BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B
[Candidatus Liberibacter asiaticus str. psy62]
         (805 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040668|gb|ACT57464.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 805

 Score = 1670 bits (4324), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 805/805 (100%), Positives = 805/805 (100%)

Query: 1   MPKKTRSFPKKDSRIQSISTRVDDLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNA 60
           MPKKTRSFPKKDSRIQSISTRVDDLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNA
Sbjct: 1   MPKKTRSFPKKDSRIQSISTRVDDLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNA 60

Query: 61  AKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG 120
           AKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG
Sbjct: 61  AKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG 120

Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180
           KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG
Sbjct: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR
Sbjct: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG
Sbjct: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI
Sbjct: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
           SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ
Sbjct: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
           RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI
Sbjct: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC
Sbjct: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
           QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE
Sbjct: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD
Sbjct: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
           KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI
Sbjct: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720

Query: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
           NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF
Sbjct: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780

Query: 781 EEAARIRDEIKRLKSSPYFQGLDDS 805
           EEAARIRDEIKRLKSSPYFQGLDDS
Sbjct: 781 EEAARIRDEIKRLKSSPYFQGLDDS 805


>gi|315122486|ref|YP_004062975.1| excinuclease ABC subunit B [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495888|gb|ADR52487.1| excinuclease ABC subunit B [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 817

 Score = 1351 bits (3497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 654/805 (81%), Positives = 723/805 (89%), Gaps = 12/805 (1%)

Query: 13  SRIQSI-STRVDDLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNAAKRM----LIH 67
           S I+S  S+  DD DY SFE+KQ   DK +VA+ MR+IRSEAGKHRKN AKR+     +H
Sbjct: 13  SHIESTRSSFTDDQDYLSFEKKQFYADKEIVANTMRQIRSEAGKHRKNVAKRINKEKSLH 72

Query: 68  QRENTASKGEFQSQSSISMSEKQT-------REISEQTMTPSVQALARLIQSDNPLLKNG 120
             +  +SK   QS+   +  +K+T       +EI+E  MTPSVQALARLIQSDNPL KNG
Sbjct: 73  NSDPKSSKIALQSKKPTTQDKKRTALNNIPKKEIAENAMTPSVQALARLIQSDNPLFKNG 132

Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180
           KIWTPHRS SI+NH K I+ FQM TDY PSGDQP+AI+Q+++ IH+ EK+QLLLGVTGSG
Sbjct: 133 KIWTPHRSLSIHNHPKKISPFQMHTDYQPSGDQPSAISQIVESIHAEEKIQLLLGVTGSG 192

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP+NAVEYFVSYYDYYQPEAYVPR
Sbjct: 193 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPNNAVEYFVSYYDYYQPEAYVPR 252

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI+++KIG
Sbjct: 253 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMILKIKIG 312

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           D +EQKELLSSLVKQQYKRQD+GI+RG+FRVCGDSIEIFPSHLE+ AWR+SMFGNDIEEI
Sbjct: 313 DQIEQKELLSSLVKQQYKRQDMGIVRGSFRVCGDSIEIFPSHLENTAWRISMFGNDIEEI 372

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
           +EF PLTGQK RN+E IKIYANSHYVTPRPTLN AMK IKEEL +RLIELEKEGRLLE+Q
Sbjct: 373 AEFDPLTGQKNRNLEEIKIYANSHYVTPRPTLNAAMKCIKEELNVRLIELEKEGRLLESQ 432

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
           RL QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI E++LLFVDESHVTI
Sbjct: 433 RLAQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYISENALLFVDESHVTI 492

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           PQISGMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+CLRPTTIVVSATPG+WELE+C
Sbjct: 493 PQISGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDCLRPTTIVVSATPGAWELEKC 552

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
           QG+IVEQIIRPTGLVDPPVEIRSARTQVED+ +EINL  Q GLRILLTVLTKRMAEDLTE
Sbjct: 553 QGMIVEQIIRPTGLVDPPVEIRSARTQVEDIKEEINLTIQNGLRILLTVLTKRMAEDLTE 612

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           YLYE NIRVRYMHSEV TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD
Sbjct: 613 YLYEHNIRVRYMHSEVHTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 672

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
           KEGFLRS+TSLIQTIGRAARNV+SKVILYADT+TKSI+LAIDETTRRREKQ E+N+K+NI
Sbjct: 673 KEGFLRSRTSLIQTIGRAARNVDSKVILYADTMTKSIKLAIDETTRRREKQQEYNRKNNI 732

Query: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
            P+SVKEKI+EVIDPIL E+ + + I+I+ +QL  SKK+ + HLKSLRKQM +AADN+NF
Sbjct: 733 KPESVKEKIIEVIDPILQENNSKSEITINTEQLPQSKKERELHLKSLRKQMLIAADNMNF 792

Query: 781 EEAARIRDEIKRLKSSPYFQGLDDS 805
           EEAARIRDEIKRLK++  +  LD S
Sbjct: 793 EEAARIRDEIKRLKNAFSYDTLDSS 817


>gi|327192675|gb|EGE59613.1| excinuclease ABC protein, B subunit [Rhizobium etli CNPAF512]
          Length = 1013

 Score = 1071 bits (2769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/794 (64%), Positives = 629/794 (79%), Gaps = 31/794 (3%)

Query: 33  KQLEVDKTMVA-DAMRRIRSEAGKHRK---NAAKR----MLIHQREN------------- 71
           KQLE D      ++ R I S+AGKHRK   NAA++    + ++++               
Sbjct: 36  KQLEADAEASGVESQRDIASKAGKHRKAVENAARKHSEAVSVNKKATVGKTARGVSIGGS 95

Query: 72  ----TASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHR 127
               T +       + + +S +    IS   +T +V+AL++LI+S NPL KNGKIWTPHR
Sbjct: 96  SDPKTRAAAGLNPVAGLDISLEDAGNISPGGVTATVEALSKLIESGNPLHKNGKIWTPHR 155

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
               +     I    M++DY P+GDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMAK
Sbjct: 156 PARPDKSEGGIRIL-MKSDYEPAGDQPTAIRDLVEGLENGDRSQVLLGVTGSGKTFTMAK 214

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           VIEA QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK
Sbjct: 215 VIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEK 274

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           ESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++
Sbjct: 275 ESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQ 334

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           LL+ LV QQYKR+D+   RG+FRV GD+IE+FP+HLED AWR+SMFG++I+ I+EF PLT
Sbjct: 335 LLADLVAQQYKRRDMDFTRGSFRVRGDTIELFPAHLEDAAWRISMFGDEIDAITEFDPLT 394

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           GQK+ +++++KIYANSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR  
Sbjct: 395 GQKVGDLKSVKIYANSHYVTPRPTLNGAIKSIKEELRLRLAELEKAGRLLEAQRLEQRTR 454

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           YD+EMLE TGSCQ IENYSRYLTGR+PG+PPPTLFEYIP+++L+F+DESHVT+PQI GMY
Sbjct: 455 YDIEMLEATGSCQGIENYSRYLTGRDPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGMY 514

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
           RGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+EQ  G+  EQ
Sbjct: 515 RGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQSGGVFAEQ 574

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           +IRPTGL+DPPVE+RSARTQV+DV  EI   A +G R L TVLTKRMAEDLTEYL+E+ +
Sbjct: 575 VIRPTGLIDPPVEVRSARTQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGV 634

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS
Sbjct: 635 RVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRS 694

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           +TSLIQTIGRAARNV+ KVILYAD +T S+Q A+DET RRREKQ+ +N ++ I P+SVK 
Sbjct: 695 ETSLIQTIGRAARNVDGKVILYADQVTGSMQRAMDETGRRREKQMAYNLENGITPESVKA 754

Query: 728 KIMEVIDPILLEDAATTNIS-IDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEE 782
           KI +++D +   D    +IS +  +  +    L     +AHL +L K M  AA +L+FE+
Sbjct: 755 KISDILDSVYERDHVRADISGVSGKGFADGGNLVGNNLQAHLNALEKSMRDAAADLDFEK 814

Query: 783 AARIRDEIKRLKSS 796
           AAR+RDEIKRLK++
Sbjct: 815 AARLRDEIKRLKAA 828


>gi|190892262|ref|YP_001978804.1| excinuclease ABC protein, B subunit [Rhizobium etli CIAT 652]
 gi|190697541|gb|ACE91626.1| excinuclease ABC protein, B subunit [Rhizobium etli CIAT 652]
          Length = 1013

 Score = 1070 bits (2768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/794 (64%), Positives = 630/794 (79%), Gaps = 31/794 (3%)

Query: 33  KQLEVDKTMVA-DAMRRIRSEAGKHRK---NAAKR----MLIHQREN------------- 71
           KQLE D      ++ R I S+AGKHRK   NAA++    + ++++               
Sbjct: 36  KQLEADAEASGVESQRDIASKAGKHRKAVENAARKHSEAVSVNKKATVGKTARGVSIGGS 95

Query: 72  ----TASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHR 127
               T +       + + +S +   +IS   +T +V+AL++LI+S NPL KNGKIWTPHR
Sbjct: 96  SDPKTRAAAGLNPVAGLDISLEDAGKISPGGVTATVEALSKLIESGNPLHKNGKIWTPHR 155

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
               +     I    M++DY P+GDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMAK
Sbjct: 156 PARPDKSEGGIRIL-MKSDYEPAGDQPTAIRDLVEGLENGDRSQVLLGVTGSGKTFTMAK 214

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           VIEA QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK
Sbjct: 215 VIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEK 274

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           ESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++
Sbjct: 275 ESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQ 334

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           LL+ LV QQYKR+D+   RG+FRV GD+IE+FP+HLED AWR+SMFG++I+ I+EF PLT
Sbjct: 335 LLADLVAQQYKRRDMDFTRGSFRVRGDTIELFPAHLEDAAWRISMFGDEIDAITEFDPLT 394

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           GQK+ +++++KIYANSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR  
Sbjct: 395 GQKVGDLKSVKIYANSHYVTPRPTLNGAIKSIKEELRLRLAELEKAGRLLEAQRLEQRTR 454

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           YD+EMLE TGSCQ IENYSRYLTGR+PG+PPPTLFEYIP+++L+F+DESHVT+PQI GMY
Sbjct: 455 YDIEMLEATGSCQGIENYSRYLTGRDPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGMY 514

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
           RGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+EQ  G+  EQ
Sbjct: 515 RGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQSGGVFAEQ 574

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           +IRPTGL+DPPVE+RSARTQV+DV  EI   A +G R L TVLTKRMAEDLTEYL+E+ +
Sbjct: 575 VIRPTGLIDPPVEVRSARTQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGV 634

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS
Sbjct: 635 RVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRS 694

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           +TSLIQTIGRAARNV+ KVILYAD +T S+Q A+DET RRREKQ+ +N ++ I P+SVK 
Sbjct: 695 ETSLIQTIGRAARNVDGKVILYADQVTGSMQRAMDETGRRREKQMAYNLENGITPESVKA 754

Query: 728 KIMEVIDPILLEDAATTNIS-IDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEE 782
           KI +++D +   D    +IS +  +  +    L     +AHL +L K M  AA +L+FE+
Sbjct: 755 KISDILDSVYERDHVRADISGVSGKGFADGGNLVGNNLQAHLNALEKSMRDAAADLDFEK 814

Query: 783 AARIRDEIKRLKSS 796
           AAR+RDEIKRLK++
Sbjct: 815 AARLRDEIKRLKAA 828


>gi|15965654|ref|NP_386007.1| excinuclease ABC subunit B [Sinorhizobium meliloti 1021]
 gi|307314058|ref|ZP_07593671.1| excinuclease ABC, B subunit [Sinorhizobium meliloti BL225C]
 gi|307321235|ref|ZP_07600637.1| excinuclease ABC, B subunit [Sinorhizobium meliloti AK83]
 gi|15074835|emb|CAC46480.1| Probable excinuclease ABC subunit B [Sinorhizobium meliloti 1021]
 gi|306893137|gb|EFN23921.1| excinuclease ABC, B subunit [Sinorhizobium meliloti AK83]
 gi|306899180|gb|EFN29819.1| excinuclease ABC, B subunit [Sinorhizobium meliloti BL225C]
          Length = 985

 Score = 1069 bits (2765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/780 (65%), Positives = 622/780 (79%), Gaps = 17/780 (2%)

Query: 33  KQLEVD-KTMVADAMRRIRSEAGKHRK----NAAKR-----MLIHQRENTASKGEFQSQS 82
           KQLE + +    ++ R + S+AG+HRK    +A+K      M       T +       +
Sbjct: 40  KQLESEAEASTFESRREVASKAGRHRKKVEISASKSARGTSMGGTTDPKTRAAAGLNPVA 99

Query: 83  SISMS-EKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFF 141
            + ++ E   +  S   +T +V+ALA+LI+S NPL K+GK+WTPHR          I   
Sbjct: 100 GLDVALEDADKLTSGSGVTATVEALAKLIESGNPLFKDGKLWTPHRPARPEKSEGGIAI- 158

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           +MQ+DY P+GDQP AIA L+ G+ S E+ Q+LLGVTGSGKTFTMAKVIEA QRPA+++AP
Sbjct: 159 RMQSDYEPAGDQPTAIADLVDGLTSGERNQVLLGVTGSGKTFTMAKVIEATQRPAVILAP 218

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHS
Sbjct: 219 NKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHS 278

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           ATRSLLER+D I+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++LL+ LV QQYKR+D
Sbjct: 279 ATRSLLERDDVIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQLLADLVAQQYKRRD 338

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           +   RG+FRV GD+IEIFP+HLED AWR+SMFG++I+ I+EF PLTGQK  +++++KIYA
Sbjct: 339 MDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQKTGDLKSVKIYA 398

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
           NSHYVTPRPTLN A+K IKEE+  RL ELE+ GRLLEAQRLEQR  YD+EMLE TGSCQ 
Sbjct: 399 NSHYVTPRPTLNAAIKAIKEEMSQRLAELERAGRLLEAQRLEQRTRYDIEMLEATGSCQG 458

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVTIPQI GMYRGDF RKATLAEYG
Sbjct: 459 IENYSRYLTGRRPGEPPPTLFEYIPDNALIFIDESHVTIPQIGGMYRGDFRRKATLAEYG 518

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+EQ  G+  EQ+IRPTGL+DPPVE+
Sbjct: 519 FRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQAGGVFAEQVIRPTGLIDPPVEV 578

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           RSA+TQV+DV  EI   A  G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLER
Sbjct: 579 RSAKTQVDDVLGEIRETAAAGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLER 638

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           IEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARN
Sbjct: 639 IEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARN 698

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           V+ KVILYADTIT S+Q A++ET+RRREKQ+ +N +H I P+SVK KI +++D +   D 
Sbjct: 699 VDGKVILYADTITGSMQRAMEETSRRREKQMAYNAEHGITPESVKAKISDILDSVYERDH 758

Query: 742 ATTNISIDAQQ-----LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              +IS  A +       L     +AHL +L KQM  AA +L+FE+AAR+RDEIKRLK++
Sbjct: 759 VRADISGVAGKGFADGGHLVGNNLQAHLNALEKQMRDAAADLDFEKAARLRDEIKRLKAA 818


>gi|241205212|ref|YP_002976308.1| excinuclease ABC subunit B [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859102|gb|ACS56769.1| excinuclease ABC, B subunit [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 997

 Score = 1068 bits (2763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/794 (64%), Positives = 627/794 (78%), Gaps = 36/794 (4%)

Query: 33  KQLEVD-KTMVADAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSSISMS---- 87
           KQLE D +T   +  R+I S+AGKHRK    ++ I  R  T+  G   S+S+   S    
Sbjct: 36  KQLEADAETSGVETQRQIASKAGKHRK----KVEIAARTKTSDGGVSASKSARGTSMGGS 91

Query: 88  -EKQTREISE--------------------QTMTPSVQALARLIQSDNPLLKNGKIWTPH 126
            + +TR  +                       +T +V+AL+ LI+S NPL KNGKIWTPH
Sbjct: 92  TDPKTRAAAGLNPVSGMDTTLEEASSLQAGTAVTATVEALSALIESGNPLHKNGKIWTPH 151

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
           R    +     I   +MQ+DY P+GDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMA
Sbjct: 152 RPARPDKSEGGIAI-RMQSDYEPAGDQPTAIRDLVEGLENGDRSQVLLGVTGSGKTFTMA 210

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
           KVIEA QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIE
Sbjct: 211 KVIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIE 270

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           KESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q+
Sbjct: 271 KESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQR 330

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +LL+ LV QQYKR+D+   RG+FRV GD+IE+FP+HLED AWR+SMFG++I+ I+EF PL
Sbjct: 331 QLLADLVAQQYKRRDMDFTRGSFRVRGDTIELFPAHLEDAAWRISMFGDEIDAITEFDPL 390

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TGQK+ +++++KIYANSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR 
Sbjct: 391 TGQKVGDLKSVKIYANSHYVTPRPTLNGAIKSIKEELRLRLAELEKAGRLLEAQRLEQRT 450

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
            YD+EMLE TGSCQ IENYSRYLTGR+PG+PPPTLFEYIP+++L+F+DESHVT+PQI GM
Sbjct: 451 RYDIEMLEATGSCQGIENYSRYLTGRDPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGM 510

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           YRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ  G+  E
Sbjct: 511 YRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGGWEMEQSGGVFAE 570

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q+IRPTGL+DPPVE+RSAR+QV+DV  EI   A +G R L TVLTKRMAEDLTEYL+E+ 
Sbjct: 571 QVIRPTGLIDPPVEVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQG 630

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           +RVRYMHS++ TLERIEI+RDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLR
Sbjct: 631 VRVRYMHSDIDTLERIEILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLR 690

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S+TSLIQTIGRAARNV+ KVILYAD IT S++ A++ET+RRREKQ+ +N++H I P+SVK
Sbjct: 691 SETSLIQTIGRAARNVDGKVILYADQITGSMKRAMEETSRRREKQMVYNQEHGITPESVK 750

Query: 727 EKIMEVIDPILLEDAATTNISID-----AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
            +I +++D +   D    +IS       A   +L     + HL +L K M  AA +L+FE
Sbjct: 751 ARINDILDSVYERDHVRADISGTSGKGFADGGNLVGNNLQTHLNALEKSMRDAAADLDFE 810

Query: 782 EAARIRDEIKRLKS 795
           +AAR+RDEIKRLK+
Sbjct: 811 KAARLRDEIKRLKA 824


>gi|116252704|ref|YP_768542.1| excinuclease ABC subunit B [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257352|emb|CAK08447.1| putative UVRABC system protein B (UvrB protein) (excinuclease ABC
           subunit B) [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1009

 Score = 1068 bits (2762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/795 (64%), Positives = 627/795 (78%), Gaps = 36/795 (4%)

Query: 33  KQLEVD-KTMVADAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSSISMS---- 87
           KQLE D +T   +  R+I S+AGKHRK    ++ I  R  T+  G   S+S+   S    
Sbjct: 36  KQLEADAETSGVETQRQIASKAGKHRK----KVEIAARTKTSDGGVSASKSARGTSMGGS 91

Query: 88  -EKQTREISE--------------------QTMTPSVQALARLIQSDNPLLKNGKIWTPH 126
            + +TR  +                       +T +V+AL+ LI+S NPL KNGKIWTPH
Sbjct: 92  TDPKTRAAAGLNPVSGMDTTLEEASSLQAGTAVTATVEALSALIESGNPLHKNGKIWTPH 151

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
           R    +     I   +MQ+DY P+GDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMA
Sbjct: 152 RPARPDKSEGGIAI-RMQSDYEPAGDQPTAIRDLVEGLENGDRSQVLLGVTGSGKTFTMA 210

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
           KVIEA QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIE
Sbjct: 211 KVIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIE 270

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           KESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q+
Sbjct: 271 KESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQR 330

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +LL+ LV QQYKR+D+   RG+FRV GD+IE+FP+HLED AWR+SMFG++I+ I+EF PL
Sbjct: 331 QLLADLVAQQYKRRDMDFTRGSFRVRGDTIELFPAHLEDAAWRISMFGDEIDAITEFDPL 390

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TGQK+ +++++KIYANSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR 
Sbjct: 391 TGQKVGDLKSVKIYANSHYVTPRPTLNGAIKSIKEELRLRLAELEKAGRLLEAQRLEQRT 450

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
            YD+EMLE TGSCQ IENYSRYLTGR+PG+PPPTLFEYIP+++L+F+DESHVT+PQI GM
Sbjct: 451 RYDIEMLEATGSCQGIENYSRYLTGRDPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGM 510

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           YRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ  G+  E
Sbjct: 511 YRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGGWEMEQSGGVFAE 570

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q+IRPTGL+DPPVE+RSAR+QV+DV  EI   A +G R L TVLTKRMAEDLTEYL+E+ 
Sbjct: 571 QVIRPTGLIDPPVEVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQG 630

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           +RVRYMHS++ TLERIEI+RDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLR
Sbjct: 631 VRVRYMHSDIDTLERIEILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLR 690

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S+TSLIQTIGRAARNV+ KVILYAD +T S++ A++ET RRREKQ+ +N++H I P+SVK
Sbjct: 691 SETSLIQTIGRAARNVDGKVILYADQVTGSMKRAMEETGRRREKQMVYNQEHGITPESVK 750

Query: 727 EKIMEVIDPILLEDAATTNISID-----AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
            +I +++D +   D    +IS       A   +L     + HL +L K M  AA +L+FE
Sbjct: 751 ARISDILDSVYERDHVRADISGASGKGFADGGNLVGNNLQTHLNALEKSMRDAAADLDFE 810

Query: 782 EAARIRDEIKRLKSS 796
           +AAR+RDEIKRLK++
Sbjct: 811 KAARLRDEIKRLKAA 825


>gi|15889291|ref|NP_354972.1| excinuclease ABC subunit B [Agrobacterium tumefaciens str. C58]
 gi|15157125|gb|AAK87757.1| excinuclease ABC subunit B [Agrobacterium tumefaciens str. C58]
          Length = 988

 Score = 1068 bits (2762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/796 (64%), Positives = 625/796 (78%), Gaps = 33/796 (4%)

Query: 33  KQLEVD-KTMVADAMRRIRSEAGKHRKN--------AAKRMLIHQRENTASK-------- 75
           KQLE + +    +  R I S+AGKHRK         A K      +  TASK        
Sbjct: 37  KQLEAEAEAGSVETQREIASKAGKHRKKIEIEARKEAEKAANKTAKNTTASKTARGVSIG 96

Query: 76  ----------GEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTP 125
                           + + +S ++   ++   +T +V+AL+ LI+S NPL K+GK+WTP
Sbjct: 97  ASSDPKTRAAAGLNPVAGMDVSLEEAANLAPGAVTATVEALSALIESGNPLFKDGKMWTP 156

Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185
           HR          +T  +M ++Y P+GDQP AIA L++GI+S E+ Q+LLGVTGSGKTFTM
Sbjct: 157 HRPARPPKSEGGVTI-RMDSEYQPAGDQPTAIADLVEGINSGERSQVLLGVTGSGKTFTM 215

Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           AKVIEA QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DT+I
Sbjct: 216 AKVIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFI 275

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
           EKESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+++GD ++Q
Sbjct: 276 EKESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMQVGDRLDQ 335

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
           ++LL+ LV QQYKR+D+   RG+FRV GD+IEIFP+HLED AWR+SMFG++I+ I+EF P
Sbjct: 336 RQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDP 395

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           LTGQK  +++++KIYANSHYVTPRPTLN A+K IKEELK+RL ELEK GRLLEAQRLEQR
Sbjct: 396 LTGQKTGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELKVRLAELEKAGRLLEAQRLEQR 455

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
             YD+EMLE TGSC  IENYSRYLTGRNPGEPPPTLFEYIP+++LLF+DESHV++ QI G
Sbjct: 456 TRYDIEMLEATGSCAGIENYSRYLTGRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGG 515

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP T+ VSATPGSWE+EQ  G+  
Sbjct: 516 MYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPLTVAVSATPGSWEMEQSGGVFA 575

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           EQ+IRPTGL+DPPVE+RSAR+QV+DV  EI   A +G R L TVLTKRMAEDLTEYL+E+
Sbjct: 576 EQVIRPTGLIDPPVEVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQ 635

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFL
Sbjct: 636 GVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFL 695

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS+TSLIQTIGRAARNV+ KVILYAD IT S++ A++ET+RRREKQ+ +N +H I P+SV
Sbjct: 696 RSETSLIQTIGRAARNVDGKVILYADNITGSMKRAMEETSRRREKQMAYNAEHGITPESV 755

Query: 726 KEKIMEVIDPILLEDAATTNIS-IDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNF 780
           K KI +++D +   D    +IS +  +  +    L     +AHL +L K M  AA +L+F
Sbjct: 756 KAKISDILDSVYERDHVRADISGVSGKGFADGGHLVGNNLQAHLNALEKSMRDAAADLDF 815

Query: 781 EEAARIRDEIKRLKSS 796
           E+AAR+RDEIKRLK++
Sbjct: 816 EKAARLRDEIKRLKAA 831


>gi|86358172|ref|YP_470064.1| excinuclease ABC subunit B [Rhizobium etli CFN 42]
 gi|86282274|gb|ABC91337.1| excinuclease ABC subunit B protein [Rhizobium etli CFN 42]
          Length = 961

 Score = 1068 bits (2762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/793 (64%), Positives = 624/793 (78%), Gaps = 31/793 (3%)

Query: 33  KQLEVDKTMVA-DAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSSISMS---- 87
           KQLE +      ++ R I S+AGKHRK        H    + +K    S+++  +S    
Sbjct: 2   KQLEAEAEASGVESQREIASKAGKHRKRVENEARKHSEAVSVNKKATVSKTARGVSIGGS 61

Query: 88  -EKQTR-------------------EISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHR 127
            + +TR                    IS   +T +V+AL++LI+S NPL KNGKIWTPHR
Sbjct: 62  SDPKTRAAAGLNPVAGLDISLEDAGSISPGGVTATVEALSKLIESGNPLHKNGKIWTPHR 121

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
               +     IT  +M ++Y P+GDQP AI  L++G+ S E+ Q+LLGVTGSGKTFTMAK
Sbjct: 122 PARPDKSEGGITI-RMDSEYKPAGDQPTAIRDLVEGLQSGERSQVLLGVTGSGKTFTMAK 180

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           VIE  QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK
Sbjct: 181 VIEETQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEK 240

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           ESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++
Sbjct: 241 ESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMNVGDRLDQRQ 300

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           LL+ LV QQYKR+DI   RG+FRV GD+IEIFP+HLED AWR+SMFG++I+ I+EF PLT
Sbjct: 301 LLADLVAQQYKRRDIDFTRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDAITEFDPLT 360

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           GQK  +++++KIYANSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR  
Sbjct: 361 GQKTGDLKSVKIYANSHYVTPRPTLNGAIKAIKEELRLRLAELEKAGRLLEAQRLEQRTR 420

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           YD+EMLE TGSCQ IENYSRYLTGR+PG+PPPTLFEYIP+++++F+DESHVT+PQI GMY
Sbjct: 421 YDIEMLEATGSCQGIENYSRYLTGRDPGDPPPTLFEYIPDNAIVFIDESHVTVPQIGGMY 480

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
           RGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+EQ  G+  EQ
Sbjct: 481 RGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQSGGVFAEQ 540

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           +IRPTGL+DPPVE+RSARTQV+DV  EI   A +G R L TVLTKRMAEDLTEYL+E+ +
Sbjct: 541 VIRPTGLIDPPVEVRSARTQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGV 600

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS
Sbjct: 601 RVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRS 660

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           +TSLIQTIGRAARNV+ KVILYAD +T S+Q A+DET RRREKQ+ +N ++ I P+SVK 
Sbjct: 661 ETSLIQTIGRAARNVDGKVILYADQVTGSMQRAMDETARRREKQMAYNLENGITPESVKA 720

Query: 728 KIMEVIDPILLEDAATTNIS-IDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEE 782
           KI +++D +   D    +IS +  +  +    L     +AHL +L K M  AA +L+FE+
Sbjct: 721 KISDILDSVYERDHVRADISGVSGKGFADGGNLVGNNLQAHLNALEKSMRDAAADLDFEK 780

Query: 783 AARIRDEIKRLKS 795
           AAR+RDEIKRLK+
Sbjct: 781 AARLRDEIKRLKA 793


>gi|227822296|ref|YP_002826267.1| excinuclease ABC subunit B [Sinorhizobium fredii NGR234]
 gi|227341296|gb|ACP25514.1| UvrABC system protein B [Sinorhizobium fredii NGR234]
          Length = 994

 Score = 1068 bits (2761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/789 (65%), Positives = 617/789 (78%), Gaps = 26/789 (3%)

Query: 33  KQLEVD-KTMVADAMRRIRSEAGKHRKN--------AAKRMLIHQRENTASKGEFQSQSS 83
           KQLE + +T   ++ R I S+AGKHRK         AAK +       T+  G    ++ 
Sbjct: 40  KQLEAEAETSAFESQREIASKAGKHRKKVEITASKAAAKTVAGKTARGTSMGGSHDPKTR 99

Query: 84  ISMS-----------EKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSIN 132
            +             E   +  +   +T +V+ALA LI+S NPL K+GK+WTPHR    +
Sbjct: 100 AAAGLNPVAGLDVSLEDADKLTTGSGVTATVEALAALIESGNPLFKDGKLWTPHRPARPD 159

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
                I+  +M TDY PSGDQP AIA L+ G+ S E+ Q+LLGVTGSGKTFTMAKVIEA 
Sbjct: 160 KSEGGISL-KMVTDYQPSGDQPTAIADLVDGLSSGERNQVLLGVTGSGKTFTMAKVIEAT 218

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSIN
Sbjct: 219 QRPAVILAPNKTLAAQLYSEFKNFFPENAVEYFVSYYDYYQPEAYVPRSDTYIEKESSIN 278

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           EQIDRMRHSATRSLLER+D ++V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++LL+ L
Sbjct: 279 EQIDRMRHSATRSLLERDDVVIVASVSCIYGIGSVETYTAMTFQMTVGDRLDQRQLLADL 338

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V QQYKR+D+   RG+FRV GD+IEIFP+HLED AWR+SMFG++I+ I+EF PLTGQK  
Sbjct: 339 VAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDAITEFDPLTGQKTG 398

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           +++++KIYANSHYVTPRPTLN A K IK+EL  RL ELE+ GRLLEAQRLEQR  YDLEM
Sbjct: 399 DLKSVKIYANSHYVTPRPTLNAATKAIKDELAHRLTELERAGRLLEAQRLEQRTRYDLEM 458

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           LE TGSCQ IENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVTIPQI GMYRGDF 
Sbjct: 459 LEATGSCQGIENYSRYLTGRKPGEPPPTLFEYIPDNALIFIDESHVTIPQIGGMYRGDFR 518

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ  G+  EQ+IRPT
Sbjct: 519 RKATLAEYGFRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGGWEMEQSGGVFAEQVIRPT 578

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DPPVE+RSA+TQV+DV  EI   A  G R L+TVLTKRMAEDLTEYL+E+ +RVRYM
Sbjct: 579 GLIDPPVEVRSAKTQVDDVLGEIRETAAAGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYM 638

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLI
Sbjct: 639 HSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLI 698

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+ KVILYADTIT S+  A++ET RRREKQ+ +N ++ I P+SVK KI ++
Sbjct: 699 QTIGRAARNVDGKVILYADTITGSMSRAMEETARRREKQMAYNLENGITPESVKAKISDI 758

Query: 733 IDPILLEDAATTNISID-----AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           +D +   D    +IS       A+   L     +AHL +L KQM  AA +L+FE AAR+R
Sbjct: 759 LDSVYERDHVRADISGVAGKGFAEAGHLVGNNLQAHLNALEKQMRDAAADLDFETAARLR 818

Query: 788 DEIKRLKSS 796
           DEIKRLK++
Sbjct: 819 DEIKRLKAA 827


>gi|150396826|ref|YP_001327293.1| excinuclease ABC subunit B [Sinorhizobium medicae WSM419]
 gi|150028341|gb|ABR60458.1| excinuclease ABC, B subunit [Sinorhizobium medicae WSM419]
          Length = 978

 Score = 1066 bits (2756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/780 (65%), Positives = 622/780 (79%), Gaps = 17/780 (2%)

Query: 33  KQLEVD-KTMVADAMRRIRSEAGKHRK----NAAKR-----MLIHQRENTASKGEFQSQS 82
           KQLE + +    ++ R + S+AG+HRK    +A+K      M       T +       +
Sbjct: 40  KQLESEAEASTFESRREVASKAGRHRKKVEISASKSARGTSMGGTTDPKTRAAAGLNPVA 99

Query: 83  SISMS-EKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFF 141
            + +S E   +  S   +T +V+ALA+LI+S NPL K+GK+WTPHR    +     I   
Sbjct: 100 GLDVSLEDADKLTSGSGVTATVEALAKLIESGNPLFKDGKLWTPHRPARPDKSEGGIAI- 158

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           +MQ+DY P+GDQP AIA L+ G+ S E+ Q+LLGVTGSGKTFTMAKVIEA QRPA+++AP
Sbjct: 159 RMQSDYEPAGDQPTAIADLVGGLASGERNQVLLGVTGSGKTFTMAKVIEATQRPAVILAP 218

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHS
Sbjct: 219 NKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHS 278

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           ATRSLLER+D I+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++LL+ LV QQYKR++
Sbjct: 279 ATRSLLERDDVIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQLLADLVAQQYKRRE 338

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           +   RG+FRV GD+IEIFP+HLED AWR+SMFG++I+ I+EF PLTGQK  +++++KIYA
Sbjct: 339 MDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQKTGDLKSVKIYA 398

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
           NSHYVTPRPTLN A+K IKEEL  RL+ELE+ GRLLEAQRLEQR  YD+EMLE TGSCQ 
Sbjct: 399 NSHYVTPRPTLNAAIKAIKEELSHRLVELERAGRLLEAQRLEQRTRYDIEMLEATGSCQG 458

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSRYLTGR PGEPPPTLFEYIP+D+L+F+DESHVTIPQI GMYRGDF RKATLAEYG
Sbjct: 459 IENYSRYLTGRRPGEPPPTLFEYIPDDALIFIDESHVTIPQIGGMYRGDFRRKATLAEYG 518

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+EQ  G+  EQ+IRPTGL+DP VE+
Sbjct: 519 FRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQSGGVFAEQVIRPTGLIDPAVEV 578

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           RSA+TQV+DV  EI   A  G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLER
Sbjct: 579 RSAKTQVDDVLGEIRETAAAGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLER 638

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           IEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARN
Sbjct: 639 IEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARN 698

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           V+ KVILYADTIT S++ A++ET RRREKQ+ +N +H I P+SVK KI +++D +   D 
Sbjct: 699 VDGKVILYADTITGSMKRAMEETGRRREKQMAYNAEHGITPESVKAKISDILDSVYERDH 758

Query: 742 ATTNISIDAQQ-----LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              +IS  A +       L     +AHL +L KQM  AA +L+FE+AAR+RDEIKRLK++
Sbjct: 759 VRADISGVAGKGFADGGHLVGNNLQAHLNALEKQMRDAAADLDFEKAARLRDEIKRLKAA 818


>gi|325293370|ref|YP_004279234.1| excinuclease ABC subunit B [Agrobacterium sp. H13-3]
 gi|325061223|gb|ADY64914.1| excinuclease ABC subunit B [Agrobacterium sp. H13-3]
          Length = 1043

 Score = 1063 bits (2749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/796 (63%), Positives = 627/796 (78%), Gaps = 33/796 (4%)

Query: 33  KQLEVD-KTMVADAMRRIRSEAGKHRKN-------AAKRMLIHQRENTASKGEFQSQSSI 84
           KQLE + +    +  R + S+AGKHRK         A++      +NT +    +  S  
Sbjct: 87  KQLEAEAEAGSVETQREVASKAGKHRKKIEIEARKEAEKATNKTAKNTTASKTARGVSIG 146

Query: 85  SMSEKQTR-------------------EISEQTMTPSVQALARLIQSDNPLLKNGKIWTP 125
           + S+ +TR                    ++   +T +V+AL+ LI+S NPL K+GK+WTP
Sbjct: 147 ASSDPKTRAAAGLNPVAGMDVSLEEAANLAPGAVTATVEALSALIESGNPLFKDGKMWTP 206

Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185
           HR          +T  +M ++Y P+GDQP AIA L++GI+S E+ Q+LLGVTGSGKTFTM
Sbjct: 207 HRPARPPKSEGGVTI-RMNSEYQPAGDQPTAIADLVEGINSGERSQVLLGVTGSGKTFTM 265

Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           AKVIEA QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DT+I
Sbjct: 266 AKVIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFI 325

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
           EKESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+++GD ++Q
Sbjct: 326 EKESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMQVGDRLDQ 385

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
           ++LL+ LV QQYKR+D+   RG+FRV GD+IEIFP+HLED AWR+SMFG++I+ I+EF P
Sbjct: 386 RQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDP 445

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           LTGQK  +++++KIYANSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR
Sbjct: 446 LTGQKTGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELRVRLAELEKAGRLLEAQRLEQR 505

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
             YD+EMLE TGSC  IENYSRYLTGRNPGEPPPTLFEYIP+++LLF+DESHV++ QI G
Sbjct: 506 TRYDIEMLEATGSCAGIENYSRYLTGRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGG 565

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP T+ VSATPGSWE+EQ  G+  
Sbjct: 566 MYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPLTVAVSATPGSWEMEQAGGVFA 625

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           EQ+IRPTGL+DPPVE+RSAR+QV+DV  EI   A +G R L TVLTKRMAEDLTEYL+E+
Sbjct: 626 EQVIRPTGLIDPPVEVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQ 685

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFL
Sbjct: 686 GVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFL 745

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS+TSLIQTIGRAARNV+ KVILYAD IT S++ A++ET+RRREKQ+ +N +H I P+SV
Sbjct: 746 RSETSLIQTIGRAARNVDGKVILYADNITGSMKRAMEETSRRREKQMAYNAEHGITPESV 805

Query: 726 KEKIMEVIDPILLEDAATTNIS-IDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNF 780
           K KI +++D +   D    +IS +  +  +    L     ++HL +L K M  AA +L+F
Sbjct: 806 KAKISDILDSVYERDHVRADISGVSGKGFADGGHLVGNNLQSHLNALEKSMRDAAADLDF 865

Query: 781 EEAARIRDEIKRLKSS 796
           E+AAR+RDEIKRLK++
Sbjct: 866 EKAARLRDEIKRLKAT 881


>gi|209549788|ref|YP_002281705.1| excinuclease ABC subunit B [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535544|gb|ACI55479.1| excinuclease ABC, B subunit [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 990

 Score = 1063 bits (2749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/780 (64%), Positives = 622/780 (79%), Gaps = 17/780 (2%)

Query: 33  KQLEVDKTMVA-DAMRRIRSEAGKHRKN---AAKR------MLIHQRENTASKGEFQSQS 82
           KQLE D      +  R+I S+AGKHRK    AA +      M       T +       +
Sbjct: 36  KQLEADAEASGVETQRQIASKAGKHRKKVEIAASKSARGTSMGGSTDPKTRAAAGLNPVA 95

Query: 83  SISMSEKQTREISEQT-MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFF 141
            ++ + ++   +   T +T +V+AL+ LI+S NPL KNGKIWTPHR    +     I   
Sbjct: 96  GMNTTLEEASSLQAGTAVTATVEALSALIESGNPLHKNGKIWTPHRPARPDKSEGGIRIL 155

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
            M++DY P+GDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMAKVIEA QRPA+++AP
Sbjct: 156 -MKSDYEPAGDQPTAIRDLVEGLENGDRSQVLLGVTGSGKTFTMAKVIEATQRPAVILAP 214

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHS
Sbjct: 215 NKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHS 274

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           ATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++LL+ LV QQYKR+D
Sbjct: 275 ATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQLLADLVAQQYKRRD 334

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           +   RG+FRV GD+IE+FP+HLED AWR+SMFG++I+ I+EF PLTGQK+ +++++KIYA
Sbjct: 335 MDFTRGSFRVRGDTIELFPAHLEDAAWRISMFGDEIDAITEFDPLTGQKVGDLKSVKIYA 394

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
           NSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR  YD+EMLE TGSCQ 
Sbjct: 395 NSHYVTPRPTLNGAIKSIKEELRLRLAELEKAGRLLEAQRLEQRTRYDIEMLEATGSCQG 454

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSRYLTGR+PG+PPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYG
Sbjct: 455 IENYSRYLTGRDPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYG 514

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ  G+  EQ+IRPTGL+DPPVE+
Sbjct: 515 FRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGGWEMEQSGGVFAEQVIRPTGLIDPPVEV 574

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           RSARTQV+DV  EI   A +G R L TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLER
Sbjct: 575 RSARTQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLER 634

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           IEI+RDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARN
Sbjct: 635 IEILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARN 694

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           V+ KVILYAD +T S++ A++ET RRREKQ+ +N++H I P+SVK +I +++D +   D 
Sbjct: 695 VDGKVILYADQVTGSMKRAMEETGRRREKQMIYNQEHGITPESVKARISDILDSVYERDH 754

Query: 742 ATTNIS-IDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              +IS +  +  +    L     + HL +L K M  AA +L+FE+AAR+RDEIKRLK++
Sbjct: 755 VRADISGVSGKGFADGGNLVGNNLQTHLNALEKSMRDAAADLDFEKAARLRDEIKRLKAA 814


>gi|222086269|ref|YP_002544801.1| excinuclease ABC, B subunit [Agrobacterium radiobacter K84]
 gi|221723717|gb|ACM26873.1| excinuclease ABC, B subunit [Agrobacterium radiobacter K84]
          Length = 944

 Score = 1054 bits (2725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/779 (64%), Positives = 622/779 (79%), Gaps = 17/779 (2%)

Query: 33  KQLEVD-KTMVADAMRRIRSEAGKHRKN---AAKR------MLIHQRENTASKGEFQSQS 82
           KQLE + +T   +  R+I S+AGKHRK    AA +      M       T +       S
Sbjct: 36  KQLESEAETSGIETQRQIASKAGKHRKKVEIAASKSGRGTSMGGSTDPKTRAAAGLNPVS 95

Query: 83  SISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
            +  S +   +     +T +V+AL+ LI+S NPL K+GK+WTPHR    N     I   +
Sbjct: 96  GMDTSLENAADAG-TAVTATVEALSALIESGNPLFKDGKLWTPHRPARPNKSEGGIPI-R 153

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M +DY P+GDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMAKVIEA QRPA+++APN
Sbjct: 154 MVSDYEPAGDQPTAIRDLVEGLDNGDRSQVLLGVTGSGKTFTMAKVIEATQRPAVILAPN 213

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRHSA
Sbjct: 214 KTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSA 273

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++LL+ LV QQYKR+D+
Sbjct: 274 TRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMNVGDRLDQRQLLADLVAQQYKRRDM 333

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             IRG+FRV GD+IEIFP+HLED AWR+SMFG++I+ I+EF PLTGQK  +++++KIYAN
Sbjct: 334 DFIRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDAITEFDPLTGQKTGDLKSVKIYAN 393

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+++IKEELK+RL ELEK GRLLEAQRLEQR  YD+EMLE TGSC  I
Sbjct: 394 SHYVTPRPTLNGAIRHIKEELKIRLAELEKAGRLLEAQRLEQRTRYDVEMLEATGSCAGI 453

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGRNPGEPPPTLFEYIP+++LLF+DESHV++ QI GMYRGDF RKATLAEYGF
Sbjct: 454 ENYSRYLTGRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAEYGF 513

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE++Q  G+  EQ+IRPTGL+DPPVE+R
Sbjct: 514 RLPSCMDNRPLRFEEWDAMRPDTIAVSATPGAWEMDQSGGVFAEQVIRPTGLIDPPVEVR 573

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           SAR+QV+DV  EI   A +G R L TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 574 SARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 633

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 634 EIIRDLRLGAFDVLVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNV 693

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD IT S++ A++ET+RRREKQ+ +N ++ I P+SVK +I +++D +  +D  
Sbjct: 694 DGKVILYADNITGSMKRAMEETSRRREKQMVYNTENGITPESVKARISDILDSVYEKDHV 753

Query: 743 TTNI-SIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +I  +  +  +    L     +AHL +L K M  AA +L+FE+AAR+RDEIKRLK++
Sbjct: 754 RADIGGVSGKGFADGGHLVGNNLQAHLNALEKAMRDAAADLDFEKAARLRDEIKRLKAA 812


>gi|222148547|ref|YP_002549504.1| excinuclease ABC subunit B [Agrobacterium vitis S4]
 gi|221735533|gb|ACM36496.1| excinuclease ABC B subunit [Agrobacterium vitis S4]
          Length = 1001

 Score = 1053 bits (2723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/768 (64%), Positives = 610/768 (79%), Gaps = 13/768 (1%)

Query: 39  KTMVADAMR-----RIRSEAGKHRKNAAKRMLIHQRENTASKGE--FQSQSSISMSEKQT 91
           KT  AD ++     + +SE G      ++ + I    + A++        S +  S ++ 
Sbjct: 99  KTEAADPVKAGRTAKAKSEDGGSAMRTSRGVSIGASSDPATRAAAGLNPVSGMDTSLEEA 158

Query: 92  REISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSG 151
           + ++   +T +V+AL+ LI+S NPL K GKIW PHR          I   +M +DY P+G
Sbjct: 159 QSLAPGAVTATVEALSALIESGNPLFKGGKIWAPHRPARPEKSEGGIPI-RMVSDYEPAG 217

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQP AI  L++GI++ E+ Q+LLGVTGSGKTFTMAKVIEA QRPA+++APNK LAAQLYS
Sbjct: 218 DQPTAIKDLVEGINAGERSQVLLGVTGSGKTFTMAKVIEATQRPAVILAPNKTLAAQLYS 277

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRH+ATR++LER+D
Sbjct: 278 EFKHFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHAATRAILERDD 337

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           CI+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++LL+ LV QQYKRQDI  +RG+FRV
Sbjct: 338 CIIVASVSCIYGIGSVETYTAMTFQMSVGDRIDQRQLLADLVAQQYKRQDINFVRGSFRV 397

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD+IEIFP+HLED AWR+SMFG++I+ I+EF PLTG K  +++++KIYANSHYVTPRPT
Sbjct: 398 RGDTIEIFPAHLEDAAWRISMFGDEIDAITEFDPLTGHKTGDMKSVKIYANSHYVTPRPT 457

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           LN A+K IKEELK RL ELEK GRLLEAQRLEQR  YD+EM+E TG+C  IENYSRYLTG
Sbjct: 458 LNGAIKAIKEELKQRLAELEKGGRLLEAQRLEQRTRYDIEMMEATGACAGIENYSRYLTG 517

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
           R PGEPPPTLFEYIP+++LLF+DESHV++ QI GMYRGDF RKATLAEYGFRLPSCMDNR
Sbjct: 518 RAPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAEYGFRLPSCMDNR 577

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           PLRFEEW+ +RP T+ VSATPGSWELEQ  G+  EQ+IRPTGL+DPPVE+RSA+TQV+DV
Sbjct: 578 PLRFEEWDAMRPPTVAVSATPGSWELEQSGGVFAEQVIRPTGLIDPPVEVRSAKTQVDDV 637

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             EI   + +G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEI+RDLRLG
Sbjct: 638 LGEIKETSLKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEILRDLRLG 697

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
            FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD
Sbjct: 698 AFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYAD 757

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID-- 749
            IT S++ A+DET+RRREKQ+ +N +H I P+SVK KI +++D +   D    +IS    
Sbjct: 758 QITGSMRRAMDETSRRREKQVAYNLEHGITPESVKSKISDILDSVYERDHVRADISGASG 817

Query: 750 ---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              A    L     +AHL +L KQM  AA +L+FE AAR+RDEIKRLK
Sbjct: 818 KGFAAGGHLVGNNLQAHLSALEKQMRDAAADLDFETAARLRDEIKRLK 865


>gi|153008983|ref|YP_001370198.1| excinuclease ABC subunit B [Ochrobactrum anthropi ATCC 49188]
 gi|151560871|gb|ABS14369.1| excinuclease ABC, B subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 941

 Score = 1051 bits (2717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQ-----------------S 82
           +AD  + I  EA K R KN  +   I +R   AS+ G   S                  +
Sbjct: 40  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRSGRGTSMGGAASAKERAAAGLNPVA 99

Query: 83  SISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
            + +S +    ++    T +VQAL+ LI S NPL KNG++WTPHR    +     I   +
Sbjct: 100 GLDISLEDAAGLNPSGATATVQALSDLIASGNPLFKNGELWTPHRPARPDKSEGGIAI-E 158

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  LL+G+ + ++ Q+LLGVTGSGKTFTMA+VI+  QRPA+++APN
Sbjct: 159 METSFEPSGDQPTAIRDLLEGLDNDDRTQVLLGVTGSGKTFTMAQVIQRTQRPALILAPN 218

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 219 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 278

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 279 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 338

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IE+FP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 339 NFVRGSFRVRGDTIELFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 398

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL+EL   GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 399 SHYVTPRPTLNQAIKSIKEELKHRLVELNNAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 458

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGRNPGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 459 ENYSRYLTGRNPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 518

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 519 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGGWEMEEAGGVFAEQVIRPTGLIDPPVEIR 578

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A++QV+DV  EI   AQ+G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 579 PAKSQVDDVLGEIRETAQKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 638

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSL+QTIGRAARNV
Sbjct: 639 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLVQTIGRAARNV 698

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD IT S+Q A+DET+RRREKQ+ +N++H I P SVK+ I +++  +   D  
Sbjct: 699 DGKVILYADNITGSMQRAMDETSRRREKQVAYNEEHGITPASVKKNISDILGSVYERDHV 758

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +IS  A++ ++      AHL+ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 759 RADISGFAEEGAMMGNNLAAHLEHLEKQMRDAAADLDFEKAARLRDEIKRLRET 812


>gi|239832391|ref|ZP_04680720.1| excinuclease ABC, B subunit [Ochrobactrum intermedium LMG 3301]
 gi|239824658|gb|EEQ96226.1| excinuclease ABC, B subunit [Ochrobactrum intermedium LMG 3301]
          Length = 941

 Score = 1049 bits (2713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQ-----------------S 82
           +AD  + I  EA K R KN  +   I +R   AS+ G   S                  +
Sbjct: 40  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERAAAGLNPVA 99

Query: 83  SISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
            + +S +    ++    T +VQAL+ LI S NPL KNG++WTPHR          I   +
Sbjct: 100 GLDISLEDAAGLNPSGATATVQALSDLIASGNPLFKNGELWTPHRPARPEKSEGGIAI-E 158

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMA+VI+  QRPA+++APN
Sbjct: 159 METSFEPSGDQPTAIRDLVEGLENNDRTQVLLGVTGSGKTFTMAQVIQRTQRPALILAPN 218

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 219 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 278

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 279 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 338

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IE+FP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 339 NFVRGSFRVRGDTIELFPAHLEDRAWRISLFGDEIESITEFDPLTGQKTGDLKSVKIYAN 398

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 399 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 458

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGRNPGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 459 ENYSRYLTGRNPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 518

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 519 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 578

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   AQ+G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 579 PAKTQVDDVLGEIRDTAQKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 638

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 639 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 698

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD IT S+Q A+DET+RRREKQ+ +N++H I P SVK+ I +++  +   D  
Sbjct: 699 DGKVILYADNITGSMQRAMDETSRRREKQVAYNEEHGITPASVKKNISDILGSVYERDHV 758

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +IS  A++ ++      AHL+ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 759 RADISGFAEEGAMMGNNLAAHLEHLEKQMRDAAADLDFEKAARLRDEIKRLRET 812


>gi|254719547|ref|ZP_05181358.1| excinuclease ABC subunit B [Brucella sp. 83/13]
 gi|265984556|ref|ZP_06097291.1| excinuclease ABC subunit B [Brucella sp. 83/13]
 gi|306838487|ref|ZP_07471328.1| excinuclease ABC, B subunit [Brucella sp. NF 2653]
 gi|264663148|gb|EEZ33409.1| excinuclease ABC subunit B [Brucella sp. 83/13]
 gi|306406451|gb|EFM62689.1| excinuclease ABC, B subunit [Brucella sp. NF 2653]
          Length = 940

 Score = 1049 bits (2712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/774 (64%), Positives = 615/774 (79%), Gaps = 20/774 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93
           +AD  + I  EA K R KN  +   I +R   AS+ G   S    + ++++T        
Sbjct: 36  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95

Query: 94  -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
                      +S    T +VQALA LIQS NPL K+G++WTPHR          I   +
Sbjct: 96  GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE  QRPA+++APN
Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED+AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDLAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKQRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVE+R
Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEVR 574

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D  
Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808


>gi|17986784|ref|NP_539418.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. 16M]
 gi|17982414|gb|AAL51682.1| excinuclease abc subunit b [Brucella melitensis bv. 1 str. 16M]
          Length = 909

 Score = 1047 bits (2707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93
           +AD  + I  EA K R KN  +   I +R   AS+ G   S    + ++++T        
Sbjct: 5   IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 64

Query: 94  -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
                      +S    T +VQALA LIQS NPL K+G++WTPHR          I   +
Sbjct: 65  GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 123

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE  QRPA+++APN
Sbjct: 124 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 183

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 184 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 243

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 244 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 303

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 304 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 363

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 364 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 423

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 424 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 483

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 484 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 543

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 544 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 603

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 604 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 663

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D  
Sbjct: 664 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 723

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 724 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 777


>gi|23502381|ref|NP_698508.1| excinuclease ABC subunit B [Brucella suis 1330]
 gi|23348365|gb|AAN30423.1| excinuclease ABC, B subunit [Brucella suis 1330]
          Length = 940

 Score = 1046 bits (2706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/774 (64%), Positives = 612/774 (79%), Gaps = 20/774 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK------------------GEFQSQS 82
           +AD  + I  EA K R KN  +   I +R   AS+                        +
Sbjct: 36  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASVKERTAAGLNPVA 95

Query: 83  SISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
            + +S ++   +S    T +VQALA LIQS NPL K+G++WTPHR          I   +
Sbjct: 96  GLDISLEEAAGLSPSGATATVQALANLIQSGNPLFKHGELWTPHRPVRPEKSEGGIPI-R 154

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE  QRPA+++APN
Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D  
Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808


>gi|189024626|ref|YP_001935394.1| excinuclease ABC subunit B [Brucella abortus S19]
 gi|260546937|ref|ZP_05822676.1| excinuclease ABC subunit B [Brucella abortus NCTC 8038]
 gi|189020198|gb|ACD72920.1| excinuclease ABC subunit B [Brucella abortus S19]
 gi|260095987|gb|EEW79864.1| excinuclease ABC subunit B [Brucella abortus NCTC 8038]
          Length = 940

 Score = 1046 bits (2706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93
           +AD  + I  EA K R KN  +   I +R   AS+ G   S    + ++++T        
Sbjct: 36  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95

Query: 94  -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
                      +S    T +VQALA LIQS NPL K+G++WTPHR          I   +
Sbjct: 96  GLDISLEEAAGLSPSGATATVQALANLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE  QRPA+++APN
Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 575 PAKTQVDDVLGEIRNTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D  
Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808


>gi|62290400|ref|YP_222193.1| excinuclease ABC subunit B [Brucella abortus bv. 1 str. 9-941]
 gi|82700322|ref|YP_414896.1| excinuclease ABC subunit B [Brucella melitensis biovar Abortus
           2308]
 gi|237815904|ref|ZP_04594901.1| excinuclease ABC, B subunit [Brucella abortus str. 2308 A]
 gi|254697840|ref|ZP_05159668.1| excinuclease ABC subunit B [Brucella abortus bv. 2 str. 86/8/59]
 gi|256257948|ref|ZP_05463484.1| excinuclease ABC subunit B [Brucella abortus bv. 9 str. C68]
 gi|260762278|ref|ZP_05874621.1| excinuclease ABC subunit B [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884246|ref|ZP_05895860.1| excinuclease ABC subunit B [Brucella abortus bv. 9 str. C68]
 gi|297248785|ref|ZP_06932503.1| excinuclease ABC subunit B [Brucella abortus bv. 5 str. B3196]
 gi|62196532|gb|AAX74832.1| UvrB, excinuclease ABC, B subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82616423|emb|CAJ11486.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
           motif A (P-loop):UvrB/UvrC protein:Excinuclease ABC, B
           subunit [Brucella melitensis biovar Abortus 2308]
 gi|237789202|gb|EEP63413.1| excinuclease ABC, B subunit [Brucella abortus str. 2308 A]
 gi|260672710|gb|EEX59531.1| excinuclease ABC subunit B [Brucella abortus bv. 2 str. 86/8/59]
 gi|260873774|gb|EEX80843.1| excinuclease ABC subunit B [Brucella abortus bv. 9 str. C68]
 gi|297175954|gb|EFH35301.1| excinuclease ABC subunit B [Brucella abortus bv. 5 str. B3196]
          Length = 940

 Score = 1046 bits (2706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93
           +AD  + I  EA K R KN  +   I +R   AS+ G   S    + ++++T        
Sbjct: 36  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95

Query: 94  -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
                      +S    T +VQALA LIQS NPL K+G++WTPHR          I   +
Sbjct: 96  GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE  QRPA+++APN
Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 575 PAKTQVDDVLGEIRNTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D  
Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808


>gi|225852990|ref|YP_002733223.1| excinuclease ABC subunit B [Brucella melitensis ATCC 23457]
 gi|256263530|ref|ZP_05466062.1| excinuclease ABC subunit B [Brucella melitensis bv. 2 str. 63/9]
 gi|225641355|gb|ACO01269.1| excinuclease ABC, B subunit [Brucella melitensis ATCC 23457]
 gi|263093558|gb|EEZ17583.1| excinuclease ABC subunit B [Brucella melitensis bv. 2 str. 63/9]
 gi|326409529|gb|ADZ66594.1| excinuclease ABC subunit B [Brucella melitensis M28]
 gi|326539237|gb|ADZ87452.1| excinuclease ABC, B subunit [Brucella melitensis M5-90]
          Length = 940

 Score = 1046 bits (2705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93
           +AD  + I  EA K R KN  +   I +R   AS+ G   S    + ++++T        
Sbjct: 36  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95

Query: 94  -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
                      +S    T +VQALA LIQS NPL K+G++WTPHR          I   +
Sbjct: 96  GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE  QRPA+++APN
Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D  
Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808


>gi|163843766|ref|YP_001628170.1| excinuclease ABC subunit B [Brucella suis ATCC 23445]
 gi|163674489|gb|ABY38600.1| excinuclease ABC, B subunit [Brucella suis ATCC 23445]
          Length = 940

 Score = 1046 bits (2705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93
           +AD  + I  EA K R KN  +   I +R   AS+ G   S    + ++++T        
Sbjct: 36  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95

Query: 94  -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
                      +S    T +VQALA LIQS NPL K+G++WTPHR          I   +
Sbjct: 96  GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPVRPEKSEGGIPI-R 154

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE  QRPA+++APN
Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D  
Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808


>gi|225627954|ref|ZP_03785990.1| excinuclease ABC, B subunit [Brucella ceti str. Cudo]
 gi|254694187|ref|ZP_05156015.1| excinuclease ABC subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|254702229|ref|ZP_05164057.1| excinuclease ABC subunit B [Brucella suis bv. 5 str. 513]
 gi|254708177|ref|ZP_05170005.1| excinuclease ABC subunit B [Brucella pinnipedialis M163/99/10]
 gi|254710548|ref|ZP_05172359.1| excinuclease ABC subunit B [Brucella pinnipedialis B2/94]
 gi|256032042|ref|ZP_05445656.1| excinuclease ABC subunit B [Brucella pinnipedialis M292/94/1]
 gi|256114068|ref|ZP_05454838.1| excinuclease ABC subunit B [Brucella melitensis bv. 3 str. Ether]
 gi|256160238|ref|ZP_05457932.1| excinuclease ABC subunit B [Brucella ceti M490/95/1]
 gi|256255444|ref|ZP_05460980.1| excinuclease ABC subunit B [Brucella ceti B1/94]
 gi|260169177|ref|ZP_05755988.1| excinuclease ABC subunit B [Brucella sp. F5/99]
 gi|261214495|ref|ZP_05928776.1| excinuclease ABC subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|261222651|ref|ZP_05936932.1| excinuclease ABC subunit B [Brucella ceti B1/94]
 gi|261315685|ref|ZP_05954882.1| excinuclease ABC subunit B [Brucella pinnipedialis M163/99/10]
 gi|261318123|ref|ZP_05957320.1| excinuclease ABC subunit B [Brucella pinnipedialis B2/94]
 gi|261752803|ref|ZP_05996512.1| excinuclease ABC subunit B [Brucella suis bv. 5 str. 513]
 gi|261758692|ref|ZP_06002401.1| excinuclease ABC subunit B [Brucella sp. F5/99]
 gi|265989153|ref|ZP_06101710.1| excinuclease ABC subunit B [Brucella pinnipedialis M292/94/1]
 gi|265995404|ref|ZP_06107961.1| excinuclease ABC subunit B [Brucella melitensis bv. 3 str. Ether]
 gi|265998615|ref|ZP_06111172.1| excinuclease ABC subunit B [Brucella ceti M490/95/1]
 gi|306843141|ref|ZP_07475761.1| excinuclease ABC, B subunit [Brucella sp. BO2]
 gi|306844513|ref|ZP_07477102.1| excinuclease ABC, B subunit [Brucella sp. BO1]
 gi|225617117|gb|EEH14163.1| excinuclease ABC, B subunit [Brucella ceti str. Cudo]
 gi|260916102|gb|EEX82963.1| excinuclease ABC subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|260921235|gb|EEX87888.1| excinuclease ABC subunit B [Brucella ceti B1/94]
 gi|261297346|gb|EEY00843.1| excinuclease ABC subunit B [Brucella pinnipedialis B2/94]
 gi|261304711|gb|EEY08208.1| excinuclease ABC subunit B [Brucella pinnipedialis M163/99/10]
 gi|261738676|gb|EEY26672.1| excinuclease ABC subunit B [Brucella sp. F5/99]
 gi|261742556|gb|EEY30482.1| excinuclease ABC subunit B [Brucella suis bv. 5 str. 513]
 gi|262553239|gb|EEZ09073.1| excinuclease ABC subunit B [Brucella ceti M490/95/1]
 gi|262766517|gb|EEZ12306.1| excinuclease ABC subunit B [Brucella melitensis bv. 3 str. Ether]
 gi|264661350|gb|EEZ31611.1| excinuclease ABC subunit B [Brucella pinnipedialis M292/94/1]
 gi|306275124|gb|EFM56880.1| excinuclease ABC, B subunit [Brucella sp. BO1]
 gi|306286664|gb|EFM58222.1| excinuclease ABC, B subunit [Brucella sp. BO2]
          Length = 940

 Score = 1046 bits (2705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93
           +AD  + I  EA K R KN  +   I +R   AS+ G   S    + ++++T        
Sbjct: 36  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95

Query: 94  -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
                      +S    T +VQALA LIQS NPL K+G++WTPHR          I   +
Sbjct: 96  GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE  QRPA+++APN
Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D  
Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808


>gi|260565267|ref|ZP_05835751.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. 16M]
 gi|260151335|gb|EEW86429.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. 16M]
          Length = 940

 Score = 1046 bits (2704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93
           +AD  + I  EA K R KN  +   I +R   AS+ G   S    + ++++T        
Sbjct: 36  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95

Query: 94  -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
                      +S    T +VQALA LIQS NPL K+G++WTPHR          I   +
Sbjct: 96  GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE  QRPA+++APN
Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D  
Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808


>gi|256369928|ref|YP_003107439.1| excinuclease ABC subunit B [Brucella microti CCM 4915]
 gi|256000091|gb|ACU48490.1| excinuclease ABC subunit B [Brucella microti CCM 4915]
          Length = 940

 Score = 1045 bits (2703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93
           +AD  + I  EA K R KN  +   I +R   AS+ G   S    + ++++T        
Sbjct: 36  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95

Query: 94  -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
                      +S    T +VQALA LIQS NPL K+G++WTPHR          I   +
Sbjct: 96  GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE  QRPA+++APN
Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGMRVRYMHSDIDTLERI 634

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D  
Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808


>gi|254730730|ref|ZP_05189308.1| excinuclease ABC subunit B [Brucella abortus bv. 4 str. 292]
 gi|260758452|ref|ZP_05870800.1| excinuclease ABC subunit B [Brucella abortus bv. 4 str. 292]
 gi|260668770|gb|EEX55710.1| excinuclease ABC subunit B [Brucella abortus bv. 4 str. 292]
          Length = 863

 Score = 1045 bits (2703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93
           +AD  + I  EA K R KN  +   I +R   AS+ G   S    + ++++T        
Sbjct: 36  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95

Query: 94  -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
                      +S    T +VQALA LIQS NPL K+G++WTPHR          I   +
Sbjct: 96  GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE  QRPA+++APN
Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 575 PAKTQVDDVLGEIRNTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D  
Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808


>gi|294852830|ref|ZP_06793503.1| excinuclease ABC subunit B [Brucella sp. NVSL 07-0026]
 gi|294821419|gb|EFG38418.1| excinuclease ABC subunit B [Brucella sp. NVSL 07-0026]
          Length = 940

 Score = 1045 bits (2703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93
           +AD  + I  EA K R KN  +   I +R   AS+ G   S    + ++++T        
Sbjct: 36  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95

Query: 94  -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
                      +S    T +VQALA LIQS NPL K+G++WTPHR          I   +
Sbjct: 96  GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE  QRPA+++APN
Sbjct: 155 METSFEPSGDQPTAIRDLMEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSC+DNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 515 RLPSCIDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D  
Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYEHDHV 754

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808


>gi|254704764|ref|ZP_05166592.1| excinuclease ABC subunit B [Brucella suis bv. 3 str. 686]
 gi|261755462|ref|ZP_05999171.1| excinuclease ABC subunit B [Brucella suis bv. 3 str. 686]
 gi|261745215|gb|EEY33141.1| excinuclease ABC subunit B [Brucella suis bv. 3 str. 686]
          Length = 940

 Score = 1045 bits (2702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/774 (64%), Positives = 613/774 (79%), Gaps = 20/774 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93
           +AD  + I  EA K R KN  +   I +R   AS+ G   S    + ++++T        
Sbjct: 36  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95

Query: 94  -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
                      +S    T +VQALA LIQS NPL K+G++WTPHR          I   +
Sbjct: 96  GLDISLEEAAGLSPSGATATVQALANLIQSGNPLFKHGELWTPHRPVRPEKSEGGIPI-R 154

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ ++++ Q+LLGVTGSGKTF MA+VIE  QRPA+++APN
Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFAMAQVIEKTQRPALILAPN 214

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D  
Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808


>gi|161619459|ref|YP_001593346.1| excinuclease ABC subunit B [Brucella canis ATCC 23365]
 gi|260565991|ref|ZP_05836461.1| excinuclease ABC subunit B [Brucella suis bv. 4 str. 40]
 gi|161336270|gb|ABX62575.1| excinuclease ABC, B subunit [Brucella canis ATCC 23365]
 gi|260155509|gb|EEW90589.1| excinuclease ABC subunit B [Brucella suis bv. 4 str. 40]
          Length = 940

 Score = 1045 bits (2701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/774 (64%), Positives = 613/774 (79%), Gaps = 20/774 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93
           +AD  + I  EA K R KN  +   I +R   AS+ G   S    + ++++T        
Sbjct: 36  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95

Query: 94  -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
                      +S    T +VQALA LIQS NPL K+G++WTPHR          I   +
Sbjct: 96  GLDISLEEAAGLSPSGATATVQALANLIQSGNPLFKHGELWTPHRPVRPEKSEGGIPI-R 154

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ ++++ Q+LLGVTGSGKTF MA+VIE  QRPA+++APN
Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFAMAQVIEKTQRPALILAPN 214

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D  
Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808


>gi|254714731|ref|ZP_05176542.1| excinuclease ABC subunit B [Brucella ceti M644/93/1]
 gi|254717791|ref|ZP_05179602.1| excinuclease ABC subunit B [Brucella ceti M13/05/1]
 gi|261219641|ref|ZP_05933922.1| excinuclease ABC subunit B [Brucella ceti M13/05/1]
 gi|261322529|ref|ZP_05961726.1| excinuclease ABC subunit B [Brucella ceti M644/93/1]
 gi|260924730|gb|EEX91298.1| excinuclease ABC subunit B [Brucella ceti M13/05/1]
 gi|261295219|gb|EEX98715.1| excinuclease ABC subunit B [Brucella ceti M644/93/1]
          Length = 940

 Score = 1045 bits (2701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/774 (64%), Positives = 613/774 (79%), Gaps = 20/774 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93
           +AD  + I  EA K R KN  +   I +R   AS+ G   S    + ++++T        
Sbjct: 36  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95

Query: 94  -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
                      +S    T +VQALA LIQS NPL K+G++WTPHR          I   +
Sbjct: 96  GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE  QRPA+++APN
Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMY GDF RKATLAEYGF
Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYHGDFRRKATLAEYGF 514

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D  
Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQTYNEAHGITPASVKKNISDILDSVYERDHV 754

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808


>gi|256061564|ref|ZP_05451706.1| excinuclease ABC subunit B [Brucella neotomae 5K33]
 gi|261325573|ref|ZP_05964770.1| excinuclease ABC subunit B [Brucella neotomae 5K33]
 gi|261301553|gb|EEY05050.1| excinuclease ABC subunit B [Brucella neotomae 5K33]
          Length = 940

 Score = 1045 bits (2701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/774 (64%), Positives = 614/774 (79%), Gaps = 20/774 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93
           +AD  + I  EA K R KN  +   I +R   AS+ G   S    + ++++T        
Sbjct: 36  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95

Query: 94  -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
                      +S    T +VQALA LIQS NPL K+G++WTPHR          I   +
Sbjct: 96  GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE  QRPA+++APN
Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHV++PQI GMYRGDF RKATLAEYGF
Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVSVPQIGGMYRGDFRRKATLAEYGF 514

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D  
Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808


>gi|254689697|ref|ZP_05152951.1| excinuclease ABC subunit B [Brucella abortus bv. 6 str. 870]
 gi|260755232|ref|ZP_05867580.1| excinuclease ABC subunit B [Brucella abortus bv. 6 str. 870]
 gi|260675340|gb|EEX62161.1| excinuclease ABC subunit B [Brucella abortus bv. 6 str. 870]
          Length = 940

 Score = 1045 bits (2701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/774 (64%), Positives = 613/774 (79%), Gaps = 20/774 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93
           +AD  + I  EA K R KN  +   I +R   AS+ G   S    + ++++T        
Sbjct: 36  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95

Query: 94  -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
                      +S    T +VQALA LIQS NPL K+G++WTPHR          I   +
Sbjct: 96  GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE  QRPA+++APN
Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEI 
Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIH 574

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 575 PAKTQVDDVLGEIRNTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 694

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D  
Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808


>gi|148560683|ref|YP_001259390.1| excinuclease ABC subunit B [Brucella ovis ATCC 25840]
 gi|148371940|gb|ABQ61919.1| excinuclease ABC subunit B [Brucella ovis ATCC 25840]
          Length = 940

 Score = 1044 bits (2699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/774 (64%), Positives = 613/774 (79%), Gaps = 20/774 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93
           +AD  + I  EA K R KN  +   I +R   AS+ G   S    + ++++T        
Sbjct: 36  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95

Query: 94  -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
                      +S    T +VQALA LIQS NPL K+G++WTPHR          I   +
Sbjct: 96  GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE  QRPA+++APN
Sbjct: 155 METSFEPSGDQPTAIRDLMEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 394

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 395 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 454

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 455 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 514

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 515 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 574

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 575 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 634

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKE FLRS+TSLIQTIGRAARNV
Sbjct: 635 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEDFLRSETSLIQTIGRAARNV 694

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D  
Sbjct: 695 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 754

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 755 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 808


>gi|319781919|ref|YP_004141395.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167807|gb|ADV11345.1| excinuclease ABC, B subunit [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 1056

 Score = 1036 bits (2678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/728 (66%), Positives = 594/728 (81%), Gaps = 6/728 (0%)

Query: 69  RENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRS 128
           RE TA+     +   IS+ + +T  ++  ++T +V AL+ LI+S NPL K+G +WTPHR 
Sbjct: 114 RERTAAGLNPVAGLDISLEDAET--MASGSVTATVAALSALIESGNPLHKDGVLWTPHRP 171

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
                    I   +M +++ P+GDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMAKV
Sbjct: 172 ARPEKSEGGIAI-KMVSEFEPAGDQPTAIKDLVEGVDNNDRTQVLLGVTGSGKTFTMAKV 230

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE  QRPA+++APNK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+IEKE
Sbjct: 231 IEETQRPALILAPNKTLAAQLYSEFKKFFPENAVEYFVSYYDYYQPEAYVPRTDTFIEKE 290

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINEQIDRMRHSATRSLLER+D I+V+SVSCIYGIGSVE+Y+ M  Q++IGD ++Q+ L
Sbjct: 291 SSINEQIDRMRHSATRSLLERDDVIIVASVSCIYGIGSVETYTAMTFQMQIGDRLDQRAL 350

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L+ LV QQYKRQDI  +RG+FRV GD+IEIFP+HLED AWR+SMFG++IE+I+EF PLTG
Sbjct: 351 LADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAWRISMFGDEIEQITEFDPLTG 410

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           QK   ++++KIYANSHYVTPRPTLN A+K IKEELK RL+ELE+ GRLLEAQRLEQR  +
Sbjct: 411 QKTGELKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLVELERAGRLLEAQRLEQRCRF 470

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEMLE TGSC  IENYSRYLTGR PG+PPPTLFEYIP+++L+F+DESHVT+PQI GMYR
Sbjct: 471 DLEMLEATGSCAGIENYSRYLTGRQPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGMYR 530

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP ++ VSATPG+WE+EQ  G+  EQ+
Sbjct: 531 GDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPLSVAVSATPGAWEMEQAGGVFAEQV 590

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGL+DPPVE+R A++QV+DV  EI    + G R L+TVLTKRMAEDLTEYL+E+ IR
Sbjct: 591 IRPTGLIDPPVEVRPAKSQVDDVVGEIRDTTKAGYRTLVTVLTKRMAEDLTEYLHEQGIR 650

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRYMHS++ TLERIEI+RDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+
Sbjct: 651 VRYMHSDIDTLERIEILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSE 710

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ KVILYAD +T S++ A+ ET RRREKQ+E N  + I P+SVK +
Sbjct: 711 TSLIQTIGRAARNVDGKVILYADQVTGSMERAMAETNRRREKQMEWNAANGITPESVKSR 770

Query: 729 IMEVIDPILLEDAATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           I +++D +  +D    +IS   D     +     KAHL ++ KQM  AA NL+FE+AARI
Sbjct: 771 ISDILDSVYEKDHVRADISQFTDGAGAMMGNNL-KAHLDAMEKQMRDAAANLDFEKAARI 829

Query: 787 RDEIKRLK 794
           RDEIKRL+
Sbjct: 830 RDEIKRLR 837


>gi|260467467|ref|ZP_05813636.1| excinuclease ABC, B subunit [Mesorhizobium opportunistum WSM2075]
 gi|259028749|gb|EEW30056.1| excinuclease ABC, B subunit [Mesorhizobium opportunistum WSM2075]
          Length = 1056

 Score = 1035 bits (2676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/712 (67%), Positives = 585/712 (82%), Gaps = 4/712 (0%)

Query: 84  ISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQM 143
           +S+ E +T  ++   +T +V AL+ LI+S NPL K+G +WTPHR          I   +M
Sbjct: 129 VSLEEAET--MTSSGVTATVAALSALIESGNPLHKDGVLWTPHRPARPEKSEGGIAI-KM 185

Query: 144 QTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNK 203
            +D+ P+GDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMAKVIE  QRPA+++APNK
Sbjct: 186 VSDFEPAGDQPTAIKDLVEGVENNDRTQVLLGVTGSGKTFTMAKVIEETQRPALILAPNK 245

Query: 204 ILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
            LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+IEKESSINEQIDRMRHSAT
Sbjct: 246 TLAAQLYSEFKKFFPDNAVEYFVSYYDYYQPEAYVPRTDTFIEKESSINEQIDRMRHSAT 305

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
           RSLLER+D I+V+SVSCIYGIGSVE+Y+ M  Q++IGD ++Q+ LL+ LV QQYKRQDI 
Sbjct: 306 RSLLERDDVIIVASVSCIYGIGSVETYTAMTFQMQIGDRLDQRALLADLVAQQYKRQDIN 365

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
            +RG+FRV GD+IEIFP+HLED AWR+SMFG++IE+I+EF PLTGQK   ++++KIYANS
Sbjct: 366 FVRGSFRVRGDTIEIFPAHLEDRAWRISMFGDEIEQITEFDPLTGQKTGELKSVKIYANS 425

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
           HYVTPRPTLN A+K IKEELK RL+ELE+ GRLLEAQRLEQR  +DLEMLE TGSC  IE
Sbjct: 426 HYVTPRPTLNQAIKSIKEELKQRLVELERAGRLLEAQRLEQRCRFDLEMLEATGSCAGIE 485

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           NYSRYLTGR PG+PPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGFR
Sbjct: 486 NYSRYLTGRQPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFR 545

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           LPSCMDNRPLRFEEW+ +RP ++ VSATPG WE+EQ  G+  EQ+IRPTGL+DPPVE+R 
Sbjct: 546 LPSCMDNRPLRFEEWDAMRPLSVAVSATPGGWEMEQAGGVFAEQVIRPTGLIDPPVEVRP 605

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           A++QV+DV  EI      G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIE
Sbjct: 606 AKSQVDDVVGEIRETTNAGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIE 665

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           I+RDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+
Sbjct: 666 ILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVD 725

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743
            KVILYAD +T S++ A+ ET RRREKQ+E N  + I P+SVK +I +++D +  +D   
Sbjct: 726 GKVILYADQVTGSMERAMAETNRRREKQMEWNAANGITPESVKSRISDILDSVYEKDHVR 785

Query: 744 TNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +IS       ++     KAHL ++ KQM  AA NL+FE+AARIRDEIKRL+
Sbjct: 786 ADISQFTDSAGAMMGNNLKAHLDAMDKQMRDAAANLDFEKAARIRDEIKRLR 837


>gi|163760755|ref|ZP_02167835.1| excinuclease ABC subunit B [Hoeflea phototrophica DFL-43]
 gi|162282077|gb|EDQ32368.1| excinuclease ABC subunit B [Hoeflea phototrophica DFL-43]
          Length = 982

 Score = 1034 bits (2673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/801 (62%), Positives = 607/801 (75%), Gaps = 38/801 (4%)

Query: 31  EEKQLEVDKTMVADAMRRIRSEAGKHRKNAAK-------RMLIHQRENTASKGEFQSQSS 83
           +E +L+  K       R +RS+AGKHR  A K       +     +  TA K +  ++ +
Sbjct: 47  KEAELDAVKARRKAENRELRSQAGKHRLKAGKTKDEVPAKSPAKGKAATAEKSKKTARGT 106

Query: 84  -----------------------ISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG 120
                                  IS+ E +    +    T +VQAL+ LI+S NPL KNG
Sbjct: 107 SIGSTNDPRARAAAGLNAVAGLDISVEEAEASGATSAN-TATVQALSDLIESGNPLFKNG 165

Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180
           K W PHR          +   +M T+Y P+GDQP AIA L+ G +  E+ Q+LLGVTGSG
Sbjct: 166 KTWVPHRPARPEKSEGGVPI-RMATEYKPAGDQPTAIADLVAGANENERNQVLLGVTGSG 224

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           KTFTMAKVIE  QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR
Sbjct: 225 KTFTMAKVIEETQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPR 284

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           TDT+IEKES++NEQIDRMRHSATR+L+ER+D I+V+SVSCIYGIGSVE+Y+ M  Q+ +G
Sbjct: 285 TDTFIEKESTVNEQIDRMRHSATRALMERDDVIIVASVSCIYGIGSVETYTAMTFQMSVG 344

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           D ++Q++LL+ LV QQYKR+D+   RG+FRV GD+IE+FP+HLED AWR+S+FG++IE I
Sbjct: 345 DRIDQRQLLADLVAQQYKRRDMDFQRGSFRVRGDTIELFPAHLEDAAWRISLFGDEIETI 404

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
            EF PLTG+K  +++++KIYANSHYVTPRPTLN A K+I+EELK RL ELE  GRLLEAQ
Sbjct: 405 VEFDPLTGKKTGDLKSVKIYANSHYVTPRPTLNQATKHIREELKHRLAELEASGRLLEAQ 464

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
           RLEQR  +DLEMLE TG CQ IENYSRYLTGR PGEPPPTLFEYIP+++LLF+DESHV+I
Sbjct: 465 RLEQRTRFDLEMLEATGVCQGIENYSRYLTGRAPGEPPPTLFEYIPDNALLFIDESHVSI 524

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           PQI GMYRGDF RKATLAEYGFRLPSC+DNRPLRFEEW+ +RP T+ VSATPG+WE+EQ 
Sbjct: 525 PQIGGMYRGDFRRKATLAEYGFRLPSCLDNRPLRFEEWDAMRPCTVAVSATPGNWEMEQA 584

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
            G+  EQ+IRPTGL+DPPVE+R A  QV+DV  EI   A+ G R L TVLTKRMAEDLTE
Sbjct: 585 GGVFAEQVIRPTGLIDPPVEVRPAHAQVDDVLGEIRATAEAGYRTLCTVLTKRMAEDLTE 644

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           YL+E+ IRVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECGLVAILDAD
Sbjct: 645 YLHEQGIRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGLVAILDAD 704

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
           KEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S++ A++ET+RRR KQ E+N  + I
Sbjct: 705 KEGFLRSETSLIQTIGRAARNVDGKVILYADKVTGSMERAMEETSRRRAKQEEYNAANGI 764

Query: 721 NPQSVKEKIMEVIDPILLED------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLA 774
            P+SVK  I +++D +   D      +A T       + +L     KAHL++L KQM  A
Sbjct: 765 TPESVKAHISDILDSVYERDHVRASISAPTGKGKGQDEGALVGANLKAHLEALEKQMRDA 824

Query: 775 ADNLNFEEAARIRDEIKRLKS 795
           A +L+FE AAR+RDE+KRLK+
Sbjct: 825 AADLDFETAARLRDEVKRLKA 845


>gi|90418260|ref|ZP_01226172.1| excinuclease ABC, B subunit (helicase subunit of the DNA excision
           repair complex) [Aurantimonas manganoxydans SI85-9A1]
 gi|90337932|gb|EAS51583.1| excinuclease ABC, B subunit (helicase subunit of the DNA excision
           repair complex) [Aurantimonas manganoxydans SI85-9A1]
          Length = 1102

 Score = 1025 bits (2650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/714 (66%), Positives = 581/714 (81%), Gaps = 1/714 (0%)

Query: 82  SSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFF 141
           + + +S +  + + E  +T +V AL +LI   +PLLKNG+IW PHR    +     + F 
Sbjct: 134 AGMDLSLEDAKGLPEGGVTATVDALTKLISEGDPLLKNGEIWVPHRPARPDKSEGGVPF- 192

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +DY P GDQP AIA L+ GI   ++ Q+LLGVTGSGKTF++A VIE  QRPA+++AP
Sbjct: 193 RIASDYTPQGDQPTAIADLVSGITDHDQTQVLLGVTGSGKTFSVANVIERTQRPALILAP 252

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK LAAQLY EFKNFFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRH+
Sbjct: 253 NKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHA 312

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           ATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  Q+ IGD ++Q++LL+ LV QQYKR+D
Sbjct: 313 ATRALLERDDVIIVASVSCIYGIGSVETYTAMTFQMSIGDRLDQRQLLADLVAQQYKRRD 372

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           +   RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I EF PLTGQK  +++++KIYA
Sbjct: 373 MDFQRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIESIQEFDPLTGQKTDSLKSVKIYA 432

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
           NSHYVTPRPTLN A++ IKEEL+ RL+ELEK GRLLEAQRLEQR  +D+EM+E TGSC  
Sbjct: 433 NSHYVTPRPTLNQAVRLIKEELRHRLVELEKAGRLLEAQRLEQRTRFDIEMIEATGSCPG 492

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSRYLTGR PG PPPTLFEY+P+++L+F+DESHVT+PQI  MYRGDF RKATLAEYG
Sbjct: 493 IENYSRYLTGRQPGHPPPTLFEYLPDNALVFIDESHVTVPQIGAMYRGDFRRKATLAEYG 552

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPSCMDNRPLRFEEWN +RP T+ VSATPGSWE+E+  G+  EQ+IRPTGL+DPPVEI
Sbjct: 553 FRLPSCMDNRPLRFEEWNAMRPQTVAVSATPGSWEMEEAGGVFAEQVIRPTGLIDPPVEI 612

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R AR+QV+D+  EI     +G R+L TVLTKRMAEDLTEYL+E+ IRVRYMHS++ TLER
Sbjct: 613 RPARSQVDDLVGEIRDTVDKGYRVLATVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTLER 672

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           IEIIRDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARN
Sbjct: 673 IEIIRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARN 732

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           ++ KVILYAD  T S++ AI ET RRREKQ  +N +H I P SVK +I +++D    +D 
Sbjct: 733 IDGKVILYADRTTGSMERAIAETNRRREKQEAYNAEHGITPASVKAQIADILDSYYEKDH 792

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              ++   A++ ++     K+HL+ L KQM  AA +L+FE AAR+RDEIKRL++
Sbjct: 793 VRVDVGPGAKEGAMVGNNLKSHLEHLEKQMRDAAADLDFETAARLRDEIKRLQA 846


>gi|114706909|ref|ZP_01439809.1| excinuclease ABC subunit B [Fulvimarina pelagi HTCC2506]
 gi|114537857|gb|EAU40981.1| excinuclease ABC subunit B [Fulvimarina pelagi HTCC2506]
          Length = 1094

 Score = 1022 bits (2642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/715 (66%), Positives = 578/715 (80%), Gaps = 2/715 (0%)

Query: 82  SSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFF 141
           + + +S +  + + E  +T +VQAL+ LI S NPL KNG+IW PHR          + F 
Sbjct: 125 AGMDVSLEDAKSLPEGGVTATVQALSDLISSGNPLHKNGEIWLPHRPARPEKSEGGVKF- 183

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +DY P GDQP AIA L+ G+  ++K Q+LLGVTGSGKTFT+A VIE  QRPA+V+AP
Sbjct: 184 RIASDYTPMGDQPTAIADLVSGVSDQDKTQVLLGVTGSGKTFTVANVIERTQRPALVLAP 243

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRH+
Sbjct: 244 NKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHA 303

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           ATR+LLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++LL+ LV QQYKR+D
Sbjct: 304 ATRALLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQLLADLVAQQYKRRD 363

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           +   RG+FRV GD+IEIFP+HLED AWR+SMFG++IE I EF PLTG+K  +++++KIYA
Sbjct: 364 MDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIEAIHEFDPLTGRKTDDLKSVKIYA 423

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
           NSHYVTPRPTLN A+K IKEELK RL ELEK GRLLEAQRLEQR  +D+EM+E TGSC  
Sbjct: 424 NSHYVTPRPTLNQAIKSIKEELKHRLAELEKAGRLLEAQRLEQRTRFDIEMIEATGSCPG 483

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSRYLTGR PG PPPTLFEY+P+++L+F+DESHVT+PQI  MYRGDF RKATLAEYG
Sbjct: 484 IENYSRYLTGRQPGHPPPTLFEYLPDNALVFIDESHVTVPQIGAMYRGDFRRKATLAEYG 543

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPSCMDNRPLRFEEW+ +RP T+ VSATP +WELEQ  G+  EQ+IRPTGL DPPVEI
Sbjct: 544 FRLPSCMDNRPLRFEEWDAMRPQTVAVSATPSTWELEQSGGVFAEQVIRPTGLTDPPVEI 603

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R ARTQV+D+  EI     +G R+L TVLTKRMAEDLTEYL+E+ IRVRYMHS++ TLER
Sbjct: 604 RPARTQVDDLLGEIRETVDRGYRVLCTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTLER 663

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           IEIIRDLRLG FD LVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARN
Sbjct: 664 IEIIRDLRLGAFDCLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARN 723

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           V+ KVILYAD  T S++ AI ET RRREKQL +N +H I P SVK KI +++D    +D 
Sbjct: 724 VDGKVILYADNETGSMKRAIAETDRRREKQLAYNAEHGITPASVKAKIADILDSYYEKDH 783

Query: 742 ATTNISIDAQ-QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              ++   A+ + +      +AH++ L K M  AA +L+FE+AA++RDEIK+L++
Sbjct: 784 VRIDVGGMAEDEGAFVGNNLRAHIEHLEKSMREAAADLDFEKAAKLRDEIKKLQA 838


>gi|110634481|ref|YP_674689.1| excinuclease ABC subunit B [Mesorhizobium sp. BNC1]
 gi|110285465|gb|ABG63524.1| Excinuclease ABC subunit B [Chelativorans sp. BNC1]
          Length = 928

 Score = 1013 bits (2618), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/718 (66%), Positives = 585/718 (81%), Gaps = 7/718 (0%)

Query: 82  SSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFF 141
           + + ++ ++   I+   +T +V AL+ LI+  +P LK+   W PHR          I F 
Sbjct: 84  AGLDVTLEEAERIAPGGVTATVAALSNLIEGGDPNLKSA--WVPHRPPRPEKSEGGIPF- 140

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           +M T++ PSGDQP AI  L++GI + E+ Q+LLGVTGSGKTFTMAKVIE  QRPA+++AP
Sbjct: 141 RMATEFKPSGDQPTAIRDLVEGISTSERTQVLLGVTGSGKTFTMAKVIEETQRPALILAP 200

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHS
Sbjct: 201 NKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHS 260

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           ATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++LL+ LV+QQYKR+D
Sbjct: 261 ATRALLERDDVIIVASVSCIYGIGSVETYTAMTFQMAVGDRLDQRQLLADLVEQQYKRRD 320

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTG+K  +++++KIYA
Sbjct: 321 ADFTRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIEAITEFDPLTGKKTDDLKSVKIYA 380

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
           NSHYVTPRPTLN A++ IKEELK+RL+ELEK GRLLEAQRLEQR  +DLEMLE TGSC  
Sbjct: 381 NSHYVTPRPTLNQAIRQIKEELKLRLVELEKAGRLLEAQRLEQRTRFDLEMLEATGSCAG 440

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSRYLTGRNPGEPPPTLFEY+P+++L+FVDESHVT+PQI  MYRGDF RKATLAEYG
Sbjct: 441 IENYSRYLTGRNPGEPPPTLFEYVPDNALVFVDESHVTVPQIGAMYRGDFRRKATLAEYG 500

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPSCMDNRPLRFEEW+ +RP T+ VSATPG+WE+EQ  G+  EQ+IRPTGL+DPPVEI
Sbjct: 501 FRLPSCMDNRPLRFEEWDAMRPLTVAVSATPGNWEMEQSGGVFAEQVIRPTGLIDPPVEI 560

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R A++QV+DV  EI    + G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ TLER
Sbjct: 561 RPAKSQVDDVLGEIRETTKAGYRTLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTLER 620

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           IEIIRDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAARN
Sbjct: 621 IEIIRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAARN 680

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           V+ +VILYAD IT S++ AI ET RRREKQLE+N  + I P+S+K+ I +++  +   D 
Sbjct: 681 VDGRVILYADHITGSMERAIAETNRRREKQLEYNAGNGITPESIKKNIGDILGSVYERDH 740

Query: 742 ATTNISIDAQQLSLSKKKG---KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
               I   A+   L+   G   +AHL+ L K M  AA +L+FEEAAR+RDEIKRL+ +
Sbjct: 741 VRAEIG-GAKGDDLNNLVGNNLQAHLEYLEKAMRDAAADLDFEEAARLRDEIKRLRET 797


>gi|319408898|emb|CBI82555.1| excinuclease ABC, subunit B [Bartonella schoenbuchensis R1]
          Length = 855

 Score = 1011 bits (2615), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/710 (67%), Positives = 577/710 (81%), Gaps = 2/710 (0%)

Query: 85  SMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQ 144
           + S+  +   ++  +T +V+AL+ LI SDNPL KNG +WTPHR          I F Q+ 
Sbjct: 48  AASDFTSHNATKTGVTATVEALSTLIASDNPLFKNGTVWTPHRPIRPEKSEGGIPF-QIN 106

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           T + P+GDQPAAI  L++G+   E+ Q+LLG+TGSGKT+TMAK+IE  QRPA+++APNK 
Sbjct: 107 TPFEPAGDQPAAIKALVEGVERNERTQVLLGITGSGKTYTMAKIIEETQRPALILAPNKT 166

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
           LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR
Sbjct: 167 LAAQLYGEFKSFFPKNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATR 226

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           ++LER+D I+V+SVSCIYGIGSVE+Y+ M  Q++ GD + Q++LL+ LV QQY+RQDI  
Sbjct: 227 AVLERDDVIIVASVSCIYGIGSVETYTAMTFQMQKGDKLNQRQLLADLVTQQYRRQDINF 286

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            RG+FRV GD+IEIFPSHLED AWR+S+FG++IE I+EF PLTGQK  ++++IKIYANSH
Sbjct: 287 TRGSFRVRGDTIEIFPSHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLQSIKIYANSH 346

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
           YVTPRPTLN A+K IK EL  RL EL   GRLLEAQRLEQR  +DLEMLETTGSC  IEN
Sbjct: 347 YVTPRPTLNQAIKAIKMELAQRLDELNSVGRLLEAQRLEQRTIFDLEMLETTGSCSGIEN 406

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
           YSRYLTGRNPGEPPPT+FEYIP ++L+F+DESHVTIPQI GMYRGDF RKATLAEYGFRL
Sbjct: 407 YSRYLTGRNPGEPPPTMFEYIPNNALIFIDESHVTIPQIGGMYRGDFRRKATLAEYGFRL 466

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           PSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ  G+ VEQIIRPTGL+DP  ++R A
Sbjct: 467 PSCMDNRPLRFEEWDAMRPQTIAVSATPGRWEIEQTCGVFVEQIIRPTGLIDPLTQVRPA 526

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R QV+DV +EI    ++G R L+TVLTKRMAEDLTEYL+E NIRVRYMHS++ TLERIEI
Sbjct: 527 RIQVDDVMNEIRKTIKKGYRTLVTVLTKRMAEDLTEYLHEHNIRVRYMHSDIDTLERIEI 586

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +RDLRLG FDVL+GINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ 
Sbjct: 587 LRDLRLGTFDVLIGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDG 646

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
            VILYADTIT SI+ A+ ETTRRR+KQ+ +N++H+I P S+++ I +V++ +  E+    
Sbjct: 647 HVILYADTITNSIERALQETTRRRQKQIAYNEEHHITPTSIQKNIGDVLNSV-YENNHHA 705

Query: 745 NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +I     Q +        H++ L K M  AA NLNFEEAAR+RDEIKRL+
Sbjct: 706 DIPDFIAQNNKVDNNLANHIQHLEKSMREAAANLNFEEAARLRDEIKRLQ 755


>gi|319403836|emb|CBI77422.1| excinuclease ABC, subunit B [Bartonella rochalimae ATCC BAA-1498]
          Length = 806

 Score = 1010 bits (2612), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/711 (67%), Positives = 579/711 (81%), Gaps = 3/711 (0%)

Query: 85  SMSEKQTREISE-QTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQM 143
           +++ K ++ I++  ++T +V+AL+ LI   NPL KNG +WTPHR          I F Q+
Sbjct: 44  TINTKPSKNITKTNSVTATVEALSALIALGNPLFKNGALWTPHRPIRPEKSEGGIPF-QI 102

Query: 144 QTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNK 203
           +T + P+GDQP AI  L++GI   E+ Q+LLGVTGSGKT+TMAK+IE  QRPA+++APNK
Sbjct: 103 KTSFQPAGDQPIAIKSLVEGIKRNERTQVLLGVTGSGKTYTMAKIIEKTQRPALILAPNK 162

Query: 204 ILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
            LAAQLY EFKNFFP+NAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+AT
Sbjct: 163 TLAAQLYGEFKNFFPNNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAAT 222

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
           R++LER+D I+++SVSCIYGIGSVE+Y+ M  Q++ GD ++Q++LL+ LV QQY+RQDI 
Sbjct: 223 RAVLERDDVIIIASVSCIYGIGSVETYTAMTFQMQKGDKLDQQKLLTDLVSQQYQRQDIN 282

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
            +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  ++++IKIYANS
Sbjct: 283 FVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTADLQSIKIYANS 342

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
           HYVTPRPTLN A+K IK EL  RL EL   GRLLEAQRLEQR  +DLEMLETTGSC  IE
Sbjct: 343 HYVTPRPTLNQAIKSIKMELVKRLDELNAAGRLLEAQRLEQRTIFDLEMLETTGSCSGIE 402

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           NYSRYLTGR PGEPPPTLFEYIP  +L+F+DESHVTIPQI GMYRGDF RKATLAEYGFR
Sbjct: 403 NYSRYLTGRKPGEPPPTLFEYIPSHALVFIDESHVTIPQIGGMYRGDFRRKATLAEYGFR 462

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           LPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ QGI VEQ+IRPTGL+DPP EIR 
Sbjct: 463 LPSCMDNRPLRFEEWDAMRPQTIAVSATPGRWEIEQSQGIFVEQVIRPTGLIDPPTEIRP 522

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
            +TQV+D  +EI+   ++G R L+TVLTKRMAEDLTEYL+E+NIRVRYMHS++ TLERIE
Sbjct: 523 VKTQVDDAVNEIHQTIKKGYRTLITVLTKRMAEDLTEYLHEQNIRVRYMHSDINTLERIE 582

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           I+RDLRLG FDVL+GINLLREGLDIPECG VAI DADKEGFLRS+TSLIQ IGRAARNV 
Sbjct: 583 ILRDLRLGTFDVLIGINLLREGLDIPECGFVAIFDADKEGFLRSETSLIQMIGRAARNVE 642

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743
           S+VILYADTIT SIQ A+ ET RRR+KQ+ +NK+H I P S+K+ I +++  +  E+   
Sbjct: 643 SRVILYADTITGSIQRALQETKRRRQKQIAYNKEHQITPTSIKKNIDDILSSV-CENNHN 701

Query: 744 TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             IS    Q +        H++ L K M  AA++LNFEEAA+ RDEIKRL+
Sbjct: 702 VKISHFITQNNKVGNNLTNHIQHLEKLMRKAANDLNFEEAAQFRDEIKRLQ 752


>gi|328542853|ref|YP_004302962.1| Helicase subunit of the DNA excision repair complex [polymorphum
           gilvum SL003B-26A1]
 gi|326412599|gb|ADZ69662.1| Helicase subunit of the DNA excision repair complex [Polymorphum
           gilvum SL003B-26A1]
          Length = 1059

 Score = 1009 bits (2609), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/700 (66%), Positives = 567/700 (81%), Gaps = 2/700 (0%)

Query: 97  QTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAA 156
           Q  T +V AL+ LI+S NPL KNG IW PHR          +   ++ ++Y P+GDQP A
Sbjct: 185 QGATATVAALSALIESGNPLHKNGDIWVPHRPERPAKSEGGVPI-KLVSEYEPAGDQPTA 243

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           IA+L+ G+ S E+ Q+LLGVTGSGKT+TMA+VI   QRPA+++APNK LAAQLY EFK+F
Sbjct: 244 IAELVGGVESGEQTQVLLGVTGSGKTYTMAQVIARTQRPALILAPNKTLAAQLYGEFKSF 303

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           FP NAVEYFVSYYDYYQPEAYVPRTDTYIEKESS+NEQIDRMRH+ATR+LLER+D I+V+
Sbjct: 304 FPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSVNEQIDRMRHAATRALLERDDVIIVA 363

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           SVSCIYGIGSVE+Y+ M   L++G+ ++Q++LL+ LV  QYKR D    RG+FRV GD++
Sbjct: 364 SVSCIYGIGSVETYTAMTFALEVGERIDQRQLLADLVALQYKRNDAAFQRGSFRVRGDTV 423

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           E+FP+H ED AWR+S+FG+++E I+EF PLTG+K   ++++KIYANSHYVTP+PTL  A+
Sbjct: 424 ELFPAHYEDRAWRISLFGDEVEAITEFDPLTGKKSGEMKSVKIYANSHYVTPKPTLAQAI 483

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           K IK ELK RL EL   GRLLEAQRLEQR  +DLEMLE TGSC  IENYSRYLTGR PGE
Sbjct: 484 KSIKAELKTRLDELNAHGRLLEAQRLEQRTIFDLEMLEATGSCAGIENYSRYLTGRAPGE 543

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
           PPPTLFEY+P+D+L+F+DESHVT+PQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFE
Sbjct: 544 PPPTLFEYLPDDALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFE 603

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           EWN +RP T+ VSATPGSWE+EQ  G+  EQ+IRPTGLVDPPV+IR A +QV+D+  E+ 
Sbjct: 604 EWNAMRPQTVCVSATPGSWEMEQSGGVFAEQVIRPTGLVDPPVDIRPASSQVDDLLGEVR 663

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             A +G R L+T LTKRMAEDLTEYL+E  +RVRYMHS++ TLERIEIIRDLRLG FDVL
Sbjct: 664 AVAAKGYRTLVTTLTKRMAEDLTEYLHENGVRVRYMHSDIDTLERIEIIRDLRLGAFDVL 723

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           VGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYADT+T S
Sbjct: 724 VGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADTMTGS 783

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
           ++ AI ET RRR+KQL +N +H I P+SVK  I +++D +  +D  T +    A+  SL 
Sbjct: 784 MERAIAETNRRRDKQLAYNAEHGITPESVKRSIADILDSVYEQDHVTVDAGF-AEAGSLV 842

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
               KAH++SL K+M  AA +L FE AAR+RDEIKRL+ +
Sbjct: 843 GHNLKAHIESLEKRMREAAADLEFETAARLRDEIKRLQET 882


>gi|163867953|ref|YP_001609157.1| excinuclease ABC subunit B [Bartonella tribocorum CIP 105476]
 gi|161017604|emb|CAK01162.1| excinuclease ABC, subunit B [Bartonella tribocorum CIP 105476]
          Length = 711

 Score = 1009 bits (2608), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/696 (68%), Positives = 568/696 (81%), Gaps = 1/696 (0%)

Query: 99  MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158
           +T +V+AL+ LI S NPL KNG +WTPHR          I F Q++T +  +GDQP AI 
Sbjct: 5   VTATVEALSALIASGNPLFKNGALWTPHRPIPPEKSEGGIPF-QLETSFKAAGDQPQAIK 63

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            L++GI   E+ Q+LLGVTGSGKT+TMAKVIE  QRPA+++APNK LAAQLY EFK+FFP
Sbjct: 64  TLVEGIEKDERTQVLLGVTGSGKTYTMAKVIEQTQRPALILAPNKTLAAQLYGEFKSFFP 123

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
           HNAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR++LER+D I+V+SV
Sbjct: 124 HNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATRAVLERDDVIIVASV 183

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           SCIYGIGSVE+Y+ M  Q++ GD + Q++LL+ LV QQY RQDI   RG+FRV GD+IEI
Sbjct: 184 SCIYGIGSVETYTAMTFQIEKGDKLNQRKLLADLVSQQYYRQDINFTRGSFRVRGDTIEI 243

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP HLED AWR+S+FG+++E I+EF PLTGQK  ++++IKIYANSHYV PRPTLN AMK 
Sbjct: 244 FPVHLEDRAWRISLFGDEVETITEFDPLTGQKTEDLQSIKIYANSHYVIPRPTLNQAMKA 303

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           IK EL  RL EL   GRLLEAQRLEQR  +DLEMLETTGSC  IENYSRYLTGRNPGEPP
Sbjct: 304 IKMELAQRLDELNAAGRLLEAQRLEQRTIFDLEMLETTGSCPGIENYSRYLTGRNPGEPP 363

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           PTLFEYIP ++L+F+DESHVTIPQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW
Sbjct: 364 PTLFEYIPLNALVFIDESHVTIPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEW 423

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           + +RP TI VSATPG WE+EQ  GI  EQIIRPTGLVDP  EIR ARTQV+DV +EI   
Sbjct: 424 DAMRPQTIAVSATPGRWEIEQSHGIFAEQIIRPTGLVDPETEIRPARTQVDDVVNEIRNT 483

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q+G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ TLERIEI+RDLRLG FDVL+G
Sbjct: 484 IQKGYRTLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTLERIEILRDLRLGTFDVLIG 543

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           INLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYADTIT SI+
Sbjct: 544 INLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADTITGSIE 603

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
            A+ ET RRR+KQ+ +NK+H+I P S+K+ I ++++         T IS    Q ++   
Sbjct: 604 RALQETQRRRQKQITYNKEHHITPTSIKKNIDDILNAGNENQKTLTRISNFITQNNMDHN 663

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              +H++SL K M  AA +LNFEEAAR+RDEIK+L+
Sbjct: 664 NLASHIQSLEKSMRKAAADLNFEEAARLRDEIKQLQ 699


>gi|118591823|ref|ZP_01549218.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
           motif A (P-loop):UvrB/UvrC protein:Excinuclease ABC, B
           [Stappia aggregata IAM 12614]
 gi|118435466|gb|EAV42112.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
           motif A (P-loop):UvrB/UvrC protein:Excinuclease ABC, B
           [Stappia aggregata IAM 12614]
          Length = 976

 Score = 1009 bits (2608), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/700 (66%), Positives = 571/700 (81%), Gaps = 2/700 (0%)

Query: 97  QTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAA 156
           Q  T +V+AL+ LI+S NPL KNG++W PHR          +    +++ Y P GDQP A
Sbjct: 157 QGATATVEALSALIESGNPLHKNGELWVPHRPERPEKSEGGVPIV-LKSAYEPKGDQPTA 215

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           IA L++G+ + E+ Q+LLGVTGSGKT+TMA+VI   QRPA+++APNK LAAQLY EFK+F
Sbjct: 216 IADLVEGMENGEQTQVLLGVTGSGKTYTMAQVISRTQRPALILAPNKTLAAQLYGEFKSF 275

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           FP NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER+D I+V+
Sbjct: 276 FPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERDDVIIVA 335

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           SVSCIYGIGSVE+Y+ M   +++G+ ++Q++L++ LV  QYKR D    RGTFRV GD+I
Sbjct: 336 SVSCIYGIGSVETYTAMTFAIEVGERMDQRQLIADLVALQYKRNDAAFQRGTFRVRGDTI 395

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           E+FP+H ED AWR+SMFG++IE I+EF PLTGQK   ++++KIYANSHYVTP+PTLN A+
Sbjct: 396 ELFPAHYEDTAWRISMFGDEIESITEFDPLTGQKSGELKSVKIYANSHYVTPKPTLNQAI 455

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           K IK+ELK RL EL + GRLLEAQRLEQR  +DLEMLE TGSC  IENYSRYLTGR PGE
Sbjct: 456 KSIKDELKHRLEELNQHGRLLEAQRLEQRTMFDLEMLEATGSCAGIENYSRYLTGRKPGE 515

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
           PPPTLFEY+P+++++F DESHVTIPQI  MYRGDF RKATLAEYGFRLPSCMDNRPLRFE
Sbjct: 516 PPPTLFEYLPDNAIVFADESHVTIPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFE 575

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           EWN +RP +I VSATPGSWE+EQ  G+  EQ+IRPTGL+DPPVEIR A +QV+D+  E+ 
Sbjct: 576 EWNAMRPQSIAVSATPGSWEMEQAGGVFAEQVIRPTGLIDPPVEIRPATSQVDDLLGEVR 635

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             AQ+G R L+T LTKRMAEDLTEYL+E  +RVRYMHS++ TLERIEI+RDLRLG FDVL
Sbjct: 636 EVAQKGYRTLVTTLTKRMAEDLTEYLHENGVRVRYMHSDIDTLERIEILRDLRLGAFDVL 695

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           VGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S
Sbjct: 696 VGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGS 755

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
           ++ AI ET RRREKQL +N++H I P+SV+  I ++++ +  +D  T +    A++ +L 
Sbjct: 756 MERAIAETNRRREKQLAYNEEHGITPESVRRSIGDILESVYEQDHVTIDAGF-AEEGNLV 814

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
               KAH++ L KQM  AA +L+FE AAR+RDEIKRL+++
Sbjct: 815 GHNLKAHIEDLEKQMRDAAADLDFETAARLRDEIKRLQAT 854


>gi|49474492|ref|YP_032534.1| excinuclease ABC subunit B [Bartonella quintana str. Toulouse]
 gi|49239996|emb|CAF26410.1| Excinuclease ABC subunit b [Bartonella quintana str. Toulouse]
          Length = 774

 Score = 1008 bits (2605), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/696 (68%), Positives = 568/696 (81%), Gaps = 1/696 (0%)

Query: 99  MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158
           +T +V+AL+ LI SDNP  KNG +WTPHR          I   Q++T +  +GDQP AI 
Sbjct: 5   VTATVEALSALIASDNPFFKNGALWTPHRPVRPKKSEGGIPL-QLETSFEAAGDQPQAIK 63

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            L++GI   E+ Q+LLGVTGSGKT+TMAK+IE  QRPA+++APNK LAAQLY EFK+FFP
Sbjct: 64  TLVEGIEKDERTQVLLGVTGSGKTYTMAKIIEKTQRPALILAPNKTLAAQLYGEFKSFFP 123

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
           HNAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR++LER+D I+V+SV
Sbjct: 124 HNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATRAVLERDDVIIVASV 183

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           SCIYGIGSVE+Y+ M  Q+K GD + Q++LL+ LV Q Y RQDI  IRG+FRV GD+IEI
Sbjct: 184 SCIYGIGSVETYTAMTFQIKKGDRLNQRQLLADLVAQHYHRQDINFIRGSFRVRGDTIEI 243

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP+HLED AWR+S+FG+++E I+EF PLTGQK  +++ IKIYANSHYVTPRPTLN A+K 
Sbjct: 244 FPAHLEDRAWRISLFGDEVETITEFDPLTGQKTSDLQFIKIYANSHYVTPRPTLNQAIKS 303

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           IK EL  RL EL   GRLLEAQRLEQR  +DLEMLE TGSC  IENYSRYLTGR PGEPP
Sbjct: 304 IKMELVQRLDELNAAGRLLEAQRLEQRTIFDLEMLEATGSCPGIENYSRYLTGRKPGEPP 363

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           PTLFEYIP ++L+F+DESHVTIPQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRF+EW
Sbjct: 364 PTLFEYIPNNALVFIDESHVTIPQICGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFKEW 423

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           + +RP TI VSATPG WE+EQ  GI VEQIIRPTGL+DPP E+R A TQV+DV +EI   
Sbjct: 424 DLMRPQTIAVSATPGRWEIEQSHGIFVEQIIRPTGLIDPPTEVRPASTQVDDVVNEIRNT 483

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q+G R L+TVLTKRMAEDLTEYL+E+ IRV YMHS++ TLERIEI+R+LRLG FDVL+G
Sbjct: 484 IQKGYRTLVTVLTKRMAEDLTEYLHEQGIRVHYMHSDIDTLERIEILRNLRLGAFDVLIG 543

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           INLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYADTIT SI+
Sbjct: 544 INLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADTITGSIE 603

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
            A+ ET RRR+KQ+ +N++H+I P S+K+ I ++++     D   TNIS    Q S +  
Sbjct: 604 RALQETQRRRQKQIAYNEEHHITPTSIKKNISDILNSGSKNDHPHTNISDFVTQNSRAGN 663

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               H++ L+K MH AA +LNFEEAAR+RDEIK+L+
Sbjct: 664 NLAKHIQYLKKSMHEAAADLNFEEAARLRDEIKQLQ 699


>gi|49475895|ref|YP_033936.1| excinuclease ABC subunit B [Bartonella henselae str. Houston-1]
 gi|49238703|emb|CAF27955.1| Excinuclease ABC subunit b [Bartonella henselae str. Houston-1]
          Length = 770

 Score = 1007 bits (2604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/696 (68%), Positives = 567/696 (81%), Gaps = 1/696 (0%)

Query: 99  MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158
           +T +V+AL+ LI S NPL KNG +WTPHR          I F Q++T +  SGDQP AI 
Sbjct: 5   VTATVEALSALIASGNPLFKNGALWTPHRPVRPEKSEGGIPF-QLETSFEASGDQPQAIK 63

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            L++GI   E+ Q+LLGVTGSGKT+TMAK+IE  QRPA+++APNK LAAQLY EFK+FFP
Sbjct: 64  TLVEGIEKNERTQVLLGVTGSGKTYTMAKIIEKTQRPALILAPNKTLAAQLYGEFKSFFP 123

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
           HNAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR++LER+D I+V+SV
Sbjct: 124 HNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATRAVLERDDVIIVASV 183

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           SCIYGIGSVE+Y+ M +Q+K GD + Q++ L+ LV Q Y RQDI  IRG+FRV GD+IEI
Sbjct: 184 SCIYGIGSVETYTAMTLQIKKGDKLNQRQFLADLVSQHYYRQDINFIRGSFRVRGDTIEI 243

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP+HLED AWR+S+FG+++E I+EF PLTGQK  ++++IKIYANSHYV PRPTLN AMK 
Sbjct: 244 FPAHLEDRAWRISLFGDEVETITEFDPLTGQKTGDLQSIKIYANSHYVIPRPTLNQAMKA 303

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           IK EL  RL EL K GRLLEAQRLEQR  +DLEMLETTGSC  IENYSRYLTGR PGEPP
Sbjct: 304 IKTELVQRLDELNKAGRLLEAQRLEQRTMFDLEMLETTGSCAGIENYSRYLTGRQPGEPP 363

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           PTLFEYIP ++L+F+DESHVTIPQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW
Sbjct: 364 PTLFEYIPNNALVFIDESHVTIPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEW 423

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           + +RP TI VSATPG WE+EQ  GI  EQIIRPTGLVDPP E+R A +QV+DV +EI+  
Sbjct: 424 DAMRPQTIAVSATPGRWEIEQSHGIFAEQIIRPTGLVDPPTEVRPASSQVDDVVNEIHKT 483

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q+G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ TLERIEI+RDLRLG FDVL+G
Sbjct: 484 IQKGYRTLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTLERIEILRDLRLGAFDVLIG 543

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           INLLREGLDIPECG VAILDADKEGFLRS+TSL+QTIGRAARNV+ +VILYAD IT SI+
Sbjct: 544 INLLREGLDIPECGFVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADIITGSIE 603

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
            A+ ET RRREKQ+ +N+KH+I P S+K+ I ++++         TNI     Q S +  
Sbjct: 604 RALQETQRRREKQIAYNEKHHIKPTSIKKNIDDILNSGGENGYTHTNIPDFITQNSKTGN 663

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               H++ L K M  AA NL+FEEAAR+RDEIK+L+
Sbjct: 664 NLAKHIQYLEKSMREAAANLHFEEAARLRDEIKKLQ 699


>gi|240850160|ref|YP_002971553.1| excinuclease ABC subunit B [Bartonella grahamii as4aup]
 gi|240267283|gb|ACS50871.1| excinuclease ABC subunit B [Bartonella grahamii as4aup]
          Length = 769

 Score = 1007 bits (2604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/697 (68%), Positives = 574/697 (82%), Gaps = 3/697 (0%)

Query: 99  MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158
           +T +V+AL+ LI S NPL KNG +WTPHR          I F Q++T + P+GDQP AI 
Sbjct: 5   VTATVEALSALIASGNPLFKNGALWTPHRPVRPEKSEGGIPF-QLETPFEPAGDQPQAIK 63

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            L++GI   E+ Q+LLGVTGSGKT+TMAK+IE  QRPA+++APNK LAAQLY EFK+FFP
Sbjct: 64  TLVEGIQKDERTQVLLGVTGSGKTYTMAKIIEKTQRPALILAPNKTLAAQLYGEFKSFFP 123

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
           HNAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR++LER+D I+V+SV
Sbjct: 124 HNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATRAVLERDDVIIVASV 183

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           SCIYGIGSVE+Y+ M  +++ GD + Q++LL+ LV QQY RQDI  IRG+FRV GD+IEI
Sbjct: 184 SCIYGIGSVETYTAMTFKIEKGDKLNQRKLLADLVSQQYYRQDINFIRGSFRVRGDTIEI 243

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP+HLED AWR+S+FG+++E I+EF PLTGQK  ++++IKIYANSHYVTPRPTLN AMK 
Sbjct: 244 FPAHLEDHAWRISLFGDEVETITEFDPLTGQKTGDLQSIKIYANSHYVTPRPTLNQAMKS 303

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           IK EL  RL EL   GRLLEAQRLEQR  +DLEMLETTGSC  IENYSRYLTGR PGEPP
Sbjct: 304 IKMELAQRLDELNAAGRLLEAQRLEQRTIFDLEMLETTGSCSGIENYSRYLTGRKPGEPP 363

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           PTLFEYIP ++L+F+DESHVTIPQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW
Sbjct: 364 PTLFEYIPNNALVFIDESHVTIPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEW 423

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           + +RP TI VSATPG WE+EQ  G   EQIIRPTGL+DPP E+R A  QV+DV +EI   
Sbjct: 424 DAMRPQTIAVSATPGRWEIEQSHGTFAEQIIRPTGLIDPPTEVRPASNQVDDVVNEIRKT 483

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q+G R L+TVLTKRMAEDLTEYL+E++IRVRYMHS++ TLERIEI+RDLRLG FDVL+G
Sbjct: 484 IQKGYRTLVTVLTKRMAEDLTEYLHEQDIRVRYMHSDIDTLERIEILRDLRLGTFDVLIG 543

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           INLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYADTIT SI+
Sbjct: 544 INLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADTITGSIE 603

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA-QQLSLSK 757
            A+ ET RRR+KQ+ +N++H+I P+S+K+ I ++++    E+     I+ D  ++ ++  
Sbjct: 604 RALQETQRRRQKQIAYNEEHHITPKSIKKNIGDILNS-GYENNHIRTITPDVIEKKNMVG 662

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               +H+K L K MH AA +LNFEEAAR+RDEIK+L+
Sbjct: 663 NNLASHIKHLEKLMHEAAADLNFEEAARLRDEIKQLQ 699


>gi|121602199|ref|YP_989264.1| excinuclease ABC subunit B [Bartonella bacilliformis KC583]
 gi|120614376|gb|ABM44977.1| excinuclease ABC, B subunit [Bartonella bacilliformis KC583]
          Length = 780

 Score = 1006 bits (2602), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/700 (68%), Positives = 575/700 (82%), Gaps = 1/700 (0%)

Query: 95  SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQP 154
           +E+ +T +V+AL+ LI S NPL KNG++WTPHR       S+  T FQ++T + P+GDQP
Sbjct: 58  TEKGVTATVEALSALIASGNPLFKNGELWTPHRPIR-PEKSESGTPFQIKTPFEPAGDQP 116

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            AI  L++GI   E+ Q+LLGVTGSGKT+TMAK+IE  QRPA+++APNK LAAQLY EFK
Sbjct: 117 TAIETLVEGIKKNERTQVLLGVTGSGKTYTMAKIIEITQRPALILAPNKTLAAQLYGEFK 176

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           NFFPHNAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR++LER+D I+
Sbjct: 177 NFFPHNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATRAVLERDDVII 236

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           V+SVSCIYGIGSVE+Y+ M  Q+K GD + Q++LL+ LV QQY+RQDI  +RG+FRV GD
Sbjct: 237 VASVSCIYGIGSVETYTAMTFQIKKGDRLNQRQLLADLVAQQYQRQDINFVRGSFRVRGD 296

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
           +IEIFP+HLED +WR+S+FG+++E I+EF PLTG+K  ++++IKIYANSHYVTPRPTLN 
Sbjct: 297 TIEIFPAHLEDRSWRISLFGDEVETITEFDPLTGKKTDDLQSIKIYANSHYVTPRPTLNQ 356

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A+K IK EL  RL EL    RLLEAQRLEQR  +DLEMLETTGSC  IENYSRYLTGR P
Sbjct: 357 AIKSIKMELAARLDELNSADRLLEAQRLEQRTRFDLEMLETTGSCSGIENYSRYLTGRKP 416

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
           GEPPPTLFEYIP+++L+F+DESHVTIPQISGMYRGDF RKATLAEYGFRLPSCMDNRPLR
Sbjct: 417 GEPPPTLFEYIPDNALVFIDESHVTIPQISGMYRGDFRRKATLAEYGFRLPSCMDNRPLR 476

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           FEEW+ +RP TI VSATPG WE+EQ  G   EQ+IRPTGLVDP  EIR ARTQV+DV  E
Sbjct: 477 FEEWDAMRPQTIAVSATPGRWEIEQTCGTFAEQVIRPTGLVDPLTEIRPARTQVDDVVHE 536

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I    ++G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ TLERIEI+RDLRLG FD
Sbjct: 537 IRTTIKKGYRTLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTLERIEILRDLRLGTFD 596

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VL+GINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYADTIT
Sbjct: 597 VLIGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADTIT 656

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
            SI  A+ ET RRR+KQ+++N+KH+I P SVK+ I ++++ +   +    +I     Q +
Sbjct: 657 GSIARALQETKRRRQKQIDYNQKHHIIPTSVKKNISDILNLVGDNNPIGKDIPNFVTQQN 716

Query: 755 LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +      H+K L K M  AA +LNFEEAAR+RD IK+L+
Sbjct: 717 RTGDTLTNHIKRLEKLMREAAADLNFEEAARLRDNIKQLQ 756


>gi|319405276|emb|CBI78890.1| excinuclease ABC, subunit B [Bartonella sp. AR 15-3]
          Length = 807

 Score = 1005 bits (2598), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/699 (67%), Positives = 575/699 (82%), Gaps = 8/699 (1%)

Query: 99  MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158
           +T +V+ L+ LI S NPL KNG +WTPHR          I F Q++T + P+GDQP AI 
Sbjct: 59  VTATVETLSALIASSNPLFKNGALWTPHRPIRPEKSEGGIQF-QIKTSFQPAGDQPIAIK 117

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            L++GI  +E+ Q+LLGVTGSGKT+TMAK+IE  QRPA+++APNK LAAQLY EFKNFFP
Sbjct: 118 SLVEGIKKKERTQVLLGVTGSGKTYTMAKIIEKTQRPALILAPNKTLAAQLYGEFKNFFP 177

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
           +NAVEYFVSYYDYYQPEAYV R+DTYIEKE+SINEQIDRMRH+ATR++LER+D I+++SV
Sbjct: 178 NNAVEYFVSYYDYYQPEAYVARSDTYIEKEASINEQIDRMRHAATRAVLERDDVIIIASV 237

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           SCIYGIGSVE+Y+ M  Q++ G+ ++Q++LL+ LV QQY+RQDI  +RG+FRV GD+IEI
Sbjct: 238 SCIYGIGSVETYTAMTFQMQKGNKLDQQKLLTDLVAQQYQRQDINFVRGSFRVRGDTIEI 297

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP+HLED AWR+S+FG++IE I+EF PLTGQK  ++++IKIYANSHYV PRPTLN A+K 
Sbjct: 298 FPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLQSIKIYANSHYVIPRPTLNQAIKS 357

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           IK EL  RL EL   GRLLEAQRLEQR  +DLEMLETTGSC  IENYSRYLTGR PGEPP
Sbjct: 358 IKIELTKRLDELNAAGRLLEAQRLEQRTIFDLEMLETTGSCPGIENYSRYLTGRKPGEPP 417

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           PTLFEYIP  +L+F+DESHVTIPQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW
Sbjct: 418 PTLFEYIPNHALVFIDESHVTIPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEW 477

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           + +RP TI VSATPG WE+EQ +GI VEQIIRPTGL+DPP EIR  +TQV+DV +EI+  
Sbjct: 478 DAMRPQTIAVSATPGHWEIEQSRGIFVEQIIRPTGLIDPPTEIRPVKTQVDDVINEIHQT 537

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++G R L+TVLTKRMAEDLTEYL+E+NIRVRYMHS++ TLERIEI+RDLRLG FDVL+G
Sbjct: 538 IKKGYRTLITVLTKRMAEDLTEYLHEQNIRVRYMHSDINTLERIEILRDLRLGTFDVLIG 597

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           INLLREGLDIPECG VAI DADKEGFLRS+TSLIQ IGRAARNV S+VILYAD IT SI+
Sbjct: 598 INLLREGLDIPECGFVAIFDADKEGFLRSETSLIQMIGRAARNVESRVILYADKITGSIE 657

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
            A+ ET RRREKQ+ +N++H I P S+K+ I +++  +   D    NI I +  ++ + K
Sbjct: 658 RALQETKRRREKQIAYNEEHQITPTSIKKNIDDILSSVYENDH---NIKI-SHFITQNNK 713

Query: 759 KG---KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            G     H++ L+K M  AAD+LNFEEAA++RDEIKRL+
Sbjct: 714 VGDNLTNHIQHLKKLMRKAADDLNFEEAAQLRDEIKRLQ 752


>gi|319406846|emb|CBI80481.1| excinuclease ABC, subunit B [Bartonella sp. 1-1C]
          Length = 764

 Score = 1004 bits (2597), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/711 (66%), Positives = 578/711 (81%), Gaps = 3/711 (0%)

Query: 85  SMSEKQTREISEQT-MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQM 143
           +++ K ++ I++   +T +V+AL+ LI S NPL KNG +WTPHR          I F Q+
Sbjct: 44  TINTKPSKNITKTNGITATVEALSALIASGNPLFKNGALWTPHRPIRPEKSEGGIPF-QI 102

Query: 144 QTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNK 203
           +T + P+GDQP AI  L++GI   E+ Q+LLGVTGSGKT+TMAK+IE  QRPA+++APNK
Sbjct: 103 KTSFQPAGDQPIAIKSLVEGIKRNERTQVLLGVTGSGKTYTMAKIIEKTQRPALILAPNK 162

Query: 204 ILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
            LAAQLY EFKNFFP+NAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+AT
Sbjct: 163 TLAAQLYGEFKNFFPNNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAAT 222

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
           R++LER+D I+++SVSCIYGIGSVE+Y+ M  Q++ GD ++Q++LL+ LV QQY+RQDI 
Sbjct: 223 RAVLERDDVIIIASVSCIYGIGSVETYTAMTFQMQKGDKLDQQKLLTDLVSQQYQRQDIN 282

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
            +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  ++++IKIYANS
Sbjct: 283 FVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTADLQSIKIYANS 342

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
           HYVTPRPTLN A+K IK EL  RL EL   GRLLEAQRLEQR  +DLEMLETTGSC  IE
Sbjct: 343 HYVTPRPTLNQAIKSIKMELVKRLDELNAAGRLLEAQRLEQRTIFDLEMLETTGSCSGIE 402

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           NYSRYLTGR PGEPPPTLFEYIP  +L+F+DESHVTIPQI GMYRGDF RKATLAEYGFR
Sbjct: 403 NYSRYLTGRKPGEPPPTLFEYIPSHALVFIDESHVTIPQIGGMYRGDFRRKATLAEYGFR 462

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           LPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ QGI VEQ+IRPTGL+DPP EIR 
Sbjct: 463 LPSCMDNRPLRFEEWDAMRPQTIAVSATPGRWEIEQSQGIFVEQVIRPTGLIDPPTEIRP 522

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
            +TQV+D  +EI+   ++G R L+TVLTKRMAEDLTEYL+E+NIRVRYMHS++ TLERIE
Sbjct: 523 VKTQVDDAINEIHQTIKKGYRTLITVLTKRMAEDLTEYLHEQNIRVRYMHSDINTLERIE 582

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           I+RDLRLG FDVL+GINLLREGLDIPECG VAI DADKEGFLRS+TSLIQ IGRAARNV 
Sbjct: 583 ILRDLRLGTFDVLIGINLLREGLDIPECGFVAIFDADKEGFLRSETSLIQMIGRAARNVE 642

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743
           S+VILYADTIT SI+ A+ ET RRR+KQ+ +NK++ I P S+K+ I +++     E+   
Sbjct: 643 SRVILYADTITGSIERALQETKRRRQKQIAYNKENQITPTSIKKNIDDILSS-AYENNHN 701

Query: 744 TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             IS    Q +        H++ L K M  AA++LNFEEAA+ RDEIKRL+
Sbjct: 702 IKISHFITQNNKVGNNLTNHIQYLEKLMRKAANDLNFEEAAQFRDEIKRLQ 752


>gi|254504061|ref|ZP_05116212.1| excinuclease ABC, B subunit, putative [Labrenzia alexandrii DFL-11]
 gi|222440132|gb|EEE46811.1| excinuclease ABC, B subunit, putative [Labrenzia alexandrii DFL-11]
          Length = 1049

 Score = 1000 bits (2586), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/702 (66%), Positives = 567/702 (80%), Gaps = 2/702 (0%)

Query: 95  SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQP 154
            +Q  T +V+AL+ LI+S NPL KNG++W PHR       S+      + ++Y P GDQP
Sbjct: 224 GKQGATATVEALSALIESGNPLHKNGELWVPHRP-DRPEKSEGGVPINLASEYEPKGDQP 282

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            AIA+L+ GI S E+ Q+LLGVTGSGKT+TMA+VI+  QRPA+++APNK LAAQLY EFK
Sbjct: 283 TAIAELVGGITSGEQTQVLLGVTGSGKTYTMAQVIQRTQRPALILAPNKTLAAQLYGEFK 342

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +FFP NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR+LLER+D I+
Sbjct: 343 SFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRALLERDDVII 402

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           V+SVSCIYGIGSVE+Y+ M   +++G+ ++Q++L++ LV  QYKR D    RGTFRV GD
Sbjct: 403 VASVSCIYGIGSVETYTAMTFAIEVGERIDQRQLIADLVALQYKRNDAAFQRGTFRVRGD 462

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
           +IE+FP+H ED AWR+S+FG++IE+I+EF PLTG+K  +++++KIYANSHYVTP+PTL  
Sbjct: 463 TIELFPAHYEDRAWRISLFGDEIEQITEFDPLTGKKSGDMKSVKIYANSHYVTPKPTLQQ 522

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A K IK ELK RL EL   GRLLEAQRLEQR  +DLEMLE TGSC  IENYSRYLTGR P
Sbjct: 523 ATKSIKAELKGRLEELNAHGRLLEAQRLEQRTIFDLEMLEATGSCAGIENYSRYLTGRKP 582

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
           GEPPPTLFEY+P+++L+F DESHVTIPQI  MYRGDF RKATLAEYGFRLPSCMDNRPLR
Sbjct: 583 GEPPPTLFEYLPDNALVFADESHVTIPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLR 642

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           FEEWN +RP ++ VSATPGSWE+E+  G+  EQ+IRPTGL+DPPVEIR A +QV+D+  E
Sbjct: 643 FEEWNAMRPQSVAVSATPGSWEMEEAGGVFAEQVIRPTGLIDPPVEIRPAGSQVDDLLGE 702

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +   AQ+G R L+T LTKRMAEDLTEYL+E  +RVRYMHS++ TLERIEI+RDLRLG FD
Sbjct: 703 VREVAQKGYRTLVTTLTKRMAEDLTEYLHENGVRVRYMHSDIDTLERIEILRDLRLGAFD 762

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T
Sbjct: 763 VLVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMT 822

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
            S++ AI ET RRR+KQL +N +H I P+SVK  I +++  +  +D  T +    A++ S
Sbjct: 823 GSMERAIAETNRRRDKQLAYNTEHGITPESVKRSIGDIMQSVYEQDHVTVDAGF-AEEGS 881

Query: 755 LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           L      AH+  L KQM  AA +L+FE AAR+RDE+KRL+ +
Sbjct: 882 LVGHNLAAHISDLEKQMRDAAADLDFETAARLRDEVKRLQET 923


>gi|13472362|ref|NP_103929.1| excinuclease ABC subunit B [Mesorhizobium loti MAFF303099]
 gi|81855589|sp|Q98I01|UVRB_RHILO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|14023108|dbj|BAB49715.1| excinuclease ABC subunit B [Mesorhizobium loti MAFF303099]
          Length = 870

 Score = 1000 bits (2585), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/653 (70%), Positives = 553/653 (84%), Gaps = 1/653 (0%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M +D+ P+GDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMAKVIE  QRPA+++APN
Sbjct: 1   MVSDFEPAGDQPTAIKDLVEGVDNNDRTQVLLGVTGSGKTFTMAKVIEETQRPALILAPN 60

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+IEKESSINEQIDRMRHSA
Sbjct: 61  KTLAAQLYSEFKKFFPDNAVEYFVSYYDYYQPEAYVPRTDTFIEKESSINEQIDRMRHSA 120

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TRSLLER+D I+V+SVSCIYGIGSVE+Y+ M  Q++IGD ++Q+ LL+ LV QQYKRQDI
Sbjct: 121 TRSLLERDDVIIVASVSCIYGIGSVETYTAMTFQMQIGDRLDQRALLADLVAQQYKRQDI 180

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED AWR+SMFG++IE+I+EF PLTGQK   ++++KIYAN
Sbjct: 181 NFVRGSFRVRGDTIEIFPAHLEDRAWRISMFGDEIEQITEFDPLTGQKTGELKSVKIYAN 240

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL+ELE+ GRLLEAQRLEQR  +DLEMLE TGSC  I
Sbjct: 241 SHYVTPRPTLNQAIKSIKEELKQRLVELERAGRLLEAQRLEQRTRFDLEMLEATGSCAGI 300

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PG+PPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 301 ENYSRYLTGRQPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 360

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP ++ VSATPG WE+EQ  G+  EQ+IRPTGL+DPPVE+R
Sbjct: 361 RLPSCMDNRPLRFEEWDAMRPLSVAVSATPGGWEMEQSGGVFAEQVIRPTGLIDPPVEVR 420

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A++QV+DV  EI    + G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 421 PAKSQVDDVVGEIRETTKAGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 480

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI+RDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 481 EILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 540

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S++ A+ ET RRREKQ+E N  + I P+SVK +I +++D +  +D  
Sbjct: 541 DGKVILYADQVTGSMERAMAETNRRREKQMEWNAANGITPESVKSRISDILDSVYEKDHV 600

Query: 743 TTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             +IS       ++     KAHL ++ KQM  AA NL+FE+AARIRDEIKRL+
Sbjct: 601 RADISQFTDSAGAMMGNNLKAHLDAMEKQMRDAAANLDFEKAARIRDEIKRLR 653


>gi|304393621|ref|ZP_07375549.1| excinuclease ABC subunit B [Ahrensia sp. R2A130]
 gi|303294628|gb|EFL89000.1| excinuclease ABC subunit B [Ahrensia sp. R2A130]
          Length = 938

 Score =  992 bits (2564), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/722 (65%), Positives = 578/722 (80%), Gaps = 11/722 (1%)

Query: 82  SSISMSEKQTREI-SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITF 140
           + + +S ++  E+ S   +T +VQAL+ LI+     +K G IW PHR     +   D   
Sbjct: 125 AGLDVSAEEALEMASTSGVTATVQALSELIEHGRDEMK-GDIWVPHRP-DRPDKDPDQKP 182

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSR-------EKVQLLLGVTGSGKTFTMAKVIEAMQ 193
           F + +++ P GDQP AI +L+ G+ S        E+ Q+LLGVTGSGKTFTMAKVIE  Q
Sbjct: 183 FTVVSEFEPKGDQPTAIKELVGGLKSEAGSNQGGERTQVLLGVTGSGKTFTMAKVIEETQ 242

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPA+++APNK LAAQLY E K+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESS+NE
Sbjct: 243 RPALILAPNKTLAAQLYGEMKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSVNE 302

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           QIDRMRHSATRSLLER+D I+V+SVSCIYGIGSVE+Y+ M  Q+KIGD++ Q++LL+ LV
Sbjct: 303 QIDRMRHSATRSLLERDDTIIVASVSCIYGIGSVETYTAMTFQMKIGDTLNQRQLLADLV 362

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
            QQYKR+D    RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  N
Sbjct: 363 AQQYKRRDADFQRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTDN 422

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           ++++KIYANSHYVTPRPTLN A+K IK EL  RL EL + GR LEAQRLEQR+ +D+EM+
Sbjct: 423 LKSVKIYANSHYVTPRPTLNQAVKEIKLELTWRLEELTRAGRFLEAQRLEQRVKFDIEMI 482

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           E TGSC SIENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHVTIPQI GMYRGDF R
Sbjct: 483 EATGSCASIENYSRYLTGRKPGEPPPTLFEYLPDNALVFADESHVTIPQIGGMYRGDFRR 542

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           KATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ  G+  EQ+IRPTG
Sbjct: 543 KATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTICVSATPGGWEMEQAGGVFAEQVIRPTG 602

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DPPVEIR+A+TQV+DV DEI   + QG R L+TVLTKRMAEDLTEY++E+ I+VRYMH
Sbjct: 603 LIDPPVEIRTAKTQVDDVVDEIKQVSAQGYRTLVTVLTKRMAEDLTEYMHEQGIKVRYMH 662

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ TLERIEIIRDLRLG FDVL+GINLLREGLDIPECGLV ILDADKEGFLRS+TSL+Q
Sbjct: 663 SDIDTLERIEIIRDLRLGAFDVLIGINLLREGLDIPECGLVTILDADKEGFLRSETSLVQ 722

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAARNV+ +VILYAD IT S++ A+ ET RRREKQ  +N+KH I P S+K  I +++
Sbjct: 723 TIGRAARNVDGRVILYADRITGSMERAMAETDRRREKQEAYNEKHGITPASIKRDISDIL 782

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             +   D    +  + A++ +L     KAHL ++ K M  AA +L+FE+AA +RDEIKRL
Sbjct: 783 GSVYEGDHVRVDAGL-AKEGALVGNNMKAHLAAMEKDMRDAAADLDFEKAANLRDEIKRL 841

Query: 794 KS 795
           ++
Sbjct: 842 QA 843


>gi|319898509|ref|YP_004158602.1| excinuclease ABC, subunit B [Bartonella clarridgeiae 73]
 gi|319402473|emb|CBI76016.1| excinuclease ABC, subunit B [Bartonella clarridgeiae 73]
          Length = 810

 Score =  989 bits (2557), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/696 (67%), Positives = 566/696 (81%), Gaps = 2/696 (0%)

Query: 99  MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158
           +T +V+AL+ LI S NPL KNG +WTPHR          I F Q++T + P+GDQP AI 
Sbjct: 62  VTATVEALSALIASGNPLFKNGALWTPHRPIRPEKSEGGIPF-QIKTSFQPAGDQPNAIK 120

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            L++GI   E+ Q+LLGVTGSGKT+TMAK+IE  QRPA+++APNK LAAQLY EFKNFFP
Sbjct: 121 SLVEGIEKNERTQVLLGVTGSGKTYTMAKIIEKTQRPALILAPNKTLAAQLYGEFKNFFP 180

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
           +NAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR++LER+D I+++SV
Sbjct: 181 NNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATRAVLERDDVIIIASV 240

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           SCIYGIGSVE+Y+ M +Q++ GD + +++LL+ LV QQY+RQ+I  +RG+FRV GD+IEI
Sbjct: 241 SCIYGIGSVETYTAMTLQMQKGDKLNKQKLLTDLVAQQYQRQNINFVRGSFRVRGDTIEI 300

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP+HLE+ AWR+S+F ++IE ++EF PLTGQK  ++++IKIYANSHYVTPRPTLN A+K 
Sbjct: 301 FPAHLENRAWRISLFDDEIETLTEFDPLTGQKTGDLQSIKIYANSHYVTPRPTLNQAIKS 360

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           IK EL  RL EL   GRLLEAQRLEQR  +DLEMLETTGSC  IENYSRYLTGR PGEPP
Sbjct: 361 IKMELVQRLDELNAAGRLLEAQRLEQRTIFDLEMLETTGSCPGIENYSRYLTGRKPGEPP 420

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           PT+FEYIP  +L+F+DESHVTIPQI GMYRGDF RKATL EYGFRLPSCMDNRPL FEEW
Sbjct: 421 PTMFEYIPNHALVFIDESHVTIPQIGGMYRGDFRRKATLVEYGFRLPSCMDNRPLSFEEW 480

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           + +R  TI VSATPG WE+EQ + I VEQIIRPTGL+DPP EIR A+TQV+DV +EI   
Sbjct: 481 DAMRSQTIAVSATPGRWEIEQSRNIFVEQIIRPTGLIDPPTEIRPAKTQVDDVVNEIRQT 540

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++G R L+TVLTK MAEDLTEYL+E+NIRVRYMHS++ TLERIEI+RDLRLG FDVLVG
Sbjct: 541 IKKGYRTLITVLTKHMAEDLTEYLHEQNIRVRYMHSDINTLERIEILRDLRLGTFDVLVG 600

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           INLLREGLDIPECG VAI DADKEGFLRS+TSLIQTIGRAARNV+S+VILYAD IT SI+
Sbjct: 601 INLLREGLDIPECGFVAIFDADKEGFLRSETSLIQTIGRAARNVDSRVILYADIITGSIE 660

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
            A+ ET RRR+KQ+ +N++H I P S+K+ I + +  +  E+    NIS    Q +    
Sbjct: 661 RALQETKRRRQKQIAYNEEHQITPTSIKKNIDDTLSSV-YENDYNINISHFITQNNRVGD 719

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               H++ L K M  AAD+LNFEEAAR+RDEIK L+
Sbjct: 720 NLSNHIQHLEKLMRKAADDLNFEEAARLRDEIKLLQ 755


>gi|154246683|ref|YP_001417641.1| excinuclease ABC subunit B [Xanthobacter autotrophicus Py2]
 gi|154160768|gb|ABS67984.1| excinuclease ABC, B subunit [Xanthobacter autotrophicus Py2]
          Length = 866

 Score =  972 bits (2513), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/695 (65%), Positives = 563/695 (81%), Gaps = 3/695 (0%)

Query: 102 SVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLL 161
           +VQAL++LI++  P + NG+ W PHR          ++F  M++D+ P+GDQP AIA+L 
Sbjct: 53  TVQALSQLIENGRPEV-NGQTWVPHRPPRPEKSEGGVSFI-MKSDFEPAGDQPQAIAELC 110

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
               + E+ Q+LLGVTGSGKTFTMAKVIE +QRPAIV+APNK LAAQLY EFK+FFP NA
Sbjct: 111 AQAQAGERDQVLLGVTGSGKTFTMAKVIEQLQRPAIVLAPNKTLAAQLYGEFKSFFPDNA 170

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
           VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH+ATR+LLER+D I+V+SVSCI
Sbjct: 171 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCI 230

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
           YGIGSVE+YS M   +K+G+ ++Q+ LL+ LV  QYKR      RGTFRV GD +EIFP+
Sbjct: 231 YGIGSVETYSAMTFDIKVGERIDQRGLLADLVALQYKRIQSDFARGTFRVRGDVVEIFPA 290

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
           H ED AWRVS+FG+++E I+EF PLTG K  +++++++YA SHYVTPRPTL  A+  IK 
Sbjct: 291 HYEDRAWRVSLFGDEVESIAEFDPLTGHKSGDMKSVRVYAASHYVTPRPTLIQAITGIKA 350

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           ELKMRL EL K GRLLEAQRLEQR  YDLEM+E TGSC  IENYSR+LTGR PGEPPPTL
Sbjct: 351 ELKMRLDELYKMGRLLEAQRLEQRTRYDLEMMEATGSCAGIENYSRWLTGRKPGEPPPTL 410

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
           FEY+P++SL+F+DESHVT+PQI  MYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW  +
Sbjct: 411 FEYVPDNSLVFIDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWEAM 470

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           RP T+ VSATPG+WE+E+  G+ VEQ+IRPTGL+DPPVE+R ARTQV+D+  E+   A +
Sbjct: 471 RPQTVHVSATPGTWEMEKTGGVFVEQVIRPTGLIDPPVEVRPARTQVDDLLGEVRAFAAK 530

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G R L+TVLTKRMAEDLTEYL+E  IRVRYMHS++ T+ERIEIIRDLRLG FDVL+GINL
Sbjct: 531 GYRTLVTVLTKRMAEDLTEYLHEHGIRVRYMHSDIDTIERIEIIRDLRLGAFDVLIGINL 590

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           LREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAARNV+ +VILYAD +T S++ A+
Sbjct: 591 LREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADRVTGSMERAM 650

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761
            ET+RRREKQ+ +N  H I P+SVK+ I ++++ +   D    +  + A++ +      K
Sbjct: 651 AETSRRREKQVAYNTAHGITPESVKKAIGDILNSVYERDHVQVDAGL-AEEGAAFGHNLK 709

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           A +  L K+M  AA +L+FE AAR+RDEI+RL+++
Sbjct: 710 AVMADLEKRMRAAAADLDFETAARLRDEIRRLEAT 744


>gi|323138209|ref|ZP_08073281.1| excinuclease ABC, B subunit [Methylocystis sp. ATCC 49242]
 gi|322396461|gb|EFX98990.1| excinuclease ABC, B subunit [Methylocystis sp. ATCC 49242]
          Length = 852

 Score =  968 bits (2503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/696 (65%), Positives = 563/696 (80%), Gaps = 7/696 (1%)

Query: 102 SVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLL 161
           +  +LA L++  +P L++ K W PHR          + F ++ +DY P GDQPAAIA+L+
Sbjct: 85  TADSLADLLRLGDPNLRDKKPWVPHRPERPEKSEGGVKF-ELVSDYTPKGDQPAAIAELV 143

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
           KGI ++E+ Q+LLGVTGSGKTFTMA VI A QRPA+++APNK LAAQLY EFK+FFP+NA
Sbjct: 144 KGIEAQERDQVLLGVTGSGKTFTMASVIAATQRPALILAPNKTLAAQLYGEFKSFFPNNA 203

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
           VEYFVSYYDYYQPEAYVPR+DTYIEKESS+NEQIDRMRH+ATR+LLER+D I+V+SVSCI
Sbjct: 204 VEYFVSYYDYYQPEAYVPRSDTYIEKESSVNEQIDRMRHAATRALLERDDVIIVASVSCI 263

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
           YGIGSVE+Y+ M   +++G+ +EQ++L++ LV   Y+R      RGTFRV GD++++FP+
Sbjct: 264 YGIGSVETYTAMTFSVQLGEKLEQRQLVTDLVALHYRRVQADFTRGTFRVRGDTVDVFPA 323

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
           H ED AWRVS FG+++E I EF PLTG+K  ++E +KIYANSHYVTPRPTL  ++K IK+
Sbjct: 324 HYEDRAWRVSFFGDEVESICEFDPLTGKKTVDLEFVKIYANSHYVTPRPTLLQSIKAIKD 383

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           EL+ RL EL + GRLLEAQRLEQR  +DLEM+E TG+C  IENYSRYLTGR PGEPPPTL
Sbjct: 384 ELRARLDELNRSGRLLEAQRLEQRTRFDLEMMEATGACAGIENYSRYLTGRKPGEPPPTL 443

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
           FEY+P+++L+F DESHV+IPQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +
Sbjct: 444 FEYLPDNALVFADESHVSIPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAM 503

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           RP T+ VSATPG+WELEQ  G+ VEQ+IRPTGL+DPPVE+RSARTQV+D+ DE+   +Q 
Sbjct: 504 RPQTVSVSATPGNWELEQTGGVFVEQVIRPTGLIDPPVEVRSARTQVDDLLDEVRATSQI 563

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G R L+TVLTKRMAEDLTEYL+E  +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINL
Sbjct: 564 GYRTLVTVLTKRMAEDLTEYLHENGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINL 623

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           LREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAARNV+ +VILYAD IT S++ A+
Sbjct: 624 LREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADHITGSMKRAM 683

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID-AQQLSLSKKKG 760
           DET RRR KQ  +N ++NI P S+K  I +++  +  +D  T +   D A   +L+    
Sbjct: 684 DETERRRAKQQAYNIENNITPASIKRGIADILGSVAEQDHVTVDTGFDIAPGHNLA---- 739

Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A +  L K+M   A +L FEEAAR+RDEI+RL+ +
Sbjct: 740 -ATIADLEKRMKEVAADLAFEEAARLRDEIQRLQKA 774


>gi|158424751|ref|YP_001526043.1| excinuclease ABC subunit B [Azorhizobium caulinodans ORS 571]
 gi|158331640|dbj|BAF89125.1| excinuclease ABC B subunit [Azorhizobium caulinodans ORS 571]
          Length = 876

 Score =  967 bits (2501), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/695 (65%), Positives = 562/695 (80%), Gaps = 3/695 (0%)

Query: 102 SVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLL 161
           +VQAL++LI++  P + NG+ W PHR          I F  M++D+ PSGDQP AI +L 
Sbjct: 53  TVQALSQLIENGRPEV-NGQTWVPHRPPRPEKSEGGIRFV-MKSDFQPSGDQPQAIKELT 110

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
           +     E+ Q+LLGVTGSGKTFTMAKVIE +QRPAIV+APNK LAAQLY EFK+FFP NA
Sbjct: 111 EAARQGERDQVLLGVTGSGKTFTMAKVIETLQRPAIVLAPNKTLAAQLYGEFKSFFPDNA 170

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
           VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH+ATRSLLER+D I+V+SVSCI
Sbjct: 171 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHAATRSLLERDDVIIVASVSCI 230

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
           YGIGSVE+Y+ M  +L++G+ ++Q++LL+ LV  QYKR      RGTFRV GD +EIFP+
Sbjct: 231 YGIGSVETYASMTFKLEVGERIDQRQLLADLVALQYKRIQSDFARGTFRVRGDVVEIFPA 290

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
           H ED AWR+S+FG+++E I EF PLTG K  +++++K+YA+SHYVTPRPTL  A+  IK 
Sbjct: 291 HYEDRAWRISLFGDEVESIVEFDPLTGHKTGDMKSVKVYASSHYVTPRPTLIQAITGIKA 350

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           ELK RL EL K GRLLEAQRLEQR  YD+EM+E TGSC  IENYSR+LTGR PGEPPPTL
Sbjct: 351 ELKHRLDELYKMGRLLEAQRLEQRTRYDIEMMEATGSCAGIENYSRWLTGRKPGEPPPTL 410

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
           FEY+P+D+++F+DESHVT+PQI  MYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +
Sbjct: 411 FEYVPDDAMVFIDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAM 470

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           RP T+ VSATPG WE+++  G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+  E+   A +
Sbjct: 471 RPQTVHVSATPGPWEMDRTGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLLGEVRATAAK 530

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G R L+TVLTKRMAEDLTEYL+E  IRVRYMHS++ T+ERIEIIRDLRLG FDVL+GINL
Sbjct: 531 GYRSLVTVLTKRMAEDLTEYLHENGIRVRYMHSDIDTIERIEIIRDLRLGAFDVLIGINL 590

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           LREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD  T S++ A+
Sbjct: 591 LREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADHETGSMKRAM 650

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761
            ET RRREKQ+ +N +H I P+SVK+ I ++++ +   D    +  + A++ +      K
Sbjct: 651 AETARRREKQIAYNTEHGITPESVKKAIGDILNSVYERDHVAVDSGL-AEEGAAFGHNLK 709

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           A +  L K+M  AA +L+FEEAAR+RDEIKRL+++
Sbjct: 710 AIMADLEKRMRAAAADLDFEEAARLRDEIKRLQAT 744


>gi|46203067|ref|ZP_00052141.2| COG0556: Helicase subunit of the DNA excision repair complex
           [Magnetospirillum magnetotacticum MS-1]
          Length = 881

 Score =  967 bits (2500), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/703 (63%), Positives = 565/703 (80%), Gaps = 2/703 (0%)

Query: 94  ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQ 153
           ++ + ++ +V+AL +L+   NPL KNG+ W PHR          + F  +++D+ P+GDQ
Sbjct: 102 LATEGVSATVEALEKLLTEGNPLFKNGEAWVPHRPERPAKSEGGVKF-TLKSDFTPAGDQ 160

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
           P AIA L++G+ + E+ Q+LLGVTGSGKTFTMAKVIE  QRPA+++APNK LAAQLY EF
Sbjct: 161 PTAIAALVEGVKTAERDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKTLAAQLYGEF 220

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           K+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRH+ATR+LLER+D I
Sbjct: 221 KSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHAATRALLERDDVI 280

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           +V+SVSCIYGIGSVE+Y+ M   + +G+ +EQ++L++ LV  QYKR      RGTFRV G
Sbjct: 281 IVASVSCIYGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQSDFARGTFRVRG 340

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D IE++P+HLED  WR+ +FG+++E I EF PLTG+KI  ++ +K+YANSHYVTPRPTL 
Sbjct: 341 DVIELWPAHLEDRGWRIGLFGDEVESIVEFDPLTGKKINELKFVKVYANSHYVTPRPTLQ 400

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A+K IK ELK+R+ EL + GRL+EAQRLEQR T+D+EM+E TG+C  IENYSRYLTGR 
Sbjct: 401 QAIKGIKTELKLRVDELTRMGRLIEAQRLEQRCTFDIEMIEATGACNGIENYSRYLTGRK 460

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
           PGEPPPTLFEY+P+++L+F DESHVT+PQI GMYRGDF RKATLAEYGFRLPSC+DNRPL
Sbjct: 461 PGEPPPTLFEYLPDNALVFTDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCLDNRPL 520

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
           RFEEW+ +RP ++ VSATPG WE+E+  G+  EQ+IRPTGLVDP +EIR AR+QV+D+  
Sbjct: 521 RFEEWDAMRPQSVHVSATPGKWEMERTAGVFAEQVIRPTGLVDPVIEIRPARSQVDDLLG 580

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E+   AQ G R L+T LTKRMAEDLTEYL+E ++RVRYMHS++ TLERIEIIRDLRLG F
Sbjct: 581 EVRAVAQAGYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLERIEIIRDLRLGAF 640

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           DVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN  ++ ILYADTI
Sbjct: 641 DVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNAEARCILYADTI 700

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           T S++ A+ ET RRR+KQL +N++H I PQSVK  I ++++ +   D    +  +    +
Sbjct: 701 TGSMERAMAETERRRQKQLAYNEEHGITPQSVKRGISDILESVYERDHVRVDTGLAKDAI 760

Query: 754 SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           ++     KA +  L K+M  AA +L+FEEAAR+RDE+KRL+++
Sbjct: 761 TVGHNL-KAVMADLEKRMRAAAADLDFEEAARLRDELKRLQAT 802


>gi|188583725|ref|YP_001927170.1| excinuclease ABC subunit B [Methylobacterium populi BJ001]
 gi|179347223|gb|ACB82635.1| excinuclease ABC, B subunit [Methylobacterium populi BJ001]
          Length = 922

 Score =  966 bits (2496), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/703 (63%), Positives = 563/703 (80%), Gaps = 2/703 (0%)

Query: 94  ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQ 153
           ++ + ++ +V+AL +L+   NPL KNG+ W PHR          + F  +++D+ P+GDQ
Sbjct: 142 LATEGVSATVEALEKLLTEGNPLFKNGEAWVPHRPERPAKSEGGVKF-TLKSDFTPAGDQ 200

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
           P AIA L++G+ S E+ Q+LLGVTGSGKTFTMAKVIE  QRPA+++APNK LAAQLY EF
Sbjct: 201 PTAIAALVEGVKSAERDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKTLAAQLYGEF 260

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           K+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRHSATR+LLER+D I
Sbjct: 261 KSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATRALLERDDVI 320

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           +V+SVSCIYGIGSVE+Y+ M   + +G+ +EQ++L++ LV  QYKR      RGTFRV G
Sbjct: 321 IVASVSCIYGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQSDFARGTFRVRG 380

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D IE++P+HLED  WR+ +FG+++E I EF PLTG+K+  ++ +K+YANSHYVTPRPTL 
Sbjct: 381 DVIELWPAHLEDRGWRIGLFGDEVESIVEFDPLTGKKLNELKFVKVYANSHYVTPRPTLQ 440

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A+K IK ELK R+ EL + GRL+EAQRLEQR T+D+EM+E TG+C  IENYSRYLTGR 
Sbjct: 441 QAIKGIKTELKQRVEELTRMGRLIEAQRLEQRCTFDIEMIEATGACNGIENYSRYLTGRK 500

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
           PGEPPPTLFEY+P+++L+F DESHVT+PQI GMYRGDF RKATLAEYGFRLPSC+DNRPL
Sbjct: 501 PGEPPPTLFEYLPDNALVFTDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCLDNRPL 560

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
           RFEEW+ +RP ++ VSATP  WE+E+  G+  EQ+IRPTGLVDP +EIR AR+QV+D+  
Sbjct: 561 RFEEWDAMRPQSVHVSATPAKWEMERTAGVFAEQVIRPTGLVDPVIEIRPARSQVDDLLG 620

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E+   AQ G R L+T LTKRMAEDLTEYL+E ++RVRYMHS++ TLERIEIIRDLRLG F
Sbjct: 621 EVRAVAQAGYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLERIEIIRDLRLGAF 680

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           DVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN +++ ILYADTI
Sbjct: 681 DVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNADARCILYADTI 740

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           T S++ A+ ET RRR+KQL +N +H I PQSVK  I ++++ +   D    +  +    +
Sbjct: 741 TGSMERAMAETERRRQKQLAYNAEHGITPQSVKRGIADILESVYERDHVRVDTGLAKDAI 800

Query: 754 SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           ++     KA +  L K+M  AA +L+FEEAAR+RDE+KRL+++
Sbjct: 801 TVGHNL-KAVMADLEKRMRAAAADLDFEEAARLRDELKRLQAT 842


>gi|115526185|ref|YP_783096.1| excinuclease ABC subunit B [Rhodopseudomonas palustris BisA53]
 gi|115520132|gb|ABJ08116.1| Excinuclease ABC subunit B [Rhodopseudomonas palustris BisA53]
          Length = 1023

 Score =  965 bits (2495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/682 (66%), Positives = 545/682 (79%), Gaps = 7/682 (1%)

Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180
           K+WTPHR          + F  ++++Y P GDQP AI +L++GI+  ++ Q+LLGVTGSG
Sbjct: 191 KLWTPHRPPRPEKTEGGVRFV-IKSEYEPKGDQPTAIKELVEGINRNDRTQVLLGVTGSG 249

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           KT+TMAKVIEA QRPAI++APNK LAAQLY EFKNFFP NAVEYFVSYYDYYQPEAYVPR
Sbjct: 250 KTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPR 309

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           TDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M   LK G
Sbjct: 310 TDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYTAMTFALKKG 369

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           + ++Q++L++ LV  QYKR      RGTFRV GD I+IFP+H ED AWRV++FG+ +E I
Sbjct: 370 ERIDQRQLIADLVALQYKRTQADFSRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDTVETI 429

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
            EF PLTG K   +E IKIYANSHYVTPRPTL  AM+ IK ELKMRL EL  +GRLLEAQ
Sbjct: 430 EEFDPLTGHKQDELEFIKIYANSHYVTPRPTLIQAMQSIKSELKMRLDELHAQGRLLEAQ 489

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
           RLEQR T+D+EM+E TGSC  IENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHVT+
Sbjct: 490 RLEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEPPPTLFEYVPDNALVFADESHVTV 549

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           PQI GM++GDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP ++ VSATP +WEL + 
Sbjct: 550 PQIGGMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDMMRPQSVAVSATPSAWELNES 609

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
            G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+  E+   AQ+G R L+TVLTKRMAEDLTE
Sbjct: 610 GGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRATAQKGFRSLVTVLTKRMAEDLTE 669

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           YL+E+ +RVRYMHS++ T+ERIEIIRDLRLG FD LVGINLLREGLDIPEC LVAILDAD
Sbjct: 670 YLHEQGVRVRYMHSDIDTIERIEIIRDLRLGAFDALVGINLLREGLDIPECALVAILDAD 729

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
           KEGFLRS+TSLIQTIGRAARNV  KVILYAD +T S+Q AIDET RRREKQ+E+N  H I
Sbjct: 730 KEGFLRSETSLIQTIGRAARNVEGKVILYADRMTGSMQRAIDETNRRREKQVEYNTAHGI 789

Query: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK-GKAH-----LKSLRKQMHLA 774
            P+S+K+ I ++++ +   D     I       S S       H     L  L  +M  A
Sbjct: 790 TPESIKKSIGDILNSVYERDHVLVEIGGHGGAASWSDDAIAIGHNFETVLADLETRMREA 849

Query: 775 ADNLNFEEAARIRDEIKRLKSS 796
           A +LNFEEAAR+RDE+KRL+++
Sbjct: 850 AADLNFEEAARLRDEVKRLRAT 871


>gi|170747239|ref|YP_001753499.1| excinuclease ABC subunit B [Methylobacterium radiotolerans JCM
           2831]
 gi|170653761|gb|ACB22816.1| excinuclease ABC, B subunit [Methylobacterium radiotolerans JCM
           2831]
          Length = 923

 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/695 (63%), Positives = 557/695 (80%), Gaps = 2/695 (0%)

Query: 102 SVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLL 161
           +V AL RL+   NPL K+GK WTPHR          + F  +++D+ P+GDQP AIA+L+
Sbjct: 143 TVTALERLLTEGNPLFKDGKTWTPHRPERPQKSEGGVRF-TLKSDFTPAGDQPRAIAELV 201

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
            G+ + E+ Q+LLGVTGSGKTFTMAK+IE  QRPA+++APNK LAAQLY EFK FFP NA
Sbjct: 202 GGVQALERDQVLLGVTGSGKTFTMAKIIEETQRPALILAPNKTLAAQLYGEFKAFFPDNA 261

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
           VEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRH+ATR+LLER+D I+V+SVSCI
Sbjct: 262 VEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCI 321

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
           YGIGSVE+Y+ M   + +G+ +EQ++L++ LV  QYKR      RGTFRV GDSIE++P+
Sbjct: 322 YGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQSDFARGTFRVRGDSIELWPA 381

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
           HLED  WR+ +FG+++E I EF PLTG+ I  ++ +K+YANSHYVTPRPTL  A+K IK 
Sbjct: 382 HLEDRGWRIGLFGDEVESIVEFDPLTGKTISELKFVKVYANSHYVTPRPTLQQAIKGIKH 441

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           ELK R+ EL K GRL+EAQR++QR T+D+EM+E TG+C  IENYSRYLTGR PGEPPPTL
Sbjct: 442 ELKGRIEELTKMGRLIEAQRIDQRCTFDIEMIEATGACNGIENYSRYLTGRKPGEPPPTL 501

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
           FEY+P+++L+F DESHVT+PQI GMYRGDF RKATLAEYGFRLPSC+DNRPLRFEEW+ +
Sbjct: 502 FEYLPDNALVFTDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCLDNRPLRFEEWDAM 561

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           RP T+ VSATPG WE+EQ  G+  EQ+IRPTGLVDP +E+R AR+QV+D+  E+   AQ 
Sbjct: 562 RPQTVHVSATPGKWEMEQTGGVFAEQVIRPTGLVDPVIEVRPARSQVDDLLGEVREVAQA 621

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G R L+T LTKRMAEDLTEYL+E ++RVRYMHS++ TLERIEIIRDLRLG FDVL+GINL
Sbjct: 622 GYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLERIEIIRDLRLGAFDVLIGINL 681

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           LREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN +++ ILYAD+IT S++ A+
Sbjct: 682 LREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNADARCILYADSITGSMERAM 741

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761
            ET RRR KQL +N++H I PQSVK  I +++  +   D    +  +    +++     K
Sbjct: 742 AETERRRAKQLAYNEEHGITPQSVKRGIADILSSVFERDHVQVDTGLAKDAITVGHNL-K 800

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           A +  L K+M  AA +L+FEEAAR+RDE+KRL+++
Sbjct: 801 AVMADLEKRMRAAAADLDFEEAARLRDELKRLQAT 835


>gi|148253310|ref|YP_001237895.1| excinuclease ABC subunit B [Bradyrhizobium sp. BTAi1]
 gi|146405483|gb|ABQ33989.1| Excinuclease ABC subunit B [Bradyrhizobium sp. BTAi1]
          Length = 1058

 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/709 (64%), Positives = 560/709 (78%), Gaps = 23/709 (3%)

Query: 102 SVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157
           + +AL  LI+   P  +      K+WTPHR    +     + F ++++ Y P GDQP AI
Sbjct: 188 TAEALEALIREGRPEFRRDDGSLKLWTPHRPPRPDKSEGGVRF-EIKSAYEPKGDQPQAI 246

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
           A+L++GI+  ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI++APNK LAAQLY EFK+FF
Sbjct: 247 AELVEGINRNDRTQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKSFF 306

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
           P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+S
Sbjct: 307 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVAS 366

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           VSCIYGIGSVE+Y+ M   LK G+ ++Q++L++ LV  QYKR      RGTFRV GD ++
Sbjct: 367 VSCIYGIGSVETYTAMTFALKKGERIDQRQLIADLVALQYKRTQHDFTRGTFRVRGDVVD 426

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP+H ED AWRV++FG+ +E I EF PLTG K   +E IK+YANSHYVTPRPTL  A+K
Sbjct: 427 IFPAHYEDRAWRVNLFGDTVENIEEFDPLTGHKQDELEFIKVYANSHYVTPRPTLVQAIK 486

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            IK ELK+RL +L  +GRLLEAQRLEQR T+D+EM+E TGSC  IENYSRYLTGR PGEP
Sbjct: 487 SIKHELKIRLDQLHAQGRLLEAQRLEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEP 546

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           PPTLFEY+P+++L+F DESHVTIPQI GM+RGDF RKATLAEYGFRLPSCMDNRPLRFEE
Sbjct: 547 PPTLFEYVPDNALVFADESHVTIPQIGGMFRGDFRRKATLAEYGFRLPSCMDNRPLRFEE 606

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           W+ +RP T+ VSATPG WEL +  G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+  E+  
Sbjct: 607 WDMMRPQTVAVSATPGGWELNEAGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLLGEVRA 666

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            AQ+G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV
Sbjct: 667 TAQKGYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 726

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+
Sbjct: 727 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQMTGSM 786

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------DPILLEDAATTN----IS 747
           + AI ET RRREKQ+E+N  H I P+SVK+ I +++      D +L+E    T     IS
Sbjct: 787 ERAIAETNRRREKQVEYNTAHGITPESVKKSIGDILNSVYERDHVLVETGGGTTTDDVIS 846

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           I     ++        L  L  +M  AA +LNFEEAAR+RDE+KRL+++
Sbjct: 847 IGHNFETV--------LADLETRMREAAADLNFEEAARLRDEVKRLRAT 887


>gi|75676679|ref|YP_319100.1| excinuclease ABC subunit B [Nitrobacter winogradskyi Nb-255]
 gi|74421549|gb|ABA05748.1| Excinuclease ABC subunit B [Nitrobacter winogradskyi Nb-255]
          Length = 1032

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/705 (64%), Positives = 558/705 (79%), Gaps = 11/705 (1%)

Query: 102 SVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157
           + ++L  L++   P  K G    K+WTPHR       S+    F+++++Y P GDQP AI
Sbjct: 192 TAESLEALLRDGRPEFKTGDGSLKLWTPHRP-PRPEKSEGGVRFEIKSEYQPKGDQPQAI 250

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +L++GI   ++ Q+LLGVTGSGKT+TMAKVIEA QRPA+++APNK LAAQLY EFK+FF
Sbjct: 251 RELVEGIRRNDRTQVLLGVTGSGKTYTMAKVIEATQRPALILAPNKTLAAQLYGEFKSFF 310

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
           P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+S
Sbjct: 311 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVAS 370

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           VSCIYGIGSVE+Y+ M   LK G+ ++Q++L++ LV  QYKR      RGTFRV GD+I+
Sbjct: 371 VSCIYGIGSVETYTAMTFALKRGERIDQRQLIADLVALQYKRTSADFTRGTFRVRGDTID 430

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP+H ED AWRV++FG+++E I EF PLTG K   ++ IK+Y+NSHYVTPRPTL  A+K
Sbjct: 431 IFPAHYEDRAWRVNLFGDEVESIEEFDPLTGHKQDELDFIKVYSNSHYVTPRPTLVQAIK 490

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            IK ELK RL EL  +GRLLEAQRLEQR T+DLEM+E TGSC  IENYSRYLTGR PGEP
Sbjct: 491 NIKVELKQRLDELHAQGRLLEAQRLEQRTTFDLEMMEATGSCAGIENYSRYLTGRRPGEP 550

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           PPTLFEY+P+++L+F DESHV++PQI GM+RGDF RKATLAEYGFRLPSCMDNRPLRFEE
Sbjct: 551 PPTLFEYVPDNALVFADESHVSVPQIGGMFRGDFRRKATLAEYGFRLPSCMDNRPLRFEE 610

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           W+ +RP TI VSATPG+WEL +  G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+  E+  
Sbjct: 611 WDMMRPQTIAVSATPGAWELNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRA 670

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            A +G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV
Sbjct: 671 TAAKGYRSLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 730

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV  +VILYAD +T S+
Sbjct: 731 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVEGRVILYADQVTGSM 790

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
           Q +I ET RRREKQ+E+N  H I P+S+K+ I ++++ +   D     I    +  S S 
Sbjct: 791 QRSIAETDRRREKQVEYNTAHGITPESIKKSIGDILNSVYERDHVLVEIGDGGKGNSWSD 850

Query: 758 K------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                    +A L  L  +M  AA +LNFEEAAR+RDE+KRL+++
Sbjct: 851 DAIAIGHNFEAVLSDLETRMREAAADLNFEEAARLRDEVKRLRAT 895


>gi|146342818|ref|YP_001207866.1| excinuclease ABC subunit B [Bradyrhizobium sp. ORS278]
 gi|146195624|emb|CAL79651.1| putative UvrABC system, protein B (UvrB, Excinuclease ABC subunit
           B) [Bradyrhizobium sp. ORS278]
          Length = 1052

 Score =  964 bits (2492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/705 (64%), Positives = 557/705 (79%), Gaps = 15/705 (2%)

Query: 102 SVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157
           + +AL  LI+   P  +      K+WTPHR          + F ++++ Y P GDQP AI
Sbjct: 177 TAEALESLIREGRPEFRKDDGSLKVWTPHRPPRPEKSEGGVRF-EIKSAYEPKGDQPQAI 235

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +L++G+   ++ Q+LLGVTGSGKT+TMAKVIEA QRPA+++APNK LAAQLY EFK+FF
Sbjct: 236 KELVEGVARNDRTQVLLGVTGSGKTYTMAKVIEATQRPALILAPNKTLAAQLYGEFKSFF 295

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
           P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+S
Sbjct: 296 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVAS 355

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           VSCIYGIGSVE+Y+ M   LK G+ ++Q++L++ LV  QYKR      RGTFRV GD I+
Sbjct: 356 VSCIYGIGSVETYTAMTFALKKGERIDQRQLIADLVALQYKRTQHDFTRGTFRVRGDVID 415

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP+H ED AWRV++FG+ +E I EF PLTG K   +E IK+YANSHYVTPRPTL  AMK
Sbjct: 416 IFPAHYEDRAWRVNLFGDTVENIEEFDPLTGHKQDELEFIKVYANSHYVTPRPTLVQAMK 475

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            IK ELK+RL +L  +GRLLEAQRLEQR T+DLEM+E TGSC  IENYSRYLTGR PGEP
Sbjct: 476 SIKHELKIRLDQLHAQGRLLEAQRLEQRTTFDLEMMEATGSCAGIENYSRYLTGRLPGEP 535

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           PPTLFEY+P+++L+F DESHVTIPQI GM+RGDF RKATLAEYGFRLPSCMDNRPLRFEE
Sbjct: 536 PPTLFEYVPDNALVFADESHVTIPQIGGMFRGDFRRKATLAEYGFRLPSCMDNRPLRFEE 595

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           W+ +RP T+ VSATPG WEL +  G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+  E+  
Sbjct: 596 WDMMRPQTVAVSATPGGWELNEAGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLLGEVRA 655

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            AQ+G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV
Sbjct: 656 TAQKGYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 715

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+
Sbjct: 716 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQVTGSM 775

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------DPILLEDAATTNISIDAQ 751
           + A+ ET RRREKQ+E+N  H I P+SVK+ I +++      D +L+E    T       
Sbjct: 776 ERAMAETARRREKQVEYNTAHGITPESVKKSIGDILNSVYERDHVLIETGGGTTTD---D 832

Query: 752 QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +S+     +A L  L  +M  AA +LNFEEAAR+RDE+KRL+++
Sbjct: 833 VISIGHNF-EAVLADLETRMREAAADLNFEEAARLRDEVKRLRAT 876


>gi|86751253|ref|YP_487749.1| excinuclease ABC subunit B [Rhodopseudomonas palustris HaA2]
 gi|86574281|gb|ABD08838.1| Excinuclease ABC subunit B [Rhodopseudomonas palustris HaA2]
          Length = 1017

 Score =  964 bits (2491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/707 (64%), Positives = 555/707 (78%), Gaps = 16/707 (2%)

Query: 102 SVQALARLIQSDNPLLK----NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157
           + +AL  LI+   P  K    N K+W PHR          + F  +++DY P GDQP AI
Sbjct: 191 TAEALEALIRDGRPEFKGDDGNVKLWVPHRPPRPEKSEGGVRFV-IKSDYEPKGDQPTAI 249

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +L++GI   ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI++APNK LAAQLY EFK+FF
Sbjct: 250 KELVEGIARNDRTQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKSFF 309

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
           P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRHSATR+LLER+D I+V+S
Sbjct: 310 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALLERDDVIIVAS 369

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           VSCIYGIGSVE+Y+ M   LK G+ ++Q+ L++ LV  QYKR      RGTFRV GD I+
Sbjct: 370 VSCIYGIGSVETYTAMTFALKKGERIDQRALIADLVALQYKRTQADFTRGTFRVRGDVID 429

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP+H ED AWRV MFG+++E I EF PLTG K   +E +KIYANSHYVTPRPTL  A+K
Sbjct: 430 IFPAHYEDRAWRVKMFGDEVEAIEEFDPLTGHKQDELEFVKIYANSHYVTPRPTLIQAIK 489

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            IK ELK RL +L  +GRLLEAQRLEQR T+D+EM+E TGSC  IENYSRYLTGR PGEP
Sbjct: 490 SIKSELKWRLDQLHAQGRLLEAQRLEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEP 549

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           PPTLFEY+P+++L+F DESHVT+PQI GM++GDF RKATLAEYGFRLPSCMDNRPLRFEE
Sbjct: 550 PPTLFEYVPDNALVFADESHVTVPQIGGMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEE 609

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           W+ +RP ++ VSATP +WEL +  G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+  E+  
Sbjct: 610 WDMMRPQSVAVSATPAAWELNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRA 669

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            A  G R L+TVLTKRMAEDLTE+L+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV
Sbjct: 670 TANAGYRSLITVLTKRMAEDLTEFLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 729

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+
Sbjct: 730 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADHVTGSM 789

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------DPILLE--DAATTNISID 749
           Q A+DET RRREKQ+E+N  H I P+S+K+ I +++      D +L+E  D   +  + D
Sbjct: 790 QRAMDETGRRREKQIEYNTAHGITPESIKKSIGDILGSVYERDHVLVEIGDGKGSGFTDD 849

Query: 750 AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           A  +        A L  L  +M  AA +LNFEEAAR+RDE+KRL+++
Sbjct: 850 AAVIG---HNFGAVLADLETRMREAAADLNFEEAARLRDEVKRLRAT 893


>gi|254470279|ref|ZP_05083683.1| excinuclease ABC, B subunit, putative [Pseudovibrio sp. JE062]
 gi|211960590|gb|EEA95786.1| excinuclease ABC, B subunit, putative [Pseudovibrio sp. JE062]
          Length = 946

 Score =  964 bits (2491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/700 (64%), Positives = 553/700 (79%), Gaps = 8/700 (1%)

Query: 100 TPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQ 159
           T +VQALARLI+           W PHR          + F  +++++ P GDQP AIA 
Sbjct: 156 TATVQALARLIEQGRSDETGEDAWVPHRPERPQKSEGGVAF-SLESEFEPKGDQPTAIAD 214

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           L  G+   +K Q+LLGVTGSGKTFTMA++I   QRPA+++APNK LAAQLY EFK FFP+
Sbjct: 215 LKAGLADGDKTQVLLGVTGSGKTFTMAQLISQTQRPALILAPNKTLAAQLYGEFKAFFPN 274

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           NAVEYFVSYYDYYQPEAYV RTDT+IEKESSINEQIDRMRHSATR+LLER+D I+V+SVS
Sbjct: 275 NAVEYFVSYYDYYQPEAYVARTDTFIEKESSINEQIDRMRHSATRALLERDDVIIVASVS 334

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
           CIYGIGSVE+Y+ M  +L++G+ +EQ++LL+ LV   YKR D    RGTFRV GD+IE+F
Sbjct: 335 CIYGIGSVETYTAMTFKLEVGEKIEQRQLLADLVALHYKRNDAAFQRGTFRVRGDTIEVF 394

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P+H ED AWR+S++G++IE I+EF PLTG+K   ++ +KIYANSHYVTP+PTLN A+K I
Sbjct: 395 PAHYEDRAWRISLWGDEIESITEFDPLTGKKSGELQLVKIYANSHYVTPKPTLNQAIKSI 454

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
           K+ELK RL EL + GRLLEAQRL+QR T+DLEM+E TG+C  IENYSRYLTGR PGEPPP
Sbjct: 455 KKELKHRLDELNEHGRLLEAQRLDQRCTFDLEMMEATGACAGIENYSRYLTGRAPGEPPP 514

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519
           TLFEY+P+++L+F+DESHVT+PQI  MYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+
Sbjct: 515 TLFEYLPDNALVFIDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWD 574

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
            +RP T+ VSATPG WE+++  G+  EQ+IRPTGL DP +EIR A+TQV+D+  E+   A
Sbjct: 575 AMRPQTVAVSATPGGWEMDESGGVFAEQVIRPTGLTDPDIEIRPAKTQVDDLLGEVREKA 634

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             G R L+T LTKRMAEDLTEYL+E  +RVRYMHS++ TLERIEIIRDLRLG FDVL+GI
Sbjct: 635 ANGFRTLVTTLTKRMAEDLTEYLHENGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLIGI 694

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           NLLREGLDIPEC LVAILDADKEGFLRS+TSL+QTIGRAARNV+ KVILYAD +T S++ 
Sbjct: 695 NLLREGLDIPECALVAILDADKEGFLRSETSLVQTIGRAARNVDGKVILYADNMTGSMER 754

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
           AI ET RRR KQ  +N++H I P+SVK  I ++++ +  +D    ++S+DA         
Sbjct: 755 AIAETNRRRAKQEAYNEEHGITPESVKRSIGDILESVYEQD----HVSVDAGFAEEGATI 810

Query: 760 G---KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           G   KAH++ L KQM  AA +L FE AAR+RDE+KRL+ +
Sbjct: 811 GHNLKAHIEDLEKQMREAAADLEFETAARLRDEVKRLQET 850


>gi|163853453|ref|YP_001641496.1| excinuclease ABC subunit B [Methylobacterium extorquens PA1]
 gi|163665058|gb|ABY32425.1| excinuclease ABC, B subunit [Methylobacterium extorquens PA1]
          Length = 908

 Score =  963 bits (2490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/712 (62%), Positives = 569/712 (79%), Gaps = 2/712 (0%)

Query: 85  SMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQ 144
           + ++ +T  ++ + ++ +V+AL RL+   NPL KNG+ W PHR          + F  ++
Sbjct: 119 TAADAETPSLATEGVSATVEALERLLVEGNPLFKNGEAWVPHRPERPAKSEGGVKF-TLK 177

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           +++ P+GDQP AIA L++G+ + E+ Q+LLGVTGSGKTFTMAKVIE  QRPA+++APNK 
Sbjct: 178 SEFTPAGDQPTAIAALVEGVRTAERDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKT 237

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
           LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRHSATR
Sbjct: 238 LAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATR 297

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           +LLER+D I+V+SVSCIYGIGSVE+Y+ M   + +G+ +EQ++L++ LV  QYKR     
Sbjct: 298 ALLERDDVIIVASVSCIYGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQSDF 357

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            RGTFRV GD IE++P+HLED  WR+ +FG++IE I EF PLTG+K+  ++ +K+YANSH
Sbjct: 358 ARGTFRVRGDVIELWPAHLEDRGWRIGLFGDEIESIVEFDPLTGKKLNELKFVKVYANSH 417

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
           YVTPRPTL  A+K IK ELK+R+ EL + GRL+EAQRLEQR T+D+EM+E TG+C  IEN
Sbjct: 418 YVTPRPTLQQAIKGIKTELKLRVEELTRMGRLIEAQRLEQRCTFDIEMIEATGACNGIEN 477

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
           YSRYLTGR PGEPPPTLFEY+P+++L+F DESHVT+PQI GMY+GDF RKATLAEYGFRL
Sbjct: 478 YSRYLTGRKPGEPPPTLFEYLPDNALVFTDESHVTVPQIGGMYKGDFRRKATLAEYGFRL 537

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           PSC+DNRPLRFEEW+ +RP ++ VSATP  WE+E+  G+  EQ+IRPTGLVDP +EIR A
Sbjct: 538 PSCLDNRPLRFEEWDAMRPQSVHVSATPAKWEMERTAGVFAEQVIRPTGLVDPVIEIRPA 597

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R+QV+D+  E+   AQ G R L+T LTKRMAEDLTEYL+E ++RVRYMHS++ TLERIEI
Sbjct: 598 RSQVDDLLGEVREVAQAGYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLERIEI 657

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           IRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN ++
Sbjct: 658 IRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNADA 717

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
           + ILYAD IT S++ A+ ET RRR+KQL +N++H I PQSVK  I ++++ +   D    
Sbjct: 718 RCILYADNITGSMERAMAETERRRQKQLAYNEEHGITPQSVKRGISDILESVYERDHVRV 777

Query: 745 NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +  +    +++     KA +  L K+M  AA +L+FEEAAR+RDE+KRL+++
Sbjct: 778 DTGLAKDAITVGHNL-KAVMADLEKRMRAAAADLDFEEAARLRDELKRLQAT 828


>gi|90425612|ref|YP_533982.1| excinuclease ABC subunit B [Rhodopseudomonas palustris BisB18]
 gi|90107626|gb|ABD89663.1| Excinuclease ABC subunit B [Rhodopseudomonas palustris BisB18]
          Length = 1053

 Score =  963 bits (2489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/705 (65%), Positives = 553/705 (78%), Gaps = 11/705 (1%)

Query: 102 SVQALARLIQSDNPLLK----NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157
           +  AL  LI+   P  K    N K+WTPHR          + F  ++++Y P GDQP AI
Sbjct: 192 TADALENLIRDGRPEFKGEDGNVKLWTPHRPPRPEKTEGGVRFV-IKSEYEPKGDQPTAI 250

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +L++GI   ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI++APNK LAAQLY EFK+FF
Sbjct: 251 KELVEGISRNDRTQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKSFF 310

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
           P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+S
Sbjct: 311 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVAS 370

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           VSCIYGIGSVE+Y+ M   LK G+ ++Q+ L++ LV  QYKR      RGTFRV GD I+
Sbjct: 371 VSCIYGIGSVETYTAMTFALKKGERIDQRALIADLVALQYKRTQADFTRGTFRVRGDVID 430

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP+H ED AWRV++FG+ +E I EF PLTG K   +E IKIYANSHYVTPRPTL  A+K
Sbjct: 431 IFPAHYEDRAWRVNLFGDTVETIEEFDPLTGHKQDELEFIKIYANSHYVTPRPTLLQAIK 490

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            IK ELK RL +L  +GRLLEAQRLEQR T+D+EM+E TGSC  IENYSRYLTGR PGEP
Sbjct: 491 SIKAELKWRLDQLNDQGRLLEAQRLEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEP 550

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           PPTLFEY+P+++L+F DESHVT+PQI GM++GDF RKATLAEYGFRLPSCMDNRPLRFEE
Sbjct: 551 PPTLFEYVPDNALVFADESHVTVPQIGGMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEE 610

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           W+ +RP ++ VSATP +WEL +  G+ VEQ+IRPTGL+DPPV IR ARTQV+D+  E+  
Sbjct: 611 WDMMRPQSVAVSATPSAWELNESGGVFVEQVIRPTGLIDPPVNIRPARTQVDDLVGEVRA 670

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            AQ G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV
Sbjct: 671 TAQAGYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 730

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD IT S+
Sbjct: 731 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADRITGSM 790

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
           + AI ET RRREKQ+E+N +HNI P+S+K+ I ++++ +   D     I    Q  S S 
Sbjct: 791 ERAIAETDRRREKQVEYNTEHNITPESIKKSIGDILNSVYERDHVLVEIGGGGQGGSWSD 850

Query: 758 KKGK-AH-----LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             G   H     L  L  +M  AA +LNFEEAAR+RDE+KRL+++
Sbjct: 851 DVGAIGHNFETVLADLETRMREAAADLNFEEAARLRDEVKRLRAT 895


>gi|240140873|ref|YP_002965353.1| UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B)
           [Methylobacterium extorquens AM1]
 gi|240010850|gb|ACS42076.1| UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B)
           [Methylobacterium extorquens AM1]
          Length = 908

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/712 (62%), Positives = 568/712 (79%), Gaps = 2/712 (0%)

Query: 85  SMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQ 144
           +  + +T  ++ + ++ +V+AL RL+   NPL KNG+ W PHR          + F  ++
Sbjct: 119 TAPDAETPSLATEGVSATVEALERLLVEGNPLFKNGEAWVPHRPERPAKSEGGVKF-TLK 177

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           +++ P+GDQP AIA L++G+ + E+ Q+LLGVTGSGKTFTMAKVIE  QRPA+++APNK 
Sbjct: 178 SEFTPAGDQPTAIAALVEGVRTAERDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKT 237

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
           LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRHSATR
Sbjct: 238 LAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATR 297

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           +LLER+D I+V+SVSCIYGIGSVE+Y+ M   + +G+ +EQ++L++ LV  QYKR     
Sbjct: 298 ALLERDDVIIVASVSCIYGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQSDF 357

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            RGTFRV GD IE++P+HLED  WR+ +FG++IE I EF PLTG+K+  ++ +KIYANSH
Sbjct: 358 ARGTFRVRGDVIELWPAHLEDRGWRIGLFGDEIESIVEFDPLTGKKLNELKFVKIYANSH 417

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
           YVTPRPTL  A+K IK ELK+R+ EL + GRL+EAQRLEQR T+D+EM+E TG+C  IEN
Sbjct: 418 YVTPRPTLQQAIKGIKTELKLRVEELTRMGRLIEAQRLEQRCTFDIEMIEATGACNGIEN 477

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
           YSRYLTGR PGEPPPTLFEY+P+++L+F DESHVT+PQI GMY+GDF RKATLAEYGFRL
Sbjct: 478 YSRYLTGRKPGEPPPTLFEYLPDNALVFTDESHVTVPQIGGMYKGDFRRKATLAEYGFRL 537

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           PSC+DNRPLRFEEW+ +RP ++ VSATP  WE+E+  G+  EQ+IRPTGLVDP +EIR A
Sbjct: 538 PSCLDNRPLRFEEWDAMRPQSVHVSATPAKWEMERTAGVFAEQVIRPTGLVDPVIEIRPA 597

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R+QV+D+  E+   AQ G R L+T LTKRMAEDLTEYL+E ++RVRYMHS++ TLERIEI
Sbjct: 598 RSQVDDLLGEVREVAQAGYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLERIEI 657

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           IRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN ++
Sbjct: 658 IRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNADA 717

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
           + ILYAD IT S++ A+ ET RRR+KQL +N++H I PQSVK  I ++++ +   D    
Sbjct: 718 RCILYADNITGSMERAMAETERRRQKQLAYNEEHGITPQSVKRGISDILESVYERDHVRV 777

Query: 745 NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +  +    +++     KA +  L K+M  AA +L+FEEAAR+RDE+KRL+++
Sbjct: 778 DTGLAKDAITVGHNL-KAVMADLEKRMRAAAADLDFEEAARLRDELKRLQAT 828


>gi|209886295|ref|YP_002290152.1| excinuclease ABC subunit B [Oligotropha carboxidovorans OM5]
 gi|209874491|gb|ACI94287.1| excinuclease ABC subunit B [Oligotropha carboxidovorans OM5]
          Length = 981

 Score =  961 bits (2485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/698 (65%), Positives = 555/698 (79%), Gaps = 5/698 (0%)

Query: 102 SVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLL 161
           + +AL  LI+   P  +  KIWTPHR       S+     +++++Y P GDQP AI +L+
Sbjct: 154 TAEALEALIRDGRPEFRGDKIWTPHRP-PRPEKSEGGVRLELKSEYEPKGDQPQAIKELV 212

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
           +GI+ +++ Q+LLGVTGSGKT+TMA+VI A QRPA+++APNK LAAQLY EFKNFFP NA
Sbjct: 213 EGINRQDRTQVLLGVTGSGKTYTMAQVIAATQRPALILAPNKTLAAQLYGEFKNFFPDNA 272

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
           VEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRHSATR+LLER+D I+V+SVSCI
Sbjct: 273 VEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALLERDDVIIVASVSCI 332

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
           YGIGSVE+Y+ M   +K G+ ++Q+++++ LV  QYKR      RGTFRV GD+I+IFP+
Sbjct: 333 YGIGSVETYTAMTFAMKKGERIDQRQIIADLVALQYKRTSADFTRGTFRVRGDTIDIFPA 392

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
           H ED AWRV++FG+ IE I EF PLTG K   +E +KIYANSHYVTPRPTL  A+K IK 
Sbjct: 393 HYEDRAWRVNLFGDTIESIEEFDPLTGHKSDELEFVKIYANSHYVTPRPTLIQAIKNIKT 452

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           ELK RL +L  +GRLLEAQRLEQR T+DLEM+E TGSC  IENYSRYLTGR PGEPPPTL
Sbjct: 453 ELKWRLDQLHAQGRLLEAQRLEQRTTFDLEMMEATGSCAGIENYSRYLTGRKPGEPPPTL 512

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
           FEY+P+++L+F DESHVTIPQI GM+RGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +
Sbjct: 513 FEYVPDNALVFTDESHVTIPQIGGMFRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDMM 572

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           RP ++ VSATP +WELEQ  G+ VEQ+IRPTGL+DPPV IR ARTQV+D+  E+   A+ 
Sbjct: 573 RPQSVAVSATPAAWELEQSGGVFVEQVIRPTGLIDPPVHIRPARTQVDDLVGEVRETARN 632

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LVGINL
Sbjct: 633 GYRSLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALVGINL 692

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           LREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD IT S++ AI
Sbjct: 693 LREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQITGSMERAI 752

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG- 760
            ET RRREKQ+ +N+ H I P+SVK+ I ++++ +   D     +  D      +   G 
Sbjct: 753 AETDRRREKQVAYNEAHGITPESVKKSIGDILNSVYERDHVLVEVG-DGGMADDTVAIGH 811

Query: 761 --KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +  L  L  +M  AA +LNFEEAAR+RDE+KRL+++
Sbjct: 812 NFETVLADLETRMREAAADLNFEEAARLRDEVKRLRAT 849


>gi|218532313|ref|YP_002423129.1| excinuclease ABC subunit B [Methylobacterium chloromethanicum CM4]
 gi|218524616|gb|ACK85201.1| excinuclease ABC, B subunit [Methylobacterium chloromethanicum CM4]
          Length = 916

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/712 (62%), Positives = 568/712 (79%), Gaps = 2/712 (0%)

Query: 85  SMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQ 144
           +  + +T  ++ + ++ +V+AL RL+   NPL KNG+ W PHR          + F  ++
Sbjct: 127 TAPDGETPSLATEGVSATVEALERLLVEGNPLFKNGEAWVPHRPERPAKSEGGVKF-TLK 185

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           +++ P+GDQP AIA L++G+ + E+ Q+LLGVTGSGKTFTMAKVIE  QRPA+++APNK 
Sbjct: 186 SEFTPAGDQPTAIAALVEGVRTAERDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKT 245

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
           LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRHSATR
Sbjct: 246 LAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATR 305

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           +LLER+D I+V+SVSCIYGIGSVE+Y+ M   + +G+ +EQ++L++ LV  QYKR     
Sbjct: 306 ALLERDDVIIVASVSCIYGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQSDF 365

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            RGTFRV GD IE++P+HLED  WR+ +FG++IE I EF PLTG+K+  ++ +K+YANSH
Sbjct: 366 ARGTFRVRGDVIELWPAHLEDRGWRIGLFGDEIESIVEFDPLTGKKLNELKFVKVYANSH 425

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
           YVTPRPTL  A+K IK ELK+R+ EL + GRL+EAQRLEQR T+D+EM+E TG+C  IEN
Sbjct: 426 YVTPRPTLQQAIKGIKTELKLRVEELTRMGRLIEAQRLEQRCTFDIEMIEATGACNGIEN 485

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
           YSRYLTGR PGEPPPTLFEY+P+++L+F DESHVT+PQI GMY+GDF RKATLAEYGFRL
Sbjct: 486 YSRYLTGRKPGEPPPTLFEYLPDNALVFTDESHVTVPQIGGMYKGDFRRKATLAEYGFRL 545

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           PSC+DNRPLRFEEW+ +RP ++ VSATP  WE+E+  G+  EQ+IRPTGLVDP +EIR A
Sbjct: 546 PSCLDNRPLRFEEWDAMRPQSVHVSATPAKWEMERTAGVFAEQVIRPTGLVDPVIEIRPA 605

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R+QV+D+  E+   AQ G R L+T LTKRMAEDLTEYL+E ++RVRYMHS++ TLERIEI
Sbjct: 606 RSQVDDLLGEVREVAQAGYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLERIEI 665

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           IRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN ++
Sbjct: 666 IRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNADA 725

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
           + ILYAD IT S++ A+ ET RRR+KQL +N++H I PQSVK  I ++++ +   D    
Sbjct: 726 RCILYADNITGSMERAMAETERRRQKQLAYNEEHGITPQSVKRGISDILESVYERDHVRV 785

Query: 745 NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +  +    +++     KA +  L K+M  AA +L+FEEAAR+RDE+KRL+++
Sbjct: 786 DTGLAKDAITVGHNL-KAVMADLEKRMRAAAADLDFEEAARLRDELKRLQAT 836


>gi|91978448|ref|YP_571107.1| excinuclease ABC subunit B [Rhodopseudomonas palustris BisB5]
 gi|91684904|gb|ABE41206.1| Excinuclease ABC subunit B [Rhodopseudomonas palustris BisB5]
          Length = 1047

 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/707 (64%), Positives = 556/707 (78%), Gaps = 16/707 (2%)

Query: 102 SVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157
           + +AL  LI+   P  K      K+W PHR          + F  ++++Y P GDQP AI
Sbjct: 221 TAEALENLIREGRPEFKGDDGGVKLWVPHRPPRPEKSEGGVRFV-IKSEYEPKGDQPTAI 279

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +L++GI   ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI++APNK LAAQLY EFK+FF
Sbjct: 280 KELVEGIDRNDRTQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKSFF 339

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
           P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRHSATR+LLER+D I+V+S
Sbjct: 340 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALLERDDVIIVAS 399

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           VSCIYGIGSVE+Y+ M   LK G+ ++Q++L++ LV  QYKR      RGTFRV GD I+
Sbjct: 400 VSCIYGIGSVETYTAMTFALKKGERIDQRQLIADLVALQYKRTQADFTRGTFRVRGDVID 459

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP+H ED AWRV +FG+ +E I EF PLTG K   +E +KIYANSHYVTPRPTL  A+K
Sbjct: 460 IFPAHYEDRAWRVGLFGDTVETIEEFDPLTGHKQDELEFVKIYANSHYVTPRPTLIQAIK 519

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            IK ELK RL +L  +GRLLEAQRLEQR T+D+EM+E TGSC  IENYSRYLTGR PGEP
Sbjct: 520 SIKSELKWRLDQLHAQGRLLEAQRLEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEP 579

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           PPTLFEY+P+++L+F DESHVT+PQI GM++GDF RKATLAEYGFRLPSCMDNRPLRFEE
Sbjct: 580 PPTLFEYVPDNALVFADESHVTVPQIGGMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEE 639

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           W+ +RP ++ VSATP +WEL +  G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+  E+  
Sbjct: 640 WDMMRPQSVAVSATPAAWELNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRA 699

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            AQ G R L+TVLTKRMAEDLTE+L+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV
Sbjct: 700 TAQAGYRSLITVLTKRMAEDLTEFLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 759

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+
Sbjct: 760 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADHVTGSM 819

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------DPILLE--DAATTNISID 749
           Q A+DET RRREKQ+E+N  H I P+S+K+ I +++      D +L+E  D   +  + D
Sbjct: 820 QRAMDETGRRREKQIEYNTAHGITPESIKKSIGDILGSVYERDHVLVEIGDGKGSGFTDD 879

Query: 750 AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           A  +  +     A L  L  +M  AA +LNFEEAAR+RDE+KRL+++
Sbjct: 880 AAVIGHNF---GAVLADLETRMREAAADLNFEEAARLRDEVKRLRAT 923


>gi|220924991|ref|YP_002500293.1| excinuclease ABC subunit B [Methylobacterium nodulans ORS 2060]
 gi|219949598|gb|ACL59990.1| excinuclease ABC, B subunit [Methylobacterium nodulans ORS 2060]
          Length = 934

 Score =  960 bits (2481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/711 (63%), Positives = 559/711 (78%), Gaps = 2/711 (0%)

Query: 86  MSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQT 145
           ++E +   ++ Q ++ +V AL +L+   NPL K+GK W PHR          + F ++++
Sbjct: 131 LAEDKQTSLAAQGVSATVDALTKLLTEGNPLFKHGKPWVPHRPERPQKSEGGVPF-RLKS 189

Query: 146 DYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKIL 205
           D+ P+GDQP AIA L++G+   E+ Q+LLGVTGSGKTFTMAKVIE  QRPA+++APNK L
Sbjct: 190 DFTPAGDQPKAIADLVEGVRRSERDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKTL 249

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           AAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRH+ATR+
Sbjct: 250 AAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHAATRA 309

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           LLER+D I+V+SVSCIYGIGSVE+Y+ M   + +G+ +EQ++L++ LV  QYKR      
Sbjct: 310 LLERDDVIIVASVSCIYGIGSVETYTAMSFTVTLGERIEQRQLIADLVALQYKRVQSDFA 369

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           RGTFRV GD IE++P+HLED  WR+ +FG+++E I+EF PLTG+ +  ++ +KIYANSHY
Sbjct: 370 RGTFRVRGDVIELWPAHLEDRGWRIGLFGDEVEAITEFDPLTGKTVNPLKFVKIYANSHY 429

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
           VTPRPTL  A+K IK+ELK R+ EL + GRL+EAQRLEQR T+DLEM+E TGSC  IENY
Sbjct: 430 VTPRPTLQQAVKGIKDELKWRVEELTRMGRLIEAQRLEQRCTFDLEMIEATGSCNGIENY 489

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505
           SRYLTGR PGEPPPTLFEY+P+++L+F DESHVTI QI GMYRGDF RKATLAEYGFRLP
Sbjct: 490 SRYLTGRKPGEPPPTLFEYLPDNALVFTDESHVTISQIGGMYRGDFRRKATLAEYGFRLP 549

Query: 506 SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565
           SC+DNRPLRFEEW+ +RP ++ VSATP  WELEQ  G+ VEQ+IRPTGLVDP V IR AR
Sbjct: 550 SCLDNRPLRFEEWDAMRPQSVHVSATPAKWELEQTGGVFVEQVIRPTGLVDPEVIIRPAR 609

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +QV+D+  E+   AQ G R L+T LTKRMAEDLTEYL+E  +RVRYMHS++ TLERIEII
Sbjct: 610 SQVDDLLGEVKAVAQAGYRTLVTTLTKRMAEDLTEYLHENGVRVRYMHSDIDTLERIEII 669

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN   +
Sbjct: 670 RDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNAEGR 729

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN 745
           VILYAD  T S+  AI ET RRR KQL +N +H I PQSVK  I ++++ +   D    +
Sbjct: 730 VILYADQRTGSMDRAIAETERRRAKQLAYNAEHGITPQSVKRNIADILESVYERDHVQVD 789

Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +    +++     KA +  L K+M  AA +L+FEEAAR+RDE+KRL+++
Sbjct: 790 TGLAKGAVTVGHNL-KAVMADLEKRMRAAAADLDFEEAARLRDELKRLQAT 839


>gi|316935859|ref|YP_004110841.1| excinuclease ABC subunit B [Rhodopseudomonas palustris DX-1]
 gi|315603573|gb|ADU46108.1| excinuclease ABC, B subunit [Rhodopseudomonas palustris DX-1]
          Length = 1020

 Score =  959 bits (2480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/705 (64%), Positives = 550/705 (78%), Gaps = 12/705 (1%)

Query: 102 SVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157
           +  AL  LI+   P  K      K+W PHR          + F  +++DY P GDQP AI
Sbjct: 157 TADALESLIRDGRPEFKGEDGGVKLWVPHRPPRPEKSEGGVRFV-LKSDYQPRGDQPQAI 215

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +L++GI   ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI++APNK LAAQLY EFKNFF
Sbjct: 216 KELVEGIDRNDRTQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKNFF 275

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
           P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+S
Sbjct: 276 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVAS 335

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           VSCIYGIGSVE+Y+ M   LK G+ ++Q++L++ LV  QYKR      RGTFRV GD I+
Sbjct: 336 VSCIYGIGSVETYTAMTFALKRGERIDQRQLIADLVALQYKRTQADFTRGTFRVRGDVID 395

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP+H ED AWRV MFG++IE I EF PLTG K   +E +KIYANSHYVTPRPTL  A+ 
Sbjct: 396 IFPAHYEDRAWRVKMFGDEIEGIEEFDPLTGHKQDELEFVKIYANSHYVTPRPTLIQAIS 455

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            IK ELK RL +L  +GRLLEAQRLEQR T+D+EM+E TGSC  IENYSRYLTGR PGEP
Sbjct: 456 SIKTELKWRLDQLHAQGRLLEAQRLEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEP 515

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           PPTLFEY+P+++L+F DESHV++PQI  M++GDF RKATLAEYGFRLPSCMDNRPLRFEE
Sbjct: 516 PPTLFEYVPDNALVFADESHVSVPQIGAMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEE 575

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           W+ +RP T+ VSATP +WEL +  G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+  E+  
Sbjct: 576 WDMMRPQTVAVSATPAAWELNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRA 635

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            A +G R L+TVLTKRMAEDLTE+L+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV
Sbjct: 636 TAARGYRTLITVLTKRMAEDLTEFLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 695

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD IT S+
Sbjct: 696 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQITGSM 755

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
           Q +IDET RRREKQ+E+N  H I P+SVK+ I ++++ +   D     I  D +    + 
Sbjct: 756 QRSIDETNRRREKQIEYNTAHGITPESVKKSIGDILNSVYERDHVLVEIG-DGKGAGFTD 814

Query: 758 KKG------KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                    +A L  L  +M  AA +LNFEEAAR+RDE+KRL+++
Sbjct: 815 DAAVIGHNFEAVLADLESRMREAAADLNFEEAARLRDEVKRLRAT 859


>gi|192293183|ref|YP_001993788.1| excinuclease ABC subunit B [Rhodopseudomonas palustris TIE-1]
 gi|192286932|gb|ACF03313.1| excinuclease ABC, B subunit [Rhodopseudomonas palustris TIE-1]
          Length = 1011

 Score =  959 bits (2478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/705 (64%), Positives = 552/705 (78%), Gaps = 12/705 (1%)

Query: 102 SVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157
           + +AL  LI+   P  K      K+W PHR          + F  +++DY P GDQP AI
Sbjct: 158 TAEALESLIRDGRPEFKGEDGGVKLWVPHRPPRPEKSEGGVRFV-LKSDYQPRGDQPTAI 216

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +L++G+   ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI++APNK LAAQLY EFKNFF
Sbjct: 217 KELVEGLDRSDRTQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKNFF 276

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
           P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+S
Sbjct: 277 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVAS 336

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           VSCIYGIGSVE+Y+ M   LK G+ ++Q++L++ LV  QYKR      RGTFRV GD I+
Sbjct: 337 VSCIYGIGSVETYTAMTFALKRGERIDQRQLIADLVALQYKRTQADFSRGTFRVRGDVID 396

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP+H ED AWRV MFG++IE I EF PLTG K   +E +KIYANSHYVTPRPTL  A++
Sbjct: 397 IFPAHYEDRAWRVKMFGDEIEGIEEFDPLTGHKQDELEFVKIYANSHYVTPRPTLIQAIQ 456

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            IK ELK RL +L  +GRLLEAQRLEQR T+D+EM+E TGSC  IENYSRYLTGR PGEP
Sbjct: 457 SIKTELKWRLDQLHAQGRLLEAQRLEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEP 516

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           PPTLFEY+P+++L+F DESHV+IPQI  M++GDF RKATLAEYGFRLPSCMDNRPLRFEE
Sbjct: 517 PPTLFEYVPDNALVFADESHVSIPQIGAMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEE 576

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           W+ +RP T+ VSATP +WEL +  G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+  E+  
Sbjct: 577 WDMMRPQTVAVSATPAAWELNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRA 636

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            A +G R L+TVLTKRMAEDLTE+L+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV
Sbjct: 637 TAARGYRTLITVLTKRMAEDLTEFLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 696

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+
Sbjct: 697 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQMTGSM 756

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
           Q +IDET RRREKQ+E+N  H I P+SVK+ I ++++ +   D     I  D +    + 
Sbjct: 757 QRSIDETNRRREKQIEYNTAHGITPESVKKSIGDILNSVYERDHVLVEIG-DGKGAGFTD 815

Query: 758 KKG------KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                    +A L  L  +M  AA +LNFEEAAR+RDE+KRL+++
Sbjct: 816 DAAVIGHNFEAVLADLETRMREAAADLNFEEAARLRDEVKRLRAT 860


>gi|254563382|ref|YP_003070477.1| UvrABC system protein B [Methylobacterium extorquens DM4]
 gi|254270660|emb|CAX26664.1| UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B)
           [Methylobacterium extorquens DM4]
          Length = 908

 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/712 (62%), Positives = 567/712 (79%), Gaps = 2/712 (0%)

Query: 85  SMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQ 144
           +  + +T  ++ + ++ +V+AL RL+   NPL KNG+ W PHR          + F  ++
Sbjct: 119 TAPDAETPSLATEGVSATVEALERLLVEGNPLFKNGEAWVPHRPERPAKSEGGVKF-TLK 177

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           +++ P+GDQP AIA L++G+ + E+ Q+LLGVTGSGKTFTMAKVIE  QRPA+++APNK 
Sbjct: 178 SEFTPAGDQPTAIAALVEGVRTAERDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKT 237

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
           LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRHSATR
Sbjct: 238 LAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATR 297

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           +LLER+D I+V+SVSCIYGIGSVE+Y+ M   + +G+ +EQ++L++ LV  QYKR     
Sbjct: 298 ALLERDDVIIVASVSCIYGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQSDF 357

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            RGTFRV GD IE++P+HLED  WR+ +FG++IE I EF PLTG+K+  ++ +K+YANSH
Sbjct: 358 ARGTFRVRGDVIELWPAHLEDRGWRIGLFGDEIESIVEFDPLTGKKLNELKFVKVYANSH 417

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
           YVTPRPTL  A+K IK ELK+R+ EL + GRL+EAQRLEQR T+D+EM+E TG+C  IEN
Sbjct: 418 YVTPRPTLQQAIKGIKTELKLRVEELTRMGRLIEAQRLEQRCTFDIEMIEATGACNGIEN 477

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
           YSRYLTGR PGEPPPTLFEY+P+++L+F DESHVT+PQI GMY+ DF RKATLAEYGFRL
Sbjct: 478 YSRYLTGRKPGEPPPTLFEYLPDNALVFTDESHVTVPQIGGMYKSDFRRKATLAEYGFRL 537

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           PSC+DNRPLRFEEW+ +RP ++ VSATP  WE+E+  G+  EQ+IRPTGLVDP +EIR A
Sbjct: 538 PSCLDNRPLRFEEWDAMRPQSVHVSATPAKWEMERTAGVFAEQVIRPTGLVDPVIEIRPA 597

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R+QV+D+  E+   AQ G R L+T LTKRMAEDLTEYL+E ++RVRYMHS++ TLERIEI
Sbjct: 598 RSQVDDLLGEVREVAQAGYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLERIEI 657

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           IRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN ++
Sbjct: 658 IRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNADA 717

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
           + ILYAD IT S++ A+ ET RRR+KQL +N++H I PQSVK  I ++++ +   D    
Sbjct: 718 RCILYADNITGSMERAMAETERRRQKQLAYNEEHGITPQSVKRGISDILESVYERDHVRV 777

Query: 745 NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +  +    +++     KA +  L K+M  AA +L+FEEAAR+RDE+KRL+++
Sbjct: 778 DTGLAKDAITVGHNL-KAVMADLEKRMRAAAADLDFEEAARLRDELKRLQAT 828


>gi|299134277|ref|ZP_07027470.1| excinuclease ABC, B subunit [Afipia sp. 1NLS2]
 gi|298591024|gb|EFI51226.1| excinuclease ABC, B subunit [Afipia sp. 1NLS2]
          Length = 959

 Score =  958 bits (2476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/697 (64%), Positives = 556/697 (79%), Gaps = 3/697 (0%)

Query: 102 SVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLL 161
           +  AL  LI+   P  +  KIWTPHR       S+    F+++++Y P GDQP AIA+L+
Sbjct: 142 TADALESLIKEGRPEFRGDKIWTPHRP-PRPEKSEGGVRFELKSEYQPKGDQPQAIAELV 200

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
           +GI+ +++ Q+LLGVTGSGKT+TMA+VI A QRPA+++APNK LAAQLY EFK+FFP NA
Sbjct: 201 EGINRKDRTQVLLGVTGSGKTYTMAQVIAATQRPALILAPNKTLAAQLYGEFKSFFPDNA 260

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
           VEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRHSATR+LLER+D I+V+SVSCI
Sbjct: 261 VEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALLERDDVIIVASVSCI 320

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
           YGIGSVE+Y+ M   LK G+ ++Q+++++ LV  QYKR      RGTFRV GD+I+IFP+
Sbjct: 321 YGIGSVETYTAMTFSLKKGERIDQRQIIADLVALQYKRTQADFARGTFRVRGDTIDIFPA 380

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
           H ED AWRV++FG+++E I EF PLTG K   +E +KIYANSHYVTPRPTL  A+K IK 
Sbjct: 381 HYEDRAWRVNLFGDEVESIEEFDPLTGHKSDELEFVKIYANSHYVTPRPTLIQAIKGIKS 440

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           ELK RL +L  +GRLLEAQRLEQR T+DLEM+E TGSC  IENYSRYLTGR PGEPPPTL
Sbjct: 441 ELKWRLDQLHAQGRLLEAQRLEQRTTFDLEMMEATGSCAGIENYSRYLTGRKPGEPPPTL 500

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
           FEY+P+++L+F DESHVTIPQI GM++GDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +
Sbjct: 501 FEYVPDNALVFADESHVTIPQIGGMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDMM 560

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           RP ++ VSATP +WE+ +  G+ VEQ+IRPTGL+DPPV IR ARTQV+D+  E+   A +
Sbjct: 561 RPQSVAVSATPAAWEMNESGGVFVEQVIRPTGLIDPPVNIRPARTQVDDLLGEVRATAAK 620

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LVGINL
Sbjct: 621 GYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALVGINL 680

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           LREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S++ AI
Sbjct: 681 LREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQMTGSMERAI 740

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID--AQQLSLSKKK 759
            ET RRREKQ+ +N+ + I P+SVK+ I ++++ +   D     +     A  +      
Sbjct: 741 AETDRRREKQVAYNEANGITPESVKKSIGDILNSVYERDHVLVEVGDGGMADDVISIGHN 800

Query: 760 GKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +A L  L  +M  AA +LNFEEAAR+RDE+KRL+++
Sbjct: 801 FEAVLADLETRMREAAADLNFEEAARLRDEVKRLRAT 837


>gi|39937403|ref|NP_949679.1| excinuclease ABC subunit B [Rhodopseudomonas palustris CGA009]
 gi|39651262|emb|CAE29784.1| possible excinuclease ABC subunit B [Rhodopseudomonas palustris
           CGA009]
          Length = 862

 Score =  958 bits (2476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/705 (64%), Positives = 552/705 (78%), Gaps = 12/705 (1%)

Query: 102 SVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157
           + +AL  LI+   P  K      K+W PHR          + F  +++DY P GDQP AI
Sbjct: 9   TAEALESLIRDGRPEFKGEDGGVKLWVPHRPPRPEKSEGGVRFV-LKSDYQPRGDQPTAI 67

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +L++GI   ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI++APNK LAAQLY EFKNFF
Sbjct: 68  KELVEGIDRNDRTQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKNFF 127

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
           P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+S
Sbjct: 128 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVAS 187

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           VSCIYGIGSVE+Y+ M   LK G+ ++Q++L++ LV  QYKR      RGTFRV GD I+
Sbjct: 188 VSCIYGIGSVETYTAMTFALKRGERIDQRQLIADLVALQYKRTQADFSRGTFRVRGDVID 247

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP+H ED AWRV MFG++IE I EF PLTG K   +E +KIYANSHYVTPRPTL  A++
Sbjct: 248 IFPAHYEDRAWRVKMFGDEIEGIEEFDPLTGHKQDELEFVKIYANSHYVTPRPTLIQAIQ 307

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            IK ELK RL +L  +GRLLEAQRLEQR T+D+EM+E TGSC  IENYSRYLTGR PGEP
Sbjct: 308 SIKTELKWRLDQLHAQGRLLEAQRLEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEP 367

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           PPTLFEY+P+++L+F DESHV+IPQI  M++GDF RKATLAEYGFRLPSCMDNRPLRFEE
Sbjct: 368 PPTLFEYVPDNALVFADESHVSIPQIGAMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEE 427

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           W+ +RP T+ VSATP +WEL +  G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+  E+  
Sbjct: 428 WDMMRPPTVAVSATPAAWELNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRA 487

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            A +G R L+TVLTKRMAEDLTE+L+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV
Sbjct: 488 TAARGYRTLITVLTKRMAEDLTEFLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 547

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+
Sbjct: 548 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQMTGSM 607

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
           Q +IDET RRREKQ+E+N  H I P+SVK+ I ++++ +   D     I  D +    + 
Sbjct: 608 QRSIDETNRRREKQIEYNTAHGITPESVKKSIGDILNSVYERDHVLVEIG-DGKGAGFTD 666

Query: 758 KKG------KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                    +A L  L  +M  AA +LNFEEAAR+RDE+KRL+++
Sbjct: 667 DAAVIGHNFEAVLADLETRMREAAADLNFEEAARLRDEVKRLRAT 711


>gi|92118421|ref|YP_578150.1| excinuclease ABC subunit B [Nitrobacter hamburgensis X14]
 gi|91801315|gb|ABE63690.1| Excinuclease ABC subunit B [Nitrobacter hamburgensis X14]
          Length = 1011

 Score =  957 bits (2474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/702 (64%), Positives = 557/702 (79%), Gaps = 9/702 (1%)

Query: 102 SVQALARLIQSDNPLLK--NG--KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157
           + ++L  L++   P  +  NG  K+WTPHR          + F  ++++Y P GDQP AI
Sbjct: 178 TAESLEALLRDGRPEFRGDNGAMKVWTPHRPPRPEKSEGGVRFV-IKSEYEPKGDQPTAI 236

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +L++GI+  ++ Q+LLGVTGSGKT+TMAKVIEA QRPA+++APNK LAAQLY EFK+FF
Sbjct: 237 KELVEGINRNDRTQVLLGVTGSGKTYTMAKVIEATQRPALILAPNKTLAAQLYGEFKSFF 296

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
           P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRHSATR+LLER+D I+V+S
Sbjct: 297 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALLERDDVIIVAS 356

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           VSCIYGIGSVE+Y+ M   L+ G+ ++Q++L++ LV  QYKR      RGTFRV GD I+
Sbjct: 357 VSCIYGIGSVETYTAMTFALRRGERIDQRQLIADLVALQYKRTSADFTRGTFRVRGDVID 416

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP+H ED +WRV++FG+++E I EF PLTG K   +E IK+Y+NSHYVTPRPTL  A+K
Sbjct: 417 IFPAHYEDRSWRVNLFGDEVESIEEFDPLTGHKQDELEFIKVYSNSHYVTPRPTLIQAIK 476

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            IK ELKMRL EL  +GRLLEAQRLEQR T+DLEM+E TGSC  IENYSRYLTGR PGEP
Sbjct: 477 SIKSELKMRLDELHAQGRLLEAQRLEQRTTFDLEMMEATGSCAGIENYSRYLTGRRPGEP 536

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           PPTLFEY+P+++L+F DESHV++PQI GM+RGDF RKATLAEYGFRLPSCMDNRPLRFEE
Sbjct: 537 PPTLFEYVPDNALVFADESHVSVPQIGGMFRGDFRRKATLAEYGFRLPSCMDNRPLRFEE 596

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           W+ +RP ++ VSATP +WEL +  G+ VEQ+IRPTGL+DPP++IR ARTQV+D+  E+  
Sbjct: 597 WDMMRPQSVAVSATPSAWELNESGGVFVEQVIRPTGLIDPPIDIRPARTQVDDLVGEVRA 656

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            A  G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV
Sbjct: 657 TAAAGYRSLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 716

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD +T S+
Sbjct: 717 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADQVTGSM 776

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
           Q AI ET RRREKQ+E+N  H I P+S+K+ I ++++ +   D     I  D      + 
Sbjct: 777 QRAIAETDRRREKQVEYNTVHGITPESIKKSIGDILNSVYERDHVLVEIG-DGGMADDAV 835

Query: 758 KKG---KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             G   +A L  L  +M  AA +LNFEEAAR+RDE+KRL+++
Sbjct: 836 AIGHNFEAVLSDLETRMREAAADLNFEEAARLRDEVKRLRAT 877


>gi|27382542|ref|NP_774071.1| excinuclease ABC subunit B [Bradyrhizobium japonicum USDA 110]
 gi|27355714|dbj|BAC52696.1| excinuclease ABC subunit B [Bradyrhizobium japonicum USDA 110]
          Length = 975

 Score =  957 bits (2474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/703 (65%), Positives = 553/703 (78%), Gaps = 11/703 (1%)

Query: 102 SVQALARLIQSDNPLLK----NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157
           +  AL  LI+   P  +    + K+WTPHR          + F ++++ Y P GDQP AI
Sbjct: 151 TADALESLIREGRPEFRKDDGSTKVWTPHRPPRPEKSEGGVRF-EIKSHYEPRGDQPTAI 209

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
           A+L++GI   ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI++APNK LAAQLY EFKNFF
Sbjct: 210 AELVEGIERNDRSQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKNFF 269

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
           P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRHSATR+LLER+D I+V+S
Sbjct: 270 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALLERDDVIIVAS 329

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           VSCIYGIGSVE+Y+ M   LK G+ ++Q++L++ LV  QYKR      RGTFRV GD I+
Sbjct: 330 VSCIYGIGSVETYTAMTFALKKGERIDQRQLIADLVALQYKRTQADFTRGTFRVRGDVID 389

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP+H ED AWRV++FG+ IE I EF PLTG K   +E IK+YANSHYVTPRPTL  A+K
Sbjct: 390 IFPAHYEDRAWRVNLFGDTIETIEEFDPLTGHKQDELEFIKMYANSHYVTPRPTLVQAIK 449

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            IK ELK RL +L  +GRLLEAQRLEQR T+DLEM+E TGSC  IENYSRYLTGR PGEP
Sbjct: 450 SIKSELKQRLDQLHDQGRLLEAQRLEQRTTFDLEMMEATGSCAGIENYSRYLTGRLPGEP 509

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           PPTLFEY+P+++L+F DESHVT+PQI  M++GDF RKATLAEYGFRLPSCMDNRPLRFEE
Sbjct: 510 PPTLFEYVPDNALVFADESHVTVPQIGAMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEE 569

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           W+ +RP TI VSATP  WEL +  G+ VEQ+IRPTGL+DPPV IR ARTQV+D+  E+  
Sbjct: 570 WDMMRPQTIAVSATPSGWELNESGGVFVEQVIRPTGLIDPPVNIRPARTQVDDLVGEVRA 629

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            AQ G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV
Sbjct: 630 TAQAGYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 689

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+
Sbjct: 690 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQMTGSM 749

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS- 756
           + AI ET RRREKQ+E+N  + I P+SVK++I ++++ +   D     + +  Q ++   
Sbjct: 750 ERAIAETNRRREKQVEYNTANGITPESVKKQIGDILNSVYERDHVL--VEVGGQDMTDDV 807

Query: 757 ---KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                  +A L  L  +M  AA +LNFEEAAR+RDE+KRL+++
Sbjct: 808 ISIGHNFEAVLADLETRMREAAADLNFEEAARLRDEVKRLRAT 850


>gi|170742630|ref|YP_001771285.1| excinuclease ABC subunit B [Methylobacterium sp. 4-46]
 gi|168196904|gb|ACA18851.1| excinuclease ABC, B subunit [Methylobacterium sp. 4-46]
          Length = 917

 Score =  955 bits (2469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/711 (63%), Positives = 557/711 (78%), Gaps = 2/711 (0%)

Query: 86  MSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQT 145
           ++E+    ++   ++ +V AL +L+   NPL K+GK W PHR          + F ++++
Sbjct: 100 LAEEPGASLAAAGVSATVDALTKLLTEGNPLFKDGKPWVPHRPERPQKSEGGVAF-RLKS 158

Query: 146 DYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKIL 205
           D+ P+GDQP AIA L++G+   E+ Q+LLGVTGSGKTFTMAKVIE  QRPA+++APNK L
Sbjct: 159 DFSPAGDQPKAIADLVEGVRRSERDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKTL 218

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           AAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRHSATR+
Sbjct: 219 AAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATRA 278

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           LLER+D I+V+SVSCIYGIGSVE+Y+ M   + +G+ +EQ++L++ LV  QYKR      
Sbjct: 279 LLERDDVIIVASVSCIYGIGSVETYTAMSFTVTLGERIEQRQLIADLVALQYKRIQSDFA 338

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           RGTFRV GD IE++P+HLED  WR+ +FG+++E I+EF PLTG+ I  ++ +KIYANSHY
Sbjct: 339 RGTFRVRGDVIELWPAHLEDRGWRIGLFGDEVEAITEFDPLTGKTINPLKFVKIYANSHY 398

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
           VTPRPTL  A+K IK+ELK R+ EL + GRL+EAQRLEQR T+DLEM+E TG+C  IENY
Sbjct: 399 VTPRPTLQQAVKGIKDELKRRVEELTRMGRLIEAQRLEQRCTFDLEMIEATGACNGIENY 458

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505
           SRYLTGR PGEPPPTLFEY+P+++L+F DESHVTI QI GMYRGDF RKATLAEYGFRLP
Sbjct: 459 SRYLTGRKPGEPPPTLFEYLPDNALVFTDESHVTISQIGGMYRGDFRRKATLAEYGFRLP 518

Query: 506 SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565
           SC+DNRPLRFEEW+ +RP +I VSATP  WE+EQ  G+ VEQ+IRPTGLVDP V IR AR
Sbjct: 519 SCLDNRPLRFEEWDAMRPQSIHVSATPAKWEMEQTGGVFVEQVIRPTGLVDPEVIIRPAR 578

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +QV+D+  E+   A  G R L+T LTKRMAEDLTEYL+E  +RVRYMHS++ TLERIEII
Sbjct: 579 SQVDDLLGEVKEVAAAGYRTLVTTLTKRMAEDLTEYLHENGVRVRYMHSDIDTLERIEII 638

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN   +
Sbjct: 639 RDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNAEGR 698

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN 745
           VILYAD  T S+  AI ET RRR KQL +N +H I PQSVK  I ++++ +   D    +
Sbjct: 699 VILYADQRTGSMDRAIAETERRRAKQLAYNAEHGITPQSVKRNIADILESVFERDHVQVD 758

Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +    +++     KA +  L K+M  AA +L+FEEAAR+RDE+KRL+++
Sbjct: 759 TGLAKGGVTVGHNL-KAVMADLEKRMRAAAADLDFEEAARLRDELKRLQAT 808


>gi|217979770|ref|YP_002363917.1| excinuclease ABC, B subunit [Methylocella silvestris BL2]
 gi|217505146|gb|ACK52555.1| excinuclease ABC, B subunit [Methylocella silvestris BL2]
          Length = 879

 Score =  954 bits (2466), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/694 (65%), Positives = 553/694 (79%), Gaps = 2/694 (0%)

Query: 102 SVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLL 161
           +V++L  L++  +P L+    WTPHR    +     + F ++ ++Y P GDQPAAI +L+
Sbjct: 103 TVESLKDLLERGDPNLREKTPWTPHRPDRPDKSEGGVKF-KLVSEYEPKGDQPAAIEELV 161

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
           KGI + E+ Q+LLGVTGSGKTFTMA+VI+   RPA+V+APNK LAAQLY EFK+FFP NA
Sbjct: 162 KGIAAHERDQVLLGVTGSGKTFTMAQVIQRTNRPALVLAPNKTLAAQLYGEFKSFFPDNA 221

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
           VEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRH+ATR+LLER+D I+V+SVSCI
Sbjct: 222 VEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCI 281

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
           YGIGSVE+Y+ M   +K G+ ++Q++L++ LV  QYKR      RG FRV GD+I++FP+
Sbjct: 282 YGIGSVETYTAMTFTVKAGERIDQRQLIADLVALQYKRSAGDFSRGVFRVRGDTIDLFPA 341

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
           H ED AWR++ FG+ IE ISEF PLTG+K +++E +KIYANSHYVTPRPTL  ++K IK 
Sbjct: 342 HYEDRAWRINFFGDSIETISEFDPLTGKKTQDLEFVKIYANSHYVTPRPTLLQSIKGIKI 401

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           ELK RL EL   GRLLEAQRLEQR  +DLEMLE TGSC  IENYSRYLTGR PGEPPPTL
Sbjct: 402 ELKQRLAELYAGGRLLEAQRLEQRCMFDLEMLEATGSCAGIENYSRYLTGRRPGEPPPTL 461

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
           FEY+P+++L+F DESHVT+PQI  MYRGDF RKATLAEYGFRLPSC+DNRPLRFEEW  +
Sbjct: 462 FEYLPDNALVFTDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCLDNRPLRFEEWEAM 521

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           RP TI VSATPGSWE+E+  G+ VEQIIRPTGL+DPPVEIR AR+QV+D+  E+   A +
Sbjct: 522 RPQTIHVSATPGSWEMERTGGVFVEQIIRPTGLIDPPVEIRPARSQVDDLLGEVREVALR 581

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G R L+TVLTKRMAEDLTEYL+E  +RVRYMHS++ T+ERIEIIRDLRLG FD LVGINL
Sbjct: 582 GYRSLITVLTKRMAEDLTEYLHEHGVRVRYMHSDIDTIERIEIIRDLRLGAFDALVGINL 641

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           LREGLDIPEC LVAILDADKEGFLRS+TSL+QTIGRAARN++ KVILYAD  T S+Q AI
Sbjct: 642 LREGLDIPECSLVAILDADKEGFLRSETSLVQTIGRAARNIDGKVILYADRETGSMQRAI 701

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761
            ET+RRR+KQ  +N +H I P S+K  I +++  +   D  T +  +   Q SL     K
Sbjct: 702 AETSRRRDKQTAYNLEHGITPASIKRGIQDILGSVYERDHVTVDAGLVGAQ-SLVGHNFK 760

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A +  L K+M  AA +L+FEEAAR+RDE+KRL++
Sbjct: 761 ATVTDLEKRMRAAAADLDFEEAARLRDELKRLQA 794


>gi|296444513|ref|ZP_06886478.1| excinuclease ABC, B subunit [Methylosinus trichosporium OB3b]
 gi|296258160|gb|EFH05222.1| excinuclease ABC, B subunit [Methylosinus trichosporium OB3b]
          Length = 842

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/699 (63%), Positives = 556/699 (79%), Gaps = 6/699 (0%)

Query: 99  MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158
           +T ++++L +L++  +P L+  K WTPHR          + F  + +DY P GDQP AIA
Sbjct: 78  VTATMESLEQLLKLGDPNLREKKPWTPHRPERPQKSEGGVKF-DLVSDYEPRGDQPQAIA 136

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +L  G+ + E+ Q+LLGVTGSGKT+TMA+VI   QRPA+V+APNK LAAQLY EFK+FFP
Sbjct: 137 ELTAGVGANERDQVLLGVTGSGKTYTMAQVIARTQRPALVLAPNKTLAAQLYGEFKSFFP 196

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
           +NAVEYFVSYYDYYQPEAYVPRTDTYIEKESS+NEQIDRMRH+ATRSLLER+D I+V+SV
Sbjct: 197 NNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSVNEQIDRMRHAATRSLLERDDVIIVASV 256

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           SCIYGIGSVE+Y+ M   + +G+ +EQ++L++ LV  QY+R      RGTFRV GD+++I
Sbjct: 257 SCIYGIGSVETYTAMTFGVSLGEKLEQRQLVTDLVALQYRRISSDFTRGTFRVRGDTVDI 316

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP+H ED  WR+S FG+++E I EF PLTG+K +++E +K+YANSHYVTPRPTL  ++K 
Sbjct: 317 FPAHYEDRGWRISFFGDEVESICEFDPLTGKKTQDLEFVKVYANSHYVTPRPTLLQSIKA 376

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           IK+EL+ RL EL   GRL+EAQRLEQR  +DLEM+E TGSC  IENYSRYLTGR PGEPP
Sbjct: 377 IKDELRARLGELNNAGRLVEAQRLEQRTRFDLEMMEATGSCAGIENYSRYLTGRRPGEPP 436

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           PTLFEY+P+++++F DESHV+IPQI  MY+GDF RKATLAEYGFRLPSCMDNRPLRFEEW
Sbjct: 437 PTLFEYLPDNAIVFADESHVSIPQIGAMYKGDFRRKATLAEYGFRLPSCMDNRPLRFEEW 496

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           + +RP TI VSATPG WE+EQ  G+ VEQ+IRPTGL+DPPVEIR AR+QV+D+  E+   
Sbjct: 497 DAMRPQTIAVSATPGDWEMEQTGGVFVEQVIRPTGLIDPPVEIRPARSQVDDLLGEVKAV 556

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +  G R L+TVLTKRMAEDLTEYL+E  +RVRYMHS++ T+ERIEIIRDLRLG FDVLVG
Sbjct: 557 SDLGYRSLVTVLTKRMAEDLTEYLHENGVRVRYMHSDIDTIERIEIIRDLRLGAFDVLVG 616

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           INLLREGLDIPECG V ILDADKEGFLRS+TSL+QTIGRAARNV+ +VILYAD++T S++
Sbjct: 617 INLLREGLDIPECGFVGILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADSVTGSMK 676

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
            A+DET RRR KQ  +N +H I P S+K  I +++  +  +D    ++++DA    L+  
Sbjct: 677 RAMDETDRRRAKQQAYNAEHGITPASIKRDIADILGSLAEQD----HVTVDAGLSELAPG 732

Query: 759 KG-KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              +A L  L K+M  AA +L FEEAAR+RDEI RL+ +
Sbjct: 733 HNMQATLADLEKRMKAAAADLAFEEAARLRDEISRLQRA 771


>gi|85716011|ref|ZP_01046988.1| excinuclease ABC subunit B [Nitrobacter sp. Nb-311A]
 gi|85697209|gb|EAQ35090.1| excinuclease ABC subunit B [Nitrobacter sp. Nb-311A]
          Length = 1008

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/705 (63%), Positives = 555/705 (78%), Gaps = 11/705 (1%)

Query: 102 SVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAI 157
           + ++L  L++   P  K      K+WTPHR          + F +++++Y P GDQP AI
Sbjct: 171 TAESLEALLRDGRPEFKKDDGSLKLWTPHRPPRPEKSEGGVRF-EIKSEYQPKGDQPQAI 229

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +L++GI   ++ Q+LLGVTGSGKT+TMAKVIEA QRPA+++APNK LAAQLY EFK+FF
Sbjct: 230 RELVEGIRRNDRTQVLLGVTGSGKTYTMAKVIEATQRPALILAPNKTLAAQLYGEFKSFF 289

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
           P NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+S
Sbjct: 290 PDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVAS 349

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           VSCIYGIGSVE+Y+ M   L+ G+ ++Q++L++ LV  QYKR      RGTFRV GD I+
Sbjct: 350 VSCIYGIGSVETYTAMTFALRRGERIDQRQLIADLVALQYKRTSADFTRGTFRVRGDVID 409

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP+H ED AWRV++FG+++E I EF PLTG K   ++ IK+Y+NSHYVTPRPTL  A+K
Sbjct: 410 IFPAHYEDRAWRVNLFGDEVESIEEFDPLTGHKQDELDFIKVYSNSHYVTPRPTLVQAIK 469

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            IK ELK RL +L  +GRLLEAQRLEQR T+DLEM+E TGSC  IENYSRYLTGR PGEP
Sbjct: 470 SIKVELKQRLDQLHAQGRLLEAQRLEQRTTFDLEMMEATGSCAGIENYSRYLTGRRPGEP 529

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           PPTLFEY+P+++L+F DESHV++PQI GM+RGDF RKATLAEYGFRLPSCMDNRPLRFEE
Sbjct: 530 PPTLFEYVPDNALVFADESHVSVPQIGGMFRGDFRRKATLAEYGFRLPSCMDNRPLRFEE 589

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           W+ +RP T+ VSATPG+WEL +  G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+  E+  
Sbjct: 590 WDMMRPQTVAVSATPGAWELNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRA 649

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            A +G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LV
Sbjct: 650 TAAKGYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALV 709

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV  +VILYAD +T S+
Sbjct: 710 GINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVEGRVILYADQVTGSM 769

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
           Q +I ET RRREKQ+E+N  + I P+SV++ I ++++ +   D     I   A    L+ 
Sbjct: 770 QRSIAETDRRREKQVEYNTANGITPESVRKSIGDILNSVYERDHVLVEIGDGAGSGFLAD 829

Query: 758 K------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                    +A L  L  +M  AA +LNFEEAAR+RDE+KRL+++
Sbjct: 830 DAIAIGHNFEAVLSDLETRMREAAADLNFEEAARLRDEVKRLRAT 874


>gi|298292410|ref|YP_003694349.1| excinuclease ABC subunit B [Starkeya novella DSM 506]
 gi|296928921|gb|ADH89730.1| excinuclease ABC, B subunit [Starkeya novella DSM 506]
          Length = 853

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/697 (64%), Positives = 554/697 (79%), Gaps = 3/697 (0%)

Query: 100 TPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQ 159
           + +V AL+ LI+     +   ++WTPHR          + F  +++DY P+GDQP AI  
Sbjct: 43  SATVAALSALIEGGRAEVDR-QVWTPHRPARPEKSEGGVKFV-LKSDYTPNGDQPKAIDD 100

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           L+      E+ Q+LLGVTGSGKTFTMA VI+ +QRPA+V+APNK LAAQLY EFK+FFP 
Sbjct: 101 LVAAASEGERDQVLLGVTGSGKTFTMANVIQRLQRPALVLAPNKTLAAQLYGEFKSFFPD 160

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           NAVEYFVSYYDYYQPEAYVPRTDT+IEKESSINEQIDRMRHSATRSLLER+D I+V+SVS
Sbjct: 161 NAVEYFVSYYDYYQPEAYVPRTDTFIEKESSINEQIDRMRHSATRSLLERDDVIIVASVS 220

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
           CIYGIGSVE+Y+ M  ++++G+ ++Q+ LL+ LV  QYKR      RGTFRV GD IEIF
Sbjct: 221 CIYGIGSVETYASMTFKIEVGERIDQRALLADLVALQYKRTQGDFGRGTFRVRGDVIEIF 280

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P+H ED AWRVS+FG+++E I EF PLTGQK ++++ +K+YANSHYVTPRPTL  A+  I
Sbjct: 281 PAHYEDRAWRVSLFGDEVESIQEFDPLTGQKSQDLKFVKLYANSHYVTPRPTLIQAIAGI 340

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
           K EL+ RL EL   GRLLEAQRLEQR T+DLEM+E TGSC  IENYSR+LTGR PGEPPP
Sbjct: 341 KNELRHRLDELNAMGRLLEAQRLEQRCTFDLEMMEATGSCAGIENYSRWLTGRLPGEPPP 400

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519
           TLFEY+P+++L+FVDESHVT+PQI  MYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW 
Sbjct: 401 TLFEYVPDNALIFVDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWE 460

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
            +RP T+ VSATPG WE+E+  G+ VEQ+IRPTGLVDP VE+R ARTQV+D+  E+   A
Sbjct: 461 AMRPQTVHVSATPGKWEMERTGGVFVEQVIRPTGLVDPEVEVRPARTQVDDLLGEVRQTA 520

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +G R L+T LTKRMAEDLTEYL+E  IRVRYMHS++ T+ERIEIIRDLRLG FDVL+GI
Sbjct: 521 AKGYRTLVTTLTKRMAEDLTEYLHENGIRVRYMHSDIDTIERIEIIRDLRLGAFDVLIGI 580

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           NLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAARNV+ +V+LYAD+IT S++ 
Sbjct: 581 NLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVVLYADSITGSMER 640

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
           A+ ET RRR KQ+  N +H I P+SV++ I ++++ +   D  T +  + A++ +     
Sbjct: 641 AMAETERRRAKQIAWNTEHGITPESVRKAIGDILNSVYERDHVTVDAGL-AEEGATYGHN 699

Query: 760 GKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             A +  L K+M  AA +L+FE+AAR+RDEIKRL+++
Sbjct: 700 LAAVIADLEKRMRTAAADLDFEQAARLRDEIKRLQAT 736


>gi|182677288|ref|YP_001831434.1| excinuclease ABC, B subunit [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182633171|gb|ACB93945.1| excinuclease ABC, B subunit [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 884

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/697 (64%), Positives = 550/697 (78%), Gaps = 8/697 (1%)

Query: 102 SVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLL 161
           + ++L  L+   +P L+    W PHR    +  S+    F++ +DY P GDQP AI +L+
Sbjct: 110 TAESLQDLLARGDPNLRERPPWQPHRPPRPDK-SEGGHAFEIVSDYTPQGDQPQAIDELV 168

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
            GI ++E+ Q+LLGVTGSGKTFTMA+VI    RPA+++APNK LAAQLY EFK+FFP+NA
Sbjct: 169 TGIKAQERDQVLLGVTGSGKTFTMAQVIARTNRPALILAPNKTLAAQLYGEFKSFFPNNA 228

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
           VEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRH+ATR+LLER+D I+V+SVSCI
Sbjct: 229 VEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCI 288

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
           YGIGSVE+Y+ M   LK G+ ++Q++L+  LV  QYKR      RG FRV GD++E+FP+
Sbjct: 289 YGIGSVETYTAMTFTLKRGERIDQRQLIGDLVALQYKRSAGDFSRGVFRVRGDTLELFPA 348

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
           H ED AWR+  FG++IE I EF PLTG+K++++E +K+YANSHYVTPRPTL  ++K IK+
Sbjct: 349 HYEDRAWRIGFFGDEIESIVEFDPLTGKKVQDLEFVKVYANSHYVTPRPTLLQSIKGIKQ 408

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           ELK RL EL   GRLLEAQRLEQR  +DLEMLE TGSC  IENYSRYLTGR PGEPPPTL
Sbjct: 409 ELKQRLDELNAAGRLLEAQRLEQRTVFDLEMLEATGSCAGIENYSRYLTGRRPGEPPPTL 468

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
           FEY+P+++L+F DESHVT+PQI  MYRGDF RKATLAEYGFRLPSC+DNRPLRFEEW  +
Sbjct: 469 FEYLPDNALVFTDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCLDNRPLRFEEWEAM 528

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           RP T+ VSATPGSWE+EQ  G+ VEQ+IRPTGL+DPPVE+  AR+QV+D+ DE+    +Q
Sbjct: 529 RPQTVHVSATPGSWEMEQTGGVFVEQVIRPTGLIDPPVEVHPARSQVDDLLDELRQVTRQ 588

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G R L+TVLTKRMAEDLTEYL+E  IRVRYMHS++ T+ERIEIIRDLRLG FDVL+GINL
Sbjct: 589 GYRSLVTVLTKRMAEDLTEYLHEAGIRVRYMHSDIDTIERIEIIRDLRLGAFDVLIGINL 648

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           LREGLDIPECG VAILDADKEGFLRS+TSL+QTIGRAARNV  KVILYAD  T S+Q A+
Sbjct: 649 LREGLDIPECGFVAILDADKEGFLRSETSLVQTIGRAARNVEGKVILYADHETGSMQRAM 708

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG- 760
            ETTRRREKQ  +N++H I P ++K  I +++  +  +D    ++S+DA       K G 
Sbjct: 709 AETTRRREKQEAYNREHGITPATIKRGIHDILGSVYEQD----HVSVDAGLAQADLKPGH 764

Query: 761 --KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             K  +  L K+M  AA NL FE AAR RDE++RL++
Sbjct: 765 NFKMTIADLEKRMREAAANLEFEAAARYRDELQRLQA 801


>gi|304319965|ref|YP_003853608.1| putative excinuclease abc subunit b protein [Parvularcula
           bermudensis HTCC2503]
 gi|303298868|gb|ADM08467.1| putative excinuclease abc subunit b protein [Parvularcula
           bermudensis HTCC2503]
          Length = 724

 Score =  944 bits (2440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/693 (64%), Positives = 549/693 (79%), Gaps = 21/693 (3%)

Query: 123 WTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182
           W+PHR  S     +    F++ +DY P+GDQPAAIA+L+ GI ++E+ Q+LLGVTGSGKT
Sbjct: 27  WSPHRP-SRPEKMEGGRAFRVSSDYEPAGDQPAAIAELVAGIAAQEQDQVLLGVTGSGKT 85

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242
           FTMAK+IEA QRPA+++A NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPRTD
Sbjct: 86  FTMAKIIEATQRPALILAHNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTD 145

Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302
           TYIEKES+INEQIDRMRHSATR+LLER+D I+++SVSCIYGIGSVE+Y++M   L++G++
Sbjct: 146 TYIEKESTINEQIDRMRHSATRALLERDDVIIIASVSCIYGIGSVETYTEMTFTLEVGET 205

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
           VE+K+LL+ LV  QYKR D+   RG FR  GD +EIFP+HLEDVAWR+S+FG++IE I+E
Sbjct: 206 VERKQLLADLVALQYKRNDVAFARGAFRARGDIVEIFPAHLEDVAWRISLFGDEIEAITE 265

Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
           F PLTGQKI ++  IK+YANSHYVTPRPTL  A++ IK+EL   L  L +EG+L+EAQRL
Sbjct: 266 FDPLTGQKIADLPRIKMYANSHYVTPRPTLRRAIEGIKKELAATLPILHQEGKLIEAQRL 325

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482
           EQR+ +D+EM+E TGSCQ IENYSRYLTGR PG PPPTLFEY+PE++L+F DESHVT+PQ
Sbjct: 326 EQRVQFDIEMMEATGSCQGIENYSRYLTGRKPGHPPPTLFEYLPENALVFCDESHVTVPQ 385

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542
           I  M+RGDF RK TLAEYGFRLPSCMDNRPL+FEEW+ +RP T+ VSATPG WEL++  G
Sbjct: 386 IGAMFRGDFARKRTLAEYGFRLPSCMDNRPLKFEEWDAMRPQTVHVSATPGPWELDRTGG 445

Query: 543 IIVEQIIRPTGLVDPPVEIRSART----QVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           + VEQ+IRPTGL+DPPVEIR   T    QV+DV DE    A QG R L+T LTK+MAEDL
Sbjct: 446 VFVEQVIRPTGLIDPPVEIRPVTTGQVNQVDDVIDECKKVAAQGGRSLVTTLTKKMAEDL 505

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           TEY++E+ +RVRYMHS+V T+ERIEIIRDLRLG FDVL+GINLLREGLDIPEC  V ILD
Sbjct: 506 TEYMHEQGVRVRYMHSDVDTIERIEIIRDLRLGVFDVLIGINLLREGLDIPECQFVGILD 565

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH 718
           ADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD +T S++ A+ ET RRREKQL HN  H
Sbjct: 566 ADKEGFLRSETSLIQTIGRAARNVDGRVILYADGMTGSMERALQETERRREKQLAHNAAH 625

Query: 719 NINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS----------------LSKKKGKA 762
            I P++VK KI E+ D       A    S  +++L+                +     ++
Sbjct: 626 GITPKTVKAKIAEITDSDDEATKAAAGTSFTSERLTKGATGMGAMREEREAYIPGANMRS 685

Query: 763 HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           HL +L K+M  AA NL FEEAA +RDEI++L++
Sbjct: 686 HLGALEKRMREAAANLEFEEAATLRDEIRKLEA 718


>gi|315497704|ref|YP_004086508.1| excinuclease abc, b subunit [Asticcacaulis excentricus CB 48]
 gi|315415716|gb|ADU12357.1| excinuclease ABC, B subunit [Asticcacaulis excentricus CB 48]
          Length = 723

 Score =  938 bits (2424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/679 (65%), Positives = 542/679 (79%), Gaps = 7/679 (1%)

Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181
           +W+PHR       S+    F + + Y P+GDQPAAIA+L++G ++ E+ Q+LLGVTGSGK
Sbjct: 30  LWSPHRP-DRPQKSEGGRRFVLHSAYEPAGDQPAAIAELVEGANAAERDQVLLGVTGSGK 88

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
           TFTMAKVIE  QRPA+++A NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVPRT
Sbjct: 89  TFTMAKVIEQTQRPALILAHNKTLAAQLYSEFKAFFPENAVEYFVSYYDYYQPEAYVPRT 148

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           DTYIEK+SSINEQIDRMRH+ATR++LER+D IVV+SVSCIYGIGSVE+Y+ M  +LK+G 
Sbjct: 149 DTYIEKDSSINEQIDRMRHAATRAILERDDVIVVASVSCIYGIGSVETYTAMTFELKVGQ 208

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
           ++++ +L + LV  QYKR D    RGTFR  GD IEIFP+H ED AWRVS+FG++IE ++
Sbjct: 209 TIDEAQLRADLVALQYKRNDAAFERGTFRRRGDVIEIFPAHYEDRAWRVSLFGDEIEALT 268

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
           EF PLTG+K  +++ +K+YA SHYVTPRPTL  A+  IK ELK+RL +L  EG+LLEAQR
Sbjct: 269 EFDPLTGKKTADLKDLKVYAASHYVTPRPTLRQAIDRIKAELKLRLDQLHAEGKLLEAQR 328

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
           LEQR T+DLEM+E TG+C  IENYSRYLTGR PGEPPPT FEY+PE++LLFVDESHVT+P
Sbjct: 329 LEQRTTFDLEMMEATGACAGIENYSRYLTGRAPGEPPPTFFEYLPENALLFVDESHVTVP 388

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           QI GMYRGDF RK+ LAEYGFRLPSCMDNRPL+FEEW  +RP T+ VSATPG+WE+EQ  
Sbjct: 389 QIGGMYRGDFARKSVLAEYGFRLPSCMDNRPLKFEEWEAMRPQTVHVSATPGNWEMEQTG 448

Query: 542 GIIVEQIIRPTGLVDPPVEIRSART----QVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           G+  EQ+IRPTGL+DPPVEIR   T    QV+DV  E+   A+ G R L+TVLTK+MAE+
Sbjct: 449 GVFTEQVIRPTGLIDPPVEIRPVSTGGANQVDDVIAEVREVAKNGYRSLVTVLTKKMAEN 508

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTEY++E+ IRVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAIL
Sbjct: 509 LTEYMHEQGIRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAIL 568

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           DADKEGFLRS+TSLIQTIGRAARNV  +VILYAD +T S++ A+ ET+RRREKQ+ +N +
Sbjct: 569 DADKEGFLRSETSLIQTIGRAARNVEGRVILYADKMTGSMERALAETSRRREKQMAYNAE 628

Query: 718 HNINPQSVKEKIMEVID-PILLEDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAA 775
           H I P+SVK  I +++D P    D     + + A+          +A LK L  +M  AA
Sbjct: 629 HGITPESVKRGISDILDSPYEKADRVQVPVGVAAKDSKPFLGSNFQATLKDLETRMREAA 688

Query: 776 DNLNFEEAARIRDEIKRLK 794
            NL FEEAAR+RDEIKRLK
Sbjct: 689 GNLEFEEAARMRDEIKRLK 707


>gi|300023982|ref|YP_003756593.1| excinuclease ABC subunit B [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525803|gb|ADJ24272.1| excinuclease ABC, B subunit [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 901

 Score =  936 bits (2419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/689 (62%), Positives = 545/689 (79%), Gaps = 3/689 (0%)

Query: 110 IQSDNPLLKNG-KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           + + +P++  G  ++ PHR          I F ++++DY P GDQP AI++L+ G+   E
Sbjct: 33  LMASHPIVSGGMPMFMPHRPERPEKSEGGIRF-KIESDYEPRGDQPQAISELVDGVAKHE 91

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
             Q+LLGVTGSGKTFTMA VI+A QRPA+++APNK LAAQLY EFK+FFP NAVEYFVSY
Sbjct: 92  HNQVLLGVTGSGKTFTMAHVIQATQRPALILAPNKTLAAQLYGEFKSFFPDNAVEYFVSY 151

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPRTDTYIEKE+SINEQIDRMRH+ATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 152 YDYYQPEAYVPRTDTYIEKEASINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVE 211

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y+ M   ++ G+ + + +LL+ LV   Y+R D   +RG+FR  GD++E+FP+HLED AW
Sbjct: 212 TYTAMTFTVRAGEQISRDQLLADLVALHYRRNDQNFVRGSFRARGDTVEVFPAHLEDRAW 271

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R S+FG+++E I EF PLTG K   +  +K+YANSHYVTP+PTL  A+K IK ELK RL 
Sbjct: 272 RFSLFGDEVESIVEFDPLTGAKTDELALVKLYANSHYVTPKPTLQQAIKSIKIELKQRLD 331

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           EL   G+LLEAQRLEQR T+D+EM+E TGSC  IENYSRYLTGRNPG+PPPTLFEY+P++
Sbjct: 332 ELYDAGKLLEAQRLEQRTTFDMEMMEATGSCAGIENYSRYLTGRNPGDPPPTLFEYLPDN 391

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +L+F DESHVT+PQI GM+RGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP ++ V
Sbjct: 392 ALVFADESHVTVPQIGGMFRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQSVFV 451

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATP SWE+EQ  G   EQ+IRPTGL+DP VEIRSA+TQV+D+ DE+   A++G R L+T
Sbjct: 452 SATPASWEMEQTGGAFAEQVIRPTGLIDPVVEIRSAKTQVDDLLDEVRQVARKGYRTLVT 511

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VLTKRMAEDLTEY++E  +RVRYMHS+++TLERIEIIRDLRLG FDVL+GINLLREGLDI
Sbjct: 512 VLTKRMAEDLTEYMHESGVRVRYMHSDIETLERIEIIRDLRLGAFDVLIGINLLREGLDI 571

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PEC LVAILDADKEGFLRS+TSL+QTIGRAARNV+ KVILYAD +T S+  AI ET RRR
Sbjct: 572 PECALVAILDADKEGFLRSETSLVQTIGRAARNVDGKVILYADQMTGSMDRAIAETNRRR 631

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI-DAQQLSLSKKKGKAHLKSL 767
           EKQ+  N+ + I P+S+K  I +V+  +  +D  T +  + D   +       +A +  +
Sbjct: 632 EKQMAWNEANGITPESIKRNIHDVLQSVYEQDHVTVDAGLADGDAVQSLGHNLQAVVADM 691

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            ++M  AA +L FE AAR+RDEIKRL+ +
Sbjct: 692 ERRMKEAAADLEFETAARLRDEIKRLRET 720


>gi|197104262|ref|YP_002129639.1| excinuclease ABC subunit B protein [Phenylobacterium zucineum HLK1]
 gi|196477682|gb|ACG77210.1| excinuclease ABC subunit B protein [Phenylobacterium zucineum HLK1]
          Length = 747

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/677 (65%), Positives = 538/677 (79%), Gaps = 5/677 (0%)

Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181
           +W PHR       S+    F++ +DY P+GDQP AI +L++G+  RE  Q+LLGVTGSGK
Sbjct: 27  LWKPHRP-ERPEKSEGGRRFKLVSDYQPAGDQPQAIRELVEGLEGREHDQVLLGVTGSGK 85

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
           TFTMAKVIE  QRPA+++APNK LAAQLYSEF++FFP NAVE+FVSYYDYYQPEAYVPRT
Sbjct: 86  TFTMAKVIEETQRPALILAPNKTLAAQLYSEFRSFFPENAVEFFVSYYDYYQPEAYVPRT 145

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           DTYIEK+SSINEQIDRMRHSATR++LER+D IVV+SVSCIYGIGSVE+YS M  QLK GD
Sbjct: 146 DTYIEKDSSINEQIDRMRHSATRAILERDDVIVVASVSCIYGIGSVETYSAMTFQLKPGD 205

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
            V++K+L+  LV  QYKR D    RGTFR  GD+IEIFP+H ED AWR+S+FG+++E I 
Sbjct: 206 RVDEKKLMGDLVALQYKRNDQAFERGTFRRRGDTIEIFPAHYEDRAWRISLFGDEVEAIV 265

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
           EF PLTG+K   ++ +KIYANSHYVTPRPTL  A+  IK ELK RL  L   G+LLEAQR
Sbjct: 266 EFDPLTGKKTAELQGVKIYANSHYVTPRPTLRQAINQIKVELKERLDWLVANGKLLEAQR 325

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
           LEQR T+DLEM+E TGSC  IENYSRYLTGR PGEPPPT FEYIP+++LLFVDESH T+P
Sbjct: 326 LEQRTTFDLEMIEATGSCAGIENYSRYLTGRRPGEPPPTFFEYIPDNALLFVDESHQTVP 385

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           QI  MYRGD+ RK TLAE+GFRLPSC+DNRPL+FEEW+ +RP T+ VSATPG WE+E+  
Sbjct: 386 QIGAMYRGDYRRKWTLAEFGFRLPSCIDNRPLKFEEWDAMRPDTVHVSATPGPWEMEKTG 445

Query: 542 GIIVEQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           G+  EQ+IRPTGL+DPPVE+R       +QV+DV DE+   A +G R L+TVLTK+MAED
Sbjct: 446 GVFAEQVIRPTGLIDPPVEVRPVSKDGFSQVDDVIDEVRQTAARGYRSLITVLTKKMAED 505

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTE+++E+ +RVRYMHS+V TLERIEIIRDLRLG FD+LVGINLLREGLDIPECGLVAIL
Sbjct: 506 LTEFMHEQGLRVRYMHSDVDTLERIEIIRDLRLGAFDILVGINLLREGLDIPECGLVAIL 565

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           DADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD++T S++ A+ ET RRREKQ+ +N +
Sbjct: 566 DADKEGFLRSETSLIQTIGRAARNVDGRVILYADSVTGSMERAMAETQRRREKQMAYNLE 625

Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
           H I P+SVK +I +++     +D  T  + +            K  L+ L  +M  AA N
Sbjct: 626 HGITPESVKSQIKDILASPYEKDRVTVPVGVAEDGKPFLGDNFKTTLRDLENRMKEAAAN 685

Query: 778 LNFEEAARIRDEIKRLK 794
           L FEEAAR+RDEIKRLK
Sbjct: 686 LEFEEAARLRDEIKRLK 702


>gi|312116115|ref|YP_004013711.1| excinuclease ABC subunit B [Rhodomicrobium vannielii ATCC 17100]
 gi|311221244|gb|ADP72612.1| excinuclease ABC, B subunit [Rhodomicrobium vannielii ATCC 17100]
          Length = 976

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/686 (63%), Positives = 552/686 (80%), Gaps = 4/686 (0%)

Query: 112 SDNPLL--KNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169
            D+PLL  +N  ++ PHR       S+    F +++D+ P GDQPAAI +L++G+   E+
Sbjct: 85  GDHPLLTGENMPMFMPHRP-PRPEKSEGGKPFIIKSDFEPCGDQPAAIRELVEGVTKLER 143

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
            Q+LLGVTGSGKTFTMAKVIE  QRPA+++APNK LAAQLY EFK+FFP NAVEYFVSYY
Sbjct: 144 EQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKTLAAQLYGEFKSFFPDNAVEYFVSYY 203

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
           DYYQPEAY+PR+DTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+SVSCIYGIGSVE+
Sbjct: 204 DYYQPEAYIPRSDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVET 263

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           YS M   +++GD ++Q+++L+ LV  QYKR +I   RG FRV GD+IEIFP+H ED AWR
Sbjct: 264 YSAMTFTIQVGDRLQQRQILADLVAIQYKRNNISFARGDFRVRGDTIEIFPAHQEDRAWR 323

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           +SMFG+++E I+EF PLTG+K +++  +KIYANSHYVTP+PTL+ A++ +++EL+ +L  
Sbjct: 324 ISMFGDEVESIAEFDPLTGEKTQDLALVKIYANSHYVTPKPTLHQAIRGMQQELQEQLQR 383

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
               GRLLEAQRLEQR  +D+EM+E TGSC  IENYSR+LTGR PGEPPPTLFEY+P+++
Sbjct: 384 FNATGRLLEAQRLEQRTQFDIEMIEATGSCNGIENYSRWLTGRAPGEPPPTLFEYLPDNA 443

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           L+F DESHVT+PQI GM++GDF RK+TLAE+GFRLPSC+DNRPLRFEEW+ +RP T  VS
Sbjct: 444 LVFADESHVTVPQIGGMFKGDFRRKSTLAEFGFRLPSCIDNRPLRFEEWDAMRPQTTFVS 503

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
           ATPG WE+EQ  G+ VEQ+IRPTGL+DPPVEIR  +TQV+D+ DE      QG R+L+T 
Sbjct: 504 ATPGKWEMEQTGGVFVEQVIRPTGLIDPPVEIRPVKTQVDDLIDECRKTIAQGYRVLVTT 563

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           LTKRM+EDLTEY +E+ ++VRYMHS+V TLERIEIIRDLRLG FDVL+GINLLREGLDIP
Sbjct: 564 LTKRMSEDLTEYAHEQGLKVRYMHSDVDTLERIEIIRDLRLGAFDVLIGINLLREGLDIP 623

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           E  LVAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD IT S++ AI ET RRRE
Sbjct: 624 EVALVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADNITGSMERAIAETNRRRE 683

Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI-DAQQLSLSKKKGKAHLKSLR 768
           KQ+E+N +H I PQSV++ I +++  +   D  T +    +  Q  L     +A + +L 
Sbjct: 684 KQVEYNTEHGITPQSVRKNIGDILASVYERDHVTVDAGFAEGAQTPLVGHNLQAVIANLE 743

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLK 794
           K+M  AA NL FEEAAR+RDE+KRL+
Sbjct: 744 KRMREAASNLEFEEAARLRDEVKRLR 769


>gi|167648209|ref|YP_001685872.1| excinuclease ABC subunit B [Caulobacter sp. K31]
 gi|167350639|gb|ABZ73374.1| excinuclease ABC, B subunit [Caulobacter sp. K31]
          Length = 761

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/679 (65%), Positives = 542/679 (79%), Gaps = 7/679 (1%)

Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181
           +W PHR  +    S+    F++ +DY P+GDQP AIA+L+ G+  +E  Q+LLGVTGSGK
Sbjct: 41  LWQPHRP-ARPEKSEGGRRFKLVSDYEPAGDQPTAIAELVAGLEGKENDQVLLGVTGSGK 99

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
           TFTMAKVIEA QRPA+++APNK LAAQLYSEFK+FFPHNAVEYFVSYYDYYQPEAYVPRT
Sbjct: 100 TFTMAKVIEATQRPALILAPNKTLAAQLYSEFKSFFPHNAVEYFVSYYDYYQPEAYVPRT 159

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           DTYIEK+SSINEQIDRMRHSATR++LER+D IVV+SVSCIYGIGSVE+Y+ M   L++G 
Sbjct: 160 DTYIEKDSSINEQIDRMRHSATRAILERDDVIVVASVSCIYGIGSVETYTAMTFTLEVGQ 219

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
           ++ +K++++ LV QQYKR D    RGTFR  GD+IEIFP+H ED AWR+S+FG+++E IS
Sbjct: 220 TINEKQMMADLVAQQYKRNDAAFERGTFRRRGDTIEIFPAHYEDRAWRISLFGDEVESIS 279

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
           EF PLTG+K  ++ETIK+YANSH+VTPRPTL  A+  I++ELK RL  + + G+LLEAQR
Sbjct: 280 EFDPLTGKKTGDLETIKVYANSHHVTPRPTLRQAIISIRQELKERLAWMYENGKLLEAQR 339

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
           LEQR  +DLEM+ETTGSC  IENYSRYL+GR  GEPPPT FEYIP+++LLF DESH T+P
Sbjct: 340 LEQRTNFDLEMIETTGSCAGIENYSRYLSGRKAGEPPPTFFEYIPDNALLFTDESHQTVP 399

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           QI  MY+GD  RK TLAEYGFRLPS +DNRPL+FEEW+ +RP ++ VSATP  WELE+  
Sbjct: 400 QIGAMYKGDRSRKWTLAEYGFRLPSALDNRPLKFEEWDAMRPQSVHVSATPAKWELERAG 459

Query: 542 GIIVEQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           G+  EQ+IRPTGL+DPPVE+R       +QV+DV DE+  A  +G R L+TVLTK+MAED
Sbjct: 460 GVFAEQVIRPTGLIDPPVEVRPVSKDGASQVDDVIDEVRQAKAKGYRTLVTVLTKKMAED 519

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTEY+ E+ I VRYMHS+V T+ERIEIIRDLRLG FDVLVGINLLREGLDIPECGLVAIL
Sbjct: 520 LTEYMNEQGIAVRYMHSDVDTMERIEIIRDLRLGHFDVLVGINLLREGLDIPECGLVAIL 579

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           DADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD IT S++ A+ ET+RRREKQ ++N +
Sbjct: 580 DADKEGFLRSETSLIQTIGRAARNVDGKVILYADRITGSMERAMGETSRRREKQHQYNLE 639

Query: 718 HNINPQSVKEKIMEVID-PILLEDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAA 775
           H I P+SVK  I ++++ P    D  T  I   A+     S    KA LK +  +M  AA
Sbjct: 640 HGITPESVKRDIKDILNSPYERGDRVTVPIGGVAETGKPFSGDNFKAALKDMEARMREAA 699

Query: 776 DNLNFEEAARIRDEIKRLK 794
            NL FE AAR+RDEIKR+K
Sbjct: 700 ANLEFETAARLRDEIKRMK 718


>gi|85374647|ref|YP_458709.1| excinuclease ABC subunit B [Erythrobacter litoralis HTCC2594]
 gi|84787730|gb|ABC63912.1| excinuclease ABC subunit B [Erythrobacter litoralis HTCC2594]
          Length = 727

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/693 (64%), Positives = 550/693 (79%), Gaps = 6/693 (0%)

Query: 113 DNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQL 172
           D P  + G+ +TPHR  +    S     F++ ++Y P+GDQP AIA+L++     EK Q 
Sbjct: 11  DEP--ETGEEFTPHRP-ARPEKSMPGKRFELVSEYEPAGDQPTAIAELVESAREGEKTQT 67

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           LLGVTGSGKTFTMAKVIE +QRPA+V+APNKILAAQLY EFK+FFPHNAVEYFVSYYDYY
Sbjct: 68  LLGVTGSGKTFTMAKVIETLQRPALVLAPNKILAAQLYGEFKSFFPHNAVEYFVSYYDYY 127

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           QPEAYVPR+DTYIEKESS+NE IDRMRHSATR+LLER+D I+V+SVSC+YGIGSVE+YS 
Sbjct: 128 QPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVIIVASVSCLYGIGSVETYSA 187

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
           MI  +K  ++V+Q+EL+  LV  QYKR D    RGTFRV GD++EIFPSH ED AWRVS 
Sbjct: 188 MIFDIKKDETVDQRELIRKLVALQYKRNDAAFQRGTFRVRGDNLEIFPSHYEDRAWRVSF 247

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG+DIEEI+EF PLTG+K  +++++++YANSHYVTP PT+  A + IK EL+ RL EL  
Sbjct: 248 FGDDIEEINEFDPLTGEKGASLDSVRVYANSHYVTPGPTMKQASEAIKFELQERLKELHA 307

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           EGRLLEAQRLEQR  +DLEM+  TGSC  IENYSR+LTGR PGEPPPTLFEY+PE++LLF
Sbjct: 308 EGRLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLPENALLF 367

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           VDESH T+PQI  M RGD  RK TLAEYGFRLPSC+DNRPLRF EW+ +RP T  VSATP
Sbjct: 368 VDESHQTVPQIGAMARGDHRRKLTLAEYGFRLPSCIDNRPLRFNEWDAMRPQTFCVSATP 427

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
           G+WE+EQ  G+  EQ+IRPTGL+DPPVEIR    QV+D  +E N  A++G R L+T LTK
Sbjct: 428 GNWEMEQTGGVFAEQVIRPTGLIDPPVEIRPVEDQVQDCINECNETAKKGYRTLVTTLTK 487

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RMAEDLTE+++E  ++VRYMHS+V+TLERIE+IRDLRLG +DVL+GINLLREGLDIPECG
Sbjct: 488 RMAEDLTEFMHEAGVKVRYMHSDVETLERIELIRDLRLGVYDVLIGINLLREGLDIPECG 547

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           LV ILDADKEGFLRS+TSL+QTIGRAARNV+ KVILYAD IT S++ A+ ET RRREKQ 
Sbjct: 548 LVCILDADKEGFLRSETSLVQTIGRAARNVDGKVILYADRITGSMERAMAETERRREKQR 607

Query: 713 EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMH 772
            +N++H I PQ++K +I +++     +D  T +   D ++ +L     +A+++ L K+M 
Sbjct: 608 AYNEEHGITPQTIKRQIADIVAHTASQDGVTVDTG-DDERNNLVGHNLRAYIEDLEKRMR 666

Query: 773 LAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
            AA +L FEEA R+RDEI+RL++     GL DS
Sbjct: 667 EAAADLEFEEAGRLRDEIRRLENDEL--GLSDS 697


>gi|146278911|ref|YP_001169070.1| excinuclease ABC subunit B [Rhodobacter sphaeroides ATCC 17025]
 gi|145557152|gb|ABP71765.1| Excinuclease ABC subunit B [Rhodobacter sphaeroides ATCC 17025]
          Length = 726

 Score =  930 bits (2404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/680 (63%), Positives = 537/680 (78%), Gaps = 10/680 (1%)

Query: 125 PHRSWSINNHSKDITF---------FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
           PH + ++  H  ++           F+M+T + P+GDQP AIA+L  G+ + E+ Q+LLG
Sbjct: 2   PHNNMNMPMHRPEVLTRPKLEGGRRFEMKTPFKPAGDQPTAIAELASGVRAGEQNQVLLG 61

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GKTFTMAK+IE  QRPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPE
Sbjct: 62  ATGTGKTFTMAKIIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPE 121

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AYVPR+DTYIEKES INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+YS M  
Sbjct: 122 AYVPRSDTYIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYSAMTQ 181

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L +G S +Q+++++ LV QQY+R D G  RG+FRV GDS+E++P+HLED AWR S FG 
Sbjct: 182 DLVVGQSYDQRQVIAELVAQQYRRNDQGFQRGSFRVRGDSLEVWPAHLEDRAWRFSFFGE 241

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           ++E + EF PLTG K  + + I+IYANSHYVTPRPT+  A++ IK+EL+ RL +L  EG+
Sbjct: 242 ELESVVEFDPLTGAKTDSFKQIRIYANSHYVTPRPTMQQAVQGIKKELRQRLDQLVAEGK 301

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRLEQR  +D+EMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DE
Sbjct: 302 LLEAQRLEQRTNFDIEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADE 361

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVT+PQI GMYRGD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +W
Sbjct: 362 SHVTVPQIGGMYRGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPSAW 421

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           ELEQ  G+  EQ+IRPTGL+DP VEIR    QV+D+ DEI   A  GLR L+TVLTKRMA
Sbjct: 422 ELEQAGGVFAEQVIRPTGLLDPMVEIRPVEMQVDDLLDEIRKVAAAGLRTLVTVLTKRMA 481

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLTEYL+E+ IRVRYMHS++ T+ERIEI+RDLRLG FDVLVGINLLREGLDIPECGLVA
Sbjct: 482 EDLTEYLHEQGIRVRYMHSDIDTIERIEILRDLRLGAFDVLVGINLLREGLDIPECGLVA 541

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS+TSLIQTIGRAARN   +VI+YAD IT S++ A+ ET RRREKQ+ +N
Sbjct: 542 ILDADKEGFLRSETSLIQTIGRAARNAEGRVIMYADRITGSMERALRETERRREKQIAYN 601

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAA 775
           + H I PQ+VK+ + +V+  +   D     ++   ++  +      AHL  LR  M  AA
Sbjct: 602 EAHGITPQTVKKNVEDVLAGLWQGDTDMNRVTAKVEKPMVGSNLA-AHLDGLRTAMRKAA 660

Query: 776 DNLNFEEAARIRDEIKRLKS 795
           +NL FEEAAR+RDEIKRL++
Sbjct: 661 ENLEFEEAARLRDEIKRLEA 680


>gi|302382065|ref|YP_003817888.1| excinuclease ABC subunit B [Brevundimonas subvibrioides ATCC 15264]
 gi|302192693|gb|ADL00265.1| excinuclease ABC, B subunit [Brevundimonas subvibrioides ATCC
           15264]
          Length = 791

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/684 (65%), Positives = 543/684 (79%), Gaps = 17/684 (2%)

Query: 123 WTPHRSWSINNHSKDITF-----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVT 177
           WTPHR    +  +K +T      F+++T Y P+GDQPAAIA+L+      ++ Q+LLGVT
Sbjct: 70  WTPHRP---DRPAKSLTGRQKHRFRLETSYTPAGDQPAAIAELVSQASQGDRDQVLLGVT 126

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           GSGKTFTMAKVIEA QRPA+++APNK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY
Sbjct: 127 GSGKTFTMAKVIEATQRPALILAPNKTLAAQLYSEFKAFFPDNAVEYFVSYYDYYQPEAY 186

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
           VPRTDTYIEK+SSINEQIDRMRHSATRS+LER+D IVV+SVSCIYGIGSVE+Y+ M   L
Sbjct: 187 VPRTDTYIEKDSSINEQIDRMRHSATRSILERDDVIVVASVSCIYGIGSVETYTAMTFDL 246

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           K+GD +++ +L + L+  QYKR D+   RG FR  GD++EIFP HL+D AWRVS+FG++I
Sbjct: 247 KVGDQIDESKLRADLIALQYKRNDVAFERGMFRKRGDTVEIFPVHLDDRAWRVSLFGDEI 306

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           E I+EF PLTG+K   ++ + +YA SHYVTPRPTLN A+  IK ELK  L  + + G+LL
Sbjct: 307 ESIAEFDPLTGKKTAELKEVTVYAASHYVTPRPTLNQALGGIKAELKETLDWMIENGKLL 366

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESH 477
           EAQRLEQR+ +DLEM+E TGSC  IENYSR+LTGR PGEPPPT FEYIP+++LLFVDESH
Sbjct: 367 EAQRLEQRVRFDLEMMEATGSCAGIENYSRWLTGRAPGEPPPTFFEYIPDNALLFVDESH 426

Query: 478 VTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537
           VTI QI+GM+RGD+ RK+TLAEYGFRLPSC+DNRPL+F+EW  +RP T+ VSATPG WE+
Sbjct: 427 VTIGQINGMFRGDYRRKSTLAEYGFRLPSCIDNRPLKFDEWEAMRPQTVHVSATPGPWEM 486

Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
           EQ  G+ VEQ+IRPTGL+DPPVEIR    + R QV+DV DE+   A+ G R L+TVLTK+
Sbjct: 487 EQTGGVFVEQVIRPTGLIDPPVEIRPVSGTTRNQVDDVIDEVKAVARAGYRSLVTVLTKK 546

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAEDLTEY++E+ +RVRYMHS+V T+ERIEIIRDLRLG FDVL+GINLLREGLDIPECGL
Sbjct: 547 MAEDLTEYMHEQGVRVRYMHSDVDTMERIEIIRDLRLGTFDVLIGINLLREGLDIPECGL 606

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           VAILDADKEGFLRS+TSLIQTIGRAARNV+  VILYAD +T S++ A+ ET RRRE+Q  
Sbjct: 607 VAILDADKEGFLRSETSLIQTIGRAARNVDGHVILYADRVTGSMERAMAETNRRRERQEA 666

Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAA---TTNISIDAQQLSLSKKKGKAHLKSLRKQ 770
           +N +H I P+SVK  I E+++    +D     TT +  DA+         +A LK L  +
Sbjct: 667 YNAEHGITPESVKRDIKEILNSPYEKDRVLIPTTGVKEDAR--PFIGNNFQATLKDLEGK 724

Query: 771 MHLAADNLNFEEAARIRDEIKRLK 794
           M  AA NL FEEA R+RDEIK+LK
Sbjct: 725 MREAASNLEFEEAGRLRDEIKKLK 748


>gi|254466362|ref|ZP_05079773.1| excinuclease ABC, B subunit [Rhodobacterales bacterium Y4I]
 gi|206687270|gb|EDZ47752.1| excinuclease ABC, B subunit [Rhodobacterales bacterium Y4I]
          Length = 732

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/655 (65%), Positives = 529/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F M T + P+GDQPAAI +L +G+   E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 30  FVMNTTFDPAGDQPAAIKELSQGVMEGERNQVLLGATGTGKTFTMAKVIEETQRPAIILA 89

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP N+VEYFVS+YDYYQPEAYVPR+DTYIEKES INEQIDRMRH
Sbjct: 90  PNKTLAAQLYGEFKGFFPENSVEYFVSFYDYYQPEAYVPRSDTYIEKESQINEQIDRMRH 149

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER+D I+++SVSCIYGIGSVE+YS M   LK G+  +Q+++++ LV QQYKR 
Sbjct: 150 SATRSLLERDDVIIIASVSCIYGIGSVETYSAMTQDLKAGEMYDQRQIMADLVAQQYKRN 209

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GD++EIFP+HLED AW++S FG ++E+I+EF PLTG+K  + + I++Y
Sbjct: 210 DQAFQRGSFRVRGDTLEIFPAHLEDRAWKLSFFGEELEQITEFDPLTGEKTGSFDQIRVY 269

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PTLN A+  IK+ELKMRL +L  EG+LLEAQRLEQR  +D+EMLE TG C 
Sbjct: 270 ANSHYVTPKPTLNQAVISIKQELKMRLDQLVGEGKLLEAQRLEQRTNFDIEMLEATGHCN 329

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRGD  RK TLAE+
Sbjct: 330 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRGDHRRKFTLAEH 389

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ  G+  EQ+IRPTGL+DP VE
Sbjct: 390 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFTEQVIRPTGLLDPEVE 449

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DE+      G R L+T LTKRMAEDLTEYL+E+ I+VRYMHS++ TLE
Sbjct: 450 IRPVSMQVDDLLDEVRKVTADGFRTLVTTLTKRMAEDLTEYLHEQGIKVRYMHSDIDTLE 509

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 510 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 569

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S++ A+DET RRREKQ+ +N +H I P++VK+ + +V+  +   D
Sbjct: 570 NADGRVIMYADKITGSMERALDETNRRREKQIAYNLEHGITPETVKKNVEDVLAGLYEGD 629

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++    +  +     +AHL  LR  M  AA+NL FEEAAR+RDEIKRL++
Sbjct: 630 VDMNRVTAQIGK-PMHGANLEAHLNGLRDDMRKAAENLEFEEAARLRDEIKRLEA 683


>gi|295690822|ref|YP_003594515.1| excinuclease ABC, subunit B [Caulobacter segnis ATCC 21756]
 gi|295432725|gb|ADG11897.1| excinuclease ABC, B subunit [Caulobacter segnis ATCC 21756]
          Length = 756

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/679 (65%), Positives = 542/679 (79%), Gaps = 7/679 (1%)

Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181
           +WTPHR  +  + ++    F++ ++Y P+GDQP AIA+L++GI S ++ Q+LLGVTGSGK
Sbjct: 36  LWTPHRP-ARPDKTEGGRKFKLVSEYQPAGDQPTAIAELVQGIESGDQDQVLLGVTGSGK 94

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
           TFTMAKVIEA QRPA+++APNK LAAQLYSE K+FFP NAVEYFVSYYDYYQPEAYVPRT
Sbjct: 95  TFTMAKVIEATQRPALILAPNKTLAAQLYSEMKSFFPENAVEYFVSYYDYYQPEAYVPRT 154

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           DTYIEK+SSINEQIDRMRHSATR++LER+D IVV+SVSCIYGIGSVE+Y+ M   L++G 
Sbjct: 155 DTYIEKDSSINEQIDRMRHSATRAILERDDVIVVASVSCIYGIGSVETYTAMTFTLEVGQ 214

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
            V++K+L++ LV QQYKR D    RG FR  GD+IEIFP+H ED AWRV+MFG+++E +S
Sbjct: 215 KVDEKQLIADLVAQQYKRNDQAFERGAFRRRGDTIEIFPAHYEDRAWRVTMFGDEVEALS 274

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
           EF  LTG+K  ++E IK+YANSH+VTPRPTL  A+  I++ELK RL  L   G+LLEAQR
Sbjct: 275 EFDTLTGKKTADLEMIKVYANSHHVTPRPTLRQAIIAIRQELKERLEWLTANGKLLEAQR 334

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
           LEQR T+DLEM+ETTGSC  IENYSRYL+GR PGEPPPT FEYIP+++LLF DESH T+P
Sbjct: 335 LEQRTTFDLEMIETTGSCAGIENYSRYLSGRKPGEPPPTFFEYIPDNALLFTDESHQTVP 394

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           QI  MY+GD +RK TLAEYGFRLPS +DNRPL+FEEW+ +RP ++ VSATP +WE+E+  
Sbjct: 395 QIGAMYKGDRNRKWTLAEYGFRLPSALDNRPLKFEEWDAMRPQSVHVSATPANWEMERAG 454

Query: 542 GIIVEQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           G+  EQ+IRPTGL+DPPVE+R       +QV+DV DEI    Q+G R L+TVLTK+MAED
Sbjct: 455 GVFAEQVIRPTGLIDPPVEVRPVSKDGASQVDDVVDEIRQTIQKGYRTLVTVLTKKMAED 514

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTEYL E+ IRVRYMHS+V TLERIEIIRDLRLG FDVLVGINLLREGLDIPECGLVAIL
Sbjct: 515 LTEYLNEQGIRVRYMHSDVDTLERIEIIRDLRLGHFDVLVGINLLREGLDIPECGLVAIL 574

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           DADKEGFLRS+TSLIQTIGRAARN++ KVILYAD IT S++ A+ ET RRREKQ  +N +
Sbjct: 575 DADKEGFLRSETSLIQTIGRAARNIDGKVILYADRITGSMERAMAETARRREKQHAYNLE 634

Query: 718 HNINPQSVKEKIMEVID-PILLEDAATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAA 775
           H I P+SVK  I ++++ P    D     + + +      S    KA LK L  +M  AA
Sbjct: 635 HGITPESVKRDIKDILNSPYERGDRVLVPMGMSETDDRPFSGDNFKAALKDLEAKMREAA 694

Query: 776 DNLNFEEAARIRDEIKRLK 794
            NL FE AAR+RDEIKR+K
Sbjct: 695 ANLEFETAARLRDEIKRMK 713


>gi|259415323|ref|ZP_05739244.1| excinuclease ABC, B subunit [Silicibacter sp. TrichCH4B]
 gi|259348553|gb|EEW60315.1| excinuclease ABC, B subunit [Silicibacter sp. TrichCH4B]
          Length = 788

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/655 (65%), Positives = 529/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F MQT + P+GDQP AIA+L +G+   E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 88  FVMQTAFSPAGDQPTAIAELSQGVFDGERDQVLLGATGTGKTFTMAKVIEETQRPAIILA 147

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVS+YDYYQPEAYVPR+DTYIEKES INEQIDRMRH
Sbjct: 148 PNKTLAAQLYGEFKGFFPDNAVEYFVSFYDYYQPEAYVPRSDTYIEKESQINEQIDRMRH 207

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+++SVSCIYGIGSVE+YS M   L +G   +Q+++++ LV QQYKR 
Sbjct: 208 SATRALLERDDVIIIASVSCIYGIGSVETYSAMTQDLNVGQDYDQRQIMADLVAQQYKRN 267

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GD++EIFP+HLED AW++S FG ++E I+EF PLTG++  + E I++Y
Sbjct: 268 DQAFQRGSFRVRGDTLEIFPAHLEDRAWKLSFFGEELEAITEFDPLTGERTGSFEKIRVY 327

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PTLN A+  IK EL+ RL  L  EG+LLEAQRLEQR  +D+EMLE TG C 
Sbjct: 328 ANSHYVTPKPTLNQAVISIKNELRQRLDNLVSEGKLLEAQRLEQRTNFDIEMLEATGHCN 387

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD  RK TLAE+
Sbjct: 388 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDHRRKMTLAEH 447

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ  G+  EQ+IRPTGL+DP VE
Sbjct: 448 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMEQAGGVFAEQVIRPTGLLDPEVE 507

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DEI     +G R L TVLTKRMAEDLTEYL+E+ I+VRYMHS++ TLE
Sbjct: 508 IRPVGMQVDDLLDEIRAVTARGFRTLATVLTKRMAEDLTEYLHEQGIKVRYMHSDIDTLE 567

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 568 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 627

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + KVI+YAD IT S++ AI ET RRREKQ+ +N++H I P++VK+ + +V+  +   D
Sbjct: 628 NADGKVIMYADRITGSMERAIAETNRRREKQIAYNEEHGITPETVKKNVDDVLAGLYQGD 687

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              + ++    +  L     +AHL  LR+QM  AA+NL FEEAAR+RDE+KRL++
Sbjct: 688 TDMSRVTATIDK-PLHGANFEAHLDGLREQMRKAAENLEFEEAARLRDEVKRLEA 741


>gi|154252735|ref|YP_001413559.1| excinuclease ABC subunit B [Parvibaculum lavamentivorans DS-1]
 gi|154156685|gb|ABS63902.1| excinuclease ABC, B subunit [Parvibaculum lavamentivorans DS-1]
          Length = 771

 Score =  925 bits (2391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/680 (63%), Positives = 546/680 (80%), Gaps = 7/680 (1%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTG 178
           N  ++ PHR       S+      + ++Y P+GDQP AIA+L++ ++  E+ Q+LLGVTG
Sbjct: 54  NWPLFEPHRP-ERPEKSEGGRRLNLVSEYQPAGDQPTAIAELVEAVNKGERDQVLLGVTG 112

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           SGKT+TMA+VIE  QRPA+++APNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYV
Sbjct: 113 SGKTYTMAQVIERTQRPALILAPNKTLAAQLYGEFKSFFPENAVEYFVSYYDYYQPEAYV 172

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLK 298
           PRTDTYIEKESSINEQIDRMRHSATR+LLER+D ++V+SVSCIYGIGSVE+YS M   +K
Sbjct: 173 PRTDTYIEKESSINEQIDRMRHSATRALLERDDVVIVASVSCIYGIGSVETYSAMTFSVK 232

Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358
           +G+ +++K+L++ LV  QYKR D    RGTFRV GD++E+FP+H ED AWR+ MFG++IE
Sbjct: 233 VGERLDRKQLIADLVALQYKRNDQAFGRGTFRVRGDTVEVFPAHYEDRAWRIGMFGDEIE 292

Query: 359 EISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE 418
           EISEF PLTG K      +K+YANSHYVTPRP L+ A++ IK +L++RL EL+ +G+LLE
Sbjct: 293 EISEFDPLTGHKTDKFTEVKLYANSHYVTPRPALSQAIEEIKHDLQVRLQELKGQGKLLE 352

Query: 419 AQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHV 478
           AQRLEQR  +D+EM+E TGSC  IENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHV
Sbjct: 353 AQRLEQRTQFDIEMMEATGSCAGIENYSRYLTGRKPGEPPPTLFEYLPDNALVFADESHV 412

Query: 479 TIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
           TIPQI GM+RGD+ RK+TLAEYGFRLPSC+DNRP+RFEEWN +RP ++ VSATPG WE++
Sbjct: 413 TIPQIGGMFRGDYKRKSTLAEYGFRLPSCVDNRPMRFEEWNAMRPQSVFVSATPGPWEMD 472

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           Q  G+  EQ+IRPTGL+DPP  IR   TQV+D+  E +  A +G R+L+T LTKRMAEDL
Sbjct: 473 QTGGVFTEQVIRPTGLIDPPTIIRPVATQVDDLIAECHEVAAKGQRVLVTTLTKRMAEDL 532

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           TEY++E+ IRVRYMHS+++TLERIEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILD
Sbjct: 533 TEYMHEQGIRVRYMHSDIETLERIEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILD 592

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH 718
           ADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD IT S++ AI ET RRREKQ  +N++H
Sbjct: 593 ADKEGFLRSETSLIQTIGRAARNVDGRVILYADKITGSMERAIAETNRRREKQKAYNEEH 652

Query: 719 NINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL--SLSKKKGKAHLKSLRKQMHLAAD 776
            I P+S++  I ++++ +   D    ++ +D  +   +      +AH+  L ++M  AA 
Sbjct: 653 GITPESIRRNIGDILESVYERD----HVRVDTGEADEAFIGHNLRAHIADLERKMKDAAA 708

Query: 777 NLNFEEAARIRDEIKRLKSS 796
           +L FE AAR+RDEIKRL+++
Sbjct: 709 DLEFETAARLRDEIKRLEAT 728


>gi|254475981|ref|ZP_05089367.1| excinuclease ABC, B subunit [Ruegeria sp. R11]
 gi|214030224|gb|EEB71059.1| excinuclease ABC, B subunit [Ruegeria sp. R11]
          Length = 732

 Score =  925 bits (2391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/655 (64%), Positives = 529/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F M T++ P+GDQPAAI +L  GI   E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 30  FVMHTEFAPAGDQPAAIKELAGGIQDGERDQVLLGATGTGKTFTMAKVIEETQRPAIILA 89

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP N+VEYFVS+YDYYQPEAYVPR+DTYIEKES INEQIDRMRH
Sbjct: 90  PNKTLAAQLYGEFKGFFPENSVEYFVSFYDYYQPEAYVPRSDTYIEKESQINEQIDRMRH 149

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+++SVSCIYGIGSVE+YS M   LK+G+  +Q+++++ LV QQYKR 
Sbjct: 150 SATRALLERDDVIIIASVSCIYGIGSVETYSAMTQDLKVGEEYDQRQVMADLVAQQYKRN 209

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GDS+EIFP+HLED AWR+S FG ++E I+EF PLTG++    + I++Y
Sbjct: 210 DQAFQRGSFRVRGDSLEIFPAHLEDRAWRLSFFGEELEGITEFDPLTGERTGTFDQIRVY 269

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PTL  A+  IKEEL+MRL  L  EG+LLEAQRLEQR  +D+EMLE TG C 
Sbjct: 270 ANSHYVTPKPTLKQAVISIKEELRMRLDHLVGEGKLLEAQRLEQRTNFDIEMLEATGHCN 329

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRGD  RK TLAE+
Sbjct: 330 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRGDHRRKFTLAEH 389

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ  G+  EQ+IRPTGL+DP VE
Sbjct: 390 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMEQSGGVFAEQVIRPTGLLDPEVE 449

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DE+    + G R L+T LTKRMAEDLTEY++E+ I+VRYMHS++ TLE
Sbjct: 450 IRPVDMQVDDLLDEVRKVTENGFRTLVTTLTKRMAEDLTEYMHEQGIKVRYMHSDIDTLE 509

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 510 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 569

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S++ A++ET RRREKQ+ +N++H I P +VK+ + +V+  +   D
Sbjct: 570 NADGRVIMYADRITGSMERALNETNRRREKQIAYNEEHGITPATVKKNVEDVLAGLYEGD 629

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++    +  +     +AHL  LR+QM  AA+NL FEEAAR+RDE+KRL++
Sbjct: 630 VDMNRVTATIDK-PMHGANLEAHLAGLREQMRKAAENLEFEEAARLRDEVKRLEA 683


>gi|307295050|ref|ZP_07574892.1| excinuclease ABC, B subunit [Sphingobium chlorophenolicum L-1]
 gi|306879524|gb|EFN10742.1| excinuclease ABC, B subunit [Sphingobium chlorophenolicum L-1]
          Length = 727

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/678 (64%), Positives = 540/678 (79%), Gaps = 2/678 (0%)

Query: 118 KNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVT 177
           K G+ + PHR  +    S+    F++ +DY PSGDQP AIA+L++   + EK Q+LLGVT
Sbjct: 13  KTGEAFVPHRP-ARPEKSEGGRAFKLVSDYEPSGDQPTAIAELVETALTGEKDQVLLGVT 71

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           GSGKTFTMAKVIEA+QRPA+V+APNKILAAQLY EFK+FFP NAVEYFVSYYDYYQPEAY
Sbjct: 72  GSGKTFTMAKVIEALQRPALVLAPNKILAAQLYGEFKSFFPENAVEYFVSYYDYYQPEAY 131

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
           V R+DTYIEKESS+NE IDRMRHSATR+LLER+D ++V+SVSC+YGIGSVE+YS M   +
Sbjct: 132 VARSDTYIEKESSVNEAIDRMRHSATRALLERDDVLIVASVSCLYGIGSVETYSAMTFSM 191

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           K G   +Q+E++  LV  QYKR D    RG FRV GD++EIFPSH ED AWRVS FGN+I
Sbjct: 192 KKGQVEDQREIIRKLVALQYKRNDAAFARGNFRVKGDNLEIFPSHYEDTAWRVSFFGNEI 251

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           EEI EF PLTG+KI +++ +K++ NSH+VTP PTL  AM+ I+ EL  RL EL  EG+LL
Sbjct: 252 EEIVEFDPLTGKKIASLDYVKVFPNSHHVTPGPTLKQAMEAIRFELAERLKELTAEGKLL 311

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESH 477
           EAQRLEQR  +DLEM+  TGSC  IENYSR+LTGR PGEPPPTLFEY+PE++LLFVDESH
Sbjct: 312 EAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLPENALLFVDESH 371

Query: 478 VTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537
            T+PQI  M RGD  RK TLAEYGFRLPSC+DNRPLRF EW+ +RP T+ VSATPG WE+
Sbjct: 372 QTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQTVSVSATPGPWEM 431

Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           EQ  G+  EQ+IRPTGL+DPPVEI+    QV+D+ +E    A QG R L+T LTKRMAED
Sbjct: 432 EQTGGVFSEQVIRPTGLIDPPVEIKPVEDQVDDLINECRKVAAQGYRTLVTTLTKRMAED 491

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTE+++E  I+VRYMHS+V+TLERIE+IRDLRLG +DVL+GINLLREGLDIPECGLVAIL
Sbjct: 492 LTEFMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLIGINLLREGLDIPECGLVAIL 551

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           DADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD +T S++ A++ET+RRREKQ+E+N  
Sbjct: 552 DADKEGFLRSETSLIQTIGRAARNVDGRVILYADRVTGSMERALNETSRRREKQMEYNAA 611

Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
           H I PQ+VK+ I ++I  +  +D  T    ++  +  L     +A+++ L K+M  AA +
Sbjct: 612 HGITPQTVKKNIGDIIAHVASKDQVTVETGLE-DRPHLVGHNLRAYIEDLEKKMRAAAAD 670

Query: 778 LNFEEAARIRDEIKRLKS 795
           L FEEA RIRDEI++L++
Sbjct: 671 LEFEEAGRIRDEIRKLEA 688


>gi|260431431|ref|ZP_05785402.1| excinuclease ABC, B subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415259|gb|EEX08518.1| excinuclease ABC, B subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 726

 Score =  923 bits (2386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/655 (64%), Positives = 531/655 (81%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F M T++ P+GDQP AIA+L +GI   E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 28  FVMHTEFSPAGDQPTAIAELTQGILEGERNQVLLGATGTGKTFTMAKVIEETQRPAIILA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKES INEQIDRMRH
Sbjct: 88  PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESQINEQIDRMRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   LK+G+  +Q+++++ LV QQY+R 
Sbjct: 148 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLKVGNEYDQRQVMADLVAQQYRRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GDS+EI+P+HLED AW++S FG ++E I+EF PLTG++   +E I++Y
Sbjct: 208 DQAFQRGSFRVRGDSLEIWPAHLEDRAWKLSFFGEELEAITEFDPLTGERTDTMEQIRVY 267

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PT+  A+  IK+EL+ RL +L  EG+LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 268 ANSHYVTPKPTMQQAILGIKKELRQRLDQLVGEGKLLEAQRLEQRTNFDLEMLEATGVCN 327

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRGD+ RK TLAE+
Sbjct: 328 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRGDYRRKFTLAEH 387

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP +I VSATP +WELEQ  G+  EQ+IRPTGL+DP VE
Sbjct: 388 GFRLPSCMDNRPLKFEEWDAMRPQSIFVSATPSAWELEQTGGVFTEQVIRPTGLLDPEVE 447

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DE+   + +G R L+T LTKRMAEDLTEY++E+ I+VRYMHS++ T+E
Sbjct: 448 IRPVEMQVDDLLDEVRKVSAKGFRTLVTTLTKRMAEDLTEYMHEQGIKVRYMHSDIDTIE 507

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 508 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 567

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ A++ET RRR KQ+ +N++H I P++VK+ + +V+  +   D
Sbjct: 568 NAEGRVIMYADRITGSMERALEETNRRRAKQIAYNEEHGITPETVKKNVDDVLAGLYAGD 627

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++    +  +     +AHL  LR+QM  AA+NL FEEAARIRDEIKRL++
Sbjct: 628 VDMNRVTATIDK-PMHGANLEAHLDGLREQMRKAAENLEFEEAARIRDEIKRLEA 681


>gi|77462635|ref|YP_352139.1| excinuclease ABC subunit B [Rhodobacter sphaeroides 2.4.1]
 gi|332557517|ref|ZP_08411839.1| excinuclease ABC subunit B [Rhodobacter sphaeroides WS8N]
 gi|77387053|gb|ABA78238.1| Excinuclease ABC subunit B [Rhodobacter sphaeroides 2.4.1]
 gi|332275229|gb|EGJ20544.1| excinuclease ABC subunit B [Rhodobacter sphaeroides WS8N]
          Length = 727

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/655 (65%), Positives = 527/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M+T + P+GDQP AIA+L  G+   E+ Q+LLG TG+GKTFTMAK+IE  QRPAI++A
Sbjct: 27  FEMKTPFQPAGDQPTAIAELAAGVQGGEQNQVLLGATGTGKTFTMAKIIEETQRPAIILA 86

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 87  PNKTLAAQLYGEFKGFFPENAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 146

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+YS M   L +G+S +Q+++++ LV QQY+R 
Sbjct: 147 SATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDLIVGESYDQRQVIAELVAQQYRRN 206

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GDS+E++P+HLED AWR S FG ++E I EF PLTG K  + + I+IY
Sbjct: 207 DQAFQRGSFRVRGDSLEVWPAHLEDRAWRFSFFGEELESIVEFDPLTGAKTDSFKQIRIY 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTPRPT+  A++ IK EL+ RL +L  EG+LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 267 ANSHYVTPRPTMQQAIQGIKRELRQRLDQLVNEGKLLEAQRLEQRTNFDLEMLEATGVCN 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHVT+PQI GMYRGD+ RK TLAE+
Sbjct: 327 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVTVPQIGGMYRGDYRRKFTLAEH 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ  G+  EQ+IRPTGL+DP VE
Sbjct: 387 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFAEQVIRPTGLLDPVVE 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DEI   A  GLR+L+TVLTKRMAEDLTEY +E+ IR+RYMHS++ T+E
Sbjct: 447 IRPVEMQVDDLLDEIRRVAAAGLRVLVTVLTKRMAEDLTEYFHEQGIRIRYMHSDIDTIE 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 507 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S++ A+ ET RRREKQ+ +N +H I PQ+V++ + +V+  +   D
Sbjct: 567 NADGRVIMYADRITGSMERALRETERRREKQIAYNIEHGITPQTVRKNVEDVLAGLWQGD 626

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              + ++    +  +      AHL  LR  M  AA+NL FEEAAR+RDEIKRL++
Sbjct: 627 TDQSRVTAKVDKPMVGANLA-AHLDGLRVSMRKAAENLEFEEAARLRDEIKRLEA 680


>gi|221638490|ref|YP_002524752.1| excinuclease ABC subunit B [Rhodobacter sphaeroides KD131]
 gi|221159271|gb|ACM00251.1| UvrABC system protein B [Rhodobacter sphaeroides KD131]
          Length = 727

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/655 (65%), Positives = 527/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M+T + P+GDQP AIA+L  G+   E+ Q+LLG TG+GKTFTMAK+IE  QRPAI++A
Sbjct: 27  FEMKTPFQPAGDQPTAIAELAAGVQGGEQNQVLLGATGTGKTFTMAKIIEETQRPAIILA 86

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 87  PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 146

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+YS M   L +G+S +Q+++++ LV QQY+R 
Sbjct: 147 SATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDLIVGESYDQRQVIAELVAQQYRRN 206

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GDS+E++P+HLED AWR S FG ++E I EF PLTG K  + + I+IY
Sbjct: 207 DQAFQRGSFRVRGDSLEVWPAHLEDRAWRFSFFGEELESIVEFDPLTGAKTDSFKQIRIY 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTPRPT+  A++ IK EL+ RL +L  EG+LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 267 ANSHYVTPRPTMQQAIQGIKRELRQRLDQLVNEGKLLEAQRLEQRTNFDLEMLEATGVCN 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHVT+PQI GMYRGD+ RK TLAE+
Sbjct: 327 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVTVPQIGGMYRGDYRRKFTLAEH 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ  G+  EQ+IRPTGL+DP VE
Sbjct: 387 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFAEQVIRPTGLLDPVVE 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DEI   A  GLR+L+TVLTKRMAEDLTEY +E+ IR+RYMHS++ T+E
Sbjct: 447 IRPVEMQVDDLLDEIRRVAAAGLRVLVTVLTKRMAEDLTEYFHEQGIRIRYMHSDIDTIE 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 507 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S++ A+ ET RRREKQ+ +N +H I PQ+V++ + +V+  +   D
Sbjct: 567 NADGRVIMYADRITGSMERALRETERRREKQIAYNIEHGITPQTVRKNVEDVLSGLWQGD 626

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              + ++    +  +      AHL  LR  M  AA+NL FEEAAR+RDEIKRL++
Sbjct: 627 TDQSRVTAKVDKPMVGANLA-AHLDGLRVSMRKAAENLEFEEAARLRDEIKRLEA 680


>gi|126461527|ref|YP_001042641.1| excinuclease ABC subunit B [Rhodobacter sphaeroides ATCC 17029]
 gi|126103191|gb|ABN75869.1| Excinuclease ABC subunit B [Rhodobacter sphaeroides ATCC 17029]
          Length = 727

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/655 (65%), Positives = 527/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M+T + P+GDQP AIA+L  G+   E+ Q+LLG TG+GKTFTMAK+IE  QRPAI++A
Sbjct: 27  FEMKTPFQPAGDQPTAIAELAAGVQGGEQNQVLLGATGTGKTFTMAKIIEETQRPAIILA 86

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 87  PNKTLAAQLYGEFKGFFPENAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 146

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+YS M   L +G+S +Q+++++ LV QQY+R 
Sbjct: 147 SATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDLIVGESYDQRQVIAELVAQQYRRN 206

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GDS+E++P+HLED AWR S FG ++E I EF PLTG K  + + I+IY
Sbjct: 207 DQAFQRGSFRVRGDSLEVWPAHLEDRAWRFSFFGEELESIVEFDPLTGAKTDSFKQIRIY 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTPRPT+  A++ IK EL+ RL +L  EG+LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 267 ANSHYVTPRPTMQQAIQGIKRELRQRLDQLVNEGKLLEAQRLEQRTNFDLEMLEATGVCN 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHVT+PQI GMYRGD+ RK TLAE+
Sbjct: 327 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVTVPQIGGMYRGDYRRKFTLAEH 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ  G+  EQ+IRPTGL+DP VE
Sbjct: 387 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFAEQVIRPTGLLDPVVE 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DEI   A  GLR+L+TVLTKRMAEDLTEY +E+ IR+RYMHS++ T+E
Sbjct: 447 IRPVEMQVDDLLDEIRRVAAAGLRVLVTVLTKRMAEDLTEYFHEQGIRIRYMHSDIDTIE 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 507 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S++ A+ ET RRREKQ+ +N +H I PQ+V++ + +V+  +   D
Sbjct: 567 NADGRVIMYADRITGSMERALRETERRREKQIAYNIEHGITPQTVRKNVEDVLAGLWQGD 626

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              + ++    +  +      AHL  LR  M  AA+NL FEEAAR+RDEIKRL++
Sbjct: 627 TDQSRVTAKVDKPMVGANLA-AHLDGLRVSMRKAAENLEFEEAARLRDEIKRLEA 680


>gi|163743673|ref|ZP_02151048.1| excinuclease ABC subunit B [Phaeobacter gallaeciensis 2.10]
 gi|161383040|gb|EDQ07434.1| excinuclease ABC subunit B [Phaeobacter gallaeciensis 2.10]
          Length = 732

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/655 (64%), Positives = 525/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F M T++ P+GDQP AI +L +G+   E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 30  FVMHTEFDPAGDQPTAIKELSEGVLEGERNQVLLGATGTGKTFTMAKVIEETQRPAIILA 89

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP N+VEYFVS+YDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 90  PNKTLAAQLYGEFKGFFPENSVEYFVSFYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 149

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER+D I+++SVSCIYGIGSVE+YS M   LK+GD  +Q+++++ LV QQYKR 
Sbjct: 150 SATRSLLERDDVIIIASVSCIYGIGSVETYSAMTQDLKVGDDYDQRQVMADLVAQQYKRN 209

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GDS+EIFP+HLED AWR+S FG ++E I+EF PLTG+K    + I++Y
Sbjct: 210 DQAFQRGSFRVRGDSLEIFPAHLEDRAWRLSFFGEELEGITEFDPLTGEKTGTFDQIRVY 269

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PTL  A+  IKEELKMRL +L  EG+LLEAQRLEQR  +D+EMLE TG C 
Sbjct: 270 ANSHYVTPKPTLKQAVISIKEELKMRLDQLVGEGKLLEAQRLEQRTNFDIEMLEATGHCN 329

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD  RK TLAE+
Sbjct: 330 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDHRRKFTLAEH 389

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WELEQ  G+  EQ+IRPTGL+DP VE
Sbjct: 390 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPSKWELEQSSGVFAEQVIRPTGLLDPQVE 449

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DE+      G R L+T LTKRMAEDLTEY++E+ I+VRYMHS++ TLE
Sbjct: 450 IRPVDMQVDDLLDEVRRVTADGFRTLVTTLTKRMAEDLTEYMHEQGIKVRYMHSDIDTLE 509

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 510 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 569

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ A+ ET RRREKQ+ +N++H I P +VK+ + +V+  +   D
Sbjct: 570 NAEGRVIMYADRITGSMERALGETNRRREKQIAYNEEHGITPATVKKNVEDVLAGLYAGD 629

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++    +  +     +AHL  LR+QM  AA+NL FEEAAR+RDE+KRL++
Sbjct: 630 VDMNRVTATIDK-PMHGANLEAHLAGLREQMRKAAENLEFEEAARLRDEVKRLEA 683


>gi|89056093|ref|YP_511544.1| excinuclease ABC subunit B [Jannaschia sp. CCS1]
 gi|88865642|gb|ABD56519.1| Excinuclease ABC subunit B [Jannaschia sp. CCS1]
          Length = 731

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/655 (64%), Positives = 525/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +QT++ P+GDQP AIA+L +GI   E+ Q+LLG TG+GKTFTMAK+IE  QRPAI++A
Sbjct: 31  FVLQTEFEPAGDQPTAIAELSEGIREGERDQVLLGATGTGKTFTMAKMIEETQRPAIILA 90

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+EFKNFFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 91  PNKTLAAQLYAEFKNFFPENAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 150

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   L  G   +Q+++++ LV QQY+R 
Sbjct: 151 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLHAGREYDQRKVIADLVAQQYRRN 210

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GDS+E++P+HL+D AW++S FG ++E I+EF PLTGQK    E I++Y
Sbjct: 211 DAAFQRGCFRVRGDSLEVWPAHLDDRAWKLSFFGEELESITEFDPLTGQKTDTFEKIRVY 270

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTPRPT+  AMK IK EL MRL ++  EG+LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 271 ANSHYVTPRPTMQQAMKGIKSELAMRLKQMIDEGKLLEAQRLEQRTNFDLEMLEATGVCN 330

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFEYIP+++++F DESHV++PQI GMYRGD+ RK TLAE+
Sbjct: 331 GIENYSRYLTGRAPGEPPPTLFEYIPDNAIVFADESHVSVPQIGGMYRGDYRRKFTLAEH 390

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ  G+  EQ+IRPTGL+DP +E
Sbjct: 391 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFTEQVIRPTGLIDPQIE 450

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DE+   A  G R L+T LTKRMAEDLTEY++E+ IRVRYMHS++ TLE
Sbjct: 451 IRPVDMQVDDLLDEVRKVAADGYRTLVTTLTKRMAEDLTEYMHEQGIRVRYMHSDIDTLE 510

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 511 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 570

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S++ A+ ET RRR KQL +N++H I P ++K+ + +++  +   D
Sbjct: 571 NADGRVIMYADKITGSMERAMRETERRRVKQLAYNEEHGITPATIKKNVDDILMGVYQGD 630

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              + ++    +  L      AHL  LR +M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 631 TDQSRVTAKVDK-PLVGANLAAHLDGLRDKMRKAAENLEFEEAARLRDEVKRLET 684


>gi|84502900|ref|ZP_01001013.1| UvrABC system protein B [Oceanicola batsensis HTCC2597]
 gi|84388883|gb|EAQ01753.1| UvrABC system protein B [Oceanicola batsensis HTCC2597]
          Length = 727

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/653 (64%), Positives = 525/653 (80%), Gaps = 1/653 (0%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M T++ P+GDQP AIA+L  GI   E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++APN
Sbjct: 27  MNTEFDPAGDQPTAIAELSGGIDGGERDQVLLGATGTGKTFTMAKVIEETQRPAIILAPN 86

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKES INEQIDRMRHSA
Sbjct: 87  KTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESQINEQIDRMRHSA 146

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y  M   LK G + +Q+++++ LV QQY+R D 
Sbjct: 147 TRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLKAGGTYDQRQVIADLVAQQYRRNDA 206

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
              RG+FRV GDS+EIFP+HLED AWR+S FG ++E I+EF PLTG K    + I++YAN
Sbjct: 207 AFQRGSFRVRGDSLEIFPAHLEDRAWRLSFFGEELESITEFDPLTGTKTNTFDQIRVYAN 266

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTP+PT+  A+  IK+EL+ RL +L  EG+LLEAQRLEQR  +DLEMLE TG C  I
Sbjct: 267 SHYVTPKPTMQQAVINIKKELRQRLDQLVGEGKLLEAQRLEQRTNFDLEMLEATGVCNGI 326

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFE+IP+ +++F DESHV+IPQI GMYRGD+ RK TLAE+GF
Sbjct: 327 ENYSRYLTGRAPGEPPPTLFEFIPDTAIVFADESHVSIPQIGGMYRGDYRRKFTLAEHGF 386

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPL+FEEW+ +RP +I VSATPG+WE+EQ  G+  EQ+IRPTGL+DP VEIR
Sbjct: 387 RLPSCMDNRPLKFEEWDAMRPQSIYVSATPGNWEMEQTGGVFTEQVIRPTGLLDPQVEIR 446

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
             + QV+D+ DE+     QG R L+T LTKRMAEDLTEY++E+ I+VRYMHS++ T+ERI
Sbjct: 447 PVKMQVDDLLDEVRKVTAQGFRTLVTTLTKRMAEDLTEYMHEQGIKVRYMHSDIDTIERI 506

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARN 
Sbjct: 507 EILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNA 566

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
             +VI+YAD+IT S++ A+ ET RRREKQ+ +N++H I P ++++ + +++  +   D  
Sbjct: 567 EGRVIMYADSITGSMERALAETERRREKQIAYNEEHGITPATIRKNVEDILAGLYKGDVD 626

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              ++   ++  +     +AHL  LR  M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 627 MNRVTAQVEKPMVGANL-QAHLDGLRADMRKAAENLEFEEAARLRDEVKRLEA 678


>gi|254511666|ref|ZP_05123733.1| excinuclease ABC, B subunit [Rhodobacteraceae bacterium KLH11]
 gi|221535377|gb|EEE38365.1| excinuclease ABC, B subunit [Rhodobacteraceae bacterium KLH11]
          Length = 728

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/655 (64%), Positives = 528/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F M T++ P+GDQP AI +L  G+H  E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 28  FVMHTEFAPAGDQPTAITELAAGVHEGERDQVLLGATGTGKTFTMAKVIEETQRPAIILA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP N+VEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 88  PNKTLAAQLYGEFKGFFPENSVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   LK+G   +Q+++++ LV QQY+R 
Sbjct: 148 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLKVGKEYDQRQVMADLVAQQYRRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GDS+EI+P+HLED AW++S FG ++E+I+EF PLTG+K   +E I++Y
Sbjct: 208 DQAFQRGSFRVRGDSLEIWPAHLEDRAWKLSFFGEELEQITEFDPLTGEKTDTMEHIRVY 267

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PT+  A+  IK+EL+MRL +L  EG+LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 268 ANSHYVTPKPTMQQAIIGIKKELRMRLDQLVGEGKLLEAQRLEQRTNFDLEMLEATGVCN 327

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRGD+ RK TLAE+
Sbjct: 328 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRGDYRRKFTLAEH 387

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WE+EQ  GI  EQ+IRPTGL+DP VE
Sbjct: 388 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAKWEIEQTGGIFTEQVIRPTGLLDPEVE 447

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DE+   A  G R L+T LTKRMAEDLTEYL+E+ I+VRYMHS++ TLE
Sbjct: 448 IRPVSMQVDDLLDEVRKVAADGYRTLVTTLTKRMAEDLTEYLHEQGIKVRYMHSDIDTLE 507

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAAR
Sbjct: 508 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAAR 567

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S++ A++ET RRR KQ+ +N++H I P++VK+ + +V+  +   D
Sbjct: 568 NADGRVIMYADKITGSMERALNETNRRRAKQIAYNEEHGITPETVKKNVEDVLAGLYEGD 627

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++    +  +     +AHL  LR+QM  AA+NL FEEAA IRDEIKRL++
Sbjct: 628 VDMNRVTATIDK-PMHGANLEAHLDGLREQMRKAAENLEFEEAANIRDEIKRLEA 681


>gi|332188833|ref|ZP_08390542.1| excinuclease ABC, B subunit [Sphingomonas sp. S17]
 gi|332011143|gb|EGI53239.1| excinuclease ABC, B subunit [Sphingomonas sp. S17]
          Length = 730

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/683 (64%), Positives = 544/683 (79%), Gaps = 5/683 (0%)

Query: 113 DNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQL 172
           D P  + G  + PHR  S    ++    F++ TDY  SGDQPAAI +L     + +K Q+
Sbjct: 10  DEP--ETGVSFIPHRP-SRPEKAEGGKRFELVTDYTASGDQPAAIRELTAAARAGDKDQV 66

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           LLGVTGSGKTFTMAKVIE +QRPA+++APNKILAAQLY EFKNFFP+NAVEYFVSYYDYY
Sbjct: 67  LLGVTGSGKTFTMAKVIEELQRPALILAPNKILAAQLYGEFKNFFPNNAVEYFVSYYDYY 126

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           QPEAYVPR+DTYIEKESSINE IDRMRHSATR+LLER+D I+V+SVSC+YGIGSVE+YS 
Sbjct: 127 QPEAYVPRSDTYIEKESSINESIDRMRHSATRALLERDDVIIVASVSCLYGIGSVETYSA 186

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
           MI  LK G SV+Q+E++  LV  QYKR D   +RG FRV GD++EIFPSH ED AWRVS 
Sbjct: 187 MIFDLKKGQSVDQREIIRKLVALQYKRNDAAFMRGNFRVKGDNLEIFPSHYEDSAWRVSF 246

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG++IEEI EF PLTG+K+ ++ +++IYANSHYVTP PT+  A++ IK EL  RL ELE 
Sbjct: 247 FGDEIEEIVEFDPLTGKKVAHLNSVRIYANSHYVTPGPTMKQAVEAIKFELTERLKELEA 306

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           EG+LLE QRLEQR  +DLEM+  TGSC  IENYSR+LTGR PGEPPPTLFEY+PE+++LF
Sbjct: 307 EGKLLERQRLEQRTNFDLEMIAATGSCNGIENYSRFLTGRLPGEPPPTLFEYLPENAVLF 366

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           VDESHVTI QI+GM RGD  RK TLAEYGFRLPS +DNRPLRF EW+ +RP T+ VSATP
Sbjct: 367 VDESHVTIGQINGMSRGDHRRKITLAEYGFRLPSAIDNRPLRFNEWDAMRPQTVSVSATP 426

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
           G+WE+EQ  G+ VEQ+IRPTGL+DPPVEI+    QV+D+  E     + G R L+T LTK
Sbjct: 427 GNWEMEQTGGVFVEQVIRPTGLIDPPVEIKPVEEQVQDLIIEARKTTELGYRTLVTTLTK 486

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RMAEDLTEY++E  I+VRYMHS+V+TLERIE+IRDLRLG +DVL+GINLLREGLDIPECG
Sbjct: 487 RMAEDLTEYMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLIGINLLREGLDIPECG 546

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           LVAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD IT S++ A+ ET+RRREKQ+
Sbjct: 547 LVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRITGSMERAMSETSRRREKQM 606

Query: 713 EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMH 772
            +N +H I PQ+++ +I ++I  +   D  T  + ID  +  +     +A+++ L K+M 
Sbjct: 607 AYNTEHGITPQTIRRQIGDIIAHVASGDQVT--VPIDEDRPHMVGHNLRAYIEELEKKMR 664

Query: 773 LAADNLNFEEAARIRDEIKRLKS 795
            AA +L FEEA R+RDEI++L++
Sbjct: 665 KAAADLEFEEAGRLRDEIRQLEN 687


>gi|163736820|ref|ZP_02144238.1| excinuclease ABC, B subunit [Phaeobacter gallaeciensis BS107]
 gi|161389424|gb|EDQ13775.1| excinuclease ABC, B subunit [Phaeobacter gallaeciensis BS107]
          Length = 732

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/655 (64%), Positives = 525/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F M T++ P+GDQP AI +L +G+   E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 30  FVMHTEFDPAGDQPTAIKELSEGVLEGERNQVLLGATGTGKTFTMAKVIEETQRPAIILA 89

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP N+VEYFVS+YDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 90  PNKTLAAQLYGEFKGFFPENSVEYFVSFYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 149

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER+D I+++SVSCIYGIGSVE+YS M   LK+GD  +Q+++++ LV QQYKR 
Sbjct: 150 SATRSLLERDDVIIIASVSCIYGIGSVETYSAMTQDLKVGDEYDQRQVMADLVAQQYKRN 209

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GDS+EIFP+HLED AWR+S FG ++E I+EF PLTG+K    + I++Y
Sbjct: 210 DQAFQRGSFRVRGDSLEIFPAHLEDRAWRLSFFGEELEGITEFDPLTGEKTGTFDQIRVY 269

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PTL  A+  IKEELKMRL +L  EG+LLEAQRLEQR  +D+EMLE TG C 
Sbjct: 270 ANSHYVTPKPTLKQAVISIKEELKMRLDQLVGEGKLLEAQRLEQRTNFDIEMLEATGHCN 329

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD  RK TLAE+
Sbjct: 330 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDHRRKFTLAEH 389

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WELEQ  G+  EQ+IRPTGL+DP VE
Sbjct: 390 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPSKWELEQSSGVFAEQVIRPTGLLDPQVE 449

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DE+      G R L+T LTKRMAEDLTEY++E+ I+VRYMHS++ TLE
Sbjct: 450 IRPVDMQVDDLLDEVRRVTADGFRTLVTTLTKRMAEDLTEYMHEQGIKVRYMHSDIDTLE 509

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 510 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 569

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ A+ ET RRR+KQ+ +N++H I P +VK+ + +V+  +   D
Sbjct: 570 NAEGRVIMYADRITGSMERALGETNRRRDKQIAYNEEHGITPATVKKNVEDVLAGLYAGD 629

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++    +  +     +AHL  LR+QM  AA+NL FEEAAR+RDE+KRL++
Sbjct: 630 VDMNRVTATIDK-PMHGANLEAHLAGLREQMRKAAENLEFEEAARLRDEVKRLEA 683


>gi|329849766|ref|ZP_08264612.1| excinuclease ABC, B subunit [Asticcacaulis biprosthecum C19]
 gi|328841677|gb|EGF91247.1| excinuclease ABC, B subunit [Asticcacaulis biprosthecum C19]
          Length = 723

 Score =  920 bits (2379), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/678 (64%), Positives = 538/678 (79%), Gaps = 7/678 (1%)

Query: 123 WTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182
           W PHR       S+    F++   Y P+GDQP AIA+L+ G+++RE  Q+LLGVTGSGKT
Sbjct: 31  WVPHRPER-PAKSEGGKRFRLAAPYEPAGDQPTAIAELVGGVNAREHDQVLLGVTGSGKT 89

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242
           +TMAK+IE  QRPA+++A NK LAAQL+SEFK+FFP NAVEYFVSYYDYYQPEAYVPRTD
Sbjct: 90  YTMAKIIEQTQRPALILAHNKTLAAQLFSEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTD 149

Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302
           TYIEK+SS+NEQIDRMRHSATR++LER+D IVV+SVSCIYGIGSVE+Y+ M  +LK+G S
Sbjct: 150 TYIEKDSSVNEQIDRMRHSATRAILERDDVIVVASVSCIYGIGSVETYTAMTFELKVGQS 209

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
           +++ +L + LV  QYKR D    RGTFR  GD IEIFP+H ED AWR++MFG++IE + E
Sbjct: 210 IDEGQLRADLVALQYKRNDAAFERGTFRRRGDVIEIFPAHYEDRAWRINMFGDEIESMHE 269

Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
           F PLTG+KI +++ +K+YA SHYVTPRPTLN A+  IK+ELK+RL +L  EG+LLEAQRL
Sbjct: 270 FDPLTGRKIVDLQDLKVYAASHYVTPRPTLNQAIDGIKKELKLRLDQLHGEGKLLEAQRL 329

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482
           EQR T+DLEM++ TG+C  IENYSRYLTGR  G PPPT FEY+P+++LLFVDESHV++PQ
Sbjct: 330 EQRTTFDLEMMQATGACAGIENYSRYLTGRGAGAPPPTFFEYLPDNALLFVDESHVSVPQ 389

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542
           I GMYRGDF RK+ LAEYGFRLPSCMDNRPL+FEEW+ +RP ++ VSATPG WE+E+  G
Sbjct: 390 IGGMYRGDFARKSVLAEYGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPGKWEMERTAG 449

Query: 543 IIVEQIIRPTGLVDPPVEIRSAR----TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           +  EQ+IRPTGL+DPPVEIR        QV+DV  E+   A+ G R L+TVLTK+MAE+L
Sbjct: 450 VFAEQVIRPTGLIDPPVEIRPVHKDGFNQVDDVIAEVREVAKHGYRSLITVLTKKMAENL 509

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           T+Y++E+ IRVRYMHS+++TLERIEIIRDLRLG FDVL+GINLLREGLDIPECG VAILD
Sbjct: 510 TDYMHEQGIRVRYMHSDIETLERIEIIRDLRLGAFDVLIGINLLREGLDIPECGFVAILD 569

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH 718
           ADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD +T S++ A+ ET RRREKQ+ +N +H
Sbjct: 570 ADKEGFLRSETSLIQTIGRAARNVDGRVILYADRMTGSMERALAETARRREKQMAYNVEH 629

Query: 719 NINPQSVKEKIMEVID-PILLEDAATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
            I P+SVK  I +++D P    D     + + +           +A LK L  +M  AA 
Sbjct: 630 GITPESVKRGISDILDSPFEKGDRVQIPMGVAEKDSKPFMGSNFQATLKDLETKMREAAG 689

Query: 777 NLNFEEAARIRDEIKRLK 794
           NL FE AAR+RDEIKRLK
Sbjct: 690 NLEFETAARLRDEIKRLK 707


>gi|99079985|ref|YP_612139.1| excinuclease ABC subunit B [Ruegeria sp. TM1040]
 gi|99036265|gb|ABF62877.1| Excinuclease ABC subunit B [Ruegeria sp. TM1040]
          Length = 730

 Score =  920 bits (2377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/655 (65%), Positives = 527/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F MQT + P+GDQP AIA+L +G+   E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 30  FVMQTAFSPAGDQPTAIAELSQGVLDGERDQVLLGATGTGKTFTMAKVIEETQRPAIILA 89

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVS+YDYYQPEAYVPR+DTYIEKES INEQIDRMRH
Sbjct: 90  PNKTLAAQLYGEFKGFFPDNAVEYFVSFYDYYQPEAYVPRSDTYIEKESQINEQIDRMRH 149

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+++SVSCIYGIGSVE+YS M   L +G   +Q+++++ LV QQYKR 
Sbjct: 150 SATRALLERDDVIIIASVSCIYGIGSVETYSAMTQDLIVGQDYDQRQIMADLVAQQYKRN 209

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD++EIFP+HLED AW++S FG ++E I+EF PLTG++  + E I++Y
Sbjct: 210 DQAFQRGAFRVRGDTLEIFPAHLEDRAWKLSFFGEELESITEFDPLTGERTGSFEKIRVY 269

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PTLN A+  IK EL+ RL  L  EG+LLEAQRLEQR  +D+EMLE TG C 
Sbjct: 270 ANSHYVTPKPTLNQAVISIKNELRQRLDNLVSEGKLLEAQRLEQRTNFDIEMLEATGHCN 329

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD  RK TLAE+
Sbjct: 330 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDHRRKMTLAEH 389

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ  G+  EQ+IRPTGL+DP VE
Sbjct: 390 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMEQSGGVFAEQVIRPTGLLDPEVE 449

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DEI     +G R L TVLTKRMAEDLTEYL+E+ I+VRYMHS++ T+E
Sbjct: 450 IRPVGMQVDDLLDEIRDVTARGYRTLATVLTKRMAEDLTEYLHEQGIKVRYMHSDIDTIE 509

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 510 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 569

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD IT S++ AI ET RRREKQ+ +N++H I P++VK+ + +V+  +   D
Sbjct: 570 NSEGKVIMYADRITGSMERAIAETNRRREKQIAYNEEHGITPETVKKNVDDVLAGLYEGD 629

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              + ++    +  L     +AHL  LR+QM  AA+NL FEEAAR+RDE+KRL++
Sbjct: 630 TDMSRVTATIDK-PLHGANFEAHLDGLREQMRKAAENLEFEEAARLRDEVKRLEA 683


>gi|294676922|ref|YP_003577537.1| UvrABC system protein B [Rhodobacter capsulatus SB 1003]
 gi|294475742|gb|ADE85130.1| UvrABC system protein B [Rhodobacter capsulatus SB 1003]
          Length = 727

 Score =  919 bits (2376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/655 (65%), Positives = 526/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F M++++ P+GDQP AIA++ K + + E+ Q+LLG TG+GKT+TMAKVIEA QRPAI++A
Sbjct: 27  FVMKSEFSPAGDQPTAIAEISKAVLAGERDQVLLGATGTGKTYTMAKVIEATQRPAIILA 86

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV RTDTYIEKES INEQIDRMRH
Sbjct: 87  PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARTDTYIEKESMINEQIDRMRH 146

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+YS M   L +G   E ++ L+ LV QQYKR 
Sbjct: 147 SATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDLSVGGLYESRKFLADLVAQQYKRL 206

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GD+++++P+HLED AWR S FG ++E I EF PLTG +  + + I+IY
Sbjct: 207 DAAFQRGSFRVKGDTVDLWPAHLEDRAWRFSFFGEELEAIIEFDPLTGARTDSFQQIRIY 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVT RPTL  A K I+ EL  RL +L  EG+LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 267 ANSHYVTRRPTLQQATKSIRIELAQRLKQLHDEGKLLEAQRLEQRTNFDLEMLEATGVCN 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+ +++F DESHVT+PQI GMYRGD+ RK TLAE+
Sbjct: 327 GIENYSRYLTGRAPGEPPPTLFEFIPDTAIVFADESHVTVPQIGGMYRGDYRRKFTLAEH 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WELEQ  G+  EQ+IRPTGL+DP VE
Sbjct: 387 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAPWELEQTGGVFTEQVIRPTGLLDPEVE 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+ DEI   A +GLR+L+T LTKRMAEDLTEYL+E+ IRVRYMHS++ T+E
Sbjct: 447 IRPVETQVDDLLDEIRKVAARGLRVLVTTLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIE 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 507 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S+Q A++ET RRREKQ+ +N +H I PQ+V++ + +V+  +   D
Sbjct: 567 NADGRVIMYADRITGSMQRALNETNRRREKQIAYNLEHGITPQTVRKNVEDVLAGLWAGD 626

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++   +  ++      AHL++LR +M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 627 TDMARVTAKVEGPAVGSNLA-AHLEALRTKMRKAAENLEFEEAARLRDEVKRLEA 680


>gi|119384053|ref|YP_915109.1| excinuclease ABC subunit B [Paracoccus denitrificans PD1222]
 gi|119373820|gb|ABL69413.1| Excinuclease ABC subunit B [Paracoccus denitrificans PD1222]
          Length = 741

 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/655 (64%), Positives = 524/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F M++++ P+GDQP AIA+L +G+ + E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 40  FVMRSEFQPAGDQPTAIAELSQGVRAGERDQVLLGATGTGKTFTMAKVIEQTQRPAIILA 99

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INE IDRMRH
Sbjct: 100 PNKTLAAQLYGEFKGFFPENAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEAIDRMRH 159

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+YS M   + +G   +Q+E L+ LV QQY+R 
Sbjct: 160 SATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDMVVGQLYDQREFLAELVAQQYRRL 219

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD +E++P+HLED AWR   FGN++E I+EF PLTG K  + + I+IY
Sbjct: 220 DAAFQRGGFRVRGDLVEVWPAHLEDRAWRFDFFGNELESITEFDPLTGAKTDSFKQIRIY 279

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTPRPTL  A+K I+ EL+ RL +L  EG+LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 280 ANSHYVTPRPTLQQAIKGIRTELQTRLKQLADEGKLLEAQRLEQRTNFDLEMLEATGVCN 339

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRGDF RK TLAE+
Sbjct: 340 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRGDFRRKFTLAEH 399

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WEL+Q  G+  EQ+IRPTGL+DP VE
Sbjct: 400 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAQWELDQTGGVFTEQVIRPTGLLDPQVE 459

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DE+   A  G+R L+T LTKRMAEDLTEYL+E+ IRVRYMHS++ T+E
Sbjct: 460 IRPVEMQVDDLLDEVRKVAAAGMRTLVTTLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIE 519

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 520 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 579

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S++ A+ ET RRR+KQ+ +N+ H I PQ+V++ + +V+  +   D
Sbjct: 580 NADGRVIMYADRITGSMERAMAETERRRQKQVAYNEAHGITPQTVRKNVEDVLAGLWQGD 639

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                I+   ++  +      AHL +LR QM  AA+NL FEEAAR+RDE+KRL++
Sbjct: 640 TDQARITTRVEKPMVGANLA-AHLDALRAQMRKAAENLEFEEAARLRDEVKRLEA 693


>gi|126727445|ref|ZP_01743279.1| excinuclease ABC subunit B [Rhodobacterales bacterium HTCC2150]
 gi|126703225|gb|EBA02324.1| excinuclease ABC subunit B [Rhodobacterales bacterium HTCC2150]
          Length = 727

 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/654 (65%), Positives = 525/654 (80%), Gaps = 1/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T + P+GDQP AIA+L +GI   E+ Q+LLG TG+GKTFTMAK+IE  QRPAI++A
Sbjct: 25  FVLHTPFEPAGDQPTAIAELKEGILDGERNQVLLGATGTGKTFTMAKLIEETQRPAIILA 84

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVS+YDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 85  PNKTLAAQLYGEFKGFFPENAVEYFVSFYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 144

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER+D I+V+SVSCIYGIGSVE+Y  M + L  G S +Q++++  LV QQYKR 
Sbjct: 145 SATRSLLERDDVIIVASVSCIYGIGSVETYGAMTLDLVAGKSYKQRDVIMDLVAQQYKRN 204

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GDS+EIFP+HLED AW++S FG+++E I+EF PLTGQK   +E I++Y
Sbjct: 205 DAAFARGTFRVRGDSLEIFPAHLEDRAWKLSFFGDELETITEFDPLTGQKTGTMEQIRVY 264

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PTL  A+  IKEEL++RL ++E +G+LLEAQRLEQR  +DLEMLE  G C 
Sbjct: 265 ANSHYVTPKPTLRQAIVSIKEELRLRLAQMEADGKLLEAQRLEQRTHFDLEMLEAQGFCN 324

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+ +++F DESHV++PQI GMY+GD+ RK TLAE+
Sbjct: 325 GIENYSRYLTGRAPGEPPPTLFEFIPDHAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 384

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP T+ VSATP +WELEQ  G+  EQIIRPTGL+DP +E
Sbjct: 385 GFRLPSCMDNRPLKFEEWDAMRPQTVFVSATPQNWELEQSGGVFAEQIIRPTGLLDPVIE 444

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+ DE+   A+QGLR L+T LTKRMAEDLTEY++E+  RVRYMHS++ TLE
Sbjct: 445 IRPVGTQVDDLLDEVGKMAEQGLRTLVTTLTKRMAEDLTEYMHEQGTRVRYMHSDIDTLE 504

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAAR
Sbjct: 505 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAAR 564

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ A+ ET RRREKQ  +N +H I P +VK+ + +V+  +   D
Sbjct: 565 NAGGRVIMYADRITGSMERAMGETERRREKQNAYNIEHGITPATVKKNVEDVLAGLYNGD 624

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              + ++    + ++      A L+ LR  M  AA+NL FEEAAR+RDE+KRL+
Sbjct: 625 TDQSRVTTKVDKPAMGANLA-AVLEGLRTDMRKAAENLEFEEAARLRDEVKRLE 677


>gi|16127211|ref|NP_421775.1| excinuclease ABC subunit B [Caulobacter crescentus CB15]
 gi|221236012|ref|YP_002518449.1| excinuclease ABC subunit B [Caulobacter crescentus NA1000]
 gi|13424613|gb|AAK24943.1| excinuclease ABC, subunit B [Caulobacter crescentus CB15]
 gi|220965185|gb|ACL96541.1| excinuclease ABC subunit B [Caulobacter crescentus NA1000]
          Length = 749

 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/679 (65%), Positives = 540/679 (79%), Gaps = 7/679 (1%)

Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181
           +WTPHR  S  + S+    F++ +DY P+GDQP AIA+L++G+ + ++ Q+LLGVTGSGK
Sbjct: 29  LWTPHRP-SRPDKSEGGKKFKLVSDYQPAGDQPTAIAELVEGLQNGDQDQVLLGVTGSGK 87

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
           TFTMA+VI   QRPA+++APNK LAAQLYSE K+FFP NAVEYFVSYYDYYQPEAYVPRT
Sbjct: 88  TFTMAQVIARTQRPALILAPNKTLAAQLYSEMKSFFPENAVEYFVSYYDYYQPEAYVPRT 147

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           DTYIEK+SSINEQIDRMRHSATR++LER+D IVV+SVSCIYGIGSVE+Y+ M   L++G 
Sbjct: 148 DTYIEKDSSINEQIDRMRHSATRAILERDDVIVVASVSCIYGIGSVETYTAMTFTLEVGQ 207

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
            V++K+L++ LV QQYKR D    RGTFR  GD+IEIFP+H ED AWRV+MFG+++E +S
Sbjct: 208 RVDEKQLIADLVAQQYKRNDQAFERGTFRRRGDTIEIFPAHYEDRAWRVTMFGDEVEALS 267

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
           EF  LTG+K  ++E IK+YANSH+VTPRPTL  A+  I++ELK RL  L   G+LLEAQR
Sbjct: 268 EFDTLTGKKTADLEMIKVYANSHHVTPRPTLRQAIIAIRQELKERLEWLTANGKLLEAQR 327

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
           LEQR T+DLEM+ETTGSC  IENYSRYL+GR  GEPPPT FEYIP+++LLF DESH T+P
Sbjct: 328 LEQRTTFDLEMIETTGSCAGIENYSRYLSGRKTGEPPPTFFEYIPDNALLFTDESHQTVP 387

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           QI  MY+GD +RK TLAEYGFRLPS +DNRPL+FEEW+ +RP ++ VSATP +WELE+  
Sbjct: 388 QIGAMYKGDRNRKWTLAEYGFRLPSALDNRPLKFEEWDAMRPQSVHVSATPANWELERAG 447

Query: 542 GIIVEQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           G+  EQ+IRPTGL+DPPVE+R       +QV+DV DEI    Q+G R L+TVLTK+MAED
Sbjct: 448 GVFAEQVIRPTGLIDPPVEVRPVSKDGASQVDDVVDEIRQTIQKGYRTLVTVLTKKMAED 507

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTEYL E+ IRVRYMHS+V T+ERIEIIRDLRLG FDVLVGINLLREGLDIPECGLVAIL
Sbjct: 508 LTEYLTEQGIRVRYMHSDVDTIERIEIIRDLRLGHFDVLVGINLLREGLDIPECGLVAIL 567

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           DADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S++ A+ ET RRREKQ  +N +
Sbjct: 568 DADKEGFLRSETSLIQTIGRAARNVDGKVILYADRVTGSMERAMAETARRREKQHAYNLE 627

Query: 718 HNINPQSVKEKIMEVID-PILLEDAATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAA 775
           H I P+SVK  I ++++ P    D     + + +      S    KA LK L  +M  AA
Sbjct: 628 HGITPESVKRDIKDILNSPYERGDRVLVPMGMSETDDRPFSGDNFKAALKDLEAKMREAA 687

Query: 776 DNLNFEEAARIRDEIKRLK 794
            NL FE AAR+RDEIKR+K
Sbjct: 688 ANLEFETAARLRDEIKRMK 706


>gi|86140157|ref|ZP_01058719.1| excinuclease ABC subunit B [Roseobacter sp. MED193]
 gi|85823094|gb|EAQ43307.1| excinuclease ABC subunit B [Roseobacter sp. MED193]
          Length = 741

 Score =  918 bits (2372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/655 (63%), Positives = 529/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F M T++ P+GDQP AIA+L +G+   E+ Q+LLG TG+GKTFTMAK+I   QRPAI++A
Sbjct: 38  FVMHTEFSPAGDQPTAIAELSEGVKEGERNQVLLGATGTGKTFTMAKIIAETQRPAIILA 97

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVS+YDYYQPEAYV R+DT+IEKES INEQIDRMRH
Sbjct: 98  PNKTLAAQLYGEFKGFFPDNAVEYFVSFYDYYQPEAYVARSDTFIEKESQINEQIDRMRH 157

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+++SVSCIYGIGSVE+YS M   LK+G+  +Q+++++ LV QQYKR 
Sbjct: 158 SATRALLERDDVIIIASVSCIYGIGSVETYSAMTQDLKVGEEYDQRQVMADLVAQQYKRN 217

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GD++EIFP+HLED AW++S FG ++E I+EF PLTG++    E I++Y
Sbjct: 218 DQAFQRGSFRVRGDTLEIFPAHLEDRAWKLSFFGEELEAITEFDPLTGERTGAFEQIRVY 277

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PTLN A+  IK+ELK RL +   EG+LLEAQRLEQR  +D+EMLE TG C 
Sbjct: 278 ANSHYVTPKPTLNQAVISIKQELKHRLDQFNGEGKLLEAQRLEQRCNFDIEMLEATGHCN 337

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GDF RK+TLAE+
Sbjct: 338 GIENYSRYLTGRGPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDFRRKSTLAEH 397

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE++Q  G+  EQ+IRPTGL++P +E
Sbjct: 398 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMDQAGGVFTEQVIRPTGLLEPEIE 457

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + QV+D+ DE+    + G+R L+T LTKRMAEDLTEYL+E+ I+VRYMHS++ TLE
Sbjct: 458 IRPVKMQVDDLLDEVRKVTENGMRTLVTTLTKRMAEDLTEYLHEQGIKVRYMHSDIDTLE 517

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAAR
Sbjct: 518 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAAR 577

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ A+ ET RRREKQ+ +N +H I P +VK+ + +V+  +   D
Sbjct: 578 NAEGRVIMYADKITGSMERALGETNRRREKQIAYNLEHGITPATVKKNVEDVLAGLYQGD 637

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++ +  +  +     +AHL  LR +M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 638 VDMNRVTANIDK-PMHGANLEAHLNGLRDEMRKAAENLEFEEAARLRDEVKRLEA 691


>gi|94498506|ref|ZP_01305062.1| excinuclease ABC subunit B [Sphingomonas sp. SKA58]
 gi|94422049|gb|EAT07094.1| excinuclease ABC subunit B [Sphingomonas sp. SKA58]
          Length = 757

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/695 (62%), Positives = 544/695 (78%), Gaps = 2/695 (0%)

Query: 101 PSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQL 160
           P   A+   I++D    + G+ + PHR  +    S+    F + +DY PSGDQP AIA+L
Sbjct: 26  PYQGAMTIQIRTDLSEPETGQSFVPHRP-ARPEKSEGGRPFTLVSDYEPSGDQPTAIAEL 84

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           +      EK Q+LLGVTGSGKTFTMAK IEA+QRPA+++APNKILAAQLY EFK+FFP N
Sbjct: 85  VAAARQGEKDQVLLGVTGSGKTFTMAKTIEALQRPALILAPNKILAAQLYGEFKSFFPDN 144

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
           AVEYFVSYYDYYQPEAYVPR+DTYIEKESS+NE IDRMRHSATR+LLER+D I+V+SVSC
Sbjct: 145 AVEYFVSYYDYYQPEAYVPRSDTYIEKESSVNESIDRMRHSATRALLERDDVIIVASVSC 204

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           +YGIGSVE+YS M   +K G   +Q+E++  LV  QYKR D G  RG FRV GD++E+FP
Sbjct: 205 LYGIGSVETYSAMTFSMKKGGVEDQREIIRKLVALQYKRNDAGFARGNFRVKGDNLEVFP 264

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
           SH ED AWRVS FGN+IE+I EF PLTG+KI +++ +K++ NSH+VTP PTL  AM+ I+
Sbjct: 265 SHYEDTAWRVSFFGNEIEDIVEFDPLTGKKIASLDYVKVFPNSHHVTPGPTLKQAMEAIR 324

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
            EL  RL EL  EG+LLEAQRLEQR  +DLEM+  TGSC  IENYSR+LTGR PGEPPPT
Sbjct: 325 FELAERLKELVAEGKLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPT 384

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           LFEY+PE+++LFVDESH T+PQI  M RGD  RK TLAEYGFRLPSC+DNRPLRF EW+ 
Sbjct: 385 LFEYLPENAVLFVDESHQTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDA 444

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           +RP T+ VSATPG+WE+EQ  G+  EQ+IRPTGL+DPPVEI+    QV+D+ +E    A 
Sbjct: 445 MRPQTVSVSATPGTWEMEQTGGVFSEQVIRPTGLIDPPVEIKPVEDQVDDLINECRKVAA 504

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           QG R L+T LTKRMAEDLTE+++E  I+VRYMHS+V+TLERIE+IRDLRLG +DVL+GIN
Sbjct: 505 QGYRTLVTTLTKRMAEDLTEFMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLIGIN 564

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           LLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARNV  +VILYAD IT S++ A
Sbjct: 565 LLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVEGRVILYADRITGSMERA 624

Query: 701 IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG 760
           ++ET+RRREKQ  +N +H I P ++K +I ++I  +  +D  T +  +D  +  +     
Sbjct: 625 LNETSRRREKQQAYNLEHGITPTTIKRQIGDIIAHVASKDQVTVDTGLD-DRPHMVGHNL 683

Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +A+++ L K+M  AA +L FEEA RIRDEI++L++
Sbjct: 684 RAYIEDLEKKMRAAAADLEFEEAGRIRDEIRKLEA 718


>gi|103485770|ref|YP_615331.1| excinuclease ABC subunit B [Sphingopyxis alaskensis RB2256]
 gi|98975847|gb|ABF51998.1| Excinuclease ABC subunit B [Sphingopyxis alaskensis RB2256]
          Length = 728

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/655 (66%), Positives = 528/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI +L++   + E+ Q+LLGVTGSGKTFTMAKVIE +QRPA+++A
Sbjct: 35  FELVSDYEPAGDQPTAIRELVETARTGERDQVLLGVTGSGKTFTMAKVIEELQRPALILA 94

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNKILAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESS+NE IDRMRH
Sbjct: 95  PNKILAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRH 154

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSC+YGIGSVE+YS MI  LK G   + +E++  LV  QYKR 
Sbjct: 155 SATRALLERDDVIIVASVSCLYGIGSVETYSAMIFDLKKGQVADNREIIRKLVALQYKRN 214

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GDS+EIFPSH ED+AWRVS FG++IEEI+EF PLTG+KI ++ +I+IY
Sbjct: 215 DQAFARGNFRVRGDSLEIFPSHYEDMAWRVSFFGDEIEEITEFDPLTGKKIASLNSIRIY 274

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP PTL  A + I+ EL  RL ELE EGRLLEAQRLEQR  +DLEM+  TGSC 
Sbjct: 275 ANSHYVTPGPTLKQATEAIRHELAERLKELEAEGRLLEAQRLEQRTNFDLEMIAATGSCA 334

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGEPPPTLFEY+P+++LLFVDESH TIPQI  M +GD  RK TLAEY
Sbjct: 335 GIENYSRFLTGRLPGEPPPTLFEYLPDNALLFVDESHQTIPQIGAMSKGDHRRKITLAEY 394

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPLRF EW+ +RP TI VSATPG+WE+E+ QG+  EQ+IRPTGL+DPPVE
Sbjct: 395 GFRLPSCIDNRPLRFAEWDMMRPQTISVSATPGTWEMERTQGVFAEQVIRPTGLIDPPVE 454

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A  G R L+T LTKRMAEDLTE+L+E  ++VRYMHS+V+TLE
Sbjct: 455 IRPVEEQVDDLIAEAKKTAAAGYRTLVTTLTKRMAEDLTEFLHEAGLKVRYMHSDVETLE 514

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAAR
Sbjct: 515 RIEIIRDLRLGVFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAAR 574

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +VILYAD IT S++ A+ ET RRREKQ  +N+ H I P ++K  I ++I  +  +D
Sbjct: 575 NVDGRVILYADRITGSMERALRETDRRREKQKAYNEAHGITPTTIKRNIGDIIAHVASKD 634

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               +I  D +   +     +A+++ L K+M  AA +L FEEA R+RDEI++L++
Sbjct: 635 GVVIDIGED-KPAHMVGHNLRAYIQELEKKMRDAAADLEFEEAGRLRDEIRKLEA 688


>gi|56695458|ref|YP_165806.1| excinuclease ABC subunit B [Ruegeria pomeroyi DSS-3]
 gi|56677195|gb|AAV93861.1| UvrABC system protein B [Ruegeria pomeroyi DSS-3]
          Length = 732

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/655 (64%), Positives = 525/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F MQT++ P+GDQP AIA+L +G++  E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 32  FVMQTEFQPAGDQPTAIAELTQGVNEGERNQVLLGATGTGKTFTMAKVIEETQRPAIILA 91

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVS+YDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 92  PNKTLAAQLYGEFKGFFPDNAVEYFVSFYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 151

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+++SVSCIYGIGSVE+Y  M   LK+G   +Q+++++ LV QQYKR 
Sbjct: 152 SATRALLERDDVIIIASVSCIYGIGSVETYGAMTQDLKVGGEYDQRQIMADLVAQQYKRN 211

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GDS+E++P+HLED AW++S FG ++E I+EF PLTGQK    + I++Y
Sbjct: 212 DQAFQRGSFRVRGDSLEVWPAHLEDRAWKLSFFGEELEAITEFDPLTGQKTDTFDQIRVY 271

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PT+  A+  IK+EL+ RL +L  EG+LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 272 ANSHYVTPKPTMQQAIIGIKQELRQRLDQLVGEGKLLEAQRLEQRTNFDLEMLEATGVCN 331

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+ +++F DESHV++PQI GMYRGD+ RK TLAE+
Sbjct: 332 GIENYSRYLTGRAPGEPPPTLFEFIPDHAIVFADESHVSVPQIGGMYRGDYRRKFTLAEH 391

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ  G+  EQ+IRPTGL+DP VE
Sbjct: 392 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMEQSGGVFTEQVIRPTGLLDPQVE 451

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DE+   A QG R L+T LTKRMAEDLTEYL+E+ I+VRYMHS++ TLE
Sbjct: 452 IRPVEMQVDDLLDEVRKMADQGFRTLVTTLTKRMAEDLTEYLHEQGIKVRYMHSDIDTLE 511

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 512 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 571

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ A+ ET RRR KQ+ +N++H I P +VK+ + +V+  +   D
Sbjct: 572 NAEGRVIMYADRITGSMERALGETDRRRAKQIAYNEEHGITPATVKKNVEDVLAGLYKGD 631

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              + ++    +  L     +A L  LR  M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 632 TDMSRVTAKIDK-PLHGGNLEAVLDGLRADMRKAAENLEFEEAARLRDEVKRLEA 685


>gi|149914354|ref|ZP_01902885.1| excinuclease ABC subunit B [Roseobacter sp. AzwK-3b]
 gi|149811873|gb|EDM71706.1| excinuclease ABC subunit B [Roseobacter sp. AzwK-3b]
          Length = 732

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/655 (63%), Positives = 528/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M T++ P+GDQP AIA+L  G+ S E+ Q+LLG TG+GKT+TMAKVIE  QRPAI++A
Sbjct: 32  FEMVTEFQPAGDQPTAIAELSSGVLSGERNQVLLGATGTGKTYTMAKVIEETQRPAIILA 91

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 92  PNKTLAAQLYGEFKGFFPNNAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 151

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   LK+G   +Q+++++ LV QQY+R 
Sbjct: 152 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLKVGTEYDQRKVMADLVAQQYRRN 211

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D G  RG+FRV GDS+EI+P+HL+D AW++S FG ++E I+EF PLTG+K  + E I++Y
Sbjct: 212 DAGFQRGSFRVRGDSLEIWPAHLDDRAWKLSFFGEELEAITEFDPLTGEKTDSFEQIRVY 271

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PT+  AM  I++EL+ RL +L  EG+LLEAQRLEQR ++DLEMLE TG C 
Sbjct: 272 ANSHYVTPKPTMQQAMIGIRKELRQRLDQLVAEGKLLEAQRLEQRTSFDLEMLEATGVCN 331

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+ +++F DESHV++PQI GMY+GD+ RK TLAE+
Sbjct: 332 GIENYSRYLTGRAPGEPPPTLFEFIPDTAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 391

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WE+EQ  G+  EQ+IRPTGL+DP +E
Sbjct: 392 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAKWEIEQTGGVFTEQVIRPTGLLDPQIE 451

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DE+   +  G R L T LTKRMAEDLTEYL+E+ IRVRYMHS++ T+E
Sbjct: 452 IRPVEMQVDDLLDEVRRVSAAGYRTLCTTLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIE 511

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 512 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 571

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S+Q A+DET RRR KQ+ +N++H I P +V++ + +++  +   D
Sbjct: 572 NADGRVIMYADRITGSMQRALDETDRRRAKQIAYNEEHGITPATVRKNVEDILAGLYKGD 631

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++    +  +     +AHL  LR +M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 632 VDMNRVTATVDK-PMVGSNLQAHLDGLRTEMRKAAENLEFEEAARLRDEVKRLEA 685


>gi|254419582|ref|ZP_05033306.1| excinuclease ABC, B subunit [Brevundimonas sp. BAL3]
 gi|196185759|gb|EDX80735.1| excinuclease ABC, B subunit [Brevundimonas sp. BAL3]
          Length = 780

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/678 (64%), Positives = 530/678 (78%), Gaps = 8/678 (1%)

Query: 123 WTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182
           W PHR    +   K    F+++T Y P+GDQPAAIA+L+    + ++ Q+LLGVTGSGKT
Sbjct: 62  WVPHRP--SHEGKKKGGRFRLETQYTPAGDQPAAIAELVAQAEAGDRDQVLLGVTGSGKT 119

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242
           FTMAKVIE  QRPA+++APNK LAAQLYSEFK+FFP NAVEYFVSYYDYYQPEAYVPRTD
Sbjct: 120 FTMAKVIEQTQRPALILAPNKTLAAQLYSEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTD 179

Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302
           TYIEK+SSINEQIDRMRHSATR++LER D IVV+SVSCIYGIGSVE+Y+ M   LK+GD 
Sbjct: 180 TYIEKDSSINEQIDRMRHSATRAILEREDVIVVASVSCIYGIGSVETYTAMTFTLKVGDQ 239

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
           +++ +L + L+  QYKR D+   RG FR  GD IEIFP HLED AWR+S+FG+++E I E
Sbjct: 240 IDEAKLRADLIALQYKRNDLNFDRGMFRKRGDVIEIFPVHLEDRAWRISLFGDELEAIQE 299

Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
           F PLTG+K  ++  I +YA SHYVTPRPTLN A + IK ELK  L  + + G+LLEAQRL
Sbjct: 300 FDPLTGKKTADLTEITVYAASHYVTPRPTLNQATQGIKAELKETLDWMIENGKLLEAQRL 359

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482
           EQR  +DLEM+E TGSC  IENYSR+LTGR PGEPPPT FEYIP+++LLFVDESHVTI Q
Sbjct: 360 EQRTRFDLEMMEATGSCAGIENYSRWLTGRAPGEPPPTFFEYIPDNALLFVDESHVTIGQ 419

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542
           I+GM+RGD+ RK+TLAEYGFRLPSC+DNRPL+FEEW  +RP T+ VSATPG+WE++Q  G
Sbjct: 420 INGMFRGDYRRKSTLAEYGFRLPSCIDNRPLKFEEWEAMRPQTVHVSATPGAWEMDQAGG 479

Query: 543 IIVEQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           + VEQ+IRPTGL+DPPVEIR      R QV+DV DE+    + G R L+T LTK+MAEDL
Sbjct: 480 VFVEQVIRPTGLIDPPVEIRPVSGQTRNQVDDVIDEVKATTRAGYRSLVTTLTKKMAEDL 539

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           TEY++E+ IRVRYMHS+V TLERIEI+RDLRLG FD L+GINLLREGLDIPECGLVAILD
Sbjct: 540 TEYMHEQGIRVRYMHSDVDTLERIEILRDLRLGSFDCLIGINLLREGLDIPECGLVAILD 599

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH 718
           ADKEGFLRS+TSLIQTIGRAARN++ +VILYAD +T S++ AI ET RRRE+Q+ +N +H
Sbjct: 600 ADKEGFLRSETSLIQTIGRAARNIDGRVILYADRMTGSMERAIAETDRRRERQMAYNTEH 659

Query: 719 NINPQSVKEKIMEVIDPIL--LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
            I P+SVK  I E++D      E    T   +            +A LK L  +M  AA 
Sbjct: 660 GITPESVKRDIKELMDSPYESREMDRLTRPGVAEASKPFVGSNFQAALKDLEGRMREAAS 719

Query: 777 NLNFEEAARIRDEIKRLK 794
           NL FEEA R+RDEIKR+K
Sbjct: 720 NLEFEEAGRLRDEIKRMK 737


>gi|126737418|ref|ZP_01753153.1| excinuclease ABC subunit B [Roseobacter sp. SK209-2-6]
 gi|126722003|gb|EBA18706.1| excinuclease ABC subunit B [Roseobacter sp. SK209-2-6]
          Length = 732

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/655 (64%), Positives = 526/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F M T + P+GDQP AIA+L +G+   E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 30  FVMNTTFDPAGDQPTAIAELSQGVLEGERNQVLLGATGTGKTFTMAKVIEETQRPAIILA 89

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP N+VEYFVS+YDYYQPEAYVPR+DTYIEKES INEQIDRMRH
Sbjct: 90  PNKTLAAQLYGEFKGFFPENSVEYFVSFYDYYQPEAYVPRSDTYIEKESQINEQIDRMRH 149

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+++SVSCIYGIGSVE+YS M   LK G+  +Q+++++ LV QQYKR 
Sbjct: 150 SATRALLERDDVIIIASVSCIYGIGSVETYSAMTQDLKAGEMYDQRQIMADLVAQQYKRN 209

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GD++EIFP+HLED AW++S FG ++E I+EF PLTG++    E I+IY
Sbjct: 210 DQAFQRGSFRVRGDTLEIFPAHLEDRAWKLSFFGEELEAITEFDPLTGERTGTFEQIRIY 269

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PTLN A+  IK+EL+ RL  L  +G+LLEAQRLEQR  +D+EMLE TG C 
Sbjct: 270 ANSHYVTPKPTLNQAVVSIKQELRQRLDNLVGDGKLLEAQRLEQRTNFDIEMLEATGHCN 329

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD  RK TLAE+
Sbjct: 330 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDHRRKFTLAEH 389

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WEL+Q  G+  EQ+IRPTGL+DP VE
Sbjct: 390 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPSGWELDQSGGVFAEQVIRPTGLLDPEVE 449

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + QV+D+ DEI   +  G R L+T LTKRMAEDLTEYL+E+ I+VRYMHS++ TLE
Sbjct: 450 IRPVKMQVDDLLDEIRKVSADGFRTLVTTLTKRMAEDLTEYLHEQGIKVRYMHSDIDTLE 509

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 510 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 569

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S++ A+ ET RRREKQ+ +N +H I P++VK+ + +V+  +   D
Sbjct: 570 NADGRVIMYADKITGSMERALGETNRRREKQIAYNLEHGITPETVKKNVEDVLAGLYEGD 629

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++    +  +     +AHL  LR +M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 630 VDMNRVTATVDK-PMHGANLEAHLAGLRDEMRKAAENLEFEEAARLRDEVKRLEA 683


>gi|119384328|ref|YP_915384.1| excinuclease ABC subunit B [Paracoccus denitrificans PD1222]
 gi|119374095|gb|ABL69688.1| Excinuclease ABC subunit B [Paracoccus denitrificans PD1222]
          Length = 741

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/655 (64%), Positives = 523/655 (79%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F M++++ P+GDQP AIA+L +G+ + E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 40  FVMRSEFQPAGDQPTAIAELSQGVRAGERDQVLLGATGTGKTFTMAKVIEQTQRPAIILA 99

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INE IDRMRH
Sbjct: 100 PNKTLAAQLYGEFKGFFPENAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEAIDRMRH 159

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+YS M   + +G   +Q+E L+ LV QQY+R 
Sbjct: 160 SATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDMVVGQLYDQREFLAELVAQQYRRL 219

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D     G FRV GD +E++P+HLED AWR   FGN++E I+EF PLTG K  + + I+IY
Sbjct: 220 DAAFQCGGFRVRGDLVEVWPAHLEDRAWRFDFFGNELESITEFDPLTGAKTDSFKQIRIY 279

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTPRPTL  A+K I+ EL+ RL +L  EG+LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 280 ANSHYVTPRPTLQQAIKGIRTELQTRLKQLADEGKLLEAQRLEQRTNFDLEMLEATGVCN 339

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRGDF RK TLAE+
Sbjct: 340 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRGDFRRKFTLAEH 399

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WEL+Q  G+  EQ+IRPTGL+DP VE
Sbjct: 400 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAQWELDQTGGVFTEQVIRPTGLLDPQVE 459

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DE+   A  G+R L+T LTKRMAEDLTEYL+E+ IRVRYMHS++ T+E
Sbjct: 460 IRPVEMQVDDLLDEVRKVAAAGMRTLVTTLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIE 519

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 520 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 579

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S++ A+ ET RRR+KQ+ +N+ H I PQ+V++ + +V+  +   D
Sbjct: 580 NADGRVIMYADRITGSMERAMAETERRRQKQVAYNEAHGITPQTVRKNVEDVLAGLWQGD 639

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                I+   ++  +      AHL +LR QM  AA+NL FEEAAR+RDE+KRL++
Sbjct: 640 TDQARITTRVEKPMVGANLA-AHLDALRAQMRKAAENLEFEEAARLRDEVKRLEA 693


>gi|83944406|ref|ZP_00956860.1| UvrABC system protein B [Sulfitobacter sp. EE-36]
 gi|83844729|gb|EAP82612.1| UvrABC system protein B [Sulfitobacter sp. EE-36]
          Length = 738

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/655 (64%), Positives = 527/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ T++ P+GDQP AI +L +G+ S E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 36  FKLATEFEPAGDQPTAIKELSEGVRSGERDQVLLGATGTGKTFTMAKVIEETQRPAIILA 95

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DT+IEKES INEQIDRMRH
Sbjct: 96  PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARSDTFIEKESQINEQIDRMRH 155

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+++SVSCIYGIGSVE+Y  M   LK G++ +Q+++++ L+ Q YKR 
Sbjct: 156 SATRALLERDDVIIIASVSCIYGIGSVETYGAMTQDLKTGNNYDQRQVIADLIAQAYKRN 215

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GDS+EIFP+HLED AWR+S FG ++E I+EF PLTG+K  + + I++Y
Sbjct: 216 DAAFQRGTFRVRGDSLEIFPAHLEDRAWRLSFFGEELESITEFDPLTGEKTGSFDQIRVY 275

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PT+N A+  IK+EL+MRL +L  EG+LLEAQRLEQR  +D+EMLE TG C 
Sbjct: 276 ANSHYVTPKPTMNQAVIGIKKELRMRLDQLVAEGKLLEAQRLEQRCNFDIEMLEATGVCN 335

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ RK TLAE+
Sbjct: 336 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 395

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ  G+  EQIIRPTGL+DP +E
Sbjct: 396 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEIEQSGGVFTEQIIRPTGLIDPKIE 455

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DE+   A  G R L TVLTKRMAEDLTEY++E+ IRVRYMHS++ T+E
Sbjct: 456 IRPVEMQVDDLLDEVRKVAADGYRTLCTVLTKRMAEDLTEYMHEQGIRVRYMHSDIDTIE 515

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 516 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 575

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ AI ET RRR KQL +N++H I P +VK+ + +++  +   D
Sbjct: 576 NAEGRVIMYADRITGSMERAIGETDRRRAKQLAYNEEHGITPTTVKKNVDDILAGLYKGD 635

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              + ++   +   L+    +  L  LR  M  AA+NL FEEAAR+RDE+KRL+S
Sbjct: 636 VDMSRVTAKIEN-PLAGGNLQTVLDGLRTDMRRAAENLEFEEAARLRDEVKRLES 689


>gi|83592469|ref|YP_426221.1| excinuclease ABC subunit B [Rhodospirillum rubrum ATCC 11170]
 gi|83575383|gb|ABC21934.1| Excinuclease ABC subunit B [Rhodospirillum rubrum ATCC 11170]
          Length = 733

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/657 (64%), Positives = 534/657 (81%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AIA+LL+G+ ++++ Q+LLGVTGSGKTFTMA+VI  M RP +++A
Sbjct: 38  FRLASDYQPAGDQPQAIAELLRGLAAQDRDQVLLGVTGSGKTFTMAQVIAEMGRPTLILA 97

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFKNFFP NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH
Sbjct: 98  PNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRH 157

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATR+LLER D I+V+SVSCIYGIGSVESYS+MI+ +K+G ++ + +LL +LV+ Q+ R 
Sbjct: 158 AATRALLERRDVIIVASVSCIYGIGSVESYSRMIIPIKVGTTLPRADLLKALVELQFTRN 217

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GDS+EIFP+H ED AWRVS++G++IE + EF PLTG+   +++ + +Y
Sbjct: 218 DIAFTRGMFRVRGDSVEIFPAHYEDRAWRVSLWGDEIESVREFDPLTGEITASLDEVTVY 277

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VTPRP L+ A++ IK ELK  L     +G++LEAQRLEQR T+DLEM+E TG C+
Sbjct: 278 PASHHVTPRPALSQAVRTIKAELKETLARFYDQGKVLEAQRLEQRTTFDLEMIEATGHCK 337

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
           SIENYSR+LTGR PG+PPPTLFEY+PED+LLFVDESHV +PQI GM+RGDF+RK+ LAE+
Sbjct: 338 SIENYSRHLTGRRPGDPPPTLFEYLPEDALLFVDESHVAVPQIGGMFRGDFNRKSVLAEF 397

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPL+FEEW+ +RP +I VSATPG WELE+  G++ EQ+IRPTGLVDP   
Sbjct: 398 GFRLPSCVDNRPLKFEEWDVMRPPSIFVSATPGRWELERTGGVVAEQVIRPTGLVDPVCI 457

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E+   A +G R+L+T LTKRM+EDLTEYL E+ +RVRYMHS+++TLE
Sbjct: 458 IRPVEAQVDDLLGEVKACAARGERVLVTTLTKRMSEDLTEYLTEQGVRVRYMHSDIETLE 517

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG FDVLVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 518 RIEIIRDLRLGAFDVLVGINLLREGLDIPECALVAILDADKEGFLRSRTSLIQTIGRAAR 577

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +VILYAD +T S+  AI+ET+RRR++Q ++N  H I P++V+ +I +V+  +  +D
Sbjct: 578 NVGGRVILYADKMTDSLTFAIEETSRRRQRQQDYNAAHGITPETVRSRISDVLSSVYEKD 637

Query: 741 --AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               TT +S D Q   L  K  + HL  L K+M  AA +L FEEA R+RDEI+RL++
Sbjct: 638 YVTVTTGVSGDNQ---LVGKSLREHLADLDKRMRAAAADLEFEEAGRLRDEIRRLEA 691


>gi|84683839|ref|ZP_01011742.1| excinuclease ABC subunit B [Maritimibacter alkaliphilus HTCC2654]
 gi|84668582|gb|EAQ15049.1| excinuclease ABC subunit B [Rhodobacterales bacterium HTCC2654]
          Length = 721

 Score =  914 bits (2363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/655 (63%), Positives = 530/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M T++ P+GDQP AIA+L  GI + E+ Q+LLG TG+GKT+TMAK+IE  QRPAI++A
Sbjct: 25  FRMNTEFKPAGDQPTAIAELSDGIKNGEQDQVLLGATGTGKTYTMAKIIEETQRPAIILA 84

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKES INEQIDRMRH
Sbjct: 85  PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESQINEQIDRMRH 144

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER+D I+++SVSCIYGIGS E+Y+ M   + +G+  +Q+ ++  LV QQY+R 
Sbjct: 145 SATRSLLERDDVIIIASVSCIYGIGSPETYTAMTQDITVGEEYDQRAMMKDLVAQQYRRN 204

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GDS+EI+PSHLED  WR+S FG ++E I+EF  LTG K  ++E +++Y
Sbjct: 205 DNAFDRGSFRVRGDSLEIWPSHLEDRGWRLSFFGEELESITEFDTLTGAKTDSLEKVRVY 264

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP PTL  A++ IK+EL +RL E EK+G+LLEAQRLEQR  +DLEMLE +G C 
Sbjct: 265 ANSHYVTPTPTLRQAIEGIKKELTLRLAEFEKDGKLLEAQRLEQRTRFDLEMLEASGFCN 324

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFEYIP+++++F DESHV++PQI GMYRGD+ RK TLAE+
Sbjct: 325 GIENYSRYLTGRAPGEPPPTLFEYIPDNAIVFADESHVSVPQIGGMYRGDYRRKFTLAEH 384

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATPG+WELE+  G+  EQ+IRPTGL+DP VE
Sbjct: 385 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPGNWELERTGGVFTEQVIRPTGLLDPQVE 444

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DE+   AQ G R L+T LTKRMAEDLTEY++E+ IRVRYMHS++ T+E
Sbjct: 445 IRPVEMQVDDLLDEVRKVAQAGYRTLVTTLTKRMAEDLTEYMHEQGIRVRYMHSDIDTIE 504

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 505 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 564

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S++ A+ ET RRR +Q+ +N++H I P +V++ + +V+  +   D
Sbjct: 565 NADGRVIMYADRITGSMERALAETDRRRARQIAYNEEHGITPATVRKNVEDVLAGLYAGD 624

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++    ++ + +   +AHL+ L++ M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 625 TDMNRVTATVDKVGIGQNL-QAHLEGLKEDMRKAAENLEFEEAARLRDEVKRLEA 678


>gi|83953447|ref|ZP_00962169.1| UvrABC system protein B [Sulfitobacter sp. NAS-14.1]
 gi|83842415|gb|EAP81583.1| UvrABC system protein B [Sulfitobacter sp. NAS-14.1]
          Length = 738

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/655 (64%), Positives = 526/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ T++ P+GDQP AI +L +G+ S E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 36  FKLATEFEPAGDQPTAIKELSEGVRSGERDQVLLGATGTGKTFTMAKVIEETQRPAIILA 95

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DT+IEKES INEQIDRMRH
Sbjct: 96  PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARSDTFIEKESQINEQIDRMRH 155

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+++SVSCIYGIGSVE+Y  M   LK G++ +Q+++++ L+ Q YKR 
Sbjct: 156 SATRALLERDDVIIIASVSCIYGIGSVETYGAMTQDLKTGNNYDQRQVIADLIAQAYKRN 215

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GDS+EIFP+HLED AWR+S FG ++E I+EF PLTG+K  + + I++Y
Sbjct: 216 DAAFQRGTFRVRGDSLEIFPAHLEDRAWRLSFFGEELESITEFDPLTGEKTGSFDQIRVY 275

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PT+N A+  IK+EL+MRL +L  EG+LLEAQRLEQR  +D+EMLE TG C 
Sbjct: 276 ANSHYVTPKPTMNQAVIGIKKELRMRLDQLVAEGKLLEAQRLEQRCNFDIEMLEATGVCN 335

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ RK TLAE+
Sbjct: 336 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 395

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ  G+  EQIIRPTGL+DP +E
Sbjct: 396 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEIEQSGGVFTEQIIRPTGLIDPKIE 455

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DE+   A  G R L TVLTKRMAEDLTEY++E+ IRVRYMHS++ T+E
Sbjct: 456 IRPVEMQVDDLLDEVRKVAADGYRTLCTVLTKRMAEDLTEYMHEQGIRVRYMHSDIDTIE 515

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 516 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 575

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ AI ET RRR KQL +N++H I P +VK+ + +++  +   D
Sbjct: 576 NAEGRVIMYADRITGSMERAIGETDRRRAKQLAYNEEHGITPTTVKKNVDDILAGLYKGD 635

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              + ++       L+    +  L  LR  M  AA+NL FEEAAR+RDE+KRL+S
Sbjct: 636 VDMSRVTAKIDN-PLAGGNLQTVLDGLRTDMRKAAENLEFEEAARLRDEVKRLES 689


>gi|294013266|ref|YP_003546726.1| excinuclease ABC subunit B [Sphingobium japonicum UT26S]
 gi|292676596|dbj|BAI98114.1| excinuclease ABC subunit B [Sphingobium japonicum UT26S]
          Length = 727

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/683 (63%), Positives = 540/683 (79%), Gaps = 4/683 (0%)

Query: 113 DNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQL 172
           D P  + G+ + PHR  +    S+    F++ +DY PSGDQP AIA+L++     EK Q+
Sbjct: 10  DEP--ETGEGFVPHRP-ARPEKSEGGRPFKLVSDYEPSGDQPTAIAELVETALQGEKDQV 66

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           LLGVTGSGKTFTMAKVIEA+QRPA+V+APNKILAAQLY EFK+FFP NAVEYFVSYYDYY
Sbjct: 67  LLGVTGSGKTFTMAKVIEALQRPALVLAPNKILAAQLYGEFKSFFPENAVEYFVSYYDYY 126

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           QPEAYVPR+DTYIEKESS+NE IDRMRHSATR+LLER+D ++V+SVSC+YGIGSVE+YS 
Sbjct: 127 QPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVLIVASVSCLYGIGSVETYSA 186

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
           M   +K G   +Q+E++  LV  QYKR D    RG FRV GD++EIFPSH ED AWRVS 
Sbjct: 187 MTFAMKKGQVEDQREIIRKLVALQYKRNDAAFARGNFRVKGDNLEIFPSHYEDTAWRVSF 246

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FGN+IE+I EF PLTG+K+ +++ +K++ NSH+VTP PTL  AM+ I+ EL  RL EL  
Sbjct: 247 FGNEIEDIVEFDPLTGKKVASLDYVKVFPNSHHVTPGPTLKQAMEAIRFELAERLKELTA 306

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           EG+LLEAQRLEQR  +DLEM+  TGSC  IENYSR+LTGR PGEPPPTLFEY+PE++LLF
Sbjct: 307 EGKLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLPENALLF 366

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           VDESH T+PQI  M RGD  RK TLAEYGFRLPSC+DNRPLRF EW+ +RP T+ VSATP
Sbjct: 367 VDESHQTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQTVSVSATP 426

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
           G WE+EQ  G   EQ+IRPTGL+DPPVEI+    QV+D+  E    A++G R L+T LTK
Sbjct: 427 GPWEMEQTGGAFSEQVIRPTGLIDPPVEIKPVEDQVDDLIHEAKETAKKGYRTLVTTLTK 486

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RMAEDLTE+++E  I+VRYMHS+V+TLERIE+IRDLRLG +DVLVGINLLREGLDIPECG
Sbjct: 487 RMAEDLTEFMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLVGINLLREGLDIPECG 546

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           LVAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD IT S++ A++ET+RRREKQ+
Sbjct: 547 LVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRITGSMERALNETSRRREKQM 606

Query: 713 EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMH 772
            +N +H I P ++K  I ++I  +  +D  T +  ++  +  L     +A+++ L K+M 
Sbjct: 607 AYNLEHGITPTTIKRNIGDIIAHVASKDQVTVDTGLE-DRPHLVGHNLRAYIEDLEKKMR 665

Query: 773 LAADNLNFEEAARIRDEIKRLKS 795
            AA +L FEEA RIRDEI++L++
Sbjct: 666 AAAADLEFEEAGRIRDEIRKLEA 688


>gi|110678580|ref|YP_681587.1| excinuclease ABC subunit B [Roseobacter denitrificans OCh 114]
 gi|109454696|gb|ABG30901.1| excinuclease ABC, B subunit [Roseobacter denitrificans OCh 114]
          Length = 732

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/657 (63%), Positives = 525/657 (79%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ TD+ P+GDQP AI +L  G+ S E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 32  FKLATDFEPAGDQPTAIKELAAGVLSGERDQVLLGATGTGKTFTMAKVIEETQRPAIILA 91

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVS+YDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 92  PNKTLAAQLYGEFKGFFPDNAVEYFVSFYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 151

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   LK G   +Q+++++ LV QQY+R 
Sbjct: 152 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLKTGRMYDQRQVMADLVAQQYRRN 211

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GDS+EIFP+HLED AW++S FG ++E I+EF PLTG+K    E I++Y
Sbjct: 212 DQSFQRGSFRVRGDSLEIFPAHLEDRAWKLSFFGEELESITEFDPLTGEKTNTFEQIRVY 271

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PT+  A+  IK+EL+ RL +L  +G+LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 272 ANSHYVTPKPTMQQAIISIKKELRTRLDQLVGDGKLLEAQRLEQRTNFDLEMLEATGVCN 331

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ RK TLAE+
Sbjct: 332 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 391

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE++Q  G+  EQIIRPTGL+DP +E
Sbjct: 392 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMDQTGGVFTEQIIRPTGLIDPEIE 451

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DE+   A  G R L+T LTKRMAEDLTEY++E+ IRVRYMHS++ TLE
Sbjct: 452 IRPVEMQVDDLLDEVRKVAADGFRTLVTTLTKRMAEDLTEYMHEQGIRVRYMHSDIDTLE 511

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQT GRAAR
Sbjct: 512 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTTGRAAR 571

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ AI+ET RRR KQ+ +N+KH I P +VK+ + +++  +   D
Sbjct: 572 NAEGRVIMYADRITGSMERAIEETNRRRAKQIAYNEKHGITPTTVKKNVEDILAGLYKGD 631

Query: 741 AATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              + ++  ID Q   ++    +A L  LR  M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 632 TDQSRVTAKIDKQ---MAGGNLQAVLDGLRTDMRKAAENLEFEEAARLRDEVKRLEA 685


>gi|114570710|ref|YP_757390.1| excinuclease ABC subunit B [Maricaulis maris MCS10]
 gi|114341172|gb|ABI66452.1| excinuclease ABC, B subunit [Maricaulis maris MCS10]
          Length = 721

 Score =  913 bits (2359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/692 (61%), Positives = 532/692 (76%), Gaps = 20/692 (2%)

Query: 123 WTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182
           WTPHR       S+    FQ  ++Y P GDQP AI +L+ G+   E+ Q+LLG TG+GKT
Sbjct: 30  WTPHRP-DRPEKSEGGQRFQCVSEYSPKGDQPQAIEELVAGLKDEERDQVLLGATGTGKT 88

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242
           FTMAK+IEA+QRPA+++APNK LAAQLY EFK+FFP+NAVEYFVSYYDYY PEAYVPRTD
Sbjct: 89  FTMAKIIEAVQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYMPEAYVPRTD 148

Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302
           TYIEKESSINE IDRMRH+ATRS+LER+D I+V+SVSCIYGIGSVE+Y+ M  +LK GD 
Sbjct: 149 TYIEKESSINEAIDRMRHAATRSILERDDVIIVASVSCIYGIGSVETYTAMTFELKPGDI 208

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
           V+ + +   LV  QY R D   IRGTFR+ GD++E+FP+H +D AWR+  FG+++E+I+E
Sbjct: 209 VDPRAITRQLVDLQYTRNDAAFIRGTFRIRGDNLEVFPAHYDDRAWRIGFFGDEVEQITE 268

Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
           F PLTG+ +  ++++K YANSHYVTPRPTLN A+  IK ELK RL  +E  G+LLEAQRL
Sbjct: 269 FDPLTGKTMTELKSVKFYANSHYVTPRPTLNQAVVKIKAELKERLAWMEANGQLLEAQRL 328

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482
           +QR  +DLEML  TGSC  IENYSRYLTGR PGEPPPTLFEYIPED+L+F DESHV+IPQ
Sbjct: 329 QQRTEFDLEMLGATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPEDALVFADESHVSIPQ 388

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542
           +  MY+GDF RK TL ++GFRLPSC+DNRPL+FEEW+ +RP TI VSATPG WEL Q  G
Sbjct: 389 LGAMYKGDFSRKKTLTDHGFRLPSCLDNRPLKFEEWDAMRPQTISVSATPGQWELNQTGG 448

Query: 543 IIVEQIIRPTGLVDPPVEIRSART----QVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           +  EQ+IRPTGL+DPPVEIR   T    QV+DV DE    A++G R L+T LTKRMAEDL
Sbjct: 449 VFTEQVIRPTGLIDPPVEIRPVSTDGASQVDDVIDEARATAEKGFRTLVTTLTKRMAEDL 508

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           TEY++E+ ++VRYMHS+V T+ERIE+IRDLRLG +DVL+GINLLREGLDIPECGLVAILD
Sbjct: 509 TEYMHEQGLKVRYMHSDVDTVERIELIRDLRLGVYDVLIGINLLREGLDIPECGLVAILD 568

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH 718
           ADKEGFLRS+TSL+QTIGRAARN +SKVILYAD IT S+Q A+DET RRR KQ+ HN++H
Sbjct: 569 ADKEGFLRSETSLVQTIGRAARNADSKVILYADRITGSMQRAMDETNRRRTKQIAHNEEH 628

Query: 719 NINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG---------------KAH 763
            I P ++   I ++++ ++   A    ++   ++    K KG                A 
Sbjct: 629 GITPTTITRGISDILEEVMESQAKGRGVAAKGRKKGDGKPKGLREADQAAFVAGDNVVAV 688

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +  L K+M  AA +L FEEAAR+RDE+ +L+ 
Sbjct: 689 IADLEKRMREAAADLEFEEAARLRDEVLKLRG 720


>gi|83859420|ref|ZP_00952941.1| excinuclease ABC subunit B [Oceanicaulis alexandrii HTCC2633]
 gi|83852867|gb|EAP90720.1| excinuclease ABC subunit B [Oceanicaulis alexandrii HTCC2633]
          Length = 711

 Score =  913 bits (2359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/686 (61%), Positives = 540/686 (78%), Gaps = 13/686 (1%)

Query: 123 WTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182
           WTPHR     + S+    F+M +DY P+GDQP AIA+L++GI  +E+ Q+LLGVTGSGKT
Sbjct: 26  WTPHRP-DRPDKSEGGQKFRMVSDYEPAGDQPHAIAELVEGISQQERDQVLLGVTGSGKT 84

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242
           FTMAKVIE +QRPA+++APNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVPRTD
Sbjct: 85  FTMAKVIEKVQRPALILAPNKTLAAQLYGEFKDFFPHNAVEYFVSYYDYYQPEAYVPRTD 144

Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302
           TYIEKES+INE IDRMRH+ATR++LER+D I+V+SVSCIYGIGSVE+Y+ M+  L++G  
Sbjct: 145 TYIEKESTINEAIDRMRHAATRAILERDDVIIVASVSCIYGIGSVETYTAMVFDLEVGAE 204

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
            + +E++  LV  QY R D    RGTFR+ GD +EIFP+H +  AWR+S FG++IE I E
Sbjct: 205 KDPREVMRDLVSLQYTRNDAAFQRGTFRLRGDVLEIFPAHYDARAWRISFFGDEIERIQE 264

Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
           F  LTG  I ++E +++YANSHYVTPRPTLN A+  IK+EL  RL  +E  G+LLEAQRL
Sbjct: 265 FEVLTGAPIGDLEKVRVYANSHYVTPRPTLNQAIVGIKKELAERLTWMEANGKLLEAQRL 324

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482
           +QR  +DLEMLE TGSC  IENYSRYLTGR PGEPPPT+FEY+P+++L+F+DESHVT+PQ
Sbjct: 325 QQRTEFDLEMLEATGSCMGIENYSRYLTGRKPGEPPPTMFEYLPDNALVFIDESHVTVPQ 384

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542
           +  MY+GDF+RK TLAE+GFRLPSCMDNRPL+FEEW  +RP T+ VSATPG WEL Q  G
Sbjct: 385 LGAMYKGDFNRKRTLAEHGFRLPSCMDNRPLKFEEWEAMRPQTLHVSATPGKWELNQTGG 444

Query: 543 IIVEQIIRPTGLVDPPVEIRSART----QVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           +  EQ+IRPTGL+DPPVE+R  +T    QV+D+ +E    A++G R L+T LTK+MAEDL
Sbjct: 445 VFTEQVIRPTGLIDPPVEVRPVQTETSSQVDDIIEEARKTAEKGYRTLITTLTKKMAEDL 504

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           TEY++E+ ++VRYMHS++ T+ERIE+IRDLRLG++DVLVGINLLREGLDIPECGLV ILD
Sbjct: 505 TEYMHEQGLKVRYMHSDIDTVERIELIRDLRLGEYDVLVGINLLREGLDIPECGLVGILD 564

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH 718
           ADKEGFLRS+TSL+QTIGRAARN +++VILYAD IT S++ A++ET RRREKQ+ HN++H
Sbjct: 565 ADKEGFLRSETSLVQTIGRAARNADARVILYADRITGSMERAMEETERRREKQIAHNQEH 624

Query: 719 NINPQSVKEKIMEVIDPILLEDAATTNISIDAQ--------QLSLSKKKGKAHLKSLRKQ 770
            I P++V   + +++  ++ E A       D +        Q        KA +  L K+
Sbjct: 625 GITPRTVTRGVSDILQGVMEETAKGRGSRRDKKRDRAVAEDQARFEPNNLKAAIADLEKR 684

Query: 771 MHLAADNLNFEEAARIRDEIKRLKSS 796
           M  AA +L FEEAAR+RDEIK+L+ +
Sbjct: 685 MREAAADLEFEEAARLRDEIKKLEGA 710


>gi|89069290|ref|ZP_01156653.1| UvrABC system protein B [Oceanicola granulosus HTCC2516]
 gi|89045166|gb|EAR51234.1| UvrABC system protein B [Oceanicola granulosus HTCC2516]
          Length = 731

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/655 (64%), Positives = 524/655 (80%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F M TD+  +GDQP AI +L  G+ S E+ Q+LLG TG+GKTFTMA++IE  QRPAI++A
Sbjct: 32  FVMHTDFEAAGDQPTAIGELTDGVLSGERDQVLLGATGTGKTFTMARIIEETQRPAIILA 91

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFP NAVEYFVS+YDYYQPEAYVPR+DTYIEKES IN+QIDRMRH
Sbjct: 92  PNKTLAAQLYGEFKSFFPDNAVEYFVSFYDYYQPEAYVPRSDTYIEKESMINDQIDRMRH 151

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   L +G   +Q+++++ L+ QQYKR 
Sbjct: 152 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLVVGREYDQRQVMADLITQQYKRN 211

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD++EIFP+HLED AW++S FG ++E I+EF PLTG++    + I++Y
Sbjct: 212 DQAFQRGTFRVRGDTLEIFPAHLEDRAWKLSFFGEELESITEFDPLTGERTGTFDKIRVY 271

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PTL  A+  IK+EL+ RL +L  EG+LLEAQRLEQR  +D+EM+E TG C 
Sbjct: 272 ANSHYVTPKPTLQQAVIEIKKELRARLDQLVGEGKLLEAQRLEQRTNFDIEMIEATGVCN 331

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRGD+ RK TLAE+
Sbjct: 332 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRGDYRRKFTLAEH 391

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WELEQ  G+  EQ+IRPTGL+DP VE
Sbjct: 392 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPADWELEQAGGVFTEQVIRPTGLLDPQVE 451

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+ DEI    QQG R L TVLTKRMAEDLTEYL+E+ I+VRYMHS++ TLE
Sbjct: 452 IRPVETQVDDLLDEIRRVTQQGFRTLCTVLTKRMAEDLTEYLHEQGIKVRYMHSDIDTLE 511

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 512 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 571

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ AI ET RRREKQ+ +N+ H I P +VK+ + +V+  +   D
Sbjct: 572 NAEGRVIMYADRITGSMERAIGETERRREKQIAYNEAHGITPATVKKNVEDVLAGLYKGD 631

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++  A+  + +    +A L  LR  M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 632 TDMARVT--AKIDTPTGANLQAVLDGLRADMRKAAENLEFEEAARLRDEVKRLET 684


>gi|159044735|ref|YP_001533529.1| excinuclease ABC subunit B [Dinoroseobacter shibae DFL 12]
 gi|157912495|gb|ABV93928.1| UvrABC system protein B [Dinoroseobacter shibae DFL 12]
          Length = 725

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/656 (64%), Positives = 525/656 (80%), Gaps = 1/656 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F+M T + P+GDQP AIA+L +G+ + E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++
Sbjct: 24  MFRMATSFEPAGDQPTAIAELSEGVRNGERDQVLLGATGTGKTFTMAKVIEQTQRPAIIL 83

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKES INEQIDRMR
Sbjct: 84  APNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESQINEQIDRMR 143

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   L  G S +Q+++++ LV QQY+R
Sbjct: 144 HSATRALLERDDVIIVASVSCIYGIGSVETYEAMTQDLVAGQSYDQRQIMADLVAQQYRR 203

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D G  RG+FRV GDS+EI+P+H+ED A + S FG ++E I+EF PLTG+K   ++ I+I
Sbjct: 204 NDAGFQRGSFRVRGDSLEIWPAHMEDRALKFSFFGEELESITEFDPLTGEKADTLDRIRI 263

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YANSHYVTPRPTL  A+  IK+EL++RL +L  EG+LLEAQRLEQR  +D+EMLE TG C
Sbjct: 264 YANSHYVTPRPTLQQAIVSIKKELRIRLDQLVAEGKLLEAQRLEQRTNFDIEMLEATGVC 323

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYLTGR PGEPPPTLFEYIP+++++F DESHV++PQI GMY+GDF RK TLAE
Sbjct: 324 NGIENYSRYLTGRAPGEPPPTLFEYIPDNAIVFADESHVSVPQIGGMYKGDFRRKMTLAE 383

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ  G+  EQ+IRPTGL+DP V
Sbjct: 384 HGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFTEQVIRPTGLLDPQV 443

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR    QV+D+ DE+      G R L+T LTKRMAEDLTEY++E+ I+VRYMHS++ TL
Sbjct: 444 EIRPVEMQVDDLLDEVRRVTADGFRTLVTTLTKRMAEDLTEYMHEQGIKVRYMHSDIDTL 503

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAA
Sbjct: 504 ERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAA 563

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD IT S++ A+ ET RRR KQ+ +N++H I P++VK+ + +V+  +   
Sbjct: 564 RNAEGRVIMYADRITGSMERALAETNRRRAKQIAYNEEHGITPETVKKNVEDVMAGLYQG 623

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           D     ++   ++  L     +  L+ LR  M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 624 DVDMNRVTAKVEK-PLHGGNLETVLEGLRADMRKAAENLEFEEAARLRDEVKRLEA 678


>gi|326389080|ref|ZP_08210662.1| excinuclease ABC subunit B [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206680|gb|EGD57515.1| excinuclease ABC subunit B [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 730

 Score =  912 bits (2356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/672 (64%), Positives = 527/672 (78%), Gaps = 5/672 (0%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFT 184
           PHR       S+    F + +DY PSGDQP AIA L+  I   ++ Q+LLGVTGSGKTFT
Sbjct: 24  PHRP----EKSEGGKPFTVVSDYQPSGDQPTAIADLVASIEDDDRTQVLLGVTGSGKTFT 79

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           MAKVIEA+QRPA+++APNKILAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DTY
Sbjct: 80  MAKVIEAVQRPALILAPNKILAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTY 139

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304
           IEKESS+NE IDRMRHSATR+LLER+D I+V+SVSC+YGIGSVE+YS M+  LK GD+V+
Sbjct: 140 IEKESSVNEAIDRMRHSATRALLERDDVIIVASVSCLYGIGSVETYSAMVFDLKKGDTVD 199

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
            +E++  LV  QYKR D    RG+FRV GD++EIFPSH ED+AWRVS FG++IEEI+EF 
Sbjct: 200 SREIIRKLVALQYKRNDHAFARGSFRVRGDNLEIFPSHYEDMAWRVSFFGDEIEEIAEFD 259

Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
           PLTG+    ++ +++YANSH+VTP PTL  AM  I+ EL  RL EL  EG LLEAQRLEQ
Sbjct: 260 PLTGKAGARLDRVRVYANSHHVTPGPTLKQAMDAIRFELSERLKELTSEGHLLEAQRLEQ 319

Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484
           R  +DLEM+  TGSC  IENYSR+LTGR PGEPPPTLFEY+PE++LLF+DESH TIPQI 
Sbjct: 320 RTNFDLEMMAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLPENALLFIDESHQTIPQIG 379

Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544
            M RGD  RK TLAEYGFRLPSC+DNRPLRF EW+ +RP T+ VSATPGSWE+EQ  G+ 
Sbjct: 380 AMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQTVAVSATPGSWEMEQSGGVF 439

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
            EQ+IRPTGL+DPPV IR    QV+D   E    A++G R L+T LTKRMAEDLTE+++E
Sbjct: 440 AEQVIRPTGLIDPPVFIRPVEDQVQDCIAECRATAEKGYRTLVTTLTKRMAEDLTEFMHE 499

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
             +RVRYMHS+V+TLERIE+IRDLRLG +DVLVGINLLREGLDIPECGLV ILDADKEGF
Sbjct: 500 AGLRVRYMHSDVETLERIELIRDLRLGVYDVLVGINLLREGLDIPECGLVCILDADKEGF 559

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
           LRS+TSLIQTIGRAARNV+ +VILYAD +T S++ AI ET RRR +Q  +N++H I P +
Sbjct: 560 LRSETSLIQTIGRAARNVDGRVILYADRMTGSMERAIAETDRRRARQQAYNEEHGITPAT 619

Query: 725 VKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           +K +I ++I      D     +  D +   L     +A+++ L K+M  AA +L FEEA 
Sbjct: 620 IKRQIADIIADTASRDGVVVELE-DEETTHLVGHNLRAYIEDLEKRMRAAAADLEFEEAG 678

Query: 785 RIRDEIKRLKSS 796
           R+RDEI+RL++S
Sbjct: 679 RLRDEIRRLEAS 690


>gi|149201065|ref|ZP_01878040.1| excinuclease ABC subunit B [Roseovarius sp. TM1035]
 gi|149145398|gb|EDM33424.1| excinuclease ABC subunit B [Roseovarius sp. TM1035]
          Length = 767

 Score =  912 bits (2356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/655 (63%), Positives = 523/655 (79%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ P+GDQP AIA+L +G++  E+ Q+LLG TG+GKTFTMAK+IEA QRPAI++A
Sbjct: 67  FLLASDFEPAGDQPTAIAELSQGLNEGERNQVLLGATGTGKTFTMAKIIEATQRPAIILA 126

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 127 PNKTLAAQLYGEFKGFFPENAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 186

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   L +G   +Q+ +++ LV QQY+R 
Sbjct: 187 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLTVGAQYDQRAIMADLVAQQYRRN 246

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GDS+EIFP+HLED AWR+S FG ++E I+EF PLTG+K    + I+IY
Sbjct: 247 DQAFQRGSFRVRGDSVEIFPAHLEDRAWRLSFFGEELEAITEFDPLTGEKTDTFDKIRIY 306

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PT+  A+  IK EL+MRL +L  EG+LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 307 ANSHYVTPKPTMQQAIIGIKRELRMRLDQLVNEGKLLEAQRLEQRTNFDLEMLEATGVCN 366

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+ +++F DESHV++PQI GMY+GD+ RK TLAE+
Sbjct: 367 GIENYSRYLTGRAPGEPPPTLFEFIPDTAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 426

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ  G+  EQ+IRPTGL+DP VE
Sbjct: 427 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMEQTGGVFTEQVIRPTGLLDPQVE 486

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+ DE+   A  G R+L+T LTKRMAEDLTEY++E+ IRVRYMHS++ T+E
Sbjct: 487 IRPVETQVDDLLDEVRRVAADGYRVLVTTLTKRMAEDLTEYMHEQGIRVRYMHSDIDTIE 546

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 547 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 606

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ A+ ET RRR+KQ+ +N+ H I P +V++ + +++  +   D
Sbjct: 607 NAEGRVIMYADRITGSMERALGETNRRRDKQIAYNEAHGITPATVRKNVEDILAGLYKGD 666

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++    +  L+     A L  LR  M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 667 VDMARVTAQVDK-PLAGANLAAVLDGLRADMRKAAENLEFEEAARLRDEVKRLEA 720


>gi|85706423|ref|ZP_01037517.1| excinuclease ABC subunit B [Roseovarius sp. 217]
 gi|85669196|gb|EAQ24063.1| excinuclease ABC subunit B [Roseovarius sp. 217]
          Length = 741

 Score =  912 bits (2356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/655 (64%), Positives = 522/655 (79%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T + P+GDQP AIA+L +GI   E+ Q+LLG TG+GKTFTMAK+IEA QRPAI++A
Sbjct: 41  FTLATTFEPAGDQPTAIAELSQGITEGERNQVLLGATGTGKTFTMAKIIEATQRPAIILA 100

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 101 PNKTLAAQLYGEFKGFFPENAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 160

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   LK+G+S +Q+ +++ LV QQYKR 
Sbjct: 161 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLKLGESYDQRAIMADLVAQQYKRN 220

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GDS+EIFP+HLED AWR+S FG ++E I+EF PLTG+K    E I+IY
Sbjct: 221 DHAFQRGSFRVRGDSVEIFPAHLEDRAWRLSFFGEELEAITEFDPLTGEKTDTFEKIRIY 280

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PT+  A+  IK EL+ RL +L  +G+LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 281 ANSHYVTPKPTMQQAIIGIKRELRQRLDQLVNDGKLLEAQRLEQRTNFDLEMLEATGVCN 340

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+ +++F DESHV++PQI GMY+GD+ RK TLAE+
Sbjct: 341 GIENYSRYLTGRAPGEPPPTLFEFIPDHAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 400

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WE+EQ  G+  EQ+IRPTGL+DP VE
Sbjct: 401 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAKWEIEQTGGVFTEQVIRPTGLLDPQVE 460

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DE+   A  G R L+T LTKRMAEDLTEY++E+ IRVRYMHS++ T+E
Sbjct: 461 IRPVDMQVDDLLDEVRRVAADGYRSLVTTLTKRMAEDLTEYMHEQGIRVRYMHSDIDTIE 520

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 521 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 580

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ A+ ET RRR+KQ+ +N+ H I P ++K+ + +++  +   D
Sbjct: 581 NAEGRVIMYADRITGSMERALGETNRRRDKQIAYNQAHGITPATIKKNVDDILQGLYKGD 640

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++    +  L+    +A L  LR+ M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 641 VDMARVTAKVDK-PLAGANLQAVLDGLRRDMRKAAENLEFEEAARLRDEVKRLEA 694


>gi|163794442|ref|ZP_02188413.1| Helicase subunit of the DNA excision repair complex [alpha
           proteobacterium BAL199]
 gi|159180166|gb|EDP64689.1| Helicase subunit of the DNA excision repair complex [alpha
           proteobacterium BAL199]
          Length = 739

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/656 (64%), Positives = 534/656 (81%), Gaps = 1/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +D+ P+GDQP AIA L+ G+ ++E  Q+LLGVTGSGKTFT+A VI+ ++RP +++A
Sbjct: 39  FQVVSDFEPAGDQPRAIADLIAGVQAQELDQVLLGVTGSGKTFTIAHVIQEVKRPTLILA 98

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFPHNAVEYFVSYYDYYQPEAYVPRTDT++EKESS+NEQIDRMRH
Sbjct: 99  PNKTLAAQLYGEMKSFFPHNAVEYFVSYYDYYQPEAYVPRTDTFVEKESSVNEQIDRMRH 158

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIG+VE+Y  MIV LK+GD++++  ++  LV+ QYKR 
Sbjct: 159 SATRALLERHDVIIVASVSCIYGIGAVETYGNMIVTLKVGDTIDRTNVMRRLVELQYKRN 218

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GDS+EIFP+HLED AWR+S+FG+++E I EF PLTG+K   +E I+++
Sbjct: 219 DASFHRGTFRVRGDSLEIFPAHLEDRAWRLSLFGDELEAIQEFDPLTGEKTAALEQIRVF 278

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PTL  A + IK ELK RL EL + G+LLEAQRLEQR T+DLEM+E TGSC 
Sbjct: 279 ANSHYVTPKPTLQQANRLIKVELKERLEELNRAGKLLEAQRLEQRTTFDLEMMEATGSCA 338

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRNPGEPPPTLFEY+PED+LL VDESHVT+PQI GM++GD+ RK TL+EY
Sbjct: 339 GIENYSRYLSGRNPGEPPPTLFEYLPEDALLVVDESHVTVPQIGGMFKGDYARKYTLSEY 398

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPL+FEEW  +RP T+ VSATPG WELE+  G+ VEQ++RPTGL+DP  E
Sbjct: 399 GFRLPSCLDNRPLKFEEWEDMRPQTVFVSATPGPWELERTGGVFVEQLVRPTGLIDPVCE 458

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + QV+DV  E + AA +G R+L+TVLTK+MAE LTEY+ E  I+VRY+HS+V TLE
Sbjct: 459 IRPTKNQVDDVIAECHDAAAKGHRVLITVLTKKMAEALTEYMNEAGIKVRYIHSDVDTLE 518

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG FDVL+GINLLREGLDIPEC LV ILDADKEG+LRSKTSL+QTIGRAAR
Sbjct: 519 RIEIIRDLRLGIFDVLIGINLLREGLDIPECALVCILDADKEGYLRSKTSLVQTIGRAAR 578

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ +V+LYAD IT S++ A+ ET RRR++Q+E+N  H I P+SVK+ I +++  +  E 
Sbjct: 579 NIDGRVLLYADRITASLEYALGETERRRQRQVEYNTAHGITPESVKKNIGDILSSV-YER 637

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                +    ++  L  K  +  ++ L  +M  AA +L FE+AAR+RDEIKRL+++
Sbjct: 638 GDHVTVDTGTEEGELVDKPIRQIIEELEARMKAAAADLEFEDAARLRDEIKRLEAA 693


>gi|148259176|ref|YP_001233303.1| excinuclease ABC subunit B [Acidiphilium cryptum JF-5]
 gi|326402329|ref|YP_004282410.1| UvrABC system protein B [Acidiphilium multivorum AIU301]
 gi|146400857|gb|ABQ29384.1| Excinuclease ABC subunit B [Acidiphilium cryptum JF-5]
 gi|325049190|dbj|BAJ79528.1| UvrABC system protein B [Acidiphilium multivorum AIU301]
          Length = 728

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/651 (64%), Positives = 529/651 (81%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           ++Y PSGDQP AIA L++G+   E+ Q+LLGVTGSGKTFTMAKVIE +QRPA+++APNK 
Sbjct: 30  SEYEPSGDQPGAIADLVRGVRQGERDQVLLGVTGSGKTFTMAKVIEQVQRPALILAPNKT 89

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
           LAAQLY+E K+FFP NAVEYFVSYYDYYQPEAYVPRTDTYIEK++ INE IDRMRH+AT+
Sbjct: 90  LAAQLYAEMKSFFPENAVEYFVSYYDYYQPEAYVPRTDTYIEKDAQINEAIDRMRHAATQ 149

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           +LLER D I+V+SVSCIYGIGSVE+YSQM+V+L++G S+++  L  +LV+ QY+R D   
Sbjct: 150 ALLERGDVIIVASVSCIYGIGSVETYSQMVVRLEVGGSIDRDRLAKALVELQYRRNDAAF 209

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            RGTFR+ G++++IFPS  ED AWRV++FG++IE I+EF PLTG+K+ ++  I IYANSH
Sbjct: 210 QRGTFRLRGETVDIFPSQYEDRAWRVTLFGDEIESIAEFDPLTGEKVTDLPAIAIYANSH 269

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
           YVTPRPTL  A+  IK EL+ RL E  + G+LLEA+RL+QR T+D+EM+ETTGSC+ IEN
Sbjct: 270 YVTPRPTLTQAIGKIKVELQQRLHEFTETGKLLEAERLQQRTTFDIEMMETTGSCKGIEN 329

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
           YSRYL+GRNPG+PPPTLFEY+P+++LL VDESHVT+PQI GM++GDF RK+ L+E+GFRL
Sbjct: 330 YSRYLSGRNPGDPPPTLFEYLPDNALLIVDESHVTVPQIGGMFKGDFARKSILSEFGFRL 389

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           PSC+DNRPL+FEEW   RP T+ VSATPG WE+E+  G+  EQ+IRPTGLVDP +++R  
Sbjct: 390 PSCIDNRPLKFEEWESFRPQTVFVSATPGPWEMERTGGVFAEQVIRPTGLVDPVIDVRPV 449

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             QV+D+  E    +Q G R+L+T LTKRMAEDLTEYL E  +RVRY+HS+V TLERIEI
Sbjct: 450 EHQVDDLLAECRATSQAGGRVLVTTLTKRMAEDLTEYLTENGVRVRYLHSDVDTLERIEI 509

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           IRDLRLG +DVLVGINLLREGLDIPEC LVAILDADKEGFLRS TSL+QTIGRAARNV+ 
Sbjct: 510 IRDLRLGAYDVLVGINLLREGLDIPECMLVAILDADKEGFLRSATSLVQTIGRAARNVDG 569

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
           +VILYADT+T+S++ AIDET RRR KQ   N+ H I PQSVK++I E++  +  +D  T 
Sbjct: 570 RVILYADTMTRSLKYAIDETERRRAKQTAWNEAHGITPQSVKKQIGEIMHSVYEQDYVTV 629

Query: 745 NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               D+       K  K+ +  L K+M  AA +L FEEAAR+RDEIKRL++
Sbjct: 630 APIRDSGATEFVGKDLKSTIAELEKRMRNAAADLEFEEAARLRDEIKRLEA 680


>gi|254452131|ref|ZP_05065568.1| excinuclease ABC, B subunit [Octadecabacter antarcticus 238]
 gi|198266537|gb|EDY90807.1| excinuclease ABC, B subunit [Octadecabacter antarcticus 238]
          Length = 739

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/657 (63%), Positives = 526/657 (80%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++TD+ P+GDQP AI +L +GI + E+ Q+LLG TG+GKTFTMAK+IE  QRPAI++A
Sbjct: 37  FVLKTDFEPAGDQPTAIKELCEGIRNGERDQVLLGATGTGKTFTMAKMIEKTQRPAIILA 96

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP  +VEYFVS+YDYYQPEAYV R+DT+IEKES INEQIDRMRH
Sbjct: 97  PNKTLAAQLYGEFKGFFPDASVEYFVSFYDYYQPEAYVARSDTFIEKESQINEQIDRMRH 156

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   L  G+   Q+++++ L+ Q YKR 
Sbjct: 157 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLHAGEEYNQRQIMTDLIAQAYKRN 216

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D G  RGTFRV GDS+E++P+HL+D AW++S FG ++E I+EF PLTG+K    E ++IY
Sbjct: 217 DAGFQRGTFRVRGDSLEVWPAHLDDRAWKLSFFGEELEAITEFDPLTGEKTDTFEKVRIY 276

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PT+  A+  IK+ELKMRL +L  EG+LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 277 ANSHYVTPKPTMKQAIVGIKKELKMRLDQLVNEGKLLEAQRLEQRCNFDLEMLEATGVCN 336

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GDF RK TLAE+
Sbjct: 337 GIENYSRYLTGRMPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDFRRKMTLAEH 396

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ  G+  EQIIRPTGL+DP +E
Sbjct: 397 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMEQTGGVFTEQIIRPTGLLDPMIE 456

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+DV DEI   + +G R L+T LTKRMAEDLTEYL+E  I+VRYMHS++ T+E
Sbjct: 457 IRPVDTQVDDVMDEIRRVSAKGFRTLVTTLTKRMAEDLTEYLHENGIKVRYMHSDIDTIE 516

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 517 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 576

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ AI ET RRR++Q+ +N+KH I P +VK+ + +++  +   D
Sbjct: 577 NAEGRVIMYADRITGSMERAIGETDRRRDRQIAYNEKHGITPTTVKKNVDDILAGLYKGD 636

Query: 741 AATTNI--SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                +  +IDA    L+    K  L+ LR  M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 637 VDMNRVTATIDA---PLAGANLKTVLQGLRTDMRKAAENLEFEEAARLRDEVKRLET 690


>gi|114770189|ref|ZP_01447727.1| excinuclease ABC subunit B [alpha proteobacterium HTCC2255]
 gi|114549026|gb|EAU51909.1| excinuclease ABC subunit B [alpha proteobacterium HTCC2255]
          Length = 727

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/655 (63%), Positives = 526/655 (80%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ + P+GDQP AI +L++G+   E+ Q+LLG TG+GKTFTMAK+IE  QRPAI++A
Sbjct: 25  FVLKSPFEPAGDQPVAINELVQGLADGEQNQVLLGATGTGKTFTMAKIIEQTQRPAIILA 84

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL+ EFKNFFP N+V+YFVS+YDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 85  PNKTLAAQLFGEFKNFFPDNSVQYFVSFYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 144

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATRSLLER+D I+V+SVSCIYGIGSVE+Y  M   L  G+   Q+++++ LV QQYKR 
Sbjct: 145 AATRSLLERDDVIIVASVSCIYGIGSVETYGAMTQDLISGNEYNQRQVMADLVAQQYKRN 204

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D G  RG+FRV GD++EI+P+HL+D  WR+S FG+++E I EF  LTG+K   +E++++Y
Sbjct: 205 DTGFSRGSFRVRGDTLEIWPAHLDDRGWRLSFFGDELEAIQEFDTLTGEKSALLESVRVY 264

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTPRPT+  AMK IK EL  RL +L  EG+LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 265 ANSHYVTPRPTMQQAMKGIKAELVTRLKQLNDEGKLLEAQRLEQRTNFDLEMLEATGVCN 324

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFEYIP+++++F DESHV +PQI GMYRGD+ RK TL+E+
Sbjct: 325 GIENYSRYLTGRAPGEPPPTLFEYIPDNAIVFADESHVAVPQIGGMYRGDYRRKITLSEH 384

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC DNRPL+FEEW+ +RP ++ VSATP  WELEQ  GI  EQIIRPTGL+DPP+E
Sbjct: 385 GFRLPSCTDNRPLKFEEWDAMRPQSVFVSATPQKWELEQSGGIFAEQIIRPTGLLDPPIE 444

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI +  +QG R+L+T LTKRM+EDLTEYL+E+ IRVRYMHS++ TLE
Sbjct: 445 IRPVDTQVDDLLSEIRIVIEQGNRVLVTTLTKRMSEDLTEYLHEQGIRVRYMHSDIDTLE 504

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSL+QTIGRAAR
Sbjct: 505 RIEILRDLRLGAFDVLIGINLLREGLDIPECSLVAILDADKEGFLRSETSLVQTIGRAAR 564

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+Y D +T S++ AI ET RRRE+Q+++N K+NI P+++K+ + +++      D
Sbjct: 565 NSEGRVIMYGDKVTGSMERAISETNRRRERQIKYNIKNNITPETIKKNVEDIMGGTFEGD 624

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              + I+    +  L     +AHL SLRK M  AA+NL FE+AARIRDE+KRL++
Sbjct: 625 TDESRITAKIDKKPLVGANLQAHLDSLRKDMIKAAENLEFEDAARIRDEVKRLEA 679


>gi|163735212|ref|ZP_02142647.1| excinuclease ABC subunit B [Roseobacter litoralis Och 149]
 gi|161391426|gb|EDQ15760.1| excinuclease ABC subunit B [Roseobacter litoralis Och 149]
          Length = 732

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/657 (63%), Positives = 524/657 (79%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ T++ P+GDQP AI +L  G+ + ++ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 32  FKLATEFEPAGDQPTAIKELAAGVRNGDRDQVLLGATGTGKTFTMAKVIEETQRPAIILA 91

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVS+YDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 92  PNKTLAAQLYGEFKGFFPENAVEYFVSFYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 151

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   LK G   +Q+++++ LV QQY+R 
Sbjct: 152 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLKTGQMYDQRQVMADLVAQQYRRN 211

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GDS+EIFP+HLED AW++S FG ++E I+EF PLTG+K    E I++Y
Sbjct: 212 DQSFQRGSFRVRGDSLEIFPAHLEDRAWKLSFFGEELEAITEFDPLTGEKTDTFEQIRVY 271

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PT+N A+  IK+EL+ RL +L  +G+LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 272 ANSHYVTPKPTMNQAIIGIKKELRTRLDQLVGDGKLLEAQRLEQRTNFDLEMLEATGVCN 331

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ RK TLAE+
Sbjct: 332 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 391

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ  G+  EQIIRPTGL+DP +E
Sbjct: 392 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEIEQTGGVFTEQIIRPTGLIDPEIE 451

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DE+   A  G R L+T LTKRMAEDLTEY++E+ IRVRYMHS++ TLE
Sbjct: 452 IRPVEMQVDDLLDEVRKVAADGFRTLVTTLTKRMAEDLTEYMHEQGIRVRYMHSDIDTLE 511

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQT GRAAR
Sbjct: 512 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTTGRAAR 571

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ AI ET RRR KQ+ +N+KH I P +VK+ + +++  +   D
Sbjct: 572 NAEGRVIMYADRITGSMERAIGETDRRRAKQVAYNEKHGITPTTVKKNVEDILAGLYKGD 631

Query: 741 AATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              + ++  ID Q   ++    +  L  LR  M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 632 TDQSRVTAKIDKQ---MAGGNLQTVLDGLRTDMRKAAENLEFEEAARLRDEVKRLEA 685


>gi|126730954|ref|ZP_01746763.1| excinuclease ABC subunit B [Sagittula stellata E-37]
 gi|126708670|gb|EBA07727.1| excinuclease ABC subunit B [Sagittula stellata E-37]
          Length = 731

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/660 (64%), Positives = 525/660 (79%), Gaps = 11/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F M T + P+GDQP AI +L  GI+  E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 31  FVMHTTFSPAGDQPTAITELTGGINEGERDQVLLGATGTGKTFTMAKVIEETQRPAIILA 90

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 91  PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 150

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   L +G   +Q+++++ L+ QQY+R 
Sbjct: 151 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLFVGKEYDQRKVMADLIAQQYRRN 210

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D G  RGTFRV GD +E++P+HLED AWR+S FG ++E + EF PLTG K    E I+IY
Sbjct: 211 DQGFSRGTFRVRGDVLEVWPAHLEDRAWRLSFFGEELEGLMEFDPLTGTKTDTFERIRIY 270

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTPRPT+  A++ IK+EL+ RL +L  E +LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 271 ANSHYVTPRPTMQQAIQGIKKELRQRLDQLVGEAKLLEAQRLEQRTNFDLEMLEATGVCN 330

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRGD+ RK TLAE+
Sbjct: 331 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRGDYRRKFTLAEH 390

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP +I VSATP +WELEQ  G+  EQ+IRPTGL+DP VE
Sbjct: 391 GFRLPSCMDNRPLKFEEWDAMRPQSIFVSATPAAWELEQSGGVFTEQVIRPTGLLDPQVE 450

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DEI   A  G R L TVLTKRMAEDLTEYL+E+ I+VRYMHS++ T+E
Sbjct: 451 IRPVEMQVDDLLDEIRKVAASGYRTLATVLTKRMAEDLTEYLHEQGIKVRYMHSDIDTIE 510

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 511 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 570

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD +T S++ AI ET RRREKQ+ +N++H I P++VK+ + +++  +   D
Sbjct: 571 NADGRVIMYADRMTGSMERAIGETNRRREKQIAYNEEHGITPETVKKNVDDILAGLYQGD 630

Query: 741 AATTNIS--IDAQQLSLSKKKG---KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              + ++  ID       K +G   +A L+ LR  M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 631 TDQSRVTAKID------PKHQGSNIQAVLEGLRNDMRKAAENLEFEEAARLRDEVKRLEA 684


>gi|163744636|ref|ZP_02151996.1| excinuclease ABC subunit B [Oceanibulbus indolifex HEL-45]
 gi|161381454|gb|EDQ05863.1| excinuclease ABC subunit B [Oceanibulbus indolifex HEL-45]
          Length = 734

 Score =  909 bits (2348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/681 (62%), Positives = 533/681 (78%), Gaps = 6/681 (0%)

Query: 115 PLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLL 174
           PLL N       R      HS     F++ T++ P+GDQP AI +L +G++S E+ Q+LL
Sbjct: 13  PLLANPAPDVRTRPKLEGGHS-----FKLVTEFAPAGDQPTAIKELTEGVNSGERDQVLL 67

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G TG+GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQP
Sbjct: 68  GATGTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQP 127

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           EAYV R+DT+IEKES INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y  M 
Sbjct: 128 EAYVARSDTFIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYGAMT 187

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             LK G+S +Q+++++ LV QQYKR D    RG+FRV GDS+EIFP+HL+D AWR+S FG
Sbjct: 188 QDLKAGESYDQRKVIADLVAQQYKRNDAAFQRGSFRVRGDSLEIFPAHLDDRAWRLSFFG 247

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
            ++E I+EF PLTG+K    + I++YANSHYVTP+PT++ A+  IK+EL+ RL +L  +G
Sbjct: 248 EELESITEFDPLTGEKTDTFDQIRVYANSHYVTPKPTMSQAIIGIKKELRTRLDQLVADG 307

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           +LLEAQRLEQR  +D+EMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F D
Sbjct: 308 KLLEAQRLEQRTNFDIEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFAD 367

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           ESHV++PQI GMY+GD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +
Sbjct: 368 ESHVSVPQIGGMYKGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAA 427

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           WE+EQ  G+  EQIIRPTGL+DP +EIR    QV+D+ DE+   A  G R L TVLTKRM
Sbjct: 428 WEIEQTGGVFTEQIIRPTGLIDPYIEIRPVEMQVDDLLDEVRKVAADGYRTLCTVLTKRM 487

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AEDLTEY++E+ IRVRYMHS++ T+ERIEI+RDLRLG FDVL+GINLLREGLDIPECGLV
Sbjct: 488 AEDLTEYMHEQGIRVRYMHSDIDTIERIEILRDLRLGAFDVLIGINLLREGLDIPECGLV 547

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
           AILDADKEGFLRS+TSLIQTIGRAARN + +VI+YAD IT S++ A+ ET RRR KQ+ +
Sbjct: 548 AILDADKEGFLRSETSLIQTIGRAARNADGRVIMYADRITGSMERAMGETDRRRAKQMAY 607

Query: 715 NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLA 774
           N++H I P +VK+ + +++  +   D     ++       L+    +  L  LR  M  A
Sbjct: 608 NEEHGITPATVKKNVDDILAGLYKGDVDMNRVTAKVDN-PLAGGNLQTVLDGLRTDMRKA 666

Query: 775 ADNLNFEEAARIRDEIKRLKS 795
           A+NL FEEAAR+RDE+KRL++
Sbjct: 667 AENLEFEEAARLRDEVKRLEA 687


>gi|83950333|ref|ZP_00959066.1| excinuclease ABC subunit B [Roseovarius nubinhibens ISM]
 gi|83838232|gb|EAP77528.1| excinuclease ABC subunit B [Roseovarius nubinhibens ISM]
          Length = 732

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/655 (63%), Positives = 528/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M T++  +GDQP AIA+L +G+   E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 32  FEMVTEFSAAGDQPTAIAELTQGVTEGERDQVLLGATGTGKTFTMAKVIEETQRPAIILA 91

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVPR+DT+IEKES INEQIDRMRH
Sbjct: 92  PNKTLAAQLYGEFKGFFPNNAVEYFVSYYDYYQPEAYVPRSDTFIEKESQINEQIDRMRH 151

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   LK+G   +Q+++++ LV QQY+R 
Sbjct: 152 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLKVGSDYDQRKVIADLVAQQYRRN 211

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D G  RG+FRV GDS+EI+P+HL+D AW++S FG ++E I+EF PLTG+K    + I++Y
Sbjct: 212 DHGFQRGSFRVRGDSLEIWPAHLDDRAWKLSFFGEELEAITEFDPLTGEKTDTFDQIRVY 271

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PT+  A+  IK+EL+ RL +L  EG+LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 272 ANSHYVTPKPTMQQAIIGIKKELRQRLDQLVGEGKLLEAQRLEQRCNFDLEMLEATGVCN 331

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRGD+ RK TLAE+
Sbjct: 332 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRGDYRRKFTLAEH 391

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ  G+  EQ+IRPTGL+DP +E
Sbjct: 392 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQTGGVFTEQVIRPTGLLDPQIE 451

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+ DE+   +  G R L T LTKRMAEDLTEY++E+ IRVRYMHS++ T+E
Sbjct: 452 IRPVETQVDDLLDEVRRVSAAGYRTLCTTLTKRMAEDLTEYMHEQGIRVRYMHSDIDTIE 511

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 512 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 571

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S++ A+ ET RRR KQ+ +N++H I P +VK+ + +++  +   D
Sbjct: 572 NADGRVIMYADRITGSMERAMGETERRRAKQIAYNEEHGITPATVKKNVEDILAGLYKGD 631

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              + ++    + SL     +  L+ LR  M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 632 TDQSRVTATIDK-SLHGGNLETVLEGLRADMRKAAENLEFEEAARLRDEVKRLEA 685


>gi|149186162|ref|ZP_01864476.1| excinuclease ABC subunit B [Erythrobacter sp. SD-21]
 gi|148830193|gb|EDL48630.1| excinuclease ABC subunit B [Erythrobacter sp. SD-21]
          Length = 731

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/655 (64%), Positives = 524/655 (80%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY PSGDQP AIA+L       E+ Q+LLGVTGSGKTFTMAKVIE +QRPA+++A
Sbjct: 36  FKLVSDYTPSGDQPTAIAELTASAREDEQTQVLLGVTGSGKTFTMAKVIEELQRPALILA 95

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNKILAAQL+ EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESS+NE IDRMRH
Sbjct: 96  PNKILAAQLFGEFKSFFPENAVEYFVSYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRH 155

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSC+YGIGSVE+YS MI  +    +V+Q+EL+  LV  QYKR 
Sbjct: 156 SATRALLERDDVIIVASVSCLYGIGSVETYSAMIFDIVKDSTVDQRELIRKLVALQYKRN 215

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D G  RG FRV GDS+EIFPSH ED+AWR+S FG++IEEISEF PLTG+K  +++ +++Y
Sbjct: 216 DAGFSRGNFRVRGDSLEIFPSHYEDMAWRISFFGDEIEEISEFDPLTGKKGASLDKVRVY 275

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP PT+  A + IK EL  RL EL ++GRLLEAQRLEQR  +DLEM+  TGSC 
Sbjct: 276 ANSHYVTPGPTMKQASEAIKFELTERLKELHEDGRLLEAQRLEQRTNFDLEMIAATGSCA 335

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGEPPPTLFEY+PE++LLFVDESH T+PQI  M +GD  RK TLAEY
Sbjct: 336 GIENYSRFLTGRLPGEPPPTLFEYLPENALLFVDESHQTVPQIGAMAKGDHRRKITLAEY 395

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPLRF EW+ +RP T  VSATPG+WE+EQ  G+  EQ+IRPTGL+DPPVE
Sbjct: 396 GFRLPSCIDNRPLRFNEWDAMRPQTFCVSATPGTWEMEQTGGVFAEQVIRPTGLIDPPVE 455

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+    QV+D  +E    A+ G R L+T LTKRMAEDLTE+++E  ++VRYMHS+V+TLE
Sbjct: 456 IKPVEDQVQDCIEECKKTAKMGYRTLVTTLTKRMAEDLTEFMHEAGVKVRYMHSDVETLE 515

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIE+IRDLRLG +DVLVGINLLREGLDIPECGLV ILDADKEGFLRS+TSL+QTIGRAAR
Sbjct: 516 RIELIRDLRLGVYDVLVGINLLREGLDIPECGLVCILDADKEGFLRSETSLVQTIGRAAR 575

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +VILYAD IT S++ A+ ET RRREKQ  +N++H I P+++K  I +++     +D
Sbjct: 576 NVEGRVILYADRITGSMERAMAETDRRREKQKAYNEEHGITPKTIKRNIADIVAHTAAQD 635

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T     D ++ +L     +A+++ L K+M  AA +L FEEA R+RDEI+ L++
Sbjct: 636 GVTVETG-DDERNNLVGHNLRAYIEDLEKRMRKAAADLEFEEAGRLRDEIRHLEN 689


>gi|114765085|ref|ZP_01444230.1| excinuclease ABC subunit B [Pelagibaca bermudensis HTCC2601]
 gi|114542489|gb|EAU45515.1| excinuclease ABC subunit B [Roseovarius sp. HTCC2601]
          Length = 732

 Score =  907 bits (2343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/659 (64%), Positives = 526/659 (79%), Gaps = 9/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F M T+++ +GDQP AIA+L  GI   E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 32  FVMHTEFNAAGDQPTAIAELSSGIDEGERNQVLLGATGTGKTFTMAKVIEETQRPAIILA 91

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP N+VEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 92  PNKTLAAQLYGEFKGFFPDNSVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 151

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER+D I+V+SVSCIYGIGSVE+Y  M   L  G   E +++++ LV QQY+R 
Sbjct: 152 SATRSLLERDDVIIVASVSCIYGIGSVETYGAMTQDLHAGSEYEMRKVMADLVTQQYRRN 211

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GDS+EI+P+HLED AWR+S FG ++E I+EF PLTGQK  + E I++Y
Sbjct: 212 DQAFQRGSFRVRGDSLEIWPAHLEDRAWRLSFFGEELEAITEFDPLTGQKTGSFERIRVY 271

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PT+N A+  IK+EL+ RL +L  EG+LLEAQRLEQR  +D+EMLE TG C 
Sbjct: 272 ANSHYVTPKPTMNQAVIQIKKELRQRLDQLVSEGKLLEAQRLEQRTNFDIEMLEATGVCN 331

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRGD+ RK TLAE+
Sbjct: 332 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRGDYRRKFTLAEH 391

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP +I VSATP +WELE+  G+  EQ+IRPTGL+DP VE
Sbjct: 392 GFRLPSCMDNRPLKFEEWDAMRPQSIFVSATPAAWELEESGGVFTEQVIRPTGLLDPQVE 451

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DEI    Q G R L TVLTKRMAEDLTEYL+E+ I+VRYMHS++ T+E
Sbjct: 452 IRPVEMQVDDLLDEIRKVTQDGYRTLCTVLTKRMAEDLTEYLHEQGIKVRYMHSDIDTIE 511

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 512 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 571

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ A+ ET RRR+KQ+ +N++H I P++VK+ + +++  +   D
Sbjct: 572 NAEGRVIMYADRITGSMERALAETDRRRQKQIAYNEEHGITPETVKKNVDDILAGLYQGD 631

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS----LRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++      ++  K+  A+L++    LR  M  AA+NL FEEAAR+RDEIKRL++
Sbjct: 632 VDMNRVTA-----TVDPKRQGANLETVLNGLRTDMRKAAENLEFEEAARLRDEIKRLEA 685


>gi|254488276|ref|ZP_05101481.1| excinuclease ABC, B subunit [Roseobacter sp. GAI101]
 gi|214045145|gb|EEB85783.1| excinuclease ABC, B subunit [Roseobacter sp. GAI101]
          Length = 738

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/655 (63%), Positives = 521/655 (79%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T++ P+GDQP AI +L +G+ S E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 36  FVLSTEFDPAGDQPTAIKELSEGVLSGERDQVLLGATGTGKTFTMAKVIEETQRPAIILA 95

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DT+IEKES INEQIDRMRH
Sbjct: 96  PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARSDTFIEKESQINEQIDRMRH 155

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+++SVSCIYGIGSVE+Y  M   LK G S +Q+++++ L+ Q YKR 
Sbjct: 156 SATRALLERDDVIIIASVSCIYGIGSVETYGAMTQDLKTGTSYDQRQVIADLIAQAYKRN 215

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GDS+EIFP+HLED AWR+S FG ++E I+EF PLTG+K    + I++Y
Sbjct: 216 DAAFQRGTFRVRGDSLEIFPAHLEDRAWRLSFFGEELESITEFDPLTGEKTGTFDQIRVY 275

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PT+N A+  IK+EL+MRL +L  EG+LLEAQRLEQR  +D+EMLE TG C 
Sbjct: 276 ANSHYVTPKPTMNQAVIGIKKELRMRLDQLVGEGKLLEAQRLEQRCNFDIEMLEATGVCN 335

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ RK TLAE+
Sbjct: 336 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 395

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ  G+  EQIIRPTGL+DP +E
Sbjct: 396 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEIEQTGGVFTEQIIRPTGLIDPMIE 455

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DE+   A  G R L TVLTKRMAEDLTEY++E+ IRVRYMHS++ T+E
Sbjct: 456 IRPVEMQVDDLLDEVRKVAADGYRTLCTVLTKRMAEDLTEYMHEQGIRVRYMHSDIDTIE 515

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 516 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 575

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ A+ ET RRR KQ+ +N+ H I P +VK+ + +++  +   D
Sbjct: 576 NAEGRVIMYADRITGSMERAMGETDRRRAKQVAYNELHGITPTTVKKNVDDILAGLYKGD 635

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++       L+    K  L  LR  M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 636 VDMNRVTAKIDN-PLAGGNLKTVLDGLRTDMRKAAENLEFEEAARLRDEVKRLEA 689


>gi|260427850|ref|ZP_05781829.1| excinuclease ABC, B subunit [Citreicella sp. SE45]
 gi|260422342|gb|EEX15593.1| excinuclease ABC, B subunit [Citreicella sp. SE45]
          Length = 732

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/657 (64%), Positives = 523/657 (79%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F M T++  +GDQP AIA+L  G+   E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++A
Sbjct: 32  FVMHTEFTAAGDQPTAIAELSSGVRDGERNQVLLGATGTGKTFTMAKVIEETQRPAIILA 91

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP N+VEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 92  PNKTLAAQLYGEFKGFFPDNSVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 151

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER+D I+V+SVSCIYGIGSVE+Y  M   L +G   E +++++ LV QQY+R 
Sbjct: 152 SATRSLLERDDVIIVASVSCIYGIGSVETYGAMTQDLHVGSEYEMRKIMADLVAQQYRRN 211

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GDS+EI+P+HLED AW++S FG ++E I+EF PLTG+K  + E I++Y
Sbjct: 212 DQAFQRGSFRVRGDSLEIWPAHLEDRAWKLSFFGEELEAITEFDPLTGEKTGSFERIRVY 271

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PT+N A+  IK+EL+ RL +L  EG+LLEAQRLEQR  +D+EMLE TG C 
Sbjct: 272 ANSHYVTPKPTMNQAVVQIKKELRQRLDQLVNEGKLLEAQRLEQRTNFDIEMLEATGVCN 331

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHVT+PQI GMYRGD+ RK TLAE+
Sbjct: 332 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVTVPQIGGMYRGDYRRKFTLAEH 391

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELE+  G+  EQ+IRPTGL+DP VE
Sbjct: 392 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPSAWELEEAGGVFTEQVIRPTGLLDPMVE 451

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DEI    + G R L TVLTKRMAEDLTEYL+E+ I+VRYMHS++ T+E
Sbjct: 452 IRPVEMQVDDLLDEIRKVTKDGFRTLCTVLTKRMAEDLTEYLHEQGIKVRYMHSDIDTIE 511

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 512 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 571

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ A+ ET RRREKQ+ +N++H I P +VK+ + +++  +   D
Sbjct: 572 NAEGRVIMYADRITGSMERAMAETDRRREKQVAYNEEHGITPATVKKNVDDILAGLYQGD 631

Query: 741 AATTNISIDAQQLSLSKKKG--KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++     +  S+  G  +A L  LR  M  AA+NL FEEAAR+RDEIKRL++
Sbjct: 632 VDMNRVT---ATIDSSRAGGNLEAVLDGLRTDMRKAAENLEFEEAARLRDEIKRLEA 685


>gi|84516968|ref|ZP_01004325.1| UvrABC system protein B [Loktanella vestfoldensis SKA53]
 gi|84509086|gb|EAQ05546.1| UvrABC system protein B [Loktanella vestfoldensis SKA53]
          Length = 748

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/661 (62%), Positives = 526/661 (79%), Gaps = 13/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++T++ P+GDQP AIA+L  GI + E+ Q+LLG TG+GKTFTMAK+IE  QRPAI++A
Sbjct: 48  FVLKTEFEPAGDQPTAIAELSAGILAGERDQVLLGATGTGKTFTMAKMIEQTQRPAIILA 107

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 108 PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 167

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   +  G S +Q+++++ L+ QQY+R 
Sbjct: 168 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDIHAGQSYDQRQIIADLIAQQYRRN 227

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GDS+E++P+HL+D AW++S FG ++E I+EF PLTG K    + ++IY
Sbjct: 228 DQAFQRGTFRVRGDSLEVWPAHLDDRAWKLSFFGEELESITEFDPLTGTKTGTFDKVRIY 287

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PT+  A+  IK+EL+MRL +L  EG+LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 288 ANSHYVTPKPTMQQAVIGIKKELRMRLDQLVAEGKLLEAQRLEQRTNFDLEMLEATGVCN 347

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GDF RK TLAE+
Sbjct: 348 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDFRRKMTLAEH 407

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ  G+  EQIIRPTGL+DP +E
Sbjct: 408 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMEQTGGVFTEQIIRPTGLIDPMIE 467

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+ DE+   A  G R L+T LTKRM+EDLTEY++E+ IRVRYMHS++ T+E
Sbjct: 468 IRPVETQVDDLLDEVRKVAAAGYRTLVTTLTKRMSEDLTEYMHEQGIRVRYMHSDIDTIE 527

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAAR
Sbjct: 528 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAAR 587

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ A+ ET RRR KQL +N+KH I P +VK+ + +++  +   D
Sbjct: 588 NAEGRVIMYADRITGSMERAMGETERRRTKQLAYNEKHGITPTTVKKNVEDILAGLYKGD 647

Query: 741 AATTNISIDAQQLSLSKKKGKAH------LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  +D  +++    KG+A       +  +R  M  AA+NL FEEAAR+RDE+KRL+
Sbjct: 648 -------VDMNRVTAKIDKGRAGGNIKTVIDGIRTDMRKAAENLEFEEAARLRDELKRLE 700

Query: 795 S 795
           +
Sbjct: 701 A 701


>gi|87200793|ref|YP_498050.1| excinuclease ABC subunit B [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136474|gb|ABD27216.1| Excinuclease ABC subunit B [Novosphingobium aromaticivorans DSM
           12444]
          Length = 747

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/656 (64%), Positives = 521/656 (79%), Gaps = 1/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AIA L++GI + +K Q+LLGVTGSGKTFTMA+VIEA QRPA+++A
Sbjct: 54  FRIVSDYQPAGDQPTAIADLVEGIRADDKTQVLLGVTGSGKTFTMAQVIEATQRPALILA 113

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNKILAAQLY E K+FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESS+NE IDRMRH
Sbjct: 114 PNKILAAQLYGEMKSFFPENAVEYFVSYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRH 173

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSC+YGIGSVE+YS MI  LK+G +V+  E++  LV  QYKR 
Sbjct: 174 SATRALLERDDVIIVASVSCLYGIGSVETYSAMIFDLKVGTTVDSGEIIRKLVALQYKRN 233

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD++EIFPSH EDVAWR+S FG++IE+I EF PLTG+    +  I++Y
Sbjct: 234 DAAFSRGNFRVRGDNLEIFPSHYEDVAWRISFFGDEIEQIVEFDPLTGKAGTKLTAIRVY 293

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP PT+  A   I+ EL  RL EL  EG+LLEAQRLEQR  +DLEM+  TGSC 
Sbjct: 294 ANSHYVTPGPTMKQAADAIRFELTERLKELVAEGKLLEAQRLEQRTNFDLEMIAATGSCA 353

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGEPPPTLFEY+P+++LLFVDESH T+PQI  M RGD  RK TLAEY
Sbjct: 354 GIENYSRFLTGRLPGEPPPTLFEYLPDNALLFVDESHQTVPQIGAMARGDHRRKLTLAEY 413

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPLRF EW+ +RP T+ VSATPG WE+EQ  G+  EQ+IRPTGL+DPPV 
Sbjct: 414 GFRLPSCIDNRPLRFNEWDAMRPQTVAVSATPGGWEMEQAGGVFAEQVIRPTGLIDPPVL 473

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D  +E    A +G R L+T LTKRMAEDLTE+++E  +RVRYMHS+V+TLE
Sbjct: 474 IRPVEDQVQDCINECRETAAKGYRTLVTTLTKRMAEDLTEFMHEAGLRVRYMHSDVETLE 533

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIE+IRDLRLG +DVLVGINLLREGLDIPECGLV ILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 534 RIELIRDLRLGVYDVLVGINLLREGLDIPECGLVCILDADKEGFLRSETSLIQTIGRAAR 593

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +VILYAD +T S++ AI ET RRR KQ  +N++H I PQ++K  I +++      D
Sbjct: 594 NVDGRVILYADRMTGSMERAIAETDRRRAKQQAYNEEHGITPQTIKRNIHDIVADTASRD 653

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
               +   D ++ +L     +A+++ L K+M  AA +L FEEA R+RDEI+RL+++
Sbjct: 654 GVVVDTG-DDERNNLVGHNLRAYIEDLEKRMRAAAADLEFEEAGRLRDEIRRLEAT 708


>gi|310815602|ref|YP_003963566.1| excinuclease ABC subunit B [Ketogulonicigenium vulgare Y25]
 gi|308754337|gb|ADO42266.1| excinuclease ABC subunit B [Ketogulonicigenium vulgare Y25]
          Length = 727

 Score =  905 bits (2340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/677 (63%), Positives = 525/677 (77%), Gaps = 16/677 (2%)

Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183
           TP R   +    +    F + T + P+GDQP+AIA+L+ GI S E  Q+LLG TG+GKTF
Sbjct: 15  TPQRREKLEGGKR----FVLNTSFDPAGDQPSAIAELVAGIDSGEHDQVLLGATGTGKTF 70

Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243
           TMA+VIE  QRPAI++A NK LAAQLY EFKNFFP NAVEYFVSYYDYYQPEAYV RTDT
Sbjct: 71  TMAQVIERTQRPAIILAHNKTLAAQLYGEFKNFFPENAVEYFVSYYDYYQPEAYVARTDT 130

Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303
           +IEKES INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+YS M   L +G + 
Sbjct: 131 FIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDLFVGQNY 190

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           + +++++ LV QQYKR D    RG+FRV GD +E++P+HLED AWR+S FG ++E I EF
Sbjct: 191 DMRQVINDLVAQQYKRNDQAFSRGSFRVRGDLLEVWPAHLEDRAWRMSFFGEELESIIEF 250

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
            PLTGQK  N   I+IYANSHYVTPRPT+N A+  IK EL+ RL +   EG+LLEAQRLE
Sbjct: 251 DPLTGQKTDNFTQIRIYANSHYVTPRPTMNQAVIGIKNELRQRLDQFTDEGKLLEAQRLE 310

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
           QR  +DLEMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHVT+PQI
Sbjct: 311 QRTRFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVTVPQI 370

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
             MYRGDF RK TLA++GFRLPSCMDNRPL+FEEW+ +RP ++ VSATPG WE+ Q  G+
Sbjct: 371 GAMYRGDFRRKTTLADHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPGPWEMGQTGGV 430

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
             EQIIRPTGL+DP V+IR    QV+D+  EI   +  G+R L TVLTKRMAEDLTEYL+
Sbjct: 431 FAEQIIRPTGLLDPLVDIRPVEMQVDDLLSEIRKVSAAGMRTLATVLTKRMAEDLTEYLH 490

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           E+ IRVRYMHS++ T+ERIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEG
Sbjct: 491 EQGIRVRYMHSDIDTIERIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEG 550

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           FLRS+TSL+QTIGRAARN   +VI+YAD IT S+Q A+ ET RRR++Q+ +N +H I PQ
Sbjct: 551 FLRSETSLVQTIGRAARNAEGRVIMYADRITGSMQRALAETDRRRQRQMAYNVEHGITPQ 610

Query: 724 SVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK-----AHLKSLRKQMHLAADNL 778
           SVK+ + +++         T     D  +++   K GK     A L+ LR  M  AA+NL
Sbjct: 611 SVKKNVEDIL-------FGTYQGDTDMSRVTAKIKPGKGGNLEAVLEGLRADMRKAAENL 663

Query: 779 NFEEAARIRDEIKRLKS 795
            FEEAAR+RDE+KRL++
Sbjct: 664 EFEEAARLRDEVKRLET 680


>gi|254437198|ref|ZP_05050692.1| excinuclease ABC, B subunit [Octadecabacter antarcticus 307]
 gi|198252644|gb|EDY76958.1| excinuclease ABC, B subunit [Octadecabacter antarcticus 307]
          Length = 735

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/655 (63%), Positives = 524/655 (80%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++T++ P+GDQP AI +L +GI + E+ Q+LLG TG+GKTFTMAK+IE  QRPAI++A
Sbjct: 34  FVLKTEFEPAGDQPTAIKELCEGIRNGERDQVLLGATGTGKTFTMAKMIEETQRPAIILA 93

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFP  AVEYFVS+YDYYQPEAYV R+DT+IEKES INEQIDRMRH
Sbjct: 94  PNKTLAAQLYGEFKSFFPEAAVEYFVSFYDYYQPEAYVARSDTFIEKESQINEQIDRMRH 153

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER+D I+V+SVSCIYGIGSVE+Y  M   L  G+   Q+++++ L+ Q YKR 
Sbjct: 154 SATRSLLERDDVIIVASVSCIYGIGSVETYGAMTQDLHTGEEYNQRQIMADLIAQAYKRN 213

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D G  RGTFRV GDS+E++P+HL+D AW++S FG ++E I+EF PLTG+K    E ++IY
Sbjct: 214 DAGFQRGTFRVRGDSLEVWPAHLDDRAWKLSFFGEELEAITEFDPLTGEKTDTFEKVRIY 273

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PT+  A+  IK+EL+MRL +   EG+LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 274 ANSHYVTPKPTMKQAVVGIKKELRMRLDQFVSEGKLLEAQRLEQRCNFDLEMLEATGVCN 333

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GDF RK TLAE+
Sbjct: 334 GIENYSRYLTGRMPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDFRRKMTLAEH 393

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ  G+  EQIIRPTGL+DP +E
Sbjct: 394 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMEQTGGVFTEQIIRPTGLIDPMIE 453

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+DV DEI   + +G R L+T LTKRMAEDLTEYL+E  I+VRYMHS++ T+E
Sbjct: 454 IRPVETQVDDVMDEIRRVSAKGFRTLVTTLTKRMAEDLTEYLHENGIKVRYMHSDIDTIE 513

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 514 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 573

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ A+ ET RRR++Q+ +N+KH I P +VK+ + +++  +   D
Sbjct: 574 NAEGRVIMYADRITGSMERAMGETDRRRDRQIAYNEKHGITPTTVKKNVEDILAGLYKGD 633

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++  A   + +    KA L  LR  M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 634 VDMNRVT--ATIDTPAGPNLKAVLDGLRVDMRKAAENLEFEEAARLRDEVKRLET 686


>gi|296282346|ref|ZP_06860344.1| excinuclease ABC subunit B [Citromicrobium bathyomarinum JL354]
          Length = 727

 Score =  905 bits (2338), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/655 (64%), Positives = 519/655 (79%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L++     EK Q+LLGVTGSGKTFTMAKVIE +QRPA+++A
Sbjct: 39  FELVSEYEPAGDQPTAIEELVREAEGGEKTQVLLGVTGSGKTFTMAKVIEELQRPALILA 98

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNKILAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESS+NE IDRMRH
Sbjct: 99  PNKILAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRH 158

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSC+YGIGSVE+YS MI  +K G+SV+Q+EL+  LV  QYKR 
Sbjct: 159 SATRALLERDDVIIVASVSCLYGIGSVETYSAMIFDIKQGESVDQRELIRKLVALQYKRN 218

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD++E+FPSHLED AWR+S FG+DIEEI EF PLTG+    ++ +++Y
Sbjct: 219 DVAFARGNFRVRGDNLELFPSHLEDTAWRISFFGDDIEEIVEFDPLTGKPGTKLDKVRVY 278

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP PT+  A + IK EL  RL ELE EG+LLE QRLEQR  +DLEM+  TGSC 
Sbjct: 279 ANSHYVTPGPTMKQAAEAIKFELAERLKELEAEGKLLEHQRLEQRTNFDLEMIAATGSCN 338

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGEPPPTLFEY+PE++LLFVDESH T+PQI  M RGD  RK TLAEY
Sbjct: 339 GIENYSRFLTGRLPGEPPPTLFEYLPENALLFVDESHQTVPQIGAMARGDHRRKITLAEY 398

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPLRF EW+ +RP T  VSATPG WELEQ  G+  EQ+IRPTGL+DPPVE
Sbjct: 399 GFRLPSCIDNRPLRFNEWDAMRPQTFAVSATPGGWELEQTGGVFAEQVIRPTGLIDPPVE 458

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D  +E    A +G R L+T LTKRMAEDLTE+++E  ++VRYMHS+V+TLE
Sbjct: 459 IRPVEDQVQDCIEECKATAAKGYRTLVTTLTKRMAEDLTEFMHEAGVKVRYMHSDVETLE 518

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIE+IRDLRLG +DVLVGINLLREGLDIPECGLV ILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 519 RIELIRDLRLGVYDVLVGINLLREGLDIPECGLVCILDADKEGFLRSETSLIQTIGRAAR 578

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +VILYAD IT S++ A+ ET RRREKQ  +N++H I P +++  I +    I    
Sbjct: 579 NVDGRVILYADRITGSMERAMAETERRREKQRAYNEEHGITPTTIRRAIAD----ITAHA 634

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               +   + +   L     +A+++ L K+M  AA NL FEEA R+RDEI+ L++
Sbjct: 635 TKGEDGEPEDEATPLVGHNLRAYIEDLEKKMREAAANLEFEEAGRLRDEIRALEA 689


>gi|329890749|ref|ZP_08269092.1| excinuclease ABC, B subunit [Brevundimonas diminuta ATCC 11568]
 gi|328846050|gb|EGF95614.1| excinuclease ABC, B subunit [Brevundimonas diminuta ATCC 11568]
          Length = 771

 Score =  904 bits (2336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/678 (63%), Positives = 531/678 (78%), Gaps = 8/678 (1%)

Query: 123 WTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182
           W PHR     N  +    F+++T Y P+GDQP+AIA+L+      ++ Q+LLGVTGSGKT
Sbjct: 54  WVPHRPDRPTNKKR--VPFRLETKYQPAGDQPSAIAELVAQAAEGDREQVLLGVTGSGKT 111

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242
           FTMAKVIE  QRPA+++A NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVPRTD
Sbjct: 112 FTMAKVIEQTQRPALILAHNKTLAAQLYSEFKAFFPDNAVEYFVSYYDYYQPEAYVPRTD 171

Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302
           TYIEK+SSINEQIDRMRH+ATR++LER+D IVV+SVSCIYGIGSVE+Y+ M   LK+GD 
Sbjct: 172 TYIEKDSSINEQIDRMRHAATRAILERDDVIVVASVSCIYGIGSVETYTAMTFNLKVGDQ 231

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
           +++ +L + L+  QYKR D+   RG FR  GD++EIFP HLED AWR+S+FG++IE I E
Sbjct: 232 IDEAKLRADLIALQYKRNDLHFERGMFRKRGDTLEIFPVHLEDRAWRISLFGDEIEAIDE 291

Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
           F PLTG+K   ++ + +YA SHYVTPRPTLN A+  IK ELK  L  + + G+LLEAQRL
Sbjct: 292 FDPLTGKKTNALDEVTVYAASHYVTPRPTLNQAVNGIKAELKETLDWMVENGKLLEAQRL 351

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482
           EQR  +DLEM+E TGSC  IENYSR+LTGR PGEPPPT FEYIP+++LLFVDESHVT+ Q
Sbjct: 352 EQRTRFDLEMMEATGSCAGIENYSRWLTGRAPGEPPPTFFEYIPDNALLFVDESHVTVGQ 411

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542
           I  M+RGD+ RK+TLAEYGFRLPS +DNRPL+FEEW+ +RP T+ VSATPG+WEL++  G
Sbjct: 412 IGAMFRGDYRRKSTLAEYGFRLPSAIDNRPLKFEEWDAMRPQTVFVSATPGAWELDKTGG 471

Query: 543 IIVEQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           +  EQ+IRPTGL+DPPVEIR    + R QV+DV DE+   A+ G R L+T LTK+MAEDL
Sbjct: 472 VFTEQVIRPTGLIDPPVEIRPVSGATRNQVDDVIDEVKATARAGYRSLVTTLTKKMAEDL 531

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           TEY++E+ +RVRYMHS+V TLERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILD
Sbjct: 532 TEYMHEQGVRVRYMHSDVDTLERIEILRDLRLGSFDVLIGINLLREGLDIPECGLVAILD 591

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH 718
           ADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD +T S++ AI ET RRREKQ  +N +H
Sbjct: 592 ADKEGFLRSETSLIQTIGRAARNVDGRVILYADRMTGSMERAIAETDRRREKQQAYNLEH 651

Query: 719 NINPQSVKEKIMEVID-PILLEDAA-TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
            I P++VK  I E+++ P    D    T   +  +         +A LK L  +M  AA 
Sbjct: 652 GITPETVKRDIKEILESPYESRDLDRLTRPGVAEEAKPFVGSNFQAALKDLEGRMRDAAA 711

Query: 777 NLNFEEAARIRDEIKRLK 794
           NL FEEAAR+RDEIK++K
Sbjct: 712 NLEFEEAARLRDEIKKMK 729


>gi|148557570|ref|YP_001265152.1| excinuclease ABC subunit B [Sphingomonas wittichii RW1]
 gi|148502760|gb|ABQ71014.1| Excinuclease ABC subunit B [Sphingomonas wittichii RW1]
          Length = 815

 Score =  903 bits (2334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/675 (63%), Positives = 537/675 (79%), Gaps = 2/675 (0%)

Query: 120 GKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGS 179
           G+ + PHR       ++    F++ +DY PSGDQP AIA+L     + E+ Q+LLGVTGS
Sbjct: 103 GQSFVPHRPERPEK-TEGGKPFKLVSDYEPSGDQPTAIAELAAQAAAGERDQVLLGVTGS 161

Query: 180 GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239
           GKTFTMAKV+E +QRPA+V+APNKILAAQLY EFK FFP NAVE+FVSYYDYYQPEAYVP
Sbjct: 162 GKTFTMAKVVEQLQRPALVLAPNKILAAQLYGEFKQFFPENAVEFFVSYYDYYQPEAYVP 221

Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
           R+DTYIEKESS+NE IDRMRHSATRSLLER+D ++V+SVSC+YGIGSVE+YS MI  LK 
Sbjct: 222 RSDTYIEKESSVNEAIDRMRHSATRSLLERDDVLIVASVSCLYGIGSVETYSAMIFDLKK 281

Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359
           G +V+Q+E++  LV  QYKR D    RG FRV GD++EIFPSH ED AWR++ FG++IEE
Sbjct: 282 GQTVDQREIIRKLVALQYKRNDAAFSRGNFRVRGDNLEIFPSHYEDSAWRIAFFGDEIEE 341

Query: 360 ISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419
           I EF PLTG+K  +++ ++++ANSHYVTP PT+  AM+ I+ EL  RL EL  EGRLLEA
Sbjct: 342 IVEFDPLTGKKAASLDHVRVFANSHYVTPGPTMKQAMEAIRFELTERLKELHAEGRLLEA 401

Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT 479
           QRLEQR  +DLEM+  TGSC  IENYSR+LTGR PGEPPPTLFEY+PE++LLFVDESH T
Sbjct: 402 QRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLPENALLFVDESHQT 461

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           I QI+GM RGD  RK TLAEYGFRLPSC+DNRPLRF EW  +RP T+ VSATPG WE+EQ
Sbjct: 462 IGQINGMSRGDHRRKITLAEYGFRLPSCIDNRPLRFSEWEVMRPQTVYVSATPGGWEMEQ 521

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
             G+  EQ+IRPTGL+DPPV+IR   +QV+D+  E    A+QG R L+T LTKRMAEDLT
Sbjct: 522 TGGVFTEQVIRPTGLIDPPVDIRPIESQVDDLVHEARETAKQGYRTLVTTLTKRMAEDLT 581

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           EYL+E  ++VRYMHS+V+TLERIE+IRDLRLG +DVLVGINLLREGLDIPECGLVAILDA
Sbjct: 582 EYLHEAGLKVRYMHSDVETLERIELIRDLRLGVYDVLVGINLLREGLDIPECGLVAILDA 641

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
           DKEGFLRS+TSLIQTIGRAARNV+ +VILYAD+IT S++ A+ ET+RRREKQ  +N++H 
Sbjct: 642 DKEGFLRSETSLIQTIGRAARNVDGRVILYADSITGSMERAMAETSRRREKQQAYNEEHG 701

Query: 720 INPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
           I P++++  I +++  +  +D  T +  I+ +   +     +A+++ L  +M  AA +L 
Sbjct: 702 ITPETIRRSITDIVGHLASKDQVTVDTGIEDRPHMVGHNL-RAYIEELEGKMRAAAADLE 760

Query: 780 FEEAARIRDEIKRLK 794
           FEEA R+RDEI++L+
Sbjct: 761 FEEAGRLRDEIRKLE 775


>gi|126733419|ref|ZP_01749166.1| excinuclease ABC, B subunit [Roseobacter sp. CCS2]
 gi|126716285|gb|EBA13149.1| excinuclease ABC, B subunit [Roseobacter sp. CCS2]
          Length = 736

 Score =  902 bits (2332), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/655 (63%), Positives = 522/655 (79%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T++ P+GDQP AI +L +GI + E+ Q+LLG TG+GKTFTMAK+IE  QRPAI++A
Sbjct: 34  FVLSTEFEPAGDQPTAIKELSEGIVNGERDQVLLGATGTGKTFTMAKMIEETQRPAIILA 93

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 94  PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 153

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   + +G   +Q+++++ L+ QQY+R 
Sbjct: 154 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDIHVGREYDQRKIMADLIAQQYRRN 213

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GDS+EI+P+HL+D AW++S FG ++E I+EF PLTG K    E +++Y
Sbjct: 214 DQAFQRGTFRVRGDSLEIWPAHLDDRAWKLSFFGEELETITEFDPLTGDKTDTFEKVRVY 273

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PT+N A+  IK+EL+MRL +L  EG+LLEAQRLEQR  +DLEMLE TG C 
Sbjct: 274 ANSHYVTPKPTMNQAVIGIKKELRMRLDQLVGEGKLLEAQRLEQRCNFDLEMLEATGVCN 333

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ RK TLAE+
Sbjct: 334 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 393

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ  G+  EQIIRPTGL+DP +E
Sbjct: 394 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFTEQIIRPTGLIDPEIE 453

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DE+   A  G R L+T LTKRMAEDLTEY++E+ I+VRYMHS++ T+E
Sbjct: 454 IRPVDMQVDDLLDEVRKVAADGYRTLVTTLTKRMAEDLTEYMHEQGIKVRYMHSDIDTIE 513

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QT GRAAR
Sbjct: 514 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTTGRAAR 573

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ AI ET RRR KQ+ +N++H I PQ+VK+ + +++  +   D
Sbjct: 574 NAEGRVIMYADRITGSMERAIKETDRRRAKQVAYNEEHGITPQTVKKNVEDILAGLYKGD 633

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++    +  ++     A L  LR  M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 634 VDMNRVTAKVDK-PMAGANLAAVLDGLRTDMRKAAENLEFEEAARLRDEVKRLET 687


>gi|58040289|ref|YP_192253.1| excinuclease ABC subunit B [Gluconobacter oxydans 621H]
 gi|58002703|gb|AAW61597.1| Excinuclease ABC subunit B [Gluconobacter oxydans 621H]
          Length = 759

 Score =  902 bits (2331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/655 (63%), Positives = 521/655 (79%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P+GDQP AIA+L++G+   E+ Q+LLGVTGSGKTF+MAKVIEA Q+P +++A
Sbjct: 57  FVVKSDYEPAGDQPTAIAELVQGVEGGERDQVLLGVTGSGKTFSMAKVIEATQKPTLILA 116

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK+S INEQIDRMRH
Sbjct: 117 PNKTLAAQLYGEMKQFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKDSQINEQIDRMRH 176

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++LLERND I+V+SVSCIYGIGSVE+YS+M+V+L++G S+++  L+ +LV+ QY+R 
Sbjct: 177 AATQALLERNDVIIVASVSCIYGIGSVETYSKMVVRLEVGGSIDRDRLIKALVELQYRRN 236

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP   ED AWRVS+FG++I++I EF PLTG K  ++  I +Y
Sbjct: 237 DAAFERGTFRVRGEQIDIFPVQNEDRAWRVSLFGDEIDQIVEFDPLTGNKTADLAEISVY 296

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTPRPTLN AM  IK EL+ RL +  +EG+LLEA+RL QR T+DLEM+ETTG+C+
Sbjct: 297 ANSHYVTPRPTLNQAMIGIKNELRQRLAQFTEEGKLLEAERLSQRTTFDLEMIETTGACK 356

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PG+PPPTLFEY+PED+LL VDESHVT+PQI GM RGD  RK+ L++Y
Sbjct: 357 GIENYSRYLSGRGPGDPPPTLFEYLPEDALLIVDESHVTVPQIGGMERGDRARKSVLSDY 416

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPL F EWN  RP +I VSATPG WE+EQ  G+  EQIIRPTGL+DP  +
Sbjct: 417 GFRLPSCIDNRPLAFGEWNAFRPQSIFVSATPGPWEMEQTGGVFAEQIIRPTGLIDPVTD 476

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  E   A  +G R+L+T LTKRMAEDLT+YL E  ++VRY+HS+V TLE
Sbjct: 477 VRPVEGQVDDLLHECREAISKGGRVLVTTLTKRMAEDLTDYLGEAGVKVRYLHSDVDTLE 536

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG FDVLVGINLLREGLDIPEC +VAILDADKEGFLRSKTSLIQTIGRAAR
Sbjct: 537 RIEIIRDLRLGAFDVLVGINLLREGLDIPECSVVAILDADKEGFLRSKTSLIQTIGRAAR 596

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V+LYAD +T S++ AI+ET RRR KQ E N+ H I P +V+ KI + +  +  +D
Sbjct: 597 NVDGRVLLYADKMTDSLKYAIEETARRRAKQTEWNEAHGITPMTVRSKIGDALSSVFEQD 656

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T              K   A ++ L K+M  AA NL+FE+AAR+RDE+KRL++
Sbjct: 657 YVTVAPDGSGDTEQFVGKSLPATIQDLEKRMREAAANLDFEQAARLRDEVKRLEA 711


>gi|255261669|ref|ZP_05341011.1| excinuclease ABC, B subunit [Thalassiobium sp. R2A62]
 gi|255104004|gb|EET46678.1| excinuclease ABC, B subunit [Thalassiobium sp. R2A62]
          Length = 727

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/655 (63%), Positives = 522/655 (79%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M TD+ P+GDQP AI +L  G++  E+ Q+LLGVTGSGKTFTMAKVIE  QRPAI++A
Sbjct: 25  FRMDTDFEPAGDQPTAIKELTTGVNEGERDQVLLGVTGSGKTFTMAKVIEETQRPAIILA 84

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DT+IEKES INEQIDRMRH
Sbjct: 85  PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARSDTFIEKESQINEQIDRMRH 144

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   +  G   +Q+++++ L+ QQYKR 
Sbjct: 145 SATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDIIAGQEYDQRKVIADLIAQQYKRN 204

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GDS+EIFP+HLED AW++S FG ++E I+EF PLTG+K    + I++Y
Sbjct: 205 DAAFQRGTFRVRGDSLEIFPAHLEDRAWKLSFFGEELESITEFDPLTGEKTGTFDKIRVY 264

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PT+  A+  IK+EL+MRL +L  EG+LLEAQRLEQR  +D+EMLE TG C 
Sbjct: 265 ANSHYVTPKPTMTQAVIGIKKELRMRLDQLVSEGKLLEAQRLEQRCNFDIEMLEATGVCN 324

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ RK TLAE+
Sbjct: 325 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 384

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP +I VSATP +WE+EQ  G+  EQ+IRPTGL+DP +E
Sbjct: 385 GFRLPSCMDNRPLKFEEWDAMRPQSIFVSATPAAWEIEQTGGVFAEQVIRPTGLLDPEIE 444

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DE+   A  G R L+T LTKRM+EDLTEY++E+ IRVRYMHS++ T+E
Sbjct: 445 IRPVEMQVDDLLDEVRKVAADGYRTLVTTLTKRMSEDLTEYMHEQGIRVRYMHSDIDTIE 504

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAAR
Sbjct: 505 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAAR 564

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S++ A+ ET RRR KQ  +N +H I P +VK+ + +++  +   D
Sbjct: 565 NADGRVIMYADRITGSMERAMGETNRRRVKQEAYNIEHGITPATVKKNVEDILAGLYKGD 624

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              + ++    +  L+    +  L+ LR  M  AA+NL FEEAA +RDE+KRL++
Sbjct: 625 TDQSRVTAQIDK-PLAGANLQTVLEGLRTDMRKAAENLEFEEAASLRDEVKRLET 678


>gi|209965175|ref|YP_002298090.1| excinuclease ABC, B subunit, putative [Rhodospirillum centenum SW]
 gi|209958641|gb|ACI99277.1| excinuclease ABC, B subunit, putative [Rhodospirillum centenum SW]
          Length = 778

 Score =  901 bits (2328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/651 (63%), Positives = 524/651 (80%), Gaps = 1/651 (0%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           +++ P+GDQP AIA+L +G+   E+ Q+LLGVTGSGKTFTMA VI+A+QRP +++APNK 
Sbjct: 51  SEFAPAGDQPRAIAELTEGLRRGERDQVLLGVTGSGKTFTMAHVIQALQRPTLILAPNKT 110

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
           LAAQLY E K+FFP NAVEYFVSYYDYYQPEAYVPRTDTYIEKES+INEQIDRMRH+ATR
Sbjct: 111 LAAQLYGEMKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKESTINEQIDRMRHAATR 170

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           +LLER D ++V+SVSCIYGIGSVE+Y  M V + +G ++ +++ L  LV+ QY+R D G 
Sbjct: 171 ALLERRDAVIVASVSCIYGIGSVETYQAMTVDVVVGQALHRQKFLQQLVELQYRRNDAGF 230

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            RGTFRV GD++E+FP+H+ED AWR S+FG+++E I EF PLTG+K   ++ ++IYANSH
Sbjct: 231 SRGTFRVRGDTVELFPAHMEDRAWRFSLFGDEVEAIHEFDPLTGEKQGALKEVRIYANSH 290

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
           YVTP+PTL  A++ IK +LK+RL E   EG+LLEAQRLEQR T+D+EM+  TGSC  IEN
Sbjct: 291 YVTPKPTLQQAVEQIKRDLKLRLEEFYAEGKLLEAQRLEQRTTFDIEMMAATGSCAGIEN 350

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
           YSRYL+GRNPGEPPPTLFEY+PED+LL VDESHV +PQI GM+RGDF RK+TLA++GFRL
Sbjct: 351 YSRYLSGRNPGEPPPTLFEYLPEDALLIVDESHVMVPQIGGMFRGDFMRKSTLADFGFRL 410

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           PSC DNRPL+FEEW+ +RP T+ VSATPG WELE+  G+ VEQ++RPTGLVDP V +R  
Sbjct: 411 PSCKDNRPLKFEEWDTMRPPTVFVSATPGPWELERTGGVFVEQVVRPTGLVDPEVIVRPT 470

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
            TQV+DV  E+     +GLR+L+T LTK+MAE LTEY+ E  I+VRY+HS+V+TLERIEI
Sbjct: 471 ETQVDDVMAEVREVVAKGLRVLVTTLTKKMAEALTEYMMEAGIKVRYIHSDVETLERIEI 530

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           IRDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEG+LRS+TSLIQTIGRAARN+  
Sbjct: 531 IRDLRLGVFDVLIGINLLREGLDIPECGLVAILDADKEGYLRSRTSLIQTIGRAARNLEG 590

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
           + ILYAD  T S++ A++ET RRR +QL +N +H I P+SV++ I +V+  +  E     
Sbjct: 591 RAILYADKETASMKAALEETARRRARQLAYNAEHGITPESVRKNIADVLGSV-YERGDRV 649

Query: 745 NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +   A    L+ K  KA +  L K+M  AA +L FE AA+IRDEI+RL++
Sbjct: 650 EVDTGAAGNLLAGKDIKAVIADLEKKMRTAAADLEFETAAKIRDEIRRLEA 700


>gi|288958421|ref|YP_003448762.1| excinuclease ABC subunit B [Azospirillum sp. B510]
 gi|288910729|dbj|BAI72218.1| excinuclease ABC subunit B [Azospirillum sp. B510]
          Length = 713

 Score =  900 bits (2327), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/655 (64%), Positives = 519/655 (79%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ PSGDQP AIA+L  G+   EK Q+LLGVTGSGKTFTMA VI+ +QRP +++A
Sbjct: 23  FVISSDFKPSGDQPTAIAELTAGLGQGEKDQVLLGVTGSGKTFTMAHVIQTVQRPTLILA 82

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH
Sbjct: 83  PNKTLAAQLYGEMKSFFPTNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 142

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+YS+M V L+ G+ + Q ELL  L + QYKR 
Sbjct: 143 SATRALLERDDVIIVASVSCIYGIGSVETYSEMTVDLRKGEVIAQPELLRKLTELQYKRN 202

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD++E+FP+H+ED AWR+S+FG++IE I E  PLTG+K+  +E +++Y
Sbjct: 203 DAAFGRGLFRVRGDTVELFPAHMEDRAWRISLFGDEIEGIHEIDPLTGEKLAALEAVRVY 262

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHYVTP+PTLN A+  IK++LK RL E   EG+LLEAQRLEQR T+D+EM+  TGSC 
Sbjct: 263 PNSHYVTPKPTLNQAISQIKKDLKERLEEFAAEGKLLEAQRLEQRTTFDIEMMAATGSCA 322

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFEY+P ++LL VDESHV +PQI GMYRGD  RK+TL++Y
Sbjct: 323 GIENYSRYLTGRAPGEPPPTLFEYLPAEALLIVDESHVMVPQIGGMYRGDLMRKSTLSDY 382

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEEW  +RP T+ VSATPG WELE+  G   EQ++RPTGL+DPPV 
Sbjct: 383 GFRLPSAKDNRPLKFEEWEGMRPQTVFVSATPGPWELERTGGAFTEQLVRPTGLIDPPVI 442

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E      +G R+L+T LTK+MAE LTEY++E  +RVRY+HS+V+TLE
Sbjct: 443 IRPTETQVDDLIGECKEVVAKGYRVLVTTLTKKMAEALTEYMHEAGLRVRYIHSDVETLE 502

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG +DVLVGINLLREGLDIPEC LVAILDADKEG+LRS+TSLIQTIGRAAR
Sbjct: 503 RIEIIRDLRLGAYDVLVGINLLREGLDIPECALVAILDADKEGYLRSRTSLIQTIGRAAR 562

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ + ILYAD IT S++ AIDET RRREKQ+ +N +H I P+SVK+ I ++++ +  E 
Sbjct: 563 NIDGRAILYADKITDSMKYAIDETARRREKQMAYNLEHGITPESVKKAIGDILESV-FER 621

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                +     +  L     KA +  L K+M  AA +L FEEAAR+RDE++RL++
Sbjct: 622 GDHVTVKTGLGKEELVGHNLKAVIADLEKRMRAAAADLEFEEAARLRDELRRLEA 676


>gi|114800055|ref|YP_761722.1| excinuclease ABC subunit B [Hyphomonas neptunium ATCC 15444]
 gi|114740229|gb|ABI78354.1| excinuclease ABC, B subunit [Hyphomonas neptunium ATCC 15444]
          Length = 681

 Score =  900 bits (2325), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/668 (62%), Positives = 530/668 (79%), Gaps = 15/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++  +Y P+GDQ  AI +L++GI + E+ Q+LLG TG+GKTFTMAK+IEA QRPA+++A
Sbjct: 9   FRVAAEYEPAGDQRTAIPELVEGITAGERDQVLLGATGTGKTFTMAKIIEATQRPALILA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFP N+VEYFVSYYDYYQPEAYVPR+D YIEKESSINE IDRMRH
Sbjct: 69  PNKTLAAQLYGEFKSFFPDNSVEYFVSYYDYYQPEAYVPRSDLYIEKESSINEAIDRMRH 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR++LER+D I+VSSVSC+YGIGSVESY+ M   LK GD ++ K++ + LV  QY R 
Sbjct: 129 SATRAILERDDVIIVSSVSCLYGIGSVESYTSMTFTLKAGDRIDPKQVTARLVANQYTRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD I+IFP+H ED AW++S FG+++E I+EF PLTG+ ++ +  +KIY
Sbjct: 189 DVAFGRGAFRVKGDVIDIFPAHYEDRAWKLSFFGDELESITEFDPLTGRTMQKLPQVKIY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSH+VTPRPTLN A++ IK ELK  +   EK G+LLEAQR+EQR TYDLEML  TGSC 
Sbjct: 249 ANSHHVTPRPTLNQAIEKIKAELKTTIAHFEKNGKLLEAQRIEQRCTYDLEMLAATGSCN 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFEY+PE++L+F DESH TIPQI  M++GDF RK+TLAEY
Sbjct: 309 GIENYSRYLTGRKPGEPPPTLFEYLPENALVFTDESHQTIPQIGAMFKGDFSRKSTLAEY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPL+F+EW+ +RP T+ VSATPG WE+E+  G+  EQ+IRPTGL+DPPVE
Sbjct: 369 GFRLPSCIDNRPLKFDEWDAMRPQTVHVSATPGKWEMERTGGVFTEQVIRPTGLIDPPVE 428

Query: 561 IR----SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           +R        QV+D+  E   AA  G+R L+T LTK+MAE+LT++L+E  ++VRYMHS+V
Sbjct: 429 VRPVSNDGANQVDDIMAEAKTAAANGMRTLITTLTKKMAENLTDFLHENGVKVRYMHSDV 488

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ERIEIIRDLRLG FDVLVGINLLREGLDIPECGLV ILDADKEGFLRS+TSL+QTIG
Sbjct: 489 DTIERIEIIRDLRLGVFDVLVGINLLREGLDIPECGLVGILDADKEGFLRSETSLVQTIG 548

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN ++KVILYAD +T S+Q A+DET+RRREKQ+ +N +H I P ++K  + +++  +
Sbjct: 549 RAARNADAKVILYADRVTGSMQRAMDETSRRREKQMAYNIEHGITPTTIKRAVSDILSEL 608

Query: 737 LLEDAATTN-------ISIDAQQLSLSKKKG---KAHLKSLRKQMHLAADNLNFEEAARI 786
             + +A+ +       +S + + L L  + G   KA + SL KQM  AA NL FE AAR+
Sbjct: 609 GEKPSASRSRRNRERGVS-EEKPLPLRGETGHNLKAAIASLEKQMREAAANLEFETAARL 667

Query: 787 RDEIKRLK 794
           RDE+KRL+
Sbjct: 668 RDEVKRLR 675


>gi|254460200|ref|ZP_05073616.1| excinuclease ABC, B subunit [Rhodobacterales bacterium HTCC2083]
 gi|206676789|gb|EDZ41276.1| excinuclease ABC, B subunit [Rhodobacteraceae bacterium HTCC2083]
          Length = 737

 Score =  898 bits (2321), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/655 (62%), Positives = 522/655 (79%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++++ P+GDQP AI +L +GI + E+ Q+LLG TG+GKTFTMAK+I+  QRPAI++A
Sbjct: 37  FELKSEFEPAGDQPTAIKELCEGIDAGERDQVLLGATGTGKTFTMAKMIQQTQRPAIILA 96

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL+ EFK FFP NAVEYFVS+YDYYQPEAYV R+DT+IEKES INEQIDRMRH
Sbjct: 97  PNKTLAAQLFGEFKGFFPENAVEYFVSFYDYYQPEAYVARSDTFIEKESQINEQIDRMRH 156

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+++SVSCIYGIGSVE+Y  M   L++G + +Q+ ++  LV QQYKR 
Sbjct: 157 SATRALLERDDVIIIASVSCIYGIGSVETYGAMTQDLEVGKNYDQRSVMQDLVAQQYKRN 216

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GDS+EIFP+HLED AW+ S FG+++E I EF PLTG+K    + +++Y
Sbjct: 217 DAAFARGSFRVRGDSLEIFPAHLEDRAWKFSFFGDELESIVEFDPLTGEKKDTKDRVRVY 276

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTP+PT+N A++ IK+EL+MRL +L  EG+LLEAQRLEQR  +D+EMLE TG C 
Sbjct: 277 ANSHYVTPKPTMNQAVQKIKQELRMRLDQLVAEGKLLEAQRLEQRTNFDIEMLEATGVCN 336

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ RK TLAE+
Sbjct: 337 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 396

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WELE   G+  EQIIRPTGL+DP VE
Sbjct: 397 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPSKWELEATGGVFTEQIIRPTGLLDPKVE 456

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+ DE+      G R L+T LTKRM+EDLTEY++E+ I+VRYMHS++ T+E
Sbjct: 457 IRPVDTQVDDLLDEVRKVTADGFRTLVTTLTKRMSEDLTEYMHEQGIKVRYMHSDIDTIE 516

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 517 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 576

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ A+ ET RRR KQ  +N +H I P +VK+ + +V+  +   D
Sbjct: 577 NAEGRVIMYADKITGSMERALGETDRRRAKQEAYNLEHGITPATVKKNVEDVLAGLYKGD 636

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++    +  L+    +A L  LR  M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 637 VDMNRVTAKIDK-PLAGANLQAVLDGLRVDMRKAAENLEFEEAARLRDEVKRLEA 690


>gi|162147890|ref|YP_001602351.1| excinuclease ABC subunit B [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542507|ref|YP_002274736.1| excinuclease ABC subunit B [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786467|emb|CAP56049.1| putative UvrABC system protein B [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209530184|gb|ACI50121.1| excinuclease ABC, B subunit [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 743

 Score =  897 bits (2317), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/653 (63%), Positives = 519/653 (79%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           +Q+ Y P+GDQP AI +L+ G+   E+ Q+LLGVTGSGKTFTMAK+IEA Q+P +++APN
Sbjct: 37  IQSPYEPAGDQPRAIGELVAGVEGGERDQVLLGVTGSGKTFTMAKIIEATQKPTLILAPN 96

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK+S INEQIDRMRH+A
Sbjct: 97  KTLAAQLYGEMKQFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKDSQINEQIDRMRHAA 156

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           T++LLERND I+V+SVSCIYGIGSVE+YS+M+V+L++G  +++  L+ +LV  QY+R D 
Sbjct: 157 TQALLERNDVIIVASVSCIYGIGSVETYSRMVVRLEVGGEIDRDRLVKALVDLQYRRNDA 216

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
              RGTFRV G+S+++FP   ED AWR+S+FG++I+ I+EF PLTG K  +++ + IYAN
Sbjct: 217 AFQRGTFRVRGESVDVFPVQNEDRAWRISLFGDEIDAITEFDPLTGDKTGDLQEVSIYAN 276

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+  IK EL+ RL +L +EG+LLEA+RL+QR T+DLEM+ETTG C+ I
Sbjct: 277 SHYVTPRPTLNQAVIGIKHELRQRLNDLTEEGKLLEAERLQQRTTFDLEMIETTGVCKGI 336

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYL+GR PG+PPPTLFEY+PED+LL VDESHVT+PQI GM RGDF RK+ L+E+GF
Sbjct: 337 ENYSRYLSGRQPGDPPPTLFEYLPEDALLIVDESHVTVPQIGGMERGDFARKSILSEFGF 396

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSC+DNRPL+F EW+  RP TI VSATPG WE+E+  G+  EQ+IRPTGL+DP  +IR
Sbjct: 397 RLPSCLDNRPLKFAEWDLFRPQTIFVSATPGPWEMERVGGVFAEQVIRPTGLIDPVTDIR 456

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
               QV+D+  E  L    G R+L+T LTKRMAEDLT+Y+ E  IRVRY+HS+V TLERI
Sbjct: 457 PVERQVDDLLAECRLTIAAGGRVLVTTLTKRMAEDLTDYMNEAGIRVRYLHSDVDTLERI 516

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSL+QTIGRAARNV
Sbjct: 517 EIIRDLRLGAFDVLIGINLLREGLDIPECSLVAILDADKEGFLRSRTSLVQTIGRAARNV 576

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + +V+LYAD +T S++ AI+ET RRREKQ   N  H I PQSV+++I E +  +  +D  
Sbjct: 577 DGRVVLYADKMTDSLRYAIEETARRREKQSAWNAAHGITPQSVRKQIGEALSSVFEQDYV 636

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           T   + D        K   + +  L K+M  AA +L FE AAR+RDEIKRL++
Sbjct: 637 TVAPTKDGDVAEFVGKDLGSAIAELEKRMRAAAADLEFETAARLRDEIKRLEA 689


>gi|296533738|ref|ZP_06896286.1| excision endonuclease subunit UvrB [Roseomonas cervicalis ATCC
           49957]
 gi|296265933|gb|EFH12010.1| excision endonuclease subunit UvrB [Roseomonas cervicalis ATCC
           49957]
          Length = 746

 Score =  896 bits (2316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/658 (63%), Positives = 522/658 (79%), Gaps = 4/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            Q+ + Y P+GDQPAAI QL++G+   E+ Q+LLGVTGSGKTFTMAKVIE +QRP +++A
Sbjct: 25  LQVVSPYEPAGDQPAAIGQLVEGLRQGERDQVLLGVTGSGKTFTMAKVIEHVQRPTLILA 84

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK++ INEQIDRMRH
Sbjct: 85  PNKTLAAQLYGEMKSFFPENAVEYFVSYYDYYQPEAYVPRSDTYIEKDAQINEQIDRMRH 144

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLERND I+V+SVSCIYGIGSVE YS M+++L++G  + +  LL +LV+QQY+R 
Sbjct: 145 SATQALLERNDVIIVASVSCIYGIGSVELYSNMVIKLQLGGRMARDVLLKALVEQQYRRN 204

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G++++++PSHLED AWR+S+FG++I+ + EF PLTG+    +E++ IY
Sbjct: 205 DAAFQRGTFRVRGETVDVWPSHLEDRAWRISLFGDEIDGLREFDPLTGEIAGEMESVAIY 264

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTPRPTL  A++ I+ ELK RL EL  EG+LLEAQRLEQR T+DLEM+ETTGSC+
Sbjct: 265 ANSHYVTPRPTLLQAIRDIRVELKQRLEELNAEGKLLEAQRLEQRTTFDLEMMETTGSCK 324

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PG+PPPTLFEY+PE++LL VDESHVT+PQI GMYRGDF RK  L+E+
Sbjct: 325 GIENYSRYLSGRGPGQPPPTLFEYLPENALLVVDESHVTVPQIGGMYRGDFARKTILSEF 384

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+  RP T+ VSATPG WE+E+  G+  EQ+IRPTGL DP  E
Sbjct: 385 GFRLPSCMDNRPLKFEEWDSFRPDTLFVSATPGGWEMERSGGVFAEQVIRPTGLTDPVCE 444

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E     QQG R+L+T LTKRMAEDLTEY+ E  I+VRY+HS+V TLE
Sbjct: 445 IRPVEGQVDDLLAECRTVMQQGGRVLVTTLTKRMAEDLTEYMTEAGIKVRYLHSDVDTLE 504

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR G FDVLVGINLLREGLDIPEC LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 505 RIEIIRDLRKGVFDVLVGINLLREGLDIPECALVAILDADKEGFLRSTTSLIQTIGRAAR 564

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +V+LYAD +T S++ A++ET RRR KQ  +N +H I PQ+++ +I +V+  +  +D
Sbjct: 565 NAEGRVVLYADRMTDSLKRALEETDRRRAKQQAYNAEHGITPQTIRRQISDVLQSVYEQD 624

Query: 741 ---AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               A T    D        K  +A +  L ++M  AA +L FE AAR+RDEIKRL++
Sbjct: 625 YVTVAPTAAEADGPA-EFVGKDLRASIAELERKMRAAAADLEFETAARLRDEIKRLEN 681


>gi|260575335|ref|ZP_05843335.1| excinuclease ABC, B subunit [Rhodobacter sp. SW2]
 gi|259022595|gb|EEW25891.1| excinuclease ABC, B subunit [Rhodobacter sp. SW2]
          Length = 726

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/655 (63%), Positives = 517/655 (78%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + P+GDQP AIA+L  GI + E  Q+LLG TG+GKTFTMAKVIEA QRPAI++A
Sbjct: 27  FVLASPFQPAGDQPTAIAELTAGIDAGEHDQVLLGATGTGKTFTMAKVIEATQRPAIILA 86

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INEQIDRMRH
Sbjct: 87  PNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRH 146

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER+D I+V+SVSCIYGIGSVE+YS M   L +G   + + ++S LV Q ++R 
Sbjct: 147 SATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDLIVGQPYDLRGIMSELVAQAFRRN 206

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV GDS+E++P+HLED AWR S FG+ +E I+EF PLTG K  + + I+IY
Sbjct: 207 DQAFQRGSFRVRGDSLEVWPAHLEDRAWRFSFFGDQLEAITEFDPLTGAKTDSFKQIRIY 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTPRPT+  A+  IK+EL+  L  +   G+LLEAQRLEQR ++DLEMLE TG C 
Sbjct: 267 ANSHYVTPRPTMQQAILGIKKELRQTLDLMVLNGKLLEAQRLEQRTSFDLEMLEATGVCN 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ RK TLAE+
Sbjct: 327 GIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYRRKFTLAEH 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP TI VSATP +WELEQ  G   EQ+IRPTGL+DP +E
Sbjct: 387 GFRLPSCMDNRPLKFEEWDAMRPRTIFVSATPAAWELEQSGGTFAEQVIRPTGLLDPVIE 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ DEI   A  GLR+L+T LTKRMAEDLTEY +E+ IR+RYMHS++ T+E
Sbjct: 447 IRPVEMQVDDLLDEIRKVALLGLRVLVTTLTKRMAEDLTEYFHEQGIRIRYMHSDIDTIE 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 507 RIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + + I+YAD IT S++ AI ET RRR+KQ+ +N  H+I P ++++ + +V+  +   D
Sbjct: 567 NSDGRAIMYADRITGSMERAIGETNRRRDKQIAYNTAHDITPTTIRKNVEDVLAGLWQGD 626

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              + ++    +  +      AHL SLR  M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 627 TDQSRVTAKVDKPMVGANLA-AHLDSLRLAMRKAAENLEFEEAARLRDEVKRLQA 680


>gi|330993416|ref|ZP_08317351.1| UvrABC system protein B [Gluconacetobacter sp. SXCC-1]
 gi|329759446|gb|EGG75955.1| UvrABC system protein B [Gluconacetobacter sp. SXCC-1]
          Length = 747

 Score =  895 bits (2314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/655 (63%), Positives = 520/655 (79%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIA+L+ G+   E+ Q+LLGVTGSGKTFTMAK+IEA Q+P +V+A
Sbjct: 38  FRVHSPYEPAGDQPTAIAELVSGVEGGERDQVLLGVTGSGKTFTMAKIIEATQKPTLVLA 97

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK+S INEQIDRMRH
Sbjct: 98  PNKTLAAQLYAEMKQFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKDSQINEQIDRMRH 157

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++LLERND I+V+SVSCIYGIGSVE+YS+M+V+L++G  +++ +L+  LV+ QY+R 
Sbjct: 158 AATQALLERNDVIIVASVSCIYGIGSVETYSRMVVKLEVGGEIDRDKLIRGLVELQYRRN 217

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G++I++FP   ED AWR+S+FG++I+EISEF PLTG+K  ++E+I IY
Sbjct: 218 DAAFQRGTFRVRGETIDVFPVQNEDRAWRISLFGDEIDEISEFDPLTGEKTGDLESISIY 277

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTPRPTL  AM  IK+EL+  L    +EG+LLEA+RL+QR T+DLEM+ETTG C+
Sbjct: 278 ANSHYVTPRPTLTQAMTGIKQELRETLARFNEEGKLLEAERLQQRTTFDLEMIETTGVCK 337

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLFEY+PED+LL VDESHVT+PQI GM RGD  RK+ LAE+
Sbjct: 338 GIENYSRYLSGRAPGEPPPTLFEYLPEDALLIVDESHVTVPQIGGMERGDHARKSVLAEF 397

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPL F EW+  RP T+ VSATPG WE+ + +G+  EQ+IRPTGL+DP   
Sbjct: 398 GFRLPSCLDNRPLTFAEWDSYRPQTVFVSATPGPWEMRRTEGVFAEQVIRPTGLIDPVTI 457

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  E       G R+L+T LTKRMAEDLTEY+ E  IRVRY+HS+V TLE
Sbjct: 458 VRPVEHQVDDLLAECRQTIADGGRVLVTTLTKRMAEDLTEYMNEAGIRVRYLHSDVDTLE 517

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 518 RIEIIRDLRLGAFDVLIGINLLREGLDIPECSLVAILDADKEGFLRSRTSLIQTIGRAAR 577

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V+LYAD +T S+  AI+ET RRREKQ   N++H I PQSV++ I E I  +  +D
Sbjct: 578 NVDGRVLLYADRMTDSLAYAIEETARRREKQNLWNEEHGITPQSVRKHIGEAISSVFEQD 637

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T + + D     +  K  KA +  L K+M  A+  L FE AA +RDEI+RL++
Sbjct: 638 YVTVSPTADGSVQEMVGKDYKAAIAELEKKMRAASAELEFETAAHLRDEIRRLEA 692


>gi|296115082|ref|ZP_06833724.1| excinuclease ABC subunit B [Gluconacetobacter hansenii ATCC 23769]
 gi|295978419|gb|EFG85155.1| excinuclease ABC subunit B [Gluconacetobacter hansenii ATCC 23769]
          Length = 763

 Score =  895 bits (2313), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/656 (63%), Positives = 527/656 (80%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ + Y P+GDQP AI++L+ GI   E+ Q+LLGVTGSGKTFTMAKVIEA Q+P +V+
Sbjct: 51  LFKINSPYEPAGDQPTAISELVAGIEGGERDQVLLGVTGSGKTFTMAKVIEATQKPTLVL 110

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK+S INEQIDRMR
Sbjct: 111 APNKTLAAQLYAEMKEFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKDSQINEQIDRMR 170

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT++LLERND I+V+SVSCIYGIGSVE+YS+M+V+L+ G S+++ +L+ +LV+ QY+R
Sbjct: 171 HAATQALLERNDVIIVASVSCIYGIGSVETYSRMVVRLESGGSIDRDQLVKALVELQYRR 230

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D G  RGTFRV G+S++IFP   ED AWRV++FG++I+EI EF PLTG K  +++ I I
Sbjct: 231 NDAGFQRGTFRVRGESVDIFPVQNEDRAWRVTLFGDEIDEIIEFDPLTGDKTADLQEISI 290

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YANSHYVTPRPTLN A+  IK EL+ +L  L KEG+LLEA+RL+QR T+DLEM+ETTG C
Sbjct: 291 YANSHYVTPRPTLNQAVTGIKAELRTQLEHLTKEGKLLEAERLQQRTTFDLEMIETTGVC 350

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           + IENYSRYL+GR PGEPPPTLFEY+PED+LL VDESHVT+PQI GM RGD+ RK+ LAE
Sbjct: 351 KGIENYSRYLSGRKPGEPPPTLFEYLPEDALLIVDESHVTVPQIGGMERGDYARKSVLAE 410

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPSC+DNRPL+F EW+  RP +I VSATPG WE+++  G+  EQ+IRPTGL+DP  
Sbjct: 411 FGFRLPSCLDNRPLKFGEWDAFRPQSIFVSATPGPWEMQRTGGVFAEQVIRPTGLIDPVT 470

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R    QV+D+  E   A  +G R+L+T LTKRMAEDLTEY+ E  I+VRY+HS+V TL
Sbjct: 471 DMRPVTHQVDDLLAECRKAIGEGGRVLVTTLTKRMAEDLTEYMNEAGIKVRYLHSDVDTL 530

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAA
Sbjct: 531 ERIEIIRDLRLGAFDVLIGINLLREGLDIPECSLVAILDADKEGFLRSRTSLIQTIGRAA 590

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+ +V+LYAD +T S+  AI+ET RRREKQ   N++  I P+SV++ I EV+  +  +
Sbjct: 591 RNVDGRVLLYADKMTDSLAYAIEETARRREKQSLWNEERGITPRSVRKHIGEVLSSVFEQ 650

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           D  T + + +     +  K  K  +  L K+M  A+ +L FE AAR+RDEI+RL++
Sbjct: 651 DYVTVSPTPEGDIKDMVGKDLKGAIADLEKRMRTASADLEFETAARLRDEIRRLEA 706


>gi|144899714|emb|CAM76578.1| Helicase subunit of the DNA excision repair complex
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 703

 Score =  895 bits (2312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/658 (63%), Positives = 530/658 (80%), Gaps = 7/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP+AIA L+ G+ +RE+ Q+LLGVTGSGKTFTMA VI   +RPA+V+A
Sbjct: 23  FKLVSDYQPAGDQPSAIATLVAGLEARERDQVLLGVTGSGKTFTMAHVIATTKRPALVLA 82

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E K+FFP NAVEYFVSYYDYYQPEAY+PRTDTYIEK+S INEQIDRMRH
Sbjct: 83  HNKTLAAQLYAEMKSFFPDNAVEYFVSYYDYYQPEAYIPRTDTYIEKDSQINEQIDRMRH 142

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATR+LLER D I+V+SVSCIYGIGSVESY++M ++L +G+S+++ ELL  LV+ QY R 
Sbjct: 143 AATRALLERRDVIIVASVSCIYGIGSVESYARMTLKLVVGESIDRTELLKRLVELQYTRN 202

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GDS+EIFP H ED AW+VS++G++IE I+EF PLTG+K   +  + +Y
Sbjct: 203 DAAFERGTFRVRGDSVEIFPVHYEDRAWQVSLWGDEIEGIAEFDPLTGEKTVRLSEVVVY 262

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPRPT+  A+  IK ELK  +   E EG+LLEAQR+ +R T+D+EMLETTG C+
Sbjct: 263 PSSHYVTPRPTITAALAGIKAELKATVAHFEAEGKLLEAQRIRERTTFDIEMLETTGHCK 322

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
           SIENYSRYLTGR PGEPPPTLFEY+P D+LL VDESHVT+PQI GMYRGD+ RK+TL+E+
Sbjct: 323 SIENYSRYLTGRKPGEPPPTLFEYLPPDALLIVDESHVTVPQIGGMYRGDYARKSTLSEF 382

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPL+FEEW+ +RP+++ VSATPG WE+++  G+  EQ+IRPTGL+DP   
Sbjct: 383 GFRLPSCIDNRPLKFEEWDIMRPSSLFVSATPGPWEMDRTGGVFAEQVIRPTGLIDPICI 442

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E+   A QG R L+TVLTKRMAEDLTEYL++  IRVRY+HS++ TLE
Sbjct: 443 IRPVEHQVDDLLAEVRQMAAQGHRTLVTVLTKRMAEDLTEYLHDHGIRVRYLHSDIDTLE 502

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRSKTSLIQTIGRAAR
Sbjct: 503 RIEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSKTSLIQTIGRAAR 562

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ +VILYAD +T S++ AIDET RRREKQ  +N  H I P+ +K+ + +V++ +  +D
Sbjct: 563 NIDGRVILYADKMTDSLKYAIDETNRRREKQQAYNVAHGITPEGIKKAVGDVLESVYEKD 622

Query: 741 AATTNISIDAQQLSLSKKKGK--AHLKS-LRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                +++D     L+   G   A +K+ + K+M  AA +L FEEAAR+RDE++RL++
Sbjct: 623 ----YLTVDTGDSGLAHGVGHNLAAVKADIEKRMKAAAADLEFEEAARLRDELRRLEA 676


>gi|83312902|ref|YP_423166.1| excinuclease ABC subunit B [Magnetospirillum magneticum AMB-1]
 gi|82947743|dbj|BAE52607.1| Helicase subunit of the DNA excision repair complex
           [Magnetospirillum magneticum AMB-1]
          Length = 683

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/656 (63%), Positives = 522/656 (79%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AIA+L  G+ + E+ Q+LLGVTGSGKTFTMA VI   +RPA+V+A
Sbjct: 3   FKIVSDYQPAGDQPQAIAELSAGVDADERDQVLLGVTGSGKTFTMAHVIARTRRPALVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAY+PRTDTYIEK+S++NEQIDRMRH
Sbjct: 63  PNKTLAAQLYAEMKGFFPDNAVEYFVSYYDYYQPEAYIPRTDTYIEKDSAVNEQIDRMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATR+LLER D I+V+SVSCIYGIGSVESY++M V LK+G+S+++ +LL  LV+ QY R 
Sbjct: 123 AATRALLERRDVILVASVSCIYGIGSVESYARMTVALKVGESIDRSDLLKRLVELQYTRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD++EIFP H ED AWR+S+FG++IE I+EF PLTG+K  ++  + +Y
Sbjct: 183 DAAFERGTFRVRGDAVEIFPVHYEDRAWRLSLFGDEIEAINEFDPLTGEKTCSLSEVTVY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPRPT+  A+K IK ELK  L     EG+LLEAQRLEQR  +DLEMLETTG C+
Sbjct: 243 PSSHYVTPRPTITQAIKGIKAELKETLERFHAEGKLLEAQRLEQRTNFDLEMLETTGHCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
           SIENYSRYLTGR PG+PPPTLFEY+PED+LL VDESHVT+PQI GMYRGDF+RK+ LAE+
Sbjct: 303 SIENYSRYLTGRRPGDPPPTLFEYLPEDALLIVDESHVTVPQIGGMYRGDFNRKSVLAEF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPL+FEEW  +RP T+ VSATPG WE+E+  G+  EQ+IRPTGL+DP   
Sbjct: 363 GFRLPSCIDNRPLKFEEWELMRPQTVYVSATPGPWEMERTGGVFTEQVIRPTGLIDPVCI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  E+   A+ G R L+T LTKRMAEDLTEY+++  +RVRY+HS++ TLE
Sbjct: 423 VRPVEHQVDDLLGEVRQMARLGNRTLVTTLTKRMAEDLTEYMHDNGVRVRYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRSKTSLIQTIGRAAR
Sbjct: 483 RIEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSKTSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ +VILYAD +T S+  A+ ET RRREKQ  +N  H I P+ +++ + +V+D +   D
Sbjct: 543 NIDGRVILYADKMTASLDYALAETNRRREKQQAYNALHGITPEGIRKAVSDVMDSVYEAD 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS-LRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T  +      L+       A +K+ + K+M  AA +L FEEAAR+RDE++RL++
Sbjct: 603 YVT--VGTGDSGLAHGVGHNLASVKADIEKRMKAAAADLEFEEAARLRDELRRLEA 656


>gi|71082789|ref|YP_265508.1| excinuclease ABC subunit B [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71061902|gb|AAZ20905.1| excinuclease ABC chain B [Candidatus Pelagibacter ubique HTCC1062]
          Length = 723

 Score =  891 bits (2303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/658 (64%), Positives = 525/658 (79%), Gaps = 10/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ TD+ P+GDQP AI QL+KG +  E  Q+LLGVTGSGKTFTMA+VIE   RPA+++A
Sbjct: 29  FKLVTDFKPAGDQPEAIKQLVKGANKDELSQVLLGVTGSGKTFTMAQVIERTNRPALILA 88

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP NAVEYFVSYYDYY PEAYVPR+DTYIEKE+SINEQIDRMRH
Sbjct: 89  PNKTLAAQLYGEMKSFFPENAVEYFVSYYDYYTPEAYVPRSDTYIEKEASINEQIDRMRH 148

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER+D I+VSSVSCIYG+GSVE+YS+M + LK      +++L+ +LV  QYKR 
Sbjct: 149 SATRSLLERDDVIIVSSVSCIYGLGSVEAYSKMTLSLKKDYDYNREQLIKTLVHLQYKRN 208

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFR  G+ IEIFPSHLED AWR+S+FG+ +E+I EF PLTG  +++++ IK+Y
Sbjct: 209 DQSFYRGTFRARGEYIEIFPSHLEDRAWRLSLFGDKLEKIEEFDPLTGDLLKDLDVIKVY 268

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHY+TP+PT+  A+  IK EL++ L + +++ +LLEAQRLE+R  +DLEM+E TGSC 
Sbjct: 269 ANSHYITPKPTIEQAVIKIKRELEVTLKKFKEQNKLLEAQRLEERTKFDLEMIEATGSCA 328

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLFEY P+++L+FVDE HVT+PQ++GMY+GD  RK+ LAEY
Sbjct: 329 GIENYSRFLSGRKPGEPPPTLFEYFPDNTLIFVDECHVTVPQLNGMYKGDRSRKSNLAEY 388

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +R  T+ VSATPG WELEQ +G  VEQIIRPTGL+DPPVE
Sbjct: 389 GFRLPSCMDNRPLKFEEWDAMRTQTVFVSATPGPWELEQTKGKFVEQIIRPTGLIDPPVE 448

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+ A+ QV+DV  E      +  R+L+T LTK+MAEDLTEY +E  IRVRY+HS++ TLE
Sbjct: 449 IKPAKNQVDDVMHECKKTIDKNFRVLITTLTKKMAEDLTEYFHENGIRVRYLHSDIDTLE 508

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVLVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 509 RIEIMRDLRLGVFDVLVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAAR 568

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ +VILYAD  TKSI+ AI ET RRR  Q+ +NKKHNI+  S+K++I +V++ +  +D
Sbjct: 569 NLDGRVILYADKETKSIKKAIQETDRRRTIQVAYNKKHNIDATSIKKEISDVLESVYEKD 628

Query: 741 --AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                T  +I            K HLK L K+M  AA NL FEEAA+IRDEI+ L++S
Sbjct: 629 YLKVGTGDNIGGNL--------KKHLKQLNKRMKDAATNLEFEEAAKIRDEIRNLEAS 678


>gi|114328889|ref|YP_746046.1| excinuclease ABC subunit B [Granulibacter bethesdensis CGDNIH1]
 gi|114317063|gb|ABI63123.1| excinuclease ABC subunit B [Granulibacter bethesdensis CGDNIH1]
          Length = 746

 Score =  891 bits (2303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/655 (62%), Positives = 525/655 (80%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ +DY P GDQP+AI +L+ G+   E+ Q+LLGVTGSGKTFTMAKVIE MQRPA+++A
Sbjct: 38  LEVVSDYKPDGDQPSAIRELVSGLRQGERNQVLLGVTGSGKTFTMAKVIEEMQRPALILA 97

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVPRTDTYIEK++ INEQIDRMRH
Sbjct: 98  PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPRTDTYIEKDAQINEQIDRMRH 157

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++LLERND I+V+SVSCIYGIGSVE+Y++M+V+L++G  +++  L  +LV  QY+R 
Sbjct: 158 AATQALLERNDVIIVASVSCIYGIGSVETYAKMVVRLQVGGQIDRDALARALVDLQYRRN 217

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFR+ G++++IFP+  ED AWR+S+FG++I+ ISEF PLTG     +E   +Y
Sbjct: 218 DAAFQRGTFRMRGETVDIFPASHEDRAWRISLFGDEIDAISEFDPLTGNVTAKLEEAVVY 277

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTPRPTL+ A+K IK+EL+ RL E + EG++LEA+RL QR+T+D+EM+ETTGSC+
Sbjct: 278 ANSHYVTPRPTLSQAIKEIKQELQQRLAEFDAEGKVLEAERLRQRVTFDIEMMETTGSCK 337

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PG+PPPTLFEY+P++++L VDESHVT+PQI GM RGD  RK+ L+E+
Sbjct: 338 GIENYSRYLSGRAPGDPPPTLFEYLPDNAILIVDESHVTVPQIGGMERGDHARKSILSEF 397

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPL+F+EW   RP T+ VSATPG WE+EQ  G+  EQ+IRPTGL+DP  E
Sbjct: 398 GFRLPSCIDNRPLKFDEWERFRPETVFVSATPGPWEMEQTGGVFAEQVIRPTGLIDPITE 457

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  EI L   +G R+L+T LTKRMAEDLTEYL E  ++VRY+HS+V TLE
Sbjct: 458 IRPVEHQVDDLLAEIRLVTAKGNRVLVTTLTKRMAEDLTEYLTEHGVKVRYLHSDVDTLE 517

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 518 RIEIIRDLRVGVFDVLIGINLLREGLDIPECSLVAILDADKEGFLRSQTSLIQTIGRAAR 577

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +VILYADT+T+S+  A++ET RRRE+Q   N+ H I P +V+++I ++++ +  +D
Sbjct: 578 NVEGRVILYADTMTRSLTFAVEETARRRERQKAWNEAHGITPTTVRKQIGKMLESVFEQD 637

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T   +          K  +A +  L ++M  AA +L FEEA R+RDEI+RL++
Sbjct: 638 YVTVAPTSATSAAEFVGKDLRASITELERRMRAAAADLEFEEAGRLRDEIRRLEA 692


>gi|262276857|ref|ZP_06054650.1| excinuclease ABC subunit B [alpha proteobacterium HIMB114]
 gi|262223960|gb|EEY74419.1| excinuclease ABC subunit B [alpha proteobacterium HIMB114]
          Length = 715

 Score =  890 bits (2301), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/656 (63%), Positives = 525/656 (80%), Gaps = 6/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ PSGDQP AI +L  G++ ++K Q+LLGVTGSGKTFTMAK+IE + RPAI++A
Sbjct: 29  FKITSNFKPSGDQPMAIKELCSGLNDQQKNQVLLGVTGSGKTFTMAKIIETLNRPAIILA 88

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FF +N+VEYFVSYYDYY PEAYVPR+DTYIEKESSINEQIDRMRH
Sbjct: 89  PNKTLAAQLYGEMKSFFANNSVEYFVSYYDYYTPEAYVPRSDTYIEKESSINEQIDRMRH 148

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLE++D I+VSSVSCIYG+GS ESYS+M       ++ E++ ++  L++ QYKR 
Sbjct: 149 SATRSLLEKDDVIIVSSVSCIYGLGSAESYSKMTFTFIKNENYERENIIKGLIELQYKRN 208

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G++IEIFPSHLED AW++S+    +  I EF PLTG K  N+  IK+Y
Sbjct: 209 DQNFQRGTFRVRGENIEIFPSHLEDRAWKLSLDEGKLVSIKEFDPLTGDKTENLNIIKVY 268

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHY+TPRPT+N A+K I+EEL++ + +   E +LLEAQR+E+R  +DLEM+E TGSC 
Sbjct: 269 ANSHYITPRPTVNQAIKQIREELRLTIDKFRGENKLLEAQRIEERTRFDLEMIEATGSCS 328

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GRN GEPPPTLFEY+P+++L+FVDESHVT+PQ++GMY+GD+ RK TL++Y
Sbjct: 329 GIENYSRFLSGRNKGEPPPTLFEYLPDNALVFVDESHVTVPQLNGMYKGDYTRKKTLSDY 388

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +RP T+ VSATPG WE+EQ +G+  EQIIRPTGL DP VE
Sbjct: 389 GFRLPSCMDNRPLKFEEWDLMRPQTVFVSATPGHWEMEQTKGVFAEQIIRPTGLTDPEVE 448

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A+ QV+D+ +E     ++  R+L+T LTK+MAEDLTEY  E  I+VRYMHS++ TLE
Sbjct: 449 IRPAKNQVDDLLNECQGIIKKEQRVLVTTLTKKMAEDLTEYFDENGIKVRYMHSDIDTLE 508

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG FDVLVGINLLREGLDIPEC LVAILDADKEGFLRS+TSL+QTIGRAAR
Sbjct: 509 RIEIIRDLRLGHFDVLVGINLLREGLDIPECSLVAILDADKEGFLRSETSLVQTIGRAAR 568

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  KVILYAD  TKSI  AI+ET RRR KQ E+NKK+NI   S+K++I ++++ +  +D
Sbjct: 569 NVEGKVILYADKKTKSITKAIEETDRRRTKQQEYNKKNNICASSIKKEIGDILESVYEKD 628

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T+      + +      K H+K+L+K M  AADNL FE+AA IRDEI++L+ S
Sbjct: 629 YLNTD------KFTKPGHNLKKHMKALKKDMQGAADNLEFEKAAEIRDEIRKLEQS 678


>gi|254456166|ref|ZP_05069595.1| excinuclease ABC, B subunit [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083168|gb|EDZ60594.1| excinuclease ABC, B subunit [Candidatus Pelagibacter sp. HTCC7211]
          Length = 723

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/656 (64%), Positives = 524/656 (79%), Gaps = 6/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQM+TD+ P+GDQP AI QL+ G +  +  Q+LLGVTGSGKTFTMAKVIE   RPA+++A
Sbjct: 29  FQMKTDFKPAGDQPEAIKQLVNGANKDQLSQVLLGVTGSGKTFTMAKVIEKTNRPALILA 88

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP NAVEYFVSYYDYY PEAYVPR+DTYIEKE+SINEQIDRMRH
Sbjct: 89  PNKTLAAQLYGEMKSFFPDNAVEYFVSYYDYYTPEAYVPRSDTYIEKEASINEQIDRMRH 148

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER+D I+VSSVSCIYG+GSVE+YS+M + LK      ++EL+ SLV  QYKR 
Sbjct: 149 SATRSLLERDDVIIVSSVSCIYGLGSVEAYSKMTLSLKTNYDYNREELIKSLVALQYKRN 208

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFR  G+ +EIFPSHLED AWR+S+FG+ +E+I EF PLTG  +  ++ IK+Y
Sbjct: 209 DQNFYRGTFRARGEYLEIFPSHLEDRAWRLSLFGDKLEKIEEFDPLTGDLVNELDVIKVY 268

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHY+TP+PT+  A+  IK EL++ L + +++ +LLEAQRLE+R  +DLEM+E TGSC 
Sbjct: 269 ANSHYITPKPTIEQAIIKIKRELEITLKKFKEQNKLLEAQRLEERTKFDLEMIEATGSCA 328

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLFEY P+++L+FVDE HVT+PQ++GMY+GD  RK+ LAEY
Sbjct: 329 GIENYSRFLSGRKPGEPPPTLFEYFPDNTLIFVDECHVTVPQLNGMYKGDRSRKSNLAEY 388

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +R  T+ VSATPG WEL+Q +   VEQ+IRPTGL+DPPVE
Sbjct: 389 GFRLPSCMDNRPLKFEEWDAMRTQTVFVSATPGPWELKQTKNKFVEQVIRPTGLIDPPVE 448

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A+ QV+D+  E         R+L+T LTK+MAEDLTEYL+E  I+VRYMHS++ TLE
Sbjct: 449 IRPAKNQVDDLMHECLKVIDNNYRVLVTTLTKKMAEDLTEYLHENGIKVRYMHSDIDTLE 508

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVLVGINLLREGLDIPEC LV ILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 509 RIEIMRDLRLGVFDVLVGINLLREGLDIPECALVGILDADKEGFLRSETSLIQTIGRAAR 568

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ KVILYAD  TKSI+ AI ET RRR  Q+ +NKKH I+ +++K++I +V++ +  +D
Sbjct: 569 NLDGKVILYADKETKSIKNAIKETDRRRTIQVAYNKKHKIDAKTIKKEIGDVLESVYEKD 628

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                     + +  + KK   HLKSL K+M  AA NL FEEAA+IRDEI++L++S
Sbjct: 629 YVKVGTD---ENIGGNLKK---HLKSLNKRMKEAATNLEFEEAAKIRDEIRKLEAS 678


>gi|91762788|ref|ZP_01264753.1| excinuclease ABC subunit B [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718590|gb|EAS85240.1| excinuclease ABC subunit B [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 723

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/658 (64%), Positives = 525/658 (79%), Gaps = 10/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ TD+ P+GDQP AI +L+KG +  E  Q+LLGVTGSGKTFTMA+VIE   RPA+++A
Sbjct: 29  FKLVTDFKPAGDQPEAIKKLVKGANKEELSQVLLGVTGSGKTFTMAQVIERTNRPALILA 88

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP NAVEYFVSYYDYY PEAYVPR+DTYIEKE+SINEQIDRMRH
Sbjct: 89  PNKTLAAQLYGEMKSFFPENAVEYFVSYYDYYTPEAYVPRSDTYIEKEASINEQIDRMRH 148

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER+D I+VSSVSCIYG+GSVE+YS+M + LK      +++L+ +LV  QYKR 
Sbjct: 149 SATRSLLERDDVIIVSSVSCIYGLGSVEAYSKMTLSLKKDYDYNREQLIKTLVHLQYKRN 208

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFR  G+ IEIFPSHLED AWR+S+FG+ +E+I EF PLTG  +++++ IK+Y
Sbjct: 209 DQSFYRGTFRARGEYIEIFPSHLEDRAWRLSLFGDKLEKIEEFDPLTGDLLKDLDVIKVY 268

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHY+TP+PT+  A+  IK EL++ L + +++ +LLEAQRLE+R  +DLEM+E TGSC 
Sbjct: 269 ANSHYITPKPTIEQAVIKIKRELEVTLKKFKEQNKLLEAQRLEERTKFDLEMIEATGSCA 328

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLFEY P+++L+FVDE HVT+PQ++GMY+GD  RK+ LAEY
Sbjct: 329 GIENYSRFLSGRKPGEPPPTLFEYFPDNTLIFVDECHVTVPQLNGMYKGDRSRKSNLAEY 388

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +R  T+ VSATPG WELEQ +G  VEQIIRPTGL+DPPVE
Sbjct: 389 GFRLPSCMDNRPLKFEEWDAMRTQTVFVSATPGPWELEQTKGKFVEQIIRPTGLIDPPVE 448

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+ A+ QV+DV  E      +  R+L+T LTK+MAEDLTEY +E  IRVRY+HS++ TLE
Sbjct: 449 IKPAKNQVDDVMHECKKTIDKNFRVLITTLTKKMAEDLTEYFHENGIRVRYLHSDIDTLE 508

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVLVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 509 RIEIMRDLRLGVFDVLVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAAR 568

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ +VILYAD  TKSI+ AI ET RRR  Q+ +NKKHNI+  S+K++I +V++ +  +D
Sbjct: 569 NLDGRVILYADKETKSIKKAIQETDRRRTIQVAYNKKHNIDATSIKKEISDVLESVYEKD 628

Query: 741 --AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                T  +I            K HLK L K+M  AA NL FEEAA+IRDEI+ L++S
Sbjct: 629 YLKVGTGDNIGGNL--------KKHLKQLNKRMKDAATNLEFEEAAKIRDEIRNLEAS 678


>gi|241760917|ref|ZP_04759006.1| excinuclease ABC, B subunit [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374536|gb|EER63997.1| excinuclease ABC, B subunit [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 725

 Score =  888 bits (2294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/672 (62%), Positives = 523/672 (77%), Gaps = 5/672 (0%)

Query: 123 WTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182
           + PHR  S    ++    F++ +DY P+GDQP AI+ L K I   E+ Q+LLGVTGSGKT
Sbjct: 18  FVPHRP-SRPEKTEPSKPFRLVSDYEPAGDQPQAISALCKDIQKGERDQVLLGVTGSGKT 76

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242
           FTMAKVIE +QRP++++APNKILAAQLY EFK FFP NAVE+FVSYYDYYQPEAYVPRTD
Sbjct: 77  FTMAKVIEKLQRPSLILAPNKILAAQLYGEFKRFFPENAVEFFVSYYDYYQPEAYVPRTD 136

Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302
           TYIEK+S+INE IDRMRH+ATRSLLER D I+V+SVSC+YGIGSV++YS M  +L  G  
Sbjct: 137 TYIEKDSAINEAIDRMRHAATRSLLEREDVIIVASVSCLYGIGSVDTYSSMTFRLLKGQL 196

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
           V+Q+E++  LV  QYKR ++   RG+FRV GD++EIFPSH ED+AWR+S FG++IEEISE
Sbjct: 197 VDQREIIRRLVALQYKRNEVAFGRGSFRVKGDTLEIFPSHYEDMAWRISFFGDEIEEISE 256

Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
           F PLTG KI  ++ IKIYANSHYVTP PTL  A   I+ EL  RL E + EG+LLEAQRL
Sbjct: 257 FDPLTGVKIAKLDQIKIYANSHYVTPEPTLKAANNAIRRELDNRLREFKAEGKLLEAQRL 316

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482
           E+R  +DLEM+  TG+C  IENYSR+LTGR PGEPPPTLFEY+P+++LLFVDESH TIPQ
Sbjct: 317 EERTEFDLEMMAATGACSGIENYSRFLTGRAPGEPPPTLFEYLPDNALLFVDESHQTIPQ 376

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542
           I+GM RGD+ RK TLA+YGFRLPSC+DNRPLRFEEWN +RP T+ VSATPG WELEQ  G
Sbjct: 377 INGMSRGDYRRKTTLADYGFRLPSCIDNRPLRFEEWNAMRPQTVYVSATPGPWELEQTGG 436

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           + VEQIIRPTGLVDP +E+R    QV+++  E    A  G R L+T LTKRMAEDLTEY+
Sbjct: 437 VFVEQIIRPTGLVDPAIEVRPIEEQVDNLIFEAKKTAAAGWRSLVTTLTKRMAEDLTEYM 496

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           YE  ++VRYMHS+V+T+ERIE+IRDLRLG +DVL+GINLLREGLDIPECGLVA+LDADKE
Sbjct: 497 YEAGLKVRYMHSDVETIERIELIRDLRLGVYDVLIGINLLREGLDIPECGLVAVLDADKE 556

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
           GFLRS+TSLIQTIGRAARN   +VILY D IT S+  A+ ET RRR KQ+  NK HNI P
Sbjct: 557 GFLRSETSLIQTIGRAARNAEGRVILYGDKITGSMARAMAETERRRIKQIAWNKAHNITP 616

Query: 723 QSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
            +VK ++ +++    + D++    +I+     +  +     +    K+M  AA NL FE+
Sbjct: 617 ATVKRQVDDIVGHFGVIDSSEAAATIENHDPKVLARS----ISETEKEMLEAAANLEFEK 672

Query: 783 AARIRDEIKRLK 794
           AA++RD + +LK
Sbjct: 673 AAQLRDVLHQLK 684


>gi|56551258|ref|YP_162097.1| excinuclease ABC subunit B [Zymomonas mobilis subsp. mobilis ZM4]
 gi|60415994|sp|Q56998|UVRB_ZYMMO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56542832|gb|AAV88986.1| excinuclease ABC, B subunit [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 740

 Score =  887 bits (2293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/685 (62%), Positives = 529/685 (77%), Gaps = 13/685 (1%)

Query: 113 DNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQL 172
           D P  +N   + PHR  S    ++    F++ +DY P+GDQP AI+ L K I   E+ Q+
Sbjct: 10  DEP--ENHSDFVPHRP-SRPEKTEPSKPFRLVSDYEPAGDQPQAISALCKDIQKGERDQV 66

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           LLGVTGSGKTFTMAKVIE +QRP++++APNKILAAQLY EFK FFP NAVE+FVSYYDYY
Sbjct: 67  LLGVTGSGKTFTMAKVIEKLQRPSLILAPNKILAAQLYGEFKRFFPENAVEFFVSYYDYY 126

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           QPEAYVPRTDTYIEK+S+INE IDRMRH+ATRSLLER D I+V+SVSC+YGIGSV++YS 
Sbjct: 127 QPEAYVPRTDTYIEKDSAINEAIDRMRHAATRSLLEREDVIIVASVSCLYGIGSVDTYSS 186

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
           M  +L  G  V+Q+E++  LV  QYKR ++   RG+FRV GD++EIFPSH ED+AWR+S 
Sbjct: 187 MTFRLLKGQLVDQREIIRRLVALQYKRNEVAFGRGSFRVKGDTLEIFPSHYEDMAWRISF 246

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG++IEEISEF PLTG KI  ++ IKIYANSHYVTP PTL  A   I+ EL  RL E + 
Sbjct: 247 FGDEIEEISEFDPLTGVKIAKLDQIKIYANSHYVTPEPTLKAANNAIRRELDNRLREFKA 306

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           EG+LLEAQRLE+R  +DLEM+  TG+C  IENYSR+LTGR PGEPPPTLFEY+P+++LLF
Sbjct: 307 EGKLLEAQRLEERTEFDLEMMAATGACSGIENYSRFLTGRAPGEPPPTLFEYLPDNALLF 366

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           VDESH TIPQI+GM RGD+ RK TLA+YGFRLPSC+DNRPLRFEEWN +RP T+ VSATP
Sbjct: 367 VDESHQTIPQINGMSRGDYRRKTTLADYGFRLPSCIDNRPLRFEEWNAMRPQTVYVSATP 426

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
           G WELEQ  G+ VEQIIRPTGLVDP +E+R    QV+++  E    A  G R L+T LTK
Sbjct: 427 GPWELEQTGGVFVEQIIRPTGLVDPAIEVRPIEEQVDNLIFEAKKTAAAGWRSLVTTLTK 486

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RMAEDLTEY+YE  ++VRYMHS+V+T+ERIE+IRDLRLG +DVL+GINLLREGLDIPECG
Sbjct: 487 RMAEDLTEYMYEAGLKVRYMHSDVETIERIELIRDLRLGVYDVLIGINLLREGLDIPECG 546

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           LVA+LDADKEGFLRS+TSLIQTIGRAARN   +VILY D IT S+  A+ ET RRR KQ+
Sbjct: 547 LVAVLDADKEGFLRSETSLIQTIGRAARNAEGRVILYGDKITGSMARAMAETERRRIKQI 606

Query: 713 EHNKKHNINPQSVKEKIMEVIDPILL---EDAATTNISIDAQQLSLSKKKGKAHLKSLRK 769
             NK HNI P +VK ++ +++    +    +AA T  + D + L+ S       +    K
Sbjct: 607 AWNKAHNITPATVKRQVDDIVGHFGVVNSSEAAATIENHDPKVLARS-------ISETEK 659

Query: 770 QMHLAADNLNFEEAARIRDEIKRLK 794
           +M  AA NL FE+AA++RD + +LK
Sbjct: 660 EMLEAAANLEFEKAAQLRDVLHQLK 684


>gi|260753114|ref|YP_003226007.1| excinuclease ABC subunit B [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552477|gb|ACV75423.1| excinuclease ABC, B subunit [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 740

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/685 (62%), Positives = 529/685 (77%), Gaps = 13/685 (1%)

Query: 113 DNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQL 172
           D P  +N   + PHR  S    ++    F++ +DY P+GDQP AI+ L K I   E+ Q+
Sbjct: 10  DEP--ENHSDFVPHRP-SRPEKTEPSKPFRLVSDYEPAGDQPQAISALCKDIQKGERDQV 66

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           LLGVTGSGKTFTMAKVIE +QRP++++APNKILAAQLY EFK FFP NAVE+FVSYYDYY
Sbjct: 67  LLGVTGSGKTFTMAKVIEKLQRPSLILAPNKILAAQLYGEFKRFFPENAVEFFVSYYDYY 126

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           QPEAYVPRTDTYIEK+S+INE IDRMRH+ATRSLLER D I+V+SVSC+YGIGSV++YS 
Sbjct: 127 QPEAYVPRTDTYIEKDSAINEAIDRMRHAATRSLLEREDVIIVASVSCLYGIGSVDTYSS 186

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
           M  +L  G  V+Q+E++  LV  QYKR ++   RG+FRV GD++EIFPSH ED+AWR+S 
Sbjct: 187 MTFRLLKGQLVDQREIIRRLVALQYKRNEVAFGRGSFRVKGDTLEIFPSHYEDMAWRISF 246

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG++IEEISEF PLTG KI  ++ IKIYANSHYVTP PTL  A   I+ EL  RL E + 
Sbjct: 247 FGDEIEEISEFDPLTGVKIAKLDQIKIYANSHYVTPEPTLKAANNAIRRELDSRLREFKA 306

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           EG+LLEAQRLE+R  +DLEM+  TG+C  IENYSR+LTGR PGEPPPTLFEY+P+++LLF
Sbjct: 307 EGKLLEAQRLEERTEFDLEMMAATGACSGIENYSRFLTGRAPGEPPPTLFEYLPDNALLF 366

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           VDESH TIPQI+GM RGD+ RK TLA+YGFRLPSC+DNRPLRFEEWN +RP T+ VSATP
Sbjct: 367 VDESHQTIPQINGMSRGDYRRKTTLADYGFRLPSCIDNRPLRFEEWNAMRPQTVYVSATP 426

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
           G WELEQ  G+ VEQIIRPTGLVDP +E+R    QV+++  E    A  G R L+T LTK
Sbjct: 427 GPWELEQTGGVFVEQIIRPTGLVDPAIEVRPIEEQVDNLIFEAKKTAAAGWRSLVTTLTK 486

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RMAEDLTEY+YE  ++VRYMHS+V+T+ERIE+IRDLRLG +DVL+GINLLREGLDIPECG
Sbjct: 487 RMAEDLTEYMYEAGLKVRYMHSDVETIERIELIRDLRLGVYDVLIGINLLREGLDIPECG 546

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           LVA+LDADKEGFLRS+TSLIQTIGRAARN   +VILY D IT S+  A+ ET RRR KQ+
Sbjct: 547 LVAVLDADKEGFLRSETSLIQTIGRAARNAEGRVILYGDKITGSMARAMAETERRRIKQI 606

Query: 713 EHNKKHNINPQSVKEKIMEVIDPILL---EDAATTNISIDAQQLSLSKKKGKAHLKSLRK 769
             NK HNI P +VK ++ +++    +    +AA T  + D + L+ S       +    K
Sbjct: 607 AWNKAHNIIPATVKRQVDDIVGHFGVVNSSEAAATIENHDPKVLARS-------ISETEK 659

Query: 770 QMHLAADNLNFEEAARIRDEIKRLK 794
           +M  AA NL FE+AA++RD + +LK
Sbjct: 660 EMLEAAANLEFEKAAQLRDVLHQLK 684


>gi|23016719|ref|ZP_00056472.1| COG0556: Helicase subunit of the DNA excision repair complex
           [Magnetospirillum magnetotacticum MS-1]
          Length = 704

 Score =  886 bits (2289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/655 (62%), Positives = 516/655 (78%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI +L  G+ + E+ Q+LLGVTGSGKTFTMA VI   +RPA+V+A
Sbjct: 22  FKIVSDYQPAGDQPQAIDELSAGVVAEERDQVLLGVTGSGKTFTMAHVIARTKRPALVLA 81

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAY+PRTDTYIEK+S++NEQIDRMRH
Sbjct: 82  PNKTLAAQLYAEMKGFFPDNAVEYFVSYYDYYQPEAYIPRTDTYIEKDSAVNEQIDRMRH 141

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATR+LLER D I+V+SVSCIYGIGSVESY++M V LK+G+ +++ +LL  LV+ QY R 
Sbjct: 142 AATRALLERRDVILVASVSCIYGIGSVESYARMTVALKVGECIDRSDLLKRLVELQYTRN 201

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD++EIFP H ED AWR+S+FG++IE I+EF PLTG+K  ++  + +Y
Sbjct: 202 DAAFERGTFRVRGDAVEIFPVHYEDRAWRLSLFGDEIEAINEFDPLTGEKTCSLSEVTVY 261

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPRPT+  A+K IK ELK  L     EG+LLEAQRLEQR  +DLEMLETTG C+
Sbjct: 262 PSSHYVTPRPTITQAIKGIKAELKETLERFHAEGKLLEAQRLEQRTNFDLEMLETTGHCK 321

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
           SIENYSRYLTGR PG+PPPTLFEY+PED+LL VDESHVT+PQI GMYRGDF+RK+ LAE+
Sbjct: 322 SIENYSRYLTGRRPGDPPPTLFEYLPEDALLIVDESHVTVPQIGGMYRGDFNRKSVLAEF 381

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPL+FEEW  +RP T+ VSATPG WE+E+  G+  EQ+IRPTGL+DP   
Sbjct: 382 GFRLPSCIDNRPLKFEEWELMRPQTVYVSATPGPWEMERTGGVFTEQVIRPTGLIDPVCI 441

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  E+   A+ G R L+T LTKRMAEDLTEY+++  +RVRY+HS++ TLE
Sbjct: 442 VRPVEHQVDDLLGEVRQMARLGNRTLVTTLTKRMAEDLTEYMHDNGVRVRYLHSDIDTLE 501

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRSKTSLIQTIGRAAR
Sbjct: 502 RIEIIRDLRLGAFDVLIGINLLREGLDIPECSLVAILDADKEGFLRSKTSLIQTIGRAAR 561

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ +VILYAD +T S++ A+ ET RRR+KQ  +N  H I P+ +++ + +V+D +   D
Sbjct: 562 NIDGRVILYADKMTASLEYALAETNRRRDKQQAYNAAHGITPEGIRKAVSDVMDSVYEAD 621

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T        +  +           + K+M  AA +L FEEAAR+RDE++RL++
Sbjct: 622 YVTVGTGDSGIKHGVGHNLATVK-ADIEKRMKAAAADLEFEEAARLRDELRRLEA 675


>gi|85710443|ref|ZP_01041507.1| excinuclease ABC subunit B [Erythrobacter sp. NAP1]
 gi|85687621|gb|EAQ27626.1| excinuclease ABC subunit B [Erythrobacter sp. NAP1]
          Length = 731

 Score =  885 bits (2286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/680 (62%), Positives = 538/680 (79%), Gaps = 6/680 (0%)

Query: 118 KNGKIWTPHRSWSINNHSKDITF--FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
           + G+ +TPHR    N   K +    F++ +DY P+GDQP AI +L++G  + ++ Q LLG
Sbjct: 14  ETGEEFTPHRP---NRPEKSMPGKKFKLVSDYEPAGDQPTAIKELVEGALAGDQTQTLLG 70

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           VTGSGKTFTMAKVIE +QRPA+++APNKILAAQLY E K+FFP NAVEYFVSYYDYYQPE
Sbjct: 71  VTGSGKTFTMAKVIETLQRPALILAPNKILAAQLYGEMKSFFPENAVEYFVSYYDYYQPE 130

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AYVPR+DTYIEKESS+NE IDRMRHSATR+LLER+D I+V+SVSC+YGIGSVE+YS M+ 
Sbjct: 131 AYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVIIVASVSCLYGIGSVETYSAMVF 190

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K  ++V+Q+EL+  LV  QYKR D    RG FRV GD++E+FPSH ED+AWR+S FG+
Sbjct: 191 DIKKDETVDQRELIRKLVALQYKRNDAAFTRGCFRVRGDNLELFPSHYEDMAWRISFFGD 250

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +IEEI+EF PLTG+K  +++ +++YANSHYVTP PT+  A + IK EL+ RL ELE+EG+
Sbjct: 251 EIEEIAEFDPLTGKKGASLDKVRVYANSHYVTPGPTMKQATEAIKFELEHRLKELEEEGK 310

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLE QRLEQR  +DLEM+  TGSC  IENYSR+LTGR PGEPPPTLFEY+PE++LLFVDE
Sbjct: 311 LLEHQRLEQRTHFDLEMIAATGSCNGIENYSRFLTGRLPGEPPPTLFEYLPENALLFVDE 370

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SH T+PQI  M RGD  RK TLAEYGFRLPSC+DNRPLRF EW+ +RP T  VSATPG W
Sbjct: 371 SHQTVPQIGAMARGDHRRKLTLAEYGFRLPSCIDNRPLRFNEWDAMRPQTFAVSATPGPW 430

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           E+EQ  G+  EQ+IRPTGL+DPPVEIR    QV+D   E    A++G R L+T LTKRMA
Sbjct: 431 EMEQTGGVFAEQVIRPTGLIDPPVEIRPVEDQVQDCIQECLATAKKGYRTLVTTLTKRMA 490

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLTE+++E  ++VRYMHS+V+TLERIE+IRDLR+G +DVL+GINLLREGLDIPECGLV 
Sbjct: 491 EDLTEFMHEAGVKVRYMHSDVETLERIELIRDLRMGVYDVLIGINLLREGLDIPECGLVC 550

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS+TSL+QTIGRAARNV+ +VILYAD IT S++ A+ ET RRREKQ   N
Sbjct: 551 ILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADRITGSMERAMAETDRRREKQKAFN 610

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAA 775
           ++H I P+++K  I +++     +D  T +   D +  +L     +++++ L K+M  AA
Sbjct: 611 EEHGITPKTIKRDIADIVAHTASQDGVTVDTG-DDEVNNLVGHNLRSYIEDLEKRMRDAA 669

Query: 776 DNLNFEEAARIRDEIKRLKS 795
            NL FEEA R+RDEI+RL++
Sbjct: 670 ANLEFEEAGRLRDEIRRLEN 689


>gi|258541339|ref|YP_003186772.1| excinuclease ABC subunit B [Acetobacter pasteurianus IFO 3283-01]
 gi|256632417|dbj|BAH98392.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256635474|dbj|BAI01443.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256638529|dbj|BAI04491.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256641583|dbj|BAI07538.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256644638|dbj|BAI10586.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256647693|dbj|BAI13634.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256650746|dbj|BAI16680.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256653737|dbj|BAI19664.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 748

 Score =  883 bits (2282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/655 (62%), Positives = 519/655 (79%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ ++Y P+GDQP AI++L+ G+ + E+ Q+LLGVTGSGKTF+MAK+IEA Q+P +++A
Sbjct: 44  MEVVSEYEPAGDQPQAISELVAGVEAGERDQVLLGVTGSGKTFSMAKIIEATQKPTLILA 103

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEK+S INEQIDRMRH
Sbjct: 104 PNKTLAAQLYGEMKQFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKDSQINEQIDRMRH 163

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++LLERND I+V+SVSCIYGIGSVE+YS+M+V+L++G  +++ +L+ SLV+ QY+R 
Sbjct: 164 AATQALLERNDVIIVASVSCIYGIGSVETYSRMVVKLELGGEIDRDKLIKSLVELQYRRN 223

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G++I+IFP   ED AWRVS+FG++++ + EF PLTG+K  +++ I +Y
Sbjct: 224 DAAFARGTFRVRGETIDIFPVQNEDRAWRVSLFGDEVDGLIEFDPLTGEKTADLQEITVY 283

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTPRPTLN A+K IK+EL+ +L    K G+LLEA+RL+QR T+DLEMLETTG C+
Sbjct: 284 ANSHYVTPRPTLNQAIKGIKQELREQLDVFTKAGKLLEAERLDQRTTFDLEMLETTGVCK 343

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PG+PPPTLFEY+PED+LL VDESHVT+PQI GM RGD  RK+ LAE+
Sbjct: 344 GIENYSRYLSGRKPGDPPPTLFEYLPEDALLIVDESHVTVPQIGGMERGDHARKSVLAEF 403

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPL F EW+  RP ++ VSATPG WE+E+  G+  EQ+IRPTGLVDP   
Sbjct: 404 GFRLPSCLDNRPLNFAEWDKFRPQSLFVSATPGPWEMERTGGVFAEQVIRPTGLVDPITI 463

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E      +G R+L+T LTKRMAEDLT+Y+ E  IRVRY+HS+V TLE
Sbjct: 464 IRPVEHQVDDLLAECRTTIGKGRRVLVTTLTKRMAEDLTDYMNEAGIRVRYLHSDVDTLE 523

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 524 RIEIIRDLRMGAFDVLIGINLLREGLDIPECSLVAILDADKEGFLRSRTSLIQTIGRAAR 583

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +V+LYAD +T S+  A++ET RRREKQ+  N +H I PQSV++ I +++  +  +D
Sbjct: 584 NVEGRVLLYADKMTDSLTYAVEETARRREKQIAWNTEHGITPQSVRKNISDIVSSVFEQD 643

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T     D        +   A +  L K+M  AA  L FE AAR+RDEI+RL++
Sbjct: 644 YVTIAPDEDTGVAEFVGQDLGAAIAGLEKRMRSAAAELEFETAARLRDEIQRLEA 698


>gi|329114941|ref|ZP_08243697.1| UvrABC system protein B [Acetobacter pomorum DM001]
 gi|326695838|gb|EGE47523.1| UvrABC system protein B [Acetobacter pomorum DM001]
          Length = 749

 Score =  882 bits (2280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/655 (62%), Positives = 518/655 (79%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ ++Y P+GDQP AI +L+ G+ + E+ Q+LLGVTGSGKTF+MAK+IEA Q+P +++A
Sbjct: 44  MEVVSEYEPAGDQPQAIRELVAGVEAGERDQVLLGVTGSGKTFSMAKIIEATQKPTLILA 103

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEK+S INEQIDRMRH
Sbjct: 104 PNKTLAAQLYGEMKQFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKDSQINEQIDRMRH 163

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++LLERND I+V+SVSCIYGIGSVE+YS+M+V+L++G  +++ +L+ SLV+ QY+R 
Sbjct: 164 AATQALLERNDVIIVASVSCIYGIGSVETYSRMVVKLELGGEIDRDKLIKSLVELQYRRN 223

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G++I+IFP   ED AWRVS+FG++++ + EF PLTG+K  +++ I IY
Sbjct: 224 DAAFARGTFRVRGETIDIFPVQNEDRAWRVSLFGDEVDGLIEFDPLTGEKTADLQEITIY 283

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTPRPTLN A+K IK+EL+ +L    K G+LLEA+RL+QR T+DLEMLETTG C+
Sbjct: 284 ANSHYVTPRPTLNQAIKGIKQELREQLDVFTKAGKLLEAERLDQRTTFDLEMLETTGVCK 343

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PG+PPPTLFEY+PED+LL VDESHVT+PQI GM RGD  RK+ LAE+
Sbjct: 344 GIENYSRYLSGRKPGDPPPTLFEYLPEDALLIVDESHVTVPQIGGMERGDHARKSVLAEF 403

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPL F EW+  RP ++ VSATPG WE+E+  G+  EQ+IRPTGLVDP   
Sbjct: 404 GFRLPSCLDNRPLNFAEWDKFRPQSLFVSATPGPWEMERTGGVFAEQVIRPTGLVDPITI 463

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E      +G R+L+T LTKRMAEDLT+Y+ E  IRVRY+HS+V TLE
Sbjct: 464 IRPVEHQVDDLLAECRTTIAKGGRVLVTTLTKRMAEDLTDYMNEAGIRVRYLHSDVDTLE 523

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 524 RIEIIRDLRMGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSRTSLIQTIGRAAR 583

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +V+LYAD +T S+  A++ET RRREKQ+  N +H I PQSV++ I +++  +  +D
Sbjct: 584 NVEGRVLLYADKMTDSLTYAVEETARRREKQMAWNTEHGITPQSVRKHISDIVSSVFEQD 643

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T     D        +   A +  L K+M  AA  L FE AAR+RDEI+RL++
Sbjct: 644 YVTIAPDEDTGVAEFVGQDLGAAIAGLEKRMRSAAAELEFETAARLRDEIQRLEA 698


>gi|294085777|ref|YP_003552537.1| excinuclease ABC subunit B [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665352|gb|ADE40453.1| excinuclease ABC, B subunit [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 732

 Score =  880 bits (2275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/656 (62%), Positives = 511/656 (77%), Gaps = 1/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q+D+ P+GDQP AIA+L++G+   E+ Q+LLGVTGSGKTFT A VI  M+RP +++A
Sbjct: 43  FDLQSDFKPAGDQPTAIAELIEGVKQGERDQVLLGVTGSGKTFTAAHVIREMKRPTLILA 102

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+ FP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRH
Sbjct: 103 PNKTLAAQLYGEMKSLFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRH 162

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER+D I+V+SVSCIYGIGSVE+YS M  ++  G+   ++++L    + QYKR 
Sbjct: 163 SATRSLLERDDVIIVASVSCIYGIGSVETYSTMTQKITSGEDFPRQDMLRKFTELQYKRN 222

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D   +RGTFRV GDS+E+FP+HLED AWR+S+FG+++E I EF PLTG+K  ++ TI ++
Sbjct: 223 DTNFVRGTFRVRGDSVELFPAHLEDRAWRISLFGDEVESIHEFDPLTGEKFASLPTITVF 282

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTPRPTL  A K IK ELK RL EL +  +LLEAQR+EQR  +D+EM+E TG C 
Sbjct: 283 ANSHYVTPRPTLQQACKSIKIELKQRLAELTEANKLLEAQRIEQRTQFDVEMIEATGVCA 342

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLFEY+PE++LL VDESHVT+PQ+  MY+GDF RK+TLAE+
Sbjct: 343 GIENYSRYLSGRGPGEPPPTLFEYLPENALLIVDESHVTVPQLGAMYKGDFARKSTLAEH 402

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW   RP TI VSATPG +E+E+  G+  EQI+RPTGL+DP   
Sbjct: 403 GFRLPSCMDNRPLKFEEWEGFRPQTIYVSATPGKYEMERTGGVFSEQIVRPTGLIDPECI 462

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  E   AA +G R+L+T LTK+MAE L+EY++E  ++VRY+HS++ TLE
Sbjct: 463 VRPTGNQVDDIIAECRDAAAKGQRVLITTLTKKMAEALSEYMFEAGLKVRYLHSDIDTLE 522

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FD+L+GINLLREGLDIPEC LV ILDADKEGFLRSKTSL+QTIGRAAR
Sbjct: 523 RIEIMRDLRLGVFDILIGINLLREGLDIPECALVGILDADKEGFLRSKTSLVQTIGRAAR 582

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +VILY D IT S+Q A+DET RRR KQ   NK H I P+SVK+ I +V+  +  + 
Sbjct: 583 NVEGRVILYGDRITDSMQYALDETNRRRAKQEAWNKAHGITPESVKKDIADVLGSV-YDR 641

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           A         +  +L     K  +  L   M  AA NL FEEAAR+RDEI+R++++
Sbjct: 642 ADHLTPQAGGKDGALVGNNFKTVIADLEASMKDAAANLEFEEAARLRDEIRRMEAA 697


>gi|254294193|ref|YP_003060216.1| excinuclease ABC subunit B [Hirschia baltica ATCC 49814]
 gi|254042724|gb|ACT59519.1| excinuclease ABC, B subunit [Hirschia baltica ATCC 49814]
          Length = 742

 Score =  876 bits (2263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/734 (56%), Positives = 543/734 (73%), Gaps = 31/734 (4%)

Query: 85  SMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQ 144
           S + K ++ +SE        A A L +    LL +  +W PHR       S+    F+++
Sbjct: 5   SKTPKSSKSVSE------APASAFLYEGAEELL-HPSVWKPHRPERQWEKSEGGKLFELK 57

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           ++Y P+GDQP AI +L+ G+ + EK Q+LLGVTGSGKT+TMA+VIE  QRPA+++A NK 
Sbjct: 58  SEYEPAGDQPEAIKELVTGVETDEKDQVLLGVTGSGKTYTMAQVIERTQRPALILAHNKT 117

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
           LAAQLY+EFKNFFP+N+VEYFVSYYDYY PEAYVPRTDTYIEKESSINE IDRMRH+ATR
Sbjct: 118 LAAQLYAEFKNFFPNNSVEYFVSYYDYYMPEAYVPRTDTYIEKESSINEAIDRMRHAATR 177

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           ++LER+D I+V+SVSCIYGIGSVE+YS M   L+   + + +++   LV  QY R D+  
Sbjct: 178 AVLERDDVIIVASVSCIYGIGSVETYSAMTFVLEEAQTRDPRDIAQDLVALQYTRNDVAF 237

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            RGTFR+ GD ++I+P+H ED AW++S FG++IE I EF PLTG+K + +  IK+YANSH
Sbjct: 238 GRGTFRIKGDVLDIWPAHQEDRAWKISFFGDEIETIVEFDPLTGKKSKPLGKIKVYANSH 297

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
           +VTPRPTLN A+K+IKEE+K  +   E EG+LLEAQR++QR  +D+EM+  TGSC  IEN
Sbjct: 298 HVTPRPTLNQAVKHIKEEMKQTVARFEAEGKLLEAQRIQQRTEFDMEMMVATGSCAGIEN 357

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
           YSRYL+GR PGEPPPT FEY+P+++L+FVDESH TIPQI  MY+GD  RK TLAE+GFRL
Sbjct: 358 YSRYLSGRKPGEPPPTFFEYLPDNALVFVDESHQTIPQIGAMYKGDRSRKNTLAEFGFRL 417

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-- 562
           PSC DNRPL+FEEW  +RP T+ VSATPG WELEQ QG+  EQIIRPTGL+DPPVE+R  
Sbjct: 418 PSCKDNRPLKFEEWEAMRPQTVHVSATPGKWELEQTQGVFTEQIIRPTGLIDPPVEVRPV 477

Query: 563 --SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
                 QV+DV  E+    Q+G R L+T LTK+M+EDLT+Y++E+ ++VRYMHS++ T+E
Sbjct: 478 SKDGANQVDDVIAEVKNTTQRGFRSLVTTLTKKMSEDLTDYMHEQGVKVRYMHSDIDTVE 537

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG FD L+GINLLREGLDIPEC  V ILDADKEGFLRS+TSL+QTIGRAAR
Sbjct: 538 RIEIIRDLRLGVFDCLIGINLLREGLDIPECAFVGILDADKEGFLRSETSLVQTIGRAAR 597

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  ++VILYAD +T S++ A+ ETTRRR+ Q  HN+KH I P++V   + ++++ I  + 
Sbjct: 598 NSEARVILYADKVTGSMERAMSETTRRRDIQRAHNEKHGITPKTVVRAVEDIMEDIGGKK 657

Query: 741 AATTNISIDAQQLSLSKKK---------------GKAH-----LKSLRKQMHLAADNLNF 780
            A +++  + +  +    K               GK H     + SL K+M  AA NL F
Sbjct: 658 NAASDLVPNGRDPNKRSAKGVQESKAGVASMAPGGKGHNLAGVIASLEKEMREAAANLEF 717

Query: 781 EEAARIRDEIKRLK 794
           E AAR+RDE+K+L+
Sbjct: 718 ETAARLRDEVKQLR 731


>gi|330813709|ref|YP_004357948.1| excinuclease ABC subunit B [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486804|gb|AEA81209.1| excinuclease ABC subunit B [Candidatus Pelagibacter sp. IMCC9063]
          Length = 714

 Score =  862 bits (2228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/658 (63%), Positives = 522/658 (79%), Gaps = 10/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI QL +G+ + +K Q+LLGVTGSGKTFTMAK+IE + RPAI++A
Sbjct: 29  FKLTSSFTPAGDQPTAIKQLREGLLTNQKDQVLLGVTGSGKTFTMAKIIEELNRPAIILA 88

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FF  NAVEYFVSYYDYY PEAYVPR+DT+IEKES+INEQIDRMRH
Sbjct: 89  PNKTLAAQLYGEMKSFFNENAVEYFVSYYDYYTPEAYVPRSDTFIEKESAINEQIDRMRH 148

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL E++D I+V+SVSCIYG+GS +SYS+M    +  +S  +++++  LV+ QYKR 
Sbjct: 149 SATRSLFEKDDVIIVASVSCIYGLGSPDSYSKMTFTFEKNNSYNREKIIKGLVELQYKRN 208

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG+FRV G++IEIFPSHLED AWR+S+    I  + EF PLTG K  ++  IKIY
Sbjct: 209 DQNFYRGSFRVRGENIEIFPSHLEDRAWRISLDDEKIVSLKEFDPLTGDKTEDLNIIKIY 268

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHY+TPRPT+  A+K IK EL   L +  KE +LLEAQR+++R  +DLEM+E TG+C 
Sbjct: 269 ANSHYITPRPTVQQAIKEIKAELVTTLKKFRKENKLLEAQRIDERTRFDLEMIEATGTCA 328

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR+PGEPPPTLFEY+P+++++FVDESHVT+PQ++GMY+GD  RK TL++Y
Sbjct: 329 GIENYSRFLSGRSPGEPPPTLFEYLPDNAIIFVDESHVTVPQLNGMYKGDHTRKKTLSDY 388

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSCMDNRPL+FEEW+ +R  TI VSATPG+WEL+Q +G+  EQ+IRPTGL DP + 
Sbjct: 389 GFRLPSCMDNRPLKFEEWDMMRSETIFVSATPGNWELDQSKGVFAEQVIRPTGLTDPDIL 448

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A+ QV+D+  E     ++  R+L T LTK+MAEDLTEYL E  I+VRYMHSE+ TLE
Sbjct: 449 IRPAKNQVDDLLSECLKIVKKKQRVLATTLTKKMAEDLTEYLDENGIKVRYMHSEIDTLE 508

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG FDVLVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 509 RIEIIRDLRLGVFDVLVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAAR 568

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  KVILYAD  TKSI+ AI+ET RRR +Q   NKK+NI PQS+++ I ++++ +  +D
Sbjct: 569 NVEGKVILYADKETKSIKKAIEETDRRRSRQELFNKKNNITPQSIQKNIGDILESVYEKD 628

Query: 741 --AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              A  NI I            K HLKSL+K MH++ADNL FE+AA+IRDEIK+L++S
Sbjct: 629 YLNAEKNIEIGGNL--------KKHLKSLKKDMHISADNLEFEKAAKIRDEIKKLENS 678


>gi|23428622|gb|AAM12395.1| excinuclease subunit B [Zymomonas mobilis subsp. mobilis CP4]
          Length = 739

 Score =  829 bits (2141), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/689 (59%), Positives = 510/689 (74%), Gaps = 22/689 (3%)

Query: 113 DNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQL 172
           D P  +N   + PHR  S    ++    F++ +DY P+GDQP AI+ L K I   E+ Q+
Sbjct: 10  DEP--ENHSDFVPHRP-SRPEKTEPSKPFRLVSDYEPAGDQPQAISALCKDIQKGERDQV 66

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           LLGVTGSGKTFTMAKVIE +QRP++++APNKILAAQLY EFK FFP NAVE+FVSYYDYY
Sbjct: 67  LLGVTGSGKTFTMAKVIEKLQRPSLILAPNKILAAQLYGEFKRFFPENAVEFFVSYYDYY 126

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           QPEAYVPRTDTYIEK+S+INE IDRMRH+ATRSLLER D I+V+SVSC+YGIGSV++YS 
Sbjct: 127 QPEAYVPRTDTYIEKDSAINEAIDRMRHAATRSLLEREDVIIVASVSCLYGIGSVDTYSS 186

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
           M  +L  G  V+Q+E++  LV  QYKR ++   RG+FRV GD++EIFPSH ED+AWR+S 
Sbjct: 187 MTFRLLKGQLVDQREIIRRLVALQYKRNEVAFGRGSFRVKGDTLEIFPSHYEDMAWRISF 246

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG++IEEISEF PLTG KI  ++ IKIYANSHYVTP PTL  A   I+ EL  RL E + 
Sbjct: 247 FGDEIEEISEFDPLTGVKIAKLDQIKIYANSHYVTPEPTLKAANNAIRRELDNRLRESK- 305

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSI----ENYSRYLTGRNPGEPPPTLFEYIPED 468
               L+    ++R      +      C        NYSR+LTGR PGEPPPTLFEY+P++
Sbjct: 306 ----LKVNYWKRRFGKAHRIRSGNDGCNRCLFRYSNYSRFLTGRAPGEPPPTLFEYLPDN 361

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +LLFVDESH TIPQI+GM RGD+ RK TLA+YGFRLPSC+DNRPLRFEEWN +RP  + V
Sbjct: 362 ALLFVDESHQTIPQINGMSRGDYRRKTTLADYGFRLPSCIDNRPLRFEEWNAMRPQNVYV 421

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG WELEQ  G+ VEQIIRPTGLVDP +E+R    QV+++  E    A  G R L+T
Sbjct: 422 SATPGPWELEQTGGVFVEQIIRPTGLVDPAIEVRPIEEQVDNLIFEAKKTAAAGWRSLVT 481

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
            LTKRMAEDLTEY+YE  ++VRYMHS+V+T+ERIE+IRDLRLG +DVL+GINLLREGLDI
Sbjct: 482 TLTKRMAEDLTEYMYEAGLKVRYMHSDVETIERIELIRDLRLGVYDVLIGINLLREGLDI 541

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECGLVA+LDADKEGFLRS+TSLIQTIGRAARN   +VILY D IT S+  A+ ET RRR
Sbjct: 542 PECGLVAVLDADKEGFLRSETSLIQTIGRAARNAEGRVILYGDKITGSMARAMAETERRR 601

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILL---EDAATTNISIDAQQLSLSKKKGKAHLK 765
            KQ+  NK HNI P +VK ++ +++    +    +AA T  + D + L+ S       + 
Sbjct: 602 IKQIAWNKAHNITPATVKRQVDDIVGHFGVVNSSEAAATIENHDPKVLARS-------IS 654

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              K+M  AA NL FE+AA++RD + +LK
Sbjct: 655 ETEKEMLEAAANLEFEKAAQLRDVLHQLK 683


>gi|117924009|ref|YP_864626.1| excinuclease ABC subunit B [Magnetococcus sp. MC-1]
 gi|117607765|gb|ABK43220.1| Excinuclease ABC subunit B [Magnetococcus sp. MC-1]
          Length = 675

 Score =  819 bits (2115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/665 (60%), Positives = 499/665 (75%), Gaps = 9/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AI +L+ G+    K Q+LLGVTGSGKTFTMA +I+ ++RPA+++A
Sbjct: 8   FELISDYQPCGDQPQAIEKLVAGLREGRKDQVLLGVTGSGKTFTMANIIQRLERPAVILA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K+FFP+NAVEYFVSYYDYYQPEAYVPRTDT+IEK+SSINEQIDRMRH
Sbjct: 68  HNKTLAGQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPRTDTFIEKDSSINEQIDRMRH 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATR+LL R D I+V+SVSCIYG+GS ESY+ M ++L++   +EQ+E++  LV  QY+R 
Sbjct: 128 AATRALLTRQDVIIVASVSCIYGLGSPESYAAMSLKLEVEQEIEQREIMRKLVAMQYQRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EIFP+H +  A RV +FG+ I+ ISE  PLTG+          +
Sbjct: 188 DIDFQRGTFRVRGDTLEIFPAHEDARAIRVELFGDVIDRISEVDPLTGENFGPAPHASFF 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT R T+  A++ IK ELK RL    ++G LLEAQRLE R   DLEM++  G C 
Sbjct: 248 PASHYVTQRSTIVRAVEGIKAELKERLESFNQQGYLLEAQRLENRTRQDLEMMQELGYCT 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGEPPPTLFEY+PE++LLFVDESHVT+ Q+  MYRGD  RK+TL EY
Sbjct: 308 GIENYSRFLTGRQPGEPPPTLFEYLPENALLFVDESHVTVSQVRAMYRGDRSRKSTLVEY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+FEEW  +RP TI VSATP  WELEQ QG +VEQIIRPTGL+DPPVE
Sbjct: 368 GFRLPSAMDNRPLQFEEWEQMRPQTIYVSATPALWELEQAQGQVVEQIIRPTGLMDPPVE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  EI      G R+L T LTKRMAEDLT+YL + +I+VRY+HS++ TLE
Sbjct: 428 IRPVEHQVDDLIHEIKKVIATGYRVLATTLTKRMAEDLTDYLVDLDIKVRYLHSDIDTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVL+GINLLREGLDIPE GLVAILDADKEGFLRS+TSL+QTIGRAAR
Sbjct: 488 RMEIIRDLRLGAFDVLIGINLLREGLDIPEVGLVAILDADKEGFLRSETSLVQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +VILYAD  T SI+ A+ ET RRR  Q  +N++HNI PQSV   + +++  +   D
Sbjct: 548 NVEGRVILYADKRTGSIERALAETDRRRAIQQHYNEQHNITPQSVVRGVADLMGEMTGGD 607

Query: 741 AATTNIS------IDAQQLSLSKKKGKA---HLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           + + + +      + A Q  +    GKA    +++L K+MH AA  LNFE+AA  RD+I 
Sbjct: 608 STSKSAAKGRGKQVAALQEPVVPLHGKALEKRIRALEKEMHDAASALNFEQAALFRDQII 667

Query: 792 RLKSS 796
            L+ +
Sbjct: 668 ALEKA 672


>gi|34580788|ref|ZP_00142268.1| excinuclease ABC subunit B [Rickettsia sibirica 246]
 gi|28262173|gb|EAA25677.1| excinuclease ABC subunit B [Rickettsia sibirica 246]
          Length = 661

 Score =  813 bits (2101), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/661 (59%), Positives = 493/661 (74%), Gaps = 13/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI +++ G+ S+++ Q+LLG+TGSGKTFTMA +IE   RP ++MA
Sbjct: 4   FSIISEYKPAGDQPKAIDEIIAGLSSKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID MRH
Sbjct: 64  HNKTLAAQIYSEMKSLFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDLMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATRSLLER D IVVSSVSCIYG+GS + Y QM+V L+ G S  + +LL+ L+  QY+R 
Sbjct: 124 AATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMMVNLEPGQSYPRDQLLNDLINLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DIG  RG FRV GD+I+IFPSH  D AWR+S FGN++E I EF PLTG+K+  ++   ++
Sbjct: 184 DIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLAKLDKTMVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSH+V P+ T+N A+  I+EEL+ RL  L+ + + LE QRL QR  YDLEML  TGSC+
Sbjct: 244 GNSHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGSCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+ TGRNPGEPPPTLFEY+PED+LLFVDESHV++PQI  MY GD  RK  L E+
Sbjct: 304 GVENYSRFFTGRNPGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKKVLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW+  RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP   
Sbjct: 364 GFRLPSALDNRPLKFEEWDKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDPECI 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+ A  QVED+  EI     QG R+L+T LT++MAEDLT YL E   +  Y+HS V TLE
Sbjct: 424 IKPATNQVEDLISEIQTTIAQGFRVLVTTLTQKMAEDLTAYLQELKYKTSYLHSNVHTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLR G  DVLVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-----MEVIDP 735
           N   +VILYAD +TKSI  A+ ET RRR+ Q E+N+KH I P+++   I      E ID 
Sbjct: 544 NSAGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGIIPKTINRAIHTLAEFEKIDS 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            L +  A T        L  +  K K H+  L+K+M  AA NL FE+A ++RD++K L+ 
Sbjct: 604 KLDKKQAHT--------LFDNPAKLKTHIDKLKKEMLKAASNLEFEQAIKLRDQLKTLEE 655

Query: 796 S 796
           +
Sbjct: 656 A 656


>gi|15892189|ref|NP_359903.1| excinuclease ABC subunit B [Rickettsia conorii str. Malish 7]
 gi|21542287|sp|Q92J03|UVRB_RICCN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|15619321|gb|AAL02804.1| excinuclease ABC subunit B [Rickettsia conorii str. Malish 7]
          Length = 661

 Score =  812 bits (2098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/661 (59%), Positives = 492/661 (74%), Gaps = 13/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI +++ G+ S+++ Q+LLG+TGSGKTFTMA +IE   RP ++MA
Sbjct: 4   FSIISEYKPAGDQPKAIDEIIAGLSSKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID MRH
Sbjct: 64  HNKTLAAQIYSEMKSLFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDLMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATRSLLER D IVVSSVSCIYG+GS + Y QM+V L+ G S  + +LL+ L+  QY+R 
Sbjct: 124 AATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMMVNLEPGQSYPRDQLLNDLINLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DIG  RG FRV GD+I+IFPSH  D AWR+S FGN++E I EF PLTG+K+  ++   ++
Sbjct: 184 DIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLAKLDKAMVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSH+V P+ T+N A+  I+EEL+ RL  L+ + + LE QRL QR  YDLEML  TGSC+
Sbjct: 244 GNSHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGSCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+ TGRN GEPPPTLFEY+PED+LLFVDESHV++PQI  MY GD  RK  L E+
Sbjct: 304 GVENYSRFFTGRNAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKKVLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW+  RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP   
Sbjct: 364 GFRLPSALDNRPLKFEEWDKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDPECI 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+ A  QVED+  EI     QG R+L+T LTK+MAEDLT YL E   +  Y+HS V TLE
Sbjct: 424 IKPATNQVEDLISEIQTTIAQGFRVLVTTLTKKMAEDLTAYLQELKYKTSYLHSNVHTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLR G  DVLVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-----MEVIDP 735
           N   +VILYAD +TKSI  A+ ET RRR+ Q E+N+KH I P+++   I      E ID 
Sbjct: 544 NSAGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGIIPKTINRAIHALAEFEKIDS 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            L +  A T        L  +  K K H+  L+K+M  AA NL FE+A ++RD++K L+ 
Sbjct: 604 KLDKKQAHT--------LFDNPAKLKTHIDKLKKEMLKAASNLEFEQAVKLRDQLKTLEE 655

Query: 796 S 796
           +
Sbjct: 656 A 656


>gi|239948098|ref|ZP_04699851.1| excinuclease ABC subunit B [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922374|gb|EER22398.1| excinuclease ABC subunit B [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 663

 Score =  812 bits (2097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/656 (59%), Positives = 493/656 (75%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI +++ G++S+++ Q+LLG+TGSGKTFTMA +IE   RP ++MA
Sbjct: 4   FSIISEYKPAGDQPKAIDEIIAGLNSKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID MRH
Sbjct: 64  HNKTLAAQIYSEMKSIFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDLMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D IVVSSVSCIYG+GS + Y QM V L+ G S  + +LL+ L+  QY+R 
Sbjct: 124 SATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMTVNLEPGQSYPRDKLLNDLINLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DIG  RG FRV GD+I+IFPSH  D AWR+S FGN++E I EF PLTG+K+  ++   ++
Sbjct: 184 DIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGKKLAKLDKAMVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSH+V P+ T+N+A+  I+EEL+ RL  L+ + + LE QRL QR  YDLEML  TGSC+
Sbjct: 244 GNSHFVMPQETVNSAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGSCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+ TGRN G+PPPTLFEY+PED+LLFVDESHV++PQI  MY GD  RK  L E+
Sbjct: 304 GVENYSRFFTGRNAGKPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKEVLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW   RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP   
Sbjct: 364 GFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFELEETDGTVVELIIRPTGLLDPECI 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+ A  QVED+  EI     +G R+L+T LTK+MAEDLT YL +   +  Y+HS V TLE
Sbjct: 424 IKPATNQVEDLISEIQTTISKGFRVLVTTLTKKMAEDLTAYLQDLKYKTSYLHSNVHTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLR G  D+LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VILYAD +TKSI  A+ ET RRR+ Q E+N+KH I P+++   I  + +   LE 
Sbjct: 544 NSEGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGIIPKTINRAIHALAE---LEK 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +      A  L  +  K KAH+  L+K M  AA+NL FE+AA++RD++K L+ +
Sbjct: 601 IDSKLDKKQAHTLFDNPAKLKAHIDKLKKDMLKAANNLEFEQAAKLRDQLKTLEEA 656


>gi|157828144|ref|YP_001494386.1| excinuclease ABC subunit B [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932843|ref|YP_001649632.1| excinuclease ABC subunit B [Rickettsia rickettsii str. Iowa]
 gi|189037994|sp|B0BWK0|UVRB_RICRO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189037995|sp|A8GR53|UVRB_RICRS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|157800625|gb|ABV75878.1| excinuclease ABC subunit B [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165907930|gb|ABY72226.1| excinuclease ABC subunit B [Rickettsia rickettsii str. Iowa]
          Length = 661

 Score =  812 bits (2097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/661 (59%), Positives = 492/661 (74%), Gaps = 13/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI +++ G+ S+++ Q+LLG+TGSGKTFTMA +IE   RP ++MA
Sbjct: 4   FSIISEYKPAGDQPKAIDEIIAGLSSKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID MRH
Sbjct: 64  HNKTLAAQIYSEMKSLFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDLMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATRSLLER D IVVSSVSCIYG+GS + Y QM+V L+ G S  + +LL+ L+  QY+R 
Sbjct: 124 AATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMVVNLEPGQSYLRDQLLNDLINLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DIG  RG FRV GD+I+IFPSH  D AWR+S FGN++E I EF PLTG+K+  ++   ++
Sbjct: 184 DIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLAKLDKAIVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSH+V P+ T+N A+  I+EEL+ RL  L+ + + LE QRL QR  YDLEML  TGSC+
Sbjct: 244 GNSHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGSCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+ TGRN GEPPPTLFEY+PED+LLFVDESHV++PQI  MY GD  RK  L E+
Sbjct: 304 GVENYSRFFTGRNAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKKVLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW+  RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP   
Sbjct: 364 GFRLPSALDNRPLKFEEWDKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDPECI 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+ A  QVED+  EI     QG R+L+T LTK+MAEDLT YL E   +  Y+HS V TLE
Sbjct: 424 IKPATNQVEDLISEIQTTIAQGFRVLVTTLTKKMAEDLTAYLQELKYKTSYLHSNVHTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLR G  DVLVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-----MEVIDP 735
           N   +VILYAD +TKSI  A+ ET RRR+ Q E+N+KH I P+++   I      E ID 
Sbjct: 544 NSAGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGIIPKTINRAIHALAEFEKIDS 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            L +  A T        L  +  K K H+  L+K+M  AA NL FE+A ++RD++K L+ 
Sbjct: 604 KLDKKQAHT--------LFDNPAKLKTHIDKLKKEMLKAASNLEFEQAVKLRDQLKTLEE 655

Query: 796 S 796
           +
Sbjct: 656 A 656


>gi|67459452|ref|YP_247076.1| excinuclease ABC subunit B [Rickettsia felis URRWXCal2]
 gi|75536134|sp|Q4UKL6|UVRB_RICFE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|67004985|gb|AAY61911.1| Excinuclease ABC subunit B [Rickettsia felis URRWXCal2]
          Length = 661

 Score =  811 bits (2096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/656 (59%), Positives = 493/656 (75%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI +++ G++S+++ Q+LLG+TGSGKTFTMA +IE   RP ++MA
Sbjct: 4   FSIISEYKPAGDQPKAIDEIIAGLNSKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID MRH
Sbjct: 64  HNKTLAAQIYSEMKSIFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDLMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D IVVSSVSCIYG+GS + Y QM V L+ G S  + +LL+ L+  QY+R 
Sbjct: 124 SATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMTVNLEPGKSYPRDKLLNDLINLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DIG  RG FRV GD+I+IFPSH  D AWR+S FGN++E I EF PLTG+K+  ++   ++
Sbjct: 184 DIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLAKLDKAMVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSH+V P+ T+N+A+  I+EEL+ RL  L+ + + LE QRL QR  YDLEML  TGSC+
Sbjct: 244 GNSHFVMPQETVNSAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGSCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+ TGRN GEPPPTLFEY+PED+LLFVDESHV++PQI  MY GD  RK  L E+
Sbjct: 304 GVENYSRFFTGRNAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKEVLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW   RP T+ VSATPG +ELE+    +VE IIRPTGL+DP   
Sbjct: 364 GFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFELEETGDTVVELIIRPTGLLDPECI 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+ A  QVED+  EI     +G R+L+T LTK+MAEDLT YL E   +  Y+HS + TLE
Sbjct: 424 IKPATNQVEDLIGEIQATIAKGFRVLVTTLTKKMAEDLTAYLQELKYKTSYLHSNIHTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLR G  D+LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VILYAD +TKSI  A+ ET+RRR+ Q E+N+KH I P+++   I  + +   LE 
Sbjct: 544 NSEGRVILYADKMTKSIDKAMSETSRRRQIQQEYNEKHGIIPKTINRAIHALAE---LEK 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +      A  L  +  K KAH++ L+K M  AA NL FE+AA++RD++K L+ +
Sbjct: 601 VDSKLDKKQAHTLFDNPAKLKAHIEKLKKDMLKAASNLEFEQAAKLRDQLKTLEEA 656


>gi|157803395|ref|YP_001491944.1| excinuclease ABC subunit B [Rickettsia canadensis str. McKiel]
 gi|189037992|sp|A8EXS6|UVRB_RICCK RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|157784658|gb|ABV73159.1| excinuclease ABC subunit B [Rickettsia canadensis str. McKiel]
          Length = 661

 Score =  811 bits (2095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/661 (60%), Positives = 492/661 (74%), Gaps = 13/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI +++ G++S+++ Q+LLG+TGSGKTFTMA +I  M RP ++MA
Sbjct: 4   FSIISEYKPAGDQPKAIDEIIAGLNSKKRSQMLLGITGSGKTFTMANIIARMNRPTLIMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQ+YSE K  FP NA+EYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID MRH
Sbjct: 64  HNKTLAAQIYSEMKLMFPKNAIEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDLMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D IVVSSVSCIYG+GS   Y QM V L+ G S  + +LLS LV  QY+R 
Sbjct: 124 SATRSLLERRDVIVVSSVSCIYGLGSPNLYYQMTVNLESGKSYPRDKLLSDLVNLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DIG  RG FRV GD+I+IFPSH  D AWR+S  GN++E I EF PLTG K+  ++   ++
Sbjct: 184 DIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFVGNELEYIHEFDPLTGTKLAKLDKAMVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSH+V P+ T+N A+  I+ EL+ RL  L+ + ++LE QRL QR  YDLEML TTGSC+
Sbjct: 244 GNSHFVIPQETVNKAISEIEVELQKRLELLKSQNKILETQRLNQRTQYDLEMLTTTGSCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGRN GEPPPTLFEY+P+D+LLFVDESHV++PQI  MY GD  RK  L E+
Sbjct: 304 GIENYSRFLTGRNAGEPPPTLFEYLPKDALLFVDESHVSVPQIRAMYNGDRARKKVLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW   RP TI VSATPG +ELE+  G++VE IIRPTGL+DP   
Sbjct: 364 GFRLPSALDNRPLKFEEWEKFRPQTIFVSATPGPFELEETGGLVVELIIRPTGLLDPECI 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+ A  QVED+  EI     +GLR+L+T LTK+MAEDLT YL E   +  Y+HS V TLE
Sbjct: 424 IKPATNQVEDLISEIQTTIAKGLRVLVTTLTKKMAEDLTTYLQELKYKSSYLHSNVHTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLR G  ++LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RLEILRDLRQGTINILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-----MEVIDP 735
           N   +VILYAD ITKSI  A+ ET RRR+ Q E+N+KH I PQ++   I     ++ ID 
Sbjct: 544 NSEGRVILYADKITKSIDKAVSETMRRRQIQQEYNEKHGIIPQTINRTIYALTALKKIDS 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            L  D    +I  D      +  K KAH+  L+K M  AA NL FE+A ++RD++K L+ 
Sbjct: 604 KL--DKKQAHILFD------NPAKLKAHIYKLKKAMLKAASNLEFEQATKLRDQLKNLEE 655

Query: 796 S 796
           +
Sbjct: 656 A 656


>gi|229586447|ref|YP_002844948.1| excinuclease ABC subunit B [Rickettsia africae ESF-5]
 gi|259710331|sp|C3PMP5|UVRB_RICAE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|228021497|gb|ACP53205.1| Excinuclease ABC subunit B [Rickettsia africae ESF-5]
          Length = 661

 Score =  811 bits (2095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/661 (59%), Positives = 492/661 (74%), Gaps = 13/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI +++ G+ S+++ Q+LLG+TGSGKTFTMA +IE   RP ++MA
Sbjct: 4   FSIISEYKPAGDQPKAIDEIIAGLSSKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID MRH
Sbjct: 64  HNKTLAAQIYSEMKSLFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDLMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATRSLLER D IVVSSVSCIYG+GS + Y QM+V L+ G S  + +LL+ L+  QY+R 
Sbjct: 124 AATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMMVNLEPGQSYPRDQLLNDLINLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DIG  RG FRV GD+I+IFPSH  D AWR+S FGN++E I EF PLTG+K+  ++   ++
Sbjct: 184 DIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLAKLDKAMVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSH+V P+ T+N A+  I+EEL+ RL  L+ + + LE QRL QR  YDLEML  TGSC+
Sbjct: 244 GNSHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGSCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+ TGRN GEPPPTLFEY+PED+LLFVDESHV++PQI  MY GD  RK  L E+
Sbjct: 304 GVENYSRFFTGRNAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKKVLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW+  RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP   
Sbjct: 364 GFRLPSALDNRPLKFEEWDKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDPECI 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+ A  QVED+  E+     QG R+L+T LT++MAEDLT YL E   +  Y+HS V TLE
Sbjct: 424 IKPATNQVEDLISEMQTTIAQGFRVLVTTLTQKMAEDLTAYLQELKYKTSYLHSNVHTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLR G  DVLVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-----MEVIDP 735
           N   +VILYAD +TKSI  A+ ET RRR+ Q E+N+KH I P+++   I      E ID 
Sbjct: 544 NSAGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGITPKTINRAIHALAEFEKIDS 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            L +  A T        L  +  K K H+  L+K+M  AA NL FE+A ++RD++K L+ 
Sbjct: 604 KLDKKQAHT--------LFDNAAKLKTHIDKLKKEMLKAASNLEFEQAVKLRDQLKTLEE 655

Query: 796 S 796
           +
Sbjct: 656 A 656


>gi|238650441|ref|YP_002916293.1| excinuclease ABC subunit B [Rickettsia peacockii str. Rustic]
 gi|259710332|sp|C4K0Z4|UVRB_RICPU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238624539|gb|ACR47245.1| excinuclease ABC subunit B [Rickettsia peacockii str. Rustic]
          Length = 661

 Score =  811 bits (2094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/661 (59%), Positives = 493/661 (74%), Gaps = 13/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI +++ G+ S+++ Q+LLG+TGSGKTFTMA +IE   RP ++MA
Sbjct: 4   FSIISEYKPAGDQPKAIDEIIAGLSSKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID MRH
Sbjct: 64  HNKTLAAQIYSEMKSLFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDLMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATRSLLER D IVVSSVSCIYG+GS + Y QM+V L+ G S  + +LL+ L+  QY+R 
Sbjct: 124 AATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMMVNLEPGQSYLRDQLLNDLINLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DIG  RG FRV GD+I+IFPSH  D AWR+S FGN++E I EF PLTG+K+  ++   ++
Sbjct: 184 DIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLAKLDKAMVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSH+V P+ T+N A+  I+EEL+ RL  L+ + + LE QRL QR  YDLEML  TGSC+
Sbjct: 244 GNSHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGSCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+ TGR+ GEPPPTLFEY+PED+LLFVDESHV++PQI  MY GD  RK  L E+
Sbjct: 304 GVENYSRFFTGRHAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKKVLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW+  RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP   
Sbjct: 364 GFRLPSALDNRPLKFEEWDKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDPECI 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+ A  QVED+  EI     QG R+L+T LTK+MAEDLT YL E   +  Y+HS V TLE
Sbjct: 424 IKPATNQVEDLISEIQTTIAQGFRVLVTTLTKKMAEDLTAYLQELKYKTSYLHSNVHTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLR G  DVLVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-----MEVIDP 735
           N   +VILYAD +TKSI  A+ ET RRR+ Q E+N+KH I P+++   I      E ID 
Sbjct: 544 NSAGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGIIPKTINRAIHALAEFEKIDS 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            L +  A T        L  +  K K H+  L+K+M  AA NL FE+A ++RD++K L++
Sbjct: 604 KLDKKQAHT--------LFDNPAKLKTHIDKLKKEMLKAASNLEFEQAVKLRDQLKTLEA 655

Query: 796 S 796
           +
Sbjct: 656 A 656


>gi|157964268|ref|YP_001499092.1| excinuclease ABC subunit B [Rickettsia massiliae MTU5]
 gi|189037993|sp|A8F0V9|UVRB_RICM5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|157844044|gb|ABV84545.1| Excinuclease ABC subunit B [Rickettsia massiliae MTU5]
          Length = 661

 Score =  806 bits (2081), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/661 (59%), Positives = 490/661 (74%), Gaps = 13/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI +++ G+ S+++ Q+LLG+TGSGKTFTMA +IE   RP ++MA
Sbjct: 4   FSIISEYKPAGDQPKAIDEIIAGLSSKKRSQILLGITGSGKTFTMANIIERTNRPTLIMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID MRH
Sbjct: 64  HNKTLAAQIYSEMKSIFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDLMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATRSLLER D IVVSSVSCIYG+GS + Y QM+V L+ G S  + +LL+ L+  QY+R 
Sbjct: 124 AATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMMVNLEPGQSYPRDQLLNDLINLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DIG  RG FRV GD+I+IFPSH  + AWR+S FGN++E I EF PLTG K+  ++   ++
Sbjct: 184 DIGFERGCFRVKGDNIDIFPSHYSNKAWRLSFFGNELEYIHEFDPLTGAKLAKLDKAMVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSH+V P+ T+N A+  I+EEL+ RL  L+ + + LE QRL QR  YDLEML  TG+C+
Sbjct: 244 GNSHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGNCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+ TGRN GEPPPTLFEY+PED+LLFVDESHV++PQI  MY GD  RK  L E+
Sbjct: 304 GVENYSRFFTGRNAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKEVLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW   RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP   
Sbjct: 364 GFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDPECI 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+ A  Q+ED+  EI     +G R+L+T LTK+MAEDLT YL E   +  Y+HS V TLE
Sbjct: 424 IKPATNQIEDLISEIQTTIAKGFRVLVTTLTKKMAEDLTAYLQELKYKTSYLHSHVHTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLR G  D+LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-----MEVIDP 735
           N   +VILYAD +TKSI  A+ ET RRR+ Q E+N KH I P+++   I      E ID 
Sbjct: 544 NSEGRVILYADKMTKSIDKAVSETLRRRQIQQEYNAKHGIIPKTINRTIHALAEFEKIDS 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            L +  A T        L  +  K K H+  L+K+M  AA NL FE+AA++RD++K L+ 
Sbjct: 604 KLDKKQAHT--------LFDNPAKLKTHIDKLKKEMLKAASNLEFEQAAKLRDQLKTLEE 655

Query: 796 S 796
           +
Sbjct: 656 A 656


>gi|157826730|ref|YP_001495794.1| excinuclease ABC subunit B [Rickettsia bellii OSU 85-389]
 gi|189037991|sp|A8GV86|UVRB_RICB8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|157802034|gb|ABV78757.1| excinuclease ABC subunit B [Rickettsia bellii OSU 85-389]
          Length = 661

 Score =  805 bits (2080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/656 (59%), Positives = 489/656 (74%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +DY P+GDQP AI +++KG++++++ Q+LLG+TGSGKTFTMA +IE   RP ++MA
Sbjct: 4   FSIISDYKPAGDQPKAIDEIIKGLNNKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+P+TD +IEK+SSINEQID MRH
Sbjct: 64  HNKTLAAQIYSEMKSIFPKNAVEYFVSYYDYYQPEAYIPKTDVFIEKDSSINEQIDLMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D IVVSSVSCIYG+GS + Y QM V L+ G S  + +LL+ LV  QY+R 
Sbjct: 124 SATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMTVNLEPGKSYPRDKLLNDLVNLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DIG  RG FRV GD++++FPSH  D AWR+S FGN++E I EF PLTG+K+  ++   IY
Sbjct: 184 DIGFERGCFRVKGDNVDVFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLVKLDKAIIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSH+V P+ T+N A+  I+EEL+ R+  L+ + +LLE QR+ QR  YDLEML  TGSC+
Sbjct: 244 GNSHFVMPKETVNKAISEIEEELQKRIAFLKSQDKLLETQRINQRTQYDLEMLTETGSCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+ TGR  GEPPPTLFEY+P+D+LLFVDESHV++PQI  MY GD  RK  L E+
Sbjct: 304 GVENYSRFFTGRKAGEPPPTLFEYLPKDALLFVDESHVSVPQIRAMYNGDRARKEVLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW+  RP T+ VSATP  +EL +  G +VE IIRPTGL+DP   
Sbjct: 364 GFRLPSALDNRPLKFEEWDNFRPQTVFVSATPSLFELNETGGEVVELIIRPTGLLDPECI 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+ A  QVED+  EI     +G  +L+T LTK+MAEDLT YL E   +  Y+HS V TLE
Sbjct: 424 IKPATNQVEDLVGEIQSTIAKGFCVLVTTLTKKMAEDLTNYLQELKYKTSYLHSNVHTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLR G  D+LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VILYAD +TKSI  AI ET RRR  Q EHN+K+ I P+++   I  + +   LE 
Sbjct: 544 NSEGRVILYADKMTKSIDKAISETMRRRTIQQEHNEKYGIIPKTINRTIHALAE---LEK 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +         L  +  K KAH+  LRK+M  AA NL FE+AA++RD++K L+ +
Sbjct: 601 VDSKLDKKQTHNLFENPAKLKAHIDKLRKEMLKAASNLEFEQAAKLRDQLKTLEEA 656


>gi|91205909|ref|YP_538264.1| excinuclease ABC subunit B [Rickettsia bellii RML369-C]
 gi|122425348|sp|Q1RHI9|UVRB_RICBR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|91069453|gb|ABE05175.1| Excinuclease ABC subunit B [Rickettsia bellii RML369-C]
          Length = 661

 Score =  805 bits (2078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/656 (59%), Positives = 489/656 (74%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +DY P+GDQP AI +++KG++++++ Q+LLG+TGSGKTFTMA +IE   RP ++MA
Sbjct: 4   FSIISDYKPAGDQPKAIDEIIKGLNNKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+P+TD +IEK+SSINEQID MRH
Sbjct: 64  HNKTLAAQIYSEMKSIFPKNAVEYFVSYYDYYQPEAYIPKTDVFIEKDSSINEQIDLMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D IVVSSVSCIYG+GS + Y QM V L+ G S  + +LL+ LV  QY+R 
Sbjct: 124 SATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMTVNLEPGKSYPRDKLLNDLVNLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DIG  RG FRV GD++++FPSH  D AWR+S FGN++E I EF PLTG+K+  ++   IY
Sbjct: 184 DIGFERGCFRVKGDNVDVFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLVKLDKAIIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSH+V P+ T+N A+  I+EEL+ R+  L+ + +LLE QR+ QR  YDLEML  TGSC+
Sbjct: 244 GNSHFVMPKETVNKAISEIEEELQKRIAFLKSQDKLLETQRINQRTQYDLEMLTETGSCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+ TGR  GEPPPTLFEY+P+D+LLFVDESHV++PQI  MY GD  RK  L E+
Sbjct: 304 GVENYSRFFTGRKAGEPPPTLFEYLPKDALLFVDESHVSVPQIRAMYNGDRARKEVLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW+  RP T+ VSATP  +EL +  G +VE IIRPTGL+DP   
Sbjct: 364 GFRLPSALDNRPLKFEEWDNFRPQTVFVSATPSLFELNETGGEVVELIIRPTGLLDPECI 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+ A  QVED+  EI     +G  +L+T LTK+MAEDLT YL E   +  Y+HS + TLE
Sbjct: 424 IKPATNQVEDLVGEIQSTIAKGFCVLVTTLTKKMAEDLTNYLQELKYKTSYLHSNIHTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLR G  D+LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VILYAD +TKSI  AI ET RRR  Q EHN+K+ I P+++   I  + +   LE 
Sbjct: 544 NSEGRVILYADKMTKSIDKAISETMRRRTIQQEHNEKYGIIPKTINRTIHALAE---LEK 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +         L  +  K KAH+  LRK+M  AA NL FE+AA++RD++K L+ +
Sbjct: 601 VDSKLDKKQTHNLFENPAKLKAHIDKLRKEMLKAASNLEFEQAAKLRDQLKTLEEA 656


>gi|114320247|ref|YP_741930.1| excinuclease ABC subunit B [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226641|gb|ABI56440.1| Excinuclease ABC subunit B [Alkalilimnicola ehrlichii MLHE-1]
          Length = 675

 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/662 (58%), Positives = 502/662 (75%), Gaps = 11/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+Q+ + P+GDQP AIA L++G+++ E+ Q LLGVTGSGKTFTMA VI+A+QRPA+V+A
Sbjct: 5   FQLQSRFQPAGDQPTAIASLVEGLNAGERHQTLLGVTGSGKTFTMANVIQAVQRPAMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E + FFP N VEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMREFFPKNRVEYFVSYYDYYQPEAYVPASDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D I+V+SVS IYG+G  +SY  M++ L  G++++Q+++L  L + QY R 
Sbjct: 125 SATKAILERQDTIIVASVSSIYGLGDPQSYMAMLLHLVRGETIDQRQILRRLAEMQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGT+R  G+ I+IFP+  ED A RV +F ++IEE+S F PLTG+ +R V  + IY
Sbjct: 185 DMDFTRGTYRARGEVIDIFPADAEDEAVRVELFDDEIEELSHFDPLTGEVLRRVPRLTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A+  IKEEL+ RL EL    +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRGQVLRAIDAIKEELRDRLAELRAADKLVEAQRLEQRTLFDLEMMHELGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+PED+++F+DESHVTIPQ+ GMY+GD  RK TL +Y
Sbjct: 305 GIENYSRHLSGRAPGEPPPTLFDYVPEDAVVFIDESHVTIPQLGGMYKGDRSRKQTLVDY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW  L P  ++VSATPG WE E  Q  +VEQ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLKFEEWLRLAPQCVLVSATPGPWEHEHSQR-VVEQVVRPTGLLDPEVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A +QV+DVY EI   A++  R+L+T LTKRMAEDLTEYL+E  +RVRY+HS+V T+E
Sbjct: 424 VRPALSQVDDVYGEITERARRDERVLVTTLTKRMAEDLTEYLHENGVRVRYLHSDVDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RTEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----PI 736
           N+  K ILY D IT S++ AIDET RRR KQ  HN+ H I P+ V++ + ++++    PI
Sbjct: 544 NLGGKAILYGDEITNSMRRAIDETERRRAKQQAHNEAHGITPKGVRKDVADIMERGGAPI 603

Query: 737 LLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
               A    I   A++ +     +  +    +K L KQM   A NL FEEAA++RDEIKR
Sbjct: 604 --PGAPRGRIDKVAEEAAKYGRYTPAEAVKRIKQLEKQMREHARNLEFEEAAQLRDEIKR 661

Query: 793 LK 794
           L+
Sbjct: 662 LE 663


>gi|157825404|ref|YP_001493124.1| excinuclease ABC subunit B [Rickettsia akari str. Hartford]
 gi|189037990|sp|A8GMJ1|UVRB_RICAH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|157799362|gb|ABV74616.1| excinuclease ABC subunit B [Rickettsia akari str. Hartford]
          Length = 661

 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/656 (58%), Positives = 491/656 (74%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI +++ G++S+++ Q+LLG+TGSGKTFTMA +IE   RP ++MA
Sbjct: 4   FSLISEYKPAGDQPKAIDEIIAGLNSKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINE ID MRH
Sbjct: 64  HNKTLAAQIYSEMKSIFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEHIDLMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D IVV+SVSCIYG+GS + Y QM V L+ G S  + +LL+ L+  QYKR 
Sbjct: 124 SATRSLLERRDVIVVASVSCIYGLGSPDLYYQMTVNLEPGKSYPRDKLLNDLINLQYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+G  RG FRV GD+I+IFPSH  D AWR+S F N++E I EF PLTG+K+  ++   ++
Sbjct: 184 DMGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFSNELEYIHEFDPLTGEKLAKLDKAIVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SH+V P+ T+N A+  I+EEL+ RL  L+ + +LLE QRL QR  YDLEML  TGSC+
Sbjct: 244 GHSHFVMPQDTVNNAISGIEEELQKRLEFLKSQNKLLETQRLNQRTQYDLEMLTETGSCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+ TGRN GEPPPTLFEY+P+D+LLFVDESHV++PQI  MY  D  RK  L E+
Sbjct: 304 GVENYSRFFTGRNAGEPPPTLFEYLPKDALLFVDESHVSVPQIKAMYNSDRARKEVLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW   RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP   
Sbjct: 364 GFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDPECI 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+ A  QVED+  EI     +GLR+L+T LTK+MAEDLT YL E   +  Y+HS V TLE
Sbjct: 424 IKPATKQVEDLISEIQATVAKGLRVLVTTLTKKMAEDLTAYLQELKYKTSYLHSNVHTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI++DLR G  D+LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEILQDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VILYAD +TKSI  A+ ET RRR+ Q E+N+KH I P+++   I  +     LE 
Sbjct: 544 NSEGRVILYADKMTKSIDKALSETLRRRQIQQEYNEKHGIIPKTINRAIHALAT---LER 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +   +  A  L  +  K KA++  L K+M  AA NL FE+AA++RD++K L+++
Sbjct: 601 VDSKCDTKQAHTLFDNTAKLKANINKLNKEMLKAASNLEFEQAAKLRDQLKTLEAA 656


>gi|114777054|ref|ZP_01452074.1| excinuclease ABC subunit B [Mariprofundus ferrooxydans PV-1]
 gi|114552575|gb|EAU55035.1| excinuclease ABC subunit B [Mariprofundus ferrooxydans PV-1]
          Length = 659

 Score =  803 bits (2074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/654 (58%), Positives = 493/654 (75%), Gaps = 2/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++  D+ P GDQP AIA+L+KG+    + Q LLGVTGSGKT+TMA VIE  Q+P ++MA
Sbjct: 3   FKLAGDFTPRGDQPQAIAELVKGVGEGARHQTLLGVTGSGKTYTMACVIERTQKPTLIMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP++DTYIEK+S+INEQIDRMRH
Sbjct: 63  PNKTLAAQLYGEFKQFFPDNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINEQIDRMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATR+LLER D I+VSSVSCIYG+GS E+Y++M++ +++G   +Q+  ++ LV+ QY+R 
Sbjct: 123 AATRALLEREDVIIVSSVSCIYGLGSPEAYAEMLLYVEVGRETDQRAAVNKLVELQYQRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFR+ GD +E+FP+H ED A R+  FG+D++ IS F PLTG++I ++    I+
Sbjct: 183 DMDFHRGTFRLRGDVLEVFPAHAEDFAVRIEFFGDDVDAISRFDPLTGRRIESLHKYTIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VTPR  L  AM+ I+ EL  RL EL    +L+EAQRLEQR  +DLEM++  G C 
Sbjct: 243 PKSHFVTPREHLLRAMEAIRNELAERLAELHDNNKLVEAQRLEQRTVFDLEMIQEVGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+LTGR PGE PPTL +Y+P ++L+ +DESHVT+PQI GM++GD  RK TL ++
Sbjct: 303 GVENYSRHLTGRQPGEAPPTLLDYLPNNALVMLDESHVTVPQIGGMFKGDRSRKTTLVDF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  + P  I VSATPG +E+EQC G+IVEQ+IRPTGLVDP VE
Sbjct: 363 GFRLPSALDNRPLQFPEFEAIVPQAIYVSATPGPYEMEQCGGVIVEQVIRPTGLVDPEVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D         + G R+L T LTKRMAEDLTEYL    +RVRY+HS++ T+E
Sbjct: 423 VRPAGTQVDDFVSAATPVIETGFRVLATCLTKRMAEDLTEYLNNLGMRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLD+PE  LVAI DADKEGFLRS+ SL QTIGRAAR
Sbjct: 483 RMEILRDLRLGVFDVLVGINLLREGLDLPEVALVAIFDADKEGFLRSERSLTQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  +VILYAD IT S+Q A+DET RRR +QL +N +H I PQ+VK +I +++  +   D
Sbjct: 543 NIEGRVILYADKITNSMQRAMDETRRRRVRQLAYNAEHGITPQTVKSEIKDILGSVYEMD 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A  +I   A+   ++  + +  +  L + M  AA +L FE+AAR RDE  +LK
Sbjct: 603 YA--HIPEVAEPEPMTSAQKQQRMSELERLMAEAAADLRFEDAARYRDERIQLK 654


>gi|15604076|ref|NP_220591.1| excinuclease ABC subunit B [Rickettsia prowazekii str. Madrid E]
 gi|6226296|sp|Q9ZDW2|UVRB_RICPR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|3860767|emb|CAA14668.1| EXCINUCLEASE ABC SUBUNIT B (uvrB) [Rickettsia prowazekii]
 gi|292571799|gb|ADE29714.1| Excinuclease ABC subunit B [Rickettsia prowazekii Rp22]
          Length = 662

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/661 (58%), Positives = 494/661 (74%), Gaps = 12/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AI +++ G++S+++ Q+LLG+TGSGKTFTMA +IE   RP ++MA
Sbjct: 4   FSIISGYKPAGDQPKAIDEIITGLNSKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQ+Y E K+ FP NAVEYFVSYYDYYQPE+Y+ RTDT+IEK+SSINEQID MRH
Sbjct: 64  HNKTLAAQIYLEMKSIFPKNAVEYFVSYYDYYQPESYIVRTDTFIEKDSSINEQIDLMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D IV+SSVSCIYG+G+ + Y QM V L+ G +  + +LL+ L+  QYKR 
Sbjct: 124 SATRSLLERRDVIVISSVSCIYGLGAPDLYYQMTVHLEPGQNYPRDKLLNDLINLQYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DIG  RG FRV GD+++IFPSH  D AWR+S FG+++E I EF PLTG+K+  ++   I+
Sbjct: 184 DIGFERGCFRVKGDNMDIFPSHYSDKAWRLSFFGDELEYIHEFDPLTGEKLTQLDKAMIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSH+V PR  +N A+  I+ EL+ RL  L+ + +L+EA+RL QR  YDLEML  TGSC+
Sbjct: 244 GNSHFVMPRERINHAISSIEVELQKRLEFLKSQDKLIEAKRLNQRTLYDLEMLTETGSCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TGRN G+PPPTLFEY+PED+LLF+DESHV++PQI  MY  D  RK  L E+
Sbjct: 304 GIENYSRFFTGRNAGQPPPTLFEYLPEDALLFIDESHVSVPQIRAMYNSDRARKEVLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW   RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP   
Sbjct: 364 GFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGQFELEETGGTVVELIIRPTGLLDPECI 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+ A  QVED+  EI      GLRIL+T LTK+MAEDLT YL +   +  Y+HS + TLE
Sbjct: 424 IKPATNQVEDLISEIQTTINTGLRILVTTLTKKMAEDLTSYLQDLQYKTYYLHSNIHTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+R+LR G  D+LVGINLLREG+DIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 484 RIEILRNLRQGTIDILVGINLLREGIDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI--MEVIDPILL 738
           N   KVILYAD +TKSI  A+ ET RRR+ Q E+NKKH I P+++   I  +E ++ I  
Sbjct: 544 NSRGKVILYADKMTKSIDKAVSETLRRRQIQQEYNKKHGIIPKTINRAIHALESLEEI-- 601

Query: 739 EDAATTNISIDAQQ---LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                 +  +D +Q   L  +  K KAH+  L+K+M  AA NL FE+AA++R+++K L+ 
Sbjct: 602 -----HDNKLDKKQANALLNNPAKLKAHMDKLKKEMFKAASNLEFEQAAKLRNQLKALEE 656

Query: 796 S 796
           +
Sbjct: 657 A 657


>gi|51473402|ref|YP_067159.1| excinuclease ABC subunit B [Rickettsia typhi str. Wilmington]
 gi|81826331|sp|Q68XG5|UVRB_RICTY RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|51459714|gb|AAU03677.1| excinuclease ABC subunit B [Rickettsia typhi str. Wilmington]
          Length = 662

 Score =  795 bits (2054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/662 (58%), Positives = 492/662 (74%), Gaps = 14/662 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+G QP AI +++ G++S+++ Q+LLG+TGSGKTFTMA +IE   RP ++MA
Sbjct: 4   FSIISAYKPAGGQPKAIDEIIAGLNSKKRSQMLLGITGSGKTFTMANIIERTNRPTLIMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQ+Y E K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID MRH
Sbjct: 64  HNKTLAAQIYLEMKSIFPKNAVEYFVSYYDYYQPEAYIVRTDTFIEKDSSINEQIDLMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D IV++SVSCIYG+G+ + Y QM V L++G S  + +LL+ L+  QYKR 
Sbjct: 124 SATRSLLERRDVIVIASVSCIYGLGAPDLYYQMTVHLELGQSYPRDKLLNDLINLQYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DIG  RG FRV GD I+IFPSH  D AWR+S FGN++E I EF PLTG+K+  ++   ++
Sbjct: 184 DIGFERGCFRVKGDHIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLTQLDKAMVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSH+V P+ T+N A+  I+ EL+  L  L+ + +L+EA+RL QR  YDLEML  TGSC+
Sbjct: 244 GNSHFVMPQKTINNAISSIEVELQKHLDVLKSQDKLIEAKRLNQRTQYDLEMLTETGSCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TGRN GEPPPTLFEY+P+D+LLF+DESHV+IPQI  MY  D  RK  L E+
Sbjct: 304 GIENYSRFFTGRNAGEPPPTLFEYLPKDALLFLDESHVSIPQIRAMYNSDRARKEVLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW   RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP   
Sbjct: 364 GFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDPECI 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+ A  QVED+  EI     +GLRIL+T LTK+MAEDLT YL +   +  Y+HS + TLE
Sbjct: 424 IKPATNQVEDLISEIQTTITKGLRILVTTLTKKMAEDLTSYLQDLQYKTYYLHSNIHTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLR G  D+LVGINLLREG+DIPECGLVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEILRDLRQGNIDILVGINLLREGIDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK------EKIMEVID 734
           N   KVILYAD +TKSI  A+ ET RRR+ Q E+NKK+ I P+++       E + E+ D
Sbjct: 544 NSRGKVILYADKMTKSIDKAVSETLRRRQIQQEYNKKYGIIPKTINSAIHTLESLEEIHD 603

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L  D   TN  ++      +  K K+++  L+K+M  AA NL FE+AA++R+++K L+
Sbjct: 604 NKL--DKKQTNTLLN------NPAKLKSYMDKLKKEMFKAASNLEFEQAAKLRNQLKTLE 655

Query: 795 SS 796
            +
Sbjct: 656 KA 657


>gi|42523763|ref|NP_969143.1| excinuclease ABC subunit B [Bdellovibrio bacteriovorus HD100]
 gi|39575970|emb|CAE80136.1| excinuclease ABC subunit B [Bdellovibrio bacteriovorus HD100]
          Length = 745

 Score =  788 bits (2036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/659 (58%), Positives = 493/659 (74%), Gaps = 5/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +++ PSGDQP AI Q+ +  ++  K Q LLGVTGSGKTFTMA  I  + +PA+V+A
Sbjct: 63  FQLVSEFKPSGDQPKAIEQIAENFNAGLKHQTLLGVTGSGKTFTMAHTIANLNQPALVLA 122

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+EFK  FPHNAVEYFVSYYDYYQPEAY+P TDTYIEK+S+INEQIDRMRH
Sbjct: 123 PNKTLAAQLYAEFKELFPHNAVEYFVSYYDYYQPEAYIPSTDTYIEKDSAINEQIDRMRH 182

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL +R D I+VSSVSCIYG+GS E+Y  M++Q+    S+++  LL  L++ QY+R 
Sbjct: 183 SATRSLFDRRDVIIVSSVSCIYGLGSPEAYEGMMIQIVSNTSMKRDHLLRELIRIQYQRN 242

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGT RV GD++EIFP + E+ A RV  FG+ IE +S   PLTGQ +  ++ I IY
Sbjct: 243 NVDFSRGTVRVRGDNVEIFPPYEEERAVRVEFFGDYIERLSWIDPLTGQILEELDQIGIY 302

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT   +L  A+K I++EL+ RL++L +E +LLEAQRLEQR  YD+EM+E  G CQ
Sbjct: 303 PGSHHVTSDDSLKRAIKTIQDELRDRLVQLNQEMKLLEAQRLEQRTYYDIEMMEQMGFCQ 362

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++TGR PGEPPPTL EY P+D + F+DESHVT+PQI GMYRGD  RK  L E+
Sbjct: 363 GIENYSRHMTGRGPGEPPPTLLEYFPKDFVTFIDESHVTVPQIGGMYRGDRARKMNLVEH 422

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+  +    + VSATPG++EL++ +G+IVEQIIRPTGL+DP VE
Sbjct: 423 GFRLPSALDNRPLNFQEFEAMMDKVVYVSATPGTYELQKSEGVIVEQIIRPTGLIDPIVE 482

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + QV+D+  EI +   +  R+L+T LTKR AEDLTEY     I+V+Y+HSE+ T+E
Sbjct: 483 VRPVKHQVDDLLKEIRIRVSKQERVLITTLTKRSAEDLTEYYENLGIKVKYLHSEIDTME 542

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLDIPE  LV I DADKEGFLRS+ SL+QTIGRAAR
Sbjct: 543 RMEILRDLRLGVFDVLVGINLLREGLDIPEVSLVGITDADKEGFLRSERSLVQTIGRAAR 602

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM----EVIDPI 736
           N+N +VILY DT+T+S++ AI+ET RRR  Q E+N+ H I PQSVK++I     E+ D  
Sbjct: 603 NLNGRVILYGDTVTESMEKAINETERRRRIQSEYNEAHGITPQSVKKRIRDGLGEMFDGT 662

Query: 737 LLEDAATTNISID-AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +       N S    Q+ +   +K +  +  LR +M   + NL FEEAA+IRDEIKRL+
Sbjct: 663 VSTPLGGENKSAAIMQKFAQQPEKIQQEITKLRARMKELSANLEFEEAAKIRDEIKRLQ 721


>gi|291286762|ref|YP_003503578.1| excinuclease ABC, B subunit [Denitrovibrio acetiphilus DSM 12809]
 gi|290883922|gb|ADD67622.1| excinuclease ABC, B subunit [Denitrovibrio acetiphilus DSM 12809]
          Length = 658

 Score =  788 bits (2035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/648 (57%), Positives = 496/648 (76%), Gaps = 2/648 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QL+    S E  Q+LLGVTGSGKT+TMA V++ +  P +V+A
Sbjct: 3   FELVSDYQPAGDQPEAIRQLVANYQSGENAQVLLGVTGSGKTYTMANVVQQLNVPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAY P+TDT+IEK+SSINE ID++RH
Sbjct: 63  HNKTLAAQLYGEFKKFFPNNAVEYFVSYYDYYQPEAYKPQTDTFIEKDSSINEDIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D ++V+SVSCIYG+GS E+Y  M+V L++ + VE + +L  LV+ QY+R 
Sbjct: 123 SATRSLLERRDVLIVASVSCIYGLGSPEAYHGMLVHLEVNEDVEMETVLKKLVEIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RGT+RV GD++E+FP+H +D+A+R+  +G++++ ISEF PLTG+ I+    + IY
Sbjct: 183 EYDFHRGTYRVKGDTLEVFPAHEDDLAYRIEFYGDEVDRISEFDPLTGKTIKERPKVAIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            N+HYVT   T+  A+  IK EL  R  E E + +LLEAQRL QR  +D+EM+  TG C 
Sbjct: 243 PNTHYVTTSTTIEDAVSIIKRELAQRCTEFENQNKLLEAQRLTQRTMFDIEMMLETGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR L  R PG+ PPTL  Y+P+D+L+ VDESH+TIPQI GMY GD  RK TL EY
Sbjct: 303 GVENYSRILENRQPGDTPPTLLSYLPKDALVIVDESHMTIPQIKGMYNGDRSRKTTLVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL+FEE+       + VSATP  +EL++  G++ EQIIRPTGL+DPP+E
Sbjct: 363 GFRLPAALDNRPLKFEEFRERVNRIMYVSATPDDFELKESMGLLAEQIIRPTGLMDPPIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +R QV+D+Y+EI   A++G R+L+T LTKRM+E+LT+Y  +  +R++Y+HSE+ TLE
Sbjct: 423 VRPSRNQVDDLYNEIRKTAEKGERVLVTTLTKRMSEELTKYYDDMGVRIKYLHSEIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI I++ LRLG+FDVLVGINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RIRILKQLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSEKSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN + I YA+ IT+S+Q A+DET RRREKQL +NK+H I PQ++K +I  +++ I  +D
Sbjct: 543 NVNGRAIFYAEKITRSMQSALDETKRRREKQLLYNKEHGITPQTIKNEISNILESIYEKD 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
             T +I+ D   ++LS ++ +A +++L+K M   A NL FE+AAR+RD
Sbjct: 603 YVTVDINDDI-GITLSGRR-EADIEALKKLMQEHAQNLEFEKAARVRD 648


>gi|291279064|ref|YP_003495899.1| excinuclease ABC subunit B [Deferribacter desulfuricans SSM1]
 gi|290753766|dbj|BAI80143.1| excinuclease ABC, B subunit [Deferribacter desulfuricans SSM1]
          Length = 661

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/658 (57%), Positives = 494/658 (75%), Gaps = 5/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY   GDQP AI ++++        Q+LLGVTGSGKTFTMA VI+ +  P ++++
Sbjct: 3   FILKSDYKAEGDQPKAIKEIVENFKKGINKQVLLGVTGSGKTFTMANVIKELNVPTLIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+ EFKNFFP NAVEYFVSYYDYYQPEAY+P +D YIEK+SSINE IDRMRH
Sbjct: 63  HNKTLAAQLFGEFKNFFPDNAVEYFVSYYDYYQPEAYLPASDVYIEKDSSINEHIDRMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D ++V+SVSCIYG+GS E+Y   +V L++GD VE + +LS L++ QY+R 
Sbjct: 123 SATRSLLERRDVVIVASVSCIYGLGSPEAYYGKLVSLEVGDEVEIESVLSKLIEIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFR+ GD +E+FPSH + VA+R+  FG++++ ISEF P+TG+ IRN   I IY
Sbjct: 183 DYDFHRGTFRLKGDILEVFPSHEDSVAYRIEFFGDEVDAISEFDPVTGKTIRNRAKIAIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            N+HYVT    +  A+K IK +L  R+   E EG+L+EAQRL+QR+ +D+EML+ TG C+
Sbjct: 243 PNTHYVTANVPMEEAIKQIKMDLIKRVEYFESEGKLIEAQRLQQRVMHDIEMLKETGHCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY  GR  GE PPTL  Y+PED+L+ +DESH+TIPQI GMY GD  RK  L EY
Sbjct: 303 GIENYSRYFEGRESGETPPTLLNYLPEDALIIIDESHITIPQIKGMYHGDRSRKMNLVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL FEE+       + VSATPG +E+    G+I+EQI+RPTGL+DP +E
Sbjct: 363 GFRLPAALDNRPLTFEEFYEKAKRILYVSATPGDFEINDSDGVIIEQIVRPTGLIDPKIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A+TQV+D+Y EI    ++  R+++T LTKRMAEDLT Y  E  IRV Y+HSE+ TLE
Sbjct: 423 VRPAKTQVDDLYKEILNTTKRNERVMVTTLTKRMAEDLTSYYKELGIRVEYLHSEIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI+IIRDLRLGKFDVLVGINLLREGLDIPE  L+AILDADKEGFLRS  +LIQT+GRAAR
Sbjct: 483 RIKIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSDKALIQTVGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN + I YAD +T S++ AI+ET RRR+ Q E+NKKHNI P+++K KI  +++ I  +D
Sbjct: 543 NVNGRAIFYADKMTDSMKRAIEETERRRKIQEEYNKKHNITPETIKSKINNILETIYEKD 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD---EIKRLKS 795
             T +I  D   L+L+  + K  ++++ K M+ AA++ +FE+AA++RD   E K +KS
Sbjct: 603 YYTVDID-DELGLNLTGNR-KKDIETIEKAMYKAAEDYDFEKAAKLRDLLFEYKGVKS 658


>gi|289208421|ref|YP_003460487.1| excinuclease ABC subunit B [Thioalkalivibrio sp. K90mix]
 gi|288944052|gb|ADC71751.1| excinuclease ABC, B subunit [Thioalkalivibrio sp. K90mix]
          Length = 677

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/660 (57%), Positives = 492/660 (74%), Gaps = 6/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI  L  GI +    Q+LLGVTGSGKTFT+A V+E +QRP I++A
Sbjct: 9   FKVVSQYQPAGDQPAAIRALTDGIEAGLAHQVLLGVTGSGKTFTIANVVENLQRPTIILA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN+ I++MR 
Sbjct: 69  PNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQMRL 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G    Y  M++ L+ GD ++Q++LL  L + QY R 
Sbjct: 129 SATRALLERRDAIIVASVSAIYGLGDPRKYLSMVLHLQRGDRIDQRDLLRRLAELQYTRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + R T+RV G+ I+I P+  E  A R+ +F ++IE +S F PLTG+++R V  + IY
Sbjct: 189 DTELRRATYRVRGEVIDIHPAESEIEAVRIELFDDEIERLSYFDPLTGEQLRTVPRLTIY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR TL  A+  I++ELK RL  L KE RL+EAQRLEQR  +DLEM+   G C 
Sbjct: 249 PKTHYVTPRETLLGAVDQIRDELKERLDFLRKEDRLVEAQRLEQRTLFDLEMILEIGYCN 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPT F+Y+P+D+LL VDESHV++PQ+ GMY+GD  RK TL EY
Sbjct: 309 GIENYSRYLSGRAPGEPPPTFFDYLPKDALLVVDESHVSVPQVGGMYKGDRSRKETLVEY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L+P TI VSATPG +E E   G IV+Q++RPTGL+DP +E
Sbjct: 369 GFRLPSALDNRPLRFEEFEALQPQTIYVSATPGPYEREHA-GAIVDQVVRPTGLLDPILE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A +QV+D   E+    ++  R+L+T LTKRMAEDLT+YL E  +RVRY+HS++ T+E
Sbjct: 428 VRPAGSQVDDCLSEVRDRVERDERVLITTLTKRMAEDLTDYLSEHGVRVRYLHSDIDTVE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAI DADKEGFLRS  SLIQTIGRAAR
Sbjct: 488 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSDRSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-----P 735
           NVN K ILYAD +T S+Q AIDET RRREKQ+ HN+ H I PQ +++ + ++++     P
Sbjct: 548 NVNGKAILYADKVTGSMQRAIDETERRREKQIAHNEAHGITPQGIRKNVADILEARNATP 607

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                     ++ +A     + ++    ++ L ++M   A +L FEEAARIRD I++LK+
Sbjct: 608 GSGRRRGQKKVAEEAPDYIDAPEQAAKEIEKLEQEMFQKARDLEFEEAARIRDRIEKLKA 667


>gi|192360924|ref|YP_001982886.1| excinuclease ABC subunit B [Cellvibrio japonicus Ueda107]
 gi|190687089|gb|ACE84767.1| excinuclease ABC, B subunit [Cellvibrio japonicus Ueda107]
          Length = 675

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/665 (56%), Positives = 500/665 (75%), Gaps = 14/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +++ P+GDQP+AIA L+ GI +    Q LLGVTGSGKTFT+A VI  +QRP ++MA
Sbjct: 10  FVVHSEFAPAGDQPSAIAGLVAGIEAGLAHQTLLGVTGSGKTFTIANVIARVQRPTLIMA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+SS+NE I++MR 
Sbjct: 70  HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSVNEHIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D I+V++VS IYG+G  +SY +M++ +  GD ++Q+++L  L + QY R 
Sbjct: 130 SATKALMERKDAIIVATVSAIYGLGDPDSYMKMLLHIVRGDRIDQRQILRRLAELQYTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R T+RV G+ I+I+P+  +  A RV +F +++E+IS F PLTG+ +  V    IY
Sbjct: 190 DMDFSRATYRVRGEVIDIYPADSDMEAVRVELFDDEVEQISVFDPLTGEVLHKVPRYTIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR T+  A+  IKEEL+ RL  L +  +L+EAQRLEQR  YDLEM+   G C 
Sbjct: 250 PKTHYVTPRETVLEAIDNIKEELRERLAYLRENNKLVEAQRLEQRTRYDLEMMHELGYCN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GEPPPTLF+Y+P D+LL +DESHVT+PQI  MY+GD  RK TL EY
Sbjct: 310 GIENYSRFLSGRTSGEPPPTLFDYLPADALLVIDESHVTVPQIGAMYKGDRSRKETLVEY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P  I VSATPG +E ++ QG +VEQ++RPTGLVDP +E
Sbjct: 370 GFRLPSALDNRPMRFDEWERIAPQMIFVSATPGKYE-DEHQGQVVEQVVRPTGLVDPQIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+DV  EI L A++  R+L+T LTKRMAEDLTEYL E  +RVRY+HS++ T+E
Sbjct: 429 VRPAGTQVDDVLSEIRLRAEKNERVLVTTLTKRMAEDLTEYLAEHGVRVRYLHSDIDTVE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 489 RVEIIRDLRLGQFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILYAD +T S++ AIDET RRR+KQ++HN+K  I PQ ++++I ++++   +  
Sbjct: 549 NVNGKAILYADNMTGSMKRAIDETERRRQKQIDHNRKQGITPQGIRKQIADILEGAQVPG 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS-----------LRKQMHLAADNLNFEEAARIRDE 789
           A     S   + +++++K+GK  ++            L KQM  AA +L FE AA++RDE
Sbjct: 609 AGGR--SARNKAMAIAEKQGKYKVEVNPKDIWKTIELLEKQMFQAAKDLEFEVAAKLRDE 666

Query: 790 IKRLK 794
           I++LK
Sbjct: 667 IEKLK 671


>gi|254282159|ref|ZP_04957127.1| excinuclease ABC, B subunit [gamma proteobacterium NOR51-B]
 gi|219678362|gb|EED34711.1| excinuclease ABC, B subunit [gamma proteobacterium NOR51-B]
          Length = 673

 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/668 (56%), Positives = 500/668 (74%), Gaps = 11/668 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++++Y P+GDQP AI +L+ GI+S    Q+LLGVTGSGKTFTMA V++ +QRP IVMA
Sbjct: 5   FEVKSNYQPAGDQPFAIQKLVDGINSGLAEQVLLGVTGSGKTFTMANVVQQLQRPTIVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++ +N+ I++MR 
Sbjct: 65  HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAQVNDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER DC+VVS+VS IYG+G  ESY +M++ L  G+ ++Q+ +L  L + QY R 
Sbjct: 125 SATKALIEREDCLVVSTVSSIYGLGDPESYFKMVMHLSRGEIIDQRGILRQLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGT+RV GD I++FP+  +++A R+ +F  +IE ++ F PLTG  +  +  I I+
Sbjct: 185 DIDFKRGTYRVRGDVIDVFPADSDELAIRIELFDEEIENLTTFDPLTGVIVEKLPRITIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV  R T+  A+  I+EEL+ R+ +L++  +LLEAQR++QR  YD+EM+   G CQ
Sbjct: 245 PKTHYVASRDTMLGAIDLIEEELEGRVKQLKEADKLLEAQRIQQRTRYDIEMIRELGYCQ 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLFEY+P+++L+ VDESHVT+PQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRAPGEPPPTLFEYLPDNALIMVDESHVTVPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW  LRP  I VSATPG++E E+  G  VEQ++RPTGLVDP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEALRPQAIYVSATPGAYETERS-GQTVEQVVRPTGLVDPEVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R ARTQV+D+  EI+     G R+L+T LTKRMAEDLTEYL E +IRVRY+HS++ T+E
Sbjct: 424 VRPARTQVDDLLGEIHTTVAAGSRVLVTTLTKRMAEDLTEYLSEHDIRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII+DLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 484 RVEIIQDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           +++ + ILY D +T S++ AI ET RRR KQ+E N +H I P+ +++ + ++++      
Sbjct: 544 HIDGRAILYGDRMTGSMERAIAETERRRVKQVEFNTEHGITPKGIEKSVQDILEGARRMP 603

Query: 735 --PILLED--AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
             P    D   A    +  A+ ++LS K     L+S+  QM   A NL FE+AA++RD++
Sbjct: 604 TKPRSARDRKVAEERAAYTAEVVNLSPKALARKLESMEAQMLEHAKNLEFEQAAQLRDQL 663

Query: 791 KRLKSSPY 798
             +K   +
Sbjct: 664 TEIKQQAF 671


>gi|220934929|ref|YP_002513828.1| excinuclease ABC subunit B [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996239|gb|ACL72841.1| excinuclease ABC subunit B [Thioalkalivibrio sp. HL-EbGR7]
          Length = 674

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/661 (57%), Positives = 491/661 (74%), Gaps = 6/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++T Y P+GDQPAAI +L++G+      Q+LLGVTGSGKTFT+A VI+  QRP I++A
Sbjct: 5   FTLKTGYTPAGDQPAAIEKLVEGLEDGLAHQVLLGVTGSGKTFTIANVIQRTQRPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G V +Y QM++ LK GD V+Q+++L  L + QY R 
Sbjct: 125 SATRALLERRDAIIVASVSAIYGLGDVNAYMQMVLHLKRGDRVDQRDILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RGT+RV G+ I+I P+  E  A R+ +F ++IE++S F PLTG+ ++ V  + +Y
Sbjct: 185 DMELRRGTYRVRGEVIDIHPAESEREAVRIELFDDEIEQLSYFDPLTGEILKRVARLTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR T+  A++ IK EL+ RL +L    +L+EAQRLEQR  +D+EM+   G C 
Sbjct: 245 PKTHYVTPRETILGAVEQIKVELRERLEQLRSVEKLVEAQRLEQRTIFDIEMMLEVGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPP  F+Y+P+D+LL VDESHVT+PQ+ GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRKPGEPPPCFFDYLPKDALLVVDESHVTVPQLGGMYRGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P  I VSATPG +ELE   G +VEQ++RPTGLVDP VE
Sbjct: 365 GFRLPSALDNRPLRFEEFEALSPQAIYVSATPGPYELEHA-GQVVEQVVRPTGLVDPEVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DV  EI        R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ T+E
Sbjct: 424 VRPATHQVDDVLSEIRARVAVNQRVLITTLTKRMAEDLTEYLHEHDVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 484 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ K ILYAD IT S+  A++ET RRREKQ+ HN +H I P+SV+++I ++++      
Sbjct: 544 NVHGKAILYADRITGSMARAMEETERRREKQIAHNLEHGITPRSVEKRIADIMEGAYAGG 603

Query: 741 AATT-----NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +  +      ++ +     L  +K    +  L  QM+  A NL FEEAA +RD I+ L+ 
Sbjct: 604 SMASPKRFAKVAEEEIAYGLPPEKAVKEIARLESQMYEHARNLEFEEAALLRDRIEHLRK 663

Query: 796 S 796
            
Sbjct: 664 G 664


>gi|92113956|ref|YP_573884.1| excinuclease ABC subunit B [Chromohalobacter salexigens DSM 3043]
 gi|91797046|gb|ABE59185.1| Excinuclease ABC subunit B [Chromohalobacter salexigens DSM 3043]
          Length = 676

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/672 (57%), Positives = 487/672 (72%), Gaps = 23/672 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+ Y P+GDQPAAI  L+KG ++    Q LLGVTGSGKTFTMA V+E +QRP IVMA
Sbjct: 5   FRIQSQYRPAGDQPAAIDGLIKGFNAGLAHQTLLGVTGSGKTFTMANVVERLQRPTIVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V SVS IYG+G  + Y +M +    G+ ++Q+  L  L + QY R 
Sbjct: 125 SATKALLERRDALIVVSVSAIYGLGDPDQYLKMRLHFNRGELIDQRTFLRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGT+RV GD I+IFP+  ED A RV +F ++IE IS F PLTG+    V  + IY
Sbjct: 185 DMDFRRGTYRVRGDVIDIFPADAEDEAVRVELFDDEIETISLFDPLTGEVRDKVPRMTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR T+  A++ IK EL  RL  + +  +L+EAQRLEQR  YD+EM+   G C 
Sbjct: 245 PKSHYVTPRETILAAVEDIKVELADRLAWMRQHDKLVEAQRLEQRTLYDIEMMLELGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGE PPT F+Y+P+D+LLF+DESHV++PQ+ GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGREPGEAPPTFFDYLPDDTLLFIDESHVSVPQVGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEEW  + P T  VSATPG +E E   G +VEQ++RPTGLVDP +E
Sbjct: 365 GFRLPSALDNRPMKFEEWERICPQTAFVSATPGPYEAEHA-GQVVEQVVRPTGLVDPEIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A+TQV+D+  EI L    G R+L+T LTKRMAEDLTEYL E +IRVRY+HS++ T+E
Sbjct: 424 VRPAQTQVDDLLSEIKLRTDVGERVLVTTLTKRMAEDLTEYLDEHDIRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + K ILY D +T S+Q AIDET RRR KQ+  N++H I P +V + + ++     +E 
Sbjct: 544 NAHGKAILYGDRVTNSMQRAIDETERRRNKQIAFNEEHGITPTTVTKSVADI-----MEG 598

Query: 741 AATTNISI----------------DAQQLSLSKKKG-KAHLKSLRKQMHLAADNLNFEEA 783
           A T    +                 ++QL+     G    +  L   MH AA NL FEEA
Sbjct: 599 AQTPGKKVGRKRPDKRVAEAPGDYSSEQLNQMDAAGLTREIGKLEDAMHEAAQNLEFEEA 658

Query: 784 ARIRDEIKRLKS 795
           AR+RD+++ LK+
Sbjct: 659 ARLRDQLQSLKA 670


>gi|313672630|ref|YP_004050741.1| excinuclease abc subunit b [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939386|gb|ADR18578.1| Excinuclease ABC subunit B [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 655

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/656 (55%), Positives = 496/656 (75%), Gaps = 5/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI Q+++   S    Q+LLGVTGSGKTFTMA VI+ +  P +++A
Sbjct: 3   FKLVSNYTPQGDQPEAIRQIVENFRSGIDRQVLLGVTGSGKTFTMANVIQELNVPTLIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SSIN+ ID+MRH
Sbjct: 63  HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSINDDIDKMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D I+++SVSCIYG+GS E+Y  M+V +++G+     E+L+ LV+ +Y+R 
Sbjct: 123 SATRSLLERRDVIIIASVSCIYGLGSPEAYYGMLVSVEVGEERVIDEILAKLVEIKYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I   RGTFRV GD IE+FPSH  D+A+R+  FG++I+ ISEF P+TG+ +     + IY
Sbjct: 183 EIDFHRGTFRVKGDVIEVFPSHESDLAYRIEFFGDEIDRISEFDPITGKTLYTRNKVAIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            N+HYVT + T+  A+K I+ +LK  +++ E++ +LLEAQRL+QR+ +DLEM++ TG C 
Sbjct: 243 PNTHYVTTKVTIEQAIKEIERDLKNSVVKFEQQQKLLEAQRLQQRVMFDLEMIKETGYCT 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY  GR PG PPPTL  Y+P+D+L+ +DESH+T+PQI GMY GD  RK TL EY
Sbjct: 303 GIENYSRYFDGRLPGTPPPTLMSYLPKDALVIIDESHITVPQIRGMYNGDRSRKMTLVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL+FEE+N +    + VSATP  +ELE  +G++VEQIIRPTGL+DP VE
Sbjct: 363 GFRLPAALDNRPLKFEEFNQIAKKILYVSATPSEYELEDSKGVVVEQIIRPTGLMDPEVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A+ QV+D+  E      +G R+L+T LTKRMAEDLT Y+ +    V Y+HS++ TL+
Sbjct: 423 IRPAKNQVDDLIGEAYKVISRGERVLVTTLTKRMAEDLTRYMKDLGFSVEYLHSDIDTLD 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGK D+L+GINLLREGLD+PE  LVA+L+ADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVKILRDLRLGKIDILIGINLLREGLDLPEVSLVAVLNADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K I YAD IT+SI+ A++ET RRR+KQL++N++H I P+++K +I  +++ I  +D
Sbjct: 543 NVNGKAIFYADRITESIKKAVEETARRRKKQLQYNQEHGITPETIKSEIKNILESIYEKD 602

Query: 741 AATTNISIDAQQLSL-SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                   D ++  + S    +  +  L K+M+ AA++LNFE+AARIRD I   K+
Sbjct: 603 Y----FEYDIEEFGIKSDGNIEKQIAELEKEMYKAAESLNFEKAARIRDIILEYKA 654


>gi|94499201|ref|ZP_01305739.1| excinuclease ABC subunit B [Oceanobacter sp. RED65]
 gi|94428833|gb|EAT13805.1| excinuclease ABC subunit B [Oceanobacter sp. RED65]
          Length = 676

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/665 (56%), Positives = 484/665 (72%), Gaps = 12/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y P+GDQP AI QL+ G+ S    Q LLGVTGSGKTFTMA VI   QRP IV+A
Sbjct: 6   FEVKSKYQPAGDQPKAIEQLMDGLESGLARQTLLGVTGSGKTFTMANVIAKAQRPTIVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 66  HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER DCI+V++VS IYG+G   SY +M++ L  GD ++Q+ +L  L + QY R 
Sbjct: 126 SATKALMERRDCIIVATVSSIYGLGDPSSYLKMVLHLDRGDIIDQRGVLRRLAELQYTRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R T+RV GD I+IFP+  ED A RV +F  +IEE+S F PLTG+ +R V  I I+
Sbjct: 186 DMDFHRATYRVRGDVIDIFPAESEDEAVRVELFDEEIEELSIFDPLTGEILRKVPRITIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL   +  +K ELK RL +L+   +L+EAQRLEQR  YDLEM++  G C 
Sbjct: 246 PKSHYVTPRETLVDMIDEVKAELKERLTQLKDNNKLVEAQRLEQRTQYDLEMIQQLGYCT 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G  PPTLF+Y+P+D+L+F+DESHVTIPQ   MY+GD  RK TL E+
Sbjct: 306 GIENYSRYLSGRPQGAAPPTLFDYLPDDALMFIDESHVTIPQFGAMYKGDRSRKETLVEF 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++F+EW  + P TI VSATPG +E E  Q  +VEQ++RPTGLVDP VE
Sbjct: 366 GFRLPSALDNRPMKFDEWEAISPQTIFVSATPGKYEAE-YQDAVVEQVVRPTGLVDPIVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D   EI    ++G RIL+TV+TKRMAEDLT++L+E ++RVRY+HS++ T+E
Sbjct: 425 VRPATTQVDDALGEIRNRVEKGERILITVMTKRMAEDLTDFLFEHDVRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAI DADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAIFDADKEGFLRSDRSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           NV  K ILYA+ IT S++ A++ET RRREKQ+  N++H I PQ +K+ + ++++  +   
Sbjct: 545 NVEGKAILYAERITDSMKRAMEETKRRREKQIAFNEEHGITPQGIKKSVEDILEGAVTPG 604

Query: 739 ---------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                    +  A       A    L+       +  +   M  AA +L FEEAAR+RDE
Sbjct: 605 KKIGHGRNRKKVAEKGAGYTADMEHLNVNDLNKRITQVEDAMFKAAKDLKFEEAARLRDE 664

Query: 790 IKRLK 794
           +  LK
Sbjct: 665 LHELK 669


>gi|297171124|gb|ADI22135.1| helicase subunit of the DNA excision repair complex [uncultured
           myxobacterium HF0200_19H16]
          Length = 668

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/654 (57%), Positives = 488/654 (74%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + + P GDQP AI +L+ G       Q LLGVTGSGKTFT+A VI+ +Q P +++A
Sbjct: 8   FQLTSLFEPQGDQPQAILELVNGYRQGNTNQTLLGVTGSGKTFTVANVIQKLQVPTLLIA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAYVP TDTYI+K+S+IN+ IDRMRH
Sbjct: 68  HNKTLAAQLYEEFKQLFPLNAVEYFVSYYDYYQPEAYVPSTDTYIDKDSTINDAIDRMRH 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLERND I+VSSVSCIYG+GS E+Y  M+V L++G  V++  +L  LV+ QY R 
Sbjct: 128 SATRTLLERNDVIIVSSVSCIYGLGSAEAYYDMLVFLQVGTIVDRDHILKKLVEIQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP H +  A R+  FG++I+ I    PL G+++  ++ + IY
Sbjct: 188 DIDFHRGTFRVRGDVLEIFPVHQDSQALRIEWFGDEIDSIKNIDPLRGKELAGLDKVAIY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV    +   A+  I+EEL+ RL  L    +L++AQRLEQR  +DLEM+E  G C 
Sbjct: 248 PATHYVVTPESKVRALDSIREELQKRLQTLRDTNQLVQAQRLEQRTLFDLEMIEEMGYCT 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PG PPPTL +Y P++ LL +DESH T+PQI  MYRGD  RK TL +Y
Sbjct: 308 GIENYSRHLTGRPPGHPPPTLMDYFPQNYLLVIDESHQTVPQIGAMYRGDRSRKTTLVDY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E++ LR  ++ +SATPG +ELEQCQG+IVEQ+IRPTGLVDPP+E
Sbjct: 368 GFRLPSALDNRPLRFDEFDKLREKSLYISATPGEYELEQCQGVIVEQVIRPTGLVDPPIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A +QV+D+ +EI +   +  R+L+T LTKRMAEDLTE+  + +I VRY+HS++ TL+
Sbjct: 428 VRPAISQVDDLLEEIRITIAKQQRVLVTTLTKRMAEDLTEFFADASIEVRYLHSDIDTLD 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIE++R LR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 488 RIELLRGLRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTVGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +VI+YAD ITKS+Q AI+ET RRREKQL+HNK+H I P+++++ I E+    L E 
Sbjct: 548 NVDGRVIMYADKITKSMQNAIEETDRRREKQLDHNKEHGIIPRTIQKPIPELNATALYER 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              T    D  + +++       +  +R +MH AA+ L FE AA++RD+IK L+
Sbjct: 608 DIDTMDQEDLAKKTINPALIPEKVTKMRAKMHEAAEALEFELAAQLRDQIKALE 661


>gi|325982186|ref|YP_004294588.1| UvrABC system protein B [Nitrosomonas sp. AL212]
 gi|325531705|gb|ADZ26426.1| UvrABC system protein B [Nitrosomonas sp. AL212]
          Length = 676

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/658 (56%), Positives = 498/658 (75%), Gaps = 4/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQPAAIAQL++GI+     Q LLGVTGSGKT+T+A +I    RPAI++A
Sbjct: 10  FKLHQAFAPAGDQPAAIAQLIEGINDGLAFQTLLGVTGSGKTYTIANMIAHSGRPAILIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E + FFP NA+EYFVSYYDYYQPEAYVP  D +IEK+SSINE I++MR 
Sbjct: 70  PNKTLAAQLYAEMREFFPENAIEYFVSYYDYYQPEAYVPARDLFIEKDSSINEHIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER+D I+V++VSCIYGIG    Y  MI+ L+ G+ + Q++++  L + QY+R 
Sbjct: 130 SATKSLLERDDAIIVATVSCIYGIGDPVDYHGMILHLRSGEKISQRDVIKRLTEMQYERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RG FRV GD ++IFP+   + A RVS+F ++++ +S F PLTG+ ++ +    +Y
Sbjct: 190 ELEFKRGVFRVRGDVVDIFPAENSEAAVRVSLFDDEVDNLSLFDPLTGRMLQKLSRFTVY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T   AM+ IK+EL+ RL    +E RL+EAQRLEQR  +DLEML   G C+
Sbjct: 250 PSSHYVTPRSTTLRAMETIKDELRERLEHYYQEHRLVEAQRLEQRTRFDLEMLNELGFCK 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G+NPGEPPPTL +Y+P ++L+ +DESHVT+PQI GMY+GD  RK  L  Y
Sbjct: 310 GIENYSRHLSGKNPGEPPPTLLDYLPPNALMIIDESHVTVPQIGGMYKGDRSRKENLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+    P T+ VSATP ++E  Q  G IVEQ++RPTGLVDP +E
Sbjct: 370 GFRLPSALDNRPLRFEEFEKRMPQTVFVSATPANYE-HQHSGQIVEQVVRPTGLVDPIIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  E++L   +  R+L+T LTKRMAEDLT+Y  +  I+VRY+HS++ T+E
Sbjct: 429 VRPVTTQVDDLMSEVHLRTAKNERVLVTTLTKRMAEDLTDYFSDHKIKVRYLHSDIDTVE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 489 RVEIIRDLRLGQFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++N   ILYA+TIT+S+++AIDET RRR+KQ++HN +H I P+SV ++I ++ID +   +
Sbjct: 549 HINGTAILYAETITRSMRVAIDETNRRRQKQIDHNVQHQIIPRSVHKRIKDLIDGVYNYE 608

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           ++  N+     Q    ++S+ +    ++ + K+M  AA NL FE+AAR RDE+K LK+
Sbjct: 609 SSQQNLKAAQTQARYDAMSESQLAKEIQRVEKKMFSAAKNLEFEQAARYRDELKSLKN 666


>gi|78486095|ref|YP_392020.1| excinuclease ABC subunit B [Thiomicrospira crunogena XCL-2]
 gi|123555134|sp|Q31ES7|UVRB_THICR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|78364381|gb|ABB42346.1| Excinuclease ABC subunit B [Thiomicrospira crunogena XCL-2]
          Length = 678

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/672 (55%), Positives = 496/672 (73%), Gaps = 22/672 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL++G+   E  Q LLGVTGSGKTFTMA VI  +QRP I++A
Sbjct: 5   FEIVSQYEPAGDQPVAITQLVEGLEDGEAFQTLLGVTGSGKTFTMANVIAKVQRPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K+FFPHNAVEYFVSYYDYYQPEAYVP +DTYI K+SS+NEQI+++R 
Sbjct: 65  HNKTLAAQLYGEMKSFFPHNAVEYFVSYYDYYQPEAYVPASDTYIAKDSSVNEQIEQLRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D +++++VS IYG+G  + Y +MI+QL++GD++ Q+++L  L   QY R 
Sbjct: 125 SATKALMERKDVVLIATVSAIYGLGDPDQYLKMILQLRLGDTISQRDILQQLTTMQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD I++FP+  E+ A R+ +F ++++ ++ F PLTG+ +     I +Y
Sbjct: 185 DVELWRGCFRVRGDVIDVFPAEAEEYAVRIELFDDEVDSLAWFDPLTGEVLTRPTRITVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  +   ++ +K EL  RL EL    +L+EAQRLE+R   D+EM+   G C 
Sbjct: 245 PKSHYVTPKERVLQTIEQVKVELVSRLEELRSLNKLVEAQRLEERTRLDIEMMSELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTL +Y+P+++L+F+DESHVTIPQI GMY+GD  RK  L  +
Sbjct: 305 GIENYSRYLSGRASGEPPPTLLDYLPKNALMFIDESHVTIPQIGGMYKGDRSRKENLVTF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRP+RF+E+  + P TI VSATPG +E E  +  IVEQ++RPTGL+DP +E
Sbjct: 365 GFRLPSAMDNRPMRFDEFEKIMPQTIFVSATPGKYEAEH-ESKIVEQVVRPTGLLDPVLE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI L  ++  R+L+T LTKRMAE+LTEYL E N+RVRY+HS++ T+E
Sbjct: 424 VRPALTQVDDLLGEIRLRVEKEERVLVTTLTKRMAENLTEYLEEHNVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  K ILYAD ITKS+Q AIDET RRR KQ++HN +  I PQ + +KI ++     LED
Sbjct: 544 NVAGKAILYADKITKSMQKAIDETERRRAKQIQHNTEQGITPQKLNKKITDI-----LED 598

Query: 741 ---------------AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
                          AA  +     Q++  ++  +  + +K + KQM+ AA +L+FE AA
Sbjct: 599 SPYAPKPGASAAKLKAAEADGEYSPQEMQRMTPAQLASEIKRMEKQMYQAAKDLDFELAA 658

Query: 785 RIRDEIKRLKSS 796
           ++RD++KRLKSS
Sbjct: 659 KLRDDLKRLKSS 670


>gi|121997343|ref|YP_001002130.1| excinuclease ABC subunit B [Halorhodospira halophila SL1]
 gi|121588748|gb|ABM61328.1| Excinuclease ABC subunit B [Halorhodospira halophila SL1]
          Length = 676

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/659 (56%), Positives = 491/659 (74%), Gaps = 6/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AI +L+ GI S    Q LLGVTGSGKTFT+A VIE +QRPAI++A
Sbjct: 5   FKLNARFQPAGDQPQAIDELVDGIESGLSDQTLLGVTGSGKTFTVANVIERLQRPAILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E + F P N VEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMREFLPENRVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LE  D ++V+SVS IYG+G  ++Y  M++ L  G+ ++Q+ +L  L + QY R 
Sbjct: 125 SATKAVLEHKDTVIVASVSSIYGLGDPQAYMSMLLHLVRGEQIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGT+R  G+ I+IFP+   + A RV +F ++IEEIS F PLTG+ +R V  + IY
Sbjct: 185 DTELTRGTYRARGEVIDIFPAESPEEAVRVQLFDDEIEEISWFDPLTGEVLRRVPRVTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTP+  ++ A++ IKEEL+ RL EL    +L+EAQRLE+R  +D+EM+   G C 
Sbjct: 245 PKTHYVTPKEQIHQAVEQIKEELRERLDELRAADKLVEAQRLEERTRFDMEMMLELGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+YIP +++LF+DESHVT+PQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYIPPEAVLFIDESHVTVPQIGGMYKGDRSRKQTLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P T+ VSATPG +E E+  G +VEQ++RPTGLVDP VE
Sbjct: 365 GFRLPSALDNRPLKFEEFRRLAPQTVYVSATPGPFE-EEHAGQVVEQVVRPTGLVDPEVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DVY EI   A++  R+L+T LTKRMAEDLTEYL E  +RVRY+HS+V T+E
Sbjct: 424 VRPATAQVDDVYGEIRARAERDERVLVTTLTKRMAEDLTEYLEENGVRVRYLHSDVDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 484 RTEIIRDLRLGHFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----PI 736
           N++ + ILYAD +T S++ AIDET RRR KQ+ HN+ H I PQ +++++ ++++    P 
Sbjct: 544 NIDGRAILYADQMTDSMRRAIDETERRRAKQIAHNEAHGITPQGIRKEVPDIMERGGVPA 603

Query: 737 LLEDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                    ++ +A + + LS  +    ++ L K+M   A  L FEEAAR+RDEI+R++
Sbjct: 604 PGAPQRAARVAEEAGEYAGLSPAEAVRRIRELEKRMQEHARELEFEEAARVRDEIRRIE 662


>gi|254481916|ref|ZP_05095159.1| excinuclease ABC, B subunit [marine gamma proteobacterium HTCC2148]
 gi|214038045|gb|EEB78709.1| excinuclease ABC, B subunit [marine gamma proteobacterium HTCC2148]
          Length = 671

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/666 (56%), Positives = 484/666 (72%), Gaps = 8/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ + P+GDQP AI QL++GI +    Q LLGVTGSGKTFTMA V+E MQRP I+MA
Sbjct: 5   FKVESSFQPAGDQPEAIRQLVEGIQAGLASQTLLGVTGSGKTFTMAHVVEQMQRPTIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER DC+VV++VS IYG+G   SY +M + L  G+ ++Q+E+L  L   QY R 
Sbjct: 125 SATKALMEREDCLVVATVSAIYGLGDPASYYKMRMHLSRGEIIDQREVLRHLADLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R  +RV GD I+IFP+  E  A R+ +F  +IE I  F PLTG     V  I I+
Sbjct: 185 DVDFGRANYRVRGDVIDIFPADSEREAVRIELFDKEIENIYTFDPLTGAVESKVPRITIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR T+  A++ I+ EL +RL +L+   +L+EAQRL QR  YD+EM+   G CQ
Sbjct: 245 PKSHYVTPRDTMLQAVEQIEAELAVRLDQLKDNQKLVEAQRLGQRTKYDMEMIRELGYCQ 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSRYL+GR  GEPPPTLFEY+P+++L+ +DESH TIPQI  MY+GD  RK TL EY
Sbjct: 305 GVENYSRYLSGRKAGEPPPTLFEYLPDNALVIIDESHATIPQIGAMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+EW  L P  I VSATPG++E +   G +VEQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFQEWEQLVPQAIFVSATPGAYEADHA-GRVVEQVVRPTGLIDPEIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A +QV+D+  EI L   +G R+L+T LTKRM+EDLTEYL +  +RVRY+HS++ T+E
Sbjct: 424 IRPATSQVDDLLGEIKLTVDRGERVLVTTLTKRMSEDLTEYLADHGVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           N+N + ILYAD +T S++ AI ET RRREKQLEHN++H I P+ V++ + ++++      
Sbjct: 544 NLNGRAILYADRMTGSMERAIAETARRREKQLEHNEEHGITPRGVEKSVKDIMEGARRMP 603

Query: 739 -----EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                +  A   ++  A+   LS       LK L  QM   A NL FEEAA +RD++   
Sbjct: 604 TKGKGKKVAEPKLAFGAEVARLSPAALSRKLKQLESQMQEHAKNLEFEEAAALRDQLTEF 663

Query: 794 KSSPYF 799
           K   + 
Sbjct: 664 KQVAFL 669


>gi|254491477|ref|ZP_05104656.1| excinuclease ABC, B subunit [Methylophaga thiooxidans DMS010]
 gi|224462955|gb|EEF79225.1| excinuclease ABC, B subunit [Methylophaga thiooxydans DMS010]
          Length = 668

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/657 (57%), Positives = 491/657 (74%), Gaps = 3/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +D+ P+GDQPAAI  L++G+ + E  Q LLGVTGSGKTFT+A V +A+ RP +V+A
Sbjct: 5   FQLVSDFSPAGDQPAAIETLIEGLENGEMWQTLLGVTGSGKTFTIANVAQAVGRPMMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSE K FFP+N+VEYFVSYYDYYQPEAYVP +DT+I+K++S+NEQI++MR 
Sbjct: 65  PNKTLAAQLYSEMKEFFPNNSVEYFVSYYDYYQPEAYVPSSDTFIDKDASVNEQIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D I+VSSVSCIYG+G  ++Y +M++ L  GD + Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDAIIVSSVSCIYGLGEKDAYLEMVLHLVQGDVISQRNILRRLTELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + RGT+RV G+ I+IFP+  E  A RV +F ++IE+IS F PLTG+ ++ +  I IY
Sbjct: 185 DIELHRGTYRVRGEVIDIFPAESERDAVRVELFDDEIEQISYFDPLTGEVLQRLSRITIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  L  A+  IKEEL+ RL  L    +L+EAQRLEQR  +D+EML   G C 
Sbjct: 245 PKTHYVTPRDNLLKAVDAIKEELRERLEHLNSHDKLVEAQRLEQRTRFDIEMLLELGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGE PPTLF+Y+P D++L +DESHV +PQI  MY+GD  RK TL  Y
Sbjct: 305 GIENYSRHLSGRGPGEAPPTLFDYLPNDAILVIDESHVMVPQIGAMYKGDRSRKETLVNY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEEW  L P TI VSATP  +E E     IVEQ++RPTGLVDP VE
Sbjct: 365 GFRLPSALDNRPLMFEEWEKLAPQTIFVSATPSKYENEHS-STIVEQVVRPTGLVDPQVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI+       R+L+T LTKRM+EDLT+YL E N++VRY+HS++ T+E
Sbjct: 424 IRPVGTQVDDLLSEIHKRTAVNERVLVTTLTKRMSEDLTDYLREHNVKVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG+FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 484 RVEILRDLRLGEFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD IT S+Q A+DET RRREKQL HN++H I PQ +K+ I   +D    + 
Sbjct: 544 NLNGRAILYADEITGSMQRAMDETERRREKQLAHNEEHGITPQGIKKAIRAGMDDAKDKK 603

Query: 741 AATTNISID--AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +      +  A+  +L+ ++    ++ + + M+ AA NL FEEAA++RDE++ L+S
Sbjct: 604 DSDYAKVAEEQAEYAALTPQQLAKRIQKIEQSMYKAAQNLEFEEAAKLRDELEHLRS 660


>gi|83647651|ref|YP_436086.1| excinuclease ABC subunit B [Hahella chejuensis KCTC 2396]
 gi|83635694|gb|ABC31661.1| excinuclease ABC, B subunit [Hahella chejuensis KCTC 2396]
          Length = 670

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/667 (56%), Positives = 489/667 (73%), Gaps = 18/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ++ +Y P+GDQP AIA L+ G+      Q LLGVTGSGKTFTMA VI  MQRPA+VMA
Sbjct: 4   FQLKANYQPAGDQPGAIAGLVDGLRDGLLHQTLLGVTGSGKTFTMANVIAEMQRPAMVMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++MR 
Sbjct: 64  HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++V++VS IYG+G  +SY +M++ L  GD V+Q+ LL  L + QY R 
Sbjct: 124 SATKALMERKDVVIVATVSAIYGLGDPQSYKKMMLHLDRGDKVDQRSLLRRLAELQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + R  +RV GD I++FP+  E  A R+ +F ++IE +S F PLTG+  R V    IY
Sbjct: 184 DLELHRANYRVRGDVIDVFPAESESDALRIELFDDEIESLSWFDPLTGEVYRRVPRATIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY TPR  +  A + IK EL+ RL +     +LLEAQRLE+R  YDLEM+   G C 
Sbjct: 244 PKTHYATPRQVILDATEQIKTELQERLQQFRGSSKLLEAQRLEERTRYDLEMMYELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D+LLF+DESHVTIPQI  MYRGD  RK TL  Y
Sbjct: 304 GIENYSRYLSGRQAGEPPPTLFDYLPSDALLFIDESHVTIPQIGAMYRGDRSRKETLVSY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+EW  L P  I VSATPG++E +  QG +VEQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPLRFDEWERLAPQMIFVSATPGNYEADH-QGQVVEQVVRPTGLVDPDIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +  A TQV+D+  +I+   ++  R+L+T LTKRMAEDLT++L ++ +RVRY+HS+V+T+E
Sbjct: 423 VLPASTQVDDLLGQIHDRVERNERVLVTTLTKRMAEDLTDFLLDKGVRVRYLHSDVETVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736
           NV  K ILYAD IT S+Q A+DET RRR KQ+ +N++H + P+ + +K+ ++++      
Sbjct: 543 NVRGKAILYADKITGSMQRAMDETERRRNKQISYNEEHGVIPRGLDKKVADIMEGARVPG 602

Query: 737 ---------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                    + E A++ N+  +A+    + ++    L+ L   M+ AA NL FE+AA++R
Sbjct: 603 SKKGASQRRVAETASSYNVEAEAR----TPQEYAKMLQKLETAMYEAARNLEFEKAAQLR 658

Query: 788 DEIKRLK 794
           D++K LK
Sbjct: 659 DQLKELK 665


>gi|95929119|ref|ZP_01311864.1| excinuclease ABC, B subunit [Desulfuromonas acetoxidans DSM 684]
 gi|95135020|gb|EAT16674.1| excinuclease ABC, B subunit [Desulfuromonas acetoxidans DSM 684]
          Length = 663

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/656 (56%), Positives = 489/656 (74%), Gaps = 5/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y P+GDQP AI +L++GI      Q+LLGVTGSGKTFTMA V+E +QRP +V+A
Sbjct: 4   FTLKSVYQPAGDQPKAIEELVEGIEDGAPHQVLLGVTGSGKTFTMANVVERVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+  FP+NAVEYFVSYYDYYQPEAYV  TDT+IEK+SSINE+ID++RH
Sbjct: 64  HNKTLAAQLYGEFRELFPNNAVEYFVSYYDYYQPEAYVASTDTFIEKDSSINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL R D ++V+SVSCIYG+GS E+Y  M+V L++G  +E+  LL  LV+ QY+R 
Sbjct: 124 SATRSLLTRRDVLIVASVSCIYGLGSPEAYFGMLVGLEVGMELERNSLLKKLVEIQYQRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GDS+EIFP++ ED+A R+  FG++I+ ISE  PL G  I  +    I+
Sbjct: 184 DADFHRGTFRVRGDSVEIFPAYEEDLALRIEFFGDEIDAISEIDPLRGTVIDKLNKTSIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  RPTL  A+K I++EL+ R+       +L+EAQR+EQR  +D+E++E  G CQ
Sbjct: 244 PASHYVATRPTLERAIKQIQDELQQRITYFRDRNQLIEAQRIEQRTMFDIEVMEEMGYCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+ GR  GEPP TLF+Y P+D+LLF+DESHV++ Q+  MYRGD  RK  L  Y
Sbjct: 304 GIENYSRYMDGRGEGEPPATLFDYFPDDALLFIDESHVSVSQVGAMYRGDRSRKENLVGY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+      T+ VSATP  +ELE+ QG++VEQI+RPTGLVDPP+E
Sbjct: 364 GFRLPSALDNRPLKFEEFESKNLQTVYVSATPADYELEKAQGVVVEQIVRPTGLVDPPIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A+ QV+D+ ++I        RIL+T LTKRMAEDLT YL E  IRVRY+HS++ T+E
Sbjct: 424 IRPAQQQVDDLVEQIRDTIATQARILVTTLTKRMAEDLTGYLEEIGIRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIR LR G FDVL+GINLLREGLDIPE GLV ILDADKEGFLRS+ SLIQT GRAAR
Sbjct: 484 RMEIIRGLRQGDFDVLIGINLLREGLDIPEVGLVTILDADKEGFLRSERSLIQTCGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +VI+YAD IT+S+Q  +DET RRR++QL  N +H I P+SV + +  +++ +    
Sbjct: 544 NVDGRVIMYADRITRSMQACLDETERRRQQQLAFNAEHGIVPKSVSKSMRTILEDL---K 600

Query: 741 AATTNISIDAQQLS--LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             +  ++  A++L+   S  + +  + ++RK+M  AA  LNFE+AA +RD++ +L+
Sbjct: 601 GVSAEVAQVAEELADWHSPAELRKKINAVRKEMLAAAAELNFEQAAELRDQLLKLE 656


>gi|270158508|ref|ZP_06187165.1| excinuclease ABC subunit B [Legionella longbeachae D-4968]
 gi|289166654|ref|YP_003456792.1| excinuclease ABC subunit B [Legionella longbeachae NSW150]
 gi|269990533|gb|EEZ96787.1| excinuclease ABC subunit B [Legionella longbeachae D-4968]
 gi|288859827|emb|CBJ13808.1| excinuclease ABC subunit B [Legionella longbeachae NSW150]
          Length = 663

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/655 (56%), Positives = 481/655 (73%), Gaps = 1/655 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++  D+ P+GDQP AIA L+ G+ S    Q LLGVTGSGKTFT+A VI+AM+RPA++M
Sbjct: 4   LFKIYADFQPAGDQPTAIASLIDGLKSGLAKQTLLGVTGSGKTFTIAHVIQAMRRPALIM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSIN+ I++MR
Sbjct: 64  APNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINDHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+V++VS IYG+G  +SY +M++ L  G+  +Q+++L  L + QY R
Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMVLHLSRGEQSDQRKILRRLAEMQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +  + RG FRV GD I+IFP+  E  A RV +F +++E I++F PLTG+ +R +  + +
Sbjct: 184 TNFALERGQFRVHGDVIDIFPADSEKEAIRVELFDDEVENIAQFDPLTGEILRRLPRVTV 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  +HYVTPR  +   + ++KEEL+ RL E   + +L+EAQRLEQR  +D+EM+   G C
Sbjct: 244 FPKTHYVTPRERILQTVDWVKEELQERLAEFNAQNKLVEAQRLEQRTCFDIEMMLELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P+++LL +DESHVT+PQI GMYRGD  RK TL +
Sbjct: 304 SGIENYSRYLSGREAGEPPPTLFDYLPDEALLIIDESHVTVPQIGGMYRGDRSRKETLVQ 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+    P TI +SATPG +E E     + EQ++RPTGL+DP V
Sbjct: 364 YGFRLPSALDNRPLRFEEFEARSPQTIYISATPGPYEQEHSDN-VAEQVVRPTGLIDPEV 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR  RTQV+D+  EI    +   RIL+T LTKRMAEDLT+YL E  I+VRY+HS++ T+
Sbjct: 423 EIRPVRTQVDDLMSEIRQVIRHNGRILVTTLTKRMAEDLTDYLNEHGIKVRYLHSDIDTV 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAA
Sbjct: 483 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSDRSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  + ILYAD IT S+Q A+DET RRREKQ   N+ H I P+ + + I ++++     
Sbjct: 543 RNMKGRAILYADKITGSMQRALDETNRRREKQQAFNEAHGITPKGINKSIADIMEGAFQG 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      +    S ++   H+ +L KQM+L A N+ FE AA++RDE   LK
Sbjct: 603 KRKVAVAESVPEYKHWSTQELIKHINTLEKQMYLHAKNMEFEAAAKVRDEYLLLK 657


>gi|34498607|ref|NP_902822.1| excinuclease ABC subunit B [Chromobacterium violaceum ATCC 12472]
 gi|81834593|sp|Q7NTA7|UVRB_CHRVO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|34104461|gb|AAQ60819.1| excinuclease ABC subunit B [Chromobacterium violaceum ATCC 12472]
          Length = 670

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/662 (56%), Positives = 484/662 (73%), Gaps = 1/662 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   + P+GDQPAAI QL++G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 10  FQLNQPFPPAGDQPAAIEQLVEGLSDGLSYQTLLGVTGSGKTYTMANVIARTGRPAIIMA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE + FFPHNAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++MR 
Sbjct: 70  HNKTLAAQLYSEMREFFPHNAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S+LER DCI+V++VS IYGIG    Y QMI+ LK G++  Q++++S L   QY R 
Sbjct: 130 SATKSILERPDCIIVATVSAIYGIGDPSDYHQMILHLKEGETTPQRDIISRLTTMQYSRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD I+I+P+   D A RVS+F +++E ++ F PLTG   + V    ++
Sbjct: 190 DLDFGRGTFRVRGDVIDIYPAESSDTALRVSLFDDEVETLTLFDPLTGTTKQRVGRYTVF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IK+EL+ R+   +KEG+L+EAQR+EQR  +DLEML   G C+
Sbjct: 250 PSSHYVTPRDTVLRACEQIKDELRHRIEWYQKEGKLVEAQRIEQRTRFDLEMLYEMGFCK 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +GR PG+PPPTL +Y+P+++L+F+DESHVT+PQ+  MY+GD  RKA L EY
Sbjct: 310 GIENYSRHFSGRGPGDPPPTLIDYLPKNALMFIDESHVTVPQVGAMYKGDAARKANLVEY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  L P TI VSATP  +E +   G +VEQ++RPTGLVDP +E
Sbjct: 370 GFRLPSAADNRPLKFHEFEQLMPQTIFVSATPAVYEKDHA-GQVVEQVVRPTGLVDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI     +G R+L+T LTKRMAE L +Y  E  ++VRY+HS++ T+E
Sbjct: 429 IRPVATQVDDLLSEIRERMARGERVLVTTLTKRMAEQLADYYTEHGVKVRYLHSDIDTVE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 489 RVEIIRDLRLGMFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K +LYAD IT S++ A+DET RRR KQ+  N +H I P+ V++KI ++ID +   +
Sbjct: 549 NLRGKALLYADRITDSMRKAMDETERRRAKQMAFNAEHGIVPKGVEKKIKDIIDGVYSVE 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
           A    +  +A    + +K     +K L K+M  AA NL FE AARIRDE+K+LK   +  
Sbjct: 609 AERKKLVDEAAVAMMDEKTLSKEIKRLEKEMMEAARNLEFERAARIRDELKQLKEKAWLS 668

Query: 801 GL 802
            L
Sbjct: 669 DL 670


>gi|294141104|ref|YP_003557082.1| excinuclease ABC subunit B [Shewanella violacea DSS12]
 gi|293327573|dbj|BAJ02304.1| excinuclease ABC, B subunit [Shewanella violacea DSS12]
          Length = 671

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/664 (55%), Positives = 492/664 (74%), Gaps = 6/664 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++++DY P+GDQP AIA+L+ GI S    Q LLGVTGSGKTFT+A VI+ M RP I+
Sbjct: 4   SIFRLESDYSPAGDQPKAIAKLVDGIESGLATQTLLGVTGSGKTFTIANVIKKMGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP T+T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  ESY +M++ L++GD + Q+++L  L + QYK
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPESYLKMLLHLRVGDFMGQRDILIRLSELQYK 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGTFRV G+ I+IFP+  +  A RV +F ++IE +S F PLTG  I+ +  I 
Sbjct: 184 RNDIALDRGTFRVRGEVIDIFPADSDKNAIRVELFDDEIERLSLFDPLTGHIIKRIARIS 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYVTPR  +  A + IK EL+ R  +L    +L+EAQR+ +R+ YDLEM+   G 
Sbjct: 244 VYPKSHYVTPREKIIAATEEIKVELRERKQQLLDNNKLIEAQRISERVQYDLEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GE PPTL +Y+P+D LL +DESHVT+PQI  MY+GD  RK+ L 
Sbjct: 304 CSGIENYSRYLSGRATGEGPPTLLDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKSNLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP  +E+++C G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEDLMPQTIFVSATPSQYEIDKCDGEIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R   TQV+D+  EI    +   R+L+T LTKRM+EDL+EYL E  I+VRY+HS++ T
Sbjct: 424 VEVRPVGTQVDDLLSEIGKRIKVDERVLVTTLTKRMSEDLSEYLDEHGIKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQT+GRA
Sbjct: 484 VERVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTMGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----- 733
           ARN+N KVILYAD ITKS+  A+ ET RRR+ Q ++N  + I P+ V +KI +V+     
Sbjct: 544 ARNINGKVILYADRITKSMAAAMGETDRRRKMQHQYNLDNGITPKGVVKKITDVMDVGER 603

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAH-LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           D  +L D ++ N++ +  +  +      +H + +L KQMH  A NL FE+AA +RD++ +
Sbjct: 604 DKGILGDYSSLNVAQNRAKYVVQDAASLSHQIDALEKQMHEHAKNLEFEQAAAVRDQVLK 663

Query: 793 LKSS 796
           L+ +
Sbjct: 664 LRDA 667


>gi|309781136|ref|ZP_07675873.1| excinuclease ABC subunit B [Ralstonia sp. 5_7_47FAA]
 gi|308919957|gb|EFP65617.1| excinuclease ABC subunit B [Ralstonia sp. 5_7_47FAA]
          Length = 724

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/683 (55%), Positives = 497/683 (72%), Gaps = 15/683 (2%)

Query: 121 KIWTPHRSWSINNHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGV 176
           ++ +PH      + SK +TF    FQ+   Y P+GDQP AI QL++ I      Q LLGV
Sbjct: 34  QVPSPH------DESKFVTFEGSPFQLYQPYPPAGDQPEAIRQLVENIEDGLSYQTLLGV 87

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           TGSGKTFTMA VI  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEA
Sbjct: 88  TGSGKTFTMANVIAQVGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEA 147

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           YVP+ D +IEK+SSINE I++MR SAT+SLLER D ++V++VS IYGIG+   Y QMI+ 
Sbjct: 148 YVPQRDLFIEKDSSINEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPSEYHQMILT 207

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L+ GD V Q+++++ L+  QY R +    RGTFRV GD+++IFP+   ++A R+ +F ++
Sbjct: 208 LRAGDKVSQRDVIARLIAMQYTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDE 267

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           +E +  F PLTG+  + +    +Y +SHYVTPR T+  A++ IK EL+ RL    KE +L
Sbjct: 268 VESLQLFDPLTGRVRQKIPRFTVYPSSHYVTPRETVLRAIETIKAELRERLDFFYKENKL 327

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           +EAQRLEQR  +DLEML+  G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DES
Sbjct: 328 VEAQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGSAPGEPPPTLVDYLPPDALMFLDES 387

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536
           HV I Q++GMY GD  RK TLAEYGFRLPS +DNRPL+F E+         VSATPG +E
Sbjct: 388 HVLIGQLNGMYNGDRARKETLAEYGFRLPSALDNRPLKFAEFETKMRQVTFVSATPGDYE 447

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
            +     +VEQ++RPTGLVDP +E+R A TQV+D+  EI++  + G R+L+T LTKRMAE
Sbjct: 448 KKTAGTEVVEQVVRPTGLVDPIIEVRPATTQVDDLLSEIHVRVEAGERVLVTTLTKRMAE 507

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            LTE+L E  ++VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAI
Sbjct: 508 QLTEFLSENGVKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAI 567

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
           LDADKEGFLR++ SLIQTIGRAARNVN   ILYAD +T S++ AIDET RRR KQ+ HN+
Sbjct: 568 LDADKEGFLRAERSLIQTIGRAARNVNGTAILYADRMTDSMKKAIDETERRRAKQIAHNE 627

Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMH 772
            H I P+ V ++I ++ID +   D A   +   AQ+ +    +S+K+    +K L KQM 
Sbjct: 628 AHGITPRGVVKRIKDIIDGVYNVDDARAELKA-AQEAAKYEDMSEKQASKEIKRLEKQML 686

Query: 773 LAADNLNFEEAARIRDEIKRLKS 795
             A NL FE+AA +RD++ +LKS
Sbjct: 687 DHAKNLEFEKAAAVRDQLAKLKS 709


>gi|241662553|ref|YP_002980913.1| excinuclease ABC subunit B [Ralstonia pickettii 12D]
 gi|240864580|gb|ACS62241.1| excinuclease ABC, B subunit [Ralstonia pickettii 12D]
          Length = 696

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/683 (55%), Positives = 497/683 (72%), Gaps = 15/683 (2%)

Query: 121 KIWTPHRSWSINNHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGV 176
           ++ +PH      + SK +TF    FQ+   Y P+GDQP AI QL++ I      Q LLGV
Sbjct: 6   QVPSPH------DESKFVTFEGSPFQLYQPYPPAGDQPEAIRQLVENIEDGLSYQTLLGV 59

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           TGSGKTFTMA VI  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEA
Sbjct: 60  TGSGKTFTMANVIAQVGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEA 119

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           YVP+ D +IEK+SSINE I++MR SAT+SLLER D ++V++VS IYGIG+   Y QMI+ 
Sbjct: 120 YVPQRDLFIEKDSSINEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPSEYHQMILT 179

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L+ GD V Q+++++ L+  QY R +    RGTFRV GD+++IFP+   ++A R+ +F ++
Sbjct: 180 LRAGDKVSQRDVIARLIAMQYTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDE 239

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           +E +  F PLTG+  + +    +Y +SHYVTPR T+  A++ IK EL+ RL    KE +L
Sbjct: 240 VESLQLFDPLTGRVRQKIPRFTVYPSSHYVTPRETVLRAIETIKAELRERLDFFYKENKL 299

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           +EAQRLEQR  +DLEML+  G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DES
Sbjct: 300 VEAQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGSAPGEPPPTLVDYLPPDALMFLDES 359

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536
           HV I Q++GMY GD  RK TLAEYGFRLPS +DNRPL+F E+         VSATPG +E
Sbjct: 360 HVLIGQLNGMYNGDRARKETLAEYGFRLPSALDNRPLKFAEFETKMRQVTFVSATPGDYE 419

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
            +     +VEQ++RPTGLVDP +E+R A TQV+D+  EI++  + G R+L+T LTKRMAE
Sbjct: 420 KKTAGTEVVEQVVRPTGLVDPIIEVRPATTQVDDLLSEIHVRVKAGERVLVTTLTKRMAE 479

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            LTE+L E  I+VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAI
Sbjct: 480 QLTEFLSENGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAI 539

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
           LDADKEGFLR++ SLIQTIGRAARNVN   ILYAD +T S++ AIDET RRR KQ+ HN+
Sbjct: 540 LDADKEGFLRAERSLIQTIGRAARNVNGTAILYADRMTDSMKKAIDETERRRAKQIAHNE 599

Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMH 772
            H I P+ V ++I ++ID +   D A   +   AQ+ +    +S+K+    +K L KQM 
Sbjct: 600 AHGITPRGVVKRIKDIIDGVYNVDDARAELKA-AQEAAKYEDMSEKQASKEIKRLEKQML 658

Query: 773 LAADNLNFEEAARIRDEIKRLKS 795
             A NL FE+AA +RD++ +LKS
Sbjct: 659 DHAKNLEFEKAAAVRDQLAKLKS 681


>gi|119505293|ref|ZP_01627368.1| excinuclease ABC subunit B [marine gamma proteobacterium HTCC2080]
 gi|119458984|gb|EAW40084.1| excinuclease ABC subunit B [marine gamma proteobacterium HTCC2080]
          Length = 694

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/669 (55%), Positives = 492/669 (73%), Gaps = 11/669 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ + + P+GDQPAAI QL +GI +    Q+LLGVTGSGKTFTMA VIE +QRP IVM
Sbjct: 25  LFEISSSFEPAGDQPAAIVQLTEGIQAGLASQILLGVTGSGKTFTMAHVIEKLQRPTIVM 84

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQLY EFK FFP+NAVEYFVSYYDY+QPEAYVP +DT+IEK++ +N+ I++MR
Sbjct: 85  AHNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYFQPEAYVPSSDTFIEKDAQVNDHIEQMR 144

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER DC+VV++VS IYG+G  E+Y +M++ L  G+ ++Q+ +L  L + QY R
Sbjct: 145 LSATKALLEREDCLVVATVSAIYGLGDPEAYFKMVMHLSRGEIIDQRGVLRQLAELQYTR 204

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGT+RV G+ I+IFP+  +++A R+ +F  +IE IS F PLTG+    +  + I
Sbjct: 205 NDIDFRRGTYRVRGEIIDIFPAESDELAIRIELFDEEIENISRFDPLTGEIHDKLPRVTI 264

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  +HYV+ R T+  A+  I+EEL+ R+ + ++  +LLEAQR++QR  YD+EM+   G C
Sbjct: 265 FPKTHYVSSRDTMMGAIDLIEEELEQRVKQFKEADKLLEAQRIQQRTRYDIEMIRELGFC 324

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           Q IENYSRYL+GR PGEPPPTLFEY+P ++L+ VDESHVT+PQI GMY+GD  RK TL E
Sbjct: 325 QGIENYSRYLSGRAPGEPPPTLFEYLPSNALIMVDESHVTVPQIGGMYKGDRSRKETLVE 384

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEEW  LRP  + VSATPG++ELE   G  VEQ++RPTGLVDP V
Sbjct: 385 YGFRLPSALDNRPLRFEEWEHLRPQGVFVSATPGAYELEHT-GRTVEQVVRPTGLVDPEV 443

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R ARTQV+D+  EI      G R+L+T LTKRMAEDLTE+L E ++RVRY+HS++ T+
Sbjct: 444 EVRPARTQVDDLLKEIRETVAIGDRVLVTTLTKRMAEDLTEFLSEHDVRVRYLHSDIDTV 503

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQT+GRAA
Sbjct: 504 ERVEIIRDLRLGQFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTMGRAA 563

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----- 734
           R++  + ILYAD IT S++ A+DET RRR KQ+E N+ + I P+ +++ + ++++     
Sbjct: 564 RHIRGRAILYADKITGSMERAMDETQRRRTKQIEFNEANGITPKGIEKSVQDILEGARRM 623

Query: 735 PILLEDAATTNISIDAQQ-----LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           P     A    ++ +        ++L+       +  L  QM   A NL FEEA RIRD+
Sbjct: 624 PTKARSAKDRRVAEEKAAYAAEVVNLTPAALARKIAQLEGQMLEHAKNLEFEEAGRIRDQ 683

Query: 790 IKRLKSSPY 798
           +  +K   +
Sbjct: 684 LAEIKQVAF 692


>gi|71898922|ref|ZP_00681089.1| Excinuclease ABC, B subunit [Xylella fastidiosa Ann-1]
 gi|71731334|gb|EAO33398.1| Excinuclease ABC, B subunit [Xylella fastidiosa Ann-1]
          Length = 669

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/663 (55%), Positives = 495/663 (74%), Gaps = 6/663 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
           FFQ+ + Y PSGDQPAA+ +L+   H+    Q+LLGVTGSGKT+T+A V+E +Q+P +VM
Sbjct: 4   FFQLVSSYSPSGDQPAAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR
Sbjct: 64  APNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +AT++LL R+D +VV++VS IYG+G+ E Y  + + L +G+ +EQ++L+  L + QY R
Sbjct: 124 LAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLILSLGEHIEQRQLIRHLTELQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++ ++RG+FRV G+ +++FP+  E  A R+ +F  +IE +S F PLTGQ +R ++   +
Sbjct: 184 NELDLVRGSFRVRGEVVDVFPAESEIEALRIELFDGEIESLSLFDPLTGQTVRKLQRFSV 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HY T R    +A+  IK+ELK  L  L    +L+EAQRL QR  +DLEM+   G C
Sbjct: 244 YPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  M++GD  RK TL E
Sbjct: 304 NGIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEEW    P +I VSATPGS+E  +  G ++E ++RPTGL+DP +
Sbjct: 364 FGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYEFRESAGEVIELLVRPTGLIDPEI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR   TQV+D+  +IN   + G R+L+T LTKRMAE+LTEYL E+ IR+RY+HSE+ T+
Sbjct: 424 EIRPVATQVDDLISQINACIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEIDTV 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS +SLIQTIGRAA
Sbjct: 484 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----DP 735
           R+V  + ILYAD +T+S++ AIDET RRR+KQ E+N ++ I P+SV   I +++    D 
Sbjct: 544 RSVRGRAILYADKVTRSMRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDG 603

Query: 736 ILLEDAATTN--ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           + ++          + A   +L++ +  A +K L +QM+  A +L FE+AARIRD+I+RL
Sbjct: 604 VEVKSKGKGRRVDEVPADYGALNQAEIAAQMKVLEQQMYQHARDLEFEDAARIRDQIQRL 663

Query: 794 KSS 796
           + +
Sbjct: 664 REA 666


>gi|88706030|ref|ZP_01103738.1| excinuclease ABC, B subunit [Congregibacter litoralis KT71]
 gi|88699744|gb|EAQ96855.1| excinuclease ABC, B subunit [Congregibacter litoralis KT71]
          Length = 672

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/668 (55%), Positives = 484/668 (72%), Gaps = 10/668 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI  +++GI +    Q LLGVTGSGKTFTMA VIE +QRP IVMA
Sbjct: 5   FKVNSSFKPAGDQPAAIKSIVEGIQAGLAAQTLLGVTGSGKTFTMAHVIEQLQRPTIVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER DCIVV++VS IYG+G  +SY +M++ +  G+ ++Q+E+L  L + QY+R 
Sbjct: 125 SATKALLERKDCIVVATVSAIYGLGDPKSYFKMVMHISRGEMIDQREVLRHLAELQYQRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGT+RV GD I++FP+  E  A R+ +F  ++E IS F PLTG  I  V  + IY
Sbjct: 185 DIDFARGTYRVRGDVIDVFPAEAEAEAIRIELFDEEVENISLFDPLTGAIIAKVPRVTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVT R  +  A+++I+ EL  R+ +L+   +L+EAQRL QR  YD+EM+   G CQ
Sbjct: 245 PKTHYVTSRDIMLNAIEHIEVELDERVKQLKSVEKLVEAQRLSQRTRYDIEMIRELGYCQ 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSRYL+GR PGE PPTL+EY+P+D+L+ +DESH +IPQI  MY+GD  RK TL EY
Sbjct: 305 GVENYSRYLSGRAPGEAPPTLYEYLPDDALVIIDESHASIPQIGAMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW  L P  + VSATPG +E E   G +VEQ++RPTGL DP +E
Sbjct: 365 GFRLPSALDNRPLRFEEWENLLPQAVFVSATPGPYE-EAHAGQVVEQVVRPTGLTDPEIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  EI+ A + G R+L+T LTKRM+EDLTEYL E ++RVRY+HS++ T+E
Sbjct: 424 IRPATTQVDDLLGEIHKAVEMGDRVLVTTLTKRMSEDLTEYLNEHDVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR AR
Sbjct: 484 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSDRSLIQTIGRGAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-----P 735
           N+  + ILYAD +T S+Q AIDET RRR KQ+  N+ +NI P  V + I ++++     P
Sbjct: 544 NLRGRAILYADKVTGSMQRAIDETDRRRRKQVAFNEANNITPIGVTKSIQDIMEGARRMP 603

Query: 736 ILL----EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                  +  A   ++   + L LS       L  +  QMH  A NL FE+AA +RD++ 
Sbjct: 604 TKAKAKGQKVAEETLAYGQELLKLSPAALSRRLDKMEAQMHEHAKNLEFEQAAALRDQLT 663

Query: 792 RLKSSPYF 799
            +K   + 
Sbjct: 664 EIKQQTFM 671


>gi|300114475|ref|YP_003761050.1| excinuclease ABC subunit B [Nitrosococcus watsonii C-113]
 gi|299540412|gb|ADJ28729.1| excinuclease ABC, B subunit [Nitrosococcus watsonii C-113]
          Length = 701

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/677 (56%), Positives = 493/677 (72%), Gaps = 23/677 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P+GDQP AIA+L +G+ + E  Q LLGVTGSGKTFT+A +I+ +QRP IV+A
Sbjct: 5   FQLVSDYQPAGDQPKAIARLTEGLAAGEMYQTLLGVTGSGKTFTIANMIQQVQRPTIVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSE + FFPHNAV YFVSYYDYYQPEAYVP +DTYI K++S+N+ I++MR 
Sbjct: 65  PNKTLAAQLYSEMREFFPHNAVGYFVSYYDYYQPEAYVPASDTYIGKDASVNDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++ LER D IVV+SVS IYG+G  +SY  M++ L +GD+V+ + +L  L + QY+R 
Sbjct: 125 SATKAFLERPDAIVVASVSAIYGLGDKDSYLNMVLHLMVGDTVDHRGILRRLAELQYQRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGT+RV G+ I+I+P+  E  A RV +F ++IE +S F PLTG+ +  V  + +Y
Sbjct: 185 DTELRRGTYRVRGEIIDIYPAESEQEAIRVELFDDEIESLSYFDPLTGEVLHQVSRLTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  L  A+  IK EL  RL +L    +L+EAQRLEQR  +D+EM+   G C 
Sbjct: 245 PKTHYVTPREVLLQAVDEIKIELAERLEQLYGVNKLVEAQRLEQRTCFDIEMILELGYCA 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R PGE PPTLF+Y+P+++LL +DESHVT+PQ+  MYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSRRQPGEAPPTLFDYLPKNALLVIDESHVTVPQLGAMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW  L P  I VSATPG +E +Q  G ++EQ++RPTGLVDP VE
Sbjct: 365 GFRLPSALDNRPLKFEEWEQLAPQIIFVSATPGPYE-QQRSGAVIEQVVRPTGLVDPAVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A +QV+D+  EI   A    R+L+TVLTKRMAEDLT+YL +  +RVRY+HS++ T+E
Sbjct: 424 VRPAGSQVDDLLSEIRQRAAANERVLVTVLTKRMAEDLTQYLEQHEVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           N++ + ILY DT+T S+  AI ET RRR+KQL  N+ H I P+ +++ + E+ID      
Sbjct: 544 NLHGRAILYGDTVTGSMGRAIAETERRRKKQLAFNETHRIIPRGIQKAVREIIDGVYTPS 603

Query: 735 --------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
                   P  +E+ A     +  QQL+         L+ L +QMH  A NL FE+AAR+
Sbjct: 604 PGKGGRHSPDQVEEKAAEYTRLPPQQLA-------KRLQQLERQMHKHAQNLEFEQAARL 656

Query: 787 RDEIKRLKSSPYFQGLD 803
           RDEIK++K    F G D
Sbjct: 657 RDEIKKIKGW-VFNGGD 672


>gi|88810664|ref|ZP_01125921.1| Excinuclease ABC, B subunit [Nitrococcus mobilis Nb-231]
 gi|88792294|gb|EAR23404.1| Excinuclease ABC, B subunit [Nitrococcus mobilis Nb-231]
          Length = 676

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/660 (56%), Positives = 490/660 (74%), Gaps = 8/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y P+GDQP AI  L + +    + Q LLGVTGSGKTFTMA VI  +QRPA+V+A
Sbjct: 5   FELRSRYQPAGDQPGAIEALCQSLVLGNQHQTLLGVTGSGKTFTMANVIARLQRPALVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EF+ FFP NAVEYFVSYYDYYQPEAYVP +DTYI K++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEFREFFPTNAVEYFVSYYDYYQPEAYVPASDTYIAKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++++ER D I+V+SVS IYG+G  ++Y  M++ L   D ++Q+ +L  L   QYKR 
Sbjct: 125 SATKAIIERRDTIIVASVSAIYGLGDPQAYLSMVLHLVRADRMDQRFILRRLADLQYKRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGT+RV GD I+IFP+  E+ A R+ +F ++IE +S F PLTG+ +R V  + IY
Sbjct: 185 DAELQRGTYRVRGDVIDIFPAESEEQAVRIELFDDEIESLSYFDPLTGEVMRRVPRLTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR TL  A+  IK+ELK RL EL + G+ LEA+RLEQR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRETLLDAIDKIKQELKARLEELRQAGKPLEAERLEQRTRFDLEMMAELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPP L +Y+P DSLLFVDESHVT+PQ+ GM+RGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRAAGEPPPCLLDYLPVDSLLFVDESHVTVPQLGGMFRGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+  L P  I VSATPGS+E  +C  ++VEQ++RPTGLVDP V 
Sbjct: 365 GFRLPSALDNRPLRFDEFERLAPQCIHVSATPGSYE-ARCSRVVVEQVVRPTGLVDPAVV 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A +QV+++  EI   A+ G R+L+T LTKRMAEDLT+YL E  +RVRY+HS++ T+E
Sbjct: 424 VRPAASQVDELLSEIRERAEIGERVLVTTLTKRMAEDLTDYLAEHGVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFD LVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 484 RVEIIRDLRLGKFDALVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           N++   ILYAD +T S++ AIDET RRR KQL  N +H I P+ +++ + ++++      
Sbjct: 544 NIHGTAILYADAMTDSMRRAIDETERRRAKQLAFNVRHGITPRGIEKAVADIMERESGGA 603

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           P   E  A     + +  + LS  +    +++L ++MH  A NL FEEAA++RDEIKR++
Sbjct: 604 PDSPEHFARVA-EVASPYVKLSPTQAVKRIQALEQRMHKHARNLEFEEAAQLRDEIKRIQ 662


>gi|119476531|ref|ZP_01616882.1| excinuclease ABC subunit B [marine gamma proteobacterium HTCC2143]
 gi|119450395|gb|EAW31630.1| excinuclease ABC subunit B [marine gamma proteobacterium HTCC2143]
          Length = 676

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/672 (55%), Positives = 487/672 (72%), Gaps = 12/672 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA LL+G+ +  + Q LLGVTGSGKTFT+A V+E +QRP IVMA
Sbjct: 5   FKVVSKFAPAGDQPTAIAGLLEGVRAGLRGQTLLGVTGSGKTFTIANVVEGIQRPTIVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVP +DT+I+K++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKDFFPGNAVEYFVSYYDYYQPEAYVPSSDTFIDKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER+D IVV++VS IYG+G  + Y +M++ L  GD V+Q+ +L  L + QY R 
Sbjct: 125 SATKALMERSDTIVVATVSAIYGLGDPKLYMKMMLHLDRGDQVDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGT+RV GD I++FP+  E  A R+ +F  +I+ +S F PLTG+  R V  + IY
Sbjct: 185 DIDFARGTYRVRGDVIDVFPADSEQEAVRIELFDEEIDSLSIFDPLTGEVYRRVPRVSIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A+  I+EELK RL +L    +L+EAQRLEQR  YDLEM+   G C 
Sbjct: 245 PKSHYVTPRETLLGALDKIEEELKERLEQLRNNNKLVEAQRLEQRTRYDLEMIRELGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G+PPPTLF+Y+P D+L+ +DESHV +PQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGTGDPPPTLFDYLPPDALVVIDESHVGVPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+EW  L    I VSATPG++E E     +VEQ++RPTGL DP +E
Sbjct: 365 GFRLPSALDNRPLRFDEWEQLVSQVIFVSATPGNYEAEHADR-VVEQVVRPTGLTDPEIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A +QV+D+  EI+   +   R+L+T LTKRM+EDLT+YL E  +RVRY+HS+++T+E
Sbjct: 424 IRPATSQVDDLLSEIHKRTKLEERVLVTTLTKRMSEDLTDYLSEHGVRVRYLHSDIETVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           N+N + ILYAD IT S++ AI ET RRREKQ+EHNK H I P  V + + ++++   +  
Sbjct: 544 NLNGRAILYADRITGSMERAIGETDRRREKQVEHNKVHGITPVGVVKDVADIMEGARVPG 603

Query: 739 ---------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                      AA       A+  +++ K+    +K + ++M   A NL FEEAA  RD 
Sbjct: 604 SKGKRNAKGRKAAEPAAHYQAEVAAMTPKQLVQEIKRMEQKMFEHAKNLEFEEAAATRDS 663

Query: 790 IKRLKSSPYFQG 801
           +  LK   +  G
Sbjct: 664 VSELKQRVFING 675


>gi|330722188|gb|EGH00083.1| Excinuclease ABC subunit B [gamma proteobacterium IMCC2047]
          Length = 670

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/668 (56%), Positives = 489/668 (73%), Gaps = 13/668 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T FQ+ + + PSGDQPAAI QL  GI +    Q LLGVTGSGKTFT A VI    RPA+V
Sbjct: 3   TDFQVISPFEPSGDQPAAIEQLSNGIEAGLAYQTLLGVTGSGKTFTAANVIANTGRPALV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY EFK FFP N+VEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEFKEFFPRNSVEYFVSYYDYYQPEAYVPASDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D IVV++VS IYG+G   +Y  M++ L  GD ++Q+ +L  L + QYK
Sbjct: 123 RLSATKALLERQDAIVVATVSAIYGLGDPGAYLNMVMHLDRGDRIDQRSVLRRLAELQYK 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ + R T+RV GD I+I+P+  +  A R+ +F ++IE I+ F PLTG+ ++ +  I 
Sbjct: 183 RNDVELHRATYRVRGDVIDIYPAESDRDAIRIELFDDEIESIAVFDPLTGEVLKRLPRIT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR TL  A + IKEELK RL +L    +L+EAQRLEQR  +D+EM+   G 
Sbjct: 243 IYPKTHYVTPRETLLEATEKIKEELKERLTQLRDNNKLVEAQRLEQRTNFDVEMILELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GE PPTLF+Y+P+++LLFVDESHVTIPQ+  MY+GD  RK TL 
Sbjct: 303 CNGIENYSRYLSGRPDGEAPPTLFDYLPDNALLFVDESHVTIPQLGAMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP+RFEEW    P T+ +SATPG +E E   G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMRFEEWEHAAPQTVFISATPGPYEDEHA-GQVVDQVVRPTGLIDPE 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           ++IR A TQV+D+  EIN       R+L+TVLTKRMAEDLTEY  E  +RVRY+HS++ T
Sbjct: 422 IQIRPASTQVDDLLSEINRRVANNERVLVTVLTKRMAEDLTEYYGEHGVRVRYVHSDIDT 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLR+G+FDVLVGINLLREG+DIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 482 VERVEIIRDLRIGEFDVLVGINLLREGIDIPEASLVAILDADKEGFLRSERSLIQTIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN N   ILYAD +T S+Q A+DET RRREKQL +NK+HNI P+SV + + ++++  + 
Sbjct: 542 ARNANGTAILYADRVTGSMQRAMDETERRREKQLAYNKEHNITPRSVTKSVEDILEGAVT 601

Query: 739 EDA----------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
             A             +  +D + ++   + GK  L  L  +M+ AA N+ FEEAA+ RD
Sbjct: 602 PGARGKQSKKVAEPQADYQVDPKTMT-PVQLGKL-LNQLEDKMYEAAKNMKFEEAAQYRD 659

Query: 789 EIKRLKSS 796
           +I  + ++
Sbjct: 660 QISAINAN 667


>gi|126669089|ref|ZP_01740020.1| excinuclease ABC subunit B [Marinobacter sp. ELB17]
 gi|126626444|gb|EAZ97110.1| excinuclease ABC subunit B [Marinobacter sp. ELB17]
          Length = 689

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/673 (56%), Positives = 488/673 (72%), Gaps = 13/673 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AIA L+ GI S    Q LLGVTGSGKTFT+A VI+ +QRP IVMA
Sbjct: 18  FQVHSPYVPAGDQPKAIAALVDGIESGLAHQTLLGVTGSGKTFTIANVIQQIQRPTIVMA 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+ FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR 
Sbjct: 78  HNKTLAAQLYGEFREFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEHIEQMRL 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G  +SY +M++ L  GD ++Q+ +L  L + QY R 
Sbjct: 138 SATKALLERPDAIIVATVSAIYGLGDPQSYKKMMLHLDRGDQLDQRLILKRLAELQYTRN 197

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   R  +RV GD I++FP+  E  A R+ +F + +E +S F PLTG+ +R V  + +Y
Sbjct: 198 DIEFHRANYRVRGDVIDVFPAESEKEAIRIELFDDVVENLSFFDPLTGEMLRRVPRVTVY 257

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  +  A+++I+ EL  RL +L    RL+EAQRLE+R  YD+EM++  G C 
Sbjct: 258 PKSHYVTPRQNVLDAIEHIRVELDQRLTQLRDNNRLVEAQRLEERTRYDMEMMQELGYCN 317

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P ++LL VDESH +IPQI  MY+GD  RK TL EY
Sbjct: 318 GIENYSRYLSGRPPGEPPPTLFDYLPANALLVVDESHASIPQIGAMYKGDRSRKETLVEY 377

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEEW  + P  I VSATPG++E E  QG +VEQ++RPTGL+DP +E
Sbjct: 378 GFRLPSALDNRPMRFEEWERIAPQMIFVSATPGNYEAEH-QGQVVEQVVRPTGLLDPEIE 436

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  +I+       R+L+T LTKRM+EDLT++L E +IRVRY+HS++ T+E
Sbjct: 437 VRPASTQVDDLISQIHARVAVNERVLVTTLTKRMSEDLTDFLMEHDIRVRYLHSDIDTVE 496

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G+FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 497 RVEIIRDLRRGEFDVLVGINLLREGLDMPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 556

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S+Q AIDET RRR KQ EHN+ H I PQ + +KI +V++      
Sbjct: 557 NINGKAILYGDRITGSMQRAIDETARRRAKQAEHNEIHGITPQGLTKKIADVMEGASAGG 616

Query: 741 AATTNISIDAQQLS---------LSKKKGKAHLKSLRK---QMHLAADNLNFEEAARIRD 788
            +        QQ +         +  K  +A LK + +   +M+ AA +L+FE AAR+RD
Sbjct: 617 RSRNKSKRPGQQAAEEAEHYRTLVGNKSPQAVLKEMSRLEDEMYKAAADLDFETAARLRD 676

Query: 789 EIKRLKSSPYFQG 801
           +I  LK +    G
Sbjct: 677 DISELKEASLRTG 689


>gi|113461753|ref|YP_719822.1| excinuclease ABC subunit B [Haemophilus somnus 129PT]
 gi|112823796|gb|ABI25885.1| Excinuclease ABC subunit B [Haemophilus somnus 129PT]
          Length = 677

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/665 (57%), Positives = 488/665 (73%), Gaps = 14/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ PSGDQP AIA L++ ++     Q LLGVTGSGKTFT+A VI  + RPA+V+A
Sbjct: 9   FILHSDFQPSGDQPQAIANLVENLNDGLAHQTLLGVTGSGKTFTIANVIAKLNRPAMVLA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 69  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY +M++ L+ G  V+Q+++L+ L + QY R 
Sbjct: 129 SATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQHGAIVDQRQILAKLAELQYTRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     +    IY
Sbjct: 189 DQVFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGANFGAIPRYTIY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK EL+ R   L    RL+E QRL QR  +D+EM+   G C 
Sbjct: 249 PKTHYVTPRERILEAIEKIKLELQARREYLLANNRLVEEQRLTQRTQFDIEMMNELGYCS 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR+ GEPPPTLF+YIP D LL +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 309 GIENYSRYLSGRDEGEPPPTLFDYIPSDGLLIIDESHVTVPQIGGMYRGDRSRKETLVEY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+DP VE
Sbjct: 369 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGDEIIDQVVRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A+Q  R+L+T LTKRMAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 429 IRPVAIQVDDLLSEARKRAEQNERVLVTTLTKRMAEDLTDYLEEHGIRVRYLHSDIDTVE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 489 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD+ITKS+Q AIDET RRREKQ+++N +  I PQ++ +K+ E++D   +  
Sbjct: 549 NLNGKAILYADSITKSMQKAIDETHRRREKQMKYNAEKGIVPQALNKKVGELLD---IGQ 605

Query: 741 AATTNISIDAQQLSL-----------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            A T     A+  ++           S K  +  +K L +QM+  A +L FE+AA IRD+
Sbjct: 606 GAITKSKTKARAKTVAESSALYQKINSPKDYQQQVKKLEQQMYKFAQDLEFEKAAAIRDQ 665

Query: 790 IKRLK 794
           ++ LK
Sbjct: 666 LQELK 670


>gi|292493208|ref|YP_003528647.1| excinuclease ABC subunit B [Nitrosococcus halophilus Nc4]
 gi|291581803|gb|ADE16260.1| excinuclease ABC, B subunit [Nitrosococcus halophilus Nc4]
          Length = 681

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/660 (56%), Positives = 492/660 (74%), Gaps = 6/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ +DY P+GDQP AI QL++G+ + E  Q LLGVTGSGKTFT+A VI+ +QRP I++A
Sbjct: 5   LELVSDYQPAGDQPEAIGQLVEGLTAGEMYQTLLGVTGSGKTFTIANVIQQVQRPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSE + FFPHNAV YFVSYYDYYQPEAY+P +DTYI K++S+N+ I++MR 
Sbjct: 65  PNKTLAAQLYSEMREFFPHNAVGYFVSYYDYYQPEAYLPASDTYIGKDASVNDYIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++ LER D IVV+SVS IYG+G  +SY  M++ L +GD+V+Q+ +L  L + QY+R 
Sbjct: 125 SATKAFLERPDAIVVASVSSIYGLGDKDSYLNMVLHLMVGDTVDQRGILRRLAELQYQRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RGT+RV GD I+I+P+  E  A RV +F ++IE +S F PLTG+ +  V  + IY
Sbjct: 185 DMELGRGTYRVRGDVIDIYPAESEQEAIRVELFDDEIEGLSYFDPLTGEILYRVPRLTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  L  A++ IK EL  RL +L +  +L+EAQRLEQR  +D+EM+   G C 
Sbjct: 245 PKTHYVTPREILLQAVEDIKVELAERLEQLYRANKLVEAQRLEQRTRFDIEMILELGYCT 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R PGE PPTLF+Y+PE++LL +DESHVT+PQ+  MYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSRRQPGEAPPTLFDYLPENALLIIDESHVTVPQLGAMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW  L P  I VSATPG +E +Q  G +VEQ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLKFEEWERLAPQIIFVSATPGPYE-QQRSGAVVEQVVRPTGLIDPEVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +RSA TQV+D+  EI        R+L+TVLTKRMAEDLT+YL +  +RVRY+HS++ T+E
Sbjct: 424 VRSASTQVDDLLSEIRQRVMAAERVLVTVLTKRMAEDLTQYLEQHEVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ K ILY D  T S+  AI ET RRR+KQ+  N+ H I P+ V++ + E+ID +    
Sbjct: 544 NLHGKAILYGDETTGSMSRAIAETERRRKKQIAFNQLHGITPRGVQKSVREIIDGVYTPG 603

Query: 741 AAT----TNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    I+ +A + + L  ++    L+ L +QM+  A NL FEEAAR+RDEI+++K+
Sbjct: 604 TGNARQYARIAEEAAEYTRLPPQQLAKRLQQLEQQMYKHAQNLEFEEAARLRDEIQKIKA 663


>gi|77164648|ref|YP_343173.1| excinuclease ABC subunit B [Nitrosococcus oceani ATCC 19707]
 gi|254434586|ref|ZP_05048094.1| excinuclease ABC, B subunit [Nitrosococcus oceani AFC27]
 gi|90111042|sp|Q3JC03|UVRB_NITOC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|76882962|gb|ABA57643.1| Excinuclease ABC subunit B [Nitrosococcus oceani ATCC 19707]
 gi|207090919|gb|EDZ68190.1| excinuclease ABC, B subunit [Nitrosococcus oceani AFC27]
          Length = 687

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/676 (56%), Positives = 494/676 (73%), Gaps = 10/676 (1%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           KDI  FQ+ +DY P+GDQP AI +L +G+ + E  Q LLGVTGSGKTFT+A +I+ +QRP
Sbjct: 2   KDI--FQLVSDYQPAGDQPEAIERLTEGLAAGEMYQTLLGVTGSGKTFTIANMIQQVQRP 59

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            IV+APNK LAAQLYSE + FFP NAV YFVSYYDYYQPEAYVP +DTYI K++S+N+ I
Sbjct: 60  TIVLAPNKTLAAQLYSEMREFFPRNAVGYFVSYYDYYQPEAYVPASDTYIGKDASVNDHI 119

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           ++MR SAT++ LER D IVV+SVS IYG+G  +SY  M++ L +GD+V+ + +L  L + 
Sbjct: 120 EQMRLSATKAFLERPDAIVVASVSAIYGLGDKDSYLNMVLHLMVGDTVDHRGILRRLAEL 179

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY+R D  + RGT+RV G+ I+I+P+  E  A RV +F ++IE +S F PLTG+ +  V 
Sbjct: 180 QYQRNDRELYRGTYRVRGEIIDIYPAESEQEAIRVELFDDEIESLSYFDPLTGEILHRVS 239

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + IY  +HYVTPR  L  A+  IK EL  RL +L    +L+EAQRLEQR  +D+EM+  
Sbjct: 240 RLTIYPKTHYVTPREVLLQAVDEIKIELAERLEQLYGANKLVEAQRLEQRTRFDIEMILE 299

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR+L+ R PGE PPTLF+Y+P+++LL +DESHVT+PQ+  MYRGD  RK 
Sbjct: 300 LGYCTGIENYSRFLSRRQPGEAPPTLFDYLPKNALLVIDESHVTVPQLGAMYRGDRARKE 359

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL EYGFRLPS +DNRPL+FEEW  L P TI VSATPG +E +Q  G ++EQ++RPTGLV
Sbjct: 360 TLVEYGFRLPSALDNRPLKFEEWEQLAPQTIFVSATPGPYE-QQHSGAVIEQVVRPTGLV 418

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R A +QV+D+  EI        R+L+TVLTKRMAEDLT+YL +  +RVRY+HS+
Sbjct: 419 DPAVEVRPAGSQVDDLLSEIRQRTAADERVLVTVLTKRMAEDLTQYLEQHEVRVRYLHSD 478

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + T+ER+EIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTI
Sbjct: 479 IDTVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTI 538

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN++ + ILY D +T S+  AI ET RRR+KQL  N+ H I P+ +++ + E+ID 
Sbjct: 539 GRAARNLHGRAILYGDKVTGSMGRAIAETERRRKKQLAFNETHRIIPRGIQKAVREIIDG 598

Query: 736 ILLEDAATTNISID------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           +    +   + S D      A+   L  ++    L+ L +QMH  A NL FE+AAR+RDE
Sbjct: 599 VYTPGSGKGHRSPDRVEEKAAEYTRLPPQQLAKRLQQLERQMHKHAQNLEFEQAARLRDE 658

Query: 790 IKRLKSSPYFQGLDDS 805
           IKR+K    F G D +
Sbjct: 659 IKRIKGW-VFNGADSA 673


>gi|104780800|ref|YP_607298.1| excinuclease ABC subunit B [Pseudomonas entomophila L48]
 gi|95109787|emb|CAK14492.1| exonuclease ABC subunit B (ATP-dependent DNA excision repair enzyme
           UvrAC) [Pseudomonas entomophila L48]
          Length = 671

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/669 (56%), Positives = 488/669 (72%), Gaps = 22/669 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI Q+++GI +    Q LLGVTGSGKTF++A VI+ +QRP +V+A
Sbjct: 4   FQLVTRFQPAGDQPEAIRQMVEGIDAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTMVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLTDLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   R TFRV GD I+IFP+  +  A R+ +F +++E I+ F PLTG+ IR +     Y
Sbjct: 184 EMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A++ IKEELK RL  L    +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLVEAVEGIKEELKERLEYLNTHNKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTL++Y+P+D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPDDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG +E E   G +VEQ++RPTGLVDP VE
Sbjct: 364 GFRLPSALDNRPMRFDEWEAVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDPQVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI     QG R+L T LTKRMAEDLT+YL + ++RVRY+HS++ T+E
Sbjct: 423 VRPALTQVDDLLSEIGKRVAQGERVLATTLTKRMAEDLTDYLADHDVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD IT S+Q AIDET RRREKQ+  N  + I P+ V + I +++      +
Sbjct: 543 NLNGKAILYADNITGSMQRAIDETERRREKQIAFNAANGIVPKGVVKDITDIM------E 596

Query: 741 AATTNISIDAQQLSLSKKKGKA---------------HLKSLRKQMHLAADNLNFEEAAR 785
            AT   +   ++  ++K   +A                +K L ++M   A +L FE AA+
Sbjct: 597 GATVPGARSKKRKGMAKAAEEAGRYEVELQTPAQITKRIKQLEEKMFQFARDLEFEAAAQ 656

Query: 786 IRDEIKRLK 794
           +RDEI +L+
Sbjct: 657 LRDEIGQLR 665


>gi|326565749|gb|EGE15911.1| excinuclease ABC subunit B [Moraxella catarrhalis BC1]
 gi|326571086|gb|EGE21110.1| excinuclease ABC subunit B [Moraxella catarrhalis BC7]
 gi|326575727|gb|EGE25650.1| excinuclease ABC subunit B [Moraxella catarrhalis CO72]
          Length = 704

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/661 (57%), Positives = 481/661 (72%), Gaps = 9/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M TD+ PSGDQP AIA+L+KG+ +  + QLLLGVTGSGKT+TMAKVI    RPAI+MA
Sbjct: 41  FEMVTDFEPSGDQPKAIAELVKGVEADMRGQLLLGVTGSGKTYTMAKVIAECGRPAIIMA 100

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR 
Sbjct: 101 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPASDTFIEKDSAINDHIDQMRL 160

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G  ESY +M++ + +GD V +  ++  LV+ QY+R 
Sbjct: 161 SATRALLERRDAIIVASVSAIYGLGDPESYLKMLLHIVVGDRVHRDAVIKRLVELQYERN 220

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGT+R+ G++++I+P+  E +A R+ MF ++IE+I+ F PLTG+ I++V  I IY
Sbjct: 221 ELDFGRGTYRIRGETLDIYPAESESLAVRIQMFDDEIEKITWFDPLTGKNIKSVPRITIY 280

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  L  A   IKEEL  RL       + +EAQR+++R  YDLEM+   G C 
Sbjct: 281 PKSHYVTPKDKLEAASATIKEELAQRLEYFRANDKFIEAQRIKERTQYDLEMIGQLGYCN 340

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GE PPTLF+YIP D+LLF+DESHVT+PQI  MY+GD  RK TL +Y
Sbjct: 341 GIENYSRHLSGRPAGEAPPTLFDYIPSDALLFIDESHVTVPQIGAMYKGDKSRKETLVQY 400

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRP++FEEW  + P TI VSATP  +ELE+ +  +VEQ++RPTGLVDP +E
Sbjct: 401 GFRLPSAMDNRPMKFEEWEKISPATIFVSATPAQYELEKSEQ-VVEQVVRPTGLVDPILE 459

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EINL      R+L+T LTKRMAEDLT YL E  I+V Y+HS++ T+E
Sbjct: 460 IRPVLTQVDDILSEINLKKSLDERVLITTLTKRMAEDLTSYLKEYGIKVAYLHSDIDTVE 519

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G FDVLVGINLLREGLD+PE  LVAI DADKEGFLRS+ SLIQTIGRAAR
Sbjct: 520 RMKIIHELRTGIFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERSLIQTIGRAAR 579

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +VN K ILYADTIT S+Q AIDET RRR KQ+  N++H I P+S    I + ID    E 
Sbjct: 580 HVNGKAILYADTITPSMQKAIDETERRRAKQIAFNQEHGITPKSASRAITDKIDTGDDET 639

Query: 741 AATTNI-------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +    I        +D   L   K   K  +  L KQM   +  L FEEAA++RD +  L
Sbjct: 640 SEVVQIVLSQALAGVDENILHSPKLLAK-EIARLEKQMQALSRELKFEEAAKVRDTVIAL 698

Query: 794 K 794
           K
Sbjct: 699 K 699


>gi|81311790|sp|Q5GXX4|UVRB_XANOR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|58427410|gb|AAW76447.1| excinuclease ABC subunit B [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 688

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/669 (55%), Positives = 493/669 (73%), Gaps = 16/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 20  FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 79

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 80  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 139

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L IG+ ++Q++L+  L   QY R 
Sbjct: 140 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGEHIDQRQLIRHLTDLQYTRN 199

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 200 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 259

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 260 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 319

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 320 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 379

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G + E ++RPTGL+DP VE
Sbjct: 380 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTELVVRPTGLIDPVVE 439

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI+   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 440 IRPVGTQVDDLMSEIHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 499

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 500 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 559

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDE+ RRREKQ+E+N +H I P+SV+  I ++++    ED
Sbjct: 560 NLRGKAILYADKMTRSMQAAIDESDRRREKQVEYNLEHGITPESVERPISDIMEGA-RED 618

Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           AA                 + D + +  ++  GK  LKSL ++M+  A +L FE AA+IR
Sbjct: 619 AAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 676

Query: 788 DEIKRLKSS 796
           D+I++LK++
Sbjct: 677 DQIQKLKTA 685


>gi|122879246|ref|YP_201832.6| excinuclease ABC subunit B [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188577607|ref|YP_001914536.1| excinuclease ABC subunit B [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|238689561|sp|B2SUN1|UVRB_XANOP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|188522059|gb|ACD60004.1| excinuclease ABC, B subunit [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 673

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/669 (55%), Positives = 493/669 (73%), Gaps = 16/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L IG+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G + E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI+   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEIHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDE+ RRREKQ+E+N +H I P+SV+  I ++++    ED
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDESDRRREKQVEYNLEHGITPESVERPISDIMEGA-RED 603

Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           AA                 + D + +  ++  GK  LKSL ++M+  A +L FE AA+IR
Sbjct: 604 AAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661

Query: 788 DEIKRLKSS 796
           D+I++LK++
Sbjct: 662 DQIQKLKTA 670


>gi|148262374|ref|YP_001229080.1| excinuclease ABC subunit B [Geobacter uraniireducens Rf4]
 gi|146395874|gb|ABQ24507.1| excinuclease ABC, B subunit [Geobacter uraniireducens Rf4]
          Length = 664

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/654 (55%), Positives = 488/654 (74%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AI +L +G+   ++ Q+LLGVTGSGKTFTMA VI  + RPA+++A
Sbjct: 4   FKLNSDYQPRGDQPQAIGELSEGVERGDRDQVLLGVTGSGKTFTMANVIARVNRPALILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK  FP NAVE+FVSYYDYYQPEAY+P TDT+IEK+SSIN++ID+MRH
Sbjct: 64  PNKTLAAQLYGEFKELFPQNAVEFFVSYYDYYQPEAYLPTTDTFIEKDSSINDEIDKMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL R+D I+V+SVSCIYGIGS  +Y +M +    GD+V + ELL  LV+ QY+R 
Sbjct: 124 SATRSLLTRSDVIIVASVSCIYGIGSPAAYQEMHIFFHQGDNVGRDELLKRLVETQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+H ++ A R+  FG+ ++ ISE  PL GQ I+ +    IY
Sbjct: 184 DIDFHRGTFRVRGDIVEIFPAHDDERALRIEFFGDTVDAISEIDPLRGQVIQKLSKCAIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  + TL  A++ I+ EL+ R+    +   L+EAQR+EQR  +D+EM+E  G CQ
Sbjct: 244 PASHYVANKETLERAIEQIRLELEERIRWFRERNMLIEAQRIEQRTFFDIEMMEEMGFCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GR+ GEPP TL +Y P+D LLFVDESH+T+ Q+ GMYRGD  RK TL  Y
Sbjct: 304 GIENYSRHFDGRSAGEPPYTLLDYFPKDYLLFVDESHITVSQVGGMYRGDRSRKETLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       + VSATP  +EL    G++VEQ+IRPTGL+DP +E
Sbjct: 364 GFRLPSALDNRPLNFQEFTEKLNQVVYVSATPAEYELNIAGGVVVEQVIRPTGLIDPEIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D+  E+ L   +G R+L+T LTKRMAEDLT+Y  E  +RV+Y+HS++ T++
Sbjct: 424 VRPASGQVDDLLHEVRLTVTKGERVLVTTLTKRMAEDLTDYYRELGVRVKYLHSDIDTIQ 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT GRAAR
Sbjct: 484 RMQIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTCGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  +VI+YAD++T+S+Q  +DET+RRR+ Q E+N+KH+I PQS+K+++  +++ +   D
Sbjct: 544 NLAGRVIMYADSVTRSMQACMDETSRRRKIQSEYNRKHHITPQSIKKEVRTILESVEEHD 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             T  ++ ++ +   + K     +K LRK+M  AA  L+FE+AA +RD IK+L+
Sbjct: 604 YYTVPLAAESMEEYAAVKDIPKLVKKLRKEMLAAAKQLDFEKAAGLRDRIKKLE 657


>gi|296113147|ref|YP_003627085.1| excinuclease ABC subunit B [Moraxella catarrhalis RH4]
 gi|295920841|gb|ADG61192.1| excinuclease ABC subunit B [Moraxella catarrhalis RH4]
 gi|326560521|gb|EGE10903.1| excinuclease ABC subunit B [Moraxella catarrhalis 7169]
 gi|326564873|gb|EGE15077.1| excinuclease ABC subunit B [Moraxella catarrhalis 12P80B1]
 gi|326565389|gb|EGE15566.1| excinuclease ABC subunit B [Moraxella catarrhalis 103P14B1]
 gi|326570400|gb|EGE20440.1| excinuclease ABC subunit B [Moraxella catarrhalis BC8]
 gi|326573377|gb|EGE23345.1| excinuclease ABC subunit B [Moraxella catarrhalis 101P30B1]
 gi|326577192|gb|EGE27086.1| excinuclease ABC subunit B [Moraxella catarrhalis O35E]
          Length = 704

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/661 (57%), Positives = 481/661 (72%), Gaps = 9/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M TD+ PSGDQP AIA+L+KG+ +  + QLLLGVTGSGKT+TMAKVI    RPAI+MA
Sbjct: 41  FEMVTDFEPSGDQPKAIAELVKGVEADMRGQLLLGVTGSGKTYTMAKVIAECGRPAIIMA 100

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR 
Sbjct: 101 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPASDTFIEKDSAINDHIDQMRL 160

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G  ESY +M++ + +GD V +  ++  LV+ QY+R 
Sbjct: 161 SATRALLERRDAIIVASVSAIYGLGDPESYLKMLLHIVVGDRVHRDAVIKRLVELQYERN 220

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGT+R+ G++++I+P+  E +A R+ MF ++IE+I+ F PLTG+ I++V  I IY
Sbjct: 221 ELDFGRGTYRIRGETLDIYPAESESLAVRIQMFDDEIEKITWFDPLTGKNIKSVPRITIY 280

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  L  A   IKEEL  RL       + +EAQR+++R  YDLEM+   G C 
Sbjct: 281 PKSHYVTPKDKLEAASATIKEELAQRLEYFRANDKFIEAQRIKERTQYDLEMIGQLGYCN 340

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GE PPTLF+YIP D+LLF+DESHVT+PQI  MY+GD  RK TL +Y
Sbjct: 341 GIENYSRHLSGRPAGEAPPTLFDYIPSDALLFIDESHVTVPQIGAMYKGDKSRKETLVQY 400

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRP++FEEW  + P TI VSATP  +ELE+ +  +VEQ++RPTGLVDP +E
Sbjct: 401 GFRLPSAMDNRPMKFEEWEKISPATIFVSATPAQYELEKSEQ-VVEQVVRPTGLVDPILE 459

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EINL      R+L+T LTKRMAEDLT YL E  I+V Y+HS++ T+E
Sbjct: 460 IRPVLTQVDDILGEINLKKSLDERVLITTLTKRMAEDLTSYLKEYGIKVAYLHSDIDTVE 519

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G FDVLVGINLLREGLD+PE  LVAI DADKEGFLRS+ SLIQTIGRAAR
Sbjct: 520 RMKIIHELRTGIFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERSLIQTIGRAAR 579

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +VN K ILYADTIT S+Q AIDET RRR KQ+  N++H I P+S    I + ID    E 
Sbjct: 580 HVNGKAILYADTITPSMQKAIDETERRRAKQIAFNQEHGITPKSASRAITDKIDTGDDET 639

Query: 741 AATTNI-------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +    I        +D   L   K   K  +  L KQM   +  L FEEAA++RD +  L
Sbjct: 640 SEVVQIVLSQALAGVDENILHSPKLLAK-EIARLEKQMQALSRELKFEEAAKVRDTVIAL 698

Query: 794 K 794
           K
Sbjct: 699 K 699


>gi|71276421|ref|ZP_00652697.1| Excinuclease ABC, B subunit [Xylella fastidiosa Dixon]
 gi|71900500|ref|ZP_00682630.1| Excinuclease ABC, B subunit [Xylella fastidiosa Ann-1]
 gi|170730969|ref|YP_001776402.1| excinuclease ABC subunit B [Xylella fastidiosa M12]
 gi|238687942|sp|B0U4J3|UVRB_XYLFM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|71162737|gb|EAO12463.1| Excinuclease ABC, B subunit [Xylella fastidiosa Dixon]
 gi|71729740|gb|EAO31841.1| Excinuclease ABC, B subunit [Xylella fastidiosa Ann-1]
 gi|167965762|gb|ACA12772.1| excinuclease ABC subunit B [Xylella fastidiosa M12]
          Length = 669

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/663 (55%), Positives = 494/663 (74%), Gaps = 6/663 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ+ + Y PSGDQPAA+ +L+   H+    Q+LLGVTGSGKT+T+A V+E +Q+P +VM
Sbjct: 4   LFQLVSSYSPSGDQPAAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR
Sbjct: 64  APNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +AT++LL R+D +VV++VS IYG+G+ E Y  + + L +G+ +EQ++L+  L + QY R
Sbjct: 124 LAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLILSLGEHIEQRQLIRHLTELQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++ ++RG+FRV G+ +++FP+  E  A R+ +F  +IE +S F PLTGQ +R ++   +
Sbjct: 184 NELDLVRGSFRVRGEVVDVFPAESEMEALRIELFDGEIESLSLFDPLTGQTVRKLQRFSV 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HY T R    +A+  IK+ELK  L  L    +L+EAQRL QR  +DLEM+   G C
Sbjct: 244 YPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  M++GD  RK TL E
Sbjct: 304 NGIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEEW    P +I VSATPGS+E  +  G ++E ++RPTGL+DP +
Sbjct: 364 FGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYEFRESAGEVIELLVRPTGLIDPEI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR   TQV+D+  +IN   + G R+L+T LTKRMAE+LTEYL E+ IR+RY+HSE+ T+
Sbjct: 424 EIRPVATQVDDLISQINACIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEIDTV 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS +SLIQTIGRAA
Sbjct: 484 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----DP 735
           R+V  + ILYAD +T+S++ AIDET RRR+KQ E+N ++ I P+SV   I +++    D 
Sbjct: 544 RSVRGRAILYADKVTRSMRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDG 603

Query: 736 ILLEDAATTN--ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           + ++          + A   +L++ +  A +K L +QM+  A +L FE+AARIRD+I+RL
Sbjct: 604 VEVKSKGKGRRVDEVPADYGALNQAEIAAQMKMLEQQMYQHARDLEFEDAARIRDQIQRL 663

Query: 794 KSS 796
           + +
Sbjct: 664 REA 666


>gi|21243355|ref|NP_642937.1| excinuclease ABC subunit B [Xanthomonas axonopodis pv. citri str.
           306]
 gi|23822294|sp|Q8PJB1|UVRB_XANAC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|21108901|gb|AAM37473.1| excinuclease ABC subunit B [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 673

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/669 (55%), Positives = 493/669 (73%), Gaps = 16/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +QRP +VMA
Sbjct: 5   FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQRPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L +G+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +E+ +  G + E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYEVRESAGEVTELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E++   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV+  I ++++    +D
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPIADIMEGA-RDD 603

Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           AA                 + D + +  ++  GK  LKSL ++M+  A +L FE AA+IR
Sbjct: 604 AAEKKSGKGRSKSRHVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661

Query: 788 DEIKRLKSS 796
           D+I++LK++
Sbjct: 662 DQIQKLKAA 670


>gi|269467817|gb|EEZ79569.1| excinuclease ABC subunit B [uncultured SUP05 cluster bacterium]
          Length = 663

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/658 (56%), Positives = 492/658 (74%), Gaps = 1/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++ + P+GDQP AI  L+ G+++ EK Q LLGVTGSGKTFT+A VI+  +R +++MA
Sbjct: 5   FQLESQFSPTGDQPQAIKALVDGVNAGEKFQTLLGVTGSGKTFTLANVIKQTKRASLIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSE K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK+SSINEQI++MR 
Sbjct: 65  PNKTLAAQLYSEMKEFFPHNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINEQIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER+D I+++SVS IYG+G  +SY QM++ L +G+   Q+E+LS L + QY R 
Sbjct: 125 SATKSLLERDDVIIIASVSAIYGLGDPDSYMQMLLHLSVGEVTNQREILSRLSQMQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ ++RG FRV G+ I+IFP+  E+ A R+ MF ++IE I  F PLTG+K+++++ I IY
Sbjct: 185 DVTLMRGHFRVKGEVIDIFPADSEEQAIRIEMFDDEIEAIYWFDPLTGEKLKSLQRITIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTP+  +   +  IK ELK+R  EL    +L+E QRL QR+  D+EM+   G C 
Sbjct: 245 PQTHYVTPKSKILNTLDDIKAELKVRRKELLSLNKLVEEQRLTQRVKMDIEMMRELGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GE PPTL +Y+P+++L+ +DESHVT+ QI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRKSGEAPPTLMDYLPDNALVILDESHVTVSQIGGMYKGDRARKTTLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+       I+VSATP ++ELE    +I EQ++RPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLKFNEFEDRAHQCILVSATPAAYELE-VSNVIAEQVVRPTGLLDPEID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI+   + G R+L+T LTKRM+E L++YL +  ++VRY+HS++ T+E
Sbjct: 424 IRPVDTQVDDLLSEIHKCVKVGERVLVTTLTKRMSEQLSDYLNDHGVKVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN + ILYAD IT S+Q A+DET+RRR+KQ  +NKKHNI P+ V + I+ ++D  +   
Sbjct: 544 NVNGRAILYADRITGSMQRAMDETSRRRKKQEAYNKKHNITPRGVVKPIINILDTDITSQ 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
               N+  +  Q  LS  +    +K+L KQM+  A  L FE+AA +R++IK LK   +
Sbjct: 604 EDDDNMVNENIQRQLSPVQLVKEIKALEKQMYTFAGELKFEKAADVRNQIKLLKDGQF 661


>gi|90021398|ref|YP_527225.1| excinuclease ABC subunit B [Saccharophagus degradans 2-40]
 gi|89950998|gb|ABD81013.1| Excinuclease ABC subunit B [Saccharophagus degradans 2-40]
          Length = 666

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/662 (56%), Positives = 488/662 (73%), Gaps = 7/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++++ Y P+GDQP AI  L+KGI +    Q LLGVTGSGKTFT+A VIE + RP +VM
Sbjct: 4   LFKVKSKYTPAGDQPTAIEGLVKGIEAGLAHQTLLGVTGSGKTFTIANVIERIDRPTLVM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVP +DT+I+K++S+N+ I++MR
Sbjct: 64  AHNKTLAAQLYGEFKDFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIDKDASVNDHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D IVV++VS IYG+G  ESY +MI+ L  GD+++Q+++L  L + QY R
Sbjct: 124 LSATKALMERKDAIVVATVSAIYGLGDPESYLKMILHLNRGDTIDQRQILRRLAEMQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGT+RV GD I+IFP+  E  A RV +F  +++ +S F PLTG+  R V    +
Sbjct: 184 NDIDFQRGTYRVRGDVIDIFPADSELEALRVELFDEEVDNLSIFDPLTGEVFRKVPRFTV 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  SHYVTPR  +  A+  IKEEL  RL +L +  +L+EAQRLEQR  YDLEM++  G C
Sbjct: 244 YPKSHYVTPRNKIIDAIDEIKEELAERLQQLRENDKLVEAQRLEQRTRYDLEMMQELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P ++LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 304 NGIENYSRYLSGRDSGEPPPTLFDYLPAEALLVIDESHVTVPQIGAMYKGDRSRKETLVE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP+RF+EW    P  I VSATPG +E E  QG +VEQ++RPTGL+DP +
Sbjct: 364 YGFRLPSALDNRPMRFDEWEARAPQMIFVSATPGKYEAEH-QGQVVEQVVRPTGLLDPII 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R A +QV+D   EI        R+L+TVLTKRMAEDLT+YL E  +RVRY+HS++ T+
Sbjct: 423 EVRPATSQVDDAMSEITKRVALEERVLITVLTKRMAEDLTDYLQEHGVRVRYLHSDIDTV 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLR+G+FDVLVGINLLREGLD+PE  LVAI DADKEGFLRS  SLIQTIGRAA
Sbjct: 483 ERVEIIRDLRIGEFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSDRSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K ILYA+ IT S++ AIDET RRR+KQ++HN+KH I P  + + I ++++     
Sbjct: 543 RNVNGKAILYAERITDSMRRAIDETERRRQKQIDHNEKHGITPIGITKSIADIMEGARAP 602

Query: 740 DAATTN---ISIDAQQLSLSKKKGKAHLKSLR---KQMHLAADNLNFEEAARIRDEIKRL 793
            + +++   ++   +   +     K   K+++   K M  AA +L FE+AA++RD+I  L
Sbjct: 603 GSKSSSRKRVADKTKDYEVDMNSSKDIWKTIQVMEKDMFQAAKDLEFEKAAQLRDKINSL 662

Query: 794 KS 795
           K+
Sbjct: 663 KA 664


>gi|254515031|ref|ZP_05127092.1| excinuclease ABC, B subunit [gamma proteobacterium NOR5-3]
 gi|219677274|gb|EED33639.1| excinuclease ABC, B subunit [gamma proteobacterium NOR5-3]
          Length = 672

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/668 (55%), Positives = 484/668 (72%), Gaps = 10/668 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI  L++GIH+    Q LLGVTGSGKTFTMA VIE +QRP IVMA
Sbjct: 5   FKVNSPFKPAGDQPMAIKALVEGIHAGLAAQTLLGVTGSGKTFTMAHVIEQLQRPTIVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDY+QPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYFQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER DCIVV++VS IYG+G  +SY +M++ +  G+ ++Q++LL  L + QY R 
Sbjct: 125 SATKALLERKDCIVVATVSAIYGLGDPKSYFKMVMHVSRGEIIDQRQLLRHLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGT+RV GD I++FP+  E  A R+ +F  ++E IS F PLTG  I  V  I IY
Sbjct: 185 DIDFSRGTYRVRGDVIDVFPAEAEAEAVRIELFDEEVENISLFDPLTGVIIAKVPRITIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVT R T+  A+++I+ EL+ R+ +L+   +L+EAQRL QR  YD+EM+   G CQ
Sbjct: 245 PKTHYVTSRDTMLNAIEHIEVELEERVKQLKSVEKLVEAQRLSQRTRYDIEMIRELGYCQ 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSRYL+GR PGE PPTL+EY+P+D+L+ +DESH +IPQI  MY+GD  RK TL EY
Sbjct: 305 GVENYSRYLSGRGPGEAPPTLYEYLPDDALVIIDESHASIPQIGAMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW  L P  + VSATPG +E E   G +VEQ++RPTGL DP +E
Sbjct: 365 GFRLPSALDNRPLRFEEWENLLPQAVFVSATPGPYEAEHA-GQVVEQVVRPTGLTDPEIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+++  EI+   + G R+L+T LTKRM+EDLTEYL E ++RVRY+HS++ T+E
Sbjct: 424 IRPATTQVDNLLGEIHKTVEMGDRVLVTTLTKRMSEDLTEYLAEHDVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR AR
Sbjct: 484 RVEIIRDLRLGHFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSDRSLIQTIGRGAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-----P 735
           N+  + ILYAD IT S+Q AIDET RRR+KQ+  N+ +NI P  V + + ++++     P
Sbjct: 544 NLRGRAILYADKITGSMQRAIDETDRRRKKQVAFNEANNITPVGVIKSVQDIMEGARRMP 603

Query: 736 ILL----EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                  +  A   ++   + L LS       L  +  QMH  A NL FE+AA +RD++ 
Sbjct: 604 TKAKSKGQKVAEETLAFSQELLKLSPTALARRLDKMESQMHEHAKNLEFEQAAALRDQLT 663

Query: 792 RLKSSPYF 799
            +K   + 
Sbjct: 664 EIKQQAFI 671


>gi|307261128|ref|ZP_07542805.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306869158|gb|EFN00958.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 673

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/661 (56%), Positives = 490/661 (74%), Gaps = 6/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 8   FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR 
Sbjct: 68  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  ++Q+E+L+ L + QY R 
Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAELQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+  +++A RV +F ++IE +S F PLTG  +  V    IY
Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKVPRYTIY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 248 PKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL +Y
Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPVDGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPGS+ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGSYELEKSNGDVVDQVVRPTGLLDPIIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS++ T+E
Sbjct: 428 VRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 488 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D    + 
Sbjct: 548 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGITPQALNKKVGELLDIGQTDK 607

Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 ++  ++ S       S+K+ +  LK L +QM   A +L FE+AA +RD+I +LK
Sbjct: 608 PKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAAVRDKIGQLK 667

Query: 795 S 795
           +
Sbjct: 668 A 668


>gi|190149976|ref|YP_001968501.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263304|ref|ZP_07544922.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|189915107|gb|ACE61359.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871366|gb|EFN03092.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 673

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/661 (56%), Positives = 491/661 (74%), Gaps = 6/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 8   FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR 
Sbjct: 68  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  ++Q+E+L+ L + QY R 
Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAELQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+  +++A RV +F ++IE +S F PLTG  +  V    IY
Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKVPRYTIY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 248 PKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL +Y
Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGLLDPIIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS++ T+E
Sbjct: 428 VRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 488 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S+Q AI ET RRREKQ ++N++H+I PQ++ +K+ E++D    + 
Sbjct: 548 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHSITPQALNKKVGELLDIGQTDK 607

Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 ++  ++ S       S+K+ +  LK L +QM   A +L FE+AA +RD+I +LK
Sbjct: 608 PKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAAVRDKIGQLK 667

Query: 795 S 795
           +
Sbjct: 668 A 668


>gi|166712575|ref|ZP_02243782.1| excinuclease ABC subunit B [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 673

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/669 (55%), Positives = 493/669 (73%), Gaps = 16/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L +G+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G + E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI+   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEIHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDE+ RRREKQ+E+N +H I P+SV+  I ++++    ED
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDESDRRREKQVEYNLEHGITPESVERPISDIMEGA-RED 603

Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           AA                 + D + +  ++  GK  LKSL ++M+  A +L FE AA+IR
Sbjct: 604 AAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661

Query: 788 DEIKRLKSS 796
           D+I++LK++
Sbjct: 662 DQIQKLKTA 670


>gi|285018639|ref|YP_003376350.1| excinuclease ABC subunit b protein [Xanthomonas albilineans GPE
           PC73]
 gi|283473857|emb|CBA16359.1| probable excinuclease abc subunit b protein [Xanthomonas
           albilineans]
          Length = 672

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/664 (55%), Positives = 488/664 (73%), Gaps = 8/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AI +L+ G  +    Q LLGVTGSGKT+T+A V++A+Q+P +VMA
Sbjct: 5   FQLVSPYSPAGDQPQAIEKLVAGFEAGLAKQTLLGVTGSGKTYTIANVVQAIQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKAFFPSNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++LL R D +VV++VS IYG+G+ E Y  + + L IG+ +EQ++L+  L   QY R 
Sbjct: 125 AATKTLLSRRDALVVATVSAIYGLGAPEDYLSLRLILSIGEHIEQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG+FRV G+ I++FP+  +  A R+ +F  D+E+++ F PLTG+ +R ++   IY
Sbjct: 185 EYELHRGSFRVRGEVIDVFPAESDSEALRIELFDGDVEQLALFDPLTGETLRKLQRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IK ELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKLELKQRLEQLYAQNKLVEAQRLAQRTQFDLEMMAEVGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+  GEPPPTLF+Y+P D+LL VDESHVT+PQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAAGEPPPTLFDYLPPDALLVVDESHVTVPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G + E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTELVVRPTGLIDPQVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  +INL    G R+L+T LTKRMAE+LTEYL E  ++VRY+HS++ T+E
Sbjct: 425 IRPVATQVDDLLSQINLRVADGDRVLVTTLTKRMAENLTEYLGEHGVKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N  H I P+SV   I+++++      
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETGRRREKQVEYNLAHGITPKSVARPIVDILEGARESA 604

Query: 741 AATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           A   +    A+++        +L   +  A LK+L ++M+  A +L FE+AAR+RD++K+
Sbjct: 605 AEAKSGKGKARRVTEEPADYRALEPAEIAARLKALEQKMYQHARDLEFEDAARVRDQMKK 664

Query: 793 LKSS 796
           L+ +
Sbjct: 665 LRDT 668


>gi|165976082|ref|YP_001651675.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|165876183|gb|ABY69231.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 673

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/661 (56%), Positives = 490/661 (74%), Gaps = 6/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 8   FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR 
Sbjct: 68  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  ++Q+E+L+ L + QY R 
Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAELQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+  +++A RV +F ++IE +S F PLTG  +  V    IY
Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKVPRYTIY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 248 PKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL +Y
Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGLLDPIIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS++ T+E
Sbjct: 428 VRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 488 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D    + 
Sbjct: 548 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGITPQALNKKVGELLDIGQTDK 607

Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 ++  ++ S       S+K+ +  LK L +QM   A +L FE+AA +RD+I +LK
Sbjct: 608 PKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAAVRDKIGQLK 667

Query: 795 S 795
           +
Sbjct: 668 A 668


>gi|325924713|ref|ZP_08186151.1| Excinuclease ABC subunit B [Xanthomonas perforans 91-118]
 gi|325544919|gb|EGD16264.1| Excinuclease ABC subunit B [Xanthomonas perforans 91-118]
          Length = 673

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/669 (55%), Positives = 493/669 (73%), Gaps = 16/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FQLVSPYSPAGDQPAAIDKLVTNFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L +G+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYAQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +E+ +  G + E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYEVRESAGEVTELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E++   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD IT+S+Q AIDET RRREKQ+E+N +H I P+SV+  I ++++    +D
Sbjct: 545 NLRGKAILYADKITRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPIADIMEGA-RDD 603

Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           AA                 + D + +  ++  GK  LKSL ++M+  A +L FE AA+IR
Sbjct: 604 AAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661

Query: 788 DEIKRLKSS 796
           D+I++LK++
Sbjct: 662 DQIQKLKAA 670


>gi|149927877|ref|ZP_01916128.1| excinuclease ABC subunit B [Limnobacter sp. MED105]
 gi|149823499|gb|EDM82730.1| excinuclease ABC subunit B [Limnobacter sp. MED105]
          Length = 687

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/655 (57%), Positives = 488/655 (74%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQP AI +L++G++  E  Q LLGVTGSGKTFTMA VI    RPA+V+A
Sbjct: 13  FELYQPYSPAGDQPTAIEKLVEGVNDGEVFQTLLGVTGSGKTFTMANVIAQTGRPALVLA 72

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++MR 
Sbjct: 73  PNKTLAAQLYAEMREFFPKNAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQMRL 132

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER D I+V +VSCIYGIG    Y  MI+ ++ GD + Q+++L  L+  QYKR 
Sbjct: 133 SATKSLLERRDTIIVGTVSCIYGIGDPSDYHAMILSIRHGDKLSQRDILKRLIAMQYKRN 192

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+I+++P+   ++A R+ +F ++I+ I  F PLTG+  + +    IY
Sbjct: 193 DLDFTRGTFRVRGDTIDVYPAEHSELAVRIDLFDDEIDGIQLFDPLTGKIRQKLPRFTIY 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A++ IKEEL+ +L    K G+L+EAQRLEQR  +DLEML   G C+
Sbjct: 253 PSSHYVTPRATVLRAIETIKEELREQLDFFVKTGKLVEAQRLEQRTRFDLEMLAELGFCK 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++G  PGEPPPTL +Y+P+D L+ +DESHVTI Q+ GMYRGD  RK TL  +
Sbjct: 313 GIENYSRHMSGAAPGEPPPTLIDYLPKDGLMIIDESHVTIGQLGGMYRGDRSRKETLVNF 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPLRFEE+      T+ VSATP ++E E   G +VEQ++RPTGL+DP +E
Sbjct: 373 GFRLPSAMDNRPLRFEEFESKMRQTVFVSATPSNYEKEHS-GQVVEQVVRPTGLIDPVIE 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI+   + G R+L+T LTKRMAEDLT+YL +  +RVRY+HS++ T+E
Sbjct: 432 VRPATTQVDDLLSEIHERTRAGDRVLVTTLTKRMAEDLTDYLSDNGVRVRYLHSDIDTVE 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 492 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD +T S++LAI ETTRRR KQ+E N ++ I P+ V ++I E+ID +   +
Sbjct: 552 NLNGKAILYADRVTNSMELAIGETTRRRNKQIEFNTENGITPRGVNKQIKELIDGVFDPN 611

Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A+    +  A +++ L +K+    +K L K M   A NL FE+AA+ RD++  LK
Sbjct: 612 ASKQRKADKAMEVAPLGEKQLAKEIKRLEKLMLDHAKNLEFEKAAQARDQLGLLK 666


>gi|330829445|ref|YP_004392397.1| excinuclease ABC subunit B [Aeromonas veronii B565]
 gi|328804581|gb|AEB49780.1| excinuclease ABC subunit B [Aeromonas veronii B565]
          Length = 670

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/666 (55%), Positives = 486/666 (72%), Gaps = 14/666 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ + + P+GDQP AIAQLL GI S    Q LLGVTGSGKTFTMA VI  + RP +++
Sbjct: 4   LFKLASQFQPAGDQPTAIAQLLDGIESGLAHQTLLGVTGSGKTFTMANVIATLNRPTMIL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR
Sbjct: 64  APNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASINDHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER D ++V+SVS IYG+G  ++Y  M++ LK+GD + Q+++L  L + QY R
Sbjct: 124 LSATKALLERRDVVIVASVSAIYGLGDPQAYLSMMLHLKVGDVINQRDILRRLAELQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+   RGTFRV G+ I+I+P+  + +A RV +F  ++E +S+F PLTG   + V    I
Sbjct: 184 NDMAFQRGTFRVRGEVIDIYPAESDKLALRVELFDEEVERLSQFDPLTGAIEQTVVRYTI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HY TPR T+  A+++IKEEL+ R  +L    +L+E QR+ QR  +D+EM++  G C
Sbjct: 244 YPKTHYATPRETILGAIEHIKEELRSRREQLLSLNKLVEEQRISQRTQFDMEMMQELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 304 SGIENYSRYLSGRAPGEPPPTLFDYLPGDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+F+E+  L P T+ VSATPG +ELE+  G +V+Q++RPTGL+DP +
Sbjct: 364 YGFRLPSALDNRPLKFDEFEALMPQTVFVSATPGPYELEKSGGDVVQQVVRPTGLLDPEI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI        R+L+T LTKRMAEDLTEYL E +++VRY+HS++ T+
Sbjct: 424 EVRPVTTQVDDLLSEIRKRVAVEERVLVTTLTKRMAEDLTEYLAEHDVKVRYLHSDIDTV 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAA
Sbjct: 484 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N KVILY DTIT S+++AI+ET RRR  Q  HN KH I P+ + + I +V+D     
Sbjct: 544 RNLNGKVILYGDTITNSMKVAIEETERRRALQHAHNLKHGITPKGLNKSIGDVMD----M 599

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKS----------LRKQMHLAADNLNFEEAARIRDE 789
             + T           ++ +G+ H++S          + +QM   A +L FE+AA +RD+
Sbjct: 600 GGSRTAGKPGKGMRKAAEPQGEYHVRSASEIAKEIKRMEEQMFQHARDLEFEQAAALRDQ 659

Query: 790 IKRLKS 795
           I++L+S
Sbjct: 660 IQQLRS 665


>gi|331007859|ref|ZP_08330951.1| Excinuclease ABC subunit B [gamma proteobacterium IMCC1989]
 gi|330418330|gb|EGG92904.1| Excinuclease ABC subunit B [gamma proteobacterium IMCC1989]
          Length = 666

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/664 (56%), Positives = 493/664 (74%), Gaps = 16/664 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +DY P+GDQP AI  L+KGI +    Q LLGVTGSGKTFT+A V++ + RP IVM 
Sbjct: 5   FNVVSDYTPAGDQPKAIESLIKGIRNGLAHQTLLGVTGSGKTFTIANVVQEINRPTIVMV 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D I+V++VS IYG+G  E+Y +M++ +  G+ V+Q+++L  L + QY R 
Sbjct: 125 SATKALMERTDTIIVATVSAIYGLGDPEAYLKMVLHIDRGEKVDQRDILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R T+RV GD I++FP+  +  A R+ +F +++E+++ F PLTG+ ++ +    IY
Sbjct: 185 DAVFQRATYRVRGDVIDVFPADSDREALRIELFDDEVEQLTLFDPLTGESLQKMPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  +  A+++IK E K RL +L    +L+EAQRLEQR+ YD+EM++  G C 
Sbjct: 245 PKSHYVTPRSRILEAIEHIKAEAKERLEQLRSVNKLVEAQRLEQRVKYDVEMMQELGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSRYL+GR+PG PPPTLF+Y+P D+LL +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 305 GVENYSRYLSGRDPGLPPPTLFDYLPPDALLVLDESHVTVPQIGGMYRGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEEW  L P  I VSATPG++E E     IVEQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEWEELAPQMIFVSATPGNYEAEHA-AQIVEQVVRPTGLIDPVIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IRSA TQV++   EI        RIL+TVLTKRMAEDLT+YL +  +RVRY+HS++ T+E
Sbjct: 424 IRSADTQVDEAMSEIAKRVAVDERILITVLTKRMAEDLTDYLSDHGVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LV I+DADKEGFLRS  SLIQTIGRAAR
Sbjct: 484 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVMIMDADKEGFLRSDRSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           ++N K IL+A+ IT S+Q AIDET RRR KQ+ HNK+H I P  VK+KI ++++  ++  
Sbjct: 544 HLNGKAILFANKITNSMQRAIDETDRRRTKQVAHNKEHGITPTGVKKKIADIMEGAVVVG 603

Query: 739 --------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                   E  A+ N+  + +  SL +K     +  L ++M+ AA +L+FE AA +RD+I
Sbjct: 604 KGKRGKISEKEASYNLHPELEGKSLKQK-----IALLDEKMYQAAKDLDFERAASLRDQI 658

Query: 791 KRLK 794
           K+LK
Sbjct: 659 KQLK 662


>gi|187927971|ref|YP_001898458.1| excinuclease ABC subunit B [Ralstonia pickettii 12J]
 gi|187724861|gb|ACD26026.1| excinuclease ABC, B subunit [Ralstonia pickettii 12J]
          Length = 696

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/683 (55%), Positives = 496/683 (72%), Gaps = 15/683 (2%)

Query: 121 KIWTPHRSWSINNHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGV 176
           ++ +PH      + SK +TF    FQ+   Y P+GDQP AI QL++ I      Q LLGV
Sbjct: 6   QVPSPH------DESKFVTFEGSPFQLYQPYPPAGDQPEAIRQLVENIGDGLSYQTLLGV 59

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           TGSGKTFTMA VI  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEA
Sbjct: 60  TGSGKTFTMANVIAQVGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEA 119

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           YVP+ D +IEK+SSINE I++MR SAT+SLLER D ++V++VS IYGIG+   Y QMI+ 
Sbjct: 120 YVPQRDLFIEKDSSINEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPSEYHQMILT 179

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L+ GD V Q+++++ L+  QY R +    RGTFRV GD+++IFP+   ++A R+ +F ++
Sbjct: 180 LRAGDKVSQRDVIARLIAMQYTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDE 239

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           +E +  F PLTG+  + +    +Y +SHYVTPR T+  A++ IK EL+ RL    KE +L
Sbjct: 240 VESLQLFDPLTGRVRQKIPRFTVYPSSHYVTPRETVLRAIETIKAELRERLDFFYKENKL 299

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           +EAQRLEQR  +DLEML+  G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DES
Sbjct: 300 VEAQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGSAPGEPPPTLVDYLPPDALMFLDES 359

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536
           HV I Q++GMY GD  RK TLAEYGFRLPS +DNRPL+F E+         VSATPG +E
Sbjct: 360 HVLIGQLNGMYNGDRARKETLAEYGFRLPSALDNRPLKFAEFETKMRQVTFVSATPGDYE 419

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
            +     +VEQ++RPTGLVDP +E+R A TQV+D+  EI++  + G R+L+T LTKRMAE
Sbjct: 420 KKTAGTEVVEQVVRPTGLVDPIIEVRPATTQVDDLLSEIHVRVEAGERVLVTTLTKRMAE 479

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            LTE+L E  ++VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAI
Sbjct: 480 QLTEFLSENGVKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAI 539

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
           LDADKEGFLR++ SLIQTIGRAARNVN   ILYAD +T S++ AI ET RRR KQ+ HN+
Sbjct: 540 LDADKEGFLRAERSLIQTIGRAARNVNGTAILYADRMTDSMKKAIGETERRRAKQIAHNE 599

Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMH 772
            H I P+ V ++I ++ID +   D A   +   AQ+ +    +S+K+    +K L KQM 
Sbjct: 600 AHGITPRGVVKRIKDIIDGVYNVDDARAELKA-AQEAAKYEDMSEKQASKEIKRLEKQML 658

Query: 773 LAADNLNFEEAARIRDEIKRLKS 795
             A NL FE+AA +RD++ +LKS
Sbjct: 659 DHAKNLEFEKAAAVRDQLAKLKS 681


>gi|170718533|ref|YP_001783742.1| excinuclease ABC subunit B [Haemophilus somnus 2336]
 gi|168826662|gb|ACA32033.1| excinuclease ABC, B subunit [Haemophilus somnus 2336]
          Length = 677

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/665 (57%), Positives = 488/665 (73%), Gaps = 14/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ P+GDQP AIA+L + ++     Q LLGVTGSGKTFT+A VI  + RPA+V+A
Sbjct: 9   FILHSDFQPAGDQPQAIAKLAENLNDGLAHQTLLGVTGSGKTFTIANVIAKLNRPAMVLA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 69  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY +M++ L+ G  V+Q+++L+ L + QY R 
Sbjct: 129 SATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQHGAIVDQRQILAKLAELQYTRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     +    IY
Sbjct: 189 DQVFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGANFGAIPRYTIY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK EL+ R   L    RL+E QRL QR  +D+EM+   G C 
Sbjct: 249 PKTHYVTPRERILEAIEKIKLELQARREYLLANNRLVEEQRLTQRTQFDIEMMNELGYCS 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR+ GEPPPTLF+YIP D LL +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 309 GIENYSRYLSGRDEGEPPPTLFDYIPSDGLLIIDESHVTVPQIGGMYRGDRSRKETLVEY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+DP VE
Sbjct: 369 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGDEIIDQVVRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A+Q  R+L+T LTKRMAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 429 IRPVAIQVDDLLSEARKRAEQNERVLVTTLTKRMAEDLTDYLEEHGIRVRYLHSDIDTVE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 489 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD+ITKS+Q AIDET RRREKQ+++N +  + PQ++ +K+ E++D   +  
Sbjct: 549 NLNGKAILYADSITKSMQKAIDETHRRREKQMKYNAEKGVVPQALNKKVGELLD---IGQ 605

Query: 741 AATTNISIDAQQLSL-----------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            A T     A+  ++           S K  +  +K L +QM+  A +L FE+AA IRD+
Sbjct: 606 GAITKSKTKARAKTVAESSALYQKINSPKDYQQQVKKLEQQMYKFAQDLEFEKAAAIRDQ 665

Query: 790 IKRLK 794
           ++ LK
Sbjct: 666 LQELK 670


>gi|53729175|ref|ZP_00134015.2| COG0556: Helicase subunit of the DNA excision repair complex
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208147|ref|YP_001053372.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae L20]
 gi|189037973|sp|A3N031|UVRB_ACTP2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|126096939|gb|ABN73767.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 673

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/661 (56%), Positives = 490/661 (74%), Gaps = 6/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 8   FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR 
Sbjct: 68  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  ++Q+E+L+ L + QY R 
Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQLGAIIDQREILARLAELQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+  +++A RV +F ++IE +S F PLTG  +  V    IY
Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKVPRYTIY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 248 PKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL +Y
Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGLLDPIIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS++ T+E
Sbjct: 428 VRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 488 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D    + 
Sbjct: 548 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGITPQALNKKVGELLDIGQTDK 607

Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 ++  ++ S       S+K+ +  LK L +QM   A +L FE+AA +RD+I +LK
Sbjct: 608 PKRGKQAVKVEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAAVRDKIGQLK 667

Query: 795 S 795
           +
Sbjct: 668 A 668


>gi|307245520|ref|ZP_07527607.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307254476|ref|ZP_07536312.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258934|ref|ZP_07540665.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306853579|gb|EFM85797.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306862526|gb|EFM94484.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306866958|gb|EFM98815.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 673

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/661 (56%), Positives = 490/661 (74%), Gaps = 6/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 8   FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR 
Sbjct: 68  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  ++Q+E+L+ L + QY R 
Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAELQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+  +++A RV +F ++IE +S F PLTG  +  V    IY
Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKVPRYTIY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 248 PKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL +Y
Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGLLDPIIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS++ T+E
Sbjct: 428 VRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 488 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D    + 
Sbjct: 548 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGITPQALNKKVGELLDIGQTDK 607

Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 ++  ++ S       S+K+ +  LK L +QM   A +L FE+AA +RD+I +L+
Sbjct: 608 PKRGKQAVKVEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAEVRDKIGQLR 667

Query: 795 S 795
           +
Sbjct: 668 A 668


>gi|307256686|ref|ZP_07538465.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306864734|gb|EFM96638.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
          Length = 673

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/661 (56%), Positives = 490/661 (74%), Gaps = 6/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 8   FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR 
Sbjct: 68  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  ++Q+E+L+ L + QY R 
Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGALIDQREILARLAELQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+  +++A RV +F ++IE +S F PLTG  +  V    IY
Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKVPRYTIY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 248 PKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL +Y
Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGLLDPIIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS++ T+E
Sbjct: 428 VRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 488 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D    + 
Sbjct: 548 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGITPQALNKKVGELLDIGQTDK 607

Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 ++  ++ S       S+K+ +  LK L +QM   A +L FE+AA +RD+I +LK
Sbjct: 608 PKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAAVRDKIGQLK 667

Query: 795 S 795
           +
Sbjct: 668 T 668


>gi|198283103|ref|YP_002219424.1| excinuclease ABC subunit B [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667550|ref|YP_002425332.1| excinuclease ABC, B subunit [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198247624|gb|ACH83217.1| excinuclease ABC, B subunit [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519763|gb|ACK80349.1| excinuclease ABC, B subunit [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 675

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/659 (56%), Positives = 489/659 (74%), Gaps = 6/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ + P GDQP AI  L+ G+ + E  Q LLGVTGSGKTFTMA VI    RPAI+MA
Sbjct: 5   FILESSFPPQGDQPEAIRLLVNGLAAGEYFQTLLGVTGSGKTFTMANVIAITHRPAIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E + FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ I++MR 
Sbjct: 65  PNKTLAAQLYAEMRAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G   SY  MI+ L+   +++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERPDVIIVATVSAIYGLGDPASYHGMILHLRESSTMDQRAILKRLAEMQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            + + RGTFRV GD I+I+P+  ED A R+ +FG+++E IS F PLTG+ I  +    IY
Sbjct: 185 PLEMKRGTFRVNGDVIDIWPAESEDEAVRIELFGDELERISLFDPLTGKTITRLPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR T+  A+  IK+EL+ RL +L +  +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 245 PKSHYVTPRETILAALDAIKDELRARLEDLRRANKLVEAQRLEQRTRFDLEMMAELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PG+ PPTL +Y+P+D+LLF+DESHVT+PQ  GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRVPGQAPPTLMDYLPKDALLFMDESHVTVPQFGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+  L P T+ +SATPG +ELE   G +VEQ++RPTGLVDP V+
Sbjct: 365 GFRLPSALDNRPLTFPEFESLMPQTVFISATPGPYELEHS-GQVVEQVVRPTGLVDPAVD 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A+ QV+D+  EIN+  + G RIL+T LTKRMAEDLT+YL+E  I+ RY+HS+++T+E
Sbjct: 424 IRPAKGQVDDLISEINIVVRNGWRILVTTLTKRMAEDLTDYLHELGIKCRYLHSDIETVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RVEIIRDLRAGVFDVLIGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ + ILYAD+ITKS+  AI ET RRREKQL+ N  H I P+ + + + ++I+ +   +
Sbjct: 544 NLHGRAILYADSITKSMARAIAETDRRREKQLQFNAAHGITPRGIVKPVSDMIEGVYRRN 603

Query: 741 ----AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               A     + D + L   +   K  +K L + M+  A NL FE+AA +RD+IK+L++
Sbjct: 604 VQPAAHAAEKNADYRVLRDPQAVAK-KIKELEEAMYRHARNLEFEQAAALRDDIKKLET 661


>gi|78048368|ref|YP_364543.1| excinuclease ABC subunit B [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036798|emb|CAJ24491.1| excinuclease ABC subunit B [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 697

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/669 (55%), Positives = 493/669 (73%), Gaps = 16/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 29  FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 88

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 89  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 148

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L +G+ ++Q++L+  L   QY R 
Sbjct: 149 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 208

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 209 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 268

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 269 PKTHYATTRERTLSAVDTIKEELKERLEQLYAQNKLVEAQRLAQRTQFDLEMMAEVGFCN 328

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 329 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 388

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +E+ +  G + E ++RPTGL+DP VE
Sbjct: 389 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYEVRESAGEVTELVVRPTGLIDPVVE 448

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E++   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 449 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 508

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 509 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 568

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD IT+S+Q AIDET RRREKQ+E+N +H I P+SV+  I ++++    +D
Sbjct: 569 NLRGKAILYADKITRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPIADIMEGA-RDD 627

Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           AA                 + D + +  ++  GK  LKSL ++M+  A +L FE AA+IR
Sbjct: 628 AAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 685

Query: 788 DEIKRLKSS 796
           D+I++LK++
Sbjct: 686 DQIQKLKAA 694


>gi|15837569|ref|NP_298257.1| excinuclease ABC subunit B [Xylella fastidiosa 9a5c]
 gi|21542296|sp|Q9PER1|UVRB_XYLFA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|9105897|gb|AAF83777.1|AE003935_3 excinuclease ABC subunit B [Xylella fastidiosa 9a5c]
          Length = 669

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/663 (55%), Positives = 494/663 (74%), Gaps = 6/663 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ+ + Y PSGDQP A+ +L+   H+    Q+LLGVTGSGKT+T+A V+E +Q+P +VM
Sbjct: 4   LFQLVSSYSPSGDQPTAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR
Sbjct: 64  APNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +AT++LL R+D +VV++VS IYG+G+ E Y  + + L +G+ +EQ++L+  L + QY R
Sbjct: 124 LAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLILSLGEHIEQRQLIRHLTELQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++ ++RG+FRV G+ +++FP+  E  A R+ +F  +IE +S F PLTGQ +R ++   +
Sbjct: 184 NELDLVRGSFRVRGEVVDVFPAESEMEALRIELFDGEIESLSLFDPLTGQTVRKLQRYSV 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HY T R    +A+  IK+ELK  L  L    +L+EAQRL QR  +DLEM+   G C
Sbjct: 244 YPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  M++GD  RK TL E
Sbjct: 304 NGIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEEW    P +I VSATPGS+E  +  G ++E ++RPTGL+DP +
Sbjct: 364 FGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYEFRESAGEVIELLVRPTGLIDPEI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR   TQV+D+  +IN+  + G R+L+T LTKRMAE+LTEYL E+ IR+RY+HSE+ T+
Sbjct: 424 EIRPVATQVDDLISQINVCIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEIDTV 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS +SLIQTIGRAA
Sbjct: 484 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----DP 735
           R+V  + ILYAD +T+S++ AIDET RRR+KQ E+N ++ I P+SV   I +++    D 
Sbjct: 544 RSVRGRAILYADKVTRSMRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDG 603

Query: 736 ILLEDAATTN--ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           + ++          + A   +L++ +  A +K L +QM+  A +L FE+AARIRD+I+RL
Sbjct: 604 VEVKSKGKGRRVDEVPADYCALNQAEIAAQMKVLEQQMYQHARDLEFEDAARIRDQIQRL 663

Query: 794 KSS 796
           + +
Sbjct: 664 REA 666


>gi|294624228|ref|ZP_06702943.1| excinuclease ABC subunit B [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292601472|gb|EFF45494.1| excinuclease ABC subunit B [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 673

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/669 (55%), Positives = 493/669 (73%), Gaps = 16/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L +G+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +E+ +  G + E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYEVRESAGEVTELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E++   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV+  I ++++    +D
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPIADIMEGA-RDD 603

Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           AA                 + D + +  ++  GK  LKSL ++M+  A +L FE AA+IR
Sbjct: 604 AAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661

Query: 788 DEIKRLKSS 796
           D+I++LK++
Sbjct: 662 DQIQKLKAA 670


>gi|325919999|ref|ZP_08181978.1| Excinuclease ABC subunit B [Xanthomonas gardneri ATCC 19865]
 gi|325549510|gb|EGD20385.1| Excinuclease ABC subunit B [Xanthomonas gardneri ATCC 19865]
          Length = 673

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/669 (55%), Positives = 494/669 (73%), Gaps = 16/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A VI+ +Q+P +VMA
Sbjct: 5   FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVIQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L +G+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRKLIRHLSDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IK+ELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKDELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G I E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEITELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI+   + G R+L+T LTKRM+E+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEIHERIKLGDRVLVTTLTKRMSENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV+  I ++++    ED
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVQRPISDIMEGA-RED 603

Query: 741 AATTNI-------------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           AA                 ++D + +  ++  GK  LKSL ++M+  A +L FE AA+IR
Sbjct: 604 AAEKKAGKGRSKSRQIAEDTVDYRAMGPAQIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661

Query: 788 DEIKRLKSS 796
           D+I++LK++
Sbjct: 662 DQIQKLKAA 670


>gi|84624686|ref|YP_452058.1| excinuclease ABC subunit B [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|123521417|sp|Q2P0Z3|UVRB_XANOM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|84368626|dbj|BAE69784.1| excinuclease ABC subunit B [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 673

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/669 (55%), Positives = 492/669 (73%), Gaps = 16/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L IG+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQSKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G + E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  EI+   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGMQVDDLMSEIHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDE+ RRREKQ+E+N +H I P+SV+  I ++++    ED
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDESDRRREKQVEYNLEHGITPESVERPISDIMEGA-RED 603

Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           AA                 + D + +  ++  GK  LKSL ++M+  A +L FE AA+IR
Sbjct: 604 AAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661

Query: 788 DEIKRLKSS 796
           D+I++LK++
Sbjct: 662 DQIQKLKTA 670


>gi|28199607|ref|NP_779921.1| excinuclease ABC subunit B [Xylella fastidiosa Temecula1]
 gi|182682349|ref|YP_001830509.1| excinuclease ABC subunit B [Xylella fastidiosa M23]
 gi|32130270|sp|Q87AT6|UVRB_XYLFT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238691089|sp|B2I8F9|UVRB_XYLF2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|28057722|gb|AAO29570.1| excinuclease ABC subunit B [Xylella fastidiosa Temecula1]
 gi|182632459|gb|ACB93235.1| excinuclease ABC, B subunit [Xylella fastidiosa M23]
 gi|307578632|gb|ADN62601.1| excinuclease ABC subunit B [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 669

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/663 (55%), Positives = 494/663 (74%), Gaps = 6/663 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ+ + Y PSGDQPAA+ +L+   H+    Q+LLGVTGSGKT+T+A V+E +Q+P +VM
Sbjct: 4   LFQLVSSYSPSGDQPAAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR
Sbjct: 64  APNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +AT++LL R+D +VV++VS IYG+G+ E Y  + + L +G+ +EQ++L+  L + QY R
Sbjct: 124 LAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLILSLGEHIEQRQLIRHLTELQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++ ++RG+FRV G+ +++FP+  E  A R+ +F  +IE +S F PLTGQ +R ++   +
Sbjct: 184 NELDLVRGSFRVRGEVVDVFPAESEMEALRIELFDGEIESLSLFDPLTGQTVRKLQRFSV 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HY T R    +A+  IK+ELK  L  L    +L+EAQRL QR  +DLEM+   G C
Sbjct: 244 YPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  M++GD  RK TL E
Sbjct: 304 NGIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEEW    P +I VSATPGS+E  +  G ++E ++RPTGL+DP +
Sbjct: 364 FGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYEFRESAGEVIELLVRPTGLIDPEI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR   TQV+D+  +IN   + G R+L+T LTKRMAE+LTEYL E+ IR+RY+HSE+ T+
Sbjct: 424 EIRPVATQVDDLISQINACIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEIDTV 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS +SLIQTIGRAA
Sbjct: 484 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----DP 735
           R+V  + ILYAD +T+S++ AIDET RRR+KQ E+N ++ I P+SV   I +++    D 
Sbjct: 544 RSVRGRAILYADKVTRSMRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDG 603

Query: 736 ILLEDAATTN--ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           + ++          + A   +L++ +  A +K L ++M+  A +L FE+AARIRD+I+RL
Sbjct: 604 VEVKSKGKGRRVDEVPADYGALNQAEIAAQMKVLEQKMYQHARDLEFEDAARIRDQIQRL 663

Query: 794 KSS 796
           + +
Sbjct: 664 REA 666


>gi|332140736|ref|YP_004426474.1| excinuclease ABC subunit B [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550758|gb|AEA97476.1| excinuclease ABC subunit B [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 671

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/662 (55%), Positives = 491/662 (74%), Gaps = 10/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  L+ G+ S    Q LLGVTGSGKTFTMA VI+ +QRP +++A
Sbjct: 5   FELHSKYKPAGDQPKAIEALVDGLESGLAGQTLLGVTGSGKTFTMANVIKEVQRPTLILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++V+SVS IYG+G  ESY +M++ L+ GD+++Q+++L  L + QYKR 
Sbjct: 125 SATKALMERRDVVIVASVSAIYGLGDPESYMKMLLHLRQGDTMDQRDILRRLAELQYKRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD I+IFP+  E  A RV +F ++I++IS F PLTG   ++V    ++
Sbjct: 185 DLAFERGTFRVRGDVIDIFPADSEKQAVRVELFDDEIDKISLFDPLTGAVDKSVIRATVF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A+++IK+EL  R  +L++  +L+E QR+ QR  +D+EM+   G C 
Sbjct: 245 PKTHYVTPREKILNAIEHIKDELGGRKKQLQEANKLIEEQRISQRTQFDIEMMMELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTL +Y P D L+F+DESHVT+ Q+  MYRGD  RK TL E+
Sbjct: 305 GIENYSRYLSGRAPGEPPPTLLDYFPADGLMFIDESHVTVSQVGAMYRGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  + P TI VSATPG +EL + +G IVEQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEQICPQTIYVSATPGDYELRKTEGEIVEQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EI    +   R+L+T LTKRMAEDL+EYL E  ++VRY+HS++ T+E
Sbjct: 425 VRPVATQVDDVLSEIKKRVELDERVLITTLTKRMAEDLSEYLNEHGVKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 485 RIEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++N + ILYADTITKS++ A+DET RRREKQ+ HN+ +NI P  + + I +++D  L E 
Sbjct: 545 HINGRAILYADTITKSMKKAMDETERRREKQMAHNEANNITPMRLNKPITDIMD--LGES 602

Query: 741 AATTNISIDAQQLSLSKKKGKA--------HLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           A   +  +  +++   K K KA         +  L KQM   A  L FE+AA +RD+I+ 
Sbjct: 603 AHPASGKVRLRKVEEKKSKQKAASATELMDQITELEKQMFEYARELEFEKAASLRDDIEA 662

Query: 793 LK 794
           L+
Sbjct: 663 LR 664


>gi|117621062|ref|YP_856963.1| excinuclease ABC subunit B [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117562469|gb|ABK39417.1| excinuclease ABC, B subunit [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 670

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/666 (55%), Positives = 487/666 (73%), Gaps = 14/666 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ+ + + P+GDQP AIAQLL GI S    Q LLGVTGSGKTFTMA VI  + RP +++
Sbjct: 4   LFQLASQFQPAGDQPRAIAQLLDGIESGLAHQTLLGVTGSGKTFTMANVIATLNRPTMIL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K FFP N+VEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR
Sbjct: 64  APNKTLAAQLYGEMKEFFPDNSVEYFVSYYDYYQPEAYVPTTDTFIEKDASINDHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER D ++V+SVS IYG+G  ++Y  M++ LK+GD + Q+++L  L + QY R
Sbjct: 124 LSATKALLERRDVVIVASVSAIYGLGDPQAYLSMMLHLKVGDLINQRDILRRLAELQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+   RGTFRV G+ I+I+P+  + +A RV +F  ++E +S F PLTG   + V    I
Sbjct: 184 NDMAFQRGTFRVRGEVIDIYPAESDKLALRVELFDEEVERLSLFDPLTGAIEQTVVRYTI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HY TPR T+  A+++IKEELK R  +L   G+L+E QR+ QR  +D+EM++  G C
Sbjct: 244 YPKTHYATPRETILGAIEHIKEELKSRREQLLSLGKLVEEQRISQRTQFDIEMMQELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 304 SGIENYSRYLSGRAPGEPPPTLFDYLPGDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+F+E+  L P T+ VSATPG +ELE+  G +V+Q++RPTGL+DP +
Sbjct: 364 YGFRLPSALDNRPLKFDEFEALMPQTVFVSATPGPYELEKSGGDVVQQVVRPTGLLDPEI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI        R+L+T LTKRMAEDLTEYL +  +RVRY+HS++ T+
Sbjct: 424 EVRPVTTQVDDLLSEIRKRVAVEERVLVTTLTKRMAEDLTEYLADHEVRVRYLHSDIDTV 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAA
Sbjct: 484 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N KVILY DTIT S+Q+AI+ET RRR  Q  HN +H I P  + + + +V+D   + 
Sbjct: 544 RNLNGKVILYGDTITNSMQVAIEETERRRALQHAHNLEHGITPTGLNKSVGDVMD---MG 600

Query: 740 DAATTNISIDAQQLSLSKKKGKAH----------LKSLRKQMHLAADNLNFEEAARIRDE 789
            + +   S    + + ++ +G+ H          +K + +QM   A +L FE+AA +RD+
Sbjct: 601 GSRSAGKSGRGSRKA-AEPQGEYHARSASEISKEIKRMEEQMFQHARDLEFEQAAALRDQ 659

Query: 790 IKRLKS 795
           I+RL++
Sbjct: 660 IQRLRN 665


>gi|251792934|ref|YP_003007660.1| excinuclease ABC subunit B [Aggregatibacter aphrophilus NJ8700]
 gi|247534327|gb|ACS97573.1| hypothetical protein NT05HA_1213 [Aggregatibacter aphrophilus
           NJ8700]
          Length = 697

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/673 (55%), Positives = 490/673 (72%), Gaps = 15/673 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D++PSGDQP AIA+L + +      Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 27  FILHSDFNPSGDQPQAIAKLAENLEDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 86

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 87  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 146

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  + Q+++L+ L + QY R 
Sbjct: 147 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIINQRQILAKLAELQYTRN 206

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A R+ +F ++IE +S F PLTG     +    +Y
Sbjct: 207 DQAFQRGTFRVRGEIIDIFPAESDERAVRIELFDDEIERLSLFDPLTGSSFGTIPRFTVY 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 267 PKTHYVTPRERILDAIEKIKVELAQRREYFIKENKLLEEQRISQRTQFDIEMMNELGYCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 327 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+DP +E
Sbjct: 387 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLDPQIE 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 447 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 507 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD+ITKS++ AI ET RRREKQ ++N+ H I PQ++ +K+ E++D   +  
Sbjct: 567 NLNGKAILYADSITKSMEKAITETNRRREKQTKYNEVHGIVPQALNKKVGELLD---IGQ 623

Query: 741 AATTNISIDAQQ------------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            A   +  + Q+            L  S K+ +  +K L +QM+  A +L FE+AA +RD
Sbjct: 624 GANQKVKANKQRGKMVAEPTALYALPTSPKEYQQQIKKLEQQMYKFAQDLEFEKAAAVRD 683

Query: 789 EIKRLKSSPYFQG 801
           ++++L+ S    G
Sbjct: 684 QLQQLRESFMLSG 696


>gi|88797993|ref|ZP_01113580.1| excinuclease ABC subunit B [Reinekea sp. MED297]
 gi|88779190|gb|EAR10378.1| excinuclease ABC subunit B [Reinekea sp. MED297]
          Length = 674

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/661 (55%), Positives = 488/661 (73%), Gaps = 13/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI +L+ G+++    Q LLGVTGSGKT+TMAKV+EA+QRP IVM 
Sbjct: 4   FKVVSKYEPAGDQPAAITKLVDGLNAGLAAQTLLGVTGSGKTYTMAKVVEAVQRPTIVMV 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP +DT+I+K+SS+NE I++MR 
Sbjct: 64  HNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIDKDSSVNEHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V++VS IYG+GS +SY +M++ L+ GD ++Q+ +L  L   QY+R 
Sbjct: 124 SATKALLERRDTLIVATVSAIYGLGSPDSYLKMVLHLRKGDMIDQRGILRQLADLQYQRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGT+RV GD ++IFP+  E  A RV +F ++IE++S F PLTG+ ++ +    IY
Sbjct: 184 DTDFGRGTYRVRGDILDIFPAESELEAIRVELFDDEIEKLSLFDPLTGEVLQKLNRYTIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR T+  A + I+ ELK RL   E + RL+EAQRLEQR  YDLEM+   G C 
Sbjct: 244 PKTHYVTPRETILNACEQIEVELKDRLKVFESDNRLVEAQRLEQRTRYDLEMMRELGFCT 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L+G  PGE PPTL+ Y+P D+L+F+DESHV+IPQI  MY+GD  RK TL EY
Sbjct: 304 GVENYSRFLSGAKPGEAPPTLYSYLPADTLMFIDESHVSIPQIGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW  + P ++ VSATPG +E E  Q   V+Q++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPLKFEEWERMAPQSVYVSATPGKYEAEHSQQ-TVDQVVRPTGLVDPIIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+DV +EI L  +   R+L+T LTKRMAEDLT+YL++  IRVRY+HS++ T+E
Sbjct: 423 VRPATTQVDDVLEEIRLRVEVNERVLITTLTKRMAEDLTDYLHDNGIRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD +T S++ AI+ET RRREKQ+ HN  +NI PQ++ + + ++ID      
Sbjct: 543 NLNGKAILYADRMTGSMERAIEETERRREKQIAHNTANNITPQALNKAVTDIIDGTPQAP 602

Query: 741 AATTNISIDAQQ------------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                ++ + ++            + +S  +    +     +MH  A +L FEEAA +RD
Sbjct: 603 GRKGKLARNKKKVEHITGEEAKSFMQMSAAELSKEITRTEDRMHKLARDLKFEEAAGLRD 662

Query: 789 E 789
           +
Sbjct: 663 Q 663


>gi|120598965|ref|YP_963539.1| excinuclease ABC subunit B [Shewanella sp. W3-18-1]
 gi|120559058|gb|ABM24985.1| Excinuclease ABC subunit B [Shewanella sp. W3-18-1]
 gi|319426521|gb|ADV54595.1| excinuclease ABC, B subunit [Shewanella putrefaciens 200]
          Length = 668

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/660 (57%), Positives = 483/660 (73%), Gaps = 5/660 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ + P+GDQPAAI +L+ G+ S    Q LLGVTGSGKTFT+A VI  + RP I+
Sbjct: 4   SVFQLESQFAPAGDQPAAITKLVDGLESGLACQTLLGVTGSGKTFTIANVIAKLGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GDS+ Q+++L  L + QY 
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDSLGQRDMLKRLSELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGTFRV G+ I+IFP+  +  A RV +F ++IE +SEF PLTGQ I+ +    
Sbjct: 184 RNDIELQRGTFRVRGEVIDIFPADSDRYAIRVELFDDEIERLSEFDPLTGQIIKRIARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A + IKEEL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKTHYVTPREKILEATELIKEELRERKQYLLDNNKLIEAQRIHERVQYDVEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP  +ELE+ +G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPSLYELEKSEGEIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI        R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVATQVDDLLSEIAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD IT S+  AI ET RRREKQ  HN K+ I P+ V ++I +V+D    
Sbjct: 544 ARNVNGKVILYADRITNSMAKAIGETDRRREKQRAHNLKNGIVPKGVVKRITDVMDVDDG 603

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLK----SLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            D+      + A+  S   K   A L      L K+MH  A NL FE+AA +RDE+K L+
Sbjct: 604 RDSKAVYGKV-AEPKSHYHKADAAELSHQIDQLEKKMHEHARNLEFEQAAAMRDEVKHLR 662


>gi|126090180|ref|YP_001041661.1| excinuclease ABC subunit B [Shewanella baltica OS155]
 gi|126174473|ref|YP_001050622.1| excinuclease ABC subunit B [Shewanella baltica OS155]
 gi|153000637|ref|YP_001366318.1| excinuclease ABC subunit B [Shewanella baltica OS185]
 gi|304408666|ref|ZP_07390287.1| excinuclease ABC, B subunit [Shewanella baltica OS183]
 gi|307305495|ref|ZP_07585243.1| excinuclease ABC, B subunit [Shewanella baltica BA175]
 gi|125997678|gb|ABN61753.1| Excinuclease ABC subunit B [Shewanella baltica OS155]
 gi|125999836|gb|ABN63906.1| hypothetical protein Sbal_4543 [Shewanella baltica OS155]
 gi|151365255|gb|ABS08255.1| excinuclease ABC, B subunit [Shewanella baltica OS185]
 gi|304352487|gb|EFM16884.1| excinuclease ABC, B subunit [Shewanella baltica OS183]
 gi|306911798|gb|EFN42223.1| excinuclease ABC, B subunit [Shewanella baltica BA175]
          Length = 668

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/666 (56%), Positives = 484/666 (72%), Gaps = 17/666 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ + P+GDQP AIA+L+ G+ +    Q LLGVTGSGKTFT+A VI+ + RP I+
Sbjct: 4   SVFQLESQFAPAGDQPTAIAKLVDGLEAGLACQTLLGVTGSGKTFTIANVIQKLGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QYK
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDVMGQRDILIRLSELQYK 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGT+RV G+ I++FP+  E  A RV +F ++IE +SEF PLTG  I+ +    
Sbjct: 184 RNDIELQRGTYRVRGEVIDVFPADSERNAIRVELFDDEIERLSEFDPLTGHIIKRIARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A ++IKEEL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKTHYVTPREKIIAATEFIKEELRERKQYLLDNNKLIEAQRIHERVQYDVEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP  +ELE+ +G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPSVYELEKSEGEIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI        R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVGTQVDDLLSEIAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD IT S+  AI ET RRRE+Q  HN KH I P+ V ++I +V+D    
Sbjct: 544 ARNVNGKVILYADRITNSMAKAIGETDRRRERQRAHNLKHGITPKGVVKRITDVMDVDDG 603

Query: 739 EDAATTNISI----------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            D+      +          DA +LS         +  L K+MH  A NL FE+AA +RD
Sbjct: 604 RDSKAVYGKVAEPKSHYHKADATELS-------HQIDQLEKKMHEHARNLEFEQAAAMRD 656

Query: 789 EIKRLK 794
           E+K L+
Sbjct: 657 EVKHLR 662


>gi|322514289|ref|ZP_08067347.1| excision endonuclease subunit UvrB [Actinobacillus ureae ATCC
           25976]
 gi|322119827|gb|EFX91848.1| excision endonuclease subunit UvrB [Actinobacillus ureae ATCC
           25976]
          Length = 673

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/661 (56%), Positives = 489/661 (73%), Gaps = 6/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 8   FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR 
Sbjct: 68  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  ++Q+E+L+ L + QY R 
Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAELQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+  +++A RV +F ++IE +S F PLTG  +  V    IY
Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEMALRVELFDDEIESLSLFDPLTGHSLGKVPRYTIY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 248 PKTHYVTPRERILNAIEEIKQELVERCEYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL +Y
Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGLLDPIIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS++ T+E
Sbjct: 428 VRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 488 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D    + 
Sbjct: 548 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIIPQALNKKVGELLDIGQTDK 607

Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 ++  ++ S       S+K+ +  LK L +QM   A  L FE+AA +RD+I +LK
Sbjct: 608 PKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKELEFEKAAAVRDKIGQLK 667

Query: 795 S 795
           +
Sbjct: 668 A 668


>gi|217973442|ref|YP_002358193.1| excinuclease ABC subunit B [Shewanella baltica OS223]
 gi|217498577|gb|ACK46770.1| excinuclease ABC, B subunit [Shewanella baltica OS223]
          Length = 668

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/666 (56%), Positives = 484/666 (72%), Gaps = 17/666 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ + P+GDQP AIA+L+ G+ +    Q LLGVTGSGKTFT+A VI+ + RP I+
Sbjct: 4   SVFQLESQFAPAGDQPTAIAKLVDGLEAGLACQTLLGVTGSGKTFTIANVIQKLGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QYK
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDVMGQRDILIRLSELQYK 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGT+RV G+ I++FP+  E  A RV +F ++IE +SEF PLTG  I+ +    
Sbjct: 184 RNDIELQRGTYRVRGEVIDVFPADSERNAIRVELFDDEIERLSEFDPLTGHIIKRIARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A ++IKEEL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKTHYVTPREKIIAATEFIKEELRERKQYLLDNNKLIEAQRIHERVQYDVEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP  +ELE+ +G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPSVYELEKSEGEIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI        R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVGTQVDDLLSEIAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD IT S+  AI ET RRRE+Q  HN KH I P+ V ++I +V+D    
Sbjct: 544 ARNVNGKVILYADRITNSMAKAIGETDRRRERQRAHNLKHGITPKGVVKRITDVMDVDDG 603

Query: 739 EDAATTNISI----------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            D+      +          DA +LS         +  L K+MH  A NL FE+AA +RD
Sbjct: 604 RDSKAVYGKVAEPKSHYHKADATELS-------HQIDQLEKKMHEHARNLEFEQAAAMRD 656

Query: 789 EIKRLK 794
           E+K L+
Sbjct: 657 EVKHLR 662


>gi|146292950|ref|YP_001183374.1| excinuclease ABC subunit B [Shewanella putrefaciens CN-32]
 gi|145564640|gb|ABP75575.1| Excinuclease ABC subunit B [Shewanella putrefaciens CN-32]
          Length = 668

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/660 (56%), Positives = 484/660 (73%), Gaps = 5/660 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ + P+GDQPAAI +L+ G+ S    Q LLGVTGSGKTFT+A VI  + RP I+
Sbjct: 4   SVFQLESQFAPAGDQPAAITKLVDGLESGLACQTLLGVTGSGKTFTIANVIAKLGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GDS+ Q+++L  L + QY 
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDSLGQRDMLQRLSELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGTFRV G+ I+IFP+  +  A RV +F ++IE +SEF PLTGQ I+ +    
Sbjct: 184 RNDIELQRGTFRVRGEVIDIFPADSDRYAIRVELFDDEIERLSEFDPLTGQIIKRIARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A + IKEEL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKTHYVTPREKILEATELIKEELRERKQYLLDNNKLIEAQRIHERVQYDVEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP  +ELE+ +G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPSLYELEKSEGEIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI        R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVATQVDDLLSEIAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD IT S+  A++ET RRREKQ  HN K+ I P+ V ++I +V+D    
Sbjct: 544 ARNVNGKVILYADRITNSMAKAMEETDRRREKQRAHNLKNGIVPKGVVKRITDVMDVDDG 603

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLK----SLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            D+      + A+  S   K   A L      L K+MH  A NL FE+AA +RDE+K L+
Sbjct: 604 RDSKAVYGKV-AEPKSHYHKADAAELSHQIDQLEKKMHEHARNLEFEQAAAMRDEVKHLR 662


>gi|294663891|ref|ZP_06729329.1| excinuclease ABC subunit B [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292606338|gb|EFF49551.1| excinuclease ABC subunit B [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 673

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/669 (55%), Positives = 492/669 (73%), Gaps = 16/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L +G+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG  +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGGTLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +E+ +  G + E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYEVRESAGEVTELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E++   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV+  I ++++    +D
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPIADIMEGA-RDD 603

Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           AA                 + D + +  ++  GK  LKSL ++M+  A +L FE AA+IR
Sbjct: 604 AAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661

Query: 788 DEIKRLKSS 796
           D+I++LK++
Sbjct: 662 DQIQKLKAA 670


>gi|222054331|ref|YP_002536693.1| excinuclease ABC, B subunit [Geobacter sp. FRC-32]
 gi|221563620|gb|ACM19592.1| excinuclease ABC, B subunit [Geobacter sp. FRC-32]
          Length = 663

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/654 (56%), Positives = 487/654 (74%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AI +L +GI   ++ Q+LLGVTGSGKTFTMA +I  + RPA+++A
Sbjct: 3   FRLSSDYKPRGDQPQAIDELTQGIIRGDRDQVLLGVTGSGKTFTMANIIANINRPALILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++ID+MRH
Sbjct: 63  PNKTLAAQLYGEFKELFPDNAVEYFVSYYDYYQPEAYLPTTDTFIEKDSSINDEIDKMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL R D I+V+SVSCIYGIGS  SY +M +    GD V + E L  LV  QY+R 
Sbjct: 123 SATRSLLTRRDVIIVASVSCIYGIGSPASYQEMHIFFHQGDDVPRDEFLKKLVAIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +E+FP+H ++ A R+  FG+ +E ISE  PL GQ I+ +    IY
Sbjct: 183 DVDFHRGTFRVRGDIVEVFPAHDDERALRIEFFGDTVEAISEIDPLRGQVIQKLAKCAIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  + TL+ A++ I+ EL+ R+    ++  LLEAQR+EQR  +D+EM+E  G CQ
Sbjct: 243 PASHYVANKETLDRAIEQIRLELEERIRYFREQNMLLEAQRIEQRTFFDIEMMEEMGFCQ 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GR+ GEPP TL +Y P D +LF+DESH+T+ Q+ GMYRGD  RK TL  Y
Sbjct: 303 GIENYSRHFDGRSAGEPPYTLIDYFPGDFVLFIDESHITVSQVGGMYRGDRSRKETLVNY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+      T+ VSATP  +EL+Q  G++VEQ+IRPTGL+DP VE
Sbjct: 363 GFRLPSALDNRPLNFQEFTKKLNQTVYVSATPAEYELKQAGGVVVEQVIRPTGLLDPQVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D+  E+ L  ++G R+L+T LTKRMAE+LT+Y  E  I+VRY+HS++ T++
Sbjct: 423 VRPASGQVDDLLHEVRLTVEKGERVLVTTLTKRMAEELTDYYRELGIKVRYLHSDIDTIQ 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLG+FDVLVGINLLREGLDIPE  LVAI DADKEGFLRS+ SLIQT GRAAR
Sbjct: 483 RMQIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAIFDADKEGFLRSERSLIQTCGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++  VI+YAD++T+S+Q  ID T++RR+ Q E+N+++NI PQSVK++I  +++ +   D
Sbjct: 543 NLSGCVIMYADSVTRSMQACIDVTSKRRQIQQEYNRENNITPQSVKKQIRNILESVEEHD 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             T  ++ +  +  ++ K     +K LRK+M  AA  L+FE+AA +RD IK+L+
Sbjct: 603 YVTVPLAAETMEEYVAVKDIPKLVKKLRKEMLAAAKELDFEKAAGLRDRIKKLE 656


>gi|329895722|ref|ZP_08271126.1| Excinuclease ABC subunit B [gamma proteobacterium IMCC3088]
 gi|328922198|gb|EGG29553.1| Excinuclease ABC subunit B [gamma proteobacterium IMCC3088]
          Length = 704

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/669 (55%), Positives = 481/669 (71%), Gaps = 11/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y P+GDQP AI +L++G+ +    Q LLGVTGSGKTFTMA V+E +QRP IVMA
Sbjct: 35  FKVESKYKPAGDQPQAIEKLVEGVQAGLASQTLLGVTGSGKTFTMAHVVERLQRPTIVMA 94

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+N+ I++MR 
Sbjct: 95  HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNDHIEQMRL 154

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER DC+VV++VS IYG+G  +SY +M++ +  G+ + Q+ELL  L + QY R 
Sbjct: 155 SATKALMERQDCLVVATVSAIYGLGDPKSYFKMVLHVSRGEIINQRELLHQLAELQYTRN 214

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGT+RV GD I+IFP+  E  A R+ +F  +++ I  F PLTG     V  I I+
Sbjct: 215 DIAFSRGTYRVRGDVIDIFPADSEKEAVRIELFDEEVDNIVLFDPLTGAIEAKVPRITIF 274

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT R  +  A+  I+ EL+ RL +L    +L+EAQRL+QR  YD+EM+   G CQ
Sbjct: 275 PKSHYVTSRDIMLKAIDEIEIELEQRLKQLNDLNKLVEAQRLQQRTRYDIEMIRELGYCQ 334

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSRYL+GR PG+PPPTLFEY+P+++L+ +DESHVTIPQI GMYRGD  RK TL EY
Sbjct: 335 GVENYSRYLSGRGPGDPPPTLFEYLPDNALVIIDESHVTIPQIGGMYRGDRSRKETLVEY 394

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW  L P  I VSATPG++E EQ  G +VEQ++RPTGLVDP ++
Sbjct: 395 GFRLPSALDNRPLKFEEWERLVPQAIFVSATPGNYE-EQHAGRVVEQVVRPTGLVDPTID 453

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  EI+     G R+L+T LTKRMAEDLTEYL E  I+VRY+HS++ T+E
Sbjct: 454 IRPASTQVDDLLQEIHTVRATGQRVLVTTLTKRMAEDLTEYLAEHGIKVRYLHSDIDTVE 513

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 514 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSDRSLIQTIGRAAR 573

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           N+  + ILYAD +T S+Q AIDET RRR KQL HN++H I P  + + + ++++      
Sbjct: 574 NLQGRAILYADKVTGSMQRAIDETERRRTKQLAHNEEHGIKPVGITKSVQDIMEGARRMS 633

Query: 739 --------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      A    +      SL+       +K L  +M   A NL FE+AA +RD+I
Sbjct: 634 TKRNAKGERKVAEVRAAYAQDMASLTPAALSRKIKQLETEMMEHAKNLEFEKAAAVRDQI 693

Query: 791 KRLKSSPYF 799
              K   + 
Sbjct: 694 TEYKQFAFM 702


>gi|303252414|ref|ZP_07338580.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307247637|ref|ZP_07529679.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|302648873|gb|EFL79063.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|306855849|gb|EFM88010.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
          Length = 673

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/661 (56%), Positives = 490/661 (74%), Gaps = 6/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 8   FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR 
Sbjct: 68  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  ++Q+E+L+ L + QY R 
Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAELQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+  +++A RV +F ++IE +S F PLTG  +  V    IY
Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKVPRYTIY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 248 PKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL +Y
Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGLLDPIIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS++ T+E
Sbjct: 428 VRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 488 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D    + 
Sbjct: 548 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIIPQALNKKVGELLDIGQTDK 607

Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 ++  ++ S       S+K+ +  LK L +QM   A +L FE+AA +RD+I +L+
Sbjct: 608 PKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAEVRDKIGQLR 667

Query: 795 S 795
           +
Sbjct: 668 A 668


>gi|160875272|ref|YP_001554588.1| excinuclease ABC subunit B [Shewanella baltica OS195]
 gi|160860794|gb|ABX49328.1| excinuclease ABC, B subunit [Shewanella baltica OS195]
 gi|315267466|gb|ADT94319.1| excinuclease ABC, B subunit [Shewanella baltica OS678]
          Length = 668

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/666 (56%), Positives = 484/666 (72%), Gaps = 17/666 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ + P+GDQP AIA+L+ G+ +    Q LLGVTGSGKTFT+A VI+ + RP I+
Sbjct: 4   SVFQLESQFAPAGDQPTAIAKLVDGLEAGLACQTLLGVTGSGKTFTIANVIQKLGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QYK
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDVMGQRDILIRLSELQYK 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGT+RV G+ I++FP+  E  A RV +F ++IE +SEF PLTG  I+ +    
Sbjct: 184 RNDIELQRGTYRVRGEVIDVFPADSERNAIRVELFDDEIERLSEFDPLTGHIIKRIARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A ++IKEEL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKTHYVTPREKIIAATEFIKEELRERKQFLLDNNKLIEAQRIHERVQYDVEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP  +ELE+ +G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPSVYELEKSEGEIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI        R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVGTQVDDLLSEIAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD IT S+  AI ET RRRE+Q  HN KH I P+ V ++I +V+D    
Sbjct: 544 ARNVNGKVILYADRITNSMAKAIGETDRRRERQRAHNLKHGITPKGVVKRITDVMDVDDG 603

Query: 739 EDAATTNISI----------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            D+      +          DA +LS         +  L K+MH  A NL FE+AA +RD
Sbjct: 604 RDSKAVYGKVAEPKSHYHKADATELS-------HQIDQLEKKMHEYARNLEFEQAAAMRD 656

Query: 789 EIKRLK 794
           E+K L+
Sbjct: 657 EVKHLR 662


>gi|332089011|gb|EGI94123.1| excinuclease ABC, B subunit [Shigella boydii 5216-82]
          Length = 673

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D IVV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHGLEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|188991070|ref|YP_001903080.1| excinuclease ABC subunit B [Xanthomonas campestris pv. campestris
           str. B100]
 gi|229557971|sp|B0RRD9|UVRB_XANCB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|167732830|emb|CAP51024.1| excinuclease ABC subunit B [Xanthomonas campestris pv. campestris]
          Length = 673

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/669 (55%), Positives = 491/669 (73%), Gaps = 16/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FELVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L IG+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G I E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEITELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E++   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV   I ++++    ED
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVARPISDIMEGA-RED 603

Query: 741 AATTNIS-------------IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           AA                   D + +  ++  GK  LK+L ++M+  A +L FE AA+IR
Sbjct: 604 AAEKKAGKGRSKSRQVAEEPADYRAMGPAEIAGK--LKALEQKMYQHAKDLEFEAAAQIR 661

Query: 788 DEIKRLKSS 796
           D+I++LK++
Sbjct: 662 DQIQKLKAA 670


>gi|320178489|gb|EFW53454.1| Excinuclease ABC subunit B [Shigella boydii ATCC 9905]
 gi|333006897|gb|EGK26393.1| excinuclease ABC, B subunit [Shigella flexneri VA-6]
          Length = 673

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D IVV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|255021827|ref|ZP_05293837.1| Excinuclease ABC subunit B [Acidithiobacillus caldus ATCC 51756]
 gi|254968651|gb|EET26203.1| Excinuclease ABC subunit B [Acidithiobacillus caldus ATCC 51756]
          Length = 676

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/667 (55%), Positives = 488/667 (73%), Gaps = 7/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
             +++ + P GDQP AIA+L+ G+ S E  Q LLGVTGSGKTFTMA VI   QRPAIVMA
Sbjct: 5   LSLESVFPPCGDQPVAIAELVDGLASGESFQTLLGVTGSGKTFTMANVIARTQRPAIVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E + FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 65  PNKTLAAQLYAELRAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V++VS IYG+G   +Y  MI+ L+ GD+++Q+ +L  L   QY R 
Sbjct: 125 SATKALLERPDVVIVATVSAIYGLGDPAAYHNMILHLREGDAMDQRAILRRLADMQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            + + R TFRV GD I+I+P+  ED A RV +FG++IE IS F PLTG+ I  +    +Y
Sbjct: 185 PMELKRSTFRVNGDVIDIWPAESEDEAVRVELFGDEIERISLFDPLTGKTITRLPRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  +  A++ IK+EL+ RL  L +E +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 245 PKSHYVTPREQILAAIEQIKDELRERLDVLRRENKLVEAQRLEQRTRFDLEMMAELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTL +Y+P ++LLF+DESHVT+PQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRAPGEPPPTLMDYLPANALLFIDESHVTVPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+  L P TI +SATPG +EL +  G +VEQ++RPTGLVDP VE
Sbjct: 365 GFRLPSALDNRPLMFPEFEALMPQTIFISATPGPYELSRS-GRVVEQVVRPTGLVDPEVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A+ QV+D+  EI+     G R+L+T LTKRMAEDL++YL+E  I+ RY+HS+++T+E
Sbjct: 424 VRPAKGQVDDLVSEIHAVIASGWRVLVTTLTKRMAEDLSDYLHELGIQCRYLHSDIETVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RVEIIRDLRAGVFDVLIGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ + ILYADTIT S+  A++ET RRR KQ+  N +H I P+ + + + ++++ +   +
Sbjct: 544 NLHGRAILYADTITGSMARAMEETERRRNKQIRFNAEHGITPKGIVKPVADILEGVYRRN 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHL----KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +           + +  K    L    + L + MH  A NL FE+AA +RD+I+ L++ 
Sbjct: 604 GSGARTKAAEPTPTYADVKDPRALAKRIRELEETMHRHARNLEFEQAAALRDQIRILEAE 663

Query: 797 PYFQGLD 803
               GLD
Sbjct: 664 --ILGLD 668


>gi|307545136|ref|YP_003897615.1| excinuclease ABC subunit B [Halomonas elongata DSM 2581]
 gi|307217160|emb|CBV42430.1| excinuclease ABC subunit B [Halomonas elongata DSM 2581]
          Length = 673

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/668 (55%), Positives = 482/668 (72%), Gaps = 20/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ + P+GDQP+AI  L+KG+ +    Q LLGVTGSGKTFTMA V+E +QRP IVMA
Sbjct: 5   FRLESKFKPAGDQPSAIEGLVKGLEAGLAHQTLLGVTGSGKTFTMANVVERLQRPTIVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V SVS IYG+G  + Y +M +    G+ ++Q+  L  L + QY R 
Sbjct: 125 SATKALLERRDALIVVSVSAIYGLGDPDLYLKMRLHFNRGELIDQRAFLRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGT+RV GD I+IFP+  ED A RV +F ++I++IS F PLTG+    V  + IY
Sbjct: 185 DMDFKRGTYRVRGDVIDIFPADAEDEAVRVELFDDEIDQISLFDPLTGEVRGKVPRMTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR T+  A+  IKEEL  RL  + +  +L+EAQRLEQR  YD+EM+   G C 
Sbjct: 245 PKTHYVTPRETIMGAIDSIKEELAERLAWMRQHDKLVEAQRLEQRSLYDIEMMLELGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPT F+Y+P D+LLF+DESHV++PQ+ GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRAPGEPPPTFFDYLPADALLFIDESHVSVPQVGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+ F+EW  + P  + VSATPG +E E   G +VEQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMTFQEWERICPQAVFVSATPGPYEAEHA-GQVVEQVVRPTGLLDPEIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  E+   +    R+L+T LTKRMAEDLTEYL E ++RVRY+HS++ T+E
Sbjct: 424 VRPASTQVDDLLSEVRARSAVDERVLVTTLTKRMAEDLTEYLDEHDVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 484 RVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + K +LY D +T S++ AIDET RRR KQ+ HN++H I P++V   + ++     LE 
Sbjct: 544 NAHGKAVLYGDRVTDSMRRAIDETERRRAKQIAHNEEHGITPETVSRSVADI-----LES 598

Query: 741 AATTNISIDAQQL--------------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           A T       ++               SLS  + +  L  L   M  AA NL FEEAAR+
Sbjct: 599 AETPGRKGKGRKSERKVAEGAAIYDPDSLSPAEIQKELTRLEDAMVEAAQNLEFEEAARL 658

Query: 787 RDEIKRLK 794
           RD +  LK
Sbjct: 659 RDRLHELK 666


>gi|328474566|gb|EGF45371.1| excinuclease ABC subunit B [Vibrio parahaemolyticus 10329]
          Length = 676

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/669 (55%), Positives = 496/669 (74%), Gaps = 17/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ ++Y PSGDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRPAI++A
Sbjct: 5   YELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  ESY QM++ L+ GD ++Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF ++++ IS F PLTG  K R++    I
Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRYTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R  +L +  +L+E QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G I +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLLDPIL 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K ILYAD+ITKS++ A+DET RRREKQ  +N+K  I PQ++K  I ++++   L 
Sbjct: 545 RNIEGKAILYADSITKSMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D   +    + +Q+ LSK             ++ +  +  L   M+  A +L FE AA  
Sbjct: 602 DITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEISRLEAAMYQHAQDLEFELAAEK 661

Query: 787 RDEIKRLKS 795
           RDEI++L++
Sbjct: 662 RDEIEKLRA 670


>gi|260914232|ref|ZP_05920705.1| excision endonuclease subunit UvrB [Pasteurella dagmatis ATCC
           43325]
 gi|260631865|gb|EEX50043.1| excision endonuclease subunit UvrB [Pasteurella dagmatis ATCC
           43325]
          Length = 677

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/662 (56%), Positives = 488/662 (73%), Gaps = 8/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ PSGDQP AI QL++G+ +    Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 10  FILHSDFSPSGDQPQAITQLIEGLENGLAHQTLLGVTGSGKTFTIANVIAKLNRPAMLLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 70  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY +M++ L+ G  + Q+++L+ L + QY R 
Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQAGAIINQRQILAQLAELQYTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A RV +F ++IE +S F PLTG     V    IY
Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDKAVRVELFDDEIERLSLFDPLTGTNFGAVPRYTIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IKEEL  R   L +  +LLE QR+ QR  +D+EM+   G C 
Sbjct: 250 PKTHYVTPRERILDAIEKIKEELAERKKFLLENNKLLEEQRITQRTQFDIEMMNELGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+YIP D LL +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 310 GIENYSRYLSGRKEGEPPPTLFDYIPSDGLLIIDESHVTVPQIGGMYRGDRSRKETLVEY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+  G I++Q++RPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSNGEIIDQVVRPTGLLDPEIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A+Q  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 430 IRPVAIQVDDLLSEARQRAEQNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           N+  K ILYAD IT S++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D      
Sbjct: 550 NLKGKAILYADRITNSMEKAIGETNRRREKQMKYNEEHGIVPQALNKKVGELLDIGQGAN 609

Query: 735 --PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                 ++A     S    Q+  + K+ +  +K L +QM+  A +L FE+AA +RD++++
Sbjct: 610 QKAKANKNAKKVAESTALYQVPQTPKEYQQQIKKLEQQMYKYAQDLEFEKAAAVRDQLQQ 669

Query: 793 LK 794
           L+
Sbjct: 670 LR 671


>gi|170720725|ref|YP_001748413.1| excinuclease ABC subunit B [Pseudomonas putida W619]
 gi|169758728|gb|ACA72044.1| excinuclease ABC, B subunit [Pseudomonas putida W619]
          Length = 671

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/669 (55%), Positives = 489/669 (73%), Gaps = 22/669 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI Q+++GI +    Q LLGVTGSGKTF++A VI  +QRP +V+A
Sbjct: 4   FQLVTRFQPAGDQPEAIRQMVEGIEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   R TFRV GD I+IFP+  +  A R+ +F +++E I+ F PLTG+  R +     Y
Sbjct: 184 EMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVFRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A++ IK+ELK RL  L K  +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLLEAVEGIKDELKERLEYLHKANKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTL++Y+P+D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPDDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG +E E   G +VEQ++RPTGLVDP VE
Sbjct: 364 GFRLPSALDNRPMRFDEWESVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDPQVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI    +QG R+L T LTKRMAEDL++YL + ++RVRY+HS++ T+E
Sbjct: 423 VRPALTQVDDLLSEIRKRVEQGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD IT S+Q AIDET RRREKQ+  N+ + I P+ V + I +++      +
Sbjct: 543 NLNGRAILYADQITGSMQRAIDETERRREKQIAFNQANGIVPKGVVKDITDIM------E 596

Query: 741 AATTNISIDAQQLSLSKKKGKA---------------HLKSLRKQMHLAADNLNFEEAAR 785
            AT   S   ++  ++K   ++                +K L ++M   A +L FE AA+
Sbjct: 597 GATVPGSRSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQ 656

Query: 786 IRDEIKRLK 794
           +RDEI +L+
Sbjct: 657 LRDEITKLR 665


>gi|28898874|ref|NP_798479.1| excinuclease ABC subunit B [Vibrio parahaemolyticus RIMD 2210633]
 gi|260879452|ref|ZP_05891807.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus AN-5034]
 gi|260898249|ref|ZP_05906745.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus Peru-466]
 gi|260903248|ref|ZP_05911643.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus AQ4037]
 gi|32130285|sp|Q87MX6|UVRB_VIBPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|28807093|dbj|BAC60363.1| excinuclease ABC, subunit B [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088365|gb|EFO38060.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus Peru-466]
 gi|308093544|gb|EFO43239.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus AN-5034]
 gi|308106551|gb|EFO44091.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus AQ4037]
          Length = 676

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/669 (55%), Positives = 495/669 (73%), Gaps = 17/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ ++Y PSGDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRPAI++A
Sbjct: 5   YELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  ESY QM++ L+ GD ++Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF ++++ IS F PLTG  K R++    I
Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRYTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R  +L +  +L+E QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G I +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLLDPIL 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K ILYAD ITKS++ A+DET RRREKQ  +N+K  I PQ++K  I ++++   L 
Sbjct: 545 RNIEGKAILYADNITKSMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D   +    + +Q+ LSK             ++ +  +  L   M+  A +L FE AA  
Sbjct: 602 DITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEISRLEAAMYQHAQDLEFELAAEK 661

Query: 787 RDEIKRLKS 795
           RDEI++L++
Sbjct: 662 RDEIEKLRA 670


>gi|15602294|ref|NP_245366.1| excinuclease ABC subunit B [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13431963|sp|P57844|UVRB_PASMU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|12720682|gb|AAK02513.1| UvrB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 678

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/671 (56%), Positives = 493/671 (73%), Gaps = 15/671 (2%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
           H+K    F + +D+ PSGDQP AI QL++G+ +    Q LLGVTGSGKTFT+A VI  + 
Sbjct: 6   HTKS---FILHSDFSPSGDQPQAITQLIEGLENGLAHQTLLGVTGSGKTFTIANVIAKLN 62

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPA+V+APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+
Sbjct: 63  RPAMVLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASIND 122

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           QI++MR SAT+S LER D IVV+SVS IYG+G  +SY +M++ L+ G  + Q+++L+ L 
Sbjct: 123 QIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQTGAIINQRQILAQLA 182

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
           + QY R D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     
Sbjct: 183 ELQYTRNDQAFERGTFRVRGEIIDIFPAESDDKAIRIELFDDEIERLSLFDPLTGSSFGP 242

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           V    IY  +HYVTPR  +  A++ IK+EL  R   L +  +LLE QR+ QR  +D+EM+
Sbjct: 243 VPRYTIYPKTHYVTPRERILNAIEKIKQELAERRQFLLENNKLLEEQRITQRTQFDIEMM 302

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
              G C  IENYSRYL+GRN GEPPPTLF+Y+P D+LL +DESHVT+PQI GMYRGD  R
Sbjct: 303 NELGYCSGIENYSRYLSGRNEGEPPPTLFDYMPSDALLIIDESHVTVPQIGGMYRGDRSR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+  G I++Q++RPTG
Sbjct: 363 KETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGGEIIDQVVRPTG 422

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP +EIR    QV+D+  E    A Q  R+L+T LTK+MAEDLT+YL E  IRVRY+H
Sbjct: 423 LLDPEIEIRPVAIQVDDLLSEARQRADQNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLH 482

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQ
Sbjct: 483 SDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 542

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAARN+  K ILYAD IT S+Q AI ET RRREKQ+++N+   I PQ++ +K+ E++
Sbjct: 543 TIGRAARNLKGKAILYADRITNSMQKAITETNRRREKQMKYNEARGIVPQALNKKVGELL 602

Query: 734 DPILLEDA-----ATTNISIDAQQLSL-----SKKKGKAHLKSLRKQMHLAADNLNFEEA 783
           D  + + A     A  N    A+  +L     + K+ +  +K L +QM+  A +L FE+A
Sbjct: 603 D--IGQGANQKAKANRNAKKVAEPTALYVVPQTAKEYQQQIKKLEQQMYKYAQDLEFEKA 660

Query: 784 ARIRDEIKRLK 794
           A +RD++++L+
Sbjct: 661 AAVRDQLQQLR 671


>gi|325578560|ref|ZP_08148660.1| excision endonuclease subunit UvrB [Haemophilus parainfluenzae ATCC
           33392]
 gi|325159796|gb|EGC71926.1| excision endonuclease subunit UvrB [Haemophilus parainfluenzae ATCC
           33392]
          Length = 678

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/673 (56%), Positives = 487/673 (72%), Gaps = 30/673 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ PSGDQP AI +L++ +      Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 10  FILHSDFKPSGDQPQAIEKLVENLEDGLAHQTLLGVTGSGKTFTIANVIATLNRPAMLLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 70  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  + Q+++L+ L + QY R 
Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIINQRQILAKLAELQYTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V    +Y
Sbjct: 190 DQAFQRGTFRVRGEVIDIFPAESDDRAIRIELFDDEIERLSLFDPLTGTSFGAVPRFTVY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 250 PKTHYVTPRERILDAIEKIKAELVQRREYFIKEHKLLEEQRITQRTQFDIEMMNELGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    IV+Q++RPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGTEIVDQVVRPTGLLDPQIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD+ITKS++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D      
Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQMKYNEEHGIVPQALNKKVGELLD------ 603

Query: 741 AATTNISIDAQQLSLSKKKGKA-------------------HLKSLRKQMHLAADNLNFE 781
                I   A Q + SK++GK                     +K L +QM+  A +L FE
Sbjct: 604 -----IGQGANQKAKSKQRGKTAAEPTALYNAPKSAKEFQQQIKKLEQQMYKFAQDLEFE 658

Query: 782 EAARIRDEIKRLK 794
           +AA +RD++ +L+
Sbjct: 659 KAAAVRDKLHQLR 671


>gi|303250430|ref|ZP_07336628.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307252217|ref|ZP_07534114.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302650756|gb|EFL80914.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306860139|gb|EFM92155.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 673

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/661 (56%), Positives = 490/661 (74%), Gaps = 6/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 8   FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR 
Sbjct: 68  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  ++Q+E+L+ L + QY R 
Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQLGAIIDQREILARLAELQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+  +++A RV +F ++IE +S F PLTG  +  V    IY
Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKVPRYTIY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 248 PKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL +Y
Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGLLDPIIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS++ T+E
Sbjct: 428 VRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 488 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D    + 
Sbjct: 548 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIIPQALNKKVGELLDIGQTDK 607

Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 ++  ++ S       S+K+ +  LK L +QM   A +L FE+AA +RD+I +L+
Sbjct: 608 PKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAEVRDKIGQLR 667

Query: 795 S 795
           +
Sbjct: 668 A 668


>gi|110833806|ref|YP_692665.1| excinuclease ABC subunit B [Alcanivorax borkumensis SK2]
 gi|110646917|emb|CAL16393.1| excinuclease ABC, B subunit [Alcanivorax borkumensis SK2]
          Length = 671

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/668 (56%), Positives = 482/668 (72%), Gaps = 18/668 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++ +DY P+GDQP AIAQL++GI      Q LLGVTGSGKTFTMA VI    RP I+
Sbjct: 4   SLFKLHSDYQPAGDQPTAIAQLIEGIDDGLGHQTLLGVTGSGKTFTMANVIAQTGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY EF+ FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NEQI++M
Sbjct: 64  MAPNKTLAAQLYGEFREFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEQIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D I+V++VS IYG+G   SY  M++ L  GD ++Q+ELL  L + QY 
Sbjct: 124 RLSATKAILERPDTIIVATVSAIYGLGDPASYHAMVLHLVRGDHIDQRELLRRLAELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R ++   R T+RV GD I+IFP+  E  A R+ +F +++E IS F PLTG+ IR +    
Sbjct: 184 RNEMDFRRATYRVRGDVIDIFPAEEEKEAVRIELFDDEVESISIFDPLTGEVIRRISRTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYVTPR T+  A++ IKEEL  RL EL+++ +L+EAQRLEQR  +D+EML+  G 
Sbjct: 244 IYPKSHYVTPRETVLKAVEMIKEELAERLAELKEQNKLVEAQRLEQRTRFDIEMLQELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  +ENYSR  +GR PG+ PPTLF+Y+P+++LL  DESHVTIPQ+  MY+GD  RK TL 
Sbjct: 304 CNGVENYSRLFSGRAPGDAPPTLFDYLPDNALLIADESHVTIPQLGAMYKGDRSRKETLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            +GFRLPS MDNRPL+FEEW  L P  + VSATPG +E ++  G +VEQ++RPTGLVDP 
Sbjct: 364 SFGFRLPSAMDNRPLKFEEWELLAPQMVFVSATPGPYE-KKYAGQVVEQVVRPTGLVDPK 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR A TQV+D+  E      +  R+L+T LTKRMAEDLTEYL E  IRVRY+HS++ T
Sbjct: 423 IEIRPATTQVDDLLGEAKECIAKEQRVLVTTLTKRMAEDLTEYLNEHGIRVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSDRSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV+ + ILYAD +T S++ AIDET RRREKQ   N+ + I PQ + +KI +++D    
Sbjct: 543 ARNVDGRAILYADKMTGSMERAIDETDRRREKQEAFNEANGITPQGLNKKIRDIMD---- 598

Query: 739 EDAATTNI------------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
            D+  +              S      + S  +    +K+L  +M   A NL FE+AA  
Sbjct: 599 -DSGGSRFDRKYKGEKKVAESPSDYLGARSPAQVAKEIKALEAKMMEHAKNLEFEDAAAT 657

Query: 787 RDEIKRLK 794
           RD+I +L+
Sbjct: 658 RDKIHQLR 665


>gi|325917766|ref|ZP_08179951.1| Excinuclease ABC subunit B [Xanthomonas vesicatoria ATCC 35937]
 gi|325536021|gb|EGD07832.1| Excinuclease ABC subunit B [Xanthomonas vesicatoria ATCC 35937]
          Length = 673

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/669 (55%), Positives = 492/669 (73%), Gaps = 16/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FELVSPYSPAGDQPAAIEKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L +G+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  D+E+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDVEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G I E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEITELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E++   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV   I ++++    ED
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVARPISDIMEGA-RED 603

Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           AA                 + D + +  ++  GK  LKSL ++M+  A +L FE AA+IR
Sbjct: 604 AAEKRAGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661

Query: 788 DEIKRLKSS 796
           D+I++LK++
Sbjct: 662 DQIQKLKAA 670


>gi|307249872|ref|ZP_07531846.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858061|gb|EFM90143.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 673

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/661 (56%), Positives = 490/661 (74%), Gaps = 6/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 8   FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR 
Sbjct: 68  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  ++Q+E+L+ L + QY R 
Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAELQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+  +++A RV +F ++IE +S F PLTG  +  V    IY
Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKVPRYTIY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 248 PKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL +Y
Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGLLDPIIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EI+       R+L+T LTK+MAEDLT+YL E  + VRY+HS++ T+E
Sbjct: 428 VRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVCVRYLHSDIDTVE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 488 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S+Q AI ET RRREKQ ++N++H+I PQ++ +K+ E++D    + 
Sbjct: 548 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHSITPQALNKKVGELLDIGQTDK 607

Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 ++  ++ S       S+K+ +  LK L +QM   A +L FE+AA +RD+I +LK
Sbjct: 608 PKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAAVRDKIGQLK 667

Query: 795 S 795
           +
Sbjct: 668 A 668


>gi|85860217|ref|YP_462419.1| excinuclease ABC subunit B [Syntrophus aciditrophicus SB]
 gi|85723308|gb|ABC78251.1| excinuclease ABC subunit B [Syntrophus aciditrophicus SB]
          Length = 696

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/653 (56%), Positives = 489/653 (74%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ T++ P GDQP AI +L  G+      Q+L+GVTGSGKTFT+A VIEA+Q+PA+++A
Sbjct: 32  FRIVTEFKPRGDQPQAIEKLADGLRLGLPHQVLVGVTGSGKTFTIANVIEAVQKPALIIA 91

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+ FP NAVEYFVSYYDYYQPEAY+P TDTYIEK+SSINE ID++RH
Sbjct: 92  PNKTLAAQLYGEFKSLFPDNAVEYFVSYYDYYQPEAYIPSTDTYIEKDSSINEDIDKLRH 151

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT SLL+R D I+V+SVSCIYG+GS E+Y  ++++L+ G  + ++ +L  LV  QY+R 
Sbjct: 152 AATHSLLDRRDVIIVASVSCIYGLGSPEAYQGLLLELEAGMELSREMMLRRLVDIQYERN 211

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD +EIFP + ED A RV  FG+ ++ +S   PL G+K+ ++E I +Y
Sbjct: 212 DVDFHRGSFRVRGDVVEIFPPYEEDRAIRVEFFGDVVDALSFVDPLRGKKLHSLERIAVY 271

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT R  LN A+  I+EEL+ RL EL    +LLEAQRLEQR  +D+EM+E  G CQ
Sbjct: 272 PGSHYVTTRDNLNRAIAAIREELQGRLAELHAANKLLEAQRLEQRTNFDIEMMEEMGYCQ 331

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGEPPPTL EY+P+D+L+ +DESHVT+PQ+ GMYRGD  RK TL  Y
Sbjct: 332 GIENYSRHLTGRAPGEPPPTLVEYLPKDALIILDESHVTVPQLIGMYRGDRSRKETLVNY 391

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       + +SATP ++E+++    +VEQIIRPTGL+DP + 
Sbjct: 392 GFRLPSALDNRPLRFEEYEKFPQQRLYISATPAAYEIKKAGPHVVEQIIRPTGLMDPEII 451

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI   A++  R+L+T LTKRMAE+L+ Y     ++V+Y+HS+V+TLE
Sbjct: 452 VRPVTGQVDDLLTEIRRRAEKKERVLVTTLTKRMAENLSTYYEGLGVKVKYLHSDVQTLE 511

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ IIRDLRLG+FDVLVG+NLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT GRAAR
Sbjct: 512 RVSIIRDLRLGEFDVLVGVNLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTSGRAAR 571

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +VI+YADTIT+SIQ  +DET RRR  Q  +N++H+I P+S+K+ I  ++  I   D
Sbjct: 572 NVGGQVIMYADTITRSIQACLDETRRRRALQERYNREHSITPESIKKSIDNILSSIYEAD 631

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             +  +  + +Q+ LS    +  ++ L+ +M  AA  L FE+AAR+RD+IK L
Sbjct: 632 YVSVPVVSEEKQVYLSDTDLEKTIRQLKGEMKEAAKRLEFEKAARLRDQIKAL 684


>gi|91227346|ref|ZP_01261735.1| excinuclease ABC subunit B [Vibrio alginolyticus 12G01]
 gi|91188610|gb|EAS74900.1| excinuclease ABC subunit B [Vibrio alginolyticus 12G01]
          Length = 676

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/669 (55%), Positives = 495/669 (73%), Gaps = 17/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ +DY PSGDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRPAI++A
Sbjct: 5   YELVSDYQPSGDQPGAINQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  ESY QM++ L+ GD +EQ+++L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIEQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF ++++ IS F PLTG  K R++    I
Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRYTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R  +L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRDRILEAIENIKVELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G + +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSAGDVADQVVRPTGLLDPEL 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K ILYAD IT S++ A+DET RRREKQ  +N++  I+PQ++K  I ++++   L 
Sbjct: 545 RNIEGKAILYADRITNSMKKAMDETNRRREKQEAYNEEMGISPQALKRNIKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D   +    + +Q+ LSK             ++ +  +  L   M+  A +L FE AA+ 
Sbjct: 602 DITKSKRQRNTKQVPLSKVAEPSQTYEALSPQQLEKEISRLEAAMYQHAQDLEFELAAQK 661

Query: 787 RDEIKRLKS 795
           RDEI++L++
Sbjct: 662 RDEIEKLRA 670


>gi|257464648|ref|ZP_05629019.1| excinuclease ABC subunit B [Actinobacillus minor 202]
 gi|257450308|gb|EEV24351.1| excinuclease ABC subunit B [Actinobacillus minor 202]
          Length = 672

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/661 (57%), Positives = 491/661 (74%), Gaps = 8/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP AIA+L++G++     Q LLGVTGSGKTFT+A VI  + RPA+V+A
Sbjct: 8   FILHSPFKPSGDQPTAIAKLVEGLNDGLAHQTLLGVTGSGKTFTIANVIATLNRPAMVLA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR 
Sbjct: 68  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQIEQMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G+ ++Q+++LS L + QY R 
Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGEMIDQRKILSRLAELQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+  +DVA RV +F ++IE +S F PLTG  +  V    IY
Sbjct: 188 DQAFQRATFRVRGEVIDIFPAESDDVALRVELFDDEIENLSLFDPLTGHSLGRVPRYTIY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IKEEL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 248 PKTHYVTPRERILEAIEQIKEELAERRTYFIKENKLLEEQRIAQRTQFDIEMMNELGYCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GM+RGD  RK TL +Y
Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPSDGLLIIDESHVTVPQIGGMFRGDRARKETLVQY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+   +I +Q++RPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLRFEEFERLSPQTIYVSATPGPYELEKNPDVI-DQVVRPTGLLDPIIE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS++ T+E
Sbjct: 427 VRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 487 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D I   D
Sbjct: 547 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIVPQALNKKVGELLD-IGQTD 605

Query: 741 ----AATTNISIDAQQLSL--SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               +  +  S D Q   +  S+K+ +  LK L +QM   A +L FE+AA +RD+I +LK
Sbjct: 606 KPKRSKKSAKSTDNQTAYIPKSRKELEKELKVLEQQMRDFAKDLEFEKAAAVRDKIHQLK 665

Query: 795 S 795
           +
Sbjct: 666 A 666


>gi|333009765|gb|EGK29214.1| excinuclease ABC, B subunit [Shigella flexneri K-272]
 gi|333020430|gb|EGK39693.1| excinuclease ABC, B subunit [Shigella flexneri K-227]
          Length = 673

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSVFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D IVV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|289667337|ref|ZP_06488412.1| excinuclease ABC subunit B [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 673

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/669 (55%), Positives = 492/669 (73%), Gaps = 16/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T++ V++ +Q+P +VMA
Sbjct: 5   FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTISNVVQHVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L +G+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G + E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI+   + G R+L+T LTKRM+E+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEIHERIKLGDRVLVTTLTKRMSENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV+  I ++++    ED
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPISDIMEGA-RED 603

Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           A                  + D + +  ++  GK  LKSL ++M+  A +L FE AA+IR
Sbjct: 604 AVEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661

Query: 788 DEIKRLKSS 796
           D+I++LK++
Sbjct: 662 DQIQKLKAA 670


>gi|296388360|ref|ZP_06877835.1| excinuclease ABC subunit B [Pseudomonas aeruginosa PAb1]
          Length = 670

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/666 (55%), Positives = 485/666 (72%), Gaps = 17/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +V+A
Sbjct: 4   FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G   SY +M++ L  GD ++Q+ELL  L   QY R 
Sbjct: 124 SATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+IFP+  +  A RV +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A+  IK ELK RL  L    +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+  M++GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW  + P TI VSATPG +E E   G I+EQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRIIEQVVRPTGLVDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  +I     +  R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ T+E
Sbjct: 423 VRPAMTQVDDLLSQIRQRVAKNERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ K ILYAD +T S+Q AIDET RRR KQ+  N+ H I P+ V++ I ++++  ++  
Sbjct: 543 NLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNQAHGIVPKGVRKDIKDILEGAVVPG 602

Query: 741 AATTNISIDAQQLSLSKKKGK------------AHLKSLRKQMHLAADNLNFEEAARIRD 788
           A      +      ++++ G+              ++ L ++M+  A +L FE AA++RD
Sbjct: 603 ARGKRKGV----AKVAEESGRYENELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRD 658

Query: 789 EIKRLK 794
           EI+ L+
Sbjct: 659 EIQTLR 664


>gi|313108461|ref|ZP_07794465.1| excinuclease ABC subunit B [Pseudomonas aeruginosa 39016]
 gi|310880967|gb|EFQ39561.1| excinuclease ABC subunit B [Pseudomonas aeruginosa 39016]
          Length = 670

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/666 (55%), Positives = 485/666 (72%), Gaps = 17/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +V+A
Sbjct: 4   FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G   SY +M++ L  GD ++Q+ELL  L   QY R 
Sbjct: 124 SATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+IFP+  +  A RV +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A+  IK ELK RL  L    +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLLEAVDQIKAELKERLDYLRNSNKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+  M++GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW  + P TI VSATPG +E E   G I+EQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRIIEQVVRPTGLVDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  +I     +  R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ T+E
Sbjct: 423 VRPAMTQVDDLLSQIRQRVAKNERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ K ILYAD +T S+Q AIDET RRR KQ+  N+ H I P+ V++ I ++++  ++  
Sbjct: 543 NLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNQAHGIVPKGVRKDIKDILEGAVVPG 602

Query: 741 AATTNISIDAQQLSLSKKKGK------------AHLKSLRKQMHLAADNLNFEEAARIRD 788
           A      +      ++++ G+              ++ L ++M+  A +L FE AA++RD
Sbjct: 603 ARGKRKGV----AKVAEESGRYENELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRD 658

Query: 789 EIKRLK 794
           EI+ L+
Sbjct: 659 EIQTLR 664


>gi|332288675|ref|YP_004419527.1| excinuclease ABC subunit B [Gallibacterium anatis UMN179]
 gi|330431571|gb|AEC16630.1| excinuclease ABC subunit B [Gallibacterium anatis UMN179]
          Length = 677

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/668 (56%), Positives = 485/668 (72%), Gaps = 21/668 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ PSGDQP AIA+L++ ++     Q LLGVTGSGKTFT+A VI  + RPA++ A
Sbjct: 8   FILHSDFKPSGDQPTAIAKLVENLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMIFA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 68  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINDQIEQMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY +M++ L+ G  ++Q+E+LS L   QY R 
Sbjct: 128 SATKSFLERRDTIVVTSVSAIYGLGDPDSYLKMMLHLQTGAIIDQREILSHLAALQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +DVA RV +F  +IE +S F PLT +    V    +Y
Sbjct: 188 DHAFQRGTFRVHGEVIDIFPAESDDVALRVELFDEEIERLSLFDPLTNRSFGAVPRYTVY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 248 PKTHYVTPRERILEAIEQIKQELVQRREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+YIP D LL +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYIPNDGLLIIDESHVTVPQIGGMYRGDRSRKETLVEY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGDEIIDQVVRPTGLLDPEIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI L  ++  R+L+T LTK+MAEDLT+YL E  + VRY+HS++ T+E
Sbjct: 428 VRPVSTQVDDLLSEIRLRVEKNERVLVTTLTKKMAEDLTDYLAEHGVLVRYLHSDIDTVE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 488 RVEIIRDLRAGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           N+N K ILYAD IT S+Q AIDET RRR+KQ  +N++H I P+++ +KI E++D      
Sbjct: 548 NLNGKAILYADRITPSMQKAIDETERRRQKQQAYNEQHGIVPKALNKKIGEILDIGQSAN 607

Query: 735 --------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
                   P   E AAT  +  +A+ L       +  +K L +QM+  A +L FE+AA+ 
Sbjct: 608 QKAKKQRLPKAAEPAATYEMLDNAKDL-------QKQIKHLEQQMYKFAQDLEFEKAAQA 660

Query: 787 RDEIKRLK 794
           RD++  L+
Sbjct: 661 RDQLHALR 668


>gi|116051134|ref|YP_790035.1| excinuclease ABC subunit B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586355|gb|ABJ12370.1| excinuclease ABC subunit B [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 670

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/666 (55%), Positives = 485/666 (72%), Gaps = 17/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +V+A
Sbjct: 4   FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G   SY +M++ L  GD ++Q+ELL  L   QY R 
Sbjct: 124 SATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+IFP+  +  A RV +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A+  IK ELK RL  L    +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+  M++GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW  + P TI VSATPG +E E   G I+EQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRIIEQVVRPTGLVDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  +I     +  R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ T+E
Sbjct: 423 VRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ K ILYAD +T S+Q AIDET RRR KQ+  N+ H I P+ V++ I ++++  ++  
Sbjct: 543 NLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAVVPG 602

Query: 741 AATTNISIDAQQLSLSKKKGK------------AHLKSLRKQMHLAADNLNFEEAARIRD 788
           A      +      ++++ G+              ++ L ++M+  A +L FE AA++RD
Sbjct: 603 ARGKRKGV----AKVAEESGRYENELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRD 658

Query: 789 EIKRLK 794
           EI+ L+
Sbjct: 659 EIQTLR 664


>gi|1592818|emb|CAA63759.1| uvrB [Pseudomonas aeruginosa PAO1]
          Length = 670

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/666 (55%), Positives = 485/666 (72%), Gaps = 17/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +V+A
Sbjct: 4   FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G   SY +M++ L  GD ++Q+ELL  L   QY R 
Sbjct: 124 SATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLQRLTSLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+IFP+  +  A RV +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A+  IK ELK RL  L    +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+  M++GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW  + P TI VSATPG +E E   G I+EQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRIIEQVVRPTGLVDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  +I     +  R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ T+E
Sbjct: 423 VRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ K ILYAD +T S+Q AIDET RRR KQ+  N+ H I P+ V++ I ++++  ++  
Sbjct: 543 NLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAVVPG 602

Query: 741 AATTNISIDAQQLSLSKKKGK------------AHLKSLRKQMHLAADNLNFEEAARIRD 788
           A      +      ++++ G+              ++ L ++M+  A +L FE AA++RD
Sbjct: 603 ARGKRKGV----AKVAEESGRYENELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRD 658

Query: 789 EIKRLK 794
           EI+ L+
Sbjct: 659 EIQTLR 664


>gi|254428046|ref|ZP_05041753.1| excinuclease ABC, B subunit [Alcanivorax sp. DG881]
 gi|196194215|gb|EDX89174.1| excinuclease ABC, B subunit [Alcanivorax sp. DG881]
          Length = 671

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/670 (56%), Positives = 484/670 (72%), Gaps = 22/670 (3%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++ +DY P+GDQP AIAQL++GI      Q LLGVTGSGKTFTMA VIE   RP I+
Sbjct: 4   SLFKLHSDYQPAGDQPKAIAQLIEGIDDGLGHQTLLGVTGSGKTFTMANVIEQTGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY EF+ FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NEQI++M
Sbjct: 64  MAPNKTLAAQLYGEFREFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEQIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D I+V++VS IYG+G   SY  M++ L  GD ++Q+ELL  L + QY 
Sbjct: 124 RLSATKAILERPDTIIVATVSAIYGLGDPASYHAMVLHLVRGDHIDQRELLRRLAELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R ++   R T+RV GD I+IFP+  E  A R+ +F +++E IS F PLTG+ IR +    
Sbjct: 184 RNEMDFRRATYRVRGDVIDIFPAEEEKEAVRIELFDDEVESISIFDPLTGEVIRRIGRTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYVTPR T+  A++ IKEEL  RL EL+++ +L+EAQRLEQR  +D+EML+  G 
Sbjct: 244 IYPKSHYVTPRETVLKAVEMIKEELTERLAELKEQNKLVEAQRLEQRTRFDIEMLQELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  +ENYSR  +GR PG+ PPTLF+Y+P+++LL  DESHVTIPQ+  MY+GD  RK TL 
Sbjct: 304 CNGVENYSRLFSGRAPGDAPPTLFDYLPDNALLIADESHVTIPQLGAMYKGDRSRKETLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            +GFRLPS MDNRPL+FEEW  L P  + VSATPG +E ++  G +VEQ++RPTGLVDP 
Sbjct: 364 SFGFRLPSAMDNRPLKFEEWEQLAPQMVFVSATPGPYE-QKYAGQVVEQVVRPTGLVDPK 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR A TQV+D+  E      +  R+L+T LTKRMAEDLTEYL E  IRVRY+HS++ T
Sbjct: 423 IEIRPATTQVDDLLGEAKECIAKEQRVLVTTLTKRMAEDLTEYLNEHGIRVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSDRSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-- 736
           ARNV  + ILYAD +T S++ AI ET RRREKQ   NK + I PQ + +KI +++D    
Sbjct: 543 ARNVEGRAILYADKMTGSMERAIGETDRRREKQEAFNKANGITPQGLNKKIRDIMDDSGG 602

Query: 737 ------------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
                       + E AA     +DA+  +   K+    +K L  +M   A NL FE+AA
Sbjct: 603 SRFDRKYKGEKKVAESAAD---YLDARSPAQVAKE----IKVLEAKMLEHAKNLEFEDAA 655

Query: 785 RIRDEIKRLK 794
             RD+I +L+
Sbjct: 656 ATRDKIHQLR 665


>gi|153838169|ref|ZP_01990836.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus AQ3810]
 gi|149748428|gb|EDM59287.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus AQ3810]
          Length = 676

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/669 (55%), Positives = 496/669 (74%), Gaps = 17/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ ++Y PSGDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRPAI++A
Sbjct: 5   YELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  ESY QM++ L+ GD ++Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF ++++ IS F PLTG  K R++    I
Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRYTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R  +L +  +L+E QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+  L P TI VSATPG++EL++  G I +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELDKSAGEIADQVVRPTGLLDPIL 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K ILYAD+ITKS++ A+DET RRREKQ  +N+K  I PQ++K  I ++++   L 
Sbjct: 545 RNIEGKAILYADSITKSMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D   +    + +Q+ LSK             ++ +  +  L   M+  A +L FE AA  
Sbjct: 602 DITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEISRLEAAMYQHAQDLEFELAAEK 661

Query: 787 RDEIKRLKS 795
           RDEI++L++
Sbjct: 662 RDEIEKLRA 670


>gi|21231919|ref|NP_637836.1| excinuclease ABC subunit B [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767952|ref|YP_242714.1| excinuclease ABC subunit B [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|23822293|sp|Q8P7X1|UVRB_XANCP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|81306071|sp|Q4UW79|UVRB_XANC8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|21113646|gb|AAM41760.1| excinuclease ABC subunit B [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573284|gb|AAY48694.1| excinuclease ABC subunit B [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 673

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/669 (55%), Positives = 490/669 (73%), Gaps = 16/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FELVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L IG+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G I E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEITELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E++   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV   I ++++    ED
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVARPISDIMEGA-RED 603

Query: 741 AATTNIS-------------IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           AA                   D + +  ++  GK  LK+L ++M+  A +L FE AA+IR
Sbjct: 604 AAEKKAGKGRSKSRQVAEEPADYRAMGPAEIAGK--LKALEQKMYQHAKDLEFEAAAQIR 661

Query: 788 DEIKRLKSS 796
           D+I +LK++
Sbjct: 662 DQILKLKAA 670


>gi|289665218|ref|ZP_06486799.1| excinuclease ABC subunit B [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 673

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/669 (55%), Positives = 492/669 (73%), Gaps = 16/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FRLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQHVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L +G+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G + E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI+   + G R+L+T LTKRM+E+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEIHERIKLGDRVLVTTLTKRMSENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV+  I ++++    ED
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPISDIMEGA-RED 603

Query: 741 AA-------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           A                  + D + +  ++  GK  LKSL ++M+  A +L FE AA+IR
Sbjct: 604 AVEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGK--LKSLEQKMYQHAKDLEFEAAAQIR 661

Query: 788 DEIKRLKSS 796
           D+I++LK++
Sbjct: 662 DQIQKLKAA 670


>gi|224826639|ref|ZP_03699740.1| excinuclease ABC, B subunit [Lutiella nitroferrum 2002]
 gi|224601240|gb|EEG07422.1| excinuclease ABC, B subunit [Lutiella nitroferrum 2002]
          Length = 670

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/662 (56%), Positives = 482/662 (72%), Gaps = 1/662 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQPAAIAQL++G+      Q LLGVTGSGKTFTMA VI    RPAI+MA
Sbjct: 10  FKLHQPFPPAGDQPAAIAQLVEGLSDGLSYQTLLGVTGSGKTFTMANVIARTGRPAIIMA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++MR 
Sbjct: 70  HNKTLAAQLYSEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER DC++V++VS IYGIG    Y QMI+ LK G+++ Q++++  LV  QY+R 
Sbjct: 130 SATKSLLERPDCVIVATVSAIYGIGDPSDYHQMILHLKEGETIAQRDIIGRLVAMQYERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD I+IFP+   ++A RVS+F +++E ++ F PLTG   + V    ++
Sbjct: 190 DLDFTRGTFRVRGDVIDIFPAESAELALRVSLFDDELETLTLFDPLTGVTRQRVGRFTVF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IK EL+ R+   + EG+L+EAQR+EQR  +DLEML   G C+
Sbjct: 250 PSSHYVTPRDTVLRACEKIKLELRERVDFYQHEGKLVEAQRIEQRTRFDLEMLYEMGFCK 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +GR PGEPPPTL +Y+P+++L+F+DESHVTIPQI GMY+GD  RK  L +Y
Sbjct: 310 GIENYSRHFSGRGPGEPPPTLIDYLPKNALMFIDESHVTIPQIGGMYKGDAARKLNLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ +SATP  +E     G +VEQ++RPTGL+DP +E
Sbjct: 370 GFRLPSAADNRPLKFNEFERMMPQTVFISATPADYEAGHA-GQVVEQVVRPTGLIDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   +QV+D+  EI L      R+L+T LTKRMAE L +Y  E  ++VRY+HS++ T+E
Sbjct: 429 IRPVASQVDDLLSEITLRVGSNERVLVTTLTKRMAEQLADYYTEHGVKVRYLHSDIDTVE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 489 RVEIIRDLRLGMFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ K ILYAD IT S++ AIDET RRR KQ+  N +H I P+ V++KI ++ID +   +
Sbjct: 549 NLHGKAILYADRITNSMRRAIDETERRRTKQIAFNTEHGIVPKGVEKKIKDIIDGVYSAE 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
           A    +  DA+   + +K     +K L K M  AA NL FE+AA +RD++K LK   +  
Sbjct: 609 AEKKKLVDDARVAMMDEKALAKEIKRLEKDMLEAARNLEFEKAAGLRDQLKALKEKAWIN 668

Query: 801 GL 802
            L
Sbjct: 669 EL 670


>gi|15598334|ref|NP_251828.1| excinuclease ABC subunit B [Pseudomonas aeruginosa PAO1]
 gi|107102687|ref|ZP_01366605.1| hypothetical protein PaerPA_01003752 [Pseudomonas aeruginosa PACS2]
 gi|218890661|ref|YP_002439525.1| excinuclease ABC subunit B [Pseudomonas aeruginosa LESB58]
 gi|12644339|sp|P72174|UVRB_PSEAE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|9949251|gb|AAG06526.1|AE004737_12 excinuclease ABC subunit B [Pseudomonas aeruginosa PAO1]
 gi|218770884|emb|CAW26649.1| excinuclease ABC subunit B [Pseudomonas aeruginosa LESB58]
          Length = 670

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/666 (55%), Positives = 485/666 (72%), Gaps = 17/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +V+A
Sbjct: 4   FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G   SY +M++ L  GD ++Q+ELL  L   QY R 
Sbjct: 124 SATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+IFP+  +  A RV +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A+  IK ELK RL  L    +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+  M++GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW  + P TI VSATPG +E E   G ++EQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  +I     +  R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ T+E
Sbjct: 423 VRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ K ILYAD +T S+Q AIDET RRR KQ+  N+ H I P+ V++ I ++++  ++  
Sbjct: 543 NLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAVVPG 602

Query: 741 AATTNISIDAQQLSLSKKKGK------------AHLKSLRKQMHLAADNLNFEEAARIRD 788
           A      +      ++++ G+              ++ L ++M+  A +L FE AA++RD
Sbjct: 603 ARGKRKGV----AKVAEESGRYENELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRD 658

Query: 789 EIKRLK 794
           EI+ L+
Sbjct: 659 EIQTLR 664


>gi|240948695|ref|ZP_04753067.1| excinuclease ABC subunit B [Actinobacillus minor NM305]
 gi|240296911|gb|EER47489.1| excinuclease ABC subunit B [Actinobacillus minor NM305]
          Length = 671

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/661 (57%), Positives = 490/661 (74%), Gaps = 8/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP AIA+L++G++     Q LLGVTGSGKTFT+A VI  + RPA+V+A
Sbjct: 8   FILHSPFKPSGDQPTAIAKLVEGLNDGLAHQTLLGVTGSGKTFTIANVIATLNRPAMVLA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR 
Sbjct: 68  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQIEQMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G+ ++Q+++LS L + QY R 
Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGEMIDQRKILSRLAELQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+  +DVA RV +F ++IE +S F PLTG  +  V    IY
Sbjct: 188 DQAFQRATFRVRGEVIDIFPAESDDVALRVELFDDEIENLSLFDPLTGHSLGRVPRYTIY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IKEEL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 248 PKTHYVTPRERILEAIEQIKEELAERRTYFIKENKLLEEQRIAQRTQFDIEMMNELGYCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GM+RGD  RK TL +Y
Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPSDGLLIIDESHVTVPQIGGMFRGDRARKETLVQY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+   +I +Q++RPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLRFEEFERLSPQTIYVSATPGPYELEKNPDVI-DQVVRPTGLLDPIIE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS++ T+E
Sbjct: 427 VRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 487 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D I   D
Sbjct: 547 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIVPQALNKKVGELLD-IGQTD 605

Query: 741 ----AATTNISIDAQQLSL--SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               +  +  S D Q   +  S+K+ +  LK L +QM   A +L FE+AA +RD+I  LK
Sbjct: 606 KPKRSKKSAKSTDNQTAYIPKSRKELEKELKVLEQQMRDFAKDLEFEKAAAVRDKIGVLK 665

Query: 795 S 795
           +
Sbjct: 666 A 666


>gi|332528395|ref|ZP_08404389.1| excinuclease ABC subunit B [Hylemonella gracilis ATCC 19624]
 gi|332042158|gb|EGI78490.1| excinuclease ABC subunit B [Hylemonella gracilis ATCC 19624]
          Length = 710

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/691 (54%), Positives = 496/691 (71%), Gaps = 7/691 (1%)

Query: 120 GKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGS 179
           G + TP  S +    S   + F++   Y PSGDQP AI +L++G++  E  Q LLGVTGS
Sbjct: 18  GALATPVESAAGQFVSFPGSPFELFQPYPPSGDQPEAINRLVEGVNDGEVFQTLLGVTGS 77

Query: 180 GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239
           GKT+TMA VI  + RPAI+ APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP
Sbjct: 78  GKTYTMANVIARLGRPAIIFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVP 137

Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
           + D +IEK+S+INE I+++R S T+SLLER D ++V++VS IYGIG  E Y QMI+ L+ 
Sbjct: 138 QRDLFIEKDSAINEHIEQLRLSCTKSLLERRDVVIVATVSAIYGIGKPEDYHQMILTLRA 197

Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359
           GD + Q+++++ LV+ QY+R D+   RGTFRV GD++++FP+   ++A R+ +F ++IE 
Sbjct: 198 GDKLGQRDVIAQLVRMQYQRNDMDFSRGTFRVRGDTVDVFPAEHSELALRIELFDDEIEN 257

Query: 360 ISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419
           +  F PLTG+  + +    +Y +SHYVTPR  +  A++ IK EL  R+ E    G+L+EA
Sbjct: 258 LQLFDPLTGRIKQKISRFTVYPSSHYVTPREQVLKAVETIKVELVDRVKEFVDAGKLVEA 317

Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT 479
           QRLEQR  +DLEML   G C+ IENY+R+L+G  PG+PPPTL +Y+P D+L+F+DESHV 
Sbjct: 318 QRLEQRTRFDLEMLSEVGHCKGIENYTRHLSGARPGDPPPTLTDYLPRDALMFLDESHVM 377

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           I Q+ GMY GD  RK TL EYGFRLPS +DNRPL+FEE+       I VSATPG WE   
Sbjct: 378 IGQLGGMYNGDRARKTTLVEYGFRLPSALDNRPLKFEEFETKMRQAIFVSATPGDWEKTH 437

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
             G +VEQ++RPTGL+DP VE+R A  QV+DV  EI L  ++  R+L+TVLTKRMAE LT
Sbjct: 438 T-GAVVEQLVRPTGLIDPEVEVRPALHQVDDVLQEIRLRVERHERVLITVLTKRMAEQLT 496

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           +YL E  ++VRY+HS+V T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDA
Sbjct: 497 DYLTENGVKVRYLHSDVDTVERVEILRDLRLGSFDVLVGINLLREGLDIPEVSLVAILDA 556

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
           DKEGFLRS+ SLIQTIGRAARN+  K ILYAD IT S++ A+ ET RRR KQL HN +H 
Sbjct: 557 DKEGFLRSERSLIQTIGRAARNLRGKAILYADRITDSMKRALGETERRRAKQLAHNTEHG 616

Query: 720 INPQSVKEKIMEVIDPILLEDAATTNISID------AQQLSLSKKKGKAHLKSLRKQMHL 773
           I P+++ +++ ++ID +  E A   +  ++      AQ   +S+K     +K L KQM  
Sbjct: 617 ITPRAIVKQVRDLIDGVYSEKAGRESERLEREAMARAQVEDMSEKDIAREIKRLEKQMLE 676

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
            A NL FE+AA+ RD++  LK+  +   + D
Sbjct: 677 HAKNLEFEQAAKTRDQLTLLKARAFGAAVPD 707


>gi|221135472|ref|ZP_03561775.1| excinuclease ABC subunit B [Glaciecola sp. HTCC2999]
          Length = 672

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/663 (55%), Positives = 489/663 (73%), Gaps = 9/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+ Y P+GDQP AIA L++GI      Q LLGVTGSGKTFTMA VIE++QRP +++A
Sbjct: 5   FELQSKYSPAGDQPTAIASLVEGIEDGLACQTLLGVTGSGKTFTMANVIESVQRPTLILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SSIN+ I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++++SVS IYG+G  +SY +M++ L+ GD+++Q+++L  L + QYKR 
Sbjct: 125 SATKALMERRDVVIIASVSAIYGLGDPKSYMKMLLHLRQGDTMDQRDILRRLAELQYKRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD I+IFP+  E  A RV +F  +IE+IS F PLTG   + V    ++
Sbjct: 185 DVAFERGNFRVRGDVIDIFPADSEKQAVRVELFDEEIEQISLFDPLTGAVDKKVTRATVF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK EL  R  +L++  +L+E QR+ QR  +D+EM+   G C 
Sbjct: 245 PKTHYVTPREKILDAIERIKTELVSRKDQLKESNKLIEEQRISQRTQFDIEMMLELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTL +Y P+D LL +DESHVT+ QI  MY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRAPGEPPPTLIDYFPKDGLLMIDESHVTVSQIGAMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  + P TI VSATPG  ELE+C G +VEQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEHIAPQTIYVSATPGKHELERCAGDVVEQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+DV  EI+       R+L+T LTKRMAEDL+EYL E  ++VRY+HS++ T+E
Sbjct: 425 IRPVATQVDDVLSEIHKRVAVNERVLITTLTKRMAEDLSEYLNENGVKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+GKFDV+VGINLLREGLD+PE  LVAILDADKEGFLR+  SLIQTIGRAAR
Sbjct: 485 RIEIIRDLRIGKFDVIVGINLLREGLDMPEVSLVAILDADKEGFLRADKSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++N + ILY D IT S+Q AIDET RRR+KQ+EHN+ H I PQ++ + I +++D +  + 
Sbjct: 545 HLNGRAILYGDKITGSMQRAIDETDRRRKKQIEHNELHGIVPQALNKPITDIMD-VGDDS 603

Query: 741 AATTNISIDAQQLSLSKKKGKA--------HLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           A   +  +  ++++  +K  +          +  L K M  AA  L FE+AA +RD+I++
Sbjct: 604 AHPASGKVKLRKIAEKEKTYQKMTATQMMDKVAELEKTMFEAARELEFEKAASLRDDIEK 663

Query: 793 LKS 795
           L+S
Sbjct: 664 LRS 666


>gi|262274535|ref|ZP_06052346.1| excinuclease ABC subunit B [Grimontia hollisae CIP 101886]
 gi|262221098|gb|EEY72412.1| excinuclease ABC subunit B [Grimontia hollisae CIP 101886]
          Length = 674

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/668 (56%), Positives = 483/668 (72%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + + PSGDQP AI QLL+G+ +    Q LLGVTGSGKT+TMA VI    RP +++A
Sbjct: 5   FQLHSPFKPSGDQPTAINQLLEGLDAGLAHQTLLGVTGSGKTYTMANVIAKAGRPTMILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E + FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE +++MR 
Sbjct: 65  PNKTLAAQLYGEMRAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHVEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++V+SVS IYG+G  +SY +M++ L+ GD +EQ+ +L  L + QY R 
Sbjct: 125 SATKALMERRDVVIVASVSAIYGLGDPDSYLKMMLHLRRGDMIEQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D    RGTFRV G+ I+IFP+  +  A R+ +F +++E IS F PLTG    RN+    I
Sbjct: 185 DQAFTRGTFRVRGEVIDIFPAESDRDAIRIELFDDEVECISVFDPLTGAISERNLPRCTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IKEEL  R   L +  +LLE QR+ QR  +DLEM++  G C
Sbjct: 245 YPKTHYVTPREKILDAIEKIKEELADRKRVLLENNKLLEEQRISQRTMFDLEMMQELGYC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGREEGEPPPTLFDYLPADGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+F+E+  L P TI VSATPG +ELE+  G + EQ++RPTGL+DP V
Sbjct: 365 YGFRLPSALDNRPLKFDEFEALAPQTIYVSATPGKYELEKSGGEVAEQVVRPTGLLDPEV 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI +  Q   R+L+T LTKRMAEDLTEYL E ++RVRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRTQLNERVLVTTLTKRMAEDLTEYLEEHDVRVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----- 734
           RN+  K ILY DTIT S+Q AI+ET RRR KQ  HN+KH I PQ + +K+ +V++     
Sbjct: 545 RNLAGKAILYGDTITGSMQRAIEETERRRAKQQAHNEKHGIVPQKLSKKVADVLELGGKR 604

Query: 735 -------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                  P  L+  A      DA  +  S ++ +A ++ L  QM+ AA NL FE AA +R
Sbjct: 605 RSHKPKVPASLKAVAED----DAAYVVRSPQQIEAQIQKLEAQMYEAAQNLEFETAAGLR 660

Query: 788 DEIKRLKS 795
           DEI  L++
Sbjct: 661 DEIAALRA 668


>gi|152985171|ref|YP_001347370.1| excinuclease ABC subunit B [Pseudomonas aeruginosa PA7]
 gi|150960329|gb|ABR82354.1| excinuclease ABC, B subunit [Pseudomonas aeruginosa PA7]
          Length = 670

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/666 (55%), Positives = 485/666 (72%), Gaps = 17/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +V+A
Sbjct: 4   FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G   SY +M++ L  GD ++Q+ELL  L   QY R 
Sbjct: 124 SATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+IFP+  +  A RV +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A+  IK ELK RL  L    +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+  M++GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW  + P TI VSATPG +E E   G ++EQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  +I     +  R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ T+E
Sbjct: 423 VRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRSGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ K ILYAD +T S+Q AIDET RRR KQ+  N+ H I P+ V++ I ++++  ++  
Sbjct: 543 NLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAVVPG 602

Query: 741 AATTNISIDAQQLSLSKKKGK------------AHLKSLRKQMHLAADNLNFEEAARIRD 788
           A      +      ++++ G+              ++ L ++M+  A +L FE AA++RD
Sbjct: 603 ARGKRKGV----AKVAEESGRYDNELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRD 658

Query: 789 EIKRLK 794
           EI+ L+
Sbjct: 659 EIQTLR 664


>gi|254229839|ref|ZP_04923244.1| excinuclease ABC, B subunit [Vibrio sp. Ex25]
 gi|262393723|ref|YP_003285577.1| excinuclease ABC subunit B [Vibrio sp. Ex25]
 gi|151937608|gb|EDN56461.1| excinuclease ABC, B subunit [Vibrio sp. Ex25]
 gi|262337317|gb|ACY51112.1| excinuclease ABC subunit B [Vibrio sp. Ex25]
          Length = 676

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/669 (55%), Positives = 494/669 (73%), Gaps = 17/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ +DY PSGDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRPAI++A
Sbjct: 5   YELVSDYQPSGDQPGAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  ESY QM++ L+ GD ++Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF ++I+ IS F PLTG  K R++    I
Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEIDCISVFDPLTGVVKQRDLPRYTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R  +L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRDRILEAIENIKVELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRLEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G + +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSAGDVADQVVRPTGLLDPEL 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI L + +  R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRLRSAKDERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K ILYAD IT S++ A+DET RRREKQ  +N++  I+PQ++K  I ++++   L 
Sbjct: 545 RNLEGKAILYADRITNSMKKAMDETNRRREKQKAYNEEMGISPQALKRNIKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D   +    + +Q+ LSK             ++ +  +  L   M+  A +L FE AA+ 
Sbjct: 602 DITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEISRLEAAMYQHAQDLEFELAAQK 661

Query: 787 RDEIKRLKS 795
           RDEI++L++
Sbjct: 662 RDEIEKLRA 670


>gi|120553961|ref|YP_958312.1| excinuclease ABC subunit B [Marinobacter aquaeolei VT8]
 gi|120323810|gb|ABM18125.1| Excinuclease ABC subunit B [Marinobacter aquaeolei VT8]
          Length = 685

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/674 (55%), Positives = 487/674 (72%), Gaps = 14/674 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIA L+ GI S    Q LLGVTGSGKTFT+A V++ +QRP I+MA
Sbjct: 13  FRVDSPYQPAGDQPKAIAGLVDGIESGLAHQTLLGVTGSGKTFTIANVVQQVQRPTIIMA 72

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR 
Sbjct: 73  HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEHIEQMRL 132

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G  +SY +M++ L  GD ++Q+ +L  L + QY R 
Sbjct: 133 SATKALLERPDAIIVATVSSIYGLGDPQSYLKMMLHLDRGDQMDQRYILRRLAELQYTRN 192

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   R  +RV GD I++FP+  +  A R+ +F +++E +S F PLTG+ +R V  + IY
Sbjct: 193 DIEFHRANYRVRGDVIDVFPAESQKEAIRIELFDDEVENLSYFDPLTGEVLRRVPRVTIY 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR T+  A++ IK+EL +RL +L    RL+EAQRLE+R  YD+EM+   G C 
Sbjct: 253 PKSHYVTPRQTVLDAVEDIKQELDVRLQQLRDNNRLVEAQRLEERTRYDIEMMLELGYCN 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRNPGE PPTL++Y+P ++LL VDESHVTIPQI  MY+GD  RK TL EY
Sbjct: 313 GIENYSRYLSGRNPGEAPPTLYDYLPPNALLVVDESHVTIPQIGAMYKGDRSRKETLVEY 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEEW  + P  I VSATPG++E E   G +VEQ++RPTGL+DP +E
Sbjct: 373 GFRLPSALDNRPMRFEEWERIAPQMIFVSATPGNYEAEHA-GQVVEQVVRPTGLLDPEIE 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI+       R+L+T LTKRMAEDLT++L E +IRVRY+HS++ T+E
Sbjct: 432 VRPASTQVDDLLSEIHQRVGVNERVLVTTLTKRMAEDLTDFLMEHDIRVRYLHSDIDTVE 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 492 RVEIIRDLRRGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           NVN K ILY D IT S+Q AIDET RRR KQ+ HN++H I P  + +KI ++++      
Sbjct: 552 NVNGKAILYGDRITGSMQRAIDETERRRAKQMAHNEEHGITPIGLNKKIADIMEGAAGGG 611

Query: 739 -----------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                      + AA        +  + S +     +  L  +M+ AA +L+FE AAR+R
Sbjct: 612 GRGRRKAERPGQKAAEEAEDYRVKVGNRSPEDVLKEVAKLEDEMYKAAADLDFETAARLR 671

Query: 788 DEIKRLKSSPYFQG 801
           D+I  LK +    G
Sbjct: 672 DQISELKEAALRTG 685


>gi|262373065|ref|ZP_06066344.1| excinuclease ABC, B subunit [Acinetobacter junii SH205]
 gi|262313090|gb|EEY94175.1| excinuclease ABC, B subunit [Acinetobacter junii SH205]
          Length = 674

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/666 (56%), Positives = 485/666 (72%), Gaps = 14/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T+Y P+GDQP AI +L+KGI    + QLLLGVTGSGKT+TMA VI   QRP IVMA
Sbjct: 7   FDLVTNYQPAGDQPQAIEKLVKGIEQGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR 
Sbjct: 67  HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAINDHIDQMRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V + +++  LV+ QY R 
Sbjct: 127 SATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHIVQGDRVSRDDIIRRLVEMQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++  +RGT+R+ G+ I+IFP+  +  A RV +F ++++ I  F PLTG+ +R V  + IY
Sbjct: 187 ELEFLRGTYRIRGEIIDIFPAESDQDAIRVELFDDEVDSIRWFDPLTGKLVRKVPRVTIY 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  L  A+  IK+ELK +L   +   +LLEAQR+EQR  YDLEM++  G   
Sbjct: 247 PKSHYVTPKDHLTRAIDTIKDELKDQLKFFKDNDKLLEAQRIEQRTRYDLEMMQQLGYTN 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GE PPTLF+YIPED+LL +DESHVT+PQI  MY+GD  RK  L  Y
Sbjct: 307 GIENYSRHLSGRGAGEAPPTLFDYIPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEEW  + PTT+ VSATP  +ELE+ +  IVEQ++RPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPMKFEEWERIVPTTVFVSATPAQYELEKSEQ-IVEQVVRPTGLIDPEIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EIN+  Q   R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T+E
Sbjct: 426 VRPVLTQVDDVLSEINIRKQVNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G  DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 486 RVKIIHELRTGVHDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS-VKEKIMEV------- 732
           NV  K ILYAD IT S++ A+DET RRR KQ+E N+ H I P+S V++ I E+       
Sbjct: 546 NVKGKAILYADRITDSMRKAMDETERRRNKQIEFNELHGITPRSAVRQTIKEIDTGEVLS 605

Query: 733 ---IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
              ID  +LE A +  IS D Q L    K    H+  L K+M  A+  L FE+AAR+RDE
Sbjct: 606 DDEIDEKVLEQAQS--ISADEQHLLSDPKLFAKHISKLEKEMLKASKELQFEQAARLRDE 663

Query: 790 IKRLKS 795
           I R+K+
Sbjct: 664 IVRMKA 669


>gi|5870855|gb|AAD46146.2|AF102847_1 excinuclease ABC subunit B [Xanthomonas campestris pv. campestris]
          Length = 673

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/669 (55%), Positives = 490/669 (73%), Gaps = 16/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FELVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L IG+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G I E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEITELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E++   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLRE LD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREALDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV   I ++++    ED
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVARPISDIMEGA-RED 603

Query: 741 AATTNIS-------------IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           AA                   D + +  ++  GK  LK+L ++M+  A +L FE AA+IR
Sbjct: 604 AAEKKAGKGRSKSRQVAEEPADYRAMGPAEIAGK--LKALEQKMYQHAKDLEFEAAAQIR 661

Query: 788 DEIKRLKSS 796
           D+I++LK++
Sbjct: 662 DQIQKLKAA 670


>gi|327481721|gb|AEA85031.1| excinuclease ABC subunit B [Pseudomonas stutzeri DSM 4166]
          Length = 671

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/663 (55%), Positives = 488/663 (73%), Gaps = 10/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ T + P+GDQP AI Q+++GI +    Q LLGVTGSGKTF++A VI  +QRP +V+A
Sbjct: 4   FELVTRFKPAGDQPEAIRQMIEGIEAGLSHQTLLGVTGSGKTFSIANVIAHVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+G  +SY +M++ +  GD ++Q+ELL  L   QY R 
Sbjct: 124 SATKALLERPDAIIVTTVSCIYGLGDPQSYLKMVLHVDRGDRLDQRELLRRLTGLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+IFP+  +  A R+ +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAVRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A++ IK+EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLLDAVEKIKDELRERLDYLRSQNKLVEAQRLEQRTRFDLEMIMELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR+ GEPPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRDAGEPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG +E E   G +VEQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPMRFDEWEAICPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDPQIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI     +  R+L+T LTKRM+EDLT+YL + +++VRY+HS++ T+E
Sbjct: 423 VRPALTQVDDLLSEIRKCVAKEERVLVTTLTKRMSEDLTDYLGDHDVKVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD IT S+Q AIDET RRR KQ+  N+ H I P+ VK+ + ++++   +  
Sbjct: 543 NLNGRAILYADNITGSMQRAIDETERRRAKQIAFNEAHGIVPKGVKKDVQDILEGATVPG 602

Query: 741 AATTNISIDAQQLSLSKK---------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           + +     +A+    S +         +    ++ L ++M L A +L FE AA  RDEI 
Sbjct: 603 SRSKKRRGEAKAAEESARYESELRSPSEITKRIRQLEEKMLLLARDLEFEAAAEARDEIH 662

Query: 792 RLK 794
           +L+
Sbjct: 663 KLR 665


>gi|255320767|ref|ZP_05361942.1| excinuclease ABC subunit B [Acinetobacter radioresistens SK82]
 gi|262379457|ref|ZP_06072613.1| excinuclease ABC, B subunit [Acinetobacter radioresistens SH164]
 gi|255302144|gb|EET81386.1| excinuclease ABC subunit B [Acinetobacter radioresistens SK82]
 gi|262298914|gb|EEY86827.1| excinuclease ABC, B subunit [Acinetobacter radioresistens SH164]
          Length = 673

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/666 (56%), Positives = 487/666 (73%), Gaps = 14/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ T Y P+GDQP AI +L+KGI    K QLLLGVTGSGKT+TMA VI   QRP IVMA
Sbjct: 7   FELVTQYAPAGDQPQAIEKLVKGIQQGYKSQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR 
Sbjct: 67  HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D I+V+SVS IYG+G  E+Y +M++ +  GD V + +++  LV+ QY R 
Sbjct: 127 SATRSLLERRDAIIVASVSAIYGLGDPEAYMKMLLHIVQGDRVGRDDIIRRLVEMQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++  +RGT+R+ G+ ++IFP+  E  A R+ +F ++++ I  F PLTG+ +R V  + IY
Sbjct: 187 ELEFVRGTYRIRGEIMDIFPAESEQNAIRIELFDDEVDSIRWFDPLTGKMLRKVPRVTIY 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  L  A+  I++ELK +L    +  +LLEAQR+EQR  YDLEM++  G   
Sbjct: 247 PKSHYVTPKDNLVRAIDTIRDELKDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTN 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PG+ PPTLF+Y+P+D+LL +DESHVT+PQI  MY+GD  RK  L  Y
Sbjct: 307 GIENYSRHLSGRRPGDAPPTLFDYVPDDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEEW  + PTT+ VSATP  +ELE+ +  +VEQ++RPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPMKFEEWERIIPTTVFVSATPARYELEKSEQ-VVEQVVRPTGLIDPEIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+DV  EIN+      R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T+E
Sbjct: 426 IRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTAYLKEYGVKVAYLHSDIDTVE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 486 RVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--ILL 738
           N+  K ILYAD IT S+Q AIDET RRR KQ+E N+ H I P+S   ++++ ID   +L 
Sbjct: 546 NIKGKAILYADRITDSMQKAIDETERRRNKQIEFNELHGIIPRSAVRQVIKEIDTGEVLA 605

Query: 739 EDAATTNISIDAQQLSLSK---------KKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           ED     I+  AQ LSL+          K    H+  L K+M  A+  L FE+AAR+RDE
Sbjct: 606 EDEIDEKIT--AQALSLTADERHILADPKLLSKHMAKLEKEMLKASKELQFEQAARLRDE 663

Query: 790 IKRLKS 795
           I RLK+
Sbjct: 664 ILRLKA 669


>gi|301156422|emb|CBW15893.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Haemophilus parainfluenzae T3T1]
          Length = 678

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/673 (55%), Positives = 487/673 (72%), Gaps = 30/673 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ PSGDQP AI +L++ +      Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 10  FILHSDFKPSGDQPQAIEKLVENLEDGLAHQTLLGVTGSGKTFTIANVIATLNRPAMLLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 70  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + QY R 
Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V    +Y
Sbjct: 190 DQAFQRGTFRVRGEVIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGTSFGAVPRFTVY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK EL        KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 250 PKTHYVTPRERILDAIEKIKAELVQGREYFIKEHKLLEEQRITQRTQFDIEMMNELGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    IV+Q++RPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGTEIVDQVVRPTGLLDPQIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD+ITKS++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D      
Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQMKYNEEHGIVPQALNKKVGELLD------ 603

Query: 741 AATTNISIDAQQLSLSKKKGKA-------------------HLKSLRKQMHLAADNLNFE 781
                I   A Q + SK++GK                     +K L +QM+  A +L FE
Sbjct: 604 -----IGQGANQKAKSKQRGKTAAEPTALYNTPKSAKEFQQQIKKLEQQMYKFAQDLEFE 658

Query: 782 EAARIRDEIKRLK 794
           +AA +RD++ +L+
Sbjct: 659 KAAAVRDQLHQLR 671


>gi|315634006|ref|ZP_07889295.1| excision endonuclease subunit UvrB [Aggregatibacter segnis ATCC
           33393]
 gi|315477256|gb|EFU67999.1| excision endonuclease subunit UvrB [Aggregatibacter segnis ATCC
           33393]
          Length = 680

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/673 (55%), Positives = 488/673 (72%), Gaps = 15/673 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ PSGDQP AIA+L + +      Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 10  FILHSDFKPSGDQPQAIAKLAENLEDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 70  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  + Q+++L+ L + QY R 
Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIINQRQILAKLAELQYTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A R+ +F ++IE +S F PLTG     V    +Y
Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDERAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTVY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 250 PKTHYVTPRERILDAIEKIKVELAQRREYFIKENKLLEEQRISQRTQFDIEMMNELGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR+ GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 310 GIENYSRYLSGRDEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGAEIIDQVVRPTGLLDPQIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD+ITKS++ AI ET RRREKQ ++N+ H I PQ++ +K+ E++D   +  
Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQTKYNEDHGIVPQALNKKVGELLD---IGQ 606

Query: 741 AATTNISIDAQQ------------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            A      + Q+            +  S K+ +  +K L +QM+  A +L FE+AA +RD
Sbjct: 607 GANQKAKANKQRGKMVAEPTALYTVPTSPKEYQQQIKKLEQQMYKFAQDLEFEKAAAVRD 666

Query: 789 EIKRLKSSPYFQG 801
           ++++L+ S    G
Sbjct: 667 QLQQLRESFMLSG 679


>gi|257454228|ref|ZP_05619498.1| excinuclease ABC subunit B [Enhydrobacter aerosaccus SK60]
 gi|257448401|gb|EEV23374.1| excinuclease ABC subunit B [Enhydrobacter aerosaccus SK60]
          Length = 705

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/667 (56%), Positives = 487/667 (73%), Gaps = 20/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M T++ PSGDQP AIA+L+ G+      QLLLGVTGSGKT+TMAKVI   QRP I+MA
Sbjct: 41  FEMVTEFEPSGDQPQAIAKLVDGVDKGMHGQLLLGVTGSGKTYTMAKVIAQCQRPTIIMA 100

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR 
Sbjct: 101 HNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSAINDHIDQMRL 160

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+++SVSCIYG+G  ESY +M++ + +GD +++  +L  LV+ QY R 
Sbjct: 161 SATRALLERRDAIIIASVSCIYGLGDPESYLKMLLHIVVGDKIDRTAMLKRLVELQYTRN 220

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGT+R+ G+ ++I+P+  E +A R+SMF +++E+I+ F PLTG+ +R+V  I IY
Sbjct: 221 ELDFGRGTYRLRGEVLDIYPAESEQLAVRISMFDDEVEKITWFDPLTGKNVRSVPRITIY 280

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  L  A   IK EL+ RL       +L+EAQR+++R TYDLEM++  G C 
Sbjct: 281 PKSHYVTPRDKLERASGTIKAELEQRLEYFRAHDKLIEAQRIKERTTYDLEMIQQLGYCN 340

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GE PPTLF+YIP D+LLF+DESHVT+PQ+  MY+GD  RK TL  Y
Sbjct: 341 GIENYSRHLSGRPAGEAPPTLFDYIPPDALLFIDESHVTVPQVGAMYKGDRSRKETLVNY 400

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL FEEW  + P+T+ VSATP  +ELE  +  IVEQ++RPTGLVDP +E
Sbjct: 401 GFRLPSAMDNRPLMFEEWERITPSTVYVSATPAQYELEHSEQ-IVEQVVRPTGLVDPILE 459

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+DV  EIN+   +  R+L+T LTKRMAEDLT YL E NI+V Y+HS++ T+E
Sbjct: 460 IRPVLTQVDDVLSEINIRKAKDERVLITTLTKRMAEDLTGYLKEYNIKVAYLHSDIDTVE 519

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G  DVLVGINLLREGLD+PE  LVAI DADKEGFLRS+ SLIQTIGRAAR
Sbjct: 520 RMKIIHELRTGVHDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERSLIQTIGRAAR 579

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +VN K ILYAD+IT S+Q AI+ET RRR KQ+ +N++H I P S + +I + ID     +
Sbjct: 580 HVNGKAILYADSITPSMQKAIEETERRRAKQMAYNEEHGITPTSARRQITDKID---TGE 636

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLR-------------KQMHLAADNLNFEEAARIR 787
           A   N   D Q ++++       +  LR             K+M   + +L FEEAA++R
Sbjct: 637 AEAPN---DNQAIAVTHAFPDVDISILRSPDLLAKEIARLEKEMKALSRDLKFEEAAKVR 693

Query: 788 DEIKRLK 794
           D++  L+
Sbjct: 694 DKVVGLR 700


>gi|330502895|ref|YP_004379764.1| excinuclease ABC subunit B [Pseudomonas mendocina NK-01]
 gi|328917181|gb|AEB58012.1| excinuclease ABC subunit B [Pseudomonas mendocina NK-01]
          Length = 671

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/663 (55%), Positives = 494/663 (74%), Gaps = 10/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +V+A
Sbjct: 4   FQLVTRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D IVV +VS IYG+GS E Y +M++ L  GD ++Q+ LL  L + QY R 
Sbjct: 124 SATKALIERKDVIVVCTVSSIYGLGSPEEYLKMVLHLDRGDKMDQRALLRRLAELQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+IFP+  +  A RV +F +++E IS F PLTG+ I+ +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESISAFDPLTGEVIQKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A+++IK EL+ RL  L    +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLLEAVEHIKVELQQRLEYLRGANKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTL++Y+P+++LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPDEALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEEW    P TI VSATPG +E E   G ++EQ++RPTGLVDP VE
Sbjct: 364 GFRLPSALDNRPMRFEEWEAASPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDPEVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R ARTQV+D+  EI L    G R+L+T LTKRMAEDLT+YL + +++VRY+HS++ T+E
Sbjct: 423 VRPARTQVDDLLSEIRLRVAAGDRVLVTTLTKRMAEDLTDYLGDHDVKVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD +T S+Q AI ET RRREKQ+  N+ + I P+ V++ + ++++  ++  
Sbjct: 543 NLNGKAILYADNMTGSMQRAIGETERRREKQIAFNEANGIVPKGVQKDVKDILEGAVVPG 602

Query: 741 AATT---NISIDAQQLSLSKKKGKA------HLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           A +     ++  A++ +  + + ++       ++ L ++M+  A +L FE AA++RDEI+
Sbjct: 603 ARSNKRKGMAKAAEESARYENELRSPSEITKRIRQLEEKMYALARDLEFEAAAQLRDEIQ 662

Query: 792 RLK 794
           +L+
Sbjct: 663 KLR 665


>gi|320156870|ref|YP_004189249.1| excinuclease ABC subunit B [Vibrio vulnificus MO6-24/O]
 gi|319932182|gb|ADV87046.1| excinuclease ABC subunit B [Vibrio vulnificus MO6-24/O]
          Length = 676

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/670 (55%), Positives = 491/670 (73%), Gaps = 19/670 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            + + +DY PSGDQP AI QL +G+ +    Q LLGVTGSGKTFT+A VI   QRPAI++
Sbjct: 4   LYDLVSDYAPSGDQPTAIKQLTEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N  I++MR
Sbjct: 64  APNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSVNAHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER D I+V+SVS IYG+G  E+Y QM++ ++ GD ++Q+++L  L + QY R
Sbjct: 124 LSATKALLERKDAIIVASVSAIYGLGDPEAYLQMMLHIRRGDVMDQRDILRRLAELQYSR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIK 378
            DI   RG FRV G+ I++FP+  +  A R+ MF ++I+ IS F PLTG  K R++    
Sbjct: 184 NDIAFERGQFRVRGEVIDVFPAESDQDAVRIEMFDDEIDCISVFDPLTGVVKQRDLPRFT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  A++ IK+EL+ R   L    +LLE QR+ QR  +D+EM+   G 
Sbjct: 244 IYPKTHYVTPRERILQAIENIKQELRERQTYLRDNNKLLEEQRISQRTQFDIEMMNELGF 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G I +Q++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLLDPV 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ T
Sbjct: 424 LEVRPVATQVDDLLSEIRIRAVKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN++ K ILYAD+ITKS++ A+DET RRREKQ  +N+K  I PQ++K  I ++++    
Sbjct: 544 ARNLHGKAILYADSITKSMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDIMELGDI 603

Query: 735 ----------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
                      + L   A  ++S +     L+ ++ +  +  L  QM+  A NL FE AA
Sbjct: 604 TKSRKQKVSKTVPLSKVAEPSLSYNV----LTPQQLEKEITKLEAQMYKHAQNLEFELAA 659

Query: 785 RIRDEIKRLK 794
           + RDEI++L+
Sbjct: 660 QKRDEIEKLR 669


>gi|254241832|ref|ZP_04935154.1| excinuclease ABC subunit B [Pseudomonas aeruginosa 2192]
 gi|126195210|gb|EAZ59273.1| excinuclease ABC subunit B [Pseudomonas aeruginosa 2192]
          Length = 670

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/666 (55%), Positives = 485/666 (72%), Gaps = 17/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +V+A
Sbjct: 4   FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G   SY +M++ L  GD ++Q+ELL  L   QY R 
Sbjct: 124 SATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+IFP+  +  A RV +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A+  IK ELK RL  L    +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+  M++GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW  + P TI VSATPG +E E   G ++EQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  +I     +  R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ T+E
Sbjct: 423 VRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVSILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ K ILYAD +T S+Q AIDET RRR KQ+  N+ H I P+ V++ I ++++  ++  
Sbjct: 543 NLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAVVPG 602

Query: 741 AATTNISIDAQQLSLSKKKGK------------AHLKSLRKQMHLAADNLNFEEAARIRD 788
           A      +      ++++ G+              ++ L ++M+  A +L FE AA++RD
Sbjct: 603 ARGKRKGV----AKVAEESGRYENELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRD 658

Query: 789 EIKRLK 794
           EI+ L+
Sbjct: 659 EIQTLR 664


>gi|146283328|ref|YP_001173481.1| excinuclease ABC subunit B [Pseudomonas stutzeri A1501]
 gi|145571533|gb|ABP80639.1| excinuclease ABC, B subunit [Pseudomonas stutzeri A1501]
          Length = 671

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/663 (55%), Positives = 487/663 (73%), Gaps = 10/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ T + P+GDQP AI Q+++GI +    Q LLGVTGSGKTF++A VI  +QRP +V+A
Sbjct: 4   FELVTRFKPAGDQPEAIRQMIEGIEAGLSHQTLLGVTGSGKTFSIANVIAHVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+G  +SY +M++ +  GD ++Q+ELL  L   QY R 
Sbjct: 124 SATKALLERPDAIIVTTVSCIYGLGDPQSYLKMVLHVDRGDRLDQRELLRRLTGLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+IFP+  +  A R+ +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAVRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A++ IK+EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLLDAIEKIKDELRERLDYLRSQNKLVEAQRLEQRTRFDLEMIMELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR+ GEPPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRDAGEPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG +E E   G +VEQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPMRFDEWEAICPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDPQIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI     +  R+L T LTKRM+EDLT+YL + +++VRY+HS++ T+E
Sbjct: 423 VRPALTQVDDLLSEIRKCVAKEERVLATTLTKRMSEDLTDYLGDHDVKVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD IT S+Q AIDET RRR KQ+  N+ H I P+ VK+ + ++++   +  
Sbjct: 543 NLNGRAILYADNITGSMQRAIDETERRRAKQIAFNEAHGIVPKGVKKDVQDILEGATVPG 602

Query: 741 AATTNISIDAQQLSLSKK---------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           + +     +A+    S +         +    ++ L ++M L A +L FE AA  RDEI 
Sbjct: 603 SRSKKRRGEAKAAEESARYESELRSPSEITKRIRQLEEKMLLLARDLEFEAAAEARDEIH 662

Query: 792 RLK 794
           +L+
Sbjct: 663 KLR 665


>gi|145630876|ref|ZP_01786653.1| excinuclease ABC subunit B [Haemophilus influenzae R3021]
 gi|144983536|gb|EDJ91004.1| excinuclease ABC subunit B [Haemophilus influenzae R3021]
          Length = 679

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/671 (55%), Positives = 488/671 (72%), Gaps = 15/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 10  FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 70  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + QY R 
Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V    IY
Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 250 PKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLDPLIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD+ITKS++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D   +  
Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQIKYNEEHGIVPQALNKKVGELLD---IGQ 606

Query: 741 AATTNISIDAQQLSLS------------KKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            A      + Q+  ++             K+ +  +K L +QM+  A +L FE+AA IRD
Sbjct: 607 GANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRD 666

Query: 789 EIKRLKSSPYF 799
           ++  L+    F
Sbjct: 667 QLHELREQFVF 677


>gi|319896940|ref|YP_004135135.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Haemophilus influenzae F3031]
 gi|329123296|ref|ZP_08251863.1| excision endonuclease subunit UvrB [Haemophilus aegyptius ATCC
           11116]
 gi|317432444|emb|CBY80799.1| UvrABC system protein B [Haemophilus influenzae F3031]
 gi|327471420|gb|EGF16869.1| excision endonuclease subunit UvrB [Haemophilus aegyptius ATCC
           11116]
          Length = 679

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/671 (55%), Positives = 489/671 (72%), Gaps = 15/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 10  FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 70  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + QY R 
Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V    IY
Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 250 PKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+    I++Q++RPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGAYELEKSGSEIIDQVVRPTGLLDPLIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD+ITKS++ AI ET RRREKQ ++N++H I PQ++ +K+ E++D   +  
Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLD---IGQ 606

Query: 741 AATTNISIDAQQLSLS------------KKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            A      + Q+  ++             K+ +  +K L +QM+  A +L FE+AA IRD
Sbjct: 607 GANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRD 666

Query: 789 EIKRLKSSPYF 799
           ++ +L+    F
Sbjct: 667 QLHQLREQFVF 677


>gi|261253549|ref|ZP_05946122.1| excinuclease ABC subunit B [Vibrio orientalis CIP 102891]
 gi|260936940|gb|EEX92929.1| excinuclease ABC subunit B [Vibrio orientalis CIP 102891]
          Length = 676

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/669 (56%), Positives = 490/669 (73%), Gaps = 17/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +DY PSGDQP AI QLL+G+ S    Q LLGVTGSGKTFT+A VI + QRPAI++A
Sbjct: 5   FDLVSDYQPSGDQPTAIRQLLEGLDSGLAHQTLLGVTGSGKTFTLANVIASAQRPAILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  ESY QM++ ++ GD ++Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHIRRGDVMDQRDILRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A R+ MF ++I+ IS F PLTG  K R++    I
Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEIDCISVFDPLTGAVKQRDLARYTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL+ R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILAAVEEIKLELESRKKYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRP++FEE+  + P TI VSATPG++ELE+  G I +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPMKFEEFESISPQTIFVSATPGNYELEKSDGEIADQVVRPTGLLDPEL 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL E +++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAEDLTEYLTEHDVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K ILYAD+ITKS++ A+ ET+RRREKQ E+N K  I PQ++K  I ++++   L 
Sbjct: 545 RNIAGKAILYADSITKSMEKAMGETSRRREKQQEYNAKLGIEPQALKRNIKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D A       ++ + LSK             ++    +  L  QM+  A +L FE AA+ 
Sbjct: 602 DIAKGKKQRTSKAVPLSKVAEPSQSYDVMTPQQLDKEISKLEAQMYQHAQDLEFELAAQK 661

Query: 787 RDEIKRLKS 795
           RD+I +L+S
Sbjct: 662 RDQIDKLRS 670


>gi|269962086|ref|ZP_06176440.1| excinuclease ABC subunit B [Vibrio harveyi 1DA3]
 gi|269833170|gb|EEZ87275.1| excinuclease ABC subunit B [Vibrio harveyi 1DA3]
          Length = 676

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/669 (55%), Positives = 494/669 (73%), Gaps = 17/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ ++Y PSGDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRPAI++A
Sbjct: 5   YELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAEAQRPAILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  ESY QM++ L+ GD ++Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF ++++ IS F PLTG  K R++    I
Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRYTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK+EL++R  +L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILDAIESIKDELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRP++FEE+  + P TI VSATPG++ELE+    I +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPMKFEEFEAISPQTIFVSATPGNYELEKSADEIADQVVRPTGLLDPEL 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K ILYAD+ITKS++ A+DET RRREKQ  +N +  I PQ++K  I ++++   L 
Sbjct: 545 RNIEGKAILYADSITKSMKKAMDETDRRREKQKAYNAEMGIEPQALKRNIKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D   +    + +Q+ LSK             ++ +  +  L   M+  A +L FE AA+ 
Sbjct: 602 DITKSKRQRNTKQVPLSKVAEPSQTYEIMSPQQLEKEISRLEAAMYQHAQDLEFELAAQK 661

Query: 787 RDEIKRLKS 795
           RDEI++L++
Sbjct: 662 RDEIEKLRA 670


>gi|319776133|ref|YP_004138621.1| excinulease of nucleotide excision repair [Haemophilus influenzae
           F3047]
 gi|317450724|emb|CBY86944.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Haemophilus influenzae F3047]
          Length = 679

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/671 (55%), Positives = 488/671 (72%), Gaps = 15/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 10  FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 70  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + QY R 
Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V    IY
Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 250 PKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+    I++Q++RPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGAYELEKSGSEIIDQVVRPTGLLDPLIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD+ITKS++ AI ET RRREKQ ++N++H I PQ++ +K+ E++D   +  
Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLD---IGQ 606

Query: 741 AATTNISIDAQQLSLS------------KKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            A      + Q+  ++             K+ +  +K L +QM+  A +L FE+AA IRD
Sbjct: 607 GANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRD 666

Query: 789 EIKRLKSSPYF 799
           ++  L+    F
Sbjct: 667 QLHELREQFVF 677


>gi|156975233|ref|YP_001446140.1| excinuclease ABC subunit B [Vibrio harveyi ATCC BAA-1116]
 gi|156526827|gb|ABU71913.1| hypothetical protein VIBHAR_02961 [Vibrio harveyi ATCC BAA-1116]
          Length = 676

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/669 (55%), Positives = 493/669 (73%), Gaps = 17/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ ++Y PSGDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRPAI++A
Sbjct: 5   YELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAEAQRPAILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  ESY QM++ L+ GD ++Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF ++++ IS F PLTG  K R++    I
Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRYTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK+EL++R  +L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILDAIESIKDELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRP++FEE+  + P TI VSATPG++ELE+    I +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPMKFEEFEAISPQTIFVSATPGNYELEKSADEIADQVVRPTGLLDPEL 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + A Q  R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRAAQDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K ILYAD+ITKS++ A+DET RRREKQ  +N +  I PQ++K  I ++++   L 
Sbjct: 545 RNIKGKAILYADSITKSMKKAMDETDRRREKQKAYNAEMGIEPQALKRNIKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D   +    + +Q+ LSK             ++ +  +  L   M+  A +L FE AA+ 
Sbjct: 602 DITKSKRQRNTKQVPLSKVAEPSQTYEIMSPQQLEKEISRLEAAMYQHAQDLEFELAAQK 661

Query: 787 RDEIKRLKS 795
           RDEI++L++
Sbjct: 662 RDEIEKLRA 670


>gi|124267474|ref|YP_001021478.1| excinuclease ABC subunit B [Methylibium petroleiphilum PM1]
 gi|124260249|gb|ABM95243.1| Excinuclease ABC subunit B [Methylibium petroleiphilum PM1]
          Length = 710

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/661 (56%), Positives = 487/661 (73%), Gaps = 4/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y P+GDQP AI QL+ GI+  E  Q LLGVTGSGKTFTMA VI  + RPAIV A
Sbjct: 31  FQLFQPYPPAGDQPTAIGQLVDGINDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIVFA 90

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF++FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR 
Sbjct: 91  PNKTLAAQLYSEFRDFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 150

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER D I+V++VS IYGIG  E Y+QM + ++ G  + Q++L++ L++ QYKR 
Sbjct: 151 SATKSLLERRDVIIVATVSAIYGIGKPEDYTQMRLIVRAGGKLGQRDLIAQLIRMQYKRN 210

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RGTFRV GD+++IFP+   ++A R+ +F ++IE +S F PLTGQ  + V    +Y
Sbjct: 211 ETDFARGTFRVRGDTVDIFPAEHSELAIRIELFDDEIEALSLFDPLTGQIRQKVPRFVVY 270

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR  +  A++ IKEEL+ RL E   +G+L+EAQR+EQR  +DLEML+  G C+
Sbjct: 271 PSSHYVTPREQVLAAIEGIKEELRNRLAEFVADGKLVEAQRIEQRTRFDLEMLQEIGHCK 330

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L G  PGEPP TL +Y+P+D+L+F+DESHV I Q+ GM+ GD  RK TL EY
Sbjct: 331 GIENYSRHLAGSAPGEPPSTLVDYLPKDALMFLDESHVLIGQLGGMFNGDRARKTTLVEY 390

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATP ++E E   G +VEQ++RPTGLVDP VE
Sbjct: 391 GFRLPSALDNRPLKFEEFETKMRQVVFVSATPATYEQEHA-GNVVEQLVRPTGLVDPVVE 449

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DV  EI        R+L+T LTKRMAE LT+YL +  ++VRY+HS+V T+E
Sbjct: 450 VRPATHQVDDVLQEIRDRVDANERVLITTLTKRMAEQLTDYLADNGVKVRYLHSDVDTVE 509

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 510 RVEILRDLRLGSFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 569

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD IT S++ AI ET RRRE+Q+  N +H I P+S+ +++ ++ID +  E 
Sbjct: 570 NLNGKAILYADKITDSMRRAIGETERRRERQIAFNAEHGITPRSINKQVKDLIDGVYSEK 629

Query: 741 AATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +   ++      A+  S+S+K     +K L KQM   A +L FE+AAR+RD++  L+   
Sbjct: 630 SRGDDLKAAQAAAEIESMSEKDLGKRIKLLEKQMLEHARSLEFEKAARVRDQLALLREQA 689

Query: 798 Y 798
           +
Sbjct: 690 F 690


>gi|171057735|ref|YP_001790084.1| excinuclease ABC subunit B [Leptothrix cholodnii SP-6]
 gi|170775180|gb|ACB33319.1| excinuclease ABC, B subunit [Leptothrix cholodnii SP-6]
          Length = 703

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/661 (55%), Positives = 486/661 (73%), Gaps = 4/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y P+GDQP AI  L+ GI      Q LLGVTGSGKTFTMA VI  M RPAI+ A
Sbjct: 27  FQLFQPYPPAGDQPTAIEGLVSGIQDGLTYQTLLGVTGSGKTFTMANVIARMGRPAIIFA 86

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAY+P+ D +IEK+SSINE I++MR 
Sbjct: 87  PNKTLAAQLYAEFREFFPKNAVEYFVSYYDYYQPEAYMPQRDLFIEKDSSINEHIEQMRL 146

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S+LER D I+V++VS IYGIG  E Y+QM   +++GD++ Q+++++ L++ QY R 
Sbjct: 147 SATKSVLERRDTIIVATVSAIYGIGKPEDYTQMRFIVRVGDTIGQRDVIAQLIRMQYTRN 206

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD+I+IFP+   ++A R+ +F +++E +  F PLTG+  + V    +Y
Sbjct: 207 DTEFARGTFRVRGDTIDIFPAEHSELAIRLELFDDEVESLQLFDPLTGRVRQKVPRFTVY 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR  +  A++ IK EL+ RL E   +G+L+EAQR+EQR  +DLEML+  G C+
Sbjct: 267 PSSHYVTPRERVLAAIEGIKLELRERLAEFVADGKLVEAQRVEQRTRFDLEMLQEVGHCK 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G  PGEPP TL +Y+P D+L+F+DESHV I Q+ GMY GD  RK TL  Y
Sbjct: 327 GIENYSRHLSGAAPGEPPSTLVDYLPSDALMFLDESHVLIGQLGGMYNGDRARKTTLVAY 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPLRFEE+       + VSATP  +E +Q  G +VEQ++RPTGLVDP +E
Sbjct: 387 GFRLPSAMDNRPLRFEEFERKMRQVVFVSATPADYE-KQHAGQVVEQLVRPTGLVDPLIE 445

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A +QV+DV  EI L      R+L+T LTKRMAE LT+Y+ E  ++VRY+HS++ T+E
Sbjct: 446 VRPAGSQVDDVLQEIRLRVAINERVLITTLTKRMAEQLTDYMAENGVKVRYLHSDIDTVE 505

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 506 RVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 565

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILYAD +T+S++ AI ET RRR +Q+EHN  H I P+ +++ + E+ID +  E 
Sbjct: 566 NVNGKAILYADKMTESMRKAIGETERRRARQVEHNTLHGITPRGIRKHVKELIDGVYGEK 625

Query: 741 AATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +   +++I    A+  +LS+K     +K L KQM   A NL FE+AARIRD++ +L+   
Sbjct: 626 SGKDDLAIMHSVAEVEALSEKDLGKRIKQLEKQMLEHARNLEFEKAARIRDQLAQLREQA 685

Query: 798 Y 798
           +
Sbjct: 686 F 686


>gi|37679377|ref|NP_933986.1| excinuclease ABC subunit B [Vibrio vulnificus YJ016]
 gi|37198120|dbj|BAC93957.1| excinuclease ABC subunit B [Vibrio vulnificus YJ016]
          Length = 680

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/670 (55%), Positives = 491/670 (73%), Gaps = 19/670 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            + + +DY PSGDQP AI QL +G+ +    Q LLGVTGSGKTFT+A VI   QRPAI++
Sbjct: 8   LYDLVSDYAPSGDQPTAIKQLTEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILL 67

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N  I++MR
Sbjct: 68  APNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSVNAHIEQMR 127

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER D I+V+SVS IYG+G  E+Y QM++ ++ GD ++Q+++L  L + QY R
Sbjct: 128 LSATKALLERKDAIIVASVSAIYGLGDPEAYLQMMLHIRRGDVMDQRDILRRLAELQYSR 187

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIK 378
            DI   RG FRV G+ I++FP+  +  A R+ MF ++I+ IS F PLTG  K R++    
Sbjct: 188 NDIAFERGQFRVRGEVIDVFPAESDQDAVRIEMFDDEIDCISVFDPLTGVVKQRDLPRFT 247

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  A++ IK+EL+ R   L    +LLE QR+ QR  +D+EM+   G 
Sbjct: 248 IYPKTHYVTPRERILQAIENIKQELRERQTYLRDNNKLLEEQRISQRTQFDIEMMNELGF 307

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 308 CSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLV 367

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G I +Q++RPTGL+DP 
Sbjct: 368 EYGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLLDPV 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ T
Sbjct: 428 LEVRPVATQVDDLLSEIRIRAVKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN++ K ILYAD+ITKS++ A+DET RRREKQ  +N+K  I PQ++K  I ++++    
Sbjct: 548 ARNLHGKAILYADSITKSMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDIMELGDI 607

Query: 735 ----------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
                      + L   A  ++S +     L+ ++ +  +  L  QM+  A +L FE AA
Sbjct: 608 TKSRKQKVSKTVPLSKVAEPSLSYNV----LTPQQLEKEITKLEAQMYKHAQDLEFELAA 663

Query: 785 RIRDEIKRLK 794
           + RDEI++L+
Sbjct: 664 QKRDEIEKLR 673


>gi|77917717|ref|YP_355532.1| excinuclease ABC subunit B [Pelobacter carbinolicus DSM 2380]
 gi|90111043|sp|Q3A8D0|UVRB_PELCD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|77543800|gb|ABA87362.1| Excinuclease ABC subunit B [Pelobacter carbinolicus DSM 2380]
          Length = 667

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/655 (56%), Positives = 486/655 (74%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++++Y P GDQP AI +L  G+   +K Q+LLGVTGSGKTFTMA V+  +QRP +V+A
Sbjct: 4   FNLKSNYQPRGDQPQAIEELSTGLQRGDKHQVLLGVTGSGKTFTMANVVAQVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAYVP TDT+IEK+SSINE+ID+MRH
Sbjct: 64  HNKTLAAQLYGEFKELFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSINEEIDKMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL RND ++VSSVSCIYG+GS E+Y  M+++L+ G  +++  LL +LV+ QY R 
Sbjct: 124 SATRSLLSRNDVLIVSSVSCIYGLGSPEAYYGMLIRLETGMQLDRNALLKNLVEIQYDRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EIFP++ E  A R+  FG++I+ I E  PL G+ +  +E   ++
Sbjct: 184 DVDFHRGTFRVRGDTVEIFPAYEEKRALRIEFFGDEIDAICEIDPLRGKVLDRLERTAVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  RPTL+ A++ I++EL+ RL    +   LLEAQR+EQR  +D+EM+E  G CQ
Sbjct: 244 PASHYVATRPTLDRAIREIQDELRERLTWFRENNMLLEAQRIEQRTMFDIEMIEEMGYCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  G+PP TLF+Y P+D+LLF+DESHVT+ QI  MYRGD  RK TL  Y
Sbjct: 304 GIENYSRFLDGRQAGQPPATLFDYFPDDALLFIDESHVTVSQIGAMYRGDRSRKETLVRY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS +DNRPL FEE+      TI VSATP  +EL +  G++VEQIIRPTGL+DPP++
Sbjct: 364 GFRMPSALDNRPLTFEEFEAKGIQTIYVSATPADYELRKADGVVVEQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A+ QV+D+  EI L  +Q  R+L+T LTKRMAE+LT YL E  I+VRY+HS++ T+E
Sbjct: 424 VRPAKDQVDDLIHEIRLTIKQNERVLVTTLTKRMAEELTGYLGELGIKVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+R+LR G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT GRAAR
Sbjct: 484 RMQILRELREGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTCGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +VI+YAD IT+S++  +DET RRR  QL +N++H I PQ+VK+ +  +++ I  +D
Sbjct: 544 NVAGRVIMYADRITRSMRACLDETERRRTAQLAYNEEHGITPQTVKKSLRSILEDIAEKD 603

Query: 741 AATTNISIDAQQLS--LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                +   A++L    + +  K  +  ++++M  AA NL FE+AA +RD +  L
Sbjct: 604 --YVELPQVAEELGDYHTPQDVKNEIARVKEEMLAAAANLEFEKAAELRDRMLEL 656


>gi|16273166|ref|NP_439403.1| excinuclease ABC subunit B [Haemophilus influenzae Rd KW20]
 gi|260581165|ref|ZP_05848985.1| excinuclease ABC, B subunit [Haemophilus influenzae RdAW]
 gi|1174918|sp|P45125|UVRB_HAEIN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|1574178|gb|AAC22897.1| excinuclease ABC, subunit B (uvrB) [Haemophilus influenzae Rd KW20]
 gi|260092193|gb|EEW76136.1| excinuclease ABC, B subunit [Haemophilus influenzae RdAW]
          Length = 679

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/671 (55%), Positives = 489/671 (72%), Gaps = 15/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 10  FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 70  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + QY R 
Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V    IY
Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 250 PKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPPDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+    I++Q++RPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGAYELEKSGSEIIDQVVRPTGLLDPLIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD+ITKS++ AI ET RRREKQ ++N++H I PQ++ +K+ E++D   +  
Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLD---IGQ 606

Query: 741 AATTNISIDAQQLSLS------------KKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            A      + Q+  ++             K+ +  +K L +QM+  A +L FE+AA IRD
Sbjct: 607 GANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRD 666

Query: 789 EIKRLKSSPYF 799
           ++ +L+    F
Sbjct: 667 QLHQLREQFVF 677


>gi|262278210|ref|ZP_06055995.1| excinuclease ABC subunit B [Acinetobacter calcoaceticus RUH2202]
 gi|262258561|gb|EEY77294.1| excinuclease ABC subunit B [Acinetobacter calcoaceticus RUH2202]
          Length = 673

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/664 (57%), Positives = 481/664 (72%), Gaps = 10/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T Y P+GDQP AI +L+ GI    + QLLLGVTGSGKT+TMA VI   QRP IVMA
Sbjct: 7   FDLVTHYQPAGDQPQAIEKLVNGIEHGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR 
Sbjct: 67  HNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAINDHIDQMRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V + E++  LV+ QY R 
Sbjct: 127 SATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVEGDRVSRDEIIRRLVEMQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++  +RGT+R+ G+ I+IFP+  +  A R+ +F ++++ I  F PLTG+ +R V  I IY
Sbjct: 187 ELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVSRITIY 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  L  A+  IK+EL+ +L    +  +LLEAQR+EQR  YDLEM++  G   
Sbjct: 247 PKSHYVTPKDHLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTN 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GE PPTLF+YIPED+LL +DESHVT+PQI  MY+GD  RK  L  Y
Sbjct: 307 GIENYSRHLSGRPSGEAPPTLFDYIPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEEW  + PTTI VSATP  +ELE+    IVEQ++RPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPMKFEEWERIVPTTIFVSATPAKYELEKSDQ-IVEQVVRPTGLIDPEIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+DV  EIN+      R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T+E
Sbjct: 426 IRPVLTQVDDVLSEINIRKNLNERVLITTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 486 RVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--ILL 738
           NV  K ILYAD IT S+Q AIDET RRR KQ+E N+ H I P+S   ++++ ID   +L 
Sbjct: 546 NVKGKAILYADRITDSMQKAIDETDRRRAKQIEFNELHGITPRSAVRQVIKEIDSGEVLS 605

Query: 739 EDAATTNISIDAQQLSLSK-------KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           +D     +   AQ LS  +       K    H+  L K M  A+ +L FE+AARIRDEI 
Sbjct: 606 DDEIDEKVLEQAQALSADERHILSDPKLFSKHITKLEKDMLKASKDLQFEQAARIRDEII 665

Query: 792 RLKS 795
           RLK+
Sbjct: 666 RLKA 669


>gi|153835330|ref|ZP_01987997.1| excinuclease ABC, B subunit [Vibrio harveyi HY01]
 gi|148868170|gb|EDL67325.1| excinuclease ABC, B subunit [Vibrio harveyi HY01]
          Length = 676

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/669 (55%), Positives = 493/669 (73%), Gaps = 17/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ ++Y PSGDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRPAI++A
Sbjct: 5   YELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAEAQRPAILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  ESY QM++ L+ GD ++Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF ++++ IS F PLTG  K R++    I
Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRYTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK+EL++R  +L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILDAIESIKDELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRP++FEE+  + P TI VSATPG++ELE+    I +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPMKFEEFEAISPQTIFVSATPGNYELEKSADEIADQVVRPTGLLDPEL 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + A Q  R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRAAQDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K ILYAD+ITKS++ A+DET RRREKQ  +N +  I PQ++K  I ++++   L 
Sbjct: 545 RNIKGKAILYADSITKSMKKAMDETDRRREKQKAYNAEMGIEPQALKRNIKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D   +    + +Q+ LSK             ++ +  +  L   M+  A +L FE AA+ 
Sbjct: 602 DITKSKRQRNTKQVPLSKVAEPSQTYEIMSPQQLEKEISRLEGAMYQHAQDLEFELAAQK 661

Query: 787 RDEIKRLKS 795
           RDEI++L++
Sbjct: 662 RDEIEKLRA 670


>gi|85712417|ref|ZP_01043466.1| excinuclease ABC subunit B [Idiomarina baltica OS145]
 gi|85693695|gb|EAQ31644.1| excinuclease ABC subunit B [Idiomarina baltica OS145]
          Length = 676

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/667 (55%), Positives = 491/667 (73%), Gaps = 15/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI ++L+ + +    Q LLGVTGSGKTFTMA VI   QRP +++A
Sbjct: 5   FELISSYQPAGDQPAAIEKILENLDAGLAHQTLLGVTGSGKTFTMANVIAQSQRPTLILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++V+SVS IYG+G  ESY +M++ L+ GD ++Q+++L  L + QYKR 
Sbjct: 125 SATKALMERRDVVLVASVSAIYGLGDPESYMKMMLHLRRGDIIDQRDILRRLAQLQYKRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIKI 379
           D    RGT+RV G+ I+IFP+  E++A RV +F N+++ IS F PLTGQ    +V    I
Sbjct: 185 DAAFERGTYRVRGEVIDIFPAESEELAVRVELFDNEVDRISFFEPLTGQVTEADVARATI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  L  A++ IK+ELK R   L K+ +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPREVLVEAIEKIKDELKDRRDVLLKQNKLLEEQRINQRTQFDIEMMLELGYC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR PGEPPPTL +Y+P+D+LL +DESHVT+ Q+  MY+GD  RK  L E
Sbjct: 305 SGIENYSRYLSGRAPGEPPPTLMDYLPDDALLIIDESHVTVSQVGAMYKGDRSRKENLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+F+E+  + P T+ VSATPG +ELE+  G +VEQ++RPTGLVDP +
Sbjct: 365 YGFRLPSALDNRPLKFDEFEAIAPQTVYVSATPGKYELERSSGEVVEQVVRPTGLVDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R+  TQV+D+  E+ L  ++  R+L T LTK+MAEDL++YL E  IRVRY+HS++ T+
Sbjct: 425 EVRAVATQVDDLMSEVRLRVEKEERVLATTLTKKMAEDLSDYLDEHGIRVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K ILY D IT S+Q AI+ET RRREKQ+  N++H I PQ + +K+ +V+D  L +
Sbjct: 545 RNVNGKAILYGDRITGSMQRAIEETDRRREKQIAFNEEHGITPQKLNKKVTDVMD--LGQ 602

Query: 740 DA---------ATTNISIDAQQLSLSKKKGKAHLKSL---RKQMHLAADNLNFEEAARIR 787
                      A   ++      ++  K   A +K +    K+M+ AA NL FE+AA++R
Sbjct: 603 GGANRKNRAAKAVAEVASGYDPRTVMIKDTNAVIKEIEAKEKEMYEAAQNLEFEKAAQLR 662

Query: 788 DEIKRLK 794
           D+IK L+
Sbjct: 663 DDIKTLR 669


>gi|325275797|ref|ZP_08141666.1| excinuclease ABC subunit B [Pseudomonas sp. TJI-51]
 gi|324099068|gb|EGB97045.1| excinuclease ABC subunit B [Pseudomonas sp. TJI-51]
          Length = 671

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/663 (56%), Positives = 484/663 (73%), Gaps = 10/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI Q+++GI +    Q LLGVTGSGKTF++A VI+ +QRP +V+A
Sbjct: 4   FQLVTRFQPAGDQPEAIRQMVEGIEAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   R TFRV GD I+IFP+  +  A RV +F +++E I+ F PLTG+  R +     Y
Sbjct: 184 EMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVENIAAFDPLTGEVFRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A++ IK ELK RL  L K  +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLLDAVEGIKAELKDRLEYLHKANKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTL++Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG +E E   G +VEQ++RPTGLVDP VE
Sbjct: 364 GFRLPSALDNRPMRFDEWESVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDPQVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  EI      G R+L T LTKRMAEDL++YL + ++RVRY+HS++ T+E
Sbjct: 423 IRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD IT S+Q AIDET RRREKQ+  N+ + I P+ V + I ++++   +  
Sbjct: 543 NLNGRAILYADNITGSMQRAIDETERRREKQIAFNEANGIVPKGVIKDITDIMEGATVPG 602

Query: 741 AATTNISIDAQQLSLSKK---------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           A +      A+    S +         +    +K L ++M   A +L FE AA++RDEI 
Sbjct: 603 ARSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRDEIT 662

Query: 792 RLK 794
           +L+
Sbjct: 663 KLR 665


>gi|152978761|ref|YP_001344390.1| excinuclease ABC subunit B [Actinobacillus succinogenes 130Z]
 gi|150840484|gb|ABR74455.1| excinuclease ABC, B subunit [Actinobacillus succinogenes 130Z]
          Length = 692

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/667 (56%), Positives = 488/667 (73%), Gaps = 6/667 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
           H  +   F + +D+ PSGDQP+AIA+L++ ++     Q LLGVTGSGKTFT+A VI  + 
Sbjct: 17  HKINTKPFILHSDFKPSGDQPSAIAKLVENLNDGLAHQTLLGVTGSGKTFTIANVIAQLN 76

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPA+++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+
Sbjct: 77  RPAMLLAPNKTLAAQLYAEMKTFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASIND 136

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           QI++MR SAT+S LER D IVV+SVS IYG+G  +SY +M++ L+ G  ++Q+++L+ L 
Sbjct: 137 QIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQTGAIIDQRQILARLA 196

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
           + QY R D    RGTFRV G+ I+IFP+  +D A R+ +F N+IE +S F PLTG     
Sbjct: 197 ELQYTRNDQAFQRGTFRVRGEIIDIFPAESDDQAVRIELFDNEIERLSLFDPLTGTGFGR 256

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           +    +Y  +HYVTPR  +  A++ IK EL  R     KE +LLE QR+ QR  +D+EM+
Sbjct: 257 IPRFTVYPKTHYVTPREQILDAIEKIKTELAKRREYFIKENKLLEEQRITQRTLFDIEMM 316

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
              G C  IENYSRYL+GRN GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  R
Sbjct: 317 NELGYCSGIENYSRYLSGRNEGEPPPTLFDYVPADGLLIIDESHVTVPQIGGMYRGDRSR 376

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTG
Sbjct: 377 KETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTG 436

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP +EIR    QV+D+  E    A++  RIL+T LTKRMAEDLT+YL E  +RVRY+H
Sbjct: 437 LLDPEIEIRPVAIQVDDLLSESRQRAEKNERILVTTLTKRMAEDLTDYLEEHGVRVRYLH 496

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQ
Sbjct: 497 SDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 556

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAARN+  K ILYAD IT+S+  AI ET RRREKQ+++N++H I PQ + +K+ E++
Sbjct: 557 TIGRAARNLKGKAILYADRITQSMDKAITETNRRREKQMKYNEEHGIIPQGLNKKVGELL 616

Query: 734 D----PILLEDAATTNISIDAQQLSLSK--KKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           D        +  +   I   +    L K  K+ +  +K L +QM+  A +L FE+AA +R
Sbjct: 617 DIGQNSNRNKGKSRNKIENSSAHYKLPKTPKELQKQIKKLEQQMYKFAQDLEFEKAAAMR 676

Query: 788 DEIKRLK 794
           D++ +L+
Sbjct: 677 DQLHQLR 683


>gi|167032515|ref|YP_001667746.1| excinuclease ABC subunit B [Pseudomonas putida GB-1]
 gi|166859003|gb|ABY97410.1| excinuclease ABC, B subunit [Pseudomonas putida GB-1]
          Length = 671

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/663 (56%), Positives = 485/663 (73%), Gaps = 10/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI+ +QRP +V+A
Sbjct: 4   FQLVTRFQPAGDQPEAIRQLVEGIEAGLSHQTLLGVTGSGKTFSIANVIQHVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   R TFRV GD I+IFP+  +  A R+ +F +++E I+ F PLTG+  R +     Y
Sbjct: 184 EMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVFRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A++ IKEELK RL  L K  +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLLEAVEGIKEELKERLEYLHKANKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTL++Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS +DNRP+RF+EW  + P TI VSATPG +E E   G +VEQ++RPTGLVDP VE
Sbjct: 364 GFRMPSALDNRPMRFDEWEDVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDPQVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  EI      G R+L T LTKRMAEDL++YL + ++RVRY+HS++ T+E
Sbjct: 423 IRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD +T S+Q AIDET RRREKQ+  N+ + I P+ V + I ++++   +  
Sbjct: 543 NLNGRAILYADNVTGSMQRAIDETERRREKQIAFNEANGIVPKGVVKDITDILEGATVPG 602

Query: 741 AATTNISIDAQQLSLSKK---------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           A +      A+    S +         +    +K L ++M   A +L FE AA++RDEI 
Sbjct: 603 ARSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRDEIS 662

Query: 792 RLK 794
           +L+
Sbjct: 663 QLR 665


>gi|56478529|ref|YP_160118.1| excinuclease ABC subunit B [Aromatoleum aromaticum EbN1]
 gi|81821033|sp|Q5P0E7|UVRB_AZOSE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56314572|emb|CAI09217.1| Excinuclease ABC subunit B [Aromatoleum aromaticum EbN1]
          Length = 685

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/668 (55%), Positives = 486/668 (72%), Gaps = 8/668 (1%)

Query: 138 ITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
           ITF    F++   + P+GDQPAAI  L +GI      Q LLGVTGSGKT+TMA VI    
Sbjct: 11  ITFADSPFRLHQPFPPAGDQPAAIELLTEGIGDGLMYQTLLGVTGSGKTYTMANVIARCG 70

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPA+V+APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE
Sbjct: 71  RPALVLAPNKTLAAQLYAEFREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINE 130

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
            I++MR SAT+SL+ER D ++V++VSCIYGIG    Y  MI+ L+ G+ +  ++L+  LV
Sbjct: 131 HIEQMRLSATKSLMERRDVVIVATVSCIYGIGDPVDYHAMILHLREGERIAHRDLVQRLV 190

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R DI   RGTFRV GD I++FP+   ++A R+ MF +++E ++ F PLTG   + 
Sbjct: 191 AMQYTRSDIDFRRGTFRVRGDVIDVFPAENAELAVRIEMFDDEVEHLTLFDPLTGHLKQK 250

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           +    +Y +SHYVTPR T+  A++ IK+EL+ R    +  G+L+EAQR+EQR  +DLEML
Sbjct: 251 LVRFTVYPSSHYVTPRATVLKAIEAIKDELRDRSAWFQTSGKLVEAQRIEQRTRFDLEML 310

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
              G C+ IENYSR+L+GR  GEPPPTL +Y+P D+LLFVDESHV+IPQ+ GMY+GD  R
Sbjct: 311 NEMGFCKGIENYSRHLSGRGQGEPPPTLIDYLPSDALLFVDESHVSIPQVGGMYKGDRSR 370

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K  L  YGFRLPS +DNRPL+FEE+  L P TI VSATP ++E E  QG +VEQ++RPTG
Sbjct: 371 KENLVGYGFRLPSALDNRPLKFEEFERLMPQTIFVSATPSTYEAEH-QGQVVEQVVRPTG 429

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP +++R A TQV+D+  E       G R+L+T LTKRMAEDLT+YL E  IRVRY+H
Sbjct: 430 LIDPAIDVRPATTQVDDLLSEAKRRIAVGERVLVTTLTKRMAEDLTDYLAENGIRVRYLH 489

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ T+ER+EIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQ
Sbjct: 490 SDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 549

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAAR++N + ILYAD +T+S++ AIDET RRR KQ+  N+ + I P++V ++I ++I
Sbjct: 550 TIGRAARHINGRAILYADVVTRSMRAAIDETERRRVKQIAFNQANGIVPKTVSKRIKDII 609

Query: 734 DPILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           D +   D      S+     +  S+++K     ++ L K+M   A NL FE+AA  RDE+
Sbjct: 610 DGVYGGDVERDGRSVAEPPPEYFSMNEKTVAKSIRKLEKEMQEHARNLEFEKAAAARDEL 669

Query: 791 KRLKSSPY 798
            RL+   +
Sbjct: 670 FRLRQRTF 677


>gi|254786424|ref|YP_003073853.1| excinuclease ABC subunit B [Teredinibacter turnerae T7901]
 gi|237684197|gb|ACR11461.1| excinuclease ABC, B subunit [Teredinibacter turnerae T7901]
          Length = 671

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/662 (55%), Positives = 485/662 (73%), Gaps = 7/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L +G+ +    Q LLGVTGSGKTFT+A ++E +QRP ++MA
Sbjct: 10  FKVNSKFKPAGDQPAAIEKLYQGVEAGLAHQTLLGVTGSGKTFTIANLVEKLQRPTMIMA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+I+K++S+NE I++MR 
Sbjct: 70  HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIDKDASVNEHIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER+D ++V++VS IYG+G  ++Y +M++ L  GD ++Q+ +L  L + QY R 
Sbjct: 130 SATKALMERDDALIVATVSAIYGLGDPDAYLKMMLHLSRGDQIDQRAILRRLAELQYTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGT+RV G+ I++FP+  E  A R+ +F +++E+IS F PLTG+ +  +    IY
Sbjct: 190 DIDFGRGTYRVRGEIIDVFPADSEIEAVRIELFDDEVEQISSFDPLTGEILARLPRCTIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR T+  A+ +I+EE++ RL +     +L+EAQRLEQR  YD+EM+   G C 
Sbjct: 250 PKSHYVTPRQTILNAVDFIEEEMQERLEQFRGMDKLVEAQRLEQRTKYDMEMMRELGYCN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P++SLL +DESHVT+PQI GMY+GD  RK TL EY
Sbjct: 310 GIENYSRYLSGRAAGMPPPTLFDYLPKNSLLVIDESHVTVPQIGGMYKGDRSRKETLVEY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  L P  + VSATPG++E E  QG IVEQ++RPTGLVDP +E
Sbjct: 370 GFRLPSALDNRPMRFDEWEQLAPQMVFVSATPGNYEAEH-QGQIVEQVVRPTGLVDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D   EI    +   R+L+TVLTKRMAEDLTE+L E  +RVRY+HS++ T+E
Sbjct: 429 VRPAGTQVDDCLSEIRKRVKAKDRVLITVLTKRMAEDLTEFLMEHGVRVRYLHSDIDTVE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAI DADKEGFLRS  SLIQTIGRAAR
Sbjct: 489 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSDRSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  + ILYAD IT S+Q A+DET RRREKQ+  N+ + I P+ + + I ++++      
Sbjct: 549 NVKGRAILYADNITGSMQRAMDETNRRREKQIAFNEANGITPKGIVKSIADIMEGARAPG 608

Query: 741 A---ATTNISIDAQQLSLSKKKGK---AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A   +   ++  A   +     GK    H+  L K M  AA NL FE+AA IRD+I  LK
Sbjct: 609 ARPGSKRKVAEKAASYATDVPAGKDVWHHIADLEKDMLEAAKNLEFEKAAAIRDKIHELK 668

Query: 795 SS 796
             
Sbjct: 669 EG 670


>gi|68250221|ref|YP_249333.1| excinuclease ABC subunit B [Haemophilus influenzae 86-028NP]
 gi|81335357|sp|Q4QJX4|UVRB_HAEI8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|68058420|gb|AAX88673.1| UvrABC system protein B [Haemophilus influenzae 86-028NP]
          Length = 679

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/671 (55%), Positives = 489/671 (72%), Gaps = 15/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 10  FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 70  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + QY R 
Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V    IY
Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 250 PKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGTEIIDQVVRPTGLLDPLIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD+ITKS++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D   +  
Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQIKYNEEHGIVPQALNKKVGELLD---IGQ 606

Query: 741 AATTNISIDAQQLSLS------------KKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            A      + Q+  ++             K+ +  +K L +QM+  A +L FE+AA IRD
Sbjct: 607 GANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRD 666

Query: 789 EIKRLKSSPYF 799
           ++ +L+    F
Sbjct: 667 QLHQLREQFVF 677


>gi|291614226|ref|YP_003524383.1| excinuclease ABC, B subunit [Sideroxydans lithotrophicus ES-1]
 gi|291584338|gb|ADE11996.1| excinuclease ABC, B subunit [Sideroxydans lithotrophicus ES-1]
          Length = 674

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/674 (56%), Positives = 490/674 (72%), Gaps = 8/674 (1%)

Query: 136 KDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
           K ITF    + +   + PSGDQP AIAQL++GI      Q LLGVTGSGKTFTMA VI  
Sbjct: 2   KTITFPDSPYLLHLPFEPSGDQPTAIAQLVEGIEDGLAYQTLLGVTGSGKTFTMANVIAR 61

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
             RPAI+MAPNK LAAQLYSE ++FFP NAVEYFVSYYDYYQPEAYVP  D YIEK+SSI
Sbjct: 62  TGRPAILMAPNKTLAAQLYSEMRDFFPENAVEYFVSYYDYYQPEAYVPSRDVYIEKDSSI 121

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           NEQI++MR SAT+S+LER DC++V++VS IYGIG    Y  MI+ L+  + + Q++++  
Sbjct: 122 NEQIEQMRLSATKSMLERQDCVIVATVSAIYGIGDPVDYHGMILHLREHEKMAQRDVIQR 181

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV  QY+R DI   RG FRV GD I+IFP+   + A RV++F +++E +S F PLTG   
Sbjct: 182 LVAMQYERNDIDFNRGHFRVRGDVIDIFPAESSENALRVTLFDDEVESLSLFDPLTGHIQ 241

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
             V    +Y +SHYVTPR T   A++ IK EL  R+    KE +L+EAQR+EQR  +DLE
Sbjct: 242 TRVPRYTVYPSSHYVTPRETTLHAIETIKVELAERIAFFVKENKLVEAQRIEQRTRHDLE 301

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           ML   G  + IENYSR+L+GR P E PPTL +Y+P ++L+ +DESHVTIPQI GMY+GD 
Sbjct: 302 MLAEIGFTKGIENYSRHLSGRGPNEAPPTLMDYLPPNALMIIDESHVTIPQIGGMYKGDR 361

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK  L  YGFRLPS +DNRPLRF+E+  +   TI VSATP ++E E   G +VEQ++RP
Sbjct: 362 ARKENLVNYGFRLPSALDNRPLRFDEFEKIMRQTIFVSATPSTYEAEHT-GQVVEQVVRP 420

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP +++R A  QV+D+  E+ L    G R+L+T LTKRMAEDLTEY  E  I+VRY
Sbjct: 421 TGLIDPTIDVRPATNQVDDLMSEVTLRTNVGERVLVTTLTKRMAEDLTEYFSEHGIKVRY 480

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS+++T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SL
Sbjct: 481 LHSDIETVERVEIIRDLRLGMFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 540

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAAR+++   ILYAD IT S++ AIDET RRR KQ+ +N+ H I PQSV ++I +
Sbjct: 541 IQTIGRAARHLHGTAILYADRITDSMRKAIDETDRRRAKQVAYNEAHGITPQSVVKRIKD 600

Query: 732 VIDPILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +ID     DA   ++ +   +A+ L++S+K+    +  L K+M  AA NL FE+AA++RD
Sbjct: 601 IIDTEYDMDAERKSLKLAQTEAKYLAMSEKEVSREIAKLEKEMLQAAKNLEFEKAAQLRD 660

Query: 789 EIKRLKSSPYFQGL 802
           ++K+L+ S +   L
Sbjct: 661 QLKKLRESVFLSPL 674


>gi|50085644|ref|YP_047154.1| excinuclease ABC subunit B [Acinetobacter sp. ADP1]
 gi|81827402|sp|Q6F9D2|UVRB_ACIAD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|49531620|emb|CAG69332.1| excinuclease ABC subunit B (ATP-dependent DNA excision repair
           enzyme UvrAC) [Acinetobacter sp. ADP1]
          Length = 675

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/664 (56%), Positives = 488/664 (73%), Gaps = 10/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T+Y P+GDQP AI +L+ GI    + QLLLGVTGSGKT+TMA VI   QRP IVMA
Sbjct: 9   FDLVTNYQPAGDQPQAIKKLVSGIEQGNRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR 
Sbjct: 69  HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRL 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G  E+Y +M++ +  GD + + +L+  LV+ QY R 
Sbjct: 129 SATRALLERRDAIIVASVSAIYGLGDPEAYMKMLLHVVEGDRINRDDLIRRLVEMQYTRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++  +RGT+R+ G+ +++FP+  +  A R+ +F ++++ I  F PLTG+  R V  + IY
Sbjct: 189 ELEFLRGTYRIRGEILDVFPAESDQFAIRIELFDDEVDSIRWFDPLTGKMQRKVPRVTIY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  L+ A++ IK+EL+ +L    +  +LLEAQR+EQR  YDLEM++  G   
Sbjct: 249 PKSHYVTPKDNLSRAIETIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTN 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR+PG  PPTLF+YIPED+LL +DESHVT+PQI  MY+GD  RK  L  Y
Sbjct: 309 GIENYSRHLSGRSPGAAPPTLFDYIPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEEW  + PTT+ VSATP  +ELE+    IVEQ++RPTGL+DP +E
Sbjct: 369 GFRLPSALDNRPMKFEEWERIVPTTVFVSATPAKYELEKSDQ-IVEQVVRPTGLIDPEIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+DV  EIN+  +   R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T+E
Sbjct: 428 IRPVLTQVDDVLSEINIRKEMDERVLITTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 488 RVKIIHELRTGVYDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS-VKEKIMEV-IDPILL 738
           N+  K ILYAD +T S+Q AIDET RRREKQ+E NK H I P+S V++K+ E+    +  
Sbjct: 548 NIKGKAILYADRMTDSMQKAIDETERRREKQIEFNKIHGITPRSAVRQKVKEIDTGEVFN 607

Query: 739 EDAATTNISIDAQQLSLSKKKGKA-------HLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           +D     IS  A+ LS  ++   A       H+  L K+M  A+  L FE+AAR+RDEI 
Sbjct: 608 DDDIEGKISEQARALSADERHILADPKLFAKHMSKLEKEMLKASKELQFEQAARLRDEIL 667

Query: 792 RLKS 795
           RLK+
Sbjct: 668 RLKA 671


>gi|298507282|gb|ADI86005.1| excinuclease ABC, B subunit [Geobacter sulfurreducens KN400]
          Length = 664

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/654 (56%), Positives = 474/654 (72%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AIA+L +GI   ++ Q+LLGVTGSGKTFTMA VI AM RPA+V+A
Sbjct: 4   FRLASDYEPRGDQPRAIAELSEGIVRGDRDQVLLGVTGSGKTFTMANVIAAMNRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EF+  FP NAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++ID++RH
Sbjct: 64  PNKTLAAQLYGEFRELFPDNAVEYFVSYYDYYQPEAYIPTTDTFIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATRSLL R D I+V+SVSCIYGIGS   Y  M +    GD   + ELL  LV  QY+R 
Sbjct: 124 AATRSLLTRRDVIIVASVSCIYGIGSPAEYQAMHIFFHQGDEYGRDELLRKLVDIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EIFP+H  + A+R+  FG+ ++ ISE  PL G  ++ +    +Y
Sbjct: 184 DLDFHRGTFRVRGDIVEIFPAHEGERAYRIEFFGDTVDAISEIDPLRGVVVQRLTKCAVY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  R TL+ AM+ I+ +L+ RL    +   L+EAQRLEQR  +DLEM+E  G CQ
Sbjct: 244 PASHYVATRETLDRAMEEIRTDLRERLQWFRERNMLVEAQRLEQRTMFDLEMMEEMGFCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY  GR PGEPP TL +Y P D +LFVDESH+T+ Q+ GMYRGD  RK TL  Y
Sbjct: 304 GIENYSRYFDGRTPGEPPYTLLDYFPRDFILFVDESHITVSQVGGMYRGDRSRKETLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL F E+      ++ VSATP  +EL+Q  G++VEQ+IRPTGL+DP +E
Sbjct: 364 GFRLPAALDNRPLTFGEFTERLNQSVYVSATPADYELQQSGGVVVEQVIRPTGLLDPVIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D+  E+     +G R+L+T LTKRMAEDLT+Y  +  +RVRY+HS++ T++
Sbjct: 424 VRPATEQVDDLLHEVRETTARGERVLVTTLTKRMAEDLTDYYRDLGVRVRYLHSDIDTIQ 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLR+G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT GRAAR
Sbjct: 484 RMQIIRDLRMGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSARSLIQTCGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +VI+YADT+T S+Q  +DET RRR  Q   N +H I PQ+VK+ +  +++ I   D
Sbjct: 544 NVNGRVIMYADTVTGSMQSCLDETARRRALQEAFNTEHGITPQTVKKGLRTILESIEERD 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             T     + ++  +S  +    +K LRK+M  AA  L FE AA +R++IK+L+
Sbjct: 604 YYTVAAVAETREEYISADEIPKRVKKLRKEMLDAAKKLEFERAADLREQIKKLE 657


>gi|190573619|ref|YP_001971464.1| excinuclease ABC subunit B [Stenotrophomonas maltophilia K279a]
 gi|190011541|emb|CAQ45159.1| putative UvrABC system protein B (protein UvrB) (excinuclease ABC
           subunit B) [Stenotrophomonas maltophilia K279a]
          Length = 674

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/667 (55%), Positives = 487/667 (73%), Gaps = 11/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIA+L     +    Q LLGVTGSGKT+T+A VI+ +Q+P ++MA
Sbjct: 5   FELVSPYSPAGDQPDAIAKLTSNFEAGIAKQTLLGVTGSGKTYTIANVIQNVQKPTLIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++LL R D IVV++VS IYG+G+ E Y  + + L  G+ ++Q++L++ L + QY R 
Sbjct: 125 AATKTLLSRPDAIVVATVSAIYGLGAPEDYLSLRLILSKGERIDQRDLINHLTQLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RGTFRV G+ I++FP+  +  A R+ +F  ++E+I+ F PLTG+ +RN++   +Y
Sbjct: 185 EYELQRGTFRVRGEVIDVFPAESDSEALRIELFDGEVEKITLFDPLTGETMRNMQRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R  +  A++ IK ELK RL +L  E +L+EAQRL QR  +D+EM+   G C 
Sbjct: 245 PKTHYATTRERVLAAVETIKVELKERLEQLYAENKLVEAQRLAQRTQFDIEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+N GEPPPTLF+Y+P D+LL +DESHVTIPQI  M++GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKNAGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P  I VSATPG +E  +    I E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARCPRAIYVSATPGPYEYREAGDEITELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E N   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS+V T+E
Sbjct: 425 IRPVGTQVDDLMSEANARIKAGDRVLVTTLTKRMAENLTEYLTEHGIRVRYLHSDVDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           NV  K ILYAD +T+S+Q AIDET RRR KQ+E+N++H I P+SV   I++V++      
Sbjct: 545 NVRGKAILYADKVTRSMQAAIDETDRRRAKQVEYNEEHGIVPRSVARPIVDVLEGARSDA 604

Query: 735 ----PILLEDAATTNISID-AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                   +      ++ D A   SL   +  A LK+L +QM+  A +L FE+AAR+RD+
Sbjct: 605 AEKEAKKGKGKGRAGVAEDGADYRSLGPAQLAARLKALEQQMYQHAKDLEFEDAARVRDQ 664

Query: 790 IKRLKSS 796
           I++LK +
Sbjct: 665 IRQLKEA 671


>gi|169632767|ref|YP_001706503.1| excinuclease ABC subunit B [Acinetobacter baumannii SDF]
 gi|169151559|emb|CAP00329.1| excinuclease ABC subunit B (ATP-dependent DNA excision repair
           enzyme UvrAC) [Acinetobacter baumannii]
          Length = 673

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/666 (56%), Positives = 486/666 (72%), Gaps = 14/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T Y P+GDQP AI +L+ GI    + QLLLGVTGSGKT+TMA VI   QRP IVMA
Sbjct: 7   FDLVTHYQPAGDQPQAIEKLVNGIEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR 
Sbjct: 67  HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V ++E++  LV+ QY R 
Sbjct: 127 SATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVQGDRVSREEIIRRLVEMQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++  +RGT+R+ G+ I+IFP+  +  A R+ +F ++++ I  F PLTG+ +R V  + IY
Sbjct: 187 ELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVPRVTIY 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  L  A+  IK+EL+ +L    +  +LLEAQR+EQR  YDLEM++  G   
Sbjct: 247 PKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTN 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR+ GE PPTLF+Y+PED+LL +DESHVT+PQI  MY+GD  RK  L  Y
Sbjct: 307 GIENYSRHLSGRSAGEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEEW  + PTTI VSATP  +ELE+ +  +VEQ++RPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPMKFEEWERIVPTTIFVSATPARYELEKSEQ-VVEQVVRPTGLIDPEIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EIN+      R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T+E
Sbjct: 426 VRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 486 RVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS-VKEKIMEV------- 732
           NV  K ILYADTIT S++ AIDET RRR KQ+E N+ H I P+S V++ + E+       
Sbjct: 546 NVKGKAILYADTITDSMRKAIDETERRRTKQIEFNELHGITPRSAVRQAVKEIDTGEVLS 605

Query: 733 ---IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
              ID  +LE A    +S D + +    K    H+  L K+M  A+ +L FE+AARIRDE
Sbjct: 606 DDQIDEKVLEQAQA--LSADERHILSDPKLFSKHITKLEKEMLKASKDLQFEQAARIRDE 663

Query: 790 IKRLKS 795
           I RLK+
Sbjct: 664 IVRLKA 669


>gi|148548992|ref|YP_001269094.1| excinuclease ABC subunit B [Pseudomonas putida F1]
 gi|148513050|gb|ABQ79910.1| Excinuclease ABC subunit B [Pseudomonas putida F1]
          Length = 671

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/663 (55%), Positives = 485/663 (73%), Gaps = 10/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI+ +QRP +V+A
Sbjct: 4   FQLVTRFQPAGDQPEAIRQLVEGIEAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   R TFRV GD I+IFP+  +  A R+ +F +++E I+ F PLTG+  R +     Y
Sbjct: 184 EMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVFRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A++ IKEELK RL  L K  +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLLEAVEGIKEELKERLEYLHKANKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTL++Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS +DNRP+RF+EW  + P TI VSATPG +E E   G +VEQ++RPTGLVDP VE
Sbjct: 364 GFRMPSALDNRPMRFDEWEDVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDPQVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI      G R+L T LTKRMAEDL++YL + ++RVRY+HS++ T+E
Sbjct: 423 VRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD +T S+Q AIDET RRREKQ+  N+ + I P+ V + I ++++   +  
Sbjct: 543 NLNGRAILYADNVTGSMQRAIDETERRREKQIAFNEANGIVPKGVVKDITDIMEGAAVPG 602

Query: 741 AATTNISIDAQQLSLSKK---------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           A +      A+    S +         +    +K L ++M   A +L FE AA++RDEI 
Sbjct: 603 ARSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRDEIA 662

Query: 792 RLK 794
           +L+
Sbjct: 663 QLR 665


>gi|145636889|ref|ZP_01792554.1| excinuclease ABC subunit B [Haemophilus influenzae PittHH]
 gi|145269970|gb|EDK09908.1| excinuclease ABC subunit B [Haemophilus influenzae PittHH]
          Length = 679

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/671 (55%), Positives = 489/671 (72%), Gaps = 15/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 10  FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 70  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + QY R 
Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V    IY
Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 250 PKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+    I++Q++RPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGAYELEKSGSEIIDQVVRPTGLLDPLIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD+ITKS++ AI ET RRR KQ+++N++H I PQ++ +K+ E++D   +  
Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRRAKQIKYNEEHGIVPQALNKKVGELLD---IGQ 606

Query: 741 AATTNISIDAQQLSLS------------KKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            A      + Q+  ++             K+ +  +K L +QM+  A +L FE+AA IRD
Sbjct: 607 GANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRD 666

Query: 789 EIKRLKSSPYF 799
           ++ +L+    F
Sbjct: 667 QLHQLREQFVF 677


>gi|26988700|ref|NP_744125.1| excinuclease ABC subunit B [Pseudomonas putida KT2440]
 gi|81840710|sp|Q88LF9|UVRB_PSEPK RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|24983488|gb|AAN67589.1|AE016388_9 excinuclease ABC, B subunit [Pseudomonas putida KT2440]
 gi|313499918|gb|ADR61284.1| UvrB [Pseudomonas putida BIRD-1]
          Length = 671

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/663 (55%), Positives = 485/663 (73%), Gaps = 10/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI+ +QRP +V+A
Sbjct: 4   FQLVTRFQPAGDQPEAIRQLVEGIEAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   R TFRV GD I+IFP+  +  A R+ +F +++E I+ F PLTG+  R +     Y
Sbjct: 184 EMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVFRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A++ IKEELK RL  L K  +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLLEAVEGIKEELKERLEYLHKANKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTL++Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS +DNRP+RF+EW  + P TI VSATPG +E E   G +VEQ++RPTGLVDP VE
Sbjct: 364 GFRMPSALDNRPMRFDEWEDVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDPQVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI      G R+L T LTKRMAEDL++YL + ++RVRY+HS++ T+E
Sbjct: 423 VRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD +T S+Q AIDET RRREKQ+  N+ + I P+ V + I ++++   +  
Sbjct: 543 NLNGRAILYADNVTGSMQRAIDETERRREKQIAFNEANGIVPKGVVKDITDIMEGATVPG 602

Query: 741 AATTNISIDAQQLSLSKK---------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           A +      A+    S +         +    +K L ++M   A +L FE AA++RDEI 
Sbjct: 603 ARSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRDEIA 662

Query: 792 RLK 794
           +L+
Sbjct: 663 QLR 665


>gi|254251900|ref|ZP_04945218.1| Helicase subunit of the DNA excision repair complex [Burkholderia
           dolosa AUO158]
 gi|124894509|gb|EAY68389.1| Helicase subunit of the DNA excision repair complex [Burkholderia
           dolosa AUO158]
          Length = 707

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/680 (55%), Positives = 493/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y P+GDQP AI  L++G+H     Q LLGVTGSGKTFTMA  
Sbjct: 24  DESKFVTFEGSPFQLYQPYPPAGDQPTAIDTLVEGVHDGLSFQTLLGVTGSGKTFTMANT 83

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 84  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 143

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+
Sbjct: 144 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRSGDKLGQREV 203

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 204 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 263

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IKEEL+ RL    +EG+L+EAQRLEQR  +
Sbjct: 264 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHREGKLVEAQRLEQRTRF 323

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+++F+DESHV I Q++GMY 
Sbjct: 324 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAVMFLDESHVLIGQLNGMYN 383

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ+
Sbjct: 384 GDRARKENLVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSATPADYE-QRVTGQIAEQV 442

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A TQV+DV  EIN     G R+L+TVLTKRMAE LTE+L +  I+
Sbjct: 443 VRPTGLVDPEIEVRPASTQVDDVLTEINARVTAGERVLITVLTKRMAEQLTEFLADHGIK 502

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 503 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 562

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYADT+T+S++ AI ET RRR KQ+ +N+K  I P+ V ++
Sbjct: 563 RSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKR 622

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 623 IKDIIDGVYNPDDARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 681

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
             RD++  L+   +   + D
Sbjct: 682 ATRDQLALLRERVFGANVGD 701


>gi|145299263|ref|YP_001142104.1| excinuclease ABC subunit B [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852035|gb|ABO90356.1| uvrABC system subunit B [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 670

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/665 (55%), Positives = 484/665 (72%), Gaps = 14/665 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ+ + + P+GDQP AIA+LL GI S    Q LLGVTGSGKTFTMA VI  + RP ++M
Sbjct: 4   LFQLASQFQPAGDQPEAIARLLDGIESGLAHQTLLGVTGSGKTFTMANVIATLNRPTMIM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR
Sbjct: 64  APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPTTDTFIEKDASINDHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER D I+V+SVS IYG+G  ++Y  M++ LK+GD + Q+++L  L + QY R
Sbjct: 124 LSATKALLERRDVIIVASVSAIYGLGDPQAYLSMMLHLKVGDVINQRDILRRLAELQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+   RGTFRV G+ I+I+P+  + +A RV +F  ++E +S+F PLTG   + V    I
Sbjct: 184 NDMAFQRGTFRVRGEVIDIYPAESDKLALRVELFDEEVERLSQFDPLTGAIEQTVVRYTI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HY TPR T+  A+++IKEELK R  +L    +L+E QR+ QR  +D+EM++  G C
Sbjct: 244 YPKTHYATPRETILGAIEHIKEELKSRREQLLSLNKLVEEQRISQRTQFDMEMMQELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 304 SGIENYSRYLSGRAPGEPPPTLFDYLPGDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+F+E+  L P T+ VSATPG +EL +    +V+Q++RPTGL+DP +
Sbjct: 364 YGFRLPSALDNRPLKFDEFEALMPQTVFVSATPGPYELGKSGDDVVQQVVRPTGLLDPEI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI L      R+L+T LTKRM+EDLTEYL + ++RVRY+HS++ T+
Sbjct: 424 EVRPVTTQVDDLLSEIRLRVAVEERVLVTTLTKRMSEDLTEYLADHDVRVRYLHSDIDTV 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAA
Sbjct: 484 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N KVILY D+IT S+++AI+ET RRR  Q  HN +H I P+ + + + +V+D     
Sbjct: 544 RNLNGKVILYGDSITNSMRVAIEETERRRTLQHAHNLEHGITPKGLNKSVGDVMDMGGSR 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKS----------LRKQMHLAADNLNFEEAARIRDE 789
            A  T           ++ +G+ H++S          + +QM   A +L FE+AA +RD+
Sbjct: 604 SAGKTGRG----GRKAAEPQGEYHVRSAGEIAKEIKRMEEQMFQHARDLEFEQAAALRDQ 659

Query: 790 IKRLK 794
           I++L+
Sbjct: 660 IQQLR 664


>gi|260582944|ref|ZP_05850728.1| excinuclease ABC, B subunit [Haemophilus influenzae NT127]
 gi|260094044|gb|EEW77948.1| excinuclease ABC, B subunit [Haemophilus influenzae NT127]
          Length = 679

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/671 (55%), Positives = 489/671 (72%), Gaps = 15/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 10  FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 70  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + QY R 
Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V    IY
Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 250 PKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLDPLIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD+ITKS++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D   +  
Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQIKYNEEHGIVPQALNKKVGELLD---IGQ 606

Query: 741 AATTNISIDAQQLSL------------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            A      + Q+  +            + K+ +  +K L +QM+  A +L FE+AA IRD
Sbjct: 607 GANQKAKANKQRGKMVAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRD 666

Query: 789 EIKRLKSSPYF 799
           ++ +L+    F
Sbjct: 667 QLHQLREQFVF 677


>gi|332305739|ref|YP_004433590.1| excinuclease ABC, B subunit [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173068|gb|AEE22322.1| excinuclease ABC, B subunit [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 669

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/662 (55%), Positives = 477/662 (72%), Gaps = 12/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y P+GDQP AI  L++G+ S    Q LLGVTGSGKTFTMA VI  +QRP +++A
Sbjct: 5   FQLTSNYSPAGDQPKAIQALVEGLESGLAAQTLLGVTGSGKTFTMANVINEVQRPTLILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+N  I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++VSSVS IYG+G  +SY +M++  + GD + Q+++L  L + QY R 
Sbjct: 125 SATKALMERRDVVIVSSVSAIYGLGDPDSYMKMLLHFRQGDIMNQRDILRRLAEIQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD I+IFP+  E  A RV +F  ++E IS F PLTG   + V    I+
Sbjct: 185 DIAFERGTFRVRGDVIDIFPADSEREAVRVELFDEEVERISIFDPLTGAVEKTVARATIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A+++IKEELK R  +L    +L+E QR+ QR  +D+EM++  G C 
Sbjct: 245 PKTHYVTPREKILDAVEHIKEELKERKAQLLSVNKLVEEQRISQRCQFDMEMMQELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PG+PPPTL +Y P D L+F+DESHVT+ QI  MY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRTPGDPPPTLIDYFPADGLMFIDESHVTVSQIGAMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+  + P TI VSATPG +EL +    IVEQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFDEFEQIAPQTIYVSATPGKYELAKAPDDIVEQVVRPTGLIDPEIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI        R+L+T LTKRM+EDL+EYL E N++ RY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLLSEIEKCVAVNERVLVTTLTKRMSEDLSEYLDEHNVKARYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RIEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           ++N + ILYAD IT S+Q AIDET RRREKQ EHNKKHNI P  + + I +++D      
Sbjct: 545 HINGRAILYADRITGSMQRAIDETNRRREKQREHNKKHNIVPTQLNKPITDIMDVGEGTG 604

Query: 735 --PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
              ++L   A T    +     +S      ++  L K+M   A +L FE+AA +RDE++ 
Sbjct: 605 QGKVMLRKVAETGKKYNG----MSAPDLMKNIAELEKKMFQMAKDLEFEQAASLRDEVET 660

Query: 793 LK 794
           L+
Sbjct: 661 LR 662


>gi|87122161|ref|ZP_01078044.1| excinuclease ABC, B subunit [Marinomonas sp. MED121]
 gi|86162481|gb|EAQ63763.1| excinuclease ABC, B subunit [Marinomonas sp. MED121]
          Length = 676

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/665 (56%), Positives = 486/665 (73%), Gaps = 13/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L +GI +    Q LLGVTGSGKTFT+A V+   +RP I+MA
Sbjct: 5   FEVVSQFSPAGDQPKAIEKLTQGIEAGLAHQTLLGVTGSGKTFTIANVVAKAKRPTIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYV  +DT+IEK++S+NE I++MR 
Sbjct: 65  HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G  +SY +M++ L  GD ++Q+++L  L + QY R 
Sbjct: 125 SATKALLEREDVIIVATVSAIYGLGDPQSYLKMMLHLDRGDRIDQRDILRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD I++FP+  ED A R+ +F ++I+ ++ F PLT + IR V  + IY
Sbjct: 185 DVVFERGNFRVRGDVIDVFPADSEDTAVRIELFDDEIDNLAFFDPLTNKTIRKVPRLTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR T+  A++ IK EL  RL +L+   +L+E QRLEQR  YDLEM++  G C 
Sbjct: 245 PKTHYVTPRETVMDAIERIKVELDERLQQLKYLDKLVELQRLEQRTRYDLEMMQELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P ++LL +DESHVT+PQI  MY+GD  RK  L EY
Sbjct: 305 GIENYSRYLSGRPEGSPPPTLFDYLPANALLVIDESHVTVPQIGAMYKGDRSRKENLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEEW  ++P TI+VSATPG +E E  Q  +VEQI+RPTGL+DPPVE
Sbjct: 365 GFRLPSALDNRPMRFEEWEQIKPQTILVSATPGKYEAEH-QDWVVEQIVRPTGLIDPPVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN    +G RIL+T LTKRMAEDLT YLYE  IRVRY+HS++ T+E
Sbjct: 424 IRPVATQVDDLLSEINKRLPKGERILVTTLTKRMAEDLTSYLYEHGIRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD IT SI+ A+ ET RRR KQ  HNK+H I P+ V + + ++++      
Sbjct: 544 NINGRAILYADRITGSIERAMAETDRRRAKQEAHNKEHGIVPKGVSKSVQDIMEGSYNPG 603

Query: 741 A-----------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           A           A T+     + +       KA +K L+K+M  A++NL FE AA  RD+
Sbjct: 604 AGKGKQSKAKKVAETSADYKVESMDDVADVRKAIVK-LQKEMVEASENLKFELAAGYRDQ 662

Query: 790 IKRLK 794
           I+ L+
Sbjct: 663 IRSLQ 667


>gi|39998352|ref|NP_954303.1| excinuclease ABC subunit B [Geobacter sulfurreducens PCA]
 gi|81831945|sp|Q747K3|UVRB_GEOSL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|39985298|gb|AAR36653.1| excinuclease ABC, B subunit [Geobacter sulfurreducens PCA]
          Length = 664

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/654 (56%), Positives = 474/654 (72%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AIA+L +GI   ++ Q+LLGVTGSGKTFTMA VI A+ RPA+V+A
Sbjct: 4   FRLASDYEPRGDQPRAIAELSEGIVRGDRDQVLLGVTGSGKTFTMANVIAAVNRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EF+  FP NAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++ID++RH
Sbjct: 64  PNKTLAAQLYGEFRELFPDNAVEYFVSYYDYYQPEAYIPTTDTFIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATRSLL R D I+V+SVSCIYGIGS   Y  M +    GD   + ELL  LV  QY+R 
Sbjct: 124 AATRSLLTRRDVIIVASVSCIYGIGSPAEYQAMHIFFHQGDEYGRDELLRKLVDIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EIFP+H  + A+R+  FG+ ++ ISE  PL G  ++ +    +Y
Sbjct: 184 DLDFHRGTFRVRGDIVEIFPAHEGERAYRIEFFGDTVDAISEIDPLRGVVVQRLTKCAVY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  R TL+ AM+ I+ +L+ RL    +   L+EAQRLEQR  +DLEM+E  G CQ
Sbjct: 244 PASHYVATRETLDRAMEEIRTDLRERLQWFRERNMLVEAQRLEQRTMFDLEMMEEMGFCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY  GR PGEPP TL +Y P D +LFVDESH+T+ Q+ GMYRGD  RK TL  Y
Sbjct: 304 GIENYSRYFDGRTPGEPPYTLLDYFPRDFILFVDESHITVSQVGGMYRGDRSRKETLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL F E+      ++ VSATP  +EL+Q  G++VEQ+IRPTGL+DP +E
Sbjct: 364 GFRLPAALDNRPLTFGEFTERLNQSVYVSATPADYELQQSGGVVVEQVIRPTGLLDPVIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D+  E+     +G R+L+T LTKRMAEDLT+Y  +  +RVRY+HS++ T++
Sbjct: 424 VRPATEQVDDLLHEVRETTARGERVLVTTLTKRMAEDLTDYYRDLGVRVRYLHSDIDTIQ 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLR+G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT GRAAR
Sbjct: 484 RMQIIRDLRMGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSARSLIQTCGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +VI+YADT+T S+Q  +DET RRR  Q   N +H I PQ+VK+ +  +++ I   D
Sbjct: 544 NVNGRVIMYADTVTGSMQSCLDETARRRALQEAFNTEHGITPQTVKKGLRTILESIEERD 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             T     + ++  +S  +    +K LRK+M  AA  L FE AA +RD+IK+L+
Sbjct: 604 YYTVAAVAETREEYISADEIPKRVKKLRKEMLDAAKKLEFERAADLRDQIKKLE 657


>gi|254507800|ref|ZP_05119931.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus 16]
 gi|219549325|gb|EED26319.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus 16]
          Length = 676

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/668 (55%), Positives = 491/668 (73%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY PSGDQP AI QLL+G+ S    Q LLGVTGSGKTFT+A VI   QRPAI++A
Sbjct: 5   FELVSDYQPSGDQPTAINQLLEGLDSGLAHQTLLGVTGSGKTFTLANVIAKAQRPAILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFPHNAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKSFFPHNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  E+Y QM++ ++ GD ++Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPEAYLQMMLHIRRGDVLDQRDILRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A R+ MF ++I+ IS F PLTG  K R++    I
Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEIDCISIFDPLTGVVKQRDLPRFTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL+ R   L +  +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRDRILDAIENIKVELESRKKYLLENNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRKEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRP++FEE+  + P TI VSATPG++ELE+    I +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPMKFEEFESIAPQTIFVSATPGNYELEKSDNEIADQVVRPTGLLDPEL 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + + +  R+L+T LTKRMAEDLTEYL E +++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRSVKDERVLVTTLTKRMAEDLTEYLTEHDVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+ K ILYAD+ITKS++ A+DET RRREKQ E+N K  I PQ++K  I ++++   L 
Sbjct: 545 RNVSGKAILYADSITKSMKKAMDETNRRREKQQEYNAKMGIEPQALKRNIKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D   +     ++ + LSK             ++ +  +  L  QM+  A +L FE AA  
Sbjct: 602 DITKSKKQRVSKAVPLSKVAESSQRYDVMTPQQLEKEISKLEAQMYQHAQDLEFELAAEK 661

Query: 787 RDEIKRLK 794
           RD+I++L+
Sbjct: 662 RDQIEKLR 669


>gi|302188913|ref|ZP_07265586.1| excinuclease ABC subunit B [Pseudomonas syringae pv. syringae 642]
          Length = 671

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/665 (56%), Positives = 487/665 (73%), Gaps = 14/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +V+A
Sbjct: 4   FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+I+P+  +  A RV +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLVEAMEGIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G IVEQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDPQIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  EI+  A    R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ T+E
Sbjct: 423 IRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           N+N + ILYAD IT S++ AI ET RRREKQL  N +H I P+ V + + ++++      
Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRREKQLAFNLEHGITPKGVFKDVADIMEGATVPG 602

Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                   +  AA  N   + +  S S+   +  ++ L ++M+  A +L FE AA++RDE
Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660

Query: 790 IKRLK 794
           I +L+
Sbjct: 661 IGKLR 665


>gi|304310697|ref|YP_003810295.1| Helicase subunit of the DNA excision repair complex [gamma
           proteobacterium HdN1]
 gi|301796430|emb|CBL44638.1| Helicase subunit of the DNA excision repair complex [gamma
           proteobacterium HdN1]
          Length = 676

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/668 (55%), Positives = 488/668 (73%), Gaps = 12/668 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AI QL+ G+ S    Q LLGVTGSGKTFT+A VIEA+QRP +V+ 
Sbjct: 9   FQISSTYKPAGDQPEAIRQLVDGLESGLSHQTLLGVTGSGKTFTIANVIEAVQRPTLVLV 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSY+DYYQPEAYVP +DTYIEK+SS+N+ I++MR 
Sbjct: 69  HNKTLAAQLYGEFKEFFPNNAVEYFVSYFDYYQPEAYVPSSDTYIEKDSSVNDHIEQMRL 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER+D I+V++VSCIYG+G   +Y +M++ L  GD++EQ+ LL  L + QY R 
Sbjct: 129 SATKALMERSDVIIVATVSCIYGLGDPATYLKMVLHLDRGDAMEQRTLLRRLAELQYTRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   R T+RV GD ++IFP+  +  A RV +F ++IE +S F PLTG  +R V    ++
Sbjct: 189 EMDFRRATYRVRGDVVDIFPAESDAEAIRVELFDDEIENLSFFDPLTGAILRRVPRATVF 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR T+  AM+ IK EL++RL EL   G+L+E QRL +R  +DLEM++  G C 
Sbjct: 249 PKTHYVTPRETMLGAMEAIKAELRLRLDELSGAGKLIEHQRLGERTRFDLEMMQELGYCN 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G+  GEPP +LF+Y+P ++LL +DESHVT+PQ+  MYRGD  RK TL +Y
Sbjct: 309 GIENYSRHLSGKPQGEPPASLFDYLPANALLVIDESHVTLPQLGAMYRGDRSRKETLVQY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+EW    P  I VSATP  +E E  QG +VEQ++RPTGLVDP +E
Sbjct: 369 GFRLPSALDNRPLRFDEWEARAPQMIFVSATPAQYEAEH-QGQVVEQVVRPTGLVDPLIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D+ + I      G R+L+T LTKRMAEDLTE+  E+N++VRY+HS++ T+E
Sbjct: 428 VRPASHQVDDLLERIRERVAVGERVLVTTLTKRMAEDLTEFFNEQNVKVRYLHSDIGTVE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVA+LDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 488 RVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVAVLDADKEGFLRSERSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           NVN K ILYAD +T S++ AIDET RRR KQL  N+ H I P+SV++ + ++++      
Sbjct: 548 NVNGKAILYADVVTGSMRRAIDETERRRAKQLLFNEVHGITPRSVQKPVDDILEGAYRAP 607

Query: 738 -------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                  L   A      D  +L+ + +K    LK L  +M   A NL FE+AA++RDEI
Sbjct: 608 ASAGGRGLRKVAEAAPVYDLAELA-NPRKASTVLKELETRMLKHAANLEFEQAAKLRDEI 666

Query: 791 KRLKSSPY 798
           KRL+ + +
Sbjct: 667 KRLRDATF 674


>gi|226944118|ref|YP_002799191.1| excinuclease ABC subunit B [Azotobacter vinelandii DJ]
 gi|226719045|gb|ACO78216.1| excinuclease ABC, B subunit [Azotobacter vinelandii DJ]
          Length = 669

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/661 (55%), Positives = 485/661 (73%), Gaps = 8/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +V+A
Sbjct: 4   FQLVTRFQPAGDQPDAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIARVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D I+V++VS IYG+G   SY +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALMERPDAIIVATVSSIYGLGDPASYLKMVLHIDRGDRLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I++FP+  E  A R+ +F +++E ++ F PLTG+ IR +     Y
Sbjct: 184 DLDFARATFRVRGDVIDVFPAESELEAIRIELFDDEVESLAAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A++ IK ELK RL  L + G+L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLLEAVEQIKAELKERLEHLRERGKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PG PPPTL++Y+P+++L+ +DESHVT+PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRAPGLPPPTLYDYLPDNALMVIDESHVTVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG +E E   G ++EQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPMRFDEWERIAPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDPELE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI        R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ T+E
Sbjct: 423 VRPALTQVDDLLSEIRKRVAVEERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRSGAFDVLVGINLLREGLDMPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD+IT S++ AIDET RRR KQ+  N+ H I P+ VK+ I ++++  ++  
Sbjct: 543 NLNGKAILYADSITGSMRRAIDETERRRAKQIAFNETHGIVPRGVKKDIQDILEGAVVPG 602

Query: 741 AATTNISIDAQQLS-------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           A        A + S        S  +    ++ L ++M+  A +L FE AAR+RDEI+ L
Sbjct: 603 ARGRKRVARAAEESGQYAAELRSPSEIDKRIRQLEEKMYALARDLEFEAAARLRDEIQAL 662

Query: 794 K 794
           +
Sbjct: 663 R 663


>gi|145633293|ref|ZP_01789024.1| excinuclease ABC subunit B [Haemophilus influenzae 3655]
 gi|145634422|ref|ZP_01790132.1| excinuclease ABC subunit B [Haemophilus influenzae PittAA]
 gi|145638820|ref|ZP_01794428.1| excinuclease ABC subunit B [Haemophilus influenzae PittII]
 gi|229845025|ref|ZP_04465161.1| excinuclease ABC subunit B [Haemophilus influenzae 6P18H1]
 gi|144986139|gb|EDJ92729.1| excinuclease ABC subunit B [Haemophilus influenzae 3655]
 gi|145268402|gb|EDK08396.1| excinuclease ABC subunit B [Haemophilus influenzae PittAA]
 gi|145271792|gb|EDK11701.1| excinuclease ABC subunit B [Haemophilus influenzae PittII]
 gi|229811997|gb|EEP47690.1| excinuclease ABC subunit B [Haemophilus influenzae 6P18H1]
 gi|301169987|emb|CBW29591.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Haemophilus influenzae 10810]
 gi|309750803|gb|ADO80787.1| Excinuclease ABC, subunit B [Haemophilus influenzae R2866]
          Length = 679

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/671 (55%), Positives = 488/671 (72%), Gaps = 15/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 10  FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 70  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + QY R 
Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V    IY
Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 250 PKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLDPLIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD+ITKS++ AI ET RRREKQ ++N++H I PQ++ +K+ E++D   +  
Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLD---IGQ 606

Query: 741 AATTNISIDAQQLSLS------------KKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            A      + Q+  ++             K+ +  +K L +QM+  A +L FE+AA IRD
Sbjct: 607 GANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRD 666

Query: 789 EIKRLKSSPYF 799
           ++ +L+    F
Sbjct: 667 QLHQLREQFVF 677


>gi|53803510|ref|YP_114621.1| excinuclease ABC subunit B [Methylococcus capsulatus str. Bath]
 gi|81823612|sp|Q605S7|UVRB_METCA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|53757271|gb|AAU91562.1| excinuclease ABC, B subunit [Methylococcus capsulatus str. Bath]
          Length = 664

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/660 (55%), Positives = 488/660 (73%), Gaps = 7/660 (1%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           +++ Y PSGDQP AI +L++G++  E  Q LLGVTGSGKTFT+A VI  +QRP +++A N
Sbjct: 2   LRSGYAPSGDQPEAIRRLVEGLNDGELHQTLLGVTGSGKTFTIANVIAQVQRPTLILAHN 61

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY E K FFP N+VEYFVSYYDYYQPEAYVP +DTYIEK+SS+NE I++MR SA
Sbjct: 62  KTLAAQLYGEMKEFFPENSVEYFVSYYDYYQPEAYVPASDTYIEKDSSLNEHIEQMRLSA 121

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           T++L+ER+D ++V++VS IYG+G   SY +M++ L  GD ++Q+ L+  L + QY R + 
Sbjct: 122 TKALIERHDTVIVATVSSIYGLGEPASYFEMVLHLVRGDMIDQRTLVRRLAELQYTRNEA 181

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
            + RG++RV GD I+I+P+  E  A RV +F ++IE +S F PLTG+ I  +    +Y  
Sbjct: 182 ELRRGSYRVRGDVIDIYPAESEKEALRVELFDDEIERLSLFDPLTGEVISRIARYTVYPK 241

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           +HYVTPR  L  A++ IK ELK RL  L  + +L+EAQRLEQR  +D+E++   G C  I
Sbjct: 242 THYVTPREKLLEAVEEIKVELKDRLEHLRSQHKLVEAQRLEQRTLFDVEIILEVGYCSGI 301

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSR+L+GR PGEPPPTLF+Y+P+D+L+ +DESHVT+PQI  MYRGD  RK TL EYGF
Sbjct: 302 ENYSRFLSGRAPGEPPPTLFDYLPDDALIVIDESHVTVPQIGAMYRGDRSRKETLVEYGF 361

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPS +DNRPL+FEE+    P  I VSATPG +E     G +VEQ++RPTGLVDP VE+R
Sbjct: 362 RLPSALDNRPLKFEEFEARAPQRIYVSATPGPYERAHS-GAVVEQVVRPTGLVDPEVEVR 420

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A TQV+D+  EI    Q G R+L+T LTKRMAEDLTEYL E ++ VRY+HS+V T+ER+
Sbjct: 421 PASTQVDDLLSEIRFRVQGGERVLVTTLTKRMAEDLTEYLMEHDVAVRYLHSDVDTVERV 480

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAARN+
Sbjct: 481 EIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSAVSLIQTIGRAARNL 540

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + K ILYAD +T+S+Q AIDET RRR KQ+ +N++H + P+ + + + ++++  +   +A
Sbjct: 541 HGKAILYADKVTQSMQQAIDETERRRAKQIAYNERHGLTPRGITKSVTDILEVSIPGGSA 600

Query: 743 -----TTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                   ++       ++K    A L K L ++M+  A +L FEEAAR+RDEI+R++ S
Sbjct: 601 GSRKQAARVAEPGAGYKVAKPSEAARLIKQLEEKMYAHARDLEFEEAARLRDEIQRIRES 660


>gi|27366360|ref|NP_761888.1| excinuclease ABC subunit B [Vibrio vulnificus CMCP6]
 gi|32130295|sp|Q8D891|UVRB_VIBVU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56749771|sp|Q7MM80|UVRB_VIBVY RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|27362561|gb|AAO11415.1| excinuclease ABC, B subunit [Vibrio vulnificus CMCP6]
          Length = 676

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/670 (55%), Positives = 491/670 (73%), Gaps = 19/670 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            + + +DY PSGDQP AI QL +G+ +    Q LLGVTGSGKTFT+A VI   QRPAI++
Sbjct: 4   LYDLVSDYAPSGDQPTAIKQLTEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N  I++MR
Sbjct: 64  APNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSVNAHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER D I+V+SVS IYG+G  E+Y QM++ ++ GD ++Q+++L  L + QY R
Sbjct: 124 LSATKALLERKDAIIVASVSAIYGLGDPEAYLQMMLHIRRGDVMDQRDILRRLAELQYSR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIK 378
            DI   RG FRV G+ I++FP+  +  A R+ MF ++I+ IS F PLTG  K R++    
Sbjct: 184 NDIAFERGQFRVRGEVIDVFPAESDQDAVRIEMFDDEIDCISVFDPLTGVVKQRDLPRFT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  A++ IK+EL+ R   L    +LLE QR+ QR  +D+EM+   G 
Sbjct: 244 IYPKTHYVTPRERILQAIENIKQELRERQTYLRDNNKLLEEQRISQRTQFDIEMMNELGF 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G I +Q++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLLDPV 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ T
Sbjct: 424 LEVRPVATQVDDLLSEIRIRAVKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN++ K ILYAD+ITKS++ A+DET RRREKQ  +N+K  I PQ++K  I ++++    
Sbjct: 544 ARNLHGKAILYADSITKSMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDIMELGDI 603

Query: 735 ----------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
                      + L   A  ++S +     L+ ++ +  +  L  QM+  A +L FE AA
Sbjct: 604 TKSRKQKVSKTVPLSKVAEPSLSYNV----LTPQQLEKEITKLEAQMYKHAQDLEFELAA 659

Query: 785 RIRDEIKRLK 794
           + RDEI++L+
Sbjct: 660 QKRDEIEKLR 669


>gi|330959091|gb|EGH59351.1| excinuclease ABC subunit B [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 671

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/665 (55%), Positives = 487/665 (73%), Gaps = 14/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +V+A
Sbjct: 4   FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+I+P+  +  A R+ +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLVEAMENIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G IVEQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDPQIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  EI+  A    R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ T+E
Sbjct: 423 IRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           N+N + ILYAD IT S++ AI ET RRREKQ+  N +H I P+ V + + ++++      
Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGATVPG 602

Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                   +  AA  N   + +  S S+   +  ++ L ++M+  A +L FE AA++RDE
Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660

Query: 790 IKRLK 794
           I +L+
Sbjct: 661 IGKLR 665


>gi|73540754|ref|YP_295274.1| excinuclease ABC subunit B [Ralstonia eutropha JMP134]
 gi|90111049|sp|Q473K3|UVRB_RALEJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|72118167|gb|AAZ60430.1| Excinuclease ABC subunit B [Ralstonia eutropha JMP134]
          Length = 695

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/672 (56%), Positives = 487/672 (72%), Gaps = 12/672 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           +  K +TF    FQ+   + P+GDQP AI QL++GI      Q LLGVTGSGKT+TMA V
Sbjct: 12  DEDKIVTFPGSPFQLYQPFPPAGDQPEAIRQLVEGIEDGLSFQTLLGVTGSGKTYTMANV 71

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  M RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 72  IARMGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SLLER D I+V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 132 SSINEHIEQMRLSATKSLLERRDTIIVATVSAIYGIGNPNEYHQMILTLRTGDKISQRDV 191

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A R+ MF +++E +  F PLTG
Sbjct: 192 IARLIAMQYTRNETDFQRGTFRVRGDTIDIFPAEHAEMAVRLEMFDDEVESLQFFDPLTG 251

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK EL+ RL    KE RL+E QRLEQR  +
Sbjct: 252 RVRQKIPRFTVYPSSHYVTPRETVLRAIEDIKAELRDRLEFFHKENRLVEVQRLEQRTRF 311

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML   G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHV I Q++GMY 
Sbjct: 312 DLEMLSELGFCKGIENYSRHLSGAKPGEPPPTLVDYLPSDALMFLDESHVLIGQLNGMYN 371

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL EYGFRLPS +DNRPL+FEE+       + VSATP  +E E   G +VEQ+
Sbjct: 372 GDRARKTTLVEYGFRLPSALDNRPLKFEEFERKMRQVMFVSATPAQFEKEHA-GQVVEQV 430

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP + +R A TQV+D+  EINL  + G R+L+T LTKRMAE LTE+L E  ++
Sbjct: 431 VRPTGLVDPIIIVRPATTQVDDLLSEINLRVEAGERVLVTTLTKRMAEQLTEFLSENGVK 490

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 491 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 550

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN   ILYAD IT S++ AIDET RRR KQ+  N+ + I P+ V ++
Sbjct: 551 RSLIQTIGRAARNVNGTAILYADRITDSMRKAIDETERRRAKQMAFNEANGITPRGVIKR 610

Query: 729 IMEVIDPILLEDAATTNISIDAQQ-----LSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
           I ++ID +   DA      + A Q       +S+K+    +K L K M   A NL FE+A
Sbjct: 611 IKDIIDGVY--DAGEVKAELLAAQERARYEDMSEKQVSKEIKRLEKLMMDHAKNLEFEKA 668

Query: 784 ARIRDEIKRLKS 795
           A++RD++ +LK+
Sbjct: 669 AQVRDQLAKLKA 680


>gi|119897902|ref|YP_933115.1| excinuclease ABC subunit B [Azoarcus sp. BH72]
 gi|119670315|emb|CAL94228.1| excinuclease ABC subunit B [Azoarcus sp. BH72]
          Length = 691

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/687 (54%), Positives = 502/687 (73%), Gaps = 14/687 (2%)

Query: 122 IWTPHRSWSINNHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVT 177
           + +P  S S ++ +K +TF    F++   + P+GDQP AI  L +G+      Q LLGVT
Sbjct: 1   MQSPADSGS-DSTAKVLTFEGSPFRLHQPFPPAGDQPEAIRLLCEGVEDGLMYQTLLGVT 59

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           GSGKT+TMA VI  M RPA+V+APNK LAAQLY+EF+ F P NAVEYFVSYYDYYQPEAY
Sbjct: 60  GSGKTYTMANVIARMGRPALVLAPNKTLAAQLYAEFREFLPENAVEYFVSYYDYYQPEAY 119

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
           VP+ D +IEK+SS+NE I++MR SAT+SL+ER D ++V++VSCIYGIG    Y  MI+ L
Sbjct: 120 VPQRDLFIEKDSSVNEHIEQMRLSATKSLMERRDVVIVATVSCIYGIGDPVDYHAMILHL 179

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           + G+ V  ++L++ LV  QY R D+   RGTFRV GD I++FPS   ++A R+ MF ++I
Sbjct: 180 REGERVSHRDLIARLVAMQYTRADLDFRRGTFRVRGDVIDVFPSENAELAVRIEMFDDEI 239

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           E ++ F PLTG   + +    +Y +SHYVTPR T+  A++ IKEELK R+   ++EG+L+
Sbjct: 240 EHLTLFDPLTGHLKQKLVRFTVYPSSHYVTPRATVLKAIEAIKEELKDRIAFFQREGKLV 299

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESH 477
           EAQRLEQR  +DLEML   G C+ IENYSR+L+GR PGEPPPTL +Y+P D+L+F+DESH
Sbjct: 300 EAQRLEQRTRFDLEMLNEMGFCKGIENYSRHLSGRGPGEPPPTLIDYLPADALMFIDESH 359

Query: 478 VTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537
           V I Q+ GMY+GD  RK  L  YGFRLPS +DNRPL+FEE+  L P T+ VSATP ++E 
Sbjct: 360 VAIGQVGGMYKGDRSRKENLVGYGFRLPSALDNRPLKFEEFERLMPQTVFVSATPAAYE- 418

Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN--LAAQQGLRILLTVLTKRMA 595
            Q QG +VEQ++RPTGL+DP VEIR A TQV+D+  +I   +A Q+  R+L+TVLTKRMA
Sbjct: 419 AQHQGQVVEQVVRPTGLIDPVVEIRPATTQVDDLLAQIKTRIAVQE--RVLVTVLTKRMA 476

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL +  I+VRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVA
Sbjct: 477 EDLTDYLADNGIKVRYLHSDIDTVERVEIIRDLRLGQFDVLVGINLLREGLDIPEVSLVA 536

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS+ SLIQTIGRAAR+++   ILYAD IT S++ AI ET RRR KQ+  N
Sbjct: 537 ILDADKEGFLRSERSLIQTIGRAARHIHGTAILYADQITDSMRAAIGETERRRTKQIAFN 596

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTNIS----IDAQQLSLSKKKGKAHLKSLRKQM 771
           + + I P++V ++I ++ID +   D A+ + +      A   ++ +K+    +K L K+M
Sbjct: 597 EANGIVPRTVSKRIKDIIDGVYNADGASRDSARVGEARADYAAMDEKQLARAIKKLEKEM 656

Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPY 798
              A NL FE+AA  RDE+ +L+   +
Sbjct: 657 QEHARNLEFEKAAAARDELFKLRERAF 683


>gi|149377056|ref|ZP_01894807.1| excinuclease ABC subunit B [Marinobacter algicola DG893]
 gi|149358714|gb|EDM47185.1| excinuclease ABC subunit B [Marinobacter algicola DG893]
          Length = 687

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/674 (55%), Positives = 484/674 (71%), Gaps = 14/674 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI  L+ GIHS    Q LLGVTGSGKTFT+A VI+ +QRP I+MA
Sbjct: 15  FKVDSPFQPAGDQPKAIDGLVDGIHSGLAHQTLLGVTGSGKTFTIANVIQQVQRPTIIMA 74

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+ FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR 
Sbjct: 75  HNKTLAAQLYGEFREFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEHIEQMRL 134

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G  +SY +M++ L  GD ++Q+ +L  L + QY R 
Sbjct: 135 SATKALLERPDAIIVATVSSIYGLGDPQSYLKMMLHLDRGDQIDQRHILRRLAELQYTRN 194

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R  +RV GD I++FP+  E  A R+ +F +++E +S F PLTG+ +R V  + IY
Sbjct: 195 DVEFHRANYRVRGDVIDVFPAESEKEAIRIELFDDEVENLSYFDPLTGEVLRRVPRVTIY 254

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  +  A++ IK EL  RL +L    RL+EAQRLE+R  YD+EM+   G C 
Sbjct: 255 PKSHYVTPRQKVLDAVERIKVELDERLKQLRDNNRLVEAQRLEERTRYDIEMMLELGYCN 314

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGE PPTLF+Y+P +++L VDESHVTIPQI  MY+GD  RK TL EY
Sbjct: 315 GIENYSRYLSGRQPGEAPPTLFDYLPANAMLVVDESHVTIPQIGAMYKGDRSRKETLVEY 374

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P  + VSATPG++E E   G +VEQ++RPTGL+DP +E
Sbjct: 375 GFRLPSALDNRPMRFDEWERIAPQMLFVSATPGNYEAEHS-GQVVEQVVRPTGLLDPEIE 433

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI L      RIL+T LTKRMAEDLT++L E +IRVRY+HS++ T+E
Sbjct: 434 VRPASTQVDDLLSEIRLRTDVNERILVTTLTKRMAEDLTDFLMEHDIRVRYLHSDIDTVE 493

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 494 RVEIIRDLRRGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 553

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           N++ K ILY D IT S+Q AIDET RRR KQ  HN++H I PQ + +KI ++++      
Sbjct: 554 NLHGKAILYGDRITGSMQRAIDETGRRRAKQAAHNEEHGITPQGLNKKIADIMEGAGGGG 613

Query: 739 -----------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                      E AA       A+  + S ++    +  L   M+ AA +L+FE AAR+R
Sbjct: 614 GRGRRKAERPGEKAAEEAEKYRAKAGNRSPEEVLKEITRLEDDMYKAAADLDFETAARLR 673

Query: 788 DEIKRLKSSPYFQG 801
           D+I  LK +    G
Sbjct: 674 DDISELKEAALRTG 687


>gi|332993965|gb|AEF04020.1| excinuclease ABC subunit B [Alteromonas sp. SN2]
          Length = 671

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/662 (55%), Positives = 491/662 (74%), Gaps = 10/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI  L+ G+ S    Q LLGVTGSGKTFTMA VI  +QRP +++A
Sbjct: 5   FELHSSYKPAGDQPAAIETLVDGLESGLAAQTLLGVTGSGKTFTMANVISEVQRPTLILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR 
Sbjct: 65  HNKTLAAQLYGEMKDFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++V+SVS IYG+G  ESY +M++ L+ GD+++Q+++L  L + QYKR 
Sbjct: 125 SATKALMERRDVVIVASVSAIYGLGDPESYMKMLLHLRQGDTMDQRDILRRLAELQYKRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD I+IFP+  E  A RV +F ++I++IS F PLTG   ++V    ++
Sbjct: 185 DLAFERGTFRVRGDVIDIFPADSEKQAVRVELFDDEIDKISLFDPLTGAVDKSVVRATVF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A+++IK ELK R  +L +  +L+E QR+ QR  +D+EM+   G C 
Sbjct: 245 PKTHYVTPREKILDAIEHIKGELKSRKAQLLEINKLIEEQRISQRTQFDIEMMMELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTL +Y P D L+F+DESHVT+ QI  MY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRAPGEPPPTLLDYFPADGLMFIDESHVTVSQIGAMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  + P T+ VSATPG +EL++  G IVEQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEQICPQTVYVSATPGEYELKKTHGDIVEQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EI+       R+L+T LTKRMAEDL+EYL E  ++VRY+HS++ T+E
Sbjct: 425 VRPVATQVDDVLSEIHKRVALDERVLITTLTKRMAEDLSEYLNEHGVKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+GKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 485 RIEIIRDLRIGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++N + ILY D ITKS++ A+DET RRREKQ+EHNK +NI P  + + I +++D  L E 
Sbjct: 545 HINGRAILYGDKITKSMKKAMDETERRREKQIEHNKANNITPMRLNKPITDIMD--LGEG 602

Query: 741 AATTNISIDAQQLSLSKKKGKA--------HLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           A   +  +  +++   KK+ KA         +  L KQM   A  L FE+AA +RD+++ 
Sbjct: 603 AHPASGKVRLRKVEEKKKQKKAASATELMDQIAELEKQMFEYARELEFEKAASLRDDVEA 662

Query: 793 LK 794
           L+
Sbjct: 663 LR 664


>gi|184159102|ref|YP_001847441.1| excinuclease ABC subunit B [Acinetobacter baumannii ACICU]
 gi|239501080|ref|ZP_04660390.1| excinuclease ABC subunit B [Acinetobacter baumannii AB900]
 gi|332875931|ref|ZP_08443717.1| excinuclease ABC, B subunit [Acinetobacter baumannii 6014059]
 gi|183210696|gb|ACC58094.1| Helicase subunit of the DNA excision repair complex [Acinetobacter
           baumannii ACICU]
 gi|193078002|gb|ABO12922.2| excinuclease ABC subunit B [Acinetobacter baumannii ATCC 17978]
 gi|322509016|gb|ADX04470.1| uvrB [Acinetobacter baumannii 1656-2]
 gi|323518998|gb|ADX93379.1| excinuclease ABC subunit B [Acinetobacter baumannii TCDC-AB0715]
 gi|332735797|gb|EGJ66838.1| excinuclease ABC, B subunit [Acinetobacter baumannii 6014059]
          Length = 673

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/666 (56%), Positives = 485/666 (72%), Gaps = 14/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T Y P+GDQP AI +L+ GI    + QLLLGVTGSGKT+TMA VI   QRP IVMA
Sbjct: 7   FDLVTHYQPAGDQPQAIEKLVNGIEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR 
Sbjct: 67  HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V + E++  LV+ QY R 
Sbjct: 127 SATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVQGDRVSRDEIIRRLVEMQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++  +RGT+R+ G+ I+IFP+  +  A R+ +F ++++ I  F PLTG+ +R V  + IY
Sbjct: 187 ELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVPRVTIY 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  L  A+  IK+EL+ +L    +  +LLEAQR+EQR  YDLEM++  G   
Sbjct: 247 PKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTN 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GE PPTLF+Y+PED+LL +DESHVT+PQI  MY+GD  RK  L  Y
Sbjct: 307 GIENYSRHLSGRPAGEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEEW  + PTTI VSATP  +ELE+ +  +VEQ++RPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPMKFEEWERIVPTTIFVSATPARYELEKSEQ-VVEQVVRPTGLIDPEIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EIN+      R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T+E
Sbjct: 426 VRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 486 RVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS-VKEKIMEV------- 732
           NV  K ILYADTIT S++ AIDET RRR KQ+E N++H I P+S V++ + E+       
Sbjct: 546 NVKGKAILYADTITDSMRKAIDETERRRAKQIEFNEQHGITPRSAVRQAVKEIDTGEVLS 605

Query: 733 ---IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
              ID  +LE A    +S D + +    K    H+  L K+M  A+ +L FE+AARIRDE
Sbjct: 606 DDQIDEKVLEQAQA--LSADERHILSDPKLFSKHITKLEKEMLKASKDLQFEQAARIRDE 663

Query: 790 IKRLKS 795
           I RLK+
Sbjct: 664 IVRLKA 669


>gi|332091058|gb|EGI96148.1| excinuclease ABC, B subunit [Shigella dysenteriae 155-74]
          Length = 673

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/664 (56%), Positives = 480/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D IVV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +    TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VWPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|169795110|ref|YP_001712903.1| excinuclease ABC subunit B [Acinetobacter baumannii AYE]
 gi|213158228|ref|YP_002320279.1| excinuclease ABC, B subunit [Acinetobacter baumannii AB0057]
 gi|215482658|ref|YP_002324854.1| excinuclease ABC, B subunit [Acinetobacter baumannii AB307-0294]
 gi|260556598|ref|ZP_05828816.1| excinuclease ABC, B subunit [Acinetobacter baumannii ATCC 19606]
 gi|301345200|ref|ZP_07225941.1| excinuclease ABC subunit B [Acinetobacter baumannii AB056]
 gi|301510962|ref|ZP_07236199.1| excinuclease ABC subunit B [Acinetobacter baumannii AB058]
 gi|301594561|ref|ZP_07239569.1| excinuclease ABC subunit B [Acinetobacter baumannii AB059]
 gi|332854010|ref|ZP_08435126.1| excinuclease ABC, B subunit [Acinetobacter baumannii 6013150]
 gi|332869710|ref|ZP_08438898.1| excinuclease ABC, B subunit [Acinetobacter baumannii 6013113]
 gi|169148037|emb|CAM85900.1| excinuclease ABC subunit B (ATP-dependent DNA excision repair
           enzyme UvrAC) [Acinetobacter baumannii AYE]
 gi|213057388|gb|ACJ42290.1| excinuclease ABC, B subunit [Acinetobacter baumannii AB0057]
 gi|213988750|gb|ACJ59049.1| excinuclease ABC, B subunit [Acinetobacter baumannii AB307-0294]
 gi|260409857|gb|EEX03157.1| excinuclease ABC, B subunit [Acinetobacter baumannii ATCC 19606]
 gi|332728292|gb|EGJ59674.1| excinuclease ABC, B subunit [Acinetobacter baumannii 6013150]
 gi|332732612|gb|EGJ63845.1| excinuclease ABC, B subunit [Acinetobacter baumannii 6013113]
          Length = 673

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/666 (56%), Positives = 485/666 (72%), Gaps = 14/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T Y P+GDQP AI +L+ GI    + QLLLGVTGSGKT+TMA VI   QRP IVMA
Sbjct: 7   FDLVTHYQPAGDQPQAIEKLVNGIEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR 
Sbjct: 67  HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V + E++  LV+ QY R 
Sbjct: 127 SATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVQGDRVSRDEIIRRLVEMQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++  +RGT+R+ G+ I+IFP+  +  A R+ +F ++++ I  F PLTG+ +R V  + IY
Sbjct: 187 ELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVPRVTIY 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  L  A+  IK+EL+ +L    +  +LLEAQR+EQR  YDLEM++  G   
Sbjct: 247 PKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTN 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GE PPTLF+Y+PED+LL +DESHVT+PQI  MY+GD  RK  L  Y
Sbjct: 307 GIENYSRHLSGRPAGEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEEW  + PTTI VSATP  +ELE+ +  +VEQ++RPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPMKFEEWERIVPTTIFVSATPARYELEKSEQ-VVEQVVRPTGLIDPEIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EIN+      R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T+E
Sbjct: 426 VRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 486 RVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS-VKEKIMEV------- 732
           NV  K ILYADTIT S++ AIDET RRR KQ+E N++H I P+S V++ + E+       
Sbjct: 546 NVKGKAILYADTITDSMRKAIDETERRRTKQIEFNEQHGITPRSAVRQAVKEIDTGEVLS 605

Query: 733 ---IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
              ID  +LE A    +S D + +    K    H+  L K+M  A+ +L FE+AARIRDE
Sbjct: 606 DDQIDEKVLEQAQA--LSADERHILSDPKLFSKHITKLEKEMLKASKDLQFEQAARIRDE 663

Query: 790 IKRLKS 795
           I RLK+
Sbjct: 664 IVRLKA 669


>gi|56460889|ref|YP_156170.1| excinuclease ABC subunit B [Idiomarina loihiensis L2TR]
 gi|81362853|sp|Q5QXB8|UVRB_IDILO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56179899|gb|AAV82621.1| Helicase subunit of the DNA excision repair complex, UvrB
           [Idiomarina loihiensis L2TR]
          Length = 677

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/668 (55%), Positives = 490/668 (73%), Gaps = 16/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  LL  + +    Q+LLGVTGSGKTFTMA VIE  QRP +++A
Sbjct: 5   FELVSKYKPAGDQPKAIESLLDNLDAGLAHQVLLGVTGSGKTFTMANVIERSQRPTLILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K +FP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEYFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++V+SVS IYG+G  ESY +M++ L+ GD ++Q+++L  L + QYKR 
Sbjct: 125 SATKALMERRDVVLVASVSAIYGLGDPESYMKMMLHLRRGDIIDQRDVLRRLAQLQYKRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D    RGT+RV GD I+IFP+  E++A R+ +F ++++ IS F PLTGQ   ++V    I
Sbjct: 185 DAAFERGTYRVRGDVIDIFPAESEEIAVRLELFDSEVDRISFFEPLTGQITEKDVARATI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  L  A++ IK+ELK R   L K+ +L+E QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPREVLVKAIEKIKDELKDRRDILLKQNKLIEEQRINQRTQFDIEMMLELGYC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR PGEPPPTL +Y+P+++LL +DESHVT+ QI  MY+GD  RK  L E
Sbjct: 305 SGIENYSRYLSGRAPGEPPPTLMDYLPDNALLIIDESHVTVSQIGAMYKGDRSRKENLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+F+E+  + P T+ VSATPG +ELE+    +VEQ++RPTGL+DP +
Sbjct: 365 YGFRLPSALDNRPLKFDEFEAIAPQTLYVSATPGKYELERSGNEVVEQVVRPTGLIDPQI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI L  + G R+L T LTK+M+EDL +YL E  I+VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLMSEIRLRTEVGERVLATTLTKKMSEDLADYLDEHGIKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERMEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN + ILYAD IT S+Q A+DET RRREKQ+ +NK+H I PQ + + I +V+D  L +
Sbjct: 545 RNVNGRAILYADRITGSMQRAMDETDRRREKQIAYNKEHGITPQGLNKDITDVMD--LGQ 602

Query: 740 DAATTNISIDAQQLS----------LSKKKGKAHLKSL---RKQMHLAADNLNFEEAARI 786
            +A    S   + L+          +  K  KA +K +    K+M+ AA NL FE+A ++
Sbjct: 603 GSAKARKSKAEKALAEVASGYDARTVVVKDAKAVMKEIDAKEKEMYKAAQNLEFEQAGKL 662

Query: 787 RDEIKRLK 794
           RDE+  L+
Sbjct: 663 RDEVAELR 670


>gi|66045214|ref|YP_235055.1| excinuclease ABC subunit B [Pseudomonas syringae pv. syringae
           B728a]
 gi|75502487|sp|Q4ZV05|UVRB_PSEU2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|63255921|gb|AAY37017.1| Excinuclease ABC, B subunit [Pseudomonas syringae pv. syringae
           B728a]
 gi|330941972|gb|EGH44669.1| excinuclease ABC subunit B [Pseudomonas syringae pv. pisi str.
           1704B]
 gi|330974324|gb|EGH74390.1| excinuclease ABC subunit B [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 671

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/665 (56%), Positives = 487/665 (73%), Gaps = 14/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +V+A
Sbjct: 4   FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+I+P+  +  A RV +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLIEAMENIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G IVEQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDPQIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  EI+  A    R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ T+E
Sbjct: 423 IRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           N+N + ILYAD IT S++ AI ET RRREKQ+  N +H I P+ V + + ++++      
Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGATVPG 602

Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                   +  AA  N   + +  S S+   +  ++ L ++M+  A +L FE AA++RDE
Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660

Query: 790 IKRLK 794
           I +L+
Sbjct: 661 IGKLR 665


>gi|24374050|ref|NP_718093.1| excinuclease ABC subunit B [Shewanella oneidensis MR-1]
 gi|24348524|gb|AAN55537.1|AE015692_7 excinuclease ABC, B subunit [Shewanella oneidensis MR-1]
          Length = 673

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/667 (55%), Positives = 486/667 (72%), Gaps = 14/667 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ + P+GDQP AIA+L+ G+ S    Q LLGVTGSGKTFT+A VI  + RP I+
Sbjct: 4   SVFQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAKLGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD++ Q+++L  L + QY 
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDTMGQRDILKRLSELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGTFRV G+ I+IFP+  +  A RV +F ++IE +SEF PLTGQ ++ +    
Sbjct: 184 RNDIELQRGTFRVRGEVIDIFPADSDRYAIRVELFDDEIERLSEFDPLTGQIVKRIARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A + IK+EL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKTHYVTPREKILEATELIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLVIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP S+ELE+  G IVEQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNSYELEKSGGEIVEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    QV+D+  E+        R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVGIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD IT S+  AI ET RRREKQ  +N +H I P+ V ++I +V+D   +
Sbjct: 544 ARNVNGKVILYADRITNSMAKAIGETERRREKQRLYNLEHGIVPKGVVKRITDVMD---V 600

Query: 739 EDAATTNISIDAQQLS-LSKKKGKAH----------LKSLRKQMHLAADNLNFEEAARIR 787
           +D            L  +++ K K +          +  L KQMH  A NL FE+AA +R
Sbjct: 601 DDGREAEKGHGQASLGRVAEPKAKRYHADAAQLSHDIDKLEKQMHEHARNLEFEQAAALR 660

Query: 788 DEIKRLK 794
           DE+KRL+
Sbjct: 661 DEVKRLR 667


>gi|213970442|ref|ZP_03398570.1| excinuclease ABC, B subunit [Pseudomonas syringae pv. tomato T1]
 gi|301385866|ref|ZP_07234284.1| excinuclease ABC subunit B [Pseudomonas syringae pv. tomato Max13]
 gi|302063920|ref|ZP_07255461.1| excinuclease ABC subunit B [Pseudomonas syringae pv. tomato K40]
 gi|302130087|ref|ZP_07256077.1| excinuclease ABC subunit B [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213924760|gb|EEB58327.1| excinuclease ABC, B subunit [Pseudomonas syringae pv. tomato T1]
 gi|330875745|gb|EGH09894.1| excinuclease ABC subunit B [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 671

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/665 (55%), Positives = 487/665 (73%), Gaps = 14/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +V+A
Sbjct: 4   FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVLHVDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+I+P+  +  A R+ +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLVEAMEGIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G IVEQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDPQIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  EI+  A    R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ T+E
Sbjct: 423 IRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           N+N + ILYAD IT S++ AI ET RRREKQ+  N +H I P+ V + + ++++      
Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGATVPG 602

Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                   +  AA  N   + +  S S+   +  ++ L ++M+  A +L FE AA++RDE
Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660

Query: 790 IKRLK 794
           I +L+
Sbjct: 661 IGKLR 665


>gi|146307759|ref|YP_001188224.1| excinuclease ABC subunit B [Pseudomonas mendocina ymp]
 gi|145575960|gb|ABP85492.1| Excinuclease ABC subunit B [Pseudomonas mendocina ymp]
          Length = 671

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/664 (55%), Positives = 488/664 (73%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +V+A
Sbjct: 4   FQLVTRFKPAGDQPEAIRQMIEGLEAGLSHQTLLGVTGSGKTFSVANVIAQVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D IVV +VS IYG+GS E Y +M++ L  GD ++Q+ LL  L + QY R 
Sbjct: 124 SATKALIERKDVIVVCTVSSIYGLGSPEEYLKMVLHLDRGDKMDQRALLRRLAELQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+IFP+  +  A RV +F +++E IS F PLTG+ I+ +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESISAFDPLTGEVIQKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A++ IK EL+ RL  L    +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLLEAVEQIKVELQQRLEYLRGANKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTL++Y+P+D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPDDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEEW    P TI VSATPG +E E   G ++EQ++RPTGLVDP VE
Sbjct: 364 GFRLPSALDNRPMRFEEWEAASPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDPAVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R ARTQV+D+  EI L    G R+L+T LTKRMAEDLT+YL + +++VRY+HS++ T+E
Sbjct: 423 VRPARTQVDDLLSEIRLRVAAGDRVLVTTLTKRMAEDLTDYLGDHDVKVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD +T S+Q AI ET RRR KQ+  N+ + I P+ V++ + ++++  ++  
Sbjct: 543 NLNGRAILYADNMTGSMQRAIGETERRRAKQIAFNEANGIVPKGVQKDVKDILEGAVVP- 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS----------LRKQMHLAADNLNFEEAARIRDEI 790
            A +N      + +    + ++ L+S          L ++M+  A +L FE AA++RDEI
Sbjct: 602 GARSNKRKGMAKAAEESARYESELRSPSEITKRIRQLEEKMYALARDLEFEAAAQLRDEI 661

Query: 791 KRLK 794
           ++L+
Sbjct: 662 QKLR 665


>gi|229846849|ref|ZP_04466956.1| excinuclease ABC subunit B [Haemophilus influenzae 7P49H1]
 gi|229810338|gb|EEP46057.1| excinuclease ABC subunit B [Haemophilus influenzae 7P49H1]
 gi|309972984|gb|ADO96185.1| Excinuclease ABC, subunit B [Haemophilus influenzae R2846]
          Length = 679

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/671 (55%), Positives = 489/671 (72%), Gaps = 15/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 10  FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 70  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + QY R 
Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V    IY
Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 250 PKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLDPLIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 430 IRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD+ITKS++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D   +  
Sbjct: 550 NLNGKAILYADSITKSMEKAITETNRRREKQIKYNEEHGIVPQALNKKVGELLD---IGQ 606

Query: 741 AATTNISIDAQQLSLS------------KKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            A      + Q+  ++             K+ +  +K L +QM+  A +L FE+AA IR+
Sbjct: 607 GANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRN 666

Query: 789 EIKRLKSSPYF 799
           ++ +L+    F
Sbjct: 667 QLHQLREQFVF 677


>gi|262376040|ref|ZP_06069271.1| excinuclease ABC, B subunit [Acinetobacter lwoffii SH145]
 gi|262309134|gb|EEY90266.1| excinuclease ABC, B subunit [Acinetobacter lwoffii SH145]
          Length = 673

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/667 (55%), Positives = 489/667 (73%), Gaps = 10/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ T Y P+GDQP AI +L+KGI      QLLLGVTGSGKT+TMA VI   QRP IVMA
Sbjct: 7   FELVTSYQPAGDQPQAIEKLVKGIEQGFHDQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR 
Sbjct: 67  HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D I+V+SVS IYG+G   +Y  M++ +  GD + + +++  LV+ QY R 
Sbjct: 127 SATRSLLERRDTIIVASVSAIYGLGDPNAYMSMLLHVVEGDRIGRDDIIRRLVEMQYSRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++  +RGT+R+ G+ I+IFP+  +  A R+ +F ++++ I  F PLTG+ +R V  + IY
Sbjct: 187 ELEFLRGTYRIRGEIIDIFPAESDQDAIRIELFDDEVDSIRWFDPLTGKMVRKVPRVTIY 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  L+ A++ I++ELK RL+   +  +LLEAQR+EQR  YDLEM++  G   
Sbjct: 247 PKSHYVTPKDNLSRAIETIRDELKERLVFFRENDKLLEAQRIEQRTRYDLEMMQQLGYTN 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR+ GE PPTLF+YIP+D+LL +DESHVT+PQI  MY+GD  RK  L  Y
Sbjct: 307 GIENYSRHLSGRSAGEAPPTLFDYIPDDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEEW  + PTT+ VSATP  +ELE+ Q  IVEQ++RPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPMKFEEWERIVPTTVYVSATPARYELEKSQQ-IVEQVVRPTGLIDPEIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+DV  EINL      R+L+T LTKRMAEDLT YL E  I+V Y+HS++ T+E
Sbjct: 426 IRPVLTQVDDVLSEINLRKDINERVLVTTLTKRMAEDLTSYLKEYGIKVAYLHSDIDTVE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G  DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 486 RVKIIHELRTGVHDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--ILL 738
           N+  K ILYAD IT S+Q AI+ET RRR KQ++ N++H I P+S   ++++ ID   +L 
Sbjct: 546 NLKGKAILYADRITDSMQKAIEETDRRRAKQIQFNEEHGITPRSAVRQVIKEIDTGEVLD 605

Query: 739 EDAATTNISIDAQQLSLSKKKGKA-------HLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           +D+    +S  A+ +S  ++   A       H+  L K+M  A+  L FE+AAR+RDEI 
Sbjct: 606 DDSIELKVSDQARAISADERHIMADPKMFAKHINKLEKEMLKASKELQFEQAARMRDEIV 665

Query: 792 RLKSSPY 798
           RLK+  +
Sbjct: 666 RLKAQMF 672


>gi|294651009|ref|ZP_06728349.1| excinuclease ABC subunit B [Acinetobacter haemolyticus ATCC 19194]
 gi|292823110|gb|EFF81973.1| excinuclease ABC subunit B [Acinetobacter haemolyticus ATCC 19194]
          Length = 680

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/664 (56%), Positives = 482/664 (72%), Gaps = 10/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ T+Y P+GDQP AI +L+ GI    + QLLLGVTGSGKT+TMA VI   QRP IVMA
Sbjct: 13  FELVTNYQPAGDQPQAIEKLVNGIEHGFRNQLLLGVTGSGKTYTMANVIAKTQRPTIVMA 72

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR 
Sbjct: 73  HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAINDHIDQMRL 132

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V + +++  LV+ QY R 
Sbjct: 133 SATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHIVQGDRVSRDDIIRRLVEMQYTRN 192

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++  +RGT+R+ G+ I+IFP+  +  A RV +F ++++ I  F PLTG+ +R V  + IY
Sbjct: 193 ELEFLRGTYRIRGEIIDIFPAESDQDAIRVELFDDEVDSIRWFDPLTGKLVRKVPRVTIY 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  L  A+  IK+ELK +L   +   +LLEAQR+EQR  YDLEM++  G   
Sbjct: 253 PKSHYVTPKDHLTRAIDTIKDELKDQLKFFKDNDKLLEAQRIEQRTRYDLEMMQQLGYTN 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GE PPTLF+Y+PED+LL +DESHVT+PQI  MY+GD  RK  L  Y
Sbjct: 313 GIENYSRHLSGRTAGEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEEW  + PTT+ VSATP  +ELE+ +  +VEQ++RPTGL+DP +E
Sbjct: 373 GFRLPSALDNRPMKFEEWERIVPTTVFVSATPALYELEKSEQ-VVEQVVRPTGLIDPEIE 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EIN+  Q   R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T+E
Sbjct: 432 VRPVLTQVDDVLSEINIRRQLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G  DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 492 RVKIIHELRTGVHDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--ILL 738
           NV  K ILYAD IT S++ AIDET RRR KQ+E N+ H I P+S   + ++ ID   +L 
Sbjct: 552 NVKGKAILYADRITDSMRKAIDETDRRRNKQIEFNELHGITPRSAVRQTIKEIDTGEVLT 611

Query: 739 EDAATTN-------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           +D    N       IS D Q L    K    H+  L K+M  A+  L FE+AAR+RDEI 
Sbjct: 612 DDQIDENALQQAQSISADEQHLLSDPKLFAKHIGKLEKEMLKASKELQFEQAARLRDEIV 671

Query: 792 RLKS 795
           RLK+
Sbjct: 672 RLKA 675


>gi|152997223|ref|YP_001342058.1| excinuclease ABC subunit B [Marinomonas sp. MWYL1]
 gi|150838147|gb|ABR72123.1| excinuclease ABC, B subunit [Marinomonas sp. MWYL1]
          Length = 675

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/663 (55%), Positives = 488/663 (73%), Gaps = 10/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AI +L++G+ +    Q LLGVTGSGKT+T+A VI  ++RP IVMA
Sbjct: 5   FQVVSSYSPAGDQPKAIEKLVRGVEAGLAHQTLLGVTGSGKTYTIANVISQVKRPTIVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYV  +DT+IEK++S+NE I++MR 
Sbjct: 65  HNKTLAAQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVAASDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G  +SY +M++ L  GD ++Q+++L  L + QY R 
Sbjct: 125 SATKALLEREDVIIVATVSAIYGLGDPQSYLKMMLHLDRGDRIDQRDVLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD IE+FP+  ED A R+ +F +++E +S   PLT + IR V  + IY
Sbjct: 185 DLVLERGNFRVRGDVIEVFPADSEDTAIRIELFDDEVETLSMIDPLTNKTIRKVPRVTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTP+ T+  A++ IK EL  RL +L+   +L+E QRL+QR  YDLEM++  G C 
Sbjct: 245 PKTHYVTPKETVQAAIERIKVELDQRLEQLKSMNKLVEMQRLDQRTRYDLEMMQELGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P ++LL +DESHVT+ QI  MY+GD  RK  L EY
Sbjct: 305 GIENYSRYLSGREEGSPPPTLFDYLPANALLVIDESHVTVSQIGAMYKGDRSRKENLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEEW  ++P TI VSATPG +E E+ Q  +VEQI+RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEWEQIKPQTIFVSATPGKYE-EEHQDWVVEQIVRPTGLIDPILE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EINL    G R+L+T LTKRMAEDL++YL +  +RVRY+HS++ T+E
Sbjct: 424 VRPVATQVDDLLSEINLRTPIGERVLVTTLTKRMAEDLSDYLGDHGVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSEKSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILYAD IT S++ AI ET RRREKQ  +N++H I P  + + + ++++      
Sbjct: 544 NVNGKAILYADRITGSMERAISETDRRREKQKAYNEEHGITPVGITKSVEDIMEGAYNPG 603

Query: 741 AA-----TTNISIDAQQLSLSKKKGKAHLKS----LRKQMHLAADNLNFEEAARIRDEIK 791
           A      T  ++  A+   +   +  A ++     L+K+M LA++ L FE AA  RD+I+
Sbjct: 604 AGKRSNKTKKVAETAKDYQVESMEDVAQVRKAMIQLQKEMMLASEELKFELAAGYRDQIR 663

Query: 792 RLK 794
           +L+
Sbjct: 664 QLQ 666


>gi|189351000|ref|YP_001946628.1| excinuclease ABC subunit B [Burkholderia multivorans ATCC 17616]
 gi|189335022|dbj|BAG44092.1| excinuclease ABC subunit B [Burkholderia multivorans ATCC 17616]
          Length = 704

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/698 (54%), Positives = 498/698 (71%), Gaps = 20/698 (2%)

Query: 125 PHRSWSINNH----------SKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKV 170
           PHR  S++ H          SK +TF    FQ+   Y P+GDQP AI  L++G+      
Sbjct: 3   PHRLHSMSEHHAEIGDTLDESKFVTFEGSPFQLYQPYPPAGDQPTAIDTLVEGVQDGLAF 62

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           Q LLGVTGSGKTFTMA  I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYD
Sbjct: 63  QTLLGVTGSGKTFTMANTIARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYD 122

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
           YYQPEAYVP+ D +IEK+SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y
Sbjct: 123 YYQPEAYVPQRDLFIEKDSSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEY 182

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            QMI+ L+ GD + Q+++++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV
Sbjct: 183 HQMILTLRTGDKLGQRDVIARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRV 242

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F +++E +  F PLTG+  + +    +Y +SHYVTPR T+  A++ IKEEL+ RL   
Sbjct: 243 ELFDDEVETLQLFDPLTGRVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKEELRERLEFF 302

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +EG+L+EAQRLEQR  +DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L
Sbjct: 303 HREGKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAL 362

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
           + +DESHV I Q++GMY GD  RK  L  YGFRLPS +DNRPL+F E+       + VSA
Sbjct: 363 MLLDESHVLIGQLNGMYNGDRARKENLVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSA 422

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
           TP  +E ++  G I EQ++RPTGLVDP +E+R A +QV+DV  EIN   + G R+L+TVL
Sbjct: 423 TPADYE-QRVTGQIAEQVVRPTGLVDPEIEVRPASSQVDDVLTEINARVKAGERVLITVL 481

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKRMAE LTE+L +  I+VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE
Sbjct: 482 TKRMAEQLTEFLADHGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPE 541

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
             LVAILDADKEGFLR++ SLIQTIGRAARNVN K ILYADT+T+S++ AI ET RRR K
Sbjct: 542 VSLVAILDADKEGFLRAERSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAK 601

Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKS 766
           Q+ +N+K  I P+ V ++I ++ID +   D A   +  +AQQ +    +S+K+    +K 
Sbjct: 602 QIAYNEKMGITPRGVVKRIKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQLAKEIKR 660

Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
           L KQM   A NL FE+AA  RD++  L+   +   + D
Sbjct: 661 LEKQMADYAKNLEFEKAAATRDQLALLRERVFGANVGD 698


>gi|161524243|ref|YP_001579255.1| excinuclease ABC subunit B [Burkholderia multivorans ATCC 17616]
 gi|160341672|gb|ABX14758.1| excinuclease ABC, B subunit [Burkholderia multivorans ATCC 17616]
          Length = 732

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/698 (54%), Positives = 498/698 (71%), Gaps = 20/698 (2%)

Query: 125 PHRSWSINNH----------SKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKV 170
           PHR  S++ H          SK +TF    FQ+   Y P+GDQP AI  L++G+      
Sbjct: 31  PHRLHSMSEHHAEIGDTLDESKFVTFEGSPFQLYQPYPPAGDQPTAIDTLVEGVQDGLAF 90

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           Q LLGVTGSGKTFTMA  I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYD
Sbjct: 91  QTLLGVTGSGKTFTMANTIARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYD 150

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
           YYQPEAYVP+ D +IEK+SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y
Sbjct: 151 YYQPEAYVPQRDLFIEKDSSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEY 210

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            QMI+ L+ GD + Q+++++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV
Sbjct: 211 HQMILTLRTGDKLGQRDVIARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRV 270

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F +++E +  F PLTG+  + +    +Y +SHYVTPR T+  A++ IKEEL+ RL   
Sbjct: 271 ELFDDEVETLQLFDPLTGRVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKEELRERLEFF 330

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +EG+L+EAQRLEQR  +DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L
Sbjct: 331 HREGKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAL 390

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
           + +DESHV I Q++GMY GD  RK  L  YGFRLPS +DNRPL+F E+       + VSA
Sbjct: 391 MLLDESHVLIGQLNGMYNGDRARKENLVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSA 450

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
           TP  +E ++  G I EQ++RPTGLVDP +E+R A +QV+DV  EIN   + G R+L+TVL
Sbjct: 451 TPADYE-QRVTGQIAEQVVRPTGLVDPEIEVRPASSQVDDVLTEINARVKAGERVLITVL 509

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKRMAE LTE+L +  I+VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE
Sbjct: 510 TKRMAEQLTEFLADHGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPE 569

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
             LVAILDADKEGFLR++ SLIQTIGRAARNVN K ILYADT+T+S++ AI ET RRR K
Sbjct: 570 VSLVAILDADKEGFLRAERSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAK 629

Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKS 766
           Q+ +N+K  I P+ V ++I ++ID +   D A   +  +AQQ +    +S+K+    +K 
Sbjct: 630 QIAYNEKMGITPRGVVKRIKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQLAKEIKR 688

Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
           L KQM   A NL FE+AA  RD++  L+   +   + D
Sbjct: 689 LEKQMADYAKNLEFEKAAATRDQLALLRERVFGANVGD 726


>gi|33152480|ref|NP_873833.1| excinuclease ABC subunit B [Haemophilus ducreyi 35000HP]
 gi|71153393|sp|Q7VLL3|UVRB_HAEDU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|33148703|gb|AAP96222.1| excinuclease ABC subunit B [Haemophilus ducreyi 35000HP]
          Length = 675

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/662 (56%), Positives = 482/662 (72%), Gaps = 8/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP+AI +L +G+      Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 8   FILNSPFAPSGDQPSAIKKLTEGLQDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR 
Sbjct: 68  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQIEQMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G V +Y QM++ L++G  + Q+++L+ L + QY R 
Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVNAYMQMMLHLQVGAIINQRDILARLAELQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+  +++A R+ +F ++I+ +S F PLTG     +    IY
Sbjct: 188 DQAFQRSTFRVRGEVIDIFPAESDEIALRIELFDDEIDNLSLFDPLTGHSFGKIPRYTIY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  + TA+  IK EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 248 PKTHYVTPRERILTAIDQIKNELTGRQDYFIKEHKLLEEQRITQRTQFDIEMINELGYCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL +Y
Sbjct: 308 GIENYSRYLSGRQEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G I++Q++RPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLKFEEFERLSPQTIYVSATPGNYELEKSNGDIIDQVVRPTGLLDPIIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   +QV+DV  EI        R+L+T LTK+MAEDLT+YL E  +RVRY+HS++ T+E
Sbjct: 428 VRPVASQVDDVLSEIQQRVALDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS++SLIQTIGRAAR
Sbjct: 488 RVEIIHDLRIGMFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSESSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738
           N+N K ILYAD IT S+Q AI ET RRREKQ ++N++HNI PQ++ +K+ E++D      
Sbjct: 548 NLNGKAILYADRITHSMQKAITETERRREKQQKYNQEHNIIPQALNKKVRELLDIGQTDK 607

Query: 739 EDAATTNISIDAQQLSLSKKKGKA------HLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           +      + I  Q  S +    K+       LK L +QM   A +L FE+AA +RD+I +
Sbjct: 608 QKKGKQAVKIAEQSASYTPNAPKSRQALEKELKQLTQQMQKLAKDLEFEKAAAVRDKIGQ 667

Query: 793 LK 794
           LK
Sbjct: 668 LK 669


>gi|24112147|ref|NP_706657.1| excinuclease ABC subunit B [Shigella flexneri 2a str. 301]
 gi|30062264|ref|NP_836435.1| excinuclease ABC subunit B [Shigella flexneri 2a str. 2457T]
 gi|110804780|ref|YP_688300.1| excinuclease ABC subunit B [Shigella flexneri 5 str. 8401]
 gi|81839440|sp|Q83S42|UVRB_SHIFL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|122957558|sp|Q0T6I1|UVRB_SHIF8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|24050984|gb|AAN42364.1| excision nuclease subunit B [Shigella flexneri 2a str. 301]
 gi|30040509|gb|AAP16241.1| excision nuclease subunit B [Shigella flexneri 2a str. 2457T]
 gi|110614328|gb|ABF02995.1| excision nuclease subunit B [Shigella flexneri 5 str. 8401]
 gi|281600105|gb|ADA73089.1| UvrABC system protein B [Shigella flexneri 2002017]
 gi|313650323|gb|EFS14735.1| excinuclease ABC, B subunit [Shigella flexneri 2a str. 2457T]
 gi|332760521|gb|EGJ90810.1| excinuclease ABC, B subunit [Shigella flexneri 2747-71]
 gi|332763269|gb|EGJ93511.1| excinuclease ABC, B subunit [Shigella flexneri K-671]
 gi|332767941|gb|EGJ98127.1| excinuclease ABC, B subunit [Shigella flexneri 2930-71]
 gi|333021199|gb|EGK40455.1| excinuclease ABC, B subunit [Shigella flexneri K-304]
          Length = 673

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/664 (56%), Positives = 480/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D IVV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM++  G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMDELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D  T S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDRSTPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +  K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMLPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|315126990|ref|YP_004068993.1| excinuclease ABC subunit B [Pseudoalteromonas sp. SM9913]
 gi|315015504|gb|ADT68842.1| excinuclease ABC subunit B [Pseudoalteromonas sp. SM9913]
          Length = 664

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/658 (55%), Positives = 488/658 (74%), Gaps = 7/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++ + P+GDQP AIAQL +G+ +    Q LLG TG+GKTFTMA +I  + RP I+MA
Sbjct: 5   FQLESKFKPAGDQPTAIAQLCEGLEAGLAHQTLLGATGTGKTFTMANIISDLNRPTIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYV  +DT+IEK++SINE I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVVASDTFIEKDASINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  +SY +M++ LK+G+ V+Q+++L  L + QY R 
Sbjct: 125 SATKALLERRDTIIVASVSAIYGLGDPDSYMKMMLLLKVGEKVDQRDMLRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGT+RV G+ ++IFP+  +  A RV MF +++E +S F PLTG   +++    IY
Sbjct: 185 DIDFSRGTYRVRGEVVDIFPAESDTYAVRVEMFDDEVERLSIFDPLTGAVEKHIVRATIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK ELK R  +L    +L+E QR+ QR  YD+EM+   G C 
Sbjct: 245 PKTHYVTPREKILEAIEKIKVELKERRAQLLSANKLVEEQRIAQRTQYDIEMMTELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PG+PPPTL +Y+P+D+L+ +DESHVT+ QI  MY+GD  RK  L EY
Sbjct: 305 GIENYSRYLSGRTPGDPPPTLLDYLPDDALMIIDESHVTVSQIGAMYKGDRSRKENLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS MDNRPLRFEE+  + P TI VSATPG +ELE+  G + EQ+IRPTGL+DP +E
Sbjct: 365 GFRMPSAMDNRPLRFEEFEAIAPQTIYVSATPGDFELERSNGEVAEQVIRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI  + ++G R+L+T LTKRMAEDLT+YL E N++VRY+HS++ T+E
Sbjct: 425 VRPVGDQVDDLLSEIYKSVEKGERVLVTTLTKRMAEDLTDYLSEHNVKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRAGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSARSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +++ + ILY D ITKS+  AIDET RRR+ Q  +N KH I P+++ +KI++V+D  + ED
Sbjct: 545 HLDGRAILYGDRITKSMAKAIDETQRRRDIQHAYNVKHGIEPKALIKKILDVMD--VGED 602

Query: 741 AATTN----ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A+  +    I  +++++ LS K+    +K L  +MH  A +L FE+AA +RDEI  L+
Sbjct: 603 ASPQDNLQLIRKESKKI-LSAKEIATQIKQLETKMHAYASDLEFEKAASVRDEIHELQ 659


>gi|221198516|ref|ZP_03571562.1| excinuclease ABC, B subunit [Burkholderia multivorans CGD2M]
 gi|221208534|ref|ZP_03581535.1| excinuclease ABC, B subunit [Burkholderia multivorans CGD2]
 gi|221171525|gb|EEE03971.1| excinuclease ABC, B subunit [Burkholderia multivorans CGD2]
 gi|221182448|gb|EEE14849.1| excinuclease ABC, B subunit [Burkholderia multivorans CGD2M]
          Length = 732

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/698 (54%), Positives = 498/698 (71%), Gaps = 20/698 (2%)

Query: 125 PHRSWSINNH----------SKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKV 170
           PHR  S++ H          SK +TF    FQ+   Y P+GDQP AI  L++G+      
Sbjct: 31  PHRLHSMSEHHAEIGDTLDESKFVTFEGSPFQLYQPYPPAGDQPTAIDTLVEGVQDGLAF 90

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           Q LLGVTGSGKTFTMA  I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYD
Sbjct: 91  QTLLGVTGSGKTFTMANTIARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYD 150

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
           YYQPEAYVP+ D +IEK+SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y
Sbjct: 151 YYQPEAYVPQRDLFIEKDSSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEY 210

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            QMI+ L+ GD + Q+++++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV
Sbjct: 211 HQMILTLRTGDKLGQRDVIARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRV 270

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F +++E +  F PLTG+  + +    +Y +SHYVTPR T+  A++ IKEEL+ RL   
Sbjct: 271 ELFDDEVETLQLFDPLTGRVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKEELRERLEFF 330

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +EG+L+EAQRLEQR  +DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L
Sbjct: 331 HREGKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAL 390

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
           + +DESHV I Q++GMY GD  RK  L  YGFRLPS +DNRPL+F E+       + VSA
Sbjct: 391 MLLDESHVLIGQLNGMYNGDRARKENLVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSA 450

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
           TP  +E ++  G I EQ++RPTGLVDP +E+R A +QV+DV  EIN   + G R+L+TVL
Sbjct: 451 TPADYE-QRVTGQIAEQVVRPTGLVDPEIEVRPASSQVDDVLTEINARVKAGERVLITVL 509

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKRMAE LTE+L +  I+VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE
Sbjct: 510 TKRMAEQLTEFLADHGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPE 569

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
             LVAILDADKEGFLR++ SLIQTIGRAARNVN K ILYADT+T+S++ AI ET RRR K
Sbjct: 570 VSLVAILDADKEGFLRAERSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAK 629

Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKS 766
           Q+ +N+K  I P+ V ++I ++ID +   D A   +  +AQQ +    +S+K+    +K 
Sbjct: 630 QIAYNEKMGITPRGVVKRIKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQLAKEIKR 688

Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
           L KQM   A NL FE+AA  RD++  L+   +   + D
Sbjct: 689 LEKQMADYAKNLEFEKAAATRDQLALLRERVFGANVRD 726


>gi|28869367|ref|NP_791986.1| excinuclease ABC subunit B [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|81840219|sp|Q884C9|UVRB_PSESM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|28852608|gb|AAO55681.1| excinuclease ABC, B subunit [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331018632|gb|EGH98688.1| excinuclease ABC subunit B [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 671

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/669 (55%), Positives = 487/669 (72%), Gaps = 22/669 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +V+A
Sbjct: 4   FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVLHVDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+I+P+  +  A R+ +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLVEAMEGIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G IVEQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDPQIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  EI+  A    R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ T+E
Sbjct: 423 IRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD IT S++ AI ET RRREKQ+  N +H I P+ V + + +++      +
Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIM------E 596

Query: 741 AATTNISIDAQQLSLSKKKGKA---------------HLKSLRKQMHLAADNLNFEEAAR 785
            AT   S   ++  ++K   ++                ++ L ++M+  A +L FE AA+
Sbjct: 597 GATVPGSRSKKRKGMAKAAEESARYENELRSPSEINKRIRQLEEKMYQLARDLEFEAAAQ 656

Query: 786 IRDEIKRLK 794
           +RDEI +L+
Sbjct: 657 MRDEIGKLR 665


>gi|330899139|gb|EGH30558.1| excinuclease ABC subunit B [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 673

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/665 (55%), Positives = 487/665 (73%), Gaps = 14/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +V+A
Sbjct: 4   FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+I+P+  +  A R+ +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLIEAMENIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G IVEQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDPQIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  EI+  A    R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ T+E
Sbjct: 423 IRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           N+N + ILYAD IT S++ AI ET RRREKQ+  N +H I P+ V + + ++++      
Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGATVPG 602

Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                   +  AA  N   + +  S S+   +  ++ L ++M+  A +L FE AA++RDE
Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660

Query: 790 IKRLK 794
           I +L+
Sbjct: 661 IGKLR 665


>gi|319943708|ref|ZP_08017989.1| excision endonuclease subunit UvrB [Lautropia mirabilis ATCC 51599]
 gi|319742941|gb|EFV95347.1| excision endonuclease subunit UvrB [Lautropia mirabilis ATCC 51599]
          Length = 729

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/688 (55%), Positives = 485/688 (70%), Gaps = 32/688 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++   + P+GDQP AI  L++G+      Q LLGVTGSGKT+TMA VI  + RPA+V+A
Sbjct: 43  YRLHQPFPPAGDQPGAIDALVEGVEDGLSFQTLLGVTGSGKTYTMANVIARLGRPALVLA 102

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E ++FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I+++R 
Sbjct: 103 PNKTLAAQLYAEMRDFFPENAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQLRL 162

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER D ++V SVSCIYGIG+   Y +M + L+ GD + Q++LL  LV  QYKR 
Sbjct: 163 SATKSLLERRDTVIVGSVSCIYGIGNPADYFEMRLVLRKGDRLAQRDLLKQLVAMQYKRN 222

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD+I++FPS   ++A RV MF +++E +  F PLTG+  + +    +Y
Sbjct: 223 DTDFARGTFRVRGDTIDVFPSENAELALRVEMFDDEVEMLQLFDPLTGRIRQQIPRFVVY 282

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A SHYVTPR T+  A+  IK ELK RL     EG+L+EAQRLEQR  +DLEML+  G C+
Sbjct: 283 AASHYVTPRATIVRALDTIKAELKDRLAFFHAEGKLVEAQRLEQRTLFDLEMLQELGFCK 342

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHVTI Q+ GMYRGD  RK TL +Y
Sbjct: 343 GIENYSRHLSGARPGEPPPTLIDYLPPDALMFIDESHVTIGQLGGMYRGDRARKDTLVQY 402

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       I VSATP  +E     G +VEQ++RPTGLVDP VE
Sbjct: 403 GFRLPSALDNRPLTFEEFESKVRQCIFVSATPSDYEATHA-GQVVEQVVRPTGLVDPEVE 461

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+DV  EI     +G R+L+T LTKRMAEDLT++L +  +RVRY+HS++ T+E
Sbjct: 462 VRPATTQVDDVLSEITARVARGHRVLVTTLTKRMAEDLTDFLADHQVRVRYLHSDIDTVE 521

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILD DKEGFLRS+ SLIQTIGRAAR
Sbjct: 522 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDGDKEGFLRSERSLIQTIGRAAR 581

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736
           N+  K ILYAD IT+S+Q AIDET RRR+KQL+ N +H I P+ V +++ E+ID +    
Sbjct: 582 NLEGKAILYADQITRSMQRAIDETARRRQKQLDFNAEHGIVPRGVVKQVRELIDGVYDLS 641

Query: 737 -----------------------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
                                  LLE  A     ID +  +   ++    ++ L KQM  
Sbjct: 642 GTESRPAAPGAAPGHGLGGVDDALLERTAEKLQGIDTRNEAQVSRE----IRRLEKQMAT 697

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQG 801
            A NL+FE+AA++RDE+  LK   +  G
Sbjct: 698 YARNLDFEKAAQVRDELAALKQLLFGSG 725


>gi|237801114|ref|ZP_04589575.1| excinuclease ABC subunit B [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023971|gb|EGI04028.1| excinuclease ABC subunit B [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 671

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/665 (55%), Positives = 487/665 (73%), Gaps = 14/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +V+A
Sbjct: 4   FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+I+P+  +  A RV +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLVEAMENIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G +VEQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDPQIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  EI+  A    R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ T+E
Sbjct: 423 IRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           N+N + ILYAD IT S++ AI ET RRREKQ+  N +H I P+ V + + ++++      
Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGATVPG 602

Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                   +  AA  N   + +  S S+   +  ++ L ++M+  A +L FE AA++RDE
Sbjct: 603 SRSKKRKGMAKAAEENGRYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660

Query: 790 IKRLK 794
           I +L+
Sbjct: 661 IGKLR 665


>gi|319762893|ref|YP_004126830.1| excinuclease abc, b subunit [Alicycliphilus denitrificans BC]
 gi|330824972|ref|YP_004388275.1| excinuclease ABC subunit B [Alicycliphilus denitrificans K601]
 gi|317117454|gb|ADU99942.1| excinuclease ABC, B subunit [Alicycliphilus denitrificans BC]
 gi|329310344|gb|AEB84759.1| excinuclease ABC, B subunit [Alicycliphilus denitrificans K601]
          Length = 695

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/660 (56%), Positives = 487/660 (73%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQP AIA+L++G+   E  Q LLGVTGSGKTFTMA VI  + RPAIV A
Sbjct: 23  FELFQPYPPAGDQPEAIAKLVEGVRDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIVFA 82

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR 
Sbjct: 83  PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 142

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+SLLER D ++V++VS IYGIG+ ESY +M++ L+ GD + Q+E+++ L++ QY+R 
Sbjct: 143 SCTKSLLERRDVVIVATVSAIYGIGNPESYHRMVMTLRAGDRMGQREVIAQLIRMQYQRN 202

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD+I++FP+   ++A R+ +F +++E +  F PLTG+  + +    +Y
Sbjct: 203 DQDFSRGKFRVRGDTIDVFPAEHSELAVRIELFDDEVESLQLFDPLTGRVQQKIPRFTVY 262

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR  +  A++ IKEEL+ RL    +EG+L+EAQRLEQR  +DLEML   G C+
Sbjct: 263 PSSHYVTPRDVVLGAVETIKEELRERLEFFAREGKLVEAQRLEQRTRFDLEMLSEVGHCK 322

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L+G  PGEPP TL +Y+P D+L+F+DESH  I Q++ MY GD  RK TL EY
Sbjct: 323 GIENYTRHLSGAAPGEPPSTLTDYLPPDALMFLDESHQMIGQLNAMYNGDRSRKTTLVEY 382

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATP  +E E   G IV+Q++RPTGLVDP VE
Sbjct: 383 GFRLPSALDNRPLKFEEFEQRMRQVVFVSATPADYEKEHS-GQIVDQVVRPTGLVDPEVE 441

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+DV  EI L  ++  R+L+T LTKRMAE LT+YL +  ++VRY+HS+V T+E
Sbjct: 442 VRPASTQVDDVLQEIRLRVEKNERVLITTLTKRMAEQLTDYLADNGVKVRYLHSDVDTVE 501

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 502 RVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 561

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILYAD +T S++ AI ET RRR KQ+ HN+   I P+S+ +++ ++ID +  E 
Sbjct: 562 NVNGKAILYADRVTDSMKKAIGETERRRAKQIAHNEALGITPRSIVKQVRDLIDGVYSEK 621

Query: 741 AATTNISID------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A    + ++      A+   +S+K     +K L K+M   A NL FE+AAR+RDE+ RLK
Sbjct: 622 AGQEALRLEQEAARHAELEEMSEKDIAREIKRLEKRMLEHARNLEFEQAARVRDELARLK 681


>gi|261492026|ref|ZP_05988601.1| excinuclease ABC subunit B [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261312309|gb|EEY13437.1| excinuclease ABC subunit B [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 672

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/661 (56%), Positives = 488/661 (73%), Gaps = 7/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + RPA+V+A
Sbjct: 8   FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAKLNRPAMVLA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR 
Sbjct: 68  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQIEQMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  + Q+E+LS L + QY R 
Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAMIGQREILSRLAELQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV GD I+I+P+  ++VA RV +F ++IE +S F PLTG+ +  V    IY
Sbjct: 188 DQAFQRSTFRVRGDVIDIYPAESDEVALRVELFDDEIENLSLFDPLTGRSLGKVPRYTIY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 248 PKTHYVTPRERILEAIEQIKVELADRRTYFIKENKLLEEQRIAQRTQFDIEMMNELGYCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GE PPTLF+Y+P D +L +DESHVT+PQI GMYRGD  RK TL +Y
Sbjct: 308 GIENYSRYLSGRKEGEAPPTLFDYMPADGILVIDESHVTVPQIGGMYRGDRARKETLVQY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLRFEEFERLSPQTIYVSATPGAYELEKNPD-VVDQVVRPTGLLDPIIE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS++ T+E
Sbjct: 427 VRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 487 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           N+N K ILY D IT S+Q AI ET RRREKQ+++N++H I PQ++ +K+ E++D      
Sbjct: 547 NLNGKAILYGDRITNSMQKAITETERRREKQMKYNEEHGITPQALNKKVGELLDIGQSVK 606

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           P   + A     +        S+K+ +  LK+L +QM   A +L FE+AA +RD++++LK
Sbjct: 607 PKRGKQAVKKAENSATDYKPKSRKELEKELKTLEQQMRDFAKDLEFEKAAAVRDKLQQLK 666

Query: 795 S 795
           +
Sbjct: 667 A 667


>gi|94309964|ref|YP_583174.1| excinuclease ABC subunit B [Cupriavidus metallidurans CH34]
 gi|93353816|gb|ABF07905.1| excinuclease of nucleotide excision repair, DNA damage recognition
           component [Cupriavidus metallidurans CH34]
          Length = 697

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/676 (55%), Positives = 492/676 (72%), Gaps = 8/676 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           +  K +TF    FQ+   Y P+GDQP AI QL++G+      Q LLGVTGSGKTFTMA V
Sbjct: 12  DEDKFVTFPGSPFQLYQPYSPAGDQPEAIRQLVEGVEDGLSYQTLLGVTGSGKTFTMANV 71

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  M RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 72  IARMGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SLLER D I+V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 132 SSINEHIEQMRLSATKSLLERRDTIIVATVSAIYGIGNPSEYHQMILTLRTGDKISQRDV 191

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+++IFP+   ++A RV +F ++++ +  F PLTG
Sbjct: 192 IARLIAMQYTRNETDFQRGTFRVRGDTLDIFPAEHAEMAVRVELFDDEVDSLQFFDPLTG 251

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK EL+ RL    KE RL+EAQRLEQR  +
Sbjct: 252 RVRQKIPRFTVYPSSHYVTPRETVLRAIEDIKVELRERLDFFYKENRLVEAQRLEQRTRF 311

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML   G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHV I Q++GMY 
Sbjct: 312 DLEMLTELGFCKGIENYSRHLSGAKPGEPPPTLVDYLPPDALMFLDESHVLIGQLNGMYN 371

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL EYGFRLPS +DNRPL+F+E+       + V+ATP ++E E   G +VEQ+
Sbjct: 372 GDRARKTTLVEYGFRLPSALDNRPLKFDEYERKMRQAVFVTATPANYEKEHA-GQVVEQV 430

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A TQV+D+  EI+   +   R+L+T LTKRMAE LTE+L E  ++
Sbjct: 431 VRPTGLVDPVIEVRPATTQVDDLLGEIHQRVKVNERVLVTTLTKRMAEQLTEFLSENGVK 490

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 491 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 550

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN   ILY D +T S+++AI ET RRREKQ+  N+ + I P+ V ++
Sbjct: 551 RSLIQTIGRAARNVNGTAILYGDRMTDSMKVAIRETERRREKQMAFNEANGITPRGVVKR 610

Query: 729 IMEVIDPILLEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           I ++ID +   D     ++  A++     +S+K+    +K L KQM   A NL FE+AA+
Sbjct: 611 IKDIIDGVYNADDVKAELTAAAERARYEDMSEKQVAKEIKRLEKQMLDHAKNLEFEKAAQ 670

Query: 786 IRDEIKRLKSSPYFQG 801
           +RD++ +L+S  +  G
Sbjct: 671 VRDQLAKLRSQVFGAG 686


>gi|299769171|ref|YP_003731197.1| excinuclease ABC subunit B [Acinetobacter sp. DR1]
 gi|298699259|gb|ADI89824.1| excinuclease ABC subunit B [Acinetobacter sp. DR1]
          Length = 673

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/666 (56%), Positives = 482/666 (72%), Gaps = 14/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T Y P+GDQP AI +L+ GI    + QLLLGVTGSGKT+TMA VI   QRP IVMA
Sbjct: 7   FDLVTHYQPAGDQPQAIEKLVNGIEHGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR 
Sbjct: 67  HNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V + E++  LV+ QY R 
Sbjct: 127 SATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVEGDRVSRDEIIRRLVEMQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++  +RGT+R+ G+ I+IFP+  +  A R+ +F ++++ I  F PLTG+ +R V  + IY
Sbjct: 187 ELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVSRVTIY 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  L  A+  IK+EL+ +L    +  +LLEAQR+EQR  YDLEM++  G   
Sbjct: 247 PKSHYVTPKDHLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTN 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GE PPTLF+YIPED+LL +DESHVT+PQI  MY+GD  RK  L  Y
Sbjct: 307 GIENYSRHLSGRPSGEAPPTLFDYIPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEEW  + PTTI VSATP  +ELE+    IVEQ++RPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPMKFEEWERIVPTTIFVSATPAKYELEKSDQ-IVEQVVRPTGLIDPEIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+DV  EIN+      R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T+E
Sbjct: 426 IRPVLTQVDDVLSEINIRKSLNERVLITTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 486 RVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS-VKEKIMEV------- 732
           NV  K ILYAD IT S+Q AIDET RRR KQ+E N+ H I P+S V++ + E+       
Sbjct: 546 NVKGKAILYADRITDSMQKAIDETDRRRAKQIEFNELHGITPRSAVRQAVKEIDSGEVLS 605

Query: 733 ---IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
              ID  +LE A    +S D + +    K    H+  L K M  A+ +L FE+AARIRDE
Sbjct: 606 DDEIDEKVLEQAQA--LSADERHILSDPKLFTKHITKLEKDMLKASKDLQFEQAARIRDE 663

Query: 790 IKRLKS 795
           I RLK+
Sbjct: 664 ILRLKA 669


>gi|114047410|ref|YP_737960.1| excinuclease ABC subunit B [Shewanella sp. MR-7]
 gi|113888852|gb|ABI42903.1| Excinuclease ABC subunit B [Shewanella sp. MR-7]
          Length = 673

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/667 (55%), Positives = 486/667 (72%), Gaps = 14/667 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ + P+GDQP AIA+L+ G+ S    Q LLGVTGSGKTFT+A VI  + RP I+
Sbjct: 4   SVFQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAQLGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD++ Q+++L  L + QY 
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDTMGQRDILKRLSELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGTFRV G+ I+IFP+  +    RV +F ++IE +SEF PLTGQ ++ +    
Sbjct: 184 RNDIELQRGTFRVRGEVIDIFPADSDRYGIRVELFDDEIERLSEFDPLTGQIVKRIARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A + IK+EL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKTHYVTPREKILEATESIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP  +ELE+  G IVEQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNPYELEKSDGEIVEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    QV+D+  E+        R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVNIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD IT+S+  A+ ET RRREKQ  +N +H I P+ V ++I +V+D   +
Sbjct: 544 ARNVNGKVILYADRITQSMAKAMGETERRREKQRAYNLEHGIVPKGVVKRITDVMD---V 600

Query: 739 EDAATTNISIDAQQLS-LSKKKGKAH----------LKSLRKQMHLAADNLNFEEAARIR 787
           +D   +        L  +++ K K +          +  L KQMH  A NL FEEAA +R
Sbjct: 601 DDGRESEKGYRQSSLDKVAEPKAKRYQADAAQLSHDIDKLEKQMHEHARNLEFEEAAALR 660

Query: 788 DEIKRLK 794
           DE+KRL+
Sbjct: 661 DEVKRLR 667


>gi|260779308|ref|ZP_05888200.1| excinuclease ABC subunit B [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605472|gb|EEX31767.1| excinuclease ABC subunit B [Vibrio coralliilyticus ATCC BAA-450]
          Length = 676

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/668 (55%), Positives = 489/668 (73%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +DY PSGDQP AI QLL+G+ S    Q LLGVTGSGKTFT+A VI   QRPAI++A
Sbjct: 5   FDLVSDYQPSGDQPTAINQLLEGLDSGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  +SY QM++ ++ GD ++Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPQSYLQMMLHVRRGDVMDQRDILRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I++FP+  +  A R+ MF ++I+ IS F PLTG  K R++    I
Sbjct: 185 DVAFERGQFRVRGEVIDVFPAESDQDAVRIEMFDDEIDCISIFDPLTGVVKQRDLPRFTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL+ R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRDKILDAIENIKVELESRKKHLLDNNKLLEEQRISQRTQFDIEMMTELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLVIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G + +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELEKSDGEVADQVVRPTGLLDPEL 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + + +  R+L+T LTKRMAEDLTEYL E ++RVRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRSAKDERVLVTTLTKRMAEDLTEYLTEHDVRVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++ K ILYAD++TKS+  A+ ET RRREKQ  +N K  I PQ++K  I ++++   L 
Sbjct: 545 RNISGKAILYADSVTKSMHKAMGETNRRREKQQAYNDKMGIEPQALKRNIKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D A +      +Q+ LSK             ++ +  +  L  QM+  A +L FE AA  
Sbjct: 602 DIAKSKKQRTNKQVPLSKVAEPSQSYNVMTPQQLEKEISKLEAQMYQHAQDLEFEAAAEK 661

Query: 787 RDEIKRLK 794
           RD+I++L+
Sbjct: 662 RDQIEKLR 669


>gi|239996404|ref|ZP_04716928.1| excinuclease ABC subunit B [Alteromonas macleodii ATCC 27126]
          Length = 671

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/660 (55%), Positives = 487/660 (73%), Gaps = 6/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  L+ G+ S    Q LLGVTGSGKTFTMA VI+ +QRP +++A
Sbjct: 5   FELHSKYKPAGDQPKAIEALVDGLESGLAGQTLLGVTGSGKTFTMANVIKEVQRPTLILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++V+SVS IYG+G  ESY +M++ L+ GD+++Q+++L  L + QYKR 
Sbjct: 125 SATKALMERRDVVIVASVSAIYGLGDPESYMKMLLHLRQGDTMDQRDILRRLAELQYKRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD I+IFP+  E  A RV +F ++I++IS F PLTG   ++V    ++
Sbjct: 185 DLAFERGTFRVRGDVIDIFPADSEKQAVRVELFDDEIDKISLFDPLTGAVDKSVIRATVF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A+++IKEEL  R  +L++  +L+E QR+ QR  +D+EM+   G C 
Sbjct: 245 PKTHYVTPREKILNAIEHIKEELGDRKKQLQEANKLIEEQRISQRTQFDIEMMMELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTL +Y P D L+F+DESHVT+ Q+  MYRGD  RK TL E+
Sbjct: 305 GIENYSRYLSGRAPGEPPPTLLDYFPADGLMFIDESHVTVSQVGAMYRGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  + P TI VSATPG +EL++  G IVEQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEQICPQTIYVSATPGDYELKKTDGEIVEQVVRPTGLLDPVIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EI    +   R+L+T LTKRMAEDL+EYL E  ++VRY+HS++ T+E
Sbjct: 425 VRPVATQVDDVLSEIQKRVELDERVLITTLTKRMAEDLSEYLNEHGVKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 485 RIEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +VN K ILYAD+ITKS++ A+DET RRREKQ+ HN+ + I P  + + I +++D      
Sbjct: 545 HVNGKAILYADSITKSMKKAMDETERRREKQMAHNEANGITPMRLNKPITDIMDLGDSAH 604

Query: 741 AATTNISI------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A+  + +        QQ + S  +    +  L KQM   A  L FE+AA +RD+I+ L+
Sbjct: 605 PASGKVRLRKVEEKKKQQKTASATELMDQITELEKQMFEYARELEFEKAASLRDDIEALR 664


>gi|219872236|ref|YP_002476611.1| excinuclease ABC subunit B [Haemophilus parasuis SH0165]
 gi|219692440|gb|ACL33663.1| excinuclease ABC subunit B [Haemophilus parasuis SH0165]
          Length = 671

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/660 (56%), Positives = 489/660 (74%), Gaps = 6/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP AIA+L++G++     Q LLGVTGSGKTFT+A VI  + RPA+V+A
Sbjct: 8   FILHSPFKPSGDQPTAIAKLVEGLNDGLAHQTLLGVTGSGKTFTIANVIATLNRPAMVLA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR 
Sbjct: 68  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQIEQMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G+ ++Q+++LS L + QY R 
Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGEMIDQRKILSRLAELQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+  +DVA RV +F ++IE +S F PLTG  +  V    IY
Sbjct: 188 DQAFQRATFRVRGEVIDIFPAESDDVALRVELFDDEIENLSLFDPLTGHNLGRVPRYTIY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 248 PKTHYVTPRDRILEAIEQIKKELAERRTYFIKENKLLEEQRIAQRTQFDIEMMNELGYCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GM+RGD  RK TL +Y
Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPSDGLLIIDESHVTVPQIGGMFRGDRARKETLVQY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+   +I +Q++RPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLRFEEFERLSPQTIYVSATPGPYELEKNPDVI-DQVVRPTGLLDPIIE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS++ T+E
Sbjct: 427 VRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 487 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D      
Sbjct: 547 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIVPQALNKKVGELLDIGQTDK 606

Query: 738 LEDAATTNISIDAQQLSL--SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            + +  +  S D Q      S+K+ +  LK L +QM   A +L FE+AA +RD+I +LK+
Sbjct: 607 PKRSKKSAKSSDDQTAYTPKSRKELEKELKVLEQQMRDFAKDLEFEKAAAVRDKIHQLKA 666


>gi|330951646|gb|EGH51906.1| excinuclease ABC subunit B [Pseudomonas syringae Cit 7]
          Length = 671

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/665 (56%), Positives = 486/665 (73%), Gaps = 14/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +V+A
Sbjct: 4   FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+I+P+  +  A RV +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLIEAMEGIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G IVEQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDPQIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  EI+       R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ T+E
Sbjct: 423 IRPALTQVDDLLSEIHKRTALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           N+N + ILYAD IT S++ AI ET RRREKQL  N +H I P+ V + + ++++      
Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRREKQLAFNLEHGITPKGVFKDVADIMEGATVPG 602

Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                   +  AA  N   + +  S S+   +  ++ L ++M+  A +L FE AA++RDE
Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660

Query: 790 IKRLK 794
           I +L+
Sbjct: 661 IGKLR 665


>gi|148358232|ref|YP_001249439.1| excinuclease ABC subunit B [Legionella pneumophila str. Corby]
 gi|296105585|ref|YP_003617285.1| excinuclease ABC subunit B [Legionella pneumophila 2300/99 Alcoy]
 gi|189037981|sp|A5I9P3|UVRB_LEGPC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|148280005|gb|ABQ54093.1| excinuclease ABC subunit B [Legionella pneumophila str. Corby]
 gi|295647486|gb|ADG23333.1| excinuclease ABC subunit B [Legionella pneumophila 2300/99 Alcoy]
          Length = 663

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/655 (56%), Positives = 479/655 (73%), Gaps = 1/655 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ ++Y P+GDQP AIA L+ G+ S    Q LLGVTGSGKTFT+A VI+AM+RP ++M
Sbjct: 4   LFKIYSNYQPAGDQPTAIASLIDGLESGLAKQTLLGVTGSGKTFTIAHVIQAMKRPTLIM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR
Sbjct: 64  APNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+V++VS IYG+G  +SY +M++ L  G+  +Q+++L  L + QY R
Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMLLHLSRGEQSDQRKILKRLAEMQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++ + RG FRV GD I+IFP+  E  A R+ +F ++++ I+ F PLTG+ ++ +  + I
Sbjct: 184 TNLSLERGQFRVHGDVIDIFPADSEKEAIRIELFDDEVDNIARFDPLTGEILQRLPRVTI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  +HYVTPR  +   ++ +K EL+ RL EL  + +L+EAQRLEQR  +D+EM+   G C
Sbjct: 244 FPKTHYVTPRERILETVEKVKAELQERLAELNAQNKLVEAQRLEQRTCFDIEMMLELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+ R  GE PPTLF+Y+P D+LL +DESHVT+PQI GMYRGD  RK TL  
Sbjct: 304 SGIENYSRYLSNREAGEAPPTLFDYLPPDALLIIDESHVTVPQIGGMYRGDRARKETLVN 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+    P TI +SATPG +E E     + EQ++RPTGL+DP V
Sbjct: 364 YGFRLPSALDNRPLRFEEFEERSPQTIYISATPGPYEQEHSDN-VAEQVVRPTGLIDPEV 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR  +TQV+D+  EI     QG RIL+T LTKRMAEDLTEYL E  I+VRY+HS+V T+
Sbjct: 423 EIRPVKTQVDDLMSEIRQVIAQGSRILVTTLTKRMAEDLTEYLSEHGIKVRYLHSDVDTV 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 483 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  + ILYADT+T S+Q A+ ET RRREKQ   N KH I P+ + + + ++++   + 
Sbjct: 543 RNVKGRAILYADTMTGSMQRALMETERRREKQKAFNLKHGITPKGINKSVEDILEGAYIG 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              T       +    S ++    + +L KQM+  A N+ FE AA+IRDE   LK
Sbjct: 603 KRKTMVAEQAPRYTHWSPQELAKQINALEKQMYAHAQNMEFELAAKIRDEYLLLK 657


>gi|330968328|gb|EGH68588.1| excinuclease ABC subunit B [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 671

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/665 (55%), Positives = 487/665 (73%), Gaps = 14/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +V+A
Sbjct: 4   FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVLHVDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+I+P+  +  A R+ +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLVEAMEGIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G IVEQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDPQIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  EI+  A    R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ T+E
Sbjct: 423 IRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           N+N + ILYAD IT S++ AI ET RRR+KQ+  N +H I P+ V + + ++++      
Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRRDKQIAFNLEHGITPKGVFKDVADIMEGATVPG 602

Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                   +  AA  N   + +  S S+   +  ++ L ++M+  A +L FE AA++RDE
Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660

Query: 790 IKRLK 794
           I +L+
Sbjct: 661 IGKLR 665


>gi|226951486|ref|ZP_03821950.1| excinuclease ABC subunit B (ATP-dependent DNA excision repair
           enzyme UvrAC) [Acinetobacter sp. ATCC 27244]
 gi|226837779|gb|EEH70162.1| excinuclease ABC subunit B (ATP-dependent DNA excision repair
           enzyme UvrAC) [Acinetobacter sp. ATCC 27244]
          Length = 680

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/664 (56%), Positives = 482/664 (72%), Gaps = 10/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ T+Y P+GDQP AI +L+ GI    + QLLLGVTGSGKT+TMA VI   QRP IVMA
Sbjct: 13  FELVTNYQPAGDQPQAIEKLVNGIEHGFRNQLLLGVTGSGKTYTMANVIAKTQRPTIVMA 72

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR 
Sbjct: 73  HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAINDHIDQMRL 132

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V + +++  LV+ QY R 
Sbjct: 133 SATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHIVQGDRVSRDDIIRRLVEMQYTRN 192

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++  +RGT+R+ G+ I+IFP+  +  A RV +F ++++ I  F PLTG+ +R V  + IY
Sbjct: 193 ELEFLRGTYRIRGEIIDIFPAESDQDAIRVELFDDEVDSIRWFDPLTGKLVRKVPRVTIY 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  L  A+  IK+ELK +L   +   +LLEAQR+EQR  YDLEM++  G   
Sbjct: 253 PKSHYVTPKDHLTRAIDTIKDELKDQLKFFKDNDKLLEAQRIEQRTRYDLEMMQQLGYTN 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GE PPTLF+Y+PED+LL +DESHVT+PQI  MY+GD  RK  L  Y
Sbjct: 313 GIENYSRHLSGRTAGEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEEW  + PTT+ VSATP  +ELE+ +  +VEQ++RPTGL+DP +E
Sbjct: 373 GFRLPSALDNRPMKFEEWERIVPTTVFVSATPALYELEKSEQ-VVEQVVRPTGLIDPEIE 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EIN+  Q   R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T+E
Sbjct: 432 VRPVLTQVDDVLSEINIRRQLHERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G  DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 492 RVKIIHELRTGVHDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--ILL 738
           NV  K ILYAD IT S++ AIDET RRR KQ+E N+ H I P+S   + ++ ID   +L 
Sbjct: 552 NVKGKAILYADRITDSMRKAIDETDRRRNKQIEFNELHGITPRSAVRQTIKEIDTGEVLS 611

Query: 739 EDAATTN-------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           +D    N       IS D Q L    K    H+  L K+M  A+  L FE+AAR+RDEI 
Sbjct: 612 DDEIDENALQQAQSISADEQHLLSDPKLFAKHIGKLEKEMLKASKELQFEQAARLRDEIV 671

Query: 792 RLKS 795
           RLK+
Sbjct: 672 RLKA 675


>gi|91775673|ref|YP_545429.1| excinuclease ABC subunit B [Methylobacillus flagellatus KT]
 gi|91709660|gb|ABE49588.1| Excinuclease ABC subunit B [Methylobacillus flagellatus KT]
          Length = 679

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/661 (55%), Positives = 487/661 (73%), Gaps = 4/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++   + P+GDQPAAI  L  G++   K Q LLGVTGSGKT+TMA VI    RPAIVMA
Sbjct: 10  YKLFQPFPPAGDQPAAIEALTAGVNEGLKFQTLLGVTGSGKTYTMANVIARTGRPAIVMA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSIN+ I++MR 
Sbjct: 70  PNKTLAAQLYSEFKEFFPQNAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINDHIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYGIG    Y  M++ + +G  + Q+++++ L+  QY+R 
Sbjct: 130 SATKALLEREDSIIVATVSAIYGIGDPGEYHGMVLHIHLGMKISQRDIVNKLIAMQYERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD +++FPS   + A R+S+F ++IE I+ F PLTGQ    +   +I+
Sbjct: 190 DFDFSRGTFRVRGDVLDVFPSENSETAVRISLFDDEIENITLFDPLTGQIFNKIHNFRIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVT R     AM+ IK+EL+ R+    K G+L+EAQR+EQR  +DLEML   G C+
Sbjct: 250 PSSHYVTAREATIRAMETIKQELRERVDFYIKTGKLVEAQRIEQRTRFDLEMLNEIGFCK 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PG+ PPTL +Y+P+++L+ +DESHVT+PQI GMY+GD  RK  L +Y
Sbjct: 310 GIENYSRHLTGRQPGDAPPTLIDYLPKNALMIIDESHVTVPQIGGMYKGDRARKENLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+FEE+  + P  I VSATP  +E    Q  IVEQ++RPTGL+DP + 
Sbjct: 370 GFRLPSAMDNRPLKFEEFERIIPQCIFVSATPAEYEATHQQR-IVEQVVRPTGLIDPEII 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ A TQV+D+  EI L  + G R+L T LTKRMAEDLT+YL E  +RVRY+HS++ T+E
Sbjct: 429 VKPADTQVDDLLSEIKLRVEAGERVLATTLTKRMAEDLTDYLSEHGVRVRYLHSDIDTVE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQT GRAAR
Sbjct: 489 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTAGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N KVI YA+ +T+S++LA+DET RRR KQ+  N +H I P+ V ++I ++I+ +  ++
Sbjct: 549 NLNGKVIFYANKVTRSMKLAMDETQRRRAKQMAFNAEHGITPKGVNKRIKDIIEGVYSKE 608

Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
               +  +  ++ S   +++K+    +K L K MH +A NL FE+AA  RD++++LK++ 
Sbjct: 609 DHQRDRKVAEERASYAQMTEKQLVKEMKRLEKAMHESAKNLEFEKAAEYRDQLRKLKNNF 668

Query: 798 Y 798
           Y
Sbjct: 669 Y 669


>gi|211909246|gb|ACJ12896.1| UvrB [Vibrio natriegens]
          Length = 676

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/669 (55%), Positives = 490/669 (73%), Gaps = 17/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + Y PSGDQP AI QLL G+ S    Q LLGVTGSGKTFT+A VI   QRPAI++A
Sbjct: 5   YELVSSYQPSGDQPDAIKQLLDGLDSGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  ESY QM++ L+ GD ++Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF ++++ IS F PLTG  K R++    I
Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRYTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R  +L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRDRVLEAIENIKVELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G I +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELEKSDGDIADQVVRPTGLLDPIL 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRAVKDERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K ILYAD+ITKS++ A+DET RRREKQ  +N++  I PQ++   I ++++   L 
Sbjct: 545 RNIEGKAILYADSITKSMKKAMDETNRRREKQQAYNEEMGIVPQALTRNIKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D   +      +Q+ LSK             ++ +  +  L   M+  A +L FE AA  
Sbjct: 602 DITKSKRQRTGKQVPLSKVAEPSQSYEVMSPQQLEKEISRLEAAMYQHAQDLEFELAAEK 661

Query: 787 RDEIKRLKS 795
           RDEI++L++
Sbjct: 662 RDEIEKLRA 670


>gi|254362088|ref|ZP_04978211.1| excinuclease ABC subunit B [Mannheimia haemolytica PHL213]
 gi|153093646|gb|EDN74607.1| excinuclease ABC subunit B [Mannheimia haemolytica PHL213]
          Length = 672

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/661 (56%), Positives = 486/661 (73%), Gaps = 7/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + RPA+V+A
Sbjct: 8   FILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAKLNRPAMVLA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR 
Sbjct: 68  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQIEQMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  + Q+E+LS L + QY R 
Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAMIGQREILSRLAELQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV GD I+I+P+  ++VA RV +F ++IE +S F PLTG  +  V    IY
Sbjct: 188 DQAFQRSTFRVRGDVIDIYPAESDEVALRVELFDDEIENLSLFDPLTGHSLGKVPRYTIY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 248 PKTHYVTPRERILEAIEQIKVELADRRTYFIKENKLLEEQRIAQRTQFDIEMMNELGYCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GE PPTLF+Y+P D +L +DESHVT+PQI GMYRGD  RK TL +Y
Sbjct: 308 GIENYSRYLSGRKEGEAPPTLFDYMPADGILVIDESHVTVPQIGGMYRGDRARKETLVQY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLRFEEFERLSPQTIYVSATPGAYELEKNPD-VVDQVVRPTGLLDPIIE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS++ T+E
Sbjct: 427 VRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 487 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           N+N K ILY D IT S+Q AI ET RRREKQ+++N++H I PQ++ +K+ E++D      
Sbjct: 547 NLNGKAILYGDRITNSMQKAITETERRREKQMKYNEEHGITPQALNKKVGELLDIGQSDK 606

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           P   + A     +        S+K+ +  LK+L +QM   A +L FE+AA +RD+++ LK
Sbjct: 607 PKRGKQAVKKAENSATDYKPKSRKELEKELKTLEQQMRDFAKDLEFEKAAAVRDKLQHLK 666

Query: 795 S 795
           +
Sbjct: 667 A 667


>gi|254523426|ref|ZP_05135481.1| excinuclease ABC, B subunit [Stenotrophomonas sp. SKA14]
 gi|219721017|gb|EED39542.1| excinuclease ABC, B subunit [Stenotrophomonas sp. SKA14]
          Length = 674

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/667 (56%), Positives = 484/667 (72%), Gaps = 11/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIA+L     +    Q LLGVTGSGKT+T+A VI+ +Q+P ++MA
Sbjct: 5   FELVSPYSPAGDQPDAIAKLTSNFEAGIAKQTLLGVTGSGKTYTIANVIQNVQKPTLIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++LL R D IVV++VS IYG+G+ E Y  + + L  G+ ++Q++L++ L + QY R 
Sbjct: 125 AATKTLLSRPDAIVVATVSAIYGLGAPEDYLSLRLILSKGERIDQRDLINHLTQLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RGTFRV G+ I++FP+  +  A R+ +F  ++E+I+ F PLTG+ +RN++   +Y
Sbjct: 185 EYELQRGTFRVRGEVIDVFPAESDSEALRLELFDGEVEKITLFDPLTGETLRNMQRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R  +  A+  IK ELK RL +L  E +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERVLAAVDTIKVELKERLEQLYAENKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+N GEPPPTLF+Y+P D+LL +DESHVTIPQI  M++GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKNAGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P  I VSATPG +E  +    I E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEERCPRAIYVSATPGPYEYREAGDEITELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E N   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS+V T+E
Sbjct: 425 IRPVGTQVDDLMSEANERIKAGDRVLVTTLTKRMAENLTEYLTEHGIRVRYLHSDVDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  K ILYAD IT+S+Q AIDET RRR KQ+E+N++H I P+SV   I++V++    + 
Sbjct: 545 NVRGKAILYADKITRSMQAAIDETDRRRAKQVEYNEEHGIVPRSVARPIVDVLEGARSDA 604

Query: 741 AATTNISI-----------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           A                   A   SLS  +    LK+L +QM+  A +L FE+AAR+RD+
Sbjct: 605 AEKEAKKGKGKSRAGVAEEGADYRSLSPAQLATRLKALEQQMYQHAKDLEFEDAARVRDQ 664

Query: 790 IKRLKSS 796
           I++LK +
Sbjct: 665 IRQLKEA 671


>gi|326796004|ref|YP_004313824.1| UvrABC system protein B [Marinomonas mediterranea MMB-1]
 gi|326546768|gb|ADZ91988.1| UvrABC system protein B [Marinomonas mediterranea MMB-1]
          Length = 676

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/665 (56%), Positives = 483/665 (72%), Gaps = 13/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIA+L +GI +    Q LLGVTGSGKTFT+A VI   +RP I+MA
Sbjct: 5   FEVVSAYQPAGDQPTAIAKLTQGIEAGLAHQTLLGVTGSGKTFTVANVIANAKRPTIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYV  +DT+IEK++S+NE I++MR 
Sbjct: 65  HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G  +SY +M++ L  GD ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLEREDVIIVATVSAIYGLGDPQSYLKMMLHLDRGDRIDQRAVLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD I++FP+  ED A+R+ +F ++++ +S   PLT + IR V  I IY
Sbjct: 185 DLVFERGNFRVRGDVIDVFPADSEDTAFRIELFDDEVDNLSIIDPLTNKTIRKVPRITIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR T+  A++ IK EL  RL +L+   +L+E QRLEQR  YDLEM++  G C 
Sbjct: 245 PKTHYVTPRETIVDAIERIKTELDQRLEQLKSLNKLVELQRLEQRTNYDLEMMQELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P ++LL +DESHVT+PQ+  MY+GD  RK  L EY
Sbjct: 305 GIENYSRYLSGRPEGSPPPTLFDYLPANALLVIDESHVTVPQVGAMYKGDRSRKENLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEEW  ++P TI VSATPG +E E  Q  +VEQI+RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPMRFEEWESIKPQTIFVSATPGKYEAEH-QDWVVEQIVRPTGLIDPEVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EINL    G RIL+T LTKRMAEDLT+YLYE  IRVRY+HS++ T+E
Sbjct: 424 IRPVATQVDDLLSEINLRLPTGERILVTTLTKRMAEDLTDYLYEHGIRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 484 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILYAD IT S+  AI+ET RRR KQ   N++H I P+ + + + ++++      
Sbjct: 544 NVNGKAILYADRITGSMGRAIEETDRRRVKQQAFNEEHGIVPKGITKSVEDIMEGAYNPG 603

Query: 741 AA---------TTNISIDAQQLSLS--KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           A              S D Q  S+    +  KA +K L+K M  A++NL FE AA  RD+
Sbjct: 604 AGKGRGKQTRKVAEASKDYQVESMDDVAEVRKAIIK-LQKDMMEASENLQFELAAGYRDQ 662

Query: 790 IKRLK 794
           I+ L+
Sbjct: 663 IRVLQ 667


>gi|323493131|ref|ZP_08098262.1| excinuclease ABC subunit B [Vibrio brasiliensis LMG 20546]
 gi|323312602|gb|EGA65735.1| excinuclease ABC subunit B [Vibrio brasiliensis LMG 20546]
          Length = 676

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/668 (55%), Positives = 488/668 (73%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +DY PSGDQP AI+QLL G+ S    Q LLGVTGSGKTFT+A VI   QRPAI++A
Sbjct: 5   FDLVSDYQPSGDQPTAISQLLDGLDSGLAHQTLLGVTGSGKTFTLANVIATAQRPAILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  ESY +M++ ++ GD ++Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLKMMLHIRRGDVMDQRDILRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A R+ MF ++I+ IS F PLTG  K R++    I
Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEIDCISVFDPLTGAVKQRDLARYTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL+ R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILDAIEEIKVELEGRKKYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GRN GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRNEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATPG++ELE+  G + +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFESLAPQTIFVSATPGNYELEKSDGEVADQVVRPTGLLDPQL 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI L + +  R+L+T LTKRMAEDLTEYL E +++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRLRSAKDERVLVTTLTKRMAEDLTEYLTEHDVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+ K ILYAD ITKS++ A+ ET RRREKQ ++N+K  I PQ++K  + ++++   L 
Sbjct: 545 RNVSGKAILYADRITKSMEKAMGETNRRREKQQQYNEKMGIEPQALKRNVKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D   +     ++ + LSK             ++    +  L  QM+  A +L FE AA  
Sbjct: 602 DITKSKKQRTSKAVPLSKVAEPSQSYDVMTPQQLDKEIAKLEAQMYQHAQDLEFELAAEK 661

Query: 787 RDEIKRLK 794
           RD+I +L+
Sbjct: 662 RDQIDQLR 669


>gi|319779606|ref|YP_004130519.1| Excinuclease ABC subunit B [Taylorella equigenitalis MCE9]
 gi|317109630|gb|ADU92376.1| Excinuclease ABC subunit B [Taylorella equigenitalis MCE9]
          Length = 670

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/654 (56%), Positives = 479/654 (73%), Gaps = 1/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   + PSGDQP+AI  L++G+      Q L+GVTGSGKTFTMA VI  + RPA+++A
Sbjct: 12  FLLYQSWEPSGDQPSAIKSLVEGVQDGLMNQTLIGVTGSGKTFTMANVIAQLGRPALILA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+IN+ I++MR 
Sbjct: 72  HNKTLAAQLYAEMREFFPKNAVEYFVSYYDYYQPEAYVPSRDLFIEKDSNINDHIEQMRL 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER D I+V +VS IYGIG    Y  M++ L+ GD + ++ +L  LV  QY+R 
Sbjct: 132 SATKSLLERRDTIIVGTVSTIYGIGDASDYQAMVLILRTGDKISRESILERLVSMQYERN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD I+IFPS   ++A RV++F +++E++  F PLTG+  +++    +Y
Sbjct: 192 DMEFARGHFRVRGDIIDIFPSESPELALRVTLFDDELEKLELFDPLTGRIRQDIIRFTLY 251

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +S YVTPR T+  A++ IKEELK R+ E    G L+ AQR+EQR  +DLEML   G C+
Sbjct: 252 PSSLYVTPRSTVLRAIETIKEELKQRVKEFLDRGELVYAQRIEQRTRFDLEMLHELGFCK 311

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G  PG+PPPTL +Y+P+D+L+F DESHV + Q+ GMYRGD  RKATL ++
Sbjct: 312 GIENYSRHLSGAKPGDPPPTLIDYLPKDALMFFDESHVMMGQLRGMYRGDHSRKATLVQF 371

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+      +I VSATP  +ELE+    IVEQ++RPTGLVDP VE
Sbjct: 372 GFRLPSALDNRPLKMEEFEARMKQSIFVSATPAEYELERSDN-IVEQVVRPTGLVDPTVE 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  E  L   +G R+L+T LTKRMAEDLTEYL E  +RVRY+HS++ T+E
Sbjct: 431 IRPALTQVDDLLGEAKLRIAKGERVLVTTLTKRMAEDLTEYLSENFLRVRYLHSDIDTVE 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 491 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N   ILYAD IT S++ AIDET RR EKQ+ +NK H I P++VK+ + ++ID +L + 
Sbjct: 551 NINGSAILYADKITDSMKKAIDETERRHEKQMAYNKAHGITPKTVKKAVKDIIDGVLHDS 610

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 +ID   L   +K+  + +K L KQM   A NL FEEAA+ RD++ +LK
Sbjct: 611 LEDMQETIDMSDLLKDEKRLSSEIKKLEKQMLEHAKNLEFEEAAKARDQLSKLK 664


>gi|307944241|ref|ZP_07659582.1| UvrABC system protein B [Roseibium sp. TrichSKD4]
 gi|307772587|gb|EFO31807.1| UvrABC system protein B [Roseibium sp. TrichSKD4]
          Length = 713

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/508 (67%), Positives = 416/508 (81%), Gaps = 1/508 (0%)

Query: 97  QTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAA 156
           Q  T +V+AL+ LI+S NPL KNG++W PHR          +   ++ +DY P GDQP A
Sbjct: 193 QGATATVEALSALIESGNPLHKNGELWVPHRPERPEKSEGGVPI-KLASDYEPKGDQPTA 251

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           IA L++GI + ++ Q+LLGVTGSGKT+TMA+VI   QRPA+++APNK LAAQLY EFK+F
Sbjct: 252 IADLVEGIDNGDQTQVLLGVTGSGKTYTMAQVISRTQRPALILAPNKTLAAQLYGEFKSF 311

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           FP NAVEYFVSYYDYYQPEAYVPRTDTYIEKESS+NEQIDRMRHSATR+LLER+D I+V+
Sbjct: 312 FPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSVNEQIDRMRHSATRALLERDDVIIVA 371

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           SVSCIYGIGSVE+Y+ M   +++G+ ++Q++L++ LV  QYKR D    RGTFRV GD+I
Sbjct: 372 SVSCIYGIGSVETYTAMTFAIEVGERIDQRQLIADLVALQYKRNDAAFQRGTFRVRGDTI 431

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           E+FP+H ED AWRVS+FG++IE I+EF PLTG+K   ++++KIYANSHYVTP+PTLN A 
Sbjct: 432 ELFPAHYEDRAWRVSLFGDEIESITEFDPLTGKKSGELKSVKIYANSHYVTPKPTLNQAT 491

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           K IK ELK RL EL   GRLLEAQRLEQR  +DLEMLE TGSC  IENYSRYLTGRNPGE
Sbjct: 492 KSIKAELKHRLEELNAHGRLLEAQRLEQRTIFDLEMLEATGSCAGIENYSRYLTGRNPGE 551

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
           PPPTLFEY+P+++L+F DESHVTIPQI  MYRGDF RKATLAEYGFRLPSCMDNRPLRFE
Sbjct: 552 PPPTLFEYLPDNALVFADESHVTIPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFE 611

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           EWN +RP +I VSATPGSWE+EQ  G+  EQ+IRPTGL+DPPV+IR A +QV+D+  E+ 
Sbjct: 612 EWNAMRPQSIAVSATPGSWEMEQSGGVFAEQVIRPTGLIDPPVDIRPAGSQVDDLLGEVR 671

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYE 604
             A +G R L+T LTKRMAEDLTEYL+E
Sbjct: 672 ETAAKGYRTLVTTLTKRMAEDLTEYLHE 699


>gi|332759678|gb|EGJ89981.1| excinuclease ABC, B subunit [Shigella flexneri 4343-70]
 gi|333007118|gb|EGK26610.1| excinuclease ABC, B subunit [Shigella flexneri K-218]
          Length = 673

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/664 (56%), Positives = 479/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D IVV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM++  G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMDELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDL EYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLAEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D  T S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDRSTPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +  K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMLPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|317491235|ref|ZP_07949671.1| excinuclease ABC [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920782|gb|EFV42105.1| excinuclease ABC [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 672

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/665 (56%), Positives = 479/665 (72%), Gaps = 13/665 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ + + P GDQP AI +L  G+ +    Q LLGVTGSGKTFT+A VI  + RP +VM
Sbjct: 4   MFKLHSTFKPDGDQPEAIRRLEAGLENGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SS+NE I++MR
Sbjct: 64  APNKTLAAQLYGEMKQFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSVNEHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER D IVV+SVS IYG+G  ++Y +M++ L  G  ++Q+ +L  L + QY R
Sbjct: 124 LSATKALLERKDVIVVASVSAIYGLGDPDAYLKMMLHLTRGMIIDQRAILRRLSELQYAR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RGTFRV G+ I+IFP+  ED A RV +F  ++E +S F PLTGQ I+ V+   +
Sbjct: 184 NDQAFQRGTFRVRGEVIDIFPAESEDEALRVELFDEEVERLSLFDPLTGQLIQEVQRFTV 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  AM+ IK +L  R   L    +LLE QRL QR  +DLEM+   G C
Sbjct: 244 YPKTHYVTPRERILQAMEEIKVDLAERRQVLLANNKLLEEQRLTQRTQFDLEMMNELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR PGE PPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK TL E
Sbjct: 304 SGIENYSRYLSGRKPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP+RFEE+  L P TI VSATPG++ELE+  G IV+Q++RPTGL+DP +
Sbjct: 364 YGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGNYELEKSGGDIVDQVVRPTGLLDPLI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI +      R+L+T LTKRMAEDLTEYL E  +RVRY+HS++ T+
Sbjct: 424 EVRPVATQVDDLLSEIRIREAINERVLVTTLTKRMAEDLTEYLDEHGVRVRYLHSDIDTV 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 484 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N K ILY D IT S++ AI ET RRR KQ  +N +H I PQ++ +K+ +++    L 
Sbjct: 544 RNLNGKAILYGDRITNSMEKAIGETERRRAKQQAYNLEHGITPQALNKKVSDILQ---LG 600

Query: 740 DAATTNISIDAQQL----------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           +A++ +     +            +LS K+ +  ++ L  QM+  A NL FEEAA +RD+
Sbjct: 601 EASSRSKGKHGRSSKAAESSAAYQALSPKQIEQRIRDLEAQMYKHAQNLEFEEAASLRDD 660

Query: 790 IKRLK 794
           I+ L+
Sbjct: 661 IQALR 665


>gi|71737418|ref|YP_274169.1| excinuclease ABC subunit B [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|90111045|sp|Q48KA6|UVRB_PSE14 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|71557971|gb|AAZ37182.1| excinuclease ABC, B subunit [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 671

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/665 (55%), Positives = 486/665 (73%), Gaps = 14/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +V+A
Sbjct: 4   FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQVKRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+I+P+  +  A RV +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLIEAMEGIKVELQERLEYLRTQNKLVEAQRLEQRTRFDLEMMLELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G +VEQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDPQIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  EI+       R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ T+E
Sbjct: 423 IRPALTQVDDLLSEIHKRTALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           N+N + ILYAD IT S++ AI ET RRR+KQL  N +H I P+ V + + ++++      
Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRRDKQLAFNHEHGITPKGVFKDVADIMEGATVPG 602

Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                   +  AA  N   + +  S S+   +  ++ L ++M+  A +L FE AA++RDE
Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660

Query: 790 IKRLK 794
           I +L+
Sbjct: 661 IGKLR 665


>gi|134296394|ref|YP_001120129.1| excinuclease ABC subunit B [Burkholderia vietnamiensis G4]
 gi|14572552|gb|AAK64610.1| excinuclease ABC subunit B [Burkholderia cepacia]
 gi|134139551|gb|ABO55294.1| Excinuclease ABC subunit B [Burkholderia vietnamiensis G4]
          Length = 697

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/680 (54%), Positives = 491/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y P+GDQP AI  L++G+H     Q LLGVTGSGKTFTMA  
Sbjct: 13  DESKFVTFEGSPFQLYQPYPPAGDQPTAIETLVEGVHDGLSFQTLLGVTGSGKTFTMANT 72

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 73  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQRDV 192

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 193 IARLIAMQYSRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK+EL+ RL    +EG+L+EAQRLEQR  +
Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRDTVMRAIETIKDELRERLEFFHREGKLVEAQRLEQRTRF 312

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ+
Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVTGQIAEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A +QV+DV  EIN     G R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLTEINARVSAGERVLITVLTKRMAEQLTEFLADHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYAD +T+S++ AI ET RRR KQ+ HN+K  I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGKAILYADNMTESMKRAIGETERRRAKQIAHNEKMGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
             RD++  L+   +   + D
Sbjct: 671 ATRDQLALLRERVFGANVGD 690


>gi|320324863|gb|EFW80935.1| excinuclease ABC subunit B [Pseudomonas syringae pv. glycinea str.
           B076]
          Length = 671

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/665 (55%), Positives = 486/665 (73%), Gaps = 14/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +V+A
Sbjct: 4   FQLVTRFEPAGDQPEAIRQLVEGIDTGLAHQTLLGVTGSGKTFSIANVISQVKRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+I+P+  +  A RV +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLIEAMEGIKVELQERLEYLRTQNKLVEAQRLEQRTRFDLEMMLELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G +VEQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDPQIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  EI+       R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ T+E
Sbjct: 423 IRPALTQVDDLLSEIHKRTALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           N+N + ILYAD IT S++ AI ET RRR+KQL  N +H I P+ V + + ++++      
Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRRDKQLAFNLEHGITPKGVFKDVADIMEGATVPG 602

Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                   +  AA  N   + +  S S+   +  ++ L ++M+  A +L FE AA++RDE
Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660

Query: 790 IKRLK 794
           I +L+
Sbjct: 661 IGKLR 665


>gi|52840327|ref|YP_094126.1| excinuclease ABC subunit B [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|81823491|sp|Q5ZZD9|UVRB_LEGPH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|52627438|gb|AAU26179.1| excinuclease ABC subunit B [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 663

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/655 (56%), Positives = 479/655 (73%), Gaps = 1/655 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ ++Y P+GDQP AIA L+ G+ S    Q LLGVTGSGKTFT+A VI+AM+RP ++M
Sbjct: 4   LFKIYSNYQPAGDQPTAIASLIDGLESGLAKQTLLGVTGSGKTFTIAHVIQAMKRPTLIM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR
Sbjct: 64  APNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+V++VS IYG+G  +SY +M++ L  G+  +Q+++L  L + QY R
Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMLLHLSRGEQSDQRKILKRLAEMQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++ + RG FRV GD I+IFP+  E  A R+ +F ++++ I+ F PLTG+ ++ +  + I
Sbjct: 184 TNLSLERGQFRVHGDVIDIFPADSEKEAIRIELFDDEVDNIARFDPLTGEILQRLPRVTI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  +HYVTPR  +   ++ +K EL+ RL EL  + +L+EAQRLEQR  +D+EM+   G C
Sbjct: 244 FPKTHYVTPRERILETVEKVKVELQERLAELNAQNKLVEAQRLEQRTCFDIEMMLELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+ R  GE PPTLF+Y+P ++LL +DESHVT+PQI GMYRGD  RK TL  
Sbjct: 304 SGIENYSRYLSNREAGEAPPTLFDYLPPEALLIIDESHVTVPQIGGMYRGDRARKETLVN 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+    P TI +SATPG +E E     + EQ++RPTGL+DP V
Sbjct: 364 YGFRLPSALDNRPLRFEEFEERSPQTIYISATPGPYEQEHSDN-VAEQVVRPTGLIDPEV 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR  +TQV+D+  EI     QG RIL+T LTKRMAEDLTEYL E  I+VRY+HS+V T+
Sbjct: 423 EIRPVKTQVDDLMSEIRQVIAQGSRILVTTLTKRMAEDLTEYLSEHGIKVRYLHSDVDTV 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 483 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  + ILYADTIT S+Q A+ ET RRREKQ   N +H I P+ + + + ++++   + 
Sbjct: 543 RNVKGRAILYADTITGSMQRALTETERRREKQKAFNLEHGITPKGINKSVEDILEGAYIG 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              T       Q    S ++    + +L KQM+  A N+ FE AA+IRDE   LK
Sbjct: 603 KRKTVVAEKSPQYTHWSPQELVKQINALEKQMYSHAQNMEFELAAKIRDEYLLLK 657


>gi|260551513|ref|ZP_05825697.1| excinuclease ABC subunit B [Acinetobacter sp. RUH2624]
 gi|260405507|gb|EEW99000.1| excinuclease ABC subunit B [Acinetobacter sp. RUH2624]
          Length = 673

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/666 (56%), Positives = 483/666 (72%), Gaps = 14/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T Y P+GDQP AI +L+ G+    + QLLLGVTGSGKT+TMA VI   QRP IVMA
Sbjct: 7   FDLVTHYQPAGDQPQAIEKLVNGVEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR 
Sbjct: 67  HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V + E++  LV+ QY R 
Sbjct: 127 SATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVQGDRVSRDEIIRRLVEMQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++  +RGT+R+ G+ I+IFP+  +  A R+ +F ++++ I  F PLTG+ +R V  + IY
Sbjct: 187 ELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVPRVTIY 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  L  A+  IK+EL+ +L    +  +LLEAQR+EQR  YDLEM++  G   
Sbjct: 247 PKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTN 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GE PPTLF+Y+P+D+LL +DESHVT+PQI  MY+GD  RK  L  Y
Sbjct: 307 GIENYSRHLSGRPAGEAPPTLFDYVPDDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEEW  + PTTI VSATP  +ELE+ +  +VEQ++RPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPMKFEEWERIVPTTIFVSATPAKYELEKSEQ-VVEQVVRPTGLIDPEIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EIN+      R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T+E
Sbjct: 426 VRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 486 RVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS-VKEKIMEV------- 732
           NV  K ILYAD IT S+Q AIDET RRR KQ+E N+ H I P+S V++ + E+       
Sbjct: 546 NVKGKAILYADRITDSMQKAIDETERRRAKQIEFNELHGITPRSAVRQAVKEIDTGEVLS 605

Query: 733 ---IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
              ID  +LE A    +S D + +    K    H+  L K+M  A+ +L FE+AARIRDE
Sbjct: 606 DDQIDEKILEQAQA--LSADDRHILSDPKLFSKHITKLEKEMLKASKDLQFEQAARIRDE 663

Query: 790 IKRLKS 795
           I RLK+
Sbjct: 664 IVRLKA 669


>gi|207725269|ref|YP_002255665.1| uvrABC system protein B [Ralstonia solanacearum MolK2]
 gi|300704659|ref|YP_003746262.1| ATP-dependent DNA excision repair enzyme, DNA damage recognition
           component [Ralstonia solanacearum CFBP2957]
 gi|206590503|emb|CAQ37465.1| uvrabc system protein b (uvrb protein) (excinuclease abc subunit b)
           [Ralstonia solanacearum MolK2]
 gi|299072323|emb|CBJ43657.1| ATP-dependent DNA excision repair enzyme, DNA damage recognition
           component [Ralstonia solanacearum CFBP2957]
          Length = 696

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/674 (55%), Positives = 488/674 (72%), Gaps = 9/674 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK + F    FQ+   Y P+GDQP AI QLL+GI      Q LLGVTGSGKT+TMA V
Sbjct: 12  DESKFVAFEGSPFQLYQPYPPAGDQPGAIRQLLEGIGDGLSYQTLLGVTGSGKTYTMANV 71

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I    RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 72  IAQAGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+NE I++MR SAT+SLLER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 132 SSVNEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPTEYHQMILTLRTGDRISQRDV 191

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A R+ +F ++++ +  F PLTG
Sbjct: 192 IARLIAMQYTRNETDFQRGTFRVRGDTIDIFPAEHAEMAVRLELFDDEVDSLQLFDPLTG 251

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A+  IK EL+ RL    KE +L+EAQRLEQR  +
Sbjct: 252 RVRQKIPRFTVYPSSHYVTPRETVLRAIGAIKAELRERLDFFYKENKLVEAQRLEQRTRF 311

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHV I Q +GMY 
Sbjct: 312 DLEMLQELGFCKGIENYSRHLSGAQPGEPPPTLVDYLPPDALMFLDESHVLIGQFNGMYN 371

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL+EYGFRLPS +DNRPL+F E+       + VSATP  +E ++    +VEQ+
Sbjct: 372 GDRARKETLSEYGFRLPSALDNRPLKFAEFEGKMRQVVFVSATPADYEKQRAGDEVVEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP + +R A TQV+D+  EI+   + G R+L+T LTKRMAE LTE+L E  ++
Sbjct: 432 VRPTGLVDPIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQLTEFLSEHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN   ILYAD IT S++ AI ET RRR KQ+ HN+ H I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGTAILYADRITDSMRRAIGETERRRAKQIAHNEAHGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +   AQ+ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNVDDARAELKA-AQEAARYEDMSEKQVGKEIKRLEKQMLDHAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPY 798
            +RD++ +LKS  +
Sbjct: 671 AVRDQLAKLKSQVF 684


>gi|307608818|emb|CBW98210.1| excinuclease ABC subunit B [Legionella pneumophila 130b]
          Length = 663

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/655 (56%), Positives = 478/655 (72%), Gaps = 1/655 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ ++Y P+GDQP AIA L+ G+ S    Q LLGVTGSGKTFT+A VI+AM+RP ++M
Sbjct: 4   LFKIYSNYQPAGDQPTAIASLIDGLESGLAKQTLLGVTGSGKTFTIAHVIQAMKRPTLIM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR
Sbjct: 64  APNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+V++VS IYG+G  +SY +M++ L  G+  +Q+++L  L + QY R
Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMLLHLSRGEQSDQRKILKRLAEMQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++ + RG FRV GD I+IFP+  E  A R+ +F ++++ I+ F PLTG+ ++ +  + I
Sbjct: 184 TNLSLERGQFRVHGDVIDIFPADSEKEAIRIELFDDEVDNIARFDPLTGEILQRLPRVTI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  +HYVTPR  +   ++ +K EL+ RL EL  + +L+EAQRLEQR  +D+EM+   G C
Sbjct: 244 FPKTHYVTPRERILETVEKVKVELQERLAELNAQNKLVEAQRLEQRTCFDIEMMLELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+ R  GE PPTLF+Y+P ++LL +DESHVT+PQI GMYRGD  RK TL  
Sbjct: 304 SGIENYSRYLSNREAGEAPPTLFDYLPPEALLIIDESHVTVPQIGGMYRGDRARKETLVN 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+    P TI +SATPG +E E     + EQ++RPTGL+DP V
Sbjct: 364 YGFRLPSALDNRPLRFEEFEERSPQTIYISATPGPYEQEHSDN-VAEQVVRPTGLIDPEV 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR  +TQV+D+  EI     QG RIL+T LTKRMAEDLTEYL E  I+VRY+HS+V T+
Sbjct: 423 EIRPVKTQVDDLMSEIRQVIAQGSRILVTTLTKRMAEDLTEYLSEHGIKVRYLHSDVDTV 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 483 ERIEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  + ILYAD IT S+Q A+ ET RRREKQ   N KH I P+ + + + ++++   + 
Sbjct: 543 RNVKGRAILYADNITGSMQRALTETERRREKQKAFNLKHGITPKGINKSVEDILEGAYIG 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              T       +    S ++    + +L KQM+  A N+ FE AA+IRDE   LK
Sbjct: 603 KRKTMVAEQAPRYTHWSPQELAKQINALEKQMYAHAQNMEFELAAKIRDEYLLLK 657


>gi|298486485|ref|ZP_07004545.1| Excinuclease ABC subunit B [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158962|gb|EFI00023.1| Excinuclease ABC subunit B [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|320329228|gb|EFW85225.1| excinuclease ABC subunit B [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330888119|gb|EGH20780.1| excinuclease ABC subunit B [Pseudomonas syringae pv. mori str.
           301020]
          Length = 671

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/665 (55%), Positives = 486/665 (73%), Gaps = 14/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +V+A
Sbjct: 4   FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQVKRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+I+P+  +  A RV +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLIEAMEGIKVELQERLEYLRTQNKLVEAQRLEQRTRFDLEMMLELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G +VEQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDPQIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  EI+       R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ T+E
Sbjct: 423 IRPALTQVDDLLSEIHKRTALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           N+N + ILYAD IT S++ AI ET RRR+KQL  N +H I P+ V + + ++++      
Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRRDKQLAFNLEHGITPKGVFKDVADIMEGATVPG 602

Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                   +  AA  N   + +  S S+   +  ++ L ++M+  A +L FE AA++RDE
Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660

Query: 790 IKRLK 794
           I +L+
Sbjct: 661 IGKLR 665


>gi|293609812|ref|ZP_06692114.1| UvrABC system protein B [Acinetobacter sp. SH024]
 gi|292828264|gb|EFF86627.1| UvrABC system protein B [Acinetobacter sp. SH024]
 gi|325123037|gb|ADY82560.1| excinuclease ABC subunit B [Acinetobacter calcoaceticus PHEA-2]
          Length = 673

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/664 (56%), Positives = 481/664 (72%), Gaps = 10/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T Y P+GDQP AI +L+ GI    + QLLLGVTGSGKT+TMA VI   QRP IVMA
Sbjct: 7   FDLVTHYQPAGDQPQAIEKLVNGIEHGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR 
Sbjct: 67  HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V + E++  LV+ QY R 
Sbjct: 127 SATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVEGDRVSRDEIIRRLVEMQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++  +RGT+R+ G+ I+IFP+  +  A R+ +F ++++ I  F PLTG+ +R V  + IY
Sbjct: 187 ELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVPRVTIY 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  L  A+  IK+EL+ +L    +  +LLEAQR+EQR  YDLEM++  G   
Sbjct: 247 PKSHYVTPKDHLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTN 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GE PPTLF+Y+PED+LL +DESHVT+PQI  MY+GD  RK  L  Y
Sbjct: 307 GIENYSRHLSGRPAGEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEEW  + PTTI VSATP  +ELE+    +VEQ++RPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPMKFEEWERIVPTTIFVSATPAKYELEKSDQ-VVEQVVRPTGLIDPEIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EIN+      R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T+E
Sbjct: 426 VRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 486 RVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--ILL 738
           NV  K ILYAD IT S+Q AIDET RRR KQ+E N+ H I P+S   ++++ ID   +L 
Sbjct: 546 NVKGKAILYADRITDSMQKAIDETERRRAKQIEFNELHGITPRSAVRQVIKEIDSGEVLS 605

Query: 739 EDAATTNISIDAQQLSLSK-------KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           +D     +   AQ LS  +       K    H+  L K+M  A+ +L FE+AARIRDEI 
Sbjct: 606 DDEIDEKVLEQAQALSADERHILSDPKLFSKHITKLEKEMLKASKDLQFEQAARIRDEII 665

Query: 792 RLKS 795
           RLK+
Sbjct: 666 RLKA 669


>gi|29653858|ref|NP_819550.1| excinuclease ABC subunit B [Coxiella burnetii RSA 493]
 gi|161829993|ref|YP_001596449.1| excinuclease ABC subunit B [Coxiella burnetii RSA 331]
 gi|212212986|ref|YP_002303921.1| excinuclease ABC subunit B [Coxiella burnetii CbuG_Q212]
 gi|81839094|sp|Q83E18|UVRB_COXBU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189037963|sp|A9NC09|UVRB_COXBR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226698333|sp|B6J1E8|UVRB_COXB2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|29541121|gb|AAO90064.1| excinuclease ABC subunit B [Coxiella burnetii RSA 493]
 gi|161761860|gb|ABX77502.1| excinuclease ABC, B subunit [Coxiella burnetii RSA 331]
 gi|212011396|gb|ACJ18777.1| excinuclease ABC subunit B [Coxiella burnetii CbuG_Q212]
          Length = 672

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/661 (55%), Positives = 488/661 (73%), Gaps = 8/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L+ G+      Q LLGVTGSGKTFT+A  IE +QRP +++ 
Sbjct: 5   FKLTSKFKPSGDQPQAIEKLVAGLEDGLAYQTLLGVTGSGKTFTIANAIEKVQRPTLILE 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ Y+E + FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN+ I++MR 
Sbjct: 65  PNKTLAAQFYAEMREFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++ ER+D I++++VS IYG+G  +SY +M++ L  GD ++Q+++L  L + QY R 
Sbjct: 125 SATKAITERHDTIIIATVSAIYGLGDPDSYLKMLLHLTRGDQIDQRKILQRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + R T+RV GD I+I+P+  E  A RV +F +++E +S F PLTG+ +R V  I +Y
Sbjct: 185 DLELRRATYRVNGDIIDIYPADSEREAVRVELFDDEVENLSYFDPLTGEMLRRVPRITVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  L + +  IK ELK RL +LEK  +L+E QRLEQR  +D+EM+   G C 
Sbjct: 245 PKTHYVTPREKLLSTLDQIKIELKERLSQLEKANKLVERQRLEQRTKFDMEMILELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTL +Y+P+D+LL +DESHVTIPQ+ GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRNEGEPPPTLIDYLPKDALLIIDESHVTIPQLGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+  L P TI +SATPG +E +Q    +VE ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFDEFEKLAPQTIFISATPGPYEEKQSDQ-VVELLVRPTGLIDPEIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A Q  R+L+T LTKRMAEDLTEY  E N+RVRY+HS++ T+E
Sbjct: 424 VRPVATQVDDLLSEIKKRAAQNERVLVTTLTKRMAEDLTEYFTEHNVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736
           NV+ K ILYAD IT S++ A++E  RRR  Q  +N+KH+I P+S+++ + E+I+      
Sbjct: 544 NVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTYT 603

Query: 737 ---LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                 + A      +A+ ++++ K+    L+ L +QM+  A NL FEEAA +RD+I+ +
Sbjct: 604 ERGRFVNQAQLIAEEEAKYIAMTPKQLAKELRKLEEQMYHHARNLEFEEAAAVRDKIQHI 663

Query: 794 K 794
           +
Sbjct: 664 R 664


>gi|194365163|ref|YP_002027773.1| excinuclease ABC subunit B [Stenotrophomonas maltophilia R551-3]
 gi|194347967|gb|ACF51090.1| excinuclease ABC, B subunit [Stenotrophomonas maltophilia R551-3]
          Length = 674

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/667 (55%), Positives = 486/667 (72%), Gaps = 11/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIA+L     +    Q LLGVTGSGKT+T+A VI+ +Q+P ++MA
Sbjct: 5   FELVSPYSPAGDQPDAIAKLTSNFEAGIAKQTLLGVTGSGKTYTIANVIQNVQKPTLIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++LL R D IVV++VS IYG+G+ E Y  + + L  G+ ++Q++L++ L + QY R 
Sbjct: 125 AATKTLLSRPDAIVVATVSAIYGLGAPEDYLSLRLILSKGERIDQRDLINHLTQLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RGTFRV G+ I++FP+  +  A R+ +F  ++E+I+ F PLTG+ +RN+    +Y
Sbjct: 185 EYELQRGTFRVRGEVIDVFPAESDSEALRIELFDGEVEKITLFDPLTGETMRNLMRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R  +  A++ IK ELK RL +L  + +L+EAQRL QR  +D+EM+   G C 
Sbjct: 245 PKTHYATTRERVLAAVETIKVELKERLEQLYAQNKLVEAQRLAQRTQFDIEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+N GEPPPTLF+Y+P D+LL +DESHVTIPQI  M++GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKNAGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +E  +    I E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEERCPRSIYVSATPGPYEYREAGEEITELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E N   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS+V T+E
Sbjct: 425 IRPVGTQVDDLMSEANERIKAGDRVLVTTLTKRMAENLTEYLTEHGIRVRYLHSDVDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  K ILYAD IT+S+Q AIDET RRR KQ+E+N++H I P+SV   I++V++    + 
Sbjct: 545 NVRGKAILYADKITRSMQAAIDETDRRRAKQVEYNEEHGIVPRSVARPIVDVLEGARSDA 604

Query: 741 AATTNISID-----------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           A                   A   SLS  +  A LK+L ++M+  A +L FE+AAR+RD+
Sbjct: 605 AEKEAKKGKGKGRAGVAEEAADYRSLSPAQLAARLKALEQKMYQHAKDLEFEDAARVRDQ 664

Query: 790 IKRLKSS 796
           I++LK +
Sbjct: 665 IRQLKEA 671


>gi|82702490|ref|YP_412056.1| excinuclease ABC subunit B [Nitrosospira multiformis ATCC 25196]
 gi|82410555|gb|ABB74664.1| Excinuclease ABC subunit B [Nitrosospira multiformis ATCC 25196]
          Length = 695

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/665 (54%), Positives = 489/665 (73%), Gaps = 8/665 (1%)

Query: 138 ITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
           ITF    +++   + P+GDQ +AI +L++GI      Q LLGVTGSGKTFTMA VI  + 
Sbjct: 3   ITFPNSPYKLNQLFQPAGDQSSAIEKLVEGIEDGLAFQTLLGVTGSGKTFTMANVIARLG 62

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPAI+MAPNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE
Sbjct: 63  RPAIIMAPNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINE 122

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
            I++MR SAT++LLER+D I+V++VSCIYGIG    Y  MI+ L+  + + Q++ +  L 
Sbjct: 123 HIEQMRLSATKALLERDDAIIVATVSCIYGIGDPVDYHGMILHLREHEKITQRQAIQRLT 182

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
           + QY+R +    RGTFRV GD ++IFP+   + A RVS+F +++E ++ F PLTG+  R 
Sbjct: 183 EMQYERNEFEFSRGTFRVRGDVLDIFPAESSETAVRVSLFDDEVESMTLFDPLTGRTSRK 242

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           V    +Y +SHYVTPR T   A++ IK EL+ R+    +  +L+E QR+EQR  +DLEML
Sbjct: 243 VSRYTVYPSSHYVTPRSTTLRAIETIKTELRERMDFFHQHNKLVELQRIEQRTRFDLEML 302

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
              G C+ IENYSR+L+G+ PGEPPPTL +Y+P  +L+ +DESHVT+PQ+ GMY+GD  R
Sbjct: 303 NELGFCKGIENYSRHLSGKKPGEPPPTLMDYLPPRTLMVIDESHVTVPQVGGMYKGDRAR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K  L +YGFRLPS +DNRPLRF+E+  + P T+ VSATP  +E +   G +VEQ++RPTG
Sbjct: 363 KENLVDYGFRLPSALDNRPLRFDEFRKIMPQTVFVSATPAEFE-KIHSGQVVEQVVRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           LVDP +E+R A TQV+D+  E+ L   +  R+L+T LTKRMAEDLT+Y  +  IRVRY+H
Sbjct: 422 LVDPQIEVRPASTQVDDLMSEVRLRTAKDERVLVTTLTKRMAEDLTDYFADHGIRVRYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ T+ER+EI+RDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQ
Sbjct: 482 SDIDTVERVEIVRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAAR++N   +LYAD IT+S++LA+DET RRR KQ+  N++H I P+SV +++ ++I
Sbjct: 542 TIGRAARHINGTALLYADRITESMRLAMDETERRRNKQILFNQEHGITPRSVHKRVKDLI 601

Query: 734 DPILLEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           D +   + A   +     Q    ++S+ +    +KSL KQMH AA NL FE+AA  RDE+
Sbjct: 602 DGVYSMETAQQQLKAAQTQARYEAMSETQLAKEIKSLEKQMHEAAKNLEFEKAAEYRDEL 661

Query: 791 KRLKS 795
           K+LK+
Sbjct: 662 KKLKN 666


>gi|54296068|ref|YP_122437.1| excinuclease ABC subunit B [Legionella pneumophila str. Paris]
 gi|81822670|sp|Q5X906|UVRB_LEGPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|53749853|emb|CAH11234.1| excinuclease ABC subunit B [Legionella pneumophila str. Paris]
          Length = 663

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/655 (55%), Positives = 479/655 (73%), Gaps = 1/655 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ ++Y P+GDQP AIA L+ G+ S    Q LLGVTGSGKTFT+A VI+AM+RP ++M
Sbjct: 4   LFKIYSNYQPAGDQPTAIASLIDGLESGLAKQTLLGVTGSGKTFTIAHVIQAMKRPTLIM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR
Sbjct: 64  APNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+V++VS IYG+G  +SY +M++ L  G+  +Q+++L  L + QY R
Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMLLHLSRGEQSDQRKILKRLAEMQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++ + RG FRV GD I+IFP+  E  A R+ +F ++++ I+ F PLTG+ ++ +  + I
Sbjct: 184 TNLSLERGQFRVHGDVIDIFPADSEKEAIRIELFDDEVDNIARFDPLTGEILQRLPRVTI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  +HYVTPR  +   ++ +K EL+ RL EL  + +L+EAQRLEQR  +D+EM+   G C
Sbjct: 244 FPKTHYVTPRERILETVEKVKVELQERLAELNAQNKLVEAQRLEQRTCFDIEMMLELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+ R  GE PPTLF+Y+P ++LL +DESHVT+PQI GMYRGD  RK TL  
Sbjct: 304 SGIENYSRYLSNREAGEAPPTLFDYLPPEALLIIDESHVTVPQIGGMYRGDRARKETLVN 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+    P TI +SATPG +E E     + EQ++RPTGL+DP V
Sbjct: 364 YGFRLPSALDNRPLRFEEFEERSPQTIYISATPGPYEQEHSDN-VAEQVVRPTGLIDPEV 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR  +TQV+D+  EI     QG RIL+T LTKRMAEDLTEYL E  I+VRY+HS+V T+
Sbjct: 423 EIRPVKTQVDDLMSEIRQVIAQGSRILVTTLTKRMAEDLTEYLSEHGIKVRYLHSDVDTV 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 483 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  + ILYADT+T S+Q A+ ET RRREKQ   N KH I P+ + + + ++++   + 
Sbjct: 543 RNVKGRAILYADTMTGSMQRALTETERRREKQKAFNLKHGITPKGINKSVEDILEGAYIG 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              T       +    S ++    + +L KQM+  A N+ FE AA+IRDE   LK
Sbjct: 603 KRKTMVAEQAPRYTHWSPQELAKEINALEKQMYAHAQNMEFELAAKIRDEYLLLK 657


>gi|268590298|ref|ZP_06124519.1| excinuclease ABC subunit B [Providencia rettgeri DSM 1131]
 gi|291314207|gb|EFE54660.1| excinuclease ABC subunit B [Providencia rettgeri DSM 1131]
          Length = 672

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/670 (56%), Positives = 480/670 (71%), Gaps = 14/670 (2%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           SKD   F++ +D+ P GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI    R
Sbjct: 2   SKD---FKLYSDFQPGGDQPEAIHKLREGLQDGLAHQTLLGVTGSGKTFTIANVIAQENR 58

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P ++MA NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE 
Sbjct: 59  PTMLMAHNKTLAAQLYSEMKAFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEH 118

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT++LLER D IVV+SVS IYG+G  +SY +M++ L  G  ++Q+ +L  L  
Sbjct: 119 IEQMRLSATKALLERRDVIVVASVSAIYGLGDPDSYLKMMLHLTDGMIIDQRSILRRLAD 178

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    RGTFRV G+ I+IFP+  ++ A RV +F +++E +S F PLTGQ    V
Sbjct: 179 LQYTRNDQAFTRGTFRVRGEVIDIFPAESDEYALRVELFDDEVERLSLFDPLTGQIQHRV 238

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               +Y  +HYVTPR  +  AM+ IK EL  R   L +  +LLE QR+ QR  +DLEM+ 
Sbjct: 239 PRFTVYPKTHYVTPRERILEAMEQIKVELADRRKVLLENNKLLEEQRITQRTQFDLEMMN 298

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI  MY+GD  RK
Sbjct: 299 ELGYCSGIENYSRYLSGRAPGEPPPTLFDYLPADGLLVVDESHVTIPQIGAMYKGDRSRK 358

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL EYGFRLPS +DNRP+RFEE+  L P TI VSATPG++EL++    ++EQ++RPTGL
Sbjct: 359 ETLVEYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGNYELDKSGNEVIEQVVRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+R   TQV+D+  EI +  Q+  R+L+T LTKRMAEDLTEYL E   RVRY+HS
Sbjct: 419 LDPIIEVRPVSTQVDDLLSEIRIRVQKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 479 DIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN+N K ILY D IT S+Q AI ET RRR KQ+  N++H I PQ + +KI +++ 
Sbjct: 539 IGRAARNLNGKAILYGDRITNSMQKAIAETERRRAKQMAFNEEHGIVPQGLNKKIGDILQ 598

Query: 735 ---------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
                        +D    N S+D Q  S+S K+ +  +  L  QM+  A +L FE AAR
Sbjct: 599 IGHKVGGKGKSRTKDNTKNNNSVDIQ--SMSTKELEQRISQLEAQMYKHAQDLEFEAAAR 656

Query: 786 IRDEIKRLKS 795
           +RDE++ ++S
Sbjct: 657 VRDELQEIRS 666


>gi|312796019|ref|YP_004028941.1| Excinuclease ABC subunit B [Burkholderia rhizoxinica HKI 454]
 gi|312167794|emb|CBW74797.1| Excinuclease ABC subunit B [Burkholderia rhizoxinica HKI 454]
          Length = 755

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/684 (54%), Positives = 494/684 (72%), Gaps = 12/684 (1%)

Query: 132 NNH----SKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183
           N+H    SK + F    +Q+   + P+GDQP AI QL++GI      Q LLGVTGSGKTF
Sbjct: 67  NDHALDESKFVVFDGSPYQLYQPFPPAGDQPEAIRQLVEGIQDGLAFQTLLGVTGSGKTF 126

Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243
           TMA VI  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D 
Sbjct: 127 TMANVIARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDL 186

Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303
           +IEK+SS+NE I++MR SAT+SLLER D ++V++VS IYGIG+   Y QMI+ L+ GD V
Sbjct: 187 FIEKDSSVNEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPSEYHQMILTLRDGDRV 246

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            Q+++++ L+  QY R D+   RGTFRV GD+I++FP+   ++A RV +F +++E +  F
Sbjct: 247 GQRDIIARLIAMQYMRNDVDFQRGTFRVRGDTIDVFPAEHAEMAVRVELFDDEVESLHLF 306

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
            PLTG+  + +    +Y +SHYVTPR T+  A++ IKEEL+ RL    +EG+L+EAQRLE
Sbjct: 307 DPLTGRVRQRIPRFTVYPSSHYVTPRDTVLRAVETIKEELRERLAFFHQEGKLVEAQRLE 366

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
           QR  +DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P DSL+F+DESHV I Q+
Sbjct: 367 QRTRFDLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLCDYLPADSLMFLDESHVLIGQL 426

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
           + MY GD  RK  L EYGFRLPS +DNRPL+F E+       + VSATP  +E ++  G 
Sbjct: 427 NAMYNGDRARKENLVEYGFRLPSALDNRPLKFHEFERKMRQAVFVSATPAGYE-QRNAGQ 485

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
           +VEQ++RPTGLVDP +E+R A +QV+DV  EIN     G R+L+TVLTKRMAE LTE+L 
Sbjct: 486 VVEQVVRPTGLVDPQIEVRPAISQVDDVLSEINQRVAAGERVLVTVLTKRMAEQLTEFLA 545

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +  ++VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEG
Sbjct: 546 DHGVKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEG 605

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           FLR++ SLIQTIGRAARNVN   ILY DTIT S++ A+DET RRR KQ+++N+++ I P+
Sbjct: 606 FLRAERSLIQTIGRAARNVNGYAILYGDTITDSMRRALDETERRRRKQIQYNERNGIVPR 665

Query: 724 SVKEKIMEVIDPILLEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNF 780
            V ++I ++ID +   D A   +    ++     +S K+    +K L KQM   A NL F
Sbjct: 666 GVVKRIKDIIDGVYDVDDARAELRAQQERAKIEDMSDKQLAKEIKKLEKQMLDYAKNLEF 725

Query: 781 EEAARIRDEIKRLKSSPYFQGLDD 804
           E+AA+ RD++ R K   +   + D
Sbjct: 726 EKAAQTRDQLARFKQRAFGASVGD 749


>gi|288940113|ref|YP_003442353.1| excinuclease ABC subunit B [Allochromatium vinosum DSM 180]
 gi|288895485|gb|ADC61321.1| excinuclease ABC, B subunit [Allochromatium vinosum DSM 180]
          Length = 672

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/661 (55%), Positives = 488/661 (73%), Gaps = 8/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L++G++  E    LLGVTGSGKTFT+A VI  +QRPA+++A
Sbjct: 9   FELVSPFAPAGDQPEAIRRLVEGLNDGEAGLTLLGVTGSGKTFTIANVIAQVQRPALILA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E + FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+++INE I++MR 
Sbjct: 69  PNKTLAAQLYGEMREFFPRNAVEYFVSYYDYYQPEAYVPATDTYIEKDAAINEHIEQMRL 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G  E+Y +M++ LK G+ ++Q+ +L  L + QY R 
Sbjct: 129 SATKALLERRDVIIVATVSSIYGLGDPEAYLKMVLILKRGERIDQRAILRRLAELQYTRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I + RG +RV GD I+I P+  +D A R+++F ++IE +S F PLTG+  R V    ++
Sbjct: 189 EIELSRGAYRVRGDVIDIHPAESDDEALRIALFDDEIETLSLFDPLTGEVRRQVSRYTVF 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY TPR T+  A+  IK EL+ RL  L    +L+EAQRLEQR  +DLEM+   G CQ
Sbjct: 249 PKTHYATPRETILKAIDLIKPELRERLDWLRANDKLVEAQRLEQRTLFDLEMMLEVGYCQ 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTL++Y+P D++L +DESHVT+PQ+ GMYRGD  RK  L  Y
Sbjct: 309 GIENYSRYLSGRQPGEPPPTLYDYLPPDAILVIDESHVTVPQLGGMYRGDRSRKENLVNY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+   +P TI VSATP ++E+E   G ++EQ++RPTGLVDP VE
Sbjct: 369 GFRLPSALDNRPLQFEEFQSRQPQTIYVSATPRAFEIEHS-GAVIEQVVRPTGLVDPEVE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A +QV+D+  EI        R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ T+E
Sbjct: 428 VRPALSQVDDLLSEIGPRVAADERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDIDTVE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 488 RVEIIRDLRLGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTDSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           N N K ILYAD IT S+Q AI+E+ RRR KQ+  N+   I PQ++++ + ++++      
Sbjct: 548 NANGKAILYADRITGSMQRAIEESERRRAKQIAANEAQGITPQTIRKAVADILEAHTPGA 607

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           P+   + A     + A+   L+ ++    LK+L KQM+  A NL FEEAA IRD+I+ L+
Sbjct: 608 PMKAREYARVAEQV-AEYGRLTPQQMAKRLKTLEKQMYQHAKNLEFEEAAAIRDQIRELQ 666

Query: 795 S 795
           +
Sbjct: 667 A 667


>gi|221214866|ref|ZP_03587835.1| excinuclease ABC, B subunit [Burkholderia multivorans CGD1]
 gi|221165405|gb|EED97882.1| excinuclease ABC, B subunit [Burkholderia multivorans CGD1]
          Length = 696

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/680 (55%), Positives = 492/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  
Sbjct: 13  DESKFVTFEGSPFQLYQPYPPAGDQPTAIDTLVEGVQDGLAFQTLLGVTGSGKTFTMANT 72

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 73  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQRDV 192

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IKEEL+ RL    +EG+L+EAQRLEQR  +
Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHREGKLVEAQRLEQRTRF 312

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ+
Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSATPADYE-QRVTGQIAEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A +QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  I+
Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLTEINARVKAGERVLITVLTKRMAEQLTEFLADHGIK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYADT+T+S++ AI ET RRR KQ+ +N+K  I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
             RD++  L+   +   + D
Sbjct: 671 ATRDQLALLRERVFGANVGD 690


>gi|300692026|ref|YP_003753021.1| ATP-dependent DNA excision repair enzyme, DNA damage recognition
           component [Ralstonia solanacearum PSI07]
 gi|299079086|emb|CBJ51748.1| ATP-dependent DNA excision repair enzyme, DNA damage recognition
           component [Ralstonia solanacearum PSI07]
          Length = 696

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/674 (55%), Positives = 489/674 (72%), Gaps = 9/674 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y P+GDQP AI QL +GI      Q LLGVTGSGKT+TMA V
Sbjct: 12  DESKFVTFDGSPFQLYQPYPPAGDQPEAIRQLFEGIGDGLSYQTLLGVTGSGKTYTMANV 71

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I    RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 72  IAQAGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+NE I++MR SAT+SLLER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 132 SSVNEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPTEYHQMILTLRTGDKISQRDV 191

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+++IFP+   ++A R+ +F ++++ +  F PLTG
Sbjct: 192 IARLIAMQYTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDEVDSLQLFDPLTG 251

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK EL+ RL    KE +L+EAQRLEQR  +
Sbjct: 252 RVRQKIPRFTVYPSSHYVTPRETVLRAIETIKAELRERLDFFYKENKLVEAQRLEQRTRF 311

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHV I Q++GMY 
Sbjct: 312 DLEMLQELGFCKGIENYSRHLSGAQPGEPPPTLVDYLPPDALMFLDESHVLIGQLNGMYN 371

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL+EYGFRLPS +DNRPL+F E+       + VSATP  +E ++    +VEQ+
Sbjct: 372 GDRARKETLSEYGFRLPSALDNRPLKFAEFEGKMRQVVFVSATPADYEKQRAGDEVVEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP + +R A TQV+D+  EI+   + G R+L+T LTKRMAE LTE+L E  ++
Sbjct: 432 VRPTGLVDPIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQLTEFLSEHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN   ILYAD IT S++ AI ET RRR KQ+ HN+ H I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGTAILYADRITDSMRRAIGETERRRAKQIAHNEAHGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +   AQ+ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNVDDARAELKA-AQEAAKYEDMSEKQVGKEIKRLEKQMLDHARNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPY 798
            +RD + +LKS  +
Sbjct: 671 AVRDRLAKLKSQVF 684


>gi|207743642|ref|YP_002260034.1| uvrabc system protein b (uvrb protein) (excinuclease abc subunit b)
           [Ralstonia solanacearum IPO1609]
 gi|206595041|emb|CAQ61968.1| uvrabc system protein b (uvrb protein) (excinuclease abc subunit b)
           [Ralstonia solanacearum IPO1609]
          Length = 696

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/674 (55%), Positives = 487/674 (72%), Gaps = 9/674 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK + F    FQ+   Y P+GDQP AI QLL+GI      Q LLGVTGSGKT+TMA V
Sbjct: 12  DESKFVAFEGSPFQLYQPYPPAGDQPGAIRQLLEGIGDGLSYQTLLGVTGSGKTYTMANV 71

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I    RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 72  IAQAGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+NE I++MR SAT+SLLER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 132 SSVNEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPTEYHQMILTLRTGDRISQRDV 191

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A R+ +F ++I+ +  F PLTG
Sbjct: 192 IARLIAMQYTRNETDFQRGTFRVRGDTIDIFPAEHAEMAVRLELFDDEIDSLQLFDPLTG 251

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A+  IK EL+ RL    KE +L+EAQRLEQR  +
Sbjct: 252 RVRQKIPRFTVYPSSHYVTPRETVLRAIGAIKAELRERLDFFYKENKLVEAQRLEQRTRF 311

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHV I Q +GMY 
Sbjct: 312 DLEMLQELGFCKGIENYSRHLSGAQPGEPPPTLVDYLPPDALMFLDESHVLIGQFNGMYN 371

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL+EYGFRLPS +DNRPL+F E+       + VSATP  +E ++    +VEQ+
Sbjct: 372 GDRARKETLSEYGFRLPSALDNRPLKFAEFEGKMRQVVFVSATPADYEKQRAGDEVVEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP + +R A TQV+D+  EI+   + G R+L+T LTKRMAE LTE+L E  ++
Sbjct: 432 VRPTGLVDPIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQLTEFLSEHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN   ILY D IT S++ AI ET RRR KQ+ HN+ H I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGTAILYGDRITDSMRRAIGETERRRAKQIAHNEAHGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +   AQ+ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNVDDARAELKA-AQEAAKYEDMSEKQVGKEIKRLEKQMLDHAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPY 798
            +RD++ +LKS  +
Sbjct: 671 AVRDQLAKLKSQVF 684


>gi|113970398|ref|YP_734191.1| excinuclease ABC subunit B [Shewanella sp. MR-4]
 gi|113885082|gb|ABI39134.1| Excinuclease ABC subunit B [Shewanella sp. MR-4]
          Length = 673

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/667 (55%), Positives = 486/667 (72%), Gaps = 14/667 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ + P+GDQP AIA+L+ G+ S    Q LLGVTGSGKTFT+A VI  + RP I+
Sbjct: 4   SVFQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAQLGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD++ Q+++L  L + QY 
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYMKMLLHLRQGDTMGQRDILKRLSELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ + RGTFR  G+ I+IFP+  +    RV +F ++IE +SEF PLTGQ ++ +    
Sbjct: 184 RNDLELQRGTFRARGEVIDIFPADSDRYGIRVELFDDEIERLSEFDPLTGQIVKRIARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A + IK+EL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKTHYVTPREKILEATESIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP  +ELE+  G IVEQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNPYELEKSDGEIVEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    QV+D+  E+        R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVSIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD IT+S+  A+ ET RRREKQ  +N +H I P+ V ++I +V+D   +
Sbjct: 544 ARNVNGKVILYADRITQSMAKAMGETERRREKQRAYNLEHGIVPKGVVKRITDVMD---V 600

Query: 739 EDAATTNISIDAQQLS-LSKKKGKAH----------LKSLRKQMHLAADNLNFEEAARIR 787
           +D   +        L+ +++ K K +          +  L KQMH  A NL FE+AA +R
Sbjct: 601 DDGRESEKGYRQSSLNKVAEPKAKRYQADAAQLSHDIDKLEKQMHEHARNLEFEQAAALR 660

Query: 788 DEIKRLK 794
           DE+KRL+
Sbjct: 661 DEVKRLR 667


>gi|90417042|ref|ZP_01224970.1| excinuclease ABC, B subunit [marine gamma proteobacterium HTCC2207]
 gi|90331058|gb|EAS46314.1| excinuclease ABC, B subunit [marine gamma proteobacterium HTCC2207]
          Length = 670

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/658 (55%), Positives = 483/658 (73%), Gaps = 9/658 (1%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           +DY P+GDQP AI  L++G+ +    Q LLGVTGSGKTFT+AKV+EA+QRP IVMA NK 
Sbjct: 8   SDYSPAGDQPEAIKGLVQGLQNGLAAQTLLGVTGSGKTFTVAKVMEAVQRPTIVMAHNKT 67

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
           LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++++N  I++MR SAT+
Sbjct: 68  LAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAVNSHIEQMRLSATK 127

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           +L+ER D IV+++VS IYG+G  +SY +M++ L  G+ ++Q+++L  L + QYKR DI  
Sbjct: 128 ALMERRDVIVIATVSAIYGLGDPKSYMKMLLHLSRGEKIDQRDILRRLAELQYKRNDIDF 187

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            R ++RV GD I+++P+  +  A R+ +F +++E ++ F PLTG+ +R V    IY  SH
Sbjct: 188 DRSSYRVRGDVIDVYPADSDYEALRIELFDDEVENLTLFDPLTGEVLRKVPRYTIYPKSH 247

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
           YVTPR T+  A   I  EL  RL +L    +L+EAQRL +R+ YD EM+   G C  IEN
Sbjct: 248 YVTPRHTVVEAADKIMLELDERLTQLRSVDKLVEAQRLGERVRYDSEMMRELGYCNGIEN 307

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
           YSRYL+GR PG+PPPTLF+Y+P+D+LL +DESHVT+PQI GMY+GD  RK TL EYGFRL
Sbjct: 308 YSRYLSGRPPGDPPPTLFDYLPDDALLVIDESHVTVPQIGGMYKGDRSRKETLVEYGFRL 367

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           PS +DNRPLRF+EW  L P  I VSATP  +E    +G +VEQ++RPTGL+DP +E+R A
Sbjct: 368 PSALDNRPLRFDEWEGLAPQMIFVSATPSKYEAAN-EGQVVEQVVRPTGLLDPEIEVRPA 426

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             QV+DV  EI   A    RIL+TVLTKRMAEDLT+YL E ++RVRY+HS++ T+ER+EI
Sbjct: 427 LNQVDDVLSEIKRCAAANERILITVLTKRMAEDLTDYLAEHSVRVRYLHSDIDTVERVEI 486

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           IRDLRLG+FDVLVGINLLREGLD+PE  LVAI DADKEGFLRS TSLIQTIGR+AR+V  
Sbjct: 487 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSDTSLIQTIGRSARHVRG 546

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
           K ILYAD IT S++ AIDET RRR KQ+EHN+ + + P  + + + ++++        T 
Sbjct: 547 KAILYADKITGSMRRAIDETERRRAKQVEHNRLNGLTPVGITKSVTDIMEGAYAGQGKTK 606

Query: 745 NISIDAQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                A+ L         ++ +     LK L ++M+  A NL FEEAA++RDEI +L+
Sbjct: 607 RGKKVAEGLGRYVLDEPPVAIRDIAKELKRLDEKMYQHARNLEFEEAAQVRDEIGKLR 664


>gi|167854602|ref|ZP_02477383.1| hypothetical protein HPS_02459 [Haemophilus parasuis 29755]
 gi|167854357|gb|EDS25590.1| hypothetical protein HPS_02459 [Haemophilus parasuis 29755]
          Length = 671

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/660 (56%), Positives = 488/660 (73%), Gaps = 6/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP AIA+L++G++     Q LLGVTGSGKTFT+A VI  + RPA+V+A
Sbjct: 8   FILHSPFKPSGDQPTAIAKLVEGLNDGLAHQTLLGVTGSGKTFTIANVIATLNRPAMVLA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI++MR 
Sbjct: 68  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQIEQMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G+ ++Q+++LS L + QY R 
Sbjct: 128 SATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGEMIDQRKILSRLAELQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+  + VA RV +F ++IE +S F PLTG  +  V    IY
Sbjct: 188 DQAFQRATFRVRGEVIDIFPAESDGVALRVELFDDEIENLSLFDPLTGHNLGRVPRYTIY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 248 PKTHYVTPRDRILEAIEQIKKELAERRTYFIKENKLLEEQRIAQRTQFDIEMMNELGYCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GM+RGD  RK TL +Y
Sbjct: 308 GIENYSRYLSGRKEGEPPPTLFDYMPSDGLLIIDESHVTVPQIGGMFRGDRARKETLVQY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+   +I +Q++RPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLRFEEFERLSPQTIYVSATPGPYELEKNPDVI-DQVVRPTGLLDPIIE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS++ T+E
Sbjct: 427 VRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 487 RVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D      
Sbjct: 547 NLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIVPQALNKKVGELLDIGQTDK 606

Query: 738 LEDAATTNISIDAQQLSL--SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            + +  +  S D Q      S+K+ +  LK L +QM   A +L FE+AA +RD+I +LK+
Sbjct: 607 PKRSKKSAKSSDDQTAYTPKSRKELEKELKVLEQQMRDFAKDLEFEKAAAVRDKIHQLKA 666


>gi|257485513|ref|ZP_05639554.1| excinuclease ABC subunit B [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289624159|ref|ZP_06457113.1| excinuclease ABC subunit B [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648591|ref|ZP_06479934.1| excinuclease ABC subunit B [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330869809|gb|EGH04518.1| excinuclease ABC subunit B [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330987408|gb|EGH85511.1| excinuclease ABC subunit B [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331010689|gb|EGH90745.1| excinuclease ABC subunit B [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 671

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/665 (55%), Positives = 486/665 (73%), Gaps = 14/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +V+A
Sbjct: 4   FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQVKRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+I+P+  +  A RV +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLIEAMEGIKVELQERLEYLRTQNKLVEAQRLEQRTRFDLEMMLELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G +VEQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDPQIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  EI+       R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ T+E
Sbjct: 423 IRPALTQVDDLLSEIHKRTALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           N+N + ILYAD IT S++ AI ET RRR+KQL  N +H I P+ V + + ++++      
Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRRDKQLAFNLEHGITPKGVFKDVADIMEGATVPG 602

Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                   +  AA  N   + +  S S+   +  ++ L ++M+  A +L FE AA++RDE
Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660

Query: 790 IKRLK 794
           I +L+
Sbjct: 661 IGKLR 665


>gi|54293037|ref|YP_125452.1| excinuclease ABC subunit B [Legionella pneumophila str. Lens]
 gi|81822471|sp|Q5X0E6|UVRB_LEGPL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|53752869|emb|CAH14304.1| excinuclease ABC subunit B [Legionella pneumophila str. Lens]
          Length = 663

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/655 (55%), Positives = 478/655 (72%), Gaps = 1/655 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ ++Y P+GDQP AIA L+ G+ S    Q LLGVTGSGKTFT+A VI+AM+RP ++M
Sbjct: 4   LFKIYSNYQPAGDQPTAIASLIDGLESGLAKQTLLGVTGSGKTFTIAHVIQAMKRPTLIM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR
Sbjct: 64  APNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+V++VS IYG+G  +SY +M++ L  G+  +Q+++L  L + QY R
Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMLLHLSRGEQSDQRKILKRLAEMQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++ + RG FRV GD I+IFP+  E  A R+ +F ++++ I+ F PLTG+ ++ +  + I
Sbjct: 184 TNLSLERGQFRVNGDVIDIFPADSEKEAIRIELFDDEVDNIARFDPLTGEILQRLPRVTI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  +HYVTPR  +   ++ +K EL+ RL EL  + +L+EAQRLEQR  +D+EM+   G C
Sbjct: 244 FPKTHYVTPRERILETVEKVKVELQERLAELNAQNKLVEAQRLEQRTCFDIEMMLELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+ R  GE PPTLF+Y+P ++LL +DESHVT+PQI GMYRGD  RK TL  
Sbjct: 304 SGIENYSRYLSNREAGEAPPTLFDYLPPEALLIIDESHVTVPQIGGMYRGDRARKETLVN 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+    P TI +SATPG +E E     + EQ++RPTGL+DP V
Sbjct: 364 YGFRLPSALDNRPLRFEEFEERSPQTIYISATPGPYEQEHSDN-VAEQVVRPTGLIDPEV 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR  +TQV+D+  EI     QG RIL+T LTKRMAEDLTEYL E  I+VRY+HS+V T+
Sbjct: 423 EIRPVKTQVDDLMSEIRQVIAQGSRILVTTLTKRMAEDLTEYLSEHGIKVRYLHSDVDTV 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 483 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  + ILYAD IT S+Q A+ ET RRREKQ   N KH I P+ + + + ++++   + 
Sbjct: 543 RNVKGRAILYADNITGSMQRALTETERRREKQKAFNLKHGITPKGINKSVEDILEGAYIG 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              T       +    S ++    + +L KQM+  A N+ FE AA+IRDE   LK
Sbjct: 603 KRKTMVAEQAPRYTHWSPQELAKQINALEKQMYAHAQNMEFELAAKIRDEYLLLK 657


>gi|257093910|ref|YP_003167551.1| excinuclease ABC subunit B [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257046434|gb|ACV35622.1| excinuclease ABC, B subunit [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 692

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/668 (55%), Positives = 481/668 (72%), Gaps = 8/668 (1%)

Query: 138 ITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
           ITF    F++   + P+GDQPAAIA L++G+      Q LLGVTGSGKTFTMA VI    
Sbjct: 14  ITFEGSPFRLAQPFLPAGDQPAAIAALVEGLADGLSFQTLLGVTGSGKTFTMANVIARTG 73

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPA+V+APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP  D YIEK+SSINE
Sbjct: 74  RPALVLAPNKTLAAQLYAEFREFFPENAVEYFVSYYDYYQPEAYVPARDLYIEKDSSINE 133

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
            I++MR SAT+SLLER DC++V++VSCIYGIG  + Y +MI+ +++GD + Q+E++  L 
Sbjct: 134 HIEQMRLSATKSLLERRDCVIVATVSCIYGIGDRDEYHRMILTMRVGDRIGQREVIKRLA 193

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
           + QY+R +    RGTFRV GD I++FP+   + A R+S+F ++IE +  F PLTG     
Sbjct: 194 EMQYERNETDFRRGTFRVRGDVIDVFPAEHAEQAIRISLFDDEIEGLQLFDPLTGHLQNR 253

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           +    I+ +SHYVTPR T+  A++ IK+EL  R+     EGRL+EAQR+EQR  +DLEML
Sbjct: 254 LLRFTIFPSSHYVTPRETVLRAIEKIKQELAERIAAFNAEGRLVEAQRIEQRTRFDLEML 313

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           +  G C+ IENYSR+++GR  GEPPPTL +Y+P D+L+F+DESHV+IPQ+ GMY+GD  R
Sbjct: 314 DQIGFCKGIENYSRHISGRQAGEPPPTLIDYLPADALMFIDESHVSIPQVGGMYKGDRSR 373

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K  L  YGFRLPS +DNRPL+F E+  L   TI +SATP  +E    QG +VEQ++RPTG
Sbjct: 374 KENLVNYGFRLPSALDNRPLKFAEYEALLRQTIFLSATPADYETAH-QGQVVEQVVRPTG 432

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           LVDP + +R A TQ++D+  EI L      R+L+T LTKRMAEDLT+YL E  +RVRY+H
Sbjct: 433 LVDPVLIVRPASTQIDDLLSEIRLRVSLAERVLVTTLTKRMAEDLTDYLGEHEVRVRYLH 492

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ T+ER+EIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQ
Sbjct: 493 SDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 552

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAAR+++   ILYAD +T S+  AI ET RRR KQL  N+ H I    V ++I ++I
Sbjct: 553 TIGRAARHLHGTAILYADRVTGSMSRAIAETERRRLKQLAFNEAHGIVATGVSKRITDII 612

Query: 734 DPILLEDAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           D +     A   +    QQ S   +S+K+    LK L K M   A NL FE+AA  RDE+
Sbjct: 613 DGVYDAGNAQRELKAAQQQASYEAMSEKQLARELKRLEKSMLEHAKNLEFEKAAAARDEL 672

Query: 791 KRLKSSPY 798
            R++   +
Sbjct: 673 FRIRQQVF 680


>gi|165919102|ref|ZP_02219188.1| excinuclease ABC, B subunit [Coxiella burnetii RSA 334]
 gi|165917171|gb|EDR35775.1| excinuclease ABC, B subunit [Coxiella burnetii RSA 334]
          Length = 672

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/661 (54%), Positives = 488/661 (73%), Gaps = 8/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L+ G+      Q LLGVTGSGKTFT+A  IE +QRP +++ 
Sbjct: 5   FKLTSKFKPSGDQPQAIEKLVAGLEDGLAYQTLLGVTGSGKTFTIANAIEKVQRPTLILE 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ Y+E + FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN+ I++MR 
Sbjct: 65  PNKTLAAQFYAEMREFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++ ER+D I++++VS IYG+G  +SY +M++ L  GD ++Q+++L  L + QY R 
Sbjct: 125 SATKAITERHDTIIIATVSAIYGLGDPDSYLKMLLHLTRGDQIDQRKILQRLAELQYNRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + R T+RV GD I+I+P+  E  A RV +F +++E +S F PLTG+ +R V  I +Y
Sbjct: 185 DLELRRATYRVNGDIIDIYPADSEREAVRVELFDDEVENLSYFDPLTGEMLRRVPRITVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  L + +  IK ELK RL +LEK  +L+E QRLEQR  +D+EM+   G C 
Sbjct: 245 PKTHYVTPREKLLSTLDQIKIELKERLSQLEKANKLVERQRLEQRTKFDMEMILELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTL +Y+P+D+LL +DESHVTIPQ+ GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRNEGEPPPTLIDYLPKDALLIIDESHVTIPQLGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+  L P TI +SATPG +E +Q    +VE ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFDEFEKLAPQTIFISATPGPYEEKQSDQ-VVELLVRPTGLIDPEIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A Q  R+L+T LTKRMAEDLTEY  E N+RVRY+HS++ T+E
Sbjct: 424 VRPVATQVDDLLSEIKKRAAQNERVLVTTLTKRMAEDLTEYFTEHNVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FD+LVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RVEIIRDLRLGVFDMLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736
           NV+ K ILYAD IT S++ A++E  RRR  Q  +N+KH+I P+S+++ + E+I+      
Sbjct: 544 NVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTYT 603

Query: 737 ---LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                 + A      +A+ ++++ K+    L+ L +QM+  A NL FEEAA +RD+I+ +
Sbjct: 604 ERGRFVNQAQLIAEEEAKYIAMTPKQLAKELRKLEEQMYHHARNLEFEEAAAVRDKIQHI 663

Query: 794 K 794
           +
Sbjct: 664 R 664


>gi|254497351|ref|ZP_05110154.1| excinuclease ABC subunit B [Legionella drancourtii LLAP12]
 gi|254353404|gb|EET12136.1| excinuclease ABC subunit B [Legionella drancourtii LLAP12]
          Length = 672

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/650 (55%), Positives = 477/650 (73%), Gaps = 1/650 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +++ P+GDQP AIA L+ G+ S    Q LLGVTGSGKTFT+A VI+AM+RP ++M
Sbjct: 4   LFKIYSNFQPAGDQPTAIASLIDGLKSGLAKQTLLGVTGSGKTFTIAHVIQAMRRPTLIM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR
Sbjct: 64  APNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+V++VS IYG+G  +SY +M++ L  G+   Q+++L  L + QY R
Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMVLHLSRGEHTGQRKILQRLAEMQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++ + RG FRV GD I+IFP+  E  A R+ +F +++E I++F PLTG+  + +  + I
Sbjct: 184 TNMSLERGQFRVHGDVIDIFPADSEREAIRIELFDDEVENIAQFDPLTGEVAQRLPRVTI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  +HYVTPR  +   + ++KEEL  RL E   + +L+EAQRLEQR  +D+EM+   G C
Sbjct: 244 FPKTHYVTPRERILETIDWVKEELHERLAEFNAQNKLVEAQRLEQRTYFDIEMMLELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+ R+ G+ PPTLF+Y+P ++LL +DESHVTIPQI  MY+GD  RK TL +
Sbjct: 304 SGIENYSRYLSARSAGQAPPTLFDYLPPEALLVIDESHVTIPQIGAMYKGDRSRKETLVQ 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+    P TI +SATPG +E E     + EQ++RPTGLVDP V
Sbjct: 364 YGFRLPSALDNRPLRFEEFEERSPQTIYISATPGPYEKEHADN-VAEQVVRPTGLVDPEV 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR  RTQV+D+  E     QQG R+L+T LTKRMAEDLT+YL E  I+VRY+HS+V T+
Sbjct: 423 EIRPVRTQVDDLMSEARQVIQQGGRVLVTTLTKRMAEDLTDYLNEHGIKVRYLHSDVDTV 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAA
Sbjct: 483 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVVLVAILDADKEGFLRSDRSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN + ILYAD +T S+Q A+DET+RRR+KQ   N+ H I P+ + + + ++++   + 
Sbjct: 543 RNVNGRAILYADKVTGSMQRALDETSRRRDKQRAFNETHGITPKGINKSVADIMEAAYIG 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                      +    S ++   H+ +L KQM++ A N+ FE AA++RD+
Sbjct: 603 KRKDVVAEPIPEYAHWSTQELVKHINTLEKQMYMHAKNMEFEAAAKVRDQ 652


>gi|153207959|ref|ZP_01946512.1| excinuclease ABC, B subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|212218858|ref|YP_002305644.1| excinuclease ABC subunit B [Coxiella burnetii CbuK_Q154]
 gi|226698332|sp|B6J8A0|UVRB_COXB1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|120576260|gb|EAX32884.1| excinuclease ABC, B subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|212013120|gb|ACJ20500.1| excinuclease ABC subunit B [Coxiella burnetii CbuK_Q154]
          Length = 672

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/661 (54%), Positives = 488/661 (73%), Gaps = 8/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L+ G+      Q LLGVTGSGKTFT+A  IE +QRP +++ 
Sbjct: 5   FKLTSKFKPSGDQPQAIEKLVAGLEDGLAYQTLLGVTGSGKTFTIANAIEKVQRPTLILE 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ Y+E + FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN+ I++MR 
Sbjct: 65  PNKTLAAQFYAEMREFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++ ER+D I++++VS IYG+G  +SY +M++ L  GD ++Q+++L  L + QY R 
Sbjct: 125 SATKAITERHDTIIIATVSAIYGLGDPDSYLKMLLHLTRGDQIDQRKILQRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + R T+RV GD I+I+P+  E  A RV +F +++E +S F PLTG+ +R V  I +Y
Sbjct: 185 DLELRRATYRVNGDIIDIYPADSEREAVRVELFDDEVENLSYFDPLTGEMLRRVPRITVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  L + +  IK ELK RL +LEK  +L+E QRLEQR  +D+EM+   G C 
Sbjct: 245 PKTHYVTPREKLLSTLDQIKIELKERLSQLEKANKLVERQRLEQRTKFDMEMILELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTL +Y+P+D+LL +DESHVTIPQ+ GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRNEGEPPPTLIDYLPKDALLIIDESHVTIPQLGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+  L P TI +SATPG +E +Q    +VE ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFDEFEKLAPQTIFISATPGPYEEKQSDQ-VVELLVRPTGLIDPEIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A Q  R+L+T LTKRMAEDLTEY  E N+RVRY+HS++ T+E
Sbjct: 424 VRPVATQVDDLLSEIKKRAAQNERVLVTTLTKRMAEDLTEYFTEHNVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FD+LVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RVEIIRDLRLGVFDMLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736
           NV+ K ILYAD IT S++ A++E  RRR  Q  +N+KH+I P+S+++ + E+I+      
Sbjct: 544 NVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTYT 603

Query: 737 ---LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                 + A      +A+ ++++ K+    L+ L +QM+  A NL FEEAA +RD+I+ +
Sbjct: 604 ERGRFVNQAQLIAEEEAKYIAMTPKQLAKELRKLEEQMYHHARNLEFEEAAAVRDKIQHI 663

Query: 794 K 794
           +
Sbjct: 664 R 664


>gi|117920610|ref|YP_869802.1| excinuclease ABC subunit B [Shewanella sp. ANA-3]
 gi|117612942|gb|ABK48396.1| Excinuclease ABC subunit B [Shewanella sp. ANA-3]
          Length = 673

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/667 (55%), Positives = 485/667 (72%), Gaps = 14/667 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ + P+GDQP AIA+L+ G+ S    Q LLGVTGSGKTFT+A VI  + RP I+
Sbjct: 4   SVFQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAQLGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD++ Q+++L  L + QY 
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYMKMLLHLRQGDTMGQRDILKRLSELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ + RGTFR  G+ I+IFP+  +    RV +F ++IE +SEF PLTGQ ++ +    
Sbjct: 184 RNDLELQRGTFRARGEVIDIFPADSDRYGIRVELFDDEIERLSEFDPLTGQIVKRIARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A + IK+EL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKTHYVTPREKILEATESIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP  +EL++  G IVEQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNPYELDKSGGEIVEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    QV+D+  E+        R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVSIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD IT+S+  A+ ET RRREKQ  +N +H I P+ V ++I +V+D   +
Sbjct: 544 ARNVNGKVILYADRITQSMAKAMGETERRREKQHAYNLEHGIVPKGVVKRITDVMD---V 600

Query: 739 EDAATTNISIDAQQLS-LSKKKGKAH----------LKSLRKQMHLAADNLNFEEAARIR 787
           +D   T        L  +++ K K +          +  L KQMH  A NL FE+AA +R
Sbjct: 601 DDGRDTEKGYSPSSLGKVAEPKAKRYQADAAQLSHDIDKLEKQMHEHARNLEFEQAAALR 660

Query: 788 DEIKRLK 794
           DE+KRL+
Sbjct: 661 DEVKRLR 667


>gi|109899270|ref|YP_662525.1| excinuclease ABC subunit B [Pseudoalteromonas atlantica T6c]
 gi|109701551|gb|ABG41471.1| Excinuclease ABC subunit B [Pseudoalteromonas atlantica T6c]
          Length = 669

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/660 (55%), Positives = 476/660 (72%), Gaps = 8/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y P+GDQP AI  L+ G+ S    Q LLGVTGSGKTFTMA VI  +QRP +++A
Sbjct: 5   FQLTSNYSPAGDQPKAIQALVDGLESGLAAQTLLGVTGSGKTFTMANVINEVQRPTLILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+N  I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++VSSVS IYG+G  +SY +M++  + GD + Q+++L  L + QY R 
Sbjct: 125 SATKALMERRDVVIVSSVSAIYGLGDPDSYMKMLLHFRQGDIMNQRDILRRLAEIQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD I+IFP+  E  A RV +F  ++E IS F PLTG   + V    I+
Sbjct: 185 DVAFERGTFRVRGDVIDIFPADSEREAVRVELFDEEVERISIFDPLTGAVEKTVARATIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A+++IK+ELK R  +L    +L+E QR+ QR  +D+EM++  G C 
Sbjct: 245 PKTHYVTPREKILDAVEHIKDELKERKAQLLSVNKLIEEQRISQRCQFDMEMMQELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PG+PPPTL +Y P D L+F+DESHVT+ QI  MY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRTPGDPPPTLIDYFPADGLMFIDESHVTVSQIGAMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+  + P TI VSATPG +EL +    IVEQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFDEFEQIAPQTIYVSATPGKYELAKTPDDIVEQVVRPTGLIDPEIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI        R+L+T LTKRM+EDL+EYL E N++ RY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLLSEIEKCVALNERVLVTTLTKRMSEDLSEYLDEHNVKARYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RIEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++N + ILYAD IT S+Q A+DET RRREKQ EHNKKHNI P  + + I +++D  + E 
Sbjct: 545 HINGRAILYADRITGSMQRAMDETDRRREKQREHNKKHNIVPTQLNKPITDIMD--VGEG 602

Query: 741 AATTNISIDAQQLSLSKKKGKA------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +    + +     S  K  G +       +  L K+M   A +L FE+AA +RDE++ L+
Sbjct: 603 SGQGKVMLRKVAESGKKYNGMSAPELMKSIAELEKKMFQMAKDLEFEQAASLRDEVETLR 662


>gi|154706129|ref|YP_001424888.1| excinuclease ABC subunit B [Coxiella burnetii Dugway 5J108-111]
 gi|189037962|sp|A9KCU2|UVRB_COXBN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|154355415|gb|ABS76877.1| excinuclease ABC subunit B [Coxiella burnetii Dugway 5J108-111]
          Length = 672

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/661 (54%), Positives = 488/661 (73%), Gaps = 8/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L+ G+      Q LLGVTGSGKTFT+A  IE +QRP +++ 
Sbjct: 5   FKLTSKFKPSGDQPQAIEKLVAGLEDGLAYQTLLGVTGSGKTFTIANAIEKVQRPTLILE 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ Y+E + FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN+ I++MR 
Sbjct: 65  PNKTLAAQFYAEMREFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++ ER+D I++++VS IYG+G  +SY +M++ L  GD ++Q+++L  L + QY R 
Sbjct: 125 SATKAITERHDTIIIATVSAIYGLGDPDSYLKMLLHLTRGDQIDQRKILQRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + R T+RV GD I+I+P+  E  A RV +F +++E +S F PLTG+ +R V  I +Y
Sbjct: 185 DLELRRATYRVNGDIIDIYPADSEREAVRVELFDDEVENLSYFDPLTGEMLRRVPRITVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  L + +  IK ELK RL +LEK  +L+E QRLEQR  +D+EM+   G C 
Sbjct: 245 PKTHYVTPREKLLSTLDQIKIELKERLSQLEKANKLVERQRLEQRTKFDMEMILELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTL +Y+P+D+LL +DESHVTIPQ+ GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRNEGEPPPTLIDYLPKDALLIIDESHVTIPQLGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+  L P TI +SATPG +E +Q    +VE ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFDEFEKLAPQTIFISATPGPYEEKQSDQ-VVELLVRPTGLIDPEIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A Q  R+L+T LTKRMAEDLTEY  E N+RVRY+HS++ T+E
Sbjct: 424 VRPVATQVDDLLSEIKKRAAQNERVLVTTLTKRMAEDLTEYFTEHNVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736
           NV+ K ILYAD IT S++ A++E  RRR  Q  +N+KH+I P+S+++ + E+I+      
Sbjct: 544 NVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTYT 603

Query: 737 ---LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                 + A      +++ ++++ K+    L+ L +QM+  A NL FEEAA +RD+I+ +
Sbjct: 604 ERGRFVNQAQLIAEEESKYIAMTPKQLAKELRKLEEQMYHHARNLEFEEAAAVRDKIQHI 663

Query: 794 K 794
           +
Sbjct: 664 R 664


>gi|170768976|ref|ZP_02903429.1| excinuclease ABC, B subunit [Escherichia albertii TW07627]
 gi|170122048|gb|EDS90979.1| excinuclease ABC, B subunit [Escherichia albertii TW07627]
          Length = 673

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/664 (57%), Positives = 480/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  +SY +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDSYLKMMLHLTVGMIIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +DVA RV +F  ++E +S F PLTGQ I  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDVALRVELFDEEVERLSLFDPLTGQIISTIARYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELADRRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++   L + 
Sbjct: 545 NVNGKAILYGDKITPSMAKAISETERRREKQQRYNEEHGITPQGLNKKVVDIL--ALGQS 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L  QM   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRAIVEPDNVPMDMSPKALQQKIHELEAQMMKHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|293390328|ref|ZP_06634662.1| excinuclease ABC subunit B [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290950862|gb|EFE00981.1| excinuclease ABC subunit B [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 680

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/668 (55%), Positives = 482/668 (72%), Gaps = 15/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP AIA+L + +      Q LLGVTGSGKTFT+A VI  + RPA+V+A
Sbjct: 10  FILHSHFKPSGDQPQAIAKLAENLEDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 70  PNKTLAAQLYAEMKDFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY +M++ L+ G  + Q+++L+ L + QY R 
Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQQGAIINQRQILAKLAELQYTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A R+ +F  +IE +S F PLTG     V    +Y
Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDGEIERLSLFDPLTGSSFGTVPRFTVY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 250 PKTHYVTPRERILDAIEKIKLELAQRREYFTKENKLLEEQRISQRTQFDIEMMNELGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+ RN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 310 GIENYSRYLSDRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+  G I++Q++RPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGGEIIDQVVRPTGLLDPQIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 430 IRPVSIQVDDLLSEARHRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ K ILYAD ITKS++ AI ET RRREKQ ++N+   I PQ++ +K+ E++D   +  
Sbjct: 550 NLHGKAILYADNITKSMEKAITETNRRREKQAKYNEAQGIMPQALNKKVGELLD---IGQ 606

Query: 741 AATTNISIDAQQLSL------------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            A      + Q+               S K+ +  +K L +QM+  A +L FE+AA  RD
Sbjct: 607 GANQKAKANKQRGKTVAEPTALYTTLKSPKEYQQQIKKLEQQMYKFAQDLEFEKAAATRD 666

Query: 789 EIKRLKSS 796
           ++++L+ S
Sbjct: 667 QLQQLRES 674


>gi|238920712|ref|YP_002934227.1| excinuclease ABC subunit B [Edwardsiella ictaluri 93-146]
 gi|259710325|sp|C5BEJ2|UVRB_EDWI9 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238870281|gb|ACR69992.1| excinuclease ABC subunit B, putative [Edwardsiella ictaluri 93-146]
          Length = 672

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/664 (56%), Positives = 480/664 (72%), Gaps = 13/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +VMA
Sbjct: 5   FKLHSAFQPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKQFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRSILRRLSELQYVRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A RV +F +++E +S F PLTGQ +R V    +Y
Sbjct: 185 DQAFARGTFRVRGEVIDIFPAEADDEALRVELFDDEVERLSLFDPLTGQLLRTVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ I+ EL MR   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEAIRAELAMRRQSLLASNKLLEEQRLAQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++EL++  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGNYELDKSGGEVIDQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EINL A  G R+L+T LTKRMAEDLTEYL E  +RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEINLRAAIGERVLVTTLTKRMAEDLTEYLEEHGVRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FD LVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDALVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD IT S+  AI ET RRRE+Q   N  H I PQ++ +K+ +++    L D
Sbjct: 545 NLNGKAILYADKITPSMARAIGETERRRERQQAFNLAHGITPQALNKKVTDILQ---LGD 601

Query: 741 AATTNISIDAQQL----------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
               + +  A+            +LS K+ +  ++ L  QM+  A NL FE+AA +RDEI
Sbjct: 602 GPVRSRTKGARGQRAAEPHPDYHTLSAKQIEQQIQRLETQMYQHAQNLEFEQAAALRDEI 661

Query: 791 KRLK 794
             L+
Sbjct: 662 HILR 665


>gi|261868251|ref|YP_003256173.1| excinuclease ABC subunit B [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413583|gb|ACX82954.1| excinuclease ABC subunit B [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 680

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/668 (55%), Positives = 482/668 (72%), Gaps = 15/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP AIA+L + +      Q LLGVTGSGKTFT+A VI  + RPA+V+A
Sbjct: 10  FILHSHFKPSGDQPQAIAKLAENLEDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 70  PNKTLAAQLYAEMKDFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY +M++ L+ G  + Q+++L+ L + QY R 
Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQQGAIINQRQILAKLAELQYTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A R+ +F  +IE +S F PLTG     V    +Y
Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDGEIERLSLFDPLTGSSFGTVPRFTVY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 250 PKTHYVTPRERILDAIEKIKLELAQRREYFTKENKLLEEQRISQRTQFDIEMMNELGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+ RN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 310 GIENYSRYLSDRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+  G I++Q++RPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGGEIIDQVVRPTGLLDPQIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 430 IRPVSIQVDDLLSEARHRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ K ILYAD ITKS++ AI ET RRREKQ ++N+   I PQ++ +K+ E++D   +  
Sbjct: 550 NLHGKAILYADNITKSMEKAITETNRRREKQAKYNEAQGIVPQALNKKVGELLD---IGQ 606

Query: 741 AATTNISIDAQQ------------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            A      + Q+               S K+ +  +K L +QM+  A +L FE+AA  RD
Sbjct: 607 GANQKAKANKQRGKTVAEPTALYTTPKSPKEYQQQIKKLEQQMYKFAQDLEFEKAAATRD 666

Query: 789 EIKRLKSS 796
           ++++L+ S
Sbjct: 667 QLQQLRES 674


>gi|237653104|ref|YP_002889418.1| excinuclease ABC subunit B [Thauera sp. MZ1T]
 gi|237624351|gb|ACR01041.1| excinuclease ABC, B subunit [Thauera sp. MZ1T]
          Length = 695

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/662 (55%), Positives = 481/662 (72%), Gaps = 5/662 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AI  L +G+      Q LLGVTGSGKT+TMA VI  M RPA+V+A
Sbjct: 27  FRLHQPFPPAGDQPEAIRLLCEGVEDGLMYQTLLGVTGSGKTYTMANVIARMGRPALVLA 86

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+EFK F P NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++MR 
Sbjct: 87  PNKTLAAQLYAEFKEFLPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQMRL 146

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SL+ER D ++V++VSCIYGIG    Y  MI+ L+ G+ +  ++L+  LV  QY R 
Sbjct: 147 SATKSLMERRDVVIVATVSCIYGIGDPVDYHAMILHLREGERMAHRDLIQRLVAMQYTRA 206

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD I++FP+   ++A R+ MF ++IE ++ F PLTG     +    +Y
Sbjct: 207 DIDFRRGTFRVRGDVIDVFPAENAELAVRIEMFDDEIEHLTLFDPLTGHLRHKLARFTVY 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A++ IKEELK R+   ++EG+L+EAQR+EQR  +DLEML   G C+
Sbjct: 267 PSSHYVTPRATVLQAIEAIKEELKERVAFFQREGKLVEAQRIEQRTRFDLEMLNEMGFCK 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTL +Y+P+D+L+F+DESHV I Q+ GMY+GD  RK  L  Y
Sbjct: 327 GIENYSRHLSGRGPGEPPPTLIDYLPQDALMFIDESHVAIGQVGGMYKGDRSRKENLVGY 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+  L P T+ VSATP  +E E+ QG +VEQ++RPTGL+DP VE
Sbjct: 387 GFRLPSALDNRPLKFDEFERLMPQTVFVSATPAKYE-EEHQGQVVEQVVRPTGLIDPMVE 445

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI        R+L+TVLTKRMAEDLT+YL +  IRVRY+HS++ T+E
Sbjct: 446 VRPAMTQVDDLLGEIKKRLAVNERVLVTVLTKRMAEDLTDYLADNGIRVRYLHSDIDTVE 505

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 506 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSARSLIQTIGRAAR 565

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +++   ILYAD IT S++ AI ET RRR KQ+  N+ + I P+SV ++I ++ID +   D
Sbjct: 566 HLHGTAILYADRITDSMKAAIGETERRRNKQIAFNEANGIVPKSVTKRIKDIIDGVYDSD 625

Query: 741 AATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A  + +  A + S    + +K     +K L K+M   A NL FE+AA  RDE+ +L+  
Sbjct: 626 GAKRDAARVADKGSDYAVMDEKALARAIKRLEKEMQEHARNLEFEKAAAARDELFKLRER 685

Query: 797 PY 798
            +
Sbjct: 686 AF 687


>gi|83745732|ref|ZP_00942789.1| Excinuclease ABC subunit B [Ralstonia solanacearum UW551]
 gi|83727422|gb|EAP74543.1| Excinuclease ABC subunit B [Ralstonia solanacearum UW551]
          Length = 786

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/671 (55%), Positives = 486/671 (72%), Gaps = 9/671 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK + F    FQ+   Y P+GDQP AI QLL+GI      Q LLGVTGSGKT+TMA V
Sbjct: 102 DESKFVAFEGSPFQLYQPYPPAGDQPGAIRQLLEGIGDGLSYQTLLGVTGSGKTYTMANV 161

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I    RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 162 IAQAGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 221

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+NE I++MR SAT+SLLER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 222 SSVNEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPTEYHQMILTLRTGDRISQRDV 281

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A R+ +F ++I+ +  F PLTG
Sbjct: 282 IARLIAMQYTRNETDFQRGTFRVRGDTIDIFPAEHAEMAVRLELFDDEIDSLQLFDPLTG 341

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A+  IK EL+ RL    KE +L+EAQRLEQR  +
Sbjct: 342 RVRQKIPRFTVYPSSHYVTPRETVLRAIGAIKAELRERLDFFYKENKLVEAQRLEQRTRF 401

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHV I Q +GMY 
Sbjct: 402 DLEMLQELGFCKGIENYSRHLSGAQPGEPPPTLVDYLPPDALMFLDESHVLIGQFNGMYN 461

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL+EYGFRLPS +DNRPL+F E+       + VSATP  +E ++    +VEQ+
Sbjct: 462 GDRARKETLSEYGFRLPSALDNRPLKFAEFEGKMRQVVFVSATPADYEKQRAGDEVVEQV 521

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP + +R A TQV+D+  EI+   + G R+L+T LTKRMAE LTE+L E  ++
Sbjct: 522 VRPTGLVDPIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQLTEFLSEHGVK 581

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 582 VRYLHSDIDTVERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 641

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN   ILY D IT S++ AI ET RRR KQ+ HN+ H I P+ V ++
Sbjct: 642 RSLIQTIGRAARNVNGTAILYGDRITDSMRRAIGETERRRAKQIAHNEAHGITPRGVVKR 701

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +   AQ+ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 702 IKDIIDGVYNVDDARAELKA-AQEAAKYEDMSEKQVGKEIKRLEKQMLDHAKNLEFEKAA 760

Query: 785 RIRDEIKRLKS 795
            +RD++ +LKS
Sbjct: 761 AVRDQLAKLKS 771


>gi|115352299|ref|YP_774138.1| excinuclease ABC subunit B [Burkholderia ambifaria AMMD]
 gi|115282287|gb|ABI87804.1| Excinuclease ABC subunit B [Burkholderia ambifaria AMMD]
          Length = 696

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/680 (54%), Positives = 491/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  
Sbjct: 13  DESKFVTFEGSPFQLYQPYPPAGDQPTAIETLVEGVGDGLAFQTLLGVTGSGKTFTMANT 72

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 73  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y +MI+ L+ GD + Q+++
Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHKMILTLRAGDKLGQRDV 192

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R D    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 193 IARLIAMQYSRNDQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IKEEL+ RL    ++G+L+EAQRLEQR  +
Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHRDGKLVEAQRLEQRTRF 312

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ+
Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A +QV+DV  EIN     G R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLTEINARVNAGERVLITVLTKRMAEQLTEFLADHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYADT+T+S++ AI ET RRR KQ+ HN+K  I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAHNEKMGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
             RD++  L+   +   + D
Sbjct: 671 ATRDQLALLRERVFGANVGD 690


>gi|253998973|ref|YP_003051036.1| excinuclease ABC subunit B [Methylovorus sp. SIP3-4]
 gi|253985652|gb|ACT50509.1| excinuclease ABC, B subunit [Methylovorus sp. SIP3-4]
          Length = 678

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/666 (55%), Positives = 481/666 (72%), Gaps = 6/666 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +Q+   + P+GDQPAAI +++ GI    + Q LLGVTGSGKT+TMA VI    RPA+VMA
Sbjct: 10  YQLHQPFPPAGDQPAAIEKIITGIEQGMQYQTLLGVTGSGKTYTMANVIARTGRPAMVMA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP  D +IEK+SSIN+ I++MR 
Sbjct: 70  PNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINDHIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER D I+V++VS IYGIG    Y  M++ +  G  + Q+++++ L+  QY R 
Sbjct: 130 SATKSLLEREDSIIVATVSAIYGIGDPGEYHGMVLHIHQGMKISQRDIVNKLITMQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD +++FPS   + A R+S+F ++IE I  F PLTGQ    +   +I+
Sbjct: 190 DFDFSRGAFRVRGDVVDVFPSENSETAVRISLFDDEIETIQLFDPLTGQVFNKIHNFRIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVT R     AM+ IK+EL+ R+    K  +L+EAQR+EQR  +DLEML   G C+
Sbjct: 250 PSSHYVTAREATVRAMETIKQELRDRVDFFIKNNKLVEAQRIEQRTRFDLEMLNEIGFCK 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR+PG+ PPTL +Y+P ++L+ +DESHVTIPQI GMY+GD  RK  L +Y
Sbjct: 310 GIENYSRHLTGRSPGDAPPTLIDYLPANALMIIDESHVTIPQIGGMYKGDRARKENLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  +   T+ VSATP  +E    Q  +VEQ+ RPTGL+DP + 
Sbjct: 370 GFRLPSALDNRPLRFEEFERIMRQTVFVSATPADYEATH-QEQVVEQVARPTGLIDPEIT 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ A TQV+D+  EI L    G R+L T LTKRMAEDLT+YL E  ++VRY+HS++ T+E
Sbjct: 429 VKPADTQVDDLLSEIKLRVAVGERVLATTLTKRMAEDLTDYLSEHGVKVRYLHSDIDTVE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQT GRAAR
Sbjct: 489 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTAGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N KVI YA+ IT+S++LA+DET RRR KQ+  N+ H I P+ V ++I ++ID +  +D
Sbjct: 549 NLNGKVIFYANNITRSMKLAMDETQRRRTKQMAFNEAHGIVPKGVTKRIKDIIDGVYDKD 608

Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            A         Q S   LS+K+    +K L K MH +A NL FE+AA  RD++K+LK+  
Sbjct: 609 DAKRERQAAQDQASYEALSEKQIIKEMKRLEKSMHDSAQNLEFEKAAEFRDQLKKLKAK- 667

Query: 798 YFQGLD 803
            F G D
Sbjct: 668 -FYGTD 672


>gi|160872333|ref|ZP_02062465.1| excinuclease ABC, B subunit [Rickettsiella grylli]
 gi|159121132|gb|EDP46470.1| excinuclease ABC, B subunit [Rickettsiella grylli]
          Length = 669

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/674 (54%), Positives = 494/674 (73%), Gaps = 20/674 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI  L+KG+ S    Q LLGVTGSGKTF++A VI+ +QRP +++A
Sbjct: 5   FELISNFKPAGDQPTAIKALVKGLQSGLAYQTLLGVTGSGKTFSIAHVIQKIQRPVLILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E ++FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+++INE I++MR 
Sbjct: 65  PNKTLAAQLYGEMRSFFPHNAVEYFVSYYDYYQPEAYVPTTDTYIEKDAAINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER D I+V++VS IYG+G   +Y  M++ ++ GD + Q+ +L  L + QY R 
Sbjct: 125 SATKSLLERRDVIIVATVSAIYGLGDPNTYVDMMLHIRRGDEICQRFILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R T+RV GD I+++P+   + A R+ +  + IE +S F PLTG+  R V  + IY
Sbjct: 185 DTDFRRATYRVRGDVIDVYPAESAEEAVRIELLDDTIEHLSFFDPLTGELYRRVPRLTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  + +A++ I+ ELK RL +L+   +L+E QRLEQR  +D+EML   G C 
Sbjct: 245 PKTHYVTPRDKILSAVESIQRELKERLAQLQSAHKLIEFQRLEQRTRFDIEMLLELGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR+ G+PPPTL +Y+P+D+LL +DESHVT+PQ+S MYRGD  RK TL  Y
Sbjct: 305 GIENYSRYLSGRDAGQPPPTLMDYLPKDALLVIDESHVTVPQLSAMYRGDRSRKETLVAY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E++     T+ +SATP ++ELE+  G IVEQ+IRPTGLVDP +E
Sbjct: 365 GFRLPSALDNRPLQFQEFSDFAFQTVYISATPSTYELERS-GAIVEQVIRPTGLVDPVIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI+    +  R+L+T LTKR++EDLTEYL E N++VRY+HS++ T+E
Sbjct: 424 VRPQATQVDDLLSEIHYCVAKNERVLVTTLTKRLSEDLTEYLAEHNVKVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RVEIIRDLRLGQFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++  + ILYAD IT S+Q AIDET RRR KQL  NKKH+I P+ + + + +++      +
Sbjct: 544 HIQGRAILYADKITGSMQKAIDETERRRNKQLAFNKKHHITPKGIAKAVHDIL------E 597

Query: 741 AATTNISIDAQQL-----------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            A +++S   Q++           +LS ++   H+K L ++M   A NL FEEAA  RD+
Sbjct: 598 GAKSDMSTHKQRVLNVAEARAYYATLSPEECAKHIKQLEREMFHYAKNLQFEEAAETRDK 657

Query: 790 IKRLKSSPYFQGLD 803
           +K+LK      G+D
Sbjct: 658 LKKLKEK--IMGID 669


>gi|313201077|ref|YP_004039735.1| excinuclease ABC subunit B [Methylovorus sp. MP688]
 gi|312440393|gb|ADQ84499.1| excinuclease ABC, B subunit [Methylovorus sp. MP688]
          Length = 681

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/666 (55%), Positives = 481/666 (72%), Gaps = 6/666 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +Q+   + P+GDQPAAI +L+ GI    + Q LLGVTGSGKT+TMA VI    RPA+VMA
Sbjct: 13  YQLHQPFPPAGDQPAAIEKLITGIEQGMQYQTLLGVTGSGKTYTMANVIARTGRPAMVMA 72

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP  D +IEK+SSIN+ I++MR 
Sbjct: 73  PNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINDHIEQMRL 132

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER D I+V++VS IYGIG    Y  M++ +  G  + Q+++++ L+  QY R 
Sbjct: 133 SATKSLLEREDSIIVATVSAIYGIGDPGEYHGMVLHIHQGMKISQRDIVNKLITMQYDRN 192

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD +++FPS   + A R+S+F ++IE I  F PLTGQ    +   +I+
Sbjct: 193 DFDFSRGAFRVRGDVVDVFPSENSETAVRISLFDDEIETIQLFDPLTGQVFNKIHNFRIF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVT R     AM+ IK+EL+ R+    K  +L+EAQR+EQR  +DLEML   G C+
Sbjct: 253 PSSHYVTAREATVRAMETIKQELRDRVDFFIKNNKLVEAQRIEQRTRFDLEMLNEIGFCK 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR+PG+ PPTL +Y+P ++L+ +DESHVTIPQI GMY+GD  RK  L +Y
Sbjct: 313 GIENYSRHLTGRSPGDAPPTLIDYLPANALMIIDESHVTIPQIGGMYKGDRARKENLVDY 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  +   T+ VSATP  +E    Q  +VEQ+ RPTGL+DP + 
Sbjct: 373 GFRLPSALDNRPLRFEEFERIMRQTVFVSATPADYEATH-QEQVVEQVARPTGLIDPEIT 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ A TQV+D+  EI L    G R+L T LTKRMAEDLT+YL E  ++VRY+HS++ T+E
Sbjct: 432 VKPADTQVDDLLSEIKLRVAVGERVLATTLTKRMAEDLTDYLSEHGVKVRYLHSDIDTVE 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQT GRAAR
Sbjct: 492 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTAGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N KVI YA+ IT+S++LA+DET RRR KQ+  N+ H I P+ V ++I ++ID +  +D
Sbjct: 552 NLNGKVIFYANNITRSMKLAMDETQRRRIKQMAFNEAHGIVPKGVTKRIKDIIDGVYDKD 611

Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            A         Q S   LS+K+    +K L K MH +A NL FE+AA  RD++K+LK+  
Sbjct: 612 DAKRERQAAQDQASYEALSEKQIIKEMKRLEKSMHDSAQNLEFEKAAEFRDQLKKLKAK- 670

Query: 798 YFQGLD 803
            F G D
Sbjct: 671 -FYGTD 675


>gi|167623863|ref|YP_001674157.1| excinuclease ABC subunit B [Shewanella halifaxensis HAW-EB4]
 gi|167353885|gb|ABZ76498.1| excinuclease ABC, B subunit [Shewanella halifaxensis HAW-EB4]
          Length = 667

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/659 (55%), Positives = 482/659 (73%), Gaps = 4/659 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ Y P+GDQP AI +L+ G+ S    Q LLGVTGSGKTFT+A VIE M RP I+
Sbjct: 4   SVFQLESMYKPAGDQPTAINKLVDGLESGVACQTLLGVTGSGKTFTIANVIEKMSRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP T T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTGTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  ++Y +M++ L+ G ++EQ+++L  L + QY 
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPKAYMKMLLHLREGGNMEQRDILKRLSELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGT+RV G+ I+IFP+  +  A R+ +F ++IE +S F PLTG  ++ +  I 
Sbjct: 184 RNDIELQRGTYRVRGEVIDIFPADSDKNAIRIELFDDEIERLSLFDPLTGHIVKRIARIT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYVTPR ++  A + IKEEL+ R  +L    +L+E QR+ +R+ YDLEM+   G 
Sbjct: 244 VYPKSHYVTPRESILAATEEIKEELRERKKQLLDLNKLIEEQRITERVQYDLEMMTELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  G+ PPTL +Y+PED LL +DESHVT+PQI  MY+GD  RK  L 
Sbjct: 304 CSGIENYSRYLSGRASGDGPPTLLDYLPEDGLLIIDESHVTVPQIGAMYKGDRSRKMNLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P +I VSATP ++E+E+  G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEALMPQSIFVSATPSAYEIEKSDGEIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI        R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 IEVRPVSTQVDDLLSEIGKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVL+GINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGVFDVLIGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILY D ITKS+  AI ET RRRE Q +HN  + I P+ V +KI +V+D    
Sbjct: 544 ARNVNGKVILYGDRITKSMDKAITETNRRREMQHQHNLDNGIIPKGVIKKITDVMDVGDH 603

Query: 739 E--DAATTNISIDAQQLSLSKKKGKAH-LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E  D+      I+  +  ++K    +H +  L KQMH  A NL FEEAA IRD++ RL+
Sbjct: 604 EYVDSERGVAEIEG-EYHVAKPADISHDIDRLEKQMHEHAKNLEFEEAAAIRDKVGRLR 661


>gi|37525442|ref|NP_928786.1| excinuclease ABC subunit B [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81834028|sp|Q7N6Q1|UVRB_PHOLL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|36784870|emb|CAE13784.1| exinuclease ABC subunit B [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 669

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/658 (56%), Positives = 479/658 (72%), Gaps = 4/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI QL +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHSDFQPGGDQPEAIRQLQEGLEDGLAHQTLLGVTGSGKTFTVANVIANLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSE K+FFP N+VEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYSEMKDFFPENSVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  +SY +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDSYLKMMLHLTNGMMIDQRSILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F +++E +S F PLTGQ   +V    +Y
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDEHALRVELFDDEVERLSLFDPLTGQVQYHVPRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL+ R   L   G+LLE QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIIQAMEAIKIELEQRRKVLLANGKLLEEQRITQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRTEGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS +DNRPLRFEE+  L P TI +SATPG +ELE+  G +VEQ++RPTGL+DP VE
Sbjct: 365 GFRMPSALDNRPLRFEEFEALAPQTIYISATPGKYELEKSSGDVVEQVVRPTGLLDPEVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRIRAVKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N++ K ILY D IT S+  AI ET RRR KQ   N+KH I P+ + +KI +++    P  
Sbjct: 545 NLHGKAILYGDKITDSMAKAIGETERRRAKQQIFNEKHGIVPKGLNKKINDILQIGQPAG 604

Query: 738 LEDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +          A+  S LS K+ ++ ++ L  +M+  A +L FE+AA +RD+++ L+
Sbjct: 605 GKRKGRGKAVATAETFSNLSAKELESKIRELEAKMYQHAQDLEFEQAASVRDQVQALR 662


>gi|329904108|ref|ZP_08273674.1| Excinuclease ABC subunit B [Oxalobacteraceae bacterium IMCC9480]
 gi|327548130|gb|EGF32846.1| Excinuclease ABC subunit B [Oxalobacteraceae bacterium IMCC9480]
          Length = 697

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/680 (54%), Positives = 491/680 (72%), Gaps = 8/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK ITF    FQ+   + P+GDQP AIA+L++GI      Q LLGVTGSGKT+TMA V
Sbjct: 12  DESKIITFPDSPFQLLQPFEPAGDQPTAIAKLVEGIEDGLSYQTLLGVTGSGKTYTMANV 71

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  M RPAI+ APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 72  IARMGRPAIIFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR S T+SL+ER D I+V++VS IYGIG+   Y QMI+ L+  D V Q+++
Sbjct: 132 SSINEHIEQMRLSCTKSLMERRDVIIVATVSAIYGIGNPNEYHQMILTLRAKDKVSQRDV 191

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L++ QY R +I   RGTFRV GD+I+IFP+   ++A R+ MF ++IE I  F PLTG
Sbjct: 192 IARLIQMQYTRNEIDFGRGTFRVRGDTIDIFPAEHAELAVRLEMFDDEIESIQLFDPLTG 251

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y  SHYVTPR T+  A++ IKEEL+ RL    KE +L+E QR+EQR  +
Sbjct: 252 RVRQKIPRFTVYPGSHYVTPRATVLRAIETIKEELRDRLEFFRKENKLIEEQRIEQRTRF 311

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEM++  G  + IENYSR+L+G   GEPPPTL +Y+P D+L+F+DESHV + Q+SGMY 
Sbjct: 312 DLEMMQEIGFTKGIENYSRHLSGAKAGEPPPTLIDYLPPDALMFLDESHVLLGQLSGMYN 371

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L +YGFRLPS +DNRPLRF+E+      T+ VSATP  +E     G +VEQ+
Sbjct: 372 GDRSRKTNLVDYGFRLPSALDNRPLRFDEFEGKMRQTVFVSATPAEYEKTHA-GQVVEQV 430

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A TQV+D+  EI L   Q  R+L+T LTKRM+E LTE+L +  ++
Sbjct: 431 VRPTGLVDPAIEVRPASTQVDDLMGEIQLRVAQNERVLVTTLTKRMSEQLTEFLSDNGVK 490

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+
Sbjct: 491 VRYLHSDIDTVERVEILRDLRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 550

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARN+N K ILY D +T S++ AIDET RRR KQ+E N  +NI P  +K++
Sbjct: 551 RSLIQTIGRAARNLNGKAILYGDKVTDSMRRAIDETERRRNKQVEFNLANNITPIGIKKQ 610

Query: 729 IMEVIDPILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           I ++ID +     A   + +    A+  S+S+K+    +K L K M   A NL FE+AA+
Sbjct: 611 IKDLIDGVYSPQEAREELQVAQETAKYESMSEKQISKEIKRLEKLMLDHAKNLEFEKAAQ 670

Query: 786 IRDEIKRLKSSPYFQGLDDS 805
           +RD+++ LK   +  G  D+
Sbjct: 671 VRDQLRILKEQLFGAGGSDN 690


>gi|86157701|ref|YP_464486.1| excinuclease ABC subunit B [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774212|gb|ABC81049.1| Excinuclease ABC subunit B [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 699

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/662 (54%), Positives = 477/662 (72%), Gaps = 17/662 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q++Y P+GDQP AIA+L  G+   E+ Q+LLGVTGSGKTFT+A V+  ++RP +V+A
Sbjct: 3   FEIQSEYQPTGDQPRAIAELTDGLRRGERHQVLLGVTGSGKTFTVANVVAEVKRPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK  FP  AV YFVSYYDYYQPEAYVP TDTYIEK+SSIN++IDRMRH
Sbjct: 63  HNKTLAAQLYAEFKELFPTAAVHYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDRMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL RND ++V+SVSCIYG+G+ E+Y  ++ +L+ G    +   + SL+  QY+R 
Sbjct: 123 AATHALLTRNDVLIVASVSCIYGLGTAEAYHGLLQRLERGQEFLRDRFIRSLIDIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+IE+FP + ED A R+  FG+ +E I EF PL G  +  ++ + I+
Sbjct: 183 DLDFHRGTFRVRGDTIEVFPPYEEDRAVRIEFFGDVVESIHEFDPLRGVTLAELDKVAIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHYV+       A+  ++EEL+ RL EL+   +L+EAQRLEQR  +DLEMLE  G C 
Sbjct: 243 PNSHYVSAPEVRARAISGVREELRERLGELKAANKLVEAQRLEQRTMFDLEMLEQMGFCP 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  G+PPP L +Y P+D LL +DESH T+PQI  MYRGD  RK TL E+
Sbjct: 303 GIENYSRWLSGRKAGDPPPCLLDYFPKDFLLVIDESHQTVPQIGSMYRGDRSRKETLVEF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L    + VSATP ++ELEQ QG++VEQ+IRPTGLVDP +E
Sbjct: 363 GFRLPSALDNRPLKFEEFQALVKQAVYVSATPAAYELEQAQGVVVEQLIRPTGLVDPQIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   +QV+D+  E+   A+ G R+L+T LTKRMAEDLTEY  +  +R RY+HS++ TLE
Sbjct: 423 VRPVGSQVDDLLGEVRKRAEAGERVLVTTLTKRMAEDLTEYFTDVGVRCRYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  +IRDLR G+FDVL+GINLLREGLDIPE  LVA+LDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RSAVIRDLRRGEFDVLIGINLLREGLDIPEVSLVAVLDADKEGFLRSSVSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +V+LYAD IT S++ AIDETTRRRE Q  +N +H I P +VK  I          D
Sbjct: 543 NVNGRVLLYADAITASMRQAIDETTRRREIQERYNAEHGITPTTVKRNI---------SD 593

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                +  D   + L+ ++G  +        + +L ++M  AA  L FE+AA++RD ++ 
Sbjct: 594 LGMAVVEADYVTVPLAAEEGAEYRPEQLPEIVAALEREMQDAARALEFEKAAQLRDRVQA 653

Query: 793 LK 794
           LK
Sbjct: 654 LK 655


>gi|311694263|gb|ADP97136.1| excinuclease ABC subunit B [marine bacterium HP15]
          Length = 686

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/673 (55%), Positives = 481/673 (71%), Gaps = 13/673 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + + P+GDQP AI  L+ GI S    Q LLGVTGSGKTFT+A VI+ +QRP I+MA
Sbjct: 15  FQVDSPFQPAGDQPKAIEGLMDGIQSGLAHQTLLGVTGSGKTFTIANVIQQVQRPTIIMA 74

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR 
Sbjct: 75  HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEHIEQMRL 134

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G  +SY +M++ L  GD ++Q+ +L  L + QY R 
Sbjct: 135 SATKALLERPDAIIVATVSSIYGLGDPQSYLKMMLHLDRGDQIDQRYILRRLAELQYTRN 194

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   R  +RV GD I++FP+  E  A R+ +F +++E +S F PLTG+ +R V  + IY
Sbjct: 195 DIEFHRANYRVRGDVIDVFPAESEKEAIRIELFDDEVENLSYFDPLTGEVLRRVPRVTIY 254

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR T+  A+++IK EL  RL +L    RL+EAQRLE+R  YD+EM+   G C 
Sbjct: 255 PKSHYVTPRQTVLDAVEHIKVELDERLQQLRDNNRLVEAQRLEERTRYDIEMMLELGYCN 314

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGE PPTLF+Y+P ++LL VDESHVTIPQI  MY+GD  RK TL EY
Sbjct: 315 GIENYSRYLSGRRPGEAPPTLFDYLPPNALLVVDESHVTIPQIGAMYKGDRSRKETLVEY 374

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEEW  + P  I VSATP ++E E   G +VEQ++RPTGL+DP +E
Sbjct: 375 GFRLPSALDNRPMKFEEWERIAPQMIFVSATPSTYEAEHA-GQVVEQVVRPTGLLDPEIE 433

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI+   +   R+L+T LTKRMAEDLT++L E +I+VRY+HS++ T+E
Sbjct: 434 VRPASTQVDDLLSEIHTRVKVKERVLVTTLTKRMAEDLTDFLMEHDIKVRYLHSDIDTVE 493

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 494 RVEIIRDLRRGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 553

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ K ILY D IT S+Q AIDET RRR KQ  HN +  I PQ + +KI ++++      
Sbjct: 554 NVHGKAILYGDRITGSMQRAIDETERRRAKQEAHNLEQGITPQGLNKKIADIMEGAGGGG 613

Query: 741 AATTNISIDAQQLSLSKKKGKA------------HLKSLRKQMHLAADNLNFEEAARIRD 788
                     Q+ +   ++ +A             +  L  +M+ AA  L+FE AAR+RD
Sbjct: 614 RGRRKAERPGQKAAEEAEQYRAKAGNRSPEEVLKEVSRLEDEMYKAASELDFETAARLRD 673

Query: 789 EIKRLKSSPYFQG 801
           +I  LK +    G
Sbjct: 674 DIAELKEAALRTG 686


>gi|30248789|ref|NP_840859.1| excinuclease ABC subunit B [Nitrosomonas europaea ATCC 19718]
 gi|81838758|sp|Q82WA9|UVRB_NITEU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|30180384|emb|CAD84696.1| Helicase subunit of the DNA excision repair complex [Nitrosomonas
           europaea ATCC 19718]
          Length = 695

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/673 (55%), Positives = 488/673 (72%), Gaps = 8/673 (1%)

Query: 138 ITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
           ITF    +++   + P+GDQP AI  L++GI S    Q LLGVTGSGKTFT+A +I  + 
Sbjct: 3   ITFPGSPYKLNQAFQPAGDQPEAIRILVEGIESGLSFQTLLGVTGSGKTFTIANMIARLG 62

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPAI+MAPNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE
Sbjct: 63  RPAIIMAPNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINE 122

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
            I++MR SAT+SLLER D I+V++VSCIYGIG    Y  MI+ ++  + + Q++++  L 
Sbjct: 123 HIEQMRLSATKSLLEREDAIIVATVSCIYGIGDPVDYHGMILHVREHEKISQRDIIQRLT 182

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY+R +    RGTFRV GD +++FP+   + A R+S+F +++E ++ F PLTGQ  + 
Sbjct: 183 GMQYQRNEFEFARGTFRVRGDVLDVFPAENSETALRISLFDDEVESMTLFDPLTGQTRQK 242

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           V    +Y +SHYVTPR T   A++ IK EL  RL    +  +L+EAQRLEQR  +DLEML
Sbjct: 243 VSRYTVYPSSHYVTPRSTTLRAIETIKTELTGRLNYFHENHKLVEAQRLEQRTRFDLEML 302

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
              G C+ IENYSR+L+GR PG+PPPTL +Y+P+++L+ +DESHVT+PQI GMY+GD  R
Sbjct: 303 NELGFCKGIENYSRHLSGRQPGDPPPTLIDYLPDNALMIIDESHVTVPQIGGMYKGDRSR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K  L  YGFRLPS +DNRPLRFEE+  L P TI VSATP  +E+++  G I EQ++RPTG
Sbjct: 363 KENLVAYGFRLPSALDNRPLRFEEFEKLMPQTIFVSATPADYEIQRS-GQIAEQVVRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           LVDP + IR   TQV+D+  E++L A Q  R+L+T LTKRMAEDLT+Y  +  IRVRY+H
Sbjct: 422 LVDPVIIIRPVTTQVDDLMSEVSLRAAQNERVLVTTLTKRMAEDLTDYFSDHGIRVRYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ T+ER+EIIRDLRLGKFDVLVGINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQ
Sbjct: 482 SDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVGILDADKEGFLRSERSLIQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAAR+VN  VILYAD IT S++ AIDET RRR KQ   N+++NI P+ V ++I ++I
Sbjct: 542 TMGRAARHVNGTVILYADKITNSMRRAIDETERRRNKQKLFNQQNNITPRGVNKRIKDLI 601

Query: 734 DPILLEDAATTN---ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           D +   + A  +     I A+  ++ + +    ++ L K M  AA N+ FE+AA+ RDEI
Sbjct: 602 DGVYDSENAAEHRKVAQIQARYAAMDEAQLAKEIQRLEKSMLEAARNMEFEQAAQYRDEI 661

Query: 791 KRLKSSPYFQGLD 803
           K L+S  +   +D
Sbjct: 662 KNLRSKLFIGIID 674


>gi|17545730|ref|NP_519132.1| excinuclease ABC subunit B [Ralstonia solanacearum GMI1000]
 gi|21542280|sp|Q8Y0N2|UVRB_RALSO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|17428024|emb|CAD14713.1| probable uvrabc system protein b (uvrb protein) (excinuclease abc
           subunit b) [Ralstonia solanacearum GMI1000]
          Length = 696

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/673 (55%), Positives = 491/673 (72%), Gaps = 7/673 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y P+GDQP AI QL++GI      Q LLGVTGSGKT+TMA V
Sbjct: 12  DESKFVTFDGSPFQLYQPYPPAGDQPEAIRQLVEGIGDGLSYQTLLGVTGSGKTYTMANV 71

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I    RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 72  IAQAGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+NE I++MR SAT+SLLER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 132 SSVNEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPTEYHQMILTLRTGDKISQRDV 191

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+++IFP+   ++A R+ +F ++++ +  F PLTG
Sbjct: 192 IARLIAMQYTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDEVDSLQLFDPLTG 251

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A+  IK EL+ RL    +E +L+EAQRLEQR  +
Sbjct: 252 RVRQKILRFTVYPSSHYVTPRETVLRAIGTIKAELRERLDFFYQENKLVEAQRLEQRTRF 311

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHV I Q++GMY 
Sbjct: 312 DLEMLQELGFCKGIENYSRHLSGAQPGEPPPTLVDYLPSDALMFLDESHVLIGQLNGMYN 371

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL+ YGFRLPS +DNRPL+F E+       + VSATP  +E ++    +VEQ+
Sbjct: 372 GDRARKETLSAYGFRLPSALDNRPLKFAEFEGKMRQVVFVSATPADYEKQRAGDEVVEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP + +R A TQV+D+  EI+   + G R+L+T LTKRMAE LTE+L E  ++
Sbjct: 432 VRPTGLVDPIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQLTEFLSENGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN   ILY D IT+S++ AI ET RRR KQ+ HN+ H I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGTAILYGDRITESMKKAIGETERRRAKQIAHNEAHGITPRGVVKR 611

Query: 729 IMEVIDPIL-LEDA-ATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           I ++ID +  ++DA A    + DA +   +S+K+    +K L KQM   A NL FE+AA 
Sbjct: 612 IKDIIDGVYNVDDARAELKAAQDAAKYEDMSEKQVGKEIKRLEKQMLDHAKNLEFEKAAA 671

Query: 786 IRDEIKRLKSSPY 798
           +RD++ +LKS  +
Sbjct: 672 VRDQLAKLKSQVF 684


>gi|42520676|ref|NP_966591.1| excinuclease ABC subunit B [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410416|gb|AAS14525.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 635

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/647 (56%), Positives = 470/647 (72%), Gaps = 17/647 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI  L+ G++S ++ Q+LLGVTGSGKTFTMA VI    RPA++MA
Sbjct: 3   FQITTHFQPAGDQPQAIDSLIAGLNSNKRDQVLLGVTGSGKTFTMANVIARTNRPALIMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K  FPHNAVEYF+SYYDYYQPEAY+P+TDTYIEK+S+INE+I+ +R+
Sbjct: 63  HNKTLAAQLYEEMKGLFPHNAVEYFISYYDYYQPEAYLPQTDTYIEKDSAINERIEMLRY 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S   SLLER D IVV+SVSCIYG+GS ESY  MI+ L +G+ +   + LS+L   QYKR 
Sbjct: 123 STVCSLLERRDTIVVASVSCIYGLGSPESYRSMIIPLSVGNKIRINDFLSNLTDLQYKRS 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD ++IFPSH E+ AWR+S+FG++IEEISE   +TG   + V  I I+
Sbjct: 183 DARFERGYFRVRGDIVDIFPSHYENKAWRLSLFGDEIEEISEVDAITGNVTKGVNKITIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NS+Y+TPR  L  A++ +K+EL  RL     + +++EA+RLEQR  +D+EM+ TTG C+
Sbjct: 243 PNSYYITPREALLQAIELVKKELHERLDYYYSQNKIVEAKRLEQRTNFDIEMMRTTGICK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL G   G+PPPTLFEY+P+D +LFVDESHVT+PQ+  MY G+  RK  L +Y
Sbjct: 303 GIENYSRYLYGMEAGDPPPTLFEYLPKDVILFVDESHVTVPQVGAMYSGNEARKKKLIDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEEW  +RP T+ +SATPG +EL +   + +EQ+IRPTGL DP   
Sbjct: 363 GFRLPSAFDNRPLKFEEWEGVRPQTVYISATPGKYELAKTSNVFIEQVIRPTGLADPICI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++   +Q++DV  E  +   +G  +L+T LTK+MAE+L EY+ E N+RV Y+HS++  LE
Sbjct: 423 VKPIESQIDDVIHEAQVTIGKGFCVLITTLTKKMAENLAEYMSEMNMRVSYLHSDIAALE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII  LR  + DVLVG+NLLREGLDIPECGLVAILDADK+GFLRS+TSLIQTIGRAAR
Sbjct: 483 RIEIIYKLRSKEIDVLVGVNLLREGLDIPECGLVAILDADKQGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VILYAD IT S+  A+ ET RRR+KQ EHN  HNI P++       +I P     
Sbjct: 543 NAEGRVILYADKITGSLDRALRETERRRKKQEEHNILHNIVPKT-------IIKP----- 590

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                IS   Q+ ++++ K   +   LRKQM   A+NL FEEAARI+
Sbjct: 591 -----ISNTLQERAIAEPKVNTNKDDLRKQMIEHAENLEFEEAARIK 632


>gi|163802842|ref|ZP_02196731.1| excinuclease ABC subunit B [Vibrio sp. AND4]
 gi|159173382|gb|EDP58205.1| excinuclease ABC subunit B [Vibrio sp. AND4]
          Length = 676

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/669 (54%), Positives = 492/669 (73%), Gaps = 17/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +Q+ ++Y P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRPAI++A
Sbjct: 5   YQLVSEYQPAGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+N+VEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNSVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  ESY +M++ L  GD ++Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLKMMLHLCRGDVIDQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  E  A R+ MF ++++ IS F PLTG  K R++    I
Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESEQDAVRIEMFDDEVDCISVFDPLTGVVKQRDLPRYTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK+EL +R  +L +  +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILDAIENIKDELDVRKKQLLENNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P+D LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRP++FEE+  + P TI VSATPG++ELE+  G I +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPMKFEEFEAVSPQTIFVSATPGNYELEKSAGEIADQVVRPTGLLDPEL 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + + +  R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ T+
Sbjct: 425 EVRPVTTQVDDLLSEIRIRSVKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  + ILYAD+ITKS++ A+DET RRREKQ  HN    I PQ++K  I ++++   L 
Sbjct: 545 RNIEGRAILYADSITKSMKKAMDETDRRREKQRAHNVAIGIEPQALKRNIKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D   +    +  Q+ LSK             ++ +  +  L   M+  A +L FE AA+ 
Sbjct: 602 DITKSKRQRNTNQVPLSKVAEPSQAYEALSPQQLEREISRLEAAMYQHAQDLEFELAAQK 661

Query: 787 RDEIKRLKS 795
           RD+I++L++
Sbjct: 662 RDQIEQLRT 670


>gi|172061170|ref|YP_001808822.1| excinuclease ABC subunit B [Burkholderia ambifaria MC40-6]
 gi|171993687|gb|ACB64606.1| excinuclease ABC, B subunit [Burkholderia ambifaria MC40-6]
          Length = 696

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/680 (54%), Positives = 491/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  
Sbjct: 13  DESKFVTFEGSPFQLYQPYPPAGDQPTAIETLVEGVGDGLAFQTLLGVTGSGKTFTMANT 72

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 73  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y +MI+ L+ GD + Q+++
Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHKMILTLRTGDKLGQRDV 192

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 193 IARLIAMQYSRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IKEEL+ RL    ++G+L+EAQRLEQR  +
Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHRDGKLVEAQRLEQRTRF 312

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ+
Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A +QV+DV  EIN     G R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLTEINARVNAGERVLITVLTKRMAEQLTEFLADHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYADT+T+S++ AI ET RRR KQ+ HN+K  I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAHNEKMGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
             RD++  L+   +   + D
Sbjct: 671 ATRDQLALLRERVFGANVGD 690


>gi|121587374|ref|ZP_01677144.1| excinuclease ABC subunit B [Vibrio cholerae 2740-80]
 gi|121728166|ref|ZP_01681201.1| excinuclease ABC subunit B [Vibrio cholerae V52]
 gi|147673403|ref|YP_001216490.1| excinuclease ABC subunit B [Vibrio cholerae O395]
 gi|153215064|ref|ZP_01949781.1| excinuclease ABC subunit B [Vibrio cholerae 1587]
 gi|153819299|ref|ZP_01971966.1| excinuclease ABC subunit B [Vibrio cholerae NCTC 8457]
 gi|153823436|ref|ZP_01976103.1| excinuclease ABC subunit B [Vibrio cholerae B33]
 gi|153829535|ref|ZP_01982202.1| excinuclease ABC subunit B [Vibrio cholerae 623-39]
 gi|227081192|ref|YP_002809743.1| excinuclease ABC subunit B [Vibrio cholerae M66-2]
 gi|229505383|ref|ZP_04394893.1| excinuclease ABC subunit B [Vibrio cholerae BX 330286]
 gi|229510947|ref|ZP_04400426.1| excinuclease ABC subunit B [Vibrio cholerae B33]
 gi|229518068|ref|ZP_04407512.1| excinuclease ABC subunit B [Vibrio cholerae RC9]
 gi|229529888|ref|ZP_04419278.1| excinuclease ABC subunit B [Vibrio cholerae 12129(1)]
 gi|229608402|ref|YP_002879050.1| excinuclease ABC subunit B [Vibrio cholerae MJ-1236]
 gi|254848149|ref|ZP_05237499.1| excinuclease ABC subunit B [Vibrio cholerae MO10]
 gi|255745443|ref|ZP_05419391.1| excinuclease ABC subunit B [Vibrio cholera CIRS 101]
 gi|262151305|ref|ZP_06028440.1| excinuclease ABC subunit B [Vibrio cholerae INDRE 91/1]
 gi|262167225|ref|ZP_06034937.1| excinuclease ABC subunit B [Vibrio cholerae RC27]
 gi|298498869|ref|ZP_07008676.1| excinuclease ABC, B subunit [Vibrio cholerae MAK 757]
 gi|121548377|gb|EAX58439.1| excinuclease ABC subunit B [Vibrio cholerae 2740-80]
 gi|121629563|gb|EAX61986.1| excinuclease ABC subunit B [Vibrio cholerae V52]
 gi|124114927|gb|EAY33747.1| excinuclease ABC subunit B [Vibrio cholerae 1587]
 gi|126510159|gb|EAZ72753.1| excinuclease ABC subunit B [Vibrio cholerae NCTC 8457]
 gi|126519045|gb|EAZ76268.1| excinuclease ABC subunit B [Vibrio cholerae B33]
 gi|146315286|gb|ABQ19825.1| excinuclease ABC subunit B [Vibrio cholerae O395]
 gi|148874995|gb|EDL73130.1| excinuclease ABC subunit B [Vibrio cholerae 623-39]
 gi|227009080|gb|ACP05292.1| excinuclease ABC subunit B [Vibrio cholerae M66-2]
 gi|227012835|gb|ACP09045.1| excinuclease ABC subunit B [Vibrio cholerae O395]
 gi|229333662|gb|EEN99148.1| excinuclease ABC subunit B [Vibrio cholerae 12129(1)]
 gi|229344783|gb|EEO09757.1| excinuclease ABC subunit B [Vibrio cholerae RC9]
 gi|229350912|gb|EEO15853.1| excinuclease ABC subunit B [Vibrio cholerae B33]
 gi|229357606|gb|EEO22523.1| excinuclease ABC subunit B [Vibrio cholerae BX 330286]
 gi|229371057|gb|ACQ61480.1| excinuclease ABC subunit B [Vibrio cholerae MJ-1236]
 gi|254843854|gb|EET22268.1| excinuclease ABC subunit B [Vibrio cholerae MO10]
 gi|255736518|gb|EET91915.1| excinuclease ABC subunit B [Vibrio cholera CIRS 101]
 gi|262024369|gb|EEY43058.1| excinuclease ABC subunit B [Vibrio cholerae RC27]
 gi|262030921|gb|EEY49550.1| excinuclease ABC subunit B [Vibrio cholerae INDRE 91/1]
 gi|297543202|gb|EFH79252.1| excinuclease ABC, B subunit [Vibrio cholerae MAK 757]
 gi|327483735|gb|AEA78142.1| Excinuclease ABC subunit B [Vibrio cholerae LMA3894-4]
          Length = 676

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/668 (55%), Positives = 483/668 (72%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF ++IE IS F PLTG    R++    I
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATP  +EL +  G + EQ++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++  I PQ +K  + ++++   L 
Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D A +    +++ + L+K             ++ +  +  L   M+  A NL FE AA+ 
Sbjct: 602 DIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661

Query: 787 RDEIKRLK 794
           RDEI +L+
Sbjct: 662 RDEIHQLR 669


>gi|299066976|emb|CBJ38171.1| ATP-dependent DNA excision repair enzyme, DNA damage recognition
           component [Ralstonia solanacearum CMR15]
          Length = 696

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/673 (54%), Positives = 491/673 (72%), Gaps = 7/673 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y P+GDQP AI QL++GI      Q LLGVTGSGKT+TMA V
Sbjct: 12  DESKFVTFDGSPFQLYQPYLPAGDQPEAIRQLVEGIGDGLSYQTLLGVTGSGKTYTMANV 71

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I    RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 72  IAQSGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 132 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPTEYHQMILTLRTGDKISQRDV 191

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+++IFP+   ++A R+ +F ++++ +  F PLTG
Sbjct: 192 IARLIAMQYTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDEVDSLQLFDPLTG 251

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A+  IK EL+ RL    +E +L+EAQRLEQR  +
Sbjct: 252 RVRQKIPRFTVYPSSHYVTPRETVLRAIGTIKAELRERLDFFYQENKLVEAQRLEQRTRF 311

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHV I Q++GMY 
Sbjct: 312 DLEMLQELGFCKGIENYSRHLSGAQPGEPPPTLVDYLPSDALMFLDESHVLIGQLNGMYN 371

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL+ YGFRLPS +DNRPL+F E+       + VSATP  +E ++    +VEQ+
Sbjct: 372 GDRARKETLSAYGFRLPSALDNRPLKFAEFEGKMRQVVFVSATPADYEKQRAGDEVVEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP + +R A TQV+D+  EI+   + G R+L+T LTKRMAE LTE+L E  ++
Sbjct: 432 VRPTGLVDPIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQLTEFLSENGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN   ILY D IT+S++ AI ET RRR KQ+ HN+ H I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGTAILYGDRITESMKKAIGETERRRAKQMAHNEAHGITPRGVVKR 611

Query: 729 IMEVIDPIL-LEDA-ATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           I ++ID +  ++DA A    + DA +   +S+K+    +K L KQM   A NL FE+AA 
Sbjct: 612 IKDIIDGVYNVDDARAELKAAQDAAKYEDMSEKQVGKEIKRLEKQMLDHAKNLEFEKAAS 671

Query: 786 IRDEIKRLKSSPY 798
           +RD++ +LKS  +
Sbjct: 672 VRDQLAKLKSQVF 684


>gi|319942812|ref|ZP_08017113.1| UvrABC system protein B [Sutterella wadsworthensis 3_1_45B]
 gi|319803579|gb|EFW00540.1| UvrABC system protein B [Sutterella wadsworthensis 3_1_45B]
          Length = 690

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/676 (54%), Positives = 491/676 (72%), Gaps = 3/676 (0%)

Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183
            P  + S+  ++   + F +   + P+GDQPAAI  L  GI +    Q LLGVTGSGKTF
Sbjct: 11  VPPFAASMPTYAYPNSPFVLHAPFPPAGDQPAAIDALCAGIENGLMNQTLLGVTGSGKTF 70

Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243
           TMA +I     PAI+ APNK LAAQ YSE ++FFP NAVEYFVSYYD+YQPEAYVP  D 
Sbjct: 71  TMANIIAREGVPAIIFAPNKTLAAQTYSEMRDFFPENAVEYFVSYYDFYQPEAYVPARDL 130

Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303
           +IEK++++N+ I++MR +AT+S+LER D I+V++VS IYGIGS ESY+ M + L+ GD  
Sbjct: 131 FIEKDAAVNDHIEQMRLAATKSILERRDTIIVATVSAIYGIGSPESYTTMRMILRQGDRR 190

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            Q++L++ LVK QY R D+   RGTFRV GD+I+IFP+   + A RV +F ++++ +S F
Sbjct: 191 SQRQLINQLVKIQYTRSDMEFNRGTFRVRGDTIDIFPAEHAETAVRVELFDDEVDTVSLF 250

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
            PLTG+ ++ V+   +Y  SHYVTPR  +  A+  IK ELK+R  EL K+  L+EAQRLE
Sbjct: 251 DPLTGKVVQKVQRFVVYPASHYVTPRDEIVRAITSIKAELKVREAELLKDNLLVEAQRLE 310

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
           QR  +DLEML+  G C+ IENYSR+LTG  PG  PP L +Y+P D+L+F DESHV + Q+
Sbjct: 311 QRTNFDLEMLDQVGFCKGIENYSRHLTGLAPGAAPPCLIDYLPADALMFFDESHVMMGQL 370

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
            GMYRGD  RK TL  YGFRLPS +DNRPLRF+E+      +I VSATP  +ELE+CQG 
Sbjct: 371 GGMYRGDRARKETLVRYGFRLPSALDNRPLRFDEFEAKMRQSIFVSATPAEYELERCQGE 430

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
           +VEQ++RPTGLVDP VE+R A TQV+D+  EI+   +QG R+L+T LTK+MAEDLT++L 
Sbjct: 431 VVEQVVRPTGLVDPAVEVRPATTQVDDLLSEISETVKQGERVLVTTLTKKMAEDLTDFLS 490

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           E  ++VRY+HS++ T+ER+EIIRDLR GKFDVLVGINLLREGLDIPE  LVAILDADKEG
Sbjct: 491 EEGVKVRYLHSDIDTVERVEIIRDLRAGKFDVLVGINLLREGLDIPEVSLVAILDADKEG 550

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           FLRS  SLIQTIGRAARN++ + ILY D +T S++ A++ET RRR+KQ + N++H I PQ
Sbjct: 551 FLRSTRSLIQTIGRAARNLHGRAILYGDKMTDSMKAALNETNRRRQKQEDFNREHGIVPQ 610

Query: 724 SVKEKIMEVIDPILL-EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
            VK+ + E+ID +    D A  + + DA  + + +K     L+ L ++M   A NL+FE+
Sbjct: 611 GVKKAVREIIDGVYRGPDVAPESSASDA--VPMDEKTLSKRLRELEEEMMSYAKNLDFEK 668

Query: 783 AARIRDEIKRLKSSPY 798
           AAR+R+E+  L+   +
Sbjct: 669 AARVREELMALRKQAF 684


>gi|297578626|ref|ZP_06940554.1| excinuclease ABC subunit B [Vibrio cholerae RC385]
 gi|297536220|gb|EFH75053.1| excinuclease ABC subunit B [Vibrio cholerae RC385]
          Length = 676

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/668 (55%), Positives = 483/668 (72%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF ++IE IS F PLTG    R++    I
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATP  +EL +  G + EQ++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GRAA
Sbjct: 485 ERVEIIRDLRLGIFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++  I PQ +K  + ++++   L 
Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D A +    +++ + L+K             ++ +  +  L   M+  A NL FE AA+ 
Sbjct: 602 DIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661

Query: 787 RDEIKRLK 794
           RDEI +L+
Sbjct: 662 RDEIHQLR 669


>gi|153800908|ref|ZP_01955494.1| excinuclease ABC subunit B [Vibrio cholerae MZO-3]
 gi|229515404|ref|ZP_04404863.1| excinuclease ABC subunit B [Vibrio cholerae TMA 21]
 gi|229525631|ref|ZP_04415036.1| excinuclease ABC subunit B [Vibrio cholerae bv. albensis VL426]
 gi|124123499|gb|EAY42242.1| excinuclease ABC subunit B [Vibrio cholerae MZO-3]
 gi|229339212|gb|EEO04229.1| excinuclease ABC subunit B [Vibrio cholerae bv. albensis VL426]
 gi|229347173|gb|EEO12133.1| excinuclease ABC subunit B [Vibrio cholerae TMA 21]
          Length = 676

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/668 (55%), Positives = 483/668 (72%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG    R++    I
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLARFTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATP  +EL +  G + EQ++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++  I PQ +K  + ++++   L 
Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D A +    +++ + L+K             ++ +  +  L   M+  A NL FE AA+ 
Sbjct: 602 DIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661

Query: 787 RDEIKRLK 794
           RDEI +L+
Sbjct: 662 RDEIHQLR 669


>gi|308049943|ref|YP_003913509.1| Excinuclease ABC subunit B [Ferrimonas balearica DSM 9799]
 gi|307632133|gb|ADN76435.1| Excinuclease ABC subunit B [Ferrimonas balearica DSM 9799]
          Length = 665

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/662 (55%), Positives = 481/662 (72%), Gaps = 15/662 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA+LL G+ +    Q LLGVTGSGKTFTMA V+  + RP I++A
Sbjct: 5   FKLHSQFQPAGDQPGAIAKLLDGLDAGLAHQTLLGVTGSGKTFTMANVVAELNRPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP N+VEYFVSYYDYYQPEAYVP TDT+IEK++SIN  I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPENSVEYFVSYYDYYQPEAYVPSTDTFIEKDASINAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++V+SVS IYG+G  ++Y  M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALMERRDVVLVASVSAIYGLGDPKAYMAMLLHLRQGDIMNQRDILKRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV G+ I+IFP+  E  A R+ +F  +IE I+ F PLTG + R V    +Y
Sbjct: 185 DMAFERGTFRVRGEVIDIFPADSEKEAVRIELFDEEIERITLFDPLTGAQSREVARYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR T+  A+  IK ELK+R  +L    +L+EAQR+++R  +D+EM+   G C 
Sbjct: 245 PKTHYVTPRETIIGAIDKIKAELKVRHQQLLDNNKLIEAQRIKERTQFDVEMMLELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTL +Y+P+D LL +DESHVT+PQ+  MY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRAPGEPPPTLLDYLPDDGLLIIDESHVTVPQLGAMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+FEE+  + P T+ VSATP  +EL++  G +VEQ++RPTGL+DP +E
Sbjct: 365 GFRLPSAMDNRPLKFEEFEAIAPQTVFVSATPAKYELDKSAGDVVEQVVRPTGLLDPEIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL + ++RVRY+HS+V T+E
Sbjct: 425 VRPVATQVDDLLSEIRIRADKNERVLVTTLTKRMAEDLTEYLEDHDVRVRYLHSDVDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQT+GRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTMGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           NVN K ILYAD IT S++ AI ET RRR KQ  +N +H I P+ + +KI +V+D      
Sbjct: 545 NVNGKAILYADRITGSMERAIGETQRRRAKQEAYNAEHGIVPKGLVKKITDVMDVGGKRR 604

Query: 735 PILLEDAAT--TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           P   + A T  T   +D  +L+ S       +  L K M+  A NL FE+AA +RDEI  
Sbjct: 605 PGERKVAETKPTYQPVDPAKLAKS-------IAELEKTMYEHARNLEFEKAAALRDEITA 657

Query: 793 LK 794
           L+
Sbjct: 658 LR 659


>gi|254291758|ref|ZP_04962544.1| excinuclease ABC subunit B [Vibrio cholerae AM-19226]
 gi|150422351|gb|EDN14312.1| excinuclease ABC subunit B [Vibrio cholerae AM-19226]
          Length = 676

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/668 (55%), Positives = 483/668 (72%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG    R++    I
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLARFTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATP  +EL +  G + EQ++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGLKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++  I PQ +K  + ++++   L 
Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D A +    +++ + L+K             ++ +  +  L   M+  A NL FE AA+ 
Sbjct: 602 DIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661

Query: 787 RDEIKRLK 794
           RDEI +L+
Sbjct: 662 RDEIHQLR 669


>gi|326317579|ref|YP_004235251.1| excinuclease ABC subunit B [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374415|gb|ADX46684.1| excinuclease ABC, B subunit [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 696

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/664 (54%), Positives = 486/664 (73%), Gaps = 7/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQP AI QL++G+   E  Q LLGVTGSGKTFTMA VI  + RPAIV A
Sbjct: 25  FELYQPYPPAGDQPVAIDQLVEGVQDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIVFA 84

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR 
Sbjct: 85  PNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 144

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S+LER D ++V++VS IYGIG+ E Y++M   +++GD + Q++++S L++ QY R 
Sbjct: 145 SATKSVLERRDVVIVATVSAIYGIGAPEDYTKMRFIMRVGDEISQRDVISRLIRMQYTRN 204

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RGTFRV GD+I++FPS   ++A R+ +F ++IE +S F PLTG+  + +    IY
Sbjct: 205 EQDFARGTFRVRGDTIDVFPSEHSELAIRIELFDDEIETLSLFDPLTGRVRQKIPRFTIY 264

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR  +  A++ IK EL  RL +   EG+L+EAQRLEQR  +DLEML   G C+
Sbjct: 265 PSSHYVTPRDKVLAAVETIKLELNERLAQFVAEGKLVEAQRLEQRTRFDLEMLSEVGHCK 324

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L+G  PG+PPPTL +Y+P D+L+F+DESH  I Q++ M+ GD  RK TL EY
Sbjct: 325 GIENYTRHLSGAAPGDPPPTLTDYLPPDALMFLDESHQMIGQLAAMFNGDRARKTTLVEY 384

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATP  +E +   G +V+Q++RPTGLVDP VE
Sbjct: 385 GFRLPSALDNRPLKFEEFERRMRQVVFVSATPADYE-KTHSGKVVDQVVRPTGLVDPVVE 443

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DV  EI +  ++  R+L+T LTKRMAE LT+YL +  ++VRY+HS++ T+E
Sbjct: 444 VRPATHQVDDVLQEIRVRVERSERVLITTLTKRMAEQLTDYLTDNGVKVRYLHSDIDTVE 503

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 504 RVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 563

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD IT S++ AI ET RRR KQ+ HN+   I P+S+ +++ ++ID +  E 
Sbjct: 564 NLNGQAILYADRITDSMKKAIGETERRRAKQIAHNEAQGITPRSIVKQVRDLIDGVYSEK 623

Query: 741 AATTNISID------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  ++      AQ   +S+K     +K L KQM   A NL FE+AAR+RD++ RLK
Sbjct: 624 TGREAERLEQEALRRAQVEDMSEKDVAREIKRLEKQMLDHARNLEFEQAARVRDQLNRLK 683

Query: 795 SSPY 798
           +  +
Sbjct: 684 AQAF 687


>gi|262191538|ref|ZP_06049721.1| excinuclease ABC subunit B [Vibrio cholerae CT 5369-93]
 gi|262032592|gb|EEY51147.1| excinuclease ABC subunit B [Vibrio cholerae CT 5369-93]
          Length = 676

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/668 (55%), Positives = 483/668 (72%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG    R++    I
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLARFTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATP  +EL +  G + EQ++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GRAA
Sbjct: 485 ERVEIIRDLRLGIFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++  I PQ +K  + ++++   L 
Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D A +    +++ + L+K             ++ +  +  L   M+  A NL FE AA+ 
Sbjct: 602 DIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661

Query: 787 RDEIKRLK 794
           RDEI +L+
Sbjct: 662 RDEIHQLR 669


>gi|114331080|ref|YP_747302.1| excinuclease ABC subunit B [Nitrosomonas eutropha C91]
 gi|114308094|gb|ABI59337.1| Excinuclease ABC subunit B [Nitrosomonas eutropha C91]
          Length = 699

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/673 (55%), Positives = 487/673 (72%), Gaps = 8/673 (1%)

Query: 138 ITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
           ITF    +++   + P+GDQP AI +L+ GI S    Q LLGVTGSGKTFT+A +I  + 
Sbjct: 3   ITFPDSPYKLNQAFQPAGDQPDAIRKLVDGIESGLSFQTLLGVTGSGKTFTIANMIAQLG 62

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPAI+MAPNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE
Sbjct: 63  RPAIIMAPNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINE 122

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
            I++MR SAT+SLLER D I+V+SVSCIYGIG    Y  MI+ ++  + + Q++++  L 
Sbjct: 123 HIEQMRLSATKSLLEREDTIIVASVSCIYGIGDPVDYHGMILHVREHEKITQRDIIQRLA 182

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY+R +    RGTFRV GD ++IFP+   + A R+S+F +++E I+ F PLTG   + 
Sbjct: 183 DMQYQRNEFEFARGTFRVRGDVLDIFPAENSETALRISLFDDEVESIALFDPLTGHTRQK 242

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           V    +Y +SHYVTPR T   A++ IK EL  RL  L +  +L+EAQRLEQR  +DLEML
Sbjct: 243 VSRYTVYPSSHYVTPRSTTLRAIETIKTELAERLNHLHENHKLVEAQRLEQRTRFDLEML 302

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
              G C+ IENYSR+L+GR PG+PPPTL +Y+P ++L+ +DESHVT+PQ+ GMY+GD  R
Sbjct: 303 NELGFCKGIENYSRHLSGRLPGDPPPTLIDYLPGNALMIIDESHVTVPQVGGMYKGDRSR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K  L  YGFRLPS +DNRPLRFEE+  L P TI VSATP  +E+ Q  G IVEQ++RPTG
Sbjct: 363 KENLVAYGFRLPSALDNRPLRFEEFEKLMPQTIFVSATPADYEI-QHSGQIVEQVVRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           LVDP + IR   TQV+D+  E+++  +QG R L+T LTKRMAEDLT+Y  +  IRVRY+H
Sbjct: 422 LVDPVIIIRPVATQVDDLMSEVSMRTKQGERTLITTLTKRMAEDLTDYFSDHGIRVRYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ T+ER+EIIRDLRLGKFDVLVGINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQ
Sbjct: 482 SDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDIPEASLVGILDADKEGFLRSERSLIQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAAR++N  VILYAD IT S++ AIDET RRR KQ   N++++I P+ V ++I ++I
Sbjct: 542 TMGRAARHINGTVILYADRITNSMRRAIDETERRRNKQKLFNQQNDITPRGVSKRIKDLI 601

Query: 734 DPIL-LEDAATTN--ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           D +   +DAA       I A   ++ + +    ++ L K M  AA ++ FE+AA+ RDEI
Sbjct: 602 DGVYDSKDAAEHQKVAQIQAHYAAMDETQLAKEIQRLEKAMLTAAKSMEFEQAAQYRDEI 661

Query: 791 KRLKSSPYFQGLD 803
           K LK+  +   +D
Sbjct: 662 KNLKNKLFIGMID 674


>gi|332982310|ref|YP_004463751.1| Excinuclease ABC subunit B [Mahella australiensis 50-1 BON]
 gi|332699988|gb|AEE96929.1| Excinuclease ABC subunit B [Mahella australiensis 50-1 BON]
          Length = 655

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/655 (56%), Positives = 484/655 (73%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI +L  G+ +  K Q +LGVTGSGKTFTMA +I+ +Q+P +V+A
Sbjct: 4   FNLISEYKPTGDQPQAIEKLADGVKNGLKFQTMLGVTGSGKTFTMANIIQKVQKPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL  EFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++ID+MRH
Sbjct: 64  HNKTLAAQLCGEFKEFFPNNAVEYFVSYYDYYQPEAYIPTTDTYIEKDSAINDEIDKMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D IVV+SVSCIYG+G+   Y+ M+V L+ G   ++ E+L  L++ QY+R 
Sbjct: 124 SATSALLERRDVIVVASVSCIYGLGNPNEYASMVVSLRPGMERDRDEVLHRLIEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +RGTFRV GD +EIFP+   D A RV  FG++I+ I+E   +TG+    +  + I+
Sbjct: 184 DIDFVRGTFRVHGDVVEIFPASSSDKAIRVEFFGDEIDRITEVDIVTGEITAELNHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT + TL+ A++ I+ +L +R  E + + +LLEAQR+ QR  +D+EM+   G CQ
Sbjct: 244 PASHYVTSQDTLDRAIEQIERDLAIREAEFKAQNKLLEAQRIVQRTNFDIEMMREVGYCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY  GR PG+PP TL +Y P+D L+F+DESHVT+PQI GMY GD  RK TL EY
Sbjct: 304 GIENYSRYFDGRQPGQPPYTLLDYFPDDFLIFIDESHVTLPQIRGMYAGDRSRKDTLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+  DNRPL FEE+       I VSATPG +E+E  Q  +VEQIIRPTGLVDP VE
Sbjct: 364 GFRLPAAYDNRPLTFEEFEAHINQIIFVSATPGPYEMEHSQQ-VVEQIIRPTGLVDPEVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    ++G R+L+T LTKRMAE+LT+YL E NI+VRYMHS+V T+E
Sbjct: 423 VRPVQGQIDDLIAEIKKRVEKGQRVLVTTLTKRMAENLTDYLKELNIKVRYMHSDVATIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMQIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  KVI+YAD IT S++ AIDET RRR+ Q+E+N+KH I PQ++K+ I ++I+   + +
Sbjct: 543 NVEGKVIMYADNITGSMKRAIDETNRRRQLQIEYNQKHGITPQTIKKGIRDIIEITKVAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                  +   +  L++++    +  L ++M  AA  + FE+AA  RD++  LKS
Sbjct: 603 KR----EVYTAKTKLTRQEIVDIIDELERKMKEAAAAMEFEKAAEYRDQMLELKS 653


>gi|238028103|ref|YP_002912334.1| excinuclease ABC subunit B [Burkholderia glumae BGR1]
 gi|237877297|gb|ACR29630.1| Excinuclease ABC, B subunit [Burkholderia glumae BGR1]
          Length = 696

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK + F    FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  
Sbjct: 13  DESKFVEFDGSPFQLYQPYPPAGDQPTAIDTLVEGVEDGLSFQTLLGVTGSGKTFTMANT 72

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 73  IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRNGDRIGQRDV 192

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IKEEL+ RL    +E RL+EAQRLEQR  +
Sbjct: 253 RVRQKIARFTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHRENRLVEAQRLEQRTRF 312

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYN 372

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G + EQ+
Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVSGQVAEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A +QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLAEINERVKAGERVLITVLTKRMAEQLTEFLADHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYAD +T S++ AIDET RRR KQ+ HN+K  I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGKAILYADHMTDSMRRAIDETERRRAKQIAHNEKLGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNVDEARAELK-EAQQRAKFEDMSEKQLAKEIKRLEKQMTDYAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
           + RD++  L+   +   + D
Sbjct: 671 QTRDQLALLRERVFGANVGD 690


>gi|120611112|ref|YP_970790.1| excinuclease ABC subunit B [Acidovorax citrulli AAC00-1]
 gi|120589576|gb|ABM33016.1| Excinuclease ABC subunit B [Acidovorax citrulli AAC00-1]
          Length = 696

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/664 (54%), Positives = 487/664 (73%), Gaps = 7/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQP AI QL++G+   E  Q LLGVTGSGKTFTMA VI  + RPAIV A
Sbjct: 25  FELYQPYPPAGDQPTAIDQLVEGVRDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIVFA 84

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR 
Sbjct: 85  PNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 144

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S+LER D ++V++VS IYGIG+ E Y++M   +++GD + Q++++S L++ QY R 
Sbjct: 145 SATKSVLERRDVVIVATVSAIYGIGAPEDYTKMRFIMRVGDEISQRDVISRLIRMQYTRN 204

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RGTFRV GD+I++FPS   ++A R+ +F ++IE +S F PLTG+  + +    IY
Sbjct: 205 EQDFARGTFRVRGDTIDVFPSEHSELAIRIELFDDEIETLSLFDPLTGRVRQKIPRFTIY 264

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR  +  A++ IK EL  RL +   EG+L+EAQRLEQR  +DLEML   G C+
Sbjct: 265 PSSHYVTPRDKVLAAVETIKLELNERLAQFVAEGKLVEAQRLEQRTRFDLEMLSEVGHCK 324

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L+G  PG+PPPTL +Y+P D+L+F+DESH  I Q++ M+ GD  RK TL EY
Sbjct: 325 GIENYTRHLSGAAPGDPPPTLTDYLPPDALMFLDESHQMIGQLAAMFNGDRARKTTLVEY 384

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATP  +E +   G +V+Q++RPTGLVDP VE
Sbjct: 385 GFRLPSALDNRPLKFEEFERRMRQVVFVSATPADYE-KTHSGQVVDQVVRPTGLVDPVVE 443

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DV  EI +  ++  R+L+T LTKRMAE LT+YL +  ++VRY+HS++ T+E
Sbjct: 444 VRPATHQVDDVLQEIRVRVERNERVLITTLTKRMAEQLTDYLTDNGVKVRYLHSDIDTVE 503

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 504 RVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 563

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD IT+S++ AI ET RRR KQ+ HN+   I P+S+ +++ ++ID +  E 
Sbjct: 564 NLNGQAILYADRITESMKKAIGETERRRAKQIAHNEAQGITPRSIVKQVRDLIDGVYSEK 623

Query: 741 AATTNISID------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  ++      AQ   +S+K     +K L KQM   A NL FE+AAR+RD++ RLK
Sbjct: 624 TGREAERLEQEALRRAQVEDMSEKDVAREIKRLEKQMLDHARNLEFEQAARVRDQLNRLK 683

Query: 795 SSPY 798
           +  +
Sbjct: 684 AQAF 687


>gi|237745871|ref|ZP_04576351.1| excinuclease ABC subunit B [Oxalobacter formigenes HOxBLS]
 gi|229377222|gb|EEO27313.1| excinuclease ABC subunit B [Oxalobacter formigenes HOxBLS]
          Length = 699

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/671 (54%), Positives = 487/671 (72%), Gaps = 8/671 (1%)

Query: 135 SKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
            K +TF    F++   + PSGDQP AI +L++GI      Q LLGVTGSGKT+TMA VI 
Sbjct: 14  GKVVTFPNSPFELHQPFPPSGDQPEAIDRLVEGIEDGLSYQTLLGVTGSGKTYTMANVIA 73

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            + RPAIV APNK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+
Sbjct: 74  RLGRPAIVFAPNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSA 133

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE I++MR S T+SL+ER D ++V++VS IYGIG+   Y QMI+ L+  D + Q+++++
Sbjct: 134 INEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTRDKIPQRDVIT 193

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV+ QY R DI   RGTFRV GD+I++FP+   D A R+ MF ++IE +  F PLTG+ 
Sbjct: 194 RLVQMQYTRNDIDFSRGTFRVRGDTIDVFPAENADYALRIEMFDDEIESLHFFDPLTGKV 253

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           ++ +    +Y  SHYVTPR T+  A++ IKEEL+ R     + G+ +E QR++QR  +DL
Sbjct: 254 LQKIPRFTVYPGSHYVTPRETVLRAIETIKEELRERKEWFRQNGKFIEEQRIDQRTRFDL 313

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   G  + IENYSR+LTGR  G+ PPTL +Y+P D+L+F+DESHVTI Q++GMY GD
Sbjct: 314 EMMHELGFTKGIENYSRHLTGRKAGDAPPTLVDYLPSDALMFLDESHVTIGQLNGMYNGD 373

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK  L +YGFRLPS +DNRPLRF+E+      T+ VSATP ++EL    G +VEQ++R
Sbjct: 374 RSRKTNLVDYGFRLPSALDNRPLRFDEFESKMRQTVFVSATPANYELAHS-GQVVEQVVR 432

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP +E+R A TQV+D+  EI+   ++  R+L+T LTKRMAE LTE+L E  IRVR
Sbjct: 433 PTGLVDPAIEVRPASTQVDDLLAEIHDRVEKSERVLVTTLTKRMAEQLTEFLSENGIRVR 492

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ S
Sbjct: 493 YLHSDIDTVERVEIVRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERS 552

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARN+N   ILYADT+T S++ AIDET RRR KQL +N++HNI P  + ++I 
Sbjct: 553 LIQTIGRAARNLNGSAILYADTMTDSMKRAIDETERRRAKQLAYNEQHNITPAGIMKEIR 612

Query: 731 EVIDPILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           ++ID +     +   + +    AQ   +S+K+    +K L KQM   A NL FE+AA+ R
Sbjct: 613 DLIDGVFHPQDSLQELHVADEQAQYDVMSEKELSREIKKLEKQMMEHAKNLEFEKAAQTR 672

Query: 788 DEIKRLKSSPY 798
           D++  L+   +
Sbjct: 673 DQLHLLREKAF 683


>gi|283784539|ref|YP_003364404.1| UvrABC system protein B (excinuclease ABC subunit B) [Citrobacter
           rodentium ICC168]
 gi|282947993|emb|CBG87557.1| UvrABC system protein B (excinuclease ABC subunit B) [Citrobacter
           rodentium ICC168]
          Length = 673

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/664 (56%), Positives = 479/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTG     V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGHVEGTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKDELGERRKSLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPVIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRARASINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N +H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITASMAKAISETERRREKQQQYNAEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATT----------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T              D+ ++ +S K  +  +  L  QM   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRSTAKADSVEMDMSPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|218778625|ref|YP_002429943.1| excinuclease ABC, B subunit [Desulfatibacillum alkenivorans AK-01]
 gi|218760009|gb|ACL02475.1| excinuclease ABC, B subunit [Desulfatibacillum alkenivorans AK-01]
          Length = 679

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/659 (54%), Positives = 474/659 (71%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           ++ T FQ+ + + P GDQPAAI  L KG++  +K Q+LLGVTGSGKTFTMA V     +P
Sbjct: 15  EEFTEFQVVSPFEPKGDQPAAIEYLAKGVNEGKKHQVLLGVTGSGKTFTMAHVAARCGKP 74

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+APNK LAAQLY+EFK  FPHNAVEYFVSYYDYYQPEAY+P +DTYIEK+S INE I
Sbjct: 75  VLVLAPNKTLAAQLYNEFKQLFPHNAVEYFVSYYDYYQPEAYLPNSDTYIEKDSKINEMI 134

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RH+AT ++L R D I+V+SVSCIYG+G+ E Y  M ++L +G  + +++LL  LV  
Sbjct: 135 DKLRHAATVAVLTRRDVIIVASVSCIYGLGAPEDYIAMRLELTVGMELSREKLLKDLVAM 194

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y+R D+   RG FRV GD +EI+P++ +D A R+  FG+D++ ISE  PL G  ++ ++
Sbjct: 195 LYERNDMDFHRGVFRVRGDRVEIYPAYWDDQAIRIEFFGDDVDSISEIDPLRGVVMKKLQ 254

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              +Y  SHYVT + TL  AM  I EELK+R+       +L+EAQR+++R  YDLEM+  
Sbjct: 255 RTMVYPASHYVTSKETLKRAMGAITEELKVRVAHFRDTNQLIEAQRIQERTDYDLEMMHE 314

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENY+R+LTGRN GEPPPTL ++ PED L+F+DESH+ +PQ+ GM+RGD  RK 
Sbjct: 315 LGYCTGIENYARHLTGRNEGEPPPTLIDFFPEDFLMFIDESHMAVPQVRGMFRGDRSRKE 374

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL ++GFRLPS +DNRPL FEE+       + VSATP  +ELE   G I EQI+RPTGL+
Sbjct: 375 TLVQFGFRLPSALDNRPLMFEEFAEKVKQVVYVSATPADYELEVADGAIAEQIVRPTGLM 434

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP + +R A  QV+D+ +EI +  +   R+L+T LTKRMAEDL +Y     + VRY+HS+
Sbjct: 435 DPEIIVRPATNQVDDLLEEIRVRVENNERVLITTLTKRMAEDLCDYYEGLGLAVRYLHSD 494

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KT+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT+
Sbjct: 495 IKTMERMEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSARSLIQTV 554

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNVN KVILYAD IT+S+++A+DE+ RRR+ Q  +N+ + I P+S+K++I  + D 
Sbjct: 555 GRAARNVNGKVILYADAITRSMKMAMDESQRRRDLQAAYNEANGITPESIKKEIGSIFDS 614

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +   D  T        Q ++  K     +  L K+M  AA  L FE AA +RD+IK LK
Sbjct: 615 VYEADYVTVEADKKEAQEAIESKDLDRLIAMLEKEMQQAAKELAFERAAELRDQIKDLK 673


>gi|171320673|ref|ZP_02909689.1| excinuclease ABC, B subunit [Burkholderia ambifaria MEX-5]
 gi|171094076|gb|EDT39169.1| excinuclease ABC, B subunit [Burkholderia ambifaria MEX-5]
          Length = 696

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/680 (54%), Positives = 491/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  
Sbjct: 13  DESKFVTFEGSPFQLYQPYPPAGDQPTAIETLVEGVGDGLAFQTLLGVTGSGKTFTMANT 72

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 73  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y +MI+ L+ GD + Q+++
Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHKMILTLRTGDKLGQRDV 192

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 193 IARLIAMQYSRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +
Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRF 312

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ+
Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A +QV+DV  EIN     G R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLTEINARVNAGERVLITVLTKRMAEQLTEFLADHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYADT+T+S++ AI ET RRR KQ+ HN+K  I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAHNEKMGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
             RD++  L+   +   + D
Sbjct: 671 ATRDQLALLRERVFGANVGD 690


>gi|194289257|ref|YP_002005164.1| excinuclease ABC subunit b [Cupriavidus taiwanensis LMG 19424]
 gi|193223092|emb|CAQ69097.1| ATP-dependent DNA excision repair enzyme, DNA damage recognition
           component [Cupriavidus taiwanensis LMG 19424]
          Length = 694

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/673 (54%), Positives = 487/673 (72%), Gaps = 8/673 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           +  K +TF    FQ+   + P+GDQP AI QL++G+      Q LLGVTGSGKTFTMA V
Sbjct: 12  DEDKFVTFPDSPFQLYQPFPPAGDQPEAIRQLVEGVEDGLSYQTLLGVTGSGKTFTMANV 71

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 72  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SLLER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 132 SSINEHIEQMRLSATKSLLERRDTVIVATVSAIYGIGNPTEYHQMILTLRAGDKISQRDV 191

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A R+ MF +++E +  F PLTG
Sbjct: 192 IARLIAMQYTRNETDFQRGTFRVRGDTIDIFPAEHAEMAVRLEMFDDEVESLHFFDPLTG 251

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK EL+ RL    KE RL+EAQRLEQR  +
Sbjct: 252 RVRQKIPRFTVYPSSHYVTPRETVLRAIEAIKAELRERLEFFHKENRLVEAQRLEQRTRF 311

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML   G C+ IENYSR+L+G  PG+PPPTL +Y+P D+L+F+DESHV I Q++GMY 
Sbjct: 312 DLEMLSELGFCKGIENYSRHLSGARPGDPPPTLVDYLPPDALMFLDESHVLIGQLNGMYN 371

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL EYGFRLPS +DNRPL+F+E+       + V+ATP  +E E   G +VEQ+
Sbjct: 372 GDRARKTTLVEYGFRLPSALDNRPLKFDEFERKMRQVMFVTATPAQFEQEHA-GQVVEQV 430

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP + +R A TQV+D+  EI+   + G R+L+T LTKRMAE LTE+L E  ++
Sbjct: 431 VRPTGLVDPIIMVRPATTQVDDLLSEIHARVEAGERVLVTTLTKRMAEQLTEFLTENGVK 490

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 491 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 550

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN   ILYAD +T S++ AIDET RRR KQ+  N+ + I P+ V ++
Sbjct: 551 RSLIQTIGRAARNVNGTAILYADRMTDSMKKAIDETERRRAKQIAFNEANGITPRGVVKR 610

Query: 729 IMEVIDPILLEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           I ++ID +     A   +    +Q     +S+K+    +K L K M   A NL FE+AA+
Sbjct: 611 IKDIIDGVYNASDAKAELQAAQEQARYEDMSEKQVSREIKRLEKLMLDHARNLEFEQAAQ 670

Query: 786 IRDEIKRLKSSPY 798
           +RD++ +LK+  +
Sbjct: 671 VRDQLAKLKAQVF 683


>gi|170702361|ref|ZP_02893253.1| excinuclease ABC, B subunit [Burkholderia ambifaria IOP40-10]
 gi|170132720|gb|EDT01156.1| excinuclease ABC, B subunit [Burkholderia ambifaria IOP40-10]
          Length = 696

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/680 (54%), Positives = 491/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  
Sbjct: 13  DESKFVTFEGSPFQLYQPYPPAGDQPTAIETLVEGVGDGLAFQTLLGVTGSGKTFTMANT 72

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 73  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y +MI+ L+ GD + Q+++
Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHKMILTLRTGDKLGQRDV 192

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 193 IARLIAMQYSRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +
Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKDELRERLELFHRDGKLVEAQRLEQRTRF 312

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ+
Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A +QV+DV  EIN     G R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLTEINARVNAGERVLVTVLTKRMAEQLTEFLADHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYADT+T+S++ AI ET RRR KQ+ HN+K  I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAHNEKMGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
             RD++  L+   +   + D
Sbjct: 671 ATRDQLALLRERVFGANVGD 690


>gi|189426491|ref|YP_001953668.1| excinuclease ABC subunit B [Geobacter lovleyi SZ]
 gi|189422750|gb|ACD97148.1| excinuclease ABC, B subunit [Geobacter lovleyi SZ]
          Length = 665

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/657 (55%), Positives = 480/657 (73%), Gaps = 1/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ T Y PSGDQP AI +L+ GI   +K Q+LLGVTGSGKTFT+A VI    RPA+V+A
Sbjct: 4   FKLATTYTPSGDQPQAIDELVAGIERGDKHQVLLGVTGSGKTFTVANVIARTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++ID++RH
Sbjct: 64  PNKTLAAQLYGEFKELFPDNAVEYFVSYYDYYQPEAYLPNTDTFIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D I+V+SVSCIYGIGS E+Y  M +    GD   +  LL  LV+ QY+R 
Sbjct: 124 SATMSLLTRPDVIIVASVSCIYGIGSPEAYQAMHIFFHQGDDYGRDTLLKKLVEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD IEIFP++  + A R+  FG+++E IS+  PL G  ++ +  + I+
Sbjct: 184 DTDFHRGTFRVRGDVIEIFPAYDSERALRIEFFGDEVETISQIDPLRGVVLQKLTKVSIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV+ +  L  ++  I+ +L+ R+   + +G+LLEAQR+EQR  YD+EM+E  G CQ
Sbjct: 244 PASHYVSSKENLERSVAQIRLDLEERIRLFKDQGKLLEAQRIEQRTYYDIEMMEEMGFCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL  R PGEPP TL +Y P+D +LFVDESH+T  Q+ GMYRGD  RK TL EY
Sbjct: 304 GIENYSRYLDNRQPGEPPFTLIDYFPKDFILFVDESHITNAQVGGMYRGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL F+E+       + VSATP  +EL+Q  G+ VEQ+IRPTGLVDP +E
Sbjct: 364 GFRLPAALDNRPLNFQEFESRINQVVHVSATPADYELQQAGGVFVEQVIRPTGLVDPQIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A  QV+D+  E+ L   +G R+L+T LTKRMAE+LT Y  E  +RVRY+HS++ T+E
Sbjct: 424 IRPAAGQVDDLLHEVRLTVAKGDRVLVTTLTKRMAEELTNYYQELGVRVRYLHSDIDTIE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQT GRAAR
Sbjct: 484 RMQILRSLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTCGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V++YAD +T+S+Q  +DET RRR KQL +N++H I P++V++ +  +++ I  +D
Sbjct: 544 NVDGRVLMYADQVTRSMQACLDETGRRRSKQLAYNQEHGITPETVRKGMRSILESIAEKD 603

Query: 741 AATTNISIDAQQ-LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             T  +  D ++   +  K+    +K +RK+M  AA  L+FE+AA +RD IK+L+ +
Sbjct: 604 YVTPPVVADLEEAYGIELKEIPKLIKKMRKEMLAAAKELDFEKAAELRDRIKQLEDA 660


>gi|167572218|ref|ZP_02365092.1| excinuclease ABC subunit B [Burkholderia oklahomensis C6786]
          Length = 696

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKT+TMA  
Sbjct: 13  DESKFVTFDGSPFQLYQPYPPAGDQPTAITTLVEGVEDGLSFQTLLGVTGSGKTYTMANA 72

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 73  IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L++GD + Q+E+
Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRLGDKIGQREV 192

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG
Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDSLHLFDPLTG 252

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IKEEL+ RL    +EG+L+EAQRLEQR  +
Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRETVMRAVETIKEELRERLEFFHREGKLVEAQRLEQRTRF 312

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYN 372

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G   EQ+
Sbjct: 373 GDRARKENLVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVSGQTAEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 432 VRPTGLVDPAIEVRPASTQVDDVLSEITERVKADERVLITVLTKRMAEQLTEFLADHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYAD IT S++ AIDET RRR KQ+  N++  I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGKAILYADRITDSMRRAIDETERRRAKQIAFNEQMGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
           + RD++  L+   +   + D
Sbjct: 671 QTRDQLALLRERVFGANVGD 690


>gi|167565045|ref|ZP_02357961.1| excinuclease ABC subunit B [Burkholderia oklahomensis EO147]
          Length = 696

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKT+TMA  
Sbjct: 13  DESKFVTFDGSPFQLYQPYPPAGDQPTAITTLVEGVEDGLSFQTLLGVTGSGKTYTMANA 72

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 73  IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L++GD + Q+E+
Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRLGDKIGQREV 192

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG
Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVDLFDDEVDSLHLFDPLTG 252

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IKEEL+ RL    +EG+L+EAQRLEQR  +
Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRETVMRAVETIKEELRERLEFFHREGKLVEAQRLEQRTRF 312

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYN 372

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G   EQ+
Sbjct: 373 GDRARKENLVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVSGQTAEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 432 VRPTGLVDPAIEVRPASTQVDDVLSEITERVKADERVLITVLTKRMAEQLTEFLADHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYAD IT S++ AIDET RRR KQ+  N++  I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGKAILYADRITDSMRRAIDETERRRAKQIAFNEQMGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
           + RD++  L+   +   + D
Sbjct: 671 QTRDQLALLRERVFGANVGD 690


>gi|315180790|gb|ADT87704.1| excinuclease ABC subunit B [Vibrio furnissii NCTC 11218]
          Length = 676

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/669 (55%), Positives = 486/669 (72%), Gaps = 19/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y PSGDQP AI QLL G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSEYQPSGDQPEAIRQLLDGVDAGLAHQTLLGVTGSGKTFTLANVIAKAQRPTILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++++N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDAAVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG  K R++    +
Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVECISIFDPLTGAIKQRDLPRFTV 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A+++IK EL  R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEHIKAELASRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLVIDESHVTVPQIGAMYKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    I +Q++RPTGL+DP +
Sbjct: 365 YGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSGNDIADQVVRPTGLLDPEL 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGLFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK---EKIMEVID-- 734
           RN+  + ILYAD ITKS++ A+DET RRREKQ  +N+   I PQ++K   + IME+ D  
Sbjct: 545 RNLEGRAILYADNITKSMKKAMDETNRRREKQQAYNEAMGIQPQALKRNVKDIMELGDIT 604

Query: 735 ---------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
                     + L   A T+ S D    +++ ++ +  +  L  QM+  A +L FE AA 
Sbjct: 605 KSRKQRTSKVVPLAKVAETSASYD----TMTPQQLEKEINKLEAQMYKHAQDLEFELAAE 660

Query: 786 IRDEIKRLK 794
            RD+++ L+
Sbjct: 661 KRDQLEALR 669


>gi|52425426|ref|YP_088563.1| excinuclease ABC subunit B [Mannheimia succiniciproducens MBEL55E]
 gi|81825519|sp|Q65ST2|UVRB_MANSM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|52307478|gb|AAU37978.1| UvrB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 678

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/664 (55%), Positives = 484/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +++ PSGDQP AI  L + ++     Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 10  FILHSEFKPSGDQPQAIEILAENLNDGLAHQTLLGVTGSGKTFTIANVIAKLNRPAMLLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 70  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY +M++ L+ G  ++Q+++L  L + QY R 
Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQTGAIIDQRQILVRLAELQYTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V    +Y
Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGTGFGAVPRFTVY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK EL  R     KE +LLE QR+ QR  +D+EM+   G C 
Sbjct: 250 PKTHYVTPREQILDAIEKIKSELADRREYFIKENKLLEEQRITQRTQFDIEMMNELGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTLF+Y+P D+LL +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDALLVIDESHVTVPQIGGMYRGDRSRKETLVEY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGTEIIDQVVRPTGLLDPEIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A +  R+L+T LTKRMAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 430 IRPVSIQVDDLLSEARQRADRNERVLVTTLTKRMAEDLTDYLDEHGIRVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD IT S++ AI ET RRREKQ+++N++H I PQ + +K+ E++D  + + 
Sbjct: 550 NLKGKAILYADRITNSMEKAITETNRRREKQMKYNEEHGITPQGLNKKVGELLD--IGQG 607

Query: 741 AATTNISIDAQQ----------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            +  + +    Q          + ++ K+ +  +K L +QM+  A +L FE+AA IRD++
Sbjct: 608 GSNKSRNKPRSQKAAEPATTYAIPMTAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRDQL 667

Query: 791 KRLK 794
            +L+
Sbjct: 668 HKLR 671


>gi|323525489|ref|YP_004227642.1| excinuclease ABC subunit B [Burkholderia sp. CCGE1001]
 gi|323382491|gb|ADX54582.1| excinuclease ABC, B subunit [Burkholderia sp. CCGE1001]
          Length = 697

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/679 (54%), Positives = 486/679 (71%), Gaps = 8/679 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK + F    FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  
Sbjct: 14  DESKFVRFEGSPFQLYQPYPPAGDQPTAIETLVEGVEDGLSFQTLLGVTGSGKTFTMANT 73

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 74  IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 133

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 134 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQRDI 193

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RG+FRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 194 IARLIAMQYNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 253

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK EL+ RL     EG+L+EAQRLEQR  +
Sbjct: 254 RVRQKIPRFTVYPSSHYVTPRDTVVRAVETIKAELRERLEFFYSEGKLVEAQRLEQRTRF 313

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+++ +DESHV I Q++GMY 
Sbjct: 314 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDAIMLLDESHVLIGQLNGMYN 373

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G + EQ+
Sbjct: 374 GDRARKENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-KKTSGQVAEQL 432

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R ARTQV+DV  EIN     G R+L+TVLTKRMAE LTE+L +  I+
Sbjct: 433 VRPTGLVDPEIEVRPARTQVDDVLAEINERVAAGDRVLVTVLTKRMAEQLTEFLADHGIK 492

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 493 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 552

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYAD +T S++ AIDET RRR KQ+  N +H I P+ V ++
Sbjct: 553 RSLIQTIGRAARNVNGKAILYADKVTDSMRRAIDETERRRAKQIAFNLEHGITPRGVVKR 612

Query: 729 IMEVIDPILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           I ++ID +   D A   +      A+   +S+K+    LK L KQM   A NL FE+AA+
Sbjct: 613 IRDIIDGVYNVDDARAELKEQQTRAKFEDMSEKQLAKELKRLEKQMMEHAKNLEFEKAAQ 672

Query: 786 IRDEIKRLKSSPYFQGLDD 804
            RD++  L+   +   + D
Sbjct: 673 TRDQLALLRQRVFGANVGD 691


>gi|332534083|ref|ZP_08409932.1| excinuclease ABC subunit B [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036520|gb|EGI72988.1| excinuclease ABC subunit B [Pseudoalteromonas haloplanktis ANT/505]
          Length = 664

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/658 (55%), Positives = 482/658 (73%), Gaps = 7/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++ + P+GDQP AI QL +G+ +    Q LLG TG+GKTFTMA +I  + RP I+MA
Sbjct: 5   FQLRSHFKPAGDQPTAIKQLCEGLEAGLAHQTLLGATGTGKTFTMANIINDLNRPTIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYV  +DT+IEK++SINE I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPKNAVEYFVSYYDYYQPEAYVVSSDTFIEKDASINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  +SY +M++ LK+G+ V+Q+++L  L + QY R 
Sbjct: 125 SATKALLERRDTIIVASVSAIYGLGDPKSYMKMMLLLKVGEKVDQRDMLRRLAEIQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGT+RV G+ ++IFP+  +  A RV MF ++IE +S F PLTG   +++    IY
Sbjct: 185 DIDFSRGTYRVRGEVVDIFPAESDTFAVRVEMFDDEIERLSIFDPLTGAVEKHIVRTTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A+  I+EELK R  +L    +L+E QR+ QR  YD+EM+   G C 
Sbjct: 245 PKTHYVTPREKILGAIDKIQEELKDRRAQLLSANKLVEEQRVTQRTQYDMEMMRELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PG+PPPTL +Y+P+D+L+ +DESHVT+ QI  MY+GD  RK  L EY
Sbjct: 305 GIENYSRYLSGRTPGDPPPTLLDYLPDDALMIIDESHVTVSQIGAMYKGDRSRKENLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS MDNRPLRFEE+  + P TI VSATPG +ELE+C G I EQ+IRPTGL+DP +E
Sbjct: 365 GFRMPSAMDNRPLRFEEFEAISPQTIYVSATPGDFELERCVGAIAEQVIRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI  + ++G R+L+T LTKRM+EDLT+YL E  ++VRY+HS++ T+E
Sbjct: 425 VRPVGDQVDDLLSEIYKSVEKGERVLVTTLTKRMSEDLTDYLSEHGVKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  S+IQTIGRAAR
Sbjct: 485 RVEIIRDLRAGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSARSIIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +++ + ILY D ITKS+  A+DET RRRE Q  +N +H I P S+ +KI++ +D  + E+
Sbjct: 545 HLDGRAILYGDKITKSMAKAMDETARRREIQHAYNVEHGIEPHSLAKKILDAMD--VGEE 602

Query: 741 AATTN----ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A   +    I  D++++ LS K+    +K L  +MH  A +L FE+A  +RDEI  L+
Sbjct: 603 AGPKDNLRLIRKDSKKV-LSAKEITVQIKQLETKMHAYASDLEFEKAGSVRDEIHELQ 659


>gi|229523191|ref|ZP_04412598.1| excinuclease ABC subunit B [Vibrio cholerae TM 11079-80]
 gi|229339554|gb|EEO04569.1| excinuclease ABC subunit B [Vibrio cholerae TM 11079-80]
          Length = 676

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/668 (54%), Positives = 482/668 (72%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG    R++    I
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLARFTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATP  +EL +  G + EQ++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    R+L+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERVLVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++  I PQ +K  + ++++   L 
Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D A +    +++ + L+K             ++ +  +  L   M+  A NL FE AA+ 
Sbjct: 602 DIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661

Query: 787 RDEIKRLK 794
           RDEI  L+
Sbjct: 662 RDEIHLLR 669


>gi|89092647|ref|ZP_01165600.1| excinuclease ABC subunit B [Oceanospirillum sp. MED92]
 gi|89083159|gb|EAR62378.1| excinuclease ABC subunit B [Oceanospirillum sp. MED92]
          Length = 673

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/677 (55%), Positives = 492/677 (72%), Gaps = 25/677 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA+L++GI S    Q LLGVTGSGKTFT+A VI   QRP I+MA
Sbjct: 5   FKVHSKFTPAGDQPNAIAELVEGIESGLAAQTLLGVTGSGKTFTVANVIAQAQRPTIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 65  HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G  +SY  M++ +  GD ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLEREDAIIVATVSAIYGLGDPKSYLGMMLHVDRGDIIDQRAVLRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RGT+RV GD I+IFP+  E  A R+ +F  +IEEIS F PLTG+ +R V    IY
Sbjct: 185 DVELHRGTYRVRGDVIDIFPAESEKEAVRLELFDEEIEEISYFDPLTGEVLRRVPRATIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A+  IK+EL+ RL +L +  +L+EAQRLEQR  YD+EM+   G C 
Sbjct: 245 PKSHYVTPRETLLAAVDKIKDELRGRLEQLRENNKLVEAQRLEQRTLYDMEMIMELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR+ G+ PPTLF+Y+P++SLL +DESHVT+PQI  MYRGD  RK TL E+
Sbjct: 305 GIENYSRYLSGRDSGQAPPTLFDYLPDNSLLVIDESHVTVPQIGAMYRGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEEW    P  I VSATP  +E    Q  +VEQ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPMKFEEWERESPQMIFVSATPSKYEAANQQ-QVVEQVVRPTGLIDPIVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI     +  R+++TVLTKRMAEDLTE+L E  +RVRY+HS++ T+E
Sbjct: 424 VRPASTQVDDLLSEIQKIVAKQERVVVTVLTKRMAEDLTEFLDEHGVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR+G+FDVLVGINLLREG+D+PE  LV ILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 484 RVEIIRDLRIGEFDVLVGINLLREGIDMPEVSLVTILDADKEGFLRSDTSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILYAD IT S+Q A+DET RRR+KQ+  N++H I P+ +K+ + ++     +E 
Sbjct: 544 NVNGKAILYADRITGSMQRAMDETDRRRQKQIAFNEEHGIVPKGIKKSVADI-----MEG 598

Query: 741 AATT-----------------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
           A+T                  +  +D  Q+S +K+  KA  K L  +M+ AA NL FE A
Sbjct: 599 ASTVPGRKASRTAKKVAEKAGDYQVDPAQMS-AKELSKAMTK-LEDKMYEAAKNLEFELA 656

Query: 784 ARIRDEIKRLKSSPYFQ 800
           A+ RDE++ LK   + +
Sbjct: 657 AKYRDELQTLKQHSFIE 673


>gi|113867172|ref|YP_725661.1| excinuclease ABC subunit B [Ralstonia eutropha H16]
 gi|113525948|emb|CAJ92293.1| Excinuclease ABC, helicase subunit (B) [Ralstonia eutropha H16]
          Length = 694

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/673 (54%), Positives = 488/673 (72%), Gaps = 8/673 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           +  K +TF    FQ+   + P+GDQP AI QL++G+      Q LLGVTGSGKTFTMA V
Sbjct: 12  DEDKFVTFPGSPFQLYQPFPPAGDQPEAIRQLVEGVEDGLSFQTLLGVTGSGKTFTMANV 71

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  M RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 72  IARMGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SLLER D I+V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 132 SSINEHIEQMRLSATKSLLERRDTIIVATVSAIYGIGNPTEYHQMILTLRAGDKISQRDV 191

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A R+ MF +++E +  F PLTG
Sbjct: 192 IARLIAMQYTRNETDFQRGTFRVRGDTIDIFPAEHAEMAVRLEMFDDEVESLQFFDPLTG 251

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK EL+ RL    KE RL+EAQRLEQR  +
Sbjct: 252 RVRQKIPRFTVYPSSHYVTPRETVLRAIEAIKSELRERLEFFHKENRLVEAQRLEQRTRF 311

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML   G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHV I Q++GMY 
Sbjct: 312 DLEMLSELGFCKGIENYSRHLSGAKPGEPPPTLVDYLPPDALMFLDESHVLIGQLNGMYN 371

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL EYGFRLPS +DNRPL+F+E+       + VSATP  +E +   G +VEQ+
Sbjct: 372 GDRARKTTLVEYGFRLPSALDNRPLKFDEFERKMRQVMFVSATPAQFEQDNA-GQVVEQV 430

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP + +R A TQV+D+  EI+   + G R+L+T LTKRMAE LTE+L E  ++
Sbjct: 431 VRPTGLVDPIIMVRPATTQVDDLLSEIHARVEVGERVLVTTLTKRMAEQLTEFLSENGVK 490

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 491 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 550

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN   ILYAD +T+S++ AI ET RRR KQ+  N+ + I P+ V ++
Sbjct: 551 RSLIQTIGRAARNVNGTAILYADRMTESMKKAIGETERRRAKQIAFNEANGITPRGVVKR 610

Query: 729 IMEVIDPILLEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           I ++ID +   + A   +    +Q     +S+K+    ++ L K M   A NL FE+AA+
Sbjct: 611 IKDIIDGVYSVNDARAELLAAQEQARYEDMSEKQVSKEIRRLEKLMLDHARNLEFEQAAQ 670

Query: 786 IRDEIKRLKSSPY 798
           +RD++ +LK+  +
Sbjct: 671 VRDQLAKLKAQVF 683


>gi|317047396|ref|YP_004115044.1| excinuclease ABC subunit B [Pantoea sp. At-9b]
 gi|316949013|gb|ADU68488.1| excinuclease ABC, B subunit [Pantoea sp. At-9b]
          Length = 673

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/664 (56%), Positives = 479/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVE+FVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEFFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  V    +Y
Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVVSVVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  +M+ IK+EL +R   L +  +LLE QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQSMEEIKKELVVRRQVLLENNKLLEEQRITQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPILE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI        R+L+T LTKRMAEDLTEYL E   +VRY+HS++ T+E
Sbjct: 425 VRPVTTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD IT S+  AI+ET RRREKQ  +N+ + I PQ + +KI ++++  L ++
Sbjct: 545 NINGKAILYADKITNSMARAIEETERRREKQQRYNEVNGIVPQGLNKKITDILE--LGKN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
              T              +A  L+L+ +  +  +  L  QM   A NL FEEAAR+RD++
Sbjct: 603 VVKTRGKGKTATRSAAETEANYLALTPQAMQKKIHELEGQMQQHAQNLEFEEAARVRDQL 662

Query: 791 KRLK 794
             L+
Sbjct: 663 HELR 666


>gi|330446481|ref|ZP_08310133.1| excinuclease ABC, B subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490672|dbj|GAA04630.1| excinuclease ABC, B subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 675

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/669 (54%), Positives = 488/669 (72%), Gaps = 18/669 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + ++Y PSGDQP AI QL+ G+ S    Q LLGVTGSGKTFT+A VI    RP +++
Sbjct: 4   LFSLASEYSPSGDQPTAIEQLVDGLDSGLAHQTLLGVTGSGKTFTVANVIAQANRPTLIL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR
Sbjct: 64  APNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+++SVS IYG+G  +SY +M++ ++ GD ++Q+++L  L + QY R
Sbjct: 124 LSATKALMERRDVIIIASVSAIYGLGDPDSYLKMMLHVRRGDFLDQRDILRRLAELQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIK 378
            D+   RGTFRV G+ I+IFP+  E  A R+ +F +++E IS F PLTG  I R++    
Sbjct: 184 NDVAFERGTFRVRGEVIDIFPAESEKEAIRLELFDDEVECISSFDPLTGSVIQRDLPRTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  A++ IK+EL +R  +     +L+E QR+ QR  +D+EM+   G 
Sbjct: 244 IYPKTHYVTPREKILEAIEGIKKELIVRKEQFISNNKLVEEQRISQRTQFDIEMMNELGF 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+ QI  MYRGD  RK  L 
Sbjct: 304 CSGIENYSRYLSGRAEGEPPPTLFDYLPADGLLIIDESHVTVSQIGAMYRGDRSRKENLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+    I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPMKFEEFESLAPQTIYVSATPGNYELEKSSNDIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI++   +  R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ T
Sbjct: 424 IEVRPVATQVDDLLSEIHIREAKNERVLVTTLTKRMAEDLTEYLTEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----- 733
           ARN+  K ILY D IT S++ AI+ET RRREKQ E+N KH I PQ + +KI +++     
Sbjct: 544 ARNIEGKAILYGDRITGSMERAINETQRRREKQTEYNLKHGITPQKLNKKIGDILELGGA 603

Query: 734 DPILLEDAATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           +P     A + N + D  ++        +L+ ++ ++ +++L KQM+  A NL FE+AA 
Sbjct: 604 NP----RAKSRNRAADLHKVAETKGTYSTLTPQQLESQIQALEKQMYDFAQNLEFEQAAE 659

Query: 786 IRDEIKRLK 794
            RD+I++L+
Sbjct: 660 TRDKIQKLR 668


>gi|300722421|ref|YP_003711709.1| ATP-dependent DNA excision repair enzyme UvrAC [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628926|emb|CBJ89509.1| ATP-dependent DNA excision repair enzyme UvrAC [Xenorhabdus
           nematophila ATCC 19061]
          Length = 675

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/662 (56%), Positives = 476/662 (71%), Gaps = 8/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP+AI QL +G+      Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 9   FKLHSDFKPGGDQPSAIRQLQEGLEDGLAHQTLLGVTGSGKTFTIANVIANLNRPAMILA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSE K FFP N+VEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 69  PNKTLAAQLYSEMKEFFPENSVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  ESY +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 129 SATKALLERRDVIVVASVSAIYGLGDPESYLKMMLHLTDGMLIDQRAILRRLAELQYTRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+   + A RV +F +++E +S F PLTGQ   NV    +Y
Sbjct: 189 DQAFQRGTFRVRGEVIDIFPAESNEHALRVELFDDEVERLSLFDPLTGQVQYNVPRYTVY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  +M  IK EL+ R   L   G+LLE QR+ QR  +DLEM+   G C 
Sbjct: 249 PKTHYVTPRERILQSMAEIKIELEQRRQVLLASGKLLEEQRITQRTQFDLEMMNELGYCS 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 309 GIENYSRYLSGRATGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRSRKETLVEY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI +SATPG +ELE+    IVEQ++RPTGL+DP VE
Sbjct: 369 GFRLPSALDNRPLRFEEFEALAPQTIYISATPGHYELEKSGNEIVEQVVRPTGLIDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI L A +  R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 429 VRPVTTQVDDLMSEIRLRAVKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 489 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI- 736
           N++ K ILY D IT S+  AI ET RRR KQ   N +H I P  + +KI +++    P+ 
Sbjct: 549 NLHGKAILYGDRITDSMAKAIGETERRRVKQQAFNDEHGIVPTGLNKKIGDILRIGQPVN 608

Query: 737 ---LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                   +   +  D  Q  LS K+ +  ++ L  +M+  A +L FE+AA +RD+++ L
Sbjct: 609 GKGKTRGKSKVTLGTDDYQ-KLSAKELENKIRELENKMYQHARDLEFEQAANVRDQVQAL 667

Query: 794 KS 795
           ++
Sbjct: 668 RA 669


>gi|262402633|ref|ZP_06079194.1| excinuclease ABC subunit B [Vibrio sp. RC586]
 gi|262351415|gb|EEZ00548.1| excinuclease ABC subunit B [Vibrio sp. RC586]
          Length = 676

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/668 (54%), Positives = 484/668 (72%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ S    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLDSGLAHQTLLGVTGSGKTFTLANVIATAQRPTILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG    R++    +
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFEPLTGVVTSRDLARFTV 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIELIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATPG +EL +  G + +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPGEYELTKSGGEVADQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARVRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N K ILYAD+ITKS++ A+DET RRREKQ  +N++  I PQ +K  + ++++   L 
Sbjct: 545 RNINGKAILYADSITKSMRKAMDETERRREKQHAYNEQLGITPQPLKRSVKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D A +    +++ + L+K             ++ +  +  L   M+  A NL FE AA+ 
Sbjct: 602 DIAKSRKQKNSKVVPLAKVAEESAQYQVLTPQQLEKEISKLETVMYQHAQNLEFELAAQK 661

Query: 787 RDEIKRLK 794
           RDEI +L+
Sbjct: 662 RDEIHQLR 669


>gi|114565819|ref|YP_752973.1| excinuclease ABC subunit B [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114336754|gb|ABI67602.1| Excinuclease ABC subunit B [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 665

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/654 (55%), Positives = 479/654 (73%), Gaps = 4/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y  +GDQP AI QLL G+ +  + Q LLGVTGSGKTFTMA++IE +QRPA+VMA
Sbjct: 4   FKLHSSYKATGDQPQAIKQLLDGVAAGFRDQTLLGVTGSGKTFTMARIIEELQRPALVMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LA QLYSEFK FFP NAVEYF+SYYDYYQPEAYVP+TDTYIEK+SSIN++ID++RH
Sbjct: 64  PNKTLAGQLYSEFKQFFPDNAVEYFISYYDYYQPEAYVPQTDTYIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT  +LER D I+V+SVSCIYG+G+ E Y  + V L+ G  + + +LL  LV   Y+R 
Sbjct: 124 SATAGVLERRDVIIVASVSCIYGLGAPEDYYSLAVSLRPGMEIARDDLLRRLVDNHYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FR  GD +EIFP+   + A RV  FG++I+ I EF PL+G+ I       I+
Sbjct: 184 DFSFFRGNFRARGDVVEIFPASSNENALRVEFFGDEIDRIIEFNPLSGEIIGRRLHSMIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT R  +  A   I+EEL  +L   + EG+LLEAQRLEQR  YDLEM+   G C+
Sbjct: 244 PASHFVTTRERMLEAAGQIEEELAQQLARFKMEGKLLEAQRLEQRTRYDLEMIREIGYCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+TGR PGEPP TL ++ P+D LLF+DESH+ +PQI GMY GD  RK  L ++
Sbjct: 304 GIENYSRYITGRAPGEPPYTLLDFFPDDFLLFIDESHIGVPQIRGMYEGDRSRKQNLVDF 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+       I VSATP  +EL+     + EQIIRPTGL+DP VE
Sbjct: 364 GFRLPSALDNRPLKFAEFQEKINQVIYVSATPADYELQHSVQ-VSEQIIRPTGLLDPEVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +RS++ Q++D+  E     ++G R+L+T LTKRMAEDLT+YL +  ++VRYMHS++  L+
Sbjct: 423 VRSSQNQIDDLMAEARAVVEKGYRVLITTLTKRMAEDLTDYLADTGLKVRYMHSDIDALQ 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+R+LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SL+QTIGRAAR
Sbjct: 483 RLEILRELRSGVFDVLVGINLLREGLDLPEVALVAILDADKEGFLRSTRSLVQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  KVI+YAD IT S++ AIDET RRR KQLE+N++H+I P+S+++ I   ++  + E+
Sbjct: 543 NVEGKVIMYADEITLSMKSAIDETNRRRLKQLEYNREHHITPESIRKAIYAPVEATIAEE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A   +I  D Q+  +++++ +  L+ +   M+ AA+ L FE+AAR+RD I+ L+
Sbjct: 603 AVEYDIR-DFQK--MAREEREKLLREMEADMYRAAETLEFEKAARLRDSIRELQ 653


>gi|312962074|ref|ZP_07776569.1| excinuclease ABC subunit B [Pseudomonas fluorescens WH6]
 gi|311283626|gb|EFQ62212.1| excinuclease ABC subunit B [Pseudomonas fluorescens WH6]
          Length = 671

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/669 (54%), Positives = 485/669 (72%), Gaps = 22/669 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI Q+++GI +    Q LLGVTGSGKTF++A VI  + RP +V+A
Sbjct: 4   FQLVTRFEPAGDQPEAIRQMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQINRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ELL  L   QY R 
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRELLRRLTSLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+I+P+  +  A R+ +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A++ IK EL  RL  L    +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLMGAIEGIKVELAERLDYLRANNKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTL++Y+P+D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRESGAPPPTLYDYLPDDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G ++EQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVIEQLVRPTGLVDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  EIN       R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ T+E
Sbjct: 423 IRPALTQVDDLLSEINKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD IT S++ AI ET RRR+KQ+  N ++ I P+ V + + +++      +
Sbjct: 543 NLNGRAILYADRITGSMERAIGETQRRRDKQIAFNLENGIIPKGVFKDVADIM------E 596

Query: 741 AATTNISIDAQQLSLSKKKGKA---------------HLKSLRKQMHLAADNLNFEEAAR 785
            AT   S   ++  ++K   ++                ++ L ++M+  A +L FE AA+
Sbjct: 597 GATVPGSRSKKRKGMAKAAEESAKYENELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQ 656

Query: 786 IRDEIKRLK 794
            RDEI +L+
Sbjct: 657 TRDEIGKLR 665


>gi|116748247|ref|YP_844934.1| excinuclease ABC subunit B [Syntrophobacter fumaroxidans MPOB]
 gi|116697311|gb|ABK16499.1| Excinuclease ABC subunit B [Syntrophobacter fumaroxidans MPOB]
          Length = 691

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/663 (56%), Positives = 478/663 (72%), Gaps = 3/663 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           S ++  F +Q+++ P+GDQP AI +L+  I    + Q LLGVTGSGKTFTMA VI+ +++
Sbjct: 22  SSNMVSFSLQSNWPPTGDQPEAIDRLVTAIEKGVREQTLLGVTGSGKTFTMAHVIQRVRK 81

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P++V+APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYI K+SSINE 
Sbjct: 82  PSLVVAPNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPQTDTYIAKDSSINET 141

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ID+MRHSATRSLLER D I+V+SVSCIYG+GS E+Y  M +QLK    + ++++L  LV+
Sbjct: 142 IDKMRHSATRSLLERRDVIIVASVSCIYGLGSPETYQDMQLQLKTNLRISREQVLRKLVE 201

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY+R D    RGTFR  GD +E+FP++ ED A R+  FG++++ I E  PLTG+ +R +
Sbjct: 202 IQYERSDDDFHRGTFRARGDVVEVFPAYEEDRALRIEFFGDEVDSIKEIDPLTGKTVRFL 261

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           +   IY  +HYVT R  L  A+K I+ EL  RL E  +EG+L+EAQRLE+R   DLEML 
Sbjct: 262 QRADIYPGTHYVTSRDNLERAVKAIQFELSERLEEFHREGKLVEAQRLEERTRLDLEMLL 321

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSR+L GR  G  P TL +Y P+D LLF+DESH+++PQI GMYRGD  RK
Sbjct: 322 ELGYCNGIENYSRHLDGRKAGSAPATLVDYFPDDWLLFIDESHISVPQIRGMYRGDRARK 381

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL  YGFRLPS +DNRPL F E+       + VSATPG +EL +    +VEQIIRPTGL
Sbjct: 382 ETLVRYGFRLPSALDNRPLSFHEFEKKLRQAVYVSATPGPYELMKAGSHVVEQIIRPTGL 441

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           VDP +E+R A  QV+D+  +I      G R+L+T LTKRMAEDLTEYL E NIRVRYMHS
Sbjct: 442 VDPRIEVRPADHQVDDLVGQIRRQVAAGRRVLVTTLTKRMAEDLTEYLVELNIRVRYMHS 501

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ERIE++RDLRLG++DVLVGINLLREGLDIPE  LVAILDAD EGFLRS+ SLIQT
Sbjct: 502 DINTVERIELVRDLRLGEYDVLVGINLLREGLDIPEVSLVAILDADNEGFLRSERSLIQT 561

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
            GRAARNVN  VILYA+ +T S++ AI+ET RRR  QLE+N  H I P++V++ I +++ 
Sbjct: 562 CGRAARNVNGSVILYANHVTDSMRRAIEETERRRRIQLEYNLAHGITPRTVEKDITDILA 621

Query: 735 PILLEDA-ATTNISIDAQQLSLSKKKGKA--HLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                DA A  + + +A+    S   G     ++ L K M  AA  L FE AA +RD IK
Sbjct: 622 DYRDRDAPAPPDFASEARAEFESAPAGSPDERIRQLEKAMKEAAAELEFERAAHLRDRIK 681

Query: 792 RLK 794
            L+
Sbjct: 682 FLR 684


>gi|330817751|ref|YP_004361456.1| Excinuclease ABC, B subunit [Burkholderia gladioli BSR3]
 gi|327370144|gb|AEA61500.1| Excinuclease ABC, B subunit [Burkholderia gladioli BSR3]
          Length = 696

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/680 (54%), Positives = 488/680 (71%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK + F    FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  
Sbjct: 13  DESKFVAFDGSPFQLYQPYPPAGDQPTAIETLVEGVEDGLSFQTLLGVTGSGKTFTMANT 72

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 73  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRAGDRIGQRDV 192

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK+EL+ RL     E RL+EAQRLEQR  +
Sbjct: 253 RVRQKIVRFTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHSENRLVEAQRLEQRTRF 312

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYN 372

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L  YGFRLPS +DNRPL+F E+       + VSATP  +E+ +  G   EQ+
Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYEI-RVSGQTAEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A TQV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 432 VRPTGLVDPEIEVRPATTQVDDVLAEINERVKAGERVLITVLTKRMAEQLTEFLADHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K +LYAD +T S++ AIDET RRR KQ+ HN+K  I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGKALLYADRMTDSMRRAIDETERRRAKQIAHNEKLGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYSADEARAELK-EAQQRAKFEDMSEKQLAKEIKRLEKQMVDYAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
           + RD++  L+   +   + D
Sbjct: 671 QTRDQLAVLRQRVFGANVGD 690


>gi|260769050|ref|ZP_05877984.1| excinuclease ABC subunit B [Vibrio furnissii CIP 102972]
 gi|260617080|gb|EEX42265.1| excinuclease ABC subunit B [Vibrio furnissii CIP 102972]
          Length = 676

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/669 (55%), Positives = 486/669 (72%), Gaps = 19/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y PSGDQP AI QLL G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSEYQPSGDQPEAIRQLLDGVDAGLAHQTLLGVTGSGKTFTLANVIAKAQRPTILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++++N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDAAVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG  K R++    +
Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVECISIFDPLTGAIKQRDLPRFTV 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A+++IK EL  R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEHIKVELASRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLVIDESHVTVPQIGAMYKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    I +Q++RPTGL+DP +
Sbjct: 365 YGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSGNDIADQVVRPTGLLDPEL 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGLFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK---EKIMEVID-- 734
           RN+  + ILYAD ITKS++ A+DET RRREKQ  +N+   I PQ++K   + IME+ D  
Sbjct: 545 RNLEGRAILYADNITKSMKKAMDETNRRREKQQAYNEAMGIQPQALKRNVKDIMELGDIT 604

Query: 735 ---------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
                     + L   A T+ S D    +++ ++ +  +  L  QM+  A +L FE AA 
Sbjct: 605 KSRKQRTSKVVPLAKVAETSASYD----TMTPQQLEKEINKLEAQMYKHAQDLEFELAAE 660

Query: 786 IRDEIKRLK 794
            RD+++ L+
Sbjct: 661 KRDQLEALR 669


>gi|76818802|ref|YP_337072.1| excinuclease ABC subunit B [Burkholderia pseudomallei 1710b]
 gi|124381502|ref|YP_001023842.1| excinuclease ABC subunit B [Burkholderia mallei NCTC 10229]
 gi|76583275|gb|ABA52749.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1710b]
 gi|124289522|gb|ABM98791.1| excinuclease ABC, B subunit [Burkholderia mallei NCTC 10229]
          Length = 707

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/680 (54%), Positives = 491/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y PSGDQP AIA L++G+      Q LLGVTGSGKT+TMA  
Sbjct: 24  DESKFVTFEGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANT 83

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 84  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 143

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+
Sbjct: 144 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREV 203

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG
Sbjct: 204 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTG 263

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +
Sbjct: 264 RVRQKIPRFTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRF 323

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 324 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 383

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G   EQ+
Sbjct: 384 GDRARKENLVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVSGQTAEQV 442

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 443 VRPTGLVDPQIEVRPASTQVDDVLSEITERVKANERVLITVLTKRMAEQLTEFLADHGVK 502

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 503 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 562

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N+K  I P+ V ++
Sbjct: 563 RSLIQTIGRAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKR 622

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 623 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 681

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
           + RD++  L+   +   + D
Sbjct: 682 QTRDQLALLRERVFGANVGD 701


>gi|256822136|ref|YP_003146099.1| excinuclease ABC subunit B [Kangiella koreensis DSM 16069]
 gi|256795675|gb|ACV26331.1| excinuclease ABC, B subunit [Kangiella koreensis DSM 16069]
          Length = 662

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/660 (55%), Positives = 484/660 (73%), Gaps = 10/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + P+GDQP AI QLL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 5   FDIHSPFPPAGDQPKAIKQLLEGLEDGLSHQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYV  +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G  +++  M++ LK+GD V+Q+ +L  L + QY R 
Sbjct: 125 SATRALLERRDTIIVASVSAIYGLGDPKAFHSMVMHLKVGDEVDQRFILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + R T+RV GD I+I+P+  E  A R+ +F +++E I  F PLTG+ ++ +  + ++
Sbjct: 185 EFDLQRATYRVRGDLIDIYPAESEKHAIRIELFDDEVETIQTFDPLTGEVLKRLTRVTVF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT R T+  A++ IK +LK RL +  ++ +L+EAQRLEQR+ +D+EM++  G C 
Sbjct: 245 PKSHYVTSRQTILDAIEQIKVDLKERLAQFYEQNKLVEAQRLEQRVKFDIEMMQELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+G  PGEPPP L +Y+P D+L+ +DESHVT+ QI  MY+GD  RK TL  Y
Sbjct: 305 GIENYSRYLSGAQPGEPPPCLLDYLPPDALMLIDESHVTVSQIGAMYKGDRSRKETLVNY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL+FEE+  + P T+ VSATPG +E E+  G IVEQ++RPTGL+DP VE
Sbjct: 365 GFRLPAALDNRPLKFEEFERITPQTVFVSATPGKYE-EENTGQIVEQVVRPTGLIDPEVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI+L  ++  R+L+T LTKRMAEDLT+YL E   RVRY+HS++ T+E
Sbjct: 424 IRPVGTQVDDLLSEIHLRVEKNERVLVTTLTKRMAEDLTDYLSEHGARVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ K ILYAD IT S++ AI ET RRR  Q E+N+KH I P  V +KI +V+D      
Sbjct: 544 NLSGKAILYADRITGSMERAIGETNRRRAIQQEYNEKHGITPIGVSKKITDVMDT----- 598

Query: 741 AATTNISIDAQQLSLSKKKGKA----HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +      A++LS  K K  A     +  + KQM   A NL FE+AA++RDEI++L+ +
Sbjct: 599 GHSKKSRKVAEKLSQYKVKSLADAVKEIAHMEKQMLEHAKNLEFEKAAKMRDEIQKLREA 658


>gi|77360053|ref|YP_339628.1| excinuclease ABC subunit B [Pseudoalteromonas haloplanktis TAC125]
 gi|90111047|sp|Q3IKF4|UVRB_PSEHT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|76874964|emb|CAI86185.1| ATP-dependent DNA excision repair enzyme UvrAC [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 664

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/656 (54%), Positives = 480/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++ + P+GDQP AIAQL +G+ +    Q LLG TG+GKTFTMA +I  + RP I+MA
Sbjct: 5   FQLKSHFKPAGDQPTAIAQLCEGLEAGLAHQTLLGATGTGKTFTMANIINDLNRPTIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYV  +DT+IEK++SINE I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPKNAVEYFVSYYDYYQPEAYVVSSDTFIEKDASINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  +SY +M++ LK+G+ V+Q+++L  L + QY R 
Sbjct: 125 SATKALLERRDTIIVASVSAIYGLGDPKSYMKMMLLLKVGEKVDQRDMLRRLAEIQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGT+RV G+ ++IFP+     A RV MF ++IE +S F PLTG   +++    IY
Sbjct: 185 DVDFSRGTYRVRGEVVDIFPAESSTFAIRVEMFDDEIERLSIFDPLTGAIEKHIVRTTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ I+EELK R  +L    +L+E QR+ QR  YD+EM+   G C 
Sbjct: 245 PKTHYVTPREKILGAIEKIQEELKDRRAQLLSANKLVEEQRVTQRTQYDIEMMRELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PG+PPPTL +Y+P+D+L+ +DESHVT+ QI  MY+GD  RK  L EY
Sbjct: 305 GIENYSRYLSGRTPGDPPPTLLDYLPDDALMIIDESHVTVSQIGAMYKGDRSRKENLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS MDNRPLRFEE+  + P TI VSATPG +EL++C G I EQ+IRPTGL+DP +E
Sbjct: 365 GFRMPSAMDNRPLRFEEFEAISPQTIYVSATPGDFELDRCVGAIAEQVIRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI  + ++G R+L+T LTKRM+EDLT+YL E N++VRY+HS++ T+E
Sbjct: 425 VRPVGDQVDDLLSEIYKSVEKGERVLVTTLTKRMSEDLTDYLSEHNVKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  S+IQT+GRAAR
Sbjct: 485 RVEIIRDLRAGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSARSIIQTVGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++  + ILY D ITKS+  A+DET RRRE Q  +N +H I P S+ +KI++ +D +  E 
Sbjct: 545 HLEGRAILYGDRITKSMAKAMDETARRREIQHAYNIEHGIEPHSLAKKILDSMD-VGEEA 603

Query: 741 AATTNISIDAQQLS--LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               N+ +  ++    LS K+    +K L  +MH  A +L FE+AA +RDEI  L+
Sbjct: 604 GPKDNLRLIRKESKKVLSAKEITVQIKQLDSKMHAYASDLEFEKAASVRDEIHELQ 659


>gi|89900959|ref|YP_523430.1| excinuclease ABC subunit B [Rhodoferax ferrireducens T118]
 gi|89345696|gb|ABD69899.1| excinuclease ABC, B subunit [Rhodoferax ferrireducens T118]
          Length = 710

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/664 (55%), Positives = 485/664 (73%), Gaps = 7/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQP AI QL++G++  E  Q+LLGVTGSGKTFTMA VI  + RPAIV A
Sbjct: 31  FELYQPYPPAGDQPEAINQLVEGVNDGEVFQILLGVTGSGKTFTMANVIARLGRPAIVFA 90

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR 
Sbjct: 91  PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 150

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+S+LER D ++V++VS IYGIG  E+Y +M++ L++GD + Q+++++ LV+ QY+R 
Sbjct: 151 SCTKSVLERRDVVIVATVSAIYGIGQPEAYHKMVMTLRVGDKLGQRDMIAQLVRMQYQRN 210

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD+I+IFP+   ++A RV +F ++IE +  F PLTG+  + +    +Y
Sbjct: 211 DVDFSRGAFRVRGDTIDIFPAEHSEMAIRVELFDDEIESLQLFDPLTGRIRQKIPRFTVY 270

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR  + +A++ IK EL  R+ E   +G+L+EAQR+EQR  +DLEML   G C+
Sbjct: 271 PSSHYVTPREQVLSAVEAIKIELAERIKEFVGQGKLVEAQRIEQRTRFDLEMLSEVGHCK 330

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G  PGEPP TL +Y+P+D+L+F+DESHV I Q   MY GD  RK TL EY
Sbjct: 331 GIENYSRHLSGAAPGEPPATLTDYLPKDALMFLDESHVLIGQFGAMYNGDRSRKTTLVEY 390

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       I VSATP  WE +   G IVEQ++RPTGLVDP VE
Sbjct: 391 GFRLPSALDNRPLKFEEFETRMRQAIFVSATPAQWEKDHA-GKIVEQLVRPTGLVDPEVE 449

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DV  EI +  ++  R+L+T LTKRMAE LT+YL +  ++VRY+HS++ T+E
Sbjct: 450 VRPAVNQVDDVLQEIRIRVEKHERVLITTLTKRMAEQLTDYLSDNGVKVRYLHSDIDTVE 509

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 510 RVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 569

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  + ILYAD +T+S++ AI ET RRR KQ+ HN    I P+S+ +++ ++ID +  E 
Sbjct: 570 NLEGRAILYADKVTESMRKAIGETERRRVKQVTHNLAMGITPRSIVKQVKDLIDGVYSEK 629

Query: 741 AA--TTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A      +  DA Q +    +S+K     +K L K M   A NL FE+AAR+RD++  LK
Sbjct: 630 AGQEAEKLERDAMQRAQVEDMSEKDISREIKRLEKLMMEHARNLEFEKAARVRDQLGILK 689

Query: 795 SSPY 798
              +
Sbjct: 690 EQAF 693


>gi|220904694|ref|YP_002480006.1| excinuclease ABC subunit B [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868993|gb|ACL49328.1| excinuclease ABC, B subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 678

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/665 (54%), Positives = 472/665 (70%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F ++T Y P+GDQP AI +L+  + +    Q+LLGVTGSGKTFTMA VI    RPA+V
Sbjct: 7   TPFSLETAYAPTGDQPGAINELVANLQAGVPAQVLLGVTGSGKTFTMANVIARCNRPALV 66

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY EF+  FPHNAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ ID++
Sbjct: 67  LAPNKTLAAQLYGEFRALFPHNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKL 126

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R D I+V+SVSCIYG+GS E Y++M+V +++G       L++ LV+  Y+
Sbjct: 127 RHAATHALLTRRDVIIVASVSCIYGLGSPEYYAKMVVPVEVGQHFSMDRLITRLVEVHYE 186

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD++EI P++  + A R+  FG+DI+ + E  PLTG+ + +V    
Sbjct: 187 RNDYDFHRGTFRVRGDALEIIPAYHHERALRLEFFGDDIDSMREIDPLTGEVLADVSKTV 246

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SH+V+ +  L  A   I++EL  RL    ++G+L+EAQRLEQR   DLEM+E  G 
Sbjct: 247 IYPASHFVSAQDNLKRAAGDIRDELAERLTLFRQQGKLVEAQRLEQRTQLDLEMIEELGY 306

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENY+R+L GR  GEPP  L  Y PED LLFVDESH+TIPQ+ GMY+GD  RK TL 
Sbjct: 307 CNGIENYTRHLDGRVAGEPPSCLLNYFPEDFLLFVDESHITIPQVGGMYKGDRSRKQTLV 366

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL+F E+  L    + VSATPG +E++Q QGI+ EQIIRPTGLVDP 
Sbjct: 367 DYGFRLPSALDNRPLQFNEFTALLNQVVYVSATPGKYEMDQAQGIVAEQIIRPTGLVDPM 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R  + Q+ED+  E      +G R+L+T LTKRMAEDLTEY     +R RY+HS++ T
Sbjct: 427 VEVRPTKGQMEDLLGECRGCVSRGERVLVTTLTKRMAEDLTEYCCNMGVRARYLHSDIDT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER++IIR LRLG+FDVLVGINLLREGLDIPE  LV ILDADKEGFLRS  SLIQT GRA
Sbjct: 487 LERMQIIRALRLGEFDVLVGINLLREGLDIPEVSLVCILDADKEGFLRSTGSLIQTFGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV  +VILYAD +T S++ A+ ET RRR +Q E+N++H I P S ++ +   +D + +
Sbjct: 547 ARNVQGRVILYADKVTDSMKAAMSETARRRTRQTEYNEEHGITPVSTRKSLESPLDSLYV 606

Query: 739 EDAAT--------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           ED A+         +   DA    L+ +     +  L K+M  AA +L FE+AA++RD I
Sbjct: 607 EDGASRGRGKGRGKSKGQDADASPLTAEDTALLVARLEKEMRQAARDLEFEQAAQLRDRI 666

Query: 791 KRLKS 795
           + L++
Sbjct: 667 RVLRA 671


>gi|15642773|ref|NP_230664.1| excinuclease ABC subunit B [Vibrio cholerae O1 biovar El Tor str.
           N16961]
          Length = 676

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/668 (55%), Positives = 482/668 (72%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   Q P I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQLPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF ++IE IS F PLTG    R++    I
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATP  +EL +  G + EQ++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++  I PQ +K  + ++++   L 
Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D A +    +++ + L+K             ++ +  +  L   M+  A NL FE AA+ 
Sbjct: 602 DIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661

Query: 787 RDEIKRLK 794
           RDEI +L+
Sbjct: 662 RDEIHQLR 669


>gi|307824855|ref|ZP_07655078.1| excinuclease ABC, B subunit [Methylobacter tundripaludum SV96]
 gi|307734213|gb|EFO05067.1| excinuclease ABC, B subunit [Methylobacter tundripaludum SV96]
          Length = 670

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/663 (55%), Positives = 484/663 (73%), Gaps = 11/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI  L++G+   E  Q LLGVTGSGKTFT+A VI  +QRPA++MA
Sbjct: 5   FKLHSRFQPAGDQPTAIQALVEGLSDGEVHQTLLGVTGSGKTFTIANVINQVQRPAMIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP N+VEYFVSYYDYYQPEAYVP +DT+I+K+++INE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENSVEYFVSYYDYYQPEAYVPASDTFIDKDAAINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER+D IVV++VS IYG+G  ESY +M++ L  GD + Q+++L  L + QY R 
Sbjct: 125 SATKALIERDDTIVVATVSAIYGLGEPESYFKMVLHLVKGDMINQRDILRRLAEMQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + R T+RV G+ I++FP+  +  A R+ +F +++E +S F PLTG+ IR +    IY
Sbjct: 185 DIDLRRATYRVRGEVIDVFPAESDSEALRIELFDDEVERLSLFDPLTGEIIRRLARYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  L  A++ IK ELK RL +L    +L+EAQRLEQR  +D+EM+   G C 
Sbjct: 245 PKSHYVTPREQLLEAVEAIKVELKERLEQLRSLDKLVEAQRLEQRTLFDIEMILEVGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR+ GE PPT+F+Y+ +++L+ +DESHV +PQI  MY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRSAGESPPTMFDYLRDNALVIIDESHVAVPQIGAMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+    P  I VSATPG +E E   G+  EQ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLMFNEFELKAPQRIYVSATPGPYEREHS-GVFAEQVVRPTGLLDPVVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EIN       R+L+T LTKRM+EDLTEYL E  +RVRY+HS++ T+E
Sbjct: 424 VRPATTQVDDLLSEINKRVVVKERVLVTTLTKRMSEDLTEYLMEHGVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SL+QTIGRAAR
Sbjct: 484 RVEIIRDLRLGQFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSVVSLVQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D ITKS+Q AIDET RRREKQ + N +H+I P+++ + + +++  + +  
Sbjct: 544 NVNGKAILYGDKITKSMQQAIDETDRRREKQHQFNIEHHIEPKTIFKSVTDIMQ-VSIPG 602

Query: 741 AATT--NISIDA-------QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           A  T  N  +D         + +++ K+    LK L   M+  A NL FE+AA+IRDEIK
Sbjct: 603 AGMTSANKLLDKVAEFPADYKAAMTPKQASKKLKQLEDTMYQHAKNLEFEQAAKIRDEIK 662

Query: 792 RLK 794
            L+
Sbjct: 663 VLQ 665


>gi|258621836|ref|ZP_05716867.1| excinuclease ABC subunit B [Vibrio mimicus VM573]
 gi|262171967|ref|ZP_06039645.1| excinuclease ABC subunit B [Vibrio mimicus MB-451]
 gi|258586067|gb|EEW10785.1| excinuclease ABC subunit B [Vibrio mimicus VM573]
 gi|261893043|gb|EEY39029.1| excinuclease ABC subunit B [Vibrio mimicus MB-451]
          Length = 676

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/668 (54%), Positives = 484/668 (72%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG    R++    I
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLARYTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATPG +EL +  G + +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPGEYELTKSGGEVADQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARVRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N K ILYAD+ITKS++ A+DET RRREKQ  +N++  I PQ +K  + ++++   L 
Sbjct: 545 RNINGKAILYADSITKSMRKAMDETERRREKQHAYNEQLGITPQPLKRSVKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D A +    +++ + L+K             ++ +  +  L   M+  A NL FE AA+ 
Sbjct: 602 DIAKSRKQKNSKVVPLAKVAEESATYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661

Query: 787 RDEIKRLK 794
           RDEI +L+
Sbjct: 662 RDEIHQLR 669


>gi|149924580|ref|ZP_01912936.1| excinuclease ABC subunit B [Plesiocystis pacifica SIR-1]
 gi|149814546|gb|EDM74130.1| excinuclease ABC subunit B [Plesiocystis pacifica SIR-1]
          Length = 722

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/691 (53%), Positives = 486/691 (70%), Gaps = 27/691 (3%)

Query: 128 SWSINNHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183
            W ++N  +        F + +++ P G QP AIA+L+ G+ + +  Q+LLG+TGSGKTF
Sbjct: 27  GWDLDNPVRPTIAADRPFTLVSEFEPRGSQPNAIAELVSGLDNGDADQVLLGITGSGKTF 86

Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243
           T+A VI   QRP +++A NK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAYVP TDT
Sbjct: 87  TIANVIAKTQRPTLILAHNKTLAAQLYGEFKALFPDNAVEYFVSYYDYYQPEAYVPSTDT 146

Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303
           YIEK+S+INEQIDRMRH+AT SLL R D I+V+SVSCI+GIGS E+Y  MI  + +G+ +
Sbjct: 147 YIEKDSNINEQIDRMRHAATFSLLSRRDVIIVASVSCIFGIGSAEAYYGMIAPIAVGEEL 206

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           E+  LL  LV  QY+R D+   RGTFRV GD +E+FP++ +D A RV  FG+++E I E 
Sbjct: 207 ERDVLLRRLVAMQYERNDVDFHRGTFRVRGDVVEVFPAYEDDTAVRVEFFGDEVEAIREI 266

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
            PL G    +++ + I+  SHYVTP   L  A++ I+ EL+ RL EL    RL+EAQRLE
Sbjct: 267 DPLRGVTRGHMKRVTIFPASHYVTPASKLRAAIERIRGELQERLQELRANERLVEAQRLE 326

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
           QR  +DLEMLE  G C  IENYSR+LTGR  G+ PPTL +Y P+D +L VDESHVT+PQ+
Sbjct: 327 QRCMFDLEMLEEMGRCSGIENYSRHLTGREAGQAPPTLLDYFPKDFMLVVDESHVTLPQV 386

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
             MY+GD  RK+TL E+GFRLPS +DNRPL+F+E++      I VSATPG++ELE+  G+
Sbjct: 387 RAMYKGDRARKSTLVEHGFRLPSALDNRPLQFDEFDERIAQAIYVSATPGNYELERTSGV 446

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
           + EQIIRPTGL+DPP+E+R    QV+D+ DEI + A +  R+L+T LTKRMAEDLTEY  
Sbjct: 447 VTEQIIRPTGLLDPPIEMRPTAGQVDDLLDEIRVRADKDERVLVTTLTKRMAEDLTEYYA 506

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +  +RVRY+H++V TLER+ IIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEG
Sbjct: 507 DLGVRVRYLHADVDTLERVAIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEG 566

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           FLR++ SL+QT GRAARNV+ +VI+YAD +T S++ A+DET RRR  Q  +N KH I P+
Sbjct: 567 FLRARRSLVQTCGRAARNVDGRVIMYADRVTDSMRAAMDETERRRTIQSAYNAKHGITPR 626

Query: 724 SVKEKIMEVIDPILLEDAATTNIS---------IDAQQLSLSKKKGKAH----------L 764
           S + KI     P+  E AA  +             A+QL +   + +            +
Sbjct: 627 STRAKIT----PLEQERAAPGSAGGSAGKRGSKAAAKQLPVGLDRARDQDLLPSELPERI 682

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + L ++M   A  L +EEAA +RD I+ L++
Sbjct: 683 RELEQEMRALAKGLRYEEAATLRDRIRVLEA 713


>gi|320196726|gb|EFW71349.1| Excinuclease ABC subunit B [Escherichia coli WV_060327]
          Length = 673

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARCKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|190571138|ref|YP_001975496.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018542|ref|ZP_03334350.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357410|emb|CAQ54844.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995493|gb|EEB56133.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 644

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/655 (56%), Positives = 470/655 (71%), Gaps = 17/655 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI  L+ G++S ++ Q+LLGVTGSGKTFTMA VI    RPA++MA
Sbjct: 3   FQIVTHFQPAGDQPQAIDNLVAGLNSNKRDQVLLGVTGSGKTFTMANVIARTNRPALIMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E + FFPHNAV YF+SYYDYYQPEAY P+TDTYIEK+S INE+ID +R+
Sbjct: 63  HNKTLAAQLYEEMRGFFPHNAVGYFISYYDYYQPEAYSPQTDTYIEKDSLINERIDMLRY 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  SLLER D IVV+SVSCIYG+GS ESY  M + L  GD +   + L++LV  QYKR 
Sbjct: 123 SAICSLLERRDTIVVASVSCIYGLGSPESYLSMTLTLSAGDKIHVNDFLNNLVNLQYKRS 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD I+IFP++ E+ AWR+S+FG++IEEISE   +    IR ++T+ I+
Sbjct: 183 DVRFERGYFRVRGDIIDIFPAYYENKAWRLSLFGDEIEEISEIDAMNSNIIRCIDTVTIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NS+Y T R TL  A++ IK+EL  RL     + +++EA+RLEQR  +D+EM+  TG C+
Sbjct: 243 PNSYYTTSRETLLQAVQLIKKELHERLDYYYSQNKIVEAKRLEQRTNFDIEMMMATGVCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL G   G+PPPTLFEY+P+D +LFVDESHVT+PQI  MY G+  RK  L +Y
Sbjct: 303 GIENYSRYLYGMKAGDPPPTLFEYLPKDVILFVDESHVTVPQIGAMYSGNEARKKKLIDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EEW  +RP TI VSATPG +ELE+     +EQ+IRPTGL DP   
Sbjct: 363 GFRLPSAFDNRPLKLEEWEAIRPQTIYVSATPGKYELEKTNHAFIEQVIRPTGLTDPICT 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+   +QV+DV  E  +  ++G  IL+T LTK+MAE L E++ E +++V Y+HS++  LE
Sbjct: 423 IKPTESQVDDVIHEAQVTIKKGFCILITTLTKKMAEKLAEHMSELSMKVTYLHSDIGALE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII  LR  + DVLVG+NLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RIEIICKLRSKEIDVLVGVNLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +VILYAD IT S+  A+ ET RRR+KQ EHN  HNI P++    I++ I   L E 
Sbjct: 543 NVEGRVILYADKITNSMDRALKETERRRKKQTEHNTLHNIVPKT----IIKPISNTLQEK 598

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               N S D              L SL+KQM   A+NL FEEAA+I+  I+R  +
Sbjct: 599 VVIENFSKD-------------DLNSLKKQMLKHAENLEFEEAAKIKSIIERFNN 640


>gi|329295973|ref|ZP_08253309.1| excinuclease ABC subunit B [Plautia stali symbiont]
          Length = 673

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/662 (56%), Positives = 478/662 (72%), Gaps = 8/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +VMA
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVE+FVSYYDYYQPEAYVP +DT+IEK++++NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEFFVSYYDYYQPEAYVPSSDTFIEKDAAVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+  RV +F  ++E +S F PLTGQ I  +    IY
Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDDIGLRVELFDEEVERLSLFDPLTGQVISVIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK+EL +R   L +  +LLE QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKDELAVRRKVLLENNKLLEEQRIIQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRMRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGNYELEKSGGDVIDQVVRPTGLLDPILE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI    +   R+L+T LTKRMAEDLTEYL E   +VRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRKRVEINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           NVN + ILYAD IT S+  A+ ET RRREKQ  +N++  I PQ + +KI + ++      
Sbjct: 545 NVNGRAILYADKITPSMARAMKETERRREKQQRYNEERGIVPQGLNKKITDTLELGKNVV 604

Query: 735 PILLEDAATTNISIDAQQ--LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
               +    T I+ +A+   L+L+ +  +  +  L  QM   A NL FEEAAR+RD++  
Sbjct: 605 KTRGKGKTATRIAAEAEASYLALTPQAMQKKIHELEGQMQQHAQNLEFEEAARVRDQLHE 664

Query: 793 LK 794
           L+
Sbjct: 665 LR 666


>gi|71281240|ref|YP_269592.1| excinuclease ABC subunit B [Colwellia psychrerythraea 34H]
 gi|90110881|sp|Q480C7|UVRB_COLP3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|71146980|gb|AAZ27453.1| excinuclease ABC, B subunit [Colwellia psychrerythraea 34H]
          Length = 673

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/660 (55%), Positives = 473/660 (71%), Gaps = 10/660 (1%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           ++Y PSGDQP AI QLL+GI S    Q LLGVTGSGKT+T+A VIE + RP +++APNK 
Sbjct: 8   SEYTPSGDQPTAIKQLLEGIESGLAHQTLLGVTGSGKTYTIANVIEKLNRPTMMLAPNKT 67

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
           LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+NE I++MR SAT+
Sbjct: 68  LAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNEHIEQMRLSATK 127

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           +LLER D I+++SVS IYG+G  +SY +M++ +  GD + Q+++L  L + QY R D+  
Sbjct: 128 ALLERRDVIIIASVSAIYGLGDPDSYLKMMLHISRGDIINQRDILRRLAELQYTRNDVAF 187

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            R T+RV GD I+IFP+  + +A RV +F  +IE IS+F PLTGQ  R ++ + +Y  +H
Sbjct: 188 ARATYRVRGDVIDIFPAESDRLALRVELFDEEIERISQFDPLTGQVERTLDRVTVYPKTH 247

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
           Y TP+  +  A+  IK ELK R  +L+   +L+E QRL QR  +D+EM+   G C  IEN
Sbjct: 248 YATPKEKIIAAVDKIKIELKHRSQQLKDNNKLVEEQRLTQRTQFDIEMMTELGYCSGIEN 307

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
           YSRYL+GR  G  PPTLF+Y+P+D LL +DESHVT+PQI  MY+GD  RK  L EYGFRL
Sbjct: 308 YSRYLSGREEGGAPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKENLVEYGFRL 367

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           PS +DNRP++FEE+  + P TI VSATP  +ELE+C   I EQ++RPTGL+DP +E+R  
Sbjct: 368 PSALDNRPMKFEEFEAISPQTIYVSATPSKFELEKCGSDIAEQVVRPTGLLDPEIEVRPV 427

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
            TQV+D+  EIN       R+L T LTKRMAEDLT+YLY+  I+ RY+HS+V T+ER+EI
Sbjct: 428 ETQVDDLLSEINKRLPLDERVLATTLTKRMAEDLTDYLYDHGIKARYLHSDVDTVERVEI 487

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           IRD RLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAARN+N 
Sbjct: 488 IRDFRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAARNLNG 547

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA--- 741
           + ILY D IT S++ AIDET RRR KQ ++N  +NI PQ V  +I +V+      DA   
Sbjct: 548 RAILYGDRITGSMRRAIDETERRRVKQHQYNLDNNITPQGVVRRITDVMGVGSYSDAKSL 607

Query: 742 -----ATTNISID--AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                A TN  I+  A++  L+  +    +  L K M   A NL FE+AA +RD+I +L+
Sbjct: 608 DKVAEANTNYHINQQAEEPLLTTSQIDTKIVELEKLMQGHAQNLEFEQAAAMRDKIAKLR 667


>gi|325518377|gb|EGC98099.1| excinuclease ABC subunit B [Burkholderia sp. TJI49]
          Length = 696

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  
Sbjct: 13  DESKFVTFEGSPFQLYQPYPPAGDQPTAIDTLVEGVEDGLAFQTLLGVTGSGKTFTMANT 72

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 73  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+
Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQREV 192

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG
Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLQLFDPLTG 252

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IKEEL+ RL    ++G+L+EAQRLEQR  +
Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHRDGKLVEAQRLEQRTRF 312

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G + EQ+
Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSATPADYE-QRVTGQVAEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A +QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLAEINARVKAGERVLITVLTKRMAEQLTEFLADHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYAD +T S++ AI ET RRR KQ+ +N++  I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGKAILYADNMTDSMKRAIGETERRRAKQIAYNEQMGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
             RD++  L+   +   + D
Sbjct: 671 ATRDQLALLRERVFGANVGD 690


>gi|220917778|ref|YP_002493082.1| excinuclease ABC, B subunit [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955632|gb|ACL66016.1| excinuclease ABC, B subunit [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 699

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/662 (54%), Positives = 473/662 (71%), Gaps = 17/662 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q+ + P+GDQP AI +L  G+   E+ Q+LLGVTGSGKTFT+A V+  ++RP +V+A
Sbjct: 3   FDLQSAFQPTGDQPRAITELTDGLRRGERHQVLLGVTGSGKTFTVANVVAEVKRPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK  FP  AV YFVSYYDYYQPEAYVP TDTYIEK+SSIN++IDRMRH
Sbjct: 63  HNKTLAAQLYAEFKELFPTAAVHYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDRMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL RND ++V+SVSCIYG+G+ E+Y  ++ +L+ G    +   + SL+  QY+R 
Sbjct: 123 AATHALLTRNDVLIVASVSCIYGLGTAEAYHGLLQRLERGQEFLRDRFIRSLIDIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+IE+FP + ED A R+  FG+ +E I EF PL G  +  ++ + I+
Sbjct: 183 DLDFHRGTFRVRGDTIEVFPPYEEDRAVRIEFFGDVVESIHEFDPLRGATLAELDKVAIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHYV+       A+  ++EEL+ RL EL+   +L+EAQRLEQR  +DLEMLE  G C 
Sbjct: 243 PNSHYVSAPEVRARAIAGVREELRERLGELKAANKLVEAQRLEQRTMFDLEMLEQMGFCP 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  G+PPP L +Y PED LL +DESH T+PQI  MYRGD  RK TL E+
Sbjct: 303 GIENYSRWLSGRKAGDPPPCLLDYFPEDFLLVIDESHQTVPQIGSMYRGDRSRKETLVEF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L    I VSATP ++ELEQ QG++VEQ+IRPTGLVDP +E
Sbjct: 363 GFRLPSALDNRPLKFEEFQALVRQAIYVSATPAAYELEQAQGVVVEQLIRPTGLVDPHIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   +QV+D+  E+   A+ G R+L+T LTKRMAEDLTEY  +  +R RY+HS++ TLE
Sbjct: 423 VRPVGSQVDDLLGEVRKRAEAGERVLVTTLTKRMAEDLTEYFTDVGVRCRYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  +IRDLR G+FDVL+GINLLREGLDIPE  LVA+LDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RSAVIRDLRRGEFDVLIGINLLREGLDIPEVSLVAVLDADKEGFLRSAVSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +V+LYAD IT S++ AIDET RRRE Q  +N +H I P +VK  I          D
Sbjct: 543 NVNGRVLLYADAITASMRQAIDETGRRREIQERYNAEHGITPTTVKRNI---------SD 593

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                +  D   + L+ ++G  +        + +L ++M  AA  L FE+AA++RD ++ 
Sbjct: 594 LGMAVVEADYVTVPLAAEEGAEYRPEQLPEIVAALEREMQDAARALEFEKAAQLRDRVQA 653

Query: 793 LK 794
           LK
Sbjct: 654 LK 655


>gi|148977620|ref|ZP_01814196.1| excinuclease ABC subunit B [Vibrionales bacterium SWAT-3]
 gi|145963135|gb|EDK28403.1| excinuclease ABC subunit B [Vibrionales bacterium SWAT-3]
          Length = 676

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/669 (54%), Positives = 487/669 (72%), Gaps = 17/669 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + +DY PSGDQP AI QLL G+ S    Q LLGVTGSGKTFT+A VI   QRPAI++
Sbjct: 4   LFDLVSDYSPSGDQPTAITQLLDGLDSGLAHQTLLGVTGSGKTFTLANVISESQRPAILL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR
Sbjct: 64  APNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER D I+V+SVS IYG+G  +SY +M++ L  G+ ++Q+++L  L + QY R
Sbjct: 124 LSATKALLERKDAIIVASVSAIYGLGDPKSYLKMMLHLSRGEVMDQRDILRRLAELQYSR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIK 378
            D+   RG FRV G+ I+IFP+  +  A R+ MF ++++ IS F PLTG  K R++    
Sbjct: 184 NDVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEVDCISIFDPLTGAVKQRDLPRFT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A++ IK+EL+ R   L+   +LLE QR+ QR  +D+EM+   G 
Sbjct: 244 VYPKTHYVTPREKILEAIENIKDELRDRAQYLKDNNKLLEEQRISQRTQFDIEMMTELGF 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GE PPTLF+Y+P+D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAEGEAPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKETLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPS +DNRP++F+E+  + P TI VSATPG++E+E+  G I +Q++RPTGL+DP 
Sbjct: 364 EFGFRLPSALDNRPMKFDEFESIAPQTIFVSATPGNYEIEKSDGEIADQVVRPTGLLDPI 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI + + +  R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ T
Sbjct: 424 IEVRPVATQVDDLLSEIRIRSAKEERVLVTTLTKRMAEDLTEYLSEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  K ILY D+ITKS++ AIDET RRREKQ  +N++  I PQ++K  I ++++   L
Sbjct: 544 ARNLEGKAILYGDSITKSMKKAIDETGRRREKQQAYNEEQGITPQALKRNIKDIME---L 600

Query: 739 EDAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAAR 785
            D   +     ++Q+ LSK             ++    +  L   M+  A NL FE AA+
Sbjct: 601 GDITKSKQKRQSKQVPLSKVAEPSESYAVLTPQQLDKEISKLEAAMYQHAQNLEFELAAQ 660

Query: 786 IRDEIKRLK 794
            RDEI++L+
Sbjct: 661 KRDEIEQLR 669


>gi|324018557|gb|EGB87776.1| excinuclease ABC subunit B [Escherichia coli MS 117-3]
          Length = 673

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/664 (56%), Positives = 482/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + ++PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFNPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|262368546|ref|ZP_06061875.1| excinuclease ABC [Acinetobacter johnsonii SH046]
 gi|262316224|gb|EEY97262.1| excinuclease ABC [Acinetobacter johnsonii SH046]
          Length = 673

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/664 (56%), Positives = 475/664 (71%), Gaps = 10/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T+Y P+GDQP AI +L+ GI      QLLLGVTGSGKT+TMA VI   QRP IVMA
Sbjct: 7   FDLVTNYQPAGDQPQAIEKLVAGIEKGYHDQLLLGVTGSGKTYTMANVIARTQRPTIVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR 
Sbjct: 67  HNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAINDHIDQMRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D I+V+SVS IYG+G   +Y  M++ +  GD + + +++  LV+ QY R 
Sbjct: 127 SATRSLLERRDAIIVASVSAIYGLGDPNAYMSMLLHIVQGDRIARDDIIRRLVEMQYSRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++  +RGT+R+ G+ I+IFP+  +  A R+ +F ++++ I  F PLTG+ +R V  + IY
Sbjct: 187 ELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKLVRKVPRVTIY 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  L  A+  I+EELK RL       +LLEAQR+EQR  YDLEM++  G   
Sbjct: 247 PKSHYVTPKDNLERAIGTIREELKERLGFFRAHDKLLEAQRIEQRTRYDLEMMQQLGYTN 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GE PPTLF+Y+P+D+LL +DESHVT+PQI  MY+GD  RK  L  Y
Sbjct: 307 GIENYSRHLSGRPAGEAPPTLFDYVPDDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEEW  + P TI VSATP  +ELE+ +  I EQ++RPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPMQFEEWERITPATIYVSATPAKYELEKAEQ-IAEQVVRPTGLIDPEIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EIN+      R+L+T LTKRMAEDL+ YL E  ++V Y+HS++ T+E
Sbjct: 426 VRPVLTQVDDVLSEINIRKDLDERVLVTTLTKRMAEDLSSYLKEYGVKVAYLHSDIDTVE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II DLR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 486 RVKIIHDLRSGVYDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--ILL 738
           NV  K ILY D IT S+Q AIDET RRREKQ+  N+ H I P+S   +  + ID   +L 
Sbjct: 546 NVKGKAILYGDRITDSMQKAIDETARRREKQMAFNELHGIIPRSTIRQNKKDIDTGEVLT 605

Query: 739 EDAATTNI-------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           +D   + I       S D Q L    K    HL  L K+M  A+  L FE+AAR+RDEI 
Sbjct: 606 DDQVESGITDQHQTLSADEQHLLSDPKLLAKHLSKLEKEMLKASKELQFEQAARLRDEIL 665

Query: 792 RLKS 795
           RLK+
Sbjct: 666 RLKA 669


>gi|53717211|ref|YP_105572.1| excinuclease ABC subunit B [Burkholderia mallei ATCC 23344]
 gi|53721391|ref|YP_110376.1| excinuclease ABC subunit B [Burkholderia pseudomallei K96243]
 gi|121597246|ref|YP_991333.1| excinuclease ABC subunit B [Burkholderia mallei SAVP1]
 gi|126444347|ref|YP_001061605.1| excinuclease ABC subunit B [Burkholderia pseudomallei 668]
 gi|126456150|ref|YP_001074544.1| excinuclease ABC subunit B [Burkholderia pseudomallei 1106a]
 gi|166999231|ref|ZP_02265072.1| excinuclease ABC, B subunit [Burkholderia mallei PRL-20]
 gi|167722431|ref|ZP_02405667.1| excinuclease ABC subunit B [Burkholderia pseudomallei DM98]
 gi|167741413|ref|ZP_02414187.1| excinuclease ABC subunit B [Burkholderia pseudomallei 14]
 gi|167818595|ref|ZP_02450275.1| excinuclease ABC subunit B [Burkholderia pseudomallei 91]
 gi|167826973|ref|ZP_02458444.1| excinuclease ABC subunit B [Burkholderia pseudomallei 9]
 gi|167848488|ref|ZP_02473996.1| excinuclease ABC subunit B [Burkholderia pseudomallei B7210]
 gi|167905424|ref|ZP_02492629.1| excinuclease ABC subunit B [Burkholderia pseudomallei NCTC 13177]
 gi|167913717|ref|ZP_02500808.1| excinuclease ABC subunit B [Burkholderia pseudomallei 112]
 gi|167921658|ref|ZP_02508749.1| excinuclease ABC subunit B [Burkholderia pseudomallei BCC215]
 gi|226199184|ref|ZP_03794745.1| excinuclease ABC, B subunit [Burkholderia pseudomallei Pakistan 9]
 gi|237510637|ref|ZP_04523352.1| excinuclease ABC, B subunit [Burkholderia pseudomallei MSHR346]
 gi|242313742|ref|ZP_04812759.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1106b]
 gi|254174417|ref|ZP_04881079.1| excinuclease ABC, B subunit [Burkholderia mallei ATCC 10399]
 gi|254187176|ref|ZP_04893690.1| excinuclease ABC, B subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|254198958|ref|ZP_04905376.1| excinuclease ABC, B subunit [Burkholderia pseudomallei S13]
 gi|254200366|ref|ZP_04906731.1| excinuclease ABC, B subunit [Burkholderia mallei FMH]
 gi|254204391|ref|ZP_04910744.1| excinuclease ABC, B subunit [Burkholderia mallei JHU]
 gi|254264587|ref|ZP_04955452.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1710a]
 gi|254355744|ref|ZP_04972024.1| excinuclease ABC, B subunit [Burkholderia mallei 2002721280]
 gi|262192882|ref|YP_001078108.2| excinuclease ABC subunit B [Burkholderia mallei NCTC 10247]
 gi|81823801|sp|Q62CK6|UVRB_BURMA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|81824589|sp|Q63NE3|UVRB_BURPS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|52211805|emb|CAH37804.1| excinuclease ABC subunit B [Burkholderia pseudomallei K96243]
 gi|52423181|gb|AAU46751.1| excinuclease ABC, B subunit [Burkholderia mallei ATCC 23344]
 gi|121225044|gb|ABM48575.1| excinuclease ABC, B subunit [Burkholderia mallei SAVP1]
 gi|126223838|gb|ABN87343.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 668]
 gi|126229918|gb|ABN93331.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1106a]
 gi|147747978|gb|EDK55053.1| excinuclease ABC, B subunit [Burkholderia mallei FMH]
 gi|147753977|gb|EDK61041.1| excinuclease ABC, B subunit [Burkholderia mallei JHU]
 gi|148023837|gb|EDK82899.1| excinuclease ABC, B subunit [Burkholderia mallei 2002721280]
 gi|157934858|gb|EDO90528.1| excinuclease ABC, B subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|160695463|gb|EDP85433.1| excinuclease ABC, B subunit [Burkholderia mallei ATCC 10399]
 gi|169657130|gb|EDS88524.1| excinuclease ABC, B subunit [Burkholderia pseudomallei S13]
 gi|225928783|gb|EEH24809.1| excinuclease ABC, B subunit [Burkholderia pseudomallei Pakistan 9]
 gi|235002842|gb|EEP52266.1| excinuclease ABC, B subunit [Burkholderia pseudomallei MSHR346]
 gi|242136981|gb|EES23384.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1106b]
 gi|243064546|gb|EES46732.1| excinuclease ABC, B subunit [Burkholderia mallei PRL-20]
 gi|254215589|gb|EET04974.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1710a]
 gi|261834989|gb|ABO02091.2| excinuclease ABC, B subunit [Burkholderia mallei NCTC 10247]
          Length = 696

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/680 (54%), Positives = 491/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y PSGDQP AIA L++G+      Q LLGVTGSGKT+TMA  
Sbjct: 13  DESKFVTFEGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANT 72

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 73  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+
Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREV 192

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG
Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTG 252

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +
Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRF 312

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G   EQ+
Sbjct: 373 GDRARKENLVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVSGQTAEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 432 VRPTGLVDPQIEVRPASTQVDDVLSEITERVKANERVLITVLTKRMAEQLTEFLADHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N+K  I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
           + RD++  L+   +   + D
Sbjct: 671 QTRDQLALLRERVFGANVGD 690


>gi|261211944|ref|ZP_05926230.1| excinuclease ABC subunit B [Vibrio sp. RC341]
 gi|260838552|gb|EEX65203.1| excinuclease ABC subunit B [Vibrio sp. RC341]
          Length = 676

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/668 (54%), Positives = 484/668 (72%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ S    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLDSGLAHQTLLGVTGSGKTFTLANVIATAQRPTILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG    R++    +
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVVTSRDLARFTV 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKHELQIRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ G+PPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRSEGQPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATPG +EL +  G + +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPGEYELTKSGGEVADQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARVRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N K ILYAD+ITKS++ A+DET RRREKQ  +N++  I PQ +K  + ++++   L 
Sbjct: 545 RNINGKAILYADSITKSMRKAMDETERRREKQHAYNEQLGITPQPLKRSVKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D A +    +++ + L+K             ++ +  +  L   M+  A NL FE AA+ 
Sbjct: 602 DIAKSRKPKNSKVVPLAKVAEESAVYQALTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661

Query: 787 RDEIKRLK 794
           RDEI +L+
Sbjct: 662 RDEIHQLR 669


>gi|254467884|ref|ZP_05081290.1| excinuclease ABC, B subunit [beta proteobacterium KB13]
 gi|207086694|gb|EDZ63977.1| excinuclease ABC, B subunit [beta proteobacterium KB13]
          Length = 682

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/669 (55%), Positives = 485/669 (72%), Gaps = 8/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++   + PSGDQP AI QL+ GI+  EK Q LLGVTGSGKTFT+A VI    RPAIVMA
Sbjct: 14  YELALPFEPSGDQPKAIEQLIDGINRNEKFQTLLGVTGSGKTFTIANVIAQTGRPAIVMA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEFK FFP+N+VEYFVSYYDYYQPEAYVP  D +IEK+SSIN+ I++MR 
Sbjct: 74  PNKTLAAQLYSEFKEFFPNNSVEYFVSYYDYYQPEAYVPARDLFIEKDSSINDHIEQMRL 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER+D I+++SVS IYGIG    Y  M++ ++ G+ + Q+ ++  LV  QY R 
Sbjct: 134 SATKALLERDDSIIIASVSAIYGIGDPVDYQGMVLHIQSGEKILQRNIVQRLVSMQYDRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD I+IFP+   + A R+SMF +++E ++ F PLTGQ    ++   +Y
Sbjct: 194 DFDFARGTFRVRGDVIDIFPAENSETALRISMFDDEVESLTLFDPLTGQLFNKIKRFTVY 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A++ IK EL  R+    KE RL+EAQR+EQR  +D+EML   G C+
Sbjct: 254 PSSHYVTPRQTVVNAIEKIKVELHDRVNFYLKEKRLVEAQRIEQRTKFDIEMLNEIGFCK 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGE PPTL +Y+P+++L+F DESHVTIPQ+ GMY+GD  RK  L ++
Sbjct: 314 GIENYSRHLSGRGPGEAPPTLIDYLPDNTLMFFDESHVTIPQVGGMYKGDRARKENLVDF 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+FEE+  L    + VSATP  +E ++   IIVEQ+ RPTGLVDP +E
Sbjct: 374 GFRLPSAMDNRPLKFEEFENLMKQCVFVSATPADYE-DKHSKIIVEQVARPTGLVDPAIE 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +  A +QV+ +  EI    +Q  R+L+T LTKRMAEDLT+YL E  I+V+Y+HS++ T+E
Sbjct: 433 VYPADSQVDHLLGEIKKTIEQENRVLVTTLTKRMAEDLTDYLIENGIKVKYLHSDIDTVE 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRL +FDVLVGINLLREGLDIPE GLVA+LDADKEGFLRS+ SLIQT GRAAR
Sbjct: 493 RVEIIRDLRLKEFDVLVGINLLREGLDIPEVGLVAVLDADKEGFLRSERSLIQTAGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ +VI YA+T TKS++ AI E TRRRE+Q+ +N ++NI P  V++KI ++I+  +  D
Sbjct: 553 NLDGRVIFYANTETKSMKSAIKEMTRRRERQIAYNTENNITPAGVRKKIKDIIEKEI--D 610

Query: 741 AATTNISIDAQQL-----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             +  IS   ++       L++ K    +  L K M   + NL FE+AA IRDEIK LK 
Sbjct: 611 TESFKISQSERKKYRKYEDLTEPKLIKEISKLEKSMQKFSKNLEFEKAAEIRDEIKFLKI 670

Query: 796 SPYFQGLDD 804
             Y   L D
Sbjct: 671 KVYGPNLKD 679


>gi|309701055|emb|CBJ00353.1| UvrABC system protein B (excinuclease ABC subunit B) [Escherichia
           coli ETEC H10407]
          Length = 673

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGVMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|167897040|ref|ZP_02484442.1| excinuclease ABC subunit B [Burkholderia pseudomallei 7894]
          Length = 696

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/680 (54%), Positives = 491/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y PSGDQP AIA L++G+      Q LLGVTGSGKT+TMA  
Sbjct: 13  DESKFVTFEGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANT 72

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 73  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+
Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREV 192

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG
Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLRLFDPLTG 252

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +
Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRF 312

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G   EQ+
Sbjct: 373 GDRARKENLVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVSGQTAEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 432 VRPTGLVDPQIEVRPASTQVDDVLSEITERVKANERVLITVLTKRMAEQLTEFLADHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N+K  I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
           + RD++  L+   +   + D
Sbjct: 671 QTRDQLALLRERVFGANVGD 690


>gi|206560662|ref|YP_002231427.1| excinuclease ABC subunit B [Burkholderia cenocepacia J2315]
 gi|198036704|emb|CAR52603.1| excinuclease ABC subunit B [Burkholderia cenocepacia J2315]
          Length = 696

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/680 (54%), Positives = 491/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  
Sbjct: 13  DESKFVTFEGSPFQLYQPYPPAGDQPTAIDTLVEGVGDGLAFQTLLGVTGSGKTFTMANT 72

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 73  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQRDV 192

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK+EL+ RL    +EG+L+EAQRLEQR  +
Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHREGKLVEAQRLEQRTRF 312

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PG+PPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGDPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ+
Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSATPADYE-KRVTGQIAEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A +QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLTEINARVKAGERVLITVLTKRMAEQLTEFLADHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYAD +T+S++ AI ET RRR KQ+ +N+K  I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGKAILYADNMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
             RD++  L+   +   + D
Sbjct: 671 ATRDQLAVLRERVFGANVGD 690


>gi|15800530|ref|NP_286542.1| excinuclease ABC subunit B [Escherichia coli O157:H7 EDL933]
 gi|15830111|ref|NP_308884.1| excinuclease ABC subunit B [Escherichia coli O157:H7 str. Sakai]
 gi|16128747|ref|NP_415300.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli str. K-12 substr. MG1655]
 gi|74311323|ref|YP_309742.1| excinuclease ABC subunit B [Shigella sonnei Ss046]
 gi|82543226|ref|YP_407173.1| excinuclease ABC subunit B [Shigella boydii Sb227]
 gi|89107630|ref|AP_001410.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli str. K-12 substr. W3110]
 gi|91209808|ref|YP_539794.1| excinuclease ABC subunit B [Escherichia coli UTI89]
 gi|117622962|ref|YP_851875.1| excinuclease ABC subunit B [Escherichia coli APEC O1]
 gi|157155274|ref|YP_001461967.1| excinuclease ABC subunit B [Escherichia coli E24377A]
 gi|157160254|ref|YP_001457572.1| excinuclease ABC subunit B [Escherichia coli HS]
 gi|168757121|ref|ZP_02782128.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4401]
 gi|168764319|ref|ZP_02789326.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4501]
 gi|168767278|ref|ZP_02792285.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4486]
 gi|168779321|ref|ZP_02804328.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4076]
 gi|168786991|ref|ZP_02811998.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC869]
 gi|168799949|ref|ZP_02824956.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC508]
 gi|170020865|ref|YP_001725819.1| excinuclease ABC subunit B [Escherichia coli ATCC 8739]
 gi|170080438|ref|YP_001729758.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli str. K-12 substr. DH10B]
 gi|170682296|ref|YP_001742882.1| excinuclease ABC subunit B [Escherichia coli SMS-3-5]
 gi|187734131|ref|YP_001881035.1| excinuclease ABC subunit B [Shigella boydii CDC 3083-94]
 gi|188493976|ref|ZP_03001246.1| excinuclease ABC, B subunit [Escherichia coli 53638]
 gi|191169290|ref|ZP_03031040.1| excinuclease ABC, B subunit [Escherichia coli B7A]
 gi|193064410|ref|ZP_03045491.1| excinuclease ABC, B subunit [Escherichia coli E22]
 gi|193069360|ref|ZP_03050315.1| excinuclease ABC, B subunit [Escherichia coli E110019]
 gi|194428179|ref|ZP_03060722.1| excinuclease ABC, B subunit [Escherichia coli B171]
 gi|194438379|ref|ZP_03070469.1| excinuclease ABC, B subunit [Escherichia coli 101-1]
 gi|195936818|ref|ZP_03082200.1| excinuclease ABC subunit B [Escherichia coli O157:H7 str. EC4024]
 gi|208815343|ref|ZP_03256522.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208822169|ref|ZP_03262488.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209398352|ref|YP_002269448.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4115]
 gi|209918024|ref|YP_002292108.1| excinuclease ABC subunit B [Escherichia coli SE11]
 gi|215485867|ref|YP_002328298.1| excinuclease ABC subunit B [Escherichia coli O127:H6 str. E2348/69]
 gi|217324415|ref|ZP_03440499.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. TW14588]
 gi|218553362|ref|YP_002386275.1| excinuclease ABC subunit B [Escherichia coli IAI1]
 gi|218557684|ref|YP_002390597.1| excinuclease ABC subunit B [Escherichia coli S88]
 gi|218694252|ref|YP_002401919.1| excinuclease ABC subunit B [Escherichia coli 55989]
 gi|218704156|ref|YP_002411675.1| excinuclease ABC subunit B [Escherichia coli UMN026]
 gi|238900038|ref|YP_002925834.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli BW2952]
 gi|253774218|ref|YP_003037049.1| excinuclease ABC subunit B [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254160856|ref|YP_003043964.1| excinuclease ABC subunit B [Escherichia coli B str. REL606]
 gi|254791973|ref|YP_003076810.1| excinuclease ABC subunit B [Escherichia coli O157:H7 str. TW14359]
 gi|256021152|ref|ZP_05435017.1| excinuclease ABC subunit B [Shigella sp. D9]
 gi|256023626|ref|ZP_05437491.1| excinuclease ABC subunit B [Escherichia sp. 4_1_40B]
 gi|260843021|ref|YP_003220799.1| excinuclease UvrABC subunit UvrB [Escherichia coli O103:H2 str.
           12009]
 gi|260854070|ref|YP_003227961.1| excinuclease UvrABC subunit UvrB [Escherichia coli O26:H11 str.
           11368]
 gi|260866946|ref|YP_003233348.1| excinuclease UvrABC subunit UvrB [Escherichia coli O111:H- str.
           11128]
 gi|261225426|ref|ZP_05939707.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258605|ref|ZP_05951138.1| excinuclease UvrABC subunit UvrB [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281776|ref|YP_003498594.1| UvrABC system protein B [Escherichia coli O55:H7 str. CB9615]
 gi|293404080|ref|ZP_06648074.1| excinuclease ABC subunit B [Escherichia coli FVEC1412]
 gi|293409157|ref|ZP_06652733.1| excinuclease ABC [Escherichia coli B354]
 gi|293414059|ref|ZP_06656708.1| excinuclease ABC [Escherichia coli B185]
 gi|293433040|ref|ZP_06661468.1| excinuclease ABC [Escherichia coli B088]
 gi|298379861|ref|ZP_06989466.1| UvrABC system protein B [Escherichia coli FVEC1302]
 gi|300816423|ref|ZP_07096645.1| excinuclease ABC subunit B [Escherichia coli MS 107-1]
 gi|300822938|ref|ZP_07103073.1| excinuclease ABC subunit B [Escherichia coli MS 119-7]
 gi|300898267|ref|ZP_07116618.1| excinuclease ABC subunit B [Escherichia coli MS 198-1]
 gi|300907106|ref|ZP_07124772.1| excinuclease ABC subunit B [Escherichia coli MS 84-1]
 gi|300920026|ref|ZP_07136485.1| excinuclease ABC subunit B [Escherichia coli MS 115-1]
 gi|300922802|ref|ZP_07138889.1| excinuclease ABC subunit B [Escherichia coli MS 182-1]
 gi|300929419|ref|ZP_07144888.1| excinuclease ABC subunit B [Escherichia coli MS 187-1]
 gi|300947141|ref|ZP_07161355.1| excinuclease ABC subunit B [Escherichia coli MS 116-1]
 gi|300957724|ref|ZP_07169912.1| excinuclease ABC subunit B [Escherichia coli MS 175-1]
 gi|301020730|ref|ZP_07184798.1| excinuclease ABC subunit B [Escherichia coli MS 69-1]
 gi|301024502|ref|ZP_07188178.1| excinuclease ABC subunit B [Escherichia coli MS 196-1]
 gi|301327971|ref|ZP_07221136.1| excinuclease ABC subunit B [Escherichia coli MS 78-1]
 gi|301646208|ref|ZP_07246104.1| excinuclease ABC subunit B [Escherichia coli MS 146-1]
 gi|306812820|ref|ZP_07447013.1| excinuclease ABC subunit B [Escherichia coli NC101]
 gi|307137402|ref|ZP_07496758.1| excinuclease ABC subunit B [Escherichia coli H736]
 gi|307313811|ref|ZP_07593428.1| excinuclease ABC, B subunit [Escherichia coli W]
 gi|309797956|ref|ZP_07692335.1| excinuclease ABC subunit B [Escherichia coli MS 145-7]
 gi|312967823|ref|ZP_07782036.1| excinuclease ABC, B subunit [Escherichia coli 2362-75]
 gi|312970853|ref|ZP_07785032.1| excinuclease ABC, B subunit [Escherichia coli 1827-70]
 gi|331641292|ref|ZP_08342427.1| excinuclease ABC subunit B [Escherichia coli H736]
 gi|331645996|ref|ZP_08347099.1| excinuclease ABC subunit B [Escherichia coli M605]
 gi|331651782|ref|ZP_08352801.1| excinuclease ABC subunit B [Escherichia coli M718]
 gi|331662134|ref|ZP_08363057.1| excinuclease ABC subunit B [Escherichia coli TA143]
 gi|331667142|ref|ZP_08368007.1| excinuclease ABC subunit B [Escherichia coli TA271]
 gi|331672291|ref|ZP_08373082.1| excinuclease ABC subunit B [Escherichia coli TA280]
 gi|331676513|ref|ZP_08377209.1| excinuclease ABC subunit B [Escherichia coli H591]
 gi|331682286|ref|ZP_08382905.1| excinuclease ABC subunit B [Escherichia coli H299]
 gi|332282378|ref|ZP_08394791.1| excision nuclease subunit B [Shigella sp. D9]
 gi|67474768|sp|P0A8F8|UVRB_ECOLI RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|67474771|sp|P0A8F9|UVRB_ECO57 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|90111050|sp|Q324B3|UVRB_SHIBS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|90111052|sp|Q3Z405|UVRB_SHISS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|122424523|sp|Q1REF1|UVRB_ECOUT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189037965|sp|A7ZJI8|UVRB_ECO24 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189037966|sp|A7ZY35|UVRB_ECOHS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189037967|sp|A1A921|UVRB_ECOK1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189037968|sp|B1IXI9|UVRB_ECOLC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226695563|sp|B7MGN7|UVRB_ECO45 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226695565|sp|B7M751|UVRB_ECO8A RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226695566|sp|B7NA78|UVRB_ECOLU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226695567|sp|B1LM70|UVRB_ECOSM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226698334|sp|B5YRL8|UVRB_ECO5E RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226698335|sp|B6I7T4|UVRB_ECOSE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|229557961|sp|B1X7A9|UVRB_ECODH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238691698|sp|B2TVF1|UVRB_SHIB3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|254764905|sp|B7ULX6|UVRB_ECO27 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|254764906|sp|B7LC61|UVRB_ECO55 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|259710324|sp|C4ZXV1|UVRB_ECOBW RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|12513768|gb|AAG55150.1|AE005259_1 DNA repair; excision nuclease subunit B [Escherichia coli O157:H7
           str. EDL933]
 gi|43286|emb|CAA27357.1| unnamed protein product [Escherichia coli]
 gi|1786996|gb|AAC73866.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli str. K-12 substr. MG1655]
 gi|13360316|dbj|BAB34280.1| excision nuclease subunit B [Escherichia coli O157:H7 str. Sakai]
 gi|73854800|gb|AAZ87507.1| DNA repair excision nuclease subunit B [Shigella sonnei Ss046]
 gi|81244637|gb|ABB65345.1| excision nuclease subunit B [Shigella boydii Sb227]
 gi|85674762|dbj|BAA35437.2| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli str. K12 substr. W3110]
 gi|91071382|gb|ABE06263.1| excision nuclease subunit B [Escherichia coli UTI89]
 gi|115512086|gb|ABJ00161.1| excision nuclease subunit B [Escherichia coli APEC O1]
 gi|157065934|gb|ABV05189.1| excinuclease ABC, B subunit [Escherichia coli HS]
 gi|157077304|gb|ABV17012.1| excinuclease ABC, B subunit [Escherichia coli E24377A]
 gi|169755793|gb|ACA78492.1| excinuclease ABC, B subunit [Escherichia coli ATCC 8739]
 gi|169888273|gb|ACB01980.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli str. K-12 substr. DH10B]
 gi|170520014|gb|ACB18192.1| excinuclease ABC, B subunit [Escherichia coli SMS-3-5]
 gi|187431123|gb|ACD10397.1| excinuclease ABC, B subunit [Shigella boydii CDC 3083-94]
 gi|188489175|gb|EDU64278.1| excinuclease ABC, B subunit [Escherichia coli 53638]
 gi|189002731|gb|EDU71717.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4076]
 gi|189355854|gb|EDU74273.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4401]
 gi|189363475|gb|EDU81894.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4486]
 gi|189365676|gb|EDU84092.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4501]
 gi|189373107|gb|EDU91523.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC869]
 gi|189377767|gb|EDU96183.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC508]
 gi|190900679|gb|EDV60478.1| excinuclease ABC, B subunit [Escherichia coli B7A]
 gi|192928872|gb|EDV82485.1| excinuclease ABC, B subunit [Escherichia coli E22]
 gi|192957313|gb|EDV87761.1| excinuclease ABC, B subunit [Escherichia coli E110019]
 gi|194413739|gb|EDX30018.1| excinuclease ABC, B subunit [Escherichia coli B171]
 gi|194422603|gb|EDX38600.1| excinuclease ABC, B subunit [Escherichia coli 101-1]
 gi|208731991|gb|EDZ80679.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208737654|gb|EDZ85337.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209159752|gb|ACI37185.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4115]
 gi|209776088|gb|ACI86356.1| excision nuclease subunit B [Escherichia coli]
 gi|209776090|gb|ACI86357.1| excision nuclease subunit B [Escherichia coli]
 gi|209776092|gb|ACI86358.1| excision nuclease subunit B [Escherichia coli]
 gi|209776094|gb|ACI86359.1| excision nuclease subunit B [Escherichia coli]
 gi|209776096|gb|ACI86360.1| excision nuclease subunit B [Escherichia coli]
 gi|209911283|dbj|BAG76357.1| DNA repair excision nuclease subunit B [Escherichia coli SE11]
 gi|215263939|emb|CAS08279.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli O127:H6 str. E2348/69]
 gi|217320636|gb|EEC29060.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. TW14588]
 gi|218350984|emb|CAU96688.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli 55989]
 gi|218360130|emb|CAQ97679.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli IAI1]
 gi|218364453|emb|CAR02135.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli S88]
 gi|218431253|emb|CAR12130.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli UMN026]
 gi|238861048|gb|ACR63046.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli BW2952]
 gi|242376571|emb|CAQ31280.1| DNA repair; excision nuclease subunit B, subunit of UvrABC
           Nucleotide Excision Repair Complex [Escherichia coli
           BL21(DE3)]
 gi|253325262|gb|ACT29864.1| excinuclease ABC, B subunit [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253972757|gb|ACT38428.1| excinuclease ABC subunit B [Escherichia coli B str. REL606]
 gi|253976977|gb|ACT42647.1| excinuclease ABC subunit B [Escherichia coli BL21(DE3)]
 gi|254591373|gb|ACT70734.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli O157:H7 str. TW14359]
 gi|257752719|dbj|BAI24221.1| excinuclease UvrABC subunit UvrB [Escherichia coli O26:H11 str.
           11368]
 gi|257758168|dbj|BAI29665.1| excinuclease UvrABC subunit UvrB [Escherichia coli O103:H2 str.
           12009]
 gi|257763302|dbj|BAI34797.1| excinuclease UvrABC subunit UvrB [Escherichia coli O111:H- str.
           11128]
 gi|260450074|gb|ACX40496.1| excinuclease ABC, B subunit [Escherichia coli DH1]
 gi|281177915|dbj|BAI54245.1| DNA repair excision nuclease subunit B [Escherichia coli SE15]
 gi|284920628|emb|CBG33690.1| UvrABC system protein B (excinuclease ABC subunit B) [Escherichia
           coli 042]
 gi|290761649|gb|ADD55610.1| UvrABC system protein B [Escherichia coli O55:H7 str. CB9615]
 gi|291323859|gb|EFE63281.1| excinuclease ABC [Escherichia coli B088]
 gi|291428666|gb|EFF01691.1| excinuclease ABC subunit B [Escherichia coli FVEC1412]
 gi|291434117|gb|EFF07090.1| excinuclease ABC [Escherichia coli B185]
 gi|291469625|gb|EFF12109.1| excinuclease ABC [Escherichia coli B354]
 gi|294493323|gb|ADE92079.1| excinuclease ABC, B subunit [Escherichia coli IHE3034]
 gi|298279559|gb|EFI21067.1| UvrABC system protein B [Escherichia coli FVEC1302]
 gi|299880355|gb|EFI88566.1| excinuclease ABC subunit B [Escherichia coli MS 196-1]
 gi|300315592|gb|EFJ65376.1| excinuclease ABC subunit B [Escherichia coli MS 175-1]
 gi|300358056|gb|EFJ73926.1| excinuclease ABC subunit B [Escherichia coli MS 198-1]
 gi|300398541|gb|EFJ82079.1| excinuclease ABC subunit B [Escherichia coli MS 69-1]
 gi|300401151|gb|EFJ84689.1| excinuclease ABC subunit B [Escherichia coli MS 84-1]
 gi|300412973|gb|EFJ96283.1| excinuclease ABC subunit B [Escherichia coli MS 115-1]
 gi|300420906|gb|EFK04217.1| excinuclease ABC subunit B [Escherichia coli MS 182-1]
 gi|300453219|gb|EFK16839.1| excinuclease ABC subunit B [Escherichia coli MS 116-1]
 gi|300462619|gb|EFK26112.1| excinuclease ABC subunit B [Escherichia coli MS 187-1]
 gi|300524479|gb|EFK45548.1| excinuclease ABC subunit B [Escherichia coli MS 119-7]
 gi|300531113|gb|EFK52175.1| excinuclease ABC subunit B [Escherichia coli MS 107-1]
 gi|300845536|gb|EFK73296.1| excinuclease ABC subunit B [Escherichia coli MS 78-1]
 gi|301075545|gb|EFK90351.1| excinuclease ABC subunit B [Escherichia coli MS 146-1]
 gi|305853583|gb|EFM54022.1| excinuclease ABC subunit B [Escherichia coli NC101]
 gi|306906451|gb|EFN36965.1| excinuclease ABC, B subunit [Escherichia coli W]
 gi|307627812|gb|ADN72116.1| excinuclease ABC subunit B [Escherichia coli UM146]
 gi|308118444|gb|EFO55706.1| excinuclease ABC subunit B [Escherichia coli MS 145-7]
 gi|310336614|gb|EFQ01781.1| excinuclease ABC, B subunit [Escherichia coli 1827-70]
 gi|312287549|gb|EFR15456.1| excinuclease ABC, B subunit [Escherichia coli 2362-75]
 gi|315060015|gb|ADT74342.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli W]
 gi|315135429|dbj|BAJ42588.1| UvrABC system protein B [Escherichia coli DH1]
 gi|315257765|gb|EFU37733.1| excinuclease ABC subunit B [Escherichia coli MS 85-1]
 gi|315287196|gb|EFU46608.1| excinuclease ABC subunit B [Escherichia coli MS 110-3]
 gi|315619778|gb|EFV00297.1| excinuclease ABC, B subunit [Escherichia coli 3431]
 gi|320175200|gb|EFW50309.1| Excinuclease ABC subunit B [Shigella dysenteriae CDC 74-1112]
 gi|320183268|gb|EFW58123.1| Excinuclease ABC subunit B [Shigella flexneri CDC 796-83]
 gi|320192747|gb|EFW67388.1| Excinuclease ABC subunit B [Escherichia coli O157:H7 str. EC1212]
 gi|320198968|gb|EFW73565.1| Excinuclease ABC subunit B [Escherichia coli EC4100B]
 gi|320637640|gb|EFX07432.1| excinuclease ABC subunit B [Escherichia coli O157:H7 str. G5101]
 gi|320642767|gb|EFX11968.1| excinuclease ABC subunit B [Escherichia coli O157:H- str. 493-89]
 gi|320648223|gb|EFX16878.1| excinuclease ABC subunit B [Escherichia coli O157:H- str. H 2687]
 gi|320654060|gb|EFX22128.1| excinuclease ABC subunit B [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320659683|gb|EFX27239.1| excinuclease ABC subunit B [Escherichia coli O55:H7 str. USDA 5905]
 gi|320664153|gb|EFX31304.1| excinuclease ABC subunit B [Escherichia coli O157:H7 str. LSU-61]
 gi|323155700|gb|EFZ41871.1| excinuclease ABC, B subunit [Escherichia coli EPECa14]
 gi|323159708|gb|EFZ45686.1| excinuclease ABC, B subunit [Escherichia coli E128010]
 gi|323165696|gb|EFZ51482.1| excinuclease ABC, B subunit [Shigella sonnei 53G]
 gi|323172105|gb|EFZ57744.1| excinuclease ABC, B subunit [Escherichia coli LT-68]
 gi|323175603|gb|EFZ61198.1| excinuclease ABC, B subunit [Escherichia coli 1180]
 gi|323185066|gb|EFZ70432.1| excinuclease ABC, B subunit [Escherichia coli 1357]
 gi|323190905|gb|EFZ76172.1| excinuclease ABC, B subunit [Escherichia coli RN587/1]
 gi|323379426|gb|ADX51694.1| excinuclease ABC, B subunit [Escherichia coli KO11]
 gi|323938267|gb|EGB34526.1| excinuclease ABC [Escherichia coli E1520]
 gi|323947064|gb|EGB43077.1| excinuclease ABC [Escherichia coli H120]
 gi|323953558|gb|EGB49424.1| excinuclease ABC [Escherichia coli H252]
 gi|323958068|gb|EGB53777.1| excinuclease ABC [Escherichia coli H263]
 gi|323963026|gb|EGB58597.1| excinuclease ABC [Escherichia coli H489]
 gi|326338335|gb|EGD62164.1| Excinuclease ABC subunit B [Escherichia coli O157:H7 str. 1125]
 gi|326346313|gb|EGD70051.1| Excinuclease ABC subunit B [Escherichia coli O157:H7 str. 1044]
 gi|330910524|gb|EGH39034.1| excinuclease ABC subunit B [Escherichia coli AA86]
 gi|331038090|gb|EGI10310.1| excinuclease ABC subunit B [Escherichia coli H736]
 gi|331044748|gb|EGI16875.1| excinuclease ABC subunit B [Escherichia coli M605]
 gi|331050060|gb|EGI22118.1| excinuclease ABC subunit B [Escherichia coli M718]
 gi|331060556|gb|EGI32520.1| excinuclease ABC subunit B [Escherichia coli TA143]
 gi|331065498|gb|EGI37391.1| excinuclease ABC subunit B [Escherichia coli TA271]
 gi|331070486|gb|EGI41850.1| excinuclease ABC subunit B [Escherichia coli TA280]
 gi|331075202|gb|EGI46500.1| excinuclease ABC subunit B [Escherichia coli H591]
 gi|331079917|gb|EGI51096.1| excinuclease ABC subunit B [Escherichia coli H299]
 gi|332097545|gb|EGJ02525.1| excinuclease ABC, B subunit [Shigella boydii 3594-74]
 gi|332104730|gb|EGJ08076.1| excision nuclease subunit B [Shigella sp. D9]
 gi|332342111|gb|AEE55445.1| excinuclease ABC, B subunit UvrB [Escherichia coli UMNK88]
          Length = 673

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|325498050|gb|EGC95909.1| excinuclease ABC subunit B [Escherichia fergusonii ECD227]
          Length = 673

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPVVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|258627130|ref|ZP_05721926.1| excinuclease ABC subunit B [Vibrio mimicus VM603]
 gi|258580648|gb|EEW05601.1| excinuclease ABC subunit B [Vibrio mimicus VM603]
          Length = 676

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/668 (54%), Positives = 484/668 (72%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG    R++    I
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLARYTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATPG +EL +  G + +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPGEYELTKSCGEVADQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARVRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N K ILYAD+ITKS++ A+DET RRREKQ  +N++  I PQ +K  + ++++   L 
Sbjct: 545 RNINGKAILYADSITKSMRKAMDETERRREKQHAYNEQLGITPQPLKRSVKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D A +    +++ + L+K             ++ +  +  L   M+  A NL FE AA+ 
Sbjct: 602 DIAKSRKQKNSKVVPLAKVAEESATYRVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQK 661

Query: 787 RDEIKRLK 794
           RDEI +L+
Sbjct: 662 RDEIHQLR 669


>gi|324009635|gb|EGB78854.1| excinuclease ABC subunit B [Escherichia coli MS 57-2]
          Length = 673

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/664 (56%), Positives = 480/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYFPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|121308596|dbj|BAF43690.1| excision nuclease subunit B [Photobacterium phosphoreum]
          Length = 675

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/670 (55%), Positives = 485/670 (72%), Gaps = 20/670 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + +DY P+GDQP AI QL+ G+ S    Q LLGVTGSGKTFT+A VI    RP ++M
Sbjct: 4   LFNLVSDYSPAGDQPTAIEQLMDGLDSGLAQQTLLGVTGSGKTFTIANVIAQANRPTLIM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E ++FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR
Sbjct: 64  APNKTLAAQLYGEMRDFFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+++SVS IYG+G  ESY +M++ ++ GD ++Q+++L  L + QYKR
Sbjct: 124 LSATKALMERRDVIIIASVSAIYGLGDPESYLKMMLHVRRGDVLDQRDILRRLAELQYKR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIK 378
            D    RGTFRV G+ I+IFP+  E  A R+ +F  ++E IS F PLTG  I RN+    
Sbjct: 184 NDAVFERGTFRVRGEVIDIFPAESEKEAIRLELFDGEVEVISSFDPLTGAIIQRNLARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  A++ IK EL  R  +L    +L+E QR+ QR  +D+EM+   G 
Sbjct: 244 IYPKTHYVTPREKILDAIEGIKLELTQRKQQLLDNNKLVEEQRISQRTQFDIEMMNELGF 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+ QI  M+RGD  RK  L 
Sbjct: 304 CSGIENYSRYLSGRTEGEPPPTLFDYLPADGLLIIDESHVTVSQIGAMFRGDRSRKENLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP++FEE+  L P TI VSATPG++E+E+  G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPMKFEEFESLAPQTIYVSATPGNYEIEKSGGDIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI++ + +  R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 IEVRPVATQVDDLLSEIHIRSAKQERVLVTTLTKRMSEDLTEYLTEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  K ILY D IT S++ AI+ET RRREKQ+ +N +HNI PQ + +KI +     LL
Sbjct: 544 ARNIEGKAILYGDRITGSMERAINETQRRREKQIIYNLEHNIIPQKLNKKIGD-----LL 598

Query: 739 EDAATT------NISIDAQQLSLSK--------KKGKAHLKSLRKQMHLAADNLNFEEAA 784
           E  A +      N + D  +++ SK        ++ +  ++ L KQM+  A NL FE+AA
Sbjct: 599 ELGAPSGRSKSRNKAADLHKVAESKGTYSVLTPQQLELEIQRLEKQMYDFAQNLEFEQAA 658

Query: 785 RIRDEIKRLK 794
             RD+I +L+
Sbjct: 659 DTRDKIHQLR 668


>gi|218699151|ref|YP_002406780.1| excinuclease ABC subunit B [Escherichia coli IAI39]
 gi|300939813|ref|ZP_07154451.1| excinuclease ABC subunit B [Escherichia coli MS 21-1]
 gi|226695564|sp|B7NNK9|UVRB_ECO7I RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|218369137|emb|CAR16892.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli IAI39]
 gi|300455345|gb|EFK18838.1| excinuclease ABC subunit B [Escherichia coli MS 21-1]
          Length = 673

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|331656796|ref|ZP_08357758.1| excinuclease ABC subunit B [Escherichia coli TA206]
 gi|331055044|gb|EGI27053.1| excinuclease ABC subunit B [Escherichia coli TA206]
          Length = 673

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADIQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|237807887|ref|YP_002892327.1| excinuclease ABC subunit B [Tolumonas auensis DSM 9187]
 gi|237500148|gb|ACQ92741.1| excinuclease ABC, B subunit [Tolumonas auensis DSM 9187]
          Length = 669

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/662 (54%), Positives = 478/662 (72%), Gaps = 11/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ + P+GDQP AIA+LL GI +    Q LLGVTGSGKTFTMA VI  + RP +++A
Sbjct: 5   FKLESQFQPAGDQPEAIARLLDGIDAGLAHQTLLGVTGSGKTFTMANVIAKLNRPTMILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E + FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK+++INE I++MR 
Sbjct: 65  PNKTLAAQLYGEMREFFPENAVEYFVSYYDYYQPEAYVPTTDTFIEKDAAINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  ++Y  M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERRDVVIVASVSAIYGLGDPQAYLSMMLHLRQGDIINQRDILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+  + +A RV +F  +IE +S F PLTG   + +    ++
Sbjct: 185 DAVFQRATFRVRGEVIDIFPAESDKLALRVELFDEEIERLSLFDPLTGAVEKVIPRFTVF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR T+  A+  IK EL  R  +L    +LLE QRL QR  +D+EM++  G C 
Sbjct: 245 PKSHYVTPRDTILQAIDTIKVELAERREQLLSANKLLEEQRLTQRTLFDIEMMQELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRATGEPPPTLFDYLPADGLLIIDESHVTVPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+  L P TI VSATP ++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFDEFEALMPQTIFVSATPAAYELEKSGGDVVQQVVRPTGLLDPEIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI L  +   R+L+T LTKRM+EDLTEYL+E  +RVRY+HS++ T+E
Sbjct: 425 VRPVTTQVDDLLSEIRLRVKLNERVLVTTLTKRMSEDLTEYLHEHGVRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S++ AIDET RRR  Q   N +H I P+ + +K+++V+    L  
Sbjct: 545 NLNGKAILYGDRITNSMKTAIDETHRRRAVQQAFNLEHGITPKGLNKKVVDVMQ---LGG 601

Query: 741 AATTNISIDAQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            ++     +A++++        L  K+    +K L  QM   A NL FE+AA +RD+I  
Sbjct: 602 VSSKTQGKNAKKVAEPGAHYQWLHPKELAKEIKRLENQMFEHARNLEFEQAATLRDQIHE 661

Query: 793 LK 794
           L+
Sbjct: 662 LQ 663


>gi|227884259|ref|ZP_04002064.1| excinuclease ABC subunit B [Escherichia coli 83972]
 gi|300993254|ref|ZP_07180301.1| excinuclease ABC subunit B [Escherichia coli MS 45-1]
 gi|301051303|ref|ZP_07198129.1| excinuclease ABC subunit B [Escherichia coli MS 185-1]
 gi|227839011|gb|EEJ49477.1| excinuclease ABC subunit B [Escherichia coli 83972]
 gi|300297062|gb|EFJ53447.1| excinuclease ABC subunit B [Escherichia coli MS 185-1]
 gi|300406662|gb|EFJ90200.1| excinuclease ABC subunit B [Escherichia coli MS 45-1]
 gi|307552624|gb|ADN45399.1| UvrABC system protein B [Escherichia coli ABU 83972]
 gi|315292637|gb|EFU51989.1| excinuclease ABC subunit B [Escherichia coli MS 153-1]
          Length = 673

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +L+E QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLMEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|237707263|ref|ZP_04537744.1| excision nuclease subunit B [Escherichia sp. 3_2_53FAA]
 gi|226898473|gb|EEH84732.1| excision nuclease subunit B [Escherichia sp. 3_2_53FAA]
          Length = 673

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGELIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|222032510|emb|CAP75249.1| UvrABC system protein B [Escherichia coli LF82]
 gi|312945297|gb|ADR26124.1| excinuclease ABC subunit B [Escherichia coli O83:H1 str. NRG 857C]
 gi|315299290|gb|EFU58542.1| excinuclease ABC subunit B [Escherichia coli MS 16-3]
          Length = 673

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKLRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|218549657|ref|YP_002383448.1| excinuclease ABC subunit B [Escherichia fergusonii ATCC 35469]
 gi|226695483|sp|B7LJY3|UVRB_ESCF3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|218357198|emb|CAQ89833.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia fergusonii ATCC 35469]
 gi|323976839|gb|EGB71927.1| excinuclease ABC [Escherichia coli TW10509]
 gi|324114343|gb|EGC08312.1| excinuclease ABC [Escherichia fergusonii B253]
          Length = 673

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|157962172|ref|YP_001502206.1| excinuclease ABC subunit B [Shewanella pealeana ATCC 700345]
 gi|157847172|gb|ABV87671.1| excinuclease ABC, B subunit [Shewanella pealeana ATCC 700345]
          Length = 667

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/666 (53%), Positives = 485/666 (72%), Gaps = 18/666 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ Y P+GDQP AI +L++G+ S    Q LLGVTGSGKTFT+A VI  M RP I+
Sbjct: 4   SVFQLESMYKPAGDQPTAINKLVEGLESGVACQTLLGVTGSGKTFTVANVIAKMSRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP T T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTGTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  ++Y +M++ L+ G ++EQ+++L  L + QY 
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPKAYMKMLLHLREGGNMEQRDILKRLSELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGT+RV G+ I+IFP+  +  A R+ +F ++IE +S F PLTG  ++ +  I 
Sbjct: 184 RNDIELQRGTYRVRGEVIDIFPADSDKNAIRIELFDDEIERLSLFDPLTGHVVKRIARIT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYVTPR ++  A + IK+EL+ R  +L +  +L+E QR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKSHYVTPRESILAATEDIKQELRDRKKQLLELNKLIEEQRITERVQYDVEMMTELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PG+ PPTL +Y+P+D LL +DESHVT+PQI  MY+GD  RK  L 
Sbjct: 304 CSGIENYSRYLSGRAPGDGPPTLLDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKMNLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P +I VSATP  +E+++  G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEALMPQSIFVSATPSDYEIDKSDGEIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    QV+D+  EI        R+L+T LTKRM+EDL+EYL E  ++VRY+HS++ T
Sbjct: 424 IEVRPVGIQVDDLLSEIGKRVAVNERVLVTTLTKRMSEDLSEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVL+GINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGVFDVLIGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N KVILY D ITKS+  AI ET RRREKQ ++N  + I P+ V ++I +V+D    
Sbjct: 544 ARNINGKVILYGDRITKSMDKAITETNRRREKQHQYNLDNGITPKGVVKRITDVMD---- 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKS----------LRKQMHLAADNLNFEEAARIRD 788
                 +  +D+++  +++K+G  H+            L KQMH  A NL FEEAA +RD
Sbjct: 600 ---VGDHQYVDSER-GVAEKEGGYHVAKPADISHDIDRLEKQMHEHAKNLEFEEAAAVRD 655

Query: 789 EIKRLK 794
           ++ RL+
Sbjct: 656 QVSRLR 661


>gi|297170618|gb|ADI21644.1| helicase subunit of the DNA excision repair complex [uncultured
           myxobacterium HF0130_06F04]
          Length = 666

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/653 (56%), Positives = 485/653 (74%), Gaps = 10/653 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +  ++ P+GDQP+A+  L+ G  + +  Q+LLGVTGSGKTFT+A  I  +Q P +V+A
Sbjct: 10  FILCAEFAPAGDQPSALESLVPGFAAPKSHQVLLGVTGSGKTFTVASAISQLQIPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP TDT+I+K+++IN+ IDRMRH
Sbjct: 70  HNKTLAAQLYEEFKSFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIDKDATINDAIDRMRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L ERND I+VSSVSCIYG+GS E+Y  M ++L +GD +++ E+L  L   Q++R 
Sbjct: 130 SATQALFERNDVIIVSSVSCIYGLGSAEAYYGMHLKLNVGDLIDRDEVLLKLANIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD +E+FP+H  + A+R+  FG++IE I+   PL G KIR+V+ + I+
Sbjct: 190 DTDFHRGTFRVRGDVVEVFPAHQFEQAYRIEWFGDEIESIAVVDPLRGVKIRDVDKVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV    + + A   I++EL+ RLI+L KE +L+EAQRLEQR  +DLEM+E  G C 
Sbjct: 250 PTSHYVVTPESRDRATNAIRDELRERLIQLRKENKLVEAQRLEQRTLFDLEMIEEMGYCT 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR  G PPPTL +Y+ ++ LL +DESH T+PQ+  MYRGD  RK  L  +
Sbjct: 310 GIENYSRHLTGRPSGLPPPTLVDYLGKEFLLVIDESHQTVPQLGAMYRGDRARKENLVNF 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L    + VSATPG +ELE  QG+IVEQIIRPTGL+DP ++
Sbjct: 370 GFRLPSALDNRPLQFEEFRKLTDRVLYVSATPGDFELEDTQGVIVEQIIRPTGLIDPQID 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ +EI +   +  R+L+TVLTKRMAEDLTEY  +  +RVRY+HS++ TLE
Sbjct: 430 IRPVNNQVDDLLEEIRVRESRQERVLVTVLTKRMAEDLTEYYADVGVRVRYLHSDIDTLE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI++I DLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RIQVIHDLRAGQFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           +V  K ILYAD +T+SIQ A+DET RRR+KQ  +N+ +NI P++V+ K+++     DP  
Sbjct: 550 HVEGKAILYADRMTQSIQRAVDETVRRRQKQETYNQDNNITPKTVQRKLLQFKAGEDP-- 607

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
              A TT+ SID     +   K    +++LRK+M   A++L FE+AA +RD++
Sbjct: 608 ---ADTTSPSIDPTH--IEPDKLPKEIEALRKKMLDYAESLEFEKAAELRDQV 655


>gi|85058885|ref|YP_454587.1| excinuclease ABC subunit B [Sodalis glossinidius str. 'morsitans']
 gi|84779405|dbj|BAE74182.1| excision nuclease subunit B [Sodalis glossinidius str. 'morsitans']
          Length = 669

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/658 (56%), Positives = 474/658 (72%), Gaps = 4/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VIE + RP +V+A
Sbjct: 5   FKLVSSFEPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIEDLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  ++Y +M++ L  G  V Q+ +++ L + QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDAYLKMMLHLTRGMLVSQRSIVNRLSELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+  ++VA RV +F +++E +S F PLTG   + V    IY
Sbjct: 185 DQAFQRCTFRVRGEVIDIFPAESDEVALRVELFDDEVERLSLFDPLTGHVDQEVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  L  AM+ IK EL  R   L   G+LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKNHYVTPRERLVQAMEDIKVELAERRESLLASGKLLEEQRLSQRTAFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  + P TI VSATPG +ELE C   I++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFAAMAPQTIYVSATPGPYELEMCGNDIIDQLVRPTGLLDPQIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI    Q   R+L+T LTKRMAEDLTEYL E   RVRY+HS+++T+E
Sbjct: 425 VRPVSTQVDDLLSEIRRRVQINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIETVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVVILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----PI 736
           N+N K ILY D IT S+  AI+ET RRREKQ  +N  + I PQ++ ++I ++++    P+
Sbjct: 545 NLNGKAILYGDKITPSMARAIEETERRREKQHAYNLANGIVPQALNKRIADIMELGQSPV 604

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             +      +   A+   L+ K  +  ++ L  +M   A NL FEEAA +RD+I  L+
Sbjct: 605 HDKHKKRKAMEAAAKYGDLTPKALEQKIRELETRMQQHAQNLEFEEAASVRDQIHALR 662


>gi|323967375|gb|EGB62796.1| excinuclease ABC [Escherichia coli M863]
 gi|327253561|gb|EGE65190.1| excinuclease ABC, B subunit [Escherichia coli STEC_7v]
          Length = 673

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/664 (56%), Positives = 480/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|78224410|ref|YP_386157.1| excinuclease ABC subunit B [Geobacter metallireducens GS-15]
 gi|78195665|gb|ABB33432.1| Excinuclease ABC subunit B [Geobacter metallireducens GS-15]
          Length = 665

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/654 (55%), Positives = 471/654 (72%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           + + +DY P GDQP AI +L +GI   ++ Q+LLGVTGSGKTFTMA VI A  RPA+V+A
Sbjct: 4   YTLVSDYTPRGDQPRAIEELSEGILRGDRHQVLLGVTGSGKTFTMANVIAATNRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK  FPHNAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++ID++RH
Sbjct: 64  PNKTLAAQLYGEFKELFPHNAVEYFVSYYDYYQPEAYIPTTDTFIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATRSLL R D I+V+SVSCIYGIGS   Y  M +    G+   +  LL  LV+ QY+R 
Sbjct: 124 AATRSLLTRQDVIIVASVSCIYGIGSPAEYQAMHIFFHEGEEYGRDTLLRKLVEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+H ++ A R+  FG+ +E ISE  PL G   + +    +Y
Sbjct: 184 DIDFHRGTFRVRGDIVEIFPAHEDEKALRIEFFGDAVEAISEIDPLRGVAHQRLAKCAVY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  R TL  A++ I+  L+ R+    +   L+EAQRLEQR  +DLEM+E  G CQ
Sbjct: 244 PASHYVATRETLERAIEEIRVALRERIQWFRERNMLVEAQRLEQRTMFDLEMMEEMGFCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GR PGEPP TL +Y P+D LLFVDESH+T+ Q+ GMYRGD  RK TL  Y
Sbjct: 304 GIENYSRHFDGRAPGEPPYTLLDYFPKDFLLFVDESHITVSQVGGMYRGDRSRKETLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+      TI VSATP  +EL+Q  G++VEQ+IRPTGL+DP +E
Sbjct: 364 GFRLPSALDNRPLTFQEFTARLNQTIYVSATPADYELQQAGGVVVEQVIRPTGLLDPVIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D+  E+     +G R+L+T LTKRMAE+LT+Y  +  +RVRY+HS++ T++
Sbjct: 424 VRPAAGQVDDLLHEVRETVARGERVLVTTLTKRMAEELTDYYRDLGVRVRYLHSDIDTIQ 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT GRAAR
Sbjct: 484 RMQIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSARSLIQTCGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +V +YAD +T S++  I+ET RRR  Q   N +HNI P++VK+ +  +++ I   D
Sbjct: 544 NVNGRVTMYADAVTGSMEACIEETARRRTIQEAFNTEHNITPRTVKKGLRTILESIEERD 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             T  ++ + Q+  +   +    +K LRK+M  +A NL FE+AA +RD IK L+
Sbjct: 604 YYTIPLAAEPQEEYVPADEIPKLVKRLRKEMLASAKNLEFEKAAELRDRIKNLE 657


>gi|307266010|ref|ZP_07547557.1| excinuclease ABC, B subunit [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918972|gb|EFN49199.1| excinuclease ABC, B subunit [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 661

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/660 (55%), Positives = 485/660 (73%), Gaps = 15/660 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L++G+    + Q LLGVTGSGKTFTMA +I+ + RP +V+A
Sbjct: 4   FKLVSNFKPTGDQPQAIEKLVEGVKKGYRFQTLLGVTGSGKTFTMANIIQKLNRPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SINE+ID++RH
Sbjct: 64  HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G    Y  +++ L+ G   ++ E++  LV  QY+R 
Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPVDYENLMLSLRPGMIKDRDEIIKKLVDIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD IEIFP+   + A RV +FG++I+ I+E   LTG+ +   + + I+
Sbjct: 184 DVNFTRGKFRVRGDVIEIFPASFSNKAIRVELFGDEIDRIAEIDVLTGEVLGLRKHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T +  L  A+K I+EEL+ R  EL+  G+++EA+RL QR  YDLEML+  G CQ
Sbjct: 244 PASHYATSKDKLERAIKSIREELEQRYKELKDAGKIVEAERLRQRTNYDLEMLQEMGYCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++GR PG PP TL +Y P+D L+F+DESHVTIPQI GMY GD  RK  L EY
Sbjct: 304 GIENYSRHISGRPPGSPPYTLLDYFPKDFLIFIDESHVTIPQIRGMYNGDRSRKEALVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I VSATPG +E+E  +  +VEQ+IRPTGLVDP V 
Sbjct: 364 GFRLPSAFDNRPLTFEEFEERINQVIFVSATPGPYEIEHSEQ-VVEQLIRPTGLVDPEVI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + QV+D+  EI     +G R+L+T LTK+MAEDLT+YL +  I+V+Y+HS+++T+E
Sbjct: 423 VKPVKGQVDDLIGEIRKTVDKGFRVLVTTLTKKMAEDLTDYLKDMGIKVKYLHSDIETIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YADT+T S++ AIDET RRR+ Q+E+NKKH I P++V + + +VI+      
Sbjct: 543 NAEGRVIMYADTVTNSMKRAIDETNRRRKIQMEYNKKHGITPKTVIKGVRDVIE------ 596

Query: 741 AATTNISIDAQQLSLSKKKG------KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              T+++ + Q+ +  K K       K+ ++ L K+M  AA  L FE+AA++RD I  LK
Sbjct: 597 --ATHVAEEEQKYTRKKVKTYDPEIIKSTIEQLEKEMKEAAIELQFEKAAKLRDVIFELK 654


>gi|330810809|ref|YP_004355271.1| UvrABC system protein B (Excinuclease ABC, subunit B) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327378917|gb|AEA70267.1| UvrABC system protein B (Excinuclease ABC, subunit B) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 671

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/669 (55%), Positives = 486/669 (72%), Gaps = 22/669 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI  +++GI +    Q LLGVTGSGKTF++A VI  +QRP +V+A
Sbjct: 4   FQLVTRFQPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQIQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+I+P+  +  A R+ +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A++ IK EL+ RL  L    +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLLDAIEGIKVELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTL++Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G +VEQ++RPTGLVDP VE
Sbjct: 364 GFRLPSALDNRPMRFDEWESVSPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDPQVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI+       R+L+T LTKRMAEDLT+YL +  +RVRY+HS++ T+E
Sbjct: 423 VRPALTQVDDLLSEISKRVAVEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD IT S++ AI ET RRR+KQ+  N  + I P+ V + + +++      +
Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVFKDVADIM------E 596

Query: 741 AATTNISIDAQQLSLSK-----KKGKAHLKS----------LRKQMHLAADNLNFEEAAR 785
            AT   S   ++  ++K      + +A L+S          L ++M+  A +L FE AA+
Sbjct: 597 GATVPGSRSKKRKGMAKAAEESARYEAELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQ 656

Query: 786 IRDEIKRLK 794
           +RDEI +L+
Sbjct: 657 LRDEIGKLR 665


>gi|119713691|gb|ABL97741.1| excinuclease ABC B subunit [uncultured marine bacterium EB0_41B09]
          Length = 678

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/670 (55%), Positives = 482/670 (71%), Gaps = 10/670 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   + P+GDQP AI  L+ G+++ EK Q LLGVTGSGKTFT+A VI    +P+IVMA
Sbjct: 10  FILNQPFKPAGDQPKAINSLVDGVNNNEKFQTLLGVTGSGKTFTIANVIAQTGKPSIVMA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF++FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSIN+ I++MR 
Sbjct: 70  PNKTLAAQLYSEFRDFFPQNAVEYFVSYYDYYQPEAYVPGRDVFIEKDSSINDHIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER+D I+V++VS IYGIG    Y  M++ +++ + + Q+ ++  LV  QY R 
Sbjct: 130 SATKSLLERDDSIIVATVSAIYGIGDPVDYHGMVLHIQVDEKILQRNIILRLVSMQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD I+IFP+   + A R+++F + IE I+ F PLTGQ    ++   IY
Sbjct: 190 DFDFSRGCFRVRGDVIDIFPAENSETAIRITLFDDVIESITAFDPLTGQLFDKLKRFTIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T   A++ IK+EL  R+ +   EG+LLEAQR+EQR  +DLEML   G C+
Sbjct: 250 PSSHYVTPRETTLKAIERIKKELVERVKQYTTEGKLLEAQRIEQRTKFDLEMLNEIGFCK 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  G+P PTL  Y+P ++L+ +DESHVT+PQI GM +GD  RK  L +Y
Sbjct: 310 GIENYSRHLSGRKAGDPAPTLLNYLPNNALMIIDESHVTVPQIGGMSKGDRARKNNLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P  I VSATP  +E E+   IIVEQ++RPTGL+DP +E
Sbjct: 370 GFRLPSAHDNRPLKFNEFESIMPQCIFVSATPADYE-EKHSPIIVEQVVRPTGLIDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+ A +QV+DV  EI +  +   R+L+T LTKRMAEDLT+YL E +I+VRY+HSE+ T+E
Sbjct: 429 IKPADSQVDDVLSEIKIRVEANERVLITTLTKRMAEDLTDYLTEHSIKVRYLHSEIDTVE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDV+VGINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQT GRAAR
Sbjct: 489 RVEIIRDLRLGKFDVVVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTAGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N KVI YA++IT+S+Q AIDET RRR+KQL+ NK +NI P  + +K+ ++I+ I  E+
Sbjct: 549 NLNGKVIFYANSITRSMQAAIDETGRRRKKQLKFNKDNNITPVGILKKVKDIIESIQDEE 608

Query: 741 AATTNISIDAQQLS------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                    AQ  S      L++ +    +  L K M  AA NL FE+AA  RD+IK LK
Sbjct: 609 EFKKQ---KAQSKSNRKYEDLTEPQIIKEIGKLEKVMQSAARNLEFEKAANARDQIKFLK 665

Query: 795 SSPYFQGLDD 804
              Y   + D
Sbjct: 666 EKIYGANIQD 675


>gi|83717423|ref|YP_440229.1| excinuclease ABC subunit B [Burkholderia thailandensis E264]
 gi|167616925|ref|ZP_02385556.1| excinuclease ABC subunit B [Burkholderia thailandensis Bt4]
 gi|257140855|ref|ZP_05589117.1| excinuclease ABC subunit B [Burkholderia thailandensis E264]
 gi|83651248|gb|ABC35312.1| excinuclease ABC, B subunit [Burkholderia thailandensis E264]
          Length = 696

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y PSGDQP AIA L++G+      Q LLGVTGSGKT+TMA  
Sbjct: 13  DESKFVTFEGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANT 72

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 73  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+
Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREV 192

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG
Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTG 252

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +
Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRF 312

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYN 372

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G   EQ+
Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVSGQTAEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 432 VRPTGLVDPEIEVRPASTQVDDVLSEITERVKADERVLITVLTKRMAEQLTEFLADHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N++  I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNQERGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
           + RD++  L+   +   + D
Sbjct: 671 QTRDQLALLRERVFGANVGD 690


>gi|323942652|gb|EGB38817.1| excinuclease ABC [Escherichia coli E482]
          Length = 673

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEICQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|26246750|ref|NP_752790.1| excinuclease ABC subunit B [Escherichia coli CFT073]
 gi|31563263|sp|Q8FJP8|UVRB_ECOL6 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|26107149|gb|AAN79333.1|AE016757_237 Excinuclease ABC subunit B [Escherichia coli CFT073]
          Length = 673

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVXLFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +L+E QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLMEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|188586647|ref|YP_001918192.1| Excinuclease ABC subunit B [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|229557963|sp|B2A713|UVRB_NATTJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|179351334|gb|ACB85604.1| Excinuclease ABC subunit B [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 658

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/656 (56%), Positives = 480/656 (73%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+D+   GDQP A+ +L + ++     Q LLGVTGSGKTFTMA VI+ +QRP +V+A
Sbjct: 4   FKLQSDFSLEGDQPKAVDELCESLNGGNSHQTLLGVTGSGKTFTMANVIQRLQRPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL  EFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCGEFKEFFPENAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y + ++ L+ G   ++ E+L  LV  QY R 
Sbjct: 124 SATSALFERRDVIIVASVSCIYGLGSPEEYREQVLSLRCGMEKDRDEILKGLVDIQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD IE+FP+   + A R+ +FG++IE I+E   LTG+ +     + I+
Sbjct: 184 DVNFTRGTFRVRGDVIEVFPASYTETAVRIELFGDEIERITEIDTLTGEILGERNHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT R  L  A++ I+EEL  +L  L+++G+ +EA+RLEQR  YDLEML+  G CQ
Sbjct: 244 PASHFVTRRSKLEKAIESIQEELHEQLEYLKRQGKAVEAKRLEQRTNYDLEMLQEMGFCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  G  P  L +Y P+D L+ VDESH+TIPQI GMY GD  RK  L ++
Sbjct: 304 GIENYSRHLIGRPAGSRPYCLIDYFPDDYLMVVDESHMTIPQIRGMYAGDMSRKQNLVDH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+  +    I VSATPG +E E  +  IVEQIIRPTGLVDP  E
Sbjct: 364 GFRLPSALDNRPLKFQEFEKMINQNIYVSATPGPYEKEHSER-IVEQIIRPTGLVDPETE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+Y EIN    +  R+L+T LTK+MAEDLT+YL E  IRVRYMHSE+ TLE
Sbjct: 423 VRPVKGQIDDLYSEINKRTDRNERVLVTTLTKKMAEDLTDYLREMGIRVRYMHSEIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEG+LR + SLIQT+GRAAR
Sbjct: 483 RMEIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRDERSLIQTMGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +VI+Y D IT S++ AIDET RRREKQ+E N +HNI PQ+V++K+ +VI+     +
Sbjct: 543 NVNGRVIMYGDAITDSMRRAIDETNRRREKQIEFNARHNITPQTVQKKVHDVIEATRSAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             T   + +  Q  +S K+ K  +  L+++M  AA  L FE+AA +RD I  LK++
Sbjct: 603 DETEAATPENIQ-EMSAKERKELIAKLQEEMKQAAKELEFEKAAELRDLIMELKTA 657


>gi|297545162|ref|YP_003677464.1| excinuclease ABC subunit B [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842937|gb|ADH61453.1| excinuclease ABC, B subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 661

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/660 (55%), Positives = 486/660 (73%), Gaps = 15/660 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L++G+    + Q LLGVTGSGKTFTMA +I+ + RP +V+A
Sbjct: 4   FKLVSNFKPTGDQPQAIEKLVEGVKKGYRFQTLLGVTGSGKTFTMANIIQKLNRPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SINE+ID++RH
Sbjct: 64  HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G    Y  +++ L+ G   ++ E++  LV  QY+R 
Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPIDYENLMLSLRPGMIKDRDEIIKKLVDIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD IEIFP+   + A RV +FG++I+ I+E   LTG+ +   + + I+
Sbjct: 184 DVNFTRGKFRVRGDVIEIFPASFSNKAIRVELFGDEIDRIAEIDVLTGEILGFRKHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T +  L  A+K I+EEL+ R  EL+  G+++EA+RL+QR  YDLEML+  G CQ
Sbjct: 244 PASHYATSKDKLERAIKSIREELEQRYKELKDAGKIVEAERLKQRTNYDLEMLQEMGYCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++GR PG PP TL +Y P+D L+F+DESHVTIPQI GMY GD  RK  L EY
Sbjct: 304 GIENYSRHISGRPPGSPPYTLLDYFPKDFLIFIDESHVTIPQIRGMYNGDRSRKEALVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I VSATPG +E+E  +  +VEQ+IRPTGLVDP V 
Sbjct: 364 GFRLPSAFDNRPLTFEEFEERINQVIFVSATPGPYEIEHSEQ-VVEQLIRPTGLVDPEVI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + QV+D+  EI     +G R+L+T LTK+MAEDLT+YL +  I+V+Y+HS+++T+E
Sbjct: 423 VKPVKGQVDDLIGEIRKTVDKGFRVLVTTLTKKMAEDLTDYLKDMGIKVKYLHSDIETIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YADT+T S++ AIDET RRR+ Q+E+NKKH I P++V + + +VI+      
Sbjct: 543 NAEGRVIMYADTVTNSMKRAIDETNRRRKIQMEYNKKHGITPKTVIKGVRDVIE------ 596

Query: 741 AATTNISIDAQQLSLSKKKG------KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              T+++ + Q+ +  K K       K+ ++ L K+M  AA  L FE+AA++RD I  LK
Sbjct: 597 --ATHVAEEEQKYTRKKVKTYDPEIIKSTIEQLEKEMKEAAIELQFEKAAKLRDVIFELK 654


>gi|326389761|ref|ZP_08211326.1| excinuclease ABC, B subunit [Thermoanaerobacter ethanolicus JW 200]
 gi|325994243|gb|EGD52670.1| excinuclease ABC, B subunit [Thermoanaerobacter ethanolicus JW 200]
          Length = 661

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/660 (55%), Positives = 486/660 (73%), Gaps = 15/660 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L++G+    + Q LLGVTGSGKTFTMA +I+ + RP +V+A
Sbjct: 4   FKLVSNFKPTGDQPQAIEKLVEGVKKGYRFQTLLGVTGSGKTFTMANIIQKLNRPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SINE+ID++RH
Sbjct: 64  HNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G    Y  +++ L+ G   ++ E++  LV  QY+R 
Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPVDYENLMLSLRPGMIKDRDEIIKKLVDIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD IEIFP+   + A RV +FG++I+ I+E   LTG+ +   + + I+
Sbjct: 184 DVNFTRGKFRVRGDVIEIFPASFSNKAIRVELFGDEIDRIAEIDVLTGEVLGLRKHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T +  L  A+K I+EEL+ R  EL+  G+++EA+RL+QR  YDLEML+  G CQ
Sbjct: 244 PASHYATSKDKLERAIKSIREELEQRYKELKDAGKIVEAERLKQRTNYDLEMLQEMGYCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++GR PG PP TL +Y P+D L+F+DESHVTIPQI GMY GD  RK  L EY
Sbjct: 304 GIENYSRHISGRPPGSPPYTLLDYFPKDFLIFIDESHVTIPQIRGMYNGDRSRKEALVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I VSATPG +E+E  +  +VEQ+IRPTGLVDP V 
Sbjct: 364 GFRLPSAFDNRPLTFEEFEERINQVIFVSATPGPYEIEHSEQ-VVEQLIRPTGLVDPEVI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + QV+D+  EI     +G R+L+T LTK+MAEDLT+YL +  I+V+Y+HS+++T+E
Sbjct: 423 VKPVKGQVDDLIGEIRKTVDKGFRVLVTTLTKKMAEDLTDYLKDMGIKVKYLHSDIETIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YADT+T S++ AIDET RRR+ Q+E+NKKH I P++V + + +VI+      
Sbjct: 543 NAEGRVIMYADTVTNSMKRAIDETNRRRKIQMEYNKKHGITPKTVIKGVRDVIE------ 596

Query: 741 AATTNISIDAQQLSLSKKKG------KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              T+++ + Q+ +  K K       K+ ++ L K+M  AA  L FE+AA++RD I  LK
Sbjct: 597 --ATHVAEEEQKYTRKKVKTYDPEIIKSTIEQLEKEMKEAAIELQFEKAAKLRDVIFELK 654


>gi|167036991|ref|YP_001664569.1| excinuclease ABC subunit B [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|167039702|ref|YP_001662687.1| excinuclease ABC subunit B [Thermoanaerobacter sp. X514]
 gi|300915049|ref|ZP_07132364.1| excinuclease ABC, B subunit [Thermoanaerobacter sp. X561]
 gi|307724972|ref|YP_003904723.1| excinuclease ABC subunit B [Thermoanaerobacter sp. X513]
 gi|320115409|ref|YP_004185568.1| excinuclease ABC subunit B [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166853942|gb|ABY92351.1| excinuclease ABC, B subunit [Thermoanaerobacter sp. X514]
 gi|166855825|gb|ABY94233.1| excinuclease ABC, B subunit [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|300888773|gb|EFK83920.1| excinuclease ABC, B subunit [Thermoanaerobacter sp. X561]
 gi|307582033|gb|ADN55432.1| excinuclease ABC, B subunit [Thermoanaerobacter sp. X513]
 gi|319928500|gb|ADV79185.1| excinuclease ABC, B subunit [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 661

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/660 (55%), Positives = 484/660 (73%), Gaps = 15/660 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L++G+    + Q LLGVTGSGKTFTMA +I+ + RP +V+A
Sbjct: 4   FKLVSNFKPTGDQPQAIDKLVEGVKKGYRFQTLLGVTGSGKTFTMANIIQKLNRPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SINE+ID++RH
Sbjct: 64  HNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G    Y  +++ L+ G   ++ E++  LV  QY+R 
Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPVDYENLMLSLRPGMIKDRDEIIKKLVDIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD IEIFP+   + A RV +FG++I+ I+E   LTG+ +   + + I+
Sbjct: 184 DVNFTRGKFRVRGDVIEIFPASFSNKAIRVELFGDEIDRIAEIDVLTGEVLGLRKHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T +  L  A+K I+EEL+ R  EL+  G+++EA+RL QR  YDLEML+  G CQ
Sbjct: 244 PASHYATSKDKLERAIKSIREELEQRYKELKDAGKIVEAERLRQRTNYDLEMLQEMGYCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++GR PG PP TL +Y P+D L+F+DESHVTIPQI GMY GD  RK  L EY
Sbjct: 304 GIENYSRHISGRPPGSPPYTLLDYFPKDFLIFIDESHVTIPQIRGMYNGDRSRKEALVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I VSATPG +ELE  +  +VEQ+IRPTGL+DP V 
Sbjct: 364 GFRLPSAFDNRPLTFEEFEKRINQVIFVSATPGPYELEHSEQ-VVEQLIRPTGLIDPEVI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + QV+D+  EI     +G R+L+T LTK+MAEDLT+YL +  I+V+Y+HS+++T+E
Sbjct: 423 VKPVKGQVDDLIGEIRKTVDKGFRVLVTTLTKKMAEDLTDYLKDMGIKVKYLHSDIETIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YADT+T S++ AIDET RRR+ Q+E+NKKH I P++V + + +VI+      
Sbjct: 543 NAEGRVIMYADTVTNSMKRAIDETNRRRKIQMEYNKKHGITPKTVIKGVRDVIE------ 596

Query: 741 AATTNISIDAQQLSLSKKKG------KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              T+++ + Q+    K K       K+ ++ L K+M  AA  L FE+AA++RD I  LK
Sbjct: 597 --ATHVAEEEQKYRRKKVKTYDPEIIKSTIEQLEKEMKEAAIELQFEKAAKLRDVIFELK 654


>gi|301059008|ref|ZP_07199974.1| excinuclease ABC, B subunit [delta proteobacterium NaphS2]
 gi|300446889|gb|EFK10688.1| excinuclease ABC, B subunit [delta proteobacterium NaphS2]
          Length = 663

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/655 (56%), Positives = 478/655 (72%), Gaps = 1/655 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++Q+++ P GDQP AI  L +GI    + Q+LLGVTGSGKTFTMA  I    R  +V+
Sbjct: 1   MFKLQSEFSPRGDQPQAIDALAEGITKGMRHQVLLGVTGSGKTFTMAHTIARTGRTTLVI 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E    FP NAV YFVSYYDYYQPEAY+P++DTYI+K+S IN+QID+MR
Sbjct: 61  APNKTLAAQLYGELHGLFPENAVHYFVSYYDYYQPEAYIPQSDTYIQKDSHINDQIDKMR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+ATR+LL+R+D I+V+SVSCIYG+GS E+Y  M++ L+ G ++ +++ +  LV+ QY+R
Sbjct: 121 HAATRALLDRDDVIIVASVSCIYGLGSPETYYDMLLYLETGSTLPREDAVKKLVEIQYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+   RG FRV GD ++I+P H ED A RV  FG+++E I E  PLTG+ +  +  I +
Sbjct: 181 GDMDFYRGRFRVRGDVLDIYPVHEEDRAVRVHFFGDEVEAIQEIDPLTGKTVAALSRIAV 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVT     + A++ IK EL  RL  L +E +LLEAQRLE+R  +DLEM+   G C
Sbjct: 241 YPATHYVTTTDIRDRAVEQIKSELTDRLAHLHEENKLLEAQRLEERTRFDLEMMSELGYC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LTGR  GEPPPTL +Y PED LL +DESH+TIPQ++GMYRGD  RK TL +
Sbjct: 301 HGIENYSLHLTGRQAGEPPPTLLDYFPEDYLLIIDESHITIPQLNGMYRGDRSRKETLVQ 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+       + VSATPG WEL++ +  IVEQIIRPTGLVDP +
Sbjct: 361 YGFRLPSALDNRPLRFEEFESRVNQAVYVSATPGPWELDRTES-IVEQIIRPTGLVDPEI 419

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R A  QV+D+   I     +  R+L+T LTKRMAEDLTEY  E +IRVRYMHS++KTL
Sbjct: 420 EVRPAGNQVDDLLARIRDRVARNERVLVTTLTKRMAEDLTEYYAELDIRVRYMHSDIKTL 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLR+G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT GRA+
Sbjct: 480 ERMEIIRDLRMGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTCGRAS 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN +VILY D +T S++ A+DE+ RRR  QL +N++H++ P++VK+ I  ++      
Sbjct: 540 RNVNGRVILYGDHVTGSMRRAMDESNRRRLLQLAYNREHDLTPETVKKNIDVILGSPYEA 599

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           D  T  ++ +A+   +S  + +  ++ L+ +MH AA  L FEEAA  RD IK L+
Sbjct: 600 DYVTVPMAAEAEAPWVSPDQLEEIVEELKGKMHDAAKKLAFEEAAVYRDRIKELE 654


>gi|324116202|gb|EGC10124.1| excinuclease ABC [Escherichia coli E1167]
          Length = 673

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/664 (56%), Positives = 481/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSCGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|89073356|ref|ZP_01159880.1| excinuclease ABC subunit B [Photobacterium sp. SKA34]
 gi|89050843|gb|EAR56317.1| excinuclease ABC subunit B [Photobacterium sp. SKA34]
          Length = 675

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/670 (54%), Positives = 489/670 (72%), Gaps = 20/670 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + ++Y PSGDQP AIAQL+ G+ S    Q LLGVTGSGKTFT+A VI    RP +++
Sbjct: 4   LFSLASEYSPSGDQPTAIAQLVDGLDSGLAHQTLLGVTGSGKTFTVANVIGQANRPTLIL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K FFP++AVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR
Sbjct: 64  APNKTLAAQLYGEMKEFFPNSAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+++SVS IYG+G  +SY +M++ ++ GD ++Q+++L  L + QY R
Sbjct: 124 LSATKALMERRDVIIIASVSAIYGLGDPDSYLKMMLHVRRGDFLDQRDILRRLAELQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIK 378
            D+   RGTFRV G+ I+IFP+  E  A R+ +F +++E IS F PLTG    R++    
Sbjct: 184 NDMAFERGTFRVRGEVIDIFPAESEKEAIRLELFDDEVECISSFDPLTGSITHRDMPRAT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  A++ IK+EL +R  +     +LLE QR+ QR  +D+EM+   G 
Sbjct: 244 IYPKTHYVTPREKILDAIEGIKKELVLRKEQFLSNNKLLEEQRISQRTQFDIEMMNELGF 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+ QI  MYRGD  RK  L 
Sbjct: 304 CSGIENYSRYLSGRAEGEPPPTLFDYLPADGLLIIDESHVTVSQIGAMYRGDRSRKENLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP++FEE+  L P TI VSATPG++E+E+    I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPMKFEEFESLAPQTIYVSATPGNYEIEKSGNDIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI++  ++G R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ T
Sbjct: 424 IEVRPVGTQVDDLLSEIHIREKKGERVLVTTLTKRMAEDLTEYLTEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  + ILY D IT S++ AI+ET RRREKQ+E+N +H I PQ + +KI ++     L
Sbjct: 544 ARNIEGRAILYGDRITGSMERAINETQRRREKQIEYNLEHGITPQKLNKKIGDI-----L 598

Query: 739 EDAATT------NISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           E  A++      N + D  ++        +LS ++ ++ ++ L KQM+  A NL FE+AA
Sbjct: 599 ELGASSSRGKSRNKAADLHKVAESKGTYSALSPQELESQIQVLEKQMYDFAQNLEFEQAA 658

Query: 785 RIRDEIKRLK 794
             RD+I +L+
Sbjct: 659 ETRDKIHKLR 668


>gi|78067007|ref|YP_369776.1| excinuclease ABC subunit B [Burkholderia sp. 383]
 gi|77967752|gb|ABB09132.1| Excinuclease ABC subunit B [Burkholderia sp. 383]
          Length = 707

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  
Sbjct: 24  DESKFVTFEGSPFQLYQPYPPAGDQPTAIETLVEGVEDGLSFQTLLGVTGSGKTFTMANT 83

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 84  IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 143

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 144 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRAGDKLGQRDV 203

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 204 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAELAVRVELFDDEVETLQLFDPLTG 263

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK+EL+ RL     +G+L+EAQRLEQR  +
Sbjct: 264 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHSDGKLVEAQRLEQRTRF 323

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G +PG+PPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 324 DLEMLQELGFCKGIENYSRHFSGASPGDPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 383

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ+
Sbjct: 384 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQV 442

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A +QV+DV  EIN   +   R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 443 VRPTGLVDPEIEVRPASSQVDDVLAEINARVKAEERVLITVLTKRMAEQLTEFLADHGVK 502

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 503 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 562

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYAD +T+S++ AI ET RRR KQ+ HN+K  I P+ V ++
Sbjct: 563 RSLIQTIGRAARNVNGKAILYADNMTESMKRAIGETERRRAKQIAHNEKMGITPRGVVKR 622

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 623 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAA 681

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
             RD++  L+   +   + D
Sbjct: 682 STRDQLALLRERVFGANVGD 701


>gi|186476713|ref|YP_001858183.1| excinuclease ABC subunit B [Burkholderia phymatum STM815]
 gi|184193172|gb|ACC71137.1| excinuclease ABC, B subunit [Burkholderia phymatum STM815]
          Length = 697

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/679 (54%), Positives = 491/679 (72%), Gaps = 8/679 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    F++   Y P+GDQPAAI  L++G+      Q LLGVTGSGKT+TMA  
Sbjct: 14  DESKFVTFDGSPFRLYQPYPPAGDQPAAIQTLVEGVEDGLSFQTLLGVTGSGKTYTMANT 73

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 74  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 133

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 134 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKMGQRDI 193

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RG+FRV GD+I+IFP+   ++A RV +F ++I+ +  F PLTG
Sbjct: 194 IARLIAMQYNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEIDTLQLFDPLTG 253

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK EL+ RL     +G+L+EAQRLEQR  +
Sbjct: 254 RVRQKIPRFTVYPSSHYVTPRETVMRAVETIKSELRDRLEFFYNDGKLVEAQRLEQRTRF 313

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+++F+DESHV I Q++GMY 
Sbjct: 314 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPTDAIMFLDESHVLIGQLNGMYN 373

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G + EQ+
Sbjct: 374 GDRARKENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-KKTAGQVAEQV 432

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +++R ARTQV+DV  EIN     G R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 433 VRPTGLVDPEIDVRPARTQVDDVLAEINERVAAGDRVLVTVLTKRMAEQLTEFLADHGVK 492

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 493 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 552

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYAD IT S++ AIDET RRR KQ+  N++  I P+ V ++
Sbjct: 553 RSLIQTIGRAARNVNGKAILYADKITDSMKRAIDETERRRAKQIAFNEQMGIVPRGVVKR 612

Query: 729 IMEVIDPILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           I ++ID +   D A   +    + A+   +S+K+    +K L KQM   A NL FE+AA+
Sbjct: 613 IKDIIDGVYNVDEARAELKEQQVRAKFEDMSEKQIAKEIKRLEKQMMEHAKNLEFEKAAQ 672

Query: 786 IRDEIKRLKSSPYFQGLDD 804
           +RD++  L+   +   + D
Sbjct: 673 MRDQLALLRERVFGANVGD 691


>gi|197116550|ref|YP_002136977.1| excinuclease ABC subunit B [Geobacter bemidjiensis Bem]
 gi|197085910|gb|ACH37181.1| excinuclease ABC, B subunit [Geobacter bemidjiensis Bem]
          Length = 662

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/661 (55%), Positives = 479/661 (72%), Gaps = 3/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ T + P GDQP AIA+L  G+   +  Q+LLGVTGSGKTFTMA+VI     P +V+A
Sbjct: 4   FELVTSFEPRGDQPRAIAELADGVLRGDPHQVLLGVTGSGKTFTMAQVIARCNCPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK  FP+NAVEYFVSYYDYYQPEAY+P +DT+IEK+SSIN++ID+ RH
Sbjct: 64  PNKTLAAQLYGEFKELFPNNAVEYFVSYYDYYQPEAYIPSSDTFIEKDSSINDEIDKFRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL R D I+V+SVSCIYGIGS ESY +M ++ + GD V + E+L  LV  QY+R 
Sbjct: 124 SATRSLLTRRDVIIVASVSCIYGIGSPESYQEMQIRFREGDEVGRDEMLQRLVAIQYQRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++E+FP+H ++ A R+  FG+ ++ ISE  PL G +++ +    IY
Sbjct: 184 DVDFHRGSFRVRGDTVEVFPAHDDERALRIEFFGDTVDAISEIDPLRGVQLQKLSRCAIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  R TL  A++ I+ EL+ RL     +  LLEAQR+EQR  +D+EM+E  G CQ
Sbjct: 244 PASHYVASRQTLERAVEQIRLELEERLRYFNSQNMLLEAQRIEQRTFFDIEMMEEMGFCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GR  GEPP TL +Y P+D LL +DESH+T+ Q+ GMYRGD  RK TL  Y
Sbjct: 304 GIENYSRHFDGRAAGEPPYTLIDYFPKDFLLVIDESHITVSQVGGMYRGDRSRKETLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+      TI VSATP  +EL+  +G++VEQ+IRPTGL+DP +E
Sbjct: 364 GFRLPSALDNRPLTFQEFQKKLHQTIYVSATPADYELKLAEGVVVEQLIRPTGLIDPAIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D+  E    A +G R+L+T LTKRMAE+LT+Y  E  IRVRY+HS++ T +
Sbjct: 424 VRPAAGQVDDLLHEARETAARGERVLVTTLTKRMAEELTDYYRELGIRVRYLHSDIDTFQ 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG+FD+LVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQT GRAAR
Sbjct: 484 RMEILRDLRLGEFDLLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTCGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V++YAD +T S+Q AIDET RRR  Q  +N++H I P+SV+  I  V+     +D
Sbjct: 544 NVSGRVLMYADKVTGSMQAAIDETLRRRALQTAYNEEHGITPESVRRMIGNVLQAPEEKD 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
             T   S  A++  LS K+ +  LK LRK+M  AA    FE AA +RD+IKRL+ +   +
Sbjct: 604 WVTVPAS--AEEF-LSVKELEKTLKRLRKEMLAAAKAQEFERAAELRDKIKRLEVAEITR 660

Query: 801 G 801
           G
Sbjct: 661 G 661


>gi|110640983|ref|YP_668711.1| excinuclease ABC subunit B [Escherichia coli 536]
 gi|218688564|ref|YP_002396776.1| excinuclease ABC subunit B [Escherichia coli ED1a]
 gi|300992210|ref|ZP_07179819.1| excinuclease ABC subunit B [Escherichia coli MS 200-1]
 gi|122958476|sp|Q0TJR9|UVRB_ECOL5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|254764907|sp|B7MQN2|UVRB_ECO81 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|110342575|gb|ABG68812.1| excinuclease ABC subunit B [Escherichia coli 536]
 gi|218426128|emb|CAR06948.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli ED1a]
 gi|300305373|gb|EFJ59893.1| excinuclease ABC subunit B [Escherichia coli MS 200-1]
 gi|324011075|gb|EGB80294.1| excinuclease ABC subunit B [Escherichia coli MS 60-1]
          Length = 673

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/664 (56%), Positives = 480/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
             L+
Sbjct: 663 HLLR 666


>gi|229591636|ref|YP_002873755.1| excinuclease ABC subunit B [Pseudomonas fluorescens SBW25]
 gi|229363502|emb|CAY50736.1| excinuclease ABC subunit B [Pseudomonas fluorescens SBW25]
          Length = 671

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/669 (54%), Positives = 483/669 (72%), Gaps = 22/669 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI Q+++GI +    Q LLGVTGSGKTF++A VI  + RP +V+A
Sbjct: 4   FQLVTRFEPAGDQPEAIRQMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQINRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ELL  L   QY R 
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRELLRRLTSLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+I+P+  +  A R+ +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A++ IK EL  RL  L    +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLMGAIEGIKVELAERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTL++Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRESGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G ++EQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVIEQLVRPTGLVDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  EI        R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ T+E
Sbjct: 423 IRPALTQVDDLLSEITKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD IT S++ AI ET RRR+KQ+  N ++ I P+ V + + +++      +
Sbjct: 543 NLNGRAILYADRITGSMERAIGETQRRRDKQIAFNLENGITPKGVFKDVADIM------E 596

Query: 741 AATTNISIDAQQLSLSKKKGKA---------------HLKSLRKQMHLAADNLNFEEAAR 785
            AT   S   ++  ++K   ++                ++ L ++M+  A +L FE AA+
Sbjct: 597 GATVPGSRSKKRKGMAKAAEESAKYENELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQ 656

Query: 786 IRDEIKRLK 794
            RDEI +L+
Sbjct: 657 TRDEIGKLR 665


>gi|127512992|ref|YP_001094189.1| excinuclease ABC subunit B [Shewanella loihica PV-4]
 gi|126638287|gb|ABO23930.1| Excinuclease ABC subunit B [Shewanella loihica PV-4]
          Length = 672

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/670 (55%), Positives = 477/670 (71%), Gaps = 21/670 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AI QL+ G+ +    Q LLGVTGSGKTFT+A VI+ MQRP I+MA
Sbjct: 6   FDLVSQYAPAGDQPGAIKQLVDGLDAGLANQTLLGVTGSGKTFTIANVIKQMQRPTIIMA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP T+T+IEK++S+N  I++MR 
Sbjct: 66  PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTNTFIEKDASVNAHIEQMRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++++SVS IYG+G  ESY +M++ L+ GD + Q+E+L  L + QY R 
Sbjct: 126 SATKALLERRDVVLIASVSAIYGLGDPESYMKMLLHLRQGDFMGQREILQRLSELQYTRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + RGTFRV G+ I+IFP+  +  A RV +F ++I+ +S F PLTG  ++ +    +Y
Sbjct: 186 DIELDRGTFRVRGEVIDIFPAESDKQAIRVELFDDEIDRLSLFDPLTGHILQRIARTTVY 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A + IK+EL+ R   L    +L+EAQR+ +R+ YD+EM+   G C 
Sbjct: 246 PKTHYVTPREKILAATEDIKQELRERKQYLLDNNKLIEAQRISERVQYDIEMMTELGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK  L EY
Sbjct: 306 GIENYSRYLSGRRPGEGPPTLLDYLPADGLLILDESHVTVPQIGAMYKGDRSRKMNLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATP  +EL++  G I EQ++RPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLKFEEFESLMPQTIFVSATPAQYELDKSDGEIAEQVVRPTGLLDPEIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  E N       R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ T+E
Sbjct: 426 VRPVAIQVDDLLSEANKRVAVNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDIDTVE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 486 RVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           NVN KVILYAD +TKS+  AI ET RRREKQ E N  + I P+ V +KI +V+D      
Sbjct: 546 NVNGKVILYADNMTKSMAKAIGETERRREKQREFNLANGITPKGVSKKIADVMDLGDYNE 605

Query: 735 ---PIL-----LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
               +L     + ++ TT    DA  LS         +  L K+MH  A +L FE+AA +
Sbjct: 606 HTAKVLPKYQKVAESRTTYAKQDASSLS-------HQIDELEKRMHQHARDLEFEQAAAL 658

Query: 787 RDEIKRLKSS 796
           RDE+  L+ +
Sbjct: 659 RDEVLALREA 668


>gi|227356683|ref|ZP_03841069.1| excinuclease ABC subunit B [Proteus mirabilis ATCC 29906]
 gi|227163191|gb|EEI48122.1| excinuclease ABC subunit B [Proteus mirabilis ATCC 29906]
          Length = 669

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/660 (56%), Positives = 475/660 (71%), Gaps = 6/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P GDQP AIA L +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHSEFKPGGDQPTAIASLCEGLEDGLAHQTLLGVTGSGKTFTIANVIANLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYSEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVVSSVS IYG+G  +SY +M++ L  G  ++Q+ +L  L   QY R 
Sbjct: 125 SATKALLERKDVIVVSSVSAIYGLGDPDSYLKMMLHLSNGMIIDQRAILRRLADLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A RV +F  ++E +S F PLTGQ   NV    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSLFDPLTGQIHYNVPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK+EL  R   L    +L+E QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILDAMEKIKQELAERRKVLLANDKLVEEQRVTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    IVEQ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYELEKSGNDIVEQVVRPTGLLDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRIRAAKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N+  K ILY D IT S+  AI ET RRREKQ + N +H I P+ + +KI +++    P  
Sbjct: 545 NLEGKAILYGDKITDSMAKAIGETERRREKQQQFNLEHGIVPKGLNKKIGDILKIGQPTQ 604

Query: 738 LEDAATTNISIDAQQ--LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             +      ++D  +    LS  + +  ++ L  +M+  A +L FE+AA+ RD+++ L++
Sbjct: 605 GRNKKGHK-AVDTHEDYPLLSTAELEKEIQRLETEMYQHAKDLEFEKAAQTRDKLQTLRA 663


>gi|307730290|ref|YP_003907514.1| excinuclease ABC subunit B [Burkholderia sp. CCGE1003]
 gi|307584825|gb|ADN58223.1| excinuclease ABC, B subunit [Burkholderia sp. CCGE1003]
          Length = 697

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/679 (54%), Positives = 486/679 (71%), Gaps = 8/679 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK + F    FQ+   Y P+GDQP AI  L++GI      Q LLGVTGSGKTFTMA  
Sbjct: 14  DESKFVRFEGSPFQLYQPYPPAGDQPTAIDTLVEGIEDGLSFQTLLGVTGSGKTFTMANT 73

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 74  IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 133

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 134 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDRLGQRDI 193

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RG+FRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 194 IARLIAMQYNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 253

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK EL+ RL     EG+L+EAQRLEQR  +
Sbjct: 254 RVRQKIPRFTVYPSSHYVTPRDTVVRAVETIKAELRERLEFFYSEGKLVEAQRLEQRTRF 313

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+++ +DESHV I Q++GMY 
Sbjct: 314 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDAIMLLDESHVLIGQLNGMYN 373

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L +YGFRLPS +DNRPL+F E+       + V+ATP  +E ++  G + EQ+
Sbjct: 374 GDRARKENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVTATPAEYE-KKTSGQVAEQL 432

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R AR+QV+DV  EIN     G R+L+TVLTKRMAE LTE+L +  I+
Sbjct: 433 VRPTGLVDPEIEVRPARSQVDDVLAEINERVAAGDRVLVTVLTKRMAEQLTEFLADHGIK 492

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 493 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 552

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYAD +T S++ AIDET RRR KQ+  N +H I P+ V ++
Sbjct: 553 RSLIQTIGRAARNVNGKAILYADKVTDSMRRAIDETERRRAKQIAFNLEHGITPRGVVKR 612

Query: 729 IMEVIDPILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           I ++ID +   D A   +      A+   +S+K+    LK L KQM   A NL FE+AA+
Sbjct: 613 IRDIIDGVYNVDDARAELKEQQTRAKFEDMSEKQLAKELKRLEKQMMEHAKNLEFEKAAQ 672

Query: 786 IRDEIKRLKSSPYFQGLDD 804
            RD++  L+   +   + D
Sbjct: 673 TRDQLALLRQRVFGANVGD 691


>gi|254185290|ref|ZP_04891878.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1655]
 gi|184209525|gb|EDU06568.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1655]
          Length = 696

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y PSGDQP AIA L++G+      Q LLGVTGSGKT+TMA  
Sbjct: 13  DESKFVTFEGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANT 72

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 73  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+
Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREV 192

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG
Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTG 252

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+ +EAQRLEQR  +
Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKFVEAQRLEQRTRF 312

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G   EQ+
Sbjct: 373 GDRARKENLVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVSGQTAEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 432 VRPTGLVDPQIEVRPASTQVDDVLSEITERVKANERVLITVLTKRMAEQLTEFLADHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N+K  I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
           + RD++  L+   +   + D
Sbjct: 671 QTRDQLALLRERVFGANVGD 690


>gi|119774963|ref|YP_927703.1| excinuclease ABC subunit B [Shewanella amazonensis SB2B]
 gi|119767463|gb|ABM00034.1| Excinuclease ABC subunit B [Shewanella amazonensis SB2B]
          Length = 672

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/665 (55%), Positives = 481/665 (72%), Gaps = 15/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AIA+L+ G+ S    Q LLGVTGSGKTFT+A VI  + RP I+MA
Sbjct: 6   FQLSSHYSPAGDQPTAIAKLIDGLESGLACQTLLGVTGSGKTFTVANVIATLGRPTIIMA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++MR 
Sbjct: 66  PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQMRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 126 SATKALLERRDVIIVASVSAIYGLGDPDSYMKMLLHLRQGDFMGQRDILRRLSELQYSRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + RGTFRV G+ I+IFP+  E  A RV +F ++IE ISEF PLTGQ  + +    +Y
Sbjct: 186 DIDLQRGTFRVRGEVIDIFPADSERDAIRVELFDDEIERISEFDPLTGQVTKRLARATVY 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A+  IK+EL++R  +     +L+EAQR+ +R+ YD+EM+   G C 
Sbjct: 246 PKTHYVTPREKILEAIDQIKDELRVRKQQFLDNHKLIEAQRITERVQYDVEMMTELGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GE PPTL +Y+P D L+ +DESH T+PQI  MY+GD  RK TL EY
Sbjct: 306 GIENYSRYLSGRAEGEGPPTLLDYLPADGLMIIDESHNTVPQIGAMYKGDRSRKTTLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG +ELE+    I EQ++RPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLKFEEFESLMPQTIFVSATPGKYELEKSGDDIAEQVVRPTGLIDPELE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  E+        R+L+T LTKRMAEDLT+YL E  ++VRY+HS++ T+E
Sbjct: 426 VRPVAIQVDDLLSEVAKRVAVNERVLVTTLTKRMAEDLTDYLDEHGVKVRYLHSDIDTVE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 486 RMEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN KVILYAD IT S+  A+ ET RRR KQ++ N++H I P+ V +KI +V+D  + E 
Sbjct: 546 NVNGKVILYADRITDSMARAMAETERRRTKQMQFNEEHGIIPRGVVKKITDVMD--VGER 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLK-----------SLRKQMHLAADNLNFEEAARIRDE 789
           +A +  ++ A     S+  GK  ++           +L KQMH  A +L FE+AA +RDE
Sbjct: 604 SAPSRGAVKAS--GRSRDVGKPSMRQDPHQIAVTIDALEKQMHQHARDLEFEQAAALRDE 661

Query: 790 IKRLK 794
           I  L+
Sbjct: 662 IHGLR 666


>gi|167584790|ref|ZP_02377178.1| excinuclease ABC, B subunit [Burkholderia ubonensis Bu]
          Length = 696

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y P+GDQP AIA L++GI      Q LLGVTGSGKTFTMA  
Sbjct: 13  DESKFVTFEGSPFQLYQPYPPAGDQPTAIATLVEGIEDGLSFQTLLGVTGSGKTFTMANT 72

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 73  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+
Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQREV 192

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK+EL+ RL     + +L+EAQRLEQR  +
Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHADNKLVEAQRLEQRTRF 312

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ+
Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSATPADYE-KRVTGQIAEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A +QV+DV  EIN   +   R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLTEINARVKAEERVLITVLTKRMAEQLTEFLADHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYADT+T+S++ AI ET RRR KQ+ +N++  I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAYNEQMGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
             RD++  L+   +   + D
Sbjct: 671 ATRDQLALLRERVFGANVGD 690


>gi|170733570|ref|YP_001765517.1| excinuclease ABC subunit B [Burkholderia cenocepacia MC0-3]
 gi|169816812|gb|ACA91395.1| excinuclease ABC, B subunit [Burkholderia cenocepacia MC0-3]
          Length = 696

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/680 (54%), Positives = 491/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  
Sbjct: 13  DESKFVTFEGSPFQLYQPYPPAGDQPTAIDTLVEGVGDGLAFQTLLGVTGSGKTFTMANT 72

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 73  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRAGDKLGQRDV 192

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 252

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +
Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRF 312

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PG+PPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGDPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 372

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ+
Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A +QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 432 VRPTGLVDPEIEVRPASSQVDDVLTEINARVKAGERVLITVLTKRMAEQLTEFLADHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYAD +T+S++ AI ET RRR KQ+ +N+K  I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGKAILYADNMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
             RD++  L+   +   + D
Sbjct: 671 ATRDQLAVLRERVFGANVGD 690


>gi|295676090|ref|YP_003604614.1| excinuclease ABC, B subunit [Burkholderia sp. CCGE1002]
 gi|295435933|gb|ADG15103.1| excinuclease ABC, B subunit [Burkholderia sp. CCGE1002]
          Length = 697

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/679 (54%), Positives = 486/679 (71%), Gaps = 8/679 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK ITF    F++   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  
Sbjct: 14  DESKFITFEGSPFKLYQPYPPAGDQPTAIETLVEGVGDGLAFQTLLGVTGSGKTFTMANT 73

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 74  IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 133

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 134 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDRLGQRDV 193

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RG+FRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 194 IARLIAMQYSRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 253

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK EL+ RL     EG+L+EAQRLEQR  +
Sbjct: 254 RVRQKIPRFTVYPSSHYVTPRDTVLRAVETIKAELRDRLEFFYSEGKLVEAQRLEQRTRF 313

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+++ +DESHV I Q++GMY 
Sbjct: 314 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAIMMLDESHVLIGQLNGMYN 373

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G + EQ+
Sbjct: 374 GDRARKENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-KKTSGQVAEQL 432

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R AR+QV+DV  EIN   + G R+L+T LTKRMAE LTE+L +  I+
Sbjct: 433 VRPTGLVDPEIEVRPARSQVDDVLGEINERIKAGDRVLVTTLTKRMAEQLTEFLADHGIK 492

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 493 VRYLHSDIDTVERVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 552

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYAD IT S++ AIDET RRR KQ+  N  H I P+ V ++
Sbjct: 553 RSLIQTIGRAARNVNGKAILYADNITDSMRRAIDETERRRAKQIAFNAAHGITPRGVVKR 612

Query: 729 IMEVIDPILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           I ++ID +   D A   +      A+   +S+K+    +K L KQM   A NL FE+AA+
Sbjct: 613 IRDIIDGVYNVDEARAELKEQQTRAKFEDMSEKQLAKEIKRLEKQMMEHAKNLEFEKAAQ 672

Query: 786 IRDEIKRLKSSPYFQGLDD 804
            RD++  L+   +   + D
Sbjct: 673 TRDQLALLRQRVFGANVGD 691


>gi|197122989|ref|YP_002134940.1| excinuclease ABC subunit B [Anaeromyxobacter sp. K]
 gi|196172838|gb|ACG73811.1| excinuclease ABC, B subunit [Anaeromyxobacter sp. K]
          Length = 699

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/662 (54%), Positives = 473/662 (71%), Gaps = 17/662 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q+ + P+GDQP AI +L  G+   E+ Q+LLGVTGSGKTFT+A V+  ++RP +V+A
Sbjct: 3   FDLQSAFQPTGDQPRAIGELTDGLRRGERHQVLLGVTGSGKTFTVANVVAEVKRPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK  FP  AV YFVSYYDYYQPEAYVP TDTYIEK+SSIN++IDRMRH
Sbjct: 63  HNKTLAAQLYAEFKELFPTAAVHYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDRMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL RND ++V+SVSCIYG+G+ E+Y  ++ +L+ G    +   + SL+  QY+R 
Sbjct: 123 AATHALLTRNDVLIVASVSCIYGLGTAEAYHGLLQRLERGQEFLRDRFIRSLIDIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+IE+FP + ED A R+  FG+ +E I EF PL G  +  ++ + I+
Sbjct: 183 DLDFHRGTFRVRGDTIEVFPPYEEDRAVRIEFFGDVVESIHEFDPLRGVTLAELDKVAIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHYV+       A+  ++EEL+ RL EL+   +L+EAQRLEQR  +DLEMLE  G C 
Sbjct: 243 PNSHYVSAPEVRARAIAGVREELRERLGELKAANKLVEAQRLEQRTMFDLEMLEQMGFCP 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  G+PPP L +Y P+D LL +DESH T+PQI  MYRGD  RK TL E+
Sbjct: 303 GIENYSRWLSGRKAGDPPPCLLDYFPKDFLLVIDESHQTVPQIGSMYRGDRSRKETLVEF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L    I VSATP ++ELEQ QG++VEQ+IRPTGLVDP +E
Sbjct: 363 GFRLPSALDNRPLKFEEFQALVRQAIYVSATPAAYELEQAQGVVVEQLIRPTGLVDPQIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   +QV+D+  E+   A+ G R+L+T LTKRMAEDLTEY  +  +R RY+HS++ TLE
Sbjct: 423 VRPVGSQVDDLLGEVRKRAEAGERVLVTTLTKRMAEDLTEYFTDVGVRCRYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  +IRDLR G+FDVL+GINLLREGLDIPE  LVA+LDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RSAVIRDLRRGEFDVLIGINLLREGLDIPEVSLVAVLDADKEGFLRSAVSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +V+LYAD IT S++ AIDET RRRE Q  +N +H I P +VK  I          D
Sbjct: 543 NVNGRVLLYADAITASMRQAIDETGRRREIQERYNAEHGITPTTVKRNI---------SD 593

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                +  D   + L+ ++G  +        + +L ++M  AA  L FE+AA++RD ++ 
Sbjct: 594 LGMAVVEADYVTVPLAAEEGAEYRPEQLPEIVAALEREMQDAARALEFEKAAQLRDRVQA 653

Query: 793 LK 794
           LK
Sbjct: 654 LK 655


>gi|82776151|ref|YP_402498.1| excinuclease ABC subunit B [Shigella dysenteriae Sd197]
 gi|309786573|ref|ZP_07681196.1| excinuclease ABC, B subunit [Shigella dysenteriae 1617]
 gi|90111051|sp|Q32I48|UVRB_SHIDS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|81240299|gb|ABB61009.1| excision nuclease subunit B [Shigella dysenteriae Sd197]
 gi|308925636|gb|EFP71120.1| excinuclease ABC, B subunit [Shigella dysenteriae 1617]
          Length = 673

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/664 (56%), Positives = 480/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K     +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALLQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|90579146|ref|ZP_01234956.1| excinuclease ABC subunit B [Vibrio angustum S14]
 gi|90439979|gb|EAS65160.1| excinuclease ABC subunit B [Vibrio angustum S14]
          Length = 675

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/665 (54%), Positives = 487/665 (73%), Gaps = 10/665 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + ++Y PSGDQP AIAQL+ G+ S    Q LLGVTGSGKTFT+A VI    RP +++
Sbjct: 4   LFSLASEYSPSGDQPTAIAQLVDGLDSGLAHQTLLGVTGSGKTFTVANVIAQANRPTLIL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K FFP++AVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR
Sbjct: 64  APNKTLAAQLYGEMKEFFPNSAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+++SVS IYG+G  +SY +M++ ++ GD ++Q+++L  L + QY R
Sbjct: 124 LSATKALMERRDVIIIASVSAIYGLGDPDSYLKMMLHVRRGDFLDQRDILRRLAELQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIK 378
            D+   RGTFRV G+ I+IFP+  E  A R+ +F +++E IS F PLTG    R++    
Sbjct: 184 NDMAFERGTFRVRGEVIDIFPAESEKEAIRLELFDDEVECISSFDPLTGSITHRDMPRTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  A++ IK+EL +R  +     +LLE QR+ QR  +D+EM+   G 
Sbjct: 244 IYPKTHYVTPREKILDAIEGIKKELVLRKEQFLGNNKLLEEQRISQRTQFDIEMMNELGF 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+ QI  MYRGD  RK  L 
Sbjct: 304 CSGIENYSRYLSGRAEGEPPPTLFDYLPADGLLIIDESHVTVSQIGAMYRGDRSRKENLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP++FEE+  L P TI VSATPG++E+E+    I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPMKFEEFESLAPQTIYVSATPGNYEIEKSGNDIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI++  ++G R+L+T LTKRMAEDLTEYL +  ++VRY+HS++ T
Sbjct: 424 IEVRPVGTQVDDLLSEIHIREKKGERVLVTTLTKRMAEDLTEYLTDHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-PIL 737
           ARNV  K ILY D IT S++ AI+ET RRREKQ+E+N +H I PQ + +KI ++++    
Sbjct: 544 ARNVEGKAILYGDRITGSMERAINETQRRREKQIEYNLEHGITPQKLNKKIGDILELGAP 603

Query: 738 LEDAATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                + N + D  ++        +LS ++ ++ ++ L KQM+  A NL FE+AA  RD+
Sbjct: 604 SSRGKSRNKAADLHKVAESKGTYSALSPQELESQIQVLEKQMYDFAQNLEFEQAAETRDK 663

Query: 790 IKRLK 794
           I +L+
Sbjct: 664 IHKLR 668


>gi|167578839|ref|ZP_02371713.1| excinuclease ABC subunit B [Burkholderia thailandensis TXDOH]
          Length = 696

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/680 (54%), Positives = 489/680 (71%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y PSGDQP AIA L++G+      Q LLGVTGSGKT+TMA  
Sbjct: 13  DESKFVTFEGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANT 72

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 73  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+
Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREV 192

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG
Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTG 252

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +
Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRF 312

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYN 372

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G   EQ+
Sbjct: 373 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVSGQTAEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 432 VRPTGLVDPEIEVRPASTQVDDVLSEITERVKADERVLITVLTKRMAEQLTEFLADHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N +  I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNHERGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
           + RD++  L+   +   + D
Sbjct: 671 QTRDQLALLRERVFGANVGD 690


>gi|296269463|ref|YP_003652095.1| excinuclease ABC subunit B [Thermobispora bispora DSM 43833]
 gi|296092250|gb|ADG88202.1| excinuclease ABC, B subunit [Thermobispora bispora DSM 43833]
          Length = 702

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/678 (54%), Positives = 493/678 (72%), Gaps = 25/678 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ TD  PSGDQPAAIA+L + I + EK  +LLG TG+GKT T+A +IE +QRP +V+ 
Sbjct: 14  FQVVTDMTPSGDQPAAIAELERRIKAGEKDIVLLGATGTGKTATIAWLIERVQRPTLVIE 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ  +E +   PHNAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSINE+++R+RH
Sbjct: 74  PNKTLAAQFANELRTMLPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ R D +VV+SVSCIYG+G+ E Y+  +++LK+G  +++ +LL  LV  QY R 
Sbjct: 134 SATWSLISRRDVVVVASVSCIYGLGTPEEYANRMLRLKVGQEIDRDQLLRRLVDMQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+IE+ P + +++A R+ MFG++IE +   +PLTG+ +   + + I 
Sbjct: 194 DVSFTRGTFRVRGDTIEVIPVY-QELAVRIEMFGDEIERLCTLHPLTGEVLGEDDEVPIL 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I+ EL  RL ELE++G+LLEAQRL  R TYD+EM+   G+C 
Sbjct: 253 PASHYVAGPERMERAIASIEAELAERLAELERQGKLLEAQRLRMRTTYDIEMMRQIGTCS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESH T+PQI  MY GD  RK TL E+
Sbjct: 313 GIENYSRHIDGRPPGSPPHTLLDYFPEDFLLVLDESHQTVPQIGAMYEGDASRKRTLVEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL++EE+      T+ +SATPG +E+ +CQG +VE +IRPTGLVDP + 
Sbjct: 373 GFRLPSALDNRPLKWEEFLERIGQTVYLSATPGPYEMSRCQGDVVELVIRPTGLVDPEIV 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ +EI + A++G R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 433 VKPTKGQIDDLMEEIRVRAERGERVLVTTLTKKMAEDLTDYLLENGIRVRYLHSEVDTLR 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIE++R+LR G +DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS+TSLIQ IGRAAR
Sbjct: 493 RIELLRELRQGDYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSETSLIQMIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V+ +V +YAD IT ++Q AIDET RRR KQL +NK H I+P+ +++KI +++D ++ ED
Sbjct: 553 HVSGQVHMYADKITPAMQRAIDETNRRRAKQLAYNKAHGIDPKPLRKKIADILDTLVRED 612

Query: 741 AATTNISIDAQQLS---------LSKKKGK---------------AHLKSLRKQMHLAAD 776
           A T  +  + +Q +         LS+  GK               A ++SL +QM  AA 
Sbjct: 613 ADTAQLLGNGRQQARGKAPVPGVLSQTPGKHAKEIVGEMPREQLEALIESLTEQMRAAAA 672

Query: 777 NLNFEEAARIRDEIKRLK 794
           +L FE AAR+RDEIK LK
Sbjct: 673 DLQFELAARLRDEIKELK 690


>gi|86147958|ref|ZP_01066262.1| excinuclease ABC subunit B [Vibrio sp. MED222]
 gi|85834283|gb|EAQ52437.1| excinuclease ABC subunit B [Vibrio sp. MED222]
          Length = 676

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/669 (54%), Positives = 487/669 (72%), Gaps = 17/669 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + +DY PSGDQP AI +LL G+ S    Q LLGVTGSGKTFT+A VI   QRPAI++
Sbjct: 4   LFDLVSDYSPSGDQPTAITKLLDGLDSGLAHQTLLGVTGSGKTFTLANVISQSQRPAILL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR
Sbjct: 64  APNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER D I+V+SVS IYG+G  +SY +M++ L  G+ ++Q+++L  L + QY R
Sbjct: 124 LSATKALLERKDAIIVASVSAIYGLGDPKSYLKMMLHLSRGEVMDQRDILRRLAELQYSR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIK 378
            D+   RG FRV G+ I+IFP+  +  A R+ MF ++++ IS F PLTG  K R++    
Sbjct: 184 NDVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEVDCISIFDPLTGAVKQRDLPRFT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A++ IK+EL+ R   L+   +LLE QR+ QR  +D+EM+   G 
Sbjct: 244 VYPKTHYVTPREKILEAIEKIKDELRDRAQYLKDNNKLLEEQRISQRTQFDIEMMTELGF 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GE PPTLF+Y+P+D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAEGEAPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKETLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPS +DNRP++FEE+  + P TI VSATPG++E+E+  G I +Q++RPTGL+DP 
Sbjct: 364 EFGFRLPSALDNRPMKFEEFESIAPQTIFVSATPGNYEIEKSDGEIADQVVRPTGLLDPI 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI + + +  R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ T
Sbjct: 424 IEVRPVATQVDDLLSEIRIRSVKEERVLVTTLTKRMAEDLTEYLSEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  + ILY D+ITKS++ AIDET RRREKQ  +N++  I PQ++K  I ++++   L
Sbjct: 544 ARNLEGRAILYGDSITKSMRKAIDETDRRREKQQAYNEEQGITPQALKRNIKDIME---L 600

Query: 739 EDAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAAR 785
            D   +     ++Q+ LSK             ++    +  L   M+  A NL FE AA+
Sbjct: 601 GDLTKSKQQRQSKQVPLSKVAEPSESYVVLTPQQLDKEISKLEAAMYQHAQNLEFELAAQ 660

Query: 786 IRDEIKRLK 794
            RDEI++L+
Sbjct: 661 KRDEIEQLR 669


>gi|323498199|ref|ZP_08103201.1| excinuclease ABC subunit B [Vibrio sinaloensis DSM 21326]
 gi|323316627|gb|EGA69636.1| excinuclease ABC subunit B [Vibrio sinaloensis DSM 21326]
          Length = 661

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/657 (56%), Positives = 480/657 (73%), Gaps = 17/657 (2%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQP AI QLL+G+ S    Q LLGVTGSGKTFT+A VI   QRPAI++APNK LAAQLY 
Sbjct: 1   DQPTAINQLLEGLDSGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLAPNKTLAAQLYG 60

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR SAT++LLER D
Sbjct: 61  EMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKD 120

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            I+V+SVS IYG+G  ESY QM++ ++ GD ++Q+++L  L + QY R D+   RG FRV
Sbjct: 121 AIIVASVSAIYGLGDPESYLQMMLHIRRGDVMDQRDILRRLAELQYSRNDVAFERGQFRV 180

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKIYANSHYVTPRP 390
            G+ I+IFP+  +  A R+ MF ++I+ IS F PLTG  K R++    IY  +HYVTPR 
Sbjct: 181 RGEVIDIFPAESDQDAVRIEMFDDEIDCISVFDPLTGVVKQRDLPRFTIYPKTHYVTPRE 240

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
            +  A+++IK EL+ R   L    +LLE QR+ QR  +D+EM+   G C  IENYSRYL+
Sbjct: 241 RILDAIEHIKLELESRKKHLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLS 300

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
           GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E+GFRLPS +DN
Sbjct: 301 GRQEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVEFGFRLPSALDN 360

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
           RP++FEE+  + P TI VSATPG++ELE+  G I +Q++RPTGL+DP +E+R   TQV+D
Sbjct: 361 RPMKFEEFESIAPQTIFVSATPGNYELEKSDGEIADQVVRPTGLLDPQLEVRPVATQVDD 420

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  EI + + Q  R+L+T LTKRMAEDLTEYL E ++RVRY+HS++ T+ER+EIIRDLRL
Sbjct: 421 LLSEIRIRSAQDERVLVTTLTKRMAEDLTEYLTEHDVRVRYLHSDIDTVERVEIIRDLRL 480

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAARN++ K ILYA
Sbjct: 481 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNISGKAILYA 540

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
           D+ITKS++ A+DET RRREKQ E+N K  I PQ++K  I ++++   L D   +     +
Sbjct: 541 DSITKSMKKAMDETNRRREKQQEYNTKMGIEPQALKRNIKDIME---LGDITKSKKQRAS 597

Query: 751 QQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + + LSK             ++    +  L  QM+  A +L FE AA  RD+I +L+
Sbjct: 598 KTVPLSKVAEPSQSYDVMTPQELDKEIAKLEAQMYQHAQDLEFELAAEKRDQIDKLR 654


>gi|84393387|ref|ZP_00992146.1| excinuclease ABC subunit B [Vibrio splendidus 12B01]
 gi|84375996|gb|EAP92885.1| excinuclease ABC subunit B [Vibrio splendidus 12B01]
          Length = 676

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/669 (54%), Positives = 488/669 (72%), Gaps = 17/669 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + +DY+PSGDQP AI +LL G+ S    Q LLGVTGSGKTFT+A VI   QRPAI++
Sbjct: 4   LFDLVSDYNPSGDQPTAITKLLDGLDSGLAHQTLLGVTGSGKTFTLANVISQSQRPAILL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K+FFP+N+VEYFVSYYDYYQPEAYVP TDT+IEK++SIN  I++MR
Sbjct: 64  APNKTLAAQLYGEMKSFFPNNSVEYFVSYYDYYQPEAYVPTTDTFIEKDASINAHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER D I+V+SVS IYG+G  +SY +M++ L  G+ ++Q+++L  L + QY R
Sbjct: 124 LSATKALLERKDAIIVASVSAIYGLGDPKSYLKMMLHLSRGEVMDQRDILRRLAELQYSR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIK 378
            D+   RG FRV G+ I+IFP+  +  A R+ MF ++++ IS F PLTG  K R++    
Sbjct: 184 NDVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEVDCISIFDPLTGAVKQRDLPRFT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A++ IK+EL+ R   L+   +LLE QR+ QR  +D+EM+   G 
Sbjct: 244 VYPKTHYVTPREKILEAIEKIKDELRDRAQYLKDNNKLLEEQRISQRTQFDIEMMTELGF 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GE PPTLF+Y+P+D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAEGEAPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKETLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPS +DNRP++FEE+  + P TI VSATPG++E+E+  G I +Q++RPTGL+DP 
Sbjct: 364 EFGFRLPSALDNRPMKFEEFESIAPQTIFVSATPGNYEIEKSDGEIADQVVRPTGLLDPI 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI + + +  R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ T
Sbjct: 424 IEVRPVATQVDDLLSEIRIRSVKEERVLVTTLTKRMAEDLTEYLSEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  + ILY D+ITKS++ AIDET RRREKQ  +N++  I PQ++K  I ++++   L
Sbjct: 544 ARNLEGRAILYGDSITKSMRKAIDETDRRREKQQAYNEEQGITPQALKRNIKDIME---L 600

Query: 739 EDAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAAR 785
            D   +     ++Q+ LSK             ++    +  L   M+  A NL FE AA+
Sbjct: 601 GDLTKSKQQRQSKQVPLSKVAEPSESYAVLTPQQLDKEISKLETAMYQHAQNLEFELAAQ 660

Query: 786 IRDEIKRLK 794
            RDEI++L+
Sbjct: 661 KRDEIEQLR 669


>gi|218708975|ref|YP_002416596.1| excinuclease ABC subunit B [Vibrio splendidus LGP32]
 gi|218321994|emb|CAV18011.1| UvrABC system protein B [Vibrio splendidus LGP32]
          Length = 676

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/669 (54%), Positives = 487/669 (72%), Gaps = 17/669 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + +DY PSGDQP AI +LL G+ S    Q LLGVTGSGKTFT+A VI   QRPAI++
Sbjct: 4   LFDLVSDYSPSGDQPTAITKLLDGLDSGLAHQTLLGVTGSGKTFTLANVISQSQRPAILL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR
Sbjct: 64  APNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER D I+V+SVS IYG+G  +SY +M++ L  G+ ++Q+++L  L + QY R
Sbjct: 124 LSATKALLERKDAIIVASVSAIYGLGDPKSYLKMMLHLSRGEVMDQRDILRRLAELQYSR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIK 378
            D+   RG FRV G+ I+IFP+  +  A R+ MF ++++ IS F PLTG  K R++    
Sbjct: 184 NDVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEVDCISIFDPLTGAVKQRDLPRFT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A++ IK+EL+ R   L+   +LLE QR+ QR  +D+EM+   G 
Sbjct: 244 VYPKTHYVTPREKILEAIENIKDELRDRAQYLKDNNKLLEEQRISQRTQFDIEMMTELGF 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GE PPTLF+Y+P+D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAEGEAPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKETLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPS +DNRP++FEE+  + P TI VSATPG++E+E+  G I +Q++RPTGL+DP 
Sbjct: 364 EFGFRLPSALDNRPMKFEEFESIAPQTIFVSATPGNYEIEKSDGEIADQVVRPTGLLDPI 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI + + +  R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ T
Sbjct: 424 IEVRPVATQVDDLLSEIRIRSVKEERVLVTTLTKRMAEDLTEYLSEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  + ILY D+ITKS++ AIDET RRREKQ  +N++  I PQ++K  I ++++   L
Sbjct: 544 ARNLEGRAILYGDSITKSMRKAIDETDRRREKQQAYNEEQGITPQALKRNIKDIME---L 600

Query: 739 EDAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAAR 785
            D   +     ++Q+ LSK             ++    +  L   M+  A NL FE AA+
Sbjct: 601 GDLTKSKQQRQSKQVPLSKVAEPSENYAVLTPQQLDKEISKLEAAMYQHAQNLEFELAAQ 660

Query: 786 IRDEIKRLK 794
            RDEI++L+
Sbjct: 661 KRDEIEQLR 669


>gi|108759548|ref|YP_630851.1| excinuclease ABC subunit B [Myxococcus xanthus DK 1622]
 gi|108463428|gb|ABF88613.1| excinuclease ABC, B subunit [Myxococcus xanthus DK 1622]
          Length = 704

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/656 (54%), Positives = 473/656 (72%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +++ P GDQP AI +L +G+   ++ Q LLGVTGSGKTFTMA +I  +QRP +VMA
Sbjct: 4   FQLVSEHSPGGDQPRAIGELTQGLLRGDRYQTLLGVTGSGKTFTMANIIANVQRPTLVMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK  FPHNAVEYFVSYYDYYQPEAYVP TDT+IEK+SSIN+ I+RMRH
Sbjct: 64  HNKTLAAQLYGEFKALFPHNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSINDNIERMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL  R+D I+V+SVSCIYG+G+  SY ++ V+  +G+ + +   +  LV+ QYKR 
Sbjct: 124 SATHSLRTRDDVIIVASVSCIYGLGAARSYVELAVRAAVGEEMGRDTFMRKLVEAQYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFR  GD++E+FP++ E+ A RVS FG+++E ++EF PL G  +  +E I I+
Sbjct: 184 DLDFHRGTFRARGDTVEVFPAYEEERAVRVSFFGDEVERVTEFDPLRGVTLGALEKIVIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV        A++ I++EL  +L   ++EG+LLEAQRLEQR  +DLEM+E  G C 
Sbjct: 244 PASHYVAEEDVRRRAIQTIRDELSEQLQTFKREGKLLEAQRLEQRAMFDLEMIEQVGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +GR  GEPPP L +Y P + L+ +DESH T+PQI  MYRGD  RK TL  +
Sbjct: 304 GIENYSRHFSGRAAGEPPPCLIDYFPRNLLVMLDESHQTVPQIGAMYRGDRARKETLVGF 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L P  I VSATP  +EL++ QG++VEQIIRPTGL DP VE
Sbjct: 364 GFRLPSALDNRPLKFGEFEELVPQAIFVSATPAEYELQKSQGVVVEQIIRPTGLTDPEVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+ +E+     +  R+L+T LTKRMAEDLTEY  +  +RVRY+HS++  +E
Sbjct: 424 IRPVGNQVDDLLEEVRQRVSRSERVLVTTLTKRMAEDLTEYFSDVGVRVRYLHSDIDAIE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ IIRDLR G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 484 RMAIIRDLRKGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHVSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739
           NV+ +VI+YAD +T S++ A++ETTRRR+ Q  +N++H I P+SVK  I ++ +    + 
Sbjct: 544 NVSGRVIMYADNVTDSMKKALEETTRRRDIQRAYNQEHGITPRSVKSNITDLSEHAAYDA 603

Query: 740 -DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            D     ++ + +   L  K+ K  ++   K M  AAD + FE+AA  RD ++ LK
Sbjct: 604 GDVGALPMAAEGEDDVLQPKEIKRLIEEFTKDMLAAADEMQFEKAAEYRDRVQLLK 659


>gi|153005353|ref|YP_001379678.1| excinuclease ABC subunit B [Anaeromyxobacter sp. Fw109-5]
 gi|152028926|gb|ABS26694.1| excinuclease ABC, B subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 729

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/654 (55%), Positives = 476/654 (72%), Gaps = 1/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++++ P+GDQP AI +L  G+   ++ Q+LLGVTGSGKTFT+A V+  ++RP +V+A
Sbjct: 33  FDLRSEFQPTGDQPRAIGELTAGLRRGDRHQVLLGVTGSGKTFTVANVVAELRRPTLVIA 92

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK  FP  AV YFVSYYDYYQPEAYVP TDTYIEK+SSIN++IDRMRH
Sbjct: 93  HNKTLAAQLYGEFKELFPSAAVHYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDRMRH 152

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL RND ++V+SVSCIYG+G+ E+Y  ++ Q++ G    +   + SL+  QY+R 
Sbjct: 153 AATHALLTRNDVLIVASVSCIYGLGTAEAYFGLLQQIERGQEFVRDRFIRSLIDIQYERN 212

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+IE+FP + ED A R+  FG+ +E I EF PL G  +  V+ + I+
Sbjct: 213 DVDFHRGTFRVRGDTIEVFPPYEEDRAVRIEFFGDVVESIHEFDPLRGVTLAEVDKVAIF 272

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHYV+   T   A+  ++EEL+ RL EL+   +L+EAQRLEQR  +DLEMLE  G C 
Sbjct: 273 PNSHYVSAPETRKRAVDGVREELRERLGELKAANKLVEAQRLEQRTMFDLEMLEQMGFCP 332

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  G+PPP L +Y P+D L+ VDESH TIPQI  MYRGD  RK TL E+
Sbjct: 333 GIENYSRWLSGRKAGDPPPCLLDYFPKDFLVVVDESHQTIPQIGAMYRGDRSRKETLVEF 392

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L    I VSATP  +EL++ QG++VEQIIRPTGL DP VE
Sbjct: 393 GFRLPSALDNRPLRFEEFERLVHQGIYVSATPAEYELQKAQGVVVEQIIRPTGLTDPEVE 452

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   +QV+D+  E+   A+ G R+L+T LTKRMAEDLTEY  +  +R RY+HS+++TLE
Sbjct: 453 VRPVGSQVDDLLGEVRKRAEAGERVLVTTLTKRMAEDLTEYFTDVGVRCRYLHSDIETLE 512

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  +IRDLR G+FDVL+GINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 513 RSALIRDLRRGEFDVLIGINLLREGLDIPEVSLVAVLDADKEGFLRSEVSLIQTIGRAAR 572

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +VILYAD +T S++ A+DET RRRE Q  +N +H I PQ+VK  I ++   ++  D
Sbjct: 573 NVNGRVILYADAVTASMRRALDETDRRREIQRAYNLEHGITPQTVKRNITDLHMAVVEAD 632

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             T  ++ +        ++  A + +L ++M  AA  L FE+AA++RD I  LK
Sbjct: 633 YVTVPMAAE-DGAEYKPEQLPAIVAALEQEMKEAARALEFEKAAQLRDRILALK 685


>gi|197284504|ref|YP_002150376.1| excinuclease ABC subunit B [Proteus mirabilis HI4320]
 gi|238693135|sp|B4ESU7|UVRB_PROMH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|194681991|emb|CAR41446.1| excinuclease ABC subunit B [Proteus mirabilis HI4320]
          Length = 669

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/660 (56%), Positives = 475/660 (71%), Gaps = 6/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P GDQP AIA L +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHSEFKPGGDQPTAIASLCEGLEDGLAHQTLLGVTGSGKTFTIANVIANLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYSEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVVSSVS IYG+G  +SY +M++ L  G  ++Q+ +L  L   QY R 
Sbjct: 125 SATKALLERKDVIVVSSVSAIYGLGDPDSYLKMMLHLSNGMIIDQRAILRRLADLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A RV +F  ++E +S F PLTGQ   NV    +Y
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSLFDPLTGQIHYNVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK+EL  R   L    +L+E QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILDAMEKIKQELAERRKVLLANDKLVEEQRVTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    IVEQ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYELEKSGNDIVEQVVRPTGLLDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRIRAAKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N+  K ILY D IT S+  AI ET RRREKQ + N +H I P+ + +KI +++    P  
Sbjct: 545 NLEGKAILYGDKITDSMAKAIGETERRREKQQQFNLEHGIVPKGLNKKIGDILKIGQPTQ 604

Query: 738 LEDAATTNISIDAQQ--LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             +      ++D  +    LS  + +  ++ L  +M+  A +L FE+AA+ RD+++ L++
Sbjct: 605 GRNKKGHK-AVDTHEDYPLLSTAELEKEIQRLETEMYQHAKDLEFEKAAQTRDKLQTLRA 663


>gi|167838882|ref|ZP_02465659.1| excinuclease ABC subunit B [Burkholderia thailandensis MSMB43]
          Length = 696

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y PSGDQP AIA L++G+      Q LLGVTGSGKT+TMA  
Sbjct: 13  DESKFVTFDGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANT 72

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 73  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+
Sbjct: 133 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDRIGQREV 192

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG
Sbjct: 193 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDSLHLFDPLTG 252

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +
Sbjct: 253 RVRQKIPRFTVYPSSHYVTPRETVMRAVETIKDELRDRLEFFHRDGKLVEAQRLEQRTRF 312

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 313 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYN 372

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L +YGFRLPS +DNRPL+F E+       + VSATP  +E  +  G   EQ+
Sbjct: 373 GDRARKENLVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-RRVSGQTAEQV 431

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 432 VRPTGLVDPEIEVRPASTQVDDVLSEITERVKADERVLITVLTKRMAEQLTEFLADHGVK 491

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 492 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 551

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N++  I P+ V ++
Sbjct: 552 RSLIQTIGRAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEEMGITPRGVVKR 611

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 612 IKDIIDGVYNADEARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAA 670

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
           + RD++  L+   +   + D
Sbjct: 671 QTRDQLALLRERVFGANVGD 690


>gi|226330883|ref|ZP_03806401.1| hypothetical protein PROPEN_04804 [Proteus penneri ATCC 35198]
 gi|225201678|gb|EEG84032.1| hypothetical protein PROPEN_04804 [Proteus penneri ATCC 35198]
          Length = 669

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/665 (56%), Positives = 476/665 (71%), Gaps = 7/665 (1%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           SKD   F++ +++ P GDQPAAIA L +G+      Q LLGVTGSGKTFT+A VI  + R
Sbjct: 2   SKD---FKLHSEFKPGGDQPAAIASLCEGLDDGLAHQTLLGVTGSGKTFTIANVIANLNR 58

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+APNK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE 
Sbjct: 59  PTMVLAPNKTLAAQLYSEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEH 118

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT++LLER D IVVSSVS IYG+G  +SY +M++ L  G  ++Q+ +L  L  
Sbjct: 119 IEQMRLSATKALLERKDVIVVSSVSAIYGLGDPDSYLKMMLHLTNGMIIDQRAILRRLAD 178

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    RGTFRV G+ I+IFP+  +D A RV +F  ++E +S F PLTGQ   NV
Sbjct: 179 LQYTRNDQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSLFDPLTGQIHYNV 238

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               +Y  +HYVTPR  +  AM+ IK+EL  R   L    +L+E QR+ QR  +DLEM+ 
Sbjct: 239 PRFTVYPKTHYVTPRERILEAMEEIKKELADRRKVLLANNKLVEEQRVTQRTQFDLEMMN 298

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMY+GD  RK
Sbjct: 299 ELGYCSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYKGDRSRK 358

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I+EQ++RPTGL
Sbjct: 359 ETLVEYGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYELEKSGNEIIEQVVRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP VE+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL E   RVRY+HS
Sbjct: 419 LDPIVEVRPVATQVDDLLSEIRIRAAKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 479 DIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI- 733
           IGRAARN+  K ILY D IT S+  AI ET RRREKQ + N +H I P+ + +K+ +++ 
Sbjct: 539 IGRAARNLEGKAILYGDKITDSMAKAISETERRREKQQQFNLEHGIVPKGLNKKVGDILK 598

Query: 734 --DPILLEDAATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
              P    +      + I      LS  + +  ++ L  +M+  A +L FE+AA  RD++
Sbjct: 599 IGQPTQGRNKKGHKATDIHENYPLLSTAELEKEIQRLEAEMYQYAKDLEFEKAASTRDKL 658

Query: 791 KRLKS 795
           + L++
Sbjct: 659 QALRA 663


>gi|319786463|ref|YP_004145938.1| excinuclease ABC subunit B [Pseudoxanthomonas suwonensis 11-1]
 gi|317464975|gb|ADV26707.1| excinuclease ABC, B subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 675

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/667 (55%), Positives = 486/667 (72%), Gaps = 11/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L++G  +    Q+LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FELVSPYAPAGDQPYAIEKLVEGFDAGLAKQVLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+N+VEYFVSYYDYYQPEAYVP TDT+IEK+SSIN+ I++MR 
Sbjct: 65  HNKTLAAQLYGEFKAFFPNNSVEYFVSYYDYYQPEAYVPSTDTFIEKDSSINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++LL R D +VV++VS IYG+G+ E Y  + + L  G+ ++Q+ELL  L + QY R 
Sbjct: 125 AATKALLSRRDVLVVATVSAIYGLGAPEDYLSLRLILSRGERIDQRELLRHLTQLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RGTFRV G+ +++ P+  +  A R+ +F  ++E IS F PLTG+ +R V    IY
Sbjct: 185 EYELQRGTFRVRGEVVDVHPAESDAEAVRIELFDGEVENISLFDPLTGEVLRRVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R  + +A++ IK ELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRDRVLSAIETIKVELKERLEQLYAQNKLVEAQRLAQRTQFDLEMMAEVGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PG+PPPTLF+Y+P D+LL VDESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGQPPPTLFDYLPADALLVVDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW    P +I VSATPG +E  +    +VE ++RPTGLVDP VE
Sbjct: 365 GFRLPSALDNRPLKFEEWEERAPRSIYVSATPGPYEQREAGDQVVELVVRPTGLVDPQVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN    QG R+L+T LTKRMAE+LT+YL E +I+VRY+HS+V T+E
Sbjct: 425 IRPVGTQVDDLMGEINKCVAQGDRVLVTTLTKRMAENLTDYLAEHDIKVRYLHSDVDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSSGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  + ILYAD+IT+S+Q AI+ET RRREKQ ++N +H I P+ V  +IM+V++    E 
Sbjct: 545 NLRGRAILYADSITRSMQAAIEETNRRREKQEQYNAEHGIVPRQVVRQIMDVMEGARAEP 604

Query: 741 AATTNISID-----------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
             T                 A   +L   K  A ++ L ++M+  A +L FE+AAR+RDE
Sbjct: 605 GETKGKGKGRGKTRQVAEPAADYSTLDPAKAVAKIQELEQRMYQHARDLEFEDAARLRDE 664

Query: 790 IKRLKSS 796
           I++LK +
Sbjct: 665 IRKLKEA 671


>gi|254296830|ref|ZP_04964284.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 406e]
 gi|157806679|gb|EDO83849.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 406e]
          Length = 679

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/668 (54%), Positives = 485/668 (72%), Gaps = 6/668 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y PSGDQP AIA L++G+      Q LLGVTGSGKT+TMA  I  + RPAIV A
Sbjct: 8   FQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANTIARLGRPAIVFA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I++MR 
Sbjct: 68  PNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+++ L+  QY R 
Sbjct: 128 SATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREVIARLIAMQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG+  + +    +Y
Sbjct: 188 EQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTGRVRQKIPRFTVY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +DLEML+  G C+
Sbjct: 248 PSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRFDLEMLQELGFCK 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  L +Y
Sbjct: 308 GIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKENLVDY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+       + VSATP  +E ++  G   EQ++RPTGLVDP +E
Sbjct: 368 GFRLPSALDNRPLKFPEFERKMRQMVFVSATPADYE-QRVSGQTAEQVVRPTGLVDPQIE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++VRY+HS++ T+E
Sbjct: 427 VRPASTQVDDVLSEITERVKANERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDIDTVE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 487 RVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K +LYAD IT S++ AIDET RRR KQ+ +N+K  I P+ V ++I ++ID +   D
Sbjct: 547 NVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGVYNAD 606

Query: 741 AATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA+ RD++  L+  
Sbjct: 607 EARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAQTRDQLALLRER 665

Query: 797 PYFQGLDD 804
            +   + D
Sbjct: 666 VFGANVGD 673


>gi|253990411|ref|YP_003041767.1| excinuclease ABC subunit B [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781861|emb|CAQ85024.1| uvrabc system protein b (protein uvrb) (excinuclease abc subunit b)
           [Photorhabdus asymbiotica]
          Length = 673

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/658 (56%), Positives = 474/658 (72%), Gaps = 4/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI QL +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 9   FKLHSDFEPGGDQPEAICQLQEGLEDGLAHQTLLGVTGSGKTFTIANVIANLNRPTMVLA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSE K+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 69  PNKTLAAQLYSEMKDFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  +SY +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 129 SATKALLERRDVIVVASVSAIYGLGDPDSYLKMMLHLTNGMIIDQRSILRRLAELQYTRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F +++E +S F PLTGQ   NV    +Y
Sbjct: 189 DQVFQRGTFRVRGEVIDIFPAESDEHALRVELFDDEVERLSLFDPLTGQVQYNVPRYTVY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL+ R   L   G+LLE QR+ QR  +DLEM+   G C 
Sbjct: 249 PKTHYVTPRERIIQAMEQIKIELEQRRKVLLANGKLLEEQRITQRTQFDLEMMNELGYCS 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 309 GIENYSRYLSGRTEGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRSRKETLVEY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS +DNRPLRFEE+  L P TI VSATPG +ELE+  G +VEQ++RPTGL+DP VE
Sbjct: 369 GFRMPSALDNRPLRFEEFEALAPQTIYVSATPGKYELEKSGGDVVEQVVRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 429 VRPVTTQVDDLLSEIRIRAVKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 489 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N++ K ILY D IT S+  AI ET RRR KQ   N +  I P+ + +KI +++    P  
Sbjct: 549 NLHGKAILYGDKITDSMAKAIGETERRRTKQQIFNAERGIVPKGLNKKIGDILQIGQPAG 608

Query: 738 LEDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +           +  S LS K+ +  ++ L  +M+  A +L FE AA +RD+++ L+
Sbjct: 609 GKGKTKGKAVATTEAFSKLSAKELENKIRELEAKMYQHAQDLEFELAANVRDQVQILR 666


>gi|67640579|ref|ZP_00439380.1| excinuclease ABC, B subunit [Burkholderia mallei GB8 horse 4]
 gi|134283066|ref|ZP_01769768.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 305]
 gi|217424494|ref|ZP_03455992.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 576]
 gi|134245714|gb|EBA45806.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 305]
 gi|217392418|gb|EEC32442.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 576]
 gi|238521326|gb|EEP84778.1| excinuclease ABC, B subunit [Burkholderia mallei GB8 horse 4]
          Length = 679

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/668 (54%), Positives = 485/668 (72%), Gaps = 6/668 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y PSGDQP AIA L++G+      Q LLGVTGSGKT+TMA  I  + RPAIV A
Sbjct: 8   FQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANTIARLGRPAIVFA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I++MR 
Sbjct: 68  PNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+++ L+  QY R 
Sbjct: 128 SATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREVIARLIAMQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG+  + +    +Y
Sbjct: 188 EQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTGRVRQKIPRFTVY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +DLEML+  G C+
Sbjct: 248 PSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRFDLEMLQELGFCK 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  L +Y
Sbjct: 308 GIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKENLVDY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+       + VSATP  +E ++  G   EQ++RPTGLVDP +E
Sbjct: 368 GFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVSGQTAEQVVRPTGLVDPQIE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++VRY+HS++ T+E
Sbjct: 427 VRPASTQVDDVLSEITERVKANERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDIDTVE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 487 RVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K +LYAD IT S++ AIDET RRR KQ+ +N+K  I P+ V ++I ++ID +   D
Sbjct: 547 NVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGVYNAD 606

Query: 741 AATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA+ RD++  L+  
Sbjct: 607 EARAELK-EAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAQTRDQLALLRER 665

Query: 797 PYFQGLDD 804
            +   + D
Sbjct: 666 VFGANVGD 673


>gi|269139892|ref|YP_003296593.1| excinuclease ABC subunit B [Edwardsiella tarda EIB202]
 gi|267985553|gb|ACY85382.1| excinuclease ABC subunit B [Edwardsiella tarda EIB202]
 gi|304559728|gb|ADM42392.1| Excinuclease ABC subunit B [Edwardsiella tarda FL6-60]
          Length = 672

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/664 (56%), Positives = 477/664 (71%), Gaps = 13/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L  G+      Q LLGVTGSGKTFT+A VI  + RP +VMA
Sbjct: 5   FKLHSAFQPSGDQPEAIRRLEAGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKQFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRSILRRLSELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A RV +F +++E +S F PLTGQ +R V    +Y
Sbjct: 185 DQAFARGTFRVRGEVIDIFPAEADDEALRVELFDDEVERLSLFDPLTGQLLRTVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ I  EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIHAELATRRQSLLANNKLLEEQRLAQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+    +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGNYELEKSGDEVIDQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EIN  A  G R+L+T LTKRMAEDLTEYL E  +RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEINQRAAIGERVLVTTLTKRMAEDLTEYLEEHGVRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FD LVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDALVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD +T S+  AI ET RRRE+Q   N  H I PQ++ +K+ +++    L D
Sbjct: 545 NLNGKAILYADKMTPSMARAIGETERRRERQQAFNLAHGITPQALNKKVTDILQ---LGD 601

Query: 741 AATTNIS--IDAQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           A + + +     Q+ +        LS K+ +  ++ L  QM+  A NL FE+AA +RDEI
Sbjct: 602 APSRSRAKGTRGQRAAEPRTDYRDLSAKQIEQQIQRLETQMYQHAQNLEFEQAAALRDEI 661

Query: 791 KRLK 794
             L+
Sbjct: 662 HILR 665


>gi|261343466|ref|ZP_05971111.1| excinuclease ABC subunit B [Providencia rustigianii DSM 4541]
 gi|282568614|gb|EFB74149.1| excinuclease ABC subunit B [Providencia rustigianii DSM 4541]
          Length = 672

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/670 (55%), Positives = 481/670 (71%), Gaps = 14/670 (2%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           SKD   F++ +D+ P GDQP AI +L++G+      Q LLGVTGSGKTFT+A VI    R
Sbjct: 2   SKD---FKLYSDFQPGGDQPEAIRKLIEGLEDGLAHQTLLGVTGSGKTFTIANVIAQENR 58

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P ++MA NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE 
Sbjct: 59  PTMLMAHNKTLAAQLYSEMKGFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEH 118

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT++LLER D IVV+SVS IYG+G  +SY +M++ L  G  ++Q+ +L  L  
Sbjct: 119 IEQMRLSATKALLERRDVIVVASVSAIYGLGDPDSYLKMMLHLTDGMIIDQRSILRRLAD 178

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    RGTFRV G+ I+IFP+  ++ A RV +F +++E +S F PLTG     +
Sbjct: 179 LQYTRNDQAFTRGTFRVRGEVIDIFPAESDEYALRVELFDDEVERLSLFDPLTGAIQHRI 238

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               +Y  +HYVTPR  +  AM+ IK EL  R   L +  +L+E QR+ QR  +DLEM+ 
Sbjct: 239 PRFTVYPKTHYVTPRERILEAMEQIKIELADRRRVLLENNKLIEEQRVAQRTQFDLEMMN 298

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI  MY+GD  RK
Sbjct: 299 ELGYCSGIENYSRYLSGRAPGEPPPTLFDYLPADGLLVVDESHVTIPQIGAMYKGDRSRK 358

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL EYGFRLPS +DNRP+RFEE+    P TI VSATPG++ELE+    ++EQ++RPTGL
Sbjct: 359 ETLVEYGFRLPSALDNRPMRFEEFEAAAPQTIYVSATPGNYELEKSGHEVIEQVVRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+R   TQV+D+  EI L  ++  R+L+T LTKRMAEDLTEYL E   RVRY+HS
Sbjct: 419 LDPIIEVRPVTTQVDDLLSEIRLRVEKQERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 479 DIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN+N K ILY D IT S+  AI ET RRR KQ+E+N+ H I PQ +K+K+ +++ 
Sbjct: 539 IGRAARNLNGKAILYGDRITNSMAKAIAETERRRAKQIEYNEAHGITPQGLKKKVGDILQ 598

Query: 735 ---------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
                        + +   +++++ Q  S+S K+ +  +  L  QM+  A +L FE AAR
Sbjct: 599 IGHKVGGKGKGRGKGSNKEDLALNIQ--SMSTKELEQRISQLEAQMYKHAQDLEFEAAAR 656

Query: 786 IRDEIKRLKS 795
           +RDE++ L++
Sbjct: 657 VRDELQTLRN 666


>gi|212635179|ref|YP_002311704.1| excinuclease ABC subunit B [Shewanella piezotolerans WP3]
 gi|212556663|gb|ACJ29117.1| Excinuclease ABC, B subunit [Shewanella piezotolerans WP3]
          Length = 667

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/663 (54%), Positives = 478/663 (72%), Gaps = 12/663 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ Y P+GDQP AI QL+ G+ S    Q LLGVTGSGKTFT+A VIE M RP I+
Sbjct: 4   SVFQLESQYKPAGDQPTAINQLVDGLESGLASQTLLGVTGSGKTFTIANVIEKMARPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP T T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTGTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ G  ++Q+++L  L + QY 
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPKSYMKMLLHLREGAIMDQRDMLKRLSELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGT+RV G+ I++FP+  +  A RV +F ++IE +S F PLTG  ++ +  I 
Sbjct: 184 RNDIELQRGTYRVRGEVIDVFPADSDKHAIRVELFDDEIERLSLFDPLTGHIMKRIARIT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYVTPR ++  A ++IKEEL+ R  +L    +L+E QR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKSHYVTPRESILAATEHIKEELRERKKQLLDLNKLIEEQRITERVQYDVEMMTELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  G+ PPTL +Y+PED LL +DESHVT+PQI  MY+GD  RK  L 
Sbjct: 304 CSGIENYSRYLSGRASGDGPPTLLDYLPEDGLLIIDESHVTVPQIGAMYKGDRSRKMNLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P +I VSATP  +E+ + +G + EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEALMPQSIFVSATPSEYEINRSEGEVAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    QV+D+  EI        R+L+T LTKRM+EDL+EYL E  ++VRY+HS++ T
Sbjct: 424 IEVRPVGIQVDDLLSEIGKRVAVNERVLVTTLTKRMSEDLSEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVL+GINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGVFDVLIGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILY D ITKS+  AI ET RRRE Q ++N  + I P+ V ++I +V+D    
Sbjct: 544 ARNVNGKVILYGDRITKSMDKAITETNRRREMQHQYNLDNGITPKGVIKRITDVMDV--- 600

Query: 739 EDAATTNISIDAQQLSLSKKKGKA-------HLKSLRKQMHLAADNLNFEEAARIRDEIK 791
               + N+S +  +++ S     A        +  L KQMH  A NL FEEAA +RD + 
Sbjct: 601 --GDSDNVSSEFAKVAESDADYHAKPADISHEIDKLEKQMHEHAKNLEFEEAAALRDRVG 658

Query: 792 RLK 794
           RL+
Sbjct: 659 RLR 661


>gi|43284|emb|CAA27314.1| uvrB [Escherichia coli]
          Length = 673

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/664 (56%), Positives = 480/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+ S++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLRSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|296134221|ref|YP_003641468.1| excinuclease ABC, B subunit [Thermincola sp. JR]
 gi|296032799|gb|ADG83567.1| excinuclease ABC, B subunit [Thermincola potens JR]
          Length = 676

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/655 (55%), Positives = 478/655 (72%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI ++++GI++  + Q LLGVTGSGKTFTMA VI  + +P +V+A
Sbjct: 3   FKLVSEYKPKGDQPKAIREIVEGINAGLRHQTLLGVTGSGKTFTMANVIAQVNKPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SINE+ID++RH
Sbjct: 63  HNKTLAAQLCSEFKEFFPENAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINEEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y  ++V ++ G ++++  LL  LV  QY+R 
Sbjct: 123 SATAALFERRDVIIVASVSCIYGLGSPEDYKNLVVSIRRGSAMDRDRLLRRLVDIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  IRG FRV GD +EIFP+   + A R+  FG++I+ I E   LTG+ +     I IY
Sbjct: 183 DINFIRGKFRVRGDVVEIFPASYTERAVRIEFFGDEIDRIVEIDTLTGEILGERNHISIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T +  L  A++ I+ EL+ RL EL  +G+LLEAQRLEQR  +D+EM+   G C 
Sbjct: 243 PASHFATSQENLERAIRDIEAELEQRLNELRSQGKLLEAQRLEQRTNFDIEMMREMGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++TGR PGEPP TL +Y P+D L+ +DESHVT+PQI GMY GD  RK+ L E+
Sbjct: 303 GIENYSRHITGRAPGEPPYTLLDYFPDDFLMIIDESHVTVPQIGGMYEGDRSRKSALIEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F E+       + VSATPG +E E     +VEQIIRPTGLVDP ++
Sbjct: 363 GFRLPSAYDNRPLTFGEFEKHINQVVYVSATPGPYEQEHS-ARVVEQIIRPTGLVDPEIQ 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI+   ++  R+L+T LTK+MAEDLT+YL E  I+VRY+HS++KTLE
Sbjct: 422 VRPTKGQIDDLLTEIHARLEKNERVLITTLTKKMAEDLTDYLKEVGIKVRYLHSDIKTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS+ SLIQTIGRAAR
Sbjct: 482 RMEILRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  KVI+YADTIT+S++ AIDET RRR+ Q+++NK HNI PQ+VK+ + +VI+  +   
Sbjct: 542 NVEGKVIMYADTITQSMKKAIDETNRRRKIQMDYNKAHNITPQTVKKAVRDVIEATIKVA 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T           +SKK  +  +  + K+M  AA  L FE+AA +RD +  L+ 
Sbjct: 602 EPTEKYVAGRNTAKMSKKDLRKLITQIEKEMQTAARRLEFEKAAELRDLLIELRG 656


>gi|257064686|ref|YP_003144358.1| Excinuclease ABC subunit B [Slackia heliotrinireducens DSM 20476]
 gi|256792339|gb|ACV23009.1| Excinuclease ABC subunit B [Slackia heliotrinireducens DSM 20476]
          Length = 698

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/657 (55%), Positives = 489/657 (74%), Gaps = 4/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y PSGDQP AI +L +GI S  + Q LLGVTGSGKTFTMAK IEA+QRP +VMA
Sbjct: 6   FKVVAPYEPSGDQPQAIEKLAEGIESGLRYQTLLGVTGSGKTFTMAKTIEAIQRPTLVMA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E K FFP+NAV YFVSYYDYYQPEAYVP+TDT+IEK++SINE+++++RH
Sbjct: 66  PNKTLAAQLAAELKEFFPNNAVVYFVSYYDYYQPEAYVPQTDTFIEKDASINEEVEKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT SLL R D IVV+SVSCIYGIGS   Y+ M V +      ++ +++  L+  QY R 
Sbjct: 126 AATSSLLSRRDIIVVASVSCIYGIGSPMDYAGMAVFVDKEVPQDRDDVIYKLIDIQYDRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGTFRV GD++++FP +  D   R+  +G++IE ISE   +TG+ + + E + I+
Sbjct: 186 DYELKRGTFRVRGDALDVFPPYA-DNPVRIEFWGDEIERISEIDNVTGEVLGSYEALPIW 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT RP ++ A+  I++EL+ RL + + EG+LLEAQRLE R+ YDLEMLET G C 
Sbjct: 245 PASHYVTARPKMDKALNTIQDELRERLQQFKDEGKLLEAQRLEMRVNYDLEMLETMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR PGEPP TL +Y P+D +  +DESHVT+PQI GM+ GD  RK TLAE+
Sbjct: 305 GIENYSRHLDGREPGEPPYTLIDYFPDDFVCIIDESHVTVPQIRGMHEGDRSRKVTLAEH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPLRF+E+    P  I VSATPG +E E+     VEQIIRPTGL+DP +E
Sbjct: 365 GFRLPSCLDNRPLRFDEFEDRIPQFIYVSATPGDYE-EKVTQQQVEQIIRPTGLLDPEIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   +Q++DV DE     ++  R+L+T LTK+MAEDLT++L +R I+ RYMHS++ TLE
Sbjct: 424 VRPIASQIDDVIDEAKERGERNERVLITTLTKKMAEDLTDHLLDRGIKARYMHSDIGTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR+  SLIQTIGRAAR
Sbjct: 484 RVEILRDLRKGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNHRSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ KVI+YAD +T S+ LAI ET RRR  Q+++N++H I PQ++++ I +V+  I   D
Sbjct: 544 NVSGKVIMYADKLTDSMNLAITETRRRRAVQMQYNEEHGIEPQTIRKAINDVMGFITDAD 603

Query: 741 AATTNISIDAQQL--SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                 S++  ++   +S+ +    + S+ ++M  A+ N++FEEAAR+RD++ +L++
Sbjct: 604 GNEVGDSVEVNKVLAEMSRAEVMRVISSMEEEMAAASVNMDFEEAARLRDQVVKLRA 660


>gi|311280344|ref|YP_003942575.1| excinuclease ABC, B subunit [Enterobacter cloacae SCF1]
 gi|308749539|gb|ADO49291.1| excinuclease ABC, B subunit [Enterobacter cloacae SCF1]
          Length = 673

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/664 (56%), Positives = 480/664 (72%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FTLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVINNLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ + +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHMTVGMIIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTG     ++   IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGHVESTIQRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKEELVDRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GM+RGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMFRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI L A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVSTQVDDLLSEIRLRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L E 
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQSQYNEEHGIVPQGLNKKVVDIL--ALGEG 602

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T              +A + +L+ K  +  +  L  QM   A NL FEEAA+IRD++
Sbjct: 603 LAKTRGKGRGKSRTAAQTEAVEKALTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|254247696|ref|ZP_04941017.1| Excinuclease ABC, B subunit [Burkholderia cenocepacia PC184]
 gi|124872472|gb|EAY64188.1| Excinuclease ABC, B subunit [Burkholderia cenocepacia PC184]
          Length = 707

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  
Sbjct: 24  DESKFVTFEGSPFQLYQPYPPAGDQPTAIDTLVEGVGDGLAFQTLLGVTGSGKTFTMANT 83

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 84  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 143

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 144 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRAGDKLGQRDV 203

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 204 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 263

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +
Sbjct: 264 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRF 323

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PG+PPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 324 DLEMLQELGFCKGIENYSRHFSGAAPGDPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 383

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ+
Sbjct: 384 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQV 442

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A +QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 443 VRPTGLVDPEIEVRPASSQVDDVLTEINARVKAGERVLITVLTKRMAEQLTEFLADHGVK 502

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 503 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 562

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRA RNVN K ILYAD +T+S++ AI ET RRR KQ+ +N+K  I P+ V ++
Sbjct: 563 RSLIQTIGRAGRNVNGKAILYADNMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKR 622

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D A   +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 623 IKDIIDGVYNADDARAELK-EAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAA 681

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
             RD++  L+   +   + D
Sbjct: 682 ATRDQLAVLRERVFGANVGD 701


>gi|77458102|ref|YP_347607.1| excinuclease ABC subunit B [Pseudomonas fluorescens Pf0-1]
 gi|90111048|sp|Q3KF38|UVRB_PSEPF RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|77382105|gb|ABA73618.1| excinuclease ABC subunit B [Pseudomonas fluorescens Pf0-1]
          Length = 671

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/665 (54%), Positives = 484/665 (72%), Gaps = 14/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI  +++GI +    Q LLGVTGSGKTF++A VI  +QRP +V+A
Sbjct: 4   FQLVTRFDPAGDQPEAIRLMVEGIEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ L+  L   QY R 
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALVRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+I+P+  +  A R+ +F +++E IS F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESISAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A++ IK EL+ RL  L    +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLLDAIEGIKVELQERLEYLRNNNKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G  PPTL++Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPAGAAPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G ++EQ++RPTGLVDP VE
Sbjct: 364 GFRLPSALDNRPMRFDEWEGVSPQTIFVSATPGNYEAEHA-GRVIEQVVRPTGLVDPQVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI        R+L+T LTKRMAEDLT+YL +  +RVRY+HS++ T+E
Sbjct: 423 VRPALTQVDDLLSEITKRVAVEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           N+N + ILYAD IT S++ AI ET RRR+KQ+  N  + I P+ V + + ++++      
Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVFKDVADIMEGATVPG 602

Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                   +  AA  N   +A+  S S+   +  ++ L ++M+  A +L FE AA++RDE
Sbjct: 603 SRSKKRKGMAKAAEENAKYEAELRSPSEITKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660

Query: 790 IKRLK 794
           I +L+
Sbjct: 661 IAKLR 665


>gi|269836827|ref|YP_003319055.1| excinuclease ABC, B subunit [Sphaerobacter thermophilus DSM 20745]
 gi|269786090|gb|ACZ38233.1| excinuclease ABC, B subunit [Sphaerobacter thermophilus DSM 20745]
          Length = 664

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/657 (56%), Positives = 491/657 (74%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ TD  P+GDQP AIAQL++G+      Q LLGVTGSGKTFTMA VI+A+QRP +V+A
Sbjct: 4   FQLVTDLRPTGDQPKAIAQLVEGLQRGYDQQTLLGVTGSGKTFTMANVIQAVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK++ IN++ID++RH
Sbjct: 64  PNKTLAAQLYSEFKEFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKDADINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATR+LL R D I+V+SVSCIYGIGS E Y + IV L+ G +V + ++L  LV+ QY+R 
Sbjct: 124 AATRALLTRRDVIIVASVSCIYGIGSPEEYGKTIVSLRRGATVRRDKVLRHLVELQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ ++RGTFRV GD+++IFP++ E++A R+  +G++IE I +  PLTG+ +     I IY
Sbjct: 184 DLTLMRGTFRVRGDTLDIFPAY-EEIAVRIEFWGDEIERIVDIDPLTGEILAERNEIDIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT +  L  A+K I+EEL+  L  LE EG++LEA RL+QR  YDLEML+  G C 
Sbjct: 243 PAKHFVTSQEKLQRAIKSIQEELEEWLKHLEAEGKILEAARLKQRTLYDLEMLQEAGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GEPP TL +Y P+D L+F+DESH++IPQ+ GMY GD  RK  L E+
Sbjct: 303 GIENYSRHLSGRKEGEPPWTLLDYFPDDYLMFIDESHMSIPQVRGMYGGDRSRKDILVEF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F+E+       I VSATPG +EL+  +  +VEQ+IRPTGL+DP + 
Sbjct: 363 GFRLPSARDNRPLTFDEFMQHINQVIYVSATPGEFELQNSKQ-VVEQVIRPTGLLDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+ DEI+    +G R L+T LTK+MAEDL +YL E  IR  Y+HSE+ TLE
Sbjct: 422 VRPTKGQIDDLIDEIHRRVARGERALVTTLTKKMAEDLADYLKEIGIRTHYLHSEIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS++SLIQTIGRAAR
Sbjct: 482 RIEILRDLRLGVYDVVVGINLLREGLDLPEVSLVAILDADKEGYLRSESSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738
           +V+ KVI+YADTIT+S++ AI+ET RRR  Q+ +N++H I P+ + +++ ++ D +  + 
Sbjct: 542 HVDGKVIMYADTITRSMEAAINETYRRRAIQIAYNEEHGIEPRGIVKEVRDLTDRVRAVA 601

Query: 739 EDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+A+       A  ++ L   +    +K L +QM  AA  L FE+AA +RD+I  L+
Sbjct: 602 EEASPYRAESKAGAIAELPPDELVRMIKDLERQMKEAAKMLEFEKAALLRDQIIELR 658


>gi|70729426|ref|YP_259164.1| excinuclease ABC subunit B [Pseudomonas fluorescens Pf-5]
 gi|90111046|sp|Q4KF19|UVRB_PSEF5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|68343725|gb|AAY91331.1| UvrABC system, B protein [Pseudomonas fluorescens Pf-5]
          Length = 671

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/665 (55%), Positives = 482/665 (72%), Gaps = 14/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI  +++GI +    Q LLGVTGSGKTF++A VI  +QRP +V+A
Sbjct: 4   FQLVTRFQPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+I+P+  +  A R+ +F +++E IS F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESISAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A++ IK EL+ RL  L    +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLLDAIEGIKVELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G  PPTL++Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPAGAAPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G +VEQ++RPTGLVDP VE
Sbjct: 364 GFRLPSALDNRPMRFDEWEGVSPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDPQVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI        R+L+T LTKRMAEDLT+YL +  +RVRY+HS++ T+E
Sbjct: 423 VRPALTQVDDLLSEITKRVAVEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           N+N + ILYAD IT S++ AI ET RRR+KQ+  N  + I P+ V + + ++++      
Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVVKDVADIMEGATVPG 602

Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                   +  AA  N   + +  S S+   +  ++ L ++M+  A +L FE AA++RDE
Sbjct: 603 SRSKKRKGMAKAAEENARYENELRSPSEITKR--IRQLEEKMYQLARDLEFEAAAQMRDE 660

Query: 790 IKRLK 794
           I +L+
Sbjct: 661 ITKLR 665


>gi|258517051|ref|YP_003193273.1| excinuclease ABC subunit B [Desulfotomaculum acetoxidans DSM 771]
 gi|257780756|gb|ACV64650.1| excinuclease ABC, B subunit [Desulfotomaculum acetoxidans DSM 771]
          Length = 674

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/655 (55%), Positives = 484/655 (73%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++++++ P GDQP AIAQL+ G+  +   Q+LLGVTGSGKT+TMAKVIE +QRPA+++A
Sbjct: 3   LKIRSEFTPRGDQPQAIAQLVDGLGKKYDKQILLGVTGSGKTYTMAKVIEEVQRPALILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL SEFK FFP+NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID++RH
Sbjct: 63  PNKTLAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYIAHTDTYIEKDSSLNDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D ++V+SVSCIYG+G  E YS +++ L+ G   ++  +L  LV  QY+R 
Sbjct: 123 SATCALFERRDVVIVASVSCIYGLGDPEEYSTLVLSLRQGVEYDRDAILRKLVDIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD IEIFP    + A RV MFG+++E++ +F  LTG+     + I ++
Sbjct: 183 DINFTRGTFRVRGDVIEIFPVAATEQAIRVEMFGDEVEKLLQFDVLTGEITGQRQHISVF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T +  +  A+  I+ EL+ RL EL K+ +LLEAQRLEQR  YD+EM+   G C 
Sbjct: 243 PASHYATSKEKMEEAISRIESELEQRLAELRKQDKLLEAQRLEQRTNYDIEMMREMGFCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR  G+PP TL +Y P+D ++F+DESHV +PQI GMY GD  RKA+L E+
Sbjct: 303 GIENYSRHLTGREAGQPPYTLLDYFPDDFIMFIDESHVAVPQIGGMYEGDRSRKASLIEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+       I VSATPG++EL+  +  IVEQ+IRPTGLVDP + 
Sbjct: 363 GFRLPSALDNRPLQFNEFEERVKQVIYVSATPGAYELKHHRQ-IVEQVIRPTGLVDPEII 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  R Q++D+  EI L  ++  R+L+T LTK+MAEDLT+Y  E  ++VRY+HS++ TLE
Sbjct: 422 IRPTRGQIDDLLMEIRLREKRDERVLITTLTKKMAEDLTDYFKENGVKVRYLHSDINTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT GRAAR
Sbjct: 482 RMEILRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTTGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           NV  KVI+YAD IT+S+  AI+ET RRR+KQL+ N+K+NI PQ+V++ + +V++   + E
Sbjct: 542 NVEGKVIMYADRITESMSKAINETERRRKKQLDFNEKYNITPQTVRKAVRDVLEATKVAE 601

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 +S  A+   +SKK     +  + K+M  AA  L FE+AAR+RD I  L+
Sbjct: 602 SKVPYAVSGKAK---MSKKDLIKMIAGMEKEMKEAARQLEFEQAARLRDTIIELR 653


>gi|107028610|ref|YP_625705.1| excinuclease ABC subunit B [Burkholderia cenocepacia AU 1054]
 gi|116690231|ref|YP_835854.1| excinuclease ABC subunit B [Burkholderia cenocepacia HI2424]
 gi|105897774|gb|ABF80732.1| Excinuclease ABC subunit B [Burkholderia cenocepacia AU 1054]
 gi|116648320|gb|ABK08961.1| Excinuclease ABC subunit B [Burkholderia cenocepacia HI2424]
          Length = 707

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/680 (54%), Positives = 490/680 (72%), Gaps = 10/680 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  
Sbjct: 24  DESKFVTFEGSPFQLYQPYPPAGDQPTAIDTLVEGVGDGLAFQTLLGVTGSGKTFTMANT 83

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 84  IARLGRPAIVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 143

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 144 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRAGDKLGQRDV 203

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 204 IARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 263

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +
Sbjct: 264 RVRQKIPRFTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRF 323

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PG+PPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 324 DLEMLQELGFCKGIENYSRHFSGAAPGDPPPTLVDYLPPDALMLLDESHVLIGQLNGMYN 383

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ+
Sbjct: 384 GDRARKENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQV 442

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R A +QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 443 VRPTGLVDPEIEVRPASSQVDDVLTEINARVKAGERVLITVLTKRMAEQLTEFLADHGVK 502

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 503 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 562

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYAD +T+S++ AI ET RRR KQ+ +N+K  I P+ V ++
Sbjct: 563 RSLIQTIGRAARNVNGKAILYADNMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKR 622

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           I ++ID +   D     +  +AQQ +    +S+K+    +K L KQM   A NL FE+AA
Sbjct: 623 IKDIIDGVYNADDVRAELK-EAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAA 681

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
             RD++  L+   +   + D
Sbjct: 682 ATRDQLAVLRERVFGANVGD 701


>gi|253698788|ref|YP_003019977.1| excinuclease ABC subunit B [Geobacter sp. M21]
 gi|251773638|gb|ACT16219.1| excinuclease ABC, B subunit [Geobacter sp. M21]
          Length = 662

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/654 (55%), Positives = 476/654 (72%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ T + P GDQP AIA+L  G+   +  Q+LLGVTGSGKTFTMA+VI     P +V+A
Sbjct: 4   FELVTSFEPRGDQPRAIAELADGVLRGDPHQVLLGVTGSGKTFTMAQVIARCNCPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK  FP+NAVEYFVSYYDYYQPEAY+P +DT+IEK+SSIN++ID+ RH
Sbjct: 64  PNKTLAAQLYGEFKELFPNNAVEYFVSYYDYYQPEAYLPSSDTFIEKDSSINDEIDKFRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL R D I+V+SVSCIYGIGS ESY +M ++ + GD V + E+L  LV  QY+R 
Sbjct: 124 SATRSLLTRRDVIIVASVSCIYGIGSPESYQEMQIRFREGDEVGRDEMLQRLVAIQYQRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++E+FP+H ++ A R+  FG+ ++ ISE  PL G +++ +    IY
Sbjct: 184 DVDFHRGSFRVRGDTVEVFPAHDDERALRIEFFGDTVDAISEIDPLRGVQLQKLSRCAIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  R TL  A++ I+ EL+ R+     +  LLEAQR+EQR  +D+EM+E  G CQ
Sbjct: 244 PASHYVASRQTLERAVELIRLELEERIRYFNAQNMLLEAQRIEQRTFFDIEMMEEMGFCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GR  GEPP TL +Y P+D LL +DESH+T+ Q+ GMYRGD  RK TL  Y
Sbjct: 304 GIENYSRHFDGRAAGEPPYTLIDYFPKDFLLVIDESHITVSQVGGMYRGDRSRKETLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+      TI VSATP  +EL+Q  G++VEQ+IRPTGL+DP +E
Sbjct: 364 GFRLPSALDNRPLTFQEFQKKLHQTIYVSATPADYELKQAGGVVVEQLIRPTGLIDPAIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D+  E    A +G R+L+T LTKRMAE+LT+Y  E  IRVRY+HS++ T +
Sbjct: 424 VRPAAGQVDDLLHEARETAARGERVLVTTLTKRMAEELTDYYRELGIRVRYLHSDIDTFQ 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG+FD+LVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQT GRAAR
Sbjct: 484 RMEILRDLRLGEFDLLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTCGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ +V++YAD +T S+Q AIDET RRR  Q  +N++H I P+SV+  I  V+     +D
Sbjct: 544 NLSGRVLMYADKVTGSMQAAIDETVRRRALQTAYNEEHGITPESVRRIIGNVLQAPEEKD 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             T   S  A++  +S K+ +  LK LRK+M  AA    FE AA +RD+IKRL+
Sbjct: 604 WVTVPAS--AEEF-VSAKELEKTLKRLRKEMLAAAKAQEFERAAELRDKIKRLE 654


>gi|251772139|gb|EES52709.1| excinuclease ABC, B subunit [Leptospirillum ferrodiazotrophum]
          Length = 698

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/663 (55%), Positives = 479/663 (72%), Gaps = 3/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQ  AI +L +G+ +RE+ Q LLGVTGSGKTFT+A VI    +PA+V+A
Sbjct: 13  FRLVSDYAPCGDQGKAIDRLTRGVSNRERFQTLLGVTGSGKTFTVANVIANAGKPALVLA 72

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EF+ FFP N VEYFVSYYDYYQPEAY+P TDTYIEK+S+IN+ IDRMRH
Sbjct: 73  PNKTLAAQLYREFREFFPDNRVEYFVSYYDYYQPEAYLPATDTYIEKDSAINDLIDRMRH 132

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D IVV+SVSCIYG+GS +SY +M + L+ G  + ++ LL  LV+ QY+R 
Sbjct: 133 SATTALLERLDTIVVASVSCIYGLGSPDSYLKMHLYLEQGMEIRRQRLLERLVEIQYERN 192

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I   RGTFRV GD ++IFPS  E+ A RV  +G+ +E I E  PLTG+++  V +I IY
Sbjct: 193 EIDFHRGTFRVKGDVVDIFPSSYEERALRVEFWGDTVERIREIDPLTGKELLQVPSIIIY 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV P   L  A+  I+EEL  R+    K  +L+EAQR+EQR  +DLEM+   G C 
Sbjct: 253 PATHYVLPPDKLEGALAAIEEELAERIDYFRKNNKLVEAQRIEQRTLFDLEMIREVGFCH 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y P D LL +DESHV +PQ+ GMY+GD  RK +L ++
Sbjct: 313 GIENYSRHLSGRAPGEPPPTLFDYFPPDYLLVIDESHVAVPQVGGMYQGDHSRKKSLVDF 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL  EE+  +    I VSATPG +EL   +G+ VEQ+IRPTGLVDP VE
Sbjct: 373 GFRLPSAFDNRPLTAEEFEQVMKQVIFVSATPGPYELAASKGVTVEQVIRPTGLVDPEVE 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +  A  QV+ +  E+     QG R+L+T LTKRMAE+LTEYL ER +RVRY+HSE+ T+E
Sbjct: 433 VVPAVHQVDHLLGEVRKTVAQGDRVLVTTLTKRMAENLTEYLEERGVRVRYLHSEIDTIE 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT GRAAR
Sbjct: 493 RMEIIRDLRRGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSRRSLIQTSGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  +VI YAD++T S++ AIDE  RRR  QL +NK++ I PQS+++ I E +  +   D
Sbjct: 553 NLRGRVIFYADSVTGSMKEAIDEMNRRRSIQLAYNKENGIVPQSIRKNIPEALYHVSESD 612

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
             T  ++ + ++  ++   G A    +R +M  AA+ L+FE+AA  RD ++     P  +
Sbjct: 613 YVTVEMASEEREEVVAHSLGDAE---IRARMVEAAEALDFEKAAYFRDLLRARGERPSGE 669

Query: 801 GLD 803
           G+D
Sbjct: 670 GID 672


>gi|253996555|ref|YP_003048619.1| excinuclease ABC subunit B [Methylotenera mobilis JLW8]
 gi|253983234|gb|ACT48092.1| excinuclease ABC, B subunit [Methylotenera mobilis JLW8]
          Length = 677

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/661 (54%), Positives = 475/661 (71%), Gaps = 4/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +Q+   + P+GDQP AI +L +G++   K Q LLGVTGSGKTFTMA VI    +PAIVMA
Sbjct: 10  YQLHQPFPPAGDQPQAIEKLTQGVNDGLKFQTLLGVTGSGKTFTMANVIARTGKPAIVMA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP+N+VEYFVSYYDYYQPEAYVP  D +IEK+SSIN+ I++MR 
Sbjct: 70  PNKTLAAQLYSEFREFFPNNSVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINDHIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER DC+VV++VS IYGIG    Y  M++ + +G  + Q++++  L++ QY R 
Sbjct: 130 SATKAMLEREDCVVVATVSAIYGIGDPSEYHGMVLHIHLGQKIGQRDIVDHLIRMQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD I++FPS   + A R+S+F ++I+ I  F PLTGQ    +   +I+
Sbjct: 190 DFDFDRGAFRVRGDVIDVFPSENSETAVRISLFDDEIDGIQLFDPLTGQIFNKIHNFRIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVT R     AM+ IKEEL+ R+    KE +L+EAQR+EQR  +DLEML   G C+
Sbjct: 250 PSSHYVTAREATIRAMETIKEELRDRVNFYIKENKLVEAQRVEQRTRFDLEMLNEIGFCK 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PG+PPPTL +Y+P+ +LL +DESHVT+PQI  MY+GD  RK  L +Y
Sbjct: 310 GIENYSRHLTGAKPGDPPPTLMDYLPDSALLIIDESHVTVPQIGAMYKGDRARKENLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+FEE+  +    + VSATP  +E E  Q  +VE I RPTGL+DP + 
Sbjct: 370 GFRLPSAMDNRPLKFEEFERVMRQCVFVSATPADYEKEHQQQ-VVEMIARPTGLMDPEII 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ A TQV+D+  EI    + G R+L T LTKRM+EDLT+YL E  ++ RY+HS++ T+E
Sbjct: 429 VKPADTQVDDLLSEIKKRVELGERVLATTLTKRMSEDLTDYLSEHGVKTRYLHSDIDTVE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQT GRAAR
Sbjct: 489 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTAGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N +VI YA+ IT+S+QLA+DET RRR  Q   N+ H I P+ V ++I ++ID +  +D
Sbjct: 549 NLNGQVIFYANRITRSMQLAMDETERRRGVQKAFNEAHGITPRGVSKRIKDIIDGVYDKD 608

Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            A         Q S   LS+K+    +K L K MH AA NL FE+AA  RD++K+L+   
Sbjct: 609 EAVRERKAMQDQASYEALSEKQITKEMKRLEKAMHDAAKNLEFEKAADFRDQLKKLRVKF 668

Query: 798 Y 798
           Y
Sbjct: 669 Y 669


>gi|78043646|ref|YP_359130.1| excinuclease ABC subunit B [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|90110878|sp|Q3AFF4|UVRB_CARHZ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|77995761|gb|ABB14660.1| excinuclease ABC, B subunit [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 662

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/655 (56%), Positives = 481/655 (73%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++ +Y P GDQP AI +L +GI    K+Q LLGVTGSGKTFTMA VI  + +P +V+A
Sbjct: 4   FLLKANYTPKGDQPKAIKELTEGIEKGLKMQTLLGVTGSGKTFTMANVIANVNKPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+ FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++ID++RH
Sbjct: 64  PNKTLAAQLCAEFREFFPENAVEYFVSYYDYYQPEAYLPATDTYIEKDSAINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G  + Y ++++ ++ G   E++ +L  LV  QY+R 
Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPQEYRELLLSVRKGQIYEREAILRKLVDIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV GD IE+FP+   D A R+ +FG++++ I EF  LTG+ I  ++ + I+
Sbjct: 184 EYDLTRGKFRVRGDVIEVFPASYTDRAVRIELFGDEVDRILEFDTLTGEIIGELKHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T +  L  A+K I+EEL+ RL   E+ G+LLEAQRL+QR  YD+EML   G  +
Sbjct: 244 PASHFATSKEKLERAIKSIEEELEERLRYFEERGKLLEAQRLKQRTLYDIEMLREVGYTK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGEPP TL +Y P+D L+ +DESH+TIPQI GMY GD  RK  L EY
Sbjct: 304 GIENYSRHLTGRKPGEPPYTLIDYFPKDFLMIIDESHITIPQIRGMYEGDRSRKEALVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+       + VSATPG +EL+  Q  IVEQIIRPTGLVDP VE
Sbjct: 364 GFRLPSAFDNRPLKFHEFEARINQVVFVSATPGPYELKHSQK-IVEQIIRPTGLVDPEVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R QV+D+Y EI     +  R+L+T LTK+MAEDLTEY  E  ++VRY+HS++ TLE
Sbjct: 423 VRPTRGQVDDLYGEIKERVARNERVLVTTLTKKMAEDLTEYFREMGVKVRYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS+ SLIQTIGRAAR
Sbjct: 483 RVEILRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN KVI+YADT+T S+Q AIDET RRR+ Q+E+N+KH I PQ+V++ + +VI+      
Sbjct: 543 NVNGKVIMYADTVTASMQKAIDETNRRRKLQMEYNRKHGITPQTVQKAVRDVIEATRAVT 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A    +  D  Q  +S K+ K +++ L ++M  AA  L FE+AA +RD I  L++
Sbjct: 603 AELPEVKRDFIQ-KMSAKEFKQYVEKLTREMKEAAKALEFEKAAMLRDLIIELRA 656


>gi|261822206|ref|YP_003260312.1| excinuclease ABC subunit B [Pectobacterium wasabiae WPP163]
 gi|261606219|gb|ACX88705.1| excinuclease ABC, B subunit [Pectobacterium wasabiae WPP163]
          Length = 670

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/663 (55%), Positives = 475/663 (71%), Gaps = 11/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +++A
Sbjct: 5   FTLHSDFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMMLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTG  ++ V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHVLQTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +L+E QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEDIKVELADRKKVLLANDKLVEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+  G I++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEIIDQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI L A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRLRAVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILY D IT S+  AI ET RRREKQ  +N +H I PQ + +KI +++    L  
Sbjct: 545 NLRGKAILYGDRITASMAKAISETERRREKQEAYNTEHGIVPQGINKKISDILQ---LGQ 601

Query: 741 AATTNISIDAQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           +A+       ++ +        ++ K  +  ++ L  +M   A NL FEEAA +RDE++ 
Sbjct: 602 SASKGKGRGNRKAAEPAARYELMTPKALELKIRELESKMLTHAQNLEFEEAAALRDEVQA 661

Query: 793 LKS 795
           L++
Sbjct: 662 LRA 664


>gi|297569470|ref|YP_003690814.1| excinuclease ABC, B subunit [Desulfurivibrio alkaliphilus AHT2]
 gi|296925385|gb|ADH86195.1| excinuclease ABC, B subunit [Desulfurivibrio alkaliphilus AHT2]
          Length = 670

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/658 (56%), Positives = 466/658 (70%), Gaps = 4/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T++ P+GDQP AI  L +G++     Q+LLGVTGSGKTFTMA+VI    RPA+++A
Sbjct: 7   FALITEFTPAGDQPRAIELLSRGVNQGATHQVLLGVTGSGKTFTMAQVIAETGRPALILA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEFK  FPHNAVEYFVSYYDYYQPEAY+P++DTYIEK+S+IN+ ID+MRH
Sbjct: 67  PNKTLAAQLYSEFKELFPHNAVEYFVSYYDYYQPEAYIPQSDTYIEKDSAINDTIDKMRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            ATR+LL R D I+V+SVSCIYG+GS E Y  M + LK+G+     E+   LV   Y+R 
Sbjct: 127 GATRALLTRRDVIIVASVSCIYGLGSPEEYLNMHLALKVGEDYPPVEIQRRLVHMLYERN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD IEIFP H E+ A RV +FG+ IE I    PL G      +   ++
Sbjct: 187 DYSFHRGTFRVRGDVIEIFPVHEEEQALRVELFGDTIEAIRVVDPLRGVVHAEQDEATVF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT R     A+K IK ELK RL ELE  GRLLEAQRLEQR  +DLEML   G C 
Sbjct: 247 PGSHFVTSRERQQQAVKTIKAELKERLRELESAGRLLEAQRLEQRTNFDLEMLAELGYCH 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TGR PG PPPTL +Y P+D LL VDESHV+IPQ+ GMYRGD  RK TL EY
Sbjct: 307 GIENYSRHFTGRPPGAPPPTLLDYFPDDYLLLVDESHVSIPQVRGMYRGDRSRKETLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELE  QG +VEQIIRPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPLMFDEFAARTNQAIYVSATPGDYELEMAQGRVVEQIIRPTGLMDPAIE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D+  EI   A++   +L+T LTKRMAEDL EY     +RVRY+H+++KTLE
Sbjct: 427 VRPASGQVDDLLAEIRHRAERNEAVLVTTLTKRMAEDLCEYYANLGVRVRYLHADIKTLE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++RDLR  ++DVLVGINLLREGLD+PE  LVA+LDADKEGFLRS+ SLIQT GRAAR
Sbjct: 487 RMELLRDLRRREYDVLVGINLLREGLDLPEVSLVAVLDADKEGFLRSERSLIQTCGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VILY D +++++   I ET RRR  Q E+N++H I P +++ +I +++  I  +D
Sbjct: 547 NADGLVILYGDQLSEAMARTIAETNRRRAIQAEYNREHGITPATIRSRIKDIMASIYEQD 606

Query: 741 AATTNISIDA----QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            AT  +   A    Q +  S+ + +  ++ L K M  AA  L FE+AA +RD IK LK
Sbjct: 607 YATVEVPEQAVAEEQPVFRSRDELRKEIRQLEKAMQEAARELAFEDAAELRDRIKVLK 664


>gi|254447168|ref|ZP_05060635.1| excinuclease ABC, B subunit [gamma proteobacterium HTCC5015]
 gi|198263307|gb|EDY87585.1| excinuclease ABC, B subunit [gamma proteobacterium HTCC5015]
          Length = 677

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/667 (53%), Positives = 482/667 (72%), Gaps = 9/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQPAAI  L  G  S    Q LLGVTGSGKTFTMA +++ +QRPA+++A
Sbjct: 9   FNIHSQYQPAGDQPAAIQNLRAGFESGLLRQTLLGVTGSGKTFTMANLVQDLQRPALILA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP N+VEYFVSYYDYYQPEAYVP +DT+IEK++++NE I++MR 
Sbjct: 69  HNKTLAAQLYGEMKEFFPENSVEYFVSYYDYYQPEAYVPSSDTFIEKDANVNEHIEQMRL 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++V++VS IYG+G   SY  M++ L +GD + Q+++L  L + QY R 
Sbjct: 129 SATKALMERRDVVIVATVSAIYGLGDPNSYMTMMLHLVVGDMINQRDILRRLAELQYTRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + R T+RV G+ I++ P+  E  A R+ +F +++E +S F PLTG+ +R ++ + +Y
Sbjct: 189 DMELRRATYRVRGEVIDVHPAESEREAVRIELFDDEVENLSIFDPLTGEVLRKLQRVTVY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR TL   +  +K ELK RL  L    +L+EAQRLEQR  YD+EM++  G C 
Sbjct: 249 PKTHYVTPRDTLVEMIDKVKAELKERLEHLRSVDKLVEAQRLEQRTMYDMEMIQELGYCN 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRNPGEPPP L +Y+P+D+L+ +DESHVT+ Q+  MY+GD  RK TL EY
Sbjct: 309 GIENYSRYLSGRNPGEPPPCLLDYLPDDALMIIDESHVTVSQVGAMYKGDRSRKETLVEY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+      T+ VSATPG +E E     +VEQ++RPTGLVDP +E
Sbjct: 369 GFRLPSALDNRPLRFDEFENTIGQTLFVSATPGPYEEEHADA-VVEQVVRPTGLVDPELE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI+  A    R+LLT LTKRMAEDLT+YL E  ++VRY+HS++ T+E
Sbjct: 428 VRPVATQVDDLLSEIHKRAAVDERVLLTTLTKRMAEDLTDYLMEHGVKVRYLHSDIDTVE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 488 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +VN + ILYAD IT S+Q A+DET RRR+KQ+  N++H I P++VK  + +++D      
Sbjct: 548 HVNGRAILYADKITGSMQRAMDETERRRDKQMAFNREHGIEPKTVKRSVEDILDAGYTPG 607

Query: 741 AATTNISIDAQQ----LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              ++    A+Q      LS  +    ++ L K+M   A NL FEEAA++RD++  L+  
Sbjct: 608 KPGSDRKKVAEQGEDYSGLSPAQASKEIEKLEKRMFEHARNLEFEEAAQLRDQMDTLRK- 666

Query: 797 PYFQGLD 803
              Q LD
Sbjct: 667 ---QALD 670


>gi|294495135|ref|YP_003541628.1| excinuclease ABC subunit B [Methanohalophilus mahii DSM 5219]
 gi|292666134|gb|ADE35983.1| Excinuclease ABC subunit B [Methanohalophilus mahii DSM 5219]
          Length = 658

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/659 (56%), Positives = 480/659 (72%), Gaps = 10/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI  L  GI+   + Q LLGVTGSGKTFTMA VI+ +QRP +V+A
Sbjct: 4   FELVSNYSPRGDQPQAIDNLSNGINGGFRHQTLLGVTGSGKTFTMANVIQNVQRPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+SEF++FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+SSINE+IDR+R 
Sbjct: 64  HNKTLAAQLFSEFRDFFPDNAVEYFVSYYDYYQPEAYLPTTDTYIEKDSSINEEIDRLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SL+ER D IVVSSVSCIY +GS + + +M + LK GD V++  +   LV  QY+R 
Sbjct: 124 SATKSLMERRDVIVVSSVSCIYNLGSPKEWQEMSLFLKPGDEVDRSWIFGKLVDIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET---I 377
           D+   +GTFR  GD++EIFP+  ++VA RV MFG++I+ IS F PLTG+ +R VE    +
Sbjct: 184 DVEFTQGTFRARGDTVEIFPAQ-DNVAVRVEMFGDEIDRISYFEPLTGKVVREVEDDMQV 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+V P+  ++ A+  I+EELK  + E EK+G+LLEAQR+ QR  +D+EM+E  G
Sbjct: 243 VIYPAKHFVMPQSQIDRALVSIEEELKDTVAEFEKQGQLLEAQRIMQRTRFDIEMIEELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+  GR PGE P +L ++ P+D LL +DESHVTIPQI GM+ GD  RK +L
Sbjct: 303 YCSGIENYSRHFDGRKPGEAPSSLLDFFPDDYLLIIDESHVTIPQIGGMHNGDRARKKSL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL + E+       + VSATP  +EL      +VEQIIRPTGLVDP
Sbjct: 363 IEYGFRLPSAFDNRPLNYREFEERINQAVYVSATPADYEL-GLSDQVVEQIIRPTGLVDP 421

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           PV++R    Q++D+ +E+   +++G R L+T LTK+MAEDLT+YL E  IRVRYMHS++ 
Sbjct: 422 PVQVRPVANQIDDLMEEVRKVSERGYRTLVTTLTKKMAEDLTDYLLEMGIRVRYMHSDID 481

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EI+R+LR G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 482 TLERAEIVRELRKGTFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQTIGR 541

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           A+RNV++  I+YAD IT S+  A+ E  RRR  QLE N+KHNI P S+ ++I   I  + 
Sbjct: 542 ASRNVDAYAIMYADRITGSMSRAMSEMERRRNIQLEFNRKHNITPTSIMKEIQREI--VE 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +E+ +T    +D   + LSK +  + L  L  +MH AA NL FEEAAR+RD I+ ++ +
Sbjct: 600 VEEVSTPAAGVD---MGLSKMEANSMLIDLEAEMHEAARNLEFEEAARLRDAIREMRET 655


>gi|289578950|ref|YP_003477577.1| excinuclease ABC subunit B [Thermoanaerobacter italicus Ab9]
 gi|289528663|gb|ADD03015.1| excinuclease ABC, B subunit [Thermoanaerobacter italicus Ab9]
          Length = 661

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/654 (55%), Positives = 481/654 (73%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L++G+    + Q LLGVTGSGKTFTMA +I+ + RP +V+A
Sbjct: 4   FKLVSNFKPTGDQPQAIEKLVEGVKKGYRFQTLLGVTGSGKTFTMANIIQKLNRPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SINE+ID++RH
Sbjct: 64  HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G    Y  +++ L+ G   ++ E++  LV  QY+R 
Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPIDYENLMLSLRPGMIKDRDEIIKKLVDIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD IEIFP+   + A RV +FG++I+ I+E   LTG+ +   + + I+
Sbjct: 184 DVNFTRGKFRVRGDVIEIFPASFSNKAIRVELFGDEIDRIAEIDVLTGEILGFRKHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T +  L  A+K I+EEL+ R  EL+  G+++EA+RL+QR  YDLEML+  G CQ
Sbjct: 244 PASHYATSKDKLERAIKSIREELEQRYKELKDAGKIVEAERLKQRTNYDLEMLQEMGYCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++GR PG PP TL +Y P+D L+F+DESHVTIPQI GMY GD  RK  L EY
Sbjct: 304 GIENYSRHISGRPPGSPPYTLLDYFPKDFLIFIDESHVTIPQIRGMYNGDRSRKEALVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I VSATPG +E+E  +  +VEQ+IRPTGLVDP V 
Sbjct: 364 GFRLPSAFDNRPLTFEEFEERINQVIFVSATPGPYEIEHSEQ-VVEQLIRPTGLVDPEVI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + QV+D+  EI     +G R+L+T LTK+MAEDLT+YL +  I+V+Y+HS+++T+E
Sbjct: 423 VRPVKGQVDDLIGEIRKTVDKGFRVLVTTLTKKMAEDLTDYLKDMGIKVKYLHSDIETIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YADT+T S++ AI+ET RRR+ Q+E+NKKH I P++V + + +VI+   +  
Sbjct: 543 NAEGRVIMYADTVTNSMKRAIEETNRRRKIQMEYNKKHGITPKTVIKGVRDVIEATHV-- 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A         +  +   +  K+ ++ L K+M  AA  L FE+AA++RD I  LK
Sbjct: 601 AEEEEKYKKKKVKTYDPEIIKSTIEQLEKEMKEAAIELQFEKAAKLRDVIFELK 654


>gi|74317586|ref|YP_315326.1| excinuclease ABC subunit B [Thiobacillus denitrificans ATCC 25259]
 gi|90111058|sp|Q3SIK7|UVRB_THIDA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|74057081|gb|AAZ97521.1| Excinuclease ABC, B subunit [Thiobacillus denitrificans ATCC 25259]
          Length = 675

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/658 (55%), Positives = 474/658 (72%), Gaps = 4/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA+L++GI      Q LLGVTGSGKT+TMA VI    RPA++MA
Sbjct: 10  FRLFQPFPPAGDQPTAIARLIEGIDDGLSYQTLLGVTGSGKTYTMANVIARAGRPALIMA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++MR 
Sbjct: 70  PNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPARDLFIEKDSSINEHIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER D ++V +VS IYGIG    Y  MI+ L+  D + Q+E+++ L + QY R 
Sbjct: 130 SATKSLLERRDTVIVCTVSAIYGIGDPSDYHSMILLLRQNDKMTQREVIARLTQMQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD I+IFP+   + A RV +F + +E +  F PLTGQ ++ V    ++
Sbjct: 190 DVDFKRGVFRVRGDVIDIFPAEHAETAIRVELFDDVVETLHLFDPLTGQILQKVSRFTVF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T   A++ IK EL+ RL       +L+EAQRLEQR  +DLEM+   G C+
Sbjct: 250 PSSHYVTPRETTLRAIEAIKVELRERLDWYYANNKLVEAQRLEQRTRFDLEMMVELGFCK 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GEPPPTL +Y+ +D+L+F+DESHVT+ Q+ GMY+GD  RK  L +Y
Sbjct: 310 GIENYSRHLSGRKAGEPPPTLIDYLAKDALMFIDESHVTVTQVGGMYKGDRSRKENLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P T+ VSATP  +E E   G +VEQ++RPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLKFEEFEALMPQTVFVSATPAKYEAEHA-GQVVEQLVRPTGLIDPIVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  E+      G R+L+T LTKRMAEDLT+YL E  ++VRY+HS++ T+E
Sbjct: 429 VRPVTTQVDDLMSEVKKRVAVGERVLVTTLTKRMAEDLTDYLAEHGVKVRYLHSDIDTVE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 489 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++N   ILYAD IT S+Q AI ET RRR KQ+  N +H I P+ V ++I ++ID +   D
Sbjct: 549 HLNGTAILYADRITDSMQRAIGETERRRAKQIAFNTEHGITPRGVVKRIKDIIDGVYDAD 608

Query: 741 AATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A+   +      A+   + +K     +K + K+M  AA NL FE+AA +RD++K LK+
Sbjct: 609 ASRQELKAAQTAAEYKVMDEKSLTKRVKKIEKEMQDAAKNLEFEKAAVLRDQLKELKA 666


>gi|183598214|ref|ZP_02959707.1| hypothetical protein PROSTU_01597 [Providencia stuartii ATCC 25827]
 gi|188020382|gb|EDU58422.1| hypothetical protein PROSTU_01597 [Providencia stuartii ATCC 25827]
          Length = 672

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/661 (55%), Positives = 473/661 (71%), Gaps = 7/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI QL +G+      Q LLGVTGSGKTFT+A VI    RP ++MA
Sbjct: 5   FKLYSDFQPGGDQPEAIRQLSEGLEDGLAHQTLLGVTGSGKTFTIANVIAKENRPTMLMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  HNKTLAAQLYSEMKAFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  +SY +M++ L  G  ++Q+ +L  L   QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDSYLKMMLHLTDGMIIDQRAILRRLADLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ    V    +Y
Sbjct: 185 DQAFTRGTFRVRGEVIDIFPAESDEYALRVELFDEEVERLSLFDPLTGQIQHRVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L +  +LLE QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILEAMEQIKVELADRRKVLLENNKLLEEQRITQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI  MY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRAPGEPPPTLFDYLPADGLLVVDESHVTIPQIGAMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++E+E+    ++EQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGNYEIEKSGSEVIEQVVRPTGLLDPVIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + +Q+  R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRIRSQKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S++ AI ET RRR KQ+  N++H I PQ + +KI +++       
Sbjct: 545 NLNGKAILYGDRITNSMEKAIKETERRRAKQIAFNEQHGIVPQGLNKKIGDILQIGHKVG 604

Query: 741 AATTNISIDAQQLS-------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             +   + ++ ++        LS K+ +  +  L  QM+  A +L FE AA +RD+++ L
Sbjct: 605 GKSKGRNKESAKIDKREDIQLLSTKELEQRISQLEAQMYKHAQDLEFEAAANVRDQLQEL 664

Query: 794 K 794
           +
Sbjct: 665 R 665


>gi|118602443|ref|YP_903658.1| excinuclease ABC subunit B [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567382|gb|ABL02187.1| Excinuclease ABC subunit B [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 664

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/662 (54%), Positives = 491/662 (74%), Gaps = 10/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + + PSGDQP AI  L+  +++  K Q LLGVTGSGKTFT+A VI+  +RP+++MA
Sbjct: 5   FQLISKFSPSGDQPEAIKTLIDSVNAGVKFQTLLGVTGSGKTFTLANVIQQTKRPSLIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSE K FFP+N+VEYFVSYYDYYQPEAYVP +DTYIEK+SSINEQI++MR 
Sbjct: 65  PNKTLAAQLYSEMKEFFPYNSVEYFVSYYDYYQPEAYVPASDTYIEKDSSINEQIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER+D I+++SVS IYG+G+ ESY  M++ L +G+   Q+E+L  L + QY R 
Sbjct: 125 SATKALLERDDVIIIASVSAIYGLGNPESYMAMLLHLSVGEVTNQREILLRLSQMQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ +IRG FRV G+ I+IFP+  E+   R+ MF  +IE++  F PLTG+K+++++ + IY
Sbjct: 185 DVTLIRGHFRVKGEVIDIFPADSEEQTIRIEMFDEEIEQLYWFDPLTGEKLKSLQRVTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTP+  +   +  IK ELK R  EL    +L+E QRL QR+  D+EM+   G C 
Sbjct: 245 PQTHYVTPKSKILNMLDDIKAELKDRRSELLSVNKLVEEQRLTQRVHMDIEMMRELGYCT 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+ +NPG+PP TL +Y+P+++L+ +DESHVT+ QI GMY+GD  RK TL ++
Sbjct: 305 GIENYSRYLSSQNPGDPPSTLLDYLPDNALVILDESHVTVSQIGGMYKGDRARKKTLVDF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+       I+VSATP  +ELE    +IVEQ++RPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLKFSEFEDRVHQCILVSATPAQYELE-VSSVIVEQVVRPTGLLDPEID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI +  + G R+L+T LTK+M+E L++YL + +++VRY+HS++ T+E
Sbjct: 424 IRPVDTQVDDLLSEIRMRVKAGERVLVTTLTKKMSEQLSDYLNDHHVKVRYLHSDIDTIE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RVEIIRDLRLGIFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           N+N  VILYA  ITKS+Q A+DET RRR KQ  +N K+NI P+ + + I+ ++D  L   
Sbjct: 544 NINGHVILYAARITKSMQKAMDETKRRRIKQQAYNLKNNITPEGIAKPIINILDTDLTSN 603

Query: 738 -LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +E+     + I    + L+KK     +K L KQM+  A++L FE AA +R++IK+LK +
Sbjct: 604 QIEEDNVQKVFIQLSPVQLAKK-----IKILEKQMYSFANDLAFEHAADMRNQIKQLKDT 658

Query: 797 PY 798
            +
Sbjct: 659 QF 660


>gi|170696608|ref|ZP_02887728.1| excinuclease ABC, B subunit [Burkholderia graminis C4D1M]
 gi|170138474|gb|EDT06682.1| excinuclease ABC, B subunit [Burkholderia graminis C4D1M]
          Length = 697

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/679 (54%), Positives = 486/679 (71%), Gaps = 8/679 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK + F    FQ+   Y P+GDQP AI  L++GI      Q LLGVTGSGKTFTMA  
Sbjct: 14  DESKFVRFEGSPFQLYQPYPPAGDQPTAIETLVEGIEDGLSFQTLLGVTGSGKTFTMANT 73

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQP+AYVP+ D +IEK+
Sbjct: 74  IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPKAYVPQRDLFIEKD 133

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 134 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQRDI 193

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RG+FRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 194 IARLIAMQYNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 253

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK EL+ RL     +G+L+EAQRLEQR  +
Sbjct: 254 RVRQKIPRFTVYPSSHYVTPRDTVVRAVETIKAELRERLEFFYSQGKLVEAQRLEQRTRF 313

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+++ +DESHV I Q++GMY 
Sbjct: 314 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAIMLLDESHVLIGQLNGMYN 373

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G + EQ+
Sbjct: 374 GDRARKENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-KKTAGQVAEQL 432

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R AR+QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 433 VRPTGLVDPEIEVRPARSQVDDVLAEINERVKAGDRVLVTVLTKRMAEQLTEFLADHGVK 492

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 493 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 552

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYAD +T S++ AIDET RRR KQ+  N +  I P+ V ++
Sbjct: 553 RSLIQTIGRAARNVNGKAILYADKVTDSMRRAIDETERRRAKQIAFNLERGITPRGVVKR 612

Query: 729 IMEVIDPILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           I ++ID +   D A   +      A+   +S+K+    LK L KQM   A NL FE+AA+
Sbjct: 613 IRDIIDGVYNVDDARAELKEQQTRAKFEDMSEKQLAKELKRLEKQMMEHAKNLEFEKAAQ 672

Query: 786 IRDEIKRLKSSPYFQGLDD 804
            RD++  L+   +   + D
Sbjct: 673 TRDQLALLRQRVFGANVGD 691


>gi|119469464|ref|ZP_01612368.1| excinuclease ABC subunit B [Alteromonadales bacterium TW-7]
 gi|119446999|gb|EAW28269.1| excinuclease ABC subunit B [Alteromonadales bacterium TW-7]
          Length = 664

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++ + P+GDQP AI QL +G+ +    Q LLG TG+GKTFTMA +I  + RP I+MA
Sbjct: 5   FQLKSQFKPAGDQPTAIKQLCEGLEAGLAHQTLLGATGTGKTFTMANIISDLNRPTIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYV  +DT+IEK++SINE I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPKNAVEYFVSYYDYYQPEAYVVSSDTFIEKDASINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  +SY +M++ LK+G+ V+Q+++L  L + QY R 
Sbjct: 125 SATKALLERRDTIIVASVSAIYGLGDPQSYMKMMLLLKVGEKVDQRDMLRRLAEIQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGT+RV G+ ++IFP+  E  A RV MF ++IE +S F PLTG   +++    IY
Sbjct: 185 DIEFSRGTYRVRGEVLDIFPAESETYAVRVEMFDDEIERLSIFDPLTGAVEKHIVRATIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK ELK R  +L    +L+E QR+ QR  YD+EM+   G C 
Sbjct: 245 PKTHYVTPREKILGAIENIKIELKDRRAQLLSANKLVEEQRIAQRTQYDIEMMTELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PG+PPPTL +Y+P+D+L+ +DESHVT+ QI  MY+GD  RK  L EY
Sbjct: 305 GIENYSRYLSGRTPGDPPPTLLDYLPDDALMIIDESHVTVSQIGAMYKGDRSRKENLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS MDNRPLRFEE+  + P TI VSATPG +E+E+  G + EQIIRPTGL+DP +E
Sbjct: 365 GFRMPSAMDNRPLRFEEFEAIAPQTIYVSATPGDFEMERSGGEVAEQIIRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI    ++G R+L+T LTKRM+EDLT+YL E  ++VRY+HS++ T+E
Sbjct: 425 VRPVGDQVDDLLSEIYHCVEKGERVLVTTLTKRMSEDLTDYLSEHGVKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRAGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSTRSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +++ + ILY D +TKS+  AIDET+RRRE Q ++N  + I P+++ +KI++V+D +  E 
Sbjct: 545 HLDGRAILYGDKVTKSMAKAIDETSRRREIQHQYNIDNGIEPRALAKKILDVMD-VGEEA 603

Query: 741 AATTNISIDAQQLS--LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               N+ +  ++    LS K+    +K L  +MH  A NL FE+A  +RDEI  L+
Sbjct: 604 GPKDNLQLIRKESKKVLSAKEIATQIKQLETKMHAYASNLEFEKAGSVRDEIHELQ 659


>gi|227112999|ref|ZP_03826655.1| excinuclease ABC subunit B [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 670

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/665 (55%), Positives = 473/665 (71%), Gaps = 15/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +++A
Sbjct: 5   FTLNSDFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMMLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTG  ++ V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHVLQTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +L+E QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEDIKVELADRKKVLLANDKLVEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI L A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRLRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILY D IT S+  AI ET RRREKQ  +N +H I PQ + +KI ++     L+ 
Sbjct: 545 NLRGKAILYGDKITASMAKAIGETERRREKQEAYNTEHGIVPQGINKKISDI-----LQL 599

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
              TN              A+   ++ K  +  ++ L  +M   A NL FEEAA +RDE+
Sbjct: 600 GQPTNKGKGRGNRKAAEPAARYELMTPKALELKIRELESKMLTHAQNLEFEEAAALRDEV 659

Query: 791 KRLKS 795
           + L++
Sbjct: 660 QALRA 664


>gi|261854977|ref|YP_003262260.1| excinuclease ABC subunit B [Halothiobacillus neapolitanus c2]
 gi|261835446|gb|ACX95213.1| excinuclease ABC, B subunit [Halothiobacillus neapolitanus c2]
          Length = 679

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/675 (54%), Positives = 487/675 (72%), Gaps = 27/675 (4%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F + TDY P+GDQPAAIA+L++G+      Q LLGVTGSGKTFT+A VI+ +QRPA+V
Sbjct: 4   TRFTLVTDYQPAGDQPAAIARLVEGLQDGLAQQTLLGVTGSGKTFTIANVIDRLQRPALV 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 64  LAPNKTLAAQLYGELKGFFPNNAVEYFVSYYDYYQPEAYVPASDTFIEKDASVNEHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V++VS IYG+G  ++Y +MI+ L  G+  +Q+++L  L + QY 
Sbjct: 124 RLSATKALLERRDVIIVATVSSIYGLGDPDAYLKMILHLVRGEKADQRQILRRLAEMQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RGT+RV GD I+I PS  +D   RV +F ++IE+IS F PLTG   R +    
Sbjct: 184 RNDMEFRRGTYRVRGDVIDIHPSESDDEGVRVELFDDEIEQISLFDPLTGAIRRRLPRFT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY +SHYVTPR  +  A++ IK+EL  +L  L  E +L+EAQRL QR  +D+EM+   G 
Sbjct: 244 IYPSSHYVTPRERILAAVESIKDELTQQLDHLNAENKLVEAQRLAQRTRFDIEMMYELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR+PGEPPP L++Y+P D+LL +DESHVT+PQ+  MY+GD  RK TL 
Sbjct: 304 CNGIENYSRYLSGRHPGEPPPCLYDYLPPDALLIIDESHVTVPQLGAMYKGDRSRKETLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            +GFRLPS +DNRPL+F+E+  + P TI VSATPG +E       +VEQ++RPTGL+DP 
Sbjct: 364 NFGFRLPSALDNRPLKFDEFERMMPQTIHVSATPGPYEGSHS-AQVVEQVVRPTGLIDPQ 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR   +QV+DV  EI   A +  R+L+T LTKRMAEDL +YL E ++RVRY+HS+V T
Sbjct: 423 IEIRPVASQVDDVLSEIRDRASRRERVLITTLTKRMAEDLADYLAEHDVRVRYLHSDVDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FD L+GINLLREGLDIPE  LVAI DADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGLFDALIGINLLREGLDIPEVSLVAIFDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN++ K ILYAD IT +++ AIDET RRR KQ+EHN +  I P+ + +++ +++     
Sbjct: 543 ARNLHGKAILYADRITDAMRKAIDETDRRRAKQIEHNLEQGITPKGIDKRVDDILQSGDY 602

Query: 735 ---------------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
                           ++ E A+  ++++ ++Q+    K+ +A       +M+  A +L 
Sbjct: 603 KIPGSRGASQRSRKMALVAEAASDFSVTMSSEQILKQIKEREA-------KMYRLAKDLE 655

Query: 780 FEEAARIRDEIKRLK 794
           FE AA IRDEI RL+
Sbjct: 656 FEAAAHIRDEIHRLQ 670


>gi|226939888|ref|YP_002794961.1| excinuclease ABC subunit B [Laribacter hongkongensis HLHK9]
 gi|226714814|gb|ACO73952.1| UvrABC system protein B [Laribacter hongkongensis HLHK9]
          Length = 669

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/662 (54%), Positives = 472/662 (71%), Gaps = 20/662 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++   + P+GDQP AIA L++G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 12  YRLHQPFPPAGDQPTAIAGLVEGLSDGLAFQTLLGVTGSGKTYTMANVIARTGRPAIIMA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 72  PNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER DCI+V++VS IYGIG    Y QMI+ LK GD   Q++++  L   QY R 
Sbjct: 132 SATKAILERPDCIIVATVSAIYGIGDPSDYHQMILHLKEGDKTAQRDIIKRLTVMQYDRA 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGTFRV GD I+IFP+   ++A R+S+F +++E +  F PLTG+    V    ++
Sbjct: 192 ELDFKRGTFRVRGDVIDIFPAESAELALRISLFDDEVETLHLFDPLTGRTDHRVGRFTVF 251

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL  R +  +  G+L+EAQR+EQR  +DLEML   G C+
Sbjct: 252 PSSHYVTPRATVLRACEAIKEELAARRMSFDLAGKLVEAQRIEQRTRFDLEMLYEMGFCK 311

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+ PGE PPTL +Y+P+ +L+ +DESHVT+PQI GMY+GD  RK  L EY
Sbjct: 312 GIENYSRHFSGKQPGEAPPTLIDYLPKSTLMIIDESHVTVPQIGGMYKGDRARKENLVEY 371

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  + P T+ VSATPG +E     G +VEQ++RPTGLVDP + 
Sbjct: 372 GFRLPSALDNRPLKFEEFERMMPQTVFVSATPGPYEASHA-GQVVEQVVRPTGLVDPQIS 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAE LT+Y  E  IRVRY+HS++ T+E
Sbjct: 431 VRPVTTQVDDLMSEITARAASNERVLVTTLTKRMAEQLTDYYTEHGIRVRYLHSDIDTVE 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 491 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N   ILYAD IT S++ AI ET RRR+KQ   N+ + I P+ V++KI ++ID +  E+
Sbjct: 551 NLNGLAILYADKITPSMERAIGETERRRQKQQAFNEANGIVPRGVQKKIKDIIDGVYHEE 610

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                          + K GK H        +K   KQM  AA +L FEEAAR+RD++++
Sbjct: 611 TGAP-----------APKAGKLHDPKQLARLIKDTEKQMLDAARDLRFEEAARLRDQLRQ 659

Query: 793 LK 794
           L+
Sbjct: 660 LR 661


>gi|295106063|emb|CBL03606.1| Excinuclease ABC subunit B [Gordonibacter pamelaeae 7-10-1-b]
          Length = 722

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/658 (54%), Positives = 493/658 (74%), Gaps = 2/658 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T  ++ + Y PSGDQP AI +L +G+    + Q LLGVTGSGKTFTMAK IEA+Q+P +V
Sbjct: 30  TPLKVVSPYEPSGDQPQAIEKLARGVEEGLRYQTLLGVTGSGKTFTMAKTIEAVQKPTLV 89

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQL SE K FFP+N+V YFVSYYDYYQPEAYVP +DT+IEK++SINE+++++
Sbjct: 90  MAPNKTLAAQLASELKEFFPNNSVVYFVSYYDYYQPEAYVPSSDTFIEKDASINEEVEKL 149

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R DCIVV+SVSCIYGIGS   Y+ M V +     +++ +++  L+  QY 
Sbjct: 150 RHAATSALLSRRDCIVVASVSCIYGIGSPMDYAGMAVFVDKQKEMDRDDVIHELIDIQYD 209

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D  + RGTFRV GD++++FP +  D   R+  +G++IE I+E   +TG+ +   E + 
Sbjct: 210 RNDYELKRGTFRVRGDNLDVFPPYA-DNPLRIEFWGDEIERIAEVDNVTGEVVNEFEALP 268

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SHYV  RP ++ A+  I++EL+ RL + ++EG+LLEAQRLE R  YDLEM+ET G 
Sbjct: 269 IWPASHYVATRPKMDRALGTIRDELRERLQQFKEEGKLLEAQRLEMRTNYDLEMMETMGF 328

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR++ GR+PGEPP TL +Y P+D L  +DESHVT+PQI GM+ GD  RK TLA
Sbjct: 329 CSGIENYSRHIDGRSPGEPPYTLIDYFPKDFLCIIDESHVTVPQIRGMHEGDRSRKITLA 388

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPSC+DNRPLRF+E+    P  + VSATPG +E +  Q   VEQIIRPTGL+DP 
Sbjct: 389 EHGFRLPSCLDNRPLRFDEFEERIPQFVYVSATPGDYEQKVSQQQ-VEQIIRPTGLLDPE 447

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R + +Q++D+ DE    A +  R+L+T LTK+MAEDLT++L ++ ++ RYMHS++ T
Sbjct: 448 IIVRGSASQIDDIIDESKDRAARDERVLITTLTKKMAEDLTDHLLDQGVKARYMHSDIAT 507

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER+EI+R+LR GKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR+  SLIQTIGRA
Sbjct: 508 LERVEILRELRQGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNHRSLIQTIGRA 567

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV+ +VI+YAD IT S+ LAIDET RRR  Q+++N+ H I PQ++++ I +++D +  
Sbjct: 568 ARNVSGQVIMYADKITDSMALAIDETKRRRTIQMQYNEDHGIEPQTIRKAINDIMDYVTD 627

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           E   TT   ++A+  +LS+++    + S+  +M  A+ ++++EEAAR+RD++ +L++S
Sbjct: 628 EVGNTTAEQVNAELAALSREEVLRIIASMEDEMASASQSMDYEEAARLRDQVVKLRAS 685


>gi|302877894|ref|YP_003846458.1| excinuclease ABC, B subunit [Gallionella capsiferriformans ES-2]
 gi|302580683|gb|ADL54694.1| excinuclease ABC, B subunit [Gallionella capsiferriformans ES-2]
          Length = 691

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/659 (54%), Positives = 483/659 (73%), Gaps = 4/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++   + P+GDQP AI QL++GI+     Q LLGVTGSGKT+TMA VI    RPA+VMA
Sbjct: 28  YRLHQPFEPAGDQPTAIEQLVEGINDGLAFQTLLGVTGSGKTYTMANVIARCGRPAMVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSE ++FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INEQI++MR 
Sbjct: 88  PNKTLAAQLYSELRDFFPENAVEYFVSYYDYYQPEAYVPSRDVFIEKDSAINEQIEQMRL 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER DCI+V++VS IYGIG    Y  MI+ L+  + + Q+E++  L++ QY+R 
Sbjct: 148 SATKALLEREDCIIVATVSAIYGIGDPVDYHGMILHLRNNEKMHQREVIKRLIEMQYERN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD I++FP+   + A R+++F +++E +S F PLTG   + V    +Y
Sbjct: 208 DVDFTRGRFRVRGDVIDVFPAESSEQALRITLFDDEVETLSLFDPLTGHIQQKVPRYTVY 267

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A++ IK EL  R+     E +L+EAQR+EQR  +DLEML   G  +
Sbjct: 268 PSSHYVTPRATVLQAIETIKVELAERIKYFVGENKLVEAQRIEQRTRHDLEMLTEIGFTK 327

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GRNPG+PPPTL +Y+P ++L+F+DESHV IPQ+  MY+GD  RK  L  Y
Sbjct: 328 GIENYSRHLSGRNPGDPPPTLLDYLPPNALMFLDESHVMIPQVGAMYKGDRARKENLVVY 387

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPLRF+E+  +   ++ VSATP  +E E   G +VEQ++RPTGLVDP + 
Sbjct: 388 GFRLPSAMDNRPLRFDEFEHIMRQSVFVSATPSVYEAEHA-GQVVEQVVRPTGLVDPIIL 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D+  EI L  + G R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T+E
Sbjct: 447 VRPAINQVDDLMSEIRLRIKVGERVLVTTLTKRMSEDLTEYLSEHGVKVRYLHSDIDTVE 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 507 RVEIIRDLRLGEFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +++   ILYAD IT S++ A+DET RRR KQ+ HN +H I PQ V+++I ++I+     D
Sbjct: 567 HLHGTAILYADRITDSMRRAMDETERRRTKQVAHNLEHGITPQGVQKRIKDIIEGTYELD 626

Query: 741 AATTNISIDAQQ---LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A  N     +Q   L++S+ +    +  L K+M  AA NL FE+A  +RD++K+L+ +
Sbjct: 627 DARLNQKAAQEQAKYLAMSRAQVTKEINRLEKEMLAAAKNLEFEKATTLRDQLKKLRDN 685


>gi|83589120|ref|YP_429129.1| excinuclease ABC subunit B [Moorella thermoacetica ATCC 39073]
 gi|83572034|gb|ABC18586.1| Excinuclease ABC subunit B [Moorella thermoacetica ATCC 39073]
          Length = 663

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/657 (57%), Positives = 479/657 (72%), Gaps = 4/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P GDQP AIA L++G+    + Q LLG TG+GKT+TMA+VI+A+QRP +V+A
Sbjct: 4   FILKSDYQPRGDQPRAIAALVEGLKKGYRHQTLLGATGTGKTYTMAQVIQAVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL  EFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++ID++RH
Sbjct: 64  PNKTLAAQLCGEFKEFFPDNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E YS +++ L+ G   ++  +L  LV  QY R 
Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGSPEDYSTLMLSLREGQEYDRDAILRKLVDIQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD IEIFP+   + A RV MFG++IE + E   LTG+ +     + ++
Sbjct: 184 DYDFKRGTFRVRGDVIEIFPASFTEKAIRVEMFGDEIERLLEIDTLTGEILGRRSHVAVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A++ I+ EL+ RL EL  +G+LLEAQRLEQR  +DLEM+   G C+
Sbjct: 244 PASHYVVEEAKMERALESIQAELEERLRELRAQGKLLEAQRLEQRTNFDLEMMREVGFCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGEPP TL +Y P+D L+ +DESH+T+PQI GMY GD  RK TL EY
Sbjct: 304 GIENYSRHLTGRAPGEPPYTLLDYFPDDFLMMIDESHITVPQIGGMYEGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       I VSATPG +ELE  Q  +VEQIIRPTGLVDP V 
Sbjct: 364 GFRLPSALDNRPLTFEEFCRHINQVIYVSATPGPYELEHSQQ-VVEQIIRPTGLVDPEVL 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI     +  R+L+T LTKRMAEDLT+YL E  ++VRYMHS++  +E
Sbjct: 423 VRPVKGQIDDLLAEIQKRVAKNQRVLVTTLTKRMAEDLTDYLREAGLKVRYMHSDIGAIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RMEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N   +VI+YADTIT S++ AIDET RRR+ Q+E+N++H I P++V + + EVI+     E
Sbjct: 543 NAEGQVIMYADTITDSMRRAIDETNRRRQIQMEYNRRHGITPRTVSKPVREVIEATRAAE 602

Query: 740 DAATTNISIDA--QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + A    + +   ++  LSK++ KA +  L K+M  AA  L FE AA +RD I  L+
Sbjct: 603 EPARYETAGEGARKKTKLSKRELKALISQLEKEMRAAAKRLEFERAAELRDAILELR 659


>gi|264678870|ref|YP_003278777.1| excinuclease ABC subunit B [Comamonas testosteroni CNB-2]
 gi|262209383|gb|ACY33481.1| excinuclease ABC, B subunit [Comamonas testosteroni CNB-2]
          Length = 688

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/660 (55%), Positives = 481/660 (72%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQPAAI +L++G++  E  Q LLGVTGSGKTFTMA VI  + +PAIV A
Sbjct: 22  FELFQPYPPAGDQPAAIEKLVEGVNDGESFQTLLGVTGSGKTFTMANVIARLGKPAIVFA 81

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR 
Sbjct: 82  PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 141

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+S++ER D ++V++VS IYGIG  ESY +MI+ L+ GD++ Q++ ++ L++ QY+R 
Sbjct: 142 SCTKSIMERRDVVIVATVSAIYGIGEPESYHRMIMTLRAGDTLNQRDAIAQLIRMQYQRN 201

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD+I++FP+   ++A R+ +F +++E +  F PLTG+  +N+    IY
Sbjct: 202 DQDFSRGTFRVRGDTIDVFPAEHSELAVRIELFDDEVESLQLFDPLTGRVRQNIPRFTIY 261

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR  +  A++ IKEEL  RL +L   G+L+EAQRLEQR  +DLEML   G C+
Sbjct: 262 PSSHYVTPRDKVLAAVETIKEELAERLKQLVGMGKLVEAQRLEQRTRFDLEMLSEVGHCK 321

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L+   PG+PP TL +Y+P D+++F+DESH  I Q++ MY GD  RK TL EY
Sbjct: 322 GIENYTRHLSASKPGDPPSTLTDYLPRDAIMFLDESHQMIGQLNAMYNGDRARKTTLVEY 381

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATP  +E     G +VEQ++RPTGLVDP +E
Sbjct: 382 GFRLPSALDNRPLKFEEFEQRMRQVVFVSATPAEYEKTHA-GQVVEQVVRPTGLVDPEIE 440

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DV  EI    +   R+L+T LTKRMAE LTEYL +  ++VRY+HS+V T+E
Sbjct: 441 VRPAIHQVDDVLQEIRQRVELEERVLITTLTKRMAEQLTEYLTDNGVKVRYLHSDVDTVE 500

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 501 RVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 560

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILYAD IT+S++ AI ET RRREKQ+  N+ + I P+ + +++ ++ID +  E 
Sbjct: 561 NVNGKAILYADRITESMKKAIGETERRREKQMAFNEANGIVPKQIVKRVKDLIDGVYSEK 620

Query: 741 AATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +      +  Q L       +S+K     +K L KQM   A NL FE+AAR+RD++  LK
Sbjct: 621 SGKEAERLQEQALQQARVEDMSEKDIAKEIKRLEKQMLEHARNLEFEQAARVRDQLSLLK 680


>gi|332283991|ref|YP_004415902.1| excinuclease ABC subunit B [Pusillimonas sp. T7-7]
 gi|330427944|gb|AEC19278.1| excinuclease ABC subunit B [Pusillimonas sp. T7-7]
          Length = 677

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/654 (55%), Positives = 475/654 (72%), Gaps = 1/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y P+GDQP AIA L +G++     Q LLGVTGSGKT+TMA VI    RPAIV+A
Sbjct: 19  FQLYQPYPPAGDQPTAIAALTEGMNDGLMYQTLLGVTGSGKTYTMANVIARTGRPAIVLA 78

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E + FFP+NAVEYFVSYYDYYQPEAYV   D +IEK+SSINE I++MR 
Sbjct: 79  PNKTLAAQLYAEMREFFPNNAVEYFVSYYDYYQPEAYVAARDLFIEKDSSINEHIEQMRL 138

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER D I+V +VSCIYGIG+   Y  M++ L+ GD + ++ELL  LV  QY+R 
Sbjct: 139 SATKSLLERRDTIIVGTVSCIYGIGNPGDYHAMVLTLRSGDRIARQELLGRLVAMQYERN 198

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FR  G+ I++FP+   ++A R+++F ++IE +  F PLTG+  + V    ++
Sbjct: 199 DVEFTRGAFRARGEIIDVFPAEHAELALRITLFDDEIETLEMFDPLTGKIKQKVPRFTVF 258

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A++ IKEEL+ R   L  +G+L+EAQRLEQR  +DLEML+  G C+
Sbjct: 259 PSSHYVTPRETVLRAIETIKEELRERSAVLVADGKLVEAQRLEQRTRFDLEMLQELGFCK 318

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHVT+ Q+S MYRGD  RK+TL ++
Sbjct: 319 GIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTMGQLSAMYRGDRSRKSTLVQF 378

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+ EE+       + VSATP ++E E     +VEQ++RPTGLVDP VE
Sbjct: 379 GFRLPSAMDNRPLQLEEFEQRMRQCVFVSATPANYEKEHSDN-VVEQVVRPTGLVDPVVE 437

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI L      R+L+T LTKRM+EDLT+YL E  ++VRY+HS++ T+E
Sbjct: 438 VRPALTQVDDLVGEIKLRIAVQERVLVTTLTKRMSEDLTDYLTENGLKVRYLHSDIDTVE 497

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 498 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 557

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD IT S+  A+ ET RRR KQL+ NK+H I  + V + + E+ID ++++ 
Sbjct: 558 NLNGKAILYADRITDSMYRAMGETERRRHKQLDFNKEHGITARGVSKAVREMIDGVMVDP 617

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A  +   + +  +    K     ++ L K M   A NL FE+AA  RD + RLK
Sbjct: 618 AQASAADLISPDVLRDDKSLAKEIRRLEKLMMDHAKNLEFEQAAAARDALNRLK 671


>gi|187923393|ref|YP_001895035.1| excinuclease ABC subunit B [Burkholderia phytofirmans PsJN]
 gi|187714587|gb|ACD15811.1| excinuclease ABC, B subunit [Burkholderia phytofirmans PsJN]
          Length = 697

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/679 (54%), Positives = 484/679 (71%), Gaps = 8/679 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK + F    FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  
Sbjct: 14  DESKFVRFEGSPFQLYQPYPPAGDQPTAIDTLVEGVEDGLSFQTLLGVTGSGKTFTMANT 73

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 74  IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 133

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y +MI+ L+ GD + Q+++
Sbjct: 134 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHKMILTLRTGDKLGQRDI 193

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RG+FRV GD+I+IFP+   ++A RV +F ++IE +  F PLTG
Sbjct: 194 IARLIAMQYNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEIETLQLFDPLTG 253

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK EL+ RL      G+L+EAQRLEQR  +
Sbjct: 254 RVRQKIPRFTVYPSSHYVTPRDTVVRAVETIKAELRERLEFFYSGGKLVEAQRLEQRTRF 313

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY 
Sbjct: 314 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYN 373

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G + EQ+
Sbjct: 374 GDRARKENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-QKTAGQVAEQL 432

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R AR+QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 433 VRPTGLVDPEIEVRPARSQVDDVLGEINERVKAGDRVLVTVLTKRMAEQLTEFLADHGVK 492

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 493 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 552

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILY D IT S++ AIDET RRR KQ+  N  + I P+ V ++
Sbjct: 553 RSLIQTIGRAARNVNGKAILYGDKITDSMRRAIDETERRRNKQIAFNLANGITPRGVVKR 612

Query: 729 IMEVIDPILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           I ++ID +   D A   +      A+   +S+K+    LK L KQM   A NL FE+AA+
Sbjct: 613 IRDIIDGVYNVDDARAELKEQQARAKFEDMSEKQLAKELKRLEKQMMEHAKNLEFEKAAQ 672

Query: 786 IRDEIKRLKSSPYFQGLDD 804
            RD++  L+   +   + D
Sbjct: 673 TRDQLALLRQRVFGANVGD 691


>gi|209520642|ref|ZP_03269395.1| excinuclease ABC, B subunit [Burkholderia sp. H160]
 gi|209498925|gb|EDZ99027.1| excinuclease ABC, B subunit [Burkholderia sp. H160]
          Length = 697

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/679 (53%), Positives = 485/679 (71%), Gaps = 8/679 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK + F    F++   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  
Sbjct: 14  DESKFVMFEGSPFKLYQPYPPAGDQPTAIETLVEGVGDGLAFQTLLGVTGSGKTFTMANT 73

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 74  IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 133

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++
Sbjct: 134 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDRLGQRDV 193

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RG+FRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 194 ITRLIAMQYSRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVEALQLFDPLTG 253

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK EL+ RL     +G+L+EAQRLEQR  +
Sbjct: 254 RVRQKIPRFTVYPSSHYVTPRDTVLRAVETIKAELRDRLEFFYSDGKLVEAQRLEQRTRF 313

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+++ +DESHV I Q++GMY 
Sbjct: 314 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAIMMLDESHVLIGQLNGMYN 373

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G + EQ+
Sbjct: 374 GDRARKENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-KKTSGQVAEQL 432

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R AR+QV+DV  EIN   + G R+L+T LTKRMAE LTE+L +  I+
Sbjct: 433 VRPTGLVDPEIEVRPARSQVDDVLGEINERIKAGDRVLVTTLTKRMAEQLTEFLADHGIK 492

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 493 VRYLHSDIDTVERVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 552

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILY D IT S++ AIDET RRR KQ+  N  H I P+ V ++
Sbjct: 553 RSLIQTIGRAARNVNGKAILYGDNITDSMRRAIDETERRRAKQIAFNAAHGITPRGVVKR 612

Query: 729 IMEVIDPILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           I ++ID +   D A   +    + A+   +S+K+    +K L KQM   A NL FE+AA+
Sbjct: 613 IRDIIDGVYNVDEARAELKEQQVRAKFEDMSEKQLAKEIKRLEKQMMEHAKNLEFEKAAQ 672

Query: 786 IRDEIKRLKSSPYFQGLDD 804
            RD++  L+   +   + D
Sbjct: 673 TRDQLALLRQRVFGANVGD 691


>gi|157146587|ref|YP_001453906.1| excinuclease ABC subunit B [Citrobacter koseri ATCC BAA-895]
 gi|189037956|sp|A8AJ07|UVRB_CITK8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|157083792|gb|ABV13470.1| hypothetical protein CKO_02348 [Citrobacter koseri ATCC BAA-895]
          Length = 673

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/669 (56%), Positives = 480/669 (71%), Gaps = 22/669 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    ++   IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTIQRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK+EL  R   +++  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKDELVDRRRIMQENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GM+RGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMFRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGEVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI L A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRLRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++       
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQLYNEEHGIVPQGLNKKVVDIL------- 597

Query: 741 AATTNISIDAQ---------------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           A   NI+                   ++ ++ K  +  +  L  QM   A NL FEEAA 
Sbjct: 598 ALGQNIAKTKAKGKGKSRAAAKSGVVEMDMTPKALQQKIHELEGQMMQHAQNLEFEEAAE 657

Query: 786 IRDEIKRLK 794
           IRD++ +L+
Sbjct: 658 IRDQLHQLR 666


>gi|291616772|ref|YP_003519514.1| UvrB [Pantoea ananatis LMG 20103]
 gi|291151802|gb|ADD76386.1| UvrB [Pantoea ananatis LMG 20103]
 gi|327393198|dbj|BAK10620.1| UvrABC system protein B UvrB [Pantoea ananatis AJ13355]
          Length = 673

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/671 (55%), Positives = 476/671 (70%), Gaps = 15/671 (2%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           SKD   F++ + + PSGDQP AI +L  G+      Q LLGVTGSGKTFT+A VI  + R
Sbjct: 2   SKD---FKLNSAFKPSGDQPEAIRRLEAGLEDGLAHQTLLGVTGSGKTFTVANVIADLNR 58

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+APNK LAAQLY E K FFP NAVE+FVSYYDYYQPEAYVP +DT+IEK++S+NE 
Sbjct: 59  PTMVLAPNKTLAAQLYGEMKEFFPDNAVEFFVSYYDYYQPEAYVPSSDTFIEKDASVNEH 118

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L +
Sbjct: 119 IEQMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSE 178

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V
Sbjct: 179 LQYTRNDQAFQRGTFRVRGEVIDIFPAESDDMALRVELFDEEVERLSLFDPLTGQVESVV 238

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               IY  +HYVTPR  +  AM+ IK EL  R   L +  +LLE QR+ QR  +DLEM+ 
Sbjct: 239 PRFTIYPKTHYVTPRERILQAMEDIKVELADRRKTLLENNKLLEEQRITQRTQFDLEMMG 298

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK
Sbjct: 299 ELGYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL EYGFRLPS +DNRP++FEE+  L P TI VSATPG +ELE+    +++Q++RPTGL
Sbjct: 359 ETLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGKYELEKSGDEVIDQVVRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+R   TQV+D+  EI        R+L+TVLTKRMAEDLTEYL E   +VRY+HS
Sbjct: 419 LDPILEVRPVATQVDDLLSEIRQRVTINERVLVTVLTKRMAEDLTEYLEEHGEKVRYLHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 479 DIDTVERMEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN+N K ILY D IT S+  AI+ET RRREKQ  HN+++ I PQ + +KI ++++
Sbjct: 539 IGRAARNINGKAILYGDKITPSMARAIEETERRREKQQRHNEENGIVPQGLNKKITDILE 598

Query: 735 PILLEDAATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
             L  +   T              DA  L+LS +  +  +  L  QM   A NL FE+AA
Sbjct: 599 --LGNNVVKTRGKAKPAKRNAAEADADYLALSPQALQKKIHELEGQMQQHAQNLEFEQAA 656

Query: 785 RIRDEIKRLKS 795
            +RD+++ L++
Sbjct: 657 GLRDQLQELRT 667


>gi|332526729|ref|ZP_08402831.1| excinuclease ABC subunit B [Rubrivivax benzoatilyticus JA2]
 gi|332111132|gb|EGJ11164.1| excinuclease ABC subunit B [Rubrivivax benzoatilyticus JA2]
          Length = 703

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/668 (54%), Positives = 484/668 (72%), Gaps = 8/668 (1%)

Query: 138 ITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
           +TF    FQ+   Y P+GDQP AI QL++G+H     Q LLGVTGSGKTFTMA VI  + 
Sbjct: 17  VTFADSPFQLFQPYPPAGDQPTAINQLVEGVHDGLSYQTLLGVTGSGKTFTMANVIARLG 76

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE
Sbjct: 77  RPAIVFAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINE 136

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
            I++MR SAT+S+LER D ++V++VS IYGIG  E Y+QM + +++GD + Q+++++ LV
Sbjct: 137 HIEQMRLSATKSILERRDVVIVATVSAIYGIGKPEDYTQMRLIVRVGDKMGQRDVIARLV 196

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R +I   RG+FRV GD+I++FP+   ++A R+ +F ++IE ++   PLTG+  + 
Sbjct: 197 AMQYTRNEIDFGRGSFRVRGDTIDVFPAEHSELALRIELFDDEIESLALLDPLTGRVRQK 256

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           V    IY +SHYVTPR  +  A+  IK EL+ R+    K G+L+EAQR+EQR  +D+EML
Sbjct: 257 VPRFVIYPSSHYVTPREQVLRAVDGIKAELRERVDFFVKNGKLVEAQRVEQRTRFDVEML 316

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           +  G C+ IENY+R+L+G  PGEPP TL +Y+P D+++F+DESHV I Q  GMY GD  R
Sbjct: 317 QEVGHCKGIENYTRHLSGAAPGEPPSTLVDYLPRDAIMFLDESHVLIGQFGGMYNGDRAR 376

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL EYGFRLPS +DNRPLRFEE+       + V+ATP  +E +   G +VEQ++RPTG
Sbjct: 377 KTTLVEYGFRLPSALDNRPLRFEEFERRMRQAVFVTATPADYE-KTHSGQVVEQVVRPTG 435

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           LVDP VE+R A TQV+DV  EI        R+L+T LTKRMAE LT+YL +  ++VRY+H
Sbjct: 436 LVDPEVEVRPASTQVDDVLQEIRERVDVNERVLITTLTKRMAEQLTDYLSDNGVKVRYLH 495

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ T+ER+EI+RDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQ
Sbjct: 496 SDIDTVERVEILRDLRLGLFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQ 555

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAARN   K ILYAD IT S++ AIDET RRR KQ+ HN+   I P++V ++I ++I
Sbjct: 556 TIGRAARNARGKAILYADKITDSMRRAIDETERRRAKQIAHNEAMGIVPRTVNKRIRDLI 615

Query: 734 DPILLEDAATTNI---SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           D ++ +  A   +      A+  ++S+K     +K+L KQM   A NL FE+AAR+RD++
Sbjct: 616 DGVVSDKTAKDELQSAQAAAEVEAMSEKDLGKRIKALEKQMLEHARNLEFEKAARVRDQL 675

Query: 791 KRLKSSPY 798
             L+   +
Sbjct: 676 ALLREQAF 683


>gi|269216206|ref|ZP_06160060.1| excinuclease ABC subunit B [Slackia exigua ATCC 700122]
 gi|269130465|gb|EEZ61543.1| excinuclease ABC subunit B [Slackia exigua ATCC 700122]
          Length = 719

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/666 (55%), Positives = 486/666 (72%), Gaps = 6/666 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AIA L +G+    + Q LLGVTGSGKTFTMAK IEA+Q+P +VMA
Sbjct: 27  FKVVSPYEPSGDQPQAIASLAEGVERGLRYQTLLGVTGSGKTFTMAKTIEAVQKPTLVMA 86

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E K FFPHNAV YFVSYYDYYQPEAYVP+TDT+IEK++SINE+++++RH
Sbjct: 87  PNKTLAAQLAAELKEFFPHNAVVYFVSYYDYYQPEAYVPQTDTFIEKDASINEEVEKLRH 146

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT SLL R D IVV+SVSCIYGIGS   Y+ M V +      E+ +++  L+  QY R 
Sbjct: 147 AATSSLLSRRDVIVVASVSCIYGIGSPMDYAGMAVFVDRQKPAERDDVIHQLIDIQYDRN 206

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGTFRV GD++++FP +  D   R+  +G++IE I E   LTG+ + + E I I+
Sbjct: 207 DYELSRGTFRVRGDALDVFPPY-ADNPLRIEFWGDEIESIQEIDNLTGEVLMSFEAIPIW 265

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT RP +  A+  I+EEL+ RL +L  EG+LLEAQRLE R  YDLEMLET G C 
Sbjct: 266 PASHYVTARPKMRKAIGTIQEELRGRLEQLRAEGKLLEAQRLEMRTNYDLEMLETMGFCS 325

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR+PGEPP TL +Y P+D L  +DESHVT+PQI GM+ GD  RK TLAE+
Sbjct: 326 GIENYSRHLDGRSPGEPPYTLIDYFPDDFLCIIDESHVTVPQIRGMHEGDRSRKVTLAEH 385

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPLRF+E+    P  I VSATPG +E  +     VEQIIRPTGL+DP +E
Sbjct: 386 GFRLPSCLDNRPLRFDEFEERVPQFIYVSATPGDYE-NRVSERRVEQIIRPTGLLDPEIE 444

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   +Q++D+ DE    +    R+L+T LTK+MAEDLT++L ++ IR RYMHS++ TLE
Sbjct: 445 VRPIASQIDDIIDEARARSDAHERVLITTLTKKMAEDLTDHLLDQGIRSRYMHSDIGTLE 504

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR+  SLIQTIGRAAR
Sbjct: 505 RVEILRDLRTGEFDVLVGINLLREGLDLPEVTLVAILDADKEGFLRNHRSLIQTIGRAAR 564

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ KVI+YAD IT S+ LAI ET RRR  Q+ +N++H I P+++++ I +V+  I   D
Sbjct: 565 NVSGKVIMYADKITDSMDLAITETRRRRAIQMAYNEEHGIEPKTIRKAINDVMGFITDGD 624

Query: 741 AATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
                 + D  ++     +G+    +  + ++M  A+++++FEEAAR+RD++ +L++   
Sbjct: 625 NNEVGTAEDVNKVLAELSRGEVMRIIAGMEEEMASASESMDFEEAARLRDQVVKLRAQ-- 682

Query: 799 FQGLDD 804
            +G D+
Sbjct: 683 MEGTDE 688


>gi|163857092|ref|YP_001631390.1| excinuclease ABC subunit B [Bordetella petrii DSM 12804]
 gi|229557958|sp|A9IR19|UVRB_BORPD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|163260820|emb|CAP43122.1| excinuclease ABC subunit B [Bordetella petrii]
          Length = 675

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/642 (56%), Positives = 466/642 (72%), Gaps = 1/642 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   Y P+GDQPAAI  L +G+      Q LLGVTGSGKT+TMA +I  + RPA+V+A
Sbjct: 14  FHLYQPYPPAGDQPAAIEGLAQGMRDGLMYQTLLGVTGSGKTYTMANIIARLGRPALVLA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++MR 
Sbjct: 74  PNKTLAAQLYAEMREFFPKNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRL 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER D ++V +VSCIYGIG+   Y  M++ L+ GD + ++E+L+ LV  QY R 
Sbjct: 134 SATKSLLERRDTVIVGTVSCIYGIGNPGDYHAMVLILRAGDRISRREVLARLVAMQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G++++IFP+   ++A R+++F ++IE +  F PLTG+  + V    +Y
Sbjct: 194 DADFARGTFRVRGETLDIFPAESPELALRLTLFDDEIESLELFDPLTGRVRQKVPRFTVY 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR T+  A++ IKEEL+ RL  L  EG+L+EAQRLEQR  +DLEML+  G C+
Sbjct: 254 PGSHYVTPRDTVLRAIETIKEELRDRLKLLTAEGKLVEAQRLEQRTRFDLEMLQELGFCK 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHVT+ Q+ GMYRGD  RK TL +Y
Sbjct: 314 GIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTMGQLGGMYRGDRARKETLVQY 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATP ++E E     +VEQ++RPTGLVDP VE
Sbjct: 374 GFRLPSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHSDN-VVEQVVRPTGLVDPQVE 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R ARTQV+D+  EI L      R+L+T LTKRMAEDLT++L E  +RVRY+HS++ T+E
Sbjct: 433 VRPARTQVDDLLGEIKLRVAAQERVLVTTLTKRMAEDLTDFLAEHGVRVRYLHSDIDTVE 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 493 RVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N   ILYAD IT S++ A+DET RRR KQL  N +H I  + V + + E+ID I+   
Sbjct: 553 NLNGHAILYADAITASMRRAMDETERRRTKQLAFNAEHGITARGVNKAVRELIDGIVAPA 612

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
              T  S  A ++   +K     ++ L K M   A NL FE+
Sbjct: 613 RHDTLESAIAPEVLADEKSVAREIRRLEKLMTDHARNLEFEQ 654


>gi|299532419|ref|ZP_07045811.1| excinuclease ABC subunit B [Comamonas testosteroni S44]
 gi|298719657|gb|EFI60622.1| excinuclease ABC subunit B [Comamonas testosteroni S44]
          Length = 688

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/660 (55%), Positives = 480/660 (72%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQPAAI +L++G++  E  Q LLGVTGSGKTFTMA VI  + +PAIV A
Sbjct: 22  FELFQPYPPAGDQPAAIEKLVEGVNDGESFQTLLGVTGSGKTFTMANVIARLGKPAIVFA 81

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR 
Sbjct: 82  PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 141

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+S++ER D ++V++VS IYGIG  ESY +MI+ L+ GD++ Q++ ++ L++ QY+R 
Sbjct: 142 SCTKSIMERRDVVIVATVSAIYGIGEPESYHRMIMTLRAGDTLNQRDAIAQLIRMQYQRN 201

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD+I++FP+   ++A R+ +F +++E +  F PLTG+  +N+    IY
Sbjct: 202 DQDFSRGTFRVRGDTIDVFPAEHSELAVRIELFDDEVESLQLFDPLTGRVRQNIPRFTIY 261

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  +  A++ IKEEL  RL +L   G+L+EAQRLEQR  +DLEML   G C+
Sbjct: 262 PGSHYVTPRDKVLAAVETIKEELAERLKQLVGMGKLVEAQRLEQRTRFDLEMLSEVGHCK 321

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L+   PG+PP TL +Y+P D+++F+DESH  I Q++ MY GD  RK TL EY
Sbjct: 322 GIENYTRHLSASQPGDPPSTLTDYLPRDAIMFLDESHQMIGQLNAMYNGDRARKTTLVEY 381

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATP  +E     G +VEQ++RPTGLVDP +E
Sbjct: 382 GFRLPSALDNRPLKFEEFEQRMRQVVFVSATPAEYEKTHA-GQVVEQVVRPTGLVDPEIE 440

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DV  EI    +   R+L+T LTKRMAE LTEYL +  ++VRY+HS+V T+E
Sbjct: 441 VRPAIHQVDDVLQEIRQRVELEERVLITTLTKRMAEQLTEYLTDNGVKVRYLHSDVDTVE 500

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 501 RVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 560

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILYAD IT+S++ AI ET RRREKQ+  N+ + I P+ + +++ ++ID +  E 
Sbjct: 561 NVNGKAILYADRITESMKKAIGETERRREKQMAFNEANGIVPKQIVKRVKDLIDGVYSEK 620

Query: 741 AATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +      +  Q L       +S+K     +K L KQM   A NL FE+AAR+RD++  LK
Sbjct: 621 SGKEAERLQEQALQQARVEDMSEKDIAKEIKRLEKQMLEHARNLEFEQAARVRDQLSLLK 680


>gi|294340539|emb|CAZ88923.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
           [Thiomonas sp. 3As]
          Length = 697

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/668 (55%), Positives = 481/668 (72%), Gaps = 6/668 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQP AIAQL +G+      Q LLGVTGSGKT+TMA VI  M RPAIV A
Sbjct: 23  FRLYQPYPPAGDQPTAIAQLAEGLGDGLSYQTLLGVTGSGKTYTMANVIARMGRPAIVFA 82

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR 
Sbjct: 83  PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 142

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER D ++V+SVS IYGIG+   Y  MI+ ++ GD + Q+++++ LV+ QY+R 
Sbjct: 143 SATKSLLERRDVVIVASVSAIYGIGNPSDYHAMILTVRTGDRMGQRDVIAQLVRMQYQRN 202

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGTFRV GD I++FP+   ++A R+ +F ++IE +S F PLTG   + +    IY
Sbjct: 203 EVDFTRGTFRVRGDRIDVFPAEHAELAVRIELFDDEIESLSLFDPLTGVVRQKIPRFTIY 262

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR  +  A + IK+EL+ R+ EL   G+L+EAQRLEQR  +DLEML   G C+
Sbjct: 263 PSSHYVTPREKVLEAAEGIKQELRERVKELTGMGKLVEAQRLEQRTRFDLEMLTEIGHCK 322

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G  PGEPPPTL +Y+P D+++F+DESHV I Q +GMY GD  RK TL +Y
Sbjct: 323 GIENYSRHLSGAAPGEPPPTLVDYLPPDAIMFLDESHVLIGQFNGMYNGDRARKQTLVDY 382

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+      T+ VSATP  +E +     +VEQ++RPTGLVDP +E
Sbjct: 383 GFRLPSALDNRPLKFAEFERKMRQTVFVSATPADYESQHADQ-VVEQVVRPTGLVDPLIE 441

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A +QV+DV  EI L   +G R+L+T LTKRMAE LT+YL E  ++VRY+HS++ T+E
Sbjct: 442 VRPASSQVDDVLGEIRLRVNKGERVLITTLTKRMAEQLTDYLDENGVKVRYLHSDIDTVE 501

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 502 RVEILRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 561

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILY D IT S++ AIDET RRR KQ+  N +H I P ++ + + ++ID ++   
Sbjct: 562 NVNGMAILYGDRITDSMRRAIDETERRRAKQIAFNTEHGITPTALNKSVRDLIDGVVQTP 621

Query: 741 AA---TTNISIDAQQLSLSKKKGKA-HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                  ++  +  +L +   +  A  +K L K+M   A NL FE+AAR+RD++  L+  
Sbjct: 622 GKGLRAGSVEREIAELQIDNAQDVAREIKRLEKRMIEHARNLEFEQAARVRDQLGLLRQR 681

Query: 797 PYFQGLDD 804
             F G DD
Sbjct: 682 -VFGGGDD 688


>gi|283833926|ref|ZP_06353667.1| excinuclease ABC subunit B [Citrobacter youngae ATCC 29220]
 gi|291070598|gb|EFE08707.1| excinuclease ABC subunit B [Citrobacter youngae ATCC 29220]
          Length = 673

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/662 (56%), Positives = 473/662 (71%), Gaps = 8/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTISRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKVELAERRKILLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPVIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRTRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733
           N+N K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++       
Sbjct: 545 NINGKAILYGDKITASMARAIGETERRREKQQRYNEEHGITPQGLNKKVVDILALGQSIA 604

Query: 734 -DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                 +  +      D  +L ++ K  +  +  L  QM   A NL FEEAA IRD++ +
Sbjct: 605 KTKAKGKGKSRAGAKSDVVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAATIRDQLHQ 664

Query: 793 LK 794
           L+
Sbjct: 665 LR 666


>gi|115380116|ref|ZP_01467152.1| excinuclease ABC, B subunit [Stigmatella aurantiaca DW4/3-1]
 gi|310820625|ref|YP_003952983.1| UvrABC system protein B [Stigmatella aurantiaca DW4/3-1]
 gi|115362876|gb|EAU62075.1| excinuclease ABC, B subunit [Stigmatella aurantiaca DW4/3-1]
 gi|309393697|gb|ADO71156.1| UvrABC system protein B [Stigmatella aurantiaca DW4/3-1]
          Length = 702

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/659 (54%), Positives = 471/659 (71%), Gaps = 11/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + + P GDQP AIA+L +G+   ++ Q LLGVTGSGKTFTMA +I  +QRP +++A
Sbjct: 10  FQIVSAHAPQGDQPRAIAELTEGVLRGDRYQTLLGVTGSGKTFTMANLIANVQRPTLIIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK  FPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSIN++I+RMRH
Sbjct: 70  HNKTLAAQLYGEFKEVFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINDEIERMRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL  R+D ++V+SVSCIYG+G+  SY  M   + +G  + +   +  L++ QY+R 
Sbjct: 130 SATHSLRTRDDVVIVASVSCIYGLGAARSYVDMAATVTLGAELGRDAFMRKLIESQYERS 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFR  GD++E+FP++ E+ A RVS FG+++E+I+EF PL G  +  ++ I I+
Sbjct: 190 DFDFHRGTFRARGDTVEVFPAYEEERAVRVSFFGDEVEKITEFDPLRGVTLGTLDKIVIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T   T   A++ I++EL  RL E +++G+LLEAQR+EQR  +DLEM+E  G C 
Sbjct: 250 PASHYATEGDTRKKAVQTIRDELSERLQEFKRDGKLLEAQRIEQRTMFDLEMIEQVGFCN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +GR PGEPPP L +Y P + L+ VDESH T+ QI  MYRGD  RK TL  Y
Sbjct: 310 GIENYSRHFSGRAPGEPPPCLIDYFPRNMLVLVDESHQTVSQIGAMYRGDRSRKETLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  +    + VSATP  +EL++ +G++VEQIIRPTGL DP VE
Sbjct: 370 GFRLPSALDNRPLKFTEFEEMVQQAVFVSATPAEYELQKSKGVVVEQIIRPTGLTDPEVE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R AR QV+D+ +E+     Q  R+L T LTKRMAEDLTEY  +  ++VRY+HS++  +E
Sbjct: 430 VRPARNQVDDLLEEVRKRVAQKERVLATTLTKRMAEDLTEYFTDVGVKVRYLHSDIGAIE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  IIRDLR G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RTAIIRDLRKGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHVSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV-----IDP 735
           N++  VI+Y+D+IT S++ AI+ET RRRE Q  +N++H I P+SVK  I+++      DP
Sbjct: 550 NLHGHVIMYSDSITDSMKRAIEETRRRREVQRAYNQEHGITPRSVKSAILDLSLQYDADP 609

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L  AA      DA    L  K+ K  ++   K M  AAD + FE+AA+ RD I  LK
Sbjct: 610 TALPLAA------DAANDVLDTKEIKRLIEEFTKDMQHAADEMQFEKAAQFRDRIVLLK 662


>gi|168240658|ref|ZP_02665590.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449193|ref|YP_002044826.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|238690602|sp|B4TC52|UVRB_SALHS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|194407497|gb|ACF67716.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205339909|gb|EDZ26673.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 673

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/669 (56%), Positives = 477/669 (71%), Gaps = 22/669 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSAMDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++       
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL------- 597

Query: 741 AATTNISIDAQ---------------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           A   NI+                   +L ++ K  +  +  L  QM   A NL FEEAA+
Sbjct: 598 ALGQNIAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQ 657

Query: 786 IRDEIKRLK 794
           IRD++ +L+
Sbjct: 658 IRDQLHQLR 666


>gi|296162458|ref|ZP_06845249.1| excinuclease ABC, B subunit [Burkholderia sp. Ch1-1]
 gi|295887271|gb|EFG67098.1| excinuclease ABC, B subunit [Burkholderia sp. Ch1-1]
          Length = 697

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/679 (53%), Positives = 487/679 (71%), Gaps = 8/679 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK ++F    FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  
Sbjct: 14  DESKFVSFEGSPFQLYQPYPPAGDQPTAIDTLVEGVEDGLAFQTLLGVTGSGKTFTMANT 73

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 74  IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 133

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y +MI+ L+ GD + Q+++
Sbjct: 134 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHRMILTLRTGDKLGQRDI 193

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RG+FRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 194 IARLIAMQYNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 253

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK EL+ RL      G+L+EAQRLEQR  +
Sbjct: 254 RVRQKIPRFTVYPSSHYVTPRDTVVRAVETIKTELRERLEFFYSGGKLVEAQRLEQRTRF 313

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+++ +DESHV I Q++GMY 
Sbjct: 314 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAIMMLDESHVLIGQLNGMYN 373

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G + EQ+
Sbjct: 374 GDRARKENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-QKTAGQVAEQL 432

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R AR+QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 433 VRPTGLVDPEIEVRPARSQVDDVLGEINERVKVGDRVLVTVLTKRMAEQLTEFLADHGVK 492

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 493 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 552

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYAD +T S++ AIDET RRR KQ+  N ++ I P+ V ++
Sbjct: 553 RSLIQTIGRAARNVNGKAILYADRVTDSMRRAIDETERRRNKQIAFNLENGITPRGVVKR 612

Query: 729 IMEVIDPILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           I ++ID +   D A   +      A+   +S+K+    LK L KQM   A NL FE+AA+
Sbjct: 613 IRDIIDGVYNVDDARAELKEQQARAKFEDMSEKQLAKELKRLEKQMMEHAKNLEFEKAAQ 672

Query: 786 IRDEIKRLKSSPYFQGLDD 804
            RD++  L+   +   + D
Sbjct: 673 TRDQLALLRQRVFGANVGD 691


>gi|121594498|ref|YP_986394.1| excinuclease ABC subunit B [Acidovorax sp. JS42]
 gi|120606578|gb|ABM42318.1| excinuclease ABC, B subunit [Acidovorax sp. JS42]
          Length = 698

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/660 (54%), Positives = 481/660 (72%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   Y P+GDQP AIA+L++G+   E  Q LLGVTGSGKTFTMA VI  + RPAI+ A
Sbjct: 25  FSLYQPYPPAGDQPEAIAKLVEGVQDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIIFA 84

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR 
Sbjct: 85  PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 144

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+SLLER D ++V++VS IYGIG  ESY +MI+ L++GD + Q++ ++ L++ QY+R 
Sbjct: 145 SCTKSLLERRDVVIVATVSAIYGIGEPESYHRMIMTLRVGDQLSQRDAIAQLIRMQYQRN 204

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RG FRV GD+I++FP+   ++A R+ +F +++E +  F PLTG+  + +    +Y
Sbjct: 205 EQDFSRGKFRVRGDTIDVFPAEHSELAVRIELFDDEVESLQLFDPLTGRIQQKIPRFTVY 264

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR  +  A++ IK+EL  RL     EG+L+EAQRLEQR  +DLEML   G C+
Sbjct: 265 PSSHYVTPRDKVLAAVETIKQELDERLKFFVAEGKLVEAQRLEQRTRFDLEMLSEVGHCK 324

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L+G  PGEPP TL +Y+P D+L+F+DESH  I Q++ MY GD  RK TL EY
Sbjct: 325 GIENYTRHLSGSAPGEPPSTLTDYLPPDALMFLDESHQMIGQLNAMYNGDRARKTTLVEY 384

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATP  +E E   G +V+Q++RPTGLVDP VE
Sbjct: 385 GFRLPSALDNRPLKFEEFEQRMRQVVFVSATPADYEKEHS-GQVVDQVVRPTGLVDPEVE 443

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DV  EI +  Q+  R+L+T LTKRMAE LT+YL +  ++VRY+HS++ T+E
Sbjct: 444 VRPATHQVDDVLQEIRICTQKNQRVLITTLTKRMAEQLTDYLSDNGVKVRYLHSDIDTVE 503

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 504 RVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 563

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ K ILYAD IT S++ AI+ET RRR KQ+ +N+   I P+S+ +++ ++ID +  E 
Sbjct: 564 NLHGKAILYADRITDSMRKAINETERRRAKQIAYNEARGITPRSIVKQVRDLIDGVYSEK 623

Query: 741 AAT------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A         + +  A+   +S+K     +K L K M   A NL FE+AAR+RD++ RLK
Sbjct: 624 AGQEAQRLREDAARQAELEEMSEKDIAREIKRLEKLMLEHARNLEFEQAARVRDQLTRLK 683


>gi|146310929|ref|YP_001176003.1| excinuclease ABC subunit B [Enterobacter sp. 638]
 gi|189037969|sp|A4W8C2|UVRB_ENT38 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|145317805|gb|ABP59952.1| Excinuclease ABC subunit B [Enterobacter sp. 638]
          Length = 673

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/665 (55%), Positives = 474/665 (71%), Gaps = 12/665 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+
Sbjct: 4   MFKLNSAFRPSGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTVANVIADLQRPTMVL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR
Sbjct: 64  APNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R
Sbjct: 124 LSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTNGMIIDQRAILRRLAELQYAR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTG     ++   +
Sbjct: 184 NDQAFQRGTFRVRGEVIDIFPAESDDLALRVELFDEEVERLSLFDPLTGHVDSVIQRFTV 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  AM+ IK EL  R   L +  +LLE QRL QR  +DLEM+   G C
Sbjct: 244 YPKTHYVTPRERIVQAMEDIKVELAERRKVLLENNKLLEEQRLSQRTQFDLEMMNELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL E
Sbjct: 304 SGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP +
Sbjct: 364 YGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGEDVVDQVVRPTGLLDPII 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+
Sbjct: 424 EVRPVGTQVDDLLSEIRARAIINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N K ILY D IT S+  AI ET RRREKQ ++N  + I PQ + +K+++++   L +
Sbjct: 544 RNINGKAILYGDRITASMAKAISETERRREKQHQYNLDNGIVPQGLNKKVVDIL--ALGQ 601

Query: 740 DAATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
             A T           +  D  +L L+ K  +  +  L   M   A NL FEEAA++RD+
Sbjct: 602 GLAKTKAKGRGKSRSPVEADPVELVLTPKALQQKIHELEGLMMQHAQNLEFEEAAQVRDQ 661

Query: 790 IKRLK 794
           + +L+
Sbjct: 662 LHQLR 666


>gi|242239861|ref|YP_002988042.1| excinuclease ABC subunit B [Dickeya dadantii Ech703]
 gi|242131918|gb|ACS86220.1| excinuclease ABC, B subunit [Dickeya dadantii Ech703]
          Length = 670

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/659 (56%), Positives = 480/659 (72%), Gaps = 5/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 5   FKLHSAFQPAGDQPEAIRRLEEGLGDGLAHQTLLGVTGSGKTFTIANVIADLNRPAMILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKSFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTGQ I+ V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGQLIQTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR T+DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEDIKVELAERRQVLLANNKLLEEQRLAQRTTFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GEPPPTLF+Y+P D LL +DESHVTIPQ+ GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRQSGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L P TI VSATPG++ELE+  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGNYELEKSGGDVIDQVVRPTGLLDPELE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   +    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVTTQVDDLLSEIRKRSVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N+N K ILYAD IT S++ A++ET RRREKQ  +N+KH I PQ + +K+ +++    P  
Sbjct: 545 NLNGKAILYADRITPSMERAMNETQRRREKQQAYNEKHGIVPQGLNKKVTDILQIGQPTG 604

Query: 738 LEDAATTNISID--AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +    +  + +  A    LS K  +  ++ L  QM   A NL FEEAAR+RDE+  LK
Sbjct: 605 QKGKGRSKKAAEPAAGYAQLSPKALEQKMRELENQMLAHAQNLEFEEAARLRDELHALK 663


>gi|187478007|ref|YP_786031.1| excinuclease ABC subunit B [Bordetella avium 197N]
 gi|123515216|sp|Q2L244|UVRB_BORA1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|115422593|emb|CAJ49118.1| excinuclease ABC subunit B [Bordetella avium 197N]
          Length = 676

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/665 (55%), Positives = 485/665 (72%), Gaps = 6/665 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y P+GDQPAAI  L++G+      Q LLGVTGSGKTFTMA VI  + RPA+V+A
Sbjct: 14  FQLFQPYAPAGDQPAAIEGLVQGVADGLMYQTLLGVTGSGKTFTMANVIARLGRPALVLA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E ++FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SS+NE I++MR 
Sbjct: 74  PNKTLAAQLYAEMRDFFPKNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSVNEHIEQMRL 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER D I+V +VSCIYGIG+   Y  M++ L+ GD + ++E+L+ LV  QY R 
Sbjct: 134 SATKSLLERRDTIIVGTVSCIYGIGNPGDYHAMVLILRAGDRISRREVLARLVAMQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV G++I+IFP+   ++A R+++F +++E +  F PLTG+  + +    +Y
Sbjct: 194 DADFTRGAFRVRGETIDIFPAESPELALRLTLFDDEVETLELFDPLTGKVRQKLPRFTVY 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR T+  A++ I+EEL+ RL     EG+LLEAQR+EQR  +DLEML+  G C+
Sbjct: 254 PGSHYVTPRETVLRAIETIREELRERLSTFTNEGKLLEAQRIEQRTRFDLEMLQELGFCK 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHVT+ Q+ GMYRGD  RK TL +Y
Sbjct: 314 GIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTVGQLGGMYRGDRARKETLVQY 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATP  +E +     +VEQ++RPTGLVDP VE
Sbjct: 374 GFRLPSALDNRPLRLEEFEARMRQCVFVSATPADYERQHADN-VVEQVVRPTGLVDPEVE 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI     +  R+L+T LTKRM+EDLT++L E  +RVRY+HS++ T+E
Sbjct: 433 VRPAHTQVDDLLGEIRHRVARQERVLVTTLTKRMSEDLTDFLAEHGVRVRYLHSDIDTVE 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 493 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++   ILYAD IT S++ A+DET+RRR KQL+HN  H I  + V + + E+ID ++   
Sbjct: 553 NLHGHAILYADRITDSMRRAMDETSRRRSKQLQHNADHGITARGVNKAVRELIDGVMA-- 610

Query: 741 AATTNISI-DAQQL-SLSKKKGKA-HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            ATT+ ++ DA  L +L+ +K  A  +K L K M   A NL FE+AA  RD +  LK+  
Sbjct: 611 PATTHDALEDAVPLAALTDEKAMAREIKRLEKLMMDHARNLEFEQAAAARDALTALKNRL 670

Query: 798 YFQGL 802
              G+
Sbjct: 671 LLDGV 675


>gi|323701478|ref|ZP_08113151.1| excinuclease ABC, B subunit [Desulfotomaculum nigrificans DSM 574]
 gi|323533487|gb|EGB23353.1| excinuclease ABC, B subunit [Desulfotomaculum nigrificans DSM 574]
          Length = 672

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/654 (54%), Positives = 475/654 (72%), Gaps = 2/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++++ P GDQP AI +L++G+H   K Q LLG TG+GKTFTMA +I+  QRP +++A
Sbjct: 3   FKLRSEFQPRGDQPRAIRELVQGLHQGYKHQTLLGATGTGKTFTMANIIQQTQRPTLILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL SEFK FFP N VEYFVSY+DYYQPEAY+P TDTYIEK+SSIN++ID++RH
Sbjct: 63  PNKTLAAQLCSEFKEFFPENCVEYFVSYFDYYQPEAYIPHTDTYIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LLER D I+V+SVSCIYG+G+ E+Y  +++ L++G   ++  +L  LV  QY+R 
Sbjct: 123 AATTALLERRDVIIVASVSCIYGLGNPETYRDLVLSLRVGGVYDRDAILRKLVDIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD IEIFP+   D A RV MFG+++E + E   LTG+ +   + I ++
Sbjct: 183 DLNFTRGKFRVRGDVIEIFPASATDRALRVEMFGDEVERLLEIDVLTGEILGQRQHIAVF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I+ EL+ RL EL + G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 243 PASHFVTEEENMKRAIANIELELEQRLQELRQNGKLLEAQRLEQRTRYDLEMMAEVGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGE P TL ++ PED LL +DESHV +PQI GMY GD  RK TL E+
Sbjct: 303 GIENYSRHLTGRAPGEAPYTLLDFFPEDWLLIIDESHVAVPQIGGMYEGDRSRKTTLVEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+       I VSATPG++ELE     +VEQIIRPTGLVDP + 
Sbjct: 363 GFRLPSALDNRPLKFAEFESKVNQVIYVSATPGNYELEHSSQ-VVEQIIRPTGLVDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+  EI L  ++  RIL+T LTK+MAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 422 VRPTRGQIDDLLGEIRLRVERDERILVTTLTKKMAEDLTDYLKEHGIRVRYLHSDINTIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS+ SLIQTIGRAAR
Sbjct: 482 RMEILRDLRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD +T S++ AI ET RRR+ Q+ +N+KH I PQ+V++ + +VI+     +
Sbjct: 542 NAEGKVIMYADKMTDSMKKAIGETERRRQIQMAYNQKHGITPQTVRKAVRDVIEATRAAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                ++   +   ++K   K  +  L K+M  +A +L FE AA++RD I  L+
Sbjct: 602 EKAPYVA-KTKAGKMTKTDIKKMIAKLEKEMKESAKHLEFERAAQLRDAIIELR 654


>gi|91782672|ref|YP_557878.1| excinuclease ABC subunit B [Burkholderia xenovorans LB400]
 gi|91686626|gb|ABE29826.1| Excinuclease ABC subunit B [Burkholderia xenovorans LB400]
          Length = 701

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/679 (53%), Positives = 487/679 (71%), Gaps = 8/679 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK ++F    FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  
Sbjct: 18  DESKFVSFEGSPFQLYQPYPPAGDQPTAIDTLVEGVEDGLAFQTLLGVTGSGKTFTMANT 77

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 78  IARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 137

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR SAT+SL+ER D ++V++VS IYGIG+   Y +MI+ L+ GD + Q+++
Sbjct: 138 SSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHRMILTLRTGDKLGQRDI 197

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +    RG+FRV GD+I+IFP+   ++A RV +F +++E +  F PLTG
Sbjct: 198 IARLIAMQYNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTG 257

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y +SHYVTPR T+  A++ IK EL+ RL      G+L+EAQRLEQR  +
Sbjct: 258 RVRQKIPRFTVYPSSHYVTPRDTVVRAVETIKTELRERLEFFYAGGKLVEAQRLEQRTRF 317

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C+ IENYSR+ +G  PGEPPPTL +Y+P D+++ +DESHV I Q++GMY 
Sbjct: 318 DLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAIMMLDESHVLIGQLNGMYN 377

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G + EQ+
Sbjct: 378 GDRARKENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-QKTAGQVAEQL 436

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP +E+R AR+QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++
Sbjct: 437 VRPTGLVDPEIEVRPARSQVDDVLGEINERVKVGDRVLVTVLTKRMAEQLTEFLADHGVK 496

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++
Sbjct: 497 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAE 556

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN K ILYAD +T S++ AIDET RRR KQ+  N ++ I P+ V ++
Sbjct: 557 RSLIQTIGRAARNVNGKAILYADRVTDSMRRAIDETERRRNKQIAFNLENGITPRGVVKR 616

Query: 729 IMEVIDPILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           I ++ID +   D A   +      A+   +S+K+    LK L KQM   A NL FE+AA+
Sbjct: 617 IRDIIDGVYNVDDARAELKEQQARAKFEDMSEKQLARELKRLEKQMMEHAKNLEFEKAAQ 676

Query: 786 IRDEIKRLKSSPYFQGLDD 804
            RD++  L+   +   + D
Sbjct: 677 TRDQLALLRQRVFGANVGD 695


>gi|297618025|ref|YP_003703184.1| excinuclease ABC subunit B [Syntrophothermus lipocalidus DSM 12680]
 gi|297145862|gb|ADI02619.1| excinuclease ABC, B subunit [Syntrophothermus lipocalidus DSM
           12680]
          Length = 667

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/656 (55%), Positives = 474/656 (72%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++++Y P+GDQP AI  +++G+    + Q L+GVTGSGKTFTMA +I  +QRPA+V+A
Sbjct: 3   FKLRSEYKPTGDQPQAIKAIVEGVRRGYRHQTLMGVTGSGKTFTMAHIINELQRPALVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LA QLY+EF+ FFP NAVEYF+SYYDYYQPEAYVP+TDTYIEK+SSIN++ID++RH
Sbjct: 63  PNKTLAGQLYAEFREFFPENAVEYFISYYDYYQPEAYVPQTDTYIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D I+V+SVSCIYG+GS E Y +M++ L+ G    + ELL  LV+  Y+R 
Sbjct: 123 SATAALLERRDVIIVASVSCIYGLGSPEDYGEMVISLRPGMETGRDELLKRLVENLYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I   RG FRV GD +E+ P    + A R+  FG++IE I EF PLTG+ +     + I+
Sbjct: 183 EIDFSRGKFRVRGDVVELMPVSAGENAIRIEFFGDEIERILEFNPLTGEILGRRTHVSIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+T R  +  A   I++EL+ R+  L+KEG+LLEAQRL  R  YDLEM+   G C+
Sbjct: 243 PASHYITTREKMLRAAAEIEKELEERVELLKKEGKLLEAQRLAHRTRYDLEMIREIGYCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+TGR PGEPP TL ++ P D ++F+DESH+ IPQ+ GMY GD  RK TL +Y
Sbjct: 303 GIENYSRYITGRQPGEPPYTLIDFFPRDFIVFIDESHIGIPQLRGMYEGDRSRKQTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL FEE+       I VSATPG +ELE     +VEQIIRPTGLVDP VE
Sbjct: 363 GFRLPSAMDNRPLTFEEFEAKVKQCIYVSATPGPYELENSSQ-VVEQIIRPTGLVDPEVE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI L   +G R+L+T LTKRMAE+LT+YL +   RVRYMHSE+  LE
Sbjct: 422 VRPTQNQIDDLMKEIRLKVDKGYRVLVTTLTKRMAEELTDYLSDAGFRVRYMHSEIDALE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 482 RMDILRGLRLGEFDVLVGINLLREGLDLPEVALVAILDADKEGFLRSERSLVQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  KVI+YAD +T +++ AIDET RRR  QLE+N +H I P++V + I   I+  + E+
Sbjct: 542 NVEGKVIMYADHVTSAMKAAIDETNRRRAIQLEYNHQHGITPRTVTKSIRPPIEATIAEE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 S       L+ ++ K  L  L  +M  AA+ L FE AA +RD I++ + +
Sbjct: 602 PEEYRSSTFE---GLNARERKRLLTELELEMRRAAEMLEFERAAYLRDLIRQAEGT 654


>gi|212712173|ref|ZP_03320301.1| hypothetical protein PROVALCAL_03255 [Providencia alcalifaciens DSM
           30120]
 gi|212685220|gb|EEB44748.1| hypothetical protein PROVALCAL_03255 [Providencia alcalifaciens DSM
           30120]
          Length = 672

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/674 (55%), Positives = 476/674 (70%), Gaps = 22/674 (3%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           SKD   F++ +D+ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI    R
Sbjct: 2   SKD---FKLYSDFQPAGDQPEAIRKLREGLEDGLAHQTLLGVTGSGKTFTIANVIAQENR 58

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P ++MA NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE 
Sbjct: 59  PTMLMAHNKTLAAQLYSEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEH 118

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT++LLER D IVV+SVS IYG+G  +SY +M++ L  G  ++Q+ +L  L  
Sbjct: 119 IEQMRLSATKALLERRDVIVVASVSAIYGLGDPDSYLKMMLHLTDGMIIDQRSILRRLAD 178

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTG     V
Sbjct: 179 LQYTRNDQAFTRGTFRVRGEVIDIFPAESDEYALRVELFDEEVERLSLFDPLTGAIQHRV 238

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               +Y  +HYVTPR  +  AM+ IK EL  R   L +  +LLE QR+ QR  +DLEM+ 
Sbjct: 239 PRFTVYPKTHYVTPRERILEAMENIKVELADRRRVLLENNKLLEEQRITQRTQFDLEMMS 298

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI  MY+GD  RK
Sbjct: 299 ELGYCSGIENYSRYLSGRAPGEPPPTLFDYLPADGLLVVDESHVTIPQIGAMYKGDRSRK 358

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL EYGFRLPS +DNRP+RFEE+  L P TI VSATPG++EL++    ++EQ++RPTGL
Sbjct: 359 ETLVEYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGNYELDKSGQEVIEQVVRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+R   TQV+D+  EI +  Q+  R+L+T LTKRMAEDLTEYL E   RVRY+HS
Sbjct: 419 LDPLIEVRPVATQVDDLLSEIRIRVQKQERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 479 DIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN+N K ILY D IT S+  AI ET RRR KQ+  N+ H I PQ + +K+ +++ 
Sbjct: 539 IGRAARNLNGKAILYGDRITNSMGKAIAETERRRAKQMAFNEAHGIIPQGLNKKVGDILQ 598

Query: 735 PIL-------------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
                           ++D +  N+       S+S K+ +  +  L  QM+  A +L FE
Sbjct: 599 IGHKVGGKGKGRSKESIKDESALNVQ------SMSTKELEQRISQLESQMYKHAQDLEFE 652

Query: 782 EAARIRDEIKRLKS 795
            AAR+RDE++ L++
Sbjct: 653 AAARVRDELQILRN 666


>gi|91788049|ref|YP_549001.1| excinuclease ABC subunit B [Polaromonas sp. JS666]
 gi|91697274|gb|ABE44103.1| Excinuclease ABC subunit B [Polaromonas sp. JS666]
          Length = 706

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/661 (55%), Positives = 480/661 (72%), Gaps = 4/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQP AIAQL++G++  E  Q LLGVTGSGKTFTMA VI  + RPAIV A
Sbjct: 28  FELFMPYPPAGDQPTAIAQLVEGVNDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIVFA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR 
Sbjct: 88  PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S+LER D I+V +VS IYGIG+ E Y+QM    + GD + Q+++++ L++ QY R 
Sbjct: 148 SATKSVLERRDTIIVGTVSAIYGIGAPEDYTQMRFIARTGDKMGQRDVIARLIRMQYTRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RGTFRV GD I+IFP+   ++A R+ +F ++IE +  F PLTG+  + V    +Y
Sbjct: 208 EQDFARGTFRVRGDVIDIFPAEHSELAIRIELFDDEIESLQLFDPLTGRIRQKVPRFVVY 267

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  +  A++ IK EL  R+ +   +G+L+EAQR+EQR  +DLEML   G C+
Sbjct: 268 PKSHYVTPRDKVMAAVETIKLELSERVGQFVADGKLVEAQRIEQRTRFDLEMLSEIGHCK 327

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L+G  PG  P TL +Y+P+D+++F+DESHV I Q++ MY GD  RK TL EY
Sbjct: 328 GIENYTRHLSGSAPGSAPSTLCDYLPKDAVMFLDESHVMIGQLNAMYNGDRARKTTLVEY 387

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       I VSATP ++E E   G +VEQ++RPTGLVDP VE
Sbjct: 388 GFRLPSALDNRPLKFDEFEAKMRQAIFVSATPAAYEQEHA-GQVVEQVVRPTGLVDPQVE 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DV  EI +   +  R+L+T LTKRMAE LT+YL +  ++VRY+HS+V T+E
Sbjct: 447 VRPATHQVDDVLQEIRIRVDRNERVLITTLTKRMAEQLTDYLGDNGVKVRYLHSDVDTVE 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 507 RVEILRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD IT S++ A+DET RRR KQ+  N +H I P+S+ ++I ++ID +  E 
Sbjct: 567 NLNGRAILYADRITDSMKKAMDETERRRNKQIAFNLEHGITPRSIVKRIKDLIDGVYSEK 626

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +      ++ Q+     +S+K     +K L KQM   A NL FE+AARIRD++  LK   
Sbjct: 627 SGKEAEKLEMQKALVEDMSEKDIAREIKRLEKQMVEHARNLEFEKAARIRDQLHTLKEQA 686

Query: 798 Y 798
           +
Sbjct: 687 F 687


>gi|307130551|ref|YP_003882567.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Dickeya dadantii 3937]
 gi|306528080|gb|ADM98010.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Dickeya dadantii 3937]
          Length = 670

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/659 (56%), Positives = 475/659 (72%), Gaps = 5/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHSDFKPAGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ED+A RV +F  ++E +S F PLTG  ++ V    IY
Sbjct: 185 DQAFSRGTFRVRGEIIDIFPAESEDIALRVELFDEEVERLSLFDPLTGHIVQTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR T+DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKVELAERRQVLLAGNKLLEEQRLAQRTTFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVTIPQ+ GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P  I VSATPG++ELE+  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQAIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPELE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVTTQVDDLLSEIRKRAVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD IT S++ A++ET RRREKQ  +N++H I PQ + +KI +++      +
Sbjct: 545 NLNGKAILYADKITPSMERAMNETQRRREKQQAYNEQHGIVPQGLNKKIGDILQIGQSAN 604

Query: 741 AATTNISIDAQQLS-----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                    A + +     LS K     ++ L  QM   A NL FEEAAR+RDEI  L+
Sbjct: 605 GRGKGRGKKAAEPAAHYQQLSPKALDQKIRELESQMLAHAQNLEFEEAARLRDEIHALR 663


>gi|297538628|ref|YP_003674397.1| excinuclease ABC subunit B [Methylotenera sp. 301]
 gi|297257975|gb|ADI29820.1| excinuclease ABC, B subunit [Methylotenera sp. 301]
          Length = 682

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/661 (55%), Positives = 477/661 (72%), Gaps = 4/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +Q+   + P+GDQP AI +L +GI    K Q LLGVTGSGKT+TMA VI    RPAIVMA
Sbjct: 14  YQLNQPFPPAGDQPQAIDKLTQGIDDGLKFQTLLGVTGSGKTYTMANVIARTGRPAIVMA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP+N+VEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++MR 
Sbjct: 74  PNKTLAAQLYSEFREFFPNNSVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQMRL 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYGIG    Y  M++ L+ G+ + Q+++++ LV  QY R 
Sbjct: 134 SATKALLEREDSIIVATVSAIYGIGDPTDYHGMVLHLQQGEKIPQRDMIARLVGMQYDRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RGTFRV GD I++FP+   + A  +SMF ++IE I+ F PLTGQ    +    +Y
Sbjct: 194 EFDFSRGTFRVRGDVIDVFPAENNETAVHISMFDDEIESITLFDPLTGQIFNKIPRYTVY 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T   AM+ IK ELK R+    K G+L+EA R+EQR  +DLEML   G C+
Sbjct: 254 PSSHYVTPRETTIRAMEKIKHELKDRVDFYIKTGKLVEAARIEQRTRFDLEMLNEIGFCK 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G NPG+PPPTL +Y+P+++L+ +DESHVT+PQI  MY+GD  RK  L +Y
Sbjct: 314 GIENYSRHLSGGNPGDPPPTLIDYLPDNALMIIDESHVTVPQIGAMYKGDRSRKENLVDY 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           G+RLPS +DNRPL+FEE+  +    + VSATP  +E    Q  +VE I RPTGLVDP + 
Sbjct: 374 GWRLPSALDNRPLKFEEFERIMRQCVFVSATPSEYEANHQQQ-VVEMIARPTGLVDPQIT 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ A TQV+D+  EI L    G R+L T LTKRM+EDLT+YL E  ++VRY+HS++ T+E
Sbjct: 433 VKPADTQVDDLLGEIKLRVAVGERVLATTLTKRMSEDLTDYLSEHGVKVRYLHSDIDTVE 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQT GRAAR
Sbjct: 493 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTAGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N +VI YA+ IT+S++ A+DET RRR  QL  N+ + I P+ + ++I ++ID +  +D
Sbjct: 553 NLNGQVIFYANKITRSMKAAMDETERRRGVQLAFNEANGIVPKGISKRIKDIIDGVYDKD 612

Query: 741 AATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            A     +    A   SLS+K+    +K L K MH AA NL FE+AA  RD++K+L+   
Sbjct: 613 EAQRERKVLQDQANYESLSEKQIAKEMKRLEKAMHDAAKNLEFEKAADFRDQLKKLRVKF 672

Query: 798 Y 798
           Y
Sbjct: 673 Y 673


>gi|238799260|ref|ZP_04642706.1| UvrABC system protein B [Yersinia mollaretii ATCC 43969]
 gi|238716894|gb|EEQ08764.1| UvrABC system protein B [Yersinia mollaretii ATCC 43969]
          Length = 670

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/659 (55%), Positives = 471/659 (71%), Gaps = 5/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHSEFKPAGDQPDAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F +++E +S F PLTGQ    V    +Y
Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDDEVERLSIFDPLTGQLQHEVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L +  +LLE QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKVELADRRKVLLENNKLLEEQRIAQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+    P TI VSATPG +ELE+  G I+EQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFEASAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLVEHGARVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-----DP 735
           N+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +KI +++       
Sbjct: 545 NLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERGITPQGLNKKIGDLLQLGQPST 604

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                     ++     LSL  K     ++ L  +M+  A NL FE+AA +RD++ +L+
Sbjct: 605 RGKGKGRGGKVADPDNYLSLPPKALDQKIRELEAKMYTYAQNLEFEQAAELRDQVHQLR 663


>gi|322417671|ref|YP_004196894.1| excinuclease ABC subunit B [Geobacter sp. M18]
 gi|320124058|gb|ADW11618.1| excinuclease ABC, B subunit [Geobacter sp. M18]
          Length = 662

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/661 (54%), Positives = 485/661 (73%), Gaps = 3/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ T++   GDQP AI +L +G+   ++ Q+LLGVTGSGKTFTMA+VI    RP +V+A
Sbjct: 4   FELVTEFQARGDQPRAIDELSEGVLRGDRHQVLLGVTGSGKTFTMAQVIARCNRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK  FP+NAVEYFVSYYDYYQPEAY+P +DT+IEK+SSIN++ID+ RH
Sbjct: 64  PNKTLAAQLYGEFKELFPNNAVEYFVSYYDYYQPEAYIPASDTFIEKDSSINDEIDKFRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATRSLL R D ++V+SVSCIYGIGS ESY +M ++++ GD + + ELL  LV+ QY R 
Sbjct: 124 AATRSLLTRRDVVIVASVSCIYGIGSPESYQEMQIRVREGDELGRDELLKRLVEIQYARN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++E+FP+H ++ A R+  +G+ +E IS+  PL G  I+ +    IY
Sbjct: 184 DVDFHRGSFRVRGDTVEVFPAHDDERAIRIEFWGDTVEAISQIDPLRGVLIQRLPRFAIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  R TL  A++ I+ EL+ RL   + +  LLEAQR+EQR  +D+EMLE  G CQ
Sbjct: 244 PASHYVASRQTLERAVEQIRVELEERLRYFKSQNMLLEAQRIEQRTFFDIEMLEQMGFCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GR  GEPP TL +Y P+D +L VDESH+T+ Q+ GMYRGD  RK TL  Y
Sbjct: 304 GIENYSRHFDGRQAGEPPYTLIDYFPDDFMLVVDESHITVSQVGGMYRGDRSRKETLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+      T+ VSATP  +EL+   G++VEQ+IRPTGL+DP +E
Sbjct: 364 GFRLPSALDNRPLTFQEFQKKLNQTVYVSATPADYELKMSSGVVVEQLIRPTGLIDPAIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D+  E  L  ++G R+L+T LTKRMAE+LT+Y  E  IRVRY+HS++ T +
Sbjct: 424 VRPAAGQVDDLLHEARLTVERGERVLVTTLTKRMAEELTDYYRELGIRVRYLHSDIDTFQ 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQT GRAAR
Sbjct: 484 RMEILRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTCGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ +V++YAD +T S+Q AIDET RRRE Q  +N+++ I P+SVK  I  V+     +D
Sbjct: 544 NISGRVLMYADKVTGSMQAAIDETLRRRELQEAYNRENGITPESVKRLIGNVLQSPEEKD 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
             T  + + A++  L+ K+ +  +K L+K+M  AA    FE+AA +RD+I+RL+ +   +
Sbjct: 604 WVT--VPVRAEEF-LNPKELEKTVKRLKKEMLAAAKAQEFEKAAELRDKIRRLEVAEITK 660

Query: 801 G 801
           G
Sbjct: 661 G 661


>gi|237748603|ref|ZP_04579083.1| excinuclease ABC subunit B [Oxalobacter formigenes OXCC13]
 gi|229379965|gb|EEO30056.1| excinuclease ABC subunit B [Oxalobacter formigenes OXCC13]
          Length = 697

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/676 (53%), Positives = 485/676 (71%), Gaps = 8/676 (1%)

Query: 130 SINNHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185
           S     K +TF    FQ+   + PSGDQP AI +L++GI      Q LLGVTGSGKT+TM
Sbjct: 8   SSKKEGKIVTFDNSPFQLYQPFSPSGDQPEAIDKLVEGIEDGLSFQTLLGVTGSGKTYTM 67

Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           A VI  + RPAIV APNK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP+ D +I
Sbjct: 68  ANVIARLGRPAIVFAPNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPQRDLFI 127

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
           EK+S+INE I++MR S T+SL+ER D ++V++VS IYGIG+   Y QMI+ L+  D +  
Sbjct: 128 EKDSAINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTLRERDRIPH 187

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
           +++++ LV+ QY R DI   RGTFRV GD+I++FP+   D A R+ MF ++IE +  F P
Sbjct: 188 RDVIARLVQMQYSRNDIDFSRGTFRVRGDTIDVFPAENADYALRIEMFDDEIESLHFFDP 247

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           LTG+ ++ +    IY  SHYVTPR T+  A++ IK EL  R     + G+ +E QR+EQR
Sbjct: 248 LTGKVLQKIPRFTIYPGSHYVTPRETVLRAIETIKAELIERKDWFRENGKYIEEQRIEQR 307

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
             +DLEM+   G  + IENYSR+LTG  PG+PPPTL +Y+P D+L+F+DESHV I Q++G
Sbjct: 308 TRFDLEMMHELGFTKGIENYSRHLTGMKPGDPPPTLVDYLPSDALMFLDESHVMIGQLNG 367

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MY GD  RK  L +YGFRLPS +DNRPLRF+E+      ++ VSATP ++EL    G +V
Sbjct: 368 MYNGDRSRKTNLVDYGFRLPSALDNRPLRFDEFEGKMRQSVFVSATPANYELTHS-GQVV 426

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           EQ++RPTGLVDP ++++ A TQV+D+  EI+   ++  R+L+T LTKRMAE LT++L E 
Sbjct: 427 EQLVRPTGLVDPVIQVKPASTQVDDLLAEIHDRVEKSERVLVTTLTKRMAEQLTDFLSEN 486

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RVRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFL
Sbjct: 487 GVRVRYLHSDIDTVERVEIVRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFL 546

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS+ SLIQTIGRAARN+N   ILYAD +T S++ AIDET RRR KQL +NK+HNI P+ +
Sbjct: 547 RSERSLIQTIGRAARNLNGTAILYADKMTDSMKKAIDETERRRAKQLAYNKEHNITPEGI 606

Query: 726 KEKIMEVIDPILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
            ++I ++ID +     +   + +    AQ   +S+K+    +K L KQM   A NL FE+
Sbjct: 607 IKEIRDLIDGVFHPQDSLQELQVADDQAQYDVMSEKQLGKEIKKLEKQMQDYAKNLEFEK 666

Query: 783 AARIRDEIKRLKSSPY 798
           AA+ RD++  L+   +
Sbjct: 667 AAQTRDQLHLLRERAF 682


>gi|56414100|ref|YP_151175.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197363022|ref|YP_002142659.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81821420|sp|Q5PG52|UVRB_SALPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238689931|sp|B5BC27|UVRB_SALPK RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56128357|gb|AAV77863.1| excision nuclease ABC subunit B [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094499|emb|CAR60018.1| excision nuclease ABC subunit B [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 673

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/669 (56%), Positives = 477/669 (71%), Gaps = 22/669 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++       
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL------- 597

Query: 741 AATTNISIDAQ---------------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           A   NI+                   +L ++ K  +  +  L  QM   A NL FEEAA+
Sbjct: 598 ALGQNIAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQ 657

Query: 786 IRDEIKRLK 794
           IRD++ +L+
Sbjct: 658 IRDQLHQLR 666


>gi|222110830|ref|YP_002553094.1| excinuclease ABC subunit b [Acidovorax ebreus TPSY]
 gi|221730274|gb|ACM33094.1| excinuclease ABC, B subunit [Acidovorax ebreus TPSY]
          Length = 698

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/660 (54%), Positives = 480/660 (72%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   Y P+GDQP AIA+L++G+   E  Q LLGVTGSGKTFTMA VI  + RPAI+ A
Sbjct: 25  FSLYQPYPPAGDQPEAIAKLVEGVQDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIIFA 84

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR 
Sbjct: 85  PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 144

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+SLLER D ++V++VS IYGIG  ESY +MI+ L++GD + Q++ ++ L++ QY+R 
Sbjct: 145 SCTKSLLERRDVVIVATVSAIYGIGEPESYHRMIMTLRVGDQLSQRDAIAQLIRMQYQRN 204

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RG FRV GD+I++FP+   ++A R+ +F +++E +  F PLTG+  + +    +Y
Sbjct: 205 EQDFSRGKFRVRGDTIDVFPAEHSELAVRIELFDDEVESLQLFDPLTGRIQQKIPRFTVY 264

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR  +  A++ IK+EL  RL     EG+L+EAQRLEQR  +DLEML   G C+
Sbjct: 265 PSSHYVTPRDKVLAAVETIKQELDERLKFFVAEGKLVEAQRLEQRTRFDLEMLSEVGHCK 324

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L+G  PGEPP TL +Y+P D+L+F+DESH  I Q++ MY GD  RK TL EY
Sbjct: 325 GIENYTRHLSGSAPGEPPSTLTDYLPPDALMFLDESHQMIGQLNAMYNGDRARKTTLVEY 384

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATP  +E E   G +V+Q++RPTGLVDP VE
Sbjct: 385 GFRLPSALDNRPLKFEEFEQRMRQVVFVSATPADYEKEHS-GQVVDQVVRPTGLVDPEVE 443

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DV  EI +  Q+  R+L+T LTKRMAE LT+YL +  ++VRY+HS++ T+E
Sbjct: 444 VRPATHQVDDVLQEIRICTQKNQRVLITTLTKRMAEQLTDYLSDNGVKVRYLHSDIDTVE 503

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 504 RVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 563

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ K ILYAD IT S++ AI ET RRR KQ+ +N+   I P+S+ +++ ++ID +  E 
Sbjct: 564 NLHGKAILYADRITDSMRKAISETERRRAKQIAYNEARGITPRSIVKQVRDLIDGVYSEK 623

Query: 741 AAT------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A         + +  A+   +S+K     +K L K M   A NL FE+AAR+RD++ RLK
Sbjct: 624 AGQEAQRLREDAARQAELEEMSEKDIAREIKRLEKLMLEHARNLEFEQAARVRDQLTRLK 683


>gi|114563341|ref|YP_750854.1| excinuclease ABC subunit B [Shewanella frigidimarina NCIMB 400]
 gi|114334634|gb|ABI72016.1| Excinuclease ABC subunit B [Shewanella frigidimarina NCIMB 400]
          Length = 673

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/669 (54%), Positives = 480/669 (71%), Gaps = 19/669 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F +++ + P+GDQP AI +L+ G+ S    Q LLGVTGSGKT+T+A VI+ M RP I+
Sbjct: 4   SVFSLESKFEPAGDQPTAIKKLVDGLESGVASQTLLGVTGSGKTYTIANVIKQMGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QYK
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYMKMLLHLRQGDFMGQRDILIRLSELQYK 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGT+RV G+ I+IFP+  E  A R+ +F ++IE +SEF PLTGQ  + +    
Sbjct: 184 RNDIELQRGTYRVRGEVIDIFPAESEREAIRIELFDDEIERLSEFDPLTGQINKRIARAT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  A + IKEEL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 IYPKTHYVTPREKILAATEEIKEELRERRQYLLDNNKLIEAQRITERVQYDIEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR+ G+ PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK  L 
Sbjct: 304 CSGIENYSRYLSGRSSGDGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKMNLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL FEE+  L P TI VSATP  +ELE+  G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLMFEEFERLMPQTIFVSATPSLYELEKSTGEIAEQVVRPTGLLDPV 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    QV+D+  EI+       R+L+T LTKRM+EDL+EYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVGIQVDDLLSEIHKRVAVNERVLVTTLTKRMSEDLSEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVL+GINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGRFDVLIGINLLREGLDLPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD IT S+  A+ ET RRREKQ +HN K  I P+ V + I +V+     
Sbjct: 544 ARNVNGKVILYADRITNSMAKAMGETERRREKQHQHNLKLGIVPRGVVKSITDVM----- 598

Query: 739 EDAATTNISIDAQQ-----LSLSKKKGK--------AHLKSLRKQMHLAADNLNFEEAAR 785
            D   TN S   ++       +++++ K          +  L KQMH  A NL FE+AA 
Sbjct: 599 -DVGDTNFSKGTRKNHSKFAEVAEERAKYTSIADLSHQIDKLEKQMHEHAKNLEFEQAAA 657

Query: 786 IRDEIKRLK 794
           +RD++K L+
Sbjct: 658 VRDDVKHLR 666


>gi|16759723|ref|NP_455340.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29142504|ref|NP_805846.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213052115|ref|ZP_03344993.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213616344|ref|ZP_03372170.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213647606|ref|ZP_03377659.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213850300|ref|ZP_03381198.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289825272|ref|ZP_06544551.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|20532283|sp|Q8Z889|UVRB_SALTI RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|25300651|pir||AD0597 excision nuclease ABC chain B STY0831 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502016|emb|CAD05246.1| excision nuclease ABC subunit B [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138135|gb|AAO69706.1| excision nuclease ABC subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 673

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/669 (56%), Positives = 478/669 (71%), Gaps = 22/669 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++       
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL------- 597

Query: 741 AATTNISIDAQ---------------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           A   NI+                   +L ++ K  +  +  L +QM   A NL FEEAA+
Sbjct: 598 ALGQNIAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEEQMMQHAQNLEFEEAAQ 657

Query: 786 IRDEIKRLK 794
           IRD++ +L+
Sbjct: 658 IRDQLHQLR 666


>gi|294789333|ref|ZP_06754571.1| excinuclease ABC subunit B [Simonsiella muelleri ATCC 29453]
 gi|294482758|gb|EFG30447.1| excinuclease ABC subunit B [Simonsiella muelleri ATCC 29453]
          Length = 686

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/674 (53%), Positives = 484/674 (71%), Gaps = 16/674 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AI  LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAITGLLEGLSDGLSSQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP N+VEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENSVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ RND I+V++VS IYGIG    Y QMI+ +K GD++ Q++++S+LV  QY+R 
Sbjct: 131 SATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMILSVKEGDTINQRDIISTLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD ++++P+   DVA R+ +F ++IE +  F PL+G   + +    ++
Sbjct: 191 DLDFKRGSFRVRGDVVDVYPAESSDVALRIHLFDDEIERLDLFDPLSGSLHQRIGRFTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR T+  A + IK+EL+ R+    KE R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PGSHYVTPRDTVLRACESIKQELRERIDFYTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P++++LFVDESHVTI QI  MY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPKNAILFVDESHVTIGQIGAMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+  + P TI VSATP ++E E   G IVEQ++RPTGL+DP +E
Sbjct: 371 GFRLPSARDNRPLKFEEFERVMPQTIFVSATPAAYEAEHA-GQIVEQVVRPTGLLDPKIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   +QV+D+  EIN+  ++G R+L+T LTKRMAE LT+Y  E  ++VRY+HS++ T+E
Sbjct: 430 IRPVSSQVDDLLSEINIRKEKGERVLVTTLTKRMAEQLTDYYTELGVKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N+++ I P+ + +K+ ++ID +   +
Sbjct: 550 NVNGVAILYADKITDSMKSAIDETERRREKQIKFNEENGIIPKQINKKVKDLIDGVYGAE 609

Query: 741 AATTNISIDAQQLSLSKKKGK---------------AHLKSLRKQMHLAADNLNFEEAAR 785
           +  T +S   ++   +KK+ K                 +  L K+M  AA NL FEEAA 
Sbjct: 610 SEETEVSGSLKKARANKKELKKSAYQAQIHNEEDAIKEIARLEKEMQTAARNLQFEEAAV 669

Query: 786 IRDEIKRLKSSPYF 799
           IRD+I+ +K +  F
Sbjct: 670 IRDKIRNIKENLLF 683


>gi|237730756|ref|ZP_04561237.1| excinuclease ABC subunit B [Citrobacter sp. 30_2]
 gi|226906295|gb|EEH92213.1| excinuclease ABC subunit B [Citrobacter sp. 30_2]
          Length = 673

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/669 (56%), Positives = 475/669 (71%), Gaps = 22/669 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTISRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKVELAERRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDDVVDQVVRPTGLLDPVIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRTRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++       
Sbjct: 545 NINGKAILYGDKITASMAKAIGETERRREKQQLYNEEHGITPQGLNKKVVDIL------- 597

Query: 741 AATTNISI---------------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           A   NI+                +  +L ++ K  +  +  L  QM   A NL FEEAA 
Sbjct: 598 ALGQNIAKTKAKGKGKSRAGAKSEVVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAT 657

Query: 786 IRDEIKRLK 794
           IRD++ +L+
Sbjct: 658 IRDQLHQLR 666


>gi|303257494|ref|ZP_07343506.1| excinuclease ABC subunit B [Burkholderiales bacterium 1_1_47]
 gi|331000242|ref|ZP_08323926.1| excinuclease ABC, B subunit [Parasutterella excrementihominis YIT
           11859]
 gi|302859464|gb|EFL82543.1| excinuclease ABC subunit B [Burkholderiales bacterium 1_1_47]
 gi|329572408|gb|EGG54061.1| excinuclease ABC, B subunit [Parasutterella excrementihominis YIT
           11859]
          Length = 684

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/660 (55%), Positives = 479/660 (72%), Gaps = 3/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   +  +GDQP AI +L++GI      Q LLGVTGSGKT+TMA VI     P ++MA
Sbjct: 11  FELHQPFEAAGDQPQAIKELVEGIEDGLTAQTLLGVTGSGKTYTMANVIARTGLPTLIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E ++FFP+NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR 
Sbjct: 71  PNKTLAAQLYAEMRDFFPNNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA++S+LER D I+V++VS IYGIG  ESY++M + LK+GD +EQ++L+S LV+ QY+R 
Sbjct: 131 SASKSVLERRDVIIVATVSAIYGIGKPESYTEMRLILKVGDKIEQRDLISHLVRIQYERN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD+I++FP+   ++A R+ +F ++IE +  F PLTG+  + V+   IY
Sbjct: 191 DMEFTRGKFRVRGDTIDVFPAEHSEMALRIELFDDEIEAMYFFDPLTGKTRQKVDRFAIY 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S+YVTPR  +  A++ IK+EL+ +  +  + G+LLEAQR+ +R  +DLEML   G C+
Sbjct: 251 PTSNYVTPRNDILRAIEAIKDELRDQETKFIESGKLLEAQRIRERTLFDLEMLHEVGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L G  PGEPPPTL +Y+P+D+L+F DESHV + QI GMYRGD  RK TL  Y
Sbjct: 311 GIENYSRHLAGGLPGEPPPTLIDYLPKDALMFFDESHVLLGQIGGMYRGDSARKETLVTY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRF+E+       I VSATP  +EL      IVEQ++RPTGLVDP VE
Sbjct: 371 GFRLPSAKDNRPLRFDEFESKMRRAIFVSATPADYELNHSSQ-IVEQVVRPTGLVDPEVE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+DV  EI     +G RIL+T LTKRMAEDLT++L +  I+VRY+HS++ T+E
Sbjct: 430 VRPATTQVDDVLGEIKERIPKGQRILITTLTKRMAEDLTDFLQDNGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G FDVL+GINLLREGLDIPE  L+AILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRAGVFDVLIGINLLREGLDIPEVALIAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  K ILYADTIT S++ A+DET RRREKQ  +N  HNI P+SVK++I ++ID +   D
Sbjct: 550 NVEGKAILYADTITDSMRRAMDETARRREKQTAYNVAHNITPKSVKKEIRDIIDGVYKSD 609

Query: 741 AATTNIS-IDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
                   +D Q    +  K+    +K L  +M   A NL FE+A+ +RD++  ++   +
Sbjct: 610 NLENEFGLVDGQDYEKMGPKELAREIKRLENEMFEHAKNLEFEKASEVRDKLASIRKQVF 669


>gi|50121744|ref|YP_050911.1| excinuclease ABC subunit B [Pectobacterium atrosepticum SCRI1043]
 gi|81827077|sp|Q6D3C4|UVRB_ERWCT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|49612270|emb|CAG75720.1| excision nuclease ABC subunit B [Pectobacterium atrosepticum
           SCRI1043]
          Length = 670

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/663 (55%), Positives = 472/663 (71%), Gaps = 11/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +++A
Sbjct: 5   FTLNSDFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMMLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTG  ++ V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHVLQTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +L+E QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEDIKVELADRKKVLLANDKLVEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATP  +ELE+  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPSHYELEKSGGDVIDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI L A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVGTQVDDLLSEIRLRAAINERVLVTTLTKRMAEDLTEYLQEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILY D IT S+  AI ET RRREKQ  +N +H I PQ + +KI +++    L  
Sbjct: 545 NLRGKAILYGDRITASMAKAISETERRREKQEAYNTEHGIVPQGINKKISDILQ---LGQ 601

Query: 741 AATTNISIDAQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           +A        ++ +        ++ K  +  ++ L  +M   A NL FEEAA +RDE++ 
Sbjct: 602 SANKGKGRGNRKAAEPAARYELMTPKALELKIRELESKMLTHAQNLEFEEAAALRDEVQV 661

Query: 793 LKS 795
           L++
Sbjct: 662 LRA 664


>gi|15616157|ref|NP_244462.1| excinuclease ABC subunit B [Bacillus halodurans C-125]
 gi|14195309|sp|Q9K6X9|UVRB_BACHD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|10176219|dbj|BAB07314.1| excinuclease ABC (subunit B) [Bacillus halodurans C-125]
          Length = 660

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/655 (56%), Positives = 473/655 (72%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI QL+ GI+  +K Q LLG TG+GKTFTM+ VI+ + +P +V+A
Sbjct: 5   FELVSQYKPQGDQPNAIRQLVAGINEGKKHQTLLGATGTGKTFTMSNVIQQVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ERND I+V+SVSCIYG+GS E Y +++  L+ G  +E+ +LL  LV  QY R 
Sbjct: 125 SATSALFERNDVIIVASVSCIYGLGSPEEYKELVCSLRTGMEIERNDLLRQLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EIFP+  ++   RV  FG++I+ I+E   LTG+       + I+
Sbjct: 185 DVNFTRGTFRVRGDVVEIFPASRDEQCIRVEFFGDEIDRITEVDALTGEIKGERNHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A K I+ EL+ RL EL   G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKLKRATKSIEAELEERLKELHDRGKLLEAQRLEQRTRYDLEMIHEMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  GE P TL ++ P+D L+ +DESHVTIPQI  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRKAGETPYTLLDFFPDDFLIIIDESHVTIPQIRAMYNGDQARKGVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEHKVHQAVFVSATPGPYELEHTPE-MVEQIIRPTGLLDPVIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+L+T LTK+MAEDLT+YL E  I+VRY+HSEVKTLE
Sbjct: 424 VRPIEGQIDDLIGEINERVAKNERVLVTTLTKKMAEDLTDYLKEVGIKVRYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIR LRLG F+VLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 484 RIEIIRQLRLGTFNVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YAD +TKS+Q+AIDET RRR  Q E+N+KH I P++++++I +VI    +  
Sbjct: 544 NANGYVIMYADRMTKSMQIAIDETKRRRSIQEEYNRKHGITPKTIEKRIPDVIKATAMVA 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                 +  A +  +SKK+ +A ++ +  +M  AA  LNFE AA +RD I  LK+
Sbjct: 604 EDGEEYTSHAPKQKMSKKEREAVIERMEAEMKEAAKTLNFERAAELRDLILELKA 658


>gi|323705119|ref|ZP_08116695.1| excinuclease ABC, B subunit [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535545|gb|EGB25320.1| excinuclease ABC, B subunit [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 661

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 486/655 (74%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI +L +G++   K Q LLGVTGSGKT+TMA +I+ + +P +V+A
Sbjct: 4   FKLVSDYKPTGDQPEAIRKLTEGVNIGLKCQTLLGVTGSGKTYTMANIIKNVNKPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK++SINE+ID++RH
Sbjct: 64  HNKTLAAQLCAEFKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIEKDASINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G  E Y ++++ L+ G   ++ E+L  LV  QY+R 
Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPEDYEELMLSLRPGMIKDRDEILKKLVDIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +RG FRV GD IE+FP+   D A R+ +FG++I+ I+E   LTG+ I     + I+
Sbjct: 184 DINFVRGKFRVRGDVIEVFPASSSDKAIRIELFGDEIDRITEIDVLTGEIIGERSHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T +  L  A++ I++EL+ R  EL+ +G++LEA+RL+QR  YD+EML+  G C 
Sbjct: 244 PASHYATSKEKLKKAIESIEKELEERYKELKDQGKILEAERLKQRTNYDIEMLQEVGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++GR  G PP TL +Y P+D L+F+DESHVTIPQI GMY GD  RK +L ++
Sbjct: 304 GIENYSRHISGRAAGSPPYTLLDYFPDDFLMFIDESHVTIPQIRGMYNGDRARKESLVDF 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+       I VSATPG +ELE  +  +VEQIIRPTGL+DP V 
Sbjct: 364 GFRLPSAFDNRPLKFEEFEERINQLICVSATPGPYELEHSER-VVEQIIRPTGLLDPEVV 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + QV+D+  EI +  ++G R+L+T LTK+MAEDLT+Y  +  ++V+Y+HS+++T+E
Sbjct: 423 VKPVKGQVDDLLSEIKMTVEKGYRVLVTTLTKKMAEDLTDYFRDMGVKVKYLHSDIETIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMEIIRDLRLGKFDVLIGINLLREGLDLPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N + KVI+YAD +T+S++ AI+ET RRR  Q+E+NKKH I P+++ + I +VI+   + E
Sbjct: 543 NADGKVIMYADIVTESMKNAINETNRRRAIQMEYNKKHGITPKTIVKGIRDVIEATKVAE 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           D  T  +    +   + K   +  +  L K+M  AA +L FE+AA++RD I  L+
Sbjct: 603 DKGTYKVK---KAEVIDKVSIEKMISELEKEMKKAAKDLEFEKAAKLRDRIFELQ 654


>gi|160899435|ref|YP_001565017.1| excinuclease ABC subunit B [Delftia acidovorans SPH-1]
 gi|160365019|gb|ABX36632.1| excinuclease ABC, B subunit [Delftia acidovorans SPH-1]
          Length = 712

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/660 (54%), Positives = 485/660 (73%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQPAAI +L++GI   E  Q LLGVTGSGKTFTMA VI  + RPAIV A
Sbjct: 42  FELFQPYPPAGDQPAAIEKLVEGIQDGESFQTLLGVTGSGKTFTMANVIARLGRPAIVFA 101

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP N+VEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR 
Sbjct: 102 PNKTLAAQLYSEFREFFPKNSVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 161

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+SL+ER D ++V++VS IYGIG  ESY +MI+ L+ GD + Q+++++ L++ QY+R 
Sbjct: 162 SCTKSLMERRDVVIVATVSAIYGIGEPESYHRMIMTLRTGDRINQRDVIAQLIRMQYQRN 221

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD+I++FP+   ++A R+ +F +++E +  F PLTG+  +++    +Y
Sbjct: 222 DQDFSRGKFRVRGDTIDVFPAEHSELAIRIELFDDEVESLQLFDPLTGRVRQSIPRFTVY 281

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR  +  A++ IK EL  RL +L  +G+L+EAQRLEQR  +DLEML   G C+
Sbjct: 282 PSSHYVTPRDKVLAAVETIKLELAERLKQLVGDGKLVEAQRLEQRTRFDLEMLTEVGHCK 341

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L+G  PGEPP TL +Y+P D+L+F+DESH  I Q++ MY GD  RK TL EY
Sbjct: 342 GIENYTRHLSGAAPGEPPSTLTDYLPGDALMFLDESHQMIGQLNAMYSGDRSRKTTLVEY 401

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       I VSATP  +E +   G +V+Q++RPTGL+DP +E
Sbjct: 402 GFRLPSALDNRPLKFEEFEQRMRQVIFVSATPADYE-KTHSGQVVDQVVRPTGLIDPEIE 460

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DV  EI L  ++  R+L+T LTKRMAE LT+YL E  ++VRY+HS+V+T+E
Sbjct: 461 VRPATNQVDDVLQEIRLRVERTERVLITTLTKRMAEQLTDYLSENGVKVRYLHSDVETVE 520

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 521 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 580

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ K ILYAD +T+S++ AI ET RRR KQ+  N+++ I P+ + +++ ++ID +  E 
Sbjct: 581 NLHGKAILYADRVTESMKKAIGETERRRAKQISFNEENGIEPKQIVKRVKDLIDGVYSEK 640

Query: 741 AATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +      + A QL       +S+K     +K L KQM   A +L FE+AAR+RD++  LK
Sbjct: 641 SGKEAERLQANQLERARVEDMSEKDVAKEIKRLEKQMLEHARSLEFEQAARVRDQLALLK 700


>gi|121609328|ref|YP_997135.1| excinuclease ABC subunit B [Verminephrobacter eiseniae EF01-2]
 gi|121553968|gb|ABM58117.1| excinuclease ABC, B subunit [Verminephrobacter eiseniae EF01-2]
          Length = 719

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/664 (54%), Positives = 487/664 (73%), Gaps = 7/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   Y P+GDQP AIA+L++G++  E  Q LLGVTGSGKTFTMA VI  M RPAIV A
Sbjct: 47  FALFQPYLPAGDQPEAIAKLVEGLNDGEVFQTLLGVTGSGKTFTMANVIARMGRPAIVFA 106

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR 
Sbjct: 107 PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 166

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+SL+ER D ++V++VS IYGIG  ESY +M++ L+ GD + Q+++++ L++ QY+R 
Sbjct: 167 SCTKSLMERRDVVIVATVSAIYGIGEPESYHRMVMILRGGDKLGQRDVIAQLIRMQYQRN 226

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV G++I++FP+   ++A R+ +F +++  +  F PLTG+  + +    +Y
Sbjct: 227 DADFSRGKFRVRGETIDVFPAEHSELALRIELFDDEVASLQLFDPLTGRVKQKILRFTVY 286

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR  +  A++ IK EL  RL +L+  G+LLEAQRLEQR  +DLEML   G C+
Sbjct: 287 PSSHYVTPRDKVLAAIESIKAELAERLQQLQALGKLLEAQRLEQRTRFDLEMLSEVGHCK 346

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L+G  PG+PP TL +Y+P+D+L+F+DESH  I Q++ MY GD  RK TL +Y
Sbjct: 347 GIENYTRHLSGAAPGDPPSTLTDYLPKDALMFLDESHQMIGQLNAMYSGDRSRKTTLVDY 406

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       I VSATP  +E     G IV+Q++RPTGLVDP V+
Sbjct: 407 GFRLPSALDNRPLKFEEFEQRMRQVIFVSATPADYERIHS-GQIVDQVVRPTGLVDPEVQ 465

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DV  EI + AQ+  R+L+T LTKRMAE LT+YL +  ++VRY+HS++ T+E
Sbjct: 466 VRPATHQVDDVLQEIRIHAQRHERVLITTLTKRMAEQLTDYLADNGVKVRYLHSDIDTVE 525

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SL+QTIGRAAR
Sbjct: 526 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLVQTIGRAAR 585

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD +T+S++ AI ET RRR +QL HN++H I P+S+ +++ ++ID +  E 
Sbjct: 586 NINGRAILYADRMTESMKKAIGETERRRIRQLAHNQRHAITPRSIVKRVRDLIDGVYSEK 645

Query: 741 AATTNISID------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A      ++      A+   +S+K     +K L K+M   A NL FE+AAR+RD++  LK
Sbjct: 646 AGKVAERLEQEAMQRAKTQDMSEKDLAREIKRLEKRMLEHARNLEFEQAARMRDQLAGLK 705

Query: 795 SSPY 798
           S  +
Sbjct: 706 SQVF 709


>gi|16764161|ref|NP_459776.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62179366|ref|YP_215783.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161614965|ref|YP_001588930.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167550526|ref|ZP_02344283.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167992027|ref|ZP_02573125.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168236724|ref|ZP_02661782.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168263705|ref|ZP_02685678.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168466385|ref|ZP_02700247.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168820061|ref|ZP_02832061.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194445085|ref|YP_002040034.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194735904|ref|YP_002113891.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197250972|ref|YP_002145754.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197263555|ref|ZP_03163629.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198242425|ref|YP_002214763.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200390141|ref|ZP_03216752.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205352057|ref|YP_002225858.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207856236|ref|YP_002242887.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224582612|ref|YP_002636410.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238913358|ref|ZP_04657195.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|20532285|sp|Q8ZQQ4|UVRB_SALTY RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|81309740|sp|Q57RF9|UVRB_SALCH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189037997|sp|A9MTI2|UVRB_SALPB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226698337|sp|B5F076|UVRB_SALA4 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226698338|sp|B5FP65|UVRB_SALDC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226698339|sp|B5QX69|UVRB_SALEP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226698340|sp|B5R765|UVRB_SALG2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238693567|sp|B4SZK1|UVRB_SALNS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238693660|sp|B4TQU3|UVRB_SALSV RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|254764908|sp|C0PWY7|UVRB_SALPC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|16419304|gb|AAL19735.1| UvrB with UvrAC is a DNA excision repair enzyme [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|62126999|gb|AAX64702.1| UvrB with UvrAC is a DNA excision repair enzyme [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161364329|gb|ABX68097.1| hypothetical protein SPAB_02719 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403748|gb|ACF63970.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194711406|gb|ACF90627.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195630935|gb|EDX49521.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197214675|gb|ACH52072.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197241810|gb|EDY24430.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197290228|gb|EDY29585.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197936941|gb|ACH74274.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199602586|gb|EDZ01132.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205271838|emb|CAR36672.1| excision nuclease ABC subunit B [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205324631|gb|EDZ12470.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205329601|gb|EDZ16365.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205343219|gb|EDZ29983.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205347694|gb|EDZ34325.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206708039|emb|CAR32329.1| excision nuclease ABC subunit B [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224467139|gb|ACN44969.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261246056|emb|CBG23858.1| excision nuclease ABC subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992538|gb|ACY87423.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157384|emb|CBW16873.1| excision nuclease ABC subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911821|dbj|BAJ35795.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320085070|emb|CBY94857.1| UvrABC system protein B Protein uvrB; Excinuclease ABC subunit B
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321226372|gb|EFX51423.1| Excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322613853|gb|EFY10791.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620352|gb|EFY17219.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622778|gb|EFY19623.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628690|gb|EFY25477.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631628|gb|EFY28384.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637154|gb|EFY33857.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322641646|gb|EFY38282.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322648027|gb|EFY44497.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648491|gb|EFY44943.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654228|gb|EFY50551.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658143|gb|EFY54410.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663617|gb|EFY59819.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322670353|gb|EFY66493.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671589|gb|EFY67711.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676945|gb|EFY73012.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682870|gb|EFY78889.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686549|gb|EFY82531.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322713837|gb|EFZ05408.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323129106|gb|ADX16536.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323194554|gb|EFZ79747.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199115|gb|EFZ84211.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202071|gb|EFZ87130.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208904|gb|EFZ93841.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323213457|gb|EFZ98251.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215259|gb|EGA00005.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220821|gb|EGA05259.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227121|gb|EGA11299.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229937|gb|EGA14060.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233162|gb|EGA17258.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240897|gb|EGA24939.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243214|gb|EGA27234.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248753|gb|EGA32681.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251757|gb|EGA35624.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323258751|gb|EGA42408.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260704|gb|EGA44309.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267860|gb|EGA51339.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268756|gb|EGA52216.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326622518|gb|EGE28863.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326627099|gb|EGE33442.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332987729|gb|AEF06712.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 673

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/669 (56%), Positives = 477/669 (71%), Gaps = 22/669 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++       
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL------- 597

Query: 741 AATTNISIDAQ---------------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           A   NI+                   +L ++ K  +  +  L  QM   A NL FEEAA+
Sbjct: 598 ALGQNIAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQ 657

Query: 786 IRDEIKRLK 794
           IRD++ +L+
Sbjct: 658 IRDQLHQLR 666


>gi|219670731|ref|YP_002461166.1| excinuclease ABC subunit B [Desulfitobacterium hafniense DCB-2]
 gi|219540991|gb|ACL22730.1| excinuclease ABC, B subunit [Desulfitobacterium hafniense DCB-2]
          Length = 683

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/656 (55%), Positives = 475/656 (72%), Gaps = 9/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  Y PSGDQP AI  L++ IHS  + Q LLGVTGSGKTFTMA +IE +QRP +++A
Sbjct: 3   FRLRAPYKPSGDQPQAIDALVESIHSGRRHQTLLGVTGSGKTFTMANIIEKVQRPTLILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID+MRH
Sbjct: 63  HNKTLAAQLYTEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IVV+SVSCIYG+GS E Y  ++V L+ G  +++ ++L  L+  QY R 
Sbjct: 123 SATAALFERRDVIVVASVSCIYGLGSPEEYRDLMVSLRQGQEIDRNDILKKLISIQYDRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +E+ P+   + A R+ MFG++IE I E   LTG+ +     + I+
Sbjct: 183 DLAFERGTFRVRGDVVEVHPAGSSEHAVRIEMFGDEIEHIYEINVLTGEILGERRHVSIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHYVT R  +  A + I++EL+ +L   + E +LLEAQRLEQR  YDLEML   G C 
Sbjct: 243 PNSHYVTARDKVLVAAENIEKELEEQLRRFKDEDKLLEAQRLEQRTRYDLEMLREMGFCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+LT R  GE P TL  + PED L+ +DESHVT+PQ+ GMY GD  RK TL +Y
Sbjct: 303 GVENYSRHLTFREAGETPYTLLHFFPEDYLMMIDESHVTLPQVRGMYEGDRSRKTTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L P  + +SATPG +ELE C   IVEQIIRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLKFAEFETLVPQRVYISATPGPYELEHCPQ-IVEQIIRPTGLLDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +  R+L+T LTK+MAEDLT+YL   N+ V+Y+HS++ TLE
Sbjct: 422 VRPTKGQIDDLIGEINQRIARDERVLVTTLTKKMAEDLTDYLKNLNMAVKYLHSDITTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+R+LRLG  DV+VGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 482 RVEILRELRLGDIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N   KVI+YAD +T+S+++AI ET RRR  Q  +N+KH I PQ++++KI E+ +   + E
Sbjct: 542 NAQGKVIMYADQMTRSMEVAIGETNRRRAIQEAYNEKHGITPQTIRKKIYEIPEATKVAE 601

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             A     + A++L+         LKSL ++M LAA +++FE AA IRD +  LK 
Sbjct: 602 KKAAYGSKMPAEELA-------ELLKSLEQEMRLAAKDMDFERAAEIRDAMIELKG 650


>gi|269102202|ref|ZP_06154899.1| excinuclease ABC subunit B [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162100|gb|EEZ40596.1| excinuclease ABC subunit B [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 675

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/666 (54%), Positives = 483/666 (72%), Gaps = 14/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +++ PSGDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   +RP + +A
Sbjct: 5   FSIASEFSPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTIANVIAEAKRPTLFLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D I+++SVS IYG+G  +SY +M++ ++ GD ++Q+++L  L + QY R 
Sbjct: 125 SATKALMERRDVIIIASVSAIYGLGDPDSYLKMMLHVRRGDMLDQRDILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIKI 379
           D+   RGTFRV G+ I+IFP+  E  A R+ +F ++++ IS F PLTG  I+ ++    +
Sbjct: 185 DMAFERGTFRVRGEVIDIFPAESEKEAVRIELFDDEVDRISLFDPLTGSVIQQDLPRYTV 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL+ R  +     +L+E QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPREKILEAIEGIKVELESRRKQFMDGNKLVEEQRITQRTQFDVEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+ QI  M+RGD  RK  L E
Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPADGLLIIDESHVTVSQIGAMFRGDRSRKENLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+FEE+  L P TI VSATPG +E+E+  G I EQ++RPTGL+DP +
Sbjct: 365 YGFRLPSALDNRPLKFEEFESLAPQTIYVSATPGKYEIEKSDGEIAEQVVRPTGLLDPEI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL E  +RVRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAEDLTEYLAEHGVRVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K ILY D IT S++ AI ET RRR+KQ  +N++H I PQ + +K+ ++++  L  
Sbjct: 545 RNLEGKAILYGDKITGSMERAITETERRRDKQKLYNEQHGITPQKLNKKVADILE--LGS 602

Query: 740 DAATTNISIDAQQL-SLSKKKG----------KAHLKSLRKQMHLAADNLNFEEAARIRD 788
            +        A QL  +++KKG          +  ++ L KQM+  A NL FE+AA +RD
Sbjct: 603 SSPKAKAHNRAAQLHKVAEKKGTYSAMSPQQLEGEIQQLEKQMYDFAQNLEFEKAAELRD 662

Query: 789 EIKRLK 794
           +I  L+
Sbjct: 663 KIHTLR 668


>gi|241763771|ref|ZP_04761818.1| excinuclease ABC, B subunit [Acidovorax delafieldii 2AN]
 gi|241366990|gb|EER61386.1| excinuclease ABC, B subunit [Acidovorax delafieldii 2AN]
          Length = 696

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/671 (54%), Positives = 485/671 (72%), Gaps = 7/671 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQP AI +L++G+   E  Q LLGVTGSGKTFTMA VI  M RPAIV A
Sbjct: 24  FELFQPYPPAGDQPEAIDKLVEGLRDGETFQTLLGVTGSGKTFTMANVIARMGRPAIVFA 83

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR 
Sbjct: 84  PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 143

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+SL+ER D ++V++VS IYGIG  ESY +M++ L++GD + Q+++++ L++ QY+R 
Sbjct: 144 SCTKSLMERRDVVIVATVSAIYGIGEPESYHRMVMTLRVGDQLGQRDVIAQLIRMQYQRN 203

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RG FRV GD+I++FP+   ++A R+ +F ++IE +  F PLTG+  + +    +Y
Sbjct: 204 EADFSRGKFRVRGDTIDVFPAEHSELAIRIELFDDEIESLQLFDPLTGRVKQKIPRFTVY 263

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR  +  A++ IK EL  RL +L  EG+L+EAQRLEQR  +DLEML   G C+
Sbjct: 264 PSSHYVTPRDKVLAAVETIKIELAERLQQLLAEGKLVEAQRLEQRTRFDLEMLSEVGHCK 323

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L+G  PG+PP TL +Y+P+DS++F+DESH  I Q+S MY GD  RK TL EY
Sbjct: 324 GIENYTRHLSGSAPGDPPSTLTDYMPKDSIMFLDESHQMIGQLSAMYNGDRARKTTLVEY 383

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       I VSATP  +E     G +V+Q++RPTGLVDP VE
Sbjct: 384 GFRLPSALDNRPLKFEEFEQRMRQVIFVSATPADYEKTHA-GQVVDQVVRPTGLVDPVVE 442

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DV  EI +  ++  R+L+T LTKRMAE LT+YL +  ++VRY+HS+V T+E
Sbjct: 443 VRPAMHQVDDVLQEIRIRVEKHERVLITTLTKRMAEQLTDYLTDNGVKVRYLHSDVDTVE 502

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 503 RVEIIRDLRLGSFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 562

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N   ILYAD IT+S++ A+ ET RRR KQ+ +N+ H I P+S+ +++ ++ID +  E 
Sbjct: 563 NQNGHAILYADRITESMKKAMGETERRRLKQIAYNEAHGITPRSIVKRVRDLIDGVYSEK 622

Query: 741 AATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A      ++ + L       +S+K     +K L K M   A NL FE+AA++RD++ RLK
Sbjct: 623 AGKDAERLEQEALQRAKVEDMSEKDVAREIKRLEKLMLEHARNLEFEQAAQVRDQLTRLK 682

Query: 795 SSPYFQGLDDS 805
              +     DS
Sbjct: 683 DRAFGAHGSDS 693


>gi|89897604|ref|YP_521091.1| excinuclease ABC subunit B [Desulfitobacterium hafniense Y51]
 gi|89337052|dbj|BAE86647.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 686

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/656 (55%), Positives = 475/656 (72%), Gaps = 9/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  Y PSGDQP AI  L++ IHS  + Q LLGVTGSGKTFTMA +IE +QRP +++A
Sbjct: 7   FRLRAPYKPSGDQPQAIDALVESIHSGRRHQTLLGVTGSGKTFTMANIIEKVQRPTLILA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID+MRH
Sbjct: 67  HNKTLAAQLYTEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKMRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IVV+SVSCIYG+GS E Y  ++V L+ G  +++ ++L  L+  QY R 
Sbjct: 127 SATAALFERRDVIVVASVSCIYGLGSPEEYRDLMVSLRQGQEIDRNDILKKLISIQYDRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +E+ P+   + A R+ MFG++IE I E   LTG+ +     + I+
Sbjct: 187 DLAFERGTFRVRGDVVEVHPAGSSEHAVRIEMFGDEIEHIYEINVLTGEILGERRHVSIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHYVT R  +  A + I++EL+ +L   + E +LLEAQRLEQR  YDLEML   G C 
Sbjct: 247 PNSHYVTARDKVLVAAENIEKELEEQLRRFKDEDKLLEAQRLEQRTRYDLEMLREMGFCN 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+LT R  GE P TL  + PED L+ +DESHVT+PQ+ GMY GD  RK TL +Y
Sbjct: 307 GVENYSRHLTFREAGETPYTLLHFFPEDYLMMIDESHVTLPQVRGMYEGDRSRKTTLVDY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L P  + +SATPG +ELE C   IVEQIIRPTGL+DP + 
Sbjct: 367 GFRLPSALDNRPLKFAEFETLVPQRVYISATPGPYELEHCPQ-IVEQIIRPTGLLDPEIS 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +  R+L+T LTK+MAEDLT+YL   N+ V+Y+HS++ TLE
Sbjct: 426 VRPTKGQIDDLIGEINQRIARDERVLVTTLTKKMAEDLTDYLKNLNMSVKYLHSDITTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+R+LRLG  DV+VGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 486 RVEILRELRLGDIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N   KVI+YAD +T+S+++AI ET RRR  Q  +N+KH I PQ++++KI E+ +   + E
Sbjct: 546 NAQGKVIMYADQMTRSMEVAISETNRRRAIQEAYNEKHGITPQTIRKKIYEIPEATKVAE 605

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             A     + A++L+         LKSL ++M LAA +++FE AA IRD +  LK 
Sbjct: 606 KKAAYGSKMPAEELA-------ELLKSLEQEMRLAAKDMDFERAAEIRDAMIELKG 654


>gi|262193339|ref|YP_003264548.1| excinuclease ABC subunit B [Haliangium ochraceum DSM 14365]
 gi|262076686|gb|ACY12655.1| excinuclease ABC, B subunit [Haliangium ochraceum DSM 14365]
          Length = 672

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/662 (56%), Positives = 484/662 (73%), Gaps = 6/662 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ + + P+GDQP AI QL++G+   ++ Q+LLG+TGSGKTF++A VI    RPA+++
Sbjct: 5   LFEIVSPFTPTGDQPEAIRQLIEGLGRGDRHQVLLGITGSGKTFSVANVIAETGRPALII 64

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNKILAAQLY EFK  FP +AV YFVSYYDYYQPEAYVP TDTYIEK+S INE+IDRMR
Sbjct: 65  APNKILAAQLYGEFKELFPKHAVHYFVSYYDYYQPEAYVPTTDTYIEKDSLINEEIDRMR 124

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT +LL R D I+V+SVSCIYGIG+ E Y+ M   ++ G  V + ++L  LV+ QY+R
Sbjct: 125 HAATYALLSRQDVIIVASVSCIYGIGAREMYASMTCDIESGTEVARDDVLRRLVELQYER 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+   RGTFRV GD +E+FP++  D A R+  +G+D+E ISE  PL G+  R++  + I
Sbjct: 185 NDVDFHRGTFRVRGDVVEVFPAYEADTAIRIEWWGDDVESISEIDPLRGKVKRSLGHVSI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VTP   L  A++ I+ EL+ RL EL ++ +L+E QRLEQR  YDLE LE  G C
Sbjct: 245 FPASHFVTPSDQLRRAIEGIRVELRERLEELSQQNKLVERQRLEQRTMYDLECLEQMGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LTGR+ G PPPTL +Y PE+ +LF+DESH T+PQ+  MYRGD  RK TL +
Sbjct: 305 SGIENYSRHLTGRDSGLPPPTLIDYFPEEFILFIDESHQTVPQLQAMYRGDRSRKQTLVD 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRF+E+N      I +SATP  +ELEQ QG+IVEQIIRPTGL+DP +
Sbjct: 365 FGFRLPSAIDNRPLRFDEFNERARQYIYISATPADYELEQSQGVIVEQIIRPTGLLDPEI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    QV+D+  EI L  ++  R+L+T LTKRMAEDLTEY  + +++VRY+HS+V TL
Sbjct: 425 EVRPVGEQVDDLLSEIRLRIERRERVLVTTLTKRMAEDLTEYYADLDVKVRYLHSDVDTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRRGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV----IDP 735
           RNVN +V+LYAD ITKS++ AIDET RRR  Q E+N+ H I P+S    I+++     D 
Sbjct: 545 RNVNGRVLLYADRITKSMRDAIDETERRRALQGEYNQTHGIVPRSTTRAILDIQPTNADG 604

Query: 736 ILLEDAATTNISIDA-QQLSL-SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
            L     T  +  D   +LS+ +  + +  ++ LR +M  AA  L+FE AA++RD  + L
Sbjct: 605 SLTRAPLTEAVPTDVLDELSVDNAAELRKAIEKLRGEMRAAAAELDFERAAKLRDRAREL 664

Query: 794 KS 795
           +S
Sbjct: 665 ES 666


>gi|204929975|ref|ZP_03220996.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204320969|gb|EDZ06170.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 673

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/669 (56%), Positives = 476/669 (71%), Gaps = 22/669 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++       
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL------- 597

Query: 741 AATTNISIDAQ---------------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           A   NI                    +L ++ K  +  +  L  QM   A NL FEEAA+
Sbjct: 598 ALGQNIVKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQ 657

Query: 786 IRDEIKRLK 794
           IRD++ +L+
Sbjct: 658 IRDQLHQLR 666


>gi|299136465|ref|ZP_07029648.1| excinuclease ABC, B subunit [Acidobacterium sp. MP5ACTX8]
 gi|298600980|gb|EFI57135.1| excinuclease ABC, B subunit [Acidobacterium sp. MP5ACTX8]
          Length = 663

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/665 (54%), Positives = 482/665 (72%), Gaps = 12/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P+GDQP AI++++ G+++ +K Q+LLGVTGSGKTFTMAKVI+ + RPA+++A
Sbjct: 3   FQLVSDYKPAGDQPRAISEIVSGLNAGDKDQVLLGVTGSGKTFTMAKVIQELNRPALILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAY+P  D YIEKES+IN+++D++R 
Sbjct: 63  HNKTLAAQLYHEFKQFFPNNAVEYFVSYYDYYQPEAYIPAGDLYIEKESTINDELDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D I+VSSVSCIYG+GS E+Y  M++ L+ G  ++++++   LV+  Y+R 
Sbjct: 123 SATRSLFERRDAIIVSSVSCIYGLGSPEAYYGMLLLLEKGQKIKRQDITRRLVEILYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD IE++P++ E+ A+R+ +FG++I+ +S+  PL G   +    + IY
Sbjct: 183 DVDFRRGTFRVRGDVIEVYPTYDEN-AFRIELFGDEIDSLSQIDPLFGTVKQKYSRLPIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV       TA+  I  EL     +LEKEGRL+E+QR+ QR  +DLEM+++ G C 
Sbjct: 242 PKSHYVVAPERKKTAIDNILSELADWEAQLEKEGRLVESQRIHQRTRFDLEMIKSVGFCH 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +GR PGEPPPTL +Y P D L+F+DESHVT+PQ+ GM+ GD  RK  L +Y
Sbjct: 302 GIENYSRHFSGRLPGEPPPTLLDYFPRDFLIFIDESHVTVPQLHGMWHGDRSRKQNLVDY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPLRFEE+       + VSATPG +EL +  G++VEQIIRPTGLVDP VE
Sbjct: 362 GFRLPSAMDNRPLRFEEFETRTGQIVYVSATPGPYELTKSAGVVVEQIIRPTGLVDPQVE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EI   A Q  R+L+T LTKRMAEDL  Y  E  +R RYMHSE++TLE
Sbjct: 422 IRPVKGQIDDLLAEIRDRAAQNQRVLVTTLTKRMAEDLANYYTEVGVRCRYMHSEIETLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI+++RDLR G++DVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 482 RIKLLRDLRKGEYDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSQGSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++  + ILYAD +T S++ AIDET RRREKQ+ +N++H I PQ+V   I + +  +L  D
Sbjct: 542 HLEGRAILYADKMTDSMRRAIDETDRRREKQVAYNEEHGITPQTVIRSINDSLATVLKAD 601

Query: 741 AA------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A       T +   A Q  L       ++  L  +M  AA    FE+AA++RD +K L+
Sbjct: 602 YADLTEEDATGMPDIATQAELD-----TYIAKLETEMREAAKKFEFEKAAKLRDTVKELR 656

Query: 795 SSPYF 799
           +  + 
Sbjct: 657 TKEFL 661


>gi|71065305|ref|YP_264032.1| excinuclease ABC subunit B [Psychrobacter arcticus 273-4]
 gi|71038290|gb|AAZ18598.1| Excinuclease ABC subunit B [Psychrobacter arcticus 273-4]
          Length = 703

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/667 (55%), Positives = 483/667 (72%), Gaps = 18/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M T++ P+GDQP AI +L+ GI+S    QLLLGVTGSGKT+TMAKVI   QRP I+MA
Sbjct: 40  FEMVTEFEPAGDQPQAIKKLVNGINSGMDEQLLLGVTGSGKTYTMAKVISETQRPTIIMA 99

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYV  +DT+IEK+S+IN+ ID+MR 
Sbjct: 100 HNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDSAINDHIDQMRL 159

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVSCIYG+G  ESY +M++ + +GD +++   +  LV+ QY R 
Sbjct: 160 SATRALLERRDAIIVASVSCIYGLGDPESYLKMLLHVVVGDKIDRTATIKRLVEMQYTRN 219

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGT+R+ G+ ++I+P+  E +A RV +F N++E+I+ F PLTG+ +R V  I IY
Sbjct: 220 ELDFGRGTYRLRGELLDIYPAESEQLAVRVHLFDNEVEKITWFDPLTGKTVRTVPRITIY 279

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  L  A   I+ EL+ RL    +  +L+EAQRL++R  YDLEM++  G C 
Sbjct: 280 PKSHYVTPRNKLEAASHTIRAELEPRLEYFRENNKLIEAQRLKERTQYDLEMIQQLGYCN 339

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS++L+GR  GE PPTLF+YIPED+LLF+DESHVT+ QI  MY+GD  RK  L  Y
Sbjct: 340 GIENYSQHLSGRPSGEAPPTLFDYIPEDALLFIDESHVTVSQIGAMYKGDRSRKENLVNY 399

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS M+NRP++FEEW  ++P TI VSATP  +ELE  +  +VEQ++RPTGL+DP +E
Sbjct: 400 GFRLPSAMNNRPMKFEEWERIKPKTIYVSATPALYELEHSEQ-VVEQVVRPTGLIDPEIE 458

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+DV  EI    ++  R+L+T LTKRM+EDLT YL E +++V Y+HS++ TLE
Sbjct: 459 IRPVLTQVDDVLSEITKRREKDERVLITTLTKRMSEDLTSYLKEYDVKVAYLHSDIDTLE 518

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G  DVLVGINLLREGLD+PE  LVAI DADKEGFLRS+ +LIQTIGRAAR
Sbjct: 519 RMQIIHELRTGVHDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERALIQTIGRAAR 578

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++N K ILYAD IT S+Q AIDET RRREKQ+  N +HNI P   +  I + ID     D
Sbjct: 579 HINGKAILYADRITNSMQKAIDETDRRREKQVAFNLEHNITPTGARRSITDKIDTGDDLD 638

Query: 741 A------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           A               +ISI      L+K+  +  L+ L KQM   + +L FE+AA+ RD
Sbjct: 639 ANDNQAIPVKSNLPDVDISILRSPDLLAKEINR--LEKLMKQM---SRDLKFEDAAKTRD 693

Query: 789 EIKRLKS 795
           ++  LK+
Sbjct: 694 KVLELKA 700


>gi|168230684|ref|ZP_02655742.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194471840|ref|ZP_03077824.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194458204|gb|EDX47043.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205334847|gb|EDZ21611.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 673

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/669 (56%), Positives = 477/669 (71%), Gaps = 22/669 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++       
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL------- 597

Query: 741 AATTNISIDAQ---------------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           A   NI+                   +L ++ K  +  +  L  QM   A NL FEEAA+
Sbjct: 598 ALGQNIAKTKAKGKGKGRSTAKGGIVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQ 657

Query: 786 IRDEIKRLK 794
           IRD++ +L+
Sbjct: 658 IRDQLHQLR 666


>gi|221066570|ref|ZP_03542675.1| excinuclease ABC, B subunit [Comamonas testosteroni KF-1]
 gi|220711593|gb|EED66961.1| excinuclease ABC, B subunit [Comamonas testosteroni KF-1]
          Length = 688

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/660 (54%), Positives = 481/660 (72%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQPAAI +L++G++  E  Q LLGVTGSGKTFTMA VI  + +PAIV A
Sbjct: 22  FELFQPYPPAGDQPAAIEKLVEGVNDGESFQTLLGVTGSGKTFTMANVIARLGKPAIVFA 81

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR 
Sbjct: 82  PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 141

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+S++ER D ++V++VS IYGIG  ESY +MI+ L+ GD++ Q++ ++ L++ QY+R 
Sbjct: 142 SCTKSIMERRDVVIVATVSAIYGIGEPESYHRMIMTLRAGDTLNQRDAIAQLIRMQYQRN 201

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD+I++FP+   ++A R+ +F +++E +  F PLTG+  +++    IY
Sbjct: 202 DQDFSRGTFRVRGDTIDVFPAEHSELAVRIELFDDEVESLQLFDPLTGRVRQSIPRFTIY 261

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR  +  A++ IKEEL  RL +L   G+L+EAQRLEQR  +DLEML   G C+
Sbjct: 262 PSSHYVTPRDKVLAAVETIKEELAERLKQLVGMGKLVEAQRLEQRTRFDLEMLSEVGHCK 321

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L+   PG+PP TL +Y+P DS++F+DESH  I Q++ MY GD  RK TL EY
Sbjct: 322 GIENYTRHLSASRPGDPPSTLTDYLPRDSIMFLDESHQMIGQLNAMYNGDRARKTTLVEY 381

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATP  +E     G +VEQ++RPTGLVDP +E
Sbjct: 382 GFRLPSALDNRPLKFEEFEQRMRQVVFVSATPAEYEKTHA-GQVVEQVVRPTGLVDPEIE 440

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DV  EI    +   R+L+T LTKRMAE LTEYL +  ++VRY+HS+V T+E
Sbjct: 441 VRPAIHQVDDVLQEIRQRVELEERVLITTLTKRMAEQLTEYLTDNGVKVRYLHSDVDTVE 500

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 501 RVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 560

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILYAD IT+S++ AI ET RRREKQ+  N+ + I P+ + +++ ++ID +  E 
Sbjct: 561 NVNGKAILYADRITESMKKAIGETERRREKQMAFNEANGIVPKQIVKRVKDLIDGVYSEK 620

Query: 741 AATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +      +  Q L       +++K     +K L KQM   A NL FE+AAR+RD++  LK
Sbjct: 621 SGKEAERLQEQALQQARVEDMTEKDIAREIKRLEKQMLEHARNLEFEQAARVRDQLSLLK 680


>gi|303327019|ref|ZP_07357461.1| excinuclease ABC subunit B [Desulfovibrio sp. 3_1_syn3]
 gi|302863007|gb|EFL85939.1| excinuclease ABC subunit B [Desulfovibrio sp. 3_1_syn3]
          Length = 679

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/671 (53%), Positives = 472/671 (70%), Gaps = 13/671 (1%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K  T F +QT Y P GDQP AI  L   I +    Q+LLGVTGSGKTFTMA VI    RP
Sbjct: 4   KSTTPFSLQTGYTPMGDQPEAITALTDNIRAGVPAQVLLGVTGSGKTFTMANVIARCNRP 63

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
           A+V+APNK LAAQLY+EF+  FP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I
Sbjct: 64  ALVLAPNKTLAAQLYNEFRELFPRNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNI 123

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RH+AT +LL R D ++V+SVSCIYG+GS E Y++M++ +++G  +   +L++ LV+ 
Sbjct: 124 DKLRHAATHALLTRRDVVIVASVSCIYGLGSPEYYAKMVIPVEVGQRLPMDDLITRLVEV 183

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y+R D    RGTFRV GD++EI P++  + A R+  FG+DI+ + E  PLTG+ +  V 
Sbjct: 184 HYERNDYDFHRGTFRVRGDALEIIPAYHHERALRLEFFGDDIDAMREIDPLTGEVLAEVG 243

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              +Y  SH+V+ +  L  A   I++EL  RL   ++ G+L+EAQRLEQR   DLEM+E 
Sbjct: 244 KTVLYPASHFVSAQDNLKRAAGDIRDELTARLTYFKEHGKLVEAQRLEQRTQLDLEMIEE 303

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENY+R+L GR  GEPP  L  Y P D LLFVDESH+TIPQ+ GM++GD  RK 
Sbjct: 304 LGYCNGIENYTRHLDGRKTGEPPSCLLNYFPRDFLLFVDESHITIPQVGGMFKGDRSRKQ 363

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL EYGFRLPS +DNRPL+F+E+  L    + VSATPG +E++Q QGI+ EQIIRPTGLV
Sbjct: 364 TLVEYGFRLPSALDNRPLQFDEFTSLLNQVVYVSATPGRYEMDQAQGIVAEQIIRPTGLV 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VEIR  + Q+ED+  E      +G R+L+T LTKRMAEDLTEY     ++ RY+HS+
Sbjct: 424 DPEVEIRPVKGQMEDLLSECRARVTRGERVLVTTLTKRMAEDLTEYCCNMGVKARYLHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           ++TLER++IIR LR+G+FDVLVGINLLREGLDIPE  LV ILDADKEGFLRS  SLIQT 
Sbjct: 484 IETLERLQIIRALRMGEFDVLVGINLLREGLDIPEVSLVCILDADKEGFLRSTGSLIQTF 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN   +VILYAD +T S++ A+DET RRR KQ  +N++H+I P+S  + +   +D 
Sbjct: 544 GRAARNAQGRVILYADKVTASMKAAMDETGRRRAKQTTYNEEHHITPRSTTKSLESPLDT 603

Query: 736 ILLEDAAT-----------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           + +++ A             N+  DA    L+ +   A +  L K+M  AA +L FE+AA
Sbjct: 604 LYVDNDAAKGRGKGRGNGKANVKADAA--PLTAEDTAALVLKLEKEMRQAARDLEFEQAA 661

Query: 785 RIRDEIKRLKS 795
            +RD I+ L++
Sbjct: 662 ELRDRIRALRA 672


>gi|212695826|ref|ZP_03303954.1| hypothetical protein ANHYDRO_00359 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677151|gb|EEB36758.1| hypothetical protein ANHYDRO_00359 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 659

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/654 (55%), Positives = 479/654 (73%), Gaps = 6/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P GDQP AI +L  GI   +  Q+L GVTGSGKTFTMA +I+ +QRP +V+A
Sbjct: 6   FVIKSDYTPKGDQPQAIKKLANGIKEGKHHQILQGVTGSGKTFTMANIIQEVQRPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL++EFK FFP NAVEYFVSYYDYYQPEAYV  TDTYI K+SSIN++ID++RH
Sbjct: 66  HNKTLAYQLFTEFKEFFPDNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G  E Y ++++ L+ G  +  +E++  L+++Q+ R 
Sbjct: 126 SATMSLFERRDVIIVASVSCIYGLGDPEEYKKLVLSLRPGQEISPEEVMKELIERQFVRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFR  GD ++IFP+  ++ A R+  FG++I+ ISEF  LTG+ I ++    IY
Sbjct: 186 DFDFSRGTFRKRGDVLDIFPAGNDEKAIRIEFFGDEIDRISEFDSLTGKVISHISHGYIY 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T       A+  IKEELK RL ELE E +L+EAQRLEQR  YD+EMLE  G C 
Sbjct: 246 PASHYATTAEKAEAAIVTIKEELKERLAELEGENKLVEAQRLEQRTNYDIEMLEEIGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++ R PG  P TL +Y P+D +LFVDESHV+IPQ+ GMY GD  RK  L +Y
Sbjct: 306 GIENYSRHMSQREPGSRPATLIDYFPDDFVLFVDESHVSIPQVGGMYEGDRSRKQNLVDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+  L   TI VSATPG +E+E+  G +VEQIIRPTGL+DP ++
Sbjct: 366 GFRLPSALDNRPLKFKEFEKLINQTIYVSATPGPYEMEKTGGEVVEQIIRPTGLLDPLID 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ + I+   ++  R+L+T LTKRMAEDLT+YL E  I+V+Y+HS++KT+E
Sbjct: 426 VKPVENQIDDLIENIHQTIEKKERVLVTTLTKRMAEDLTDYLSENGIKVKYLHSDIKTIE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLGKFDVLVGINLLREGLD+PE  L+AILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 486 RSEIIRDLRLGKFDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT+S++ AIDET RRR+ Q E NKKH I P ++K+ I E+I   + E 
Sbjct: 546 NSEGHVIMYADKITRSMKKAIDETERRRKIQTEFNKKHGITPTTIKKNISEIIQ--VTEK 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A   +     ++   S K+    L +L  +M+ AA+ L+FE+AA +RD+I ++K
Sbjct: 604 AENAS----EEKEEFSPKEIDNILINLETEMYAAAEELDFEKAASLRDQIAKMK 653


>gi|296103294|ref|YP_003613440.1| excinuclease ABC subunit B [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295057753|gb|ADF62491.1| excinuclease ABC subunit B [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 671

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/662 (56%), Positives = 478/662 (72%), Gaps = 10/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMIIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTG     ++   IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGHVESVIQRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAERRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPVIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   +    R+L+T LTKRMAEDLTEYL E   +VRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRARSAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTNIS--------IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            A T           ++   ++L+ K  +  +  L  QM   A NL FEEAA+IRD++ +
Sbjct: 603 IAKTKAKGRGKARSVVEEDTVALTPKALQQKIHELEAQMMQHAQNLEFEEAAQIRDQLHQ 662

Query: 793 LK 794
           L+
Sbjct: 663 LR 664


>gi|296136304|ref|YP_003643546.1| excinuclease ABC, B subunit [Thiomonas intermedia K12]
 gi|295796426|gb|ADG31216.1| excinuclease ABC, B subunit [Thiomonas intermedia K12]
          Length = 697

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/668 (54%), Positives = 481/668 (72%), Gaps = 6/668 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQP AIAQL +G+      Q LLGVTGSGKT+T+A VI  M RPAIV A
Sbjct: 23  FRLYQPYPPAGDQPTAIAQLAEGLGDGLSYQTLLGVTGSGKTYTIANVIARMGRPAIVFA 82

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR 
Sbjct: 83  PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 142

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER D ++V+SVS IYGIG+   Y  MI+ ++ GD + Q+++++ LV+ QY+R 
Sbjct: 143 SATKSLLERRDVVIVASVSAIYGIGNPSDYHAMILTVRTGDRMGQRDVIAQLVRMQYQRN 202

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGTFRV GD I++FP+   ++A R+ +F ++IE +S F PLTG   + +    IY
Sbjct: 203 EVDFTRGTFRVRGDRIDVFPAEHAELAVRIELFDDEIETLSLFDPLTGVVRQKIPRFTIY 262

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR  +  A++ IK+EL+ R  EL   G+L+EAQRLEQR  +DLEML   G C+
Sbjct: 263 PSSHYVTPREKVLEAVEGIKQELRERSKELTGMGKLVEAQRLEQRTRFDLEMLTEIGHCK 322

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G  PGEPPPTL +Y+P D+++F+DESHV I Q +GMY GD  RK TL +Y
Sbjct: 323 GIENYSRHLSGAAPGEPPPTLVDYLPPDAIMFLDESHVLIGQFNGMYNGDRARKQTLVDY 382

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+      T+ VSATP  +E +     +VEQ++RPTGLVDP +E
Sbjct: 383 GFRLPSALDNRPLKFAEFERKMRQTVFVSATPADYESQHADQ-VVEQVVRPTGLVDPLIE 441

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A +QV+DV  EI L   +G R+L+T LTKRMAE LT+YL E  ++VRY+HS++ T+E
Sbjct: 442 VRPASSQVDDVLGEIRLRVNKGERVLITTLTKRMAEQLTDYLDENGVKVRYLHSDIDTVE 501

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 502 RVEILRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 561

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILY D IT S++ AIDET RRR KQ+  N +H I P ++ + + ++ID ++   
Sbjct: 562 NVNGMAILYGDRITDSMRRAIDETERRRAKQIAFNTEHGITPTALNKSVRDLIDGVVQTP 621

Query: 741 AA---TTNISIDAQQLSLSKKKGKA-HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                  ++  +  +L +   +  A  +K L K+M   A NL FE+AAR+RD++  L+  
Sbjct: 622 GKGLRAGSVEREIAELQIDNAQDVAREIKRLEKRMIEHARNLEFEQAARVRDQLGLLRQR 681

Query: 797 PYFQGLDD 804
             F G DD
Sbjct: 682 -VFGGGDD 688


>gi|238898698|ref|YP_002924379.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259710328|sp|C4K6N8|UVRB_HAMD5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|229466457|gb|ACQ68231.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 671

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/666 (54%), Positives = 479/666 (71%), Gaps = 20/666 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ PSGDQP AI QL +G+ +    Q LLGVTGSGKTFT+A VI  + RP +++A
Sbjct: 5   FKLHSNFKPSGDQPEAIHQLKEGLKNGLMHQTLLGVTGSGKTFTVANVIADLNRPTMILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++++NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKDFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L+ L + QY R 
Sbjct: 125 SATKALLERQDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILARLSELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G++I+IFP+   D A R+ +F +++E +S F PLTG   + V    +Y
Sbjct: 185 DQVFQRGTFRVRGENIDIFPAESSDFAVRIELFDDEVERLSLFAPLTGHIQKTVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  +M+ IK EL  R  +L    +L+E QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRARILQSMEEIKIELAQRREQLLANNKLVEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P + LL +DESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRAAGEPPPTLFDYLPSEGLLVIDESHVTIPQIGGMYKGDRSRKQTLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L P TI +SATPG +EL +  G ++EQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFESLAPQTIYISATPGPYELGKSAGELIEQVVRPTGLLDPVIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI        R+L+T LTKRMAEDLTEYL E+  RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRVVIDERVLVTTLTKRMAEDLTEYLAEQGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           N+N K ILY D IT S++ AIDET RRR+KQ  +NK+  I P+ +++KI ++++      
Sbjct: 545 NLNGKAILYGDKITVSMKKAIDETERRRKKQESYNKEKGIVPKKLEKKIRDILELGQSYT 604

Query: 735 -------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                     LE+ +T          +LS K  K  +  L ++MH  A N+ FE+A ++R
Sbjct: 605 KGKARKRTTTLEENSTNYT-------ALSPKAIKKKIDELEQKMHDHAQNMEFEKAGQLR 657

Query: 788 DEIKRL 793
           DEI++L
Sbjct: 658 DEIQQL 663


>gi|161504034|ref|YP_001571146.1| excinuclease ABC subunit B [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|189037996|sp|A9MJE1|UVRB_SALAR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|160865381|gb|ABX22004.1| hypothetical protein SARI_02127 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 673

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/666 (56%), Positives = 476/666 (71%), Gaps = 16/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVEATVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++       
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604

Query: 734 -----DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                        A T I     +L ++ K  +  +  L  QM   A NL FEEAA+IRD
Sbjct: 605 KTKAKGKGKGRSTAKTGIV----ELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRD 660

Query: 789 EIKRLK 794
           ++ +L+
Sbjct: 661 QLHQLR 666


>gi|171463235|ref|YP_001797348.1| excinuclease ABC, B subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192773|gb|ACB43734.1| excinuclease ABC, B subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 718

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/688 (53%), Positives = 485/688 (70%), Gaps = 9/688 (1%)

Query: 114 NPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLL 173
           +PL + G    P +  +  +     + +Q+   + P+GDQP AI  L++GI      Q L
Sbjct: 28  DPLGEAGHDLDPAKFITFPD-----SLYQLYQPFAPAGDQPQAIDALVEGIEDGLTFQTL 82

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           LGVTGSGKTFTMA VI    RPAI+ APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQ
Sbjct: 83  LGVTGSGKTFTMANVIARTGRPAIIFAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQ 142

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
           PEAYVP+ D +IEK+SSINE I++MR SAT+SLLER D ++V++VS IYGIG+   Y  M
Sbjct: 143 PEAYVPQRDLFIEKDSSINEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPGDYHSM 202

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
           ++ L+ GD + Q+++L  L+  QY R +    RG FRV GD+I+IFP+   ++A RV +F
Sbjct: 203 VMTLRPGDKMSQRDILMRLIAMQYDRNETDFKRGVFRVRGDTIDIFPAEHNELAVRVELF 262

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
            + IE +  F PLTG+  + +    +Y +SHYVTPR T+  A++ IK EL+ RL E  K+
Sbjct: 263 DDVIESLQFFDPLTGKIRQKIPQFTVYPSSHYVTPRDTVLKAIETIKTELRTRLDEFVKD 322

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
           G+L+EAQRLEQR  +DLEML   G C+ IENYSR+L+G  PGE PPTL +Y+P D+++F+
Sbjct: 323 GKLVEAQRLEQRTRFDLEMLNELGFCKGIENYSRHLSGAAPGEAPPTLVDYLPNDAVMFL 382

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
           DESHV I Q++ MY GD  RK TL E+GFRLPS MDNRPL+F E+      TI VSATP 
Sbjct: 383 DESHVLIGQLNAMYNGDKSRKHTLVEFGFRLPSAMDNRPLKFAEFETKMRQTIFVSATPA 442

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E    QG +VEQ+ RPTGLVDP +E+  A TQV+D+ D+I+   + G R+L+TVLTKR
Sbjct: 443 DYEGTH-QGQVVEQVARPTGLVDPEIEVLPASTQVDDLLDQIHARVKVGERVLVTVLTKR 501

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAE LT+YL +  ++VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  L
Sbjct: 502 MAEQLTDYLSDNGVKVRYVHSDIDTVERVEILRDLRLGVFDVLVGINLLREGLDIPEVSL 561

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           VAILDADKEGFLRS+ SLIQTIGRAARNV  K ILYAD IT S++ A+ ET RRR KQ+ 
Sbjct: 562 VAILDADKEGFLRSERSLIQTIGRAARNVRGKAILYADRITDSMKRAMGETERRRTKQIA 621

Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID---AQQLSLSKKKGKAHLKSLRKQ 770
            NK H I P+ V+++I ++ID +         + I+   A+   + +K   A +K L KQ
Sbjct: 622 FNKLHGIEPKGVQKRIKDIIDGVYDVKEKRQEMQIEQERARYEDMGEKDLVAEIKRLEKQ 681

Query: 771 MHLAADNLNFEEAARIRDEIKRLKSSPY 798
           M+  A NL FE+AA  RD + ++K   +
Sbjct: 682 MNAEAKNLEFEKAAGTRDRLTKVKEMAF 709


>gi|261401276|ref|ZP_05987401.1| excinuclease ABC subunit B [Neisseria lactamica ATCC 23970]
 gi|269208761|gb|EEZ75216.1| excinuclease ABC subunit B [Neisseria lactamica ATCC 23970]
          Length = 675

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/667 (54%), Positives = 482/667 (72%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIARSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ RND I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFTREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPKII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVVTQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +        +Q     K G+ H        +  L K M  AA +L FEEAA +RD I+ 
Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665

Query: 793 LKSSPYF 799
           +K S  F
Sbjct: 666 IKESMLF 672


>gi|284097822|ref|ZP_06385805.1| UvrABC system protein B [Candidatus Poribacteria sp. WGA-A3]
 gi|283830664|gb|EFC34791.1| UvrABC system protein B [Candidatus Poribacteria sp. WGA-A3]
          Length = 668

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/661 (52%), Positives = 479/661 (72%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++++ P GDQ  AI  L +G+H+ ++ Q+LLGVTGSGKTFTMA VI  +Q+P +V+ 
Sbjct: 4   FQLESEFSPKGDQQQAIDALTEGVHAGKQHQVLLGVTGSGKTFTMANVIAKIQKPTLVVV 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAY+P TDTYI K++SIN+ ID+MRH
Sbjct: 64  HNKTLAAQLYQEFKSFFPQNAVEYFVSYYDYYQPEAYIPSTDTYIAKDASINDTIDQMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LLER+D ++V+SVSCIYG+GS E Y  M++ L+ G ++ ++ +L+ LV  QY R 
Sbjct: 124 AATSALLERDDILIVASVSCIYGLGSPEVYHGMLLYLEEGMTIRREAILAKLVDIQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RGTFR  GD IEIFP+  +    RV +FG+ +E I+E  PLTG+ +  +  + IY
Sbjct: 184 DVELQRGTFRARGDVIEIFPAASDSNTVRVELFGDVVESIAEIDPLTGRSLGRLSKVPIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV      + A++ I+EEL  RL+   +  +LLEAQR+EQR  +DLEM+   G C 
Sbjct: 244 PKSHYVIAPDRYDRALQGIEEELDERLVYFRRHNQLLEAQRVEQRTRFDLEMIRAMGYCH 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTL +Y P+D LL VDESHVT+PQ  GMY GD  RK TL EY
Sbjct: 304 GIENYSRHLSGRAPGEPPPTLLDYFPKDYLLIVDESHVTVPQFGGMYEGDHSRKKTLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+F+E+  +    + VSATPG +EL      +VEQIIRPTGL+DP +E
Sbjct: 364 GFRLPSAMDNRPLKFQEFERVMNRVMYVSATPGPYELRHAGESVVEQIIRPTGLMDPVLE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ A+ QV+D+  E+  +  +G R+L+T LTKRMAEDLTEY ++  ++VRY+HS+++TLE
Sbjct: 424 VKPAKGQVDDLLQEVKASIARGFRVLVTTLTKRMAEDLTEYYHDLGLKVRYLHSDIQTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLR G FDVLVGINLLREGLD+PE  LV +LDADKEGFLR   +LIQT GRAAR
Sbjct: 484 RAEIIRDLRRGVFDVLVGINLLREGLDLPEVALVGVLDADKEGFLRGHRALIQTAGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVILY DTIT S+++ I+ET+RRR+ Q ++N+++ I P+++K++I ++   +   D
Sbjct: 544 NSEGKVILYGDTITDSMKVTIEETSRRRQIQADYNRRNGITPETIKKRIHDLDYHVAEAD 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
               +I+ + + +  ++   +  + +L ++M  AA  L FE AA++RD I+ L+      
Sbjct: 604 YVDVSIAAEEEAVYTTEADVEKTVAALEQEMKAAAKMLEFERAAKLRDRIRALRQQELLF 663

Query: 801 G 801
           G
Sbjct: 664 G 664


>gi|271501009|ref|YP_003334034.1| excinuclease ABC subunit B [Dickeya dadantii Ech586]
 gi|270344564|gb|ACZ77329.1| excinuclease ABC, B subunit [Dickeya dadantii Ech586]
          Length = 670

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/664 (56%), Positives = 476/664 (71%), Gaps = 15/664 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHSAFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTG  ++ V    IY
Sbjct: 185 DQAFSRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHIVQTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR T+DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRLAQRTTFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVTIPQ+ GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+  G I++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEIIDQVVRPTGLLDPVLE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVTTQVDDLLSEIRKRAVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD IT S++ AI+ET RRREKQ  +N++H I PQ + +KI ++     L+ 
Sbjct: 545 NLNGKAILYADRITPSMERAINETQRRREKQQAYNEQHGIVPQGLNKKIGDI-----LQI 599

Query: 741 AATTNISID----------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
             + N              A+   LS K     ++ L  QM   A NL FEEAAR+RDEI
Sbjct: 600 GQSVNGKGKGRGKKAAEPAARYQQLSPKALDQKIRELESQMLTHAQNLEFEEAARLRDEI 659

Query: 791 KRLK 794
             L+
Sbjct: 660 HALR 663


>gi|157375183|ref|YP_001473783.1| excinuclease ABC subunit B [Shewanella sediminis HAW-EB3]
 gi|157317557|gb|ABV36655.1| excinuclease ABC, B subunit [Shewanella sediminis HAW-EB3]
          Length = 675

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/664 (53%), Positives = 480/664 (72%), Gaps = 11/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++ Y P+GDQP AI +L+ GI S    Q LLGVTGSGKTFT+A VI+ + RP I+MA
Sbjct: 11  FQLESQYSPAGDQPKAIEKLVDGIESGVACQTLLGVTGSGKTFTIANVIKQLARPTIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP T+T+IEK++S+N  I++MR 
Sbjct: 71  PNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTNTFIEKDASVNAHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD ++Q+++L  L + QY R 
Sbjct: 131 SATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDFMDQRDILKRLSELQYTRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + RGT+RV G+ I+IFP+  +  A RV +F  +IE +S F PLTG   + +    IY
Sbjct: 191 DIELKRGTYRVRGEVIDIFPADSDKEAIRVELFDVEIERLSLFDPLTGHISKRIARTTIY 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  +  A + IKEEL++R  +L    +L+EAQR+ +R+ YD+EM+   G C 
Sbjct: 251 PKSHYVTPREKILAATEEIKEELRIRKKQLLDNNKLIEAQRINERVQYDIEMMTELGYCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G+ PPTL +Y+P+D LL +DESHVT+PQI  MY+GD  RK+ L EY
Sbjct: 311 GIENYSRYLSGRAEGDGPPTLLDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKSNLVEY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATP  +E+++  G + +Q+IRPTGL+DP +E
Sbjct: 371 GFRLPSALDNRPLKFEEFERLMPQTIYVSATPSQYEVDKSDGEVAQQVIRPTGLLDPVLE 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  E+    +   R+L+T LTKRM+EDL+EYL E  I+VRY+HS++ T+E
Sbjct: 431 VRPIAIQVDDLLSEVAQRVKVNERVLVTTLTKRMSEDLSEYLDEHGIKVRYLHSDIDTVE 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 491 RVEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVCILDADKEGFLRSERSLIQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N KVILYAD IT S+  A+ ET RRR+ Q + N  + I P+ V +KI +V+D   + D
Sbjct: 551 NINGKVILYADKITDSMSRAMGETERRRKLQHQFNLDNGIVPKGVSKKITDVMD---VGD 607

Query: 741 AATTNISIDAQQLSLSKKKGKA--------HLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +     +D  +++ S+              + +L KQMH  A NL FE+AA +RD++ +
Sbjct: 608 KSADGQDVDNNKVAESRAPYGGPDIATLSHQMDALEKQMHEHAKNLEFEQAAALRDQVAK 667

Query: 793 LKSS 796
           L+ +
Sbjct: 668 LREA 671


>gi|220932459|ref|YP_002509367.1| excinuclease ABC, B subunit [Halothermothrix orenii H 168]
 gi|219993769|gb|ACL70372.1| excinuclease ABC, B subunit [Halothermothrix orenii H 168]
          Length = 672

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/655 (56%), Positives = 482/655 (73%), Gaps = 9/655 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L+KG++   + Q LLG TG+GKT+TMA VIE + +P +V+A
Sbjct: 7   FKLVSSYSPKGDQPQAIEKLVKGVNKGYRHQTLLGATGTGKTYTMAAVIEKLNKPTLVIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP NAV YFVSYYDYYQPEAYVP+TDTYIEK++SINE ID++R 
Sbjct: 67  HNKTLAAQLCSEFREFFPENAVHYFVSYYDYYQPEAYVPQTDTYIEKDASINEDIDKLRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT SL ER D ++V+SVSCIYG+G+ E Y  +   LK+GD  E+  +L  L+  QY R 
Sbjct: 127 AATSSLFERRDVLIVASVSCIYGLGNPEDYLDLSCHLKVGDLKERNTILQELIFMQYSRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + RG FRV GD I+IFP++  D A RV +FG++I+ I++   +TG+ ++ ++ I IY
Sbjct: 187 DIDLSRGHFRVKGDVIDIFPAY-RDEAIRVELFGDEIDRITKINTVTGEVLQEIDEITIY 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VTP   +  A+K I+ EL+ RL EL+K+ RL+EAQRLEQR  YD+EMLE  G C 
Sbjct: 246 PASHFVTPEDKIKRALKTIQVELEERLKELKKQNRLVEAQRLEQRTRYDMEMLEQMGYCT 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFVDESHVTIPQISGMYRGDFHRKATLAE 499
            IENYSR+L GR PG  P TL +Y P+D  L+ +DESH+TIPQI GMY GD  RK  L E
Sbjct: 306 GIENYSRHLEGRPPGSRPNTLLDYFPDDDFLVIIDESHMTIPQIGGMYAGDRSRKEKLVE 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL FEE+  L P  I VSATPG +EL+  Q + VEQIIRPTGLVDP V
Sbjct: 366 YGFRLPSALDNRPLNFEEFEKLVPRAIYVSATPGPYELKHSQQV-VEQIIRPTGLVDPVV 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            ++    Q++D+ DEI    ++  R+L+T LTKRMAEDLTE+L E  IRVRY+HS++ TL
Sbjct: 425 IVKPTEGQIDDLMDEIQQVIEREERVLVTTLTKRMAEDLTEFLAEAGIRVRYLHSDIDTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS+ SLIQTIGRAA
Sbjct: 485 ERSEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--IL 737
           RNVN +V++YAD IT+S++ AIDET RRR+ QLE NKKH I P ++ + + +V+ P  ++
Sbjct: 545 RNVNGRVVMYADKITESMEKAIDETERRRKIQLEFNKKHGITPTTIVKPVRKVLRPEDMI 604

Query: 738 LEDAATTNISIDAQQ----LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           ++D    + S+ + +     +LS  + +  +  L ++M  AADNL FE AA+IRD
Sbjct: 605 IKDVDEIDYSVKSGEGEEIKNLSPSEIRHRILELEEEMKEAADNLEFELAAQIRD 659


>gi|33601256|ref|NP_888816.1| excinuclease ABC subunit B [Bordetella bronchiseptica RB50]
 gi|81837009|sp|Q7WK66|UVRB_BORBR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|33575691|emb|CAE32769.1| excinuclease ABC subunit B [Bordetella bronchiseptica RB50]
          Length = 675

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/662 (55%), Positives = 475/662 (71%), Gaps = 1/662 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   Y P+GDQP AI  L +G+      Q LLGVTGSGKT+TMA +I  + RPA+V+A
Sbjct: 14  FHLYQPYPPAGDQPGAIDALTEGVSDGLMFQTLLGVTGSGKTYTMANMIARLGRPALVLA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++MR 
Sbjct: 74  PNKTLAAQLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRL 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER D ++V +VSCIYGIG+   Y  M++ L+ GD + ++E+L+ LV  QY R 
Sbjct: 134 SATKSLLERRDTVIVGTVSCIYGIGNPGDYHAMVLILRTGDRISRREVLARLVAMQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV G++I+IFP+   ++A R+++F ++IE +  F PLTG+  + +    +Y
Sbjct: 194 DADFTRGVFRVRGETIDIFPAESPELALRLTLFDDEIESLELFDPLTGRVRQKLPRFTVY 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR T+  A++ IKEEL+ RL +L  +G+L+EAQRLEQR  +DLEML+  G C+
Sbjct: 254 PGSHYVTPRETVLRAIETIKEELRERLAQLIADGKLVEAQRLEQRTRFDLEMLQELGFCK 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHVTI Q+ GMYRGD  RK TL +Y
Sbjct: 314 GIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQLGGMYRGDRSRKETLVQY 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATP ++E E     +VEQ++RPTGLVDP VE
Sbjct: 374 GFRLPSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHADN-VVEQVVRPTGLVDPIVE 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI+  A    R+L+T LTKRMAEDLT++L E  +RVRY+HS++ T+E
Sbjct: 433 VRPAHTQVDDLLGEIHKRAALQERVLVTTLTKRMAEDLTDFLSEHGVRVRYLHSDIDTVE 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 493 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD IT S++ AIDET RRR KQ++HN  H I  + V + + E+ID ++   
Sbjct: 553 NLNGRAILYADRITDSMRRAIDETERRRAKQIQHNTDHGITARGVSKAVRELIDGVVAPA 612

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
                 S    ++   +K     ++ L K M   A NL FE+AA  RD +  LKS     
Sbjct: 613 GHDALESAVPAEVLTDEKAMAREIRRLEKLMMDHARNLEFEQAAAARDALNALKSRLLLD 672

Query: 801 GL 802
           G+
Sbjct: 673 GV 674


>gi|253687898|ref|YP_003017088.1| excinuclease ABC, B subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259710330|sp|C6DDU0|UVRB_PECCP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|251754476|gb|ACT12552.1| excinuclease ABC, B subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 670

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/665 (55%), Positives = 472/665 (70%), Gaps = 15/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +++A
Sbjct: 5   FTLNSDFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMMLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTG  ++ V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHVLQTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +L+E QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEDIKVELADRRKVLLANDKLVEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAVNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILY D IT S+  AI ET RRREKQ  +N +H I PQ + +KI ++     L+ 
Sbjct: 545 NLRGKAILYGDKITPSMAKAIGETERRREKQEAYNTEHGIVPQGLNKKISDI-----LQL 599

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
              TN              A+   ++ K  +  ++ L  +M   A NL FEEAA +RDE+
Sbjct: 600 GQPTNRGKGRGNRKAAEPAARYELMTPKALELKIRELESKMLTHAQNLEFEEAAALRDEL 659

Query: 791 KRLKS 795
           + L++
Sbjct: 660 QALRA 664


>gi|225175306|ref|ZP_03729301.1| excinuclease ABC, B subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225169058|gb|EEG77857.1| excinuclease ABC, B subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 663

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/659 (55%), Positives = 477/659 (72%), Gaps = 1/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T FQ+++++ P GDQP AI +L +G+    + Q LLGVTGSGKTFTMA +IE +QRP +
Sbjct: 1   MTRFQIKSEFGPQGDQPKAIEELTEGLKKGFRHQTLLGVTGSGKTFTMANIIEKVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF++FFP NAVEYFVSYYDYYQPEAY+P++DTYIEK+S+IN++I++
Sbjct: 61  VIAHNKTLAAQLCSEFRDFFPDNAVEYFVSYYDYYQPEAYIPQSDTYIEKDSAINDEIEK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+GS + Y + +V L++G    + E++  LV  Q+
Sbjct: 121 LRHSATSALFERRDVIIVASVSCIYGLGSPDEYREHVVSLRVGMEKSRDEIVKQLVSIQF 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+ + R  FRV GD +EIFP+   + A RV  FG++IE I E   LTG+ +   + I
Sbjct: 181 ERNDVQLERSRFRVRGDVLEIFPASSTEKAVRVEFFGDEIERIREIDTLTGEILGERQHI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+VT R TL  AM  I+ EL++RL EL    +LLEAQRLEQR  YDLEM+   G
Sbjct: 241 AIFPASHFVTSRDTLEAAMVDIRSELEVRLQELRSRDKLLEAQRLEQRTNYDLEMMNEIG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR++  R  G  P TL +Y PED LLF+DESH TIPQ+ GMY GD  RK TL
Sbjct: 301 FCTGIENYSRHMDRRPAGSRPHTLIDYFPEDFLLFIDESHQTIPQVRGMYAGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL F E+  L    + VSATPG +E E  Q  +VEQIIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLIFHEFEELVNQAVYVSATPGPYEQEHSQQ-VVEQIIRPTGLIDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R  + Q++D+Y EI L A+   R+L+T LTKRMAEDLTEY  E  +RVRY+HSE+ 
Sbjct: 420 EIIMRPVKGQIDDLYGEIRLRAEANERVLVTTLTKRMAEDLTEYYKELGVRVRYLHSEIN 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 TLERMEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+  VI+YAD +T S+Q A+DET RRR+ Q+E N++HNI P ++K+ +  VI+   
Sbjct: 540 AARNVHGTVIMYADKVTDSMQKAMDETERRRQIQMEFNREHNITPATIKKAVRAVIEATQ 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + + A ++         LS  + K  +  L K+M  AA  L+FE+AA +RD I  L+ +
Sbjct: 600 VAEEALSDYVDKDSPAELSPAERKKTIAKLEKEMKKAAKELDFEQAAHLRDMIAALRKT 658


>gi|254669942|emb|CBA04546.1| excinuclease ABC subunit B [Neisseria meningitidis alpha153]
          Length = 699

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/667 (54%), Positives = 481/667 (72%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP+AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 35  FKLHQPFPPAGDQPSAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 94

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 95  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 154

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ RND I+V++VS IYGIG    Y QM++ +K GD++ Q++++++LV  QY+R 
Sbjct: 155 SATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIAQRDIIATLVSMQYERG 214

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    ++
Sbjct: 215 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 274

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G C+
Sbjct: 275 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 334

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 335 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 394

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 395 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 453

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 454 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 513

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 514 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 573

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 574 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 633

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +        +Q     K GK H        +  L K M  AA +L FEEAA +RD I+ 
Sbjct: 634 DSGKG----RRQGKNKVKVGKIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRG 689

Query: 793 LKSSPYF 799
           +K    F
Sbjct: 690 IKEGLLF 696


>gi|251790133|ref|YP_003004854.1| excinuclease ABC subunit B [Dickeya zeae Ech1591]
 gi|247538754|gb|ACT07375.1| excinuclease ABC, B subunit [Dickeya zeae Ech1591]
          Length = 670

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/659 (56%), Positives = 474/659 (71%), Gaps = 5/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHSAFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ED+A RV +F  ++E +S F PLTG  ++ V    IY
Sbjct: 185 DQAFGRGTFRVRGEIIDIFPAESEDIALRVELFDEEVERLSLFDPLTGHIVQVVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR T+DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRLAQRTTFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVTIPQ+ GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+  G I++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEIIDQVVRPTGLLDPQLE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   +    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVTTQVDDLLSEIRKRSAISERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N+N K ILY D IT S++ AI+ET RRREKQ  +N++H I PQ + +KI +++    P  
Sbjct: 545 NLNGKAILYGDKITPSMERAINETQRRREKQQAYNEQHGIVPQGLNKKIGDILQIGQPTH 604

Query: 738 LEDAATTNISID--AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                    + +  AQ   LS K     ++ L  QM   A NL FEEAA +RDEI  L+
Sbjct: 605 GRGKGRGKKAAEPAAQYQQLSPKALDQKIRELESQMLAHAQNLEFEEAAHLRDEIHALR 663


>gi|118594781|ref|ZP_01552128.1| excinuclease ABC subunit B [Methylophilales bacterium HTCC2181]
 gi|118440559|gb|EAV47186.1| excinuclease ABC subunit B [Methylophilales bacterium HTCC2181]
          Length = 677

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/669 (55%), Positives = 482/669 (72%), Gaps = 8/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           + +   + P+GDQP AI +L +G+ + EK Q LLGVTGSGKTFT+A VI    + AIVMA
Sbjct: 10  YLLHKPFEPAGDQPDAIDKLTEGVTNGEKFQTLLGVTGSGKTFTIANVIARTGKSAIVMA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFPHNAVEYFVSYYDYYQPEAYVP  D +IEK+SSIN+ I++MR 
Sbjct: 70  PNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAYVPGRDVFIEKDSSINDHIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLERND I+V++VS IYGIG   +Y  M++ +++G+ + Q+ ++  LV  QY+R 
Sbjct: 130 SATKALLERNDSIIVATVSAIYGIGDPIAYQGMVLYIEVGEKLLQRNIILRLVSMQYERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD I+IFP+   + A RVS+F + +E IS F PLTGQ    ++   +Y
Sbjct: 190 DFDFSRGCFRVRGDVIDIFPAENSETAIRVSLFDDVVEGISTFDPLTGQIFEKIKRFTVY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  AM+ IK EL+ R+ E   + +L+EAQR+EQR  +DLEML   G C+
Sbjct: 250 PSSHYVTPRDTVLNAMEKIKVELQSRIKEFVDQTKLVEAQRIEQRTKFDLEMLNEIGFCK 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GEP PTL +Y+P+D+L+ +DESHVTIPQI GM +GD  RK  L +Y
Sbjct: 310 GIENYSRHLSGRGEGEPAPTLLDYLPKDALMIIDESHVTIPQIGGMSKGDRARKNNLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRFEE+  + P TI VSATP ++E E  + IIVEQ+ RPTGL+DP + 
Sbjct: 370 GFRLPSAHDNRPLRFEEFEKILPQTIFVSATPANYEAENSK-IIVEQVARPTGLIDPEIF 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ A +QV+D+  EI L  Q+  R+L+T LTKRMAEDLT+YL E +I+VRY+HSE+ T+E
Sbjct: 429 VKPADSQVDDLLSEITLRVQKDERVLVTTLTKRMAEDLTDYLTEHSIKVRYLHSEIDTVE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDV+VGINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQT GRAAR
Sbjct: 489 RVEIIRDLRLGKFDVVVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTAGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N KVI Y ++IT+S++ AIDET RRR KQ++ NK +NI P  V  K         LED
Sbjct: 549 NLNGKVIFYGNSITRSMKAAIDETKRRRVKQIQFNKDNNITP--VGIKKKIKDIIDGLED 606

Query: 741 AATTNISIDAQQLS-----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                   +A++ +     L++ +    +  L K M   A +L+FE AA+ RD++K LK 
Sbjct: 607 VDEHKRVQEAKKENRKYEDLTEPQILKEISKLEKVMQKFARDLDFENAAKTRDQVKFLKE 666

Query: 796 SPYFQGLDD 804
             Y   + D
Sbjct: 667 RVYGANIKD 675


>gi|300715922|ref|YP_003740725.1| UvrABC system protein B [Erwinia billingiae Eb661]
 gi|299061758|emb|CAX58874.1| UvrABC system protein B [Erwinia billingiae Eb661]
          Length = 673

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/665 (55%), Positives = 468/665 (70%), Gaps = 14/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLNSEFKPAGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMVIDQRSILRRLSELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A RV +F  ++E +S F PLTGQ    V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSIFDPLTGQVTSVVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKVELADRRKVLLNNNKLLEEQRISQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+ R PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSARGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG +ELE+  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGKYELEKSGGEVIDQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI        R+L+TVLTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVSTQVDDLLSEIRKRVAINERVLVTVLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S++ AI ET RRR KQ  +N ++ I PQ + +KI ++++   L  
Sbjct: 545 NLNGKAILYGDKITPSMERAIGETERRRAKQEIYNAENGIVPQGLNKKIADILE---LGQ 601

Query: 741 AATTN-----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
               N           +  DA  L LS K  +  +  L  QM   A NL FEEAA IRD+
Sbjct: 602 GLAKNKSRGRAKAGRIVEDDAPYLDLSPKGLQKKIHQLEAQMQEHAQNLEFEEAANIRDQ 661

Query: 790 IKRLK 794
           + +++
Sbjct: 662 LHKVR 666


>gi|212640367|ref|YP_002316887.1| excinuclease ABC subunit B [Anoxybacillus flavithermus WK1]
 gi|212561847|gb|ACJ34902.1| Excinuclease ABC (subunit B, helicase) [Anoxybacillus flavithermus
           WK1]
          Length = 657

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/658 (56%), Positives = 482/658 (73%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ + Y P GDQP AIA+L++GI   +K Q LLG TG+GKTFT++ VI+ + +P +
Sbjct: 1   MSAFQLVSAYEPRGDQPKAIAKLVEGIQQGKKHQTLLGATGTGKTFTISNVIQQVNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK++SIN++ID+
Sbjct: 61  VIAHNKTLAGQLYSEFKQFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+++SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY
Sbjct: 121 LRHSATSALFERRDVIIIASVSCIYGLGSPEEYRELVVSLRVGMEIERDHLLRRLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD +EIFP+  ++   R+  FG++IE I E   LTG  +   E +
Sbjct: 181 ERNDIDFRRGTFRVRGDVVEIFPASRDEHCIRIEFFGDEIERIREVDALTGYVMAEREHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+VT    +  A++ I++EL+ RL EL ++G+LLEAQRLEQR  YD+EM++  G
Sbjct: 241 AIFPASHFVTREEKMKLAIENIEKELEERLCELREQGKLLEAQRLEQRTRYDIEMMKEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LT R PG  P TL +Y P+D L+ +DESHVT+PQI GMY GD  RK  L
Sbjct: 301 FCSGIENYSRHLTLRPPGSTPYTLLDYFPDDFLIVIDESHVTLPQIRGMYNGDKARKEVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL FEE+       I VSATPG +ELE C+  +VEQIIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLTFEEFEQKVNQVIYVSATPGPYELEHCRE-VVEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R    Q++D+ DEI        R L+T LTK+MAEDLT+YL +  I+V Y+HSE+K
Sbjct: 420 TIDVRPIAGQIDDLVDEIQKRIACNERTLVTTLTKKMAEDLTDYLKDIGIQVAYLHSEIK 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N  VI+YADTITKS+++AI+ET RRR  Q  +N++H I P+++++ I +VI    
Sbjct: 540 AARNANGHVIMYADTITKSMEIAINETKRRRAIQEAYNREHGIVPKTIQKDIPDVIRATF 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             +   T  + D +   LSK++  A +  L ++M  AA  L+FE AA +RD I  LK+
Sbjct: 600 AAEEKETYETKDVRH--LSKEERVALIAKLEQEMKEAAKALHFERAAELRDLILELKA 655


>gi|2909345|emb|CAA74675.1| ultraviolet resistance protein [Neisseria meningitidis]
          Length = 675

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/667 (54%), Positives = 482/667 (72%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ RND I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P TI VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +        +Q     K G+ H        +  L K M  AA +L FEEAA +RD I+ 
Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665

Query: 793 LKSSPYF 799
           +K +  F
Sbjct: 666 IKENLLF 672


>gi|302038376|ref|YP_003798698.1| excinuclease ABC subunit B [Candidatus Nitrospira defluvii]
 gi|300606440|emb|CBK42773.1| Excinuclease ABC, subunit B [Candidatus Nitrospira defluvii]
          Length = 665

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/663 (54%), Positives = 476/663 (71%), Gaps = 18/663 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P GDQ  AI +L  GI + ++ Q LLGVTGSGKTFTMA V+E +Q+P +V+ 
Sbjct: 4   FKLDAPFKPCGDQGQAIEKLTSGILAGKQHQALLGVTGSGKTFTMANVVERVQKPTLVLV 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFPHNAVEYF+SYYDYYQPEAY+P++DTYI K++SIN+ ID+MRH
Sbjct: 64  HNKTLAGQLYQEFKQFFPHNAVEYFISYYDYYQPEAYIPQSDTYIAKDASINDAIDQMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT SLL+RND ++VSSVSCIYG+GS E Y  M+V L+ G    ++++L+ LV+ QY R 
Sbjct: 124 AATTSLLQRNDVLIVSSVSCIYGLGSPEVYHDMLVYLEEGMETRREKILAKLVEIQYARN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFR  GD IEIFP+  E  + R+ +FG+ ++ I E  PLTG+ +  +  I IY
Sbjct: 184 DVDFHRGTFRARGDVIEIFPASSEAKSVRIELFGDVVDAIHEIDPLTGKSLGKLPKIAIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            N+HY+        A+  I+EEL  R+   +K G+LLEAQR+EQR  +DLEM+   G C 
Sbjct: 244 PNTHYLIAPDRYERAITGIEEELDARVAAFKKNGQLLEAQRIEQRTKFDLEMIRAMGYCH 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PG+PPPTL +Y P+D LL VDESH T+PQ+ GMY GDF RK TL +Y
Sbjct: 304 GIENYSRHLSGRAPGDPPPTLLDYFPKDFLLIVDESHATVPQVGGMYEGDFSRKRTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  +    I VSATPG +ELE  +G ++EQIIRPTGL+DP ++
Sbjct: 364 GFRLPSAVDNRPLKFAEFERMLKQVIYVSATPGPYELEHAKGEVIEQIIRPTGLMDPLID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +RSA+ QV+++  E+   A +G R+L+T LTKRMAEDLTEY ++  ++VRY+HS++KTLE
Sbjct: 424 VRSAKGQVDNLLAEVRAEAAKGNRVLVTTLTKRMAEDLTEYYHDLGVKVRYLHSDIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS  SLIQT GRAAR
Sbjct: 484 RAEIIRDLRRGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSHRSLIQTAGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ +VI Y DTIT S++ A+DET RRR  Q  +N+ H I P+S+K++I     P+L  D
Sbjct: 544 NLDGRVIFYGDTITDSMRRAMDETARRRHIQEAYNEAHGITPESIKKQI-----PVL--D 596

Query: 741 AATTNISIDAQQLSLSKKKGKAH---------LKSLRKQMHLAADNLNFEEAARIRDEIK 791
            AT   + +  QL L+ +   A+         ++ L  +M  AA  L FE AA +R+ I+
Sbjct: 597 YATG--AGNEGQLELAAESADAYGATGDTEQLIRRLEVEMKAAAKKLEFERAAELRNRIR 654

Query: 792 RLK 794
            L+
Sbjct: 655 TLR 657


>gi|121635041|ref|YP_975286.1| excinuclease ABC subunit B [Neisseria meningitidis FAM18]
 gi|120866747|emb|CAM10500.1| excinuclease ABC subunit B [Neisseria meningitidis FAM18]
 gi|325142556|gb|EGC64956.1| excinuclease ABC, B subunit [Neisseria meningitidis 961-5945]
 gi|325198479|gb|ADY93935.1| excinuclease ABC, B subunit [Neisseria meningitidis G2136]
          Length = 675

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/663 (54%), Positives = 480/663 (72%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSLS----KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                      ++ +S    ++     +  L K M  AA +L FEEAA +RD I+ +K  
Sbjct: 610 DGGKGRRQGKNKVKVSEIHNEEDAVKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEG 669

Query: 797 PYF 799
             F
Sbjct: 670 LLF 672


>gi|77409684|ref|ZP_00786351.1| excinuclease ABC, B subunit [Streptococcus agalactiae COH1]
 gi|77171705|gb|EAO74907.1| excinuclease ABC, B subunit [Streptococcus agalactiae COH1]
          Length = 663

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/660 (54%), Positives = 481/660 (72%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           KD   F++ + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI  + +P
Sbjct: 5   KDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL++LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNNLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E FP+  ++ A+R+  FG++I+ I E   LTG+ +  VE
Sbjct: 185 QFERNDIDFQRGKFRVRGDVVEFFPASRDEHAFRIEFFGDEIDRIREIESLTGRVLGEVE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I+  +H++T    +  A+  I+ E++ ++   EKEG+L+EAQR+ QR  YD+EML  
Sbjct: 245 HLAIFPATHFMTNDEHMEEAISKIQAEMENQVELFEKEGKLIEAQRIRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKE 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L  YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ    +VEQIIRPTGL+
Sbjct: 365 MLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTD-TVVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R +  Q++D+  EINL  ++G R  +T LTKRMAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN N  VI+YAD IT S+Q A+DET RRR  Q+++N+KH I PQ++K++I ++I  
Sbjct: 544 GRAARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKEIRDLIAI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               D+      +D    SLSKK+ +A +K+L+KQM  AA+ L+FE AA+IRD I  LK+
Sbjct: 604 TKSNDSDKPEKVVDYS--SLSKKERQAKIKALQKQMQDAAELLDFELAAQIRDVILELKA 661


>gi|319794406|ref|YP_004156046.1| excinuclease ABC, b subunit [Variovorax paradoxus EPS]
 gi|315596869|gb|ADU37935.1| excinuclease ABC, B subunit [Variovorax paradoxus EPS]
          Length = 705

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/661 (54%), Positives = 481/661 (72%), Gaps = 4/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQP AI  L+ G+   E  Q LLGVTGSGKTFTMA VI  + RPAIV A
Sbjct: 33  FELFQPYPPAGDQPKAIQGLVDGVIDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIVFA 92

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I++MR 
Sbjct: 93  PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQMRL 152

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S+LER D ++V++VS IYGIG+ E Y+QM   +++GD + Q++++S L++ QY R 
Sbjct: 153 SATKSVLERRDTVIVATVSAIYGIGTPEDYTQMRFIMRVGDKIGQRDVISRLIRMQYTRN 212

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RGTFRV GD+I++FP+   ++A R+ +F ++IE +  F PLTG+  + +    +Y
Sbjct: 213 EQDFARGTFRVRGDTIDVFPAEHSELAIRIELFDDEIESLQLFDPLTGRIRQKIPRFTVY 272

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR  +  A++ IK EL  RL E   +G+L+EAQRLEQR  +DLEML   G C+
Sbjct: 273 PSSHYVTPRDKVLGAVETIKIELAERLKEFVSQGKLVEAQRLEQRTRFDLEMLAEIGHCK 332

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G  PG+PP TL +Y+P+D+L+F+DESH  I Q++ MY GD  RK TL EY
Sbjct: 333 GIENYSRHLSGAAPGDPPATLTDYLPKDALMFLDESHQMIGQLNAMYSGDRARKTTLVEY 392

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+FEE+       I VSATP  +E +   G +VEQ++RPTGL+DP VE
Sbjct: 393 GFRLPSAMDNRPLKFEEFEARVRQAIFVSATPAQYEKDHS-GNVVEQLVRPTGLIDPEVE 451

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DV  EI +  ++  R+L+T LTKRMAE LT+YL +  ++VRY+HS+V T+E
Sbjct: 452 VRPATHQVDDVLGEIRIRVEKNERVLITTLTKRMAEQLTDYLGDNGVKVRYLHSDVDTVE 511

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 512 RVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 571

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ K ILYAD +T S++ AIDET RRR +Q+ HN+ + I P+S+ +++ ++ID +  E 
Sbjct: 572 NLHGKAILYADRMTDSMKKAIDETERRRARQIAHNEANGITPRSIVKQVRDLIDGVYSEK 631

Query: 741 AATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                  +D   A+   +S+K     +K L K M   A NL FE+AAR+RD++  L+   
Sbjct: 632 TGKEMAKLDLERAKVEDMSEKDIAREIKRLEKLMLEHARNLEFEKAARVRDQLALLREQA 691

Query: 798 Y 798
           +
Sbjct: 692 F 692


>gi|325130430|gb|EGC53194.1| excinuclease ABC, B subunit [Neisseria meningitidis OX99.30304]
          Length = 675

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/667 (54%), Positives = 481/667 (72%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +        +Q     K G+ H        +  L K M  AA +L FEEAA +RD I+ 
Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665

Query: 793 LKSSPYF 799
           +K S  F
Sbjct: 666 IKESLLF 672


>gi|238759771|ref|ZP_04620929.1| UvrABC system protein B [Yersinia aldovae ATCC 35236]
 gi|238702003|gb|EEP94562.1| UvrABC system protein B [Yersinia aldovae ATCC 35236]
          Length = 670

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/660 (55%), Positives = 469/660 (71%), Gaps = 5/660 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +++ P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +V+
Sbjct: 4   IFKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SS+NE I++MR
Sbjct: 64  APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSVNEHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R
Sbjct: 124 LSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQYSR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E++S F PLTGQ    V    +
Sbjct: 184 NDQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVEKLSVFDPLTGQLQHEVPRFTV 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  AM+ IK EL  R   L    +LLE QR+ QR  +DLEM+   G C
Sbjct: 244 YPKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRIAQRTQFDLEMMNELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL E
Sbjct: 304 SGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRSRKETLVE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+    +++Q++RPTGL+DP +
Sbjct: 364 YGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGDEVIDQVVRPTGLLDPLI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+
Sbjct: 424 EVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLGEHGARVRYLHSDIDTV 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 484 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-----D 734
           RN+N K ILY D IT S++ AI ET RRR KQ  HN++H I PQ + +KI +++      
Sbjct: 544 RNLNGKAILYGDRITASMEKAIGETERRRVKQQIHNQEHGITPQGLNKKIGDILQLGKPS 603

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      ++      SL  K     ++ L  +M+  A NL FE+AA +RD++ +L+
Sbjct: 604 TRGKGKGRGGKVADTHDYQSLPPKALDQKIRELEAKMYTHAQNLEFEQAADLRDQVHQLR 663


>gi|55821473|ref|YP_139915.1| excinuclease ABC subunit B [Streptococcus thermophilus LMG 18311]
 gi|55823402|ref|YP_141843.1| excinuclease ABC subunit B [Streptococcus thermophilus CNRZ1066]
 gi|81820260|sp|Q5LYS1|UVRB_STRT1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|81820426|sp|Q5M3D5|UVRB_STRT2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|55737458|gb|AAV61100.1| excinuclease ABC subunit B [Streptococcus thermophilus LMG 18311]
 gi|55739387|gb|AAV63028.1| excinuclease ABC subunit B [Streptococcus thermophilus CNRZ1066]
          Length = 668

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/655 (54%), Positives = 481/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI+ + +P +V+A
Sbjct: 15  FHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIA 74

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 75  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 134

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  Q++R 
Sbjct: 135 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDIQFERN 194

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE + ++
Sbjct: 195 DIDFQRGKFRVRGDVVEIFPASRDENAFRVEFFGDEIDRICEIESLTGRNLGEVEHLVLF 254

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I EE+++++ + E EG+L+EAQR+ QR  YD+EML   G   
Sbjct: 255 PATHFMTNEEHMEEAIKNIMEEMEVQVNQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 314

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 315 GIENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDY 374

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +VEQIIRPTGL+DP VE
Sbjct: 375 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLLDPEVE 433

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R+ +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 434 VRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 493

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 494 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 553

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I      +
Sbjct: 554 NSDGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKTNE 613

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A     +++    +++KK+ +  +K L+KQMH AA+ L+FE AA+IRD +  LKS
Sbjct: 614 AEVAEDTVNYS--AMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLELKS 666


>gi|20808375|ref|NP_623546.1| excinuclease ABC subunit B [Thermoanaerobacter tengcongensis MB4]
 gi|22257068|sp|Q8R8M4|UVRB_THETN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|20516986|gb|AAM25150.1| Helicase subunit of the DNA excision repair complex
           [Thermoanaerobacter tengcongensis MB4]
          Length = 662

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/658 (55%), Positives = 479/658 (72%), Gaps = 12/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L++G+    + Q LLGVTGSGKTFTMA +I  + RP +V+A
Sbjct: 4   FKLVSNFKPTGDQPQAIEKLVEGVRRGYRYQTLLGVTGSGKTFTMANIIARLNRPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK++SINE+ID++RH
Sbjct: 64  HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPETDTYIEKDASINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G    Y  +++ L+ G   ++ E++  LV+ QY+R 
Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPIDYENLMLSLRPGMVKDRDEIIRKLVEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD IE+FP+   + A R+ +FG++I+ I+E   LTG+ +   + + I+
Sbjct: 184 DINFTRGKFRVRGDVIEVFPASFSNKAIRIELFGDEIDRIAEIDVLTGEVLGYRKHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T R  L  A+K I+EEL+ R  EL++ G+++EA+RL QR  YDLEML+  G C+
Sbjct: 244 PASHYATSRDKLERAIKSIREELEERYKELKEMGKIVEAERLWQRTNYDLEMLQEMGYCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++GR PG PP TL +Y PED L+F+DESHVTIPQ+ GMY GD  RK  L EY
Sbjct: 304 GIENYSRHISGRPPGSPPYTLLDYFPEDFLIFIDESHVTIPQLRGMYNGDRSRKEALVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I VSATPG +E+E  +  +VEQ+IRPTGLVDP V 
Sbjct: 364 GFRLPSAYDNRPLTFEEFEQRVNQVIFVSATPGPYEMEHSEQ-VVEQLIRPTGLVDPEVI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + QV+D+  EI     +G R+L+T LTK+MAEDL++YL E  IRVRY+HS+++T+E
Sbjct: 423 VRPVKGQVDDLIAEIRKTVAKGYRVLVTTLTKKMAEDLSDYLKEMGIRVRYLHSDIETIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           N   +VI+YADTIT S++ AIDET RRR+ Q+E+N+KH I P++V + + +VI    +  
Sbjct: 543 NAEGRVIMYADTITNSMRRAIDETNRRRKIQMEYNEKHGIVPKTVVKGVRDVIQATQVAE 602

Query: 739 --EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             E    T    D   +       K+ ++ L K+M  AA  L FE+AA++RD I  L+
Sbjct: 603 KEEKYEKTANFYDPDVI-------KSTIEQLEKEMRQAAIELQFEKAAKLRDMILELR 653


>gi|22537607|ref|NP_688458.1| excinuclease ABC subunit B [Streptococcus agalactiae 2603V/R]
 gi|25011573|ref|NP_735968.1| excinuclease ABC subunit B [Streptococcus agalactiae NEM316]
 gi|76797629|ref|ZP_00779899.1| excinuclease ABC, B subunit [Streptococcus agalactiae 18RS21]
 gi|77405185|ref|ZP_00782283.1| excinuclease ABC, B subunit [Streptococcus agalactiae H36B]
 gi|77414116|ref|ZP_00790283.1| excinuclease ABC, B subunit [Streptococcus agalactiae 515]
 gi|81845404|sp|Q8DYL6|UVRB_STRA5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|81845584|sp|Q8E471|UVRB_STRA3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|22534492|gb|AAN00331.1|AE014259_2 excinuclease ABC, B subunit [Streptococcus agalactiae 2603V/R]
 gi|24413112|emb|CAD47190.1| excinuclease ABC chain B [Streptococcus agalactiae NEM316]
 gi|76586990|gb|EAO63478.1| excinuclease ABC, B subunit [Streptococcus agalactiae 18RS21]
 gi|77159827|gb|EAO70971.1| excinuclease ABC, B subunit [Streptococcus agalactiae 515]
 gi|77176187|gb|EAO78958.1| excinuclease ABC, B subunit [Streptococcus agalactiae H36B]
          Length = 663

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/660 (54%), Positives = 482/660 (73%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           KD   F++ + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI  + +P
Sbjct: 5   KDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL++LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNNLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ +  VE
Sbjct: 185 QFERNDIDFQRGKFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGRVLGEVE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I+  +H++T    +  A+  I+ E++ ++   EKEG+L+EAQR+ QR  YD+EML  
Sbjct: 245 HLAIFPATHFMTNDEHMEEAISKIQAEMENQVELFEKEGKLIEAQRIRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKE 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L  YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ    +VEQIIRPTGL+
Sbjct: 365 MLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTD-TVVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R +  Q++D+  EINL  ++G R  +T LTKRMAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN N  VI+YAD IT S+Q A+DET RRR  Q+++N+KH I PQ++K++I ++I  
Sbjct: 544 GRAARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKEIRDLIAI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               D+      +D    SLSKK+ +A +K+L++QM  AA+ L+FE AA+IRD I  LK+
Sbjct: 604 TKSNDSDKPEKVVDYS--SLSKKERQAEIKALQQQMQEAAELLDFELAAQIRDVILELKA 661


>gi|317130269|ref|YP_004096551.1| excinuclease ABC subunit B [Bacillus cellulosilyticus DSM 2522]
 gi|315475217|gb|ADU31820.1| excinuclease ABC, B subunit [Bacillus cellulosilyticus DSM 2522]
          Length = 666

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/659 (55%), Positives = 482/659 (73%), Gaps = 3/659 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F++ + Y P GDQP AI +L++GI+  +K Q LLG TG+GKTFT++ VI+ +++P +V
Sbjct: 7   TGFELVSKYEPQGDQPQAIKELVEGINEGKKFQTLLGATGTGKTFTISNVIKEVKKPTLV 66

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P +DTYIEK++SIN++ID++
Sbjct: 67  IAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYIPHSDTYIEKDASINDEIDKL 126

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSAT SL ER D I+V+SVSCIYG+GS   YS+++V L++G   E+ +LL +LV  QY+
Sbjct: 127 RHSATSSLFERKDVIIVASVSCIYGLGSPTEYSELVVSLRVGMEKERNQLLRNLVDIQYE 186

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RGTFRV GD +EIFP+  ++   R+  FG++I+ I+E   LTG+ +       
Sbjct: 187 RNDINFTRGTFRVRGDVVEIFPASRDEHCLRIEFFGDEIDRITEVDALTGEILGERNHAA 246

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SH+VT    L  AM  I++EL+  L E+ ++G+LLEAQRLEQR  YDLEM++  G 
Sbjct: 247 IFPASHFVTREEKLKKAMVRIEQELEETLKEMNEKGKLLEAQRLEQRTRYDLEMMQEMGY 306

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+LT R  G  P TL +Y PED L+ VDESHVT+PQ+ GMY GD  RK  L 
Sbjct: 307 CSGIENYSRHLTFREAGATPYTLLDYFPEDFLIVVDESHVTLPQVRGMYNGDQARKGVLV 366

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS  DNRPL+FEE+      TI VSATPG +EL+ C   +VEQIIRPTGL+DP 
Sbjct: 367 DHGFRLPSAKDNRPLKFEEFEKHIHQTIFVSATPGPYELDICPK-MVEQIIRPTGLLDPT 425

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V++R    Q++D+ +EI L  ++  R+L+T LTK+M+EDLT+YL E  I VRY+HS++KT
Sbjct: 426 VDVRPIEGQIDDLIEEIRLRKERNERVLVTTLTKKMSEDLTDYLKEVGISVRYLHSDIKT 485

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LERI+IIR+LRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQT+GRA
Sbjct: 486 LERIQIIRELRLGHFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTMGRA 545

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN N  VI+YAD ITKS+ +AI ET RRRE Q E N+KH I PQ++++ + ++I     
Sbjct: 546 ARNANGHVIMYADKITKSMDIAIGETKRRREIQKEFNEKHGITPQTIQKAVPQLIQATYA 605

Query: 739 EDA--ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +A  A     + A +  LSKK+ +  ++ +  +M  AA NLNFE AA +RD I  LK+
Sbjct: 606 AEADEAYEVKEVAAPKQKLSKKEREKVIERMEMEMKDAAKNLNFERAAELRDVIIELKA 664


>gi|121604469|ref|YP_981798.1| excinuclease ABC subunit B [Polaromonas naphthalenivorans CJ2]
 gi|120593438|gb|ABM36877.1| Excinuclease ABC subunit B [Polaromonas naphthalenivorans CJ2]
          Length = 702

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/661 (54%), Positives = 479/661 (72%), Gaps = 4/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQP AIA+L++G+   E  Q LLGVTGSGKTFTMA VI  + RPAIV A
Sbjct: 28  FELFQPYLPAGDQPQAIAKLVEGVRDGEAFQTLLGVTGSGKTFTMANVIARLGRPAIVFA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR 
Sbjct: 88  PNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S+LER D I+V++VS IYGIG+ E Y+QM    + GD + Q+++++ L++ QY R 
Sbjct: 148 SATKSVLERRDTIIVATVSAIYGIGAPEDYTQMRFIARTGDKMGQRDVIARLIRMQYSRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RGTFRV GD I+IFP+   ++A R+ +F ++IE +  F PLTG+  + +    +Y
Sbjct: 208 EQDFSRGTFRVRGDVIDIFPAEHSELAIRIELFDDEIESLQLFDPLTGRIRQKIPRFVVY 267

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  +  A++ IK EL  R+ +   EG+L+EAQR+EQR  +DLEML   G C+
Sbjct: 268 PKSHYVTPRDKVLAAVETIKLELSERVGQFIAEGKLVEAQRIEQRTRFDLEMLGEIGHCK 327

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L+   PG  P TL +Y+P+DS++F+DESHV I Q++ MY GD  RK TL EY
Sbjct: 328 GIENYTRHLSASAPGSAPSTLCDYLPKDSVMFLDESHVMIGQLNAMYNGDRARKTTLVEY 387

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       I VSATP ++E E   G +VEQ++RPTGLVDP VE
Sbjct: 388 GFRLPSALDNRPLKFEEFESKVRQAIFVSATPAAYENEHA-GQVVEQLVRPTGLVDPQVE 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DV  EI +  +   R+L+T LTKRMAE LT+YL E  ++VRY+HS+V+T+E
Sbjct: 447 VRPATHQVDDVLQEIRIRVEINERVLITTLTKRMAEQLTDYLTENGVKVRYLHSDVETVE 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 507 RVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD +T S+++A+ ET RRR KQL  N  H I P+S+ ++I ++ID +  E 
Sbjct: 567 NLNGRAILYADRVTDSMKMAMGETERRRNKQLAFNTLHGITPRSIVKRIKDLIDGVYSEK 626

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +      ++ Q+     +S+K     +K L KQM   A NL FE+AAR+RD++  LK   
Sbjct: 627 SGKEAEKLEMQKALVEDMSEKDIAREIKRLEKQMVEHAKNLEFEKAARVRDQLHVLKQQA 686

Query: 798 Y 798
           +
Sbjct: 687 F 687


>gi|162448934|ref|YP_001611301.1| excinuclease ABC subunit B [Sorangium cellulosum 'So ce 56']
 gi|161159516|emb|CAN90821.1| excinuclease ABC, B subunit [Sorangium cellulosum 'So ce 56']
          Length = 719

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/659 (54%), Positives = 476/659 (72%), Gaps = 2/659 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F++ +++ P GDQP A+ ++       E  Q+LLGVTGSGKTFT AKVIE +Q+P ++
Sbjct: 3   THFELVSEFKPCGDQPRALQEICSAFEQGEAFQVLLGVTGSGKTFTAAKVIEKLQKPTLI 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E +  FP+NAV YFVSYYDYYQPEAYVP +DTYIEK++ IN+ IDRM
Sbjct: 63  MAPNKTLAAQLYGEMRELFPNNAVHYFVSYYDYYQPEAYVPTSDTYIEKDAIINDAIDRM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R D I+V+SVSCIYGIGS ESY  ++++L+ G  + + ELL  LV  QY 
Sbjct: 123 RHAATHALLSRPDVIIVASVSCIYGIGSAESYHGLLIKLERGTEIRRDELLRRLVDIQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RGTFRV GD +EIFP++ E +A RV  FG++IE I E  P+ G+ +  ++   
Sbjct: 183 RNDVDFHRGTFRVRGDVVEIFPAYEEALAIRVEFFGDEIEAIKEVDPVRGKVVGQLDRYA 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++  SHYVT +  L  A++ I+EEL+ R+   ++  R LE QR+EQR  YDLEMLE  G 
Sbjct: 243 VFPGSHYVTEQQQLRLAIQAIREELRERIDFYDRAVRFLEKQRIEQRTMYDLEMLEQMGF 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR  GEPPPTL +Y P+D LL +DESH T+PQ+  M+RGD  RK TL 
Sbjct: 303 CNGIENYSRHLSGRKAGEPPPTLIDYFPKDFLLIIDESHQTVPQVGAMFRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+       + VSATPG +EL++  G +VEQIIRPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEQHYAQVLFVSATPGDYELQKSAGSVVEQIIRPTGLIDPQ 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR    QV+D+   I     +G R+L+T LTKRMAEDLTEY  E  IRVRY+HS+V T
Sbjct: 423 IHIRPVSGQVDDLLARIRERVGRGDRVLVTTLTKRMAEDLTEYYTELGIRVRYLHSDVDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L+R+EI+RDLR G+FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 483 LQRVEILRDLRRGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSPRSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV+ +V++YAD IT++++ A+DET RRR  Q  +NK+H I P +VK+ I+++      
Sbjct: 543 ARNVHGEVVMYADRITEAMKRAMDETNRRRAIQEAYNKEHGITPATVKKAILDLSPTSGT 602

Query: 739 ED--AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            D  A     +  A + + +       + +LR++M  AA+NL FE+AAR+RD++++LK+
Sbjct: 603 RDYYAVPKGPAKPAAEAARAAVDLVDQIDALRQEMFAAAENLEFEKAARLRDQLRQLKA 661


>gi|124516185|gb|EAY57693.1| Exinuclease ABC, B subunit (UvrB) [Leptospirillum rubarum]
          Length = 701

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/658 (55%), Positives = 472/658 (71%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++   + PSGDQ  AI  L +G+ + +  Q LLGVTGSGKTFTMA VI+ +Q+P++++
Sbjct: 24  MFRLAAGFSPSGDQERAIDVLSEGVLAGKTHQTLLGVTGSGKTFTMANVIQRVQKPSLIL 83

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFP N VEYFVSYYDYYQPEAY+P TDTYIEK+S++N+ IDRMR
Sbjct: 84  APNKTLAAQLYREFKAFFPDNRVEYFVSYYDYYQPEAYIPSTDTYIEKDSAVNDLIDRMR 143

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT SLLER D IVV+SVSCIYG+GS ESY +M + L+ G ++ +++L+  LV  QY+R
Sbjct: 144 HAATSSLLERRDTIVVASVSCIYGLGSPESYQKMHLYLERGQTLTREKLIERLVTIQYQR 203

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RGTFRV GD ++I P+  ED A RV +FG++IE I E  PLTG ++  + ++ I
Sbjct: 204 NDIELSRGTFRVRGDVVDIIPASYEDRAIRVELFGDEIERIREMDPLTGHELAVIPSVII 263

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYV P   L+ AM  I+EEL  R+ E  + G+LLEAQR+EQR  +DLEM++  G C
Sbjct: 264 YPGTHYVLPPDELDRAMAGIEEELHARIREFRQSGKLLEAQRIEQRTLFDLEMIKEIGYC 323

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+GR  GEPPPTLF+Y P+D L+ VDESHV IPQ+ GMY GD+ RK +L E
Sbjct: 324 HGIENYSRHLSGRKAGEPPPTLFDYFPDDFLVIVDESHVAIPQVGGMYHGDYSRKKSLVE 383

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS  DNRPL+F E+      ++ VSATPG +EL    G+ VEQIIRPTGL DP +
Sbjct: 384 YGFRLPSAFDNRPLKFFEFEKTARQSLYVSATPGPYELRMSGGVTVEQIIRPTGLCDPEI 443

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+  A  QV+ +  EI     QG R+L+T LTK+MAE+LTEYL ER +RVRY+HSE+ TL
Sbjct: 444 EVVPATHQVDHLLGEIRTTVGQGDRVLVTTLTKKMAENLTEYLEERQVRVRYLHSEIDTL 503

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+RDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT GRAA
Sbjct: 504 ERMEILRDLRKGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSRRSLIQTAGRAA 563

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  +VI Y D +T S++ AI ET RRRE Q+ +N +  I P+ ++++I E +  +   
Sbjct: 564 RNVRGRVIFYGDKVTGSMEEAILETRRRREIQMAYNLERGITPRGIRKEIPESLYAVSEG 623

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           D    ++  + +   L K+        +RK M  AA +L FE+AA  RD ++     P
Sbjct: 624 DYVDVSLVEEVRGRLLEKEGDALPDGEIRKLMEKAASDLEFEKAAYYRDILRARGRDP 681


>gi|256959893|ref|ZP_05564064.1| excinuclease ABC [Enterococcus faecalis Merz96]
 gi|256964403|ref|ZP_05568574.1| excinuclease ABC [Enterococcus faecalis HIP11704]
 gi|293384724|ref|ZP_06630578.1| excinuclease ABC subunit B [Enterococcus faecalis R712]
 gi|293387464|ref|ZP_06632016.1| excinuclease ABC subunit B [Enterococcus faecalis S613]
 gi|307272574|ref|ZP_07553827.1| excinuclease ABC subunit B [Enterococcus faecalis TX0855]
 gi|312908577|ref|ZP_07767520.1| excinuclease ABC subunit B [Enterococcus faecalis DAPTO 512]
 gi|312910502|ref|ZP_07769347.1| excinuclease ABC subunit B [Enterococcus faecalis DAPTO 516]
 gi|256950389|gb|EEU67021.1| excinuclease ABC [Enterococcus faecalis Merz96]
 gi|256954899|gb|EEU71531.1| excinuclease ABC [Enterococcus faecalis HIP11704]
 gi|291077974|gb|EFE15338.1| excinuclease ABC subunit B [Enterococcus faecalis R712]
 gi|291083115|gb|EFE20078.1| excinuclease ABC subunit B [Enterococcus faecalis S613]
 gi|306510859|gb|EFM79876.1| excinuclease ABC subunit B [Enterococcus faecalis TX0855]
 gi|310625463|gb|EFQ08746.1| excinuclease ABC subunit B [Enterococcus faecalis DAPTO 512]
 gi|311289198|gb|EFQ67754.1| excinuclease ABC subunit B [Enterococcus faecalis DAPTO 516]
 gi|315170673|gb|EFU14690.1| excinuclease ABC subunit B [Enterococcus faecalis TX1342]
          Length = 665

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/656 (54%), Positives = 474/656 (72%), Gaps = 1/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQPAAIA+L+ G+   EK Q+LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 10  FHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCI+G+G    YSQ +V L++G  +++ ELL SLV  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E   LTG+ +   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETEHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+EEL+ RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D LL +DESHVT+PQI GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +V+QIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+Y  E  ++V+Y+HS++KTLE
Sbjct: 429 IRPIMGQIDDLVGEINERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FD+L+GINLLREG+D+PE  L+AILDADKEGFLRS+ SL+QT+GRAAR
Sbjct: 489 RTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD IT S+Q A+DET RRR  Q  +N++H I P+++ ++I ++I      D
Sbjct: 549 NAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTAD 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T + +D     LS+++    L  L ++M  AA  L+FE AA +RD I  LK++
Sbjct: 609 KDETVVQLDKSYEDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKAA 664


>gi|325201958|gb|ADY97412.1| excinuclease ABC, B subunit [Neisseria meningitidis M01-240149]
          Length = 675

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/667 (54%), Positives = 481/667 (72%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +        +Q     K G+ H        +  L K M  AA +L FEEAA +RD I+ 
Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDTIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665

Query: 793 LKSSPYF 799
           +K S  F
Sbjct: 666 IKESLLF 672


>gi|313668467|ref|YP_004048751.1| excinuclease ABC subunit B [Neisseria lactamica ST-640]
 gi|313005929|emb|CBN87386.1| excinuclease ABC subunit B [Neisseria lactamica 020-06]
          Length = 675

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/663 (54%), Positives = 481/663 (72%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ RND I+V++VS IYGIG    Y QM++ +K GD++ Q++++++LV  QY+R 
Sbjct: 131 SATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIAQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFTREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPKII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSLSKKKGK----AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +         ++ + + + +      +  L K M  AA +L FEEAA +RD I+ +K S
Sbjct: 610 DSGKGRRQGKNKVKVGEIRNEEDAIKEISKLEKAMQQAARDLQFEEAAVLRDRIQNIKES 669

Query: 797 PYF 799
             F
Sbjct: 670 MLF 672


>gi|76787746|ref|YP_330102.1| excinuclease ABC subunit B [Streptococcus agalactiae A909]
 gi|77411086|ref|ZP_00787440.1| excinuclease ABC, B subunit [Streptococcus agalactiae CJB111]
 gi|90111055|sp|Q3K051|UVRB_STRA1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|76562803|gb|ABA45387.1| UvrABC system, B protein [Streptococcus agalactiae A909]
 gi|77162909|gb|EAO73866.1| excinuclease ABC, B subunit [Streptococcus agalactiae CJB111]
          Length = 663

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/660 (54%), Positives = 482/660 (73%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           KD   F++ + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI  + +P
Sbjct: 5   KDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL++LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNNLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ +  VE
Sbjct: 185 QFERNDIDFQRGKFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGRVLGEVE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I+  +H++T    +  A+  I+ E++ ++   EKEG+L+EAQR+ QR  YD+EML  
Sbjct: 245 HLAIFPATHFMTNDEHMEEAISKIQAEMENQVELFEKEGKLIEAQRIRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKE 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L  YGFRLPS +DNRPLR EE+       + VSATPG +E+ Q    +VEQIIRPTGL+
Sbjct: 365 MLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMGQTD-TVVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R +  Q++D+  EINL  ++G R  +T LTKRMAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN N  VI+YAD IT S+Q A+DET RRR  Q+++N+KH I PQ++K++I ++I  
Sbjct: 544 GRAARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKEIRDLIAI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               D+      +D    SLSKK+ +A +K+L+KQM  AA+ L+FE AA+IRD I +LK+
Sbjct: 604 TKSNDSDKPEKVVDYS--SLSKKERQAEIKALQKQMQEAAELLDFELAAQIRDVILKLKA 661


>gi|91793153|ref|YP_562804.1| excinuclease ABC subunit B [Shewanella denitrificans OS217]
 gi|91715155|gb|ABE55081.1| Excinuclease ABC subunit B [Shewanella denitrificans OS217]
          Length = 676

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/665 (54%), Positives = 478/665 (71%), Gaps = 12/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   + P+GDQP AI +L++G+ +    Q LLGVTGSGKT+T+A VI+ M RP I+MA
Sbjct: 6   FDLHFPFPPAGDQPTAIRKLVEGLEAGLACQTLLGVTGSGKTYTIANVIKTMGRPTIIMA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++MR 
Sbjct: 66  PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQMRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QYKR 
Sbjct: 126 SATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDPMGQRDILHRLSELQYKRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + RGT+RV G+ I+IFP+  E  A RV +F ++IE +SEF PLTGQ  + +    +Y
Sbjct: 186 DIELSRGTYRVRGEVIDIFPADSERDAIRVELFDDEIERLSEFDPLTGQIKKRLARTTVY 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A ++IKEEL+ R   L    +L+EAQR+ +R+ YD+EM+   G C 
Sbjct: 246 PKTHYVTPREKIIAATEFIKEELRERRQHLLDNNKLIEAQRITERVQYDVEMMVELGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PG  PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK TL EY
Sbjct: 306 GIENYSRYLSGRTPGSAPPTLLDYLPSDGLLIIDESHVTVPQIGAMYKGDRSRKTTLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P T+ VSATP  +E ++  G I EQ++RPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLKFEEFEQLMPQTVFVSATPSQYEFDKSAGEIAEQVVRPTGLLDPVLE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  EI        R+L+T LTK+M+EDLT+YL E  ++VRY+HS++ T+E
Sbjct: 426 IRPVAIQVDDLLSEIAKRVAVNERVLVTTLTKKMSEDLTDYLDEHGVKVRYLHSDIDTVE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 486 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N KVILYAD +TKS+  AI+ET RRREKQ +HN  + I P+ V + I +V+D +  E+
Sbjct: 546 NINGKVILYADRVTKSMAKAIEETDRRREKQHQHNLANGITPKGVVKSITDVMD-VGDEN 604

Query: 741 AATTNISIDAQQLSLSKKKGKAH-----------LKSLRKQMHLAADNLNFEEAARIRDE 789
           + T           ++ K G+             ++ L KQM   A +L FE+AA +RDE
Sbjct: 605 STTGYRKTAPMPGKVASKPGQYDDLNSISELSRAIEKLEKQMLQHARDLEFEQAAALRDE 664

Query: 790 IKRLK 794
           +  L+
Sbjct: 665 VHALR 669


>gi|116628195|ref|YP_820814.1| excinuclease ABC subunit B [Streptococcus thermophilus LMD-9]
 gi|122267209|sp|Q03JK4|UVRB_STRTD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|116101472|gb|ABJ66618.1| Excinuclease ABC subunit B [Streptococcus thermophilus LMD-9]
          Length = 668

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 481/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI+ + +P +V+A
Sbjct: 15  FHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIA 74

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 75  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 134

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  Q++R 
Sbjct: 135 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDIQFERN 194

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE + ++
Sbjct: 195 DIDFQRGKFRVRGDVVEIFPASRDENAFRVEFFGDEIDRICEIESLTGRNLGEVEHLVLF 254

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I EE+++++ + E EG+L+EAQR+ QR  YD+EML   G   
Sbjct: 255 PATHFMTNEEHMEEAIKNIMEEMEVQVNQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 314

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 315 GIENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDY 374

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +VEQIIRPTGL+DP VE
Sbjct: 375 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLLDPEVE 433

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R+ +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 434 VRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 493

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 494 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 553

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I      +
Sbjct: 554 NSDGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKTNE 613

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A     +++    +++KK+ +  +K L+KQMH AA+ L+FE AA+IRD +  LKS
Sbjct: 614 AEVAEDTVNYS--AMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLELKS 666


>gi|322833786|ref|YP_004213813.1| excinuclease ABC, B subunit [Rahnella sp. Y9602]
 gi|321168987|gb|ADW74686.1| excinuclease ABC, B subunit [Rahnella sp. Y9602]
          Length = 668

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/657 (55%), Positives = 467/657 (71%), Gaps = 3/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ PSGDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHSEFKPSGDQPEAIRRLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I++FP+  +D+A R+ +F  ++E +S F PLTGQ    V    IY
Sbjct: 185 DQAFQRSTFRVRGEVIDVFPAESDDLALRIELFDQEVERLSLFDPLTGQVQHEVPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKVELADRRKVLLANNKLLEEQRISQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L P +I VSATPG +ELE+    +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQSIYVSATPGKYELEKSGDDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI        R+L+T LTKRMAEDLTEYL E   +VRY+HS++ T+E
Sbjct: 425 VRPVTTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N+N K ILY D IT S+  AI+ET RRR KQ  +N ++ I P  + +KI +++    P  
Sbjct: 545 NLNGKAILYGDKITNSMARAIEETERRRAKQEAYNLENGITPMGLNKKISDILQLGQPKT 604

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            ++    +        SL+ K  +  +K L  +M+  A NL FEEAA  RDE+  L+
Sbjct: 605 KKNKDKRDAEAAQTFKSLTPKALEQRIKELESKMYAHAQNLEFEEAANTRDELHALR 661


>gi|325847234|ref|ZP_08169986.1| excinuclease ABC, B subunit [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480918|gb|EGC83966.1| excinuclease ABC, B subunit [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 659

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/662 (54%), Positives = 483/662 (72%), Gaps = 8/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P GDQP AI +L  GI   +  Q+L GVTGSGKTFTMA +I+ +QRP +V+A
Sbjct: 6   FVIKSDYTPKGDQPQAIKKLADGIKEGKHHQILQGVTGSGKTFTMANIIQEVQRPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL++EFK FFP NAVEYFVSYYDYYQPEAYV  TDTYI K+SSIN++ID++RH
Sbjct: 66  HNKTLAYQLFTEFKEFFPDNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G  E Y ++++ L+ G  +   +++  L+++Q+ R 
Sbjct: 126 SATMSLFERRDVIIVASVSCIYGLGDPEEYKKLVLSLRPGQEISPDQVMKELIERQFVRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFR  GD ++IFP+  ++ A R+  FG++I+ ISEF  LTG+ I ++    IY
Sbjct: 186 DFDFSRGTFRKRGDVLDIFPAGNDEKAIRIEFFGDEIDRISEFDSLTGKVISHISHGYIY 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T       A+  IKEELK RL ELE E +L+EAQRLEQR  YD+EMLE  G C 
Sbjct: 246 PASHYATTAEKAEAAIVTIKEELKERLAELESENKLVEAQRLEQRTNYDIEMLEEIGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++ R PG  P TL +Y P+D +LFVDESHV+IPQ+ GMY GD  RK  L +Y
Sbjct: 306 GIENYSRHMSQREPGSRPATLIDYFPDDFVLFVDESHVSIPQVGGMYEGDRSRKQNLVDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+  L   T+ VSATPG +E+E+  G +VEQIIRPTGL+DP ++
Sbjct: 366 GFRLPSALDNRPLKFKEFEKLINQTVYVSATPGPYEMEKTGGEVVEQIIRPTGLLDPLID 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ + I+   ++  R+L+T LTKRMAEDLT+YL E  I+V+Y+HS++KT+E
Sbjct: 426 VKPVENQIDDLIENIHQTIEKKERVLVTTLTKRMAEDLTDYLSENGIKVKYLHSDIKTIE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLGKFDVLVGINLLREGLD+PE  L+AILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 486 RSEIIRDLRLGKFDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT+S++ AI+ET RRR+ Q E NKKH I P ++K+ I E+I   + E 
Sbjct: 546 NSEGHVIMYADKITRSMKKAIEETERRRKIQTEFNKKHGITPTTIKKNIAEIIQ--VTEK 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
           A  T+     ++   S ++ +  L +L  +M+ AA+ L+FE+AA +RD+I ++K    F 
Sbjct: 604 AENTS----EEKEEFSPEQVENILINLESEMYKAAEELDFEKAASLRDQIAKMKRD--FA 657

Query: 801 GL 802
           G+
Sbjct: 658 GI 659


>gi|319745424|gb|EFV97731.1| excision endonuclease subunit UvrB [Streptococcus agalactiae ATCC
           13813]
          Length = 663

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/660 (54%), Positives = 482/660 (73%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           KD   F++ + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI  + +P
Sbjct: 5   KDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVITQVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL++LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNNLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ +  VE
Sbjct: 185 QFERNDIDFQRGKFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGRVLGEVE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I+  +H++T    +  A+  I+ E++ ++   EKEG+L+EAQR+ QR  YD+EML  
Sbjct: 245 HLAIFPATHFMTNDEHMEEAISKIQAEMENQVELFEKEGKLIEAQRIRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKE 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L  YGFRLPS +DNRPLR EE+       + VSATPG +E+ Q    +VEQIIRPTGL+
Sbjct: 365 MLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMGQTD-TVVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R +  Q++D+  EINL  ++G R  +T LTKRMAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN N  VI+YAD IT S+Q A+DET RRR  Q+++N+KH I PQ++K++I ++I  
Sbjct: 544 GRAARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKEIRDLIAI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               D+      +D    SLSKK+ +A +K+L+KQM  AA+ L+FE AA+IRD I +LK+
Sbjct: 604 TKSNDSDKPEKIVDYS--SLSKKERQAEIKALQKQMQEAAELLDFELAAQIRDVILKLKA 661


>gi|304387358|ref|ZP_07369550.1| excision endonuclease subunit UvrB [Neisseria meningitidis ATCC
           13091]
 gi|304338609|gb|EFM04727.1| excision endonuclease subunit UvrB [Neisseria meningitidis ATCC
           13091]
          Length = 716

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/663 (54%), Positives = 480/663 (72%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 52  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 111

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 112 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 171

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 172 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 231

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    ++
Sbjct: 232 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 291

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G C+
Sbjct: 292 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 351

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 352 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 411

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 412 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 470

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 471 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 530

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 531 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 590

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 591 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 650

Query: 741 AATTNISIDAQQLSLS----KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                      ++ +S    ++     +  L K M  AA +L FEEAA +RD I+ +K  
Sbjct: 651 DGGKGRRQGKNKVKVSEIHNEEDAVKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEG 710

Query: 797 PYF 799
             F
Sbjct: 711 LLF 713


>gi|256545641|ref|ZP_05472998.1| excinuclease ABC, B subunit [Anaerococcus vaginalis ATCC 51170]
 gi|256398617|gb|EEU12237.1| excinuclease ABC, B subunit [Anaerococcus vaginalis ATCC 51170]
          Length = 659

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/654 (55%), Positives = 480/654 (73%), Gaps = 6/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P GDQP AI +L  GI + +  Q+L GVTGSGKTFTMA +I+ +Q+P +V+A
Sbjct: 6   FILKSDYTPKGDQPDAIKKLACGIKNGKAHQILQGVTGSGKTFTMANIIQEVQKPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL++EFK FFP NAVEYFVSYYDYYQPEAYV  TDTYI K+SSIN++ID++RH
Sbjct: 66  HNKTLAYQLFTEFKEFFPDNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G  E Y ++++ L+ G  +  +E++  L+++Q+ R 
Sbjct: 126 SATMSLFERRDVIIVASVSCIYGLGDPEEYRKLVLSLRPGQEISPEEVMKELIERQFVRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFR  GD ++IFP+  E+ A RV  FG++I+ ISEF  LTG+   ++    IY
Sbjct: 186 DFDFSRGTFRRRGDVLDIFPAGNEEKAIRVEFFGDEIDRISEFDSLTGKVTSHISHGYIY 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T       A+  IKEELK RL+ELE E +L+EAQRLEQR  YD+EMLE  G C 
Sbjct: 246 PASHYATSAEKAAAAITTIKEELKERLVELENENKLVEAQRLEQRTNYDIEMLEEIGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R PG  P TL +Y P+D +LFVDESHV+IPQ+ GMY GD  RK  L ++
Sbjct: 306 GIENYSRHLSQREPGSRPYTLIDYFPDDFMLFVDESHVSIPQVGGMYEGDRSRKQNLVDF 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L   TI VSATPG +E+E+  G ++EQIIRPTGL+DP ++
Sbjct: 366 GFRLPSALDNRPLKFPEFEKLIKQTIYVSATPGPYEMEKTGGKVIEQIIRPTGLLDPLID 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ + I+    +  R+L+T LTKRMAEDLT+YL E  I+V+Y+HS++KT+E
Sbjct: 426 VRPVENQIDDLIENIHQIIDKNERVLVTTLTKRMAEDLTDYLSENGIKVKYLHSDIKTIE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLGKFDVLVGINLLREGLD+PE  L+AILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 486 RSEIIRDLRLGKFDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT+S++ AIDET RRR+ Q E N+KH I P ++K+ I E+I       
Sbjct: 546 NSKGHVIMYADKITRSMKKAIDETERRRKIQTEFNEKHGITPTTIKKNIAEII------Q 599

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              +  +++  +   S+++ +  + +L  +M+ AA+ L+FE+AA+IRD+I ++K
Sbjct: 600 VTKSTENVEEVKEEFSQEQIENIIINLETEMYKAAEELDFEKAAQIRDQIAKMK 653


>gi|148653352|ref|YP_001280445.1| excinuclease ABC subunit B [Psychrobacter sp. PRwf-1]
 gi|148572436|gb|ABQ94495.1| Excinuclease ABC subunit B [Psychrobacter sp. PRwf-1]
          Length = 705

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/663 (55%), Positives = 480/663 (72%), Gaps = 9/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M TD+ P+GDQP AI +L+KG+ +    QLLLGVTGSGKT+TMAKVI   QRP I+MA
Sbjct: 40  FEMVTDFEPAGDQPQAIEKLVKGVEAGMDAQLLLGVTGSGKTYTMAKVISETQRPTIIMA 99

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYV  +DT+IEK+S+IN+ ID+MR 
Sbjct: 100 HNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDSAINDHIDQMRL 159

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I++SSVS IYG+G  ESY +M++ + +GD V++  L+  LV  QY R 
Sbjct: 160 SATRALLERRDAIIISSVSSIYGLGDPESYLKMLLHIVVGDVVDRNALIKRLVALQYTRN 219

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGT+R+ G+ ++I+P+  E +A R+SMF +++E+IS F PLTG+ +R+V  I IY
Sbjct: 220 ELDFERGTYRLRGELLDIYPAESEQLAVRISMFDDEVEKISWFDPLTGKTVRSVPRITIY 279

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  L  A K I+ EL  RL       +L+EAQR+++R  YDLEM++  G C 
Sbjct: 280 PKSHYVTPREKLEAASKTIRAELDDRLEYFRANDKLIEAQRIKERTQYDLEMIQQLGYCN 339

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS++L+GR  GE PPTLF+YIP D+LLF+DESHVT+PQI  MY+GD  RK  L  Y
Sbjct: 340 GIENYSQHLSGRPAGEAPPTLFDYIPPDALLFIDESHVTVPQIGAMYKGDRSRKENLVNY 399

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRP++FEEW  ++P TI VSATP  +ELE  +  IVEQ++RPTGL+DP +E
Sbjct: 400 GFRLPSAMDNRPMKFEEWERIKPATIFVSATPAQYELENSEQ-IVEQVVRPTGLIDPEIE 458

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+DV  EI        R+L+T LTKRM+EDLT+YL E +++V Y+HS++ T+E
Sbjct: 459 IRPVLTQVDDVLSEITKRRDVNERVLITTLTKRMSEDLTDYLKEYDVKVAYLHSDIDTVE 518

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G  DVLVGINLLREGLD+PE  LVAI DADKEGFLRS+ SLIQTIGRAAR
Sbjct: 519 RMQIIHELRTGVHDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERSLIQTIGRAAR 578

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD IT S+Q AI+ET RRREKQ+  NK+H I P+S    I + ID   +E+
Sbjct: 579 NLNGKAILYADKITPSMQKAIEETDRRREKQIAFNKEHGITPKSATRSITDKIDTGEVEE 638

Query: 741 AATTNISIDAQ--------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
               N  I +         ++  S       +  L KQM   +  L FE+AA++RD++  
Sbjct: 639 DVNDNQPIPSSSGLPDVDIEILRSPDLLAKEINRLEKQMKQFSRELKFEDAAKVRDKVLA 698

Query: 793 LKS 795
           L++
Sbjct: 699 LRA 701


>gi|332974352|gb|EGK11281.1| excision endonuclease subunit UvrB [Psychrobacter sp. 1501(2011)]
          Length = 705

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/663 (55%), Positives = 482/663 (72%), Gaps = 9/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M TD+ P+GDQP AI +L+KGI +    QLLLGVTGSGKT+TMAKVI   QRP I+MA
Sbjct: 40  FEMVTDFEPAGDQPQAIEKLVKGIEAGMDAQLLLGVTGSGKTYTMAKVISETQRPTIIMA 99

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYV  +DT+IEK+S+IN+ ID+MR 
Sbjct: 100 HNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDSAINDHIDQMRL 159

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I++SSVS IYG+G  ESY +M++ + +GD V++  L+  LV  QY R 
Sbjct: 160 SATRALLERRDAIIISSVSSIYGLGDPESYLKMLLHIVVGDVVDRNALIKRLVALQYTRN 219

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGT+R+ G+ ++I+P+  E +A R+SMF +++E+IS F PLTG+ +R+V  I IY
Sbjct: 220 ELDFERGTYRLRGELLDIYPAESEQLAVRISMFDDEVEKISWFDPLTGKTVRSVPRITIY 279

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  L  A K I+ EL  RL       +L+EAQR+++R  YDLEM++  G C 
Sbjct: 280 PKSHYVTPREKLEAASKTIRAELDERLEYFRANDKLIEAQRIKERTQYDLEMIQQLGYCN 339

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS++L+GR  GE PPTLF+YIP D+LLF+DESHVT+PQI  MY+GD  RK  L  Y
Sbjct: 340 GIENYSQHLSGRPAGEAPPTLFDYIPPDALLFIDESHVTVPQIGAMYKGDRSRKENLVNY 399

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRP++FEEW  ++PTTI VSATP  +ELE  +  IVEQ++RPTGL+DP +E
Sbjct: 400 GFRLPSAMDNRPMKFEEWEKIKPTTIFVSATPAQYELEHSEQ-IVEQVVRPTGLIDPEIE 458

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+DV  EI    +   R+L+T LTKRM+EDLT+YL E +++V Y+HS++ T+E
Sbjct: 459 IRPVLTQVDDVLSEITKRREVNERVLITTLTKRMSEDLTDYLKEYDVKVAYLHSDIDTVE 518

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G  DVLVGINLLREGLD+PE  LVAI DADKEGFLRS+ SLIQTIGRAAR
Sbjct: 519 RMQIIHELRTGVHDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERSLIQTIGRAAR 578

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD IT S++ AI+ET RRREKQ+  N +H I P+S    I + ID   +E+
Sbjct: 579 NLNGKAILYADKITPSMEKAIEETDRRREKQIAFNLEHGIMPKSATRSITDKIDTGEVEE 638

Query: 741 AATTNISIDAQ--------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
               N +I +         ++  S       +  L KQM   +  L FE+AA++RD++  
Sbjct: 639 DLNDNQAIPSSSGLPDVDIEILRSPDLLAKEINRLEKQMKQFSRELKFEDAAKVRDKVLE 698

Query: 793 LKS 795
           L++
Sbjct: 699 LRA 701


>gi|300862294|ref|ZP_07108374.1| excinuclease ABC, B subunit [Enterococcus faecalis TUSoD Ef11]
 gi|300848819|gb|EFK76576.1| excinuclease ABC, B subunit [Enterococcus faecalis TUSoD Ef11]
 gi|315145264|gb|EFT89280.1| excinuclease ABC subunit B [Enterococcus faecalis TX2141]
 gi|315161962|gb|EFU05979.1| excinuclease ABC subunit B [Enterococcus faecalis TX0645]
          Length = 665

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/656 (54%), Positives = 474/656 (72%), Gaps = 1/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQPAAIA+L+ G+   EK Q+LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 10  FHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCI+G+G    YSQ +V L++G  +++ ELL SLV  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E   LTG+ +   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETEHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+EEL+ RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D LL +DESHVT+PQI GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +V+QIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+Y  E  ++V+Y+HS++KTLE
Sbjct: 429 IRPIMGQIDDLVGEINERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FD+L+GINLLREG+D+PE  L+AILDADKEGFLRS+ SL+QT+GRAAR
Sbjct: 489 RTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD IT S+Q A+DET RRR  Q  +N++H I P+++ ++I ++I      D
Sbjct: 549 NAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTAD 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T + +D     LS+++    L  L ++M  AA  L+FE AA +RD I  LK++
Sbjct: 609 KDETVVQLDKSYEDLSRQEKADLLLKLEREMKDAAKALDFETAATLRDTILELKAA 664


>gi|238785218|ref|ZP_04629210.1| UvrABC system protein B [Yersinia bercovieri ATCC 43970]
 gi|238713896|gb|EEQ05916.1| UvrABC system protein B [Yersinia bercovieri ATCC 43970]
          Length = 680

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/659 (55%), Positives = 470/659 (71%), Gaps = 5/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 15  FKLHSEFKPAGDQPDAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 74

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 75  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 134

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 135 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSRN 194

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ    V    +Y
Sbjct: 195 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTVY 254

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QR+ QR  +DLEM+   G C 
Sbjct: 255 PKTHYVTPRERILQAMEEIKVELAERRKVLLDNNKLLEEQRIAQRTQFDLEMMNELGYCS 314

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 315 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 374

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+    P TI VSATPG +ELE+  G I+EQ++RPTGL+DP +E
Sbjct: 375 GFRLPSALDNRPMRFEEFEASAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIE 434

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 435 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLTEHGARVRYLHSDIDTVE 494

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 495 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 554

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----PI 736
           N+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +KI +++       
Sbjct: 555 NLNGKAILYGDRITASMEKAISETERRRAKQQAYNEERGIIPQGLNKKIGDLLQLGQPST 614

Query: 737 LLEDAATTNISIDAQQ-LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             +       + D    +SL  K     ++ L  +M+  A NL FE+AA +RD++ +L+
Sbjct: 615 RGKGKGRGGKAADPNNYMSLPPKALDQKIRELEAKMYTYAQNLEFEQAAELRDQVHQLR 673


>gi|225630549|ref|YP_002727340.1| excinuclease ABC, subunit B [Wolbachia sp. wRi]
 gi|225592530|gb|ACN95549.1| excinuclease ABC, subunit B [Wolbachia sp. wRi]
          Length = 637

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/647 (55%), Positives = 468/647 (72%), Gaps = 17/647 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI  L+ G++S ++ Q+LLGVTGSGKTFTMA VI    RPA++MA
Sbjct: 3   FQIATHFQPAGDQPQAIDSLIAGLNSNKRDQVLLGVTGSGKTFTMANVIARTNRPALIMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K  FPHNAVEYF+SYYDYYQPEAY+P+TDTYIEK+S+INE+I+ +R+
Sbjct: 63  HNKTLAAQLYEEMKGLFPHNAVEYFISYYDYYQPEAYLPQTDTYIEKDSAINERIEMLRY 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S   SLLER D IVV+SVSCIYG+GS ESY  MI+ L +G+ +   + LS+L   QYKR 
Sbjct: 123 STVCSLLERRDTIVVASVSCIYGLGSPESYRSMIIPLSVGNKIRINDFLSNLTDLQYKRS 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD ++IF SH E+ AWR+S+FG++IEEISE   +TG   + V  I I+
Sbjct: 183 DARFERGYFRVRGDIVDIFLSHYENKAWRLSLFGDEIEEISEVDAITGNVTKGVNKITIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NS+Y+TPR  L  A++ +K+EL  RL     + +++EA+RLEQR  +D+EM+ TTG C+
Sbjct: 243 PNSYYITPREALLQAIELVKKELHERLDYYYSQNKIVEAKRLEQRTNFDIEMMRTTGICK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL G   G+PPPTLFEY+P+D +LFVDESHVT+PQ+  MY G+  RK  L +Y
Sbjct: 303 GIENYSRYLYGMEAGDPPPTLFEYLPKDVILFVDESHVTVPQVGAMYSGNEARKKKLIDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEEW  +RP T+ +SATPG +EL +   + +EQ+IRPTGL DP   
Sbjct: 363 GFRLPSAFDNRPLKFEEWEGVRPQTVYISATPGKYELAKTNNVFIEQVIRPTGLTDPICI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++   +Q++DV  E  +   +G  +L+T LTK+MAE+L EY+ E N++V Y+HS++  LE
Sbjct: 423 VKPIESQIDDVIHEAQVTIGKGFCVLITTLTKKMAENLAEYMSELNMKVSYLHSDIAALE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII  LR  + DVLVG+NLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RIEIIYKLRSKEIDVLVGVNLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VILYAD IT S+  A+ ET RRR+KQ EHN  HNI P+++ + I   +       
Sbjct: 543 NAEGRVILYADKITGSLDRALRETERRRKKQEEHNILHNIIPKTIIKPISNTL------- 595

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                     Q+ ++++ K   +   LRKQM   A+NL FEEAARI+
Sbjct: 596 ----------QERAIAEPKVNTNKDDLRKQMIEHAENLEFEEAARIK 632


>gi|59711543|ref|YP_204319.1| excinuclease ABC subunit B [Vibrio fischeri ES114]
 gi|75507048|sp|Q5E6B5|UVRB_VIBF1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|59479644|gb|AAW85431.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Vibrio fischeri ES114]
          Length = 676

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/668 (54%), Positives = 484/668 (72%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ ++Y P+GDQP AI  L +G+ +    Q LLGVTGSGKTFT+A VI    RP I+MA
Sbjct: 5   YELVSNYQPAGDQPQAIKTLNEGLENGLAHQTLLGVTGSGKTFTLANVIAHSGRPTIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYFVSY+DYYQPEAYVP TDT+IEK+SS+NE I++MR 
Sbjct: 65  HNKTLAAQLYGEMKAFFPNNAVEYFVSYFDYYQPEAYVPTTDTFIEKDSSVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+++SVS IYG+G  ++Y  MI+ L+ GD + Q+++L  L + QYKR 
Sbjct: 125 SATKALLERKDAIIIASVSAIYGLGDPKAYLSMILHLRRGDIINQRDMLRRLAELQYKRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RGTFRV G+ ++IFP+  E  A R+ MF +++E IS+F PLTG  I +++    I
Sbjct: 185 DMAFERGTFRVRGEVLDIFPAESEHEAIRIEMFDDEVERISKFDPLTGSIITKDMPRCTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK +L +R  EL +  +L+E QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPREQVLDAIEKIKVDLAIRQKELLENNKLVEEQRITQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GE PPTLF+Y+P+D LL +DESH+T+ QI  MY+GD  RK  L E
Sbjct: 305 SGIENYSRYLSGRPEGEAPPTLFDYLPQDGLLIIDESHITVSQIGAMYKGDRSRKENLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+  L P TI VSATPG +E+E+  G I EQ++RPTGL+DP +
Sbjct: 365 YGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYEIEKSDGEIAEQVVRPTGLLDPVI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI +  +   R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRTKNNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K ILYAD IT S++ AI ET RRREKQ  HN+   I PQ++K+ + ++++   L 
Sbjct: 545 RNLEGKAILYADKITGSMEKAIGETERRREKQQLHNETLGIVPQALKKDVADILE---LG 601

Query: 740 DAATTNISIDAQQLSLSK--KKGKAH-----------LKSLRKQMHLAADNLNFEEAARI 786
           D       + A ++ LS+  ++G ++           ++ L  +M+  A +L FE+AA++
Sbjct: 602 DMTKNKRKVVAPKIKLSEVAEEGASYSAMSPQQLEKAIQKLESKMYQHAKDLEFEQAAQV 661

Query: 787 RDEIKRLK 794
           RDEI  L+
Sbjct: 662 RDEIDNLR 669


>gi|33596640|ref|NP_884283.1| excinuclease ABC subunit B [Bordetella parapertussis 12822]
 gi|81836644|sp|Q7W8V6|UVRB_BORPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|33573341|emb|CAE37325.1| excinuclease ABC subunit B [Bordetella parapertussis]
          Length = 675

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/662 (55%), Positives = 475/662 (71%), Gaps = 1/662 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   Y P+GDQP AI  L +G+      Q LLGVTGSGKT+TMA +I  + RPA+V+A
Sbjct: 14  FHLYQPYPPAGDQPGAIDALTEGVSDGLMFQTLLGVTGSGKTYTMANMIARLGRPALVLA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++MR 
Sbjct: 74  PNKTLAAQLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRL 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER D ++V +VSCIYGIG+   Y  M++ L+ GD + ++E+L+ LV  QY R 
Sbjct: 134 SATKSLLERRDTVIVGTVSCIYGIGNPGDYHAMVLILRTGDRISRREVLARLVAMQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV G++I+IFP+   ++A R+++F ++IE +  F PLTG+  + +    +Y
Sbjct: 194 DADFTRGVFRVRGETIDIFPAESPELALRLTLFDDEIESLELFDPLTGRVRQKLPRFTVY 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR T+  A++ IKEEL+ RL +L  +G+L+EAQRLEQR  +DLEML+  G C+
Sbjct: 254 PGSHYVTPRETVLRAIETIKEELRERLAQLIADGKLVEAQRLEQRTRFDLEMLQELGFCK 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHVTI Q+ GMYRGD  RK TL +Y
Sbjct: 314 GIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQLGGMYRGDRSRKETLVQY 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATP ++E E     +VEQ++RPTGLVDP VE
Sbjct: 374 GFRLPSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHADN-VVEQVVRPTGLVDPIVE 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI+  A    R+L+T LTKRMAEDLT++L E  +RVRY+HS++ T+E
Sbjct: 433 VRPAHTQVDDLLGEIHKRAALQERVLVTTLTKRMAEDLTDFLSEHGVRVRYLHSDIDTVE 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGI+LLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 493 RVEIIRDLRLGVFDVLVGISLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD IT S++ AIDET RRR KQ++HN  H I  + V + + E+ID ++   
Sbjct: 553 NLNGRAILYADRITDSMRRAIDETERRRAKQIQHNTDHGITARGVSKAVRELIDGVVAPA 612

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
                 S    ++   +K     ++ L K M   A NL FE+AA  RD +  LKS     
Sbjct: 613 GHDALESAVPAEVLTDEKAMAREIRRLEKLMMDHARNLEFEQAAAARDALNALKSRLLLD 672

Query: 801 GL 802
           G+
Sbjct: 673 GV 674


>gi|161870204|ref|YP_001599374.1| excinuclease ABC subunit B [Neisseria meningitidis 053442]
 gi|161595757|gb|ABX73417.1| excinuclease ABC subunit B [Neisseria meningitidis 053442]
          Length = 716

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/667 (54%), Positives = 481/667 (72%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 52  FKLHQPFQPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 111

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 112 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 171

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ RND I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 172 SATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 231

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    ++
Sbjct: 232 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 291

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 292 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 351

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 352 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 411

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P TI VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 412 GFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 470

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G RIL+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 471 IRPVATQVDDLMSEINDRIQKGERILVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 530

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 531 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 590

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 591 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 650

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +        +Q     K G+ H        +  L K M  AA +L FEEA+ +RD I+ 
Sbjct: 651 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEASVLRDRIRG 706

Query: 793 LKSSPYF 799
           ++    F
Sbjct: 707 IREGLLF 713


>gi|261341364|ref|ZP_05969222.1| excinuclease ABC subunit B [Enterobacter cancerogenus ATCC 35316]
 gi|288316674|gb|EFC55612.1| excinuclease ABC subunit B [Enterobacter cancerogenus ATCC 35316]
          Length = 671

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/662 (55%), Positives = 478/662 (72%), Gaps = 10/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTG     ++   +Y
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDMALRVELFDEEVERLSLFDPLTGHIESVIQRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEDIKAELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGE PPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGEDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + +    R+L+T LTKRMAEDLTEYL E   +VRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRIRSAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTNIS--------IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            A T           ++   ++L+ K  +  +  L  QM   A NL FEEAA+IRD++ +
Sbjct: 603 IAKTKTKGRGKARPVVEEDTVALTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQ 662

Query: 793 LK 794
           L+
Sbjct: 663 LR 664


>gi|312278810|gb|ADQ63467.1| excinuclease ABC subunit B [Streptococcus thermophilus ND03]
          Length = 663

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/655 (54%), Positives = 481/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI+ + +P +V+A
Sbjct: 10  FHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE + ++
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDENAFRVEFFGDEIDRICEIESLTGRNLGEVEHLVLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I EE+++++ + E EG+L+EAQR+ QR  YD+EML   G   
Sbjct: 250 PATHFMTNEEHMEEAIKNIMEEMEVQVNQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R+ +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I      +
Sbjct: 549 NSDGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKTNE 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A     +++    +++KK+ +  +K L+KQMH AA+ L+FE AA+IRD +  LKS
Sbjct: 609 AEVAEDTVNY--CAMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLELKS 661


>gi|325134430|gb|EGC57075.1| excinuclease ABC, B subunit [Neisseria meningitidis M13399]
          Length = 699

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/663 (54%), Positives = 480/663 (72%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 35  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 94

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 95  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 154

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 155 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 214

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    ++
Sbjct: 215 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 274

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A   IKEEL+ R+    KE R +E QR+EQR  +DLEML   G C+
Sbjct: 275 PSSHYVTPRDTVLRACDSIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 334

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 335 GIENYSRHFSGKKEGEPPPTLMDYLPSNTIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 394

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 395 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 453

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 454 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 513

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 514 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 573

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 574 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 633

Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +        ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K +
Sbjct: 634 DGSKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRDIKEN 693

Query: 797 PYF 799
             F
Sbjct: 694 LLF 696


>gi|325138246|gb|EGC60815.1| excinuclease ABC, B subunit [Neisseria meningitidis ES14902]
          Length = 675

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/663 (54%), Positives = 479/663 (72%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ + +  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSSKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSLS----KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                      ++ +S    ++     +  L K M  AA +L FEEAA +RD I+ +K  
Sbjct: 610 DGGKGRRQGKNKVKVSEIHNEEDAVKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEG 669

Query: 797 PYF 799
             F
Sbjct: 670 LLF 672


>gi|261381261|ref|ZP_05985834.1| excinuclease ABC subunit B [Neisseria subflava NJ9703]
 gi|284795734|gb|EFC51081.1| excinuclease ABC subunit B [Neisseria subflava NJ9703]
          Length = 675

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/663 (54%), Positives = 482/663 (72%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P TI VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                      ++ +    +++     +  L K M  AA +L FEEAA +RD+I+ +K +
Sbjct: 610 DGGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDKIRGIKEN 669

Query: 797 PYF 799
             F
Sbjct: 670 LLF 672


>gi|269958372|ref|YP_003328159.1| excinuclease ABC subunit B [Anaplasma centrale str. Israel]
 gi|269848201|gb|ACZ48845.1| excinuclease ABC subunit B [Anaplasma centrale str. Israel]
          Length = 652

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/655 (54%), Positives = 477/655 (72%), Gaps = 8/655 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ PSGDQP AI  L++GI    K Q LLGVTGSGKTFTMA VIE  QRPA+++A
Sbjct: 4   FKISSEFEPSGDQPGAIDVLVRGISHGVKEQTLLGVTGSGKTFTMASVIERTQRPAVIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+ E ++FFP NAVEYFVSYYDYYQPEAY+P++D YIEK++ IN++ID +RH
Sbjct: 64  HNKTLAAQLHEEMRSFFPENAVEYFVSYYDYYQPEAYIPQSDVYIEKDALINDKIDLLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D IVV+SVSCIYG+GS E YS+M + + +G  ++  +L   LV+ QYKR 
Sbjct: 124 SATRSLLERRDVIVVASVSCIYGLGSPELYSEMTIPVVLGMKLDMCQLQEKLVELQYKRS 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RG+F V GD++ +FPSH ED  W++S FG++++ I E  P +G     ++ IKI+
Sbjct: 184 NRHE-RGSFNVQGDALSVFPSHYEDRVWKISFFGDEVDSIQEVDPKSGVVTLKLDKIKIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHYVTPRPTL  A+  I++EL        +  +++EA+R+ +R  +D+EM+  TG+C+
Sbjct: 243 PNSHYVTPRPTLLQAISEIEKELDEYAAYFRQCNKVVEAERILERTRFDIEMMRETGTCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL G+  G+PP TL +Y+P+D+++F+DESH+TIPQI  MY GD  RKA L  +
Sbjct: 303 GIENYSRYLCGKEAGDPPNTLLDYLPQDAIMFIDESHMTIPQIRAMYNGDRMRKANLINH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS +DNRPL FEEW   +P  + VSATPG +EL+Q  G+ VEQ+IRPTGLVDP   
Sbjct: 363 GFRMPSALDNRPLTFEEWEDRKPVVVYVSATPGQYELKQTGGVAVEQLIRPTGLVDPVCI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++SA  Q+ DV  E      +G R+L+T LTK+MAE+LTEY+ E  I+V Y+HS+VKTLE
Sbjct: 423 VKSADGQIHDVMCESRATIARGYRVLITTLTKKMAENLTEYMREMGIKVAYLHSDVKTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII DLRLG  DVLVG+NL+REGLDIPEC LV ILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 483 RIEIISDLRLGIIDVLVGVNLMREGLDIPECALVGILDADKEGFLRSTTSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +VILYA+ +T S+Q A++ET RRRE Q  HNK+H I P++VK+ +   +   +   
Sbjct: 543 NVEGRVILYANVVTGSMQTAMEETNRRREIQRRHNKEHGIVPRTVKKPVQTSLSERV--- 599

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +   +S  A     ++      +  L+K+M L A+NL+FE AA IR+ I+RL S
Sbjct: 600 GSRKKVSSRAD----AELPASCGVIELQKEMLLCAENLDFERAAEIRNRIRRLAS 650


>gi|170726900|ref|YP_001760926.1| excinuclease ABC subunit B [Shewanella woodyi ATCC 51908]
 gi|169812247|gb|ACA86831.1| excinuclease ABC, B subunit [Shewanella woodyi ATCC 51908]
          Length = 671

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/661 (54%), Positives = 477/661 (72%), Gaps = 10/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++ Y P+GDQP AI +L+ GI S    Q LLGVTGSGKTFT+A VI+ M RP I+MA
Sbjct: 6   FQLESQYVPAGDQPKAIKKLVDGIESGLACQTLLGVTGSGKTFTIANVIKEMSRPTIIMA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP T+T+IEK++S+N  I++MR 
Sbjct: 66  PNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTNTFIEKDASVNAHIEQMRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD++ Q+++L  L + QY R 
Sbjct: 126 SATKALLERKDVVLIASVSAIYGLGDPDSYMKMLLHLRQGDTMGQRDILHRLSELQYTRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + RGT+RV G+ I+IF +  +  A RV +F ++IE +S F PLTG  ++ +    +Y
Sbjct: 186 DIELKRGTYRVRGEVIDIFAADSDSNAIRVELFDDEIERLSLFDPLTGHILQRIARTTVY 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  +  A + IKEEL+ R  +L    +L+E QR+ +R+ YD+EM+   G C 
Sbjct: 246 PKSHYVTPREKILAASEEIKEELRERKKQLLDNNKLIEEQRITERVQYDIEMMVELGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G  PPTL +Y+P+D LL +DESHVT+PQI  MY+GD  RK  L EY
Sbjct: 306 GIENYSRYLSGREEGAGPPTLLDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKMNLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATP ++E+E+  G I EQ+IRPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLKFEEFESLMPQTIFVSATPANYEIEKSDGEIAEQVIRPTGLLDPELE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  E+    +   R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T+E
Sbjct: 426 VRPVAIQVDDLLSEVRKRVKVQERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDTVE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 486 RVEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVCILDADKEGFLRSERSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N KVILYAD IT S+  A+ ET RRR+ Q + N  + + P+ V +KI +V+D  + E 
Sbjct: 546 NMNGKVILYADKITDSMAKAMGETERRRKLQHQFNLDNGLVPKGVSKKITDVMD--VGEK 603

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
               N     + ++ SK   K +        + +L K+MH  A NL FE+AA +RD+++R
Sbjct: 604 EYVQNDLASIRDIAESKGDYKVNDVASISHQIDTLEKKMHEHAKNLEFEQAAAVRDQVRR 663

Query: 793 L 793
           L
Sbjct: 664 L 664


>gi|158321280|ref|YP_001513787.1| excinuclease ABC subunit B [Alkaliphilus oremlandii OhILAs]
 gi|158141479|gb|ABW19791.1| excinuclease ABC, B subunit [Alkaliphilus oremlandii OhILAs]
          Length = 659

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/655 (55%), Positives = 482/655 (73%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y P+GDQP AI  L  GI+   K Q+LLGVTGSGKTFTMA VIE +Q+P +V+A
Sbjct: 4   FQIVSNYRPTGDQPKAIEALANGINKGTKHQVLLGVTGSGKTFTMANVIEKVQKPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP+NAVEYFVSYYDYYQPEAYV  +DTYIEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYVVTSDTYIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D I+V+SVSCIYG+G    Y  ++V L+ G    ++E+L  LV  QY+R 
Sbjct: 124 SATSALLERRDVIIVASVSCIYGLGDPTEYKNLMVSLRSGMEKSREEVLKQLVDIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  IRGTFRV GD +E+FP+   + A R+  FG++IE I E   LTG+ I   + + I+
Sbjct: 184 DINFIRGTFRVRGDVVEVFPASSSENAIRLEFFGDEIERILEVNSLTGEIIGVRQHVSIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T    +  A+K I+ EL+ R+ E + E +L+EAQR+ QR  YD+EML   G CQ
Sbjct: 244 PASHYATGADKVENAIKAIEVELEERIKEFKGEEKLIEAQRIGQRTMYDIEMLREVGFCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PG  P TL +Y PED L+ +DESHVT+PQI  MY GD  RK +L  Y
Sbjct: 304 GIENYSRHLTSREPGSRPYTLMDYFPEDYLIIIDESHVTVPQIRAMYGGDRSRKESLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+  L    + VSATPG +E+++ Q II EQ+IRPTGL+DP ++
Sbjct: 364 GFRLPSAYDNRPLNFEEFEGLVNQIVYVSATPGPYEMDKTQNII-EQVIRPTGLLDPIID 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EI    ++  R+L+T LTK+M+EDLT+YL E  I+V+Y+HS++KT+E
Sbjct: 423 IRPIKGQIDDLVGEIRKRTEKNQRVLVTTLTKKMSEDLTDYLKEIQIKVKYLHSDIKTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  KVI+YAD IT+S+Q+AIDET RRR+ Q E+N  HNI P+S+++ I +VI+   + +
Sbjct: 543 NLEGKVIMYADRITRSMQVAIDETNRRRKLQEEYNIAHNIQPKSIEKGIRDVIEATKVAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                   +A + +LSK++ +  L+ L  +M  AA +L FE AA +RD+I+ L++
Sbjct: 603 EE-VKYGKEASKNNLSKEELEKVLQDLETEMLQAATDLQFERAAELRDKIQSLRA 656


>gi|229548705|ref|ZP_04437430.1| excinuclease ABC subunit B [Enterococcus faecalis ATCC 29200]
 gi|256957371|ref|ZP_05561542.1| excinuclease ABC [Enterococcus faecalis DS5]
 gi|257077633|ref|ZP_05571994.1| excinuclease ABC [Enterococcus faecalis JH1]
 gi|257421018|ref|ZP_05598008.1| excinuclease ABC subunit B [Enterococcus faecalis X98]
 gi|294781575|ref|ZP_06746912.1| excinuclease ABC, B subunit [Enterococcus faecalis PC1.1]
 gi|312951869|ref|ZP_07770758.1| excinuclease ABC subunit B [Enterococcus faecalis TX0102]
 gi|229306171|gb|EEN72167.1| excinuclease ABC subunit B [Enterococcus faecalis ATCC 29200]
 gi|256947867|gb|EEU64499.1| excinuclease ABC [Enterococcus faecalis DS5]
 gi|256985663|gb|EEU72965.1| excinuclease ABC [Enterococcus faecalis JH1]
 gi|257162842|gb|EEU92802.1| excinuclease ABC subunit B [Enterococcus faecalis X98]
 gi|294451353|gb|EFG19818.1| excinuclease ABC, B subunit [Enterococcus faecalis PC1.1]
 gi|310630167|gb|EFQ13450.1| excinuclease ABC subunit B [Enterococcus faecalis TX0102]
 gi|315036140|gb|EFT48072.1| excinuclease ABC subunit B [Enterococcus faecalis TX0027]
 gi|315148140|gb|EFT92156.1| excinuclease ABC subunit B [Enterococcus faecalis TX4244]
 gi|315153185|gb|EFT97201.1| excinuclease ABC subunit B [Enterococcus faecalis TX0031]
 gi|315154903|gb|EFT98919.1| excinuclease ABC subunit B [Enterococcus faecalis TX0043]
 gi|323479956|gb|ADX79395.1| excinuclease ABC, Beta subunit [Enterococcus faecalis 62]
          Length = 665

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/656 (54%), Positives = 474/656 (72%), Gaps = 1/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQPAAIA+L+ G+   EK Q+LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 10  FHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCI+G+G    YSQ +V L++G  +++ ELL SLV  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E   LTG+ +   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETEHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+EEL+ RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D LL +DESHVT+PQI GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +V+QIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI+   ++  R+ +T LTK+MAEDLT+Y  E  ++V+Y+HS+VKTLE
Sbjct: 429 IRPIMGQIDDLVGEIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSDVKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FD+L+GINLLREG+D+PE  L+AILDADKEGFLRS+ SL+QT+GRAAR
Sbjct: 489 RTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD IT S+Q A+DET RRR  Q  +N++H I P+++ ++I ++I      D
Sbjct: 549 NAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTAD 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T + +D     LS+++    L  L ++M  AA  L+FE AA +RD I  LK++
Sbjct: 609 KDETVVQLDKSYEDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKAA 664


>gi|308389449|gb|ADO31769.1| excinuclease ABC subunit B [Neisseria meningitidis alpha710]
          Length = 699

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/667 (54%), Positives = 481/667 (72%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 35  FKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 94

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 95  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 154

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 155 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 214

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 215 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 274

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G C+
Sbjct: 275 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 334

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 335 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 394

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 395 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 453

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 454 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 513

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 514 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 573

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 574 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 633

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +        +Q     K G+ H        +  L K M  AA +L FEEAA +RD I+ 
Sbjct: 634 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 689

Query: 793 LKSSPYF 799
           +K S  F
Sbjct: 690 IKESLLF 696


>gi|261392389|emb|CAX49931.1| UvrABC system protein B (UvrB protein; excinuclease ABC subunit B)
           [Neisseria meningitidis 8013]
          Length = 675

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/665 (53%), Positives = 481/665 (72%), Gaps = 5/665 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP+AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPSAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                      ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K  
Sbjct: 610 DGGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEG 669

Query: 797 PYFQG 801
             F G
Sbjct: 670 LLFGG 674


>gi|325208291|gb|ADZ03743.1| excinuclease ABC, B subunit [Neisseria meningitidis NZ-05/33]
          Length = 699

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/667 (54%), Positives = 481/667 (72%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 35  FKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 94

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 95  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 154

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 155 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 214

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 215 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 274

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G C+
Sbjct: 275 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 334

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 335 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 394

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 395 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 453

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 454 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 513

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 514 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 573

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 574 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 633

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +        +Q     K G+ H        +  L K M  AA +L FEEAA +RD I+ 
Sbjct: 634 DSGKG----RRQGKNKVKVGEIHNEEDTIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 689

Query: 793 LKSSPYF 799
           +K S  F
Sbjct: 690 IKESLLF 696


>gi|228477022|ref|ZP_04061660.1| excinuclease ABC subunit B [Streptococcus salivarius SK126]
 gi|228251041|gb|EEK10212.1| excinuclease ABC subunit B [Streptococcus salivarius SK126]
          Length = 663

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/655 (54%), Positives = 480/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI+ + +P +V+A
Sbjct: 10  FHLVSKYEPSGDQPQAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYD+YQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE + ++
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRICEIESLTGRNLGEVEHLVLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I EE++ ++ + E EG+L+EAQR+ QR  YD+EML   G   
Sbjct: 250 PATHFMTNEEHMEEAIKNIMEEMEAQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR  GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 310 GVENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R+ +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I    + +
Sbjct: 549 NSEGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGIVPQTIKKEIRDLISITKVNE 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A     ++D    +++KK+ +  +K L+KQMH AA+ L+FE AA+IRD +  LKS
Sbjct: 609 AEVAEDTVDYS--AMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLELKS 661


>gi|325204328|gb|ADY99781.1| excinuclease ABC, B subunit [Neisseria meningitidis M01-240355]
          Length = 672

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/674 (54%), Positives = 481/674 (71%), Gaps = 27/674 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A   IKEEL+ R+    KE R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACDSIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSLSKKKGKAHLK---------------SLRKQMHLAADNLNFEEAAR 785
            +             S+ KGK  +K                L K M  AA +L FEEAA 
Sbjct: 610 DSGK-----------SRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAV 658

Query: 786 IRDEIKRLKSSPYF 799
           +RD I+ +K +  F
Sbjct: 659 LRDRIRGIKENLLF 672


>gi|121308602|dbj|BAF43695.1| excision nuclease subunit B [Vibrio fischeri]
          Length = 676

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/668 (54%), Positives = 484/668 (72%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ ++Y P+GDQP AI  L +G+ +    Q LLGVTGSGKTFT+A VI    RP I+MA
Sbjct: 5   YELVSNYQPAGDQPQAIKTLNEGLENGLAHQTLLGVTGSGKTFTLANVIAHSGRPTIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYFVSY+DYYQPEAYVP TDT+IEK+SS+NE I++MR 
Sbjct: 65  HNKTLAAQLYGEMKAFFPNNAVEYFVSYFDYYQPEAYVPTTDTFIEKDSSVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+++SVS IYG+G  ++Y  M++ L+ GD + Q+++L  L + QYKR 
Sbjct: 125 SATKALLERKDAIIIASVSAIYGLGDPKAYLSMMLHLRRGDIINQRDMLRRLAELQYKRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RGTFRV G+ ++IFP+  E  A R+ MF +++E IS+F PLTG  I +++    I
Sbjct: 185 DMAFERGTFRVRGEVLDIFPAESEHEAIRIEMFDDEVERISKFDPLTGSIIAKDMPRCTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK +L +R  EL +  +L+E QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPREQVLDAIEKIKVDLAIRQKELLENNKLVEEQRITQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GE PPTLF+Y+P+D LL +DESH+T+ QI  MY+GD  RK  L E
Sbjct: 305 SGIENYSRYLSGRPEGEAPPTLFDYLPQDGLLIIDESHITVSQIGAMYKGDRSRKENLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+  L P TI VSATPG +E+E+  G I EQ++RPTGL+DP +
Sbjct: 365 YGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYEIEKSDGEIAEQVVRPTGLLDPVI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI +  +   R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRTKNNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K ILYAD IT S++ AI ET RRREKQ  HN+   I PQ++K+ + ++++   L 
Sbjct: 545 RNLEGKAILYADKITGSMEKAIGETERRREKQQLHNEALGIVPQALKKDVADILE---LG 601

Query: 740 DAATTNISIDAQQLSLSK--KKGKAH-----------LKSLRKQMHLAADNLNFEEAARI 786
           D       + A ++ LS+  ++G ++           ++ L  +M+  A +L FE+AA++
Sbjct: 602 DMTKNKRKVVAPKIKLSEVAEEGASYSSMSPQQLEKAIQKLESKMYQHAKDLEFEQAAQV 661

Query: 787 RDEIKRLK 794
           RDEI  L+
Sbjct: 662 RDEIDNLR 669


>gi|56421621|ref|YP_148939.1| excinuclease ABC subunit B [Geobacillus kaustophilus HTA426]
 gi|81819619|sp|Q5KVB5|UVRB_GEOKA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56381463|dbj|BAD77371.1| excinuclease ABC subunit B [Geobacillus kaustophilus HTA426]
          Length = 658

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/655 (56%), Positives = 474/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y P GDQP AIA+L+ G+    K Q LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 5   FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ +   E + I+
Sbjct: 185 DIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  +G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D L+ VDESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       I VSATPG +ELE   G +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    ++  R L+T LTK+MAEDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTITKS+++AI ET RRR  Q E+N+KH I P++VK++I +VI       
Sbjct: 544 NANGHVIMYADTITKSMEVAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYA-- 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A  T +       +++K++ +  +++L  +M  AA  L+FE AA++RD I  LK+
Sbjct: 602 AEETEMYEAKPAAAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKA 656


>gi|258593070|emb|CBE69381.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
           [NC10 bacterium 'Dutch sediment']
          Length = 674

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/655 (55%), Positives = 487/655 (74%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++  DY P GDQP AI +L++G       Q+LLGVTGSGKTFTMA VI A++RP +++A
Sbjct: 4   FKLVCDYQPKGDQPQAIRRLVEGCLQGRPHQVLLGVTGSGKTFTMANVIAAIERPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+ EFK FFPHNAVEYFVSYYDYYQPEAY+P TDT+IEK+S IN+QID++RH
Sbjct: 64  HNKTLAAQLFEEFKAFFPHNAVEYFVSYYDYYQPEAYLPVTDTFIEKDSMINDQIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D ++V+SVSCIYG+GS E+Y  M+V L+ G   +++ +L  LV+ QY+R 
Sbjct: 124 SATRSLLERRDVVIVASVSCIYGLGSPEAYYGMMVFLERGGRCDREAMLRKLVEIQYQRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RGTFRV GD +EIFP++  D   RV +FG+++E + E  P+TG++I+ +  + IY
Sbjct: 184 EYDLHRGTFRVRGDVVEIFPAY-ADTVVRVELFGDEVEGLWEIDPVTGERIQMLYRVPIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTP      A   I EEL  ++   EK G+LLE QRL+QR  +DLEM+   G C+
Sbjct: 243 PATHYVTPHDRREAAFAAILEELNEQVTSFEKAGKLLEVQRLKQRTCFDLEMMREVGVCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GE PPTL +Y+P D+L+ +DESH TIPQI GMY GD  RK TL EY
Sbjct: 303 GIENYSRHLSGRATGEAPPTLMDYLPRDALVIIDESHQTIPQIRGMYHGDRSRKETLVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRP  FEE+       I VSATPG +EL + +G IVEQIIRPTGL+DP ++
Sbjct: 363 GFRLPSAMDNRPFTFEEFERAVGQIIYVSATPGPYELAKVKGEIVEQIIRPTGLIDPEIQ 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+  E+     +G R+L+T LTKRMAE+LTEYL E  I+VRY+HS++ TL+
Sbjct: 423 VRPIRGQIDDLIGEVRAITARGHRVLITTLTKRMAENLTEYLAEVGIKVRYLHSDIDTLK 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RNEIIRELRLGRFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSSGSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +V+LYADTIT S++ A++ET RRRE+Q+ +N+++ I P+S+K+ I +V+  +  +D
Sbjct: 543 NVEGRVVLYADTITDSMRRAMEETERRRERQIAYNREYGITPESIKKSISDVLSSVTEKD 602

Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             T   + D +++  +++++  A+++ L K+M  AA  L FE AA +RD I+ ++
Sbjct: 603 YYTVPAAPDVEEVGRVTQEELPAYIEQLEKEMRAAAKRLEFERAAELRDRIREME 657


>gi|93279489|pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
           By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
 gi|93279490|pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
           By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
          Length = 658

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/655 (56%), Positives = 474/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y P GDQP AIA+L+ G+    K Q LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 5   FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ +   E + I+
Sbjct: 185 DIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  +G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D L+ VDESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       I VSATPG +ELE   G +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    ++  R L+T LTK+MAEDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTITKS+++AI ET RRR  Q E+N+KH I P++VK++I +VI       
Sbjct: 544 NANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYA-- 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A  T +       +++K++ +  +++L  +M  AA  L+FE AA++RD I  LK+
Sbjct: 602 AEETEMYEAKPAAAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKA 656


>gi|317490182|ref|ZP_07948670.1| excinuclease ABC [Eggerthella sp. 1_3_56FAA]
 gi|316910676|gb|EFV32297.1| excinuclease ABC [Eggerthella sp. 1_3_56FAA]
          Length = 716

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/656 (54%), Positives = 487/656 (74%), Gaps = 2/656 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F++ + Y P+GDQP AI +L  G+    + Q LLGVTGSGKTFTMAKVIEA+Q+P +V
Sbjct: 24  TPFKVVSPYEPAGDQPQAIEKLATGVKEGLRYQNLLGVTGSGKTFTMAKVIEAVQKPTLV 83

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQL SE K FFP NAV YFVSYYDYYQPEAYVP +DT+IEK++SINE+++++
Sbjct: 84  MAPNKTLAAQLASELKEFFPDNAVVYFVSYYDYYQPEAYVPSSDTFIEKDASINEEVEKL 143

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R DCIVV+SVSCIYGIGS   Y+ M V +     +++ +++  L+  QY 
Sbjct: 144 RHAATSALLSRRDCIVVASVSCIYGIGSPMDYAGMAVFVDKQKDMDRDQVIHELIDIQYD 203

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD++++FP +  D   R+  +G++IE I+E   +TG+ +   E + 
Sbjct: 204 RNDYEQKRGTFRVRGDALDVFPPYA-DHPIRIEFWGDEIESITEIDNVTGEVLSEFEALP 262

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SHYVT RP ++ A+  I++EL+ RL + ++EG+LLEAQRLE R+ YDLEMLET   
Sbjct: 263 IWPASHYVTARPKMDRALGTIRDELRERLQQFKEEGKLLEAQRLEMRVNYDLEMLETMNF 322

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR++ GR PGEPP TL +Y P+D    +DESHVT+PQI GM+ GD  RK TLA
Sbjct: 323 CSGIENYSRHMDGREPGEPPYTLIDYFPKDFFCIIDESHVTVPQIRGMHEGDRSRKITLA 382

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPSC+DNRPLRF+E+    P  + VSATPG +E +  Q   VEQIIRPTGL+DP 
Sbjct: 383 EHGFRLPSCLDNRPLRFDEFEDRIPQFVYVSATPGDYEQKVSQQQ-VEQIIRPTGLLDPE 441

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R + +Q++D+ DE    A +  R+L+T LTK+MAEDLT++L ++ ++ RYMHS++ T
Sbjct: 442 IIVRGSASQIDDIIDESKERAARDERVLITTLTKKMAEDLTDHLLDQGVKARYMHSDIAT 501

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER+EI+RDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR+  SLIQTIGRA
Sbjct: 502 LERVEILRDLRRGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNHRSLIQTIGRA 561

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV+ +VI+YAD +T S+ LAIDET RRR  Q+++N++H I PQ++++ I +++  +  
Sbjct: 562 ARNVSGQVIMYADKMTDSMALAIDETKRRRAIQMKYNEEHGIEPQTIRKAINDIMSYVTD 621

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E   TT   ++ +   LS+++    ++S+   M  A+ +++FEEAAR+RD++ +L+
Sbjct: 622 EMGGTTAEQVNKELAELSREEVLRIIQSMEDDMASASQSMDFEEAARLRDQVVKLR 677


>gi|325136165|gb|EGC58773.1| excinuclease ABC, B subunit [Neisseria meningitidis M0579]
          Length = 716

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/667 (54%), Positives = 481/667 (72%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 52  FKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 111

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 112 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 171

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 172 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 231

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 232 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 291

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G C+
Sbjct: 292 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 351

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 352 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 411

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 412 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 470

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 471 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 530

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 531 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 590

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 591 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 650

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +        +Q     K G+ H        +  L K M  AA +L FEEAA +RD I+ 
Sbjct: 651 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 706

Query: 793 LKSSPYF 799
           +K S  F
Sbjct: 707 IKESLLF 713


>gi|93005567|ref|YP_580004.1| excinuclease ABC subunit B [Psychrobacter cryohalolentis K5]
 gi|92393245|gb|ABE74520.1| Excinuclease ABC subunit B [Psychrobacter cryohalolentis K5]
          Length = 662

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/665 (55%), Positives = 481/665 (72%), Gaps = 18/665 (2%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M T++ P+GDQP AI +L+ GI++    QLLLGVTGSGKT+TMAKVI   QRP I+MA N
Sbjct: 1   MVTEFEPAGDQPQAIKKLVNGINAGMDEQLLLGVTGSGKTYTMAKVISETQRPTIIMAHN 60

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYV  +DT+IEK+S+IN+ ID+MR SA
Sbjct: 61  KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDSAINDHIDQMRLSA 120

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER D I+V+SVSCIYG+G  ESY +M++ + +GD +++   +  LV+ QY R ++
Sbjct: 121 TRALLERRDAIIVASVSCIYGLGDPESYLKMLLHVVVGDKIDRTATIKRLVEMQYTRNEL 180

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
              RGT+R+ G+ ++I+P+  E +A RV +F N++E+I+ F PLTG+ +R V  I IY  
Sbjct: 181 DFGRGTYRLRGELLDIYPAESEQLAVRVHLFDNEVEKITWFDPLTGKTVRTVPRITIYPK 240

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPR  L  A   I+ EL+ RL    +  +L+EAQRL++R  YDLEM++  G C  I
Sbjct: 241 SHYVTPRNKLEAASHTIRAELEPRLEYFRENNKLIEAQRLKERTQYDLEMIQQLGYCNGI 300

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYS++L+GR  GE PPTLF+YIPED+LLF+DESHVT+ QI  MY+GD  RK  L  YGF
Sbjct: 301 ENYSQHLSGRPSGEAPPTLFDYIPEDALLFLDESHVTVSQIGAMYKGDRSRKENLVNYGF 360

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPS M+NRP++FEEW  ++P TI VSATP  +ELE  +  +VEQ++RPTGL+DP +EIR
Sbjct: 361 RLPSAMNNRPMKFEEWERIKPKTIYVSATPALYELEHSEQ-VVEQVVRPTGLIDPEIEIR 419

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
              TQV+DV  EI    ++  R+L+T LTKRM+EDLT YL E +++V Y+HS++ TLER+
Sbjct: 420 PVLTQVDDVLSEITKRREKDERVLITTLTKRMSEDLTSYLKEYDVKVAYLHSDIDTLERM 479

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +II +LR G  DVLVGINLLREGLD+PE  LVAI DADKEGFLRS+ +LIQTIGRAAR++
Sbjct: 480 QIIHELRTGVHDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERALIQTIGRAARHI 539

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA- 741
           N K ILYAD IT S+Q AIDET RRREKQ+  N +HNI P   +  I + ID     DA 
Sbjct: 540 NGKAILYADRITNSMQKAIDETDRRREKQVAFNLEHNITPTGARRSITDKIDTGDDHDAN 599

Query: 742 -----------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                         +ISI      L+K+  +  L+ L KQM   + +L FE+AA+ RD++
Sbjct: 600 DNQMIPIKSNLPDVDISILRSPDLLAKEINR--LEKLMKQM---SRDLKFEDAAKTRDKV 654

Query: 791 KRLKS 795
             LK+
Sbjct: 655 LELKA 659


>gi|332184269|gb|AEE26523.1| Excinuclease ABC subunit B [Francisella cf. novicida 3523]
          Length = 668

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/660 (54%), Positives = 479/660 (72%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T Y P+GDQP AI  L++G+++  + Q+LLGVTGSGKT+TMA VI+  Q+P +++A
Sbjct: 4   FNLVTKYAPAGDQPKAIKSLVEGVNNGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLIVA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++MR 
Sbjct: 64  HNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY R 
Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +KI+++    I+
Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISIIDSLTSKKIKSLHRATIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            ++HYV  +      ++ IK ELK R+   EKEG+LLEAQR+EQR  YD+EM++  G C 
Sbjct: 244 PSTHYVASKERKEIVIEEIKAELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELGYCT 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RKA L  Y
Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKANLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   VEQ+IRPTGL+DP V 
Sbjct: 364 GFRLPSALDNRPLKFNEFEKLLPQTIYVSATPANYELEKSQN-TVEQVIRPTGLLDPEVF 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QVED   EIN A  +  RIL+T LTK+MAE+LTEYL E  + VRY+HS++ T+E
Sbjct: 423 VRPVAIQVEDALSEINRAIAKEERILITTLTKKMAENLTEYLSEHGVNVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR AR
Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738
           N N + ILYAD +TKS++ A+DET RRR+ Q E+NKKHNI P+++ + I +++D  P + 
Sbjct: 543 NQNGRAILYADVVTKSMKKAMDETLRRRQLQDEYNKKHNITPKTIIKNIDDMLDSSPEMQ 602

Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + A   N+ +    + +S   G       +K+L K+M   A  L FE+A  IRD+I  +K
Sbjct: 603 KRAYKNNLRLKVDDVDVSAILGMTEAAKVIKALEKRMRAYAKELEFEKATTIRDKITEIK 662


>gi|307269815|ref|ZP_07551145.1| excinuclease ABC subunit B [Enterococcus faecalis TX4248]
 gi|306513925|gb|EFM82527.1| excinuclease ABC subunit B [Enterococcus faecalis TX4248]
          Length = 665

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/656 (54%), Positives = 473/656 (72%), Gaps = 1/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQPAAIA+L+ G+   EK Q+LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 10  FHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCI+G+G    YSQ +V L++G  +++ ELL SLV  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E   LTG+ +   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETEHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+EEL+ RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D LL +DESHVT+PQI GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +V+QIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI+   ++  R+ +T LTK+MAEDLT+Y  E  ++V+Y+HS+VKTLE
Sbjct: 429 IRPIMGQIDDLVGEIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSDVKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FD+L+GINLLREG+D+PE  L+AILDADKEGFLRS+ SL+QT+GRAAR
Sbjct: 489 RTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD IT S+Q A+DET RRR  Q  +N++H I P+++ ++I ++I      D
Sbjct: 549 NAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTAD 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T + +D     LS+++    L  L ++M  AA  L+FE AA +RD I  LK +
Sbjct: 609 KDETVVQLDKSYEDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKDA 664


>gi|197335978|ref|YP_002155699.1| excinuclease ABC, B subunit [Vibrio fischeri MJ11]
 gi|197317468|gb|ACH66915.1| excinuclease ABC, B subunit [Vibrio fischeri MJ11]
          Length = 676

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/668 (54%), Positives = 484/668 (72%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ ++Y P+GDQP AI  L +G+ +    Q LLGVTGSGKTFT+A VI    RP I+MA
Sbjct: 5   YELVSNYQPAGDQPQAIKTLNEGLENGLAHQTLLGVTGSGKTFTLANVIAHSGRPTIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYFVSY+DYYQPEAYVP TDT+IEK+SS+NE I++MR 
Sbjct: 65  HNKTLAAQLYGEMKAFFPNNAVEYFVSYFDYYQPEAYVPTTDTFIEKDSSVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+++SVS IYG+G  ++Y  M++ L+ GD + Q+++L  L + QYKR 
Sbjct: 125 SATKALLERKDAIIIASVSAIYGLGDPKAYLSMMLHLRRGDIINQRDMLRRLAELQYKRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RGTFRV G+ ++IFP+  E  A R+ MF +++E IS+F PLTG  I +++    I
Sbjct: 185 DMAFERGTFRVRGEVLDIFPAESEHEAIRIEMFDDEVERISKFDPLTGSIITKDMPRCTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK +L +R  EL +  +L+E QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPREQVLDAIEKIKVDLAIRQKELLENNKLVEEQRITQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GE PPTLF+Y+P+D LL +DESH+T+ QI  MY+GD  RK  L E
Sbjct: 305 SGIENYSRYLSGRPEGEAPPTLFDYLPQDGLLIIDESHITVSQIGAMYKGDRSRKENLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+  L P TI VSATPG +E+E+  G I EQ++RPTGL+DP +
Sbjct: 365 YGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYEIEKSDGEIAEQVVRPTGLLDPVI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI +  +   R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ T+
Sbjct: 425 EVRPVTTQVDDLLSEIRIRTKSNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K ILYAD IT S++ AI ET RRREKQ  HN+   I PQ++K+ + ++++   L 
Sbjct: 545 RNLEGKAILYADKITGSMEKAIGETERRREKQQLHNEALGIVPQALKKDVADILE---LG 601

Query: 740 DAATTNISIDAQQLSLSK--KKGKAH-----------LKSLRKQMHLAADNLNFEEAARI 786
           D       + A ++ LS+  ++G ++           ++ L  +M+  A +L FE+AA++
Sbjct: 602 DMTKNKRKVVAPKIKLSEVAEEGASYSSMSPQQLEKAIQKLESKMYQHAKDLEFEQAAQV 661

Query: 787 RDEIKRLK 794
           RDEI  L+
Sbjct: 662 RDEIDNLR 669


>gi|29375355|ref|NP_814509.1| excinuclease ABC subunit B [Enterococcus faecalis V583]
 gi|227554877|ref|ZP_03984924.1| excinuclease ABC subunit B [Enterococcus faecalis HH22]
 gi|257418369|ref|ZP_05595363.1| excinuclease ABC subunit B [Enterococcus faecalis T11]
 gi|81838991|sp|Q837R9|UVRB_ENTFA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|29342815|gb|AAO80579.1| excinuclease ABC, subunit B [Enterococcus faecalis V583]
 gi|227175990|gb|EEI56962.1| excinuclease ABC subunit B [Enterococcus faecalis HH22]
 gi|257160197|gb|EEU90157.1| excinuclease ABC subunit B [Enterococcus faecalis T11]
 gi|315166946|gb|EFU10963.1| excinuclease ABC subunit B [Enterococcus faecalis TX1341]
 gi|315573458|gb|EFU85649.1| excinuclease ABC subunit B [Enterococcus faecalis TX0309B]
 gi|315581419|gb|EFU93610.1| excinuclease ABC subunit B [Enterococcus faecalis TX0309A]
          Length = 665

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/656 (54%), Positives = 474/656 (72%), Gaps = 1/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQPAAIA+L+ G+   EK Q+LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 10  FHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCI+G+G    YSQ +V L++G  +++ ELL SLV  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E   LTG+ +   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETEHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+EEL+ RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D LL +DESHVT+PQI GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +V+QIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI+   ++  R+ +T LTK+MAEDLT+Y  E  ++V+Y+HS++KTLE
Sbjct: 429 IRPIMGQIDDLVGEIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FD+L+GINLLREG+D+PE  L+AILDADKEGFLRS+ SL+QT+GRAAR
Sbjct: 489 RTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD IT S+Q A+DET RRR  Q  +N++H I P+++ ++I ++I      D
Sbjct: 549 NAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTAD 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T + +D     LS+++    L  L ++M  AA  L+FE AA +RD I  LK++
Sbjct: 609 KDETVVQLDKSYKDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKAA 664


>gi|152969361|ref|YP_001334470.1| excinuclease ABC subunit B [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|262041140|ref|ZP_06014357.1| excinuclease ABC subunit B [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330014492|ref|ZP_08307932.1| excinuclease ABC, B subunit [Klebsiella sp. MS 92-3]
 gi|189037970|sp|A6T6L9|UVRB_KLEP7 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|150954210|gb|ABR76240.1| excinuclease ABC subunit B [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|259041514|gb|EEW42568.1| excinuclease ABC subunit B [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328533019|gb|EGF59793.1| excinuclease ABC, B subunit [Klebsiella sp. MS 92-3]
          Length = 673

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/664 (55%), Positives = 477/664 (71%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I++FP+  +D+A R+ +F  ++E +S F PLTG     V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG++EL++  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI L      R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++   L + 
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQ--LGQG 602

Query: 741 AATTNI-------SIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T         +++   LS   ++ K  +  +  L  QM   A NL FEEAA+IRD++
Sbjct: 603 LAKTKAKGRGKAKAVEPAGLSAVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|227517725|ref|ZP_03947774.1| excinuclease ABC subunit B [Enterococcus faecalis TX0104]
 gi|229546598|ref|ZP_04435323.1| excinuclease ABC subunit B [Enterococcus faecalis TX1322]
 gi|255971219|ref|ZP_05421805.1| excinuclease ABC subunit B [Enterococcus faecalis T1]
 gi|255973842|ref|ZP_05424428.1| excinuclease ABC subunit B [Enterococcus faecalis T2]
 gi|256617648|ref|ZP_05474494.1| excinuclease ABC [Enterococcus faecalis ATCC 4200]
 gi|256761529|ref|ZP_05502109.1| excinuclease ABC [Enterococcus faecalis T3]
 gi|256854373|ref|ZP_05559737.1| excinuclease ABC subunit B [Enterococcus faecalis T8]
 gi|257083684|ref|ZP_05578045.1| excinuclease ABC [Enterococcus faecalis Fly1]
 gi|257086119|ref|ZP_05580480.1| excinuclease ABC [Enterococcus faecalis D6]
 gi|257089190|ref|ZP_05583551.1| excinuclease ABC subunit B [Enterococcus faecalis CH188]
 gi|257415332|ref|ZP_05592326.1| excinuclease ABC [Enterococcus faecalis AR01/DG]
 gi|307276260|ref|ZP_07557388.1| excinuclease ABC subunit B [Enterococcus faecalis TX2134]
 gi|307284475|ref|ZP_07564637.1| excinuclease ABC subunit B [Enterococcus faecalis TX0860]
 gi|307289544|ref|ZP_07569489.1| excinuclease ABC subunit B [Enterococcus faecalis TX0109]
 gi|307296216|ref|ZP_07576044.1| excinuclease ABC subunit B [Enterococcus faecalis TX0411]
 gi|312900357|ref|ZP_07759668.1| excinuclease ABC subunit B [Enterococcus faecalis TX0470]
 gi|312904216|ref|ZP_07763378.1| excinuclease ABC subunit B [Enterococcus faecalis TX0635]
 gi|227074830|gb|EEI12793.1| excinuclease ABC subunit B [Enterococcus faecalis TX0104]
 gi|229308288|gb|EEN74275.1| excinuclease ABC subunit B [Enterococcus faecalis TX1322]
 gi|255962237|gb|EET94713.1| excinuclease ABC subunit B [Enterococcus faecalis T1]
 gi|255966714|gb|EET97336.1| excinuclease ABC subunit B [Enterococcus faecalis T2]
 gi|256597175|gb|EEU16351.1| excinuclease ABC [Enterococcus faecalis ATCC 4200]
 gi|256682780|gb|EEU22475.1| excinuclease ABC [Enterococcus faecalis T3]
 gi|256709933|gb|EEU24977.1| excinuclease ABC subunit B [Enterococcus faecalis T8]
 gi|256991714|gb|EEU79016.1| excinuclease ABC [Enterococcus faecalis Fly1]
 gi|256994149|gb|EEU81451.1| excinuclease ABC [Enterococcus faecalis D6]
 gi|256998002|gb|EEU84522.1| excinuclease ABC subunit B [Enterococcus faecalis CH188]
 gi|257157160|gb|EEU87120.1| excinuclease ABC [Enterococcus faecalis ARO1/DG]
 gi|295114021|emb|CBL32658.1| Excinuclease ABC subunit B [Enterococcus sp. 7L76]
 gi|306496090|gb|EFM65672.1| excinuclease ABC subunit B [Enterococcus faecalis TX0411]
 gi|306499505|gb|EFM68877.1| excinuclease ABC subunit B [Enterococcus faecalis TX0109]
 gi|306503152|gb|EFM72406.1| excinuclease ABC subunit B [Enterococcus faecalis TX0860]
 gi|306507060|gb|EFM76202.1| excinuclease ABC subunit B [Enterococcus faecalis TX2134]
 gi|310632312|gb|EFQ15595.1| excinuclease ABC subunit B [Enterococcus faecalis TX0635]
 gi|311292545|gb|EFQ71101.1| excinuclease ABC subunit B [Enterococcus faecalis TX0470]
 gi|315025740|gb|EFT37672.1| excinuclease ABC subunit B [Enterococcus faecalis TX2137]
 gi|315029876|gb|EFT41808.1| excinuclease ABC subunit B [Enterococcus faecalis TX4000]
 gi|315031473|gb|EFT43405.1| excinuclease ABC subunit B [Enterococcus faecalis TX0017]
 gi|315151539|gb|EFT95555.1| excinuclease ABC subunit B [Enterococcus faecalis TX0012]
 gi|315159997|gb|EFU04014.1| excinuclease ABC subunit B [Enterococcus faecalis TX0312]
 gi|315164647|gb|EFU08664.1| excinuclease ABC subunit B [Enterococcus faecalis TX1302]
 gi|315173029|gb|EFU17046.1| excinuclease ABC subunit B [Enterococcus faecalis TX1346]
 gi|315578043|gb|EFU90234.1| excinuclease ABC subunit B [Enterococcus faecalis TX0630]
 gi|327534350|gb|AEA93184.1| excision endonuclease subunit UvrB [Enterococcus faecalis OG1RF]
          Length = 665

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/656 (54%), Positives = 474/656 (72%), Gaps = 1/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQPAAIA+L+ G+   EK Q+LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 10  FHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCI+G+G    YSQ +V L++G  +++ ELL SLV  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E   LTG+ +   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETEHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+EEL+ RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D LL +DESHVT+PQI GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +V+QIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI+   ++  R+ +T LTK+MAEDLT+Y  E  ++V+Y+HS++KTLE
Sbjct: 429 IRPIMGQIDDLVGEIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FD+L+GINLLREG+D+PE  L+AILDADKEGFLRS+ SL+QT+GRAAR
Sbjct: 489 RTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD IT S+Q A+DET RRR  Q  +N++H I P+++ ++I ++I      D
Sbjct: 549 NAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTAD 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T + +D     LS+++    L  L ++M  AA  L+FE AA +RD I  LK++
Sbjct: 609 KDETVVQLDKSYEDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKAA 664


>gi|149190377|ref|ZP_01868649.1| excinuclease ABC subunit B [Vibrio shilonii AK1]
 gi|148835756|gb|EDL52721.1| excinuclease ABC subunit B [Vibrio shilonii AK1]
          Length = 676

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/668 (54%), Positives = 478/668 (71%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY PSGDQP AIAQL+ G+ S    Q LLGVTGSGKTFT+A VI   QRPAI++A
Sbjct: 5   FELVSDYQPSGDQPTAIAQLVDGLDSGLAHQTLLGVTGSGKTFTLANVIAQSQRPAILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKGFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  +SY +M++ +  G  ++Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPDSYLKMMLHVTRGAVIDQRDILLRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A R+ MF ++I+ IS F PLTG    R++    I
Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQEAVRLEMFDDEIDCISLFDPLTGVITERDIARYTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL  R   L+   +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRDRILDAIENIKVELAARQTYLKDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+F+E+  + P TI VSATP ++ELE+  G + +Q++RPTGL+DP +
Sbjct: 365 YGFRLPSALDNRPLKFDEFEMIAPQTIFVSATPSTYELEKSDGDVADQVVRPTGLLDPEI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E+   A    R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEVRARAAIDERVLVTTLTKRMAEDLTEYLSEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERTEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K ILY D IT S+Q AI+ET RRREKQ  +N ++ + P ++K  I ++++   + 
Sbjct: 545 RNLKGKAILYGDRITNSMQKAINETNRRREKQHAYNVENGMVPMALKRNIKDIME---IG 601

Query: 740 DAATTNISIDAQQLSLSK--KKGKAHLK-----------SLRKQMHLAADNLNFEEAARI 786
             A        +Q+ LSK  +  +A++             L  +M+  A NL FE AA  
Sbjct: 602 SVAKGGKPKKGKQVPLSKVAEPSQAYVALSPQDLEKQILKLEAEMYQHAQNLEFELAAEK 661

Query: 787 RDEIKRLK 794
           RDEI++L+
Sbjct: 662 RDEIEKLR 669


>gi|288554107|ref|YP_003426042.1| excinuclease ABC subunit B [Bacillus pseudofirmus OF4]
 gi|288545267|gb|ADC49150.1| excinuclease ABC subunit B (DinA) SOS protein [Bacillus
           pseudofirmus OF4]
          Length = 658

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/655 (55%), Positives = 476/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQPAAI +++ GI   +K Q LLG TG+GKTFT++ VI+ + +P +++A
Sbjct: 5   FELNSPYQPDGDQPAAIKEIVAGIKEGKKHQTLLGATGTGKTFTISNVIQEVNKPTLIIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SINE+ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINEEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS E Y  ++V L+ G  +++  LL +LV  QY R 
Sbjct: 125 SATSALFERKDVIIIASVSCIYGLGSPEEYRDLVVSLRTGMEMDRNALLRNLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EIFP+  ++   RV  FG++I+ ++E   LTG+       + I+
Sbjct: 185 DVNFTRGTFRVRGDVVEIFPASRDEQCIRVEFFGDEIDRMTEVDALTGEIKGERNHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A+  I+ EL+ +L ++ +EG+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREAKLKKAIANIEVELEEQLKKMHEEGKLLEAQRLEQRTRYDLEMMAEMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL ++ PED LL VDESHVT+PQ+ GMY GD  RK  L  +
Sbjct: 305 GIENYSRHLTLREAGATPYTLLDFFPEDFLLIVDESHVTLPQVRGMYNGDRARKEVLVNH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+      ++ VSATPG +ELE     +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLKFDEFEKKISQSVYVSATPGPYELEHTPK-MVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+L+T LTK+M+EDLT+YL E  I+VRY+HSE+KTLE
Sbjct: 424 VRPIEGQIDDMIGEINARVEKNERVLVTTLTKKMSEDLTDYLKEIGIKVRYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIR LR+G FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 484 RIEIIRQLRMGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YAD +TKS+Q+AIDET RRR  Q E+N+KH I P+++++KI EVI   ++ D
Sbjct: 544 NSNGHVIMYADKMTKSMQIAIDETARRRSIQEEYNEKHGITPKTIQKKIPEVIQATIVSD 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                 +  A +  LSKK  +A ++ + K+M  AA  LNFE AA +RD +  LK+
Sbjct: 604 EDGEATA--APKTKLSKKDKEAMIERMEKEMKDAARELNFERAAELRDLLLELKA 656


>gi|332654162|ref|ZP_08419906.1| excinuclease ABC subunit B [Ruminococcaceae bacterium D16]
 gi|332517248|gb|EGJ46853.1| excinuclease ABC subunit B [Ruminococcaceae bacterium D16]
          Length = 656

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/658 (55%), Positives = 479/658 (72%), Gaps = 9/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y PSGDQP AI  L +GI      Q LLGVTGSGKTFTMAK+IE +QRP +V+A
Sbjct: 4   FEVVSEYTPSGDQPQAIEALSQGIEMGLDEQTLLGVTGSGKTFTMAKIIEQVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EFK FFP+NAVEYFVSYYDYYQPEAY+P TDT+IEK+S+INE+IDR+R 
Sbjct: 64  HNKTLAAQLCAEFKEFFPNNAVEYFVSYYDYYQPEAYIPHTDTFIEKDSAINEEIDRLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLER D IVVSSVSCIYG+G  E +++M+V L++GD +E+ E L  LV  +Y+R 
Sbjct: 124 SATASLLERRDVIVVSSVSCIYGLGEPEDFAKMMVSLRVGDILERDEFLKRLVSIRYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   R  FRV GD++E++P++ +D A RV  FG++I+ ISE   +TG  IR +  I I+
Sbjct: 184 DIAFERNMFRVRGDTVEVWPAYWKDTAIRVEFFGDEIDRISEINVVTGSPIRKLSHIPIW 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTP+  ++ A++ I +EL+ R+   EKEG+L+EAQR++QR  YD+EM++  G C 
Sbjct: 244 PATHYVTPKEKMDAAVQEIYKELEERVAYFEKEGKLIEAQRIKQRTMYDVEMMQELGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR + GR  G PP TL +Y P+D +LF+DESHVT+PQ+  MY GD  RK TL +Y
Sbjct: 304 GIENYSRVIEGRPVGSPPHTLLDYFPKDFVLFIDESHVTLPQVRAMYNGDRARKNTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+FEE+       I VSATPG +E  +  G IVEQ+IRPTGL+DP +E
Sbjct: 364 GFRLPCAYDNRPLKFEEFEKRLNQVIYVSATPGEYERTRS-GQIVEQVIRPTGLLDPKIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+L+T LTK+MAEDLT+YL    I+VRYMH +V T+E
Sbjct: 423 VRPVEGQIDDLIGEINARTARKERVLVTTLTKKMAEDLTDYLQNNGIKVRYMHHDVDTME 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMEIIRDLRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    V++YADTIT S++ A+DET RRR+KQ  +NK+H I P++V + + +     LLE 
Sbjct: 543 NAEGMVVMYADTITPSMRRAMDETERRRQKQDAYNKEHGIVPKTVIKSVRD-----LLEI 597

Query: 741 AATTNISIDAQQ---LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +A  +     +Q    ++SK++  A +  L K M  AA  L FE AA +RD+I  L+ 
Sbjct: 598 SAPADEPSQTRQGRVKAMSKQEKAAEIARLEKAMKEAAKMLEFELAATLRDQIIELRG 655


>gi|206602984|gb|EDZ39464.1| Exinuclease ABC, B subunit (UvrB) [Leptospirillum sp. Group II
           '5-way CG']
          Length = 701

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/657 (55%), Positives = 471/657 (71%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQ  AI  L +GI +    Q LLGVTGSGKTFTMA VI+ +Q+P++++A
Sbjct: 25  FRLASGFSPSGDQERAIDVLSEGILAGITHQTLLGVTGSGKTFTMANVIQRVQKPSLILA 84

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP N VEYFVSYYDYYQPEAY+P TDTYIEK+S++N+ IDRMRH
Sbjct: 85  PNKTLAAQLYREFKAFFPDNRVEYFVSYYDYYQPEAYIPSTDTYIEKDSAVNDLIDRMRH 144

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLER D IVV+SVSCIYG+GS ESY +M + L+ G ++ +++L+  LV  QY+R 
Sbjct: 145 SATSSLLERRDTIVVASVSCIYGLGSPESYQKMHLYLERGQALTREKLIERLVTIQYQRN 204

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + RGTFRV GD ++I P+  ED A RV +FG++IE I E  PLTG ++  + ++ IY
Sbjct: 205 DIELSRGTFRVRGDVVDIIPASYEDRAIRVELFGDEIERIREMDPLTGHELAVIPSVIIY 264

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV P   L  AM  I+EEL  R+ E  + G+LLEAQR+EQR  +DLEM+   G C 
Sbjct: 265 PGTHYVLPPDELERAMAGIEEELHARIREFRQSGKLLEAQRIEQRTLFDLEMIREIGYCH 324

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  G+PPPTLF+Y P+D L+ VDESHV +PQ+ GMY GD+ RK +L EY
Sbjct: 325 GIENYSRHLSGRKAGDPPPTLFDYFPKDFLVIVDESHVAVPQVGGMYHGDYSRKKSLVEY 384

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+      ++ VSATPG +EL    G+ VEQIIRPTGL DP +E
Sbjct: 385 GFRLPSAFDNRPLKFFEFEKTACQSLYVSATPGPYELRMSNGVTVEQIIRPTGLCDPEIE 444

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +  A  QV+ +  EI +   QG R+L+T LTK+MAE+LTEYL ER +RVRY+HSE+ TLE
Sbjct: 445 VVPATHQVDHLLGEIRITVGQGDRVLVTTLTKKMAENLTEYLEERQVRVRYLHSEIDTLE 504

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLR G+FDVLVGINLLREGLD+PE  LVAILDAD+EGFLRS+ SLIQT GRAAR
Sbjct: 505 RMEILRDLRKGEFDVLVGINLLREGLDLPEVSLVAILDADREGFLRSRRSLIQTAGRAAR 564

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +VI Y D +T S++ AI ET RRRE Q+ +N +  I P+ ++++I E +  +   D
Sbjct: 565 NVRGRVIFYGDKVTGSMEEAIQETRRRREIQIAYNLERGITPRGIRKEIPESLYAVSEGD 624

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
               ++  + +   L K+        +RK M  AA +L FE+AA  RD ++     P
Sbjct: 625 YVDVSLVEEVRGRILEKEGDALPDGEIRKLMEKAASDLEFEKAAYYRDILRARGRDP 681


>gi|319639507|ref|ZP_07994256.1| UvrABC system protein B [Neisseria mucosa C102]
 gi|317399273|gb|EFV79945.1| UvrABC system protein B [Neisseria mucosa C102]
          Length = 675

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/663 (54%), Positives = 482/663 (72%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRETVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P TI VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT+GRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTMGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT SI+ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSIKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K +
Sbjct: 610 DSGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEN 669

Query: 797 PYF 799
             F
Sbjct: 670 LLF 672


>gi|206577462|ref|YP_002239587.1| excinuclease ABC, B subunit [Klebsiella pneumoniae 342]
 gi|288936430|ref|YP_003440489.1| excinuclease ABC subunit B [Klebsiella variicola At-22]
 gi|290510514|ref|ZP_06549884.1| excinuclease ABC, B subunit [Klebsiella sp. 1_1_55]
 gi|226698336|sp|B5XYX2|UVRB_KLEP3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|206566520|gb|ACI08296.1| excinuclease ABC, B subunit [Klebsiella pneumoniae 342]
 gi|288891139|gb|ADC59457.1| excinuclease ABC, B subunit [Klebsiella variicola At-22]
 gi|289777230|gb|EFD85228.1| excinuclease ABC, B subunit [Klebsiella sp. 1_1_55]
          Length = 673

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/664 (55%), Positives = 477/664 (71%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I++FP+  +D+A R+ +F  ++E +S F PLTG     V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVESTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG++EL++  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI L      R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++   L + 
Sbjct: 545 NINGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQ--LGQG 602

Query: 741 AATTNI-------SIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T         +++   LS   ++ K  +  +  L  QM   A NL FEEAA+IRD++
Sbjct: 603 LAKTKAKGRGKAKAVEPAGLSAVEMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|257792254|ref|YP_003182860.1| excinuclease ABC, B subunit [Eggerthella lenta DSM 2243]
 gi|325833634|ref|ZP_08166083.1| excinuclease ABC, B subunit [Eggerthella sp. HGA1]
 gi|257476151|gb|ACV56471.1| excinuclease ABC, B subunit [Eggerthella lenta DSM 2243]
 gi|325485558|gb|EGC88027.1| excinuclease ABC, B subunit [Eggerthella sp. HGA1]
          Length = 716

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/656 (54%), Positives = 486/656 (74%), Gaps = 2/656 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F+  + Y P+GDQP AI +L  G+    + Q LLGVTGSGKTFTMAKVIEA+Q+P +V
Sbjct: 24  TPFKAVSPYEPAGDQPQAIEKLATGVKEGLRYQNLLGVTGSGKTFTMAKVIEAVQKPTLV 83

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQL SE K FFP NAV YFVSYYDYYQPEAYVP +DT+IEK++SINE+++++
Sbjct: 84  MAPNKTLAAQLASELKEFFPDNAVVYFVSYYDYYQPEAYVPSSDTFIEKDASINEEVEKL 143

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R DCIVV+SVSCIYGIGS   Y+ M V +     +++ +++  L+  QY 
Sbjct: 144 RHAATSALLSRRDCIVVASVSCIYGIGSPMDYAGMAVFVDKQKDMDRDQVIHELIDIQYD 203

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD++++FP +  D   R+  +G++IE I+E   +TG+ +   E + 
Sbjct: 204 RNDYEQKRGTFRVRGDALDVFPPYA-DHPIRIEFWGDEIESITEIDNVTGEVLSEFEALP 262

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SHYVT RP ++ A+  I++EL+ RL + ++EG+LLEAQRLE R+ YDLEMLET   
Sbjct: 263 IWPASHYVTARPKMDRALGTIRDELRERLQQFKEEGKLLEAQRLEMRVNYDLEMLETMNF 322

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR++ GR PGEPP TL +Y P+D    +DESHVT+PQI GM+ GD  RK TLA
Sbjct: 323 CSGIENYSRHMDGREPGEPPYTLIDYFPKDFFCIIDESHVTVPQIRGMHEGDRSRKITLA 382

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPSC+DNRPLRF+E+    P  + VSATPG +E +  Q   VEQIIRPTGL+DP 
Sbjct: 383 EHGFRLPSCLDNRPLRFDEFEDRIPQFVYVSATPGDYEQKVSQQQ-VEQIIRPTGLLDPE 441

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R + +Q++D+ DE    A +  R+L+T LTK+MAEDLT++L ++ ++ RYMHS++ T
Sbjct: 442 IIVRGSASQIDDIIDESKERAARDERVLITTLTKKMAEDLTDHLLDQGVKARYMHSDIAT 501

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER+EI+RDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR+  SLIQTIGRA
Sbjct: 502 LERVEILRDLRRGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNHRSLIQTIGRA 561

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV+ +VI+YAD +T S+ LAIDET RRR  Q+++N++H I PQ++++ I +++  +  
Sbjct: 562 ARNVSGQVIMYADKMTDSMALAIDETKRRRAIQMKYNEEHGIEPQTIRKAINDIMSYVTD 621

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E   TT   ++ +   LS+++    ++S+   M  A+ +++FEEAAR+RD++ +L+
Sbjct: 622 EMGGTTAEQVNKELAELSREEVLRIIQSMEDDMASASQSMDFEEAARLRDQVVKLR 677


>gi|304316126|ref|YP_003851271.1| excinuclease ABC subunit B [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777628|gb|ADL68187.1| excinuclease ABC, B subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 661

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/658 (54%), Positives = 488/658 (74%), Gaps = 11/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI +L +G++   K Q LLGVTGSGKT+TMA +I+ + +P +V+A
Sbjct: 4   FKLVSDYRPTGDQPEAIKKLTEGVNMGLKCQTLLGVTGSGKTYTMANIIKNVNKPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK++SINE+ID++RH
Sbjct: 64  HNKTLAAQLCSEFKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIEKDASINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G  E Y  +++ L+ G   ++ E+L  LV   Y+R 
Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPEDYEDLMLSLRPGMVKDRDEILKKLVDIHYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +RG FRV GD IE+FP+   + A R+ +FG++I+ I+E   LTG+ +     + I+
Sbjct: 184 DINFVRGKFRVRGDVIEVFPASSSEKAIRIELFGDEIDRITEIDVLTGEIVGERNHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T +  L  A++ I++EL+ R  EL+ +G++LEA+RL+QR  YD+EML+  G C 
Sbjct: 244 PASHYATSKEKLKRAIESIEKELEERYKELKDQGKILEAERLKQRTNYDIEMLQEVGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++GR  G PP TL +Y P+D L+F+DESHVTIPQI GMY GD  RK +L ++
Sbjct: 304 GIENYSRHISGRPAGSPPYTLLDYFPDDFLMFIDESHVTIPQIRGMYNGDRARKESLVDF 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+       I VSATPG +ELE  +  +VEQIIRPTGLVDP V+
Sbjct: 364 GFRLPSAFDNRPLKFEEFEERINQLICVSATPGPYELEHSER-VVEQIIRPTGLVDPEVK 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + QV+D+  EI +  ++G R+L+T LTK+MAEDLT+Y  +  ++V+Y+HS+++T+E
Sbjct: 423 VKPVKGQVDDLLSEIKMTVEKGYRVLVTTLTKKMAEDLTDYFNDMGVKVKYLHSDIETIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N   +VI+YADT+T+S++ AI+ET RRR  Q+++NKKH I P+++ + I +VI+   + E
Sbjct: 543 NAEGRVIMYADTVTESMKNAINETNRRRAIQMDYNKKHGITPKTIVKGIRDVIEATKVAE 602

Query: 740 DAATTNISIDAQ---QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           D    +I  +A+   ++S+ K      +  L K+M  AA  L FE+AA++RD I  L+
Sbjct: 603 DKVPYSIK-EAEVVDRVSIEK-----MISELEKEMRKAAKELEFEKAAKLRDRIFELQ 654


>gi|295091037|emb|CBK77144.1| excinuclease ABC, B subunit [Clostridium cf. saccharolyticum K10]
          Length = 663

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/656 (54%), Positives = 482/656 (73%), Gaps = 6/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AIAQL+KG     + + LLGVTGSGKTFTMA VI+A+ +P +++A
Sbjct: 4   FELVSEYAPTGDQPQAIAQLVKGFQEGNQFETLLGVTGSGKTFTMANVIQALNKPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID++RH
Sbjct: 64  HNKTLAAQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E++  L+  QY R 
Sbjct: 124 SATAALSERSDVIIVASVSCIYGLGSPIDYKEMVISLRPGMIKDRDEVIHKLIDIQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD +EI+P++    A+R+  FG++++ I+E   LTG+    +  + I+
Sbjct: 184 DMDFKRGSFRVRGDVLEIYPAYSGGDAYRIEFFGDEVDRITEIDTLTGEIKAQLGHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +  A K I EELK ++   + E +LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 244 PASHYVIPKEKMELAAKNILEELKEQVAWFKSEDKLLEAQRILERTNFDVEMMRETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PGEPP TL +Y PED L+ +DESH+T+PQI GMY GD  RK TL EY
Sbjct: 304 GIENYSRHLTGSAPGEPPCTLIDYFPEDFLIIIDESHITLPQIRGMYAGDRSRKKTLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATP  +E E  + +  EQIIRPTGL+DPP++
Sbjct: 364 GFRLPSALDNRPLNFEEFESKIDQMLFVSATPSDYE-EAHEMLRAEQIIRPTGLLDPPID 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N   ++  ++L+T LTKRMAEDLT+Y+ +  IRV+Y+HS++ TLE
Sbjct: 423 VRPVEGQIDDLVSEVNREIEKKGKVLITTLTKRMAEDLTDYMRDAGIRVKYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQT+GRAAR
Sbjct: 483 RAEIIRDMRLDVFDVLVGINLLREGLDIPEISLVAILDADKEGFLRSETSLIQTVGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADTIT S+++AI+ET RRR+ Q  +N++H+I P ++K+ + ++I      +
Sbjct: 543 NSEGHVIMYADTITDSMRVAIEETKRRRQIQQAYNEEHHITPTTIKKAVRDLISISQAAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD---EIKRL 793
             T  ++ D +  S+ +K+ K  +K L K+MH AA  LNFEEAA +RD   EIK++
Sbjct: 603 GVTNEVTKDPE--SMDEKELKKLVKELTKKMHQAAAELNFEEAAILRDRMVEIKKM 656


>gi|297531342|ref|YP_003672617.1| excinuclease ABC subunit B [Geobacillus sp. C56-T3]
 gi|297254594|gb|ADI28040.1| excinuclease ABC, B subunit [Geobacillus sp. C56-T3]
          Length = 658

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/655 (56%), Positives = 474/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P GDQP AIA+L+ G+    K Q LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 5   FQLVSPYEPQGDQPQAIAKLVDGLRLGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ +   E + I+
Sbjct: 185 DIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  +G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D L+ VDESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       I VSATPG +ELE   G +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    ++  R L+T LTK+MAEDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTITKS+++AI ET RRR  Q E+N+KH I P++VK++I +VI       
Sbjct: 544 NANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYA-- 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A  T +       +++K++ +  ++ L  +M  AA  L+FE AA++RD I  LK+
Sbjct: 602 AEETEMYEAKPAAAMTKQEREELIRKLEAEMKEAAKALDFERAAQLRDIIFELKA 656


>gi|261420530|ref|YP_003254212.1| excinuclease ABC subunit B [Geobacillus sp. Y412MC61]
 gi|319768199|ref|YP_004133700.1| excinuclease ABC subunit B [Geobacillus sp. Y412MC52]
 gi|261376987|gb|ACX79730.1| excinuclease ABC, B subunit [Geobacillus sp. Y412MC61]
 gi|317113065|gb|ADU95557.1| excinuclease ABC, B subunit [Geobacillus sp. Y412MC52]
          Length = 658

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/655 (56%), Positives = 475/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P GDQP AIA+L+ G+    K Q LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 5   FQLVSPYEPQGDQPQAIAKLVDGLRLGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ +   E + I+
Sbjct: 185 DIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  +G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D L+ VDESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       I +SATPG +ELE   G +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYISATPGPYELEHSPG-VVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI+   ++  R L+T LTK+MAEDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPTKGQIDDLIGEIHERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTITKS+++AI ET RRR  Q E+N+KH I P++VK++I +VI       
Sbjct: 544 NANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYA-- 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A  T +       +++K++ +  ++ L  +M  AA  L+FE AA++RD I  LK+
Sbjct: 602 AEETEMYEAKPAAAMTKQEREELIRKLEAEMKEAAKALDFERAAQLRDIIFELKA 656


>gi|325128411|gb|EGC51293.1| excinuclease ABC, B subunit [Neisseria meningitidis N1568]
          Length = 675

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/671 (54%), Positives = 479/671 (71%), Gaps = 21/671 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIARSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++ Q++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIAQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A   IKEEL+ R+    KE R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACDSIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPSNTIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSLSKKK----GKAH--------LKSLRKQMHLAADNLNFEEAARIRD 788
                   D  +  L  K     G+ H        +  L K M  AA +L FEEAA +RD
Sbjct: 610 --------DGGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRD 661

Query: 789 EIKRLKSSPYF 799
            I+ +K S  F
Sbjct: 662 RIRNIKESLLF 672


>gi|320547053|ref|ZP_08041351.1| excision endonuclease subunit UvrB [Streptococcus equinus ATCC
           9812]
 gi|320448290|gb|EFW89035.1| excision endonuclease subunit UvrB [Streptococcus equinus ATCC
           9812]
          Length = 663

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/656 (54%), Positives = 480/656 (73%), Gaps = 5/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYEPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIQEIESLTGKVLGEVEHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I EE++ ++ + E+EG+L+EAQR+ QR  YD+EML   G   
Sbjct: 250 PATHFMTNEEHMEHAIKNILEEMEEQVKKFEEEGKLIEAQRIRQRTEYDVEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ VDESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMVDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +ELEQ    IVEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYELEQTD-TIVEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT+S+Q A+DET RRRE Q+ +N++H I PQ++K+ I ++I    +  
Sbjct: 549 NSEGHVIMYADKITESMQKAMDETARRREIQMRYNEEHGIIPQTIKKDIRDLIS---ISK 605

Query: 741 AATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A  T+++ D     S++K + K  +K L+KQMH AA+ L+FE AA++RD +  LK+
Sbjct: 606 ANETDVAEDTPDYSSMNKTERKEAIKKLQKQMHEAAEMLDFELAAQLRDMVLELKA 661


>gi|295696763|ref|YP_003590001.1| excinuclease ABC, B subunit [Bacillus tusciae DSM 2912]
 gi|295412365|gb|ADG06857.1| excinuclease ABC, B subunit [Bacillus tusciae DSM 2912]
          Length = 659

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/658 (56%), Positives = 478/658 (72%), Gaps = 6/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P GDQP AIA+L +GI    + Q LLGVTGSGKT+TMA VI  + +P +V+A
Sbjct: 6   FQLVSDYEPRGDQPEAIARLTEGIRRGYRHQTLLGVTGSGKTYTMANVIAQVNKPTLVIA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK++ IN++ID++RH
Sbjct: 66  HNKTLAAQLAAEFKAFFPNNAVEYFVSYYDYYQPEAYIPHTDTYIEKDAKINDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+G+ + Y   ++ L++G    ++E+L  LV  QY+R 
Sbjct: 126 SATSALFERSDVIIVASVSCIYGLGNPDEYRTHVLSLRVGMEKSRREILHRLVDMQYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +RGTFRV GD IEIFP+   + A RV +FG++I+ I+E   LTG+ I   E + ++
Sbjct: 186 DINFVRGTFRVRGDVIEIFPASRSEQAVRVELFGDEIDRITEVDVLTGEVIGQREHVAVF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT R  L  A++ I+ EL  RL  L  +G+LLEAQRLEQR  YDLEM++  G C 
Sbjct: 246 PASHFVTSRERLERAIRDIRVELAERLEVLRGQGKLLEAQRLEQRTNYDLEMMQELGFCP 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  G PP TLF+Y P+D LL +DESHVT+PQI GMY GD  RK TL E+
Sbjct: 306 GIENYSRHLEGRPAGSPPNTLFDYFPDDFLLLIDESHVTLPQIHGMYGGDKTRKDTLIEH 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I VSATPG +ELE  +  +VEQIIRPTGL+DP VE
Sbjct: 366 GFRLPSAADNRPLTFEEFEKKVHQVIYVSATPGPYELEHSEQ-VVEQIIRPTGLLDPKVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI     +  R+L+T LTKRMAEDLT+YL E   +VRY+HS++KT+E
Sbjct: 425 VRPIQGQIDDLVGEIRKRVNRDERVLVTTLTKRMAEDLTDYLKELGFKVRYLHSDIKTIE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ ++RDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 485 RMALLRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N +  VI+YADTIT S+  AI ET RRR KQ+ +N++H I PQ+V++ + ++I+     E
Sbjct: 545 NADGHVIMYADTITDSMAAAIRETERRRAKQMWYNQEHGITPQTVRKAVRDIIEATKAAE 604

Query: 740 DAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + A   +   AQ+LS   K+ +A L + L K+M  AA  L FE AA +RD I  L +S
Sbjct: 605 EPAVYEVVPKAQKLS---KRERADLIRRLEKEMKEAAKALEFERAAELRDLIVELSAS 659


>gi|295096529|emb|CBK85619.1| excinuclease ABC, B subunit [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 671

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/662 (55%), Positives = 476/662 (71%), Gaps = 10/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMIIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTG     ++   IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDMALRVELFDEEVERLSLFDPLTGHVESVIQRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKTELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGE PPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGDDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   +    R+L+T LTKRMAEDLTEYL E   +VRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRARSAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++   L ++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGITPQGLNKKVVDIL--ALGQN 602

Query: 741 AATTNIS--------IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            A T           ++   ++L+ K  +  +  L  QM   A NL FEEAA+IRD++ +
Sbjct: 603 IAKTKAKGRGKARSVVEEDTVALTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQ 662

Query: 793 LK 794
           L+
Sbjct: 663 LR 664


>gi|325132472|gb|EGC55165.1| excinuclease ABC, B subunit [Neisseria meningitidis M6190]
          Length = 716

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/663 (54%), Positives = 479/663 (72%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 52  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 111

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 112 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 171

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 172 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 231

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    ++
Sbjct: 232 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 291

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G C+
Sbjct: 292 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 351

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ + +  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 352 GIENYSRHFSSKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 411

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 412 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 470

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 471 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 530

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 531 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 590

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 591 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 650

Query: 741 AATTNISIDAQQLSLS----KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                      ++ +S    ++     +  L K M  AA +L FEEAA +RD I+ +K  
Sbjct: 651 DGGKGRRQGKNKVKVSEIHNEEDAVKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEG 710

Query: 797 PYF 799
             F
Sbjct: 711 LLF 713


>gi|121535499|ref|ZP_01667308.1| excinuclease ABC, B subunit [Thermosinus carboxydivorans Nor1]
 gi|121305918|gb|EAX46851.1| excinuclease ABC, B subunit [Thermosinus carboxydivorans Nor1]
          Length = 697

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/655 (56%), Positives = 471/655 (71%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   + P+GDQP AI  L +GI   E+ Q+LLG TG+GKTFT+AK IE +Q+P +V+A
Sbjct: 18  FQVVAPFVPTGDQPQAIEALAEGIFRGERAQVLLGATGTGKTFTIAKTIEKVQKPTLVIA 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFPHNAVEYFVSYYDYYQPEAY+P+TDTYIEK++SIN++ID++RH
Sbjct: 78  HNKTLAAQLASEFKEFFPHNAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINDEIDKLRH 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS + Y  +++ L+ G   ++ E+L  LV+ QY+R 
Sbjct: 138 SATSALFERRDVIIVASVSCIYGLGSPDEYRGLVLSLRQGQVRDRDEILRKLVEIQYERN 197

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD IEIFP+   + A RV +FG+++E I E   LTG+ +   + I IY
Sbjct: 198 DVNFTRGKFRVRGDVIEIFPAAYGEQAVRVELFGDEVERILEIDTLTGEILAERKHIAIY 257

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT R  +  A+  I++EL+ RL EL   G+LLEAQRLEQR  YD+EM+   G C 
Sbjct: 258 PASHYVTTRENMLRAIADIEKELEERLAELRAAGKLLEAQRLEQRTRYDMEMMLEMGYCS 317

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++TGR PGE P TL +Y P+D LL +DESHVT+PQ+  MY GD  RK  L E+
Sbjct: 318 GIENYSRHITGRKPGEAPYTLLDYFPDDFLLVIDESHVTLPQVRAMYNGDKSRKDMLVEH 377

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F+E+       I VSATPG +EL+     +V+QIIRPTGLVDP VE
Sbjct: 378 GFRLPSAYDNRPLTFDEFVQRINQVIYVSATPGPYELKTSTR-VVQQIIRPTGLVDPEVE 436

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI   A    R+L+T LTK+MAEDLTE+L E  +RVRY+HSE+ T+E
Sbjct: 437 VRPIKGQMDDLLGEIKARAAANERVLVTTLTKKMAEDLTEFLREMGVRVRYLHSEIATIE 496

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 497 RADIIRDLRAGAFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 556

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ KVI+YADTIT S++ AIDET RRR  Q  +N+ H I PQ+V++++ E+I+      
Sbjct: 557 NVHGKVIMYADTITDSMRRAIDETNRRRAIQQAYNEAHGITPQTVRKRVKELIETT---K 613

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS-LRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A T     A +L+   +     L + L KQM  AA NL FE AA +RD +  LK
Sbjct: 614 VAETPAEYKADRLAGMTRTEMLDLAANLEKQMRQAAKNLEFERAAELRDMLIELK 668


>gi|117928313|ref|YP_872864.1| excinuclease ABC subunit B [Acidothermus cellulolyticus 11B]
 gi|117648776|gb|ABK52878.1| Excinuclease ABC subunit B [Acidothermus cellulolyticus 11B]
          Length = 705

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/692 (52%), Positives = 491/692 (70%), Gaps = 30/692 (4%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + +  + +  F++ ++Y PSGDQP AI +L + I   ++  +LLG TG+GKT T+A +IE
Sbjct: 4   VTDVQRRVAPFRVISEYRPSGDQPQAIDELERRIRRGDRDVVLLGATGTGKTATIAWLIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +V+ PNK LAAQ  +E +   P NA+EYFVSYYDYYQPEAY+P+TDTYIEK++S
Sbjct: 64  RLQRPTLVIEPNKTLAAQFANELRQLMPENAIEYFVSYYDYYQPEAYIPQTDTYIEKDAS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN++++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +++L++G+ +E+  LL 
Sbjct: 124 INDEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMLRLRVGEEIERDILLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV  QY R D+   RGTFRV GD+I++ P + E++A R+ MFG+ IE ++  +PLTG+ 
Sbjct: 184 RLVDIQYTRNDVAFTRGTFRVRGDTIDVIPQY-EELAVRIEMFGDVIERLATLHPLTGEV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +   E I I+  SHY+     +  A++ I+EEL  RL ELEK+ +LLEAQRL  R TYDL
Sbjct: 243 LSEDEEIYIFPASHYIAGPERMARAIRDIEEELAQRLAELEKQNKLLEAQRLRMRTTYDL 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML   G+C  IENYSR++ GR PG PP TL +Y PED LL +DESH+T+PQI GMY GD
Sbjct: 303 EMLRHIGTCSGIENYSRHIDGRPPGSPPNTLLDYFPEDFLLVIDESHITVPQIGGMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK  L E+GFRLPS +DNRPLRF+E+      T+ +SATPG +EL +  G +VEQ+IR
Sbjct: 363 MSRKRVLVEHGFRLPSALDNRPLRFDEFLDRIGQTVYLSATPGPYELAKVGGDVVEQVIR 422

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++  + Q++D+  EI + A++G R+L+T LTK+MAEDLT+YL E  IRVR
Sbjct: 423 PTGLVDPEIVVKPTKGQIDDLVHEIRVRAERGERVLVTTLTKKMAEDLTDYLLELGIRVR 482

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSEV TL R+E++R+LR G+FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS TS
Sbjct: 483 YLHSEVDTLRRVELLRELRQGEFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSATS 542

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAAR+V+ +V +YADT+T +++ AIDET RRR KQL +N +H I+PQ +++KI 
Sbjct: 543 LIQTIGRAARHVSGQVHMYADTVTAAMKEAIDETNRRRAKQLAYNAEHGIDPQPIRKKIA 602

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKA-------------HLKS----------- 766
           +++D ++ EDA T  + +      +S+ K  A             H K            
Sbjct: 603 DILDTLIREDADTQAL-LGGTGRQVSRGKAPAPGLASKAAPPVGRHAKDLAAMPRQELTR 661

Query: 767 ----LRKQMHLAADNLNFEEAARIRDEIKRLK 794
               L +QMH AA  L FE AAR+RDEI+ LK
Sbjct: 662 LIEELTEQMHAAAAELQFELAARLRDEIRELK 693


>gi|218768351|ref|YP_002342863.1| excinuclease ABC subunit B [Neisseria meningitidis Z2491]
 gi|9910889|sp|P56996|UVRB_NEIMA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|121052359|emb|CAM08691.1| excinuclease ABC subunit B [Neisseria meningitidis Z2491]
          Length = 675

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/667 (54%), Positives = 479/667 (71%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A   IKEEL+ R+    KE R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACDSIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPSNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +        +Q     K G+ H        +  L K M  AA +L FEEAA +RD I+ 
Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665

Query: 793 LKSSPYF 799
           +K +  F
Sbjct: 666 IKENLLF 672


>gi|88607428|ref|YP_505866.1| excinuclease ABC subunit B [Anaplasma phagocytophilum HZ]
 gi|123494148|sp|Q2GID5|UVRB_ANAPZ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|88598491|gb|ABD43961.1| excinuclease ABC, B subunit [Anaplasma phagocytophilum HZ]
          Length = 653

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/657 (54%), Positives = 472/657 (71%), Gaps = 16/657 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++  +GDQP AI +L +GI    + Q+LLGVTGSGKTFTMA VIE  Q PA+++A
Sbjct: 4   FKITSEFDAAGDQPEAIRKLSEGIERGVREQVLLGVTGSGKTFTMASVIEKRQCPALIVA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E + FFP+NAVEYFVSYYDYYQPEAY+P +D YIEK++ INE+ID +RH
Sbjct: 64  HNKTLAAQLYEEMRMFFPNNAVEYFVSYYDYYQPEAYIPHSDVYIEKDALINEKIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D IVV+SVSCIYG+GS E YS+M + L IG  ++  +L   LV+ QYK  
Sbjct: 124 SATRSILERRDVIVVASVSCIYGLGSPELYSEMTIPLSIGMQIDLCQLKEKLVELQYKSG 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                RGTF V GD + IFPSH ED  WR+SMFG+ IE I E     G  + N+E +K++
Sbjct: 184 S-QCERGTFSVKGDIVTIFPSHHEDHVWRISMFGDVIESIQEVDNNLGIAVANLEKVKVF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHYVTPRPTL  A+  I+EEL+  +I   K  +++EA+R+ +R  +D+EM++ TG+C+
Sbjct: 243 PNSHYVTPRPTLMQALSRIEEELQECVINYRKNNKIIEAERILERTKFDIEMMKETGTCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL G+  GEPP TL +Y+P DSL+F+DESH+TIPQI  MY GD  RKA L  +
Sbjct: 303 GIENYSRYLCGKAAGEPPNTLLDYLPVDSLMFIDESHITIPQIRSMYNGDRVRKANLITH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEEW   + T + VSATPG +E E+  G++VEQ+IRPTGLVDP   
Sbjct: 363 GFRLPSALDNRPLTFEEWESRKTTLVYVSATPGKYETERTSGVVVEQLIRPTGLVDPICI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ A  Q+ DV +E      +G R+L+T LTK+MAE+L+E++ E  I+V Y+HS+VKTLE
Sbjct: 423 VKKASGQIADVVNESQATISEGYRVLVTALTKKMAENLSEHMREIGIKVAYLHSDVKTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II  LR G+ DVL+G+NLLREGLDIPEC LV ILDADKEGFLRS+TSL+QTIGRAAR
Sbjct: 483 RMDIIAQLRTGEIDVLIGVNLLREGLDIPECALVCILDADKEGFLRSETSLVQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N +VILYAD +TKS++ AIDET RRR  Q  +NK H I P+S+ + +           
Sbjct: 543 NMNGRVILYADRVTKSMKAAIDETNRRRAVQESYNKAHGITPKSISKSV----------- 591

Query: 741 AATTNISIDAQQLSLSKKKGKA----HLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           A +    I  +    SK K  A     +  L+K+M L A+NL FE+A  IR++I +L
Sbjct: 592 ATSLKDRITVKGTKGSKSKSAAVTEEDIIKLQKEMLLHAENLEFEKALEIRNQINKL 648


>gi|296314477|ref|ZP_06864418.1| excinuclease ABC subunit B [Neisseria polysaccharea ATCC 43768]
 gi|296838778|gb|EFH22716.1| excinuclease ABC subunit B [Neisseria polysaccharea ATCC 43768]
          Length = 675

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/671 (54%), Positives = 480/671 (71%), Gaps = 21/671 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++ Q++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIAQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEYAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSLSKKK----GKAH--------LKSLRKQMHLAADNLNFEEAARIRD 788
                   D  +  L  K     G+ H        +  L K M  AA +L FEEAA IRD
Sbjct: 610 --------DGGKSRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVIRD 661

Query: 789 EIKRLKSSPYF 799
            I+ +K S  F
Sbjct: 662 RIRSIKESLLF 672


>gi|283795874|ref|ZP_06345027.1| excinuclease ABC subunit B [Clostridium sp. M62/1]
 gi|291076507|gb|EFE13871.1| excinuclease ABC subunit B [Clostridium sp. M62/1]
          Length = 663

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/656 (54%), Positives = 482/656 (73%), Gaps = 6/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AIA+L+KG     + + LLGVTGSGKTFTMA VI+A+ +P +++A
Sbjct: 4   FELVSEYAPTGDQPQAIAELVKGFKEGNQFETLLGVTGSGKTFTMANVIQALNKPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID++RH
Sbjct: 64  HNKTLAAQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E++  L+  QY R 
Sbjct: 124 SATAALSERSDVIIVASVSCIYGLGSPIDYKEMVISLRPGMIKDRDEVIHKLIDIQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD +EI+P++    A+R+  FG++++ I+E   LTG+    +  + I+
Sbjct: 184 DMDFKRGSFRVRGDVLEIYPAYSGGDAYRIEFFGDEVDRITEIDTLTGEIKAQLGHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +  A K I EELK ++   + E +LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 244 PASHYVIPKEKMELAAKNILEELKEQVAWFKSEDKLLEAQRILERTNFDVEMMRETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PGEPP TL +Y PED L+ +DESH+T+PQI GMY GD  RK TL EY
Sbjct: 304 GIENYSRHLTGSAPGEPPCTLIDYFPEDFLIIIDESHITLPQIRGMYAGDRSRKKTLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATP  +E E  + +  EQIIRPTGL+DPP++
Sbjct: 364 GFRLPSALDNRPLNFEEFESKIDQMLFVSATPSDYE-EAHEMLRAEQIIRPTGLLDPPID 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N   ++  ++L+T LTKRMAEDLT+Y+ +  IRV+Y+HS++ TLE
Sbjct: 423 VRPVEGQIDDLVSEVNREIKKKGKVLITTLTKRMAEDLTDYMRDAGIRVKYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQT+GRAAR
Sbjct: 483 RAEIIRDMRLDVFDVLVGINLLREGLDIPEISLVAILDADKEGFLRSETSLIQTVGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADTIT S+++AI+ET RRRE Q  +N++H+I P ++K+ + ++I      +
Sbjct: 543 NSEGHVIMYADTITDSMRVAIEETKRRREIQQAYNEEHHITPTTIKKAVRDLISISQAAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD---EIKRL 793
             T  ++ D +  S+ +K+ K  +K L K+MH AA  LNFEEAA +RD   EIK++
Sbjct: 603 GVTNEVTKDPE--SMDEKELKKLVKELTKKMHQAAAELNFEEAAILRDRMVEIKKM 656


>gi|227824384|ref|ZP_03989216.1| excinuclease ABC subunit B [Acidaminococcus sp. D21]
 gi|226904883|gb|EEH90801.1| excinuclease ABC subunit B [Acidaminococcus sp. D21]
          Length = 698

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/656 (55%), Positives = 472/656 (71%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ++  + PSGDQP AI  L+KG+      Q+LLG TG+GKTFT+A++I+ +QRP +V+A
Sbjct: 35  FQLEAPFAPSGDQPEAIEALVKGVKEGMDTQVLLGATGTGKTFTIAQMIQKVQRPTLVIA 94

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFPHNAVEYFVSYYDYYQPEAY+P TDTYIEK+SSIN++ID++RH
Sbjct: 95  HNKTLAAQLASEFKAFFPHNAVEYFVSYYDYYQPEAYIPATDTYIEKDSSINDEIDKLRH 154

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IVVSSVSCIYG+G+ + Y   ++ L++G  V++  +L  LVK +Y+R 
Sbjct: 155 SATSALFERRDVIVVSSVSCIYGLGAPKDYYDSVLSLRVGQEVDRDAILEKLVKIRYERN 214

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG+FR  GD IE+ PS   +   R+ +FG++++ I E   LTG  I     + I+
Sbjct: 215 DLVLQRGSFRARGDVIEVIPSSYNEKGIRIELFGDEVDSIMEIDVLTGDVIDKRTHVAIF 274

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    L  A   I++ELK RL  L +EG+LLEA+RLEQR  YDLEM+E  G C 
Sbjct: 275 PASHYVTSDENLERARGDIRKELKARLTVLHEEGKLLEAERLEQRTNYDLEMMEEMGYCS 334

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR  GEPP TL  Y P+D L  +DESHVT+PQ+  MY GD  RK  L  Y
Sbjct: 335 GIENYSRHLTGRKAGEPPFTLVNYFPDDFLTVIDESHVTLPQLRAMYAGDRSRKEQLVNY 394

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+   R   I VSATP ++EL+  +  +VEQIIRPTGL+DP +E
Sbjct: 395 GFRLPSALDNRPLTFDEFQKERGQIIYVSATPAAYELDHAEQ-VVEQIIRPTGLLDPKIE 453

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI+  A+ G RIL+T LTK+MAEDLTEYL    IRVRY+HS++ T++
Sbjct: 454 VRPIKGQIDDLLGEIHKVAEAGERILVTTLTKKMAEDLTEYLAASGIRVRYLHSDIATID 513

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T++IQTIGRAAR
Sbjct: 514 RAEIIRDLRAGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 573

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD +T S+Q AI+ET RRR KQ  +NK H I P+++++K++E+I    +E+
Sbjct: 574 NAHGRVIMYADVMTGSMQRAIEETERRRAKQEAYNKAHGIVPKTIEKKVVELIKLTKVEE 633

Query: 741 AATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +     L  LS+K  +  +K + K M  AA  L+FE AA  RD++  +K 
Sbjct: 634 DGGTVKAGGVDSLKKLSEKALQKQVKLIEKNMKAAAKQLDFELAAEYRDQMILIKG 689


>gi|320107009|ref|YP_004182599.1| excinuclease ABC subunit B [Terriglobus saanensis SP1PR4]
 gi|319925530|gb|ADV82605.1| excinuclease ABC, B subunit [Terriglobus saanensis SP1PR4]
          Length = 662

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/659 (53%), Positives = 476/659 (72%), Gaps = 1/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ TDY P GDQP AI +L  G+   EK Q+LLGVTGSGKTFTMAKVI+ + RPA+V+A
Sbjct: 3   FQLATDYTPQGDQPRAIKELTAGLSEGEKHQVLLGVTGSGKTFTMAKVIQQVNRPALVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAY+P  D YIEKES+INE++D++R 
Sbjct: 63  HNKTLAAQLYHEFKQFFPNNAVEYFVSYYDYYQPEAYIPSGDLYIEKESTINEELDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER DCI+VSSVSCIYG+GS E+Y  M++ L+ G  ++++++   LV+  Y+R 
Sbjct: 123 SATRSLFERRDCIIVSSVSCIYGLGSPEAYYGMLLLLEKGQKIKREDITRRLVEILYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD IEI+P++ E+ A+R+ +FG++I+ +S+  PL G   +    + IY
Sbjct: 183 DNDFRRGTFRVRGDVIEIYPTYDEN-AFRIELFGDEIDNLSQIDPLFGTVKQKYARLPIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV       +A + I  EL     +LEKEGR++EA R+ QR  +DLEM+++ G C 
Sbjct: 242 PKSHYVVQPERKASATESILHELSEWEAQLEKEGRMMEANRIHQRTRFDLEMIKSVGYCH 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++GR PGEPPPTL +Y P D L+F+DESHVT+PQ+ GM+ GD  RK  L +Y
Sbjct: 302 GIENYSRHMSGRLPGEPPPTLLDYFPRDFLIFIDESHVTVPQLHGMWHGDRSRKGNLVDY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+F+E+       I VSATPG +EL +  G++VEQIIRPTGL+DPP+E
Sbjct: 362 GFRLPSAMDNRPLKFDEFENRTGQIIYVSATPGPYELTKAAGVVVEQIIRPTGLIDPPIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EI   + +  R+L+T LTKRMAEDL  Y  E  ++ RYMHSE++TLE
Sbjct: 422 IRPIKGQIDDLLAEIRERSTKNERVLVTTLTKRMAEDLAGYYTEVGVKCRYMHSEIETLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++++RDLR G++DVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 482 RVKLLRDLRKGEYDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSQGSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++  + ILYAD +T S++ AIDET RRR  Q+ +N++H I P+SV   I + +  I+  D
Sbjct: 542 HLEGRAILYADKMTDSMRRAIDETDRRRATQVAYNEEHGITPKSVIRPIGDALAGIIDAD 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
            A   +  D      ++++   ++  L   M  AA    FE+AA++RD +K L++  + 
Sbjct: 602 YADITMESDGLPEFATQQELDKYISGLESDMREAAKKFEFEKAAKLRDTVKELRTKEFL 660


>gi|238893826|ref|YP_002918560.1| excinuclease ABC subunit B [Klebsiella pneumoniae NTUH-K2044]
 gi|238546142|dbj|BAH62493.1| excinuclease ABC subunit B [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 673

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/664 (55%), Positives = 476/664 (71%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I++FP+  +D+A R+ +F  ++E +S F PLTG     V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG++EL++  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI L      R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++   L + 
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQ--LGQG 602

Query: 741 AATTNIS-------IDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T          ++   LS   ++ K  +  +  L  QM   A NL FEEAA+IRD++
Sbjct: 603 LAKTKAKGRGKAKVVEPAGLSAVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|322516338|ref|ZP_08069264.1| excision endonuclease subunit UvrB [Streptococcus vestibularis ATCC
           49124]
 gi|322125176|gb|EFX96565.1| excision endonuclease subunit UvrB [Streptococcus vestibularis ATCC
           49124]
          Length = 668

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/655 (53%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI+ + +P +V+A
Sbjct: 15  FHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIA 74

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYD+YQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 75  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 134

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  Q++R 
Sbjct: 135 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDIQFERN 194

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE + ++
Sbjct: 195 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRICEIESLTGRNLGEVEHLVLF 254

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I EE++ ++ + E EG+L+EAQR+ QR  YD+EML   G   
Sbjct: 255 PATHFMTNEEHMEEAIKNIMEEMEAQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 314

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR  GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 315 GVENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDY 374

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +VEQIIRPTGL+DP VE
Sbjct: 375 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLLDPEVE 433

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R+ +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 434 VRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 493

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 494 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 553

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I      +
Sbjct: 554 NSEGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKANE 613

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A     +++    +++KK+ +  +K L+KQMH AA+ L+FE AA+IRD +  LKS
Sbjct: 614 AEVAEDTVNYS--AMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLELKS 666


>gi|71907632|ref|YP_285219.1| excinuclease ABC subunit B [Dechloromonas aromatica RCB]
 gi|90110882|sp|Q47EI2|UVRB_DECAR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|71847253|gb|AAZ46749.1| Excinuclease ABC subunit B [Dechloromonas aromatica RCB]
          Length = 690

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/670 (53%), Positives = 480/670 (71%), Gaps = 8/670 (1%)

Query: 132 NNHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
           N  +  +TF    +++   + P+GDQP AI QL++G+      Q LLGVTGSGKT+TMA 
Sbjct: 5   NTGTPVVTFEGSPYRLHQPFPPAGDQPEAIRQLVEGLDDGLSFQTLLGVTGSGKTYTMAN 64

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           VI    RPA+V+APNK LAAQLYSEFK FFP N+VEYFVSYYDYYQPEAYVP  D +IEK
Sbjct: 65  VIARTGRPALVLAPNKTLAAQLYSEFKEFFPENSVEYFVSYYDYYQPEAYVPSRDLFIEK 124

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           +SSIN+ I++MR SAT+SL+ER D ++V++VSCIYGIG  + Y  MI+ +++GD ++Q+ 
Sbjct: 125 DSSINDHIEQMRLSATKSLIERRDVVIVATVSCIYGIGDRDEYHNMILTMRVGDKLDQRA 184

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           ++  L   QY+R ++   RGTFRV GD I+IFP+   + A R+S+F +++E +  F PLT
Sbjct: 185 IVKRLTDMQYERNEMDFHRGTFRVRGDIIDIFPAEHAEHAIRISLFDDEVEGMQFFDPLT 244

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           G  +       ++  SHYVTPR T+  A++ IK+EL+ R+    +  +L+EAQR+EQR  
Sbjct: 245 GHLLHKALRFTVFPASHYVTPRATVLRAVEAIKDELRERIDFFTRNNKLVEAQRIEQRTR 304

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           +DLEML+  G C+ IENYSR+ +GR  GE PPTL +Y+P D+L+F+DESHV+I Q+ GMY
Sbjct: 305 FDLEMLDQIGFCKGIENYSRHFSGRKAGESPPTLIDYLPPDALMFIDESHVSIGQVGGMY 364

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
           +GD  RK  L +YGFRLPS +DNRPL+F E+      TI VSATP  +E +Q  G +VEQ
Sbjct: 365 KGDRSRKENLVDYGFRLPSALDNRPLQFNEFEAHMRQTIFVSATPADYE-QQHAGQVVEQ 423

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           + RPTGL+DP V +R A TQV+D+  EI      G R+L+T LTKRM+EDLT++L +  I
Sbjct: 424 VARPTGLIDPEVIVRPASTQVDDLLAEIGKRIAVGERVLVTTLTKRMSEDLTDFLADNGI 483

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +VRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS
Sbjct: 484 KVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRS 543

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           + SLIQTIGRAAR+++   ILYADT+T+S+Q AI ET RRREKQ+  N +H I P+ V +
Sbjct: 544 ERSLIQTIGRAARHIHGTAILYADTVTQSMQRAIAETGRRREKQIAFNLEHGITPRGVSK 603

Query: 728 KIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKA---HLKSLRKQMHLAADNLNFEEAA 784
           KI ++ID +    +A T +    Q+ +      KA    +K L K M   A NL FE+AA
Sbjct: 604 KIKDIIDGVYDAGSAQTELKAAQQRAAYDAMDEKAVAREIKRLEKSMMECAKNLEFEKAA 663

Query: 785 RIRDEIKRLK 794
             RD++ RL+
Sbjct: 664 AARDDLFRLR 673


>gi|33592858|ref|NP_880502.1| excinuclease ABC subunit B [Bordetella pertussis Tohama I]
 gi|81836284|sp|Q7VXH4|UVRB_BORPE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|33572506|emb|CAE42082.1| excinuclease ABC subunit B [Bordetella pertussis Tohama I]
 gi|332382271|gb|AEE67118.1| excinuclease ABC subunit B [Bordetella pertussis CS]
          Length = 678

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/662 (55%), Positives = 474/662 (71%), Gaps = 1/662 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   Y P+GDQP AI  L +G+      Q LLGVTGSGKT+TMA +I  + RPA+V+A
Sbjct: 14  FHLYQPYPPAGDQPGAIDALTEGVSDGLMFQTLLGVTGSGKTYTMANMIARLGRPALVLA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++MR 
Sbjct: 74  PNKTLAAQLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRL 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER D ++V +VSCIYGIG+   Y  M++ L+ GD + ++E+L+ LV  QY R 
Sbjct: 134 SATKSLLERRDTVIVGTVSCIYGIGNPGDYHAMVLILRTGDRISRREVLARLVAMQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV  ++I+IFP+   ++A R+++F ++IE +  F PLTG+  + +    +Y
Sbjct: 194 DADFTRGVFRVRCETIDIFPAESPELALRLTLFDDEIESLELFDPLTGRVRQKLPRFTVY 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR T+  A++ IKEEL+ RL +L  +G+L+EAQRLEQR  +DLEML+  G C+
Sbjct: 254 PGSHYVTPRETVLRAIETIKEELRERLAQLIADGKLVEAQRLEQRTRFDLEMLQELGFCK 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHVTI Q+ GMYRGD  RK TL +Y
Sbjct: 314 GIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQLGGMYRGDRSRKETLVQY 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATP ++E E     +VEQ++RPTGLVDP VE
Sbjct: 374 GFRLPSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHADN-VVEQVVRPTGLVDPIVE 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI+  A    R+L+T LTKRMAEDLT++L E  +RVRY+HS++ T+E
Sbjct: 433 VRPAHTQVDDLLGEIHKRAALQERVLVTTLTKRMAEDLTDFLSEHGVRVRYLHSDIDTVE 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 493 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD IT S++ AIDET RRR KQ++HN  H I  + V + + E+ID ++   
Sbjct: 553 NLNGRAILYADRITDSMRRAIDETERRRAKQIQHNTDHGITARGVSKAVRELIDGVVAPA 612

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
                 S    ++   +K     ++ L K M   A NL FE+AA  RD +  LKS     
Sbjct: 613 GHDALESAVPAEVLTDEKAMAREIRRLEKLMMDHARNLEFEQAAAARDALNALKSRLLLD 672

Query: 801 GL 802
           G+
Sbjct: 673 GV 674


>gi|325205898|gb|ADZ01351.1| excinuclease ABC, B subunit [Neisseria meningitidis M04-240196]
          Length = 699

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/663 (53%), Positives = 481/663 (72%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 35  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 94

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 95  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 154

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ RND I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 155 SATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 214

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    ++
Sbjct: 215 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 274

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 275 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 334

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 335 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 394

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P TI VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 395 GFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 453

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   ++G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 454 IRPVATQVDDLMSEINDRIEKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 513

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 514 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 573

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++  I PQ +K+++ ++ID +  E+
Sbjct: 574 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEQGIVPQQIKKQVKDIIDGVYHEE 633

Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +        ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K +
Sbjct: 634 DGSKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRDIKEN 693

Query: 797 PYF 799
             F
Sbjct: 694 LLF 696


>gi|254805128|ref|YP_003083349.1| excinuclease ABC subunit B [Neisseria meningitidis alpha14]
 gi|254668670|emb|CBA06367.1| excinuclease ABC subunit B [Neisseria meningitidis alpha14]
          Length = 696

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/667 (54%), Positives = 479/667 (71%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 35  FKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 94

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 95  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 154

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 155 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 214

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 215 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 274

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A   IKEEL+ R+    KE R +E QR+EQR  +DLEML   G C+
Sbjct: 275 PSSHYVTPRDTVLRACDSIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 334

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 335 GIENYSRHFSGKKEGEPPPTLMDYLPSNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 394

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 395 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 453

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 454 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 513

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 514 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 573

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 574 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 633

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +        +Q     K G+ H        +  L K M  AA +L FEEAA +RD I+ 
Sbjct: 634 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRG 689

Query: 793 LKSSPYF 799
           +K +  F
Sbjct: 690 IKENLLF 696


>gi|225077183|ref|ZP_03720382.1| hypothetical protein NEIFLAOT_02238 [Neisseria flavescens
           NRL30031/H210]
 gi|224951474|gb|EEG32683.1| hypothetical protein NEIFLAOT_02238 [Neisseria flavescens
           NRL30031/H210]
          Length = 675

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/663 (53%), Positives = 480/663 (72%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLYQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLCACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                      ++ +    +++     +  L K M  AA +L FEEAA IRD I+ +K +
Sbjct: 610 DGGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVIRDRIRGIKEN 669

Query: 797 PYF 799
             F
Sbjct: 670 LLF 672


>gi|229541499|ref|ZP_04430559.1| excinuclease ABC, B subunit [Bacillus coagulans 36D1]
 gi|229325919|gb|EEN91594.1| excinuclease ABC, B subunit [Bacillus coagulans 36D1]
          Length = 666

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/662 (55%), Positives = 478/662 (72%), Gaps = 2/662 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI QL+ GI + +K+Q LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 6   FELVSKYKPEGDQPEAIRQLVDGIRAGKKIQTLLGATGTGKTFTVSNVIKEVNKPTLVIA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK++SIN++ID++RH
Sbjct: 66  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDASINDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ERND I+++SVSCIYG+GS E Y +++V L+ G  +E+ +LL  LV  QY R 
Sbjct: 126 SATSALFERNDVIIIASVSCIYGLGSPEEYRELVVSLRTGMEIERNQLLRRLVDIQYARN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ I + + + I+
Sbjct: 186 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEIIGDRDHVAIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I+ EL+ RL EL   G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 246 PASHFVTRNEKLQIAIRNIEAELEERLKELRDNGKLLEAQRLEQRTRYDLEMMREMGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D LL +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 306 GIENYSRHLALRPPGSTPYTLLDYFPKDFLLVIDESHVTLPQIRGMFNGDQARKQVLVDH 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       I VSATPG +ELE     +VEQIIRPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLRFEEFEKHISQMICVSATPGPYELEHTPK-MVEQIIRPTGLLDPEIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  I+V+Y+HSEVKTLE
Sbjct: 425 VRPIEGQIDDLLGEIQDRIEKNERVLVTTLTKKMAEDLTDYLKEVGIKVQYLHSEVKTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+D +VGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RIEIIRDLRLGKYDCIVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD IT S++ AI ET RRR  Q  +NKKH I P+++++ I + I      +
Sbjct: 545 NANGKVIMYADRITDSMEKAISETKRRRTVQEAYNKKHGITPKTIQKDIRDTIHATYAAE 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
            AT   + + ++  L+K++    +  L ++M  AA  L+FE+AAR RD +  LK+     
Sbjct: 605 DATPYEAEETKK-PLTKEERIRMIAELEEKMKEAAKALDFEQAARYRDALLELKAGDDHN 663

Query: 801 GL 802
           G+
Sbjct: 664 GI 665


>gi|319410597|emb|CBY90966.1| UvrABC system protein B Protein uvrB; Excinuclease ABC subunit B
           [Neisseria meningitidis WUE 2594]
          Length = 699

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/667 (54%), Positives = 479/667 (71%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 35  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 94

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 95  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 154

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 155 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 214

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 215 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 274

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A   IKEEL+ R+    KE R +E QR+EQR  +DLEML   G C+
Sbjct: 275 PSSHYVTPRDTVLRACDSIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 334

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 335 GIENYSRHFSGKKEGEPPPTLMDYLPSNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 394

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 395 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 453

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 454 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 513

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 514 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 573

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 574 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 633

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +        +Q     K G+ H        +  L K M  AA +L FEEAA +RD I+ 
Sbjct: 634 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 689

Query: 793 LKSSPYF 799
           +K +  F
Sbjct: 690 IKENLLF 696


>gi|257056574|ref|YP_003134406.1| excinuclease ABC subunit B [Saccharomonospora viridis DSM 43017]
 gi|256586446|gb|ACU97579.1| Excinuclease ABC subunit B [Saccharomonospora viridis DSM 43017]
          Length = 719

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/693 (52%), Positives = 491/693 (70%), Gaps = 32/693 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQPAAI +L + I + EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 28  FKVVSDYEPAGDQPAAIDELERRIKAGEKHVVLLGATGTGKSATTAWLIERLQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN+ ++R+RH
Sbjct: 88  HNKTLAAQLANELREFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D IVVSSVSCIYG+G+ +SY     +L +G+ V++   L +LV  QY R 
Sbjct: 148 SATMNLLSRRDVIVVSSVSCIYGLGTPQSYLDRSTRLAVGEEVDRDTFLRALVDVQYTRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P++ E++A RV  FG++I+++   +PLTG  +R V+ ++I+
Sbjct: 208 DLAFERGTFRVRGDTVEIIPAY-EELAIRVEFFGDEIDKLYYLHPLTGDIVREVDEVRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A++ I+ EL+ ++ +LE++G+LLEAQRL  R TYD+EM+   G C 
Sbjct: 267 PATHYVASPERMEKAIRGIEAELEEQIAKLERQGKLLEAQRLRMRTTYDIEMMRQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG  P TL +Y PED LL +DESHVT+PQI GMY GD  RK TL E+
Sbjct: 327 GIENYSRHIDGREPGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDASRKRTLVEH 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE++     T+ +SATPG +E+ Q  G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSALDNRPLTWEEFSDRIGQTVYLSATPGPYEMSQTGGEFVEQVIRPTGLVDPEVI 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+  EI + A++  R+L+T LTK+MAEDLT+YL E  IRVRY+HSE+ TL 
Sbjct: 447 VKPTEGQIDDLVHEIRIRAEKDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSEIDTLR 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LR G FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 507 RVELLRQLRSGDFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YADTIT S++ AIDET RRREKQ+ +NK+H I+P+ +++KI +++D +  E 
Sbjct: 567 NVSGQVHMYADTITDSMRYAIDETNRRREKQIAYNKEHGIDPKPLRKKIADILDRVYTE- 625

Query: 741 AATTNISIDAQQLSLSKKKGKAH----------------------------LKSLRKQMH 772
           A  + + I+      +  +GK                              ++ L  QM 
Sbjct: 626 AEDSELGIEVGGSGRNVSRGKTPEQGDRKRSSGVLVDRDVSNMPRAELADLIRQLTDQMM 685

Query: 773 LAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
            AA +L FE AAR+RDEI  LK     +G+D++
Sbjct: 686 QAARDLQFELAARLRDEISELKKE--LRGMDEA 716


>gi|187931548|ref|YP_001891532.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712457|gb|ACD30754.1| excinuclease ABC, B subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 668

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/660 (54%), Positives = 479/660 (72%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T Y P+GDQP AI  L+ GI++  + Q+LLGVTGSGKT+TMA VI+  Q+P +++A
Sbjct: 4   FNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++MR 
Sbjct: 64  HNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LERND I+V++VS IYG+G  E Y+QM++ LK+G+ +  K+  + LV+ QY R 
Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYTQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +K++++    I+
Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRATIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            ++HYV  +      ++ IK+ELK R+   EKEG+LLEAQR+EQR  YD+EM++  G C 
Sbjct: 244 PSTHYVASKERKEIVIEDIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELGYCT 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RK+ L  Y
Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   V+Q+IRPTGL+DP V 
Sbjct: 364 GFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDPEVF 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QVED   EIN A  +  R+L+T LTK+M E+LTEYL E  + VRY+HS++ T+E
Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERVLITTLTKKMVENLTEYLSEHGVNVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRSK SLIQTIGR AR
Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSKKSLIQTIGRVAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738
           N N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D  P + 
Sbjct: 543 NQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSPEMQ 602

Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + A   N+ +    + +S   G       +K+L K+M   A  L FE+A  IRD+I  +K
Sbjct: 603 KRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKITEIK 662


>gi|297571462|ref|YP_003697236.1| excinuclease ABC subunit B [Arcanobacterium haemolyticum DSM 20595]
 gi|296931809|gb|ADH92617.1| excinuclease ABC, B subunit [Arcanobacterium haemolyticum DSM
           20595]
          Length = 682

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/662 (53%), Positives = 486/662 (73%), Gaps = 10/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y PSGDQPAAI +L + I++ EK  +LLG TG+GK+ T A +IE +QRP +++ 
Sbjct: 14  FEVISEYTPSGDQPAAIKELAERINAGEKDIVLLGATGTGKSATTAWLIEQIQRPTLIIE 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ+ +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH
Sbjct: 74  PNKTLAAQMAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ R D +VV+SVSCIYG+G+ + Y   +V + +G  +E+  LL   V  QY R 
Sbjct: 134 SATNSLITRRDTVVVASVSCIYGLGTPQEYVDRMVDVHVGQELERDALLKQFVTMQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E++A R+  FG++I+ I+  +PLTG  +R V+   I+
Sbjct: 194 DMAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDSIALLHPLTGNVVRQVDHAYIF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +N+A+  I++EL+ RL EL ++ +LLEAQRLE R TYDLEM+   GSC 
Sbjct: 253 PASHYVAGEERMNSAIASIEDELRDRLGELREQNKLLEAQRLEMRTTYDLEMMRNLGSCS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED +L +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 313 GIENYSRHIDGRGPGTPPNTLLDYFPEDFVLIIDESHVTVPQIGAMYEGDMSRKRTLVEF 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+F E+      T+ +SATPG +E+E   G  VEQIIRPTGLVDP + 
Sbjct: 373 GFRLPSAMDNRPLKFAEFLERIGQTVYLSATPGKYEMELSDGY-VEQIIRPTGLVDPEII 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ +++ +  ++  R+L+T LTK+MAEDLT+Y  ER ++V Y+HS+V TL 
Sbjct: 432 VKPTKGQIDDLLEQVRIRTERDERVLITTLTKKMAEDLTDYFAERGVKVEYLHSDVDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LRLGKFDVLVGINLLREGLD+PE  LVAILDADK+GFLRS TSLIQTIGRAAR
Sbjct: 492 RVELLRELRLGKFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSTTSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD+IT +++ AIDET RRREKQL +N+KH I+P+ +++KI +V D ++ ED
Sbjct: 552 NVSGQVHMYADSITPNMKEAIDETNRRREKQLAYNEKHGIDPKPLRKKIADVTDMLVRED 611

Query: 741 AATTNISIDAQQLSLSKKK---GKAH-----LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             T  +     +   S K       H     L  L++QM +AA++L FE AAR+RDEI  
Sbjct: 612 IDTDELLKGGYRKEKSVKDRLPADGHEIELLLVELQEQMRVAAEHLQFELAARLRDEIND 671

Query: 793 LK 794
           +K
Sbjct: 672 VK 673


>gi|309378820|emb|CBX22525.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 675

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/667 (54%), Positives = 480/667 (71%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++ Q++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIAQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPKII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +        +Q     K G+ H        +  L K M  AA +L FEEAA +RD I+ 
Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665

Query: 793 LKSSPYF 799
           +K S  F
Sbjct: 666 IKESMLF 672


>gi|167626315|ref|YP_001676815.1| excinuclease ABC subunit B [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596316|gb|ABZ86314.1| excinuclease ABC, B subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 668

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/660 (54%), Positives = 478/660 (72%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T Y P+GDQP AI  L++GI++  + Q+LLGVTGSGKT+TMA VI+  Q+P +++A
Sbjct: 4   FNLVTKYAPAGDQPNAIKSLVEGINNGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLIVA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++MR 
Sbjct: 64  HNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY R 
Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +KI+ +    I+
Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKIKTLHRATIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            ++HYV  +   +  ++ IK ELK R+   E+EG+LLEAQR+EQR  YD+EM++  G C 
Sbjct: 244 PSTHYVASKERKDIVIEEIKAELKERVKYFEEEGKLLEAQRIEQRTKYDIEMIQELGYCT 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RK+ L  Y
Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   VEQ+IRPTGL+DP V 
Sbjct: 364 GFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVEQVIRPTGLLDPEVF 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QVED   EIN A  +  RIL+T LTK+MAE+LTEYL E  + VRY+HS++ T+E
Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERILITTLTKKMAENLTEYLSEHGVNVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR AR
Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738
           N N + ILYAD +TKS++ A+DET RRR+ Q EHNKK+NI P+++ + I +++D  P + 
Sbjct: 543 NQNGRAILYADVVTKSMKKAMDETLRRRQLQDEHNKKNNITPKTIIKSIDDMLDSSPEMQ 602

Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + A   N  +    + +S   G       +K+L K+M   A  L FE+A  IRD+I  +K
Sbjct: 603 KRAYKNNSRLKVDDVDVSAILGMTEASKVIKALEKRMRAYAKELEFEQATAIRDKITEIK 662


>gi|15677197|ref|NP_274350.1| excinuclease ABC subunit B [Neisseria meningitidis MC58]
 gi|9911092|sp|O33395|UVRB_NEIMB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|7226574|gb|AAF41706.1| excinuclease ABC, subunit B [Neisseria meningitidis MC58]
 gi|325200045|gb|ADY95500.1| excinuclease ABC, B subunit [Neisseria meningitidis H44/76]
          Length = 675

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/663 (53%), Positives = 481/663 (72%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ RND I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P TI VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   ++G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIEKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++  I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEQGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +        ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K +
Sbjct: 610 DGSKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRDIKEN 669

Query: 797 PYF 799
             F
Sbjct: 670 LLF 672


>gi|304395751|ref|ZP_07377634.1| excinuclease ABC, B subunit [Pantoea sp. aB]
 gi|304357045|gb|EFM21409.1| excinuclease ABC, B subunit [Pantoea sp. aB]
          Length = 673

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/663 (55%), Positives = 472/663 (71%), Gaps = 8/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVE+FVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEFFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIDSVVPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L +  +LLE QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEDIKVELADRRRVLLENNKLLEEQRITQRTQFDLEMMSELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+ R PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSARGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG +ELE+    +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGKYELEKSGDEVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI        R+L+TVLTKRMAEDLTEYL E   +VRY+HS++ T+E
Sbjct: 425 VRPVGTQVDDLLSEIRQRVAINERVLVTVLTKRMAEDLTEYLTEHGEKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----DPI 736
           N+N K ILY D IT S+  AI+ET RRREKQ  HN+++ I PQ + +KI +++    + +
Sbjct: 545 NINGKAILYGDKITPSMARAIEETERRREKQQLHNEQNGIVPQGLNKKITDILELGNNIV 604

Query: 737 LLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                A      +AQ L+    L+ +  +  +  L  QM   A NL FE+AA +RD++  
Sbjct: 605 KTRGKAKPARPGEAQALADFKLLTPQALQKKIHELEGQMQQHAQNLEFEQAANVRDQLHE 664

Query: 793 LKS 795
           L++
Sbjct: 665 LRT 667


>gi|322373405|ref|ZP_08047941.1| excinuclease ABC subunit B [Streptococcus sp. C150]
 gi|321278447|gb|EFX55516.1| excinuclease ABC subunit B [Streptococcus sp. C150]
          Length = 668

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/655 (53%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI+ + +P +V+A
Sbjct: 15  FHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIA 74

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYD+YQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 75  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 134

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  Q++R 
Sbjct: 135 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDIQFERN 194

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE + ++
Sbjct: 195 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRICEIESLTGRNLGKVEHLVLF 254

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I  E++ ++ + E EG+L+EAQR+ QR  YD+EML   G   
Sbjct: 255 PATHFMTNEEHMEEAIKNIMAEMEAQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 314

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR  GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 315 GVENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDY 374

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +VEQIIRPTGL+DP VE
Sbjct: 375 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLLDPEVE 433

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN+  ++G R+ +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 434 VRPTMGQMDDLLGEINVRTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 493

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 494 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 553

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I      +
Sbjct: 554 NSEGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGIVPQTIKKEIRDLISITKANE 613

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A     ++D    +++KK+ +  +K L+KQMH AA+ L+FE AA+IRD +  LKS
Sbjct: 614 AEVAEDTVDYS--AMNKKERQEAVKKLQKQMHEAAELLDFELAAQIRDMVLELKS 666


>gi|317405208|gb|EFV85547.1| UvrABC system protein B [Achromobacter xylosoxidans C54]
          Length = 679

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/645 (56%), Positives = 467/645 (72%), Gaps = 7/645 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   Y P+GDQP AI  L++G+      Q LLGVTGSGKT+TMA VI  + RPA+V+A
Sbjct: 18  FHLYQPYPPAGDQPGAIEGLIQGVQDGLMYQTLLGVTGSGKTYTMANVIAQLGRPALVLA 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++MR 
Sbjct: 78  PNKTLAAQLYAEMREFFPKNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRL 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER D I+V +VSCIYGIG+   Y  M++ L+ GD + ++E+L+ LV  QY R 
Sbjct: 138 SATKSLLERRDTIIVGTVSCIYGIGNPGDYHAMVLILRAGDQISRREILARLVAMQYTRN 197

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV G++I+IFP+   ++A R+++F ++IE +  F PLTG+  + +    +Y
Sbjct: 198 DAEFTRGVFRVRGETIDIFPAESAELALRLTLFDDEIESLELFDPLTGRIRQKLPRFTVY 257

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR T+  A++ IKEEL+ R      +G L+EAQRLEQR  +DLEML+  G C+
Sbjct: 258 PGSHYVTPRDTVLRAIETIKEELRERTKRFVDDGHLVEAQRLEQRTRFDLEMLQELGFCK 317

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHVTI Q+S MYRGD  RK TL +Y
Sbjct: 318 GIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQLSAMYRGDRSRKETLVQY 377

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATP ++E E     +VEQ++RPTGLVDP VE
Sbjct: 378 GFRLPSALDNRPLKLEEFEARMRQCVFVSATPAAYEKEHADN-VVEQVVRPTGLVDPIVE 436

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +  ARTQV+D+  +I     QG R+L+T LTKRMAEDLT++L E  +RVRY+HS++ T+E
Sbjct: 437 VLPARTQVDDLLGQIKARTSQGERVLVTTLTKRMAEDLTDFLTEHGVRVRYLHSDIDTVE 496

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 497 RVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 556

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N   ILYAD IT S+Q A++ET+RRR KQL+ N  H I  + V++ + E+ID I+   
Sbjct: 557 NLNGHAILYADRITDSMQRAMEETSRRRAKQLQFNADHGITARGVQKAVRELIDGIV--- 613

Query: 741 AATTNISIDA---QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
           A   + +++A    +L   +K     +K L K M   A NL FE+
Sbjct: 614 APVQHDALEAAVPAELLKDEKALAREIKRLEKLMMDHARNLEFEQ 658


>gi|312863813|ref|ZP_07724051.1| excinuclease ABC, B subunit [Streptococcus vestibularis F0396]
 gi|311101349|gb|EFQ59554.1| excinuclease ABC, B subunit [Streptococcus vestibularis F0396]
          Length = 663

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/655 (53%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI+ + +P +V+A
Sbjct: 10  FHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYD+YQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE + ++
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRICEIESLTGRNLGEVEHLVLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I EE++ ++ + E EG+L+EAQR+ QR  YD+EML   G   
Sbjct: 250 PATHFMTNEEHMEEAIKNIMEEMEAQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR  GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 310 GVENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R+ +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPIMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I      +
Sbjct: 549 NSEGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKANE 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A     +++    +++KK+ +  +K L+KQMH AA+ L+FE AA+IRD +  LKS
Sbjct: 609 AEVAEDTVNYS--AMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLELKS 661


>gi|90411666|ref|ZP_01219676.1| excinuclease ABC subunit B [Photobacterium profundum 3TCK]
 gi|90327556|gb|EAS43909.1| excinuclease ABC subunit B [Photobacterium profundum 3TCK]
          Length = 674

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/665 (53%), Positives = 479/665 (72%), Gaps = 13/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI    RP  +MA
Sbjct: 5   FSLSSGFSPAGDQPTAINQLLEGLDAGLAHQTLLGVTGSGKTFTIANVIAEANRPTFIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+++SVS IYG+G  +SY +M++ ++ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERRDVIIIASVSAIYGLGDPDSYLKMMLHVRRGDMLNQRDILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I++FP+  E  A R+ +F +++E IS F PLTG  + +N+    I
Sbjct: 185 DVSFERGHFRVRGEVIDVFPAESEHDAIRIELFDDEVECISVFDPLTGAILEKNLPRCTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK+EL +R  +L    +L+E QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPREKILEAIEKIKDELVVRRKQLMDNNKLVEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+ QI  MYRGD  RK  L E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPADGLLILDESHVTVSQIGAMYRGDRSRKENLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP++F+E+  L P TI VSATPG +E+EQ    I EQ++RPTGL+DP +
Sbjct: 365 YGFRLPSALDNRPMKFDEFASLAPQTIYVSATPGKYEIEQSGNDIAEQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI +   +G R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIREAKGERVLVTTLTKRMSEDLTEYLAEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+RDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEILRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  + ILY D IT S++ AI ET RRREKQ  HN+K+ I PQ + +K+ ++++  L +
Sbjct: 545 RNLEGRAILYGDKITGSMERAISETNRRREKQTIHNEKNGITPQGLNKKVGDILE--LGK 602

Query: 740 DAATTNISIDAQQLSLSKKKG----------KAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            ++ + ++  AQ   +++ KG          +  ++ L  +M+  A NL FE+AA  RD+
Sbjct: 603 PSSRSRMNKAAQLNRVAESKGTYVNLSPQQLEVEIQRLETEMYDLAQNLEFEKAAETRDK 662

Query: 790 IKRLK 794
           I  L+
Sbjct: 663 IHTLR 667


>gi|296121246|ref|YP_003629024.1| excinuclease ABC subunit B [Planctomyces limnophilus DSM 3776]
 gi|296013586|gb|ADG66825.1| excinuclease ABC, B subunit [Planctomyces limnophilus DSM 3776]
          Length = 707

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/658 (55%), Positives = 479/658 (72%), Gaps = 12/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + + P+GDQP AI  L+KG+ +  K Q LLGVTGSGKTFTMA VIE +QRPA+V++
Sbjct: 4   FQIDSRFRPAGDQPKAIEALVKGLKNDRKNQTLLGVTGSGKTFTMANVIEQLQRPALVLS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK FFPHNAV YFVSYYDYYQPEAY+P+ D YIEK+SSINE+IDR+R 
Sbjct: 64  HNKTLAAQLYAEFKEFFPHNAVTYFVSYYDYYQPEAYIPQRDIYIEKDSSINEEIDRLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT +L+ R D IVV+SVSCIYG+GS + Y +M++ L+ G+S+++ ELL  L   QY R 
Sbjct: 124 LATSALVSRRDVIVVASVSCIYGLGSPKDYLEMMIPLRKGESIDRDELLRKLCDIQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD I+++P++ E+ A+R+ ++G++I+++S  +P+T  ++R++E I IY
Sbjct: 184 DHAPERANFRVRGDVIDVWPAY-EEFAYRIELWGDEIDKLSIIHPVTSDEVRSLEEIYIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HYV P   + +A+  I++EL  +L + +KEG+LLEAQRL  R  +DLE+L   G C 
Sbjct: 243 PAKHYVLPEDRVASAVAEIEKELAEQLEKFKKEGKLLEAQRLNARTRHDLELLREVGFCP 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR PGEPP TL ++ P D L F+DESHVTIPQI  M+ GD  RK TL E+
Sbjct: 303 GIENYSRALSGRPPGEPPYTLLDFFPNDFLTFIDESHVTIPQIRAMFNGDHARKTTLVEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP  +DNRPL+F+EW   R   I VSATP  WELEQ QG IVEQ+IRPTGLVDP + 
Sbjct: 363 GFRLPMALDNRPLKFDEWETRRKQAIFVSATPSDWELEQSQGEIVEQVIRPTGLVDPVIH 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I  +R QV+ +   I   A++  R+L+T LTK++ EDLT YL E  +R  ++HSE+   E
Sbjct: 423 IHPSRGQVQHLMGLIKGRAEKDERVLVTALTKKLCEDLTAYLREEGLRCAWLHSELDAFE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIR+LR GK+D LVG+NLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR+AR
Sbjct: 483 RVEIIRELREGKYDTLVGVNLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGRSAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN++V LYAD++T S+QLAIDET RRRE Q+ +NKKH I P+++++ I   I+    ED
Sbjct: 543 NVNAEVYLYADSVTNSMQLAIDETNRRRELQVAYNKKHGITPETIRKSIRRGIE----ED 598

Query: 741 AATTNISIDAQQLSLSKKKGK----AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A    I    QQ S    + +     ++  L  +M  AA++L+FE AA++RD I +LK
Sbjct: 599 AEANKI---VQQASGKSSEVEYVTLEYISELEAEMLKAAESLDFERAAQLRDRILQLK 653


>gi|329118198|ref|ZP_08246908.1| excision endonuclease subunit UvrB [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465619|gb|EGF11894.1| excision endonuclease subunit UvrB [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 675

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/671 (54%), Positives = 483/671 (71%), Gaps = 21/671 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P TI VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H+I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHSIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSLSKKK----GKAH--------LKSLRKQMHLAADNLNFEEAARIRD 788
                   D+ +  L  K     G+ H        +  L K M  AA +L FEEAA +RD
Sbjct: 610 --------DSGKGRLKGKSKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRD 661

Query: 789 EIKRLKSSPYF 799
            I+ +K +  F
Sbjct: 662 RIRNIKENLLF 672


>gi|332799596|ref|YP_004461095.1| UvrABC system protein B [Tepidanaerobacter sp. Re1]
 gi|332697331|gb|AEE91788.1| UvrABC system protein B [Tepidanaerobacter sp. Re1]
          Length = 665

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/658 (55%), Positives = 483/658 (73%), Gaps = 2/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI +L +GI+   K Q LLG TG+GKTFT+A +I+ +QRP +V+A
Sbjct: 4   FEVVSEYIPRGDQPQAIQRLAEGINKGYKFQTLLGATGTGKTFTIAHLIQQVQRPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAY+ +TDTYIEK++SIN++ID++RH
Sbjct: 64  HNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D ++V+SVSCIY +GS   Y   +V L+ G  +++ E++  LV+ Q+ R 
Sbjct: 124 SATAALFERRDVVIVASVSCIYSLGSPIDYENQVVSLRSGMEIDRDEVVRKLVEIQFNRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I   RGTFR+ GD +EIFP+   + A RV  FG+ I+ I EF  LTG+ I     + I+
Sbjct: 184 EIDFHRGTFRLRGDILEIFPASFTEKAVRVEFFGDIIDRILEFDTLTGEIIGERNHVSIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY TP+  +  A+K I+ EL+ RL EL+ +G++LEA RLEQR  YD+EML   G C+
Sbjct: 244 PASHYATPKDKIEVAIKSIEMELEQRLAELKDQGKVLEAARLEQRTKYDIEMLREMGYCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GE P TL +Y P+D L+ +DESHVT+PQI  M+ GD  RK +L E+
Sbjct: 304 GIENYSRHLSGRKAGEAPFTLLDYFPKDYLIIIDESHVTLPQIHAMWAGDRSRKESLIEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I +SATP S+EL++    +VEQIIRPTGLVDP VE
Sbjct: 364 GFRLPSAFDNRPLVFEEFEERVNQLIFLSATPASYELKKSAQ-VVEQIIRPTGLVDPEVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI L A++  R+L+T LTKRMAEDLT+YL E  IRVRY+HSE+ TLE
Sbjct: 423 VRPVKGQIDDLIWEIKLRAKKNQRVLVTTLTKRMAEDLTDYLKEAGIRVRYLHSEIHTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFD LVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RLQIIRDLRLGKFDCLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +VI+YADTIT+S+  AI ET RRR+ QL++NKKH I P +VK+ + ++I+   + +
Sbjct: 543 NVDGRVIMYADTITQSMARAISETNRRRKIQLDYNKKHGIVPTTVKKSVRDLIEATKVAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
             T  +  +     +SKK+ K  +++L +QM+ AA  L FE+AA +RD I  +K+  +
Sbjct: 603 EKTDYLP-EKDITKMSKKELKTFVENLERQMNDAAKKLEFEKAAELRDLIFEIKAEAF 659


>gi|325266917|ref|ZP_08133588.1| excision endonuclease subunit UvrB [Kingella denitrificans ATCC
           33394]
 gi|324981658|gb|EGC17299.1| excision endonuclease subunit UvrB [Kingella denitrificans ATCC
           33394]
          Length = 712

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/663 (53%), Positives = 480/663 (72%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 48  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 107

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 108 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 167

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 168 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 227

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 228 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 287

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 288 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 347

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 348 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 407

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 408 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 466

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 467 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 526

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 527 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 586

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 587 NVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYHEE 646

Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K  
Sbjct: 647 DSGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEG 706

Query: 797 PYF 799
             F
Sbjct: 707 LLF 709


>gi|316984134|gb|EFV63112.1| excinuclease ABC, B subunit [Neisseria meningitidis H44/76]
 gi|325140446|gb|EGC62967.1| excinuclease ABC, B subunit [Neisseria meningitidis CU385]
 gi|325144530|gb|EGC66829.1| excinuclease ABC, B subunit [Neisseria meningitidis M01-240013]
          Length = 716

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/663 (53%), Positives = 481/663 (72%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 52  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 111

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 112 HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 171

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ RND I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 172 SATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 231

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    ++
Sbjct: 232 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 291

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 292 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 351

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 352 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 411

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P TI VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 412 GFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 470

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   ++G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 471 IRPVATQVDDLMSEINDRIEKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 530

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 531 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 590

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++  I PQ +K+++ ++ID +  E+
Sbjct: 591 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEQGIVPQQIKKQVKDIIDGVYHEE 650

Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +        ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K +
Sbjct: 651 DGSKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRDIKEN 710

Query: 797 PYF 799
             F
Sbjct: 711 LLF 713


>gi|218290403|ref|ZP_03494533.1| excinuclease ABC, B subunit [Alicyclobacillus acidocaldarius LAA1]
 gi|218239531|gb|EED06725.1| excinuclease ABC, B subunit [Alicyclobacillus acidocaldarius LAA1]
          Length = 663

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/653 (55%), Positives = 476/653 (72%), Gaps = 1/653 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ TD  P GDQP AI  L+ G++S  + Q LLGVTGSGKTFTMA +I  + RP +V+A
Sbjct: 8   FELVTDMKPQGDQPQAIEALVDGVYSGLRHQTLLGVTGSGKTFTMANIIAEVNRPTLVIA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF+ FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK++ IN++ID++RH
Sbjct: 68  HNKTLAAQLAAEFRAFFPNNAVEYFVSYYDYYQPEAYIPSTDTYIEKDAKINDEIDKLRH 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT ++LERND +VV+SVS IYG+G+ E Y   ++ L++G ++++ ++L  LV  QY R 
Sbjct: 128 SATAAILERNDVLVVASVSAIYGLGNPEEYRHHVLSLRVGATMDRNQMLRKLVDMQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++ A RV  FG++I+ ISE   LTG+ +       ++
Sbjct: 188 DINFTRGTFRVRGDVVEIFPASRDENAIRVEFFGDEIDRISEINVLTGEVVARRSHFSVF 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT R  L  A++ I+ EL+ RL EL  +G+LLEAQRLEQR  YD+EM+   G C 
Sbjct: 248 PASHYVTSRERLERAIERIRAELEERLAELRAQGKLLEAQRLEQRTHYDIEMMLEMGFCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  GEPP TL +Y P   L F+DESHVTIPQ+ GMY GD  RK TL E+
Sbjct: 308 GIENYSRHLEGREAGEPPYTLLDYFPPGFLTFIDESHVTIPQLRGMYNGDRSRKLTLIEH 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+       I VSATPG +E ++ Q  IVEQIIRPTGLVDP + 
Sbjct: 368 GFRLPSAADNRPLKFEEFERAVGQCIYVSATPGPYE-QKHQQRIVEQIIRPTGLVDPEIH 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  I+VRY+HS++KT+E
Sbjct: 427 VRPVKGQIDDLVGEIRERIRRDERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSDIKTIE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ I+RDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 487 RMVILRDLRRGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSHTSLIQTIGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTIT+S+++AI+ET RRR+KQ+ +N++H I PQ+V++ + +VI+   + +
Sbjct: 547 NANGTVIMYADTITESMRIAIEETERRRQKQIAYNREHGITPQTVRKAVRDVIESTKVAE 606

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +    +++  +   LS ++ K  +  L ++M  AA  L FE AA +RD I  L
Sbjct: 607 SEEDYVAVAEKAQKLSGRERKELIAKLEQEMKAAAKALEFERAAELRDMIMEL 659


>gi|208779831|ref|ZP_03247175.1| excinuclease ABC, B subunit [Francisella novicida FTG]
 gi|208744286|gb|EDZ90586.1| excinuclease ABC, B subunit [Francisella novicida FTG]
          Length = 668

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/660 (54%), Positives = 479/660 (72%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T Y P+GDQP AI  L+ GI++  + Q+LLGVTGSGKT+TMA VI+  Q+P +++A
Sbjct: 4   FNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++MR 
Sbjct: 64  HNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY R 
Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +K++++    I+
Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRATIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            ++HYV  +      ++ IK+ELK R+   EKEG+LLEAQR+EQR  YD+EM++  G C 
Sbjct: 244 PSTHYVASKERKEIVIEEIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELGYCT 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RK+ L  Y
Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   V+Q+IRPTGL+DP V 
Sbjct: 364 GFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDPEVF 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QVED   EIN A  +  R+L+T LTK+MAE+LTEYL E  + VRY+HS++ T+E
Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERVLITTLTKKMAENLTEYLSEHGVNVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR AR
Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738
           N N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D  P + 
Sbjct: 543 NQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSPEMQ 602

Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + A   N+ +    + +S   G       +K+L K+M   A  L FE+A  IRD+I  +K
Sbjct: 603 KRAYKNNLRLKVDDVDVSAILGMTEAMKVIKALEKRMRAYAKELEFEKATTIRDKITEIK 662


>gi|240016341|ref|ZP_04722881.1| excinuclease ABC subunit B [Neisseria gonorrhoeae FA6140]
 gi|240080461|ref|ZP_04725004.1| excinuclease ABC subunit B [Neisseria gonorrhoeae FA19]
 gi|240113169|ref|ZP_04727659.1| excinuclease ABC subunit B [Neisseria gonorrhoeae MS11]
 gi|240115928|ref|ZP_04729990.1| excinuclease ABC subunit B [Neisseria gonorrhoeae PID18]
 gi|240118225|ref|ZP_04732287.1| excinuclease ABC subunit B [Neisseria gonorrhoeae PID1]
 gi|240123774|ref|ZP_04736730.1| excinuclease ABC subunit B [Neisseria gonorrhoeae PID332]
 gi|240125963|ref|ZP_04738849.1| excinuclease ABC subunit B [Neisseria gonorrhoeae SK-92-679]
 gi|254493961|ref|ZP_05107132.1| UvrABC system protein B [Neisseria gonorrhoeae 1291]
 gi|260440258|ref|ZP_05794074.1| excinuclease ABC subunit B [Neisseria gonorrhoeae DGI2]
 gi|268596600|ref|ZP_06130767.1| UvrABC system protein B [Neisseria gonorrhoeae FA19]
 gi|268599249|ref|ZP_06133416.1| UvrABC system protein B [Neisseria gonorrhoeae MS11]
 gi|268601596|ref|ZP_06135763.1| UvrABC system protein B [Neisseria gonorrhoeae PID18]
 gi|268603935|ref|ZP_06138102.1| UvrABC system protein B [Neisseria gonorrhoeae PID1]
 gi|268682398|ref|ZP_06149260.1| UvrABC system protein B [Neisseria gonorrhoeae PID332]
 gi|268684556|ref|ZP_06151418.1| UvrABC system protein B [Neisseria gonorrhoeae SK-92-679]
 gi|291043553|ref|ZP_06569269.1| UvrABC system protein B [Neisseria gonorrhoeae DGI2]
 gi|2499099|sp|Q50939|UVRB_NEIGO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|555749|gb|AAA75358.1| UvrB [Neisseria gonorrhoeae]
 gi|226513001|gb|EEH62346.1| UvrABC system protein B [Neisseria gonorrhoeae 1291]
 gi|268550388|gb|EEZ45407.1| UvrABC system protein B [Neisseria gonorrhoeae FA19]
 gi|268583380|gb|EEZ48056.1| UvrABC system protein B [Neisseria gonorrhoeae MS11]
 gi|268585727|gb|EEZ50403.1| UvrABC system protein B [Neisseria gonorrhoeae PID18]
 gi|268588066|gb|EEZ52742.1| UvrABC system protein B [Neisseria gonorrhoeae PID1]
 gi|268622682|gb|EEZ55082.1| UvrABC system protein B [Neisseria gonorrhoeae PID332]
 gi|268624840|gb|EEZ57240.1| UvrABC system protein B [Neisseria gonorrhoeae SK-92-679]
 gi|291012016|gb|EFE04005.1| UvrABC system protein B [Neisseria gonorrhoeae DGI2]
 gi|317164480|gb|ADV08021.1| excinuclease ABC subunit B [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 675

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/667 (53%), Positives = 481/667 (72%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ A+DET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +        +Q     K G+ H        +  L K M  AA +L FEEAA +RD I+ 
Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665

Query: 793 LKSSPYF 799
           +K +  F
Sbjct: 666 IKENLLF 672


>gi|94986685|ref|YP_594618.1| excinuclease ABC subunit B [Lawsonia intracellularis PHE/MN1-00]
 gi|94730934|emb|CAJ54297.1| Helicase subunit of the DNA excision repair complex [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 676

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/662 (54%), Positives = 468/662 (70%), Gaps = 10/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F ++T Y P GDQP AI Q++  I S  K Q+LLGVTGSGKTFTMA VI    RPA+++
Sbjct: 5   LFTIKTQYKPQGDQPEAIKQIVSNIQSGVKDQVLLGVTGSGKTFTMANVIAQCNRPALIL 64

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY+EFK  FP+NAVEYFVSYYDYYQPEAYVP +D YIEK+SSIN+ ID++R
Sbjct: 65  APNKTLAAQLYNEFKELFPYNAVEYFVSYYDYYQPEAYVPSSDVYIEKDSSINDDIDKLR 124

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT +LL R D I+++SVSCIYG+GS E Y+++I+ ++ G  +   E+++ LV  QY+R
Sbjct: 125 HAATHALLTRRDVIIIASVSCIYGLGSPEYYARLIIPVEKGQQINMDEIITRLVDIQYQR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+   R TFRV GD +EI P++  + A R+  FGN+IEEI E  PLTG+ + NV    I
Sbjct: 185 NDMDFHRATFRVRGDVLEIIPAYEHERALRLEFFGNEIEEIREIDPLTGEVLGNVGKTVI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  SHYV+ R  L  AM  I++EL  RL + +   +L+EAQRLEQ+   DLEM++  G C
Sbjct: 245 YPASHYVSDRDNLIRAMTDIQKELCERLYDFQATNKLVEAQRLEQKTQLDLEMIQEFGYC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L GR PG+PP TL +Y P+D L F+DESH+ IPQ+ GM++GD  RK TL +
Sbjct: 305 NGIENYSRHLDGRKPGDPPSTLLDYFPKDFLFFIDESHIAIPQVGGMFKGDRSRKQTLVD 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL F E+       I VSATPG WEL++ QGII EQIIRPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLEFHEFLTRLNQVIYVSATPGPWELDRSQGIITEQIIRPTGLLDPEI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + Q+E + +E         R+L+T LTKRMAEDLT+YL   +I  RY+HS++ TL
Sbjct: 425 EVRPIKGQIESLLEECYQRVNSHERVLITTLTKRMAEDLTDYLNNMSINTRYLHSDIDTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+ II+ LR G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT GRAA
Sbjct: 485 ERMAIIKSLRTGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTGSLIQTFGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+ KVIL+ADT+TKS++ AIDET RRR  Q E N KHNI P+++++ ++   D I   
Sbjct: 545 RNVSGKVILFADTMTKSMKAAIDETRRRRALQQEWNTKHNITPKTIQKSVVTPFDMISAN 604

Query: 740 DAATTNI-----SIDAQQLSLSKKKGKA-----HLKSLRKQMHLAADNLNFEEAARIRDE 789
            ++         S+D ++L +   K        ++K L  +M  AA  L FE+AA +RD 
Sbjct: 605 TSSKKGCRKNKHSMDTKELFVITDKTSPEDITKYIKQLEYEMKEAAKELEFEKAAVLRDR 664

Query: 790 IK 791
           IK
Sbjct: 665 IK 666


>gi|171779931|ref|ZP_02920835.1| hypothetical protein STRINF_01718 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281279|gb|EDT46714.1| hypothetical protein STRINF_01718 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 663

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/665 (54%), Positives = 480/665 (72%), Gaps = 11/665 (1%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
           NNH      F++ + Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  
Sbjct: 7   NNH------FKLVSKYEPSGDQPQAIETLVNNIEGGEKAQILLGATGTGKTYTMSQVIAK 60

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           + +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+
Sbjct: 61  VNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV 120

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           N++ID++RHSAT SLLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ 
Sbjct: 121 NDEIDKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLND 180

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV  Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +
Sbjct: 181 LVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVL 240

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
            +VE + I+  +H++T    +  A++ I  E++ ++ + E EG+L+EAQR+ QR  YD+E
Sbjct: 241 GDVEHLAIFPATHFMTNEEHMEEAIQKILAEMEDQVKQFEAEGKLIEAQRIRQRTEYDVE 300

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           ML   G    +ENYS Y+ GR+ GEPP TL ++ PED L+ VDESH+T+ QI GMY GD 
Sbjct: 301 MLREMGYTNGVENYSSYMDGRSEGEPPFTLLDFFPEDFLIMVDESHMTMGQIKGMYNGDR 360

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK  L  YGFRLPS +DNRPLR EE+       + VSATPG +ELEQ    +VEQIIRP
Sbjct: 361 SRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYELEQTD-TVVEQIIRP 419

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP VE+R    Q++D+  EIN   ++G R  +T LTK+MAEDLT+YL E  ++V+Y
Sbjct: 420 TGLLDPEVEVRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKY 479

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MHS++KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  L
Sbjct: 480 MHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGL 539

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARN    VI+YAD IT+S+Q A+DET RRR+ Q+ +N++H I PQ++K+   E
Sbjct: 540 IQTIGRAARNSEGHVIMYADKITESMQKAMDETARRRKIQMRYNEEHGIVPQTIKK---E 596

Query: 732 VIDPILLEDAATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           + D I +  A  T ++ D     S++K + K  +K L+KQMH AA+ L+FE AA++RD +
Sbjct: 597 IRDLISISKATDTEVAEDTPDYSSMNKAERKDAIKKLQKQMHEAAEMLDFELAAQLRDMV 656

Query: 791 KRLKS 795
             LK+
Sbjct: 657 LELKA 661


>gi|58585030|ref|YP_198603.1| excinuclease ABC subunit B [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|75497603|sp|Q5GRL3|UVRB_WOLTR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|58419346|gb|AAW71361.1| Helicase subunit of the DNA excision repair complex, UvrB
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 645

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 468/655 (71%), Gaps = 13/655 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI  L+ G++  ++ Q+LLGVTGSGKTFTMA VI    RPA+++A
Sbjct: 3   FQLVTHFQPAGDQPQAIDSLVAGLNDNKRDQVLLGVTGSGKTFTMANVIARTNRPALIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFPHNAVEYF+SYYDYYQPEAY+P+TDTYIEK+S INE+ID +R+
Sbjct: 63  HNKTLAAQLYEEMKGFFPHNAVEYFISYYDYYQPEAYLPQTDTYIEKDSVINERIDMLRY 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  SLLER D IVV+SVSCIYG+GS ESY  M + L  GD +   + L+ L   QYKR 
Sbjct: 123 SAVCSLLERRDTIVVASVSCIYGLGSPESYLSMTITLSTGDRIRINDFLNDLANLQYKRS 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FR+ GD I+IFP++ ED AWR+ + GN+IE ISE   +TG  I+ ++ I I+
Sbjct: 183 DIRFERGYFRMRGDVIDIFPAYYEDKAWRLLLIGNEIEGISEINAITGNIIKCIDKITIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NS+++T R TL  A++ I+EEL  RL     + +++EAQRLEQR  +D+EM+  TG+C+
Sbjct: 243 PNSYHITSRETLLRAVQPIREELNERLDYYYSQNKIVEAQRLEQRTNFDIEMMVATGTCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL G   G+ PPTLFEY+PED +LFVDESHVT+PQI  MY G+  RK  L ++
Sbjct: 303 GIENYSRYLYGMEAGDAPPTLFEYLPEDVILFVDESHVTVPQIGAMYNGNESRKKKLIDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F+EW  +RP TI +SATPG +EL +   + VEQ+IRPTG+ DP   
Sbjct: 363 GFRLPSAFDNRPLKFKEWESMRPQTIYISATPGKYELARTNNLFVEQVIRPTGITDPICI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ A  QV DV  E  +  ++G  +L+T LTK+MAE L E++ E N++V Y+HS++  LE
Sbjct: 423 VKPAEAQVYDVVHEAQVTIKRGFCVLITTLTKKMAEKLAEHMSELNMKVSYLHSDISALE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI+I+  LR  + DVL+G+NLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RIDIVYKLRSKEIDVLIGVNLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  S+ ILYAD +T S+  A+ ET RRR+KQ +++  HN+ P+++ + I   +   ++  
Sbjct: 543 NAESRAILYADKVTGSMDRALKETERRRKKQKKYSVLHNVLPKTIIKPISNTLKEKVVVK 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T  ++ D              + SLRKQM   A NL FEEAA+I++ I R+ +
Sbjct: 603 VTTIGMNKDT-------------VSSLRKQMLAHAKNLEFEEAAKIKNIIGRINN 644


>gi|54308311|ref|YP_129331.1| excinuclease ABC subunit B [Photobacterium profundum SS9]
 gi|81828819|sp|Q6LT47|UVRB_PHOPR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|46912739|emb|CAG19529.1| Putative excinuclease ABC subunit B [Photobacterium profundum SS9]
          Length = 674

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/663 (53%), Positives = 475/663 (71%), Gaps = 9/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + P+GDQP AI QLL+G+ S    Q LLGVTGSGKTFT+A VI    RP  +MA
Sbjct: 5   FSLSSGFSPAGDQPTAINQLLEGLDSGLAHQTLLGVTGSGKTFTIANVIAESNRPTFIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+++SVS IYG+G  +SY +M++ ++ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERRDVIIIASVSAIYGLGDPDSYLKMMLHVRRGDMLNQRDILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I++FP+  E  A R+ +F +++E I+ F PLTG  + +++    I
Sbjct: 185 DVSFERGHFRVRGEVIDVFPAESEHDAIRIELFDDEVECINVFDPLTGAVLQKDLPRCTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK+EL +R  +L    +L+E QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPREKILEAIEKIKDELVVRRKQLMDSNKLVEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+ QI  MYRGD  RK  L E
Sbjct: 305 SGIENYSRYLSGREEGEPPPTLFDYLPADGLLIIDESHVTVSQIGAMYRGDRSRKENLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP++FEE+  L P TI VSATPG +E+EQ    I EQ++RPTGL+DP +
Sbjct: 365 YGFRLPSALDNRPMKFEEFASLAPQTIYVSATPGKYEIEQSGNDIAEQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI +   +G R+L+T LTKRM+EDL EYL E N++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIREVKGERVLVTTLTKRMSEDLAEYLAEHNVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  + ILY D IT S++ AI ET RRREKQ  HNKK+ I PQ + +K+ ++++     
Sbjct: 545 RNLEGRAILYGDKITGSMERAIFETNRRREKQALHNKKNGITPQGLNKKVGDILELGKPS 604

Query: 740 DAATTNISIDAQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
             + TN +    +++        LS ++ +  ++ L  +M+  A NL FE+AA  RD+I 
Sbjct: 605 SRSRTNKAAQLNRVAESKGTYVNLSPQQLELEIQRLETEMYDLAQNLEFEKAAEARDKIH 664

Query: 792 RLK 794
            L+
Sbjct: 665 TLR 667


>gi|9910887|sp|P56981|UVRB_BACCA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
          Length = 658

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/655 (56%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y P GDQP AIA+L+ G+    K Q LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 6   FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 66  HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY R 
Sbjct: 126 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ +   E + I+
Sbjct: 186 DIDF-RGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGKVLGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  +G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D L+ VDESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       I VSATPG +ELE   G+ VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPGV-VEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    ++  R L+T LTK+MAEDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTITKS+++AI ET RRR  Q E+N+KH I P++VK++I +VI       
Sbjct: 544 NANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYA-- 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A  T +       +++K++ +  +++L  +M  AA  L+FE AA++RD I  LK+
Sbjct: 602 AEETEMYEAKPAAAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKA 656


>gi|50513706|pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
           Mutant Y96a Revealing A Novel Fold For Domain 2
 gi|50513707|pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
           Mutant Y96a Revealing A Novel Fold For Domain 2
          Length = 658

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/655 (56%), Positives = 473/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y P GDQP AIA+L+ G+    K Q LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 5   FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFPHNAVEYFVSYYDY QPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYAQPEAYVPQTDTYIEKDAKINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ +   E + I+
Sbjct: 185 DIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  +G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D L+ VDESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       I VSATPG +ELE   G +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    ++  R L+T LTK+MAEDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTITKS+++AI ET RRR  Q E+N+KH I P++VK++I +VI       
Sbjct: 544 NANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYA-- 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A  T +       +++K++ +  +++L  +M  AA  L+FE AA++RD I  LK+
Sbjct: 602 AEETEMYEAKPAAAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKA 656


>gi|222153289|ref|YP_002562466.1| excinuclease ABC subunit B [Streptococcus uberis 0140J]
 gi|254764912|sp|B9DSH1|UVRB_STRU0 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|222114102|emb|CAR42542.1| UvrABC system protein B (UvrB protein) [Streptococcus uberis 0140J]
          Length = 663

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/663 (53%), Positives = 479/663 (72%), Gaps = 9/663 (1%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +D   F++ + Y PSGDQP AI QL+  I   EK Q+LLG TG+GKT+TM++VI  + +P
Sbjct: 5   RDENTFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R D    RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ +   E
Sbjct: 185 QFERNDFDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKILGEAE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL+QR  YD+EML  
Sbjct: 245 HLVLFPATHFVTNDEHMEASIAKIQAELASQLKVFESEGKLLEAQRLKQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKK 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +ELEQ    IVEQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYELEQTD-TIVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R    Q++D+  EINL  ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPIVEVRPTMGQMDDLLGEINLRTERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN   +VI+YAD +T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I  
Sbjct: 544 GRAARNSQGRVIMYADKMTESMQKAIDETARRRQIQMAYNEEHGIVPQTIKKEIRDLISI 603

Query: 736 ILLEDAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                   TN  ++ + L    ++K + +  +K L+KQMH AA+ L+FE AA+IRD +  
Sbjct: 604 -----TKGTNTEVEEESLDYSVMTKSERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLE 658

Query: 793 LKS 795
           LKS
Sbjct: 659 LKS 661


>gi|7766820|pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
           Complex With Atp
          Length = 657

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/655 (56%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y P GDQP AIA+L+ G+    K Q LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 5   FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ +   E + I+
Sbjct: 185 DIDF-RGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGKVLGEREHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  +G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 244 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D L+ VDESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 304 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       I VSATPG +ELE   G+ VEQIIRPTGL+DP ++
Sbjct: 364 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPGV-VEQIIRPTGLLDPTID 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    ++  R L+T LTK+MAEDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 423 VRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTITKS+++AI ET RRR  Q E+N+KH I P++VK++I +VI       
Sbjct: 543 NANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYA-- 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A  T +       +++K++ +  +++L  +M  AA  L+FE AA++RD I  LK+
Sbjct: 601 AEETEMYEAKPAAAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKA 655


>gi|238794062|ref|ZP_04637679.1| UvrABC system protein B [Yersinia intermedia ATCC 29909]
 gi|238726567|gb|EEQ18104.1| UvrABC system protein B [Yersinia intermedia ATCC 29909]
          Length = 680

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/660 (55%), Positives = 468/660 (70%), Gaps = 5/660 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +++ P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +V+
Sbjct: 14  LFKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVL 73

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR
Sbjct: 74  APNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 133

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R
Sbjct: 134 LSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSR 193

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ    V    +
Sbjct: 194 NDQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTV 253

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  AM+ IK EL  R   L    +LLE QR+ QR  +DLEM+   G C
Sbjct: 254 YPKTHYVTPRERILQAMEEIKVELADRRQVLLANNKLLEEQRISQRTQFDLEMMNELGYC 313

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL E
Sbjct: 314 SGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRSRKETLVE 373

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+  G I++Q++RPTGL+DP +
Sbjct: 374 YGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIDQVVRPTGLLDPLI 433

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+
Sbjct: 434 EVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLGEHGARVRYLHSDIDTV 493

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 494 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 553

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-----D 734
           RN+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +KI +++      
Sbjct: 554 RNLNGKAILYGDRITASMEKAIGETERRRVKQQTYNEERGIIPQGLNKKIGDILQLGQPS 613

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      ++      +L  K     ++ L  +M+  A NL FE+AA +RD++ +L+
Sbjct: 614 SRGKGKGRGGKVADPNNYHALPPKALDQKIRELESKMYTHAQNLEFEQAAELRDQVHQLR 673


>gi|46445808|ref|YP_007173.1| excinuclease ABC subunit B [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81627729|sp|Q6MEV1|UVRB_PARUW RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|46399449|emb|CAF22898.1| probable Helicase subunit B of the DNA excision repair complex
           (excinuclease ABC) [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 673

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/661 (55%), Positives = 471/661 (71%), Gaps = 10/661 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ+ T++ P GDQP AI QL+  I   ++ Q+LLG+TGSGKTFTMA VI  +QRP +++
Sbjct: 6   LFQLHTEFEPCGDQPEAINQLVASILQNKRSQVLLGITGSGKTFTMANVIAKVQRPTLIL 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK+ SIN++ID+MR
Sbjct: 66  AHNKTLAAQLYQEFKAFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKDMSINDKIDKMR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SATRSLLER+D I+VSSVSCIYG+GS E Y  M + L  G    + ++L  LV+ QYKR
Sbjct: 126 LSATRSLLERSDVIIVSSVSCIYGLGSPEYYRGMNLTLSQGQMRRRDDILLHLVEMQYKR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D   IR TFRV GD ++IFP++ ED+A RV MFG++IE+ISE  PLTG+  R + +I I
Sbjct: 186 NDFEFIRSTFRVRGDVLDIFPAYEEDLAIRVEMFGDEIEQISEIDPLTGKVKRRIASITI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y +SH+VTP      AM+ I+ EL  R    E E + LE +R++QR  YDLEML+  G+C
Sbjct: 246 YPSSHHVTPEEIRLKAMETIRAELDERRQFYETEKKYLELERIQQRTMYDLEMLKEVGTC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           + IENYSR+ + R PG PPP L +Y P D LL +DESH T+PQ+  M+ GD  RK TL +
Sbjct: 306 KGIENYSRHFSMRQPGAPPPCLLDYFPSDYLLVIDESHQTLPQVHAMFNGDRARKQTLVD 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS  DNRPLRFEE        + VSATPG+WE+++  G IVEQ+IRPTGL+DP +
Sbjct: 366 FGFRLPSAFDNRPLRFEEVYGRIHQVVYVSATPGAWEVQEAGGEIVEQLIRPTGLLDPII 425

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR A  QV+D   EI     +G R+LLT LTK+++E+LT YL + N++ +Y+HS++ T+
Sbjct: 426 EIRPASGQVDDCLAEIRSHVSKGGRVLLTTLTKKLSEELTTYLNDLNVKAKYLHSDIDTI 485

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++IIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQT GRAA
Sbjct: 486 ERVQIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTCGRAA 545

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI---ME----- 731
           RN   +VI+YAD ITKSI+  ++ T  RR  Q+ +N++H I P++VK +I   ME     
Sbjct: 546 RNAEGRVIMYADKITKSIKRTLEITESRRALQMRYNEQHGITPRTVKREISVLMESEEDQ 605

Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           V  P  LE+            L+L + + K  +K   K+M  AA    FEEAA  RD+++
Sbjct: 606 VTHPTKLEEEIFKAAEEAHHYLTLDEVRLK--IKECEKEMKKAAKEFRFEEAADWRDQMR 663

Query: 792 R 792
           R
Sbjct: 664 R 664


>gi|118497766|ref|YP_898816.1| excinuclease ABC subunit B [Francisella tularensis subsp. novicida
           U112]
 gi|194323738|ref|ZP_03057514.1| excinuclease ABC, B subunit [Francisella tularensis subsp. novicida
           FTE]
 gi|118423672|gb|ABK90062.1| excinuclease ABC, subunit B [Francisella novicida U112]
 gi|194322102|gb|EDX19584.1| excinuclease ABC, B subunit [Francisella tularensis subsp. novicida
           FTE]
          Length = 668

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/660 (54%), Positives = 479/660 (72%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T Y P+GDQP AI  L+ GI++  + Q+LLGVTGSGKT+TMA VI+  Q+P +++A
Sbjct: 4   FNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++MR 
Sbjct: 64  HNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY R 
Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +K++++    I+
Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRATIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            ++HYV  +      ++ IK+ELK R+   EKEG+LLEAQR+EQR  YD+EM++  G C 
Sbjct: 244 PSTHYVASKERKEIVIEEIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELGYCT 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RK+ L  Y
Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   V+Q+IRPTGL+DP V 
Sbjct: 364 GFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDPEVF 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QVED   EIN A  +  R+L+T LTK+MAE+LTEYL E  + VRY+HS++ T+E
Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERVLITTLTKKMAENLTEYLSEHGVNVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR AR
Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738
           N N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D  P + 
Sbjct: 543 NQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSPEMQ 602

Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + A   N+ +    + +S   G       +K+L K+M   A  L FE+A  IRD+I  +K
Sbjct: 603 KCAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKITEIK 662


>gi|194098909|ref|YP_002001974.1| excinuclease ABC subunit B [Neisseria gonorrhoeae NCCP11945]
 gi|239999193|ref|ZP_04719117.1| excinuclease ABC subunit B [Neisseria gonorrhoeae 35/02]
 gi|268595020|ref|ZP_06129187.1| UvrABC system protein B [Neisseria gonorrhoeae 35/02]
 gi|193934199|gb|ACF30023.1| UvrABC system protein B [Neisseria gonorrhoeae NCCP11945]
 gi|268548409|gb|EEZ43827.1| UvrABC system protein B [Neisseria gonorrhoeae 35/02]
          Length = 675

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/667 (53%), Positives = 481/667 (72%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDALRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ A+DET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +        +Q     K G+ H        +  L K M  AA +L FEEAA +RD I+ 
Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665

Query: 793 LKSSPYF 799
           +K +  F
Sbjct: 666 IKENLLF 672


>gi|304413710|ref|ZP_07395154.1| DNA damage recognition component and excinulease of nucleotide
           excision repair [Candidatus Regiella insecticola LSR1]
 gi|304283801|gb|EFL92195.1| DNA damage recognition component and excinulease of nucleotide
           excision repair [Candidatus Regiella insecticola LSR1]
          Length = 678

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/662 (55%), Positives = 473/662 (71%), Gaps = 10/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   + PSGDQP+AI QL +G+ +    Q LLGVTGSGKTFT+A VI  MQ+P +++A
Sbjct: 12  FQLHASFEPSGDQPSAIFQLKEGLENGLAHQTLLGVTGSGKTFTVANVIADMQKPTLILA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+INE I++MR 
Sbjct: 72  PNKTLAAQLYGEMKVFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAINEHIEQMRL 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +MI+ L  G  ++Q+E+L  L + QYKR 
Sbjct: 132 SATKALLERQDVIVVASVSAIYGLGDPDRYLKMILHLTNGMIIDQREILRCLAELQYKRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+     A RV +F N++E +S F PLTGQ ++ +    IY
Sbjct: 192 DQVFQRGTFRVRGEVIDIFPAESSKQAVRVELFDNEVERLSLFDPLTGQFLQQITRCTIY 251

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY TPR  +   ++ IK EL+ R   L    +LLE QRL QR  +D+EM+   G C 
Sbjct: 252 PKTHYATPRECILQMIEEIKVELQQRRTLLLANNKLLEEQRLTQRTQFDIEMINELGYCS 311

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G+PPPTLF+Y+P + LL VDESHVTIPQI  MY+GD  RK  L EY
Sbjct: 312 GIENYSRYLSGRAAGDPPPTLFDYLPANGLLIVDESHVTIPQIGAMYKGDSSRKENLVEY 371

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATP  +EL++  G ++EQ++RPTGL+DP +E
Sbjct: 372 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPNQYELDKSSGKVIEQLVRPTGLLDPVIE 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D+  EI        RIL+T LTKRMAEDLT+YL E+  RVRY+HS++ T+E
Sbjct: 432 VRPATIQVDDLLSEIRQRVLINERILVTTLTKRMAEDLTQYLQEQGERVRYLHSDIDTVE 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG FD+LVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 492 RIEIIRDLRLGHFDILVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +KI +++    P  
Sbjct: 552 NLNGKAILYGDKITSSMEKAIQETERRRAKQKAYNEEKGIIPQGLNKKIEDILQLGQPYS 611

Query: 738 LEDAATTNI-SIDA----QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                 + + +++A    Q L+    + K H   L  +M++ A NL FE+AA +RD++ R
Sbjct: 612 SGKEKKSGLKAMEAANHYQALTPQALEQKIH--ELEAKMYICAQNLEFEQAASLRDQVHR 669

Query: 793 LK 794
           ++
Sbjct: 670 MR 671


>gi|255065871|ref|ZP_05317726.1| excinuclease ABC subunit B [Neisseria sicca ATCC 29256]
 gi|255049782|gb|EET45246.1| excinuclease ABC subunit B [Neisseria sicca ATCC 29256]
          Length = 675

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/671 (53%), Positives = 482/671 (71%), Gaps = 21/671 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSLSKKK----GKAH--------LKSLRKQMHLAADNLNFEEAARIRD 788
                   D+ +  L  K     G+ H        +  L K M  AA +L FEEAA +RD
Sbjct: 610 --------DSGKGRLKSKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRD 661

Query: 789 EIKRLKSSPYF 799
            I+ +K +  F
Sbjct: 662 RIRGIKENLLF 672


>gi|225023471|ref|ZP_03712663.1| hypothetical protein EIKCOROL_00329 [Eikenella corrodens ATCC
           23834]
 gi|224943820|gb|EEG25029.1| hypothetical protein EIKCOROL_00329 [Eikenella corrodens ATCC
           23834]
          Length = 675

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/663 (53%), Positives = 479/663 (72%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVVRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPSNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSLS----KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                      ++ +S    ++     +  L K M  AA +L FEEAA +RD I+ +K +
Sbjct: 610 DGGKGRLKGKNKVKVSEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEN 669

Query: 797 PYF 799
             F
Sbjct: 670 LLF 672


>gi|188534388|ref|YP_001908185.1| excinuclease ABC subunit B [Erwinia tasmaniensis Et1/99]
 gi|238689682|sp|B2VBW9|UVRB_ERWT9 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|188029430|emb|CAO97307.1| UvrABC system protein B (Excinuclease ABC subunit B) [Erwinia
           tasmaniensis Et1/99]
          Length = 674

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/663 (55%), Positives = 474/663 (71%), Gaps = 9/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLNSEFKPAGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLSRGMVIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A RV +F  ++E +S F PLTGQ    +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSIFDPLTGQIESVIPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKDELVERKKVLLDNNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGE PPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+  G +++Q++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPMKFEEFEGLAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPIVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI        R+L+TVLTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVGTQVDDLLSEIRQRVAINERVLVTVLTKRMAEDLTEYLTEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N+N K ILY D IT S+  AI ET RRREKQ  HN++H I PQ + +KI ++++    + 
Sbjct: 545 NLNGKAILYGDKITPSMARAIGETERRREKQQLHNEEHGIVPQGLNKKISDILELGQGLA 604

Query: 738 LEDAATTN------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
              A   N      +  D   + L+ +  +  +  L  QM   A NL FEEAA++RD++ 
Sbjct: 605 KNKAKPRNMKGRSIVEDDPAHVDLTPQGLQKRIHQLEAQMQQHAQNLEFEEAAQVRDQLH 664

Query: 792 RLK 794
           +++
Sbjct: 665 QVR 667


>gi|88859835|ref|ZP_01134474.1| ATP-dependent DNA excision repair enzyme UvrAC [Pseudoalteromonas
           tunicata D2]
 gi|88817829|gb|EAR27645.1| ATP-dependent DNA excision repair enzyme UvrAC [Pseudoalteromonas
           tunicata D2]
          Length = 664

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/659 (54%), Positives = 472/659 (71%), Gaps = 6/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+D+ PSGDQP AI QL +G+ +    Q LLG TG+GKTFTMA +I  + RP I+MA
Sbjct: 5   FRLQSDFQPSGDQPTAIKQLCEGLDAGLAHQTLLGATGTGKTFTMANIIHNLNRPTIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP N VEYFVSYYDYYQPEAYV  +DT+IEK++SINE I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPDNCVEYFVSYYDYYQPEAYVVASDTFIEKDASINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  +SY +M++ LK+G+ V+Q+++L  L + QY R 
Sbjct: 125 SATKALLERRDVIIVASVSAIYGLGDPDSYMKMMLLLKVGEKVDQRDMLRRLSELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   R T+RV G+ ++IFP+  E  A RV MF ++IE +S F PLTG   +++    IY
Sbjct: 185 DIDFQRATYRVRGEVVDIFPAESETYAIRVEMFDDEIERLSIFDPLTGAVEKHIVRATIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR T+  A + IK ELK     L K  +L+E QR+ QR  YD+EM+   G C 
Sbjct: 245 PKSHYVTPRETILKATEEIKAELKQHREFLLKHNKLVEEQRVAQRTQYDIEMMVELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSRYL+GR PGEPPPTL +Y+P+DSL+ +DESHVT+ QI  MY+GD  RK  L EY
Sbjct: 305 GVENYSRYLSGRAPGEPPPTLLDYLPDDSLMIIDESHVTVSQIGAMYKGDRSRKENLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS MDNRPL+F+E+  + P TI VSATPG +E+ +  G + EQ+IRPTGL+DP +E
Sbjct: 365 GFRMPSAMDNRPLKFDEFEAIAPQTIYVSATPGEYEITRSCGEVAEQVIRPTGLLDPEIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI    +   R+L+T LTKRM+EDLT+YL +  ++VRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIYKRVELKERVLVTTLTKRMSEDLTDYLADHGVKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RIEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           +++ + ILY D ITKS+  AI+ET RRRE Q  +N KH   P ++++K+ +++D    + 
Sbjct: 545 HLSGRAILYGDKITKSMAAAIEETERRREIQHAYNIKHGKVPMALQKKVTDIMDVGTTVT 604

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            E     N   DA    LS  +    +K L  +M   A  L FE+AA++RD+I+ L+ S
Sbjct: 605 SEQMTAVN---DASYAVLSAGQIAEKIKKLESKMMQHARELEFEKAAQVRDQIQHLQHS 660


>gi|169826762|ref|YP_001696920.1| excinuclease ABC subunit B [Lysinibacillus sphaericus C3-41]
 gi|168991250|gb|ACA38790.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
           [Lysinibacillus sphaericus C3-41]
          Length = 659

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/654 (54%), Positives = 475/654 (72%), Gaps = 1/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q  Y P+GDQP AIA+L++G+ + ++ Q LLG TG+GKTFT++ VI+ +++P ++MA
Sbjct: 4   FDLQAPYQPNGDQPQAIAELVEGVKAGKRHQTLLGATGTGKTFTISNVIQQVKKPTLIMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++ID++RH
Sbjct: 64  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+GS E Y +M+V ++ G  +E+ +LL  LV  QY+R 
Sbjct: 124 SATSALFERDDVIIIASVSCIYGLGSPEEYREMVVSIRTGMEIERNQLLRKLVDVQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ + + E + I+
Sbjct: 184 DVSFTRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEILSDREHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL  L  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 244 PASHFVTREEKMRKAIENIEKELEDRLALLRAEDKLLEAQRLEQRTRYDLEMMREMGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED LL VDESHVT+PQ+ GMY GD  RK  L E+
Sbjct: 304 GIENYSRHLTLREAGATPYTLLDYFPEDFLLVVDESHVTLPQVRGMYNGDQARKGVLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       I VSATPG +ELE    +I +QIIRPTGL+DP ++
Sbjct: 364 GFRLPSALDNRPLRFEEYEARVHQAIYVSATPGPYELEHTPEMI-QQIIRPTGLLDPLID 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++++ DEI     +  R+L+T LTK+M+EDLT YL E  ++V Y+HSE+KTLE
Sbjct: 423 VRPIEGQIDNLIDEIQDRIARDERVLVTTLTKKMSEDLTAYLKEMGLKVEYLHSEIKTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIR+LR G +DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RIEIIRELRKGTYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YAD +T S++ A+DET RRR  Q+ +N++H I PQ++ +KI EVI    + +
Sbjct: 543 NANGHVIMYADHVTDSMKKALDETKRRRALQMAYNEEHGITPQTISKKIPEVIRATQVAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              + ++   +   L+K + +  L SL  +M  AA  L+FE AA +RD I  LK
Sbjct: 603 EEESYVTKATKGKKLTKAEREQLLASLEIEMKEAAKALDFERAAELRDTIFELK 656


>gi|254995406|ref|ZP_05277596.1| excinuclease ABC subunit B [Anaplasma marginale str. Mississippi]
          Length = 651

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/657 (53%), Positives = 481/657 (73%), Gaps = 12/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++++PSGDQP AI  L++GI    K Q LLGVTGSGKTFTMA VIE  QRPAI++A
Sbjct: 4   FKISSEFNPSGDQPGAIDSLVRGISCGAKEQTLLGVTGSGKTFTMASVIEQTQRPAIIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+ E ++FFP NAVEYFVSYYDYYQPEAY+P++D YIEK++ IN++ID +RH
Sbjct: 64  HNKTLAAQLHEEMRSFFPENAVEYFVSYYDYYQPEAYIPQSDVYIEKDALINDKIDLLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D +VV+SVSCIYG+GS E YS+M V + +G  ++  +L   LV+ QYK  
Sbjct: 124 SATRSLLERRDVVVVASVSCIYGLGSPELYSEMTVPIALGMKLDMCQLQERLVELQYKHG 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RG+F V GD + +FPSH ED  W++S FG++++ I E  P +G     +E IKI+
Sbjct: 184 N-RYERGSFNVQGDVLSVFPSHYEDRIWKISFFGDEVDSIQEVDPKSGMVTLKLEKIKIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHYVTPRPTL  A+  I++EL    ++ ++  +++EA R+ +R  +D+EM+  TG+C+
Sbjct: 243 PNSHYVTPRPTLLQAISEIEKELDECALQFKQCNKIVEADRIVERTRFDIEMMRETGTCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL G+  G+PP TL +Y+P+D+++F+DESH+T+PQI  MY GD  RKA L  +
Sbjct: 303 GIENYSRYLCGKEAGDPPNTLLDYLPQDAIMFIDESHMTVPQIRAMYNGDRMRKANLINH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS +DNRPL F EW   +PT + VSATPG +EL+Q  G+  EQ+IRPTGL+DP   
Sbjct: 363 GFRMPSALDNRPLTFAEWEDRKPTVVYVSATPGQYELQQTGGVATEQLIRPTGLLDPVCI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ A  Q+ DV  E      +G R+L+T LTK+MAE+LTEY+ E  I+V Y+HS+VKTLE
Sbjct: 423 VKGADGQIHDVMCESQATIARGYRVLITTLTKKMAENLTEYMREMGIKVAYLHSDVKTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII DLRLG  DVLVG+NL+REGLDIPEC LV ILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 483 RIEIISDLRLGVIDVLVGVNLMREGLDIPECALVGILDADKEGFLRSTTSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +VILYA+ ITKS++ A++ET RRR+ Q ++N++H+I P+++++ +         + 
Sbjct: 543 NVEGRVILYANVITKSMRTAMEETDRRRDIQRKYNQEHSIVPRTIQKPV---------QT 593

Query: 741 AATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + +  +    +++S       A+  +  L+K+M L A+NL+FE A  IR+EIKRL +
Sbjct: 594 SLSERVGSSRKKVSRDTNTDPANRDIVELQKEMLLCAENLDFERAVEIRNEIKRLTA 650


>gi|222475602|ref|YP_002564019.1| excinuclease ABC subunit B (uvrB) [Anaplasma marginale str.
           Florida]
 gi|255004725|ref|ZP_05279526.1| excinuclease ABC subunit B [Anaplasma marginale str. Virginia]
 gi|254764898|sp|B9KH59|UVRB_ANAMF RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|222419740|gb|ACM49763.1| excinuclease ABC subunit B (uvrB) [Anaplasma marginale str.
           Florida]
          Length = 651

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/657 (53%), Positives = 481/657 (73%), Gaps = 12/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++++PSGDQP AI  L++GI    K Q LLGVTGSGKTFTMA VIE  QRPAI++A
Sbjct: 4   FKISSEFNPSGDQPGAIDSLVRGISCGAKEQTLLGVTGSGKTFTMASVIEQTQRPAIIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+ E ++FFP NAVEYFVSYYDYYQPEAY+P++D YIEK++ IN++ID +RH
Sbjct: 64  HNKTLAAQLHEEMRSFFPENAVEYFVSYYDYYQPEAYIPQSDVYIEKDALINDKIDLLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D +VV+SVSCIYG+GS E YS+M V + +G  ++  +L   LV+ QYK  
Sbjct: 124 SATRSLLERRDVVVVASVSCIYGLGSPELYSEMTVPIALGMKLDMCQLQERLVELQYKHG 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RG+F V GD + +FPSH ED  W++S FG++++ I E  P +G     +E IKI+
Sbjct: 184 N-RYERGSFSVQGDVLSVFPSHYEDRIWKISFFGDEVDSIQEVDPKSGMVTLKLEKIKIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHYVTPRPTL  A+  I++EL    ++ ++  +++EA R+ +R  +D+EM+  TG+C+
Sbjct: 243 PNSHYVTPRPTLLQAISEIEKELDECALQFKQCNKIVEADRIVERTRFDIEMMRETGTCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL G+  G+PP TL +Y+P+D+++F+DESH+T+PQI  MY GD  RKA L  +
Sbjct: 303 GIENYSRYLCGKEAGDPPNTLLDYLPQDAIMFIDESHMTVPQIRAMYNGDRMRKANLINH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS +DNRPL F EW   +PT + VSATPG +EL+Q  G+  EQ+IRPTGL+DP   
Sbjct: 363 GFRMPSALDNRPLTFAEWEDRKPTVVYVSATPGQYELQQTGGVATEQLIRPTGLLDPVCI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ A  Q+ DV  E      +G R+L+T LTK+MAE+LTEY+ E  I+V Y+HS+VKTLE
Sbjct: 423 VKGADGQIHDVMCESQATIARGYRVLITTLTKKMAENLTEYMREMGIKVAYLHSDVKTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII DLRLG  DVLVG+NL+REGLDIPEC LV ILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 483 RIEIISDLRLGVIDVLVGVNLMREGLDIPECALVGILDADKEGFLRSTTSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +VILYA+ ITKS++ A++ET RRR+ Q ++N++H+I P+++++ +         + 
Sbjct: 543 NVEGRVILYANVITKSMRTAMEETDRRRDIQRKYNQEHSIVPRTIQKPV---------QT 593

Query: 741 AATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + +  +    +++S       A+  +  L+K+M L A+NL+FE A  IR+EIKRL +
Sbjct: 594 SLSERVGSSRKKVSRDTNTDPANRDIVELQKEMLLCAENLDFERAVEIRNEIKRLTA 650


>gi|188590418|ref|YP_001922476.1| excinuclease ABC subunit B [Clostridium botulinum E3 str. Alaska
           E43]
 gi|238689646|sp|B2UZZ0|UVRB_CLOBA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|188500699|gb|ACD53835.1| excinuclease ABC, B subunit [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 657

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/655 (54%), Positives = 475/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI  +LK I    + Q LLGVTGSGKTFTMA +IE +QRP +++A
Sbjct: 4   FKIHSKFKPTGDQPKAIETILKSIKKGNEFQTLLGVTGSGKTFTMANIIEKLQRPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFKEFFPENIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G+ + Y ++ + L+ G   E+ E++  L++ QY+R 
Sbjct: 124 SATSALFERRDVIIVASVSCIYGLGNPDEYKKLTISLRKGMQKERDEIIKKLIEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD ++I PS       R+  FG++I+ I EF  LTG  +     + I+
Sbjct: 184 DIDFSRGTFRVRGDLLDIIPSSTSSKGIRIEFFGDEIDRIREFDVLTGTILGERNHVLIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T + T+  ++  I+ EL+ RL EL  + +LLEAQRL QR  +D+EM+   G C 
Sbjct: 244 PASHFATSKETVERSLGEIENELENRLRELNSQEKLLEAQRLRQRTNFDIEMIREMGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR PG PP TL +Y PED LLF+DESHVT+PQ+  MY GD  RK TL +Y
Sbjct: 304 GIENYSRILDGRAPGTPPKTLIDYFPEDFLLFIDESHVTLPQVRAMYAGDRSRKNTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+FEE+       + VSATP  +ELE  Q  I EQ+IRPTGL+DP + 
Sbjct: 364 GFRLPCAYDNRPLKFEEFEKKINQVMFVSATPAQYELEHSQS-IAEQVIRPTGLLDPEII 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+  + Q++D+Y EI     +G RIL+T LTKRMAEDLT+Y+ E  ++  YMHS++ T+E
Sbjct: 423 IKPVKGQIDDLYTEIQETISRGYRILITTLTKRMAEDLTKYMIELGVKATYMHSDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLG++DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMKIIRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+YAD ITKS++ AI ET RRR+ Q E+N++H I PQ++ +++ ++I+   + +
Sbjct: 543 NSESKVIMYADNITKSMKKAISETERRRKIQTEYNEEHGIIPQTINKEVRDLIEATKVAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            + T   I+A + SL+KK+ K  +K   ++M LAA NL FE AA++RDEI+ LK 
Sbjct: 603 ES-TEYGIEATK-SLTKKEVKKLIKEYTEEMMLAAKNLQFERAAQLRDEIEELKG 655


>gi|254374576|ref|ZP_04990057.1| DNA excision repair enzyme [Francisella novicida GA99-3548]
 gi|151572295|gb|EDN37949.1| DNA excision repair enzyme [Francisella novicida GA99-3548]
          Length = 668

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/660 (54%), Positives = 478/660 (72%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T Y P+GDQP AI  L+ GI +  + Q+LLGVTGSGKT+TMA VI+  Q+P +++A
Sbjct: 4   FNLVTKYAPAGDQPQAIQSLVDGIDTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++MR 
Sbjct: 64  HNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY R 
Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +KI+++    I+
Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKIKSLHRATIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            ++HYV  +      ++ IK+ELK R+   EKEG+LLEAQR+EQR  YD+EM++  G C 
Sbjct: 244 PSTHYVASKERKEIVIEEIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELGYCT 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RK+ L  Y
Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   V+Q+IRPTGL+DP V 
Sbjct: 364 GFRLPSALDNRPLKFNEFEKLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDPEVF 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QVED   EIN A  +  R+L+T LTK+MAE+LTEYL E  + VRY+HS++ T+E
Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERVLITTLTKKMAENLTEYLSEHGVNVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR AR
Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738
           N N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D  P + 
Sbjct: 543 NQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSPEMQ 602

Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + A   N+ +    + +S   G       +K+L K+M   A  L FE+A  IRD+I  +K
Sbjct: 603 KRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKITEIK 662


>gi|298368934|ref|ZP_06980252.1| excinuclease ABC subunit B [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282937|gb|EFI24424.1| excinuclease ABC subunit B [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 675

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/663 (53%), Positives = 479/663 (72%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                      ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K  
Sbjct: 610 DGGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEG 669

Query: 797 PYF 799
             F
Sbjct: 670 LLF 672


>gi|146329703|ref|YP_001209468.1| excinuclease ABC subunit B [Dichelobacter nodosus VCS1703A]
 gi|146233173|gb|ABQ14151.1| excinuclease ABC, B subunit [Dichelobacter nodosus VCS1703A]
          Length = 669

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/656 (54%), Positives = 465/656 (70%), Gaps = 1/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+  DY P+GDQ  AI QLL G+ +    Q LLGVTGSGKTFTMA VI    RP +++A
Sbjct: 6   FQLVADYAPAGDQAPAIEQLLSGLDAGLAKQTLLGVTGSGKTFTMANVIARANRPTLILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E + FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 66  PNKTLAAQLYGEMRAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D ++V+SVS IYG+G    Y +M++ +  G  ++Q+ LLS L + QY R 
Sbjct: 126 SATKAILERRDTVIVASVSAIYGLGDPREYLKMLLHVTRGSQIDQRSLLSHLAELQYTRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  ++RGTFRV GD I+I P+   + A R+++F +++E I  F PLTG  I +V  + IY
Sbjct: 186 DTQLLRGTFRVRGDVIDIMPAEAVEHAVRIALFDDEVERIQYFDPLTGAVIADVPRVSIY 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R  L  A+  IK EL  R  +L  + +LLEAQRL QR  +DLEM+   G C 
Sbjct: 246 PKTHYATTRDRLLAAIDEIKAELHERCAQLRAQNKLLEAQRLAQRTQFDLEMIMELGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTL +Y+P D+LL +DESHVT+PQ+ GMYRGD  RK TL  +
Sbjct: 306 GIENYSRYLSGRAAGEPPPTLHDYLPADALLLIDESHVTLPQLHGMYRGDRSRKETLVAH 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  + P TI +SATP  +E EQ  G IVEQ++RPTGL+DP VE
Sbjct: 366 GFRLPSALDNRPLRFEEFEAISPQTIYISATPSDYEREQS-GQIVEQLVRPTGLLDPRVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+DV  EI     +  R+L+T LTK+M+EDLT++L E+ I VRYMHS++ T+E
Sbjct: 425 VRPVAQQVDDVLAEIQRRRAKNERVLITTLTKKMSEDLTDFLQEQGIAVRYMHSDIHTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG  DVLVGINLLREGLDIPE  LVAI DADKEGFLR + +LIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGVIDVLVGINLLREGLDIPEVSLVAIFDADKEGFLRGERALIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V+   ILYAD +T+S++ A+ ET RRREKQ   N++H I PQ++++KI ++++      
Sbjct: 545 HVDGMAILYADHVTQSMEKALTETQRRREKQTAFNEQHGIVPQTIQKKITDIMEGAHRVS 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +   +  S   K     ++ L K M  AA +L FE AA IRD IK L+ +
Sbjct: 605 EKKTTRTPSEETFSSDPKVIIKEIEQLEKAMLAAARDLEFERAAEIRDRIKTLEKA 660


>gi|258510424|ref|YP_003183858.1| excinuclease ABC, B subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477150|gb|ACV57469.1| excinuclease ABC, B subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 663

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/653 (55%), Positives = 475/653 (72%), Gaps = 1/653 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ TD  P GDQP AI  L+ G++S  + Q LLGVTGSGKTFTMA +I  + RP +V+A
Sbjct: 8   FELVTDMKPQGDQPQAIEALVDGVYSGLRHQTLLGVTGSGKTFTMANIIAEVNRPTLVIA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF+ FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK++ IN++ID++RH
Sbjct: 68  HNKTLAAQLAAEFRAFFPNNAVEYFVSYYDYYQPEAYIPSTDTYIEKDAKINDEIDKLRH 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT ++LERND +VV+SVS IYG+G+ E Y   ++ L++G  +++ ++L  LV  QY R 
Sbjct: 128 SATAAILERNDVLVVASVSAIYGLGNPEEYRHHVLSLRVGAVMDRNQMLRKLVDMQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++ A RV +FG++I+ ISE   LTG+ +       ++
Sbjct: 188 DINFTRGTFRVRGDVVEIFPASRDENAIRVELFGDEIDRISEINVLTGEVVARRSHFSVF 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT R  L  A++ I+ EL+ RL EL  +G+LLEAQRLEQR  YD+EM+   G C 
Sbjct: 248 PASHYVTSRERLERAIERIRAELEERLAELRAQGKLLEAQRLEQRTHYDIEMMLEMGFCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  GEPP TL +Y P   L F+DESHVTIPQ+ GMY GD  RK TL E+
Sbjct: 308 GIENYSRHLEGREAGEPPYTLLDYFPPGFLTFIDESHVTIPQLRGMYNGDRSRKLTLIEH 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+       I VSATPG +E +Q Q  IVEQIIRPTGLVDP + 
Sbjct: 368 GFRLPSAADNRPLKFEEFERAVGQCIYVSATPGPYE-QQHQQRIVEQIIRPTGLVDPEIH 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  I+VRY+HS++KT+E
Sbjct: 427 VRPVKGQIDDLVGEIRERIRRDERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSDIKTIE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ I+RDLR G FDVLVGINLLREGLD+PE  LVAILD DKEGFLRS TSLIQTIGRAAR
Sbjct: 487 RMVILRDLRRGVFDVLVGINLLREGLDLPEVSLVAILDTDKEGFLRSHTSLIQTIGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTIT+S+++AI+ET RRR+KQ+ +N++H I PQ+V++ + +VI+   + +
Sbjct: 547 NANGTVIMYADTITESMRIAIEETERRRQKQIAYNREHGITPQTVRKAVRDVIESTKVAE 606

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +    +++  +   LS ++ K  +  L ++M  AA  L FE AA +RD I  L
Sbjct: 607 SEEDYVAVAEKAQKLSGRERKELIAKLEQEMKAAAKALKFERAAELRDMIMEL 659


>gi|292487696|ref|YP_003530569.1| excinuclease UvrABC subunit B [Erwinia amylovora CFBP1430]
 gi|292898934|ref|YP_003538303.1| excision nuclease ABC subunit B [Erwinia amylovora ATCC 49946]
 gi|291198782|emb|CBJ45891.1| excision nuclease ABC subunit B [Erwinia amylovora ATCC 49946]
 gi|291553116|emb|CBA20161.1| Excinuclease UvrABC subunit B [Erwinia amylovora CFBP1430]
 gi|312171808|emb|CBX80065.1| Excinuclease UvrABC subunit B [Erwinia amylovora ATCC BAA-2158]
          Length = 674

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/672 (55%), Positives = 475/672 (70%), Gaps = 27/672 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLNSEFKPAGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTRGMVIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A RV +F  ++E +S F PLTGQ    +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSIFDPLTGQIESVIPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  L  AM+ IKEEL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERLLQAMEEIKEELVERKKVLLDNNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+ R PGE PPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSARGPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+  G +++Q++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPIVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI        R+L+TVLTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVGTQVDDLLSEIRQRVAINERVLVTVLTKRMAEDLTEYLTEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           N+N K ILY D IT S+  AI ET RRREKQ  HN++H I PQ + +KI ++++      
Sbjct: 545 NLNGKAILYGDKITPSMARAIGETERRREKQQLHNQEHGIVPQGLNKKISDILELGQGLA 604

Query: 735 ------------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                        I+ +D A  ++S     L L K+     +  L  QM   A NL FEE
Sbjct: 605 KNKAKPRNMKGRSIVEDDPAFVDLS----PLGLQKR-----IHQLEAQMQQHAQNLEFEE 655

Query: 783 AARIRDEIKRLK 794
           AA++RD++ +++
Sbjct: 656 AAQVRDQLHQVR 667


>gi|239815131|ref|YP_002944041.1| excinuclease ABC subunit B [Variovorax paradoxus S110]
 gi|239801708|gb|ACS18775.1| excinuclease ABC, B subunit [Variovorax paradoxus S110]
          Length = 705

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/661 (54%), Positives = 479/661 (72%), Gaps = 4/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQP AI  L++G+   E  Q LLGVTGSGKTFTMA VI  + RPAIV A
Sbjct: 33  FELFQPYPPAGDQPKAIDGLVEGVLDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIVFA 92

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I++MR 
Sbjct: 93  PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQMRL 152

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S+LER D ++V++VS IYGIG+ E Y+QM   +++GD + Q++++  L++ QY R 
Sbjct: 153 SATKSVLERRDTVIVATVSAIYGIGTPEDYTQMRFIMRVGDQIGQRDVIGRLIRMQYTRN 212

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RGTFRV GD+I++FP+   ++A R+ +F ++IE +  F PLTG+  + +    +Y
Sbjct: 213 EQDFSRGTFRVRGDTIDVFPAEHSELAIRIELFDDEIETLQLFDPLTGRIRQKIPRFTVY 272

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR  + +A++ IK EL  RL E   +G+L+EAQRLEQR  +DLEML   G C+
Sbjct: 273 PSSHYVTPRDKVLSAVETIKIELAERLKEFVSQGKLVEAQRLEQRTRFDLEMLAEIGHCK 332

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L+G  PGEPP TL +Y+P+D+L+F+DESH  + Q+S MY GD  RK TL EY
Sbjct: 333 GIENYTRHLSGAAPGEPPATLTDYLPKDALMFLDESHQMVGQLSAMYNGDRARKTTLVEY 392

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       I VSATP  +E +   G +VEQ++RPTGL+DP VE
Sbjct: 393 GFRLPSALDNRPLKLEEFETRMRQCIFVSATPAQYEKDHA-GNVVEQLVRPTGLIDPEVE 451

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DV  EI +   +  R+L+T LTKRMAE LT+YL +  ++VRY+HS+V T+E
Sbjct: 452 VRPATHQVDDVLGEIRIRVDKNERVLITTLTKRMAEQLTDYLGDNGVKVRYLHSDVDTVE 511

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 512 RVEILRDLRLGSFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 571

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD +T S++ AI ET RRR +Q+ +N+ + I P+S+ +++ ++ID +  E 
Sbjct: 572 NLNGKAILYADRMTDSMKKAIGETERRRARQIAYNEANGITPRSIVKQVRDLIDGVYSEK 631

Query: 741 AATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                  +D   A+   +S+K     +K L K M   A NL FE+AAR+RD++  L+   
Sbjct: 632 TGKEMAKLDLERAKVEDMSEKDIAREIKRLEKLMMEHARNLEFEKAARVRDQLALLREQA 691

Query: 798 Y 798
           +
Sbjct: 692 F 692


>gi|241668748|ref|ZP_04756326.1| excinuclease ABC subunit B [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877279|ref|ZP_05249989.1| excinuclease ABC subunit B [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843300|gb|EET21714.1| excinuclease ABC subunit B [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 668

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/660 (54%), Positives = 477/660 (72%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T Y P+GDQP AI  L++GI++  + Q+LLGVTGSGKT+TMA VI+  Q+P +++A
Sbjct: 4   FNLVTKYAPAGDQPNAIKSLVEGINNGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLIVA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++MR 
Sbjct: 64  HNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY R 
Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +K + +    I+
Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIETISVIDSLTSKKTKTLHRATIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            ++HYV  +   +  ++ IK ELK R+   E+EG+LLEAQR+EQR  YD+EM++  G C 
Sbjct: 244 PSTHYVASKERKDIVIEEIKAELKERVKYFEEEGKLLEAQRIEQRTKYDIEMIQELGYCT 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RK+ L  Y
Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   VEQ+IRPTGL+DP V 
Sbjct: 364 GFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVEQVIRPTGLLDPEVF 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QVED   EIN A  +  RIL+T LTK+MAE+LTEYL E  + VRY+HS++ T+E
Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERILITTLTKKMAENLTEYLSEHGVNVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR AR
Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738
           N N + ILYAD +TKS++ A+DET RRR+ Q EHNKK+NI P+++ + I +++D  P + 
Sbjct: 543 NQNGRAILYADVVTKSMKKAMDETLRRRQLQDEHNKKNNITPKTIIKSIDDMLDSSPEMQ 602

Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + A   N  +    + +S   G       +K+L K+M   A  L FE+A  IRD+I  +K
Sbjct: 603 KRAYKNNSRLKVDDVDVSAILGMTEASKVIKALEKRMRAYAKELEFEQATAIRDKITEIK 662


>gi|251780462|ref|ZP_04823382.1| excinuclease ABC, B subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243084777|gb|EES50667.1| excinuclease ABC, B subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 657

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/655 (54%), Positives = 474/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI  +LK I    + Q LLGVTGSGKTFTMA +IE +QRP +++A
Sbjct: 4   FKIHSKFKPTGDQPKAIETILKSIKKGNEFQTLLGVTGSGKTFTMANIIEKLQRPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFKEFFPENIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G+ + Y ++ + L+ G   E+ E++  L++ QY+R 
Sbjct: 124 SATSALFERRDVIIVASVSCIYGLGNPDEYKKLTISLRKGMQKERDEIIKKLIEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD ++I PS       R+  FG++I+ I EF  LTG  +     + I+
Sbjct: 184 DIDFSRGTFRVRGDLLDIIPSSTSSKGIRIEFFGDEIDRIREFDVLTGTILGERNHVSIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T + T+  ++  I+ EL+ RL EL  + +LLEAQRL QR  +D+EM+   G C 
Sbjct: 244 PASHFATSKETVERSLGEIENELENRLRELNSQEKLLEAQRLRQRTNFDIEMIREMGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR PG PP TL +Y PED LLF+DESHVT+PQ+  MY GD  RK TL +Y
Sbjct: 304 GIENYSRILDGRAPGTPPKTLIDYFPEDFLLFIDESHVTLPQVRAMYAGDRSRKNTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+FEE+       + VSATP  +ELE  Q  I EQ+IRPTGL+DP + 
Sbjct: 364 GFRLPCAYDNRPLKFEEFEKKINQVMFVSATPAQYELEHSQS-IAEQVIRPTGLLDPEII 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+  + Q++D+Y EI     +G RIL+T LTKRMAEDLT+Y+ E  ++  YMHS++ T+E
Sbjct: 423 IKPVKGQIDDLYTEIQETISRGYRILITTLTKRMAEDLTKYMSELGVKATYMHSDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLG++DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMKIIRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+YAD ITKS++ AI ET RRR+ Q E+N++H I PQ++ +++ ++I+   + +
Sbjct: 543 NSESKVIMYADNITKSMKKAISETERRRKIQTEYNEEHGIIPQTINKEVRDLIEATKVAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            + T   I+  + SL+KK+ K  +K   ++M LAA NL FE AA++RDEI+ LK 
Sbjct: 603 ES-TEYGIETTK-SLTKKEVKKLIKEYTEEMMLAAKNLQFERAAQLRDEIEELKG 655


>gi|317497023|ref|ZP_07955351.1| excinuclease ABC [Lachnospiraceae bacterium 5_1_63FAA]
 gi|291558945|emb|CBL37745.1| excinuclease ABC, B subunit [butyrate-producing bacterium SSC/2]
 gi|316895683|gb|EFV17837.1| excinuclease ABC [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 662

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/664 (54%), Positives = 482/664 (72%), Gaps = 5/664 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L KG     + + LLGVTGSGKTFTMA +I+ + +P +++A
Sbjct: 4   FELVSEYEPTGDQPQAIEKLTKGFQDGNQFETLLGVTGSGKTFTMANIIQNLNKPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+SS+N++ID++RH
Sbjct: 64  HNKTLAAQLYSEFKAFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSVNDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L+ER D IVVSSVSCIYGIGS ESYS+M++ L+ G   ++ E++  L+  QY R 
Sbjct: 124 SATAALIERKDVIVVSSVSCIYGIGSKESYSEMMISLRPGMIKDRDEVIDDLINIQYVRS 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGTFRV GD +EI P    + A RV  FG++I+ I EF  LTG+  R++  + I+
Sbjct: 184 ELDFKRGTFRVKGDVLEILPVSTFEDAVRVEFFGDEIDRIVEFDVLTGEVKRSLNFVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +  A+K IKEEL  ++   ++  +L+EAQR+ +R  +D+EML  TG C 
Sbjct: 244 PASHYVVPQEQIERAIKGIKEELAEQVTYFKEHDQLIEAQRIAERTNFDIEMLRETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L G  PG+PP TL ++  +D L+ +DESH+T+PQI GMY GD  RK+TL ++
Sbjct: 304 GIENYSRHLAGLEPGQPPSTLIDFFGDDFLMIIDESHITVPQIGGMYAGDQSRKSTLVDF 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F E+       + VSATPG +E E+ + +  EQIIRPTGL+DP ++
Sbjct: 364 GFRLPSAKDNRPLEFGEFEQKIDQMLFVSATPGKYE-EEHELLRAEQIIRPTGLLDPAID 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+    +G ++L+T LTKRMAE+LT+Y+ E  IRV+Y+HS++ TLE
Sbjct: 423 VRPVEGQIDDLLGEIHKETDKGNKVLVTTLTKRMAEELTDYMREVGIRVKYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLR+G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSL+QTIGRAAR
Sbjct: 483 RIEIVRDLRMGVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLVQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S+  AI ET RRRE Q E+NK+H I PQ++K+ I ++I      +
Sbjct: 543 NSEGHVIMYADHMTDSMHAAITETERRREIQDEYNKEHGITPQTIKKDIRDLIKISDEHE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
             T     D +  S+SKK+ K  ++ L K+M+ AA  LNFE AA++RDE+K  K +  +Q
Sbjct: 603 EETGGYEKDME--SMSKKELKEVIERLSKKMNQAAAELNFELAAQLRDELKEFKIA--YQ 658

Query: 801 GLDD 804
             DD
Sbjct: 659 EYDD 662


>gi|261363659|ref|ZP_05976542.1| excinuclease ABC subunit B [Neisseria mucosa ATCC 25996]
 gi|288568201|gb|EFC89761.1| excinuclease ABC subunit B [Neisseria mucosa ATCC 25996]
          Length = 672

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/662 (53%), Positives = 481/662 (72%), Gaps = 5/662 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K +
Sbjct: 610 DSGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEN 669

Query: 797 PY 798
            +
Sbjct: 670 LF 671


>gi|312883745|ref|ZP_07743465.1| excinuclease ABC subunit B [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368595|gb|EFP96127.1| excinuclease ABC subunit B [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 676

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/668 (54%), Positives = 482/668 (72%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI QLL+G+ S    Q LLGVTGSGKTFT+A VI + QRPAI++A
Sbjct: 5   FDLVSEYSPAGDQPQAIEQLLEGLESGLAHQTLLGVTGSGKTFTLANVIASAQRPAILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  ESY +M++ ++ GD + Q+E+L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPESYLKMMLHIRRGDYINQREILLRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKI 379
           D+   RG FRV G+ I+IFP+  E  A R+ MF ++++ IS F PLTG  K R++    I
Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESEQDAVRIEMFDDEVDCISIFDPLTGVVKQRDLARYTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL  R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRDRILDAIENIKVELSARRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRLEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATPG++ELE+    I +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFESLAPQTIFVSATPGNYELEKSGSDIADQVVRPTGLLDPEI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI L +++  R+L+T LTKRMAEDLTEYL E +++VRY+HS++ T+
Sbjct: 425 EVRPVSTQVDDLLSEIRLRSKKDERVLVTTLTKRMAEDLTEYLNEHDVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++ K ILYAD  T S+  AI ET RRR KQ  +N++  I P+++K  I ++++   L 
Sbjct: 545 RNISGKAILYADRHTNSMNRAIGETNRRRLKQQAYNEEIGIVPRALKRNIKDIME---LG 601

Query: 740 DAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D   +    +++ + LS+             ++ +  +  L  +M+  A +L FE AA  
Sbjct: 602 DMTKSRSQRESKVVPLSQVAEPTVGYQNMSPQQLEKEIAKLETEMYQHAQDLEFELAADK 661

Query: 787 RDEIKRLK 794
           RD+I  L+
Sbjct: 662 RDKIDTLR 669


>gi|56417238|ref|YP_154312.1| excinuclease ABC subunit B [Anaplasma marginale str. St. Maries]
 gi|81821246|sp|Q5P9H3|UVRB_ANAMM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56388470|gb|AAV87057.1| excinuclease ABC subunit B [Anaplasma marginale str. St. Maries]
          Length = 651

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/657 (53%), Positives = 480/657 (73%), Gaps = 12/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++++PSGDQP AI  L++GI    K Q LLGVTGSGKTFTMA VIE  QRPAI++A
Sbjct: 4   FKISSEFNPSGDQPGAIDSLVRGISCGAKEQTLLGVTGSGKTFTMASVIEQTQRPAIIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+ E ++FFP NAVEYFVSYYDYYQPEAY+P++D YIEK++ IN++ID +RH
Sbjct: 64  HNKTLAAQLHEEMRSFFPENAVEYFVSYYDYYQPEAYIPQSDVYIEKDALINDKIDLLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D +VV+SVSCIYG+GS E YS+M V + +G  ++  +L   LV+ QYK  
Sbjct: 124 SATRSLLERRDVVVVASVSCIYGLGSPELYSEMTVPIALGMKLDMCQLQERLVELQYKHG 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RG F V GD + +FPSH ED  W++S FG++++ I E  P +G     +E IKI+
Sbjct: 184 N-RYERGNFSVQGDVLSVFPSHYEDRIWKISFFGDEVDSIQEVDPKSGMVTLKLEKIKIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHYVTPRPTL  A+  I++EL    ++ ++  +++EA R+ +R  +D+EM+  TG+C+
Sbjct: 243 PNSHYVTPRPTLLQAISEIEKELDECALQFKQCNKIVEADRIVERTRFDIEMMRETGTCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL G+  G+PP TL +Y+P+D+++F+DESH+T+PQI  MY GD  RKA L  +
Sbjct: 303 GIENYSRYLCGKEAGDPPNTLLDYLPQDAIMFIDESHMTVPQIRAMYNGDRMRKANLINH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS +DNRPL F EW   +PT + VSATPG +EL+Q  G+  EQ+IRPTGL+DP   
Sbjct: 363 GFRMPSALDNRPLTFAEWEDRKPTVVYVSATPGQYELQQTGGVATEQLIRPTGLLDPVCI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ A  Q+ DV  E      +G R+L+T LTK+MAE+LTEY+ E  I+V Y+HS+VKTLE
Sbjct: 423 VKGADGQIHDVMCESQATIARGYRVLITTLTKKMAENLTEYMREMGIKVAYLHSDVKTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII DLRLG  DVLVG+NL+REGLDIPEC LV ILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 483 RIEIISDLRLGVIDVLVGVNLMREGLDIPECALVGILDADKEGFLRSTTSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +VILYA+ ITKS++ A++ET RRR+ Q ++N++H+I P+++++ +         + 
Sbjct: 543 NVEGRVILYANVITKSMRTAMEETDRRRDIQRKYNQEHSIVPRTIQKPV---------QT 593

Query: 741 AATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + +  +    +++S       A+  +  L+K+M L A+NL+FE A  IR+EIKRL +
Sbjct: 594 SLSERVGSSRKKVSRDTNTDPANRDIVELQKEMLLCAENLDFERAVEIRNEIKRLTA 650


>gi|157369560|ref|YP_001477549.1| excinuclease ABC subunit B [Serratia proteamaculans 568]
 gi|189037998|sp|A8GBD1|UVRB_SERP5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|157321324|gb|ABV40421.1| excinuclease ABC, B subunit [Serratia proteamaculans 568]
          Length = 670

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/659 (55%), Positives = 468/659 (71%), Gaps = 5/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI++L +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHSEFKPAGDQPQAISKLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++++NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I++FP+  +++A R+ +F  ++E +S F PLTGQ  + V+   IY
Sbjct: 185 DQAFQRATFRVRGEVIDVFPAESDELALRIELFDEEVERLSLFDPLTGQIEQVVQRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  +  AM+ IK +L  R   L    +LLE QRL QR  +DLEM++  G C 
Sbjct: 245 PKSHYVTPRERILQAMEEIKVDLAERRKVLLANNKLLEEQRLTQRTQFDLEMMKELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL VDESHVTIPQI  MY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRKEGEPPPTLFDYLPADGLLVVDESHVTIPQIGAMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGDDIIDQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI        R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVTTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N+N K ILY D IT S+  AI ET RRR KQ   N+++ I PQ + +K+ +V+    P  
Sbjct: 545 NLNGKAILYGDRITDSMARAISETERRRAKQQAFNEENGIVPQGLNKKVSDVLQLGKPGN 604

Query: 738 LEDAATTNISID--AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                    + +   Q  +L+ K     ++ L  QM+  A NL FE AA +RDEI +L+
Sbjct: 605 RGKGRGKGKAAENVGQYKNLTPKALDQKIRELEAQMYTHAQNLEFELAAGLRDEIHQLR 663


>gi|332686176|ref|YP_004455950.1| excinuclease ABC subunit B [Melissococcus plutonius ATCC 35311]
 gi|332370185|dbj|BAK21141.1| excinuclease ABC subunit B [Melissococcus plutonius ATCC 35311]
          Length = 664

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/656 (55%), Positives = 475/656 (72%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI QL++GI   EK Q+LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 10  FELVSKYQPQGDQPEAIKQLIQGIDQGEKAQVLLGATGTGKTFTISNVIKEINKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+G  + YS+ +V L+ G  +E+ +LL+SL+  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGDPKEYSEQVVSLRKGMEIERNQLLNSLIDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++IE I E   LTG+ I ++E I I+
Sbjct: 190 DIDFQRGRFRVHGDIVEIFPTSRDEHAIRVEFFGDEIERIREVDALTGELIDDLEHIAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A++ I+ EL  RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFVTNEEQMEKAIQRIQTELDERLTTLRNENKLLEAQRLEQRTNYDVEMMREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ VDESHVT+PQI GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMEGREEGEPPYTLLDFFPDDFLIVVDESHVTMPQIRGMYNGDRARKQMLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPGS+E EQ    +V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLQLEEFEKHVNQIVYVSATPGSYEEEQTDK-VVQQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL E  I+V+Y+HS++KTLE
Sbjct: 429 VRPIMGQIDDLVGEINERVAKDQRVFVTTLTKKMAEDLTDYLRELGIKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLG+FDVL+GINLLREGLD+PE  L+AILDADKEG LRS+ SL+QTIGRAAR
Sbjct: 489 RTEIIRNLRLGEFDVLIGINLLREGLDVPEVSLIAILDADKEGLLRSERSLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+Y D IT S+Q AIDET RRR  Q ++NK+H I P+++ ++I ++I      D
Sbjct: 549 NEEGKVIMYGDKITDSMQKAIDETARRRTIQEDYNKQHGIVPKTIIKEIRDLISISKTTD 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             T + S+D     LS ++ K  L  L K+M  AA  L+FE AA +RD I  LK+S
Sbjct: 609 NKTIS-SMDTSYSKLSHQEKKDLLMKLEKEMRDAAKVLDFETAATLRDTILELKAS 663


>gi|323693174|ref|ZP_08107392.1| UvrABC system protein B [Clostridium symbiosum WAL-14673]
 gi|323502657|gb|EGB18501.1| UvrABC system protein B [Clostridium symbiosum WAL-14673]
          Length = 662

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/654 (53%), Positives = 472/654 (72%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI  L+KG     + + LLGVTGSGKTFTMA VI+ +Q+P +++A
Sbjct: 3   FKLHSEFKPTGDQPQAIEALVKGFKEGNQCETLLGVTGSGKTFTMANVIQQLQKPTLIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID++RH
Sbjct: 63  HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E++  L+  QY R 
Sbjct: 123 SATAALSERQDVIIVASVSCIYGLGSPIDYKEMVISLRPGMIKDRDEIIHKLIDIQYTRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD +EI+P++    A+RV  FG++++ I+E   LTG+    +  I I+
Sbjct: 183 DMDFKRGSFRVRGDVLEIYPAYSAGDAYRVEFFGDEVDRIAEIDTLTGEVKSQLGHIAIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV PR  +  A   I EELK+R+ E + E +LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 243 PASHYVIPREKMEQAATNILEELKVRVAEFKSEDKLLEAQRISERTNFDVEMMRETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PGEPP TL +Y PE+ L+ VDESH+T+PQ+ GMY GD  RK TL  +
Sbjct: 303 GIENYSRHLTGSLPGEPPCTLIDYFPEEFLIIVDESHITLPQVRGMYAGDRSRKQTLVNF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATP  +E E+ + +  EQIIRPTGL+DPP+E
Sbjct: 363 GFRLPSALDNRPLNFSEFESKIDQIMFVSATPSKYE-EEHEMLRTEQIIRPTGLLDPPIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N   ++G ++L+T LTKRMAEDL++Y+ E  IRV+Y+HS++ TLE
Sbjct: 422 VRPVEGQIDDLVSEVNREVEKGFKVLITTLTKRMAEDLSDYMREVGIRVKYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQT+GRAAR
Sbjct: 482 RAEIIRDMRLNVFDVLVGINLLREGLDIPEISLVAILDADKEGFLRSETSLIQTVGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S++ AI ET RRR  Q  +N++H I P ++K+ + ++I      +
Sbjct: 542 NSEGHVIMYADNITDSMRAAIVETERRRRIQQAYNEEHGITPTTIKKAVRDLITISQAAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             T  ++ D +  S+ KK+ +  +K L K+MH AA  LNFEEAA +RD +  +K
Sbjct: 602 GITNEVTKDPE--SMDKKELEKLIKELMKKMHKAAAELNFEEAAALRDRMTEIK 653


>gi|240128477|ref|ZP_04741138.1| excinuclease ABC subunit B [Neisseria gonorrhoeae SK-93-1035]
 gi|268686866|ref|ZP_06153728.1| UvrB [Neisseria gonorrhoeae SK-93-1035]
 gi|268627150|gb|EEZ59550.1| UvrB [Neisseria gonorrhoeae SK-93-1035]
          Length = 675

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/667 (53%), Positives = 480/667 (71%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP   
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQTI 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR+G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRIGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ A+DET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +        +Q     K G+ H        +  L K M  AA +L FEEAA +RD I+ 
Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665

Query: 793 LKSSPYF 799
           +K +  F
Sbjct: 666 IKENLLF 672


>gi|240013900|ref|ZP_04720813.1| excinuclease ABC subunit B [Neisseria gonorrhoeae DGI18]
 gi|240121469|ref|ZP_04734431.1| excinuclease ABC subunit B [Neisseria gonorrhoeae PID24-1]
 gi|293398869|ref|ZP_06643034.1| excinuclease ABC, B subunit [Neisseria gonorrhoeae F62]
 gi|291610283|gb|EFF39393.1| excinuclease ABC, B subunit [Neisseria gonorrhoeae F62]
          Length = 675

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/667 (53%), Positives = 480/667 (71%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA L++G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLIEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP   
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQTI 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ A+DET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +        +Q     K G+ H        +  L K M  AA +L FEEAA +RD I+ 
Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665

Query: 793 LKSSPYF 799
           +K +  F
Sbjct: 666 IKENLLF 672


>gi|134302179|ref|YP_001122148.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049956|gb|ABO47027.1| excinuclease ABC, B subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 668

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/660 (53%), Positives = 478/660 (72%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T Y P+GDQP AI  L+ GI++  + Q+LLGVTGSGKT+TMA VI+  Q+P +++A
Sbjct: 4   FNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++MR 
Sbjct: 64  HNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY R 
Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +K++++    I+
Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRATIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            ++HYV  +      ++ IK+ELK R+   EKEG+LLEAQR+EQR  YD+EM++  G C 
Sbjct: 244 PSTHYVASKERKEIVIEDIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELGYCT 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RK+ L  Y
Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   V+Q+IRPTGL+DP V 
Sbjct: 364 GFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDPEVF 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QVED   EIN A  +  R+L+T LTK+M E+LTEYL E  + VRY+HS++ T+E
Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERVLITTLTKKMVENLTEYLSEHGVNVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR AR
Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738
           N N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D  P + 
Sbjct: 543 NQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSPEMQ 602

Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + A   N+ +    + +S   G       +K+L K+M   A  L FE+A  IRD+I  +K
Sbjct: 603 KRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKITEIK 662


>gi|153854478|ref|ZP_01995756.1| hypothetical protein DORLON_01751 [Dorea longicatena DSM 13814]
 gi|149753004|gb|EDM62935.1| hypothetical protein DORLON_01751 [Dorea longicatena DSM 13814]
          Length = 667

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/656 (54%), Positives = 476/656 (72%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  Y P+GDQP AIA+L+KG     + Q LLGVTGSGKTFTMA VI+ +Q+P +V+A
Sbjct: 9   FKLKAPYKPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLQKPTLVIA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAYVP +DTYI K+SS+NE+ID++R 
Sbjct: 69  HNKTLAAQLYGEFKEMFPENAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSVNEEIDKLRL 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L+ER D IV++SVSCIYG+G  E++ QM+V L+ G   ++ E+L  L+  QY R 
Sbjct: 129 SATAALIERRDVIVIASVSCIYGLGEPENFEQMMVSLRPGMEKDRDEVLRQLIDIQYDRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P+   D A RV  FG++I+ ISE   LTG+    +  I I+
Sbjct: 189 DMDFKRGTFRVRGDTVEIVPADRGDTAIRVEFFGDEIDRISEIDMLTGEVKNTLNHIAIF 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +  A++ I+ EL+ ++   + EG+LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 249 PASHYVVPKERMEKAIRNIEIELEEQVKYFKSEGKLLEAQRIAERTNFDIEMMRETGFCS 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L G  PG+PP TL +Y P+D ++ +DESH T+PQI GMY GD  RK TL EY
Sbjct: 309 GIENYSRHLAGLAPGQPPNTLMDYFPDDFIIMIDESHKTVPQIGGMYHGDQSRKRTLVEY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       + VSATPG +E E+ + +  EQ+IRPTGL+DP VE
Sbjct: 369 GFRLPSALDNRPLSFDEFESKIDQVMFVSATPGKYE-EEHELLRAEQVIRPTGLLDPEVE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N       +IL+T LTKRMAEDLT+Y+ E  IRVRY+HS++ TLE
Sbjct: 428 VRPVEGQIDDLIGEVNKEIANKHKILITTLTKRMAEDLTDYMRELGIRVRYLHSDIDTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 488 RTEIVRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADTIT S++ A+DET RRRE Q+ +N++H I P+++++ + ++I   + + 
Sbjct: 548 NAEGHVIMYADTITDSMRAALDETQRRREVQMAYNEEHGITPKTIQKAVRDLI--AVSKK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A + + ++    S+S+K+ +  +K L KQM  AA +LNFE AA +RD++  LK +
Sbjct: 606 VAASEVQMEKDPESMSEKELEKLIKELEKQMKKAAADLNFEAAAELRDKLIELKKT 661


>gi|293397183|ref|ZP_06641457.1| excision endonuclease subunit UvrB [Serratia odorifera DSM 4582]
 gi|291420654|gb|EFE93909.1| excision endonuclease subunit UvrB [Serratia odorifera DSM 4582]
          Length = 670

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/660 (56%), Positives = 472/660 (71%), Gaps = 5/660 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V+
Sbjct: 4   LFKLHSDFKPAGDQPEAIRKLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR
Sbjct: 64  APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R
Sbjct: 124 LSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLAELQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    R TFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTGQ  + V+   I
Sbjct: 184 NDQAFQRATFRVRGEVIDIFPAESDELALRVELFDEEVERLSLFDPLTGQVEQVVQRFTI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  SHYVTPR  +  AM+ IK +L  R   L    +LLE QRL QR  +DLEM+   G C
Sbjct: 244 YPKSHYVTPRERILQAMEEIKVDLAERRQVLLANNKLLEEQRLTQRTQFDLEMMNELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL E
Sbjct: 304 SGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRSRKETLVE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+  G +++Q++RPTGL+DP V
Sbjct: 364 YGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDVIDQVVRPTGLLDPQV 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI        R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+
Sbjct: 424 EVRPVTTQVDDLLSEIRKRVAVNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 484 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----P 735
           RN+N K ILY D IT S+  AI ET RRR KQ  +N+++ I PQ + +KI +++      
Sbjct: 544 RNLNGKAILYGDRITDSMARAIGETERRRAKQQAYNQENGIVPQGLNKKIADILQLGQPS 603

Query: 736 ILLEDAATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              +    +  + +A Q   L+ K     ++ L  QM+  A NL FE+AA +RDEI +L+
Sbjct: 604 SRGKGKGKSKAAENATQYQQLTPKALDQKIRELEAQMYTHAQNLEFEQAAALRDEIHQLR 663


>gi|332975216|gb|EGK12116.1| excision endonuclease subunit UvrB [Kingella kingae ATCC 23330]
          Length = 679

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/666 (53%), Positives = 474/666 (71%), Gaps = 8/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLDGLADGLSSQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ RND I+V++VS IYGIG    Y QM++ +K GD ++Q++++++LV  QY+R 
Sbjct: 131 SATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDQIDQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD ++++P+   D A R+S+F ++I+ +S F PL+G   + V    I+
Sbjct: 191 DVDFKRGSFRVRGDVVDVYPAESSDYALRISLFDDEIDRLSLFDPLSGSLHQRVGRYTIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+     E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRQRIEFYTNENRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P++++LF+DESHVTI QI  MY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPKNAILFIDESHVTIGQIGAMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+    P T+ VSATP ++E E   G IVEQ++RPTGL+DP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFERAMPQTVFVSATPAAYEAEHA-GQIVEQVVRPTGLLDPEII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN+  ++G R+L+T LTKRMAE LT+Y  E  ++VRY+HS++ T+E
Sbjct: 430 IRPVGTQVDDLLSEINIRKEKGERVLVTTLTKRMAEQLTDYYTELGVKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ + +K+ ++ID +   +
Sbjct: 550 NVNGVAILYADKITDSMKSAIDETERRREKQMKFNEEHGIVPQQINKKVKDLIDGVYNAE 609

Query: 741 AATTNISIDAQQLSL-------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                                 +++     +  L KQM  AA +L FEEAA +RD+I+ +
Sbjct: 610 TEVLGSLKTKSSKKKASKTEIRTEQDAIDEITRLEKQMQQAARDLQFEEAAVLRDKIRVI 669

Query: 794 KSSPYF 799
           K S  F
Sbjct: 670 KESLLF 675


>gi|212703191|ref|ZP_03311319.1| hypothetical protein DESPIG_01233 [Desulfovibrio piger ATCC 29098]
 gi|212673457|gb|EEB33940.1| hypothetical protein DESPIG_01233 [Desulfovibrio piger ATCC 29098]
          Length = 674

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/660 (54%), Positives = 466/660 (70%), Gaps = 6/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  L+  + +    Q+LLGVTGSGKTFTM  VI    RPA+V+A
Sbjct: 7   FKLHSAYVPTGDQPEAIDSLVANLEAGVPEQILLGVTGSGKTFTMVNVIARCGRPALVLA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ ID++RH
Sbjct: 67  PNKTLAAQLYNEFREFFPQNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R D I+V+SVSCIYG+GS E Y++MI+ +++G  +    L++ LV+ QY+R 
Sbjct: 127 AATHALLTRRDVIIVASVSCIYGLGSPEFYARMIIPVEVGQHMSMDALITRLVEVQYERN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD +EI P++  + A R+  FG+DI+ + E  PLTG  +  V    IY
Sbjct: 187 DYDFHRGTFRVRGDVLEIIPAYHHERALRIEFFGDDIDSMREVDPLTGDVLAEVGKTVIY 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+V+ +  L      I++EL  RL   +  GRL+EAQRLEQR   DLEM+E  G C 
Sbjct: 247 PASHFVSAQDNLKRTTADIRQELLERLTAFKASGRLVEAQRLEQRTQLDLEMIEELGYCN 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  GEPP  L  Y PED +LFVDESH+T+PQ+ GM++GD  RK TL +Y
Sbjct: 307 GIENYSRHLDGRKAGEPPSCLLNYFPEDFILFVDESHITVPQVGGMFKGDRSRKQTLVDY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+  L    + VSATPG +E++Q QGII EQIIRPTGLVDP VE
Sbjct: 367 GFRLPSALDNRPLQFDEFRSLLHQVVYVSATPGKYEMDQSQGIISEQIIRPTGLVDPEVE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q+ED+  E     ++G R+L+T LTKRMAEDLTEY     +  RY+HS++ TLE
Sbjct: 427 VRPTKGQMEDLLGECRERIRRGERVLVTTLTKRMAEDLTEYCCNMGVNARYLHSDIDTLE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIR LR G+FDVLVGINLLREGLDIPE  LV ILDADKEGFLRS  SLIQT GRAAR
Sbjct: 487 RLQIIRALRQGEFDVLVGINLLREGLDIPEVSLVCILDADKEGFLRSTGSLIQTFGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VILYADT+T S++ A+DET RRR KQ  +N +H I P+S ++ +   +D + ++ 
Sbjct: 547 NVHGHVILYADTVTASMRAAMDETERRRAKQTAYNTEHGITPRSTRKSLESPLDALYVDT 606

Query: 741 AATT------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           ++++        S     + L+ +   A ++ L K+M  AA  L FE AA +RD I+ L+
Sbjct: 607 SSSSRGKGKGRASRQDDAVPLTAEDTAALVQRLEKEMREAARELEFERAAALRDRIRALR 666


>gi|59801006|ref|YP_207718.1| excinuclease ABC subunit B [Neisseria gonorrhoeae FA 1090]
 gi|75507400|sp|Q5F931|UVRB_NEIG1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|59717901|gb|AAW89306.1| excinuclease ABC subunit B [Neisseria gonorrhoeae FA 1090]
          Length = 675

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/667 (53%), Positives = 479/667 (71%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA L++G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLIEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP   
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQTI 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ A+DET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +        +Q     K G+ H        +  L K M  AA +L FEEAA +RD I  
Sbjct: 610 DSGKG----RRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRISN 665

Query: 793 LKSSPYF 799
           +K +  F
Sbjct: 666 IKENLLF 672


>gi|271964484|ref|YP_003338680.1| excinuclease ABC subunit B [Streptosporangium roseum DSM 43021]
 gi|270507659|gb|ACZ85937.1| excinuclease ABC subunit B [Streptosporangium roseum DSM 43021]
          Length = 711

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/689 (52%), Positives = 489/689 (70%), Gaps = 26/689 (3%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + +  + +  F++ TD  PSGDQP AIA+L + + + +K  +LLG TG+GKT T+A +IE
Sbjct: 12  VTDLQRKVAPFEVVTDMTPSGDQPTAIAELERRVKAGDKDNVLLGATGTGKTATVAWLIE 71

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +V+ PNK LAAQ  +E +   P+NA+EYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 72  RLQRPTLVIQPNKTLAAQFANELREMMPNNAIEYFVSYYDYYQPEAYVPQSDTYIEKDSS 131

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN++++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +  LK+G  +E+  LL 
Sbjct: 132 INDEVERLRHSATNSLLTRRDTIVVASVSCIYGLGTPQEYVDRMTSLKVGQEIERDSLLR 191

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV  QY R D+   RGTFRV GD+IEI P + E++A R+ MFG++IE++S  +PLTG+ 
Sbjct: 192 RLVDMQYTRNDLAFTRGTFRVRGDTIEIIPKY-EELAVRIEMFGDEIEKLSTMHPLTGEV 250

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I   E + I+  SHYV     +  A++ I+ EL   L  +E++G+LLEAQRL  R TYDL
Sbjct: 251 ITEDEELYIFPASHYVAGTERMEKAVRGIEAELAQTLETMERQGKLLEAQRLRMRTTYDL 310

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   G+C  IENYSR++ GR PG  P TL +Y PED LL +DESH T+PQI  MY GD
Sbjct: 311 EMMRQIGTCSGIENYSRHMDGRAPGSAPNTLLDYFPEDFLLVLDESHQTVPQIGAMYEGD 370

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL E+GFRLPS MDNRPL++EE+      T+ +SATPG++EL + +G +VEQ+IR
Sbjct: 371 ASRKRTLVEHGFRLPSAMDNRPLKWEEFLERIDQTVYLSATPGTYELGRSKGDVVEQVIR 430

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++  ++Q++D+  EI    ++  R+L+T LTK+M+EDLT+YL E  IRVR
Sbjct: 431 PTGLVDPEVIVKPTKSQIDDLVHEIRTRTEKDERVLVTTLTKKMSEDLTDYLLELGIRVR 490

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSEV TL RIE++R+LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TS
Sbjct: 491 YLHSEVDTLRRIELLRELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETS 550

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT S++ AI+ET RRR KQ  +N+ + I+PQ +++KI 
Sbjct: 551 LIQTIGRAARNVSGQVHMYADRITPSMERAIEETNRRRAKQTAYNEANGIDPQPLRKKIA 610

Query: 731 EVIDPILLEDAATTNI---------------------SIDAQQLSLSKKKGKAHL----K 765
           +++D +  EDA T  +                      +     +++ +  +A L    +
Sbjct: 611 DILDSLNREDADTAQLLGGSGRQQSRGKAPVPGFVVKQVGQHAKAIAGEMPRAQLEALVE 670

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           SL  QMH AA +L FE AAR+RDEIK LK
Sbjct: 671 SLTDQMHQAATDLQFEVAARLRDEIKELK 699


>gi|254373124|ref|ZP_04988613.1| excinuclease ABC subunit B [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570851|gb|EDN36505.1| excinuclease ABC subunit B [Francisella novicida GA99-3549]
          Length = 668

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/660 (53%), Positives = 478/660 (72%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T Y P+GDQP AI  L+ GI++  + Q+LLGVTGSGKT+TMA VI+  Q+P +++A
Sbjct: 4   FNLVTKYAPAGDQPQAIQSLVDGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++MR 
Sbjct: 64  HNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY R 
Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +K++++    I+
Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRATIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            ++HYV  +      ++ IK+ELK R+   EKEG+LLEAQR+EQR  YD+EM++  G C 
Sbjct: 244 PSTHYVASKERKEIVIEEIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELGYCT 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESH T+PQ  GMY+GD  RK+ L  Y
Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHATLPQFGGMYKGDLSRKSNLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   V+Q+IRPTGL+DP V 
Sbjct: 364 GFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDPEVF 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QVED   EIN A  +  R+L+T LTK+MAE+LTEYL E  + VRY+HS++ T+E
Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERVLITTLTKKMAENLTEYLSEHGVNVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR AR
Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738
           N N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D  P + 
Sbjct: 543 NQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSPEIQ 602

Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + A   N+ +    + +S   G       +K+L K+M   A  L FE+A  IRD+I  +K
Sbjct: 603 KRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKITEIK 662


>gi|269213500|ref|ZP_05982104.2| excinuclease ABC subunit B [Neisseria cinerea ATCC 14685]
 gi|269146269|gb|EEZ72687.1| excinuclease ABC subunit B [Neisseria cinerea ATCC 14685]
          Length = 746

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/692 (52%), Positives = 489/692 (70%), Gaps = 17/692 (2%)

Query: 124 TPHRSWSINNHSKDITF------------FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ 171
           TP   +S  +H  DIT             F++   + P+GDQP AIA LL+G+      Q
Sbjct: 53  TPAHIFSPTSHVLDITGKIMEVIQYPDSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQ 112

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
            LLGVTGSGKT+TMA VI    RPAI+MA NK LAAQLY+E + FFP NAVEYFVSYYDY
Sbjct: 113 TLLGVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLYAEMREFFPENAVEYFVSYYDY 172

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           YQPEAYVP  D +IEK+S+INE I++MR SAT++L+ R+D I+V++VS IYGIG    Y 
Sbjct: 173 YQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQ 232

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           QM++ +K GD++EQ++++++LV  QY+R D+   RG+FRV GD I+++P+   + A R+S
Sbjct: 233 QMVLSVKEGDTIEQRDIIATLVSIQYERGDLDFKRGSFRVRGDVIDVYPAESSENALRIS 292

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++I+ +  F PL+G   + V    ++ +SHYVTPR T+  A + IKEEL+ R+    
Sbjct: 293 LFDDEIDRLDMFDPLSGSLHQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRERIEFFA 352

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
           +E R +E QR+EQR  +DLEML   G C+ IENYSR+ +G+  GEPPPTL +Y+P+++++
Sbjct: 353 REQRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIM 412

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           F+DESHVT+ QI GMY+GD  RK  L +YGFRLPS  DNRPL+F E+  + P T+ VSAT
Sbjct: 413 FIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVMPQTVFVSAT 472

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
           P  +E E+  G +VEQ++RPTGLVDP + IR   TQV+D+  EIN   Q+G R+L+T LT
Sbjct: 473 PAKYE-EEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQKGERVLVTTLT 531

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           KRMAE LT+Y  E  I+VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE 
Sbjct: 532 KRMAEQLTDYYSELGIKVRYLHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEV 591

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
            LVAILDADKEGFLRS  SLIQTIGRAARNVN   ILYAD IT S++ AIDET RRREKQ
Sbjct: 592 SLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYADKITDSMKAAIDETERRREKQ 651

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL----SKKKGKAHLKSL 767
           ++ N++H I PQ +K+++ ++ID +  E+           ++ +    +++     +  L
Sbjct: 652 IKFNEEHGIVPQQIKKQVKDIIDGVYHEEDGGKGRLKGKNKVKVGEIHNEEDAIKEIAKL 711

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
            K M  AA +L FEEAA +RD I+ +K +  F
Sbjct: 712 EKAMQQAARDLQFEEAAVLRDRIRGIKENLLF 743


>gi|126652449|ref|ZP_01724621.1| excinuclease ABC subunit B [Bacillus sp. B14905]
 gi|126590720|gb|EAZ84835.1| excinuclease ABC subunit B [Bacillus sp. B14905]
          Length = 659

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/654 (55%), Positives = 474/654 (72%), Gaps = 1/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q  Y P+GDQP AIA+L++G+ + ++ Q LLG TG+GKTFT++ VI+ +++P ++MA
Sbjct: 4   FDLQAPYQPNGDQPQAIAELVEGVKAGKRHQTLLGATGTGKTFTISNVIQQVKKPTLIMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++ID++RH
Sbjct: 64  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+GS E Y +M+V ++ G  +E+ +LL  LV  QY+R 
Sbjct: 124 SATSALFERDDVIIIASVSCIYGLGSPEEYREMVVSIRTGMEIERNQLLRKLVDVQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ + + E + I+
Sbjct: 184 DVSFTRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEILSDREHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL  L  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 244 PASHFVTREEKMRKAIENIEKELEDRLALLRAEDKLLEAQRLEQRTRYDLEMMREMGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED LL VDESHVT+PQ+ GMY GD  RK  L E+
Sbjct: 304 GIENYSRHLTLREAGATPYTLLDYFPEDFLLVVDESHVTLPQVRGMYNGDQARKGVLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       I VSATPG +ELE    +I +QIIRPTGL+DP ++
Sbjct: 364 GFRLPSALDNRPLRFEEYENRVHQAIYVSATPGPYELEHTPEMI-QQIIRPTGLLDPLID 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++++ DEI        R+L+T LTK+M+EDLT YL E  ++V Y+HSE+KTLE
Sbjct: 423 VRPIEGQIDNLIDEIQGRIACDERVLVTTLTKKMSEDLTAYLKEMGLKVEYLHSEIKTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIR+LR G +DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RIEIIRELRKGTYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YAD +T S++ A+DET RRRE Q+ +N++H I PQ++ +KI EVI    + +
Sbjct: 543 NANGHVIMYADHVTDSMKKALDETKRRRELQMAYNEEHGITPQTISKKIPEVIRATQVAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              + ++   +   L+K +    L SL  +M  AA  L+FE AA +RD I  LK
Sbjct: 603 EEESYVTKATKGKKLTKAERDQLLASLEIEMKEAAKALDFERAAELRDTIFELK 656


>gi|145589676|ref|YP_001156273.1| excinuclease ABC subunit B [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048082|gb|ABP34709.1| Excinuclease ABC subunit B [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 718

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/671 (54%), Positives = 477/671 (71%), Gaps = 8/671 (1%)

Query: 135 SKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           +K +TF    + +   + P+GDQP AI  L++GI      Q LLGVTGSGKTFTMA VI 
Sbjct: 40  AKFVTFPDSPYHLYQPFPPAGDQPQAIDALVEGIEDGLTFQTLLGVTGSGKTFTMANVIA 99

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
              RPAI+ APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SS
Sbjct: 100 RTGRPAIIFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSS 159

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE I++MR SAT+SLLER D I+V++VS IYGIG+   Y  M++ L+ GD + Q+++L 
Sbjct: 160 INEHIEQMRLSATKSLLERRDVIIVATVSAIYGIGNPGDYHSMVMTLRPGDKMSQRDILM 219

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            L+  QY R +    RG FRV GD+I+IFP+   ++A RV +F + +E +  F PLTG+ 
Sbjct: 220 RLIAMQYDRNETDFKRGVFRVRGDTIDIFPAEHNELAVRVELFDDVVESLQFFDPLTGKI 279

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
            + +    +Y +SHYVTPR T+  A++ IK EL+ RL E  K+G+L+EAQRLEQR  +DL
Sbjct: 280 RQKIPRFTVYPSSHYVTPRETVLKAIETIKVELRTRLDEFVKDGKLVEAQRLEQRTRFDL 339

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML   G C+ IENYSR+L+G  PGE PPTL +Y+P D+L+F+DESHV I Q++ MY GD
Sbjct: 340 EMLNELGFCKGIENYSRHLSGAAPGEAPPTLVDYLPNDALMFLDESHVLIGQLNAMYNGD 399

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL E+GFRLPS MDNRPL+F E+      TI VSATP  +E +  QG +VEQ+ R
Sbjct: 400 KSRKHTLVEFGFRLPSAMDNRPLKFTEFETKMRQTIFVSATPADYE-KAHQGQVVEQVAR 458

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP +E+  A TQV+D+  +I+   +   R+L+TVLTKRMAE LT+YL +  ++VR
Sbjct: 459 PTGLVDPEIEVLPASTQVDDLLSQIHERVKVHERVLVTVLTKRMAEQLTDYLSDNGVKVR 518

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ S
Sbjct: 519 YVHSDIDTVERVEILRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERS 578

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV  K ILYAD IT S++ A+ ET RRR KQ+  NK H I P+ VK++I 
Sbjct: 579 LIQTIGRAARNVRGKAILYADRITDSMKRAMGETERRRTKQIAFNKLHGIEPKGVKKRIK 638

Query: 731 EVIDPILLEDAATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           ++ID +         +  +   A+   + +K   A +K L KQM+  A NL FE+AA  R
Sbjct: 639 DIIDGVYDVKEKRHEMQTEQERARYEDMGEKDLAAEIKRLEKQMNSEAKNLEFEKAASTR 698

Query: 788 DEIKRLKSSPY 798
           D + ++K   +
Sbjct: 699 DRLTKVKEMAF 709


>gi|308273879|emb|CBX30479.1| UvrABC system protein B [uncultured Desulfobacterium sp.]
          Length = 658

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/660 (53%), Positives = 474/660 (71%), Gaps = 8/660 (1%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           +DY P GDQP AI  L+ G+ S +K Q+LLGVTGSGKTFTMA VIE   +PA+V+APNK 
Sbjct: 2   SDYTPKGDQPNAIESLVSGVLSEKKHQVLLGVTGSGKTFTMANVIEKTGKPALVIAPNKT 61

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
           LAAQLYSEFK  FP NAVEYFVSYYDYYQPEAY+P +DTYI+K+SSIN+ ID++RHSATR
Sbjct: 62  LAAQLYSEFKLLFPENAVEYFVSYYDYYQPEAYIPSSDTYIQKDSSINDMIDKLRHSATR 121

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           S+L R D I+++SVSCI+G+G+ E Y  M V ++    +++ + L +LV+ QY+R D   
Sbjct: 122 SVLSRRDVIIIASVSCIFGLGAPEDYLSMRVHVEKNMELDRDKFLKNLVEMQYERNDYDF 181

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            RG+FRV GD +EIFP++ ED A R++ FG+++E+I+E  PL G  + ++ +  I+  SH
Sbjct: 182 FRGSFRVRGDRVEIFPAYEEDKAIRINFFGDEVEDIAEIDPLKGSILNSLNSATIFPASH 241

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
           YVT + TL  A+  I  ELK R+     E + +E QR+E+R  +D+EM++  G C  IEN
Sbjct: 242 YVTQKMTLKRAVDSILIELKERIEFFRNEKKYIETQRIEERTHFDVEMMQEIGYCNGIEN 301

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
           YSR+LTGR+PGE PPTL +Y P+D LLF+DESH+T+PQ+ GMY+GD  RK TL  +GFRL
Sbjct: 302 YSRHLTGRSPGEAPPTLLDYFPKDYLLFIDESHITVPQLHGMYKGDRSRKETLVNFGFRL 361

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           PS +DNRPLRF+E+       I  SATP  +ELE+ +G + E I+RPTGL+DP + ++SA
Sbjct: 362 PSALDNRPLRFDEFETRTSQVIYASATPADFELEKAKGSVAELIVRPTGLLDPAIHLKSA 421

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           + QV+D+++EI    Q+  R+L+T LTKRMAEDLTEY  + +I+V Y+HS++ T ER++I
Sbjct: 422 KNQVDDLFEEILARIQKNERVLVTTLTKRMAEDLTEYYSDLDIKVSYLHSDIGTFERMQI 481

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DLR G FDV++GINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT GRAARN+N 
Sbjct: 482 INDLRKGVFDVIIGINLLREGLDIPEVSLVAILDADKEGFLRSARSLIQTCGRAARNLNG 541

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
            +I+Y+D +T S++ AIDET RRR+ Q   NKKH I P S+++ I     P+    +A+ 
Sbjct: 542 SIIMYSDVLTNSMKQAIDETNRRRKIQKAFNKKHGITPVSIEKAIT----PLFEYASASD 597

Query: 745 NISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
             + D     +SK +   +    + +L K+M  AA  L+FE+AA +RD I  +K    F+
Sbjct: 598 KFAADKVSEVISKYESTNNIDEIISNLEKEMKKAAQELDFEKAAELRDNISAIKKKMVFE 657


>gi|94265897|ref|ZP_01289625.1| Excinuclease ABC, B subunit [delta proteobacterium MLMS-1]
 gi|93453556|gb|EAT03958.1| Excinuclease ABC, B subunit [delta proteobacterium MLMS-1]
          Length = 665

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/653 (55%), Positives = 462/653 (70%), Gaps = 4/653 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + +++ P+GDQP AI  L +G+ +    Q+LLGVTGSGKTFTMA+VI    RPA+V+
Sbjct: 1   MFDLVSEFAPAGDQPRAIELLSRGVMAGTPHQVLLGVTGSGKTFTMAQVIAETSRPALVL 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLYSEFK  FPHNAVEYFVSYYDYYQPEAY+P++DTYIEK+S+IN+ ID+MR
Sbjct: 61  APNKTLAAQLYSEFKELFPHNAVEYFVSYYDYYQPEAYIPQSDTYIEKDSAINDTIDQMR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H ATR+LL R D I+V+SVSCIYG+GS E Y  M + L++G+     E+   LV   Y+R
Sbjct: 121 HGATRALLTRRDVIIVASVSCIYGLGSPEEYLNMNLALQVGEDYPPAEIQRRLVHMLYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RGTFRV GD +EIFP H +D A RV +FG+ IE I    PL G     +E + +
Sbjct: 181 NDYSFHRGTFRVRGDVVEIFPVHEDDRALRVELFGDTIEAIRVVDPLRGVVHEELEEVTV 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT +   + A+K IK EL  RL EL    RLLEAQRLEQR  +DLEML+  G C
Sbjct: 241 FPGSHFVTSKERQDQAIKTIKAELTQRLAELHANKRLLEAQRLEQRTMFDLEMLQELGYC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+ T   PG PPPTL +Y P+D LLF DESHV IPQ+ GMYRGD  RK TL E
Sbjct: 301 HGIENYSRHFTRLPPGAPPPTLLDYFPDDYLLFTDESHVAIPQVRGMYRGDRSRKETLVE 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL F+E++      I VSATPG  ELE   G +VEQIIRPTGL+DP +
Sbjct: 361 YGFRLPSALDNRPLMFDEFSARVHQAIYVSATPGDHELEISGGRVVEQIIRPTGLMDPKI 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R A++QV+D+  EI   AQ+   IL+T LTKRMAEDL EY     +RVRY+HS++KTL
Sbjct: 421 EVRPAQSQVDDLLAEIRSRAQRDEAILVTTLTKRMAEDLCEYYRNIEVRVRYLHSDIKTL 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+E+IRDLR  ++DVLVGINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQT GRAA
Sbjct: 481 QRMELIRDLRRREYDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTCGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN +  VILY D I+ ++   I ET RRRE Q E+N++H I P +++ KI +++  +  +
Sbjct: 541 RNAHGMVILYGDKISAAMAATIAETERRREIQAEYNREHGITPATIRSKIKDLMATVYEQ 600

Query: 740 DAATTNIS----IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           D  T  +      + Q +  S+++ +  +K L K+M  AA  L FE+AA +RD
Sbjct: 601 DYTTVELPEEGVAEEQPVFRSREELRREIKELEKEMARAARELAFEDAAELRD 653


>gi|28377628|ref|NP_784520.1| excinuclease ABC subunit B [Lactobacillus plantarum WCFS1]
 gi|254555807|ref|YP_003062224.1| excinuclease ABC subunit B [Lactobacillus plantarum JDM1]
 gi|300767596|ref|ZP_07077506.1| excision endonuclease subunit UvrB [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308179788|ref|YP_003923916.1| excinuclease ABC subunit B [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|38258759|sp|Q88YI8|UVRB_LACPL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|28270461|emb|CAD63363.1| excinuclease ABC, subunit B [Lactobacillus plantarum WCFS1]
 gi|254044734|gb|ACT61527.1| excinuclease ABC subunit B [Lactobacillus plantarum JDM1]
 gi|300494581|gb|EFK29739.1| excision endonuclease subunit UvrB [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308045279|gb|ADN97822.1| excinuclease ABC subunit B [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 667

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/665 (53%), Positives = 477/665 (71%), Gaps = 8/665 (1%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
           NNH      F + +DY P+GDQP AI QL  GI S EK Q+LLG TG+GKTFT++ VI  
Sbjct: 7   NNH------FDLVSDYQPTGDQPQAIQQLTAGIESGEKEQILLGATGTGKTFTISNVIAK 60

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           + +P ++++ NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+I
Sbjct: 61  VNKPTLILSHNKTLAGQLYGEFKKFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAI 120

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           N++ID++RHSAT SLLERND IVV+SVS I+G+G    Y   +V L++G  +++ +LL  
Sbjct: 121 NDEIDKLRHSATSSLLERNDVIVVASVSSIFGLGDPHEYQDHVVSLRVGMEIDRNDLLRK 180

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV  Q+ R DI   RG FRV GD +EIFP+  +D A RV  FG++I+ I E   LTG+ +
Sbjct: 181 LVDIQFDRNDIDFQRGRFRVHGDVVEIFPASRDDHALRVEFFGDEIDRIREIDALTGEIV 240

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
            + E + I+  +H++T    +  A+K I++EL  RL EL  +G+LLEAQRL+QR TYD+E
Sbjct: 241 ADREHVAIFPATHFMTNDAIMEHAIKGIEDELDGRLKELTADGKLLEAQRLKQRTTYDVE 300

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           ML+  G    IENYSR++ GR PGEPP TL ++ P+D LL VDESHVT+PQ+ GMY GD 
Sbjct: 301 MLKEMGYTSGIENYSRFMDGRKPGEPPYTLLDFFPKDFLLVVDESHVTMPQVRGMYNGDR 360

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK  L +YGFRLPS +DNRPL+ EE        + +SATPG +E+++ +  +V+QIIRP
Sbjct: 361 ARKQMLVDYGFRLPSALDNRPLKLEEVEQHINQVVYMSATPGPYEMDRTKH-VVQQIIRP 419

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP +E+R    Q++D+  EIN   +   R+ +T LTK+MAEDLT+Y  +  I+VRY
Sbjct: 420 TGLLDPTIEVRPIMGQIDDLVGEINKRIEVNERVFITTLTKKMAEDLTDYFKDLGIKVRY 479

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS++KTLER +IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLR++ SL
Sbjct: 480 LHSDIKTLERTQIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSL 539

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARN +  VI+YADT T S+Q A+DET RRR  Q+++N+ H+I P ++K+ I E
Sbjct: 540 IQTIGRAARNEHGSVIMYADTTTDSMQAAMDETARRRAVQMKYNEDHHITPHTIKKAIPE 599

Query: 732 VIDPI-LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           +I      EDA   +  ++     +++++    +  L +QM  AA  L+FE+AA +RD +
Sbjct: 600 LIASTKTTEDAGKKDDFLETDFDDMTREQQLDMISKLEEQMKTAAKKLDFEQAATLRDTV 659

Query: 791 KRLKS 795
             LK+
Sbjct: 660 MELKA 664


>gi|323485835|ref|ZP_08091170.1| UvrABC system protein B [Clostridium symbiosum WAL-14163]
 gi|323400823|gb|EGA93186.1| UvrABC system protein B [Clostridium symbiosum WAL-14163]
          Length = 662

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/654 (53%), Positives = 472/654 (72%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI  L+KG     + + LLGVTGSGKTFTMA VI+ +Q+P +++A
Sbjct: 3   FKLHSEFKPTGDQPQAIEALVKGFKEGNQCETLLGVTGSGKTFTMANVIQQLQKPTLIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID++RH
Sbjct: 63  HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E++  L+  QY R 
Sbjct: 123 SATAALSERQDVIIVASVSCIYGLGSPIDYKEMVISLRPGMIKDRDEIIHKLIDIQYTRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD +EI+P++    A+RV  FG++++ I+E   LTG+    +  I I+
Sbjct: 183 DMDFKRGSFRVRGDVLEIYPAYSAGDAYRVEFFGDEVDRIAEIDTLTGEVKSQLGHIAIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV PR  +  A   I EELK+R+ E + E +LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 243 PASHYVIPREKMEQAATNILEELKVRVAEFKSEDKLLEAQRISERTNFDVEMMRETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PGEPP TL +Y PE+ L+ +DESH+T+PQ+ GMY GD  RK TL  +
Sbjct: 303 GIENYSRHLTGSLPGEPPCTLIDYFPEEFLIIIDESHITLPQVRGMYAGDRSRKQTLVNF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATP  +E E+ + +  EQIIRPTGL+DPP+E
Sbjct: 363 GFRLPSALDNRPLNFSEFESKIDQIMFVSATPSKYE-EEHEMLRTEQIIRPTGLLDPPIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N   ++G ++L+T LTKRMAEDL++Y+ E  IRV+Y+HS++ TLE
Sbjct: 422 VRPVEGQIDDLVSEVNREVEKGFKVLITTLTKRMAEDLSDYMREVGIRVKYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQT+GRAAR
Sbjct: 482 RAEIIRDMRLNVFDVLVGINLLREGLDIPEISLVAILDADKEGFLRSETSLIQTVGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S++ AI ET RRR  Q  +N++H I P ++K+ + ++I      +
Sbjct: 542 NSEGHVIMYADNITDSMRAAIVETERRRRIQQAYNEEHGITPTTIKKAVRDLITISQAAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             T  ++ D +  S+ KK+ +  +K L K+MH AA  LNFEEAA +RD +  +K
Sbjct: 602 GITNEVTKDPE--SMDKKELEKLIKELMKKMHKAAAELNFEEAAALRDRMTEIK 653


>gi|223932268|ref|ZP_03624271.1| excinuclease ABC, B subunit [Streptococcus suis 89/1591]
 gi|330832850|ref|YP_004401675.1| UvrABC system protein B (UvrB protein) [Streptococcus suis ST3]
 gi|223898949|gb|EEF65307.1| excinuclease ABC, B subunit [Streptococcus suis 89/1591]
 gi|329307073|gb|AEB81489.1| UvrABC system protein B (UvrB protein) [Streptococcus suis ST3]
          Length = 661

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/659 (54%), Positives = 482/659 (73%), Gaps = 12/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI  L+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+SLV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGQEISRDQLLNSLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ + +V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGDVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    + TA+  I+ EL+ +L   E EG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMETAIAKIQAELEEQLKIFEAEGKLLEAQRLKQRTDYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ    +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTD-TVVEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T+S++ A++ET RRR+ Q+ +N++H I PQ++K++I ++I       
Sbjct: 549 NSEGHVIMYADKVTESMRKAMEETARRRQIQMAYNEEHGIIPQTIKKEIRDLI------- 601

Query: 741 AATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + T  ++ D +++    +L+K + KA +K L  QM  AA+ L+FE AA+IRD +  LK+
Sbjct: 602 SVTKAVTQDKEEVVDFNALNKDERKAMIKKLEGQMQEAAEVLDFELAAQIRDMVIELKN 660


>gi|288905600|ref|YP_003430822.1| excinuclease ABC (subunit B) [Streptococcus gallolyticus UCN34]
 gi|288732326|emb|CBI13896.1| excinuclease ABC (subunit B) [Streptococcus gallolyticus UCN34]
          Length = 663

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/656 (54%), Positives = 478/656 (72%), Gaps = 5/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPEAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGEVEHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  I EE++ ++ + E EG+L+EAQR+ QR  YD+EML   G   
Sbjct: 250 PATHFMTNEEHMEHAIHNILEEMEEQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSRY+ GR+ GEPP TL ++ PED L+ VDESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRYMDGRSEGEPPFTLLDFFPEDFLIMVDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +ELEQ    +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYELEQTD-TVVEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN  A++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINSRAEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT+S+Q A+DET RRRE Q+ +N++H I PQ++K+ I    D I +  
Sbjct: 549 NSEGHVIMYADKITESMQKAMDETARRREIQMRYNEEHGIIPQTIKKDIR---DLIAISK 605

Query: 741 AATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           ++ T+++ D     +++K + +  +K L+KQM  AA+ L+FE AA++RD +  LK+
Sbjct: 606 SSDTDVAEDTPDYNAMTKAERQETIKKLQKQMQEAAEMLDFELAAQLRDMVLELKA 661


>gi|295395312|ref|ZP_06805516.1| excision endonuclease subunit UvrB [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971863|gb|EFG47734.1| excision endonuclease subunit UvrB [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 709

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/673 (53%), Positives = 490/673 (72%), Gaps = 21/673 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y PSGDQP AIA++ + +   EK  +LLG TG+GK+ T A +IE +QRP ++MA
Sbjct: 29  FEVVSEYSPSGDQPTAIAEIARRLDDGEKDVVLLGATGTGKSATTAWLIEKVQRPTLIMA 88

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH
Sbjct: 89  PNKTLAAQLANEFRQLLPHNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 148

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVS+VSCIYG+G+ E Y   +V L++G+ V++ ELL   V+ QY R 
Sbjct: 149 SATNSLLTRRDVVVVSTVSCIYGLGTPEEYVDRMVSLEVGEEVDRDELLKRFVEMQYTRN 208

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E++A R+  FG++IE +   +PLTG+ IR+ + + I+
Sbjct: 209 DMAFTRGTFRVRGDTVEIIPQY-EELAIRIEFFGDEIEALHTLHPLTGEVIRDEDIVHIF 267

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I++EL++RL ELEK+ +LLEAQRL+ R TYDLEM+++ G   
Sbjct: 268 PASHYVAGENRMGKAIAAIEDELQVRLAELEKQNKLLEAQRLKMRTTYDLEMMQSMGFTS 327

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P  L +Y PED LL +DESHVT+PQI GMY GD  RK TL E+
Sbjct: 328 GIENYSRHIDGRAAGTAPNCLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRTLVEH 387

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+      T+ +SATPG +ELE+ +G +VEQIIRPTGLVDP V 
Sbjct: 388 GFRLPSALDNRPLKFDEFLQRIGQTVYLSATPGDFELERSRG-VVEQIIRPTGLVDPKVT 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  R Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E +I+V+Y+HS+V TL+
Sbjct: 447 VKPTRGQIDDLLGEIRDRIEKNERVLVTTLTKKMAEDLTDYLLEHDIKVQYLHSDVDTLK 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++ +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQT+GRAAR
Sbjct: 507 RVELLSELRAGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSKSLIQTVGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +V +Y DTIT S++ AIDET RRRE Q+ +NK+H I+P+ + +KI ++ + +  ED
Sbjct: 567 NVNGEVHMYGDTITPSMREAIDETNRRREIQISYNKEHGIDPKPLVKKIADITERLQRED 626

Query: 741 AATTNI--------------SIDAQQL----SLSKKKGKAHLKS-LRKQMHLAADNLNFE 781
           A T  +              S+ +  L    + +  +  A L + L +QMH AA+ L FE
Sbjct: 627 ADTRELLTEFDYGKGKRGFNSVKSDTLKPDVTTAPSENLAELAAQLTEQMHEAAEQLQFE 686

Query: 782 EAARIRDEIKRLK 794
            AAR+RDE++ +K
Sbjct: 687 LAARLRDELQDIK 699


>gi|125972830|ref|YP_001036740.1| excinuclease ABC subunit B [Clostridium thermocellum ATCC 27405]
 gi|256005843|ref|ZP_05430793.1| excinuclease ABC, B subunit [Clostridium thermocellum DSM 2360]
 gi|281417029|ref|ZP_06248049.1| excinuclease ABC, B subunit [Clostridium thermocellum JW20]
 gi|125713055|gb|ABN51547.1| Excinuclease ABC subunit B [Clostridium thermocellum ATCC 27405]
 gi|255990207|gb|EEU00339.1| excinuclease ABC, B subunit [Clostridium thermocellum DSM 2360]
 gi|281408431|gb|EFB38689.1| excinuclease ABC, B subunit [Clostridium thermocellum JW20]
 gi|316940935|gb|ADU74969.1| excinuclease ABC, B subunit [Clostridium thermocellum DSM 1313]
          Length = 660

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/656 (56%), Positives = 475/656 (72%), Gaps = 6/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AI +L++GI+   + Q LLGVTGSGKTFTMA VIE +Q+P +V+A
Sbjct: 4   FKLVSDYKPCGDQPEAIDKLVEGINRGYRGQTLLGVTGSGKTFTMANVIERVQKPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP+N VEYFVSYYDYYQPEAY+P TDTYIEK+SSIN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFKEFFPNNCVEYFVSYYDYYQPEAYIPATDTYIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G  E Y+ +++ L+ G   ++ E++  LV  QY+R 
Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPEDYTDLMLSLRPGMIKDRDEIIRKLVDIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I   RG FRV GD +EIFP+   D   RV  FG +I+ I+E   LTG+       + I+
Sbjct: 184 EIDFKRGKFRVRGDILEIFPASSSDKVIRVEFFGEEIDRITEVDSLTGEITGVCSHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T +  +  A+  I++EL+ R+ EL+ +G+LLEAQRLEQR  YDLEM++  G CQ
Sbjct: 244 PASHYATTKAKMQRAIASIEQELEERVRELKSQGKLLEAQRLEQRTRYDLEMMQEIGFCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++GR PG PP TL +Y P+D LL +DESHVTIPQI  MY GD  RK +L EY
Sbjct: 304 GIENYSRHISGRAPGSPPFTLIDYFPKDFLLIIDESHVTIPQIGAMYNGDRSRKESLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I VSATP  +E E  Q  IVEQIIRPTGL+DP + 
Sbjct: 364 GFRLPSAFDNRPLTFEEFEKKINQVIFVSATPAKYEREHSQQ-IVEQIIRPTGLLDPEIV 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI+   Q+  R+++T LTK+MAEDLT+YL E + +V Y+HS++ T+E
Sbjct: 423 VKPVKGQIDDLIGEISERVQKNQRVMITTLTKKMAEDLTDYLRELDFKVEYLHSDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIR+LRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMEIIRNLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738
           NV  KVI+YADTIT S++ AIDET RRR+ Q E+N+KH I P+SV++ I +VI+   +  
Sbjct: 543 NVEGKVIMYADTITDSMRRAIDETNRRRKIQSEYNQKHGITPKSVQKGIRDVIEITKVAE 602

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           EDA      I   + S+ K +    ++ L  +M  AA  L FE AA +RD+I  LK
Sbjct: 603 EDA---KYFIRGDEDSMDKDEVLDLIEKLTNEMKAAAAELQFERAAELRDKIAELK 655


>gi|241759550|ref|ZP_04757653.1| excinuclease ABC subunit B [Neisseria flavescens SK114]
 gi|241320107|gb|EER56468.1| excinuclease ABC subunit B [Neisseria flavescens SK114]
          Length = 677

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/665 (53%), Positives = 479/665 (72%), Gaps = 7/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPKII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      +  +      +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 610 DGGKGRLKGKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRDIK 669

Query: 795 SSPYF 799
            +  F
Sbjct: 670 ENLLF 674


>gi|329116086|ref|ZP_08244803.1| excinuclease ABC, B subunit [Streptococcus parauberis NCFD 2020]
 gi|326906491|gb|EGE53405.1| excinuclease ABC, B subunit [Streptococcus parauberis NCFD 2020]
          Length = 663

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP AI +L+  I   EK Q+LLG TG+GKTFTM++VI  + +P +V+A
Sbjct: 10  FHLVSKYQPSGDQPQAIEELVDNIEGGEKAQILLGATGTGKTFTMSQVINRVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + ++
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRIREIESLTGKILGEVDHLVLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    + T++  I+ EL+ +L   E EG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDEHMETSIAKIQAELEEQLKLFESEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR  GEPP TL ++ PED ++ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 310 GVENYSRHMDGRAAGEPPYTLLDFFPEDFMIMIDESHMTMGQIKGMYNGDQARKKMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ   II EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTDTII-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR +  Q++D+  EIN  A++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 IRPSMGQMDDLLGEINTRAEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T+S++ AIDET RRR+ Q+++N +H+I P+++K++I ++I     + 
Sbjct: 549 NSEGHVIMYADKMTESMRKAIDETARRRQIQIDYNTEHDITPKTIKKEIRDLIGISKGKG 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A     S D    +++K + K  +K L+KQMH AA+ L+FE AA+IRD +  LK+
Sbjct: 609 ADVEETSPDYT--AMNKSERKEAIKKLQKQMHEAAEMLDFELAAQIRDIVIELKT 661


>gi|269127058|ref|YP_003300428.1| excinuclease ABC subunit B [Thermomonospora curvata DSM 43183]
 gi|268312016|gb|ACY98390.1| excinuclease ABC, B subunit [Thermomonospora curvata DSM 43183]
          Length = 704

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/681 (53%), Positives = 485/681 (71%), Gaps = 29/681 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ TD  PSGDQP AIA+L   I   ++  +LLG TG+GKT T+A +IE +QRP +VM 
Sbjct: 14  FKVVTDMTPSGDQPQAIAELEARIRRGDRDVVLLGATGTGKTATVAWLIERLQRPTLVMQ 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ  +E +   PHNAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSINE+++R+RH
Sbjct: 74  PNKTLAAQFANELRQMLPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ + Y   +V L++G  +++  LL  LV   Y R 
Sbjct: 134 SATNSLLTRRDTVVVASVSCIYGLGTPQEYVDRMVTLRVGMEIDRDALLRKLVDMHYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E++A R+ MFG++IE ++  +PL G+ + + + + I+
Sbjct: 194 DVAFTRGTFRVRGDTVEIIPQY-EELAVRIEMFGDEIERLATLHPLNGEVLGDSDEVHIF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I+ EL  RL ELE +G+LLEAQRL  R T+D+EM+   G+C 
Sbjct: 253 PASHYVAGPERMERAIAGIEAELAERLAELEAQGKLLEAQRLRMRTTHDIEMMRQVGTCS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESH T+PQI  MY GD  RK  L E+
Sbjct: 313 GIENYSRHIDGREPGSPPHTLLDYFPEDFLLVIDESHQTVPQIGAMYEGDASRKRMLVEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLR-PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL++EE+ C R   T+ +SATPG +EL +  G +VEQ+IRPTGLVDP +
Sbjct: 373 GFRLPSALDNRPLKWEEF-CERIGQTVYLSATPGPYELSRVGGDVVEQVIRPTGLVDPEI 431

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            ++  + Q++D+  EI L A++  R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL
Sbjct: 432 VVKPTKGQIDDLVHEIRLRAERDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSEVDTL 491

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            RIE++R+LR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAA
Sbjct: 492 RRIELLRELRSGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAA 551

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           R+V+ +V +YAD IT S+  AI+ET RRR KQ  +N +H I P++++++I +++D ++ E
Sbjct: 552 RHVSGQVHMYADQITPSMARAIEETNRRRAKQQAYNAEHGIEPKALRKRIADILDSLVRE 611

Query: 740 DAATTNISIDAQQLSLSK----------------------KKGKAHLKSL----RKQMHL 773
           DA T  +  D ++LS  K                      ++ +  L+SL     +QMH 
Sbjct: 612 DADTQTLLGDGRRLSRGKAPVPGLAPRTRQAGRHAADLVGERPREELESLIEQMTEQMHQ 671

Query: 774 AADNLNFEEAARIRDEIKRLK 794
           AA +L FE AAR+RDEIK LK
Sbjct: 672 AAADLQFELAARLRDEIKELK 692


>gi|187933656|ref|YP_001887535.1| excinuclease ABC subunit B [Clostridium botulinum B str. Eklund
           17B]
 gi|238691663|sp|B2TQS8|UVRB_CLOBB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|187721809|gb|ACD23030.1| excinuclease ABC, B subunit [Clostridium botulinum B str. Eklund
           17B]
          Length = 657

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/655 (54%), Positives = 472/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P GDQP AI  +LK I    + Q LLGVTGSGKTFTMA +IE +QRP +++A
Sbjct: 4   FKIHSKFKPMGDQPQAIDTILKSIKQGNEFQTLLGVTGSGKTFTMANIIENLQRPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFKEFFPENIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G+ + Y ++ + L+ G   E+ E++  L++ QY+R 
Sbjct: 124 SATSALFERRDVIIVASVSCIYGLGNPDEYKKLTISLRKGMQKERDEIIKKLIEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD ++I PS       R+  FG++I+ I EF  LTG  I     + I+
Sbjct: 184 DIDFSRGTFRVRGDLLDIIPSSTSSKGIRIEFFGDEIDRIREFDVLTGTIIGERNHVSIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T + T+  ++  I+ EL+ RL EL  + +LLEAQRL QR  +D+EM+   G C 
Sbjct: 244 PASHFATSKETVERSLGEIENELENRLRELNSQEKLLEAQRLRQRTNFDIEMIREMGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR PG PP TL +Y PED LLF+DESHVT+PQ+  MY GD  RK TL +Y
Sbjct: 304 GIENYSRILDGRAPGTPPKTLIDYFPEDFLLFIDESHVTLPQVRAMYAGDRSRKNTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+FEE+       + VSATP  +ELE  Q  I EQ+IRPTGL+DP + 
Sbjct: 364 GFRLPCAYDNRPLKFEEFEKKINQVMFVSATPAQYELEHSQS-IAEQVIRPTGLLDPEII 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+  + Q++D+Y EI     +G RIL+T LTKRMAEDLT+Y+ E  ++  YMHS++ T+E
Sbjct: 423 IKPVKGQIDDLYTEIQETISRGYRILITTLTKRMAEDLTKYMIELGVKATYMHSDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLG++DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMKIIRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+YAD ITKS++ AI ET RRR+ Q E+N++H I PQ++ +++ E+I+   + +
Sbjct: 543 NSESKVIMYADNITKSMKKAISETERRRKIQTEYNEEHGIIPQTINKEVRELIEATKVAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            + T   ++  + SL+KK+ K  +K    +M LAA NL FE AA++RD+I+ LK 
Sbjct: 603 ES-TEYGMEVTK-SLTKKEAKKLIKEYTDEMKLAAKNLQFERAAQLRDKIEELKG 655


>gi|146320885|ref|YP_001200596.1| excinuclease ABC subunit B [Streptococcus suis 98HAH33]
 gi|253751793|ref|YP_003024934.1| UvrABC system protein B (UvrB protein) [Streptococcus suis SC84]
 gi|253753616|ref|YP_003026757.1| UvrABC system protein B (UvrB protein) [Streptococcus suis P1/7]
 gi|253755503|ref|YP_003028643.1| UvrABC system protein B (UvrB protein) [Streptococcus suis BM407]
 gi|189038005|sp|A4W1F7|UVRB_STRS2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|145691691|gb|ABP92196.1| Helicase subunit of the DNA excision repair complex [Streptococcus
           suis 98HAH33]
 gi|251816082|emb|CAZ51703.1| UvrABC system protein B (UvrB protein) [Streptococcus suis SC84]
 gi|251817967|emb|CAZ55747.1| UvrABC system protein B (UvrB protein) [Streptococcus suis BM407]
 gi|251819862|emb|CAR45877.1| UvrABC system protein B (UvrB protein) [Streptococcus suis P1/7]
 gi|292558361|gb|ADE31362.1| Excinuclease ABC, B subunit [Streptococcus suis GZ1]
 gi|319758141|gb|ADV70083.1| excinuclease ABC subunit B [Streptococcus suis JS14]
          Length = 661

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/659 (53%), Positives = 483/659 (73%), Gaps = 12/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI  L+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYAPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL++LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGQEISRDQLLNALVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ + +V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGDVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    + TA+  I+ EL+ +L   E EG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMETAIAKIQAELEEQLKVFEAEGKLLEAQRLKQRTDYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T+S++ A++ET RRR+ Q+ +N++H I PQ++K++I ++I       
Sbjct: 549 NSEGHVIMYADKVTESMRKAMEETARRRQIQMAYNEEHGIIPQTIKKEIRDLI------- 601

Query: 741 AATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + T  ++ D +++    +L+K + KA +K L  QM  AA+ L+FE AA+IRD +  LK+
Sbjct: 602 SVTKAVTQDKEEVVDFNALNKDERKAMIKKLEGQMQEAAEVLDFELAAQIRDMVIELKN 660


>gi|322389662|ref|ZP_08063210.1| excision endonuclease subunit UvrB [Streptococcus parasanguinis
           ATCC 903]
 gi|321143661|gb|EFX39091.1| excision endonuclease subunit UvrB [Streptococcus parasanguinis
           ATCC 903]
          Length = 662

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/658 (54%), Positives = 478/658 (72%), Gaps = 10/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + +  LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDRLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++IE I E   LTGQ + +V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIERIREIEALTGQVLGDVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLKVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINARVERGERTFVTTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N    VI+YADTIT+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I     + 
Sbjct: 549 NSEGHVIMYADTITQSMQKAIDETARRRQIQMAYNEEHGIVPQTIKKEIRDLISVTKAVA 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            E+    +I+      SL++++ K  +K L+ QM  A + L+FE AA+IRD +  +K+
Sbjct: 609 KEEDKEVDIT------SLNRQERKELVKKLQGQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|62261612|gb|AAX78002.1| unknown protein [synthetic construct]
          Length = 703

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/669 (53%), Positives = 481/669 (71%), Gaps = 7/669 (1%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
           + H  ++  F + T Y P+GDQP AI  L+ GI++  + Q+LLGVTGSGKT+TMA VI+ 
Sbjct: 21  DKHMLEMNKFNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQ 80

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            Q+P +++A NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAY+  +DTYIEK+SS+
Sbjct: 81  TQKPCLILAHNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYIAASDTYIEKDSSV 140

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           NE I++MR SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + 
Sbjct: 141 NEHIEQMRLSATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTK 200

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV+ QY R D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +K+
Sbjct: 201 LVEMQYSRNDMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKL 260

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
           +++    I+ ++HYV  +      ++ IK+ELK R+   EKEG+LLEAQR+EQR  YD+E
Sbjct: 261 KSLHRATIFPSTHYVASKERKEIVIEDIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIE 320

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M++  G C  IENYSR L+GR PG PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD 
Sbjct: 321 MIQELGYCTGIENYSRLLSGRAPGYPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDL 380

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK+ L  YGFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   V+Q+IRP
Sbjct: 381 SRKSNLVNYGFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRP 439

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP V +R    QVED   EIN A  +  R+L+T LTK+M E+LTEYL E  + VRY
Sbjct: 440 TGLLDPEVFVRPVAIQVEDALSEINKAIAKEERVLITTLTKKMVENLTEYLSEHGVNVRY 499

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS++ T+ER++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SL
Sbjct: 500 LHSDIDTVERVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSL 559

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGR ARN N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +
Sbjct: 560 IQTIGRVARNQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDD 619

Query: 732 VID--PILLEDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAAR 785
           ++D  P + + A   N+ +    + +S   G       +K+L K+M   A  L FE+A  
Sbjct: 620 MLDSSPEMQKRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATT 679

Query: 786 IRDEIKRLK 794
           IRD+I  +K
Sbjct: 680 IRDKITEVK 688


>gi|227485957|ref|ZP_03916273.1| excision endonuclease subunit B [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236002|gb|EEI86017.1| excision endonuclease subunit B [Anaerococcus lactolyticus ATCC
           51172]
          Length = 651

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/656 (54%), Positives = 478/656 (72%), Gaps = 8/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++DY P GDQP AI +L +GI + +K Q+L GVTGSGKTFTMA +I+ +QRP +V+A
Sbjct: 3   FKLKSDYAPKGDQPEAIKKLSEGILAGKKHQILRGVTGSGKTFTMANIIQNVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL++EFK FFP NAVEYFVSYYDYYQPEAYV  TDTYI K+SSIN++ID+MRH
Sbjct: 63  HNKTLAYQLFTEFKEFFPDNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G    Y +++V L+ G  +  +E++  L+  QY R 
Sbjct: 123 SATMALFERRDVIIVASVSCIYGLGDPIEYKKLVVSLRPGQEISPEEVMKKLIDVQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FR  GD ++I+P+  +  A R+  FG++I++ISEF PLTG+ I  +    IY
Sbjct: 183 DVEFERGSFRARGDVLDIYPAGFDQKAIRIEFFGDEIDQISEFDPLTGKVISKITHAYIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T       A+  I++EL+ R+ E E E +LLEAQR+EQR  YD+EML+  G C 
Sbjct: 243 PASHYATTSEKTEKAIISIEKELEERIKEFESENKLLEAQRIEQRTKYDIEMLKEIGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L+ R  G  P TL +Y P+D +L VDESHV+IPQ+ GMY GD  RK  L ++
Sbjct: 303 GIENYSAHLSQRPRGSRPYTLIDYFPKDFVLMVDESHVSIPQVGGMYEGDRSRKQNLVDF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+  L   T+ VSATPG +E+++  G +VEQIIRPTGL+DP VE
Sbjct: 363 GFRLPSALDNRPLKFDEFEKLINQTVYVSATPGPYEMKKTHGELVEQIIRPTGLLDPLVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ +E++   ++G R+L+T LTK+MAEDLT+YL E++I+VRY+HS++KT+E
Sbjct: 423 VRPTANQIDDLIEEVHKTIEKGERVLVTTLTKKMAEDLTDYLMEQSIKVRYLHSDIKTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLGKFDVLVGINLLREGLDIPE  L+ ILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RSEIIRDLRLGKFDVLVGINLLREGLDIPEVSLITILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+Y DTIT S+Q AIDET RRR+ Q + NKKH I P ++K+ I E+I       
Sbjct: 543 NSEGHVIMYGDTITGSMQRAIDETERRRKIQEDFNKKHGITPTTIKKNIGEII------- 595

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  + + +     ++     L ++  +M+ AA+ L+FE AAR+RD+IK+++ +
Sbjct: 596 -QITKKAEEEEIEEFKREDIATILINMESEMYKAAEELDFERAARLRDQIKKMREN 650


>gi|323141859|ref|ZP_08076720.1| excinuclease ABC, B subunit [Phascolarctobacterium sp. YIT 12067]
 gi|322413606|gb|EFY04464.1| excinuclease ABC, B subunit [Phascolarctobacterium sp. YIT 12067]
          Length = 672

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/651 (54%), Positives = 468/651 (71%), Gaps = 2/651 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q  + P+GDQP AIA L +G+    + Q+LLG TG+GKT+T+A+VI  +++P +V+A
Sbjct: 5   FKIQAPFEPAGDQPQAIANLAEGVEQGLRTQVLLGATGTGKTYTIAQVINKVRKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SE K FFP NAVEYFVSYYDYYQPEAY+P++DTYIEK++SIN++ID++RH
Sbjct: 65  HNKTLAAQLASELKAFFPENAVEYFVSYYDYYQPEAYIPQSDTYIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G+ + Y  M++ L++G  ++++++L  LV+ QY R 
Sbjct: 125 SATSALFERKDVIIVASVSCIYGLGAPQEYYDMVLSLRLGQIIDRQKILHKLVEIQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD IE+ P+   + A R+ MF ++++ I EF  LTG+ +     + I+
Sbjct: 185 DIDFKRGTFRVRGDVIEVIPAAYGEKAVRIEMFDDEVDRIVEFDVLTGEILAQRNHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT R  L  AM  I+EEL  RL EL K GRLLEAQRLEQR  YDLEM++  G C 
Sbjct: 245 PASHYVTSRENLERAMNDIREELDERLDELNKHGRLLEAQRLEQRTNYDLEMMQEMGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  GEPP TL  Y P+D LL VDESHVT+PQI  MY GD  RK  L E+
Sbjct: 305 GIENYSRHLAGRKAGEPPFTLVNYFPKDFLLVVDESHVTLPQIRAMYAGDRSRKEMLVEH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F+E+       I VSATP  +ELEQ    +VEQIIRPTGL+DP +E
Sbjct: 365 GFRLPSAYDNRPLTFDEFQAQIKQAIYVSATPAKYELEQADN-VVEQIIRPTGLLDPQIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EIN  A  G R+L+T LTKRMAEDLTEYL +  +RVRY+HSE+ T+E
Sbjct: 424 IRPIKGQIDDLLGEINKVAAAGERVLVTTLTKRMAEDLTEYLKQAGVRVRYLHSEIATIE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EII  LR GKFDVLVGINLLREGLD+PE  L+AILDADKEGFLRS T++IQTIGRAAR
Sbjct: 484 RAEIIDSLRAGKFDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSDTAMIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S+Q AIDET RRREKQ  +N++H+I P+++ ++  ++I    + D
Sbjct: 544 NAHGRVIMYADRITDSMQRAIDETNRRREKQQAYNEEHHITPKTIYKEQRQLIKLTKVAD 603

Query: 741 AATTNISIDAQQLSL-SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                    +++L   S K+     + L ++M   A  L+FE AA +RD++
Sbjct: 604 TEEATSYGSSKKLKQKSTKELNTLARELERRMQETAKALDFEAAAELRDQL 654


>gi|303247051|ref|ZP_07333326.1| excinuclease ABC, B subunit [Desulfovibrio fructosovorans JJ]
 gi|302491477|gb|EFL51362.1| excinuclease ABC, B subunit [Desulfovibrio fructosovorans JJ]
          Length = 679

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/672 (53%), Positives = 468/672 (69%), Gaps = 18/672 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ++++Y P GDQP AI  L   +      Q+LLG TG+GKTFTMA+V+  + RPA+VM
Sbjct: 2   LFQLESEYSPQGDQPGAIEALAANLSQGVPSQVLLGATGTGKTFTMAQVVARLNRPALVM 61

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLYSEFK  FP+NAVEYFVSYYDYYQPEAY+PRTDTYIEK++SIN+ ID++R
Sbjct: 62  APNKTLAAQLYSEFKGLFPNNAVEYFVSYYDYYQPEAYLPRTDTYIEKDASINDDIDKLR 121

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT SLL R D ++V+SVSCIYG+GS + Y +M++ L++G     + ++S LV+ QY+R
Sbjct: 122 HAATHSLLTRRDVLIVASVSCIYGLGSRDYYERMVLSLEVGQKTGMEAVISRLVEIQYER 181

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RG FRV GD IE+ P++  + A R+  F +++E I E  PLTG+ + +++   I
Sbjct: 182 NDYDFHRGVFRVRGDVIELIPAYSRERAMRLEFFDDELESILETDPLTGEVLGSMQKAII 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SHYV+ R  LN A+  I+EEL++RL EL     LL AQRLE R   DLEM+E  G C
Sbjct: 242 FPASHYVSDRDNLNRAVSDIREELRLRLTELRAANDLLAAQRLEMRCMQDLEMIEELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L GR  GEPP TL +Y PED +LFVDESH+T+PQI GMY GD  RK TL +
Sbjct: 302 NGIENYSRHLDGRKAGEPPYTLLDYFPEDFILFVDESHITVPQIGGMYAGDRSRKQTLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL FEE+ C     + VSATPG WE+ + +G++VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPSALDNRPLNFEEFLCRIGQAVYVSATPGDWEVNRSEGVVVEQIIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + QV+D+  E  + A  G R+L+T LTKRMAE+L +Y     +R RY+HS++ TL
Sbjct: 422 EVRPTKGQVDDLMAECRVRADAGERVLVTTLTKRMAEELNQYFNSMGLRSRYLHSDIDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+ II+ LR G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT GRAA
Sbjct: 482 ERVAIIKALRQGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTRSLIQTFGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  +VILYADT T S+Q A+DET RRREKQ   N++  I P ++ + +  V+D +  +
Sbjct: 542 RNVGGRVILYADTETGSMQAAMDETARRREKQEAFNREAGITPSTIIKAMDSVLDSLYGQ 601

Query: 740 D-----------------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                             AA+      A    +SKK  +  ++ L ++M  AA  L FE+
Sbjct: 602 GADAAAAASVAAPGRSSRAASVREEASAYG-GMSKKALEKKIRMLEREMREAAKALEFEK 660

Query: 783 AARIRDEIKRLK 794
           AA +RD++  L+
Sbjct: 661 AAALRDQVAALR 672


>gi|311107148|ref|YP_003980001.1| excinuclease ABC subunit B [Achromobacter xylosoxidans A8]
 gi|310761837|gb|ADP17286.1| excinuclease ABC, B subunit [Achromobacter xylosoxidans A8]
          Length = 728

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/645 (56%), Positives = 465/645 (72%), Gaps = 7/645 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   Y P+GDQP AI  L +G+      Q LLGVTGSGKT+TMA VI  M RPA+V+A
Sbjct: 67  FHLYQPYPPAGDQPTAIEGLTQGVEDGLMFQTLLGVTGSGKTYTMANVIARMGRPALVLA 126

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++MR 
Sbjct: 127 PNKTLAAQLYAEMREFFPKNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRL 186

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER D I+V +VSCIYGIG+   Y  M++ L+ GD + ++E+L+ LV  QY R 
Sbjct: 187 SATKSLLERRDTIIVGTVSCIYGIGNPGDYHAMVLILRAGDQIARREILARLVAMQYTRN 246

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV G++I+IFP+   ++A R+++F ++IE +  F PLTG+  + +    +Y
Sbjct: 247 DAEFTRGVFRVRGETIDIFPAESPELALRLTLFDDEIESLELFDPLTGRIRQKLPRFTVY 306

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR T+  A++ IKEEL+ R+     +G L+EAQRLEQR  +DLEML+  G C+
Sbjct: 307 PGSHYVTPRDTVLRAIETIKEELRERVKRFVDDGHLVEAQRLEQRTRFDLEMLQELGFCK 366

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHVTI Q+ GMYRGD  RK TL +Y
Sbjct: 367 GIENYSRHLSGAAPGEPPPTLIDYLPSDALMFIDESHVTIGQLGGMYRGDRARKETLVQY 426

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATP ++E E     +VEQ++RPTGLVDP VE
Sbjct: 427 GFRLPSALDNRPLKLEEFEARMRQCVFVSATPAAYEKEHTDN-VVEQVVRPTGLVDPLVE 485

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +  ARTQV+D+  +I     Q  R+L+T LTKRMAEDLT++L E  +RVRY+HS++ T+E
Sbjct: 486 VLPARTQVDDLLGQIKARVSQAERVLVTTLTKRMAEDLTDFLSEHGVRVRYLHSDIDTVE 545

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 546 RVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 605

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N   ILYAD IT S+Q A++ET RRR KQ + N  H I  + V++ + E+ID ++   
Sbjct: 606 NLNGHAILYADRITDSMQRAMEETERRRAKQQKFNADHGITARGVQKAVRELIDGVV--- 662

Query: 741 AATTNISIDAQQLSLSKKKGKA---HLKSLRKQMHLAADNLNFEE 782
           A T + +++A   +   K  KA    +K L K M   A NL FE+
Sbjct: 663 APTQHDALEAAVPAEFLKDEKALAREIKRLEKLMMDHARNLEFEQ 707


>gi|259909036|ref|YP_002649392.1| excinuclease ABC subunit B [Erwinia pyrifoliae Ep1/96]
 gi|224964658|emb|CAX56172.1| UvrABC system protein B [Erwinia pyrifoliae Ep1/96]
 gi|283479053|emb|CAY74969.1| Excinuclease UvrABC subunit B [Erwinia pyrifoliae DSM 12163]
 gi|310767066|gb|ADP12016.1| excinuclease ABC subunit B [Erwinia sp. Ejp617]
          Length = 674

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/663 (55%), Positives = 472/663 (71%), Gaps = 9/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLNSEFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTRGMVIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A RV +F  ++E +S F PLTGQ    +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSIFDPLTGQIESVIPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKEELVQRKKVLLDNNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+ R PGE PPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSARGPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG +ELE+  G +++Q++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGHYELEKSGGEVIDQVVRPTGLLDPIVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI        R+L+TVLTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRVAINERVLVTVLTKRMAEDLTEYLTEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N++ K ILY D IT S+  AI ET RRREKQ  HN++H I PQ + +KI ++++    + 
Sbjct: 545 NLSGKAILYGDKITPSMARAIGETERRREKQQLHNEEHGIVPQGLNKKISDILELGQGLA 604

Query: 738 LEDAATTN------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
              A   N      +  D   + LS +  +  +  L  QM   A NL FE+AA++RD++ 
Sbjct: 605 KNKAKPRNMKGRSIVEDDPAYVDLSPQGLQKRIHQLEAQMQQHAQNLEFEQAAQVRDQLH 664

Query: 792 RLK 794
           +++
Sbjct: 665 QVR 667


>gi|322435092|ref|YP_004217304.1| excinuclease ABC, B subunit [Acidobacterium sp. MP5ACTX9]
 gi|321162819|gb|ADW68524.1| excinuclease ABC, B subunit [Acidobacterium sp. MP5ACTX9]
          Length = 662

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/661 (54%), Positives = 477/661 (72%), Gaps = 5/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T Y P GDQP AI +L+ G+ + EK Q+LLGVTGSGKTFTMAKVIE +QRPA+++A
Sbjct: 3   FQLTTPYTPQGDQPRAIGELVAGLAAGEKDQVLLGVTGSGKTFTMAKVIEEVQRPALILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAY+P  D +IEKE++INE++D++R 
Sbjct: 63  HNKTLAAQLYHEFKQFFPNNAVEYFVSYYDYYQPEAYIPSGDLFIEKEATINEELDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D I+VSSVSCIYG+GS E+Y  M++ L+ G  ++++++   LV+  Y+R 
Sbjct: 123 SATRSLFERRDAIIVSSVSCIYGLGSPEAYYGMLLLLEKGQKIKREDITRRLVEILYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD IE+FP++ E+ A+R+ +FG++I+ +S+  PL G   +    + IY
Sbjct: 183 DVDFRRGTFRVRGDIIEVFPTYDEN-AYRIELFGDEIDGLSQIDPLFGTVRQKYSRLPIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV        A   I  E++    ELE  GRL+E+QR+ QR  +DLEM+++ G C 
Sbjct: 242 PKSHYVVQPERKKAASDSILAEMEWWEKELENTGRLVESQRIHQRTRFDLEMIKSVGYCH 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +GR PGEPPPTL +Y P D LLF+DESHVT+PQ+ GM+ GD  RK  L +Y
Sbjct: 302 GIENYSRHFSGRLPGEPPPTLLDYFPRDYLLFIDESHVTVPQLHGMWHGDRSRKQNLVDY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+F+E+       I VSATPG +EL +  G++VEQIIRPTGLVDP +E
Sbjct: 362 GFRLPSAMDNRPLKFDEFEGRTGQIIYVSATPGPYELTKAAGVVVEQIIRPTGLVDPQIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EI + A    R+L+T LTKRM+EDL  Y  E  +R RYMHSE++TLE
Sbjct: 422 IRPVKGQIDDLLAEIRIRAANDQRVLVTTLTKRMSEDLANYYTEVGVRCRYMHSEIETLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI ++RDLR G++DVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 482 RIRLLRDLRKGEYDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSQGSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++  + ILYAD +T S+Q AIDET RRR KQ  +N++H I P++V   I + +  IL  D
Sbjct: 542 HLEGRAILYADKMTDSMQRAIDETDRRRTKQEAYNEEHGITPRTVIRSIDDSLATILKAD 601

Query: 741 AATTNISIDAQQLSLSKKKGK--AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
            A  +++ D Q +     + +   ++K+L   M  AA    FE+AA++RD ++ L++  +
Sbjct: 602 YA--DLTEDTQGMPDFNTQAELDTYIKNLESDMREAAKKFEFEKAAKLRDTVRELRTKEF 659

Query: 799 F 799
            
Sbjct: 660 L 660


>gi|332678482|gb|AEE87611.1| Excinuclease ABC subunit B [Francisella cf. novicida Fx1]
          Length = 668

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/660 (54%), Positives = 478/660 (72%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T Y P+GDQP AI  L+ GI++  + Q+LLGVTGSGKT+TMA VI+  Q+P +++A
Sbjct: 4   FNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK +F  NAVEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++MR 
Sbjct: 64  HNKTLAAQLYSEFKQYFRDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY R 
Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +KI+++    I+
Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKIKSLHRATIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            ++HYV  +      ++ IK+ELK R+   EKEG+LLEAQR+EQR  YD+EM++  G C 
Sbjct: 244 PSTHYVASKERKEIVIEEIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELGYCT 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RK+ L  Y
Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   V+Q+IRPTGL+DP V 
Sbjct: 364 GFRLPSALDNRPLKFNEFEKLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDPEVF 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QVED   EIN A  +  R+L+T LTK+MAE+LTEYL E  + VRY+HS++ T+E
Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERVLITTLTKKMAENLTEYLSEHGVNVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR AR
Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738
           N N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D  P + 
Sbjct: 543 NQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSPEMQ 602

Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + A   N+ +    + +S   G       +K+L K+M   A  L FE+A  IRD+I  +K
Sbjct: 603 KRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKITEIK 662


>gi|256826976|ref|YP_003150935.1| Excinuclease ABC subunit B [Cryptobacterium curtum DSM 15641]
 gi|256583119|gb|ACU94253.1| Excinuclease ABC subunit B [Cryptobacterium curtum DSM 15641]
          Length = 708

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/655 (54%), Positives = 479/655 (73%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + PSGDQPAAI  L +G+    + Q LLGVTGSGKTFTMAK IE++QRP +V+ 
Sbjct: 26  FRVVAPFEPSGDQPAAIRALAQGVQDGLRYQTLLGVTGSGKTFTMAKTIESLQRPTLVLE 85

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ+ +E + FFP NAV YFVSYYDYYQPEAYVP TDT+IEK++SINE+++++RH
Sbjct: 86  PNKTLAAQVAAELREFFPDNAVVYFVSYYDYYQPEAYVPSTDTFIEKDASINEEVEKLRH 145

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R D IVV+SVSCIYGIGS   Y+ M V       +++ +++  L+  QY R 
Sbjct: 146 AATSALLSRRDVIVVASVSCIYGIGSPMDYAGMAVFADKDKPIDRDQMIHGLIDIQYDRN 205

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGTFRV GD++++FP +  D   R+  +G++IE I+E   +TG+ + + E + I+
Sbjct: 206 DYELTRGTFRVRGDALDVFPPY-ADNPIRLEFWGDEIESITEIDNVTGEVLNSYEALPIW 264

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +P ++ A+K I+EEL+ RL + ++EG+LLEAQRLE R++YDLEM+ET G C 
Sbjct: 265 PASHYVTAKPKMDHAIKTIREELRERLAQFKEEGKLLEAQRLEMRVSYDLEMMETMGFCS 324

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR+PGEPP TL +Y P D +  VDESHVT+PQ+ GM+ GD  RK TLAE+
Sbjct: 325 GIENYSRHLDGRSPGEPPYTLLDYFPRDFICIVDESHVTVPQVRGMHEGDRSRKVTLAEH 384

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPLRF+E+       I VSATPG +E    Q   VEQIIRPTGL+DP + 
Sbjct: 385 GFRLPSCLDNRPLRFDEFEQRVGQFIYVSATPGDYENRVSQKT-VEQIIRPTGLLDPEII 443

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   +Q++D+ DE    AQ   R L+T LTK+MAEDLT++L +++I+ RYMHS++ TLE
Sbjct: 444 VRPTASQIDDIIDEARARAQNHERTLITTLTKKMAEDLTDHLLDQSIKARYMHSDIGTLE 503

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+R+LR GKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR   SLIQTIGRAAR
Sbjct: 504 RVDILRELRQGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRHYRSLIQTIGRAAR 563

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD  T S+ LAI ET RRR  Q+ +N+KH I PQ++K+ I +++D +  E 
Sbjct: 564 NAHGQVIMYADKRTDSMDLAITETQRRRALQMAYNEKHGITPQTIKKDINDIMDYVQQEA 623

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              +   I+ +  SLS+ +    + ++ + M  A+ +L+F+ AA +RD+I RLKS
Sbjct: 624 GDVSAEQINQELASLSRGEVMRVVAAMEEDMRQASADLDFDRAASLRDQIVRLKS 678


>gi|317471948|ref|ZP_07931281.1| excinuclease ABC [Anaerostipes sp. 3_2_56FAA]
 gi|316900585|gb|EFV22566.1| excinuclease ABC [Anaerostipes sp. 3_2_56FAA]
          Length = 661

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/654 (53%), Positives = 479/654 (73%), Gaps = 4/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI QL+ G     + + LLGVTGSGKTFTMA VI+ + +P +++A
Sbjct: 4   FELVSEFEPTGDQPEAIRQLVSGFKQGNQFETLLGVTGSGKTFTMANVIQELNKPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+SS+N++ID++RH
Sbjct: 64  HNKTLAAQLYSEFKAFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSVNDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L+ER D IVVSSVSCIYGIGS E+YS+M++ L+ G   ++ +++  L+  QY R 
Sbjct: 124 SATAALIERKDVIVVSSVSCIYGIGSKENYSEMMISLRPGMEKDRDQVIDELINIQYVRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGTFRV GD +EI P    + A RV  FG++I+ I EF  LTG+  R++  + I+
Sbjct: 184 ELDFKRGTFRVKGDVLEILPVSTFEEAVRVEFFGDEIDRIVEFDVLTGEVKRSINFLAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +  A+  IK+EL  R+   ++  +L+EAQR+ +R  +D+EML  TG C 
Sbjct: 244 PASHYVVPQEQIEQAIVNIKQELAERVKYFQENDQLIEAQRIAERTNFDIEMLRETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PGEPP TL ++  +D L+ VDESH+T+PQI GMY GD  RK+TL ++
Sbjct: 304 GIENYSRHLTGGKPGEPPSTLIDFFGDDFLVIVDESHITVPQIGGMYSGDQSRKSTLVDF 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F E+       + VSATP  +E E  + +  EQIIRPTGL+DPP++
Sbjct: 364 GFRLPSAKDNRPLEFSEFESKIDQMMFVSATPSKYEAEH-ELLRAEQIIRPTGLLDPPID 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  E++   +QG ++L+T LTKRMAE+LT+Y+ E  IRV+Y+HS++ TLE
Sbjct: 423 VRPVKGQIDDLLSEVHKETEQGHKVLVTTLTKRMAEELTDYMREVGIRVKYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RDLR+  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSL+QT+GRAAR
Sbjct: 483 RTEIVRDLRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLVQTVGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S++ AI ET RRR  Q ++NK+H I PQ++++ I ++I     E+
Sbjct: 543 NSEGHVIMYADNMTDSMEAAISETNRRRAIQDQYNKEHGITPQTIQKDIRDLIKISDEEE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A  +N   +    S++KK+ K +++ L K+M+ AA  LNFEEAA +RDE+K  K
Sbjct: 603 AEQSN---EKDIESMNKKELKENIERLTKKMNRAAAELNFEEAAALRDELKEYK 653


>gi|306831686|ref|ZP_07464843.1| excision endonuclease subunit UvrB [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325978625|ref|YP_004288341.1| excinuclease ABC, B subunit [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|304426111|gb|EFM29226.1| excision endonuclease subunit UvrB [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325178553|emb|CBZ48597.1| excinuclease ABC, B subunit [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 663

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/656 (54%), Positives = 478/656 (72%), Gaps = 5/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPEAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGEVEHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  I EE++ ++ + E EG+L+EAQR+ QR  YD+EML   G   
Sbjct: 250 PATHFMTNEEHMEHAIHNILEEMEEQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ VDESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMVDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +ELEQ    +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYELEQTD-TVVEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN  A++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINSRAEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT+S+Q A+DET RRRE Q+ +N++H I PQ++K+ I    D I +  
Sbjct: 549 NSEGHVIMYADKITESMQKAMDETARRREIQMRYNEEHGIIPQTIKKDIR---DLIAISK 605

Query: 741 AATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           ++ T+I+ D     +++K + +  +K L+KQM  AA+ L+FE AA++RD +  LK+
Sbjct: 606 SSDTDIAEDVPDYNAMTKAERQETIKKLQKQMQEAAEMLDFELAAQLRDMVLELKA 661


>gi|238020774|ref|ZP_04601200.1| hypothetical protein GCWU000324_00664 [Kingella oralis ATCC 51147]
 gi|237867754|gb|EEP68760.1| hypothetical protein GCWU000324_00664 [Kingella oralis ATCC 51147]
          Length = 677

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/665 (53%), Positives = 476/665 (71%), Gaps = 7/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLNQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIITTLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G     V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHHRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPSNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P TI VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  E+
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEE 609

Query: 741 AATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      +  +      +++     +  L K M  AA +L FEEAA IRD I+ +K
Sbjct: 610 DGGKGRLKGKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVIRDRIRGIK 669

Query: 795 SSPYF 799
               F
Sbjct: 670 EGLLF 674


>gi|300312456|ref|YP_003776548.1| excinuclease ABC subunit B [Herbaspirillum seropedicae SmR1]
 gi|300075241|gb|ADJ64640.1| excinuclease ABC subunit B (SOS response excision nuclease DNA
           repair ATP-binding) protein [Herbaspirillum seropedicae
           SmR1]
          Length = 693

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/669 (53%), Positives = 479/669 (71%), Gaps = 8/669 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    F++   + P+GDQPAAI +L++G++     Q LLGVTGSGKT+TMA  
Sbjct: 12  DESKFVTFPDSPFKLYQVFPPAGDQPAAIDKLVEGVNDGLFYQTLLGVTGSGKTYTMANT 71

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  + RPAIV APNK LAAQLYSEF+ FFPHNAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 72  IARLGRPAIVFAPNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR S T+SL+ER D ++V++VS IYGIG+   Y QMI+ L+  D V Q+++
Sbjct: 132 SSINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTLRAKDKVSQRDV 191

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L++ QY R ++   RGTFRV GD+I++FP+   ++A R+  F ++I+ +  F PLTG
Sbjct: 192 IARLIQMQYTRNEVDFGRGTFRVRGDTIDVFPAEHAELAVRIETFDDEIDSLQLFDPLTG 251

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    IY  SHYVTPR T+  A++ IKEEL  RL    KE +L+E QRLEQR  +
Sbjct: 252 RVRQKIPRFTIYPGSHYVTPRSTVLRAIETIKEELAERLEFFRKENKLIEEQRLEQRTRF 311

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G  + IENYSR+L+G  PG+PPPTL +Y+P+D+++F+DESHV I Q++GMY 
Sbjct: 312 DIEMMTEIGFTKGIENYSRHLSGAKPGDPPPTLVDYLPKDAIMFLDESHVLIGQLNGMYN 371

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L +YGFRLPS +DNRPL+F+E+      TI VSATP  +E       +VEQ+
Sbjct: 372 GDRARKVNLVDYGFRLPSALDNRPLKFDEFEKKMRQTIFVSATPADYENTHADQ-VVEQV 430

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP + +R A TQV+D+  EIN    +  R+L+T LTKRMAE LTE+L +  I+
Sbjct: 431 VRPTGLVDPIIAVRPATTQVDDLMQEINDRIAKDERVLVTTLTKRMAEQLTEFLSDNGIK 490

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDV+VGINLLREGLDIPE  LVAILDADKEGFLRS+
Sbjct: 491 VRYLHSDIDTVERVEIIRDLRLGTFDVVVGINLLREGLDIPEVSLVAILDADKEGFLRSE 550

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARN+N   ILY D +T S+  AI ET RRR KQL  N  + I P  +K++
Sbjct: 551 RSLIQTIGRAARNLNGMAILYGDVVTDSMHKAIGETERRRAKQLAFNAANGIVPTGIKKE 610

Query: 729 IMEVIDPILLEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           I E+ID +     A T + +  ++    S+S+K+    +K L KQM   A NL FE+AA 
Sbjct: 611 IRELIDGVFNPAQARTELLVAEEKKNYESMSEKQISKEIKRLEKQMQEHAKNLEFEKAAA 670

Query: 786 IRDEIKRLK 794
            RD++  LK
Sbjct: 671 ARDQLHLLK 679


>gi|167765635|ref|ZP_02437688.1| hypothetical protein CLOSS21_00119 [Clostridium sp. SS2/1]
 gi|167712681|gb|EDS23260.1| hypothetical protein CLOSS21_00119 [Clostridium sp. SS2/1]
          Length = 662

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/664 (54%), Positives = 480/664 (72%), Gaps = 5/664 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L KG     + + LLGVTGSGKTFTMA +I+ + +P +++A
Sbjct: 4   FELVSEYEPTGDQPQAIEKLTKGFQDGNQFETLLGVTGSGKTFTMANIIQNLNKPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+SS+N++ID++RH
Sbjct: 64  HNKTLAAQLYSEFKAFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSVNDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L+ER D IVVSSVSCIYGIGS ESYS+M++ L+ G   ++ E++  L+  QY R 
Sbjct: 124 SATAALIERKDVIVVSSVSCIYGIGSKESYSEMMISLRPGMIKDRDEVIDDLINIQYVRS 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGTFRV GD +EI P    + A RV  FG++I+ I EF  LTG+  R++    I+
Sbjct: 184 ELDFKRGTFRVKGDVLEILPVSTFEDAVRVEFFGDEIDRIVEFDVLTGEVKRSLNFAAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +  A+K IKEEL  ++   ++  +L+EAQR+ +R  +D+EML  TG C 
Sbjct: 244 PASHYVVPQEQIERAIKGIKEELAEQVTYFKEHDQLIEAQRIAERTNFDIEMLRETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L G  PG+PP TL ++  +D L+ +DESH+T+PQI GMY GD  RK+TL ++
Sbjct: 304 GIENYSRHLAGLEPGQPPSTLIDFFGDDFLMIIDESHITVPQIGGMYAGDQSRKSTLVDF 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F E+       + VSATPG +E E+ + +  EQIIRPTGL+DP + 
Sbjct: 364 GFRLPSAKDNRPLEFGEFEQKIDQMLFVSATPGKYE-EEHELLRAEQIIRPTGLLDPAIN 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+    +G ++L+T LTKRMAE+LT+Y+ E  IRV+Y+HS++ TLE
Sbjct: 423 VRPVEGQIDDLLGEIHKETDKGNKVLVTTLTKRMAEELTDYMREVGIRVKYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLR+G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSL+QTIGRAAR
Sbjct: 483 RIEIVRDLRMGVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLVQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S+  AI ET RRRE Q E+NK+H I PQ++K+ I ++I      +
Sbjct: 543 NSEGHVIMYADHMTDSMHAAITETERRREIQDEYNKEHGITPQTIKKDIRDLIKISDEHE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
             T     D +  S+SKK+ K  ++ L K+M+ AA  LNFE AA++RDE+K  K +  +Q
Sbjct: 603 EETGGYEKDME--SMSKKELKEVIERLSKKMNQAAAELNFELAAQLRDELKEFKIA--YQ 658

Query: 801 GLDD 804
             DD
Sbjct: 659 EYDD 662


>gi|7766819|pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
          Length = 658

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/656 (56%), Positives = 475/656 (72%), Gaps = 5/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y P GDQP AIA+L+ G+    K Q LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 5   FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI-SEFYPLTGQKIRNVETIKI 379
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I +E   LTG+ +   E + I
Sbjct: 185 DIDF-RGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIRAEVDALTGKVLGEREHVAI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    +  A++ I++EL+ RL EL  +G+LLEAQRLEQR  YDLEM+   G C
Sbjct: 244 FPASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L  R PG  P TL +Y P+D L+ VDESHVT+PQ+ GMY GD  RK  L +
Sbjct: 304 SGIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVD 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL FEE+       I VSATPG +ELE   G+ VEQIIRPTGL+DP +
Sbjct: 364 HGFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPGV-VEQIIRPTGLLDPTI 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R  + Q++D+  EI    ++  R L+T LTK+MAEDLT+YL E  I+V Y+HSE+KTL
Sbjct: 423 DVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTL 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 483 ERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VI+YADTITKS+++AI ET RRR  Q E+N+KH I P++VK++I +VI      
Sbjct: 543 RNANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYA- 601

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            A  T +       +++K++ +  +++L  +M  AA  L+FE AA++RD I  LK+
Sbjct: 602 -AEETEMYEAKPAAAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKA 656


>gi|134095424|ref|YP_001100499.1| excinuclease ABC subunit B [Herminiimonas arsenicoxydans]
 gi|133739327|emb|CAL62377.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
           [Herminiimonas arsenicoxydans]
          Length = 694

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/669 (53%), Positives = 481/669 (71%), Gaps = 8/669 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + SK +TF    F++   + P+GDQP AIA+L++GI      Q LLGVTGSGKT+T+A V
Sbjct: 12  DESKIVTFPDSPFRLYQPFPPAGDQPTAIAKLVEGIEDGLFYQTLLGVTGSGKTYTVANV 71

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  M RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 72  IARMGRPAIVFAPNKTLAAQLYSEFREFFPQNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR S T+SL+ER D +++++VS IYGIG+   Y QMI+ L+  D V Q+++
Sbjct: 132 SSINEHIEQMRLSCTKSLMERRDVVIIATVSAIYGIGNPSEYHQMILTLRAKDKVSQRDV 191

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R ++   RGTFRV GD+I+IFP+   ++A R+ MF ++IE +  F PLTG
Sbjct: 192 IARLIAMQYTRNEVDFGRGTFRVRGDTIDIFPAEHAELAIRLEMFDDEIESLQLFDPLTG 251

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y  SHYVTPR T+  A+  IK+EL+ RL    KE +L+E QRLEQR  +
Sbjct: 252 RVKQKIPRFTVYPGSHYVTPRATVLRAIDTIKDELRERLEFFRKENKLIEEQRLEQRTRF 311

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEM++  G  + IENYSR+L+G   G+PPPTL +Y+P+D+L+F+DESHV + Q++GMY 
Sbjct: 312 DLEMMQEIGFTKGIENYSRHLSGAKAGDPPPTLVDYLPQDALMFMDESHVLMGQLNGMYN 371

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L +YGFRLPS +DNRPLRF+E+       + VSATP  +E       +VEQ+
Sbjct: 372 GDRARKTNLVDYGFRLPSALDNRPLRFDEFEGKMRQMVFVSATPADYENAHADQ-VVEQV 430

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP + +R A TQV+D+  EI    ++  R+L+T LTKRM+E LTE+L +  I+
Sbjct: 431 VRPTGLVDPLISVRPASTQVDDLMTEITDRVKKHERVLVTTLTKRMSEQLTEFLSDNGIK 490

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+
Sbjct: 491 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 550

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARN+N   ILY D +T S++ AIDET RRR KQ+  N  +NI P  +K+ 
Sbjct: 551 RSLIQTIGRAARNLNGMAILYGDKVTDSMRRAIDETERRRAKQMAFNTANNITPVGIKKH 610

Query: 729 IMEVIDPILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           I E+ID +  +  A    +     A+  ++S+K+    +K L KQM   A NL FE+AA+
Sbjct: 611 IRELIDGVYSQQDAREEFNAAQEHAKYEAMSEKQVSKEIKRLEKQMLGHAKNLEFEKAAQ 670

Query: 786 IRDEIKRLK 794
           +RD+++ LK
Sbjct: 671 VRDQLRILK 679


>gi|56708262|ref|YP_170158.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670733|ref|YP_667290.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457382|ref|ZP_03665855.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370747|ref|ZP_04986752.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875082|ref|ZP_05247792.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|81820767|sp|Q5NFN4|UVRB_FRATT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56604754|emb|CAG45832.1| DNA excision repair enzyme, subunit B (UvrABC system protein B)
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110321066|emb|CAL09215.1| DNA excision repair enzyme, subunit B (UvrABC system protein B)
           [Francisella tularensis subsp. tularensis FSC198]
 gi|151568990|gb|EDN34644.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841081|gb|EET19517.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159489|gb|ADA78880.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 668

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/660 (53%), Positives = 477/660 (72%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T Y P+GDQP AI  L+ GI++  + Q+LLGVTGSGKT+TMA VI+  Q+P +++A
Sbjct: 4   FNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAY+  +DTYIEK+SS+NE I++MR 
Sbjct: 64  HNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYIAASDTYIEKDSSVNEHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY R 
Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +K++++    I+
Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRATIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            ++HYV  +      ++ IK+ELK R+   EKEG+LLEAQR+EQR  YD+EM++  G C 
Sbjct: 244 PSTHYVASKERKEIVIEDIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELGYCT 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR PG PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RK+ L  Y
Sbjct: 304 GIENYSRLLSGRAPGYPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   V+Q+IRPTGL+DP V 
Sbjct: 364 GFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDPEVF 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QVED   EIN A  +  R+L+T LTK+M E+LTEYL E  + VRY+HS++ T+E
Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERVLITTLTKKMVENLTEYLSEHGVNVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR AR
Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRVAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738
           N N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D  P + 
Sbjct: 543 NQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSPEMQ 602

Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + A   N+ +    + +S   G       +K+L K+M   A  L FE+A  IRD+I  +K
Sbjct: 603 KRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKITEVK 662


>gi|149911642|ref|ZP_01900252.1| Putative excinuclease ABC subunit B [Moritella sp. PE36]
 gi|149805266|gb|EDM65281.1| Putative excinuclease ABC subunit B [Moritella sp. PE36]
          Length = 664

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/664 (52%), Positives = 480/664 (72%), Gaps = 17/664 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + ++Y PSGDQP AI +L+   ++    Q LLGVTGSGKT+T+A +I  + RP ++M
Sbjct: 4   LFDLCSEYTPSGDQPQAIEKLVDSFNAGVACQTLLGVTGSGKTYTVANMIAQLNRPTLLM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY+E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++++N  I++MR
Sbjct: 64  APNKTLAAQLYAEMKGFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDAAVNAHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER D I+++SVS IYG+G  +SY +M++ + +G+ + Q+ ++  L + QY R
Sbjct: 124 LSATKALLERRDVILIASVSAIYGLGDPKSYLKMMLHVSVGEVISQRSIIRRLAELQYIR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+   R TFRV G+ I+I+P+  +  A R+ MF ++IE IS F PLTG   + VE   I
Sbjct: 184 NDMDFKRSTFRVRGEVIDIYPAESDKHAVRIEMFDDEIERISYFDPLTGAVEKTVERATI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  + +A+++IK EL  R  +L    +L+E QR+ QR+ +D+EM++  G C
Sbjct: 244 YPKTHYVTPREKILSAIEHIKVELSERKKQLLSANKLIEEQRVSQRVQFDIEMMQELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR PG+ PPTL +Y+P+D +L +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 304 SGIENYSRYLSGRVPGDAPPTLLDYLPDDGILVIDESHVTVPQIGAMYKGDRSRKETLVE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+  + P T+ VSATP  +EL++C+G IV+Q++RPTGL+DP +
Sbjct: 364 FGFRLPSALDNRPLKFEEFESISPQTLYVSATPSQYELDRCEGEIVQQLVRPTGLLDPII 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EIN+   +G R+L T LTKRM+EDL EYL +  ++VRY+HS++ T+
Sbjct: 424 EVRPVDTQVDDLLSEINIRVAKGERVLATTLTKRMSEDLAEYLADHGVKVRYLHSDIDTV 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 484 ERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----- 734
           RN+  K ILYA+ ITK++  AI ET RRR  Q EHN KH I P+ +K+K+ + ++     
Sbjct: 544 RNLEGKAILYANRITKAMDKAISETDRRRALQHEHNVKHGITPKGLKKKVGDALNIGRTP 603

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                 + E  AT  +   A   +LSK+     +  L +QM+  A +L FE+A   RD++
Sbjct: 604 EQQMMFIAEQKATYAMFTPA---ALSKE-----IVRLEEQMYKYAQDLEFEKAGETRDKV 655

Query: 791 KRLK 794
            +L+
Sbjct: 656 AKLR 659


>gi|312866754|ref|ZP_07726968.1| excinuclease ABC, B subunit [Streptococcus parasanguinis F0405]
 gi|311097835|gb|EFQ56065.1| excinuclease ABC, B subunit [Streptococcus parasanguinis F0405]
          Length = 662

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/658 (54%), Positives = 479/658 (72%), Gaps = 10/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++IE I E   LTGQ + +V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIERIREIEALTGQVLGDVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLKVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINARVERGERTFVTTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I     + 
Sbjct: 549 NSEGHVIMYADTMTQSMQKAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLISVTKAVA 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            E+    +I+      SL++++ K  +K L+ QM  A + L+FE AA+IRD +  +K+
Sbjct: 609 KEEDKEVDIT------SLNRQERKELVKKLQGQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|169833714|ref|YP_001694670.1| excinuclease ABC subunit B [Streptococcus pneumoniae Hungary19A-6]
 gi|238688299|sp|B1IC35|UVRB_STRPI RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|168996216|gb|ACA36828.1| excinuclease ABC, B subunit [Streptococcus pneumoniae Hungary19A-6]
          Length = 662

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/663 (54%), Positives = 476/663 (71%), Gaps = 5/663 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           NH  D   F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  +
Sbjct: 3   NHITD-NQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKV 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N
Sbjct: 62  NKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           ++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ L
Sbjct: 122 DEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDL 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ + 
Sbjct: 182 VDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLG 241

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V+ + I+  +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EM
Sbjct: 242 EVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEM 301

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G    +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+TI QI GMY GD  
Sbjct: 302 LREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDRS 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  YGFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPT
Sbjct: 362 RKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP VE+R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YM
Sbjct: 421 GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LI
Sbjct: 481 HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K+   E+
Sbjct: 541 QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKK---EI 597

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            D I +  A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  
Sbjct: 598 RDLIAVTKAVAKEEDKEVDITSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLE 657

Query: 793 LKS 795
           +K+
Sbjct: 658 VKA 660


>gi|225874345|ref|YP_002755804.1| excinuclease ABC, B subunit [Acidobacterium capsulatum ATCC 51196]
 gi|225794026|gb|ACO34116.1| excinuclease ABC, B subunit [Acidobacterium capsulatum ATCC 51196]
          Length = 664

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/659 (54%), Positives = 473/659 (71%), Gaps = 1/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y P GDQ  AI +L+ G+ S E+ Q+LLGVTGSGKTFTMAKVIE + RPA+++A
Sbjct: 5   FQLVSEYQPKGDQVRAIRELVGGVASGEQHQVLLGVTGSGKTFTMAKVIEELNRPALILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+ EFK FFP+NAVEYFVSYYDYYQPEAY+P  D YIEKE++INE++D++R 
Sbjct: 65  HNKTLAAQLFHEFKQFFPNNAVEYFVSYYDYYQPEAYIPAGDLYIEKEATINEELDKLRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER DCI+V+SVSCIYG+GS E+Y  M++ L+ G  + ++++   LV+  Y+R 
Sbjct: 125 SATRSLFERRDCIIVASVSCIYGLGSPEAYYGMLLLLEKGQKIRREDITRRLVEILYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD IE++P++ E+ A+R+ +FG++I+ +++  PL G   +    + IY
Sbjct: 185 DADFRRGTFRVRGDVIEVYPTYDEN-AFRIELFGDEIDSLAQIDPLFGTVKQKYSRLPIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV       +AM  I EEL     ELE +GR++EAQR+ QR  +DLEM+++ G C 
Sbjct: 244 PKSHYVVMPERKKSAMDSILEELGTWEKELEAQGRMVEAQRVHQRTRFDLEMIKSMGYCH 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +GR PGEPPPTL +Y P D LLF+DESHVT+PQ+ GM+ GD  RK  L +Y
Sbjct: 304 GIENYSRHFSGRLPGEPPPTLLDYFPRDFLLFIDESHVTVPQLHGMWHGDRSRKQNLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+FEE+       + VSATPG++EL +  G++VEQIIRPTGL+DP VE
Sbjct: 364 GFRLPSAMDNRPLKFEEFEARTHQLVYVSATPGAYELTKSAGVVVEQIIRPTGLIDPEVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  R Q++D+  EI     +G R+L+T LTKRMAEDL+ Y  E  +R RYMHSE++TLE
Sbjct: 424 IRPIRGQIDDLLAEIRDRVAKGERVLVTTLTKRMAEDLSGYYSEVGVRCRYMHSEIETLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++++RDLR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 484 RVKLLRDLRKGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSAGSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN + ILYAD IT S++ A+DET RRR  Q  +N++H I P S+       +  IL  +
Sbjct: 544 NVNGRAILYADRITDSMRQAMDETDRRRTVQRAYNEEHGITPTSIIRSADMSLAKILKAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
            A      +      S+++   ++  L  +M  AA    FE+AA++RD IK L+S  + 
Sbjct: 604 YADLEEESEEMPEFSSQEQLDTYILKLETEMREAAKKFEFEKAAKLRDTIKDLRSKEFL 662


>gi|269218447|ref|ZP_06162301.1| excinuclease ABC subunit B [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211558|gb|EEZ77898.1| excinuclease ABC subunit B [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 695

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/672 (53%), Positives = 481/672 (71%), Gaps = 19/672 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y PSGDQPAAIA+L + I + EK  +LLG TG+GK+ T A +IE +QRP +++ 
Sbjct: 16  FQVVSQYAPSGDQPAAIAELAERIEAGEKDVVLLGATGTGKSATTAWLIEKVQRPTLIIE 75

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ+ +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH
Sbjct: 76  PNKTLAAQMAAEFRELMPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 135

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ + Y   +VQL++G  +++ EL+   V  QY R 
Sbjct: 136 SATNSLLTRRDTVVVSSVSCIYGLGTPQEYVARMVQLEVGQRIDRDELMRRFVGMQYTRN 195

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E++A R+  FG++I+ I+  +PLTG  IR V+   ++
Sbjct: 196 DVAFARGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDAITLLHPLTGTVIRRVDRAHVF 254

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A++ I+ EL  RL  L+ + ++LEAQRL+ R  YD+EM+   GSC 
Sbjct: 255 PASHYVAGPERMARALEGIEAELAERLDVLQTQNKMLEAQRLQMRTNYDVEMMRNIGSCA 314

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL VDESHVT+PQI  MY GD  RK TL +Y
Sbjct: 315 GIENYSRHIDGRGPGTPPNTLLDYFPEDFLLIVDESHVTVPQIGAMYEGDMSRKRTLVDY 374

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+F E+      T+ +SATPG +E+E   G +VEQIIRPTGLVDP V 
Sbjct: 375 GFRLPSAMDNRPLKFPEFLERVGQTVYLSATPGKYEMEHSDG-VVEQIIRPTGLVDPEVV 433

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+  +I    ++  R+L+T LTK+MAEDLT+YL ER+I+V Y+HS+V TL 
Sbjct: 434 VKPTEDQIDDLLGQIKERVERNERVLVTTLTKKMAEDLTDYLAERDIKVEYLHSDVDTLR 493

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LRLG FDVLVGINLLREGLD+PE  LVAILDADK+GFLRS TSLIQTIGRAAR
Sbjct: 494 RVELLRELRLGTFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSTTSLIQTIGRAAR 553

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +VI+YAD+IT +++ AIDET RRR KQ+ +N++  I+PQ +++KI +V D +  ED
Sbjct: 554 NVSGQVIMYADSITPNMREAIDETNRRRAKQMAYNEERGIDPQPLRKKIADVTDMLARED 613

Query: 741 AATTNI-------------SIDAQQLSLSKKKGKAHLKSLRKQ----MHLAADNLNFEEA 783
             T  +                A     +  +G+  LK L ++    MH AA +L FE A
Sbjct: 614 IDTAALLEGGYRKERAASPEAPATLRESAAAEGERDLKGLIEEMTELMHEAAASLKFELA 673

Query: 784 ARIRDEIKRLKS 795
           AR RDEIK LKS
Sbjct: 674 ARYRDEIKGLKS 685


>gi|319946954|ref|ZP_08021188.1| excision endonuclease subunit UvrB [Streptococcus australis ATCC
           700641]
 gi|319747002|gb|EFV99261.1| excision endonuclease subunit UvrB [Streptococcus australis ATCC
           700641]
          Length = 662

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/658 (54%), Positives = 478/658 (72%), Gaps = 10/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLKVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINARVERGERTFVTTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I     + 
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRQIQMAYNEEHGIVPQTIKKEIRDLISVTKVVA 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            E+    +I+      SL++++ K  +K L+ QM  A + L+FE AA+IRD +  +K+
Sbjct: 609 KEEDKEVDIT------SLNRQERKELVKKLQGQMQAAVEVLDFELAAQIRDMMLEVKA 660


>gi|332074849|gb|EGI85321.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA41301]
          Length = 662

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/663 (54%), Positives = 480/663 (72%), Gaps = 5/663 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           NH  D   F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  +
Sbjct: 3   NHITD-NQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKV 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N
Sbjct: 62  NKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           ++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL++L
Sbjct: 122 DEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNNL 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ + 
Sbjct: 182 VDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLG 241

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V+ + I+  +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EM
Sbjct: 242 EVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEM 301

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G    +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+TI QI GMY GD  
Sbjct: 302 LREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDRS 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  YGFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPT
Sbjct: 362 RKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP VE+R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YM
Sbjct: 421 GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LI
Sbjct: 481 HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++
Sbjct: 541 QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL 600

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           I  +    A   +  +D    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  
Sbjct: 601 I-AVTKAVAKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLE 657

Query: 793 LKS 795
           +K+
Sbjct: 658 VKA 660


>gi|323351407|ref|ZP_08087063.1| excision endonuclease subunit UvrB [Streptococcus sanguinis VMC66]
 gi|322122631|gb|EFX94342.1| excision endonuclease subunit UvrB [Streptococcus sanguinis VMC66]
          Length = 662

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADTIT+S+QLAIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTITQSMQLAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMVKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|299535981|ref|ZP_07049300.1| excinuclease ABC subunit B [Lysinibacillus fusiformis ZC1]
 gi|298728586|gb|EFI69142.1| excinuclease ABC subunit B [Lysinibacillus fusiformis ZC1]
          Length = 659

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/654 (54%), Positives = 474/654 (72%), Gaps = 1/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q  Y P+GDQP AIA+L++G+ + ++ Q LLG TG+GKTFT++ VI+ +++P ++MA
Sbjct: 4   FDLQAPYQPNGDQPQAIAELVEGVKAGKRHQTLLGATGTGKTFTISNVIQQVKKPTLIMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++ID++RH
Sbjct: 64  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS E Y +M+V ++ G  +E+ +LL  LV  QY+R 
Sbjct: 124 SATSALFEREDVIIIASVSCIYGLGSPEEYREMVVSIRTGMEIERNQLLRKLVDVQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ + + E + I+
Sbjct: 184 DVSFTRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEILSDREHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL  L  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 244 PASHFVTREEKMRKAIENIEKELEERLALLRAEDKLLEAQRLEQRTRYDLEMMREMGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED LL VDESHVT+PQ+ GMY GD  RK  L E+
Sbjct: 304 GIENYSRHLTLREAGATPYTLLDYFPEDFLLVVDESHVTLPQVRGMYNGDQARKGVLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       I VSATPG +ELE     +VEQIIRPTGL+DP ++
Sbjct: 364 GFRLPSALDNRPLRFEEYENRVHQAIYVSATPGPYELEHTPE-MVEQIIRPTGLLDPLID 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++++ DEI     +  R+L+T LTK+M+EDL+ YL E  ++V Y+HSE+KTLE
Sbjct: 423 VRPIEGQIDNLIDEIQDRIARDERVLVTTLTKKMSEDLSAYLKEMGLKVEYLHSEIKTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIR+LR G +DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RIEIIRELRKGTYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YAD +T S++ AIDET RRR  Q+ +N++H I PQ++ +KI +VI    + +
Sbjct: 543 NANGHVIMYADHVTDSMKKAIDETKRRRALQMAYNEEHGITPQTIIKKIPDVIRATQVAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              + ++   +   L+K + +  + SL  +M  AA  L+FE AA +RD I  LK
Sbjct: 603 EEESYVTKATKGKKLTKAEREQLVASLEVEMKEAAKALDFERAAELRDTIFELK 656


>gi|268315625|ref|YP_003289344.1| excinuclease ABC, B subunit [Rhodothermus marinus DSM 4252]
 gi|262333159|gb|ACY46956.1| excinuclease ABC, B subunit [Rhodothermus marinus DSM 4252]
          Length = 687

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/669 (54%), Positives = 470/669 (70%), Gaps = 15/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA+L +GI   +K Q LLG TG+GKTF ++ VI+ +QRP +VM+
Sbjct: 10  FELVAPFEPTGDQPRAIAELTEGILRGDKYQTLLGATGTGKTFVLSHVIQNVQRPTLVMS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVE+F+SYYDYYQPEAY+P TDTYIEK+ +INE+IDR+R 
Sbjct: 70  PNKTLAAQLYGEFKQFFPNNAVEFFISYYDYYQPEAYIPATDTYIEKDLAINERIDRLRL 129

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT +L+  R D IVV+SVSCIYGIGS + Y + IV L +G  +E+ ELL  LV   Y R
Sbjct: 130 RATSALVSGRRDVIVVASVSCIYGIGSPDEYREQIVPLHVGQQIERNELLRRLVNIYYTR 189

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+    GTFRV GD ++IFP++ E+ A+R+  +G++I+ I+   P TG+       I I
Sbjct: 190 NDVEFKPGTFRVRGDVVDIFPAYAEESAFRIEFWGDEIDRIARLDPTTGELGAEETAITI 249

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +VTPR  L  A+  I+EEL+ RL  L  EG+LLEAQRLEQR  +D+EML   G C
Sbjct: 250 YPAKIFVTPRDRLERAIASIEEELRWRLAVLRAEGKLLEAQRLEQRTRFDIEMLREVGYC 309

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+GR PGE P  LF+Y P+D LL +DESHVTIPQ+  MY GD  RK TL E
Sbjct: 310 SGIENYSRHLSGRAPGERPYCLFDYFPDDYLLIIDESHVTIPQVRAMYNGDRARKLTLVE 369

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL FEE+  L    I VSATPG +ELE+  G++VEQIIRPTG+ DP V
Sbjct: 370 HGFRLPSALDNRPLTFEEFEALHHQVIFVSATPGDYELEKSGGVVVEQIIRPTGIPDPEV 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+ +EI     +G R L+T LTKRMAEDL EYL    +RVRY+HSE+  L
Sbjct: 430 EVRPTEGQIDDLLEEIRQVVARGERALVTTLTKRMAEDLAEYLDRFGVRVRYLHSEIDAL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++++R LRLG+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT GRAA
Sbjct: 490 ERVDLLRGLRLGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTAGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV-------------- 725
           RN N K++LYAD IT+++Q  IDET RRR  QLE+N+KH I P++V              
Sbjct: 550 RNANGKILLYADRITEAMQRMIDETNRRRAIQLEYNRKHGITPRTVYKSREEILKSTIVA 609

Query: 726 KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           +EK   ++D    E+     I  D     L+ ++ +  ++ LR++M  AA+NL FE AA 
Sbjct: 610 EEKYRPLVDSPRYEEPEVPPIVADPVLKELTPEQKRELIEQLRREMLEAAENLEFERAAE 669

Query: 786 IRDEIKRLK 794
           +RD I  L+
Sbjct: 670 LRDTILALE 678


>gi|168185651|ref|ZP_02620286.1| excinuclease ABC, B subunit [Clostridium botulinum C str. Eklund]
 gi|169296510|gb|EDS78643.1| excinuclease ABC, B subunit [Clostridium botulinum C str. Eklund]
          Length = 657

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/654 (54%), Positives = 469/654 (71%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  + KGI   EK Q LLGVTGSGKTFTMA +IE +Q+P +V+A
Sbjct: 4   FKIHSSYKPTGDQPKAIKSISKGILKAEKFQTLLGVTGSGKTFTMANIIEEVQKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLTSEFREFFPDNCVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ERND IVV+SVSCIYG+G+ E Y ++ V L+ G   ++ E++  LV  QY+R 
Sbjct: 124 SATSALFERNDVIVVASVSCIYGLGNPEEYKKLTVSLREGMEKDRDEIMRQLVDIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I  +RGTFR  GD ++IFP+   ++  RV  FG++I++I EF  LTG  I   +   I+
Sbjct: 184 EINFVRGTFRARGDVLDIFPASSTNIGIRVEFFGDEIDKIREFDVLTGNIINTRKHALIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T +  L  A+K I+EEL+ R+  L  E +LLEAQR+ QR  +D+EM+   G C 
Sbjct: 244 PASHFATSKDKLEIAIKKIEEELEDRVEVLTAEDKLLEAQRIRQRTNFDIEMMREVGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR PG PP TL +Y P+D LLF+DESHVT+PQ+  MY GD  RK  L EY
Sbjct: 304 GIENYSRVLDGREPGTPPKTLMDYFPDDFLLFIDESHVTLPQVKAMYGGDRSRKNNLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+F+E+      T+ VSATP  +ELE     + EQIIRPTGL+DP + 
Sbjct: 364 GFRLPCAYDNRPLKFDEFEGKLNETVFVSATPAQYELEHSTN-VAEQIIRPTGLLDPEII 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+Y  I     +G R+L+T LTK+M+EDLT+YL    I+  Y+HS + T++
Sbjct: 423 VRPIKGQIDDLYSSIKETIYKGFRVLVTTLTKKMSEDLTDYLKGMGIKTEYLHSSIDTIK 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSL+QTIGRAAR
Sbjct: 483 RMEIIRDLRKGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLVQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+YAD ITK++  AI ET RRR+ Q+E+N+KH I P++V + I +VI   + E+
Sbjct: 543 NSESKVIMYADNITKAMDKAISETNRRRKIQMEYNEKHGIIPKTVLKDIRDVIQTRVAEE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                +  +  +  LSKK+ +  +    K+M +AA  L FE+AA++RDEI +LK
Sbjct: 603 EEEYKVKNNTDK--LSKKEIEKLISKYEKEMKVAAKELQFEKAAQLRDEILKLK 654


>gi|229820672|ref|YP_002882198.1| excinuclease ABC, B subunit [Beutenbergia cavernae DSM 12333]
 gi|259710322|sp|C5BV49|UVRB_BEUC1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|229566585|gb|ACQ80436.1| excinuclease ABC, B subunit [Beutenbergia cavernae DSM 12333]
          Length = 698

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/676 (53%), Positives = 480/676 (71%), Gaps = 24/676 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ PSGDQP AIAQL   + + EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 14  FEVISDFTPSGDQPDAIAQLTARLQAGEKDIVLLGATGTGKSATTAWLIEQVQRPTLVMA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++++R+RH
Sbjct: 74  PNKTLAAQLATEFRELLPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ + Y   +V+L++G  +E+ +LL   V  QY R 
Sbjct: 134 SATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVRLRVGMQIERDDLLRQFVGMQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E++A R+  FG+++E I   +PLTG  +R  E + ++
Sbjct: 194 DLSFQRGTFRVRGDTVEIIPVY-EELALRIEFFGDEVEAIHTLHPLTGDVVRAEEEMYLF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+ EL+ RL ELE  GRLLEAQRL  R TYD+EM+   G+C 
Sbjct: 253 PATHYVAGPERMERAIAGIEVELEDRLAELEGGGRLLEAQRLRMRTTYDIEMMRQIGTCS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED +L +DESH T+PQI  MY GD  RK TL E+
Sbjct: 313 GIENYSRHIDGREPGSPPHTLLDYFPEDFMLVIDESHQTVPQIGAMYEGDSSRKRTLVEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPLR+EE+      T+ +SATPG +EL Q  G+ VEQ+IRPTGLVDP + 
Sbjct: 373 GFRLPSAMDNRPLRWEEFLERIGQTVYLSATPGPYELGQSDGV-VEQVIRPTGLVDPEIV 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EIN  A++  R+L+T LTK+M+EDLT+YL ER +RVRY+HSEV TL 
Sbjct: 432 VKPTKGQIDDLLAEINARAERDERVLVTTLTKKMSEDLTDYLLERGVRVRYLHSEVDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 492 RVELLRELRTGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD++T S+ LAI+ET RRREKQ+ +N +  I+P+ ++++I ++ + +  ED
Sbjct: 552 NVSGQVHMYADSVTPSMALAIEETNRRREKQVAYNTERGIDPEPLRKRIGDITELLARED 611

Query: 741 AATTNISIDAQQLSLSKK----------------KGKAH------LKSLRKQMHLAADNL 778
             T  +     + + SK                  G A       ++ L  QMH+AA  L
Sbjct: 612 IDTKELLAGGYRQAGSKAPVPRKAGGDGSMRERLAGAATADLAELIQELTDQMHVAAGEL 671

Query: 779 NFEEAARIRDEIKRLK 794
            FE AAR+RDEI  LK
Sbjct: 672 QFEVAARLRDEISDLK 687


>gi|167748523|ref|ZP_02420650.1| hypothetical protein ANACAC_03267 [Anaerostipes caccae DSM 14662]
 gi|167652515|gb|EDR96644.1| hypothetical protein ANACAC_03267 [Anaerostipes caccae DSM 14662]
          Length = 681

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/654 (53%), Positives = 479/654 (73%), Gaps = 4/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI QL+ G     + + LLGVTGSGKTFTMA VI+ + +P +++A
Sbjct: 24  FELVSEFEPTGDQPEAIRQLVSGFKQGNQFETLLGVTGSGKTFTMANVIQELNKPTLIIA 83

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+SS+N++ID++RH
Sbjct: 84  HNKTLAAQLYSEFKAFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSVNDEIDKLRH 143

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L+ER D IVVSSVSCIYGIGS E+YS+M++ L+ G   ++ +++  L+  QY R 
Sbjct: 144 SATAALIERKDVIVVSSVSCIYGIGSKENYSEMMISLRPGMEKDRDQVIDELINIQYVRN 203

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGTFRV GD +EI P    + A RV  FG++I+ I EF  LTG+  R++  + I+
Sbjct: 204 ELDFKRGTFRVKGDVLEILPVSTFEEAVRVEFFGDEIDRIVEFDVLTGEVKRSINFLAIF 263

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +  A+  IK+EL  R+   ++  +L+EAQR+ +R  +D+EML  TG C 
Sbjct: 264 PASHYVVPQEQIEQAIVNIKQELAERVKYFQENDQLIEAQRIAERTNFDIEMLRETGFCS 323

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PGEPP TL ++  +D L+ VDESH+T+PQI GMY GD  RK+TL ++
Sbjct: 324 GIENYSRHLTGGKPGEPPSTLIDFFGDDFLVIVDESHITVPQIGGMYSGDQSRKSTLVDF 383

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F E+       + VSATP  +E E  + +  EQIIRPTGL+DPP++
Sbjct: 384 GFRLPSAKDNRPLEFSEFESKIDQMMFVSATPSKYEAEH-ELLRAEQIIRPTGLLDPPID 442

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  E++   +QG ++L+T LTKRMAE+LT+Y+ E  IRV+Y+HS++ TLE
Sbjct: 443 VRPVKGQIDDLLSEVHKETEQGHKVLVTTLTKRMAEELTDYMREVGIRVKYLHSDIDTLE 502

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RDLR+  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSL+QT+GRAAR
Sbjct: 503 RTEIVRDLRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLVQTVGRAAR 562

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S++ AI ET RRR  Q ++NK+H I PQ++++ I ++I     E+
Sbjct: 563 NSEGHVIMYADNMTDSMEAAISETNRRRAIQDQYNKEHGITPQTIQKDIRDLIKISDEEE 622

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A  +N   +    S++KK+ K +++ L K+M+ AA  LNFEEAA +RDE+K  K
Sbjct: 623 AEQSN---EKDIESMNKKELKENIERLTKKMNRAAAELNFEEAAALRDELKEYK 673


>gi|329766890|ref|ZP_08258418.1| UvrABC system protein B [Gemella haemolysans M341]
 gi|328837615|gb|EGF87240.1| UvrABC system protein B [Gemella haemolysans M341]
          Length = 666

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/662 (54%), Positives = 466/662 (70%), Gaps = 18/662 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q+ Y P GDQ  AIA+L +G+++ EK Q LLG TG+GKTFT+A +++ + +P +V+A
Sbjct: 10  FDLQSKYEPKGDQINAIAELTEGLNNGEKYQTLLGATGTGKTFTIANIVKNVGKPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY+E K FFP+N VEYFVSYYDY+QPEAYVP TDTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYNELKEFFPNNRVEYFVSYYDYFQPEAYVPSTDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL +R+D I+VSSVSCIYG+GS E YS +++ L++GD + + ++L  L+  QY R 
Sbjct: 130 SATSSLFDRDDVIIVSSVSCIYGLGSPEEYSSLVLSLRVGDEISRNKMLEKLISIQYMRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD IEIFP+   + + RV MFG++I+ I E  PLTG+ +  +E I IY
Sbjct: 190 DIEFTRGTFRVRGDVIEIFPASRSENSVRVEMFGDEIDRIREINPLTGEVLSELEHIAIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+V        A+K I+ EL+ RL  L  E +LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 250 PASHFVAGDEKTKEAIKRIRAELEERLKVLNMENKLLEAQRLEQRTNYDLEMMEEMGFCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R PG  P TL +Y P+D LL VDESHVT+PQ+ GM+ GD  RK  L +Y
Sbjct: 310 GIENYSLHLTLREPGSTPYTLLDYFPDDWLLVVDESHVTLPQVRGMFNGDRARKQVLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL FEE+       I VSATPG +ELE     I EQIIRPTGL+DP ++
Sbjct: 370 GFRLPTALDNRPLNFEEFEKKLNQAIFVSATPGDFELEHSTK-ITEQIIRPTGLLDPIID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV D+  E      +G R+L+T LTK+MAE LT YL E  ++V Y+HS++KTLE
Sbjct: 429 IRPVSDQVFDITKEAEKIIAKGERVLITTLTKKMAESLTAYLKENGLKVEYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLGKFD+L+GINLLREGLDIPE  LVAILDADKEGFLR   +L+QTIGRAAR
Sbjct: 489 RTEIIRNLRLGKFDILIGINLLREGLDIPEVSLVAILDADKEGFLRGDKALLQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733
           N N +VI+YAD IT+S++ AIDET RRRE Q+ +N++H I PQ++ + I + I       
Sbjct: 549 NANGRVIMYADNITRSMRKAIDETNRRREIQMAYNEEHGIIPQTIIKDIRDSISAKKEVV 608

Query: 734 -DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            D  +LE   + NI+ D  +          HL  L +QM  AA+   FE+AA++RD I  
Sbjct: 609 KDDEILELEESANINDDNIE---------EHLAELEQQMFAAAEKFEFEQAAKLRDTIAE 659

Query: 793 LK 794
           LK
Sbjct: 660 LK 661


>gi|225856905|ref|YP_002738416.1| excinuclease ABC subunit B [Streptococcus pneumoniae P1031]
 gi|254764914|sp|C1CKX8|UVRB_STRZP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|225726094|gb|ACO21946.1| excinuclease ABC, B subunit [Streptococcus pneumoniae P1031]
          Length = 662

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/663 (54%), Positives = 479/663 (72%), Gaps = 5/663 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           NH  D   F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  +
Sbjct: 3   NHITD-NQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKV 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N
Sbjct: 62  NKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           ++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ L
Sbjct: 122 DEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDL 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ + 
Sbjct: 182 VDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLG 241

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V+ + I+  +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EM
Sbjct: 242 EVDHLAIFPATHFVTNDDHMEVAVAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEM 301

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G    +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+TI QI GMY GD  
Sbjct: 302 LREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDRS 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  YGFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPT
Sbjct: 362 RKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP VE+R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YM
Sbjct: 421 GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LI
Sbjct: 481 HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++
Sbjct: 541 QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL 600

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           I  +    A   +  +D    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  
Sbjct: 601 I-AVTKAVAKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLE 657

Query: 793 LKS 795
           +K+
Sbjct: 658 VKA 660


>gi|15901100|ref|NP_345704.1| excinuclease ABC subunit B [Streptococcus pneumoniae TIGR4]
 gi|111658438|ref|ZP_01409117.1| hypothetical protein SpneT_02000409 [Streptococcus pneumoniae
           TIGR4]
 gi|148985134|ref|ZP_01818373.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP3-BS71]
 gi|148989260|ref|ZP_01820640.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP6-BS73]
 gi|148998669|ref|ZP_01826108.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP11-BS70]
 gi|149002606|ref|ZP_01827538.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP14-BS69]
 gi|149007103|ref|ZP_01830772.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP18-BS74]
 gi|168486559|ref|ZP_02711067.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC1087-00]
 gi|168575694|ref|ZP_02721609.1| excinuclease ABC, B subunit [Streptococcus pneumoniae MLV-016]
 gi|182684034|ref|YP_001835781.1| excinuclease ABC subunit B [Streptococcus pneumoniae CGSP14]
 gi|221231933|ref|YP_002511085.1| UvrABC system protein B (UvrB protein) [Streptococcus pneumoniae
           ATCC 700669]
 gi|225854704|ref|YP_002736216.1| excinuclease ABC subunit B [Streptococcus pneumoniae JJA]
 gi|237649939|ref|ZP_04524191.1| excinuclease ABC subunit B [Streptococcus pneumoniae CCRI 1974]
 gi|237822511|ref|ZP_04598356.1| excinuclease ABC subunit B [Streptococcus pneumoniae CCRI 1974M2]
 gi|303258874|ref|ZP_07344853.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP-BS293]
 gi|303264228|ref|ZP_07350148.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS397]
 gi|303266141|ref|ZP_07352034.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS457]
 gi|303268132|ref|ZP_07353932.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS458]
 gi|307067887|ref|YP_003876853.1| DNA excision repair complex helicase [Streptococcus pneumoniae
           AP200]
 gi|18279297|sp|Q54986|UVRB_STRPN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238691159|sp|B2IPP4|UVRB_STRPS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|254764911|sp|B8ZJQ9|UVRB_STRPJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|254764913|sp|C1CEJ5|UVRB_STRZJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|14972720|gb|AAK75344.1| excinuclease ABC, subunit B [Streptococcus pneumoniae TIGR4]
 gi|147755506|gb|EDK62554.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP11-BS70]
 gi|147759217|gb|EDK66210.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP14-BS69]
 gi|147761407|gb|EDK68373.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP18-BS74]
 gi|147922579|gb|EDK73697.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP3-BS71]
 gi|147925238|gb|EDK76317.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP6-BS73]
 gi|182629368|gb|ACB90316.1| excinuclease ABC subunit B [Streptococcus pneumoniae CGSP14]
 gi|183570451|gb|EDT90979.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC1087-00]
 gi|183578231|gb|EDT98759.1| excinuclease ABC, B subunit [Streptococcus pneumoniae MLV-016]
 gi|220674393|emb|CAR68943.1| UvrABC system protein B (UvrB protein) [Streptococcus pneumoniae
           ATCC 700669]
 gi|225722985|gb|ACO18838.1| excinuclease ABC, B subunit [Streptococcus pneumoniae JJA]
 gi|301800159|emb|CBW32764.1| UvrABC system protein B (UvrB protein) [Streptococcus pneumoniae
           OXC141]
 gi|301801906|emb|CBW34630.1| UvrABC system protein B (UvrB protein) [Streptococcus pneumoniae
           INV200]
 gi|302639817|gb|EFL70273.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP-BS293]
 gi|302642349|gb|EFL72696.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS458]
 gi|302644311|gb|EFL74565.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS457]
 gi|302646040|gb|EFL76267.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS397]
 gi|306409424|gb|ADM84851.1| Helicase subunit of the DNA excision repair complex [Streptococcus
           pneumoniae AP200]
 gi|332074569|gb|EGI85043.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA17545]
 gi|332200686|gb|EGJ14758.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA41317]
 gi|332203087|gb|EGJ17155.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA47901]
          Length = 662

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/663 (54%), Positives = 479/663 (72%), Gaps = 5/663 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           NH  D   F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  +
Sbjct: 3   NHITD-NQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKV 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N
Sbjct: 62  NKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           ++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ L
Sbjct: 122 DEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDL 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ + 
Sbjct: 182 VDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLG 241

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V+ + I+  +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EM
Sbjct: 242 EVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEM 301

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G    +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+TI QI GMY GD  
Sbjct: 302 LREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDRS 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  YGFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPT
Sbjct: 362 RKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP VE+R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YM
Sbjct: 421 GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LI
Sbjct: 481 HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++
Sbjct: 541 QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL 600

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           I  +    A   +  +D    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  
Sbjct: 601 I-AVTKAVAKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLE 657

Query: 793 LKS 795
           +K+
Sbjct: 658 VKA 660


>gi|306833826|ref|ZP_07466951.1| excision endonuclease subunit UvrB [Streptococcus bovis ATCC
           700338]
 gi|304424020|gb|EFM27161.1| excision endonuclease subunit UvrB [Streptococcus bovis ATCC
           700338]
          Length = 663

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/656 (54%), Positives = 478/656 (72%), Gaps = 5/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPEAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGEVEHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  I EE++ ++ + E EG+L+EAQR+ QR  YD+EML   G   
Sbjct: 250 PATHFMTNEEHMEHAIHNILEEMEEQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ VDESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMVDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +ELEQ    +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYELEQTD-TVVEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN  A++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINRRAEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT+S+Q A+DET RRRE Q+ +N++H I PQ++K+ I    D I +  
Sbjct: 549 NSEGHVIMYADKITESMQKAMDETARRREIQMRYNEEHGIIPQTIKKDIR---DLIAISK 605

Query: 741 AATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           ++ T+++ D     +++K + +  +K L+KQM  AA+ L+FE AA++RD +  LK+
Sbjct: 606 SSDTDVTEDIPDYNAMTKAERQETIKKLQKQMQEAAEMLDFELAAQLRDMVLELKA 661


>gi|149019230|ref|ZP_01834592.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP23-BS72]
 gi|147931100|gb|EDK82079.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP23-BS72]
          Length = 662

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/663 (54%), Positives = 479/663 (72%), Gaps = 5/663 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           NH  D   F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  +
Sbjct: 3   NHITD-NQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKV 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N
Sbjct: 62  NKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           ++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ L
Sbjct: 122 DEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDL 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ + 
Sbjct: 182 VDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLG 241

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V+ + I+  +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EM
Sbjct: 242 EVDHLAIFPATHFVTNDDYMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEM 301

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G    +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+TI QI GMY GD  
Sbjct: 302 LREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDRS 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  YGFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPT
Sbjct: 362 RKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP VE+R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YM
Sbjct: 421 GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LI
Sbjct: 481 HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++
Sbjct: 541 QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL 600

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           I  +    A   +  +D    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  
Sbjct: 601 I-AVTKAVAKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLE 657

Query: 793 LKS 795
           +K+
Sbjct: 658 VKA 660


>gi|313903598|ref|ZP_07836988.1| Excinuclease ABC subunit B [Thermaerobacter subterraneus DSM 13965]
 gi|313466151|gb|EFR61675.1| Excinuclease ABC subunit B [Thermaerobacter subterraneus DSM 13965]
          Length = 695

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/656 (55%), Positives = 474/656 (72%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++  ++ P GDQP AI  + +      +V  LLG TG+GKT TMA VIE +Q P +V+A
Sbjct: 4   FKVVAEFEPRGDQPKAIEAISRAFREGAQVVTLLGATGTGKTATMAWVIEQLQLPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL +EFK FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 64  HNKTLAGQLAAEFKQFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDALINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D IVV+SVSCIYG+G+ E Y  +++ L++G+ + ++++L  LV  QY R 
Sbjct: 124 SATSSLFERKDVIVVASVSCIYGLGAPEDYRDLVLSLRVGNEMPREQILRKLVDIQYARN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD IEIFP+ + + A RV +FG++I+ ++E   LTG+ +   + + IY
Sbjct: 184 DVDFQRGTFRVRGDVIEIFPASMAERAIRVELFGDEIDRLTEIDALTGEVLAYRDHVAIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    L  A++ I+ EL+ RL EL    +LLEAQRLEQR  YDLEML   G C 
Sbjct: 244 PASHYVTHEWKLKRAIESIERELEQRLAELRARDKLLEAQRLEQRTRYDLEMLREVGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGEPP TL +Y P   L  +DESHVTIPQ+  MY G+  RK +L EY
Sbjct: 304 GIENYSRHLTGRAPGEPPYTLLDYFPRPFLCIIDESHVTIPQLRAMYEGEMSRKDSLIEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+       + VSATPG +E E    +IVEQI+RPTGL+DP +E
Sbjct: 364 GFRLPSARDNRPLKFEEFWEKVGQVLFVSATPGPFEREHSD-VIVEQIVRPTGLLDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q+ED+  EI    ++G R+L+T LTKRMAEDLT+YL E  ++VRY+HSEV TLE
Sbjct: 423 VRPTRGQIEDLLGEIRQRVERGHRVLVTTLTKRMAEDLTDYLREMGVKVRYLHSEVDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS T+LIQTIGRAAR
Sbjct: 483 RMEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSTTALIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  KVI+YADTIT S++ AI+ET RRR+ Q E+N++H I PQ+V++ + +VI+     +
Sbjct: 543 NVEGKVIMYADTITDSMRQAIEETYRRRKIQEEYNRRHGITPQTVRKAVRDVIEATHAAE 602

Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++   ++LS L + +    +K LRK+M  AA +L FE AA +RD I  L++
Sbjct: 603 RPPEYLA--GKRLSDLPRHQIPEIVKKLRKEMEEAARDLEFERAALLRDMILELEA 656


>gi|118443519|ref|YP_877357.1| excinuclease ABC subunit B [Clostridium novyi NT]
 gi|189037961|sp|A0PYA5|UVRB_CLONN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|118133975|gb|ABK61019.1| excinuclease ABC, B subunit [Clostridium novyi NT]
          Length = 657

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/654 (54%), Positives = 468/654 (71%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  + +GI   EK Q LLGVTGSGKTFTMA +IE +Q+P +V+A
Sbjct: 4   FKIHSPYKPTGDQPRAIKSISEGILKGEKFQTLLGVTGSGKTFTMANIIEKVQKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLTSEFREFFPENCVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ERND IVV+SVSCIYG+G+ E Y ++ V L+ G   ++ E++  LV  QY+R 
Sbjct: 124 SATSALFERNDVIVVASVSCIYGLGNPEEYKKLTVSLREGMEKDRDEIMRQLVDIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I  +RGTFR  GD ++IFP+   ++  RV  FG++I++I EF  LTG  I   +   I+
Sbjct: 184 EINFVRGTFRARGDVLDIFPASSTNIGIRVEFFGDEIDKIREFDVLTGNIISARKHALIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T +  L  A+K I+EEL+ R+  L  E +LLEAQR+ QR  +D+EM+   G C 
Sbjct: 244 PASHFATSKDKLEIAIKKIEEELEDRVKVLTAEDKLLEAQRVRQRTNFDIEMMREVGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR PG PP TL +Y P+D LLF+DESHVT+PQ+  MY GD  RK  L EY
Sbjct: 304 GIENYSRVLDGRAPGTPPKTLMDYFPDDFLLFIDESHVTLPQVKAMYGGDRSRKNNLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+F+E+      T+ VSATP  +ELE     + EQIIRPTGL+DP + 
Sbjct: 364 GFRLPCAYDNRPLKFDEFEGKLNQTVFVSATPAQYELEHSTN-VAEQIIRPTGLLDPEII 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+Y  I     +G R+L+T LTK+M+EDLT+YL    I+  Y+HS + T++
Sbjct: 423 VKPIKGQIDDLYASIKETIDKGFRVLVTTLTKKMSEDLTDYLKSMGIKTEYLHSSIDTIK 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR GKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSL+QTIGRAAR
Sbjct: 483 RMEIIRDLRKGKFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLVQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+YAD ITK++  AI ET RRR+ Q+E+N KH I P++V + I +VI   + ED
Sbjct: 543 NSESKVIMYADNITKAMDKAISETNRRRKIQMEYNDKHGIVPRTVLKDIRDVIQTKVAED 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A   ++ +  +  LSKK+ +  +    ++M +AA  L FE AA +RDEI +LK
Sbjct: 603 EAEYKVNNNTDK--LSKKEIEKLINKYEEEMKVAAKELQFERAAELRDEILKLK 654


>gi|257126291|ref|YP_003164405.1| excinuclease ABC subunit B [Leptotrichia buccalis C-1013-b]
 gi|257050230|gb|ACV39414.1| excinuclease ABC, B subunit [Leptotrichia buccalis C-1013-b]
          Length = 657

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/654 (54%), Positives = 479/654 (73%), Gaps = 5/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI ++++ +      Q+LLGVTGSGKTFT+A VIE + RPA++MA
Sbjct: 3   FKIHSKFQPTGDQPQAIQKIVENLEDGITDQILLGVTGSGKTFTVANVIEKINRPALIMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E+K FFP NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN++ID++RH
Sbjct: 63  PNKTLAAQLYNEYKQFFPENAVEYFVSYYDYYQPEAYIMQTDTYIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R D I+V+SVS IYG+GS E+Y +  + + +    E+ EL+  L+  +Y+R 
Sbjct: 123 AATAALLNRRDVIIVASVSAIYGLGSPEAYKKRSIPIDVETGFERNELIKRLISLRYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +++ PS+ +D  +R   FG+D+E ISE   LTGQKIRN++ I I 
Sbjct: 183 DIAFERGKFRVKGDILDLHPSY-QDTGYRFEFFGDDLESISEINTLTGQKIRNIKRITIM 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY+T   T     + IK+E++ R+   +KEG+LLEAQR+EQR  YDLEM+E  G C+
Sbjct: 242 PATHYLTNEDT-KVMFESIKKEMEERVNFFQKEGKLLEAQRIEQRTKYDLEMIEEIGYCK 300

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSRYLTG++ GE P TL +Y PED ++F+DESH+++PQI+GMY+GD  RK +L + 
Sbjct: 301 GVENYSRYLTGKSEGEAPDTLIDYFPEDLVVFLDESHISVPQINGMYKGDRARKQSLIDN 360

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+    P  + +SATP  +ELE   G +VEQ++RPTG+V+P ++
Sbjct: 361 GFRLPSAYDNRPLKFEEFFGKIPQVVYISATPSDYELEHSNGEVVEQLVRPTGIVEPSID 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+ DEI     +  RIL+T LTK+MAE+LT+Y  E  I+V+YMHS++ TLE
Sbjct: 421 IRETKNQIDDLMDEIKTRTARKERILVTTLTKKMAEELTDYYLEYGIKVKYMHSDIDTLE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR LR G+FDVLVGINLLREGLDIPE  LVAIL+ADKEG+LRS+ SLIQT+GRAAR
Sbjct: 481 RTEIIRGLRKGEFDVLVGINLLREGLDIPEVSLVAILEADKEGYLRSRRSLIQTMGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV   VILYAD IT S+Q AIDE  RRRE Q ++N ++NINP+S+  +I E I    +E 
Sbjct: 541 NVEGHVILYADRITGSMQEAIDEVNRRREVQEKYNLENNINPKSIVREIAESIVDYEIEK 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               N +I   +   S+K  +  +K L KQ+   A+ LNFEEA ++RD++  LK
Sbjct: 601 ENEANKAIKQYK---SEKDIEKEIKKLDKQIKKLAEELNFEEAIKLRDKMNELK 651


>gi|153854|gb|AAA27020.1| uvs402 protein [Streptococcus pneumoniae]
          Length = 668

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/669 (53%), Positives = 481/669 (71%), Gaps = 5/669 (0%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
           R   + NH  D   F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM+
Sbjct: 3   RGILMINHITD-NQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMS 61

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
           +VI  + +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIE
Sbjct: 62  QVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIE 121

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+SS+N++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + 
Sbjct: 122 KDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRD 181

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +LL+ LV  Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   L
Sbjct: 182 KLLNDLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEAL 241

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TGQ +  V+ + I+  +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR 
Sbjct: 242 TGQVLGEVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRT 301

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
            YD+EML   G    +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GM
Sbjct: 302 EYDIEMLREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGM 361

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           Y GD  RK  L  YGFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I E
Sbjct: 362 YNGDRSRKKMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-E 420

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           QIIRPTGL+DP VE+R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  
Sbjct: 421 QIIRPTGLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMG 480

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           I+V+YMHS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR
Sbjct: 481 IKVKYMHSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLR 540

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           ++  LIQTIGRAARN    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K
Sbjct: 541 NERGLIQTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIK 600

Query: 727 EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           ++I ++I  +    A   +  +D    SL+K++ K  +K L KQM  A + L+FE AA+I
Sbjct: 601 KEIRDLI-AVTKAVAKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQI 657

Query: 787 RDEIKRLKS 795
           RD +  +K+
Sbjct: 658 RDMMLEVKA 666


>gi|296876387|ref|ZP_06900439.1| excision endonuclease subunit UvrB [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432677|gb|EFH18472.1| excision endonuclease subunit UvrB [Streptococcus parasanguinis
           ATCC 15912]
          Length = 662

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/658 (54%), Positives = 479/658 (72%), Gaps = 10/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ + +V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGDVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLKVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINARVERGERTFVTTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I     + 
Sbjct: 549 NSEGHVIMYADTMTQSMQKAIDETARRRKIQIAYNEEHGIVPQTIKKEIRDLISVTKAVA 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            E+    +I+      SL++++ K  +K L+ QM  A + L+FE AA+IRD +  +K+
Sbjct: 609 KEEDKEVDIT------SLNRQERKELVKKLQGQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|118463533|ref|YP_882325.1| excinuclease ABC subunit B [Mycobacterium avium 104]
 gi|118164820|gb|ABK65717.1| excinuclease ABC, B subunit [Mycobacterium avium 104]
          Length = 722

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/690 (53%), Positives = 482/690 (69%), Gaps = 31/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I + E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 32  FEVVSPHAPAGDQPAAIDELERRIRAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 91

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 92  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 151

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ +SY    V+L++G  V +  LL  LV  QY R 
Sbjct: 152 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVELRVGTEVPRDALLRLLVDVQYTRN 211

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG  IR V++++I+
Sbjct: 212 DLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGDVIRQVDSLRIF 270

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I++EL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 271 PATHYVAGPERMAHAISTIEQELAERLAELEGQGKLLEAQRLRMRTNYDIEMMRQVGFCS 330

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 331 GIENYSRHIDGRGPGSPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEY 390

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 391 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 450

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI    +   R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 451 VKPTKGQIDDLIGEIRKRTEADERVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 510

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 511 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTIGRAAR 570

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YADTIT+S++ AIDET RRR KQ+ +N+ H I+PQ +++KI +++D +  E 
Sbjct: 571 NVSGEVHMYADTITESMKEAIDETERRRAKQIAYNEAHGIDPQPLRKKIADILDQVYREA 630

Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773
             T  + I + + S+S+ +      G+A                      +K L  QM  
Sbjct: 631 DDTETVEIGSGR-SMSRGRRAQGEPGRAVSAGIVEGRDTTNMPRAELADLIKDLTAQMMA 689

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE AAR RDEI  LK     +G+D
Sbjct: 690 AARDLQFELAARFRDEIADLKKE--LRGMD 717


>gi|41407433|ref|NP_960269.1| excinuclease ABC subunit B [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|254775593|ref|ZP_05217109.1| excinuclease ABC subunit B [Mycobacterium avium subsp. avium ATCC
           25291]
 gi|41395785|gb|AAS03652.1| UvrB [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 722

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/690 (53%), Positives = 482/690 (69%), Gaps = 31/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I + E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 32  FEVVSPHAPAGDQPAAIDELERRIRAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 91

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 92  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 151

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ +SY    V+L++G  V +  LL  LV  QY R 
Sbjct: 152 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVELRVGTEVPRDALLRLLVDVQYTRN 211

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG  IR V++++I+
Sbjct: 212 DLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGDVIRQVDSLRIF 270

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I++EL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 271 PATHYVAGPERMAHAISTIEQELAERLAELEGQGKLLEAQRLRMRTNYDIEMMRQVGFCS 330

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 331 GIENYSRHIDGRGPGSPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEY 390

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 391 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 450

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI    +   R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 451 VKPTKGQIDDLIGEIRKRTEADERVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 510

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 511 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTIGRAAR 570

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YADTIT+S++ AIDET RRR KQ+ +N+ H I+PQ +++KI +++D +  E 
Sbjct: 571 NVSGEVHMYADTITESMKEAIDETERRRAKQIAYNEAHGIDPQPLRKKIADILDQVYREA 630

Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773
             T  + I + + S+S+ +      G+A                      +K L  QM  
Sbjct: 631 DDTDTVEIGSGR-SMSRGRRAQGEPGRAVSAGIVEGRDTTNMPRAELADLIKDLTAQMMA 689

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE AAR RDEI  LK     +G+D
Sbjct: 690 AARDLQFELAARFRDEIADLKKE--LRGMD 717


>gi|94266611|ref|ZP_01290292.1| Excinuclease ABC, B subunit [delta proteobacterium MLMS-1]
 gi|93452757|gb|EAT03298.1| Excinuclease ABC, B subunit [delta proteobacterium MLMS-1]
          Length = 665

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/653 (55%), Positives = 462/653 (70%), Gaps = 4/653 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + +++ P+GDQP AI  L +G+ +    Q+LLGVTGSGKTFTMA+VI    RPA+V+
Sbjct: 1   MFDLVSEFAPAGDQPRAIELLSRGVMAGTPHQVLLGVTGSGKTFTMAQVIAETSRPALVL 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLYSEFK  FPHNAVEYFVSYYDYYQPEAY+P++DTYIEK+S+IN+ ID+MR
Sbjct: 61  APNKTLAAQLYSEFKELFPHNAVEYFVSYYDYYQPEAYIPQSDTYIEKDSAINDTIDQMR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H ATR+LL R D I+V+SVSCIYG+GS E Y  M + L++G+     E+   LV   Y+R
Sbjct: 121 HGATRALLTRRDVIIVASVSCIYGLGSPEEYLNMNLALQVGEDYPPAEIQRRLVHMLYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RGTFRV GD +EIFP H +D A RV +FG+ IE I    PL G     +E + +
Sbjct: 181 NDYSFHRGTFRVRGDVVEIFPVHEDDRALRVELFGDTIEAIRVVDPLRGVVHEELEEVTV 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT +   + A+K IK EL  RL EL    RLLEAQRLEQR  +DLEML+  G C
Sbjct: 241 FPGSHFVTSKERQDQAIKTIKAELTQRLAELHANKRLLEAQRLEQRTMFDLEMLQELGYC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+ T   PG PPPTL +Y P+D LLF DESHV IPQ+ GMYRGD  RK TL E
Sbjct: 301 HGIENYSRHFTRLPPGAPPPTLLDYFPDDYLLFTDESHVAIPQVRGMYRGDRSRKETLVE 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL F+E++      I VSATPG  ELE   G +VEQIIRPTGL+DP +
Sbjct: 361 YGFRLPSALDNRPLMFDEFSARVHQAIYVSATPGDHELEISGGRVVEQIIRPTGLMDPKI 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R A++QV+D+  EI   AQ+   IL+T LTKRMAEDL EY     +RVRY+HS++KTL
Sbjct: 421 EVRPAQSQVDDLLAEIRNRAQRDEAILVTTLTKRMAEDLCEYYRNIEVRVRYLHSDIKTL 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+E+IRDLR  ++DVLVGINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQT GRAA
Sbjct: 481 QRMELIRDLRRREYDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTCGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN +  VILY D I+ ++   I ET RRRE Q E+N++H I P +++ KI +++  I  +
Sbjct: 541 RNAHGMVILYGDKISAAMAATIAETERRREIQAEYNREHGITPATIRSKIKDLLATIYEQ 600

Query: 740 DAATTNI---SIDAQQLSL-SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           D  T  +   S+  +     S+++ +  +K L K+M  AA  L FE+AA +RD
Sbjct: 601 DYTTVELPEESVAEETPRFRSREELRREIKELEKEMTRAARELAFEDAAELRD 653


>gi|290474038|ref|YP_003466912.1| ATP-dependent DNA excision repair enzyme UvrAC [Xenorhabdus
           bovienii SS-2004]
 gi|289173345|emb|CBJ80122.1| ATP-dependent DNA excision repair enzyme UvrAC [Xenorhabdus
           bovienii SS-2004]
          Length = 672

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/660 (55%), Positives = 476/660 (72%), Gaps = 6/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +++A
Sbjct: 6   FKLHSDFEPGGDQPDAIRKLQEGLEDGLAHQTLLGVTGSGKTFTIANVIANLNRPTMILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSE K FFP N+VEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 66  PNKTLAAQLYSEMKEFFPENSVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  +SY +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 126 SATKALLERRDVVVVASVSAIYGLGDPDSYLKMMLHLTDGMLIDQRAILHRLAELQYTRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+   + A RV +F +++E +S F PLTGQ   NV    +Y
Sbjct: 186 DQAFQRGTFRVRGEVIDIFPAESNEHALRVELFDDEVERLSLFDPLTGQIQYNVPRYTVY 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL+ R   L    +LLE QR+ QR  +DLEM+   G C 
Sbjct: 246 PKTHYVTPRERITQAMEDIKVELEQRRKMLLASDKLLEEQRITQRTQFDLEMMNELGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+  D LL VDESHVTIPQI GMYRGD  RK TL +Y
Sbjct: 306 GIENYSRYLSGRAEGEPPPTLFDYLAADGLLVVDESHVTIPQIGGMYRGDRSRKETLVDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    +VEQ++RPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGRYELEKSGNELVEQVVRPTGLIDPEIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A++  R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 426 VRPVATQVDDLLSEIRIRAEKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 486 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI- 736
           N++ K ILY D IT S+  AI ET RRR KQ   N++H I P+ + +KI +++    P+ 
Sbjct: 546 NLHGKAILYGDRITDSMAKAIGETERRRAKQQAFNEEHGIVPKGLNKKIGDLLKIGQPVS 605

Query: 737 -LLEDAATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              +      IS D      LS K+ +  ++ L ++M+  A +L FE+AA IRD+++ L+
Sbjct: 606 GKGKAKGRGKISPDTDDYRKLSAKELENKIRELEEKMYQYARDLEFEQAANIRDQVQALR 665


>gi|152979775|ref|YP_001352938.1| excinuclease ABC subunit B [Janthinobacterium sp. Marseille]
 gi|151279852|gb|ABR88262.1| excinuclease ABC subunit B [Janthinobacterium sp. Marseille]
          Length = 696

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/669 (53%), Positives = 480/669 (71%), Gaps = 8/669 (1%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           + +K +TF    F++   + P+GDQP AIA+L++GI      Q LLGVTGSGKT+T+A V
Sbjct: 12  DEAKVVTFPNSPFRLHQPFPPAGDQPTAIAKLVEGIEDGLFYQTLLGVTGSGKTYTVANV 71

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I  M RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+
Sbjct: 72  IARMGRPAIVFAPNKTLAAQLYSEFREFFPENAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE I++MR S T+SL+ER D +++++VS IYGIG+   Y QMI+ L+  D V Q+++
Sbjct: 132 SSINEHIEQMRLSCTKSLMERRDVVIIATVSAIYGIGNPSEYHQMILTLRAKDKVSQRDV 191

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ L+  QY R +I   RGTFRV GD+I+IFP+   ++A R+ MF ++IE +  F PLTG
Sbjct: 192 IARLIAMQYTRNEIDFGRGTFRVRGDTIDIFPAEHAELAIRLEMFDDEIESLQLFDPLTG 251

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + +    +Y  SHYVTPR T+  A++ IK+EL+ RL    KE +L+E QRLEQR  +
Sbjct: 252 RVKQKIPRFTVYPGSHYVTPRATVLRAIETIKDELRERLEFFRKESKLVEEQRLEQRTRF 311

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEM++  G  + IENYSR+L+G   G+PPPTL +Y+P+D+L+F+DESHV + Q++GMY 
Sbjct: 312 DLEMMQEIGFTKGIENYSRHLSGAKAGDPPPTLVDYLPQDALMFMDESHVLMGQLNGMYN 371

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L +YGFRLPS +DNRPLRF+E+       + VSATP  +E       +VEQ+
Sbjct: 372 GDRARKTNLVDYGFRLPSALDNRPLRFDEFEGKMRQMVFVSATPADYENTHADQ-VVEQV 430

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGLVDP + +R A TQV+D+  EI    ++  R+L+T LTKRMAE LTE+L +  I+
Sbjct: 431 VRPTGLVDPLISVRPASTQVDDLMSEITDRVKKNERVLVTTLTKRMAEQLTEFLSDNGIK 490

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+
Sbjct: 491 VRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 550

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARN+    ILY D +T S++ AIDET RRR KQ+  N  +NI P  +K+ 
Sbjct: 551 RSLIQTIGRAARNLTGMAILYGDKVTDSMRRAIDETERRRAKQIAFNTANNITPIGIKKH 610

Query: 729 IMEVIDPILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           I E+ID +     A   + +    A+  ++S+K+    +K L K M   A NL FE+AA+
Sbjct: 611 IRELIDGVYSPQEARLELQVAQEHAKYEAMSEKQVSKEIKRLEKLMLGHAKNLEFEKAAQ 670

Query: 786 IRDEIKRLK 794
           +RD+++ LK
Sbjct: 671 VRDQLRILK 679


>gi|328952008|ref|YP_004369342.1| UvrABC system protein B [Desulfobacca acetoxidans DSM 11109]
 gi|328452332|gb|AEB08161.1| UvrABC system protein B [Desulfobacca acetoxidans DSM 11109]
          Length = 663

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/655 (55%), Positives = 467/655 (71%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + + P GDQP AI QL  GI +    Q+LLGVTGSGKTFT+A VI  +  P +V+A
Sbjct: 5   FQLVSPFQPQGDQPQAIRQLAAGIKTGTAHQVLLGVTGSGKTFTVANVIAQVNLPTLVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EF+ FFPHNAVEYFVSYYDYYQPEAY+P+ D YIEK+SSINE IDRMRH
Sbjct: 65  PNKTLAAQLYGEFREFFPHNAVEYFVSYYDYYQPEAYIPQADLYIEKDSSINEAIDRMRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL+R D I+V+SVSCIYG+G+ E+Y  M++ L+ G    ++E+ + LV+  Y+R 
Sbjct: 125 SATRSLLDRQDVIIVASVSCIYGLGAPEAYQGMLLYLEAGMIKSREEVQAKLVEILYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FR  GD +EIFP++ ED A R+  +G+ +E I E  PL  Q  + +E I IY
Sbjct: 185 DIDFHRGVFRARGDRLEIFPAYEEDRAIRIDFWGDVVESIQEIDPLRRQSQKKLEKIAIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A+  I+ EL  RL   + +G+LLEAQRL +R  +DLEML   G C 
Sbjct: 245 PASHYVTPDSRRQEALVAIEAELHERLAWFKNQGKLLEAQRLWERTRFDLEMLREMGFCH 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGE PPTL +Y+P  SL+ +DESH+++PQ+ GMY GD  RK TL EY
Sbjct: 305 GIENYSRHLTGRQPGEAPPTLLDYLPRKSLVVIDESHISVPQLRGMYNGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       I VSATPG +ELE+ QG +VEQI+RPTGL+DP + 
Sbjct: 365 GFRLPSALDNRPLNFSEFEGRVQQVIYVSATPGPYELEKAQGRVVEQIVRPTGLIDPKIT 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ A  QV+D+  EI +   +  R+L+T LTKR+AEDLTEY     ++VRY+HS++ TLE
Sbjct: 425 VKPATNQVDDLLGEIRIRLGRQERVLVTTLTKRLAEDLTEYYQNLGLKVRYLHSDITTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG F+VL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT GRAAR
Sbjct: 485 RMEIIRDLRLGVFEVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTCGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +VN +V LYAD +T S+Q A+ ET RRR++Q  +N++H I P ++++ I +++  +  +D
Sbjct: 545 HVNGEVFLYADRVTPSMQAALKETQRRRQRQRAYNRQHGITPTTIQKGIQDILASVYEKD 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T   + +     L  +    HL  L+K+M  AA  L FE AA +RD IK L+S
Sbjct: 605 YVTVAAAQEEPAPYLLPQDIPRHLARLKKEMQAAAKKLEFERAAELRDRIKSLES 659


>gi|323127535|gb|ADX24832.1| excinuclease ABC subunit B [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 663

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/654 (53%), Positives = 474/654 (72%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVINKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ I  V+ + ++
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKTIGEVDHLILF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  ++  I+ EL+ +L   E EG+LLEAQRL QR  YD+EML   G   
Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELEEQLKVFETEGKLLEAQRLRQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR  GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 310 GVENYSRHMDGRAAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ    IVEQIIRPTGL+DP ++
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTD-TIVEQIIRPTGLLDPEID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  Q++D+  EIN   ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPSMGQMDDLLGEINQRVERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD +T+S+Q AIDET RRRE Q+ +N+ H I PQ++K+ I ++I      +
Sbjct: 549 NADGHVIMYADKVTESMQRAIDETARRREIQMAYNEAHGIIPQTIKKDIRDLISISKAAE 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +     ++D + +S S++  K  +K+L+KQM  AA+ L+FE AA+IRD I  LK
Sbjct: 609 SDVAETAVDYETMSRSER--KEAIKTLQKQMQEAAELLDFELAAQIRDMILELK 660


>gi|312866187|ref|ZP_07726408.1| excinuclease ABC, B subunit [Streptococcus downei F0415]
 gi|311098591|gb|EFQ56814.1| excinuclease ABC, B subunit [Streptococcus downei F0415]
          Length = 663

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/661 (54%), Positives = 476/661 (72%), Gaps = 15/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AI QL+  I   EK Q+LLG TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FHLVSKYQPAGDQPQAIEQLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEIFRDQLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  +  A+RV  FG++I+ I E   LTG  +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPASRDQHAFRVEFFGDEIDRIREIDALTGHNLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  I+ EL+ +L   E EG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFMTNDEHMEVAISRIQAELQQQLQLFESEGKLLEAQRLKQRTDYDIEMLREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINDRVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  L+AILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T S+Q A+DET RRRE Q+ +N++H I PQ++K++I ++I       
Sbjct: 549 NSQGHVIMYADTVTDSMQKAMDETARRREIQMAYNEEHGIVPQTIKKEIRDLI------- 601

Query: 741 AATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A T  S D+Q        ++SKK+ +  +K L+KQM  AA+ L+FE AA+IRD +  LK
Sbjct: 602 -AITKTSQDSQVAEEVDVSTMSKKERQETIKKLQKQMQEAAELLDFELAAQIRDMVLELK 660

Query: 795 S 795
           +
Sbjct: 661 A 661


>gi|251782717|ref|YP_002997020.1| excinuclease ABC subunit B [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391347|dbj|BAH81806.1| excinuclease ABC subunit B [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 663

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/654 (53%), Positives = 474/654 (72%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVINKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ I  V+ + ++
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKTIGEVDHLILF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  ++  I+ EL+ +L   E EG+LLEAQRL QR  YD+EML   G   
Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELEEQLKVFEAEGKLLEAQRLRQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR  GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 310 GVENYSRHMDGRAAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ    IVEQIIRPTGL+DP ++
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTD-TIVEQIIRPTGLLDPEID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  Q++D+  EIN   ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPSMGQMDDLLGEINQRVERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD +T+S+Q AIDET RRRE Q+ +N+ H I PQ++K+ I ++I      +
Sbjct: 549 NADGHVIMYADKVTESMQRAIDETARRREIQMAYNEAHGIIPQTIKKDIRDLISISKAAE 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +     ++D + +S S++  K  +K+L+KQM  AA+ L+FE AA+IRD I  LK
Sbjct: 609 SDVAETAVDYETMSRSER--KEAIKTLQKQMQEAAELLDFELAAQIRDMILELK 660


>gi|322375330|ref|ZP_08049843.1| excinuclease ABC subunit B [Streptococcus sp. C300]
 gi|321279593|gb|EFX56633.1| excinuclease ABC subunit B [Streptococcus sp. C300]
          Length = 662

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K+   E+ D I +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKK---EIRDLIAVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A +     +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVSKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|148993848|ref|ZP_01823250.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP9-BS68]
 gi|168489066|ref|ZP_02713265.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP195]
 gi|147927673|gb|EDK78698.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP9-BS68]
 gi|183572586|gb|EDT93114.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP195]
 gi|332073577|gb|EGI84056.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA17570]
          Length = 662

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/662 (54%), Positives = 479/662 (72%), Gaps = 5/662 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           NH  D   F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  +
Sbjct: 3   NHITD-NQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKV 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N
Sbjct: 62  NKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           ++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ L
Sbjct: 122 DEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDL 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ + 
Sbjct: 182 VDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLG 241

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V+ + I+  +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EM
Sbjct: 242 EVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEM 301

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G    +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  
Sbjct: 302 LREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRS 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  YGFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPT
Sbjct: 362 RKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP VE+R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YM
Sbjct: 421 GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LI
Sbjct: 481 HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H+I PQ++K++I ++
Sbjct: 541 QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMTYNEEHDIVPQTIKKEIRDL 600

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           I  +    A   +  +D    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  
Sbjct: 601 I-AVTKAVAKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLE 657

Query: 793 LK 794
           +K
Sbjct: 658 VK 659


>gi|15903161|ref|NP_358711.1| excinuclease ABC subunit B [Streptococcus pneumoniae R6]
 gi|116516486|ref|YP_816567.1| excinuclease ABC subunit B [Streptococcus pneumoniae D39]
 gi|30913391|sp|Q8DPK7|UVRB_STRR6 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|122278547|sp|Q04K81|UVRB_STRP2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|15458744|gb|AAK99921.1| Exonuclease ABC - subunit B [Streptococcus pneumoniae R6]
 gi|116077062|gb|ABJ54782.1| excinuclease ABC, B subunit [Streptococcus pneumoniae D39]
          Length = 662

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/663 (54%), Positives = 479/663 (72%), Gaps = 5/663 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           NH  D   F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  +
Sbjct: 3   NHITD-NQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKV 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N
Sbjct: 62  NKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           ++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ L
Sbjct: 122 DEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDL 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ + 
Sbjct: 182 VDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLG 241

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V+ + I+  +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EM
Sbjct: 242 EVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEM 301

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G    +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  
Sbjct: 302 LREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRS 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  YGFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPT
Sbjct: 362 RKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP VE+R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YM
Sbjct: 421 GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LI
Sbjct: 481 HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++
Sbjct: 541 QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL 600

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           I  +    A   +  +D    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  
Sbjct: 601 I-AVTKAVAKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLE 657

Query: 793 LKS 795
           +K+
Sbjct: 658 VKA 660


>gi|284990473|ref|YP_003409027.1| excinuclease ABC subunit B [Geodermatophilus obscurus DSM 43160]
 gi|284063718|gb|ADB74656.1| excinuclease ABC, B subunit [Geodermatophilus obscurus DSM 43160]
          Length = 704

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/681 (53%), Positives = 489/681 (71%), Gaps = 28/681 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ PSGDQPAAI  L + ++S EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 14  FRVVSEFQPSGDQPAAIEALAEKVNSGEKDTVLLGATGTGKSATTAWLIEQVQRPTLVMA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P  AVEYFVSYYDYYQPEAYVP+TDTYIEK+SS+NE+++R+RH
Sbjct: 74  PNKTLAAQLANEFRELLPDAAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSVNEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVS+VSCIYG+G+ E Y    +++K+G+  ++ ELL +LV +QY R 
Sbjct: 134 SATNSLLTRRDVVVVSTVSCIYGLGTPEEYVDRALKIKVGEERDRDELLRTLVTEQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+IE+FP + E++A R+ MFG+++E +   +PLTG+ +R V+ + ++
Sbjct: 194 DLSFTRGTFRVRGDTIEVFPVY-EELACRIEMFGDEVERLYYLHPLTGEVVREVDELFVF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+ EL++RL ELE++G+LLEAQRL  R TYD+EM+   G C 
Sbjct: 253 PATHYVAGPERMERAISTIEAELEVRLAELERQGKLLEAQRLRMRTTYDIEMMRQVGFCS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG     L +Y P+D LL +DESHVT+PQI GMY GD  RK TL E+
Sbjct: 313 GIENYSRHIDGRAPGTAGACLIDYFPDDFLLVIDESHVTVPQIGGMYEGDMSRKRTLVEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++EE+      T+ +SATPG +EL +  G +VEQ+IRPTGLVDP V 
Sbjct: 373 GFRLPSAMDNRPLKWEEFTDRIGQTVYLSATPGDYELGRTGGEVVEQVIRPTGLVDPEVL 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI +  ++  R+L+T LTK+MAEDLT+YL E  I+VRY+HSEV TL 
Sbjct: 433 VKPTKGQIDDLVHEIRVRVEKDERVLVTTLTKKMAEDLTDYLLELGIKVRYLHSEVDTLR 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 493 RVELLRELRQGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGKSLIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738
           NV+ +V +YADTIT S+  AI+ET RRREKQ+ +N++  I+PQ +++KI++++D I    
Sbjct: 553 NVSGQVHMYADTITPSMAQAIEETNRRREKQIAYNRERGIDPQPLRKKIVDILDGIYRAA 612

Query: 739 EDAATTN-ISIDAQQLS--------LSKKKG------------KAHLKSLRKQMH----L 773
           EDA +   +    +Q S        LS KK             +A L  L  QM+     
Sbjct: 613 EDAESIELVGGSGRQQSRGKAPVPGLSSKKAAKAGGIDVQGLPRAELADLITQMNDQMLA 672

Query: 774 AADNLNFEEAARIRDEIKRLK 794
           AA  L FE AAR+RDE+  LK
Sbjct: 673 AARELQFEVAARLRDELTELK 693


>gi|312135237|ref|YP_004002575.1| excinuclease ABC subunit B [Caldicellulosiruptor owensensis OL]
 gi|311775288|gb|ADQ04775.1| excinuclease ABC, B subunit [Caldicellulosiruptor owensensis OL]
          Length = 661

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/663 (55%), Positives = 487/663 (73%), Gaps = 17/663 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+GDQP AI  L +GI   EK Q LLGVTGSGKTFTMAKVIE +QRP +V+A
Sbjct: 4   FKLVSDFKPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSINE+ID++RH
Sbjct: 64  HNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +GS E Y  + + L+ G + ++ E++  L++ QY+R 
Sbjct: 124 SATSALFERRDVIIVASVSCIYSLGSPEDYLNLTISLRPGMTKDRDEVIRELIRMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+   D A R+  FG++IE I+EF  +TG+ I     + I+
Sbjct: 184 DIDFRRGRFRVRGDVLEVFPASNTDRAIRIEFFGDEIERITEFNVVTGEVIGRRNHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    L  A+K I+EEL+ RL EL   G+L+EAQRLEQR  YD+EML+  G C+
Sbjct: 244 PASHYVTTAEKLKRAIKSIEEELEQRLKELRSMGKLVEAQRLEQRTRYDIEMLQEMGFCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR P  PP TL +Y P+D ++F+DESHVTIPQ+  MY GD  RK  L EY
Sbjct: 304 GIENYSRHLTGRPPESPPYTLLDYFPKDFIMFIDESHVTIPQVRAMYNGDRARKDALVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I VSATPG +E+++    IVEQIIRPTGLVDP +E
Sbjct: 364 GFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYEIKKSSR-IVEQIIRPTGLVDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +   + Q++ +  EI    ++  R+L+T LTK+MAE LT+YL +  I+VRYMHS++ T+E
Sbjct: 423 VHPVQGQIDHLIGEIRKRVEKNQRVLVTTLTKKMAESLTDYLKDVGIKVRYMHSDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ KVI+YAD IT ++Q AIDET RRR+ Q+E+N+KH I PQ+VK+ I ++I+      
Sbjct: 543 NVDGKVIMYADRITNAMQRAIDETNRRRKIQIEYNQKHGIIPQTVKKGIRQIIE------ 596

Query: 741 AATTNISIDAQQL---------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            AT +++ + ++          +++K++ K ++K L ++M   A  L FE+AA++RD+I 
Sbjct: 597 -ATVSVAEEEEKYEVVEKDIVKNMTKEEIKEYIKELEQEMKKLAIELEFEKAAKVRDKIF 655

Query: 792 RLK 794
            L+
Sbjct: 656 ELR 658


>gi|134300897|ref|YP_001114393.1| excinuclease ABC subunit B [Desulfotomaculum reducens MI-1]
 gi|134053597|gb|ABO51568.1| Excinuclease ABC subunit B [Desulfotomaculum reducens MI-1]
          Length = 672

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/654 (53%), Positives = 478/654 (73%), Gaps = 2/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++D+ P GDQP AI +L+ GI    + Q+LLG TG+GKTFTMA +I+ ++RP +++A
Sbjct: 3   FKLKSDFSPRGDQPRAIEKLVAGIDKGLRHQVLLGATGTGKTFTMANIIQEVKRPTLILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL SE K FFP N+VEYFVSY+DYYQPEAY+P TDTYIEK+SS+N++ID++RH
Sbjct: 63  PNKTLAAQLCSEMKEFFPENSVEYFVSYFDYYQPEAYIPHTDTYIEKDSSLNDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D I+V+SVSCIYG+G+ E+Y  +++ L++G + ++  +L  LV  QY+R 
Sbjct: 123 SATTALLERRDVIIVASVSCIYGLGNPETYRDLVLSLRVGGTYDRDAILRKLVDIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD IEIFP++  + A RV +FG++++ + E   +TG+ +   + I ++
Sbjct: 183 DIDFSRGKFRVRGDVIEIFPANASERALRVELFGDEVDRLLEIDVVTGEILGQRQHIAVF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I+ EL+ RL EL    +LLEAQRL+QR  YDLEM+   G C 
Sbjct: 243 PASHFVTAEDNMKRAITTIEAELEQRLQELRAADKLLEAQRLQQRTQYDLEMMAEVGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGE P TL ++ PED LL +DESHV +PQI GMY GD  RK TL E+
Sbjct: 303 GIENYSRHLTGRAPGESPFTLLDFFPEDWLLIIDESHVAVPQIGGMYEGDRSRKTTLVEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       I VSATPG +E E  Q  IVEQIIRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLKFKEFEEKVNQVIYVSATPGKYEFEH-QEQIVEQIIRPTGLIDPEIF 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EI L  ++  R+L+T LTK+MAEDLT+Y  E  +RVRY+HS++ T+E
Sbjct: 422 IRPTKGQIDDLLGEIRLRVERDERVLVTTLTKKMAEDLTDYFKENGVRVRYLHSDIHTME 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS+ SLIQTIGRAAR
Sbjct: 482 RMEILRDLRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AI ET RRR+ Q+E+N+KHNI P+++++ I +VI+     +
Sbjct: 542 NAEGRVIMYADKMTDSMKKAIGETNRRRKIQMEYNRKHNITPETIRKAIRDVIEATRAAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                ++  ++   L+K + K  +  L K+M  +A +L FE AA++RD +  L+
Sbjct: 602 EKAPYVA-QSKAGKLTKTELKKMIAKLEKEMKESAKHLEFERAAQLRDALIELR 654


>gi|169830504|ref|YP_001716486.1| excinuclease ABC subunit B [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637348|gb|ACA58854.1| excinuclease ABC, B subunit [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 674

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/654 (54%), Positives = 462/654 (70%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AI  L++G+    + Q+LLGVTGSGKT+TMA+VI  +QRP +V+A
Sbjct: 4   FKLVSDYVPRGDQPQAIENLVRGLERGLRHQVLLGVTGSGKTYTMAQVISRVQRPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EFK FFP NAVEYFVSYYDYYQPEAY+P +D YIEK++SINE+ID++RH
Sbjct: 64  PNKTLAAQLCAEFKEFFPENAVEYFVSYYDYYQPEAYLPSSDMYIEKDASINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G  E Y  ++V L+     ++  +L  LV  QY+R 
Sbjct: 124 SATSSLFERRDVIIVASVSCIYGLGDPEEYRNLVVSLRRNGGYDRDAVLRKLVSIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+   + A R+  FG+++E I EF  LTG+ +   + + I 
Sbjct: 184 DINFGRGRFRVRGDVLEVFPAASGERALRIEFFGDEVERILEFDALTGEVLGERQHVSIL 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T +  L+ A+  I+ EL  RL EL    +LLEAQRLEQR  YDLEML   G C+
Sbjct: 244 PASHYATSKDRLDRAVTAIETELTERLAELRAANKLLEAQRLEQRTNYDLEMLRELGYCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PG PP TL +Y P+D L+ VDESH+TIPQI GMY GD  RK  L E+
Sbjct: 304 GIENYSRHLTGREPGAPPFTLLDYFPDDLLIIVDESHITIPQIGGMYEGDRSRKVALVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F E+       + VSATPG WEL+     +VEQI+RPTGLVDP + 
Sbjct: 364 GFRLPSAFDNRPLTFSEFMARVRQGVYVSATPGPWELKHSAA-VVEQIVRPTGLVDPEMV 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+  EI     +  R+L+T LTKRMAEDL +Y  E  ++VRY+HSE+ TLE
Sbjct: 423 VRPTRGQIDDLLGEIRQRVARNERVLVTTLTKRMAEDLCDYFRELGLKVRYLHSEINTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLD+PE  LVA+LDADKEG+LRS+ SLIQT GRAAR
Sbjct: 483 RMEILRDLRLGTFDVLVGINLLREGLDLPEVSLVAVLDADKEGYLRSERSLIQTAGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N KVILYAD IT S++ A+DET RRRE+Q+  N+ H I PQ+V++ +  VI+     +
Sbjct: 543 NLNGKVILYADQITGSMRRALDETERRRERQMAFNRAHGITPQTVQKAVRSVIEATRAAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 ++  ++L+ S+   K  +  L K M  AA +L FE AA++RD +  L+
Sbjct: 603 TQAPYYAVSEKRLTRSEL--KKLIARLEKDMRYAARHLEFERAAQLRDALIELR 654


>gi|290967948|ref|ZP_06559498.1| excinuclease ABC, B subunit [Megasphaera genomosp. type_1 str. 28L]
 gi|290782087|gb|EFD94665.1| excinuclease ABC, B subunit [Megasphaera genomosp. type_1 str. 28L]
          Length = 713

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/655 (54%), Positives = 467/655 (71%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   Y P+GDQP A+A L  GI S +  Q+LLG TG+GKT+TMAKVIEA+Q+P +V+A
Sbjct: 17  FHVVAPYAPTGDQPQAVASLTAGIRSGQWAQVLLGATGTGKTYTMAKVIEAVQKPTLVIA 76

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP+N V YFVSYYDYYQPEAY+  TDTYIEK+S+IN++ID++RH
Sbjct: 77  HNKTLAAQLCSEFKQFFPNNEVAYFVSYYDYYQPEAYIAATDTYIEKDSAINDEIDKLRH 136

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G  E YS+++V L++G   EQ E+L  LV  QY R 
Sbjct: 137 SATMSLFERRDVIIVASVSCIYGLGDPEDYSELVVSLRLGQEKEQTEILRKLVAVQYTRS 196

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            + + RGTFRV GD+IE+FP   ++   R+ MFG++IE ++E   LTG+ +   + + IY
Sbjct: 197 QMTLQRGTFRVLGDTIEVFPVSFDNTVVRIEMFGDEIERLTEVDALTGEVVAERKHVAIY 256

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +  +  A+  I+ EL  RL EL+++G+LLEAQRLEQR  YD+EM+   G C 
Sbjct: 257 PASHYVTTKEKMTRAVATIEAELAARLQELKRDGKLLEAQRLEQRTRYDIEMMMEMGYCS 316

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  GE P TL +Y PED L+ VDESHVT+PQ+  MY GD  RK  L EY
Sbjct: 317 GIENYSRHLAGRKAGETPYTLLDYFPEDYLIMVDESHVTLPQLRAMYAGDRSRKENLIEY 376

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       I VSATPG +E+E     +  QIIRPTGL DP +E
Sbjct: 377 GFRLPSALDNRPLRFEEFVERINQIIYVSATPGPYEMEAATN-VAHQIIRPTGLTDPTIE 435

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI L  ++  R+L+T LTK+MAEDLTEY+ E  +R+RY+HS++ T  
Sbjct: 436 VRPIAGQLDDLLGEIRLRTERKERVLVTTLTKKMAEDLTEYMREMGVRIRYLHSDIATFA 495

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T+ IQT+GRAAR
Sbjct: 496 RAEIIRDLRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSYTAFIQTMGRAAR 555

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD +T S++ AI ET RRR  Q  +NK+H+I PQ+VK+   EV+D I L  
Sbjct: 556 NARGKVIMYADRMTDSMRRAIAETARRRAVQEAYNKEHHIVPQTVKK---EVVDLIELTK 612

Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A       AQQ + L+ +  +  ++++ +QM+ A   L FE+AA +RD +  L+
Sbjct: 613 VAEAPRPYGAQQEAPLTPEALQKVIRTVTRQMNEAVKQLKFEQAAVLRDRLGSLR 667


>gi|322412040|gb|EFY02948.1| excinuclease ABC subunit B [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 663

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/654 (53%), Positives = 474/654 (72%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVINKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ I  V+ + ++
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKTIGEVDHLILF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  ++  I+ EL+ +L   E EG+LLEAQRL QR  YD+EML   G   
Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELEDQLKVFEAEGKLLEAQRLRQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR  GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 310 GVENYSRHMDGRAAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ    IVEQIIRPTGL+DP ++
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTD-TIVEQIIRPTGLLDPEID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  Q++D+  EIN   ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPSMGQMDDLLGEINQRVERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD +T+S+Q AIDET RRRE Q+ +N+ H I PQ++K+ I ++I      +
Sbjct: 549 NADGHVIMYADKVTESMQRAIDETARRREIQMAYNETHGIIPQTIKKDIRDLISISKAAE 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +     ++D + +S S++  K  +K+L+KQM  AA+ L+FE AA+IRD I  LK
Sbjct: 609 SDVAETAVDYETMSRSER--KEAIKTLQKQMQEAAELLDFEMAAQIRDMILELK 660


>gi|301794321|emb|CBW36746.1| UvrABC system protein B (UvrB protein) [Streptococcus pneumoniae
           INV104]
          Length = 662

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/662 (54%), Positives = 479/662 (72%), Gaps = 5/662 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           NH  D   F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  +
Sbjct: 3   NHITD-NQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKV 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N
Sbjct: 62  NKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           ++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ L
Sbjct: 122 DEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDL 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ + 
Sbjct: 182 VDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLG 241

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V+ + I+  +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EM
Sbjct: 242 EVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEM 301

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G    +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  
Sbjct: 302 LREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRS 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  YGFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPT
Sbjct: 362 RKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP VE+R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YM
Sbjct: 421 GLLDPEVEVRPTMGQIDDLLGEINARIEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LI
Sbjct: 481 HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H+I PQ++K++I ++
Sbjct: 541 QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMTYNEEHDIVPQTIKKEIRDL 600

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           I  +    A   +  +D    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  
Sbjct: 601 I-AVTKAVAKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLE 657

Query: 793 LK 794
           +K
Sbjct: 658 VK 659


>gi|149012289|ref|ZP_01833358.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP19-BS75]
 gi|168484866|ref|ZP_02709811.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC1873-00]
 gi|168491159|ref|ZP_02715302.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC0288-04]
 gi|168493160|ref|ZP_02717303.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC3059-06]
 gi|194396794|ref|YP_002037839.1| excinuclease ABC subunit B [Streptococcus pneumoniae G54]
 gi|225859033|ref|YP_002740543.1| excinuclease ABC subunit B [Streptococcus pneumoniae 70585]
 gi|226698341|sp|B5E4X3|UVRB_STRP4 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|254764910|sp|C1C7L7|UVRB_STRP7 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|147763615|gb|EDK70550.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP19-BS75]
 gi|172041982|gb|EDT50028.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC1873-00]
 gi|183574497|gb|EDT95025.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC0288-04]
 gi|183576633|gb|EDT97161.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC3059-06]
 gi|194356461|gb|ACF54909.1| excinuclease ABC, B subunit [Streptococcus pneumoniae G54]
 gi|225719975|gb|ACO15829.1| excinuclease ABC, B subunit [Streptococcus pneumoniae 70585]
 gi|332201701|gb|EGJ15771.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA47368]
          Length = 662

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/663 (54%), Positives = 479/663 (72%), Gaps = 5/663 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           NH  D   F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  +
Sbjct: 3   NHITD-NQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKV 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N
Sbjct: 62  NKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           ++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ L
Sbjct: 122 DEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDL 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ + 
Sbjct: 182 VDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLG 241

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V+ + I+  +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EM
Sbjct: 242 EVDHLAIFPATHFVTNDDHMEVAVAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEM 301

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G    +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  
Sbjct: 302 LREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRS 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  YGFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPT
Sbjct: 362 RKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP VE+R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YM
Sbjct: 421 GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LI
Sbjct: 481 HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++
Sbjct: 541 QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL 600

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           I  +    A   +  +D    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  
Sbjct: 601 I-AVTKAVAKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLE 657

Query: 793 LKS 795
           +K+
Sbjct: 658 VKA 660


>gi|332359692|gb|EGJ37509.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK355]
          Length = 662

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN+  ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINVRVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SLSK++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLSKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|225860928|ref|YP_002742437.1| excinuclease ABC subunit B [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229892|ref|ZP_06963573.1| excinuclease ABC subunit B [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254352|ref|ZP_06977938.1| excinuclease ABC subunit B [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502764|ref|YP_003724704.1| excinuclease ABC subunit B [Streptococcus pneumoniae TCH8431/19A]
 gi|254764915|sp|C1CR65|UVRB_STRZT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|225726381|gb|ACO22232.1| excinuclease ABC, B subunit [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238359|gb|ADI69490.1| excinuclease ABC subunit B [Streptococcus pneumoniae TCH8431/19A]
 gi|327389474|gb|EGE87819.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA04375]
          Length = 662

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K+   E+ D I +  
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKK---EIRDLIAVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A +     +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVSKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|312793615|ref|YP_004026538.1| excinuclease ABC subunit B [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180755|gb|ADQ40925.1| excinuclease ABC, B subunit [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 661

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/663 (56%), Positives = 490/663 (73%), Gaps = 17/663 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+GDQP AI  L +GI   EK Q LLGVTGSGKTFTMAKVIE +QRP +V+A
Sbjct: 4   FKLVSDFKPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSINE+ID++RH
Sbjct: 64  HNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +GS E Y  + + L++G   ++ E++  L++ QY+R 
Sbjct: 124 SATSALFERRDVIIVASVSCIYSLGSPEDYLNLTISLRLGMIKDRDEVIRELIRMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+   D A R+  FG++IE I+EF  +TG+ I     + I+
Sbjct: 184 DIDFRRGRFRVRGDVLEVFPASNTDRAIRIEFFGDEIERITEFDVVTGEVIGRRNHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    L  A+K I+EEL+ RL EL   G+L+EAQRLEQR  YD+EML+  G C+
Sbjct: 244 PASHYVTTAEKLKRAIKSIEEELEQRLKELRSMGKLVEAQRLEQRTRYDIEMLQEMGFCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR+PG PP TL +Y P+D ++F+DESHVTIPQ+  MY GD  RK TL EY
Sbjct: 304 GIENYSRHLTGRSPGSPPYTLLDYFPKDFIMFIDESHVTIPQVRAMYNGDKARKDTLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I VSATPG +EL++    IVEQIIRPTGLVDP +E
Sbjct: 364 GFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYELKKSSR-IVEQIIRPTGLVDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +   + Q++ +  EI    ++  R+L+T LTK+MAE LTEYL +  IRVRYMHS++ T+E
Sbjct: 423 VHPVQGQIDHLIGEIRKRVEKNQRVLVTTLTKKMAESLTEYLKDVGIRVRYMHSDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ KVI+YAD IT ++Q AIDET RRR+ Q+E+N+KH I PQ+V++ I ++I+      
Sbjct: 543 NVDGKVIMYADRITNAMQRAIDETNRRRKIQIEYNQKHGIIPQTVRKGIRQIIE------ 596

Query: 741 AATTNISIDAQQL---------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            AT +++ + ++          +++K++ + ++K L ++M   A  L FE+AA++RD+I 
Sbjct: 597 -ATVSVAEEEEKYEVVEKEIVENMTKEEIEEYIKELEQEMKKFAIELEFEKAAKVRDKIF 655

Query: 792 RLK 794
            LK
Sbjct: 656 ELK 658


>gi|156934731|ref|YP_001438647.1| excinuclease ABC subunit B [Cronobacter sakazakii ATCC BAA-894]
 gi|156532985|gb|ABU77811.1| hypothetical protein ESA_02566 [Cronobacter sakazakii ATCC BAA-894]
          Length = 691

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/664 (55%), Positives = 475/664 (71%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI ++ +G+      Q LLGVTGSGKTFTMA VI  +QRP +V+A
Sbjct: 23  FKLNSAFKPSGDQPEAIRRIKEGLEDGLAHQTLLGVTGSGKTFTMANVIADLQRPTMVLA 82

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 83  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 142

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 143 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLTELQYTRN 202

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTG     ++   +Y
Sbjct: 203 DQAFQRGTFRVRGEVIDIFPAESDELALRVELFDEEVERLSLFDPLTGTVDSIIQRFTVY 262

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 263 PKTHYVTPRERIVQAMEEIKVELAERRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 322

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 323 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 382

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P T+ VSATPG++ELE+  G I++Q++RPTGL+DP +E
Sbjct: 383 GFRLPSALDNRPLKFEEFEALAPQTVYVSATPGNYELEKSGGEIIDQVVRPTGLLDPIIE 442

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI        R+L+T LTKRMAEDLTEYL E   +VRY+HS++ T+E
Sbjct: 443 VRPVATQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 502

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 503 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 562

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++   L E+
Sbjct: 563 NVNGKAILYGDKITPSMAKAIGETERRREKQQAYNEEHGIVPQGLNKKVVDIL--ALGEN 620

Query: 741 AATTNISIDAQQLSL----------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T      +  ++          + K  +  +  L  QM   A NL FEEAA++RD++
Sbjct: 621 IAKTKPKGRGKGRTVADAEAAELALTPKALQQKIHQLEAQMVQHAQNLEFEEAAQLRDKL 680

Query: 791 KRLK 794
            +L+
Sbjct: 681 HQLR 684


>gi|289168043|ref|YP_003446312.1| excinuclease ABC-subunit B [Streptococcus mitis B6]
 gi|288907610|emb|CBJ22447.1| excinuclease ABC-subunit B [Streptococcus mitis B6]
          Length = 662

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   E EG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQTELEEQLAVFENEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I  +    
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-AVTKAV 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A   N  +D    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 608 AKEENKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|209695340|ref|YP_002263269.1| excinuclease ABC subunit B [Aliivibrio salmonicida LFI1238]
 gi|226698331|sp|B6EGH8|UVRB_ALISL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|208009292|emb|CAQ79558.1| UvrABS system protein B (excinuclease ABC subunit B) [Aliivibrio
           salmonicida LFI1238]
          Length = 676

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/669 (52%), Positives = 482/669 (72%), Gaps = 17/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ +DY P+GDQP AI  L +G+ +    Q LLGVTGSGKTFT+A VI    RP ++MA
Sbjct: 5   YELVSDYQPAGDQPQAIKTLNEGLENGLAHQTLLGVTGSGKTFTLANVIAKSGRPTVIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYFVSY+DYYQPEAYVP TDT+IEK+SS+NE I++MR 
Sbjct: 65  HNKTLAAQLYGEMKAFFPNNAVEYFVSYFDYYQPEAYVPTTDTFIEKDSSVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+++SVS IYG+G  ++Y  M++ L  GD + Q+++L  L + QYKR 
Sbjct: 125 SATKALLERKDAIIIASVSAIYGLGDPQAYLSMMLHLSRGDIINQRDILRRLAELQYKRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RGTFRV G+ +++FP+  E  A R+ +F +++E IS+F PLTG  I +++    I
Sbjct: 185 DMAFERGTFRVRGEVLDVFPAESEHEAIRIELFDDEVERISKFDPLTGSIITKDMPRCTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK +L  R  EL    +L+E QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPREKVLDAIEQIKVDLAERKKELLANNKLVEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GE PPTLF+Y+P+D LL +DESH+T+ QI  MY+GD  RK  L E
Sbjct: 305 SGIENYSRYLSGRPQGEAPPTLFDYLPKDGLLIIDESHITVSQIGAMYKGDRSRKENLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP+RF+E+    P TI VSATPG +E+E+    I EQ++RPTGL+DP +
Sbjct: 365 YGFRLPSALDNRPMRFDEFEARAPQTIYVSATPGKYEIEKSGSDIAEQLVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI +  + G R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T+
Sbjct: 425 EVRPVGTQVDDLLSEIRIRTKVGERVLVTTLTKRMSEDLTEYLAEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQ IGRAA
Sbjct: 485 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQAIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K ILYAD IT S++ AI ET RRREKQ+ HN+   I P ++K+ + ++++   L 
Sbjct: 545 RNLEGKAILYADRITGSMEKAIGETERRREKQILHNEALGIVPTALKKNVADILE---LG 601

Query: 740 DAATTNISIDAQQLSLSK--KKGKAH-----------LKSLRKQMHLAADNLNFEEAARI 786
           D       I A ++ LS+  ++G ++           ++ L  +M+  A +L FE+AA++
Sbjct: 602 DMTKNKRKIVAPKMKLSEVAEEGASYQSMTPQQLEKEVQRLEAKMYQHARDLEFEQAAKV 661

Query: 787 RDEIKRLKS 795
           RDE+++L++
Sbjct: 662 RDEVEKLRN 670


>gi|322376794|ref|ZP_08051287.1| excinuclease ABC subunit B [Streptococcus sp. M334]
 gi|321282601|gb|EFX59608.1| excinuclease ABC subunit B [Streptococcus sp. M334]
          Length = 662

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 476/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNELVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I  +    
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-AVTKAV 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A   +  +D    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 608 AKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|118581885|ref|YP_903135.1| excinuclease ABC subunit B [Pelobacter propionicus DSM 2379]
 gi|118504595|gb|ABL01078.1| Excinuclease ABC subunit B [Pelobacter propionicus DSM 2379]
          Length = 701

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/694 (51%), Positives = 479/694 (69%), Gaps = 37/694 (5%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F ++TDY P GDQPAAIA+L++GI   ++ Q+LLGVTGSGKTFT+A VI    RPA+
Sbjct: 1   MSIFTLKTDYTPRGDQPAAIAELVEGIERGDQHQVLLGVTGSGKTFTVANVIARTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++APNK LAAQLY+E K  FP NAVE+FVSYYDYYQPEAY+P +DT+IEK+S+IN++ID+
Sbjct: 61  LLAPNKTLAAQLYAEMKELFPDNAVEFFVSYYDYYQPEAYLPSSDTFIEKDSAINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSATRSLL R D I+V+SVSCIYGIGS E+Y+ + +  + G+   +  LL  LV  QY
Sbjct: 121 MRHSATRSLLTRRDVIIVASVSCIYGIGSPEAYASLHIFFRQGEEYGRDTLLQKLVAIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D    RGTFRV GD +E+FP++  D A R+  FG+++E ISE  PL G  ++ +   
Sbjct: 181 ERNDTDFHRGTFRVRGDVVEVFPAYDSDKALRIEFFGDEVESISEIDPLRGAVLQRLTKC 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SHYV  R TL  A++ I+ +L  R+    +   LLEAQR+EQR  +D+EM+E  G
Sbjct: 241 TIYPASHYVATRETLERAVEQIRVDLGERIRYFRENNMLLEAQRIEQRTFFDIEMMEEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSRY  GR  GEPP TL +Y P+D +L+VDESH++IPQ+ GMYRGD  RK TL
Sbjct: 301 FCQGIENYSRYFDGRETGEPPYTLIDYFPDDFVLYVDESHISIPQVGGMYRGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLP+ +DNRPL F E+       + VSATP  +ELE+  G+ VEQ+IRPTGL+DP
Sbjct: 361 VNYGFRLPAALDNRPLNFREFEARVHQAVYVSATPADYELEKSNGVFVEQVIRPTGLLDP 420

Query: 558 PVEIRSART-----------------------------------QVEDVYDEINLAAQQG 582
            +++R                                       QV+D+  E+     +G
Sbjct: 421 VIQVRPVTAGRQIPPSPPLKKGDLPSGDDEYPPFEKGGAGGMYGQVDDLLHEVRQTVAKG 480

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R+L+T LTKRMAE+LT Y  E  +R+RY+HS++ T+ER++I+RDLR+G+FDVLVGINLL
Sbjct: 481 ERVLVTTLTKRMAEELTSYYGELGVRIRYLHSDIVTIERMQILRDLRMGEFDVLVGINLL 540

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           REGLD+PE  LVAILDADKEGFLRS+ SLIQT GRAARN N +V++YAD+IT+S+Q  ID
Sbjct: 541 REGLDLPEVSLVAILDADKEGFLRSERSLIQTCGRAARNANGRVLMYADSITRSMQACID 600

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI--DAQQLSLSKKKG 760
           ET RRREKQL  N++H I P++V++ +  ++  I  +D  T  +S     ++  ++ K  
Sbjct: 601 ETQRRREKQLAWNQEHGITPETVRKSMQTILGSIEEKDYYTPKVSAAETPEEYGVAPKDI 660

Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              +K LRK+M  AA  L+FE+AA +RD ++ L+
Sbjct: 661 PKLVKKLRKEMLGAAKQLDFEKAAELRDRVRTLE 694


>gi|315613251|ref|ZP_07888161.1| excision endonuclease subunit UvrB [Streptococcus sanguinis ATCC
           49296]
 gi|315314813|gb|EFU62855.1| excision endonuclease subunit UvrB [Streptococcus sanguinis ATCC
           49296]
          Length = 662

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 476/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I  +    
Sbjct: 549 NSEGHVIMYADTMTQSMQKAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-AVTKAV 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A   +  +D    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 608 AKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|296164512|ref|ZP_06847083.1| excision endonuclease subunit UvrB [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295900112|gb|EFG79547.1| excision endonuclease subunit UvrB [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 743

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/690 (52%), Positives = 476/690 (68%), Gaps = 30/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I + E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 52  FEVVSPHAPAGDQPAAIDELERRIRAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 111

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 112 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 171

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ +SY    V+L +G  V +  LL  LV  QY R 
Sbjct: 172 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVELSVGTEVPRDALLRLLVDVQYTRN 231

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG+++E +   +PLTG  IR V++++I+
Sbjct: 232 DLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEVEALYYLHPLTGDVIRQVDSLRIF 290

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 291 PATHYVAGPERMAHAISTIEEELAARLAELEGQGKLLEAQRLRMRTNYDIEMMRQVGFCS 350

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 351 GIENYSRHIDGRGPGSPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEY 410

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 411 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQAGGEFVEQVIRPTGLVDPKVV 470

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI        R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 471 VKPTKGQIDDLIGEIRKRTDADERVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 530

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 531 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 590

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD+IT S++ AIDET RRR KQ+ +N+ H I+PQ +++KI +++D +  E 
Sbjct: 591 NVSGEVHMYADSITDSMKEAIDETERRRAKQIAYNEAHGIDPQPLRKKIADILDQVYREA 650

Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773
             T  + +     + S+ +      G+A                      +K L +QM  
Sbjct: 651 DDTETVGVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTASMPRAELADLIKDLTEQMMA 710

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE AAR RDEI  LK     +G+D
Sbjct: 711 AARDLQFELAARFRDEIADLKKE--LRGMD 738


>gi|89256132|ref|YP_513494.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314605|ref|YP_763328.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502154|ref|YP_001428219.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167009835|ref|ZP_02274766.1| excinuclease ABC, B subunit [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254369136|ref|ZP_04985148.1| DNA excision repair enzyme [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953268|ref|ZP_06557889.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313510|ref|ZP_06804105.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89143963|emb|CAJ79184.1| DNA excision repair enzyme, subunit B (UvrABC system protein B)
           [Francisella tularensis subsp. holarctica LVS]
 gi|115129504|gb|ABI82691.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156252757|gb|ABU61263.1| excinuclease ABC, B subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157122086|gb|EDO66226.1| DNA excision repair enzyme [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 668

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/660 (53%), Positives = 476/660 (72%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T Y P+GDQP AI  L+ GI++  + Q+LLGVTGSGKT+TMA VI+  Q+P +++A
Sbjct: 4   FNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK +FP N VEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++MR 
Sbjct: 64  HNKTLAAQLYSEFKQYFPDNVVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY R 
Sbjct: 124 SATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +K++++    I+
Sbjct: 184 DMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRATIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            ++HYV  +      ++ IK+ELK R+   +KEG+LLEAQR+EQR  YD+EM++  G C 
Sbjct: 244 PSTHYVASKERKEIVIEDIKKELKERVKYFKKEGKLLEAQRIEQRTKYDIEMIQELGYCT 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RK+ L  Y
Sbjct: 304 GIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   V+Q+IRPTGL+DP V 
Sbjct: 364 GFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDPEVF 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QVED   EIN A  +  R+L+T LTK+M E+LTEYL E  + VRY+HS++ T+E
Sbjct: 423 VRPVAIQVEDALSEINKAIAKEERVLITTLTKKMVENLTEYLSEHGVNVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQ IGR AR
Sbjct: 483 RVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQAIGRVAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738
           N N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D  P + 
Sbjct: 543 NQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSPEMQ 602

Query: 739 EDAATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + A   N+ +    + +S   G       +K+L K+M   A  L FE+A  IRD+I  +K
Sbjct: 603 KRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKITEIK 662


>gi|218885558|ref|YP_002434879.1| excinuclease ABC subunit B [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|226695482|sp|B8DJT9|UVRB_DESVM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|218756512|gb|ACL07411.1| excinuclease ABC, B subunit [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 680

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/670 (53%), Positives = 466/670 (69%), Gaps = 21/670 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++TDY P GDQP AI Q++  I +    Q+LLGVTGSGKTFTMA+VI    RPA+V+A
Sbjct: 6   FILRTDYEPRGDQPEAIGQIVSNIEAGVTDQVLLGVTGSGKTFTMAQVIARCGRPALVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+EF+  FP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ ID++RH
Sbjct: 66  PNKTLAAQLYNEFRQLFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDNIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R D ++V+SVSCIYG+GS E Y+++++ ++ G  +    L++ LV+ QY+R 
Sbjct: 126 AATHALLTRRDVVIVASVSCIYGLGSPEYYAKLVIPVETGQRLSMDALITRLVEVQYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD +EI P++  + A R+  FG+DI+ ISE  PLTGQ + +V    IY
Sbjct: 186 DYDFHRGTFRVRGDVLEIIPAYHHERALRIEFFGDDIDAISEIDPLTGQVLASVGKTVIY 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV+ R  L  A+  I++EL  RL EL+   RL+EAQRLEQR   DLEM+E  G C 
Sbjct: 246 PASHYVSDRDNLVRAISDIRDELGERLRELKGGNRLVEAQRLEQRTMLDLEMMEEMGYCN 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L GR  G+PP  L +Y P+D LLFVDESH+T+ Q+  MY+GD  RK+TL +Y
Sbjct: 306 GVENYSRHLDGRKAGDPPSCLLDYFPDDFLLFVDESHITVSQVGAMYKGDRSRKSTLVDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       I VSATPG WEL++ QGI+ EQIIRPTGLVDP  E
Sbjct: 366 GFRLPSALDNRPLEFHEFLARLNQAIYVSATPGKWELDRSQGIVAEQIIRPTGLVDPITE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + QV+D+  E  L A +  R+L+T LTKRMAEDLTEY  E  +  RY+HS++ T+E
Sbjct: 426 VRPTKGQVDDLLGECRLRAARDERVLVTTLTKRMAEDLTEYFNEMGVAARYLHSDIDTME 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ II+ LR  +FDVLVGINLLREGLDIPE  LV+ILDADKEGFLRS  SLIQT GRAAR
Sbjct: 486 RMAIIQALRRKEFDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSAGSLIQTFGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739
           NV  +V++YAD +T+S+Q A+DET RRRE+Q  +N+ H+I P ++++ +    D I  E 
Sbjct: 546 NVEGRVLMYADVVTRSMQAAMDETARRRERQTGYNEAHHIVPATIRKAVETPFDAIYAEA 605

Query: 740 ---------------DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
                           AA T     +    L+K+     ++ L + M  AA  L FE AA
Sbjct: 606 AEAKGRKGKGRKGAAQAAETFAPWSSDPHELAKQ-----IQQLERDMREAAKELEFERAA 660

Query: 785 RIRDEIKRLK 794
            +RD I+ L+
Sbjct: 661 ELRDRIRLLR 670


>gi|327330664|gb|EGE72410.1| excinuclease ABC subunit B [Propionibacterium acnes HL097PA1]
          Length = 701

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/690 (52%), Positives = 487/690 (70%), Gaps = 29/690 (4%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + + ++ +  F + +++ PSGDQP AIA+L K ++S E+  +LLG TG+GKT T+A + E
Sbjct: 4   VTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWLAE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VM PNK LAAQ   E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS
Sbjct: 64  RLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +NE+++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y   ++ L++G   ++ ELL 
Sbjct: 124 LNEEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDELLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV  QY R DI   RGTFRV GD++EIFP + E+ A RV  FG++IE ++  +PLTG  
Sbjct: 184 DLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTGGI 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I   E + ++  +HYV     +  A+  I++EL+ RL  LE++G+LLEAQRL  R TYD+
Sbjct: 243 ISEDEQVYVFPATHYVAGPERMERAIASIQQELEERLAVLERDGKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM++  G+C  IENYSR++ GR PG  P  L +Y PED +L +DESHVT+PQI GMY GD
Sbjct: 303 EMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL E+GFRLPS MDNRPL+F+E+      T+ +SATPGS+E E+  G+ VEQIIR
Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERANGV-VEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++  R Q++D+  EI     +G R+L+T LTK+MAEDLT+YL E  IR R
Sbjct: 422 PTGLVDPEIIVKPTRGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIRTR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ S
Sbjct: 482 YLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++KI 
Sbjct: 542 LIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKKIG 601

Query: 731 EVIDPILLEDAATTNI----------------------SIDAQQLSLSKKK----GKAHL 764
           ++ + +  E A T  +                      +   ++L +SK      GK  +
Sbjct: 602 DITEMLAREGADTDELVEKFNYGKGHRGYDSMITDEQRAAQGRRLDVSKMAEEDLGKL-I 660

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L  +M  AA  L FE AAR+RDEI  LK
Sbjct: 661 VDLTTEMRSAAGELKFEVAARLRDEIADLK 690


>gi|225677199|ref|ZP_03788193.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590759|gb|EEH11992.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 588

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/585 (58%), Positives = 440/585 (75%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI  L+ G++S ++ Q+LLGVTGSGKTFTMA VI    RPA++MA
Sbjct: 3   FQIATRFQPAGDQPQAIDSLIAGLNSNKRDQVLLGVTGSGKTFTMANVIARTNRPALIMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K  FPHNAVEYF+SYYDYYQPEAY+P+TDTYIEK+S+INE+I+ +R+
Sbjct: 63  HNKTLAAQLYEEMKGLFPHNAVEYFISYYDYYQPEAYLPQTDTYIEKDSAINERIEMLRY 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S   SLLER D IVV+SVSCIYG+GS ESY  MI+ L +G+ +   + LS+L   QYKR 
Sbjct: 123 STVCSLLERRDTIVVASVSCIYGLGSPESYRSMIIPLSVGNKIRINDFLSNLTDLQYKRS 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD ++IFPSH E+ AWR+S+FG++IEEISE   +TG   + V  I I+
Sbjct: 183 DARFERGYFRVRGDIVDIFPSHYENKAWRLSLFGDEIEEISEVDAITGNVTKGVNKITIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NS+Y+TPR  L  A++ +K+EL  RL     + +++EA+RLEQR  +D+EM+ TTG C+
Sbjct: 243 PNSYYITPREALLQAIELVKKELHERLDYYYSQNKIVEAKRLEQRTNFDIEMMRTTGICK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL G   G+PPPTLFEY+P++ +LFVDESHVT+PQ+  MY G+  RK  L +Y
Sbjct: 303 GIENYSRYLYGMEAGDPPPTLFEYLPKEVILFVDESHVTVPQVGAMYSGNEARKKKLIDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F EW  +RP T+ +SATPG +EL +   + +EQ+IRPTGL DP   
Sbjct: 363 GFRLPSAFDNRPLKFGEWEGVRPQTVYISATPGKYELAKTSNVFIEQVIRPTGLTDPICI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  ++Q++DV  E  +   +G  +L+T LTK+MAE+L EY+ E N++V Y+HS++  LE
Sbjct: 423 VKPIKSQIDDVIHEAQVTIGKGFCVLITTLTKKMAENLAEYMSELNMKVSYLHSDIGALE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII  LR  + DVLVG+NLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RIEIICKLRSKEIDVLVGVNLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           N   +VILYAD IT S+  A+ ET RRR+KQ  HN  HNI P+++
Sbjct: 543 NAEGRVILYADKITGSLDRALKETERRRKKQEVHNILHNIVPKTI 587


>gi|332523810|ref|ZP_08400062.1| excinuclease ABC, B subunit [Streptococcus porcinus str. Jelinkova
           176]
 gi|332315074|gb|EGJ28059.1| excinuclease ABC, B subunit [Streptococcus porcinus str. Jelinkova
           176]
          Length = 663

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/654 (53%), Positives = 473/654 (72%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP AIA+L+  I   EK Q+LLG TG+GKTFTM++VI  + +P +V+A
Sbjct: 10  FHLVSKYQPSGDQPQAIAELVDNIEGGEKAQILLGATGTGKTFTMSQVINQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ +   E + ++
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKVLGEAEHLVLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  ++  I+ EL+ +L   E EG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDEHMEASIAKIQAELEEQLQLFESEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 310 GVENYSRHMDGRSAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+ Q   +I EQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMAQTDTVI-EQIIRPTGLLDPIIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  Q++D+  EIN  + +G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPSMGQMDDLLGEINTRSAKGERCFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S+Q AIDET RRR  Q+ +N+KH I PQ++K+ I ++I   + + 
Sbjct: 549 NSEGRVIMYADKMTDSMQKAIDETARRRHIQMAYNEKHGIVPQTIKKDIRDLI--AITKG 606

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             + ++       S+++ + K  +K L+KQM  AA+ L+FE AA IRD I  LK
Sbjct: 607 TGSESVEESTDYASMNRTERKEAIKKLQKQMQEAAELLDFELAAEIRDLILELK 660


>gi|306829598|ref|ZP_07462788.1| excision endonuclease subunit UvrB [Streptococcus mitis ATCC 6249]
 gi|304428684|gb|EFM31774.1| excision endonuclease subunit UvrB [Streptococcus mitis ATCC 6249]
          Length = 662

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 476/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   E+EG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEREGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I  +    
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-AVTKAV 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A   +  +D    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 608 AKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|269797771|ref|YP_003311671.1| excinuclease ABC subunit B [Veillonella parvula DSM 2008]
 gi|269094400|gb|ACZ24391.1| excinuclease ABC, B subunit [Veillonella parvula DSM 2008]
          Length = 725

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/687 (53%), Positives = 482/687 (70%), Gaps = 40/687 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P+GDQP AI  L +GI   E  Q+LLG TG+GKTFTMAKVIEA+Q+P +++A
Sbjct: 14  FKVEAPFTPTGDQPTAIQSLTEGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKPTLIIA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++ID++RH
Sbjct: 74  HNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEIDKLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G  E YS +++ L++G +  + E+LS LV  QY R 
Sbjct: 134 SATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQTKSRDEILSKLVDIQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  IRGTFRV GD+I+IFP+   + A RV +FG++I+ + E   LTG+ I   + + +Y
Sbjct: 194 DMNFIRGTFRVQGDTIDIFPAAYSERAIRVELFGDEIDRLVEVDSLTGEVIAERKHVAVY 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +  +N A++ I+ EL  +L +L+   RLLEAQRLEQR  YD+EM++  G C 
Sbjct: 254 PASHYVTTKEKMNIAVERIEAELDEQLAKLKAADRLLEAQRLEQRTRYDIEMMQEMGYCS 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++ R  GE P TL +Y P+D L+ VDESHVT+PQI  MY GD  RK +L EY
Sbjct: 314 GIENYSRHMSERKAGEAPFTLIDYFPDDFLIMVDESHVTMPQIRAMYNGDRARKESLIEY 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       + VSATPG +E+E  +  I EQIIRPTGL+DP +E
Sbjct: 374 GFRLPSALDNRPLQFDEFVERINQIVYVSATPGPYEME-VETNIAEQIIRPTGLLDPSIE 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EI+  A +  R+L+T LTK+MAEDLTE+L E  +RVRY+HS++ T+E
Sbjct: 433 IRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSDIVTIE 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T++IQTIGRAAR
Sbjct: 493 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN  VI+YAD +T S+Q AIDET RRR  Q  +N +HNI P+SV + + E+I+   +E+
Sbjct: 553 NVNGHVIMYADRVTGSMQRAIDETDRRRAVQEAYNIEHNITPKSVSKDVKELIELTKIEE 612

Query: 741 AATTNISIDAQQLSLSKKKGK----------AH-----------------------LKSL 767
              T      +   LS KKGK           H                       ++ L
Sbjct: 613 DMVT------EGKGLSPKKGKQKKSSEGMDHGHESYVQDTSAPKVADITLEELYNKIEEL 666

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLK 794
            +QM  AA  L FE AA++RD++  L+
Sbjct: 667 DRQMKAAAKQLEFESAAKLRDQLGVLR 693


>gi|313827874|gb|EFS65588.1| excinuclease ABC subunit B [Propionibacterium acnes HL063PA2]
 gi|315108277|gb|EFT80253.1| excinuclease ABC subunit B [Propionibacterium acnes HL030PA2]
          Length = 701

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/690 (52%), Positives = 488/690 (70%), Gaps = 29/690 (4%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + + ++ +  F + +++ PSGDQP AIA+L K ++S E+  +LLG TG+GKT T+A + E
Sbjct: 4   VTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWLAE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VM PNK LAAQ   E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS
Sbjct: 64  RLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +N++++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y   ++ L++G   ++ ELL 
Sbjct: 124 LNKEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDELLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV  QY R DI   RGTFRV GD++EIFP + E+ A RV  FG++IE ++  +PLTG+ 
Sbjct: 184 DLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTGEI 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I   E + ++  +HYV     +  A+  I++EL+ RL  LE++G+LLEAQRL  R TYD+
Sbjct: 243 ISEDEQVYVFPATHYVAGPERMERAIASIQQELEERLAVLERDGKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM++  G+C  IENYSR++ GR PG  P  L +Y PED +L +DESHVT+PQI GMY GD
Sbjct: 303 EMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL E+GFRLPS MDNRPL+F+E+      T+ +SATPGS+E E+  G+ VEQIIR
Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERVHGV-VEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++  R Q++D+  EI     +G R+L+T LTK+MAEDLT+YL E  IR R
Sbjct: 422 PTGLVDPEIIVKPTRGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIRTR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ S
Sbjct: 482 YLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++KI 
Sbjct: 542 LIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKKIG 601

Query: 731 EVIDPILLEDAATTNI----------------------SIDAQQLSLSKKK----GKAHL 764
           ++ + +  E A T  +                      +   ++L +SK      GK  +
Sbjct: 602 DITEMLAREGADTDELVEKFNYGKGHRGYNSMITDEQRAAQGRRLDVSKMAEEDLGKL-I 660

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L  +M  AA  L FE AAR+RDEI  LK
Sbjct: 661 VDLTTEMRSAAGELKFEVAARLRDEIADLK 690


>gi|289427109|ref|ZP_06428825.1| excinuclease ABC, B subunit [Propionibacterium acnes J165]
 gi|295130375|ref|YP_003581038.1| excinuclease ABC, B subunit [Propionibacterium acnes SK137]
 gi|289159578|gb|EFD07766.1| excinuclease ABC, B subunit [Propionibacterium acnes J165]
 gi|291376000|gb|ADD99854.1| excinuclease ABC, B subunit [Propionibacterium acnes SK137]
 gi|313764686|gb|EFS36050.1| excinuclease ABC subunit B [Propionibacterium acnes HL013PA1]
 gi|313772455|gb|EFS38421.1| excinuclease ABC subunit B [Propionibacterium acnes HL074PA1]
 gi|313791735|gb|EFS39846.1| excinuclease ABC subunit B [Propionibacterium acnes HL110PA1]
 gi|313802181|gb|EFS43413.1| excinuclease ABC subunit B [Propionibacterium acnes HL110PA2]
 gi|313807290|gb|EFS45777.1| excinuclease ABC subunit B [Propionibacterium acnes HL087PA2]
 gi|313815753|gb|EFS53467.1| excinuclease ABC subunit B [Propionibacterium acnes HL059PA1]
 gi|313818336|gb|EFS56050.1| excinuclease ABC subunit B [Propionibacterium acnes HL046PA2]
 gi|313820098|gb|EFS57812.1| excinuclease ABC subunit B [Propionibacterium acnes HL036PA1]
 gi|313823093|gb|EFS60807.1| excinuclease ABC subunit B [Propionibacterium acnes HL036PA2]
 gi|313825631|gb|EFS63345.1| excinuclease ABC subunit B [Propionibacterium acnes HL063PA1]
 gi|313830710|gb|EFS68424.1| excinuclease ABC subunit B [Propionibacterium acnes HL007PA1]
 gi|313838508|gb|EFS76222.1| excinuclease ABC subunit B [Propionibacterium acnes HL086PA1]
 gi|314915181|gb|EFS79012.1| excinuclease ABC subunit B [Propionibacterium acnes HL005PA4]
 gi|314918365|gb|EFS82196.1| excinuclease ABC subunit B [Propionibacterium acnes HL050PA1]
 gi|314919854|gb|EFS83685.1| excinuclease ABC subunit B [Propionibacterium acnes HL050PA3]
 gi|314925326|gb|EFS89157.1| excinuclease ABC subunit B [Propionibacterium acnes HL036PA3]
 gi|314931869|gb|EFS95700.1| excinuclease ABC subunit B [Propionibacterium acnes HL067PA1]
 gi|314956027|gb|EFT00425.1| excinuclease ABC subunit B [Propionibacterium acnes HL027PA1]
 gi|314958421|gb|EFT02524.1| excinuclease ABC subunit B [Propionibacterium acnes HL002PA1]
 gi|314960228|gb|EFT04330.1| excinuclease ABC subunit B [Propionibacterium acnes HL002PA2]
 gi|314963035|gb|EFT07135.1| excinuclease ABC subunit B [Propionibacterium acnes HL082PA1]
 gi|314968134|gb|EFT12233.1| excinuclease ABC subunit B [Propionibacterium acnes HL037PA1]
 gi|314973136|gb|EFT17232.1| excinuclease ABC subunit B [Propionibacterium acnes HL053PA1]
 gi|314976305|gb|EFT20400.1| excinuclease ABC subunit B [Propionibacterium acnes HL045PA1]
 gi|314978214|gb|EFT22308.1| excinuclease ABC subunit B [Propionibacterium acnes HL072PA2]
 gi|314983486|gb|EFT27578.1| excinuclease ABC subunit B [Propionibacterium acnes HL005PA1]
 gi|314987678|gb|EFT31769.1| excinuclease ABC subunit B [Propionibacterium acnes HL005PA2]
 gi|314990158|gb|EFT34249.1| excinuclease ABC subunit B [Propionibacterium acnes HL005PA3]
 gi|315077497|gb|EFT49555.1| excinuclease ABC subunit B [Propionibacterium acnes HL053PA2]
 gi|315080283|gb|EFT52259.1| excinuclease ABC subunit B [Propionibacterium acnes HL078PA1]
 gi|315084545|gb|EFT56521.1| excinuclease ABC subunit B [Propionibacterium acnes HL027PA2]
 gi|315085882|gb|EFT57858.1| excinuclease ABC subunit B [Propionibacterium acnes HL002PA3]
 gi|315088701|gb|EFT60677.1| excinuclease ABC subunit B [Propionibacterium acnes HL072PA1]
 gi|315096331|gb|EFT68307.1| excinuclease ABC subunit B [Propionibacterium acnes HL038PA1]
 gi|315098310|gb|EFT70286.1| excinuclease ABC subunit B [Propionibacterium acnes HL059PA2]
 gi|315100995|gb|EFT72971.1| excinuclease ABC subunit B [Propionibacterium acnes HL046PA1]
 gi|327325964|gb|EGE67754.1| excinuclease ABC subunit B [Propionibacterium acnes HL096PA2]
 gi|327332165|gb|EGE73902.1| excinuclease ABC subunit B [Propionibacterium acnes HL096PA3]
 gi|327442786|gb|EGE89440.1| excinuclease ABC subunit B [Propionibacterium acnes HL013PA2]
 gi|327446156|gb|EGE92810.1| excinuclease ABC subunit B [Propionibacterium acnes HL043PA2]
 gi|327447865|gb|EGE94519.1| excinuclease ABC subunit B [Propionibacterium acnes HL043PA1]
 gi|327451008|gb|EGE97662.1| excinuclease ABC subunit B [Propionibacterium acnes HL087PA3]
 gi|327452913|gb|EGE99567.1| excinuclease ABC subunit B [Propionibacterium acnes HL092PA1]
 gi|327453643|gb|EGF00298.1| excinuclease ABC subunit B [Propionibacterium acnes HL083PA2]
 gi|328753039|gb|EGF66655.1| excinuclease ABC subunit B [Propionibacterium acnes HL087PA1]
 gi|328753696|gb|EGF67312.1| excinuclease ABC subunit B [Propionibacterium acnes HL020PA1]
 gi|328759215|gb|EGF72831.1| excinuclease ABC subunit B [Propionibacterium acnes HL025PA2]
 gi|328760537|gb|EGF74105.1| excinuclease ABC subunit B [Propionibacterium acnes HL099PA1]
 gi|332675214|gb|AEE72030.1| UvrABC system protein B [Propionibacterium acnes 266]
          Length = 701

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/690 (52%), Positives = 488/690 (70%), Gaps = 29/690 (4%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + + ++ +  F + +++ PSGDQP AIA+L K ++S E+  +LLG TG+GKT T+A + E
Sbjct: 4   VTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWLAE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VM PNK LAAQ   E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS
Sbjct: 64  RLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +N++++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y   ++ L++G   ++ ELL 
Sbjct: 124 LNKEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDELLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV  QY R DI   RGTFRV GD++EIFP + E+ A RV  FG++IE ++  +PLTG+ 
Sbjct: 184 DLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTGEI 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I   E + ++  +HYV     +  A+  I++EL+ RL  LE++G+LLEAQRL  R TYD+
Sbjct: 243 ISEDEQVYVFPATHYVAGPERMERAIASIQQELEERLAVLERDGKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM++  G+C  IENYSR++ GR PG  P  L +Y PED +L +DESHVT+PQI GMY GD
Sbjct: 303 EMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL E+GFRLPS MDNRPL+F+E+      T+ +SATPGS+E E+  G+ VEQIIR
Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERAHGV-VEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++  R Q++D+  EI     +G R+L+T LTK+MAEDLT+YL E  IR R
Sbjct: 422 PTGLVDPEIIVKPTRGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIRTR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ S
Sbjct: 482 YLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++KI 
Sbjct: 542 LIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKKIG 601

Query: 731 EVIDPILLEDAATTNI----------------------SIDAQQLSLSKKK----GKAHL 764
           ++ + +  E A T  +                      +   ++L +SK      GK  +
Sbjct: 602 DITEMLAREGADTDELVEKFNYGKGHRGYNSMITDEQRAAQGRRLDVSKMAEEDLGKL-I 660

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L  +M  AA  L FE AAR+RDEI  LK
Sbjct: 661 VDLTTEMRSAAGELKFEVAARLRDEIADLK 690


>gi|307708786|ref|ZP_07645248.1| excinuclease ABC, B subunit [Streptococcus mitis NCTC 12261]
 gi|307615152|gb|EFN94363.1| excinuclease ABC, B subunit [Streptococcus mitis NCTC 12261]
          Length = 662

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 476/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I  +    
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-AVTKAV 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A   +  +D    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 608 AKEEDKEVDIN--SLNKQERKDLVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|313890967|ref|ZP_07824589.1| excinuclease ABC, B subunit [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313120691|gb|EFR43808.1| excinuclease ABC, B subunit [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 663

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/654 (54%), Positives = 473/654 (72%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP AIA+L+  I   EK Q+LLG TG+GKTFTM++VI  + +P +V+A
Sbjct: 10  FHLVSKYQPSGDQPQAIAELVDNIEGGEKAQILLGATGTGKTFTMSQVINQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ +   E + ++
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKVLGEAEHLILF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  ++  I+ EL+ +L   E EG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDEHMEASITKIQAELEQQLKLFESEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 310 GVENYSRHMDGRSAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+ Q   +I EQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMAQTDTVI-EQIIRPTGLLDPVIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  Q++D+  EIN  + +G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPSMGQMDDLLGEINSRSAKGERCFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S+Q AIDET RRR  Q+++N+KH I PQ++K+ I ++I       
Sbjct: 549 NSEGRVIMYADKMTDSMQKAIDETARRRHIQMDYNEKHGIVPQTIKKDIRDLIAITKEVG 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +     S+D    S+++ + K  +K L+KQM  AA+ L+FE AA IRD I  LK
Sbjct: 609 SEIAEESVDYT--SMNRTERKEAIKKLQKQMQEAAEMLDFELAAEIRDLILELK 660


>gi|293365540|ref|ZP_06612249.1| excision endonuclease subunit UvrB [Streptococcus oralis ATCC
           35037]
 gi|307703497|ref|ZP_07640439.1| excinuclease ABC, B subunit [Streptococcus oralis ATCC 35037]
 gi|291315908|gb|EFE56352.1| excision endonuclease subunit UvrB [Streptococcus oralis ATCC
           35037]
 gi|307622904|gb|EFO01899.1| excinuclease ABC, B subunit [Streptococcus oralis ATCC 35037]
          Length = 662

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 476/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I  +    
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-AVTKAV 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A   +  +D    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 608 AKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|325662412|ref|ZP_08151021.1| UvrABC system protein B [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471414|gb|EGC74637.1| UvrABC system protein B [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 663

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/654 (53%), Positives = 477/654 (72%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL+KG     + Q LLGVTGSGKTFTMA VI+ + +P +++A
Sbjct: 4   FELVSEYAPTGDQPQAIDQLVKGFQEGNQCQTLLGVTGSGKTFTMANVIQQLNKPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYI K+S+IN++ID++RH
Sbjct: 64  HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSAINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E+++ L++ QY R 
Sbjct: 124 SATAALSERRDVIIVASVSCIYGLGSPIDYQEMVISLRPGMIKDRDEVIAKLIEIQYDRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EIFP+  ED A R   FG++IE I+E   LTG+    +  + I+
Sbjct: 184 DMDFKRGTFRVRGDVLEIFPAISEDYAIRAEFFGDEIERITEIDLLTGEIKSELSHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  + +++ A K I+EEL+ ++   + E +LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 244 PASHYVVSKESIDRATKAIEEELEEQVRYFKSEDKLLEAQRIAERTNFDIEMMRETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PGE P TL +Y P+D ++ +DESH TIPQI GMY GD  RK TL +Y
Sbjct: 304 GIENYSRHLTGLKPGEAPHTLIDYFPDDFIIMIDESHKTIPQIGGMYAGDRSRKKTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATPG +E E+ + +  EQ+IRPTGL+DP VE
Sbjct: 364 GFRLPSALDNRPLNFEEFESKVNQMLFVSATPGEYE-ERNELLRAEQVIRPTGLLDPEVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N    +  ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ TLE
Sbjct: 423 VRPVEGQIDDLVGEVNKEIAKKNKVLITTLTKRMAEDLTDYMRELGIRVKYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+R+  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RTEIIRDMRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T S+Q AI+ET RRR+ Q+E+N+KH I P+++ + + ++I   + + 
Sbjct: 543 NAEGHVIMYADTMTDSMQAAIEETKRRRQVQMEYNEKHGITPKTIHKSVRDLIS--ISKK 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            ++  + ++    S+S+K+ +A +K + K+M  AA  LNFE AA +RD++   K
Sbjct: 601 VSSEEMKLEKDPESMSEKELQAAIKDINKKMKKAAAELNFEVAAELRDQLIEFK 654


>gi|294793535|ref|ZP_06758672.1| excinuclease ABC subunit B [Veillonella sp. 3_1_44]
 gi|294455105|gb|EFG23477.1| excinuclease ABC subunit B [Veillonella sp. 3_1_44]
          Length = 725

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/687 (53%), Positives = 482/687 (70%), Gaps = 40/687 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P+GDQP AI  L +GI   E  Q+LLG TG+GKTFTMAKVIEA+Q+P +++A
Sbjct: 14  FKVEAPFTPTGDQPTAIQSLTEGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKPTLIIA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++ID++RH
Sbjct: 74  HNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEIDKLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G  E YS +++ L++G +  + E+LS LV  QY R 
Sbjct: 134 SATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQTKSRDEILSKLVDIQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  IRGTFRV GD+I+IFP+   + A RV +FG++I+ + E   LTG+ I   + + +Y
Sbjct: 194 DMNFIRGTFRVQGDTIDIFPAAYSERAIRVELFGDEIDRLVEVDSLTGEVIAERKHVAVY 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +  +N A++ I+ EL  +L +L+   RLLEAQRLEQR  YD+EM++  G C 
Sbjct: 254 PASHYVTTKEKMNIAVERIEAELDEQLAKLKAADRLLEAQRLEQRTRYDIEMMQEMGYCS 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++ R  GE P TL +Y P+D L+ VDESHVT+PQI  MY GD  RK +L EY
Sbjct: 314 GIENYSRHMSERKAGEAPFTLIDYFPDDFLIMVDESHVTMPQIRAMYNGDRARKESLIEY 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       + VSATPG +E+E  +  I EQIIRPTGL+DP +E
Sbjct: 374 GFRLPSALDNRPLQFDEFVERINQIVYVSATPGPYEME-VETNIAEQIIRPTGLLDPSIE 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EI+  A +  R+L+T LTK+MAEDLTE+L E  +RVRY+HS++ T+E
Sbjct: 433 IRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSDIVTIE 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T++IQTIGRAAR
Sbjct: 493 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN  VI+YAD +T S+Q AIDET RRR  Q  +N +HNI P+SV + + E+I+   +E+
Sbjct: 553 NVNGHVIMYADRVTGSMQRAIDETDRRRAVQEAYNIEHNITPKSVSKDVKELIELTKIEE 612

Query: 741 AATTNISIDAQQLSLSKKKGK----------AH-----------------------LKSL 767
              T      +   LS KKGK           H                       ++ L
Sbjct: 613 DMVT------EGKGLSPKKGKQKKSSEGMDHGHESYVQDTSAPKVADITPEELYNKIEEL 666

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLK 794
            +QM  AA  L FE AA++RD++  L+
Sbjct: 667 DRQMKAAAKQLEFESAAKLRDQLGVLR 693


>gi|332362131|gb|EGJ39933.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK49]
          Length = 662

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEKEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADTIT+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTITQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|302341828|ref|YP_003806357.1| excinuclease ABC, B subunit [Desulfarculus baarsii DSM 2075]
 gi|301638441|gb|ADK83763.1| excinuclease ABC, B subunit [Desulfarculus baarsii DSM 2075]
          Length = 679

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/658 (54%), Positives = 467/658 (70%), Gaps = 11/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++DY P GDQP AIAQL  G+    K Q+LLGVTGSGKTFTMA VI A     +V+A
Sbjct: 21  FKLESDYQPQGDQPQAIAQLTAGLAQGCKRQVLLGVTGSGKTFTMANVIAASGLTTLVLA 80

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK  FPHNAVEYFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID+MRH
Sbjct: 81  PNKTLAAQLYGEFKALFPHNAVEYFVSYYDYYQPEAYIPASDTYIEKDSSINERIDKMRH 140

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R D I+V+SVSCIYG+GS E+Y+ M++ L+ GD V ++ +L  LV+  Y+R 
Sbjct: 141 AATFALLTRQDVIIVASVSCIYGLGSPEAYAGMLLYLQRGDQVGREAVLRKLVEMLYERN 200

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RG FR  GD +EIFP++ E+ A R+  FG+++E IS   PL G  +   + + I+
Sbjct: 201 EFSFHRGVFRARGDVVEIFPAYEEERAVRIEFFGDEVERISFIDPLRGVALEQTDKVVIF 260

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT       A+  I+ EL  R+   +   R +E+QR+ +R  +D+EM++  G C 
Sbjct: 261 PASHYVTTEGVREAAIAAIRAELAERIKYYDDNARFIESQRIRERTLFDIEMMKELGWCH 320

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PG+PPPTL +Y P+  LL +DESH+T PQ+ GMY GD  RKATL ++
Sbjct: 321 GIENYSRHLTGRQPGQPPPTLLDYFPKKWLLIIDESHITAPQVRGMYNGDRSRKATLVDF 380

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+N L    I VSATP  +ELEQ QG++VEQ+IRPTGL+DP VE
Sbjct: 381 GFRLPSALDNRPLNFDEFNALLDNVIYVSATPADYELEQAQGVVVEQLIRPTGLIDPIVE 440

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DV  E+ L A +G R L+T LTKRMAE+LTEYL E  + V+Y+HS++ T+ 
Sbjct: 441 VRPASGQVDDVMAELRLVAGRGERALVTTLTKRMAEELTEYLTEVGLSVKYLHSDIDTIA 500

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E+++ LR G FD+LVGINLLREGLD+PE  LVAILDAD+EGFLRS  SLIQT GRAAR
Sbjct: 501 RVELLQGLRRGDFDILVGINLLREGLDLPEVSLVAILDADREGFLRSTRSLIQTAGRAAR 560

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  KVI YAD IT SI  A++ET+RRR  Q ++N++H I P+S+K+ I  ++ P +  D
Sbjct: 561 NVGGKVIFYADQITDSIARAMEETSRRRVAQEQYNQEHGITPESIKKAIGAMLPPEIAAD 620

Query: 741 AAT----TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  T    D  +L        A +  LR++M  AA  L FEEAA +RD+IK L+
Sbjct: 621 YPAPPPLTAAVADPGELP-------AIIADLRRRMKEAAKGLRFEEAAELRDQIKALE 671


>gi|298674374|ref|YP_003726124.1| excinuclease ABC subunit B [Methanohalobium evestigatum Z-7303]
 gi|298287362|gb|ADI73328.1| excinuclease ABC, B subunit [Methanohalobium evestigatum Z-7303]
          Length = 664

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/662 (55%), Positives = 478/662 (72%), Gaps = 14/662 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ T Y P GDQP+AI+ L  G++   K Q LLGVTGSGKTFTMA VIE +Q+P +V+A
Sbjct: 4   FKVVTSYEPRGDQPSAISNLTNGLNKGFKHQTLLGVTGSGKTFTMANVIENVQKPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAY+P TDTYIEKESSINE+I+R+R 
Sbjct: 64  HNKTLAAQLYSEFREFFPDNAVEYFVSYYDYYQPEAYIPTTDTYIEKESSINEEINRLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SL+ER D IVVSSVSCIY IGS + + +M + L  G+ V++  L +SLV  QY+R 
Sbjct: 124 SATKSLMERRDVIVVSSVSCIYNIGSPDEWKEMSLFLSPGEEVDKSSLSASLVNMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV----ET 376
           DI   +GTFR  GD+IEI+P+  E+   R+ +FG++IE+IS F PLTG K++N     E 
Sbjct: 184 DIEFTQGTFRSRGDTIEIYPAQ-EEHGIRIELFGDEIEKISYFDPLTG-KVQNTLNEDEY 241

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           I IY   H+V P+  ++ AM  I++EL+  +   E   + LEAQRL QR  +D+EML   
Sbjct: 242 IAIYPAKHFVMPQEQIDRAMDSIEKELEEHVSRFEANNQQLEAQRLLQRTNFDMEMLREI 301

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSR+  GR PG+PP +L ++ P+D L+F+DESHVTIPQI GMY GD  RK +
Sbjct: 302 GYCSGIENYSRHFDGRRPGDPPYSLLDFFPDDYLIFIDESHVTIPQIGGMYNGDKSRKDS 361

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS  DNRPL+F+E+       I VSATP ++E  + +  +VEQIIRPTGLVD
Sbjct: 362 LVEYGFRLPSAYDNRPLKFDEFENRVNQIIYVSATPANYEFNKSEQ-VVEQIIRPTGLVD 420

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P + +R    Q++D+  E+   A++G R L+T LTKRMAEDLT+YL E  IRV+YMHS++
Sbjct: 421 PEIIVRPIENQIDDLIGEVREVAEEGYRTLVTTLTKRMAEDLTDYLLEVGIRVKYMHSDI 480

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER EI+R LR G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 481 DTLERAEIVRSLRKGDFDVLVGINLLREGLDIPEVELVAILDADKEGFLRSERSLIQTIG 540

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RA+RN N +VILYAD  T S++ AIDET RRRE Q++ N+++ I PQ++ + I + +  +
Sbjct: 541 RASRNANGRVILYADKTTGSMKRAIDETNRRRELQIDFNQRNGIVPQTITKAIQKELVEV 600

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKS----LRKQMHLAADNLNFEEAARIRDEIKR 792
              +  T+  S   + ++L++ K    +++    L + MHLAA NL FE+AA +RD+I  
Sbjct: 601 EYPEPQTSEYS---ETVALAENKSTKDIENLIIDLEEDMHLAAKNLEFEKAAELRDKIND 657

Query: 793 LK 794
           L+
Sbjct: 658 LR 659


>gi|319650564|ref|ZP_08004704.1| UvrABC system protein B [Bacillus sp. 2_A_57_CT2]
 gi|317397745|gb|EFV78443.1| UvrABC system protein B [Bacillus sp. 2_A_57_CT2]
          Length = 659

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/657 (55%), Positives = 475/657 (72%), Gaps = 6/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI ++++GI+S +K Q LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 5   FELVSKYSPQGDQPGAIKKIVEGINSGKKHQTLLGATGTGKTFTVSNVIQEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKDFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E YS+M++ L+ G  +E+ +LL  LV  QY+R 
Sbjct: 125 SATSSLFERKDVIIIASVSCIYGLGSPEEYSEMVLSLRTGMEIERNQLLHRLVDIQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ +   E + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEIMGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL +  +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRIAVQNIEKELEERLAELRENDKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PG  P TL +Y PED L+ +DESHVT+PQI GM+ GD  RK+ L ++
Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPEDFLIVIDESHVTLPQIRGMFNGDQARKSVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL F E+       + VSATPG +ELE    +I EQIIRPTGL+DP ++
Sbjct: 365 GFRLPSAMDNRPLTFTEFEKHVKQAVFVSATPGPYELEHTPEMI-EQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    Q+  R+L+T LTK+M+EDLT+YL E  I+V+Y+HSEVKTLE
Sbjct: 424 VRPIEGQIDDLIGEIQDRIQKNERVLVTTLTKKMSEDLTDYLKEIGIKVQYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIR+LRLGK+DVLVGINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRELRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YAD IT S++ AI ET RRR  Q E+NKKH I P ++++ I    D I    
Sbjct: 544 NANGHVIMYADRITDSMEKAISETKRRRSIQEEYNKKHGITPMTIQKDIR---DSIRATH 600

Query: 741 AATTN--ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA         A+   L+KK+ +  +  + K+M  AA +LNFE AA +RD I  LK+
Sbjct: 601 AAEEQEEYQPSAKLGKLNKKEREKLIGDMEKEMKEAAKSLNFERAAELRDLILELKA 657


>gi|303254266|ref|ZP_07340375.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS455]
 gi|302598760|gb|EFL65797.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS455]
          Length = 662

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/663 (54%), Positives = 479/663 (72%), Gaps = 5/663 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           NH  D   F++ + Y PSGDQ  AI QL+  I   EK Q+L+G TG+GKT+TM++VI  +
Sbjct: 3   NHITD-NQFKLVSKYQPSGDQLQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKV 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            +P +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N
Sbjct: 62  NKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           ++ID++RHSAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ L
Sbjct: 122 DEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDL 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ + 
Sbjct: 182 VDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLG 241

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V+ + I+  +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EM
Sbjct: 242 EVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEM 301

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G    +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+TI QI GMY GD  
Sbjct: 302 LREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDRS 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  YGFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPT
Sbjct: 362 RKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP VE+R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E +I+V+YM
Sbjct: 421 GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMSIKVKYM 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LI
Sbjct: 481 HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++
Sbjct: 541 QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL 600

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           I  +    A   +  +D    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  
Sbjct: 601 I-AVTKAVAKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLE 657

Query: 793 LKS 795
           +K+
Sbjct: 658 VKA 660


>gi|300853513|ref|YP_003778497.1| excinuclease ABC subunit B [Clostridium ljungdahlii DSM 13528]
 gi|300433628|gb|ADK13395.1| excinuclease ABC, subunit B [Clostridium ljungdahlii DSM 13528]
          Length = 660

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 477/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI  +  G+    K Q LLGVTGSGKTFTMA +IE +Q+P +V+A
Sbjct: 4   FKIHSKFKPTGDQPKAIDSIADGVLKGNKFQTLLGVTGSGKTFTMANIIEKVQKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF++FFP N+VEYFVSYYDYYQPEAY+P+TDTYIEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFRDFFPDNSVEYFVSYYDYYQPEAYIPQTDTYIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D IVV+SVSCIYG+G+ E Y ++ + L+ G    + E+L  LV+ QY+R 
Sbjct: 124 SATSALLERKDVIVVASVSCIYGLGNPEEYKKLTLSLRPGMIKNRDEVLKKLVEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +RGTFRV GD ++IFP+   D A RV  FG++I++I EF  LTG  I   +   I+
Sbjct: 184 DINFVRGTFRVKGDIVDIFPAASTDHAIRVEFFGDEIDKIREFDVLTGDTIGFRKHANIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T R  +  A++ I+EEL+ RL EL  + +LLEAQRL+QR  +D+EM+   G C 
Sbjct: 244 PASHFATSREKMELAIEKIEEELEHRLKELTSQDKLLEAQRLKQRTNFDIEMMREVGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR + GR  G PP TL +Y P+D LLF+DESHVT+PQ+  MY GD  RK +L EY
Sbjct: 304 GIENYSRIMDGRAKGSPPQTLIDYFPDDFLLFIDESHVTLPQVKAMYAGDRSRKDSLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F+E+       + VSATP  +ELE  +  + EQI+RPTGL+DP + 
Sbjct: 364 GFRLPSAYDNRPLKFQEFEKKINQVVFVSATPADYELEHSEN-VAEQILRPTGLLDPEII 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+Y+ I     +G RIL+T LTK+MAEDLT+Y  + N++ RY+HS + T++
Sbjct: 423 VKPIKGQIDDLYNSIQKTISRGYRILVTTLTKKMAEDLTDYFKDMNVKARYLHSSIATID 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLR G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RMKIIRDLRKGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILLE 739
           N  SKVI+YAD ITKS+  AI ET RRR+ Q+E+NKK+ I P+++ + I EVI+  ++LE
Sbjct: 543 NSESKVIMYADVITKSMDKAISETKRRRKIQIEYNKKNGIVPKTINKAIREVIESTMVLE 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +    N S++ + +    +K    +++  +QM  AA  L FEEAA++RD I +LK
Sbjct: 603 EKEEYN-SLE-EAVKADNEKIDELIEAHERQMKTAAKELRFEEAAKLRDAILKLK 655


>gi|282854217|ref|ZP_06263554.1| excinuclease ABC, B subunit [Propionibacterium acnes J139]
 gi|282583670|gb|EFB89050.1| excinuclease ABC, B subunit [Propionibacterium acnes J139]
 gi|314923202|gb|EFS87033.1| excinuclease ABC subunit B [Propionibacterium acnes HL001PA1]
 gi|314966970|gb|EFT11069.1| excinuclease ABC subunit B [Propionibacterium acnes HL082PA2]
 gi|315103242|gb|EFT75218.1| excinuclease ABC subunit B [Propionibacterium acnes HL050PA2]
 gi|327327791|gb|EGE69567.1| excinuclease ABC subunit B [Propionibacterium acnes HL103PA1]
          Length = 701

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/690 (52%), Positives = 487/690 (70%), Gaps = 29/690 (4%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + + ++ +  F + +++ PSGDQP AIA+L K ++S E+  +LLG TG+GKT T+A + E
Sbjct: 4   VTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWLAE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VM PNK LAAQ   E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS
Sbjct: 64  KLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +NE+++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y   ++ L++G   ++ ELL 
Sbjct: 124 LNEEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDELLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV  QY R DI   RGTFRV GD++EIFP + E+ A RV  FG++IE ++  +PLTG+ 
Sbjct: 184 DLVTNQYIRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTGEV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I   E + ++  +HYV     +  A+  I++EL+ RL  LE++G+LLEAQRL  R TYD+
Sbjct: 243 ISEDEQVYVFPATHYVAGPERMERAVASIQQELEERLAVLERDGKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM++  G+C  IENYSR++ GR PG  P  L +Y PED +L +DESHVT+PQI GMY GD
Sbjct: 303 EMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL E+GFRLPS MDNRPL+F+E+      T+ +SATPGS+E E+  G+ VEQIIR
Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERAHGV-VEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++    Q++D+  EI     +G R+L+T LTK+MAEDLT+YL E  IR R
Sbjct: 422 PTGLVDPEIIVKPTHGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIRTR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ S
Sbjct: 482 YLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++KI 
Sbjct: 542 LIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKKIG 601

Query: 731 EVIDPILLEDAATTNI----------------------SIDAQQLSLSKKK----GKAHL 764
           ++ + +  E A T  +                      +   ++L +SK      GK  +
Sbjct: 602 DITEMLAREGADTDELFEKFNYGKGHRGYNSMITDEQRAAQGKRLDVSKMAEEDLGKL-I 660

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L  +M  AA  L FE AAR+RDEI  LK
Sbjct: 661 VDLTTEMRSAAGELKFEVAARLRDEIADLK 690


>gi|270292807|ref|ZP_06199018.1| excinuclease ABC, B subunit [Streptococcus sp. M143]
 gi|270278786|gb|EFA24632.1| excinuclease ABC, B subunit [Streptococcus sp. M143]
          Length = 662

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I  +    
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-AVTKAV 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A   +  +D    SL+K + K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 608 AKEEDKEVDIN--SLNKHERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|312875888|ref|ZP_07735878.1| excinuclease ABC, B subunit [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797369|gb|EFR13708.1| excinuclease ABC, B subunit [Caldicellulosiruptor lactoaceticus 6A]
          Length = 661

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/663 (56%), Positives = 490/663 (73%), Gaps = 17/663 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+GDQP AI  L +GI   EK Q LLGVTGSGKTFTMAKVIE +QRP +V+A
Sbjct: 4   FKLVSDFKPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSINE+ID++RH
Sbjct: 64  HNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +GS E Y  + + L+ G   ++ E++  L++ QY+R 
Sbjct: 124 SATSALFERRDVIIVASVSCIYSLGSPEDYLNLTISLRPGMIKDRDEVIRELIRMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+   D A R+  FG++IE+I+EF  +TG+ I     + I+
Sbjct: 184 DIDFRRGRFRVRGDVLEVFPASNTDRAIRIEFFGDEIEKITEFDVVTGEVIGRRNHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    L  A+K I+EEL+ RL EL   G+L+EAQRLEQR  YD+EML+  G C+
Sbjct: 244 PASHYVTTAEKLKRAIKSIEEELEQRLKELRSMGKLVEAQRLEQRTRYDIEMLQEMGFCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR+PG PP TL +Y P+D ++F+DESHVTIPQ+  MY GD  RK TL EY
Sbjct: 304 GIENYSRHLTGRSPGSPPYTLLDYFPKDFIMFIDESHVTIPQVRAMYNGDKARKDTLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I VSATPG +EL++    IVEQIIRPTGLVDP +E
Sbjct: 364 GFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYELKKSSR-IVEQIIRPTGLVDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +   + Q++ +  EI    ++  R+L+T LTK+MAE LTEYL +  IRVRYMHS++ T+E
Sbjct: 423 VHPVQGQIDHLIGEIRKRVEKNQRVLVTTLTKKMAESLTEYLKDVGIRVRYMHSDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ KVI+YAD IT ++Q AIDET RRR+ Q+E+N+KH I PQ+V++ I ++I+      
Sbjct: 543 NVDGKVIMYADRITNAMQRAIDETNRRRKIQIEYNQKHRIIPQTVRKGIRQIIE------ 596

Query: 741 AATTNISIDAQQL---------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            AT +++ + ++          +++K++ + ++K L ++M   A  L FE+AA++RD+I 
Sbjct: 597 -ATVSVAEEEEKYEVVEKEIVENMTKEEIEEYIKELEQEMKKFAIELEFEKAAKVRDKIF 655

Query: 792 RLK 794
            LK
Sbjct: 656 ELK 658


>gi|288919861|ref|ZP_06414185.1| excinuclease ABC, B subunit [Frankia sp. EUN1f]
 gi|288348776|gb|EFC83029.1| excinuclease ABC, B subunit [Frankia sp. EUN1f]
          Length = 716

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/689 (52%), Positives = 486/689 (70%), Gaps = 30/689 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +++ P+GDQPAAI +L + I + EK  +LLG TG+GK+ T A ++E +QRPA+VMA
Sbjct: 27  FQVVSEFAPAGDQPAAIDELARRIQAGEKDVVLLGATGTGKSATTAWLVERLQRPALVMA 86

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE+++R+RH
Sbjct: 87  PNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEEVERLRH 146

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D IVV+SVSCIYG+G+ + Y   +V+L++GD    + LL   V  QY R 
Sbjct: 147 SATMNLLTRRDVIVVASVSCIYGLGTPQEYIDRMVRLRVGDEFGHERLLRRFVDVQYARN 206

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++E+FP + E++A R+ MFG++IE +S  +PLTG+ +R  E I ++
Sbjct: 207 DVAFTRGTFRVRGDTVEVFPVY-EELAVRIEMFGDEIERLSYLHPLTGEIVREAEEIFVF 265

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+ EL  RL ELE++ +LLEAQRL  R +YD+EM+   G C 
Sbjct: 266 PATHYVAGPERMERAITGIEAELTGRLTELERQSKLLEAQRLRMRTSYDIEMMRQVGFCS 325

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L ++
Sbjct: 326 GIENYSRHIDGRAAGTPPHTLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVDH 385

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR+EE+      T+ +SATPG +EL +  G +VEQIIRPTGL+DP + 
Sbjct: 386 GFRLPSAVDNRPLRWEEFLERIGQTVYLSATPGPYELGRGDG-VVEQIIRPTGLLDPEII 444

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI L A++  RIL+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 445 LKPTKGQIDDLVHEIRLRAERDERILVTTLTKKMAEDLTDYLLELGIRVRYLHSEVDTLR 504

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++ DLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 505 RVELLTDLRRGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSDKSLIQTIGRAAR 564

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+  AI+ET RRREKQ+ +N +  ++PQ +++K+++++D ++ E 
Sbjct: 565 NVSGQVHMYADKITPSMSHAIEETNRRREKQIAYNTERGLDPQPLRKKVVDILDDMVRET 624

Query: 741 A-------------------------ATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLA 774
           A                         A   +   A +L+   ++  A L + L  QMH A
Sbjct: 625 AGGEMIGGGGRAQSRGKAPAPGMKSKAGDTVGRYAAELAGMPREELAQLIRQLDDQMHEA 684

Query: 775 ADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           A  L FE AAR+RDEI  LK     +G+D
Sbjct: 685 AKELQFELAARLRDEISELKKE--LRGMD 711


>gi|323489396|ref|ZP_08094625.1| excinuclease ABC subunit B [Planococcus donghaensis MPA1U2]
 gi|323396890|gb|EGA89707.1| excinuclease ABC subunit B [Planococcus donghaensis MPA1U2]
          Length = 660

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/655 (55%), Positives = 471/655 (71%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q  Y P+GDQP AIA+L +GI   ++ Q LLG TG+GKT+TM+ VI+ +++P +VMA
Sbjct: 5   FNLQAPYEPAGDQPQAIAELTQGIIDGKRCQTLLGATGTGKTYTMSNVIQQVKKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP++DT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVPQSDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER+D IV++SVSCIYG+GS + Y +++V L+ G  +E+ +LL  LV  QY+R 
Sbjct: 125 SATSSLFERDDVIVIASVSCIYGLGSPKEYRELVVSLRKGMEIERNQLLRKLVDVQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  IRGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ I   + + I+
Sbjct: 185 DINFIRGTFRVRGDVVEIFPASRDERCLRVEFFGDEIDRIREVDALTGEIIGERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I+ EL+ RL E+  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREDKMVKAIENIEVELEERLKEMRAEDKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED LL VDESHVT+PQ+ GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGAQPYTLIDYFPEDFLLVVDESHVTLPQVRGMFNGDQARKKVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL F E+       + VSATPG +ELE     +VEQIIRPTGL+DP +E
Sbjct: 365 GFRLPSAMDNRPLTFTEFEEHISQAVFVSATPGPYELEHTPE-MVEQIIRPTGLLDPTIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+ DEI   +++  R+L+T LTK+M+EDLT YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLMDEIRQRSEKNERVLVTTLTKKMSEDLTAYLKDAGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIR+LR+G +DVLVGINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RIEIIRELRMGVYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT S+Q A+DETTRRR  Q E+N+KH + P ++++KI +VI      +
Sbjct: 544 NANGRVIMYADRITDSMQKAMDETTRRRTIQAEYNEKHGVTPITIQKKIRDVIRATNAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +   IS       L K++    +  L  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ESEEYISKAVTGKKLKKEERVKLISLLETEMKEAAKALDFERAAELRDTVLELKA 658


>gi|195978380|ref|YP_002123624.1| excinuclease ABC subunit B [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|238689826|sp|B4U3P4|UVRB_STREM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|195975085|gb|ACG62611.1| UvrB [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 663

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/660 (53%), Positives = 477/660 (72%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +D   F++ + Y PSGDQP AI  L+  I S EK Q+LLG TG+GKT+TM++VI  + +P
Sbjct: 5   RDFKAFKLVSKYAPSGDQPQAIEALVDNIESGEKAQILLGATGTGKTYTMSQVISKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL++LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNALVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ + + +
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKVLGDAD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML  
Sbjct: 245 HLVLFPATHFVTNDEHMEQSISKIQAELADQLKLFEAEGKLLEAQRLRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRSAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDKARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ    IVEQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTD-TIVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R +  Q++D+  EINL  ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRVERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN +  VI+YAD +T S+Q AIDET RRR  Q+ +N++H I PQ++K+ I ++I  
Sbjct: 544 GRAARNADGHVIMYADRMTDSMQRAIDETARRRAIQMAYNEEHGIIPQTIKKDIRDLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               +A  T    + + ++ S++  +  +K L+K M  AA+ L+FE AA++RD I  LK+
Sbjct: 604 SRAVEAKATEAETNYESMTRSER--QEAIKQLQKNMQEAAELLDFELAAQLRDLILELKA 661


>gi|269926387|ref|YP_003323010.1| excinuclease ABC, B subunit [Thermobaculum terrenum ATCC BAA-798]
 gi|269790047|gb|ACZ42188.1| excinuclease ABC, B subunit [Thermobaculum terrenum ATCC BAA-798]
          Length = 658

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/654 (54%), Positives = 478/654 (73%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D  P GDQP AI  L++G+ +  + Q LLG TG+GKTFT+A VIE +QRP +V+A
Sbjct: 4   FKIISDLRPVGDQPKAIEALVEGVRAGMRHQTLLGATGTGKTFTVANVIERLQRPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK FFP+NAVEYFVSYYDYYQPEAY+P+TDTYIEK++ IN++ID++RH
Sbjct: 64  HNKTLAAQLYAEFKEFFPNNAVEYFVSYYDYYQPEAYIPQTDTYIEKDTEINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LLER D I+V+SVSCIYG+GS E YS+ ++ LK GD+V   +++  LV+ QY+R 
Sbjct: 124 AATMALLERRDVIIVASVSCIYGLGSPEEYSKFVISLKRGDTVRLSKVIRRLVEAQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGTFRV GD++EI P++ ++VA R+  FG++I+ I+E  PLTG+ +       IY
Sbjct: 184 DQSLSRGTFRVRGDTLEIQPAY-DEVALRIEFFGDEIDRITEIDPLTGEVLIERTKADIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT +  L  A+K I+EEL+ R     ++G+++EA+RL+QR  YDLEML   G C 
Sbjct: 243 PRKHFVTSQERLQEAIKAIREELEERYNWFIEQGKIVEAERLKQRTLYDLEMLSEAGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L+GR PGEPP TL +Y P+D LL VDESH+T+PQI GMY GD  RK  L +Y
Sbjct: 303 GVENYSRHLSGRKPGEPPITLLDYFPDDFLLIVDESHITLPQIRGMYAGDRSRKEVLVQY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG WE E  +  IV QIIRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLTFDEFQSHIVNAIYVSATPGPWEEEHSEQ-IVHQIIRPTGLLDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ +E++    +G R+++T L KRMAE+L++YL E  I+ RY+H E+ TLE
Sbjct: 422 VRPTEGQIDDLLEEVHERVSKGQRVIITTLNKRMAEELSDYLSEMGIKNRYIHHEIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQ IGRAAR
Sbjct: 482 RVEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQMIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V  KVI+YADTIT+S+Q AIDET RRR  Q+E+N KHNI P S+ +++ ++ + +    
Sbjct: 542 HVEGKVIMYADTITESMQKAIDETNRRRAIQMEYNLKHNIVPASIVKEVRDITERVKAIA 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +      D   ++LSK +    +K L  QM  AA  L FE+AA +RD+I  L+
Sbjct: 602 ESKEQYRADG-AVNLSKDEIFRMIKDLESQMKQAAKALEFEKAAILRDQIAELR 654


>gi|227495385|ref|ZP_03925701.1| excision endonuclease subunit B [Actinomyces coleocanis DSM 15436]
 gi|226830932|gb|EEH63315.1| excision endonuclease subunit B [Actinomyces coleocanis DSM 15436]
          Length = 700

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/676 (54%), Positives = 482/676 (71%), Gaps = 23/676 (3%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F++ ++Y PSGDQP AI +L + I++ E+   LLG TG+GK+ T A +IE +QRP ++
Sbjct: 19  TPFEVISEYTPSGDQPKAIRELTERINAGERDITLLGATGTGKSATAAWLIEQVQRPTLI 78

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQL SE +N  P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+
Sbjct: 79  MAPNKTLAAQLASELRNLLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERL 138

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSAT SLL R D +VVSSVSCIYG+G+ E Y   +V+L+ G  VE+ ELL  LV  QY 
Sbjct: 139 RHSATNSLLTRRDTVVVSSVSCIYGLGTPEEYVNRMVELENGMRVERDELLRQLVSMQYT 198

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RGTFRV GD+IEI P + E++A R+ MFG++I+ ++  +PLTG+ IR V+   
Sbjct: 199 RNDMDFRRGTFRVRGDTIEIIPVY-EELAIRIEMFGDEIDSLAVLHPLTGELIREVDHTF 257

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++  SHYV  +  +  A+  I+ EL  R     +  +LLEAQRL  R TYDLEML   GS
Sbjct: 258 LFPASHYVAGKERMQRAISSIQAELDERTEWFTQRNKLLEAQRLRMRTTYDLEMLREIGS 317

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR++ GR  G PP TL +Y P+D LL +DESHVT+PQI GM+ GD  RK TL 
Sbjct: 318 CAGIENYSRHIDGRAAGTPPHTLLDYFPDDFLLIIDESHVTVPQIRGMFEGDMARKRTLV 377

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS MDNRPLRF E+      T+ +SATPG++ELE   G +VEQIIRPTGLVDP 
Sbjct: 378 DHGFRLPSAMDNRPLRFAEFQERVGQTVYLSATPGAYELEHSHG-VVEQIIRPTGLVDPK 436

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + ++  + Q++D+  EI     +  R+L+T LTKRMAE+LT Y  ER +RV Y+HS+V T
Sbjct: 437 IVVKPTQQQIDDLLGEIQERVSRNERVLVTTLTKRMAEELTTYFSERGVRVEYLHSDVDT 496

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L R+E++R+LRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRA
Sbjct: 497 LRRVELLRELRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRA 556

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV+ +V +YAD IT S+++AI ET RRRE QL +N ++ I+P+ +++KI +V D +  
Sbjct: 557 ARNVSGEVHMYADKITDSMRVAIAETERRREIQLAYNHENGIDPRPLRKKIQDVTDMLAR 616

Query: 739 EDA------------------ATTNISIDAQQLSLSKKKGK--AHLKSLRKQMHLAADNL 778
           ED                   A+T  S   +++  SK +G+    ++ L  QMHLAA++L
Sbjct: 617 EDVDTQTLLQGGYRKPQNGKNASTTASSKPERVG-SKAEGELLELIEQLTAQMHLAAEDL 675

Query: 779 NFEEAARIRDEIKRLK 794
            FE AA  RDE+K LK
Sbjct: 676 QFELAAHYRDELKELK 691


>gi|306825137|ref|ZP_07458479.1| excision endonuclease subunit UvrB [Streptococcus sp. oral taxon
           071 str. 73H25AP]
 gi|304432573|gb|EFM35547.1| excision endonuclease subunit UvrB [Streptococcus sp. oral taxon
           071 str. 73H25AP]
          Length = 662

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI +L+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYEPSGDQPQAIERLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K+   E+ D I +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKK---EIRDLIAVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A T     +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVTKEEDKEIDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|322391788|ref|ZP_08065253.1| excision endonuclease subunit UvrB [Streptococcus peroris ATCC
           700780]
 gi|321145268|gb|EFX40664.1| excision endonuclease subunit UvrB [Streptococcus peroris ATCC
           700780]
          Length = 662

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND I+V+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIIVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YDLEML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIEAELEEQLALFEKEGKLLEAQRLKQRTEYDLEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEHEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I  +    
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-SVTKAL 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A   +  +D    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 608 AKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|322385680|ref|ZP_08059324.1| excision endonuclease subunit UvrB [Streptococcus cristatus ATCC
           51100]
 gi|321270418|gb|EFX53334.1| excision endonuclease subunit UvrB [Streptococcus cristatus ATCC
           51100]
          Length = 662

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEKEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|50842290|ref|YP_055517.1| excinuclease ABC subunit B [Propionibacterium acnes KPA171202]
 gi|289426306|ref|ZP_06428052.1| excinuclease ABC, B subunit [Propionibacterium acnes SK187]
 gi|81692477|sp|Q6A9K7|UVRB_PROAC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|50839892|gb|AAT82559.1| excinuclease ABC subunit B [Propionibacterium acnes KPA171202]
 gi|289153471|gb|EFD02186.1| excinuclease ABC, B subunit [Propionibacterium acnes SK187]
 gi|313813162|gb|EFS50876.1| excinuclease ABC subunit B [Propionibacterium acnes HL025PA1]
 gi|315106997|gb|EFT78973.1| excinuclease ABC subunit B [Propionibacterium acnes HL030PA1]
          Length = 701

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/690 (52%), Positives = 487/690 (70%), Gaps = 29/690 (4%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + + ++ +  F + +++ PSGDQP AIA+L K ++S E+  +LLG TG+GKT T+A + E
Sbjct: 4   VTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWLAE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VM PNK LAAQ   E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS
Sbjct: 64  RLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +NE+++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y   ++ L++G   ++ ELL 
Sbjct: 124 LNEEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDELLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV  QY R DI   RGTFRV GD++EIFP + E+ A RV  FG++IE ++  +PLTG+ 
Sbjct: 184 DLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTGEI 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I   E + ++  +HYV     +  A+  I++EL+ RL  LE++G+LLEAQRL  R TYD+
Sbjct: 243 ISEDEQVYVFPATHYVAGPERMERAIASIQQELEERLAVLERDGKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM++  G+C  IENYSR++ GR PG  P  L +Y PED +L +DESHVT+PQI GMY GD
Sbjct: 303 EMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL E+GFRLPS MDNRPL+F+E+      T+ +SATPGS+E E+  G+ VEQIIR
Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERAHGV-VEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++  R Q++D+  EI     +G  +L+T LTK+MAEDLT+YL E  IR R
Sbjct: 422 PTGLVDPEIIVKPTRGQIDDLMGEIRTRVDRGDGVLVTTLTKKMAEDLTDYLMEHGIRTR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ S
Sbjct: 482 YLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++KI 
Sbjct: 542 LIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKKIG 601

Query: 731 EVIDPILLEDAATTNI----------------------SIDAQQLSLSKKK----GKAHL 764
           ++ + +  E A T  +                      +   ++L +SK      GK  +
Sbjct: 602 DITEMLAREGADTDELVEKFNYGKGQRGYNSMITDEQRAAQGRRLDVSKMAEEDLGKL-I 660

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L  +M  AA  L FE AAR+RDEI  LK
Sbjct: 661 VDLTTEMRSAAGELKFEVAARLRDEIADLK 690


>gi|315093111|gb|EFT65087.1| excinuclease ABC subunit B [Propionibacterium acnes HL060PA1]
          Length = 701

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/690 (52%), Positives = 487/690 (70%), Gaps = 29/690 (4%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + + ++ +  F + +++ PSGDQP AIA+L K ++S E+  +LLG TG+GKT T+A + E
Sbjct: 4   VTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWLAE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VM PNK LAAQ   E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS
Sbjct: 64  KLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +NE+++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y   ++ L++G   ++ ELL 
Sbjct: 124 LNEEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDELLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV  QY R DI   RGTFRV GD++EIFP + E+ A RV  FG++IE ++  +PLTG+ 
Sbjct: 184 DLVTNQYIRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTGEV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I   E + ++  +HYV     +  A+  I++EL+ RL  LE++G+LLEAQRL  R TYD+
Sbjct: 243 ISEDEQVYVFPATHYVAGPERMERAVASIQQELEERLAVLERDGKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM++  G+C  IENYSR++ GR PG  P  L +Y PED +L +DESHVT+PQI GMY GD
Sbjct: 303 EMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL E+GFRLPS MDNRPL+F+E+      T+ +SATPGS+E E+  G+ VEQIIR
Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERAHGV-VEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++    Q++D+  EI     +G R+L+T LTK+MAEDLT+YL E  IR R
Sbjct: 422 PTGLVDPEIIVKPTHGQIDDLMGEIRTRMDRGDRVLVTTLTKKMAEDLTDYLMEHGIRTR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ S
Sbjct: 482 YLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++KI 
Sbjct: 542 LIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKKIG 601

Query: 731 EVIDPILLEDAATTNI----------------------SIDAQQLSLSKKK----GKAHL 764
           ++ + +  E A T  +                      +   ++L +SK      GK  +
Sbjct: 602 DITEMLAREGADTDELFEKFNYGKGHRGYNSMITDEQRAAQGKRLDVSKMAEEDLGKL-I 660

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L  +M  AA  L FE AAR+RDEI  LK
Sbjct: 661 VDLTTEMRSAAGELKFEVAARLRDEIADLK 690


>gi|258653200|ref|YP_003202356.1| excinuclease ABC subunit B [Nakamurella multipartita DSM 44233]
 gi|258556425|gb|ACV79367.1| excinuclease ABC, B subunit [Nakamurella multipartita DSM 44233]
          Length = 739

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/687 (52%), Positives = 478/687 (69%), Gaps = 34/687 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY PSGDQP AIA+L K + + EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 28  FEVVSDYQPSGDQPQAIAELRKRLDAGEKDVVLLGATGTGKSATTAWLIEQVQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +  FP NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN  ++R+RH
Sbjct: 88  PNKTLAAQLANELRELFPENAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINNDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D IVV+SVSCIYG+G+ +SY    + + IG  +E+  LL +LV+ QY R 
Sbjct: 148 SATMSLLSRRDVIVVASVSCIYGLGTPQSYLDRSLPVAIGQQIERDALLRALVEIQYSRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI P++ E++A R+  FG+++E +   +PLTG  +R V++++I+
Sbjct: 208 DVSFTRGSFRVRGDTVEIIPAY-EELAVRIEFFGDEVERLYYLHPLTGDVVREVDSLRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+ EL  RL ELEK+G+LLEAQRL  R +YD+EM+   G C 
Sbjct: 267 PATHYVAGPERMAKAIAAIETELAQRLAELEKQGKLLEAQRLRMRTSYDVEMMRQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y P+D LL +DESHVT+PQI  MY GD  RK  L ++
Sbjct: 327 GIENYSRHIDGRPGGSAPATLIDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRVLVDH 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL +EE+      T+ +SATPG +EL Q QG  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSAMDNRPLTWEEFAGRIGQTVYLSATPGPYELGQAQGEFVEQVIRPTGLVDPEVV 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+  R Q++D+  EI     +  R+L+T LTK+M+EDLT+YL E  IRVRY+HSEV TL 
Sbjct: 447 IKPTRGQIDDLIGEIRARTIRDERVLVTTLTKKMSEDLTDYLLELGIRVRYLHSEVDTLR 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 507 RVELLRELRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +V +YAD IT S++ AIDET RRREKQ E+N+ H I+P  +++KI +++  +  E 
Sbjct: 567 NVNGEVHMYADKITPSMERAIDETNRRREKQQEYNRAHGIDPMPLRKKINDILALVYAEA 626

Query: 741 AATTN----ISIDAQQLSLSKKK-------GKAH----------------------LKSL 767
             T +    + +     + S+ +       GKA                       ++ L
Sbjct: 627 DNTVDGGSPVKVGGSGRNSSRGRKAQGEPGGKASKTSGVFAGHNTAGMARSELADLVQQL 686

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLK 794
             QM  AA +L FE A R+RDEI  LK
Sbjct: 687 TDQMMAAARDLKFELAGRLRDEISELK 713


>gi|213023392|ref|ZP_03337839.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 648

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/593 (60%), Positives = 446/593 (75%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           NVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597


>gi|296330276|ref|ZP_06872757.1| excinuclease ABC subunit B [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305676119|ref|YP_003867791.1| excinuclease ABC subunit B [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152544|gb|EFG93412.1| excinuclease ABC subunit B [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305414363|gb|ADM39482.1| excinuclease ABC subunit B [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 661

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/656 (54%), Positives = 476/656 (72%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L+KGI   +K Q LLG TG+GKTFT++ +I+ + +P +V+A
Sbjct: 5   FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y +M+V L+    +E+ ELL  LV  QY R 
Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYREMVVSLRPDMEIERNELLRKLVDIQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ + + E I I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGDREHIAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ +L  + + G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PG  P TL +Y P+D ++ VDESHVTIPQ+ GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       + VSATPG +E+E    +I EQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTDEMI-EQIIRPTGLLDPLID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIQARVERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILLE 739
           N   +VI+YAD +TKS+++AI+ET RRRE+Q   N++H I PQ++ ++I +VI   +  E
Sbjct: 544 NAEGRVIMYADKMTKSMEIAINETKRRREQQERFNEEHGITPQTINKEIRDVIRATVAAE 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           D A        +   ++KK+ +  ++ +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 DKAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKA 659


>gi|138896673|ref|YP_001127126.1| excinuclease ABC subunit B [Geobacillus thermodenitrificans NG80-2]
 gi|134268186|gb|ABO68381.1| Excinuclease ABC subunit B [Geobacillus thermodenitrificans NG80-2]
          Length = 659

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/657 (55%), Positives = 474/657 (72%), Gaps = 6/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P GDQP AI +L+ G+    K Q LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 5   FQLVSSYQPQGDQPQAIEKLVDGLKRGVKHQTLLGATGTGKTFTISNVIAKVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNTLLRRLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ +   E + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEVLGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I++EL+ RL EL ++G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKLAIANIEKELEERLAELREQGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIIDESHVTLPQLRGMYNGDRARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELE   G +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLTFDEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+   ++  R L+T LTK+MAEDLT+YL E   +V Y+HSE+KTLE
Sbjct: 424 VRPIAGQIDDLISEIHERVERNERTLVTTLTKKMAEDLTDYLKEAGFKVAYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTITKS+++AI ET RRR  Q E+NKKH I P+++++ I +VI       
Sbjct: 544 NANGHVIMYADTITKSMEIAIQETKRRRTIQEEYNKKHGIVPRTIQKDIRDVIRATY--- 600

Query: 741 AATTNISIDAQ--QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA    + +A+    +++K++ +  ++ L  +M  AA  L+FE AA++RD I  LK+
Sbjct: 601 AAEETETYEAKPTAANMTKQEREELIRQLEAEMKEAAKALDFERAAQLRDVIFELKA 657


>gi|331086213|ref|ZP_08335295.1| UvrABC system protein B [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406372|gb|EGG85886.1| UvrABC system protein B [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 663

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/654 (53%), Positives = 477/654 (72%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL+KG     + Q LLGVTGSGKTFTMA VI+ + +P +++A
Sbjct: 4   FELVSEYAPTGDQPQAIEQLVKGFQEGNQCQTLLGVTGSGKTFTMANVIQQLNKPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYI K+S+IN++ID++RH
Sbjct: 64  HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSAINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E+++ L++ QY R 
Sbjct: 124 SATAALSERRDVIIVASVSCIYGLGSPIDYQEMVISLRPGMIKDRDEVIAKLIEIQYDRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EIFP+  ED A R   FG++IE I+E   LTG+    +  I I+
Sbjct: 184 DMDFKRGTFRVRGDVLEIFPAISEDYAIRAEFFGDEIERITEIDLLTGEIKSELSHIAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  + +++ A K I+EEL+ ++   + E +LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 244 PASHYVVSKESIDRATKAIEEELEEQVRYFKSEDKLLEAQRIAERTNFDIEMMRETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PGE P TL +Y P+D ++ +DESH TIPQI GMY GD  RK TL +Y
Sbjct: 304 GIENYSRHLTGLKPGEAPHTLIDYFPDDFIIMIDESHKTIPQIGGMYAGDRSRKKTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATPG +E E+ + +  EQ+IRPTGL+DP VE
Sbjct: 364 GFRLPSALDNRPLNFEEFESKVNQMLFVSATPGEYE-ERNELLRAEQVIRPTGLLDPEVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N    +  ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ TLE
Sbjct: 423 VRPVEGQIDDLVGEVNKEIAKKNKVLITTLTKRMAEDLTDYMRELGIRVKYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+R+  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RTEIIRDMRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T S++ AI+ET RRR+ Q+E+N+KH I P+++ + + ++I   + + 
Sbjct: 543 NAEGHVIMYADTMTDSMKAAIEETKRRRQVQMEYNEKHGITPKTIHKSVRDLIS--ISKK 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            ++  + ++    S+S+K+ +A +K + K+M  AA  LNFE AA +RD++   K
Sbjct: 601 VSSEEMKLEKDPESMSEKELQAAIKDINKKMKKAAAELNFEVAAELRDQLIEFK 654


>gi|51595531|ref|YP_069722.1| excinuclease ABC subunit B [Yersinia pseudotuberculosis IP 32953]
 gi|153950655|ref|YP_001401802.1| excinuclease ABC subunit B [Yersinia pseudotuberculosis IP 31758]
 gi|170025148|ref|YP_001721653.1| excinuclease ABC subunit B [Yersinia pseudotuberculosis YPIII]
 gi|186894586|ref|YP_001871698.1| excinuclease ABC subunit B [Yersinia pseudotuberculosis PB1/+]
 gi|81825889|sp|Q66D62|UVRB_YERPS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189038011|sp|A7FKM4|UVRB_YERP3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238688574|sp|B1JSR9|UVRB_YERPY RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238691437|sp|B2K8T5|UVRB_YERPB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|51588813|emb|CAH20427.1| excinuclease ABC subunit B [Yersinia pseudotuberculosis IP 32953]
 gi|152962150|gb|ABS49611.1| UvrABC system, B protein [Yersinia pseudotuberculosis IP 31758]
 gi|169751682|gb|ACA69200.1| excinuclease ABC, B subunit [Yersinia pseudotuberculosis YPIII]
 gi|186697612|gb|ACC88241.1| excinuclease ABC, B subunit [Yersinia pseudotuberculosis PB1/+]
          Length = 671

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/660 (55%), Positives = 472/660 (71%), Gaps = 6/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +++A
Sbjct: 5   FKLHSVFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ    V    +Y
Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+  G I+EQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A    R+L+T LTKRMAEDLT+YL E   +VRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTDYLSEHGAKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +KI +++    P +
Sbjct: 545 NLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLGQPSM 604

Query: 738 LEDA---ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   +  ++   Q  SLS K     ++ L  +M+  A NL FE+AA +RD++ +L+
Sbjct: 605 RGKGKGRGSHKMADTTQYQSLSPKALDQKIRELEAKMYTYAQNLEFEQAAELRDQVHQLR 664


>gi|222529427|ref|YP_002573309.1| excinuclease ABC subunit B [Caldicellulosiruptor bescii DSM 6725]
 gi|312622339|ref|YP_004023952.1| excinuclease ABC subunit B [Caldicellulosiruptor kronotskyensis
           2002]
 gi|254764899|sp|B9MS82|UVRB_ANATD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|222456274|gb|ACM60536.1| excinuclease ABC, B subunit [Caldicellulosiruptor bescii DSM 6725]
 gi|312202806|gb|ADQ46133.1| excinuclease ABC, B subunit [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 661

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/663 (56%), Positives = 488/663 (73%), Gaps = 17/663 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+GDQP AI  L +GI   EK Q LLGVTGSGKTFTMAKVIE +QRP +V+A
Sbjct: 4   FKLVSDFKPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSINE+ID++RH
Sbjct: 64  HNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +GS E Y  + + L+ G + ++ E++  L++ QY+R 
Sbjct: 124 SATSALFERRDVIIVASVSCIYSLGSPEDYLNLTISLRPGMTKDRDEVIRDLIRMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+   D A R+  FG++IE I+EF  +TG+ I     + I+
Sbjct: 184 DIDFRRGRFRVRGDVLEVFPASNTDRAIRIEFFGDEIERITEFDVVTGEVIGRRNHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    L  A+K I+EEL+ RL EL   G+L+EAQRLEQR  YD+EML+  G C+
Sbjct: 244 PASHYVTTAEKLKRAIKSIEEELEQRLKELRSMGKLVEAQRLEQRTRYDIEMLQEMGFCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PG PP TL +Y P D ++F+DESHVTIPQ+  MY GD  RK TL EY
Sbjct: 304 GIENYSRHLTGRPPGSPPYTLLDYFPNDFIMFIDESHVTIPQVRAMYNGDKARKDTLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I VSATPG +EL++    IVEQIIRPTGLVDP +E
Sbjct: 364 GFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYELKKSSR-IVEQIIRPTGLVDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +   + Q++ +  EI    ++  R+L+T LTK+MAE LTEYL +  IRVRYMHS++ T+E
Sbjct: 423 VHPVQGQIDHLIGEIRKRVEKNQRVLVTTLTKKMAESLTEYLKDVGIRVRYMHSDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ KVI+YAD IT ++Q AIDET RRR+ Q+E+N+KH I PQ+V++ I ++I+      
Sbjct: 543 NVDGKVIMYADRITNAMQKAIDETNRRRKIQIEYNQKHGIVPQTVRKGIRQIIE------ 596

Query: 741 AATTNISIDAQQL---------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            AT +++ + ++          +++K++ + ++K L ++M   A  L FE+AA++RD+I 
Sbjct: 597 -ATVSVAEEEEKYEVVEKEIVENMTKEEIEEYIKELEQEMKKLAIELEFEKAAKVRDKIF 655

Query: 792 RLK 794
            LK
Sbjct: 656 ELK 658


>gi|238788761|ref|ZP_04632552.1| UvrABC system protein B [Yersinia frederiksenii ATCC 33641]
 gi|238723066|gb|EEQ14715.1| UvrABC system protein B [Yersinia frederiksenii ATCC 33641]
          Length = 706

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/659 (55%), Positives = 470/659 (71%), Gaps = 5/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 41  FKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 100

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SS+NE I++MR 
Sbjct: 101 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSVNEHIEQMRL 160

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 161 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSRN 220

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ    V    +Y
Sbjct: 221 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTVY 280

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 281 PKTHYVTPRERILQAMEEIKVELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCS 340

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 341 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 400

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 401 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGEVVDQVVRPTGLLDPLIE 460

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 461 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLEEHGARVRYLHSDIDTVE 520

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 521 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 580

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +KI +++    P +
Sbjct: 581 NLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLGQPSM 640

Query: 738 LEDAATTNISI-DAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                     + D     SL  K     ++ L  +M+  A NL FE+AA +RD++ +L+
Sbjct: 641 RGKGKGRGGKVADTNNYQSLPPKALDQKIRELEAKMYTHAQNLEFEQAAELRDQVHQLR 699


>gi|322387685|ref|ZP_08061294.1| excision endonuclease subunit UvrB [Streptococcus infantis ATCC
           700779]
 gi|321141552|gb|EFX37048.1| excision endonuclease subunit UvrB [Streptococcus infantis ATCC
           700779]
          Length = 662

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/658 (54%), Positives = 476/658 (72%), Gaps = 10/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND I+V+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIIVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIEAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEHEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I     + 
Sbjct: 549 NSEGHVIMYADTMTQSMQKAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLISVTKAVA 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            E+    +I+      SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 609 KEEDKEVDIN------SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|325687627|gb|EGD29648.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK72]
          Length = 662

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|167760010|ref|ZP_02432137.1| hypothetical protein CLOSCI_02382 [Clostridium scindens ATCC 35704]
 gi|167662303|gb|EDS06433.1| hypothetical protein CLOSCI_02382 [Clostridium scindens ATCC 35704]
          Length = 662

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/648 (53%), Positives = 472/648 (72%), Gaps = 3/648 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y P+GDQP AI QL+KG     + Q LLGVTGSGKTFTMA +I  + +P +++A
Sbjct: 7   FKLESPYKPTGDQPQAIEQLVKGFREGNQCQTLLGVTGSGKTFTMANIIAQLNKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP N+VEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID++RH
Sbjct: 67  HNKTLAAQLYGEFKEFFPSNSVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDKLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y  M++ L+ G   ++ E++  L++ QY+R 
Sbjct: 127 SATAALSERRDVIIVASVSCIYGLGSPIDYQNMVISLRPGMEKDRDEVIHKLIEIQYERN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGTFRV GD +EI P+  E +A+R+  FG++++ I+E   LTG+    +  + I+
Sbjct: 187 EMDFKRGTFRVRGDVLEIIPALTEGMAYRIEFFGDEVDRITEVDVLTGEIKNELNHVAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  + ++  A++ I+EEL+ ++   + EG+LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 247 PASHYVVSKESMERAIRGIEEELEDQIHYFKSEGKLLEAQRISERTNFDIEMMRETGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PG+PP TL +Y P+D ++ +DESH T+PQI GMY GD  RK+TL EY
Sbjct: 307 GIENYSRHLTGLEPGQPPHTLIDYFPDDFIMMIDESHKTVPQIGGMYHGDQSRKSTLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       + VSATPG +E EQ + +  EQ+IRPTGL+DP VE
Sbjct: 367 GFRLPSAKDNRPLSFEEFESKIDQVMFVSATPGPYE-EQHELLRAEQVIRPTGLLDPEVE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N    +  +IL+T LTKRMAEDLT+Y+ E  IRVRY+HS++ TLE
Sbjct: 426 VRPVEGQIDDLVGEVNKEIAKKNKILITTLTKRMAEDLTDYMRELGIRVRYLHSDIDTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 486 RTEIVRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADTIT S++LA+DET RRR+ Q+E+N+ H I PQ++++ + ++I   + + 
Sbjct: 546 NAEGHVIMYADTITDSMRLALDETERRRKVQMEYNEAHGITPQTIQKSVRDLI--AVSKK 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            A   + ++    S+S+K+ +   K L KQM  AA  LNFE AA +RD
Sbjct: 604 VAAEELRLEKDPESMSEKELEKLTKELTKQMKKAAAELNFEAAAELRD 651


>gi|123443116|ref|YP_001007090.1| excinuclease ABC subunit B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|189038010|sp|A1JSC3|UVRB_YERE8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|122090077|emb|CAL12940.1| excinuclease ABC subunit B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 670

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/659 (55%), Positives = 470/659 (71%), Gaps = 5/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ    V    +Y
Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +L+E QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEDIKVELAERRKVLLANNKLIEEQRITQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPSDGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDVIDQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLEEHGARVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-----DP 735
           N+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +KI +++       
Sbjct: 545 NLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLGQPST 604

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                     ++      SL+ K     ++ L  +M+  A NL FE+AA +RD++ +L+
Sbjct: 605 RGKGKGRGGKVADTNNYQSLAPKALDQKIRELEAKMYTHAQNLEFEQAAELRDQVHQLR 663


>gi|324990987|gb|EGC22921.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK353]
          Length = 662

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTDYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI   A++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEITARAEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSDGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKEMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|315444476|ref|YP_004077355.1| excinuclease ABC subunit B [Mycobacterium sp. Spyr1]
 gi|315262779|gb|ADT99520.1| Excinuclease ABC subunit B [Mycobacterium sp. Spyr1]
          Length = 719

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/690 (52%), Positives = 482/690 (69%), Gaps = 30/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQPAAI +L + I + EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 28  FEVVSEYEPAGDQPAAIKELERRIRAGEKDVVLLGATGTGKSATTAWLIERLQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 88  PNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+GD V +  LL  LV  QY R 
Sbjct: 148 SATSNLLSRRDVVVVASVSCIYGLGTPQSYMDRSVELKVGDEVPRDSLLRLLVDVQYTRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI PS+ E++A R+  FG++IEE+   +PLTG  IR V++++I+
Sbjct: 208 DMSFTRGTFRVRGDTVEIIPSY-EELAVRIEFFGDEIEELYYLHPLTGDIIRKVDSLRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+ EL+ RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 267 PATHYVAGTERMAAAISTIEAELEARLAELEGQGKLLEAQRLRMRTNYDIEMMRQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED LL +DESHVT+PQI GMY GD  RK  L ++
Sbjct: 327 GIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVDF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE+      T+ +SATPG++EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSAVDNRPLTWEEFADRIGQTVYLSATPGNFELAQTGGEFVEQVIRPTGLVDPQVI 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 447 VKPTKGQIDDLIGEIRKRTERDERVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVL+GINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSPRSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRR KQ+ +N +  I+PQ +++KI +++D +  E 
Sbjct: 567 NVSGEVHMYADKITDSMKQAIDETERRRAKQIAYNTERGIDPQPLRKKIADILDQVYREA 626

Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773
             T  + I     + S+ +      G+A                      +K L  QM  
Sbjct: 627 DDTEAVEIGGSGRNASRGRRAPGEPGRAVSAGVYEGRDTKNMPRAELADLIKDLTAQMMA 686

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE AARIRDEI+ LK     +G+D
Sbjct: 687 AARDLQFELAARIRDEIQDLKKE--LRGMD 714


>gi|325690568|gb|EGD32571.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK115]
          Length = 662

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLGIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADTIT+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTITQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMVKKLEGQMQEAAGLLDFELAAQIRDMILEIKT 660


>gi|157149718|ref|YP_001450327.1| excinuclease ABC subunit B [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189037999|sp|A8AX17|UVRB_STRGC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|157074512|gb|ABV09195.1| excinuclease ABC, B subunit [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 662

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/657 (54%), Positives = 476/657 (72%), Gaps = 8/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELISKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L + EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAKFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I      L
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLISVTKTAL 608

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            D   T + I+    SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 609 PDKEET-VEIE----SLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|313892790|ref|ZP_07826371.1| excinuclease ABC, B subunit [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313442721|gb|EFR61132.1| excinuclease ABC, B subunit [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 724

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/681 (53%), Positives = 487/681 (71%), Gaps = 28/681 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P+GDQP AI  L +GI   E  Q+LLG TG+GKTFTMAKVIEA+Q+P +++A
Sbjct: 14  FKVEAPFTPTGDQPTAIQSLTEGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKPTLIIA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++ID++RH
Sbjct: 74  HNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEIDKLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G  E YS++++ L++G +  + E+LS LV  QY R 
Sbjct: 134 SATMSLFERRDVIIVASVSCIYGLGDPEDYSELVLSLRLGQTKSRDEILSKLVDIQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  IRGTFRV GD+IEIFP+   + A RV +FG++I+ + E   LTG+ I   + + +Y
Sbjct: 194 DMNFIRGTFRVQGDTIEIFPAAYSERAIRVELFGDEIDRLVEVDALTGEVIAERKHVAVY 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +  +  A++ I+ EL+ +L +L+   RLLEAQRLEQR  YD+EM++  G C 
Sbjct: 254 PASHYVTTKDKMRIAVERIEAELEEQLAKLKAADRLLEAQRLEQRTRYDIEMMQEMGYCS 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++ R  GE P TL +Y P+D L+ VDESHVT+PQ+  MY GD  RK +L EY
Sbjct: 314 GIENYSRHMSERKAGEAPYTLIDYFPDDFLIMVDESHVTMPQVRAMYNGDRARKESLIEY 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       + VSATPG +E+E  Q  + EQIIRPTGL+DP +E
Sbjct: 374 GFRLPSALDNRPLQFDEFVERINQIVYVSATPGPYEME-VQTNVAEQIIRPTGLLDPSIE 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EI+  A +  R+L+T LTK+MAEDLTE+L E  +RVRY+HS++ T+E
Sbjct: 433 IRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSDIVTIE 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T++IQTIGRAAR
Sbjct: 493 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN  VI+YAD IT S+Q AIDET RRR  Q  +N +HNI P+SV + + E+I+   +E+
Sbjct: 553 NVNGHVIMYADRITGSMQRAIDETDRRRAVQEAYNIEHNITPKSVSKDVKELIELTKIEE 612

Query: 741 AATTN---------------ISID------AQQLS------LSKKKGKAHLKSLRKQMHL 773
              T+                 +D      AQ +S      ++ ++    ++ L +QM  
Sbjct: 613 DIVTDGKAFSPKKGKKKSSTTGMDHGHEPYAQDISSPKVADITPEELFNKIEELDRQMKA 672

Query: 774 AADNLNFEEAARIRDEIKRLK 794
           AA  L FE+AA++RD++  L+
Sbjct: 673 AAKQLEFEKAAKLRDQLGELR 693


>gi|307704944|ref|ZP_07641835.1| excinuclease ABC, B subunit [Streptococcus mitis SK597]
 gi|307621558|gb|EFO00604.1| excinuclease ABC, B subunit [Streptococcus mitis SK597]
          Length = 662

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D ++ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFMIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYETEQTETVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR LRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRGLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I  +    
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-AVTKAV 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A   +  +D    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 608 AKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|260597170|ref|YP_003209741.1| excinuclease ABC subunit B [Cronobacter turicensis z3032]
 gi|260216347|emb|CBA29364.1| UvrABC system protein B [Cronobacter turicensis z3032]
          Length = 673

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/664 (55%), Positives = 475/664 (71%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI ++ +G+      Q LLGVTGSGKTFTMA VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRIKEGLEDGLAHQTLLGVTGSGKTFTMANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLTELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTG     ++   +Y
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDELALRVELFDEEVERLSLFDPLTGTVDSIIQRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEDIKVELAERRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGE PPTLF+Y+P D LL +DESHVTIPQI GM+RGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMFRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P T+ VSATPG++ELE+    I++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTVYVSATPGNYELEKSGSEIIDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI        R+L+T LTKRMAEDLTEYL E   +VRY+HS++ T+E
Sbjct: 425 VRPVGTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D IT S+  AI+ET RRREKQ  +N++H I PQ + +K+++++   L E+
Sbjct: 545 NVNGKAILYGDKITPSMARAINETERRREKQQAYNEEHGIVPQGLNKKVVDIL--ALGEN 602

Query: 741 AATTNISIDAQQLSL----------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A T      +  ++          + K  +  +  L  QM   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKGRTVADAEAAELALTPKALQQKIHQLEAQMVQHAQNLEFEEAAQIRDKL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|125718171|ref|YP_001035304.1| excinuclease ABC subunit B [Streptococcus sanguinis SK36]
 gi|189038006|sp|A3CNJ9|UVRB_STRSV RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|125498088|gb|ABN44754.1| Helicase subunit of the DNA excision repair complex, subunit B,
           putative [Streptococcus sanguinis SK36]
          Length = 662

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYKPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|269795319|ref|YP_003314774.1| excinuclease ABC subunit B [Sanguibacter keddieii DSM 10542]
 gi|269097504|gb|ACZ21940.1| Excinuclease ABC subunit B [Sanguibacter keddieii DSM 10542]
          Length = 699

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/687 (51%), Positives = 481/687 (70%), Gaps = 25/687 (3%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + +  + +  F++ ++Y PSGDQP AIA+L + I   EK  +LLG TG+GK+ T A +IE
Sbjct: 4   VTDLQRTVAPFEVISEYTPSGDQPTAIAELSQRIQGGEKDVVLLGATGTGKSATTAWLIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAY+ +TDT+IEK+SS
Sbjct: 64  KLQRPTLVMAPNKTLAAQLATEFRELLPNNAVEYFVSYYDYYQPEAYIAQTDTFIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN++++R+RHSAT +LL R D IVV+SVSCIYG+G+ + Y   +V+L +GD V++  LL 
Sbjct: 124 INDEVERLRHSATSNLLTRRDVIVVASVSCIYGLGTPQEYVDRMVRLDVGDQVDRDTLLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD++EI P + E++A R+  FG++IE I   +PLTG  
Sbjct: 184 KFVTMQYTRNDMAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIEAIQTLHPLTGDV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +RN  +I ++  +HYV     +  A+  I+ EL+ RL  +E + +LLEAQRL  R TYD+
Sbjct: 243 VRNETSIHLFPATHYVAGPERMEKAIASIEAELEERLATMEAQNKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   GSC  IENYSR++ GR PG  P TL +Y PED LL +DESHVT+PQI  MY GD
Sbjct: 303 EMMREIGSCSGIENYSRHIDGRGPGTAPHTLLDYFPEDFLLVIDESHVTVPQIGAMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK  L ++GFRLPS MDNRPLR+EE+      T+ +SATPG +EL    G  VEQIIR
Sbjct: 363 MSRKRNLVDHGFRLPSAMDNRPLRWEEFVDRIGQTVYLSATPGKYELSMSDGF-VEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DP V ++  + Q++D+ +EI + A++  R+L+T LTK+MAEDLT+Y  ++ +RVR
Sbjct: 422 PTGLIDPEVVVKPTKGQIDDLLEEIRVRAEKDERVLVTTLTKKMAEDLTDYFLDKGVRVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSEV TL R+E++R+LR+G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS
Sbjct: 482 YLHSEVDTLRRVELLRELRMGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSATS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YADT+T S+ +A++ET RRREKQ+ +N +H I+P  +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADTVTPSMAMALEETDRRREKQVAYNLEHGIDPTPLRKKIS 601

Query: 731 EVIDPILLEDAATTNI--------SIDAQQLSLSKKKGKAH---------------LKSL 767
           +V D +  ED  T  +        +     L    K+G                  ++ L
Sbjct: 602 DVTDMLAREDIDTRELLEGGYRKPAKGGAPLPGGPKEGATSGNRLAVAAAGDLVGLIQEL 661

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLK 794
            +QMH AA  L FE AAR+RDE+  LK
Sbjct: 662 DEQMHAAAAELQFELAARLRDEVSGLK 688


>gi|28212086|ref|NP_783030.1| excinuclease ABC subunit B [Clostridium tetani E88]
 gi|81841130|sp|Q890X8|UVRB_CLOTE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|28204529|gb|AAO36967.1| excinuclease ABC subunit B [Clostridium tetani E88]
          Length = 661

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/660 (54%), Positives = 470/660 (71%), Gaps = 14/660 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ + + P GDQP AI  +  GI   +K Q LLGVTGSGKTFTMAK+IE +Q+P +V+A
Sbjct: 4   LKVHSKFEPKGDQPKAIRSISDGILKGDKYQTLLGVTGSGKTFTMAKIIEQVQKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP N+VEYFVSYYDYYQPEAYV +TDTYIEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFREFFPENSVEYFVSYYDYYQPEAYVAQTDTYIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D I+VSSVSCIYG+G+ E Y  + + L+ G   ++ E+L  LV+ QY+R 
Sbjct: 124 SATSALLERKDVIIVSSVSCIYGLGNPEEYKNLTISLREGMEKDRDEILKKLVEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I  +RGTFRV GD ++IFP+   ++A RV  FG++IE+I EF  LTG+ +     + I+
Sbjct: 184 EINFVRGTFRVRGDVLDIFPASSSNIAIRVEFFGDEIEKIREFDSLTGEIVGKRNHVSIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T +  L   +K I+EEL++R+ E  KE +LLEAQR++QR  +D+EM+   G C 
Sbjct: 244 PASHFATSKERLEVGIKKIEEELEIRVQEFIKEDKLLEAQRIKQRTNFDIEMMRELGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR  G PP TL +Y PED LLFVDESHVT+PQ+ GMY GD  RK  L  Y
Sbjct: 304 GIENYSRILDGRAAGTPPQTLLDYFPEDFLLFVDESHVTLPQVRGMYGGDRSRKDNLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+       + VSATPG  EL++    + EQIIRPTGL+DP + 
Sbjct: 364 GFRLPSAYDNRPLKFNEFQSKLNRVVFVSATPGDHELDKSSN-VAEQIIRPTGLLDPEII 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+Y  IN   + G R+L+T LTK+MAEDLTEY  E NI+ RY+HS++ T+E
Sbjct: 423 VKPIKGQIDDLYSNINETIKNGFRVLVTTLTKKMAEDLTEYFKEMNIKTRYLHSDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIR+LRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQ IGRAAR
Sbjct: 483 RMKIIRELRLGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSDRSLIQIIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+YAD ITKS+  AI ET RRR  Q+E+NK++NI PQ++ + I EVI+      
Sbjct: 543 NSESKVIMYADNITKSMDRAIKETNRRRVIQMEYNKENNIVPQTIIKDIREVIE------ 596

Query: 741 AATTNISIDAQQLSLSK--KKGKAHLKSL----RKQMHLAADNLNFEEAARIRDEIKRLK 794
            AT  +  +A+  SL +  +    +L+ L       M  AA  L FE+AA  RD I++LK
Sbjct: 597 -ATKVVEEEAEYDSLEEAIQANNENLEELISKYEADMRKAAKELEFEKAAHYRDIIQKLK 655


>gi|262282394|ref|ZP_06060162.1| excinuclease ABC subunit B [Streptococcus sp. 2_1_36FAA]
 gi|262261685|gb|EEY80383.1| excinuclease ABC subunit B [Streptococcus sp. 2_1_36FAA]
          Length = 662

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELISKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|153814663|ref|ZP_01967331.1| hypothetical protein RUMTOR_00878 [Ruminococcus torques ATCC 27756]
 gi|317501127|ref|ZP_07959333.1| UvrABC system protein B [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331090128|ref|ZP_08339017.1| UvrABC system protein B [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145848157|gb|EDK25075.1| hypothetical protein RUMTOR_00878 [Ruminococcus torques ATCC 27756]
 gi|316897514|gb|EFV19579.1| UvrABC system protein B [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330402590|gb|EGG82159.1| UvrABC system protein B [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 662

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/654 (54%), Positives = 474/654 (72%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL+KG     + Q LLGVTGSGKTFTMA VI+ + +P +++A
Sbjct: 4   FELVSEYAPTGDQPQAIDQLVKGFQEGNQCQTLLGVTGSGKTFTMANVIQQLNKPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID++R 
Sbjct: 64  HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDKLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y  M++ L+ G + ++ E+++ L++ QY R 
Sbjct: 124 SATMALTERRDVIIVASVSCIYGLGSPVDYQNMVISLRPGMTKDRDEVMAKLIEIQYDRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EI P++  DVA R+  FG+++E I+E   LTG+    +  + I+
Sbjct: 184 DMDFHRGTFRVRGDVVEIIPAYESDVAIRIEFFGDEVERITEIDILTGEVKDELSHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  +  +  A+  I++EL  R+ E +   +LLEAQR+ +R  +D+EML+ TG C 
Sbjct: 244 PASHYVVDKENIKRAVNDIEKELDERVKEFKHADKLLEAQRIAERTNFDIEMLKETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L G +PG+ P TL +Y P+D ++ +DESH TIPQI GMY GD  RK+TL +Y
Sbjct: 304 GIENYSRHLAGLSPGQAPYTLIDYFPDDFIIMIDESHKTIPQIGGMYHGDQSRKSTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       + VSATPG +E E+ + + VEQ+IRPTGL+DP V 
Sbjct: 364 GFRLPSAKDNRPLNFEEFESKINQALFVSATPGVYE-EEHELLRVEQVIRPTGLLDPEVV 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    Q  ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS+V TLE
Sbjct: 423 VRPVEGQIDDLIGEINKEISQKNKVLVTTLTKRMAEDLTDYMREVGIRVKYLHSDVDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT+S+QLAIDET RRRE Q+++N++H I P+++++ + ++I   + + 
Sbjct: 543 NAQGHVIMYADKITESMQLAIDETKRRREIQMKYNEEHGITPKTIQKSVRDLIS--ISKK 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A   + ++    S+S K+ K  +  L KQM  AA  LNFE AA +RD++  LK
Sbjct: 601 VAAEELKLEKDPESMSVKELKKLIADLTKQMKKAAAELNFESAAELRDKLTELK 654


>gi|332366708|gb|EGJ44449.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK1059]
          Length = 662

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ ELK +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELKEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI   A++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEITARAEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVCLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|332160999|ref|YP_004297576.1| excinuclease ABC subunit B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604871|emb|CBY26369.1| excinuclease ABC subunit B [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665229|gb|ADZ41873.1| excinuclease ABC subunit B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863978|emb|CBX74060.1| UvrABC system protein B [Yersinia enterocolitica W22703]
          Length = 670

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/659 (55%), Positives = 470/659 (71%), Gaps = 5/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ    V    +Y
Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +L+E QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEDIKIELAERRKVLLANNKLIEEQRITQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPSDGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDVIDQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLEEHGARVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-----DP 735
           N+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +KI +++       
Sbjct: 545 NLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLGQPST 604

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                     ++      SL+ K     ++ L  +M+  A NL FE+AA +RD++ +L+
Sbjct: 605 RGKGKGRGGKVADTNNYQSLAPKALDQKIRELEAKMYTHAQNLEFEQAAELRDQVHQLR 663


>gi|56964823|ref|YP_176554.1| excinuclease ABC subunit B [Bacillus clausii KSM-K16]
 gi|81822037|sp|Q5WDG7|UVRB_BACSK RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56911066|dbj|BAD65593.1| excinuclease ABC subunit B UvrB [Bacillus clausii KSM-K16]
          Length = 660

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 468/655 (71%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P GDQP AI Q++ GI + +K Q LLG TG+GKTFTM+ VI+A+ +P +VMA
Sbjct: 5   FQLVSDYSPQGDQPKAIEQIVTGIQNGKKHQTLLGATGTGKTFTMSNVIQAVNKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK  FP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKQLFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y  +++ ++ G  +++  LL  LV  QY R 
Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYRDLVLSIRTGMEMDRNSLLRKLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +RGTFRV GD +EIFP+  ++   RV  FG++IE I+E   LTG+       + I+
Sbjct: 185 DINFVRGTFRVRGDVVEIFPASRDEQCMRVEFFGDEIERITEVDALTGEIKGERHHVSIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I+ EL+ RL  L KE +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKKAIANIEVELEERLSVLRKEEKLLEAQRLEQRTRYDLEMMAEMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL ++ P+D LL VDESHVT+PQ+ GMY GD  RK  L  +
Sbjct: 305 GIENYSRHLTLREAGATPYTLLDFFPKDFLLIVDESHVTLPQVRGMYNGDRARKEILVNH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLKFEEFEEKVGQAVYVSATPGPYELEHTPE-MVEQIIRPTGLLDPVVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  +I+    +  R+L+T LTK+MAEDLT+YL E  I+VRY+HSEVKTLE
Sbjct: 424 VRPIEGQIDDLIGQIHDQIAKDERVLVTTLTKKMAEDLTDYLKEIGIKVRYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIR LRLG FDVL+GINLLREG+DIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 484 RLEIIRQLRLGTFDVLIGINLLREGIDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +T S+++AI+ET RRR+ Q  +N++H I PQ+++++I EV+      +
Sbjct: 544 NANGRVIMYADKMTHSMEVAINETKRRRQIQQAYNEQHGITPQTIQKRIPEVVQATYAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                 +       L KK+ +A ++ +  +M  AA  LNFE AA +RD +  LK+
Sbjct: 604 ETGDYKASSTSSKKLGKKERQATIERVEAEMKQAAKELNFERAAELRDVLLELKA 658


>gi|325694670|gb|EGD36577.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK150]
          Length = 662

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEVQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|238019503|ref|ZP_04599929.1| hypothetical protein VEIDISOL_01372 [Veillonella dispar ATCC 17748]
 gi|237864202|gb|EEP65492.1| hypothetical protein VEIDISOL_01372 [Veillonella dispar ATCC 17748]
          Length = 724

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/681 (53%), Positives = 482/681 (70%), Gaps = 28/681 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P+GDQP AI  L  GI   E  Q+LLG TG+GKTFTMAKVIEA+Q+P +++A
Sbjct: 14  FKVEAPFTPTGDQPTAIQSLTDGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKPTLIIA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++ID++RH
Sbjct: 74  HNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEIDKLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G  E YS++++ L++G +  + E+LS LV  QY R 
Sbjct: 134 SATMSLFERRDVIIVASVSCIYGLGDPEDYSELVLSLRLGQTKSRDEILSKLVDIQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  IRGTFRV GD+IEIFP+   + A RV +FG++I+ + E   LTG+ I   + + +Y
Sbjct: 194 DMNFIRGTFRVQGDTIEIFPAAYSERAIRVELFGDEIDRLVEVDALTGEVIVERKHVAVY 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +  +  A++ I+ EL  +L +L+   RLLEAQRLEQR  YD+EM++  G C 
Sbjct: 254 PASHYVTTKEKMKVAVERIEAELDEQLAKLKAADRLLEAQRLEQRTRYDIEMMQEMGYCS 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++ R  GE P TL +Y P+D L+ VDESHVTIPQ+  MY GD  RK +L EY
Sbjct: 314 GIENYSRHMSERKAGEAPHTLIDYFPDDFLIMVDESHVTIPQVRAMYNGDRARKESLIEY 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       + VSATPG +E+E  Q  I EQIIRPTGL+DP +E
Sbjct: 374 GFRLPSALDNRPLQFDEFVERINQIVYVSATPGPYEME-VQTNIAEQIIRPTGLLDPSIE 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EI+  A +  R+L+T LTK+MAEDLTE+L E  +RVRY+HS++ T+E
Sbjct: 433 IRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSDIVTIE 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T++IQTIGRAAR
Sbjct: 493 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN  VI+YAD +T S+Q AIDET RRR +Q  +N +HNI P+SV + + E+I+   +E+
Sbjct: 553 NVNGHVIMYADRVTGSMQRAIDETDRRRAEQEAYNIEHNITPKSVSKDVKELIELTKIEE 612

Query: 741 AATTN---------------ISID------AQQLSLSKKKGKA------HLKSLRKQMHL 773
              T+                 +D       Q +S  K            ++ L +QM  
Sbjct: 613 DMVTDGKDFSSKKGKKKSSTTGMDHGHEPYVQDISTPKVADITPEELFNKIEELDRQMKA 672

Query: 774 AADNLNFEEAARIRDEIKRLK 794
           AA  L FE+AA++RD++  L+
Sbjct: 673 AAKQLEFEKAAKLRDQLGELR 693


>gi|314981311|gb|EFT25405.1| excinuclease ABC subunit B [Propionibacterium acnes HL110PA3]
 gi|315091730|gb|EFT63706.1| excinuclease ABC subunit B [Propionibacterium acnes HL110PA4]
          Length = 701

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/690 (52%), Positives = 486/690 (70%), Gaps = 29/690 (4%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + + ++ +  F + +++ PSGDQP AIA+L K ++S E+  +LLG TG+GKT T+A + E
Sbjct: 4   VTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWLAE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VM PNK LAAQ   E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS
Sbjct: 64  KLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +NE+++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y   ++ L++G   ++ ELL 
Sbjct: 124 LNEEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDELLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV  QY R DI   RGTFRV GD++EIFP + E+ A RV  FG++IE ++  +PLTG+ 
Sbjct: 184 DLVTNQYIRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTGEV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I   E + ++  +HYV     +  A+  I++EL+ RL  LE++G+LLEAQRL  R TYD+
Sbjct: 243 ISEDEQVYVFPATHYVAGPERMERAVASIQQELEERLAVLERDGKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM++  G+C  IENYSR++ GR PG  P  L +Y PED +L +DESHVT+PQI GMY GD
Sbjct: 303 EMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL E+GFRLPS MDNRPL F+E+      T+ +SATPGS+E E+  G+ VEQIIR
Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLEFDEFTQRIGQTVYLSATPGSYETERAHGV-VEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++    Q++D+  EI     +G R+L+T LTK+MAEDLT+YL E  IR R
Sbjct: 422 PTGLVDPEIIVKPTHGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIRTR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ S
Sbjct: 482 YLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++KI 
Sbjct: 542 LIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKKIG 601

Query: 731 EVIDPILLEDAATTNI----------------------SIDAQQLSLSKKK----GKAHL 764
           ++ + +  E A T  +                      +   ++L +SK      GK  +
Sbjct: 602 DITEMLAREGADTDELFEKFNYGKGHRGYNSMITDEQRAAQGKRLDVSKMAEEDLGKL-I 660

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L  +M  AA  L FE AAR+RDEI  LK
Sbjct: 661 VDLTTEMRSAAGELKFEVAARLRDEIADLK 690


>gi|22126903|ref|NP_670326.1| excinuclease ABC subunit B [Yersinia pestis KIM 10]
 gi|45440838|ref|NP_992377.1| excinuclease ABC subunit B [Yersinia pestis biovar Microtus str.
           91001]
 gi|108813005|ref|YP_648772.1| excinuclease ABC subunit B [Yersinia pestis Nepal516]
 gi|145599810|ref|YP_001163886.1| excinuclease ABC subunit B [Yersinia pestis Pestoides F]
 gi|149366848|ref|ZP_01888882.1| excinuclease ABC subunit B [Yersinia pestis CA88-4125]
 gi|162419328|ref|YP_001605949.1| excinuclease ABC subunit B [Yersinia pestis Angola]
 gi|165924747|ref|ZP_02220579.1| UvrABC system, B protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938367|ref|ZP_02226925.1| UvrABC system, B protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011595|ref|ZP_02232493.1| UvrABC system, B protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211368|ref|ZP_02237403.1| UvrABC system, B protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167419919|ref|ZP_02311672.1| UvrABC system, B protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423960|ref|ZP_02315713.1| UvrABC system, B protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167469629|ref|ZP_02334333.1| UvrABC system, B protein [Yersinia pestis FV-1]
 gi|218928320|ref|YP_002346195.1| excinuclease ABC subunit B [Yersinia pestis CO92]
 gi|229841095|ref|ZP_04461254.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843199|ref|ZP_04463345.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229894033|ref|ZP_04509219.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Yersinia pestis Pestoides A]
 gi|229903443|ref|ZP_04518556.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Yersinia pestis Nepal516]
 gi|270487220|ref|ZP_06204294.1| excinuclease ABC, B subunit [Yersinia pestis KIM D27]
 gi|294503158|ref|YP_003567220.1| excinuclease ABC subunit B [Yersinia pestis Z176003]
 gi|20532284|sp|Q8ZGW7|UVRB_YERPE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|123246289|sp|Q1CFQ8|UVRB_YERPN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189038012|sp|A4TNQ1|UVRB_YERPP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238687290|sp|A9R3D3|UVRB_YERPG RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|21959940|gb|AAM86577.1|AE013904_1 excision nuclease subunit B [Yersinia pestis KIM 10]
 gi|45435696|gb|AAS61254.1| excinuclease ABC subunit B [Yersinia pestis biovar Microtus str.
           91001]
 gi|108776653|gb|ABG19172.1| Excinuclease ABC subunit B [Yersinia pestis Nepal516]
 gi|115346931|emb|CAL19820.1| excinuclease ABC subunit B [Yersinia pestis CO92]
 gi|145211506|gb|ABP40913.1| Excinuclease ABC subunit B [Yersinia pestis Pestoides F]
 gi|149291222|gb|EDM41297.1| excinuclease ABC subunit B [Yersinia pestis CA88-4125]
 gi|162352143|gb|ABX86091.1| UvrABC system, B protein [Yersinia pestis Angola]
 gi|165913745|gb|EDR32364.1| UvrABC system, B protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923807|gb|EDR40939.1| UvrABC system, B protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989543|gb|EDR41844.1| UvrABC system, B protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207139|gb|EDR51619.1| UvrABC system, B protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962660|gb|EDR58681.1| UvrABC system, B protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167056809|gb|EDR66572.1| UvrABC system, B protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679213|gb|EEO75316.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Yersinia pestis Nepal516]
 gi|229689546|gb|EEO81607.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229697461|gb|EEO87508.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229703918|gb|EEO90931.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Yersinia pestis Pestoides A]
 gi|262361195|gb|ACY57916.1| excinuclease ABC subunit B [Yersinia pestis D106004]
 gi|262365248|gb|ACY61805.1| excinuclease ABC subunit B [Yersinia pestis D182038]
 gi|270335724|gb|EFA46501.1| excinuclease ABC, B subunit [Yersinia pestis KIM D27]
 gi|294353617|gb|ADE63958.1| excinuclease ABC subunit B [Yersinia pestis Z176003]
 gi|320014295|gb|ADV97866.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 671

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/660 (55%), Positives = 472/660 (71%), Gaps = 6/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +++A
Sbjct: 5   FKLHSVFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ    V    +Y
Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+  G I+EQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A    R+L+T LTKRMAEDLT+YL E   +VRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTDYLSEHGAKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +KI +++    P +
Sbjct: 545 NLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERRIIPQGLNKKIGDILQLGQPSM 604

Query: 738 LEDA---ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   +  ++   Q  SLS K     ++ L  +M+  A NL FE+AA +RD++ +L+
Sbjct: 605 RGKGKGRGSHKMADTTQYQSLSPKALDQKIRELEAKMYTYAQNLEFEQAAELRDQVHQLR 664


>gi|239907002|ref|YP_002953743.1| UvrABC system protein B [Desulfovibrio magneticus RS-1]
 gi|239796868|dbj|BAH75857.1| UvrABC system protein B [Desulfovibrio magneticus RS-1]
          Length = 685

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/676 (52%), Positives = 466/676 (68%), Gaps = 22/676 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ++++Y P GDQP AI +L + +      Q LLG TG+GKTFTMA+V+  + RPA+VMA
Sbjct: 3   FQLESEYLPRGDQPQAIDELARNLDQGVPSQTLLGATGTGKTFTMAQVVAKLNRPALVMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEFK  FPHNAVEYFVSYYDYYQPEAY+PRTDTYIEK+SSIN+ ID++RH
Sbjct: 63  PNKTLAAQLYSEFKGLFPHNAVEYFVSYYDYYQPEAYLPRTDTYIEKDSSINDDIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT SLL R D ++V+SVSCIYG+GS + Y +M++ L +G+ +  +++L+ LV+ QY+R 
Sbjct: 123 AATHSLLTRRDVLIVASVSCIYGLGSRDYYERMVLTLSVGEKIGMEKVLARLVEIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD IEI P++  + A R+  F +++E I E  PLTG+ +  ++   I+
Sbjct: 183 DYDFHRGVFRVRGDVIEIIPAYARERALRLEFFDDELEAIQETDPLTGEVLGTMDKAIIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV+ R  LN A+  I+EEL++RL EL     LL AQRLE R   DLEM+E  G C 
Sbjct: 243 PASHYVSDRANLNRAVSDIREELRLRLTELRGRNDLLAAQRLEMRTMQDLEMIEELGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  G+PP TL +Y P+D +LFVDESH+T+PQI GMY GD  RK TL +Y
Sbjct: 303 GIENYSRHLDGRQAGDPPYTLLDYFPKDFILFVDESHITVPQIGGMYAGDRSRKQTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATPG WEL + +G++VEQIIRPTGL+DP VE
Sbjct: 363 GFRLPSALDNRPLNFEEFLGRIGQAVYVSATPGDWELTRSEGVVVEQIIRPTGLLDPEVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  E       G R+L+T LTKRMAE+L EY     +  RY+HS++ TLE
Sbjct: 423 VRPTKGQMDDLMAECRKRMAAGERVLVTTLTKRMAEELNEYFNSMGVTSRYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ II+ LR G+F VLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT GRAAR
Sbjct: 483 RVAIIKALRQGEFAVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTRSLIQTFGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739
           NV  +VILYAD +T+S+  A+DET RRREKQ   N++  + P+SV + +  V+D +  + 
Sbjct: 543 NVGGRVILYADNMTRSMSAAMDETARRREKQEASNRETGLTPRSVVKAMDSVLDSLYAKG 602

Query: 740 DAATTNISIDAQQL---------------------SLSKKKGKAHLKSLRKQMHLAADNL 778
           DA T + S                            +SKK  +  LK + ++M  AA  L
Sbjct: 603 DAKTGSWSASGGGYATAGGGLGAGAAVHEEAEAYGGMSKKAMERKLKQVEREMREAAKAL 662

Query: 779 NFEEAARIRDEIKRLK 794
            FE+AA+ RD+   L+
Sbjct: 663 EFEKAAQFRDQAATLR 678


>gi|304439582|ref|ZP_07399487.1| excision endonuclease subunit UvrB [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371961|gb|EFM25562.1| excision endonuclease subunit UvrB [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 656

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/654 (55%), Positives = 473/654 (72%), Gaps = 5/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI  L+KG++   K Q LLGVTGSGKTFTMA VIE +QRP +V+A
Sbjct: 3   FKIHSKFKPTGDQPEAIDGLVKGLNKGYKHQTLLGVTGSGKTFTMANVIEKVQRPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL SEFK FFP NA+EYFVSYYDYYQPEAYVP TDT+IEK+SSIN++ID++RH
Sbjct: 63  HNKTLAYQLASEFKEFFPENAIEYFVSYYDYYQPEAYVPGTDTFIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D ++V+SVSCIYG+G    Y  + + L+ G   ++ E++S LV  QY R 
Sbjct: 123 SATMALFERRDVVIVASVSCIYGLGDPIDYEHLAISLRPGMIRDRNEIMSKLVDIQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  IRGTFRV GD++E+FP+   D + R+  FG++I+ I+E   LTG     +    I 
Sbjct: 183 DINFIRGTFRVRGDTLEVFPASSSDRSIRIEFFGDEIDRITEIDTLTGNITGYLNHAFIT 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T    ++ A++ IK EL  RL EL  + +LLEAQRLEQR  YDLEML+  G C 
Sbjct: 243 PASHFATSSEKVDRAIETIKIELDERLKELRGQEKLLEAQRLEQRTNYDLEMLQEMGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PG  P TL +Y P+D LL +DESHVTIPQI GMY GD  RK TL +Y
Sbjct: 303 GIENYSRHLSGREPGSRPYTLIDYFPKDFLLIIDESHVTIPQIRGMYNGDRSRKQTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF E+  +    I VSATPG +E E  +   VEQIIRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLRFNEFESMVNQAIYVSATPGPYEKEHQEN-YVEQIIRPTGLLDPKIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN  A++G R L+T LTK+MAEDLT+Y  E  I+V YMHS+V T+E
Sbjct: 422 VRPIKGQIDDLVSEINKRAEKGERTLVTTLTKKMAEDLTKYFKELGIKVTYMHSDVDTIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG +DVL+GINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT GRAAR
Sbjct: 482 RMEIIRDLRLGVYDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTSGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YADTITKS+ + I ET RRR+ Q ++N  HNI P+++++ I +VI   +  +
Sbjct: 542 NVDGIVIMYADTITKSMDVTITETERRRKIQNQYNIDHNIVPKTIEKGIRDVIATTIASE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +  T   +D +    +  + +A ++ L+ +M+  A+ LNFE AA IRD+I+ L+
Sbjct: 602 SNET-YKVDDE---FTNDEIEAMIEGLKVRMYKEAEGLNFEAAAEIRDKIEELR 651


>gi|52082051|ref|YP_080842.1| excinuclease ABC subunit B [Bacillus licheniformis ATCC 14580]
 gi|52787440|ref|YP_093269.1| excinuclease ABC subunit B [Bacillus licheniformis ATCC 14580]
 gi|319647917|ref|ZP_08002135.1| UvrABC system protein B [Bacillus sp. BT1B_CT2]
 gi|81825174|sp|Q65ED8|UVRB_BACLD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|52005262|gb|AAU25204.1| excinuclease ABC (subunit B) [Bacillus licheniformis ATCC 14580]
 gi|52349942|gb|AAU42576.1| UvrB [Bacillus licheniformis ATCC 14580]
 gi|113927091|emb|CAK18196.1| excinuclease ABC, subunit B [Bacillus licheniformis]
 gi|113927100|emb|CAK18204.1| excinuclease ABC, subunit B [Bacillus licheniformis]
 gi|317390258|gb|EFV71067.1| UvrABC system protein B [Bacillus sp. BT1B_CT2]
          Length = 661

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/656 (56%), Positives = 473/656 (72%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI QL+KGI+   K Q LLG TG+GKTFTM+ VI+ + +P +V+A
Sbjct: 5   FELVSNYQPQGDQPKAIDQLVKGINEGRKHQTLLGATGTGKTFTMSNVIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +M++ L+    +E+ ELL  LV  QY R 
Sbjct: 125 SATSALFERKDVIIVASVSCIYGLGSPEEYREMVLSLRTEMEIERNELLRKLVDIQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ +   E + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I+EEL+ RL  L +EG+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKKAIINIEEELEERLKALREEGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHVTIPQI GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDYFPDDFLMVIDESHVTIPQIRGMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       + VSATPG +ELE     +VEQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFEEFEKHIHNIVYVSATPGPYELEHTPE-MVEQIIRPTGLLDPIIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIQQRIERNERVLVTTLTKKMSEDLTDYLKEIGIKVTYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKHDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N   +VI+YAD IT S+++AI+ET RRRE+Q  +N+KH I P+++ +KI +VI      E
Sbjct: 544 NAEGRVIMYADKITNSMEIAINETKRRREQQEAYNEKHGITPKTINKKIRDVIRATHAAE 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           D     +  + +   ++KK+ +  +  +   M  AA  L+FE AA +RD +  LKS
Sbjct: 604 DQEEYQVKEEPKLSKMTKKEREKVIAQMESDMKEAAKALDFERAAELRDLLLELKS 659


>gi|317485270|ref|ZP_07944150.1| excinuclease ABC [Bilophila wadsworthia 3_1_6]
 gi|316923396|gb|EFV44602.1| excinuclease ABC [Bilophila wadsworthia 3_1_6]
          Length = 678

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/678 (51%), Positives = 471/678 (69%), Gaps = 24/678 (3%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
           ++ +   F+++T+Y P+GDQPAAI QL   I +  + Q+LLGVTGSGKTFT+A VI  + 
Sbjct: 2   NTTETPLFKLRTEYVPTGDQPAAIEQLASNIEAGVRDQVLLGVTGSGKTFTVANVIAQVN 61

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPA+V+APNK LAAQLY+EF+  FP NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN+
Sbjct: 62  RPALVLAPNKTLAAQLYNEFRALFPENAVEYFVSYYDYYQPEAYVPASDTYIEKDSAIND 121

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
            ID++RH+AT +LL R D I+V+SVSCIYG+GS E Y+++I+ +++G  V    +++ LV
Sbjct: 122 DIDKLRHAATHALLTRRDVIIVASVSCIYGLGSPEYYARLIIPVEVGQRVSMDAIITKLV 181

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY+R D+   RGTFRV GD +E+ P++  + A R+  FG++IE + E  PLTG+ + N
Sbjct: 182 DVQYQRNDMDFHRGTFRVRGDVLEVIPAYEHERALRLEFFGDEIEAVREIDPLTGEILGN 241

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           +    IY  SHYV+ R  L  AM  +++EL  RL   + + +L+EAQRLEQR   DLEM+
Sbjct: 242 IGKTVIYPASHYVSDRDNLERAMSDVRDELGERLRLFQSQNKLVEAQRLEQRTQLDLEMM 301

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           +  G C  IENYSR+L GR  G+PP TL +Y P+D +LF DESH++IPQ+ GM++GD  R
Sbjct: 302 QELGYCTGIENYSRHLDGRKEGDPPATLLDYFPDDFVLFADESHISIPQVGGMFKGDRSR 361

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL ++GFRLPS +DNRPL F E+       + VSATPG WELE+ QGI+ EQIIRPTG
Sbjct: 362 KTTLVDFGFRLPSALDNRPLEFHEFLERLNQVVYVSATPGKWELERSQGIVAEQIIRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VE+R  + Q++D+  E     ++  R+L+T LTKRMAEDLTEYL    +  RY+H
Sbjct: 422 LLDPEVEVRPVKGQIDDLLGECRARVEKHERVLVTTLTKRMAEDLTEYLNSMGVAARYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ T+ER+ II+ LR G+FDVLVGINLLREGLDIPE  LV ILDADKEGFLRS  SLIQ
Sbjct: 482 SDIDTMERMAIIKALRAGEFDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSTGSLIQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T GRAARN   KV+LYADT+T S++ A+ ET RRR KQ + N+ H I P ++ + +    
Sbjct: 542 TFGRAARNAGGKVLLYADTVTASMRAAMGETARRRAKQQDWNETHGITPTTISKPLATPF 601

Query: 734 DPILLEDA-----------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
           D +                      A+ ++ I AQ ++        +LK   ++M  AA 
Sbjct: 602 DSLYTSSGEGKGKRGRGKQAKQPAEASASVDITAQNVA-------RYLKQFEREMRDAAR 654

Query: 777 NLNFEEAARIRDEIKRLK 794
           +L FE+AA +RD IK+L+
Sbjct: 655 DLEFEKAAALRDRIKQLR 672


>gi|332361037|gb|EGJ38841.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK1056]
          Length = 662

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/655 (54%), Positives = 473/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLGIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K+   E+ D I +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKK---EIRDLISVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALQDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|307706695|ref|ZP_07643501.1| excinuclease ABC, B subunit [Streptococcus mitis SK321]
 gi|307617939|gb|EFN97100.1| excinuclease ABC, B subunit [Streptococcus mitis SK321]
          Length = 662

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIKQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EK+G+LLE QRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAIFEKQGKLLEVQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ + II EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETII-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I  +    
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-AVTKAV 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A   +  +D    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 608 AKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|293606135|ref|ZP_06688500.1| excision endonuclease subunit UvrB [Achromobacter piechaudii ATCC
           43553]
 gi|292815590|gb|EFF74706.1| excision endonuclease subunit UvrB [Achromobacter piechaudii ATCC
           43553]
          Length = 686

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/645 (55%), Positives = 466/645 (72%), Gaps = 7/645 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y P+GDQP AI  L +GI      Q LLGVTGSGKT+TMA VI  + RPA+V+A
Sbjct: 25  FQLFQPYPPAGDQPTAIEGLTQGIEDGLMFQTLLGVTGSGKTYTMANVIAQLGRPALVLA 84

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++MR 
Sbjct: 85  PNKTLAAQLYAEMREFFPKNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRL 144

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER D I+V +VSCIYGIG+   Y  M++ L+ GD + ++E+L+ LV  QY R 
Sbjct: 145 SATKSLLERRDTIIVGTVSCIYGIGNPGDYHAMVLILRSGDQISRREILARLVAMQYTRN 204

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV G++I+IFP+   ++A R+++F ++IE +  F PLTG+  + +    +Y
Sbjct: 205 DAEFTRGVFRVRGETIDIFPAESAELALRLTLFDDEIESLELFDPLTGRIRQKLPRFTVY 264

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR T+  A++ IK EL+ R+     +G L+EAQRLEQR  +DLEML+  G C+
Sbjct: 265 PGSHYVTPRDTVLRAIETIKVELRDRVKRFVDDGHLVEAQRLEQRTRFDLEMLQELGFCK 324

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHVTI Q+S MYRGD  RK TL +Y
Sbjct: 325 GIENYSRHLSGAAPGEPPPTLIDYLPPDALMFIDESHVTIGQLSAMYRGDRSRKETLVQY 384

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+ EE+       + VSATP ++E E     +VEQ++RPTGLVDP VE
Sbjct: 385 GFRLPSAMDNRPLKLEEFEARMRQCVFVSATPAAYEKEHADN-VVEQVVRPTGLVDPLVE 443

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +  ARTQV+D+  +I      G R+L+T LTKRMAEDLT++L E  ++VRY+HS++ T+E
Sbjct: 444 VLPARTQVDDLLGQIKARVSVGERVLVTTLTKRMAEDLTDFLSEHGVKVRYLHSDIDTVE 503

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 504 RVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 563

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N   ILYAD +T S+Q A++ET+RRR KQL+ N  + I  + V++ + E+ID I+   
Sbjct: 564 NLNGHAILYADRVTDSMQRAMEETSRRRAKQLQFNIDNGITARGVRKAVRELIDGIV--- 620

Query: 741 AATTNISIDAQQLSLSKKKGKA---HLKSLRKQMHLAADNLNFEE 782
           A   + +++A   +   K  KA    LK L K M   A NL FE+
Sbjct: 621 APVQHDALEAAIPAEFLKDEKALARELKRLEKLMMDHARNLEFEQ 665


>gi|296129801|ref|YP_003637051.1| excinuclease ABC, B subunit [Cellulomonas flavigena DSM 20109]
 gi|296021616|gb|ADG74852.1| excinuclease ABC, B subunit [Cellulomonas flavigena DSM 20109]
          Length = 701

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/689 (51%), Positives = 488/689 (70%), Gaps = 27/689 (3%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + +  + +  F++ ++Y PSGDQP AI +L   + + EK  +LLG TG+GK+ T A +IE
Sbjct: 4   VTDLQRTVAPFEVVSEYTPSGDQPTAIEELAARVRAGEKDVVLLGATGTGKSATTAWLIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAY+ ++DTYIEK+SS
Sbjct: 64  ELQRPTLVMAPNKTLAAQLATEFRELLPNNAVEYFVSYYDYYQPEAYIAQSDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D +VVS+VSCIYG+G+ + Y   +V L +GD V++ +LL 
Sbjct: 124 INEEVERLRHSATSSLLTRRDVVVVSTVSCIYGLGTPQEYVDRMVTLAVGDQVDRDQLLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD++EI P + E++A R+  FG++IE I+  +PLTG  
Sbjct: 184 KFVTMQYTRNDMAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIEAIATLHPLTGDV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +R+ + + ++  +HYV     +  A+  I+ EL+ RL +LE++ +LLEAQRL+ R TYD+
Sbjct: 243 VRSEQQMHVFPATHYVAGPERMERAIAGIEAELEERLADLERQNKLLEAQRLQMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   GSC  IENYSR++ GR PG  P TL +Y PED LL +DESHVT+PQI  M+ GD
Sbjct: 303 EMMRQIGSCSGIENYSRHIDGRAPGSAPNTLLDYFPEDFLLVIDESHVTVPQIGAMFEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK +L ++GFRLPS +DNRPLR+EE+      T+ +SATPG +EL    G+ VEQIIR
Sbjct: 363 MSRKRSLVDHGFRLPSAIDNRPLRWEEFVERIGQTVYLSATPGDYELSMADGV-VEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++  + Q++D+  EI    ++  R+L+T LTK+M+EDLT+YL E+++RVR
Sbjct: 422 PTGLVDPQVVVKPTKGQIDDLLGEIRDRVERDERVLVTTLTKKMSEDLTDYLLEKDVRVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSEV TL R+E++R+LRLG++DVLVGINLLREGLD+PE  LVAILDADK+GFLRS  S
Sbjct: 482 YLHSEVDTLRRVELLRELRLGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGKS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAAR+V+ +V +YADT+T +++ A+DET RRREKQ+ +N +H I+PQ +++KI 
Sbjct: 542 LIQTIGRAARHVSGQVHMYADTVTPAMRQALDETDRRREKQIAYNLEHGIDPQPLRKKIG 601

Query: 731 EVIDPILLEDAATTNISIDA-QQLSLSK-------------------KKGKAH-----LK 765
           ++ D +  EDA T  +   A +Q S  K                       AH     ++
Sbjct: 602 DITDMLAREDADTAELLGGAGRQASRGKAPVPGLGSRPSGGDERTRLAGAAAHDLADLVQ 661

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            L +QMH AA  L FE AAR+RDEI  LK
Sbjct: 662 QLTEQMHAAAGELQFELAARLRDEISGLK 690


>gi|16080570|ref|NP_391397.1| excinuclease ABC subunit B [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221311467|ref|ZP_03593314.1| excinuclease ABC subunit B [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315794|ref|ZP_03597599.1| excinuclease ABC subunit B [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320709|ref|ZP_03602003.1| excinuclease ABC subunit B [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324994|ref|ZP_03606288.1| excinuclease ABC subunit B [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|3123297|sp|P37954|UVRB_BACSU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B; AltName: Full=Protein
           dinA
 gi|99032024|pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
           Activity Of Uvrb
 gi|126031163|pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
           Of Uvrb Bound To Fluorescein-Adducted Dna
 gi|2618841|gb|AAC67270.1| excinuclease ABC subunit B [Bacillus subtilis]
 gi|2636043|emb|CAB15534.1| excinuclease ABC (subunit B) [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 661

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/656 (54%), Positives = 477/656 (72%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L+KGI   +K Q LLG TG+GKTFT++ +I+ + +P +V+A
Sbjct: 5   FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS E Y +M+V L+    +E+ ELL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLVDIQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ + + + + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGDRDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ +L  + + G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PG  P TL +Y P+D ++ VDESHVTIPQ+ GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       + VSATPG +E+E     +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTDE-MVEQIIRPTGLLDPLID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILLE 739
           N   +VI+YAD ITKS+++AI+ET RRRE+Q   N++H I P+++ ++I +VI   +  E
Sbjct: 544 NAEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKEIRDVIRATVAAE 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           D A        +   ++KK+ +  ++ +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 DKAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKA 659


>gi|134101920|ref|YP_001107581.1| excinuclease ABC subunit B [Saccharopolyspora erythraea NRRL 2338]
 gi|133914543|emb|CAM04656.1| excinuclease ABC, subunit B [Saccharopolyspora erythraea NRRL 2338]
          Length = 700

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/688 (52%), Positives = 483/688 (70%), Gaps = 28/688 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M +DY P+GDQP AI  L + I+S E   +LLG TG+GK+ T A +IE +QRP +V+ 
Sbjct: 11  FRMVSDYQPAGDQPQAIDDLERRINSGETDVVLLGATGTGKSATTAWLIERVQRPTLVLE 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ  +E + FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSINE ++R+RH
Sbjct: 71  PNKTLAAQFANELRGFFPDNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEDVERLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R DC+VVSSVSCIYG+G+ +SY    +QL++G   ++  LL +LV  QY R 
Sbjct: 131 SATSNLLSRRDCVVVSSVSCIYGLGTPQSYLDRSIQLQVGGETDRDVLLRALVDVQYTRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++E+ P++ E++A R+ MFG++I+ +   +PLTG+ +R V+ ++I+
Sbjct: 191 DIAFARGTFRVRGDTVEVIPAY-EELAVRIEMFGDEIDRLYYLHPLTGEVVREVDELRIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A++ I+ EL  +L +LEK+ +LLEAQRL  R  YD+EM+   G C 
Sbjct: 250 PATHYVAGPERMEKAIRSIEAELDEQLAKLEKQNKLLEAQRLRMRTQYDIEMMRQVGFCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++  R  G  P TL +Y P+D LL +DESHVT+PQ+ GMY GD  RK TL E+
Sbjct: 310 GIENYSRHVDDRPAGSAPATLLDYFPDDFLLIIDESHVTVPQVGGMYEGDASRKRTLVEH 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE+      T+ +SATPG +E+ Q  G  VEQ+IRPTGLVDP V 
Sbjct: 370 GFRLPSALDNRPLTWEEFADRIGQTVYLSATPGPYEMGQAGGEFVEQVIRPTGLVDPEVV 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+  EI   A++  R+L+T LTK+MAEDLT+Y  E  IRVRY+HSEV TL 
Sbjct: 430 VKPTEGQIDDLVHEIRERAERDERVLVTTLTKKMAEDLTDYFLELGIRVRYLHSEVDTLR 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 490 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSGTSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRREKQ+ +N++  I+PQ +++KI +++D +  E 
Sbjct: 550 NVSGQVHMYADRITDSMRHAIDETNRRREKQIAYNEEKGIDPQPLRKKIADILDRVYSES 609

Query: 741 AATTNISIDAQQLSLSKKK-------GKAHL------------------KSLRKQMHLAA 775
             T  +++     ++S+ K       G A L                  + L  QM  AA
Sbjct: 610 EDTEEVAVGGSGRNVSRGKKPSGEAVGSAGLLEDRDIKSMPRAELADLVQQLNDQMMSAA 669

Query: 776 DNLNFEEAARIRDEIKRLKSSPYFQGLD 803
            +L FE AAR+RDEI+ LK     +G+D
Sbjct: 670 RDLQFELAARLRDEIQDLKKE--LRGMD 695


>gi|328946381|gb|EGG40522.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK1087]
          Length = 662

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI +L+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEKLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADTIT+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTITQSMQRAIDETARRRAIQMTYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|225868289|ref|YP_002744237.1| UvrABC system protein B (UvrB protein) [Streptococcus equi subsp.
           zooepidemicus]
 gi|259710333|sp|C0MDC6|UVRB_STRS7 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|225701565|emb|CAW98790.1| UvrABC system protein B (UvrB protein) [Streptococcus equi subsp.
           zooepidemicus]
          Length = 663

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/660 (53%), Positives = 476/660 (72%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +D   F++ + Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P
Sbjct: 5   RDFKAFKLVSKYDPSGDQPQAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL++LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNALVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ + + +
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKVLGDAD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML  
Sbjct: 245 HLVLFPATHFVTNDEHMEQSISKIQAELADQLKLFEAEGKLLEAQRLRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRSAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDKARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ    IVEQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTD-TIVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R +  Q++D+  EINL  ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRIERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN +  VI+YAD +T S+Q AIDET RRR  Q+ +N++H I PQ++K+ I ++I  
Sbjct: 544 GRAARNADGHVIMYADRMTDSMQRAIDETARRRAIQMAYNEEHGIIPQTIKKDIRDLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               +A  T    + + ++ S++  +  +K L+K M  AA+ L+FE AA++RD I  LK+
Sbjct: 604 SRAVEAKATEAETNYESMTRSER--QEAIKQLQKNMQEAAELLDFELAAQLRDLILELKA 661


>gi|315221703|ref|ZP_07863619.1| excinuclease ABC subunit B [Streptococcus anginosus F0211]
 gi|315189190|gb|EFU22889.1| excinuclease ABC subunit B [Streptococcus anginosus F0211]
          Length = 662

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/658 (54%), Positives = 473/658 (71%), Gaps = 10/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI+ + +P +V+A
Sbjct: 10  FKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIQKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFMTNDENMEIAIGKIQAELEEQLAFFEKEGKLLEAQRLKQRTDYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ VDESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMVDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEREQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N    VI+YADTIT S+Q A+DET RRR+ Q+ +N++H I PQ+++++I ++I      L
Sbjct: 549 NSEGHVIMYADTITDSMQKAMDETARRRQIQMAYNEEHGIVPQTIQKEIRDLISVTKSAL 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +     +I       SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 609 PDKGEVVDIE------SLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|313809797|gb|EFS47518.1| excinuclease ABC subunit B [Propionibacterium acnes HL083PA1]
          Length = 701

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/690 (52%), Positives = 487/690 (70%), Gaps = 29/690 (4%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + + ++ +  F + +++ PSGDQP AIA+L K ++S E+  +LLG TG+GKT T+A + E
Sbjct: 4   VTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWLAE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VM PNK LAAQ   E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS
Sbjct: 64  RLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +N++++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y   ++ L++G   ++ ELL 
Sbjct: 124 LNKEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDELLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV  QY R DI   RGTFRV GD++EIFP + E+ A RV  FG++IE ++  +PLTG+ 
Sbjct: 184 DLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTGEI 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I   E + ++  +HYV     +  A+  I++EL+ RL  LE++G+LLEAQRL  R TYD+
Sbjct: 243 ISEDEQVYVFPATHYVAGPERMERAIASIQQELEERLAVLERDGKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM++  G+C  IENYSR++ GR PG  P  L +Y PED +L +DESHVT+PQI GMY GD
Sbjct: 303 EMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL E+GFRLPS MDNRPL+F+E+      T+ +SATPGS+E E+  G+ VEQIIR
Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERAHGV-VEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++  R Q++D+  EI     +G R+L+T LTK+MAEDLT+YL E  IR R
Sbjct: 422 PTGLVDPEIIVKPTRGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIRTR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ S
Sbjct: 482 YLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++KI 
Sbjct: 542 LIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKKIG 601

Query: 731 EVIDPILLEDAATTNI----------------------SIDAQQLSLSKKK----GKAHL 764
           ++ + +    A T  +                      +   ++L +SK      GK  +
Sbjct: 602 DITEMLARGGADTDELVEKFNYGKGHRGYNSMITDEQRAAQGRRLDVSKMAEEDLGKL-I 660

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L  +M  AA  L FE AAR+RDEI  LK
Sbjct: 661 VDLTTEMRSAAGELKFEVAARLRDEIADLK 690


>gi|307709471|ref|ZP_07645928.1| excinuclease ABC, B subunit [Streptococcus mitis SK564]
 gi|307619785|gb|EFN98904.1| excinuclease ABC, B subunit [Streptococcus mitis SK564]
          Length = 662

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/648 (54%), Positives = 471/648 (72%), Gaps = 4/648 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+V     +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVINDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I  +    
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI-AVTKAV 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           A   +  +D    SL+K++ K  +K L KQM  A + L+FE AA+IRD
Sbjct: 608 AKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRD 653


>gi|108807059|ref|YP_650975.1| excinuclease ABC subunit B [Yersinia pestis Antiqua]
 gi|167400431|ref|ZP_02305944.1| UvrABC system, B protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|123072880|sp|Q1C942|UVRB_YERPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|108778972|gb|ABG13030.1| Excinuclease ABC subunit B [Yersinia pestis Antiqua]
 gi|167050380|gb|EDR61788.1| UvrABC system, B protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
          Length = 671

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/660 (55%), Positives = 472/660 (71%), Gaps = 6/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +++A
Sbjct: 5   FKLHSVFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGVPDLYLKMMLHLTRGMIIDQRSILRRLSELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ    V    +Y
Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+  G I+EQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A    R+L+T LTKRMAEDLT+YL E   +VRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTDYLSEHGAKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +KI +++    P +
Sbjct: 545 NLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERRIIPQGLNKKIGDILQLGQPSM 604

Query: 738 LEDA---ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   +  ++   Q  SLS K     ++ L  +M+  A NL FE+AA +RD++ +L+
Sbjct: 605 RGKGKGRGSHKMADTTQYQSLSPKALDQKIRELEAKMYTYAQNLEFEQAAELRDQVHQLR 664


>gi|15675262|ref|NP_269436.1| excinuclease ABC subunit B [Streptococcus pyogenes M1 GAS]
 gi|71910888|ref|YP_282438.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS5005]
 gi|209559562|ref|YP_002286034.1| excinuclease ABC subunit B [Streptococcus pyogenes NZ131]
 gi|306827162|ref|ZP_07460452.1| excision endonuclease subunit UvrB [Streptococcus pyogenes ATCC
           10782]
 gi|20532293|sp|Q99ZA5|UVRB_STRP1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226698342|sp|B5XLX7|UVRB_STRPZ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|13622435|gb|AAK34157.1| putative excinuclease ABC (subunit B) [Streptococcus pyogenes M1
           GAS]
 gi|71853670|gb|AAZ51693.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS5005]
 gi|209540763|gb|ACI61339.1| Excinuclease ABC (Subunit B), helicase subunit of the DNA excision
           repair complex [Streptococcus pyogenes NZ131]
 gi|304430618|gb|EFM33637.1| excision endonuclease subunit UvrB [Streptococcus pyogenes ATCC
           10782]
          Length = 663

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/657 (54%), Positives = 474/657 (72%), Gaps = 9/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + +  LL+ LV  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTG+ I  V+ + ++
Sbjct: 190 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVDHLVLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML   G   
Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 310 GVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+ Q   II EQIIRPTGL+DP ++
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGEYEMSQTNTII-EQIIRPTGLLDPEID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +RS+  Q++D+  EIN    +  R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRSSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I  +I       
Sbjct: 549 NVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI----- 603

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + T++  I  +++   S+S+ + K  + +L+KQM  AA+ L+FE AA++RD I  LK
Sbjct: 604 SKTSHNDISKEEMDYESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660


>gi|321313063|ref|YP_004205350.1| excinuclease ABC subunit B [Bacillus subtilis BSn5]
 gi|291486068|dbj|BAI87143.1| excinuclease ABC subunit B [Bacillus subtilis subsp. natto BEST195]
 gi|320019337|gb|ADV94323.1| excinuclease ABC subunit B [Bacillus subtilis BSn5]
          Length = 661

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/656 (54%), Positives = 477/656 (72%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L+KGI   +K Q LLG TG+GKTFT++ +I+ + +P +V+A
Sbjct: 5   FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS E Y +M+V L+    +E+ ELL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLVDIQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ + + + + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ +L  + + G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PG  P TL +Y P+D ++ VDESHVTIPQ+ GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       + VSATPG +E+E     +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTDE-MVEQIIRPTGLLDPLID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILLE 739
           N   +VI+YAD ITKS+++AI+ET RRRE+Q   N++H I P+++ ++I +VI   +  E
Sbjct: 544 NAEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKEIRDVIRATVAAE 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           D A        +   ++KK+ +  ++ +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 DKAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKA 659


>gi|148927424|ref|ZP_01810941.1| excinuclease ABC, B subunit [candidate division TM7 genomosp. GTL1]
 gi|147887215|gb|EDK72680.1| excinuclease ABC, B subunit [candidate division TM7 genomosp. GTL1]
          Length = 656

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/655 (54%), Positives = 463/655 (70%), Gaps = 6/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++T Y P+GD P AIAQL+ G+   EK Q LLGVTGSGKTFTMA +I+  Q P +V+A
Sbjct: 4   FNLKTTYEPTGDXPTAIAQLVSGLDKGEKTQTLLGVTGSGKTFTMANIIQQRQAPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+SEFK+FFP N V YFVSY+DYYQPEAY+  +DTYIEK+S INE+IDR+RH
Sbjct: 64  HNKTLAAQLFSEFKSFFPENXVHYFVSYFDYYQPEAYIASSDTYIEKDSKINEEIDRLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R D I+V+SVSCIYGIGS   Y  M + +K G+   Q + +  L   QY R 
Sbjct: 124 AATAALLTRRDVIIVASVSCIYGIGSPGDYGNMAITVKRGERRAQNKFIRWLTDIQYHRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   R  FRV GD +++FP+  E  A+R+  FG+D++ ++E  PLTG+ I   + I I+
Sbjct: 184 DIDFSRSAFRVRGDVVDVFPAGGE-TAYRIEFFGDDVDRLTEINPLTGEIINEPDRITIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  L  A++ I+ ELK RL   E+ G+LLEAQRL QR  YDLEMLE TG  +
Sbjct: 243 PGSHYVTPQDKLKVAIERIRSELKDRLAYFEQSGKLLEAQRLGQRTKYDLEMLEETGFVK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLT R PGE P TL +Y P+D LL +DESH+TIPQ+ GMY GD  RK  L E+
Sbjct: 303 GIENYSRYLTDREPGEQPATLLDYFPDDFLLLIDESHMTIPQVRGMYNGDRARKEILVEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       I VSATPG +EL +      +Q+IRPTGL+DPP+E
Sbjct: 363 GFRLPSALDNRPLTFTEFENHINKVIFVSATPGEYELXRSPE-PAQQVIRPTGLLDPPIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    ++  R+L+T LTKRMAEDL+ YL E  I+  Y+HS++ TLE
Sbjct: 422 VRKTKGQIDDLIAEIRDRTEKRQRVLVTTLTKRMAEDLSNYLLELQIKTAYIHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +I+RDLRLG +DVLVGINLLREGLD+PE  LVAI+DADKEGFLRS ++LIQT+GRAAR
Sbjct: 482 RSDILRDLRLGIYDVLVGINLLREGLDLPEVSLVAIMDADKEGFLRSGSALIQTVGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           + N +VI+YADTITKS+Q AIDET RRRE Q  +NK+HNI P+ V + I E +  I+   
Sbjct: 542 HENGQVIMYADTITKSMQYAIDETNRRREIQEAYNKEHNITPRGVDKVIDEGLRAIIPMK 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  +D +++    K    HL + L  QM LAA NL FE+AA +RD ++ +K
Sbjct: 602 EEEKKPKVDLKKIP---KDEYGHLVRELTAQMELAAANLEFEKAAELRDTVEEIK 653


>gi|291009196|ref|ZP_06567169.1| excinuclease ABC subunit B [Saccharopolyspora erythraea NRRL 2338]
          Length = 717

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/688 (52%), Positives = 483/688 (70%), Gaps = 28/688 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M +DY P+GDQP AI  L + I+S E   +LLG TG+GK+ T A +IE +QRP +V+ 
Sbjct: 28  FRMVSDYQPAGDQPQAIDDLERRINSGETDVVLLGATGTGKSATTAWLIERVQRPTLVLE 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ  +E + FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSINE ++R+RH
Sbjct: 88  PNKTLAAQFANELRGFFPDNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R DC+VVSSVSCIYG+G+ +SY    +QL++G   ++  LL +LV  QY R 
Sbjct: 148 SATSNLLSRRDCVVVSSVSCIYGLGTPQSYLDRSIQLQVGGETDRDVLLRALVDVQYTRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++E+ P++ E++A R+ MFG++I+ +   +PLTG+ +R V+ ++I+
Sbjct: 208 DIAFARGTFRVRGDTVEVIPAY-EELAVRIEMFGDEIDRLYYLHPLTGEVVREVDELRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A++ I+ EL  +L +LEK+ +LLEAQRL  R  YD+EM+   G C 
Sbjct: 267 PATHYVAGPERMEKAIRSIEAELDEQLAKLEKQNKLLEAQRLRMRTQYDIEMMRQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++  R  G  P TL +Y P+D LL +DESHVT+PQ+ GMY GD  RK TL E+
Sbjct: 327 GIENYSRHVDDRPAGSAPATLLDYFPDDFLLIIDESHVTVPQVGGMYEGDASRKRTLVEH 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE+      T+ +SATPG +E+ Q  G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSALDNRPLTWEEFADRIGQTVYLSATPGPYEMGQAGGEFVEQVIRPTGLVDPEVV 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+  EI   A++  R+L+T LTK+MAEDLT+Y  E  IRVRY+HSEV TL 
Sbjct: 447 VKPTEGQIDDLVHEIRERAERDERVLVTTLTKKMAEDLTDYFLELGIRVRYLHSEVDTLR 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSGTSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRREKQ+ +N++  I+PQ +++KI +++D +  E 
Sbjct: 567 NVSGQVHMYADRITDSMRHAIDETNRRREKQIAYNEEKGIDPQPLRKKIADILDRVYSES 626

Query: 741 AATTNISIDAQQLSLSKKK-------GKAHL------------------KSLRKQMHLAA 775
             T  +++     ++S+ K       G A L                  + L  QM  AA
Sbjct: 627 EDTEEVAVGGSGRNVSRGKKPSGEAVGSAGLLEDRDIKSMPRAELADLVQQLNDQMMSAA 686

Query: 776 DNLNFEEAARIRDEIKRLKSSPYFQGLD 803
            +L FE AAR+RDEI+ LK     +G+D
Sbjct: 687 RDLQFELAARLRDEIQDLKKE--LRGMD 712


>gi|210608828|ref|ZP_03288024.1| hypothetical protein CLONEX_00203 [Clostridium nexile DSM 1787]
 gi|210152894|gb|EEA83900.1| hypothetical protein CLONEX_00203 [Clostridium nexile DSM 1787]
          Length = 662

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/654 (54%), Positives = 476/654 (72%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL+KG     + Q LLG TGSGKTFTMA VI  + RP +V+A
Sbjct: 4   FELVSEYTPTGDQPQAIDQLVKGFKEGNQCQTLLGATGSGKTFTMANVIAQLNRPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+N+VE F+SYYDYYQPEAYVP +DTYI K+SSIN++ID++RH
Sbjct: 64  HNKTLAAQLYGEFKEFFPNNSVELFMSYYDYYQPEAYVPSSDTYIAKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E+++ L++ QY R 
Sbjct: 124 SATAALSERRDVIIVASVSCIYGLGSPIDYQEMVISLRPGMIKDRDEVVAKLIEIQYDRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EIFP+  ED A RV  FG+++E I+E   LTG+    ++ + I+
Sbjct: 184 DMDFKRGTFRVRGDVLEIFPAVSEDYAIRVEFFGDEVERITEIDVLTGEIKNALKHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  +  L+ A K I+EEL+ R+   + E +LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 244 PASHYVVSKEALDRATKAIEEELEERVRYFKGEDKLLEAQRIAERTNFDIEMMRETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PG+PP TL +Y P+D L+ +DESH TIPQI GMY GD  RK+TL +Y
Sbjct: 304 GIENYSRHLTGLAPGQPPHTLIDYFPDDFLIMIDESHKTIPQIGGMYMGDQSRKSTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       + VSATPG +E E+ + + V+QIIRPTGL+DP VE
Sbjct: 364 GFRLPSAKDNRPLNFEEFESKVNQMLFVSATPGEYE-EKNELLRVDQIIRPTGLLDPEVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N    +  +IL+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ TLE
Sbjct: 423 VRPVEGQIDDLVGEVNKEIAKKNKILITTLTKRMAEDLTDYMRELGIRVKYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD +T+S++ AI ET RRR+ Q+ +N++H I PQ+VK+ + ++I   + + 
Sbjct: 543 NADGHVIMYADHVTESMEKAIQETERRRKIQMAYNEEHGITPQTVKKSVRDLIS--ISKK 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A   + ++    S+S+K+ +  +K + KQM  AA  LNFE AA +RD++  LK
Sbjct: 601 VAAEELRLEKDPESMSEKELEKLIKDVTKQMKKAAAELNFEAAAELRDKLIELK 654


>gi|297198919|ref|ZP_06916316.1| excinuclease ABC, B subunit [Streptomyces sviceus ATCC 29083]
 gi|197711160|gb|EDY55194.1| excinuclease ABC, B subunit [Streptomyces sviceus ATCC 29083]
          Length = 711

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/698 (52%), Positives = 484/698 (69%), Gaps = 36/698 (5%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           +++  + +  F++ + Y PSGDQPAAIA+L K I + EK  +LLG TG+GK+ T A +IE
Sbjct: 4   VSHIERTVAPFEVVSSYQPSGDQPAAIAELAKRIEAGEKDVVLLGATGTGKSATTAWMIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 64  KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V L++GD +++ +LL 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLRVGDEIDRDQLLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ 
Sbjct: 184 RFVDIQYTRNDLAFSRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEI 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I + E + ++  SHYV     +  A+  I++EL  RL ELEK+G+LLEAQRL  R TYDL
Sbjct: 243 ISDDEHLYVFPASHYVAGPERMERAVNDIEKELGERLAELEKQGKLLEAQRLRMRTTYDL 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML   GSC  +ENYS +  GR PG PP TL +Y P+D LL +DESHVT+PQI  MY GD
Sbjct: 303 EMLRQIGSCSGVENYSMHFDGRLPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G +VEQIIR
Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFTERIGQTVYLSATPGKYELSRGDG-VVEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+VR
Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRTRTEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS
Sbjct: 482 YLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +NK+  I+PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQVAYNKERGIDPQPLRKKIN 601

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSL---------------------RK 769
           +++  I  ED  T  +     +     K  KA + +L                     R 
Sbjct: 602 DIVAQIAREDVDTEQLLGSGYRQGKDGKAAKAPVPALGGKAAGTKAARGKAKETVPTDRP 661

Query: 770 QMHLAAD-------------NLNFEEAARIRDEIKRLK 794
              LA               +L FE AAR+RDE+  +K
Sbjct: 662 AAELAGQIEEMTARMRAAAADLQFEIAARLRDEVSEMK 699


>gi|325695926|gb|EGD37817.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK160]
          Length = 662

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  ++ L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVISLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLGIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|238763842|ref|ZP_04624800.1| UvrABC system protein B [Yersinia kristensenii ATCC 33638]
 gi|238697972|gb|EEP90731.1| UvrABC system protein B [Yersinia kristensenii ATCC 33638]
          Length = 680

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/662 (55%), Positives = 472/662 (71%), Gaps = 9/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +++ P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +V+
Sbjct: 14  LFKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVL 73

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR
Sbjct: 74  APNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 133

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R
Sbjct: 134 LSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLSELQYSR 193

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ    V    +
Sbjct: 194 NDQVFQRGTFRVRGEVIDIFPAESDEWAVRVELFDEEVERLSIFDPLTGQLQHEVPRFTV 253

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  AM+ IK EL  R   L    +L+E QR+ QR  +DLEM+   G C
Sbjct: 254 YPKTHYVTPRERILQAMEDIKVELAERRQVLLANNKLVEEQRITQRTQFDLEMMNELGYC 313

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL E
Sbjct: 314 SGIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVE 373

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+  G I+EQ++RPTGL+DP +
Sbjct: 374 YGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLI 433

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+
Sbjct: 434 EVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLVEHGARVRYLHSDIDTV 493

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 494 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 553

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736
           RN+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +K+ +++    P 
Sbjct: 554 RNLNGKAILYGDRITASMEKAIGETQRRRAKQQTYNEERGIIPQGLNKKVGDILQLGQPS 613

Query: 737 LLEDAATTNISI----DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           L          +    D Q  SL+ K     ++ L  +M+  A NL FE+AA +RD++ +
Sbjct: 614 LRGKGKGRGGKVVDTHDYQ--SLAPKALDQKIRELEAKMYTHAQNLEFEQAAELRDQVHQ 671

Query: 793 LK 794
           L+
Sbjct: 672 LR 673


>gi|229164103|ref|ZP_04292039.1| UvrABC system protein B [Bacillus cereus R309803]
 gi|228619339|gb|EEK76229.1| UvrABC system protein B [Bacillus cereus R309803]
          Length = 658

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL++RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEVRLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +NK+H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNKEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +   ++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 EPETYEATPTKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|94994564|ref|YP_602662.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS10750]
 gi|189038003|sp|Q1J665|UVRB_STRPF RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|94548072|gb|ABF38118.1| Excinuclease ABC subunit B [Streptococcus pyogenes MGAS10750]
          Length = 663

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/657 (54%), Positives = 474/657 (72%), Gaps = 9/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + +  LL+ LV  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTG+ I  V+ + ++
Sbjct: 190 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVDHLVLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML   G   
Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 310 GVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+ Q   II EQIIRPTGL+DP ++
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGEYEMSQTNTII-EQIIRPTGLLDPEID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +RS+  Q++D+  EIN    +  R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRSSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGIFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I  +I       
Sbjct: 549 NVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI----- 603

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + T++  I  +++   S+S+ + K  + +L+KQM  AA+ L+FE AA++RD I  LK
Sbjct: 604 SKTSHNDISKEEMDYESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660


>gi|331266286|ref|YP_004325916.1| excinuclease ABC subunit B [Streptococcus oralis Uo5]
 gi|326682958|emb|CBZ00575.1| excinuclease ABC subunit B [Streptococcus oralis Uo5]
          Length = 662

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FNLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG F V GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFSVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ + +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I  +    
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIIPQTIKKEIRDLI-AVTKAV 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A   +  +D    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 608 AKEEDKEVDIN--SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|145224140|ref|YP_001134818.1| excinuclease ABC subunit B [Mycobacterium gilvum PYR-GCK]
 gi|145216626|gb|ABP46030.1| Excinuclease ABC subunit B [Mycobacterium gilvum PYR-GCK]
          Length = 719

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/690 (52%), Positives = 482/690 (69%), Gaps = 30/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQPAAI +L + I + EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 28  FEVVSEYEPAGDQPAAIEELERRIRAGEKDVVLLGATGTGKSATTAWLIERLQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 88  PNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+GD V +  LL  LV  QY R 
Sbjct: 148 SATSNLLSRRDVVVVASVSCIYGLGTPQSYMDRSVELKVGDEVPRDSLLRLLVDVQYTRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI PS+ E++A R+  FG++IEE+   +PLTG  IR V++++I+
Sbjct: 208 DMSFTRGTFRVRGDTVEIIPSY-EELAVRIEFFGDEIEELYYLHPLTGDIIRKVDSLRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+ EL+ RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 267 PATHYVAGPERMAAAISTIEAELEARLAELEGQGKLLEAQRLRMRTNYDIEMMRQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED LL +DESHVT+PQI GMY GD  RK  L ++
Sbjct: 327 GIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVDF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE+      T+ +SATPG++EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSAVDNRPLTWEEFADRIGQTVYLSATPGNFELAQTGGEFVEQVIRPTGLVDPQVI 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 447 VKPTKGQIDDLIGEIRKRTERDERVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVL+GINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSPRSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRR KQ+ +N +  I+PQ +++KI +++D +  E 
Sbjct: 567 NVSGEVHMYADKITDSMKQAIDETERRRAKQIAYNTERGIDPQPLRKKIADILDQVYREA 626

Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773
             T  + I     + S+ +      G+A                      +K L  QM  
Sbjct: 627 DDTEAVEIGGSGRNASRGRRAPGEPGRAVSAGVYEGRDTKNMPRAELADLIKDLTAQMMA 686

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE AARIRDEI+ LK     +G+D
Sbjct: 687 AARDLQFELAARIRDEIQDLKKE--LRGMD 714


>gi|24379265|ref|NP_721220.1| excinuclease ABC subunit B [Streptococcus mutans UA159]
 gi|81844376|sp|Q8CWX7|UVRB_STRMU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|24377182|gb|AAN58526.1|AE014922_1 excinuclease ABC (subunit B); helicase subunit of the DNA excision
           repair complex [Streptococcus mutans UA159]
          Length = 663

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/660 (53%), Positives = 476/660 (72%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           KD   F + + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI+ + +P
Sbjct: 5   KDNNQFHLVSKYEPSGDQPEAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+    + + +LL+ LV  
Sbjct: 125 DKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPSQEISRDQLLNDLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGRVLGEVD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I+  +H++T    +  A+  I++E+K ++   E EG+L+EAQR+ QR  YD+EML  
Sbjct: 245 HLAIFPATHFMTNDEHMEVAIAKIQKEMKEQVRLFEAEGKLIEAQRIRQRTEYDVEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTSGVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKE 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L  YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ   +I EQIIRPTGL+
Sbjct: 365 MLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTDTVI-EQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R    Q++D+  EIN  A +G R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPTMGQMDDLLGEINTRADKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN    VI+YADT+T+S++ AIDET RRR+ Q+ +N++H I PQ++K+ I ++I  
Sbjct: 544 GRAARNSQGHVIMYADTVTQSMRRAIDETHRRRQIQMAYNEEHGIIPQTIKKDIRDLIAI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               D+     ++D    +++K + +  +K L+KQM  AA+ L+FE AA+IRD +  LK+
Sbjct: 604 TKANDSEVAEEAVDYN--AMTKSERQEAIKKLQKQMQEAAELLDFELAAQIRDMVLELKA 661


>gi|313833928|gb|EFS71642.1| excinuclease ABC subunit B [Propionibacterium acnes HL056PA1]
          Length = 701

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/690 (52%), Positives = 487/690 (70%), Gaps = 29/690 (4%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + + ++ +  F + +++ PSGDQP AIA+L K ++S E+  +LLG TG+GKT T+A + E
Sbjct: 4   VTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWLAE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VM PNK LAAQ   E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS
Sbjct: 64  RLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +N++++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y   ++ L++G   ++ ELL 
Sbjct: 124 LNKEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDELLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV  QY R DI   RGTFRV GD++EIFP + E+ A RV  FG++IE ++  +PLTG+ 
Sbjct: 184 DLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTGEI 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I   E + ++  +HYV     +  A+  I++EL+ RL  LE++G+LLEAQRL  R TYD+
Sbjct: 243 ISEDEQVYVFPATHYVAGPERMERAIASIQQELEERLAVLERDGKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM++  G+C  IENYSR++ GR PG  P  L +Y PED +L +DESHVT+PQI GMY GD
Sbjct: 303 EMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL E+GFRLPS MDNRPL+F+E+      T+ +SATPGS+E E+  G+ VEQIIR
Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERAHGV-VEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++  R Q++D+  EI     +G R+L+T LTK+MAEDLT+YL E  IR R
Sbjct: 422 PTGLVDPEIIVKPTRGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIRTR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ S
Sbjct: 482 YLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQ +GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++KI 
Sbjct: 542 LIQPVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKKIG 601

Query: 731 EVIDPILLEDAATTNI----------------------SIDAQQLSLSKKK----GKAHL 764
           ++ + +  E A T  +                      +   ++L +SK      GK  +
Sbjct: 602 DITEMLAREGADTDELVEKFNYGKGHRGYNSMITDEQRAAQGRRLDVSKMAEEDLGKL-I 660

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L  +M  AA  L FE AAR+RDEI  LK
Sbjct: 661 VDLTTEMRSAAGELKFEVAARLRDEIADLK 690


>gi|324992740|gb|EGC24660.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK405]
 gi|324994614|gb|EGC26527.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK678]
 gi|327462476|gb|EGF08800.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK1]
 gi|327474331|gb|EGF19737.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK408]
 gi|327489718|gb|EGF21508.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK1058]
          Length = 662

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/655 (54%), Positives = 473/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTR 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  A   L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAVGLLDFELAAQIRDMILEIKA 660


>gi|327470841|gb|EGF16297.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK330]
          Length = 662

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSRYDPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI   A++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEITARAEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|238753329|ref|ZP_04614692.1| UvrABC system protein B [Yersinia ruckeri ATCC 29473]
 gi|238708282|gb|EEQ00637.1| UvrABC system protein B [Yersinia ruckeri ATCC 29473]
          Length = 672

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/662 (54%), Positives = 470/662 (70%), Gaps = 7/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +++ P+GDQP AI QL +G+ +    Q LLGVTGSGKTFT+A VI  + RP +++
Sbjct: 4   LFKLHSEFKPAGDQPEAIRQLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMIL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR
Sbjct: 64  APNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R
Sbjct: 124 LSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLAELQYAR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RGTFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTGQ  + +    +
Sbjct: 184 NDQAFQRGTFRVRGEVIDIFPAESDELALRVELFDEEVERLSLFDPLTGQLQQEIARFTV 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  AM+ IK EL  R   L +  +L+E QR+ QR  +DLEM+   G C
Sbjct: 244 YPKTHYVTPRERILQAMEDIKVELAQRRKVLLENNKLIEEQRIAQRTQFDLEMMNELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL E
Sbjct: 304 SGIENYSRYLSGRGEGEAPPTLFDYLPPDGLLIVDESHVTIPQIGGMYKGDRSRKETLVE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+    +VEQ++RPTGL+DP +
Sbjct: 364 YGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSADEVVEQVVRPTGLLDPII 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQ++D+  EI   A    R+L+T LTKRMAEDLT+YL E   RVRY+HS++ T+
Sbjct: 424 EVRPVATQIDDLLSEIRQRAAINERVLVTTLTKRMAEDLTDYLVEHGERVRYLHSDIDTV 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 484 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736
           RN+N K ILY D IT S++ AI ET RRREKQ  HN+   I PQ + +K+ +++    P 
Sbjct: 544 RNLNGKAILYGDRITASMEKAISETERRREKQQAHNEALGIVPQGLNKKVGDILQLGQPS 603

Query: 737 LLEDA----ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           L   A            A   +L+ K     +  L  QM+  A NL FE+AA +RD++ +
Sbjct: 604 LRGKARGKHGKAAAESAAAYDALTPKALDRKISELEAQMYTHAQNLEFEQAAELRDQVHK 663

Query: 793 LK 794
           L+
Sbjct: 664 LR 665


>gi|327460184|gb|EGF06521.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK1057]
          Length = 662

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 473/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q  +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQTAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|227529561|ref|ZP_03959610.1| excision endonuclease subunit UvrB [Lactobacillus vaginalis ATCC
           49540]
 gi|227350520|gb|EEJ40811.1| excision endonuclease subunit UvrB [Lactobacillus vaginalis ATCC
           49540]
          Length = 682

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/663 (52%), Positives = 469/663 (70%), Gaps = 13/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI +L  GI   EK Q+LLG TG+GKTFT++ VI  + +P ++++
Sbjct: 10  FELVSDYKPTGDQPEAIKELTTGIEKGEKAQILLGATGTGKTFTISNVIAKVNKPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID +RH
Sbjct: 70  HNKTLAGQLYSEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDELRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ER+D IVV+SVS I+G+G    Y   +V L++G  +E+  LL  LV  Q++R 
Sbjct: 130 SATSSLMERDDVIVVASVSSIFGLGDPSEYHNHVVSLRVGQEIERDRLLRELVNIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ED A R+  FG++I+ I E   LTG+ I + E I I+
Sbjct: 190 DIDFQRGRFRVHGDVVEVFPASREDKALRIEFFGDEIDRIREVDALTGEVIGDREHISIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +   EG+LLEA+R++QR TYD+EML   G C 
Sbjct: 250 PATHFLTSEEIMDRALPQIENDMKKQVKKFTDEGKLLEAERIQQRTTYDIEMLREMGYCN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+ GR PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRYMDGRKPGEPPYTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + +SATPG +E+ Q    +V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLAEFEKHVNQVVYMSATPGPYEMAQTDH-VVQQIIRPTGLLDPTIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+M+EDLT+YL +  ++V+Y+HS++KTLE
Sbjct: 429 VRPVMGQIDDLVGEINKRIEKHERVFVTTLTKKMSEDLTDYLKDLGLKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADT+T S+Q AIDET RRRE Q+ +N+KH I P+++ + I E I       
Sbjct: 549 NANGSVIMYADTVTDSMQKAIDETKRRREIQIAYNRKHGITPKTIIKPIQETISST---- 604

Query: 741 AATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             T +I  +A            L++      ++ L +QM  AA  L+FE+AA +RD I  
Sbjct: 605 TKTEDIGKEADSTEFTTKDFAKLNRDDQTKMVEELTEQMRTAAKRLDFEQAATLRDTIME 664

Query: 793 LKS 795
           LK+
Sbjct: 665 LKA 667


>gi|291520741|emb|CBK79034.1| excinuclease ABC, B subunit [Coprococcus catus GD/7]
          Length = 663

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/654 (54%), Positives = 466/654 (71%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL+KG     + + LLGVTGSGKTFTMA VI  + +P +++A
Sbjct: 4   FELVSEYAPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH
Sbjct: 64  HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+VSSVSCIYG+GS   Y +M++ L+ G   ++ E++  L+  QY R 
Sbjct: 124 SATAALSERRDVIIVSSVSCIYGLGSPIDYQEMVISLRPGMLKDRDEVIRKLIDIQYVRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EIFP++  D A RV  FG++I+ I+EF  LTG     +E + I+
Sbjct: 184 DMDFKRGTFRVRGDVVEIFPANATDTAVRVEFFGDEIDRITEFDALTGNVKARLEHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I+EELK R+   + E +LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 244 PASHYVVAPEKMEKAISAIEEELKERVEWFKHEDKLLEAQRIAERTKFDIEMMRETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G  PGEPP TL +Y P+D L+ VDESH+TIPQ+ GMY GD  RK TL +Y
Sbjct: 304 GIENYSRHLSGLKPGEPPHTLLDYFPDDFLMIVDESHITIPQVRGMYAGDQSRKTTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F+E+       + VSATP  +E E  + +  EQ+IRPTGL+DP + 
Sbjct: 364 GFRLPSAKDNRPLNFDEFESHISQMLFVSATPNVYEGEH-ELLRAEQVIRPTGLLDPEIS 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N   + G ++L+T LTKRMAEDLT+Y+ E  IRVRY+HS++ TLE
Sbjct: 423 VRPVEGQIDDLISEVNKEIEHGHKVLITTLTKRMAEDLTDYMKELGIRVRYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+R+LRL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RSEIVRNLRLNVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S+  AI ET RRR  Q  +N+ H I P+++++ + ++I      D
Sbjct: 543 NTEGHVIMYADRITDSMDKAITETNRRRAIQQAYNEAHGITPKTIQKAVRDLISISEAAD 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +  N   DA+  S+S K+  A ++ L KQMH AA  L+FE+AA +RD+I  LK
Sbjct: 603 KSEDNFVKDAE--SMSYKELNAAIRKLTKQMHSAAAELDFEKAAMLRDKIMELK 654


>gi|331268610|ref|YP_004395102.1| exconuclease ABC subunit B [Clostridium botulinum BKT015925]
 gi|329125160|gb|AEB75105.1| exconuclease ABC, B subunit [Clostridium botulinum BKT015925]
          Length = 663

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/654 (54%), Positives = 471/654 (72%), Gaps = 4/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  + KGI   +K Q LLGVTGSGKTFTMA +IE +Q+P +V+A
Sbjct: 11  FKIHSVYKPTGDQPKAIKSISKGILEGDKFQTLLGVTGSGKTFTMANIIEKVQKPTLVLA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 71  HNKTLAAQLTSEFREFFPENCVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D IVV+SVSCIYG+G+ E Y ++ V L+ G   ++ E++  LV  QY+R 
Sbjct: 131 SATSALLERKDVIVVASVSCIYGLGNPEEYKKLTVSLREGMEKDRDEIIRQLVDIQYERN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I  +RGTFR  GD ++IFP+   ++  RV  FG++I++I EF  LTG  +   +   I+
Sbjct: 191 EINFVRGTFRARGDVLDIFPASSTNIGIRVEFFGDEIDKIREFDVLTGNILNTRKHASIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T +  L  A+K I+EEL+ R+ EL  + +LLE QR++QR  +D+EM+   G C 
Sbjct: 251 PASHFATSKEKLEIAIKKIEEELEERVKELIAQDKLLEVQRVKQRTNFDIEMMREVGYCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GRNPG PP TL +Y P+D LLF+DESHVT+PQI  MY GD  RK  L EY
Sbjct: 311 GIENYSRVLDGRNPGTPPKTLMDYFPDDFLLFIDESHVTLPQIKAMYGGDRSRKDNLVEY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+F+E+      T+ VSATP  +E E     I EQIIRPTGL+DP + 
Sbjct: 371 GFRLPCAYDNRPLKFQEFEGKLNQTVFVSATPSQYEFEHSTN-IAEQIIRPTGLLDPEII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+Y  IN    +G R+L+T LTK+M+EDLT+YL E  ++  Y+HS + T++
Sbjct: 430 VKPIKGQIDDLYSNINETINRGFRVLVTTLTKKMSEDLTDYLKEMGVKTEYLHSSIDTIK 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR GKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+T+LIQTIGRAAR
Sbjct: 490 RMEIIRDLRKGKFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETALIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+YADTITK++  AI ET RRRE Q+++N++H I P +V + I +VI   + ED
Sbjct: 550 NSESKVIMYADTITKAMDKAISETNRRREIQMQYNEEHGIVPTTVLKDIRDVIQTKVSED 609

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                ++    + ++SK++ +  +    K+M   A  L FE+AA IRDEI++LK
Sbjct: 610 KEEYIVN---NKNTMSKEEIEKLINKYEKEMKKVAKELQFEKAAEIRDEIQKLK 660


>gi|225870778|ref|YP_002746725.1| UvrABC system protein B (UvrB protein) [Streptococcus equi subsp.
           equi 4047]
 gi|254764909|sp|C0MBD7|UVRB_STRE4 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|225700182|emb|CAW94344.1| UvrABC system protein B (UvrB protein) [Streptococcus equi subsp.
           equi 4047]
          Length = 663

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/660 (53%), Positives = 476/660 (72%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +D   F++ + Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P
Sbjct: 5   RDFKAFKLVSKYAPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVVAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL++LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNALVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ + + +
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKVLGDAD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML  
Sbjct: 245 HLVLFPATHFVTNDEHMEQSISKIQAELADQLKLFEAEGKLLEAQRLRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRSAGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDKARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ    IVEQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTD-TIVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R +  Q++D+  EINL  ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRVERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN +  VI+YAD +T S+Q AIDET RRR  Q+ +N++H I PQ++K+ I ++I  
Sbjct: 544 GRAARNADGHVIMYADRMTDSMQRAIDETARRRAIQMAYNEEHGIIPQTIKKDIRDLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               +A  T    + + ++ S++  +  +K L+K M  AA+ L+FE AA++RD I  LK+
Sbjct: 604 SRAVEAKATEAETNYESMTRSER--QEAIKQLQKNMQEAAELLDFELAAQLRDLILELKA 661


>gi|312198693|ref|YP_004018754.1| excinuclease ABC, B subunit [Frankia sp. EuI1c]
 gi|311230029|gb|ADP82884.1| excinuclease ABC, B subunit [Frankia sp. EuI1c]
          Length = 700

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/689 (52%), Positives = 486/689 (70%), Gaps = 29/689 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N+ +  T F++ +DY PSGDQPAAI +L + I + EK  +LLG TG+GK+ T A +IE +
Sbjct: 2   NNERSATPFKVVSDYQPSGDQPAAIKELARRIRAGEKDLVLLGATGTGKSATTAWLIEEL 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +VMAPNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN
Sbjct: 62  QRPTLVMAPNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSIN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           E+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +V++ +G+ +++  LL  L
Sbjct: 122 EEVERLRHSATMSLLTRRDVIVVASVSCIYGLGTPQEYIDRMVKISVGEEIDRDLLLRRL 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QY R D+   RGTFRV GD++E+FP + E++A R+ +FG++IE IS  +PLTG+ +R
Sbjct: 182 VDVQYTRNDLAFDRGTFRVRGDTVEVFPVY-EELAVRIELFGDEIERISYLHPLTGEIVR 240

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V+ + I+  SHYV     +  A+  I+EEL  RL +LE +G+LLEAQRL  R TYD+EM
Sbjct: 241 EVDQVFIFPASHYVAGPERMERAITGIEEELATRLEQLEGQGKLLEAQRLRMRTTYDIEM 300

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           +   G C  IENYSR++ GR  G  P TL +Y P+D L+ +DESH T+PQI GMY GD  
Sbjct: 301 MRQVGFCSGIENYSRHIDGRAAGTAPHTLLDYFPDDFLMVIDESHNTVPQIGGMYEGDMS 360

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L ++GFRLPS  DNRPLR+EE+      T+ +SATPG +EL +  G IVEQIIRPT
Sbjct: 361 RKRNLVDHGFRLPSATDNRPLRWEEFLERVGQTVYLSATPGPYELGKADG-IVEQIIRPT 419

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP + ++  + Q++D+  EI L A++  R+L+T LTK+M+EDLT+YL E  IRVRY+
Sbjct: 420 GLIDPEIVLKPTKGQIDDLIHEIRLRAERDERVLVTTLTKKMSEDLTDYLLELGIRVRYL 479

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSEV TL R+E++ +LR G +DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS+ SLI
Sbjct: 480 HSEVDTLRRVELLTELRRGDYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSERSLI 539

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV  +V +YAD IT S++ AIDET RRR  Q+ +N+KH ++PQ +++K+M++
Sbjct: 540 QTIGRAARNVAGQVHMYADKITPSMRTAIDETNRRRALQVAYNEKHGLDPQPLRKKVMDI 599

Query: 733 IDPILLEDA--------------------------ATTNISIDAQQLSLSKKKGKAHL-K 765
           +D ++ E+A                              +   A +L+   +   A+L +
Sbjct: 600 LDDMVRENADGEMYGGGRAQSRGKAPVPGMKSRGGKQDAVGRYAAELAGMPRHDLANLIR 659

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            L  QMH AA  L FE AAR+RDEI  LK
Sbjct: 660 QLDDQMHEAAKELQFELAARLRDEIAELK 688


>gi|320538870|ref|ZP_08038546.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Serratia symbiotica str. Tucson]
 gi|320031030|gb|EFW13033.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Serratia symbiotica str. Tucson]
          Length = 671

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/662 (55%), Positives = 466/662 (70%), Gaps = 10/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++  D+ P+GDQP AI +L  G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHADFKPAGDQPEAIRKLEAGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKGFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLNQGMIIDQRAILRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+   D+A RV +F +++E +S F PLTGQ  + V    IY
Sbjct: 185 DQAFQRATFRVRGEVIDIFPAESGDLALRVELFDDEVERLSLFDPLTGQIEQVVPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  +  AMK IK EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKSHYVTPRTRILQAMKEIKAELAERRQVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR+ G PPPTLF+Y+P D LL VDESHVTIPQI GM++GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRSAGAPPPTLFDYLPTDGLLVVDESHVTIPQIGGMFKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P T+ VSATPG +ELE+  G +++Q++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTLYVSATPGKYELEKSGGDLIDQVVRPTGLLDPEVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI        R+L+T LTKRMAEDLT+YL E   RVRY+HS++ T+E
Sbjct: 425 VRPVTTQVDDLLSEIRKRVALNERVLVTTLTKRMAEDLTDYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S+  AI ET RRR KQ  +N ++ I PQ + +KI +++   L + 
Sbjct: 545 NLNGKAILYGDRITDSMAKAIGETERRRIKQQAYNAENGIVPQGLNKKISDILQ--LGQH 602

Query: 741 AATTNISID--------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
               +   D        AQ  SL+    +  ++ L  QM+  A NL FE+A  +RDEI  
Sbjct: 603 PGKRHKGKDKSQASENAAQYQSLTPAALEHKIRELEAQMYSHAQNLEFEQAGALRDEIHH 662

Query: 793 LK 794
           L+
Sbjct: 663 LR 664


>gi|290580728|ref|YP_003485120.1| excinuclease ABC subunit B [Streptococcus mutans NN2025]
 gi|254997627|dbj|BAH88228.1| excinuclease ABC subunit B [Streptococcus mutans NN2025]
          Length = 663

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/660 (53%), Positives = 477/660 (72%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           KD   F + + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI+ + +P
Sbjct: 5   KDNNQFHLVSKYEPSGDQPEAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+    + + +LL+ LV  
Sbjct: 125 DKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPSQEISRDQLLNDLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGRVLGEVD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I+  +H++T    +  A+  I++E++ ++   E EG+L+EAQR+ QR  YD+EML  
Sbjct: 245 HLAIFPATHFMTNDEHMEVAIAKIQKEMEEQVRLFEAEGKLIEAQRIRQRTEYDVEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTSGVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKE 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L  YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ   +I EQIIRPTGL+
Sbjct: 365 MLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTDTVI-EQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R    Q++D+  EIN  A +G RI +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPTMGQMDDLLGEINSRADKGERIFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN    VI+YADT+T+S++ AIDET RRR+ Q+ +N++H I PQ++K+ I ++I  
Sbjct: 544 GRAARNSQGHVIMYADTVTQSMRRAIDETHRRRQIQMAYNEEHGIIPQTIKKDIRDLIAI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               D+     ++D    +++K + +  +K L+KQM  AA+ L+FE AA+IRD +  LK+
Sbjct: 604 TKANDSEVAEEAVDYN--AMTKSERQEAIKKLQKQMQEAAELLDFELAAQIRDMVLELKA 661


>gi|309390141|gb|ADO78021.1| Excinuclease ABC subunit B [Halanaerobium praevalens DSM 2228]
          Length = 673

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/667 (53%), Positives = 477/667 (71%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P GDQP AI +L +GI +  + Q LLG TG+GKTFTMAK++E + +P +V+A
Sbjct: 6   FKLKAPFEPKGDQPEAIEKLAQGIKNGYQHQTLLGATGTGKTFTMAKLVEEVNKPTLVIA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK++S+N++I+++R 
Sbjct: 66  HNKTLAAQLTSEFKEFFPDNAVEYFVSYYDYYQPEAYVPQTDTYIEKDASVNDEIEKLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D ++V+SVSCIYG+GS + Y  + + LK+G  +++K++  SL   QY R 
Sbjct: 126 SATTSLFERRDVLIVASVSCIYGLGSPDDYLNLSLDLKVGKIMDRKKITRSLTFMQYSRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD ++IFP++  D+A RV +FG++I+ I+    +TG+    +E + IY
Sbjct: 186 DMDTSRGHFRVKGDVVDIFPAY-RDIAIRVELFGDEIDRITRINTVTGEVQAEIEEMTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VTP   +  A+K I  EL+  L +L  E RL+EAQRLEQR  YDLEMLE  G C 
Sbjct: 245 PASHFVTPEDKVERAIKTITAELEEHLKDLRAENRLVEAQRLEQRTRYDLEMLEQMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L GR  G  P  L +Y P+D ++ +DESH+TIPQI GM+ GD  RK  L EY
Sbjct: 305 GIENYARHLAGRETGSRPMALLDYFPDDFMVIIDESHMTIPQIGGMFAGDRSRKEKLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+  + P  + VSATPG +E +  Q I VEQIIRPTGLVDP ++
Sbjct: 365 GFRLPSALDNRPLNFEEFEQVVPQAVYVSATPGPYERKHSQQI-VEQIIRPTGLVDPEID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  ++Q++D+ +EI        R+L+T LTK+M+EDLTEYL E  I+VRY+HS++ T+E
Sbjct: 424 IRPTKSQIDDLLEEIRQVVASKERVLVTTLTKKMSEDLTEYLAEAGIKVRYLHSDIDTIE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLGKFDVLVGINLLREGLD+PE   VAILDADKEGFLRS+ +LIQTIGRAAR
Sbjct: 484 RSEIIRDLRLGKFDVLVGINLLREGLDLPEVSRVAILDADKEGFLRSQRALIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           NV  KVI+YAD IT S+Q AI ET RRR+ Q++HN  +NI P+++ + + +V+ P+ +  
Sbjct: 544 NVEGKVIMYADKITDSMQTAISETERRRKIQIQHNLDNNITPETIIKPVRDVVKPVDMVV 603

Query: 739 -------EDAATTNISID--AQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRD 788
                   D + +N   D  +Q      +K   HL   L ++M  AADNL FE AA+IRD
Sbjct: 604 SEDQSRYYDKSQSNTDPDDHSQNYDQMNRKEIQHLILDLEEEMETAADNLEFEIAAQIRD 663

Query: 789 EIKRLKS 795
           EI+ L++
Sbjct: 664 EIEELEA 670


>gi|303231825|ref|ZP_07318539.1| excinuclease ABC, B subunit [Veillonella atypica ACS-049-V-Sch6]
 gi|302513503|gb|EFL55531.1| excinuclease ABC, B subunit [Veillonella atypica ACS-049-V-Sch6]
          Length = 726

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/681 (52%), Positives = 484/681 (71%), Gaps = 28/681 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P+GDQP AI  L  GI   E  Q+LLG TG+GKTFTMAKVIEA+Q+P +++A
Sbjct: 14  FKVEAPFTPTGDQPTAIQSLTDGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKPTLIIA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++ID++RH
Sbjct: 74  HNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEIDKLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G  E YS +++ L++G +  + E+LS LV  QY R 
Sbjct: 134 SATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQTKSRDEILSKLVDIQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  IRGTFRV GD+IEIFP+   + A RV +FG++I+ + E   LTG+ I   + + +Y
Sbjct: 194 DMNFIRGTFRVQGDTIEIFPAAYSERAIRVELFGDEIDRLVEVDALTGEVIAERKHVAVY 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +  +  A++ I+ EL  +L +L+ E RLLEAQRLEQR  YD+EM++  G C 
Sbjct: 254 PASHYVTTKEKMKIAVERIEAELDEQLAKLKAEDRLLEAQRLEQRTRYDIEMMQEMGYCS 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++ R  GE P TL +Y P+D L+ VDESHVTIPQ+  MY GD  RK +L EY
Sbjct: 314 GIENYSRHMSERKAGEAPYTLIDYFPDDFLIMVDESHVTIPQVRAMYNGDRARKESLIEY 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       + VSATPG +E+E  +  + EQIIRPTGL+DP +E
Sbjct: 374 GFRLPSALDNRPLKFDEFVERINQIVYVSATPGPYEME-VETNVAEQIIRPTGLLDPSIE 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EI+  A +  R+L+T LTK+MAEDLTE+L E  +RVRY+HS++ T+E
Sbjct: 433 IRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSDIVTIE 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T++IQTIGRAAR
Sbjct: 493 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN  VI+YAD +T S+Q A+DET RRR  Q  +N +H+I P+SV + + E+I+   +E+
Sbjct: 553 NVNGHVIMYADRVTGSMQRAMDETDRRRAVQEAYNIEHHITPKSVSKDVKELIELTKVEE 612

Query: 741 AATTNI--------------------------SIDAQQLS-LSKKKGKAHLKSLRKQMHL 773
              T+                             DA +++ ++ ++    ++ L +QM  
Sbjct: 613 DMVTDGKGLSPKKGKKKSSAAGMDHGHEPYAQDADATKVAEITAEELYNKIEELDRQMKA 672

Query: 774 AADNLNFEEAARIRDEIKRLK 794
           AA  L FE+AA++RD++  L+
Sbjct: 673 AAKQLEFEKAAKLRDQLGELR 693


>gi|254820352|ref|ZP_05225353.1| excinuclease ABC subunit B [Mycobacterium intracellulare ATCC
           13950]
          Length = 725

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/692 (52%), Positives = 478/692 (69%), Gaps = 32/692 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I + E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 32  FEVVSPHDPAGDQPAAIDELERRIRAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 91

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 92  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 151

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ +SY    V+L++G+ V +  LL  LV  QY R 
Sbjct: 152 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVELRVGNEVPRDGLLRLLVDVQYTRN 211

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG  IR V++++I+
Sbjct: 212 DLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGDVIRQVDSLRIF 270

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 271 PATHYVAGPERMAHAISTIEEELAARLAELEGQGKLLEAQRLRMRTNYDIEMMRQVGFCS 330

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++  R PG PP TL +Y PED L+ +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 331 GIENYSRHIDARGPGSPPATLLDYFPEDFLMVIDESHVTVPQIGGMYEGDMSRKRNLVEY 390

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 391 GFRLPSACDNRPLTWEEFADRVGQTVYLSATPGPYELSQSGGEFVEQVIRPTGLVDPKVV 450

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI        R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 451 VKPTKGQIDDLIGEIRKRTDADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 510

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 511 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 570

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739
           NV+ +V +YADTIT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D +  E 
Sbjct: 571 NVSGEVHMYADTITDSMKEAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 630

Query: 740 ---DAATTNISIDAQQLSLSKKK----GKA---------------------HLKSLRKQM 771
              +A+   I    +  S  ++     G+A                      +K L  QM
Sbjct: 631 SDTEASVVEIGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTTSMPRAELADLIKDLTAQM 690

Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
             AA +L FE AAR RDEI  LK     +G+D
Sbjct: 691 MAAARDLQFELAARFRDEIADLKKE--LRGMD 720


>gi|302868823|ref|YP_003837460.1| excinuclease ABC subunit B [Micromonospora aurantiaca ATCC 27029]
 gi|315504707|ref|YP_004083594.1| excinuclease abc, b subunit [Micromonospora sp. L5]
 gi|302571682|gb|ADL47884.1| excinuclease ABC, B subunit [Micromonospora aurantiaca ATCC 27029]
 gi|315411326|gb|ADU09443.1| excinuclease ABC, B subunit [Micromonospora sp. L5]
          Length = 701

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/688 (52%), Positives = 480/688 (69%), Gaps = 28/688 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +++ P+GDQPAAI +L + +   ++  +LLG TG+GK+ T A ++E +QRP +V+A
Sbjct: 12  FQVVSEFQPAGDQPAAIDELERRVRRGDRNTVLLGATGTGKSATTAWLVERLQRPTLVLA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL  EF    PHNAVEYFVSYYDYYQPEAY+P+TDTYIEK+SSINE+++R+RH
Sbjct: 72  PNKTLAAQLAKEFGELMPHNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSINEEVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D IVV++VS IYG+G+ E Y    V++K+G  +++ +LL  LV  QY R 
Sbjct: 132 SATMSLLTRRDVIVVATVSAIYGLGTPEEYLDRAVRVKVGQELDRDQLLRRLVDIQYARN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P++ E++A R+ +FG++IE++    PLTG  +R V+++ I+
Sbjct: 192 DMAFQRGTFRVRGDTLEIIPAY-EELAVRIELFGDEIEKLYYLNPLTGDVVREVDSLMIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY      +  A++ I+ EL  RL ELE++G+LLEAQRL  R TYD+EM+   G C 
Sbjct: 251 PATHYAAGPERMERAIRDIEAELGERLAELERQGKLLEAQRLRMRTTYDIEMMRQVGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR PG PP  L +Y P+D L  VDESHVTIPQI GMY GD  RK  L ++
Sbjct: 311 GIENYSMHIDGRLPGSPPHCLLDYFPDDFLTVVDESHVTIPQIGGMYEGDASRKRMLIDH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRF+E+       + +SATPG WELEQ QG  VEQ+IRPTGL+DP V 
Sbjct: 371 GFRLPSAADNRPLRFDEFLERVGQMVFLSATPGPWELEQAQGEFVEQVIRPTGLIDPEVV 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI L  ++  R+L+T LTK+MAEDL++YL E  IRVRY+HSEV TL 
Sbjct: 431 VKPTKGQIDDLMHEIKLRTERDERVLVTTLTKKMAEDLSDYLLENGIRVRYLHSEVDTLR 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 491 RVELLRELRKGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGRSLIQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738
           NV+ +V +YAD IT S+  AIDET RRR KQ+ HN+ + I P+ +++KI +++D I    
Sbjct: 551 NVSGQVHMYADKITPSMADAIDETNRRRAKQIAHNEANGIKPEPLRKKIHDILDDIYREA 610

Query: 739 EDAATTNISIDAQQLSLSK--------KKGKAH---------------LKSLRKQMHLAA 775
           ED   +N+    +QLS  K        ++G A                ++ L  QM  AA
Sbjct: 611 EDTENSNVGGAVRQLSRGKAPVKETRSRRGAAATPSREGMARADLANLIQELNDQMLAAA 670

Query: 776 DNLNFEEAARIRDEIKRLKSSPYFQGLD 803
             L FE AARIRDE+  LK     +G+D
Sbjct: 671 RELQFELAARIRDEVADLKKE--LRGMD 696


>gi|300214835|gb|ADJ79251.1| UvrABC system protein B [Lactobacillus salivarius CECT 5713]
          Length = 666

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 475/655 (72%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L +GI   EK Q+L+G TG+GKTFT++ VI+ + +P +V+A
Sbjct: 10  FELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKNVNKPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y +  + L++G  +E+ +LL+ L+  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPHEYREHTISLRVGQEIERNKLLNDLIDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E  PLTG+ I + E I I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDESALRVEFFGDEIDRIREIDPLTGETIADREHIAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L TA++ I++EL+ R  EL+ EG+LLEAQRL+QR TYD+EML+  G C 
Sbjct: 250 PATHFMTNEERLGTAIEGIQQELEERTTELKNEGKLLEAQRLQQRTTYDIEMLKEMGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P TL ++ P+D L+ VDESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRKPGEAPYTLLDFFPDDFLIVVDESHVTMPQVRGMYNGDRARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL  EE+       I +SATPG +E E+    +V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLTREEFEKHVNQIIYMSATPGPYEQEKTSH-VVQQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   +   R+ +T LTK+MAEDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 429 VRPIMGQMDDLVGEINKRVELNERVFVTTLTKKMAEDLTDYFKEMGIKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RDLR+GKFDVLVGINLLREG+D+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTEIVRDLRMGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD +T S++ AI ET RRR  Q ++NK HNI P+++ + I   I      +
Sbjct: 549 NASGHVIMYADDVTPSMEAAIKETKRRRSIQEQYNKDHNIIPKTIIKPIRAAISISSKVN 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            + TNIS       +SKK+    + +L +QM  AA  L+FEEAA +RD +  LK+
Sbjct: 609 KSDTNISDTVDFADMSKKEQLEMISNLEEQMREAAKKLDFEEAATLRDTVMELKA 663


>gi|227541521|ref|ZP_03971570.1| excision endonuclease subunit B [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227182677|gb|EEI63649.1| excision endonuclease subunit B [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 680

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/661 (53%), Positives = 487/661 (73%), Gaps = 9/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L + I   EK  +L+G TG+GK+ T A +IE +QRP +VMA
Sbjct: 11  FEVISEYEPAGDQPKAIKELTERIQRGEKDIVLMGATGTGKSATAAWLIEQVQRPTLVMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH
Sbjct: 71  PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VVSSVSCIYG+G+ +SY    +++++G+ +++   L  LV  QY+R 
Sbjct: 131 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSLKIEVGEEIDRDRFLRLLVDIQYERN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RG FRV GD+++I P++ E+VA RV  FG++++++   +PLTG+ IRNV+ ++I+
Sbjct: 191 DYDLKRGAFRVKGDTVDIIPAY-EEVAVRVEFFGDEVDQLYYIHPLTGEIIRNVDVLRIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY+     +  A++ I+EEL+ R+   E  G+LLEAQRL  R  YDLEM+E  G C 
Sbjct: 250 PATHYIASEGRVEKAIEQIREELEERITSFENRGKLLEAQRLRMRTEYDLEMIEEMGFCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G+PPPTL +Y PED L  +DESHVT+PQI GMY GD  RK  L E+
Sbjct: 310 GIENYSRHMDGREAGDPPPTLIDYFPEDFLTIIDESHVTVPQIGGMYEGDASRKRNLVEF 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE+   +  T+ +SATPG +EL    G  VEQ+IRPTGLVDP + 
Sbjct: 370 GFRLPSALDNRPLTWEEFEERKGQTVYMSATPGDYELAAAGGEFVEQVIRPTGLVDPKIV 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI + A++  R+L+T LTK+MAEDLTEYL E  +RVRYMHS+V TL+
Sbjct: 430 VKPTKGQIDDLIHEIRVRAEKKERVLVTTLTKKMAEDLTEYLQENGVRVRYMHSDVDTLQ 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVELLRKLRLGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTKSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD+IT S+Q AIDET RRRE Q+ +NK+H I+PQ +++KI +++D ++ ED
Sbjct: 550 NVSGEVHMYADSITDSMQQAIDETERRREMQIAYNKEHGIDPQPLRKKIADILD-LVYED 608

Query: 741 A-------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           A       A   ++ D    ++++ + +  +K LR QM  AA  LNFE AAR+RDEI  L
Sbjct: 609 AEEGETPSADAVVAKDYDVSTMAQDEVEKLIKDLRAQMGAAARELNFELAARLRDEIVSL 668

Query: 794 K 794
           +
Sbjct: 669 E 669


>gi|210635514|ref|ZP_03298595.1| hypothetical protein COLSTE_02534 [Collinsella stercoris DSM 13279]
 gi|210158369|gb|EEA89340.1| hypothetical protein COLSTE_02534 [Collinsella stercoris DSM 13279]
          Length = 746

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/688 (52%), Positives = 480/688 (69%), Gaps = 36/688 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AIA L+KG+   ++ Q+LLGVTGSGKTFTMAK IEA+ +P +VMA
Sbjct: 25  FEVVSPFQPSGDQPEAIASLVKGVEDGDRYQVLLGVTGSGKTFTMAKTIEALGKPTLVMA 84

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL SE K FFPHNAV YFVSYYDYYQPEAYVP +DTYIEK+SSINE+++ +RH
Sbjct: 85  PNKTLAAQLASELKEFFPHNAVVYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEVEMLRH 144

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT SLL R D IVV+SVSCIYGIGS E Y+ +   +     +E+ E + +L+  QY R 
Sbjct: 145 QATASLLSRRDVIVVASVSCIYGIGSPEDYAGLAPNVDKKVPLERDEFIHALIDIQYDRN 204

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGTFRV GD ++++P + E    R   FG+++E I+E   +TG+ +R  + I ++
Sbjct: 205 DYDLARGTFRVRGDVVDVYPPYAEH-PLRFEFFGDEVELIAEIDEVTGEILREYDAIPVW 263

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +P +  A+K I+EEL++R+ EL+   +LLEAQRLEQR +YDLEMLET G   
Sbjct: 264 PASHYVTEKPKVTAALKSIEEELEVRVGELKANDKLLEAQRLEQRTSYDLEMLETMGFTT 323

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR PGEPP TL +Y P+D L  +DESHVT+PQI GM+ GD  RK TL E+
Sbjct: 324 GIENYSRHLDGRKPGEPPFTLIDYFPKDMLCIIDESHVTVPQIRGMHEGDRSRKVTLVEH 383

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+    P  I VSATPG +EL   Q   VEQIIRPTGL+DP ++
Sbjct: 384 GFRLPSALDNRPLRFDEFEARIPQFIYVSATPGDYELRVSQN-NVEQIIRPTGLLDPKID 442

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ DEIN    +  R+L+T LTKRMAEDLT++L +  IRV YMHS+  T++
Sbjct: 443 VRPVHGQIDDLIDEINARVAKHERVLVTTLTKRMAEDLTDHLLDAGIRVNYMHSDTATMD 502

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+R LR GK DVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 503 RVEILRSLRQGKIDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNRRSLIQTIGRAAR 562

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YADT+T S++ AIDET RRR  Q++ N++H I P++V++ I + I   + E 
Sbjct: 563 NAEGEVIMYADTVTDSMREAIDETNRRRAIQMQFNEEHGIKPKTVRKAISD-ISSFIAEA 621

Query: 741 AATTN-----------------------------ISID---AQQLS-LSKKKGKAHLKSL 767
             T                               +S+    A++LS L +++    + ++
Sbjct: 622 EETVGKKDRSRGDTLGHGAFFSPAADGDAGDGGAVSMGERLAEELSELPQEELARVIATM 681

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKS 795
              M  A++ ++FEEAAR+RD +  LK+
Sbjct: 682 EDDMRAASEAMDFEEAARLRDAVVSLKA 709


>gi|152977385|ref|YP_001376902.1| excinuclease ABC subunit B [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152026137|gb|ABS23907.1| excinuclease ABC, B subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 658

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/655 (55%), Positives = 481/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI QL+KGI + ++ Q+LLG TG+GKTFT++ VI+ +++P +VMA
Sbjct: 5   FEIVSEYSPQGDQPKAIEQLVKGIQNGKRHQVLLGATGTGKTFTISNVIKEVKKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   E + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVDALTGEVLAEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL ++G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNEQGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHVT+PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDYFPKDFLIVMDESHVTVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       I VSATPG +ELE     +VEQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEEKANQIIYVSATPGPYELEHAPE-VVEQIIRPTGLLDPKIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLLGEIQERIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YAD ITKS+Q+AIDET RRREKQ  +NK+H I P+++++++ +VI   +   
Sbjct: 544 NENGHVIMYADHITKSMQIAIDETKRRREKQEAYNKEHGITPKTIQKEVRDVIRATVA-- 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A  T +        ++KK+ +  +  +  +M  AA  L+FE AA +RD I  LK+
Sbjct: 602 AEETEVYEATAMKKMTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLILELKA 656


>gi|284047894|ref|YP_003398233.1| excinuclease ABC, B subunit [Acidaminococcus fermentans DSM 20731]
 gi|283952115|gb|ADB46918.1| excinuclease ABC, B subunit [Acidaminococcus fermentans DSM 20731]
          Length = 664

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/656 (54%), Positives = 469/656 (71%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AI  L +G+      Q+LLG TG+GKT+T+A+VI+ +Q+P +V+A
Sbjct: 3   FEIHAPFAPAGDQPEAIDALARGVEEGMHTQVLLGATGTGKTYTIAQVIQKVQKPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+SS+N++ID++RH
Sbjct: 63  HNKTLAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYIPATDTYIEKDSSMNDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L+ER D IVV+SVSCIYG+G  + Y   ++ L+IG +VE+  +L  LVK +Y R 
Sbjct: 123 SATSALMERRDVIVVASVSCIYGLGGPKDYYDSVLSLRIGQTVERDAILEKLVKIRYDRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD IE+ P+   + A R+ +FG++++ + E   LTGQ +     + I+
Sbjct: 183 DLSLERGKFRVRGDVIEVVPASYGEKAIRIELFGDEVDSLEEIDVLTGQVVDKRTHVAIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    L  A K I+ EL  RL  L+ E +LLEAQRLEQR  YDLEM++  G C 
Sbjct: 243 PASHYVTSDENLERARKDIRRELNERLKVLKGENKLLEAQRLEQRTNYDLEMMQELGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGEPP TL  Y P+D L  +DESHVT+PQ+  MY GD  RK  L +Y
Sbjct: 303 GIENYSRHLTGRKPGEPPFTLVNYFPKDFLTVIDESHVTLPQLRAMYAGDRARKEQLVKY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+   R   I VSATPGS+E+E     +VEQIIRPTGL+DP +E
Sbjct: 363 GFRLPSAIDNRPLTFDEFQAQRGQIIYVSATPGSYEMETTDQ-VVEQIIRPTGLLDPKIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI+    Q  R+L+T LTK+MAEDLTEYL    +RVRY+HS++ T+E
Sbjct: 422 VRPIKGQIDDLLGEIHKVTAQKERVLVTTLTKKMAEDLTEYLTTAGVRVRYLHSDIATIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EII DLR GKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T++IQTIGRAAR
Sbjct: 482 RAEIIHDLRAGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YADTIT S++ AI ET RRREKQ   NK H I P+++++K++++I    +E+
Sbjct: 542 NAHGRVIMYADTITGSMERAISETARRREKQEAFNKVHGIVPRTIQKKVVDLIKLTKVEE 601

Query: 741 AATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T      A+ +  L  ++    ++ + K+M  AA  L+FE AA  RD++  LK 
Sbjct: 602 DNTAAKGYTAKTVKKLKPRELDKQIRLMEKKMKEAAKQLDFELAAEYRDQLILLKG 657


>gi|51246617|ref|YP_066501.1| excinuclease ABC subunit B [Desulfotalea psychrophila LSv54]
 gi|50877654|emb|CAG37494.1| probable excinuclease ABC, subunit B [Desulfotalea psychrophila
           LSv54]
          Length = 706

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/683 (53%), Positives = 478/683 (69%), Gaps = 20/683 (2%)

Query: 127 RSWSINNHSKDI---TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183
           R W + N    I   T FQ+ + Y PSGDQP AI +L+ G+   +  Q+LLGVTGSGKTF
Sbjct: 22  RRWIVLNSIFGIFMDTPFQLVSPYTPSGDQPKAIEELVAGVRRGDCDQVLLGVTGSGKTF 81

Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243
           T+A V+  +QRPA+V+APNK LA QL++EFK  FPHNAVEYFVSYYDYYQPEAY+P +D+
Sbjct: 82  TLANVVAELQRPALVIAPNKTLAGQLFAEFKELFPHNAVEYFVSYYDYYQPEAYIPASDS 141

Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303
           YIEK+SSIN+ ID+MRHSATRSLL R D ++V+SVSCIYG+GS + Y  M + L+     
Sbjct: 142 YIEKDSSINDAIDKMRHSATRSLLTRRDVLIVASVSCIYGLGSPDEYKNMHLLLERDKDY 201

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
             +++   LV  QY+R D    RGTFRV GD ++IFP H E+ A R+  FG+ +E+IS  
Sbjct: 202 AMEKIQRRLVFMQYERNDTSFHRGTFRVRGDVVDIFPVHEEERAIRLEFFGDTLEKISLI 261

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
            PL G+ +  +    I+  SH+VT +  L  A + IK+ELK RL   ++E RL+EAQR+E
Sbjct: 262 DPLRGKTLEELAEYTIFPGSHFVTSKDRLQVATEEIKKELKERLDYFQREHRLVEAQRIE 321

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
           QR  +DLEM+   G C  IENYSR+LTG+  G PPP L +Y P+D LL +DESH+ I Q+
Sbjct: 322 QRTMFDLEMMTELGYCTGIENYSRHLTGKEAGAPPPNLLDYFPDDFLLLIDESHIGIGQL 381

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
           +GMY GD  RK TL +YGFRLPS +DNRPLRF+E+       I VSATPG +ELEQ  G+
Sbjct: 382 NGMYNGDRSRKETLVKYGFRLPSALDNRPLRFQEFTERIHQAIYVSATPGPYELEQSHGV 441

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
           +VEQ+IRPTGL+DP +E+R A +QV+D+ +EI L  ++   +L+T LTKRMAEDLTEY  
Sbjct: 442 VVEQVIRPTGLLDPKIEVRPASSQVDDLLEEIRLRTERDEAVLVTTLTKRMAEDLTEYYE 501

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +  I+VRY+HS+VKTL+R+E+I+ LR G+++VLVGINLLREGLDIPE  LVAILDADKEG
Sbjct: 502 QLGIKVRYLHSDVKTLQRMELIQSLRKGEYNVLVGINLLREGLDIPEVSLVAILDADKEG 561

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           FLRS+ SL+QT GRAARNVN  VI+YAD IT S+   I ET RRR+ Q  +N++H I PQ
Sbjct: 562 FLRSERSLVQTCGRAARNVNGTVIMYADRITGSMAYTIAETERRRKIQEAYNREHGIVPQ 621

Query: 724 SVKEKIMEVIDPILLE--------DAATTNISID----AQQLSLSKKKGKAHLKSLRKQM 771
           ++   + + +   L +        D  T  ++ D    A    L K+ GK     L K+M
Sbjct: 622 TIISPVKDTLQRHLRQTGYQADNYDGKTAKMAEDLPVYASMQELEKEIGK-----LEKEM 676

Query: 772 HLAADNLNFEEAARIRDEIKRLK 794
             AA +L FEEAA +RD+IK L+
Sbjct: 677 QQAAADLAFEEAAALRDQIKALR 699


>gi|217967273|ref|YP_002352779.1| excinuclease ABC, B subunit [Dictyoglomus turgidum DSM 6724]
 gi|217336372|gb|ACK42165.1| excinuclease ABC, B subunit [Dictyoglomus turgidum DSM 6724]
          Length = 662

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/655 (54%), Positives = 469/655 (71%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +++ P GDQP AI +L +G+    + Q L+GVTGSGKTFTMA +I  +Q+P +V+A
Sbjct: 4   FILVSEFKPCGDQPQAIEKLTEGVKRGLRYQTLIGVTGSGKTFTMANIIANVQKPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P+TDTYIEK++ IN++IDR+RH
Sbjct: 64  PNKTLAAQLYSEFKEFFPYNAVEYFVSYYDYYQPEAYIPQTDTYIEKDADINDRIDRLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T SLL R D IVV+SVSCIYG+GS   Y++MI+++K G+ + ++ LL  L+K QY+R 
Sbjct: 124 STTSSLLSRRDVIVVASVSCIYGLGSPMDYAEMILRVKRGEDLPRETLLRKLIKLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD +E+FP   E  A RV  +G++IE ISE  PL G++I +   + IY
Sbjct: 184 DYEFTRGKFRVRGDIVEVFPIGGE-TAIRVEYWGDNIERISEIDPLNGKRIIDFNEVFIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY+ P   +  A++ IK EL  RL EL  +G+ LEA+RLE R  YD+E+L   G C+
Sbjct: 243 PATHYIAPTEKMERAIESIKRELTERLEELRAQGKFLEAKRLEARTLYDIELLREVGYCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GR PGEPP TL +Y P+D L+F+DESH+TIPQ+  MY GD  RK  L EY
Sbjct: 303 GIENYSRHFDGRKPGEPPYTLLDYFPDDFLVFIDESHLTIPQLRAMYHGDKSRKDNLVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+    P  I VSATP  +EL   +  +VEQ+IRPTGL+DP +E
Sbjct: 363 GFRLPSAYDNRPLTFEEFWERVPQVIFVSATPAEFELSVSEQ-VVEQLIRPTGLLDPEIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +     Q++ +  EI     +G R+L+T LTKR AEDL EYL    I V Y+HSE++TLE
Sbjct: 422 VHPTEGQIDHLISEIKKVVARGERVLVTTLTKRTAEDLAEYLSNLGINVTYLHSEIETLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  I+++LRLGKFDVLVGINLLREGLD+PE  LVAILDAD+EGFLRS+ SLIQ +GRAAR
Sbjct: 482 RTGILQNLRLGKFDVLVGINLLREGLDLPEVSLVAILDADREGFLRSERSLIQVMGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN KVI+YAD IT+S++ AI ET RRR+ Q+E+NK H I P+S+K+ + EV D   +E 
Sbjct: 542 NVNGKVIMYADVITESMRKAIQETERRRKIQMEYNKAHGIIPKSIKKPVKEVFD--FVEA 599

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            A       A    LS  + +  ++ L K+M+ AA  L+FE+AA +RD+IK LK+
Sbjct: 600 VAEKKADYRAISKKLSIDEIEEVIRQLEKEMYEAAAELDFEKAAYLRDQIKELKN 654


>gi|227891173|ref|ZP_04008978.1| excinuclease ABC subunit B [Lactobacillus salivarius ATCC 11741]
 gi|227867047|gb|EEJ74468.1| excinuclease ABC subunit B [Lactobacillus salivarius ATCC 11741]
          Length = 671

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 475/655 (72%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L +GI   EK Q+L+G TG+GKTFT++ VI+ + +P +V+A
Sbjct: 15  FELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKNVNKPTLVLA 74

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 75  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 134

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y +  + L++G  +E+ +LL+ L+  Q++R 
Sbjct: 135 SATSSLLERNDVIVVASVSSIFGLGDPHEYREHTISLRVGQEIERNKLLNDLIDIQFERN 194

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E  PLTG+ I + E I I+
Sbjct: 195 DIDFQRGRFRVRGDVVEIFPASRDESALRVEFFGDEIDRIREIDPLTGETIADREHIAIF 254

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L TA++ I++EL+ R  EL+ EG+LLEAQRL+QR TYD+EML+  G C 
Sbjct: 255 PATHFMTNEERLGTAIEGIQQELEERTTELKNEGKLLEAQRLQQRTTYDIEMLKEMGYCS 314

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P TL ++ P+D L+ VDESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 315 GIENYSRHMDGRKPGEAPYTLLDFFPDDFLIVVDESHVTMPQVRGMYNGDRARKQMLVDY 374

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL  EE+       I +SATPG +E E+    +V+QIIRPTGL+DP +E
Sbjct: 375 GFRLPSALDNRPLTREEFEKHVNQIIYMSATPGPYEQEKTSH-VVQQIIRPTGLLDPEIE 433

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   +   R+ +T LTK+MAEDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 434 VRPIMGQMDDLVGEINKRVELNERVFVTTLTKKMAEDLTDYFKEMGIKVKYLHSDIKTLE 493

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RDLR+GKFDVLVGINLLREG+D+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 494 RTEIVRDLRMGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 553

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD +T S++ AI ET RRR  Q ++NK HNI P+++ + I   I      +
Sbjct: 554 NASGHVIMYADDVTPSMEAAIKETKRRRSIQEQYNKDHNIIPKTIIKPIRAAISISSKVN 613

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            + TNIS       +SKK+    + +L +QM  AA  L+FEEAA +RD +  LK+
Sbjct: 614 KSDTNISDTVDFADMSKKEQLEMISNLEEQMREAAKKLDFEEAATLRDTVMELKA 668


>gi|323144279|ref|ZP_08078901.1| excinuclease ABC, B subunit [Succinatimonas hippei YIT 12066]
 gi|322415949|gb|EFY06661.1| excinuclease ABC, B subunit [Succinatimonas hippei YIT 12066]
          Length = 680

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/665 (53%), Positives = 468/665 (70%), Gaps = 12/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + +  +GDQ  AI  L+KGI   +K Q LLGVTGSGKTFTMA VI  + RP ++++
Sbjct: 7   FELVSPFKAAGDQVEAIDALVKGIQKGDKAQTLLGVTGSGKTFTMANVIAKLNRPTMILS 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E + FFP NAVEYFVSYYDYYQPEAY+  TDT+IEK++ +NE ID+MR 
Sbjct: 67  HNKTLAAQLYGEMREFFPKNAVEYFVSYYDYYQPEAYIAATDTFIEKDAKVNEHIDQMRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++V SVS IYG+G  E+Y +M++ L  G+ + Q+++++ L + QY R 
Sbjct: 127 SATKALMERRDVVIVCSVSAIYGLGEPETYLKMMLHLSRGEFISQRDIVTRLAELQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+IFP+  E  A RV +F +++E+I  F PLTG     +    ++
Sbjct: 187 DVAFTRSTFRVRGDVIDIFPAESEGFAIRVELFDDEVEKILRFDPLTGAIEAELPRFTVF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTP+  L  A++ IK +LK R        +LLE QRL +R  YD+EM+   G C 
Sbjct: 247 PKTHYVTPKEILQRAVEEIKVDLKERCDYFLSNNKLLEEQRLRERTAYDIEMINEIGYCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR  GEPPP LF+Y+P+D LL +DESHVT+PQI  MYRGD  RK  L  +
Sbjct: 307 GIENYSRYLTGRKEGEPPPCLFDYLPKDGLLIIDESHVTVPQIGAMYRGDRSRKENLVNF 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+  L+P TI VSATP  +ELE     +VEQ+IRPTGL+DP +E
Sbjct: 367 GFRLPSAFDNRPLKFEEFKKLQPQTIYVSATPADYELE-ASSQVVEQLIRPTGLLDPEIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A +  R+L+T LTK+MAE+LT YL E  IRVRY+HS++ T+E
Sbjct: 426 VRPVATQVDDLMSEIRIRAAKNERVLVTTLTKKMAEELTSYLEEHGIRVRYLHSDIDTVE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FD LVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQT+GRAAR
Sbjct: 486 RMEIIRDLRLGEFDALVGINLLREGLDMPEVSLVAILDADKEGFLRSSRSLIQTVGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           NV  K I YAD IT S+++ IDET RRR+ Q + N++HNI P+ +++KI++V++  L   
Sbjct: 546 NVKGKAIFYADKITDSMRVTIDETKRRRDIQQKFNEEHNITPKQIEKKIVDVMEVALTQT 605

Query: 739 ------EDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                 E+     IS    D ++  LS K+  A +  L +QM   A  L FEEAA +RDE
Sbjct: 606 SVFKAPEEKRERPISFKEWDKRRHKLSAKELSAKIDKLEEQMLKLASELKFEEAASVRDE 665

Query: 790 IKRLK 794
           ++ L+
Sbjct: 666 MQALQ 670


>gi|312897551|ref|ZP_07756971.1| excinuclease ABC subunit B [Megasphaera micronuciformis F0359]
 gi|310621403|gb|EFQ04943.1| excinuclease ABC subunit B [Megasphaera micronuciformis F0359]
          Length = 720

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/665 (54%), Positives = 471/665 (70%), Gaps = 4/665 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ + P+GDQPAAI  L  GI S +  Q+LLG TG+GKT+TMAK+IE +Q+P +++A
Sbjct: 16  FRVESPFEPTGDQPAAIDSLAHGIESGQWAQVLLGATGTGKTYTMAKLIERVQKPTLIIA 75

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP N V YFVSYYDYYQPEAY+P TDTYIEK+S+IN++ID++RH
Sbjct: 76  HNKTLAAQLCSEFKAFFPDNEVGYFVSYYDYYQPEAYIPTTDTYIEKDSAINDEIDKLRH 135

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G  E YS +++ L++G    Q E+L  LV  QY R 
Sbjct: 136 SATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQEKSQTEILRKLVDIQYTRN 195

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RGTFRV GD+IE+FP+  +    R+ MFG++I+ ++E   LTG+ +   + I +Y
Sbjct: 196 DLDLQRGTFRVHGDTIEVFPAAFDSSVIRIEMFGDEIDRMTEVDVLTGEVLAERKHIAVY 255

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +  +  A+  I EELK RL  L+   RLLEAQRLEQR  YD+EM+E  G C 
Sbjct: 256 PASHYVTTKEKMQRALGTISEELKERLQYLKSRERLLEAQRLEQRTRYDMEMMEEMGYCS 315

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GE P TL +Y P+D ++ +DESHVTIPQ+  MY GD  RK +L EY
Sbjct: 316 GIENYSRHLSGRKAGEAPYTLLDYFPDDFMILIDESHVTIPQLRAMYAGDQSRKESLVEY 375

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F+E+       + VSATPG +E+E  Q  + +QIIRPTGL+DP VE
Sbjct: 376 GFRLPSAKDNRPLNFDEFTERINQIVYVSATPGDYEME-VQTNLAQQIIRPTGLLDPKVE 434

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+MAEDLTE+L E  I VRY+HS++ T+E
Sbjct: 435 VRPVTGQMDDLLGEIRKRIEKKERVLVTTLTKKMAEDLTEFLKETGILVRYLHSDIATIE 494

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T+LIQT+GRAAR
Sbjct: 495 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTALIQTMGRAAR 554

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YADT+T S+Q A+DET RRR  Q  +NK+H+I P+SVK+   EV++ I L  
Sbjct: 555 NEHGTVIMYADTVTGSMQRAMDETERRRAVQEAYNKEHHITPKSVKK---EVVNLIELTK 611

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
            +       A    L+K+     + SL ++M  A+  L FE+AA IRD + RL+      
Sbjct: 612 VSEEEKGYGAADELLTKEALHKVIHSLTQEMKKASRQLEFEKAAEIRDRLGRLRQELSQM 671

Query: 801 GLDDS 805
             DD+
Sbjct: 672 SHDDT 676


>gi|227488124|ref|ZP_03918440.1| excision endonuclease subunit B [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227091986|gb|EEI27298.1| excision endonuclease subunit B [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 697

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/661 (53%), Positives = 487/661 (73%), Gaps = 9/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L + I   EK  +L+G TG+GK+ T A +IE +QRP +VMA
Sbjct: 28  FEVISEYEPAGDQPKAIKELTERIQRGEKDIVLMGATGTGKSATAAWLIEQVQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH
Sbjct: 88  PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VVSSVSCIYG+G+ +SY    +++++G+ +++   L  LV  QY+R 
Sbjct: 148 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSLKIEVGEEIDRDRFLRLLVDIQYERN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RG FRV GD+++I P++ E+VA RV  FG++++++   +PLTG+ IRNV+ ++I+
Sbjct: 208 DYDLKRGAFRVKGDTVDIIPAY-EEVAVRVEFFGDEVDQLYYIHPLTGEIIRNVDVLRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY+     +  A++ I+EEL+ R+   E  G+LLEAQRL  R  YDLEM+E  G C 
Sbjct: 267 PATHYIASEGRVEKAIEQIREELEERITSFENRGKLLEAQRLRMRTEYDLEMIEEMGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G+PPPTL +Y PED L  +DESHVT+PQI GMY GD  RK  L E+
Sbjct: 327 GIENYSRHMDGREAGDPPPTLIDYFPEDFLTIIDESHVTVPQIGGMYEGDASRKRNLVEF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE+   +  T+ +SATPG +EL    G  VEQ+IRPTGLVDP + 
Sbjct: 387 GFRLPSALDNRPLTWEEFEERKGQTVYMSATPGDYELAAAGGEFVEQVIRPTGLVDPKIV 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI + A++  R+L+T LTK+MAEDLTEYL E  +RVRYMHS+V TL+
Sbjct: 447 VKPTKGQIDDLIHEIRVRAEKKERVLVTTLTKKMAEDLTEYLQENGVRVRYMHSDVDTLQ 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 507 RVELLRKLRLGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTKSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD+IT S+Q AIDET RRRE Q+ +NK+H I+PQ +++KI +++D ++ ED
Sbjct: 567 NVSGEVHMYADSITDSMQQAIDETERRREMQIAYNKEHGIDPQPLRKKIADILD-LVYED 625

Query: 741 A-------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           A       A   ++ D    ++++ + +  +K LR QM  AA  LNFE AAR+RDEI  L
Sbjct: 626 AEEGETPSADAVVAKDYDVSTMAQDEVEKLIKDLRAQMGAAARELNFELAARLRDEIVSL 685

Query: 794 K 794
           +
Sbjct: 686 E 686


>gi|311898894|dbj|BAJ31302.1| putative UvrABC system protein B [Kitasatospora setae KM-6054]
          Length = 696

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/683 (53%), Positives = 481/683 (70%), Gaps = 21/683 (3%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           I +  + +  F++ + Y P+GDQPAAIA+L + + + EK  +LLG TG+GK+ T A +IE
Sbjct: 4   ITSIERSVAPFEVVSPYQPNGDQPAAIAELERRVRAGEKDVVLLGATGTGKSATTAWMIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SS
Sbjct: 64  KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +V+LK+G+ V++  LL 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVRLKVGEEVDRDALLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD++EIFP + E++A R+ MFG++IE +   +PLTG+ 
Sbjct: 184 RFVDIQYTRNDLAFTRGTFRVRGDTVEIFPVY-EELAVRIEMFGDEIEALYTLHPLTGEV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I   +++ ++  SHYV     +  A+  I+ EL+  L  +EK+G+LLEAQRL  R TYD+
Sbjct: 243 ISQDDSVYVFPASHYVAGPERMERAIAGIEAELEQSLARMEKQGKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML   G+C  +ENYS +  GR PG PP TL +Y PED LL +DESHVT+PQI  MY GD
Sbjct: 303 EMLRQIGTCSGVENYSMHFDGREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL E+GFRLPS MDNRPL++EE+      T+ +SATPG +EL +  G  VEQIIR
Sbjct: 363 ASRKRTLVEHGFRLPSAMDNRPLKWEEFQERIGQTVYLSATPGKYELARGDG-QVEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DP V ++    Q++D+  EI     +  R+L+T LTK+MAEDLT+Y    +IRVR
Sbjct: 422 PTGLIDPEVIVKPTEGQIDDLVHEIRQRVAKDERVLVTTLTKKMAEDLTDYFLGLDIRVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS
Sbjct: 482 YLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT ++ LAI ET RRR  Q  +N++H I+PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMDLAISETNRRRAVQQAYNEEHGIDPQPLRKKIG 601

Query: 731 EVIDPILLEDAATTNISIDA--QQ---------LSLSKKKGK----AHLKSLRKQ----M 771
           +++  +  ED  T  +      QQ         L + +K  K    A L  L +Q    M
Sbjct: 602 DLLSSMSGEDVDTEELLATGYRQQGKGRAPVPSLGIDRKPAKSLPAAELADLIQQMTERM 661

Query: 772 HLAADNLNFEEAARIRDEIKRLK 794
           H AA  L FE AAR+RDE+K LK
Sbjct: 662 HTAAAELQFEAAARLRDEVKELK 684


>gi|139473634|ref|YP_001128350.1| excinuclease ABC subunit B [Streptococcus pyogenes str. Manfredo]
 gi|189038004|sp|A2RE43|UVRB_STRPG RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|134271881|emb|CAM30118.1| UvrABC system protein B (UvrB protein) [Streptococcus pyogenes str.
           Manfredo]
          Length = 663

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/657 (54%), Positives = 473/657 (71%), Gaps = 9/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + +  LL+ LV  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTG+ I  V+ + ++
Sbjct: 190 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVDHLVLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML   G   
Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 310 GVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+ Q   II EQIIRPTGL+DP ++
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGEYEMSQTNTII-EQIIRPTGLLDPEID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  Q++D+  EIN    +  R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPSMGQIDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I  +I       
Sbjct: 549 NVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI----- 603

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + T++  I  +++   S+S+ + K  + +L+KQM  AA+ L+FE AA++RD I  LK
Sbjct: 604 SKTSHNDISKEEMDYESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660


>gi|120602573|ref|YP_966973.1| excinuclease ABC subunit B [Desulfovibrio vulgaris DP4]
 gi|189037964|sp|A1VDN0|UVRB_DESVV RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|120562802|gb|ABM28546.1| Excinuclease ABC subunit B [Desulfovibrio vulgaris DP4]
          Length = 677

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/672 (52%), Positives = 468/672 (69%), Gaps = 20/672 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F++ T++ P+GDQP AI Q++  +    + Q+LLGVTGSGKTFT+A VI A  RPA++
Sbjct: 4   TCFRLHTEFEPTGDQPEAIGQIVANLGQGVRDQVLLGVTGSGKTFTVANVIAACNRPALI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+EF+  FP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ ID++
Sbjct: 64  LAPNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R D ++V+SVSCIYG+GS E Y+++++ ++ G       L++ LV+ QY+
Sbjct: 124 RHAATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEVQYQ 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD +E+ P++  + A R+  FG+DI+ ISE  PLTG+ + +V    
Sbjct: 184 RNDFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVGKTV 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYV+ R  L  AM  I++EL  RL E +   RL+EAQRLEQR   DLEM+E  G 
Sbjct: 244 IYPASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L GR  G+PP  L +Y P+D LLFVDESH+T+PQ+  MY+GD  RK+TL 
Sbjct: 304 CNGIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKSTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS +DNRPL F E+      T+ VSATPG WEL++ QG+I EQIIRPTGLVDP 
Sbjct: 364 DFGFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLVDPV 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R  R QV+D+  E    A +  R+L+T LTKRMAEDLTE+L    + VRY+HS++ T
Sbjct: 424 VEVRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+ II+ LR G+ DVLVGINLLREGLDIPE  LV+ILDADKEGFLRS  SLIQT GRA
Sbjct: 484 MERMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN   +VILYADT+T S++ A+DET RRRE+Q   N+ + I P+++++ +    D I  
Sbjct: 544 ARNAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDAIYS 603

Query: 739 EDA----------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
             +                A  N++    +   S +    H++ L ++M  AA  L FE 
Sbjct: 604 AASEGGKGRGRGRGRQAAPAVENVA----EYGTSPEDMAKHIQKLEREMREAAKELEFER 659

Query: 783 AARIRDEIKRLK 794
           AA +RD I+ L+
Sbjct: 660 AATLRDRIRLLR 671


>gi|303229510|ref|ZP_07316298.1| excinuclease ABC, B subunit [Veillonella atypica ACS-134-V-Col7a]
 gi|302515635|gb|EFL57589.1| excinuclease ABC, B subunit [Veillonella atypica ACS-134-V-Col7a]
          Length = 726

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/681 (52%), Positives = 484/681 (71%), Gaps = 28/681 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P+GDQP AI  L  GI   E  Q+LLG TG+GKTFTMAKVIEA+Q+P +++A
Sbjct: 14  FKVEAPFTPTGDQPTAIQSLTDGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKPTLIIA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++ID++RH
Sbjct: 74  HNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEIDKLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G  E YS +++ L++G +  + E+LS LV  QY R 
Sbjct: 134 SATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQTKSRDEILSKLVDIQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  IRGTFRV GD+IEIFP+   + A RV +FG++I+ + E   LTG+ I   + + +Y
Sbjct: 194 DMNFIRGTFRVQGDTIEIFPAAYSERAIRVELFGDEIDRLVEVDALTGEVIAERKHVAVY 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +  +  A++ I+ EL  +L +L+ E RLLEAQRLEQR  YD+EM++  G C 
Sbjct: 254 PASHYVTTKEKMKIAVERIEAELDEQLAKLKAEDRLLEAQRLEQRTRYDIEMMQEMGYCS 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++ R  GE P TL +Y P+D L+ VDESHVTIPQ+  MY GD  RK +L EY
Sbjct: 314 GIENYSRHMSERKAGEAPYTLIDYFPDDFLIMVDESHVTIPQVRAMYNGDRARKESLIEY 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       + VSATPG +E+E  +  + EQIIRPTG++DP +E
Sbjct: 374 GFRLPSALDNRPLKFDEFVERINQIVYVSATPGPYEME-VETNVAEQIIRPTGILDPSIE 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EI+  A +  R+L+T LTK+MAEDLTE+L E  +RVRY+HS++ T+E
Sbjct: 433 IRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSDIVTIE 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T++IQTIGRAAR
Sbjct: 493 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN  VI+YAD +T S+Q A+DET RRR  Q  +N +H+I P+SV + + E+I+   +E+
Sbjct: 553 NVNGHVIMYADRVTGSMQRAMDETDRRRAVQEAYNIEHHITPKSVSKDVKELIELTKIEE 612

Query: 741 AATTNI--------------------------SIDAQQLS-LSKKKGKAHLKSLRKQMHL 773
              T+                             DA +++ ++ ++    ++ L +QM  
Sbjct: 613 DMVTDGKGLSPKKGKKKSSAAGMDHGHEPYAQDADATKVAEITAEELYNKIEELDRQMKA 672

Query: 774 AADNLNFEEAARIRDEIKRLK 794
           AA  L FE+AA++RD++  L+
Sbjct: 673 AAKQLEFEKAAKLRDQLGELR 693


>gi|260903783|ref|ZP_05912105.1| excinuclease ABC subunit B [Brevibacterium linens BL2]
          Length = 710

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/690 (52%), Positives = 480/690 (69%), Gaps = 30/690 (4%)

Query: 133 NHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
            H  D+T     F++ ++Y PSGDQP AI ++ + +   E+  +LLG TG+GK+ T A +
Sbjct: 11  GHRPDVTRTVAPFEVVSEYSPSGDQPTAITEISERLDQGERDIVLLGATGTGKSATTAWL 70

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP ++MAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+
Sbjct: 71  IEQVQRPTLIMAPNKTLAAQLANEFRQLLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKD 130

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+N++++R+RHSAT SLL R D +VVS+VSCIYG+G+ E Y   +V L+ G+  ++ EL
Sbjct: 131 SSVNDEVERLRHSATNSLLTRRDVVVVSTVSCIYGLGTPEEYVDRMVTLQRGEQCDRDEL 190

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD++EI P + E++A R+  FG+ IE +   +PLTG
Sbjct: 191 LKRFVSMQYARNDMAFTRGTFRVRGDTVEIIPQY-EELALRIEFFGDVIESLQTLHPLTG 249

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + +R  ETI ++  SHYV     +  A+  I++EL+ RL E E + +LLEAQRL+ R TY
Sbjct: 250 EIVREEETIHVFPASHYVAGENRMGRAVSEIEDELQKRLSEFESQNKLLEAQRLKMRTTY 309

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEM+E+ G    IENYSR++ GR  G  P  L +Y PED LL VDESHVT+PQI GMY 
Sbjct: 310 DLEMMESMGFTSGIENYSRHIDGRPAGSAPNCLLDYFPEDFLLVVDESHVTVPQIGGMYE 369

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS MDNRPL+F+E+       + +SATPG++EL    G  V+QI
Sbjct: 370 GDMSRKRTLVEHGFRLPSAMDNRPLKFDEFRERIGQAVYLSATPGNFELGNANGY-VQQI 428

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++  + Q++D+ DEI        R+L+T LTK+MAEDLT+YL E ++R
Sbjct: 429 IRPTGLVDPEIVVKPTKGQIDDLLDEIRTRVDAQERVLVTTLTKKMAEDLTDYLLEHDVR 488

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V+Y+HS+V TL R+E++ +LR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 489 VQYLHSDVDTLRRVELLTELRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSA 548

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARN+N +V +YADTIT+S++ AIDET RRRE Q+ HNK+H I+P  + +K
Sbjct: 549 TSLIQTIGRAARNINGQVHMYADTITRSMREAIDETDRRREIQVAHNKEHGIDPMPLVKK 608

Query: 729 IMEVIDPILLEDAATT---------------NISIDAQQLSLSKKKGKAH---------L 764
           I ++ + +  EDA T                N ++  +Q   + K G            +
Sbjct: 609 IADITERLQREDADTRELLTEFDYGKGKRGYNSTLTDEQRQAAGKSGSLRPPAADLTELI 668

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +SL  QMH AA  L FE AAR+RDE+  LK
Sbjct: 669 ESLTSQMHTAAAELQFELAARLRDELSDLK 698


>gi|329769751|ref|ZP_08261152.1| UvrABC system protein B [Gemella sanguinis M325]
 gi|328838113|gb|EGF87731.1| UvrABC system protein B [Gemella sanguinis M325]
          Length = 665

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/655 (53%), Positives = 467/655 (71%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q+ + P GDQ  AI +L +GI++ EK Q LLG TG+GKTFT+A +I+ + +P +V+A
Sbjct: 10  FDLQSKFEPKGDQVRAINELTEGINNGEKYQTLLGATGTGKTFTIANIIKNVGKPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY+E K FFP+N VEYFVSYYDY+QPEAYVP TDTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYNELKEFFPNNRVEYFVSYYDYFQPEAYVPSTDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL +R+D I+VSSVSCIYG+GS E YS +++ L++GD + + ++LS L+  QY R 
Sbjct: 130 SATSSLFDRDDVIIVSSVSCIYGLGSPEEYSSLVLSLRVGDEISRNKILSKLIDIQYMRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD IEIFP+   + + R+ MFG++I+ I E   LTG+ +  +E I IY
Sbjct: 190 DIEFTRGTFRVRGDVIEIFPASRSENSVRIEMFGDEIDRIREINSLTGEVLSELEHIAIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+V        A+K I+ EL+ RL     E +LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 250 PASHFVAGEEKTKEAIKRIRAELEDRLKVFNMENKLLEAQRLEQRTNYDLEMMEEMGFCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R PG  P TL +Y P+D LL VDESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSLHLTLREPGSTPYTLLDYFPKDWLLVVDESHVTLPQVRGMYNGDRARKQVLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL ++E+       I VSATPG +ELE     I EQIIRPTGL+DP ++
Sbjct: 370 GFRLPTALDNRPLNYQEFENKLNQAIFVSATPGDYELEHSSK-ITEQIIRPTGLLDPVID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV D+  E     ++G R+L+T LTK+MAE LT YL E  ++V Y+HS++KTLE
Sbjct: 429 VRPVSDQVFDITKEAEKIIEKGERVLITTLTKKMAESLTAYLKENGLKVEYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLGKFD+LVGINLLREGLDIPE  LVAILDADKEGFLR   +L+QTIGRAAR
Sbjct: 489 RTEIIRNLRLGKFDILVGINLLREGLDIPEVSLVAILDADKEGFLRGDKALLQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +T+S++ AIDET RRRE Q+ +N++H I PQ++   I ++ D I  + 
Sbjct: 549 NANGRVIMYADNMTRSMKKAIDETNRRREIQMAYNEEHGITPQTI---IKDIRDSISAKK 605

Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               + +++ +++S ++    + HL  L ++M  AA+   FE AA++RD I  LK
Sbjct: 606 EVIEDETLELEEVSNITDDNIEEHLAELEQEMFSAAEKFEFERAAKLRDTIAELK 660


>gi|71903721|ref|YP_280524.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS6180]
 gi|90111056|sp|Q48SZ1|UVRB_STRPM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|71802816|gb|AAX72169.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS6180]
          Length = 663

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/657 (54%), Positives = 473/657 (71%), Gaps = 9/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + +  LL+ LV  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTG+ I  V+ + ++
Sbjct: 190 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVDHLVLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML   G   
Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 310 GVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       I VSATPG +E+ Q   II EQIIRPTGL+DP ++
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIIYVSATPGEYEMSQTNTII-EQIIRPTGLLDPEID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  Q++D+  EIN    +  R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I  +I       
Sbjct: 549 NVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI----- 603

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + T++  I  +++   S+S+ + K  + +L+KQM  AA+ L+FE AA++RD I  LK
Sbjct: 604 SKTSHNDISKEEMDYESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660


>gi|320354361|ref|YP_004195700.1| Excinuclease ABC subunit B [Desulfobulbus propionicus DSM 2032]
 gi|320122863|gb|ADW18409.1| Excinuclease ABC subunit B [Desulfobulbus propionicus DSM 2032]
          Length = 678

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/663 (53%), Positives = 470/663 (70%), Gaps = 9/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ PSGDQPAAI +L   + +  + Q+LLGVTGSGKTFTMA+V+  +QRP +VMA
Sbjct: 9   FEIVSDFTPSGDQPAAIDRLTANLEAGVRDQILLGVTGSGKTFTMAQVVARVQRPTLVMA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL++EF+  FPHNAVEYFVSYYDYYQPEAY+P +DTYIEK+SSIN+ ID++RH
Sbjct: 69  PNKTLAAQLFAEFRELFPHNAVEYFVSYYDYYQPEAYIPASDTYIEKDSSINDAIDKLRH 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL R D ++V+SVSCIYG+GS + Y  M + L++GD    +E+   L    Y+R 
Sbjct: 129 SATRSLLTRRDVLIVASVSCIYGLGSPDEYKNMHLFLRVGDDYPMEEVQRRLAFMLYERN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RGTFRV GD I+IFP H E+ A RV  FG+ I+ +S   PL G  + +V  + ++
Sbjct: 189 EFSFHRGTFRVRGDVIDIFPVHEEEHAVRVEFFGDTIDSLSIIDPLRGVVVADVAEMTVF 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT +  L +AM+ I++EL++RL EL+ + RL+EAQRLEQR  +DLEM+   G C 
Sbjct: 249 PGSHFVTSQDNLKSAMRSIQDELQLRLSELQADNRLVEAQRLEQRTLFDLEMIAELGYCN 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PG PPP L +Y P+D LL +DESH+ +PQI GM+ GD  RK TL  Y
Sbjct: 309 GIENYSRHLTGKEPGAPPPNLLDYFPDDYLLIIDESHIGVPQIGGMFNGDRSRKQTLVNY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+       + VSATPG +EL +    IVEQ+IRPTGL+DP +E
Sbjct: 369 GFRLPSALDNRPLRFDEFEQRIRQVVYVSATPGPYELNKAGEHIVEQLIRPTGLLDPRIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+ +EI + A++   +L+T LTKRMAEDLT+Y  E  IRVRY+HS++KTLE
Sbjct: 429 VRPAATQVDDLLEEIRVRAERNQAVLVTTLTKRMAEDLTQYYEELGIRVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E+IR+LR  ++DVL+GINLLREGLDIPE  LVA+LDADKEGFLRS+ SL+QT GRAAR
Sbjct: 489 RVELIRELRHREYDVLIGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLVQTCGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733
           N    VILYAD IT S++  IDET RRR  Q  +N++  I PQ+V  +I + +       
Sbjct: 549 NAEGTVILYADKITPSMRYTIDETNRRRAIQEAYNRERGIVPQTVISEIKDAMAQHLRAA 608

Query: 734 --DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
              P    +A     + + + +  S  +    +  L K+M  AA  L FEEAA  RD I+
Sbjct: 609 GWQPADEYEAPGLLTAAEPEVVYHSVDELHREIAELEKKMQEAAKQLAFEEAAGYRDRIR 668

Query: 792 RLK 794
            LK
Sbjct: 669 ELK 671


>gi|46580016|ref|YP_010824.1| excinuclease ABC subunit B [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81830433|sp|Q72BN0|UVRB_DESVH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|46449432|gb|AAS96083.1| excinuclease ABC, B subunit [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233985|gb|ADP86839.1| excinuclease ABC, B subunit [Desulfovibrio vulgaris RCH1]
          Length = 677

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/672 (52%), Positives = 468/672 (69%), Gaps = 20/672 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F++ T++ P+GDQP AI Q++  +    + Q+LLGVTGSGKTFT+A VI A  RPA++
Sbjct: 4   TCFRLHTEFEPTGDQPEAIGQIVANLGHGVRDQVLLGVTGSGKTFTVANVIAACNRPALI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+EF+  FP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ ID++
Sbjct: 64  LAPNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R D ++V+SVSCIYG+GS E Y+++++ ++ G       L++ LV+ QY+
Sbjct: 124 RHAATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEVQYQ 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD +E+ P++  + A R+  FG+DI+ ISE  PLTG+ + +V    
Sbjct: 184 RNDFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVGKTV 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYV+ R  L  AM  I++EL  RL E +   RL+EAQRLEQR   DLEM+E  G 
Sbjct: 244 IYPASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L GR  G+PP  L +Y P+D LLFVDESH+T+PQ+  MY+GD  RK+TL 
Sbjct: 304 CNGIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKSTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS +DNRPL F E+      T+ VSATPG WEL++ QG+I EQIIRPTGLVDP 
Sbjct: 364 DFGFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLVDPV 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R  R QV+D+  E    A +  R+L+T LTKRMAEDLTE+L    + VRY+HS++ T
Sbjct: 424 VEVRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+ II+ LR G+ DVLVGINLLREGLDIPE  LV+ILDADKEGFLRS  SLIQT GRA
Sbjct: 484 MERMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN   +VILYADT+T S++ A+DET RRRE+Q   N+ + I P+++++ +    D I  
Sbjct: 544 ARNAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDAIYS 603

Query: 739 EDA----------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
             +                A  N++    +   S +    H++ L ++M  AA  L FE 
Sbjct: 604 AASEGGKGKGRGRGRQAAPAVENVA----EYGTSPEDMAKHIQKLEREMREAAKELEFER 659

Query: 783 AARIRDEIKRLK 794
           AA +RD I+ L+
Sbjct: 660 AATLRDRIRLLR 671


>gi|111223999|ref|YP_714793.1| excinuclease ABC subunit B [Frankia alni ACN14a]
 gi|111151531|emb|CAJ63249.1| ATP-dependent DNA excision repair enzyme UvrABC, UvrB subunit
           [Frankia alni ACN14a]
          Length = 725

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/682 (52%), Positives = 480/682 (70%), Gaps = 30/682 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ PSGDQPAAI +L + + + +   +LLG TG+GK+ T A ++E +QRP +VMA
Sbjct: 34  FEVVSDFSPSGDQPAAIDELARRVRAGDTNVVLLGATGTGKSATTAWLVERLQRPTLVMA 93

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE+++R+RH
Sbjct: 94  PNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEEVERLRH 153

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D IVV+SVSCIYG+G+ + Y   +V+L++GD +E+  LL   V  QY R 
Sbjct: 154 SATMSLLTRRDVIVVASVSCIYGLGTPQEYIDRMVRLRVGDEIERDLLLRRFVDVQYTRN 213

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++E+FP + E++A RV MFG++IE ++  +PLTG+ +R VE I ++
Sbjct: 214 DLAFTRGTFRVRGDTVEVFPVY-EELAVRVEMFGDEIERLTYLHPLTGEIVREVEEIFVF 272

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+ EL  RL  +E++G+LLEAQRL  R TYD+EM+   G C 
Sbjct: 273 PATHYVAGPERMERAIAGIEAELAERLATMERQGKLLEAQRLRMRTTYDIEMMRQVGFCS 332

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y P+D LL +DESHVT+PQI GMY GD  RK  L E+
Sbjct: 333 GIENYSRHIDGREAGTAPHTLLDYFPDDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEH 392

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPLR+EE+      T+ +SATPG +EL +  G +VEQIIRPTGL+DP V 
Sbjct: 393 GFRLPSAMDNRPLRWEEFLERIGQTVYLSATPGPYELGRADG-VVEQIIRPTGLLDPEVV 451

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI L A++  R+L+T LTK+M+EDLT+YL E  IRVRY+HSEV TL 
Sbjct: 452 LKPTKGQIDDLVHEIRLRAERDERVLVTTLTKKMSEDLTDYLLELGIRVRYLHSEVDTLR 511

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++ +LR G FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 512 RVELLTELRRGDFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSDKSLIQTIGRAAR 571

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRREKQ+ +N +  ++PQ +++K+++++D ++ E 
Sbjct: 572 NVSGQVHMYADKITPSMRHAIDETNRRREKQMAYNAERGLDPQPLRKKVVDILDDMVRES 631

Query: 741 AATTNISIDAQQLSLS-------KKKGKAH---------------------LKSLRKQMH 772
           A    I    +  S         K +G A                      ++ L  QMH
Sbjct: 632 AEGELIGGGGRSQSRGKAPVPGMKSRGGAQGTVGRYAAELAGMPSHELAQLIRQLDDQMH 691

Query: 773 LAADNLNFEEAARIRDEIKRLK 794
            AA  L FE AAR+RDEI  LK
Sbjct: 692 EAAKELQFELAARLRDEIAELK 713


>gi|313837402|gb|EFS75116.1| excinuclease ABC subunit B [Propionibacterium acnes HL037PA2]
 gi|314927925|gb|EFS91756.1| excinuclease ABC subunit B [Propionibacterium acnes HL044PA1]
 gi|314971786|gb|EFT15884.1| excinuclease ABC subunit B [Propionibacterium acnes HL037PA3]
 gi|328907048|gb|EGG26814.1| excinuclease ABC, B subunit [Propionibacterium sp. P08]
          Length = 701

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/689 (51%), Positives = 489/689 (70%), Gaps = 27/689 (3%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + + ++ +  F + +++ PSGDQP AIA+L K ++  E+  +LLG TG+GKT T+A + E
Sbjct: 4   VTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNDGEQDVVLLGATGTGKTATVAWLAE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VM PNK LAAQ   E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS
Sbjct: 64  KLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +NE+++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y   ++ L++G   ++ ELL 
Sbjct: 124 LNEEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDELLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV  QY R DI   RGTFRV GD++EIFP + E+ A RV  FG++IE ++  +PLTG+ 
Sbjct: 184 DLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTGEV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I   E + ++  +HYV     +  A+  I++EL+ RL  LE++G+LLEAQRL  R TYD+
Sbjct: 243 ISEDEQVYVFPATHYVAGPERMERAIVSIQQELEERLAVLERDGKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM++  G+C  IENYSR++ GR PG  P  L +Y PED +L +DESHVT+PQI GMY GD
Sbjct: 303 EMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL E+GFRLPS MDNRPL+F+E+      T+ +SATPGS+E+E+  G+ VEQIIR
Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLKFDEFTERIGQTVYLSATPGSYEIERAHGV-VEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++    Q++D+  EI+    +G R+L+T LTK+MAEDLT+YL E  IR R
Sbjct: 422 PTGLVDPEIIVKPTHGQIDDLMGEIHTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIRTR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ S
Sbjct: 482 YLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQT+GRAARNVN +VI+YAD +T S+++AI+ET RRR+ Q+ +NK+H I+PQ +++KI 
Sbjct: 542 LIQTVGRAARNVNGQVIMYADQVTDSMRIAINETNRRRDIQMAYNKEHGIDPQPLRKKIG 601

Query: 731 EVIDPILLEDAAT----------------TNISIDAQQLSLSKKKGKAHLK--------- 765
           ++ + +  E+A T                 ++  D Q+ +  K+   + +          
Sbjct: 602 DITEMLAREEADTDQLVERFNYGKGHRGYNSMITDEQRAAQGKRLDASKMAEEDLGNLIV 661

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +L  +M  AA  L FE AAR+RDEI  LK
Sbjct: 662 NLTNEMRSAAGELKFEVAARLRDEIADLK 690


>gi|300771027|ref|ZP_07080904.1| excision endonuclease subunit UvrB [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762300|gb|EFK59119.1| excision endonuclease subunit UvrB [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 677

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/669 (52%), Positives = 488/669 (72%), Gaps = 14/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L+ G++  E  Q LLGVTGSGKTFT+A VI+  Q+PA++++
Sbjct: 3   FKLTSEYQPTGDQPQAIKELVAGVNDGETYQTLLGVTGSGKTFTIANVIQETQKPALILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP N+V YFVSYYDYYQPEA++  ++TYIEK+ +INE+I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPENSVNYFVSYYDYYQPEAFIASSNTYIEKDLAINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           + T SL+  R D +VVSSVSCIYG+G+ E +S+ I +  +G ++ +   L  LV+  Y R
Sbjct: 123 ATTSSLMSGRRDIVVVSSVSCIYGMGNPEDFSRSIFRFAVGTTISRNAFLHKLVEILYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD+++++P++L D A RVS FG++I+E+S   P++ + I  +E + +
Sbjct: 183 TTAEFKRGTFRVKGDTVDVYPAYL-DYAIRVSFFGDEIDELSAIDPVSAKTINKMEDLAL 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VTP+     ++  I++EL  R  +LE EG++LEA+RLE+R+ YDLEM+   G C
Sbjct: 242 FPANLFVTPKEKFTQSIWAIQDELMQRKAQLEDEGKMLEAKRLEERVNYDLEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GR PG  P TL +Y P+D LL +DESHVTIPQ+  MY GD  RK +L E
Sbjct: 302 SGIENYSRFFDGRQPGMRPFTLLDYFPDDYLLVIDESHVTIPQLRAMYGGDRSRKVSLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL F E+  L   TI VSATPG +EL+Q +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAALDNRPLNFPEFESLTNQTIYVSATPGDYELQQTEGVVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R A  QV+D  ++++   ++G R+L T LTKRMAE+LT+Y+   NI+VRY+HSEVKTL
Sbjct: 422 EVRPAINQVDDFLEQVDKTIKEGGRVLATTLTKRMAEELTKYMTRLNIKVRYIHSEVKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R LRLG+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 482 ERVEILRGLRLGEFDVLVGVNLLREGLDLPEVTLVAILDADKEGFLRSERSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIME---VI 733
           RN   +VI+YAD +T S+Q+ IDET RRREKQ+++N++H+I P++V   +E+IME   V 
Sbjct: 542 RNDKGRVIMYADKMTDSMQITIDETNRRREKQMKYNEEHHITPRTVGKTREEIMEQTSVA 601

Query: 734 D------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           D       I +E   T  ++ D     LS+K  K  +++ +K+M  AA  ++F EAA++R
Sbjct: 602 DFNGMEPKIYVEPDPTVAVAADPVMQYLSEKDLKKAIETTKKRMEKAAKEMDFLEAAKLR 661

Query: 788 DEIKRLKSS 796
           DE+  L+ +
Sbjct: 662 DEMFSLEKA 670


>gi|90962150|ref|YP_536066.1| excinuclease ABC subunit B [Lactobacillus salivarius UCC118]
 gi|90821344|gb|ABD99983.1| Excinuclease ABC subunit B [Lactobacillus salivarius UCC118]
          Length = 666

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/655 (54%), Positives = 475/655 (72%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L +GI   EK Q+L+G TG+GKTFT++ VI+ + +P +V+A
Sbjct: 10  FELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKNVNKPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y +  + L++G  +E+ +LL+ L+  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPHEYREHTISLRVGQEIERNKLLNDLIDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E  PLTG+ I + E I I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDESALRVEFFGDEIDRIREIDPLTGETIADREHIAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L TA++ I++EL+ R  EL+ EG+LLEAQRL+QR TYD+EML+  G C 
Sbjct: 250 PATHFMTNEERLGTAIEGIQQELEERTTELKNEGKLLEAQRLQQRTTYDIEMLKEMGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P TL ++ P+D L+ VDESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRKPGEAPYTLLDFFPDDFLIVVDESHVTMPQVRGMYNGDRARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL  EE+       I +SATPG +E E+    +V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLTREEFEKHVNQIIYMSATPGPYEQEKTSH-VVQQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   +   R+ +T LTK+MAEDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 429 VRPIMGQMDDLVGEINKRVELNERVFVTTLTKKMAEDLTDYFKEMGIKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RDLR+GKFDVLVGINLL+EG+D+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTEIVRDLRMGKFDVLVGINLLKEGIDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD +T S++ AI ET RRR  Q ++NK HNI P+++ + I   I      +
Sbjct: 549 NASGHVIMYADDVTPSMEAAIKETKRRRSIQEQYNKDHNIIPKTIIKPIRAAISISSKVN 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            + TNIS       +SKK+    + +L +QM  AA  L+FEEAA +RD +  LK+
Sbjct: 609 KSDTNISDTVDFADMSKKEQLEMISNLEEQMREAAKKLDFEEAATLRDTVMELKA 663


>gi|29832815|ref|NP_827449.1| excinuclease ABC subunit B [Streptomyces avermitilis MA-4680]
 gi|81838137|sp|Q829Y6|UVRB_STRAW RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|29609936|dbj|BAC73984.1| putative excinuclease ABC subunit B [Streptomyces avermitilis
           MA-4680]
          Length = 713

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/700 (51%), Positives = 482/700 (68%), Gaps = 38/700 (5%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++   + +  F++ + Y PSGDQPAAIA+L + I + EK  +LLG TG+GK+ T A +IE
Sbjct: 4   VSKIERTVAPFEVVSPYQPSGDQPAAIAELDRRIRAGEKDVVLLGATGTGKSATTAWMIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 64  KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V L++GD V++ +LL 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLRVGDEVDRDDLLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ 
Sbjct: 184 RFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEI 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I + + + ++  SHYV     L  A   I++EL  RL ELEK+G+LLEAQRL  R TYDL
Sbjct: 243 ISDDQHLYVFPASHYVAGPERLERAANDIEKELGERLTELEKQGKLLEAQRLRMRTTYDL 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML   GSC  +ENYS +  GR PG PP TL +Y P+D LL +DESHVT+PQI  MY GD
Sbjct: 303 EMLRQIGSCSGVENYSMHFDGREPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL++EE+       + +SATPG +EL +  G  VEQIIR
Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQAVYLSATPGKYELSRGDG-FVEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+VR
Sbjct: 422 PTGLIDPEVVVKPTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS
Sbjct: 482 YLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +NK+  I+PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQVAYNKEKGIDPQPLRKKIN 601

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR---------------------- 768
           +++  I  ED  T  +     + +   K  KA + SL                       
Sbjct: 602 DIVAQIAREDIDTEQLLGSGYRQAKDGKGAKAPVPSLGGKAAAKGAKSAKGKAKETVPTD 661

Query: 769 --------------KQMHLAADNLNFEEAARIRDEIKRLK 794
                          +M  AA +L FE AAR+RDE+  +K
Sbjct: 662 RPAAKLAEEIEELTNRMRAAAADLQFEIAARLRDEVSEMK 701


>gi|301301267|ref|ZP_07207422.1| excinuclease ABC, B subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851143|gb|EFK78872.1| excinuclease ABC, B subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 666

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 473/655 (72%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L +GI   EK Q+L+G TG+GKTFT++ VI+ + +P +V+A
Sbjct: 10  FELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKNVNKPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y +  + L++G  +E+ +LL+ L+  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPHEYREHTISLRVGQEIERNKLLNDLIDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E  PLTG+ I + E I I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDESALRVEFFGDEIDRIREIDPLTGETIADREHIAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L TA++ I++EL+ R  EL+ EG+LLEAQRL+QR TYD+EML+  G C 
Sbjct: 250 PATHFMTNEERLGTAIEGIQQELEERTAELKSEGKLLEAQRLQQRTTYDIEMLKEMGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P TL ++ P+D L+ VDESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRKPGEAPYTLLDFFPDDFLIVVDESHVTMPQVRGMYNGDRARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL  EE+       I +SATPG +E E+    +V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLTREEFEKHVNQIIYMSATPGPYEQEKTSH-VVQQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   +   R+ +T LTK+MAEDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 429 VRPIMGQMDDLVGEINKRVELNERVFVTTLTKKMAEDLTDYFKEMGIKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RDLR+GKFDVLVGINLLREG+D+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTEIVRDLRMGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S++ AI ET RRR  Q ++NK HNI P+++ + I   I      +
Sbjct: 549 NAGGHVIMYADDVTPSMEAAIKETKRRRSIQEQYNKDHNIIPKTIIKPIRAAISISSKVN 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            + TNIS       +SKK+    + +L +QM  AA  L FEEAA +RD +  LK+
Sbjct: 609 KSDTNISDTVDFADMSKKEQLEMISNLEEQMREAAKKLGFEEAATLRDTVMELKA 663


>gi|25989628|gb|AAN28958.1| UvrB [Corynebacterium glutamicum]
          Length = 698

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/673 (53%), Positives = 479/673 (71%), Gaps = 12/673 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +++ P+GDQPAAI +L + +   E+  +L+G TG+GK+ T A +IE  QRPA+VMA
Sbjct: 28  FVVVSEFEPAGDQPAAIKELDERLDRGERNVVLMGATGTGKSATAAWLIEKQQRPALVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH
Sbjct: 88  PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ +SY    V L +G+ +++   L  LV  QY+R 
Sbjct: 148 SATSSLLSRRDIVVVSSVSCIYGLGTPQSYLDRSVVLNVGEEIDRDRFLRLLVDIQYERN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+G  RG FRV GD+++I P++ E++A R+  FG++I+ +   +PLTG  IR V  I+I+
Sbjct: 208 DVGFTRGAFRVKGDTVDIIPAY-EELAVRIEFFGDEIDALYYIHPLTGDTIRQVNEIRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  IK EL++RL +LE  G+LLEAQRL  R  YDLEM+E  G C 
Sbjct: 267 PATHYVAGPERMEKAVADIKAELEVRLADLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM+ GD  RK  L E+
Sbjct: 327 GIENYSRHIDGRGEGTAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL +EE++  R  T+ +SATPG +E+    G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSAMDNRPLTWEEFDERRGQTVFMSATPGKFEIAAADGEFVEQVIRPTGLVDPKVT 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI     +  R+L+T LTK+MAEDLT+YL E N  VRY+HS++ TL+
Sbjct: 447 VKPTKGQIDDLIHEIRQRTDKDERVLVTTLTKKMAEDLTDYLLE-NGSVRYLHSDIDTLQ 505

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 506 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 565

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738
           NV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +NK+H I+PQ +++KI +++D +    
Sbjct: 566 NVSGEVIMYADKITDSMQYAIEETDRRREKQVAYNKEHGIDPQPLRKKIADILDQVYDNS 625

Query: 739 EDAATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            D A  + S DA  +      S+  K+ +  +  L  QM  AA ++ FE A R+RDEI  
Sbjct: 626 ADGAGPSASGDAAVVAKPDVSSMPAKEVQKLIDDLSAQMAAAARDVKFELAGRLRDEIFE 685

Query: 793 LKSSPYFQGLDDS 805
           LK     +G+ D+
Sbjct: 686 LKKE--LRGIKDA 696


>gi|197302521|ref|ZP_03167576.1| hypothetical protein RUMLAC_01249 [Ruminococcus lactaris ATCC
           29176]
 gi|197298419|gb|EDY32964.1| hypothetical protein RUMLAC_01249 [Ruminococcus lactaris ATCC
           29176]
          Length = 692

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/669 (53%), Positives = 484/669 (72%), Gaps = 8/669 (1%)

Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185
           H+S S   H+     F+++  Y P+GDQP AIA+L+KG     + Q LLGVTGSGKTFTM
Sbjct: 24  HKSSSQGGHA-----FKLKAPYKPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSGKTFTM 78

Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           A VI+ +Q+P +V+A NK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAYVP +DTYI
Sbjct: 79  ANVIQQLQKPTLVIAHNKTLAAQLYGEFKEMFPDNAVEYFVSYYDYYQPEAYVPSSDTYI 138

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
            K+S+IN++ID++R SAT +L+ER D I+V+SVSCIYG+G+   Y  M++ L+ G   ++
Sbjct: 139 AKDSAINDEIDKLRLSATMALMERRDVIIVASVSCIYGLGNPVDYQNMVISLRPGMIKDR 198

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
            E+++ L++ QY R D+   RGTFRV GD +EI P++  D A RV  FG++I+ ISE   
Sbjct: 199 DEVMAKLIEIQYDRNDMDFHRGTFRVRGDVLEIIPAYESDTAIRVEFFGDEIDRISEIDI 258

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           LTG+    ++ I I+  SHYV  R  +  A+  I+EEL+ R+ E ++  +LLEAQR+ +R
Sbjct: 259 LTGEVKDELKHIAIFPASHYVVDRENIKRAVADIEEELEERVKEFKRNDKLLEAQRIAER 318

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
             +D+EML+ TG C  IENYSR+L+G  PG+ P TL +Y P+D ++ +DESH T+PQI G
Sbjct: 319 TNFDIEMLKETGFCSGIENYSRHLSGLKPGQAPYTLIDYFPDDFIMMIDESHKTVPQIGG 378

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MY GD  RK TL +YGFRLPS  DNRPL FEE+       + VSATPG +E++  + +  
Sbjct: 379 MYHGDQSRKQTLVDYGFRLPSAKDNRPLNFEEFESKINQVLFVSATPGQYEMDH-ELLRA 437

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           EQ+IRPTGL+DP VE+R    Q++D+  EIN   ++  ++L+T LTK+MAEDLT+Y+ E 
Sbjct: 438 EQVIRPTGLLDPEVEVRPVEGQIDDLLGEINKEIEKKNKVLVTTLTKKMAEDLTDYMREV 497

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            IRV+Y+HS++ TLER EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFL
Sbjct: 498 GIRVKYLHSDIDTLERTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFL 557

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS+TSLIQTIGRAARN    VI+YADT+T+S+QLAIDET RRRE Q+++NK+H I P+++
Sbjct: 558 RSETSLIQTIGRAARNSEGHVIMYADTMTESMQLAIDETQRRREIQMQYNKEHGITPKTI 617

Query: 726 KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           ++ + ++I   + +  A   + ++    S+S+K+ +  ++ L KQM  AA  LNFE AA 
Sbjct: 618 QKSVRDLIS--ISKKVAAQELKMEKDPESMSRKELEKLVRDLEKQMKKAAAELNFEVAAE 675

Query: 786 IRDEIKRLK 794
           +RD++  LK
Sbjct: 676 LRDKLIDLK 684


>gi|21910532|ref|NP_664800.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS315]
 gi|28895774|ref|NP_802124.1| excinuclease ABC subunit B [Streptococcus pyogenes SSI-1]
 gi|94988747|ref|YP_596848.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS9429]
 gi|94992572|ref|YP_600671.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS2096]
 gi|25453316|sp|Q8K743|UVRB_STRP3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189038000|sp|Q1JBD1|UVRB_STRPB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189038001|sp|Q1JLB5|UVRB_STRPC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|21904732|gb|AAM79603.1| putative excinuclease ABC (subunit B) [Streptococcus pyogenes
           MGAS315]
 gi|28811023|dbj|BAC63957.1| putative excinuclease ABC subunit B [Streptococcus pyogenes SSI-1]
 gi|94542255|gb|ABF32304.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS9429]
 gi|94546080|gb|ABF36127.1| Excinuclease ABC subunit B [Streptococcus pyogenes MGAS2096]
          Length = 663

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/657 (54%), Positives = 473/657 (71%), Gaps = 9/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + +  LL+ LV  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTG+ I  V+ + ++
Sbjct: 190 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVDHLVLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML   G   
Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 310 GVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+ Q   II EQIIRPTGL+DP ++
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGEYEMSQTNTII-EQIIRPTGLLDPEID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  Q++D+  EIN    +  R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I  +I       
Sbjct: 549 NVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI----- 603

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + T++  I  +++   S+S+ + K  + +L+KQM  AA+ L+FE AA++RD I  LK
Sbjct: 604 SKTSHNDISKEEMDYESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660


>gi|283850421|ref|ZP_06367710.1| excinuclease ABC, B subunit [Desulfovibrio sp. FW1012B]
 gi|283574447|gb|EFC22418.1| excinuclease ABC, B subunit [Desulfovibrio sp. FW1012B]
          Length = 671

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/664 (52%), Positives = 468/664 (70%), Gaps = 8/664 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ++++Y P GDQP AI  L   +      Q+LLG TG+GKTFTMA+V+  + RPA+V+
Sbjct: 2   LFQLESEYTPQGDQPGAIDALAANLDQGVPSQVLLGATGTGKTFTMAQVVARLNRPALVI 61

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLYSEFK  FP+NAVEYFVSYYDYYQPEAY+PRTDTYIEK++SIN+ ID++R
Sbjct: 62  APNKTLAAQLYSEFKGLFPNNAVEYFVSYYDYYQPEAYLPRTDTYIEKDASINDDIDKLR 121

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT SLL R D ++V+SVSCIYG+GS + Y +M++ L +G+    + +L  LV+ QY+R
Sbjct: 122 HAATHSLLTRKDVLIVASVSCIYGLGSRDYYERMVLTLTVGEKTGMEAVLGRLVEIQYER 181

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RG FRV GD IE+ P++  D A R+  FG+++E I E  PLTG+ + +++   +
Sbjct: 182 NDYDFHRGVFRVRGDVIELIPAYSRDRALRLEFFGDELESILETDPLTGEVLGSMQKAIV 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SHYV+ R  LN A+  I+EEL++RL EL     LL AQRLE R   DLEM+E  G C
Sbjct: 242 FPASHYVSDRTNLNRAVSDIREELRLRLTELRGANDLLAAQRLEMRTMQDLEMIEELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L GR  GEPP TL +Y PED +LFVDESH+T+PQI GM+ GD  RK TL +
Sbjct: 302 NGIENYSRHLDGRKAGEPPYTLLDYFPEDFILFVDESHITVPQIGGMFAGDRSRKQTLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL FEE+       + VSATPG WE+ + +G++VEQIIRPTGL+DP V
Sbjct: 362 FGFRLPSALDNRPLNFEEFLGRIGQAVYVSATPGDWEVNRSEGVVVEQIIRPTGLLDPLV 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + QV+D+  E      QG R+L+T LTKRMAE+L EY     +  RY+HS+++TL
Sbjct: 422 EVRPTKGQVDDLMAECRARVAQGERVLVTTLTKRMAEELNEYFNSMGVPSRYLHSDIETL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+ II+ LR G+F VLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT GRA+
Sbjct: 482 ERVAIIKALRQGEFSVLVGINLLREGLDIPEVSLVAILDADKEGFLRSVRSLIQTFGRAS 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  +VILYADT+T+S++ A+DET RRRE+Q   N++  + P+++ + +  V+D +  +
Sbjct: 542 RNVRGRVILYADTVTRSMRAAMDETARRRERQEASNRETGMTPRTIVKAMDSVLDSLYGQ 601

Query: 740 DAAT---TNISIDAQQ-----LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            A     T +    ++       +S K  +  ++ L ++M  AA  L FE+AA +RD + 
Sbjct: 602 GAGPAGETGVRTGVREEVTAYGDMSPKALEKKIRMLEREMREAAKALEFEKAAELRDRVA 661

Query: 792 RLKS 795
            L++
Sbjct: 662 ALRA 665


>gi|94990640|ref|YP_598740.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS10270]
 gi|189038002|sp|Q1JGE8|UVRB_STRPD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|94544148|gb|ABF34196.1| Excinuclease ABC subunit B [Streptococcus pyogenes MGAS10270]
          Length = 663

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/657 (54%), Positives = 473/657 (71%), Gaps = 9/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + +  LL+ LV  Q++R 
Sbjct: 130 SATASLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTG+ I  V+ + ++
Sbjct: 190 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVDHLVLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML   G   
Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 310 GVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+ Q   II EQIIRPTGL+DP ++
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGEYEMSQTNTII-EQIIRPTGLLDPEID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  Q++D+  EIN    +  R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I  +I       
Sbjct: 549 NVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI----- 603

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + T++  I  +++   S+S+ + K  + +L+KQM  AA+ L+FE AA++RD I  LK
Sbjct: 604 SKTSHNDISKEEMDYESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660


>gi|196249375|ref|ZP_03148073.1| excinuclease ABC, B subunit [Geobacillus sp. G11MC16]
 gi|196211132|gb|EDY05893.1| excinuclease ABC, B subunit [Geobacillus sp. G11MC16]
          Length = 659

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/657 (55%), Positives = 473/657 (71%), Gaps = 6/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P GDQP AI +L+ G+    K Q LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 5   FQLVSSYQPQGDQPQAIEKLVDGLKRGVKHQTLLGATGTGKTFTISNVIAKVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNTLLRRLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIF +  ++   RV  FG++I+ I E   LTG+ +   E + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFQASRDEHCIRVEFFGDEIDRIREVDALTGEVLGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I++EL+ RL EL ++G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKLAIANIEKELEERLAELREQGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIIDESHVTLPQLRGMYNGDRARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELE   G +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLTFDEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+   ++  R L+T LTK+MAEDLT+YL E   +V Y+HSE+KTLE
Sbjct: 424 VRPIAGQIDDLISEIHERVERNERTLVTTLTKKMAEDLTDYLKEAGFKVAYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTITKS+++AI ET RRR  Q E+NKKH I P+++++ I +VI       
Sbjct: 544 NANGHVIMYADTITKSMEIAIQETKRRRTIQEEYNKKHGIVPRTIQKDIRDVIRATY--- 600

Query: 741 AATTNISIDAQ--QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA    + +A+    +++K++ +  ++ L  +M  AA  L+FE AA++RD I  LK+
Sbjct: 601 AAEETETYEAKPTAANMTKQEREELIRQLEAEMKEAAKALDFERAAQLRDVIFELKA 657


>gi|256788422|ref|ZP_05526853.1| excinuclease ABC subunit B [Streptomyces lividans TK24]
 gi|289772313|ref|ZP_06531691.1| excinuclease ABC, B subunit [Streptomyces lividans TK24]
 gi|289702512|gb|EFD69941.1| excinuclease ABC, B subunit [Streptomyces lividans TK24]
          Length = 712

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/699 (51%), Positives = 488/699 (69%), Gaps = 37/699 (5%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++   + +  F++ + Y PSGDQP AIA+L + + + EK  +LLG TG+GK+ T A +IE
Sbjct: 4   VSQIERTVAPFEVVSPYQPSGDQPTAIAELARRVQAGEKDVVLLGATGTGKSATTAWMIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 64  KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +V L++G+  ++ ELL 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVPLRVGEEHDRDELLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +P+TG+ 
Sbjct: 184 RFVDIQYTRNDMAFARGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPVTGEI 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I + + + ++  SHYV     L  A+  I++EL  RL ELEK+G+LLEAQRL  R TYD+
Sbjct: 243 ISDDQQLYVFPASHYVAGPERLERAVNDIEKELAERLTELEKQGKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML   GSC  +ENYS +  GR+PG PP TL +Y P+D LL +DESHVT+PQI  MY GD
Sbjct: 303 EMLRQIGSCSGVENYSMHFDGRSPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG++EL +  G  VEQIIR
Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYLSATPGAYELSRSDG-AVEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+VR
Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRRRTEKDERVLVTTLTKKMAEDLTDYFVELGIQVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS
Sbjct: 482 YLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+  NK + ++PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQVAFNKANGVDPQPLRKKIN 601

Query: 731 EVIDPILLEDAATTNI-------------------SIDAQQLSLSK-KKGKA-------- 762
           +++  I  ED  T  +                   ++  Q+   +K  +G+A        
Sbjct: 602 DIVAQIAREDVDTEQLLGSGYRQTKEGKGAKAPVPALGGQKTGGAKAARGRAKETAVTDR 661

Query: 763 -------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   ++ L  +M  AA +L FE AAR+RDE+  +K
Sbjct: 662 PAAELAEQIEDLTTRMRAAAADLQFEIAARLRDEVSEMK 700


>gi|160947208|ref|ZP_02094375.1| hypothetical protein PEPMIC_01141 [Parvimonas micra ATCC 33270]
 gi|158446342|gb|EDP23337.1| hypothetical protein PEPMIC_01141 [Parvimonas micra ATCC 33270]
          Length = 657

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/667 (54%), Positives = 474/667 (71%), Gaps = 17/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + P+GDQP AI ++   I    K  +L GVTGSGKTFTMA +IE +Q+P +V+A
Sbjct: 3   FVLNSKFKPTGDQPEAIEKISDSIKKGNKEIILKGVTGSGKTFTMANIIEKVQKPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL SEFK FFP+NAVE+FVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 63  HNKTLAYQLASEFKEFFPNNAVEFFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G    Y  ++V L+ G   ++ E++  LV  QY R 
Sbjct: 123 SATMSLFERRDVIIVASVSCIYGLGDPIDYENLVVSLRPGMIKDRDEVIRKLVDIQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  IRGTFRV GDS+EIFP    + + RV  FG++I++ISE   LTG  I   E + IY
Sbjct: 183 DINFIRGTFRVRGDSLEIFPVSSSENSIRVEFFGDEIDKISEIDALTGNIIGTREHVAIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T    +  A+  I +EL+ RL+ L +E +L+EAQRLEQR  YDLEML+  G C 
Sbjct: 243 PASHFATSSEKIERAIGTISKELEERLLVLNQENKLVEAQRLEQRTKYDLEMLQEIGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS +L+GR  G  P TL +Y P+D L+ VDESHVT+PQI  MY GD  RK  L +Y
Sbjct: 303 GVENYSAHLSGRERGSRPYTLIDYFPDDFLIIVDESHVTVPQIGAMYEGDRSRKQNLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE----LEQCQGIIVEQIIRPTGLVD 556
           GFRLPS +DNRPL+F E+  +    + VSATPG +E    LE+     VEQIIRPTGL+D
Sbjct: 363 GFRLPSALDNRPLKFTEFESMVNQILYVSATPGKYEKSHNLEE-----VEQIIRPTGLLD 417

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R    Q++D+  E+N   ++G R+L+T LTK+MAE+LT+YL    I+  Y+HS++
Sbjct: 418 PLIEVRKTEGQIDDIIGEVNSVIKKGERVLITTLTKKMAENLTDYLKNVGIKTTYLHSDI 477

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLR+GKFDVLVGINLLREGLD+PE  +V I+DADKEGFLRS+TS+IQTIG
Sbjct: 478 DTIERMEIIRDLRVGKFDVLVGINLLREGLDLPEVSMVIIMDADKEGFLRSETSMIQTIG 537

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN +VI+YAD ITKS+ +AI ET RRRE Q ++N +HNI P+SVK+ I E+I   
Sbjct: 538 RAARNVNGRVIMYADRITKSMDVAIKETNRRREIQNKYNIEHNITPKSVKKDIREIIQAT 597

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                A  N+    + + +  K  ++ ++ L+ +M  AAD+L+FE AA IRDEIKRLK  
Sbjct: 598 ---KVAEDNVDYKTEDVEI--KDYESFIEDLKNEMLSAADSLDFERAASIRDEIKRLKE- 651

Query: 797 PYFQGLD 803
               GLD
Sbjct: 652 --MWGLD 656


>gi|149181818|ref|ZP_01860308.1| excinuclease ABC subunit B [Bacillus sp. SG-1]
 gi|148850457|gb|EDL64617.1| excinuclease ABC subunit B [Bacillus sp. SG-1]
          Length = 660

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 471/655 (71%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P GDQPAAI ++ +GI   ++ Q LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 5   FQLHSKYQPRGDQPAAIKEITQGIRDGKRHQTLLGATGTGKTFTVSNVIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y  ++V L++G  +E+ +LL  LV  QY R 
Sbjct: 125 SATSSLFERKDVIIIASVSCIYGLGSPEEYRDLVVSLRVGMEIERNQLLRKLVDVQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   R+  FG++I+ I E   LTG+ I   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASRDEHCMRIEFFGDEIDRIREVDSLTGEIIGERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I++EL+ +L  + +E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRVAIGNIEQELEEQLKVMREENKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPSGSTPYTLLDYFPEDFLIVIDESHVTLPQIRGMFNGDQARKKVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+FEE+       + VSATPG +E E    +I +QIIRPTGL+DP ++
Sbjct: 365 GFRLPSAMDNRPLKFEEFEQKANQLVYVSATPGPYEGEHSPEMI-QQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EIN   ++  R+L+T LTK+M+EDL+ YL E  I+V+Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLIGEINERVEKNERVLVTTLTKKMSEDLSAYLKEIGIKVQYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+GK+DVL+GINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRMGKYDVLIGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YAD +T S+Q A+DET+RRRE Q+E+N+KH I PQ++++ I  +I      +
Sbjct: 544 NANGHVIMYADKLTDSMQKALDETSRRREIQIEYNEKHGITPQTIQKNIPNLIRATHAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T       +   L+K + +  + SL  +M  AA  L+FE AA++RD I  LK+
Sbjct: 604 DQTEYEGAQKKVTKLTKPEREKLIASLEGEMKEAARALDFERAAQLRDTILELKA 658


>gi|146296990|ref|YP_001180761.1| excinuclease ABC subunit B [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|189037952|sp|A4XKY5|UVRB_CALS8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|145410566|gb|ABP67570.1| Excinuclease ABC subunit B [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 661

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/656 (57%), Positives = 483/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+GDQP AI  L +GI   EK Q LLGVTGSGKTFTMAKVIE +QRP +V+A
Sbjct: 4   FKVVSDFKPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSIN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +GS E Y  + + L+ G   ++ E++  L++ QY+R 
Sbjct: 124 SATSALFERRDVIIVASVSCIYSLGSPEDYLNLTLSLRPGMIKDRDEVIRELIRMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A RV  FG++IE I+EF  LTG+ I     + I+
Sbjct: 184 DIDFRRGRFRVRGDVLEIFPASNTDRAIRVEFFGDEIERITEFDVLTGEVIGRRNHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    L  A+K I+EEL+ RL EL   G+L+EAQRLEQR  YD+EML+  G C+
Sbjct: 244 PASHYVTTSEKLKRAIKSIEEELEQRLQELRSMGKLVEAQRLEQRTRYDIEMLQEMGFCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PG PP TL +Y P+D ++F+DESHVTIPQ+  MY GD  RK  L EY
Sbjct: 304 GIENYSRHLTGRPPGSPPYTLLDYFPKDFIMFIDESHVTIPQVRAMYNGDKARKDALVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I VSATPG +EL++    +VEQIIRPTGLVDP +E
Sbjct: 364 GFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYELKKSSR-VVEQIIRPTGLVDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +   + Q++ +  EI    ++  R+L+T LTK+MAE LTEYL +  IRVRYMHS++ T+E
Sbjct: 423 VHPVKGQIDHLIGEIRKRVEKNQRVLITTLTKKMAESLTEYLKDVGIRVRYMHSDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ KVI+YAD ITK++Q AIDET RRR+ Q+E+N+KH I PQ+V++ I ++I+  +   
Sbjct: 543 NVDGKVIMYADRITKAMQKAIDETNRRRKIQIEYNQKHGIVPQTVRKGIRQIIEATISVA 602

Query: 741 AATTNISIDAQQL--SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                     + +  ++SK++ + ++K L +QM   A  L FE+AA+IRD+I  LK
Sbjct: 603 EEEEKYESIEKDIVQNMSKQEIEEYIKELEQQMKRFAIELEFEKAAKIRDKIFELK 658


>gi|256394788|ref|YP_003116352.1| excinuclease ABC subunit B [Catenulispora acidiphila DSM 44928]
 gi|256361014|gb|ACU74511.1| excinuclease ABC, B subunit [Catenulispora acidiphila DSM 44928]
          Length = 703

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/687 (52%), Positives = 483/687 (70%), Gaps = 28/687 (4%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           ++ +   ++ +DY P+GDQPAAIA+L + I + E+  +LLG TG+GK+ T A +IE +QR
Sbjct: 8   TRTVAPIEVVSDYQPAGDQPAAIAELTRRIEAGEQNVVLLGATGTGKSATTAWLIEKLQR 67

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSINE+
Sbjct: 68  PTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEE 127

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++R+RHS T SLL R D +VVS+VSCIYG+G+ E Y +  VQ+++G+  ++ ++L   V 
Sbjct: 128 VERLRHSTTNSLLTRRDVVVVSTVSCIYGLGTPEEYLKSSVQIRVGEEHDRDKMLRRFVD 187

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D+   RGTFRV GD++EIFP + E+   R+ MFG+++E +   +P+TG+ +   
Sbjct: 188 MQYARNDLAFTRGTFRVRGDTVEIFPVY-EEHPVRIEMFGDEVERLMTLHPVTGEILTVD 246

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           E ++++  +HYV     +  A+  I+ EL  RL ELEK+G+LLEAQRL  R TYDLEM+ 
Sbjct: 247 EELRVFPATHYVAGSDRMERALGGIETELADRLAELEKQGKLLEAQRLRMRTTYDLEMMR 306

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G    IENYSR++ GR PG PP TL ++ PED LL +DESHVT+PQI  M+ GD  RK
Sbjct: 307 QVGFTSGIENYSRHIDGREPGSPPSTLIDFFPEDFLLVIDESHVTVPQIGAMHEGDASRK 366

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL----EQCQGIIVEQIIR 550
            TL E+GFRLPS +DNRPLR+EE+      T+ +SATPG +EL    E+     VEQIIR
Sbjct: 367 RTLVEHGFRLPSAIDNRPLRWEEFEERVGQTVYLSATPGPYELGKQGEETSKSPVEQIIR 426

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++    Q++D+  E+   A++  R L+T LTK+M+EDLT+YL ER +R R
Sbjct: 427 PTGLVDPQVVLKPTHGQIDDLVAEVQARAERNERSLVTTLTKKMSEDLTDYLLERGVRTR 486

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSEV TL R+E++R+LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  S
Sbjct: 487 YLHSEVDTLRRVELLRELRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGRS 546

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YADTIT S++LAIDET RRR+KQ+ +N+ + ++PQ ++++I 
Sbjct: 547 LIQTIGRAARNVSGEVHMYADTITPSMKLAIDETNRRRDKQIAYNEANGVDPQPLRKRIA 606

Query: 731 EVIDPILLEDAATTN-ISIDAQQLSLSK-------KKGKAH---------------LKSL 767
           ++ D +  EDA T   +    +Q S  K        KG                  ++ L
Sbjct: 607 DITDLLAREDADTAELLGGSGRQQSRGKAPVPGVASKGTMRSLDVAGKPAEELLGLIEDL 666

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLK 794
            +QMH AA  L FE AAR RDEI  LK
Sbjct: 667 SQQMHAAAAELQFELAARFRDEIGELK 693


>gi|91203251|emb|CAJ72890.1| strongly similar to UvrABC system protein B (excinuclease ABC
           subunit B) [Candidatus Kuenenia stuttgartiensis]
          Length = 655

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/656 (53%), Positives = 467/656 (71%), Gaps = 5/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P GDQP AI +L++        Q LLGVTGSGKTFTMA VI A+ +P +VM 
Sbjct: 4   FELISPFEPEGDQPEAIRKLVENYRKNVTFQTLLGVTGSGKTFTMANVIAALGKPTLVMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK+FFP NAV YFVSYYDYYQPEAY+P+ D YIEKE++IN++IDR+R 
Sbjct: 64  HNKTLAAQLYSEFKDFFPKNAVGYFVSYYDYYQPEAYIPQRDIYIEKEATINQEIDRLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT  L+ R D I+V+SVSCIYG+GS   Y +M + L  GD VE+  +L  L+  QY+R 
Sbjct: 124 AATSVLMSRKDVIIVASVSCIYGLGSPAEYQEMYLHLSKGDEVERDTVLKKLISIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD IE+FP++ E+ A+RV +FG+++++IS   PLTG  ++ ++ + +Y
Sbjct: 184 DSHFRRGTFRVRGDVIEVFPAY-EEFAYRVELFGDEVDKISMIDPLTGNTLQKIKEVSVY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V P   +   ++ I  EL  RL +L    +LLEAQRLE R  YD+EML   G C 
Sbjct: 243 PAKHFVMPEEKIERVVQSITAELNDRLKDLRSRDKLLEAQRLEARTRYDIEMLLEIGYCH 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++GR PGEPP TLF+Y P+D  L VDESHV+ PQI+GMY GD  RK TL EY
Sbjct: 303 GIENYSRHISGRAPGEPPYTLFDYFPKDFFLIVDESHVSTPQIAGMYHGDRARKETLVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+EW       + VSATPG +EL++ Q  IVEQIIRPTGLVDP + 
Sbjct: 363 GFRLPSALDNRPLRFDEWESRIKQILFVSATPGPYELKKSQNNIVEQIIRPTGLVDPIIY 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ A+TQV D+  EI     +  R L+T LTKR+AEDL+ YL E  I+  Y+HSE+  +E
Sbjct: 423 VKPAKTQVNDLITEIKKRTLRKERTLVTTLTKRLAEDLSGYLKEEGIKCMYLHSEINAIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ I+R+LR+G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGR AR
Sbjct: 483 RVTILRELRMGTFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRTAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN++VILY D ITKS++ AIDET RRR  Q  +NK+HNI P +++++I + I+  +   
Sbjct: 543 NVNAEVILYGDEITKSMRRAIDETNRRRAIQSAYNKEHNITPATIQKEIKKGIESYI--- 599

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            ++  I  +A   S  +   + +L  L  +M  AA+ L FE AA +RD+I++LK S
Sbjct: 600 -SSHKIVYEAVAESEEEYITQEYLNELEAEMLKAAEELAFERAAELRDKIQQLKKS 654


>gi|166366874|ref|YP_001659147.1| excinuclease ABC subunit B [Microcystis aeruginosa NIES-843]
 gi|189037983|sp|B0JR86|UVRB_MICAN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|166089247|dbj|BAG03955.1| excinuclease ABC subunit B [Microcystis aeruginosa NIES-843]
          Length = 667

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/667 (54%), Positives = 470/667 (70%), Gaps = 18/667 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T FQ+Q  + P+GDQPAAI QL+  + ++ + Q LLG TG+GKTFT+A VIE + RP +
Sbjct: 1   MTAFQLQAPFQPTGDQPAAIDQLVDSLQNQHRFQTLLGATGTGKTFTIAAVIEKIGRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK SSIN++ID 
Sbjct: 61  VLAHNKTLAAQLCNELRQFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKSSSINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  + L +G   +Q++LL +LV  QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGMPAEYLKAAISLTVGQEFDQRQLLRALVSVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RG FR+ GD +EI P++ ED   ++  FG++IE I    PLTG+ ++ +E I
Sbjct: 181 NRNDLELTRGRFRLKGDILEIVPAY-EDRVIKIDFFGDEIESIRYLDPLTGEVLQKLERI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP   L  A + IK EL  RL+ELEK G+LLEAQRL+QR  YDLEML+  G
Sbjct: 240 SIYPARHFVTPEERLEVACRDIKTELDNRLLELEKAGKLLEAQRLDQRTRYDLEMLQEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  GEPP  L +Y PED LL VDESHV++PQI GMY GD  RK  L
Sbjct: 300 YCNGVENYSRHLAGRLAGEPPECLVDYFPEDWLLVVDESHVSVPQIRGMYNGDQSRKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+       I VSATPG WELEQ +  IVEQIIRPTG++DP
Sbjct: 360 IDHGFRLPSAADNRPLKSEEFWQKVNQCIFVSATPGDWELEQSENRIVEQIIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    QV+D+  EI    Q   R+L+T LTKRMAEDLTEYL ER I+VRY+HSE++
Sbjct: 420 EIFVRPTEGQVDDLLGEIKERVQLNERVLITTLTKRMAEDLTEYLQERGIKVRYLHSEIQ 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           +++RIEII+DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR+  SLIQTIGR
Sbjct: 480 SIQRIEIIQDLREGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRATRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR++  + ILY D +T S+  AI+ET RRR  Q E+N+KH I PQ + ++    I    
Sbjct: 540 AARHIRGQAILYGDNLTDSMINAIEETKRRRAIQQEYNQKHGIIPQPIVKRSSNSI---- 595

Query: 738 LEDAATTNIS--IDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
               A  +IS  +++QQL         LS ++    ++ L  QM  AA NL FE AA+ R
Sbjct: 596 ---LAFLDISRRLNSQQLEQVCENIEELSLEQIPELIQQLEAQMKEAAKNLEFESAAKYR 652

Query: 788 DEIKRLK 794
           D IK+L+
Sbjct: 653 DRIKQLR 659


>gi|241889975|ref|ZP_04777273.1| excinuclease ABC subunit B [Gemella haemolysans ATCC 10379]
 gi|241863597|gb|EER67981.1| excinuclease ABC subunit B [Gemella haemolysans ATCC 10379]
          Length = 666

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/662 (54%), Positives = 466/662 (70%), Gaps = 18/662 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q+ Y P GDQ  AIA+L +G+++ EK Q LLG TG+GKTFT+A +++ + +P +V+A
Sbjct: 10  FDLQSKYDPKGDQINAIAELTEGLNNGEKYQTLLGATGTGKTFTIANIVKNVGKPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY+E K FFP+N VEYFVSYYDY+QPEAYVP TDTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYNELKEFFPNNRVEYFVSYYDYFQPEAYVPSTDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL +R+D I+VSSVSCIYG+GS E YS +++ L++GD + + +++  L+  QY R 
Sbjct: 130 SATSSLFDRDDVIIVSSVSCIYGLGSPEEYSSLVLSLRVGDEISRNKIMEKLISIQYMRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD IEIFP+   + + R+ MFG++I+ I E  PLTG+ +  +E I IY
Sbjct: 190 DIEFTRGNFRVRGDVIEIFPASRSENSVRIEMFGDEIDRIREINPLTGEVLSELEHIAIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+V        A+K I+ EL+ RL  L  E +LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 250 PASHFVAGDEKTKEAIKRIRAELEERLKVLNMENKLLEAQRLEQRTNYDLEMMEEMGFCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R PG  P TL +Y P+D LL VDESHVT+PQ+ GM+ GD  RK  L +Y
Sbjct: 310 GIENYSLHLTLREPGSTPYTLLDYFPDDWLLVVDESHVTLPQVRGMFNGDRARKQVLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL FEE+       I VSATPG +ELE     I EQIIRPTGL+DP ++
Sbjct: 370 GFRLPTALDNRPLNFEEFEKKLNQAIFVSATPGDFELENSTK-ITEQIIRPTGLLDPIID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV D+  E      +G R+L+T LTK+MAE LT YL E  ++V Y+HS++KTLE
Sbjct: 429 IRPVSDQVFDITKEAEKIIAKGERVLITTLTKKMAESLTAYLKENGLKVEYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLGKFD+L+GINLLREGLDIPE  LVAILDADKEGFLR   +L+QTIGRAAR
Sbjct: 489 RTEIIRNLRLGKFDILIGINLLREGLDIPEVSLVAILDADKEGFLRGDKALLQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733
           N N +VI+YAD IT+S++ AIDET RRRE Q+ +N++H I PQ++ + I + I       
Sbjct: 549 NANGRVIMYADNITRSMRKAIDETNRRREIQMAYNEEHGITPQTIIKDIRDSISAKKEVI 608

Query: 734 -DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            D  +LE   TTNI+ D  +          HL  L +QM  AA+   FE+AA++RD I  
Sbjct: 609 NDEEILELEETTNINDDNIE---------EHLAELEQQMFTAAEKFEFEQAAKLRDTIAE 659

Query: 793 LK 794
           LK
Sbjct: 660 LK 661


>gi|332670360|ref|YP_004453368.1| excinuclease ABC subunit B [Cellulomonas fimi ATCC 484]
 gi|332339398|gb|AEE45981.1| excinuclease ABC, B subunit [Cellulomonas fimi ATCC 484]
          Length = 701

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/689 (52%), Positives = 483/689 (70%), Gaps = 27/689 (3%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           +    + +  FQ+ +++ PSGDQPAAIA+L   I++ EK  +LLG TG+GK+ T A +IE
Sbjct: 4   VTELQRTVAPFQVVSEFTPSGDQPAAIAELASRINAGEKDVVLLGATGTGKSATTAWLIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SS
Sbjct: 64  QVQRPTLVMAPNKTLAAQLATEFRELLPNNAVEYFVSYYDYYQPEAYIVQTDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN++++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V L +G  +++ +LL 
Sbjct: 124 INDEVERLRHSATSSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVTLDVGQQIDRDQLLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V+ QY R D+   RGTFRV GD++EI P + E++A R+  FG++IE I+  +PLTG  
Sbjct: 184 RFVQMQYTRNDLAFTRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIEAIATLHPLTGDV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +R+ + + I+  +HYV     +  A+  I+ EL+ RL ELE + +LLEAQRL  R TYD+
Sbjct: 243 VRSEDQMMIFPATHYVAGPERMERAIAGIELELEDRLAELESQNKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   GSC  IENYSR++ GR  G  P TL ++ PED LL +DESHVT+PQI  M+ GD
Sbjct: 303 EMMRQIGSCSGIENYSRHIDGRTAGSAPNTLLDFFPEDFLLVIDESHVTVPQIGAMFEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK  L E+GFRLPS  DNRPLR+EE+      T+ +SATPG +EL    G+ VEQIIR
Sbjct: 363 MSRKRALVEHGFRLPSATDNRPLRWEEFVERIGQTVYLSATPGDYELSMADGV-VEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++  + Q++D+  EI+   ++  R+L+T LTK+MAEDLT+Y  E+ +RVR
Sbjct: 422 PTGLVDPEVVVKPTKGQIDDLLGEIHDRVERDERVLVTTLTKKMAEDLTDYFLEKGVRVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSEV TL R+E++R+LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  S
Sbjct: 482 YLHSEVDTLRRVELLRELRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGKS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT ++QLAI+ET+RRREKQ+ +N +  I+PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMQLAIEETSRRREKQIAYNTERGIDPQPLRKKIG 601

Query: 731 EVIDPILLEDAATTNISIDA-QQLSLSK-------KKGKAH-----------------LK 765
           ++ D +  EDA T  +   A +Q S  K        KG                    ++
Sbjct: 602 DITDLLAREDADTAELLGGAGRQASRGKAPVPGFGSKGAPRDERTRLTGAAAGELAGLIQ 661

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            L  QMH AA  L FE AAR+RDEI  LK
Sbjct: 662 ELTDQMHAAAGELQFELAARLRDEISGLK 690


>gi|290961294|ref|YP_003492476.1| ABC excision nuclease subunit B [Streptomyces scabiei 87.22]
 gi|260650820|emb|CBG73937.1| ABC excision nuclease subunit B [Streptomyces scabiei 87.22]
          Length = 709

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/696 (51%), Positives = 479/696 (68%), Gaps = 34/696 (4%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++   + +   ++ + Y PSGDQP AIA+L + I + EK  +LLG TG+GK+ T A +IE
Sbjct: 4   VSKIERTVAPLEVVSSYQPSGDQPTAIAELARRIGAGEKDVVLLGATGTGKSATTAWMIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 64  KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V L++G+  ++ ELL 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLRVGEEFDRDELLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ 
Sbjct: 184 RFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEI 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I + + + ++  SHYV     L  A   I++EL  RL ELEK+G+LLEAQRL  R TYDL
Sbjct: 243 ISDDQQLYVFPASHYVAGPERLERAANDIEKELGERLAELEKQGKLLEAQRLRMRTTYDL 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML   GSC  +ENYS +  GR PG PP TL +Y P+D LL +DESHVT+PQI  MY GD
Sbjct: 303 EMLRQIGSCSGVENYSMHFDGREPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G  VEQIIR
Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFQERVGQTVYLSATPGQYELSRSDG-HVEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+VR
Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRQRTEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS
Sbjct: 482 YLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT ++  AIDET RRREKQ+ +NK H I+PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADRITPAMAKAIDETNRRREKQVAYNKAHGIDPQPLRKKIN 601

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKA---------------------------- 762
           +++  I  ED  T  +     +     K  KA                            
Sbjct: 602 DIVARIAREDVDTEQLLGTGYRQQKDGKAAKAPVPALKGRAAGAARGAAKDAGPTDRPAA 661

Query: 763 ----HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                ++ + ++M  AA +L FE AAR+RDE+  +K
Sbjct: 662 ELAQQIEEMTQRMRAAAADLQFEIAARLRDEVSEMK 697


>gi|87309481|ref|ZP_01091616.1| excinuclease ABC subunit B [Blastopirellula marina DSM 3645]
 gi|87287789|gb|EAQ79688.1| excinuclease ABC subunit B [Blastopirellula marina DSM 3645]
          Length = 687

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/663 (53%), Positives = 475/663 (71%), Gaps = 18/663 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q  + P+GDQPAAI QL++G+ +  + Q+LLGVTGSGKT+T+A VI+ +QRPA+V++
Sbjct: 3   FELQAPFAPAGDQPAAIEQLVEGLRAERRHQVLLGVTGSGKTYTVANVIQQLQRPALVIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFPHNAV YFVSYYDYYQPEAY+P+ D YIEK++SIN++IDR+R 
Sbjct: 63  HNKTLAAQLYSEFKEFFPHNAVHYFVSYYDYYQPEAYIPQRDIYIEKDASINDEIDRLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           ++T +L+ R D I+V+SVS IYG+GS   Y  M+V +  G  +++ E+L  LV   Y+R 
Sbjct: 123 ASTSALVSRRDVIIVASVSSIYGLGSPSDYKAMMVSIAKGQMIDRDEVLGRLVGILYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R  FRV GD IEI+PS+ E+ A+R+ ++G+++E++S   PLTG+ I   E + IY
Sbjct: 183 DVAFERSKFRVRGDCIEIWPSY-EEFAYRIELWGDEVEQLSIINPLTGEVIAPQEQLYIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V P   +  A+  IK EL  RL ELE  G+LLEAQRL  R  +D+EM++  G C 
Sbjct: 242 PAKHFVLPEERVAKAVVDIKHELAARLQELESAGKLLEAQRLNARTRFDIEMMQEVGFCP 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR PG  P TL+++ P+D LLFVDESHVTI QI  MY GD  RK  L E+
Sbjct: 302 GIENYSRPLSGRPPGSAPSTLYDFFPKDFLLFVDESHVTISQIRAMYHGDRSRKMNLVEH 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP +F+EW  +    + VSATPG +ELE+  G +VEQIIRPTGL+DP VE
Sbjct: 362 GFRLPSALDNRPFKFDEWENIVNQAVFVSATPGDYELEKAGGEVVEQIIRPTGLLDPVVE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ AR QV+ + ++I        R+L+TVLTKR+AEDL  YL E+ I  +++HSE+   E
Sbjct: 422 LQPARGQVQHLLEQIRERVAVKERVLVTVLTKRLAEDLANYLSEQGIACKWLHSELDAFE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++RDLR GKFD LVGINLLREGLD+PE  LV ILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RVELLRDLREGKFDCLVGINLLREGLDLPEVSLVGILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN+KVILYAD +T S+Q AIDET RRR+ Q E+N+KH I P+S+K+ I   I+     D
Sbjct: 542 NVNAKVILYADRMTNSMQAAIDETDRRRKIQQEYNEKHGITPESIKKNIRRGIE----ND 597

Query: 741 A-------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           A       A    + DA+ ++L       ++  L+ +M  AA+NL FE AA IRD I ++
Sbjct: 598 ADAHRTASAAVGKTDDAEYITLE------YISELQTEMLAAAENLEFERAAGIRDRITKM 651

Query: 794 KSS 796
           + S
Sbjct: 652 QDS 654


>gi|108799967|ref|YP_640164.1| excinuclease ABC subunit B [Mycobacterium sp. MCS]
 gi|119869079|ref|YP_939031.1| excinuclease ABC subunit B [Mycobacterium sp. KMS]
 gi|108770386|gb|ABG09108.1| Excinuclease ABC subunit B [Mycobacterium sp. MCS]
 gi|119695168|gb|ABL92241.1| Excinuclease ABC subunit B [Mycobacterium sp. KMS]
          Length = 719

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/690 (52%), Positives = 483/690 (70%), Gaps = 30/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI +L + I + E+  +LLG TG+GK+ T A +IE +QRP ++MA
Sbjct: 28  FEVVSPYQPAGDQPAAIDELERRIRAGERDVVLLGATGTGKSATTAWLIERLQRPTLLMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 88  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ +SY    V+LK+GD V +  LL  LV  QY R 
Sbjct: 148 SATSSLLSRRDVVVVASVSCIYGLGTPQSYMDRSVELKVGDEVPRDALLRLLVDVQYARN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI PS+ E++A R+  FG+++E +   +PLTG  +R V++++++
Sbjct: 208 DMAFTRGTFRVRGDTVEIIPSY-EELAVRIEYFGDEVEALYYMHPLTGDVVRRVDSLRVF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I++EL+ RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 267 PATHYVAGPERMAQAISSIEKELEDRLAELEGQGKLLEAQRLRMRTNYDIEMMRQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG  P TL +Y PED LL +DESHVT+PQI GMY GD  RK  L ++
Sbjct: 327 GIENYSRHIDGRGPGTAPATLIDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVDF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE+      T+ +SATPG +E+ Q  G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSAVDNRPLTWEEFASRIGQTVYLSATPGPYEMSQSGGEFVEQVIRPTGLVDPQVI 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI    +   R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 447 VKPTKGQIDDLIGEIRKRTELDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSEVDTLR 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739
           NV+ +V +YAD IT S++ AIDET RRR KQ+ +N++  I+P+ +++KI +++D +  E 
Sbjct: 567 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEERGIDPKPLRKKIADILDQVYREA 626

Query: 740 -DAATTNISIDAQQLSLSKKK----GKA---------------------HLKSLRKQMHL 773
            D+ T  +    +  S  ++     G+A                      +K L +QM  
Sbjct: 627 DDSETVEVGGSGRNASRGRRAQGEPGRAVSAGIVEGRDTANMPRAELADLIKDLTEQMMT 686

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE AARIRDEI+ LK     +G+D
Sbjct: 687 AARDLQFELAARIRDEIQDLKKE--LRGMD 714


>gi|319939262|ref|ZP_08013625.1| UvrABC system protein B [Streptococcus anginosus 1_2_62CV]
 gi|319811658|gb|EFW07934.1| UvrABC system protein B [Streptococcus anginosus 1_2_62CV]
          Length = 662

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/659 (53%), Positives = 476/659 (72%), Gaps = 12/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI+ + +P +V+A
Sbjct: 10  FKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIQKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDQLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  I+ EL+ +L   E+EG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFMTNDENMEIAIGKIQAELEEQLAFFEREGKLLEAQRLKQRTDYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEREQTDTVI-EQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN  A++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARAEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADTIT S+Q A++ET RRR+ Q+ +N++H I PQ+++++I ++I       
Sbjct: 549 NSEGHVIMYADTITDSMQKAMNETARRRQIQMAYNEEHGIVPQTIQKEIRDLI------- 601

Query: 741 AATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + T     D +++    +L+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 602 SVTKAALPDKEEVVDIENLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|257882916|ref|ZP_05662569.1| excinuclease ABC [Enterococcus faecium 1,231,502]
 gi|294621568|ref|ZP_06700734.1| excinuclease ABC, B subunit [Enterococcus faecium U0317]
 gi|257818574|gb|EEV45902.1| excinuclease ABC [Enterococcus faecium 1,231,502]
 gi|291598873|gb|EFF29924.1| excinuclease ABC, B subunit [Enterococcus faecium U0317]
          Length = 664

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/656 (53%), Positives = 472/656 (71%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL+ G+   +K Q+LLG TG+GKT+T++ +IE + +P +++A
Sbjct: 10  FELVSKYQPAGDQPEAINQLVDGVVGGKKAQILLGATGTGKTYTISNLIEKVNKPTLIIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IV++SVSCI+G+GS   Y + +V ++ G  +++ +L+  LV  Q++R 
Sbjct: 130 SATSSLLERNDVIVIASVSCIFGLGSPFEYQKQVVSIRQGAELDRNQLIRDLVSIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG+++E I E   LTG+ +   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDEVERIREVNALTGEVLGETEHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IKEEL+ RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFVTNDEHMEHAVANIKEELEQRLTVLRNENKLLEAQRLEQRTNYDIEMMLEMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ PED L+  DESHVT+PQI GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRKEGEPPYTLLDFFPEDFLIVADESHVTMPQIRGMYNGDRARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       I VSATPG +E EQ   +I +QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRLEEFEKHVNQIIYVSATPGPYEHEQTDTVI-QQIIRPTGLLDPVIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 429 VRPIMGQIDDLVGEINERVEKDQRVFVTTLTKKMAEDLTDYFKELGIKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 489 RTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD +T S++LA+DET+RRR  Q ++N++H I P+++ ++I ++I  I  E 
Sbjct: 549 NEEGKVIMYADKVTDSMRLAMDETSRRRTIQQKYNEEHGIVPKTIIKEIRDLI-SITKES 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  ++      ++K++    L  L K+M  AA  L+FE AA +RD I  LK+S
Sbjct: 608 EDDTKEAVQVSYEEMTKEEKDTLLMKLEKEMKDAAKALDFETAANVRDMILELKAS 663


>gi|163752020|ref|ZP_02159229.1| excinuclease ABC subunit B [Shewanella benthica KT99]
 gi|161328072|gb|EDP99241.1| excinuclease ABC subunit B [Shewanella benthica KT99]
          Length = 637

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/630 (55%), Positives = 465/630 (73%), Gaps = 6/630 (0%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           LLGVTGSGKTFT+A VI+ + RP I+MAPNK LAAQLY E K FFPHNAVEYFVSYYDYY
Sbjct: 4   LLGVTGSGKTFTIANVIKQIGRPTIIMAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYY 63

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           QPEAYVP T+T+IEK++S+N  I++MR SAT++LLER D ++++SVS IYG+G  +SY +
Sbjct: 64  QPEAYVPSTNTFIEKDASVNAHIEQMRLSATKALLERKDVVLIASVSAIYGLGDPKSYLK 123

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
           M++ L+ GD + Q+++L  L + QY R DI + RGTFRV G+ I+IFP+  +  A RV +
Sbjct: 124 MLLHLRQGDFMGQRDILLRLSELQYTRNDISLERGTFRVRGEVIDIFPADSDKHAIRVEL 183

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           F ++IE +S F PLTG+ I+ +  I +Y  SHYVTPR  +  A + IK+EL  R  +L  
Sbjct: 184 FDDEIERLSMFDPLTGRIIKRIARISVYPKSHYVTPREKIVAATEEIKKELIERKQQLLD 243

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             +L+EAQR+ +R+ YDLEM+   G C  IENYSRYL+GR  G+ PPTL +Y+P+D LL 
Sbjct: 244 NNKLVEAQRISERVQYDLEMMVELGYCSGIENYSRYLSGRATGKGPPTLLDYLPDDGLLI 303

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           +DESHVT+PQI  MY+GD  RK  L EYGFRLPS +DNRPL+FEE+  L P TI VSATP
Sbjct: 304 IDESHVTVPQIGAMYKGDRSRKLNLVEYGFRLPSALDNRPLKFEEFEDLMPQTIFVSATP 363

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
             +E+++C G I EQ++RPTGL+DP VE+R   TQ++D+  +I    +   R+L+T LTK
Sbjct: 364 SQYEIDKCDGEIAEQVVRPTGLLDPEVEVRPVGTQIDDLLSQIGKRIKVNERVLVTTLTK 423

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM+EDL+EYL E  I+VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  
Sbjct: 424 RMSEDLSEYLDEHGIKVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVS 483

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           LV ILDADKEGFLRS+ SLIQT+GRAARN+N KVILYAD ITKS+  A+ ET RRR+ Q 
Sbjct: 484 LVCILDADKEGFLRSERSLIQTMGRAARNINGKVILYADRITKSMAAAMGETDRRRKMQH 543

Query: 713 EHNKKHNINPQSVKEKIMEVI-----DPILLEDAATTNISIDAQQLSLSKKKGKAH-LKS 766
           ++N  + I P  V +KI +V+     D  +L D ++ N++ +  +  +      +H + +
Sbjct: 544 QYNLDNGITPTGVVKKITDVMDVGERDKGILGDYSSLNVAENRAKYVVQDAASISHQIDA 603

Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           L KQMH  A NL FE+AA +RD++ +L+ +
Sbjct: 604 LEKQMHEHAKNLEFEQAAAVRDQVLKLRDA 633


>gi|294791677|ref|ZP_06756825.1| excinuclease ABC subunit B [Veillonella sp. 6_1_27]
 gi|294456907|gb|EFG25269.1| excinuclease ABC subunit B [Veillonella sp. 6_1_27]
          Length = 725

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/685 (53%), Positives = 482/685 (70%), Gaps = 36/685 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P+GDQP AI  L +GI   E  Q+LLG TG+GKTFTMAKVIEA+Q+P +++A
Sbjct: 14  FKVEAPFAPTGDQPTAIQSLTEGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKPTLIIA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++ID++RH
Sbjct: 74  HNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEIDKLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G  E YS +++ L++G +  + E+LS LV  QY R 
Sbjct: 134 SATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQTKSRDEILSKLVDIQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  IRGTFRV GD+I+IFP+   + A RV +FG++I+ + E   LTG+ I   + + +Y
Sbjct: 194 DMNFIRGTFRVQGDTIDIFPAAYSERAIRVELFGDEIDRLVEVDSLTGEVIAERKHVAVY 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +  +N A++ I+ EL  +L +L+   RLLEAQRLEQR  YD+EM++  G C 
Sbjct: 254 PASHYVTTKEKMNIAVERIEAELDEQLAKLKAADRLLEAQRLEQRTRYDIEMMQEMGYCS 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++ R  GE P TL +Y P+D L+ VDESHVT+PQI  MY GD  RK +L EY
Sbjct: 314 GIENYSRHMSERKAGEAPFTLIDYFPDDFLIMVDESHVTMPQIRAMYNGDRARKESLIEY 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       + VSATPG +E+E  +  I EQIIRPTGL+DP +E
Sbjct: 374 GFRLPSALDNRPLQFDEFVERINQIVYVSATPGPYEME-VETNIAEQIIRPTGLLDPSIE 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EI+  A +  R+L+T LTK+MAEDLTE+L E  +RVRY+HS++ T+E
Sbjct: 433 IRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSDIVTIE 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T++IQTIGRAAR
Sbjct: 493 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN  VI+YAD +T S+Q AIDET RRR  Q  +N +HNI P+SV + + E+I+   +E+
Sbjct: 553 NVNGHVIMYADRVTGSMQRAIDETDRRRAVQEAYNIEHNITPKSVSKDVKELIELTKIEE 612

Query: 741 AATTNISIDAQQLSLSKK------KGKAH-------------------------LKSLRK 769
              T    D + LS  K       +G  H                         ++ L +
Sbjct: 613 DMVT----DGKGLSSKKGKQKKSSEGMDHGHESYVQDTSAPKVADITPEELYNKIEELDR 668

Query: 770 QMHLAADNLNFEEAARIRDEIKRLK 794
           QM  AA  L FE AA++RD++  L+
Sbjct: 669 QMKAAAKQLEFETAAKLRDQLGVLR 693


>gi|302023818|ref|ZP_07249029.1| excinuclease ABC subunit B [Streptococcus suis 05HAS68]
          Length = 661

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/659 (53%), Positives = 478/659 (72%), Gaps = 12/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI  L+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEF   FP NAVEYFVSY DYYQPEAYVP +DTYIEK+SS N++ID++RH
Sbjct: 70  HNKTLAGQLYSEFNALFPQNAVEYFVSYSDYYQPEAYVPSSDTYIEKDSSSNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+SLV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGQEISRDQLLNSLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ + +V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGDVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    + TA+  I+ EL+ +L   E EG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMETAIAKIQAELEEQLKIFEAEGKLLEAQRLKQRTDYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ    +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTD-TVVEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T+S++ A++ET RRR+ Q+ +N++H I PQ++K++I ++I       
Sbjct: 549 NSEGHVIMYADKVTESMRKAMEETARRRQIQMAYNEEHGIIPQTIKKEIRDLI------- 601

Query: 741 AATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + T  ++ D +++    +L+K + KA +K L  QM  AA+ L+FE AA+IRD +  LK+
Sbjct: 602 SVTKAVTQDKEEVVDFNALNKDERKAMIKKLEGQMQEAAEVLDFELAAQIRDMVIELKN 660


>gi|260439329|ref|ZP_05793145.1| excinuclease ABC subunit B [Butyrivibrio crossotus DSM 2876]
 gi|292808339|gb|EFF67544.1| excinuclease ABC subunit B [Butyrivibrio crossotus DSM 2876]
          Length = 661

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/656 (54%), Positives = 466/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI +L+KG  + ++ Q LLGVTGSGKTFTMA VIE + RP +V+A
Sbjct: 4   FILHSEYEPTGDQPEAIKELVKGFEAGDQFQTLLGVTGSGKTFTMANVIEKLNRPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 64  HNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y  M+V L+ G   ++ +++  L+  QY R 
Sbjct: 124 SATAALSERRDVIIVASVSCIYGLGSPIDYKSMVVSLRPGMERDRDDIIRQLIDMQYVRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EIFP+  + +A RV  FG++I+ I E   LTG+    ++   I+
Sbjct: 184 DMDFKRGTFRVRGDVLEIFPAASDKIAVRVEFFGDEIDRILEIDTLTGEIKSELKHTAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  L  A + I+ ELK ++   + E +LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 244 PASHYVVPKEKLLIAAENIRAELKEQVDYFKSEDKLLEAQRISERTNFDVEMMLETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR PG  P TL +Y PED L+ VDESH+TIPQI GMY GD  RK TL +Y
Sbjct: 304 GIENYSRHLEGRAPGTMPCTLMDYFPEDFLIIVDESHITIPQIRGMYFGDRSRKTTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATP  +E E      VEQIIRPTGL+DP + 
Sbjct: 364 GFRLPSALDNRPLNFEEFESKINQMMFVSATPSVYEAEHELN-RVEQIIRPTGLLDPEIS 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N       ++L+T LTKRMAEDLT YL E  +RVRY+HS++ TLE
Sbjct: 423 VRPVTGQIDDLLSEVNKETAGKNKVLITTLTKRMAEDLTIYLKENGVRVRYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+R+  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RAEIIRDMRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD +T S++ AIDET RRR+ Q E+N+ H I P ++K+ + ++I      +
Sbjct: 543 NADGRVIMYADNMTDSMRKAIDETERRRKIQQEYNEAHGITPTTIKKAVRDLIAISKAAN 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                I  D +  S+S K+ +  +K L K+MH AA +LNFEEAA IRD+I  ++ +
Sbjct: 603 DKGDKIKKDIE--SMSDKELEKLIKELNKKMHRAAADLNFEEAALIRDQITEIRKT 656


>gi|269956328|ref|YP_003326117.1| excinuclease ABC subunit B [Xylanimonas cellulosilytica DSM 15894]
 gi|269305009|gb|ACZ30559.1| excinuclease ABC, B subunit [Xylanimonas cellulosilytica DSM 15894]
          Length = 701

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/696 (51%), Positives = 484/696 (69%), Gaps = 41/696 (5%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + +  + +  F++ ++Y PSGDQP AIAQL + I + EK  +LLG TG+GK+ T A +IE
Sbjct: 4   VTDLQRTVAPFEVISEYTPSGDQPTAIAQLTERIQAGEKDVVLLGATGTGKSATTAWLIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SS
Sbjct: 64  KLQRPTLVMAPNKTLAAQLATEFRELLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN++++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V+L +GD V++ +LL 
Sbjct: 124 INDEVERLRHSATSSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVRLDVGDVVDRDQLLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V+ QY R D+   RGTFRV GD++EI P + E++A R+  FG++IE I   +PLTG  
Sbjct: 184 RFVQMQYTRNDVAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIEAIQTLHPLTGDV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +R+ +++ ++  +HYV     +  A+  I++EL+ RL  LEK+ +LLEAQRL  R TYD+
Sbjct: 243 VRDEKSVYLFPATHYVAGPERMERAIAGIEKELEERLAVLEKQNKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   GSC  IENYS ++ GR PG PP TL +Y PED LL +DESHVT+PQI  M+ GD
Sbjct: 303 EMMRQIGSCSGIENYSLHIDGREPGTPPNTLLDYFPEDFLLVIDESHVTVPQIGAMFEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK  L E+GFRLPS MDNRPLR+EE+      T+ +SATPG +E     G +VEQIIR
Sbjct: 363 MSRKRALVEHGFRLPSAMDNRPLRWEEFVERIGQTVYLSATPGEYETSLSDG-VVEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E+ I+V+
Sbjct: 422 PTGLVDPEVIVKPTTGQIDDLLHEIRERVERDERVLVTTLTKKMAEDLTDYFLEKGIKVQ 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R+LRLG+FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  S
Sbjct: 482 YLHSDVDTLRRVELLRELRLGQFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSARS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT ++ +A++ETTRRREKQ+ +N  H ++P  +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMAIALEETTRRREKQIAYNTAHGVDPTPLRKKIA 601

Query: 731 EVIDPILLEDAATTNISIDAQQL------SLSKKKGKAHL-------------------- 764
           +V D +  ED       ID QQL        ++++ KA L                    
Sbjct: 602 DVTDMLARED-------IDTQQLLAGGYRKPAERRAKAPLPGSPKEGATTGNRLAGVAAG 654

Query: 765 ------KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 + L  QMH AA  L FE AAR+RDEI  LK
Sbjct: 655 ELAELIQELSDQMHAAAAELQFEVAARLRDEISGLK 690


>gi|32141151|ref|NP_733553.1| excinuclease ABC subunit B [Streptomyces coelicolor A3(2)]
 gi|81842342|sp|Q8CK11|UVRB_STRCO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|24419016|emb|CAD55287.1| ABC excision nuclease subunit B [Streptomyces coelicolor A3(2)]
          Length = 712

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/699 (51%), Positives = 487/699 (69%), Gaps = 37/699 (5%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++   + +  F++ + Y PSGDQP AIA+L + + + EK  +LLG TG+GK+ T A +IE
Sbjct: 4   VSQIERTVAPFEVVSPYQPSGDQPTAIAELARRVQAGEKDVVLLGATGTGKSATTAWMIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 64  KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +V L++G+  ++ ELL 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVPLRVGEEHDRDELLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +P+TG+ 
Sbjct: 184 RFVDIQYTRNDMAFARGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPVTGEI 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I   + + ++  SHYV     L  A+  I++EL  RL ELEK+G+LLEAQRL  R TYD+
Sbjct: 243 ISEDQQLYVFPASHYVAGPERLERAVNDIEKELAERLTELEKQGKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML   GSC  +ENYS +  GR+PG PP TL +Y P+D LL +DESHVT+PQI  MY GD
Sbjct: 303 EMLRQIGSCSGVENYSMHFDGRSPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG++EL +  G  VEQIIR
Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYLSATPGAYELSRSDG-AVEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+VR
Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRRRTEKDERVLVTTLTKKMAEDLTDYFVELGIQVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS
Sbjct: 482 YLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+  NK + ++PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQVAFNKANGVDPQPLRKKIN 601

Query: 731 EVIDPILLEDAATTNI-------------------SIDAQQLSLSK-KKGKA-------- 762
           +++  I  ED  T  +                   ++  Q+   +K  +G+A        
Sbjct: 602 DIVAQIAREDVDTEQLLGSGYRQTKEGKGAKAPVPALGGQKTGGAKAARGRAKETAVTDR 661

Query: 763 -------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   ++ L  +M  AA +L FE AAR+RDE+  +K
Sbjct: 662 PAAELAEQIEDLTTRMRAAAADLQFEIAARLRDEVSEMK 700


>gi|94968809|ref|YP_590857.1| excinuclease ABC subunit B [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550859|gb|ABF40783.1| Excinuclease ABC subunit B [Candidatus Koribacter versatilis
           Ellin345]
          Length = 662

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/662 (53%), Positives = 474/662 (71%), Gaps = 9/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ + Y P GDQ  AI QL  GI   EK Q+LLGVTGSGKTFTMAK+IE + RPA+++A
Sbjct: 3   LKVSSPYKPQGDQARAIEQLTGGIRDGEKHQVLLGVTGSGKTFTMAKIIEQLNRPALILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFKNFFP+NAVEYFVSYYDYYQPEAY+P  D YIEKE+++N+++D++R 
Sbjct: 63  HNKTLAAQLYHEFKNFFPNNAVEYFVSYYDYYQPEAYIPAGDVYIEKEATVNDELDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATRSL ER D I+V+SVSCIYG+GS E+Y  M++ L+ G  +++ ++L  LV+  Y+R 
Sbjct: 123 AATRSLFERRDVIIVASVSCIYGLGSPEAYYGMLLFLEKGQRIKRDDILKKLVEILYERT 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RGTFRV GD IEIFP++ ED A+R+ MFG+++E +S+  PL G   +  + + IY
Sbjct: 183 NEDFRRGTFRVRGDVIEIFPTY-EDTAYRIEMFGDEVESLSQIDPLFGTVKQKYQRLPIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV      N+A+  I EEL     EL+K+GRL+E+QR+ QR  +DLEM++  G C 
Sbjct: 242 PKTHYVMKPERKNSAVTTILEELGWWENELQKQGRLVESQRIHQRTRFDLEMIKEMGYCH 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TGR PGEPPPTL +Y+P + LLF+DESH T+PQ+ GM+ GD  RK  L EY
Sbjct: 302 GIENYSRHFTGRLPGEPPPTLLDYMPREFLLFIDESHQTVPQLHGMWHGDRSRKENLIEY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATPG +EL +  G++VEQIIRPTGL+DP VE
Sbjct: 362 GFRLPSALDNRPLTFEEFENRVNQAVYVSATPGPYELTKAAGVVVEQIIRPTGLIDPEVE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI   A++  R+L+T LTKRMAEDL+EY  E  +R RYMHSE++TLE
Sbjct: 422 VRPVKGQIDDLLHEIRKRAEKRERVLVTTLTKRMAEDLSEYYTEVGVRCRYMHSEIETLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI+I+RDLR G+FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GR AR
Sbjct: 482 RIKILRDLRKGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSQGSLIQTMGRCAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  + ILYAD +T S++ A+DET RRR  Q  +N +H I P+S    I+  +D  L   
Sbjct: 542 NLEGRAILYADRMTDSMKKAMDETYRRRAIQEAYNVEHGITPES----IVRPVDMALAAI 597

Query: 741 AATTNISIDAQQLSLSKKKGKAHL----KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                + + AQ   + + K +  L    + L  +M  AA    FE+AA++RD+IK L++ 
Sbjct: 598 VGADYVDLTAQPDEIPEFKSQEQLDKFVEKLEGEMREAAKRFEFEKAAKLRDQIKELRTK 657

Query: 797 PY 798
            +
Sbjct: 658 EF 659


>gi|160934320|ref|ZP_02081707.1| hypothetical protein CLOLEP_03191 [Clostridium leptum DSM 753]
 gi|156866993|gb|EDO60365.1| hypothetical protein CLOLEP_03191 [Clostridium leptum DSM 753]
          Length = 658

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/664 (54%), Positives = 476/664 (71%), Gaps = 8/664 (1%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N+  D   F++ + Y P+GDQP AIA+L++GI   +K Q LLGVTGSGKTFTMA +I+ +
Sbjct: 2   NNQNDKELFKLVSTYKPTGDQPEAIAKLVEGIKRGDKEQTLLGVTGSGKTFTMANIIQQV 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +V+A NK LAAQL SEF+ FFP ++VEYFVSYYDYYQPEAY+  TDTYIEK+S+IN
Sbjct: 62  QRPTLVLAHNKTLAAQLCSEFREFFPESSVEYFVSYYDYYQPEAYIATTDTYIEKDSAIN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           ++ID++RHSAT +L ER D I+V+SVSCIY +G+   Y  M++ L+ G    + ELL  L
Sbjct: 122 DEIDKLRHSATSALSERRDVIIVASVSCIYSLGNPIDYRTMVISLRPGMQKNRDELLKKL 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V+ QY+R DI  IR  FRV GD +EIFP+   D A RV  FG++++ ISEF PLTG+   
Sbjct: 182 VELQYERNDINFIRNKFRVRGDVVEIFPAQSNDTAVRVEFFGDEVDRISEFNPLTGEIKA 241

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           +++ I IY  SHY+ P+  +  A++ I++EL+ RL    +EG+LLEAQR+EQR  YD+EM
Sbjct: 242 DLKHIAIYPASHYIVPKEKMKEAIQEIEQELEERLAYFRREGKLLEAQRIEQRTRYDIEM 301

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L+  G C+ IENYSR + GR PG  P TL +Y P+D LLFVDESHVT+PQ+ GMY GD  
Sbjct: 302 LQEIGFCKGIENYSRVMAGREPGSAPFTLLDYFPKDYLLFVDESHVTLPQVRGMYAGDRA 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK +L EYGFRLPS  DNRPL F+E+       + VSATPG  E E+    IVEQ+IRPT
Sbjct: 362 RKESLIEYGFRLPSAYDNRPLNFDEFYQRINQAVFVSATPGDLEREKSTQ-IVEQVIRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP + ++    Q++D+  EINL   +G R+L+T LTK+MAEDLT YL    IRVRYM
Sbjct: 421 GLLDPEIIVKPTEGQIDDLISEINLRVAKGNRVLVTTLTKKMAEDLTSYLEGMGIRVRYM 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H ++ T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LV ILDADKEGFLRS  SLI
Sbjct: 481 HHDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVVILDADKEGFLRSDRSLI 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN   +VI+YAD +T S++ AI ET RRR+ Q+ +N++H I P+++ +K+ EV
Sbjct: 541 QTIGRAARNAEGQVIMYADQVTPSMETAIRETQRRRDIQMRYNQEHGITPKTIVKKVAEV 600

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           ++    +D   +          L+K + +  ++ L K+M  AA  L FE AA +RD IK+
Sbjct: 601 LEISSHKDDKKSG-------KRLTKLERQQLIEQLTKEMKAAAKLLEFEHAAYLRDRIKK 653

Query: 793 LKSS 796
           L+S 
Sbjct: 654 LQSG 657


>gi|227537637|ref|ZP_03967686.1| excision endonuclease subunit B [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242523|gb|EEI92538.1| excision endonuclease subunit B [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 677

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/669 (51%), Positives = 488/669 (72%), Gaps = 14/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L+ G++  E  Q LLGVTGSGKTFT+A VI+  Q+PA++++
Sbjct: 3   FKLTSEYQPTGDQPQAIKELVAGVNEGETYQTLLGVTGSGKTFTIANVIQETQKPALILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP N+V YFVSYYDYYQPEA++  ++TYIEK+ +INE+I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPENSVNYFVSYYDYYQPEAFIASSNTYIEKDLAINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           + T SL+  R D +VVSSVSCIYG+G+ E +S+ I +  +G ++ +   L  LV+  Y R
Sbjct: 123 ATTSSLMSGRRDIVVVSSVSCIYGMGNPEDFSRSIFRFAVGTTISRNAFLHKLVEILYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD+++++P++L D A RVS FG++I+E+S   P++ + I  +E + +
Sbjct: 183 TTAEFKRGTFRVKGDTVDVYPAYL-DYAIRVSFFGDEIDELSAIDPVSAKTINKMEDLAL 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VTP+     ++  I++EL  R  +LE EG++LEA+RLE+R+ YDLEM+   G C
Sbjct: 242 FPANLFVTPKEKFTQSIWAIQDELMQRKTQLEDEGKMLEAKRLEERVNYDLEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GR PG  P TL +Y P+D LL +DESHVTIPQ+  MY GD  RK +L E
Sbjct: 302 SGIENYSRFFDGRQPGMRPFTLLDYFPDDYLLVIDESHVTIPQLRAMYGGDRSRKVSLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL F E+  L   TI VSATPG +EL+Q +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAALDNRPLNFPEFESLTNQTIYVSATPGDYELQQTEGVVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R A  QV+D  ++++   ++G R+L T LTKRMAE+LT+Y+   NI+VRY+HSEVKTL
Sbjct: 422 EVRPAINQVDDFLEQVDKTIKEGGRVLATTLTKRMAEELTKYMTRLNIKVRYIHSEVKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R LRLG+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 482 ERVEILRGLRLGEFDVLVGVNLLREGLDLPEVTLVAILDADKEGFLRSERSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIME---VI 733
           RN   +VI+YAD +T S+++ IDET RRREKQ+++N++H+I P++V   +E+IME   V 
Sbjct: 542 RNDKGRVIMYADKMTDSMRITIDETNRRREKQMKYNEEHHITPRTVGKTREEIMEQTSVA 601

Query: 734 D------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           D       I +E   T  ++ D     LS+K  K  +++ +K+M  AA  ++F EAA++R
Sbjct: 602 DFNGMEPKIYVEPDPTVAVAADPVMQYLSEKDLKKAIETTKKRMEKAAKEMDFLEAAKLR 661

Query: 788 DEIKRLKSS 796
           DE+  L+ +
Sbjct: 662 DEMFSLEKA 670


>gi|332971677|gb|EGK10625.1| excision endonuclease subunit UvrB [Desmospora sp. 8437]
          Length = 675

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/656 (53%), Positives = 474/656 (72%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P GDQP AI  L  G+ + +K Q LLG TG+GKTFT+A  I    +P +V+A
Sbjct: 20  FRLVSEFQPRGDQPKAIEMLTDGLLTGKKHQTLLGATGTGKTFTIAHTIARAGKPTLVIA 79

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL  E K FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK++SIN++ID++RH
Sbjct: 80  PNKTLAAQLCGELKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIEKDASINDEIDKLRH 139

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IVV+SVSCIYG+GS E Y   +V L++G   ++  +L  LV  QY+R 
Sbjct: 140 SATSALFERQDVIVVASVSCIYGLGSPEEYRSQVVSLRVGMEKDRNAVLRDLVDIQYERN 199

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  +RGTFRV GD +EIFP+   + A RV  FG++I+ I E   LTG+ + + E I I+
Sbjct: 200 DMNFVRGTFRVRGDVLEIFPASRSEQAIRVEFFGDEIDRIREIDVLTGEILGDREHIAIF 259

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +  +  A+K I+ EL  RL  L+ + +LLEAQRLEQR  YD+EM+   G C 
Sbjct: 260 PASHYVTRQEVMRRALKEIEAELDERLAVLKSQDKLLEAQRLEQRTRYDMEMMREVGFCS 319

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L G+  GEPP TL +Y P+D L  +DESHVT+PQ+  MY+GD  RK  L ++
Sbjct: 320 GIENYSRHLVGKKAGEPPYTLLDYFPDDFLTIIDESHVTVPQVGAMYKGDRARKEMLVDH 379

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+FEE+       I VSATPG +EL +    + EQIIRPTGL+DP + 
Sbjct: 380 GFRLPSAMDNRPLQFEEFEKRLHQVIYVSATPGPYELGKTPE-LTEQIIRPTGLLDPKIH 438

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  E+N   ++  R+L+T LTK+MAEDLT+YL E  I+V+Y+HS++KT+E
Sbjct: 439 VRPIQGQIDDLIGEVNKRVERNERVLVTTLTKKMAEDLTDYLKEAGIKVQYLHSDIKTIE 498

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 499 RMQILRSLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 558

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N N +VI+YAD +T+S+Q AI+ET RRR  Q+ HN+KH I PQ++++ + EVI+   + E
Sbjct: 559 NANGEVIMYADRVTESMQKAIEETERRRSVQIAHNEKHGITPQTIQKAVREVIEATKVAE 618

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +     ++ D ++  +S K+ +  ++ L K+M  AA +L FE AA +RD I  LK+
Sbjct: 619 ENEAYQVAPDMEK--MSGKERRQLIEGLEKEMKQAARDLQFERAAELRDMILELKA 672


>gi|111017990|ref|YP_700962.1| excinuclease ABC subunit B [Rhodococcus jostii RHA1]
 gi|110817520|gb|ABG92804.1| excision nuclease ABC subunit B [Rhodococcus jostii RHA1]
          Length = 746

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/692 (52%), Positives = 482/692 (69%), Gaps = 33/692 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+GDQPAAIA L + I++ EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 54  FEVVSDHKPAGDQPAAIADLERRINAGEKDVVLLGATGTGKSATTAWLIEKVQRPTLVMA 113

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E ++  P+N+VEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 114 PNKTLAAQLANELRDMLPNNSVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 173

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ +SY    VQL++G  V +  LL  LV  QY R 
Sbjct: 174 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVQLEVGVEVPRDALLRLLVDVQYTRN 233

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG  +R V++++I+
Sbjct: 234 DLAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGDVVRKVDSVRIF 292

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+K I+ EL+ RL +LE +G+LLEAQRL  R  YDLEM++  G C 
Sbjct: 293 PATHYVAGPERMERAVKDIEAELEERLADLEGKGKLLEAQRLRMRTQYDLEMIKQVGFCS 352

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG  P TL +Y PED LL +DESHVT+PQI  MY GD  RK  L E+
Sbjct: 353 GIENYSRHIDGRGPGTAPATLIDYFPEDFLLVIDESHVTVPQIGAMYEGDMSRKRNLVEF 412

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 413 GFRLPSATDNRPLTWEEFTQRIGQTVYLSATPGKYELGQAGGEFVEQVIRPTGLVDPQVV 472

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ TL 
Sbjct: 473 VKPTKGQIDDLVHEIRERADRDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSDIDTLR 532

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 533 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAAR 592

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+Q AI+ET RRREKQ+ +N+K  ++PQ +++KI +++D +  E+
Sbjct: 593 NVSGQVHMYADKITDSMQHAIEETERRREKQIAYNEKMGVDPQPLRKKIADILDQV-YEE 651

Query: 741 AATTNISIDAQQLSLSKKKGKAH-----------------------------LKSLRKQM 771
           A  T   +D      +  +G+                               +K L  QM
Sbjct: 652 AEDTASGVDVGGSGRNATRGRRAQGEAGRSVSAGVYEGRDTKSMPRAELADLVKELTNQM 711

Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
             AA +L FE A R+RDEI  LK     +G+D
Sbjct: 712 MNAARDLQFELAGRLRDEIADLKKE--LRGMD 741


>gi|152966886|ref|YP_001362670.1| excinuclease ABC subunit B [Kineococcus radiotolerans SRS30216]
 gi|151361403|gb|ABS04406.1| excinuclease ABC, B subunit [Kineococcus radiotolerans SRS30216]
          Length = 708

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/685 (51%), Positives = 481/685 (70%), Gaps = 33/685 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ PSGDQP AIA+L + +++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 14  FEVVSEFSPSGDQPTAIAELARRVNAGEQDVVLLGATGTGKSATTAWLIEQVQRPTLVMA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE+++R+RH
Sbjct: 74  PNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV++VSCIYG+G+ + Y   +  LK+G ++++ ELL   V +QY R 
Sbjct: 134 SATNSLLTRRDVVVVATVSCIYGLGTPQEYVDRMTALKVGMTMDRDELLRKFVGEQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E+ A R+  FG++I+++    PLTG+ +R  + + I+
Sbjct: 194 DLAFTRGTFRVRGDTVEIIPVY-EEHAIRIEFFGDEIDKLYTLNPLTGEVLREEQHVYIF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     L  A+  I+ EL+ RL ELE++G+LLEAQRL  R TYDLEML   GSC 
Sbjct: 253 PASHYVAGPERLERAVGSIEAELEQRLAELEQQGKLLEAQRLRMRTTYDLEMLRQVGSCS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+   R PG    TL +Y PED LL +DESHVT+PQI GMY GD  RK TL ++
Sbjct: 313 GIENYSRHFDNRPPGSASNTLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRTLVDF 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPLR+EE+      T+ +SATPG +EL + +G +VEQIIRPTGLVDP V 
Sbjct: 373 GFRLPSAMDNRPLRWEEFLERTGQTVYLSATPGKYELSRGKG-VVEQIIRPTGLVDPQVV 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI L   +  R+L+T LTK+MAEDLT+Y  ++ +RVRY+HS++ TL 
Sbjct: 432 VKPTKGQIDDLLHEIRLRTDKDERVLVTTLTKKMAEDLTDYFLDQGVRVRYLHSDIDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSL+QTIGRAAR
Sbjct: 492 RVELLRELRQGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSATSLVQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+  AIDET RRREKQ+ +N++  ++P  ++++I ++ D I  ED
Sbjct: 552 NVSGEVHMYADRITPSMAQAIDETNRRREKQVAYNRERGVDPMPLRKRIADITDLIARED 611

Query: 741 AATTN-ISIDAQQLSLSKKKGKAH------------------------------LKSLRK 769
           A T   ++        ++ +GKA                               ++ L  
Sbjct: 612 ADTAELLAAAQGGGGRAQSRGKAPTPGGGRTRKGAREEAGQSRPGLPQADLAQLIQELTD 671

Query: 770 QMHLAADNLNFEEAARIRDEIKRLK 794
           QMH AA  L FE AAR+RDE+  LK
Sbjct: 672 QMHSAAAELQFELAARLRDEVGDLK 696


>gi|147679073|ref|YP_001213288.1| excinuclease ABC subunit B [Pelotomaculum thermopropionicum SI]
 gi|146275170|dbj|BAF60919.1| helicase subunit of the DNA excision repair complex [Pelotomaculum
           thermopropionicum SI]
          Length = 692

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/655 (55%), Positives = 478/655 (72%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ++++Y P GDQP AIA L++G+    K Q+LLG TG+GKT+TMA+VI+A+QRPA+V+A
Sbjct: 19  FQLKSEYVPKGDQPKAIAALVEGLQKGYKGQVLLGATGTGKTYTMAQVIQAVQRPALVLA 78

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EFK FFP+NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SSIN++ID++RH
Sbjct: 79  PNKTLAAQLCAEFKEFFPNNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSINDEIDKLRH 138

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G  E Y  +++ L+ G+  ++  +L  LV  QY+R 
Sbjct: 139 SATCALFERRDVIIVASVSCIYGLGDPEEYRTLVLSLRRGECYDRDAVLRKLVSIQYERN 198

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +RG FRV GD +EIFP+   + A RV  FG+++E + EF  LTG+ +     + I+
Sbjct: 199 DINFVRGKFRVRGDVLEIFPASATERAIRVEFFGDEVERLREFDVLTGEILGERAHVSIF 258

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T R  +  A+  I+ EL+ RL EL  +G+LLEAQRLEQR  +D+EM+   G C 
Sbjct: 259 PASHYATSRERMERAIASIEAELEERLAELRSKGKLLEAQRLEQRTRFDIEMMREMGFCS 318

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PG+PP TL +Y PED ++F+DESHV +PQ+ GMY GD  RK  L E+
Sbjct: 319 GIENYSRHLTGREPGQPPYTLIDYFPEDFIMFIDESHVAVPQVGGMYEGDRSRKEALVEH 378

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F+E+       I VSATPG +EL+     +VEQIIRPTGLVDP + 
Sbjct: 379 GFRLPSAFDNRPLTFKEFMERINQVIYVSATPGPYELKNS-ARVVEQIIRPTGLVDPEIS 437

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+  EI L  ++G R+L+T LTK+MAEDLT+Y  E  ++VRY+HS++ T+E
Sbjct: 438 VRPTRGQIDDLLGEIRLRVKRGERVLVTTLTKKMAEDLTDYFREVGVKVRYLHSDINTIE 497

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS+ SLIQTIGRAAR
Sbjct: 498 RMEILRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGRAAR 557

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N + KVI+YAD IT S+  AI ET RRR  Q+E+N++H I P++V++ + EVI+     E
Sbjct: 558 NADGKVIMYADKITDSMSGAIRETERRRRIQMEYNRQHGITPETVRKAVREVIEATRAAE 617

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             A            +S+ + K H+ +L K+M  AA  L FE AA++RD I  L+
Sbjct: 618 PGAVYRAVPRTGGKKMSRAELKKHIAALEKEMREAARQLAFERAAQLRDMIIELR 672


>gi|312127512|ref|YP_003992386.1| excinuclease ABC subunit B [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777531|gb|ADQ07017.1| excinuclease ABC, B subunit [Caldicellulosiruptor hydrothermalis
           108]
          Length = 661

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/663 (56%), Positives = 487/663 (73%), Gaps = 17/663 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+GDQP AI  L +GI   EK Q LLGVTGSGKTFTMAKVIE +QRP +V+A
Sbjct: 4   FKLVSDFKPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSINE+ID++RH
Sbjct: 64  HNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +GS E Y  + + L+ G + ++ E++  L++ QY+R 
Sbjct: 124 SATSALFERRDVIIVASVSCIYSLGSPEDYLNLTISLRPGMTKDRDEVIRELIRMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD +E+FP+   D A R+  FG++IE I+EF  +TG+ I     + I+
Sbjct: 184 DVDFRRGRFRVRGDVLEVFPASNTDRAIRIEFFGDEIERITEFDVVTGEVIGRRNHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    L  A+K I+EEL+ RL EL   G+L+EAQRLEQR  YD+EML+  G C+
Sbjct: 244 PASHYVTTAEKLKRAIKSIEEELEQRLKELRSMGKLVEAQRLEQRTRYDIEMLQEMGFCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PG PP TL +Y P+D ++F+DESHVTIPQ+  MY GD  RK  L EY
Sbjct: 304 GIENYSRHLTGRPPGSPPYTLLDYFPKDFIMFIDESHVTIPQVRAMYNGDKARKDALVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I VSATPG +EL++    IVEQIIRPTGLVDP +E
Sbjct: 364 GFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYELKKSSR-IVEQIIRPTGLVDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +   + Q++ +  EI    ++  R+L+T LTK+MAE LT+YL +  IRVRYMHS++ T+E
Sbjct: 423 VHPVQGQIDHLIGEIRKRVEKNQRVLVTTLTKKMAESLTDYLKDVGIRVRYMHSDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  KVI+YAD IT ++Q AIDET RRR+ Q+E+N+KH I PQ+V++ I ++I+      
Sbjct: 543 NVYGKVIMYADRITNAMQRAIDETNRRRKIQIEYNQKHGIVPQTVRKGIRQIIE------ 596

Query: 741 AATTNISIDAQQL---------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            AT +++ + ++          +++K++ + ++K L ++M   A  L FE+AA+IRD+I 
Sbjct: 597 -ATVSVAEEEEKYEVVEKDIVENMTKEEIEEYIKELEQEMKKHAIELEFEKAAKIRDKIF 655

Query: 792 RLK 794
            LK
Sbjct: 656 ELK 658


>gi|226360119|ref|YP_002777897.1| excinuclease ABC subunit B [Rhodococcus opacus B4]
 gi|226238604|dbj|BAH48952.1| UvrABC system protein B [Rhodococcus opacus B4]
          Length = 720

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/692 (52%), Positives = 481/692 (69%), Gaps = 33/692 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+GDQP AIA L + I++ EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 28  FEVVSDHKPAGDQPTAIADLERRINAGEKDVVLLGATGTGKSATTAWLIEKVQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E ++  P+N+VEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 88  PNKTLAAQLANELRDMLPNNSVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ +SY    VQL++G  V +  LL  LV  QY R 
Sbjct: 148 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVQLEVGVEVPRDALLRLLVDVQYTRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG  +R V++++I+
Sbjct: 208 DLAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGDVVRKVDSVRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+K I+ EL+ RL +LE +G+LLEAQRL  R  YDLEM++  G C 
Sbjct: 267 PATHYVAGPERMERAVKDIEAELEERLADLENKGKLLEAQRLRMRTQYDLEMIKQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG  P TL +Y PED LL +DESHVT+PQI  MY GD  RK  L E+
Sbjct: 327 GIENYSRHIDGRGPGTAPATLIDYFPEDFLLVIDESHVTVPQIGAMYEGDMSRKRNLVEF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSATDNRPLTWEEFTQRIGQTVYLSATPGKYELGQAGGEFVEQVIRPTGLVDPEVV 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ TL 
Sbjct: 447 VKPTKGQIDDLVHEIRERADRDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSDIDTLR 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+Q AI+ET RRREKQ+ +N+K  ++PQ +++KI +++D +  E+
Sbjct: 567 NVSGQVHMYADKITDSMQHAIEETERRREKQIAYNEKMGVDPQPLRKKIADILDQV-YEE 625

Query: 741 AATTNISIDAQQLSLSKKKGKAH-----------------------------LKSLRKQM 771
           A  T   +D      +  +G+                               +K L  QM
Sbjct: 626 AEDTASGVDVGGSGRNATRGRRAQGEAGRSVSAGVYEGRDTKSMPRAELADLVKELTDQM 685

Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
             AA +L FE A R+RDEI  LK     +G+D
Sbjct: 686 MNAARDLQFELAGRLRDEIADLKKE--LRGMD 715


>gi|119944840|ref|YP_942520.1| excinuclease ABC subunit B [Psychromonas ingrahamii 37]
 gi|189037988|sp|A1STV6|UVRB_PSYIN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|119863444|gb|ABM02921.1| Excinuclease ABC subunit B [Psychromonas ingrahamii 37]
          Length = 670

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/661 (53%), Positives = 468/661 (70%), Gaps = 11/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + + P+GDQP AI QL+ G+ S    Q LLGVTGSGKTFT+A  I  + RP +++A
Sbjct: 5   FQLVSQFSPAGDQPQAIEQLINGLKSGLAFQTLLGVTGSGKTFTLANAIAKLNRPTLILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +D++IEK+++IN  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSSDSFIEKDAAINAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G   +Y QM++ L +G+ +  +E+L  LV  QY R 
Sbjct: 125 SATKALLERKDVVLVASVSAIYGLGDPTAYLQMMLHLTVGEIISSREILQRLVDLQYNRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RGTFRV G+ I+IFP+  E  A R+ +F +++E+IS F PLTGQ I  +  + +Y
Sbjct: 185 ETELSRGTFRVRGEVIDIFPADSEKEALRIELFDDEVEQISVFDPLTGQGIDKLARVTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A+  IK EL  R  E  ++ +LLE QR+ QR  YD+EM+   G C 
Sbjct: 245 PKTHYVTPREQILKAVDAIKVELNERKKEFLEQNKLLEEQRISQRTLYDIEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR+ G+ PPTLF+Y+P+D+LL +DESHVT+PQI  MY+GD  RK  L  Y
Sbjct: 305 GIENYSRYLSGRSEGQAPPTLFDYLPKDALLIIDESHVTVPQIGAMYKGDRSRKENLVNY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  + P TI VSATP  +E+ + QG I+ Q+IRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFAEFEKIAPQTIYVSATPSDYEINKSQGEIIRQVIRPTGLLDPVIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EIN+      R+L+T LTKRMAEDLT+YL+E  I+ RY+HS+V T+E
Sbjct: 425 VRPVTTQVDDLLSEINIRLPLKERVLVTTLTKRMAEDLTDYLHEHGIKARYLHSDVNTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 485 RVEIIRDLRLGIFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYA  IT S+Q AI  T  RRE Q + N ++ I PQ + +++ +V+    L  
Sbjct: 545 NLNGKAILYAARITGSMQKAIKVTEDRRELQNKFNIENGIIPQGLSKQVNDVMQ---LGQ 601

Query: 741 AATTNISIDAQQLSLSKKKGKAH-----LKSL---RKQMHLAADNLNFEEAARIRDEIKR 792
                 ++   +++  K   + H     LK +    KQM   A NL FE+AA  RDE+ +
Sbjct: 602 KNLKKGNLKQGKVAEYKANYQIHSEQDILKQIALSEKQMFACAKNLEFEKAALFRDEVTK 661

Query: 793 L 793
           L
Sbjct: 662 L 662


>gi|86740331|ref|YP_480731.1| excinuclease ABC subunit B [Frankia sp. CcI3]
 gi|86567193|gb|ABD11002.1| Excinuclease ABC subunit B [Frankia sp. CcI3]
          Length = 714

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/682 (52%), Positives = 480/682 (70%), Gaps = 30/682 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +D+ PSGDQPAAI +L + + + E   +LLG TG+GK+ T A ++E +QRP +VMA
Sbjct: 23  FQVVSDFSPSGDQPAAIDELARRVGAGESDVVLLGATGTGKSATTAWLVERLQRPTLVMA 82

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE+++R+RH
Sbjct: 83  PNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEEVERLRH 142

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ + Y   +V+L++GD +E+  LL   V  QY R 
Sbjct: 143 SATMNLLTRRDVVVVASVSCIYGLGTPQEYIDRMVRLRVGDEIERDLLLRRFVDVQYTRN 202

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EIFP + E++A RV MFG++IE ++  +PLTG+ +   E I ++
Sbjct: 203 DLAFTRGTFRVRGDTVEIFPVY-EELAVRVEMFGDEIERLTYLHPLTGEVVSEAEEIYVF 261

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+ EL  RL  +E++GRLLEAQRL  R TYD+EM+   G C 
Sbjct: 262 PATHYVAGPERMERAIAGIEAELAERLATMERQGRLLEAQRLRMRTTYDIEMMRQVGFCS 321

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G PP TL +Y P+D LL +DESH T+PQI GMY GD  RK  L E+
Sbjct: 322 GIENYSRHIDGREAGSPPHTLLDYFPDDFLLVIDESHNTVPQIGGMYEGDMSRKRNLVEH 381

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPLR+EE+      T+ +SATPG +EL +  G +VEQIIRPTGL+DP V 
Sbjct: 382 GFRLPSAMDNRPLRWEEFLERIGQTVYLSATPGPYELGRSVG-VVEQIIRPTGLLDPEVV 440

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI L A++  R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 441 LKPTKGQIDDLVHEIRLRAERDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSEVDTLR 500

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++ +LR G+FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 501 RVELLTELRRGEFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSDKSLIQTIGRAAR 560

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRREKQ+ +N +  ++PQ +++K+++++D ++ + 
Sbjct: 561 NVSGQVHMYADAITPSMRRAIDETNRRREKQIAYNTERGLDPQPLRKKVVDILDDMVRQS 620

Query: 741 AATTNI--------SIDAQQLSLSKKKGK---------------AH-----LKSLRKQMH 772
           A    I           A    +  + G+               +H     ++ L  QMH
Sbjct: 621 ADGELIGGGGRSQSRGKAPVPGMKSRAGREGAVGRYAAELAGLPSHELAQLIRQLDDQMH 680

Query: 773 LAADNLNFEEAARIRDEIKRLK 794
            AA  L FE AAR+RDEI  LK
Sbjct: 681 EAAKELQFELAARLRDEIAELK 702


>gi|240168014|ref|ZP_04746673.1| excinuclease ABC subunit B [Mycobacterium kansasii ATCC 12478]
          Length = 698

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/690 (52%), Positives = 477/690 (69%), Gaps = 30/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VM 
Sbjct: 7   FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVME 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ+ +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 67  PNKTLAAQMANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+L++G  V +  LL  LV  QY R 
Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELRVGSEVPRDGLLRLLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 187 DLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+ EL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 246 PATHYVAGPERMAHAISTIEGELAERLAELEAQGKLLEAQRLRMRTNYDVEMMRQVGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 306 GIENYSRHIDGRGPGSPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 366 GFRLPSACDNRPLTWEEFATRIGQTVYLSATPGPYELSQSGGEFVEQVIRPTGLVDPKVV 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 426 VKPTKGQIDDLIGEIRKRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG +DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D +  E 
Sbjct: 546 NVSGEVHMYADKITDSMKEAIDETERRRAKQIAYNQANGIDPQPLRKKIADILDQVYREA 605

Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773
             T  + I     + S+ +      G+A                      +K L +QM  
Sbjct: 606 DDTEAVEIGGSGRNASRGRRAQGAPGRAVSAGVFEGRDTSNMPRAELADLIKDLTEQMMA 665

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE AAR RDEI  LK     +G+D
Sbjct: 666 AARDLQFELAARFRDEIADLKKE--LRGMD 693


>gi|325105912|ref|YP_004275566.1| excinuclease ABC, B subunit [Pedobacter saltans DSM 12145]
 gi|324974760|gb|ADY53744.1| excinuclease ABC, B subunit [Pedobacter saltans DSM 12145]
          Length = 676

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/666 (52%), Positives = 477/666 (71%), Gaps = 13/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AI QL++G++S +  Q LLGVTGSGKTFT+A VIE  Q+P ++++
Sbjct: 3   FNLSSQYKPTGDQPNAIKQLVEGVNSGDHYQTLLGVTGSGKTFTIANVIEQTQKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAV YFVSYYDYYQPEA++P T+TYIEK+  IN++I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPDNAVNYFVSYYDYYQPEAFLPTTNTYIEKDLQINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             T +L+  R D IVVSS+SCIYG+G+ E +S  + +  +G  + +   L  LV+  Y R
Sbjct: 123 RTTSALMSGRRDIIVVSSISCIYGMGNPEDFSNSVFRFGVGTRISRNAFLHRLVEILYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD+++I+P++L D A+RVS FG+DIEEI+   P+TG+ I   + I I
Sbjct: 183 TTAEFKRGTFRVKGDTVDIYPAYL-DFAYRVSFFGDDIEEIAAIDPITGKSIEKTQAITI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VTP+    + +  I E+++ R  + E EGR LEA+RLE+R  YD+EM+   G C
Sbjct: 242 FPANLFVTPKEKFISVLHEIGEDMEARKKQFESEGRFLEAKRLEERTNYDMEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PG  P  L +Y P+D L+ +DESHVT+PQI  MY GD  RK +L E
Sbjct: 302 SGIENYSRYFDGRRPGMRPFCLLDYFPDDYLMVIDESHVTVPQIRAMYGGDRSRKVSLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL F+E+  L P TI VSATPG +EL+Q +G+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAALDNRPLNFQEFENLAPQTIYVSATPGDYELQQTEGVFVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    QV+D+ DEI+   +QG RIL+T LTKRMAE+L +Y+   NI+VRY+HSE+KTL
Sbjct: 422 EVRPIINQVDDLLDEIDKTIKQGDRILVTTLTKRMAEELAKYMDRLNIKVRYIHSEIKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R LRLG+FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 482 ERVEILRGLRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIMEVIDPI 736
           RN   +VI+YAD+IT S+++ IDET RRREKQ+++N++H I P++V   +E I+E    +
Sbjct: 542 RNDRGRVIMYADSITDSMRVTIDETNRRREKQIKYNEEHGIIPKTVGKSREAIIEQTSVV 601

Query: 737 LLE--------DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
             +        D +   I+ D     ++K + K  + + +K+M  A+ NL+F  AA++RD
Sbjct: 602 DFKGGIQQAYIDNSEPTIAADPVVQYMTKAQLKKSIDNTKKEMLAASKNLDFLLAAKLRD 661

Query: 789 EIKRLK 794
           E+  L+
Sbjct: 662 EMYALE 667


>gi|50914390|ref|YP_060362.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS10394]
 gi|68053077|sp|Q5XBN4|UVRB_STRP6 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|50903464|gb|AAT87179.1| Excinuclease ABC subunit B [Streptococcus pyogenes MGAS10394]
          Length = 663

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/657 (54%), Positives = 472/657 (71%), Gaps = 9/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + +  LL+ LV  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTG+ I  V+ + ++
Sbjct: 190 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVDHLVLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML   G   
Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 310 GVENYSRHMDGRLPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+ Q   II EQIIRPTGL+DP ++
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGEYEMSQTNTII-EQIIRPTGLLDPEID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  Q++D+  EIN    +  R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I  +I       
Sbjct: 549 NVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI----- 603

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + T++  I  +++   S+S+ + K  + +L+KQM  AA+ L+FE AA++RD I  LK
Sbjct: 604 SKTSHNDISKEEMDYESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660


>gi|238060167|ref|ZP_04604876.1| excinuclease ABC, B subunit [Micromonospora sp. ATCC 39149]
 gi|237881978|gb|EEP70806.1| excinuclease ABC, B subunit [Micromonospora sp. ATCC 39149]
          Length = 702

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/689 (51%), Positives = 478/689 (69%), Gaps = 29/689 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +++ P+GDQPAAI  L + +   ++  +LLG TG+GK+ T A ++E +QRP +V+A
Sbjct: 12  FQVVSEFQPAGDQPAAIDDLERRVRRGDRNTVLLGATGTGKSATTAWLVERLQRPTLVLA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK L AQL  EF    PHNAVEYFVSYYDYYQPEAY+P+TDTYIEK+SSINE+++R+RH
Sbjct: 72  PNKTLCAQLAKEFSELLPHNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSINEEVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV++VS IYG+G+ E Y    V++ IG  +++ +LL  LV  QY R 
Sbjct: 132 SATMSLLTRRDVVVVATVSAIYGLGTPEEYLDRAVRVAIGQELDRDQLLRRLVDIQYTRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P++ E++A R+ +FG+++E++    PLTG  +R V+++ I+
Sbjct: 192 DMAFQRGTFRVRGDTLEIIPAY-EELAVRIELFGDEVEKLYYLNPLTGDVVREVDSLMIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY      +  A + I+ EL  RL ELE++G+LLEAQRL  R TYDLEM+   G C 
Sbjct: 251 PATHYAAGPERMERATRDIEAELAERLAELERQGKLLEAQRLRMRTTYDLEMMRQVGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR PG PP  L +Y P+D L  +DESHVTIPQI GMY GD  RK  L ++
Sbjct: 311 GIENYSMHIDGRQPGSPPHCLLDYFPDDFLTVIDESHVTIPQIGGMYEGDASRKRMLIDH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRF+E+       + +SATPG WE+EQ QG  VEQ+IRPTGL+DP V 
Sbjct: 371 GFRLPSAADNRPLRFDEFLERVGQMVFLSATPGGWEMEQAQGEFVEQVIRPTGLIDPEVV 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI L  ++  R+L+T LTK+MAEDL++YL E  IRVRY+HSEV TL 
Sbjct: 431 VKPTKGQIDDLMHEIKLRTERDERVLVTTLTKKMAEDLSDYLLENGIRVRYLHSEVDTLR 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 491 RVELLRELRKGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738
           NV+ +V +YAD IT S+  AI+ET RRR KQ+ HN+ H I+P+ +++KI +++D I    
Sbjct: 551 NVSGQVHMYADKITPSMAEAIEETNRRRAKQVAHNEAHGISPEPLRKKIHDILDDIYREA 610

Query: 739 EDAATTNISIDAQQLSLSK------------------KKGKAH------LKSLRKQMHLA 774
           ED   T +   A+QLS  K                  ++G A       ++ L  QM  A
Sbjct: 611 EDTENTRVGGAARQLSRGKAPVKETRSRSRAGATGPSREGMARADLAQLIQELSDQMLAA 670

Query: 775 ADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           A  L FE AARIRDE+  LK     +G+D
Sbjct: 671 ARELQFELAARIRDEVADLKKE--LRGMD 697


>gi|294812003|ref|ZP_06770646.1| UvrABC system protein B [Streptomyces clavuligerus ATCC 27064]
 gi|326440272|ref|ZP_08215006.1| excinuclease ABC subunit B [Streptomyces clavuligerus ATCC 27064]
 gi|294324602|gb|EFG06245.1| UvrABC system protein B [Streptomyces clavuligerus ATCC 27064]
          Length = 719

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/706 (51%), Positives = 486/706 (68%), Gaps = 44/706 (6%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++   + +  F++ + + PSGDQP AIA L + I + EK  +LLG TG+GK+ T A +IE
Sbjct: 4   VSQIERTVAPFEVVSPFQPSGDQPTAIADLERRIRAGEKDVVLLGATGTGKSATTAWMIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 64  RLQRPTLVMAPNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +V L++G+ +++ ELL 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVPLRVGEEIDRDELLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ 
Sbjct: 184 RFVDIQYTRNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEI 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +   +++ ++  SHYV     L  A+  I+ EL+ RL EL+K+G+LLE+QRL  R TYD+
Sbjct: 243 LSEDQSLHVFPASHYVAGPERLEKAVDGIEAELEQRLAELDKQGKLLESQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   GSC  IENYS +  GR PG PP TL +Y PED LL +DESHVT+PQI  MY GD
Sbjct: 303 EMMRQIGSCSGIENYSMHFDGREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG++EL +  G  VEQIIR
Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFTERIGQTVYLSATPGAYELSRGDG-FVEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++    Q++D+  EI +  ++  R+L+T LTK+MAEDLT+Y  E  IRVR
Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRVRTERDERVLVTTLTKKMAEDLTDYFLELGIRVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS
Sbjct: 482 YLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +N +  I+PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQIAYNTEKGIDPQPLRKKIN 601

Query: 731 EVIDPILLEDAATTNI--SIDAQQLSLSKKKGKAHLKSL--------------------- 767
           +++  I  E+  T  +  S   +    S K GKA + +L                     
Sbjct: 602 DIVATIAREEVDTEELLGSDYRKPKERSGKAGKAPVPALGGKGAAQGRGRAGGKGERAGT 661

Query: 768 -------------------RKQMHLAADNLNFEEAARIRDEIKRLK 794
                               ++M  AA +L FE AAR+RDE+  LK
Sbjct: 662 GADTSGRPATELAGIIEEMTERMRAAAADLQFEIAARLRDEVGELK 707


>gi|296184678|ref|ZP_06853089.1| excinuclease ABC subunit B [Clostridium carboxidivorans P7]
 gi|296050460|gb|EFG89883.1| excinuclease ABC subunit B [Clostridium carboxidivorans P7]
          Length = 661

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/650 (54%), Positives = 469/650 (72%), Gaps = 6/650 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI  ++K I+ +EK Q LLGVTGSGKTFTMA +IE +++P +V+A
Sbjct: 4   FKIHSKFKPTGDQPQAIDSIVKSINDKEKFQTLLGVTGSGKTFTMANIIERVKKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP N VEYFVSYYDYYQPEAYV +TDTYIEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFREFFPENCVEYFVSYYDYYQPEAYVAQTDTYIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D +VV+SVSCIYG+G+ E Y ++ + L+ G + ++ E+L  LV+ QY+R 
Sbjct: 124 SATSALLERTDVVVVASVSCIYGLGNPEEYKKLTLSLREGMTKDRDEVLKKLVEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I  +RGTFRV GD ++IFP+     A R+  FG++I+ I EF  LTG+ I   + + I+
Sbjct: 184 EINFVRGTFRVKGDVLDIFPASSSGKAIRIEFFGDEIDRIKEFDALTGETIGTRKHVSIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T R  L  A+K I+ EL+ R+ EL  + +LLEAQRL+QR  +D+EM+   G C 
Sbjct: 244 PASHFATSRERLEIAIKSIESELEERVRELTSQDKLLEAQRLKQRTNFDIEMMREVGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR  G PP TL +Y PED LLF+DESHVTIPQ+  MY GD  RK +L EY
Sbjct: 304 GIENYSRILDGRAKGTPPQTLIDYFPEDYLLFIDESHVTIPQVKAMYAGDRSRKESLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F E+       + VSATP ++ELE     + EQIIRPTGL+DP +E
Sbjct: 364 GFRLPSAFDNRPLTFNEFEGKLNQVLFVSATPANYELEHSTN-VAEQIIRPTGLLDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+Y  I    ++G RIL+T LTK+MAEDL++Y  E +I+  Y+HS + T++
Sbjct: 423 VKPIKGQIDDLYKNIVETIKRGYRILVTTLTKKMAEDLSDYFKEMDIKANYLHSGIDTIQ 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G+FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RMEIIRDLRKGEFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--ILL 738
           N  SKVI+YAD IT S+  AI ET RRR+ Q+E+N+KHNI P+++K++I EVI+   +L 
Sbjct: 543 NSESKVIMYADRITDSMGKAISETNRRRKIQMEYNEKHNIVPKTIKKEIREVIEATKVLE 602

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           E+A   ++    + +  + +     +    K+M  AA  L FE AA +RD
Sbjct: 603 ENAQYDSLE---EAMEANNENIDLLISKYEKEMKQAAKELQFELAADLRD 649


>gi|282849045|ref|ZP_06258434.1| excinuclease ABC, B subunit [Veillonella parvula ATCC 17745]
 gi|282581320|gb|EFB86714.1| excinuclease ABC, B subunit [Veillonella parvula ATCC 17745]
          Length = 725

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/681 (52%), Positives = 479/681 (70%), Gaps = 28/681 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P+GDQP AI  L +GI   E  Q+LLG TG+GKTFTMAKVIEA+Q+P +++A
Sbjct: 14  FKVEAPFAPTGDQPTAIQSLTEGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKPTLIIA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++ID++RH
Sbjct: 74  HNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEIDKLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G  E YS +++ L++G +  + E+L+ LV  QY R 
Sbjct: 134 SATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQTKSRDEILAKLVDIQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  IRGTFRV GD+I+IFP+   + A RV +FG++I+ + E   LTG+ I   + + +Y
Sbjct: 194 DMNFIRGTFRVQGDTIDIFPAAYSERAIRVELFGDEIDRLVEVDSLTGEVIAERKHVAVY 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +  +N A++ I+ EL  +L +L+   RLLEAQRLEQR  YD+EM++  G C 
Sbjct: 254 PASHYVTTKEKMNIAVERIEAELDEQLAKLKAADRLLEAQRLEQRTRYDIEMMQEMGYCS 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++ R  GE P TL +Y P+D L+ VDESHVT+PQI  MY GD  RK +L EY
Sbjct: 314 GIENYSRHMSERKAGEAPFTLIDYFPDDFLIMVDESHVTMPQIRAMYNGDRARKESLIEY 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       + VSATPG +E+E  +  I EQIIRPTGL+DP +E
Sbjct: 374 GFRLPSTLDNRPLQFDEFVERINQIVYVSATPGPYEME-VETNIAEQIIRPTGLLDPSIE 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EI+  A +  R+L+T LTK+MAEDLTE+L E  +RVRY+HS++ T+E
Sbjct: 433 IRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSDIVTIE 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T++IQTIGRAAR
Sbjct: 493 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN  VI+YAD +T S+Q AIDET RRR  Q  +N +HNI P+SV + + E+I+   +E+
Sbjct: 553 NVNGHVIMYADRVTGSMQRAIDETDRRRAVQEAYNIEHNITPKSVSKDVKELIELTKIEE 612

Query: 741 AATTNIS--IDAQQLSLSKKKGKAH-------------------------LKSLRKQMHL 773
              T+       +       +G  H                         ++ L +QM  
Sbjct: 613 DMVTDGKGLSSKKGKQKKSSEGMDHGHESYVQDTSAPKVADITPEELYNKIEELDRQMKA 672

Query: 774 AADNLNFEEAARIRDEIKRLK 794
           AA  L FE AA++RD++  L+
Sbjct: 673 AAKQLEFETAAKLRDQLGVLR 693


>gi|332704019|ref|ZP_08424107.1| UvrABC system protein B [Desulfovibrio africanus str. Walvis Bay]
 gi|332554168|gb|EGJ51212.1| UvrABC system protein B [Desulfovibrio africanus str. Walvis Bay]
          Length = 679

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/656 (53%), Positives = 464/656 (70%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P GDQP AI +L   I +    Q+LLGVTGSGKTFTMA V+  + RP +VMA
Sbjct: 17  FKLVSPFEPMGDQPQAIEKLAWAIENGVSEQVLLGVTGSGKTFTMANVVAKVNRPTLVMA 76

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL++EFK  FP NAVEYFVSYYDYYQPEAY+P TDTYIEK+SSIN+ ID++RH
Sbjct: 77  PNKTLAAQLFNEFKALFPENAVEYFVSYYDYYQPEAYLPHTDTYIEKDSSINDDIDKLRH 136

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D ++V+SVSCIYG+GS E Y++M+V L+ G  +  + L + LV+  Y+R 
Sbjct: 137 SATHALLTRRDVLIVASVSCIYGLGSPEYYAKMVVPLERGQQLSMERLAARLVEVHYERN 196

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD +EI P++  + A RV  FG+++E I E  PLTG+    ++   I+
Sbjct: 197 DYDFSRGKFRVRGDVLEIIPAYSRERALRVEFFGDEVEAIYETDPLTGEVFSTIKKTVIF 256

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+V+ R   + A   I++EL  RL   ++E +LLEAQR+EQR  +DLEM+E  G C 
Sbjct: 257 PASHFVSDRDNTSRASSDIRDELGERLRYFQRENKLLEAQRIEQRTMFDLEMIEELGYCN 316

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  GEPP TL +Y PED LLFVDESH+TI QI GM++GD  RK TL ++
Sbjct: 317 GIENYSRHLDGRRAGEPPATLLDYFPEDFLLFVDESHITISQIGGMFKGDRSRKQTLVDF 376

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATPG WELE+    +VEQIIRPTGLVDP +E
Sbjct: 377 GFRLPSALDNRPLAFEEFLTRVNQCVYVSATPGPWELERSGDAVVEQIIRPTGLVDPILE 436

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++++  E  L   +G R+L+T LTKRMAEDLTEY+    ++ RY+HS++ TLE
Sbjct: 437 VRPVKGQMDNLLAECKLRKTRGERVLVTTLTKRMAEDLTEYMLSMGVQTRYLHSDIDTLE 496

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ II+ LR G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SL+QT GRAAR
Sbjct: 497 RVAIIQALRAGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSARSLVQTFGRAAR 556

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  KV++YAD IT S++ A+DET RRR +Q +HN++  I P+++ + +  V++ +  + 
Sbjct: 557 NVGGKVVMYADKITDSMRAAMDETNRRRTRQEDHNREMGITPRTILKSLENVLEKLYPDS 616

Query: 741 AATT--NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A T   ++ +A +     K+ +  +KSL + M  AA  L FE AA IRD I  LK
Sbjct: 617 EAETYAKVAEEAAKYGHDPKRIEKEIKSLERDMREAAKELAFERAAEIRDRIFSLK 672


>gi|239828307|ref|YP_002950931.1| excinuclease ABC subunit B [Geobacillus sp. WCH70]
 gi|239808600|gb|ACS25665.1| excinuclease ABC, B subunit [Geobacillus sp. WCH70]
          Length = 659

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/657 (56%), Positives = 479/657 (72%), Gaps = 6/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AIA+L++GI    K Q LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 5   FELVSAYKPQGDQPKAIAKLVEGIRKGVKHQTLLGATGTGKTFTISNVIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY+R 
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ I   E + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEIIAEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL ++G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRLAIENIEKELEERLRELREQGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D L+ +DESHVT+PQI GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIIDESHVTLPQIRGMYNGDRARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       I VSATPG +ELE     +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPE-VVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+   ++  R L+T LTK+MAEDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIHERIKRNERTLVTTLTKKMAEDLTDYLKEVGIKVAYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+GK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRMGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTITKS+++AI+ET RRR  Q  +NKKH I PQ+VK++I +VI       
Sbjct: 544 NANGHVIMYADTITKSMEIAINETKRRRAIQEAYNKKHGIVPQTVKKEIRDVIRATY--- 600

Query: 741 AATTNISIDAQQL--SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA    + D +     ++KK+ +  +  L K+M  AA  L+FE AA++RD I  LK+
Sbjct: 601 AAEEKETYDTKPSYGKMAKKEREKLIADLEKEMKEAAKALDFERAAQLRDIIFELKA 657


>gi|254391573|ref|ZP_05006773.1| UvrABC system protein B [Streptomyces clavuligerus ATCC 27064]
 gi|197705260|gb|EDY51072.1| UvrABC system protein B [Streptomyces clavuligerus ATCC 27064]
          Length = 709

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/696 (52%), Positives = 482/696 (69%), Gaps = 44/696 (6%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AIA L + I + EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 4   FEVVSPFQPSGDQPTAIADLERRIRAGEKDVVLLGATGTGKSATTAWMIERLQRPTLVMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE+++R+RH
Sbjct: 64  PNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D IVV+SVSCIYG+G+ + Y   +V L++G+ +++ ELL   V  QY R 
Sbjct: 124 SATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVPLRVGEEIDRDELLRRFVDIQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ +   +++ ++
Sbjct: 184 DVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEILSEDQSLHVF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     L  A+  I+ EL+ RL EL+K+G+LLE+QRL  R TYD+EM+   GSC 
Sbjct: 243 PASHYVAGPERLEKAVDGIEAELEQRLAELDKQGKLLESQRLRMRTTYDIEMMRQIGSCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +  GR PG PP TL +Y PED LL +DESHVT+PQI  MY GD  RK TL ++
Sbjct: 303 GIENYSMHFDGREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL++EE+      T+ +SATPG++EL +  G  VEQIIRPTGLVDP V 
Sbjct: 363 GFRLPSALDNRPLKWEEFTERIGQTVYLSATPGAYELSRGDG-FVEQIIRPTGLVDPEVV 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+  EI +  ++  R+L+T LTK+MAEDLT+Y  E  IRVRY+HS+V TL 
Sbjct: 422 VKPTEGQIDDLVHEIRVRTERDERVLVTTLTKKMAEDLTDYFLELGIRVRYLHSDVDTLR 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 482 RVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT +++ AIDET RRREKQ+ +N +  I+PQ +++KI +++  I  E+
Sbjct: 542 NVSGQVHMYADKITPAMEKAIDETNRRREKQIAYNTEKGIDPQPLRKKINDIVATIAREE 601

Query: 741 AATTNI--SIDAQQLSLSKKKGKAHLKSL------------------------------- 767
             T  +  S   +    S K GKA + +L                               
Sbjct: 602 VDTEELLGSDYRKPKERSGKAGKAPVPALGGKGAAQGRGRAGGKGERAGTGADTSGRPAT 661

Query: 768 ---------RKQMHLAADNLNFEEAARIRDEIKRLK 794
                     ++M  AA +L FE AAR+RDE+  LK
Sbjct: 662 ELAGIIEEMTERMRAAAADLQFEIAARLRDEVGELK 697


>gi|19746295|ref|NP_607431.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS8232]
 gi|23822292|sp|Q8P0J7|UVRB_STRP8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|19748485|gb|AAL97930.1| putative excinuclease ABC (subunit B) [Streptococcus pyogenes
           MGAS8232]
          Length = 663

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/657 (53%), Positives = 472/657 (71%), Gaps = 9/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + +  LL+ LV  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTG+ I  V+ + ++
Sbjct: 190 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVDHLVLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML   G   
Sbjct: 250 PATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 310 GVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR +E+       + VSATPG +E+ Q   II EQIIRPTGL+DP ++
Sbjct: 370 GFRLPSALDNRPLRRKEFESHVHQIVYVSATPGEYEMSQTNTII-EQIIRPTGLLDPEID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  Q++D+  EIN    +  R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I   I       
Sbjct: 549 NVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGFISI----- 603

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + T++  I  +++   S+S+ + K  + +L+KQM  AA+ L+FE AA++RD I  LK
Sbjct: 604 SKTSHNDISKEEMDYESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660


>gi|163815024|ref|ZP_02206411.1| hypothetical protein COPEUT_01180 [Coprococcus eutactus ATCC 27759]
 gi|158449707|gb|EDP26702.1| hypothetical protein COPEUT_01180 [Coprococcus eutactus ATCC 27759]
          Length = 662

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/656 (52%), Positives = 477/656 (72%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L+KG     + + LLGVTGSGKTFTMA VI+ + +P +V+A
Sbjct: 4   FELVSEYKPTGDQPEAIEKLVKGFQEGNQFETLLGVTGSGKTFTMANVIQQLNKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYV  TDTYI K+SSIN+ IDRMRH
Sbjct: 64  HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVASTDTYIAKDSSINDDIDRMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L++R D IVV+SVSCIYGIG  + Y   ++  ++G   ++ +++  L   QY R 
Sbjct: 124 SATAALIDRKDVIVVASVSCIYGIGDPDEYRNQMLSFRVGMIKDRDQVIDELTDIQYDRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RGTFRV GD +EI P    D   R+  FG++I+ I+EF PLTG+  R++    ++
Sbjct: 184 DMDLQRGTFRVRGDVLEIIPVSTFDDGIRIEFFGDEIDRITEFDPLTGEGKRDLTYTCLF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  +  +  A+K I+ ELK R+   + + +L+EAQR+E+R  +D+EM+  TG C 
Sbjct: 244 PASHYVVGQEKMEKALKRIEAELKDRVAYFKSKDKLIEAQRIEERTNFDMEMMRETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  L GR+ GE P TL ++  +D LL +DESH+T+PQ+  MY GD  RK  L +Y
Sbjct: 304 GIENYSGPLAGRSAGETPSTLLDFFGDDFLLIIDESHMTVPQVGAMYSGDRSRKMNLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATPG +E E+ Q ++ EQIIRPTGL+DPPVE
Sbjct: 364 GFRLPSALDNRPLNFSEFEQKLDQVMFVSATPGKYE-EEHQMLMAEQIIRPTGLLDPPVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+    +QG ++L+T LTKRMAEDLT Y+ + +I+V+Y+HS++ T+E
Sbjct: 423 VRPVEGQIDDLLKEVRKETEQGHKVLVTTLTKRMAEDLTSYMRDNDIKVKYLHSDIDTME 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RVEIVRDLRLGVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YADTIT S++ A+DET+RRRE Q ++N++H I P+++++ I ++I  I ++ 
Sbjct: 543 NVDGHVIMYADTITGSMKYALDETSRRREIQQKYNEEHGITPKTIEKSIRDLI-TIEVKK 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
               +   DA+  S++KK+ +  +  L K+M++AA +LNFE AA IRD++K  K++
Sbjct: 602 EELPDEDKDAE--SMTKKELQKVIAKLTKKMNMAAADLNFEVAAEIRDQLKVYKAA 655


>gi|302390209|ref|YP_003826030.1| Excinuclease ABC subunit B [Thermosediminibacter oceani DSM 16646]
 gi|302200837|gb|ADL08407.1| Excinuclease ABC subunit B [Thermosediminibacter oceani DSM 16646]
          Length = 671

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/658 (55%), Positives = 474/658 (72%), Gaps = 2/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P GDQP AIA L +GI    K Q LLG TG+GKTFT+A +IE +Q+P +V+A
Sbjct: 4   FRVVSEFTPKGDQPKAIAALSEGIRKGYKFQTLLGATGTGKTFTIANLIEKVQKPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL SE K FFP+NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SIN++ID++RH
Sbjct: 64  HNKTLAGQLCSELKEFFPNNAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D ++V+SVSCIY +GS   Y   ++ L+ G   ++ E++  LV+ QY R 
Sbjct: 124 SATAALFERRDVVIVASVSCIYSLGSPVDYENQVISLRPGMVKDRDEIIRRLVEIQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    R TFRV GD +EI+P+   + A RV  FG+ I+ I+E   LTG+ +     + I+
Sbjct: 184 EFEFSRNTFRVHGDILEIYPASFTERAIRVEFFGDVIDRITEIDTLTGEVMGERTHVSIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  L  A+K IKEEL+ RL EL  +G+LLEA RLEQR  YD+EML  TG C+
Sbjct: 244 PASHYVTPRDKLEAAIKSIKEELEERLAELRAKGKLLEAARLEQRTNYDIEMLRETGYCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGEPP TL +Y P D L+ +DESHVTIPQ+  M+ GD  RK  L E+
Sbjct: 304 GIENYSRHLTGRKPGEPPFTLLDYFPRDYLIIIDESHVTIPQLRAMWAGDRSRKEALVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I +SATPG +ELE+    +VEQIIRPTGLVDP VE
Sbjct: 364 GFRLPSAFDNRPLTFEEFEERINQVIFLSATPGPYELEKSSQ-VVEQIIRPTGLVDPEVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI   A++  R+L+T LTK+MAEDL +YL E  I+V+Y+HSE+ TLE
Sbjct: 423 VRPTKGQIDDLIGEIRKRAEKDQRVLVTTLTKKMAEDLCDYLRESGIKVKYLHSEINTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGKFD LVG+NLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RLQILRDLRLGKFDCLVGVNLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YADTIT+S+  AI ET RRR  Q+E+N+KH I P +VK+ I E+I+     +
Sbjct: 543 NAEGRVIMYADTITESMARAISETNRRRMIQMEYNRKHGIVPTTVKKGIREMIEATKAAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
                +  +     +SKK+ KA+L  L K+M  AA NL FE AA++RD I  +K+  +
Sbjct: 603 ERADYLP-EKDLARMSKKELKAYLDKLEKEMKQAARNLEFERAAQLRDIIFEIKAQAF 659


>gi|227551701|ref|ZP_03981750.1| excision endonuclease subunit UvrB [Enterococcus faecium TX1330]
 gi|257887163|ref|ZP_05666816.1| excinuclease ABC [Enterococcus faecium 1,141,733]
 gi|257895700|ref|ZP_05675353.1| excinuclease ABC [Enterococcus faecium Com12]
 gi|257898270|ref|ZP_05677923.1| excinuclease ABC [Enterococcus faecium Com15]
 gi|293377690|ref|ZP_06623879.1| excinuclease ABC, B subunit [Enterococcus faecium PC4.1]
 gi|293571886|ref|ZP_06682902.1| excinuclease ABC, B subunit [Enterococcus faecium E980]
 gi|227179142|gb|EEI60114.1| excision endonuclease subunit UvrB [Enterococcus faecium TX1330]
 gi|257823217|gb|EEV50149.1| excinuclease ABC [Enterococcus faecium 1,141,733]
 gi|257832265|gb|EEV58686.1| excinuclease ABC [Enterococcus faecium Com12]
 gi|257836182|gb|EEV61256.1| excinuclease ABC [Enterococcus faecium Com15]
 gi|291608140|gb|EFF37446.1| excinuclease ABC, B subunit [Enterococcus faecium E980]
 gi|292643690|gb|EFF61811.1| excinuclease ABC, B subunit [Enterococcus faecium PC4.1]
          Length = 664

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/656 (53%), Positives = 471/656 (71%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL+ G+   +K Q+LLG TG+GKT+T++ +IE + +P +++A
Sbjct: 10  FELVSKYQPAGDQPEAINQLVDGVVGGKKAQILLGATGTGKTYTISNLIEKVNKPTLIIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IV++SVSCI+G+GS   Y + +V ++ G  +++ +L+  LV  Q++R 
Sbjct: 130 SATSSLLERNDVIVIASVSCIFGLGSPFEYQKQVVSIRQGAELDRNQLIRDLVSIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG+++E I E   LTG+ +   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDEVERIREVNALTGEVLGETEHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK EL+ RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFVTNDEHMEHAVANIKAELEQRLAVLRNENKLLEAQRLEQRTNYDIEMMLEMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ PED L+  DESHVT+PQI GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRKEGEPPYTLLDFFPEDFLIVADESHVTMPQIRGMYNGDRARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       I VSATPG +E EQ   +I +QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRLEEFEKHVNQIIYVSATPGPYEYEQTDTVI-QQIIRPTGLLDPVIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 429 VRPIMGQIDDLVGEINERVEKDQRVFVTTLTKKMAEDLTDYFKELGIKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 489 RTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD +T S++LA+DET+RRR  Q ++N++H I P+++ ++I ++I  I  E 
Sbjct: 549 NEEGKVIMYADKVTDSMRLAMDETSRRRTIQQKYNEEHGIVPKTIIKEIRDLI-SITKES 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  ++      ++K++    L  L K+M  AA  L+FE AA +RD I  LK+S
Sbjct: 608 EDDTKEAVQVSYEEMTKEEKDTLLMKLEKEMKDAAKALDFETAANVRDMILELKAS 663


>gi|331090556|ref|ZP_08339408.1| UvrABC system protein B [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330403120|gb|EGG82682.1| UvrABC system protein B [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 668

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/655 (54%), Positives = 480/655 (73%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL+KG     + Q LLGVTGSGKTFTMA VI+ + RP +++A
Sbjct: 10  FELISEYAPTGDQPQAIEQLVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLNRPTLIIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID++RH
Sbjct: 70  HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E+++ L++ QY R 
Sbjct: 130 SATAALSERRDVIIVASVSCIYGLGSPIDYQEMVISLRPGMIKDRDEVVAKLIEIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV-ETIKI 379
           DI   RGTFRV GD +EIFP+  E+ A RV  FG+++E I+E   LTG+ I+NV   + I
Sbjct: 190 DIDFKRGTFRVRGDVLEIFPAISEEYAIRVEFFGDEVERITEIDVLTGE-IKNVLNHVAI 248

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SHYV  +  +  A K I+EEL+ R+   + E +LLEAQR+ +R  +D+EM++ TG C
Sbjct: 249 FPASHYVVSKENMEKATKAIEEELEERIRYFKGEDKLLEAQRISERTNFDIEMMKETGFC 308

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LTG   G+PP TL +Y P+D L+ +DESH TIPQI+GMY GD  RK+TL +
Sbjct: 309 SGIENYSRHLTGLKEGQPPHTLIDYFPDDFLIMIDESHKTIPQIAGMYAGDQSRKSTLVD 368

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS  DNRPL FEE+       + VSATPG +E E+ + +  +QIIRPTGL+DP V
Sbjct: 369 YGFRLPSAKDNRPLNFEEFESKINQILFVSATPGEYE-EKNELLRADQIIRPTGLLDPEV 427

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  E+N    +  ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ TL
Sbjct: 428 EVRGVEGQIDDLVGEVNKEIAKKNKVLVTTLTKRMAEDLTDYMRELGIRVKYLHSDIDTL 487

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAA
Sbjct: 488 ERTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAA 547

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN    VI+YADT+T S++ AI ET RRR+ Q+ +N++H I PQ+VK+ + ++I   + +
Sbjct: 548 RNAEGHVIMYADTMTDSMKNAIRETERRRKVQMAYNEEHGITPQTVKKAVRDLIS--ISK 605

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             A+  + ++    S+S+ + +  +K + KQM  AA  LNFE AA++RD++  LK
Sbjct: 606 KVASEELQMEKDPESMSRSELEKLIKDMTKQMKKAAAELNFEMAAQVRDKLVELK 660


>gi|69248957|ref|ZP_00604830.1| Excinuclease ABC, B subunit [Enterococcus faecium DO]
 gi|257878495|ref|ZP_05658148.1| excinuclease ABC [Enterococcus faecium 1,230,933]
 gi|257884374|ref|ZP_05664027.1| excinuclease ABC [Enterococcus faecium 1,231,501]
 gi|257889305|ref|ZP_05668958.1| excinuclease ABC [Enterococcus faecium 1,231,410]
 gi|257894318|ref|ZP_05673971.1| excinuclease ABC [Enterococcus faecium 1,231,408]
 gi|258615979|ref|ZP_05713749.1| excinuclease ABC subunit B [Enterococcus faecium DO]
 gi|260560084|ref|ZP_05832262.1| excinuclease ABC [Enterococcus faecium C68]
 gi|261207428|ref|ZP_05922114.1| excinuclease ABC [Enterococcus faecium TC 6]
 gi|289566472|ref|ZP_06446897.1| excinuclease ABC, B subunit [Enterococcus faecium D344SRF]
 gi|293557297|ref|ZP_06675843.1| excinuclease ABC, B subunit [Enterococcus faecium E1039]
 gi|293560169|ref|ZP_06676671.1| excinuclease ABC, B subunit [Enterococcus faecium E1162]
 gi|293568102|ref|ZP_06679439.1| excinuclease ABC, B subunit [Enterococcus faecium E1071]
 gi|294616497|ref|ZP_06696278.1| excinuclease ABC, B subunit [Enterococcus faecium E1636]
 gi|314939958|ref|ZP_07847158.1| excinuclease ABC subunit B [Enterococcus faecium TX0133a04]
 gi|314942567|ref|ZP_07849401.1| excinuclease ABC subunit B [Enterococcus faecium TX0133C]
 gi|314947465|ref|ZP_07850880.1| excinuclease ABC subunit B [Enterococcus faecium TX0082]
 gi|314952489|ref|ZP_07855490.1| excinuclease ABC subunit B [Enterococcus faecium TX0133A]
 gi|314992414|ref|ZP_07857840.1| excinuclease ABC subunit B [Enterococcus faecium TX0133B]
 gi|314996254|ref|ZP_07861313.1| excinuclease ABC subunit B [Enterococcus faecium TX0133a01]
 gi|68194330|gb|EAN08843.1| Excinuclease ABC, B subunit [Enterococcus faecium DO]
 gi|257812723|gb|EEV41481.1| excinuclease ABC [Enterococcus faecium 1,230,933]
 gi|257820212|gb|EEV47360.1| excinuclease ABC [Enterococcus faecium 1,231,501]
 gi|257825665|gb|EEV52291.1| excinuclease ABC [Enterococcus faecium 1,231,410]
 gi|257830697|gb|EEV57304.1| excinuclease ABC [Enterococcus faecium 1,231,408]
 gi|260073919|gb|EEW62243.1| excinuclease ABC [Enterococcus faecium C68]
 gi|260078319|gb|EEW66024.1| excinuclease ABC [Enterococcus faecium TC 6]
 gi|289161737|gb|EFD09612.1| excinuclease ABC, B subunit [Enterococcus faecium D344SRF]
 gi|291589184|gb|EFF20995.1| excinuclease ABC, B subunit [Enterococcus faecium E1071]
 gi|291590645|gb|EFF22373.1| excinuclease ABC, B subunit [Enterococcus faecium E1636]
 gi|291600549|gb|EFF30855.1| excinuclease ABC, B subunit [Enterococcus faecium E1039]
 gi|291605841|gb|EFF35273.1| excinuclease ABC, B subunit [Enterococcus faecium E1162]
 gi|313589576|gb|EFR68421.1| excinuclease ABC subunit B [Enterococcus faecium TX0133a01]
 gi|313593049|gb|EFR71894.1| excinuclease ABC subunit B [Enterococcus faecium TX0133B]
 gi|313595395|gb|EFR74240.1| excinuclease ABC subunit B [Enterococcus faecium TX0133A]
 gi|313598671|gb|EFR77516.1| excinuclease ABC subunit B [Enterococcus faecium TX0133C]
 gi|313640792|gb|EFS05372.1| excinuclease ABC subunit B [Enterococcus faecium TX0133a04]
 gi|313646015|gb|EFS10595.1| excinuclease ABC subunit B [Enterococcus faecium TX0082]
          Length = 664

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/656 (53%), Positives = 471/656 (71%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL+ G+   +K Q+LLG TG+GKT+T++ +IE + +P +++A
Sbjct: 10  FELVSKYQPAGDQPEAINQLVDGVVGGKKAQILLGATGTGKTYTISNLIEKVNKPTLIIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IV++SVSCI+G+GS   Y + +V ++ G  +++ +L+  LV  Q++R 
Sbjct: 130 SATSSLLERNDVIVIASVSCIFGLGSPFEYQKQVVSIRQGAELDRNQLIRDLVSIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG+++E I E   LTG+ +   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDEVERIREVNALTGEVLGETEHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK EL+ RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFVTNDEHMEHAVANIKAELEQRLTVLRNENKLLEAQRLEQRTNYDIEMMLEMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ PED L+  DESHVT+PQI GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRKEGEPPYTLLDFFPEDFLIVADESHVTMPQIRGMYNGDRARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       I VSATPG +E EQ   +I +QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRLEEFEKHVNQIIYVSATPGPYEHEQTDTVI-QQIIRPTGLLDPVIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 429 VRPIMGQIDDLVGEINERVEKDQRVFVTTLTKKMAEDLTDYFKELGIKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 489 RTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD +T S++LA+DET+RRR  Q ++N++H I P+++ ++I ++I  I  E 
Sbjct: 549 NEEGKVIMYADKVTDSMRLAMDETSRRRTIQQKYNEEHGIVPKTIIKEIRDLI-SITKES 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  ++      ++K++    L  L K+M  AA  L+FE AA +RD I  LK+S
Sbjct: 608 EDDTKEAVQVSYEEMTKEEKDTLLMKLEKEMKDAAKALDFETAANVRDMILELKAS 663


>gi|308071042|ref|YP_003872647.1| UvrABC system protein B (UvrB protein) [Paenibacillus polymyxa
           E681]
 gi|305860321|gb|ADM72109.1| UvrABC system protein B (UvrB protein) [Paenibacillus polymyxa
           E681]
          Length = 663

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/655 (54%), Positives = 486/655 (74%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+++ P GDQP AI +L++GI   +K Q LLG TG+GKTFT+A+ I  + RP +V+A
Sbjct: 11  FEIQSEFQPQGDQPQAIFELVEGIAEGKKHQTLLGATGTGKTFTIAQTIAKLNRPTLVIA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP+N+V+YFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID++RH
Sbjct: 71  HNKTLAAQLASEFKEFFPNNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSSINEEIDKLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+GS + YS +++ L++G    + ++LS LV  QY+R 
Sbjct: 131 SATSSLFERRDVIIVASVSCIYGLGSPKEYSSLLLSLRVGMEKPRNQILSRLVDIQYQRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +RGTFRV GD +EIFP+   + A RV +FG++IE I+E   LTG+ I   + I I+
Sbjct: 191 DINFVRGTFRVRGDVVEIFPASHGEHAIRVELFGDEIERITEINVLTGELIGERDHIAIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT   T+  A+  I+ EL+ RL EL+++G+LLEAQRLEQR  YD+EM++  G C 
Sbjct: 251 PASHFVTHEDTMKVALVNIERELEERLAELKEQGKLLEAQRLEQRTRYDIEMMKEVGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS  LT R  G  P TL +Y P+D L+ +DESHVT+PQI  MY GD  RK  L E+
Sbjct: 311 GVENYSGPLTFRERGATPYTLMDYFPDDMLIVIDESHVTLPQIRAMYNGDQARKNVLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       I VSATPG +E+E+C+  +V+QIIRPTGL+DP +E
Sbjct: 371 GFRLPSALDNRPLKFEEFEDKVSQIIYVSATPGPYEMEKCE-TMVQQIIRPTGLLDPIIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R ++ Q++D+  EI L  ++  R+L+T LTK+M+EDLT+YL E  I+VRYMHSE+KTLE
Sbjct: 430 VRPSKGQIDDLISEIRLRIEREERVLVTTLTKKMSEDLTDYLKEVGIKVRYMHSEIKTLE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ I+RDLRLG FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RMAILRDLRLGTFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+Y D IT S+  A+ ET RRR  Q+++N++H I PQ++++KI +VI+   +  
Sbjct: 550 NSDGRVIMYGDKITDSMDKALKETERRRAIQIQYNEEHGITPQTIRKKIRDVIEATKV-- 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A + N  +  +   LSKK+ ++ ++ L  +M  AA NL FE AA +RD +  L++
Sbjct: 608 AESKNDYLPNETGKLSKKERQSLIQRLEAEMKDAAKNLQFERAAELRDALLELRA 662


>gi|270260806|ref|ZP_06189079.1| UvrABC system protein B [Serratia odorifera 4Rx13]
 gi|270044290|gb|EFA17381.1| UvrABC system protein B [Serratia odorifera 4Rx13]
          Length = 670

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/659 (55%), Positives = 468/659 (71%), Gaps = 5/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHSDFKPAGDQPEAIRKLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+S++NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  E Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPELYLKMMLHLTKGMIIDQRSILRRLTELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+  +++A R+ +F  ++E +S F PLTGQ  + V+   IY
Sbjct: 185 DQAFQRATFRVRGEVIDIFPAESDELALRIELFDEEVERLSLFDPLTGQIEQVVQRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  +  AM+ IK +L  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKSHYVTPRERILQAMEEIKVDLAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR+ GEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRSEGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGDDIIDQVVRPTGLLDPIVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI        R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVTTQVDDLLSEIRKRVAVKERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N+N K ILY D IT S+  AI ET RRR KQ   N+++ I P+ + +K+ +++    P  
Sbjct: 545 NLNGKAILYGDRITDSMARAIGETERRRVKQQAFNEENGIVPKGLNKKVSDILQLGQPGN 604

Query: 738 LEDAATTNISID--AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                    + +  AQ   L+ K     ++ L  QM+  A NL FE AA +RDEI +L+
Sbjct: 605 RSKGRGKGKAAESAAQYQHLTPKALDQKIRELEAQMYTHAQNLEFELAAGLRDEIHQLR 663


>gi|168210416|ref|ZP_02636041.1| excinuclease ABC, B subunit [Clostridium perfringens B str. ATCC
           3626]
 gi|170711521|gb|EDT23703.1| excinuclease ABC, B subunit [Clostridium perfringens B str. ATCC
           3626]
          Length = 659

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/663 (53%), Positives = 470/663 (70%), Gaps = 16/663 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+ + P+GDQP AI  L++ I +  + Q LLGVTGSGKTFTMA +IE  Q+P +++A
Sbjct: 4   FKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  L++ QY+R 
Sbjct: 124 SATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD+++I PS       R+  FG++I+ I EF  LTG  I   + + I 
Sbjct: 184 DIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHVSIT 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+     TL  +++ I++EL+ RL  L  E ++LEAQRL+QR  YD+EM+   G CQ
Sbjct: 244 PASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMGYCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+  MY GD  RK +L E+
Sbjct: 304 GIENYSRILDGRIPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSLVEF 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+F E+       + VSATPG +EL+  + I+ EQIIRPTGL+DP +E
Sbjct: 364 GFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSE-IVAEQIIRPTGLLDPVIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+Y EI    Q+G R+L+T LTKRMAEDLT+YL + N++  YMHS++ TLE
Sbjct: 423 IRPIQGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIR+LRLG+ DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+YAD ITKS+  +I ET RRR  Q+E+N++HNI P +V + + ++I+      
Sbjct: 543 NSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIE------ 596

Query: 741 AATTNISIDAQQLSLSKKKGKAH-------LKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              T +S + +      KK           ++   ++M  AA NL FE AA +RD IK L
Sbjct: 597 --ATKVSEEKENYETEVKKAAKKDIPVEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDL 654

Query: 794 KSS 796
           K +
Sbjct: 655 KEN 657


>gi|317495353|ref|ZP_07953723.1| excinuclease ABC [Gemella moribillum M424]
 gi|316914775|gb|EFV36251.1| excinuclease ABC [Gemella moribillum M424]
          Length = 665

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/655 (54%), Positives = 462/655 (70%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q+ Y P GDQ  AI +L +G+++ EK Q LLG TG+GKTFT+A +++ + +P +V+A
Sbjct: 10  FDLQSSYEPKGDQVNAIRELTEGLNNGEKYQTLLGATGTGKTFTIANIVKNVGKPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY+E K FFP+N VEYFVSYYDY+QPEAYVP TDTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYNELKEFFPNNRVEYFVSYYDYFQPEAYVPSTDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL +R+D I+VSSVSCIYG+GS E YS +++ L++GD + + ++L  L+  QY R 
Sbjct: 130 SATSSLFDRDDVIIVSSVSCIYGLGSPEEYSSLVLSLRVGDEINRNKILEKLINIQYMRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  IRGTFRV GD IEIFP+   + + R+ MFG++IE I E   LTG+ +  +  I IY
Sbjct: 190 DIDFIRGTFRVRGDVIEIFPASRSENSVRIEMFGDEIERIREINSLTGEVLSELNHIAIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+V        A+K I+ EL+ RL     E +LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 250 PASHFVAGEEKTKEAIKRIRAELEDRLKVFNLENKLLEAQRLEQRTNYDLEMMEEMGFCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R PG  P TL +Y P+D LL VDESHVT+PQ+ GM+ GD  RK  L +Y
Sbjct: 310 GIENYSLHLTLREPGSTPYTLLDYFPKDWLLVVDESHVTLPQVRGMFNGDRARKQVLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL + E+       I VSATPG +ELE     I EQIIRPTGL+DP ++
Sbjct: 370 GFRLPTALDNRPLNYTEFENKLNQAIFVSATPGDYELEHSSK-ITEQIIRPTGLLDPIID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV D+  E     ++G R+L+T LTK+MAE LT YL E  ++V Y+HS++KTLE
Sbjct: 429 IRPVSDQVFDITKEAEKIIEKGERVLITTLTKKMAEALTAYLKENGLKVEYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLGKFD+LVGINLLREGLDIPE  LVAILDADKEGFLR   +L+QTIGRAAR
Sbjct: 489 RTEIIRNLRLGKFDILVGINLLREGLDIPEVSLVAILDADKEGFLRGDKALLQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S++ AIDET RRRE Q+ +N++H I PQ++   I  + D I  + 
Sbjct: 549 NANGRVIMYADNITRSMRKAIDETNRRREIQMAYNEEHGITPQTI---IKGIRDSISAKK 605

Query: 741 AATTNISID-AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               + S++ AQ  +++    + HL  L ++M  AA   +FE AA +RD I  LK
Sbjct: 606 EVLPDESVELAQDTNITDDNIEEHLAELEQEMFAAAGKFDFERAAVLRDTIAELK 660


>gi|325111226|ref|YP_004272294.1| excinuclease ABC subunit B [Planctomyces brasiliensis DSM 5305]
 gi|324971494|gb|ADY62272.1| Excinuclease ABC subunit B [Planctomyces brasiliensis DSM 5305]
          Length = 689

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/654 (53%), Positives = 478/654 (73%), Gaps = 4/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +++ P+GDQP AI  L +G+   ++ Q+LLGVTGSGKTFTMA VI+ MQRP +V++
Sbjct: 4   FQIASEFQPAGDQPKAIESLSRGLEEGKRNQVLLGVTGSGKTFTMANVIQKMQRPTLVLS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EF+ FFP+NAV YFVSYYDYYQPEAY+P+ D YIEK++SIN++IDR+R 
Sbjct: 64  HNKTLAAQLYAEFREFFPNNAVTYFVSYYDYYQPEAYIPQRDIYIEKDASINDEIDRLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT +L+ R D IVV+SVSCIYG+GS + Y  M++ L++G+ V++ +LL  LV   Y+R 
Sbjct: 124 LATSALVSRRDVIVVASVSCIYGLGSPKDYLDMMIPLQVGEQVDRDDLLLRLVDIHYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD IE++P++ E+ A+R+ ++G++IE +S   P++G+  +  + I IY
Sbjct: 184 DFQRARGKFRVRGDVIELWPAY-EEFAYRIELWGDEIETLSIIDPVSGETHKIHKDIYIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V P+  ++ AM  I+EEL  RL E   +G+LLE QRL  R  YD+E+L+ TG C 
Sbjct: 243 PAKHFVLPQSRIDAAMVEIEEELNSRLEEFRTQGKLLEMQRLSARTRYDMELLKETGFCP 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR PG+PP TL+++ P+D L+F+DESHVT+PQ+  MY GD  RK +L E+
Sbjct: 303 GIENYSRALSGRKPGQPPYTLYDFFPDDFLMFIDESHVTLPQVRAMYAGDRSRKESLVEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP  MDNRPL FEEWN  R   + VSATP  WEL+Q +G IVEQIIRPTGLVDP + 
Sbjct: 363 GFRLPMAMDNRPLTFEEWNKRRGQVVFVSATPADWELDQSEGEIVEQIIRPTGLVDPLIH 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I  AR QV+ + ++I     +G R L+T LTKR++EDLT YL E  I+  ++HSE+  +E
Sbjct: 423 IVPARRQVQHLIEQIRERTARGERTLVTTLTKRLSEDLTGYLQEEGIKCAWLHSELDAIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+R+LR G  D LVG+NLLREG+D+PE  LVAILDADKEGFLR++TSLIQTIGR+AR
Sbjct: 483 RVEILRELREGVHDALVGVNLLREGIDLPEVSLVAILDADKEGFLRNETSLIQTIGRSAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN++VILYADT+T+S++ AI ET RRRE QLE+N+KH I P+++++ I   I+  L   
Sbjct: 543 NVNAEVILYADTMTESMENAIGETNRRRELQLEYNQKHGITPETIRKAIRRGIEEELEAR 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                +S  + +     ++   +L+ L  +M  AA+NL FE AA +RD+I +LK
Sbjct: 603 QIVQQVSGASDETQYVTQE---YLQELEAEMLKAAENLEFERAAELRDQIMKLK 653


>gi|294628749|ref|ZP_06707309.1| excinuclease ABC, B subunit [Streptomyces sp. e14]
 gi|292832082|gb|EFF90431.1| excinuclease ABC, B subunit [Streptomyces sp. e14]
          Length = 708

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/695 (52%), Positives = 477/695 (68%), Gaps = 43/695 (6%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AIA+L + I + EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 4   FEVVSPYQPSGDQPQAIAELARRIQAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE+++R+RH
Sbjct: 64  PNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ + Y   +V L++GD V++ ELL   V  QY R 
Sbjct: 124 SATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLRVGDEVDRDELLRRFVDIQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ I + + + ++
Sbjct: 184 DLAFSRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEIISDDQQLYVF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I++EL  RL ELEK+G+LLEAQRL  R TYD+EML   G+C 
Sbjct: 243 PASHYVAGPERMERAVNGIEKELGERLTELEKQGKLLEAQRLRMRTTYDIEMLRQIGTCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS +   R PG PP TL +Y P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 303 GVENYSMHFDDRAPGTPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G  VEQIIRPTGLVDP V 
Sbjct: 363 GFRLPSALDNRPLKWEEFQERIGQTVYLSATPGQYELSRSDG-QVEQIIRPTGLVDPEVV 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+VRY+HS+V TL 
Sbjct: 422 VKPTEGQIDDLVHEIRARTEKDERVLVTTLTKKMAEDLTDYFLELGIQVRYLHSDVDTLR 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 482 RIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT +++ AIDET RRREKQ+ +NK H I+PQ +++KI +++  I  E+
Sbjct: 542 NVSGQVHMYADKITPAMEKAIDETNRRREKQIAYNKAHGIDPQPLRKKINDIVAQIAREE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQ------------------------------ 770
             T  +     + +   K  KA + +L  Q                              
Sbjct: 602 VDTEQLLGTGYRKTKDGKGAKAPVPALGDQAVKGGKGAKAGKSAKGKAAETVPTDRPAAQ 661

Query: 771 -----------MHLAADNLNFEEAARIRDEIKRLK 794
                      M  AA  L FE AAR+RDE+  +K
Sbjct: 662 LAEQIEQMTERMRAAAAELQFEVAARLRDEVSEMK 696


>gi|298528342|ref|ZP_07015746.1| excinuclease ABC, B subunit [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511994|gb|EFI35896.1| excinuclease ABC, B subunit [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 664

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/662 (53%), Positives = 473/662 (71%), Gaps = 4/662 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F + ++Y P GDQ  AI  L++ +      Q+LLGVTGSGKTFTMA VI    RPA+
Sbjct: 1   MTAFNLVSEYTPQGDQVEAIEHLVQNLDQGLDHQVLLGVTGSGKTFTMANVIARSNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           VMAPNK LAAQLY+EF+  FP NAVEYFVSYYDYYQPEAY+PRTDTYIEK+SSIN+ ID+
Sbjct: 61  VMAPNKTLAAQLYNEFRLLFPENAVEYFVSYYDYYQPEAYLPRTDTYIEKDSSINDDIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+AT +LL R D ++V+SVSCIYG+GS E YS+MI+ L+ G +++  EL++ LV+ QY
Sbjct: 121 LRHAATHALLTRRDVLIVASVSCIYGLGSPEYYSKMIIPLEEGQTMDMDELMARLVEVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D    RGTFRV GD +EI P++  + A R+  FG+ +E + E  PLTG+    ++  
Sbjct: 181 ERNDYDFHRGTFRVRGDVLEIIPAYRMEQALRIEFFGDTVESLFETDPLTGEIKSRLKKT 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SHYV+ +  L  AM  I++EL+ RL   +++  L+EAQRLEQR   DLEM++  G
Sbjct: 241 VIYPGSHYVSDQDNLQRAMNDIRDELRHRLNWFQEQNMLVEAQRLEQRTQLDLEMIQEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L GR  G+PP  L +Y P+D LLF+DESH+TIPQ+ GMY GD  RK TL
Sbjct: 301 YCNGIENYSRHLDGRRQGQPPACLLDYFPDDYLLFIDESHITIPQVGGMYNGDLSRKKTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS +DNRPL F+E+      T+ VSATPG WE+++ QG++ EQIIRPTGLVDP
Sbjct: 361 VDFGFRLPSALDNRPLSFDEFQERMGQTVYVSATPGPWEMDKSQGVLAEQIIRPTGLVDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    Q++D+ +E     +   R+L+T LTKRMAEDLT+YL ER +R +Y+HS++ 
Sbjct: 421 EIEVRPTHGQMDDLLNECLQRQENDQRVLVTTLTKRMAEDLTDYLQERGVRSKYLHSDID 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+ II+ LR G+F VLVGINLLREGLDIPE  LV+ILDADKEGFLRS  SLIQT GR
Sbjct: 481 TLERVAIIQALRAGEFYVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTRSLIQTFGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+++VI+YAD +T S++ A+DET RRR KQ E N +H I P S+ +     +   +
Sbjct: 541 AARNVDARVIMYADRVTDSMRRAMDETERRRSKQKEFNLEHGIVPASIVKAGPNTLYE-M 599

Query: 738 LEDAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   + + A+++S      +K +  +KSL ++M   A +L FEEAAR+RD I+ LK
Sbjct: 600 HNQPEPEQMGLAAEEISRYGADPQKLEKEIKSLERKMRKLAQDLEFEEAARVRDRIQDLK 659

Query: 795 SS 796
           ++
Sbjct: 660 NA 661


>gi|168216608|ref|ZP_02642233.1| excinuclease ABC, B subunit [Clostridium perfringens NCTC 8239]
 gi|182381313|gb|EDT78792.1| excinuclease ABC, B subunit [Clostridium perfringens NCTC 8239]
          Length = 659

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/663 (53%), Positives = 470/663 (70%), Gaps = 16/663 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+ + P+GDQP AI  L++ I +  + Q LLGVTGSGKTFTMA +IE  Q+P +++A
Sbjct: 4   FKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  L++ QY+R 
Sbjct: 124 SATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD+++I PS       R+  FG++I+ I EF  LTG  I   + + I 
Sbjct: 184 DIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHVSIT 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+     TL  +++ I++EL+ RL  L  E ++LEAQRL+QR  YD+EM+   G CQ
Sbjct: 244 PASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMGYCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+  MY GD  RK +L E+
Sbjct: 304 GIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSLVEF 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+F E+       + VSATPG +EL+  + ++ EQIIRPTGL+DP +E
Sbjct: 364 GFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSK-VVAEQIIRPTGLLDPVIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+Y EI    Q+G R+L+T LTKRMAEDLT+YL + N++  YMHS++ TLE
Sbjct: 423 IRPIQGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIR+LRLG+ DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+YAD ITKS+  +I ET RRR  Q+E+N++HNI P +V + + ++I+      
Sbjct: 543 NSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIE------ 596

Query: 741 AATTNISIDAQQLSLSKKKGKAH-------LKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              T +S + +      KK           ++   ++M  AA NL FE AA +RD IK L
Sbjct: 597 --ATKVSEEKENYESEVKKAAKKDIPVEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDL 654

Query: 794 KSS 796
           K +
Sbjct: 655 KEN 657


>gi|239931934|ref|ZP_04688887.1| excinuclease ABC subunit B [Streptomyces ghanaensis ATCC 14672]
 gi|291440302|ref|ZP_06579692.1| excinuclease ABC subunit B [Streptomyces ghanaensis ATCC 14672]
 gi|291343197|gb|EFE70153.1| excinuclease ABC subunit B [Streptomyces ghanaensis ATCC 14672]
          Length = 716

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/710 (50%), Positives = 487/710 (68%), Gaps = 55/710 (7%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           +++  + +  F++ + Y PSGDQP AIA L + I + EK  +LLG TG+GK+ T A +IE
Sbjct: 4   VSHIERTVAPFEVVSSYRPSGDQPTAIADLARRIEAGEKDVVLLGATGTGKSATTAWMIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 64  KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V L++GD +++ +LL 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLRVGDEIDRDQLLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD++EIFP + E++A R+ MFG++IE +S  +P+TG+ 
Sbjct: 184 RFVDIQYTRNDMAFTRGTFRVRGDTVEIFPVY-EELAVRIEMFGDEIEALSTLHPVTGEI 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I + + + ++  SHYV     +  A+  I++EL  RL ELEK+G+LLEAQRL  R TYD+
Sbjct: 243 ISDDQQLYVFPASHYVAGPERMERAVNDIEKELVERLAELEKQGKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML   G+C  +ENYS +  GR PG PP TL +Y P+D LL +DESHVT+PQI  MY GD
Sbjct: 303 EMLRQIGTCSGVENYSMHFDGRLPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G +VEQIIR
Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFQERVGQTVYLSATPGQYELSRSDG-VVEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+VR
Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRTRVEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R+LR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS
Sbjct: 482 YLHSDVDTLRRVELLRELRSGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +NK + I+PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQIAYNKANGIDPQPLRKKIN 601

Query: 731 EVIDPILLEDAATTNISIDAQQL--SLSKKKGK--------------------------- 761
           +++  I  ED       ID +QL  S  +K GK                           
Sbjct: 602 DIVAQIARED-------IDTEQLLGSGYRKAGKDGGGTRTPVPALGTKAGKGAKAAKGAK 654

Query: 762 -----------------AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                              ++ L  +M  AA +L FE AAR+RDE+  +K
Sbjct: 655 GKAGETAPTDRPAAELAEQIEELTARMRAAAADLQFEIAARLRDEVSEMK 704


>gi|238749841|ref|ZP_04611345.1| UvrABC system protein B [Yersinia rohdei ATCC 43380]
 gi|238711770|gb|EEQ03984.1| UvrABC system protein B [Yersinia rohdei ATCC 43380]
          Length = 694

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/660 (54%), Positives = 470/660 (71%), Gaps = 5/660 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +++ P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +++
Sbjct: 28  LFKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMIL 87

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR
Sbjct: 88  APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 147

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R
Sbjct: 148 LSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSR 207

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ    V    +
Sbjct: 208 NDQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTV 267

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  AM+ IK EL  R   L    +L+E QR+ QR  +DLEM+   G C
Sbjct: 268 YPKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLIEEQRITQRTQFDLEMMNELGYC 327

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL E
Sbjct: 328 SGIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVE 387

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+    +V+Q++RPTGL+DP +
Sbjct: 388 YGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGDEVVDQVVRPTGLLDPLI 447

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + A    R+L+T LTKRMAEDLT+YL E   RVRY+HS++ T+
Sbjct: 448 EVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTDYLGEHGARVRYLHSDIDTV 507

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 508 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 567

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736
           RN+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +K+ +++    P 
Sbjct: 568 RNLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKVGDILQLGQPS 627

Query: 737 LLEDAATTNISI-DAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +          + D     SLS K     ++ L  +M+  A NL FE+AA +RD++ +L+
Sbjct: 628 MRGKGKGRGGKVADTNNYQSLSPKALDQKIRELEAKMYTHAQNLEFEQAAELRDQVHQLR 687


>gi|291562531|emb|CBL41347.1| excinuclease ABC, B subunit [butyrate-producing bacterium SS3/4]
          Length = 663

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/654 (53%), Positives = 470/654 (71%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL+KG     + + LLGVTGSGKTFTMA VI+ + +P +V+A
Sbjct: 4   FELVSEYQPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIQQLNKPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K FFP+NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH
Sbjct: 64  HNKTLAAQLYSEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ERND I+V+SVSCIYG+GS   Y  M++ L+ G   ++ E++  L+  QY R 
Sbjct: 124 SATAALSERNDVIIVASVSCIYGLGSPIDYKNMVISLRPGMEKDRDEVIHKLIDIQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RG+FRV GD +E+FP++    A+R+  FG++++ I E   LTG+    +E + I+
Sbjct: 184 EMDFKRGSFRVRGDVLEVFPAYSGSEAYRIEFFGDEVDRIMEIEALTGEVKAQLEHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +  A + I  E+K ++   + E +LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 244 PASHYVVPKEKMMRATENILAEMKEQVTFFKSEDKLLEAQRIAERTNFDVEMMRETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L G  PG+PP TL +Y P+D L+ VDESH+T+PQ+ GMY GD  RK TL +Y
Sbjct: 304 GIENYSRHLVGSAPGQPPCTLLDYFPDDFLIIVDESHITLPQVRGMYFGDRSRKKTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATP ++E +  + +  EQIIRPTGL+DP + 
Sbjct: 364 GFRLPSALDNRPLNFEEFETHINQMMFVSATPSTYEADH-ELLRAEQIIRPTGLLDPEIS 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  +IL+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ TLE
Sbjct: 423 VRPVEGQIDDLVGEINKEVEKHNKILITTLTKRMAEDLTDYIREAGIRVKYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RAEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD+IT S++ AIDET RRRE Q ++N++H I PQ++K+ + ++I       
Sbjct: 543 NAEGHVIMYADSITDSMRAAIDETNRRREIQQKYNEEHGITPQTIKKAVRDLIAISKAAS 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A+      D +  S+  ++ +   K L K+M  AA  LNFEEAA++RD +K +K
Sbjct: 603 ASEEEFRKDPE--SMDARELEKLAKELTKKMRQAAAELNFEEAAKLRDRMKEVK 654


>gi|299821908|ref|ZP_07053796.1| excision endonuclease subunit UvrB [Listeria grayi DSM 20601]
 gi|299817573|gb|EFI84809.1| excision endonuclease subunit UvrB [Listeria grayi DSM 20601]
          Length = 657

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/658 (55%), Positives = 469/658 (71%), Gaps = 10/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L+ G++   K Q LLG TG+GKTFT++ VI+ + +P +VMA
Sbjct: 5   FELVSKYSPQGDQPKAIEKLVAGLNKGIKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y  M+V L+ G  + + +LL  LV  QY R 
Sbjct: 125 SATASLFERRDVIIIASVSCIYGLGSPEEYGAMLVSLRTGMEIGRDQLLRKLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ I + E + I+
Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEIIGDREHVSIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT R  L  AM  IK ELK RL EL    +LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 245 PASHFVTRRDILEKAMVNIKTELKDRLKELRDNDKLLEAQRLEQRTNYDLEMMEEMGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D  + +DESHVT+PQI  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLALRAPGSTPYTLLDYFPDDFQMVIDESHVTMPQIRAMYNGDQARKQVLIDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +ELE+   +I EQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEKHVNQIMYVSATPGPYELEKNPDVI-EQIIRPTGLLDPVIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ DEI     +  R+L+T LTK+M+EDLT+YL E  ++V+Y+HSEVKTLE
Sbjct: 424 VRPIPGQIDDLMDEIAERVTKNERVLITTLTKKMSEDLTDYLKEAGVKVQYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG +DVLVGINLLREG+D+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGVYDVLVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD  T S+  AI+ET RRRE Q+ +N++H I PQ++K+ I   I   +  +
Sbjct: 544 NENGKVIMYADRYTDSMTNAINETQRRREIQIAYNEEHGITPQTIKKDIRGAITATVAAE 603

Query: 741 AAT---TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                 T+IS       ++K++  A ++ + ++M  AA  L+FE AA +RD +  +K+
Sbjct: 604 EEEAELTDIS------KMTKEERAAFIEEMEREMKQAAKALDFERAAELRDALLEIKA 655


>gi|328881646|emb|CCA54885.1| Excinuclease ABC subunit B [Streptomyces venezuelae ATCC 10712]
          Length = 731

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/696 (52%), Positives = 485/696 (69%), Gaps = 34/696 (4%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++   + +  F++ ++Y PSGDQPAAIA L + I + EK  +LLG TG+GK+ T A +IE
Sbjct: 26  VSKIERSVAPFEVVSEYKPSGDQPAAIADLERRIRAGEKDVVLLGATGTGKSATTAWMIE 85

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 86  KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 145

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V LK+G+ V++ +LL 
Sbjct: 146 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGEEVDRDQLLR 205

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ 
Sbjct: 206 RFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEV 264

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I     + ++  SHYV     +  A+  I+ EL+ RL EL+K+G+ LE+QRL  R TYD+
Sbjct: 265 ISEDRELYVFPASHYVAGPERMERAVNDIERELEGRLAELDKQGKHLESQRLRMRTTYDI 324

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   GSC  IENYS +  GR PG  P TL +Y PED LL +DESHVT+PQI  MY GD
Sbjct: 325 EMMRQIGSCSGIENYSMHFDGREPGSAPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGD 384

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG++EL +  G  VEQIIR
Sbjct: 385 ASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYLSATPGTYELSRGDG-FVEQIIR 443

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++    Q++D+  EI L  ++  R+L+T LTK+MAEDLT+Y  E  I+VR
Sbjct: 444 PTGLVDPEVVVKPTEGQIDDLVHEIRLRTERDERVLVTTLTKKMAEDLTDYFLELGIQVR 503

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADK+GFLRS TS
Sbjct: 504 YLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTS 563

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +N +H I+PQ +++KI 
Sbjct: 564 LIQTIGRAARNVSGQVHMYADRITPAMEQAIDETNRRREKQIAYNTEHGIDPQPLRKKIN 623

Query: 731 EVIDPILLEDAATTNI------------SIDAQQLSLS----KKKGKAH----------- 763
           +++  I  E+  T  +               A   SL+    K KGKA            
Sbjct: 624 DIVATIAREEIDTEELLGTGYRQGKEGKGTKAPVPSLAAHGVKGKGKAGSTVELGDRPAT 683

Query: 764 -----LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                ++ +  +M  AA  L FE AAR+RDE+  LK
Sbjct: 684 ELAAIIEEMTDRMRAAAAELQFEVAARLRDEVGELK 719


>gi|110802378|ref|YP_697624.1| excinuclease ABC subunit B [Clostridium perfringens SM101]
 gi|169344081|ref|ZP_02865067.1| excinuclease ABC, B subunit [Clostridium perfringens C str.
           JGS1495]
 gi|123146341|sp|Q0SW76|UVRB_CLOPS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|110682879|gb|ABG86249.1| excinuclease ABC, B subunit [Clostridium perfringens SM101]
 gi|169297816|gb|EDS79913.1| excinuclease ABC, B subunit [Clostridium perfringens C str.
           JGS1495]
          Length = 659

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/663 (53%), Positives = 469/663 (70%), Gaps = 16/663 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+ + P+GDQP AI  L++ I +  + Q LLGVTGSGKTFTMA +IE  Q+P +++A
Sbjct: 4   FKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  L++ QY+R 
Sbjct: 124 SATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD+++I PS       R+  FG++I+ I EF  LTG  I   + + I 
Sbjct: 184 DIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHVSIT 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+     TL  ++  I++EL+ RL  L  E ++LEAQRL+QR  YD+EM+   G CQ
Sbjct: 244 PASHFAASEETLEKSISIIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMGYCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+  MY GD  RK +L E+
Sbjct: 304 GIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSLVEF 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+F E+       + VSATPG +EL+  + I+ EQIIRPTGL+DP +E
Sbjct: 364 GFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSE-IVAEQIIRPTGLLDPVIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+Y EI    Q+G R+L+T LTKRMAEDLT+YL + N++  YMHS++ TLE
Sbjct: 423 IRPIKGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIR+LRLG+ DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+YAD ITKS+  +I ET RRR  Q+E+N++HNI P +V + + ++I+      
Sbjct: 543 NSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIE------ 596

Query: 741 AATTNISIDAQQLSLSKKKGKAH-------LKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              T +S + +      KK           ++   ++M  AA NL FE AA +RD IK L
Sbjct: 597 --ATKVSEEKENYESEVKKAAKKDIPIEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDL 654

Query: 794 KSS 796
           K +
Sbjct: 655 KEN 657


>gi|18309285|ref|NP_561219.1| excinuclease ABC subunit B [Clostridium perfringens str. 13]
 gi|20141966|sp|Q46323|UVRB_CLOPE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|18143961|dbj|BAB80009.1| excinuclease ABC subunit B [Clostridium perfringens str. 13]
          Length = 659

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/663 (53%), Positives = 470/663 (70%), Gaps = 16/663 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+ + P+GDQP AI  L++ I +  + Q LLGVTGSGKTFTMA +IE  Q+P +++A
Sbjct: 4   FKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  L++ QY+R 
Sbjct: 124 SATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD+++I PS       R+  FG++I+ I EF  LTG  I   + + I 
Sbjct: 184 DIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHVSIT 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+     TL  +++ I++EL+ RL  L  E ++LEAQRL+QR  YD+EM+   G CQ
Sbjct: 244 PASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMGYCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+  MY GD  RK +L E+
Sbjct: 304 GIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSLVEF 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+F E+       + VSATPG +EL+  + I+ EQIIRPTGL+DP +E
Sbjct: 364 GFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSE-IVAEQIIRPTGLLDPVIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+Y EI    Q+G R+L+T LTKRMAEDLT+YL + N++  YMHS++ TLE
Sbjct: 423 IRPIQGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIR+LRLG+ DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+YAD ITKS+  +I ET RRR  Q+E+N++HNI P +V + + ++I+      
Sbjct: 543 NSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIE------ 596

Query: 741 AATTNISIDAQQLSLSKKKGKAH-------LKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              T +S + +      KK           ++   ++M  AA NL FE AA +RD IK L
Sbjct: 597 --ATKVSEEKENYESEVKKAAKKDIPVEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDL 654

Query: 794 KSS 796
           K +
Sbjct: 655 KEN 657


>gi|110799055|ref|YP_694760.1| excinuclease ABC subunit B [Clostridium perfringens ATCC 13124]
 gi|168212778|ref|ZP_02638403.1| excinuclease ABC, B subunit [Clostridium perfringens CPE str.
           F4969]
 gi|123050084|sp|Q0TUD0|UVRB_CLOP1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|110673702|gb|ABG82689.1| excinuclease ABC, B subunit [Clostridium perfringens ATCC 13124]
 gi|170715774|gb|EDT27956.1| excinuclease ABC, B subunit [Clostridium perfringens CPE str.
           F4969]
          Length = 659

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/663 (53%), Positives = 470/663 (70%), Gaps = 16/663 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+ + P+GDQP AI  L++ I +  + Q LLGVTGSGKTFTMA +IE  Q+P +++A
Sbjct: 4   FKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  L++ QY+R 
Sbjct: 124 SATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD+++I PS       R+  FG++I+ I EF  LTG  I   + + I 
Sbjct: 184 DIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHVSIT 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+     TL  +++ I++EL+ RL  L  E ++LEAQRL+QR  YD+EM+   G CQ
Sbjct: 244 PASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMGYCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+  MY GD  RK +L E+
Sbjct: 304 GIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSLVEF 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+F E+       + VSATPG +EL+  + ++ EQIIRPTGL+DP +E
Sbjct: 364 GFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSK-VVAEQIIRPTGLLDPVIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+Y EI    Q+G R+L+T LTKRMAEDLT+YL + N++  YMHS++ TLE
Sbjct: 423 IRPIQGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIR+LRLG+ DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+YAD ITKS+  +I ET RRR  Q+E+N++HNI P +V + + ++I+      
Sbjct: 543 NSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIE------ 596

Query: 741 AATTNISIDAQQLSLSKKKGKAH-------LKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              T +S + +      KK           ++   ++M  AA NL FE AA +RD IK L
Sbjct: 597 --ATKVSEEKENYEDEVKKAAKKDIPVEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDL 654

Query: 794 KSS 796
           K +
Sbjct: 655 KEN 657


>gi|262038457|ref|ZP_06011831.1| excinuclease ABC, B subunit [Leptotrichia goodfellowii F0264]
 gi|261747552|gb|EEY35017.1| excinuclease ABC, B subunit [Leptotrichia goodfellowii F0264]
          Length = 662

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/655 (52%), Positives = 484/655 (73%), Gaps = 7/655 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI ++++ I +    Q+LLGVTGSGKTFT+A VIE + RPA++MA
Sbjct: 8   FKIHSKFQPTGDQPQAIDKIVENIENGITDQILLGVTGSGKTFTVANVIERINRPALIMA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E+K FFP NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SS+N++ID++RH
Sbjct: 68  PNKTLAAQLYNEYKQFFPENAVEYFVSYYDYYQPEAYIMQTDTYIEKDSSVNDEIDKLRH 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R D I+V+SVS IYG+GS E+Y +  + + +    ++ EL+  L+  +Y+R 
Sbjct: 128 AATAALLNRRDVIIVASVSAIYGLGSPEAYKKRSIPIDVSTGFDRNELIKRLISLRYERN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +++ PS+ +D  +R   FG+D+E I+E   LTGQKIR ++ + I 
Sbjct: 188 DIAFERGKFRVKGDVLDLHPSY-QDTGYRFEFFGDDLESIAEINTLTGQKIREIQRLTIM 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY++   +     + IK EL  R+   E++ +LLEAQR++QR  YDLEM+   G C+
Sbjct: 247 PATHYLSTEDS-EKMFESIKSELHDRINFFERQNKLLEAQRIKQRTEYDLEMIAEIGYCK 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSRYLTG+N GE P TL +Y P+D ++F+DESH+++PQI+GMY+GD  RK +L   
Sbjct: 306 GVENYSRYLTGKNEGEAPDTLIDYFPDDMVVFLDESHISVPQINGMYKGDRARKESLVNN 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+    P  + +SATP  +ELEQ +  I+EQ++RPTG+V+P +E
Sbjct: 366 GFRLPSAFDNRPLKFEEFFAKVPQVVYISATPSDYELEQSKEEIIEQLVRPTGIVEPDIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+ DEI +   +  R+L+T LTK+MAE+LT+Y  E  I+V+YMHS++ TLE
Sbjct: 426 IRPTKNQIDDLMDEIKIRTAKKERVLVTTLTKKMAEELTDYYLEFGIKVKYMHSDIDTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR LR G+FDVLVGINLLREGLDIPE  LVAIL+ADKEG+LRS+ SLIQT+GRAAR
Sbjct: 486 RTEIIRGLRKGEFDVLVGINLLREGLDIPEVSLVAILEADKEGYLRSRRSLIQTMGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME-VIDPILLE 739
           NVN +VILYADT+T S++ AIDE  RRRE Q ++N  +NINP++++ +I E ++D  +++
Sbjct: 546 NVNGQVILYADTVTGSMKEAIDEVNRRREVQEKYNIDNNINPRTIEREIAESIVDYEIIK 605

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + +   +  D +  +  +K+    +K L K++  AA+ LNFEEA ++RD++  LK
Sbjct: 606 EDSVDKVKKDYKNQAEIEKE----IKRLNKEIKKAAEELNFEEAIKLRDKMNELK 656


>gi|284031044|ref|YP_003380975.1| excinuclease ABC subunit B [Kribbella flavida DSM 17836]
 gi|283810337|gb|ADB32176.1| excinuclease ABC, B subunit [Kribbella flavida DSM 17836]
          Length = 701

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/688 (52%), Positives = 479/688 (69%), Gaps = 26/688 (3%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           +++  + +   ++  D+ P+GDQPAAI +L + I++ E+  +LLG TG+GKT T+A + E
Sbjct: 4   VSDLQRMVAPLKVVADFEPAGDQPAAIDELERRINAGEQDVVLLGATGTGKTATIAWLAE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +++ PNK LAAQ  +E + FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SS
Sbjct: 64  RIQRPMLILQPNKTLAAQFANELRQFFPENAVEYFVSYYDYYQPEAYVPQTDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D +VV++VSCIYG+GS + Y   ++ +K+GD  ++  LL 
Sbjct: 124 INEEVERLRHSATWSLLTRRDVVVVATVSCIYGLGSADEYLNRMIHVKVGDETDRDGLLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV  QY R D+   RGTFRV GD++E+FP + +++A RV  FG++IE +   +PLTG+ 
Sbjct: 184 KLVGVQYARNDLAGTRGTFRVRGDTLEVFPVY-QELAVRVEFFGDEIERLMTLHPLTGEV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +   + + I A +HYVT    +  A+  I+ EL  RL ELE+ G+LLEAQRL  R TYD+
Sbjct: 243 LSEEDELYIGAATHYVTAPERMEHAIASIEAELADRLAELERGGQLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   G+C  IENYSR+  GR PG  P  L +Y PED LL +DESHVT+PQI GMY GD
Sbjct: 303 EMMRQIGTCSGIENYSRHTDGRAPGTAPHCLLDYFPEDFLLVIDESHVTVPQIGGMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL E+GFRLPS MDNRPLR+EE+      T+ +SATPG +E ++  G  VEQIIR
Sbjct: 363 MSRKRTLVEHGFRLPSAMDNRPLRWEEFLERIGQTVYLSATPGQYEQDKSDGF-VEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DP V ++  + Q++D+  EI L  ++  R+L+T LTK+M+EDLT+YL E  IR R
Sbjct: 422 PTGLIDPEVIVKPTKGQIDDLIHEIRLRVERDERVLVTTLTKKMSEDLTDYLLEMGIRTR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSEV TL R+E++R+LR+G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  S
Sbjct: 482 YLHSEVDTLRRVELLRELRMGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGRS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+  V +YAD IT S++ AIDET RRR KQ+ +N +H ++PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGAVFMYADKITPSMEQAIDETNRRRAKQVAYNLEHGVDPQPLRKKIA 601

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKK----KGKAH--------------------LKS 766
           ++ D +  EDA T  +  + +  S  K      GKA                     ++ 
Sbjct: 602 DITDMLAREDADTAELLGNGRTQSRGKAPVPGGGKAKAGEKAKELAGGMPSSDLAELIQQ 661

Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLK 794
           L  QMH AA  L FE AAR RDEI  LK
Sbjct: 662 LTDQMHNAAAELQFEVAARYRDEISELK 689


>gi|297559941|ref|YP_003678915.1| excinuclease ABC subunit B [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844389|gb|ADH66409.1| excinuclease ABC, B subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 699

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/686 (51%), Positives = 478/686 (69%), Gaps = 28/686 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++  P+GDQP AIA++ + +   E   +LLG TG+GKT T+A  +E +QRP +VM 
Sbjct: 14  FEVISEMTPAGDQPGAIAEISRRVRDGEPHTVLLGATGTGKTATVAWTVEQLQRPTLVMQ 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ  +E +   P+NAVEYFVSYYDYYQPEAYVP++DT+IEK+SSIN++++R+RH
Sbjct: 74  PNKTLAAQFANELRQMLPNNAVEYFVSYYDYYQPEAYVPQSDTFIEKDSSINDEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D IVV+SVSCIYG+G+ + Y   + QL +G  V++ +LL  LV+ QY R 
Sbjct: 134 SATNSLLTRRDTIVVASVSCIYGLGTPQEYVDRMAQLAVGMEVDRDDLLRRLVEMQYSRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD+IEI P + E++A R+ MFG+++E +   +PLTG+ +     + I+
Sbjct: 194 DTAFTRGTFRVRGDTIEIIPVY-EELAIRIEMFGDEVERLLTLHPLTGEVLGESREMFIF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV        A+  I+ EL  RL ELE +G+LLEAQRL  R T+DLEM+   G+C 
Sbjct: 253 PASHYVAGEERTERAIATIEAELGERLAELEAQGKLLEAQRLRMRTTHDLEMMRQLGTCS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GR PG PP TL +Y PED LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 313 GIENYSRHFDGREPGSPPNTLLDYFPEDFLLVLDESHVTVPQIGAMYEGDAARKRTLVEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL++EE+      ++ +SATPG +EL Q  G +VEQ+IRPTGLVDP V 
Sbjct: 373 GFRLPSALDNRPLKWEEFTERIGQSVYLSATPGRYELRQGGGEVVEQVIRPTGLVDPEVL 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+  EI + A++  R+L+T LTK+M+EDLT+Y  E  IRVRY+HSEV TL 
Sbjct: 433 VKPTDGQIDDLVHEIRVRAERDERVLVTTLTKKMSEDLTDYFTELGIRVRYLHSEVDTLR 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 493 RVELLRELRVGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +V +YAD +T S++ AIDET RRR+KQL +N +H I+P  ++++I +++D +  ED
Sbjct: 553 NVAGQVHMYADNVTDSMRAAIDETNRRRDKQLAYNAEHGIDPTPLRKQIADILDTLNRED 612

Query: 741 AATTNI-----------------------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
             T  +                       S D   +  ++  G   ++ L +QMH AA +
Sbjct: 613 VDTEELMATGYRSSGGRGGRAPVPALGERSADVSAMPRAELAGL--IEQLSEQMHQAATD 670

Query: 778 LNFEEAARIRDEIKRLKSSPYFQGLD 803
           L FE AAR+RDEI  LK     +G+D
Sbjct: 671 LQFELAARLRDEIGELKRE--LRGMD 694


>gi|168207435|ref|ZP_02633440.1| excinuclease ABC, B subunit [Clostridium perfringens E str.
           JGS1987]
 gi|170661207|gb|EDT13890.1| excinuclease ABC, B subunit [Clostridium perfringens E str.
           JGS1987]
          Length = 659

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/663 (53%), Positives = 470/663 (70%), Gaps = 16/663 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+ + P+GDQP AI  L++ I +  + Q LLGVTGSGKTFTMA +IE  Q+P +++A
Sbjct: 4   FKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  L++ QY+R 
Sbjct: 124 SATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD+++I PS       R+  FG++I+ I EF  LTG  I   + + I 
Sbjct: 184 DIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHVSIT 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+     TL  +++ I++EL+ RL  L  E ++LEAQRL+QR  YD+EM+   G CQ
Sbjct: 244 PASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMGYCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+  MY GD  RK +L E+
Sbjct: 304 GIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSLVEF 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+F E+       + VSATPG +EL+  + ++ EQIIRPTGL+DP +E
Sbjct: 364 GFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSK-VVAEQIIRPTGLLDPVIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+Y EI    Q+G R+L+T LTKRMAEDLT+YL + N++  YMHS++ TLE
Sbjct: 423 IRPIQGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIR+LRLG+ DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+YAD ITKS+  +I ET RRR  Q+E+N++HNI P +V + + ++I+      
Sbjct: 543 NSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIE------ 596

Query: 741 AATTNISIDAQQLSLSKKKGKAH-------LKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              T +S + +      KK           ++   ++M  AA NL FE AA +RD IK L
Sbjct: 597 --ATKVSEEKENYESEVKKAAKKDIPIEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDL 654

Query: 794 KSS 796
           K +
Sbjct: 655 KEN 657


>gi|302871765|ref|YP_003840401.1| excinuclease ABC, B subunit [Caldicellulosiruptor obsidiansis OB47]
 gi|302574624|gb|ADL42415.1| excinuclease ABC, B subunit [Caldicellulosiruptor obsidiansis OB47]
          Length = 662

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/664 (56%), Positives = 488/664 (73%), Gaps = 18/664 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+GDQP AI  L +GI   EK Q LLGVTGSGKTFTMAKVIE +QRP +V+A
Sbjct: 4   FRLVSDFRPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSINE+ID++RH
Sbjct: 64  HNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +GS E Y  + + L+ G + ++ E++  L++ QY+R 
Sbjct: 124 SATSALFERRDVIIVASVSCIYSLGSPEDYLNLTISLRPGMTKDRDEVIRELIRMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD +E+FP+   D A R+  FG++IE I+EF  +TG+ I     + I+
Sbjct: 184 DVDFRRGRFRVRGDVLEVFPASNTDRAIRIEFFGDEIERITEFDVVTGEIIGRRNHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    L  A+K I+EEL+ RL EL   G+L+EAQRLEQR  YD+EML+  G C+
Sbjct: 244 PASHYVTTAEKLKRAIKSIEEELEQRLNELRSMGKLVEAQRLEQRTRYDIEMLQEMGFCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PG PP TL +Y P+D ++FVDESHVTIPQ+  MY GD  RK  L EY
Sbjct: 304 GIENYSRHLTGRPPGSPPYTLLDYFPKDFIMFVDESHVTIPQVRAMYNGDKARKDALVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I VSATPG +EL++    IVEQIIRPTGLVDP +E
Sbjct: 364 GFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYELKKSSR-IVEQIIRPTGLVDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +   + Q++ +  EI    ++  R+L+T LTK+MAE LT+YL +  IRVRYMHS++ T+E
Sbjct: 423 VHPVQGQIDHLIGEIRKRVEKNQRVLVTTLTKKMAESLTDYLKDVGIRVRYMHSDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ KVI+YAD IT ++Q AIDET RRR+ Q+E+N+K+ I PQ+V++ I ++I+      
Sbjct: 543 NVDGKVIMYADRITNAMQRAIDETNRRRKIQIEYNQKYGIVPQTVRKGIRQIIE------ 596

Query: 741 AATTNISIDAQQL----------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            AT +++ + ++           +++K++ + ++K L ++M   A  L FE+AA++RD+I
Sbjct: 597 -ATVSVAEEEEEKYEVVEKDIIKNMTKEEIEEYIKELEQEMKKFAIELEFEKAAKVRDKI 655

Query: 791 KRLK 794
             LK
Sbjct: 656 FELK 659


>gi|182418218|ref|ZP_02949518.1| excinuclease ABC, B subunit [Clostridium butyricum 5521]
 gi|237666176|ref|ZP_04526163.1| excinuclease ABC, B subunit [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378036|gb|EDT75576.1| excinuclease ABC, B subunit [Clostridium butyricum 5521]
 gi|237658266|gb|EEP55819.1| excinuclease ABC, B subunit [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 657

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/657 (54%), Positives = 472/657 (71%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L+  I++  + Q LLGVTGSGKTFTMA +IE +QRP IV+A
Sbjct: 4   FKIHSKFKPTGDQPQAIEKLIDSINNDHRGQTLLGVTGSGKTFTMANIIERLQRPTIVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G+ + Y ++ + L+ G   E+ E++  LV+ QY+R 
Sbjct: 124 SATSALFERRDVIIVASVSCIYGLGNPDEYKKLTLSLRTGMEKERNEIIKKLVEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GDS++I P+   +   R+  FG++I+ I EF  LTG  I +   + I 
Sbjct: 184 DIDFSRGTFRVRGDSLDIIPASYSNKGIRIEFFGDEIDRIREFDVLTGSIIGDRNHVAIT 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T + T++ A+  I++EL+ RL EL  + +LLEAQRL QR  YD+EM++  G C 
Sbjct: 244 PASHFATSKETVDRAIGKIEDELEERLRELNSQDKLLEAQRLRQRTNYDIEMIKEMGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR+ G PP TL +Y PED L+F+DESHVT+PQ+  MY GD  RK TL +Y
Sbjct: 304 GIENYSRILDGRDSGTPPKTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKNTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+FEE+       + VSATP  +EL+  +  I EQIIRPTGL+DP + 
Sbjct: 364 GFRLPCAYDNRPLKFEEFEKKIKQVVFVSATPSQYELDNSEE-IAEQIIRPTGLLDPEIV 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+Y EIN   ++G R L+T LTKRMAEDLT+YL E  ++  YMHSE+ T+E
Sbjct: 423 IRPVTGQIDDLYGEINKTTERGFRTLVTTLTKRMAEDLTKYLTELGVKTTYMHSEIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II+DLR G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMKIIKDLRTGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N  S+VI+YAD ITKS+  AI ET RRRE Q ++N++H I P ++ + + +VI+   + E
Sbjct: 543 NSESRVIMYADNITKSMNKAIKETERRREIQTKYNEEHGITPTTIIKDVRDVIEATKVAE 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D A        +   L+KK+    +K    +M LAA NL FE AA +RD IK+L S+
Sbjct: 603 DTAEYKTD---ENKKLTKKQRDKLIKEYTNEMMLAAKNLQFERAAELRDIIKQLTSN 656


>gi|302391081|ref|YP_003826901.1| excinuclease ABC subunit B [Acetohalobium arabaticum DSM 5501]
 gi|302203158|gb|ADL11836.1| Excinuclease ABC subunit B [Acetohalobium arabaticum DSM 5501]
          Length = 663

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/660 (55%), Positives = 474/660 (71%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AI +L  G+ +  + Q LLGVTGSGKTFTMA +IE +Q+P +V+A
Sbjct: 4   FELISDYTPCGDQPEAIEKLQAGVETGMQHQTLLGVTGSGKTFTMANLIEQVQKPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFPHNAVEYFVSYY+YYQPEAYVP+TDTYIEK++SINE+IDR+R 
Sbjct: 64  HNKTLAAQLCSEFREFFPHNAVEYFVSYYNYYQPEAYVPQTDTYIEKDASINEEIDRLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT  L ER D I+V+SVSCIYG+GS   Y  +   L+ G   E+KE++  L+  QY+R+
Sbjct: 124 AATSDLFEREDVIIVASVSCIYGLGSPTDYLDLTCSLERGAVKERKEIIRELIYIQYERK 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RG+FRV GD IEI P++ ED  +RV +FG++++ I E   +TG+    +  + IY
Sbjct: 184 DYDLDRGSFRVRGDVIEIHPAY-EDRVYRVELFGDEVDRIREIDSITGEIKEELGGLTIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A+K I+ EL+ RL EL  + +LLEAQRLEQR  YDLEMLE  G CQ
Sbjct: 243 PASHFVTKEEKLKRAIKSIRAELEERLKELRSQDKLLEAQRLEQRTRYDLEMLEEVGFCQ 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D LL +DESH TIPQI GMY GD  RK  L E+
Sbjct: 303 GIENYSRHLADREPGSRPQTLIDYFPDDFLLLIDESHKTIPQIGGMYAGDRSRKEKLVEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+  L    + +SATPG +E E  Q  IVEQIIRPTGLVDP ++
Sbjct: 363 GFRLPSALDNRPLEFEEFESLINQAVYISATPGPYEEEHSQQ-IVEQIIRPTGLVDPKID 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+MAEDLTEYL    ++VRY+HS++ T+E
Sbjct: 422 VRPTEGQIDDLLAEIRKVVERDERVLITTLTKQMAEDLTEYLGSVGVQVRYLHSDIDTIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 482 RLEIIRDLRQGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738
           NVN +VI+Y D +T S+Q AI+ET RRR  Q E N+++ I PQ++ + + EV+ P+  + 
Sbjct: 542 NVNGRVIMYGDKMTDSMQEAIEETNRRRRIQQEFNEENEITPQTIIKPVREVLRPVDMVA 601

Query: 739 EDAA---TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           E++    TT  S +     ++ ++ +  +  L  +M  A+DNL FE AA+IRDEI+ L S
Sbjct: 602 EESNVEYTTEESDERDPEDMTAEEIEKLIIELEAEMEEASDNLEFELAAQIRDEIEELNS 661


>gi|84496576|ref|ZP_00995430.1| excinuclease ABC subunit B [Janibacter sp. HTCC2649]
 gi|84383344|gb|EAP99225.1| excinuclease ABC subunit B [Janibacter sp. HTCC2649]
          Length = 704

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/682 (51%), Positives = 487/682 (71%), Gaps = 30/682 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +D+ P+GDQPAAI  L + I++ ++  +LLG TG+GK+ T A ++E +QRP +VMA
Sbjct: 14  FQVVSDFEPAGDQPAAIKDLTERINAGQQNVVLLGATGTGKSATTAWLVEQVQRPTLVMA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P+NAVEYFVSYYDY+QPEAYVP+TDTYIEK+SSIN++++R+RH
Sbjct: 74  PNKTLAAQLANEFRELLPNNAVEYFVSYYDYFQPEAYVPQTDTYIEKDSSINDEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D IVV+SVSCIYG+G+ + Y   +VQL++GD +++ +LL   V+ QY R 
Sbjct: 134 SATNSLLTRRDVIVVASVSCIYGLGTPQEYVDKMVQLRVGDELDRDDLLRRFVQMQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E++A R+  FG+++++I   +PLTG+ +R+ + + ++
Sbjct: 194 DLAFTRGTFRVRGDTVEIIPMY-EELAVRIEFFGDEVDKIYTLHPLTGEIVRDEQEMYVF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+     +  A+  I+ EL  +L   E +G+LLEAQRL  R TYD+EM+   GSC 
Sbjct: 253 PASHYIAGPERMERAIAGIEHELAEQLKTFESQGKLLEAQRLRMRTTYDIEMMRQVGSCS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L GR  G  P  L +Y PED LL +DESHVT+PQI  MY GD  RK TL ++
Sbjct: 313 GIENYSMHLDGRTAGTAPNCLLDYFPEDFLLVLDESHVTVPQIGAMYEGDASRKRTLVDH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++EE+      T+ +SATPG++E+ Q  G+ VEQIIRPTGL+DP + 
Sbjct: 373 GFRLPSAMDNRPLKWEEFLERIGQTVYLSATPGNYEMAQADGV-VEQIIRPTGLIDPEIV 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EINL A +  R+L+T LTK+MAEDLT+YL ++ +RVRY+HS++ TL 
Sbjct: 432 LKPTKGQIDDLLHEINLRAARNERVLVTTLTKKMAEDLTDYLLDKGVRVRYLHSDIDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LRLG++DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 492 RVELLRELRLGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSARSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD +T S+Q A+DET+RRREKQ+ +N +  ++PQ ++++I ++ D +  ED
Sbjct: 552 NVSGQVHMYADKVTPSMQEAVDETSRRREKQVAYNLERGVDPQPLRKRIADITDMLERED 611

Query: 741 A---------------------------ATTNISIDAQQLSLSKKKGKAHL-KSLRKQMH 772
           A                           A   +++ A +L        A+L + L  QMH
Sbjct: 612 ADTEELLGSGRARSRGKSDGGRGGRGALAADAVTVGAGRLENIAAGDLANLIQELTTQMH 671

Query: 773 LAADNLNFEEAARIRDEIKRLK 794
            AA +L+FE AAR+RDE+  LK
Sbjct: 672 KAAADLHFELAARLRDEVGDLK 693


>gi|154499910|ref|ZP_02037948.1| hypothetical protein BACCAP_03567 [Bacteroides capillosus ATCC
           29799]
 gi|150271508|gb|EDM98765.1| hypothetical protein BACCAP_03567 [Bacteroides capillosus ATCC
           29799]
          Length = 656

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 470/655 (71%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI  L  G+    + Q LLGVTGSGKTFTMAK IE +QRP +V+A
Sbjct: 4   FEVVSEYKPAGDQPQAIEALANGVEMGLQEQTLLGVTGSGKTFTMAKTIEKLQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EFK FFP+N+VEYFVSYYDYYQPEAY+P TDT+IEK+++ N++IDR+R 
Sbjct: 64  HNKTLAAQLCAEFKEFFPNNSVEYFVSYYDYYQPEAYIPHTDTFIEKDAATNDEIDRLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D IVVSSVSCIYG+G  E +++M+V L++G  +E+  LL  LV+ +Y+R 
Sbjct: 124 SATCALLERRDVIVVSSVSCIYGLGEPEDFAKMMVSLRVGMEMERDVLLKRLVEIRYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   R  FRV GD++EI+P++ +D A RV  FG++I+ ISE   +TG  IR +  + I+
Sbjct: 184 DIAFERNMFRVRGDTVEIYPAYWKDSAIRVEFFGDEIDRISEVNAVTGTPIRILNHVPIW 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTP+  ++ A+  I +EL+ R+   E+E +L+EAQRL+QR+ YD+EM++  G C 
Sbjct: 244 PATHYVTPKEKMDAAIGEIYKELEERVAFFERENKLVEAQRLKQRVMYDIEMMQELGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR + GR  G PP TL +Y P+D L+F+DESHVT+PQ+  MY GD  RK TL +Y
Sbjct: 304 GIENYSRVIEGRPAGTPPHTLLDYFPKDFLMFIDESHVTLPQVRAMYNGDHARKTTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+F+E+       I VSATPG +E  +  G +VEQ+IRPTGL+DP +E
Sbjct: 364 GFRLPCAYDNRPLKFDEFEQRVNQVIYVSATPGEYERTRS-GQVVEQVIRPTGLLDPRIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+L+T LTKRMAEDLT YL    I+VRYMH ++ T+E
Sbjct: 423 VRPVEGQIDDLIGEINARTERKERVLVTTLTKRMAEDLTAYLKNAGIKVRYMHHDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RQEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD IT S++ AIDET RRREKQ   NK H I P++V + +  +I+   L  
Sbjct: 543 NADGLVIMYADKITPSMRAAIDETERRREKQDAFNKAHGIVPKTVVKSVRNLIE---LSG 599

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                   D  Q  ++K++    +  L K+M  A+  L FE AA +RD+I +L+ 
Sbjct: 600 EVEETKKFDFNQKQMTKQQRLEAIAKLEKEMKEASKMLEFEYAAILRDKIIKLRG 654


>gi|222150759|ref|YP_002559912.1| excinuclease ABC subunit B [Macrococcus caseolyticus JCSC5402]
 gi|222119881|dbj|BAH17216.1| excinuclease ABC subunit B [Macrococcus caseolyticus JCSC5402]
          Length = 657

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/655 (54%), Positives = 472/655 (72%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI ++++GI   ++ Q LLG TG+GKTFTM+ VIE + +P ++MA
Sbjct: 6   FKIHSDYQPAGDQPDAIEKIVQGIKEGKRYQTLLGATGTGKTFTMSNVIERVGKPTLIMA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 66  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I++SSVSCIYG+G+ E Y  ++V +++G  +E+ +LL  LV  QY R 
Sbjct: 126 SATSALFERDDVIIISSVSCIYGLGNPEEYRDLVVSVRVGMEMERNQLLRKLVDVQYTRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   R+  FG++IE I E   LTG+ ++  E   I+
Sbjct: 186 DIDFRRGTFRVRGDVVEIFPASRDEQCIRIEFFGDEIERIREINYLTGEVLKEREHFAIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ +L +   EG+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 246 PASHFVTREEKMKLAIERIEKELEEQLKKFRDEGKLLEAQRLEQRTNYDLEMMREMGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 306 GIENYSLHLTLRPRGSTPYTLLDYFGDDWLIMMDESHVTVPQVRGMYNGDQARKNVLVDH 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLKFEEFEQKGHQFLYVSATPGPYEIEHTDE-MVEQIIRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R ++ Q++D+ +EI +  ++  R+L+T LTK+M+EDLT YL E  I+V Y+HSE+KTLE
Sbjct: 425 VRPSQHQIDDLIEEIRVRIEKNERVLITTLTKKMSEDLTIYLKEAGIKVNYLHSEIKTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RIEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSQRSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT+S+Q AIDET+RRR  Q  +N++H I P ++ +KI +VI   L  D
Sbjct: 545 NEQGRVIMYADKITESMQFAIDETSRRRSIQEAYNEEHGITPTTINKKIRDVISATLETD 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                +    Q+  L+KK+    ++ L  +M  AA  L+FE A  +RD +  LK+
Sbjct: 605 EEKKPV----QKKKLTKKERARTIEQLEHEMKEAAKALDFERATELRDALFELKA 655


>gi|260893664|ref|YP_003239761.1| excinuclease ABC, B subunit [Ammonifex degensii KC4]
 gi|260865805|gb|ACX52911.1| excinuclease ABC, B subunit [Ammonifex degensii KC4]
          Length = 681

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/666 (53%), Positives = 474/666 (71%), Gaps = 4/666 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F+++ D+ P+GDQP AIA+L++G+    ++Q LLGVTGSGKTFTMA VI  + RP +
Sbjct: 1   MGLFKLRADFAPAGDQPQAIAKLVEGVRKGYRMQTLLGVTGSGKTFTMANVIAQLNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQL SEFK FFP NAVEYF+SYYDYYQPEAY+P+ D YIEK++ INE+ID+
Sbjct: 61  VIAPNKTLAAQLCSEFKEFFPENAVEYFISYYDYYQPEAYLPQADLYIEKDALINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+AT ++LER D IVV+SVSCIY +G+   Y   +V L+ G+  ++  +L  LV+ +Y
Sbjct: 121 LRHAATAAVLERRDVIVVASVSCIYSLGNPVDYRDQVVSLRRGECYDRDSILRKLVRIRY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R +    RG FRV GD +++FP+   + A RV  FG+++E I EF PLTG  +     +
Sbjct: 181 ERTEGDFTRGKFRVRGDVLDVFPASTSERAIRVEFFGDEVERILEFDPLTGDILGERYHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             +  +HYVT    L   +  I+EEL  R+   + +GRLLEAQRLE R  YDLEML   G
Sbjct: 241 SFFPATHYVTAPERLENIIAAIEEELAERVAWFKAQGRLLEAQRLETRTRYDLEMLREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSRYLTGR PGEPP TL +Y P D L+F+DESHVT+PQ+ GMY GD  RK +L
Sbjct: 301 YCKGIENYSRYLTGRAPGEPPYTLLDYFPPDFLVFIDESHVTVPQLHGMYEGDRSRKESL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL+FEE+       I VSATPG +ELE  +  IVEQI+RPTGLVDP
Sbjct: 361 VEYGFRLPSAFDNRPLKFEEFIERVNQVIFVSATPGPYELEHSEQ-IVEQIVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+ +R  + Q++D+  EI     +G R+L+T LTKRMAEDL +YL E  ++VRY+H+++ 
Sbjct: 420 PMVVRPTKGQIDDLLGEIRTRVARGERVLVTTLTKRMAEDLADYLREMGVKVRYLHADID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            LER+ IIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS+ SLIQ  GR
Sbjct: 480 ALERMAIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQIAGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN  VILYAD IT+S++ AI+ET RRR  Q+E+N+KH I P++V++ + EVI+   
Sbjct: 540 AARNVNGLVILYADRITESMRRAIEETERRRRLQIEYNQKHGIVPRTVEKPVREVIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + +       +  ++L  SK K  A   +  +QM  AA +L+FE AA++RD    L++  
Sbjct: 600 VAEEKGV-YEVRPKELPTSKLKSLA--AAYERQMREAAKSLDFELAAQLRDIWLELRAEL 656

Query: 798 YFQGLD 803
             +G++
Sbjct: 657 VARGVE 662


>gi|226324390|ref|ZP_03799908.1| hypothetical protein COPCOM_02171 [Coprococcus comes ATCC 27758]
 gi|225206838|gb|EEG89192.1| hypothetical protein COPCOM_02171 [Coprococcus comes ATCC 27758]
          Length = 691

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/669 (53%), Positives = 479/669 (71%), Gaps = 8/669 (1%)

Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185
           H+S     H+     F+++  Y P+GDQP AIA+L+KG     + Q LLGVTGSGKTFTM
Sbjct: 24  HKSSPQGGHA-----FKLKAPYEPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSGKTFTM 78

Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           A VI+ +Q+P +V+A NK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAYVP +DTYI
Sbjct: 79  ANVIQQLQKPTLVIAHNKTLAAQLYGEFKEMFPDNAVEYFVSYYDYYQPEAYVPSSDTYI 138

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
            K+S+IN++ID++RHSAT +L ERND I+V+SVSCIYG+GS   Y +M++ L+ G   ++
Sbjct: 139 AKDSAINDEIDKLRHSATAALSERNDVIIVASVSCIYGLGSPIDYKEMVISLRPGMIKDR 198

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
            E+L  LV+ QY R D+   RGTFRV GD +EIFP++ E +A+RV  FG++I+ I+E   
Sbjct: 199 DEVLKKLVEIQYDRNDMDFKRGTFRVRGDVVEIFPAYSEKIAYRVEFFGDEIDRITEIDT 258

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           LTG+ +  +  + I+  SHYV  +  +  A++ I+EEL+ ++   + E +LLEAQR+ +R
Sbjct: 259 LTGEVLNVIGHVAIFPASHYVVSKENMERAIREIEEELEQQIRYFKGEDKLLEAQRISER 318

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
             +D+EM+  TG C  IENYSR+LTG+  GEPP TL +Y P+D L+ +DESH TIPQI  
Sbjct: 319 TNFDIEMMRETGFCSGIENYSRHLTGQKAGEPPCTLIDYFPDDFLIMIDESHKTIPQIGA 378

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MY GD  RK TL +YGFRLPS  DNRPL F E+       + VSATPG +E E  + +  
Sbjct: 379 MYHGDQSRKTTLVDYGFRLPSAKDNRPLSFGEFESKIDQVLFVSATPGEYE-ESHELLRA 437

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           EQ+IRPTGL+DP VE+R    Q++D+  E+N    +  ++L+T LTKRMAEDLT+Y+ E 
Sbjct: 438 EQVIRPTGLLDPEVEVRPIEGQIDDLISEVNKETAKKNKVLITTLTKRMAEDLTDYMREL 497

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            IRV+Y+HS++ TLER EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFL
Sbjct: 498 GIRVKYLHSDIDTLERTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFL 557

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS+TSLIQTIGRAARN    VI+YAD +T S+++AIDET RRRE Q+++N++H I PQ++
Sbjct: 558 RSETSLIQTIGRAARNAEGHVIMYADNMTDSMRMAIDETMRRREIQMKYNEEHGITPQTI 617

Query: 726 KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           K+ + ++I   + +  A   + ++    S+S  + +  +K L KQM  AA  LNFE AA 
Sbjct: 618 KKSVRDLIS--ISKKVAAEEMKLEKDPESMSAAELEKLIKKLEKQMKKAAAELNFEAAAE 675

Query: 786 IRDEIKRLK 794
           +RD++  LK
Sbjct: 676 LRDKLIELK 684


>gi|226227359|ref|YP_002761465.1| UvrABC system protein B [Gemmatimonas aurantiaca T-27]
 gi|259710327|sp|C1A4H0|UVRB_GEMAT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226090550|dbj|BAH38995.1| UvrABC system protein B [Gemmatimonas aurantiaca T-27]
          Length = 700

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/663 (53%), Positives = 472/663 (71%), Gaps = 8/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AI +L  G+H  +++Q LLGVTGSGKT TMA VI    RP +V++
Sbjct: 5   FRLHAPFAPAGDQPRAITELSSGLHRGDRIQTLLGVTGSGKTMTMANVIADWGRPTLVLS 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K+FFP+NAVEYF+SYYDYYQPEAYVP +DTYIEK++SINE IDR+R 
Sbjct: 65  HNKTLAAQLYGELKSFFPNNAVEYFISYYDYYQPEAYVPSSDTYIEKDASINEDIDRLRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT SL+ER+D ++VS+VS IYG+G    Y + +V L  G  + + ++L +LV  QY R 
Sbjct: 125 RATSSLMERDDVVIVSTVSAIYGLGDPVQYRERMVALSRGQQIARDDILRALVGIQYLRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P++ E+ A R+ ++G++IE IS+  P+TG+ I  +E + IY
Sbjct: 185 DVAFERGTFRVRGDTVEILPAY-EEQAVRIELWGDEIERISKIDPVTGETIAALERMAIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T RPT+  A   I++EL  RL EL   G+LLEAQRLEQR  +DLEML   G+C 
Sbjct: 244 PAKHFITNRPTIERASMAIRDELATRLAELRMAGKLLEAQRLEQRTQFDLEMLMEIGTCA 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++GR  GE P  L +Y P+D L+ VDESHVT+PQI  MY GD  RK TL +Y
Sbjct: 304 GIENYSRHISGREAGERPACLLDYFPDDYLVVVDESHVTLPQIRAMYNGDRARKLTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+  L P  + VSATPG  EL+  +G++VEQ+IRPTGL+DP +E
Sbjct: 364 GFRLPSALDNRPLVFDEFMSLVPRLVNVSATPGELELQLSEGVVVEQVIRPTGLLDPVLE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + QV+D+  EI    ++G R+L+T LTKRM+EDLT+YL +  +RVRYMHS++  +E
Sbjct: 424 VRPVKGQVDDLLHEIRARERRGERVLVTTLTKRMSEDLTDYLQQMGVRVRYMHSDIDAIE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+R LRLG+FDVLVGINLLREGLD+PE  LVAILDAD+EGFLRS  SLIQTIGRAAR
Sbjct: 484 RMEIVRGLRLGEFDVLVGINLLREGLDMPEVSLVAILDADQEGFLRSDRSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++   ILY D IT S+Q AIDETTRRR  Q EHN+ H I P+ V + + EV     + D
Sbjct: 544 NLHGMAILYGDRITGSMQRAIDETTRRRTIQREHNEAHGIVPRGVTKSVDEVRFITRVAD 603

Query: 741 A-------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           A       A     + ++    S+++ +  +  L   M  AA  L+FE AAR+RD++  +
Sbjct: 604 ARVEREGEAPAPRRLASESAPRSREELETLVGELEIAMREAAVALDFEAAARLRDQLFEV 663

Query: 794 KSS 796
           +++
Sbjct: 664 RTA 666


>gi|302385224|ref|YP_003821046.1| excinuclease ABC, B subunit [Clostridium saccharolyticum WM1]
 gi|302195852|gb|ADL03423.1| excinuclease ABC, B subunit [Clostridium saccharolyticum WM1]
          Length = 661

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/660 (53%), Positives = 472/660 (71%), Gaps = 15/660 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI QL+KG     + Q LLGVTGSGKTFTMA VI+ +QRP +++A
Sbjct: 3   FILHSEYDPTGDQPQAIDQLVKGFQEGNQFQTLLGVTGSGKTFTMANVIQKLQRPTLIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH
Sbjct: 63  HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E++  L+  QY R 
Sbjct: 123 SATAALSERKDVIIVASVSCIYGLGSPIDYQEMVISLRPGMIKDRDEVVHKLIDIQYDRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EIFP++    A+RV  FG+++E I+E   LTG+    +  + I+
Sbjct: 183 DMDFRRGTFRVRGDVVEIFPAYSGSEAYRVEFFGDEVERITEIDTLTGEIRAELGHVAIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  R  +  A + I EELK ++   + E +LLEAQR+ +R  +D+EM++ TG C 
Sbjct: 243 PASHYVVSREKMELAAQTILEELKEQVAYFKSEDKLLEAQRISERTNFDVEMMKETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PG+PP TL +Y P+D L+ VDESH+T+PQ+ GM+ GD  RK TL  +
Sbjct: 303 GIENYSRHLTGGRPGDPPYTLIDYFPDDFLIIVDESHITLPQVRGMFAGDRSRKTTLVNF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATP  +E E  + + VEQIIRPTGL+DP ++
Sbjct: 363 GFRLPSALDNRPLNFEEFESKINQMMFVSATPSVYEAEH-ELLRVEQIIRPTGLLDPEID 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N    +  ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ TLE
Sbjct: 422 VRPVEGQIDDLVSEVNKEISKKNKVLITTLTKRMAEDLTDYMREVGIRVKYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RSEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S+++AI+ET RRR  Q  +N++H I P ++K+ + ++I       
Sbjct: 542 NSEGHVIMYADKVTDSMRVAIEETNRRRAIQQLYNEEHGITPTTIKKSVRDLI------- 594

Query: 741 AATTNISIDAQQ------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A +  +I+ ++       S+  K+ +   K L K+MH AA  LNFEEAAR+RD + ++K
Sbjct: 595 -AISKAAIEEEKDFKKDPESMDAKELEKLAKELTKKMHQAAAELNFEEAARLRDRMVQIK 653


>gi|182624512|ref|ZP_02952295.1| excinuclease ABC, B subunit [Clostridium perfringens D str.
           JGS1721]
 gi|177910320|gb|EDT72701.1| excinuclease ABC, B subunit [Clostridium perfringens D str.
           JGS1721]
          Length = 659

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/663 (53%), Positives = 469/663 (70%), Gaps = 16/663 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+ + P+GDQP AI  L++ I +  + Q LLGVTGSGKTFTMA +IE  Q+P +++A
Sbjct: 4   FKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  L++ QY+R 
Sbjct: 124 SATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD+++I PS       R+  FG++I+ I EF  LTG  I   + + I 
Sbjct: 184 DIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHVSIT 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+     TL  +++ I++EL+ RL  L  E ++LEAQRL+QR  YD+EM+   G CQ
Sbjct: 244 PASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMGYCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+  MY GD  RK +L E+
Sbjct: 304 GIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSLVEF 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+F E+       + VSATPG +EL+  + I+ EQIIRPTGL+DP +E
Sbjct: 364 GFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSE-IVAEQIIRPTGLLDPVIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+Y EI    Q+G R+L+T LTKRMAEDLT+YL + N++  YMHS++ TLE
Sbjct: 423 IRPIHGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIR+LRLG+ DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+YAD ITKS+  +I ET RRR  Q+E+N++HNI P +V + + ++I+      
Sbjct: 543 NSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIE------ 596

Query: 741 AATTNISIDAQQLSLSKKKGKAH-------LKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              T +S + +      KK           ++   ++M  AA NL FE AA +RD IK L
Sbjct: 597 --ATKVSEEKENYEDEVKKAAKKDIPVEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDL 654

Query: 794 KSS 796
           K +
Sbjct: 655 KEN 657


>gi|310644265|ref|YP_003949024.1| excinuclease abc, b subunit [Paenibacillus polymyxa SC2]
 gi|309249216|gb|ADO58783.1| Excinuclease ABC, B subunit [Paenibacillus polymyxa SC2]
          Length = 663

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/655 (54%), Positives = 484/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+++ P GDQP AI +L++GI   +K Q LLG TG+GKT+T+A+ I  + RP +V+A
Sbjct: 11  FEIQSEFQPQGDQPQAIFELVEGIAEGKKHQTLLGATGTGKTYTIAQTIAKLNRPTLVIA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP+N+V+YFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID++RH
Sbjct: 71  HNKTLAAQLASEFKEFFPNNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSSINEEIDKLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+GS + YS +++ L++G    + ++LS LV  QY+R 
Sbjct: 131 SATSSLFERRDVIIVASVSCIYGLGSPKEYSSLLLSLRVGMEKPRNQILSRLVDIQYQRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +RGTFRV GD +EIFP+   + A RV +FG++IE I+E   LTG+ I   E I I+
Sbjct: 191 DINFVRGTFRVRGDVVEIFPASHGENAIRVELFGDEIERITEINVLTGELIGEREHIAIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT   T+  A+  I+ EL+ RL EL+++G+LLEAQRLEQR  YD+EM+   G C 
Sbjct: 251 PASHFVTHEDTMRVALVNIERELEERLAELKEQGKLLEAQRLEQRTRYDIEMMREVGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS  LT R  G  P TL +Y P+D L+ +DESHVT+PQI  MY GD  RK  L E+
Sbjct: 311 GVENYSGPLTFRERGATPYTLLDYFPDDMLIVIDESHVTLPQIRAMYNGDQARKNVLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       I VSATPG +E+E+C   +V+QIIRPTGL+DP +E
Sbjct: 371 GFRLPSALDNRPLKFEEFEDKVNQIIYVSATPGPYEMEKCD-TMVQQIIRPTGLLDPIIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R ++ Q++D+ +EI    ++  R+L+T LTK+MAEDLT+YL E  I+VRYMHSE+KTLE
Sbjct: 430 VRPSKGQIDDLINEIRQRIEREERVLVTTLTKKMAEDLTDYLKEVGIKVRYMHSEIKTLE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ I+RDLRLG FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RMAILRDLRLGTFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+Y D IT S+  AI ET RRR  Q+++N++H I PQ++++KI +VI+    + 
Sbjct: 550 NSDGRVIMYGDKITDSMDKAIKETERRRAIQIQYNEEHGITPQTIRKKIRDVIEAT--KT 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A + N  +  +   LSKK+ ++ ++ L  +M  AA NL FE AA +RD +  L++
Sbjct: 608 AESKNDYLPNETGKLSKKERQSLIQRLEAEMKDAAKNLQFERAAELRDALLELRA 662


>gi|295401557|ref|ZP_06811526.1| excinuclease ABC, B subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109521|ref|YP_003987837.1| excinuclease ABC subunit B [Geobacillus sp. Y4.1MC1]
 gi|294976469|gb|EFG52078.1| excinuclease ABC, B subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214622|gb|ADP73226.1| excinuclease ABC, B subunit [Geobacillus sp. Y4.1MC1]
          Length = 659

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/657 (56%), Positives = 478/657 (72%), Gaps = 6/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AIA+L++GI    K Q LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 5   FELVSAYQPQGDQPQAIAKLVEGIRKGVKHQTLLGATGTGKTFTISNVIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY+R 
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ I   E + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEIIGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL ++G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRLAIENIEKELEERLRELREQGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D L+ VDESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       I VSATPG +ELE     +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPE-VVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R L+T LTK+MAEDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIQERVKRNERTLVTTLTKKMAEDLTDYLKEVGIKVAYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTITKS+++AI+ET RRR  Q  +N++H I PQ+VK++I +VI       
Sbjct: 544 NANGHVIMYADTITKSMEIAINETKRRRAIQEAYNREHGIVPQTVKKEIRDVIRATY--- 600

Query: 741 AATTNISIDAQ--QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA    + DA+     ++KK+ +  +  L K+M  AA  L+FE AA++RD I  LK+
Sbjct: 601 AAEEKETYDAKPSYSKMTKKEREQLIADLEKEMKEAAKALDFERAAQLRDIIFELKA 657


>gi|299143668|ref|ZP_07036748.1| excinuclease ABC subunit B [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518153|gb|EFI41892.1| excinuclease ABC subunit B [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 660

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/655 (54%), Positives = 474/655 (72%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  L+ GI+   K Q LLGVTGSGKTFTMA VIE +Q+P +V+A
Sbjct: 3   FKIHSSYVPTGDQPQAIDGLVDGINKNLKHQTLLGVTGSGKTFTMANVIERVQKPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL SEFK FFP NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++ID++RH
Sbjct: 63  HNKTLAYQLASEFKEFFPDNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G    Y  ++V L+ G   ++ E++  L++ QY R 
Sbjct: 123 SATMSLFERRDVIIVASVSCIYGLGDPIDYENLVVSLRPGMEKDRNEIMKRLIEIQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  +RGTFRV GD +EIFPS   + + RV  FG++I+ ISE   LTG+ +   + + IY
Sbjct: 183 DLNFVRGTFRVRGDILEIFPSWSSENSIRVEFFGDEIDRISEINALTGEVLGYRKHVAIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T    +  A+  I+EEL  R+ EL+ + +LLEAQR+EQR  YD+EML   G C 
Sbjct: 243 PASHFATTEQKVKRAIVTIEEELNERVKELKDQEKLLEAQRIEQRTRYDIEMLSEMGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y P+D L  +DESH T+PQI  MY GD  RK TL +Y
Sbjct: 303 GIENYSRHLSAREAGSRPYTLIDYFPKDFLTIIDESHATVPQIRAMYNGDRSRKQTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  +    I VSATPG +E E  Q   VEQIIRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLKFEEFESIMNQCIYVSATPGPYEKEHEQN-KVEQIIRPTGLLDPVIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+ +EI    ++G R+L+T LTK+MAEDLT++  +  ++V YMHS+V T+E
Sbjct: 422 VRPTKYQIDDLINEIENVKERGERVLITTLTKKMAEDLTDHFKKIGMKVTYMHSDVDTIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGK+DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT GRAAR
Sbjct: 482 RMEIIRDLRLGKYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTAGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ KVI+YAD  TKS++  IDET RRR  Q ++NK++ I P+SV++ I EVI+  +  +
Sbjct: 542 NVDGKVIMYADFETKSMKYTIDETNRRRFIQDKYNKENGIIPKSVEKGIREVIEATVAAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              +  SI+      S K+  A + +L+ +M+ +A+ L+FE AA IRD+I  L++
Sbjct: 602 GVESYSSIN----EFSDKEILAMIDALKNEMYKSAEQLDFERAAEIRDKITELRA 652


>gi|302561243|ref|ZP_07313585.1| excinuclease ABC, B subunit [Streptomyces griseoflavus Tu4000]
 gi|302478861|gb|EFL41954.1| excinuclease ABC, B subunit [Streptomyces griseoflavus Tu4000]
          Length = 716

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/710 (51%), Positives = 484/710 (68%), Gaps = 55/710 (7%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++   + +  F++ + Y P+GDQP AIA L + I + EK  +LLG TG+GK+ T A +IE
Sbjct: 4   VSQIERSVAPFEVVSPYQPNGDQPTAIADLARRIGAGEKDVVLLGATGTGKSATTAWMIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 64  KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V L++GD  ++ ELL 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLRVGDEFDRDELLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ 
Sbjct: 184 RFVDIQYTRNDMAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEI 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I + + + I+  SHYV     L  A+  I++EL  RL +LEK+G+LLEAQRL  R TYD+
Sbjct: 243 ISDDQQLYIFPASHYVAGPERLERAVNDIEKELGERLTDLEKQGKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML   GSC  +ENYS +  GR+PG PP TL +Y P+D LL +DESHVT+PQI  MY GD
Sbjct: 303 EMLRQIGSCSGVENYSMHFDGRSPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G +VEQIIR
Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFQERVGQTVYLSATPGQYELSRSDG-VVEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+VR
Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRTRVEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS
Sbjct: 482 YLHSDVDTLRRVELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +N  + I+PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQVAYNTANGIDPQPLRKKIN 601

Query: 731 EVIDPILLEDAATTNISIDAQQLSLS-----KKKGKA----------------------- 762
           +++  I  ED       ID +QL  S     KK G                         
Sbjct: 602 DIVAQIARED-------IDTEQLLGSGYRQAKKDGGGTKAPVPSLGGKAAKAAKGAKSAK 654

Query: 763 ------------------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                              ++ L  +M  AA +L FE AAR+RDE+  +K
Sbjct: 655 GRAAETVPTDRPAAELTEQIEELTARMRTAAADLQFEIAARLRDEVSEMK 704


>gi|72161600|ref|YP_289257.1| excinuclease ABC subunit B [Thermobifida fusca YX]
 gi|90111057|sp|Q47QN5|UVRB_THEFY RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|71915332|gb|AAZ55234.1| Excinuclease ABC subunit B [Thermobifida fusca YX]
          Length = 701

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/677 (52%), Positives = 483/677 (71%), Gaps = 24/677 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ TD  P+GDQPAAI +L + I       +LLG TG+GKT T+A +IE +QRP +V+ 
Sbjct: 14  FEVVTDMVPAGDQPAAIEELARRIQGGAADTVLLGATGTGKTATVAWLIERLQRPTLVIQ 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ  +E +   PHNAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSINE+++R+RH
Sbjct: 74  PNKTLAAQFANELREMMPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ + Y   +  +++G  +++ ELL  LV+ QY R 
Sbjct: 134 SATTALLTRRDTVVVASVSCIYGLGTPQEYVDRMATVEVGMEIDRDELLRRLVEMQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + +++A R+ MFG++IE +   +P+TG+ +   + + I+
Sbjct: 194 DVAFTRGTFRVRGDTVEIIPVY-DELAVRIEMFGDEIERLMTLHPITGEVLGESDRVYIF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I+ EL+ RL ELE  G+LLEAQRL  R TYD+EMLE  G+C 
Sbjct: 253 PASHYVAGPERMRKAIAGIQAELEERLAELEAAGKLLEAQRLRMRTTYDVEMLEQMGTCA 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR PG PP TL +Y PED L+ +DESHVT+PQI GMY GD  RK TL E+
Sbjct: 313 GVENYSRHFDGRAPGSPPNTLLDYFPEDFLVVIDESHVTVPQIGGMYEGDAARKRTLVEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL ++E+      T+ +SATPG +ELE+  G +VEQ+IRPTGLVDP V 
Sbjct: 373 GFRLPSAMDNRPLTWDEFRERTGQTLYLSATPGPYELERVGGDVVEQVIRPTGLVDPEVI 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+  EI + A++  R+L+T LTK+MAEDLT+YL +  IRVRY+HSE+ TL 
Sbjct: 433 VKPTEGQIDDLVHEIRIRAERDERVLVTTLTKKMAEDLTDYLTDLGIRVRYLHSEIDTLR 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 493 RVELLRELRVGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V+ +V +YADT+T ++  AI+ET RRR KQL +N +H I+P+ +++KI +++D +  ED
Sbjct: 553 HVSGQVHMYADTVTDAMAAAIEETNRRRAKQLAYNAEHGIDPKPLRKKIADILDSLARED 612

Query: 741 AATTNI-----------------------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
           A T  +                        +  Q  +L +++  A ++ L +QMH AA +
Sbjct: 613 ADTAELLARSRGEKRGTPTPRSGALSGPDRVAEQAKNLPREELAALVEQLTEQMHQAAAD 672

Query: 778 LNFEEAARIRDEIKRLK 794
           L FE AAR+RDEIK LK
Sbjct: 673 LQFELAARLRDEIKELK 689


>gi|225027283|ref|ZP_03716475.1| hypothetical protein EUBHAL_01539 [Eubacterium hallii DSM 3353]
 gi|224955385|gb|EEG36594.1| hypothetical protein EUBHAL_01539 [Eubacterium hallii DSM 3353]
          Length = 664

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/655 (53%), Positives = 474/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+GDQP AI +L+KG     + + LLGVTGSGKTFTMA VI  + +P +++A
Sbjct: 4   FELVSDFAPTGDQPQAIEELVKGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID++RH
Sbjct: 64  HNKTLAAQLYSEFKAFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L+ER D IVVSSVSCIYGIGS   Y++M++ L+ G  +++ E++  L+  QY R 
Sbjct: 124 SATAALIERKDVIVVSSVSCIYGIGSKNDYAKMMISLRPGMEIDRDEVVRRLIDIQYVRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFP-SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           ++   RG+FRV GD +E+ P S  ED A  +  FG++I+ I +   LTG+   ++    I
Sbjct: 184 ELDFKRGSFRVRGDVLEVVPVSSFED-AIHIEFFGDEIDRIMQVDVLTGEIKASLNFAII 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SHYV P+  +  A+K IKEEL  R+   ++  +LLEAQR+ +R  +D+EML+ TG C
Sbjct: 243 FPASHYVVPQEQIERAVKTIKEELDERVEYFKENDQLLEAQRISERTNFDIEMLKETGFC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LTG  PG+ P TL ++  +D L+ VDESH+TIPQ+ GMY GD  RK TL +
Sbjct: 303 SGIENYSRHLTGLEPGKAPYTLIDFFGDDFLMIVDESHITIPQVRGMYAGDRSRKQTLVD 362

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL F+E+       + VSATP  +E E  + +  EQIIRPTGL+DPP+
Sbjct: 363 FGFRLPSALDNRPLNFDEFEERIDQMLFVSATPNVYEGEH-EMLRAEQIIRPTGLLDPPI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R    Q++D+  EIN    +  ++L+T LTKRMAEDLT Y+ E +IRV+Y+HS++ TL
Sbjct: 422 DVRPVEGQIDDLISEINKEVAKKNKVLVTTLTKRMAEDLTAYMKELDIRVKYLHSDIDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEI+RDLR+G FDVLVGINLLREGLDIPE  L+AILDADKEGFLRS+TSL+QTIGRAA
Sbjct: 482 ERIEIVRDLRMGVFDVLVGINLLREGLDIPEVTLIAILDADKEGFLRSETSLVQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN    VI+Y DTIT S++ AI ET RRRE Q+ +N++H I P+++++ I +VI     E
Sbjct: 542 RNAEGHVIMYGDTITDSMRAAITETKRRREIQMAYNEEHGITPKTIQKAIRDVISITNEE 601

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               +  S+     S+++K+    +  L K+M+ AA  LNFEEAA +RDE+K+ K
Sbjct: 602 APEKSRGSLKKDMESMNRKELTEMIAKLTKKMNKAAAELNFEEAAELRDELKKYK 656


>gi|294617428|ref|ZP_06697062.1| excinuclease ABC, B subunit [Enterococcus faecium E1679]
 gi|291596334|gb|EFF27593.1| excinuclease ABC, B subunit [Enterococcus faecium E1679]
          Length = 664

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/656 (53%), Positives = 471/656 (71%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL+ G+   +K Q+LLG TG+GKT+T++ +IE + +P +++A
Sbjct: 10  FELVSKYQPAGDQPEAINQLVDGVVGGKKAQILLGATGTGKTYTISNLIEKVNKPTLIIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IV++SVSCI+G+GS   Y + +V ++ G  +++ +L+  LV  Q++R 
Sbjct: 130 SATSSLLERNDVIVIASVSCIFGLGSPFEYQKQVVSIRQGAELDRNQLIRDLVSIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV G+ +EIFP+  ++ A RV  FG+++E I E   LTG+ +   E + I+
Sbjct: 190 DIDFQRGRFRVRGNVVEIFPASRDERALRVEFFGDEVERIREVNALTGEVLGETEHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK EL+ RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFVTNDEHMEHAVANIKAELEQRLTVLRNENKLLEAQRLEQRTNYDIEMMLEMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ PED L+  DESHVT+PQI GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRKEGEPPYTLLDFFPEDFLIVADESHVTMPQIRGMYNGDRARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       I VSATPG +E EQ   +I +QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRLEEFEKHVNQIIYVSATPGPYEHEQTDTVI-QQIIRPTGLLDPVIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 429 VRPIMGQIDDLVGEINERVEKDQRVFVTTLTKKMAEDLTDYFKELGIKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 489 RTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD +T S++LA+DET+RRR  Q ++N++H I P+++ ++I ++I  I  E 
Sbjct: 549 NEEGKVIMYADKVTDSMRLAMDETSRRRTIQQKYNEEHGIVPKTIIKEIRDLI-SITKES 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  ++      ++K++    L  L K+M  AA  L+FE AA +RD I  LK+S
Sbjct: 608 EDDTKEAVQVSYEEMTKEEKDTLLMKLEKEMKDAAKALDFETAANVRDMILELKAS 663


>gi|320161399|ref|YP_004174623.1| uvrABC system protein B [Anaerolinea thermophila UNI-1]
 gi|319995252|dbj|BAJ64023.1| uvrABC system protein B [Anaerolinea thermophila UNI-1]
          Length = 680

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/668 (53%), Positives = 473/668 (70%), Gaps = 24/668 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P GDQP AI +L++GI    + Q+LLG TG+GKTFTMA +I  +  PA+V+A
Sbjct: 3   FKLHAPFQPMGDQPEAIEKLVEGIRQGMRHQVLLGATGTGKTFTMANIIARLNMPALVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK FFP NAVEYFVSYYDYYQPEAYVP+ D YIEK++ INE+I+R+R 
Sbjct: 63  HNKTLAAQLYAEFKEFFPENAVEYFVSYYDYYQPEAYVPQRDLYIEKDADINEEIERLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L+ R D I+V+SVSCIYG+GS E Y +  V L++G    +  LL  LV+ QY+R 
Sbjct: 123 SATTALMTRRDVIIVASVSCIYGLGSPEEYGKKAVTLEVGHIYRRNALLRILVESQYQRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ +  G FRV G+++E+FP++ E  A+R+  FG+++E I EF PLTG+       I I+
Sbjct: 183 DVELRPGVFRVRGETLEVFPAYEERRAYRIQFFGDEVERILEFNPLTGEVYGQPAQISIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HYVT   +L  A++ I+EEL+ R+   + +G+LLEAQR+EQR  YDLEML   G C 
Sbjct: 243 PAKHYVTKEESLEKAIQDIEEELQERIAFFKSQGKLLEAQRIEQRTLYDLEMLREVGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG PP TL +Y+P + LLF+DESH++IPQI GMY GD  RK  L +Y
Sbjct: 303 GIENYSRHLDQRPPGSPPWTLIDYLPSEYLLFIDESHMSIPQIRGMYNGDRSRKQVLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       I  SATPG +E+ + +  +VEQIIRPTGLVDP VE
Sbjct: 363 GFRLPSALDNRPLKFDEFEQHMGYVIYTSATPGPYEMARAEQ-VVEQIIRPTGLVDPEVE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI +  + G R+L+T LTKRMAEDL+EYL E  I+V Y+HSEV+TLE
Sbjct: 422 VRPTTGQIDDLIHEIRMRIEVGERVLVTTLTKRMAEDLSEYLMELGIKVHYLHSEVETLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ I+RDLRLG FDV+VGINLLREGLD+PE  LVAILDADKEGFLRS T+LIQTIGRAAR
Sbjct: 482 RVGILRDLRLGVFDVVVGINLLREGLDLPEVSLVAILDADKEGFLRSATALIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ KVI+YAD IT ++++AIDET RRR KQ+ +N+K  I P S+++ + ++        
Sbjct: 542 NVHGKVIMYADYITDAMRMAIDETNRRRAKQMAYNEKMGIIPVSIQKAVHDI-------- 593

Query: 741 AATTNISIDAQQLS---LSKKKGKAH----------LKSLRKQMHLAADNLNFEEAARIR 787
             T  + +  Q ++    S + GK+H          ++ L KQM  AA NL FE AA +R
Sbjct: 594 --TQQMGVQPQMVAEKGGSYRTGKSHGLARHELQRMIQELEKQMKEAARNLEFERAAALR 651

Query: 788 DEIKRLKS 795
           DE+  LK+
Sbjct: 652 DEMFELKA 659


>gi|205375098|ref|ZP_03227889.1| excinuclease ABC subunit B [Bacillus coahuilensis m4-4]
          Length = 658

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/663 (53%), Positives = 477/663 (71%), Gaps = 12/663 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +Q+ Y P GDQPAAI ++++GI   ++ Q LLG TG+GKTFTM+ VI+ + +P +
Sbjct: 1   MNVFDLQSHYSPQGDQPAAIKEIVQGIQDGKRHQTLLGATGTGKTFTMSNVIKEVNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID+
Sbjct: 61  IIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT SL ERND I+++SVSCIYG+GS E Y +++V L++G  +E+ +LL  LV  QY
Sbjct: 121 LRHSATSSLFERNDVIIIASVSCIYGLGSPEEYKELVVSLRVGMEIERNQLLRRLVDVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD +EIFP+  ++   R+  FG++I+ I E   LTG+     + +
Sbjct: 181 ERNDIDFRRGTFRVRGDVVEIFPASRDEHCIRIEFFGDEIDRIREVDALTGEIFGERDHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+VT    +  A++ I++EL+ +L  ++++G+LLEAQRLEQR  YDLEM+   G
Sbjct: 241 AIFPASHFVTREEKMRVAIENIEKELEEQLEMMKEDGKLLEAQRLEQRTRYDLEMMREMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LT R PG  P TL +Y P+D LL +DESHVT+PQI GM+ GD  RK  L
Sbjct: 301 FCSGIENYSRHLTLRPPGSTPYTLIDYFPKDFLLIIDESHVTLPQIRGMFNGDQARKQVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS MDNRPL F E+       + VSATPG +E+E     +VEQIIRPTGL+DP
Sbjct: 361 VDHGFRLPSAMDNRPLTFNEFEEKSHQLVYVSATPGPYEMEHTPQ-MVEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R    Q++D+  EI+   ++  R+L+T LTK+M+EDLT+YL E  I+V+Y+HSE+K
Sbjct: 420 TIDVRPIEGQIDDLLGEIHERIERNERVLVTTLTKKMSEDLTDYLKEIGIKVQYLHSEIK 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEIIRDLRLGK+DVLVGINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N  VI+Y D +T S++ AI ET RRR  Q E+N+KH I PQ++++ + +VI    
Sbjct: 540 AARNSNGHVIMYGDRMTDSMEKAISETARRRTIQEEYNEKHGITPQTIQKAVRDVIRATQ 599

Query: 738 LEDA-----ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             D       T +++       +SK + +  ++ L  +M  AA  L+FE AA +RD I  
Sbjct: 600 ASDGHEAPDGTKSVT------KMSKPERENLIERLEVEMKDAARALDFERAAELRDTILE 653

Query: 793 LKS 795
           LK+
Sbjct: 654 LKA 656


>gi|302550666|ref|ZP_07303008.1| excinuclease ABC, B subunit [Streptomyces viridochromogenes DSM
           40736]
 gi|302468284|gb|EFL31377.1| excinuclease ABC, B subunit [Streptomyces viridochromogenes DSM
           40736]
          Length = 715

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/702 (51%), Positives = 485/702 (69%), Gaps = 40/702 (5%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++   + +   ++ + Y P+GDQPAAIA+L + I + EK  +LLG TG+GK+ T A +IE
Sbjct: 4   VSQIERTVAPIEVVSPYQPNGDQPAAIAELARRIQAGEKDVVLLGATGTGKSATTAWMIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 64  KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V LK+G+ +++ ELL 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGEEIDRDELLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +P+TG+ 
Sbjct: 184 RFVDIQYTRNDMAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPITGEI 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I + E + ++  SHYV     +  A+  I++EL  RL ELEK+G+LLEAQRL  R TYD+
Sbjct: 243 ISDDEQLYVFPASHYVAGPERMERAVNDIEKELGERLSELEKQGKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML   G+C  +ENYS +  GR PG PP TL +Y P+D LL +DESHVT+PQI  MY GD
Sbjct: 303 EMLRQIGTCSGVENYSMHFDGRLPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG++E+ +  G +VEQIIR
Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFQGRIGQTVYLSATPGNYEMSRSDG-VVEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+VR
Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRQRTEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS
Sbjct: 482 YLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT +++ AI+ET RRREKQ+ +N +  I+PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMEKAIEETNRRREKQIAYNTEQGIDPQPLRKKIN 601

Query: 731 EVIDPILLEDAATTNI-------------SIDAQQLSLSKK--------KGKA------- 762
           +++  I  ED  T  +                A   SL  K        KGK        
Sbjct: 602 DIVAQIAREDVDTEQLLGTGYRKGRKDGGGTKAPVPSLGGKAAEAGKSAKGKGRSKETVP 661

Query: 763 ----------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      ++ L  +M  AA  L FE AAR+RDE+  +K
Sbjct: 662 TDRPAAELAEQIEELTTRMRAAAAELQFEIAARLRDEVSEMK 703


>gi|303238155|ref|ZP_07324691.1| excinuclease ABC, B subunit [Acetivibrio cellulolyticus CD2]
 gi|302594201|gb|EFL63913.1| excinuclease ABC, B subunit [Acetivibrio cellulolyticus CD2]
          Length = 660

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/655 (54%), Positives = 483/655 (73%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI +L +GI+   K Q LLGVTGSGKTFTMA VIE +Q+P +++A
Sbjct: 4   FKIASEYKPCGDQPKAIDKLCEGINRGLKGQTLLGVTGSGKTFTMANVIERVQKPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAY+  TDTYIEK++SINE+ID++RH
Sbjct: 64  HNKTLAAQLCSEFKEFFPDNIVEYFVSYYDYYQPEAYIATTDTYIEKDASINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G  E Y+ +++ L+ G   ++ E++  LV+ QY+R 
Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPEDYTDLMLSLRKGMQKDRDEIIRKLVEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I   RG FR  GD +EIFPS+  D   RV  FG++I+ I+E   LTG+ + ++    I+
Sbjct: 184 EIDFKRGKFRARGDVLEIFPSYSSDKVIRVEFFGDEIDRITEINYLTGEILGSMSHAAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T R  +  AM  I++EL+ RL EL+++G+LLEAQRLEQR  YDLEML+  G CQ
Sbjct: 244 PASHYATTRSKMEKAMVNIEKELEERLKELKEDGKLLEAQRLEQRTRYDLEMLQEVGFCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++GR PG  P TL +Y P+D L+ +DESHVT+PQ+  MY GD  RK +L +Y
Sbjct: 304 GIENYSRHISGREPGSSPYTLIDYFPDDFLMMIDESHVTVPQVGAMYNGDRSRKQSLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+       + VSATP ++E    Q  IVEQIIRPTGL+DP + 
Sbjct: 364 GFRLPSAFDNRPLKFNEFEERINQIVFVSATPAAYERNNSQQ-IVEQIIRPTGLIDPEII 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EIN   Q+  R+L+T LTK+M+EDLT+YL E + +V+Y+HS++ T+E
Sbjct: 423 VKPVKGQIDDLIGEINERIQKNERVLVTTLTKKMSEDLTDYLKELDFKVKYLHSDILTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  KVI+YADT+T+S++ AI ET RRR+ Q+E+N++H I PQS+K+ + +VI+     +
Sbjct: 543 NVEGKVIMYADTVTESMRKAISETNRRRKLQVEYNEEHGIIPQSIKKSVRDVIEATKAAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             ++  S+  ++  +S+ + +A +  L K+M  AA +L FE AA +RD++  LKS
Sbjct: 603 -ESSEYSVRREEEVISQGEAQAIIDRLTKEMKKAAADLQFERAAELRDKLNGLKS 656


>gi|269119848|ref|YP_003308025.1| excinuclease ABC subunit B [Sebaldella termitidis ATCC 33386]
 gi|268613726|gb|ACZ08094.1| excinuclease ABC, B subunit [Sebaldella termitidis ATCC 33386]
          Length = 657

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/650 (52%), Positives = 477/650 (73%), Gaps = 5/650 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+GDQP AI ++++ + +    Q+LLGVTGSGKTFT+A VIE + RPA++MA
Sbjct: 3   FKIHSDFKPTGDQPEAIEKIVENLENGVSDQILLGVTGSGKTFTVANVIERLNRPALIMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E+K FFP NAVEYFVSYYDYYQPEAYV  TDTYIEK+SSIN++ID++RH
Sbjct: 63  PNKTLAAQLYNEYKQFFPDNAVEYFVSYYDYYQPEAYVAVTDTYIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R D I+V+SVS IYG+GS E+Y +  + + +    ++ +L+  LV  +Y+R 
Sbjct: 123 AATAALLNRRDVIIVASVSAIYGLGSPEAYKKRSIPIDVSVGFDRNDLILRLVDLRYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD ++++P++ +D  +R   FG+D+E+ISE   LTGQKIR ++ I I 
Sbjct: 183 DYAFERGKFRVNGDVVDLYPTY-QDTGYRFEFFGDDLEDISEINTLTGQKIRKIQRISIM 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY++   +  T  + IK EL  R+    K+  LLEAQR++QR  YDLEM+   G C+
Sbjct: 242 PATHYLSTEDS-ETMFREIKSELDERIEFFNKKNMLLEAQRIKQRTEYDLEMIAEIGFCK 300

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTG+ PGE P TL +Y P+D ++F+DESH+++PQI+GMY+GD  RK +L + 
Sbjct: 301 GIENYSRYLTGKGPGETPDTLIDYFPKDLVVFLDESHISVPQINGMYKGDRARKQSLIDN 360

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRP+RFEE+    P  + +SATPG +E+EQ +  ++EQ++RPTG+V+P +E
Sbjct: 361 GFRLPSAFDNRPMRFEEFFEKTPQVVYISATPGDYEMEQSKSEVIEQLVRPTGIVEPTIE 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+ DEI L  ++G R+L+T LTK+MAE+LT+Y  E  ++V+YMHS+++TLE
Sbjct: 421 VRPTKNQIDDLMDEIKLRVEKGERVLVTTLTKKMAEELTDYYLEYGLKVKYMHSDIETLE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIR LR G+FDVLVGINLLREGLDIPE  LVAIL+ADKEG+LRS+ SLIQT+GRAAR
Sbjct: 481 RIEIIRGLRRGEFDVLVGINLLREGLDIPEVALVAILEADKEGYLRSRRSLIQTMGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  KVILYAD IT S++ A+DE  RRRE Q+E+NK+HNINP+++  KI + I    + +
Sbjct: 541 NVEGKVILYADRITGSMKEAMDEVERRREIQIEYNKEHNINPKTIVSKISDSIVDYEIGN 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
               +      +     +K    ++ L K++   A+ LNFE+A   RDE+
Sbjct: 601 EEKVDRIKKIYKDKKDIEK---EIRILEKEIRKLAEELNFEKAIAKRDEM 647


>gi|297195034|ref|ZP_06912432.1| excinuclease ABC subunit B [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297152598|gb|EFH31870.1| excinuclease ABC subunit B [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 704

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/691 (51%), Positives = 485/691 (70%), Gaps = 29/691 (4%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++   + +  F++ + + PSGDQP AIA+L + I + EK  +LLG TG+GK+ T A +IE
Sbjct: 4   VSKIERTVAPFEVVSHFQPSGDQPTAIAELERRIRAGEKDVVLLGATGTGKSATTAWMIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 64  KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +VQLK+GD +++ +LL 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVQLKVGDEIDRDQLLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ 
Sbjct: 184 RFVDIQYTRNDLAFQRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEI 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +   +++ ++  SHYV     +  A+  I+ EL+ RL EL+K+G+LLE+QRL  R TYD+
Sbjct: 243 LSEDQSLYVFPASHYVAGPERMEKAVNGIEAELEQRLAELDKQGKLLESQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   GSC  IENYS +   R PG PP TL +Y PED LL +DESHVT+PQI  MY GD
Sbjct: 303 EMMRQIGSCSGIENYSMHFDDREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG++EL +  G  VEQIIR
Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFKERIGQTVYLSATPGTYELSRGDG-FVEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+VR
Sbjct: 422 PTGLIDPQVVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS
Sbjct: 482 YLHSDVDTLRRVELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT +++ AI+ET RRREKQ+ +N ++ I+PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMEKAIEETNRRREKQIAYNTENGIDPQPLRKKIN 601

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAH--------------------------- 763
           +++  I  E+  T  +     + + ++K GK                             
Sbjct: 602 DIVATIAREEIDTEELLGTGYRQAKAEKPGKGAKAPVPSLGAGRKGEILSDRPAAELAGI 661

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           ++ +  +M  AA  L FE AAR+RDE+  LK
Sbjct: 662 IEEMTDRMRAAAAELQFEVAARLRDEVGELK 692


>gi|25028055|ref|NP_738109.1| excinuclease ABC subunit B [Corynebacterium efficiens YS-314]
 gi|259505606|ref|ZP_05748508.1| excinuclease ABC, B subunit [Corynebacterium efficiens YS-314]
 gi|23493339|dbj|BAC18309.1| putative xcinuclease ABC subunit B [Corynebacterium efficiens
           YS-314]
 gi|259166799|gb|EEW51353.1| excinuclease ABC, B subunit [Corynebacterium efficiens YS-314]
          Length = 701

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/672 (53%), Positives = 475/672 (70%), Gaps = 28/672 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQPAAIA+L K + + E+  +LLG TG+GK+ T A +IE  QRP +VMA
Sbjct: 28  FEVISEFQPAGDQPAAIAELDKRLTNGERDVVLLGATGTGKSATAAWLIEKQQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH
Sbjct: 88  PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ +SY    + LK+GD V++   L  LV  QY R 
Sbjct: 148 SATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSIVLKVGDEVDRDRFLRLLVDIQYDRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD+++I P++ E++A RV  FG++I+ +   +PLTG  +RNV+ + I+
Sbjct: 208 DIAFTRGAFRVKGDTVDIIPAY-EELAVRVEFFGDEIDSLYYIHPLTGDVVRNVKEVHIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  IK EL+ RL +LE  G+LLEAQRL  R  YDLEM+E  G C 
Sbjct: 267 PATHYVAGPERMEKAVADIKAELEDRLADLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG  P TL +Y PED L  +DESHVT+PQI GM+ GD  RK  L E+
Sbjct: 327 GIENYSRHIDGRGPGTAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE++  R  T+ +SATPG +E+    G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSALDNRPLTWEEFDARRGQTVFMSATPGKFEIAAAGGEFVEQVIRPTGLVDPKVT 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ TL+
Sbjct: 447 VKPTKGQIDDLIHEIRGRTEKDERVLVTTLTKKMAEDLTDYLLENGIRVRYLHSDIDTLQ 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           NV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +NK++ I+PQ +++KI +++D      
Sbjct: 567 NVSGEVIMYADKITDSMQYAIEETDRRREKQIAYNKEYGIDPQPLRKKIADILDQVYENQ 626

Query: 735 ------PILLEDAA------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                 P L  DAA      T+ + +D  Q           +  L  QM  AA  L FE 
Sbjct: 627 ESGVGAPGLTGDAAVVEKPDTSGMQVDQLQ---------KLIDDLSAQMAAAARELKFEL 677

Query: 783 AARIRDEIKRLK 794
           A R+RDE+  LK
Sbjct: 678 AGRLRDEVFELK 689


>gi|51891289|ref|YP_073980.1| excinuclease ABC subunit B [Symbiobacterium thermophilum IAM 14863]
 gi|81826261|sp|Q67T57|UVRB_SYMTH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|51854978|dbj|BAD39136.1| excinuclease ABC subunit B [Symbiobacterium thermophilum IAM 14863]
          Length = 659

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/656 (56%), Positives = 476/656 (72%), Gaps = 8/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AI +L +G+    + Q+LLG TG+GKTFT+AKVIE +Q+P +V+A
Sbjct: 4   FKVVAPFEPTGDQPQAIERLSEGVRRGAREQILLGATGTGKTFTIAKVIEQVQKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NKILAAQL SEF+ FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK++ IN++ID++RH
Sbjct: 64  HNKILAAQLCSEFQQFFPENAVEYFVSYYDYYQPEAYIPTTDTYIEKDALINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y  + V L++G+ V++  +L  LV  QY+R 
Sbjct: 124 SATMALFERRDVIIVASVSCIYGLGSPEDYRDLAVSLRVGNQVDRDYILRRLVDIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D   +R  FRV GD +EIFP+   D A R   +G++IE ISEF PLTG+    +  + IY
Sbjct: 184 DHNFVRNKFRVRGDVVEIFPAGATDRAIRCEWWGDEIERISEFDPLTGEITGTMTHVAIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV        A++ I+EEL+ RL EL  +G+LLEAQRLEQR   DLEM+   G C 
Sbjct: 244 PASHYVVADEKREQALRSIEEELEERLKELRAQGKLLEAQRLEQRTRNDLEMIREIGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGEPP TL ++ P+D LL +DESHVTIPQ++ MY GD  RK TL EY
Sbjct: 304 GIENYSRHLTGRKPGEPPYTLLDFFPDDWLLVIDESHVTIPQVAAMYNGDRSRKETLIEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559
           GFRLPS  DNRPL+F E+       I VSATPG +ELE+    ++VEQI+RPTGL+DP V
Sbjct: 364 GFRLPSAADNRPLKFAEFEERINQVIYVSATPGPYELERVPPSLVVEQIVRPTGLLDPEV 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + Q++D+Y EI    ++  R+L+T LTKRMAEDLTEYL E  ++VRYMHS+V+T+
Sbjct: 424 EVRPTKGQIDDLYAEIRARVKKNQRVLVTTLTKRMAEDLTEYLKELGVKVRYMHSDVETI 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAA
Sbjct: 484 ERMQIVRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-L 738
           RN   KVI+YAD IT+S+Q AI+ET RRR  Q  +N+KH I P+++ + + +VI  +  +
Sbjct: 544 RNAEGKVIMYADRITQSMQKAINETNRRRAIQEAYNRKHGIVPKTIVKPVRDVIQAVKPV 603

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +A   NI +D     + K   K     LRK+M  AA +L+FE AA IRD I  L+
Sbjct: 604 AEAGPANI-LDTPPHEIPKVVAK-----LRKEMMQAAKDLDFERAAEIRDIIFELE 653


>gi|311070019|ref|YP_003974942.1| excinuclease ABC subunit B [Bacillus atrophaeus 1942]
 gi|310870536|gb|ADP34011.1| excinuclease ABC subunit B [Bacillus atrophaeus 1942]
          Length = 661

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/656 (53%), Positives = 474/656 (72%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L+KGI   +K Q LLG TG+GKTFT++ +I+ + +P +V+A
Sbjct: 5   FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y +M++ L+    +E+ +LL  LV  QY R 
Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYREMVLSLRTEMEIERNQLLRKLVDIQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ + + + + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I++EL+ +L  + ++G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTRAEKMEKAILNIEKELEEQLKVMHEKGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D ++ VDESHVTIPQ+ GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       + VSATPG +E+E    +I EQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTPEMI-EQIIRPTGLLDPIIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIQARTERNERVLITTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILLE 739
           N   +VI+YAD +TKS+++AI+ET RRRE+Q   N++H I PQ++ ++I +VI   +  E
Sbjct: 544 NAEGRVIMYADKMTKSMEIAINETKRRREQQERFNEEHGITPQTINKEIRDVIRATVAAE 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           D          +   ++KK+ +  ++ +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 DKEEYKTKAAPKLAKMTKKERQKVVEQMELEMKEAAKALDFERAAELRDLLLELKA 659


>gi|227510643|ref|ZP_03940692.1| excision endonuclease subunit UvrB [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227524803|ref|ZP_03954852.1| excision endonuclease subunit UvrB [Lactobacillus hilgardii ATCC
           8290]
 gi|227088018|gb|EEI23330.1| excision endonuclease subunit UvrB [Lactobacillus hilgardii ATCC
           8290]
 gi|227190295|gb|EEI70362.1| excision endonuclease subunit UvrB [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 667

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/668 (52%), Positives = 474/668 (70%), Gaps = 13/668 (1%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
           NNH      F + + Y P+GDQP AI +L+ G+   +K Q+LLG TG+GKTFT++ VI  
Sbjct: 6   NNHK-----FDLVSSYQPTGDQPQAIKKLVNGVDDGKKAQILLGATGTGKTFTISNVIAQ 60

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           + +P +V++ NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK+SSI
Sbjct: 61  VNKPTLVLSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI 120

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           N++ID++RHSAT SLLERND IVV+SVS I+G+G    Y   +V L++G ++E+  LL  
Sbjct: 121 NDEIDQLRHSATSSLLERNDVIVVASVSSIFGLGDPTEYRNHVVSLRVGQNIERDHLLRQ 180

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV  QY R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ I
Sbjct: 181 LVDIQYDRNDIDFQRGRFRVHGDVVEVFPASWDEHAFRIEFFGDEIDRIREVDTLTGEVI 240

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
            + E I I+  +H++T    +  A+  I++E+  ++ + EKEG+LLEAQRL+QR TYD+E
Sbjct: 241 GDREHIAIFPATHFLTNDDVMKLALPEIQQEMDSQVSKFEKEGKLLEAQRLKQRTTYDIE 300

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M+   G    IENYSR++  R PG+PP TL ++ P+D LL VDESH T+PQI GMY GD 
Sbjct: 301 MMREMGYTSGIENYSRFMDRRKPGQPPFTLLDFFPDDYLLVVDESHQTMPQIRGMYNGDK 360

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK  L +YGFRLPS +DNRPLR  E+       I +SATPG +E++Q +  +V+QIIRP
Sbjct: 361 ARKEQLVKYGFRLPSALDNRPLRLPEFEKRVHQVIYMSATPGPYEMDQTKD-VVQQIIRP 419

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP +++R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+V+Y
Sbjct: 420 TGLLDPTIDVRPIMGQMDDLVGEINKRVDKHERVFVTTLTKKMAEDLTDYLKDLGIKVKY 479

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS++KTLER +IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLR++ SL
Sbjct: 480 LHSDIKTLERTQIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSL 539

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRA+RN +  VI+YAD++T S++ AIDET RRR  Q+++NK+H I P+++   I  
Sbjct: 540 IQTIGRASRNEHGAVIMYADSVTDSMKAAIDETARRRAIQIKYNKEHGITPKTI---IKP 596

Query: 732 VIDPILL----EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           V D I +     DA   +  +++    +S K  K  L  L  +M  AA  L+FE+AA +R
Sbjct: 597 VRDAISITKSSSDAGKKDDFVESDFEQMSTKDQKNMLARLTDEMREAAKKLDFEQAATLR 656

Query: 788 DEIKRLKS 795
           D I  LK+
Sbjct: 657 DTIMELKA 664


>gi|164686652|ref|ZP_02210680.1| hypothetical protein CLOBAR_00247 [Clostridium bartlettii DSM
           16795]
 gi|164604042|gb|EDQ97507.1| hypothetical protein CLOBAR_00247 [Clostridium bartlettii DSM
           16795]
          Length = 670

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/659 (53%), Positives = 479/659 (72%), Gaps = 7/659 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D+  F++++D+ P+GDQP AI +++  I+  EK   LLGVTGSGKTFTMA +I+ +++P 
Sbjct: 13  DVMDFKIKSDFKPTGDQPEAIREIVNAINHDEKFSTLLGVTGSGKTFTMANIIQEVKKPT 72

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++A NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV  +DTYIEK++SIN++ID
Sbjct: 73  LILAHNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEID 132

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++RHSAT S+LER D I+VSSVSCIYGIG  + Y  +++ L+ G  V++ +++  L++ Q
Sbjct: 133 KLRHSATASILEREDTIIVSSVSCIYGIGDPKDYKDLMLSLREGMQVDRDDVIKKLIEIQ 192

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R DI  +RGTFRV GD +EIFP   ++ A RV  FG++I+ I+E   +TG+ +   + 
Sbjct: 193 YERNDINFVRGTFRVRGDVVEIFPVSNDERAIRVEFFGDEIDRITEIDYVTGKIVGTRKY 252

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             I+  SHYVT    +  A+  I++EL   + E +   +LLEAQR+EQR  YD+EML   
Sbjct: 253 TAIFPASHYVTTPERIEQAIDAIEKELAQVIQEFKDNDQLLEAQRIEQRTKYDIEMLREV 312

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G CQ IENYSR++TGR PGE P TL  + P+D LL +DESHVTIPQ+ GMY GD  RK +
Sbjct: 313 GFCQGIENYSRHITGRKPGEKPYTLMNFFPDDFLLIIDESHVTIPQVRGMYAGDRSRKKS 372

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L + GFRLPS  DNRPL FEE+       + VSATPG +E+E     + +QIIRPTGL+D
Sbjct: 373 LIDNGFRLPSAYDNRPLNFEEFEENINQVLFVSATPGPYEIEHST-TVAQQIIRPTGLLD 431

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R    Q++D+  EIN   ++  R+L+T LTK+M+EDLT YL E  I+V+Y+HS++
Sbjct: 432 PIIEVRPIVNQIDDLVGEINKVVERNERVLVTTLTKKMSEDLTNYLKEVGIKVKYLHSDI 491

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER EIIRDLRLGKFDVLVGINLLREGLDIPE  L+AILDADKEGFLRS+TSLIQT+G
Sbjct: 492 VTLERTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETSLIQTVG 551

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN   +VI+YAD IT+S+   I+ET RRR+ Q ++N++H I P+++K+ I + I+ +
Sbjct: 552 RAARNAEGRVIMYADKITRSMAATIEETARRRQIQSQYNEEHGIIPRTIKKDIRDNIETL 611

Query: 737 -LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            L E+     IS      + +K + K +++ L+ +M  AA NL FE AA++RD+IK L+
Sbjct: 612 KLAEEEEIYGIS-----ETDNKDEIKENIEKLQAEMMEAATNLQFERAAQLRDKIKELE 665


>gi|150391818|ref|YP_001321867.1| excinuclease ABC subunit B [Alkaliphilus metalliredigens QYMF]
 gi|149951680|gb|ABR50208.1| excinuclease ABC, B subunit [Alkaliphilus metalliredigens QYMF]
          Length = 664

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/659 (54%), Positives = 481/659 (72%), Gaps = 3/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+DY P+GDQP AI  L +GI    + Q+LLGVTGSGKTFTMA +I+ +Q+P +++A
Sbjct: 4   FEIQSDYQPTGDQPKAIEALSQGIKEGLRDQVLLGVTGSGKTFTMANIIQDVQKPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP+NAVEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYVVQSDTYIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D I+V+SVSCIYG+G    Y +++V L+ G + ++ ++L  LV  QY R 
Sbjct: 124 SATSALLERRDVIIVASVSCIYGLGDPAEYKKLVVSLRTGMTKDRDQVLRQLVDIQYLRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  IRGTFRV GD +EIFP+   + A RV  FG++I+ I+E   LTG+ +     I I+
Sbjct: 184 DINFIRGTFRVRGDIVEIFPASSSENAIRVEFFGDEIDRITEINSLTGEIVGLRNHISIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T    +  A++ I++EL  ++   ++E +L+EAQR++QR  YD+EML   G CQ
Sbjct: 244 PASHYATSADKIENAIESIEQELIEQVAFFKQEEKLIEAQRIQQRTMYDIEMLREVGFCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR LTGR  G  P TL +Y P+D L+ VDESH TIPQ+ GMY GD  RK +L  +
Sbjct: 304 GIENYSRQLTGRKAGSRPFTLIDYFPDDYLIIVDESHATIPQVGGMYAGDRSRKESLINH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+  L    + VSATPG +ELE+ Q  I EQIIRPTGL+DP VE
Sbjct: 364 GFRLPSALDNRPLNFKEFEKLVNQILYVSATPGPYELERNQR-IEEQIIRPTGLLDPVVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++++  EI+   ++  R+L+T LTK+M+EDLT YL E +I+VRY+HS++ T+E
Sbjct: 423 VRPIEGQIDNLVGEIHKRIEKKQRVLVTTLTKKMSEDLTNYLKEIDIKVRYLHSDILTME 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T+LIQT GRAAR
Sbjct: 483 RMEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSATALIQTTGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +VI+YA+ ITKS+Q AIDET RRR  Q+E+N KH I P+++ +K+  VI+   + +
Sbjct: 543 NVEGRVIMYANRITKSMQKAIDETERRRLIQIEYNDKHQITPKTIVKKVRNVIEATKVAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
                  ++ +  +L+ ++ +  ++ L+ +M  AAD L FE AA +RD++K+LK   YF
Sbjct: 603 EK-EKYGLNKEIEALTPEEVEELIQRLQIEMMQAADELQFERAAELRDQVKKLKKV-YF 659


>gi|227513658|ref|ZP_03943707.1| excision endonuclease subunit UvrB [Lactobacillus buchneri ATCC
           11577]
 gi|227083174|gb|EEI18486.1| excision endonuclease subunit UvrB [Lactobacillus buchneri ATCC
           11577]
          Length = 667

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/668 (52%), Positives = 474/668 (70%), Gaps = 13/668 (1%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
           NNH      F + + Y P+GDQP AI +L+ G+   +K Q+LLG TG+GKTFT++ VI  
Sbjct: 6   NNHK-----FDLVSSYQPTGDQPQAIKKLVNGVDDGKKAQILLGATGTGKTFTISNVIAQ 60

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           + +P +V++ NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK+SSI
Sbjct: 61  VNKPTLVLSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI 120

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           N++ID++RHSAT SLLERND IVV+SVS I+G+G    Y   +V L++G ++E+  LL  
Sbjct: 121 NDEIDQLRHSATSSLLERNDVIVVASVSSIFGLGDPTEYRNHVVSLRVGQNIERDHLLRQ 180

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV  QY R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ I
Sbjct: 181 LVDIQYDRNDIDFQRGRFRVHGDVVEVFPASWDEHAFRIEFFGDEIDRIREVDTLTGEVI 240

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
            + E I I+  +H++T    +  A+  I++E+  ++ + EKEG+LLEAQRL+QR TYD+E
Sbjct: 241 GDREHIAIFPATHFLTNDDVMKLALPEIQQEMDSQVSKFEKEGKLLEAQRLKQRTTYDIE 300

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M+   G    IENYSR++  R PG+PP TL ++ P+D LL VDESH T+PQI GMY GD 
Sbjct: 301 MMREMGYTSGIENYSRFMDRRKPGQPPFTLLDFFPDDYLLVVDESHQTMPQIRGMYNGDK 360

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK  L +YGFRLPS +DNRPLR  E+       I +SATPG +E++Q +  +V+QIIRP
Sbjct: 361 DRKEQLVKYGFRLPSALDNRPLRLPEFEKRVHQVIYMSATPGPYEMDQTKD-VVQQIIRP 419

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP +++R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+V+Y
Sbjct: 420 TGLLDPTIDVRPIMGQMDDLVGEINKRVDKHERVFVTTLTKKMAEDLTDYLKDLGIKVKY 479

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS++KTLER +IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLR++ SL
Sbjct: 480 LHSDIKTLERAQIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSL 539

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRA+RN +  VI+YAD++T S++ AIDET RRR  Q+++NK+H I P+++   I  
Sbjct: 540 IQTIGRASRNEHGAVIMYADSVTDSMKAAIDETARRRAIQIKYNKEHGITPKTI---IKP 596

Query: 732 VIDPILL----EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           V D I +     DA   +  +++    +S K  K  L  L  +M  AA  L+FE+AA +R
Sbjct: 597 VRDAISITKSSSDAGKKDDFVESDFEQMSTKDQKNMLARLTDEMREAAKKLDFEQAATLR 656

Query: 788 DEIKRLKS 795
           D I  LK+
Sbjct: 657 DTIMELKA 664


>gi|194468167|ref|ZP_03074153.1| excinuclease ABC, B subunit [Lactobacillus reuteri 100-23]
 gi|194453020|gb|EDX41918.1| excinuclease ABC, B subunit [Lactobacillus reuteri 100-23]
          Length = 671

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/662 (52%), Positives = 470/662 (70%), Gaps = 11/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL KGI   EK Q+LLG TG+GKTFT++ VI  + +P ++++
Sbjct: 10  FELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y   ++ L++G  +E+  LL+ LV  Q+ R 
Sbjct: 130 SATTSLLERNDVIVVASVSSIFGLGDPREYQNSVLSLRVGQEIERDRLLTELVNIQFDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E   LTG+ I + + + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDEIDRIREVDALTGEVIGDRDHVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +   EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNEEVMDRALPQIEADMKKQVKKFTDEGKLLEAERIQQRTTYDIEMMREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+ GR PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRYMDGRKPGEPPYTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + +SATPG +E+EQ    + +QIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLKLPEFEQHVNQVVYMSATPGPYEMEQTDH-VTQQIIRPTGLLDPTVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+M+EDLT+YL +  ++V+Y+HS++KTLE
Sbjct: 429 VRPVMGQIDDLVGEINKRIEKNERVFVTTLTKKMSEDLTDYLKDMGLKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733
           N N  VI+YADT+T S+Q A+DET RRR  Q+++N++H+I P ++ + I E I       
Sbjct: 549 NENGAVIMYADTVTDSMQKAMDETKRRRTIQMKYNEEHHITPHTIIKPIQEAITVTKKAT 608

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           D I  +++A      D     L K+     L  L +QM  AA  L+FE+AA +RD I  L
Sbjct: 609 DEIEADNSAEFT---DKDFAKLDKEAQAKMLDELTEQMRSAAKRLDFEQAATLRDTIMEL 665

Query: 794 KS 795
           K+
Sbjct: 666 KT 667


>gi|300858355|ref|YP_003783338.1| UvrABC system protein B [Corynebacterium pseudotuberculosis FRC41]
 gi|300685809|gb|ADK28731.1| UvrABC system protein B [Corynebacterium pseudotuberculosis FRC41]
 gi|302330624|gb|ADL20818.1| excinuclease ABC subunit B [Corynebacterium pseudotuberculosis
           1002]
          Length = 699

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/662 (54%), Positives = 472/662 (71%), Gaps = 9/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQPAAI +L   +   E+  +LLG TG+GK+ T A +IE  QRP +VMA
Sbjct: 28  FHVVSEYKPAGDQPAAIEELDARLDRGERDVVLLGATGTGKSATAAWLIEQQQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 88  PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT SLL R D +VVSSVSCIYG+G+ +SY    V LK+G+ VE+   L  LV  QY R 
Sbjct: 148 RATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVMLKVGEEVERDRFLRLLVDIQYDRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DIG  RGTFRV GD+++I P++ E+VA RV  FG++I+ +   +PLTG  IR VE ++I+
Sbjct: 208 DIGFTRGTFRVKGDTVDIIPAY-EEVAVRVEFFGDEIDALYYIHPLTGDVIRRVEEVRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A++ IKEEL  RL +LE  G+LLEAQRL  R  YDLEM+E  G C 
Sbjct: 267 PATHYVAGLERMAKAIEGIKEELADRLTDLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  G  P TL +Y P D L  +DESHVT+PQI GM+ GD  RK  L E+
Sbjct: 327 GIENYSRHLDGREAGSAPATLLDYFPADFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR+EE+      T+ +SATPG +EL    G  VEQ+IRPTGL+DP ++
Sbjct: 387 GFRLPSALDNRPLRWEEFEQRVGQTVYMSATPGDYELAAAGGEYVEQVIRPTGLLDPKID 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    Q+  R+L+T LTK+MAEDLT+YL E N+RVRY+HS++ TL+
Sbjct: 447 VRPTKGQIDDLIHEIRQRTQKQERVLVTTLTKKMAEDLTDYLLENNVRVRYLHSDIDTLQ 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTKSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738
           NV+ +VI+YAD +T S+Q AIDET RRREKQ+ +N +H I+PQ +++KI +++D +    
Sbjct: 567 NVSGEVIMYADRVTDSMQYAIDETERRREKQIAYNTEHGIDPQPLRKKIADILDQVQEAR 626

Query: 739 EDAATTNISIDA-----QQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            + A+   S DA     + LS +   K +  +  L  QM  AA  L FE A R+RDEI  
Sbjct: 627 GETASQEASADAAIAEKRDLSAMPADKLEVLISELTAQMGEAARELKFELAGRLRDEIVD 686

Query: 793 LK 794
           LK
Sbjct: 687 LK 688


>gi|283782003|ref|YP_003372758.1| excinuclease ABC, B subunit [Pirellula staleyi DSM 6068]
 gi|283440456|gb|ADB18898.1| excinuclease ABC, B subunit [Pirellula staleyi DSM 6068]
          Length = 691

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/658 (52%), Positives = 479/658 (72%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++ + P+GDQP AI +L++GI + ++ Q+LLGVTGSGKTFTMA VI+ +Q+P +V++
Sbjct: 3   FQLESQFQPAGDQPQAIEKLVQGIRANKRSQVLLGVTGSGKTFTMANVIQQVQKPTLVIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAV YFVSYYDYYQPEAY+P+ D YIEK++SIN++IDR+R 
Sbjct: 63  HNKTLAAQLYSEFKEFFPRNAVHYFVSYYDYYQPEAYIPQRDIYIEKDASINQEIDRLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           ++T SL+ R D I+++SVSCIYG+GS + Y  M+V L++G ++++ E+LS LV  QY R 
Sbjct: 123 ASTSSLVSRQDVIIIASVSCIYGLGSPKDYKAMMVPLRVGQAIDRDEVLSRLVDIQYDRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EI+PS+ E+ A+R+ ++G+DIE++S   P++G+ +   + + IY
Sbjct: 183 DIAFERGKFRVRGDCVEIWPSY-EEYAFRIELWGDDIEKLSFINPISGETLATQDQLFIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V P   +  A++ IK+EL  RL EL + G+LLEAQRL  R  +D+EML+  G C 
Sbjct: 242 PAKHFVLPEERIAGAIETIKQELDERLNELREHGKLLEAQRLSARTRFDIEMLQEVGHCP 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR PG  P TL+++ PED LL +DESHVTIPQ+  MY GD  RK TL E+
Sbjct: 302 GIENYSRPLAGRPPGSTPDTLYDFFPEDYLLIIDESHVTIPQVRAMYNGDRARKITLVEH 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEEW       + VSATP  +EL Q QG +VEQIIRPTGL+DP +E
Sbjct: 362 GFRLPSALDNRPMKFEEWEQKIKQVVYVSATPNDYELLQSQGEVVEQIIRPTGLLDPVIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           + SAR QV+ + ++I   A  G R+L+T LTKR+AEDL+ YL ++ +  +++HSE+   E
Sbjct: 422 VVSARGQVQHLLEQIRERAAVGERVLVTALTKRLAEDLSAYLVQQKVACKWLHSELDAFE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++RDLR GKF+ L+G+NLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RVELLRDLRQGKFEALIGVNLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           NVN+KVILYAD IT+S++LA++ET+RRR  Q  +N +H I P++VK+ I   I+  +   
Sbjct: 542 NVNAKVILYADKITESMRLAMEETSRRRAIQEAYNLEHGITPETVKKHIRAGIESAMAAH 601

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            DA      +D +++   +         L  +M  AA+ L FE A  +RD I +L+ +
Sbjct: 602 RDANAAVGRVDEEEVITEELL-----SELEAEMLEAAEKLEFERAGALRDRITQLRDA 654


>gi|297626691|ref|YP_003688454.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922456|emb|CBL57029.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 694

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/682 (51%), Positives = 476/682 (69%), Gaps = 20/682 (2%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++  ++ +  F++  D+ PSGDQP AI +L + I + E+  +L+G TG+GKT T+A + E
Sbjct: 4   VDTITRTVAPFKVHADFEPSGDQPQAIEELARRIEAGEQDVVLMGATGTGKTATVAWLAE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VM PNK LAAQ  +E + FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SS
Sbjct: 64  RLQRPMLVMQPNKTLAAQYATELRGFFPDNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +NE+++R+R+SAT SLL R D IVV++VS IYG+G+ + Y   ++ LK+G   ++  LL 
Sbjct: 124 LNEEVERLRYSATNSLLTRRDVIVVATVSAIYGLGTPQEYVDQMINLKVGQEWDRSNLLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV+ QY R D+   RGTFRV GD++EIFP + E+ A RV  FG++IE ++   PLTG+ 
Sbjct: 184 RLVEVQYVRNDMAATRGTFRVRGDTLEIFPMY-EEFAIRVEFFGDEIEALTTLNPLTGEI 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +   + + ++  SHY      +  A+  I+ EL  RL ELEK+ +LLEAQRL  R  YD+
Sbjct: 243 VSEDKQVYVFPASHYTAGPERMARAITDIEAELADRLAELEKDNKLLEAQRLRMRTNYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   G+C  IENYSR++ GR  G PP  L +Y PED +L +DESHVT+PQI GMY GD
Sbjct: 303 EMMRQIGTCSGIENYSRHIDGRPAGSPPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS MDNRPLRFEE+      T+  SATPG +EL +  G+ VEQIIR
Sbjct: 363 MSRKRTLVDHGFRLPSAMDNRPLRFEEFTERIGQTVYSSATPGPYELARGNGV-VEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++    Q++D+  EI   A++  R+L+T LTK+MAEDLT+YL E  +R R
Sbjct: 422 PTGLVDPEVIVKPTHGQIDDLMGEIKARAKKDERVLVTTLTKKMAEDLTDYLMEHGVRTR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSEV TL+R+E++R+LR+G++DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  S
Sbjct: 482 YLHSEVDTLKRVELLRELRMGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSDRS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD +T S+  AIDET RRR+ Q+++NK H ++PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADQMTPSMTKAIDETNRRRQIQVDYNKAHGVDPQPLRKKIA 601

Query: 731 EVIDPILLEDAATTNISID-------AQQLSLSKKKGK-----------AHLKSLRKQMH 772
           ++ D ++ EDA T  +  D       A  L  +  K K             ++ L  QMH
Sbjct: 602 DITDMLVREDADTDKLLADTRGSGHEASALPTTSDKHKRGENLPATELAGLIQELTAQMH 661

Query: 773 LAADNLNFEEAARIRDEIKRLK 794
            AA  L FE AAR+RDEI  LK
Sbjct: 662 SAAGELQFELAARLRDEIADLK 683


>gi|254520577|ref|ZP_05132633.1| excinuclease ABC subunit B [Clostridium sp. 7_2_43FAA]
 gi|226914326|gb|EEH99527.1| excinuclease ABC subunit B [Clostridium sp. 7_2_43FAA]
          Length = 656

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/655 (54%), Positives = 469/655 (71%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ + P+GDQP AI  L+  I   +K Q LLGVTGSGKT+TMA +IE +Q+P I++A
Sbjct: 4   FKIESKFKPTGDQPQAIESLVNSIERGDKGQTLLGVTGSGKTYTMANIIERVQKPTIILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP+N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFKEFFPNNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G   E+ E++  L++ QY+R 
Sbjct: 124 SATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRTGMEKERDEIIRKLIEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG+FRV GDS++I P+   +   RV  FG++IE I EF  LTG  +     + I 
Sbjct: 184 DIDFARGSFRVRGDSLDIIPASSSNKGIRVEFFGDEIERIREFDVLTGNILGERNHVSIS 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T    L  A+K I++EL+ RL EL  + +LLEAQRL QR  YD+EM+   G C 
Sbjct: 244 PASHFATSPEVLEKAIKSIEDELEDRLRELNSQEKLLEAQRLRQRTNYDIEMIREMGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR+PG PP TL +Y P+D L+F+DESHVT+PQ   MY GD  RK TL EY
Sbjct: 304 GIENYSRILDGRDPGTPPQTLLDYFPDDYLMFIDESHVTLPQCRAMYAGDRSRKDTLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+F E+       + VSATP  +E++     I EQ+IRPTGL+DP +E
Sbjct: 364 GFRLPCAYDNRPLKFPEFEEKMNQVVFVSATPSQYEIDHSTN-IAEQVIRPTGLIDPVIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+Y EI    ++G R L+T LTKRMAEDLT+YL +  I+  YMHS+++T+E
Sbjct: 423 IRPVQGQIDDLYAEIKKTTEKGFRTLITTLTKRMAEDLTKYLKDLGIKTTYMHSDIETIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMKIIRDLRLGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+YAD ITKS+  AI ET RRRE Q+++N++H I PQ++ +++ EVI+   + +
Sbjct: 543 NSESKVIMYADNITKSMNKAIKETERRREIQIKYNEEHGITPQTIIKEVREVIEATKVSE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    A+++S   KK      +  ++M  AA NL FE AA +RD I  LKS
Sbjct: 603 EKVEYKVEGAKKVSEKDKKKLIKKYT--EEMMEAAKNLQFERAAELRDIINDLKS 655


>gi|308175247|ref|YP_003921952.1| excinuclease ABC subunit B [Bacillus amyloliquefaciens DSM 7]
 gi|307608111|emb|CBI44482.1| excinuclease ABC (subunit B) [Bacillus amyloliquefaciens DSM 7]
 gi|328555219|gb|AEB25711.1| excinuclease ABC subunit B [Bacillus amyloliquefaciens TA208]
 gi|328913580|gb|AEB65176.1| excinuclease ABC (subunit B) [Bacillus amyloliquefaciens LL3]
          Length = 661

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/656 (54%), Positives = 470/656 (71%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L+KGI    K Q LLG TG+GKTFT++ +I+ + +P +V+A
Sbjct: 5   FELVSKYQPQGDQPQAIEKLVKGIQEGRKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y +M+V L+    +E+ ELL  LV  QY R 
Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYREMVVSLRPEMEIERNELLRKLVDIQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ + + + + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I++EL+ RL  + + G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTRAEKMEKAILNIEQELEERLKVMRENGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PG  P TL +Y P+D ++ VDESHVTIPQ+ GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       + VSATPG +E+E    +I EQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTPEMI-EQIIRPTGLLDPLID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N   +VI+YAD IT S+++AI+ET RRRE+Q   N+ H I PQ++ ++I +VI      E
Sbjct: 544 NAEGRVIMYADKITHSMEIAINETKRRREQQERFNEIHGITPQTINKEIRDVIRATQAAE 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           D          +   ++KK+ +  ++ +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 DKEEYKTKAAPKLAKMTKKERQKVVEQMEHEMKEAARALDFERAAELRDLLLELKA 659


>gi|302206072|gb|ADL10414.1| Excinuclease ABC subunit B [Corynebacterium pseudotuberculosis
           C231]
 gi|308276310|gb|ADO26209.1| excinuclease ABC subunit B [Corynebacterium pseudotuberculosis I19]
          Length = 699

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/662 (54%), Positives = 472/662 (71%), Gaps = 9/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQPAAI +L   +   E+  +LLG TG+GK+ T A +IE  QRP +VMA
Sbjct: 28  FHVVSEYKPAGDQPAAIEELDARLDRGERDVVLLGATGTGKSATAAWLIEQQQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 88  PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT SLL R D +VVSSVSCIYG+G+ +SY    V LK+G+ VE+   L  LV  QY R 
Sbjct: 148 RATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVMLKVGEEVERDRFLRLLVDIQYDRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DIG  RGTFRV GD+++I P++ E+VA RV  FG++I+ +   +PLTG  IR VE ++I+
Sbjct: 208 DIGFTRGTFRVKGDTVDIIPAY-EEVAVRVEFFGDEIDALYYIHPLTGDVIRRVEEVRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A++ IKEEL  RL +LE  G+LLEAQRL  R  YDLEM+E  G C 
Sbjct: 267 PATHYVAGLERMAKAIEGIKEELADRLTDLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  G  P TL +Y P D L  +DESHVT+PQI GM+ GD  RK  L E+
Sbjct: 327 GIENYSRHLDGREAGSAPATLLDYFPADFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR+EE+      T+ +SATPG +EL    G  VEQ+IRPTGL+DP ++
Sbjct: 387 GFRLPSALDNRPLRWEEFEQRVGQTVYMSATPGDYELAAAGGEYVEQVIRPTGLLDPKID 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    Q+  R+L+T LTK+MAEDLT+YL E N+RVRY+HS++ TL+
Sbjct: 447 VRPTKGQIDDLIHEIRQRTQKQERVLVTTLTKKMAEDLTDYLLENNVRVRYLHSDIDTLQ 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTKSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738
           NV+ +VI+YAD +T S+Q AIDET RRREKQ+ +N +H I+PQ +++KI +++D +    
Sbjct: 567 NVSGEVIMYADRVTDSMQYAIDETERRREKQIAYNTEHGIDPQPLRKKIADILDQVQEAR 626

Query: 739 EDAATTNISIDA-----QQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            + A+   S DA     + LS +   K +  +  L  QM  AA  L FE A R+RDEI  
Sbjct: 627 GETASQEASADAAIAEKRDLSAMPADKLEVLISELTAQMGEAARELKFELAGRLRDEIVD 686

Query: 793 LK 794
           LK
Sbjct: 687 LK 688


>gi|288870822|ref|ZP_06115431.2| excinuclease ABC subunit B [Clostridium hathewayi DSM 13479]
 gi|288865783|gb|EFC98081.1| excinuclease ABC subunit B [Clostridium hathewayi DSM 13479]
          Length = 683

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/682 (52%), Positives = 476/682 (69%), Gaps = 12/682 (1%)

Query: 123 WTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182
           W+P +        K    F++ ++Y P+GDQP AI  L+KG     + Q LLGVTGSGKT
Sbjct: 14  WSPRKE-------KAKMEFKLHSEYQPTGDQPQAIEALVKGFQEGNQFQTLLGVTGSGKT 66

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242
           FTMA VI+ +Q+P +++A NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYVP TD
Sbjct: 67  FTMANVIQRIQKPTLIIAHNKTLAAQLYSEFKEYFPENAVEYFVSYYDYYQPEAYVPSTD 126

Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302
           TYIEK+S+IN++ID++RHSAT +L ER D I+V+SVSCIYG+GS   Y +M++ L+ G  
Sbjct: 127 TYIEKDSAINDEIDKLRHSATAALSEREDVIIVASVSCIYGLGSPIDYKEMVISLRPGME 186

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
            ++ E++  L+  QY R D+   RG+FRV GD +EI+P++    A+RV  FG+++E I+E
Sbjct: 187 KDRDEVIHKLIDIQYTRNDMDFKRGSFRVRGDVLEIYPAYSGGDAYRVEFFGDEVERITE 246

Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
              LTG+    +  I I+  SHYV  +  +  A + I  ELK ++   + E +LLEAQR+
Sbjct: 247 IDSLTGEGKAELGHIAIFPASHYVVSKEKMELATQTILAELKEQVAYFKSEDKLLEAQRI 306

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482
            +R  +D+EM+  TG C  IENYSR+LTG  PGEPP TL +Y P+D L+ VDESH+T+PQ
Sbjct: 307 SERTNFDVEMMRETGFCSGIENYSRHLTGSLPGEPPCTLIDYFPDDFLIIVDESHITLPQ 366

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542
           + GM+ GD  RK TL  YGFRLPS +DNRPL FEE+       + VSATP  +E    + 
Sbjct: 367 VRGMFAGDRSRKTTLVNYGFRLPSALDNRPLNFEEFESKIDQMMFVSATPSVYEANH-EM 425

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           + VEQIIRPTGL+DP +E+R    Q++D+  E+N       +IL+T LTKRMAEDLT+Y+
Sbjct: 426 LRVEQIIRPTGLLDPEIEVRPVEGQIDDLVSEVNKEVANKHKILITTLTKRMAEDLTDYM 485

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            E  IRV+Y+HS++ TLER EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKE
Sbjct: 486 REIGIRVKYLHSDIDTLERSEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKE 545

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
           GFLRS+TSLIQT+GRAARN    VI+YAD+IT S+++AI+ET RRR  Q ++N++H I P
Sbjct: 546 GFLRSETSLIQTVGRAARNSEGHVIMYADSITDSMRVAIEETNRRRAIQQQYNEEHGITP 605

Query: 723 QSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
            ++K+ + ++I   + + A     S +    S+  K+ +   K L K+MH AA  LNFEE
Sbjct: 606 TTIKKSVRDLI--AISKAAIEDKKSFEKDPESMDAKELEKLAKELTKKMHQAAAELNFEE 663

Query: 783 AARIRDEIKRLKSSPYFQGLDD 804
           AAR+RD +  +K     Q LD+
Sbjct: 664 AARLRDRMVEVKK--MLQELDE 683


>gi|256829853|ref|YP_003158581.1| excinuclease ABC subunit B [Desulfomicrobium baculatum DSM 4028]
 gi|256579029|gb|ACU90165.1| excinuclease ABC, B subunit [Desulfomicrobium baculatum DSM 4028]
          Length = 670

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/668 (52%), Positives = 466/668 (69%), Gaps = 3/668 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ++++Y P GDQPAAI  L  GI    + Q+LLGVTGSGKTFTM  VI  + RPA+
Sbjct: 1   MSLFQLESEYVPRGDQPAAIDALCSGIRQGVRDQVLLGVTGSGKTFTMGHVIARLDRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MAPNK LAAQLY+EFK  FP NAVEYFVSYYDYYQPEAY+P +DTYIEK+S+IN+ ID+
Sbjct: 61  IMAPNKTLAAQLYNEFKGLFPRNAVEYFVSYYDYYQPEAYLPHSDTYIEKDSAINDDIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+AT +LL R D I+++SVSCIYG+GS E Y++M++ ++ G  V  + ++  LV  QY
Sbjct: 121 LRHAATHALLTRRDVIIIASVSCIYGLGSPEYYAKMVIPVECGQHVAMETVIGRLVDVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D  + RGTFRV GD +EI P++  + A R+  FG++I+ I E  PLTG+ +  V+  
Sbjct: 181 ERNDYDLHRGTFRVRGDVLEIIPAYEHEQALRLEFFGDEIDGIYETDPLTGEILSRVQKT 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SHYV+ R  L  AM  I++EL++RL   +    L+EAQRLEQ+   DLEM+E  G
Sbjct: 241 VIYPASHYVSDRDNLVRAMADIRDELRLRLQYFQDNNMLVEAQRLEQKTQLDLEMIEELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYS +L GR  G+PP TL +Y P+D LLF+DESH+++ Q+  M++GD  RK TL
Sbjct: 301 YCNGIENYSLHLDGRRTGQPPSTLIDYFPKDFLLFMDESHISVSQVGAMFKGDRSRKQTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL FEE+     TT+ VSATP  WELE+ QG++VEQIIRPTGLVDP
Sbjct: 361 VDYGFRLPSALDNRPLNFEEFLERIGTTVFVSATPAPWELERAQGVVVEQIIRPTGLVDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+     Q++ +  +         R+++T LTKRMAEDLTE+L  R +R RY+HS++ 
Sbjct: 421 QIEVVPTAGQMDHLMAQCLARIAVDERVMVTTLTKRMAEDLTEFLQARGVRARYLHSDID 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+ II+ LR G+FDVLVGINLLREGLDIPE  LVA+LDADKEGFLRS  SLIQT GR
Sbjct: 481 TLERVAIIQALRAGEFDVLVGINLLREGLDIPEVSLVAMLDADKEGFLRSTRSLIQTFGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  KV+LYADT+T+S+  A+ ET RRRE+Q  +N++H I PQS+++     +  + 
Sbjct: 541 AARNVKGKVLLYADTVTRSMAEAMGETQRRRERQTLYNEEHGITPQSIRKTSENTLYDLH 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            E       +          +     +  L ++M  AA+ L FEEAARIRD IK L+   
Sbjct: 601 REIKEQERAAERTADYDPGPENAAKEVARLSREMRKAAEMLEFEEAARIRDRIKTLEKR- 659

Query: 798 YFQGLDDS 805
              GLD S
Sbjct: 660 --YGLDGS 665


>gi|21324137|dbj|BAB98762.1| Helicase subunit of the DNA excision repair complex
           [Corynebacterium glutamicum ATCC 13032]
          Length = 699

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/673 (53%), Positives = 479/673 (71%), Gaps = 11/673 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +++ P+GDQPAAI +L + +   E+  +L+G TG+GK+ T A +IE  QRPA+VMA
Sbjct: 28  FVVVSEFEPAGDQPAAIKELDERLDRGERDVVLMGATGTGKSATAAWLIEKQQRPALVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH
Sbjct: 88  PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ +SY    V L +G+ +++   L  LV  QY+R 
Sbjct: 148 SATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLNVGEEIDRDRFLRLLVDIQYERN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+G  RG FRV GD+++I P++ E++A R+  FG++I+ +   +PLTG  IR V  I+I+
Sbjct: 208 DVGFTRGAFRVKGDTVDIIPAY-EELAVRIEFFGDEIDALYYIHPLTGDTIRQVNEIRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  IK EL++RL +LE  G+LLEAQRL  R  YDLEM+E  G C 
Sbjct: 267 PATHYVAGPERMEKAVADIKAELEVRLADLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM+ GD  RK  L E+
Sbjct: 327 GIENYSRHIDGRGEGTAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL +EE++  R  T+ +SATPG +E+    G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSAMDNRPLTWEEFDERRGQTVFMSATPGKFEIAAADGEFVEQVIRPTGLVDPKVT 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI     +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ TL+
Sbjct: 447 VKPTKGQIDDLIHEIRQRTDKDERVLVTTLTKKMAEDLTDYLLENGIRVRYLHSDIDTLQ 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738
           NV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +NK+H I+PQ +++KI +++D +    
Sbjct: 567 NVSGEVIMYADKITDSMQYAIEETDRRREKQVAYNKEHGIDPQPLRKKIADILDQVYDNS 626

Query: 739 EDAATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            D A  + S DA  +      S+  K+ +  +  L  QM  AA  L FE A R+RDEI  
Sbjct: 627 ADGAGPSASGDAAVVAKPDVSSMPAKEVQKLIDDLSAQMAAAARELKFELAGRLRDEIFE 686

Query: 793 LKSSPYFQGLDDS 805
           LK     +G+ D+
Sbjct: 687 LKKE--LRGIKDA 697


>gi|259047451|ref|ZP_05737852.1| excinuclease ABC subunit B [Granulicatella adiacens ATCC 49175]
 gi|259035642|gb|EEW36897.1| excinuclease ABC subunit B [Granulicatella adiacens ATCC 49175]
          Length = 660

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/658 (54%), Positives = 470/658 (71%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P GDQP AI +L++G++   K Q LLG TG+GKTFT+A VI+ + +P +V+A
Sbjct: 4   FKLVAPYTPQGDQPQAIQELVEGLNKGVKEQTLLGATGTGKTFTIANVIKEVNKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYIEKESS+N++ID++RH
Sbjct: 64  HNKTLAGQLYGELKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKESSVNDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D IVV+SVS +YG+ + E Y   ++ L+ G  +E+ ELL  LV+ Q++R 
Sbjct: 124 SATSALLERRDVIVVASVSSMYGLVNPEDYRDHVLSLREGMEIERDELLRRLVEMQFERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD +EIF +  +  A+R+  FG++IE I E   LTG+    VE + I+
Sbjct: 184 DYDFRRGTFRVRGDVVEIFLAGHDATAFRIEFFGDEIEAIKEVDVLTGEIKATVEHVPIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+V     ++ A+  IKEEL +RL EL     LLEAQRLEQR  YD+EML   G C 
Sbjct: 244 PATHFVANEDQISKAVSTIKEELALRLKELRDNNELLEAQRLEQRTNYDIEMLLEMGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG+PP TL ++ PED+L  VDESH+T+ QI GMY GD  RK  L +Y
Sbjct: 304 GIENYSRHMDGRKPGQPPYTLLDFFPEDALFVVDESHITMSQIRGMYNGDRARKEQLIKY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+    P  I +SATPG +EL      + EQIIRPTGL+DPPVE
Sbjct: 364 GFRLPSALDNRPLRFEEFEAKVPQIIYISATPGPYELAHTPK-VTEQIIRPTGLLDPPVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EINL  ++  R+ +T LTK+M+EDLT+YL E  I+V+Y+HS++KTLE
Sbjct: 423 VRPIKGQIDDLISEINLRVERNERVFITTLTKKMSEDLTDYLEEVGIKVKYLHSDIKTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ +L+QTIGRAAR
Sbjct: 483 RTEIIRNLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERALVQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N N +VI+YAD IT S+Q AIDET RRR  Q  +NK+H I P+++ + I ++I     + 
Sbjct: 543 NANGRVIMYADKITDSMQRAIDETNRRRSVQEAYNKEHGIVPKTIVKNIRDLIAITHEVE 602

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            EDA +T  + D +++S  +++    L  L   M  AA  L+FE+AA +RD I  L++
Sbjct: 603 KEDAPST--AKDFKKMSQEQRREAIELLEL--DMRAAAKALDFEKAADLRDVILELRA 656


>gi|310657817|ref|YP_003935538.1| excinulease of nucleotide excision repair [Clostridium sticklandii
           DSM 519]
 gi|308824595|emb|CBH20633.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Clostridium sticklandii]
          Length = 654

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/658 (53%), Positives = 478/658 (72%), Gaps = 11/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AI  +++ I S  K Q LLGVTGSGKTFTMA +IE  Q+P +V+A
Sbjct: 3   FKIVSDYKPMGDQPQAIDTMVRSIESGAKHQTLLGVTGSGKTFTMANIIERTQKPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV  +DTYIEK+SSIN++ID++RH
Sbjct: 63  HNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVAHSDTYIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT ++LER D I+V+SVSCIYG+G    Y +M+V L+ G + ++ +++  LV+ QY+R 
Sbjct: 123 SATAAVLERRDVIIVASVSCIYGLGDPSDYEEMMVSLRPGQNKDRDDVIKELVEIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +RGTFRV GD IEI P + ++   R+  FG++IE ISE   +TG+ +     + I+
Sbjct: 183 DINFVRGTFRVRGDIIEILPINTDERGIRIEFFGDEIERISEIDYITGEIVGVRNHVAIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +  L  A++ I+ EL+ R+   ++    LEAQR+EQR  YDLEML+  G+C+
Sbjct: 243 PASHYVTSKEKLAKAIEKIEVELEERIEYFKERDMFLEAQRIEQRTKYDLEMLKEIGTCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR+ GE P TL ++ P+D L+ +DESHV +PQ+  MY GD  RK TL +Y
Sbjct: 303 GIENYSRHLSGRDEGERPFTLMDFFPDDFLIIIDESHVMLPQLHAMYAGDRSRKGTLIDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRFEE+  +    + VSATP  +E+E       EQ+IRPTGLVDP +E
Sbjct: 363 GFRLPSAFDNRPLRFEEFEQVANQILYVSATPSKYEMEHSVA-FGEQVIRPTGLVDPEIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EIN   ++  R+L+T LTK+M+E+LT+YL E +++VRY+HS+++TLE
Sbjct: 422 IRPIKGQIDDLLFEINERVKKKERVLITTLTKKMSENLTQYLKEASVKVRYLHSDIETLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT+GRAAR
Sbjct: 482 RIEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTVGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD +T S+Q AI ET RRRE Q+ +NK++NI P ++ ++I  VI       
Sbjct: 542 NSNGKVIMYADNMTGSMQRAITETYRRREIQINYNKENNITPTTIFKEIRGVI------- 594

Query: 741 AATTNISIDAQ---QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AAT+    +     + ++ +++ K  +  L  +M  AA+ L FE+AA +RD I+ L+S
Sbjct: 595 AATSAAEGEGNYSVRETIDRERVKDEIIKLSTEMVEAAEALEFEKAASLRDRIRELES 652


>gi|325264764|ref|ZP_08131493.1| excinuclease ABC subunit B [Clostridium sp. D5]
 gi|324030056|gb|EGB91342.1| excinuclease ABC subunit B [Clostridium sp. D5]
          Length = 662

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/664 (52%), Positives = 479/664 (72%), Gaps = 5/664 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AIA L++G     + + LLGVTGSGKTFTMA VI+A+ +P +++A
Sbjct: 4   FELVSEYAPTGDQPQAIADLVQGFKEGNQFETLLGVTGSGKTFTMANVIQALNKPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DTYI K+S+IN++ID++R 
Sbjct: 64  HNKTLAAQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSAINDEIDKLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y  M++ L+ G + ++ E+++ L++ QY R 
Sbjct: 124 SATMALAERRDVIIVASVSCIYGLGSPMDYQNMVISLRPGMTRDRDEVMAKLIEIQYDRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGTFRV GD +E+ P++ ED A R+  FG+++E I+E   LTG+    ++ I I+
Sbjct: 184 EMDFHRGTFRVRGDVLEVIPAYSEDTAIRIEWFGDEVERITEIDILTGEIKDELKHIAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  +  +  A+  I++EL+ R+ E +++ +LLEAQR+ +R  +D+EML+ TG C 
Sbjct: 244 PASHYVVDKENIARAVTAIEKELEERVKEFKRQDKLLEAQRIAERTNFDIEMLKETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L G  PG+PP TL +Y P+D ++ +DESH TIPQI GMY GD  RK+TL ++
Sbjct: 304 GIENYSRHLAGLAPGQPPYTLIDYFPDDFIIMIDESHKTIPQIGGMYSGDQSRKSTLVDF 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F+E+       + VSATP  +E E+ + +  EQ+IRPTGL+DP V 
Sbjct: 364 GFRLPSAKDNRPLNFQEFESKINQVMFVSATPNVYE-EEHELLRTEQVIRPTGLLDPEVT 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N    +  ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS V TLE
Sbjct: 423 VRPVEGQIDDLIGEVNKEIAKKNKVLVTTLTKRMAEDLTDYMREVGIRVKYLHSGVDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 483 RTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSATSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADTIT S++ A++ET RRRE Q+++N++H I PQ++++ + ++I   + + 
Sbjct: 543 NAEGHVIMYADTITDSMRTAMEETQRRREIQMQYNEEHGITPQTIQKSVRDLIS--ISKK 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
            A   + ++    S+S+K+ +  +  L KQM  AA  LNFE AA +RD++  LK      
Sbjct: 601 VAAEEMRMEKDPESMSRKELEKLISDLSKQMKKAAAELNFESAAELRDKLVELKK--VLN 658

Query: 801 GLDD 804
           GLDD
Sbjct: 659 GLDD 662


>gi|255324628|ref|ZP_05365745.1| excinuclease ABC subunit B [Corynebacterium tuberculostearicum
           SK141]
 gi|255298534|gb|EET77834.1| excinuclease ABC subunit B [Corynebacterium tuberculostearicum
           SK141]
          Length = 697

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/661 (53%), Positives = 473/661 (71%), Gaps = 9/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y P+GDQPAAIA+L + ++  E+  +L+G TG+GK+ T A +IE  QRP +VMA
Sbjct: 28  FQVVSEYEPAGDQPAAIAELDERLNRDERDVVLMGATGTGKSATAAWLIEKQQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH
Sbjct: 88  PNKTLAAQLANELRQLLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VVSSVSCIYG+G+ +SY    V + + + +++   L  LV  QY+R 
Sbjct: 148 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVIISVDEELDRDRFLRLLVDIQYERN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+G  RGTFR  GD+++I P++ E+ A R+  FG+DI+ +   +P+TG  I  V+ ++I+
Sbjct: 208 DVGFTRGTFRAKGDTVDIIPAY-EERAVRIEFFGDDIDSLYYIHPVTGDVIEEVDEVRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  IKEEL  RL +LE  G+LLEAQRL  R  YDLEM+E  G C 
Sbjct: 267 PATHYVAGPERMEKAVAAIKEELAERLEDLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM+ GD  RK  L E+
Sbjct: 327 GIENYSRHVDGRPAGSAPATLLDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+      T+ +SATPG +EL    G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSAVDNRPLTFDEFEQRVGQTVYMSATPGDFELTSSDGEYVEQVIRPTGLVDPKVT 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  ++Q++D+ DE+     Q  R+L+T LTKRMAEDLT+YL E+ I+VRY+HS++ TL+
Sbjct: 447 VKPTKSQIDDLIDEVRTRISQQERVLVTTLTKRMAEDLTDYLLEQGIKVRYLHSDIDTLQ 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +NK+H I+PQ +++KI +++D +  ED
Sbjct: 567 NVSGEVIMYADKITDSMQEAIEETERRREKQIAYNKEHGIDPQPLRKKIADILDQV-YED 625

Query: 741 AATTNISIDAQQL-------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                 + D   +       S++  + +A +  L  QM  AA  L FE A R+RDEI  L
Sbjct: 626 GGDEESNSDPSAVVEKRDISSMATDEVQALIDDLSAQMGAAARELKFELAGRLRDEIADL 685

Query: 794 K 794
           K
Sbjct: 686 K 686


>gi|317055166|ref|YP_004103633.1| excinuclease ABC subunit B [Ruminococcus albus 7]
 gi|315447435|gb|ADU20999.1| excinuclease ABC, B subunit [Ruminococcus albus 7]
          Length = 656

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/655 (54%), Positives = 466/655 (71%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY  SGDQP A+  L+KG+ S  K Q LLGVTGSGKTFTMA VIE + RP +V+A
Sbjct: 4   FQLVSDYKLSGDQPEAVDALVKGVESGMKEQTLLGVTGSGKTFTMANVIERLNRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NKILAAQL SEFK FFP+NAVEYFVSYYDYYQPEAYVP TD YIEK+SSIN++ID++RH
Sbjct: 64  HNKILAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDVYIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT ++ ER D I+V+SVSCIY +G    Y  M+V ++ G    + EL++ LVK QY+R 
Sbjct: 124 SATTAITERRDVIIVASVSCIYSLGDPSEYKSMVVSIRKGAEKSRDELIAELVKIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +R  FRV GD +EIFP+   D A RV  FG++I+ I E   LTG+ +  +    ++
Sbjct: 184 DINFVRNKFRVRGDVVEIFPADSTDKALRVEFFGDEIDRICEVNVLTGEVLSTLNHAAVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+  R  +  A+  IKEEL  R+   E  G L+EAQR++QR  YD+EMLE  G C 
Sbjct: 244 PASHYIVGREKMLDAIDEIKEELAERVKCFEDRGMLIEAQRIQQRTNYDMEMLEEIGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L  R+ G  P TLF+++P+D LL VDESHV++PQ+ GM+ GD  RK TL +Y
Sbjct: 304 GIENYSRVLARRSKGAVPFTLFDFMPDDFLLMVDESHVSLPQVRGMFAGDRARKQTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       I VSATPG  E E+ Q  IVEQ+IRPTGL+DP + 
Sbjct: 364 GFRLPSALDNRPLQFDEFYERINQAIFVSATPGPIEKEKSQQ-IVEQVIRPTGLLDPLIS 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q+ED+  EIN   ++G R+L+T LTK+MAEDLT YL   +++VRYMH ++ T+E
Sbjct: 423 VRPTDGQIEDLLGEINKRVEKGQRVLVTTLTKKMAEDLTAYLKGFDVKVRYMHHDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS++SLIQTIGRAAR
Sbjct: 483 RMEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSESSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD++T+S++ AI ET RRR  Q ++N++H I P+++ + I +VI+    E+
Sbjct: 543 NSEGMVIMYADSVTRSMESAIRETERRRAIQEKYNEEHGIVPKTIVKDIRDVIEISTKEE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A  +      Q + LSK + +  +  L ++M  AA  L FE AA +RD I  LK 
Sbjct: 603 AEYSA----RQAVKLSKAEQQKLIDKLTREMKEAAKLLEFEHAAFLRDRIAELKG 653


>gi|297583389|ref|YP_003699169.1| excinuclease ABC subunit B [Bacillus selenitireducens MLS10]
 gi|297141846|gb|ADH98603.1| excinuclease ABC, B subunit [Bacillus selenitireducens MLS10]
          Length = 665

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/656 (53%), Positives = 472/656 (71%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++ Y P+GDQP AI +L++GI  ++  Q LLG TG+GKTFT++ V++ + RP +V+A
Sbjct: 9   FQLESKYSPAGDQPKAIEELVRGIEEKKTFQTLLGATGTGKTFTVSNVVKEINRPTLVIA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+N VEYFVSYYDYYQPEAY+P++DTYIEK++SIN++ID++RH
Sbjct: 69  HNKTLAGQLYSEFKEFFPNNRVEYFVSYYDYYQPEAYIPQSDTYIEKDASINDEIDKLRH 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ERND ++V+SVSCIYG+GS E Y  ++V L+ G   ++ +LL  LV  QY+R 
Sbjct: 129 SATSALFERNDVLIVASVSCIYGLGSPEEYRDLVVSLRTGMERDRNQLLRQLVDVQYERN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++I+ I+E   LTG+ +   + + I+
Sbjct: 189 DINFTRGTFRVRGDVVEIFPASRDEHCLRVEFFGDEIDRITEVDALTGEILGERDHVAIF 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A+  I+ EL+ RL EL    +LLEAQRLEQR  YD+EM+   G C 
Sbjct: 249 PASHFVTREEKLKRAIVNIEAELEERLKELHANDKLLEAQRLEQRTRYDIEMMHEMGYCS 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PG  P TL +Y P+D L+ VDESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 309 GIENYSRHLTFREPGATPYTLLDYFPDDFLIVVDESHVTLPQVRGMYNGDQARKQVLVDH 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+       + +SATPG +ELE+    + EQIIRPTGL+DP V+
Sbjct: 369 GFRLPSAKDNRPLKFEEFEDHIHQALFISATPGPYELEKNPE-MTEQIIRPTGLLDPTVD 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ +EI L A++  R+L+T LTK+M+EDLT+YL E  IRV+Y+HS++KTLE
Sbjct: 428 VRPIEGQIDDLLEEIRLRAERDERVLVTTLTKKMSEDLTDYLKEVGIRVQYLHSDIKTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI+IIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQT+GRAAR
Sbjct: 488 RIQIIRDLRRGDFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTMGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N N  VI+YAD IT+S+ +AI ET RRR  Q  +N++H I P ++ + I E+I      +
Sbjct: 548 NSNGHVIMYADKITRSMDVAISETKRRRSIQEAYNEEHGITPMTIVKAIPELIQATRAAD 607

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +         A Q  LSKK+ +  ++ + K+M  AA  L+FE AA +RD +  LK+
Sbjct: 608 EEEAFEAFTKAPQEKLSKKEREKVIERMEKEMKEAAKELDFERAAELRDIVLELKA 663


>gi|81428136|ref|YP_395135.1| excinuclease ABC subunit B [Lactobacillus sakei subsp. sakei 23K]
 gi|90111040|sp|Q38YA4|UVRB_LACSS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|78609777|emb|CAI54823.1| Excinuclease ABC, subunit B [Lactobacillus sakei subsp. sakei 23K]
          Length = 667

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/661 (54%), Positives = 470/661 (71%), Gaps = 8/661 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F +   Y P+GDQPAAI  L K   +  K Q+L+G TG+GKTFTM+ VI+ + +P ++
Sbjct: 8   NLFDLVAPYEPAGDQPAAIETLTKNFEAGAKAQVLMGATGTGKTFTMSNVIKNLNKPTLI 67

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           ++ NK LA QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++
Sbjct: 68  ISHNKTLAGQLYAEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKL 127

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSAT SLLERND IVV+SVSCI+G+G    Y   ++ L+ G  VE+ +LL  LV  Q++
Sbjct: 128 RHSATSSLLERNDVIVVASVSCIFGLGDPREYQNHVLSLRPGMEVERNDLLRQLVDIQFE 187

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RG FRV GD +EIFP+  +D A RV  FG++I+ I E   LTG+ I     + 
Sbjct: 188 RNDIDFQRGRFRVRGDVVEIFPASRDDHALRVEFFGDEIDRIVEVDALTGEVIGERSHVA 247

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  +H++T    +  A++ IK EL  RL  L+ EG+LLEAQRLEQR  YDLEM++  G 
Sbjct: 248 IFPATHFMTNDEKMEKAIESIKAELAERLAVLKGEGKLLEAQRLEQRTNYDLEMMQEMGY 307

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR++  R  GEPP TL ++ P+DS++ +DESHVT+PQI GMY GD  RK  L 
Sbjct: 308 CSGIENYSRHMEDRQAGEPPYTLLDFFPKDSIMMIDESHVTMPQIRGMYNGDRARKQMLI 367

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL   E+       + VSATPG +E EQ   I V+QIIRPTGL+DP 
Sbjct: 368 DYGFRLPSALDNRPLTLPEFEEHVNEIMYVSATPGPYEAEQTD-IQVDQIIRPTGLLDPN 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    Q++D+  EIN   ++  R+ +T LTK+M+EDLT+YL E  I+VRY+HS++KT
Sbjct: 427 IEVRPIMGQIDDLVGEINDRIEKNERVFITTLTKKMSEDLTDYLKELGIKVRYLHSDIKT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER EIIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 487 LERTEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSERSLIQTIGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           +RN + +V+LYAD IT S++ AIDET RRR  Q ++N  HNI P+++ + I + I  +  
Sbjct: 547 SRNEHGQVLLYADKITDSMRHAIDETKRRRTIQEDYNTAHNITPKTIIKPIRDAISMVQS 606

Query: 739 ----EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               E+   TN  ID +  ++SK +    ++ L +QM LAA  L+FE+AA +RD I  LK
Sbjct: 607 VEHPEEIKMTN-EIDLE--NMSKAEKLEMVERLSEQMRLAAKKLDFEQAATLRDTILELK 663

Query: 795 S 795
           S
Sbjct: 664 S 664


>gi|169824598|ref|YP_001692209.1| UvrABC system protein B [Finegoldia magna ATCC 29328]
 gi|303235209|ref|ZP_07321828.1| excinuclease ABC, B subunit [Finegoldia magna BVS033A4]
 gi|167831403|dbj|BAG08319.1| UvrABC system protein B [Finegoldia magna ATCC 29328]
 gi|302493696|gb|EFL53483.1| excinuclease ABC, B subunit [Finegoldia magna BVS033A4]
          Length = 656

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/657 (52%), Positives = 475/657 (72%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L  G+ + +  Q+L GVTGSGKTFTMA +I+ +QRP +V+A
Sbjct: 3   FKLHSKFKPTGDQPQAIDKLANGLENGKNHQILKGVTGSGKTFTMANIIQKVQRPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL SEF+ FFP NAVE+FVSYYDYYQPEAYV ++DTYIEK+SSINE++D++RH
Sbjct: 63  HNKTLAYQLASEFREFFPENAVEFFVSYYDYYQPEAYVVQSDTYIEKDSSINEELDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+VSSVSCIYG+G    Y  +++ L+ G   ++ E++  L+  QY R 
Sbjct: 123 SATMSLFERRDVIIVSSVSCIYGLGDPIDYENLVISLRPGMEKDRTEVMKKLIDIQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GDS++IFP+   + + R+  FG++I+ I+E   LTG+ +     + IY
Sbjct: 183 DINFTRGTFRVRGDSLDIFPASSGEKSVRIEFFGDEIDRITEIDALTGEIVGERNHVAIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T +  +  A+  I+EEL+ RL   +   +LLEAQRLEQR  YD+EML+  G C 
Sbjct: 243 PASHYATTQKKVEKAIVTIEEELEDRLKYFKDHNKLLEAQRLEQRTRYDIEMLKEMGFCT 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++ R PG  P TL +Y P+D +  +DESHVT+PQI GMY GD  RK +L +Y
Sbjct: 303 GIENYSRHMSQRKPGSRPYTLIDYFPKDFVTMIDESHVTVPQIGGMYEGDRSRKTSLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  +    I VSATPG +E  +    +VEQ+IRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLKFSEFESMMNQVIYVSATPGKYEKAKTNE-VVEQVIRPTGLLDPKIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN   ++G R+L+T LTK+M+EDLT YL + +I+V Y+HS++ T+E
Sbjct: 422 VRPTKGQIDDLVSEINKTIEKGERVLITTLTKKMSEDLTRYLEDLDIKVTYLHSDIDTIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR GK+DVLVGINLLREGLD+PE  L+AILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RMEIIRDLREGKYDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+Y DTIT+S+ +AI ET RRRE Q E+NK+HNI P ++ + + + I    +  
Sbjct: 542 NSNGHVIMYGDTITRSMDVAITETNRRREIQEEYNKEHNITPTTINKSVRKRIQNTFV-- 599

Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A  N + DA +++  SK + +  +++L  +M  AA+ L+FE AA +RD+I+ LK++
Sbjct: 600 -AEENENYDANKVTEFSKDEIEVIIENLNTEMLKAAEELDFERAATLRDQIRNLKNT 655


>gi|154687631|ref|YP_001422792.1| excinuclease ABC subunit B [Bacillus amyloliquefaciens FZB42]
 gi|189037951|sp|A7Z985|UVRB_BACA2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|52673266|emb|CAH56506.1| UvrABC system protein B [Bacillus amyloliquefaciens FZB42]
 gi|154353482|gb|ABS75561.1| UvrB [Bacillus amyloliquefaciens FZB42]
          Length = 661

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/656 (54%), Positives = 470/656 (71%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L+KGI    K Q L+G TG+GKTFT++ +I+ + +P +V+A
Sbjct: 5   FELVSKYQPQGDQPQAIEKLVKGIQEGRKHQTLMGATGTGKTFTVSNLIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y +M+V L+    +E+ ELL  LV  QY R 
Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYREMVVSLRPEMEIERNELLRKLVDIQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ + + + + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I++EL+ RL  + + G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTRAEKMEKAILNIEQELEERLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PG  P TL +Y P+D ++ VDESHVTIPQ+ GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       + VSATPG +E+E    +I EQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTPEMI-EQIIRPTGLLDPLID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N   +VI+YAD IT S+++AI+ET RRRE+Q   N+ H I PQ++ ++I +VI      E
Sbjct: 544 NAEGRVIMYADKITNSMEIAINETKRRREQQERFNEIHGITPQTINKEIRDVIRATQAAE 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           D          +   ++KK+ +  ++ +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 DKEEYKTKAAPKLAKMTKKERQKVVEQMEHEMKEAARALDFERAAELRDLLLELKA 659


>gi|227545102|ref|ZP_03975151.1| excision endonuclease subunit UvrB [Lactobacillus reuteri CF48-3A]
 gi|300909227|ref|ZP_07126688.1| excision endonuclease subunit UvrB [Lactobacillus reuteri SD2112]
 gi|227184922|gb|EEI64993.1| excision endonuclease subunit UvrB [Lactobacillus reuteri CF48-3A]
 gi|300893092|gb|EFK86451.1| excision endonuclease subunit UvrB [Lactobacillus reuteri SD2112]
          Length = 690

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/659 (52%), Positives = 469/659 (71%), Gaps = 5/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL KGI   EK Q+LLG TG+GKTFT++ VI  + +P ++++
Sbjct: 29  FELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTLILS 88

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 89  HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 148

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y   ++ L++G  +E+  LL+ LV  Q+ R 
Sbjct: 149 SATTSLLERNDVIVVASVSSIFGLGDPREYQNSVLSLRVGQEIERDRLLTELVNIQFDRN 208

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A R+  FG++I+ I E   LTG+ I + + + I+
Sbjct: 209 DIDFQRGRFRVRGDVVEIFPASRDERALRIEFFGDEIDRIREVDALTGEVIGDRDHVSIF 268

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +   EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 269 PATHFMTNEEVMDRALPQIEADMKKQVKKFTDEGKLLEAERIQQRTTYDIEMMREMGYTN 328

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+ GR PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 329 GIENYSRYMDGRKPGEPPYTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 388

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + +SATPG +E+EQ    + +QIIRPTGL+DP VE
Sbjct: 389 GFRLPSALDNRPLKLPEFEQHVNQVVYMSATPGPYEMEQTDH-VAQQIIRPTGLLDPTVE 447

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+M+EDLT+YL +  +RV+Y+HS++KTLE
Sbjct: 448 VRPVMGQIDDLVGEINKRIEKNERVFVTTLTKKMSEDLTDYLKDMGLRVKYLHSDIKTLE 507

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 508 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 567

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738
           N N  VI+YADT+T S+Q A+DET RRR  Q+++N++H+I P ++ + I E I       
Sbjct: 568 NENGAVIMYADTVTDSMQKAMDETKRRRTIQMKYNEEHHITPHTIIKPIQEAITVTKKAT 627

Query: 739 EDAATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           ++A   N +   D     L K+     L  L +QM  AA  L+FE+AA +RD I  LK+
Sbjct: 628 DEAEADNSAEFTDKDFAKLDKEAQAKMLDELTEQMRSAAKRLDFEQAATLRDTIMELKT 686


>gi|329928741|ref|ZP_08282590.1| excinuclease ABC, B subunit [Paenibacillus sp. HGF5]
 gi|328937522|gb|EGG33940.1| excinuclease ABC, B subunit [Paenibacillus sp. HGF5]
          Length = 663

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 472/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+++ P GDQP AI  L++G+   +K Q LLG TG+GKTFT+A+ I  + RP +V+A
Sbjct: 11  FEIQSEFQPQGDQPTAIDALVEGLRQGKKHQTLLGATGTGKTFTIAQTIAKVNRPTLVIA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP+N+V+YFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID++RH
Sbjct: 71  HNKTLAAQLASEFKEFFPNNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSSINEEIDKLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+GS   Y +M++ L++G    + E+LS LV  QY+R 
Sbjct: 131 SATSSLFERRDVIIVASVSCIYGLGSPHEYGEMLLSLRVGMEKPRNEILSRLVDIQYQRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +RGTFRV GD +EIFP+   + A RV +FG++IE I+E   LTG+ +   E I I+
Sbjct: 191 DINFVRGTFRVRGDVVEIFPASKGEHAVRVELFGDEIERITEIDVLTGELVGEREHIAIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT   T+  A+  I+ EL+ RL  L  EG+LLEAQRLEQR  YD+EM++  G C 
Sbjct: 251 PASHFVTREETMRVALVNIERELEERLELLRSEGKLLEAQRLEQRTRYDIEMMKEVGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  LT R PG  P TL +Y P+D L  +DESHVT+PQI  MY GD  RK  L ++
Sbjct: 311 GIENYSGPLTFREPGATPYTLLDYFPDDMLFVIDESHVTLPQIRAMYNGDRARKTVLVDH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       I VSATPG +E+E C   +VEQIIRPTGL+DP ++
Sbjct: 371 GFRLPSALDNRPLKFEEFEEKVNQIIYVSATPGPYEMEHCD-TMVEQIIRPTGLLDPIID 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+    +  R+L+T LTK+MAEDLT+YL E  I+VRYMHS++KTLE
Sbjct: 430 VRPTEGQIDDLIGEIHDRVDRDERVLVTTLTKKMAEDLTDYLKEIGIKVRYMHSDIKTLE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLG F VLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RMQILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+Y D IT S+  AI ET RRR  Q+ +N++H I PQ++++K+ +VI+   + +
Sbjct: 550 NSEGKVIMYGDKITDSMDRAIKETERRRSIQVAYNEEHGITPQTIRKKVRDVIEATKVAE 609

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                +  + Q+  +SKK+ +  ++ L  +M  AA NL FE AA +RD +  L++
Sbjct: 610 GKADYLVGEGQK--MSKKERQKLIQRLEAEMKEAAKNLQFERAAELRDALLELQA 662


>gi|158313885|ref|YP_001506393.1| excinuclease ABC subunit B [Frankia sp. EAN1pec]
 gi|158109290|gb|ABW11487.1| excinuclease ABC, B subunit [Frankia sp. EAN1pec]
          Length = 731

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/689 (51%), Positives = 484/689 (70%), Gaps = 30/689 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ PSGDQPAAI +L + + + EK  +LLG TG+GK+ T A ++E +QRP +VMA
Sbjct: 42  FEVVSDFAPSGDQPAAIEELARRVRAGEKDVVLLGATGTGKSATTAWLVEHLQRPTLVMA 101

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE+++R+RH
Sbjct: 102 PNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEEVERLRH 161

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ + Y   +V+L++GD +E+  LL   V  QY R 
Sbjct: 162 SATMNLLTRRDVVVVASVSCIYGLGTPQEYIDRMVRLRVGDEIERDRLLRRFVDVQYARN 221

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++E+FP + E++A R+ MFG++IE ++  +PLTG+ +R  + + ++
Sbjct: 222 DLAFTRGTFRVRGDTVEVFPVY-EELAVRIEMFGDEIERLTYLHPLTGEIVRESQEVFVF 280

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+ EL  RL ELE +G+LLEAQRL  R TYD+EM+   G C 
Sbjct: 281 PATHYVAGPERMERAIAGIEAELTDRLAELENQGKLLEAQRLRMRTTYDIEMMRQVGFCS 340

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y P+D LL +DESHVT+PQI GMY GD  RK  L ++
Sbjct: 341 GIENYSRHIDGRAAGTAPHTLLDYFPDDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVDH 400

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR+EE+      T+ +SATPG +EL +  G +VEQIIRPTGL+DP + 
Sbjct: 401 GFRLPSAIDNRPLRWEEFLERIGQTVYLSATPGPYELGRGDG-VVEQIIRPTGLLDPEIV 459

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI + A++  RIL+T LTK+M+EDLT+YL E  IRVRY+HSEV TL 
Sbjct: 460 LKPTKGQIDDLVHEIRIRAERDERILVTTLTKKMSEDLTDYLLELGIRVRYLHSEVDTLR 519

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++ +LR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 520 RVELLTELRRGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSDKSLIQTIGRAAR 579

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+  AI+ET RRREKQ+ +N +  ++PQ +++K++++++ ++ E 
Sbjct: 580 NVSGQVHMYADKITPSMSKAIEETNRRREKQIAYNTERGLDPQPLRKKVVDILEDMVRES 639

Query: 741 AATTNISIDAQQLSLSKK-----KGKAH---------------------LKSLRKQMHLA 774
           A    I    +  S  K      K KA                      ++ L  QMH A
Sbjct: 640 AGEEMIGGGGRAQSRGKAPVPGMKSKAGDSVGRYAAELAGMPRHELAQLIRQLDDQMHEA 699

Query: 775 ADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           A  L FE AAR+RDE+  LK     +G+D
Sbjct: 700 AKELQFELAARLRDEVNELKKE--LRGMD 726


>gi|227500159|ref|ZP_03930228.1| excision endonuclease subunit B [Anaerococcus tetradius ATCC 35098]
 gi|227217681|gb|EEI82985.1| excision endonuclease subunit B [Anaerococcus tetradius ATCC 35098]
          Length = 656

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/662 (54%), Positives = 472/662 (71%), Gaps = 10/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q++Y P GDQP AI +L KGI   +  Q+L GVTGSGKTFTMA +I+ +QRP +V+A
Sbjct: 3   FNLQSNYKPRGDQPIAIDKLTKGIEDGKHHQILRGVTGSGKTFTMANIIQNVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL++EFK FFP NAVEYFVSYYDYYQPEAYV  TDTYI K+SSIN++ID+MRH
Sbjct: 63  HNKTLAYQLFTEFKEFFPDNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G    Y +++V L+    +  ++++  L+  QY R 
Sbjct: 123 SATMALFERRDVIIVASVSCIYGLGDPIEYQKLVVSLRPSQEISPEDVMRKLIDVQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFR  GD ++IFP+  +  A R+  FG++I+EISEF  LTG+    +    IY
Sbjct: 183 DVDFSRGTFRRRGDILDIFPAGFDQKAIRIEFFGDEIDEISEFDALTGKVTAKISHAYIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T       A+  I+EEL+ RL EL +E +LLEAQRLEQR  YD+EML   G C 
Sbjct: 243 PASHYATSSEKTEKAIVSIEEELEERLFELNRENKLLEAQRLEQRTKYDIEMLREIGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y PED +L VDESHV+IPQ+ GMY GD  RK  L +Y
Sbjct: 303 GIENYSRHLSQRPAGSRPYTLIDYFPEDFILMVDESHVSIPQVGGMYEGDRSRKQNLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L    I VSATPG +ELE+  G +V+QIIRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLKFFEFEDLIKQAIYVSATPGPYELEKTHGQMVDQIIRPTGLLDPLIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+ +E++   ++  R+L+T LTK+MAEDLT YL E  I+VRY+HS++KT+E
Sbjct: 423 VRPTKNQIDDLIEEVHKTIEKKERVLVTTLTKKMAEDLTTYLTENGIKVRYLHSDIKTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLG+FDVLVGINLLREGLDIPE  L+AILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RSEIIRELRLGEFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YADTITKS++ AIDET RRR+ Q + NK H I P ++K+ I E+I       
Sbjct: 543 NSEGRVIMYADTITKSMKKAIDETERRRKIQEDFNKVHGIVPTTIKKNIAEII------- 595

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
              T    + +    SK   +  L ++  +M+ AA+ L+FE AA +RD+IK +K +  F 
Sbjct: 596 -QITKKKEEEEIEEFSKDDIETILINMESEMYKAAEELDFERAAALRDQIKAMKDN--FT 652

Query: 801 GL 802
           G+
Sbjct: 653 GV 654


>gi|311740505|ref|ZP_07714332.1| excision endonuclease subunit UvrB [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304025|gb|EFQ80101.1| excision endonuclease subunit UvrB [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 697

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/661 (53%), Positives = 472/661 (71%), Gaps = 9/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y P+GDQPAAIA+L + ++  E+  +L+G TG+GK+ T A +IE  QRP +VMA
Sbjct: 28  FQVVSEYEPAGDQPAAIAELNERLNRDERDVVLMGATGTGKSATAAWLIEKQQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH
Sbjct: 88  PNKTLAAQLANELRQLLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VVSSVSCIYG+G+ +SY    V + + + +++   L  LV  QY+R 
Sbjct: 148 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVIISVDEELDRDRFLRLLVDIQYERN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+G  RGTFR  GD+++I P++ E+ A R+  FG+DI+ +   +P+TG  I  V+ ++I+
Sbjct: 208 DVGFTRGTFRAKGDTVDIIPAY-EERAVRIEFFGDDIDSLYYIHPVTGDVIEEVDEVRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  IKEEL  RL +LE  G+LLEAQRL  R  YDLEM+E  G C 
Sbjct: 267 PATHYVAGPERMEKAVAAIKEELAERLEDLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM+ GD  RK  L E+
Sbjct: 327 GIENYSRHVDGRPAGSAPATLLDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+      T+ +SATPG +EL    G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSAVDNRPLTFDEFEQRVGQTVYMSATPGDFELTSSDGEYVEQVIRPTGLVDPKVT 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ DE+     Q  R+L+T LTKRMAEDLT+YL E+ I+VRY+HS++ TL+
Sbjct: 447 VKPTKGQIDDLIDEVRTRISQQERVLVTTLTKRMAEDLTDYLLEQGIKVRYLHSDIDTLQ 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +NK+H I+PQ +++KI +++D +  ED
Sbjct: 567 NVSGEVIMYADKITDSMQEAIEETERRREKQIAYNKEHGIDPQPLRKKIADILDQV-YED 625

Query: 741 AATTNISIDAQQL-------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                 + D   +       S++  + +A +  L  QM  AA  L FE A R+RDEI  L
Sbjct: 626 GGEEEANSDPSAVVEKRDISSMATDEVQALIDDLSAQMGAAARELKFELAGRLRDEIADL 685

Query: 794 K 794
           K
Sbjct: 686 K 686


>gi|38233744|ref|NP_939511.1| excinuclease ABC subunit B [Corynebacterium diphtheriae NCTC 13129]
 gi|81829915|sp|Q6NHI3|UVRB_CORDI RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|38200005|emb|CAE49674.1| excinuclease ABC subunit B [Corynebacterium diphtheriae]
          Length = 681

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/660 (54%), Positives = 471/660 (71%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQPAAI +L   +   E+  +LLG TG+GK+ T A +IE  QRP +VMA
Sbjct: 11  FEVISEYEPAGDQPAAIEELDARLSRGERDVVLLGATGTGKSATAAWLIEQQQRPTLVMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 71  PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT SLL R D +VVSSVSCIYG+G+ +SY    V L++ + VE+   L  LV  QY R 
Sbjct: 131 RATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLRVDEEVERDRFLRLLVDIQYDRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+G  RGTFRV GD+++I P++ E+VA RV  FG+DI+ +   +PLTG  IR V+ ++I+
Sbjct: 191 DVGFTRGTFRVKGDTVDIIPAY-EEVAVRVEFFGDDIDALYYIHPLTGDVIRQVDEVRIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A++ IK EL+ RL +LE  G+LLEAQRL  R  YDLEM+E  G C 
Sbjct: 250 PATHYVAGPERMAKAVEDIKAELRDRLEDLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  G  P TL +Y PED L  +DESHVT+PQI GM+ GD  RK  L E+
Sbjct: 310 GIENYSRHLDGRPAGSAPATLLDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL++EE+      T+ +SATPG +EL    G  VEQ+IRPTGLVDP ++
Sbjct: 370 GFRLPSALDNRPLKWEEFEQRVGQTVYMSATPGDYELAASGGEYVEQVIRPTGLVDPEID 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+  EI     +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ TL+
Sbjct: 430 VRPTRGQIDDLIHEIKQRTTKDERVLVTTLTKKMAEDLTDYLLENGIRVRYLHSDIDTLQ 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTKSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD IT S+Q AIDET RRREKQ+ +NK+H I+PQ +++KI ++++ +    
Sbjct: 550 NVSGTVIMYADKITDSMQYAIDETERRREKQIAYNKEHGIDPQPLRKKIADILEQVQESK 609

Query: 741 AATTNISIDAQQLSLSKKKGK--AHLKS----LRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A +T  S DA  +S +       A L+S    L  QM  AA  L FE A R+RDEI  LK
Sbjct: 610 AESTAPSSDAVVVSKTNTSSMPVAELRSLIDDLTTQMGTAARELKFELAGRLRDEIAELK 669


>gi|260589087|ref|ZP_05855000.1| excinuclease ABC subunit B [Blautia hansenii DSM 20583]
 gi|260540507|gb|EEX21076.1| excinuclease ABC subunit B [Blautia hansenii DSM 20583]
          Length = 667

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/656 (54%), Positives = 472/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  Y P+GDQP AIA+L+KG     + Q LLGVTGSGKTFTMA VI+ +Q+P +V+A
Sbjct: 9   FKLKAPYKPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLQKPTLVIA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAYVP +DTYI K+SS+N++ID++R 
Sbjct: 69  HNKTLAAQLYGEFKEMFPDNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSVNDEIDKLRL 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+VSSVSCIYGIGS + Y  MI+ L+ G   ++ E++  L+  QY R 
Sbjct: 129 SATSSLSERKDVIIVSSVSCIYGIGSPDDYQNMIISLRPGMEKDRDEVIRELIDIQYDRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGTFRV GD +EIFP+   + A RV  FG++I+ I+E   LTG+    +  I I+
Sbjct: 189 EMDFHRGTFRVRGDVLEIFPADYSETAVRVEFFGDEIDRITEVDILTGEIKSALNHIAIF 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P   +  A   I+EELK R+   + E +LLEAQR+ +R  +D+EML+ TG C 
Sbjct: 249 PASHYVVPIEKIRKAAVAIEEELKERVDYFKGEDKLLEAQRISERTNFDIEMLKETGFCS 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L+G  PG+PP TL +Y  +D L+ +DESH TIPQI GMY GD  RK TL +Y
Sbjct: 309 GVENYSRHLSGLKPGQPPYTLIDYFGDDFLIIIDESHKTIPQIRGMYAGDQSRKQTLVDY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       + VSATPG +E E  + +  EQIIRPTGL+DP VE
Sbjct: 369 GFRLPSAKDNRPLNFEEFEDKIDQILFVSATPGEYE-ENHELLRAEQIIRPTGLLDPEVE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N   ++  +IL+T LTKRMAEDLTEY+ E  IRVRY+HS++ TLE
Sbjct: 428 VRPVEGQIDDLISEVNKEIKKKNKILITTLTKRMAEDLTEYMKELGIRVRYLHSDIDTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 488 RTQIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSEVSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S+++AIDET RRR  Q ++N++H I P+++K+ + ++I   + + 
Sbjct: 548 NADGRVIMYADVITDSMRIAIDETMRRRALQQKYNEEHGITPKTIKKAVRDLIS--ISKA 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A T   ++    S+S+K+ +  +K ++KQM  AA +LNFE AA +RD++  LK S
Sbjct: 606 VAETEEKLEKDPESMSRKELENLIKKVQKQMQAAAADLNFEMAASLRDKMLELKKS 661


>gi|159029997|emb|CAO90377.1| uvrB [Microcystis aeruginosa PCC 7806]
          Length = 667

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/667 (54%), Positives = 470/667 (70%), Gaps = 18/667 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T FQ+Q  + P+GDQPAAI +L+  + ++ + Q LLG TG+GKTFT+A VIE + RP +
Sbjct: 1   MTAFQLQAPFQPTGDQPAAIDKLVDSLQNQHRFQTLLGATGTGKTFTIAAVIEKIGRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK SSIN++ID 
Sbjct: 61  VLAHNKTLAAQLCNELRQFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKSSSINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  + L +G   +Q++LL +LV  QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGMPAEYLKAAISLTVGQEFDQRQLLRALVSVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RG FR+ GD +EI P++ ED   ++  FG++IE I    PLTG+ ++ +E I
Sbjct: 181 NRNDLELTRGRFRLKGDILEIVPAY-EDRVIKIDFFGDEIESIRYLDPLTGEVLQKLERI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP   L  A + IK EL  RL+ELEK G+LLEAQRL+QR  YDLEML+  G
Sbjct: 240 SIYPARHFVTPEERLEVACRDIKTELDNRLLELEKAGKLLEAQRLDQRTRYDLEMLQEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  GEPP  L +Y P++ LL VDESHV++PQI GMY GD  RK  L
Sbjct: 300 YCNGVENYSRHLAGRLAGEPPECLVDYFPQNWLLVVDESHVSVPQIRGMYNGDQSRKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+       I VSATPG WELEQ +  IVEQIIRPTG++DP
Sbjct: 360 IDHGFRLPSAADNRPLKSEEFWQKVNQCIFVSATPGDWELEQSENHIVEQIIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    QV+D+  EI    +   R+L+T LTKRMAEDLTEYL ER I+VRY+HSE++
Sbjct: 420 EIFVRPTEGQVDDLLGEIKERVRLNERVLITTLTKRMAEDLTEYLQERGIKVRYLHSEIQ 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           +++RIEII+DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR+  SLIQTIGR
Sbjct: 480 SIQRIEIIQDLREGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRATRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR++  + ILY D +T S+  AI+ET RRR  Q E+N+KH I PQ + ++    I    
Sbjct: 540 AARHIRGQAILYGDNLTDSMINAIEETKRRRAIQEEYNQKHGIIPQPIVKRSSNSI---- 595

Query: 738 LEDAATTNIS--IDAQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
               A  +IS  +++QQL         LS ++    ++ L  QM  AA NL FE AA+ R
Sbjct: 596 ---LAFLDISRRLNSQQLDQVCENIEELSLEQIPELIQQLEAQMKEAAKNLEFEAAAKYR 652

Query: 788 DEIKRLK 794
           D IK+L+
Sbjct: 653 DRIKQLR 659


>gi|32475348|ref|NP_868342.1| excinuclease ABC subunit B [Rhodopirellula baltica SH 1]
 gi|81835216|sp|Q7UFR2|UVRB_RHOBA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|32445889|emb|CAD78620.1| excinuclease ABC subunit B [Rhodopirellula baltica SH 1]
 gi|327537770|gb|EGF24475.1| UvrABC system protein B [Rhodopirellula baltica WH47]
          Length = 708

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/654 (53%), Positives = 470/654 (71%), Gaps = 4/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   + PSGDQPAAIA+L++GI S +  Q LLG TG+GKT+TMA VI ++QRPA++++
Sbjct: 11  FDLHQPFPPSGDQPAAIAKLIEGIQSGKTAQTLLGATGTGKTYTMANVIASVQRPALILS 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAV YFVSYYDYYQPEAY+P+ D YIEK+SSINE+IDR+R 
Sbjct: 71  HNKTLAAQLYGEFKEFFPNNAVHYFVSYYDYYQPEAYIPQRDVYIEKDSSINEEIDRLRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T SL+ R D ++V+SVS IYG+GS + Y Q++V L  G+   +  LL   V  QY+R 
Sbjct: 131 ATTSSLVSRRDVVIVASVSSIYGLGSPDDYRQLVVDLHQGEQTRRDHLLLKFVDLQYQRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GDSIE++PS+ E+ A+R+ M+G++IE+IS   P +G+ I+ VE + IY
Sbjct: 191 DIQFERGKFRVRGDSIELWPSY-EEFAYRIEMWGDEIEKISLIKPTSGETIKTVEHLYIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V P   +  A++ ++EEL  +L   + +G+LLEAQRL  R  +DLEML   G C 
Sbjct: 250 PCKHFVMPEDRIQRAIRLLREELTQQLEIFQSQGKLLEAQRLSARTKFDLEMLAEVGHCP 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+G+ PG  P TL+++ P+D + FVDESHVT+PQ+  MY GD  RK TL E+
Sbjct: 310 GIENYSRPLSGKEPGATPDTLYDFFPKDFITFVDESHVTVPQVRAMYAGDRSRKITLVEH 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP  +DNRPL+F+EW         VSATP  +ELE+  G +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPCALDNRPLKFDEWEERTGQICFVSATPSDYELERTGGEVVEQIIRPTGLLDPEVE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I SAR QV  + +++ + A++  R+L+T LTKR+AEDL  Y  E+ ++ R++HSE+   E
Sbjct: 430 IVSARGQVTHLLEQVRIRAERDERVLVTALTKRLAEDLATYFQEQGVKCRWLHSELNAFE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++++++LR G+FD LVG+NLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 490 RVDLLQELRAGQFDCLVGVNLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N NS+VILYAD +T S+Q+AIDET RRR  Q+E+N KH I P++V++ I + ID    E 
Sbjct: 550 NANSRVILYADKVTDSMQMAIDETERRRVIQMEYNAKHGIVPKTVRKSIRKGID---TEA 606

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A     +  AQ    +      ++  L ++M  AA++L FE AAR+RD + +LK
Sbjct: 607 ANHKESTRKAQDSGEAIYITIEYVDKLEQEMLAAAEDLEFERAARLRDRVLQLK 660


>gi|153956169|ref|YP_001396934.1| excinuclease ABC subunit B [Clostridium kluyveri DSM 555]
 gi|219856494|ref|YP_002473616.1| hypothetical protein CKR_3151 [Clostridium kluyveri NBRC 12016]
 gi|146349027|gb|EDK35563.1| UvrB [Clostridium kluyveri DSM 555]
 gi|219570218|dbj|BAH08202.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 664

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/649 (53%), Positives = 467/649 (71%), Gaps = 4/649 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI  +   I   +K Q LLGVTGSGKTFTMA +IE +Q+P +V+A
Sbjct: 4   FKVHSQFSPTGDQPQAIESISSRIFKGDKFQTLLGVTGSGKTFTMANIIEKVQKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAY+ +TDTYIEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFKEFFPENCVEYFVSYYDYYQPEAYIAQTDTYIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D IVV+SVSCIYG+G+ E Y ++ + L+ G    + E+L  LV+ QY+R 
Sbjct: 124 SATSALLERRDVIVVASVSCIYGLGNPEEYKKLTLSLRQGMIKNRDEVLKKLVEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  IRGTFRV GD+++IFP+   +   RV  FG++I++I EF  LTG  +   + + I+
Sbjct: 184 DLNFIRGTFRVKGDTVDIFPASSAERGIRVEFFGDEIDKIREFDVLTGSTLGIRKHVSIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T R  L  ++  I+ EL+  L +L  E +LLEAQRL+QR  +D+EM+   G C 
Sbjct: 244 PASHFATSREKLEISIGKIEAELEETLKKLIAEDKLLEAQRLKQRTNFDIEMMREIGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR+ G PP TL +Y P+D LLF+DESHVT+PQ+  MY GD  RK +L EY
Sbjct: 304 GIENYSRILDGRSKGSPPQTLIDYFPKDFLLFIDESHVTLPQVKAMYAGDRSRKESLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F+E+       + VSATP  +EL   +  I EQI+RPTGL+DP + 
Sbjct: 364 GFRLPSAFDNRPLKFQEFEKKLNQVVFVSATPAEYELNNSEN-IAEQILRPTGLLDPEIL 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+Y+ I     +G R+L+T LTK+MAEDLTEY  + +++ RY+HS + T++
Sbjct: 423 VKPIKGQIDDLYNNIQETIHRGYRVLVTTLTKKMAEDLTEYFKDMDVKTRYLHSSITTID 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLR G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RMKIIRDLRKGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSEKSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILLE 739
           N  SKVI+YADTIT S+  AI ET RRR+ Q+E+NKK+ I P+++ + I E+I+  ++LE
Sbjct: 543 NSESKVIMYADTITNSMDKAISETKRRRQIQIEYNKKNGIKPRTINKAIREIIESTMILE 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  T N   +A  +    KK +  +K   KQM  AA  L FEEAA++RD
Sbjct: 603 EEETYNTLEEA--VKADHKKVEELIKEYEKQMAAAAKELRFEEAAKLRD 649


>gi|19552585|ref|NP_600587.1| excinuclease ABC subunit B [Corynebacterium glutamicum ATCC 13032]
 gi|62390254|ref|YP_225656.1| excinuclease ABC subunit B [Corynebacterium glutamicum ATCC 13032]
 gi|41325591|emb|CAF21380.1| EXCINUCLEASE ABC SUBUNIT B [Corynebacterium glutamicum ATCC 13032]
          Length = 720

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/673 (53%), Positives = 479/673 (71%), Gaps = 11/673 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +++ P+GDQPAAI +L + +   E+  +L+G TG+GK+ T A +IE  QRPA+VMA
Sbjct: 49  FVVVSEFEPAGDQPAAIKELDERLDRGERDVVLMGATGTGKSATAAWLIEKQQRPALVMA 108

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH
Sbjct: 109 PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 168

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ +SY    V L +G+ +++   L  LV  QY+R 
Sbjct: 169 SATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLNVGEEIDRDRFLRLLVDIQYERN 228

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+G  RG FRV GD+++I P++ E++A R+  FG++I+ +   +PLTG  IR V  I+I+
Sbjct: 229 DVGFTRGAFRVKGDTVDIIPAY-EELAVRIEFFGDEIDALYYIHPLTGDTIRQVNEIRIF 287

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  IK EL++RL +LE  G+LLEAQRL  R  YDLEM+E  G C 
Sbjct: 288 PATHYVAGPERMEKAVADIKAELEVRLADLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 347

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM+ GD  RK  L E+
Sbjct: 348 GIENYSRHIDGRGEGTAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 407

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL +EE++  R  T+ +SATPG +E+    G  VEQ+IRPTGLVDP V 
Sbjct: 408 GFRLPSAMDNRPLTWEEFDERRGQTVFMSATPGKFEIAAADGEFVEQVIRPTGLVDPKVT 467

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI     +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ TL+
Sbjct: 468 VKPTKGQIDDLIHEIRQRTDKDERVLVTTLTKKMAEDLTDYLLENGIRVRYLHSDIDTLQ 527

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 528 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 587

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738
           NV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +NK+H I+PQ +++KI +++D +    
Sbjct: 588 NVSGEVIMYADKITDSMQYAIEETDRRREKQVAYNKEHGIDPQPLRKKIADILDQVYDNS 647

Query: 739 EDAATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            D A  + S DA  +      S+  K+ +  +  L  QM  AA  L FE A R+RDEI  
Sbjct: 648 ADGAGPSASGDAAVVAKPDVSSMPAKEVQKLIDDLSAQMAAAARELKFELAGRLRDEIFE 707

Query: 793 LKSSPYFQGLDDS 805
           LK     +G+ D+
Sbjct: 708 LKKE--LRGIKDA 718


>gi|227833193|ref|YP_002834900.1| excinuclease ABC, subunit B [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184179|ref|ZP_06043600.1| excinuclease ABC subunit B [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454209|gb|ACP32962.1| excinuclease ABC, subunit B [Corynebacterium aurimucosum ATCC
           700975]
          Length = 697

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/660 (53%), Positives = 475/660 (71%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++++ P+GDQPAAIA+L + +   E+  +L+G TG+GK+ T A +IE  QRP +VMA
Sbjct: 28  FRVESEFQPAGDQPAAIAELDERLSRGERDVVLMGATGTGKSATAAWLIEKQQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH
Sbjct: 88  PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VVSSVSCIYG+G+ +SY    V L+ G+ +++   L  LV  QY+R 
Sbjct: 148 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLEEGEEIDRDRFLRLLVDIQYERN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+G  RGTFRV GD+++I P++ E+ A R+  FG+D++E+   +PLTG  +  V+ ++I+
Sbjct: 208 DVGFTRGTFRVKGDTVDIIPAY-EERAVRIEFFGDDVDELYYIHPLTGDVLERVDEVRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A++ IKEEL  RL ELE  G+LLEAQRL  R  YDLEM+E  G C 
Sbjct: 267 PATHYVAGPERMARAIEDIKEELAERLAELENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM+ GD  RK  L E+
Sbjct: 327 GIENYSRHVDGRPAGSAPATLLDYFPEDFLTIIDESHVTVPQIGGMFEGDMARKRNLVEF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+      T+ +SATPG +E+    G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSAVDNRPLTFDEFEERVGQTVYMSATPGDFEMTASGGEFVEQVIRPTGLVDPKVT 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ DE+     +  R+L+T LTKRMAEDLT+YL E  I+VRY+HS++ TL+
Sbjct: 447 VKPTKGQIDDLIDEVRARTAKQERVLVTTLTKRMAEDLTDYLLEHGIKVRYLHSDIDTLQ 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           NV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +NK+H I+PQ +++KI +++D +    
Sbjct: 567 NVSGEVIMYADKITDSMQEAIEETERRREKQIAYNKEHGIDPQPLRKKIADILDQVYENA 626

Query: 738 ---LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               +DA  T I       S++  + +A +  L  QM  AA  L FE A R+RDEI  LK
Sbjct: 627 DEQGQDADPTAIVDKPDVSSMAADEVQALIDDLTTQMREAARELKFELAGRLRDEIADLK 686


>gi|261409601|ref|YP_003245842.1| excinuclease ABC subunit B [Paenibacillus sp. Y412MC10]
 gi|261286064|gb|ACX68035.1| excinuclease ABC, B subunit [Paenibacillus sp. Y412MC10]
          Length = 663

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/654 (54%), Positives = 471/654 (72%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+++ P GDQP AI  L++G+   +K Q LLG TG+GKTFT+A+ I  + RP +V+A
Sbjct: 11  FEIQSEFQPQGDQPTAIDALVEGLRQGKKHQTLLGATGTGKTFTIAQTIAKVNRPTLVIA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP+N+V+YFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID++RH
Sbjct: 71  HNKTLAAQLASEFKEFFPNNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSSINEEIDKLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+GS   Y +M++ L++G    + E+LS LV  QY+R 
Sbjct: 131 SATSSLFERRDVIIVASVSCIYGLGSPHEYGEMLLSLRVGMEKPRNEILSRLVDIQYQRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +RGTFRV GD +EIFP+   + A RV +FG++IE I+E   LTG+ +   E I I+
Sbjct: 191 DINFVRGTFRVRGDVVEIFPASKGEHAVRVELFGDEIERITEIDVLTGELVGEREHIAIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT   T+  A+  I+ EL+ RL  L  EG+LLEAQRLEQR  YD+EM++  G C 
Sbjct: 251 PASHFVTREETMRVALVNIERELEERLELLRSEGKLLEAQRLEQRTRYDIEMMKEVGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  LT R PG  P TL +Y P+D L  +DESHVT+PQI  MY GD  RK  L ++
Sbjct: 311 GIENYSGPLTFREPGATPYTLLDYFPDDMLFVIDESHVTLPQIRAMYNGDRARKTVLVDH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       I VSATPG +E+E C   +VEQIIRPTGL+DP ++
Sbjct: 371 GFRLPSALDNRPLKFEEFEEKVNQIIYVSATPGPYEMEHCD-TMVEQIIRPTGLLDPIID 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+    +  R+L+T LTK+MAEDLT+YL E  I+VRYMHS++KTLE
Sbjct: 430 VRPTEGQIDDLIGEIHDRVDRDERVLVTTLTKKMAEDLTDYLKEIGIKVRYMHSDIKTLE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLG F VLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RMQILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+Y D IT S+  AI ET RRR  Q+ +N++H I PQ++++K+ +VI+   + +
Sbjct: 550 NSEGKVIMYGDKITDSMDRAIKETERRRSIQVAYNEEHGITPQTIRKKVRDVIEATKVAE 609

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                +  + Q+  +SKK+ +  ++ L  +M  AA NL FE AA +RD +  L+
Sbjct: 610 GKADYLVGEGQK--MSKKERQKLIQRLEAEMKEAAKNLQFERAAELRDALLELQ 661


>gi|317121057|ref|YP_004101060.1| excinuclease ABC subunit B [Thermaerobacter marianensis DSM 12885]
 gi|315591037|gb|ADU50333.1| Excinuclease ABC subunit B [Thermaerobacter marianensis DSM 12885]
          Length = 693

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/656 (55%), Positives = 478/656 (72%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P GDQP AIA++ +      +V  LLG TG+GKT TMA VIE +Q P +V+A
Sbjct: 4   FKVVSEFEPRGDQPKAIAEITRAFREGARVVTLLGATGTGKTATMAWVIEQLQLPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL +EFK FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 64  HNKTLAGQLAAEFKQFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDALINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D IVV+SVSCIYG+G+ E Y  +++ L++G+ + ++++L  LV  QY R 
Sbjct: 124 SATSSLFERKDVIVVASVSCIYGLGAPEDYRDLVLSLRVGNEMPREQILRKLVDIQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD IEIFP+ + + A RV +FG++I+ ++E   LTG+ +   + + IY
Sbjct: 184 DVDFQRGTFRVRGDVIEIFPASMAERAIRVELFGDEIDRLTEIDALTGEVLAYRDHVAIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    L  A++ I+ EL+ RL EL  + +LLEAQRLEQR  YDLEML   G C 
Sbjct: 244 PASHYVTHEWKLKRAIESIERELEERLAELRAQDKLLEAQRLEQRTRYDLEMLREVGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGEPP TL +Y P   L  +DESHVTIPQ+  MY G+  RK +L +Y
Sbjct: 304 GIENYSRHLTGRAPGEPPYTLLDYFPRPFLCIIDESHVTIPQLRAMYEGEMSRKDSLIDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F+E+       + VSATPG +E E    +IVEQI+RPTGL+DP +E
Sbjct: 364 GFRLPSARDNRPLKFDEFWEKVGQVLFVSATPGPFERE-VSDVIVEQIVRPTGLLDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q+ED+  EI    ++G R+L+T LTKRMAEDLT+YL E  I+VRY+HSE+ TLE
Sbjct: 423 VRPTRGQIEDLLGEIRQRVERGHRVLVTTLTKRMAEDLTDYLREMGIKVRYLHSEIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS T+LIQTIGRAAR
Sbjct: 483 RMEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSATALIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  KVI+YADTIT S++ AI+ET RRR+ Q ++N++H I PQ+V++ + +VI+     +
Sbjct: 543 NVEGKVIMYADTITDSMRQAIEETYRRRKIQEDYNRRHGITPQTVRKAVRDVIEATHAAE 602

Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++   ++LS L + +    +K LRK+M  AA +L FE AA +RD I  L++
Sbjct: 603 RPPEYLA--GKRLSELPRHQIPDLVKRLRKEMEQAARDLEFERAALLRDMILELEA 656


>gi|256750636|ref|ZP_05491522.1| excinuclease ABC, B subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750476|gb|EEU63494.1| excinuclease ABC, B subunit [Thermoanaerobacter ethanolicus CCSD1]
          Length = 623

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/625 (56%), Positives = 459/625 (73%), Gaps = 15/625 (2%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGSGKTFTMA +I+ + RP +V+A NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPE
Sbjct: 1   MTGSGKTFTMANIIQKLNRPTLVIAHNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPE 60

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AY+P+TDTYIEK++SINE+ID++RHSAT +L ER D I+V+SVSCIYG+G    Y  +++
Sbjct: 61  AYIPQTDTYIEKDASINEEIDKLRHSATAALFERRDVIIVASVSCIYGLGDPVDYENLML 120

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L+ G   ++ E++  LV  QY+R D+   RG FRV GD IEIFP+   + A RV +FG+
Sbjct: 121 SLRPGMIKDRDEIIKKLVDIQYERNDVNFTRGKFRVRGDVIEIFPASFSNKAIRVELFGD 180

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I+E   LTG+ +   + + I+  SHY T +  L  A+K I+EEL+ R  EL+  G+
Sbjct: 181 EIDRIAEIDVLTGEVLGLRKHVAIFPASHYATSKDKLERAIKSIREELEQRYKELKDAGK 240

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           ++EA+RL QR  YDLEML+  G CQ IENYSR+++GR PG PP TL +Y P+D L+F+DE
Sbjct: 241 IVEAERLRQRTNYDLEMLQEMGYCQGIENYSRHISGRPPGSPPYTLLDYFPKDFLIFIDE 300

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVTIPQI GMY GD  RK  L EYGFRLPS  DNRPL FEE+       I VSATPG +
Sbjct: 301 SHVTIPQIRGMYNGDRSRKEALVEYGFRLPSAFDNRPLTFEEFEKRINQVIFVSATPGPY 360

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           ELE  +  +VEQ+IRPTGL+DP V ++  + QV+D+  EI     +G R+L+T LTK+MA
Sbjct: 361 ELEHSEQ-VVEQLIRPTGLIDPEVIVKPVKGQVDDLIGEIRKTVDKGFRVLVTTLTKKMA 419

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL +  I+V+Y+HS+++T+ER+EIIRDLRLGKFDVL+GINLLREGLDIPE  LVA
Sbjct: 420 EDLTDYLKDMGIKVKYLHSDIETIERVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVA 479

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS+TSLIQTIGRAARN   +VI+YADT+T S++ AIDET RRR+ Q+E+N
Sbjct: 480 ILDADKEGFLRSETSLIQTIGRAARNAEGRVIMYADTVTNSMKRAIDETNRRRKIQMEYN 539

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG------KAHLKSLRK 769
           KKH I P++V + + +VI+         T+++ + Q+    K K       K+ ++ L K
Sbjct: 540 KKHGITPKTVIKGVRDVIE--------ATHVAEEEQKYRRKKVKTYDPEIIKSTIEQLEK 591

Query: 770 QMHLAADNLNFEEAARIRDEIKRLK 794
           +M  AA  L FE+AA++RD I  LK
Sbjct: 592 EMKEAAIELQFEKAAKLRDVIFELK 616


>gi|327441317|dbj|BAK17682.1| helicase subunit of the DNA excision repair complex [Solibacillus
           silvestris StLB046]
          Length = 660

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 472/655 (72%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y P+GDQP AI QL++G+   ++ Q LLG TG+GKTFT++ VI+ + +P +VMA
Sbjct: 5   FTIKSAYQPAGDQPEAIKQLIQGVKEGKRHQTLLGATGTGKTFTISNVIKEVNKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP NAVEYFVSYYDY+QPEAYVP+TDTYIEK+SSINE+ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPDNAVEYFVSYYDYFQPEAYVPQTDTYIEKDSSINEEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+G+ E Y +M+V ++ G  +E+ +LL  LV  QY+R 
Sbjct: 125 SATTALFERKDVIIIASVSCIYGLGNPEEYREMVVSIRTGMEIERNQLLRKLVDIQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   R+  FG++++ I E   LTG+ + + + + I+
Sbjct: 185 DINFTRGTFRVRGDVVEIFPASRDEHCIRIEFFGDEVDRIREVDALTGEILGDRQHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL  L  E RLLEAQRLEQR  YDLEM++  G C 
Sbjct: 245 PASHFVTREEKMKIAIENIEKELEERLTTLRSEDRLLEAQRLEQRTNYDLEMMKEMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED LL VDESHVT+PQ+ GMY GD  RK  L E+
Sbjct: 305 GIENYSRHLTLREAGATPYTLLDYFPEDFLLVVDESHVTLPQVRGMYNGDQARKGVLVEH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELE     +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLMFDEFQSKVSQAIYVSATPGPYELEHTPE-MVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+ DEI+   ++  R L+T LTK+M+EDL+ YL E  ++V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLIDEIHERIRRNERTLVTTLTKKMSEDLSSYLKEMGLKVEYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIR+LR G +DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRELRKGTYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YA+ +T S+  AI ET RRRE Q+ +N++H I P+++ +KI ++I      +
Sbjct: 544 NSNGHVIMYANNMTDSMTKAISETKRRRETQMAYNEEHGITPKTIIKKIPDIIRATQAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T I+       L+KK+ +  + +L+ +M  AA  L+FE AA +RD I  LK+
Sbjct: 604 QEETYITKVTGGKKLTKKELEKLVATLQVEMKEAAKALDFERAAELRDMIFELKA 658


>gi|304386222|ref|ZP_07368555.1| excision endonuclease subunit UvrB [Pediococcus acidilactici DSM
           20284]
 gi|304327579|gb|EFL94806.1| excision endonuclease subunit UvrB [Pediococcus acidilactici DSM
           20284]
          Length = 673

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/656 (53%), Positives = 463/656 (70%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL+ GI   EK Q+LLG TG+GKTFT++ VI+ + +P ++++
Sbjct: 16  FELVSKYQPTGDQPTAIKQLVDGIQKGEKEQILLGATGTGKTFTISNVIQQVNKPTLILS 75

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID +RH
Sbjct: 76  HNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDELRH 135

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y    + L++G  +++ +LL  LV  QY+R 
Sbjct: 136 SATSSLLERNDVIVVASVSSIFGLGDPREYRDQALSLRVGQEIDRNQLLRELVDIQYERN 195

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  E  + RV  FG++I+ + E   LTG+ I + + I I+
Sbjct: 196 DIDFQRGRFRVHGDVVEIFPAANEAHSIRVEFFGDEIDRMREMDALTGEIIGDRDHITIF 255

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A++ I+ ELK RL ELE +G+LLEAQRL+QR TYD+EML   G   
Sbjct: 256 PATHFMTNEDRMEHAIEGIEAELKDRLAELEGQGKLLEAQRLKQRTTYDIEMLREMGYTN 315

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGEPP TL ++ P+D LL VDESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 316 GIENYSRHMDGRKPGEPPYTLLDFFPDDFLLVVDESHVTMPQVRGMYNGDRARKQQLIDY 375

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + +SATPG +E  +    +V+QIIRPTGL+DP +E
Sbjct: 376 GFRLPSALDNRPLKLEEFEKHVHQVVYMSATPGDYETARTDH-VVQQIIRPTGLLDPTIE 434

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+YL +  I+V Y+HS+VKTLE
Sbjct: 435 VRPIMGQMDDLLGEINQRVEKDERVFVTTLTKKMAEDLTDYLKDMGIKVAYLHSDVKTLE 494

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  IIRDLRLGK+DVLVGINLLREG+D+PE  LVAILDADKEGFLR+  S+IQ  GRAAR
Sbjct: 495 RTRIIRDLRLGKYDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNTRSMIQVAGRAAR 554

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-LE 739
           N +  VI+YAD +T+S++  IDET RRR  Q  +NK+H I P ++K+ I  +I      E
Sbjct: 555 NEHGHVIMYADHVTQSMKETIDETARRRSIQEAYNKEHGITPHTIKKDIRSLISATTETE 614

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           D    +  +D     + +K  K  ++SL  QM  AA  L+FE AA +RD +  LK+
Sbjct: 615 DTGEKDDFLDVDFADMDRKDQKEMIESLEDQMRAAAKELDFERAANLRDTVLELKA 670


>gi|156743469|ref|YP_001433598.1| excinuclease ABC subunit B [Roseiflexus castenholzii DSM 13941]
 gi|156234797|gb|ABU59580.1| excinuclease ABC, B subunit [Roseiflexus castenholzii DSM 13941]
          Length = 670

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/658 (52%), Positives = 470/658 (71%), Gaps = 4/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P+GDQP AIAQL++GI +  K Q LLG TG+GKT TMA V   ++RPA+VMA
Sbjct: 3   FRIEAPFQPAGDQPKAIAQLVEGIRAGYKHQTLLGATGTGKTLTMAHVFSQLERPALVMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L +QLY+EF+   P  AVE F+SYYD Y PEAYVP  D YIEKE+ INE+IDR+RH
Sbjct: 63  HNKTLVSQLYAEFRELLPDAAVEMFISYYDMYTPEAYVPSKDLYIEKEAEINEEIDRLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++L  R D ++V+SVS IYG+GS   Y Q+++ +++G+   + +LL  L+  Q++R 
Sbjct: 123 AATQALFTRRDVLIVASVSAIYGLGSPHEYGQVVIPIRVGEVRNRDKLLRQLLDLQFERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+++IFP++ +++A RV  +G+D+E I+EF PLTG+ +     + IY
Sbjct: 183 DMDFHRGTFRVRGDTLDIFPAN-QEIALRVEFWGDDVERITEFDPLTGEVLIERTAVNIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T   TL  A+  I+ EL +RL ELE++G+LLEA RL+QR  YDLEML   G C 
Sbjct: 242 PAKHFITTAETLKLAITDIQAELAVRLAELEQQGKLLEAARLKQRTNYDLEMLSEVGYCS 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG+ P TL +Y P+D +LF+DESH+T+PQI GMY GD  RK TL +Y
Sbjct: 302 GIENYSRHLDRRAPGQTPWTLLDYFPDDFILFIDESHITLPQIRGMYAGDRSRKETLVDY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+       I VSATPG +E E  Q I VEQIIRPTGL+DP VE
Sbjct: 362 GFRLPSALDNRPLRFDEFERHIHQVIYVSATPGPYEYEHSQQI-VEQIIRPTGLLDPTVE 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+  EI    Q+G R L+T LTKRMAEDL +YL E  IR  Y+HS+++TLE
Sbjct: 421 VRPTRGQIDDLVGEIKRRVQKGQRALVTTLTKRMAEDLADYLKEMGIRTSYLHSDIETLE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS +SLIQ IGRAAR
Sbjct: 481 RVEILRDLRLGVYDVVVGINLLREGLDLPEVSLVAILDADKEGYLRSGSSLIQIIGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738
           ++   VI+YADTIT S++ AIDET RRR  Q  +N++HNI P  + + + ++ D +  + 
Sbjct: 541 HIEGAVIMYADTITPSMKFAIDETNRRRAIQEAYNREHNITPVGISKAVRDLTDRVRKVA 600

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           E+      ++  ++L + K +    +K L KQM  AA  L FE+AA +RD+I  L+ +
Sbjct: 601 EERGVYQAAVPGEELPIPKDEIVKLIKELEKQMKQAAKELAFEKAAALRDQIIELRRT 658


>gi|239624093|ref|ZP_04667124.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522124|gb|EEQ61990.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 660

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/656 (53%), Positives = 469/656 (71%), Gaps = 6/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI  L+KG     + + LLGVTGSGKTFTMA VI+ +Q+P +++A
Sbjct: 3   FKLHSEYQPTGDQPQAIEALVKGFKEGNQFETLLGVTGSGKTFTMANVIQQLQKPTLIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID++RH
Sbjct: 63  HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E++  L+  QY R 
Sbjct: 123 SATAALSEREDVIIVASVSCIYGLGSPIDYKEMVISLRPGMIRDRDEIIHKLIDIQYDRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +E+FP++ +  A+R+  FG++++ I+E   LTG+    +  I I+
Sbjct: 183 DMDFKRGTFRVRGDVLEVFPAYSDSAAYRIEFFGDEVDRITEIDTLTGEIKAQLGHIAIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +  A + I  ELK ++   + E +LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 243 PASHYVVPKEKMMEATENILAELKEQVAFFKSEDKLLEAQRISERTNFDVEMMRETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PGEPP TL +Y PED L+ VDESH+T+PQ+ GMY GD  RK+TL +Y
Sbjct: 303 GIENYSRHLTGGLPGEPPCTLIDYFPEDFLIIVDESHITLPQVRGMYAGDRSRKSTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATP  +E E  + + VEQIIRPTGL+DP V 
Sbjct: 363 GFRLPSALDNRPLNFSEFEDKINQMMFVSATPSVYEREH-ELMRVEQIIRPTGLLDPEVT 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N       +IL+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ TLE
Sbjct: 422 VRPVEGQIDDLISEVNKEVANHHKILITTLTKRMAEDLTDYMREVGIRVKYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RAQIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S+++AI ET RRR+ Q  +N++H I P ++K+ + ++I   + + 
Sbjct: 542 NSEGHVIMYADNMTDSMRVAIGETNRRRQIQQAYNEEHGITPTTIKKAVRDLI--AISKA 599

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD---EIKRL 793
            A  +        S+ +K+    +K L K+M  AA  LNFEEAAR+RD   EIK++
Sbjct: 600 VADNDEKFKKDPESMDEKELNKLVKELEKKMRQAAVELNFEEAARLRDRMIEIKKI 655


>gi|256848093|ref|ZP_05553537.1| excinuclease ABC, B subunit [Lactobacillus coleohominis 101-4-CHN]
 gi|256715153|gb|EEU30130.1| excinuclease ABC, B subunit [Lactobacillus coleohominis 101-4-CHN]
          Length = 679

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/659 (52%), Positives = 470/659 (71%), Gaps = 4/659 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + +DY P+GDQP AIAQL KGI   +K Q+LLG TG+GKTFT++ VI  + +P +++
Sbjct: 9   MFDLVSDYQPTGDQPEAIAQLTKGIKDGDKAQILLGATGTGKTFTISNVIANVNKPTLIL 68

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++R
Sbjct: 69  SHNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDQLR 128

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT SLLERND IVV+SVS I+G+GS   Y   ++ L++G  + +  LL  LV  Q+ R
Sbjct: 129 HSATSSLLERNDVIVVASVSSIFGLGSPAEYQNHVISLRVGQEISRDRLLRELVNIQFDR 188

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RG FRV GD +EIFP+  E+ A RV  FG++I+ I E   LTG+ + + E + I
Sbjct: 189 NDIDFQRGRFRVRGDVVEIFPASREEKALRVEFFGDEIDRIREVDALTGEVLGDREHVSI 248

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  +H++T   T+  A+  I+ ++K ++ +  KEG+LLEA+R++QR TYD+EM+   G  
Sbjct: 249 FPATHFLTTEETMKVALPEIEADMKKQVEQFTKEGKLLEAERIQQRTTYDIEMMREMGYT 308

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY+  R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +
Sbjct: 309 NGIENYSRYMDRRKPGEPPFTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKKQLID 368

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+ +E+       I +SATPG +E  Q    +V+QIIRPTGL+DP +
Sbjct: 369 YGFRLPSALDNRPLKLDEFEQHVNQVIYMSATPGPYEQAQTDH-VVQQIIRPTGLLDPTI 427

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EIN   ++  R+L+T LTK+M+EDL++YL +  ++V+Y+HS++KTL
Sbjct: 428 EVRPVMGQIDDLVGEINKRIEKHERVLITTLTKKMSEDLSDYLKDLGLKVKYLHSDIKTL 487

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +IIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAA
Sbjct: 488 ERTQIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNERSLIQTIGRAA 547

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN +  VI+YADTIT S++ AIDET RRR  Q ++N++H I P+++ + I E I  +   
Sbjct: 548 RNEHGAVIMYADTITDSMKAAIDETKRRRTIQEKYNQEHGITPKTIIKPIQEAISAVKPA 607

Query: 740 DAATTNISID--AQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +      S +  AQ  + LS K+ +  L  L +QM  AA  L+FE+AA +RD +  L +
Sbjct: 608 EDQDDQQSAEFTAQDFAKLSAKEQQQMLDELTEQMRSAAKRLDFEQAATLRDTVMELSA 666


>gi|133930529|gb|ABO43835.1| excinuclease ABC, B subunit [Lactobacillus reuteri]
          Length = 671

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/659 (52%), Positives = 468/659 (71%), Gaps = 5/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL KGI   EK Q+LLG TG+GKTFT++ VI  + +P  +++
Sbjct: 10  FELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTWILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y   ++ L++G  +E+  LL+ LV  Q+ R 
Sbjct: 130 SATTSLLERNDVIVVASVSSIFGLGDPREYQNSVLSLRVGQEIERDRLLTELVNIQFDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A R+  FG++I+ I E   LTG+ I + + + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDERALRIEFFGDEIDRIREVDALTGEVIGDRDHVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +   EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNEEVMDRALPQIEADMKKQVKKFTDEGKLLEAERIQQRTTYDIEMMREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+ GR PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRYMDGRKPGEPPYTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + +SATPG +E+EQ    + +QIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLKLPEFEQHVNQVVYMSATPGPYEMEQTDH-VAQQIIRPTGLLDPTVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+M+EDLT+YL +  +RV+Y+HS++KTLE
Sbjct: 429 VRPVMGQIDDLVGEINKRIEKNERVFVTTLTKKMSEDLTDYLKDMGLRVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738
           N N  VI+YADT+T S+Q A+DET RRR  Q+++N++H+I P ++ + I E I       
Sbjct: 549 NENGAVIMYADTVTDSMQKAMDETKRRRTIQMKYNEEHHITPHTIIKPIQEAITVTKKAT 608

Query: 739 EDAATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           ++A   N +   D     L K+     L  L +QM  AA  L+FE+AA +RD I  LK+
Sbjct: 609 DEAEADNSAEFTDKDFAKLDKEAQAKMLDELTEQMRSAAKRLDFEQAATLRDTIMELKT 667


>gi|229020376|ref|ZP_04177132.1| UvrABC system protein B [Bacillus cereus AH1273]
 gi|229026605|ref|ZP_04182948.1| UvrABC system protein B [Bacillus cereus AH1272]
 gi|228734690|gb|EEL85341.1| UvrABC system protein B [Bacillus cereus AH1272]
 gi|228740911|gb|EEL91153.1| UvrABC system protein B [Bacillus cereus AH1273]
          Length = 658

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 480/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISEYSPQGDQPGAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+N+VEYFVSYYDYYQPEAYVP TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNSVEYFVSYYDYYQPEAYVPHTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSSLFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKLKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ  G+I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQAPGVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKIEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|296451821|ref|ZP_06893540.1| excision endonuclease subunit UvrB [Clostridium difficile NAP08]
 gi|296879783|ref|ZP_06903757.1| excision endonuclease subunit UvrB [Clostridium difficile NAP07]
 gi|296259300|gb|EFH06176.1| excision endonuclease subunit UvrB [Clostridium difficile NAP08]
 gi|296429254|gb|EFH15127.1| excision endonuclease subunit UvrB [Clostridium difficile NAP07]
          Length = 668

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/659 (52%), Positives = 482/659 (73%), Gaps = 7/659 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D   F++++D+ P+GDQP AI  ++  I+  EK   LLGVTGSGKTFTMA +I+ +++P 
Sbjct: 11  DTMDFKIKSDFKPTGDQPEAIKSIVDSINRNEKFSTLLGVTGSGKTFTMANIIQQVKKPT 70

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           ++MA NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV  +DTYIEK++SIN++ID
Sbjct: 71  LIMAHNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEID 130

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++RHSAT S+LER D I++SSVSCIYG+G  + Y ++++ ++ G   ++ +++  L++ Q
Sbjct: 131 KLRHSATASILERRDTIIISSVSCIYGLGDPKDYKELMLSIRPGMQRDRDDVIKRLIEIQ 190

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R DI   RGTFRV GD +EIFP+  ++ A R+  FG++++ I+E   +TG+ +     
Sbjct: 191 YERNDINFTRGTFRVRGDILEIFPASNDEKAIRIEFFGDEVDRITEIDYVTGKIVGTRNH 250

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           + I+  SHYVT    +  A+  I++EL+ ++   ++  RLLEAQR+EQR  YD+EML+  
Sbjct: 251 VVIFPASHYVTTPERIEKAIIEIEDELQEQIKFFKENDRLLEAQRIEQRTKYDIEMLKEI 310

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G CQ IENYSR++TGR+ GE P TL ++ P+D L+ VDE+HVTIPQ+ GMY GD  RK +
Sbjct: 311 GFCQGIENYSRHITGRSEGERPYTLMDFFPDDYLIIVDEAHVTIPQVRGMYAGDRSRKTS 370

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L E GFRLPS +DNRPL F+E+       + VSATPG +E++  +  I EQIIRPTGL+D
Sbjct: 371 LIENGFRLPSALDNRPLNFQEFEGNINQMLFVSATPGPYEIQHSE-TIAEQIIRPTGLLD 429

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P VE+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT YL E  I+V+Y+HS++
Sbjct: 430 PIVEVRPINNQIDDLVGEITKTIEKNERVLITTLTKKMSEDLTNYLKEIGIKVKYLHSDI 489

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER EIIRDLRLGKFDVLVGINLLREGLDIPE  L+AILDADKEGFLRS+T+LIQTIG
Sbjct: 490 VTLERTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETALIQTIG 549

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N +VI+YAD IT S+Q AIDET RRR+ Q  +N++HNI P+++++ I + I+  
Sbjct: 550 RAARNENGRVIMYADRITDSMQNAIDETKRRRDIQNLYNEEHNITPKTIQKNIRDSIEAT 609

Query: 737 -LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            + E+     IS D       K + +A++  L+ +M  AA NL FE AA +RD++K+L+
Sbjct: 610 KVAEEEVVYGIS-DTD----DKDEIRANIDKLKSEMMEAAQNLQFERAAELRDKVKQLE 663


>gi|184154829|ref|YP_001843169.1| excinuclease ABC subunit B [Lactobacillus fermentum IFO 3956]
 gi|183226173|dbj|BAG26689.1| excinuclease ABC subunit B [Lactobacillus fermentum IFO 3956]
          Length = 671

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/658 (52%), Positives = 469/658 (71%), Gaps = 4/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P+GDQP AIA L KG+   +  Q+LLG TG+GKTFT++ VI+ + RP ++++
Sbjct: 10  FQLVSDYQPTGDQPEAIAALTKGVEEGDHAQILLGATGTGKTFTISNVIKNVNRPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEMKKFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ERND IVV+SVS I+G+GS   Y   +V L++G  + +  LL  LV+ Q+ R 
Sbjct: 130 SATSSLIERNDVIVVASVSSIFGLGSPAEYQNHVVSLRVGQEIPRNRLLRELVEIQFDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  E+ A RV  FG++I+ I E   LTG+ I + E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASREEKAIRVEFFGDEIDRIREVDALTGEVIGDREHVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +  KEG+LLEAQRL+QR TYD+EM+   G   
Sbjct: 250 PATHFLTSEDIMDLALPEIEADMKSQVAKFTKEGKLLEAQRLQQRTTYDIEMMREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+  R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRYMDRRKPGEPPFTLLDFFPKDFLLIVDESHQTMPQVRGMYNGDRARKQQLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL  +E+       I +SATPG +E  Q    +V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLTLKEFEGHVHQVIYMSATPGPYEEAQTDR-VVQQIIRPTGLLDPTIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+L+T LTK+M+EDL++YL +  ++V+Y+HS++KTLE
Sbjct: 429 VRPVMGQIDDLVGEINKRIEKNERVLVTTLTKKMSEDLSDYLKDLGLKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738
           N N  VI+YADT+T S++ AIDET RRR  Q  +NK+H I P+++ + I E I  +  + 
Sbjct: 549 NANGSVIMYADTVTDSMRAAIDETKRRRTIQEAYNKEHGITPKTIVKPIQEAITAVKPVE 608

Query: 739 EDAATTNISIDAQQLSLSKKKGKAH-LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           ++ A       ++  +   K+ +A  +  L +QM  AA  L+FE+AA +RD +  L S
Sbjct: 609 DEQADKGAEFTSKDFAALDKEAQAQIIAELTEQMKAAAKRLDFEQAATLRDTVMELTS 666


>gi|227514395|ref|ZP_03944444.1| excision endonuclease subunit UvrB [Lactobacillus fermentum ATCC
           14931]
 gi|227087261|gb|EEI22573.1| excision endonuclease subunit UvrB [Lactobacillus fermentum ATCC
           14931]
          Length = 671

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/658 (52%), Positives = 469/658 (71%), Gaps = 4/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P+GDQP AIA L KG+   +  Q+LLG TG+GKTFT++ VI+ + RP ++++
Sbjct: 10  FQLVSDYQPTGDQPEAIAALTKGVEEGDHAQILLGATGTGKTFTISNVIKNVNRPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEMKKFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ERND IVV+SVS I+G+GS   Y   +V L++G  + +  LL  LV+ Q+ R 
Sbjct: 130 SATSSLIERNDVIVVASVSSIFGLGSPAEYQNHVVSLRVGQEIPRNRLLRELVEIQFDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  E+ A RV  FG++I+ I E   LTG+ I + E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASREEKAIRVEFFGDEIDRIREVDALTGEVIGDREHVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +  KEG+LLEAQRL+QR TYD+EM+   G   
Sbjct: 250 PATHFLTSEDIMDLALPEIEADMKSQVAKFTKEGKLLEAQRLQQRTTYDIEMMREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+  R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRYMDRRKPGEPPFTLLDFFPKDFLLIVDESHQTMPQVRGMYNGDRARKQQLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL  +E+       I +SATPG +E  Q    +V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLTLKEFEGHVHQVIYMSATPGPYEEAQTDR-VVQQIIRPTGLLDPTIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+L+T LTK+M+EDL++YL +  ++V+Y+HS++KTLE
Sbjct: 429 VRPVMGQIDDLVGEINKRIEKNERVLVTTLTKKMSEDLSDYLKDLGLKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738
           N N  VI+YADT+T S++ AIDET RRR  Q  +NK+H I P+++ + I E I  +  + 
Sbjct: 549 NANGSVIMYADTVTDSMRAAIDETKRRRTIQEAYNKEHGITPKTIVKPIQEAIKAVKPVE 608

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           ++ A       ++  +   K+ +A +   L +QM  AA  L+FE+AA +RD +  L S
Sbjct: 609 DEQADKGAEFTSKDFAALDKEAQAQMIAELTEQMKAAAKRLDFEQAATLRDTVMELTS 666


>gi|148543619|ref|YP_001270989.1| excinuclease ABC subunit B [Lactobacillus reuteri DSM 20016]
 gi|227363418|ref|ZP_03847542.1| excision endonuclease subunit UvrB [Lactobacillus reuteri MM2-3]
 gi|325681973|ref|ZP_08161491.1| excision endonuclease subunit UvrB [Lactobacillus reuteri MM4-1A]
 gi|148530653|gb|ABQ82652.1| Excinuclease ABC subunit B [Lactobacillus reuteri DSM 20016]
 gi|227071518|gb|EEI09817.1| excision endonuclease subunit UvrB [Lactobacillus reuteri MM2-3]
 gi|324978617|gb|EGC15566.1| excision endonuclease subunit UvrB [Lactobacillus reuteri MM4-1A]
          Length = 690

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/662 (52%), Positives = 469/662 (70%), Gaps = 11/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL KGI   EK Q+LLG TG+GKTFT++ VI  + +P ++++
Sbjct: 29  FELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTLILS 88

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 89  HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 148

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y   ++ L++G  +E+  LL+ LV  Q+ R 
Sbjct: 149 SATTSLLERNDVIVVASVSSIFGLGDPREYQNSVLSLRVGQEIERDRLLTELVNIQFDRN 208

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E   LTG+ I + + + I+
Sbjct: 209 DIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDEIDRIREVDALTGEVIGDRDHVSIF 268

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +   EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 269 PATHFMTNEEVMDRALPQIEADMKKQVKKFTDEGKLLEAERIQQRTTYDIEMMREMGYTN 328

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+ GR PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 329 GIENYSRYMDGRKPGEPPYTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 388

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + +SATPG +E+EQ    + +QIIRPTGL+DP VE
Sbjct: 389 GFRLPSALDNRPLKLPEFEQHVNQVVYMSATPGPYEMEQTDH-VAQQIIRPTGLLDPTVE 447

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+M+EDLT+YL +  ++V+Y+HS++KTLE
Sbjct: 448 VRPVMGQIDDLVGEINKRIEKNERVFVTTLTKKMSEDLTDYLKDMGLKVKYLHSDIKTLE 507

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 508 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 567

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733
           N N  VI+YADT+T S+Q A+DET RRR  Q+++N++H+I P ++ + I E I       
Sbjct: 568 NENGAVIMYADTVTDSMQKAMDETKRRRTIQMKYNEEHHITPHTIIKPIQEAITVTKKAT 627

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           D    +++A      D     L K+     L  L +QM  AA  L+FE+AA +RD I  L
Sbjct: 628 DETEADNSAEFT---DKDFAKLDKEAQAKMLDELTEQMRSAAKRLDFEQAATLRDTIMEL 684

Query: 794 KS 795
           K+
Sbjct: 685 KT 686


>gi|184153027|ref|YP_001841368.1| excinuclease ABC subunit B [Lactobacillus reuteri JCM 1112]
 gi|183224371|dbj|BAG24888.1| excinuclease ABC subunit B [Lactobacillus reuteri JCM 1112]
          Length = 671

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/662 (52%), Positives = 469/662 (70%), Gaps = 11/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL KGI   EK Q+LLG TG+GKTFT++ VI  + +P ++++
Sbjct: 10  FELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y   ++ L++G  +E+  LL+ LV  Q+ R 
Sbjct: 130 SATTSLLERNDVIVVASVSSIFGLGDPREYQNSVLSLRVGQEIERDRLLTELVNIQFDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E   LTG+ I + + + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDEIDRIREVDALTGEVIGDRDHVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +   EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNEEVMDRALPQIEADMKKQVKKFTDEGKLLEAERIQQRTTYDIEMMREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+ GR PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRYMDGRKPGEPPYTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + +SATPG +E+EQ    + +QIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLKLPEFEQHVNQVVYMSATPGPYEMEQTDH-VAQQIIRPTGLLDPTVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+M+EDLT+YL +  ++V+Y+HS++KTLE
Sbjct: 429 VRPVMGQIDDLVGEINKRIEKNERVFVTTLTKKMSEDLTDYLKDMGLKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733
           N N  VI+YADT+T S+Q A+DET RRR  Q+++N++H+I P ++ + I E I       
Sbjct: 549 NENGAVIMYADTVTDSMQKAMDETKRRRTIQMKYNEEHHITPHTIIKPIQEAITVTKKAT 608

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           D    +++A      D     L K+     L  L +QM  AA  L+FE+AA +RD I  L
Sbjct: 609 DETEADNSAEFT---DKDFAKLDKEAQAKMLDELTEQMRSAAKRLDFEQAATLRDTIMEL 665

Query: 794 KS 795
           K+
Sbjct: 666 KT 667


>gi|253681688|ref|ZP_04862485.1| excinuclease ABC subunit B [Clostridium botulinum D str. 1873]
 gi|253561400|gb|EES90852.1| excinuclease ABC subunit B [Clostridium botulinum D str. 1873]
          Length = 656

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/654 (54%), Positives = 472/654 (72%), Gaps = 4/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  + KGI   EK Q LLGVTGSGKTFTMA +IE +Q+P +V+A
Sbjct: 4   FKIHSVYKPTGDQPKAIKSISKGILKGEKFQTLLGVTGSGKTFTMANIIEQVQKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLTSEFREFFPKNCVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D IVV+SVSCIYG+G+ E Y ++ V L+ G   ++ E++  LV  QY+R 
Sbjct: 124 SATSALLERKDVIVVASVSCIYGLGNPEEYKKLTVSLREGMQKDRDEIMRQLVDIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I  +RGTFR  GD ++IFP+   +V  RV  FG++I++I EF  LTG  +   +   I+
Sbjct: 184 EINFVRGTFRAKGDVLDIFPAAATNVGIRVEFFGDEIDKIREFDVLTGNILNTRKHALIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T +  L  A+K I+EEL+ R+ EL  E +LLEAQR++QR  +D+EM+   G C 
Sbjct: 244 PASHFATSKEKLEIAIKKIEEELEERVRELTAEDKLLEAQRVKQRTNFDIEMMREVGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR  G PP TL +Y PED LLF+DESHVT+PQI  MY GD  RK  L +Y
Sbjct: 304 GIENYSRILDGRRAGTPPKTLIDYFPEDFLLFIDESHVTLPQIKAMYGGDKSRKDNLVQY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+FEE+      TI VSATP  +E +     I EQIIRPTGL+DP + 
Sbjct: 364 GFRLPCAYDNRPLKFEEFEGKLNQTIFVSATPSQYEFQHSTN-IAEQIIRPTGLLDPEII 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+Y  IN    +G R+L+T LTK+M+EDLTEYL +  ++  Y+HS + T++
Sbjct: 423 VKPIKGQIDDLYANINETISKGFRVLVTTLTKKMSEDLTEYLKDMGVKTEYLHSSIDTIK 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR GKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMEIIRDLRKGKFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+YADTITK++  AI ET RRR+ Q+++N+++ I P+++ + I +VI   + ED
Sbjct: 543 NSESKVIMYADTITKAMDKAISETNRRRKIQMQYNEEYGIVPRTILKDIRDVIQTKVSED 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                ++    + ++SK++ +  +    K+M  AA  L FE+AA IRD+I++LK
Sbjct: 603 KEEYIVN---NKDTMSKEQIEKLINKYEKEMKKAAKELQFEKAAEIRDKIQKLK 653


>gi|270290697|ref|ZP_06196921.1| excinuclease ABC, B subunit [Pediococcus acidilactici 7_4]
 gi|270280757|gb|EFA26591.1| excinuclease ABC, B subunit [Pediococcus acidilactici 7_4]
          Length = 667

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/656 (52%), Positives = 464/656 (70%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL+ GI   EK Q+LLG TG+GKTFT++ VI+ + +P ++++
Sbjct: 10  FELVSKYQPTGDQPTAIKQLVDGIQKGEKEQILLGATGTGKTFTISNVIQQVNKPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID +RH
Sbjct: 70  HNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDELRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y    + L++G  +++ +LL  LV  QY+R 
Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPREYRDQALSLRVGQEIDRNQLLRELVDIQYERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  E  + RV  FG++I+ + E   LTG+ I + + I I+
Sbjct: 190 DIDFQRGRFRVHGDVVEIFPAANEAHSIRVEFFGDEIDRMREMDALTGEIIGDRDHITIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A++ I+ ELK RL+ELE +G+LLEAQRL+QR TYD+EML   G   
Sbjct: 250 PATHFMTNEDRMEHAIEGIEAELKDRLVELEGQGKLLEAQRLKQRTTYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGEPP TL ++ P+D LL VDESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRKPGEPPYTLLDFFPDDFLLVVDESHVTMPQVRGMYNGDRARKQQLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + +SATPG +E  +    +V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVHQVVYMSATPGDYETARTDH-VVQQIIRPTGLLDPTIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+YL +  I+V Y+HS+VKTLE
Sbjct: 429 VRPIMGQMDDLLGEINQRVEKDERVFVTTLTKKMAEDLTDYLKDMGIKVAYLHSDVKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  IIR+LRLGK+DVLVGINLLREG+D+PE  LVAILDADKEGFLR+  S+IQ  GRAAR
Sbjct: 489 RTRIIRNLRLGKYDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNTRSMIQVAGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-LE 739
           N +  VI+YAD +T+S++  IDET RRR  Q  +NK+H I P ++K+ I  +I      E
Sbjct: 549 NEHGHVIMYADHVTQSMKETIDETARRRSIQEAYNKEHGITPHTIKKDIRSLISATTETE 608

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           D    +  +D     + +K  K  ++SL  QM  AA  L+FE AA +RD +  LK+
Sbjct: 609 DTGEKDDFLDVDFADMDRKDQKEMIESLEDQMRAAAKELDFERAANLRDTVLELKA 664


>gi|229816345|ref|ZP_04446652.1| hypothetical protein COLINT_03395 [Collinsella intestinalis DSM
           13280]
 gi|229808101|gb|EEP43896.1| hypothetical protein COLINT_03395 [Collinsella intestinalis DSM
           13280]
          Length = 749

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/686 (52%), Positives = 474/686 (69%), Gaps = 33/686 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AIA L++G+   ++ Q+LLGVTGSGKTFTMAK IEA+ +P +VMA
Sbjct: 29  FEVVSPFEPSGDQPQAIASLVQGVRDGDRYQVLLGVTGSGKTFTMAKTIEALGKPTLVMA 88

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL SE K FFP+NAV YFVSYYDYYQPEAYVP +DTYIEK+SSINE+++ +RH
Sbjct: 89  PNKTLAAQLASELKEFFPNNAVVYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEVEMLRH 148

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT SLL R D IVV+SVSCIYGIGS E Y+ +   +   + +E+ E + SL+  QY R 
Sbjct: 149 QATASLLSRRDVIVVASVSCIYGIGSPEDYAGLAPNVDKKEPLERDEFIHSLIDIQYDRN 208

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGTFRV GD ++++P + E    R   FG+++E I+E   +TG+ +R  + I ++
Sbjct: 209 DYDLARGTFRVRGDVVDVYPPYAEH-PLRFEFFGDEVELIAEIDEVTGEIMREFDAIPVW 267

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +P +  A+K I+EEL+ R+ EL+   +LLEAQRLEQR +YDLEMLET G   
Sbjct: 268 PASHYVTEKPKVTAALKSIEEELEARVAELKANDKLLEAQRLEQRTSYDLEMLETMGFTT 327

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR PGEPP TL +Y P+D L  +DESHVT+PQI GM+ GD  RK TL E+
Sbjct: 328 GIENYSRHLDGRKPGEPPFTLIDYFPKDMLCIIDESHVTVPQIRGMHEGDRSRKVTLVEH 387

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR++E+    P  I VSATPG +EL   Q   VEQIIRPTGL+DP ++
Sbjct: 388 GFRLPSALDNRPLRYDEFEARIPQFIYVSATPGDYELRVSQN-NVEQIIRPTGLLDPKID 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+ DEI     +  R+L+T LTKRMAEDLT++L +  IRV YMHS+  T++
Sbjct: 447 VRPVRGQIDDLIDEIRERVARHERVLVTTLTKRMAEDLTDHLLDAGIRVNYMHSDTATMD 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+R LR GK DVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 507 RVEILRSLRQGKIDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNRRSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           N   +V++YAD+IT S++ AIDET RRR  Q  +N++H I PQ+V+  I ++   I    
Sbjct: 567 NAEGEVVMYADSITDSMREAIDETNRRRAIQTAYNEEHGIKPQTVRRSINDISSFIAEAE 626

Query: 738 --------------------------LEDAATTNIS--IDAQQLSLSKKKGKAHLKSLRK 769
                                      ED A   +   I      L  ++    ++++  
Sbjct: 627 ENVGKKDRSRGDTLGHGAFFSPAGTEGEDDACEGVGERIARDFADLPTEELVRVIETMED 686

Query: 770 QMHLAADNLNFEEAARIRDEIKRLKS 795
            M  A++ ++FEEAAR+RD + +LK+
Sbjct: 687 DMRAASEAMDFEEAARLRDIVVQLKA 712


>gi|312139895|ref|YP_004007231.1| excinuclease ABC subunit b uvrb [Rhodococcus equi 103S]
 gi|311889234|emb|CBH48548.1| excinuclease ABC subunit B UvrB [Rhodococcus equi 103S]
          Length = 764

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/690 (51%), Positives = 481/690 (69%), Gaps = 31/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y P+GDQP AI +L + +   EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 74  FQVVSEYEPAGDQPQAIDELERRLREGEKDVVLLGATGTGKSATTAWLIERVQRPTLVMA 133

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 134 PNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 193

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ +SY    +QL++G  V++  LL  LV  QY R 
Sbjct: 194 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSIQLEVGVEVDRDALLRLLVDVQYNRN 253

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG+++E +   +PLTG  +R V+T++I+
Sbjct: 254 DMAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEVEALYYLHPLTGDVVRQVDTVRIF 312

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A++ I+ EL+ RL +LE  G+LLEAQRL  R  YDLEM++  G C 
Sbjct: 313 PATHYVAGPERMERAVQDIEAELEERLADLENRGKLLEAQRLRMRTQYDLEMIKQVGFCS 372

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED LL +DESHVT+PQI  MY GD  RK  L E+
Sbjct: 373 GIENYSRHIDGRPAGSAPATLIDYFPEDFLLVIDESHVTVPQIGAMYEGDMSRKRNLVEF 432

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG++EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 433 GFRLPSATDNRPLTWEEFAGRIGQTVYLSATPGAYELGQAGGEFVEQVIRPTGLVDPEVV 492

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   +++  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ TL 
Sbjct: 493 VKPTKGQIDDLVHEIRERSERDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSDIDTLR 552

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 553 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 612

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+Q AI+ET RRREKQ+ +N +  ++PQ +++KI +++D +  E+
Sbjct: 613 NVSGQVHMYADKITDSMQRAIEETERRREKQIAYNLEKGVDPQPLRKKIADILDQV-YEE 671

Query: 741 AATTNISIDAQQLSLSKKK---GKAH------------------------LKSLRKQMHL 773
           A  T + +     + S+ +   G+A                         +K L  QM  
Sbjct: 672 AEDTEVGVGGSGRNASRGRRAQGEAGRAVSAGIYEGRDVKSMPRAELADLVKELTDQMMN 731

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE A R+RDEI  LK     +G+D
Sbjct: 732 AARDLQFELAGRLRDEIADLKKE--LRGMD 759


>gi|291542540|emb|CBL15650.1| Excinuclease ABC subunit B [Ruminococcus bromii L2-63]
          Length = 652

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/655 (53%), Positives = 461/655 (70%), Gaps = 7/655 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP  I +L+  I++  + Q LLGVTGSGKTFTMA VI+ +QRP +V+A
Sbjct: 3   FKLHSKYQPTGDQPQTIEKLVNSINAGNREQTLLGVTGSGKTFTMANVIQKVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAYV +TDTYIEK+SSIN++ID++RH
Sbjct: 63  HNKTLAAQLCSEFKEFFPDNAVEYFVSYYDYYQPEAYVAQTDTYIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +G    Y  M++ L+ G    + EL+  LV+ QY+R 
Sbjct: 123 SATLALSERRDVIIVASVSCIYSLGDPIDYRNMVISLRPGMEKSRDELVKKLVELQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R  FRV GD +EIFP+   D   RV  FG++I+ ISE  PLTG+    ++   IY
Sbjct: 183 DVSFTRNKFRVRGDVVEIFPAASNDSIIRVEFFGDEIDRISEINPLTGELKAVLKHAAIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+     +  A+  I  EL+ RL    + G+LLEAQRLEQR  YD+EML+  G C 
Sbjct: 243 PASHYIVSGDKMKKALAEIDRELEERLAYFRENGKLLEAQRLEQRTRYDMEMLQEIGFCT 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR ++GR PG  P TL  Y P+D LLFVDESHVT+PQ+ GM+ GD+ RK +L +Y
Sbjct: 303 GIENYSRIMSGRAPGSSPYTLLSYFPDDFLLFVDESHVTLPQVRGMFAGDYARKKSLIDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       + VSATPG +ELE+   ++ EQIIRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLNFDEFYSKINQAVYVSATPGDFELEKS-AVVAEQIIRPTGLLDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN+   +  R L+T LTK+MAEDLT YL +  IRVRYMH ++ T+E
Sbjct: 422 VRPTEGQLDDLVSEINIRTAKNQRTLVTTLTKKMAEDLTAYLEKLGIRVRYMHHDIDTVE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG+FDVLVGINLLREGLDIPE  LVA+LDADKEGFLRS  SLIQ  GRAAR
Sbjct: 482 RMEIVRDLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSTRSLIQIAGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD++T S+++AI ET RRRE Q ++N +H I P+++ +K+ ++++    +D
Sbjct: 542 NSEGTVIMYADSVTPSMKVAITETQRRREIQNKYNVEHGIVPKTIVKKVSDILEISTHDD 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +   N         LSK + +  ++ L K+M  AA  L FE AA +RD+IK+L+ 
Sbjct: 602 SEFKNTK------KLSKAQKQQLIEKLTKEMKAAAKLLEFEHAAYLRDKIKKLRG 650


>gi|149177973|ref|ZP_01856570.1| excinuclease ABC subunit B [Planctomyces maris DSM 8797]
 gi|148843166|gb|EDL57532.1| excinuclease ABC subunit B [Planctomyces maris DSM 8797]
          Length = 681

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/666 (52%), Positives = 470/666 (70%), Gaps = 20/666 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+++++ PSGDQPAAIA L+ GI + +  Q+LLGVTGSGKTFTMA VI  + RPA+
Sbjct: 1   MSVFQLKSEFQPSGDQPAAIAGLVNGIKAGKSDQVLLGVTGSGKTFTMANVIAELGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLYSEFK FFP NAV YFVSYYDYYQPEAY+P+ D YIEK++SIN++IDR
Sbjct: 61  VLSHNKTLAAQLYSEFKEFFPENAVSYFVSYYDYYQPEAYIPQRDIYIEKDASINDEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R  AT +L+ R D IVV+SVSCIYG+GS + Y +M++ L++G+ +++ E+L  L+  QY
Sbjct: 121 LRLLATSALVSRRDVIVVASVSCIYGLGSPKDYLEMMIPLRVGEEIDRDEMLRKLIDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++ + R  FRV GD +E +P++ E+ A+R+  +G++IE ++   PLTG+ +R V+  
Sbjct: 181 DRNNVELARAKFRVRGDVVECWPAY-EEFAFRIEFWGDEIENLAIIDPLTGEVLRTVKEA 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+V P+  + +A++ I+ EL  R+  L+ EG+LLE+QRL  R  YD+E+LE  G
Sbjct: 240 YIYPAKHFVLPQERIESAIQEIQTELDERIQVLQSEGKLLESQRLSARTRYDMELLEEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L GR PG PP TL ++ PED LLFVDESHVT  Q+  MY GD  RK  L
Sbjct: 300 FCPGIENYSRALAGRKPGSPPDTLLDFFPEDYLLFVDESHVTCSQVRAMYAGDRSRKTNL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLP  +DNRPL F+EWN  R  T+ VSATPG WELE+ +G +VEQ+IRPTGL+DP
Sbjct: 360 VDHGFRLPMALDNRPLTFDEWNARRKQTVFVSATPGDWELERVEGEVVEQVIRPTGLIDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + I  AR QV  + +EI        R+L+T LTKR+AEDL  Y  E  IR  +MHSE+ 
Sbjct: 420 VIRIEPARGQVPHLKEEILKRVAVNERVLVTTLTKRLAEDLASYFQEEGIRCAWMHSELD 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER+EI+R LR  K+DV++GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 AFERVEILRGLREQKYDVVIGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           +AR+VN++VILYAD +T S+Q A+DET RRR  Q E+N++H I P+S+K+ I   I+   
Sbjct: 540 SARHVNAEVILYADRVTPSMQNAMDETERRRAIQKEYNREHGITPESIKKAIKRGIEE-- 597

Query: 738 LEDAATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                     I+A+Q           S+   +  L  L ++M  AA+ L FE AA +RD 
Sbjct: 598 ---------EIEARQFVRESVGFKDESEYITQEFLGELEQEMLAAAEKLEFERAALLRDR 648

Query: 790 IKRLKS 795
           I  LK+
Sbjct: 649 IDDLKN 654


>gi|260663142|ref|ZP_05864034.1| excinuclease ABC, B subunit [Lactobacillus fermentum 28-3-CHN]
 gi|260552334|gb|EEX25385.1| excinuclease ABC, B subunit [Lactobacillus fermentum 28-3-CHN]
          Length = 671

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/658 (52%), Positives = 469/658 (71%), Gaps = 4/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P+GDQP AIA L KG+   +  Q+LLG TG+GKTFT++ VI+ + RP ++++
Sbjct: 10  FQLVSDYQPTGDQPEAIAALTKGVEEGDHAQILLGATGTGKTFTISNVIKNVNRPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEMKKFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ERND IVV+SVS I+G+GS   Y   +V L++G  + +  LL  LV+ Q+ R 
Sbjct: 130 SATSSLIERNDVIVVASVSSIFGLGSPAEYQNHVVSLRVGQEIPRNRLLRELVEIQFDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  E+ A RV  FG++I+ I E   LTG+ I + E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASREEKAIRVEFFGDEIDRIREVDALTGEVIGDREHVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +  KEG+LLEAQRL+QR TYD+EM+   G   
Sbjct: 250 PATHFLTSEDIMDLALPEIEADMKSQVAKFTKEGKLLEAQRLQQRTTYDIEMMREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+  R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRYMDRRKPGEPPFTLLDFFPKDFLLIVDESHQTMPQVRGMYNGDRARKQQLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL  +E+       I +SATPG +E  Q    +V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLTLKEFEGHVHQVIYMSATPGPYEEAQTDR-VVQQIIRPTGLLDPTIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+L+T LTK+M+EDL++YL +  ++V+Y+HS++KTLE
Sbjct: 429 VRPVMGQIDDLVGEINKRIEKNERVLVTTLTKKMSEDLSDYLKDLGLKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738
           N N  VI+YADT+T S++ AIDET RRR  Q  +NK+H I P+++ + I E I  +  + 
Sbjct: 549 NANGSVIMYADTVTDSMRAAIDETKRRRTIQEAYNKEHGITPKTIIKPIQEAIKAVKPVE 608

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           ++ A       ++  +   K+ +A +   L +QM  AA  L+FE+AA +RD +  L S
Sbjct: 609 DEQADKGAEFTSKDFAALDKEAQAQMIAELTEQMKAAAKRLDFEQAATLRDTVMELTS 666


>gi|15678470|ref|NP_275585.1| excinuclease ABC subunit B [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|3122998|sp|O26542|UVRB_METTH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|2621508|gb|AAB84948.1| excinuclease ABC subunit B [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 646

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/656 (54%), Positives = 467/656 (71%), Gaps = 13/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AI  L+ GI +  + Q LLGVTGSGKTFT+A VI  +Q+P +V++
Sbjct: 4   FKLVSDYRPLGDQPKAIRSLVNGIKAGMREQTLLGVTGSGKTFTVANVIAEVQKPTLVIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+ FFP NAVEYFVSYYD+YQPEAY+P+TDTYI+KE+SIN++IDRMRH
Sbjct: 64  HNKTLAAQLYEEFREFFPENAVEYFVSYYDFYQPEAYIPQTDTYIDKEASINDEIDRMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLL R+D IVVSSVSCIYGIG+   Y +  + L++G    ++E+L  L+  QY+R 
Sbjct: 124 SATQSLLSRDDVIVVSSVSCIYGIGAPTDYGEFTLHLEVGSGPGREEVLEGLINMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD++EI P H      R+  FG++I+ IS  + +TG++I+ ++ + I+
Sbjct: 184 DVEFDRGQFRVRGDTVEINPIH-GTPPIRIEFFGDEIDSISTVHRVTGRRIQKLDRVTIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V P   L  A++ I+ EL+ RL EL  + +LLEAQRLEQR  +D+EML   G CQ
Sbjct: 243 PAKHFVIPEDRLQRAIESIEAELEERLTELRSQNKLLEAQRLEQRTRFDMEMLREMGYCQ 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L+GR  GE P TL +Y PED L  +DESHVT+PQI GMY GD  RK TL EY
Sbjct: 303 GIENYSMHLSGRKWGEKPNTLLDYFPEDFLTVIDESHVTVPQIRGMYNGDRARKDTLVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPLRF+E+       I VSATPG +EL + Q  IVEQIIRPTGLVDP V 
Sbjct: 363 GFRLPSARENRPLRFDEFQESVNQVIYVSATPGRYELSRSQN-IVEQIIRPTGLVDPEVR 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + QV+D+  EI    ++G R+L+T LTKRMAEDLT+Y     ++VRY+HSE+ TLE
Sbjct: 422 IRPVKGQVDDLLSEIRRRVERGERVLVTTLTKRMAEDLTDYYSRVGVKVRYLHSEIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR G+FD LVG+NLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RVEIIDDLRRGEFDCLVGVNLLREGLDLPEVALVAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +V++YA   T S+  A++ T RRR+ Q+E+N++H I P+S +  + E       E+
Sbjct: 542 NVNGEVLIYAGRFTDSVMAAVETTNRRRKLQMEYNRRHGIKPRSTRRTLRE-------EE 594

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
               N+ +D     +   + +  +K L  +M  AA NL FE AARIRD I  LKS+
Sbjct: 595 GPLRNLKVD----EIPDHELELIIKDLEAEMRDAARNLEFERAARIRDRIMSLKSN 646


>gi|227548123|ref|ZP_03978172.1| excision endonuclease subunit B [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079785|gb|EEI17748.1| excision endonuclease subunit B [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 697

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/660 (52%), Positives = 469/660 (71%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y PSGDQP AI +L + ++  EK  +LLG TG+GK+ T A +IE  QRP +VMA
Sbjct: 28  FEVISEYQPSGDQPGAIKELNERLNRGEKDVVLLGATGTGKSATAAWLIEKQQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 88  PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT  LL R D +VV+SVSCIYG+G+ +SY    + L++G+ VE+   L  LV  QY+R 
Sbjct: 148 SATSVLLSRRDVVVVASVSCIYGLGTPQSYLDRSIVLRVGEEVERDRFLRLLVDVQYERN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD+++I P++ E+VA RV  FG++++E+   +PLTG+ +   E ++I+
Sbjct: 208 DIDFKRGTFRVKGDTVDIIPAY-EEVAVRVEFFGDEVDELYYIHPLTGEVLSREEEVRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A++ IK EL  RL +LE  G+LLEAQRL  R  YDLEM++  G C 
Sbjct: 267 PATHYVATDDRMEKAIEAIKLELADRLEDLENRGKLLEAQRLRMRTEYDLEMIQQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM+ GD  RK  L E+
Sbjct: 327 GIENYSRHMDGRPAGSAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       + +SATPG +ELE   G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSAVDNRPLKFDEFEARMGQVVYMSATPGDYELEATGGEFVEQVIRPTGLVDPQVH 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+ +EI     +  R+L+T LTKRMAEDLT+YL +  I+VRY+HS++ TL+
Sbjct: 447 VRPTKGQIDDLIEEIRQRVSRDERVLVTTLTKRMAEDLTDYLLDNGIKVRYLHSDIDTLQ 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTKSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           NV+  VI+YAD +T S++ AI+ET RRREKQL +N +H I+PQ +++KI +++D +    
Sbjct: 567 NVSGAVIMYADKVTDSMRDAIEETERRREKQLAYNVEHGIDPQPLRKKIADILDQVYDNA 626

Query: 738 -LEDAATTNISI--DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             E+ A    ++       S+S K  +  +  L  QM  AA  L FE A R+RDEI  L+
Sbjct: 627 DGEETAGGEAAVVEKPDVASMSSKDVQKLIDDLTAQMGAAARELKFELAGRLRDEIAELR 686


>gi|294784643|ref|ZP_06749932.1| excinuclease ABC subunit B [Fusobacterium sp. 3_1_27]
 gi|294487859|gb|EFG35218.1| excinuclease ABC subunit B [Fusobacterium sp. 3_1_27]
          Length = 663

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/659 (52%), Positives = 482/659 (73%), Gaps = 16/659 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +DY P+GDQPAAI  ++K I +  K Q+LLGVTGSGKTFT+A VIE +QRPA++
Sbjct: 4   NLFKIHSDYKPTGDQPAAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPALI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID++
Sbjct: 64  IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     + +KEL+  L+  +Y 
Sbjct: 124 RNAATTALIHRRDVIIVASVSSIYGLGSPDTYRRMTIPIDKQTGISRKELMKKLIALRYD 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377
           R DI   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQK++ N+E I
Sbjct: 184 RNDIAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLERI 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + Y+T     +  +K IK++LK+ + + E + +LLEAQRL+QR  YDLEM+   G
Sbjct: 243 VIYPATQYLTADDDKDRIIKEIKDDLKVEVKKFEDDKKLLEAQRLKQRTEYDLEMITEIG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSRYL+G+NPGE P TLFEY P+D +LF+DESH+T+PQ+ GMY GD  RK +L
Sbjct: 303 YCKGIENYSRYLSGKNPGETPDTLFEYFPKDFILFIDESHITVPQVRGMYNGDRARKESL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E GFRL + +DNRPLRFEE+      T+ +SATPG +E+E     I EQ+IRPTG+VDP
Sbjct: 363 VENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNHIAEQLIRPTGIVDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR  + QV+D+ DEI   A +  R+L+T LTK++AE+LTEY  E  ++V+YMHS++ 
Sbjct: 423 EIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTIGR
Sbjct: 483 TLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  ++I+P+S+ ++I        
Sbjct: 543 AARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYNHIDPKSIVKEIA------- 595

Query: 738 LEDAATTNISIDAQQLSLSKK--KGKAHLK----SLRKQMHLAADNLNFEEAARIRDEI 790
            ED    +  I+ ++   +KK  + KA ++     L K++    + L+FE+A  +RDE+
Sbjct: 596 -EDLINLDYGIEEKKFENNKKVFRNKADIEKEITKLEKKIKKLVEELDFEQAIVLRDEM 653


>gi|253583761|ref|ZP_04860959.1| excision endonuclease subunit UvrB [Fusobacterium varium ATCC
           27725]
 gi|251834333|gb|EES62896.1| excision endonuclease subunit UvrB [Fusobacterium varium ATCC
           27725]
          Length = 660

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/657 (53%), Positives = 482/657 (73%), Gaps = 5/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ + Y P+GDQP AI ++   I++  K Q+LLGVTGSGKTFT+A +IE  QRPA+++
Sbjct: 1   MFKIHSKYSPTGDQPEAIKKITDNINNGVKDQVLLGVTGSGKTFTVANIIEKTQRPALIL 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLYSE+K+FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SSIN++I+++R
Sbjct: 61  APNKTLAAQLYSEYKSFFPDNAVEYFVSYYDYYQPEAYIVTTDTYIEKDSSINDEIEKLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT +L+ R D I+V+SVS IYG+GS E+Y +M + +     +++KEL+  L+  +Y+R
Sbjct: 121 HAATAALMNRRDVIIVASVSAIYGLGSAETYRKMTIPIDRQTGIDRKELIERLISIRYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIK 378
            DI   RG FR+ GD I+I+PS++E   +R+  +G+D+EEISE   LTGQKIR N+E I 
Sbjct: 181 NDIAFERGKFRIKGDVIDIYPSYME-TGYRLEYWGDDLEEISEINTLTGQKIRKNLERIV 239

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  + Y+T        +  I+++LK+ +   EK G+LLEAQRL+QR  YD+EM+   G 
Sbjct: 240 LYPATQYLTADGDNERILAEIQKDLKIEVEAFEKRGKLLEAQRLKQRTEYDMEMIREIGY 299

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSRYL+G+  GE P TL EY P+D L+F+DESH++IPQI GMY GD  RK  L 
Sbjct: 300 CKGIENYSRYLSGKKEGETPDTLLEYFPKDFLIFIDESHISIPQIRGMYNGDRARKTALV 359

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E GFRL + +DNRPL+FEE+  +   ++ VSATPG +E+E   G I EQ+IRPTG++DP 
Sbjct: 360 ENGFRLKAALDNRPLKFEEFRKIADQSVFVSATPGDFEIEVSHGHIAEQLIRPTGILDPV 419

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+RS + QV+D+ +EI + A +  R+L+T LTK+MAE+LTEY     +RV+YMHS++ T
Sbjct: 420 IEVRSTKNQVDDLLEEIRIRADRKERVLVTTLTKKMAEELTEYYLGFGVRVKYMHSDIDT 479

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LERI+II+ LR G+FD LVGINLLREGLDIPE  LVAIL+ADKEGFLRS+ SL+QTIGRA
Sbjct: 480 LERIDIIKGLRKGEFDALVGINLLREGLDIPEVSLVAILEADKEGFLRSRRSLVQTIGRA 539

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  +VILY D +T S++ AIDET RRR+ Q E+N  +NI+P+++ ++I E  D I L
Sbjct: 540 ARNIEGRVILYGDIMTDSMKQAIDETNRRRKIQNEYNVYNNIDPKTIVKEISE--DLINL 597

Query: 739 EDAATTNISID-AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +     N + D A++   S+K  +  +  L+KQ+   +  L+FE A   RDE+ +LK
Sbjct: 598 DYGLDINETEDKAKKTFTSRKDIEKEIIKLQKQIAKLSKELDFENAIIKRDEMTKLK 654


>gi|331701687|ref|YP_004398646.1| UvrABC system protein B [Lactobacillus buchneri NRRL B-30929]
 gi|329129030|gb|AEB73583.1| UvrABC system protein B [Lactobacillus buchneri NRRL B-30929]
          Length = 668

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/656 (52%), Positives = 466/656 (71%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AI +L+ GI+  +K Q+L G TG+GKTFT++ VI  + +P +V++
Sbjct: 10  FDLVSKYKPTGDQPDAIKKLVAGINEGKKAQILKGATGTGKTFTISNVIAQVNKPTLVLS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y   +V L++G ++E+   L  LV  QY R 
Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPSEYRNHVVSLRVGQTIERDHFLRQLVDIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ I + + I I+
Sbjct: 190 DIDFQRGRFRVHGDVVEVFPASWDEHAFRIEFFGDEIDRIREVDTLTGEVIGDRDHIAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +N A+  IK+E+  ++ + EKEG+LLEAQRL+QR TYD+EM+   G   
Sbjct: 250 PATHFLTSDDVMNVALPEIKDEMDKQVAKFEKEGKLLEAQRLKQRTTYDIEMMREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++  R PG+PP TL ++ P+D LL VDESH T+PQI GMY GD  RK  L  Y
Sbjct: 310 GIENYSRFMDRRKPGQPPFTLLDFFPDDFLLVVDESHQTMPQIRGMYNGDQARKQQLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL   E+       + +SATPG +EL+Q +  +V Q+IRPTGL+DP ++
Sbjct: 370 GFRLPSALDNRPLTLSEFEQHVHQVVYMSATPGPYELDQTKD-VVNQVIRPTGLLDPTID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+V+Y+HS++KTLE
Sbjct: 429 VRPIMGQMDDLVGEINKRVDKHERVFVTTLTKKMAEDLTDYLKDLGIKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLR++ SLIQTIGRA+R
Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIGRASR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-LE 739
           N +  VI+YADT+T S++ AIDET  RR  Q+ +NKKH I P ++ + I  +I      +
Sbjct: 549 NEHGAVIMYADTVTDSMKAAIDETAHRRAIQIAYNKKHGITPTTIVKPIRNLISITKGSD 608

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           DA   +  +++    +SKK  K  L  L ++M  AA  L+FE+AA +RD I  LK 
Sbjct: 609 DAGEKDDFVESDFEQMSKKDQKDMLARLTEEMRDAAKKLDFEQAATLRDTIIELKG 664


>gi|289679886|ref|ZP_06500776.1| excinuclease ABC subunit B [Pseudomonas syringae pv. syringae FF5]
          Length = 558

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/556 (60%), Positives = 428/556 (76%), Gaps = 1/556 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +V+A
Sbjct: 4   FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+I+P+  +  A R+ +F +++E +S F PLTG+ IR +     Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 244 PKSHYVTPRETLIEAMENIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EY
Sbjct: 304 GIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G IVEQ++RPTGLVDP +E
Sbjct: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDPQIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A TQV+D+  EI+  A    R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ T+E
Sbjct: 423 IRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKS 696
           N+N + ILYAD IT S
Sbjct: 543 NLNGRAILYADRITGS 558


>gi|116625433|ref|YP_827589.1| excinuclease ABC subunit B [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228595|gb|ABJ87304.1| Excinuclease ABC subunit B [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 659

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/655 (52%), Positives = 471/655 (71%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P GDQ  AIA+L +G+   E+ Q+LLGVTGSGKTFTMAKVIEA+ RPA+V+A
Sbjct: 3   FRLAVTYEPRGDQVNAIAELTRGLREGEQHQVLLGVTGSGKTFTMAKVIEAVNRPALVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+P +D YIEK++++N+++D++R 
Sbjct: 63  HNKTLAAQLYHEFKTFFPENAVEYFVSYYDYYQPEAYIPASDVYIEKDATVNDELDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT+SL ER DC++VSSVSCIYG+GS E+Y  M++ L+ G  + + ++++ LV+  Y R 
Sbjct: 123 AATKSLFERRDCVIVSSVSCIYGLGSPEAYYGMLLMLEKGQKISRNQIVTRLVEILYDRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD IE++P++ +D A+R+ ++G++IE +S+  PL GQ  +  + + IY
Sbjct: 183 DADFRRGTFRVRGDVIEVYPTY-DDDAYRIELWGDEIENLSQIDPLLGQVKQTYQRLPIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV    T   AM+ I+ EL+    EL  +G+ +EAQRL QR  +DLEM++  G C 
Sbjct: 242 PKTHYVMSAETKEDAMQSIRNELEWWHKELVNQGKAIEAQRLFQRTMFDLEMMKEIGYCH 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +GR PGE PPTL +Y+P D+++F+DESH T+PQ+ GMY GD  RK  L  +
Sbjct: 302 GIENYSRHFSGRLPGEAPPTLLDYLPNDAVMFLDESHQTVPQLHGMYHGDRSRKEVLVAH 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS +DNRPL FEE+       + VSATPG +EL +  G++VEQIIRPTGL+DP VE
Sbjct: 362 GFRMPSALDNRPLTFEEFEHRVNQLVYVSATPGPYELTKSSGVVVEQIIRPTGLLDPTVE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + QV+D+  +I    +   RIL+T LTKRMAEDL+EY  E  +R RY+HSEV TL+
Sbjct: 422 IRPVKGQVDDLLGQIRARVENNQRILVTTLTKRMAEDLSEYYSEVGVRCRYLHSEVTTLD 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI+I+RDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  +LIQTIGRAAR
Sbjct: 482 RIKILRDLRRGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSWGALIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V    ILYAD +T S++ A+ ET RRR+ Q+E+N++++I PQS+ + I   +  +   D
Sbjct: 542 HVEGHAILYADVMTDSMRKALAETARRRQTQIEYNEENHITPQSIIKAIDMSLVAVAEGD 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T  +  D +   L+  +    +  L ++M  AA    FE AA++RD +K LK+
Sbjct: 602 YVTVPLEDDPEVEDLTPDQRLRFIGELEERMREAARKFEFERAAQLRDRVKALKA 656


>gi|325679137|ref|ZP_08158731.1| excinuclease ABC, B subunit [Ruminococcus albus 8]
 gi|324109261|gb|EGC03483.1| excinuclease ABC, B subunit [Ruminococcus albus 8]
          Length = 656

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/655 (54%), Positives = 467/655 (71%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY  SGDQP A+  L+KGI S  + Q L+GVTGSGKTFTMA VIE + RP +V+A
Sbjct: 4   FQLVSDYKLSGDQPQAVDALVKGIQSGMREQTLMGVTGSGKTFTMANVIERLNRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NKILAAQL SEFK FFP+NAVEYFVSYYDYYQPEAYVP TD YIEK+SSIN++ID++RH
Sbjct: 64  HNKILAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDVYIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT ++ ER D I+V+SVSCIY +G    Y  M+V ++ G    + EL++ LV  QY+R 
Sbjct: 124 SATSAITERRDVIIVASVSCIYSLGDPSEYKSMVVSIRKGAEKSRDELIAQLVGIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +R  FRV GD +EIFP++  D A RV  FG++I+ I+E   LTG+++  +    ++
Sbjct: 184 DINFVRNKFRVRGDIVEIFPANSTDTALRVEFFGDEIDRITEVNVLTGERLSELTHAAVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+  R  +  A+  IKEEL  R+   E +G L+EAQR++QR  YD+EMLE  G C 
Sbjct: 244 PASHYIVGREKMLDAIGEIKEELAERVKYFEDKGMLIEAQRIQQRTNYDMEMLEEIGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L  R  G  P TL +++P+D LL VDESHV++PQ+ GMY GD  RK TL  Y
Sbjct: 304 GIENYSRVLARRPKGAVPFTLLDFMPDDFLLMVDESHVSLPQVRGMYAGDRARKETLVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       I VSATPG  E E+    IVEQ+IRPTGL+DP + 
Sbjct: 364 GFRLPSALDNRPLQFDEFYSHINQAIFVSATPGPIEKEKS-AQIVEQVIRPTGLLDPLIS 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  Q+ED+  EIN   ++  R+L+T LTK+MAEDLT YL   +++VRYMH ++ ++E
Sbjct: 423 VRPSDGQIEDLLSEINQRVEKNQRVLVTTLTKKMAEDLTAYLKGFDVKVRYMHHDIDSIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+++LIQTIGRAAR
Sbjct: 483 RMEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSESALIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD++T+S++ AI ET RRR  Q+++N++H I P+++ + I +VI+    E+
Sbjct: 543 NAEGTVIMYADSVTRSMENAIRETERRRAIQMQYNEEHGITPKTIVKDIRDVIEISTKEE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A  +      Q   LSK + +  ++ L K+M  AA  L FE AA +RD+I  LK 
Sbjct: 603 AEYSA----RQATKLSKAEQQRLIEKLTKEMKEAAKLLEFEHAAFLRDKIAELKG 653


>gi|291518275|emb|CBK73496.1| excinuclease ABC, B subunit [Butyrivibrio fibrisolvens 16/4]
          Length = 665

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/655 (52%), Positives = 469/655 (71%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI  L++G     ++Q LLGVTGSGKTFTMA VIE + +P +++A
Sbjct: 9   FKLHSEYKPTGDQPQAIEDLVRGFKEGNQMQTLLGVTGSGKTFTMANVIEKLNKPTLIIA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYI K+SSIN++ID++R 
Sbjct: 69  HNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIAKDSSINDEIDKLRL 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+VSSVSCIYGIG  + +  M+V L+ GD  ++ +++  L+  QY R 
Sbjct: 129 SATASLSERRDVIIVSSVSCIYGIGEPDDFQNMMVSLRPGDFKDRDDVIHELINIQYMRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +E+ P+++ D   R+  FG++I+ I E   +TGQ  R +E + I+
Sbjct: 189 DMDFDRGTFRVRGDVLEVIPANVSDYGIRIEFFGDEIDRICETDIMTGQVKRELEHVAIF 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +N+A   I+ EL+ R+   + E +L+EAQR+ +R  +D+EML  TG C 
Sbjct: 249 PASHYVIPQDKINSACASIEAELEERVKFFKSEDKLIEAQRIAERTNFDIEMLRETGFCS 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++T + PGEPP  L +Y  +D L+ +DESH+T+PQI GM+ GD  RK TL EY
Sbjct: 309 GIENYSRHMTNQQPGEPPKCLIDYFDDDFLIIIDESHITLPQIRGMFAGDQARKRTLVEY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATPG +E E+ + +  EQ+IRPTGL+DP VE
Sbjct: 369 GFRLPSALDNRPLNFGEFESKIDQIMFVSATPGDYE-EEHEMLRTEQVIRPTGLLDPEVE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+++EI     +  ++++T LTKRMAEDLT+YL E  +RV+YMHS++ T+E
Sbjct: 428 VRPVEGQIDDLFNEIKKETAKKNKVMITTLTKRMAEDLTDYLAELGVRVKYMHSDIDTME 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 488 RAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSERSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S++ AI ET RRRE Q+ +N+ H I P+++++ + E+I   + +D
Sbjct: 548 NSEGHVIMYADTMTESMEKAISETERRREIQMAYNEAHGITPKTIQKSVRELIS--ISKD 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            A   +        ++K++ +  ++ ++K+M  AA  LNFE AA  RD++  LK+
Sbjct: 606 IAKKEMQFKKDPEEMNKQELEKLIEDIQKKMKKAASELNFEAAAEYRDKMVELKN 660


>gi|239978861|ref|ZP_04701385.1| excinuclease ABC subunit B [Streptomyces albus J1074]
 gi|291450744|ref|ZP_06590134.1| excinuclease ABC subunit B [Streptomyces albus J1074]
 gi|291353693|gb|EFE80595.1| excinuclease ABC subunit B [Streptomyces albus J1074]
          Length = 715

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/702 (50%), Positives = 482/702 (68%), Gaps = 40/702 (5%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++   + +  F++ + Y PSGDQPAAIA L + + + EK  +LLG TG+GK+ T A +IE
Sbjct: 4   VSKIERTVAPFEVVSPYQPSGDQPAAIADLDRRVRAGEKDVVLLGATGTGKSATTAWMIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 64  KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V LK+G+ +++  LL 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGEEIDRDALLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V+ QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE ++  +PLTG+ 
Sbjct: 184 RFVEIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIETLTTLHPLTGEI 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I + + + ++  SHYV     +  A+  I++EL  RL  LEK+G+LLEAQRL  R TYD+
Sbjct: 243 ISDEQQLYVFPASHYVAGPERMERAVNDIEQELGERLTVLEKQGKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML   GSC  IENYS +  GR PG PP TL +Y PED LL +DESHVT+PQI  M+ GD
Sbjct: 303 EMLRQIGSCSGIENYSMHFDGREPGTPPHTLLDYFPEDFLLVIDESHVTVPQIGAMHEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG++EL +  G  VEQIIR
Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFQERVGQTVYLSATPGNYELSRSDG-FVEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+VR
Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRTRTEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS
Sbjct: 482 YLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +N ++ I+PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADRITPAMEKAIDETNRRREKQIAYNTENGIDPQPLRKKIN 601

Query: 731 EVIDPILLEDAATTN-ISIDAQQLSLSKKKG----------------------------- 760
           +++  I  ED  T   +    +Q    K K                              
Sbjct: 602 DIVATIAREDVDTEALLGTGYRQTKDGKAKAPVPDLGGGYDAPKAAKGGKKAAKKAAGTP 661

Query: 761 --------KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      ++ +  +M  AA +L FE AAR+RDE+  +K
Sbjct: 662 TDRPAAELAGQIEEMTNRMRAAAADLQFEVAARLRDEVGEMK 703


>gi|283458177|ref|YP_003362794.1| helicase subunit of the DNA excision repair complex [Rothia
           mucilaginosa DY-18]
 gi|283134209|dbj|BAI64974.1| helicase subunit of the DNA excision repair complex [Rothia
           mucilaginosa DY-18]
          Length = 722

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/699 (50%), Positives = 480/699 (68%), Gaps = 47/699 (6%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA+L + + + EK  +L+G TG+GK+ T A +IEA+QRP +V+ 
Sbjct: 14  FEVVSPFQPAGDQPKAIAELTERVQNGEKDIVLMGATGTGKSATAAWLIEAVQRPTLVLV 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E +   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+RH
Sbjct: 74  QNKTLAAQLANELRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV++VSCIYG+G+ E Y   +V L+ G+ V++ ELL   V  QY R 
Sbjct: 134 SATNSLLTRRDVVVVATVSCIYGLGTPEEYVAQMVTLRRGEEVDRDELLRQFVAMQYARN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E+ A R+  FG++IE I   +PLTG+ IR  E + ++
Sbjct: 194 DMDFHRGTFRVRGDTVEIIPMY-EENAIRIEFFGDEIEAIYTLHPLTGEVIREEEEMYVF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+     +  A+  I++EL+ RL  LE +G+LLEAQRL  R TYDLEM+E  G C 
Sbjct: 253 PASHYIAGAERMAKAITSIEDELRERLQTLESQGKLLEAQRLRMRTTYDLEMMEQMGFCN 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG  P  L +Y P+D LL +DESHVT+PQ+  MY GD  RK TL E+
Sbjct: 313 GIENYSRHIDGRAPGSAPNCLLDYFPDDFLLIIDESHVTVPQVGAMYEGDMSRKRTLVEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++EE+      TI +SATPG +EL Q  G  VEQIIRPTGL+DP + 
Sbjct: 373 GFRLPSAMDNRPLKWEEFLERIGQTIYLSATPGKYELSQADGY-VEQIIRPTGLIDPEIV 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ +EI +  ++  R+L+T LTKRMAEDLTEYL +  ++V+Y+HS+V TL 
Sbjct: 432 VKPTKGQIDDLLEEIRVRVERDERVLVTTLTKRMAEDLTEYLLQHGVKVQYLHSDVDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 492 RVELLRELRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+++AIDET RRRE Q  +N++H I+PQ +++KI ++ D +  E+
Sbjct: 552 NVSGQVHMYADKITDSMRVAIDETNRRREIQQAYNREHGIDPQPLRKKIADITDVLAREE 611

Query: 741 AATTNI-------SIDAQQLSLSKKKGKAH------------------------------ 763
             T  +          A+ +S   K G A                               
Sbjct: 612 EDTRELLQQRKSGKKGARTVSAGAKTGSATSSKIATSTPESEELLARAEARVRADGLAAA 671

Query: 764 --------LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   ++ + +QM +AA+NL FE AAR+RDE+  LK
Sbjct: 672 PAEDLLDLIEQMNEQMRVAAENLQFELAARLRDELADLK 710


>gi|260497929|ref|ZP_05816047.1| excinuclease ABC, B subunit [Fusobacterium sp. 3_1_33]
 gi|260196544|gb|EEW94073.1| excinuclease ABC, B subunit [Fusobacterium sp. 3_1_33]
          Length = 663

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/659 (53%), Positives = 480/659 (72%), Gaps = 16/659 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ ++Y P+GDQP AI  ++K I +  K Q+LLGVTGSGKTFT+A VIE +QRP+++
Sbjct: 4   NLFKIHSEYRPTGDQPTAINSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPSLI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID++
Sbjct: 64  IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     + +KEL+  LV  +Y 
Sbjct: 124 RNAATAALIHRRDVIIVASVSSIYGLGSPDTYRKMTIPIDKQTGISRKELIKRLVDLRYN 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377
           R D+   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQK++ N+E I
Sbjct: 184 RNDVAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLERI 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + Y+T     +  +K IK++LK+ + + E E +LLEAQRL+QR  YDLEM+   G
Sbjct: 243 VIYPATQYLTADDDKDRIIKEIKDDLKVEVKKFEDEKKLLEAQRLKQRTEYDLEMITEIG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSRYL G+NPGE P TLFEY P+D LLF+DESH+T+PQI GMY GD  RK +L
Sbjct: 303 YCKGIENYSRYLAGKNPGETPDTLFEYFPKDFLLFIDESHITVPQIRGMYNGDRARKESL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E GFRL + +DNRPLRFEE+      T+ +SATPG +ELE     I EQ+IRPTG+VDP
Sbjct: 363 VENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFELEVSDNHIAEQLIRPTGIVDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR  + QV+D+ DEI   A +  R+L+T LTK++AE+LTEY  E  ++V+YMHS++ 
Sbjct: 423 EIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTIGR
Sbjct: 483 TLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  ++I+P+S+ ++I        
Sbjct: 543 AARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYNHIDPKSIVKEIA------- 595

Query: 738 LEDAATTNISIDAQQLSLSKK--KGKAHLK----SLRKQMHLAADNLNFEEAARIRDEI 790
            ED    +  I+ ++   SKK  + KA ++     L K++    + L+FE+A  +RDE+
Sbjct: 596 -EDLINLDYGIEEKKFENSKKVFRNKADIEKEITKLEKKIKKLVEELDFEQAIVLRDEM 653


>gi|145295505|ref|YP_001138326.1| excinuclease ABC subunit B [Corynebacterium glutamicum R]
 gi|140845425|dbj|BAF54424.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 720

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/673 (53%), Positives = 478/673 (71%), Gaps = 11/673 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +++ P+GDQPAAI +L + +   E+  +L+G TG+GK+ T A +IE  QRP +VMA
Sbjct: 49  FVVVSEFEPAGDQPAAIKELDERLDRGERDVVLMGATGTGKSATAAWLIEKQQRPTLVMA 108

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH
Sbjct: 109 PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 168

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ +SY    V L +G+ +++   L  LV  QY+R 
Sbjct: 169 SATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLNVGEEIDRDRFLRLLVDIQYERN 228

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+G  RG FRV GD+++I P++ E++A R+  FG++I+ +   +PLTG  IR V  I+I+
Sbjct: 229 DVGFTRGAFRVKGDTVDIIPAY-EELAVRIEFFGDEIDALYYIHPLTGDTIRQVNEIRIF 287

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  IK EL++RL +LE  G+LLEAQRL  R  YDLEM+E  G C 
Sbjct: 288 PATHYVAGPERMEKAVTDIKAELEVRLADLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 347

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM+ GD  RK  L E+
Sbjct: 348 GIENYSRHIDGRGEGTAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 407

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL +EE++  R  T+ +SATPG +E+    G  VEQ+IRPTGLVDP V 
Sbjct: 408 GFRLPSAMDNRPLTWEEFDERRGQTVFMSATPGKFEIAAADGEFVEQVIRPTGLVDPKVT 467

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI     +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ TL+
Sbjct: 468 VKPTKGQIDDLIHEIRQRTDKDERVLVTTLTKKMAEDLTDYLLENGIRVRYLHSDIDTLQ 527

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 528 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 587

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738
           NV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +NK+H I+PQ +++KI +++D +    
Sbjct: 588 NVSGEVIMYADKITDSMQYAIEETDRRREKQVAYNKEHGIDPQPLRKKIADILDQVYDNS 647

Query: 739 EDAATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            D A  + S DA  +      S+  K+ +  +  L  QM  AA  L FE A R+RDEI  
Sbjct: 648 ADGAGPSASGDAAVVAKPDVSSMPAKEVQKLIDDLSAQMAAAARELKFELAGRLRDEIFE 707

Query: 793 LKSSPYFQGLDDS 805
           LK     +G+ D+
Sbjct: 708 LKKE--LRGIKDA 718


>gi|333027919|ref|ZP_08455983.1| putative excinuclease ABC subunit B [Streptomyces sp. Tu6071]
 gi|332747771|gb|EGJ78212.1| putative excinuclease ABC subunit B [Streptomyces sp. Tu6071]
          Length = 720

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/699 (50%), Positives = 481/699 (68%), Gaps = 42/699 (6%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           + +  F++ + Y PSGDQP AIA+L K +   EK  +LLG TG+GK+ T A +IE +QRP
Sbjct: 12  RTVAPFEVVSPYSPSGDQPTAIAELEKRVKGGEKDVVLLGATGTGKSATTAWMIERLQRP 71

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE++
Sbjct: 72  TLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEV 131

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           +R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V LK+GD +++ ELL   V  
Sbjct: 132 ERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGDELDRDELLRRFVDI 191

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ I + +
Sbjct: 192 QYTRNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSLLHPLTGEVISDDQ 250

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  SHY+     +  A+K I++EL++RL ELEK+G+LLEAQRL  R TYD+EML  
Sbjct: 251 QVYVFPASHYIAGPERMERAIKGIEKELEVRLAELEKQGKLLEAQRLRMRTTYDIEMLRQ 310

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G+C  +ENYS +   R PG PP TL +Y PED LL +DESHVT+PQI  MY GD  RK 
Sbjct: 311 IGTCSGVENYSMHFDDREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKR 370

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL ++GFRLPS +DNRPL++EE+       + +SATPG++EL +  G  VEQIIRPTGLV
Sbjct: 371 TLVDHGFRLPSALDNRPLKWEEFQKRIGQAVYLSATPGNYELSRSDG-FVEQIIRPTGLV 429

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP + ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I VRY+HS+
Sbjct: 430 DPEIVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMAEDLTDYFLELGINVRYLHSD 489

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTI
Sbjct: 490 VDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTI 549

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+ +V +YAD IT +++ AIDET RRR KQ+ +N +  I+PQ +++KI +++  
Sbjct: 550 GRAARNVSGQVHMYADKITPAMERAIDETNRRRAKQIAYNTERGIDPQPLRKKINDIVAS 609

Query: 736 ILLEDAATTNISIDAQQLSLSKK---------KGKA------------------------ 762
           I  E+  T ++     + +   K          GKA                        
Sbjct: 610 IAREEVDTDSLLGTGYRQAKEGKGAKTPVPALGGKATAESGKAAKGKAKKGKAATAPTDQ 669

Query: 763 -------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   ++ +  +M  AA +L FE AAR+RDE+  +K
Sbjct: 670 PGAALAQQIEEMTDRMRAAAADLQFEVAARLRDEVSEMK 708


>gi|325674226|ref|ZP_08153915.1| excision endonuclease subunit UvrB [Rhodococcus equi ATCC 33707]
 gi|325554906|gb|EGD24579.1| excision endonuclease subunit UvrB [Rhodococcus equi ATCC 33707]
          Length = 718

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/690 (51%), Positives = 481/690 (69%), Gaps = 31/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y P+GDQP AI +L + +   EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 28  FQVVSEYEPAGDQPQAIDELERRLREGEKDVVLLGATGTGKSATTAWLIERVQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 88  PNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ +SY    +QL++G  V++  LL  LV  QY R 
Sbjct: 148 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSIQLEVGVEVDRDALLRLLVDVQYNRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG+++E +   +PLTG  +R V+T++I+
Sbjct: 208 DMAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEVEALYYLHPLTGDVVRQVDTVRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A++ I+ EL+ RL +LE  G+LLEAQRL  R  YDLEM++  G C 
Sbjct: 267 PATHYVAGPERMERAVQDIEAELEERLADLENRGKLLEAQRLRMRTQYDLEMIKQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED LL +DESHVT+PQI  MY GD  RK  L E+
Sbjct: 327 GIENYSRHIDGRPAGSAPATLIDYFPEDFLLVIDESHVTVPQIGAMYEGDMSRKRNLVEF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG++EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSATDNRPLTWEEFAGRIGQTVYLSATPGAYELGQAGGEFVEQVIRPTGLVDPEVV 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   +++  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ TL 
Sbjct: 447 VKPTKGQIDDLVHEIRERSERDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSDIDTLR 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+Q AI+ET RRREKQ+ +N +  ++PQ +++KI +++D +  E+
Sbjct: 567 NVSGQVHMYADKITDSMQRAIEETERRREKQIAYNLEKGVDPQPLRKKIADILDQV-YEE 625

Query: 741 AATTNISIDAQQLSLSKKK---GKAH------------------------LKSLRKQMHL 773
           A  T + +     + S+ +   G+A                         +K L  QM  
Sbjct: 626 AEDTEVGVGGSGRNASRGRRAQGEAGRAVSAGIYEGRDVKSMPRAELADLVKELTDQMMN 685

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE A R+RDEI  LK     +G+D
Sbjct: 686 AARDLQFELAGRLRDEIADLKKE--LRGMD 713


>gi|257869223|ref|ZP_05648876.1| excinuclease ABC [Enterococcus gallinarum EG2]
 gi|257803387|gb|EEV32209.1| excinuclease ABC [Enterococcus gallinarum EG2]
          Length = 665

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/658 (53%), Positives = 473/658 (71%), Gaps = 7/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL+ G+   +K Q+LLG TG+GKT+T++ +I+ + +P +++A
Sbjct: 12  FELLSKYQPAGDQPEAIHQLVDGVVGGKKAQILLGATGTGKTYTVSNLIKEVNKPTLIIA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 72  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCI+G+GS   Y++ +V L++G    + +LL  ++  Q++R 
Sbjct: 132 SATSSLLERNDVIVVASVSCIFGLGSPIEYAKQVVSLRVGMEKPRDQLLKEMIDIQFERN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A R+  FG++I+ I E   LTG+ +   E + I+
Sbjct: 192 DIDFQRGRFRVRGDVVEIFPASRDERALRIEFFGDEIDRIREVDALTGEILGETEHVSIF 251

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I++EL+ RL  L  E +LLEAQRLEQR  YD+EML   G   
Sbjct: 252 PATHFVTNEDHMEHAIASIQKELEDRLAVLRSENKLLEAQRLEQRTNYDIEMLREMGYTS 311

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ +DESHVT+PQI GMY GD  RK  L +Y
Sbjct: 312 GIENYSRHMDGRKEGEPPYTLLDFFPDDFLIVIDESHVTMPQIRGMYNGDRARKQMLVDY 371

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ   +I +QIIRPTGL+DP VE
Sbjct: 372 GFRLPSALDNRPLRLEEFEEHVNQIVYVSATPGPYEHEQTDTVI-QQIIRPTGLLDPVVE 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+Y  E  I+V+Y+HS+VKTLE
Sbjct: 431 VRPIMGQIDDLVGEINERVEKDQRVFVTTLTKKMAEDLTDYFKELGIKVKYLHSDVKTLE 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FDVLVGINLLREG+D+PE  LVAILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 491 RTEIIRDLRLGEFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV--IDPILL 738
           N + KVI+YAD +T S+Q AIDET+RRR  Q  +NK+H+I P+++ ++I ++  I  +  
Sbjct: 551 NSDGKVIMYADKMTDSMQRAIDETSRRRSIQEAYNKEHDIEPKTIIKEIRDLIAITKVAE 610

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           E    T  S +     +++++    L  L K+M  AA  L+FE AA +RD I  LK++
Sbjct: 611 ESGDYTTTSYE----DMTREEKATLLLKLEKEMKDAAKALDFETAATLRDTILELKAA 664


>gi|315650759|ref|ZP_07903811.1| excision endonuclease subunit UvrB [Eubacterium saburreum DSM 3986]
 gi|315486966|gb|EFU77296.1| excision endonuclease subunit UvrB [Eubacterium saburreum DSM 3986]
          Length = 655

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/656 (53%), Positives = 460/656 (70%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI  L+ G     + Q LLG TGSGKTFTMA VI+ +Q+P +++A
Sbjct: 3   FKLHSEFLPTGDQPQAIEALVNGFKEGNQFQTLLGATGSGKTFTMANVIQKLQKPTLIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH
Sbjct: 63  HNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+GS   Y +M+V L+ G   ++ +++  L+  QY R 
Sbjct: 123 SATASLSERKDVIIVASVSCIYGLGSPIDYQEMVVSLRPGMERDRDDVIRKLIDMQYDRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +E+FP+     A R   FG+++++I E   LTG  I  +    I+
Sbjct: 183 DMDFHRGTFRVRGDVLEVFPAASTSTALRFEFFGDEVDKILEIDTLTGNIIAELAHAVIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     + TA + I +E + R+   + E +L+EAQR+++R  +D+EM+  TG C 
Sbjct: 243 PASHYVVAPEKMKTATENILKECEERVSFFKSEDKLIEAQRIDERTHFDVEMMRETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PGEPP TL +Y  +D L+ VDESH+TIPQ+ GMY GD  RK TL  Y
Sbjct: 303 GIENYSRHLTGSAPGEPPYTLIDYFKDDFLIIVDESHITIPQVRGMYAGDRSRKMTLVNY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATP  +E E  +    EQIIRPTGL+DPP+ 
Sbjct: 363 GFRLPSALDNRPLEFSEFESKIDQMLFVSATPSVYEKEH-EMFRTEQIIRPTGLLDPPIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N   ++  +IL+T LTKRMAEDLTEY+ E  IRVRY+HS++ TLE
Sbjct: 422 VRPVEGQIDDLIGEVNKEIEKKNKILITTLTKRMAEDLTEYMKEVGIRVRYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL KFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RAEIIRDMRLDKFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD +T S++ AIDET RRR  Q  +NK+H I P ++K+ +    D I +  
Sbjct: 542 NADGHVIMYADNMTDSMKAAIDETYRRRGIQEAYNKEHGITPTTIKKAVR---DLIAISK 598

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           AA +  +ID    S+ K +    +K L K+M  AA  L+FE AA +RD++  L++S
Sbjct: 599 AADSVSTIDKDVESMDKAEINKLIKELEKKMFKAAAELDFENAALLRDKVSELRAS 654


>gi|300933415|ref|ZP_07148671.1| excinuclease ABC subunit B [Corynebacterium resistens DSM 45100]
          Length = 707

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/670 (52%), Positives = 481/670 (71%), Gaps = 17/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L + +   E+  +L+G TG+GK+ T A +IE +QRP +VMA
Sbjct: 28  FEVISEYQPAGDQPHAIEELAQRLDRGERDVVLMGATGTGKSATAAWLIEKVQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E ++  P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH
Sbjct: 88  PNKTLAAQLANELRSLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VVSSVSCIYG+G+ +SY    V LK+G+ V++ + L  LV  QY+R 
Sbjct: 148 SATSNLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLKVGEEVDRDQFLRLLVDIQYQRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD+++I P++ E++A RV  FG++I+ +   +PLTG  IR V+ ++I+
Sbjct: 208 DMSFTRGAFRVKGDTVDIIPAY-EELAVRVEFFGDEIDSLFYIHPLTGDVIREVDELRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  IKEEL+ RL ELE  G+LLEAQRL  R  YDLEM++  G   
Sbjct: 267 PATHYVAGPERMEKAIAAIKEELEQRLAELENRGKLLEAQRLRMRTEYDLEMIQQVGFTS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM+ GD  RK  L E+
Sbjct: 327 GIENYSRHIDGRPAGSAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEH 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE++  +   + +SATPG +E+    G  VEQ+IRPTGLVDP VE
Sbjct: 387 GFRLPSALDNRPLTWEEFDDRKGQCVYMSATPGDYEIAAAGGEFVEQVIRPTGLVDPKVE 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+ ++I    ++  R+L+T LTKRMAEDLT+YL E  ++VRYMHS++ TL+
Sbjct: 447 VRPTKGQIDDLIEQIRQRTEKNERVLVTTLTKRMAEDLTDYLLEHGVKVRYMHSDIDTLK 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736
           NV+ +VI+YAD IT+S+Q AIDET RRR KQ+ +NK+H I+PQ +++KI +++D +    
Sbjct: 567 NVSGEVIMYADKITESMQYAIDETERRRAKQIAYNKEHGIDPQPLRKKIADILDQVAELE 626

Query: 737 -----------LLEDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
                      L  DAA  +  ID +Q   +++ + +  +  L +QM  AA  L FE A 
Sbjct: 627 GKEAAEDVAASLSSDAAVASPGIDQKQAGEMARPQLEKLISDLTEQMKAAARELKFELAG 686

Query: 785 RIRDEIKRLK 794
           R+RDEI+ LK
Sbjct: 687 RLRDEIQDLK 696


>gi|331082518|ref|ZP_08331643.1| UvrABC system protein B [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400496|gb|EGG80126.1| UvrABC system protein B [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 662

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/656 (54%), Positives = 472/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  Y P+GDQP AIA+L+KG     + Q LLGVTGSGKTFTMA VI+ +Q+P +V+A
Sbjct: 4   FKLKAPYKPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLQKPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAYVP +DTYI K+SS+N++ID++R 
Sbjct: 64  HNKTLAAQLYGEFKEMFPDNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSVNDEIDKLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+VSSVSCIYGIGS + Y  MI+ L+ G   ++ E++  L+  QY R 
Sbjct: 124 SATSSLSERKDVIIVSSVSCIYGIGSPDDYQNMIISLRPGMEKDRDEVVRELIDIQYDRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGTFRV GD +EIFP+   + A RV  FG++I+ I+E   LTG+    +  I I+
Sbjct: 184 EMDFHRGTFRVRGDVLEIFPADYSETAVRVEFFGDEIDRITEVDILTGEIKSALNHIAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P   +  A   I+EELK R+   + E +LLEAQR+ +R  +D+EML+ TG C 
Sbjct: 244 PASHYVVPIEKIRKAAVAIEEELKERVDYFKGEDKLLEAQRISERTNFDIEMLKETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L+G  PG+PP TL +Y  +D L+ +DESH TIPQI GMY GD  RK TL +Y
Sbjct: 304 GVENYSRHLSGLKPGQPPYTLIDYFGDDFLIIIDESHKTIPQIRGMYAGDQSRKQTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       + VSATPG +E E  + +  +QIIRPTGL+DP VE
Sbjct: 364 GFRLPSAKDNRPLNFEEFEDKIDQILFVSATPGEYE-ENHELLRADQIIRPTGLLDPEVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N   ++  +IL+T LTKRMAEDLTEY+ E  IRVRY+HS++ TLE
Sbjct: 423 VRPVEGQIDDLISEVNKEIKKKNKILITTLTKRMAEDLTEYMKELGIRVRYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RTQIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSEVSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S+++AIDET RRR  Q ++N++H I P+++K+ + ++I   + + 
Sbjct: 543 NADGRVIMYADVITDSMRIAIDETMRRRALQQKYNEEHGITPKTIKKAVRDLIS--ISKA 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A T   ++    S+S+K+ +  +K ++KQM  AA +LNFE AA +RD++  LK +
Sbjct: 601 VAETEEKLEKDPESMSRKELENLIKKVQKQMQAAAADLNFEMAASLRDKMLELKKN 656


>gi|166030536|ref|ZP_02233365.1| hypothetical protein DORFOR_00197 [Dorea formicigenerans ATCC
           27755]
 gi|166029698|gb|EDR48455.1| hypothetical protein DORFOR_00197 [Dorea formicigenerans ATCC
           27755]
          Length = 659

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/654 (53%), Positives = 466/654 (71%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI QL++G     + Q LLGVTGSGKTFTMA VI  + RP +++A
Sbjct: 4   FNLVSEYSPTGDQPQAIEQLVQGFKEGNQCQTLLGVTGSGKTFTMANVIAQLNRPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYI K+SS+NE+ID++R 
Sbjct: 64  HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSVNEEIDKLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L+ER D IVV+SVSCIYG+G  E++ QM+V L+ G   ++ E+L  L+  QY R 
Sbjct: 124 SATAALIERRDVIVVASVSCIYGLGEPENFEQMMVSLRPGMEKDRDEVLRQLIDIQYDRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+IE+ P+   D A RV  FG++I+ ISE   LTG+    +  I I+
Sbjct: 184 DMDFKRGTFRVRGDTIEVVPADRGDTAIRVEFFGDEIDRISEIDMLTGEIKNTLNHIAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +  A+K I+ EL+ ++   + E +LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 244 PASHYVVPKERMEKAIKNIEIELEEQVKYFKGEDKLLEAQRIAERTNFDIEMMRETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L G  PG+PP TL +Y P+D ++ +DESH T+PQI GMY GD  RK TL +Y
Sbjct: 304 GIENYSRHLAGLAPGQPPNTLIDYFPDDFIMMIDESHKTVPQIGGMYHGDQSRKRTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATPG +E E+ + +  +Q+IRPTGL+DP +E
Sbjct: 364 GFRLPSALDNRPLSFEEFESKIDQVLFVSATPGQYE-EEHELLRAQQVIRPTGLLDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+        +IL+T LTKRMAEDLT+Y+ E  IRVRY+HS++ TLE
Sbjct: 423 VRPVEGQIDDLIGEVKKEIAGKHKILITTLTKRMAEDLTDYMRELGIRVRYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSL+QTIGRAAR
Sbjct: 483 RTEIVRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLVQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S++ AI+ET RRR+ Q+ +N++H I P ++++ + ++I   + + 
Sbjct: 543 NAEGHVIMYADNMTDSMKNAIEETKRRRKIQMAYNEEHGITPTTIQKSVRDLIS--ISKK 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A T + +D    S+S+K+    +  + KQM  AA  LNFE AA +RD++  LK
Sbjct: 601 VAATELQMDKDPESMSEKELLKLIADVTKQMKKAAAELNFEAAAELRDKLIELK 654


>gi|295839531|ref|ZP_06826464.1| excinuclease ABC subunit B [Streptomyces sp. SPB74]
 gi|197696890|gb|EDY43823.1| excinuclease ABC subunit B [Streptomyces sp. SPB74]
          Length = 718

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/700 (50%), Positives = 478/700 (68%), Gaps = 43/700 (6%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           + +  F++ + Y PSGDQP AIA+L K +   EK  +LLG TG+GK+ T A +IE +QRP
Sbjct: 9   RTVAPFEVVSPYSPSGDQPTAIAELEKRVKGGEKDVVLLGATGTGKSATTAWMIERLQRP 68

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE++
Sbjct: 69  TLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEV 128

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           +R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V LK+GD V++ ELL   V  
Sbjct: 129 ERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVSLKVGDEVDRDELLRRFVDI 188

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ I + +
Sbjct: 189 QYARNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSLLHPLTGEVISDDQ 247

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  SHY+     +  A+  I+ EL+ RL ELEK+G+LLEAQRL  R TYD+EML  
Sbjct: 248 QVYVFPASHYIAGPERMERAVSGIEAELEQRLAELEKQGKLLEAQRLRMRTTYDIEMLRQ 307

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G+C  +ENYS +   R PG PP TL +Y PED LL +DESHVT+PQI  MY GD  RK 
Sbjct: 308 IGTCSGVENYSMHFDDREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKR 367

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL ++GFRLPS +DNRPL++EE+       + +SATPG++EL +  G  VEQIIRPTGLV
Sbjct: 368 TLVDHGFRLPSALDNRPLKWEEFQKRIGQAVYLSATPGNYELSRSDG-FVEQIIRPTGLV 426

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP + ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I VRY+HS+
Sbjct: 427 DPEIVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMAEDLTDYFLELGINVRYLHSD 486

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTI
Sbjct: 487 VDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTI 546

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+ +V +YAD IT +++ AIDET RRR KQ+ +N +  I+PQ +++KI +++  
Sbjct: 547 GRAARNVSGQVHMYADKITPAMERAIDETNRRRAKQIAYNTERGIDPQPLRKKINDIVAS 606

Query: 736 ILLEDAATTNISIDAQQLSLSKK---------KGKA------------------------ 762
           I  E+  T ++     + +   K          GKA                        
Sbjct: 607 IAREEVDTESLLGTGYRQAAEGKGAKTPVPALGGKATAEAGKAAKGAKSAKGKAASTPTD 666

Query: 763 --------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                    ++ +  +M  AA +L FE AAR+RDE+  +K
Sbjct: 667 RPGAELAQQIEEMTDRMRAAAADLQFEVAARLRDEVSEMK 706


>gi|15893793|ref|NP_347142.1| excinuclease ABC subunit B [Clostridium acetobutylicum ATCC 824]
 gi|20532291|sp|Q97LQ2|UVRB_CLOAB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|15023364|gb|AAK78482.1|AE007565_1 Excinuclease ABC subunit B (helicase subunit of the DNA excision
           repair complex) [Clostridium acetobutylicum ATCC 824]
 gi|325507916|gb|ADZ19552.1| excinuclease ABC subunit B [Clostridium acetobutylicum EA 2018]
          Length = 666

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/654 (53%), Positives = 474/654 (72%), Gaps = 2/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA ++ GI +  K Q LLGVTGSGKTFTMA +IE +Q+P +V+A
Sbjct: 4   FKINSAFKPTGDQPQAIASIVNGIKNNNKWQTLLGVTGSGKTFTMANIIEKVQKPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF++FFP ++VEYFVSYYDYYQPEAYV +TDTYIEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFRDFFPDSSVEYFVSYYDYYQPEAYVAQTDTYIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IVV+SVSCIYG+G+ E Y ++ + L+ G + ++ E+L  LV+ QY+R 
Sbjct: 124 SATSALFERRDVIVVASVSCIYGLGNPEEYKKLSISLRTGMNKDRDEILEKLVEMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I  +RGTF+V GD+I+IFP+     A RV +FG++I++I EF  LTG  I+ ++   I+
Sbjct: 184 EINFVRGTFKVKGDTIDIFPAGSTSSAIRVELFGDEIDKIKEFDVLTGNTIKTLKHTVIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T    +  A+K I+ EL+ RL EL  E +LLEAQRL+QR  +D+EM+   G C 
Sbjct: 244 PASHFATSSDKIEEAIKQIEIELEERLRELNSEDKLLEAQRLKQRTNFDIEMMREVGYCT 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR + GR  GEPP TL +Y P+D L+F+DESHVT+PQ+  MY GD  RK +L +Y
Sbjct: 304 GIENYSRIMDGRQKGEPPKTLIDYFPDDFLMFIDESHVTLPQVKAMYGGDRSRKNSLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F+E+       + VSATP ++EL+  +  I EQ+IRPTGL+DP +E
Sbjct: 364 GFRLPSAYDNRPLKFDEFEEKINQIVFVSATPSNYELDHSEN-IAEQVIRPTGLLDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+Y EI    Q G RIL+T LTK+MAEDLT+YL +  I+  YMHS++ TLE
Sbjct: 423 VRPTKGQIDDLYSEIKNTIQNGFRILVTTLTKKMAEDLTDYLKDLGIKTTYMHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II+D+R G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RMKIIKDVRTGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  S+VI+Y D IT ++  AI ET RRR+ Q+E+N+K+ I P ++K+ + +VI    + +
Sbjct: 543 NSESRVIMYGDKITDAMGKAISETKRRRKIQIEYNEKNGIKPTTIKKAVRDVIGISEVAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             T   S+D + +    K     +K   K+M  AA  L FE+AA  RD++  LK
Sbjct: 603 GKTEYKSMD-EAVKADNKNIDKLIKEFEKEMKEAAKELQFEKAAYFRDKVNELK 655


>gi|295105229|emb|CBL02773.1| Excinuclease ABC subunit B [Faecalibacterium prausnitzii SL3/3]
          Length = 685

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/654 (53%), Positives = 464/654 (70%), Gaps = 7/654 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AIAQL++G+   ++ Q LLGVTGSGKTFTMA VI    RP +V+A
Sbjct: 6   FELVSNYAPTGDQPQAIAQLVEGVQRGDRCQTLLGVTGSGKTFTMANVIAQCNRPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF++FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++IDR+RH
Sbjct: 66  HNKTLAAQLCTEFRSFFPNNAVEYFVSYYDYYQPEAYIPSTDTYIEKDSAINDEIDRLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +G    Y  M++ L+ G  +E+ EL   LV  QY+R 
Sbjct: 126 SATAALSERRDVIIVASVSCIYSLGDPIDYRSMVISLRPGMQMERDELCKKLVTLQYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  +R  FRV GD+++I+ +++ ++A RV  FG++I+ I+EF PLTG K   V+ + I+
Sbjct: 186 DVNFVRNKFRVHGDTVDIYLAYMSELAIRVEFFGDEIDRITEFNPLTGSKQNVVKHVAIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+        A++ I+ E   ++ +   EG+L+EAQR+ QR  YD+EML   G C+
Sbjct: 246 PASHYIVSAEKKAAALEKIRAECDAQVKQFTAEGKLIEAQRIAQRTNYDIEMLNEVGICK 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  L+GR PG  P TL +Y PED LLFVDESHVT+PQ+  MY GD+ RK TL EY
Sbjct: 306 GIENYSAVLSGRAPGSMPTTLLDYFPEDFLLFVDESHVTLPQVRAMYGGDYARKKTLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE        I VSATPG +E       + +Q+IRPTGL+DP + 
Sbjct: 366 GFRLPSAFDNRPLKFEEVESKLNQMIFVSATPGEYERRNSSQ-VAQQVIRPTGLLDPVIS 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV D+  EIN   Q+  R+L+T LTK+MAEDLT+YL E+ I+V+YMH EV T E
Sbjct: 425 VRPVEGQVVDLLGEINARIQRQERVLVTTLTKKMAEDLTDYLTEQGIKVKYMHHEVDTFE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII+DLRLG  DV+VGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 485 RMEIIKDLRLGSIDVVVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S++ AI ET RRR  Q+ +N++H I P+++   +  + D I + D
Sbjct: 545 NAEGMVIMYADVVTDSMECAITETERRRAIQMAYNEEHGIVPKTI---VKAIADSIEISD 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A  N   + ++  + K + +A ++ L ++M  AA  L FE AA +RD+I RL+
Sbjct: 602 KA-ENAKRNTRR--MGKMEREAAIERLTREMKEAAKLLEFEHAAFLRDQIDRLR 652


>gi|310778323|ref|YP_003966656.1| excinuclease ABC, B subunit [Ilyobacter polytropus DSM 2926]
 gi|309747646|gb|ADO82308.1| excinuclease ABC, B subunit [Ilyobacter polytropus DSM 2926]
          Length = 661

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/658 (52%), Positives = 488/658 (74%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI ++ + I    K Q+LLGVTGSGKTFT+A +I+   RPAI+MA
Sbjct: 2   FKLHSNYKPTGDQPEAIKKISENIKENVKDQVLLGVTGSGKTFTVANIIKDTGRPAIIMA 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSE+K+FFP NAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++ID++R+
Sbjct: 62  PNKTLAAQLYSEYKSFFPENAVEYFVSYYDYYQPEAYIPSTDTFIEKDSSINDEIDKLRN 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +L+ R D I+V+SVS IYG+GS E+Y +M + + +   +E+K+ L  LV  +Y+R 
Sbjct: 122 AATAALINRRDVIIVASVSAIYGLGSPETYKKMTIPIDLKTGIERKKFLEKLVSLRYERN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIKI 379
           DI   RG FR+ GD ++I+PS++E   +R+  +G+D+E ISE   LTG+K+R+ +E I I
Sbjct: 182 DIAFERGKFRIKGDVVDIYPSYME-TGYRLEFWGDDLESISEINTLTGKKVRSGLERISI 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
              +HYVT    +   ++ IKE+LK+++ + E EG+LLEAQR++QR  YDLEM+   G C
Sbjct: 241 MPATHYVTEENEIERIIEDIKEDLKIQIKKFESEGKLLEAQRIKQRTEYDLEMIREVGYC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           + IENYSRYL G+ PGE P TL EY P+D L+F+DESH+ +PQI GMY+GD  RK TL  
Sbjct: 301 KGIENYSRYLAGKEPGESPHTLLEYFPKDFLIFIDESHIAVPQIRGMYKGDRSRKETLVA 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
            GFRLPS +DNRPLRFEE+  +   T+ VSATPG +E++  +G + EQ++RPTG+++P +
Sbjct: 361 NGFRLPSALDNRPLRFEEFREIANQTVFVSATPGDYEMDVSKGQVAEQLVRPTGILEPLI 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R    QV+D+ +E+ + +++  R+L+T LTK+MAE+LTEY     ++ +YMHS++ TL
Sbjct: 421 DVRPTANQVDDLLEEVRIRSEKKQRVLVTTLTKKMAEELTEYYIGFGVKAKYMHSDIDTL 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIR LR G+FDVLVGINLLREGLDIPE  LVA+L+ADKEGFLRS+ SLIQT+GRAA
Sbjct: 481 ERIEIIRGLRRGEFDVLVGINLLREGLDIPEVSLVAVLEADKEGFLRSRRSLIQTMGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  KVILY D +T S++ AI+ET RRR+ Q E+NK +NI+P++V   I E+ + +L  
Sbjct: 541 RNIEGKVILYGDVMTGSMKEAIEETKRRRKVQKEYNKTYNIDPKTV---IREISEEVLNF 597

Query: 740 DAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           D      S + +++     SKK  +  +  L+K++ + ++ L+FE+A   RDE+ +L+
Sbjct: 598 DYGVDIDSYEKEKVKRVFTSKKDIEKEIGKLKKEIKILSEELDFEKAIIKRDEMIKLQ 655


>gi|227501808|ref|ZP_03931857.1| excision endonuclease subunit B [Corynebacterium accolens ATCC
           49725]
 gi|227077833|gb|EEI15796.1| excision endonuclease subunit B [Corynebacterium accolens ATCC
           49725]
          Length = 697

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/660 (53%), Positives = 475/660 (71%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P+GDQPAAI +L + ++  E+  +L+G TG+GK+ T A +IE  QRP +VMA
Sbjct: 28  FQVVSDYEPAGDQPAAIKELDERLNRDERDVVLMGATGTGKSATAAWLIEKQQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH
Sbjct: 88  PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT  LL R D +VVSSVSCIYG+G+ +SY    V + + + +++   L  LV  QY+R 
Sbjct: 148 SATSGLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVIIAVDEELDRDRFLRLLVDIQYERN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+G  RGTFRV GD+++I P++ E+ A R+  FG+DI+ +   +P+TG  I  V+ ++I+
Sbjct: 208 DVGFTRGTFRVKGDTVDIIPAY-EERAVRIEFFGDDIDSLYYIHPVTGDVIEQVDEVRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  IKEEL  RL +LE  G+LLEAQRL  R  YDLEM+E  G C 
Sbjct: 267 PATHYVAGPERMEKAVADIKEELAERLEDLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GMY GD  RK  L E+
Sbjct: 327 GIENYSRHVDGRPAGSAPATLLDYFPEDFLTIIDESHVTVPQIGGMYEGDMSRKRNLVEF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+      T+ +SATPG +E+    G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSAVDNRPLTFDEFEERVGQTVYMSATPGDFEMTSSGGEFVEQVIRPTGLVDPKVT 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ DE+        R+L+T LTKRMAEDLT+YL E+ I+VRY+HS++ TL+
Sbjct: 447 VKPTKGQIDDLIDEVRGRIASKERVLVTTLTKRMAEDLTDYLLEQGIKVRYLHSDIDTLQ 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 507 RVELLRQLRQGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           NV+ +VI+YAD IT S+Q AIDET RRREKQ+ +NK+H ++PQ +++KI +++D +    
Sbjct: 567 NVSGEVIMYADKITDSMQEAIDETERRREKQIAYNKEHGVDPQPLRKKIADILDQVYENN 626

Query: 738 LEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            E+AA ++ S   ++L   S++  + +A +  L+ QM  AA  L FE A R+RDEI  LK
Sbjct: 627 GEEAAESDPSAVVEKLDVSSMATDEVEALINDLQAQMGAAARELKFELAGRLRDEIADLK 686


>gi|300173722|ref|YP_003772888.1| excinuclease ABC subunit B [Leuconostoc gasicomitatum LMG 18811]
 gi|299888101|emb|CBL92069.1| excinuclease ABC, B subunit [Leuconostoc gasicomitatum LMG 18811]
          Length = 668

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/660 (51%), Positives = 479/660 (72%), Gaps = 8/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI+QL+KGI++  K Q+LLG TG+GKTFT++ V++ +++P +V++
Sbjct: 10  FEVVSQYQPTGDQPQAISQLVKGINAGVKEQILLGATGTGKTFTISNVVKTVRKPTLVLS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S++N++ID++R+
Sbjct: 70  HNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNDEIDQLRN 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D IVV+SVS I+G+G    Y + ++ L++G+   + +L+  L+  Q+ R 
Sbjct: 130 SATSSLLSRKDVIVVASVSSIFGLGDPHQYEEHVINLRVGNEYGRDQLMRDLIDVQFTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  +++A RV  FG++I+ I +   LTG+ +   + + IY
Sbjct: 190 DIDFHRGTFRVRGDVMEIFPASEDELALRVEFFGDEIDRIRDINSLTGETLAERDFVSIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T    ++TA+  IK+E+  ++   E EG+L+EAQR++QR  YDL MLE  G   
Sbjct: 250 PAKHFMTDDDQMSTALAGIKQEMTEQVSRFETEGKLIEAQRIKQRTEYDLAMLEEMGFVG 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GRNPGEPP TL ++ P+D L+  DESHVT+PQI GMY GD  RK TL  Y
Sbjct: 310 GIENYSRWMDGRNPGEPPFTLLDFFPDDFLIVADESHVTMPQIRGMYNGDRARKETLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+  E+       I +SATPG +ELE+     + +QIIRPTGL+DP +
Sbjct: 370 GFRLPSALDNRPLKLPEFEKHVNQIIYMSATPGDYELERVTDNHVAQQIIRPTGLLDPEI 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EIN  +++  R+ +T LTKRMAEDLT+YL    I+V Y+HS++KTL
Sbjct: 430 EVRPVMGQIDDLVGEINARSEKNERVFITTLTKRMAEDLTDYLKNVGIKVAYLHSDIKTL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EI+RDLRLGK+DVL+GINLLREG+D+PE  LVAILDADKEGFLR+  SLIQTIGRAA
Sbjct: 490 ERTEILRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNPRSLIQTIGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILL 738
           RN N  VI+YAD +T+S+Q AIDET RRRE Q+++N ++ I P ++K++I ++I    + 
Sbjct: 550 RNANGHVIMYADKVTRSMQEAIDETARRREVQMQYNAENGITPTTIKKEIRDLISVRSVS 609

Query: 739 EDAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            D  TT   ID  Q++   L + + K  + ++  QM  AA +L+FEEAA++RD +  LK+
Sbjct: 610 TDGKTT---IDLTQVAFKDLPQDEQKNIIANMEGQMKAAAKSLDFEEAAQLRDSVMTLKA 666


>gi|255657365|ref|ZP_05402774.1| excinuclease ABC subunit B [Clostridium difficile QCD-23m63]
          Length = 656

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/655 (53%), Positives = 481/655 (73%), Gaps = 7/655 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++D+ P+GDQP AI  ++  I+  EK   LLGVTGSGKTFTMA +I+ +++P ++MA
Sbjct: 3   FKIKSDFKPTGDQPEAIKSIVDSINRNEKFSTLLGVTGSGKTFTMANIIQQVKKPTLIMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV  +DTYIEK++SIN++ID++RH
Sbjct: 63  HNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT S+LER D I++SSVSCIYG+G  + Y ++++ ++ G   ++ +++  L++ QY+R 
Sbjct: 123 SATASILERRDTIIISSVSCIYGLGDPKDYKELMLSIRPGMQRDRDDVIKRLIEIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++ A R+  FG++++ I+E   +TG+ +     + I+
Sbjct: 183 DINFTRGTFRVRGDILEIFPASNDEKAIRIEFFGDEVDRITEIDYVTGKIVGTRNHVVIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    +  A+  I++EL+ ++   ++  RLLEAQR+EQR  YD+EML+  G CQ
Sbjct: 243 PASHYVTTPERIEKAIIEIEDELQEQIKFFKENDRLLEAQRIEQRTKYDIEMLKEIGFCQ 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++TGR+ GE P TL ++ P+D L+ VDE+HVTIPQ+ GMY GD  RK +L E 
Sbjct: 303 GIENYSRHITGRSEGERPYTLMDFFPDDYLIIVDEAHVTIPQVRGMYAGDRSRKTSLIEN 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       + VSATPG +E++  +  I EQIIRPTGL+DP VE
Sbjct: 363 GFRLPSALDNRPLNFQEFEGNINQMLFVSATPGPYEIQHSE-TIAEQIIRPTGLLDPIVE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT YL E  I+V+Y+HS++ TLE
Sbjct: 422 VRPINNQIDDLVGEITKTIEKNERVLITTLTKKMSEDLTNYLKEIGIKVKYLHSDIVTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLGKFDVLVGINLLREGLDIPE  L+AILDADKEGFLRS+T+LIQTIGRAAR
Sbjct: 482 RTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETALIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N N +VI+YAD IT S+Q AIDET RRR+ Q  +N++HNI P+++++ I + I+   + E
Sbjct: 542 NENGRVIMYADRITDSMQNAIDETKRRRDIQNLYNEEHNITPKTIQKNIRDSIEATKVAE 601

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +     IS D       K + +A++  L+ +M  AA NL FE AA +RD++K+L+
Sbjct: 602 EEVVYGIS-DTD----DKDEIRANIDKLKSEMMEAAQNLQFERAAELRDKVKQLE 651


>gi|289435750|ref|YP_003465622.1| excinuclease ABC, B subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171994|emb|CBH28540.1| excinuclease ABC, B subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|313636365|gb|EFS02146.1| excinuclease ABC subunit B [Listeria seeligeri FSL S4-171]
          Length = 658

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/656 (54%), Positives = 470/656 (71%), Gaps = 5/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI QL+ G+    K Q LLG TG+GKTFT++ VI+ + +P +VMA
Sbjct: 5   FELVSKYSPQGDQPRAIEQLVSGLRKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS   Y +M+V L++G  + + +LL  LV  QY R 
Sbjct: 125 SATASLFERRDVIIIASVSCIYGLGSPVEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ I   E + I+
Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCMRVEFFGDEIERIREVDALTGEIIGEREHVSIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  IK EL+ RL  L  + +LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 245 PASHFVTRPDIMKKAIVNIKAELEERLKVLRADNKLLEAQRLEQRTNYDLEMMEEMGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y P+D  + +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQIRGMFNGDQARKQMLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + +SATPG +ELE+   +I EQIIRPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEKNPDVI-EQIIRPTGLLDPIVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+ DEIN   ++  R+L+T LTK+M+EDLT YL E  ++V+Y+HSEVKTLE
Sbjct: 424 IRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG +DV+VGINLLREG+D+PE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P ++K++I  +I       
Sbjct: 544 NENGRVIMYADKMTDSMRNSISETERRRKIQIEYNEKHGITPMTIKKEIRGIIAAT---S 600

Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA    +I    LS +SKK+    ++ +  +M  AA  L+FE AA +RD +  +K+
Sbjct: 601 AADEREAIKQHDLSKMSKKERDVFIEGMEHEMKEAAKALDFERAAELRDALLEIKA 656


>gi|255327552|ref|ZP_05368619.1| excinuclease ABC subunit B [Rothia mucilaginosa ATCC 25296]
 gi|255295446|gb|EET74796.1| excinuclease ABC subunit B [Rothia mucilaginosa ATCC 25296]
          Length = 722

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/699 (50%), Positives = 480/699 (68%), Gaps = 47/699 (6%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA+L + + + EK  +L+G TG+GK+ T A +IEA+QRP +V+ 
Sbjct: 14  FEVVSPFQPAGDQPKAIAELTERVQNGEKDIVLMGATGTGKSATAAWLIEAVQRPTLVLV 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E +   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+RH
Sbjct: 74  QNKTLAAQLANELRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV++VSCIYG+G+ E Y + +V L+ G+ +++ ELL   V  QY R 
Sbjct: 134 SATNSLLTRRDVVVVATVSCIYGLGTPEEYIEQMVTLRRGEEIDRDELLRQFVAMQYARN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E+ A RV  FG++IE I   +PLTG+ IR  E + ++
Sbjct: 194 DMDFHRGTFRVRGDTVEIIPMY-EENAIRVEFFGDEIEAIYTLHPLTGEVIREEEEMYVF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I++EL+ RL  LE +G+LLEAQRL  R TYDLEM+E  G C 
Sbjct: 253 PASHYVAGPERMAKAITSIEDELRERLQTLESQGKLLEAQRLRMRTTYDLEMMEQMGFCN 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG  P  L +Y P+D LL +DESHVT+PQ+  MY GD  RK TL E+
Sbjct: 313 GIENYSRHIDGRAPGSAPNCLLDYFPDDFLLIIDESHVTVPQVGAMYEGDMSRKRTLVEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++EE+      TI +SATPG +EL Q  G  VEQIIRPTGL+DP + 
Sbjct: 373 GFRLPSAMDNRPLKWEEFLERIGQTIYLSATPGKYELSQADGY-VEQIIRPTGLIDPEIV 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ +EI +  ++  R+L+T LTKRMAEDLTEYL +  ++V+Y+HS+V TL 
Sbjct: 432 VKPTKGQIDDLLEEIRVRVERDERVLVTTLTKRMAEDLTEYLLQHGVKVQYLHSDVDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 492 RVELLRELRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+++AIDET RRRE Q  +N+ H I+PQ +++KI ++ D +  E+
Sbjct: 552 NVSGQVHMYADKITDSMRVAIDETNRRREIQQAYNRAHGIDPQPLRKKIADITDVLAREE 611

Query: 741 AATTNI-------SIDAQQLSLSKKKGKAH------------------------------ 763
             T  +          A+ +S   K G A                               
Sbjct: 612 EDTRELLQQRKSGKKGARTVSAGAKTGSATSSKIATSTPESEELLARAEARVRADGLAAA 671

Query: 764 --------LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   ++ + +QM +AA+NL FE AAR+RDE+  LK
Sbjct: 672 PAEDLLDLIEQMNEQMRVAAENLQFELAARLRDELADLK 710


>gi|160943190|ref|ZP_02090426.1| hypothetical protein FAEPRAM212_00676 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445429|gb|EDP22432.1| hypothetical protein FAEPRAM212_00676 [Faecalibacterium prausnitzii
           M21/2]
          Length = 685

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/654 (53%), Positives = 464/654 (70%), Gaps = 7/654 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AIAQL++G+   ++ Q LLGVTGSGKTFTMA VI    RP +V+A
Sbjct: 6   FELVSNYAPTGDQPQAIAQLVEGVQRGDRCQTLLGVTGSGKTFTMANVIAQCNRPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF++FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++IDR+RH
Sbjct: 66  HNKTLAAQLCTEFRSFFPNNAVEYFVSYYDYYQPEAYIPSTDTYIEKDSAINDEIDRLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +G    Y  M++ L+ G  +E+ EL   LV  QY+R 
Sbjct: 126 SATAALSERRDVIIVASVSCIYSLGDPIDYRSMVISLRPGMQMERDELCKKLVTLQYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  +R  FRV GD+++I+ +++ ++A RV  FG++I+ I+EF PLTG K   V+ + I+
Sbjct: 186 DVNFVRNKFRVHGDTVDIYLAYMSELAIRVEFFGDEIDRITEFNPLTGSKQNVVKHVAIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+        A++ I+ E   ++ +   EG+L+EAQR+ QR  YD+EML   G C+
Sbjct: 246 PASHYIVSAEKKAAALEKIRAECDAQVKQFTAEGKLIEAQRIAQRTNYDIEMLNEVGICK 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  L+GR PG  P TL +Y PED LLFVDESHVT+PQ+  MY GD+ RK TL EY
Sbjct: 306 GIENYSAVLSGRAPGSMPTTLLDYFPEDFLLFVDESHVTLPQVRAMYGGDYARKKTLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE        I VSATPG +E       + +Q+IRPTGL+DP + 
Sbjct: 366 GFRLPSAFDNRPLKFEEVESKLNQMIFVSATPGEYERRNSSQ-VAQQVIRPTGLLDPVIS 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV D+  EIN   Q+  R+L+T LTK+MAEDLT+YL E+ I+V+YMH EV T E
Sbjct: 425 VRPVEGQVVDLLGEINARIQRQERVLVTTLTKKMAEDLTDYLTEQGIKVKYMHHEVDTFE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII+DLRLG  DV+VGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 485 RMEIIKDLRLGSIDVVVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S++ AI ET RRR  Q+ +N++H I P+++   +  + D I + D
Sbjct: 545 NAEGMVIMYADVVTDSMERAITETERRRAIQMAYNEEHGIVPKTI---VKAIADSIEISD 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A  N   + ++  + K + +A ++ L ++M  AA  L FE AA +RD+I RL+
Sbjct: 602 KA-ENAKRNTRR--MGKMEREAAIERLTREMKEAAKLLEFEHAAFLRDQIDRLR 652


>gi|223937920|ref|ZP_03629819.1| excinuclease ABC, B subunit [bacterium Ellin514]
 gi|223893321|gb|EEF59783.1| excinuclease ABC, B subunit [bacterium Ellin514]
          Length = 682

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/661 (53%), Positives = 465/661 (70%), Gaps = 15/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AIA+L +G+ S  K Q LLGVTGSGKTFT+A VI+ + +P +V++
Sbjct: 2   FDLVSSYPPAGDQPQAIAKLTEGLLSGAKHQTLLGVTGSGKTFTVANVIKNINKPTLVIS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK+FFP+NAVEYFVSY+DYYQPEAY+PRTDT++EK+SS+NE+I+RMR 
Sbjct: 62  HNKTLAAQLYAEFKSFFPNNAVEYFVSYFDYYQPEAYIPRTDTFVEKDSSVNEEIERMRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S   SL  R D +VV+SVSCIYGIGS E Y  +I+ + +G  + +++ L+ LV  QY R 
Sbjct: 122 STMSSLFSRQDVVVVASVSCIYGIGSKEDYEALIIPICVGQQITREQFLNRLVDLQYTRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD++E+ P+  ED   R+  FG +IE I+ F PLTG K+  + T  +Y
Sbjct: 182 DIEFTRGQFRVRGDTVELCPAGRED-GLRIEFFGEEIERITRFEPLTGHKLETLNTAVVY 240

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               +VT    +  A+  I+EEL  R+   EK G+LLEAQR++QR  YDLEM+E  G C 
Sbjct: 241 PAKQFVTTADKMKPAILSIREELGDRIAWFEKHGKLLEAQRIKQRTEYDLEMMEEMGFCS 300

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R++ GR PG  P TLF++ P+D LL +DESH TIPQI GMY GD  RK  L EY
Sbjct: 301 GIENYTRHINGRAPGSRPTTLFDFFPKDHLLVIDESHATIPQIGGMYAGDRSRKTVLVEY 360

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+  ++  T+ VSATP   E+E  QG + EQIIRPTGLVDP + 
Sbjct: 361 GFRLPSALDNRPLNFDEFQHMQGPTLYVSATPSPREIEWSQGRVAEQIIRPTGLVDPTIT 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ +E         RIL+T LTKR AE+LT+YL    I VRY+HSE+  +E
Sbjct: 421 VKPLQGQIDDLIEEARKRVDSKERILVTTLTKRTAEELTDYLRNIGINVRYLHSEIDAIE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+R LR G+FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS TSLIQT GRAAR
Sbjct: 481 RVEILRGLRKGEFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSVTSLIQTAGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++N +VILYAD +T+SIQ  +  +  RRE+QL +NK+HNI P+SV   +         E+
Sbjct: 541 HLNGEVILYADVMTQSIQKFLAVSKFRRERQLAYNKEHNITPKSVSRAV---------EE 591

Query: 741 AATTNISIDAQQLSLSKKKG-----KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + +TN     Q  S+ K+ G        +K L ++M  AA+NL FE+AA +RD+I+ LK 
Sbjct: 592 SLSTNKEFKDQANSMLKESGVDFDVTETIKELEEEMLAAANNLEFEKAALMRDQIRELKR 651

Query: 796 S 796
           S
Sbjct: 652 S 652


>gi|229014325|ref|ZP_04171444.1| UvrABC system protein B [Bacillus mycoides DSM 2048]
 gi|229063814|ref|ZP_04200118.1| UvrABC system protein B [Bacillus cereus AH603]
 gi|229135970|ref|ZP_04264731.1| UvrABC system protein B [Bacillus cereus BDRD-ST196]
 gi|229169869|ref|ZP_04297565.1| UvrABC system protein B [Bacillus cereus AH621]
 gi|228613583|gb|EEK70712.1| UvrABC system protein B [Bacillus cereus AH621]
 gi|228647512|gb|EEL03586.1| UvrABC system protein B [Bacillus cereus BDRD-ST196]
 gi|228716451|gb|EEL68155.1| UvrABC system protein B [Bacillus cereus AH603]
 gi|228746925|gb|EEL96809.1| UvrABC system protein B [Bacillus mycoides DSM 2048]
          Length = 658

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/655 (54%), Positives = 476/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISEYSPQGDQPGAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+N+VEYFVSYYDYYQPEAYVP TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNSVEYFVSYYDYYQPEAYVPHTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSSLFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKLKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ    I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPKAI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI+    +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIHDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N+KH I P+++++ + +VI       
Sbjct: 544 NANGRVIMYADRITRSMGIAIEETQRRRSIQEAYNEKHGITPKTIQKGVRDVIRATTA-- 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A  T I        ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 602 AEDTEIYEATPAKKMTKKERENTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|258645489|ref|ZP_05732958.1| excinuclease ABC subunit B [Dialister invisus DSM 15470]
 gi|260402842|gb|EEW96389.1| excinuclease ABC subunit B [Dialister invisus DSM 15470]
          Length = 702

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/657 (52%), Positives = 468/657 (71%), Gaps = 1/657 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F++   + P GDQP A+  L  G+      Q+LLG TG+GKTFTMAKVIE MQRP +
Sbjct: 14  MTPFRLAAPFQPMGDQPEAVKSLTDGLRDGHWAQVLLGATGTGKTFTMAKVIEEMQRPTL 73

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++PNK LAAQ  SEFK+FFP NAV YFVSYYDY+QPE+Y+P+TDTYIEK+SS NE+IDR
Sbjct: 74  IISPNKTLAAQTASEFKDFFPDNAVYYFVSYYDYFQPESYIPQTDTYIEKDSSRNEEIDR 133

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G  E YS + + L+ G+ + + ++L  LV  QY
Sbjct: 134 LRHSATMALFERRDVIIVASVSCIYGLGDPEDYSTLGLSLRPGEEITRDQILLRLVDMQY 193

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD+I++FP+   + A R+ MFG++IE + EF  LTG  +   + I
Sbjct: 194 LRNDLNFTRDTFRVRGDTIDVFPASSNNTAVRIEMFGDEIESLYEFDVLTGATVAERDHI 253

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYVT    L  A+  IK EL+ RL EL ++ R+LEAQRL QR  YDLEM++  G
Sbjct: 254 GIFPASHYVTTSGKLKNAIAKIKVELEERLKELREQDRILEAQRLMQRTNYDLEMMQEVG 313

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+++ R PG+PP TL +Y P+D ++ +DESH+T+PQ+  MY GD  RK TL
Sbjct: 314 YCSGIENYSRHMSDRRPGDPPYTLLDYFPDDYMIMIDESHITVPQLHAMYNGDQSRKHTL 373

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL FEE+       I VSATPG +E+   Q  + EQIIRPTGL+DP
Sbjct: 374 VDYGFRLPSALDNRPLTFEEFTDRINQIIYVSATPGRYEM-SVQTNMAEQIIRPTGLLDP 432

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++D+  EI+       R+L+T LTK+MAEDLT++L E  ++VRY+HS+V 
Sbjct: 433 SVEVRPIEGQMDDLLGEIHKREAVNERVLITTLTKKMAEDLTDFLNEAGVKVRYLHSDVA 492

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER EIIRDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR++TS+IQ IGR
Sbjct: 493 TIERAEIIRDLRAGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRNETSMIQVIGR 552

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN +  VI+YAD +TKS++ AI+ET RRR+ Q  +N KH+I P+++++K+ ++I+   
Sbjct: 553 AARNAHGHVIMYADRMTKSMKYAIEETNRRRKIQEAYNTKHHIVPKTIRKKVKDLIELTK 612

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + ++  T  S D    +LS ++    +K+  + M  AA  + FEEAA  RD +  L+
Sbjct: 613 ISESTETYGSGDQSVENLSDEELYNRMKNSERNMKRAAKAMEFEEAALWRDRLAGLR 669


>gi|168705485|ref|ZP_02737762.1| excinuclease ABC subunit B [Gemmata obscuriglobus UQM 2246]
          Length = 694

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/665 (52%), Positives = 477/665 (71%), Gaps = 22/665 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P+GDQP AI QL +G  + +KVQ+LLG TG+GKTFT + VI    +P +V+A
Sbjct: 5   FQITSDYAPAGDQPKAIEQLTQGFANGKKVQVLLGATGTGKTFTASNVIARANKPTLVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FF +NAV YFVSYYDYYQPEAY+P+ D YIEK+SSINE IDR+R 
Sbjct: 65  HNKTLAAQLYKEFKGFFKNNAVHYFVSYYDYYQPEAYIPQRDIYIEKDSSINENIDRLRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +L+ R D I+V+SVSCIYG+GS   Y +M+V ++ G+++++  +L  L+  QYKR 
Sbjct: 125 AATSALVSREDVIIVASVSCIYGLGSPSDYKRMMVYVRKGETLDRDNMLLRLIDIQYKRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGT RV GD+I+++P+  E+ A+R+ +FG+D+E +S  +P++G+ IR ++ + IY
Sbjct: 185 DVAFERGTVRVRGDTIDVWPAS-EEFAYRIELFGDDVETLSVIHPVSGETIRPLDDLYIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP   +  A+K I+EEL  RL + + EG+LLE +RL+ R  YDL+ML   G C 
Sbjct: 244 PAKHFVTPEERVQAAIKGIEEELNQRLEQFKTEGKLLEMERLKARCRYDLDMLREVGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+ +GR PGE P TL ++ PED LL VDESHVT+PQ+ GMY GD  RK TL  +
Sbjct: 304 GIENYARWFSGRAPGEAPYTLIDFFPEDFLLVVDESHVTLPQVRGMYFGDRSRKETLVAH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       + +SATPG +ELE+  G +VEQ+IRPTGLVDP + 
Sbjct: 364 GFRLPSALDNRPLKFDEFEKRMTQCLCLSATPGPYELEKVGGEVVEQVIRPTGLVDPVIH 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ AR QV+D+  E+   A +G R L+TVLTKRMAEDLT Y  +  +R +++HSE+  +E
Sbjct: 424 VKPARGQVKDLEAEVRTRAAKGERALVTVLTKRMAEDLTTYFRDAGMRCKWLHSELDAIE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI+++R+LR G+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SLIQT+GRAAR
Sbjct: 484 RIQVLRELREGQFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSDKSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN++VILYAD +T S+  A++ET RRRE QL +N +H I PQ+VK  I   I     ED
Sbjct: 544 NVNAEVILYADVVTDSMSRAMNETNRRREIQLAYNAEHGITPQTVKTAIKNEI-----ED 598

Query: 741 AATTNISIDAQQLSLSKKKGKA----------HLKSLRKQMHLAADNLNFEEAARIRDEI 790
                  I+A Q++ +   G +          +++SL ++M  AA  L+FE A  +RD+I
Sbjct: 599 ------EIEAHQMAQAAATGSSAAAEDYVTVEYVQSLYEEMLEAAKTLDFERAQALRDQI 652

Query: 791 KRLKS 795
            RL++
Sbjct: 653 VRLET 657


>gi|33862344|ref|NP_893904.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9313]
 gi|81834846|sp|Q7TV80|UVRB_PROMM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|33640457|emb|CAE20246.1| excinuclease ABC, subunit B [Prochlorococcus marinus str. MIT 9313]
          Length = 679

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/670 (53%), Positives = 470/670 (70%), Gaps = 17/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           + ++  Y P GDQP AIA+L++G++  ++ Q LLG TG+GKTFT+A +I    RPA+V+A
Sbjct: 4   YHLKAPYSPKGDQPTAIARLVEGVNQGQRYQTLLGATGTGKTFTIANLIAQTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF+ FFP N+VEYF+SYYDYYQPEAYVP +DTYI K SSINE+ID +RH
Sbjct: 64  HNKTLAAQLCNEFREFFPDNSVEYFISYYDYYQPEAYVPVSDTYIAKTSSINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ERND IVV+S+SCIYG+G    Y +  V+ K+G+++  +  L  LV+ QY R 
Sbjct: 124 SATRSLFERNDVIVVASISCIYGLGIPSEYLKAAVKFKVGETLNIRSALRELVENQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI I RG FRV GD +EI P++ ED   R+ +FG+++E I    P TG+ ++++E I IY
Sbjct: 184 DIDITRGRFRVRGDVLEIGPAY-EDRLVRIELFGDEVEAIRYLDPTTGEILQSLEAINIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  LN A++ I++EL+ RL  L ++G+LLEAQRLEQR TYDLEML   G C 
Sbjct: 243 PAKHFVTPKERLNVAVQAIRDELRGRLQFLNEQGKLLEAQRLEQRTTYDLEMLREVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L GR+ G PP  L +Y PED LL VDESHVT  Q+  MY GD  RK  L E+
Sbjct: 303 GVENYARHLAGRSAGTPPECLIDYFPEDWLLVVDESHVTCSQLKAMYNGDQARKKVLIEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+      T+ VSATPG WEL+Q  G + EQ+IRPTG++DP VE
Sbjct: 363 GFRLPSAADNRPLKSEEFWSKARQTVFVSATPGDWELKQSDGHLAEQVIRPTGVLDPLVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + QV+D+  EI + A++  R+L+T LTKRMAEDLT+YL E ++RVRY+HSE+ ++E
Sbjct: 423 VRPTQGQVDDLLAEIRIRAEKQERVLITTLTKRMAEDLTDYLAENDVRVRYLHSEIHSIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII+DLRLG++DVLVG+NLLREGLD+PE  LV ILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           +V+   +LYAD +T S+  AI ET RRRE Q  +N+ + I P+   ++    I   L   
Sbjct: 543 HVDGMALLYADNLTDSMSRAISETERRREIQKAYNELNGIVPRPAGKRASNSILSFLELS 602

Query: 738 ------LEDAATTNI---SIDA----QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
                  +DA    I   ++DA    Q   L+       +  L  +M  AA NLNFEEAA
Sbjct: 603 RRLQTDGKDADLVQITGRAVDALDSDQDAGLALDALPELIDQLETKMKEAAKNLNFEEAA 662

Query: 785 RIRDEIKRLK 794
            +RD IK+ +
Sbjct: 663 SLRDRIKKFR 672


>gi|326382689|ref|ZP_08204380.1| excinuclease ABC subunit B [Gordonia neofelifaecis NRRL B-59395]
 gi|326198808|gb|EGD55991.1| excinuclease ABC subunit B [Gordonia neofelifaecis NRRL B-59395]
          Length = 717

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/688 (50%), Positives = 481/688 (69%), Gaps = 28/688 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AIA L + +++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 28  FEVVSEYEPAGDQPTAIADLERRLNTGERDIVLLGATGTGKSATTAWLIEKVQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 88  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT SLL R D +VV+SVSCIYG+G+ +SY    V+L +G ++++  LL  LV  QY R 
Sbjct: 148 AATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVELSVGQTIDRDALLRLLVDVQYTRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD++EI PS+ E++A R+  FG++++ +   +PLTG  +R V++++I+
Sbjct: 208 DVSFTRGGFRVRGDTVEIIPSY-EELAVRIEFFGDEVDSLYYLHPLTGDVVRKVDSLRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  AM+ I++EL+ RL +LE +G+LLEAQRL  R TYDLEM+   G C 
Sbjct: 267 PATHYVAGPERMAVAMESIEKELEERLADLEAKGKLLEAQRLRMRTTYDLEMMRQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG  P TL +Y P+D LL +DESHVT+PQI  MY GD  RK  L EY
Sbjct: 327 GIENYSRHIDGRGPGTAPATLLDYFPDDFLLVIDESHVTVPQIGAMYEGDMSRKRNLVEY 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL ++E+      T+ +SATPG++EL Q  G  VEQ+IRPTGL+DP + 
Sbjct: 387 GFRLPSAVDNRPLTWDEFVDRVGQTVYLSATPGAYELGQSGGEFVEQVIRPTGLLDPQIV 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI    ++  RIL+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 447 VKPTKGQIDDLVHEIRERTERDERILVTTLTKKMAEDLTDYLLELGIRVRYLHSEVDTLR 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 507 RVELLRQLRSGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+  AI+ET RRR KQ+ +N++  ++PQ +++KI +++D +  E 
Sbjct: 567 NVSGEVHMYADKITDSMANAIEETDRRRAKQIAYNEEKGVDPQPLRKKIADILDQVYAEA 626

Query: 741 AATTNISIDAQQLSLSKK-KGKAH------------------------LKSLRKQMHLAA 775
             +  I    +  S  ++ +G+                          ++ L  QM  AA
Sbjct: 627 DDSVEIGGSGRNASRGRRAQGEVSKVASSGVIENRDTSGMPRAELADLVQQLTDQMMNAA 686

Query: 776 DNLNFEEAARIRDEIKRLKSSPYFQGLD 803
            +L FE AAR+RDEI  LK     +G+D
Sbjct: 687 RDLQFELAARLRDEIADLKKE--LRGMD 712


>gi|229175835|ref|ZP_04303333.1| UvrABC system protein B [Bacillus cereus MM3]
 gi|228607568|gb|EEK64892.1| UvrABC system protein B [Bacillus cereus MM3]
          Length = 658

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 480/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLIDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEGKTNQVIYVSATPGPYELEQAPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +NK+H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNKEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  ++ A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 EPETYEAVPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|294501793|ref|YP_003565493.1| excinuclease ABC subunit B [Bacillus megaterium QM B1551]
 gi|295707143|ref|YP_003600218.1| excinuclease ABC subunit B [Bacillus megaterium DSM 319]
 gi|28971417|emb|CAD70605.1| excinuclease ABC, subunit B [Bacillus megaterium]
 gi|294351730|gb|ADE72059.1| excinuclease ABC, B subunit [Bacillus megaterium QM B1551]
 gi|294804802|gb|ADF41868.1| excinuclease ABC, B subunit [Bacillus megaterium DSM 319]
          Length = 659

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/657 (55%), Positives = 478/657 (72%), Gaps = 6/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +++KGI   ++ Q+LLG TG+GKTFTM+ VI+ + +P ++MA
Sbjct: 5   FELVSPYQPQGDQPKAIEKIVKGIKEGKQHQVLLGATGTGKTFTMSNVIKEINKPTLIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y +M+V L++G   E+ +LL +LV  QY+R 
Sbjct: 125 SATSSLFERKDVIIIASVSCIYGLGSPEEYKEMVVSLRVGMEKERNQLLRTLVDVQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP   ++   RV  FG++I+ I E   LTG+ I + E + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPVSRDEHCIRVEFFGDEIDRIREVDALTGEIIGDREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ +L +L++ G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRVAIQNIEKELEEQLEKLKEAGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL ++ PED LL VDESHVTIPQ+ GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDFFPEDFLLVVDESHVTIPQVRGMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       + VSATPG +ELE+   +I EQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFDEFEQHINQIVHVSATPGPYELEKAPDVI-EQIIRPTGLLDPNIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+   ++  R+L+T LTK+M+EDLT YL E  I+V+Y+HSEVKTLE
Sbjct: 424 VRPIEGQIDDLIGEIHDRIKRNERVLVTTLTKKMSEDLTNYLKEIGIKVQYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIR+LRLGK+DVLVGINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRELRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILLE 739
           N N  VI+YAD IT S+ +AI+ET RRR  Q  +N++H I P ++++++   I   ++ E
Sbjct: 544 NANGHVIMYADRITNSMDIAINETKRRRSIQEAYNEEHGITPTTIQKEVRGSIRATVVAE 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           D  T     +A       KK KA L + + ++M  AA  LNFE AA +RD I  LK+
Sbjct: 604 DTETYE---EAPAFDKLNKKEKAKLVEEMEQEMKEAAKALNFERAAELRDLILELKA 657


>gi|282862026|ref|ZP_06271089.1| excinuclease ABC, B subunit [Streptomyces sp. ACTE]
 gi|282563051|gb|EFB68590.1| excinuclease ABC, B subunit [Streptomyces sp. ACTE]
          Length = 712

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/699 (50%), Positives = 487/699 (69%), Gaps = 37/699 (5%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++   + +  F++ + Y PSGDQPAAIA+L + I + EK  +LLG TG+GK+ T A +IE
Sbjct: 4   VSQIERSVAPFEVVSPYQPSGDQPAAIAELDRRIRAGEKDVVLLGATGTGKSATTAWMIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 64  KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +VQLK+GD +++ +LL 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVQLKVGDEIDRDQLLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V+ QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ 
Sbjct: 184 RFVEIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I    ++ ++  SHYV     +  A+  I+ EL+ RL ELEK+G++LEAQRL  R TYD+
Sbjct: 243 ISEDSSLHVFPASHYVAGPERMEKAIGGIERELEQRLAELEKQGKMLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML   G+C  +ENYS +   R+PG  P TL +Y PED LL +DESHVT+PQI  MY GD
Sbjct: 303 EMLRQIGTCSGVENYSMHFDDRSPGTAPNTLLDYFPEDFLLVLDESHVTVPQIGAMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG +E+ +  G  VEQIIR
Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFLKRIDQTVYLSATPGKYEMSRGDG-YVEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+VR
Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADK+GFLRS TS
Sbjct: 482 YLHSDVDTLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD +T ++  AIDET RRREKQ+ +N +  ++PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADQVTPAMAQAIDETNRRREKQIAYNTERGVDPQPLRKKIN 601

Query: 731 EVIDPILLEDAATTNI----------------SIDAQQL----SLSKKKGKAH------- 763
           +++  I  E+  T  +                ++  + +    + +++K K         
Sbjct: 602 DIVASIAREEVDTEQLLGTGYRQTKGAKTPVPTLGGKTVPGGGATAREKAKGEPVVATDR 661

Query: 764 --------LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   ++ +  +M  AA +L FE AAR+RDE+  LK
Sbjct: 662 PAAELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELK 700


>gi|221633527|ref|YP_002522752.1| excinuclease ABC subunit B [Thermomicrobium roseum DSM 5159]
 gi|221157243|gb|ACM06370.1| excinuclease ABC, B subunit [Thermomicrobium roseum DSM 5159]
          Length = 668

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/660 (54%), Positives = 476/660 (72%), Gaps = 8/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ TD+ P+GDQP AI QL++G+    + Q LLG TG+GKTFTMA VI   QRP +V+A
Sbjct: 4   FELVTDFQPTGDQPQAIEQLVEGLQRGYRHQTLLGATGTGKTFTMACVIARWQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEKE+ IN++IDR+R 
Sbjct: 64  PNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYIPQTDTYIEKETEINDEIDRLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATR++  R D I+V+SVSCIYGIGS E + + I+ L+ G  V + ++L  LV  QY R 
Sbjct: 124 AATRAVRTRRDVIIVASVSCIYGIGSPEEWDKSILALRRGQVVRRDKILRHLVDLQYDRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ ++RGTFR  GD IE+FP++ E+ A R+ ++G+++E I EF PLTG+ +   E ++I+
Sbjct: 184 DMTLVRGTFRARGDLIEVFPAY-EEFAVRIELWGDEVERIVEFDPLTGEILATREVMEIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT    L  A++ I+ EL+ RL EL  +G+LLEAQRLEQR  YD+EML   G C 
Sbjct: 243 PAKHWVTSGERLEAAIRSIEAELEERLAELRAQGKLLEAQRLEQRTRYDIEMLREVGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPP TL +Y P+D L+F+DESH+ IPQ+ GMY GD  RK  L EY
Sbjct: 303 GIENYSRHLSGRKPGEPPWTLLDYFPDDYLMFIDESHLAIPQVRGMYHGDRSRKEILVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I VSATPG WE E  Q  IVEQ+IRPTG++DP + 
Sbjct: 363 GFRLPSARDNRPLTFEEFLERINQVIYVSATPGPWEREVSQQ-IVEQVIRPTGILDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI     +G R L+T LTK+MAEDL +YL E  IR  Y+HSE+ T+E
Sbjct: 422 VRPTKGQIDDLLHEIRQRVARGERALVTTLTKKMAEDLADYLKEIGIRTHYLHSEIDTIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS+++LIQ IGRAAR
Sbjct: 482 RVEILRDLRLGIYDVVVGINLLREGLDLPEVSLVAILDADKEGYLRSESALIQMIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738
           +VN  VI+YADTIT S+Q AI+ET RRR+ Q+ +N++H I P+S+ +++ ++ D I    
Sbjct: 542 HVNGHVIMYADTITSSMQKAIEETYRRRQIQMAYNQEHGIEPRSIVKQVRDLTDRIRQAA 601

Query: 739 EDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ A   ++           L+  +    ++ L +QM  AA  L FE+AA +RD+I  L+
Sbjct: 602 EERAPYEVAAPVPHAGAIGELAPDELARLIRDLERQMKEAAKQLEFEKAALLRDQIFELR 661


>gi|294668260|ref|ZP_06733365.1| hypothetical protein NEIELOOT_00171 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309779|gb|EFE51022.1| hypothetical protein NEIELOOT_00171 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 615

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/588 (57%), Positives = 443/588 (75%), Gaps = 1/588 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 11  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 71  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 131 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    ++
Sbjct: 191 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G C+
Sbjct: 251 PSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 311 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P TI VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 371 GFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T+E
Sbjct: 430 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           NVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K K
Sbjct: 550 NVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKNK 597


>gi|49481649|ref|YP_039154.1| excinuclease ABC subunit B [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|81828140|sp|Q6HBC2|UVRB_BACHK RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|49333205|gb|AAT63851.1| UvrABC system protein B (excinuclease ABC, subunit B) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 658

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|291549964|emb|CBL26226.1| excinuclease ABC, B subunit [Ruminococcus torques L2-14]
          Length = 661

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/654 (53%), Positives = 473/654 (72%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y+P+GDQP AI +L++G     + Q LLGVTGSGKTFTMA VI+ M +P +++A
Sbjct: 4   FELVSQYNPTGDQPQAIKELVEGFKEGNQCQTLLGVTGSGKTFTMANVIQQMNKPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID++R 
Sbjct: 64  HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDKLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ER D I+V+SVSCIYG+G+   Y  M+V L+ G   ++ E+++ L++ QY R 
Sbjct: 124 SATMSLMERRDVIIVASVSCIYGLGNPVDYQNMVVSLRPGMIKDRDEVMAKLIEIQYDRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EI P++  D A RV  FG++I+ ISE   LTG+    ++ + I+
Sbjct: 184 DMDFHRGTFRVRGDVLEIIPAYESDTAIRVEFFGDEIDRISEIDILTGEVKDELKHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  R  +  A+  I+EEL+ R+ E ++  +LLEAQR+ +R  +D+EML+ TG C 
Sbjct: 244 PASHYVVDRENIKRAVADIEEELEERVKEFKRNDKLLEAQRIAERTNFDIEMLKETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L G  PG+ P TL +Y P+D ++ +DESH TIPQI GMY GD  RK TL +Y
Sbjct: 304 GIENYSRHLAGLRPGQAPYTLIDYFPDDFIMMIDESHKTIPQIGGMYHGDQSRKQTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F+E+       + VSATPG +E +  + +  EQ+IRPTGL+DP VE
Sbjct: 364 GFRLPSAKDNRPLNFDEFESKINQVMFVSATPGEYE-KNHELLRAEQVIRPTGLLDPEVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N    +  ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ TLE
Sbjct: 423 VRPVEGQIDDLIGEVNKEISKKNKVLVTTLTKRMAEDLTDYMREVGIRVKYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT+S+QLAIDET RRRE Q+ +N++H I P+++++ + ++I   + + 
Sbjct: 543 NAEGHVIMYADKITESMQLAIDETQRRREIQMRYNEEHGITPKTIQKSVRDLIS--ISKK 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A   + ++    S+S+K+ +  +  L KQM  AA  LNFE AA +RD++  LK
Sbjct: 601 VAAEEMRLEKDPESMSQKELEKLIADLTKQMKKAAAELNFEAAAELRDKLVELK 654


>gi|318056345|ref|ZP_07975068.1| excinuclease ABC subunit B [Streptomyces sp. SA3_actG]
 gi|318075155|ref|ZP_07982487.1| excinuclease ABC subunit B [Streptomyces sp. SA3_actF]
          Length = 717

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/699 (50%), Positives = 480/699 (68%), Gaps = 42/699 (6%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           + +  F++ + Y PSGDQP AIA+L K +   EK  +LLG TG+GK+ T A +IE +QRP
Sbjct: 9   RTVAPFEVVSPYSPSGDQPTAIAELEKRVKGGEKDVVLLGATGTGKSATTAWMIERLQRP 68

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE++
Sbjct: 69  TLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEV 128

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           +R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V LK+GD +++ ELL   V  
Sbjct: 129 ERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGDELDRDELLRRFVDI 188

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ I + +
Sbjct: 189 QYTRNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSLLHPLTGEVISDDQ 247

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  SHY+     +  A+  I++EL++RL ELEK+G+LLEAQRL  R TYD+EML  
Sbjct: 248 QVYVFPASHYIAGPERMERAINGIEKELEVRLAELEKQGKLLEAQRLRMRTTYDIEMLRQ 307

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G+C  +ENYS +   R PG PP TL +Y PED LL +DESHVT+PQI  MY GD  RK 
Sbjct: 308 IGTCSGVENYSMHFDDREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKR 367

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL ++GFRLPS +DNRPL++EE+       + +SATPG++EL +  G  VEQIIRPTGLV
Sbjct: 368 TLVDHGFRLPSALDNRPLKWEEFQKRIGQAVYLSATPGNYELSRSDG-FVEQIIRPTGLV 426

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP + ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I VRY+HS+
Sbjct: 427 DPEIVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMAEDLTDYFLELGINVRYLHSD 486

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTI
Sbjct: 487 VDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTI 546

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+ +V +YAD IT +++ AIDET RRR KQ+ +N +  I+PQ +++KI +++  
Sbjct: 547 GRAARNVSGQVHMYADKITPAMERAIDETNRRRAKQIAYNTERGIDPQPLRKKINDIVAS 606

Query: 736 ILLEDAATTNISIDAQQLSLSKK---------KGKA------------------------ 762
           I  E+  T ++     + +   K          GKA                        
Sbjct: 607 IAREEVDTDSLLGTGYRQAKEGKGAKTPVPALGGKATAESGKAAKGKAKKGKAATAPTDQ 666

Query: 763 -------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   ++ +  +M  AA +L FE AAR+RDE+  +K
Sbjct: 667 PGAALAQQIEEMTDRMRAAAADLQFEVAARLRDEVSEMK 705


>gi|229087642|ref|ZP_04219771.1| UvrABC system protein B [Bacillus cereus Rock3-44]
 gi|228695683|gb|EEL48539.1| UvrABC system protein B [Bacillus cereus Rock3-44]
          Length = 658

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/655 (54%), Positives = 477/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI QL+ GI++ +K Q+LLG TG+GKTFT++ VI+ +++P +VMA
Sbjct: 5   FEIVSEYSPQGDQPRAIKQLVAGINNGKKHQVLLGATGTGKTFTISNVIKEVKKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ +++   R+  FG++I+ I E   LTG+ +   E + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASIDEHCIRIEFFGDEIDRIREVNALTGEVLAEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHVT+PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGSTPYTLIDYFPEDFLIVMDESHVTVPQVRAMYNGDKARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSAMDNRPLMFEEFEEKTNQVVYVSATPGPYELEHAPE-VVEQIIRPTGLLDPQID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YAD ITKS+ +A++ET RRREKQ  +N++H I P+++++++ +VI       
Sbjct: 544 NENGHVIMYADRITKSMGIAMEETKRRREKQEAYNEEHGITPKTIQKEVRDVIRATTA-- 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A  T +   A    ++KK+ +  +  +  +M  AA  L+FE AA +RD +  L++
Sbjct: 602 AEETEVYDAAPAKKMTKKEREKTIAKVEAEMKEAAKALDFERAAELRDLLLELQA 656


>gi|167771427|ref|ZP_02443480.1| hypothetical protein ANACOL_02793 [Anaerotruncus colihominis DSM
           17241]
 gi|167666067|gb|EDS10197.1| hypothetical protein ANACOL_02793 [Anaerotruncus colihominis DSM
           17241]
          Length = 663

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/656 (53%), Positives = 470/656 (71%), Gaps = 7/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI  L +GI +    Q LLGVTGSGKTFTMA +IE + RP +++A
Sbjct: 4   FKLVSPFKPTGDQPEAIEALTRGILAGAHEQTLLGVTGSGKTFTMANIIERVNRPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+S+IN++I+++RH
Sbjct: 64  HNKTLAAQLCSEFREFFPENAVEYFVSYYDYYQPEAYIAHTDTYIEKDSAINDEIEKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +G    Y  M+V L+ G   ++ EL+  LV+ QY+R 
Sbjct: 124 SATAALGERRDVIIVASVSCIYTLGDPIDYKNMVVSLRTGMQKDRDELIKKLVELQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKI 379
           DI  +R  FRV GD +EIFP +  D A RV  FG++I+ I+E   +TG+ ++NV T   I
Sbjct: 184 DINFVRNKFRVRGDVVEIFPVYSGDTAVRVEFFGDEIDRITEINTVTGE-VKNVVTHAAI 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  SHY+ P   +  A++ I+ E   R+   ++ G+L+EAQR+ +R  YD+EM++  G C
Sbjct: 243 YPASHYIVPPEKMRVAIEEIRREADERVAYFKENGKLIEAQRIAERTNYDIEMMQEIGFC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           + IENYSR ++GR PG  P TL +Y PED +LFVDESHVT+PQ+ GMY GD  RK +L +
Sbjct: 303 KGIENYSRVISGRAPGSTPYTLLDYFPEDFVLFVDESHVTLPQVRGMYGGDRSRKISLID 362

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL F+E+       + VSATPG++E E+    IVEQ+IRPTGL DP +
Sbjct: 363 YGFRLPSALDNRPLNFDEFYAKLNQIVFVSATPGAFEREKSTQ-IVEQVIRPTGLCDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EIN  A  G R+L+T LTK+MAEDLT Y+    +R+RYMH ++ T+
Sbjct: 422 EVRPVEGQIDDLLSEINQRAAAGERVLITTLTKKMAEDLTTYMENMGVRIRYMHHDIDTI 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FD LVGINLLREGLDIPE  LVAILDADKEGFLRS+TSL+QTIGRAA
Sbjct: 482 ERMEIIRDLRLGEFDALVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLVQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   KVI+YAD++T+S++ AI ET RRRE QL +N++H I PQ++K+ + ++++    +
Sbjct: 542 RNAQGKVIMYADSVTESMERAISETYRRREIQLAYNQEHGIVPQTIKKDVRDILEISARD 601

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           D  T       +   LS K+ +A +  L  +M  AA  L FE AA +RD+I++LK+
Sbjct: 602 DRDTRK----KRGKKLSHKEREALIAKLTLEMKNAAKILEFEHAAYLRDKIQKLKA 653


>gi|297588591|ref|ZP_06947234.1| excision endonuclease subunit UvrB [Finegoldia magna ATCC 53516]
 gi|297573964|gb|EFH92685.1| excision endonuclease subunit UvrB [Finegoldia magna ATCC 53516]
          Length = 656

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/657 (52%), Positives = 473/657 (71%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L  G+ + +  Q+L GVTGSGKTFTMA +I+ +QRP +V+A
Sbjct: 3   FKLHSKFKPTGDQPQAIDKLANGLENGKNHQILKGVTGSGKTFTMANIIQKVQRPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL SEF+ FFP NAVE+FVSYYDYYQPEAYV ++DTYIEK+SSINE++D++RH
Sbjct: 63  HNKTLAYQLASEFREFFPENAVEFFVSYYDYYQPEAYVVQSDTYIEKDSSINEELDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+VSSVSCIYG+G    Y  +++ L+ G   ++ E++  L+  QY R 
Sbjct: 123 SATMSLFERRDVIIVSSVSCIYGLGDPIDYENLVISLRPGMEKDRTEVMKKLIDIQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GDS++IFP+   + + R+  FG++I+ I+E   LTG+ +     + IY
Sbjct: 183 DINFTRGTFRVRGDSLDIFPASSGEKSVRIEFFGDEIDRITEIDALTGEIVGERNHVAIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T +  +  A+  I+EEL+ R    +   +LLEAQRLEQR  YD+EML+  G C 
Sbjct: 243 PASHYATTQKKVEKAIVTIEEELEDRSKYFKDHNKLLEAQRLEQRTRYDIEMLKEMGFCT 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++ R PG  P TL +Y P+D +  +DESHVT+PQI GMY GD  RK +L +Y
Sbjct: 303 GIENYSRHMSQRKPGSRPYTLIDYFPKDFVTMIDESHVTVPQIGGMYEGDRSRKTSLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF E+  +    I VSATPG +E  +    +VEQIIRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLRFNEFESMMNQVIYVSATPGKYEKAKTNE-VVEQIIRPTGLLDPKIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN   ++G R+L+T LTK+M+EDLT YL + +I+V Y+HS++ T+E
Sbjct: 422 VRPTKGQIDDLVSEINKTIEKGERVLITTLTKKMSEDLTRYLEDLDIKVTYLHSDIDTIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR GK+DVLVGINLLREGLD+PE  L+AILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RMEIIRDLREGKYDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+Y DTIT+S+ +AI ET RRRE Q E+N++HNI P ++ + + + I    +  
Sbjct: 542 NSNGHVIMYGDTITRSMDVAITETNRRREIQKEYNEEHNIIPTTINKSVRKRIQNTFV-- 599

Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A  N S D  +++  SK + +  +++L  +M  AA+ L+FE AA +RD+I+ LK++
Sbjct: 600 -AEENESYDVNKVTEFSKDEIEVIIENLNTEMLKAAEELDFERAATLRDQIRNLKNT 655


>gi|228936450|ref|ZP_04099248.1| UvrABC system protein B [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823282|gb|EEM69116.1| UvrABC system protein B [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 658

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|308177709|ref|YP_003917115.1| excinuclease ABC subunit B [Arthrobacter arilaitensis Re117]
 gi|307745172|emb|CBT76144.1| excinuclease ABC subunit B [Arthrobacter arilaitensis Re117]
          Length = 695

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/673 (51%), Positives = 476/673 (70%), Gaps = 22/673 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI  L + I++ EK  +LLG TG+GK+ T A ++E +QRP +V+ 
Sbjct: 14  FEVISEYEPAGDQPQAIKALTERINAGEKDIVLLGATGTGKSATTAWLVEQVQRPTLVLV 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+RH
Sbjct: 74  QNKTLAAQLANEFRELMPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D IVV++VSCIYG+G+ E Y   +V ++ G+ + +  +L   V  QY R 
Sbjct: 134 SATNSLLTRRDTIVVATVSCIYGLGTPEEYVAGMVTVRAGEELNRDAMLRQFVAMQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E+ A R+  FG+++E I   +P+TG+ IR    + I+
Sbjct: 194 DMDFHRGTFRVRGDTVEIIPMY-EEQAVRIEFFGDEVEAIHTLHPVTGEVIREETEMYIF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     ++ A+K I++EL +RL ELE + +L+EAQRL  R TYDLEM+E  G C 
Sbjct: 253 PASHYVAGAERMHKAIKRIEDELAVRLKELESQNKLVEAQRLRMRTTYDLEMMEQMGFCN 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P  L +Y P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 313 GIENYSRHIDGREAGSAPHCLIDYFPDDFLLVIDESHVTVPQIGAMYEGDMSRKRTLVEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+++E+      T+ +SATPG +EL +  G  VEQIIRPTGL+DP + 
Sbjct: 373 GFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGKYELGKSDGF-VEQIIRPTGLIDPEII 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ DEI     +  R+L+T LTKRMAEDLT+YL E  +RV+Y+HS+V T+ 
Sbjct: 432 VKPTKGQIDDLLDEIRTRVDRDERVLVTTLTKRMAEDLTDYLTEHQVRVQYLHSDVDTIR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR+G +DVLVGINLLREGLD+PE  LVAILDADK+GFLRS TSLIQTIGRAAR
Sbjct: 492 RVELLRELRMGSYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSATSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +VI+YAD IT ++  AI+ET RRRE Q  HNK+H I+P  +++KI ++ D +  ED
Sbjct: 552 NVSGQVIMYADKITDAMGQAIEETNRRREIQEAHNKEHGIDPMPLRKKIADITDQLARED 611

Query: 741 AATTNISIDAQQLSLSKKKGKA-------------------HLKSLRKQMHLAADNLNFE 781
           A T  + ++  +L+ + K+ KA                    ++ + +QMH AA  L FE
Sbjct: 612 ADTQEL-LNNNRLAKNAKRTKASSTVRKDGLAAAPAEDLLTQIEEMTEQMHAAAAELQFE 670

Query: 782 EAARIRDEIKRLK 794
            AARIRDE+  LK
Sbjct: 671 LAARIRDEVSELK 683


>gi|329121131|ref|ZP_08249762.1| excision endonuclease subunit UvrB [Dialister micraerophilus DSM
           19965]
 gi|327471293|gb|EGF16747.1| excision endonuclease subunit UvrB [Dialister micraerophilus DSM
           19965]
          Length = 707

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/654 (52%), Positives = 471/654 (72%), Gaps = 2/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P GDQP A+A L+KG++     Q+LLG TG+GKTF+MAKVIE++QRP ++++
Sbjct: 23  FKLEAPFGPKGDQPKAVASLVKGLNEGHWAQVLLGATGTGKTFSMAKVIESVQRPTLIIS 82

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ  SEFK+FFP+NAV YFVSYYDY+QPE+Y+P+TDTYI K+SS NE+IDR+RH
Sbjct: 83  PNKTLAAQTASEFKDFFPNNAVYYFVSYYDYFQPESYIPQTDTYIAKDSSRNEEIDRLRH 142

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G  E YS M + L+ G+ V + E++  LV  QY R 
Sbjct: 143 SATMALFERRDVIIVASVSCIYGLGDPEDYSTMGLSLRPGEEVSRDEIIEKLVNMQYLRN 202

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD++++FP+   +   R+ MFG++I+ ++EF  ++G+ +     I I+
Sbjct: 203 DLNFTRDTFRVRGDTLDVFPASSNNTGVRIEMFGDEIDRLTEFDIVSGETVSERNHIGIF 262

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    +  A++ I EEL  RL  L ++ RLLEAQRLEQR  YDLEM++  G C 
Sbjct: 263 PASHYVTTSDKMKRAVQTIGEELAERLKILREQDRLLEAQRLEQRTNYDLEMMQEIGYCS 322

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++ R  GEPP +L +Y P+D L+ +DESHVT+PQ+  MY GD  RK TL +Y
Sbjct: 323 GIENYSRHMSQRKAGEPPYSLLDYFPDDFLIMIDESHVTVPQLRAMYNGDRSRKITLVDY 382

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +E+   Q  + EQIIRPTGL+DP VE
Sbjct: 383 GFRLPSALDNRPLTFDEFTERINQVIYVSATPGPYEM-GVQTNLAEQIIRPTGLLDPSVE 441

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++DV  EI        R+L+T LTK+MAEDLT+YL + +I+VRY+HS++ T+E
Sbjct: 442 VRPIEGQIDDVISEIRKRKDCNERVLITTLTKKMAEDLTDYLMDADIKVRYLHSDIATIE 501

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLR G FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+TS+IQ IGRAAR
Sbjct: 502 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVIILDADKEGFLRSETSMIQVIGRAAR 561

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD+IT S++ AI+ET RRRE Q ++N +HNI P ++++++ ++I+   LE+
Sbjct: 562 NARGHVIMYADSITDSMKYAIEETERRREIQKKYNIEHNIIPHTIQKRVKDLINLTKLEE 621

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +     +++ + +LS +     +K + K M  AA+ + FEEAA  RD++  LK
Sbjct: 622 KSVA-YELNSDKRNLSDEDLFKQMKRVEKDMKKAAELMEFEEAALWRDKLSELK 674


>gi|315649791|ref|ZP_07902874.1| excinuclease ABC, B subunit [Paenibacillus vortex V453]
 gi|315274765|gb|EFU38146.1| excinuclease ABC, B subunit [Paenibacillus vortex V453]
          Length = 663

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/655 (53%), Positives = 476/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++++ P GDQP AI  L++G+H  +K Q LLG TG+GKTFT+A+ I  + RP +V+A
Sbjct: 11  FEIESEFQPQGDQPTAIDALVEGLHQGKKHQTLLGATGTGKTFTIAQTIAKVNRPTLVIA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP+N+V+YFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID++RH
Sbjct: 71  HNKTLAAQLASEFKEFFPNNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSSINEEIDKLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+GS   Y ++++ L++G    + ++LS LV  QY+R 
Sbjct: 131 SATSSLFERRDVIIVASVSCIYGLGSPHEYGELLLSLRVGMEKPRNQILSRLVDIQYQRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +RGTFRV GD IEIFP+   + A RV +FG++IE I+E   LTG+ +   + + I+
Sbjct: 191 DINFVRGTFRVRGDVIEIFPASKGEHAVRVELFGDEIERITEIDVLTGELVGERDHVAIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT   T+  A+  I+ EL+ RL  L  EG+LLEAQRLEQR  YD+EM++  G C 
Sbjct: 251 PASHFVTREETMRVALVNIERELEERLELLRSEGKLLEAQRLEQRTRYDIEMMKEVGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  LT R  G  P TL +Y P+D L  +DESHVT+PQI  MY GD  RK  L ++
Sbjct: 311 GIENYSGPLTFREAGATPYTLLDYFPDDMLFVIDESHVTLPQIRAMYNGDRARKTVLVDH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       I VSATPG +E+E C+  +VEQIIRPTGL+DP ++
Sbjct: 371 GFRLPSALDNRPLKFEEFEEKVNQIIYVSATPGPYEMEHCE-TMVEQIIRPTGLLDPIID 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+   ++  R+L+T LTK+M+EDLT+YL E  I+VRYMHS++KTLE
Sbjct: 430 VRPTEGQIDDLISEIHDRVERDERVLVTTLTKKMSEDLTDYLKEIGIKVRYMHSDIKTLE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLG F VLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RMQILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+Y + IT S+  AI ET RRR  Q+ +N++H I PQ++++KI +VI+   + +
Sbjct: 550 NSEGKVIMYGNKITDSMDRAIKETERRRSIQVAYNEEHGITPQTIRKKIRDVIEATKVAE 609

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T  +  + Q+  +SKK+ +  ++ L+ +M  AA NL FE AA +RD +  L++
Sbjct: 610 GKTDYLVGEGQK--MSKKERQNLIQRLQSEMKEAAKNLQFERAAELRDALLELQA 662


>gi|302518411|ref|ZP_07270753.1| excinuclease ABC, B subunit [Streptomyces sp. SPB78]
 gi|302427306|gb|EFK99121.1| excinuclease ABC, B subunit [Streptomyces sp. SPB78]
          Length = 717

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/699 (50%), Positives = 480/699 (68%), Gaps = 42/699 (6%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           + +  F++ + Y PSGDQP AIA+L K +   EK  +LLG TG+GK+ T A +IE +QRP
Sbjct: 9   RTVAPFEVVSPYSPSGDQPTAIAELEKRVKGGEKDVVLLGATGTGKSATTAWMIERLQRP 68

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE++
Sbjct: 69  TLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEV 128

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           +R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V LK+GD +++ ELL   V  
Sbjct: 129 ERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGDELDRDELLRRFVDI 188

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ I + +
Sbjct: 189 QYTRNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSLLHPLTGEVISDDQ 247

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  SHY+     +  A+  I++EL++RL ELEK+G+LLEAQRL  R TYD+EML  
Sbjct: 248 QVYVFPASHYIAGPERMERAINGIEKELEVRLAELEKQGKLLEAQRLRMRTTYDIEMLRQ 307

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G+C  +ENYS +   R PG PP TL +Y PED LL +DESHVT+PQI  MY GD  RK 
Sbjct: 308 IGTCSGVENYSMHFDDREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKR 367

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL ++GFRLPS +DNRPL++EE+       + +SATPG++EL +  G  VEQIIRPTGLV
Sbjct: 368 TLVDHGFRLPSALDNRPLKWEEFQKRIGQAVYLSATPGNYELSRSDG-FVEQIIRPTGLV 426

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP + ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I VRY+HS+
Sbjct: 427 DPEIVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMAEDLTDYFLELGINVRYLHSD 486

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTI
Sbjct: 487 VDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTI 546

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+ +V +YAD IT +++ AIDET RRR KQ+ +N +  I+PQ +++KI +++  
Sbjct: 547 GRAARNVSGQVHMYADKITPAMERAIDETNRRRAKQIAYNTERGIDPQPLRKKINDIVAS 606

Query: 736 ILLEDAATTNISIDAQQLSLSKK---------KGKA------------------------ 762
           I  E+  T ++     + +   K          GKA                        
Sbjct: 607 IAREEVDTDSLLGTGYRQAKEGKGAKTPVPALGGKATAESGKAAKGKAKKGKAATVPTDQ 666

Query: 763 -------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   ++ +  +M  AA +L FE AAR+RDE+  +K
Sbjct: 667 PGAALAQQIEEMTDRMRAAAADLQFEVAARLRDEVSEMK 705


>gi|163942851|ref|YP_001647735.1| excinuclease ABC subunit B [Bacillus weihenstephanensis KBAB4]
 gi|163865048|gb|ABY46107.1| excinuclease ABC, B subunit [Bacillus weihenstephanensis KBAB4]
          Length = 658

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/655 (54%), Positives = 476/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISEYSPQGDQPGAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+N+VEYFVSYYDYYQPEAYVP TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNSVEYFVSYYDYYQPEAYVPHTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSSLFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKLKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ    I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPKAI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI+    +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIHDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N+KH I P+++++ + +VI       
Sbjct: 544 NANGRVIMYADRITRSMGIAIEETQRRRSIQEAYNEKHGITPKTIQKGVRDVIRATTA-- 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A  T I        ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 602 AEDTEIYEVTPAKKMTKKERENTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|196039563|ref|ZP_03106868.1| excinuclease ABC, B subunit [Bacillus cereus NVH0597-99]
 gi|229094262|ref|ZP_04225338.1| UvrABC system protein B [Bacillus cereus Rock3-42]
 gi|196029723|gb|EDX68325.1| excinuclease ABC, B subunit [Bacillus cereus NVH0597-99]
 gi|228689115|gb|EEL42938.1| UvrABC system protein B [Bacillus cereus Rock3-42]
          Length = 658

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKVEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|300361294|ref|ZP_07057471.1| excision endonuclease subunit UvrB [Lactobacillus gasseri JV-V03]
 gi|300353913|gb|EFJ69784.1| excision endonuclease subunit UvrB [Lactobacillus gasseri JV-V03]
          Length = 671

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/655 (52%), Positives = 457/655 (69%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G  + EK Q+L G TG+GKTFTMA VI  + +P +V++
Sbjct: 10  FELVSKFQPAGDQEQAIKKLTDGFENGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
             T  L+ RND IVV+SVSCIYG+G    Y+  +V +  G  + +  LL  LV  QY R 
Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSISEGQEISRDVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A+RV  FG++I+ I E   LTG+ I   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVDSLTGEVIGEREQVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFVTNEQIMQRALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G+PP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL Q     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQTDH-KVEQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIKGQIDDLVGEINKRIDRDERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   L+QTIGRAAR
Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD+IT S++ AID T RRR  Q++ NK+H I P+++ + I +VI      D
Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608

Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 S D      L+KK+ +  +K+L  QM  AA  L+FEEAA +RD I  L+
Sbjct: 609 EKENKESFDDLNFDELTKKQKQTMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLQ 663


>gi|229199283|ref|ZP_04325951.1| UvrABC system protein B [Bacillus cereus m1293]
 gi|228584208|gb|EEK42358.1| UvrABC system protein B [Bacillus cereus m1293]
          Length = 658

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|313622414|gb|EFR92875.1| excinuclease ABC subunit B [Listeria innocua FSL J1-023]
          Length = 663

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/656 (53%), Positives = 472/656 (71%), Gaps = 5/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI QL+ G+    K Q LLG TG+GKTFT++ VI+ + +P +VMA
Sbjct: 10  FELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS   Y +M+V L++G  + + +LL  LV  QY R 
Sbjct: 130 SATAALFERRDVIIIASVSCIYGLGSPVEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++   R+  FG++IE I E   LTG+ I + E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGDREHVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  IK EL+ RL  L  E +LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 250 PASHFVTRPDIMKKAIVNIKAELEDRLKVLRAENKLLEAQRLEQRTNYDLEMMEEMGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y P+D  + +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 310 GIENYSRHLSLRPAGVTPYTLLDYFPDDFQIVIDESHVTMPQIRGMFNGDQARKQMLVDH 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + +SATPG +ELE+   +I EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEKNPDVI-EQIIRPTGLLDPIVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+ DEIN   ++  R+L+T LTK+M+EDLT YL E  ++V+Y+HSEVKTLE
Sbjct: 429 IRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG +DV+VGINLLREG+D+PE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 489 RIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P++++++I  +I       
Sbjct: 549 NENGRVIMYADKMTDSMRNSISETERRRKIQIEYNEKHGITPKTIRKEIRGIIAAT---S 605

Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA    ++    LS +SKK+    ++ +  +M  AA  L+FE AA +RD +  +K+
Sbjct: 606 AADEREAVKQHDLSKMSKKERDIFIEGMEHEMKEAAKALDFERAAELRDALLEIKA 661


>gi|256846273|ref|ZP_05551730.1| excinuclease ABC, B subunit [Fusobacterium sp. 3_1_36A2]
 gi|256718042|gb|EEU31598.1| excinuclease ABC, B subunit [Fusobacterium sp. 3_1_36A2]
          Length = 663

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/659 (52%), Positives = 482/659 (73%), Gaps = 16/659 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +DY P+GDQPAAI  ++K I +  K Q+LLGVTGSGKTFT+A VIE +QRP+++
Sbjct: 4   NLFKIHSDYKPTGDQPAAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPSLI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID++
Sbjct: 64  IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     + +KEL+  L+  +Y 
Sbjct: 124 RNAATAALIHRRDVIIVASVSSIYGLGSPDTYRRMTIPIDKQTGISRKELMKRLIALRYD 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377
           R D+   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQK++ N+E I
Sbjct: 184 RNDVAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLERI 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + Y+T     +  +K IK++LK+ + + E + +LLEAQRL+QR  YDLEM+   G
Sbjct: 243 VIYPATQYLTADNDKDRIIKEIKDDLKVEVKKFEDDKKLLEAQRLKQRTEYDLEMITEIG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSRYL+G+NPGE P TLFEY P+D +LF+DESH+T+PQ+ GMY GD  RK +L
Sbjct: 303 YCKGIENYSRYLSGKNPGETPDTLFEYFPKDFILFIDESHITVPQVRGMYNGDRARKESL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E GFRL + +DNRPLRFEE+      T+ +SATPG +E+E     I EQ+IRPTG+VDP
Sbjct: 363 VENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNHIAEQLIRPTGIVDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR  + QV+D+ DEI   A +  R+L+T LTK++AE+LTEY  E  ++V+YMHS++ 
Sbjct: 423 EIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTIGR
Sbjct: 483 TLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  ++I+P+S+ ++I        
Sbjct: 543 AARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYNHIDPKSIVKEIA------- 595

Query: 738 LEDAATTNISIDAQQLSLSKK--KGKAHLK----SLRKQMHLAADNLNFEEAARIRDEI 790
            ED    +  I+ ++   +KK  + KA ++     L K++    + L+FE+A  +RDE+
Sbjct: 596 -EDLINLDYGIEEKKFENNKKVFRNKADIEKEITKLEKKIKKLVEELDFEQAIVLRDEM 653


>gi|168334395|ref|ZP_02692574.1| excinuclease ABC, B subunit [Epulopiscium sp. 'N.t. morphotype B']
          Length = 659

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/654 (53%), Positives = 463/654 (70%), Gaps = 4/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+   GDQ AAI+ L + I S  + Q LLGVTGSGKTFTMA +IE  Q+P +++A
Sbjct: 4   FRLHSDFAAMGDQTAAISVLSESIESGNRYQTLLGVTGSGKTFTMANIIEQTQKPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV ++DT+IEK+SS+NE+ID++RH
Sbjct: 64  HNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVAQSDTFIEKDSSVNEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G    Y   ++ ++ G   ++ +LL  LV  QY R 
Sbjct: 124 SATASLAERRDVIIVASVSCIYGLGDPLDYEDQVLSIRTGMDFDRDDLLRKLVHIQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD +E+ P+ + + A RV  FG++IE+ISE   LTG+ +     + I+
Sbjct: 184 DDDFSRGTFRVRGDVVEVIPAGMSESAIRVEFFGDEIEKISEIDSLTGKVLGIRNHVSIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY      L+ A+K I+ EL  +L+EL+K+ +LLE QRL QR  +D+EML   G C 
Sbjct: 244 PGSHYTVSPDKLSAAIKRIESELNTQLLELKKQDKLLEMQRLTQRTNFDIEMLREMGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L+GR+ G  P TL +Y P+D L+ VDESH+T+PQI GM  GD  RK+TL +Y
Sbjct: 304 GIENYSLHLSGRDYGSTPFTLLDYFPDDYLIIVDESHITLPQIRGMSNGDRARKSTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       + VSATP  +ELE  +  I EQ+IRPTGL+DP +E
Sbjct: 364 GFRLPSAIDNRPLNFDEFEQKINQILYVSATPSQYELEHSEA-IGEQLIRPTGLLDPAIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+    Q++D+  +I+       ++L+T LTKRM+EDLT YL E  I+V+Y+HS+++TLE
Sbjct: 423 IKXXTGQIDDLLTQIHSTVAAAGKVLVTTLTKRMSEDLTAYLQEVGIKVKYLHSDIETLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLR+G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 483 RIEIVRDLRMGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSATSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YADTIT+S+++AIDET RRR+ Q E+N+ H I PQ++K+ + E+I     E 
Sbjct: 543 NSQGRVIMYADTITRSMKIAIDETNRRRKIQQEYNEAHGITPQTIKKAVRELIAATKSEK 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            ATT   I+    S+S  + +  +    K M  AA  L FE+AA +RD +  LK
Sbjct: 603 TATT---INKSPESMSAVELERAITKTEKSMKKAAQELEFEKAATLRDALIELK 653


>gi|47567376|ref|ZP_00238089.1| excinuclease ABC, B subunit [Bacillus cereus G9241]
 gi|47568446|ref|ZP_00239146.1| excinuclease ABC, B subunit [Bacillus cereus G9241]
 gi|47569268|ref|ZP_00239953.1| excinuclease ABC, B subunit [Bacillus cereus G9241]
 gi|118480209|ref|YP_897360.1| excinuclease ABC subunit B [Bacillus thuringiensis str. Al Hakam]
 gi|228988390|ref|ZP_04148482.1| UvrABC system protein B [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229158730|ref|ZP_04286788.1| UvrABC system protein B [Bacillus cereus ATCC 4342]
 gi|47554039|gb|EAL12405.1| excinuclease ABC, B subunit [Bacillus cereus G9241]
 gi|47554837|gb|EAL13188.1| excinuclease ABC, B subunit [Bacillus cereus G9241]
 gi|47555997|gb|EAL14335.1| excinuclease ABC, B subunit [Bacillus cereus G9241]
 gi|118419434|gb|ABK87853.1| Excinuclease ABC subunit B [Bacillus thuringiensis str. Al Hakam]
 gi|228624714|gb|EEK81483.1| UvrABC system protein B [Bacillus cereus ATCC 4342]
 gi|228771371|gb|EEM19845.1| UvrABC system protein B [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 658

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +NK+H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRSIQEAYNKEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|23099943|ref|NP_693409.1| excinuclease ABC subunit B [Oceanobacillus iheyensis HTE831]
 gi|81846020|sp|Q8ENJ5|UVRB_OCEIH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|22778174|dbj|BAC14444.1| excinuclease ABC subunit B [Oceanobacillus iheyensis HTE831]
          Length = 660

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/655 (53%), Positives = 477/655 (72%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI ++ K + + ++ Q LLG TG+GKTFTM+ V++ + RP +V+A
Sbjct: 5   FELVSAYDPAGDQPNAINEITKKVLAGQRHQTLLGATGTGKTFTMSNVVKEINRPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D ++V+SVSCIYG+G+ E Y   ++ L++G   ++ +LL  LV+ QY R 
Sbjct: 125 SATSALFERQDVLIVASVSCIYGLGNPEEYKSQVLSLRMGMEKDRDQLLRDLVEVQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GDS+EI P+  E+   RV  FG++I+ I E   LTG+ I + E + I+
Sbjct: 185 DINFQRGTFRVRGDSVEIIPASHEEYCIRVEFFGDEIDRIREVDALTGEIIGDREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ +L E+   G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKIAIQNIEKELEEQLKEMRDNGKLLEAQRLEQRTNYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PG  P TL ++ PED L+ +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRGPGAVPYTLLDFFPEDFLVIIDESHVTLPQIRGMFNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPLRF+E+       + VSATPG +ELE     + EQIIRPTGL+DP VE
Sbjct: 365 GFRLPSAMDNRPLRFQEFEDKTKQLVYVSATPGPYELEHSPE-MTEQIIRPTGLLDPKVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++++ +EI +  ++  R+L+T LTK+M+EDLT+YL E  ++V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDNLIEEIRIRMEKNERVLITTLTKKMSEDLTDYLKEIGMKVAYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIE+IRDLR+GKFDVLVGINLLREGLDIPE  LV+ILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RIEVIRDLRVGKFDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD +T S++ AIDET RRR  Q E+N++H I P+++++++ +VI      +
Sbjct: 544 NENGKVIMYADKMTDSMKKAIDETNRRRTIQTEYNEQHGITPKTIRKEVRDVIKATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              +      Q   ++KK+ +  ++ +  +M  AA +L+FE+AA +RD I  LK+
Sbjct: 604 ETESYEPKTKQINKMTKKEREKVIEQMENEMKQAAKDLDFEKAAELRDVILELKA 658


>gi|256832479|ref|YP_003161206.1| excinuclease ABC, B subunit [Jonesia denitrificans DSM 20603]
 gi|256686010|gb|ACV08903.1| excinuclease ABC, B subunit [Jonesia denitrificans DSM 20603]
          Length = 702

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/674 (52%), Positives = 475/674 (70%), Gaps = 29/674 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +++ PSGDQP+AIA+L + I   EK  +LLG TG+GK+ T A +IE +QRP ++MA
Sbjct: 27  FDVVSEFSPSGDQPSAIAELTRRIQGGEKDVVLLGATGTGKSATSAWLIEQLQRPTLIMA 86

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE+++R+RH
Sbjct: 87  PNKTLAAQLATEFRELLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEEVERLRH 146

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ + Y   +VQ+ +GD +++  LL   V  QY R 
Sbjct: 147 SATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVQIDVGDEIDRDGLLRHFVSMQYTRN 206

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E++A R+  FG+DIE I   +PLTG+ +  V+ I I+
Sbjct: 207 DVAFTRGTFRVRGDTVEIIPVY-EELAIRLEFFGDDIEAIYTLHPLTGEVVSQVQRIHIF 265

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I+ EL+ RL EL ++ +LLEAQRL  R TYD+EM+   GSC 
Sbjct: 266 PASHYVAGPERMERAIASIEAELEERLAELNRDNKLLEAQRLSMRTTYDIEMMRQVGSCS 325

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG  P TL +Y P+D LL +DESHVT+PQI  MY GD  RK +L E+
Sbjct: 326 GIENYSRHIDGRAPGSAPHTLLDYFPDDFLLIIDESHVTVPQIGAMYEGDASRKRSLVEH 385

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL +EE+      T+ +SATPG +EL    G  VEQIIRPTGLVDP + 
Sbjct: 386 GFRLPSAMDNRPLTWEEFTERIGQTVYLSATPGDYELALSNG-TVEQIIRPTGLVDPKIT 444

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ DEIN    +  RIL+T LTK+M+EDLT+YL ++ + VRY+HS++ TL+
Sbjct: 445 VKPTKGQIDDLLDEINERTAKNERILVTTLTKKMSEDLTDYLLDKGVAVRYLHSDIDTLK 504

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG+FDVLVGINLLREGLD+PE  LVAILDADK+GFLRS  SLIQTIGRAAR
Sbjct: 505 RVELLRGLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSPRSLIQTIGRAAR 564

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD+IT ++  AI+ET RRREKQ+ +N +H ++PQ +++KI +V D +  ED
Sbjct: 565 NVSGEVHMYADSITPAMAQAIEETERRREKQIAYNTEHGVDPQPLRKKIADVTDMLARED 624

Query: 741 AATTNISIDAQQL------------------SLSKKKG--KAHLKSLRKQMHLAADNLNF 780
                  ID Q+L                   +    G   A +  L +QMH AA  L F
Sbjct: 625 -------IDTQELLAGGYRQTTTPTPAHTPSGVPSATGDLSALITQLTEQMHQAAAELQF 677

Query: 781 EEAARIRDEIKRLK 794
           E AAR+RDE+  LK
Sbjct: 678 ELAARLRDELSDLK 691


>gi|296140129|ref|YP_003647372.1| excinuclease ABC subunit B [Tsukamurella paurometabola DSM 20162]
 gi|296028263|gb|ADG79033.1| excinuclease ABC, B subunit [Tsukamurella paurometabola DSM 20162]
          Length = 720

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/692 (51%), Positives = 478/692 (69%), Gaps = 33/692 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y P+GDQP AI QL   +++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 28  FQVVSEYEPAGDQPQAIEQLAGRLNAGERDVVLLGATGTGKSATTAWLIEKVQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 88  PNKTLAAQLANELRAMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ +SY    VQL++G  V++  LL  LV  QY R 
Sbjct: 148 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVQLEVGMEVDRDALLRLLVDVQYTRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG+++E +   +PLTG  +R VE ++I+
Sbjct: 208 DMAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEVEALYYLHPLTGDVVRQVENLRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A++ I+ EL+ RL E E++G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 267 PATHYVAGPERMARAIEGIESELEERLAEFERQGKLLEAQRLRMRTQYDVEMMRQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED LL +DESHVT+PQI  M+ GD  RK  L ++
Sbjct: 327 GIENYSRHIDGRAAGSAPATLLDYFPEDFLLVIDESHVTVPQIGAMFEGDTSRKRNLVDF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSAVDNRPLTWEEFTERVGQTVYLSATPGQYELGQSGGEFVEQVIRPTGLVDPQVV 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+  + Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ TL 
Sbjct: 447 IKPTKGQIDDLMHEIRERTEKDERVLVTTLTKKMAEDLTDYLLEAGIRVRYLHSDIDTLR 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRREKQ+ +N +  ++PQ +++KI +++D +  E 
Sbjct: 567 NVSGEVHMYADKITDSMRNAIDETDRRREKQIAYNTEMGVDPQPLRKKIADILDQVYTE- 625

Query: 741 AATTNISIDAQQLSLSK-KKGKAHLKS----------------------------LRKQM 771
           A  T  +I     + ++ ++ +  L+S                            L  QM
Sbjct: 626 ADDTEAAIGGPGRNATRGRRAQGELRSASSVSAGMYEGEDVKSMPRAELADLISELTDQM 685

Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
             AA  L FE A RIRDEI  LK     +G+D
Sbjct: 686 MNAARELQFELAGRIRDEIADLKKE--LRGMD 715


>gi|218906339|ref|YP_002454173.1| excinuclease ABC, B subunit [Bacillus cereus AH820]
 gi|228917770|ref|ZP_04081310.1| UvrABC system protein B [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|301056626|ref|YP_003794837.1| excinuclease ABC subunit B [Bacillus anthracis CI]
 gi|218537443|gb|ACK89841.1| excinuclease ABC, B subunit [Bacillus cereus AH820]
 gi|228841875|gb|EEM86982.1| UvrABC system protein B [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|300378795|gb|ADK07699.1| excinuclease ABC subunit B [Bacillus cereus biovar anthracis str.
           CI]
          Length = 658

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|15827723|ref|NP_301986.1| excinuclease ABC subunit B [Mycobacterium leprae TN]
 gi|221230200|ref|YP_002503616.1| excinuclease ABC subunit B [Mycobacterium leprae Br4923]
 gi|13431967|sp|P57991|UVRB_MYCLE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|13093274|emb|CAC31768.1| excinuclease ABC subunit B [Mycobacterium leprae]
 gi|219933307|emb|CAR71482.1| excinuclease ABC subunit B [Mycobacterium leprae Br4923]
          Length = 698

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/690 (52%), Positives = 475/690 (68%), Gaps = 30/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I + E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 7   FEVISPHEPAGDQPAAIDELQRRILAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 67  PNKTLAAQLANELRGMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ +SY    V+L + + V +  LL  LV  QY R 
Sbjct: 127 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVELAVSNEVPRDGLLRLLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 187 DLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL E E++G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 246 PATHYVAGPERMAQAISAIEEELAERLAEFERQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQSGGEFVEQVIRPTGLVDPKVV 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 426 VKPTKGQIDDLIGEIRKRANADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YADTIT S+  AIDET RRR KQ+ +N  + I+PQ +++KI +++D +  E 
Sbjct: 546 NVSGEVHMYADTITDSMTEAIDETERRRAKQIAYNNANGIDPQPLRKKIADILDQVYREA 605

Query: 741 AATTNISIDAQQLSLSKKK-----------------------GKAHL----KSLRKQMHL 773
             T  + +     ++S+ +                        +A L    K L  QM  
Sbjct: 606 DDTDTVQVGGSGRNVSRGRRAQSEPVRSVSVGVFEGRDTAGMPRAELADLIKDLTAQMMA 665

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE AAR RDEI  LK     +G+D
Sbjct: 666 AASDLQFELAARFRDEIADLKKE--LRGMD 693


>gi|30023201|ref|NP_834832.1| excinuclease ABC subunit B [Bacillus cereus ATCC 14579]
 gi|229130411|ref|ZP_04259369.1| UvrABC system protein B [Bacillus cereus BDRD-Cer4]
 gi|81837237|sp|Q815I3|UVRB_BACCR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|29898761|gb|AAP12033.1| Excinuclease ABC subunit B [Bacillus cereus ATCC 14579]
 gi|228653110|gb|EEL08990.1| UvrABC system protein B [Bacillus cereus BDRD-Cer4]
          Length = 658

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/655 (54%), Positives = 480/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   E + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL + G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNENGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVTYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 EIETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|227496065|ref|ZP_03926374.1| excision endonuclease subunit UvrB [Actinomyces urogenitalis DSM
           15434]
 gi|226834393|gb|EEH66776.1| excision endonuclease subunit UvrB [Actinomyces urogenitalis DSM
           15434]
          Length = 698

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/677 (52%), Positives = 482/677 (71%), Gaps = 25/677 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQPAAIA+L + +++ EK  +LLG TG+GK+ T A ++E +QRP +++ 
Sbjct: 14  FEVISPYTPSGDQPAAIAELTERLNAGEKDIVLLGATGTGKSATTAWLVEQVQRPTLILE 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ+ +EF+   P NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH
Sbjct: 74  PNKTLAAQMAAEFRELLPGNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ + Y   +  L +G+ +++ ELL   V  QY R 
Sbjct: 134 SATNSLLTRRDVVVVSSVSCIYGLGTPQEYVDRMTPLAVGERIDRDELLRRFVGMQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++IE ++  +P+TG  I  V+ + ++
Sbjct: 194 DIDFTRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIESLATLHPVTGDVISTVDQVFVF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     L  A+K I++EL  RL  LE++G+LLEAQRL  R TYDLEML   G+C 
Sbjct: 253 PASHYVAGPERLTRAIKGIEDELADRLAVLERDGKLLEAQRLRMRTTYDLEMLGQIGTCS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS ++ GR+PG PP TL +Y PED LL +DESHVT+PQI  M+ GD  RK TL ++
Sbjct: 313 GVENYSMHIDGRSPGTPPNTLLDYFPEDFLLVIDESHVTVPQIGAMHEGDASRKRTLVDH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+      T+ +SATPG +E+++  G+ VEQIIRPTGLVDP + 
Sbjct: 373 GFRLPSALDNRPLTFAEFEERIGQTVYLSATPGDYEMKRSDGV-VEQIIRPTGLVDPKIV 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ +E+     +  R+L+T LTKRMAEDLT YL +R ++V Y+HS+V TL 
Sbjct: 432 VKPTQGQIDDLLEEVRARTDKDERVLVTTLTKRMAEDLTTYLADRGVKVEYLHSDVDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 492 RVELLRELRLGQFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD +T +++ AIDET RRR KQ+ +N  H I+PQ +++KI +V D +  ED
Sbjct: 552 NVSGEVHMYADKVTPAMREAIDETERRRAKQMAYNDAHGIDPQPLRKKIADVTDMLARED 611

Query: 741 AATTNISI-------DAQQLSLSKKKGKAHLK----------------SLRKQMHLAADN 777
             T  +         D Q  +  KK  +A ++                 L  QMH AA++
Sbjct: 612 VDTEELLAGGYRGHEDRQVATRRKKAAEATVREKLAGAAEADLVELINELTGQMHAAAED 671

Query: 778 LNFEEAARIRDEIKRLK 794
           L+FE AAR+RDEI+ LK
Sbjct: 672 LHFELAARLRDEIQDLK 688


>gi|331003461|ref|ZP_08326960.1| UvrABC system protein B [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330412507|gb|EGG91896.1| UvrABC system protein B [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 655

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/656 (53%), Positives = 460/656 (70%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI  L+ G     + Q LLG TGSGKTFTMA VI+ +Q+P +++A
Sbjct: 3   FKLHSEFSPTGDQPQAIEALVNGFKEGNQFQTLLGATGSGKTFTMANVIQRLQKPTLIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH
Sbjct: 63  HNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+GS   Y +M+V L+ G   ++ +++  L+  QY R 
Sbjct: 123 SATASLSERKDVIIVASVSCIYGLGSPIDYQEMVVSLRPGMERDRDDVIRKLIDMQYDRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +E+FP+     A R   FG+++E+I E   LTG  +  +    I+
Sbjct: 183 DMDFHRGTFRVRGDVLEVFPAASTSTALRFEFFGDEVEKILEIDTLTGNILAELAHAVIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A ++I EE   R+   + E +L+EAQR+++R  +D+EM+  TG C 
Sbjct: 243 PASHYVVAPEKMKIATEHILEECDERVKFFKSEDKLIEAQRIDERTHFDVEMMRETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PGEPP TL +Y  +D L+ VDESH+TIPQ+ GMY GD  RK TL  Y
Sbjct: 303 GIENYSRHLTGSAPGEPPYTLIDYFKDDFLIIVDESHITIPQVRGMYAGDRSRKTTLVNY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATP  +E +  + +  EQIIRPTGL+DPP+ 
Sbjct: 363 GFRLPSALDNRPLEFSEFESKIDQMLFVSATPSVYENDH-EMLRTEQIIRPTGLLDPPIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N   ++  +IL+T LTKRMAEDLTEY+ E  IRVRY+HS++ TLE
Sbjct: 422 VRPVEGQIDDLISEVNKEIEKKNKILITTLTKRMAEDLTEYMKEVGIRVRYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL KFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RAEIIRDMRLDKFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD +T S++ AIDET RRR  Q  +N++H I P ++K+ +    D I +  
Sbjct: 542 NADGHVIMYADNMTDSMKAAIDETYRRRGIQEAYNREHGITPTTIKKAVR---DLIAISK 598

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           AA +  +ID    S+ K +    +K L K+M  AA  L+FE AA +RD+I  L+++
Sbjct: 599 AAESVSTIDKDVESMDKAEINKLIKELEKKMFRAAAELDFENAALLRDKISELRAN 654


>gi|260684917|ref|YP_003216202.1| excinuclease ABC subunit B [Clostridium difficile CD196]
 gi|260688575|ref|YP_003219709.1| excinuclease ABC subunit B [Clostridium difficile R20291]
 gi|260211080|emb|CBA66456.1| excinuclease ABC subunit B [Clostridium difficile CD196]
 gi|260214592|emb|CBE07162.1| excinuclease ABC subunit B [Clostridium difficile R20291]
          Length = 664

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/659 (52%), Positives = 481/659 (72%), Gaps = 7/659 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D   F++++D+ P+GDQP AI  ++  I+  EK   LLGVTGSGKTFTMA +I+ +++P 
Sbjct: 7   DTMDFKIKSDFKPTGDQPEAIKSIVDSINRNEKFSTLLGVTGSGKTFTMANIIQQVKKPT 66

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           ++MA NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV  +DTYIEK++SIN++ID
Sbjct: 67  LIMAHNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEID 126

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++RHSAT S+LER D I++SSVSCIYG+G  + Y ++++ ++ G   ++ +++  L++ Q
Sbjct: 127 KLRHSATASILERRDTIIISSVSCIYGLGDPKDYKELMLSIRPGMQRDRDDVIKRLIEIQ 186

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R DI   RGTFRV GD +EIFP+  ++ A R+  FG++++ I+E   +TG+ +     
Sbjct: 187 YERNDINFTRGTFRVRGDILEIFPASNDEKAIRIEFFGDEVDRITEIDYVTGKIVGTRNH 246

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           + I+  SHYVT    +  A+  I+ EL+ ++   ++  RLLEAQR+EQR  YD+EML+  
Sbjct: 247 VVIFPASHYVTTPERIEKAIVEIENELQEQIKFFKENDRLLEAQRIEQRTKYDIEMLKEI 306

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G CQ IENYSR++TGR+ GE P TL ++ P+D L+ VDE+HVTIPQ+ GMY GD  RK +
Sbjct: 307 GFCQGIENYSRHITGRSEGERPYTLMDFFPDDYLIIVDEAHVTIPQVRGMYAGDRSRKTS 366

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L E GFRLPS +DNRPL F+E+       + VSATPG +E++  +  I EQIIRPTGL+D
Sbjct: 367 LIENGFRLPSALDNRPLNFQEFEGNINQMLFVSATPGPYEIQHSE-TIAEQIIRPTGLLD 425

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P VE+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT YL E  I+V+Y+HS++
Sbjct: 426 PIVEVRPINNQIDDLVGEITKTIEKNERVLITTLTKKMSEDLTNYLKEIGIKVKYLHSDI 485

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER EIIRDLRLGKFDVLVGINLLREGLDIPE  L+AILDADKEGFLRS+T+LIQTIG
Sbjct: 486 VTLERTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETALIQTIG 545

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N +VI+YAD IT S+Q AIDET RRR+ Q  +N++HNI P+++++ I + I+  
Sbjct: 546 RAARNENGRVIMYADRITDSMQNAIDETKRRRDIQNLYNEEHNIIPKTIQKNIRDSIEAT 605

Query: 737 -LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            + E+     IS D       K + +A++  L+ +M  AA NL FE AA +RD++K+L+
Sbjct: 606 KVAEEEVVYGIS-DTD----DKDEIRANIDKLKSEMMEAAQNLQFERAAELRDKVKQLE 659


>gi|330469191|ref|YP_004406934.1| excinuclease ABC subunit B [Verrucosispora maris AB-18-032]
 gi|328812162|gb|AEB46334.1| excinuclease ABC subunit B [Verrucosispora maris AB-18-032]
          Length = 702

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/689 (51%), Positives = 474/689 (68%), Gaps = 29/689 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQPAAI +L + +   ++  +LLG TG+GK+ T A +IE MQRP +V+A
Sbjct: 12  FKVISEFQPAGDQPAAIDELERRVRRGDRHTVLLGATGTGKSATTAWLIERMQRPTLVLA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK L AQL  EF    P NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS+NE+++R+RH
Sbjct: 72  PNKTLCAQLAKEFSELLPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSVNEEVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV++VS IYG+G+ E Y    V++ +G  +++ +LL  LV  QY R 
Sbjct: 132 SATMSLLTRRDVVVVATVSAIYGLGTPEEYLDRAVRVAVGQELDRDQLLRRLVDIQYTRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P++ E++A R+ +FG+++E++    PLTG  +R V+ + I+
Sbjct: 192 DMAFQRGTFRVRGDTLEIIPAY-EELAVRIELFGDEVEKLYYLNPLTGDVVREVDHLLIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY      +  A++ I+ EL  RL ELE++G+LLEAQRL  R TYD+EM+   G C 
Sbjct: 251 PATHYAAGPQRMERAIRDIETELAERLAELERQGKLLEAQRLRMRTTYDIEMMRQVGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR PG PP  L +Y P+D L  +DESHVTIPQI GMY GD  RK  L ++
Sbjct: 311 GIENYSMHIDGRLPGSPPHCLLDYFPDDFLTVIDESHVTIPQIGGMYEGDASRKRMLIDH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRF+E+       + +SATPG WELE  QG  VEQ+IRPTGLVDP V 
Sbjct: 371 GFRLPSAADNRPLRFDEFLERVGQMVFLSATPGPWELEHAQGEFVEQVIRPTGLVDPEVV 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+  + Q++D+  EI L  ++  R+L+T LTK+MAEDL++YL E  IRVRY+HSEV TL 
Sbjct: 431 IKPTKGQIDDLMHEIKLRTERDERVLVTTLTKKMAEDLSDYLLENGIRVRYLHSEVDTLR 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 491 RVELLRELRRGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGRSLIQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738
           NV+ +V +YAD IT S+  AIDET RRR KQ+ HN+ H I+P+ +++KI +++D I    
Sbjct: 551 NVSGQVHMYADKITPSMADAIDETNRRRAKQIAHNEAHGISPEPLRKKIHDILDDIYREA 610

Query: 739 EDAATTNISIDAQQLSLSK------------------KKGKAH------LKSLRKQMHLA 774
           ED   T      +QLS  K                  ++G A       ++ L  QM  A
Sbjct: 611 EDIEATRAGGAVRQLSRGKAPVKETRSRARAGAATPAREGMARAELAQLIQDLSDQMLAA 670

Query: 775 ADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           A  L FE AARIRDE+  LK     +G+D
Sbjct: 671 ARELQFELAARIRDEVSELKKE--LRGMD 697


>gi|228948883|ref|ZP_04111158.1| UvrABC system protein B [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228810845|gb|EEM57191.1| UvrABC system protein B [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 658

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRRAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|116492251|ref|YP_803986.1| excinuclease ABC subunit B [Pediococcus pentosaceus ATCC 25745]
 gi|116102401|gb|ABJ67544.1| Excinuclease ABC subunit B [Pediococcus pentosaceus ATCC 25745]
          Length = 667

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/656 (52%), Positives = 462/656 (70%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L+ GI S EK Q+LLG TG+GKTFT++ VI+ + +P ++++
Sbjct: 10  FELVSKYQPTGDQPTAINELVDGIKSGEKEQILLGATGTGKTFTISNVIQKVNKPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID +RH
Sbjct: 70  HNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDELRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y    + L++G  +++ +LL  LV  QY R 
Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPREYQDQALTLRVGQEIDRNKLLRELVDIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  +  + RV  FG++I+ + E   LTG+ I + + I I+
Sbjct: 190 DIDFQRGRFRVHGDVVEIFPAANDAHSIRVEFFGDEIDRMREMDALTGEIIGDRDHITIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I+ ELK RL EL+ EG+LLEAQRL QR TYD+EML+  G   
Sbjct: 250 PATHFMTNEDRMEHAIKNIEAELKDRLEELDGEGKLLEAQRLRQRTTYDIEMLKEMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P TL ++ P+D LL VDESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRKPGEAPYTLLDFFPDDFLLVVDESHVTMPQVRGMYNGDRARKQQLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + +SATPG +E E+    +V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHINQVVYMSATPGDYENERTNN-VVQQIIRPTGLLDPIIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+YL +  I+V Y+HS++KTLE
Sbjct: 429 VRPIMGQMDDLLGEINQRIEKDERVFVTTLTKKMAEDLTDYLKDMGIKVAYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  IIRDLR+GK+DVLVGINLLREG+D+PE  LVAILDADKEGFLR+  S+IQ  GRAAR
Sbjct: 489 RTRIIRDLRVGKYDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNTRSMIQVAGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-LE 739
           N N  VI+YAD +TKS+Q  IDET RRR  Q  +N++H I P ++K+ I  +I      E
Sbjct: 549 NENGHVIMYADHMTKSMQETIDETARRRTIQEAYNREHGITPHTIKKDIRSLISSTSDTE 608

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           D    +  +D     +  K  K  + +L  QM  AA  L+FE+AA +RD +  LK+
Sbjct: 609 DKGKKDDFLDVDFADMDSKDQKEMIANLEDQMRAAAKKLDFEKAANLRDTVLELKA 664


>gi|116333297|ref|YP_794824.1| excinuclease ABC subunit B [Lactobacillus brevis ATCC 367]
 gi|122270015|sp|Q03SM9|UVRB_LACBA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|116098644|gb|ABJ63793.1| Excinuclease ABC subunit B [Lactobacillus brevis ATCC 367]
          Length = 668

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/656 (53%), Positives = 463/656 (70%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AI QL  GI + EK Q+LLG TG+GKTFT++ VI+ + +P +V++
Sbjct: 10  FDLVSKYQPTGDQPEAINQLTHGIEAGEKAQILLGATGTGKTFTISNVIKNVNKPTLVLS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y   +V L++G  +E+  LL  LV  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPTEYKNHVVSLRVGQEIERDALLRKLVNIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD +EIFP+  ++ A RV  FG++I+ I E   LTG+ + + E + I+
Sbjct: 190 DYDFQRGRFRVHGDVVEIFPASRDERALRVEFFGDEIDRIREVDALTGEIVGDREHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A   I+ ELK RL ELE +G+LLEAQRL+QR TYDLEM+   G   
Sbjct: 250 PATHFMTNDDIMAQATAGIEGELKERLAELENDGKLLEAQRLKQRTTYDLEMMREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D LL VDESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRWMDGRQAGEPPYTLLDFFPKDFLLVVDESHVTMPQVRGMYNGDRARKQQLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E        I +SATPG +E EQ    +V+QIIRPTGL+DP ++
Sbjct: 370 GFRLPSALDNRPLKLNEVEQHINQVIYMSATPGPYEAEQTDH-VVQQIIRPTGLLDPTID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+YL +  I+V Y+HS++KTLE
Sbjct: 429 VRPIMGQMDDLVGEINQRIEKNERTFVTTLTKKMAEDLTDYLKDLGIKVAYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RDLRLGK+DVLVGINLLREG+DIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTEIMRDLRLGKYDVLVGINLLREGIDIPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD++T S+Q A+DET RRR+ Q+ +NK+H I P ++ + I ++I      D
Sbjct: 549 NSHGSVIMYADSVTDSMQAAMDETARRRQIQIAYNKEHGITPTTIIKPIRDLIAVSKKND 608

Query: 741 AATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            A       A     ++K+  +  +  L  +M  AA  L+FE+AA +RD I  +K+
Sbjct: 609 NAGEKDDFVASDFEDMTKEDQEKLIARLEDEMRAAAKKLDFEQAASLRDTIMDMKT 664


>gi|326798149|ref|YP_004315968.1| UvrABC system protein B [Sphingobacterium sp. 21]
 gi|326548913|gb|ADZ77298.1| UvrABC system protein B [Sphingobacterium sp. 21]
          Length = 675

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/674 (50%), Positives = 487/674 (72%), Gaps = 24/674 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI QL++G+ + E  Q LLGVTGSGKTFT+A VI   QRP ++++
Sbjct: 3   FTISSEYVPTGDQPEAIRQLVEGVEAGEHYQTLLGVTGSGKTFTIANVIAQTQRPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAV YFVSYYDYYQPEAY+  ++TYIEK+  IN++I+++R 
Sbjct: 63  HNKTLAAQLYGEMKQFFPENAVNYFVSYYDYYQPEAYIAHSNTYIEKDLQINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             T +L+  R D +VVSS+SCIYG+G+ E +S+ + +  +G ++ +   L  LV+  Y R
Sbjct: 123 RTTSALMSGRRDIVVVSSISCIYGMGNPEDFSRSVFRFGVGTTISRNAFLHRLVEILYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD++++FP++++D A+R++ FG++IEE+S   P++G+ +  +ET+ +
Sbjct: 183 TTADFKRGTFRVKGDTVDVFPAYMDD-AYRITFFGDEIEELSVIDPVSGKTLDKMETLAL 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VTP+     ++  I++EL  R  +L K+GR+LEA+RLE+R+ YDLEM+   G C
Sbjct: 242 FPANLFVTPKEKFTQSLWAIQDELVQRKEQLVKDGRMLEAKRLEERVNYDLEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GR PG  P  L +Y P+D L+ +DESHVT+PQI  MY GD  RK +L E
Sbjct: 302 SGIENYSRFFDGRQPGMRPFCLLDYFPDDYLMVIDESHVTVPQIRAMYGGDRSRKISLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL F+E+  + P TI VSATPG +EL++ +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAALDNRPLNFQEFESMAPQTIYVSATPGDYELQKTEGVVVEQVIRPTGLLDPTI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR    QV+D+ DE++   ++G R+L+T LTKRM+E+LT+Y+    I+VRY+HSE+KTL
Sbjct: 422 EIRPVVNQVDDLLDEVDKVTKEGGRVLVTTLTKRMSEELTKYMSRLGIKVRYIHSEIKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAA
Sbjct: 482 ERVEILRGLRLGEFDVLVGINLLREGLDLPEVTLVAILDADKEGFLRSQTSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIME----- 731
           RN   +VI+YAD+IT S++  IDET RRREKQ+++N++H I P++V   +E IME     
Sbjct: 542 RNDRGRVIMYADSITDSMRATIDETNRRREKQIKYNEEHGIVPRTVGKSREAIMEQTSVA 601

Query: 732 ---------VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                     +DP    D A++ ++ D     +SK + +  + + ++ M  AA +++F +
Sbjct: 602 DFKGGAAKAYVDP----DPASS-VAADPVVQYMSKAQLQKAIDTAKRDMERAAKDMDFLQ 656

Query: 783 AARIRDEIKRLKSS 796
           AA++RDE+  L+ +
Sbjct: 657 AAKLRDEMFALEKT 670


>gi|242279306|ref|YP_002991435.1| excinuclease ABC subunit B [Desulfovibrio salexigens DSM 2638]
 gi|242122200|gb|ACS79896.1| excinuclease ABC, B subunit [Desulfovibrio salexigens DSM 2638]
          Length = 668

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/657 (52%), Positives = 462/657 (70%), Gaps = 3/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY   GDQP A+ QL++ I    + Q+LLG TG+GKTF MA VI+ + RP +VMA
Sbjct: 5   FELVSDYTLKGDQPEAVKQLVENIKHGVQDQILLGATGTGKTFAMANVIKELNRPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL++EFK  FP+NAVEYFVSYYDYYQPEAY+P +DTYIEK+SSIN+ ID++RH
Sbjct: 65  PNKTLAAQLFNEFKALFPNNAVEYFVSYYDYYQPEAYLPHSDTYIEKDSSINDDIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D ++V+SVSCIYG+GS E Y++MI+ ++ G  +  ++L+  LV+ QY+R 
Sbjct: 125 SATHALLTRRDVLIVASVSCIYGLGSPEFYAKMIIPVEEGQELSMEKLMDKLVEVQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD IEI P++  + A R+  FG++I+ I E  PLTG+         IY
Sbjct: 185 DYDFHRGTFRVRGDVIEIIPAYAREQALRIEFFGDEIDSILETDPLTGEVTGRRRKTVIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+V+ +  L  A + I+ EL   L   +KE +L+EAQR+EQR  YDLEM+E  G C 
Sbjct: 245 PASHFVSDQDNLERAREDIRNELAETLTLYKKENKLIEAQRIEQRTMYDLEMIEEIGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  GE P TL  Y P+D LLF+DESH+ +PQ+  MY GD  RK TL  +
Sbjct: 305 GIENYSRHLDGRKEGEAPATLIHYFPDDFLLFMDESHIAVPQVGAMYNGDRSRKTTLVNF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+      T+ VSATPG WE+E+ QG++VEQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLCFDEFLDKIGQTVYVSATPGPWEMERAQGLVVEQIIRPTGLLDPEIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  E     ++G R+L+T LTKRMAEDLTEY  +  +  +Y+HS++ T+E
Sbjct: 425 VRPVKGQMDDLLAECKEREKRGERVLITTLTKRMAEDLTEYFNQMGVEAKYLHSDIDTME 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ II+ LR G+F  LVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT GRAAR
Sbjct: 485 RMAIIQSLRAGEFVALVGINLLREGLDIPEVSLVAILDADKEGFLRSTRSLIQTFGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VILYAD +TKS++ AIDET RRR KQ+E+N+ H I PQ++ + +  ++  +  ++
Sbjct: 545 NAEGRVILYADNVTKSMRTAIDETYRRRAKQMEYNEAHGIVPQTIAKSLDNMLGTLYSDN 604

Query: 741 AATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            + + + I   D  +  L   K +  ++ L K M   A  L FE+AA +RD I+ L+
Sbjct: 605 WSGSEVKIAAEDVAEYGLDPAKMEKEVRKLEKDMRKYAAELEFEKAAELRDRIQVLR 661


>gi|237743581|ref|ZP_04574062.1| excinuclease ABC subunit B [Fusobacterium sp. 7_1]
 gi|229433360|gb|EEO43572.1| excinuclease ABC subunit B [Fusobacterium sp. 7_1]
          Length = 663

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/659 (52%), Positives = 480/659 (72%), Gaps = 16/659 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ ++Y P+GDQP AI  ++K I +  K Q+LLGVTGSGKTFT+A VIE +QRP+++
Sbjct: 4   NLFKIHSEYRPTGDQPTAINSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPSLI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID++
Sbjct: 64  IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     + +KEL+  LV  +Y 
Sbjct: 124 RNAATAALIYRRDVIIVASVSSIYGLGSPDTYRRMTIPIDKQTGISRKELIKRLVDLRYN 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377
           R D+   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQK++ N+E I
Sbjct: 184 RNDVAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLERI 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + Y+T     +  +K IK++LK+ + + E E +LLEAQRL+QR  YDLEM+   G
Sbjct: 243 VIYPATQYLTADDDKDRIIKEIKDDLKVEVKKFEDEKKLLEAQRLKQRTEYDLEMITEIG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSRYL G+NPGE P TLFEY P+D LLF+DESH+T+PQI GMY GD  RK +L
Sbjct: 303 YCKGIENYSRYLAGKNPGETPDTLFEYFPKDFLLFIDESHITVPQIRGMYNGDRARKESL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E GFRL + +DNRPLRFEE+      T+ +SATPG +ELE     I EQ+IRPTG+VDP
Sbjct: 363 VENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFELEVSDNHIAEQLIRPTGIVDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR  + QV+D+ DEI   A +  R+L+T LTK++AE+LTEY  E  ++V+YMHS++ 
Sbjct: 423 EIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTIGR
Sbjct: 483 TLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  ++I+P+S+ ++I        
Sbjct: 543 AARNVEGRVILYADIMTDSMKEAIMETERRRKIQKEYNAYNHIDPKSIVKEIA------- 595

Query: 738 LEDAATTNISIDAQQLSLSKK--KGKAHLK----SLRKQMHLAADNLNFEEAARIRDEI 790
            ED    +  I+ ++   +KK  + KA ++     L K++    + L+FE+A  +RDE+
Sbjct: 596 -EDLINLDYGIEEKKFENNKKVFRNKADIEKEITKLEKKIKKLVEELDFEQAIILRDEM 653


>gi|329940834|ref|ZP_08290114.1| excinuclease ABC subunit B [Streptomyces griseoaurantiacus M045]
 gi|329300128|gb|EGG44026.1| excinuclease ABC subunit B [Streptomyces griseoaurantiacus M045]
          Length = 728

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/707 (50%), Positives = 486/707 (68%), Gaps = 45/707 (6%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++   + +  F++ + Y PSGDQP AIA+L + I + EK  +LLG TG+GK+ T A +IE
Sbjct: 12  VSTIERTVAPFEVVSPYRPSGDQPTAIAELERRIRAGEKDVVLLGATGTGKSATTAWMIE 71

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 72  KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 131

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +V L++GD +++ +LL 
Sbjct: 132 INEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVPLRVGDEIDRDQLLR 191

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ 
Sbjct: 192 RFVDIQYTRNDMAFARGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEI 250

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I + E + ++  SHY+     +  A+  I++EL+ RL EL+++G+LLE+QRL  R TYD+
Sbjct: 251 ISDDEQLYVFPASHYIAGPERMERAINGIEKELEERLAELDRQGKLLESQRLRMRTTYDI 310

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML   G+C  +ENYS +   R PG  P TL +Y PED LL +DESHVT+PQI  MY GD
Sbjct: 311 EMLRQIGTCSGVENYSMHFDDRGPGTAPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGD 370

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG++EL +  G  VEQIIR
Sbjct: 371 ASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYLSATPGTYELSRGDG-HVEQIIR 429

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+VR
Sbjct: 430 PTGLVDPEVVVKPTEGQIDDLVHEIRTRTEKDERVLVTTLTKKMAEDLTDYFVELGIQVR 489

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS
Sbjct: 490 YLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 549

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +N  H I+PQ +++KI 
Sbjct: 550 LIQTIGRAARNVSGQVHMYADKITPAMERAIDETNRRREKQIAYNTAHGIDPQPLRKKIN 609

Query: 731 EVIDPILLEDAATTNI-------------------SIDAQQLSLSKK----KGKA----- 762
           +++  I  ED  T  +                   ++   Q+    +    KG+A     
Sbjct: 610 DIVAQIAREDVDTEQLLGTGYRKGKDGKGARTPVPALANHQVPGGPEAPAGKGRAAKGKS 669

Query: 763 ---------------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                           ++ +  +M  AA +L FE AAR+RDE+  +K
Sbjct: 670 AETVPTDRPAAALAEQIEEMTTRMRAAAADLQFEIAARLRDEVSEMK 716


>gi|313891867|ref|ZP_07825472.1| excinuclease ABC, B subunit [Dialister microaerophilus UPII 345-E]
 gi|313119861|gb|EFR43048.1| excinuclease ABC, B subunit [Dialister microaerophilus UPII 345-E]
          Length = 700

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/654 (52%), Positives = 471/654 (72%), Gaps = 2/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P GDQP A+A L+KG++     Q+LLG TG+GKTF+MAKVIE++QRP ++++
Sbjct: 16  FKLEAPFGPKGDQPKAVASLVKGLNEGHWAQVLLGATGTGKTFSMAKVIESVQRPTLIIS 75

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ  SEFK+FFP+NAV YFVSYYDY+QPE+Y+P+TDTYI K+SS NE+IDR+RH
Sbjct: 76  PNKTLAAQTASEFKDFFPNNAVYYFVSYYDYFQPESYIPQTDTYIAKDSSRNEEIDRLRH 135

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G  E YS M + L+ G+ + + E++  LV  QY R 
Sbjct: 136 SATMALFERRDVIIVASVSCIYGLGDPEDYSTMGLSLRPGEEISRDEIIEKLVNMQYLRN 195

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD++++FP+   +   R+ MFG++I+ ++EF  ++G+ +     I I+
Sbjct: 196 DLNFTRDTFRVRGDTLDVFPASSNNTGVRIEMFGDEIDRLTEFDIVSGETVSERNHIGIF 255

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    +  A++ I+EEL  RL  L ++ RLLEAQRLEQR  YDLEM++  G C 
Sbjct: 256 PASHYVTTSDKMKRAVQTIEEELAERLKILREQDRLLEAQRLEQRTNYDLEMMQEIGYCS 315

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++ R  GEPP +L +Y P+D L+ +DESHVT+PQ+  MY GD  RK TL +Y
Sbjct: 316 GIENYSRHMSQRKAGEPPYSLLDYFPDDFLIMIDESHVTVPQLRAMYNGDRSRKTTLVDY 375

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +E+   Q  + EQIIRPTGL+DP VE
Sbjct: 376 GFRLPSALDNRPLTFDEFTERINQVIYVSATPGPYEM-GVQTNLAEQIIRPTGLLDPSVE 434

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++DV  EI        R+L+T LTK+MAEDLT+YL + +I+VRY+HS++ T+E
Sbjct: 435 VRPIEGQIDDVISEIRKRKDCNERVLITTLTKKMAEDLTDYLMDADIKVRYLHSDIATIE 494

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLR G FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+TS+IQ IGRAAR
Sbjct: 495 RAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVIILDADKEGFLRSETSMIQVIGRAAR 554

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S++ AI+ET RRRE Q ++N +HNI P ++++++ ++I+   LE+
Sbjct: 555 NARGHVIMYADRITDSMKYAIEETERRREIQKKYNIEHNIIPHTIQKRVKDLINLTKLEE 614

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +     +++ + +LS +     +K + K M  AA+ + FEEAA  RD++  LK
Sbjct: 615 KSVA-YELNSDKRNLSDEDLFKQMKRVEKDMKKAAELMEFEEAALWRDKLSELK 667


>gi|170016742|ref|YP_001727661.1| excinuclease ABC, B subunit [Leuconostoc citreum KM20]
 gi|169803599|gb|ACA82217.1| excinuclease ABC, B subunit [Leuconostoc citreum KM20]
          Length = 668

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/660 (51%), Positives = 473/660 (71%), Gaps = 6/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI+QL+ GI++  K Q+LLG TG+GKTFT++ VI+ +++P +V++
Sbjct: 10  FEVVSKYQPTGDQPRAISQLVSGINAGVKEQILLGATGTGKTFTISNVIKTVKKPTLVLS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S++N++ID++R+
Sbjct: 70  HNKTLAGQLYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNDEIDQLRN 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D IVV+SVS I+G+G    Y + ++ L++G+   + +L+  L+  Q+ R 
Sbjct: 130 SATSSLLSRRDVIVVASVSSIFGLGDPHQYQEHVINLRVGNEYGRDQLMRDLIGVQFTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG+FRV GD +EIFP+  ++VA R+  FG++I+ I E   LTG+     + + IY
Sbjct: 190 DIDFHRGSFRVRGDIVEIFPASEDEVALRIEFFGDEIDRIREINALTGETASERDFVSIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T    +  A+  I++E+  ++ + E+EG+LLEAQR++QR  YDL MLE  G   
Sbjct: 250 PAKHFMTDDNQMQRALNGIRQEMAAQVTKFEQEGKLLEAQRIKQRTEYDLAMLEEMGFVG 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ PED L+ VDESHVT+PQ+ GM+ GD  RK TL  Y
Sbjct: 310 GIENYSRWMDGRQAGEPPFTLLDFFPEDFLIIVDESHVTMPQVRGMFNGDRARKETLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+  E+       I +SATPG +ELE+  +  I +QIIRPTGL+DP V
Sbjct: 370 GFRLPSALDNRPLKLPEFEKHVNQIIYMSATPGDYELERVTKDHIAQQIIRPTGLLDPEV 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EIN    +  R+ +T LTKRMAEDLT+YL    I+V Y+H+++KTL
Sbjct: 430 EVRPVMGQIDDLVGEINKRTDKNERVFITTLTKRMAEDLTDYLKNVGIKVAYLHADIKTL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIRDLRLGK+DVL+GINLLREG+D+PE  LVAILDADKEGFLR+  SLIQTIGRAA
Sbjct: 490 ERTEIIRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNPRSLIQTIGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VI+YAD++TKS+Q A+DET RRRE Q+++N  H+I P ++K+ I E I      
Sbjct: 550 RNANGHVIMYADSVTKSMQEAMDETARRREIQMQYNTVHDIVPTTIKKDIRERISVRTET 609

Query: 740 DAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D      +ID  Q++   L + + +A +K++  QM  AA  LNFEEAA++RD +  LK+S
Sbjct: 610 DGGAE--TIDLTQVAFRDLPQDEQQAIIKNMESQMKSAAKALNFEEAAQLRDSVMSLKAS 667


>gi|170078851|ref|YP_001735489.1| excinuclease ABC subunit B [Synechococcus sp. PCC 7002]
 gi|169886520|gb|ACB00234.1| excinuclease ABC, B subunit [Synechococcus sp. PCC 7002]
          Length = 673

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/666 (52%), Positives = 471/666 (70%), Gaps = 18/666 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++   + P+GDQP AIA+L++ + S+ K Q LLG TG+GKTFTMA VI  MQ+P +V
Sbjct: 7   VLFRLHAPFEPTGDQPQAIAKLVQSLASQAKYQTLLGATGTGKTFTMAAVIAQMQKPTLV 66

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P TDTYIEK +SIN++ID +
Sbjct: 67  LAHNKTLAAQLCNELRQFFPYNAVEYFISYYDYYQPEAYIPVTDTYIEKTASINDEIDML 126

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSATRSL ER D IVV+S+SCIYG+G    Y +  + LK+G+ ++Q+ +L  LV  QY 
Sbjct: 127 RHSATRSLFERKDVIVVASISCIYGLGIPSEYLKAAISLKVGEELDQRAVLRQLVTVQYN 186

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D  + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ +++++ + 
Sbjct: 187 RNDTDLSRGNFRVKGDILEIVPAY-EDRVIRVEFFGDEIDAIRLLDPVTGEILQSLDQVN 245

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY   H+VTP+  L  A + IK EL  +L  LE E +LLEAQRL+QR +YDLE+L+  G 
Sbjct: 246 IYPARHFVTPQEQLAIACEQIKAELDSQLTVLEAENKLLEAQRLKQRTSYDLELLQEVGY 305

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  +ENYSR+L GR  G PP  L +Y PED LL VDESHVT+PQI GMY GD  RK  L 
Sbjct: 306 CNGVENYSRFLAGREAGSPPECLIDYFPEDWLLVVDESHVTVPQIRGMYNGDQARKKVLI 365

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS  DNRPL+ EE+       + VSATPG+WE+EQ +  ++EQ+IRPTG+VDP 
Sbjct: 366 DHGFRLPSAADNRPLKSEEFWQKVNQCVFVSATPGNWEIEQSEARVIEQVIRPTGVVDPE 425

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +++R    QV+D+  EI    +   R+L+T LTKRMAEDLT+Y  ++ + V+Y+HSE+K+
Sbjct: 426 IDVRPTDGQVDDLLGEIRQREKLKERVLITTLTKRMAEDLTDYFSDQGVAVQYLHSEIKS 485

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ERIEI++ LR G+FDVL+G+NLLREGLD+PE  LVAI+DADKEGFLR++ SLIQTIGRA
Sbjct: 486 IERIEILQALRKGEFDVLIGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGRA 545

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           AR+V  + ILYAD +T S+  AI ET RRR  Q+ +NKKHNI PQ +K++    I   L 
Sbjct: 546 ARHVRGQAILYADNLTDSMAKAIAETERRRVIQIAYNKKHNITPQPIKKRDENAILSFL- 604

Query: 739 EDAATTNIS--IDAQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                 +IS  ++ QQL         +  +K    +K L +QM  AA NL FE+AA +RD
Sbjct: 605 ------DISRRLNTQQLQQVVEHMEEVPLEKIPDVIKQLEEQMKEAAKNLEFEQAALLRD 658

Query: 789 EIKRLK 794
           +IK+L+
Sbjct: 659 QIKKLR 664


>gi|126701035|ref|YP_001089932.1| excinuclease ABC subunit B [Clostridium difficile 630]
 gi|254977034|ref|ZP_05273506.1| excinuclease ABC subunit B [Clostridium difficile QCD-66c26]
 gi|255094361|ref|ZP_05323839.1| excinuclease ABC subunit B [Clostridium difficile CIP 107932]
 gi|255102615|ref|ZP_05331592.1| excinuclease ABC subunit B [Clostridium difficile QCD-63q42]
 gi|255308441|ref|ZP_05352612.1| excinuclease ABC subunit B [Clostridium difficile ATCC 43255]
 gi|255316114|ref|ZP_05357697.1| excinuclease ABC subunit B [Clostridium difficile QCD-76w55]
 gi|255518775|ref|ZP_05386451.1| excinuclease ABC subunit B [Clostridium difficile QCD-97b34]
 gi|255651953|ref|ZP_05398855.1| excinuclease ABC subunit B [Clostridium difficile QCD-37x79]
 gi|306521702|ref|ZP_07408049.1| excinuclease ABC subunit B [Clostridium difficile QCD-32g58]
 gi|115252472|emb|CAJ70315.1| Excinuclease ABC subunit B [Clostridium difficile]
          Length = 656

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/655 (53%), Positives = 480/655 (73%), Gaps = 7/655 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++D+ P+GDQP AI  ++  I+  EK   LLGVTGSGKTFTMA +I+ +++P ++MA
Sbjct: 3   FKIKSDFKPTGDQPEAIKSIVDSINRNEKFSTLLGVTGSGKTFTMANIIQQVKKPTLIMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV  +DTYIEK++SIN++ID++RH
Sbjct: 63  HNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT S+LER D I++SSVSCIYG+G  + Y ++++ ++ G   ++ +++  L++ QY+R 
Sbjct: 123 SATASILERRDTIIISSVSCIYGLGDPKDYKELMLSIRPGMQRDRDDVIKRLIEIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++ A R+  FG++++ I+E   +TG+ +     + I+
Sbjct: 183 DINFTRGTFRVRGDILEIFPASNDEKAIRIEFFGDEVDRITEIDYVTGKIVGTRNHVVIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    +  A+  I+ EL+ ++   ++  RLLEAQR+EQR  YD+EML+  G CQ
Sbjct: 243 PASHYVTTPERIEKAIVEIENELQEQIKFFKENDRLLEAQRIEQRTKYDIEMLKEIGFCQ 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++TGR+ GE P TL ++ P+D L+ VDE+HVTIPQ+ GMY GD  RK +L E 
Sbjct: 303 GIENYSRHITGRSEGERPYTLMDFFPDDYLIIVDEAHVTIPQVRGMYAGDRSRKTSLIEN 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       + VSATPG +E++  +  I EQIIRPTGL+DP VE
Sbjct: 363 GFRLPSALDNRPLNFQEFEGNINQMLFVSATPGPYEIQHSE-TIAEQIIRPTGLLDPIVE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT YL E  I+V+Y+HS++ TLE
Sbjct: 422 VRPINNQIDDLVGEITKTIEKNERVLITTLTKKMSEDLTNYLKEIGIKVKYLHSDIVTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLGKFDVLVGINLLREGLDIPE  L+AILDADKEGFLRS+T+LIQTIGRAAR
Sbjct: 482 RTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETALIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N N +VI+YAD IT S+Q AIDET RRR+ Q  +N++HNI P+++++ I + I+   + E
Sbjct: 542 NENGRVIMYADRITDSMQNAIDETKRRRDIQNLYNEEHNIIPKTIQKNIRDSIEATKVAE 601

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +     IS D       K + +A++  L+ +M  AA NL FE AA +RD++K+L+
Sbjct: 602 EEVVYGIS-DTD----DKDEIRANIDKLKSEMMEAAQNLQFERAAELRDKVKQLE 651


>gi|118587561|ref|ZP_01544985.1| excinuclease ABC, B subunit [Oenococcus oeni ATCC BAA-1163]
 gi|118432012|gb|EAV38754.1| excinuclease ABC, B subunit [Oenococcus oeni ATCC BAA-1163]
          Length = 673

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/665 (52%), Positives = 472/665 (70%), Gaps = 17/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL++G++   K Q+LLG TG+GKTFT++ VI ++ +P ++++
Sbjct: 11  FKLHSNYQPTGDQPTAINQLIEGVNKGTKEQVLLGATGTGKTFTISNVIASVNKPTLILS 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++R+
Sbjct: 71  HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRN 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL RND IVV+SVS I+G+G    Y   ++ L+ GD   +  L+  L+  QY R 
Sbjct: 131 SATSSLLSRNDTIVVASVSSIFGLGDPHQYKDHVISLRTGDEYGRNNLMRHLIDIQYVRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++ A RV  FG++I+ I E  PLTG+ +   + I I+
Sbjct: 191 DIDFARGTFRVRGDVVEIFPASEDEKAIRVEFFGDEIDRIREINPLTGEILLEDDFISIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T    L +A   I++E++  + + E++G+LLEAQRL+QR  YD+EML   G   
Sbjct: 251 PAKHFMTNDNILKSATDGIRQEMEECVKKFEQQGKLLEAQRLKQRTEYDIEMLLEMGYTN 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+DSLL VDESHVT+PQ+ GMY GD  RK TL +Y
Sbjct: 311 GIENYSRWMDGRKQGEPPFTLLDFFPKDSLLVVDESHVTMPQVRGMYNGDQARKKTLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+  E+       I +SATPG +EL +     I EQIIRPTGL+DP +
Sbjct: 371 GFRLPSALDNRPLKLSEFEQHVNQVIYMSATPGDYELSRVTPDNIAEQIIRPTGLLDPEI 430

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  R Q++D+  EIN  A +  R+ +T LTKRM+EDLT YL E  ++V+Y+HS++KTL
Sbjct: 431 EVRPIRGQIDDLLGEINARAAKNERVFITTLTKRMSEDLTTYLKESGVKVQYLHSDIKTL 490

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIR+LRLGKFD LVGINLLREGLD+PE  LVAILDADK+GFLR++ SLIQTIGRAA
Sbjct: 491 ERTEIIRNLRLGKFDALVGINLLREGLDVPEVSLVAILDADKDGFLRNERSLIQTIGRAA 550

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VI+YAD +T+++Q AIDET RRR  Q+++N++HNI P ++K++I   I      
Sbjct: 551 RNSNGHVIMYADVVTENMQKAIDETARRRRIQIKYNEEHNITPTTIKKEIRGSI------ 604

Query: 740 DAATTNI-SIDAQQLSLSK--------KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A +  + S D  +L L+K        K  K  + +L +QM  AA  ++FEEAA++RD I
Sbjct: 605 -AISHEVQSADESKLDLTKVAFADMPIKDQKEMVGNLTEQMKSAAKRMDFEEAAQLRDSI 663

Query: 791 KRLKS 795
             LK+
Sbjct: 664 LELKT 668


>gi|260584667|ref|ZP_05852413.1| excinuclease ABC subunit B [Granulicatella elegans ATCC 700633]
 gi|260157690|gb|EEW92760.1| excinuclease ABC subunit B [Granulicatella elegans ATCC 700633]
          Length = 658

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/656 (53%), Positives = 472/656 (71%), Gaps = 6/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L+ GI   +  Q LLG TG+GKTFT+A VI+ + +P +V+A
Sbjct: 4   FELHSPYQPQGDQPQAIKELVSGILEGKHEQTLLGATGTGKTFTIANVIKEVNKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEKESS+N++ID++RH
Sbjct: 64  HNKTLAGQLYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKESSVNDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D IVV+SVSCIYG+ + E+Y + ++ L+ G  VE+ +LL+ LV+ Q++R 
Sbjct: 124 SATSALLERRDVIVVASVSCIYGLVNPENYREHVLSLREGMEVERNQLLTRLVEMQFERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG+FRV GD ++IFP   +  A RV  FG++IE + E   LTG+    VE + I+
Sbjct: 184 DIDFRRGSFRVRGDIVDIFPPGHDSSAIRVEFFGDEIEALKEIDVLTGEVKATVEHVPIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+V+    ++ A+  IK ELK RL EL +  +LLEAQRLEQR  YD+EML   G C 
Sbjct: 244 PAAHFVSNEDEISRAVSTIKAELKERLEELRENNQLLEAQRLEQRTNYDIEMLLEMGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P TL ++ PED+L  VDESH+T+ QI  M+ GD  RK  L +Y
Sbjct: 304 GIENYSRHMDGRKPGEAPYTLLDFFPEDALYVVDESHITMSQIRAMFNGDRARKEQLIQY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+    P  I VSATPG +E+      + EQIIRPTGL+DP +E
Sbjct: 364 GFRLPSALDNRPLRFEEFEERIPQMIYVSATPGPYEMAHTP-TVTEQIIRPTGLLDPLIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+   ++  R+ +T LTK+M+EDLT+YL E  IRV+Y+HS++KTLE
Sbjct: 423 VRPINGQIDDLIREIHDRIEKNERVFITTLTKKMSEDLTDYLKEVGIRVKYLHSDIKTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 483 RTEIIRNLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N N +VI+YAD IT S++ AIDET RRR  Q  +NK+H I P+++ + I ++I     +E
Sbjct: 543 NANGRVIMYADKITDSMKYAIDETNRRRSIQEAYNKEHGITPKTIHKNIRDLIAITHAVE 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              TT    D +Q+++ +++    +  L  +M  AA +LNFE+AA++RD I  L++
Sbjct: 603 KEETT--QTDFKQMTVQQRREAIEVMEL--EMRAAAKDLNFEKAAQLRDMILELRA 654


>gi|239940423|ref|ZP_04692360.1| excinuclease ABC subunit B [Streptomyces roseosporus NRRL 15998]
 gi|239986904|ref|ZP_04707568.1| excinuclease ABC subunit B [Streptomyces roseosporus NRRL 11379]
 gi|291443854|ref|ZP_06583244.1| excinuclease ABC subunit B [Streptomyces roseosporus NRRL 15998]
 gi|291346801|gb|EFE73705.1| excinuclease ABC subunit B [Streptomyces roseosporus NRRL 15998]
          Length = 713

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/697 (51%), Positives = 480/697 (68%), Gaps = 52/697 (7%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AIA+L + I + EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 14  FEVVSPYQPSGDQPTAIAELERRIRADEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE+++R+RH
Sbjct: 74  PNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ + Y   +VQLK+G+ +++ +LL   V+ QY R 
Sbjct: 134 SATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVQLKVGEEIDRDQLLRRFVEMQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ I    T+ ++
Sbjct: 194 DLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIENLSTLHPLTGEIISEDPTVHVF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I++EL+ RL ELEK+G++LEAQRL  R TYD+EML   G+C 
Sbjct: 253 PASHYVAGPERMERAVTGIEQELEQRLAELEKQGKMLEAQRLRMRTTYDIEMLRQIGTCS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS +   R PG  P TL +Y P+D LL +DESHVT+PQI  MY GD  RK TL ++
Sbjct: 313 GVENYSMHFDDRAPGTAPNTLLDYFPDDFLLVLDESHVTVPQIGAMYEGDASRKRTLVDH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++EE+      T+ +SATPG +EL +  G  VEQIIRPTGLVDP V 
Sbjct: 373 GFRLPSAMDNRPLKWEEFLKRIDQTVYLSATPGKYELSRGDG-FVEQIIRPTGLVDPEVV 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+VRY+HS+V TL 
Sbjct: 432 VKPTEGQIDDLVHEIRKRTERDERVLVTTLTKKMAEDLTDYFLELGIQVRYLHSDVDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADK+GFLRS TSLIQTIGRAAR
Sbjct: 492 RIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD +T +++ AIDET RRREKQ+ +N +  I+PQ +++KI +++  I  E+
Sbjct: 552 NVSGQVHMYADKVTPAMEQAIDETNRRREKQIAYNTERGIDPQPLRKKINDIVATIAREE 611

Query: 741 AATTNISIDAQQ-LSLSKKKGK-------------------------------------- 761
                  ID +Q L    ++GK                                      
Sbjct: 612 -------IDTEQLLGTGYRQGKETKAPVPALGGKAARGGAKGAAKGKAAKSGAVTGDRPA 664

Query: 762 ----AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 ++ +  +M  AA +L FE AAR+RDE+  LK
Sbjct: 665 TELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELK 701


>gi|237741137|ref|ZP_04571618.1| excinuclease ABC subunit B [Fusobacterium sp. 4_1_13]
 gi|229430669|gb|EEO40881.1| excinuclease ABC subunit B [Fusobacterium sp. 4_1_13]
          Length = 663

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/659 (52%), Positives = 481/659 (72%), Gaps = 16/659 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + Y P+GDQPAAI  ++K I +  K Q+LLGVTGSGKTFT+A VIE +QRPA++
Sbjct: 4   NLFKIHSYYKPTGDQPAAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPALI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID++
Sbjct: 64  IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     + +KEL+  L+  +Y 
Sbjct: 124 RNAATAALIHRRDVIIVASVSSIYGLGSPDTYRKMTIPIDKKTGISRKELMKKLIALRYD 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377
           R DI   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQK++ N+E I
Sbjct: 184 RNDIAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLERI 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + Y+T     +  +K IK++LK+ + + E + +LLEAQRL+QR  YDLEM+   G
Sbjct: 243 VIYPATQYLTADNDKDRIIKEIKDDLKVEVKKFEDDKKLLEAQRLKQRTEYDLEMITEIG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSRYL+G+NPGE P TLFEY P+D +LF+DESH+T+PQ+ GMY GD  RK +L
Sbjct: 303 YCKGIENYSRYLSGKNPGETPDTLFEYFPKDFILFIDESHITVPQVRGMYNGDRARKESL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E GFRL + +DNRPLRFEE+      T+ +SATPG +E+E     I EQ+IRPTG+VDP
Sbjct: 363 VENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNHIAEQLIRPTGIVDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR  + QV+D+ DEI   A +  R+L+T LTK++AE+LTEY  E  ++V+YMHS++ 
Sbjct: 423 EIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTIGR
Sbjct: 483 TLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  ++I+P+S+ ++I        
Sbjct: 543 AARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYNHIDPKSIVKEIA------- 595

Query: 738 LEDAATTNISIDAQQLSLSKK--KGKAHLK----SLRKQMHLAADNLNFEEAARIRDEI 790
            ED    +  I+ ++   +KK  + KA ++     L K++    + L+FE+A  +RDE+
Sbjct: 596 -EDLINLDYGIEEKKFENNKKVFRNKADIEKEITKLEKKIKKLVEELDFEQAIVLRDEM 653


>gi|42518788|ref|NP_964718.1| excinuclease ABC subunit B [Lactobacillus johnsonii NCC 533]
 gi|81832263|sp|Q74K90|UVRB_LACJO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|41583074|gb|AAS08684.1| excinuclease ABC subunit B [Lactobacillus johnsonii NCC 533]
          Length = 671

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/655 (52%), Positives = 457/655 (69%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G    EK Q+L G TG+GKTFTMA VI  + +P +V++
Sbjct: 10  FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
             T  L+ RND IVV+SVSCIYG+G    Y+  +V L  G  + +  LL  LV  QY R 
Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSLSEGQEISRDVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A+RV  FG++I+ I E   LTG+ I   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVDSLTGEVIGEREQVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFVTNEQIMERALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G+PP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL Q     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQTDH-KVEQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  E+N   ++  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIKGQIDDLVGEVNKRIERNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   L+QTIGRAAR
Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-LE 739
           N N KVI+YAD+IT S++ AID T RRR  Q++ NK+H I P+++ + I +VI      E
Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSE 608

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           D        D     L+KK+ +  +K+L  QM  AA  L+FEEAA +RD I  LK
Sbjct: 609 DKENKESFADLNFDELTKKQKQNMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLK 663


>gi|16804527|ref|NP_466012.1| excinuclease ABC subunit B [Listeria monocytogenes EGD-e]
 gi|47096081|ref|ZP_00233682.1| excinuclease ABC, B subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|116873853|ref|YP_850634.1| excinuclease ABC subunit B [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|224499846|ref|ZP_03668195.1| excinuclease ABC subunit B [Listeria monocytogenes Finland 1988]
 gi|224503270|ref|ZP_03671577.1| excinuclease ABC subunit B [Listeria monocytogenes FSL R2-561]
 gi|254828064|ref|ZP_05232751.1| uvrB [Listeria monocytogenes FSL N3-165]
 gi|254831088|ref|ZP_05235743.1| excinuclease ABC subunit B [Listeria monocytogenes 10403S]
 gi|254900373|ref|ZP_05260297.1| excinuclease ABC subunit B [Listeria monocytogenes J0161]
 gi|254913388|ref|ZP_05263400.1| UvrABC system protein B [Listeria monocytogenes J2818]
 gi|254937769|ref|ZP_05269466.1| uvrB [Listeria monocytogenes F6900]
 gi|284802927|ref|YP_003414792.1| excinuclease ABC subunit B [Listeria monocytogenes 08-5578]
 gi|284996068|ref|YP_003417836.1| excinuclease ABC subunit B [Listeria monocytogenes 08-5923]
 gi|21542281|sp|Q8Y4F5|UVRB_LISMO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|16411977|emb|CAD00567.1| excinuclease ABC (subunit B) [Listeria monocytogenes EGD-e]
 gi|47015542|gb|EAL06474.1| excinuclease ABC, B subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|116742731|emb|CAK21855.1| excinuclease ABC subunit B [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|258600448|gb|EEW13773.1| uvrB [Listeria monocytogenes FSL N3-165]
 gi|258610372|gb|EEW22980.1| uvrB [Listeria monocytogenes F6900]
 gi|284058489|gb|ADB69430.1| excinuclease ABC subunit B [Listeria monocytogenes 08-5578]
 gi|284061535|gb|ADB72474.1| excinuclease ABC subunit B [Listeria monocytogenes 08-5923]
 gi|293591394|gb|EFF99728.1| UvrABC system protein B [Listeria monocytogenes J2818]
          Length = 658

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/656 (53%), Positives = 471/656 (71%), Gaps = 5/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI QL+ G+    K Q LLG TG+GKTFT++ VI+ + +P +VMA
Sbjct: 5   FELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS   Y +M+V L++G  + + +LL  LV  QY R 
Sbjct: 125 SATAALFERRDVIIIASVSCIYGLGSPIEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++   R+  FG++IE I E   LTG+ I   E + I+
Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGEREHVSIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  IK EL+ RL  L  + +LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 245 PASHFVTRPDIMKKAIVNIKAELEDRLKVLRADNKLLEAQRLEQRTNYDLEMMEEMGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y P+D  + +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQIRGMFNGDQARKQMLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + +SATPG +ELE+   +I EQIIRPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEKNPDVI-EQIIRPTGLLDPIVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+ DEIN   ++  R+L+T LTK+M+EDLT YL E  ++V+Y+HSEVKTLE
Sbjct: 424 IRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG +DV+VGINLLREG+D+PE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P+++K++I  +I       
Sbjct: 544 NENGRVIMYADKMTDSMRNSIGETERRRKIQIEYNEKHGITPKTIKKEIRGIIAAT---S 600

Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA    ++    LS +SKK+    ++ +  +M  AA  L+FE AA +RD +  +K+
Sbjct: 601 AADEREAVKQHDLSKMSKKERDVFIEGMEHEMKEAAKALDFERAAELRDALLEIKA 656


>gi|253575922|ref|ZP_04853256.1| excinuclease ABC, B subunit [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251844716|gb|EES72730.1| excinuclease ABC, B subunit [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 664

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/655 (54%), Positives = 474/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y   GDQP A+ QL++G+ + +K Q LLG TG+GKTFT+A  I  + RP +V+A
Sbjct: 11  FELISEYTLQGDQPEAVRQLVEGVLAGKKHQTLLGATGTGKTFTIANTIAKLGRPTLVIA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP N+V+YFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID++RH
Sbjct: 71  HNKTLAAQLASEFREFFPKNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSSINEEIDKLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y  +++ L++G    + ++LS LV  QY+R 
Sbjct: 131 SATSALFERRDVIIVASVSCIYGLGSPMEYRNLVLSLRVGMEKPRNQILSRLVDIQYQRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +RGTFRV GD +EIFP+   + A RV  FG++IE I+E   LTG+ +   E + I+
Sbjct: 191 DINFVRGTFRVRGDVLEIFPASHGEKAIRVEFFGDEIERITEIDVLTGELVGEREHVAIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT   T+  A++ I+ EL+ RL E   +G+LLEAQRLEQR  YD+EM+   G C 
Sbjct: 251 PASHFVTQEETMKIALQNIERELEERLAEFRAQGKLLEAQRLEQRTRYDIEMMREVGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  LT R  G  P TL +Y P+D L+ +DESHVT+PQI  MY GD  RK  L E+
Sbjct: 311 GIENYSGPLTFRERGATPYTLLDYFPDDMLIVIDESHVTLPQIRAMYNGDQARKNVLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       I VSATPG +ELE C   +VEQIIRPTGL+DP +E
Sbjct: 371 GFRLPSALDNRPLRFEEFEEKATQLIYVSATPGPYELEHCD-TMVEQIIRPTGLLDPVIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI     +  R+L+T LTK+MAEDLT+YL E  I+VRY+HS++KTLE
Sbjct: 430 VRPTKGQIDDLIGEIRDRIAKDERVLVTTLTKKMAEDLTDYLKEVGIKVRYLHSDIKTLE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ I+RDLRLG F VL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RMSILRDLRLGTFHVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +V++YADTIT+S+  AI ET RRR+ Q+ +N+KH I PQ++++K+ +VI+   + +
Sbjct: 550 NADGRVLMYADTITESMDKAIKETERRRKIQIAYNEKHGITPQTIRKKVRDVIEATKVAE 609

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +    ++ DA+   +SK+  +A +  L  +M  AA NL FE AA +RD I  L++
Sbjct: 610 SKADYLA-DAKG-KMSKRDREAMIARLEAEMKEAAKNLQFERAAELRDAILELRA 662


>gi|296119666|ref|ZP_06838224.1| excinuclease ABC subunit B [Corynebacterium ammoniagenes DSM 20306]
 gi|295967549|gb|EFG80816.1| excinuclease ABC subunit B [Corynebacterium ammoniagenes DSM 20306]
          Length = 695

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/669 (53%), Positives = 481/669 (71%), Gaps = 7/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AIA+L   ++  E+  +L+G TG+GK+ T A +IE  QRP +VMA
Sbjct: 28  FEVISEYEPAGDQPTAIAELDHRLNEGERDVVLMGATGTGKSATAAWLIEKQQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E K   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH
Sbjct: 88  PNKTLAAQLANELKQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VVSSVSCIYG+G+ +SY    V L I D VE+ +LL  LV  QY+R 
Sbjct: 148 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVLLHIDDEVERDQLLRLLVDIQYERN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+G  RGTFRV GD ++I P++ E+ A R+  FG+DI+ +   +P+TG  +  V+ ++I+
Sbjct: 208 DVGFTRGTFRVNGDIVDIIPAY-EERAVRIEFFGDDIDALYYIHPVTGDTLEQVDELRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A++ IKEEL  RL +LE  G+LLEAQRL  R  YDLEM+E  G C 
Sbjct: 267 PATHYVAGPERMEKAVQAIKEELAERLADLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG  P TL +Y PED L  +DESHVT+PQI GM+ GD  RK  L E+
Sbjct: 327 GIENYSRHMDGRGPGTAPATLMDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+      T+ +SATPG++E+    G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSAVDNRPLTFDEFEQRVGQTVYLSATPGNYEVAAAGGEYVEQVIRPTGLVDPKVT 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ DE+    ++  R+L+T LTKRMAEDLT+YL E  IRVRY+HS++ TL+
Sbjct: 447 VKPTKGQIDDLIDEVRERTKKNERVLVTTLTKRMAEDLTDYLLEHGIRVRYLHSDIDTLQ 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIE++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 507 RIELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739
           NV+ +VI+YAD +T+S++ AIDET RRR KQ+ +N++  ++PQ +++KI +++D +    
Sbjct: 567 NVSGEVIMYADKVTESMERAIDETERRRAKQIAYNEEMGLDPQPLRKKIADILDQVYENE 626

Query: 740 -DAATTNISI-DAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            D  +   SI D   +S ++  + ++ +  L +QM  AA  L FE A R+RDEI  LK  
Sbjct: 627 GDGESDPASIVDKPDVSTMAADEVQSLIDDLSQQMAAAARELKFELAGRLRDEIADLKKE 686

Query: 797 PYFQGLDDS 805
              +GL D+
Sbjct: 687 R--RGLKDA 693


>gi|326693263|ref|ZP_08230268.1| excinuclease ABC subunit B [Leuconostoc argentinum KCTC 3773]
          Length = 667

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/659 (51%), Positives = 471/659 (71%), Gaps = 7/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL++GI++  K Q+LLG TG+GKTFT++ VI+ +++P +V++
Sbjct: 10  FEVVSKYEPTGDQPKAIDQLVRGINAGVKEQILLGATGTGKTFTISNVIQRVKKPTLVLS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA Q+Y E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S++N++ID++R+
Sbjct: 70  HNKTLAGQIYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNDEIDQLRN 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL RND IVV+SVS I+G+G    Y + ++ L++G+   +++L+  L+  Q+ R 
Sbjct: 130 SATSSLLSRNDVIVVASVSSIFGLGDPHQYQEHVINLRVGNEYGREQLMRDLIDVQFTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  +++A RV  FG++I+ I E   LTG+ +   + + IY
Sbjct: 190 DIDFHRGTFRVRGDIMEIFPASEDEMALRVEFFGDEIDRIREINSLTGETVAERDFVAIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T    +  A+  I +E+  ++ + E EG+L+EAQR++QR  YDL MLE  G   
Sbjct: 250 PAKHFMTNDDQMRYALAGINDEMTAQVAKFEAEGKLIEAQRIKQRTEYDLAMLEEMGFVG 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGEPP TL ++ P+D L+  DESHVT+PQI GM+ GD  RK TL  Y
Sbjct: 310 GIENYSRWMDGRQPGEPPFTLLDFFPDDFLIVADESHVTMPQIRGMFNGDKARKETLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+  E+       I +SATPG +ELE+     + EQIIRPTGL+DP V
Sbjct: 370 GFRLPSALDNRPLKLPEFEQRVNQIIYMSATPGDYELERVTPDHVAEQIIRPTGLLDPEV 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EIN   ++  R+ +T LTKRMAEDLT+YL    ++V Y+H+++KTL
Sbjct: 430 EVRPVMGQIDDLVGEINQRVEKNERVFITTLTKRMAEDLTDYLKNVGLKVAYLHADIKTL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIRDLRLGK+DVL+GINLLREG+D+PE  LVAILDADKEGFLR+  SLIQTIGRAA
Sbjct: 490 ERTEIIRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNPRSLIQTIGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VI+YAD +T+S+Q AIDET RRRE QL++N  H I P ++K+ I ++I    + 
Sbjct: 550 RNANGHVIMYADKMTRSMQEAIDETARRREIQLQYNATHGITPMTIKKPIRDLIS---VR 606

Query: 740 DAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              TT   ID  Q++   L K + K  + +L  QM  AA  L+FEEAA++RD +  LK+
Sbjct: 607 TETTTGEKIDLTQVAFKDLPKDEQKNIIANLENQMKAAAKALDFEEAAQLRDSVMSLKA 665


>gi|304314599|ref|YP_003849746.1| excinuclease ABC, subunit B [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588058|gb|ADL58433.1| excinuclease ABC, subunit B [Methanothermobacter marburgensis str.
           Marburg]
          Length = 647

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/656 (54%), Positives = 474/656 (72%), Gaps = 14/656 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AI  L++GI++  + Q LLGVTGSGKTFT+A VIE +Q+P +V++
Sbjct: 3   FKLVSDYRPLGDQPKAIRSLVEGINAGMREQTLLGVTGSGKTFTIANVIEEVQKPTLVIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+ FFP NAVEYFVSYYD+YQPEAY+P+TDTYI+KE+SIN++IDRMRH
Sbjct: 63  HNKTLAAQLYEEFREFFPDNAVEYFVSYYDFYQPEAYIPQTDTYIDKEASINDEIDRMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R+D IVVSSVSCIYGIG+   Y +  + L++G S+ ++E+LSSLV  QY+R 
Sbjct: 123 SATQALLSRDDVIVVSSVSCIYGIGAPADYGEFTLHLEVGSSIGREEILSSLVSMQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD+IEI P H      R+ +FG++++ IS  + +TG++++ ++ I ++
Sbjct: 183 DVEFDRGQFRVRGDTIEINPIH-GTPPIRIELFGDEVDSISTVHRVTGKRLQKLDRITVF 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V P   L  A++ I+EEL+ RL EL  + +LLEAQRLEQR  +D+EML   G CQ
Sbjct: 242 PAKHFVIPEDRLQRAIESIEEELEDRLRELRAQNKLLEAQRLEQRTRFDIEMLREMGYCQ 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L+GR  GE P TL +Y P+D L  +DESHVT+PQI GMY GD  RK TL EY
Sbjct: 302 GIENYSMHLSGRKWGEKPNTLLDYFPDDFLTVIDESHVTVPQIRGMYNGDRARKETLVEY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPLRF+E+       I VSATPG +EL + Q  IVEQIIRPTGLVDP V 
Sbjct: 362 GFRLPSAKENRPLRFDEFQESINQVIYVSATPGKYELSRSQN-IVEQIIRPTGLVDPEVR 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + QV+D+  EI    + G R+L+T LTKRMAEDLT+Y     +RVRY+HSE+ TLE
Sbjct: 421 IRPVKGQVDDLLSEIRRRVELGQRVLVTTLTKRMAEDLTDYYSRVGVRVRYLHSEIDTLE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR G+FD LVG+NLLREGLD+PE  LVAILDAD+EGFLRS+TSLIQTIGRAAR
Sbjct: 481 RVEIIDDLRRGEFDCLVGVNLLREGLDLPEVSLVAILDADREGFLRSETSLIQTIGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +V++YAD +T +++ A++ T RRR+ Q+E+N++H I P+S +  +           
Sbjct: 541 NVNGQVLIYADRLTDAVKAAVETTNRRRKLQMEYNRRHGIKPRSTRRTL----------- 589

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                   + +   + + + +  +K L  +M  AA NL FE AAR+RD+I  LK S
Sbjct: 590 -REKKEKEEIKAEEIPRDELEVIIKDLEAEMREAARNLEFERAARLRDQIMSLKGS 644


>gi|30265192|ref|NP_847569.1| excinuclease ABC subunit B [Bacillus anthracis str. Ames]
 gi|47530708|ref|YP_022057.1| excinuclease ABC subunit B [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188002|ref|YP_031255.1| excinuclease ABC subunit B [Bacillus anthracis str. Sterne]
 gi|165869973|ref|ZP_02214630.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0488]
 gi|167635308|ref|ZP_02393623.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0442]
 gi|167640500|ref|ZP_02398763.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0193]
 gi|170688009|ref|ZP_02879222.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0465]
 gi|170707782|ref|ZP_02898233.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0389]
 gi|177652930|ref|ZP_02935257.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0174]
 gi|227817925|ref|YP_002817934.1| excinuclease ABC, B subunit [Bacillus anthracis str. CDC 684]
 gi|229124671|ref|ZP_04253852.1| UvrABC system protein B [Bacillus cereus 95/8201]
 gi|229602325|ref|YP_002869386.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0248]
 gi|254686407|ref|ZP_05150266.1| excinuclease ABC subunit B [Bacillus anthracis str. CNEVA-9066]
 gi|254724407|ref|ZP_05186191.1| excinuclease ABC subunit B [Bacillus anthracis str. A1055]
 gi|254735613|ref|ZP_05193320.1| excinuclease ABC subunit B [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744300|ref|ZP_05201980.1| excinuclease ABC subunit B [Bacillus anthracis str. Kruger B]
 gi|254755598|ref|ZP_05207631.1| excinuclease ABC subunit B [Bacillus anthracis str. Vollum]
 gi|254757053|ref|ZP_05209081.1| excinuclease ABC subunit B [Bacillus anthracis str. Australia 94]
 gi|81837855|sp|Q81X47|UVRB_BACAN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|30259869|gb|AAP29055.1| excinuclease ABC, B subunit [Bacillus anthracis str. Ames]
 gi|47505856|gb|AAT34532.1| excinuclease ABC, B subunit [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181929|gb|AAT57305.1| excinuclease ABC, B subunit [Bacillus anthracis str. Sterne]
 gi|164714296|gb|EDR19816.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0488]
 gi|167511543|gb|EDR86926.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0193]
 gi|167529351|gb|EDR92103.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0442]
 gi|170127339|gb|EDS96215.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0389]
 gi|170668118|gb|EDT18868.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0465]
 gi|172081705|gb|EDT66775.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0174]
 gi|227002808|gb|ACP12551.1| excinuclease ABC, B subunit [Bacillus anthracis str. CDC 684]
 gi|228658766|gb|EEL14425.1| UvrABC system protein B [Bacillus cereus 95/8201]
 gi|229266733|gb|ACQ48370.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0248]
          Length = 658

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|65317138|ref|ZP_00390097.1| COG0556: Helicase subunit of the DNA excision repair complex
           [Bacillus anthracis str. A2012]
          Length = 669

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 16  FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 75

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 76  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 135

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 136 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 195

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 196 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 255

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 256 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 315

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 316 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 375

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 376 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 434

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 435 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 494

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 495 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 554

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 555 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 614

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 615 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 667


>gi|47092775|ref|ZP_00230560.1| excinuclease ABC, B subunit [Listeria monocytogenes str. 4b H7858]
 gi|217963409|ref|YP_002349087.1| excinuclease ABC, B subunit [Listeria monocytogenes HCC23]
 gi|226225037|ref|YP_002759144.1| excinuclease ABC (subunit B) [Listeria monocytogenes Clip81459]
 gi|254825389|ref|ZP_05230390.1| excinuclease ABC [Listeria monocytogenes FSL J1-194]
 gi|254853509|ref|ZP_05242857.1| excinuclease ABC [Listeria monocytogenes FSL R2-503]
 gi|254932270|ref|ZP_05265629.1| excinuclease ABC [Listeria monocytogenes HPB2262]
 gi|255521889|ref|ZP_05389126.1| excinuclease ABC subunit B [Listeria monocytogenes FSL J1-175]
 gi|290892652|ref|ZP_06555644.1| excinuclease ABC [Listeria monocytogenes FSL J2-071]
 gi|300765012|ref|ZP_07075000.1| excinuclease ABC, B subunit [Listeria monocytogenes FSL N1-017]
 gi|47018863|gb|EAL09611.1| excinuclease ABC, B subunit [Listeria monocytogenes str. 4b H7858]
 gi|217332679|gb|ACK38473.1| excinuclease ABC, B subunit [Listeria monocytogenes HCC23]
 gi|225877499|emb|CAS06213.1| excinuclease ABC (subunit B) [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258606881|gb|EEW19489.1| excinuclease ABC [Listeria monocytogenes FSL R2-503]
 gi|290557712|gb|EFD91234.1| excinuclease ABC [Listeria monocytogenes FSL J2-071]
 gi|293583827|gb|EFF95859.1| excinuclease ABC [Listeria monocytogenes HPB2262]
 gi|293594632|gb|EFG02393.1| excinuclease ABC [Listeria monocytogenes FSL J1-194]
 gi|300514312|gb|EFK41371.1| excinuclease ABC, B subunit [Listeria monocytogenes FSL N1-017]
 gi|307572016|emb|CAR85195.1| excinuclease ABC, subunit B [Listeria monocytogenes L99]
 gi|328471293|gb|EGF42193.1| excinuclease ABC subunit B [Listeria monocytogenes 220]
 gi|332312919|gb|EGJ26014.1| UvrABC system protein B [Listeria monocytogenes str. Scott A]
          Length = 658

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/656 (53%), Positives = 471/656 (71%), Gaps = 5/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI QL+ G+    K Q LLG TG+GKTFT++ VI+ + +P +VMA
Sbjct: 5   FELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS   Y +M+V L++G  + + +LL  LV  QY R 
Sbjct: 125 SATAALFERRDVIIIASVSCIYGLGSPIEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++   R+  FG++IE I E   LTG+ I   E + I+
Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGEREHVSIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  IK EL+ RL  L  + +LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 245 PASHFVTRPDIMKKAIVNIKAELEDRLQVLRADNKLLEAQRLEQRTNYDLEMMEEMGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y P+D  + +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQIRGMFNGDQARKQMLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + +SATPG +ELE+   +I EQIIRPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEKNPDVI-EQIIRPTGLLDPIVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+ DEIN   ++  R+L+T LTK+M+EDLT YL E  ++V+Y+HSEVKTLE
Sbjct: 424 IRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG +DV+VGINLLREG+D+PE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P+++K++I  +I       
Sbjct: 544 NENGRVIMYADKMTDSMRNSIGETERRRKIQIEYNEKHGITPKTIKKEIRGIIAAT---S 600

Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA    ++    LS +SKK+    ++ +  +M  AA  L+FE AA +RD +  +K+
Sbjct: 601 AADEREAVKQHDLSKMSKKERDVFIEGMEHEMKEAAKALDFERAAELRDALLEIKA 656


>gi|16801694|ref|NP_471962.1| excinuclease ABC subunit B [Listeria innocua Clip11262]
 gi|21542285|sp|Q928A4|UVRB_LISIN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|16415169|emb|CAC97859.1| excinuclease ABC (subunit B) [Listeria innocua Clip11262]
          Length = 658

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/656 (53%), Positives = 472/656 (71%), Gaps = 5/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI QL+ G+    K Q LLG TG+GKTFT++ VI+ + +P +VMA
Sbjct: 5   FELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS   Y +M+V L++G  + + +LL  LV  QY R 
Sbjct: 125 SATAALFERRDVIIIASVSCIYGLGSPVEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++   R+  FG++IE I E   LTG+ I + E + I+
Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGDREHVSIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  IK EL+ RL  L  E +LLEAQRLEQR  YD+EM+E  G C 
Sbjct: 245 PASHFVTRPDIMKKAIVNIKAELEDRLKVLRAENKLLEAQRLEQRTNYDIEMMEEMGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y P+D  + +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLSLRPAGVTPYTLLDYFPDDFQIVIDESHVTMPQIRGMFNGDQARKQMLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + +SATPG +ELE+   +I EQIIRPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEKNPDVI-EQIIRPTGLLDPIVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+ DEIN   ++  R+L+T LTK+M+EDLT YL E  ++V+Y+HSEVKTLE
Sbjct: 424 IRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG +DV+VGINLLREG+D+PE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P++++++I  +I       
Sbjct: 544 NENGRVIMYADKMTDSMRNSISETERRRKIQIEYNEKHGITPKTIRKEIRGIIAAT---S 600

Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA    +I    LS +SKK+    ++ +  +M  AA  L+FE AA +RD +  +K+
Sbjct: 601 AADEREAIKQHDLSKMSKKERDIFIEGMEHEMKEAAKALDFERAAELRDALLEIKA 656


>gi|229032779|ref|ZP_04188737.1| UvrABC system protein B [Bacillus cereus AH1271]
 gi|228728547|gb|EEL79565.1| UvrABC system protein B [Bacillus cereus AH1271]
          Length = 658

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +NK+H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNKEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 EPETYEAAPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|87123270|ref|ZP_01079121.1| excinuclease ABC, B subunit [Synechococcus sp. RS9917]
 gi|86168990|gb|EAQ70246.1| excinuclease ABC, B subunit [Synechococcus sp. RS9917]
          Length = 678

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/670 (53%), Positives = 463/670 (69%), Gaps = 18/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P GDQP AI QL++G++  E+ Q LLG TG+GKTFTMA VI    RPA+V+A
Sbjct: 4   FELSAPYSPKGDQPTAIQQLVEGVNGGERFQTLLGATGTGKTFTMANVIAQTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFPHNAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPHNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++GD++  +  L  LV  QY R 
Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGDTLNIRAQLRDLVNNQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I RG FR+ GD +EI P++ +D   R+ +FG+++E I    P TG+ ++++E + IY
Sbjct: 184 DTEIARGRFRIKGDVLEIGPAY-DDRLVRIELFGDEVEAIRYVDPTTGEILQSLEAVNIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L+ A+K I+ ELK RL  L  EG+LLEAQRLEQR TYDLEML+  G C 
Sbjct: 243 PAKHFVTPKDRLDVAIKAIRRELKERLEVLHSEGKLLEAQRLEQRTTYDLEMLQQVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L E+
Sbjct: 303 GVENYARHLAGREAGSPPECLIDYFPDDWLLIVDESHVTCSQLQAMYNGDQARKKVLIEH 362

Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           GFRLPS  DNRPL+ EE W   R  ++ VSATPG WEL+  +G + EQ+IRPTG++DP V
Sbjct: 363 GFRLPSAADNRPLKGEEFWQKAR-QSVFVSATPGDWELKVSKGQVAEQVIRPTGVLDPIV 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    QV+D+  EI   A +  R+L+T LTKRMAEDLT+YL E  +RVRY+HSE+ ++
Sbjct: 422 EVRPTTGQVDDLLGEIRSRAAKQQRVLVTTLTKRMAEDLTDYLAEHEVRVRYLHSEIHSI 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAA
Sbjct: 482 ERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-- 737
           R+V    +LYADT+T S+  AI+ET RRR+ Q  +N+KH I P +  +K    I   L  
Sbjct: 542 RHVEGVALLYADTMTDSMAKAIEETERRRKIQQAYNEKHGIVPTAAGKKASNSILSFLEL 601

Query: 738 -------LEDAATTNISIDAQQLSLSKKKGKA------HLKSLRKQMHLAADNLNFEEAA 784
                    DA    ++  A Q      +G A       ++ L  +M  AA  L+FEEAA
Sbjct: 602 SRKLKSEGPDADLVQVAGKAVQALEDDAEGMALDALPELIEQLEAKMKEAAKKLDFEEAA 661

Query: 785 RIRDEIKRLK 794
            +RD IK+L+
Sbjct: 662 NLRDRIKQLR 671


>gi|319891759|ref|YP_004148634.1| Excinuclease ABC subunit B [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161455|gb|ADV04998.1| Excinuclease ABC subunit B [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323465072|gb|ADX77225.1| excinuclease ABC subunit B [Staphylococcus pseudintermedius ED99]
          Length = 660

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/655 (52%), Positives = 471/655 (71%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P GDQP AI  L+KGI   ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 6   FKIASNFEPQGDQPQAIKALVKGIEEGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 66  HNKTLAGQLYSEFKTFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ + Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 126 SATSALFERDDVIIIASVSCIYGLGNPDEYRDLVVSIRVGMEMDRSELLRKLVDVQYTRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++++ ISE   LTG+ ++  E   ++
Sbjct: 186 DIDFRRGTFRVRGDVVEIFPASREELCIRVEFFGDEVDRISEINYLTGEVLKEREHFALF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ +L  L  E +LLEAQRLEQR  YDLEM+   G   
Sbjct: 246 PASHFVTREEKMKIAIERIEKELEEQLAYLRSENKLLEAQRLEQRTNYDLEMMREMGFTS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQI GMY GD  RK  L E+
Sbjct: 306 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQIRGMYNGDQARKQVLVEH 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E    +I EQIIRPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLKFEEFEQKAKQLVYVSATPGPYEIEHTDEMI-EQIIRPTGLLDPKIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    +QG R+L+T LTK+M+EDLT YL E  ++V Y+HSE+KTLE
Sbjct: 425 VRPTKNQIDDLLSEIQERTEQGERVLITTLTKKMSEDLTTYLKEAGVKVNYLHSEIKTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G FDVL+GINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 485 RIEIIRDLRMGTFDVLIGINLLREGLDIPEVSLVVILDADKEGFLRSERSLIQTMGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S+++AIDET RRRE Q+ +N+KH I P+++ ++I +VI   +  D
Sbjct: 545 NDKGHVIMYADRITDSMKVAIDETERRREIQIAYNEKHGIVPKTINKEIHDVISATVETD 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               +   +  +  ++KK+ +  ++++ K+M  AA  L+FE A  +RD +  LKS
Sbjct: 605 ETNEDQRKEVPK-KMTKKEREKTIENVEKEMKEAAKALDFERATELRDLLFELKS 658


>gi|297620436|ref|YP_003708573.1| UvrABC system protein B [Waddlia chondrophila WSU 86-1044]
 gi|297375737|gb|ADI37567.1| UvrABC system protein B [Waddlia chondrophila WSU 86-1044]
          Length = 668

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/661 (53%), Positives = 463/661 (70%), Gaps = 17/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ TDY P GDQP AI +L  GI    K Q+LLG+TGSGKTFTMA VI+ +QRP +VMA
Sbjct: 3   FKLHTDYQPRGDQPQAIEKLAAGIEEGRKSQVLLGITGSGKTFTMANVIQKVQRPTLVMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+PRTDT+IEK+ SIN++ID+MR 
Sbjct: 63  HNKTLAAQLYQEFKAFFPENAVEYFVSYYDYYQPEAYIPRTDTFIEKDMSINDRIDKMRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D ++V+SVSCIYG+GS E Y  M + +K G    + +LL  LV+ QYKR 
Sbjct: 123 SATRSLLEREDVLIVASVSCIYGLGSPEYYRGMNLHIKTGVEYRRDDLLLHLVEMQYKRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP++ ED+A R+  FG+++E ++E  PLTG+ IR ++   IY
Sbjct: 183 DYDFFRATFRVRGEIIDIFPAYEEDLALRLEFFGDELERLTEIDPLTGKMIRLIDEATIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SH+VTP      A++ IK EL+ R+   ++E +L+E QR+++R  YDLEM++  G C+
Sbjct: 243 PSSHHVTPEEIRLQAIETIKAELEERMAYFDREKKLIELQRIQERTRYDLEMIKEVGFCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+   R  G+ P  L +Y P + LL VDESH TIPQ+  M+ GD  RK +L ++
Sbjct: 303 GIENYSRHFGRREEGQAPSCLLDYFPSNYLLIVDESHQTIPQLHAMFNGDRARKQSLVDF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRFEE        + VSATPG WE+++  G++VEQ+IRPTGL+DP +E
Sbjct: 363 GFRLPSAYDNRPLRFEETYSRINQVVYVSATPGEWEIKEAAGLLVEQVIRPTGLLDPIIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
            R A  QV+D  DEI     +G R+L+T LTKR+AE+LT YL + NI+ +Y+HS++ T+E
Sbjct: 423 TRPAVGQVDDALDEIRRETLKGNRVLVTTLTKRLAEELTNYLVDLNIKAKYLHSDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II+DLRLG FDVLVGINLLREGLDIPE  LV ILDADKEGFLRS+TSLIQT GRAAR
Sbjct: 483 RVQIIQDLRLGLFDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSETSLIQTCGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+Y D +TKSI   I+ T +RR  Q   N++H I P +VK +I  +  P     
Sbjct: 543 NENGRVIMYCDKLTKSICRTIEITEKRRANQEAFNREHGITPHTVKREISSLAVP----- 597

Query: 741 AATTNISIDAQQLSLSKKKGKAH----LKSLRK-------QMHLAADNLNFEEAARIRDE 789
            A  N+S    Q  L   + + H    L+ +RK       +M  AA  + FE+AAR RD+
Sbjct: 598 GAEANVSYPMPQKELMAAE-EPHPYLTLEEVRKKVAEYEGKMKKAAKEMQFEDAARYRDQ 656

Query: 790 I 790
           +
Sbjct: 657 L 657


>gi|190567660|ref|ZP_03020572.1| excinuclease ABC, B subunit [Bacillus anthracis Tsiankovskii-I]
 gi|190561076|gb|EDV15049.1| excinuclease ABC, B subunit [Bacillus anthracis Tsiankovskii-I]
          Length = 658

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDIIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|56750968|ref|YP_171669.1| excinuclease ABC subunit B [Synechococcus elongatus PCC 6301]
 gi|81299374|ref|YP_399582.1| excinuclease ABC subunit B [Synechococcus elongatus PCC 7942]
 gi|81820670|sp|Q5N3H1|UVRB_SYNP6 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|123557352|sp|Q31QS4|UVRB_SYNE7 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56685927|dbj|BAD79149.1| excinuclease ABC subunit B [Synechococcus elongatus PCC 6301]
 gi|81168255|gb|ABB56595.1| Excinuclease ABC subunit B [Synechococcus elongatus PCC 7942]
          Length = 666

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/661 (53%), Positives = 468/661 (70%), Gaps = 6/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T FQ+Q  Y P GDQP AIAQL++ + +    Q LLG TG+GKTFT+A VI  + RPA+
Sbjct: 1   MTPFQLQARYQPMGDQPTAIAQLVEQVQAGAPYQTLLGATGTGKTFTIANVIAQVGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P TDTYI K +SINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYIPVTDTYIAKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATR+L ER D IVV+S+SCIYG+G    Y +  + L++G  +  +E+L  LV  QY
Sbjct: 121 LRHSATRNLFERRDVIVVASISCIYGLGIPSEYLKAAIPLEVGAEINMREVLRQLVDVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ +++++ +
Sbjct: 181 SRNDLESGRGRFRVKGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEILQSLDRL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP   L  A+  IKEEL  +L+ L+ EG+L+EAQRLEQR  YDLEML+  G
Sbjct: 240 NIYPARHFVTPEERLEIAIAEIKEELNQQLLTLQAEGKLVEAQRLEQRTRYDLEMLQEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L GR PG PP  L +Y P+D LL VDESHVT+PQ+ GMY GD  RK  L
Sbjct: 300 YCNGVENYARHLAGREPGSPPECLIDYFPKDWLLVVDESHVTVPQLRGMYNGDQSRKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
            ++GFRLPS  DNRPL+ EE W  +R   I VSATPG WE+E+ +  IVEQ+IRPTG+VD
Sbjct: 360 VDHGFRLPSAADNRPLKSEEFWEKVR-QCIFVSATPGDWEIERSEEQIVEQVIRPTGVVD 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P V +R    QV+D+  EI    ++  R L+T LTKRMAEDLT+YL +R ++VRY+HSE+
Sbjct: 419 PEVFVRPTEGQVDDLLAEIQQRVRRQERALITTLTKRMAEDLTDYLSDRGVKVRYLHSEI 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            ++ERIEI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 479 NSIERIEILQDLRNGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRTERSLIQTIG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAAR++N + ILYAD +T+S++ AI ET RRR  QL++N++HNI PQ + ++    I   
Sbjct: 539 RAARHINGQAILYADRMTESMEKAISETERRRRIQLDYNQRHNITPQPIIKRSSNAILSF 598

Query: 737 LLEDAATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L          ++   +Q   LS ++    +  L  QM  AA NL FEEAA+ RD IK+L
Sbjct: 599 LEVSRRLNKQELEVAVSQADDLSLEEIPNLITQLEAQMKEAAKNLEFEEAAQYRDRIKKL 658

Query: 794 K 794
           +
Sbjct: 659 R 659


>gi|296393098|ref|YP_003657982.1| excinuclease ABC subunit B [Segniliparus rotundus DSM 44985]
 gi|296180245|gb|ADG97151.1| excinuclease ABC, B subunit [Segniliparus rotundus DSM 44985]
          Length = 706

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/673 (52%), Positives = 473/673 (70%), Gaps = 13/673 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQPAAIA+L + I + E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 32  FEVVSEHQPAGDQPAAIAELQRRIEAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 91

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SS+N+ ++R+RH
Sbjct: 92  PNKTLAAQLANELREMLPKNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSVNDNVERLRH 151

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LL R D +VV+SVSCIYG+GS +SY    V L  G    + +LL  LV  QY R 
Sbjct: 152 SATRNLLSRRDVVVVASVSCIYGLGSPQSYLDRSVLLTKGQEAGRDKLLRLLVDMQYDRN 211

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P++ E++A RV  FG++I+ ++    LTG  + NV+ ++I+
Sbjct: 212 DVAFTRGTFRVRGDTVEIIPAY-EELAVRVEFFGDEIDGLAYLNKLTGDVVANVDQVRIF 270

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY+T    +   M+ I++EL  RL  LE +G+LLEAQRL  R  YDLEM++  G C 
Sbjct: 271 PATHYITGEGRMAQVMEAIRQELAERLAVLEAQGKLLEAQRLRMRTEYDLEMIQQVGFCS 330

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG  P TL +Y PED L  +DESHVT+PQI  M+ GD  RK  L EY
Sbjct: 331 GIENYSRHMDGRGPGTAPATLLDYFPEDFLTVIDESHVTVPQIGAMFEGDMARKRNLVEY 390

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE++     T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP + 
Sbjct: 391 GFRLPSAVDNRPLTWEEFSERVGQTVYLSATPGPYELGQAGGEFVEQVIRPTGLVDPKIV 450

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A++  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ TL 
Sbjct: 451 VKPTKGQIDDLVHEIRQRAERDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSDIDTLR 510

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G++DVLVGINLLREGLD+PE  LV ILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 511 RVELLRELRQGEYDVLVGINLLREGLDLPEVSLVCILDADKEGFLRSTTSLIQTIGRAAR 570

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YADTIT S++ AIDET RRR KQ+ +N ++ I+P+ +++KI +++D +  E 
Sbjct: 571 NVSGEVHMYADTITDSMRNAIDETERRRAKQIAYNTENGIDPRPLRKKIADILDRVYEES 630

Query: 741 AATTNISIDAQQLSLSKKKGKAH----------LKSLRKQMHLAADNLNFEEAARIRDEI 790
             T +          SKKK  A           +  L +QM  AA  L FE AAR+RDE+
Sbjct: 631 EDTADAKSAKAPQKPSKKKTSAGTTPRTELVALIDELNEQMLSAARELRFELAARLRDEL 690

Query: 791 KRLKSSPYFQGLD 803
              K     +G+D
Sbjct: 691 AEYKKE--LKGMD 701


>gi|46908661|ref|YP_015050.1| excinuclease ABC subunit B [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|67461969|sp|Q71WT9|UVRB_LISMF RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|46881933|gb|AAT05227.1| excinuclease ABC, B subunit [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 658

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/656 (53%), Positives = 471/656 (71%), Gaps = 5/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI QL+ G+    K Q LLG TG+GKTFT++ VI+ + +P +VMA
Sbjct: 5   FELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS   Y +M+V L++G  + + +LL  LV  QY R 
Sbjct: 125 SATAALFERRDVIIIASVSCIYGLGSPIEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++   R+  FG++IE I E   LTG+ I   E + I+
Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGEREHVSIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  IK EL+ RL  L  + +LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 245 PASHFVTRPDIMKKAIVNIKAELEDRLQVLRADNKLLEAQRLEQRTNYDLEMMEEMGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y P+D  + +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQIRGMFNGDQARKQMLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + +SATPG +ELE+   +I EQIIRPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEKNPDVI-EQIIRPTGLLDPIVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+ DEIN   ++  R+L+T LTK+M+EDLT YL E  ++V+Y+HSEVKTLE
Sbjct: 424 IRPIQGQIDDLMDEINNRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG +DV+VGINLLREG+D+PE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P+++K++I  +I       
Sbjct: 544 NENGRVIMYADKMTDSMRNSIGETERRRKIQIEYNEKHGITPKTIKKEIRGIIAAT---S 600

Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA    ++    LS +SKK+    ++ +  +M  AA  L+FE AA +RD +  +K+
Sbjct: 601 AADEREAVKQHDLSKMSKKERDVFIEGMEHEMKEAAKALDFERAAELRDALLEIKA 656


>gi|268319816|ref|YP_003293472.1| excinuclease ABC, B subunit , UvrABC system [Lactobacillus
           johnsonii FI9785]
 gi|262398191|emb|CAX67205.1| excinuclease ABC, B subunit , UvrABC system [Lactobacillus
           johnsonii FI9785]
          Length = 671

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/655 (52%), Positives = 457/655 (69%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G    EK Q+L G TG+GKTFTMA VI  + +P +V++
Sbjct: 10  FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
             T  L+ RND IVV+SVSCIYG+G    Y+  +V L  G  + +  LL  LV  QY R 
Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSLSEGQEISRDVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A+RV  FG++I+ I E   LTG+ I   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVDSLTGEVIGEREQVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFVTNEQIMERALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G+PP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL Q     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQTDH-KVEQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  E+N   ++  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIKGQIDDLVGEVNKRIERNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   L+QTIGRAAR
Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD+IT S++ AID T RRR  Q++ NK+H I P+++ + I +VI      D
Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608

Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 S  D     L+KK+ +  +K+L  QM  AA  L+FEEAA +RD I  LK
Sbjct: 609 DKENKESFADLNFDELTKKQKQNMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLK 663


>gi|325570016|ref|ZP_08145941.1| excision endonuclease subunit UvrB [Enterococcus casseliflavus ATCC
           12755]
 gi|325156844|gb|EGC69015.1| excision endonuclease subunit UvrB [Enterococcus casseliflavus ATCC
           12755]
          Length = 665

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/656 (52%), Positives = 469/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AI QL+ G+   +K Q+LLG TG+GKT+T++ +I+ + +P +++A
Sbjct: 12  FDLVSKYQPAGDQPEAIHQLVDGVVGGKKAQILLGATGTGKTYTISNLIKEVNKPTLIIA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 72  HNKTLAGQLYGEFKDFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCI+G+GS   Y++ +V L++G    + +LL  L++ Q++R 
Sbjct: 132 SATSSLLERNDVIVVASVSCIFGLGSPIEYARQVVSLRVGMEKSRDQLLKELIEIQFERN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A R+  FG++I+ I E   LTG+ + + E + I+
Sbjct: 192 DIDFQRGRFRVRGDVVEIFPASRDERALRIEFFGDEIDRIREVDALTGEIMSDTEHVSIF 251

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL  RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 252 PATHFVTNEDHMEHAIASIQSELDERLKVLRAENKLLEAQRLEQRTNYDIEMMREMGYTS 311

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D LL +DESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 312 GIENYSRHMDGRKEGEPPYTLLDFFPDDFLLVIDESHVTMPQVRGMYNGDRARKQMLVDY 371

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E +Q    +V+QIIRPTGL+DP +E
Sbjct: 372 GFRLPSALDNRPLRLEEFEKHVNQIVYVSATPGPYEYDQTD-TVVQQIIRPTGLLDPVIE 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+M+EDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 431 VRPIMGQIDDLVGEINERVERNERVFVTTLTKKMSEDLTDYFKELGIKVKYLHSDIKTLE 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 491 RTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD +T S+Q AIDET RRR  Q  +N++H I P+++ ++I ++I   + + 
Sbjct: 551 NSEGKVIMYADKMTDSMQRAIDETARRRSIQEAYNEEHGIVPKTIIKEIRDLI--AITKV 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           A  T          LS+++    L  L K+M  AA  L+FE AA +RD I  LK++
Sbjct: 609 AEETGEYTTTSYEELSREEKATLLLKLEKEMKDAAKALDFETAATLRDTILELKAA 664


>gi|167968414|ref|ZP_02550691.1| excinuclease ABC subunit B [Mycobacterium tuberculosis H37Ra]
 gi|215426951|ref|ZP_03424870.1| excinuclease ABC subunit B [Mycobacterium tuberculosis T92]
 gi|260200694|ref|ZP_05768185.1| excinuclease ABC subunit B [Mycobacterium tuberculosis T46]
 gi|294996582|ref|ZP_06802273.1| excinuclease ABC subunit B [Mycobacterium tuberculosis 210]
 gi|297634186|ref|ZP_06951966.1| excinuclease ABC subunit B [Mycobacterium tuberculosis KZN 4207]
 gi|297731173|ref|ZP_06960291.1| excinuclease ABC subunit B [Mycobacterium tuberculosis KZN R506]
 gi|306775819|ref|ZP_07414156.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu001]
 gi|306779631|ref|ZP_07417968.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu002]
 gi|306784363|ref|ZP_07422685.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu003]
 gi|306788731|ref|ZP_07427053.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu004]
 gi|306793068|ref|ZP_07431370.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu005]
 gi|306797450|ref|ZP_07435752.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu006]
 gi|306803328|ref|ZP_07439996.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu008]
 gi|306807910|ref|ZP_07444578.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu007]
 gi|306967727|ref|ZP_07480388.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu009]
 gi|306971925|ref|ZP_07484586.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu010]
 gi|307079641|ref|ZP_07488811.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu011]
 gi|307084213|ref|ZP_07493326.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu012]
 gi|313658505|ref|ZP_07815385.1| excinuclease ABC subunit B [Mycobacterium tuberculosis KZN V2475]
 gi|308215734|gb|EFO75133.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu001]
 gi|308327432|gb|EFP16283.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu002]
 gi|308330911|gb|EFP19762.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu003]
 gi|308334746|gb|EFP23597.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu004]
 gi|308338523|gb|EFP27374.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu005]
 gi|308342194|gb|EFP31045.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu006]
 gi|308345720|gb|EFP34571.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu007]
 gi|308350019|gb|EFP38870.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu008]
 gi|308354656|gb|EFP43507.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu009]
 gi|308358612|gb|EFP47463.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu010]
 gi|308362538|gb|EFP51389.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu011]
 gi|308366158|gb|EFP55009.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu012]
 gi|323719893|gb|EGB29006.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           CDC1551A]
          Length = 719

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/690 (52%), Positives = 479/690 (69%), Gaps = 30/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 28  FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 88  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 148 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 208 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 267 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 327 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 447 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D +  E 
Sbjct: 567 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 626

Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773
             T  + +     + S+ +      G+A                      +K L  QM  
Sbjct: 627 DDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMA 686

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE AAR RDEI  LK     +G+D
Sbjct: 687 AARDLQFELAARFRDEIADLKRE--LRGMD 714


>gi|225574842|ref|ZP_03783452.1| hypothetical protein RUMHYD_02920 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037916|gb|EEG48162.1| hypothetical protein RUMHYD_02920 [Blautia hydrogenotrophica DSM
           10507]
          Length = 669

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/657 (52%), Positives = 474/657 (72%), Gaps = 3/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + ++Y P+GDQP AI +L+KG     + Q LLGVTGSGKTFTMA VIE +Q+P +++
Sbjct: 7   LFHLVSEYKPTGDQPEAIKKLVKGFKEGNQCQTLLGVTGSGKTFTMANVIEQLQKPTLII 66

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQLY EFK FFP N+VEYFVSYYDYYQPEAYVP TDTYI K+SSIN++I+++R
Sbjct: 67  AHNKTLAAQLYGEFKEFFPDNSVEYFVSYYDYYQPEAYVPSTDTYIAKDSSINDEIEKLR 126

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT +L ER D I++SSVSCIYG+GS + Y  M++ L+ G + ++ E++  L+  QY R
Sbjct: 127 LSATAALSERRDVIIISSVSCIYGLGSPDDYQNMVISLRPGMTKDRDEVIRQLIDIQYTR 186

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RGTFRV GD +EIFP+   + A RV  FG++++ ISE   LTG+    +  I +
Sbjct: 187 NEMDFQRGTFRVRGDVLEIFPADYSESAIRVEFFGDEVDRISEVDVLTGEIKCELNHIAV 246

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SHYV P   +  A   I++EL  R+   + E +LLEAQR+ +R  +D+EM++ TG C
Sbjct: 247 FPASHYVVPMEQILKAADEIEKELAQRVSYFKGEDKLLEAQRISERTNFDVEMMKETGFC 306

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+G  PGEPP TL +Y  +D L+ +DESH T+PQI GMY GD  RK TL +
Sbjct: 307 SGIENYSRHLSGLAPGEPPYTLVDYFGDDFLIIIDESHKTVPQIRGMYAGDQSRKQTLVD 366

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS  DNRPL F+E+       + VSATPG +E E+ + +  EQIIRPTGL+DP V
Sbjct: 367 YGFRLPSAKDNRPLNFQEFESKIDQILFVSATPGEYE-EEHELLRAEQIIRPTGLLDPKV 425

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  E+N   ++  ++L+T LTKRMAEDLT+Y+ +  IRV+Y+HS++ TL
Sbjct: 426 EVRPVEGQIDDLVSEVNKEVEKHHKVLITTLTKRMAEDLTDYMRDLGIRVKYLHSDIDTL 485

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +IIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAA
Sbjct: 486 ERTQIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAA 545

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +V++YAD +T S+++AIDET RRR  Q  +N++H I P+++++ + ++I   + +
Sbjct: 546 RNSEGRVLMYADVMTDSMRMAIDETERRRALQEAYNQEHGITPKTIQKSVRDLIS--ISK 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             A T   ++    S+SKK+ +  ++ + KQM +AA +LNFE+AA++RD++  LK +
Sbjct: 604 AVAQTESQLEKDPESMSKKELEKLIQKVEKQMKVAAADLNFEQAAQLRDKMIELKKN 660


>gi|116629946|ref|YP_815118.1| excinuclease ABC subunit B [Lactobacillus gasseri ATCC 33323]
 gi|122273116|sp|Q042E2|UVRB_LACGA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|116095528|gb|ABJ60680.1| Excinuclease ABC subunit B [Lactobacillus gasseri ATCC 33323]
          Length = 671

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/655 (52%), Positives = 456/655 (69%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G    EK Q+L G TG+GKTFTMA VI  + +P +V++
Sbjct: 10  FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
             T  L+ RND IVV+SVSCIYG+G    Y+  +V +  G  + +  LL  LV  QY R 
Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSISGGQEISRDVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A+RV  FG++I+ I E   LTG+ I   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVNSLTGEVIGEREQVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFVTNEQIMQRALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G+PP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDSARKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL Q     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQTDH-KVEQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIKGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   L+QTIGRAAR
Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD+IT S++ AID T RRR  Q++ NK+H I P+++ + I +VI      D
Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608

Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 S  D     L+KK+ +  +K+L  QM  AA  L+FEEAA +RD I  L+
Sbjct: 609 EKENKESFADLNFDELTKKQKQTMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLQ 663


>gi|120404324|ref|YP_954153.1| excinuclease ABC subunit B [Mycobacterium vanbaalenii PYR-1]
 gi|119957142|gb|ABM14147.1| Excinuclease ABC subunit B [Mycobacterium vanbaalenii PYR-1]
          Length = 722

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/693 (52%), Positives = 483/693 (69%), Gaps = 33/693 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQPAAI +L + I + EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 28  FEVVSEFEPAGDQPAAIDELERRIRAGEKDVVLLGATGTGKSATTAWLIERLQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 88  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+GD V +  LL  LV  QY R 
Sbjct: 148 SATSNLLSRRDVVVVASVSCIYGLGTPQSYMDRSVELKVGDEVPRDGLLRLLVDVQYTRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI PS+ E++A R+  FG++IEE+   +PLTG  IR V++++I+
Sbjct: 208 DMAFTRGTFRVRGDTVEIIPSY-EELAVRIEFFGDEIEELYYLHPLTGDIIRKVDSLRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+ EL+ RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 267 PATHYVAGPERMAQAISTIEAELEERLAELEGQGKLLEAQRLRMRTNYDIEMMRQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED LL +DESHVT+PQI GMY GD  RK  L ++
Sbjct: 327 GIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVDF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE+      T+ +SATPGS+EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSAVDNRPLTWEEFADRIGQTVYLSATPGSYELSQSGGEFVEQVIRPTGLVDPQVV 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 447 VKPTKGQIDDLIGEIRKRTERDERVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSPRSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739
           NV+ +V +YAD +T S++ AIDET RRR KQ  +NK+H I+P+ +++KI +++D +  E 
Sbjct: 567 NVSGEVHMYADKMTDSMKQAIDETERRRAKQTAYNKEHGIDPKPLRKKIADILDQVYREA 626

Query: 740 --DAATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQ 770
               A  ++ I     + S+ +      G+A                      +K L  Q
Sbjct: 627 DDTEAAESVPIGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSNMPRAELADLIKDLTAQ 686

Query: 771 MHLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           M  AA +L FE AARIRDEI  LK     +G+D
Sbjct: 687 MMAAARDLQFELAARIRDEIADLKKE--LRGMD 717


>gi|289554593|ref|ZP_06443803.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis KZN
           605]
 gi|289439225|gb|EFD21718.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis KZN
           605]
          Length = 711

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/690 (52%), Positives = 479/690 (69%), Gaps = 30/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 20  FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 79

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 80  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 139

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 140 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 199

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 200 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 258

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 259 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 318

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 319 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 378

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 379 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 438

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 439 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 498

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 499 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 558

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D +  E 
Sbjct: 559 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 618

Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773
             T  + +     + S+ +      G+A                      +K L  QM  
Sbjct: 619 DDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMA 678

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE AAR RDEI  LK     +G+D
Sbjct: 679 AARDLQFELAARFRDEIADLKRE--LRGMD 706


>gi|149277623|ref|ZP_01883764.1| excinuclease ABC, subunit B [Pedobacter sp. BAL39]
 gi|149231856|gb|EDM37234.1| excinuclease ABC, subunit B [Pedobacter sp. BAL39]
          Length = 678

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/664 (52%), Positives = 479/664 (72%), Gaps = 15/664 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P+GDQP AI QL+ G++S E  Q LLGVTGSGKTFT+A VI+  Q+P ++++
Sbjct: 3   FQLVSDYKPTGDQPNAIRQLVDGVNSNEHYQTLLGVTGSGKTFTVANVIQETQKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAV YFVSYYDYYQPEA++P T+TYIEK+ SINE+I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPENAVNYFVSYYDYYQPEAFMPSTNTYIEKDLSINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             T +L+  R D IVVSS+SCIYG+G+ E +S+ + +  +G  + +   L SLV+  Y R
Sbjct: 123 RTTSALMSGRRDVIVVSSISCIYGMGNPEDFSRSVFRFAVGTRISRNSFLHSLVEILYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD+++IFP++L D A+RVS FG+DIEE+S   P+TG+ +  +E + I
Sbjct: 183 TTTEFKRGTFRVKGDTVDIFPAYL-DNAYRVSFFGDDIEELSLIDPVTGKTLDKMEDMAI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VTP+   ++++  I+EEL++R  +L  +  LLEA+RLE+R+ +D+EM++  G C
Sbjct: 242 YPANLFVTPKDRFSSSIWGIQEELEVRKNQLLGDKHLLEAKRLEERVNFDIEMMKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GR+PG  P  L +Y P+D L+ +DESHVT+PQI  MY GD  RK +L E
Sbjct: 302 SGIENYSRFFDGRSPGMRPFCLLDYFPDDYLMVIDESHVTVPQIRAMYGGDRSRKMSLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL F+E+  L P TI VSATP  +EL + +GI++EQ+IRPTGL+DP +
Sbjct: 362 YGFRLPSALDNRPLNFDEFEGLAPQTIYVSATPADYELHKSEGIVIEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E++ A  QV+D+ +EI+   + G RIL+T LTKRMAE+LT+Y+   NI+ RY+HSEVKTL
Sbjct: 422 EVKPAINQVDDLLEEIDKTIKMGDRILVTTLTKRMAEELTKYMDRLNIKCRYIHSEVKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R LRLG+FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS  +LIQTIGRAA
Sbjct: 482 ERVEILRGLRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSDRALIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIMEVIDPI 736
           RN   +VI+YAD IT+S++  I ET RRREKQ+ +N +H I P++V   +E I+E    +
Sbjct: 542 RNDRGRVIMYADNITESMERTISETNRRREKQVAYNLEHGIVPKTVGKSREAILEQTSVL 601

Query: 737 LLEDAAT---TNISIDAQQLS-------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
                AT     + +D   ++       ++K + +  +   +K+M  AA  ++F  AAR+
Sbjct: 602 DFSGNATRAKAYVEVDEVSMAADPIVQYMNKGEMQKSIDKTKKEMAKAAKEMDFLLAARL 661

Query: 787 RDEI 790
           RDE+
Sbjct: 662 RDEM 665


>gi|172058423|ref|YP_001814883.1| excinuclease ABC, B subunit [Exiguobacterium sibiricum 255-15]
 gi|171990944|gb|ACB61866.1| excinuclease ABC, B subunit [Exiguobacterium sibiricum 255-15]
          Length = 655

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/656 (53%), Positives = 464/656 (70%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P GDQP AI +L+ G+ + E+ Q LLG TG+GKTFT++ VI+ +++P +V+A
Sbjct: 3   FELVSPFEPGGDQPEAIKKLIAGVKNGERHQTLLGATGTGKTFTVSNVIKEIKKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVS+YDYYQPEAYVP TDT+IEK+SSIN++ID++RH
Sbjct: 63  HNKTLAGQLYSEFKEFFPNNAVEYFVSFYDYYQPEAYVPSTDTFIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D ++V+SVSCIYG+G+ E Y+  ++ L++G+ + + E+L  L+  QY+R 
Sbjct: 123 SATASLFEREDVLIVASVSCIYGLGNPEEYNNHVLSLRVGNEMGRNEMLRRLIDIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++   R+  FG++IE I +  PLTG+ I + E I I+
Sbjct: 183 DIDFQRGRFRVRGDVVEIFPASRDEQCVRIEFFGDEIERIRDMDPLTGEIIADREHISIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A+  I+ EL+ +L ++ ++G LLEAQRLEQR  YDLEM+   G C 
Sbjct: 243 PASHFVTGDTRLQKAITNIEAELETQLAKMREDGMLLEAQRLEQRTNYDLEMMREMGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L    PG  P TL +Y P+D LL  DESHVT+PQI GMY GD  RK  L ++
Sbjct: 303 GIENYSRHLNLMPPGSTPYTLIDYFPKDFLLVADESHVTLPQIRGMYNGDQARKQVLVDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRFEE+       I +SATPG +E+E  +  +VEQIIRPTGLVDP +E
Sbjct: 363 GFRLPSAKDNRPLRFEEFEEKVSQAIYISATPGPYEIEHTKE-MVEQIIRPTGLVDPTIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I     Q++ + D I     +  R+L+T LTK+M+EDLT+YL E  ++V YMHSE+KTLE
Sbjct: 422 IHPITGQIDYLMDNIRERVAKNERVLVTTLTKKMSEDLTDYLKEHGVKVNYMHSEIKTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 482 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VIL+AD +T S+Q AIDET RRR  QL  NK+H I P+++++ +  VI   +  D
Sbjct: 542 NSEGHVILFADKMTDSMQRAIDETERRRNIQLAFNKEHGITPKTIQKDVRGVISTTIESD 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                +    +   L K + +  L+ L ++M  AA ++ FE AA +RD I  LK+ 
Sbjct: 602 DTVEKLE---KFNKLKKPERETLLEQLDQEMRQAAKDMQFERAAELRDLILELKAG 654


>gi|157693900|ref|YP_001488362.1| excinuclease ABC subunit B [Bacillus pumilus SAFR-032]
 gi|157682658|gb|ABV63802.1| excision endonuclease subunit B [Bacillus pumilus SAFR-032]
          Length = 661

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/656 (54%), Positives = 479/656 (73%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI +L++GIH  ++ Q LLG TG+GKTFT++ +I+ + +P +V+A
Sbjct: 5   FELVSNYQPQGDQPKAIEKLVEGIHQGKQHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y ++++ L+    +E+ +LL  LV  QY R 
Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYRELVLSLRTEMEIERNQLLRKLVDIQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ + + E + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I++EL+ +L +L   G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMEKAIVNIEQELEEQLEKLRDNGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PG  P TL +Y P+D ++ VDESHVT+PQI  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTVPQIRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       + VSATPG +ELE+    +VEQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLTFDEFEKHINHIVHVSATPGPYELEKTPE-VVEQIIRPTGLLDPIIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+   ++  R+L+T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIHARIEKNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +TKS+ +AI ET RRRE+Q  +N+K+ I PQ++ +KI + I    + +
Sbjct: 544 NSEGRVIMYADKMTKSMDIAIQETKRRREQQEAYNEKYGITPQTIHKKIRDAIKATKIHE 603

Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +    +  A +LS +SKK+ +  ++ +  +M  AA  L+FE+AA +RD +  LK+
Sbjct: 604 ESEEYETNAAPKLSKMSKKEREKVIEKVELEMKDAAKALDFEKAAELRDLLLELKA 659


>gi|311110421|ref|ZP_07711818.1| excinuclease ABC subunit B [Lactobacillus gasseri MV-22]
 gi|311065575|gb|EFQ45915.1| excinuclease ABC subunit B [Lactobacillus gasseri MV-22]
          Length = 671

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/655 (52%), Positives = 456/655 (69%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G    EK Q+L G TG+GKTFTMA VI  + +P +V++
Sbjct: 10  FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
             T  L+ RND IVV+SVSCIYG+G    Y+  +V +  G  + +  LL  LV  QY R 
Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSISGGQEISRDVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A+RV  FG++I+ I E   LTG+ I   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVNSLTGEVIGEREQVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFVTNEQIMQRALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G+PP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL Q     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQTDH-KVEQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIKGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   L+QTIGRAAR
Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD+IT S++ AID T RRR  Q++ NK+H I P+++ + I +VI      D
Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608

Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 S  D     L+KK+ +  +K+L  QM  AA  L+FEEAA +RD I  L+
Sbjct: 609 EKENKESFADLNFDELTKKQKQTMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLQ 663


>gi|291166446|gb|EFE28492.1| excinuclease ABC subunit B [Filifactor alocis ATCC 35896]
          Length = 656

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/656 (54%), Positives = 473/656 (72%), Gaps = 10/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + T Y P+GDQP AI  ++  I  + K Q LLGVTGSGKTFTMA +I+  Q+P +V+A
Sbjct: 4   FNLTTSYQPTGDQPKAIDDMVNSIQQKNKFQTLLGVTGSGKTFTMANIIQQTQKPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +++ER D I+V+SVSCIYG+G  + Y  M+V L+     ++ E++  LV+ QY+R 
Sbjct: 124 SATAAVIERRDVIIVASVSCIYGLGDPDDYRYMMVSLRPQMIKDRDEVIKQLVEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  IRGTFRV GD +EI P++ +    RV  FG++IE I E   LTG+ I  +    I+
Sbjct: 184 DINFIRGTFRVRGDILEIMPANTDIKGLRVEFFGDEIERIVEIDHLTGEIIGELRQASIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +  L  A+  I +EL+ RL    +   LLEAQRLEQR  YD+EML   G+C+
Sbjct: 244 PASHYVTTKEKLEQAIVGIGKELQERLQYFRENNFLLEAQRLEQRTMYDIEMLREIGTCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR  GE   TL ++  +D L+ VDESH TIPQ++ MY GD  RK +L +Y
Sbjct: 304 GIENYSRHLTGRKAGERAFTLMDFFDDDYLIIVDESHATIPQLNAMYSGDRARKESLIDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ--CQGIIVEQIIRPTGLVDPP 558
           GFRLPS  DNRPL+FEE+  +    + VSATPG +E+E   C G   EQIIRPTGL+DP 
Sbjct: 364 GFRLPSAADNRPLKFEEFEGMINQILFVSATPGKYEMEHSSCFG---EQIIRPTGLLDPV 420

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    Q++D+  EI    Q+  R+L+T LTK+MAE LT+YL +  I V Y+HS+V+T
Sbjct: 421 IEVRPIDGQIDDLLHEIQNTVQKNERVLVTTLTKKMAESLTDYLKQAGILVEYLHSDVET 480

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LERI +IR+LRLG+F VLVGINLLREGLDIPE  LVAILDADKEGFLRS+TS+IQTIGRA
Sbjct: 481 LERIRLIRNLRLGEFHVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSMIQTIGRA 540

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN + +VI+YADTITKS++ AIDET+RRRE Q  +N++H I P+++ +++ + I  ++ 
Sbjct: 541 ARNADGRVIMYADTITKSMKSAIDETSRRREIQNRYNEEHGIVPKTINKEVRQEISMLVA 600

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E   T ++     +  +S+++    ++ L++QM  AA+NLNFE+AA  RD I +L+
Sbjct: 601 EKEETYSV-----KEVISRQELIEKIEVLKEQMLEAAENLNFEQAAIYRDSILQLE 651


>gi|52145209|ref|YP_086431.1| excinuclease ABC subunit B [Bacillus cereus E33L]
 gi|81824124|sp|Q631I6|UVRB_BACCZ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|51978678|gb|AAU20228.1| UvrABC system protein B (excinuclease ABC, subunit B) [Bacillus
           cereus E33L]
          Length = 658

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N+++ I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRSIQEAYNEEYGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|302546273|ref|ZP_07298615.1| excinuclease ABC subunit B [Streptomyces hygroscopicus ATCC 53653]
 gi|302463891|gb|EFL26984.1| excinuclease ABC subunit B [Streptomyces himastatinicus ATCC 53653]
          Length = 720

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/694 (50%), Positives = 477/694 (68%), Gaps = 37/694 (5%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           + +  F++ + Y PSGDQP AIA L + I   EK  +LLG TG+GK+ T A +IE +QRP
Sbjct: 17  RKVAPFEVVSPYTPSGDQPTAIADLDRRISGGEKDVVLLGATGTGKSATTAWMIEKLQRP 76

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE++
Sbjct: 77  TLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEV 136

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           +R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V LK+G+  ++ +LL   V  
Sbjct: 137 ERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGEETDRDQLLRRFVDI 196

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ I + +
Sbjct: 197 QYARNDMAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEVISDDQ 255

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  SHYV     +  A+  I+ EL+  L  LEK+G+LLEAQRL  R TYD+EM+  
Sbjct: 256 ELYVFPASHYVAGPERMEKAIAGIEAELEQTLARLEKQGKLLEAQRLRMRTTYDIEMMRQ 315

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G+C  IENYS ++ GR  G PP TL +Y PED LL +DESHVT+PQI  MY GD  RK 
Sbjct: 316 IGTCSGIENYSLHIDGREAGSPPHTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKR 375

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL E+GFRLPS +DNRPL++EE+      T+ +SATPG++E+ +  G  VEQIIRPTGLV
Sbjct: 376 TLIEHGFRLPSALDNRPLKWEEFQKRIGQTVYLSATPGTYEMSRGDG-FVEQIIRPTGLV 434

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y+ E  I+VRY+HS+
Sbjct: 435 DPEVVVKPTDGQIDDLIHEIRTRTEKDERVLVTTLTKKMAEDLTDYMLELGIQVRYLHSD 494

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTI
Sbjct: 495 VDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTI 554

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+ +V +YAD +T +++ AIDET RRREKQ+  N+K+ I+PQ +++KI +++  
Sbjct: 555 GRAARNVSGQVHMYADKVTPAMEKAIDETNRRREKQIAFNEKNGIDPQPLRKKIGDIVAT 614

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAH-------------------------------- 763
           +  E+  T  +     + S  + KG                                   
Sbjct: 615 LAREEIDTKELLETGYRKSADQGKGAGKGQKAPMPALASHKAGGKGAKDGELTDRPAAEL 674

Query: 764 ---LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              ++ +  +M  AA  L FE AAR+RDE+  LK
Sbjct: 675 AELIEEMTDRMKAAAAELQFEVAARLRDEVGELK 708


>gi|313904913|ref|ZP_07838284.1| excinuclease ABC, B subunit [Eubacterium cellulosolvens 6]
 gi|313470170|gb|EFR65501.1| excinuclease ABC, B subunit [Eubacterium cellulosolvens 6]
          Length = 661

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/656 (53%), Positives = 472/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L+ G  S  + + LLGVTGSGKTFTMA VI+ +Q+P +++A
Sbjct: 3   FKLHSEYKPTGDQPQAIRELVDGFRSGNQCETLLGVTGSGKTFTMANVIQELQKPTLIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYI K+SS NE+ID++R 
Sbjct: 63  HNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSRNEEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ER D IV+SSVSCIYG+GS + Y +MI+ L+ G   ++ +++ +L+  QY+R 
Sbjct: 123 SATSSLIERKDVIVISSVSCIYGLGSPKDYEKMIIPLRPGMQKDRDDVIRALIDIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I   RGTFRV GD IEI P++  + A RV  FG++I+ I+    LTG+  +++  + I 
Sbjct: 183 EIDFHRGTFRVHGDVIEIVPANESETAIRVEFFGDEIDRITCVDILTGEVKQDLNFVSIA 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+ T++ A + I+ EL++R+ E + EG+LLEAQR+E+R  +D+EML  TG C 
Sbjct: 243 PASHYVVPQETIDRATRDIEAELELRVGEFKGEGKLLEAQRIEERTNFDIEMLRETGVCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++G  PGEPP TL ++ P+D L+ VDESH TIPQI  MY GD  RK+TL +Y
Sbjct: 303 GIENYSRHMSGLKPGEPPYTLMDFFPDDFLIIVDESHRTIPQIGAMYAGDRSRKSTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       + VSATPG +E E  + +  EQIIRPTGL+DP V+
Sbjct: 363 GFRLPSALDNRPLSFDEFEERIDQILFVSATPGEYEAEH-ELLRAEQIIRPTGLLDPKVD 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI        ++L+T LTKRMAEDLT+Y+ E  IRV Y+HS++  LE
Sbjct: 422 VRPVEGQIDDLIGEIKKEVAAHHKVLVTTLTKRMAEDLTDYMKEAGIRVNYLHSDIDALE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RAKIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S++ AI ET RRR  Q  +N++H+I PQ++++++ E+I   +  D
Sbjct: 542 NSEGHVIMYADNMTDSMRNAISETERRRAVQELYNEEHHITPQTIQKRVGELIS--ISRD 599

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A     ++    S++KK+    +  + KQM  AA  LNFE AA++RD +K LK +
Sbjct: 600 VAARERKLEKDPESMTKKELTKLIADVEKQMKAAAAELNFEMAAQLRDRMKELKQT 655


>gi|313888540|ref|ZP_07822206.1| excinuclease ABC, B subunit [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845426|gb|EFR32821.1| excinuclease ABC, B subunit [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 653

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/651 (54%), Positives = 467/651 (71%), Gaps = 1/651 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L +GI    K Q LLGVTGSGKTFTMA VIE +Q+P +V+A
Sbjct: 3   FKIHSEYKPTGDQPQAIDKLTEGIKKGYKHQNLLGVTGSGKTFTMANVIERVQKPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL SE K FFP NAVE+FVSYYDYYQPEAYVP TDT+IEK+SSIN++ID++RH
Sbjct: 63  HNKTLAYQLCSELKEFFPENAVEFFVSYYDYYQPEAYVPGTDTFIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G    Y ++ + L+ G   ++ E++S LV  QY R 
Sbjct: 123 SATMALFERKDVIIVASVSCIYGLGDPIDYEKLAISLRPGMIRDRNEVMSKLVDIQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD +EIFP+   + + RV  FG++I+ I+E   LTGQ +  +    I 
Sbjct: 183 DYEFKRGTFRVRGDILEIFPASSSENSIRVEFFGDEIDRITEVNALTGQVLHYLNHAYIT 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T    +  A+  I+EEL+ RL  L+ + +LLEAQRLEQR  YDLEML   G C 
Sbjct: 243 PASHFATSEEKVKRAIVTIEEELEERLKVLKDQEKLLEAQRLEQRTRYDLEMLSEMGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PG  P TL +Y P+D L  +DESH TIPQI GMY GD  RK TL EY
Sbjct: 303 GIENYSRHLSGRAPGSRPYTLIDYFPKDFLTIIDESHQTIPQIRGMYNGDRARKETLVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF E+  +    + VSATPG +ELE  +   VEQIIRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLRFNEFEEMMNQCVYVSATPGPYELEHTEQ-EVEQIIRPTGLLDPIIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+ +E+N A ++  R+L+T LTKRM+EDL+ +L E   ++ YMHS+V TLE
Sbjct: 422 VRPIKNQIDDIINEVNGAIEREERVLITTLTKRMSEDLSRHLKEIGYKITYMHSDVDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGK DVLVGINLLREGLD+PE   V ILDADKEGFLRS TSLIQT GRAAR
Sbjct: 482 RMKIIRDLRLGKVDVLVGINLLREGLDLPEVSRVCILDADKEGFLRSVTSLIQTAGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YADTIT S+Q+ IDET+RRR+ Q E+N++H I P+++ + + EVI+  +  +
Sbjct: 542 NAGGKVIMYADTITPSMQVTIDETSRRRKIQEEYNEEHGITPKTIVKSVREVINTAIAAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            +     I  ++   +K +    + +L+ +M+ AA+ L+FE+AA IRD+IK
Sbjct: 602 ESIDFKDIKDEENEFTKDEINEMIDALKPEMYRAAEELDFEKAAEIRDKIK 652


>gi|196033206|ref|ZP_03100619.1| excinuclease ABC, B subunit [Bacillus cereus W]
 gi|206976848|ref|ZP_03237751.1| excinuclease ABC, B subunit [Bacillus cereus H3081.97]
 gi|217962646|ref|YP_002341220.1| excinuclease ABC subunit B [Bacillus cereus AH187]
 gi|222098620|ref|YP_002532678.1| excinuclease abc subunit b [Bacillus cereus Q1]
 gi|229141893|ref|ZP_04270419.1| UvrABC system protein B [Bacillus cereus BDRD-ST26]
 gi|195994635|gb|EDX58590.1| excinuclease ABC, B subunit [Bacillus cereus W]
 gi|206744983|gb|EDZ56387.1| excinuclease ABC, B subunit [Bacillus cereus H3081.97]
 gi|217065785|gb|ACJ80035.1| excinuclease ABC, B subunit [Bacillus cereus AH187]
 gi|221242679|gb|ACM15389.1| UvrABC system protein B (excinuclease ABC, subunit B) [Bacillus
           cereus Q1]
 gi|228641508|gb|EEK97813.1| UvrABC system protein B [Bacillus cereus BDRD-ST26]
          Length = 658

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|94985990|ref|YP_605354.1| excinuclease ABC subunit B [Deinococcus geothermalis DSM 11300]
 gi|94556271|gb|ABF46185.1| excinuclease ABC, B subunit [Deinococcus geothermalis DSM 11300]
          Length = 676

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/656 (52%), Positives = 468/656 (71%), Gaps = 8/656 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
             ++++D+ PSGDQP AI  L+ G+ S  + Q LLG TG+GKT++MAKVIE   RPA++M
Sbjct: 1   MLKVKSDFKPSGDQPTAIRSLVDGLASGLRFQTLLGATGTGKTYSMAKVIEETGRPALIM 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNKIL AQL SEF+ FFP  AVE+F+SYYDYYQPEAYVP  D +IEK++SIN++I+R+R
Sbjct: 61  APNKILTAQLASEFREFFPGAAVEFFISYYDYYQPEAYVPGKDLFIEKDASINQEIERLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HS TRSLL R D IVV+SVSCIYG+G  E Y  + + LK+G+ V + E+L  LV  QY+R
Sbjct: 121 HSTTRSLLTRRDTIVVASVSCIYGLGDPEEYRALNLILKVGEQVGRDEILGRLVTMQYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ +  G FR  GD +E++PS+ E    R+ ++G D++ I   +P+TG K+ +++   +
Sbjct: 181 NDLELAPGRFRAKGDIVEVWPSYDEQ-PLRIELWGEDVDRIQIVHPVTGDKLGDLDATVV 239

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y   HYV+    +  A+  I+EEL+ RL   +  G+LLEAQRL++R  YDLEML+  G C
Sbjct: 240 YPAKHYVSSAGNIERAIVTIQEELEERLEYFKSVGKLLEAQRLKERTLYDLEMLKVLGYC 299

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR++ GR PGE P T+ +Y P+D + F+DESHVT+PQI GM  GD  RK TL +
Sbjct: 300 SGIENYSRHIDGRKPGETPYTMLDYFPDDFITFIDESHVTVPQIGGMANGDRARKQTLVD 359

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL F+E+       + VSATPG +E  Q    + +QIIRPTGLVDP V
Sbjct: 360 YGFRLPSALDNRPLNFDEFLHKTGQIVFVSATPGPFE-RQVSDNVADQIIRPTGLVDPSV 418

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R  + QV+D+   I   A +G R L+T LTKRMAEDLTEYL E+ +R RYMHS++ ++
Sbjct: 419 TVRPIQGQVDDLLGRIRERAARGERTLVTTLTKRMAEDLTEYLLEKGVRARYMHSDIDSV 478

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  IIRDLRLG +DVL+GINLLREGLD+PE  LVAILDADK GFLRS+ +LIQTIGRAA
Sbjct: 479 ERQVIIRDLRLGHYDVLIGINLLREGLDLPEVSLVAILDADKPGFLRSERALIQTIGRAA 538

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN +V+LYADT+T ++Q A+DET RRREKQL +N +H I PQ+V++ + +VI     E
Sbjct: 539 RNVNGEVVLYADTVTPAMQAALDETQRRREKQLAYNAEHGITPQTVRKGVRDVIRG---E 595

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + A  ++S D   L   +    A L  L  +M  A+++L+FE AA +RD+I+ +++
Sbjct: 596 EVAEVDVSTD---LGDDRDALTAQLTELELEMWQASEDLDFERAAALRDQIRAIEA 648


>gi|126642540|ref|YP_001085524.1| excinuclease ABC subunit B [Acinetobacter baumannii ATCC 17978]
          Length = 623

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/622 (56%), Positives = 453/622 (72%), Gaps = 14/622 (2%)

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           MA VI   QRP IVMA NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+
Sbjct: 1   MANVIAQTQRPTIVMAHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTF 60

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304
           IEK+++IN+ ID+MR SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V 
Sbjct: 61  IEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVQGDRVS 120

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + E++  LV+ QY R ++  +RGT+R+ G+ I+IFP+  +  A R+ +F ++++ I  F 
Sbjct: 121 RDEIIRRLVEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFD 180

Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
           PLTG+ +R V  + IY  SHYVTP+  L  A+  IK+EL+ +L    +  +LLEAQR+EQ
Sbjct: 181 PLTGKMVRKVPRVTIYPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQ 240

Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484
           R  YDLEM++  G    IENYSR+L+GR  GE PPTLF+Y+PED+LL +DESHVT+PQI 
Sbjct: 241 RTRYDLEMMQQLGYTNGIENYSRHLSGRPAGEAPPTLFDYVPEDALLIIDESHVTVPQIG 300

Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544
            MY+GD  RK  L  YGFRLPS +DNRP++FEEW  + PTTI VSATP  +ELE+ +  +
Sbjct: 301 AMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTIFVSATPARYELEKSEQ-V 359

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           VEQ++RPTGL+DP +E+R   TQV+DV  EIN+      R+L+T LTKRMAEDLT YL E
Sbjct: 360 VEQVVRPTGLIDPEIEVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKE 419

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
             ++V Y+HS++ T+ER++II +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGF
Sbjct: 420 YGVKVAYLHSDIDTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGF 479

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
           LRS+ SLIQTIGRAARNV  K ILYADTIT S++ AIDET RRR KQ+E N++H I P+S
Sbjct: 480 LRSERSLIQTIGRAARNVKGKAILYADTITDSMRKAIDETERRRAKQIEFNEQHGITPRS 539

Query: 725 -VKEKIMEV----------IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
            V++ + E+          ID  +LE A    +S D + +    K    H+  L K+M  
Sbjct: 540 AVRQAVKEIDTGEVLSDDQIDEKVLEQAQA--LSADERHILSDPKLFSKHITKLEKEMLK 597

Query: 774 AADNLNFEEAARIRDEIKRLKS 795
           A+ +L FE+AARIRDEI RLK+
Sbjct: 598 ASKDLQFEQAARIRDEIVRLKA 619


>gi|290889850|ref|ZP_06552937.1| hypothetical protein AWRIB429_0327 [Oenococcus oeni AWRIB429]
 gi|290480460|gb|EFD89097.1| hypothetical protein AWRIB429_0327 [Oenococcus oeni AWRIB429]
          Length = 673

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/665 (52%), Positives = 471/665 (70%), Gaps = 17/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL++G++   K Q+LLG TG+GKTFT++ VI ++ +P ++++
Sbjct: 11  FKLHSNYQPTGDQPTAINQLIEGVNKGTKEQVLLGATGTGKTFTISNVIASVNKPTLILS 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++R+
Sbjct: 71  HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRN 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL RND IVV+SVS I+G+G    Y   ++ L+ GD   +  L+  L+  QY R 
Sbjct: 131 SATSSLLSRNDTIVVASVSSIFGLGDPHQYKDHVISLRTGDEYGRNNLMRHLIDIQYVRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++ A RV  FG++I+ I E  PLTG+ +   + I I+
Sbjct: 191 DIDFARGTFRVRGDVVEIFPASEDEKAIRVEFFGDEIDRIREINPLTGEILLEDDFISIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T    L +A   I++E++  + + E++G+LLEAQRL+QR  YD+EML   G   
Sbjct: 251 PAKHFMTNDNILKSATDGIRQEMEECVKKFEQQGKLLEAQRLKQRTEYDIEMLLEMGYTN 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D LL VDESHVT+PQ+ GMY GD  RK TL +Y
Sbjct: 311 GIENYSRWMDGRKQGEPPFTLLDFFPKDFLLVVDESHVTMPQVRGMYNGDQARKKTLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+  E+       I +SATPG +EL +     I EQIIRPTGL+DP +
Sbjct: 371 GFRLPSALDNRPLKLSEFEQHVNQVIYMSATPGDYELSRVTPDNIAEQIIRPTGLLDPEI 430

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  R Q++D+  EIN  A +  R+ +T LTKRM+EDLT YL E  ++V+Y+HS++KTL
Sbjct: 431 EVRPIRGQIDDLLGEINARAAKNERVFITTLTKRMSEDLTTYLKESGVKVQYLHSDIKTL 490

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER E+IR+LRLGKFD LVGINLLREGLD+PE  LVAILDADK+GFLR++ SLIQTIGRAA
Sbjct: 491 ERTEVIRNLRLGKFDALVGINLLREGLDVPEVSLVAILDADKDGFLRNERSLIQTIGRAA 550

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VI+YAD +T+++Q AIDET RRR  Q+++N++HNI P ++K++I   I      
Sbjct: 551 RNSNGHVIMYADVVTENMQKAIDETARRRRIQIKYNEEHNITPTTIKKEIRGSI------ 604

Query: 740 DAATTNI-SIDAQQLSLSK--------KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A +  + S D  +L L+K        K  K  + +L KQM  AA  ++FEEAA++RD I
Sbjct: 605 -AISHEVQSADESKLDLTKVAFADMPIKDQKEMVGNLTKQMKSAAKRMDFEEAAQLRDSI 663

Query: 791 KRLKS 795
             LK+
Sbjct: 664 LELKT 668


>gi|255282077|ref|ZP_05346632.1| excinuclease ABC subunit B [Bryantella formatexigens DSM 14469]
 gi|255267396|gb|EET60601.1| excinuclease ABC subunit B [Bryantella formatexigens DSM 14469]
          Length = 660

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/654 (52%), Positives = 466/654 (71%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L+KG     + + LLGVTGSGKTFTMA VI+ + +P +++A
Sbjct: 4   FELVSEYKPTGDQPQAIEKLVKGFKEGNQCETLLGVTGSGKTFTMANVIQQLNKPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYI K+S++N++ID++R 
Sbjct: 64  HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSAVNDEIDKLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ER D +++SSVSCIYG+G  E++ +M+V L+ G   ++ E++  L+  QY R 
Sbjct: 124 SATASLVERRDVVIISSVSCIYGLGEPENFEKMMVSLRPGMEKDRDEVIRQLIDIQYDRS 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGTFRV GD +EIFP+   D A+RV  FG++I+ I++   LTG+    +E I ++
Sbjct: 184 EMDFHRGTFRVHGDVLEIFPASAGDYAFRVEFFGDEIDRITQIDVLTGEIKSRMEHIAVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P   +  A   I+EEL  R+   + E +LLEAQR+ +R  +D+EM++ TG C 
Sbjct: 244 PASHYVVPPDRIRQAAADIEEELAERVAYFKSEDKLLEAQRIAERTNFDIEMMKETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L G  PG PP TL +Y P+D L+ +DESH TIPQI  MY GD  RK TL +Y
Sbjct: 304 GIENYSRHLAGLKPGAPPHTLIDYFPDDFLMIIDESHKTIPQIRAMYSGDQSRKTTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       + VSATPG +E E  + +  EQIIRPTGL+DP V+
Sbjct: 364 GFRLPSAKDNRPLNFEEFESKIDQIMFVSATPGEYE-EAHEQLRAEQIIRPTGLLDPKVD 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N    +  ++L+T LTKRMAEDLTEY+ E  IRVRY+HS++ TLE
Sbjct: 423 VRPVEGQIDDLVGEVNKEVAKKNKVLITTLTKRMAEDLTEYMREIGIRVRYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 483 RTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSATSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S+++AI+ET RRR  Q  +N++H I PQ++++ + ++I   + ++
Sbjct: 543 NAEGHVIMYADVMTDSMKIAIEETERRRRVQDAYNQEHGITPQTIQKSVRDLIS--ISKE 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A     +     S+SKK+ +  +  ++K+M  AA  LNFE AA +RD++  LK
Sbjct: 601 VAKEEKKLAVDPESMSKKELEKLIAEVQKKMKKAAAELNFEAAAELRDQMINLK 654


>gi|15841088|ref|NP_336125.1| excinuclease ABC subunit B [Mycobacterium tuberculosis CDC1551]
 gi|253799329|ref|YP_003032330.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis KZN
           1435]
 gi|13881302|gb|AAK45939.1| excinuclease ABC, subunit B [Mycobacterium tuberculosis CDC1551]
 gi|253320832|gb|ACT25435.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis KZN
           1435]
          Length = 739

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/690 (52%), Positives = 479/690 (69%), Gaps = 30/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 48  FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 107

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 108 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 167

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 168 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 227

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 228 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 286

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 287 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 346

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 347 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 406

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 407 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 466

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 467 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 526

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 527 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 586

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D +  E 
Sbjct: 587 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 646

Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773
             T  + +     + S+ +      G+A                      +K L  QM  
Sbjct: 647 DDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMA 706

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE AAR RDEI  LK     +G+D
Sbjct: 707 AARDLQFELAARFRDEIADLKRE--LRGMD 734


>gi|160935824|ref|ZP_02083199.1| hypothetical protein CLOBOL_00715 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441568|gb|EDP19278.1| hypothetical protein CLOBOL_00715 [Clostridium bolteae ATCC
           BAA-613]
          Length = 660

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/661 (53%), Positives = 473/661 (71%), Gaps = 16/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI QL+KG     + + LLGVTGSGKTFTMA VI+ +Q+P +++A
Sbjct: 4   FELVSEFQPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIQQLQKPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID++RH
Sbjct: 64  HNKTLAAQLYSEFKEFFPKNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E++  L+  QY R 
Sbjct: 124 SATAALSEREDVIIVASVSCIYGLGSPIDYKEMVISLRPGMIKDRDEVIHKLIDIQYDRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD ++I+P++ + VA+RV  FG++++ ISE   LT +    +  + I+
Sbjct: 184 DMDFKRGTFRVRGDVLDIYPAYSDGVAYRVEFFGDEVDRISEIDTLTDETKAQLGHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +  A + I  EL+ R+   + E +LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 244 PASHYVVPKEKMMEATENILTELEERVTFFKSEDKLLEAQRISERTNFDVEMMRETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PGEPP TL +Y PED L+ VDESH+T+PQ+ GMY GD  RK TL ++
Sbjct: 304 GIENYSRHLTGGLPGEPPCTLIDYFPEDFLIIVDESHITLPQVRGMYAGDRSRKTTLVDF 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATP ++E E  + + VEQIIRPTGL+DP + 
Sbjct: 364 GFRLPSALDNRPLAFPEFESKINQMMFVSATPSAYEAEH-ELMRVEQIIRPTGLLDPEIS 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N       ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ TLE
Sbjct: 423 VRPVEGQIDDLVSEVNKEVAAHHKVLITTLTKRMAEDLTDYMREVGIRVKYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+R+  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RAEIIRDMRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S+ +AI+ET RRR+ Q ++N+ H I P ++K+ + ++I       
Sbjct: 543 NSEGHVIMYADKVTDSMAVAIEETNRRRQIQQKYNEDHGITPTTIKKAVRDLI------- 595

Query: 741 AATTNISIDAQQL-----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD---EIKR 792
           A +  ++ D +       S+ +K+ K   K L K+MH AA  LNFEEAAR+RD   EIK+
Sbjct: 596 AISKAVNADDKHFKKDPESMDEKELKKLSKELEKKMHQAAAELNFEEAARLRDRMIEIKK 655

Query: 793 L 793
           +
Sbjct: 656 M 656


>gi|238853234|ref|ZP_04643619.1| excinuclease ABC subunit B [Lactobacillus gasseri 202-4]
 gi|238834118|gb|EEQ26370.1| excinuclease ABC subunit B [Lactobacillus gasseri 202-4]
          Length = 671

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/655 (52%), Positives = 456/655 (69%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G    EK Q+L G TG+GKTFTMA VI  + +P +V++
Sbjct: 10  FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
             T  L+ RND IVV+SVSCIYG+G    Y+  +V +  G  + +  LL  LV  QY R 
Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSISEGQEISRDVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A+RV  FG++I+ I E   LTG+ I   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVDSLTGEVIGEREQVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFVTNEQIMQRALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G+PP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL Q     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQTDH-KVEQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIKGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   L+QTIGRAAR
Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD+IT S++ AID T RRR  Q++ NK+H I P+++ + I +VI      D
Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608

Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 S  D     L+KK+ +  +K+L  QM  AA  L+FEEAA +RD I  L+
Sbjct: 609 EKENKESFADLNFDELTKKQKQTMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLQ 663


>gi|121637540|ref|YP_977763.1| excinuclease ABC subunit B [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224990015|ref|YP_002644702.1| excinuclease ABC subunit B [Mycobacterium bovis BCG str. Tokyo 172]
 gi|121493187|emb|CAL71658.1| Excinuclease ABC subunit B uvrB [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224773128|dbj|BAH25934.1| excinuclease ABC subunit B [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 698

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/690 (52%), Positives = 479/690 (69%), Gaps = 30/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 7   FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 67  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQSGGEFVEQVIRPTGLVDPKVV 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D +  E 
Sbjct: 546 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 605

Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773
             T  + +     + S+ +      G+A                      +K L  QM  
Sbjct: 606 DDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMA 665

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE AAR RDEI  LK     +G+D
Sbjct: 666 AARDLQFELAARFRDEIADLKRE--LRGMD 693


>gi|42784318|ref|NP_981565.1| excinuclease ABC subunit B [Bacillus cereus ATCC 10987]
 gi|81830915|sp|Q72XV1|UVRB_BACC1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|42740249|gb|AAS44173.1| excinuclease ABC, B subunit [Bacillus cereus ATCC 10987]
 gi|324329109|gb|ADY24369.1| excinuclease ABC subunit B [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 658

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 480/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+++AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMEIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|257469334|ref|ZP_05633428.1| excinuclease ABC subunit B [Fusobacterium ulcerans ATCC 49185]
 gi|317063581|ref|ZP_07928066.1| excinuclease ABC subunit B [Fusobacterium ulcerans ATCC 49185]
 gi|313689257|gb|EFS26092.1| excinuclease ABC subunit B [Fusobacterium ulcerans ATCC 49185]
          Length = 660

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/657 (52%), Positives = 479/657 (72%), Gaps = 5/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ + Y P+GDQP AI ++   I++  K Q+LLGVTGSGKTFT+A +IE  QRPA+++
Sbjct: 1   MFKIHSKYSPTGDQPEAIKKITDNINNGVKNQVLLGVTGSGKTFTVANIIEKTQRPALIL 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLYSE+K+FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SSIN++I+++R
Sbjct: 61  APNKTLAAQLYSEYKSFFPDNAVEYFVSYYDYYQPEAYIATTDTYIEKDSSINDEIEKLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT +L+ R D I+V+SVS IYG+GS E+Y +M + +     +++KEL+  L+  +Y+R
Sbjct: 121 HAATAALMNRRDVIIVASVSAIYGLGSAETYRKMTIPIDRQTGIDRKELIERLISIRYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIK 378
            DI   RG FR+ GD I+I+PS++E   +R+  +G+D+EEISE   LTGQKIR N+E I 
Sbjct: 181 NDIAFERGKFRIKGDVIDIYPSYME-TGYRLEYWGDDLEEISEINTLTGQKIRKNLERIV 239

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  + Y+T        +  I+++LK+ +   EK G+LLEAQRL+QR  YD+EM+   G 
Sbjct: 240 LYPATQYLTADGDNERILAEIQKDLKIEVEAFEKRGKLLEAQRLKQRTEYDIEMIREIGY 299

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSRYL+G+  GE P TL EY P+D L+F+DESH++IPQI GMY GD  RK  L 
Sbjct: 300 CKGIENYSRYLSGKKEGETPDTLLEYFPKDFLIFIDESHISIPQIRGMYNGDRARKTALV 359

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E GFRL + +DNRPL+FEE+  +   ++ VSATPG +E+E   G I EQ+IRPTG++DP 
Sbjct: 360 ENGFRLKAALDNRPLKFEEFRKISDQSVFVSATPGDFEVESSHGHIAEQLIRPTGILDPI 419

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R  + QV+D+ +EI + A +  R+L+T LTK+MAE+LTEY     +RV+YMHS++ T
Sbjct: 420 IEVRPTKNQVDDLLEEIRIRADKKERVLVTTLTKKMAEELTEYYLGFGVRVKYMHSDIDT 479

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LERI+II+ LR G+FD LVGINLLREGLDIPE  LVAIL+ADKEGFLRS+ SL+QTIGRA
Sbjct: 480 LERIDIIKGLRKGEFDALVGINLLREGLDIPEVSLVAILEADKEGFLRSRRSLVQTIGRA 539

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  +VILY D +T S++ AIDET RRR+ Q E+N  +NI+P+++ ++I E  D I L
Sbjct: 540 ARNIEGRVILYGDVMTDSMKQAIDETNRRRKIQNEYNVFNNIDPKTIVKEISE--DLINL 597

Query: 739 EDAATTNISIDAQQLSLSKKKG-KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +     N +    + + + +K  +  +  L+KQ+   +  L+FE A   RDE+ +LK
Sbjct: 598 DYGLDINETEGKDKKTFTSRKDIEKEIIKLQKQIAKLSKELDFENAIIKRDEMTKLK 654


>gi|312142862|ref|YP_003994308.1| excinuclease ABC, B subunit [Halanaerobium sp. 'sapolanicus']
 gi|311903513|gb|ADQ13954.1| excinuclease ABC, B subunit [Halanaerobium sp. 'sapolanicus']
          Length = 673

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/667 (53%), Positives = 477/667 (71%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  +   GDQP AI  L +GI+   K Q LLG TG+GKTFTMA+++E + +P +V+A
Sbjct: 6   FKLKAPFEAKGDQPEAIKNLARGINKGYKHQTLLGATGTGKTFTMARLVEEVNKPTLVIA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK++S+NE+I+++R 
Sbjct: 66  HNKTLAAQLTSEFKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIEKDASVNEEIEKLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D ++V+SVSCIYG+GS + Y  + + +K+G  +E+KE+  SL   QY R 
Sbjct: 126 SATTSLFERRDVLIVASVSCIYGLGSPDDYLDLSLHIKVGKIMERKEITRSLTFMQYSRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD I+IFP++  DVA RV +FG++IE I+    +TG+    ++ + IY
Sbjct: 186 DMDTSRGHFRVKGDVIDIFPAY-RDVAIRVELFGDEIERITRINTVTGEVQAEIDEMTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VTP   +  A+K I  EL+ RL EL  E RL+EAQRLEQR  YDLEMLE  G C 
Sbjct: 245 PASHFVTPEDKVKRAIKTISAELEERLEELRSENRLVEAQRLEQRTRYDLEMLEQMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L GR  G  P  L +Y P+D ++ +DESH+T+PQI GM+ GD  RK  L EY
Sbjct: 305 GIENYARHLAGREKGSRPMALLDYFPDDFMVIIDESHMTVPQIGGMFAGDRSRKEKLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+  + P  + VSATPG +E +  Q I VEQIIRPTGLVDP V+
Sbjct: 365 GFRLPSALDNRPLNFEEFQEVVPQAVYVSATPGPYEKKHSQQI-VEQIIRPTGLVDPEVD 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++++ +EI    +   R+L+T LTK+M+EDLTEYL E  IRVRY+HS++ T+E
Sbjct: 424 VRPTKGQIDNLLEEIRQVVKDEERVLVTTLTKKMSEDLTEYLAEAGIRVRYLHSDIDTIE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FDVLVGINLLREGLD+PE   VAILDADKEGFLRS+ +L+QTIGRAAR
Sbjct: 484 RSEIIRDLRLGEFDVLVGINLLREGLDLPEVSRVAILDADKEGFLRSERALVQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           NV  KVI+YAD IT S++ AIDET RRRE Q+E+N++H+I P+++ + + +V+ P+ +  
Sbjct: 544 NVGGKVIMYADKITDSMRKAIDETRRRREIQIEYNQEHDITPETIIKPVRDVLRPVEMVV 603

Query: 739 -EDAATTNISIDAQQLSLSKKKGKAHLK---------SLRKQMHLAADNLNFEEAARIRD 788
            ED +       A +    +K+  A +           L ++M  AA NL FE AA+IRD
Sbjct: 604 SEDKSRYYDKSKAGESEEERKENYAQMSRKEIHQLILDLEEEMEEAAGNLEFEIAAQIRD 663

Query: 789 EIKRLKS 795
           EI+ L++
Sbjct: 664 EIEELEA 670


>gi|15608771|ref|NP_216149.1| excinuclease ABC subunit B [Mycobacterium tuberculosis H37Rv]
 gi|31792819|ref|NP_855312.1| excinuclease ABC subunit B [Mycobacterium bovis AF2122/97]
 gi|148661428|ref|YP_001282951.1| excinuclease ABC subunit B [Mycobacterium tuberculosis H37Ra]
 gi|289443086|ref|ZP_06432830.1| excinuclease ABC, B subunit [Mycobacterium tuberculosis T46]
 gi|54039842|sp|P67423|UVRB_MYCBO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|54042750|sp|P67422|UVRB_MYCTU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|2113917|emb|CAB08886.1| PROBABLE EXCINUCLEASE ABC (SUBUNIT B-HELICASE) UVRB [Mycobacterium
           tuberculosis H37Rv]
 gi|31618409|emb|CAD96327.1| Excinuclease ABC subunit B uvrB [Mycobacterium bovis AF2122/97]
 gi|148505580|gb|ABQ73389.1| excinuclease ABC subunit B [Mycobacterium tuberculosis H37Ra]
 gi|289416005|gb|EFD13245.1| excinuclease ABC, B subunit [Mycobacterium tuberculosis T46]
 gi|328459079|gb|AEB04502.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis KZN
           4207]
          Length = 698

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/690 (52%), Positives = 479/690 (69%), Gaps = 30/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 7   FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 67  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D +  E 
Sbjct: 546 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 605

Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773
             T  + +     + S+ +      G+A                      +K L  QM  
Sbjct: 606 DDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMA 665

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE AAR RDEI  LK     +G+D
Sbjct: 666 AARDLQFELAARFRDEIADLKRE--LRGMD 693


>gi|329667663|gb|AEB93611.1| excinuclease ABC subunit B [Lactobacillus johnsonii DPC 6026]
          Length = 671

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/655 (52%), Positives = 457/655 (69%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G    EK Q+L G TG+GKTFTMA VI  + +P +V++
Sbjct: 10  FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
             T  L+ RND IVV+SVSCIYG+G    Y+  +V L  G  + +  LL  LV  QY R 
Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSLSEGQEISRDVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A+RV  FG++I+ I E   LTG+ I   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVDSLTGEVIGEREQVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFVTNEQIMERALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G+PP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL Q     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQTDH-KVEQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  E+N   ++  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIKGQIDDLVGEVNKRIERNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   L+QTIGRAAR
Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD+IT S++ AID T RRR  Q++ NK+H I P+++ + I +VI      D
Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRCLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608

Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 S  D     L+KK+ +  +K+L  QM  AA  L+FEEAA +RD I  LK
Sbjct: 609 DKENKESFADLNFDELTKKQKQNMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLK 663


>gi|300741423|ref|ZP_07071444.1| excinuclease ABC subunit B [Rothia dentocariosa M567]
 gi|300380608|gb|EFJ77170.1| excinuclease ABC subunit B [Rothia dentocariosa M567]
          Length = 722

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/703 (51%), Positives = 481/703 (68%), Gaps = 55/703 (7%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIA+L + + + EK  +L+G TG+GK+ T A ++E++QRP +VM 
Sbjct: 14  FEVVSPYQPAGDQPKAIAELTERVENGEKDIVLMGATGTGKSATAAWLVESVQRPTLVMV 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E +   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+RH
Sbjct: 74  QNKTLAAQLANELRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVS+VSCIYG+G+ E Y + +V LK GD +++ +LL   V  QY R 
Sbjct: 134 SATNSLLTRRDVVVVSTVSCIYGLGTPEEYVEQMVTLKRGDEIDRDDLLRQFVNMQYARN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E+ A R+  FG++IE I   +PLTG+ IR  + + ++
Sbjct: 194 DMDFHRGTFRVRGDTVEIIPMY-EEHAIRIEFFGDEIEAIYTLHPLTGEVIREEDEMYVF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I++EL+ RL  LE +G+LLEAQRL  R TYDLEM+E  G   
Sbjct: 253 PASHYVAGPERMARAIASIEDELQERLQTLESQGKLLEAQRLRMRTTYDLEMMEQMGFTS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR+ G  P  L +Y P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 313 GIENYSRHIDGRSAGSAPHCLLDYFPDDFLLIIDESHVTVPQIGAMYEGDMSRKRTLVEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+++E+      TI +SATPG +EL Q  G  VEQIIRPTGLVDP + 
Sbjct: 373 GFRLPSAMDNRPLKWDEFLERIGQTIYLSATPGKYELSQADGY-VEQIIRPTGLVDPEII 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ ++I    ++  R+L+T LTKRMAEDLTEYL +  +RV+Y+HS+V TL+
Sbjct: 432 VKPTKGQIDDLLEQIQERTERDERVLVTTLTKRMAEDLTEYLVQHGVRVQYLHSDVDTLK 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 492 RVELLRELRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YADT+T S++ AIDET RRRE Q  +N++H I+PQ +++KI ++ D +  E+
Sbjct: 552 NVSGQVHMYADTVTDSMRTAIDETNRRREIQQAYNREHGIDPQPLRKKIADITDVLAREE 611

Query: 741 AATTNISIDAQQLSLSKKKG------------------------------KAH------- 763
             T  +     QL  S KKG                              KA        
Sbjct: 612 EDTHEL----LQLRKSGKKGSRTVEAGAKTGSSTSSKIAASTPESDALLAKAQDRVRADG 667

Query: 764 ------------LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                       ++ L +QM LAA+NL FE AAR+RDE+  LK
Sbjct: 668 LAAEPAEDLLELIEQLSEQMRLAAENLQFELAARLRDELTDLK 710


>gi|289423233|ref|ZP_06425044.1| excinuclease ABC, B subunit [Peptostreptococcus anaerobius 653-L]
 gi|289156333|gb|EFD04987.1| excinuclease ABC, B subunit [Peptostreptococcus anaerobius 653-L]
          Length = 659

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/661 (52%), Positives = 469/661 (70%), Gaps = 16/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+D+ P GDQP AI  + K I ++ K Q L+GVTGSGKTF MA +IE +++P +++A
Sbjct: 4   FKIQSDFKPMGDQPKAIDTICKSIENKNKFQTLVGVTGSGKTFAMANIIERVKKPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV  +DTYIEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT ++LER D I++SSVSCIYG+G  + Y ++++ L+ G   ++ +++  LV+ QY+R 
Sbjct: 124 SATAAILERQDTIIISSVSCIYGLGDPKDYKELMLSLRPGMMRDRDDVIRRLVEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  IRGTFRV GD +EIFP+  +D A RV  FG++I+ I+E   +TG+ +     I I+
Sbjct: 184 DVNFIRGTFRVRGDILEIFPASTDDKAIRVEFFGDEIDRITEIDYITGKVVAERGHIAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    + +A+  I+EEL+  + + +   +LLEAQR+EQR  YD+EML   G CQ
Sbjct: 244 PASHYVTTPERIESAIISIEEELEKAIADFKANDKLLEAQRIEQRTKYDIEMLREIGFCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++TGR  GE P TL ++ P+D LL VDESHVT+PQ+ GMY GD  RK +L E 
Sbjct: 304 GIENYSRHITGRKKGEKPYTLMDFFPDDFLLIVDESHVTLPQVRGMYGGDRSRKKSLIEN 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRL S  DNRPL FEE+       +  +ATPG +E+E    +  EQIIRPTGL+DP ++
Sbjct: 364 GFRLESAYDNRPLNFEEFESNLNQVLFTTATPGPYEMEHTD-VFAEQIIRPTGLLDPLID 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   + G R+L+T LTK+M+EDLT YL    I+V+Y+HS++ TLE
Sbjct: 423 VRPVNNQIDDLLVEINKTIESGERVLITTLTKKMSEDLTNYLKGVGIKVKYLHSDIVTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLGKFDVLVGINLLREGLDIPE  L+AILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT S++ AIDET RRR  Q+ +N++H I P+++ + I + I       
Sbjct: 543 NSNGRVIMYADKITDSMKRAIDETERRRSIQMAYNEEHGIVPKTISKNIRDNI------- 595

Query: 741 AATTNISIDAQQLSLSKKKG-------KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
            A T ++ +A+   LS  KG          +  L+ +M   A+ LNFE AA +RD++  L
Sbjct: 596 -AITRVAEEAESYDLSGIKGLKDQDEIATTIIILKSKMMEEAEKLNFELAAELRDKVTEL 654

Query: 794 K 794
           +
Sbjct: 655 E 655


>gi|172036961|ref|YP_001803462.1| excinuclease ABC subunit B [Cyanothece sp. ATCC 51142]
 gi|171698415|gb|ACB51396.1| excinuclease ABC subunit B [Cyanothece sp. ATCC 51142]
          Length = 670

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/666 (52%), Positives = 472/666 (70%), Gaps = 20/666 (3%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++Q  + P+GDQP+AI QL + +    + Q LLG TG+GKTF++A VIE + +P +V+
Sbjct: 6   IFELQAPFKPTGDQPSAIKQLTQSLQENNRFQTLLGATGTGKTFSIAAVIENIGKPTLVL 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID +R
Sbjct: 66  AHNKTLAAQLCNELRQFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKSASINDEIDMLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSATRSL ER D IVV+S+SCIYG+G    Y +  V L++G  V+Q++LL  LV  QY R
Sbjct: 126 HSATRSLFERKDVIVVASISCIYGLGMPAEYLKASVPLEVGKEVDQRQLLRDLVTVQYSR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ + +++ I I
Sbjct: 186 NDLDLQRGRFRVKGDVLEIVPAY-EDRVVRVEFFGDEIDAIRYLDPVTGEILNSLKNINI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y   H+VTP   L  A + I+ ELK +++ LEK G+LLEAQR++QR  YDLE+L   G C
Sbjct: 245 YPARHFVTPEEQLEAACEAIEIELKEQVLNLEKAGKLLEAQRIDQRTRYDLELLREVGYC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +ENYSR+L GR PG PP  L +Y P+D LL VDESHVT+PQI GMY GD  RK  L +
Sbjct: 305 NGVENYSRHLAGRKPGSPPECLVDYFPKDWLLIVDESHVTVPQIRGMYNGDQARKKVLID 364

Query: 500 YGFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +GFRLPS  DNRPL+ EE W+ +    I VSATPG+WE+EQ +  ++EQIIRPTG++DP 
Sbjct: 365 HGFRLPSAADNRPLKSEEFWDKVN-QCIFVSATPGNWEIEQSEDRVIEQIIRPTGVLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R    QV+D+  EI    ++  R+L+T LTKRMAEDL+EY  ER+++V+Y+HSE+K+
Sbjct: 424 IFVRPTEGQVDDLLGEIKQRVKRKERVLITTLTKRMAEDLSEYFQERDVKVQYLHSEIKS 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ERIEI++ LR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 484 IERIEILQALRNGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAEKSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           AR+VN + ILY D +T S+  AI+ET RRR  Q+ +NK+HNI PQ + ++    I   L 
Sbjct: 544 ARHVNGQAILYGDNLTDSMIKAIEETDRRRNIQMAYNKRHNITPQPIIKRSSNAILSFL- 602

Query: 739 EDAATTNIS--IDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                 +IS  ++AQQL         L   K    ++ L +QM  +A NL FEEAA+ RD
Sbjct: 603 ------DISRRLNAQQLEEVYTQADDLPLDKVPELIQQLEQQMQESAKNLEFEEAAKYRD 656

Query: 789 EIKRLK 794
           +IK L+
Sbjct: 657 KIKHLR 662


>gi|78780126|ref|YP_398238.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9312]
 gi|78713625|gb|ABB50802.1| Excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9312]
          Length = 679

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/670 (52%), Positives = 469/670 (70%), Gaps = 17/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++Q  Y P+GDQP AI +L++G++S ++ Q LLG TG+GKTFT+A VI+   RPA+V+A
Sbjct: 4   YKLQAPYEPNGDQPEAIKKLVRGVNSGKEFQTLLGATGTGKTFTIANVIQQTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G S+  +  L SLV+ QY R 
Sbjct: 124 SATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFEVGKSINLRSSLRSLVENQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI I RG FR+ GD +EI P++ ED   R+ +FG+++E I    P TG+ + ++E I +Y
Sbjct: 184 DIEITRGRFRIKGDVLEIGPAY-EDRLIRIELFGDEVEAIRYVDPTTGEILESLEQISVY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L +A+  IK ELK +L +   EG+LLEAQRLEQR  YDLEML+  G C 
Sbjct: 243 PAKHFVTPKERLESAISAIKSELKTQLDKFTYEGKLLEAQRLEQRTKYDLEMLKEVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L+GR  G PP  L +Y P+D LL VDESHVT PQ+  MY GD  RK  L ++
Sbjct: 303 GVENYARHLSGREEGSPPECLIDYFPKDWLLVVDESHVTCPQLHAMYNGDQSRKKVLIDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+      T+ +SATPG WEL+QC G  VEQ+IRPTG++DP ++
Sbjct: 363 GFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWELDQCNGEFVEQVIRPTGVLDPVID 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  Q+ED+  EI + A++  R+L+T LTKRMAEDLT++L E  +RVRY+HSE+ ++E
Sbjct: 423 VRPSEGQIEDLLSEIRIRAEKNQRVLVTTLTKRMAEDLTDFLSENKVRVRYLHSEIHSIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII+DLR+G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           +V    +LYAD  T S++ AI ET RRR  Q +HN+ + I P+   +KI   I   L   
Sbjct: 543 HVEGVALLYADNFTDSMKRAISETERRRTIQKKHNQDNGITPKPAGKKIENSILSFLELS 602

Query: 738 --LEDAATT----NISIDAQQLSLSKKKGKA------HL-KSLRKQMHLAADNLNFEEAA 784
             L+    +    NI  +   + L+    +       HL   L  +M  AA  LNFEEAA
Sbjct: 603 RKLDAGGLSKDLINIVNNKTDVILNASDNQCLIEELPHLIDKLEMKMKDAAKELNFEEAA 662

Query: 785 RIRDEIKRLK 794
            +RD IK+L+
Sbjct: 663 NLRDRIKKLR 672


>gi|228942302|ref|ZP_04104841.1| UvrABC system protein B [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228975231|ref|ZP_04135789.1| UvrABC system protein B [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981869|ref|ZP_04142164.1| UvrABC system protein B [Bacillus thuringiensis Bt407]
 gi|228777981|gb|EEM26253.1| UvrABC system protein B [Bacillus thuringiensis Bt407]
 gi|228784510|gb|EEM32531.1| UvrABC system protein B [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817346|gb|EEM63432.1| UvrABC system protein B [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326942958|gb|AEA18854.1| excinuclease ABC subunit B [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 658

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +NK+H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNKEHGITPKTIQKGVRDVIRATTTAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|260890126|ref|ZP_05901389.1| hypothetical protein GCWU000323_01288 [Leptotrichia hofstadii
           F0254]
 gi|260860149|gb|EEX74649.1| excinuclease ABC subunit B [Leptotrichia hofstadii F0254]
          Length = 635

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/624 (55%), Positives = 461/624 (73%), Gaps = 5/624 (0%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           Q+LLGVTGSGKTFT+A VIE + RPA++MAPNK LAAQLY+E+K FFP NAVEYFVSYYD
Sbjct: 11  QILLGVTGSGKTFTVANVIEKINRPALIMAPNKTLAAQLYNEYKQFFPENAVEYFVSYYD 70

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
           YYQPEAY+ +TDTYIEK+SSIN++ID++RH+AT +LL R D I+V+SVS IYG+GS E+Y
Sbjct: 71  YYQPEAYIMQTDTYIEKDSSINDEIDKLRHAATAALLNRRDVIIVASVSAIYGLGSPEAY 130

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            +  + + +    E+ EL+  L+  +Y+R DI   RG FRV GD +++ PS+ +D  +R 
Sbjct: 131 KKRSIPIDVETGFERNELIKRLISLRYERNDIAFERGKFRVKGDILDLHPSY-QDTGYRF 189

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             FG+D+E ISE   LTGQKIRN++ I I   +HY+T   T     + IK+E++ R+   
Sbjct: 190 EFFGDDLESISEINTLTGQKIRNIKRITIMPATHYLTNEDT-KVMFEAIKKEMEERVHFF 248

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
           +KEG+LLEAQR+EQR  YDLEM+E  G C+ +ENYSRYLTG++ GE P TL +Y PED +
Sbjct: 249 QKEGKLLEAQRIEQRTKYDLEMIEEIGYCKGVENYSRYLTGKSEGEAPDTLIDYFPEDLV 308

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
           +F+DESH+++PQI+GMY+GD  RK +L + GFRLPS  DNRPL+FEE+    P  + +SA
Sbjct: 309 VFLDESHISVPQINGMYKGDRARKQSLIDNGFRLPSAYDNRPLKFEEFFEKVPQVVYISA 368

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
           TP  +ELE   G +VEQ++RPTG+++P ++IR  + Q++D+ DEI     +  RIL+T L
Sbjct: 369 TPSDYELEHSNGEVVEQLVRPTGIIEPSIDIRETKNQIDDLMDEIKTRTARKERILVTTL 428

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MAE+LT+Y  E  I+V+YMHS++ TLER EIIR LR G+FDVLVGINLLREGLDIPE
Sbjct: 429 TKKMAEELTDYYLEYGIKVKYMHSDIDTLERTEIIRGLRKGEFDVLVGINLLREGLDIPE 488

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
             LVAIL+ADKEG+LRS+ SLIQT+GRAARNV   VILYAD IT S+Q AIDE  RRRE 
Sbjct: 489 VSLVAILEADKEGYLRSRRSLIQTMGRAARNVEGHVILYADRITGSMQEAIDEVNRRREV 548

Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQ 770
           Q ++N ++NINP+S+  +I E I    +E     N +I   +   S+K  +  +K L KQ
Sbjct: 549 QEKYNLENNINPKSIVREIAESIVDYEIEKENEANKAIKQYK---SEKDVEKEIKKLDKQ 605

Query: 771 MHLAADNLNFEEAARIRDEIKRLK 794
           +   A+ LNFEEA ++RD++  LK
Sbjct: 606 IKKLAEELNFEEAIKLRDKMNELK 629


>gi|313113936|ref|ZP_07799493.1| excinuclease ABC subunit B [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310623731|gb|EFQ07129.1| excinuclease ABC subunit B [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 685

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/654 (53%), Positives = 461/654 (70%), Gaps = 7/654 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  L+KG+   ++ Q LLGVTGSGKTFTMA VI    RP +V+A
Sbjct: 6   FELVSSYQPTGDQPQAIETLVKGVERGDRCQTLLGVTGSGKTFTMANVIAKCNRPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF++FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++IDR+RH
Sbjct: 66  HNKTLAAQLCTEFRSFFPNNAVEYFVSYYDYYQPEAYIPSTDTYIEKDSAINDEIDRLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +G    Y  M++ L+ G  +E+ EL   LV  QY+R 
Sbjct: 126 SATAALSERRDVIIVASVSCIYSLGDPIDYRSMVISLRPGMQMERDELCQKLVTLQYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  +R  FRV GD ++I+ +++ ++A RV  FG++I+ I+EF PLTG K   V+ + I+
Sbjct: 186 DVNFVRNKFRVHGDIVDIYLAYMSELAIRVEFFGDEIDRITEFNPLTGAKQNVVKHVAIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+        A++ I+ E   ++ +   EG+L+EAQR+ QR  YD+EML   G C+
Sbjct: 246 PASHYIVSAEKKAAALEKIRAECDAQVKQFTAEGKLIEAQRIAQRTNYDMEMLNEVGMCK 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  L+GR PG  P TL +Y P+D LLFVDESHVT+PQ+  MY GD+ RK TL EY
Sbjct: 306 GIENYSAVLSGRAPGSMPTTLLDYFPDDFLLFVDESHVTLPQVRAMYGGDYARKKTLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE        I VSATPG +E  Q    + +Q+IRPTGL+DP + 
Sbjct: 366 GFRLPSAFDNRPLKFEEVESKLNQMIFVSATPGDYE-RQNSTQVAQQVIRPTGLLDPLIS 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV D+  EIN   Q+  R+L+T LTK+MAEDLT+YL E+ I+V+YMH EV T E
Sbjct: 425 VRPVEGQVVDLLGEINTRIQRHERVLVTTLTKKMAEDLTDYLTEQGIKVKYMHHEVDTFE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII+DLRLG  DV+VGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 485 RMEIIKDLRLGSIDVVVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S+  AI ET RRR  Q+ +NK+H I P+++   +  + D I + D
Sbjct: 545 NAEGLVIMYADIVTDSMDRAITETERRRAIQMAYNKEHGIVPKTI---VKAIADSIEISD 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A  N  ++ ++  + + + +A ++ L ++M  AA  L FE AA +RD+I RL+
Sbjct: 602 KA-ENAKLNTRR--MGRMEREAAIERLTREMKEAAKLLEFEHAAFLRDQIDRLR 652


>gi|227889627|ref|ZP_04007432.1| excision endonuclease subunit UvrB [Lactobacillus johnsonii ATCC
           33200]
 gi|227849770|gb|EEJ59856.1| excision endonuclease subunit UvrB [Lactobacillus johnsonii ATCC
           33200]
          Length = 671

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/655 (52%), Positives = 456/655 (69%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G    EK Q+L G TG+GKTFTMA VI  + +P +V++
Sbjct: 10  FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
             T  L+ RND IVV+SVSCIYG+G    Y+  +V L  G    +  LL  LV  QY R 
Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSLSEGQEFSRDVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A+RV  FG++I+ I E   LTG+ I   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVDSLTGEVIGEREQVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFVTNEQIMERALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G+PP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL Q     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQTDH-KVEQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  E+N   ++  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIKGQIDDLVGEVNKRIERNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   L+QTIGRAAR
Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD+IT S++ AID T RRR  Q++ NK+H I P+++ + I +VI      D
Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608

Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 S  D     L+KK+ +  +K+L  QM  AA  L+FEEAA +RD I  LK
Sbjct: 609 DKENKESFADLNFDELTKKQKQNMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLK 663


>gi|148822840|ref|YP_001287594.1| excinuclease ABC subunit B [Mycobacterium tuberculosis F11]
 gi|148721367|gb|ABR05992.1| excinuclease ABC subunit B (helicase) uvrB [Mycobacterium
           tuberculosis F11]
          Length = 698

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/690 (52%), Positives = 479/690 (69%), Gaps = 30/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 7   FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 67  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKHNLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D +  E 
Sbjct: 546 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 605

Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773
             T  + +     + S+ +      G+A                      +K L  QM  
Sbjct: 606 DDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMA 665

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE AAR RDEI  LK     +G+D
Sbjct: 666 AARDLQFELAARFRDEIADLKRE--LRGMD 693


>gi|326201746|ref|ZP_08191617.1| excinuclease ABC, B subunit [Clostridium papyrosolvens DSM 2782]
 gi|325988346|gb|EGD49171.1| excinuclease ABC, B subunit [Clostridium papyrosolvens DSM 2782]
          Length = 657

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 474/655 (72%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AIA++ K I   +K Q LLGVTGSGKT+T+AKVIE +Q+P +V+A
Sbjct: 4   FEVISPYKPMGDQPEAIAKISKAIQEGQKHQTLLGVTGSGKTYTVAKVIEQVQKPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP+N VEYFVSYYDYYQPEAY+P TDTYIEK+SS+NE+ID++RH
Sbjct: 64  HNKTLAAQLCSEFKEFFPNNVVEYFVSYYDYYQPEAYIPSTDTYIEKDSSVNEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G  E Y+ +++ L++G   ++ E++  LV  QY+R 
Sbjct: 124 SATAALFERRDVIIVASVSCIYGLGDPEDYTDLMLSLRVGMQKDRDEVIRKLVDIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I   RG FR  GD +EIFP++  +   RV  FG++IE I+E   LTG+ I   E I ++
Sbjct: 184 EIDFRRGRFRARGDVLEIFPANSSEKVLRVEFFGDEIERITEVDYLTGEIIGTREHIAVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T RP ++ AM  I++EL+ RL + + EG+LLEAQRLEQR  YDLEM+   G CQ
Sbjct: 244 PASHYATTRPKMDRAMVTIEKELEERLEQFKMEGKLLEAQRLEQRTRYDLEMMSEIGFCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++GR PG  P TL +Y P+D LL +DESHVT+ Q+  MY GD  RK +L EY
Sbjct: 304 GIENYSRHISGREPGSSPYTLMDYFPDDYLLVIDESHVTVSQVGAMYNGDRSRKESLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+       + VSATP  +E E     IVEQI+RPTGL+DP + 
Sbjct: 364 GFRLPSAFDNRPLKFHEFEERVNQVVYVSATPAVYEREHSTQ-IVEQILRPTGLIDPEII 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EIN  A++  R+L+T LTK+MAEDLT+Y+ E +I+V+Y+HS+V T E
Sbjct: 423 IRPVKGQIDDLIGEINTRAEKKQRVLVTTLTKKMAEDLTDYMKELDIKVKYLHSDVVTFE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMEIIRDLRLGVFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD IT S+  AI ET RRR+ Q+++NKKH I P ++++ +  V++   + +
Sbjct: 543 NSEGKVIMYADNITGSMHRAISETNRRRQIQMDYNKKHGIVPTTIQKSVRNVLEATKVAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                 +   +   +S+++ +  +  L+ +M  AA +L FE AA +RD+I+ L+ 
Sbjct: 603 EEDKYYA-GKKATHMSEQELEKLIAKLQSEMKQAAADLQFERAAELRDKIESLRG 656


>gi|229050827|ref|ZP_04194379.1| UvrABC system protein B [Bacillus cereus AH676]
 gi|228722483|gb|EEL73876.1| UvrABC system protein B [Bacillus cereus AH676]
          Length = 658

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/655 (54%), Positives = 480/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   E + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL + G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNENGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|307326043|ref|ZP_07605241.1| excinuclease ABC, B subunit [Streptomyces violaceusniger Tu 4113]
 gi|306888265|gb|EFN19253.1| excinuclease ABC, B subunit [Streptomyces violaceusniger Tu 4113]
          Length = 712

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/699 (50%), Positives = 473/699 (67%), Gaps = 37/699 (5%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           +    + +  F++ + Y PSGDQP AIA L + +   EK  +LLG TG+GK+ T A +IE
Sbjct: 4   VTQLERKVAPFEVVSSYQPSGDQPTAIADLERRVRGGEKDVVLLGATGTGKSATTAWMIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 64  KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +V+LK+G+ +++ +LL 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVRLKVGEEIDRDQLLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ 
Sbjct: 184 RFVDIQYARNDMAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I     + ++  SHYV     +  A+  I+ EL   L  LEK+G+LLEAQRL  R TYD+
Sbjct: 243 ISEDRELYVFPASHYVAGPERMEKAIAGIEAELTETLARLEKQGKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   G+C  IENYS ++ GR  G PP TL +Y PED LL +DESHVT+PQI  MY GD
Sbjct: 303 EMMRQIGTCSGIENYSLHIDGRETGSPPHTLLDYFPEDFLLVIDESHVTVPQIGAMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL E+GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G  VEQIIR
Sbjct: 363 ASRKRTLIEHGFRLPSALDNRPLKWEEFLKRVGQTVYLSATPGPFELSRGDG-FVEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y+ E  I+VR
Sbjct: 422 PTGLIDPEVVVKPTEGQIDDLIHEIRTRTEKDERVLVTTLTKKMAEDLTDYMLELGIQVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R+LR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS
Sbjct: 482 YLHSDVDTLRRVELLRELRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD +T ++  AIDET RRR+KQ+ +NK + I+PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADKVTAAMAKAIDETNRRRDKQIAYNKANKIDPQPLRKKIN 601

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKA---------------------------- 762
           +++  I  ED  T  +     +     K  K                             
Sbjct: 602 DIVAQIAREDVDTEQLLGTGYRKVKDGKDAKTPVPAAGGKAAKGGKAAKGKAKEEVLTDR 661

Query: 763 -------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   ++ +  +M  AA  L FE AAR+RDE+  LK
Sbjct: 662 PAAELAEQIEEMTDRMRAAAAELQFEVAARLRDEVSELK 700


>gi|297624758|ref|YP_003706192.1| excinuclease ABC subunit B [Truepera radiovictrix DSM 17093]
 gi|297165938|gb|ADI15649.1| excinuclease ABC, B subunit [Truepera radiovictrix DSM 17093]
          Length = 682

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/655 (52%), Positives = 470/655 (71%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++++ + P GDQP AIA+L++G+    + Q LLG TG+GKTFTMAK+IEA QRPA+++A
Sbjct: 3   LRVESPFSPRGDQPQAIAELVEGLGDGLRFQTLLGATGTGKTFTMAKIIEAAQRPALILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNKIL AQL +EF++FFP  AVE+F+SYYDYYQPEAYVP  D +IEK+++IN +++R+RH
Sbjct: 63  PNKILTAQLAAEFRDFFPGAAVEFFISYYDYYQPEAYVPARDLFIEKDANINAELERLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S TR+LL R D IVV+SVS IYG+GS ++Y Q+ + L++G    + E+L  LV QQY+R 
Sbjct: 123 STTRNLLTRRDTIVVASVSAIYGLGSPDTYQQLNLILRVGMRRNRDEILEQLVTQQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ +  G FRV GD +E++ ++ ++   R+ +FG++I+ ++   P+TG ++  +ET  ++
Sbjct: 183 DVELAAGRFRVKGDVVEVWAAY-DEAPLRIELFGDEIDRLTMTDPVTGAELAELETTTVF 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HYVTP   L  A+  I+ +L+ RL   E+ G+LLE QRL++R  YDLEML+T G C 
Sbjct: 242 PAKHYVTPYEQLAPAIAQIERDLEARLEFFERAGKLLEKQRLKERTLYDLEMLKTLGYCS 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL GR PGEPP TL +Y P+D + F+DESHV +PQI GMY GD  RK TL +Y
Sbjct: 302 GIENYSRYLDGRQPGEPPHTLLDYFPDDFITFLDESHVMLPQIRGMYNGDRARKQTLVDY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL+ +E+       I VSATP  WE      +  EQIIRPTGLVDP + 
Sbjct: 362 GFRLPAALDNRPLKEDEFLARIGQAIFVSATPADWEYRHSDRV-AEQIIRPTGLVDPKIT 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ +R Q++D+   I   A +G R+L+T LTK+MAEDLTEY  ++ +RVRYMHS++  +E
Sbjct: 421 VKPSRGQIDDLVFAIRERAARGERVLVTTLTKKMAEDLTEYFAQQGLRVRYMHSDIDAVE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  IIRDLRLG FDVL+GINLLREGLD+PE  LVAILDADK GFLRS  SLIQTIGRAAR
Sbjct: 481 RQVIIRDLRLGHFDVLIGINLLREGLDLPEVSLVAILDADKTGFLRSGRSLIQTIGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +V LYAD +++++Q AI ET RRREKQL +N  HNI P SV+++I +VI     E+
Sbjct: 541 NVNGEVFLYADVVSEAMQDAISETERRREKQLAYNAAHNITPASVQKRIRDVIRGD--EE 598

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            A  +  +   +  L++   K  L +L  +M  A++ L+FE AA +RD I+ L++
Sbjct: 599 GAEADAQLSPWERELAQDDLKQELAALEVEMWRASEALDFERAAAVRDRIRELEA 653


>gi|238544545|dbj|BAH60897.1| putative excinuclease ABC subunit B [Desulfotignum balticum]
          Length = 665

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/661 (53%), Positives = 464/661 (70%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F +++ + P+GDQP AI  L +G+ + E  Q+LLGVTGSGKTFTMA +I  +++P++
Sbjct: 1   MSLFHLKSSFSPTGDQPKAIEYLTQGVKANEPHQVLLGVTGSGKTFTMANIIAEVEKPSL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++APNK LAAQLY+EFK  FP N VEYFVSYYDYYQPEAYVP +DTYI+K+SSIN+ ID+
Sbjct: 61  IIAPNKTLAAQLYNEFKLLFPDNCVEYFVSYYDYYQPEAYVPSSDTYIQKDSSINDIIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSATRS+L R D IVV+SVSCIYG+G+ E Y  + + L     + +  L+  LV+ QY
Sbjct: 121 MRHSATRSVLARRDVIVVASVSCIYGLGAPEDYLDLRITLARDMEISRDTLIRKLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D    RG FRV GD +E+FP++ ED A R+  FG+ IEEI E  PL G+ +   +  
Sbjct: 181 TRNDTDFHRGVFRVRGDRVEVFPAYEEDRAVRIDFFGDVIEEICEIDPLKGEILTTFDQT 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SHYVT   T   A++ I  EL+ RL +L  + RL+EAQRLE+R  YD+EML   G
Sbjct: 241 AIYPASHYVTKSQTRKRAVEAIFAELEERLAQLRADNRLVEAQRLEERTRYDMEMLNEIG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTGRNPGEPPPTL +Y+P D LLF DESH+++ Q++GMY+ D  RK TL
Sbjct: 301 YCTGIENYSRHLTGRNPGEPPPTLLDYMPNDFLLFFDESHISVSQLAGMYKADRSRKLTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL F E++      I VSATP  +ELE+    + EQI+RPTGL+DP
Sbjct: 361 VEYGFRLPSAVDNRPLAFHEFSARTSRIIYVSATPADYELEKSGIRVAEQIVRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V++R A TQV+D+Y EI    +   R+L+T LTKRMAEDLTEY  +  I+V+Y+HS++ 
Sbjct: 421 KVQVRDATTQVDDLYQEIIKRVEADERVLVTTLTKRMAEDLTEYYADLGIKVKYLHSDIV 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ERIEII+DLR G FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS  S IQ  GR
Sbjct: 481 TMERIEIIQDLRRGVFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSFRSFIQIFGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VI+YA   TKS++ A+ ET RRR+ Q  +N+ H+I P ++++++     P  
Sbjct: 541 AARNVYGRVIMYAQKETKSMKKALAETRRRRKIQQAYNEAHHIVPATIQKQLNVFKYPA- 599

Query: 738 LEDAA-----TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             D A     T ++  D Q         +  ++ L  +M  AA+NL FE+AA  RD+I++
Sbjct: 600 -SDTAGSGQETPSVHEDIQAYDGDDIDLEDLIRDLEYKMKKAAENLEFEQAAVFRDKIRQ 658

Query: 793 L 793
           L
Sbjct: 659 L 659


>gi|300813073|ref|ZP_07093451.1| excinuclease ABC, B subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300495914|gb|EFK31058.1| excinuclease ABC, B subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 680

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/657 (52%), Positives = 468/657 (71%), Gaps = 2/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQ  AI QL  G  + +K Q+L G TG+GKT+TMA VI  M +P +V+ 
Sbjct: 10  FELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAKMNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +L+ RND IVV+SVSCIYG+G    Y+  ++ +  G   E+  LL  LV  QY R 
Sbjct: 130 AATSALMSRNDVIVVASVSCIYGLGDPREYAASVLNVYTGQEYERNTLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+   D A+R+  FG++I+ I E  PLTG+     ++I ++
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPAGYSDRAYRIEFFGDEIDRIVEVDPLTGEVHGVRDSISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L  A+  IK E+  ++ + EKEG+LLEA+R++QR TYDLEML   G   
Sbjct: 250 PATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLEMLREVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR +  R  GEPP TL ++ P+DSL+ +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL Q    IVEQ+IRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNQTSR-IVEQVIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EINL  ++  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVAEINLRIERKERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   LIQT+GRAAR
Sbjct: 489 RMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLIQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT S++LAIDET RRR  Q+++N++H I P+++ + + ++I  +  + 
Sbjct: 549 NANGEVIMYADRITDSMKLAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDMISVVKADK 608

Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A  + S  D     L+ K+ K  + +L++QM  AA  L+FE AA +RD I  L+ S
Sbjct: 609 EAEKSDSFADLNFDELTAKQKKQMIANLKEQMQDAAKRLDFESAANLRDAIIELEGS 665


>gi|89098752|ref|ZP_01171633.1| excinuclease ABC subunit B [Bacillus sp. NRRL B-14911]
 gi|89086428|gb|EAR65548.1| excinuclease ABC subunit B [Bacillus sp. NRRL B-14911]
          Length = 659

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 480/655 (73%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI+++++GI S ++ Q LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 5   FELVSKYSPQGDQPEAISRIVEGIRSGKRHQTLLGATGTGKTFTISNVIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y ++++ L+ G  +E+ +LL  LV  QY+R 
Sbjct: 125 SATSSLFERKDVIIIASVSCIYGLGSPEEYKELVLSLRTGMEIERNQLLRRLVDIQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ +   E + I+
Sbjct: 185 DIDFRRGTFRVRGDVVEIFPASRDEHCMRVEFFGDEIDRIREVDALTGEIMGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I++EL+ RL E+ + G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKIAIGNIEKELEERLEEMRENGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ VDESHVTIPQ+ GM+ GD  RK+ L ++
Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDYFPDDFLMVVDESHVTIPQVRGMFNGDQARKSVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL F E+       + VSATPG +E+E     +V+QIIRPTGL+DP +E
Sbjct: 365 GFRLPSAMDNRPLTFPEFEKHINQIVYVSATPGPYEIEHTPE-MVQQIIRPTGLLDPTIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+L+T LTK+M+EDLT+YL E  I+V+Y+HSEVKTLE
Sbjct: 424 VRPIEGQIDDLIGEINDRVKKNERVLITTLTKKMSEDLTDYLKEIGIKVQYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIR+LRLGK+DVL+GINLLREGLDIPE  LV+ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRELRLGKYDVLIGINLLREGLDIPEVSLVSILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD IT S++LAI ET RRRE Q  +N++H I PQ+++++I +VI      +
Sbjct: 544 NASGHVIMYADKITNSMELAISETKRRREIQEAYNEEHGITPQTIQKEIRDVIRATHAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               + +  A+   ++KK+    + ++ K+M  AA  LNFE AA +RD +  LK+
Sbjct: 604 -EQADYAAPAKPAKMTKKERDKLIANMEKEMKEAAKALNFERAAELRDLLLELKA 657


>gi|218234341|ref|YP_002369942.1| excinuclease ABC subunit B [Bacillus cereus B4264]
 gi|218162298|gb|ACK62290.1| excinuclease ABC, B subunit [Bacillus cereus B4264]
          Length = 658

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|227505038|ref|ZP_03935087.1| excision endonuclease subunit B [Corynebacterium striatum ATCC
           6940]
 gi|227198402|gb|EEI78450.1| excision endonuclease subunit B [Corynebacterium striatum ATCC
           6940]
          Length = 697

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/660 (52%), Positives = 472/660 (71%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++++ PSGDQPAAIA+L + +   E+  +L+G TG+GK+ T A +IE  QRP +VMA
Sbjct: 28  FKVESEFQPSGDQPAAIAELDERLSRGERDVVLMGATGTGKSATAAWLIEKQQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH
Sbjct: 88  PNKTLAAQLANELRQLLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VVSSVSCIYG+G+ +SY    V ++ G+ +++   L  LV  QY+R 
Sbjct: 148 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVIIEEGEEIDRDRFLRLLVDIQYERN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+G  RGTFRV GD+++I P++ E+ A R+  FG+D++E+   +PLTG  +  V+ ++I+
Sbjct: 208 DVGFTRGTFRVKGDTVDIIPAY-EERAVRIEFFGDDVDELYYIHPLTGDVLERVDEVRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A++ IK EL  RL +LE  G+LLEAQRL  R  YDLEM+E  G C 
Sbjct: 267 PATHYVAGPERMAKAVEDIKAELAERLADLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM+ GD  RK  L E+
Sbjct: 327 GIENYSRHIDGRPAGSAPATLLDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F+E+      T+ +SATPG++EL   QG  VEQ+IRPTGL+DP V 
Sbjct: 387 GFRLPSATDNRPLTFDEFEERVGQTVYMSATPGNFELTASQGEYVEQVIRPTGLIDPKVT 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ DEI     +  R+L+T LTKRMAEDLT+YL E  ++VRY+HS++ TL+
Sbjct: 447 VKPTKGQIDDLIDEIRQRTAKQERVLVTTLTKRMAEDLTDYLLEHGVKVRYLHSDIDTLQ 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +VI+YAD IT S+Q AI+ET RRR KQ+ +N++H I+PQ +++KI +++D +   D
Sbjct: 567 NVSGEVIMYADKITDSMQEAIEETERRRAKQIAYNEEHGIDPQPLRKKIADILDQVYESD 626

Query: 741 AATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 S  A  +      +++  + +  +  L  QM  AA  L FE A R+RDEI  LK
Sbjct: 627 GEEAAASDPAALMDKPDVSTMAVDEVQKLIDDLTAQMGAAARELKFELAGRLRDEIADLK 686


>gi|257066895|ref|YP_003153151.1| excinuclease ABC, B subunit [Anaerococcus prevotii DSM 20548]
 gi|256798775|gb|ACV29430.1| excinuclease ABC, B subunit [Anaerococcus prevotii DSM 20548]
          Length = 656

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/662 (54%), Positives = 468/662 (70%), Gaps = 10/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P GDQP AI +L KGI + +  Q+L GVTGSGKTFTMA +I+ +QRP +V+A
Sbjct: 3   FNLKSDYKPRGDQPYAIDKLSKGIEAGDHHQILRGVTGSGKTFTMANIIQNVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL++EFK FFP NAVEYFVSYYDYYQPEAYV  TDTYI K+SSIN++ID+MRH
Sbjct: 63  HNKTLAYQLFTEFKEFFPDNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G    Y +++V L+ G  +  ++++  L+  QY R 
Sbjct: 123 SATMALFERRDVIIVASVSCIYGLGDPIEYQKLVVSLRPGQEISPEDVMRKLIDVQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFR  GD +++FP+  +  A R   FG++I+EISEF  LTG+    +    IY
Sbjct: 183 DVEFSRGTFRRRGDILDVFPAGFDQKAIRFEFFGDEIDEISEFDSLTGKVTARISHAYIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T       A+  I+EEL+ RL EL  E +LLEAQRLEQR  YD+EML   G C 
Sbjct: 243 PASHYATSSEKTEKAIITIEEELEERLAELNSENKLLEAQRLEQRTKYDIEMLREIGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y PED +L VDESHV+IPQ+ GMY GD  RK  L +Y
Sbjct: 303 GIENYSRHLSQRPAGSRPYTLIDYFPEDFVLMVDESHVSIPQVGGMYEGDRSRKQNLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+  L    + VSATPG +E E+  G +V+QIIRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLKFDEFEKLINQAVYVSATPGPYEKEKTHGKMVDQIIRPTGLLDPLIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ +E++    +  R+L+T LTK+MAEDLT +L E  I+VRY+HS++KT+E
Sbjct: 423 VRPTANQIDDLIEEVHATIAKKERVLVTTLTKKMAEDLTTFLTENGIKVRYLHSDIKTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLG+FDVLVGINLLREGLDIPE  L+ ILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RSEIIRELRLGEFDVLVGINLLREGLDIPEVSLITILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YADTIT S++ AIDET RRR  Q E N+KH I P ++K+ I E+I       
Sbjct: 543 NSEGRVIMYADTITGSMRRAIDETERRRTIQEEFNEKHGIVPTTIKKNIAEII------- 595

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
              T    + +    SK   +  L +L  +M+ AA+ L+FE AA +RD+IK +K +  F 
Sbjct: 596 -QITKKKEEEEIEEFSKDDIETILINLEAEMYKAAEELDFERAAALRDQIKSMKDN--FT 652

Query: 801 GL 802
           G+
Sbjct: 653 GV 654


>gi|327398718|ref|YP_004339587.1| UvrABC system protein B [Hippea maritima DSM 10411]
 gi|327181347|gb|AEA33528.1| UvrABC system protein B [Hippea maritima DSM 10411]
          Length = 660

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/655 (51%), Positives = 466/655 (71%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++DY P+GDQP  I +L+  + S  K Q+LLGVTGSGKTFT+A VI  + +P +V++
Sbjct: 4   FKLKSDYEPAGDQPKVIKELVNNLKSGVKYQVLLGVTGSGKTFTIANVIAQIDKPVLVIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EF  FFP NAVEYF+SYYDYYQPEAYVPRTDTYI K+SSIN++IDR++ 
Sbjct: 64  HNKTLAAQLYNEFSAFFPENAVEYFISYYDYYQPEAYVPRTDTYIAKDSSINDEIDRLKQ 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
               SLL R D IVV+SVSCIYG G  E YS++   + +GD + +K++LS+ V+  Y R 
Sbjct: 124 KTVMSLLTRRDVIVVASVSCIYGAGEKEDYSKLAFYVNVGDKLSRKDILSNFVELLYVRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD I+I+PS++ ++A R+ +F ++++ I  F PLT + +   E++ ++
Sbjct: 184 DINFERGTFRVRGDVIDIYPSYMRNLAIRIELFDDEVDRIVMFDPLTNRVVEERESVAVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + ++T +     A+K IKEELK R+   +  G+LLEAQR+E+R  +D+EM+E TG+C 
Sbjct: 244 PANFFITTKEKKERAIKSIKEELKERIEYFKSRGKLLEAQRIEERTNFDIEMIEQTGTCA 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ + R PG+PP TL +Y   D L+ +DESHVT+PQ+ GMYRGD+ RK TL +Y
Sbjct: 304 GIENYSRHFSKREPGQPPGTLIDYFGNDFLVIIDESHVTLPQLKGMYRGDYSRKKTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE        I VSATP  +E+    G++VEQIIRPTGL++PPVE
Sbjct: 364 GFRLPSALDNRPLKFEELMERWDQVIFVSATPDEFEVNLSNGVVVEQIIRPTGLMEPPVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++     V+D+Y EI  A Q+G ++L+T LTKRMAEDL+EY  E  ++ +YMHSE+  +E
Sbjct: 424 VKPMDNAVDDLYSEIKAATQKGGKVLITTLTKRMAEDLSEYYNELGLKTKYMHSELNAIE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +II DLR  +FD ++G+NLLREGLDIPE  LVAILDADKEGFLRS TSLIQT GRAAR
Sbjct: 484 RAKIISDLRNDRFDCIIGVNLLREGLDIPEVNLVAILDADKEGFLRSTTSLIQTAGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS-VKEKIMEVIDPILLE 739
           N  SKVI YA+ +T S++ AIDE  RRR+ Q E+NKKH I P++ VK K  +++    L+
Sbjct: 544 NAESKVIFYANKMTDSMKKAIDEIKRRRKIQAEYNKKHGIEPKTIVKSKDNKMLQMCNLD 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              T    ++   + +  K     +K L+K +  A   ++FE A + RDEI++LK
Sbjct: 604 YMDT----LEEFDVGVKPKDIPKRIKQLQKLLKDAVKKMDFESAIKYRDEIEKLK 654


>gi|257875563|ref|ZP_05655216.1| excinuclease ABC [Enterococcus casseliflavus EC20]
 gi|257809729|gb|EEV38549.1| excinuclease ABC [Enterococcus casseliflavus EC20]
          Length = 665

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/657 (52%), Positives = 467/657 (71%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AI QL+ G+   +K Q+LLG TG+GKT+T++ +I+ + +P +++A
Sbjct: 12  FDLVSKYQPAGDQPEAIHQLVDGVVGGKKAQILLGATGTGKTYTISNLIKEVNKPTLIIA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 72  HNKTLAGQLYGEFKDFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCI+G+GS   Y++ +V L++G    + +LL  L++ Q++R 
Sbjct: 132 SATSSLLERNDVIVVASVSCIFGLGSPIEYARQVVSLRVGMEKSRDQLLKELIEIQFERN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A R+  FG++I+ I E   LTG+ + + E + I+
Sbjct: 192 DIDFQRGRFRVRGDVVEIFPASRDERALRIEFFGDEIDRIREVDALTGEIMSDTEHVSIF 251

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL  RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 252 PATHFVTNEDHMEHAIASIQSELDERLKVLRAENKLLEAQRLEQRTNYDIEMMREMGYTS 311

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ +DESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 312 GIENYSRHMDGRKEGEPPYTLLDFFPDDFLIVIDESHVTMPQVRGMYNGDRARKQMLVDY 371

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E +Q   +I +QIIRPTGL+DP +E
Sbjct: 372 GFRLPSALDNRPLRLEEFEKHVNQIVYVSATPGPYEYDQTDTVI-QQIIRPTGLLDPVIE 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+M+EDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 431 VRPIMGQIDDLVGEINERVERNERVFVTTLTKKMSEDLTDYFKELGIKVKYLHSDIKTLE 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 491 RTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD +T S+Q AIDET RRR  Q  +N++H I P+++   I E+ D I +  
Sbjct: 551 NSEGKVIMYADKMTDSMQRAIDETARRRSIQEAYNEEHGIVPKTI---IKEIRDLIAITK 607

Query: 741 AATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A       A     LS+++    L  L K+M  AA  L+FE AA +RD I  LK++
Sbjct: 608 VAEETGEYTATSYEELSREEKATLLLKLEKEMKDAAKALDFETAATLRDTILELKAA 664


>gi|325002615|ref|ZP_08123727.1| excinuclease ABC subunit B [Pseudonocardia sp. P1]
          Length = 742

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/692 (51%), Positives = 472/692 (68%), Gaps = 32/692 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +D  P+GDQP AIA L + + + E+  +L+G TG+GK+ T A +IE  QRP +VMA
Sbjct: 49  FQVVSDLQPAGDQPTAIADLDRRLRAAEQDIVLMGATGTGKSATTAWLIEQQQRPTLVMA 108

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SS+N+ ++R+RH
Sbjct: 109 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSVNDDVERLRH 168

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V L +G+ VE+  LL  LV  QY R 
Sbjct: 169 SATMNLLSRRDVVVVASVSCIYGLGTPQSYLDRSVALAVGEEVERDRLLRLLVDIQYTRN 228

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P++ E++A R+  FG++IE +    PLTG  +  V  I+I+
Sbjct: 229 DMSFTRGTFRVRGDTVEIIPAY-EELALRIEFFGDEIEALYHLNPLTGDTVEQVGEIRIF 287

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+ EL+ RL +LE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 288 PATHYVAGPDRMERAVSDIEAELEQRLEQLENQGKLLEAQRLRMRTQYDIEMIRQVGFCS 347

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 348 GIENYSRHIDGRGAGTAPATLIDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEY 407

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE+      T+ +SATPG +EL +  G  VEQ+IRPTGLVDP V 
Sbjct: 408 GFRLPSAVDNRPLTWEEFADRIGQTVYLSATPGPYELNRTGGEFVEQVIRPTGLVDPEVV 467

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  I+VRY+HSEV TL 
Sbjct: 468 VKPTKGQIDDLVAEIRDRTERDERVLVTTLTKKMAEDLTDYLLELGIKVRYLHSEVDTLR 527

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 528 RVELLRQLRSGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAAR 587

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+Q AIDET RRR KQ+ +N +  I+PQ ++++I +++D +  E 
Sbjct: 588 NVSGQVHMYADRITDSMQYAIDETDRRRAKQVAYNTERGIDPQPLRKRIADILDQVYREA 647

Query: 741 AATTNISIDAQQLSLSKKK------GKAH-----------------------LKSLRKQM 771
             T ++ +     + S+ K      G+A                        ++ +  QM
Sbjct: 648 EDTESVPVGGSGRNASRGKRASGEAGRAPSAGSAGVPAKDTAGMPRAELADLIQQMNDQM 707

Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
             AA +L FE AAR+RDEI  LK     +G+D
Sbjct: 708 LTAARDLQFELAARLRDEIGDLKKE--LRGMD 737


>gi|228961392|ref|ZP_04123006.1| UvrABC system protein B [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228798277|gb|EEM45276.1| UvrABC system protein B [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 658

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDCIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|218248416|ref|YP_002373787.1| excinuclease ABC subunit B [Cyanothece sp. PCC 8801]
 gi|257061482|ref|YP_003139370.1| excinuclease ABC subunit B [Cyanothece sp. PCC 8802]
 gi|218168894|gb|ACK67631.1| excinuclease ABC, B subunit [Cyanothece sp. PCC 8801]
 gi|256591648|gb|ACV02535.1| excinuclease ABC, B subunit [Cyanothece sp. PCC 8802]
          Length = 667

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/669 (53%), Positives = 470/669 (70%), Gaps = 20/669 (2%)

Query: 138 ITF--FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +TF  F++Q  + P GDQP AIAQLL  + +  + Q LLG TG+GKTF++A VIE + +P
Sbjct: 1   MTFSSFRLQAPFEPQGDQPQAIAQLLASLQAGNRFQTLLGATGTGKTFSIASVIEKVGKP 60

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAY+P +DTYIEK SSIN++I
Sbjct: 61  TLVLAHNKTLAAQLCNELRQFFPDNAVEYFISYYDYYQPEAYIPVSDTYIEKSSSINDEI 120

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V L++G  V+Q+ LL  LV  
Sbjct: 121 DMLRHSATRSLFERKDVIVVASISCIYGLGMPSEYLKAAVPLEVGQEVDQRNLLRELVGI 180

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R DI + RG FRV GD +EI P++ ED   RV  FG++IE I    P+TG+ +++++
Sbjct: 181 QYSRNDIELQRGRFRVKGDVLEIVPAY-EDRIIRVEFFGDEIEAIRYLDPVTGEILQSLK 239

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + IY   H+VTP   +  A + IK EL+ ++  LEKEG+LLEAQR+ QR  YDL++L+ 
Sbjct: 240 MVNIYPARHFVTPDEQIEIACQQIKVELEEQIEALEKEGKLLEAQRISQRTRYDLDLLQE 299

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  +ENYSRYL GR  GEPP  L +Y P+D LL VDESHVT+PQ+ GMY GD  RK 
Sbjct: 300 VGYCNGVENYSRYLAGRKAGEPPECLIDYFPQDWLLVVDESHVTVPQLRGMYNGDRSRKQ 359

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L ++GFRLPS  DNRPL+ EE+       I VSATPG WE+EQ    I+EQIIRPTG++
Sbjct: 360 VLIDHGFRLPSAADNRPLKSEEFWTKVNQCIFVSATPGDWEIEQSGDRIIEQIIRPTGVL 419

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP + +R    QV+D+  EI    ++  R+L+T LTKRM+EDLTEYL ER ++V+Y+HSE
Sbjct: 420 DPEIFVRPTEGQVDDLLGEIKQRVKRQERVLITTLTKRMSEDLTEYLSERGVKVQYLHSE 479

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           VK++ERIEI++ LR G+FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTI
Sbjct: 480 VKSIERIEILQSLRKGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTI 539

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAAR+VN + ILYAD +TKS+  AI+ET RRR  Q+ HNK +NI P+ + +K    I  
Sbjct: 540 GRAARHVNGQAILYADNLTKSMIKAIEETERRRGIQMAHNKINNITPKPIIKKETNSILS 599

Query: 736 ILLEDAATTNIS--IDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
            L       +IS  +++QQL         L  +K    ++ L  QM  AA  L FEEAA+
Sbjct: 600 FL-------DISRRLNSQQLEEIYEKSDDLPLEKVPELIQQLENQMKEAAQKLEFEEAAK 652

Query: 786 IRDEIKRLK 794
            RD IK L+
Sbjct: 653 YRDRIKNLR 661


>gi|325125372|gb|ADY84702.1| UvrB [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 680

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/657 (52%), Positives = 468/657 (71%), Gaps = 2/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQ  AI QL  G  + +K Q+L G TG+GKT+TMA VI  M +P +V+ 
Sbjct: 10  FELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAKMNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +L+ RND IVV+SVSCIYG+G    Y   ++ +  G   E+  LL  LV  QY R 
Sbjct: 130 AATSALMSRNDAIVVASVSCIYGLGDPREYEASVLNVYTGQEYERNTLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + RG FRV GD +E+FPS   D A+R+  FG++I+ I E  PLTG+     ++I ++
Sbjct: 190 DIDLQRGRFRVRGDVVEVFPSGYSDRAYRIEFFGDEIDRIVEVDPLTGEVHGGRDSISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L  A+  IK E+  ++ + EKEG+LLEA+R++QR TYDLEML   G   
Sbjct: 250 PATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLEMLREVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR +  R  GEPP TL ++ P+DSL+ +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL +    IVEQ+IRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNRTSR-IVEQVIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EINL  ++  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVAEINLRIERKERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   LIQT+GRAAR
Sbjct: 489 RMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLIQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT S+++AIDET RRR  Q+++N++H I P+++ + + ++I  +  + 
Sbjct: 549 NANGEVIMYADRITDSMKMAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDIISVVKADK 608

Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A  + S  D     L+ K+ K  + +L++QM  AA  L+FE AA +RD I  L+ S
Sbjct: 609 EAEKSDSFADLNFDELTAKQKKQMIANLKEQMQDAAKRLDFESAANLRDAIIELEGS 665


>gi|262202763|ref|YP_003273971.1| excinuclease ABC subunit B [Gordonia bronchialis DSM 43247]
 gi|262086110|gb|ACY22078.1| excinuclease ABC, B subunit [Gordonia bronchialis DSM 43247]
          Length = 718

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/689 (51%), Positives = 475/689 (68%), Gaps = 29/689 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI  L + I   EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 28  FEVVSEYEPAGDQPEAIDDLERRIRGGEKDIVLLGATGTGKSATTAWLIERVQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 88  PNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ +SY    V++++G ++++  LL  LV  QY R 
Sbjct: 148 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVEVEVGANIDRDALLRLLVDVQYTRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD++EI PS+ E++A R+  FG+++E +   +PLTG  +R V++++I+
Sbjct: 208 DQSFTRGGFRVRGDTVEIIPSY-EELAVRIEFFGDEVEALYYLHPLTGDVVRQVDSLRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  AM  I+ EL+ RL +LE +G+LLEAQRL  R TYDLEM+   G C 
Sbjct: 267 PATHYVAGPERMERAMTSIEAELEERLADLEGKGKLLEAQRLRMRTTYDLEMMRQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y P+D LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 327 GIENYSRHIDGRAAGSAPATLIDYFPDDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEY 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL ++E+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSAVDNRPLTWDEFVDRIGQTVYLSATPGPYELGQANGEFVEQVIRPTGLVDPQVV 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 447 VKPTKGQIDDLVHEIRERTERDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSEVDTLR 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 507 RVELLRQLRSGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739
           NV+ +V +YADTIT S++ AI+ET RRREKQ+ +N +H I+P+ +++KI +++D +  E 
Sbjct: 567 NVSGEVHMYADTITDSMRNAIEETERRREKQVAYNTEHGIDPKPLRKKIADILDQVYREA 626

Query: 740 DAATTNISIDAQQLSLSK-------KKGKAH------------------LKSLRKQMHLA 774
           D  T  +    +  S  +       K G A                   +  L  QM  A
Sbjct: 627 DDDTVKVGGSGRNASRGRRAQGEVSKAGSAGVIEKRDVSSMPRAELADLVAQLTDQMMNA 686

Query: 775 ADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           A +L FE A R+RDEI  LK     +G+D
Sbjct: 687 ARDLQFELAGRLRDEIADLKKE--LRGMD 713


>gi|256379520|ref|YP_003103180.1| excinuclease ABC subunit B [Actinosynnema mirum DSM 43827]
 gi|255923823|gb|ACU39334.1| excinuclease ABC, B subunit [Actinosynnema mirum DSM 43827]
          Length = 723

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/709 (49%), Positives = 489/709 (68%), Gaps = 32/709 (4%)

Query: 124 TPHRSWSINNHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGS 179
           TP ++ S +    DI      F++ +++ PSGDQPAAIA+L + +   E+  +LLG TG+
Sbjct: 13  TPVKAHSAHRPVSDIPRSAGEFRVVSEFTPSGDQPAAIAELERRLRGGERDVVLLGATGT 72

Query: 180 GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239
           GK+ T A ++E +QRP +VMAPNK LAAQL +E ++ FP NAVEYFVSYYDYYQPEAY+P
Sbjct: 73  GKSATTAWLVEKVQRPTLVMAPNKTLAAQLANELRDLFPENAVEYFVSYYDYYQPEAYIP 132

Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
           ++DTYIEK+SS+NE ++R+RHSAT SLL R D IVV+SVSCIYG+G+ ++Y    + L++
Sbjct: 133 QSDTYIEKDSSVNEDVERLRHSATMSLLTRRDVIVVASVSCIYGLGTPQAYLDRSIPLRV 192

Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359
           G  V++  LL +LV  QY R DI   RGTFRV GD++EI PS+ E++A RV  FG++++ 
Sbjct: 193 GGEVDRDVLLRALVDVQYARNDIAFNRGTFRVRGDTVEIIPSY-EELAIRVEFFGDEVDR 251

Query: 360 ISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419
           +   +PLTG  ++ V+ ++I+  +HY      +  A+K I+ EL+ RL +LE++G+LLEA
Sbjct: 252 LYYLHPLTGDVVKEVQELRIFPATHYAAGPERMEIAIKGIEVELEQRLADLERQGKLLEA 311

Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT 479
           QRL  R TYD+EM+   G C  IENYSR++ GR+ G  P TL +Y P+D LL +DESHVT
Sbjct: 312 QRLRMRTTYDIEMMRQVGFCSGIENYSRHIDGRDAGSAPATLIDYFPDDFLLVIDESHVT 371

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           +PQI  MY GD  RK  L ++GFRLPS +DNRPL +EE+      TI +SATPG++EL Q
Sbjct: 372 VPQIGAMYEGDASRKRNLVDHGFRLPSALDNRPLTWEEFADRVGQTIYLSATPGNYELGQ 431

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
             G  VEQ+IRPTGLVDP V ++    Q++D+  EI   A++  R+L+T LTK+M+EDLT
Sbjct: 432 AGGEFVEQVIRPTGLVDPQVVVKPTEGQIDDLVHEIRARAERDERVLVTTLTKKMSEDLT 491

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           +YL E  IRVRY+HS++ TL R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDA
Sbjct: 492 DYLLELGIRVRYLHSDIDTLRRVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDA 551

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
           DKEGFLRS TSLIQTIGRAARNV+ +V +YAD +T S++ AI+ET RRR KQ+ +N++  
Sbjct: 552 DKEGFLRSTTSLIQTIGRAARNVSGEVHMYADRVTDSMRNAIEETNRRRAKQVAYNEERG 611

Query: 720 INPQSVKEKIMEVIDPILLE-------------------------DAATTNISIDAQQLS 754
           I+PQ +++KI ++++ +  E                          A ++ +       S
Sbjct: 612 IDPQPLRKKITDILEQVYAEVEDDVAPGGSGRNATRGKRAAGEPGKAGSSGVLAGRDVGS 671

Query: 755 LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           +++ +    ++ L  QM  AA  L FE A R+RDEI  LK     +G+D
Sbjct: 672 MARAELADLVQQLTDQMMNAARELQFELAGRLRDEIADLKKE--LRGMD 718


>gi|15672544|ref|NP_266718.1| excinuclease ABC subunit B [Lactococcus lactis subsp. lactis
           Il1403]
 gi|13878836|sp|Q9CI06|UVRB_LACLA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|12723449|gb|AAK04660.1|AE006290_5 excinuclease ABC subunit B [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406063|gb|ADZ63134.1| excinuclease ABC subunit B [Lactococcus lactis subsp. lactis CV56]
          Length = 692

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/684 (51%), Positives = 475/684 (69%), Gaps = 33/684 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQ  AIA+L+  I + EK Q+L G TG+GKT+TM++VI    +P +VMA
Sbjct: 11  FELVSKYEPAGDQGEAIAELVDNIENGEKAQILRGATGTGKTYTMSQVIARTGKPTLVMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 71  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCIYG+GS + Y   +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 131 SATSSLLERNDVIVVASVSCIYGLGSPKEYQDSVVSLRPGQEISRDQLLNDLVGIQFERN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 191 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRIREIEVLTGQVLGEVDHLAIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  ++  I+ EL+ +L     EG+LLEAQRLEQR  YD+EML   G C 
Sbjct: 251 PATHFMTNDDRMEESIAKIEAELEEQLKVFRSEGKLLEAQRLEQRTNYDIEMLREMGYCN 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR  GEPP TL ++ P+D ++ +DESH+T+ Q+ GMY GD  RK  L  Y
Sbjct: 311 GVENYSRHMDGREEGEPPYTLLDFFPDDFMIMIDESHMTMGQVKGMYNGDRARKEMLCNY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +E+EQ    IVEQIIRPTGL+DP VE
Sbjct: 371 GFRLPSALDNRPLKREEFESHVHQIVYVSATPGDYEMEQTD-TIVEQIIRPTGLLDPVVE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+  A++  R+ +T LTK+M+EDLT Y  E  I+V+YMHS++KTLE
Sbjct: 430 VRPMMGQIDDLVGEIHKRAEKNERVFVTTLTKKMSEDLTAYFKEMGIKVKYMHSDIKTLE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 490 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 549

Query: 681 NVNSKVILYADT-----------------------------ITKSIQLAIDETTRRREKQ 711
           N    VILY+D                              IT+S++ A+DET RRRE Q
Sbjct: 550 NSEGHVILYSDMAKALDENDPVDKEILDSGYYTEYEGQKYKITRSMKHAMDETARRREIQ 609

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771
           + +N++H I PQ++K++I ++I      D+      +DA   +++KK+ KA +K L K+M
Sbjct: 610 MAYNEEHGITPQTIKKEIRDLIAITKKTDSGEIE-EVDAS--AMTKKERKALVKKLEKEM 666

Query: 772 HLAADNLNFEEAARIRDEIKRLKS 795
             AA  L+FE AA++RD +  L++
Sbjct: 667 QQAASALDFEGAAQLRDMVLELRA 690


>gi|116074361|ref|ZP_01471623.1| excinuclease ABC subunit B [Synechococcus sp. RS9916]
 gi|116069666|gb|EAU75418.1| excinuclease ABC subunit B [Synechococcus sp. RS9916]
          Length = 678

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/678 (52%), Positives = 464/678 (68%), Gaps = 20/678 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   Y P GDQP AIAQL++G++  ++ Q LLG TG+GKTFTMA VI    RPA+V+A
Sbjct: 4   FDLSAPYTPKGDQPTAIAQLVEGVNGGQRYQTLLGATGTGKTFTMANVIAKTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFPHNAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPHNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G+S++ +  L  LV  QY R 
Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKASVKFQVGESLDLRGSLRDLVNNQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I RG FRV GD +EI P++ ED   R+ +FG+++E I    P TG+ ++++E I IY
Sbjct: 184 DTDITRGRFRVRGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSMEAINIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L+TA+K I+ ELK RL  L  EG+LLEAQRLEQR TYDLEML   G C 
Sbjct: 243 PAKHFVTPKERLDTAIKDIRSELKERLDFLNTEGKLLEAQRLEQRTTYDLEMLGQVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L GR PG  P  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L ++
Sbjct: 303 GVENYARHLAGREPGTAPECLIDYFPDDWLLIVDESHVTCSQLQAMYNGDQARKKVLIDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ +E+      T+ VSATPG+WE+E   G + EQ+IRPTG++DP VE
Sbjct: 363 GFRLPSAADNRPLKGDEFWTKARQTVFVSATPGNWEMEVSSGQVAEQVIRPTGVLDPVVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI   A++  R+L+T LTKRMAEDLT+YL E  +RVRY+HSE+ ++E
Sbjct: 423 VRPTTGQVDDLLGEIRSRAKKQQRVLVTTLTKRMAEDLTDYLAENEVRVRYLHSEIHSIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733
           +V    +LYAD +T S+  AI+ET RRR+ Q  +N KH I P +  +K    I       
Sbjct: 543 HVEGVALLYADNMTDSMAKAIEETERRRKIQQTYNDKHGIVPTAAGKKASNSILSFLELS 602

Query: 734 ----------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
                     D + +   A   I  D++ ++L        +  L  +M  AA  L+FEEA
Sbjct: 603 RKLKTEGPDADLVQVAGQAVKAIEDDSEGMALDAL--PELIDQLEVRMKEAAKKLDFEEA 660

Query: 784 ARIRDEIKRLKSSPYFQG 801
           A +RD IK+L+     +G
Sbjct: 661 ANLRDRIKQLRQKLVGKG 678


>gi|296505583|ref|YP_003667283.1| excinuclease ABC subunit B [Bacillus thuringiensis BMB171]
 gi|296326635|gb|ADH09563.1| excinuclease ABC subunit B [Bacillus thuringiensis BMB171]
          Length = 658

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|228923891|ref|ZP_04087168.1| UvrABC system protein B [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835690|gb|EEM81054.1| UvrABC system protein B [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 658

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/655 (54%), Positives = 478/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+  L EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEEHLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|229112572|ref|ZP_04242109.1| UvrABC system protein B [Bacillus cereus Rock1-15]
 gi|229147691|ref|ZP_04276034.1| UvrABC system protein B [Bacillus cereus BDRD-ST24]
 gi|228635704|gb|EEK92191.1| UvrABC system protein B [Bacillus cereus BDRD-ST24]
 gi|228670952|gb|EEL26259.1| UvrABC system protein B [Bacillus cereus Rock1-15]
          Length = 658

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|145595652|ref|YP_001159949.1| excinuclease ABC subunit B [Salinispora tropica CNB-440]
 gi|145304989|gb|ABP55571.1| Excinuclease ABC subunit B [Salinispora tropica CNB-440]
          Length = 701

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/688 (52%), Positives = 471/688 (68%), Gaps = 28/688 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +D+ P+GDQPAAI  L + +   ++  +LLG TG+GK+ T A +IE +QRP +V+A
Sbjct: 12  FQVVSDFQPAGDQPAAIDDLERRVRRGDRHTVLLGATGTGKSATTAWLIERLQRPTLVLA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK L AQL  EF    P+NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SSINE+++R+RH
Sbjct: 72  PNKTLCAQLAKEFSELLPNNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSINEEVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV++VS IYG+G+ E Y    V++  G  +++ +LL  LV  QY R 
Sbjct: 132 SATMSLLTRRDVVVVATVSAIYGLGTPEEYLDRAVRVVTGQELDRDQLLRRLVDIQYARN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P++ E++A R+ +FG+++E +    PLTG  +R V+ + I+
Sbjct: 192 DMAFQRGTFRVRGDTLEIIPAY-EELAVRIELFGDEVERLYYLNPLTGDVVREVDHLLIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY      +  A++ I+ EL  RL ELE+ G LLEAQRL  R TYD+EM+   G C 
Sbjct: 251 PATHYAAGPERMERAIRDIEAELGERLAELEQRGSLLEAQRLRMRTTYDIEMMRQVGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR PG PP  L +Y P+D L  VDESHVTIPQI GMY GD  RK  L ++
Sbjct: 311 GIENYSMHIDGRLPGSPPHCLLDYFPDDFLTVVDESHVTIPQIGGMYEGDASRKRMLIDH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRF+E+       + +SATPGSWELE  QG  VEQ+IRPTGLVDP V 
Sbjct: 371 GFRLPSAADNRPLRFDEFLERVGQMVFLSATPGSWELEHAQGEYVEQVIRPTGLVDPEVV 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI L  ++  R+L+T LTK+MAEDL++YL E  IRVRY+HSEV TL 
Sbjct: 431 VKPTKGQIDDLMHEIKLRTERDERVLVTTLTKKMAEDLSDYLLENGIRVRYLHSEVDTLR 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 491 RVELLRELRKGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGRSLIQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+  A+ ET RRR KQ+ HN+ H I+P+ +++KI +++D I  E 
Sbjct: 551 NVSGQVHMYADKITPSMAEAVGETNRRRAKQIAHNEAHGISPEPLRKKIHDILDDIYREA 610

Query: 741 AAT-TNISIDAQQLSLSK------------------KKGKAH------LKSLRKQMHLAA 775
             T T +    +QLS  K                  ++G A       ++ L  QM  AA
Sbjct: 611 EETDTRVGGAVRQLSRGKAPVKETRSSRSRAAAGPAREGMARAELAELIQELNGQMLAAA 670

Query: 776 DNLNFEEAARIRDEIKRLKSSPYFQGLD 803
             L FE AARIRDEI  LK     +G+D
Sbjct: 671 RELQFELAARIRDEISELKKE--LRGMD 696


>gi|315604240|ref|ZP_07879306.1| excision endonuclease subunit UvrB [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313946|gb|EFU61997.1| excision endonuclease subunit UvrB [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 696

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/676 (52%), Positives = 474/676 (70%), Gaps = 24/676 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI +L   I   E+  +L+G TG+GK+ T A +IE +QRPA+++ 
Sbjct: 13  FEVISPYTPSGDQPKAIRELAARIRDGEQDVVLMGATGTGKSATTAWLIEELQRPALILE 72

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH
Sbjct: 73  PNKTLAAQLAAEFRALLPSNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 132

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ E Y   +++L  G  V++  LL   V  QY R 
Sbjct: 133 SATNSLLTRRDTVVVSSVSCIYGLGTPEEYVARMIELSRGMVVDRDALLRRFVAMQYVRN 192

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+IEI P + E++A R+ MFG++I+ ++  +PLTG  I  VE   ++
Sbjct: 193 DMAFTRGTFRVRGDTIEIIPVY-EELAIRIEMFGDEIDSLAVLHPLTGDVISEVEHTYLF 251

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I++EL+ RL  L  + +L+E QRL  R T+DLEML+  GSC 
Sbjct: 252 PASHYVAGEERMKKAIASIEDELEERLAWLHAQNKLVEEQRLRMRTTFDLEMLKEIGSCS 311

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI  M+ GD  RK TL +Y
Sbjct: 312 GVENYSRHIDGRGPGTPPHTLLDYFPEDFLLIIDESHVTVPQIGAMFEGDMSRKRTLVDY 371

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+++E+      T+ +SATPG +EL++  G+ VEQIIRPTGLVDP V 
Sbjct: 372 GFRLPSAMDNRPLKWDEFTARIGQTVYLSATPGPYELDRSDGV-VEQIIRPTGLVDPLVV 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ +++ L  ++  R+L+T LTK+MAE+LT YL ER ++V Y+HS+V TL 
Sbjct: 431 VKPTQGQIDDLLEQVRLRVERDERVLVTTLTKKMAEELTTYLAERGVKVEYLHSDVDTLR 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LRLG FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 491 RVELLRELRLGTFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736
           NV+ +V +YAD IT S++ AI ET RRRE Q+ +N++H I+PQ +++KI +V D +    
Sbjct: 551 NVSGEVHMYADNITDSMREAISETMRRREIQIAYNEEHGIDPQPLRKKISDVTDMLAREQ 610

Query: 737 -----LLEDAATTNISIDAQQLSLSKKKGKAH-------------LKSLRKQMHLAADNL 778
                LLE       S   +  S +   G AH             ++ L  QM  AA++L
Sbjct: 611 VDTQTLLEGGYRKEKSAKERGESRAVGAGGAHSLGARAESELADLIEELSAQMMTAAEHL 670

Query: 779 NFEEAARIRDEIKRLK 794
            FE AAR+RDEI+ LK
Sbjct: 671 QFEVAARLRDEIEDLK 686


>gi|297161422|gb|ADI11134.1| excinuclease ABC subunit B [Streptomyces bingchenggensis BCW-1]
          Length = 718

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/708 (50%), Positives = 480/708 (67%), Gaps = 49/708 (6%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++   + +  F++ + Y PSGDQP AIA L + I + E   +LLG TG+GK+ T A +IE
Sbjct: 4   VSQIERKVAPFEVVSPYQPSGDQPTAIADLGRRIRAGESDVVLLGATGTGKSATTAWMIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 64  KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V LK+G  +++ +LL 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGQEIDRDQLLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ 
Sbjct: 184 RFVDIQYARNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I + E + ++  +HYV     +  A+  I+ EL+  L  LEK+G+LLEAQRL  R TYD+
Sbjct: 243 ITDDEELYVFPATHYVAGPERMERAIAGIESELEQTLARLEKQGKLLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   G+C  IENYS ++ GR PG PP TL +Y P+D LL +DESHVT+PQI  MY GD
Sbjct: 303 EMMRQIGTCSGIENYSLHIDGREPGSPPHTLLDYFPDDFLLVIDESHVTVPQIGAMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL E+GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G  VEQIIR
Sbjct: 363 ASRKRTLIEHGFRLPSALDNRPLKWEEFLERTGQTVYLSATPGPYELSRGDG-FVEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y+ E  I+VR
Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLIHEIRTRTEKDERVLVTTLTKKMAEDLTDYMLELGIQVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS
Sbjct: 482 YLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+  NK + I+PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQVAFNKANGIDPQPLRKKIG 601

Query: 731 EVIDPILLEDAATTNI------SIDAQQLSLSKKKGKAHLKSLRKQ-------------- 770
           +++  I  E+  T  +        D +    +K + KA + +L  Q              
Sbjct: 602 DIVATIAREEIDTKELLGTGYRKTDGKG---AKGQAKAPVPALAGQRAGSAGKGAKGAKG 658

Query: 771 ------------------------MHLAADNLNFEEAARIRDEIKRLK 794
                                   M  AA  L FE AAR+RDE+  LK
Sbjct: 659 AKDGQLTDRPAAELAELIEEMTDRMRAAAAELQFEIAARLRDEVGELK 706


>gi|326790740|ref|YP_004308561.1| excinuclease ABC subunit B [Clostridium lentocellum DSM 5427]
 gi|326541504|gb|ADZ83363.1| excinuclease ABC, B subunit [Clostridium lentocellum DSM 5427]
          Length = 660

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/656 (52%), Positives = 475/656 (72%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L+  I+   K Q LLGVTGSGKTFTMA +IE +Q+P +++A
Sbjct: 4   FEIVSEFKPTGDQPQAITELVTSINEGHKYQTLLGVTGSGKTFTMANIIEKVQKPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+NE+ID++RH
Sbjct: 64  HNKTLAAQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IV++SVSCIYG+G    YS+ ++ ++ G  +++ ++L  L++ QY R 
Sbjct: 124 SATAALCEREDVIVIASVSCIYGLGDPIDYSEQVLSIRTGMEMDRDDVLRKLIQIQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  +R +FRV GD++EI P+ + + A R+  FG++I+ I+E  PLTG      E + I+
Sbjct: 184 DMDFVRASFRVRGDTVEIIPAGMSEKAIRIEFFGDEIDRIAEIDPLTGSVFGYREHVVIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S Y      +  A++ I++EL+ RL E ++E +LLEAQRL QR  +D+EML   G C 
Sbjct: 244 PASFYAISSEKMEVALQRIEKELEERLKEFKEEDKLLEAQRLSQRTQFDMEMLREMGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L+GR  GE P TL +Y P+D L+ +DESH+TIPQ+  MY GD  RK  L +Y
Sbjct: 304 GVENYSRHLSGREEGETPFTLLDYFPKDFLMIIDESHMTIPQVRAMYNGDRARKTVLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       + VSATP  +ELE     I EQ+IRPTGL+DP +E
Sbjct: 364 GFRLPSALDNRPLKFDEFESKINQLLFVSATPAQYELEHSLA-IAEQLIRPTGLLDPVIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +G ++++T LTKRMAEDLT Y+ E  ++++Y+HS++ TLE
Sbjct: 423 LRPVKGQIDDLLGEINQIVAKGEKVMITTLTKRMAEDLTTYMGELGVKIKYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+  FDVLVGINLLREGLDIPE  L+AILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RIEIIRDLRMDVFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +TKS++ AI ET RRR+ Q E+N+ H I P+++K+KI ++I      D
Sbjct: 543 NANGRVIMYADQVTKSMKNAISETARRRQIQEEYNEAHGIVPETIKKKIRDLIIATKTAD 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                ++ +    S+SK++ +  +K + K M  AA  L FE+AA +RD + +LK +
Sbjct: 603 KEKGLLA-EKDPESMSKEELEKTMKKVEKDMKKAATELQFEKAAELRDVLIKLKQT 657


>gi|229153321|ref|ZP_04281499.1| UvrABC system protein B [Bacillus cereus m1550]
 gi|228629925|gb|EEK86576.1| UvrABC system protein B [Bacillus cereus m1550]
          Length = 658

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADCITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|281491028|ref|YP_003353008.1| excinuclease ABC subunit B [Lactococcus lactis subsp. lactis KF147]
 gi|281374786|gb|ADA64306.1| Excinuclease ABC, subunit B [Lactococcus lactis subsp. lactis
           KF147]
          Length = 692

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/684 (51%), Positives = 475/684 (69%), Gaps = 33/684 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQ  AIA+L+  I + EK Q+L G TG+GKT+TM++VI    +P +VMA
Sbjct: 11  FELVSKYEPAGDQGEAIAELVDNIENGEKAQILRGATGTGKTYTMSQVIARTGKPTLVMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 71  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCIYG+GS + Y   +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 131 SATSSLLERNDVIVVASVSCIYGLGSPKEYQDSVVSLRPGQEISRDQLLNDLVGIQFERN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 191 DIDFQRGCFRVRGDIVEVFPASRDEHAFRVEFFGDEIDRIREIEVLTGQVLGEVDHLAIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  ++  I+ EL+ +L     EG+LLEAQRLEQR  YD+EML   G C 
Sbjct: 251 PATHFMTNDDRMEESIAKIEAELEEQLKVFRSEGKLLEAQRLEQRTNYDIEMLREMGYCN 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR  GEPP TL ++ P+D ++ +DESH+T+ Q+ GMY GD  RK  L  Y
Sbjct: 311 GVENYSRHMDGREEGEPPYTLLDFFPDDFMIMIDESHMTMGQVKGMYNGDRARKEMLCNY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +E+EQ    IVEQIIRPTGL+DP VE
Sbjct: 371 GFRLPSALDNRPLKREEFESHVHQIVYVSATPGDYEMEQTD-TIVEQIIRPTGLLDPVVE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+  A++  R+ +T LTK+M+EDLT Y  E  I+V+YMHS++KTLE
Sbjct: 430 VRPMMGQIDDLVGEIHKRAEKNERVFVTTLTKKMSEDLTAYFKEMGIKVKYMHSDIKTLE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 490 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 549

Query: 681 NVNSKVILYADT-----------------------------ITKSIQLAIDETTRRREKQ 711
           N    VILY+D                              IT+S++ A+DET RRRE Q
Sbjct: 550 NSEGHVILYSDMAKALDENDPADKEILDSGYYTEYEGQKYKITRSMKHAMDETARRREIQ 609

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771
           + +N++H I PQ++K++I ++I      D+      +DA   +++KK+ KA +K L K+M
Sbjct: 610 MAYNEEHGITPQTIKKEIRDLIAITKKTDSGEIE-EVDAS--AMTKKERKALVKKLEKEM 666

Query: 772 HLAADNLNFEEAARIRDEIKRLKS 795
             AA  L+FE AA++RD +  L++
Sbjct: 667 QQAASALDFEGAAQLRDMVLELRA 690


>gi|113952727|ref|YP_729312.1| excinuclease ABC subunit B [Synechococcus sp. CC9311]
 gi|123132795|sp|Q0IE10|UVRB_SYNS3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|113880078|gb|ABI45036.1| excinuclease ABC, B subunit [Synechococcus sp. CC9311]
          Length = 679

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/672 (53%), Positives = 462/672 (68%), Gaps = 22/672 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++   Y P GDQP AI++L++G++  E+ Q LLG TG+GKTFTMA VI    RPA+V+A
Sbjct: 4   YELSAPYTPKGDQPTAISKLVEGVNGGERYQTLLGATGTGKTFTMANVIAQTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFPHNAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPHNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V  K+G+++  +  L  LV  QY R 
Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVPFKVGETLNLRGSLRDLVNNQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD +EI P++ +D   RV +FG+++E I    P TG+ +++++ I IY
Sbjct: 184 DTEAGRGRFRVKGDVLEIGPAY-DDRLVRVELFGDEVEAIRYVDPTTGEILQSLDAISIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  LN A+K I+ ELK RL  L  EG+LLEAQRLEQR TYDLEML+  G C 
Sbjct: 243 PAKHFVTPKERLNDAVKAIRSELKERLEFLNGEGKLLEAQRLEQRATYDLEMLQQIGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L GR PG  P  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L ++
Sbjct: 303 GVENYARHLAGREPGSAPECLIDYFPDDWLLIVDESHVTCSQLLAMYNGDQARKKVLIDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+      T+ VSATPG+WE+E  +G + EQ+IRPTG++DP VE
Sbjct: 363 GFRLPSAADNRPLKSEEFWSKAKQTVFVSATPGNWEMEVSEGQVAEQVIRPTGVLDPLVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI   A +  R+L+T LTKRMAEDLT+YL E  +RVRY+HSE+ ++E
Sbjct: 423 VRPTTGQVDDLLGEIRDRASKKQRVLVTTLTKRMAEDLTDYLAENKVRVRYLHSEIHSIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAQRSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V  K +LYA+T+T S+  AI+ET RRR+ Q  +N+KH I P +  +K    I   L   
Sbjct: 543 HVEGKALLYAETMTDSMAKAIEETERRRKIQHTYNEKHGITPTAAGKKASNSILSFL--- 599

Query: 741 AATTNISIDAQQLSLSKKKGKA--------------HLKSLRKQMHL----AADNLNFEE 782
             +  +  D     L K  GKA               L  L  Q+ L    +A  L+FEE
Sbjct: 600 ELSRKLKADGPDADLVKVAGKAVQALEEDVDGLALDALPELIDQLELKMKESAKKLDFEE 659

Query: 783 AARIRDEIKRLK 794
           AA +RD IK+L+
Sbjct: 660 AANLRDRIKKLR 671


>gi|282882169|ref|ZP_06290808.1| excinuclease ABC, B subunit [Peptoniphilus lacrimalis 315-B]
 gi|281297934|gb|EFA90391.1| excinuclease ABC, B subunit [Peptoniphilus lacrimalis 315-B]
          Length = 671

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/654 (54%), Positives = 468/654 (71%), Gaps = 6/654 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D   F++ +DY P+GDQP AI +L++G++   K Q LLGVTGSGKTFTMA VIE +QRPA
Sbjct: 8   DTVKFKIHSDYKPTGDQPQAIDKLVEGLNKGYKHQTLLGVTGSGKTFTMANVIERVQRPA 67

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LA QL SE K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N++ID
Sbjct: 68  LVIAHNKTLAYQLCSELKEFFPENAVEYFVSYYDYYQPEAYVPMTDTFIEKDSSVNDEID 127

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++RHSAT SL ER D I+V+SVSCIYG+G    Y  + + L+ G   ++ E++S LV  Q
Sbjct: 128 KLRHSATMSLFERRDVIIVASVSCIYGLGDPIDYENLAISLRPGMIRDRNEIMSKLVDIQ 187

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV GD +EIFP+   + + RV  FG++I+ ISE   LTG+ +R +  
Sbjct: 188 YVRNDFDFSRGTFRVRGDVLEIFPASSSEKSIRVEFFGDEIDRISEVDALTGKVLRLLTH 247

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             I   SHY T +  +  A+  I+EEL+ RL  L+ + +LLEAQRLEQR  YDLEMLE  
Sbjct: 248 AYITPASHYATTKTKVEKAIVTIEEELEERLKVLKDQDKLLEAQRLEQRTRYDLEMLEEM 307

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSR+L+ R  G  P TL +Y P+D +  +DESH +IPQI GM+ GD  RK T
Sbjct: 308 GYCNGIENYSRHLSQRPAGSRPYTLIDYFPDDFITIIDESHQSIPQIRGMFNGDRSRKET 367

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPLRF E+  +    I VSATPG +E E  +    EQIIRPTGL+D
Sbjct: 368 LVEYGFRLPSALDNRPLRFFEFESMMKQCIYVSATPGPYEREHEEN-SAEQIIRPTGLLD 426

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P + +R  + Q++D+  EIN   ++  R+L+T LTKRMAEDLT++  E  I+  YMHS+V
Sbjct: 427 PQIFVRPVKNQIDDLVSEINKTVEKKERVLVTTLTKRMAEDLTKHFKEIGIKATYMHSDV 486

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           +TLER++II+DLR  K DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT G
Sbjct: 487 ETLERMQIIKDLRQAKIDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSRTSLIQTAG 546

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNV+ KVI+YAD IT+S++  IDET RRR+ Q  +NK+H I P+S+ + I +V++  
Sbjct: 547 RAARNVSGKVIMYADNITESMKETIDETNRRRKIQDAYNKEHGIVPKSIIKDIRDVLNTT 606

Query: 737 LLEDAATTNISIDAQQL--SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           L+   A +++S   +      +K + +A + +L+ QM+ AA+ L+FE+AA IRD
Sbjct: 607 LV---AESDVSFKEEDFEDEFTKDEIQAMIDALKPQMYEAAEALDFEKAAEIRD 657


>gi|254384208|ref|ZP_04999552.1| UvrABC system protein B [Streptomyces sp. Mg1]
 gi|194343097|gb|EDX24063.1| UvrABC system protein B [Streptomyces sp. Mg1]
          Length = 711

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/704 (51%), Positives = 478/704 (67%), Gaps = 48/704 (6%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++   + +  F++ + Y PSGDQPAAIA+L K I + EK  +LLG TG+GK+ T A +IE
Sbjct: 4   VSKIERTVAPFEVVSPYQPSGDQPAAIAELEKRIRAGEKDVVLLGATGTGKSATTAWMIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 64  KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +V LK+G+ +++ +LL 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVSLKVGEEIDRDQLLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ 
Sbjct: 184 RFVDIQYTRNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I     + ++  SHYV     +  A+  I+ EL  RL ELEK+G++LEAQRL  R TYDL
Sbjct: 243 ISEDRELYVFPASHYVAGPERMEKAVAGIEAELTERLAELEKQGKMLEAQRLRMRTTYDL 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   GSC  IENYS ++  R  G  P TL +Y PED LL +DESHVT+PQI  MY GD
Sbjct: 303 EMMRQIGSCSGIENYSLHMDDRERGSAPNTLIDYFPEDFLLVIDESHVTVPQIGAMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G  VEQIIR
Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFQGRIGQTVYLSATPGKYELSRGDG-FVEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+VR
Sbjct: 422 PTGLIDPEVVVKPTEGQIDDLVHEIRARVEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS
Sbjct: 482 YLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD +T +++ AI+ET RRREKQ+ +N  + I+PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADKMTPAMEKAIEETNRRREKQVAYNTANGIDPQPLRKKIN 601

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGK----------------------------- 761
           +++  I  E+  T  +      L    ++GK                             
Sbjct: 602 DIVATIAREEVDTEEL------LGTGYRQGKEAKAPVPALGGRAAQAKGGKGAKGAKAAE 655

Query: 762 -------AHLKSLRKQ----MHLAADNLNFEEAARIRDEIKRLK 794
                    L SL +Q    M  AA  L FE AARIRDE+  LK
Sbjct: 656 ALTDRPAQELASLIEQMTERMRGAAAELQFEVAARIRDEVGELK 699


>gi|317052706|ref|YP_004113822.1| excinuclease ABC subunit B [Desulfurispirillum indicum S5]
 gi|316947790|gb|ADU67266.1| excinuclease ABC, B subunit [Desulfurispirillum indicum S5]
          Length = 660

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 473/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+G QP AI ++ + I    K Q+LLGVTGSGKT+TMAK++EA+Q+P +V+A
Sbjct: 3   FRVVSPYSPAGSQPQAIEKITRHITEGTKHQVLLGVTGSGKTYTMAKIVEAVQKPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++IDR+RH
Sbjct: 63  HNKTLAAQLYQEFKEFFPDNAVEYFVSYYDYYQPEAYIPTTDTFIEKDSSINDKIDRLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++V+SVSCIYG+GS E Y  M++ + +   V+ +EL   LV+ QY R 
Sbjct: 123 SATRSILERRDVLIVASVSCIYGLGSAEFYLDMVIPVDVDSEVDMEELAGELVRVQYTRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFR  GD IEIFPS+  D A R+  FG+ +E I E  PLTG+K R++E ++IY
Sbjct: 183 DTDFRRGTFRRRGDIIEIFPSYEIDSAIRIEFFGDTVEAIWEIDPLTGEKRRSIEKLRIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHYV  +  +  A+  IK +LK RL     E +LLEAQR+EQR  +D+EMLE  G CQ
Sbjct: 243 PNSHYVADKSIIERAIGSIKADLKKRLDYFRSENKLLEAQRIEQRTNFDIEMLEEFGFCQ 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+ GR+ GEPP TL  Y+P+D+L+F+DESHVTIPQ+ GMY GD  RK TL +Y
Sbjct: 303 GIENYSRYVDGRSEGEPPHTLLSYMPDDALIFIDESHVTIPQVRGMYNGDRSRKMTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL FEE+N + P  + VSATP  +E E     I E IIRPTGL+DP +E
Sbjct: 363 GFRLPAALDNRPLNFEEFNSILPQAVYVSATPAEYEKELSGHTITELIIRPTGLLDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  QV+++  E+     +G + L+T LT R++E+L++YL +  I+V+Y+HS++ T+E
Sbjct: 423 VRPSTGQVDNLVFELKKVIAEGGKALVTTLTIRLSENLSDYLIQLGIKVKYLHSKIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG +DV+VGINLLREGLDIPE  LVAILDADKEGFLRS+ SL+QT GRAAR
Sbjct: 483 RSEIIRDLRLGVYDVVVGINLLREGLDIPEVQLVAILDADKEGFLRSERSLMQTAGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  +VI+Y D +T+S+Q  ID T +RR  Q  +N++H I PQ + + I + + P L E+
Sbjct: 543 NLKGRVIMYGDKVTQSMQSVIDTTAKRRAIQQAYNEEHGITPQGISKAIGKDLIPELAEE 602

Query: 741 -AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   +D  QL+  + + K  +  L+ +M   A+ L+FE AA +RDEI RL+
Sbjct: 603 RQERLQGKVDIGQLADYQIREK--IVELQAKMQRHAEELDFESAASVRDEIFRLQ 655


>gi|228968260|ref|ZP_04129258.1| UvrABC system protein B [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228791433|gb|EEM39037.1| UvrABC system protein B [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 658

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|313123323|ref|YP_004033582.1| excinuclease ABC subunit b [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279886|gb|ADQ60605.1| excinuclease ABC subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 680

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/657 (52%), Positives = 467/657 (71%), Gaps = 2/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQ  AI QL  G  + +K Q+L G TG+GKT+TMA VI  M +P +V+ 
Sbjct: 10  FELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAKMNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +L+ RND IVV+SVSCIYG+G    Y+  ++ +  G   E+  LL  LV  QY R 
Sbjct: 130 AATSALMSRNDVIVVASVSCIYGLGDPREYAASVLNVYTGQEYERNTLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+   D A+R+  FG++I+ I E  PLTG+     ++I ++
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPAGYSDRAYRIEFFGDEIDRIVEVDPLTGEVHGVRDSISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L  A+  IK E+  ++ + EKEG+LLEA+R++QR TYDLEML   G   
Sbjct: 250 PATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLEMLREVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR +  R  GEPP TL ++ P+DSL+ +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL Q    IVEQ+IRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNQTSR-IVEQVIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EINL  ++  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVAEINLRIERKERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   LIQT+GRAAR
Sbjct: 489 RMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLIQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT S++LAIDET RRR  Q+++N++H I P+++ + + ++I  +  + 
Sbjct: 549 NANGEVIMYADRITDSMKLAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDMISVVKADK 608

Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A  + S  D     L+ K+ K  + +L +QM  AA  L+FE AA +RD I  L+ S
Sbjct: 609 EAEKSDSFADLNFDELTAKQKKQMIANLNEQMQDAAKRLDFESAANLRDAIIELEGS 665


>gi|323697700|ref|ZP_08109612.1| excinuclease ABC, B subunit [Desulfovibrio sp. ND132]
 gi|323457632|gb|EGB13497.1| excinuclease ABC, B subunit [Desulfovibrio desulfuricans ND132]
          Length = 667

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/662 (51%), Positives = 467/662 (70%), Gaps = 13/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y   GDQP A+A+L+ G+ +  + Q+LLG TG+GKTFTMA V+  + RPA+V+A
Sbjct: 4   FELVSEYTLKGDQPQAVAELVAGLGAGVRDQVLLGATGTGKTFTMANVVATLNRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+EF+  FPHNAVEYFVSYYDYYQPEAY+P +D YIEK+SSIN+ ID++RH
Sbjct: 64  PNKTLAAQLYTEFRGLFPHNAVEYFVSYYDYYQPEAYLPHSDVYIEKDSSINDDIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R D ++V+SVSCIYG+GS + Y++M++ ++ G ++  + LL  LV+  Y+R 
Sbjct: 124 AATHALLTRKDVLIVASVSCIYGLGSPDFYAKMVIPVEEGQTMAMESLLGRLVEIHYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD +EI P++  + A R+  FG++I+ ISE  PLTG+    +    IY
Sbjct: 184 DYDFHRGTFRVRGDVVEIIPAYSREKALRIEFFGDEIDSISETDPLTGEVKDRLRKTVIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+V+ R  L+ AM  I++EL+ RL  L++  +L+EAQRLEQR  YDLE +E  G C 
Sbjct: 244 PGSHFVSDRDNLDRAMHDIRDELQSRLAYLKRGNKLVEAQRLEQRTQYDLETIEELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  G+PP TL +Y P+D +LFVDESH+ +PQ+ GMYRGD  RK TL ++
Sbjct: 304 GIENYSRHLDGRVEGQPPATLLDYFPDDFILFVDESHIALPQVGGMYRGDRSRKTTLVDF 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE+       + VSATPG  EL+  QG++VEQIIRPTGL+DP +E
Sbjct: 364 GFRLPSALDNRPLNYEEFQERIHQAVYVSATPGPLELDLAQGVVVEQIIRPTGLLDPQIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  E      +  R+L+T LTKRMAEDL +YL +  ++ RY+HS++ TLE
Sbjct: 424 VRKTQGQIDDLLAECKKRQSRDERVLVTTLTKRMAEDLNDYLNQMGVQSRYLHSDIDTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ II+ LR G+F VLVGINLLREGLDIPE  LVAILD DKEGFLRS  SL+QT GRAAR
Sbjct: 484 RMAIIQALREGEFFVLVGINLLREGLDIPEVSLVAILDGDKEGFLRSTRSLVQTFGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           N + +VILYAD +T S+  A+ ET RRREKQ  +N++H I P ++++K+  +   +    
Sbjct: 544 NADGRVILYADKVTDSMAEAMGETERRREKQEAYNREHGITPTTIRKKVDNLFGDLGGHG 603

Query: 738 -----LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                +  AA   +   A Q +L+K      +K L ++M  AA  L FE AA +RD I R
Sbjct: 604 DHGGTVAPAAEDGVDYGADQKTLNKT-----VKRLEREMREAAKELEFERAAELRDRIAR 658

Query: 793 LK 794
           ++
Sbjct: 659 IR 660


>gi|229181421|ref|ZP_04308749.1| UvrABC system protein B [Bacillus cereus 172560W]
 gi|228601996|gb|EEK59489.1| UvrABC system protein B [Bacillus cereus 172560W]
          Length = 658

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|229193407|ref|ZP_04320355.1| UvrABC system protein B [Bacillus cereus ATCC 10876]
 gi|228590062|gb|EEK47933.1| UvrABC system protein B [Bacillus cereus ATCC 10876]
          Length = 658

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ETETYEAAPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|213962077|ref|ZP_03390342.1| excinuclease ABC, B subunit [Capnocytophaga sputigena Capno]
 gi|213955430|gb|EEB66747.1| excinuclease ABC, B subunit [Capnocytophaga sputigena Capno]
          Length = 665

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/665 (52%), Positives = 468/665 (70%), Gaps = 17/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ P+GDQP AI QL+KGI   +K Q+LLGVTGSGKTFT+A V+E +QRP +V+A
Sbjct: 3   FNIVSDFAPTGDQPQAIDQLVKGIERDDKYQVLLGVTGSGKTFTIANVVERIQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P T TYIEK+ SIN++I+++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYIPTTGTYIEKDLSINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T +LL  R D +VV+SVSC+YGIG+   + + ++ +K GD + + +L+  LV+  Y R
Sbjct: 123 STTSALLSGRRDVLVVASVSCLYGIGNPVEFQKNVITIKQGDILPRTKLMHRLVQSLYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                  G FR+ GD +++FP + +D A+R+  FG++IEEI +F P T Q +   E++ I
Sbjct: 183 TTAEFRHGNFRIKGDVLDVFPGY-DDNAFRIHFFGDEIEEIEQFDPTTNQVLDRYESLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+++L  ++   E  G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDILQKAIWNIQQDLMKQVEFFEASGKALEAKRLKERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ +DESHVT+ Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLIDYFPDDFLMVIDESHVTVSQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL+Q QG+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQQTQGVYVEQVIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  RIL+T LTKRMAE+LT+YL    IR RY+HS+V TL
Sbjct: 422 EVRPSANQIDDLVEEIQLRTEKDERILVTTLTKRMAEELTKYLTRIGIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RNVN K I+YAD IT S+Q  ID+T  RREKQ+ +NK HNI PQ + +KI   +      
Sbjct: 542 RNVNGKAIMYADKITDSMQRTIDDTNYRREKQMNYNKAHNITPQPLHKKIENSLSKSPIT 601

Query: 734 ----DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
               DP   E  A      +AQ + LS K+ +  +K  RK M  AA  L+F +AA+ RDE
Sbjct: 602 EFHYDPSFKERTAA-----EAQSVYLSAKELEKKIKETRKLMETAAKELDFVKAAQYRDE 656

Query: 790 IKRLK 794
           +KRL+
Sbjct: 657 LKRLQ 661


>gi|148657804|ref|YP_001278009.1| excinuclease ABC subunit B [Roseiflexus sp. RS-1]
 gi|148569914|gb|ABQ92059.1| excinuclease ABC, B subunit [Roseiflexus sp. RS-1]
          Length = 670

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/658 (52%), Positives = 468/658 (71%), Gaps = 4/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P+GDQP AIAQL+ GI +  K Q LLG TG+GKT TMA V   ++RPA+VMA
Sbjct: 3   FRIEAPFQPAGDQPKAIAQLVAGIRAGYKHQTLLGATGTGKTLTMAHVFSQLERPALVMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L +QLY+EF+   P  AVE F+SYYD Y PEAYVP  D YIEKE+ INE+IDR+RH
Sbjct: 63  HNKTLVSQLYAEFRELLPDAAVEMFISYYDIYTPEAYVPSKDLYIEKEAEINEEIDRLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++L  R D ++V+SVS IYG+GS   Y Q+++ +++G+   + +LL  L+  Q++R 
Sbjct: 123 AATQALFTRRDVLIVASVSAIYGLGSPHEYGQVVIPIRVGEVRNRDKLLRQLLDLQFERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+++IFP++ +++A RV  +G+++E I+EF PLTG+ + N   + IY
Sbjct: 183 DVDFHRGTFRVRGDTLDIFPAN-QEIALRVEFWGDEVERITEFDPLTGEVLLNRTAVDIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T   TL  A+  I+ EL+ R+ ELE++G+ LEA RL+QR  YDLEML   G C 
Sbjct: 242 PAKHFITTAETLKLAIADIQAELEARVAELEQQGKFLEAARLKQRTNYDLEMLSEVGYCS 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R  G+ P TL +Y P+D +LFVDESH+T+PQI GMY GD  RK TL EY
Sbjct: 302 GIENYSRHLDRRAAGQTPWTLLDYFPDDFILFVDESHITLPQIRGMYAGDRSRKETLVEY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+       I VSATPG +E E     IVEQIIRPTGL+DP VE
Sbjct: 362 GFRLPSALDNRPLRFDEFERHIHQAIYVSATPGPYEYEHS-AQIVEQIIRPTGLLDPIVE 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+  EI    Q+G R L+T LTKRMAEDL +YL E  IR  Y+HS+++TLE
Sbjct: 421 VRPTRGQIDDLVGEIKRRVQKGQRALVTTLTKRMAEDLADYLKEMGIRTSYLHSDIETLE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS +SLIQ IGRAAR
Sbjct: 481 RVEILRDLRLGVYDVVVGINLLREGLDLPEVSLVAILDADKEGYLRSGSSLIQIIGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738
           ++   VI+YADTIT+S++ AIDET RRR  Q  +N++HNI P  + + + ++ D +  + 
Sbjct: 541 HIEGTVIMYADTITQSMRTAIDETNRRRAIQEAYNREHNITPVGISKAVRDLTDRVRKVA 600

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           E+     ++    +L + K +    +K L KQM  AA +L FE+AA +RD+I  L+ +
Sbjct: 601 EERGVYQVAEAPAELPIPKDEIVKLIKELEKQMKQAAKDLAFEKAAALRDQIVELRRT 658


>gi|313901314|ref|ZP_07834801.1| excinuclease ABC, B subunit [Clostridium sp. HGF2]
 gi|312953922|gb|EFR35603.1| excinuclease ABC, B subunit [Clostridium sp. HGF2]
          Length = 658

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/657 (53%), Positives = 459/657 (69%), Gaps = 3/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + +DY P GDQP AI +L+ GI   +K Q+LLG TG+GKTFT++ VI  + +P +V 
Sbjct: 5   LFDLVSDYQPQGDQPKAIQELVDGIQKGKKQQVLLGATGTGKTFTISNVIAKVNKPTLVF 64

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP+N VEYFVS +DYYQPEAY+P +DTYI+K ++ N ++D +R
Sbjct: 65  AHNKTLAGQLYSEFKEFFPNNRVEYFVSNFDYYQPEAYIPSSDTYIDKNATTNMELDMLR 124

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +A  S+LER D I+++SV+CIYG  + E Y +M   +++GD +++KEL+  LV +QY R
Sbjct: 125 MAAVNSILERRDTIIIASVACIYGASNPEQYREMFFSIRVGDIIDRKELMGKLVARQYTR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ ++RGTFRV GD IE+ P H +    R+ MF ++IE I E  PLTG+ +       +
Sbjct: 185 NDMDLLRGTFRVRGDVIEVAPGHTDSFILRIEMFDDEIERICEVDPLTGKVLNAYTVYVV 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  S Y T +  +N A   I+EEL  RL  LE EG+LLE QRLEQR  YD+E L   G C
Sbjct: 245 YPASGYATKQEIINRAANTIEEELADRLQVLENEGKLLEKQRLEQRARYDIEALREFGVC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR++ GR PGE P TLF+Y P+D LL VDESHV++PQI GMY GD  RK TL  
Sbjct: 305 PGIENYSRHIDGRKPGERPYTLFDYFPDDFLLVVDESHVSLPQIRGMYNGDRARKETLVN 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP+RFEE+  +    I VSATPG++ELEQ +G I+EQIIRPTGL+DP V
Sbjct: 365 YGFRLPSALDNRPMRFEEFEKMINQAIFVSATPGNYELEQTKGEIIEQIIRPTGLLDPVV 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R  + Q++D+ DEI    ++  R L+T LT RMAEDLT YL   + +V ++H EVKT+
Sbjct: 425 TVRPTQGQIDDLVDEIRTRIEKNERTLITTLTVRMAEDLTSYLKGMDFKVAWLHHEVKTI 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIRDLR GK+DVL+GINLLREGLDIPE  L+ ILDADKEGFLRS+ SLIQ IGRAA
Sbjct: 485 ERTEIIRDLRKGKYDVLIGINLLREGLDIPEVSLITILDADKEGFLRSERSLIQIIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN + +VI+YAD IT S+Q A+DET RRRE Q+ +N+KH I P+++ + I EV+     +
Sbjct: 545 RNAHGQVIMYADKITDSMQKALDETARRREIQIAYNEKHGITPKTIIKPIHEVVRSKETQ 604

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +     I   A+     K+K    L +L K+M  AA  L+FE AA +RD +  L++S
Sbjct: 605 EMTAKYIGKKAKVSKKDKEK---LLANLEKEMREAAKVLDFERAAELRDILLELRNS 658


>gi|306835986|ref|ZP_07468978.1| excision endonuclease subunit UvrB [Corynebacterium accolens ATCC
           49726]
 gi|304568152|gb|EFM43725.1| excision endonuclease subunit UvrB [Corynebacterium accolens ATCC
           49726]
          Length = 697

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/660 (53%), Positives = 474/660 (71%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P+GDQPAAI +L + ++  E+  +L+G TG+GK+ T A +IE  QRP +VMA
Sbjct: 28  FQVVSDYEPAGDQPAAIEELNERLNRDERDVVLMGATGTGKSATAAWLIEKQQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH
Sbjct: 88  PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT  LL R D +VVSSVSCIYG+G+ +SY    V + + + +++   L  LV  QY+R 
Sbjct: 148 SATSGLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVIIAVDEELDRDRFLRLLVDIQYERN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+G  RGTFRV GD+++I P++ E+ A R+  FG+DI+ +   +P+TG  I  V+ ++I+
Sbjct: 208 DVGFTRGTFRVKGDTVDIIPAY-EERAVRIEFFGDDIDSLYYIHPVTGDVIEQVDEVRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  IKEEL  RL +LE  G+LLEAQRL  R  YDLEM+E  G C 
Sbjct: 267 PATHYVAGPERMEKAVADIKEELAERLEDLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GMY GD  RK  L E+
Sbjct: 327 GIENYSRHVDGRPAGSAPATLLDYFPEDFLTIIDESHVTVPQIGGMYEGDMSRKRNLVEF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+      T+ +SATPG +E+    G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSAVDNRPLTFDEFEERVGQTVYMSATPGDFEMTSSGGEFVEQVIRPTGLVDPKVT 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ DE+        R+L+T LTKRMAEDLT+YL E+ I+VRY+HS++ TL+
Sbjct: 447 VKPTKGQIDDLIDEVRGRIAVKERVLVTTLTKRMAEDLTDYLLEQGIKVRYLHSDIDTLQ 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 507 RVELLRQLRQGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           NV+ +VI+YAD IT S+Q AIDET RRREKQ+ +NK+H ++PQ +++KI +++D +    
Sbjct: 567 NVSGEVIMYADKITDSMQEAIDETERRREKQIAYNKEHGVDPQPLRKKIADILDQVYENN 626

Query: 738 LEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            E+AA ++ S   ++    S++  + +A +  L+ QM  AA  L FE A R+RDEI  LK
Sbjct: 627 GEEAAESDPSAVVEKRDVSSMATDEVEALINDLQAQMGAAARELKFELAGRLRDEIADLK 686


>gi|289750178|ref|ZP_06509556.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis T92]
 gi|289690765|gb|EFD58194.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis T92]
          Length = 758

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/690 (52%), Positives = 479/690 (69%), Gaps = 30/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 67  FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 126

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 127 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 186

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 187 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 246

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 247 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 305

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 306 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 365

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 366 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 425

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 426 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 485

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 486 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 545

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 546 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 605

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D +  E 
Sbjct: 606 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 665

Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773
             T  + +     + S+ +      G+A                      +K L  QM  
Sbjct: 666 DDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMA 725

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE AAR RDEI  LK     +G+D
Sbjct: 726 AARDLQFELAARFRDEIADLKRE--LRGMD 753


>gi|228930166|ref|ZP_04093175.1| UvrABC system protein B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228829451|gb|EEM75079.1| UvrABC system protein B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 658

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|229551769|ref|ZP_04440494.1| excision endonuclease subunit UvrB [Lactobacillus rhamnosus LMS2-1]
 gi|258507918|ref|YP_003170669.1| excinuclease ABC subunit B [Lactobacillus rhamnosus GG]
 gi|258539167|ref|YP_003173666.1| excinuclease ABC subunit B [Lactobacillus rhamnosus Lc 705]
 gi|229314900|gb|EEN80873.1| excision endonuclease subunit UvrB [Lactobacillus rhamnosus LMS2-1]
 gi|257147845|emb|CAR86818.1| Excinuclease ABC, subunit B [Lactobacillus rhamnosus GG]
 gi|257150843|emb|CAR89815.1| Excinuclease ABC, subunit B [Lactobacillus rhamnosus Lc 705]
 gi|259649245|dbj|BAI41407.1| excinuclease ABC subunit B [Lactobacillus rhamnosus GG]
          Length = 671

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/661 (52%), Positives = 463/661 (70%), Gaps = 8/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AIA+L KG    +K Q+LLG TG+GKTFTM+ +I  + +P ++++
Sbjct: 10  FDLVSPYKPAGDQPQAIAKLTKGFEEGKKAQILLGATGTGKTFTMSNIIANLNKPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVS I+G+G    Y   ++ L+ G ++++  LL  LV  Q+ R 
Sbjct: 130 SATSALLERNDVIVVASVSSIFGLGDPHEYKNHVLSLRTGMTIDRNTLLRQLVDIQFDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  +D A RV  FG++I+ I+E   LTG+ I   + + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDDHAIRVEFFGDEIDRITEVDALTGEVIGTRDHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I  EL+ RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFMTSDEQMERAIKSISAELEDRLKVLRGENKLLEAQRLEQRTNYDIEMMREMGFTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGEPP TL ++ P+D  + VDESHVT+PQ+ GMY GD  RK  L  Y
Sbjct: 310 GIENYSRHMDGRKPGEPPYTLLDFFPKDFTIMVDESHVTMPQVKGMYNGDRARKQMLINY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+ +E+       + VSATPG +EL +  +  I EQIIRPTGL+DP +
Sbjct: 370 GFRLPSALDNRPLKIDEFEKHVKRILYVSATPGPYELSRVPKEDIAEQIIRPTGLLDPKI 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EIN       R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTL
Sbjct: 430 EVRPVMGQIDDLVGEINKRIDAHERVFITTLTKKMAEDLTDYLKDMGIKVRYLHSDIKTL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +IIRDLRLGKFDVL+GINLLREG+D+PE  L+AILDADKEGFLR++ SLIQTIGRA+
Sbjct: 490 ERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRAERSLIQTIGRAS 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN + KVI+YAD +T S++ AIDET RRR  Q + N++H+I P+++ + I   I      
Sbjct: 550 RNEHGKVIMYADKVTDSMKAAIDETRRRRAIQEKFNEEHHIQPKTIIKPIRAAISTYEQS 609

Query: 740 -----DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                DA  T   +D + +S + K  K  + +LR QM  AA  L+FE+AA +RD I  L+
Sbjct: 610 DDEKADAKKTFAEVDYEDMSKADK--KELVANLRSQMQAAAKKLDFEQAASLRDTILELQ 667

Query: 795 S 795
           +
Sbjct: 668 A 668


>gi|326773410|ref|ZP_08232693.1| excinuclease ABC subunit B [Actinomyces viscosus C505]
 gi|326636640|gb|EGE37543.1| excinuclease ABC subunit B [Actinomyces viscosus C505]
          Length = 698

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/677 (52%), Positives = 481/677 (71%), Gaps = 25/677 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AIA+L + + + EK  +LLG TG+GK+ T A ++E +QRP +++ 
Sbjct: 14  FEVISPYSPSGDQPTAIAELTERLRAGEKDIVLLGATGTGKSATTAWLVEQVQRPTLILE 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ+ +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH
Sbjct: 74  PNKTLAAQMAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ + Y   +  L++G  +++ +LL   V  QY R 
Sbjct: 134 SATNSLLTRRDVVVVSSVSCIYGLGTPQEYVDRMTPLEVGQQIDRDDLLRRFVSMQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++IE ++  +P+TG  I  VE + ++
Sbjct: 194 DIDFTRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIEALATLHPVTGDVIDTVEQVFVF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A++ I+ EL  RL +LE +GRLLEAQRL  R TYDLEML+  G C 
Sbjct: 253 PASHYVAGPERMQKAIEGIEAELAERLAQLEHDGRLLEAQRLRMRTTYDLEMLQQIGMCS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR  G PP TL +Y PED LL +DESHVT+PQI  M+ GD  RK TL E+
Sbjct: 313 GIENYSLHIDGRETGTPPNTLLDYFPEDFLLVIDESHVTVPQIGAMHEGDASRKRTLVEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+      T+ +SATPG +E ++  G+ VEQIIRPTGLVDP V 
Sbjct: 373 GFRLPSALDNRPLTFAEFEDRIGQTVYLSATPGDYETQRSDGV-VEQIIRPTGLVDPKVV 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ +E+    ++  RIL+T LTKRMAEDLT YL ER +RV Y+HS+V TL 
Sbjct: 432 VKPTQGQIDDLLEEVRARVERQERILVTTLTKRMAEDLTTYLAERGVRVEYLHSDVDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LRLG+FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SL+QTIGRAAR
Sbjct: 492 RVELLRELRLGRFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLVQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YADTIT ++  AI+ET RRR KQL +N +H I+PQ +++KI +V D +  ED
Sbjct: 552 NVSGEVHMYADTITPAMAEAIEETERRRTKQLAYNAEHGIDPQPLRKKIADVTDMLARED 611

Query: 741 AATTNI-----------SIDAQQLSLS------KKKGKAH------LKSLRKQMHLAADN 777
             T ++           S+ A++   +      K  G A       +  L +QMH AA++
Sbjct: 612 VDTADLLAGGYRGHEDSSVRARRKHAAEATVREKLAGAAQGDLAELINELTQQMHAAAED 671

Query: 778 LNFEEAARIRDEIKRLK 794
           L+FE AAR+RDEI+ LK
Sbjct: 672 LHFELAARLRDEIQDLK 688


>gi|229105768|ref|ZP_04236397.1| UvrABC system protein B [Bacillus cereus Rock3-28]
 gi|229118657|ref|ZP_04248009.1| UvrABC system protein B [Bacillus cereus Rock1-3]
 gi|228664849|gb|EEL20339.1| UvrABC system protein B [Bacillus cereus Rock1-3]
 gi|228677657|gb|EEL31905.1| UvrABC system protein B [Bacillus cereus Rock3-28]
          Length = 658

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/655 (53%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++G++S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGLNSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKIEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|226314863|ref|YP_002774759.1| excinuclease ABC subunit B [Brevibacillus brevis NBRC 100599]
 gi|226097813|dbj|BAH46255.1| excinuclease ABC subunit B [Brevibacillus brevis NBRC 100599]
          Length = 658

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/656 (53%), Positives = 471/656 (71%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ PSGDQP AIA+L+ G+ + ++ Q LLG TG+GKT+T A+VI  + RP +VMA
Sbjct: 4   FELVSEFQPSGDQPTAIAELVAGLQAGKRHQTLLGATGTGKTYTAAQVIAQVNRPTLVMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EFK FFP+NAVEYFVSYYDYYQPEAY+P++DT+IEK+SSIN++ID++RH
Sbjct: 64  HNKTLAAQLCAEFKEFFPNNAVEYFVSYYDYYQPEAYIPQSDTFIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y ++++ L++G    + E+L  LV  QY R 
Sbjct: 124 SATSALFERRDVIIVASVSCIYGLGSPEEYRELLLSLRVGMETGRDEILHRLVDIQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+   + A RV  FG++IE I+    LTG+ +   + I I+
Sbjct: 184 DINFTRGTFRVRGDVVEIFPASESEQAIRVEFFGDEIERITSIDVLTGEILGQRDHIAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    +  A++ I+ EL+ RL E    G+LLEAQRLEQR  YD+EM+   G C 
Sbjct: 244 PKSHYVTREEKMKLAVQSIEAELEERLKEFRDAGKLLEAQRLEQRTRYDIEMMMEMGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG   G  P TL +Y PED ++ +DESH+T+PQ+ GMY GD  RK  L E+
Sbjct: 304 GIENYSRHLTGLPAGHAPYTLLDYFPEDFIVMMDESHMTLPQVRGMYNGDRARKDVLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+       I +SATPG +ELE     +V+Q+IRPTGL+DP + 
Sbjct: 364 GFRLPSARDNRPLKFEEFEAKLKQAIYISATPGLYELEHSPE-MVQQVIRPTGLIDPTIT 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI     +  R+L+T LTK+M+EDLT+YL E  I+VRY+HS++KT+E
Sbjct: 423 VRPIKGQIDDLIGEIQATIAKNERVLVTTLTKKMSEDLTDYLKEIGIKVRYLHSDIKTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RMQILRSLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N   +VI+YAD +T S+  AI ET RRR  Q+ +N++H I PQ+VK+ + +VI+   + E
Sbjct: 543 NAEGRVIMYADKMTDSMASAIRETERRRSIQMAYNEEHGITPQTVKKSVRDVIEATKVAE 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + A      D ++  + KK   A ++ + ++M  AA NL FE AA +RD I  LK+
Sbjct: 603 EKADYLPHADFKK--MPKKDRVAVIERMEEEMKEAARNLMFERAAELRDLILELKA 656


>gi|296327642|ref|ZP_06870185.1| excision endonuclease subunit UvrB [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296155232|gb|EFG96006.1| excision endonuclease subunit UvrB [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 669

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/659 (52%), Positives = 478/659 (72%), Gaps = 16/659 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +DY P+GDQP AI  ++K I +  K Q+LLGVTGSGKTFT+A VIE +QRP+++
Sbjct: 10  NLFKIHSDYKPTGDQPTAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPSLI 69

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID++
Sbjct: 70  IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 129

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     + +KEL+  L+  +Y 
Sbjct: 130 RNAATAALIHRRDVIIVASVSSIYGLGSPDTYRRMTIPIDKQTGISRKELMKRLIALRYD 189

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377
           R D+   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQK++ N+E I
Sbjct: 190 RNDVAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLERI 248

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + Y+T     +  ++ IK++LK+ + + E + +LLEAQRL QR  YDLEM+   G
Sbjct: 249 VIYPATQYLTADDDKDRIIQEIKDDLKVEVKKFEDDKKLLEAQRLRQRTEYDLEMITEIG 308

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSRYL+G+ PGE P TLFEY P+D LLF+DESH+T+PQ+ GMY GD  RK +L
Sbjct: 309 YCKGIENYSRYLSGKKPGETPDTLFEYFPKDFLLFIDESHITVPQVRGMYNGDRARKESL 368

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E GFRL + +DNRPLRFEE+      T+ +SATPG +E+E     I EQ+IRPTG+VDP
Sbjct: 369 VENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNHIAEQLIRPTGIVDP 428

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR  + QV+D+ DEI     +  R+L+T LTK++AE+LTEY  E  ++V+YMHS++ 
Sbjct: 429 EIEIRPTKNQVDDLLDEIRKRVAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 488

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTIGR
Sbjct: 489 TLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 548

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  H+I+P+S+ ++I        
Sbjct: 549 AARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYHHIDPKSIVKEIA------- 601

Query: 738 LEDAATTNISIDAQQLSLSKK--KGKAHLK----SLRKQMHLAADNLNFEEAARIRDEI 790
            ED    +  I+ ++   +KK  + KA ++     L K++    + L+FE+A  +RDE+
Sbjct: 602 -EDLINLDYGIEEKKFENNKKVFRNKADIEKEITKLEKKIKKLVEELDFEQAIVLRDEM 659


>gi|291527384|emb|CBK92970.1| excinuclease ABC, B subunit [Eubacterium rectale M104/1]
          Length = 660

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/656 (53%), Positives = 466/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL+KG     + + LLGVTGSGKTFTMA VI A+ +P ++++
Sbjct: 3   FKLHSKYKPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIAALNKPTLIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP++DTYI K+SS+N++ID++R 
Sbjct: 63  HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQSDTYIAKDSSVNDEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IVV+SVSCIYG+GS + ++ M + L+ G   ++ +L  SL+  QY R 
Sbjct: 123 SATAALTERKDVIVVASVSCIYGLGSPDEWTGMSISLRPGQERDRDDLARSLIDLQYTRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD ++IFP++ +D A RV  FG++I+ I E   LTG+   ++E   I+
Sbjct: 183 DMDFHRGTFRVHGDVLDIFPANADDTAIRVEFFGDEIDRIVEVDVLTGEVKCSLEHTMIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  +  +N A   I++EL  R+   + E +L+EAQR+ +R  +D+EM+  TG C 
Sbjct: 243 PASHYVVSQEKINEACLNIEKELDERVKYFKGEDKLIEAQRIAERTNFDIEMMRETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L    PGEPP TL ++ P+D L+ VDESH+TIPQI GMY GD  RK TL +Y
Sbjct: 303 GIENYTRHLNFAKPGEPPMTLIDFFPDDFLIIVDESHITIPQIGGMYAGDRSRKTTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATP  +E E  + +  EQIIRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLNFEEFEGKIDQMLFVSATPNKYENEH-ELLRAEQIIRPTGLLDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N       ++L+T LTKRMAEDLT Y+ E  IRV+Y+HS++ TLE
Sbjct: 422 VRPVEGQIDDLVSEVNKETANHHKVLITTLTKRMAEDLTNYMAELGIRVKYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S+++AIDET RRR+ Q E+N+ H I PQ++++ + ++I  I  + 
Sbjct: 542 NSEGHVIMYADKITDSMRVAIDETKRRRKVQEEYNEAHGITPQTIQKSVRDLI-AISKKV 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           AA  N ++D    S+SKK+ + H+  + K+M  AA  LNFE AA  RD++  LK++
Sbjct: 601 AADEN-ALDKDPESMSKKELEKHIADIEKKMKKAAAELNFEAAAEYRDKLIMLKNT 655


>gi|325684482|gb|EGD26646.1| excision endonuclease subunit UvrB [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 680

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/657 (52%), Positives = 468/657 (71%), Gaps = 2/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQ  AI QL  G  + +K Q+L G TG+GKT+TMA VI  M +P +V+ 
Sbjct: 10  FELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAKMNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +L+ RND IVV+SVSCIYG+G    Y+  ++ +  G   E+  L+  LV  QY R 
Sbjct: 130 AATSALMSRNDVIVVASVSCIYGLGDPREYAASVLNVYTGQEYERNTLIRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+   D A+R+  FG++I+ I E  PLTG+     ++I ++
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPAGYSDRAYRIEFFGDEIDRIVEVDPLTGEVHGVRDSISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L  A+  IK E+  ++ + EKEG+LLEA+R++QR TYDLEML   G   
Sbjct: 250 PATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLEMLREVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR +  R  GEPP TL ++ P+DSL+ +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL Q    IVEQ+IRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNQTSR-IVEQVIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EINL  ++  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVAEINLRIERKERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   LIQT+GRAAR
Sbjct: 489 RMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLIQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT S++LAIDET RRR  Q+++N++H I P+++ + + ++I  +  + 
Sbjct: 549 NANGEVIMYADRITDSMKLAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDMISVVKADK 608

Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A  + S  D     L+ K+ K  + +L++QM  AA  L+FE AA +RD I  L+ S
Sbjct: 609 EAEKSDSFADLNFDELTAKQKKQMIANLKEQMQDAAKRLDFESAANLRDAIIELEGS 665


>gi|325068718|ref|ZP_08127391.1| excinuclease ABC subunit B [Actinomyces oris K20]
          Length = 698

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/677 (52%), Positives = 481/677 (71%), Gaps = 25/677 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AIA+L + + + EK  +LLG TG+GK+ T A ++E +QRP +++ 
Sbjct: 14  FEVISPYSPSGDQPTAIAELTERLRAGEKDIVLLGATGTGKSATTAWLVEQVQRPTLILE 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ+ +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH
Sbjct: 74  PNKTLAAQMAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ + Y   +  L++G  +++ +LL   V  QY R 
Sbjct: 134 SATNSLLTRRDVVVVSSVSCIYGLGTPQEYVDRMTPLEVGQQIDRDDLLRRFVTMQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++IE ++  +P+TG  I  VE + ++
Sbjct: 194 DIDFTRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIEALATLHPVTGDVIDTVEQVFVF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A++ I+ EL  RL +LE +GRLLEAQRL  R TYDLEML+  G C 
Sbjct: 253 PASHYVAGPERMQKAIEGIEAELAERLAQLEHDGRLLEAQRLRMRTTYDLEMLQQIGMCS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR  G PP TL +Y PED LL +DESHVT+PQI  M+ GD  RK TL E+
Sbjct: 313 GIENYSLHIDGRETGTPPNTLLDYFPEDFLLVIDESHVTVPQIGAMHEGDASRKRTLVEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+      T+ +SATPG +E ++  G+ VEQIIRPTGLVDP V 
Sbjct: 373 GFRLPSALDNRPLTFAEFEDRVGQTVYLSATPGDYETQRSDGV-VEQIIRPTGLVDPKVV 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ +E+    ++  RIL+T LTKRMAEDLT YL ER +RV Y+HS+V TL 
Sbjct: 432 VKPTQGQIDDLLEEVRTRVERQERILVTTLTKRMAEDLTTYLAERGVRVEYLHSDVDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LRLG+FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SL+QTIGRAAR
Sbjct: 492 RVELLRELRLGRFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLVQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YADTIT ++  AI+ET RRR KQL +N +H I+PQ +++KI +V D +  ED
Sbjct: 552 NVSGEVHMYADTITPAMAEAIEETERRRTKQLAYNAEHGIDPQPLRKKIADVTDMLARED 611

Query: 741 AATTNI-----------SIDAQQLSLS------KKKGKAH------LKSLRKQMHLAADN 777
             T ++           S+ A++   +      K  G A       +  L +QMH AA++
Sbjct: 612 VDTADLLAGGYRGHEDSSVRARRKHAAEATVREKLAGAAQGDLAELINELTQQMHAAAED 671

Query: 778 LNFEEAARIRDEIKRLK 794
           L+FE AAR+RDEI+ LK
Sbjct: 672 LHFELAARLRDEIQDLK 688


>gi|119717061|ref|YP_924026.1| excinuclease ABC subunit B [Nocardioides sp. JS614]
 gi|119537722|gb|ABL82339.1| Excinuclease ABC subunit B [Nocardioides sp. JS614]
          Length = 706

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/692 (51%), Positives = 479/692 (69%), Gaps = 29/692 (4%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + +  + +  F++ +DY PSGDQPAAI ++ + + +  +  +LLG TG+GKT T+A V E
Sbjct: 4   VTDLERRVAPFKVVSDYQPSGDQPAAIKEITQRLRAGVQDVVLLGATGTGKTATVAWVAE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VM PNK LAAQ  +E +  FP NA+EYFVSYYDYYQPEAYVP+TDTYIEK+SS
Sbjct: 64  QVQRPMLVMQPNKTLAAQFANELRQLFPDNAIEYFVSYYDYYQPEAYVPQTDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D IVVS+VSCIYG+G+ + Y   +V+LK+G+  ++  +L 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVIVVSTVSCIYGLGTPQEYVDRMVRLKVGEEHDRDSILR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV+ QY R D+   RGTFRV GD++EIFP + E++A R+  FG++IE +   +P+TG+ 
Sbjct: 184 RLVEIQYTRNDMTFTRGTFRVRGDTLEIFPVY-EEMAIRIEFFGDEIERMMTLHPVTGEV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +   E + I+  +HYV     +  A++ I+ EL+ +L   E++G+LLEAQRL  R TYD+
Sbjct: 243 VTEDEELYIFPATHYVAGPERMERAIRGIELELEDQLATFERQGKLLEAQRLRMRTTYDV 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   GSC  IENYS ++ GR  G  P  L +Y PED +L +DESHV +PQI GMY GD
Sbjct: 303 EMMRQVGSCSGIENYSMHIDGRTRGSAPNCLLDYFPEDFVLVIDESHVAVPQIGGMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK  L ++GFRLPS MDNRPLR+EE+      TI +SATPG +EL++  G  VEQIIR
Sbjct: 363 MSRKRNLVDHGFRLPSAMDNRPLRWEEFLDRIGQTIYLSATPGDYELDKVGGDTVEQIIR 422

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++  + Q++D+  EINL  ++  R+L+T LTK+M+EDLT+YL +  +R R
Sbjct: 423 PTGLVDPEVVVKPTKGQIDDLIHEINLRVEKNERVLVTTLTKKMSEDLTDYLLDAGVRTR 482

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSEV TL+RIE++RDLRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  S
Sbjct: 483 YLHSEVDTLKRIELLRDLRLGQYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSDKS 542

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT S++ AIDET RRR KQ+ +N  H I+P  +++KI 
Sbjct: 543 LIQTIGRAARNVSGQVHMYADRITPSMEAAIDETNRRRAKQVAYNTAHGIDPTPLRKKIA 602

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKK-----------GKAH---------------- 763
           ++ D +  E+ +T  +    Q L    +K           G+A                 
Sbjct: 603 DITDMLAREEESTQELLDTWQHLDPKHRKAPVPGLSRIAGGEAGQHTADLAGLPSAELAQ 662

Query: 764 -LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            ++ L  QM  AA  L+FE AAR+RDEI  LK
Sbjct: 663 LIQELTDQMKGAAAELHFEVAARLRDEIGDLK 694


>gi|225848324|ref|YP_002728487.1| excinuclease ABC subunit B [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643245|gb|ACN98295.1| excinuclease ABC subunit B [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 662

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/656 (51%), Positives = 470/656 (71%), Gaps = 3/656 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F+++  + P+GDQP AI QL + + S    Q+LLG TG+GKTFT+A +IE   RP ++
Sbjct: 4   SIFKLKAPFEPTGDQPKAIKQLYENLKSGINEQVLLGATGTGKTFTIANLIEKYGRPTLI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           ++ NK LAAQLY E K  FP NAVEYFVSYYDYYQPEAY+P+ D YIEK+S+IN+ IDR+
Sbjct: 64  LSHNKTLAAQLYREIKELFPDNAVEYFVSYYDYYQPEAYIPQKDLYIEKDSAINDSIDRL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSATRSL+ER D IVV+SVSCIYG+G+ E Y ++ +QL +G  ++++ LL  LV+ QY+
Sbjct: 124 RHSATRSLIERPDTIVVASVSCIYGLGTPEFYEKLRLQLYVGMEIDRQTLLRKLVELQYQ 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D  + RGTF+V GD++EI P++ EDV  R+  FG++IE I+E         R +E   
Sbjct: 184 RDDFSLKRGTFKVKGDTVEILPAYTEDVIIRIEFFGDEIENITEIDIFNRDVKRKLERTV 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SHYV PRP +  A+K I+++L++ + E  K+G+ +EA RL QR  YD+EM+   G+
Sbjct: 244 IFPASHYVIPRPDMIEAIKQIQKDLEIEVEEFRKQGKEIEANRLWQRTNYDIEMMLELGT 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSRY  GR PGEPP TL +Y PED LL +DESHVTIPQI  MY GD  RK  L 
Sbjct: 304 CKGIENYSRYFDGRKPGEPPYTLIDYFPEDFLLIIDESHVTIPQIKAMYNGDLARKENLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YG+R+ S  DNRPL+FEE+       I VSATP  WE+E+ +G+IVEQIIRPTGL+DP 
Sbjct: 364 KYGWRMKSAYDNRPLKFEEFVSKIQKAIYVSATPAQWEIERSKGVIVEQIIRPTGLLDPV 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++    Q++D+ +EI    ++  R L+  LTK+MAE+L +YL ER+I+  Y+HSE+ T
Sbjct: 424 IEVKKTEGQIDDLINEIWKVKERNERALVITLTKKMAENLADYLQERDIKAVYLHSEIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER +II++ R GK+DV+VG+NLLREGLD+PE  LVA+LDADK+GFLRSKT+LIQTIGRA
Sbjct: 484 IERAKIIKEFREGKYDVIVGVNLLREGLDMPEVSLVAVLDADKQGFLRSKTALIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN N K ILYAD +T ++   I+ET RRR+ Q E+N+KH I P++VK+   E+ D I L
Sbjct: 544 ARNENGKAILYADKLTPAMVETIEETNRRRKLQQEYNEKHGITPKTVKK---EIKDLISL 600

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+     +  +  +   +++     ++ L KQM   A N  FE+AA++RD++++LK
Sbjct: 601 EELGILELYQEIPEDISTEEDLLKEIEKLEKQMWEYAKNWEFEKAAQVRDKLEKLK 656


>gi|255533917|ref|YP_003094289.1| excinuclease ABC subunit B [Pedobacter heparinus DSM 2366]
 gi|255346901|gb|ACU06227.1| excinuclease ABC, B subunit [Pedobacter heparinus DSM 2366]
          Length = 679

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/667 (52%), Positives = 482/667 (72%), Gaps = 20/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P+GDQPAAI QL++G+++ +  Q LLGVTGSGKTFT+A VI+  Q+P ++++
Sbjct: 3   FQIVSDYKPTGDQPAAIKQLVEGVNNEDHYQTLLGVTGSGKTFTIANVIQQTQKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAV YFVSYYDYYQPEA++  ++TYIEK+ SINE+I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPENAVNYFVSYYDYYQPEAFIASSNTYIEKDLSINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             T +L+  R D IVVSS+SCIYG+G+ E +S+ + +  +G  + +   L SLV+  Y R
Sbjct: 123 RTTSALMSGRRDVIVVSSISCIYGMGNPEDFSRSVFRFSVGLRISRNSFLHSLVEILYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD+++IFP++L D A+RVS FG+DIE +S   P+TG+ +  +E + I
Sbjct: 183 TTTDFKRGTFRVKGDTVDIFPAYL-DNAYRVSFFGDDIEALSVIDPVTGKTLEKLEDMAI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VTP+   N+++  I+EEL++R  +L  +  LLEA+RLE+R+ +D+EM++  G C
Sbjct: 242 YPANLFVTPKERFNSSIWGIQEELEIRKNQLIGDRHLLEAKRLEERVNFDIEMMKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GR PG  P  L +Y P+D L+ +DESHVT+PQI  MY GD  RK +L E
Sbjct: 302 SGIENYSRFFDGRAPGMRPFCLLDYFPDDYLMVIDESHVTVPQIRAMYGGDRSRKMSLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL F+E+  L P TI VSATP  +EL++ +GI++EQ+IRPTGL+DP +
Sbjct: 362 YGFRLPSALDNRPLNFDEFERLAPQTIYVSATPADYELQKSEGIVIEQVIRPTGLLDPLI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R A  QV+D+ DEI+   + G R+L+T LTKRMAE+LT+Y+   NI+ RY+HSEVKTL
Sbjct: 422 DVRPAVNQVDDLLDEIDKTIKLGDRVLVTTLTKRMAEELTKYMDRLNIKCRYIHSEVKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R LRLG+FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS  +LIQTIGRAA
Sbjct: 482 ERVEILRGLRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSDRALIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIME---VI 733
           RN   +VI+YAD +T S++  I+ET RRREKQ+ +N +H I P++V   +E IME   V+
Sbjct: 542 RNDRGRVIMYADNMTDSMERTIEETNRRREKQVAYNLEHGIVPKTVGKSREAIMEQSSVL 601

Query: 734 D----------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
           D          P +  D  +  I+ D     ++K + +  +   RK+M  AA +++F  A
Sbjct: 602 DFSSGERKRAKPYVEVDEVS--IAADPVVQYMTKPEMQKSIDKTRKEMAKAAKDMDFLLA 659

Query: 784 ARIRDEI 790
           AR+RDE+
Sbjct: 660 ARLRDEM 666


>gi|116490460|ref|YP_810004.1| excinuclease ABC subunit B [Oenococcus oeni PSU-1]
 gi|116091185|gb|ABJ56339.1| Excinuclease ABC subunit B [Oenococcus oeni PSU-1]
          Length = 673

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/665 (52%), Positives = 471/665 (70%), Gaps = 17/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL++G++   K Q+LLG TG+GKTFT++ VI ++ +P ++++
Sbjct: 11  FKLHSNYQPTGDQPTAINQLIEGVNKGTKEQVLLGATGTGKTFTISNVIASVNKPTLILS 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++R+
Sbjct: 71  HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRN 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL RND IVV+SVS I+G+G    Y   ++ L+ GD   +  L+  L+  QY R 
Sbjct: 131 SATSSLLSRNDTIVVASVSSIFGLGDPHQYKDHVISLRTGDEYGRNNLMRHLIDIQYVRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++ A RV  FG++I+ I E  PLTG+ +   + I I+
Sbjct: 191 DIDFARGTFRVRGDVVEIFPASEDEKAIRVEFFGDEIDRIREINPLTGEILLEDDFISIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T    L +A   I++E++  + + E++G+LLEAQRL+QR  YD+EML   G   
Sbjct: 251 PAKHFMTNDNILKSATDGIRQEMEECVKKFEQQGKLLEAQRLKQRTEYDIEMLLEMGYTN 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D LL VDESHVT+PQ+ GMY GD  RK TL +Y
Sbjct: 311 GIENYSRWMDGRKQGEPPFTLLDFFPKDFLLVVDESHVTMPQVRGMYNGDQARKKTLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+  E+       I +SATPG +EL +     I EQIIRPTGL+DP +
Sbjct: 371 GFRLPSALDNRPLKLSEFEQHVNQVIYMSATPGDYELSRVTPDNIAEQIIRPTGLLDPEI 430

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  R Q++D+  EIN  A +  R+ +T LTKRM+EDLT YL E  ++V+Y+HS++KTL
Sbjct: 431 EVRPIRGQIDDLLGEINARAAKNERVFITTLTKRMSEDLTTYLKESGVKVQYLHSDIKTL 490

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER E+IR+LRLGKFD LVGINLLREGLD+PE  LVAILDADK+GFLR++ SLIQTIGRAA
Sbjct: 491 ERTEVIRNLRLGKFDALVGINLLREGLDVPEVSLVAILDADKDGFLRNERSLIQTIGRAA 550

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VI+YAD +T+++Q AIDET RRR  Q+++N++HNI P ++K++I   I      
Sbjct: 551 RNSNGHVIMYADVVTENMQKAIDETARRRRIQIKYNEEHNITPTTIKKEIRGSI------ 604

Query: 740 DAATTNI-SIDAQQLSLSK--------KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A +  + S D  +L L+K        K  K  + +L +QM  AA  ++FEEAA++RD I
Sbjct: 605 -AISHEVQSADESKLDLTKVAFADMPIKDQKEMVGNLTEQMKSAAKRMDFEEAAQLRDSI 663

Query: 791 KRLKS 795
             LK+
Sbjct: 664 LELKT 668


>gi|302533819|ref|ZP_07286161.1| excinuclease ABC, B subunit [Streptomyces sp. C]
 gi|302442714|gb|EFL14530.1| excinuclease ABC, B subunit [Streptomyces sp. C]
          Length = 716

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/703 (51%), Positives = 479/703 (68%), Gaps = 41/703 (5%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++   + +  F++ + Y PSGDQPAAIA+L K I + EK  +LLG TG+GK+ T A +IE
Sbjct: 4   VSKIERTVAPFEVVSPYQPSGDQPAAIAELEKRIRAGEKDVVLLGATGTGKSATTAWMIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 64  KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +V LK+G+ +++ +LL 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVPLKVGEEIDRDQLLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ 
Sbjct: 184 RFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I     + ++  SHYV     +  A+  I+ EL  RL ELEK+G++LEAQRL  R TYDL
Sbjct: 243 ISEDRELYVFPASHYVAGPERMEKAITGIEAELAERLAELEKQGKMLEAQRLRMRTTYDL 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   GSC  IENYS ++  R  G  P TL +Y PED LL +DESHVT+PQI  MY GD
Sbjct: 303 EMMRQIGSCSGIENYSLHMDDRERGSAPNTLIDYFPEDFLLVIDESHVTVPQIGAMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G  VEQIIR
Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFLERVGQTVYLSATPGKYELSRSDG-FVEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+VR
Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRGRVEKDERVLVTTLTKKMAEDLTDYFLELGIQVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS
Sbjct: 482 YLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD +T +++ AI+ET RRREKQ+ +N  + I+PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADKMTPAMEKAIEETNRRREKQIAYNTANGIDPQPLRKKIN 601

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAH--------------------------- 763
           +++  I  E+  T  +     + +   K GKA                            
Sbjct: 602 DIVATIAREELDTEELLGTGYRQAKDGKAGKAPVPALGGKAAAAAKGKGGKTAKAAAAAA 661

Query: 764 ------------LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                       ++ + ++M  AA  L FE AARIRDE+  LK
Sbjct: 662 PTDRPAAELAALIEQMTERMRGAAAELQFEVAARIRDEVGELK 704


>gi|227535570|ref|ZP_03965619.1| excision endonuclease subunit UvrB [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227186817|gb|EEI66884.1| excision endonuclease subunit UvrB [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 673

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/661 (52%), Positives = 463/661 (70%), Gaps = 8/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AIA+L KG    +K Q+LLG TG+GKTFTM+ +I  + +P ++++
Sbjct: 12  FDLVSPYQPAGDQPQAIAKLTKGFEEGKKEQILLGATGTGKTFTMSNIIANLNKPTLILS 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH
Sbjct: 72  HNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVS I+G+G    Y   ++ L+ G ++++  LL  LV  Q+ R 
Sbjct: 132 SATSALLERNDVIVVASVSSIFGLGDPHEYKNHVLSLRTGMTIDRNTLLRQLVDIQFDRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  +D A RV  FG++I+ I+E   LTG+ I   + + I+
Sbjct: 192 DIDFQRGRFRVRGDVVEIFPASRDDHAIRVEFFGDEIDRITEVDALTGEVIGTRDHVAIF 251

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I  EL+ +L  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 252 PATHFMTSDEQMQRAIKSIAAELEAQLKVLRSENKLLEAQRLEQRTNYDIEMMREMGFTS 311

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGEPP TL ++ P+D  + VDESHVT+PQI GMY GD  RK  L  Y
Sbjct: 312 GIENYSRHMDGRKPGEPPYTLLDFFPKDFNIMVDESHVTMPQIRGMYNGDRARKQMLVNY 371

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+  E+       + VSATPG +EL++  +  I EQIIRPTGL+DP +
Sbjct: 372 GFRLPSALDNRPLKINEFEQHVHRILYVSATPGPYELDRVPKDDIAEQIIRPTGLLDPKI 431

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EIN       R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTL
Sbjct: 432 EVRPVMGQIDDLVGEINKRVDAHERVFITTLTKKMAEDLTDYLKDMGIKVRYLHSDIKTL 491

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +IIRDLRLGKFDVL+GINLLREG+D+PE  L+AILDADKEGFLR++ SLIQTIGRA+
Sbjct: 492 ERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRAERSLIQTIGRAS 551

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN + KVI+YAD +T S++ AIDET RRR  Q + N++H+I P+++ + I   I      
Sbjct: 552 RNEHGKVIMYADKVTDSMKAAIDETQRRRTIQEKFNEEHHITPKTIIKPIRAAISSYEQS 611

Query: 740 D-----AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           D     A  T   +D + +S + K  K  + +LR QM  AA  L+FE+AA +RD I  L+
Sbjct: 612 DDDKAEAKKTFAEVDYEDMSKADK--KELVANLRSQMQAAAKKLDFEQAASLRDTILELQ 669

Query: 795 S 795
           +
Sbjct: 670 A 670


>gi|229099594|ref|ZP_04230522.1| UvrABC system protein B [Bacillus cereus Rock3-29]
 gi|228683890|gb|EEL37840.1| UvrABC system protein B [Bacillus cereus Rock3-29]
          Length = 658

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/655 (53%), Positives = 478/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++G+ S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGLDSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKIEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|257865936|ref|ZP_05645589.1| excinuclease ABC [Enterococcus casseliflavus EC30]
 gi|257872269|ref|ZP_05651922.1| excinuclease ABC [Enterococcus casseliflavus EC10]
 gi|257799870|gb|EEV28922.1| excinuclease ABC [Enterococcus casseliflavus EC30]
 gi|257806433|gb|EEV35255.1| excinuclease ABC [Enterococcus casseliflavus EC10]
          Length = 665

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/656 (52%), Positives = 468/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AI QL+ G+   +K Q+LLG TG+GKT+T++ +I+ + +P +++A
Sbjct: 12  FDLVSKYQPAGDQPEAIHQLVDGVVGGKKAQILLGATGTGKTYTISNLIKEVNKPTLIIA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 72  HNKTLAGQLYGEFKDFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCI+G+GS   Y++ +V L++G    + +LL  L++ Q++R 
Sbjct: 132 SATSSLLERNDVIVVASVSCIFGLGSPIEYARQVVSLRVGMEKSRDQLLKELIEIQFERN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A R+  FG++I+ I E   LTG+ + + E + I+
Sbjct: 192 DIDFQRGRFRVRGDVVEIFPASRDERALRIEFFGDEIDRIREVDALTGEIMSDTEHVSIF 251

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL  RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 252 PATHFVTNEDHMEHAIASIQSELDERLKVLRAENKLLEAQRLEQRTNYDIEMMREMGYTS 311

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ +DESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 312 GIENYSRHMDGRKEGEPPYTLLDFFPDDFLIVIDESHVTMPQVRGMYNGDRARKQMLVDY 371

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E +Q   +I +QIIRPTGL+DP +E
Sbjct: 372 GFRLPSALDNRPLRLEEFEKHVNQIVYVSATPGPYEYDQTDTVI-QQIIRPTGLLDPVIE 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+M+EDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 431 VRPIMGQIDDLVGEINERVERNERVFVTTLTKKMSEDLTDYFKELGIKVKYLHSDIKTLE 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 491 RTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD +T S+Q AIDET RRR  Q  +N++H I P+++ ++I ++I   + + 
Sbjct: 551 NSEGKVIMYADKMTDSMQRAIDETARRRSIQEAYNEEHGIVPKTIIKEIRDLI--AITKV 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           A  T          LS+++    L    K+M  AA  L+FE AA +RD I  LK++
Sbjct: 609 AEETGEYTTTSYEELSREEKATLLLKFEKEMKDAAKALDFETAATLRDTILELKAA 664


>gi|210621604|ref|ZP_03292717.1| hypothetical protein CLOHIR_00662 [Clostridium hiranonis DSM 13275]
 gi|210154669|gb|EEA85675.1| hypothetical protein CLOHIR_00662 [Clostridium hiranonis DSM 13275]
          Length = 660

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/657 (53%), Positives = 468/657 (71%), Gaps = 11/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI  +   I   EK   LLGVTGSGKTFTMA +IE + +P +++A
Sbjct: 4   FKIHSKFKPTGDQPEAIKTISDAIKRNEKFSTLLGVTGSGKTFTMANIIENVNKPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV  +DTYIEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVASSDTYIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D I++SSVSCIYG+G  + Y +M++ L+ GD  ++ +++  L++ QY+R 
Sbjct: 124 SATAALLERRDVIIISSVSCIYGLGDPKDYKEMMLSLRPGDEKDRDDVIKRLIEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++ A RV  FG++I+ I+E   +TG+ +     + I+
Sbjct: 184 DINFTRGTFRVRGDVLEIFPAGDDEKAIRVEFFGDEIDRITEIDYITGKIVGTRSHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    +  A+K I+ EL+ R+   ++   LLEAQR+EQR  YD+EML+  G CQ
Sbjct: 244 PASHYVTTPERIEEAIKRIEAELEERIQYFKERDMLLEAQRIEQRTNYDIEMLKEIGFCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR  GE P TL ++ PED L+ VDESHVTIPQ+ GMY GD  RK +L + 
Sbjct: 304 GIENYSRHLTGRGEGEKPYTLMDFFPEDFLMIVDESHVTIPQVRGMYAGDRSRKGSLIDN 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       +  +ATPG +E+ Q      EQIIRPTGL+DP ++
Sbjct: 364 GFRLPSAYDNRPLNFEEFEENINQIVFTTATPGPYEI-QHSTTFAEQIIRPTGLLDPEID 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++++  EI    ++G R+L+T LTK+M+EDLT+YL E  I+V+Y+HS++ TLE
Sbjct: 423 VRPIENQIDNLVHEIYSVIEKGERVLVTTLTKKMSEDLTDYLKEIGIKVKYLHSDIATLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLR+GKFDVL+GINLLREGLDIPE  L+AILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RTEIIRDLRMGKFDVLIGINLLREGLDIPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N + +VI+YAD IT S++ AIDET RRRE Q  +NK+H I P++VK+ I   I+     E
Sbjct: 543 NEHGRVIMYADKITDSMRNAIDETKRRREIQDAYNKEHGIIPKTVKKDIRAAIEATQAAE 602

Query: 740 DAATTNI--SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +     I  + D  +L       KA++  L ++M  AA NL FE AA +RD++K L+
Sbjct: 603 EEVVYGIKETDDIDEL-------KANVAKLTEEMMEAAKNLQFERAAELRDKLKELE 652


>gi|116494463|ref|YP_806197.1| excinuclease ABC subunit B [Lactobacillus casei ATCC 334]
 gi|191637848|ref|YP_001987014.1| excinuclease ABC subunit B [Lactobacillus casei BL23]
 gi|301065973|ref|YP_003787996.1| helicase subunit of the DNA excision repair complex [Lactobacillus
           casei str. Zhang]
 gi|122264111|sp|Q03AL7|UVRB_LACC3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238693024|sp|B3WCQ5|UVRB_LACCB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|116104613|gb|ABJ69755.1| Excinuclease ABC subunit B [Lactobacillus casei ATCC 334]
 gi|190712150|emb|CAQ66156.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
           [Lactobacillus casei BL23]
 gi|300438380|gb|ADK18146.1| Helicase subunit of the DNA excision repair complex [Lactobacillus
           casei str. Zhang]
 gi|327381915|gb|AEA53391.1| Excinuclease ABC subunit B [Lactobacillus casei LC2W]
 gi|327385076|gb|AEA56550.1| Excinuclease ABC subunit B [Lactobacillus casei BD-II]
          Length = 671

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/661 (52%), Positives = 463/661 (70%), Gaps = 8/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AIA+L KG    +K Q+LLG TG+GKTFTM+ +I  + +P ++++
Sbjct: 10  FDLVSPYQPAGDQPQAIAKLTKGFEEGKKEQILLGATGTGKTFTMSNIIANLNKPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVS I+G+G    Y   ++ L+ G ++++  LL  LV  Q+ R 
Sbjct: 130 SATSALLERNDVIVVASVSSIFGLGDPHEYKNHVLSLRTGMTIDRNTLLRQLVDIQFDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  +D A RV  FG++I+ I+E   LTG+ I   + + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDDHAIRVEFFGDEIDRITEVDALTGEVIGTRDHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I  EL+ +L  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFMTSDEQMQRAIKSIAAELEAQLKVLRSENKLLEAQRLEQRTNYDIEMMREMGFTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGEPP TL ++ P+D  + VDESHVT+PQI GMY GD  RK  L  Y
Sbjct: 310 GIENYSRHMDGRKPGEPPYTLLDFFPKDFNIMVDESHVTMPQIRGMYNGDRARKQMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+  E+       + VSATPG +EL++  +  I EQIIRPTGL+DP +
Sbjct: 370 GFRLPSALDNRPLKINEFEQHVHRILYVSATPGPYELDRVPKDDIAEQIIRPTGLLDPKI 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EIN       R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTL
Sbjct: 430 EVRPVMGQIDDLVGEINKRVDAHERVFITTLTKKMAEDLTDYLKDMGIKVRYLHSDIKTL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +IIRDLRLGKFDVL+GINLLREG+D+PE  L+AILDADKEGFLR++ SLIQTIGRA+
Sbjct: 490 ERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRAERSLIQTIGRAS 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN + KVI+YAD +T S++ AIDET RRR  Q + N++H+I P+++ + I   I      
Sbjct: 550 RNEHGKVIMYADKVTDSMKAAIDETQRRRTIQEKFNEEHHITPKTIIKPIRAAISSYEQS 609

Query: 740 D-----AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           D     A  T   +D + +S + K  K  + +LR QM  AA  L+FE+AA +RD I  L+
Sbjct: 610 DDDKAEAKKTFAEVDYEDMSKADK--KELVANLRSQMQAAAKKLDFEQAASLRDTILELQ 667

Query: 795 S 795
           +
Sbjct: 668 A 668


>gi|199597263|ref|ZP_03210694.1| excinuclease ABC subunit B [Lactobacillus rhamnosus HN001]
 gi|199591779|gb|EDY99854.1| excinuclease ABC subunit B [Lactobacillus rhamnosus HN001]
          Length = 671

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/661 (52%), Positives = 463/661 (70%), Gaps = 8/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AIA+L KG    +K Q+LLG TG+GKTFTM+ +I  + +P ++++
Sbjct: 10  FDLVSPYKPAGDQPQAIAKLTKGFEEGKKAQILLGATGTGKTFTMSNIIANLNKPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVS I+G+G    Y   ++ L+ G ++++  LL  LV  Q+ R 
Sbjct: 130 SATSALLERNDVIVVASVSSIFGLGDPHEYKNHVLSLRTGMTIDRNTLLRQLVDIQFDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  +D A RV  FG++I+ I+E   LTG+ I   + + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDDHAIRVEFFGDEIDRITEVDALTGEVIGTRDHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I  EL+ RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFMTSDEQMERAIKSISAELEDRLKVLRGENKLLEAQRLEQRTNYDIEMMREMGFTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGEPP TL ++ P+D  + VDESHVT+PQ+ GMY GD  RK  L  Y
Sbjct: 310 GIENYSRHMDGRKPGEPPYTLLDFFPKDFTIMVDESHVTMPQVKGMYNGDRARKQMLINY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+ +E+       + VSATPG +EL +  +  I EQIIRPTGL+DP +
Sbjct: 370 GFRLPSALDNRPLKIDEFEKHVKRILYVSATPGPYELSRVPKEDIAEQIIRPTGLLDPKI 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  E+N       R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTL
Sbjct: 430 EVRPVMGQIDDLVGEVNKRIDAHERVFITTLTKKMAEDLTDYLKDMGIKVRYLHSDIKTL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +IIRDLRLGKFDVL+GINLLREG+D+PE  L+AILDADKEGFLR++ SLIQTIGRA+
Sbjct: 490 ERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRAERSLIQTIGRAS 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN + KVI+YAD +T S++ AIDET RRR  Q + N++H+I P+++ + I   I      
Sbjct: 550 RNEHGKVIMYADKVTDSMKAAIDETRRRRAIQEKFNEEHHIQPKTIIKPIRAAISTYEQS 609

Query: 740 -----DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                DA  T   +D + +S + K  K  + +LR QM  AA  L+FE+AA +RD I  L+
Sbjct: 610 DDEKADAKKTFAEVDYEDMSKADK--KELVANLRSQMQAAAKKLDFEQAASLRDTILELQ 667

Query: 795 S 795
           +
Sbjct: 668 A 668


>gi|27467459|ref|NP_764096.1| excinuclease ABC subunit B [Staphylococcus epidermidis ATCC 12228]
 gi|38258770|sp|Q8CPZ0|UVRB_STAES RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|27315002|gb|AAO04138.1|AE016745_237 exinuclease ABC subunit B [Staphylococcus epidermidis ATCC 12228]
 gi|329723253|gb|EGG59783.1| excinuclease ABC, B subunit [Staphylococcus epidermidis VCU144]
          Length = 661

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/655 (53%), Positives = 471/655 (71%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++++ P GDQP AI +++ G++ R++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKLKSEFEPQGDQPQAIQKIVDGVNERKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +E+ ELL  LV  QY R 
Sbjct: 127 SATSSLFERDDVIIIASVSCIYGLGNPEEYKNLVVSVRVGMEMERSELLRKLVDVQYSRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ IR  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVIREREHFTIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQI GMY GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLIDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP ++
Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYELEHTDE-MVEQIIRPTGLLDPKID 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTENQIDDLLSEIQDRVDKDERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +D +VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSDRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S+Q AIDET RRRE Q+ HNK+H I P+++ +KI +VI   +  D
Sbjct: 546 NDKGEVIMYADKITDSMQYAIDETQRRREIQIAHNKEHGITPKTINKKIHDVISATVESD 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                   +  +  ++KK+ +  ++++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 606 ETNQQQQTELPK-KMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKA 659


>gi|241896136|ref|ZP_04783432.1| excision endonuclease subunit UvrB [Weissella paramesenteroides
           ATCC 33313]
 gi|241870650|gb|EER74401.1| excision endonuclease subunit UvrB [Weissella paramesenteroides
           ATCC 33313]
          Length = 671

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/667 (51%), Positives = 474/667 (71%), Gaps = 5/667 (0%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           IN H+ +   +++ + Y P+GDQP AI +L+ G+ +  K Q+LLG TG+GKTFT++ VI 
Sbjct: 2   INRHTDN--EYELVSKYQPTGDQPEAIRKLVNGLKNGIKEQILLGATGTGKTFTISNVIA 59

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
              +P +V++ NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS
Sbjct: 60  QTNKPVLVLSHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSS 119

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN++ID++R+SAT SLL RND IVV+SVS I+G+G+ E Y   ++ +++GD +E+ +L+ 
Sbjct: 120 INDEIDKLRNSATASLLARNDTIVVASVSSIFGLGNPEQYHDHVINVRVGDILERNDLMH 179

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            L+  Q++R DI   RG FRV GD +E+FP+  +  A R+  FG++++ I E   LTG+ 
Sbjct: 180 RLIDIQFQRNDIDFQRGRFRVRGDVLEVFPASSDAKALRIEFFGDEVDRIREIDSLTGEI 239

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
              ++   I+  +H++T     + A+K I+ EL  +L +LEK+G+LLEAQRL+QR  YD+
Sbjct: 240 TAELDLATIFPATHFMTNDAIRDRALKTIQAELDDQLQKLEKDGKLLEAQRLKQRTEYDI 299

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   G    IENYSR++ GR PGEPP TL ++ P+D ++ VDESHVT+PQ+ GMY+GD
Sbjct: 300 EMIREMGFTTGIENYSRHMDGRQPGEPPFTLLDFFPDDFIIIVDESHVTMPQVRGMYKGD 359

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQII 549
             RK TL  YGFRLPS +DNRPLR EE+       I +SATPG +E ++  +  + +QII
Sbjct: 360 RARKETLINYGFRLPSALDNRPLRIEEFEKHVNQIIYMSATPGDYENDRVPETDVAQQII 419

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           RPTGL+DP +E+R    Q++D+  EIN       R+ +T LTK+MAEDLT+YL +  I+V
Sbjct: 420 RPTGLLDPEIEVRPVMGQIDDLIGEINKRVDNEERVFVTTLTKKMAEDLTDYLEDVGIKV 479

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           +Y+HS++KTLER EIIRDLRLGKFDVLVGINLLREG+D+PE  L+AILDADKEGFLR+  
Sbjct: 480 KYLHSDIKTLERTEIIRDLRLGKFDVLVGINLLREGIDVPEVSLIAILDADKEGFLRNTR 539

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           SLIQTIGRAARN N  VI+YAD++T S+Q A+DET+RRR  Q+++N+ HNI P ++K+ I
Sbjct: 540 SLIQTIGRAARNENGHVIMYADSVTASMQAAMDETSRRRHIQIQYNEDHNITPHTIKKAI 599

Query: 730 MEVIDPILLEDAATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
            ++I      D  +T      D     +++    A + +L  QM  AA  L+FE+AA +R
Sbjct: 600 RDLISASHEVDNQSTEKGSFTDVAFKDMARDDQNAMIANLEDQMRSAAKRLDFEDAANLR 659

Query: 788 DEIKRLK 794
           D +  LK
Sbjct: 660 DAVMELK 666


>gi|330686480|gb|EGG98074.1| excinuclease ABC, B subunit [Staphylococcus epidermidis VCU121]
          Length = 661

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/655 (53%), Positives = 471/655 (71%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P GDQP AI +++KG+   ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKLNSEFDPQGDQPEAIKKIVKGVKEGKRHQTLLGATGTGKTFTMSNVIQQVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +E+ ELL  LV  QY R 
Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMERSELLRKLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++++ I E   LTG+ IR  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEVDRIREVNYLTGEVIREREHFAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP ++
Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTNQLVYVSATPGPYEIEHTDE-MVEQIIRPTGLLDPKID 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTENQIDDLLSEIQDRIDKNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +D +VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ AIDET RRR+ Q+ HN+KH I PQ++ +KI +VI   +  D
Sbjct: 546 NDRGEVIMYADKITDSMRYAIDETQRRRDIQMAHNEKHGITPQTINKKIHDVISATVESD 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               N  I+  +  ++KK+ +  ++++ K+M  AA +L+FE+A  +RD +  LKS
Sbjct: 606 DTNENKQIEVPK-KMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKS 659


>gi|226306795|ref|YP_002766755.1| UvrABC system protein B [Rhodococcus erythropolis PR4]
 gi|226185912|dbj|BAH34016.1| UvrABC system protein B [Rhodococcus erythropolis PR4]
          Length = 720

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/692 (52%), Positives = 480/692 (69%), Gaps = 33/692 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAIA+L K I+  EK  +LLG TG+GK+ T A +IE +QRPA+VMA
Sbjct: 28  FEVVSPYEPAGDQPAAIAELEKRINEGEKDVVLLGATGTGKSATTAWLIEKLQRPALVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SS+N+ ++R+RH
Sbjct: 88  PNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSVNDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ +SY    +QL +G  V +   L  LV  QY R 
Sbjct: 148 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSIQLDVGVEVPRDAFLRLLVDVQYNRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG  +R V+T++I+
Sbjct: 208 DMAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGDIVRQVDTVRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A K I+ EL+ RL ELE +G+LLEAQRL  R  YDLEM++  G C 
Sbjct: 267 PATHYVAGPERMERAAKDIEAELEERLAELEGKGKLLEAQRLRMRTQYDLEMIKQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG  P TL +Y PED LL +DESHVT+PQI  MY GD  RK  L E+
Sbjct: 327 GIENYSRHIDGRGPGTAPATLIDYFPEDFLLVIDESHVTVPQIGAMYEGDMSRKRNLVEF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE++     T+ +SATPG +EL Q  G  VEQ+IRPTGL+DP V 
Sbjct: 387 GFRLPSATDNRPLTWEEFSKRIGQTVYLSATPGKYELGQSGGEFVEQVIRPTGLIDPEVI 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A++  R+L+T LTK+M+EDLT+YL E  IRVRY+HS++ TL 
Sbjct: 447 VKPTKGQIDDLVHEIRERAERDERVLVTTLTKKMSEDLTDYLLELGIRVRYLHSDIDTLR 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+  AI+ET RRREKQ+ +N+K  ++PQ +++KI +++D +  E+
Sbjct: 567 NVSGQVHMYADKITASMAQAIEETERRREKQVAYNEKMGVDPQPLRKKIADILDQV-YEE 625

Query: 741 AATTNISIDAQQLSLSKKKGKAH-----------------------------LKSLRKQM 771
           A  T  S+D      +  +G+                               +K L  QM
Sbjct: 626 AEDTAASVDVGGSGRNATRGRRAQGEAGRAVSAGVYEGRDTKSMPRAELADLVKELTDQM 685

Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
             AA +L FE A R+RDEI  LK     +G+D
Sbjct: 686 MNAARDLQFELAGRLRDEISDLKKE--LRGMD 715


>gi|315641119|ref|ZP_07896198.1| excision endonuclease subunit UvrB [Enterococcus italicus DSM
           15952]
 gi|315483127|gb|EFU73644.1| excision endonuclease subunit UvrB [Enterococcus italicus DSM
           15952]
          Length = 664

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/655 (52%), Positives = 471/655 (71%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y P+GDQP AI QL++ I+  +K Q+LLG TG+GKT+T++ VI+ + +P +++A
Sbjct: 10  FQLVSEYQPAGDQPEAIRQLVQHINDGKKEQILLGATGTGKTYTISNVIQQVNKPTLILA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND +VV+SVSCI+G+GS   Y + +V ++ G  + + E+L  L+  Q++R 
Sbjct: 130 SATSSLLERNDVVVVASVSCIFGLGSPFEYQKQVVSIREGMEISRDEVLRRLIDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A R+  FG++++ I E   LTG+   + E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPASRDERALRIEFFGDEVDRIREVDALTGEVYADTEHVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  I+EEL +RL  L +  +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFLTDGDHMEVAIAAIQEELALRLAVLRENNQLLEAQRLEQRTNYDIEMMREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ VDESHVT+PQI GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRKEGEPPYTLLDFFPDDFLIVVDESHVTMPQIRGMYNGDRARKQMLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       I VSATPG +E E    ++V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRIEEFEKHVHQIIYVSATPGPYEYEHTD-LVVQQIIRPTGLLDPLIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+M+EDLT+YLYE  I+V+Y+HS++KTLE
Sbjct: 429 VRPIMGQIDDLVGEINERVDRDERVFITTLTKKMSEDLTDYLYELGIKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLGKFDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGKFDVLIGINLLREGLDVPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + KVI+YAD +T S+  AI+ET RRR  Q  +N++H I P ++K++I ++I   + + 
Sbjct: 549 NSSGKVIMYADKMTDSMTRAIEETARRRGLQEAYNEEHGIVPVTIKKEIRDLIR--VSKV 606

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A  T   + A+   LSKK  +  +  L  +M   A  L+FE AA +RD I  LK+
Sbjct: 607 AEDTPEPLLAKLSDLSKKDKRELIVKLEAEMREEAKALHFEAAATLRDTILELKA 661


>gi|229187375|ref|ZP_04314518.1| UvrABC system protein B [Bacillus cereus BGSC 6E1]
 gi|228596079|gb|EEK53756.1| UvrABC system protein B [Bacillus cereus BGSC 6E1]
          Length = 658

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/655 (54%), Positives = 478/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                 +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 EPEIYEATPAKK--MTKKEREKTIAKVEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|311031898|ref|ZP_07709988.1| excinuclease ABC subunit B [Bacillus sp. m3-13]
          Length = 659

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/658 (54%), Positives = 475/658 (72%), Gaps = 7/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AIA++++G+   +K Q LLG TG+GKTFT++ VI+A+ +P +++A
Sbjct: 4   FELVSGYKPDGDQPTAIAEIVEGLKKGKKHQTLLGATGTGKTFTVSNVIQAVNKPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 64  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ERND I+++SVSCIYG+GS E Y  ++V L+ G   E+  LL  LV  QY R 
Sbjct: 124 SATASLFERNDVIIIASVSCIYGLGSPEEYRDLVVSLRTGMEKERNVLLRDLVDIQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ + +   + I+
Sbjct: 184 DIDFKRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEILGDRNHVSIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I+ EL+ RL EL + G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 244 PASHFVTREEKMKKAIVNIQAELEERLEELREAGKLLEAQRLEQRTRYDLEMMAEMGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL ++ PED LL +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 304 GIENYSRHLTLRPAGSTPYTLMDFFPEDFLLVIDESHVTLPQIRGMFNGDQARKQVLVDH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRFEE+       + VSATPG +ELE     +VEQIIRPTGL+DP +E
Sbjct: 364 GFRLPSAKDNRPLRFEEFEKKTAQLVYVSATPGPYELEHTPK-MVEQIIRPTGLLDPIIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI+   ++  R+L+T LTK+M+EDLT YL E  I+V Y+HSE+KTL+
Sbjct: 423 VRPIKGQIDDLIGEIHKRVEKDERVLVTTLTKKMSEDLTAYLKELGIKVAYLHSEIKTLD 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIR+LR+GK DVL+GINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RIEIIRELRMGKHDVLIGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD ITKS+ +A++ET RRRE Q  +N +H I P ++K+K+ E+I    +  
Sbjct: 543 NSNGKVIMYADKITKSMDIALNETKRRREIQEAYNLEHGITPTTIKKKVPELIRATFV-- 600

Query: 741 AATTNISIDAQQLSL---SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            A  + + D +  SL   +KK+ +  ++S+ ++M  AA  L+FE AA +RD I  LK+
Sbjct: 601 -AEEDGNYDGKAPSLRPKNKKEREKLIESMEQEMKDAAKALDFERAAELRDLILELKA 657


>gi|50954810|ref|YP_062098.1| excinuclease ABC subunit B [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71658761|sp|Q6AF52|UVRB_LEIXX RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|50951292|gb|AAT88993.1| excinuclease ABC subunit B [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 688

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/668 (51%), Positives = 474/668 (70%), Gaps = 16/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y PSGDQP AIA+L   I + E   +LLG TG+GK+ T A ++EA+QRP +V+A
Sbjct: 10  FEVVSEYQPSGDQPKAIAELAGRITAGETDVVLLGATGTGKSATTAWLVEAVQRPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN +++R+RH
Sbjct: 70  HNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINAEVERLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T SLL R D +VVS+VSCIYG+G+ E Y + +V L++G +V + +L+   V  QY+R 
Sbjct: 130 STTNSLLSRRDVVVVSTVSCIYGLGAAEEYLEAMVALQVGQNVGRDQLIRRFVAMQYERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD+IEI P + E+ A R+ +FG++IE +   +PLTG+ +   + + ++
Sbjct: 190 DIDFSRGKFRVRGDTIEIIPVY-EEHALRIELFGDEIEALYSLHPLTGEVLARTDAVSVF 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY     T+  A+  I+ EL  RL+ELE+EG+LLEAQRL  R  +D+EM+E  G C 
Sbjct: 249 PATHYAASPATIQRAIGTIQTELHDRLVELEREGKLLEAQRLRMRTQFDIEMMEQIGFCS 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P  L +Y P+D L+ +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 309 GIENYSRHIDGRAPGEAPHCLLDYFPDDFLVVIDESHVTVPQIGAMYEGDASRKRTLVEH 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPLR+ E+      T+ +SATPG +EL    G +VEQIIRPTGLVDP + 
Sbjct: 369 GFRLPSAMDNRPLRWNEFKERVGQTVYLSATPGQYELGIADG-VVEQIIRPTGLVDPQIL 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ +EI   A++  R+L+T LTK+MAE+LT++L E  ++VRY+H++V TL 
Sbjct: 428 VKPTKGQIDDLLEEIRARAERDERVLVTTLTKKMAEELTDFLAEAGVKVRYLHADVDTLR 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++ +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 488 RVELLTELRSGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD +T S++ AI+ET+RR E Q+E+N+ + I+PQ ++++I ++ D +  E+
Sbjct: 548 NVSGEVHMYADVLTDSMKKAIEETSRRSELQVEYNRANGIDPQPLRKRIADITDILAREE 607

Query: 741 AATTNISIDAQQLSLS----------KKKGKAHLKS----LRKQMHLAADNLNFEEAARI 786
           A T  I     Q   S            +G A L+S    L  QM  AA  L FE AAR+
Sbjct: 608 ADTAKILAGRDQKRKSPTPSLRSGGIAAQGAAELESLIADLNAQMLAAAGELKFELAARL 667

Query: 787 RDEIKRLK 794
           RDE+  LK
Sbjct: 668 RDELSDLK 675


>gi|126435595|ref|YP_001071286.1| excinuclease ABC subunit B [Mycobacterium sp. JLS]
 gi|126235395|gb|ABN98795.1| Excinuclease ABC subunit B [Mycobacterium sp. JLS]
          Length = 719

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/690 (51%), Positives = 482/690 (69%), Gaps = 30/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI +L + I + E+  +LLG TG+GK+ T A +IE +QRP ++MA
Sbjct: 28  FEVVSPYQPAGDQPAAIDELERRIRAGERDVVLLGATGTGKSATTAWLIERLQRPTLLMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 88  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ +SY    V+LK+GD V +  LL  LV  QY R 
Sbjct: 148 SATSSLLSRRDVVVVASVSCIYGLGTPQSYMDRSVELKVGDEVPRDALLRLLVDVQYARN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI PS+ E++A R+  FG+++E +   +PLTG  +R V++++++
Sbjct: 208 DMAFTRGTFRVRGDTVEIIPSY-EELAVRIEYFGDEVEALYYMHPLTGDVVRRVDSLRVF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I++EL+ RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 267 PATHYVAGPERMAQAISSIEKELEERLAELEGQGKLLEAQRLRMRTNYDIEMMRQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG  P TL +Y PED LL +DESHVT+PQI GMY GD  RK  L ++
Sbjct: 327 GIENYSRHIDGRGPGTAPATLIDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVDF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE+      T+ +SATPG +E+ Q  G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSAVDNRPLTWEEFASRIGQTVYLSATPGPYEMSQSGGEFVEQVIRPTGLVDPQVI 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI    +   R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 447 VKPTKGQIDDLIGEIRKRTELDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSEVDTLR 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRR KQ+ +N++  I+P+ +++KI +++D +  E 
Sbjct: 567 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEERGIDPKPLRKKIADILDQVYREA 626

Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773
             T  + +     + S+ +      G+A                      +K L +QM  
Sbjct: 627 DDTETVEVGGSGRNASRGRRAQGEPGRAVSAGIVEGRDTANMPRAELADLIKDLTEQMMT 686

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE AARIRDEI+ LK     +G+D
Sbjct: 687 AARDLQFELAARIRDEIQDLKKE--LRGMD 714


>gi|220928838|ref|YP_002505747.1| excinuclease ABC subunit B [Clostridium cellulolyticum H10]
 gi|219999166|gb|ACL75767.1| excinuclease ABC, B subunit [Clostridium cellulolyticum H10]
          Length = 660

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/658 (54%), Positives = 479/658 (72%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AIA+L KGI   +K Q LLGVTGSGKT+TMAKVIE +Q+P +V+A
Sbjct: 7   FEVISEYKPMGDQPKAIAKLSKGILEGQKHQTLLGVTGSGKTYTMAKVIEQVQKPTLVIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP+N VEYFVSYYDYYQPEAY+P TDTYIEK+SSINE+ID++RH
Sbjct: 67  HNKTLAAQLCSEFKEFFPNNVVEYFVSYYDYYQPEAYIPSTDTYIEKDSSINEEIDKLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G  E Y+ +++ L++G   ++ +++  LV  QY+R 
Sbjct: 127 SATAALFERRDVIIVASVSCIYGLGDPEDYTDLMLSLRVGMQKDRDDVIKKLVDIQYERN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I   RG FRV GD +EIFP++  +   RV  FG++IE I+E   LTG+ +   + I ++
Sbjct: 187 EIDFRRGRFRVRGDVLEIFPANSSEKVLRVEFFGDEIERITEVDYLTGEIVGTRDHIAVF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T R  ++ AM  I++EL+ RL + + E +LLEAQRLEQR  YDLEM+   G CQ
Sbjct: 247 PASHYATSRHKMDRAMVTIEKELEERLEQFKMEDKLLEAQRLEQRTRYDLEMMSEIGFCQ 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++GR  G  P TL +Y P+D LL +DESHVT+ Q+  MY GD  RK +L EY
Sbjct: 307 GIENYSRHISGREAGSSPYTLMDYFPDDYLLVIDESHVTVSQVGAMYNGDRSRKESLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+       + VSATP ++E E     IVEQIIRPTGL+DP + 
Sbjct: 367 GFRLPSAFDNRPLKFHEFEERVNQVVYVSATPANYEREHSTQ-IVEQIIRPTGLIDPEIT 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EIN+ A++  R+L+T LTK+MAEDLT+Y+ E +IRV+Y+HS+V T E
Sbjct: 426 VKPVKGQIDDLIGEINMRAEKHQRVLVTTLTKKMAEDLTDYMKELDIRVKYLHSDVVTFE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 486 RMEIIRDLRLGVFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           N    VI+YAD IT S+Q AI ET RRR+ Q+++N+KH I P ++++ +  V++   +  
Sbjct: 546 NSEGMVIMYADNITGSMQRAISETNRRRQIQMDYNEKHGIVPTTIQKSVRNVLEATKVAE 605

Query: 739 -EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            ED   T    + +   +S+++ +  +  L+K+M  AA +L FE AA +RD+I+ L+ 
Sbjct: 606 EEDKYYT----EKKATQMSEQELENLIAKLQKEMKQAAADLQFERAAELRDKIELLRG 659


>gi|88856202|ref|ZP_01130862.1| excinuclease ABC subunit B [marine actinobacterium PHSC20C1]
 gi|88814521|gb|EAR24383.1| excinuclease ABC subunit B [marine actinobacterium PHSC20C1]
          Length = 690

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/685 (50%), Positives = 484/685 (70%), Gaps = 36/685 (5%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           ++ +  F++ ++Y PSGDQP AI QL + I++ E   +LLG TG+GK+ T A +IE +QR
Sbjct: 4   TRSVRPFEVISEYTPSGDQPEAIRQLAQRINAGETDVVLLGATGTGKSATTAWLIEQVQR 63

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P ++M+ NK LAAQL +EF++  P+NAVEYFVSYYDYYQPEAY+P+TDT+IEK+SS+N +
Sbjct: 64  PTLIMSHNKTLAAQLANEFRDLMPNNAVEYFVSYYDYYQPEAYIPQTDTFIEKDSSVNAE 123

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++R+RHS T SLL R D +VVS+VS IYG+G+ ESY + ++ L++G  ++++ L+   V 
Sbjct: 124 VERLRHSTTNSLLSRRDTVVVSTVSSIYGLGAAESYLEAMIALQVGMRIDRETLIRKFVG 183

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY+R D    RG FRV GD+IEI P + E++A R+ MFG++IE +   +PLTG+ I+ +
Sbjct: 184 MQYQRNDYDFSRGNFRVRGDTIEIIPVY-EELAIRIEMFGDEIEALYSLHPLTGEIIKQM 242

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           + + ++  +HY     T+  A+  I+EEL  RL  LE++G+LLEAQRL  R T+D+EM+E
Sbjct: 243 DAVSVFPGTHYSASPDTIKRAIVSIQEELADRLGVLERQGKLLEAQRLRMRTTFDIEMME 302

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYS ++ GR PGEPP  L +Y PED L+ +DESHVT+PQI  MY GD  RK
Sbjct: 303 QIGFCNGIENYSLHMDGRQPGEPPSCLLDYFPEDFLVVIDESHVTVPQIGAMYEGDASRK 362

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI---IVEQIIRP 551
            TL E+GFRLPS +DNRPL++EE+       I +SATPG +EL    GI   IVEQ+IRP
Sbjct: 363 RTLVEHGFRLPSALDNRPLKWEEFLERAGQKIYLSATPGRYEL----GITDSIVEQVIRP 418

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP + ++ ++ Q++D+ ++I L  ++  RIL+T LTK+MAE+LTE+L E  +RVRY
Sbjct: 419 TGLIDPHIVVKPSKGQIDDLLEQIRLRVEKNERILVTTLTKKMAEELTEFLSEHGVRVRY 478

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS+V TL R+E++ +LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSL
Sbjct: 479 LHSDVDTLRRVELLTELRQGVYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSL 538

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARNV+ +V +YAD +T+S+Q AIDET RRREKQ+ +N +H I+PQ +++KI +
Sbjct: 539 IQTIGRAARNVSGEVHMYADVVTRSMQFAIDETDRRREKQVAYNTEHGIDPQPLRKKIAD 598

Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAH----------------------LKSLRK 769
           + D +L E A T      A+ L+   + GK                        +  L +
Sbjct: 599 ITDALLREGADT------AELLATRNRDGKKRTPTPRLSREGIAASGGNDLEQIIADLNE 652

Query: 770 QMHLAADNLNFEEAARIRDEIKRLK 794
           QM  AA  L FE AAR+RDE++ LK
Sbjct: 653 QMLQAASELKFELAARLRDEVQDLK 677


>gi|291525875|emb|CBK91462.1| excinuclease ABC, B subunit [Eubacterium rectale DSM 17629]
          Length = 660

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/656 (53%), Positives = 466/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL+KG     + + LLGVTGSGKTFTMA VI A+ +P ++++
Sbjct: 3   FKLHSKYKPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIAALNKPTLIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP++DTYI K+SS+N++ID++R 
Sbjct: 63  HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQSDTYIAKDSSVNDEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IVV+SVSCIYG+GS + ++ M + L+ G   ++ +L  +L+  QY R 
Sbjct: 123 SATAALTERKDVIVVASVSCIYGLGSPDEWTGMSISLRPGQERDRDDLARALIDLQYTRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD ++IFP++ +D A RV  FG++I+ I E   LTG+   ++E   I+
Sbjct: 183 DMDFHRGTFRVHGDVLDIFPANADDTAIRVEFFGDEIDRIVEVDVLTGEVKCSLEHTMIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  +  +N A   I++EL  R+   + E +L+EAQR+ +R  +D+EM+  TG C 
Sbjct: 243 PASHYVVSQEKINEACLNIEKELDERVKYFKGEDKLIEAQRIAERTNFDIEMMRETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L    PGEPP TL ++ P+D L+ VDESH+TIPQI GMY GD  RK TL +Y
Sbjct: 303 GIENYTRHLNFAKPGEPPMTLIDFFPDDFLIIVDESHITIPQIGGMYAGDRSRKTTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATP  +E E  + +  EQIIRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLNFEEFEGKIDQMLFVSATPNKYENEH-ELLRAEQIIRPTGLLDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N       ++L+T LTKRMAEDLT Y+ E  IRV+Y+HS++ TLE
Sbjct: 422 VRPVEGQIDDLVSEVNKETANHHKVLITTLTKRMAEDLTNYMAELGIRVKYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S+++AIDET RRR+ Q E+N+ H I PQ++++ + ++I  I  + 
Sbjct: 542 NSEGHVIMYADKITDSMRVAIDETKRRRKVQEEYNEAHGITPQTIQKSVRDLI-AISKKV 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           AA  N ++D    S+SKK+ + H+  + K+M  AA  LNFE AA  RD++  LK++
Sbjct: 601 AADEN-ALDKDPESMSKKELEKHIADIEKKMKKAAAELNFEAAAEYRDKLIMLKNT 655


>gi|238925135|ref|YP_002938652.1| excinuclease ABC subunit B [Eubacterium rectale ATCC 33656]
 gi|259710326|sp|C4ZHN1|UVRB_EUBR3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238876811|gb|ACR76518.1| excinuclease ABC subunit B [Eubacterium rectale ATCC 33656]
          Length = 660

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/656 (53%), Positives = 466/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL+KG     + + LLGVTGSGKTFTMA VI A+ +P ++++
Sbjct: 3   FKLHSKYKPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIAALNKPTLIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP++DTYI K+SS+N++ID++R 
Sbjct: 63  HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQSDTYIAKDSSVNDEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IVV+SVSCIYG+GS + ++ M + L+ G   ++ +L  +L+  QY R 
Sbjct: 123 SATAALTERKDVIVVASVSCIYGLGSPDEWTGMSISLRPGQERDRDDLARALIDLQYTRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD ++IFP++ +D A RV  FG++I+ I E   LTG+   ++E   I+
Sbjct: 183 DMDFHRGTFRVHGDVLDIFPANADDTAIRVEFFGDEIDRIVEVDVLTGEVKCSLEHTMIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  +  +N A   I++EL  R+   + E +L+EAQR+ +R  +D+EM+  TG C 
Sbjct: 243 PASHYVVSQEKINEACLNIEKELDERVKYFKGEDKLIEAQRIAERTNFDIEMMRETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L    PGEPP TL ++ P+D L+ VDESH+TIPQI GMY GD  RK TL +Y
Sbjct: 303 GIENYTRHLNFAKPGEPPMTLIDFFPDDFLIIVDESHITIPQIGGMYAGDRSRKTTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATP  +E E  + +  EQIIRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLNFEEFEGKIDQMLFVSATPNKYENEH-ELLRAEQIIRPTGLLDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N       ++L+T LTKRMAEDLT Y+ E  IRV+Y+HS++ TLE
Sbjct: 422 VRPVEGQIDDLVSEVNKETANHHKVLITTLTKRMAEDLTNYMAELGIRVKYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S+++AIDET RRR+ Q E+N+ H I PQ++++ + ++I  I  + 
Sbjct: 542 NSEGHVIMYADKITDSMRVAIDETKRRRKVQEEYNEAHGITPQTIQKSVRDLI-AISKKV 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           AA  N ++D    S+SKK+ + H+  + K+M  AA  LNFE AA  RD++  LK++
Sbjct: 601 AADEN-ALDKDPESMSKKELEKHIADIEKKMKKAAAELNFEAAAEYRDKLIMLKNT 655


>gi|206901994|ref|YP_002250600.1| excinuclease ABC, B subunit [Dictyoglomus thermophilum H-6-12]
 gi|206741097|gb|ACI20155.1| excinuclease ABC, B subunit [Dictyoglomus thermophilum H-6-12]
          Length = 662

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/650 (54%), Positives = 462/650 (71%), Gaps = 4/650 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +++ P GDQP AI +L +G+    + Q L+GVTGSGKTFTMA +I  +Q+P +V+A
Sbjct: 4   FILVSEFKPCGDQPQAIEKLTEGVKRGLRYQTLIGVTGSGKTFTMANIIANVQKPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P+TDTYIEK++ IN++IDR+RH
Sbjct: 64  PNKTLAAQLYSEFKEFFPYNAVEYFVSYYDYYQPEAYIPQTDTYIEKDADINDRIDRLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T SLL R D IVV+SVSCIYG+GS   Y++MI+ +K G+ + +  LL  L+K QY+R 
Sbjct: 124 STTSSLLSRRDVIVVASVSCIYGLGSPTDYAEMILMVKRGEDLPRDTLLRKLIKLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD +E+FP   E  A R+  +G+ IE ISE  PL G+++ +   + IY
Sbjct: 184 DYEFTRGKFRVRGDVVEVFPIGGE-TAIRIEYWGDTIERISEIDPLNGKRVVDFNEVFIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY+ P   +  A++ IK EL+ RL EL  +G+ LEA+RLE R  YD+E+L   G C+
Sbjct: 243 PATHYIAPTEKMERAIESIKRELEERLEELRSQGKFLEAKRLEARTLYDIELLREVGYCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GR PGEPP TL +Y P+D L+F+DESH+TIPQ+  MY GD  RK  L EY
Sbjct: 303 GIENYSRHFDGRKPGEPPYTLLDYFPDDFLVFIDESHLTIPQLRAMYHGDKSRKDNLVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+    P  I VSATP  +EL   +  +VEQ+IRPTGL+DP +E
Sbjct: 363 GFRLPSAYDNRPLTFEEFWERVPQVIFVSATPAEFELSVSEQ-VVEQLIRPTGLLDPEIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +     Q++ +  EI     +G R+L+T LTKR AEDL EYL    I V Y+HSE++TLE
Sbjct: 422 VHPTEGQIDHLISEIKKVVARGERVLVTTLTKRTAEDLVEYLSNLGINVTYLHSEIETLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  I++ LRLGKFDVLVGINLLREGLD+PE  LVAILDAD+EGFLRS+ SLIQ +GRAAR
Sbjct: 482 RTGILQSLRLGKFDVLVGINLLREGLDLPEVSLVAILDADREGFLRSERSLIQVMGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN KVI+YAD IT S++ AI+ET RRR  Q+E+N+ H I P+S+K+ + EV D   +E 
Sbjct: 542 NVNGKVIMYADVITDSMRRAIEETQRRRRIQMEYNQAHGITPKSIKKPVKEVFD--FVEA 599

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            +   +   A    LS  + +  +K L K+M+ AA  L+FE+AA +RD+I
Sbjct: 600 VSEKKVDYKAVSKKLSIDEIEEVIKQLEKEMYEAAAELDFEKAAYLRDQI 649


>gi|331697648|ref|YP_004333887.1| UvrABC system protein B [Pseudonocardia dioxanivorans CB1190]
 gi|326952337|gb|AEA26034.1| UvrABC system protein B [Pseudonocardia dioxanivorans CB1190]
          Length = 733

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/692 (51%), Positives = 484/692 (69%), Gaps = 32/692 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQPAAI +L + + + E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 40  FEVVSEYEPAGDQPAAIDELERRLRAGEQDVVLLGATGTGKSATTAWLIERVQRPTLVMA 99

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN  ++R+RH
Sbjct: 100 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINSDVERLRH 159

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV+SVSCIYG+G+ +SY    VQL +G  VE+  LL +LV  QY R 
Sbjct: 160 SATQNLLSRRDVVVVASVSCIYGLGTPQSYLDRSVQLDVGSEVERDALLRALVDVQYTRN 219

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P++ E++A R+  FG++IE +   +PLTG  IR V+T++I+
Sbjct: 220 DMAFARGTFRVRGDTVEIIPAY-EELAIRIEFFGDEIEALYYLHPLTGDVIRQVDTVRIF 278

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A++ I+ EL+ RL ELE++G++LEAQRL  R  YD+EM+   G C 
Sbjct: 279 PATHYVAGPERMERAVRDIEAELEERLAELERQGKMLEAQRLRMRTQYDIEMIRQVGFCS 338

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y P+D LL +DESHVT+PQI GMY GD  RK  L E+
Sbjct: 339 GIENYSRHIDGRAAGSAPATLLDYFPDDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEF 398

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE+      T+ +SATPG++EL +  G  VEQ+IRPTGLVDP V 
Sbjct: 399 GFRLPSAVDNRPLTWEEFADRIGQTVYLSATPGAYELSRTGGEFVEQVIRPTGLVDPEVV 458

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI L  ++  R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 459 VKPTKGQIDDLVHEIRLRTERDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSEVDTLR 518

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 519 RVELLRQLRTGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAAR 578

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739
           NV+ +V +YADT+T+S+Q AIDET RRR KQ+ +N +  I+PQ +++KI +++D +  E 
Sbjct: 579 NVSGQVHMYADTVTESMQHAIDETDRRRAKQIAYNTEKGIDPQPLRKKIADILDQVYREA 638

Query: 740 ----------------------------DAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771
                                        +A++ I       S+ + +    ++ +  QM
Sbjct: 639 EDGEVPVGGSGRNQSRGKRAAGEPGRATASASSGIVAGRDTKSMPRAELADLIQQMSDQM 698

Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
             AA +L FE AAR+RDEI  LK     +G+D
Sbjct: 699 LAAARDLQFELAARLRDEIADLKKE--MRGMD 728


>gi|228903640|ref|ZP_04067760.1| UvrABC system protein B [Bacillus thuringiensis IBL 4222]
 gi|228855908|gb|EEN00448.1| UvrABC system protein B [Bacillus thuringiensis IBL 4222]
          Length = 658

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 478/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G    + +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKGRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|104773722|ref|YP_618702.1| excinuclease ABC subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|16124250|gb|AAL14788.1| UvrB [Lactobacillus delbrueckii]
 gi|103422803|emb|CAI97444.1| Excinuclease ABC, subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 680

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/657 (52%), Positives = 468/657 (71%), Gaps = 2/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQ  AI QL  G  + +K Q+L G TG+GKT+TMA VI  M +P +V+ 
Sbjct: 10  FELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAKMNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +L+ RND IVV+SVSCIYG+G    Y   ++ +  G   E+  LL  LV  QY R 
Sbjct: 130 AATSALMSRNDVIVVASVSCIYGLGDPREYEASVLNVYTGQEYERNTLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + RG FRV GD +E+FP+   D A+R+  FG++I+ I E  PLTG+     ++I ++
Sbjct: 190 DIDLQRGRFRVRGDVVEVFPAGYSDRAYRIEFFGDEIDRIVEVDPLTGEVHGVRDSISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L  A+  IK E+  ++ + EKEG+LLEA+R++QR TYDLEML   G   
Sbjct: 250 PATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLEMLREVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR +  R  GEPP TL ++ P+DSL+ +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL +    IVEQ+IRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNRTSR-IVEQVIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EINL  ++  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVAEINLRIERRERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   LIQT+GRAAR
Sbjct: 489 RMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLIQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT S+++AIDET RRR  Q+++N++H I P+++ + + ++I  +  + 
Sbjct: 549 NANGEVIMYADRITDSMKMAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDMISVVKADK 608

Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A  + S  D     L+ K+ K  + +L++QM  AA  L+FE AA +RD I  L+ S
Sbjct: 609 EAEKSDSFADLNFDELTAKQKKQMIANLKEQMQDAAKRLDFESAANLRDAIIELEGS 665


>gi|229072613|ref|ZP_04205815.1| UvrABC system protein B [Bacillus cereus F65185]
 gi|228710589|gb|EEL62562.1| UvrABC system protein B [Bacillus cereus F65185]
          Length = 658

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYFPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  +++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ETETYEATPSKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|317124799|ref|YP_004098911.1| excinuclease ABC subunit B [Intrasporangium calvum DSM 43043]
 gi|315588887|gb|ADU48184.1| Excinuclease ABC subunit B [Intrasporangium calvum DSM 43043]
          Length = 707

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/690 (50%), Positives = 479/690 (69%), Gaps = 33/690 (4%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           + +  FQ+ ++Y PSGDQP AI +L + I + E+  +LLG TG+GK+ T A +IE +QRP
Sbjct: 9   RTVAPFQVISEYQPSGDQPRAIDELTRRIRAGEQDVVLLGATGTGKSATTAWLIEQVQRP 68

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS+N+++
Sbjct: 69  TLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSVNDEV 128

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           +R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   + ++K+G+ V++  LL   V+ 
Sbjct: 129 ERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMARIKVGEEVDRDSLLRRFVEM 188

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D+   RGTFRV GD++EI P + E++A R+  FG++IE I   +P+TG+ +   +
Sbjct: 189 QYTRNDLAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIERIYTLHPVTGEVVHEEQ 247

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  SHYV     +  A++ I+ EL+ +L   EK+G+LLEAQRL  R  YD+EM+  
Sbjct: 248 EMYVFPASHYVAGPERMERAIRGIELELEDQLASFEKQGKLLEAQRLRMRTAYDIEMMRQ 307

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR++ GR PG  P  L +Y P+D LL +DESH T+PQI  MY GD  RK 
Sbjct: 308 VGFCSGIENYSRHIDGRGPGSAPNCLIDYFPDDFLLVIDESHQTVPQIGAMYEGDMSRKR 367

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC--QGIIVEQIIRPTG 553
            L E+GFRLPS MDNRPL++EE+      T+ +SATPG +EL +    G  VEQIIRPTG
Sbjct: 368 MLVEHGFRLPSAMDNRPLKWEEFLERIGQTVYLSATPGEYELAKSGRSGPPVEQIIRPTG 427

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP V ++  + Q++D+ DEI +   +  R+L+T LTK+MAEDLT+YL ++ IRVRY+H
Sbjct: 428 LIDPEVVLKPTKGQIDDLMDEIRIRVDRNERVLVTTLTKKMAEDLTDYLLDKGIRVRYLH 487

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ TL R+E++R+LR G FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLIQ
Sbjct: 488 SDIDTLRRVELLRELRQGVFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSARSLIQ 547

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAARNV+ +V +YAD IT S+Q A+DET RRR+KQL +N++  I+PQ +++KI ++ 
Sbjct: 548 TIGRAARNVSGQVHMYADKITPSMQEALDETNRRRDKQLAYNREKGIDPQPLRKKIADIT 607

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAH-----------------------------L 764
           D +  EDA T  + I + ++    K G A                              +
Sbjct: 608 DLLQREDADTQEL-IGSGRMQSRGKSGAARGAVAADVGVSSGRRGERPADLAAADLAGLI 666

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + + +QMH AA  L+FE AAR+RDE+  LK
Sbjct: 667 QEMTEQMHQAAAELHFELAARLRDEVSDLK 696


>gi|86607183|ref|YP_475946.1| excinuclease ABC subunit B [Synechococcus sp. JA-3-3Ab]
 gi|123505027|sp|Q2JRR3|UVRB_SYNJA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|86555725|gb|ABD00683.1| excinuclease ABC, B subunit [Synechococcus sp. JA-3-3Ab]
          Length = 695

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/688 (53%), Positives = 469/688 (68%), Gaps = 40/688 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AIA L+K I    + Q LLG TG+GKTFT+A  I+ + RP +VMA
Sbjct: 4   FQLVSSYQPTGDQPKAIAGLVKSILEGHRFQTLLGATGTGKTFTIAHTIQQVGRPTLVMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +  FP+NAVEYF+SYYDYYQPEAYVP TDTYI K SSIN++ID +RH
Sbjct: 64  PNKTLAAQLCNELRELFPYNAVEYFISYYDYYQPEAYVPSTDTYIAKSSSINDEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+SVSCIYG+G  E Y +  +  ++G  + Q+E+L  L   QY+R 
Sbjct: 124 SATRSLFERRDVIVVASVSCIYGLGMPEEYLKASIPFQVGQEINQREVLRDLAGIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +EI P++ ED   R+  FG++IE I    P+TG+ + ++  +++Y
Sbjct: 184 DLELARGRFRVKGDVLEIVPAY-EDRVIRIEFFGDEIEAIRLIDPVTGEILTSLSALRVY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP   L  A+  I++EL+ +L    K+G+LLEAQRLEQR  YDLEML   G C 
Sbjct: 243 PARHFVTPEAQLQQAILNIEQELEEQLAFFRKQGKLLEAQRLEQRTRYDLEMLREVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYI-PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
            IENYSR+LTGR  GEPP  L +Y    D LL VDESHVT+PQI GMY GD  RK  L +
Sbjct: 303 GIENYSRHLTGRKEGEPPACLVDYFKANDWLLVVDESHVTVPQIRGMYNGDRARKQVLVD 362

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC------------------- 540
           +GFRLPS +DNRPL+ EE+       + VSATPG+WELEQ                    
Sbjct: 363 HGFRLPSALDNRPLKAEEFWAKVHQCVFVSATPGNWELEQSGAQFETVVENGKTLKFYVP 422

Query: 541 -QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL---AAQQGL--RILLTVLTKRM 594
             G ++EQ+IRPTG+VDP V +R    QVED+  EI L    +QQGL  R+++T LTKRM
Sbjct: 423 GTGRVIEQVIRPTGVVDPEVHVRPTAGQVEDLLGEIYLRLERSQQGLPERVIVTTLTKRM 482

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AEDLTEYL ER IRVRY+HSE+ ++ERIEI++D R G FDVLVG+NLLREGLD+PE  LV
Sbjct: 483 AEDLTEYLQERGIRVRYLHSEISSIERIEILQDFREGAFDVLVGVNLLREGLDLPEVSLV 542

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
           AILDADKEGFLR++ SLIQ IGRAARNV   V++YADT+T S+  AI ET RRRE QL++
Sbjct: 543 AILDADKEGFLRAERSLIQMIGRAARNVRGTVVMYADTLTGSMARAIAETQRRREIQLQY 602

Query: 715 NKKHNINPQSVKEKIMEVIDPILLEDAATTNISID-----AQQLSLSKKK---GKAHLKS 766
           N++HNI P+ + +K    I   L       +  ++     A ++ LS+     G+  LK 
Sbjct: 603 NRQHNITPKPIIKKNSNAILSFLAISRKLNSQDLEKAFPVADEIPLSEIPELIGQLELK- 661

Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLK 794
               M  AA NL FEEAA++RD+IK+L+
Sbjct: 662 ----MKAAAKNLEFEEAAQLRDQIKKLR 685


>gi|119488976|ref|ZP_01621911.1| excinuclease ABC subunit B [Lyngbya sp. PCC 8106]
 gi|119454932|gb|EAW36075.1| excinuclease ABC subunit B [Lyngbya sp. PCC 8106]
          Length = 653

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/652 (53%), Positives = 458/652 (70%), Gaps = 14/652 (2%)

Query: 151 GDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLY 210
           GDQP AIA+L+K I +  +   LLG TG+GKTFT+A V+E + RP +V+A NK LAAQL 
Sbjct: 2   GDQPQAIAKLVKSIQAHHQFTTLLGATGTGKTFTIAAVVEKIGRPTLVLAHNKTLAAQLC 61

Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270
           +E + FFP+NAVEYF+SYYDYYQPEAY+P TDTYIEK +SIN++ID +RHSATRSL ER 
Sbjct: 62  NELREFFPNNAVEYFISYYDYYQPEAYIPVTDTYIEKTASINDEIDMLRHSATRSLFERR 121

Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
           D IVV+S+SCIYG+G    Y +  + L++G+ + Q++LL  L   QY R D  + RG FR
Sbjct: 122 DVIVVASISCIYGLGIPTEYLKAAIPLRVGEELNQRQLLRDLASVQYTRNDTELTRGRFR 181

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD +EI P++ ED   RV  FG++++ I    P+TG+ +++VE + +Y   H+VTP+ 
Sbjct: 182 LKGDVLEIGPAY-EDRIIRVEFFGDEVDAIRYIDPVTGEVLQSVEALNVYPARHFVTPQD 240

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
            L  A   I+ ELK ++  LE  G+LLEAQRL QR  YDLEML   G C  +ENYSR+L 
Sbjct: 241 RLEVACNDIEAELKQQVQALENAGKLLEAQRLNQRTRYDLEMLREVGYCNGVENYSRHLA 300

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
           GR  GE P  L +Y P+D LL +DESHVTIPQI GMY GD  RK  L E+GFRLPS  DN
Sbjct: 301 GRQAGESPECLIDYFPKDWLLVIDESHVTIPQIRGMYNGDQSRKRVLVEHGFRLPSAADN 360

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
           RPL+ EE+       I VSATPG WE+EQ QG +VEQIIRPTG+VDP + +R    Q++D
Sbjct: 361 RPLKAEEFWGKMNQCIFVSATPGDWEIEQSQGEVVEQIIRPTGVVDPEIFVRPTEGQIDD 420

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           ++ EI    ++  R+L+T LTKRMAEDLTEYL +R ++VRY+HSE+K+++RIEIIRDL+ 
Sbjct: 421 LFGEIQERVERDERVLITTLTKRMAEDLTEYLQDRGVKVRYLHSEIKSIQRIEIIRDLQQ 480

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G FDVL+G+NLLREGLD+P+  LV ILDADKEGFLR+  SLIQTIGRAARN+  + ILYA
Sbjct: 481 GVFDVLIGVNLLREGLDLPQVSLVVILDADKEGFLRATRSLIQTIGRAARNIRGQAILYA 540

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
           D +T S+  AIDET RRR  QLE+N+KH I PQ++ +K    I      D    +  ++A
Sbjct: 541 DNLTDSMIKAIDETERRRTIQLEYNEKHGIIPQTIVKKFSNAI-----LDFLDVSRRLNA 595

Query: 751 QQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           QQL         LS ++    +  L +QM  AA  L FEEAA++RD IK L+
Sbjct: 596 QQLEEVYEQVDELSLEEIPNFIGQLEQQMKEAAKKLEFEEAAKLRDRIKLLR 647


>gi|163841033|ref|YP_001625437.1| excinuclease ABC subunit B [Renibacterium salmoninarum ATCC 33209]
 gi|189037989|sp|A9WT85|UVRB_RENSM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|162954509|gb|ABY24024.1| excinuclease ABC, B subunit [Renibacterium salmoninarum ATCC 33209]
          Length = 693

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/673 (52%), Positives = 475/673 (70%), Gaps = 24/673 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQPAAIA L + I++ EK  +LLG TG+GK+ T A +IE +QRP +VM 
Sbjct: 14  FEVISEYQPAGDQPAAIADLTERINNGEKDVVLLGATGTGKSATTAWLIEQVQRPTLVMV 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SS+NE+++R+R+
Sbjct: 74  QNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSVNEEVERLRY 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D IVV++VSCIYG+G+ E Y   +V LK GD V++ +LL   V  QY R 
Sbjct: 134 SATNSLLTRRDVIVVATVSCIYGLGTPEEYVAGMVTLKQGDRVDRDQLLRQFVGIQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E+ A R+  FG++IE+I   +PLTG+ IR    + ++
Sbjct: 194 DIDFHRGTFRVRGDTVEITPMY-EEQALRIEFFGDEIEKIFTLHPLTGEIIREENEMYVF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I++EL +RL ELE + +LLEAQRL  R TYDLEM++  G C 
Sbjct: 253 PASHYVAGPERMAKAITRIEDELAVRLKELEGQNKLLEAQRLRMRTTYDLEMMQQMGFCN 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR+ G  P  L +Y P+D LL +DESHVT+PQI  MY GD  RK TL ++
Sbjct: 313 GIENYSRHIDGRDSGSAPSCLIDYFPDDFLLVIDESHVTLPQIGAMYEGDMSRKRTLVDH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+++E+      T+ +SATPG +E+ +  G +V+QIIRPTGL+DP V 
Sbjct: 373 GFRLPSAMDNRPLKWDEFLERVGQTVYLSATPGKYEMAKADG-VVQQIIRPTGLIDPEVI 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+  + Q++D+  EI    ++  R+L+T LTKRMAEDLTEYL    ++V+Y+HS+V TL 
Sbjct: 432 IKPTKGQIDDLLGEIRTRVERDERVLVTTLTKRMAEDLTEYLLGHGVKVQYLHSDVDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LRLG FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 492 RVELLRELRLGVFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSATSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+  AIDET RRR  Q+ +N +H ++P  ++++I ++ D +  ED
Sbjct: 552 NVSGEVHMYADKITDSMAKAIDETNRRRAIQVAYNTEHGVDPTPLRKRIADITDSLARED 611

Query: 741 AATTNISIDAQQLSLSKKKGKAH-------------------LKSLRKQMHLAADNLNFE 781
           A T ++   A +    + +GKA                    ++ L  QMH AA  L FE
Sbjct: 612 ADTKSLLESAGK---GRSRGKAPVPVRHDGLAAVPAEDLVDLIEQLTAQMHSAAGELQFE 668

Query: 782 EAARIRDEIKRLK 794
            AAR+RDE+  LK
Sbjct: 669 LAARLRDEVGDLK 681


>gi|206970247|ref|ZP_03231200.1| excinuclease ABC, B subunit [Bacillus cereus AH1134]
 gi|206734824|gb|EDZ51993.1| excinuclease ABC, B subunit [Bacillus cereus AH1134]
          Length = 658

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 478/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFGEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ETETYEAAPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|228955404|ref|ZP_04117409.1| UvrABC system protein B [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228804196|gb|EEM50810.1| UvrABC system protein B [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 658

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 480/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            A T  +  +++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 EAETYEATPSKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|229082372|ref|ZP_04214835.1| UvrABC system protein B [Bacillus cereus Rock4-2]
 gi|228700804|gb|EEL53327.1| UvrABC system protein B [Bacillus cereus Rock4-2]
          Length = 658

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  +++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ETETYEATPSKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|75759008|ref|ZP_00739116.1| Excinuclease ABC subunit B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493474|gb|EAO56582.1| Excinuclease ABC subunit B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 658

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 478/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G    + +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEKYRELVVSLRVGMEKGRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|309811766|ref|ZP_07705540.1| excinuclease ABC, B subunit [Dermacoccus sp. Ellin185]
 gi|308434187|gb|EFP58045.1| excinuclease ABC, B subunit [Dermacoccus sp. Ellin185]
          Length = 701

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/689 (50%), Positives = 477/689 (69%), Gaps = 27/689 (3%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + +  + +   ++++++ P+GDQP AIA+L K + + E+  +LLG TG+GK+ T A +IE
Sbjct: 4   VTDLQRSVAPIKVESEFEPAGDQPKAIAELSKRVKAGEQDIVLLGATGTGKSATTAWLIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +V+APNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAYVP+TDTYIEK+SS
Sbjct: 64  QVQRPTLVLAPNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   + +LK+G  + + ELL 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMARLKVGQEINRDELLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V+ QY R D+   RGTFRV GD++EI P + E++A R+  FG++I+ +   +PLTG+ 
Sbjct: 184 RFVEMQYTRNDLAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRLYTLHPLTGEI 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +     + ++  +HYV     +  A+  I+ EL  +L   E EG++LEAQRL  R TYD+
Sbjct: 243 VNEESEMYVFPATHYVAGPERMERAIAGIEVELGDQLKRFEAEGKMLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   GSC  IENYSR++ GR PG  P TL +Y PED LL +DESH T+PQI  MY GD
Sbjct: 303 EMMRQVGSCAGIENYSRHMDGRGPGTAPNTLLDYFPEDFLLVIDESHQTVPQIGAMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS MDNRPL++EE+      T+ +SATPG +E+ +  G  VEQ+IR
Sbjct: 363 MSRKRTLVDHGFRLPSAMDNRPLKWEEFLEHIGQTVYLSATPGDYEMSKSDG-YVEQVIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++  + Q++D+  EI     +  R+L+T LTK+MAEDLT+YL ++ +RVR
Sbjct: 422 PTGLVDPEIVLKPTKGQIDDLLGEIRTRTDKNERVLVTTLTKKMAEDLTDYLLDKGVRVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSEV TL R+E++R+LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  S
Sbjct: 482 YLHSEVDTLRRVELLRELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD +T S+Q AIDET+RRRE Q+ +N +  I+PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADKVTPSMQEAIDETSRRRELQIAYNTEKGIDPQPLRKKIA 601

Query: 731 EVIDPILLEDAATTNI-------------------------SIDAQQLSLSKKKGKAHLK 765
           ++ D +  E A T  +                         +  A++ + S       ++
Sbjct: 602 DITDMLQRESADTDALLGSGRSMSRGKGRGGSGAASADANVAAGAKREASSAADLAGLIQ 661

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            L+ QM  AA  L FE AAR+RDE++ LK
Sbjct: 662 ELQAQMSEAASELQFELAARLRDELRDLK 690


>gi|159038906|ref|YP_001538159.1| excinuclease ABC subunit B [Salinispora arenicola CNS-205]
 gi|157917741|gb|ABV99168.1| excinuclease ABC, B subunit [Salinispora arenicola CNS-205]
          Length = 700

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/687 (51%), Positives = 470/687 (68%), Gaps = 27/687 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +D+ P+GDQPAAI  L + +   ++  +LLG TG+GK+ T A +IE +QRP +V+A
Sbjct: 12  FQVVSDFQPAGDQPAAIDDLERRVRRGDRHTVLLGATGTGKSATTAWLIERLQRPTLVLA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK L AQL  EF    P+NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SSINE+++R+RH
Sbjct: 72  PNKTLCAQLAKEFSELLPNNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSINEEVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV++VS IYG+G+ E Y    V++  G  +++ +LL  LV  QY R 
Sbjct: 132 SATMSLLTRRDVVVVATVSAIYGLGTPEEYLDRAVRVATGQELDRDQLLRRLVDIQYTRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P++ E++A R+ +FG+++E +    PLTG  +R V+ + I+
Sbjct: 192 DMAFQRGTFRVRGDTLEIIPAY-EELAVRIELFGDEVERLYYLNPLTGDVVREVDHLLIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY      +  A++ I+ EL  RL ELE+   LLEAQRL  R TYD+EM+   G C 
Sbjct: 251 PATHYAAGPARMERAIRDIETELGERLAELERRSSLLEAQRLRMRTTYDIEMMRQVGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR PG PP  L +Y P+D L  VDESHVTIPQ+ GMY GD  RK  L ++
Sbjct: 311 GIENYSMHIDGRLPGSPPHCLLDYFPDDFLTVVDESHVTIPQVGGMYEGDASRKRMLIDH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRF+E+       + +SATPGSWELE  QG  VEQ+IRPTGLVDP V 
Sbjct: 371 GFRLPSAADNRPLRFDEFLERVGQMVFLSATPGSWELEHAQGEYVEQVIRPTGLVDPEVV 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI L  ++  R+L+T LTK+MAEDL++YL E  IRVRY+HSEV TL 
Sbjct: 431 VKPTKGQIDDLMHEIKLRTERDERVLVTTLTKKMAEDLSDYLLENGIRVRYLHSEVDTLR 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 491 RVELLRELRKGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGRSLIQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+  A+ ET RRR KQ+ HN+ H I+P+ +++KI +++D I  E 
Sbjct: 551 NVSGEVHMYADKITPSMAEAVGETNRRRAKQIAHNEAHGISPEPLRKKIHDILDDIYREA 610

Query: 741 AAT-TNISIDAQQLSLSK-----------------KKGKAH------LKSLRKQMHLAAD 776
             T T +    +QLS  K                 ++G A       ++ L  QM  AA 
Sbjct: 611 EETETRVGGAVRQLSRGKAPVKETRSRSRAGAGPAREGMARAELAELIQELNGQMLAAAR 670

Query: 777 NLNFEEAARIRDEIKRLKSSPYFQGLD 803
            L FE AARIRDEI  LK     +G+D
Sbjct: 671 ELQFELAARIRDEISELKKE--LRGMD 695


>gi|295100025|emb|CBK89114.1| Excinuclease ABC subunit B [Eubacterium cylindroides T2-87]
          Length = 655

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/655 (53%), Positives = 462/655 (70%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AI +L++G+   +K Q+LLG TG+GKTFT++ VI  + RP +V A
Sbjct: 4   FELVSDYKPMGDQPTAIKELVQGLKDHKKYQVLLGATGTGKTFTVSNVIAQVNRPTLVFA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+N VEYFVSY+DYYQPEAY+P+TDTYI+K +  NE++D +R 
Sbjct: 64  HNKTLAGQLYSEFKEFFPNNRVEYFVSYFDYYQPEAYLPKTDTYIDKNTKTNEELDMLRM 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +A  S+LER D I+V+SV+ IYG  + E Y  MI  L+ G ++++ EL+ +LV QQYKR 
Sbjct: 124 AAVNSVLERRDTIIVASVASIYGASNPEQYRHMIFTLRTGQTIDRNELMLALVHQQYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D   +RGTFRV GD IEI P H +    R+ +F ++IE I E  P+TG   +      IY
Sbjct: 184 DTDPLRGTFRVRGDVIEITPGHTDRYLIRIELFDDEIERICEVDPVTGHVNQAYHLYIIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y T    +  A   I+EEL+ RL   +K G+ LE +RLEQR  YD+E L+  G C 
Sbjct: 244 PANGYATSMDVIKRAAASIEEELEDRLDYFDKMGKPLEKERLEQRCRYDIEALKEFGVCP 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P TLF+Y P+D LL VDESHV++PQI GMY GD  RK  L EY
Sbjct: 304 GIENYSRHIDGRKPGERPYTLFDYFPDDFLLVVDESHVSLPQIRGMYNGDRARKEVLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  + P+ I VSATPG +ELE+  G ++EQIIRPTGL+DP VE
Sbjct: 364 GFRLPSALDNRPLRFEEFESIIPSAIFVSATPGDYELEKVDGHVIEQIIRPTGLLDPEVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ DEI +  ++  R L+T LT RMAEDLT YL   +++V ++H EV T+E
Sbjct: 424 VRPIEGQIDDLVDEIKMRIKKNQRTLITTLTVRMAEDLTSYLKNMDLKVAWLHHEVTTIE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EII DLR GK+DVLVGINLLREGLDIPE  L+AILDADKEGFLRSK SLIQ IGRAAR
Sbjct: 484 RTEIIHDLRQGKYDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSKRSLIQIIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YADTIT+S+Q AIDET RRR  Q+E+NK+HNI P+++ + I +V+     ++
Sbjct: 544 NAEGKVIMYADTITESMQYAIDETNRRRSIQIEYNKEHNIVPKTIIKPIHDVVRSKETKE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            A   +     +  +  K+ +  LK++ ++M  AA  L+FE AA++RD +  LK+
Sbjct: 604 MAAKYLK----KKKVGAKQKEVMLKNIEQEMKEAARTLDFERAAQLRDILLELKA 654


>gi|116511361|ref|YP_808577.1| excinuclease ABC subunit B [Lactococcus lactis subsp. cremoris
           SK11]
 gi|123320587|sp|Q031G7|UVRB_LACLS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|116107015|gb|ABJ72155.1| Excinuclease ABC subunit B [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 692

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/684 (51%), Positives = 476/684 (69%), Gaps = 33/684 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQ  AI++L++ I + EK Q+L G TG+GKT+TM++VI    +P +VMA
Sbjct: 11  FELVSKYDPAGDQGQAISELVENIENGEKAQILRGATGTGKTYTMSQVIAQTGKPTLVMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 71  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCIYG+GS + Y   +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 131 SATSSLLERNDVIVVASVSCIYGLGSPKEYQDSVVSLRPGQEISRDQLLNDLVGIQFERN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 191 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRIREIEVLTGQVLGEVDHLAIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  ++  I+ EL+ +L     EG+LLEAQRLEQR  YD+EML   G C 
Sbjct: 251 PATHFMTNDDRMEESIAKIEAELEAQLKVFRSEGKLLEAQRLEQRTNYDIEMLREMGYCN 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR  GEPP TL ++ P+D ++ +DESH+T+ Q+ GMY GD  RK  L  Y
Sbjct: 311 GVENYSRHMDGREEGEPPYTLLDFFPDDFMIMIDESHMTMGQVKGMYNGDRARKEMLCNY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +E+EQ    IVEQIIRPTGL+DP VE
Sbjct: 371 GFRLPSALDNRPLKREEFESHVHQIVYVSATPGDYEMEQTD-TIVEQIIRPTGLLDPVVE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+  A++  R+ +T LTK+M+EDLT Y  E  I+V+YMHS++KTLE
Sbjct: 430 VRPMMGQIDDLVGEIHKRAEKNERVFVTTLTKKMSEDLTAYFKEMGIKVKYMHSDIKTLE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 490 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 549

Query: 681 NVNSKVILYADT-----------------------------ITKSIQLAIDETTRRREKQ 711
           N    VILY+D                              IT+S++ A+DET RRR+ Q
Sbjct: 550 NSEGHVILYSDMAKALDENDPADKEILDSGYYTEYEGQKYKITRSMKHAMDETARRRDIQ 609

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771
           + +N++H I PQ++K++I ++I      D+      +DA   +++KK+ KA +K L K+M
Sbjct: 610 MAYNEEHGITPQTIKKEIRDLIAITKKTDSGELE-EVDAS--AMNKKERKALVKKLEKEM 666

Query: 772 HLAADNLNFEEAARIRDEIKRLKS 795
             AA  L+FE AA++RD +  L++
Sbjct: 667 QQAAAALDFEGAAQLRDMVLELRA 690


>gi|125623401|ref|YP_001031884.1| excinuclease ABC subunit B [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|189037980|sp|A2RIP3|UVRB_LACLM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|124492209|emb|CAL97138.1| UvrABC system protein B [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070148|gb|ADJ59548.1| excinuclease ABC subunit B [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 692

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/684 (51%), Positives = 476/684 (69%), Gaps = 33/684 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQ  AI++L++ I + EK Q+L G TG+GKT+TM++VI    +P +VMA
Sbjct: 11  FELVSKYDPAGDQGQAISELVENIENGEKAQILRGATGTGKTYTMSQVIAQTGKPTLVMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 71  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCIYG+GS + Y   +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 131 SATSSLLERNDVIVVASVSCIYGLGSPKEYQDSVVSLRPGQEISRDQLLNDLVGIQFERN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 191 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRIREIEVLTGQVLGEVDHLAIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  ++  I+ EL+ +L     EG+LLEAQRLEQR  YD+EML   G C 
Sbjct: 251 PATHFMTNDDRMEESIAKIEAELEAQLKVFRSEGKLLEAQRLEQRTNYDIEMLREMGYCN 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR  GEPP TL ++ P+D ++ +DESH+T+ Q+ GMY GD  RK  L  Y
Sbjct: 311 GVENYSRHMDGREEGEPPYTLLDFFPDDFMIMIDESHMTMGQVKGMYNGDRARKEMLCNY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +E+EQ    IVEQIIRPTGL+DP VE
Sbjct: 371 GFRLPSALDNRPLKREEFESHVHQIVYVSATPGDYEMEQTD-TIVEQIIRPTGLLDPVVE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+  A++  R+ +T LTK+M+EDLT Y  E  I+V+YMHS++KTLE
Sbjct: 430 VRPMMGQIDDLVGEIHKRAEKNERVFVTTLTKKMSEDLTAYFKEMGIKVKYMHSDIKTLE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 490 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 549

Query: 681 NVNSKVILYADT-----------------------------ITKSIQLAIDETTRRREKQ 711
           N    VILY+D                              IT+S++ A+DET RRR+ Q
Sbjct: 550 NSEGHVILYSDMAKALDENDPADKEILDSGYYTEYEGKKYKITRSMKHAMDETARRRDIQ 609

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771
           + +N++H I PQ++K++I ++I      D+      +DA   +++KK+ KA +K L K+M
Sbjct: 610 MAYNEEHGITPQTIKKEIRDLIAITKKTDSGELE-EVDAS--AMNKKERKALVKKLEKEM 666

Query: 772 HLAADNLNFEEAARIRDEIKRLKS 795
             AA  L+FE AA++RD +  L++
Sbjct: 667 QQAAAALDFEGAAQLRDMVLELRA 690


>gi|19703569|ref|NP_603131.1| excinuclease ABC subunit B [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|22257069|sp|Q8RGR2|UVRB_FUSNN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|19713669|gb|AAL94430.1| Excinuclease ABC subunit B [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 663

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/653 (52%), Positives = 477/653 (73%), Gaps = 4/653 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +DY P+GDQP AI  ++K I +  K Q+LLGVTGSGKTFT+A VIE +QRP+++
Sbjct: 4   NLFKIHSDYKPTGDQPTAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPSLI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID++
Sbjct: 64  IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     + +KEL+  L+  +Y 
Sbjct: 124 RNAATAALIHRRDVIIVASVSSIYGLGSPDTYRRMTIPIDKQTGISRKELMKRLIALRYD 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377
           R D+   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQK++ N+E I
Sbjct: 184 RNDVAFERGQFRIKGDVIDIYPSYMNN-GYRLEYWGDDLEEISEINTLTGQKVKKNLERI 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + Y+T     +  ++ IK++LK+ + + E + +LLEAQRL QR  YDLEM+   G
Sbjct: 243 VIYPATQYLTADDDKDRIIQEIKDDLKVEVKKFEDDKKLLEAQRLRQRTEYDLEMITEIG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSRYL G+NPG+ P TLFEY P+D LLF+DESH+T+PQ+ GMY GD  RK +L
Sbjct: 303 YCKGIENYSRYLAGKNPGDTPDTLFEYFPKDFLLFIDESHITVPQVRGMYNGDRARKESL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E GFRL + +DNRPLRFEE+      T+ +SATPG +E+E     I EQ+IRPTG+VDP
Sbjct: 363 VENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNHIAEQLIRPTGIVDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR  + QV+D+ DEI   A +  R+L+T LTK++AE+LTEY  E  ++V+YMHS++ 
Sbjct: 423 EIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTIGR
Sbjct: 483 TLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  ++I+P+S+ ++I E  D I 
Sbjct: 543 AARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYNHIDPKSIIKEIAE--DLIN 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           L+         + +++  +K   +  +  L K++    + L+FE+A  +RDE+
Sbjct: 601 LDYGIEEKKFENDKKVFRNKTDIEKEITKLEKKIKKLVEELDFEQAIILRDEM 653


>gi|228999910|ref|ZP_04159482.1| UvrABC system protein B [Bacillus mycoides Rock3-17]
 gi|229007463|ref|ZP_04165060.1| UvrABC system protein B [Bacillus mycoides Rock1-4]
 gi|228753851|gb|EEM03292.1| UvrABC system protein B [Bacillus mycoides Rock1-4]
 gi|228759852|gb|EEM08826.1| UvrABC system protein B [Bacillus mycoides Rock3-17]
          Length = 658

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/655 (53%), Positives = 477/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI QL+ GI++ +K Q+LLG TG+GKTFT++ VI+ +++P +VMA
Sbjct: 5   FEIVSEYSPQGDQPRAIKQLVAGINNGKKHQVLLGATGTGKTFTISNVIKEVKKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   E + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHVT+PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGSTPYTLIDYFPKDFLIVMDESHVTVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSAMDNRPLMFEEFEEKTNQVVYVSATPGPYELELTPE-VVEQIIRPTGLLDPQID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+    +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLLGEIHDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD IT+S+ +AI+ET RRR+KQ  +N++H I P+++++++ +VI       
Sbjct: 544 NEHGHVIMYADRITRSMGIAIEETKRRRQKQEAYNEEHGITPKTIQKEVRDVIRATTA-- 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A  T +        ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 602 AEETEVYEAGPAKKMTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|332707351|ref|ZP_08427401.1| excinuclease ABC subunit B [Lyngbya majuscula 3L]
 gi|332353842|gb|EGJ33332.1| excinuclease ABC subunit B [Lyngbya majuscula 3L]
          Length = 714

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/665 (53%), Positives = 467/665 (70%), Gaps = 18/665 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F ++  + P+GDQP AI+QL   + +  ++Q LLG TG+GKTF++A VIE + +P +++
Sbjct: 27  LFNLEAPFQPTGDQPQAISQLTTYLKAGNRIQTLLGATGTGKTFSVASVIEKVGKPTLLL 86

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQL +E + FFPHNAVEYF+SYYDYYQPEAY+P TDTYIEK +SIN++ID +R
Sbjct: 87  AHNKTLAAQLCNELRGFFPHNAVEYFISYYDYYQPEAYIPVTDTYIEKTASINDEIDMLR 146

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSATRSL ER D IVV+S+SCIYG+G    Y +  + L++   V+Q++LL  LV  QY R
Sbjct: 147 HSATRSLFERRDVIVVASISCIYGLGIPSEYLKASIPLRVNTEVDQRQLLRDLVSVQYSR 206

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG   ++VE + I
Sbjct: 207 NDLELGRGRFRVKGDVLEIGPAY-EDRIIRVEFFGDEIDAIHYVDPVTGGIFQSVEGVNI 265

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y   H+VTP   L  A   IK EL+ RL +LE+ G LLEAQRLEQR  YDLEML   G C
Sbjct: 266 YPARHFVTPDERLEEACNAIKAELEERLAQLEQAGNLLEAQRLEQRTRYDLEMLLEIGYC 325

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +ENYSR+L GR  GEPP  L +Y PED LL VDESHVT+PQI GMY GD  RK  L +
Sbjct: 326 NGVENYSRHLAGRKLGEPPECLIDYFPEDWLLVVDESHVTVPQIRGMYNGDRARKQVLID 385

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS  DNRPL+ EE+       I VSATPG WE+E+ QG +VEQIIRPTG++DP +
Sbjct: 386 HGFRLPSAADNRPLKAEEFWAKVNQCIFVSATPGDWEMEESQGRVVEQIIRPTGVLDPEI 445

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R    QV+D+  EI        R+L+T LTKRMAEDLTEYL ER+IR+ Y+HS++ ++
Sbjct: 446 FVRPTVAQVDDLLAEIKQRVDCQERVLVTTLTKRMAEDLTEYLQERDIRISYLHSDINSI 505

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEI++ LR G+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAA
Sbjct: 506 ERIEILQGLRQGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAA 565

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           R+V  + I+YADT+TKS++ AIDET RRR+ Q E+N K+NI PQ +++      +PIL  
Sbjct: 566 RHVRGQAIMYADTLTKSMRKAIDETNRRRKIQSEYNIKNNIIPQPIRKTAN---NPIL-- 620

Query: 740 DAATTNIS--IDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                ++S  ++AQQ          +  +K    +  L +QM  AA  L FE AA++RD 
Sbjct: 621 --TFLDVSRRLNAQQFESVFEQVDDVPLEKIPELINQLEEQMKEAAKTLEFETAAKLRDR 678

Query: 790 IKRLK 794
           IK+L+
Sbjct: 679 IKQLR 683


>gi|261350556|ref|ZP_05975973.1| excinuclease ABC subunit B [Methanobrevibacter smithii DSM 2374]
 gi|288861339|gb|EFC93637.1| excinuclease ABC subunit B [Methanobrevibacter smithii DSM 2374]
          Length = 655

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/657 (54%), Positives = 465/657 (70%), Gaps = 13/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI  L+ GI+  EK Q LLGVTGSGKTFTMA VIE +Q+P +V++
Sbjct: 4   FKLNSPYKPLGDQPKAINSLVDGINKGEKEQTLLGVTGSGKTFTMANVIEKVQKPTLVIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+I+KESS+NE+ID MRH
Sbjct: 64  HNKTLAAQLYEEFKEFFPDNAVEYFVSYYDYYQPEAYVPRTDTFIDKESSVNEEIDIMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLL R+D IVVSSVSCIYG+GS E Y +    + +GD+ ++ +++  LV  QY+R 
Sbjct: 124 SATQSLLSRDDVIVVSSVSCIYGVGSPEDYGEFAFGIAVGDNYDRSDIIRKLVFMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD IEI P H      RV +FG++I+ IS    +TG+K  +++   I+
Sbjct: 184 DIEFARGHFRVRGDVIEINPVH-GTPPVRVELFGDEIDAISLIDKVTGKKTESLKRYMIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V  +  ++TA++ I +EL  RL E     +LLEAQRLEQR  +D+EML+  G C 
Sbjct: 243 PAKHFVVGQDKMDTAIRNISDELDERLNEFNLSNKLLEAQRLEQRTRFDIEMLQEMGYCP 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS +L+GR  GE P +L +Y PED L  +DESHVT+PQI GMY GD  RK TL E+
Sbjct: 303 GVENYSMHLSGRKWGEKPYSLLKYFPEDYLTIIDESHVTLPQIRGMYNGDRARKETLVEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPLRF+E+       I VSATPG++EL +    IVEQIIRPTGLVDP V 
Sbjct: 363 GFRLPSAKENRPLRFDEFESSINQIIYVSATPGAYELSRSSN-IVEQIIRPTGLVDPEVI 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + QVED+  E+   A++  R+L+T LTK+MAEDLT+Y  +  ++VRYMHSE+ TLE
Sbjct: 422 IRPVKGQVEDLLGEVKKRAKKDERVLVTTLTKKMAEDLTDYYAKIGVKVRYMHSEIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI+I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR++TSLIQTIGRAAR
Sbjct: 482 RIDIVDDLRRGTFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME--VIDPILL 738
           N+N +VI+Y D +T S++ A   T++RR+ Q+++N+KH I P++ K  + +  V++ + +
Sbjct: 542 NINGQVIMYVDEMTDSVKNATAITSKRRKIQIKYNEKHGIVPKTTKRALKDKKVVEDLDI 601

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           E    + I  D  +L +S          L   M  AA  L+FE AA +RD+I  LK 
Sbjct: 602 EGTDISKIPKDELRLLIS---------DLENDMKEAAAKLDFERAASLRDQIATLKG 649


>gi|86608289|ref|YP_477051.1| excinuclease ABC subunit B [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123503229|sp|Q2JN87|UVRB_SYNJB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|86556831|gb|ABD01788.1| excinuclease ABC, B subunit [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 695

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/688 (52%), Positives = 467/688 (67%), Gaps = 40/688 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AIA L+K I    + Q LLG TG+GKTFT+A  I+ + RP +VMA
Sbjct: 4   FQLVSPYQPTGDQPKAIAGLVKSISEGHRFQTLLGATGTGKTFTIAHTIQQVGRPTLVMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E +  FPHNAVEYF+SYYDYYQPEAYVP TDTYI K SSIN++ID +RH
Sbjct: 64  HNKTLAAQLCNELRELFPHNAVEYFISYYDYYQPEAYVPSTDTYIAKSSSINDEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+SVSCIYG+G  E Y +  +  K+G  + Q+++L  L   QY+R 
Sbjct: 124 SATRSLFERRDVIVVASVSCIYGLGMPEEYLKASIPFKVGQEINQRDVLRDLASIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ ++RG FR+ GD +EI P++ ED   R+  FG++IE I    P+TG+ + ++  +++Y
Sbjct: 184 DLELVRGRFRLKGDVLEIVPAY-EDRVIRIEFFGDEIEAIRLIDPVTGEILNSLSALRVY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP   L  A+  I++EL+ +L    KEG+LLEAQRLEQR  YDLEML   G C 
Sbjct: 243 PARHFVTPEAQLERAILNIEQELEEQLALFRKEGKLLEAQRLEQRTRYDLEMLREVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYI-PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
            IENYSR+LTGR  GEPP  L +Y   +D LL VDESHVT+PQI GMY GD  RK  L +
Sbjct: 303 GIENYSRHLTGRKAGEPPACLVDYFKADDWLLVVDESHVTVPQIRGMYNGDRARKQVLVD 362

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ------------------ 541
           +GFRLPS +DNRPL+ EE+       I VSATPG+WELEQ +                  
Sbjct: 363 HGFRLPSALDNRPLKAEEFWAKVHQCIFVSATPGNWELEQSEAQFETRVEDGKTLKFYVQ 422

Query: 542 --GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ-----GLRILLTVLTKRM 594
             G ++EQ+IRPTG+VDP V +R    QV+D+  EI L  ++       R+++T LTKRM
Sbjct: 423 GSGRVIEQVIRPTGVVDPEVHVRPTAGQVDDLLGEIYLRLERSQLGPAERVIVTTLTKRM 482

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AEDLTEYL ER IRVRY+HSE+ ++ERIEI++D R G FDVLVG+NLLREGLD+PE  LV
Sbjct: 483 AEDLTEYLQERGIRVRYLHSEITSIERIEILQDFREGAFDVLVGVNLLREGLDLPEVSLV 542

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
           AILDADKEGFLR++ SLIQ IGRAARNV   V++YADT+T S+  AI ET RRRE QL++
Sbjct: 543 AILDADKEGFLRAERSLIQMIGRAARNVRGMVVMYADTMTSSMARAIAETQRRREIQLQY 602

Query: 715 NKKHNINPQSVKEKIMEVIDPIL-----LEDAATTNISIDAQQLSLSKKK---GKAHLKS 766
           N++HNI P+ + +K    I   L     L D         AQ++ LS+     G+  LK 
Sbjct: 603 NRQHNITPKPIVKKNSNAILSFLAISRKLNDPDLEKAFQAAQEIPLSEIPELIGQLELK- 661

Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLK 794
               M  AA NL FEEAA++RD IK+L+
Sbjct: 662 ----MKEAAKNLEFEEAAQLRDRIKKLR 685


>gi|298244892|ref|ZP_06968698.1| excinuclease ABC, B subunit [Ktedonobacter racemifer DSM 44963]
 gi|297552373|gb|EFH86238.1| excinuclease ABC, B subunit [Ktedonobacter racemifer DSM 44963]
          Length = 662

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/660 (53%), Positives = 483/660 (73%), Gaps = 11/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ + P+GDQP AI +L +GI + ++ Q LLGVTGSGKT+T+AKVIE +Q+P +V+A
Sbjct: 4   FKVESPFEPTGDQPQAIVELAEGIRNNQRFQTLLGVTGSGKTYTVAKVIEQVQKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSE+K FFP+NAVEYFVSYYDYYQPEAY+ RTDTY+EKES +NE+I+++R 
Sbjct: 64  PNKTLAAQLYSEYKEFFPNNAVEYFVSYYDYYQPEAYIARTDTYVEKESMLNEEIEKLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D ++V+SVSCIYG+GS E Y ++++ LK+G+   + ++L  L   QY+R 
Sbjct: 124 SATRSLFERRDVLIVASVSCIYGLGSPEEYGEVVLTLKVGEERRRDKILRHLNSIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D   +RG FRV GD +EIFP++ EDVA RV  FG++IE ++E  PLTG+ +     + IY
Sbjct: 184 DANFVRGRFRVRGDVLEIFPAY-EDVAVRVEFFGDEIERMTEIDPLTGEVLGQRTRLDIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT +  LN ++  I+EEL+ RL ELE EG+LLE  RL+QR  +D+EML  TG C 
Sbjct: 243 PAKHWVTTQERLNKSISLIEEELEQRLEELEAEGKLLEHARLKQRTNFDIEMLRETGICS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L GR  GE P TL +Y+PE+ LL VDESH+++PQ+ GM+ GD  RK  L +Y
Sbjct: 303 GVENYSRHLAGRAAGEQPWTLLDYLPENFLLVVDESHISLPQVRGMFAGDRSRKQILVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       I VSATPG +E E  Q  IVEQIIRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLTFPEFEHKLKQAIFVSATPGPYEYEHSQA-IVEQIIRPTGLIDPEIT 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+  EI +  ++G R+L+T LTK+MAEDL +Y+ E +I+V Y+HSE+ T+E
Sbjct: 422 VRPTRGQIDDLIAEIRIRVEKGQRVLVTTLTKKMAEDLADYMQELSIKVHYLHSEIDTIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 482 RVEILRDLRLGVYDVVVGINLLREGLDLPEVSLVAILDADKEGFLRSEGSLIQTVGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V   VI+YAD +T+S++ AIDET RRR+ Q  +N++HNI P+ +K+++  + +   L+ 
Sbjct: 542 HVEGSVIMYADNVTRSMRRAIDETNRRRKIQEGYNEQHNITPRGIKKEVKTLSE--RLKA 599

Query: 741 AATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD---EIKRL 793
            A      D +  +    + K +    +K L  QM  AA  L FE+A ++RD   EI+RL
Sbjct: 600 MAGPEAGADGKTATAVAGIPKDEALRLIKDLESQMRSAAKQLEFEKAGQLRDQIIEIRRL 659


>gi|328944098|ref|ZP_08241563.1| UvrABC system protein B [Atopobium vaginae DSM 15829]
 gi|327492067|gb|EGF23841.1| UvrABC system protein B [Atopobium vaginae DSM 15829]
          Length = 760

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/718 (49%), Positives = 480/718 (66%), Gaps = 40/718 (5%)

Query: 116 LLKNGKIWTPHRSWSIN----NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKV 170
           L+  G++ + +  +        HSK    FQ+  D+ P GDQP AI  L KG+   + + 
Sbjct: 12  LILKGRMMSAYNHFGAELVRFGHSKQQQPFQVVADFAPKGDQPRAINALTKGVMQDKLRY 71

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           Q LLGVTGSGKTFTMA +IE  Q+  +++ PNK LAAQ+ SE K  FPHNAV YFVSYYD
Sbjct: 72  QTLLGVTGSGKTFTMANLIEQTQKTTLIIEPNKTLAAQVASEMKTLFPHNAVVYFVSYYD 131

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
           YYQPEAY+P+TDTYIEK+SSINE+++++RH  T SLL R D IVV+SVSCIYGIGS + Y
Sbjct: 132 YYQPEAYIPQTDTYIEKDSSINEEVEKLRHQTTSSLLSRRDVIVVASVSCIYGIGSPQDY 191

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           + +   +     +E+ + + SL+  QY R D+ +IRGTFRV GD +++F  + E    RV
Sbjct: 192 AGLAPTIDKNTPLERDDFIRSLIDIQYDRNDVDLIRGTFRVRGDCVDVFTPYGEH-PIRV 250

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
           S FG++IE I+EF  +TG  +   + + I+  +HYV+ RP +N A+  I++EL+ R+ EL
Sbjct: 251 SFFGDEIEMIAEFDEVTGDTLSQYDALPIWPATHYVSARPKINHAILTIRDELEARVQEL 310

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
           +    LLEAQRL+QR +YDLEMLET G C  IENYSR+L GR PGE P TL +Y PED L
Sbjct: 311 KAHNMLLEAQRLQQRCSYDLEMLETMGFCSGIENYSRHLDGRKPGEAPYTLIDYFPEDML 370

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
             +DESHV++PQI GMY GD  RK TL ++GFRLP  +DNRPLR++E+    P  + VSA
Sbjct: 371 CIIDESHVSVPQIRGMYEGDRSRKITLVDHGFRLPCALDNRPLRYDEFEQRIPQFVFVSA 430

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
           TPG +EL   Q + VEQ+IRPTGL+DP VEIR  R Q++D+ DEI     +  R+L+T L
Sbjct: 431 TPGDYELSVSQNV-VEQVIRPTGLLDPRVEIRPTRGQIDDLADEIRTRVTKHERVLVTTL 489

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK MAEDLTE+L +   +V YMHS+  TL+RI+IIR LR G  DVLVGINLLREGLDIPE
Sbjct: 490 TKHMAEDLTEHLLDEGFKVNYMHSDTATLDRIDIIRALRTGTLDVLVGINLLREGLDIPE 549

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
             LVAILDADKEGFLR+K SLIQT+GRAARN    VI+YAD +T S+Q+A+DET RRR  
Sbjct: 550 VSLVAILDADKEGFLRNKRSLIQTMGRAARNAAGSVIMYADRMTDSMQIAVDETKRRRTL 609

Query: 711 QLEHNKKHNINPQSVKEKIMEVI----------------DPILLEDAATTNISIDAQQLS 754
           Q+ +N +H+I PQ++K+ +++V                 D +    + T + + +  Q S
Sbjct: 610 QMRYNAQHHIVPQTIKKSMVDVTSFIQAAHETLDSKQRKDGVFYTASGTLSDNNETHQPS 669

Query: 755 LSKKKGKAH-----------------LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            S  +  A                  L +L+ +M  A+ +++FE AA++RD+I  ++S
Sbjct: 670 KSSGENSATQLCSSLEGMPKEDVAKILGALQDEMLAASASMDFERAAKLRDQIVEVQS 727


>gi|218900287|ref|YP_002448698.1| excinuclease ABC, B subunit [Bacillus cereus G9842]
 gi|228910994|ref|ZP_04074802.1| UvrABC system protein B [Bacillus thuringiensis IBL 200]
 gi|218543131|gb|ACK95525.1| excinuclease ABC, B subunit [Bacillus cereus G9842]
 gi|228848649|gb|EEM93495.1| UvrABC system protein B [Bacillus thuringiensis IBL 200]
          Length = 658

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/655 (54%), Positives = 479/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|116513719|ref|YP_812625.1| excinuclease ABC subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093034|gb|ABJ58187.1| Excinuclease ABC subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 680

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/657 (51%), Positives = 468/657 (71%), Gaps = 2/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQ  AI QL  G  + +K Q+L G TG+GKT+TMA VI  M +P +V+ 
Sbjct: 10  FELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAKMNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +L+ RND IVV+SVSCIYG+G    Y   ++ +  G   E+  LL  LV  QY R 
Sbjct: 130 AATSALMSRNDVIVVASVSCIYGLGDPREYEASVLNVYTGQEYERNTLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + RG FRV GD +E+FP+   D A+R+  FG++I+ I E  PLTG+     ++I ++
Sbjct: 190 DIDLQRGRFRVRGDVVEVFPAGYSDRAYRIEFFGDEIDRIVEVDPLTGEVHGVRDSISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L  A+  IK E+  ++ + EKEG+LLEA+R++QR TYDLEML   G   
Sbjct: 250 PATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLEMLREVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR +  R  GEPP TL ++ P+DSL+ +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL +    IVEQ+IRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNRTSR-IVEQVIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EINL  ++  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVAEINLRIERRERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   LIQT+GRAAR
Sbjct: 489 RMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLIQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT S+++AIDET RRR  Q+++N++H I P+++ + + ++I  +  + 
Sbjct: 549 NANGEVIMYADRITDSMKMAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDMISVVKADK 608

Query: 741 AATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A  + S  D     L+ K+ K  + +L++QM  AA  L+FE AA +RD I  L+ S
Sbjct: 609 EAEKSDSFADLNFDELTAKQKKQMIANLKEQMQDAAKRLDFESAANLRDAIIELEGS 665


>gi|228993874|ref|ZP_04153777.1| UvrABC system protein B [Bacillus pseudomycoides DSM 12442]
 gi|228765825|gb|EEM14476.1| UvrABC system protein B [Bacillus pseudomycoides DSM 12442]
          Length = 658

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/655 (53%), Positives = 477/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI QL+ GI++ +K Q+LLG TG+GKTFT++ VI+ +++P +VMA
Sbjct: 5   FEIVSEYSPQGDQPRAIQQLVAGINNGKKHQVLLGATGTGKTFTISNVIKEVKKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   E + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHVT+PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGSTPYTLIDYFPKDFLIVMDESHVTVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSAMDNRPLMFEEFEEKTNQVVYVSATPGPYELELTPE-VVEQIIRPTGLLDPQID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+    +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLLGEIHDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD IT+S+ +AI+ET RRR+KQ  +N++H I P+++++++ +VI       
Sbjct: 544 NEHGHVIMYADRITRSMGIAIEETKRRRQKQEAYNEEHGITPKTIQKEVRDVIRATTA-- 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A  T +        ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 602 AEETEVYEAGPAKKMTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|196045644|ref|ZP_03112874.1| excinuclease ABC, B subunit [Bacillus cereus 03BB108]
 gi|225867129|ref|YP_002752507.1| excinuclease ABC, B subunit [Bacillus cereus 03BB102]
 gi|196023475|gb|EDX62152.1| excinuclease ABC, B subunit [Bacillus cereus 03BB108]
 gi|225786785|gb|ACO27002.1| excinuclease ABC, B subunit [Bacillus cereus 03BB102]
          Length = 658

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/655 (54%), Positives = 477/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+
Sbjct: 604 EPEIYEVTPAKK--MTKKEREKTIAKVEAEMKEAAKALDFERAAELRDLLLELKA 656


>gi|325291329|ref|YP_004267510.1| Excinuclease ABC subunit B [Syntrophobotulus glycolicus DSM 8271]
 gi|324966730|gb|ADY57509.1| Excinuclease ABC subunit B [Syntrophobotulus glycolicus DSM 8271]
          Length = 708

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 466/655 (71%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   Y   GDQP A+ +L  G+   +K Q LLGVTGSGKTFTMA +I    +PA+V+A
Sbjct: 25  FNLHAPYRLEGDQPQAVDKLTAGVLKGKKHQTLLGVTGSGKTFTMANIIAGANKPALVLA 84

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV  +DTYIEK++SINE+I+++RH
Sbjct: 85  HNKTLAAQLYCEFKEFFPENAVEYFVSYYDYYQPEAYVAFSDTYIEKDASINEEIEKLRH 144

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IVV+SVSCIYG+GS + Y  M++ L+    +++ ++L  LV+ QY R 
Sbjct: 145 SATAALFERRDVIVVASVSCIYGMGSPDEYRDMVLSLRQNQEIDRNKILRKLVEIQYDRN 204

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EI P+   + A RV +FG++IE I E   LTG+ +     + I+
Sbjct: 205 DIAFARGTFRVRGDIVEICPASSSEKAIRVELFGDEIEHIYEVNVLTGEILGERRHVSIF 264

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHYVT R  L  A+  I+ EL+ RL  L    +L+EAQRLEQR  YD+EML   G C 
Sbjct: 265 PNSHYVTEREKLLKAVGNIEIELEERLQVLRGREKLVEAQRLEQRTRYDVEMLRELGFCN 324

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PGE P TL  + P+D LLFVDESH T+PQI GMY GD  RK TL +Y
Sbjct: 325 GIENYSRHLTFREPGETPYTLLHFFPKDFLLFVDESHRTLPQIRGMYEGDRSRKETLVDY 384

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF E+    P  I VSATPG +ELE    + VEQIIRPTGL+DP V+
Sbjct: 385 GFRLPSALDNRPLRFNEFEQYTPLRIYVSATPGPYELEHSP-VSVEQIIRPTGLLDPEVD 443

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI L   +  RIL+T LTKRM+E+LT YL + N++VRY+HS++  LE
Sbjct: 444 VRPIKGQIDDLIGEIRLRIDRDERILVTTLTKRMSEELTNYLKQLNMKVRYLHSDISALE 503

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+R+LRLG+ D++VGINLLREGLD+PE  LVAILDADKEGFLRS++SLIQTIGRAAR
Sbjct: 504 RMEILRELRLGEIDIIVGINLLREGLDLPEVSLVAILDADKEGFLRSESSLIQTIGRAAR 563

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD +T+S+++AI+ET RRR+ Q E+N ++ I PQ+++++I EV +      
Sbjct: 564 NANGKVIMYADKLTRSMKIAIEETNRRRKIQNEYNVRNVITPQTIRKQIYEVPEAT---- 619

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            A    +   +   +S ++ +  +++   +M+ AA +L+FE AA +RD I  LK 
Sbjct: 620 RAAEKEAGYGKTGEVSPEERQKLIQAFEAEMYKAAKDLDFERAAELRDAIIELKG 674


>gi|332638909|ref|ZP_08417772.1| excinuclease ABC subunit B [Weissella cibaria KACC 11862]
          Length = 670

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/658 (51%), Positives = 471/658 (71%), Gaps = 6/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + Y P+GDQP AI +L+ G+ +  K Q+LLG TG+GKTFT++ VI    +P +V++
Sbjct: 10  YEVVSKYEPTGDQPTAIDKLVTGLKNGVKEQILLGATGTGKTFTISNVIAQANKPVLVLS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++R+
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRN 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL RND IVV+SVS I+G+GS E Y+  ++ +++GD +E+ +L+  LV  Q++R 
Sbjct: 130 SATASLLARNDTIVVASVSSIFGLGSPEQYNDHVINVRVGDVIERNDLMRRLVDIQFQRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FR  GD +E+FP+  +  A R+  FG++++ I E   LTG+   +++   I+
Sbjct: 190 DIDFQRGRFRARGDVLEVFPASSDAKALRIEFFGDEVDRIREVDSLTGEVTADLDLATIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T     + A+K I+ EL  +L   E+EG+LLEAQRL+QR  YD+EM+   G   
Sbjct: 250 PATHFMTNDAIRDRALKTIQAELDAQLKVFEEEGKLLEAQRLKQRTEYDIEMIREMGFTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGEPP TL ++ P+D L+ VDESHVT+PQ+ GMY+GD  RK TL ++
Sbjct: 310 GIENYSRHMDGRAPGEPPFTLLDFFPDDFLIVVDESHVTMPQVRGMYKGDRARKETLIDF 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPLR EE+       I +SATPG +E  +     + +QIIRPTGL+DP +
Sbjct: 370 GFRLPSALDNRPLRLEEFEEHVNQIIYMSATPGDYEEARVSHDDVAQQIIRPTGLLDPEI 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  ++V+Y+HS++KTL
Sbjct: 430 EVRPVMGQIDDLLGEINERTAKDERVFVTTLTKKMAEDLTDYLEDVGVKVKYLHSDIKTL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLR+  SLIQTIGRAA
Sbjct: 490 ERTEIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNTRSLIQTIGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VI+YAD IT S+Q A++ET RRR  Q+ +N++H+I P ++K++I  +I   +  
Sbjct: 550 RNENGHVIMYADNITGSMQAAMEETARRRTIQMSYNQEHDITPHTIKKEIRGLI--AVSH 607

Query: 740 DAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           D   TN S    +++   +++   +A + +L  QM  AA  L+FEEAA +RD +  LK
Sbjct: 608 DTTETNESTSFTEVAFKDMARPDQEAMIANLEDQMRAAAKRLDFEEAASLRDAVMELK 665


>gi|229492754|ref|ZP_04386555.1| excinuclease ABC subunit B [Rhodococcus erythropolis SK121]
 gi|229320413|gb|EEN86233.1| excinuclease ABC subunit B [Rhodococcus erythropolis SK121]
          Length = 720

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/692 (52%), Positives = 479/692 (69%), Gaps = 33/692 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI +L K I+  EK  +LLG TG+GK+ T A +IE +QRPA+VMA
Sbjct: 28  FEVVSPYEPAGDQPAAITELEKRINEGEKDVVLLGATGTGKSATTAWLIEKLQRPALVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SS+N+ ++R+RH
Sbjct: 88  PNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSVNDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ +SY    +QL +G  V +   L  LV  QY R 
Sbjct: 148 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSIQLDVGVEVPRDAFLRLLVDVQYNRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG  +R V+T++I+
Sbjct: 208 DMAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGDIVRQVDTVRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A K I+ EL+ RL ELE +G+LLEAQRL  R  YDLEM++  G C 
Sbjct: 267 PATHYVAGPERMERAAKDIEAELEERLAELEGKGKLLEAQRLRMRTQYDLEMIKQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG  P TL +Y PED LL +DESHVT+PQI  MY GD  RK  L E+
Sbjct: 327 GIENYSRHIDGRGPGTAPATLIDYFPEDFLLVIDESHVTVPQIGAMYEGDMSRKRNLVEF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE++     T+ +SATPG +EL Q  G  VEQ+IRPTGL+DP V 
Sbjct: 387 GFRLPSATDNRPLTWEEFSQRIGQTVYLSATPGKYELGQSGGEFVEQVIRPTGLIDPEVI 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A++  R+L+T LTK+M+EDLT+YL E  IRVRY+HS++ TL 
Sbjct: 447 VKPTKGQIDDLVHEIRERAERDERVLVTTLTKKMSEDLTDYLLELGIRVRYLHSDIDTLR 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+  AI+ET RRREKQ+ +N+K  ++PQ +++KI +++D +  E+
Sbjct: 567 NVSGQVHMYADKITASMAQAIEETERRREKQVAYNEKMGVDPQPLRKKIADILDQV-YEE 625

Query: 741 AATTNISIDAQQLSLSKKKGKAH-----------------------------LKSLRKQM 771
           A  T  S+D      +  +G+                               +K L  QM
Sbjct: 626 AEDTAASVDVGGSGRNATRGRRAQGEAGRAVSAGVYEGRDTKSMPRAELADLVKELTDQM 685

Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
             AA +L FE A R+RDEI  LK     +G+D
Sbjct: 686 MNAARDLQFELAGRLRDEISDLKKE--LRGMD 715


>gi|73663268|ref|YP_302049.1| excinuclease ABC subunit B [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|90111054|sp|Q49VV6|UVRB_STAS1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|72495783|dbj|BAE19104.1| excinuclease ABC subunit B [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 660

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/655 (52%), Positives = 466/655 (71%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P GDQP AI +++ G++  ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 6   FKLHSEFEPQGDQPEAIQKIVNGVNEGKRHQTLLGATGTGKTFTMSNVIKQVGKPTLIIA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 66  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D IV++SVSCIYG+G+ E Y  ++V ++ G  +++ ELL  LV  QY R 
Sbjct: 126 SATSALFERDDVIVIASVSCIYGLGNPEEYRDLVVSIRAGMEMDRSELLKKLVDVQYTRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ +R  +   I+
Sbjct: 186 DIDFRRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVLRERDHFAIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    + +A++ I+ EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 246 PASHFVTREEKMKSAIQRIENELEERLAELNAENKLLEAQRLEQRTNYDLEMMREMGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQI GMY GD  RK  L ++
Sbjct: 306 GIENYSVHLTLRPMGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLVDH 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +ELE     +V+QIIRPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPFELEHTDE-MVQQIIRPTGLLDPKIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  R+L+T LTK+M+EDLT YL E  I+V Y+HSE+KTLE
Sbjct: 425 VRPTENQIDDLLGEIQDRIDRNERVLVTTLTKKMSEDLTIYLKEAGIKVNYLHSEIKTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 485 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSQRSLVQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+Y D IT S++ A+DET RRR  Q  +N+KHNI P ++ +KI +VI   +  D
Sbjct: 545 NSRGEVIMYGDKITDSMRYALDETERRRTIQEAYNEKHNITPTTINKKIHDVISATVEND 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                   +  +  ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 605 ETNEQQQTEVPK-KMTKKEREKTIANIEKEMKQAAKDLDFEKATELRDMLFELKA 658


>gi|302528101|ref|ZP_07280443.1| excinuclease ABC, B subunit [Streptomyces sp. AA4]
 gi|302436996|gb|EFL08812.1| excinuclease ABC, B subunit [Streptomyces sp. AA4]
          Length = 727

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/690 (52%), Positives = 480/690 (69%), Gaps = 30/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQPAAI +L + I + EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 36  FEVVSEYQPAGDQPAAIDELERRIRAGEKDVVLLGATGTGKSATTAWLIERVQRPTLVMA 95

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +  FPHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 96  PNKTLAAQLANELRELFPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 155

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D IVV+SVSCIYG+G+ +SY     +L++G +VE+  LL +LV  QY R 
Sbjct: 156 SATMNLLSRRDVIVVASVSCIYGLGTPQSYLDRSTKLEVGATVERDVLLRALVDVQYSRN 215

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P++ E++A RV  FG++I+++   +PLTG  +R V+ ++I+
Sbjct: 216 DIAFARGTFRVRGDTVEIIPAY-EELAIRVEFFGDEIDKLYYLHPLTGDIVREVDEVRIF 274

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A++ I+ EL+ RL ELEK+G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 275 PATHYVAGPERMEKAIRGIEAELEERLAELEKQGKLLEAQRLRMRTAYDIEMMRQVGFCS 334

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG  P TL +Y PED LL +DESH T+PQI GMY GD  RK  L +Y
Sbjct: 335 GIENYSRHIDGRGPGSAPATLIDYFPEDFLLVIDESHQTVPQIGGMYEGDMSRKRNLVDY 394

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE++     T+ +SATPG +E+ Q  G  VEQ+IRPTGLVDP V 
Sbjct: 395 GFRLPSAVDNRPLTWEEFSDRIGQTVYLSATPGPYEMGQTGGEFVEQVIRPTGLVDPKVV 454

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+  EI   A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 455 VKPTEGQIDDLVHEIRERADKDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSEVDTLR 514

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 515 RVELLRQLRAGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAAR 574

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739
           NV+ +V +YAD IT S++ AIDET RRR KQ+ +N++  ++PQ +++KI +++D +  E 
Sbjct: 575 NVSGEVHMYADKITDSMKYAIDETDRRRAKQVAYNEERGLDPQPLRKKIADILDRVYTEA 634

Query: 740 --DAATTNISIDAQQLSLSKKKGKAH------------------------LKSLRKQMHL 773
                T  +    +  S  KK  +                          ++ +  QM  
Sbjct: 635 EDSDETVAVGGSGRNSSRGKKPEQGDRVRSSGMLTDKNVSAMPRAELADLIQQMTDQMMQ 694

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE AAR+RDE+  LK     +G+D
Sbjct: 695 AARDLQFELAARLRDEVADLKKE--LRGMD 722


>gi|262067598|ref|ZP_06027210.1| excinuclease ABC subunit B [Fusobacterium periodonticum ATCC 33693]
 gi|291378713|gb|EFE86231.1| excinuclease ABC subunit B [Fusobacterium periodonticum ATCC 33693]
          Length = 663

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/651 (52%), Positives = 472/651 (72%), Gaps = 4/651 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ ++Y P GDQP AI  ++K I    K Q+LLGVTGSGKTFT+A VIE +QRPA++
Sbjct: 4   NLFKIHSEYKPMGDQPTAIESIVKNIERGVKDQVLLGVTGSGKTFTIANVIERLQRPALI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID++
Sbjct: 64  IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     +++KEL+  L+  +Y+
Sbjct: 124 RNAATAALIHRRDVIIVASVSSIYGLGSPDTYRKMTIPIDKQTGIQRKELMKKLITLRYE 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377
           R DI   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQKI+ N+E I
Sbjct: 184 RNDIAFERGKFRIKGDVIDIYPSYMNN-GYRLEYWGDDLEEISEINTLTGQKIKKNLERI 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + Y+T     +  ++ IK++L++ +   E E +LLEAQRL QR  YDLEM+   G
Sbjct: 243 VIYPATQYLTADDDKDRIIEEIKDDLRVEVKSFEDEKKLLEAQRLRQRTEYDLEMITEIG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSRYL+G+ PGE P TLFEY P+D LLF+DESH+T+PQ+ GMY GD  RK  L
Sbjct: 303 YCKGIENYSRYLSGKRPGETPDTLFEYFPKDFLLFIDESHITVPQVRGMYNGDRARKEAL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E GFRL + +DNRPLRFEE+      T+ +SATPG +E+E     I EQ+IRPTG+VDP
Sbjct: 363 VENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEIEVSDNNIAEQLIRPTGIVDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR  + QV+D+ DEI     +  R+L+T LTK++AE+LTEY  E  ++V+YMHS++ 
Sbjct: 423 EIEIRPTKNQVDDLLDEIRKRVAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTIGR
Sbjct: 483 TLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  +NI+P+S+ ++I E  D I 
Sbjct: 543 AARNVEGRVILYADIMTDSMKEAIIETERRRKIQKEYNAYNNIDPKSIVKEIAE--DLIN 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           L+         + +++  SK   +  +  L K++    + L+FE+A  +RD
Sbjct: 601 LDYGIEDKKFENDKKVFRSKADIEKEISKLEKKIKKLVEELDFEQAIVLRD 651


>gi|289705494|ref|ZP_06501886.1| excinuclease ABC, B subunit [Micrococcus luteus SK58]
 gi|289557723|gb|EFD51022.1| excinuclease ABC, B subunit [Micrococcus luteus SK58]
          Length = 709

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/688 (51%), Positives = 475/688 (69%), Gaps = 36/688 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AIA+L + + + EK  +L+G TG+GK+ T A ++E +QRP +VM 
Sbjct: 14  FEVISPYQPSGDQPKAIAELAERVEAGEKDVVLMGATGTGKSATTAWLVERLQRPTLVMV 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+RH
Sbjct: 74  QNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D IVV++VSCIYG+G+ E Y + +V L+ G  +++  LL   V+ QY R 
Sbjct: 134 SATNALLTRRDVIVVATVSCIYGLGTPEEYIEQMVTLRRGAEMDRDVLLRRFVQMQYVRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E++A R+  FG++IE I   +PLTGQ +R  E + I+
Sbjct: 194 DVDFHRGTFRVRGDTVEIIPMY-EELAVRIEFFGDEIESIQTLHPLTGQVVREEEEMYIF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I++EL+ RL ELE + +LLEAQRL  R TYDLEM++  G C 
Sbjct: 253 PASHYVAGDERMGRAITTIEDELRERLQELESQDKLLEAQRLRMRTTYDLEMMQQMGYCN 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P  L +Y P+D LL VDESHVTIPQI  MY GD  RK TL E+
Sbjct: 313 GIENYSRHIDGRPAGSAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYEGDMSRKRTLVEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+++E+      T+ +SATPG++EL Q  G  VEQIIRPTGLVDP V 
Sbjct: 373 GFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGAYELGQADGY-VEQIIRPTGLVDPQVV 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ ++I +   +  R+L+T LTKRMAEDLT+YL E  ++V Y+HS+V TL 
Sbjct: 432 VKPTEGQIDDLLEQIRVRTAKDERVLVTTLTKRMAEDLTDYLLEAGVKVEYLHSDVDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 492 RVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD +T S++ AI+ET RRR  Q+ +N++H I+PQ ++++I ++ D +  ED
Sbjct: 552 NVSGEVHMYADNVTDSMRRAIEETERRRAVQIAYNEEHGIDPQPLRKRIADITDQLARED 611

Query: 741 AATTNI---------------------SID-------------AQQLSLSKKKGKAHLKS 766
           A T +                      S+D                 SL  K     ++ 
Sbjct: 612 ADTADFLKGMGGVKSGFDFGMGHRGLSSLDRAPATGEGAEAPAVDPASLPAKDLADLIEQ 671

Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + +QMH AA +L FE AAR+RDE+  LK
Sbjct: 672 MSQQMHQAAADLQFELAARLRDEVGELK 699


>gi|188996747|ref|YP_001930998.1| excinuclease ABC, B subunit [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931814|gb|ACD66444.1| excinuclease ABC, B subunit [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 663

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/654 (52%), Positives = 467/654 (71%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++++ P+GDQP AI QL + + S    Q+LLG TG+GKTFT+A +IE   RP ++++
Sbjct: 6   FNLKSNFKPTGDQPKAIKQLYENLISGVNQQVLLGATGTGKTFTIANLIEKYGRPTLILS 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K  FP NAVEYFVSYYDYYQPEAY+P+ D YIEK+S+IN+ IDR+RH
Sbjct: 66  HNKTLAAQLYREIKELFPDNAVEYFVSYYDYYQPEAYIPQKDLYIEKDSAINDAIDRLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL+ER D IVV+SVSCIYG+G+ E Y ++ +QL +G  ++++ LL  LV+ QY+R 
Sbjct: 126 SATRSLIERPDTIVVASVSCIYGLGTPEFYEKLRLQLYVGMEIDRQTLLRKLVELQYQRD 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGTF+V GD++EI P++ ED+  RV  FG++IE ISE         R ++   I+
Sbjct: 186 DFSLKRGTFKVKGDTVEILPAYTEDIIVRVEFFGDEIESISEIDIFNRDVKRKLDRTVIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV PRP +  A+K I+++L++ + E  + G+ +EA RL QR  YD+EM+   G+C+
Sbjct: 246 PASHYVIPRPDMLEAIKQIQKDLEIEVEEFRRAGKEIEANRLWQRTNYDIEMMLELGTCK 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY  GR PGEPP TL +Y PED LL VDESHVTIPQI  MY GDF RK  L +Y
Sbjct: 306 GIENYSRYFDGRKPGEPPYTLIDYFPEDFLLIVDESHVTIPQIKAMYNGDFSRKENLVKY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           G+R+ S  DNRPL+FEE+       I VSATP  WE+++ +G+IVEQIIRPTGL+DP +E
Sbjct: 366 GWRMKSAYDNRPLKFEEFVQKIQKAIYVSATPADWEIKRSKGVIVEQIIRPTGLLDPVIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ +EI    ++  R+++  LTK+MAE L +YL ER I+  Y+HSE+ T+E
Sbjct: 426 VKKTEGQIDDLINEIWKVKERDERVIVITLTKKMAEHLADYLTEREIKAIYLHSEIDTIE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II++ R GK+DV+VG+NLLREGLD+PE  LVA+LDADK+GFLRSKT+LIQTIGRAAR
Sbjct: 486 RVKIIKEFREGKYDVIVGVNLLREGLDMPEVSLVAVLDADKQGFLRSKTALIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILYAD +T ++   I+ET RRR+ Q E+NKKH I P+++ +   EV D I LE+
Sbjct: 546 NVNGKAILYADKLTPAMIETIEETNRRRKIQEEYNKKHGIIPKTISK---EVKDLISLEE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                I         S++     ++ L KQM   A N  FE+AA IRD++++LK
Sbjct: 603 LGILEIYNQLPDDINSEEDLMKKIEQLEKQMWDYAKNWEFEKAAEIRDQLEKLK 656


>gi|150019672|ref|YP_001311926.1| excinuclease ABC subunit B [Clostridium beijerinckii NCIMB 8052]
 gi|189037959|sp|A6M2Z0|UVRB_CLOB8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|149906137|gb|ABR36970.1| excinuclease ABC, B subunit [Clostridium beijerinckii NCIMB 8052]
          Length = 657

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/656 (53%), Positives = 470/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+ + P+GDQP AI +L+  I S  + Q LLGVTGSGKTFTMA VIE +QRP I++A
Sbjct: 4   FKIQSRFKPTGDQPQAIDKLVNSIKSNNRAQTLLGVTGSGKTFTMANVIEKLQRPTIILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G+ + Y ++ + L+ G   E+ E++  L++ QY+R 
Sbjct: 124 SATSALFERRDVIIVASVSCIYGLGNPDEYKKLTISLRTGMEKERDEVIKKLIEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GDS++I P+   +   R+  FG++I+ I EF  LTG  +     + I 
Sbjct: 184 DIDFSRGTFRVRGDSLDIIPASYSNKGIRIEFFGDEIDRIREFDVLTGSILGERNHVAIT 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T R T++ A+  I+ EL+ RL EL  + +LLEAQRL QR  +D+EM++  G C 
Sbjct: 244 PASHFATSRETVDKAIGIIEGELEERLRELNAQDKLLEAQRLRQRTNFDIEMIKEMGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR  G PP TL +Y PED L+F+DESHVT+PQ+  MY GD  RK TL +Y
Sbjct: 304 GIENYSRILDGRASGTPPKTLIDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKNTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+FEE+       + VSATP ++E++  +  I EQIIRPTGL+DP + 
Sbjct: 364 GFRLPCAYDNRPLKFEEFEKKINQVVFVSATPSAYEIDNSEE-IAEQIIRPTGLLDPEII 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+Y EIN   + G RIL+T LTKRM+EDLT+YL E  ++  YMHS++ T+E
Sbjct: 423 IRPIKGQIDDLYGEINKTIECGFRILITTLTKRMSEDLTKYLIELGVKTTYMHSDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLG++DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMKIIRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+YAD ITKS+  A+ ET RRR  Q ++N++H I P ++ + + ++I+   + +
Sbjct: 543 NSESKVIMYADNITKSMDKAMKETERRRAIQKDYNERHGIVPTTIIKDVRDIIEATKVAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 +  A +  L+KK+    +K L ++M LAA NL FE AA +RD I  +K  
Sbjct: 603 EVEEYKA--ADKKKLTKKEKDKLIKDLTEEMLLAAKNLQFERAAELRDIINEIKDG 656


>gi|308234505|ref|ZP_07665242.1| excinuclease ABC, B subunit [Atopobium vaginae DSM 15829]
          Length = 742

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/697 (50%), Positives = 472/697 (67%), Gaps = 36/697 (5%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEA 191
            HSK    FQ+  D+ P GDQP AI  L KG+   + + Q LLGVTGSGKTFTMA +IE 
Sbjct: 15  GHSKQQQPFQVVADFAPKGDQPRAINALTKGVMQDKLRYQTLLGVTGSGKTFTMANLIEQ 74

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            Q+  +++ PNK LAAQ+ SE K  FPHNAV YFVSYYDYYQPEAY+P+TDTYIEK+SSI
Sbjct: 75  TQKTTLIIEPNKTLAAQVASEMKTLFPHNAVVYFVSYYDYYQPEAYIPQTDTYIEKDSSI 134

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           NE+++++RH  T SLL R D IVV+SVSCIYGIGS + Y+ +   +     +E+ + + S
Sbjct: 135 NEEVEKLRHQTTSSLLSRRDVIVVASVSCIYGIGSPQDYAGLAPTIDKNTPLERDDFIRS 194

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           L+  QY R D+ +IRGTFRV GD +++F  + E    RVS FG++IE I+EF  +TG  +
Sbjct: 195 LIDIQYDRNDVDLIRGTFRVRGDCVDVFTPYGEH-PIRVSFFGDEIEMIAEFDEVTGDTL 253

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
              + + I+  +HYV+ RP +N A+  I++EL+ R+ EL+    LLEAQRL+QR +YDLE
Sbjct: 254 SQYDALPIWPATHYVSARPKINHAILTIRDELEARVQELKAHNMLLEAQRLQQRCSYDLE 313

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           MLET G C  IENYSR+L GR PGE P TL +Y PED L  +DESHV++PQI GMY GD 
Sbjct: 314 MLETMGFCSGIENYSRHLDGRKPGEAPYTLIDYFPEDMLCIIDESHVSVPQIRGMYEGDR 373

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK TL ++GFRLP  +DNRPLR++E+    P  + VSATPG +EL   Q + VEQ+IRP
Sbjct: 374 SRKITLVDHGFRLPCALDNRPLRYDEFEQRIPQFVFVSATPGDYELSVSQNV-VEQVIRP 432

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP VEIR  R Q++D+ DEI     +  R+L+T LTK MAEDLTE+L +   +V Y
Sbjct: 433 TGLLDPRVEIRPTRGQIDDLADEIRTRVTKHERVLVTTLTKHMAEDLTEHLLDEGFKVNY 492

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MHS+  TL+RI+IIR LR G  DVLVGINLLREGLDIPE  LVAILDADKEGFLR+K SL
Sbjct: 493 MHSDTATLDRIDIIRALRTGTLDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNKRSL 552

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQT+GRAARN    VI+YAD +T S+Q+A+DET RRR  Q+ +N +H+I PQ++K+ +++
Sbjct: 553 IQTMGRAARNAAGSVIMYADRMTDSMQIAVDETKRRRTLQMRYNAQHHIVPQTIKKSMVD 612

Query: 732 VI----------------DPILLEDAATTNISIDAQQLSLSKKKGKAH------------ 763
           V                 D +    + T + + +  Q S S  +  A             
Sbjct: 613 VTSFIQAAHETLDSKQRKDGVFYTASGTLSDNNETHQPSKSSGENSATQLCSSLEGMPKE 672

Query: 764 -----LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                L +L+ +M  A+ +++FE AA++RD+I  ++S
Sbjct: 673 DVAKILGALQDEMLAASASMDFERAAKLRDQIVEVQS 709


>gi|320531289|ref|ZP_08032265.1| excinuclease ABC subunit B [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320136492|gb|EFW28464.1| excinuclease ABC subunit B [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 698

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/677 (52%), Positives = 480/677 (70%), Gaps = 25/677 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQPAAIA+L + + + EK  +LLG TG+GK+ T A ++E +QRP +++ 
Sbjct: 14  FEVVSPYSPSGDQPAAIAELTERLRAGEKDIVLLGATGTGKSATTAWLVEQVQRPTLILE 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ+ +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH
Sbjct: 74  PNKTLAAQMAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ + Y   +  L++G  +++ +LL   V  QY R 
Sbjct: 134 SATNSLLTRRDVVVVSSVSCIYGLGTPQEYVDRMTPLEVGQQIDRDDLLRRFVTMQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++IE ++  +P+TG  I  V  + ++
Sbjct: 194 DIDFTRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIEALATLHPVTGDVIDTVGQVFVF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A++ I+ EL  RL +LE +GRLLEAQRL  R TYDLEML+  G C 
Sbjct: 253 PASHYVAGPERMQKAIEGIEAELAERLAQLEHDGRLLEAQRLRMRTTYDLEMLQQIGMCS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR  G PP TL +Y PED LL +DESHVT+PQI  M+ GD  RK TL ++
Sbjct: 313 GIENYSLHIDGREVGTPPNTLLDYFPEDFLLVIDESHVTVPQIGAMHEGDASRKRTLVDH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+      T+ +SATPG +E ++  G+ VEQIIRPTGLVDP V 
Sbjct: 373 GFRLPSALDNRPLTFAEFEDRIGQTVYLSATPGDYETQRSDGV-VEQIIRPTGLVDPKVV 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    QV+D+ +E+    ++  RIL+T LTKRMAEDLT YL ER +RV Y+HS+V TL 
Sbjct: 432 VKPTEGQVDDLLEEVRTRVERQERILVTTLTKRMAEDLTTYLAERGVRVEYLHSDVDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LRLG+FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 492 RVELLRELRLGRFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YADTIT ++  AI+ET RRR KQL +N +H I+PQ +++KI +V D +  ED
Sbjct: 552 NVSGEVHMYADTITPAMAEAIEETERRRTKQLAYNTEHGIDPQPLRKKIADVTDMLARED 611

Query: 741 AATTNI-----------SIDAQQLSLSKK------KGKAH------LKSLRKQMHLAADN 777
             T ++           SI A++   ++        G A       +  L +QMH AA++
Sbjct: 612 VDTADLLAGGYRGHEDSSIRARRKHAAEATVRERLAGAAQGDLVELINELTQQMHAAAED 671

Query: 778 LNFEEAARIRDEIKRLK 794
           L+FE AAR+RDEI+ LK
Sbjct: 672 LHFELAARLRDEIQDLK 688


>gi|224369427|ref|YP_002603591.1| UvrB1 [Desulfobacterium autotrophicum HRM2]
 gi|223692144|gb|ACN15427.1| UvrB1 [Desulfobacterium autotrophicum HRM2]
          Length = 663

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/665 (52%), Positives = 471/665 (70%), Gaps = 17/665 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F +++ + P+GDQP+AI  L KGI  ++K Q+LLGVTGSGKTFTMA +I    RPA+
Sbjct: 1   MTQFNIKSPFQPTGDQPSAIDFLSKGIFEKKKHQVLLGVTGSGKTFTMANIIARTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY+EFK  FP NAVEYFVSYYDYYQPEAY+P +DTYI+K+SSINE ID+
Sbjct: 61  VIAPNKTLAAQLYNEFKTLFPENAVEYFVSYYDYYQPEAYIPTSDTYIQKDSSINEMIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK--ELLSSLVKQ 315
           MRHSATRS+L R D IVV+SVSCIYG+G+ E Y  + ++++I + +E+   +LL+ LV  
Sbjct: 121 MRHSATRSVLARKDVIVVASVSCIYGLGAPEDY--LALRVEINEEMEKSRDKLLAELVNI 178

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY+R D+   RGTFRV GD +E+FP++  D A R+  FG+ I+ + E  PL G  +  ++
Sbjct: 179 QYQRNDVDFHRGTFRVRGDRVEVFPAYETDKALRIDFFGDTIDGVFEVDPLKGDVLNRIK 238

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              ++  SHYVT   T   A++ IK ELK+R+     E RL+EAQR+E+R  YDLEM+  
Sbjct: 239 GTAVFPASHYVTLNQTRQRAVETIKAELKVRIDFFRNENRLIEAQRIEERTQYDLEMINE 298

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR+LTGR  GEPPPTL +Y PED L F DESH+++ Q+  MY+ D  RK 
Sbjct: 299 IGYCNGIENYSRHLTGRAQGEPPPTLIDYFPEDFLCFFDESHISVSQVGAMYKADRSRKE 358

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L  +GFRLPS +DNRPL+F+E+    P  I VSATP  +EL      + EQI+RPTGL+
Sbjct: 359 NLVGHGFRLPSALDNRPLKFDEFKKKIPQAIYVSATPADYELSLAGTRVAEQIVRPTGLL 418

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +E+R A TQV+D+Y+EI    +   R+L+T LTKRM+EDLT+Y  +  I+V+Y+HS+
Sbjct: 419 DPAIEVRKATTQVDDLYEEIVKRVEAEERVLVTTLTKRMSEDLTDYFSDFGIKVKYLHSD 478

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + T+ERI+II+DLR G FDVL+GINLLREGLDIPE  LVA+LDADKEGFLRS  SL+QT 
Sbjct: 479 IGTVERIDIIQDLRKGVFDVLIGINLLREGLDIPEVTLVAVLDADKEGFLRSYRSLVQTF 538

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN   KVI+YAD IT S++ A+DET RRR  Q ++N+ HNI P ++ ++I ++ D 
Sbjct: 539 GRAARNACGKVIMYADRITPSMKKAMDETDRRRIIQKQYNQDHNIVPTTIIKEI-KMFDY 597

Query: 736 ILLEDAATTNISI-------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            + +D A  +  +       DA   +L++      + +L+ +M  AA  + FE AA +RD
Sbjct: 598 TMEKDLADLSPGVGESTTVYDADTDNLAEI-----IANLKVEMKQAARKMEFETAATLRD 652

Query: 789 EIKRL 793
            I+ L
Sbjct: 653 RIREL 657


>gi|311113506|ref|YP_003984728.1| excision endonuclease subunit UvrB [Rothia dentocariosa ATCC 17931]
 gi|310945000|gb|ADP41294.1| excision endonuclease subunit UvrB [Rothia dentocariosa ATCC 17931]
          Length = 722

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/703 (50%), Positives = 480/703 (68%), Gaps = 55/703 (7%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L + + + EK  +L+G TG+GK+ T A ++E++QRP +VM 
Sbjct: 14  FEVVSPYQPAGDQPKAIVELTERVENGEKDIVLMGATGTGKSATAAWLVESVQRPTLVMV 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E +   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+RH
Sbjct: 74  QNKTLAAQLANELRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVS+VSCIYG+G+ E Y + +V L+ GD +++ +LL   V  QY R 
Sbjct: 134 SATNSLLTRRDVVVVSTVSCIYGLGTPEEYVEQMVTLERGDEIDRDDLLRQFVNMQYARN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E+ A R+  FG++IE I   +PLTG+ IR  + + ++
Sbjct: 194 DMDFHRGTFRVRGDTVEIIPMY-EEHAIRIEFFGDEIEAIYTLHPLTGEVIREEDEMYVF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I++EL+ RL  LE +G+LLEAQRL  R TYDLEM+E  G   
Sbjct: 253 PASHYVAGPERMARAIASIEDELQERLQTLESQGKLLEAQRLRMRTTYDLEMMEQMGFTS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR+ G  P  L +Y P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 313 GIENYSRHIDGRSAGSAPHCLLDYFPDDFLLIIDESHVTVPQIGAMYEGDMSRKRTLVEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+++E+      TI +SATPG +EL Q  G  VEQIIRPTGLVDP + 
Sbjct: 373 GFRLPSAMDNRPLKWDEFLERIGQTIYLSATPGKYELSQADGY-VEQIIRPTGLVDPEII 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ ++I    ++  R+L+T LTKRMAEDLTEYL +  +RV+Y+HS+V TL+
Sbjct: 432 VKPTKGQIDDLLEQIQERTERDERVLVTTLTKRMAEDLTEYLVQHGVRVQYLHSDVDTLK 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 492 RVELLRELRMGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YADT+T S++ AIDET RRRE Q  +N++H I+PQ +++KI ++ D +  E+
Sbjct: 552 NVSGQVHMYADTVTDSMRTAIDETNRRREIQQAYNREHGIDPQPLRKKIADITDVLAREE 611

Query: 741 AATTNISIDAQQLSLSKKKG------------------------------KAH------- 763
             T  +     QL  S KKG                              KA        
Sbjct: 612 EDTHEL----LQLRKSGKKGSRTVEAGAKTGSSTSSKIAASTPESDALLAKAQDRVRADG 667

Query: 764 ------------LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                       ++ L +QM LAA+NL FE AAR+RDE+  LK
Sbjct: 668 LAAEPAEDLLELIEQLSEQMRLAAENLQFELAARLRDELTDLK 710


>gi|256820270|ref|YP_003141549.1| excinuclease ABC subunit B [Capnocytophaga ochracea DSM 7271]
 gi|256581853|gb|ACU92988.1| excinuclease ABC, B subunit [Capnocytophaga ochracea DSM 7271]
          Length = 665

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/665 (52%), Positives = 469/665 (70%), Gaps = 17/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ P+GDQP AI QL+KGI   +K Q+LLGVTGSGKTFT+A V+E +QRP +V+A
Sbjct: 3   FNIVSDFAPTGDQPQAIDQLVKGIERNDKYQVLLGVTGSGKTFTIANVVERIQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P T TYIEK+ SIN++I+++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYIPSTGTYIEKDLSINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T +LL  R D +VV+SVSC+YGIG+   + + ++ LK GD + + +L+  LV+  Y R
Sbjct: 123 STTSALLSGRRDVLVVASVSCLYGIGNPVEFQKNVITLKQGDVLPRTKLMHRLVQSLYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                  G FR+ GD +++FP + +D A+R+  FG++IEEI +F P T   + + +++ I
Sbjct: 183 TTAEFRHGNFRIKGDVLDVFPGY-DDNAFRIHFFGDEIEEIEQFDPTTNHVLDHYQSLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+++L  ++   E  G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDILQKAIWNIQQDLVKQVEFFEALGKPLEAKRLKERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ +DESHVT+ Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLIDYFPDDFLMVIDESHVTVSQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL+Q QG+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQQTQGVYVEQVIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  RIL+T LTKRMAE+LT+YL    IR RY+HS+V TL
Sbjct: 422 EVRPSANQIDDLVEEIQLRTEKDERILVTTLTKRMAEELTKYLTRIGIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RNVN K I+YAD IT S+Q  ID+T  RREKQ+ +NK HNI PQ + +KI   +      
Sbjct: 542 RNVNGKAIMYADKITDSMQRTIDDTNYRREKQMNYNKAHNITPQPLHKKIENSLSKSPIT 601

Query: 734 ----DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
               DP   E  A      +AQ + LS K+ +  +K  RK M +AA  L+F +AA+ RDE
Sbjct: 602 EFHYDPSFKERTAA-----EAQSVYLSAKELEKKIKETRKLMEVAAKELDFVKAAQYRDE 656

Query: 790 IKRLK 794
           +K+L+
Sbjct: 657 LKKLQ 661


>gi|229822874|ref|ZP_04448944.1| hypothetical protein GCWU000282_00164 [Catonella morbi ATCC 51271]
 gi|229787687|gb|EEP23801.1| hypothetical protein GCWU000282_00164 [Catonella morbi ATCC 51271]
          Length = 660

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/656 (53%), Positives = 466/656 (71%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y PSGDQP AI  L++G++   K Q+LLG TG+GKTFT+A VI+   RP +V+A
Sbjct: 3   FQLVAPYSPSGDQPEAIEALVQGVNDGVKEQVLLGATGTGKTFTIANVIKQTGRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE   FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 63  HNKTLAGQLYSELLEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA+ +L+ER D IVV+SVSCIYG+   E+Y   ++ L+ G  + +  LL+ LV+ Q+ R 
Sbjct: 123 SASSALIERRDVIVVASVSCIYGLVDPENYRNHVLSLREGMEIPRNVLLARLVEMQFVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIF +  +    RV  FG++IE I     LTG+   +V+   I+
Sbjct: 183 DIDFQRGTFRVRGDVVEIFMASRDKEVVRVEFFGDEIERIRVVDFLTGEIKYDVDHYPIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+V  +     A++ I++EL+ RL EL  + +LLEAQRLEQR TYDLEM+   G C 
Sbjct: 243 PATHFVASQEQTAVAVESIRQELEERLAELRADNKLLEAQRLEQRTTYDLEMMLEMGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG+ P TL ++ P+D L+ VDESH+T+ QI GMY GD  RK  L +Y
Sbjct: 303 GIENYSRHIDGRAPGQAPYTLLDFFPDDFLIVVDESHITMSQIRGMYNGDRGRKQQLIDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       I VSATPG +ELE   G +++QIIRPTGL+DP VE
Sbjct: 363 GFRLPSALDNRPLRLEEFEEHVNQIIYVSATPGPYELEHTGGEVIQQIIRPTGLLDPVVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+ +T LTK+MAEDLT+YL E +I+V+Y+HS++KTLE
Sbjct: 423 VRPIEGQIDDLVAEIKARTERDERVFITTLTKKMAEDLTDYLKELDIKVKYLHSDIKTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 483 RTEIIRDLRLGVFDVLVGINLLREGLDVPEVTLVAILDADKEGFLRSERSLVQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT S+Q AI+ET RRR  Q+ +N++H I P+++K++I ++I      +
Sbjct: 543 NANGRVIMYADQITASMQYAIEETERRRSIQMAYNQEHGIVPKTIKKEIRDLIRITHDVE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 S+  Q   LS+ + +  L+ L  +M  AA +LNFE AA +RD I  LK +
Sbjct: 603 NEDKQESLLKQFRKLSRLQREEQLERLEMEMRQAAKDLNFEAAADLRDMIMELKGA 658


>gi|123967072|ref|YP_001012153.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9515]
 gi|123201438|gb|ABM73046.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str. MIT
           9515]
          Length = 679

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/670 (51%), Positives = 469/670 (70%), Gaps = 17/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++Q  Y P+GDQP AI +L++G++S ++ Q LLG TG+GKTFT+A VI+   RPA+++A
Sbjct: 4   YKLQAPYEPNGDQPKAIKKLVQGVNSGKEFQTLLGATGTGKTFTIANVIQQTGRPALILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 64  HNKTLAAQLCNELRQFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V+  +G+S++ +  L +LV  QY R 
Sbjct: 124 SATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFAVGESIDLRSSLRALVDNQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ I RG FR+ GD +EI P++ ED   R+ +FG++IE I    PLTG+ + +++ + +Y
Sbjct: 184 DVEITRGRFRIKGDVLEIGPAY-EDRLIRIELFGDEIEAIRFVDPLTGEILESLDQVSVY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L  A+  I+ ELK +L +   EG+LLEAQRLEQR  YDLEML   G C 
Sbjct: 243 PAKHFVTPKERLEAAITAIRNELKEQLDKFACEGKLLEAQRLEQRTKYDLEMLREVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L GR  G PP  L +Y P D LL VDESHVT PQ+  MY GD  RK  L ++
Sbjct: 303 GVENYARHLAGREEGTPPECLIDYFPTDWLLVVDESHVTCPQLHAMYNGDQARKKVLIDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+      T+ +SATPG WEL+QC+G  +EQ+IRPTG++DP ++
Sbjct: 363 GFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWELDQCEGQFIEQVIRPTGVLDPIID 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  Q++D+  EI + A++  R+L+T LTKRMAEDLT++L +  +RVRY+HSE+ ++E
Sbjct: 423 VRPSDGQIDDLLSEIRVRAKKNQRVLVTTLTKRMAEDLTDFLSDNKVRVRYLHSEIHSIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           +V    +LYAD  T+S++ AIDET RRR  Q ++N+ + I PQ   +KI   I   L   
Sbjct: 543 HVEGVALLYADNFTQSMKRAIDETDRRRTIQKKYNQINGITPQPAGKKIENSILSFLELS 602

Query: 738 --LEDAATT----NISIDAQQLSLSKKKGKAHLK-------SLRKQMHLAADNLNFEEAA 784
             LE    +    N+  +     L+ K  +  L+        L  +M  AA  LNFEEAA
Sbjct: 603 RKLETGGFSKDLINVVSNKTDEILNAKDNQCLLEEMPNLIDKLENKMKEAAKELNFEEAA 662

Query: 785 RIRDEIKRLK 794
            +RD IK+L+
Sbjct: 663 NLRDRIKKLR 672


>gi|307244693|ref|ZP_07526796.1| excinuclease ABC, B subunit [Peptostreptococcus stomatis DSM 17678]
 gi|306491944|gb|EFM63994.1| excinuclease ABC, B subunit [Peptostreptococcus stomatis DSM 17678]
          Length = 657

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/650 (52%), Positives = 470/650 (72%), Gaps = 2/650 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI ++ + I    K Q L+GVTGSGKTF MA +I+ +++P +V+A
Sbjct: 3   FKLVSDYVPTGDQPEAIDRISQSIEEGNKYQTLVGVTGSGKTFAMANIIQRVKKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV  +DTYIEK++SIN++ID++RH
Sbjct: 63  HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT ++LER+D I++SSVSCIYG+G  + Y ++++ L+ G   ++ +++  LV+ QY+R 
Sbjct: 123 SATAAILERDDTIIISSVSCIYGLGDPKDYKELMLSLRPGMVRDRDDIIKRLVEIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  IRGTFRV GD +EIFP+  ++ A R+  FG++I+ I+E   +TG+ +     + I+
Sbjct: 183 DVNFIRGTFRVRGDILEIFPASNDEKAIRIEFFGDEIDRITEIDYVTGKVVGQRNHVVIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    +  A+  I+EEL   + + +   +LLEAQR+EQR  YD+EML   G CQ
Sbjct: 243 PASHYVTTPERIERAIGTIEEELDQAIADFKSRDKLLEAQRIEQRTKYDIEMLREIGFCQ 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++TGR+ GE P TL ++ P+D L+ VDESHVTIPQ+ GMY GD  RK +L E 
Sbjct: 303 GIENYSRHITGRSKGEKPYTLMDFFPDDYLIIVDESHVTIPQVRGMYAGDRSRKKSLIEN 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRL S  DNRPL FEE+       +  +ATPG +E+E  + +  EQIIRPTGL+DP V 
Sbjct: 363 GFRLESAYDNRPLNFEEFESNIHQVLFTTATPGPYEMEHTE-VFAEQIIRPTGLLDPTVS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +G R+L+T LTK+M+EDLT+YL E  I+V+YMHS++ TLE
Sbjct: 422 VRPVENQIDDLIVEINRNVDKGERVLITTLTKKMSEDLTKYLLESGIKVKYMHSDIVTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TS+IQTIGRAAR
Sbjct: 482 RTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSMIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +T S+Q AI ET RRR  Q+ +N+K+ I P+++++ + + I+   + +
Sbjct: 542 NSNGRVIMYADRVTDSMQRAISETERRRAIQMAYNEKYGIVPKTIQKGVRDSIEATRIAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
              +    D + L    +  +A +  ++ +M  AA+NL FE+AA +RD+I
Sbjct: 602 EVESYDVNDIRALKDEAQISQA-IIVMKSEMMAAAENLEFEKAAELRDKI 650


>gi|257784749|ref|YP_003179966.1| excinuclease ABC, B subunit [Atopobium parvulum DSM 20469]
 gi|257473256|gb|ACV51375.1| excinuclease ABC, B subunit [Atopobium parvulum DSM 20469]
          Length = 746

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/688 (51%), Positives = 471/688 (68%), Gaps = 38/688 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            Q+ + + P+GDQP AI +L +GI    + Q LLGVTGSGKTF+MAK IE + RP ++M 
Sbjct: 30  LQVVSPFEPAGDQPQAIEKLAQGIEDGLRYQTLLGVTGSGKTFSMAKTIEKLNRPTLIME 89

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ+ SE K  FP+NAV YFVSYYDYYQPEAYVP++DTYIEK++SINE+++++RH
Sbjct: 90  PNKTLAAQVASEMKELFPNNAVVYFVSYYDYYQPEAYVPQSDTYIEKDASINEEVEKLRH 149

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT SLL R D IVV+SVSCIYGIGS + Y+ +   +     +E+ + +  L+  QY R 
Sbjct: 150 QATSSLLSRRDVIVVASVSCIYGIGSPQDYAGLAPNVDKSVPLERDDFIKDLINVQYDRN 209

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RG FRV GD +++FP + E+   R+  FG+++E ISE   +TG+ +R  + I I+
Sbjct: 210 DYDLQRGMFRVRGDVVDVFPPYAEN-PLRIEFFGDEVESISEVSTVTGEVLREFDAIPIW 268

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT RP +  A+  I EE++ R+ EL++  +LLEAQRL QR  YDLEMLET G C 
Sbjct: 269 PASHYVTERPKITHALTTISEEMEARVKELKENDKLLEAQRLAQRTNYDLEMLETMGYCN 328

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR PGEPP TL +Y P+D +  +DESHVT+PQI GMY GD  RK TL ++
Sbjct: 329 GIENYSRHLDGRAPGEPPYTLIDYFPKDMICIIDESHVTVPQIRGMYEGDRSRKVTLVDH 388

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+    P  I VSATPG +E E      VEQIIRPTGL+DP ++
Sbjct: 389 GFRLPSALDNRPLRFDEFEGRIPQFIYVSATPGDYE-ETVAQQQVEQIIRPTGLLDPKID 447

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+  E+     +  R+L+T LTKRMAEDLT++L +  I+V YMHS+  TL+
Sbjct: 448 VRPVRGQIDDLISEVKERVAKKERVLVTTLTKRMAEDLTDHLLDEGIKVNYMHSDTATLD 507

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR GK DVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQT+GRAAR
Sbjct: 508 RVEIIRDLRQGKIDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNRRSLIQTMGRAAR 567

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S+++AIDET RRRE Q   NK+H I P++VK+ I ++   I    
Sbjct: 568 NASGQVIMYADKITDSMRIAIDETKRRRELQEAFNKEHGIVPKTVKKSITDIAGFIA--- 624

Query: 741 AATTNI------------------SIDAQQLS---------------LSKKKGKAHLKSL 767
            A+ NI                  S++ QQ S               L + + +A L  +
Sbjct: 625 EASENIDKRKRKNGEFYTASNDEDSLEEQQESILEMPAELLTEELQNLPRSEVEAMLSGM 684

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKS 795
             +M  A+ ++++E AA +RD+I  ++S
Sbjct: 685 EAEMAEASASMDYEHAAELRDQIVAIRS 712


>gi|302336092|ref|YP_003801299.1| Excinuclease ABC subunit B [Olsenella uli DSM 7084]
 gi|301319932|gb|ADK68419.1| Excinuclease ABC subunit B [Olsenella uli DSM 7084]
          Length = 771

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/683 (52%), Positives = 471/683 (68%), Gaps = 32/683 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ + Y P+GDQP AIA+L +GI    + Q LLGVTGSGKTF+MAK IEA QRP ++M 
Sbjct: 59  LEVVSPYEPAGDQPKAIARLARGIEDGLRYQTLLGVTGSGKTFSMAKTIEATQRPTLIME 118

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ+ SE K  FPHNAV YFVSYYDYYQPEAYVP+TDTYIEK++SINE+++++RH
Sbjct: 119 PNKTLAAQVASEMKELFPHNAVVYFVSYYDYYQPEAYVPQTDTYIEKDASINEEVEKLRH 178

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT SLL R D IVV+SVSCIYGIGS + Y+ +   +     +E+ +L+  L+  QY R 
Sbjct: 179 QATSSLLSRRDVIVVASVSCIYGIGSPQDYAGLAPNVDKSVPLERDDLIRELIDIQYDRN 238

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGTFRV GD+I++FP + E+   RVS FG+++E I+E   +TG+ +R  + I I+
Sbjct: 239 DYDLSRGTFRVRGDTIDVFPPYAEN-PLRVSFFGDEVELIAEIDNVTGEIVREFDAIPIW 297

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT RP +  A+K I EEL+ R+ EL+    LLEAQRL QR  YDLEMLET G C 
Sbjct: 298 PASHYVTERPKITHAIKTISEELEGRVKELKDNDMLLEAQRLSQRTGYDLEMLETMGYCS 357

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL +Y P+D L  +DESHVT+PQI GMY GD  RK TL E+
Sbjct: 358 GIENYSRHMDGRKAGEPPYTLIDYFPKDMLCIIDESHVTVPQIRGMYEGDRSRKVTLVEH 417

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+       + VSATPG +E E      VEQ+IRPTGL+DP VE
Sbjct: 418 GFRLPSALDNRPLRFDEFEQRIGQFVYVSATPGDYE-EGVSQQEVEQVIRPTGLLDPKVE 476

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+ +EI     +  R+L+T LTKRMAEDLT++L +  ++V YMHS+  TL+
Sbjct: 477 VRPVRGQIDDLIEEIKDRTSRKERVLVTTLTKRMAEDLTDHLLDEGVKVNYMHSDTATLD 536

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR+GK  VLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQT+GRAAR
Sbjct: 537 RVEIIRDLRIGKISVLVGINLLREGLDIPEVSLVAILDADKEGFLRNRRSLIQTMGRAAR 596

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YADT+T S++ A+ ET RRR  Q  +N +H I P+++++ I +V     +ED
Sbjct: 597 NAQGEVIMYADTVTDSMREAMGETARRRSIQEAYNSEHGIVPKTIRKSITDVAS--FIED 654

Query: 741 AATT---------------------------NISIDAQQL-SLSKKKGKAHLKSLRKQMH 772
           A  T                            I   A++L +L  ++    + +L  +M 
Sbjct: 655 ADKTLSTKSREGGEFFTAPAGEGPTGTEHERTIDSVARELAALPPEEAGKVMGALEDEMV 714

Query: 773 LAADNLNFEEAARIRDEIKRLKS 795
            A+ +++FE AA++RD+I  L+ 
Sbjct: 715 QASVDMDFERAAQLRDQIVELRG 737


>gi|282891380|ref|ZP_06299881.1| hypothetical protein pah_c052o010 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498732|gb|EFB41050.1| hypothetical protein pah_c052o010 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 669

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/655 (52%), Positives = 463/655 (70%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++ + P GDQP AI ++++GI   +K Q+LLG+TGSGKT+TMA V+  +QRP +V+A
Sbjct: 5   FQLESHFPPGGDQPQAIEKIVQGITEGKKSQVLLGITGSGKTYTMANVVAQVQRPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFPHNA+EYFVSYYDYYQPEAY+ RTDTYIEK+ +IN++ID+MR 
Sbjct: 65  HNKTLAAQLYQEFKSFFPHNAIEYFVSYYDYYQPEAYIARTDTYIEKDMAINDRIDKMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D ++V+SVSCIYG+G+ E Y  M + L  G +  + ++L  LV+ QY R 
Sbjct: 125 SATRSLLERRDVLIVASVSCIYGLGTPEYYRGMNLTLATGQNRRRDDILLHLVEMQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV GD +EIFP++ ED++ RV  FG+DIE ISE  PLTG+  + ++ I IY
Sbjct: 185 DYDFSRATFRVRGDVLEIFPAYEEDLSIRVEFFGDDIERISEIDPLTGKVRQRIQQITIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SH+VTP      A++ IK EL  R+   EK   L+E QR++QR  +D+EM+   G C+
Sbjct: 245 PSSHHVTPEEVRWHALETIKAELAERMEFFEKNNLLIERQRIQQRTQHDMEMIREIGFCK 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ + R PG+PPP L +Y P D LL +DESH T+PQ+  MY GD  RKA L ++
Sbjct: 305 GIENYSRHFSQRQPGDPPPCLIDYFPSDFLLIIDESHQTLPQMRAMYNGDKARKAALVDF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE        + VSATP  WE+ + +G IVEQ+IRPTGL+DP +E
Sbjct: 365 GFRLPSAYDNRPLKFEESYSHFHQVVYVSATPAEWEVAEAEGEIVEQVIRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D   EI    ++G R+L+T LTKR+AE+LT YL E +++ +Y+HS++ TLE
Sbjct: 425 VRPADGQVDDSLAEIRTHVEKGGRVLVTTLTKRLAEELTTYLTELDVKAKYLHSDIDTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +II+DLR G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQT GRAAR
Sbjct: 485 RSQIIQDLRAGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTCGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILLE 739
           N   +VI+YA+ ITK+I+  +D T  RR  Q E+N +H I P++VK +I  +++P I+ E
Sbjct: 545 NSEGRVIMYANKITKAIRHTLDITESRRVMQHEYNLEHGITPRTVKREISPLVEPDIIYE 604

Query: 740 DAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           D       +   +     L+  + +  ++     M  AA  + FE+AA  RD +K
Sbjct: 605 DQTEVKAHLKVAEGHHDYLTLDEIRLKVRENENLMKKAAKEMQFEDAAHFRDLMK 659


>gi|227874334|ref|ZP_03992519.1| excision endonuclease subunit UvrB [Oribacterium sinus F0268]
 gi|227839822|gb|EEJ50267.1| excision endonuclease subunit UvrB [Oribacterium sinus F0268]
          Length = 667

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/658 (52%), Positives = 463/658 (70%), Gaps = 7/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQPAAI +L+KG+    + + LLGVTGSGKTFTMA VI+ +Q+P ++++
Sbjct: 10  FKLHSDYAPMGDQPAAIEKLVKGLQEGNQFETLLGVTGSGKTFTMANVIQQIQKPTLIIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S INE+ID++R+
Sbjct: 70  HNKTLAAQLYSEMKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSDINEEIDKLRN 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +L ER D +VV+SVSCIYG+G+   Y  M + L+ G   ++ EL+ +LV+ QY R 
Sbjct: 130 SAMAALSERKDVVVVASVSCIYGLGAPTEYLNMAISLRPGQIRDRDELIKNLVEIQYNRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD ++IFP+   + A+R+  FG++IEEI     LTG+    +E   ++
Sbjct: 190 DMDFRRGTFRVKGDIVDIFPASEGEQAYRIQFFGDEIEEIQLIDALTGKGKAKLEHCMVF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + YV P   +  A K I EEL  R+   + E +LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 250 PATPYVIPMEKMKIACKNILEELDERVAYFKSEEKLLEAQRISERTNFDVEMIRETGVCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L    PGEPP TL +Y PED L+ VDESH+++PQI GMY G+  RK TL ++
Sbjct: 310 GIENYTRHLNFAQPGEPPYTLMDYFPEDYLIIVDESHISLPQIRGMYNGNLSRKTTLVDF 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATPG +E E  + +  EQIIRPTGL+DP + 
Sbjct: 370 GFRLPSALDNRPLNFSEFEGKINQMLFVSATPGEYEAEH-EILRAEQIIRPTGLLDPEIV 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI+    +G +IL+T LTK+MAEDLT+YL E  +RV+Y+HS++ TLE
Sbjct: 429 VRPTKGQIDDLLSEIHKETDKGNKILVTTLTKKMAEDLTKYLQEAKVRVKYLHSDIDTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  IIRD+RL KFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQ +GRAAR
Sbjct: 489 RAAIIRDMRLDKFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQIVGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV--IDPILL 738
           N    VI+YADTIT S++  IDET RRR  Q E+NK H I P ++K+ + ++  I  +L 
Sbjct: 549 NSEGHVIMYADTITDSMRRTIDETKRRRSIQEEYNKAHGITPTTIKKAVRDLIAISKVLR 608

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +D       ++    S+SK + +  ++   K+M  AA  LNFE+AA  RD+I+ L+ S
Sbjct: 609 DDEKGFQKDVE----SMSKAEIEKMIREFSKKMRAAAAELNFEDAALYRDKIQELRDS 662


>gi|260578003|ref|ZP_05845926.1| excinuclease ABC, subunit B [Corynebacterium jeikeium ATCC 43734]
 gi|258603830|gb|EEW17084.1| excinuclease ABC, subunit B [Corynebacterium jeikeium ATCC 43734]
          Length = 707

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/678 (52%), Positives = 476/678 (70%), Gaps = 25/678 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI +L + +   E+  +L+G TG+GK+ T A +IE  QRP +VMA
Sbjct: 28  FEVISDYKPAGDQPKAIEELHQRLDRGERDVVLMGATGTGKSATAAWLIEKEQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E ++  P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH
Sbjct: 88  PNKTLAAQLANELRSLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VVSSVSCIYG+G+ +SY    V LK+ + VE+   L  LV  QY R 
Sbjct: 148 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLKVDEEVERDRFLRLLVDIQYSRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+++I P++ E++A RV  FG+DI+ +   +PLTG  IR V+ ++I+
Sbjct: 208 DVAFTRGTFRVKGDTVDIIPAY-EELAVRVEFFGDDIDALYYIHPLTGDVIRQVDELRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  AM+ IKEEL  RL ELE  G+LLEAQRL  R  YDLEM++  G   
Sbjct: 267 PATHYVAGPERMEKAMQAIKEELAQRLEELENRGKLLEAQRLRMRTEYDLEMIQQVGFTS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM+ GD  RK  L E+
Sbjct: 327 GIENYSRHIDGRAAGSAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEH 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE++  +   + +SATPG +E+   QG  VEQ+IRPTGLVDP VE
Sbjct: 387 GFRLPSALDNRPLTWEEFDDRKGQCVYMSATPGDYEIAAAQGEYVEQVIRPTGLVDPKVE 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ ++I    ++  R+L+T LTKRMAEDLT+YL E  ++VRYMHS++ TL+
Sbjct: 447 VRPTEGQIDDLIEQIRQRTEKNERVLVTTLTKRMAEDLTDYLLEHGVKVRYMHSDIDTLK 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-LE 739
           NV+ +VI+YAD +T S+Q AIDET RRR KQ+ +N++H I+PQ +++KI +++D +  LE
Sbjct: 567 NVSGEVIMYADKVTDSMQYAIDETERRRAKQIAYNEEHGIDPQPLRKKIADILDQVAELE 626

Query: 740 DAATTNISIDAQQLSLSKKKGKAH-----------------------LKSLRKQMHLAAD 776
             +  + +  +   S +  +G++                        ++ + +QM  AA 
Sbjct: 627 AESGVDAAGGSGAESSAGGRGESPEADWALVRGSSDEPMARPQLEKLIQEMTEQMKSAAK 686

Query: 777 NLNFEEAARIRDEIKRLK 794
            L FE A R+RDEI  LK
Sbjct: 687 ELKFELAGRLRDEIADLK 704


>gi|225568545|ref|ZP_03777570.1| hypothetical protein CLOHYLEM_04622 [Clostridium hylemonae DSM
           15053]
 gi|225162773|gb|EEG75392.1| hypothetical protein CLOHYLEM_04622 [Clostridium hylemonae DSM
           15053]
          Length = 660

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/654 (51%), Positives = 469/654 (71%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI  L+KG     + Q LLGVTGSGKTFTMA VI+ + +P +++A
Sbjct: 4   FNLVSEYSPTGDQPQAIEALVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLNKPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID++RH
Sbjct: 64  HNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D ++++SVSCIYG+GS   Y +M++ L+ G   ++ +++  L+  QY R 
Sbjct: 124 SATAALSERRDVVIIASVSCIYGLGSPIDYQEMVISLRPGMIKDRDDIIRKLIDIQYDRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGTFRV GD +E+ P+  +    R+  FG+++E I+E   LTG+    +  I I+
Sbjct: 184 EMDFKRGTFRVRGDVLEVIPAMNDCDVIRIEFFGDEVERITEVDALTGEIKNELNHIAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  + ++  A+K I+ EL+ ++   + +G+LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 244 PASHYVVSKESMERAVKEIEVELEEQIQYFKSKGKLLEAQRISERTNFDIEMMRETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PG+PP TL +Y P+D ++ +DESH T+PQI GMY GD  RK+TL +Y
Sbjct: 304 GIENYSRHLTGLAPGQPPHTLIDYFPDDFIMMIDESHKTVPQIGGMYHGDQSRKSTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       + VSATPG +E E  + +  EQ+IRPTGL+DP VE
Sbjct: 364 GFRLPSAKDNRPLSFEEFEGKLNQVMFVSATPGRYEAEH-ELLRAEQVIRPTGLLDPEVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N    +  +IL+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ TLE
Sbjct: 423 VRPVEGQIDDLVGEVNREVAKKNKILITTLTKRMAEDLTDYMRELGIRVKYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RTEIVRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSEVSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S++LA++ET RRR+ Q+++N++H I PQ++++ + ++I   + + 
Sbjct: 543 NSEGHVIMYADKVTDSMRLALEETKRRRQIQMKYNEEHGITPQTIQKAVRDLIS--ISKK 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            AT  + ++    S+S+K+    +K + K+M  AA  LNFE AA +RD++  LK
Sbjct: 601 VATEEMRLEKDPESMSRKELDKLIKEVTKRMKTAAAELNFEAAAELRDKLVELK 654


>gi|194015177|ref|ZP_03053793.1| excinuclease ABC, B subunit [Bacillus pumilus ATCC 7061]
 gi|194012581|gb|EDW22147.1| excinuclease ABC, B subunit [Bacillus pumilus ATCC 7061]
          Length = 661

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/656 (53%), Positives = 477/656 (72%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI +L++GIH  ++ Q LLG TG+GKTFT++ +I+ + +P +V+A
Sbjct: 5   FELVSNYQPQGDQPKAIEKLVEGIHQGKQHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y ++++ L+    +E+ +LL  LV  QY R 
Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYRELVLSLRTEMEIERNQLLRKLVDIQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ + + E + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I++EL+ +L +L    +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMEKAIINIEQELEEQLEKLRDNEKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D ++ VDESHVTIPQI  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPSGSTPYTLLDYFPDDFMIVVDESHVTIPQIRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       + VSATPG +ELE+    +VEQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLTFDEFEKHINHIVHVSATPGPYELEKTPE-VVEQIIRPTGLLDPIIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+   ++  R+L+T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIHARVEKNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +TKS+ +AI ET RRRE+Q  +N+K+ I PQ++ +KI + I    + +
Sbjct: 544 NSEGRVIMYADKMTKSMDIAIQETKRRREQQEAYNEKYGITPQTIHKKIRDAIKATKIHE 603

Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +    +  A +LS +SKK+ +  ++ +  +M  AA  L+FE+AA +RD +  LK+
Sbjct: 604 ESEEYETNAAPKLSKMSKKEREKVIEKVEMEMKDAAKALDFEKAAELRDLLLELKA 659


>gi|323360118|ref|YP_004226514.1| helicase subunit of the DNA excision repair complex [Microbacterium
           testaceum StLB037]
 gi|323276489|dbj|BAJ76634.1| helicase subunit of the DNA excision repair complex [Microbacterium
           testaceum StLB037]
          Length = 689

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/678 (51%), Positives = 479/678 (70%), Gaps = 22/678 (3%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           ++ +  F++ ++Y PSGDQP AIA L   I++ E   +LLG TG+GK+ T A ++E +QR
Sbjct: 4   TRSVRPFEVISEYSPSGDQPQAIADLAARINAGETDVVLLGATGTGKSATTAWLVEQVQR 63

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+A NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN +
Sbjct: 64  PTLVLAHNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINAE 123

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++R+RHS T SLL R D +VVS+VSCIYG+G+ E Y + +V L++G+  ++  L+   + 
Sbjct: 124 VERLRHSTTNSLLSRRDVVVVSTVSCIYGLGAPEEYLRAMVALQVGERYDRDALIRKFIS 183

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D+   RG FRV GD+IEI P + E+ A R+ MFG++IE +   +PLTG  I  +
Sbjct: 184 MQYNRNDVDFSRGNFRVRGDTIEIIPVY-EEYAIRIEMFGDEIEALYTLHPLTGDVIEKM 242

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           +++ I+  SHYV    T+  A+  I+ EL+ RL E E +G+LLEAQRL  R T+DLEML+
Sbjct: 243 DSVPIFPASHYVAGTETVQRAIGTIEHELEHRLKEFESQGKLLEAQRLRMRTTFDLEMLQ 302

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSR++ GR  GEPP TL ++ P+D LL +DESHVT+PQI  MY GD  RK
Sbjct: 303 QLGFCSGIENYSRHMDGRVAGEPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRK 362

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL E+GFRLPS MDNRPLR++E+      T+ +SATPG +E+    G+ VEQIIRPTGL
Sbjct: 363 RTLVEHGFRLPSAMDNRPLRWDEFKERIGQTVYLSATPGRYEMGIADGV-VEQIIRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           VDP + ++ ++ Q++D+ +EI +  ++  R+L+T LTK+MAE+LT++L E  +RVRY+HS
Sbjct: 422 VDPEIIVKPSKGQIDDLLEEIRVRVERDERVLVTTLTKKMAEELTDFLGEHGVRVRYLHS 481

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +V TL R+E++ +LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQT
Sbjct: 482 DVDTLRRVELLTELRAGVYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQT 541

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARNV+ +V +YAD IT S++ AIDET RRREKQ+ +NK+H I+PQ +++KI ++ +
Sbjct: 542 IGRAARNVSGEVHMYADKITDSMRNAIDETERRREKQVAYNKEHGIDPQPLRKKIADITE 601

Query: 735 PILLEDAATTNISIDAQQLSLSKKK--------------GKAHLKS----LRKQMHLAAD 776
             +L   AT    + A+     K K              G   L+S    L +QM  AA 
Sbjct: 602 --VLNREATDTKKLLARNDKAGKGKSPTPQLRRTGIAAEGADQLESTIADLTQQMLAAAA 659

Query: 777 NLNFEEAARIRDEIKRLK 794
            L FE A R+RDE++ LK
Sbjct: 660 ELKFELAGRLRDEVQDLK 677


>gi|237740540|ref|ZP_04571021.1| excinuclease ABC subunit B [Fusobacterium sp. 2_1_31]
 gi|229422557|gb|EEO37604.1| excinuclease ABC subunit B [Fusobacterium sp. 2_1_31]
          Length = 663

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/651 (52%), Positives = 472/651 (72%), Gaps = 4/651 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ ++Y P GDQP AI  ++K I    K Q+LLGVTGSGKTFT+A VIE +QRPA++
Sbjct: 4   NLFKIHSEYKPMGDQPTAIESIVKNIERGVKDQVLLGVTGSGKTFTIANVIERLQRPALI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID++
Sbjct: 64  IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     +++KEL+  L+  +Y+
Sbjct: 124 RNAATAALIHRRDVIIVASVSSIYGLGSPDTYRKMTIPIDKQTGIQRKELMKKLIALRYE 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377
           R DI   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQKI+ N+E I
Sbjct: 184 RNDIAFERGKFRIKGDVIDIYPSYMNN-GYRLEYWGDDLEEISEINTLTGQKIKKNLERI 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + Y+T     +  ++ IK++L++ +   E E +LLEAQRL QR  YDLEM+   G
Sbjct: 243 VIYPATQYLTADDDKDRIIEEIKDDLRVEVKSFEDEKKLLEAQRLRQRTEYDLEMINEIG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSRYL+G+ PGE P TLFEY P+D LLF+DESH+T+PQ+ GMY GD  RK  L
Sbjct: 303 YCKGIENYSRYLSGKRPGETPDTLFEYFPKDFLLFIDESHITVPQVRGMYNGDRARKEAL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E GFRL + +DNRPL+FEE+      T+ +SATPG +E+E     I EQ+IRPTG+VDP
Sbjct: 363 VENGFRLKAALDNRPLKFEEFREKSNQTVFISATPGDFEIEVSDNNIAEQLIRPTGIVDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR  + QV+D+ DEI     +  R+L+T LTK++AE+LTEY  E  ++V+YMHS++ 
Sbjct: 423 EIEIRPTKNQVDDLLDEIRKRVAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTIGR
Sbjct: 483 TLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  +NI+P+S+ ++I E  D I 
Sbjct: 543 AARNVEGRVILYADIMTDSMKEAIIETERRRKIQKEYNAYNNIDPKSIVKEIAE--DLIN 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           L+         + +++  SK   +  +  L K++    + L+FE+A  +RD
Sbjct: 601 LDYGIEDKKFENDKKVFRSKADIEKEITKLEKKIKKLVEELDFEQAIVLRD 651


>gi|57866394|ref|YP_188019.1| excinuclease ABC subunit B [Staphylococcus epidermidis RP62A]
 gi|251810192|ref|ZP_04824665.1| excinuclease ABC subunit B [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875661|ref|ZP_06284532.1| excinuclease ABC, B subunit [Staphylococcus epidermidis SK135]
 gi|293368220|ref|ZP_06614849.1| excision endonuclease subunit UvrB [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|71153395|sp|Q5HQX0|UVRB_STAEQ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|57637052|gb|AAW53840.1| excinuclease ABC, B subunit [Staphylococcus epidermidis RP62A]
 gi|251806244|gb|EES58901.1| excinuclease ABC subunit B [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295688|gb|EFA88211.1| excinuclease ABC, B subunit [Staphylococcus epidermidis SK135]
 gi|291317643|gb|EFE58060.1| excision endonuclease subunit UvrB [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329736811|gb|EGG73076.1| excinuclease ABC, B subunit [Staphylococcus epidermidis VCU028]
 gi|329737999|gb|EGG74223.1| excinuclease ABC, B subunit [Staphylococcus epidermidis VCU045]
          Length = 661

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/659 (53%), Positives = 468/659 (71%), Gaps = 10/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++++ P GDQP AI +++ G++  ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKLKSEFEPQGDQPQAIQKIVDGVNEGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +E+ ELL  LV  QY R 
Sbjct: 127 SATSSLFERDDVIIIASVSCIYGLGNPEEYKNLVVSVRVGMEMERSELLRKLVDVQYSRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ IR  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVIREREHFTIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQI GMY GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLIDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP ++
Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYELEHTDE-MVEQIIRPTGLLDPKID 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTENQIDDLLSEIQDRVDKDERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +D +VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSDRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S+Q AIDET RRRE Q+ HNK+H I P+++ +KI +VI   +  D
Sbjct: 546 NDKGEVIMYADKITDSMQYAIDETQRRREIQIAHNKEHGITPKTINKKIHDVISATVESD 605

Query: 741 AATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                     QQ  L KK  K      ++++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 606 ETNQQ-----QQTELPKKMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKA 659


>gi|124021794|ref|YP_001016101.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9303]
 gi|189037987|sp|A2C5S6|UVRB_PROM3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|123962080|gb|ABM76836.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str. MIT
           9303]
          Length = 679

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/671 (52%), Positives = 467/671 (69%), Gaps = 19/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           + ++  Y P GDQP AIA+L++G++  ++ Q LLG TG+GKTFT+A +I    RPA+V+A
Sbjct: 4   YHLKAPYSPKGDQPTAIARLVEGVNQGQRYQTLLGATGTGKTFTIANLIAQTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF+ FFP N+VEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 64  HNKTLAAQLCNEFREFFPDNSVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ERND IVV+S+SCIYG+G    Y +  V+ K+G+++  +  L  LV  QY R 
Sbjct: 124 SATRSLFERNDVIVVASISCIYGLGIPSEYLKAAVKFKVGETLNLRSSLRELVDNQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I RG FRV GD +EI P++ ED   R+ +FG+++E I    P TG+ ++++E I IY
Sbjct: 184 DFDITRGRFRVRGDVLEIGPAY-EDRLVRIELFGDEVEAIRYLDPTTGEILQSLEAINIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  LN A++ I++EL+ RL  L ++G+LLEAQRLEQR  YDLEML   G C 
Sbjct: 243 PAKHFVTPKERLNVAVQAIRDELRERLQVLNEQGKLLEAQRLEQRTAYDLEMLREVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L GR+ G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L E+
Sbjct: 303 GVENYARHLAGRSAGTPPECLIDYFPDDWLLVVDESHVTCSQLKAMYNGDQARKKVLIEH 362

Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           GFRLPS  DNRPL+ EE W   R  T+ VSATPG WEL Q  G + EQ+IRPTG++DP V
Sbjct: 363 GFRLPSAADNRPLKSEEFWRKAR-QTVFVSATPGDWELTQSDGQLAEQVIRPTGVLDPLV 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + QV+D+  EI + A++  R+L+T LTKRMAEDLT+YL E ++RVRY+HSE+ ++
Sbjct: 422 EVRPTQGQVDDLLAEIRIRAKKQERVLITTLTKRMAEDLTDYLAENDVRVRYLHSEIHSI 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LV ILDADKEGFLR++ SLIQTIGRAA
Sbjct: 482 ERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAERSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-- 737
           R+V+   +LYAD +T S+  AI ET RRRE Q  +N+ + I P+   ++    I   L  
Sbjct: 542 RHVDGMALLYADNLTDSMARAISETERRREIQKAYNELNGIVPRPAGKRASNSILSFLEL 601

Query: 738 -------LEDAATTNI---SIDA----QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
                   +DA    I   ++DA    Q   L+       +  L  +M  AA NLNFEEA
Sbjct: 602 SRRLQTDGKDADLVQITGRAVDALDSDQDSGLALDALPELIDQLETKMKEAAKNLNFEEA 661

Query: 784 ARIRDEIKRLK 794
           A +RD IK+ +
Sbjct: 662 ASLRDRIKKFR 672


>gi|123969390|ref|YP_001010248.1| excinuclease ABC subunit B [Prochlorococcus marinus str. AS9601]
 gi|123199500|gb|ABM71141.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str.
           AS9601]
          Length = 679

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/670 (51%), Positives = 468/670 (69%), Gaps = 17/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++Q  Y P+GDQP AI +L+KG+++ ++ Q LLG TG+GKTFT+A VI+   RPA+V+A
Sbjct: 4   YKLQAPYEPNGDQPEAIKKLVKGVNNGKQFQTLLGATGTGKTFTIANVIQQTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G S+  +  L SLV+ QY R 
Sbjct: 124 SATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFEVGKSINLRSSLRSLVENQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI I RG FR+ GD +EI P++ ED   R+ +FG+++E I    P TG+ + ++E + +Y
Sbjct: 184 DIEITRGRFRIKGDVLEIGPAY-EDRLIRIELFGDEVEAIRYVDPTTGEILESLEQVSVY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L +A+  I+ ELK +L +   EG+LLEAQRLEQR  YDLEML+  G C 
Sbjct: 243 PAKHFVTPKERLESAISAIRSELKTQLDKFTYEGKLLEAQRLEQRTKYDLEMLKEVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L+GR  G PP  L +Y P+D LL VDESHVT PQ+  MY GD  RK  L ++
Sbjct: 303 GVENYARHLSGREEGSPPECLIDYFPKDWLLVVDESHVTCPQLHAMYNGDQSRKKVLIDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+      T+ +SATPG WEL+QC G  +EQ+IRPTG++DP ++
Sbjct: 363 GFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWELDQCDGEFIEQVIRPTGVLDPVID 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  Q+ED+  EI + A++  R+L+T LTKRMAEDLT++L E  +RVRY+HSE+ ++E
Sbjct: 423 VRPSEGQIEDLLSEIRIRAEKNQRVLVTTLTKRMAEDLTDFLSENKVRVRYLHSEIHSIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII+DLR+G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           +V    +LYAD  T S++ AI ET RRR  Q ++N+ + I P+   +KI   I   L   
Sbjct: 543 HVEGVALLYADNFTDSMKRAISETDRRRTIQKKYNQVNGITPKPAGKKIENSILSFLELS 602

Query: 738 --LEDAATT----NISIDAQQLSLSKKKGKAHLKSLRK-------QMHLAADNLNFEEAA 784
             L+    +    NI  +     LS    +  L+ L         +M  AA  LNFEEAA
Sbjct: 603 RKLDAGGLSKDLINIVNNKTDAILSSSDNQCLLEELPDLIEKLEIKMKDAAKELNFEEAA 662

Query: 785 RIRDEIKRLK 794
            +RD IK+L+
Sbjct: 663 NLRDRIKKLR 672


>gi|288560344|ref|YP_003423830.1| excinuclease ABC B subunit UvrB [Methanobrevibacter ruminantium M1]
 gi|288543054|gb|ADC46938.1| excinuclease ABC B subunit UvrB [Methanobrevibacter ruminantium M1]
          Length = 651

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/655 (54%), Positives = 463/655 (70%), Gaps = 10/655 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y P GDQP AI  L  GI      Q LLGVTGSGKT+TMA +I+ +Q+P ++++
Sbjct: 4   FKLKSPYKPLGDQPQAIESLSNGIKEGFHEQTLLGVTGSGKTYTMANIIQNVQKPTLIIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+I+KE+SINE ID MRH
Sbjct: 64  HNKTLAAQLYEEFKVFFPDNAVEYFVSYYDYYQPEAYVPRTDTFIDKEASINEDIDIMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLL R+D IVVSSVSCIYGIGS E Y +    + +GD  ++ ++L  L+  QY+R 
Sbjct: 124 SATQSLLSRDDVIVVSSVSCIYGIGSPEDYGEFAFSINVGDIYDRGDILRKLIFMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD IEI P H      R+ +FG++I+ IS   P+TG +  ++    I+
Sbjct: 184 DIAFERGQFRVRGDVIEINPVH-GTPPIRIELFGDEIDAISLINPVTGMREESINRYVIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V     ++ A+K I+ EL+ RL EL  EG+ LEAQRLEQR  +DLEML   G C 
Sbjct: 243 PAKHFVVGADRMDQALKDIEAELQSRLNELNLEGKYLEAQRLEQRTRFDLEMLREMGYCP 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L+GRN G+ P +L +Y P+D L  +DESHVT+PQI GMY GD  RK TL  Y
Sbjct: 303 GIENYSMHLSGRNWGDMPYSLLKYFPDDYLTIIDESHVTVPQIRGMYNGDRARKETLVNY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPLRF+E+   +   + VSATPG +EL + +  +VEQIIRPTGLVDP + 
Sbjct: 363 GFRLPSAKENRPLRFDEFEASQNQVLYVSATPGPYELSRSKN-VVEQIIRPTGLVDPKIT 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + QVED+  E+    +   RIL+T LTKRMAEDLT+Y  +  I+VRY+HSE+ TLE
Sbjct: 422 IRPVKGQVEDLLGEVRRKVEHDQRILVTTLTKRMAEDLTDYYAKIGIKVRYLHSEIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR G+FDVLVG+NLLREGLD+PE GLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RVEIIDDLRRGEFDVLVGVNLLREGLDLPEVGLVAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V++Y D +T S++ A+D T +RR+ Q+ +N+K+NI P++ +  + E      L D
Sbjct: 542 NVDGEVLMYVDEMTDSVRNAVDITNKRRKLQMAYNEKYNITPKTTQRTLKEK----KLAD 597

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            A +   +      + K + K  +K L  +M  AA+NL FE+AA +RD+I  LKS
Sbjct: 598 RAPSRDDLRG----MPKDELKLLIKDLEAEMREAANNLEFEKAASLRDQIVALKS 648


>gi|242242128|ref|ZP_04796573.1| excinuclease ABC subunit B [Staphylococcus epidermidis W23144]
 gi|242234441|gb|EES36753.1| excinuclease ABC subunit B [Staphylococcus epidermidis W23144]
 gi|319401165|gb|EFV89380.1| excinuclease ABC, B subunit [Staphylococcus epidermidis FRI909]
          Length = 661

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/655 (53%), Positives = 470/655 (71%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++++ P GDQP AI +++ G++  ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKLKSEFEPQGDQPQAIQKIVDGVNEGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +E+ ELL  LV  QY R 
Sbjct: 127 SATSSLFERDDVIIIASVSCIYGLGNPEEYKNLVVSVRVGMEMERSELLRKLVDVQYSRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ IR  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVIREREHFTIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKMKVAIQRIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQI GMY GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLIDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP ++
Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYELEHTDE-MVEQIIRPTGLLDPKID 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTENQIDDLLSEIQDRVDKDERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +D +VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSDRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S+Q AIDET RRRE Q+ HNK+H I P+++ +KI +VI   +  D
Sbjct: 546 NDKGEVIMYADKITDSMQYAIDETQRRREIQIAHNKEHGITPKTINKKIHDVISATVESD 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                   +  +  ++KK+ +  ++++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 606 ETNQQQQTELPK-KMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKA 659


>gi|148643639|ref|YP_001274152.1| excinuclease ABC subunit B [Methanobrevibacter smithii ATCC 35061]
 gi|189037982|sp|A5UNK6|UVRB_METS3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|148552656|gb|ABQ87784.1| excinuclease ABC, subunit B, UvrB [Methanobrevibacter smithii ATCC
           35061]
          Length = 655

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/657 (54%), Positives = 464/657 (70%), Gaps = 13/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI  L+ GI+  EK Q LLGVTGSGKTFTMA VIE +Q+P +V++
Sbjct: 4   FKLNSPYKPLGDQPKAINSLVDGINKGEKEQTLLGVTGSGKTFTMANVIEKVQKPTLVIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+I+KESS+NE+ID MRH
Sbjct: 64  HNKTLAAQLYEEFKEFFPDNAVEYFVSYYDYYQPEAYVPRTDTFIDKESSVNEEIDIMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLL R+D IVVSSVSCIYGIGS E Y +    + +GD+ ++ +++  LV  QY+R 
Sbjct: 124 SATQSLLSRDDVIVVSSVSCIYGIGSPEDYGEFAFGIAVGDNYDRSDIIRKLVFMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD IEI P H      RV +FG++I+ IS    +TG+K  +++   I+
Sbjct: 184 DIEFARGHFRVRGDVIEINPVH-GTPPVRVELFGDEIDAISLIDKVTGKKTESLKRYMIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V  +  ++TA++ I +EL  RL E     +LLEAQRLEQR  +D+EML+  G C 
Sbjct: 243 PAKHFVVGQDKMDTAIRNISDELDERLNEFNLSNKLLEAQRLEQRTRFDIEMLQEMGYCP 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS +L+GR  GE P +L +Y PED L  +DESHVT+PQI GMY GD  RK TL E+
Sbjct: 303 GVENYSMHLSGRKWGEKPYSLLKYFPEDYLTIIDESHVTLPQIRGMYNGDRARKETLVEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPLRF+E+       I VSATPG++EL +    IVEQIIRPTGLVDP V 
Sbjct: 363 GFRLPSAKENRPLRFDEFESSINQIIYVSATPGAYELSRSSN-IVEQIIRPTGLVDPEVI 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + QVED+  E+   A++  R+L+T LTK+MAEDLT+Y  +  ++VRYMHSE+ TLE
Sbjct: 422 IRPVKGQVEDLLGEVKKRAKKDERVLVTTLTKKMAEDLTDYYAKIGVKVRYMHSEIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI+I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR++TSLIQTIGRAAR
Sbjct: 482 RIDIVDDLRRGTFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME--VIDPILL 738
           N+N +VI+Y D +T S++ A   T++RR+ Q+++N+KH I P++ K  + +  V + + +
Sbjct: 542 NINGQVIMYVDEMTDSVKNATAITSKRRKIQIKYNEKHGIVPKTTKRALKDKKVAEDLDI 601

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           E    + I  D  +L +S          L   M  AA  L+FE AA +RD+I  LK 
Sbjct: 602 EGTDISKIPKDELRLLIS---------DLENDMKEAAAKLDFERAASLRDQIATLKG 649


>gi|325478234|gb|EGC81353.1| excinuclease ABC, B subunit [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 656

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/662 (53%), Positives = 469/662 (70%), Gaps = 10/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI +L KGI      Q+L GVTGSGKTFTMA +I+ +QRP +V+A
Sbjct: 3   FELNSEYKPRGDQPYAIEKLSKGIEDGAHHQILRGVTGSGKTFTMANIIQNVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL++EFK FFP+NAVEYFVSYYDYYQPEAYV  TDTYI K+SSIN++ID+MRH
Sbjct: 63  HNKTLAYQLFTEFKEFFPNNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G    Y +++V L+ G  +  ++++  L+  QY R 
Sbjct: 123 SATMALFERRDVIIVASVSCIYGLGDPIEYQKLVVSLRPGQEISPEDVMRKLIDVQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFR  GD +++FP+  +  A R   FG++I++ISEF  LTG+    +    IY
Sbjct: 183 DVEFTRGTFRRRGDILDVFPAGFDQKAIRFEFFGDEIDQISEFDSLTGKVTAKISHAYIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T       A+  I+EEL+ RL EL KE +LLEAQRLEQR  YD+EML   G C 
Sbjct: 243 PASHYATSSEKTEKAIVSIEEELEERLAELNKENKLLEAQRLEQRTKYDIEMLREIGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y PED +L VDESHV+IPQ+ GMY GD  RK  L ++
Sbjct: 303 GIENYSRHLSQRPAGSRPYTLIDYFPEDFVLMVDESHVSIPQVGGMYEGDRSRKQNLVDF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L    + VSATPG +E+E+  G +V+QIIRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLKFHEFEKLINQAVYVSATPGPYEMEKTNGKMVDQIIRPTGLLDPLIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ +E++    +  R+L+T LTK+MAEDLT +L E  I+V+Y+HS++KT+E
Sbjct: 423 VRPTENQIDDLIEEVHKTIAKKERVLVTTLTKKMAEDLTTFLQENGIKVKYLHSDIKTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLG+FDVLVGINLLREGLDIPE  L+ ILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RSEIIRELRLGEFDVLVGINLLREGLDIPEVSLITILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+Y D ITKS+Q AIDET RRR+ Q + N+K+ I P ++++ I E+I       
Sbjct: 543 NSEGRVIMYGDKITKSMQKAIDETERRRKIQEDFNEKNGITPTTIRKNIGEII------- 595

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
              T    + +    SK   +A L ++  +M+ AA+ L+FE AA +RD+IK +K +  F 
Sbjct: 596 -QITKKEEEEEIEEFSKDDIEAILINMEAEMYKAAEELDFERAANLRDQIKNMKEN--FT 652

Query: 801 GL 802
           G+
Sbjct: 653 GV 654


>gi|318043042|ref|ZP_07974998.1| excinuclease ABC subunit B [Synechococcus sp. CB0101]
          Length = 669

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/660 (53%), Positives = 455/660 (68%), Gaps = 8/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +Q+   Y P GDQPAAI  L+ G+   E+ Q LLG TG+GKTFT+A VI    RPA+V+A
Sbjct: 5   YQLHAPYSPKGDQPAAIQGLVAGVEGGERYQTLLGATGTGKTFTIANVIAQTGRPALVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 65  HNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G+++  +  L  LV  QY R 
Sbjct: 125 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGETLNLRGSLRELVNNQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ I RG FRV GD +EI P++ ED   R+ +FG+++E I    P TG+ ++++E+I IY
Sbjct: 185 DLEISRGRFRVRGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSLESINIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L  A+K I+ EL+ RL  L ++GRLLEAQRLEQR TYDLEMLE  G C 
Sbjct: 244 PAKHFVTPKERLADAIKAIRSELRERLDVLNEQGRLLEAQRLEQRTTYDLEMLEQVGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L E+
Sbjct: 304 GVENYARHLAGRAAGTPPECLIDYFPDDWLLVVDESHVTCSQLQAMYNGDQSRKQVLIEH 363

Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           GFRLPS  DNRPL+  E W   R  TI VSATPG WE+ Q  G +VEQ+IRPTG++DP V
Sbjct: 364 GFRLPSAADNRPLKGSEFWEKAR-QTIFVSATPGDWEMRQSDGQVVEQVIRPTGVLDPIV 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    QV+D+  EI L A +  R+L+T LTKRMAEDLT+YL E  +RVRY+HSE+ ++
Sbjct: 423 EVRPTEGQVDDLLGEIRLRADKRERVLVTTLTKRMAEDLTDYLAENGVRVRYLHSEIHSI 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEII+DLR G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAA
Sbjct: 483 ERIEIIQDLRNGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-- 737
           R+V    +LYAD +T S+  AI ET RRR  Q  +N+KH I P    ++    I   L  
Sbjct: 543 RHVEGVALLYADNLTDSMDKAITETERRRAIQQSYNEKHGITPTPAGKRAGNSILAFLEV 602

Query: 738 ---LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              L D      +  A+   +        ++ L ++M  AA NL FEEAA +RD IK L+
Sbjct: 603 SRRLNDEQLEQATEQAEHNEVPLDALPELIQQLEEKMKSAAKNLEFEEAANLRDRIKGLR 662


>gi|320104307|ref|YP_004179898.1| Excinuclease ABC subunit B [Isosphaera pallida ATCC 43644]
 gi|319751589|gb|ADV63349.1| Excinuclease ABC subunit B [Isosphaera pallida ATCC 43644]
          Length = 686

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/659 (52%), Positives = 473/659 (71%), Gaps = 5/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ + + P+GDQP AI  L+ GI S +  Q LLGVTGSGKTFTMA VI  + RPA+
Sbjct: 1   MSVFELVSPFPPAGDQPKAIEALVDGIRSGKTHQTLLGVTGSGKTFTMANVIARLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EF+ FFP NAV YFVSYYDYYQPEAY+P+ D YIEK+++IN++I+R
Sbjct: 61  VLSHNKTLAAQLYGEFREFFPRNAVRYFVSYYDYYQPEAYIPQRDIYIEKDAAINDEIER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R +AT +L+ R D +VV+SVS IYG+GS + Y +M + L +GD +++ ELL  LV  QY
Sbjct: 121 LRLAATAALVSRRDVVVVASVSSIYGLGSPDHYKRMTIHLSVGDIIDRDELLLKLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   R  FRV GD +EI+P + E++A+RV +FG+++E ++E  PLTG+ +   + +
Sbjct: 181 ERNDIAFERSKFRVRGDVVEIWPGY-EEIAYRVELFGDEVESLAEIDPLTGKTLLKKKEM 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I    HYV P   +  A+  IK EL+ RL +L+ +G+LLEAQRL  R  YDLEML   G
Sbjct: 240 LIQPAKHYVMPEEKIEAAVTSIKAELEERLKQLQDQGKLLEAQRLAARTRYDLEMLLEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+  GR PGEPP TL +Y P+D+L+F+DESHVTIPQ+ GM+ GDF RK+TL
Sbjct: 300 RCQGIENYSRHFDGRKPGEPPYTLMDYFPKDTLVFIDESHVTIPQVRGMFAGDFSRKSTL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPLRF+EW       I VSATPG +ELE+  G +VEQ+IRPTGLVDP
Sbjct: 360 VEHGFRLPSAIDNRPLRFDEWEAKLGQVIFVSATPGDYELEKSGGEVVEQVIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +  AR QV  +  E    A++G R+L+T LTKR+AEDL+ YL E  ++ +++HSE+ 
Sbjct: 420 KIRVEPARDQVPQLLKECKARAEKGERVLVTTLTKRLAEDLSRYLKEEGLKCKWLHSELD 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER+ I+R+LR G FDVLVG+NLLREGLD+PE  LV ILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 AFERVTILRELREGAFDVLVGVNLLREGLDLPEVSLVCILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR++N++V+LYAD +T S++ A+DET RRR  QL +N +H I P+++ + I   I+  +
Sbjct: 540 AARHINAEVVLYADKVTPSMKRALDETERRRGLQLAYNAEHGITPETIVKAIRRGIEEEI 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                  N ++   +L+    + + +L +L  +M  AA+ L FE AA +RD I  +K++
Sbjct: 600 QARTEARN-AVGRDELT---DQIEDYLAALEAEMLQAAEQLEFERAAELRDRILAVKAA 654


>gi|328957263|ref|YP_004374649.1| UvrABC system protein B [Carnobacterium sp. 17-4]
 gi|328673587|gb|AEB29633.1| UvrABC system protein B [Carnobacterium sp. 17-4]
          Length = 664

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/653 (53%), Positives = 468/653 (71%), Gaps = 7/653 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI +L+KGI + EK Q LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 6   FELVSKYQPSGDQPDAIKKLIKGIEAGEKEQTLLGATGTGKTFTVSNVIKEVNKPTLVIA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEKESS+N++ID++RH
Sbjct: 66  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKESSVNDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D IVV+SVSCIYG+ + E Y   ++ L++G  + + E+L  LV  Q++R 
Sbjct: 126 SATSALLERRDVIVVASVSCIYGLVNPEDYRDHVLSLRVGTEMNRDEMLRRLVDMQFERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIF +  +  A RV  FG++I+ I E   LTG+   +V+ + I+
Sbjct: 186 DIDFQRGRFRVRGDVVEIFLASRDSEAIRVEFFGDEIDRIREVDVLTGEIKADVQHVPIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+V       +A+K I+EEL+ RL  L  E +L+EAQRLEQR  YDLEML   G C 
Sbjct: 246 PATHFVANDEQTRSAIKNIQEELEERLKVLRAEDKLIEAQRLEQRTNYDLEMLLEMGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P TL ++ P+D L+ +DESH+T+ QI GMY GD  RK+ L EY
Sbjct: 306 GIENYSRHMDGRKPGEAPYTLIDFFPDDFLIVIDESHITMSQIRGMYNGDRARKSQLIEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + +SATPG +ELE+   +I EQIIRPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLRLEEFENHVNQIMYISATPGPYELERAPEVI-EQIIRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN   ++  R+ +T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 425 VRPIKGQIDDLIGEINERTEKNERVFITTLTKKMSEDLTDYLKEVGIKVAYLHSEIKTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLG +DVL+GINLLREG+D+PE  LV ILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 485 RTEIIRNLRLGVYDVLIGINLLREGIDVPEVSLVIILDADKEGFLRSERSLVQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N N KVI+YAD IT S++ AI ET RRRE Q E+N+KH I P+++ + I ++I     + 
Sbjct: 545 NENGKVIMYADRITDSMRAAISETERRRETQEEYNEKHGITPKTIIKDIRDLISITSVVK 604

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            ED   + +   A+   +++++    +  +  +M +AA  LNFE+AA IRD I
Sbjct: 605 GEDEGASGLENIAK---MTREQRLELIDGMEVEMKVAAKELNFEKAANIRDMI 654


>gi|329946780|ref|ZP_08294192.1| excinuclease ABC, B subunit [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526591|gb|EGF53604.1| excinuclease ABC, B subunit [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 698

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/677 (52%), Positives = 479/677 (70%), Gaps = 25/677 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AIA+L + + + EK  +LLG TG+GK+ T A ++E +QRP +++ 
Sbjct: 14  FEVISPYSPSGDQPTAIAELTERLRAGEKDIVLLGATGTGKSATTAWLVEQVQRPTLILE 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ+ +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH
Sbjct: 74  PNKTLAAQMAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ + Y   +  L++G  +++ ELL   V  QY R 
Sbjct: 134 SATNSLLTRRDVVVVSSVSCIYGLGTPQEYVDRMTPLEVGQQIDRDELLRRFVTMQYIRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++IE ++  +P+TG  I   E + ++
Sbjct: 194 DIDFTRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIEALATLHPVTGDVIDTAEQVFVF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A++ I+ EL  RL +LE +GRLLEAQRL  R TYDLEML+  G C 
Sbjct: 253 PASHYVAGPERMQKAIEGIETELAERLAQLEHDGRLLEAQRLRMRTTYDLEMLQQIGMCS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR  G PP TL +Y PED LL +DESHVT+PQI  M+ GD  RK TL ++
Sbjct: 313 GIENYSLHIDGRETGTPPNTLLDYFPEDFLLVIDESHVTVPQIGAMHEGDASRKRTLVDH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+      T+ +SATPG +E ++  G+ VEQIIRPTGLVDP V 
Sbjct: 373 GFRLPSALDNRPLTFAEFEDRVGQTVYLSATPGDYETQRSDGV-VEQIIRPTGLVDPKVV 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ +E+    ++  RIL+T LTKRMAEDLT YL ER +RV Y+HS+V TL 
Sbjct: 432 VKPTEGQIDDLLEEVRTRVEREERILVTTLTKRMAEDLTTYLAERGVRVEYLHSDVDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR+G+FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 492 RVELLRELRMGRFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YADTIT ++  AI+ET RRR KQL +N +H I+PQ +++KI +V D +  ED
Sbjct: 552 NVSGEVHMYADTITPAMAEAIEETERRRTKQLTYNTEHGIDPQPLRKKIADVTDMLARED 611

Query: 741 AATTNI-----------SIDAQQLSLS------KKKGKAH------LKSLRKQMHLAADN 777
             T ++           S+ A++   +      K  G A       +  L +QMH AA++
Sbjct: 612 VDTADLLAGGYRGHEDSSVRARRKHAAEATVREKLAGAAQGDLVELINELTQQMHAAAED 671

Query: 778 LNFEEAARIRDEIKRLK 794
           L+FE AAR+RDEI+ LK
Sbjct: 672 LHFELAARLRDEIQDLK 688


>gi|315225699|ref|ZP_07867506.1| excision endonuclease subunit UvrB [Capnocytophaga ochracea F0287]
 gi|314944362|gb|EFS96404.1| excision endonuclease subunit UvrB [Capnocytophaga ochracea F0287]
          Length = 665

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/665 (52%), Positives = 469/665 (70%), Gaps = 17/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ P+GDQP AI QL+KGI   +K Q+LLGVTGSGKTFT+A V+E +QRP +V+A
Sbjct: 3   FNIVSDFAPTGDQPQAIDQLVKGIERDDKYQVLLGVTGSGKTFTIANVVERIQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P T TYIEK+ SIN++I+++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYIPSTGTYIEKDLSINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T +LL  R D +VV+SVSC+YGIG+   + + ++ LK GD + + +L+  LV+  Y R
Sbjct: 123 STTSALLSGRRDVLVVASVSCLYGIGNPVEFQKNVITLKQGDILPRTKLMHRLVQSLYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                  G FR+ GD +++FP + +D A+R+  FG++IEEI +F P T   + + +++ I
Sbjct: 183 TTAEFRHGNFRIKGDVLDVFPGY-DDNAFRIHFFGDEIEEIEQFDPTTNHVLDHYQSLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+++L  ++   E  G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDILQKAIWNIQQDLVKQVEFFEALGKPLEAKRLKERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ +DESHVT+ Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLIDYFPDDFLMVIDESHVTVSQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL+Q QG+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQQTQGVYVEQVIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  RIL+T LTKRMAE+LT+YL    IR RY+HS+V TL
Sbjct: 422 EVRPSANQIDDLVEEIQLRTEKDERILVTTLTKRMAEELTKYLTRIGIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RNVN K I+YAD IT S+Q  ID+T  RREKQ+ +NK HNI PQ + +KI   +      
Sbjct: 542 RNVNGKAIMYADKITDSMQRTIDDTNYRREKQMNYNKAHNITPQPLHKKIENSLSKSPVT 601

Query: 734 ----DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
               DP   E  A      +AQ + LS K+ +  +K  RK M +AA  L+F +AA+ RDE
Sbjct: 602 EFHYDPSFKERTAA-----EAQSVYLSAKELEKKIKETRKLMEVAAKELDFVKAAQYRDE 656

Query: 790 IKRLK 794
           +K+L+
Sbjct: 657 LKKLQ 661


>gi|154506003|ref|ZP_02042741.1| hypothetical protein RUMGNA_03545 [Ruminococcus gnavus ATCC 29149]
 gi|153793502|gb|EDN75922.1| hypothetical protein RUMGNA_03545 [Ruminococcus gnavus ATCC 29149]
          Length = 666

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/654 (53%), Positives = 473/654 (72%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++  Y P+GDQP AI QL+KG     + Q LLGVTGSGKTFTMA VIE +Q+P +V+A
Sbjct: 9   FILKAPYKPTGDQPQAIEQLVKGFKEGNQCQTLLGVTGSGKTFTMANVIEQLQKPTLVIA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAYVP +DTYI K+S+IN++ID++R 
Sbjct: 69  HNKTLAAQLYGEFKEMFPDNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSAINDEIDKLRL 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y  M++ L+ G   ++ E+++ L++ QY R 
Sbjct: 129 SATMALAERRDVIIVASVSCIYGLGSPVDYQNMVISLRPGMIKDRDEVVAKLIEIQYDRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +E+ P++  DVA R+  FG++++ I+E   LTG+    ++ + I+
Sbjct: 189 DMDFHRGTFRVRGDVLEVIPAYESDVAIRIEFFGDEVDRITEVDILTGEIKDELKHVAIF 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  +  +N A+K I+EEL+ R+ E +++ +LLEAQR+ +R  +D+EM++ TG C 
Sbjct: 249 PASHYVVDKENINRAVKAIEEELEERVKEFKRQDKLLEAQRIAERTNFDIEMMKETGFCS 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L G  PG+ P TL +Y P+D ++ +DESH TIPQI GMY GD  RK+TL +Y
Sbjct: 309 GIENYSRHLAGLAPGQAPYTLIDYFPDDFVIMIDESHKTIPQIGGMYSGDQSRKSTLVDY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       + VSATPG +E E+ + +  EQ+IRPTGL+DP VE
Sbjct: 369 GFRLPSAKDNRPLNFEEFESKINQVLFVSATPGVYE-EEHELLRAEQVIRPTGLLDPEVE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS+V TLE
Sbjct: 428 VRPVEGQIDDLIGEINQEISRKNKVLVTTLTKRMAEDLTDYMREIGIRVKYLHSDVDTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 488 RTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S++LAIDET RRR+ Q+ +N++H I P+++++ + + I   + + 
Sbjct: 548 NSEGHVIMYADKLTDSMRLAIDETERRRKIQMAYNEEHGITPKTIQKAVRDQIS--ISKK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A   + ++    S+S+K+ +  +  + K+M  AA  L+FE AA +RD++  LK
Sbjct: 606 VAAEELKLEKDPESMSRKELEKLIGEVTKRMKKAAAELDFESAAELRDKLIELK 659


>gi|237756940|ref|ZP_04585409.1| excinuclease ABC subunit B [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237690900|gb|EEP60039.1| excinuclease ABC subunit B [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 663

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/654 (52%), Positives = 466/654 (71%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++++ P+GDQP AI QL + + S    Q+LLG TG+GKTFT+A +IE   +P ++++
Sbjct: 6   FNLKSNFKPTGDQPKAIKQLYENLISGVNQQVLLGATGTGKTFTIANLIEKYGKPTLILS 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K  FP NAVEYFVSYYDYYQPEAY+P+ D YIEK+S+IN+ IDR+RH
Sbjct: 66  HNKTLAAQLYREIKELFPDNAVEYFVSYYDYYQPEAYIPQKDLYIEKDSAINDAIDRLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL+ER D IVV+SVSCIYG+G+ E Y ++ +QL +G  ++++ LL  LV+ QY+R 
Sbjct: 126 SATRSLIERPDTIVVASVSCIYGLGTPEFYEKLRLQLYVGMEIDRQTLLRKLVELQYQRD 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGTF+V GD++EI P++ ED+  RV  FG++IE ISE         R ++   I+
Sbjct: 186 DFSLKRGTFKVKGDTVEILPAYTEDIIVRVEFFGDEIESISEIDIFNRDVKRKLDRTVIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV PRP +  A+K I+++L++ + E ++ G+ +EA RL QR  YD+EM+   G+C+
Sbjct: 246 PASHYVIPRPDMLEAIKQIQKDLEIEVEEFKRAGKEIEANRLWQRTNYDIEMMLELGTCK 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY  GR PGEPP TL +Y PED LL VDESHVTIPQI  MY GDF RK  L +Y
Sbjct: 306 GIENYSRYFDGRKPGEPPYTLIDYFPEDFLLIVDESHVTIPQIKAMYNGDFSRKENLVKY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           G+R+ S  DNRPL+FEE+       I VSATP  WE+++ +G+IVEQIIRPTGL+DP +E
Sbjct: 366 GWRMKSAYDNRPLKFEEFVQKIQKAIYVSATPADWEIKRSKGVIVEQIIRPTGLLDPIIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ +EI    ++  R ++  LTK+MAE L +YL ER I+  Y+HSE+ T+E
Sbjct: 426 VKKTGGQIDDLINEIWKVKERNERAIVITLTKKMAEHLADYLTEREIKAIYLHSEIDTIE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II++ R GK+DV+VG+NLLREGLD+PE  LVA LDADK+GFLRSKT+LIQTIGRAAR
Sbjct: 486 RVKIIKEFREGKYDVIVGVNLLREGLDMPEVSLVAALDADKQGFLRSKTALIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILYAD +T ++   I+ET RRR+ Q E+NKKH I P++V +   EV D I LE+
Sbjct: 546 NVNGKAILYADKLTPAMIETIEETNRRRKIQEEYNKKHGITPKTVSK---EVKDLISLEE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                I         S++     ++ L KQM   A N  FE+AA IRD++++LK
Sbjct: 603 LGILEIYNQLPDDINSEEDLMKKIEQLEKQMWDYAKNWEFEKAAEIRDQLEKLK 656


>gi|297590309|ref|ZP_06948948.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus MN8]
 gi|297576608|gb|EFH95323.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312438814|gb|ADQ77885.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus TCH60]
          Length = 677

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/679 (51%), Positives = 481/679 (70%), Gaps = 16/679 (2%)

Query: 128 SWSINNHSKDITF--------FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGS 179
           S +INN  K+  +        F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+
Sbjct: 2   SGNINNTLKEEAYVTMVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGT 61

Query: 180 GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239
           GKTFTM+ VI+ + +P +++A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP
Sbjct: 62  GKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVP 121

Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
            TDT+IEK++SIN++ID++RHSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++
Sbjct: 122 STDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRV 181

Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359
           G  +++ ELL  LV  QY R DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ 
Sbjct: 182 GMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDR 241

Query: 360 ISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419
           I E   LTG+ ++  E   I+  SH+VT    L  A++ I++EL+ RL EL  E +LLEA
Sbjct: 242 IREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEA 301

Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT 479
           QRLEQR  YDLEM+   G C  IENYS +LT R  G  P TL +Y  +D L+ +DESHVT
Sbjct: 302 QRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVT 361

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           +PQ+ GMY GD  RK  L ++GFRLPS +DNRPL+FEE+       + VSATPG +E+E 
Sbjct: 362 LPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEH 421

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
               +VEQIIRPTGL+DP +E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT
Sbjct: 422 TDK-MVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLT 480

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
            Y+ E  I+V Y+HSE+KTLERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDA
Sbjct: 481 TYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDA 540

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
           DKEGFLRS  SLIQTIGRAARN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH 
Sbjct: 541 DKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHG 600

Query: 720 INPQSVKEKIMEVIDPILLEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAAD 776
           I P+++ +KI ++I   +  D         AQ +    ++KK+ +  + ++ K+M  AA 
Sbjct: 601 ITPKTINKKIHDLISATVENDENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAK 656

Query: 777 NLNFEEAARIRDEIKRLKS 795
           +L+FE+A  +RD +  LK+
Sbjct: 657 DLDFEKATELRDMLFELKA 675


>gi|157414255|ref|YP_001485121.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9215]
 gi|157388830|gb|ABV51535.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str. MIT
           9215]
          Length = 679

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/670 (51%), Positives = 464/670 (69%), Gaps = 17/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++Q  Y P+GDQP AI QL+KG+++ ++ Q LLG TG+GKTFT+A VI+   RPA+V+A
Sbjct: 4   YKLQAPYEPNGDQPEAIKQLVKGVNTGKEFQTLLGATGTGKTFTIANVIQQTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G S+  +  L SLV+ QY R 
Sbjct: 124 SATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFEVGKSINLRSSLRSLVENQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI I RG FR+ GD +EI P++ ED   R+  FG+++E I    P TG+ + ++E + +Y
Sbjct: 184 DIEITRGRFRIKGDVLEIGPAY-EDRLIRIEFFGDEVEAIRYIDPTTGEILESLEQVSVY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L +A+  I+ ELK +L +   EG+LLEAQRLEQR  YDLEML+  G C 
Sbjct: 243 PAKHFVTPKERLESAISAIRSELKTQLEKFTYEGKLLEAQRLEQRTKYDLEMLKEVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L+GR  G PP  L +Y P+D LL VDESHVT PQ+  MY GD  RK  L ++
Sbjct: 303 GVENYARHLSGREEGSPPECLIDYFPKDWLLVVDESHVTCPQLHAMYNGDQSRKKVLIDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+      T+ +SATPG WEL+QC G  +EQ+IRPTG++DP ++
Sbjct: 363 GFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWELDQCDGKFIEQVIRPTGVLDPVID 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  Q+ED+  EI + A++  R+L+T LTKRMAEDLT++L E  +RVRY+HSE+ ++E
Sbjct: 423 VRPSEGQIEDLLSEIRIRAKKNQRVLVTTLTKRMAEDLTDFLSENKVRVRYLHSEIHSIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII+DLR+G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V    +LYAD  T S++ AI ET RRR  Q ++N+ + I P+   +KI   I   L   
Sbjct: 543 HVEGVALLYADNFTDSMKRAISETERRRTIQKKYNQVNGITPKPAGKKIENSILSFLELS 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS----------------LRKQMHLAADNLNFEEAA 784
                  +    +++   K  + L S                L  +M  AA  LNFEEAA
Sbjct: 603 RKLDADGLSKDLINIVNNKTDSILNSSDNQCLLEELPDLIEKLEIKMKDAAKELNFEEAA 662

Query: 785 RIRDEIKRLK 794
            +RD IK+L+
Sbjct: 663 NLRDRIKKLR 672


>gi|293399737|ref|ZP_06643883.1| excinuclease ABC subunit B [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306137|gb|EFE47380.1| excinuclease ABC subunit B [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 660

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/658 (53%), Positives = 464/658 (70%), Gaps = 5/658 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + ++Y P GDQP AI +L++GI   +K Q+LLG TG+GKTFT++ VI  + +P +V 
Sbjct: 7   LFDLVSEYQPQGDQPKAIKELVEGIKEGKKQQVLLGATGTGKTFTISNVIAQVNKPTLVF 66

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP+N VEYFVS +DYYQPEAY+P +DTYI+K ++ N ++D +R
Sbjct: 67  AHNKTLAGQLYSEFKEFFPNNRVEYFVSNFDYYQPEAYIPSSDTYIDKNATTNMELDMLR 126

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +A  S+LER D I+++SV+CIYG  + E Y  M   +++GD +++KEL+  LV +QY+R
Sbjct: 127 MAAVNSILERRDTIIIASVACIYGASNPEQYRDMFFSIRVGDIIDRKELMGKLVARQYQR 186

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK- 378
            D+ +IRGTFRV GD IE+   H +    R+ MF ++IE I E  PLTG K++N  T+  
Sbjct: 187 NDMDLIRGTFRVRGDVIEVALGHTDSYILRIEMFDDEIERICEVDPLTG-KVQNAYTVYV 245

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  S Y T +  +N A   I  EL+ RL EL+ EG+LLE QRLEQR  YD+E L   G 
Sbjct: 246 VYPASGYATKQEIINRAADTIGAELEERLKELDNEGKLLEKQRLEQRTRYDMEALREFGV 305

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR++ GR PGE P TLF+Y P+D LL VDESHV++PQI GMY GD  RK TL 
Sbjct: 306 CPGIENYSRHIDGRKPGERPYTLFDYFPDDFLLVVDESHVSLPQIRGMYNGDRARKETLV 365

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            YGFRLPS +DNRPLRFEE+  +    + VSATPG +E+E+  G ++EQIIRPTGL+DP 
Sbjct: 366 NYGFRLPSALDNRPLRFEEFEKMYHQAVFVSATPGDYEMEKTHGEVIEQIIRPTGLLDPK 425

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R  + Q++D+ DEI     +  R L+T LT RMAEDL+ YL   + +V ++H EVKT
Sbjct: 426 VEVRPTQGQIDDLVDEIKTRIARNERTLITTLTVRMAEDLSSYLKGMDFKVAWLHHEVKT 485

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIRDLR GK+DVL+GINLLREGLDIPE  L+AILDADKEGFLRS+ SLIQ IGRA
Sbjct: 486 IERTEIIRDLRRGKYDVLIGINLLREGLDIPEVSLIAILDADKEGFLRSERSLIQIIGRA 545

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN + +VI+YADTIT S+Q A+DET RRRE Q+ +NK+H I P+++ + I EV+     
Sbjct: 546 ARNAHGEVIMYADTITGSMQKALDETARRREIQIAYNKEHGITPKTIIKPIHEVVRSKET 605

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           ++     +S  A+     K+K    L +L K+M  AA  L+FE AA +RD +  L++S
Sbjct: 606 QEMTAKYMSKKAKVTKKDKEK---LLVNLEKEMKEAAKVLDFERAAELRDILIELRNS 660


>gi|222444870|ref|ZP_03607385.1| hypothetical protein METSMIALI_00484 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434435|gb|EEE41600.1| hypothetical protein METSMIALI_00484 [Methanobrevibacter smithii
           DSM 2375]
          Length = 655

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/657 (54%), Positives = 464/657 (70%), Gaps = 13/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI  L+ GI+  EK Q LLGVTGSGKTFTMA VIE +Q+P +V++
Sbjct: 4   FKLNSPYKPLGDQPKAINSLVDGINKGEKEQTLLGVTGSGKTFTMANVIEKVQKPTLVIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+I+KESS+NE+ID MRH
Sbjct: 64  HNKTLAAQLYEEFKEFFPDNAVEYFVSYYDYYQPEAYVPRTDTFIDKESSVNEEIDIMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLL R+D IVVSSVSCIYG+GS E Y +    + +GD+ ++ +++  LV  QY+R 
Sbjct: 124 SATQSLLSRDDVIVVSSVSCIYGVGSPEDYGEFAFGIAVGDNYDRSDIIRKLVFMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD IEI P H      RV +FG++I+ IS    +TG+K  +++   I+
Sbjct: 184 DIEFARGHFRVRGDVIEINPVH-GTPPVRVELFGDEIDAISLIDKVTGKKTESLKRYMIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V  +  ++TA++ I +EL  RL E     +LLEAQRLEQR  +D+EML+  G C 
Sbjct: 243 PAKHFVVGQDKMDTAIRNISDELDERLNEFNLSNKLLEAQRLEQRTRFDIEMLQEMGYCP 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS +L+GR  GE P +L +Y PED L  +DESHVT+PQI GMY GD  RK TL E+
Sbjct: 303 GVENYSMHLSGRKWGEKPYSLLKYFPEDYLTIIDESHVTLPQIRGMYNGDRARKETLVEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPLRF+E+       I VSATPG++EL +    IVEQIIRPTGLVDP V 
Sbjct: 363 GFRLPSAKENRPLRFDEFESSINQIIYVSATPGAYELSRSSN-IVEQIIRPTGLVDPEVI 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + QVED+  E+   A++  R+L+T LTK+MAEDLT+Y  +  ++VRYMHSE+ TLE
Sbjct: 422 IRPVKGQVEDLLGEVKKRAKKDERVLVTTLTKKMAEDLTDYYAKIGVKVRYMHSEIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI+I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR++TSLIQTIGRAAR
Sbjct: 482 RIDIVDDLRRGTFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME--VIDPILL 738
           N+N +VI+Y D +T S++ A   T++RR+ Q+++N+KH I P++ K  + +  V + + +
Sbjct: 542 NINGQVIMYVDEMTDSVKNATAITSKRRKIQIKYNEKHGIVPKTTKRALKDKKVAEDLDI 601

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           E    + I  D  +L +S          L   M  AA  L+FE AA +RD+I  LK 
Sbjct: 602 EGTDISKIPKDELRLLIS---------DLENDMKEAAAKLDFERAASLRDQIATLKG 649


>gi|118472594|ref|YP_888108.1| excinuclease ABC subunit B [Mycobacterium smegmatis str. MC2 155]
 gi|118173881|gb|ABK74777.1| excinuclease ABC, B subunit [Mycobacterium smegmatis str. MC2 155]
          Length = 736

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/690 (52%), Positives = 481/690 (69%), Gaps = 30/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI +L + I + E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 45  FEVVSPYAPAGDQPAAIDELERRIRAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 104

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 105 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 164

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ +SY    V+L++G  V +  LL  LV  QY R 
Sbjct: 165 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVELQVGQEVPRDGLLRLLVDVQYNRN 224

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI PS+ E++A R+  FG++IE +   +PLTG  +R VE+++I+
Sbjct: 225 DVAFTRGTFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGDVVRQVESLRIF 283

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A++ I++EL+ RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 284 PATHYVAGPERMAAAIESIEKELEERLAELENQGKLLEAQRLRMRTNYDVEMMRQVGFCS 343

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED LL +DESHVT+PQI GMY GD  RK  L ++
Sbjct: 344 GIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVDF 403

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE+      T+ +SATPG +E+ Q  G  VEQ+IRPTGLVDP V 
Sbjct: 404 GFRLPSAVDNRPLTWEEFAERIGQTVYLSATPGPYEISQAGGEFVEQVIRPTGLVDPKVV 463

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 464 VKPTKGQIDDLIGEIRTRTERDERVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 523

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 524 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQTIGRAAR 583

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+P+ +++KI +++D +  E 
Sbjct: 584 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPKPLRKKIADILDQVYREA 643

Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773
             T ++ I     + S+ +      G+A                      +K L  QM  
Sbjct: 644 DDTESVEIGGSGRNSSRGRRAQGEPGRAVSAGIVEGKDTSNMPRAELADLIKELTDQMMA 703

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE AARIRDEI  LK     +G+D
Sbjct: 704 AARDLQFELAARIRDEIADLKKE--LRGMD 731


>gi|126697177|ref|YP_001092063.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9301]
 gi|189037985|sp|A3PFD7|UVRB_PROM0 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|126544220|gb|ABO18462.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str. MIT
           9301]
          Length = 679

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/670 (51%), Positives = 465/670 (69%), Gaps = 17/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++Q  Y P+GDQP AI +L+KG+++ ++ Q LLG TG+GKTFT+A VI+   RPA+V+A
Sbjct: 4   YKLQAPYEPNGDQPEAIKKLVKGVNTGKEFQTLLGATGTGKTFTIANVIQQTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G S+  +  L SLV+ QY R 
Sbjct: 124 SATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFEVGKSINLRSYLRSLVENQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI I RG FR+ GD +EI P++ ED   R+ +FG+++E I    P TG+ + ++E + +Y
Sbjct: 184 DIEITRGRFRIKGDVLEIGPAY-EDRLIRIELFGDEVEAIRYVDPTTGEILESLEQVSVY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L +A+  I+ ELK +L +   EG+LLEAQRLEQR  YDLEML+  G C 
Sbjct: 243 PAKHFVTPKERLESAISAIRSELKTQLDKFTYEGKLLEAQRLEQRTKYDLEMLKEVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L+GR  G PP  L +Y P+D LL VDESHVT PQ+  MY GD  RK  L ++
Sbjct: 303 GVENYARHLSGREEGSPPECLIDYFPKDWLLVVDESHVTCPQLHAMYNGDQSRKKVLIDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+      T+ +SATPG WEL+QC G  +EQ+IRPTG++DP ++
Sbjct: 363 GFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWELDQCDGEFIEQVIRPTGVLDPVID 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  Q+ED+  EI + A++  R+L+T LTKRMAEDLT++L E  +RVRY+HSE+ ++E
Sbjct: 423 VRPSEGQIEDLLSEIRIRAEKNQRVLVTTLTKRMAEDLTDFLSENKVRVRYLHSEIHSIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII+DLR+G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V    +LYAD  T S++ AI ET RRR  Q ++N+ + I P+   +KI   I   L   
Sbjct: 543 HVEGVALLYADNFTDSMKRAISETERRRTIQKKYNQVNGITPKPAGKKIENSILSFLELS 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS----------------LRKQMHLAADNLNFEEAA 784
                  +    +++   K  A L S                L  +M  AA  LNFEEAA
Sbjct: 603 RKLDAGGLSKDLINIVNNKTDAILGSSDNQCLLEELPDLIEKLEIKMKDAAKELNFEEAA 662

Query: 785 RIRDEIKRLK 794
            +RD IK+L+
Sbjct: 663 NLRDRIKKLR 672


>gi|225019978|ref|ZP_03709170.1| hypothetical protein CLOSTMETH_03939 [Clostridium methylpentosum
           DSM 5476]
 gi|224947342|gb|EEG28551.1| hypothetical protein CLOSTMETH_03939 [Clostridium methylpentosum
           DSM 5476]
          Length = 664

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/657 (53%), Positives = 464/657 (70%), Gaps = 1/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ+ + Y P+GDQP AIA+L++GI   +K Q LLGVTGSGKTFTMA +I  +Q+P +V+
Sbjct: 9   LFQLVSPYQPTGDQPEAIAKLVEGIKRGDKEQTLLGVTGSGKTFTMANIIAQVQKPTLVL 68

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQL SEF+ FFP +AVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++R
Sbjct: 69  AHNKTLAAQLCSEFREFFPTSAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLR 128

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER D I+V+SVSCIY +GS   Y  M++ L+ G    + ELLS L+  QY+R
Sbjct: 129 HSATCALAERRDVIIVASVSCIYSLGSPIDYRSMVISLREGMEKPRDELLSKLISIQYER 188

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   R   RV GD +EIFP++  D A RV  FG++I+ IS    LTG+    V  + I
Sbjct: 189 NDINFTRNKVRVRGDVVEIFPAYSSDTAIRVEFFGDEIDRISMINALTGEVKERVAHVAI 248

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y +SHY+ P   ++ A+  +++EL  R+        LLEAQR++QR  YDLEMLE  G C
Sbjct: 249 YPSSHYIVPPDKMHEAVVKLEDELNERVKYFTDNEMLLEAQRIKQRTMYDLEMLEEIGFC 308

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           + IENYSR L+GR PG  P TL ++ P+D LLFVDESHV +PQ+ GM+ GD  RK TL +
Sbjct: 309 KGIENYSRVLSGRKPGAVPYTLLDHFPDDFLLFVDESHVMLPQVRGMFFGDHARKKTLID 368

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS  DNRPL F+E+       + VSATPG +E E      VEQ+IRPTGL+DP +
Sbjct: 369 YGFRLPSAYDNRPLNFDEFYSKINQAVFVSATPGPFEKEHSVQ-TVEQVIRPTGLLDPEI 427

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            ++    Q+ED+  EIN   ++G R+L+T LTK+MAEDLT++L    +RVRY+HS+V T+
Sbjct: 428 VVKPIEGQIEDLLSEINQRTEKGERVLVTTLTKKMAEDLTDFLEGMGVRVRYLHSDVDTI 487

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVL+GINLLREGLDIPE  LV ILDADKEGFLRS+TSLIQTIGRAA
Sbjct: 488 ERMEIIRDLRLGEFDVLIGINLLREGLDIPEVSLVCILDADKEGFLRSETSLIQTIGRAA 547

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN + +VI+YAD +T S++ AI ET RRRE Q+ +N++H I P+++ + + E+++     
Sbjct: 548 RNEHGQVIMYADEVTGSMERAITETMRRREIQMRYNEEHGIVPKTIHKNVHEILEISSKS 607

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             A        +Q  LS+++ +  +K L  +M  AA  L FE A  +RD I+ +K+S
Sbjct: 608 PDAEKGKGKGKKQKKLSREEKQELIKKLTVEMKNAAKLLEFEHAIYLRDRIEEIKNS 664


>gi|220910556|ref|YP_002485867.1| excinuclease ABC subunit B [Cyanothece sp. PCC 7425]
 gi|254764904|sp|B8HQA9|UVRB_CYAP4 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|219867167|gb|ACL47506.1| excinuclease ABC, B subunit [Cyanothece sp. PCC 7425]
          Length = 665

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/665 (53%), Positives = 460/665 (69%), Gaps = 14/665 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T FQ++  + P+GDQP AIAQL   + +  + Q LLG TG+GKT T+A+VIE + +P +
Sbjct: 1   MTGFQIKAPFEPTGDQPRAIAQLTASLQAEHRFQTLLGATGTGKTHTIARVIEKIGKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P TDTYIEK ++INE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYIPVTDTYIEKTAAINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y    V L++G  V+Q++LL  L   QY
Sbjct: 121 LRHSATRSLFERKDVIVVASISCIYGLGIPSEYLNASVPLQVGIEVDQRQLLRDLTTIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG  +++++ +
Sbjct: 181 SRNDLDLGRGRFRVKGDVLEIGPAY-EDRIVRVEFFGDEIDAIRYVDPVTGTTLQSLDNL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           +IY   H+VTP+  L  A   I  ELK RL ELE + +LLEAQRL+QR  YDLEML   G
Sbjct: 240 RIYPARHFVTPQERLEIACADIAAELKDRLTELEAQNKLLEAQRLDQRTRYDLEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR+PGEPP TL +Y P+D LL VDESHVT+PQI GMY GD  RK  L
Sbjct: 300 YCNGVENYSRHLAGRSPGEPPETLIDYFPKDWLLVVDESHVTVPQIRGMYNGDQSRKRVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+       I VSATPG WEL+  +  I+EQIIRPTG+VDP
Sbjct: 360 IDHGFRLPSAADNRPLKSEEFWQKVTQCIFVSATPGDWELDISEDRIIEQIIRPTGVVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    QV+D+  E+    ++  R+L+T LTKRMAEDLTEY  +R +RVRY+HSE+ 
Sbjct: 420 EIFVRPTTGQVDDLLGEVRDRIERRERVLITTLTKRMAEDLTEYFQDRGVRVRYLHSEIG 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ERIEI+ DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 AIERIEILEDLRKGTFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V  + ILYAD +T S+  AI ET RRR  Q  +N+KH I PQ + +K    I   L
Sbjct: 540 AARHVRGQAILYADNLTDSMAKAISETERRRAIQTAYNQKHGITPQPIVKKASNAILAFL 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGK--------AHLKSLRKQMHLAADNLNFEEAARIRDE 789
                  +  ++AQ+L  + ++            +  L  QM  AA  L FEEAA+ RD 
Sbjct: 600 -----EVSRRLNAQELDTAYEQADELPLEDIPELITQLEAQMKEAAKKLEFEEAAKYRDR 654

Query: 790 IKRLK 794
           IK+L+
Sbjct: 655 IKQLR 659


>gi|139439832|ref|ZP_01773209.1| Hypothetical protein COLAER_02240 [Collinsella aerofaciens ATCC
           25986]
 gi|133774847|gb|EBA38667.1| Hypothetical protein COLAER_02240 [Collinsella aerofaciens ATCC
           25986]
          Length = 753

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/688 (51%), Positives = 474/688 (68%), Gaps = 36/688 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+G QP AI  L++G+   ++ Q+LLGVTGSGKTFTMAK IEA+ +P +VMA
Sbjct: 32  FEVVSPYEPAGSQPKAIESLVRGVRDGDRYQVLLGVTGSGKTFTMAKTIEALGKPTLVMA 91

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL SE K FFP+NAV YFVSYYDYYQPEAYVP++DTYIEK+SSINE+++ +RH
Sbjct: 92  PNKTLAAQLASELKEFFPNNAVVYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVEMLRH 151

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT SLL R D IVV+SVSCIYGIGS E Y+ +   +     +E+ + + +L+  QY R 
Sbjct: 152 QATASLLSRRDVIVVASVSCIYGIGSPEDYAGLAPNVDKKVPLERDDFIHALIDIQYDRN 211

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGTFRV GD ++++P + E    R   FG+++E I+E   +TG+ +R  E I ++
Sbjct: 212 DYDLARGTFRVRGDVVDVYPPYAEH-PLRFEFFGDEVELIAEIDEVTGEMLREYEAIPVW 270

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +P +  A+K I EE + R+ EL+   +LLEAQRL+QR  YDLEMLET G C 
Sbjct: 271 PASHYVTEKPKVKAALKSISEECEKRVAELKATDKLLEAQRLQQRTDYDLEMLETMGFCN 330

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR PGEPP TL +Y P+D L  +DESHVT+PQI GM+ GD  RK TL E+
Sbjct: 331 GIENYSRHLDGRKPGEPPFTLIDYFPKDMLCIIDESHVTVPQIRGMHEGDRSRKVTLVEH 390

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+    P  I VSATPG +EL   Q   VEQIIRPTGL+DP ++
Sbjct: 391 GFRLPSALDNRPLRFDEFEARIPQFIYVSATPGDYELRVSQN-DVEQIIRPTGLLDPKID 449

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+ DEI     +  R+L+T LTKRMAEDLT++L +  I+V YMHS+  T++
Sbjct: 450 VRPVRGQIDDLEDEIRERVARKERVLVTTLTKRMAEDLTDHLLDAGIKVNYMHSDTATMD 509

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+R LR GK DVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 510 RVEILRTLREGKIDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNRRSLIQTIGRAAR 569

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD +T S++ AI+ET RRRE Q+ +N++H I P++V++ I + I   + E 
Sbjct: 570 NADGEVIMYADVVTDSMKEAIEETQRRREIQMAYNEEHGIVPKTVRKAIND-ISSFIAEA 628

Query: 741 AATTNISIDAQQLSLS-------KKKGKAH--------------------------LKSL 767
             T      ++  SL         + G+                            ++++
Sbjct: 629 EKTVGSKGRSKGDSLGHGAFYTPDESGEGGVPETVAPEQTLAEQLQELPHDELVRIVETM 688

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKS 795
            + M  A+  ++FEEAAR+RD + ++++
Sbjct: 689 EEDMRNASAAMDFEEAARLRDAVVQIRA 716


>gi|253580706|ref|ZP_04857970.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848077|gb|EES76043.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 662

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/656 (52%), Positives = 462/656 (70%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L++G     + + LLGVTGSGKTFTMA VI  + +P +++A
Sbjct: 4   FELHSEYKPTGDQPQAIERLVRGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID++R 
Sbjct: 64  HNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDKLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT ++ ER D +V+SSVSCIYG+GS + +  M++ L+ G + ++ E++  L+  QY R 
Sbjct: 124 SATAAMSERKDVVVISSVSCIYGLGSPQEFFDMMISLRPGMTKDRDEVIRELIDIQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   R TFRV GD++EIFP++  D A RV  FG++I+ ISE   LTG+       I I+
Sbjct: 184 EMDFHRSTFRVRGDTLEIFPANSSDTAVRVEFFGDEIDRISEIDVLTGEIKCQRSHISIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P   +  A   I+EELK R+   + E +LLEAQR+ +R  +D+EM++ TG C 
Sbjct: 244 PASHYVVPAEQIQRAAVAIEEELKERVEYFKSEDKLLEAQRISERTNFDIEMMKETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G  PG+PP TL +Y  +D LL +DESH+T+PQ+ GMY GD  RK TL +Y
Sbjct: 304 GIENYSRHLSGLKPGQPPYTLLDYFGDDFLLIIDESHITVPQVGGMYAGDQSRKQTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       + VSATPG +E +  + +  EQIIRPTGL+DP VE
Sbjct: 364 GFRLPSAKDNRPLSFEEFESKLDQVMFVSATPGQYEYDH-ELLRAEQIIRPTGLLDPKVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N    +  +IL+T LTKRMAEDLTEY+ E  IRVRY+HS++ TLE
Sbjct: 423 VRPIEGQIDDLIGEVNKEVSKKHKILITTLTKRMAEDLTEYMKEVGIRVRYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  IIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RARIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S+  AI ET RRR  Q  +NK+H I P ++K+ + ++I   + + 
Sbjct: 543 NSEGHVIMYADNMTDSMHKAITETNRRRTIQEAYNKEHGITPTTIKKAVRDLI--AVSKA 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A T + +     S+++K+    +  + KQM  AA +LNFE+AA +RD++  LK +
Sbjct: 601 VAETEVRLQKDPESMTRKELTKLIAQVEKQMRAAAADLNFEQAAELRDKMIDLKKN 656


>gi|148381328|ref|YP_001255869.1| excinuclease ABC subunit B [Clostridium botulinum A str. ATCC 3502]
 gi|148290812|emb|CAL84946.1| excinuclease ABC subunit B [Clostridium botulinum A str. ATCC 3502]
          Length = 665

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/656 (52%), Positives = 464/656 (70%), Gaps = 6/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + ++P+GDQP AI  + KGI  REK Q L+GVTGSGKTFTMA +IE +Q+P +V+A
Sbjct: 7   FKVISKFNPTGDQPKAIKSIAKGIEKREKFQTLIGVTGSGKTFTMANIIEKVQKPTLVLA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP+NAVEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID++RH
Sbjct: 67  HNKTLAAQLCSEFREFFPNNAVEYFVSYYDYYQPEAYVAQSDTYIEKDASINDEIDKLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  LV+ QY+R 
Sbjct: 127 SATSALFERKDVIIVASVSCIYGLGNPEEYKKLTISLREGMEKDRDEIIKKLVEIQYERN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD ++IFP+     A RV  FG++I+ I EF  LTG+ I  ++ I I+
Sbjct: 187 DIDFSRGTFRVKGDVLDIFPASSSSKAVRVEFFGDEIDRIKEFDVLTGETITKLKHISIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T +  L  A+K I+EEL+ R+ EL  + ++LEAQRL+QR  +D+EM+   G C 
Sbjct: 247 PASHFATSKDRLEVAIKDIEEELEERVKELVSQDKILEAQRLKQRTNFDIEMMREVGYCT 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR  G PP TL +Y P+D LLF+DESHVT+PQ+  M  GD  RK +L EY
Sbjct: 307 GIENYSRVLDGRAKGTPPQTLLDYFPQDFLLFIDESHVTLPQVKAMQAGDKSRKDSLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL F+E+       + VSATP  +ELE       EQ+IRPTGL+DP + 
Sbjct: 367 GFRLPCAYDNRPLTFKEFENKLNQVVFVSATPAKYELEYSTN-TAEQVIRPTGLLDPEII 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+Y  I    ++G RIL+T LTK+MAEDLT+YL E  ++ RY+HS++ T+E
Sbjct: 426 VKPVKGQIDDLYTSIQETIKRGFRILVTTLTKKMAEDLTDYLKEMGVKTRYLHSDIDTIE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II DLR G+F VLVGINLLREGLDIPE  LV ILDADKEGFLRS+TSLIQT+GRAAR
Sbjct: 486 RMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+Y D ITKS++  I ET RRR+ Q+E+N++H I P+++ + I EVI    + D
Sbjct: 546 NSESKVIMYGDVITKSMEKTIKETNRRRKIQMEYNEEHGIVPKTIIKDIREVIQ---ISD 602

Query: 741 AATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A      D    +L          ++   ++M  AA NL FE+AA +RD I +LK
Sbjct: 603 IAEERKEYDNLNEALKSYNNDIDKLIEKYEEEMKEAAQNLQFEKAAHLRDVIYKLK 658


>gi|154483753|ref|ZP_02026201.1| hypothetical protein EUBVEN_01457 [Eubacterium ventriosum ATCC
           27560]
 gi|149735244|gb|EDM51130.1| hypothetical protein EUBVEN_01457 [Eubacterium ventriosum ATCC
           27560]
          Length = 660

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/654 (53%), Positives = 465/654 (71%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L++G    ++ Q LLGVTGSGKTFTMA VIE + +P +++A
Sbjct: 4   FELVSEYKPTGDQPQAIEELVEGFKKGKQFQTLLGVTGSGKTFTMANVIEQLNKPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID++RH
Sbjct: 64  HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L+ER D I++SSVSCIYG+G    Y  M+V L+     ++ E++  L++ QY R 
Sbjct: 124 SATMALMERKDVIIISSVSCIYGLGDPIDYKNMVVSLRPNTIRDRDEIIHKLIEIQYDRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV G+++EIFP+   D A RV  F ++IE ISE   LTGQ    +E + I+
Sbjct: 184 DMDFKRGTFRVRGENLEIFPASYTDSAIRVEFFDDEIERISEIDALTGQIKNELEHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHYV P   +  A+K I++EL+ ++   + E +L+EAQR+ +R  +D+EML  TG C 
Sbjct: 244 PNSHYVVPPEKMERAIKDIEKELEEQVAYFKSEDKLIEAQRIAERTNFDMEMLRETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ G  PG  P TL EY  +D L+ VDESH+TIPQI GMY GD  RK+TL +Y
Sbjct: 304 GIENYSRHMAGLEPGATPHTLMEYFGDDFLIIVDESHITIPQIRGMYAGDQSRKSTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+  +    + VSATP  +E E   G   EQIIRPTGL+DP VE
Sbjct: 364 GFRLPSAKDNRPLNFEEFESMIDQMMFVSATPNVYEQEHELG-RAEQIIRPTGLLDPEVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  ++L+T LTKRMAEDLT+Y+ +  IRV+Y+HS++ TLE
Sbjct: 423 VRPVEGQIDDLITEINKEVAKKNKVLVTTLTKRMAEDLTDYMRDVGIRVKYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RTQIIRDMRLDVFDVLVGINLLREGLDIPEIALVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S+  A+ ET RRRE Q ++N +H I P ++K+ + ++I      D
Sbjct: 543 NAEGHVIMYADNITDSMDKALTETNRRREIQQKYNNEHGITPTTIKKAVRDLISISKEVD 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              +++  D +  S+  K+ K  ++ ++K+M  AA  L+FE A  +RD++  L+
Sbjct: 603 RKISDVEKDPE--SMDYKELKKLIEKVKKKMERAAAELDFETAIEMRDKLAELR 654


>gi|225377365|ref|ZP_03754586.1| hypothetical protein ROSEINA2194_03013 [Roseburia inulinivorans DSM
           16841]
 gi|225210790|gb|EEG93144.1| hypothetical protein ROSEINA2194_03013 [Roseburia inulinivorans DSM
           16841]
          Length = 667

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/655 (53%), Positives = 466/655 (71%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQP AI +L++G     + + LLGVTGSGKTFTMA VI  + +P ++++
Sbjct: 11  FKLHAPYQPTGDQPQAIEELVRGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTLIIS 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYI K+S+INE+ID++R 
Sbjct: 71  HNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIAKDSAINEEIDKLRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L+ER D IV++SVSCIYG+GS E Y  M+V L+ G   ++ E++ +LV  QY R 
Sbjct: 131 SATAALVERKDVIVIASVSCIYGLGSPEDYLGMMVSLRPGMEKDRDEVIRALVDIQYTRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EIFP++  D A RV  FG++I+ I+E   LTG+   ++E   ++
Sbjct: 191 DMDFHRGTFRVRGDTVEIFPANYSDTAIRVEFFGDEIDRITEIDVLTGEVKCSLEHFAVF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P   +  A   I+ E++ R+   + E +LLEAQR+ +R  +D+EML+ TG C 
Sbjct: 251 PASHYVVPMEKIQKACVNIEAEMEERVKYFKGEDKLLEAQRIAERTNFDIEMLKETGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L G   G  P TL +Y  +D L+ VDESH+TIPQI GMY GD  RK+TL +Y
Sbjct: 311 GIENYSRHLAGLPAGATPHTLMDYFKDDFLIIVDESHITIPQIGGMYAGDQSRKSTLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       + VSATP ++E E  + +  EQIIRPTGL+DP V 
Sbjct: 371 GFRLPSAKDNRPLNFEEFESKIDQMLFVSATPNTYEDEH-ELLRAEQIIRPTGLLDPEVV 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N    +  ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ TLE
Sbjct: 430 VRPVEGQIDDLIGEVNKETAKKHKVLITTLTKRMAEDLTDYMKELGIRVKYLHSDIDTLE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 490 RAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S++ AIDET RRR  Q E+NK+HNI P+++++ + ++I   + + 
Sbjct: 550 NSEGHVIMYADKITDSMRNAIDETERRRRIQQEYNKEHNITPKTIQKSVRDLIS--VSKK 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            A   ++      S++K++    +  ++K+M  AA +LNFE AA  RD++ +LK+
Sbjct: 608 VAQEELNFKKDPESMNKEELTKLIADIQKKMQRAAADLNFEAAAEYRDQMLQLKT 662


>gi|153931681|ref|YP_001385704.1| excinuclease ABC subunit B [Clostridium botulinum A str. ATCC
           19397]
 gi|153935352|ref|YP_001389110.1| excinuclease ABC subunit B [Clostridium botulinum A str. Hall]
 gi|153937973|ref|YP_001392743.1| excinuclease ABC subunit B [Clostridium botulinum F str. Langeland]
 gi|168178931|ref|ZP_02613595.1| excinuclease ABC, B subunit [Clostridium botulinum NCTC 2916]
 gi|170755543|ref|YP_001783024.1| excinuclease ABC subunit B [Clostridium botulinum B1 str. Okra]
 gi|189037960|sp|A7GIY3|UVRB_CLOBL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|229557959|sp|A7FYY1|UVRB_CLOB1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|229557960|sp|B1IFX3|UVRB_CLOBK RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|152927725|gb|ABS33225.1| excinuclease ABC, B subunit [Clostridium botulinum A str. ATCC
           19397]
 gi|152931266|gb|ABS36765.1| excinuclease ABC, B subunit [Clostridium botulinum A str. Hall]
 gi|152933869|gb|ABS39367.1| excinuclease ABC, B subunit [Clostridium botulinum F str.
           Langeland]
 gi|169120755|gb|ACA44591.1| excinuclease ABC, B subunit [Clostridium botulinum B1 str. Okra]
 gi|182670234|gb|EDT82210.1| excinuclease ABC, B subunit [Clostridium botulinum NCTC 2916]
 gi|295320723|gb|ADG01101.1| excinuclease ABC, B subunit [Clostridium botulinum F str. 230613]
 gi|322807710|emb|CBZ05285.1| excinuclease ABC subunit B [Clostridium botulinum H04402 065]
          Length = 662

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/656 (52%), Positives = 464/656 (70%), Gaps = 6/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + ++P+GDQP AI  + KGI  REK Q L+GVTGSGKTFTMA +IE +Q+P +V+A
Sbjct: 4   FKVISKFNPTGDQPKAIKSIAKGIEKREKFQTLIGVTGSGKTFTMANIIEKVQKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP+NAVEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFREFFPNNAVEYFVSYYDYYQPEAYVAQSDTYIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  LV+ QY+R 
Sbjct: 124 SATSALFERKDVIIVASVSCIYGLGNPEEYKKLTISLREGMEKDRDEIIKKLVEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD ++IFP+     A RV  FG++I+ I EF  LTG+ I  ++ I I+
Sbjct: 184 DIDFSRGTFRVKGDVLDIFPASSSSKAVRVEFFGDEIDRIKEFDVLTGETITKLKHISIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T +  L  A+K I+EEL+ R+ EL  + ++LEAQRL+QR  +D+EM+   G C 
Sbjct: 244 PASHFATSKDRLEVAIKDIEEELEERVKELVSQDKILEAQRLKQRTNFDIEMMREVGYCT 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR  G PP TL +Y P+D LLF+DESHVT+PQ+  M  GD  RK +L EY
Sbjct: 304 GIENYSRVLDGRAKGTPPQTLLDYFPQDFLLFIDESHVTLPQVKAMQAGDKSRKDSLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL F+E+       + VSATP  +ELE       EQ+IRPTGL+DP + 
Sbjct: 364 GFRLPCAYDNRPLTFKEFENKLNQVVFVSATPAKYELEYSTN-TAEQVIRPTGLLDPEII 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+Y  I    ++G RIL+T LTK+MAEDLT+YL E  ++ RY+HS++ T+E
Sbjct: 423 VKPVKGQIDDLYTSIQETIKRGFRILVTTLTKKMAEDLTDYLKEMGVKTRYLHSDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II DLR G+F VLVGINLLREGLDIPE  LV ILDADKEGFLRS+TSLIQT+GRAAR
Sbjct: 483 RMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+Y D ITKS++  I ET RRR+ Q+E+N++H I P+++ + I EVI    + D
Sbjct: 543 NSESKVIMYGDVITKSMEKTIKETNRRRKIQMEYNEEHGIVPKTIIKDIREVIQ---ISD 599

Query: 741 AATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A      D    +L          ++   ++M  AA NL FE+AA +RD I +LK
Sbjct: 600 IAEERKEYDNLNEALKSYNNDIDKLIEKYEEEMKEAAQNLQFEKAAHLRDVIYKLK 655


>gi|328955215|ref|YP_004372548.1| Excinuclease ABC subunit B [Coriobacterium glomerans PW2]
 gi|328455539|gb|AEB06733.1| Excinuclease ABC subunit B [Coriobacterium glomerans PW2]
          Length = 745

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/688 (51%), Positives = 470/688 (68%), Gaps = 37/688 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AIA L++GI   ++ Q+LLGVTGSGKT+TMAK IEA+ +PA+VM 
Sbjct: 25  FEVVSPFEPSGDQPEAIASLVEGIRDNDRYQVLLGVTGSGKTYTMAKTIEALGKPALVME 84

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ+ SE + FFP+NAV YFVSYYDYYQPEAYVP +DTYIEK+SSINE+++ +RH
Sbjct: 85  PNKTLAAQVASELREFFPNNAVVYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEVEMLRH 144

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT SLL R D IVV+SVSCIYGIGS E Y+ +   +     +E+ + + +L+  QY R 
Sbjct: 145 QATASLLSRRDVIVVASVSCIYGIGSPEDYAGLAPNVDKTQPLERDDFIHALIDIQYDRN 204

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGTFRV GD +++FP + E    R   FG+++E I+E   +TG+  R  + I ++
Sbjct: 205 DFDLARGTFRVRGDVVDVFPPYAEH-PLRFEFFGDEVELIAEIDEVTGEITREYDAIPVW 263

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +P +  A+K I+ EL  R+ EL+ E +LLEAQRL+QR  YDLEMLET G C 
Sbjct: 264 PASHYVTEKPKVAAALKTIEAELSERVGELKAEDKLLEAQRLQQRTDYDLEMLETMGFCN 323

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR PGEPP TL +Y P+D    +DESHVT+PQI GM+ GD  RK TL E+
Sbjct: 324 GIENYSRHLDGRKPGEPPYTLIDYFPKDMFCIIDESHVTVPQIRGMHEGDRSRKVTLIEH 383

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+    P  + VSATPG +EL   Q   VEQIIRPTGL+DP + 
Sbjct: 384 GFRLPSALDNRPLRFDEFEARIPQFVYVSATPGDYELRVSQN-NVEQIIRPTGLLDPKIS 442

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+ DEI   A++  R+L+T LTKRMAEDLT++  +  ++V YMHS+  TL+
Sbjct: 443 VRPVRGQIDDLLDEIKERAERHERVLVTTLTKRMAEDLTDHFLDAGVKVNYMHSDTATLD 502

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLR G  DVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 503 RVEILRDLRRGSIDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNRRSLIQTIGRAAR 562

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ AI ET RRR+ Q  +N+ H I P++V++ I ++     + +
Sbjct: 563 NAGGEVIMYADRITDSMREAIQETARRRDLQERYNEVHGIRPETVRKAINDISS--FISE 620

Query: 741 AA--------------------TTNISIDAQQLSLSKKKGKAH-------------LKSL 767
           AA                    T       +QL  +  +  A              + ++
Sbjct: 621 AAQSVGRRDRSRGDSLGHGEFFTPTGEGSDEQLDETAGRRLAEELAELPHDDLVRIIATM 680

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKS 795
            + M  A++ ++FEEAAR+RD I  L++
Sbjct: 681 EEDMKTASEGMDFEEAARLRDGIVHLRA 708


>gi|300781284|ref|ZP_07091138.1| excision endonuclease subunit UvrB [Corynebacterium genitalium ATCC
           33030]
 gi|300532991|gb|EFK54052.1| excision endonuclease subunit UvrB [Corynebacterium genitalium ATCC
           33030]
          Length = 704

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/668 (52%), Positives = 472/668 (70%), Gaps = 14/668 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++++++ PSGDQP AIA+L + + + E   +L+G TG+GK+ T A +IE  QRP +VM
Sbjct: 27  LFEVESEFEPSGDQPTAIAELDRRLRAGEPDVVLMGATGTGKSATAAWLIEQQQRPTLVM 86

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+R
Sbjct: 87  APNKTLAAQLATELRALLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLR 146

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +LL R D +VVSSVSCIYG+G+ +SY    + L++G+ VE+   L  LV  QY+R
Sbjct: 147 HSATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSLLLRVGEEVERDRFLRLLVDVQYER 206

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+   RGTFRV GD+++I P++ E+VA RV  FG++++ +   +PLTG  ++  E ++I
Sbjct: 207 NDVDFKRGTFRVKGDTVDIIPAY-EEVAVRVEFFGDEVDSLYYIHPLTGDVLQQREELRI 265

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  +HYV     +  A++ IK EL  RL ELE  G+LLEAQRL  R  YDLEM++  G C
Sbjct: 266 FPATHYVATEDRMEKAIEAIKLELADRLEELENRGKLLEAQRLRMRTEYDLEMIQQVGFC 325

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR++ GR PG  P TL +Y PED L  +DESHVT+PQI GMY GD  RK  L E
Sbjct: 326 TGIENYSRHIDGRGPGSAPATLIDYFPEDFLTIIDESHVTVPQIGGMYEGDMSRKRNLVE 385

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL F+E+      T+ +SATPG +ELE   G  VEQ+IRPTGLVDP V
Sbjct: 386 FGFRLPSAVDNRPLTFDEFEDRVGQTVYMSATPGDYELEAAGGEFVEQVIRPTGLVDPKV 445

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            ++  + Q++D+  EI    ++  R+L+T LTKRMAEDLT+Y  +  I+VRY+HS++ TL
Sbjct: 446 TVKPTKGQIDDLIHEIRERTERDERVLVTTLTKRMAEDLTDYFLDNGIQVRYLHSDIDTL 505

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+E++R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAA
Sbjct: 506 QRVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTKSLIQTIGRAA 565

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-- 737
           RNV+ +VI+YAD IT+S+Q AIDET RRR KQ+ +NK+H I+PQ +++KI +++D +   
Sbjct: 566 RNVSGEVIMYADDITESMQEAIDETERRRTKQIAYNKEHGIDPQPLRKKIADILDEVYER 625

Query: 738 -----LEDAATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
                  D A    S +   +      S++  + +  +  L  QM  AA  L FE A R+
Sbjct: 626 AEDDTYGDGAKRGSSGEEAMIEGRDTSSMASDEIEKLIADLTTQMTAAARELKFELAGRL 685

Query: 787 RDEIKRLK 794
           RDEI  L+
Sbjct: 686 RDEIADLR 693


>gi|317506145|ref|ZP_07963968.1| excinuclease ABC [Segniliparus rugosus ATCC BAA-974]
 gi|316255567|gb|EFV14814.1| excinuclease ABC [Segniliparus rugosus ATCC BAA-974]
          Length = 708

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/665 (52%), Positives = 467/665 (70%), Gaps = 12/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP+AIA+L + + + E+  +LLG TG+GK+ T A +IE +QRP +++A
Sbjct: 33  FEVVSEHQPAGDQPSAIAELQRRVEAGERDVVLLGATGTGKSATTAWLIERLQRPTLLIA 92

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 93  PNKTLAAQLANELREMLPKNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 152

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL R D +VV+SVSCIYG+GS +SY    V L  G  V + +LL  LV  QY R 
Sbjct: 153 SATRSLLSRRDVVVVASVSCIYGLGSPQSYLDRSVLLVKGQEVARDQLLRLLVDMQYDRN 212

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P++ E+ A R+  FG++I+ +S    LTG  +  V+ ++I+
Sbjct: 213 DVAFTRGTFRVRGDTLEIIPAY-EEFAVRIEFFGDEIDALSYLNKLTGDVVAEVDQVRIF 271

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVT    +   M+ I++EL  RL  LE +G+LLEAQRL  R  YDLEM++  G C 
Sbjct: 272 PATHYVTGEGRMAQVMEAIRQELAERLATLEAQGKLLEAQRLRMRTEYDLEMIQQVGFCS 331

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG  P TL +Y PED L  +DESHVT+PQI  M+ GD  RK  L EY
Sbjct: 332 GIENYSRHMDGRGPGTAPATLLDYFPEDFLTVIDESHVTVPQIGAMFEGDMARKRNLVEY 391

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE++     T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 392 GFRLPSAVDNRPLTWEEFSERVGQTVYLSATPGPYELGQAGGEFVEQVIRPTGLVDPHVV 451

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI L  ++  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ TL 
Sbjct: 452 VKPTQGQIDDLVHEIRLRTERDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSDIDTLR 511

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 512 RVELLRELRQGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 571

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AI+ET RRREKQ+ +N +  I+P+ +++KI +++D +  E 
Sbjct: 572 NVSGEVHMYADRITDSMRNAIEETERRREKQIAYNLERGIDPKPLRKKIADILDRVYEES 631

Query: 741 AATTNISID-----------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           A T +                      K   +A +  L +QM  AA  L FE AAR+RDE
Sbjct: 632 ADTADAEAKNGKAEKKTAKKKAAGGTPKSDLEALIAELNEQMLSAARELRFELAARLRDE 691

Query: 790 IKRLK 794
           +   K
Sbjct: 692 LAEYK 696


>gi|291301234|ref|YP_003512512.1| excinuclease ABC subunit B [Stackebrandtia nassauensis DSM 44728]
 gi|290570454|gb|ADD43419.1| excinuclease ABC, B subunit [Stackebrandtia nassauensis DSM 44728]
          Length = 701

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/677 (52%), Positives = 474/677 (70%), Gaps = 24/677 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +DY PSGDQP AI +L + I+  E+  +LLG TG+GK+ T A ++E +QRPA+VMA
Sbjct: 14  FTVVSDYEPSGDQPTAITELARRINGDERDVVLLGATGTGKSATAAWLVERLQRPALVMA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL  EF+   P+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++++R+RH
Sbjct: 74  HNKTLAAQLAKEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S   SLL RND +VV++VS IYG+ +   + +    +K+G+  ++  LL  LV+ QY R 
Sbjct: 134 STMHSLLTRNDVVVVATVSAIYGLVTPTEFYKHTATVKVGEEYDRDSLLRRLVEIQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD+I+I P++ E++A R+ MFG+++E++    PLTG+ +R+V  + I+
Sbjct: 194 DYAFTRGTFRVRGDTIDIIPAY-EELAVRIEMFGDEVEKLFYINPLTGEVVRHVTELVIF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + YVT       A++ I+ EL+ RL ELE++ + LE+QRL  R TYDLEM+   GSC 
Sbjct: 253 PGAAYVTSGENQERAVRDIEAELEERLAELERQSKHLESQRLRMRTTYDLEMIRQIGSCS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GR+ GEPP TL +Y PE+ +  +DESH T+PQI GMY GD  RK TL E+
Sbjct: 313 GIENYSRHFDGRSAGEPPYTLLDYFPENFITIIDESHQTVPQIGGMYEGDASRKRTLVEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPLRF+E+      T+ +SATPG WELEQ +G   EQ+IRPTGLVDP V 
Sbjct: 373 GFRLPSAMDNRPLRFDEFRERVGQTVYMSATPGPWELEQAKGQYAEQVIRPTGLVDPQVV 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI   A+   R+L+T LTK+MAEDLT+Y  + NIRVRY+HSEV TL 
Sbjct: 433 VRQTKGQIDDLMHEITERAKANERVLVTTLTKKMAEDLTDYFLDNNIRVRYLHSEVDTLR 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 493 RVELLRELRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-LE 739
           NV+ +VI+YAD IT S++ A+DET RRREKQ+ HNK+H I+P  ++++I +++D I    
Sbjct: 553 NVSGQVIMYADKITDSMRKALDETDRRREKQIAHNKEHGIDPTPLRKRIGDILDDIYATA 612

Query: 740 DAATTNISIDAQQLSLSK--------KKGK--------------AHLKSLRKQMHLAADN 777
           D   T +    +Q S  K        + G               + + +L  QM  AA  
Sbjct: 613 DDTETLVGGSGRQQSRGKAPVPQTRSRAGAVVASGEGVPREELTSMIATLNDQMLTAARE 672

Query: 778 LNFEEAARIRDEIKRLK 794
           L FE AAR RDEI  LK
Sbjct: 673 LQFEVAARYRDEIAELK 689


>gi|300787966|ref|YP_003768257.1| excinuclease ABC subunit B [Amycolatopsis mediterranei U32]
 gi|299797480|gb|ADJ47855.1| excinuclease ABC subunit B [Amycolatopsis mediterranei U32]
          Length = 726

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/689 (52%), Positives = 481/689 (69%), Gaps = 29/689 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQPAAI +L + I + EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 36  FEVVSDYQPAGDQPAAIDELERRIKAGEKDVVLLGATGTGKSATTAWLIERVQRPTLVMA 95

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +  FP+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 96  PNKTLAAQLANELRELFPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 155

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D IVV+SVSCIYG+G+ +SY     +LK G  +++   L +LV  QY R 
Sbjct: 156 SATMNLLSRRDVIVVASVSCIYGLGTPQSYLDRSSKLKAGMQLDRDVFLRALVDVQYTRN 215

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFR  GD++EI P++ E++A RV  FG++IE++   +PLTG  ++ V+ ++I+
Sbjct: 216 DIAFARGTFRARGDTVEIIPAY-EELAIRVEFFGDEIEKLYYLHPLTGDIVKEVDEVRIF 274

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A++ I++EL+ RL ELE++G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 275 PATHYVAGPERMEKAIQGIEKELEERLAELERQGKLLEAQRLRMRTAYDIEMMRQVGFCS 334

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG  P TL +Y P+D LL +DESH T+PQI GMY GD  RK  L EY
Sbjct: 335 GIENYSRHIDGRGPGTAPATLIDYFPDDFLLVIDESHQTVPQIGGMYEGDMSRKRNLVEY 394

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE++     T+ +SATPG +E+ Q  G  VEQ+IRPTGLVDP V 
Sbjct: 395 GFRLPSAVDNRPLTWEEFSDRIGQTVYLSATPGPYEMGQAGGEFVEQVIRPTGLVDPKVV 454

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+  EI   A++  R+L+T LTK+M+EDLT+YL E  IRVRY+HSEV TL 
Sbjct: 455 VKPTEGQIDDLVHEIRERAEKDERVLVTTLTKKMSEDLTDYLLELGIRVRYLHSEVDTLR 514

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 515 RVELLRQLRAGDFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAAR 574

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRREKQ+ +N++  ++PQ +++KI +++D +  E 
Sbjct: 575 NVSGEVHMYADKITDSMRHAIDETDRRREKQVAYNEERGVDPQPLRKKIADILDRVYSEA 634

Query: 741 AATTNISIDAQQLSLSKKKG----------------------KAHLKSL----RKQMHLA 774
             T  +S+     + S+ K                       +A L  L      QM  A
Sbjct: 635 EDTEQVSVGGSGRNSSRGKKPEQGDRVRSSGMLVDKNVSAMPRAQLADLIQQMTDQMMQA 694

Query: 775 ADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           A +L FE AAR+RDEI  LK     +G+D
Sbjct: 695 ARDLQFELAARLRDEISDLKKE--LRGMD 721


>gi|229916613|ref|YP_002885259.1| excinuclease ABC, B subunit [Exiguobacterium sp. AT1b]
 gi|229468042|gb|ACQ69814.1| excinuclease ABC, B subunit [Exiguobacterium sp. AT1b]
          Length = 656

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/654 (52%), Positives = 463/654 (70%), Gaps = 6/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q+++ P GDQP AI QL++G++  ++ Q LLG TG+GKTFT++ VI+ +++P +V+A
Sbjct: 6   FALQSEFQPGGDQPEAIRQLVEGVNRGDRYQTLLGATGTGKTFTVSNVIQEVKKPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 66  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+G+ E Y  +++ L++G  + + E+L  L+  QY+R 
Sbjct: 126 SATSALFERDDVIIVASVSCIYGLGNPEEYRSLVLSLRVGKEMGRDEMLRKLIDIQYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++   R+  FG++I+ I E  PLTG+ I + + + I+
Sbjct: 186 DIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIDRIREMDPLTGEIIADRDHVAIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A+  I+ EL+ +L +  +EG+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 246 PASHFVTRDEKLQKAIVNIEAELEEQLEKFREEGKLLEAQRLEQRTHYDLEMMREMGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L     G  P TL +Y PED LL  DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 306 GIENYSRHLNLMPEGSTPYTLLDYFPEDFLLVADESHVTLPQVRGMYNGDQARKQVLVDH 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F+E+       I +SATPG +ELE    +I EQIIRPTGL+DP +E
Sbjct: 366 GFRLPSAKDNRPLKFDEFEKKVSQAIFISATPGPYELEHTPNMI-EQIIRPTGLLDPTIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I   + Q++ + D+I    ++  R+L+T LTK+MAEDL++YL E  I+V YMHSE+KTLE
Sbjct: 425 IHPIKGQIDYLMDQIRERIKRDERVLVTTLTKKMAEDLSDYLREAGIKVNYMHSEIKTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSDRSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VIL+AD +T S+  AI+ET RRR  Q  +N++H I PQ++++ +  VI   +  +
Sbjct: 545 NANGHVILFADKMTDSMARAIEETDRRRSIQQAYNEEHGITPQTIRKDVRGVIRATVEAE 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                        ++   + +A +  L ++M  AA +L FE AA +RD I  LK
Sbjct: 605 EEAL-----ESLSTMKPAEREAAIAKLEEEMKQAARDLQFERAAELRDLILELK 653


>gi|186680993|ref|YP_001864189.1| excinuclease ABC subunit B [Nostoc punctiforme PCC 73102]
 gi|186463445|gb|ACC79246.1| excinuclease ABC, B subunit [Nostoc punctiforme PCC 73102]
          Length = 683

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/664 (53%), Positives = 461/664 (69%), Gaps = 12/664 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F +Q  + P+GDQP AIAQL   I S  + Q LLG TG+GKTF++A VIE + +P +
Sbjct: 19  MTEFCLQAPFSPTGDQPQAIAQLTASIQSGNRYQTLLGATGTGKTFSVAAVIEKIGKPTL 78

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E ++FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK ++IN++ID 
Sbjct: 79  VLAHNKTLAAQLCNELRDFFPNNAVEYFVSYYDYYQPEAYIPVTDTYIEKTAAINDEIDM 138

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  + L+IG  V Q+++L  L   QY
Sbjct: 139 LRHSATRSLFERRDVIVVASISCIYGLGMPAEYLKAAIPLQIGMEVNQRQILRDLANVQY 198

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ ++++E +
Sbjct: 199 SRNDIEMGRGKFRVRGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEILKSLEAV 257

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP   L  A   I  ELK + ++LE+ G+LLEAQR++QR  YDLEML   G
Sbjct: 258 NIYPARHFVTPEERLEVACHDIAAELKQQKLDLEQAGKLLEAQRIDQRTRYDLEMLREVG 317

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  G+PP  L +Y P+D LL +DESHVT+PQI GMY GD  RK  L
Sbjct: 318 YCNGVENYSRHLAGRQAGDPPECLIDYFPKDWLLIIDESHVTVPQIRGMYNGDQARKKVL 377

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+ EE+       I VSATPG+WE+E  +  ++EQ+IRPTG+VDP
Sbjct: 378 IEHGFRLPSAADNRPLKAEEFWQKVNQCIFVSATPGTWEIEVSEDHVIEQVIRPTGVVDP 437

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    Q++D+  EI   A +  R+L+T LTKRMAEDLTEYL +R+IRVRY+HSE+ 
Sbjct: 438 EISVRPTEGQIDDLLGEIKDRADRHERVLITTLTKRMAEDLTEYLQDRSIRVRYLHSEIT 497

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEI+++LR GKFDVLVG+NLLREGLD+PE  LVAI+DADKEGFLR++ SLIQTIGR
Sbjct: 498 SIERIEILQNLREGKFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRTERSLIQTIGR 557

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V  + ILYAD +T S+  AIDET RRR  Q  HN+ H I PQ + +K    I   L
Sbjct: 558 AARHVQGQAILYADNMTGSMIKAIDETDRRRGIQTAHNRLHGITPQPIVKKSSNAILAFL 617

Query: 738 -------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                    D    +  ID  +L L +  G   L  L  QM  AA  L FEEA ++RD I
Sbjct: 618 DVSRRLNATDLKVVDEHID--ELPLEQIPGLITL--LEAQMKEAAKKLEFEEAGKLRDRI 673

Query: 791 KRLK 794
           K L+
Sbjct: 674 KHLR 677


>gi|124026822|ref|YP_001015937.1| excinuclease ABC subunit B [Prochlorococcus marinus str. NATL1A]
 gi|189037986|sp|A2C5B3|UVRB_PROM1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|123961890|gb|ABM76673.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str.
           NATL1A]
          Length = 678

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/671 (53%), Positives = 466/671 (69%), Gaps = 19/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++Q  Y P GDQPAAI  L+ G++  EK Q LLG TG+GKTFT+A +I    RPA+V+A
Sbjct: 4   YKLQAPYTPKGDQPAAIKGLVGGVNDGEKFQTLLGATGTGKTFTIANLIAQTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K SSINE+ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPDNAVEYFISYYDYYQPEAYVPVSDTYIAKTSSINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER+D IVV+S+SCIYG+G    Y +  V+ ++G S++ +  L SLV  QY R 
Sbjct: 124 SATRSLFERDDVIVVASISCIYGLGIPSEYLKASVKFQVGQSIDLRSCLRSLVSNQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI I RG FRV GD +EI P++ +D   R+ +FG+++E IS   P TG+ +  +++I IY
Sbjct: 184 DIEISRGRFRVRGDVLEIGPAY-DDRLVRLELFGDEVESISYVDPTTGEILNKLDSINIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L++A+K IK+ELK RL  L +EG+LLEAQRLEQR  YDLEML+  G C 
Sbjct: 243 PAKHFVTPKDRLDSAIKAIKKELKDRLEFLNQEGKLLEAQRLEQRTIYDLEMLKEVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L+GR PG  P  L +Y P+D LL +DESHVT PQ+  MY GD  RK  L ++
Sbjct: 303 GVENYARHLSGREPGSAPECLIDYFPKDWLLLIDESHVTCPQLRAMYNGDQARKKVLIDH 362

Query: 501 GFRLPSCMDNRPLR-FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           GFRLPS  DNRPL+  E WN  +  T+ +SATPG WEL Q    IVEQ+IRPTG++DP V
Sbjct: 363 GFRLPSAADNRPLKDIEFWNKAK-QTVFISATPGDWELSQSTKNIVEQVIRPTGVLDPLV 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    QV+D+  EI   A +  RIL+T LTKRMAEDLT+YL E  IRVRY+HSE+ ++
Sbjct: 422 EVRPTHGQVDDLLFEIRKRASKNQRILVTTLTKRMAEDLTDYLSENKIRVRYLHSEIHSI 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LV ILDADKEGFLR++ SLIQTIGRAA
Sbjct: 482 ERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAQRSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL- 738
           R+V    +LYAD +T S+  AI ET RRRE Q  +N +H I P+   +K    I   L  
Sbjct: 542 RHVEGLALLYADKMTDSMAKAISETERRREIQNIYNIEHGITPKPAGKKASNSILSFLEI 601

Query: 739 -----EDAATTNISIDAQQL---SLSKKKGKAHLKS-------LRKQMHLAADNLNFEEA 783
                +D +T +    A +L   S         L+S       L  +M + A +L+FE+A
Sbjct: 602 SRRLNQDGSTDDFVDIADKLIEHSAKDSDSGVSLESLPELIEKLESKMKIKAKDLDFEKA 661

Query: 784 ARIRDEIKRLK 794
           A +RD IK+L+
Sbjct: 662 AILRDRIKKLR 672


>gi|221195727|ref|ZP_03568781.1| excinuclease ABC, B subunit [Atopobium rimae ATCC 49626]
 gi|221184493|gb|EEE16886.1| excinuclease ABC, B subunit [Atopobium rimae ATCC 49626]
          Length = 743

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/682 (51%), Positives = 467/682 (68%), Gaps = 36/682 (5%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           + + P+GDQP AI +L +GI    + Q LLGVTGSGKTF+MAK IE + RP ++M PNK 
Sbjct: 33  SSFEPAGDQPQAIQKLAQGIEEGLRYQTLLGVTGSGKTFSMAKTIEKLNRPTLIMEPNKT 92

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
           LAAQ+ SE K  FPHNAV YFVSYYDYYQPEAYVP++DTYIEK++SINE+++++RH AT 
Sbjct: 93  LAAQVASEMKELFPHNAVVYFVSYYDYYQPEAYVPQSDTYIEKDASINEEVEKLRHQATS 152

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           SLL R D IVV+SVSCIYGIGS + Y+ +   +     +E+ +L+  L+  QY R D  +
Sbjct: 153 SLLSRRDVIVVASVSCIYGIGSPQDYAGLAPNVDKSVPLERDDLIKDLIDIQYDRNDYDL 212

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            RG FRV GD +++FP + E+   R+  FG+++E I+E   +TG+ IR  + + I+  SH
Sbjct: 213 QRGMFRVRGDVVDVFPPYAEN-PLRIEFFGDEVETIAEISNVTGEVIREFDAVPIWPASH 271

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
           YVT RP +  A++ I EEL+ R+ EL+   +LLEAQRL QR +YDLEMLET G C  IEN
Sbjct: 272 YVTERPKVTHALQTISEELEHRVAELKANDKLLEAQRLAQRTSYDLEMLETMGYCNGIEN 331

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
           YSR+L GR PGEPP TL +Y P+D +  +DESHVT+PQI GMY GD  RK TL E+GFRL
Sbjct: 332 YSRHLDGRAPGEPPYTLIDYFPKDMICIIDESHVTVPQIRGMYEGDRSRKVTLVEHGFRL 391

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           PS +DNRPLRF+E+    P  I VSATPG +E E      VEQIIRPTGL+DP VE+R  
Sbjct: 392 PSALDNRPLRFDEFEARIPQFIYVSATPGDYE-ESVAQQQVEQIIRPTGLLDPSVEVRPI 450

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R Q++D+  E+     +  R+L+T LTKRMAEDLT++L +  I+V YMHS+  TL+R+ I
Sbjct: 451 RGQIDDLISEVKERVAKKERVLVTTLTKRMAEDLTDHLLDEGIKVNYMHSDTATLDRVAI 510

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I++LR GK DVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQT+GRAARN   
Sbjct: 511 IKELRQGKIDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNRRSLIQTMGRAARNAQG 570

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
            VI+YAD IT S+++AIDET RRRE Q   N +H I PQ++ + I ++   I   D A  
Sbjct: 571 SVIMYADRITDSMRIAIDETRRRRELQESFNARHGIVPQTIHKSIADISQFI---DEAAE 627

Query: 745 NI----------------------------SIDA--QQLS-LSKKKGKAHLKSLRKQMHL 773
           N+                            SI+A  ++ S L + + +  L  L   M  
Sbjct: 628 NVDKRQRKDGIFYTASGEGAETQGAPGEVDSIEAMVEEFSELPRSEVETMLAHLESDMAQ 687

Query: 774 AADNLNFEEAARIRDEIKRLKS 795
           A+ ++++E AA++RD+I R++S
Sbjct: 688 ASTDMDYERAAQLRDQIVRIRS 709


>gi|116617516|ref|YP_817887.1| excinuclease ABC subunit B [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096363|gb|ABJ61514.1| Excinuclease ABC subunit B [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 669

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/659 (51%), Positives = 475/659 (72%), Gaps = 7/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y P+GDQP AI +L+ GI++  K Q+LLG TG+GKTFT++ VI+ +++P +V++
Sbjct: 10  FEIKSKYEPTGDQPKAIEKLVGGINNHVKEQILLGATGTGKTFTISNVIKEVKKPTLVLS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S++N++ID++R+
Sbjct: 70  HNKTLAGQLYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNDEIDKLRN 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y   ++ L++G   E+ +L+  L+  Q+ R 
Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPHQYKDHVISLRVGYEYERDQLMRDLIDVQFTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD IEIFP+  +++A R+  FG++I+ I E   LTG+ I   + + I+
Sbjct: 190 DIDFHRGTFRVRGDVIEIFPASQDEMALRIEFFGDEIDRIREINSLTGETIAERDHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T    +  A+  I++E+  ++   +KEG+LLEAQR++QR  YDL MLE  G   
Sbjct: 250 PAKHFMTDDDQMQVALDGIRQEMNTQVELFKKEGKLLEAQRIKQRTEYDLAMLEEMGFVG 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ +DESHVT+PQI GM+ GD  RK TL  Y
Sbjct: 310 GIENYSRWMDGRQAGEPPFTLIDFFPDDFLIVIDESHVTMPQIRGMFNGDKARKETLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI-IVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+  E+       I +SATPG +E E+     +++QIIRPTGL+DP V
Sbjct: 370 GFRLPSALDNRPLKLPEFEKHVNQIIYMSATPGDYENERVDSKHVIQQIIRPTGLLDPEV 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI   +++  R+ +T LTKRMAEDLT+YL +  I+V Y+H+++KTL
Sbjct: 430 EVRPVMGQIDDLVGEITKRSERDERVFITTLTKRMAEDLTDYLKDLGIKVAYLHADIKTL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIRDLRLGK+DVL+GINLLREG+D+PE  LVAILDADKEGFLR+  SLIQTIGRAA
Sbjct: 490 ERTEIIRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNPRSLIQTIGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VI+YAD +T+S+  AIDET RRRE Q+++N +H I P+++K+ I ++I    + 
Sbjct: 550 RNENGHVIMYADKMTRSMLEAIDETARRREIQMQYNTQHGITPKTIKKDIRDLIS---VT 606

Query: 740 DAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            AAT    +D  +++   L K + ++ + ++  QM  AA  L+FEEAA++RD +  LK+
Sbjct: 607 HAATEEKVVDLTKVAFNDLPKDEQQSIVDNMTSQMKAAAKALDFEEAAQLRDTVMELKT 665


>gi|119961329|ref|YP_947815.1| excinuclease ABC subunit B [Arthrobacter aurescens TC1]
 gi|189037972|sp|A1R6F3|UVRB_ARTAT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|119948188|gb|ABM07099.1| excinuclease ABC, B subunit [Arthrobacter aurescens TC1]
          Length = 699

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/677 (51%), Positives = 473/677 (69%), Gaps = 26/677 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AIA+L + I++ EK  +LLG TG+GK+ T A +IE +QRP +VM 
Sbjct: 14  FEVISEFKPAGDQPTAIAELTERINNGEKDVVLLGATGTGKSATTAWLIEQVQRPTLVMV 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYV +TDT+IEK+SSINE+++R+RH
Sbjct: 74  QNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVAQTDTFIEKDSSINEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D IVV++VSCIYG+G+ E Y   +V L+ G  + +  LL   V  QY R 
Sbjct: 134 SATNALLTRRDVIVVATVSCIYGLGTPEEYIAGMVTLRKGAEMNRDHLLRKFVSMQYARN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E++A R+  FG++IE I   +PLTG+ +R+ E + ++
Sbjct: 194 DMDFHRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIENIQTLHPLTGEVLRDEEEMYVF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+K I++EL  RL  LE + +L+EAQRL  R TYDLEM++  G C 
Sbjct: 253 PASHYVAGPERMARAIKRIEDELADRLKVLEGQNKLVEAQRLRMRTTYDLEMMQQMGFCN 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GRNPG  P  L +Y P+D LL VDESHVTIPQI  MY GD  RK  L ++
Sbjct: 313 GIENYSVHIDGRNPGTAPHCLIDYFPDDFLLVVDESHVTIPQIGAMYEGDMSRKRNLVDF 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+++E+      T+ +SATPG +EL +  G  V+QIIRPTGL+DP V 
Sbjct: 373 GFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGKYELGKADGY-VQQIIRPTGLIDPEVV 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI    ++  R+L+T LTKRMAEDLT+YL    ++V Y+HS+V TL 
Sbjct: 432 VKPTKGQIDDLLGEIRTRTEKNERVLVTTLTKRMAEDLTDYLVGHGVKVEYLHSDVDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR+G FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 492 RVELLRELRMGVFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+  AI+ET RRR  Q+++N  H I+PQ +++KI ++ D +  ED
Sbjct: 552 NVSGQVHMYADRITDSMAHAIEETNRRRAIQVQYNTDHGIDPQPLRKKIADITDQLAKED 611

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS-----------------------LRKQMHLAADN 777
           A T  + ++  +L+   K+GK+  K                        L +QMH AA  
Sbjct: 612 ADTQEL-LNNNRLAKGGKRGKSAAKGAATVRQDGLAAAPAEDLVGLIEQLTEQMHGAAAE 670

Query: 778 LNFEEAARIRDEIKRLK 794
           L FE AARIRDE+K LK
Sbjct: 671 LQFEVAARIRDEVKELK 687


>gi|323340188|ref|ZP_08080452.1| excision endonuclease subunit UvrB [Lactobacillus ruminis ATCC
           25644]
 gi|323092379|gb|EFZ34987.1| excision endonuclease subunit UvrB [Lactobacillus ruminis ATCC
           25644]
          Length = 665

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/655 (53%), Positives = 468/655 (71%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIA+L  GI + E  Q+LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 10  FELCSSYKPTGDQPEAIAELTAGIKAGEHAQILLGATGTGKTFTISNVIANVNKPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LLERND IVV+SVSCI+G+G    Y Q  + L +     +  LL  LV+ Q++R 
Sbjct: 130 AATSALLERNDVIVVASVSCIFGLGDPSEYQQQALSLHVDQEYGRDRLLRELVEIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD ++IFP+  +  A R+  FG+DI+ I EF PLTG+ + + + + I+
Sbjct: 190 DIDFQRGRFRVRGDVVDIFPASSDSSALRIEFFGDDIDRICEFNPLTGEIVTDTDKVTIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A++ I++ELK RL EL  +G+LLEAQRLEQR TYD+EM+   G C 
Sbjct: 250 PATHFLTNDDRMKQALEGIEKELKERLEELRAQGKLLEAQRLEQRTTYDIEMMREMGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS+Y+  R     P TL ++ P+D LL VDESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSKYMDNRQMNR-PFTLLDFFPKDFLLVVDESHVTMPQVRGMYNGDQARKQMLVDY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRL S +DNRPL+ EE+  L    I +SATPG +E +Q    IV+QIIRPTGL+DP +E
Sbjct: 369 GFRLKSALDNRPLKLEEFEKLTNQIIYMSATPGDYEKKQTDH-IVQQIIRPTGLLDPEIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+YL E  I+V+Y+HS++KTLE
Sbjct: 428 VRPIMGQMDDLVGEINKRTEKNERVFVTTLTKKMAEDLTDYLKELGIKVKYLHSDIKTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  I+RDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 488 RTRIVRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YAD +T+S++ AIDET RRRE Q+++N++  I PQ++K++I   I       
Sbjct: 548 NANGHVIMYADEVTESMKAAIDETKRRREIQMKYNQERGIVPQTIKKEIRAAISYGDKVS 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             +   + D     LS+K  +  +  L +QM  AA  L+FEEAAR+RD +  LK+
Sbjct: 608 KKSKKKTEDFDFNDLSQKDQQEMISGLEEQMREAAKKLDFEEAARLRDTVLELKA 662


>gi|254431082|ref|ZP_05044785.1| excinuclease ABC, B subunit [Cyanobium sp. PCC 7001]
 gi|197625535|gb|EDY38094.1| excinuclease ABC, B subunit [Cyanobium sp. PCC 7001]
          Length = 671

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/660 (54%), Positives = 457/660 (69%), Gaps = 8/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y P GDQP AIA L+ G+   E+ Q LLG TG+GKTFT+A VI    RP +V+A
Sbjct: 7   FQLHAPYAPKGDQPTAIAGLVGGVEGGERYQTLLGATGTGKTFTIANVIARTGRPTLVLA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 67  HNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V  ++GD++  +  L  LV  QY R 
Sbjct: 127 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVTFQVGDTLNLRGSLRELVNNQYSRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ I RG FRV GD +EI P++ ED   R+ +FG+++E I    P TG+ ++++ETI IY
Sbjct: 187 DLEISRGRFRVRGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSLETINIY 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L  A++ I+ EL+ RL  L  +GRLLEAQRLEQR TYDLEMLE  G C 
Sbjct: 246 PAKHFVTPKERLQEAIQAIRAELRERLDVLNGQGRLLEAQRLEQRTTYDLEMLEQVGYCN 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L E+
Sbjct: 306 GVENYARHLAGREAGTPPECLIDYFPDDWLLVVDESHVTCSQLQAMYNGDQSRKQVLIEH 365

Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           GFRLPS  DNRPL+ EE W   R  TI VSATPG+WELEQ  G +VEQ+IRPTG++DP V
Sbjct: 366 GFRLPSAADNRPLKGEEFWQKAR-QTIFVSATPGNWELEQSHGQVVEQVIRPTGVLDPVV 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    QV+D+  EI + A +  R+L+T LTKRMAEDLT+YL E  +RVRY+HSE+ ++
Sbjct: 425 EVRPTEGQVDDLLGEIRVRADRQERVLVTTLTKRMAEDLTDYLAENGVRVRYLHSEIHSI 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEII+DLR G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAA
Sbjct: 485 ERIEIIQDLRNGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-- 737
           R+V    +LYAD +T S+  AI+ET RRR  Q  +N+KH I P +  ++    I   L  
Sbjct: 545 RHVEGVALLYADNLTDSMAKAIEETERRRGIQQAYNEKHGITPTAAGKRAGNAILAFLEV 604

Query: 738 ---LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              L D      +  A+   +        ++ L ++M  AA NL FEEAA +RD IK L+
Sbjct: 605 SRRLNDEQLEQATEQAEHNGVPLDSLPELIQQLEEKMKTAAKNLEFEEAANLRDRIKGLR 664


>gi|113476281|ref|YP_722342.1| excinuclease ABC subunit B [Trichodesmium erythraeum IMS101]
 gi|110167329|gb|ABG51869.1| Excinuclease ABC subunit B [Trichodesmium erythraeum IMS101]
          Length = 677

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/662 (53%), Positives = 464/662 (70%), Gaps = 14/662 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q  + P+GDQP AIAQL   I +    Q LLG TG+GKTF++A VIE + RP +V+A
Sbjct: 15  FCLQAPFQPTGDQPQAIAQLTTNIQAGHNFQTLLGATGTGKTFSIASVIENVGRPTLVLA 74

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E ++FFP N+VEYF+SYYDYYQPEAY+P TDTYIEK +SIN++ID +RH
Sbjct: 75  HNKTLAAQLCNELRDFFPDNSVEYFISYYDYYQPEAYIPVTDTYIEKTASINDEIDMLRH 134

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  + L++G+ + Q+++L  L   QY R 
Sbjct: 135 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAISLQVGEEINQRQILRDLATVQYTRN 194

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG  ++++E++ +Y
Sbjct: 195 DLNLGRGKFRVKGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGNILQSLESLNVY 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP   L  A   I+ EL  RL ELEK G+LLEAQRLEQR  YD+EML   G C 
Sbjct: 254 PARHFVTPEERLEIACNDIEVELDERLKELEKAGKLLEAQRLEQRSRYDIEMLREVGYCN 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L GR  GEPP  L +Y P+D LL +DESHVT+PQI GMY GD  RK  L E+
Sbjct: 314 GVENYSRHLVGRKAGEPPECLIDYFPKDWLLVIDESHVTVPQIRGMYNGDQARKKVLVEH 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+       I+VSATPG+WE+E+ +  IVEQIIRPTG+VDP + 
Sbjct: 374 GFRLPSATDNRPLKSEEFWEKVNQCILVSATPGNWEIEKSEDRIVEQIIRPTGVVDPKIF 433

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    +   R+L+T LTKRMAEDLTEYL +++++VRY+HSE+ +++
Sbjct: 434 VRPTEGQIDDLLGEIRERVKLEERVLITTLTKRMAEDLTEYLEDQSVKVRYLHSEINSIK 493

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI++ LR G+FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 494 RIEILQGLREGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 553

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++  + ILYAD +T S+  AIDET RRR  QL +NK +NI P+ V +K    I   L   
Sbjct: 554 HIRGQAILYADNLTDSMIKAIDETERRRGIQLAYNKMNNITPRPVVKKQSNAILAFL--- 610

Query: 741 AATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
               +  +++QQL        +LS       +K L  QM  AA NL FEEAA++RD IK 
Sbjct: 611 --DVSRRLNSQQLEEVYEQVDNLSLDDVPEWIKKLESQMKEAAKNLEFEEAAKLRDRIKH 668

Query: 793 LK 794
           L+
Sbjct: 669 LR 670


>gi|22299576|ref|NP_682823.1| excinuclease ABC subunit B [Thermosynechococcus elongatus BP-1]
 gi|81844844|sp|Q8DHC6|UVRB_THEEB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|22295760|dbj|BAC09585.1| excinuclease ABC subunit B [Thermosynechococcus elongatus BP-1]
          Length = 668

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/660 (54%), Positives = 457/660 (69%), Gaps = 6/660 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F++   + P+GDQP AI +L+ G+ +  + Q LLG TG+GKT T+A+VIEA+ RP +V
Sbjct: 4   TPFRIHAPFEPTGDQPQAIQKLVAGVQAGHRFQTLLGATGTGKTHTIARVIEALGRPTLV 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQL +E ++FFP NAVEYF+SYYDYYQPEAY+P TDTYIEK +SINE+ID +
Sbjct: 64  LAHNKTLAAQLCNELRSFFPENAVEYFISYYDYYQPEAYIPVTDTYIEKSASINEEIDML 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSATRSL ER D IVV+S+SCIYG+G    Y +  + L++G   E ++LL  L   QY 
Sbjct: 124 RHSATRSLFERRDVIVVASISCIYGLGIPAEYLKAAIPLEVGRETELRQLLRQLATIQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ + RG FRV GD +EI P++ ED   RV  FG++IE I    PLTG+ +++VE + 
Sbjct: 184 RNDVELGRGRFRVRGDVLEIGPAY-EDRIIRVEFFGDEIEAIRYVDPLTGETLQSVERLN 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY   H+VTP   L  A   I+ EL+ ++  LE + +LLEAQRL QR  YDLEML   G 
Sbjct: 243 IYPAKHFVTPAERLEAACVAIEAELQAQVANLEAQNKLLEAQRLSQRTRYDLEMLRQVGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  +ENYSR+L GR  GEPP  L +Y PE+ LL VDESHVT+PQI GMY GD  RK  L 
Sbjct: 303 CNGVENYSRHLAGRAAGEPPECLIDYFPENWLLVVDESHVTVPQIRGMYNGDQARKKVLI 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS  DNRPL+ EE+       I VSATPG WEL      +VEQIIRPTG+VDP 
Sbjct: 363 DHGFRLPSAADNRPLKPEEFWQKVQQCIFVSATPGDWEL-AVSTQVVEQIIRPTGVVDPE 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R  + QV+D+Y EI L   +  R+L+T LTKRMAEDLTEY  ER +RVRY+HSE+  
Sbjct: 422 IFVRPTQGQVDDLYGEIRLRCDRQERVLVTTLTKRMAEDLTEYFQERGVRVRYLHSEINA 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ERIEI+  LR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 482 IERIEILEALRQGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK----IMEVID 734
           AR+V  + ILYADT+T+S+Q AI ET RRR  QL +N+ H I PQ + +K    I+  +D
Sbjct: 542 ARHVRGQAILYADTLTESMQKAIQETERRRAIQLAYNQAHGIIPQPIVKKTSNAILAFLD 601

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                +A +  +        LS +     ++ L  +M  AA  L FEEAAR RD+IKRL+
Sbjct: 602 VSRRLNAESVPVLSSQTLQDLSLEDIPPLIQDLEAKMKAAAQELAFEEAARYRDQIKRLR 661


>gi|257438383|ref|ZP_05614138.1| excinuclease ABC subunit B [Faecalibacterium prausnitzii A2-165]
 gi|257199214|gb|EEU97498.1| excinuclease ABC subunit B [Faecalibacterium prausnitzii A2-165]
          Length = 685

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/654 (52%), Positives = 461/654 (70%), Gaps = 7/654 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI QL++G+   ++ Q LLGVTGSGKTFTMA VI    RP +V+A
Sbjct: 6   FHLVSNYAPTGDQPQAIEQLVEGVERGDRCQTLLGVTGSGKTFTMANVIARCNRPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF++FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++IDR+RH
Sbjct: 66  HNKTLAAQLCTEFRSFFPDNAVEYFVSYYDYYQPEAYIPSTDTYIEKDSAINDEIDRLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +G    Y  M++ L+ G  +E+ +L   LV  QY+R 
Sbjct: 126 SATAALSERRDVIIVASVSCIYSLGDPIDYRSMVISLRPGMQMERDDLCKKLVTLQYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  IR  FRV GD+++I+ +++ D+A RV  FG++I+ I+EF P+TG +   V+ + I+
Sbjct: 186 DINFIRNKFRVHGDTVDIYLAYMSDLAIRVEFFGDEIDRITEFNPVTGTRQNVVKHVAIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+        A++ I+ E   ++ +   EG+L+EAQR++QR  YD+EML   G C+
Sbjct: 246 PASHYIVSADKKAAAIEKIRAECDEQVKKFTAEGKLIEAQRIQQRTNYDIEMLTEVGICK 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  L+GR PG  P TL +Y PED LLFVDESHVT+PQ+  MY GD+ RK TL EY
Sbjct: 306 GIENYSAVLSGRAPGSMPTTLLDYFPEDFLLFVDESHVTLPQVRAMYGGDYARKKTLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE        + VSATPG +E       I +Q+IRPTGL+DP + 
Sbjct: 366 GFRLPSAFDNRPLKFEEVESKLNQMVFVSATPGEYERRNSTR-IAQQVIRPTGLLDPLIS 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV D+  EIN    +  R+L+T LTK+MAEDLT++L E+ I+V+YMH EV T E
Sbjct: 425 VRPVEGQVTDLLGEINARTAKNERVLVTTLTKKMAEDLTDFLTEQGIKVKYMHHEVDTFE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII+DLRLG  DV+VGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 485 RMEIIKDLRLGSIDVVVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S++ AI ET RRR  Q+ +N++H I P+++   +  + D I + D
Sbjct: 545 NAEGLVIMYADEVTDSMERAITETERRRAIQMAYNEEHGIVPKTI---VKAIADSIEISD 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A  N   + ++  + K + +A ++ L ++M  AA  L FE AA +RD+I RL+
Sbjct: 602 KA-ENAKRNTRR--MGKLEREAAIERLTREMKEAAKLLEFEHAAFLRDQIDRLR 652


>gi|298694090|gb|ADI97312.1| exinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           ED133]
 gi|323441393|gb|EGA99051.1| excinuclease ABC subunit B [Staphylococcus aureus O46]
          Length = 661

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   +  D
Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    AQ +    ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659


>gi|227893198|ref|ZP_04011003.1| excinuclease ABC subunit B [Lactobacillus ultunensis DSM 16047]
 gi|227864967|gb|EEJ72388.1| excinuclease ABC subunit B [Lactobacillus ultunensis DSM 16047]
          Length = 682

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/659 (51%), Positives = 466/659 (70%), Gaps = 4/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + +P +V+ 
Sbjct: 10  FELVSKFKPAGDQQQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIANLNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L+ERND +VV+SVSCIYG+G  + Y++ ++ +  G+  E+  LL  LV  QY R 
Sbjct: 130 ATTSALMERNDVVVVASVSCIYGLGDPKEYARSVLMIHEGEEYERNTLLRDLVNLQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A+R+  FG++I+ I E   LTG+ I   E+I ++
Sbjct: 190 DIDFQRGRFRVRGDIVEIFPAGNSDHAYRIEFFGDEIDRIVEVDSLTGEVIGERESISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I +E+K+++ + E EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNDEQMRRALKAISKEMKLQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDRNRKKTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +EL +     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELARTNH-KVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+QT+GRAAR
Sbjct: 489 RMRILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YADTIT S++ AI  T RRR+ Q E NK+H I P+++ + I +VI      D
Sbjct: 549 NANGEVIMYADTITDSMKAAIKATKRRRKIQKEFNKEHGITPKTIIKPIQDVISITKPTD 608

Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +    S     L+   L+ K+ K  +K+L++QM  AA  L+FEEAA +RD I  L+SS
Sbjct: 609 DSKKEKSDSFADLNFDELTAKQKKTMIKNLQEQMKEAAKKLDFEEAANLRDAIMELQSS 667


>gi|170760480|ref|YP_001788716.1| excinuclease ABC subunit B [Clostridium botulinum A3 str. Loch
           Maree]
 gi|238688800|sp|B1L280|UVRB_CLOBM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|169407469|gb|ACA55880.1| excinuclease ABC, B subunit [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 662

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/656 (52%), Positives = 463/656 (70%), Gaps = 6/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + ++P+GDQP AI  + KGI   EK Q L+GVTGSGKTFTMA +IE +Q+P +V+A
Sbjct: 4   FKVISKFNPTGDQPKAIKSIAKGIEKGEKFQTLIGVTGSGKTFTMANIIEKVQKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP+NAVEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFREFFPNNAVEYFVSYYDYYQPEAYVAQSDTYIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  LV+ QY+R 
Sbjct: 124 SATSALFERKDVIIVASVSCIYGLGNPEEYKKLTISLREGMEKDRDEIIKKLVEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD ++IFP+     A R+  FG++I+ I EF  LTG+ I  ++ I I+
Sbjct: 184 DIDFSRGTFRVKGDVLDIFPASSSSKAVRIEFFGDEIDRIKEFDVLTGETITKLKHISIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T +  L  A+K I+EEL+ R+ EL  + ++LEAQRL+QR  +D+EM+   G C 
Sbjct: 244 PASHFATSKDRLEIAIKNIEEELEERVKELVSQDKILEAQRLKQRTNFDIEMMREVGYCT 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR  G PP TL +Y P+D LLF+DESHVT+PQ+  M  GD  RK +L EY
Sbjct: 304 GIENYSRVLDGRAKGTPPQTLLDYFPQDFLLFIDESHVTLPQVKAMQAGDKSRKDSLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL F+E+       + VSATP  +ELE       EQ+IRPTGL+DP + 
Sbjct: 364 GFRLPCAYDNRPLTFKEFENKLNQVVFVSATPAKYELEYSAN-TAEQVIRPTGLLDPEII 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+Y  I    ++G RIL+T LTK+MAEDLT+YL E  ++ RY+HS++ T+E
Sbjct: 423 VKPVKGQIDDLYTSIQETIKRGFRILVTTLTKKMAEDLTDYLKEMGVKTRYLHSDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II DLR G+F VLVGINLLREGLDIPE  LV ILDADKEGFLRS+TSLIQT+GRAAR
Sbjct: 483 RMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+Y D ITKS++  I ET RRR+ Q+EHN+KH I P+++ + I EVI    + D
Sbjct: 543 NSESKVIMYGDVITKSMEKTIRETNRRRKIQMEHNEKHGIVPKTIIKDIREVIQ---ISD 599

Query: 741 AATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A      D    +L          ++   ++M  AA NL FE+AA +RD I +LK
Sbjct: 600 IAEERKEYDNLNEALKSYNNDIDKLIEKYEEEMKEAAQNLQFEKAAHLRDVIYKLK 655


>gi|87301622|ref|ZP_01084462.1| excinuclease ABC subunit B [Synechococcus sp. WH 5701]
 gi|87283839|gb|EAQ75793.1| excinuclease ABC subunit B [Synechococcus sp. WH 5701]
          Length = 668

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/659 (53%), Positives = 454/659 (68%), Gaps = 6/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q  Y P GDQP AI  L+ G+ + E+ Q LLG TG+GKTFT+A VI    RPA+V+A
Sbjct: 4   FELQAPYEPKGDQPTAIEALVDGVDAGERYQTLLGATGTGKTFTIANVIARTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G+++  +  L  LV  QY R 
Sbjct: 124 SATRSLFERQDVIVVASISCIYGLGIPSEYLKAAVRFQVGEALNLRGSLRELVNNQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +EI P++ ED   R+ +FG+++E I    P TG+ ++++ETI IY
Sbjct: 184 DVEVGRGRFRVKGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSLETINIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L +A+  I++EL  RL  L  +GRLLEAQRLEQR TYDLEML+  G C 
Sbjct: 243 PAKHFVTPKDRLESAIAAIRDELHQRLDVLHGQGRLLEAQRLEQRTTYDLEMLQQVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L E+
Sbjct: 303 GVENYARHLAGRPAGTPPECLIDYFPDDWLLVVDESHVTCSQLHAMYNGDQARKQVLVEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+  E+      TI VSATPG+WE+EQ  G + +Q+IRPTG++DP VE
Sbjct: 363 GFRLPSAADNRPLKAAEFWSKARQTIFVSATPGTWEMEQSHGHVAQQVIRPTGVLDPVVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI L A +  R L+T LTKRMAEDLT+YL E  +RVRY+HSE+ ++E
Sbjct: 423 VRPTEGQVDDLLGEIRLRAGRDERTLITTLTKRMAEDLTDYLAENGVRVRYLHSEIHSIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII+DLR G+FD LVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RIEIIQDLRNGEFDALVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           +V+   +LYAD +T S+  AI ET RRR  Q  +N+ H I P +  ++    I   L   
Sbjct: 543 HVDGTALLYADNLTDSMARAISETERRRAIQQTYNETHGIIPSAAGKRAGNAILSFLEVS 602

Query: 738 --LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              +D A T  +  A    +        +  L  +M  AA NL FEEAA +RD IK+L+
Sbjct: 603 RRAQDEAPTAEAEPASFAMVPLDALPELILELEDKMKAAAKNLEFEEAANLRDRIKKLR 661


>gi|304407653|ref|ZP_07389304.1| excinuclease ABC, B subunit [Paenibacillus curdlanolyticus YK9]
 gi|304343136|gb|EFM08979.1| excinuclease ABC, B subunit [Paenibacillus curdlanolyticus YK9]
          Length = 667

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/655 (54%), Positives = 462/655 (70%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AI +L++GI +  + Q LLG TG+GKT+T+A  I  + RP +V+A
Sbjct: 11  FKLLSDYKPQGDQPGAIRELVEGIDNGLRYQTLLGATGTGKTYTIANTIAKLNRPTLVIA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP NAV YFVSYYDY+QPEAY+P TDTYIEK+SSIN++ID++RH
Sbjct: 71  HNKTLAAQLCSEFQEFFPENAVSYFVSYYDYFQPEAYIPSTDTYIEKDSSINDEIDKLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D IVV+SVSCIYG+GS   Y  +++ L++G    +  +L  LV  QY+R 
Sbjct: 131 SATSSLFERRDVIVVASVSCIYGLGSPTEYGSLVLSLRVGMEKPRDAILHKLVDIQYQRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  IRGTFRV GD IEIFP    + A RV +FG++IE I+E   LTG+ +   + I I+
Sbjct: 191 DINFIRGTFRVRGDIIEIFPVANNERAIRVELFGDEIERITEIDVLTGEILGERDHIAIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT   T+  A+  I+ EL+ RL EL  + +LLEAQRLEQR  YD+EM++  G C 
Sbjct: 251 PASHFVTQEETMKRALVNIERELEERLAELRGQNKLLEAQRLEQRTRYDIEMMQEMGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  LT R  G  P TL +Y P+D L+ +DESHVT+PQI  MY GD  RK  L E+
Sbjct: 311 GIENYSGPLTFRERGATPYTLMDYFPDDMLIVIDESHVTLPQIRAMYNGDRARKEVLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPLRFEE+       I VSATPG +ELE C   +VEQIIRPTGLVDP +E
Sbjct: 371 GFRLPSAMDNRPLRFEEFEEKAGQMIYVSATPGPYELEHCP-TMVEQIIRPTGLVDPIIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI     +  R+L+T LTK+MAEDLT+YL +  I+VRYMHS++KTLE
Sbjct: 430 VRPTKGQIDDMLGEIRARIAKDERVLVTTLTKKMAEDLTDYLKDVGIKVRYMHSDIKTLE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLG F VLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RMQILRDLRLGTFHVLVGINLLREGLDLPEVTLVTILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+Y D IT S+  AI ET RRR  QL +N+KH I PQ++++KI  VI+   + +
Sbjct: 550 NSEGRVIMYGDKITDSMDKAIKETERRRSIQLAYNEKHGITPQTIRKKIHSVIEATKVAE 609

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++       +SKK  ++ ++ L  +M  AA NL FE AA +RD +  L++
Sbjct: 610 QKADYLTGVNAGGKMSKKDRQSVIQRLEAEMKDAAKNLQFERAAELRDALLELRA 664


>gi|119509060|ref|ZP_01628211.1| excinuclease ABC subunit B [Nodularia spumigena CCY9414]
 gi|119466226|gb|EAW47112.1| excinuclease ABC subunit B [Nodularia spumigena CCY9414]
          Length = 665

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/661 (53%), Positives = 456/661 (68%), Gaps = 6/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F +Q  + P+GDQP AIAQL   I S  + Q LLG TG+GKTF++A VIE + RP +
Sbjct: 1   MTGFCLQAPFIPTGDQPQAIAQLTSSIQSGNRYQTLLGATGTGKTFSIAAVIEKVGRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFPHNAVEYFVSYYDYYQPEAY+P +DTYIEK SSIN++ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPHNAVEYFVSYYDYYQPEAYIPVSDTYIEKTSSINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  +  +IG  V Q+++L  L   QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPSEYLKAAIPFQIGMEVNQRQILRDLASVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ IR++E +
Sbjct: 181 SRNDIEMGRGRFRVRGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEIIRSLEAV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+VTP+  L  A   I  ELK +  ELE+ G+LLEAQR++QR  YDLEML   G
Sbjct: 240 NVYPARHFVTPQERLEIACDEIAAELKQQQAELEQAGKLLEAQRIDQRTRYDLEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  G PP  L +Y P+D LL +DESHVT+PQI GMY GD  RK  L
Sbjct: 300 FCNGVENYSRHLAGRQAGAPPECLIDYFPKDWLLVIDESHVTVPQIRGMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+       I VSATPG WELE  +G I +QIIRPTG++DP
Sbjct: 360 IDHGFRLPSAADNRPLKAEEFWQKVNQCIFVSATPGDWELEISEGHIADQIIRPTGVIDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    Q++D+  EI        R+L+T LTKRMAEDLTEYL + NI+VRY+HSE+ 
Sbjct: 420 EISVRPTEGQIDDLLGEIKDRVDLQERVLITTLTKRMAEDLTEYLQDHNIKVRYLHSEIN 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEI++DLR GKFDVLVG+NLLREGLD+PE  LVAI+DADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEILQDLRAGKFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK----IMEVI 733
           AAR++  + I+YAD +T S+  AIDET RRR  Q+ +N+ H I PQ + ++    I+  +
Sbjct: 540 AARHIRGQAIMYADNMTGSMIKAIDETDRRRGIQMAYNRTHGITPQPIIKRSSNAILSFL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           D     +A    + +D     L  ++    +  L  QM  AA  L FEEA ++RD IK L
Sbjct: 600 DVSRRLNATDLKV-VDEHIDELPLEEIPGLIGKLEAQMKDAAKKLEFEEAGKLRDRIKHL 658

Query: 794 K 794
           +
Sbjct: 659 R 659


>gi|293192757|ref|ZP_06609652.1| excinuclease ABC subunit B [Actinomyces odontolyticus F0309]
 gi|292820004|gb|EFF79002.1| excinuclease ABC subunit B [Actinomyces odontolyticus F0309]
          Length = 689

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/674 (51%), Positives = 473/674 (70%), Gaps = 22/674 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI +L   I   E+  +L+G TG+GK+ T A +IE +QRPA+V+ 
Sbjct: 8   FEVISPYTPSGDQPKAIRELAARIRDGEQDAVLMGATGTGKSATTAWLIEELQRPALVLE 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH
Sbjct: 68  PNKTLAAQLAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ E Y   +++L+ G  +++  LL   V  QY R 
Sbjct: 128 SATNSLLTRRDTVVVSSVSCIYGLGTPEEYVARMIELERGMIIDRDALLRRFVAMQYVRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+IEI P + E++A R+ MFG++IE ++  +PLTG  I +V+   ++
Sbjct: 188 DLAFTRGTFRVRGDTIEIIPVY-EELAIRIEMFGDEIESLAVLHPLTGDVIDHVDHTYLF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I++EL  RL     + +LLE QRL  R T+DLEML+  GSC 
Sbjct: 247 PASHYVAGEERMKKAIASIEDELDDRLAWFRGQNKLLEEQRLRMRTTFDLEMLKEIGSCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR PG PP TL +Y P+D LL +DESHVT+PQI  M+ GD  RK TL +Y
Sbjct: 307 GVENYSRHIDGRGPGTPPHTLLDYFPDDFLLIIDESHVTVPQIGAMFEGDMSRKRTLVDY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+++E+      T+ +SATPG +ELE+  G+ VEQIIRPTGLVDP V 
Sbjct: 367 GFRLPSAMDNRPLKWDEFTERIGQTVYLSATPGPYELERSDGV-VEQIIRPTGLVDPLVV 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ +++ +  ++  R+L+T LTK+MAE+LT YL ER ++V Y+HS+V TL 
Sbjct: 426 VKPTEGQIDDLLEQVRVRVERDERVLVTTLTKKMAEELTTYLAERGVKVEYLHSDVDTLR 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LRLG FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RVELLRELRLGTFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD +T S+  AI ET RRRE Q+ +NK+H I+PQ +++KI +V D +  E 
Sbjct: 546 NVSGEVHMYADNMTDSMNEAISETMRRREIQIAYNKEHGIDPQPLRKKISDVTDMLAREQ 605

Query: 741 AATTNISIDAQQLSLSKKK-------GKAHLKSLR-------------KQMHLAADNLNF 780
             T  +     +   SK++       G+A +   R              QM +AA +L F
Sbjct: 606 VDTQTLLEGGYRKEKSKRERSDATGGGRAVISGQRAEAELAELIEELSAQMMIAAQHLQF 665

Query: 781 EEAARIRDEIKRLK 794
           E AAR+RDEI+ LK
Sbjct: 666 EVAARLRDEIEDLK 679


>gi|49483015|ref|YP_040239.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|57650099|ref|YP_185697.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           COL]
 gi|257424878|ref|ZP_05601305.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427546|ref|ZP_05603945.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430177|ref|ZP_05606561.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432878|ref|ZP_05609238.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435782|ref|ZP_05611830.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           M876]
 gi|258452966|ref|ZP_05700960.1| excinuclease ABC subunit B [Staphylococcus aureus A5948]
 gi|262049542|ref|ZP_06022412.1| excinuclease ABC subunit B [Staphylococcus aureus D30]
 gi|282903388|ref|ZP_06311279.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905168|ref|ZP_06313025.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282910404|ref|ZP_06318208.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913599|ref|ZP_06321388.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918551|ref|ZP_06326288.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           C427]
 gi|282923517|ref|ZP_06331197.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           C101]
 gi|283957590|ref|ZP_06375043.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293500643|ref|ZP_06666494.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509591|ref|ZP_06668302.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           M809]
 gi|293524177|ref|ZP_06670864.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           M1015]
 gi|294850544|ref|ZP_06791272.1| excinuclease ABC [Staphylococcus aureus A9754]
 gi|295427335|ref|ZP_06819970.1| excinuclease ABC [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|56749752|sp|Q6GIN3|UVRB_STAAR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|71153394|sp|Q5HHR0|UVRB_STAAC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|49241144|emb|CAG39822.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|57284285|gb|AAW36379.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           COL]
 gi|257272448|gb|EEV04571.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275739|gb|EEV07212.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279374|gb|EEV09975.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282293|gb|EEV12428.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284973|gb|EEV15092.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           M876]
 gi|257859477|gb|EEV82331.1| excinuclease ABC subunit B [Staphylococcus aureus A5948]
 gi|259162378|gb|EEW46950.1| excinuclease ABC subunit B [Staphylococcus aureus D30]
 gi|282314385|gb|EFB44775.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           C101]
 gi|282317685|gb|EFB48057.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           C427]
 gi|282322631|gb|EFB52953.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325796|gb|EFB56104.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282331575|gb|EFB61087.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596343|gb|EFC01304.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           C160]
 gi|283791041|gb|EFC29856.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290921140|gb|EFD98201.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095648|gb|EFE25909.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467688|gb|EFF10203.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           M809]
 gi|294822623|gb|EFG39064.1| excinuclease ABC [Staphylococcus aureus A9754]
 gi|295128723|gb|EFG58354.1| excinuclease ABC [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|329313479|gb|AEB87892.1| UvrABC system protein B [Staphylococcus aureus subsp. aureus T0131]
          Length = 663

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 9   FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 69  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 129 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I+
Sbjct: 189 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 249 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 309 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +E
Sbjct: 369 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 428 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 488 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   +  D
Sbjct: 548 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 607

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    AQ +    ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 608 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 661


>gi|317153518|ref|YP_004121566.1| excinuclease ABC subunit B [Desulfovibrio aespoeensis Aspo-2]
 gi|316943769|gb|ADU62820.1| excinuclease ABC, B subunit [Desulfovibrio aespoeensis Aspo-2]
          Length = 666

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/662 (51%), Positives = 461/662 (69%), Gaps = 12/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P GDQP AI QL  G+ +  + Q+LLG TG+GKTFTMA V+  + RPA+V+A
Sbjct: 4   FRLVSEFTPKGDQPDAIDQLAAGLGAGVRDQVLLGATGTGKTFTMANVVARLDRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+EF+  FP NAVEYFVSYYDYYQPEAY+P +D YIEK+SSIN+ ID++RH
Sbjct: 64  PNKTLAAQLYTEFRGLFPDNAVEYFVSYYDYYQPEAYLPHSDVYIEKDSSINDDIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R D ++V+SVSCIYG+GS + Y++M++ ++ G ++  + LL  LV+  Y+R 
Sbjct: 124 AATHALLTRRDVLIVASVSCIYGLGSPDFYAKMVIPVEEGQAMTMESLLGRLVEIHYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD +EI P++  + A R+  FG++IE +SE  PLTG+    +    IY
Sbjct: 184 DYDFHRGTFRVRGDVVEIIPAYSREKALRIEFFGDEIESLSETDPLTGEVRDRLRKTVIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+V+ R  L+ A + I++EL+ RL E +   RL+EAQRLEQR  YDLE++E  G C 
Sbjct: 244 PGSHFVSDRDNLDRAARDIRDELQRRLAEFKAGNRLVEAQRLEQRTMYDLEIIEELGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR+  +PP TL +Y P+D +LFVDESH+ +PQ+ GM++GD  RK TL ++
Sbjct: 304 GIENYSRHLDGRSKDQPPATLLDYFPKDFILFVDESHIALPQVGGMFKGDRSRKTTLVDF 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE+       + VSATPG  EL+  QG++VEQIIRPTGL+DP +E
Sbjct: 364 GFRLPSALDNRPLNYEEFQARIGQAVYVSATPGHLELDLAQGVVVEQIIRPTGLLDPVIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  E      +  R+L+T LTKRMAEDL EYL    +  RY+HS++ TLE
Sbjct: 424 VRKVQGQIDDLLTECKKRQARDERVLVTTLTKRMAEDLNEYLNSMGVPSRYLHSDIDTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ II+ LR G+F VLVGINLLREGLDIPE  LV ILDADKEGFLRS  SLIQT GRAAR
Sbjct: 484 RMAIIQALRAGEFFVLVGINLLREGLDIPEVSLVTILDADKEGFLRSARSLIQTFGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V+LYAD IT+S+  A+DET RRRE+Q  HN+ H I P ++++++       L  D
Sbjct: 544 NVDGRVVLYADGITRSMAEAMDETARRRERQQAHNEAHGITPTTIRKEMGN-----LFAD 598

Query: 741 -------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                   A    +I+      S K+    +K L +QM  AA  L FE AA +RD +  +
Sbjct: 599 KSEARPQGAGRLPAIEGVPAGTSVKEMHTLVKQLERQMREAARELEFERAAALRDRVALI 658

Query: 794 KS 795
           + 
Sbjct: 659 RG 660


>gi|302332467|gb|ADL22660.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 661

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTENQIDDLLSEIQTRVERNDRVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   +  D
Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    AQ +    ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659


>gi|21282449|ref|NP_645537.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485630|ref|YP_042851.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|23822291|sp|Q8NXM0|UVRB_STAAW RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56749723|sp|Q6GB72|UVRB_STAAS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|21203886|dbj|BAB94585.1| exinuclease ABC subunit B [Staphylococcus aureus subsp. aureus MW2]
 gi|49244073|emb|CAG42499.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 663

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 9   FKIHSDFEPQGDQPQAIEEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 69  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 129 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I+
Sbjct: 189 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 249 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 309 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +E
Sbjct: 369 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 428 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 488 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   +  D
Sbjct: 548 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 607

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    AQ +    ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 608 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 661


>gi|256825138|ref|YP_003149098.1| excinuclease ABC subunit B [Kytococcus sedentarius DSM 20547]
 gi|256688531|gb|ACV06333.1| Excinuclease ABC subunit B [Kytococcus sedentarius DSM 20547]
          Length = 705

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/694 (50%), Positives = 482/694 (69%), Gaps = 33/694 (4%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + +  + +  F++ ++Y P+GDQP AIA+L + I + E+  +LLG TG+GK+ T A +IE
Sbjct: 4   VTDLQRSVAPFEVVSEYDPAGDQPTAIAELTRRIEAGEQDVVLLGATGTGKSATTAWMIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 64  KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V+L +G  ++++ELL 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVRLHVGQEMDREELLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD++EI P + E++A R+  FG++IE ++   PLTG+ 
Sbjct: 184 KFVTMQYTRNDMAFQRGTFRVRGDTVEIIPMY-EELAVRIEFFGDEIEAVATLNPLTGEV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +R+ + + I+  +HYV     +  A+  I+ EL+ +L   E++G+LLEAQRL  R TYD+
Sbjct: 243 VRDEQEMYIFPATHYVAGPERMEKAISRIETELEQQLERFEQQGKLLEAQRLRMRTTYDV 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   GSC  IENYS ++ GR PG  P  L +Y PED LL +DESHVT+PQI  M+ GD
Sbjct: 303 EMMREMGSCNGIENYSLHIDGREPGSAPNCLLDYFPEDFLLVLDESHVTVPQIGAMFEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS MDNRPL++EE+      T+ +SATPG +EL +  G  VEQIIR
Sbjct: 363 MSRKRTLVDHGFRLPSAMDNRPLKWEEFLERIGQTVYLSATPGDYELAKSDG-YVEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++  + Q++D+  EI   A++  R+L+T LTK+MAEDLT+YL ER +RVR
Sbjct: 422 PTGLVDPEIVVKPTQGQIDDLLAEIRERAERNERVLVTTLTKKMAEDLTDYLLERQVRVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSEV TL RIE++++LRLG++DVLVGINLLREGLD+PE  LV+ILDADK+GFLRS  S
Sbjct: 482 YLHSEVDTLRRIELLKELRLGEYDVLVGINLLREGLDLPEVSLVSILDADKQGFLRSNRS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD +T+S+Q AIDET RRR  Q+ HN +H I+P  +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADKVTESMQYAIDETNRRRAVQIAHNTEHGIDPTPLRKKIG 601

Query: 731 EVIDPILLEDAATTNISIDAQQLSL-SKKKGKAH-------------------------- 763
           ++ + +L+E          A+     + ++G+A                           
Sbjct: 602 DITE-MLVEMQGLAGTWEGAEDPGRPTGRRGRAEAQDADVAADLAVATGDRPTDMPRAEL 660

Query: 764 ---LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              ++ L  QMH AA  L FE A R+RDEI  L+
Sbjct: 661 AQLIQQLSDQMHTAASQLQFELAGRLRDEIADLR 694


>gi|87160625|ref|YP_493443.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|161509027|ref|YP_001574686.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141224|ref|ZP_03565717.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253731387|ref|ZP_04865552.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|284023780|ref|ZP_06378178.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           132]
 gi|304381621|ref|ZP_07364271.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|87126599|gb|ABD21113.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|160367836|gb|ABX28807.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253724912|gb|EES93641.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|269940335|emb|CBI48712.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           TW20]
 gi|283470051|emb|CAQ49262.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           ST398]
 gi|302750655|gb|ADL64832.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304339984|gb|EFM05928.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|315196435|gb|EFU26786.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320139907|gb|EFW31768.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320142002|gb|EFW33830.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329723820|gb|EGG60348.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           21189]
 gi|329729697|gb|EGG66098.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           21193]
          Length = 661

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   +  D
Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    AQ +    ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659


>gi|239917621|ref|YP_002957179.1| Excinuclease ABC subunit B [Micrococcus luteus NCTC 2665]
 gi|281413888|ref|ZP_06245630.1| excinuclease ABC subunit B [Micrococcus luteus NCTC 2665]
 gi|261260087|sp|P10125|UVRB_MICLC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|239838828|gb|ACS30625.1| Excinuclease ABC subunit B [Micrococcus luteus NCTC 2665]
          Length = 709

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/688 (51%), Positives = 474/688 (68%), Gaps = 36/688 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AIA+L + + + EK  +L+G TG+GK+ T A ++E +QRP +VM 
Sbjct: 14  FEVISPYQPSGDQPKAIAELAERVEAGEKDVVLMGATGTGKSATTAWLVERLQRPTLVMV 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+RH
Sbjct: 74  QNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D IVV++VSCIYG+G+ E Y + +V L+ G  +++  LL   V+ QY R 
Sbjct: 134 SATNALLTRRDVIVVATVSCIYGLGTPEEYIEQMVTLRRGAEMDRDVLLRRFVQMQYVRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E++A R+  FG++IE I   +PLTGQ +R  E + I+
Sbjct: 194 DVDFHRGTFRVRGDTVEIIPMY-EELAVRIEFFGDEIESIQTLHPLTGQVVREEEEMYIF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I++EL+ RL ELE + +LLEAQRL  R TYDLEM++  G C 
Sbjct: 253 PASHYVAGDERMGRAITTIEDELRERLQELESQDKLLEAQRLRMRTTYDLEMMQQMGYCN 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P  L +Y P+D LL VDESHVTIPQI  MY GD  RK TL E+
Sbjct: 313 GIENYSRHIDGRPAGSAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYEGDMSRKRTLVEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+++E+      T+ +SATPG++EL Q  G  VEQIIRPTGLVDP V 
Sbjct: 373 GFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGAYELGQADGY-VEQIIRPTGLVDPQVV 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ ++I +   +  R+L+T LTKRMAEDLT+YL E  ++V Y+HS+V TL 
Sbjct: 432 VKPTEGQIDDLLEQIRVRTAKDERVLVTTLTKRMAEDLTDYLLEAGVKVEYLHSDVDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 492 RVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YA  +T S++ AI+ET RRR  Q+ +N++H I+PQ ++++I ++ D +  ED
Sbjct: 552 NVSGEVHMYAGNVTDSMRRAIEETERRRAVQIAYNEEHGIDPQPLRKRIADITDQLARED 611

Query: 741 AATTNI---------------------SID-------------AQQLSLSKKKGKAHLKS 766
           A T +                      S+D                 SL  K     ++ 
Sbjct: 612 ADTADFLKGMGGVKSGFDFGMGHRGLSSLDRAPATGEGAAAPAVDPASLPAKDLADLIEQ 671

Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + +QMH AA +L FE AAR+RDE+  LK
Sbjct: 672 MSQQMHQAAADLQFELAARLRDEVGELK 699


>gi|67921104|ref|ZP_00514623.1| Excinuclease ABC, B subunit [Crocosphaera watsonii WH 8501]
 gi|67857221|gb|EAM52461.1| Excinuclease ABC, B subunit [Crocosphaera watsonii WH 8501]
          Length = 680

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/659 (53%), Positives = 460/659 (69%), Gaps = 8/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++  + P+GDQP+AI QL K I +  + Q LLG TG+GKTF++A VIE + +P +V+A
Sbjct: 18  FNLKAPFKPTGDQPSAIKQLTKSIEAGNRFQTLLGATGTGKTFSVAAVIENIGKPTLVLA 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF+ FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID +RH
Sbjct: 78  HNKTLAAQLCNEFRQFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKTASINDEIDMLRH 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V L +G  V+Q++LL  LV  QY R 
Sbjct: 138 SATRSLFERKDVIVVASISCIYGLGMPSEYLKASVPLVVGKEVDQRQLLRDLVTIQYSRN 197

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG  + +++ I IY
Sbjct: 198 DLELQRGRFRVKGDVLEIVPAY-EDRVIRVEFFGDEIDAIRYLDPVTGDILNSLKNINIY 256

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP   L  A + I  ELK ++  LEK G+LLE QR+ QR  YDLE+L   G C 
Sbjct: 257 PARHFVTPDEQLEFACEAIDIELKQQVQCLEKAGKLLELQRINQRTRYDLELLREVGYCN 316

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L GR  G PP  L +Y P D LL VDESHVT+PQI GMY GD  RK  L ++
Sbjct: 317 GVENYSRHLAGRKAGSPPECLVDYFPRDWLLIVDESHVTVPQIRGMYNGDQARKKVLIDH 376

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+       I VSATPG+WE+EQ +  ++EQIIRPTG++DP + 
Sbjct: 377 GFRLPSAADNRPLKSEEFWDKVNQCIFVSATPGNWEIEQSEERVIEQIIRPTGVLDPEIF 436

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI    ++  R+L+T LTKRM+EDLTEY  ER+I+VRY+HSE+K++E
Sbjct: 437 VRPTEGQVDDLLGEIKQRVKRQERVLITTLTKRMSEDLTEYFQERDIKVRYLHSEIKSIE 496

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI++ LR G+FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 497 RIEILQALRNGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAEKSLIQTIGRAAR 556

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           +VN + ILY D +T S+  A++ET RRR  Q+ HNK+HNI P+ + ++    I   L   
Sbjct: 557 HVNGQAILYGDNLTDSMIKAMEETERRRNIQMAHNKRHNITPKPIIKRSSNAILSFLDIS 616

Query: 738 --LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L       +   A  L L K      ++ L +QM  AA NL FEEAA+ RD+IKRL+
Sbjct: 617 RRLNSQELEEVYTQADDLPLDKV--PELIQQLEQQMQEAAKNLEFEEAAKYRDKIKRLR 673


>gi|239636629|ref|ZP_04677631.1| excinuclease ABC subunit B [Staphylococcus warneri L37603]
 gi|239597984|gb|EEQ80479.1| excinuclease ABC subunit B [Staphylococcus warneri L37603]
          Length = 661

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/655 (52%), Positives = 470/655 (71%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P GDQP AI +++KG+   ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKLNSEFDPQGDQPEAIKKIVKGVKEGKRHQTLLGATGTGKTFTMSNVIQQVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +E+ ELL  LV  QY R 
Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMERSELLRKLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++++ I E   LTG+ IR  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEVDRIREVNYLTGEVIREREHFAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R+ G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRSLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP ++
Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTNQLVYVSATPGPYEIEHTDE-MVEQIIRPTGLLDPKID 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTENQIDDLLSEIQDRIDKNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +D +VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S++ AIDET RRR+ Q+ HN+K+ I P+++ +KI +VI   +  D
Sbjct: 546 NDRGEVIMYADKITDSMRYAIDETQRRRDIQMAHNEKYGITPKTINKKIHDVISATVESD 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               N   +  +  ++KK+ +  ++++ K+M  AA +L+FE A  +RD +  LKS
Sbjct: 606 DTNENKQTEVPK-KMTKKERQKTIENIEKEMKKAAKDLDFERATELRDMLFELKS 659


>gi|297208515|ref|ZP_06924944.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300912607|ref|ZP_07130050.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|296886770|gb|EFH25674.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300886853|gb|EFK82055.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 661

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKIHSDFEPQGDQPQAIEEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   +  D
Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    AQ +    ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659


>gi|282922055|ref|ZP_06329752.1| excinuclease ABC, B subunit [Staphylococcus aureus A9765]
 gi|282593713|gb|EFB98705.1| excinuclease ABC, B subunit [Staphylococcus aureus A9765]
          Length = 663

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 9   FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 69  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 129 SATSALFERDDVIIIASVSCIYGLGNPEEYKGLVVSVRVGMEMDRSELLRKLVDVQYTRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I+
Sbjct: 189 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 249 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 309 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +E
Sbjct: 369 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 428 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 488 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   +  D
Sbjct: 548 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 607

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    AQ +    ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 608 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 661


>gi|254302627|ref|ZP_04969985.1| excision endonuclease subunit UvrB [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322819|gb|EDK88069.1| excision endonuclease subunit UvrB [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 663

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/653 (52%), Positives = 476/653 (72%), Gaps = 4/653 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ ++Y P+GDQP AI  ++K I +  K Q+LLGVTGSGKTFT+A VIE +QRP+++
Sbjct: 4   NLFKIHSNYKPTGDQPTAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPSLI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID++
Sbjct: 64  IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     + +KEL+  L+  +Y 
Sbjct: 124 RNAATAALIHRRDVIIVASVSSIYGLGSPDTYRRMTIPIDKQTGISRKELMKRLIALRYD 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377
           R D+   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQK++ N+E I
Sbjct: 184 RNDVAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLERI 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + Y+T     +  ++ IK++LK+ + + E + +LLEAQRL QR  YDLEM+   G
Sbjct: 243 VIYPATQYLTADDDKDRIIQEIKDDLKVEVKKFEDDKKLLEAQRLRQRTEYDLEMITEIG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSRYL+G+ PGE P TLFEY P+D LLF+DESH+T+PQ+ GMY GD  RK +L
Sbjct: 303 YCKGIENYSRYLSGKKPGETPDTLFEYFPKDFLLFIDESHITVPQVRGMYNGDRARKESL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E GFRL + +DNRPLRFEE+      T+ +SATPG +E+E     I EQ+IRPTG+VDP
Sbjct: 363 VENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNHIAEQLIRPTGIVDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR  + QV+D+ DEI     +  R+L+T LTK++AE+LTEY  E  ++V+YMHS++ 
Sbjct: 423 EIEIRPTKNQVDDLLDEIRKRVAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTIGR
Sbjct: 483 TLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  ++I+P+S+ ++I E  D I 
Sbjct: 543 AARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYNHIDPKSIIKEIAE--DLIN 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           L+         + +++  +K   +  +  L K++    + L+FE+A  +RDE+
Sbjct: 601 LDYGIEEKKFENDKKVFRNKTDIEKEITKLEKKIKKLVEELDFEQAIVLRDEM 653


>gi|282899442|ref|ZP_06307409.1| Excinuclease ABC, B subunit [Cylindrospermopsis raciborskii CS-505]
 gi|281195706|gb|EFA70636.1| Excinuclease ABC, B subunit [Cylindrospermopsis raciborskii CS-505]
          Length = 665

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/658 (53%), Positives = 464/658 (70%), Gaps = 6/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q  + P+GDQP AIA+++K I  +++ Q LLG TG+GKTF++A VIE + +P +V+A
Sbjct: 4   FTLQAPFSPTGDQPQAIAEMIKNIEGKQRYQTLLGATGTGKTFSIAAVIEKVGKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFPHNAVEYFVSYYDYYQPEAY+P TDTYIEK S+IN +ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPHNAVEYFVSYYDYYQPEAYIPVTDTYIEKTSAINSEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  + L+IG  ++ +E++  L+  QY R 
Sbjct: 124 SATRSLFEREDVIVVTSISCIYGLGMPAEYLKAAITLEIGMEIDPREVIRKLISVQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI I RG FRV GD IEI P++ ED   RV  FG+DI+ I    P+ G+ + ++E I IY
Sbjct: 184 DIEIGRGKFRVRGDVIEIGPAY-EDRIVRVEFFGDDIDAIRYVDPVKGEIMSSLERISIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L  A   I +ELK   ++LE+ G+L+EAQR++QR  YD+E+L   G C 
Sbjct: 243 PARHFVTPKERLEIACLEISDELKAYKLKLEELGKLVEAQRIDQRTRYDIELLREVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSRYL GR  GEPP  L +Y P+D LL +DESHVT+PQI GMY GD  RK  L ++
Sbjct: 303 GVENYSRYLAGRQAGEPPECLIDYFPQDWLLVIDESHVTVPQIRGMYNGDQARKKVLIDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+       I VSATPG WE+E     IVEQIIRPTG++DP + 
Sbjct: 363 GFRLPSAGDNRPLKAEEFWQKVSQCIFVSATPGDWEIEVSGKNIVEQIIRPTGVLDPQIY 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+++  EI+       R+L+T LTKRMAEDLTEYL  R++RVRY+HSE+ +++
Sbjct: 423 VRPTAGQVDNLLGEIHERVDNNERVLITTLTKRMAEDLTEYLENRSVRVRYLHSEINSIQ 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI++DLR G FDVLVG+NLLREGLD+PE  LV I+DADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RIEILQDLRNGSFDVLVGVNLLREGLDLPEVSLVVIMDADKEGFLRAERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK----IMEVIDPI 736
           +++ KVI+YAD +T S+  AI+ET RRR  Q+ +NK HNI PQ V +K    I+  +D  
Sbjct: 543 HLHGKVIMYADNLTGSMIKAIEETDRRRGIQMAYNKIHNITPQPVFKKSGNSILSFLDVS 602

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              +A    + +D Q   L+ ++    + +L KQMH AA  + FE AA++RD IK L+
Sbjct: 603 RRLNANDLKL-VDEQWHDLNLEEIPQLITTLEKQMHDAAKKMEFEHAAKLRDRIKSLR 659


>gi|295425570|ref|ZP_06818259.1| excision endonuclease subunit UvrB [Lactobacillus amylolyticus DSM
           11664]
 gi|295064746|gb|EFG55665.1| excision endonuclease subunit UvrB [Lactobacillus amylolyticus DSM
           11664]
          Length = 681

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/658 (51%), Positives = 468/658 (71%), Gaps = 3/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + +P +V++
Sbjct: 10  FELVSKYSPAGDQQQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +L+ERND IVV+SVSCIYG+G    Y++ ++ L  GD +E+  LL  LV  QY R 
Sbjct: 130 AATSALMERNDVIVVASVSCIYGLGDPREYARSVLTLHEGDEIERNVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+     A+R+  FG++I+ I E   LTG+     E+I ++
Sbjct: 190 DIDFGRGRFRVRGDVVEVFPAGNSKHAYRIEFFGDEIDRIVEIDSLTGEIFGERESISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A++ I +E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNDEQMRRALQAISQEMNVQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ +DESH T+P++  MY GD +RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLILIDESHATMPELRAMYNGDRNRKKTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERTNH-KVEQIIRPTGLLDPKVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVGEINKRIERNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+QT+GRAAR
Sbjct: 489 RMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N + +VI+YAD+IT S++ AID T RRR+ Q+E NK+H I P+++ + I + I     ++
Sbjct: 549 NAHGEVIMYADSITDSMREAIDATNRRRKIQMEFNKEHGITPKTIIKPIRQAISATKQVD 608

Query: 740 DAATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D    + S  D     L+KK+ +  + SL+ QM  AA  L+FEEAA +RD +  L+ S
Sbjct: 609 DKYKKSDSFADLNFDELTKKQKEKMIDSLKAQMQEAAKKLDFEEAANLRDAMMELQKS 666


>gi|253315807|ref|ZP_04839020.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
          Length = 661

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/658 (52%), Positives = 472/658 (71%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI +++ GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKIHSDFEPQGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E    +I EQIIRPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMI-EQIIRPTGLLDPKIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   +  D
Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    AQ +    ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659


>gi|72383085|ref|YP_292440.1| excinuclease ABC subunit B [Prochlorococcus marinus str. NATL2A]
 gi|90111044|sp|Q46IE1|UVRB_PROMT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|72002935|gb|AAZ58737.1| Excinuclease ABC subunit B [Prochlorococcus marinus str. NATL2A]
          Length = 678

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/671 (53%), Positives = 465/671 (69%), Gaps = 19/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++Q  Y P GDQPAAI  L+ G++  EK Q LLG TG+GKTFT+A +I    RPA+V+A
Sbjct: 4   YKLQAPYTPKGDQPAAIKGLVGGVNDGEKFQTLLGATGTGKTFTIANLIAQTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K SSINE+ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPDNAVEYFISYYDYYQPEAYVPVSDTYIAKTSSINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER+D IVV+S+SCIYG+G    Y +  V+ ++G S++ +  L SLV  QY R 
Sbjct: 124 SATRSLFERDDVIVVASISCIYGLGIPSEYLKASVKFQVGQSIDLRSCLRSLVSNQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI I RG FRV GD +EI P++ +D   R+ +FG+++E IS   P TG+ +  +++I IY
Sbjct: 184 DIEISRGRFRVRGDVLEIGPAY-DDRLVRLELFGDEVESISYVDPTTGEILNKLDSINIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L++A+K IK+ELK RL  L +EG+LLEAQRLEQR  YDLEML+  G C 
Sbjct: 243 PAKHFVTPKDRLDSAIKAIKKELKDRLEFLNQEGKLLEAQRLEQRTIYDLEMLKEVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L+GR PG  P  L +Y P+D LL +DESHVT PQ+  MY GD  RK  L ++
Sbjct: 303 GVENYARHLSGREPGSAPECLIDYFPKDWLLLIDESHVTCPQLRAMYNGDQARKKVLIDH 362

Query: 501 GFRLPSCMDNRPLR-FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           GFRLPS  DNRPL+  E WN  +  T+ +SATPG WEL Q    IVEQ+IRPTG++DP V
Sbjct: 363 GFRLPSAADNRPLKDIEFWNKAK-QTVFISATPGDWELSQSTKNIVEQVIRPTGVLDPLV 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    QV+D+  EI   A +  RIL+T LTKRMAEDLT+YL E  IRVRY+HSE+ ++
Sbjct: 422 EVRPTHGQVDDLLFEIRKRASKNQRILVTTLTKRMAEDLTDYLSENKIRVRYLHSEIHSI 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LV ILDADKEGFLR++ SLIQTIGRAA
Sbjct: 482 ERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAQRSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL- 738
           R+V    +LYAD +T S+  AI ET RRRE Q  +N +H I P+   +K    I   L  
Sbjct: 542 RHVEGLALLYADKMTDSMAKAISETERRREIQNIYNIEHGITPKPAGKKASNSILSFLEI 601

Query: 739 -----EDAATTNISIDAQQL---SLSKKKGKAHLKS-------LRKQMHLAADNLNFEEA 783
                +D +T +    A +L   S         L+S       L  +M + A +L+FE A
Sbjct: 602 SRRLNQDGSTDDFVDIADKLIEHSAKDSDSGVSLESLPELIEKLESKMKIKAKDLDFETA 661

Query: 784 ARIRDEIKRLK 794
           A +RD IK+L+
Sbjct: 662 AILRDRIKKLR 672


>gi|82750463|ref|YP_416204.1| excinuclease ABC subunit B [Staphylococcus aureus RF122]
 gi|82655994|emb|CAI80399.1| exinuclease ABC subunit B [Staphylococcus aureus RF122]
          Length = 663

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 9   FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 69  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 129 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I+
Sbjct: 189 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 249 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 309 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVDH 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +E
Sbjct: 369 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 428 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 488 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   +  D
Sbjct: 548 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISANVEND 607

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    AQ +    ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 608 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 661


>gi|68535902|ref|YP_250607.1| excinuclease ABC subunit B [Corynebacterium jeikeium K411]
 gi|68263501|emb|CAI36989.1| excinuclease ABC, subunit B [Corynebacterium jeikeium K411]
          Length = 715

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/678 (51%), Positives = 475/678 (70%), Gaps = 25/678 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI +L + +   E+  +L+G TG+GK+ T A +IE  QRP +VMA
Sbjct: 28  FEVISDYKPAGDQPKAIEELHQRLDRGERDVVLMGATGTGKSATAAWLIEKEQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E ++  P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH
Sbjct: 88  PNKTLAAQLANELRSLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VVSSVSCIYG+G+ +SY    V LK+ + VE+   L  LV  QY R 
Sbjct: 148 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLKVDEEVERDRFLRLLVDIQYSRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+++I P++ E++A RV  FG+DI+ +   +PLTG  IR V+ ++I+
Sbjct: 208 DVAFTRGTFRVKGDTVDIIPAY-EELAVRVEFFGDDIDALYYIHPLTGDVIRQVDELRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  AM+ IKEEL  RL ELE  G+LLEAQRL  R  YDLEM++  G   
Sbjct: 267 PATHYVAGPERMEKAMQAIKEELAQRLEELENRGKLLEAQRLRMRTEYDLEMIQQVGFTS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM+ GD  RK  L E+
Sbjct: 327 GIENYSRHIDGRAAGSAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEH 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE++  +   + +SATPG +E+   QG  VEQ+IRPTGLVDP VE
Sbjct: 387 GFRLPSALDNRPLTWEEFDDRKGQCVYMSATPGDYEIAAAQGEYVEQVIRPTGLVDPKVE 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ ++I    ++  R+L+T LTKRMAEDLT+YL E  ++VRYMHS++ TL+
Sbjct: 447 VRPTEGQIDDLIEQIRQRTEKNERVLVTTLTKRMAEDLTDYLLEHGVKVRYMHSDIDTLK 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +VI+YAD +T S+Q AIDET RRR KQ+ +N++H I+PQ +++KI +++D +   +
Sbjct: 567 NVSGEVIMYADQVTDSMQYAIDETERRRAKQIAYNEEHGIDPQPLRKKIADILDQVAELE 626

Query: 741 A------------------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
           A                        A   +   + +  +++ + +  ++ + +QM  AA 
Sbjct: 627 AESGADAAGGAGADSSAGGRGESPEADWALVRGSSEEPMARPQLEKLIQEMTEQMKSAAK 686

Query: 777 NLNFEEAARIRDEIKRLK 794
            L FE A R+RDEI  LK
Sbjct: 687 ELKFELAGRLRDEIADLK 704


>gi|187776676|ref|ZP_02993149.1| hypothetical protein CLOSPO_00191 [Clostridium sporogenes ATCC
           15579]
 gi|187775335|gb|EDU39137.1| hypothetical protein CLOSPO_00191 [Clostridium sporogenes ATCC
           15579]
          Length = 665

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/656 (52%), Positives = 466/656 (71%), Gaps = 6/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + ++P+GDQP AI  + KGI + EK Q L+GVTGSGKTFTMA +IE +Q+P +V+A
Sbjct: 7   FKVISKFNPTGDQPKAIKAIAKGIENGEKFQTLIGVTGSGKTFTMANIIEKVQKPTLVLA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF++FFP+++VEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID++RH
Sbjct: 67  HNKTLAAQLCSEFRDFFPNSSVEYFVSYYDYYQPEAYVAQSDTYIEKDASINDEIDKLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  LV+ QY+R 
Sbjct: 127 SATAALFERRDVIIVASVSCIYGLGNPEEYKKLTISLREGMEKDRDEIIKKLVEIQYERN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD ++IFP+   + A RV  FG++I+ I EF  LTG+ I  ++ + I+
Sbjct: 187 DIDFSRGTFRVKGDVLDIFPAASSNKAIRVEFFGDEIDRIKEFDSLTGETITKLKHVSIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T +  L  A+K I+EEL+ R+ EL  + ++LEAQRL+QR  +D+EM+   G C 
Sbjct: 247 PASHFATSKDRLEIAIKSIEEELEERVKELVSQDKILEAQRLKQRTNFDIEMMREVGYCT 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR  G  P TL +Y P+D LLF+DESHVT+PQ+  M  GD  RK +L EY
Sbjct: 307 GIENYSRVLDGRAKGTSPQTLLDYFPDDFLLFIDESHVTLPQVKAMQAGDKSRKDSLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL F E+       + VSATP  +ELE     I EQ+IRPTGL+DP + 
Sbjct: 367 GFRLPCAYDNRPLTFNEFENKLNQVVFVSATPAKYELEHSTN-IAEQVIRPTGLLDPEII 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+Y  I    ++G RIL+T LTK+MAEDLT+YL E  I+ RY+HS++ T+E
Sbjct: 426 VKPVKGQIDDLYANIQETIKRGFRILVTTLTKKMAEDLTDYLKEMGIKTRYLHSDIDTIE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II DLR G+F VLVGINLLREGLDIPE  LV ILDADKEGFLRS+TSLIQT+GRAAR
Sbjct: 486 RMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+Y D ITKS++  I+ET RRR+ Q+E+N+KH I P+++ + I EVI    + D
Sbjct: 546 NSESKVIMYGDVITKSMEKTIEETNRRRKIQMEYNEKHGIVPKTIIKDIREVIQ---ISD 602

Query: 741 AATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A      D    +L          ++   K+M  AA NL FE+AA +RD I +LK
Sbjct: 603 IAEEREEYDNLNEALKSYNNDIDKLIEQYEKEMREAAQNLQFEKAAHLRDVIYKLK 658


>gi|225022614|ref|ZP_03711806.1| hypothetical protein CORMATOL_02656 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305682155|ref|ZP_07404959.1| excinuclease ABC, B subunit [Corynebacterium matruchotii ATCC
           14266]
 gi|224944522|gb|EEG25731.1| hypothetical protein CORMATOL_02656 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658628|gb|EFM48131.1| excinuclease ABC, B subunit [Corynebacterium matruchotii ATCC
           14266]
          Length = 684

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/685 (52%), Positives = 481/685 (70%), Gaps = 14/685 (2%)

Query: 130 SINNHSK--DITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183
           S+N+H +  DI      F++ +DY P+GDQPAAIA+L + I+  E+  +LLG TG+GK+ 
Sbjct: 3   SVNSHHQPDDIARTPGRFEVISDYQPAGDQPAAIAELTQRINRGERDIILLGATGTGKSA 62

Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243
           T A +IE +QRP ++MAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDT
Sbjct: 63  TAAWLIEQVQRPTLIMAPNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDT 122

Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303
           YIEK+S+IN+ ++R+RH AT SLL R D +VVSSVSCIYG+G+ ++Y    V L  GD +
Sbjct: 123 YIEKDSAINDDVERLRHRATSSLLSRRDVVVVSSVSCIYGLGNPQTYLDRSVLLNTGDEI 182

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           ++   L  LV  QY+R DIG  RG FRV GD+I+I P++ E+ A RV  FG++I+ +   
Sbjct: 183 DRDHFLRLLVDIQYERNDIGFTRGAFRVKGDTIDIIPAY-EETAVRVEFFGDEIDALYHI 241

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
            PLTG  I   +TI+I+  +HYV     ++ A   IK EL  RL +LE  G+LLEAQRL 
Sbjct: 242 NPLTGDIISQADTIRIFPATHYVATPERMHRATCDIKAELADRLKDLENRGKLLEAQRLR 301

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
            R  YDLEM+E  G C  IENYSR+L GR+ G  P TL +Y P+D L  +DESHVT+PQI
Sbjct: 302 MRTEYDLEMIEQVGFCSGIENYSRHLDGRSAGSAPATLLDYFPDDFLTIIDESHVTVPQI 361

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
             M+ GD  RK  L E+GFRLPS +DNRPL +EE+      T+ +SATPG +EL    G 
Sbjct: 362 GAMFEGDMSRKRNLVEFGFRLPSALDNRPLTWEEFEERVGQTVYMSATPGRYELTAAGGE 421

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
            VEQ+IRPTGLVDP + ++    Q++D+  EI     +  R+L+T LTK+MAEDLT+YL 
Sbjct: 422 YVEQVIRPTGLVDPKITVKPTTGQIDDLIGEIRTRTAKNERVLVTTLTKKMAEDLTDYLL 481

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +  I+VRY+HS+V TL+R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEG
Sbjct: 482 DTGIKVRYLHSDVDTLQRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEG 541

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           FLRS TSLIQTIGRAARNV+ +VI+YAD IT S+Q AIDET RRR+KQ+ +N +H I+PQ
Sbjct: 542 FLRSTTSLIQTIGRAARNVSGEVIMYADKITDSMQYAIDETERRRKKQIAYNTEHGIDPQ 601

Query: 724 SVKEKIMEVIDPIL---LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
            +++KI +++D +     ED     ++I  Q  S ++   +  + +L   M  AA +LNF
Sbjct: 602 PLRKKIADILDQLTDTPHEDTPDDLVAITHQPNSTTEI--QQLITTLTTHMGDAARDLNF 659

Query: 781 EEAARIRDEIKRLKSSPYFQGLDDS 805
           E AAR+RDEI  LK     +G+ D+
Sbjct: 660 ELAARLRDEIADLKKQ--LRGMKDA 682


>gi|148267218|ref|YP_001246161.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393267|ref|YP_001315942.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           JH1]
 gi|255005549|ref|ZP_05144150.2| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|269202379|ref|YP_003281648.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           ED98]
 gi|296275167|ref|ZP_06857674.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           MR1]
 gi|147740287|gb|ABQ48585.1| Excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945719|gb|ABR51655.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           JH1]
 gi|262074669|gb|ACY10642.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           ED98]
 gi|315129444|gb|EFT85437.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329724619|gb|EGG61126.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           21172]
          Length = 661

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/658 (52%), Positives = 472/658 (71%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI +++ GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKIHSDFEPQGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   +  D
Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    AQ +    ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659


>gi|15923748|ref|NP_371282.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926435|ref|NP_373968.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           N315]
 gi|156979086|ref|YP_001441345.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257794921|ref|ZP_05643900.1| excinuclease ABC, B subunit [Staphylococcus aureus A9781]
 gi|258418237|ref|ZP_05682502.1| excinuclease ABC subunit B [Staphylococcus aureus A9763]
 gi|258421534|ref|ZP_05684459.1| excinuclease ABC, B subunit [Staphylococcus aureus A9719]
 gi|258430729|ref|ZP_05688441.1| exinuclease ABC subunit B [Staphylococcus aureus A9299]
 gi|258440950|ref|ZP_05690785.1| exinuclease ABC subunit B [Staphylococcus aureus A8115]
 gi|258445780|ref|ZP_05693957.1| exinuclease ABC subunit B [Staphylococcus aureus A6300]
 gi|258449591|ref|ZP_05697693.1| exinuclease ABC subunit B [Staphylococcus aureus A6224]
 gi|258453991|ref|ZP_05701963.1| exinuclease ABC subunit B [Staphylococcus aureus A5937]
 gi|282895054|ref|ZP_06303275.1| excinuclease ABC, B subunit [Staphylococcus aureus A8117]
 gi|282926624|ref|ZP_06334254.1| excinuclease ABC, B subunit [Staphylococcus aureus A10102]
 gi|295406480|ref|ZP_06816286.1| excinuclease ABC [Staphylococcus aureus A8819]
 gi|297245206|ref|ZP_06929080.1| excinuclease ABC [Staphylococcus aureus A8796]
 gi|54039843|sp|P67425|UVRB_STAAN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|54042751|sp|P67424|UVRB_STAAM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|13700649|dbj|BAB41946.1| exinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246527|dbj|BAB56920.1| exinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156721221|dbj|BAF77638.1| exinuclease ABC subunit B [Staphylococcus aureus subsp. aureus Mu3]
 gi|257788893|gb|EEV27233.1| excinuclease ABC, B subunit [Staphylococcus aureus A9781]
 gi|257839030|gb|EEV63509.1| excinuclease ABC subunit B [Staphylococcus aureus A9763]
 gi|257842460|gb|EEV66884.1| excinuclease ABC, B subunit [Staphylococcus aureus A9719]
 gi|257849401|gb|EEV73371.1| exinuclease ABC subunit B [Staphylococcus aureus A9299]
 gi|257852464|gb|EEV76385.1| exinuclease ABC subunit B [Staphylococcus aureus A8115]
 gi|257855356|gb|EEV78294.1| exinuclease ABC subunit B [Staphylococcus aureus A6300]
 gi|257857099|gb|EEV79998.1| exinuclease ABC subunit B [Staphylococcus aureus A6224]
 gi|257863856|gb|EEV86612.1| exinuclease ABC subunit B [Staphylococcus aureus A5937]
 gi|282591517|gb|EFB96589.1| excinuclease ABC, B subunit [Staphylococcus aureus A10102]
 gi|282762550|gb|EFC02689.1| excinuclease ABC, B subunit [Staphylococcus aureus A8117]
 gi|285816460|gb|ADC36947.1| Excinuclease ABC subunit B [Staphylococcus aureus 04-02981]
 gi|294968625|gb|EFG44648.1| excinuclease ABC [Staphylococcus aureus A8819]
 gi|297177877|gb|EFH37126.1| excinuclease ABC [Staphylococcus aureus A8796]
          Length = 663

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/658 (52%), Positives = 472/658 (71%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI +++ GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 9   FKIHSDFEPQGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 69  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 129 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I+
Sbjct: 189 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 249 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 309 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +E
Sbjct: 369 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 428 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 488 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   +  D
Sbjct: 548 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 607

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    AQ +    ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 608 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 661


>gi|312829250|emb|CBX34092.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           ECT-R 2]
          Length = 661

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/658 (52%), Positives = 472/658 (71%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI +++ GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKIHSDFEPKGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   +  D
Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    AQ +    ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659


>gi|295094304|emb|CBK83395.1| excinuclease ABC, B subunit [Coprococcus sp. ART55/1]
          Length = 662

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/656 (52%), Positives = 477/656 (72%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L+KG     + + LLGVTGSGKTFTMA VI+ + +P +++A
Sbjct: 4   FELVSEYKPTGDQPEAIEKLVKGFQEGNQFETLLGVTGSGKTFTMANVIQQLNKPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYV  TDTYI K+SSIN+ IDRMRH
Sbjct: 64  HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVASTDTYIAKDSSINDDIDRMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L++R D IVV+SVSCIYGIG  + Y   ++  ++G   ++ +++  L   QY R 
Sbjct: 124 SATAALIDRKDVIVVASVSCIYGIGDPDEYRNQMLSFRVGMIKDRDQVIDELTDIQYDRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RGTFRV GD +EI P    D   R+  FG++I+ I+EF PLTG+  R++    ++
Sbjct: 184 DMDLQRGTFRVRGDVLEIIPVSTFDDGIRIEFFGDEIDRITEFDPLTGEGKRDLTYTCLF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  +  +  A+K I+ ELK R+   + + +L+EAQR+E+R  +D+EM+  TG C 
Sbjct: 244 PASHYVVGQEKMEKALKRIEAELKDRVAYFKSKDKLIEAQRIEERTNFDMEMMRETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  L GR+ GE P TL ++  +D LL +DESH+T+PQ+  MY GD  RK  L +Y
Sbjct: 304 GIENYSGPLAGRSAGETPSTLLDFFDDDFLLIIDESHMTVPQVGAMYSGDRSRKMNLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATPG +E E+ Q ++ EQIIRPTGL+DPPVE
Sbjct: 364 GFRLPSALDNRPLNFSEFEQKLDQVMFVSATPGKYE-EEHQMLMAEQIIRPTGLLDPPVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+    +QG ++L+T LTKRMAEDLT Y+ + +I+V+Y+HS++ T+E
Sbjct: 423 VRPVEGQIDDLLKEVRKETEQGHKVLVTTLTKRMAEDLTSYMRDNDIKVKYLHSDIDTME 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RVEIVRDLRLGVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YADTIT S++ A+DET+RRRE Q ++N++H I P+++++ I ++I  I ++ 
Sbjct: 543 NVDGHVIMYADTITGSMKYALDETSRRREIQQKYNEEHGITPKTIEKSIRDLI-TIEVKK 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
               +   DA+  S++KK+ +  +  L K+M++AA +LNFE AA IRD++K  K++
Sbjct: 602 EELPDEDKDAE--SMTKKELQKVIAKLTKKMNMAAADLNFEVAAEIRDQLKVYKAA 655


>gi|168181962|ref|ZP_02616626.1| excinuclease ABC, B subunit [Clostridium botulinum Bf]
 gi|237796846|ref|YP_002864398.1| excinuclease ABC subunit B [Clostridium botulinum Ba4 str. 657]
 gi|259710323|sp|C3KV20|UVRB_CLOB6 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|182674913|gb|EDT86874.1| excinuclease ABC, B subunit [Clostridium botulinum Bf]
 gi|229261871|gb|ACQ52904.1| excinuclease ABC, B subunit [Clostridium botulinum Ba4 str. 657]
          Length = 662

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/656 (52%), Positives = 462/656 (70%), Gaps = 6/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + ++P+GDQP AI  + KGI   EK Q L+GVTGSGKTFTMA +IE  Q+P +V+A
Sbjct: 4   FKVISKFNPTGDQPKAIKSIAKGIEKGEKFQTLIGVTGSGKTFTMANIIEKAQKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP+NAVEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFREFFPNNAVEYFVSYYDYYQPEAYVAQSDTYIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  LV+ QY+R 
Sbjct: 124 SATSALFERKDVIIVASVSCIYGLGNPEEYKKLTISLREGMEKDRDEIIKKLVEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD ++IFP+     A RV  FG++I+ I EF  LTG+ I  ++ I I+
Sbjct: 184 DIDFSRGTFRVKGDVLDIFPASSSSKAIRVEFFGDEIDRIKEFDVLTGETITKLKHISIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T +  L  A+K I+EEL+ R+ EL  + ++LEAQRL+QR  +D+EM+   G C 
Sbjct: 244 PASHFATSKDRLEIAIKNIEEELEERVKELVSQDKILEAQRLKQRTNFDIEMMREVGYCT 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR  G PP TL +Y P+D LLF+DESHVT+PQ+  M  GD  RK +L EY
Sbjct: 304 GIENYSRVLDGRAKGTPPQTLLDYFPQDFLLFIDESHVTLPQVKAMQAGDKSRKDSLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL F+E+       + VSATP  +ELE       EQ+IRPTGL+DP + 
Sbjct: 364 GFRLPCAYDNRPLTFKEFENKLNQIVFVSATPAKYELEYSTN-TAEQVIRPTGLLDPEII 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+Y  I    ++G RIL+T LTK+MAEDLT+YL E  ++ RY+HS++ T+E
Sbjct: 423 VKPVKGQIDDLYTSIQETIKKGFRILVTTLTKKMAEDLTDYLKEMGVKTRYLHSDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II DLR G+F VLVGINLLREGLDIPE  LV ILDADKEGFLRS+TSLIQT+GRAAR
Sbjct: 483 RMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+Y D ITKS++  I ET RRR+ Q+E+N+KH I P+++ + I EVI    + D
Sbjct: 543 NSESKVIMYGDVITKSMEKTIKETNRRRKIQMEYNEKHGIVPKTIIKDIREVIQ---ISD 599

Query: 741 AATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A      D    +L          ++   ++M  AA NL FE+AA +RD I +LK
Sbjct: 600 IAEERKEYDNLNEALKSYNNDIDKLIEKYEEEMREAAQNLQFEKAAHLRDVIYKLK 655


>gi|33862205|ref|NP_893766.1| excinuclease ABC subunit B [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|81835535|sp|Q7UZL3|UVRB_PROMP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|33634423|emb|CAE20108.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 679

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/670 (51%), Positives = 469/670 (70%), Gaps = 17/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++Q  Y P+GDQP AI +L++G++S E+ Q LLG TG+GKTFT+A VI+   RPA+++A
Sbjct: 4   YKLQAPYQPNGDQPKAIKKLVQGVNSGEEFQTLLGATGTGKTFTIANVIQQTGRPALILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 64  HNKTLAAQLCNELRQFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V+  +G+S++ +  L +LV  QY R 
Sbjct: 124 SATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFAVGESIDLRSSLRALVDNQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I RG FR+ GD +EI P++ ED   R+ +FG++IE I    PLTG+ + +++ + +Y
Sbjct: 184 DTEITRGRFRIKGDVLEIGPAY-EDRLIRIELFGDEIEAIRFVDPLTGEILESLDQVSVY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L++A+  I+ ELK +L +   EG+LLEAQRLEQR  YDLEML   G C 
Sbjct: 243 PAKHFVTPKERLDSAISAIRNELKEQLDKFAYEGKLLEAQRLEQRTKYDLEMLREVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT PQ+  MY GD  RK  L ++
Sbjct: 303 GVENYARHLAGREEGTPPECLIDYFPKDWLLVVDESHVTCPQLHAMYNGDQARKKVLIDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+      T+ +SATPG WEL+QC+G  +EQ+IRPTG++DP ++
Sbjct: 363 GFRLPSAADNRPLKCEEFWEKSRQTLFISATPGQWELDQCEGKFIEQVIRPTGVLDPIID 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  Q++D+  EI + A++  R+L+T LTKRMAEDLT++L +  +RVRY+HSE+ ++E
Sbjct: 423 VRPSDGQIDDLLSEIRVRAKKNQRVLVTTLTKRMAEDLTDFLSDNKVRVRYLHSEIHSIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           +V    +LYAD  T+S++ AI ET RRR  Q ++N+ + I P+   +KI   I   L   
Sbjct: 543 HVEGVALLYADNFTESMKRAISETDRRRTIQKKYNQINGITPKPAGKKIENSILSFLELS 602

Query: 738 --LEDAATT----NISIDAQQLSLSKKKGKAHL-------KSLRKQMHLAADNLNFEEAA 784
             L+    +    NI  +     L+ K  +  L         L  +M  AA  LNFEEAA
Sbjct: 603 RKLDTGGLSKDLINIVSNKTDDILNAKDNQCLLDEMPSLIDKLENKMKDAAKELNFEEAA 662

Query: 785 RIRDEIKRLK 794
            +RD IK+L+
Sbjct: 663 NLRDRIKKLR 672


>gi|251799690|ref|YP_003014421.1| excinuclease ABC subunit B [Paenibacillus sp. JDR-2]
 gi|247547316|gb|ACT04335.1| excinuclease ABC, B subunit [Paenibacillus sp. JDR-2]
          Length = 667

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/656 (54%), Positives = 466/656 (71%), Gaps = 2/656 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ+++DY P GDQP AI +L++G+++ E  Q LLG TG+GKT+T+A  I  + RP +V+
Sbjct: 11  LFQLKSDYTPQGDQPGAIRKLVEGVNNGEAKQTLLGATGTGKTYTIANTIAELNRPTLVI 70

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQL SEFK FFP NAV YFVSYYDY+QPEAY+P TDTYIEK+SSIN++ID++R
Sbjct: 71  AHNKTLAAQLCSEFKEFFPDNAVSYFVSYYDYFQPEAYIPSTDTYIEKDSSINDEIDKLR 130

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT SL ER D I+V+SVSCIYG+GS   Y  +++ L++G    +  +L  LV  QY+R
Sbjct: 131 HSATSSLFERRDVIIVASVSCIYGLGSPSEYGSLVLSLRVGMEKSRDTILHKLVDIQYQR 190

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI  IRGTFRV GD +EIFP    + A RV +FG++IE I+E   LTG+ +   + + I
Sbjct: 191 NDINFIRGTFRVRGDIVEIFPVANNERAIRVELFGDEIERITEIDVLTGEIVSERDHVAI 250

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT   T+  A+  I+ EL+ RL EL +EG+LLEAQRLEQR  YDLEM+   G C
Sbjct: 251 FPASHFVTHEETMKVALGNIERELEERLAELREEGKLLEAQRLEQRTRYDLEMMAEMGFC 310

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS  LT R  G  P TL +Y P+D L+ +DESHVT+PQI  MY GD  RK  L  
Sbjct: 311 SGIENYSGPLTFRERGATPYTLMDYFPDDMLIVIDESHVTLPQIRAMYNGDRARKEMLVN 370

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEE+       I VSATPG +ELE C   +VEQIIRPTGL+DP +
Sbjct: 371 HGFRLPSALDNRPLRFEEFEGKSKQQIYVSATPGPYELEHCP-TMVEQIIRPTGLLDPII 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + Q++D+  EI     +  R+L+T LTK+MAEDLT+Y  E  I+VRY+HS++KTL
Sbjct: 430 EVRPTKGQIDDLLVEIRDRIAKDERVLVTTLTKKMAEDLTDYFKEIGIKVRYLHSDIKTL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERI I+RDLRLG F VLVGINLLREGLD+PE  LV+ILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 490 ERIAILRDLRLGTFHVLVGINLLREGLDLPEVSLVSILDADKEGFLRSERSLIQTIGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN + +VI+Y D IT S+  A+ ET RRR  Q+ +N++H I PQ++++K+ + I    + 
Sbjct: 550 RNSDGRVIMYGDKITDSMDKALKETERRRAIQIAYNEEHGITPQTIRKKVHDDIKATKVA 609

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +  +  ++    +  +SKK+ +A L+ L  +M  AA NL FE AA +RD +  LK+
Sbjct: 610 EEKSEYLTGVGSE-KMSKKERQALLQRLEAEMKDAAKNLQFERAAELRDALLELKA 664


>gi|319949850|ref|ZP_08023863.1| excinuclease ABC subunit B [Dietzia cinnamea P4]
 gi|319436489|gb|EFV91596.1| excinuclease ABC subunit B [Dietzia cinnamea P4]
          Length = 709

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/673 (51%), Positives = 486/673 (72%), Gaps = 11/673 (1%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           I +  +    F++ +++ PSGDQP AIA+L + +   E+  +LLG TG+GK+ T A +IE
Sbjct: 27  IGDVERSTNRFEVVSEFTPSGDQPTAIAELSERLARGERDVVLLGATGTGKSATTAWLIE 86

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDT+IEK+SS
Sbjct: 87  KVQRPTLVMAPNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPEAYIAQTDTFIEKDSS 146

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN+ ++R+RHSAT SLL R D +VVSSVSCIYG+G+ +SY    V L +G  V++ +LL 
Sbjct: 147 INDDVERLRHSATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVSLAVGQEVDRDQLLR 206

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV  QY+R D+ + RGTFR  GD+++I P++ E++A R+  FG++++ +   +PLTG  
Sbjct: 207 LLVDVQYERNDVSMTRGTFRAKGDTVDIIPTY-EELAVRIEFFGDEVDALYYIHPLTGDV 265

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +R V+ ++I+  +HYV     +  A+  I+EEL++RL ELE +G+LLEAQRL  R +YD+
Sbjct: 266 VRRVDEVRIFPATHYVAGPERMAKAIASIEEELEVRLAELENQGKLLEAQRLRMRTSYDI 325

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM++  G C  IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI  MY GD
Sbjct: 326 EMMQQVGFCSGIENYSRHIDGRPAGSAPATLIDYFPEDFLTVIDESHVTVPQIGAMYEGD 385

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK  L ++GFRLPS +DNRPL +EE++     T+ +SATPG +E+ +  G  VEQ+IR
Sbjct: 386 ASRKRNLVDFGFRLPSALDNRPLTWEEFSDRVGQTVYLSATPGPYEMGRTGGEFVEQVIR 445

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++  + Q++D+  EI   A++  R+L+T LTK+M+EDLT+YL E  +RVR
Sbjct: 446 PTGLVDPKIVVKPTKGQIDDLIGEIRARAERDERVLVTTLTKKMSEDLTDYLLELGVRVR 505

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSE+ TL+R+E++RDLR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS
Sbjct: 506 YLHSEIDTLQRVELLRDLRRGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTS 565

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YADTIT S++ A++ET RRREKQ+ +N +H I+PQ +++KI 
Sbjct: 566 LIQTIGRAARNVSGEVHMYADTITDSMRYAMEETERRREKQIAYNTEHGIDPQPLRKKIA 625

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAH---------LKSLRKQMHLAADNLNFE 781
           +++D +  E + +T+   D  +L  ++  G A          ++ + +QM  AA +L FE
Sbjct: 626 DILDRVGEERSDSTD-GADRPELLGARAVGDAARPRKELEKLIEEMTEQMMSAATDLRFE 684

Query: 782 EAARIRDEIKRLK 794
            A R+RDEI  L+
Sbjct: 685 LAGRLRDEIAELR 697


>gi|257068672|ref|YP_003154927.1| excinuclease ABC subunit B [Brachybacterium faecium DSM 4810]
 gi|256559490|gb|ACU85337.1| Excinuclease ABC subunit B [Brachybacterium faecium DSM 4810]
          Length = 700

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/680 (53%), Positives = 481/680 (70%), Gaps = 28/680 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y PSGDQP AIA L K I+  E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 14  FEVVSEYRPSGDQPTAIADLTKRINDGEQDVVLLGATGTGKSATTAWLIEQVQRPTLVMA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+   PHNAVEYFVSYYDYYQPEAYVP++DTYIEK+SSIN +++R+RH
Sbjct: 74  HNKTLAAQLASEFRELLPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINAEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ + Y   +VQL++GD +++ ELL+  V  QY R 
Sbjct: 134 SATNSLLTRRDVVVVSSVSCIYGLGTPQEYVDRMVQLEVGDELDRDELLTRFVDMQYDRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E++A R+  FG++I+ +   +P+TG+ IR  + I I+
Sbjct: 194 DVAFERGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIDALYTLHPMTGEVIRQEDHIHIF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     L  A+  I+EEL  RL ELE + +LLEAQRL  R T+DLEML   GS  
Sbjct: 253 PASHYVAGPERLARAIGTIEEELAERLEELETQNKLLEAQRLRMRTTHDLEMLRQMGSTN 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L GR PG  P TL +Y PED LL +DESHVT+PQI  MY GD  RK TL ++
Sbjct: 313 GVENYSRHLDGRAPGTAPNTLMDYFPEDFLLVIDESHVTVPQIGAMYEGDRSRKRTLVDF 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+      T+ +SATP  +EL +  G+ VEQIIRPTGLVDP V 
Sbjct: 373 GFRLPSALDNRPLTFSEFTERTGQTVYLSATPAEYELNRAHGV-VEQIIRPTGLVDPEVI 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ +EI    Q+  R+L+T LTKRMAEDLT++L E  +RV+Y+HS+V TL 
Sbjct: 432 VKPVKGQIDDLREEIEKRVQRDERVLVTTLTKRMAEDLTDFLLENGVRVQYLHSDVDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIE++R LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 492 RIELLRSLRQGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSRTSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD +T S+Q AIDET RRREKQ+ +N +H I+P  ++++I +V D +  ED
Sbjct: 552 NVSGQVHMYADRVTDSMQDAIDETNRRREKQIAYNTEHGIDPTPLRKRIADVTDMLARED 611

Query: 741 AATTNI--------------------SIDAQQ---LSLSKKKGKA---HLKSLRKQMHLA 774
             T  +                    S+D+ Q   + L +    A    +  +  QMH A
Sbjct: 612 IDTDTLMATDYRSGKDRVAADRARANSVDSMQGRKVDLGEDPVGALTGMIDEMTAQMHQA 671

Query: 775 ADNLNFEEAARIRDEIKRLK 794
           A++LNFE AAR+RDE++ LK
Sbjct: 672 AESLNFEVAARLRDEVQELK 691


>gi|312870319|ref|ZP_07730447.1| excinuclease ABC, B subunit [Lactobacillus oris PB013-T2-3]
 gi|311094203|gb|EFQ52519.1| excinuclease ABC, B subunit [Lactobacillus oris PB013-T2-3]
          Length = 681

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/661 (50%), Positives = 465/661 (70%), Gaps = 9/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +DY P+GDQP AI QL KGI + +K Q+LLG TG+GKTFT++ VI  + +P ++++
Sbjct: 10  FDLVSDYQPTGDQPEAIDQLTKGIENGDKAQILLGATGTGKTFTISNVIANVNKPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++R+
Sbjct: 70  HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRN 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LLERND IVV+SVS I+G+G+   Y   ++ L +G  +++  LL  LV  QY R 
Sbjct: 130 AATTALLERNDVIVVASVSSIFGLGNPNEYQNSVISLHVGQEIDRDFLLRQLVTIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   + A R+  FG++I+ I E   LTG+   + E + I+
Sbjct: 190 DIDFQRGRFRVHGDVVEIFPASHSETALRIEFFGDEIDRIREVDALTGEVKGDREEVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I++++K ++ +   EG LLEA+RL+QR TYD+EM+   G   
Sbjct: 250 PATHFMTNEDIMDVALPEIEQDMKKQVKKFTDEGNLLEAERLQQRTTYDIEMMREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+  R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRYMDRRKPGEPPYTLLDFFPKDYLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + +SATPG +E EQ    + +QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLNEFEQHVNQVVYMSATPGPYEQEQTDH-VAQQIIRPTGLLDPTIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++++  EIN   ++  R+ +T LTK+M+EDLT+YL +  ++V+Y+HS++KTLE
Sbjct: 429 VRPVMGQIDNLVGEINKRIERHERVFVTTLTKKMSEDLTDYLKDLGLKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD +T+S+Q AIDET RRR  Q+++N+ H+I P ++ + I E I     ++
Sbjct: 549 NEHGAVIMYADEVTESMQKAIDETKRRRSIQMKYNEDHHITPHTIVKPIQEAISAT--KE 606

Query: 741 AATTNISIDAQQLS------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A T    D+ + +      LSK      +  L +QM  AA  L+FE+AA +RD +  LK
Sbjct: 607 TADTGEQADSTEFTTKDFAKLSKDAQANMVDELTEQMRAAAKRLDFEQAATLRDTVMELK 666

Query: 795 S 795
           +
Sbjct: 667 A 667


>gi|258423407|ref|ZP_05686298.1| excinuclease ABC, B subunit [Staphylococcus aureus A9635]
 gi|257846468|gb|EEV70491.1| excinuclease ABC, B subunit [Staphylococcus aureus A9635]
          Length = 663

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 9   FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 69  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 129 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I+
Sbjct: 189 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 249 PASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 309 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +E
Sbjct: 369 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 428 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 488 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   +  D
Sbjct: 548 NDRGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 607

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    AQ +    ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 608 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 661


>gi|325956386|ref|YP_004291798.1| excinuclease ABC subunit B [Lactobacillus acidophilus 30SC]
 gi|325332951|gb|ADZ06859.1| excinuclease ABC subunit B [Lactobacillus acidophilus 30SC]
 gi|327183205|gb|AEA31652.1| excinuclease ABC subunit B [Lactobacillus amylovorus GRL 1118]
          Length = 682

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/659 (51%), Positives = 464/659 (70%), Gaps = 4/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + +P +V+ 
Sbjct: 10  FELVSKFKPAGDQKQAIDELTAGFKKGYKEQILEGATGTGKTFTMANIIAKLNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKGFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L+ERND IVV+SVSCIYG+G  + Y++ ++ +  G   E+  LL  LV  QY R 
Sbjct: 130 ATTSALMERNDVIVVASVSCIYGLGDPKEYARSVLMIHEGQEYERNTLLRDLVNLQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   + A+R+  FG++I+ I E   LTG+ I   E+I ++
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGNSEHAYRIEFFGDEIDRIVEVDSLTGEVIGERESISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I +E+K+++ + E EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNDEQMRRALKAISKEMKVQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P D L+ +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPNDFLILIDESHATMPEIRAMYNGDRNRKKTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERTDH-KVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+QT+GRAAR
Sbjct: 489 RMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N N +VI+YADTIT S++ AI  T RRR+ Q E NK+H I P+++ + I +VI    P  
Sbjct: 549 NANGEVIMYADTITDSMKAAIKATKRRRKIQEEFNKEHGITPKTIIKPIQDVISVTKPAG 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 ++   D     L+ K+ K  +K+L++QM  AA  L+FEEAA +RD I  L+SS
Sbjct: 609 DAKEEKSDSFADLNFDELTAKQKKNMIKNLQEQMKEAAKKLDFEEAANLRDAIMELQSS 667


>gi|315037913|ref|YP_004031481.1| excinuclease ABC subunit B [Lactobacillus amylovorus GRL 1112]
 gi|312276046|gb|ADQ58686.1| excinuclease ABC subunit B [Lactobacillus amylovorus GRL 1112]
          Length = 682

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/659 (51%), Positives = 464/659 (70%), Gaps = 4/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + +P +V+ 
Sbjct: 10  FELVSKFKPAGDQEQAIDELTAGFKKGYKEQILEGATGTGKTFTMANIIAKLNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKGFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L+ERND IVV+SVSCIYG+G  + Y++ ++ +  G   E+  LL  LV  QY R 
Sbjct: 130 ATTSALMERNDVIVVASVSCIYGLGDPKEYARSVLMIHEGQEYERNTLLRDLVNLQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   + A+R+  FG++I+ I E   LTG+ I   E+I ++
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGNSEHAYRIEFFGDEIDRIVEVDSLTGEVIGERESISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I +E+K+++ + E EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNDEQMRRALKAISKEMKVQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P D L+ +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPNDFLILIDESHATMPEIRAMYNGDRNRKKTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERTDH-KVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+QT+GRAAR
Sbjct: 489 RMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N N +VI+YADTIT S++ AI  T RRR+ Q E NK+H I P+++ + I +VI    P  
Sbjct: 549 NANGEVIMYADTITDSMKAAIKATKRRRKIQEEFNKEHGITPKTIIKPIQDVISVTKPAG 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 ++   D     L+ K+ K  +K+L++QM  AA  L+FEEAA +RD I  L+SS
Sbjct: 609 DAKEEKSDSFADLNFDELTAKQKKNMIKNLQEQMKEAAKKLDFEEAANLRDAIMELQSS 667


>gi|54023870|ref|YP_118112.1| excinuclease ABC subunit B [Nocardia farcinica IFM 10152]
 gi|54015378|dbj|BAD56748.1| putative excision nuclease ABC subunit B [Nocardia farcinica IFM
           10152]
          Length = 721

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/688 (52%), Positives = 482/688 (70%), Gaps = 29/688 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +++ P+GDQPAAI +L + I + EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 33  FQVVSEHQPAGDQPAAIDELERRIKAGEKDVVLLGATGTGKSATTAWLIERLQRPTLVMA 92

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 93  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 152

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ +SY    VQL++G  V++  LL  LV  QY R 
Sbjct: 153 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVQLEVGTEVDRDALLRLLVDVQYTRN 212

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG  +R V+T++I+
Sbjct: 213 DLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGDVVRKVDTLRIF 271

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A++ I++EL+ RL ELE++G+LLEAQRL  R  YDLEM+   G C 
Sbjct: 272 PATHYVAGPDRMERAVRDIEQELEERLAELERQGKLLEAQRLRMRTQYDLEMIRQVGFCS 331

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 332 GIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEY 391

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE+       + +SATPG +EL +  G +VEQ+IRPTGLVDP V 
Sbjct: 392 GFRLPSAVDNRPLTWEEFADRIGQVVYLSATPGPYELGRTGGEVVEQVIRPTGLVDPKVV 451

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI L  ++  R+L+T LTK+MAEDLT+YL    +RVRY+HSE+ TL 
Sbjct: 452 VKPTKGQIDDLVHEIRLRTERDERVLVTTLTKKMAEDLTDYLLGLGVRVRYLHSEIDTLR 511

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 512 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTIGRAAR 571

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+Q AI+ET RRR KQ+ +N+K  I+P+ +++KI +++D +  E 
Sbjct: 572 NVSGEVHMYADKITDSMQFAIEETERRRAKQIAYNEKMGIDPKPLRKKIADILDQVYRE- 630

Query: 741 AATTNISIDAQQLSLSKKK----GKA---------HLKS------------LRKQMHLAA 775
           A    +    +  S  ++     G+A          +KS            L  QM  AA
Sbjct: 631 ADEVEVGGSGRNASRGRRAQGEPGRAVSAGVIEGRDVKSMPRAELADLVTELTAQMMNAA 690

Query: 776 DNLNFEEAARIRDEIKRLKSSPYFQGLD 803
             L FE A R+RDEI  LK     +G+D
Sbjct: 691 RELQFELAGRLRDEIADLKKE--LRGMD 716


>gi|218134926|ref|ZP_03463730.1| hypothetical protein BACPEC_02831 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990311|gb|EEC56322.1| hypothetical protein BACPEC_02831 [Bacteroides pectinophilus ATCC
           43243]
          Length = 665

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/651 (52%), Positives = 464/651 (71%), Gaps = 4/651 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L+ G     + Q L+GVTGSGKTFTMA +I+ +Q+P ++++
Sbjct: 7   FRLHSEYQPTGDQPQAIDRLVAGFMEGNQFQTLVGVTGSGKTFTMANIIQKLQKPTLIIS 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID++RH
Sbjct: 67  HNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDKLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+VSSVSCIYG+G+   Y  M+V L+     ++ +++  LV  QY R 
Sbjct: 127 SATAALSERKDVIIVSSVSCIYGLGAPIDYRNMVVSLRPRMEADRDDVIRKLVDMQYVRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGTFRV GD +EI+PS     A RV  FG++++ I+E   LTG+    +E + I+
Sbjct: 187 EMDFKRGTFRVHGDVVEIYPSASSGDAVRVEFFGDEVDRITEVDTLTGEIKSVLEHVAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHY+  +  +  A+  IK EL+ R+   + E +L+EAQR+E+R  +D+EML+ TG C 
Sbjct: 247 PNSHYIVEKEKMEAAIAGIKAELEERIKYFKSEDKLIEAQRIEERTNFDIEMLQETGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PG PP TL +Y P+D L+ +DESH+T+PQI GMY GD  RK TL +Y
Sbjct: 307 GIENYSRHLTGLAPGMPPYTLIDYFPKDFLIIIDESHITVPQIRGMYAGDQSRKTTLVDY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F+E+       + VSATP  +E +  + +  EQIIRPTGL+DP + 
Sbjct: 367 GFRLPSAKDNRPLNFQEFESKIDQMLFVSATPAQYEADH-ELLRAEQIIRPTGLLDPEIS 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   +   ++L+T LTK MAEDLT+YL E  IRVRY+HS++  LE
Sbjct: 426 VRPVEGQIDDLITEINKETKNKHKVLVTTLTKNMAEDLTKYLKEVGIRVRYLHSDIDALE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++TSLIQTIGRAAR
Sbjct: 486 RTKIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRTETSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-PILLE 739
           N    VI+YADTIT S++ AIDET RRR  Q ++N++HNI P+++++ + ++I      E
Sbjct: 546 NSEGHVIMYADTITDSMRQAIDETERRRAIQQKYNEEHNITPKTIQKAVRDLISISRAAE 605

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
              T N+  D +  S+S+++ +   + + K MH AA  LNFEEAA++RD++
Sbjct: 606 PKDTMNLEKDYE--SMSRRELEKVARQIEKNMHRAAAELNFEEAAQLRDQM 654


>gi|315194377|gb|EFU24769.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 661

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/658 (52%), Positives = 472/658 (71%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ  GMY GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQFRGMYNGDRARKQVLVDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   +  D
Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    AQ +    ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659


>gi|253732793|ref|ZP_04866958.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253729158|gb|EES97887.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 661

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKIHSDFEPQGDQPQAIEEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E    TG+ ++  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYRTGEVLKEREHFAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI +  ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTENQIDDLLSEIQIRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   +  D
Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    AQ +    ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659


>gi|225163534|ref|ZP_03725846.1| excinuclease ABC, B subunit [Opitutaceae bacterium TAV2]
 gi|224801873|gb|EEG20157.1| excinuclease ABC, B subunit [Opitutaceae bacterium TAV2]
          Length = 686

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/662 (52%), Positives = 455/662 (68%), Gaps = 9/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++  DY P+GDQP AI  L+  I +  K Q LLGVTGSGKTFTMA VI    RP +++
Sbjct: 2   LFKLHADYQPTGDQPQAIEALVNSIQAGNKHQTLLGVTGSGKTFTMANVIARCDRPTLII 61

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAY+  +DTYIEK+SSINE+I+R+R
Sbjct: 62  SHNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYIAASDTYIEKDSSINEEIERLR 121

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA  SL+ R D IVV+SVSCIYG+GS E +  M +QL+ GD+  +  LL+ LV+  Y+R
Sbjct: 122 ISAASSLVSRRDVIVVASVSCIYGLGSPEDFQAMRIQLRRGDAFGRNVLLTRLVENLYER 181

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D  + RG FRV GD ++I P++LE    RV  +G++IE +SEF PLTG  IR +E   +
Sbjct: 182 NDYDLKRGAFRVRGDVVDIMPAYLEQ-GLRVEFWGDEIEAMSEFDPLTGNVIRALEQFDL 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + YVT +  L+ A+  I+ EL  R+   E+EG+ LEAQR+  R  YDLEML+  G C
Sbjct: 241 YPANQYVTSKDKLDAALSAIRTELDERVAFFEREGKYLEAQRIRMRTNYDLEMLQEMGFC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L GR  G+ P  L ++  +D LL +DESH T+PQI GMY GD  RK  L  
Sbjct: 301 NGIENYSRHLAGRAAGDRPICLVDFFLKDFLLMIDESHATVPQIGGMYNGDQARKQNLVS 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRP  F E+  +   T+ VSATP  +ELE+   ++ EQ+IRPTGL+DP +
Sbjct: 361 FGFRLPSALDNRPQSFAEFVSITGQTLYVSATPAKYELEKST-VVAEQVIRPTGLLDPGI 419

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           +IR+ + QVE++  E   A + G R+L+T LTKR++EDLT +L E  IRV Y+HS++  +
Sbjct: 420 DIRTTKGQVENLIAEARRAVEAGERVLVTTLTKRLSEDLTAFLRESKIRVEYLHSDIDAI 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R+LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT GRAA
Sbjct: 480 ERVEILRNLRQGNFDVLVGINLLREGLDLPEVALVAILDADKEGFLRSETSLIQTAGRAA 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK---EKIMEVIDPI 736
           R+   +VI YAD IT SI+  ++ T  RREKQL +N +H I P+SVK   +  + V D  
Sbjct: 540 RHEKGRVIFYADNITDSIRRTLEVTRVRREKQLAYNAEHGITPRSVKRAQQSSLHVYDGS 599

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            + D    N+S+ A+          A +  L  +M LA+  L FE AA +RD+I  L+S 
Sbjct: 600 GVRDTDDANVSMVAE----GDGDVSAVIAELEDEMTLASSQLEFERAAVLRDQITALRSG 655

Query: 797 PY 798
            Y
Sbjct: 656 DY 657


>gi|320093713|ref|ZP_08025578.1| excision endonuclease subunit UvrB [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319979334|gb|EFW10824.1| excision endonuclease subunit UvrB [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 690

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/670 (51%), Positives = 474/670 (70%), Gaps = 18/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y PSGDQP AI +L   I   E+  +L+G TG+GK+ T A +IE +QRPA+V+ 
Sbjct: 13  FEVVSEYSPSGDQPKAIKELASRIRDGEQDVVLMGATGTGKSATTAWLIEELQRPALVLE 72

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH
Sbjct: 73  PNKTLAAQLAAEFRELLPGNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 132

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ E Y   +++L+ G  +++  LL   V  QY R 
Sbjct: 133 SATNSLLTRRDTVVVSSVSCIYGLGTPEEYVARMIELERGMRIDRDALLRRFVAMQYVRN 192

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+IEI P + E++A R+ MFG++I+ ++  +PLTG  I  V+   ++
Sbjct: 193 DMAFTRGTFRVRGDTIEIIPVY-EELAIRIEMFGDEIDSLAVLHPLTGDVIDEVDRTYLF 251

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I+EE++ R+   E +G+LLEAQRL  R T+DLEML   GSC 
Sbjct: 252 PASHYVAGEERMKRAIGTIEEEMEERVAWFEGQGKLLEAQRLRMRTTFDLEMLREIGSCA 311

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR PG PP TL +Y P+D LL +DESHVT+PQI  M+ GD  RK TL ++
Sbjct: 312 GVENYSRHIDGRGPGTPPHTLLDYFPDDFLLIIDESHVTVPQIGAMFEGDMSRKRTLVDH 371

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+++E+      T+ +SATPG +EL++  G +VEQIIRPTGLVDP V 
Sbjct: 372 GFRLPSAMDNRPLKWDEFTARIGQTVYLSATPGPYELDRSDG-VVEQIIRPTGLVDPLVT 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ +++    ++  R+L+T LTK+MAE+LT YL ER +RV Y+HS+V TL 
Sbjct: 431 VKPTEGQIDDLLEQVRARVEKDERVLVTTLTKKMAEELTTYLAERGVRVEYLHSDVDTLR 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 491 RVELLRELRKGAFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736
           NV+ +V +YADT+T S++ A+ ET RRR+ Q+ +N++H I+P+ ++++I +V D +    
Sbjct: 551 NVSGEVHMYADTVTDSMREALSETMRRRDLQIAYNREHGIDPKPLRKRIADVTDMLAREQ 610

Query: 737 -----LLED-------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
                LLE        AA    +        ++    + ++ L +QM  AA +L FE AA
Sbjct: 611 IDTESLLEGGYRREKTAAERTAAGARGAAGRAQGDLASLIEELSEQMMTAAAHLQFELAA 670

Query: 785 RIRDEIKRLK 794
           R+RDEI+ LK
Sbjct: 671 RLRDEIEDLK 680


>gi|225850330|ref|YP_002730564.1| excinuclease ABC subunit B [Persephonella marina EX-H1]
 gi|225646490|gb|ACO04676.1| excinuclease ABC subunit B [Persephonella marina EX-H1]
          Length = 662

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/657 (52%), Positives = 464/657 (70%), Gaps = 3/657 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F++   + P+GDQP AI QL + +    K Q+LLG TG+GKTFT+  VIE   +P +V
Sbjct: 4   TPFKIDMPFPPAGDQPKAINQLYENLKQGVKEQVLLGATGTGKTFTIGNVIEKYGKPTLV 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +  NK LAAQLY E K  FP NAVEYFVSYYDYYQPEAYVP  D YIEK+SSIN+ IDR+
Sbjct: 64  LTHNKTLAAQLYRELKELFPDNAVEYFVSYYDYYQPEAYVPEKDLYIEKDSSINDAIDRL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSAT+SL+ER D IVV+SVSCIYG+G+ E Y ++ + L +G  +E+++LL  LV+ QY 
Sbjct: 124 RHSATKSLIERPDTIVVASVSCIYGLGTPEFYEKLRLHLFVGQQIERQDLLKRLVELQYV 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD++EI PSH ED+  RV  FG++IE I+E         R + T  
Sbjct: 184 RDDFSFKRGTFRVKGDTVEILPSHSEDIILRVEFFGDEIESITELDIFNRDIKRKLNTTV 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++  SHYV PRP +  A+K IK +L+  + E  K+G+ +EA RL QR  YD+EM+   G+
Sbjct: 244 VFPASHYVIPRPDMIEAIKQIKADLEREVEEFRKQGKEIEANRLWQRTNYDIEMMLELGT 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSRY  GR PGEPP TL +Y P+D LL VDESHVTIPQ+  MY GD  RK  L 
Sbjct: 304 CKGIENYSRYFDGRKPGEPPYTLMDYFPDDFLLIVDESHVTIPQVRAMYNGDRRRKDNLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YG+RL S  DNRPL+FEE+       I VSATP  WE+E+ +G+IVEQIIRPTGL+DP 
Sbjct: 364 KYGWRLKSAYDNRPLKFEEFVEKIQRAIYVSATPAEWEIERSKGVIVEQIIRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V ++    Q++D+  EI    ++  R ++  LTK+MAE+L +YL ER+I+  Y+HSE+ T
Sbjct: 424 VVVKPTEGQIDDLISEIWNIKERNERAIVITLTKKMAENLADYLEERDIKAIYLHSEIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER++II++LR GK+DV+VG+NLLREG+D+PE  LVA+LDADK+GFLRS T+LIQ IGRA
Sbjct: 484 IERVKIIKELREGKYDVIVGVNLLREGIDMPEVSLVAVLDADKQGFLRSATALIQIIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN K ILYADTIT +++ AI+ET RRR+ Q E+N+++ I P++V +   EV D I L
Sbjct: 544 ARNVNGKAILYADTITPAMEKAINETERRRKLQKEYNERYGIEPKTVSK---EVKDLISL 600

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           E+     +  +  +   S++     ++SL KQM   A+   FE+AA IRD+I++L+S
Sbjct: 601 EEIGIYEMYENLPEDIESEEDLLKQIESLEKQMWEYAEKWEFEKAAEIRDKIEKLRS 657


>gi|167628796|ref|YP_001679295.1| excinuclease abc, b subunit [Heliobacterium modesticaldum Ice1]
 gi|167591536|gb|ABZ83284.1| excinuclease abc, b subunit [Heliobacterium modesticaldum Ice1]
          Length = 830

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/595 (56%), Positives = 440/595 (73%), Gaps = 1/595 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ+++++ P GDQP AIA+L++GI    + Q LLG TG+GKTFTMA VIE +QRP +V+
Sbjct: 5   LFQLKSEFVPKGDQPQAIARLVEGIEKGMRYQTLLGATGTGKTFTMASVIEKVQRPTLVL 64

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQL +EFK FFP NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++R
Sbjct: 65  AHNKTLAAQLCAEFKEFFPDNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLR 124

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT +L+ER D I+V+SVSCIYG+GS E Y   ++ L+ G   ++  +L  LV  QY R
Sbjct: 125 HAATAALIERRDVIIVASVSCIYGLGSPEEYLDQMISLRKGQIYDRDAVLRRLVDIQYSR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +I   RGTFRV GD +E+FP+   D A R+  FG+++E ISE   LTG+       I I
Sbjct: 185 NNINFTRGTFRVRGDVVEVFPASYSDRAVRLEFFGDELERISEIDTLTGEVYGERYHISI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           + N+HYVT    L  ++  I+ EL+ RL   +++G+L+EAQRL QR  YD+EML   G C
Sbjct: 245 FPNTHYVTNWDKLELSIANIEAELEERLAWFKEQGKLVEAQRLAQRTRYDIEMLREMGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LT R PGEPP TL  + P+D LL VDESHVTIPQ+  MY+GD  RK TL E
Sbjct: 305 TGIENYSRHLTFRPPGEPPYTLMHFFPKDFLLMVDESHVTIPQVGAMYQGDRSRKMTLIE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS  DNRPL+F E+  +    + VSATP  +EL++ +  +VEQIIRPTGL+DP +
Sbjct: 365 HGFRLPSAADNRPLKFHEFEQMLNQVVFVSATPADYELQRSEQ-VVEQIIRPTGLIDPVI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R  + Q++D+  EI    ++  R+L+T LTK+MAEDLT YL    +RVR+MHS+V  +
Sbjct: 424 DVRPVKGQIDDLLGEIRERIKKDQRVLVTTLTKKMAEDLTAYLRNVGVRVRWMHSDVDAI 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++IIRDLRLG+FDVLVGINLLREGLD+PE GLVAILDADKEGFLRS  SLIQTIGRAA
Sbjct: 484 ERMQIIRDLRLGEFDVLVGINLLREGLDLPEVGLVAILDADKEGFLRSDRSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           RNV   VI+Y D +T+S+Q AIDET RRR  Q+ +N++  I PQ+VK+ +  VI+
Sbjct: 544 RNVEGTVIMYGDRLTRSMQKAIDETNRRRAIQIAYNEQQGITPQTVKKAVRNVIE 598


>gi|289551380|ref|YP_003472284.1| Excinuclease ABC subunit B [Staphylococcus lugdunensis HKU09-01]
 gi|315658887|ref|ZP_07911754.1| excision endonuclease subunit UvrB [Staphylococcus lugdunensis
           M23590]
 gi|289180911|gb|ADC88156.1| Excinuclease ABC subunit B [Staphylococcus lugdunensis HKU09-01]
 gi|315496011|gb|EFU84339.1| excision endonuclease subunit UvrB [Staphylococcus lugdunensis
           M23590]
          Length = 661

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/660 (53%), Positives = 473/660 (71%), Gaps = 12/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++++ P GDQP AI +++KGI+  ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKLKSEFEPQGDQPQAIQKIVKGINEGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +E+ ELL  LV  QY R 
Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMERTELLRKLVDVQYSRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ +R  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVLREREHFAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTRDEKMQLAIQRIEKELEERLKELRAENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQI GMY GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLVDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP ++
Sbjct: 367 GFRLPSALDNRPLMFEEFEDKTKQLVYVSATPGPYELEHTDE-MVEQIIRPTGLLDPKID 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTENQIDDLLGEIQERVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AIDET RRRE Q  HN+K+ I PQ++ ++I +VI       
Sbjct: 546 NDRGEVIMYADKMTDSMKYAIDETQRRREIQTAHNEKYGITPQTIHKRIHDVI------S 599

Query: 741 AATTNISIDAQQLS-----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A   N   +AQ+ +     ++KK+ +  ++++ K+M  AA  L+FE+A  +RD +  LKS
Sbjct: 600 ATVENDETNAQEQTTVPKKMTKKERQKTIENIEKEMKKAAKELDFEKATELRDMLFELKS 659


>gi|182415429|ref|YP_001820495.1| excinuclease ABC, B subunit [Opitutus terrae PB90-1]
 gi|177842643|gb|ACB76895.1| excinuclease ABC, B subunit [Opitutus terrae PB90-1]
          Length = 677

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/662 (52%), Positives = 459/662 (69%), Gaps = 14/662 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++  DY P+GDQP AI QL+  IH+  + Q LLGVTGSGKTFTMA VI   +RP +++
Sbjct: 2   LFKLHADYQPTGDQPQAIEQLVASIHAGNRHQTLLGVTGSGKTFTMANVIARCERPTLII 61

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAY+  +DTYIEK+SSINE+I+R+R
Sbjct: 62  SHNKTLAAQLYSEFKNFFPENAVEYFVSYYDYYQPEAYIASSDTYIEKDSSINEEIERLR 121

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +AT SL+ R D +VV+SVSCIYG+GS E ++++ + L+ G+ + +   L  LV   Y R
Sbjct: 122 IAATSSLVSRRDVVVVASVSCIYGLGSPEEFTELRIPLRRGEQLGRHRFLERLVDNIYDR 181

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D  + RGTFRV GD +++ P++LE    RV  FG+++E I+EF P++G+ +RN+E   +
Sbjct: 182 NDYELKRGTFRVRGDVVDVMPAYLEH-GLRVEFFGDEVEAITEFDPVSGKVLRNLEQFDL 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + YVT R  L+ A++ IK EL  R+   E++G+ LEAQR+  R  YDLEML+  G C
Sbjct: 241 YPANQYVTSRGRLDPAIRSIKAELDERVAYFEQKGQYLEAQRVRMRTNYDLEMLQEMGFC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LTGR  GE P  L ++ P+D LL +DESH T+PQI GM+ GD  RK TL +
Sbjct: 301 NGIENYSRHLTGRKAGERPFCLIDFFPKDFLLMIDESHATVPQIGGMFNGDRARKQTLVD 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRP  FEE+  +    + VSATP  +EL++   ++ EQ++RPTGL+DP +
Sbjct: 361 FGFRLPSALDNRPQTFEEFEQITHQALYVSATPAEFELKRST-VVAEQLVRPTGLLDPEI 419

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            IR  + QVE++  EI  AA  G R+L+T LTKR++EDLT YL E  IRV Y+HS++  +
Sbjct: 420 VIRPTKGQVENLIGEIKAAAAAGERVLVTTLTKRLSEDLTSYLREAKIRVEYLHSDIDAI 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R+LRLG FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+TSL+QT GRAA
Sbjct: 480 ERVEILRNLRLGNFDVLIGINLLREGLDLPEVALVAILDADKEGFLRSETSLVQTAGRAA 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK---EKIMEVIDPI 736
           R+   +VI YAD IT+SI+  ++    RREKQL +N +H I P+SVK   +  + V D  
Sbjct: 540 RHEKGRVIFYADNITESIRRTVEIVKYRREKQLAYNVEHGITPRSVKRAAQASLHVYDGS 599

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              D A     +D            A +  L  +M  AA  L FE AA +RD+I  LKS 
Sbjct: 600 GERDEAAVAEEVD---------DVAAVIAELEDEMQEAAGRLEFERAAVLRDQINALKSG 650

Query: 797 PY 798
            Y
Sbjct: 651 EY 652


>gi|226950837|ref|YP_002805928.1| excinuclease ABC, B subunit [Clostridium botulinum A2 str. Kyoto]
 gi|254764903|sp|C1FMK5|UVRB_CLOBJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226842613|gb|ACO85279.1| excinuclease ABC, B subunit [Clostridium botulinum A2 str. Kyoto]
          Length = 662

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/656 (52%), Positives = 464/656 (70%), Gaps = 6/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + ++P+GDQP AI  + KGI  REK Q L+GVTGSGKTFTMA +IE +Q+P +V+A
Sbjct: 4   FKVISKFNPTGDQPKAIKSIAKGIEKREKFQTLIGVTGSGKTFTMANIIEKVQKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP+NAVEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFREFFPNNAVEYFVSYYDYYQPEAYVAQSDTYIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  LV+ QY+R 
Sbjct: 124 SATSALFERKDVIIVASVSCIYGLGNPEEYKKLTISLREGMEKDRDEIIKKLVEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD ++IFP+     A RV  FG++I+ I EF  LTG+ I  ++ I I+
Sbjct: 184 DIDFSRGTFRVKGDVLDIFPASSSSKAVRVEFFGDEIDRIKEFDVLTGETITKLKHISIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T +  L  A+K I+EEL+ R+ EL  + ++LEAQRL+QR  +D+EM+   G C 
Sbjct: 244 PASHFATSKDRLEVAIKDIEEELEERVKELVSQDKILEAQRLKQRTNFDIEMMREVGYCT 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L GR  G PP TL +Y P+D LLF+DESHVT+PQ+  M  GD  RK +L EY
Sbjct: 304 GIENYSRVLDGRAKGTPPQTLLDYFPQDFLLFIDESHVTLPQVKAMQAGDKSRKDSLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL F+E+       + VSATP  +ELE       EQ+IRPTGL+DP + 
Sbjct: 364 GFRLPCAYDNRPLTFKEFENKLNQVVFVSATPAKYELEYSTN-TAEQVIRPTGLLDPEII 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+Y  I    ++G RIL+T LTK+MAEDLT+YL E  ++ RY+HS++ T+E
Sbjct: 423 VKPVKGQIDDLYTSIQETIKRGFRILVTTLTKKMAEDLTDYLKEMGVKTRYLHSDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II DLR G+F VLVGINLLREGLDIPE  LV ILDADKEGFLRS+TSLIQT+GRAAR
Sbjct: 483 RMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  SKVI+Y D ITKS++  I ET RRR+ Q+E+N+++ I P+++ + I EVI    + D
Sbjct: 543 NSESKVIMYGDVITKSMEKTIKETNRRRKIQMEYNEEYGIVPKTIIKDIREVIQ---ISD 599

Query: 741 AATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A      D    +L          ++   ++M  AA NL FE+AA +RD I +LK
Sbjct: 600 IAEERKEYDNLNEALKSYNNDIDKLIEKYEEEMKEAAQNLQFEKAAHLRDVIYKLK 655


>gi|228474442|ref|ZP_04059177.1| excinuclease ABC subunit B [Staphylococcus hominis SK119]
 gi|314936942|ref|ZP_07844289.1| excinuclease ABC subunit B [Staphylococcus hominis subsp. hominis
           C80]
 gi|228271801|gb|EEK13148.1| excinuclease ABC subunit B [Staphylococcus hominis SK119]
 gi|313655561|gb|EFS19306.1| excinuclease ABC subunit B [Staphylococcus hominis subsp. hominis
           C80]
          Length = 661

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/655 (52%), Positives = 471/655 (71%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P GDQP AI ++++G+ + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKLNSEFEPQGDQPQAIKKIVEGVKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYSRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++++ I E   LTG+ IR  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEVDRIREVNYLTGEVIREREHFAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL+ E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKMKVAIERIEKELEERLKELKAENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMFNGDQARKKVLVDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP ++
Sbjct: 367 GFRLPSAMDNRPLKFEEFEQKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKID 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI     +  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTKNQIDDLLSEIQERIDRNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +D +VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDAVVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S+Q AIDET RRRE Q+ HN+K+ I P+++ +KI +VI   +  D
Sbjct: 546 NDKGEVIMYADKITDSMQYAIDETQRRREIQMTHNEKYGITPKTINKKIHDVISATVDND 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                   +  +  ++KK+ +  ++++ K+M  AA +L+FE A  +RD +  LK+
Sbjct: 606 ETNEKQQTEVPK-KMTKKERQKTIENIEKEMKKAAKDLDFERATELRDMLFELKA 659


>gi|254445611|ref|ZP_05059087.1| excinuclease ABC, B subunit [Verrucomicrobiae bacterium DG1235]
 gi|198259919|gb|EDY84227.1| excinuclease ABC, B subunit [Verrucomicrobiae bacterium DG1235]
          Length = 668

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/659 (52%), Positives = 464/659 (70%), Gaps = 8/659 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI  LL  I +  K Q LLGVTGSGKTF++A VI  + RPA+
Sbjct: 1   MGLFKLSSEYKPTGDQPVAINSLLDSIRAGNKFQTLLGVTGSGKTFSIANVIAELDRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++IDR
Sbjct: 61  VISHNKTLAAQLYSEFKRFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R S T SL+ R D IVV+SVSCIYG+GS E + ++++ LK+G+   +  LL  LV+  Y
Sbjct: 121 LRISTTSSLISRRDVIVVASVSCIYGLGSPEDFQELMIPLKVGEEFGRDRLLGDLVEILY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+ + RG FRV GD +++ P++LE    R+  +G++IE +SEF PLTG  I+ ++  
Sbjct: 181 ERNDVSLERGRFRVRGDVVDVMPAYLEK-GLRIEFWGDEIERLSEFDPLTGNVIQELQQF 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  + +VT +  + +A+  IK ELK R+ E E +G+LLEAQR+  R  YDLEM++  G
Sbjct: 240 DLYPANQFVTTKEKMESAVGLIKSELKERVAEFESKGQLLEAQRISMRTNYDLEMMQEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYS +L+GR  GE P  L ++  +D LL VDESHVTIPQI  MY GD  RK TL
Sbjct: 300 FCNGIENYSMHLSGRKAGERPFCLIDFFHKDMLLIVDESHVTIPQIGAMYAGDRSRKTTL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS ++NRP+ F+E+  +   T+ V+ATP  +E E+ + +I EQ+IRPTGL+DP
Sbjct: 360 VEHGFRLPSALENRPMNFQEFMEVTGQTVYVTATPAKFEREKSE-VIAEQVIRPTGLLDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V IR  + QVED+  EI  A  +G R+L+T LTKR++ED+T YL E++I V Y+HS++ 
Sbjct: 419 VVTIRPMKGQVEDLITEIRKAIDKGERVLVTTLTKRLSEDITAYLREKDISVEYLHSDID 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            LER+EI+R LR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSL QT GR
Sbjct: 479 ALERVEILRRLRAGRFDVLVGINLLREGLDLPEVALVAILDADKEGFLRSETSLTQTAGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+ N +VI YAD IT SI+  ++ T  RR KQ+E+N +H I P+SV     E +  +L
Sbjct: 539 AARHENGRVIFYADVITDSIRRTVETTEYRRSKQIEYNAEHGITPKSVNRGDQESLRQLL 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            E+ A++ I +            +A +  L  +M  AA  L FE+AA +RD+I  LKS 
Sbjct: 599 EEEDASSAIIVGEDD------DVQAVIDELTVEMDEAAAKLEFEKAALLRDQIDSLKSG 651


>gi|323438709|gb|EGA96450.1| excinuclease ABC subunit B [Staphylococcus aureus O11]
          Length = 661

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/658 (52%), Positives = 472/658 (71%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L E +D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 127 SATSALFESDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   +  D
Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    AQ +    ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659


>gi|223042856|ref|ZP_03612904.1| excinuclease ABC, B subunit [Staphylococcus capitis SK14]
 gi|314933067|ref|ZP_07840433.1| excinuclease ABC subunit B [Staphylococcus caprae C87]
 gi|222443710|gb|EEE49807.1| excinuclease ABC, B subunit [Staphylococcus capitis SK14]
 gi|313654386|gb|EFS18142.1| excinuclease ABC subunit B [Staphylococcus caprae C87]
          Length = 661

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/659 (53%), Positives = 468/659 (71%), Gaps = 10/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P GDQP AI +++ G+++ ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKLNSEFEPQGDQPQAIQKIVDGVNNGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ IR  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVIREREHFAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQI GMY GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRPLGSTPFTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLVDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP ++
Sbjct: 367 GFRLPSALDNRPLKFEEFEDKTKQLVYVSATPGPYELEHTDE-MVEQIIRPTGLLDPKID 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTENQIDDLLSEIQERIDRDERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +D +VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSDRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S+Q AIDET RRR+ Q  HNK+H I P+++ +KI +VI   +  D
Sbjct: 546 NDKGEVIMYADKITDSMQYAIDETQRRRDIQTAHNKEHGITPKTINKKIHDVISATVESD 605

Query: 741 AATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                   D +Q  L KK  K      ++++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 606 ETN-----DQKQTELPKKMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKA 659


>gi|78357139|ref|YP_388588.1| excinuclease ABC subunit B [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|90110885|sp|Q30ZK3|UVRB_DESDG RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|78219544|gb|ABB38893.1| Excinuclease ABC subunit B [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 682

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/673 (52%), Positives = 466/673 (69%), Gaps = 18/673 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F+++++Y P GDQP AI QL   I +    Q+LLGVTGSGKTFTMA  IE  QRPA++
Sbjct: 4   SVFRIESEYVPRGDQPEAITQLSDNIRAGVAHQVLLGVTGSGKTFTMAHTIERCQRPALI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+EF+  FPHNAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ ID++
Sbjct: 64  LAPNKTLAAQLYNEFRALFPHNAVEYFVSYYDYYQPEAYVPTSDTYIEKDSSINDNIDKL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R D I+++SVSCIYG+GS E Y++M++ ++ G  +    L+  LV  QY+
Sbjct: 124 RHAATHALLTRRDVIIIASVSCIYGLGSPEYYAKMVIPVEAGQHMSMDSLIGRLVDVQYE 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD +E+ P++  + A R+  FG++I+ I E  PLTG  + +V    
Sbjct: 184 RNDYDFHRGTFRVRGDVLEVIPAYHHERALRLEFFGDEIDSIKEIDPLTGNVLGDVGKTV 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYV+ R  LN A+  I+EEL++RL E  +  RL+EAQRLEQR   DLEM+E  G 
Sbjct: 244 IYPASHYVSDRDNLNRAVSDIREELRLRLEEYRQGNRLVEAQRLEQRTMLDLEMIEEMGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L GR  GEPP  L +Y P++ +LFVDESH+T+ Q+  MY+GD  RK TL 
Sbjct: 304 CTGIENYSRHLDGRTAGEPPACLLDYFPDNFILFVDESHITVSQVGAMYKGDRSRKQTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS +DNRPL F E+       + VSATP  WEL++ +GI+VEQIIRPTGL+DP 
Sbjct: 364 DFGFRLPSALDNRPLEFSEFEKRLNQVVYVSATPSRWELDRSEGIVVEQIIRPTGLLDPL 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
            E+R  + Q+ED+  E      +  R+L+T LTKRMAEDLTEYL    +  RY+HS++ T
Sbjct: 424 TEVRPTKGQMEDLMTECRSRTARDERVLVTTLTKRMAEDLTEYLTSMGVSARYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+ II+ LR  +FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT GRA
Sbjct: 484 MERMAIIQALRRKEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTGSLIQTFGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV+ +VI+YAD++T+S+  A+ ET RRREKQ  +N++H I P SV++ +    D  L 
Sbjct: 544 ARNVDGRVIMYADSVTRSMTAAMQETERRREKQRLYNEEHGIEPVSVRKSLETPFD-TLY 602

Query: 739 EDAATT-----------------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
            DA +                    + D     +S ++    ++ L ++M  +A +L FE
Sbjct: 603 SDARSAAAKGRGKGRGRQAAPAQTAAEDTTAYGISAEELGGLIQRLEREMRESARDLEFE 662

Query: 782 EAARIRDEIKRLK 794
           +AA +RD I+ L+
Sbjct: 663 KAAELRDRIRMLR 675


>gi|254526928|ref|ZP_05138980.1| excinuclease ABC, B subunit [Prochlorococcus marinus str. MIT 9202]
 gi|221538352|gb|EEE40805.1| excinuclease ABC, B subunit [Prochlorococcus marinus str. MIT 9202]
          Length = 679

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/670 (51%), Positives = 464/670 (69%), Gaps = 17/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++Q  Y P+GDQP AI +L+KG+++ ++ Q LLG TG+GKTFT+A VI+   RPA+V+A
Sbjct: 4   YKLQAPYEPNGDQPEAIKKLVKGVNTGKEFQTLLGATGTGKTFTIANVIQQTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G S+  +  L SLV+ QY R 
Sbjct: 124 SATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFEVGKSINLRSSLRSLVENQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI I RG FR+ GD +EI P++ ED   R+  FG+++E I    P TG+ + ++E + +Y
Sbjct: 184 DIEITRGRFRIKGDVLEIGPAY-EDRLIRIEFFGDEVEAIRYIDPTTGEILESLEQVSVY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L +A+  I+ ELK +L +   EG+LLEAQRLEQR  YDLEML+  G C 
Sbjct: 243 PAKHFVTPKERLESAISAIRSELKTQLEKFTYEGKLLEAQRLEQRTKYDLEMLKEVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L+GR  G PP  L +Y P+D LL VDESHVT PQ+  MY GD  RK  L ++
Sbjct: 303 GVENYARHLSGREEGSPPECLIDYFPKDWLLVVDESHVTCPQLHAMYNGDQSRKKVLIDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+      T+ +SATPG WEL+QC G  +EQ+IRPTG++DP ++
Sbjct: 363 GFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWELDQCDGEFIEQVIRPTGVLDPVID 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  Q+ED+  EI + A++  R+L+T LTKRMAEDLT++L E  +RVRY+HSE+ ++E
Sbjct: 423 VRPSEGQIEDLLSEIRIRAKKNQRVLVTTLTKRMAEDLTDFLSENKVRVRYLHSEIHSIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII+DLR+G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V    +LYAD  T S++ AI ET RRR  Q ++N+ + I P+   +KI   I   L   
Sbjct: 543 HVEGVALLYADNFTDSMKRAISETERRRTIQKKYNQVNGITPKPAGKKIENSILSFLELS 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS----------------LRKQMHLAADNLNFEEAA 784
                  +    +++   K  + L S                L  +M  AA  LNFEEAA
Sbjct: 603 RKLDADGLSKDLINIVHNKTDSILNSSDNQCLLEELPDLIEKLEIKMKDAAKELNFEEAA 662

Query: 785 RIRDEIKRLK 794
            +RD IK+L+
Sbjct: 663 ILRDRIKKLR 672


>gi|172040811|ref|YP_001800525.1| excinuclease ABC subunit B [Corynebacterium urealyticum DSM 7109]
 gi|171852115|emb|CAQ05091.1| excinuclease ABC, subunit B [Corynebacterium urealyticum DSM 7109]
          Length = 710

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/672 (51%), Positives = 474/672 (70%), Gaps = 20/672 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQPAAIA+L + ++  E+  +L+G TG+GK+ T A +IE  QRP +VMA
Sbjct: 28  FEVISEYEPAGDQPAAIAELDERLNRGERDVVLMGATGTGKSATAAWLIEQQQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E ++  P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 88  PNKTLAAQLANELRSLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VVSSVSCIYG+G+ +SY    V L++ + V++ + L  LV  QY R 
Sbjct: 148 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLRVDEEVDRDQFLRLLVDIQYDRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD+++I P++ E++A RV  FG+D++ +   +PLTG  IR V+ ++I+
Sbjct: 208 DVSFTRGAFRVKGDTVDIIPAY-EELAVRVEFFGDDVDALYYIHPLTGDVIREVDELRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  AM+ I+EEL  RL +LE  G+LLEAQRL  R  YDLEM++  G   
Sbjct: 267 PATHYVAGPERMEKAMQAIREELAERLEDLENRGKLLEAQRLRMRTEYDLEMIQQVGFTS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM+ GD  RK  L E+
Sbjct: 327 GIENYSRHIDGRPAGSAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEH 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE++  +   + +SATPG +E+   QG  VEQ+IRPTGLVDP VE
Sbjct: 387 GFRLPSALDNRPLTWEEFDDRKGQCVYMSATPGDYEIAAAQGEFVEQVIRPTGLVDPKVE 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ +EI     +  R+L+T LTKRMAEDLT+YL E  +RVRYMHS++ TL+
Sbjct: 447 VRPTEGQIDDLIEEIRKRTDKDERVLVTTLTKRMAEDLTDYLLEHGVRVRYMHSDIDTLK 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736
           NV+ +VI+YAD +T+S+  AIDET RRR KQ+ +N++H I+PQ +++KI +++D +    
Sbjct: 567 NVSGEVIMYADNVTESMSNAIDETERRRAKQIAYNEEHGIDPQPLRKKIADILDQVEEFS 626

Query: 737 --------LLEDAATTNISIDAQQLSLSKKKGKAH-------LKSLRKQMHLAADNLNFE 781
                    +  +A+T +  D      ++ +G          ++ L  QM  +A  L FE
Sbjct: 627 EGYGEPGSEVAGSASTGVEGDMATFGRAEDRGDMARPQLEKLIEGLTAQMKESARELKFE 686

Query: 782 EAARIRDEIKRL 793
            A R+RDEI  L
Sbjct: 687 LAGRLRDEIADL 698


>gi|301167406|emb|CBW26988.1| UvrABC system protein B [Bacteriovorax marinus SJ]
          Length = 669

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/664 (53%), Positives = 463/664 (69%), Gaps = 14/664 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F +Q++++P GDQP AI  L     + EK Q LLGVTGSGKTFTMA VI+ + +  ++
Sbjct: 6   SVFNIQSEFNPCGDQPEAIKNLTNKFSAGEKEQTLLGVTGSGKTFTMAHVIQNLGKKTLI 65

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQLY+EF+ FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N++ID++
Sbjct: 66  LAHNKTLAAQLYAEFREFFPNNAVEYFVSYYDYYQPEAYVPGTDTFIEKDASVNDEIDKL 125

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSAT++LLER+D IVV+SVSCIYGIGS + Y    + L + D +++ ELL  LV  Q++
Sbjct: 126 RHSATKNLLERDDVIVVASVSCIYGIGSPDEYESQKINLFVDDEMDRDELLKDLVSIQFQ 185

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RG FRV GD +E+FP+  E    R+  F + IE IS   PL G+ ++N+  I 
Sbjct: 186 RNDIDFSRGCFRVRGDLVEVFPASEESDVIRIEFFDDTIESISIVDPLRGKVLQNLNKIT 245

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYV     L  A+  IK EL+ RL EL  + +L+E QRLEQR   DLEM+E  G 
Sbjct: 246 IYPKSHYVVSEKKLENAISTIKLELRERLQELGAQEKLVERQRLEQRTLLDLEMMEEMGF 305

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+LTG   G+PPPTL ++   + L+ +DESH+T+ Q+ GMYRGD  RK  L 
Sbjct: 306 CSGIENYSRHLTGSKEGDPPPTLIDFFKNNFLMIIDESHITVSQVGGMYRGDRARKQNLV 365

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS +DNRPL F E+       + VSATPG +EL +  G   EQ+IRPTGL+DP 
Sbjct: 366 DFGFRLPSALDNRPLNFPEFESKLDQVLYVSATPGDYELTKTSGEYTEQVIRPTGLLDPT 425

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR A +QV+D+  E+    ++  R+L+T LTK++AE+LT Y     I+V+Y+HS++ T
Sbjct: 426 IEIRDASSQVDDLLVEVRKIIKKSQRVLITTLTKKLAEELTHYYKGAGIKVKYLHSDIDT 485

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 486 LERMEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 545

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM-EVIDPIL 737
           ARN   K ILYA   TKS++ AI ET RRR  Q E+N+++ I P ++ +K+   VI+   
Sbjct: 546 ARNAEGKAILYAYKNTKSMEKAIFETKRRRAIQEEYNQENGITPVTISKKVSGGVIET-- 603

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQ-------MHLAADNLNFEEAARIRDEI 790
           L  A    ++   +    SK  G+   KSL KQ       M +A+  L+FE AA++RDEI
Sbjct: 604 LRGAKGNKVAKGPK----SKLSGELDAKSLDKQIEELTSKMKMASRELDFEFAAKLRDEI 659

Query: 791 KRLK 794
           K LK
Sbjct: 660 KSLK 663


>gi|70727132|ref|YP_254046.1| excinuclease ABC subunit B [Staphylococcus haemolyticus JCSC1435]
 gi|90111053|sp|Q4L4I5|UVRB_STAHJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|68447856|dbj|BAE05440.1| exinuclease ABC subunit B [Staphylococcus haemolyticus JCSC1435]
          Length = 661

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/659 (53%), Positives = 472/659 (71%), Gaps = 10/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P GDQP AI +++KG+   ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKLNSEFDPQGDQPQAIEKIVKGVKEGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYSRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ IR  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVIREREHFAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL+ E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKMKIAIERIEKELEERLKELKDENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMFNGDRARKQVLVDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+FEE+       + VSATPG +E+E    +I EQIIRPTGL+DP ++
Sbjct: 367 GFRLPSAMDNRPLKFEEFEQKTNQLVYVSATPGPYEIEHTDEMI-EQIIRPTGLLDPKID 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI     +  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTKNQIDDLLSEIQERIDRDERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDVVVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S+Q A+DET RRR+ Q  HN+K+ I P+++ +KI +VI   +  D
Sbjct: 546 NEKGEVIMYADKITDSMQYALDETQRRRDIQTAHNEKYGITPKTINKKIHDVISATV--D 603

Query: 741 AATTNISIDAQQLSLSKKKGKAH----LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              TN   + QQ  L KK  K      ++++ K+M  AA +L+FE+A  +RD +  LKS
Sbjct: 604 NDETN---EKQQTELPKKMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKS 659


>gi|297564591|ref|YP_003683563.1| excinuclease ABC subunit B [Meiothermus silvanus DSM 9946]
 gi|296849040|gb|ADH62055.1| excinuclease ABC, B subunit [Meiothermus silvanus DSM 9946]
          Length = 668

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/647 (53%), Positives = 466/647 (72%), Gaps = 9/647 (1%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P GDQP AIAQL + I   E+   LLG TG+GKT TMA+ I  + RPA+VMAPNK+LAAQ
Sbjct: 9   PKGDQPKAIAQLTEAIQDGERFVTLLGATGTGKTVTMAQTIAKLGRPALVMAPNKVLAAQ 68

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L SEF+  FP NAVEYF+SYYDYYQPEAYVP  D +IEK++SIN +I+R+RHS TRSLL 
Sbjct: 69  LASEFRELFPENAVEYFISYYDYYQPEAYVPGRDLFIEKDASINPEIERLRHSTTRSLLT 128

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           R D IVV+SVS IYG+GS E Y  M + +++G  + ++ +L  LV  QY+R D+ +  GT
Sbjct: 129 RRDVIVVASVSAIYGLGSPEDYKNMSLVVEVGQDLPREAILERLVDLQYERGDLQLEPGT 188

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           FR  G+ +E++P++ E    R+ M+G+ +E IS  +P+TG++++++    +   +HY TP
Sbjct: 189 FRAKGEVLEVWPAY-ETEPIRIEMWGHTLERISVTHPVTGERLKDLPGFVLLGATHYATP 247

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
              L  A+  IK +L++RL ELE++G+LLEAQRL++R  YDLEMLE  G+C  IENYSRY
Sbjct: 248 EARLKEAIPQIKADLEVRLSELEEQGKLLEAQRLKERTLYDLEMLEVMGTCPGIENYSRY 307

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
           L+G+ PGEPP TL +Y PED L F+DESHVT+PQ+ GMY GD+ RK TL +YGFRLPS +
Sbjct: 308 LSGKAPGEPPYTLLDYFPEDYLTFLDESHVTVPQLRGMYNGDYMRKKTLVDYGFRLPSAL 367

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           DNRPLRF E+       I VSATPG +E ++  G I+EQIIRPTGL+DP V I+SA+ Q+
Sbjct: 368 DNRPLRFNEFLERVGQVIFVSATPGPYE-QEVSGRIIEQIIRPTGLLDPKVTIKSAQGQI 426

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           ED+   I   + +  R+L+TVLT RMAE+LT YL E  IR RY+H E+   ER  ++RDL
Sbjct: 427 EDLMGAIRTRSAKKERVLVTVLTVRMAEELTNYLVEHGIRARYLHHELDAFERQALLRDL 486

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           RLG FD LVGINLLREGLD+PE  LVAILDADK GFLRS+ SLIQTIGRAARN   +V L
Sbjct: 487 RLGHFDCLVGINLLREGLDLPEVSLVAILDADKTGFLRSERSLIQTIGRAARNAEGEVYL 546

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           YA+T+++++++A++ET RRR  Q  +N++H I PQ+V++ + +VI P   E+ AT     
Sbjct: 547 YAETVSEAMRIAVEETNRRRAIQEAYNQEHGITPQTVQKSVRKVIKPDDYEEEAT----- 601

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             Q L    +  +  L +L ++M  A++ L+FE AA IRD+++ L++
Sbjct: 602 --QALLERPEDLREALLNLEEEMWRASEALDFERAALIRDQMRSLEA 646


>gi|206890241|ref|YP_002248529.1| excinuclease ABC, B subunit [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|254764917|sp|B5YJW4|UVRB_THEYD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|206742179|gb|ACI21236.1| excinuclease ABC, B subunit [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 671

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/659 (54%), Positives = 475/659 (72%), Gaps = 8/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ T + P GDQP AI QL++GI    K Q+LLGVTGSGKTFT+A VIE + +P +V+A
Sbjct: 4   FKIYTSFKPKGDQPKAIKQLVEGIKKGYKHQVLLGVTGSGKTFTIANVIEKVNKPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K  FP+NAVEY+VSYYDYYQPEAY+P TDTYIEK++ IN+ IDRMRH
Sbjct: 64  HNKTLAAQLYGELKELFPYNAVEYYVSYYDYYQPEAYIPETDTYIEKDALINDDIDRMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT S+L R D IVV+SVSCIYGIGS + Y  M V L+ G   E+  +L  LV+  Y R 
Sbjct: 124 SATLSVLTRQDVIVVASVSCIYGIGSPDDYMSMHVTLEEGMKTERDAMLKKLVEILYIRA 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RG FRV GD ++IF SH  D A+RV  F ++I+ I E  PLTG + + ++ I I 
Sbjct: 184 EEEFRRGAFRVRGDVVDIFASHCLDKAYRVEFFDDEIDAIYEIDPLTGSRQKRLQRIFIP 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSH+VTP P L  A++ I+EEL+ R+   ++ G  L A+R+E+R  +D+E+L   G C 
Sbjct: 244 PNSHWVTPEPRLKKALETIEEELQERIKYFKERGEELFAERIEKRTRFDMELLSQFGHCH 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYI-----PEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            IENYSR+L+GR PGEPP TL +YI       D L  +DESHVT+PQI GMY GD  RK 
Sbjct: 304 GIENYSRHLSGRLPGEPPFTLIDYIYAGPSKGDFLTVIDESHVTVPQIGGMYEGDRSRKQ 363

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL EYGFRLPS +DNRPL F+E+       I VSATPG +E+E+  G IVEQIIRPTGLV
Sbjct: 364 TLVEYGFRLPSALDNRPLTFKEFEHRMNYVIYVSATPGDYEIEKSGGRIVEQIIRPTGLV 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +E+R A  QVED+ +EI+    +G R+L+T +TK+MAEDLT+Y     I+ +Y+HS+
Sbjct: 424 DPKIEVRPATNQVEDLLEEIHKRVSRGERVLVTTITKKMAEDLTDYYTTVGIKAKYLHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + TLER+EI++DLRLGKFDVL+G+NLLREGLD+PE  LVAI DADKEGFLRS+ SLIQT 
Sbjct: 484 IDTLERVEILKDLRLGKFDVLIGVNLLREGLDLPEVSLVAIFDADKEGFLRSERSLIQTA 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRA+RN+N  VI YADT+T S++ AI+ET RRRE Q+++NKK+ I+P++VK KI +++  
Sbjct: 544 GRASRNINGTVIFYADTVTDSMKKAIEETERRREIQMKYNKKNGISPETVKSKIKDILSS 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           I  +D  T ++    ++ +   +  +  +K L ++M  AA+NL FE+AA IRD+I ++K
Sbjct: 604 IYEKDYVTVDV---VKEEAEEYELNEETIKKLEQEMKHAAENLEFEKAAEIRDKIFKIK 659


>gi|294786797|ref|ZP_06752051.1| excinuclease ABC subunit B [Parascardovia denticolens F0305]
 gi|315226426|ref|ZP_07868214.1| excision endonuclease subunit UvrB [Parascardovia denticolens DSM
           10105]
 gi|294485630|gb|EFG33264.1| excinuclease ABC subunit B [Parascardovia denticolens F0305]
 gi|315120558|gb|EFT83690.1| excision endonuclease subunit UvrB [Parascardovia denticolens DSM
           10105]
          Length = 704

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/685 (52%), Positives = 474/685 (69%), Gaps = 35/685 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AI +L + +++ E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 15  FVVKSPYQPSGDQPQAIEELAERLNNGESDVVLMGATGTGKTATTAWLIEKLQRPTLILE 74

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAYVP+TDT+IEK+SSIN+ ++R+RH
Sbjct: 75  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYVPQTDTFIEKDSSINDDVERLRH 134

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R D +VVS+VSCIYG+G+ E Y+  ++ L  GD + + ELL + VK QYKR 
Sbjct: 135 AATANLLTRRDTVVVSTVSCIYGLGTPEEYASQMLFLHEGDELNRDELLRTFVKMQYKRN 194

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG+ I +V  I I+
Sbjct: 195 DLAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGEIIDHVTNIHIF 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     LN AMK IKEEL  R+ E +K+G+LLEAQRL+ R TYDLEML   G+C 
Sbjct: 254 PATHYVAGPDRLNRAMKTIKEELDERVAEFKKQGKLLEAQRLQMRTTYDLEMLAQIGTCS 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR PG PP TL ++ P+D LL +DESH T+PQI  MY GD  RK TL EY
Sbjct: 314 GVENYSRHFDGRAPGTPPHTLLDFFPDDFLLVIDESHQTVPQIGAMYEGDASRKRTLVEY 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL +EE+      T+ +SATPG +EL    G+ VEQIIRPTGL+DP VE
Sbjct: 374 GFRLPSAMDNRPLTWEEFQQHIGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLLDPQVE 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  R+L+T LTK+MAEDLT+YL +R+I+V Y+HS+V TL 
Sbjct: 433 VRPVDGQIDDLLGEIKDRVSRNERVLVTTLTKKMAEDLTDYLLDRDIKVEYLHSDVDTLR 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 493 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV   VI+YAD  T+++  AIDET RRRE Q+ +NK+H I+PQ + +KI +V D +  ED
Sbjct: 553 NVQGTVIMYADKETEAMAKAIDETNRRREVQMAYNKEHGIDPQPLIKKISDVNDMLAKED 612

Query: 741 AATTNISIDAQQLSLSKKKGKAHL-------------------------------KSLRK 769
             T  +         S K G +HL                               + L +
Sbjct: 613 IDTETLL--ETGYRNSGKAGNSHLGVPDLDRKTMDGNRQRLMEAGLPAQDLADLIRQLSE 670

Query: 770 QMHLAADNLNFEEAARIRDEIKRLK 794
           QMH AA+ L FE AAR+RDE++ LK
Sbjct: 671 QMHTAAEQLQFELAARLRDEVQDLK 695


>gi|282916100|ref|ZP_06323863.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           D139]
 gi|283769921|ref|ZP_06342813.1| UvrABC system protein B [Staphylococcus aureus subsp. aureus H19]
 gi|282320048|gb|EFB50395.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           D139]
 gi|283460068|gb|EFC07158.1| UvrABC system protein B [Staphylococcus aureus subsp. aureus H19]
          Length = 663

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/658 (52%), Positives = 473/658 (71%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 9   FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 69  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 129 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I+
Sbjct: 189 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 249 PASHFVTREEKLKVAIELIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 309 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVDH 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +E
Sbjct: 369 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 428 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 488 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   +  D
Sbjct: 548 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 607

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    AQ +    ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 608 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 661


>gi|154508848|ref|ZP_02044490.1| hypothetical protein ACTODO_01358 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798482|gb|EDN80902.1| hypothetical protein ACTODO_01358 [Actinomyces odontolyticus ATCC
           17982]
          Length = 689

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/674 (51%), Positives = 471/674 (69%), Gaps = 22/674 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI +L   I   E+  +L+G TG+GK+ T A +IE +QRPA+V+ 
Sbjct: 8   FEVISPYTPSGDQPKAIRELAARIRDGEQDVVLMGATGTGKSATTAWLIEELQRPALVLE 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++++R+RH
Sbjct: 68  PNKTLAAQLAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEVERLRH 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ E Y   +++L+ G  +++  LL   V  QY R 
Sbjct: 128 SATNSLLTRRDTVVVSSVSCIYGLGTPEEYVARMIELERGMIIDRDSLLRRFVAMQYVRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+IEI P + E++A R+ MFG++IE ++  +PLTG  I +V+   ++
Sbjct: 188 DLAFTRGTFRVRGDTIEIIPVY-EELAIRIEMFGDEIESLAVLHPLTGDVIDHVDHTYLF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I++EL  RL     + +LLE QRL  R T+DLEML+  GSC 
Sbjct: 247 PASHYVASEERMKKAIASIEDELDDRLAWFRGQNKLLEEQRLRMRTTFDLEMLKEIGSCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR PG PP TL +Y P+D LL +DESHVT+PQI  M+ GD  RK TL +Y
Sbjct: 307 GVENYSRHIDGRGPGTPPHTLLDYFPDDFLLIIDESHVTVPQIGAMFEGDMSRKRTLVDY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+++E+      T+ +SATPG +ELE+  G+ VEQIIRPTGLVDP V 
Sbjct: 367 GFRLPSAMDNRPLKWDEFTERIGQTVYLSATPGPYELERSDGV-VEQIIRPTGLVDPLVV 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ +++ +  ++  R+L+T LTK+MAE+LT YL ER ++V Y+HS+V TL 
Sbjct: 426 VKPTEGQIDDLLEQVRVRVERDERVLVTTLTKKMAEELTTYLAERGVKVEYLHSDVDTLR 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LRLG FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RVELLRELRLGTFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD +T S+  AI ET RRRE Q+ +NK+H I+PQ +++KI +V D +  E 
Sbjct: 546 NVSGEVHMYADNMTDSMNEAISETMRRREIQIAYNKEHGIDPQPLRKKISDVTDMLAREQ 605

Query: 741 AATTNISIDAQQLSLSKKK-------GKAHLKSLR-------------KQMHLAADNLNF 780
             T  +     +   SK++       G+A     R              QM  AA +L F
Sbjct: 606 VDTQTLLEGGYRKEKSKRERSDATGGGRAVTSGQRAEAELAELIEELSAQMMTAAQHLQF 665

Query: 781 EEAARIRDEIKRLK 794
           E AAR+RDEI+ LK
Sbjct: 666 EVAARMRDEIEDLK 679


>gi|160878417|ref|YP_001557385.1| excinuclease ABC subunit B [Clostridium phytofermentans ISDg]
 gi|160427083|gb|ABX40646.1| excinuclease ABC, B subunit [Clostridium phytofermentans ISDg]
          Length = 662

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/654 (53%), Positives = 463/654 (70%), Gaps = 2/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP A+  L+KG     + + LLGVTGSGKTFTMA VI+ + RP +++A
Sbjct: 4   FKLVSEFAPTGDQPEALEALVKGFEEGNQFETLLGVTGSGKTFTMANVIQRLNRPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH
Sbjct: 64  HNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y  M + L+ G   ++ ++L  LV+ QY R 
Sbjct: 124 SATAALTERRDVIIVASVSCIYGLGSPVDYQNMTLSLRPGMIRDRDDVLRRLVEIQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EIFP    D+A+RV  FG+++E I+E   LTG+    +E + I+
Sbjct: 184 DMDFKRGTFRVRGDVVEIFPITGTDLAYRVEFFGDEVERITEIDVLTGEIKCTLEHMVIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  +  L  A+  I+EEL+ R+   + E +LLEAQR+ +R  +D+EML  TG C 
Sbjct: 244 PASHYVVSKDNLERAIVNIEEELEDRIRYFKSEDKLLEAQRISERTHFDIEMLRETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS +L G  P   P TL +Y P+D L+ VDESH+TIPQ+ GMY GD  RK TL ++
Sbjct: 304 GVENYSMHLAGLTPESTPHTLIDYFPDDFLIMVDESHITIPQVRGMYAGDQSRKTTLVDF 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS   NRPL F E+       + VSATP  +E +  + +  EQIIRPTGL+DP VE
Sbjct: 364 GFRLPSAKSNRPLNFTEFESKINQMLFVSATPNVYEKDH-ELLRAEQIIRPTGLLDPVVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N    +  ++++T LTKRMAEDLT+Y+ E  IR++Y+HS++ TLE
Sbjct: 423 VRPVHGQIDDLVSEVNKETAKKNKVMITTLTKRMAEDLTDYMRELGIRIKYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+R+  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RSEIIRDMRMDVFDVLVGINLLREGLDIPEISLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S+  A+ ET RRR+ Q E+N+KH I PQ++K+K+ E+I       
Sbjct: 543 NAEGRVIMYADRITDSMDKALRETERRRKIQDEYNEKHGITPQTIKKKVRELISISKKVS 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               +++I   + S+S+K+ +A  K L K+MH AA  LNFE AA +RD++  LK
Sbjct: 603 KEMYDMNIKDYE-SMSRKELEAVAKKLTKEMHTAAAELNFELAAELRDKLLELK 655


>gi|58337009|ref|YP_193594.1| excinuclease ABC subunit B [Lactobacillus acidophilus NCFM]
 gi|227903571|ref|ZP_04021376.1| excinuclease ABC subunit B [Lactobacillus acidophilus ATCC 4796]
 gi|81311493|sp|Q5FL61|UVRB_LACAC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|58254326|gb|AAV42563.1| excinuclease ABC (subunit B) [Lactobacillus acidophilus NCFM]
 gi|227868458|gb|EEJ75879.1| excinuclease ABC subunit B [Lactobacillus acidophilus ATCC 4796]
          Length = 683

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/659 (51%), Positives = 466/659 (70%), Gaps = 4/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + +P +V+ 
Sbjct: 10  FELVSKFKPAGDQQQAINKLTAGFEKGYKEQILEGATGTGKTFTMANIIAKLNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKGFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L+ERND IVV+SVSCIYG+G  + Y++ ++ +  G   E+  LL  LV  QY R 
Sbjct: 130 ATTSALMERNDVIVVASVSCIYGLGDPKEYARSVLMIHEGQEYERNTLLRDLVNLQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   + A+RV  FG++I+ I E   LTG+ I   E+I ++
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGNSNHAYRVEFFGDEIDRIVEIDSLTGEVIGERESISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L  A+K I +E+K+++ + E EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNDEQLRRALKAISKEMKVQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRHMEGRKVGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDRNRKKTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLAEFEKHVNQILYVSATPGDYELERTDH-KVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+QT+GRAAR
Sbjct: 489 RMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N N +VI+YADTIT S++ AI+ T RRR+ Q E NK+H I P+++ + + +VI    P  
Sbjct: 549 NANGEVIMYADTITDSMKAAIEATQRRRKLQEEFNKEHGIVPKTIIKPVHDVISITKPSE 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 T+   D     L+ K+ K  +K+L++QM  AA  L+FEEAA +RD I  L+SS
Sbjct: 609 DSKKEKTDSFADLNFDELTAKQKKTMIKNLQEQMKEAAKKLDFEEAANLRDAIMELQSS 667


>gi|317968351|ref|ZP_07969741.1| excinuclease ABC subunit B [Synechococcus sp. CB0205]
          Length = 669

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/660 (53%), Positives = 455/660 (68%), Gaps = 8/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P GDQP AI  L+ G+ S E+ Q LLG TG+GKTFT+A VI    RPA+V+A
Sbjct: 5   FEIHAPYEPKGDQPEAIKALVAGVESGERYQTLLGATGTGKTFTIANVIAKTGRPALVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 65  HNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G+++  +  L  LV  QY R 
Sbjct: 125 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGETLNLRSSLRDLVNNQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ I RG FRV GD +EI P++ ED   R+ +FG+++E I    P TG+ ++++E+I IY
Sbjct: 185 DLEISRGRFRVRGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSLESISIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L  A+K I+ EL+ RL  L ++G+LLEAQRLEQR TYDLEMLE  G C 
Sbjct: 244 PAKHFVTPKERLEDAIKAIRSELRERLDVLNEQGKLLEAQRLEQRTTYDLEMLEQVGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L GR  G PP  L +Y PED LL VDESHVT  Q+  MY GD  RK  L E+
Sbjct: 304 GVENYARHLAGREAGTPPECLIDYFPEDWLLVVDESHVTCSQLQAMYNGDQARKGVLIEH 363

Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           GFRLPS  DNRPL+ +E W   R  +I VSATPG WEL+Q    +V+Q+IRPTG++DP V
Sbjct: 364 GFRLPSAADNRPLKGDEFWEKAR-QSIFVSATPGDWELKQSDSEVVQQVIRPTGVLDPIV 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    QV+D+  EI   A++  R+L+T LTKRMAEDLT+YL E  +RVRY+HSE+ ++
Sbjct: 423 EVRPTDGQVDDLLGEIRTRAEKKERVLVTTLTKRMAEDLTDYLAENGVRVRYLHSEIHSI 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEII+DLR G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAA
Sbjct: 483 ERIEIIQDLRNGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-- 737
           R+V    +LYAD +T S+  AI ET RRR  Q  +N+KH I P    ++    I   L  
Sbjct: 543 RHVEGVALLYADNLTDSMAKAISETERRRAIQQAYNEKHGITPTPAGKRGGNSILAFLEV 602

Query: 738 ---LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              L D      +  A+   +        ++ L  +M  AA NL+FEEAA +RD IK L+
Sbjct: 603 SRRLNDEQLEQATEQAEHNDVPLDALPELIQQLEDKMKSAAKNLDFEEAANLRDRIKSLR 662


>gi|167463462|ref|ZP_02328551.1| excinuclease ABC subunit B [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 667

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/654 (54%), Positives = 464/654 (70%), Gaps = 2/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AIA+L++G+   +  Q LLG TG+GKTFT A+VI  + RP +V+A
Sbjct: 13  FELVSEYSPQGDQPKAIAELVEGVKQGKAHQTLLGATGTGKTFTAAQVIAQLNRPTLVIA 72

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP+NAV YFVSYYDYYQPEAY+P +DTYIEK+SSIN++ID++RH
Sbjct: 73  HNKTLAAQLASEFKEFFPNNAVSYFVSYYDYYQPEAYIPSSDTYIEKDSSINDEIDKLRH 132

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D IVV+SVSCIYG+GS + Y  +++ L++G    + ++L  LV  QY+R 
Sbjct: 133 SATSSLFERRDIIVVASVSCIYGLGSPKEYGSLLLSLRVGMEKSRNDILRRLVDIQYQRN 192

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  +RGTFRV GD IEIFP+   + A RV +FG++IE I+E   LTG+ +   E I I+
Sbjct: 193 DMNFVRGTFRVRGDVIEIFPASRSEQAVRVELFGDEIERITEIDVLTGEILGEREHIAIF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT       A+K I+ EL+ RL EL  +G+LLEAQRLEQR  YD+EM+   G C 
Sbjct: 253 PASHFVTHEDKTKLAVKNIERELEGRLEELRGQGKLLEAQRLEQRTRYDMEMMLEMGFCS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  LT R  G  P TL +Y P+D L+ +DESHVT+PQI  MY GD  RK  L E+
Sbjct: 313 GIENYSGPLTFRERGSTPYTLLDYFPDDMLVMIDESHVTLPQIRAMYNGDQARKTVLVEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       I +SATPG +ELE C   +VEQIIRPTGL+DP +E
Sbjct: 373 GFRLPSALDNRPLKLEEFEQKVKQAIYISATPGPYELEHCPE-MVEQIIRPTGLLDPIIE 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  E+     +  R+L+T LTK+MAEDLT+YL E  I+VRY+HS++KTLE
Sbjct: 432 VRPTKGQIDDLLAEVQDRIAKDERVLVTTLTKKMAEDLTDYLKEVGIKVRYLHSDIKTLE 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLG F VLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 492 RMQILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+Y D IT S+  AI ET RRR  Q  +NK+H I P +V +KI +VI+   + +
Sbjct: 552 NSEGRVIMYGDKITDSMDKAIRETERRRAIQEAYNKEHGITPTTVAKKIRDVIEATKVAE 611

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             T  ++ + +   +SK+     ++ L  +M  AA NL FE AA +RD +  LK
Sbjct: 612 QKTEYLA-EVKTAKMSKRDRMKLIERLEAEMKEAAKNLQFERAAELRDAVLELK 664


>gi|260887847|ref|ZP_05899110.1| excinuclease ABC subunit B [Selenomonas sputigena ATCC 35185]
 gi|330838715|ref|YP_004413295.1| excinuclease ABC, B subunit [Selenomonas sputigena ATCC 35185]
 gi|260862353|gb|EEX76853.1| excinuclease ABC subunit B [Selenomonas sputigena ATCC 35185]
 gi|329746479|gb|AEB99835.1| excinuclease ABC, B subunit [Selenomonas sputigena ATCC 35185]
          Length = 682

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/657 (53%), Positives = 466/657 (70%), Gaps = 2/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P GDQP AI  L  GI + ++ Q+LLG TG+GKT+T+AK IE +Q+P +V+A
Sbjct: 18  FEVSAPFEPMGDQPRAIQDLAAGIENGQEAQVLLGATGTGKTYTIAKTIERVQKPTLVIA 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP N V YFVSYYDYYQPEAY+P TDTYIEK++SIN++ID +RH
Sbjct: 78  HNKTLAAQLASEFKAFFPKNYVGYFVSYYDYYQPEAYIPSTDTYIEKDASINDEIDELRH 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER DCI+V+SVSCIYG+GS ESY +M++ L  G +V ++++L  LV  QY+R 
Sbjct: 138 SATCSLFERRDCIIVASVSCIYGLGSPESYHEMVLSLHKGQTVVREDILRKLVAIQYERN 197

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD IE+FP+   + A R+ +FG+++E I EF  LTG+         ++
Sbjct: 198 DIAFERGRFRVRGDVIEVFPAGWNNRAVRIELFGDEVERILEFDVLTGEIYGERTHSMVF 257

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +  +  AM  I EE   ++   ++EG+L+EAQR+EQR  YDLEM++  G C 
Sbjct: 258 PASHYVTKKEDMEIAMAAIDEEKIAQVAHFKEEGKLIEAQRIEQRTNYDLEMMQEMGYCS 317

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHVT+PQ+  M  GD  RK +L E 
Sbjct: 318 GIENYSRHLTHRPAGAAPYTLLDYFPDDFLIVMDESHVTMPQLKAMLNGDRSRKISLVEN 377

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I +SATP  +ELE+ Q  +VEQIIRPTGL+DP VE
Sbjct: 378 GFRLPSAFDNRPLSFEEFEQRINQIIYISATPAKYELEKAQQ-VVEQIIRPTGLLDPIVE 436

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+ + A++  R+L+T LTK+MAE+LT+YL +  +RVRY+HS++ T E
Sbjct: 437 VRPLAGQMDDLLSEVRIRAKKDERVLVTTLTKKMAENLTDYLKDMQVRVRYLHSDIATFE 496

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EII DLR GKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 497 RAEIIHDLRAGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTSLIQTIGRAAR 556

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-E 739
           N   +VILYAD IT S++ A+DET RRR  Q  +NK+H + P+++ + ++ +I+  L+ E
Sbjct: 557 NAGGRVILYADRITDSMKRAMDETERRRTVQQAYNKEHGVTPKTIVKPVVPLIETTLVAE 616

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             A+     D ++  L+KK+ ++ +++L  QM  A+  L FE AA +RD I  L+ S
Sbjct: 617 SRASYGEDFDGKKKKLTKKQKESLIRTLLAQMQTASRALEFERAAELRDMIIELEGS 673


>gi|153812682|ref|ZP_01965350.1| hypothetical protein RUMOBE_03089 [Ruminococcus obeum ATCC 29174]
 gi|149831198|gb|EDM86287.1| hypothetical protein RUMOBE_03089 [Ruminococcus obeum ATCC 29174]
          Length = 662

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/656 (52%), Positives = 460/656 (70%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L+KG     + + LLGVTGSGKTFTMA VI  + +P +V+A
Sbjct: 4   FELHSEYKPTGDQPQAIEKLVKGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDTYI K++S N++ID++R 
Sbjct: 64  HNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIAKDASTNDEIDKLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IVVSSVSCIYG+G+ E +  M++ L+ G   ++ E++  L+  QY R 
Sbjct: 124 SATAALCERKDVIVVSSVSCIYGLGAPEEFFDMMISLRPGMEKDRDEVIKELIDIQYNRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGTFRV GD +EIFP++  D A RV  FG++I+ I+E   LTG+    ++   I+
Sbjct: 184 EMDFHRGTFRVRGDVLEIFPANYSDRAIRVEFFGDEIDRITEVDVLTGEIHNELKHAAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +  A   I EE+K ++   + E +L+EAQR+ +R  +D+EM++ TG C 
Sbjct: 244 PASHYVVPQSQIQKAADAILEEMKEQVSYFKSEDKLIEAQRIAERTNFDVEMMKETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PG+PP TL +Y  +D LL +DESH T+ Q+ GMY GD  RK TL +Y
Sbjct: 304 GIENYSRHLTGLAPGQPPYTLMDYFKDDFLLIIDESHKTVSQVGGMYAGDQSRKQTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F E+       + VSATPG +E E  + +  EQIIRPTGL+DP VE
Sbjct: 364 GFRLPSAKDNRPLSFTEFENKLDQVMFVSATPGQYEAEH-ELLRAEQIIRPTGLLDPKVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N    +G +IL+T LTKRMAEDLT+Y+ +  IRVRY+HS++ TLE
Sbjct: 423 VRPVEGQIDDLISEVNKEVDKGHKILITTLTKRMAEDLTDYMKDVGIRVRYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RAEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSEVSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S++ AI ET RRR  Q  +NK+H I P ++K+ + ++I   + + 
Sbjct: 543 NSEGHVIMYADVMTDSMRKAIQETERRRTIQEAYNKEHGITPTTIKKAVRDLI--TVSKA 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A T   +  +  S+++K+    +  + KQM  AA +LNFE+AA +RD++  LK S
Sbjct: 601 VAETEDKLKKEPESMTRKELTKLIGQVEKQMRAAAADLNFEQAAELRDKMIELKKS 656


>gi|160914503|ref|ZP_02076718.1| hypothetical protein EUBDOL_00509 [Eubacterium dolichum DSM 3991]
 gi|158433661|gb|EDP11950.1| hypothetical protein EUBDOL_00509 [Eubacterium dolichum DSM 3991]
          Length = 658

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/657 (52%), Positives = 459/657 (69%), Gaps = 3/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + ++Y P GDQP AI  L++G+   +K Q+LLG TG+GKTFT++ VI  + +P ++ 
Sbjct: 5   LFDLVSEYKPQGDQPKAIKALVEGVKEGKKQQVLLGATGTGKTFTISNVIAQVNKPTLIF 64

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
             NK LA QLYSEFK FFPHN VEYFVS +DYYQPEAY+P +DTYI+K ++ N ++D +R
Sbjct: 65  VHNKTLAGQLYSEFKEFFPHNRVEYFVSNFDYYQPEAYIPSSDTYIDKNATTNMELDMLR 124

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +A  S+LER D I+V+SV+CIYG  + E Y  M   +++GD +++KEL+S LV +QY R
Sbjct: 125 MAAVNSVLERRDTIIVASVACIYGASNPEQYRDMFFSIRVGDVIDRKELMSKLVARQYTR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ + RG FRV GD IE+ P H +    R+ MF ++IE I E  PLTG+ +       +
Sbjct: 185 NDMELGRGCFRVRGDVIEVAPGHSDAYILRIEMFDDEIERICEVDPLTGKVLNAYTVYVV 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  S Y T +  +N A   I EEL+ RL  LE+EG+LLE QRLEQR  YD+E L   G C
Sbjct: 245 YPASGYATKQEIINRAADTIGEELEERLAVLEQEGKLLEKQRLEQRTRYDMEALREFGVC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR++ GR PGE P TLF+Y P+D LL VDESHV++PQI GMY GD  RK TL  
Sbjct: 305 PGIENYSRHIDGRKPGERPYTLFDYFPDDFLLVVDESHVSLPQIRGMYNGDRARKETLVN 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP+RFEE+  +    I VSATPG +ELE+  G IVEQIIRPTGL+DP V
Sbjct: 365 YGFRLPSALDNRPMRFEEFEDMIHQAIFVSATPGDYELEKTHGEIVEQIIRPTGLLDPLV 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R  + Q++D+ DEI    ++  R+L+T LT RMAEDLT YL   + +V ++H EVKT+
Sbjct: 425 SVRPTQGQIDDLTDEIRKRIEKNERVLITTLTVRMAEDLTSYLKGMDFKVAWLHHEVKTI 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIRDLR GK+DVL+GINLLREGLDIPE  L+AILDADKEGFLRS+ SLIQ IGRAA
Sbjct: 485 ERTEIIRDLRKGKYDVLIGINLLREGLDIPEVSLIAILDADKEGFLRSERSLIQIIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN + +VI+Y D IT S+  A++ET+RRR  Q  +NK+H+I PQ++ + I EV+     +
Sbjct: 545 RNAHGEVIMYGDHITDSMHKALEETSRRRAIQTAYNKEHHITPQTIIKPIHEVVRSKETQ 604

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +     I    ++ +++KK     + +L+K+M  AA  L+FE AA++RD +  L+S+
Sbjct: 605 EMTAKYIH---KKAAVNKKDKDKLIANLQKEMKEAAKVLDFERAAQLRDILFELQST 658


>gi|229829634|ref|ZP_04455703.1| hypothetical protein GCWU000342_01731 [Shuttleworthia satelles DSM
           14600]
 gi|229791623|gb|EEP27737.1| hypothetical protein GCWU000342_01731 [Shuttleworthia satelles DSM
           14600]
          Length = 664

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/654 (51%), Positives = 463/654 (70%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AI  L+KG    ++   L GVTGSGKTFTMA VI+ + +P ++++
Sbjct: 4   FVLHSKYKPTGDQPQAIDALVKGFREGDQFATLKGVTGSGKTFTMANVIQKLNKPTLIIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP++DTYI K+S+IN++ID++R 
Sbjct: 64  HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQSDTYIAKDSAINDEIDKLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D ++V+SVSCIYGIGS E Y  M+V  + G  +++ + + SL+  QY R 
Sbjct: 124 SATAALAERRDVVIVASVSCIYGIGSPEDYENMMVSFRPGMEIDRDDAIKSLIDMQYTRS 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD ++IFP+   D A+R+  FG++I+ I E   LT +    +E + I+
Sbjct: 184 DLDFSRGTFRVRGDVLDIFPAVASDYAYRLEFFGDEIDRILEIDVLTQEARHEMEHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  ++ A K I+EEL  R+   ++  +LLEAQR+ +R  +D+EML  TG C 
Sbjct: 244 PASHYVVPQEKIDAACKTIQEELDSRIRYFKQNDKLLEAQRIAERTNFDIEMLRETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++TG+ PG+ P  L +Y  +D L+ +DESH+T+PQI GMY GD  RK +L +Y
Sbjct: 304 GIENYSRHMTGQKPGQAPYCLIDYFGDDFLMIIDESHITLPQIRGMYNGDQARKRSLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATPG +E E  + +  EQ+IRPTGL+DP + 
Sbjct: 364 GFRLPSALDNRPLNFAEFENKIDQMLFVSATPGDYEAEH-ELMRTEQVIRPTGLLDPEIF 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++G ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ TLE
Sbjct: 423 VRPVEGQIDDLIGEIRGETKKGHKVLITTLTKRMAEDLTDYMLELGIRVKYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RAQIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADTIT S++LAI+ET RRR  Q  +N++H I PQ++++KI EVI   +  +
Sbjct: 543 NSEGHVIMYADTITDSMRLAIEETNRRRAMQQAYNEEHKITPQTIRKKIQEVI--AISRE 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A  + +   +   +S ++ +  +  +RK+M  AA +LNFE AA +RD++  L+
Sbjct: 601 LAKEDAAFCKEPEDMSAEELEERILDIRKKMESAAADLNFERAADLRDQLIDLR 654


>gi|151220938|ref|YP_001331760.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|150373738|dbj|BAF66998.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           str. Newman]
          Length = 661

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/658 (52%), Positives = 472/658 (71%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TD ++EK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDAFMEKDASINDEIDQVRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +E
Sbjct: 367 GFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDK-MVEQIIRPTGLLDPKIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   +  D
Sbjct: 546 NDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVEND 605

Query: 741 AATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    AQ +    ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 606 ENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKA 659


>gi|259502733|ref|ZP_05745635.1| excision endonuclease subunit UvrB [Lactobacillus antri DSM 16041]
 gi|259169378|gb|EEW53873.1| excision endonuclease subunit UvrB [Lactobacillus antri DSM 16041]
          Length = 698

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/661 (50%), Positives = 466/661 (70%), Gaps = 9/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +DY P+GDQP AI QL KGI + +K Q+LLG TG+GKTFT++ VI  + +P ++++
Sbjct: 27  FDLVSDYQPTGDQPEAIDQLTKGIENGDKAQILLGATGTGKTFTISNVIANVNKPTLILS 86

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++R+
Sbjct: 87  HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRN 146

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LLERND IVV+SVS I+G+G+   Y   +V L +G  +++  LL  LV  QY R 
Sbjct: 147 AATTALLERNDVIVVASVSSIFGLGNPNEYQNSVVSLHVGQQLDRDFLLRQLVTIQYDRN 206

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   + A R+  FG++I+ I E   LTG+   + E + I+
Sbjct: 207 DIDFQRGRFRVHGDVVEIFPASHSETALRIEFFGDEIDRIREVDALTGEVKGDREEVSIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +    G+LLEA+R++QR TYD+EM+   G   
Sbjct: 267 PATHFMTNEDIMDVALPEIERDMKKQVQQFTDAGKLLEAERIQQRTTYDIEMMREMGYTN 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+  R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 327 GIENYSRYMDRRKPGEPPYTLLDFFPKDYLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + +SATPG +E+EQ    + +QIIRPTGL+DP +E
Sbjct: 387 GFRLPSALDNRPLKLGEFEQHVNQVVYMSATPGPYEMEQTDH-VAQQIIRPTGLLDPTIE 445

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++++  EIN   ++  R+ +T LTK+M+EDLT+YL +  ++V+Y+HS++KTLE
Sbjct: 446 VRPVMGQIDNLVGEINKRIERHERVFVTTLTKKMSEDLTDYLKDLGLKVKYLHSDIKTLE 505

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 506 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 565

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD +T+S+Q AIDET RRR  Q+++N++H+I P ++ + I E I     ++
Sbjct: 566 NEHGAVIMYADEVTESMQKAIDETKRRRSIQMKYNEEHHITPHTIVKPIQEAISAT--KE 623

Query: 741 AATTNISIDAQQLS------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A T    D+ + +      LS+      +  L +QM  AA  L+FE+AA +RD +  LK
Sbjct: 624 TADTGEQADSTEFTTQDFAKLSRDAQTKMVAELTEQMQAAAKRLDFEQAATLRDTVMELK 683

Query: 795 S 795
           +
Sbjct: 684 A 684


>gi|322383005|ref|ZP_08056835.1| excinuclease ABC subunit B-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153028|gb|EFX45488.1| excinuclease ABC subunit B-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 664

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/654 (54%), Positives = 464/654 (70%), Gaps = 2/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AIA+L++G+   +  Q LLG TG+GKTFT A+VI  + RP +V+A
Sbjct: 10  FELVSEYSPQGDQPKAIAELVEGVKQGKAHQTLLGATGTGKTFTAAQVIAQLNRPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP+NAV YFVSYYDYYQPEAY+P +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLAAQLASEFKEFFPNNAVSYFVSYYDYYQPEAYIPSSDTYIEKDSSINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D IVV+SVSCIYG+GS + Y  +++ L++G    + ++L  LV  QY+R 
Sbjct: 130 SATSSLFERRDIIVVASVSCIYGLGSPKEYGSLLLSLRVGMEKSRNDILRRLVDIQYQRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  +RGTFRV GD IEIFP+   + A RV +FG++IE I+E   LTG+ +   E I I+
Sbjct: 190 DMNFVRGTFRVRGDVIEIFPASRSEQAVRVELFGDEIERITEIDVLTGEILGEREHIAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT       A+K I+ EL+ RL EL  +G+LLEAQRLEQR  YD+EM+   G C 
Sbjct: 250 PASHFVTHEDKTKLAVKNIERELEGRLEELRGQGKLLEAQRLEQRTRYDMEMMLEMGFCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  LT R  G  P TL +Y P+D L+ +DESHVT+PQI  MY GD  RK  L E+
Sbjct: 310 GIENYSGPLTFRERGSTPYTLLDYFPDDMLVMIDESHVTLPQIRAMYNGDQARKTVLVEH 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       I +SATPG +ELE C   +VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEQKVKQAIYISATPGPYELEHCPE-MVEQIIRPTGLLDPIIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  E+     +  R+L+T LTK+MAEDLT+YL E  I+VRY+HS++KTLE
Sbjct: 429 VRPTKGQIDDLLAEVQDRIAKDERVLVTTLTKKMAEDLTDYLKEVGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLG F VLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RMQILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+Y D IT S+  AI ET RRR  Q  +NK+H I P +V +KI +VI+   + +
Sbjct: 549 NSEGRVIMYGDKITDSMDKAIRETERRRAIQEAYNKEHGITPTTVAKKIRDVIEATKVAE 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             T  ++ + +   +SK+     ++ L  +M  AA NL FE AA +RD +  LK
Sbjct: 609 QKTEYLA-EVKTAKMSKRDRMKLIERLEAEMKEAAKNLQFERAAELRDAVLELK 661


>gi|116670617|ref|YP_831550.1| excinuclease ABC subunit B [Arthrobacter sp. FB24]
 gi|189037971|sp|A0JWN0|UVRB_ARTS2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|116610726|gb|ABK03450.1| Excinuclease ABC subunit B [Arthrobacter sp. FB24]
          Length = 693

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/671 (51%), Positives = 470/671 (70%), Gaps = 20/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQPAAIA+L + I + EK  +LLG TG+GK+ T A +IE +QRP +VM 
Sbjct: 14  FEVISEFKPAGDQPAAIAELTERIKNGEKDVVLLGATGTGKSATTAWLIEQVQRPTLVMV 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYV +TDT+IEK+SS+NE+++R+RH
Sbjct: 74  QNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVAQTDTFIEKDSSVNEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D IVV++VSCIYG+G+ E Y   +V L+ G  + + +LL   V  QY R 
Sbjct: 134 SATNALLTRRDVIVVATVSCIYGLGTPEEYIAGMVTLRKGAEMNRDDLLRKFVSMQYARN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E++A R+  FG++IE I   +PLTG+ IR+ E + ++
Sbjct: 194 DMDFHRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIENIHTLHPLTGEVIRDEEEMYVF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     ++ A+K I++EL  RL  LE + +L+EAQRL  R TYDLEM++  G C 
Sbjct: 253 PASHYVAGPERMSRAIKRIEDELAERLQVLESQNKLVEAQRLRMRTTYDLEMMQQMGFCN 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR  G  P  L +Y P+D LL +DESHVT+PQI  MY GD  RK  L ++
Sbjct: 313 GIENYSSHIDGRARGTAPHCLLDYFPDDFLLVIDESHVTVPQIGAMYEGDMSRKRNLVDF 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+++E+      T+ +SATPG +EL +  G  V+QIIRPTGL+DP V 
Sbjct: 373 GFRLPSAMDNRPLKWDEFQERVGQTVYLSATPGKYELGKSDGF-VQQIIRPTGLIDPEVV 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI     +  R+L+T LTKRMAEDLT+YL    ++V Y+HS+V TL 
Sbjct: 432 VKPTKGQIDDLLGEIKTRTAKNERVLVTTLTKRMAEDLTDYLLGHGVKVEYLHSDVDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR+G FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 492 RVELLRELRMGVFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+  AIDET RRR  Q+ +N +H I+PQ +++KI ++ D +  ED
Sbjct: 552 NVSGQVHMYADRITDSMAHAIDETNRRRAIQVAYNTEHGIDPQPLRKKIADITDQLAKED 611

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS-----------------LRKQMHLAADNLNFEEA 783
           A T  + + A   +  K KG + +++                 L +QMH AA  L FE A
Sbjct: 612 ADTREL-LAASGKTRGKGKGASTVRADGLAAAPAEDLVGLIEQLTEQMHAAAGELQFELA 670

Query: 784 ARIRDEIKRLK 794
           AR+RDE+  LK
Sbjct: 671 ARLRDEVGELK 681


>gi|315924531|ref|ZP_07920750.1| excision endonuclease subunit UvrB [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622061|gb|EFV02023.1| excision endonuclease subunit UvrB [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 662

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/656 (52%), Positives = 466/656 (71%), Gaps = 7/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQ  AI ++ KGI    K Q LLGVTGSGKT+TMAKVIEA+Q+P +++A
Sbjct: 12  FEVVSDYEPKGDQGQAIEKIAKGIKKGLKYQTLLGVTGSGKTYTMAKVIEAVQKPTLIIA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF++FFP+NAVEYFVSYYDYYQPEAYVP  D YIEK+SSIN++ID++RH
Sbjct: 72  HNKTLAAQLANEFRSFFPNNAVEYFVSYYDYYQPEAYVPGRDIYIEKDSSINDEIDKLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS   Y  +++ L+ G   ++ +++  LV+ QY R 
Sbjct: 132 SATAALFERRDVIIIASVSCIYGLGSPIDYENLVLSLRPGMVKDRDDIIRKLVEIQYTRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DIG  R  FRV GD +EIFP+   D A R+  F ++I+ I+E   +TG+    +  I I+
Sbjct: 192 DIGFERNNFRVRGDVLEIFPAASTDKAVRIEFFDDEIDRITEINVITGEITGELSHISIF 251

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T    L +A+K I+EEL  R     +  RL+EAQR+ QR  YDLEML+  G C 
Sbjct: 252 PASHYTTTPERLESAIKGIREELGERYAWFNEHNRLVEAQRILQRTNYDLEMLQEMGYCT 311

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R++ G + G PP TL +Y P+D L+  DESHV+IPQI GM  GD  RK  L +Y
Sbjct: 312 GIENYTRHINGISAGSPPYTLIDYFPDDFLMIADESHVSIPQIGGMSAGDRARKKNLVDY 371

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F+E+       +  +ATPG +E +  +  IVEQ+IRPTGL+DP + 
Sbjct: 372 GFRLPSAYDNRPLTFQEFEGKIHQMVFTTATPGPYEKKHSEQ-IVEQLIRPTGLLDPKIS 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI        R+L+T LTK+MAEDLT+YL +  +RVRY+HS++ T+E
Sbjct: 431 VRPIKGQIDDLLGEIRETTSHRERVLITTLTKKMAEDLTDYLKDNGVRVRYLHSDIDTIE 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLGKFDVLVGINLLREGLD+PE GLVA+LDADKEG+LRS+TSL+QTIGRAAR
Sbjct: 491 RMEILRDLRLGKFDVLVGINLLREGLDLPEVGLVAVLDADKEGYLRSETSLVQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD ITKS+  AI ET RRR  Q  +N+KH+I P++V + I +VI+   +  
Sbjct: 551 NADGRVIMYADNITKSMDRAITETNRRRRIQQAYNEKHHITPKTVVKDIHDVIE---VTK 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A    + DA+   +  +  +  +  LRKQM  AA +L FE+AA +RD+I+RL+++
Sbjct: 608 VAEKPEAYDAK---VQPEPAEMDINELRKQMQEAAAHLEFEKAAALRDQIQRLEAA 660


>gi|294782396|ref|ZP_06747722.1| excinuclease ABC subunit B [Fusobacterium sp. 1_1_41FAA]
 gi|294481037|gb|EFG28812.1| excinuclease ABC subunit B [Fusobacterium sp. 1_1_41FAA]
          Length = 663

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/651 (53%), Positives = 471/651 (72%), Gaps = 4/651 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ ++Y P GDQP AI  ++K I    K Q+LLGVTGSGKTFT+A VIE +QRPA++
Sbjct: 4   NLFKIHSEYKPMGDQPTAIESIVKNIERGVKDQVLLGVTGSGKTFTIANVIERLQRPALI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID++
Sbjct: 64  IAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     +E+KEL+  L+  +Y+
Sbjct: 124 RNAATAALIHRRDVIIVASVSSIYGLGSPDTYRKMTIPIDKQTGIERKELMKKLIALRYE 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETI 377
           R DI   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQKI+ N+E I
Sbjct: 184 RNDIAFERGKFRIKGDVIDIYPSYMNN-GYRLEYWGDDLEEISEINTLTGQKIKKNLERI 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + Y+T     +  ++ IK++L++ +   E E +LLEAQRL QR  YDLEM+   G
Sbjct: 243 VIYPATQYLTADDDKDRIIEEIKDDLRVEVKSFEDEKKLLEAQRLRQRTEYDLEMITEIG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSRYL+G+ PGE P TLFEY P+D LLF+DESH+T+PQ+ GMY GD  RK  L
Sbjct: 303 YCKGIENYSRYLSGKRPGETPDTLFEYFPKDFLLFIDESHITVPQVRGMYNGDRARKEAL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E GFRL + +DNRPLRFEE+      T+ +SATPG +E+E     I EQ+IRPTG+VDP
Sbjct: 363 VENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNNIAEQLIRPTGIVDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR  + QV+D+ DEI     +  R+L+T LTK++AE+LTEY  E  ++V+YMHS++ 
Sbjct: 423 EIEIRPTKNQVDDLLDEIRKRVAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEIIR LR G+ DV+VGINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTIGR
Sbjct: 483 TLERIEIIRALRKGEIDVIVGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  +NI+P+S+ ++I E  D I 
Sbjct: 543 AARNVEGRVILYADIMTDSMKEAIIETERRRKIQKEYNAYNNIDPKSIVKEIAE--DLIN 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           L+         + +++  SK   +  +  L K++      L+FE+A  +RD
Sbjct: 601 LDYGIEDKKFENDKKVFRSKADIEKEIIKLEKKIKKLVGELDFEQAIVLRD 651


>gi|242372993|ref|ZP_04818567.1| excinuclease ABC subunit B [Staphylococcus epidermidis M23864:W1]
 gi|242349319|gb|EES40920.1| excinuclease ABC subunit B [Staphylococcus epidermidis M23864:W1]
          Length = 661

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/655 (52%), Positives = 469/655 (71%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P GDQP AI +++ G++  ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKLNSEFEPQGDQPQAIQKIVDGVNEGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++++ I E   LTG+ IR  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEVDRIREVNYLTGEVIREREHFAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQI GMY GD  RK  L ++
Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLVDH 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP V+
Sbjct: 367 GFRLPSALDNRPLKFEEFEDKTKQLVYVSATPGPYELEHTDE-MVEQIIRPTGLLDPKVD 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTLE
Sbjct: 426 VRPTENQIDDLLSEIQERVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +D +VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT S+Q AIDET RRR+ Q  HN+K+ I P+++ +KI +VI   +  D
Sbjct: 546 NDKGEVIMYADKITDSMQYAIDETQRRRDIQTAHNEKYGITPRTINKKIHDVISATVESD 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                   +  +  ++KK+ +  ++++ K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 606 ETNEQKQTELPK-KMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKA 659


>gi|169629394|ref|YP_001703043.1| excinuclease ABC subunit B [Mycobacterium abscessus ATCC 19977]
 gi|169241361|emb|CAM62389.1| UvrABC system protein B (UvrB protein) excinuclease [Mycobacterium
           abscessus]
          Length = 719

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/690 (51%), Positives = 476/690 (68%), Gaps = 30/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIA+L + + + EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 28  FEVVSQYEPAGDQPGAIAELERRVRAGEKDVVLLGATGTGKSATTAWLIERLQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 88  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    VQL +G  V +  LL  LV  QY R 
Sbjct: 148 SATSNLLSRRDVVVVASVSCIYGLGTPQSYLDRSVQLDVGLEVPRDALLRLLVDMQYNRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI PS+ E++A R+  FG+++E +   +PLTG  +R   +++I+
Sbjct: 208 DMAFTRGTFRVRGDTVEIIPSY-EELAVRIEFFGDEVEALYYLHPLTGDVVRQTNSLRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A++ I++EL+ RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 267 PATHYVAGPERMGKALEGIEQELEERLSELEGQGKLLEAQRLRMRTNYDIEMMRNVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G PP TL +Y P+D LL +DESHVT+PQI  MY GD  RK  L ++
Sbjct: 327 GIENYSRHIDGRGAGTPPATLLDYFPDDFLLVIDESHVTVPQIGAMYEGDMSRKRNLVDF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE+      T+ +SATPG++E     G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSAVDNRPLTWEEFADRIGQTVYLSATPGNYERSAAGGEFVEQVIRPTGLVDPKVV 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+   I    +   R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 447 VKPTKGQIDDLIASIRQRTEADERVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YADT+T S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D +  E 
Sbjct: 567 NVSGEVHMYADTMTDSMKEAIDETDRRRAKQIAYNQANGIDPQPLRKKIADILDQVYREA 626

Query: 741 AATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQMHL 773
             T  +++     + S+ +      G+A                      +K + +QM  
Sbjct: 627 EDTEEVAVGGSGRNSSRGRRAQGEPGRAVSAGVFEGRDTKTMPRAELADLIKDMTEQMMT 686

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           AA +L FE AAR RDEI  LK     +G+D
Sbjct: 687 AARDLQFELAARFRDEIADLKKE--LRGMD 714


>gi|227432640|ref|ZP_03914616.1| excision endonuclease subunit UvrB [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351610|gb|EEJ41860.1| excision endonuclease subunit UvrB [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 669

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/659 (50%), Positives = 474/659 (71%), Gaps = 7/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y P+GDQP AI +L+ GI++  K Q+LLG TG+GKTFT++ VI+ +++P +V++
Sbjct: 10  FEIKSKYEPTGDQPQAIEKLVGGINNHVKEQILLGATGTGKTFTISNVIKEVKKPTLVLS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S++N++ID++R+
Sbjct: 70  HNKTLAGQLYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNDEIDKLRN 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y   ++ L++G   E+ +L+  L+  Q+ R 
Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPHQYKDHVISLRVGYEYERDQLMRDLIDVQFTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD IEIFP+  +++A R+  FG++I+ I E   LTG+ I   + + I+
Sbjct: 190 DIDFHRGTFRVRGDVIEIFPASQDEMALRIEFFGDEIDRIREINSLTGETIAERDHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T    +  A+  I++E+  ++   +KEG+LLEAQR++QR  YDL MLE  G   
Sbjct: 250 PAKHFMTDDDQMQVALDGIRQEMNTQVELFKKEGKLLEAQRIKQRTEYDLAMLEEMGFVG 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++  +D L+ +DESHVT+PQI GM+ GD  RK TL  Y
Sbjct: 310 GIENYSRWMDGRQAGEPPFTLIDFFLDDFLIVIDESHVTMPQIRGMFNGDKARKETLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI-IVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+  E+       I +SATPG +E E+     +++QIIRPTGL+DP V
Sbjct: 370 GFRLPSALDNRPLKLPEFEKHVNQIIYMSATPGDYENERVDSKHVIQQIIRPTGLLDPEV 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI   +++  R+ +T LTKRMAEDLT+YL +  I+V Y+H+++KTL
Sbjct: 430 EVRPVMGQIDDLVGEITKRSERDERVFITTLTKRMAEDLTDYLKDLGIKVAYLHADIKTL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIRDLRLGK+DVL+GINLLREG+D+PE  LVAILDADKEGFLR+  SLIQTIGRAA
Sbjct: 490 ERTEIIRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNPRSLIQTIGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VI+YAD +T+S+  AIDET RRRE Q+++N +H I P+++K+ I ++I    + 
Sbjct: 550 RNENGHVIMYADKMTRSMLEAIDETARRREIQMQYNTQHGITPKTIKKDIRDLIS---VT 606

Query: 740 DAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            AAT    +D  +++   L K + ++ + ++  QM  AA  L+FEEAA++RD +  LK+
Sbjct: 607 HAATEEKVVDLTKVAFNDLPKDEQQSIVDNMTSQMKAAAKALDFEEAAQLRDTVMELKT 665


>gi|158522387|ref|YP_001530257.1| excinuclease ABC subunit B [Desulfococcus oleovorans Hxd3]
 gi|158511213|gb|ABW68180.1| excinuclease ABC, B subunit [Desulfococcus oleovorans Hxd3]
          Length = 666

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/667 (51%), Positives = 453/667 (67%), Gaps = 10/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           + + T + P+GDQP AI +L   I S  +  + +GVTGSGKTFTMA VI  ++RPA+++A
Sbjct: 2   YDLTTSFTPAGDQPRAIRRLCDQIRSGRRHNVFVGVTGSGKTFTMAHVIAELKRPALIIA 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+EF   FP NAVEYFVSYYD+YQPEAY+P TDTYI+K+SSIN+ ID+MRH
Sbjct: 62  PNKTLAAQLYNEFHALFPRNAVEYFVSYYDFYQPEAYLPVTDTYIQKDSSINDTIDKMRH 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+L R D IVV+SVSCI+G+GS E Y  + V+L  G  +++  LL+ LV  QY+R 
Sbjct: 122 SATRSVLSRPDVIVVASVSCIFGLGSPEDYRGLRVELAPGMELDRDRLLADLVAIQYERN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD ++IFP+  E+ A RV  FG+++E + E  PL G     +    IY
Sbjct: 182 DYDFSRGVFRVRGDRVDIFPASEEEAALRVEFFGDEVEALFEIDPLKGSVRGKIPRAVIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVT +      +  + EELK+R+      G+L+EAQR+E+R  +DLEM+   G C 
Sbjct: 242 PATHYVTRQQDRKAIVDRVNEELKVRIDHFRAAGKLIEAQRIEERTRFDLEMILEMGYCN 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PG+PP TL +Y P+D LLF+DE H+T+PQ+  MY+GD  RK+TL E+
Sbjct: 302 GIENYSRHLTGREPGQPPATLLDYFPDDFLLFLDECHITVPQLGAMYKGDHSRKSTLVEF 361

Query: 501 GFRLPSCMDNRPLRFEEW--NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           GFRLPS +DNRPL FEE+     R   I VSATP ++E  +    + EQI+RPTGLVDP 
Sbjct: 362 GFRLPSALDNRPLTFEEFEEKTGRAAVIYVSATPAAYEYRKAGDAVAEQIVRPTGLVDPR 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+RSA  QV+ ++DEI    ++  R+L+T LTKRMAEDLT+Y  E  ++ RY+HSEVKT
Sbjct: 422 IEVRSAENQVDHLFDEIRARVEKNERVLITTLTKRMAEDLTDYYAELGVKTRYLHSEVKT 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER+ +I +LR G  DVL+GINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQ  GRA
Sbjct: 482 LERMAVISELRRGDVDVLIGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQIFGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN  VILYAD IT ++  A+DET RRR+ Q  +N  H+I P++    I + + P   
Sbjct: 542 ARNVNGTVILYADRITDAMARAMDETNRRRKIQATYNTDHHITPRT----IFKEMSPDFG 597

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHL----KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      A   +L++      L    + L K+M  AAD+  FE+AA IRD I  L+
Sbjct: 598 AQGGDRAGPSAAVAETLARYGDTDDLDEIIRRLEKEMKAAADDYEFEKAADIRDRIAALR 657

Query: 795 SSPYFQG 801
               F G
Sbjct: 658 KLIVFDG 664


>gi|291458862|ref|ZP_06598252.1| excinuclease ABC subunit B [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418116|gb|EFE91835.1| excinuclease ABC subunit B [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 660

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/661 (52%), Positives = 463/661 (70%), Gaps = 3/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++  DY P+GDQP AI +L++G     + Q LLGVTGSGKTFTMA VIE ++RP ++++
Sbjct: 3   FKLHADYAPTGDQPKAIEELVRGFQEGNQFQTLLGVTGSGKTFTMANVIERLKRPTLIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K FFP N+VEYFVSYYDYYQPEAYVP TDTYIEK+S INE+ID++R+
Sbjct: 63  HNKTLAAQLYSEMKEFFPENSVEYFVSYYDYYQPEAYVPSTDTYIEKDSDINEEIDKLRN 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +L ER D +VV+SVSCIYG+G+   Y  M + L+ G S ++ E++  L++ QY R 
Sbjct: 123 SAMAALSERRDVVVVASVSCIYGLGAPTEYLNMALSLRPGQSKDRDEMIRHLIEIQYNRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +++FP+   + A+R+  FG++I+ I    PL+G+    +  + I+
Sbjct: 183 DMDFHRGTFRVMGDIVDVFPASEGEQAYRIEFFGDEIDRIRIIDPLSGKAKSELSHVMIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S YV P   L+ A   I +EL+ R+   + E +LLEAQR+ +R  +D+EML  TG C 
Sbjct: 243 PASPYVIPPEKLSLACDNILKELEERVNYFKSEDKLLEAQRISERTNFDVEMLRETGVCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L    PGEPP TL +Y PED L+ VDESH+++PQI GMY G+  RK TL +Y
Sbjct: 303 GIENYTRHLNFSAPGEPPYTLMDYFPEDFLIIVDESHISLPQIRGMYNGNLSRKTTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATPG +E E  + +  EQIIRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLNFGEFERKINQMLFVSATPGDYEAEH-ELLRAEQIIRPTGLLDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+  EI    ++  +IL+T LTKRMAEDLT+YL E  I V+Y+HS++ TLE
Sbjct: 422 VRPIRGQIDDLIGEIRRETEKKHKILVTTLTKRMAEDLTKYLKEAGILVKYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  IIRD+RLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQT+GRAAR
Sbjct: 482 RAAIIRDMRLGKFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTVGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S++  + ET RRR+ Q+ +N++H I P ++K+ + E+I       
Sbjct: 542 NAEGHVIMYADQITDSMRRTMQETERRRKIQISYNEEHGITPTTIKKAVRELIAISKAVS 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
            + + I  DA+  S+S ++ +  ++ L K+M  AA  LNFEEAA  RD I+ L+     +
Sbjct: 602 DSGSGIQKDAE--SMSARELEKLIRELTKRMRAAAAELNFEEAALCRDRIEELRKQKEGE 659

Query: 801 G 801
           G
Sbjct: 660 G 660


>gi|15807266|ref|NP_295996.1| excinuclease ABC subunit B [Deinococcus radiodurans R1]
 gi|6460084|gb|AAF11823.1|AE002060_2 excinuclease ABC, subunit B [Deinococcus radiodurans R1]
          Length = 730

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/660 (51%), Positives = 470/660 (71%), Gaps = 10/660 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           ++   ++++++ PSGDQP AIA L+ G+ S  + Q LLG TG+GKT++MAKVIE +QRPA
Sbjct: 57  EVVMLKVRSEFKPSGDQPTAIASLVDGLESGLRYQTLLGATGTGKTYSMAKVIEEVQRPA 116

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           ++MAPNKIL AQL SEF+ FFP  AVE+F+SYYDYYQPEAYVP  D +IEK++S+N++I+
Sbjct: 117 LIMAPNKILTAQLASEFREFFPDAAVEFFISYYDYYQPEAYVPGKDLFIEKDASVNQEIE 176

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           R+RHS TRSLL R D IVV+SVSCIYG+G  + Y+ +   +K G  + + ELL  LV  Q
Sbjct: 177 RLRHSTTRSLLTRRDTIVVASVSCIYGLGDPKEYTALNAIVKKGGVMPRDELLGRLVNMQ 236

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R DI ++ G F V G+++ ++P++ E    R+ ++G+D+E IS  +PLTG+++ +++ 
Sbjct: 237 YERNDIELMPGRFSVKGETVTVWPAYDEQ-PLRIELWGDDVERISVVHPLTGERLGDLDA 295

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y   HYV+    +  A+  I++EL  RL      G+LLEAQRL++R  YDLEML+  
Sbjct: 296 TVVYPAKHYVSSAGNIERAIGSIQQELDERLEYFHSVGKLLEAQRLKERTLYDLEMLKVL 355

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSR++ GR PG  P T+ +Y P+D + F+DESHVT+PQI GM  GD  RK T
Sbjct: 356 GYCSGIENYSRHIDGRAPGATPYTMLDYFPDDFITFIDESHVTVPQIGGMANGDRARKQT 415

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS MDNRPL FEE+      T+ VSATPG +E  Q    + +QIIRPTGLVD
Sbjct: 416 LVDYGFRLPSAMDNRPLNFEEFLSKTGQTVFVSATPGPFE-NQVSDSVADQIIRPTGLVD 474

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P V IR  + Q+ED+   +      G R L+T LTKRM+EDLTEYL E+ ++ RY+HS++
Sbjct: 475 PEVTIRPIQGQIEDLLGRVRERTAAGERTLVTTLTKRMSEDLTEYLLEKGVKARYLHSDI 534

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            ++ER  IIRDLRLG +DVLVGINLLREGLD+PE  LVAILDADK GFLRS  +LIQTIG
Sbjct: 535 DSVERQVIIRDLRLGHYDVLVGINLLREGLDLPEVSLVAILDADKPGFLRSDRALIQTIG 594

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN +VILYAD +T +++ A+DET RRREKQL +N++H I P++V + + +VI   
Sbjct: 595 RAARNVNGEVILYADVVTPAMRFAMDETARRREKQLAYNEEHGITPRTVIKGVRDVIRGE 654

Query: 737 LLE-DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            LE + ++ N+S D   L+       A L  L   M  A++ ++FE+AA +RD+I+ +++
Sbjct: 655 ELEGEISSENVSGDRDSLT-------AQLTDLELDMWQASEAMDFEKAASLRDQIRAIEA 707


>gi|44455|emb|CAA31090.1| unnamed protein product [Micrococcus luteus]
          Length = 709

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/688 (51%), Positives = 473/688 (68%), Gaps = 36/688 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AIA+L + + + EK  +L+G TG+GK+ T A ++E +QRP +VM 
Sbjct: 14  FEVISPYQPSGDQPKAIAELAERVEAGEKDVVLMGATGTGKSATTAWLVERLQRPTLVMV 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+RH
Sbjct: 74  QNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D IVV++VSCIYG+G+ E Y + +V L+ G  +++  LL   V+ QY R 
Sbjct: 134 SATNALLTRRDVIVVATVSCIYGLGTPEEYIEQMVTLRRGAEMDRDVLLRRFVQMQYVRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E++A R+  FG++IE I   +PLTGQ +R  E + I+
Sbjct: 194 DVDFHRGTFRVRGDTVEIIPMY-EELAVRIEFFGDEIESIQTLHPLTGQVVREEEEMYIF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I++EL+ RL ELE + +LLEAQRL  R TYDLEM++  G C 
Sbjct: 253 PASHYVAGDERMGRAITTIEDELRERLQELESQDKLLEAQRLRMRTTYDLEMMQQMGYCN 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P  L +Y P+D LL VDESHVTIPQ   MY GD  RK TL E+
Sbjct: 313 GIENYSRHIDGRPAGSAPHCLLDYFPDDFLLVVDESHVTIPQYGAMYEGDMSRKRTLLEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRP++++E+      T+ +SATPG++EL Q  G  VEQIIRPTGLVDP V 
Sbjct: 373 GFRLPSAMDNRPVKWDEFLERIGQTVYLSATPGAYELGQADGY-VEQIIRPTGLVDPQVV 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ ++I +   +  R+L+T LTKRMAEDLT+YL E  ++V Y+HS+V TL 
Sbjct: 432 VKPTEGQIDDLLEQIRVRTAKDERVLVTTLTKRMAEDLTDYLLEAGVKVEYLHSDVDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 492 RVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YA  +T S++ AI+ET RRR  Q+ +N++H I+PQ ++++I ++ D +  ED
Sbjct: 552 NVSGEVHMYAGNVTDSMRRAIEETERRRAVQIAYNEEHGIDPQPLRKRIADITDQLARED 611

Query: 741 AATTNI---------------------SID-------------AQQLSLSKKKGKAHLKS 766
           A T +                      S+D                 SL  K     ++ 
Sbjct: 612 ADTADFLKGMGGVKSGFDFGMGHRGLSSLDRAPATGEGAAAPAVDPASLPAKDLADLIEQ 671

Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + +QMH AA +L FE AAR+RDE+  LK
Sbjct: 672 MSQQMHQAAADLQFELAARLRDEVGELK 699


>gi|58697071|ref|ZP_00372524.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536653|gb|EAL59959.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 590

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/556 (59%), Positives = 419/556 (75%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           ++S ++ Q+LLGVTGSGKTFTMA VI    RPA++MA NK LAAQLY E K  FPHNAVE
Sbjct: 3   LNSNKRDQVLLGVTGSGKTFTMANVIARTNRPALIMAHNKTLAAQLYEEMKGLFPHNAVE 62

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
           YF+SYYDYYQPEAY+P+TDTYIEK+S+INE+I+ +R+S   SLLER D IVV+SVSCIYG
Sbjct: 63  YFISYYDYYQPEAYLPQTDTYIEKDSAINERIEMLRYSTVCSLLERRDTIVVASVSCIYG 122

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +GS ESY  MI+ L +G+ +   + LS+L   QYKR D    RG FRV GD ++IF SH 
Sbjct: 123 LGSPESYRSMIIPLSVGNKIRINDFLSNLTDLQYKRSDARFERGYFRVRGDIVDIFLSHY 182

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E+ AWR+S+FG++IEEISE   +TG   + V  I I+ NS+Y+TPR  L  A++ +K+EL
Sbjct: 183 ENKAWRLSLFGDEIEEISEVDAITGNVTKGVNKITIFPNSYYITPREALLQAIELVKKEL 242

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
             RL     + +++EA+RLEQR  +D+EM+ TTG C+ IENYSRYL G   G+PPPTLFE
Sbjct: 243 HERLDYYYSQNKIVEAKRLEQRTNFDIEMMRTTGICKGIENYSRYLYGMEAGDPPPTLFE 302

Query: 464 YIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP 523
           Y+P+D +LFVDESHVT+PQ+  MY G+  RK  L +YGFRLPS  DNRPL+FEEW  +RP
Sbjct: 303 YLPKDVILFVDESHVTVPQVGAMYSGNEARKKKLIDYGFRLPSAFDNRPLKFEEWEGVRP 362

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T+ +SATPG +EL +   + +EQ+IRPTGL DP   ++   +Q++DV  E  +   +G 
Sbjct: 363 QTVYISATPGKYELAKTNNVFIEQVIRPTGLTDPICIVKPIESQIDDVIHEAQVTIGKGF 422

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
            +L+T LTK+MAE+L EY+ E N++V Y+HS++  LERIEII  LR  + DVLVG+NLLR
Sbjct: 423 CVLITTLTKKMAENLAEYMSELNMKVSYLHSDIAALERIEIIYKLRSKEIDVLVGVNLLR 482

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
           EGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARN   +VILYAD IT S+  A+ E
Sbjct: 483 EGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNAEGRVILYADKITGSLDRALRE 542

Query: 704 TTRRREKQLEHNKKHN 719
           T RRR+KQ EHN  HN
Sbjct: 543 TERRRKKQEEHNILHN 558


>gi|297518079|ref|ZP_06936465.1| excinuclease ABC subunit B [Escherichia coli OP50]
          Length = 564

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/560 (60%), Positives = 423/560 (75%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLA 700
           NVN K ILY D IT S+  A
Sbjct: 545 NVNGKAILYGDKITPSMAKA 564


>gi|325963172|ref|YP_004241078.1| excinuclease ABC subunit B [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469259|gb|ADX72944.1| Excinuclease ABC subunit B [Arthrobacter phenanthrenivorans Sphe3]
          Length = 698

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/675 (51%), Positives = 470/675 (69%), Gaps = 23/675 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQPAAIA+L + I++ EK  +LLG TG+GK+ T A +IE +QRP +VM 
Sbjct: 14  FEVISEFKPAGDQPAAIAELTERINNGEKDVVLLGATGTGKSATTAWLIEQVQRPTLVMV 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+RH
Sbjct: 74  QNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D IVV++VSCIYG+G+ E Y   +V L+ G  + +  LL   V  QY R 
Sbjct: 134 SATNALLTRRDVIVVATVSCIYGLGTPEEYIAGMVTLRKGQEMNRDALLRKFVSMQYARN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E++A R+  FG+++E I   +P+TG+ IR    + ++
Sbjct: 194 DMDFHRGTFRVRGDTVEIIPMY-EELALRIEFFGDEVENIYTLHPVTGEVIREETEMYVF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+K I++EL  RL  LE + +L+EAQRL  R TYDLEM++  G C 
Sbjct: 253 PASHYVAGPERMGRAIKSIEDELADRLAVLEGQNKLVEAQRLRMRTTYDLEMMQQMGFCN 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P  L +Y P+D LL VDESHVTIPQI  MY GD  RK TL ++
Sbjct: 313 GIENYSRHIDGRAGGTAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYEGDMSRKRTLVDH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+++E+      T+ +SATPG +EL +  G  V+QIIRPTGL+DP V 
Sbjct: 373 GFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGKYELGKADGF-VQQIIRPTGLIDPEVI 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI    ++  R+L+T LTKRMAEDLT+YL    I+V Y+HS+V TL 
Sbjct: 432 VKPTKGQIDDLLGEIRTRVEKDERVLVTTLTKRMAEDLTDYLLGHGIKVEYLHSDVDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR+G FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 492 RVELLRELRMGSFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+  AIDET RRR  Q+ +NK+H ++PQ +++KI ++ D +  ED
Sbjct: 552 NVSGQVHMYADRITDSMANAIDETNRRRAIQVAYNKEHGVDPQPLRKKIADITDQLARED 611

Query: 741 AATTNI--------------------SIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLN 779
           A T  +                     + +  L+ +  +    L + L +QMH AA  L 
Sbjct: 612 ADTQELLNNNRLAKGGKRKAAAKGAAQVRSDGLAAAPAEDLVGLIEQLTEQMHGAAAELQ 671

Query: 780 FEEAARIRDEIKRLK 794
           FE AARIRDE+  LK
Sbjct: 672 FEVAARIRDEVSELK 686


>gi|86132353|ref|ZP_01050948.1| excinuclease ABC, B subunit [Dokdonia donghaensis MED134]
 gi|85817272|gb|EAQ38455.1| excinuclease ABC, B subunit [Dokdonia donghaensis MED134]
          Length = 666

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/655 (51%), Positives = 465/655 (70%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+D+ P+GDQP+AI QL+ GI+  E  Q LLGVTGSGKTFT+A VI+  ++P +++A
Sbjct: 3   FKLQSDFKPTGDQPSAIKQLVDGINKNETYQTLLGVTGSGKTFTVANVIQETEKPTLILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEA++P +  YIEK+ SINE+I++MR 
Sbjct: 63  HNKTLAAQLYSEFKAFFPDNAVEYFVSYYDYYQPEAFIPSSGVYIEKDLSINEEIEKMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IVV+SVSC+YGIG+   + + I ++K    + +   L  LV+  Y R
Sbjct: 123 STTTSLLSGRRDVIVVASVSCLYGIGNPAEFEKNITEIKQDQVMARTMFLKKLVQGLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +    RG FR+ GD++E+FP +  D+A+RV  FG++IEEI  F P + + I     ++I
Sbjct: 183 TEGEFNRGNFRIKGDTVEVFPGY-ADMAFRVHFFGDEIEEIEAFDPASAEVIEKYSRLRI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +  L  A+  I E+L  ++   E+ G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSQDVLQGAINQIGEDLTKQVSFFEEVGKHLEAKRLDERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L ++ P+D L+ VDESHVT+ Q+S MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDFFPDDYLMVVDESHVTVSQVSAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEEW  ++   I VSATP  +EL++ +G  VEQIIRPTGL+DP V
Sbjct: 362 YGFRLPAAMDNRPLKFEEWEMMQNQVIYVSATPADYELQKSEGTYVEQIIRPTGLLDPIV 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EIN   ++  R+L+T LTKRMAE+LT+YL   +IR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLIEEINKVTERNERVLVTTLTKRMAEELTKYLTRIDIRTRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+E+++DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QTIGRAA
Sbjct: 482 ERVELMQDLRKGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736
           RNVN K I+YAD ITKS+Q  ID++  RR+KQ+++N K+ + P ++K+ +   +   +  
Sbjct: 542 RNVNGKAIMYADKITKSMQETIDDSNYRRQKQIDYNNKNGLTPMAIKKSLDNALTRKETY 601

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            +E     N++ +  +  L+K + +  ++S RK M  AA  L+F +AA++RD+IK
Sbjct: 602 KIEAEELVNLAAEDAEEYLTKPQIEKKIRSTRKAMEAAAKELDFMQAAKLRDQIK 656


>gi|258404926|ref|YP_003197668.1| excinuclease ABC subunit B [Desulfohalobium retbaense DSM 5692]
 gi|257797153|gb|ACV68090.1| excinuclease ABC, B subunit [Desulfohalobium retbaense DSM 5692]
          Length = 665

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/656 (51%), Positives = 454/656 (69%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ TD  P GDQP AI +L   + +    Q+LLGVTGSGKTFT+A V+  + RP +VMA
Sbjct: 5   FQLVTDMVPKGDQPKAIEKLCANLEAGVSDQVLLGVTGSGKTFTVANVVARLNRPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEFK  FP+NAVEYFVSYYDYYQPEAY+P +DTYIEK+SSINE ID++RH
Sbjct: 65  PNKTLAAQLYSEFKELFPNNAVEYFVSYYDYYQPEAYLPHSDTYIEKDSSINEDIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R D ++V+SVSCIYG+GS E Y +M+V + +G ++   +L+S LV+ QY+R 
Sbjct: 125 AATHALLTRRDVLIVASVSCIYGLGSPEYYEKMVVPVHVGQNLAMDQLMSRLVEIQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD +E+ P++  + A R+  FG++I+ + E  PLTG+ +   E   I+
Sbjct: 185 DYDFHRGTFRVRGDVLELIPAYRHERALRIEFFGDEIDALYETDPLTGEVLGPQEKALIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV+ +  L  A+  I++EL+ RL    +E RL+EAQRLEQR   DLEM+E  G C 
Sbjct: 245 PGSHYVSDQENLKRAIDDIRDELRARLTWYREENRLVEAQRLEQRTQLDLEMIEELGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR P  PP  L +Y P D LLF+DESHV++PQI GM+ GD  RK TL ++
Sbjct: 305 GIENYSRHLDGRAPESPPSCLLDYFPSDFLLFLDESHVSVPQIGGMFNGDRSRKQTLVDF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+      T+ VSATPG+WE ++  G I+EQ+IRPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLSFDEFLKRLNQTVYVSATPGNWERDRASGEIIEQVIRPTGLLDPQVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E      +  R+L+T LTKR+AEDLTE+L+ R +  RYMHS++ TLE
Sbjct: 425 VRPTGGQMDDLLAECRQRMDKDERVLITTLTKRLAEDLTEFLHSRGVPSRYMHSDIDTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII+ LR G F  LVGINLLREGLD+PE  LVA+LDADKEGFLRS  SLIQT GRAAR
Sbjct: 485 RVEIIQSLRRGDFHALVGINLLREGLDLPEVSLVAVLDADKEGFLRSARSLIQTFGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  V+LYAD  T +++ A+DE+ RRR  Q   N +H I P+S++++    +     E 
Sbjct: 545 NRNGCVLLYADKKTPAMREAMDESHRRRSLQEAFNLEHGITPESIRKRSGHALAHAGKEQ 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +     +          +K +  +  L ++M  AA +L FE AA +RDE +RL+ +
Sbjct: 605 SEMAKAAETTSSYGSDPQKLEKAIARLEREMRQAAKDLAFERAASLRDEAQRLRQT 660


>gi|183982451|ref|YP_001850742.1| excinuclease ABC (subunit B-helicase) UvrB [Mycobacterium marinum
           M]
 gi|183175777|gb|ACC40887.1| excinuclease ABC (subunit B-helicase) UvrB [Mycobacterium marinum
           M]
          Length = 726

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/693 (51%), Positives = 479/693 (69%), Gaps = 33/693 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I + E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 32  FEVISPHDPAGDQPAAINELERRIRAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 91

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 92  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 151

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+L++G  V +  LL  LV  QY R 
Sbjct: 152 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELQVGTDVPRDGLLRLLVDVQYTRN 211

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG  +R V++++I+
Sbjct: 212 DLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGDVVRQVDSLRIF 270

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE  G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 271 PATHYVAGPERMAQAISTIEEELAERLAELEGHGKLLEAQRLRMRTNYDIEMMRQVGFCS 330

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED LL +DESHVT+PQI GMY GD  RK  L E+
Sbjct: 331 GIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEF 390

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL++EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 391 GFRLPSAVDNRPLQWEEFADRIGQTVYLSATPGPYELSQSGGEFVEQVIRPTGLVDPKVV 450

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A+   R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 451 VKPTKGQIDDLIGEIRQRAEADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 510

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 511 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTIGRAAR 570

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739
           NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D +  E 
Sbjct: 571 NVSGEVHMYADKITDSMKEAIDETERRRAKQVAYNEANGIDPQPLRKKIADILDQVYREA 630

Query: 740 --DAATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQ 770
               A  ++ I     + S+ +      G+A                      +K L  Q
Sbjct: 631 DDTEAAESVPIGGSGRNSSRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTSQ 690

Query: 771 MHLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           M +AA +L FE AAR RDEI  LK     +G+D
Sbjct: 691 MMVAARDLQFELAARFRDEIADLKKE--LRGMD 721


>gi|88809951|ref|ZP_01125456.1| excinuclease ABC subunit B [Synechococcus sp. WH 7805]
 gi|88786141|gb|EAR17303.1| excinuclease ABC subunit B [Synechococcus sp. WH 7805]
          Length = 678

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/669 (52%), Positives = 454/669 (67%), Gaps = 16/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   Y P GDQP AI QL+  ++  ++ Q LLG TG+GKTFTMA VI    RPA+V+A
Sbjct: 4   FDLTAPYSPKGDQPTAIKQLVARVNDGQRYQTLLGATGTGKTFTMANVIAQTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFPHNAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPHNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G+++  +  L  LV  QY R 
Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGETLNIRGQLRELVNNQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I RG FR+ GD +EI P++ ED   RV +FG+++E I    P TG+ ++++ETI IY
Sbjct: 184 DTEIARGRFRMKGDVLEIGPAY-EDRLVRVELFGDEVEAIRYVDPTTGEILQSLETINIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L+TA++ I+ EL  RL  L  EG+LLEAQRLEQR  YDLEML   G C 
Sbjct: 243 PAKHFVTPKDRLDTAVQAIRSELNERLDFLNAEGKLLEAQRLEQRTKYDLEMLGQVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L GR PG  P  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L ++
Sbjct: 303 GVENYARHLAGREPGSAPECLIDYFPDDWLLIVDESHVTCSQLQAMYNGDQARKKVLIDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+      T+ VSATPG+WELE     + +Q+IRPTG++DP VE
Sbjct: 363 GFRLPSAADNRPLKGEEFWTKARQTVFVSATPGNWELEVSGDEVAQQVIRPTGVLDPIVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI   A +  R+L+T LTKRMAEDLT+YL E ++RVRY+HSE+ ++E
Sbjct: 423 VRPTNGQVDDLLGEIRDRASKQQRVLVTTLTKRMAEDLTDYLAENDVRVRYLHSEIHSIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V  K +LY D +T S+  AI ET RRR  Q  +N+KH I P +  +K    I   L   
Sbjct: 543 HVEGKALLYGDNLTDSMAKAISETERRRSIQQAYNEKHGIVPTAAGKKASNSILSFLELS 602

Query: 741 AATTNISIDAQQLSLSKKKGKA-----------HLKSLRKQMHL----AADNLNFEEAAR 785
                   DA  + ++ K  +A            L  L  Q+ L    AA  L+FEEAA 
Sbjct: 603 RKLKTDGPDADLVKVASKAVEALEDDADGMTLDALPELIDQLELKMKDAAKKLDFEEAAN 662

Query: 786 IRDEIKRLK 794
           +RD IKRL+
Sbjct: 663 LRDRIKRLR 671


>gi|284044329|ref|YP_003394669.1| excinuclease ABC subunit B [Conexibacter woesei DSM 14684]
 gi|283948550|gb|ADB51294.1| excinuclease ABC, B subunit [Conexibacter woesei DSM 14684]
          Length = 678

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/659 (51%), Positives = 471/659 (71%), Gaps = 8/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+ DQP+AIA L +GI +R++   LLG TG+GKT TMA  IEA+QRPA+++A
Sbjct: 4   FRLDSTYAPTADQPSAIASLAEGIEARDRYMTLLGATGTGKTMTMAATIEAVQRPALIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF+ +FP NAVEYFVSYYDYYQPEAYVP  D YIEK+S+IN +I+R+RH
Sbjct: 64  HNKTLAAQLCNEFRTYFPDNAVEYFVSYYDYYQPEAYVPSRDLYIEKDSAINSEIERLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT SL  R D IVV+SVSCIYG+GS E Y + ++ L+ G +V++ E+L  LV  QY R 
Sbjct: 124 AATASLFARKDVIVVASVSCIYGLGSPEKYDRNMLILRRGATVDRDEVLRKLVSIQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D  + RG FRV G+++E+FP++ E  A+R ++FG+D+EE+ +F PLTG+ I  ++E   +
Sbjct: 184 DTVLQRGNFRVRGETLEVFPAYAES-AYRATLFGDDVEEVQQFDPLTGELIDEDLEFAAV 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SHY   +  +  A+  I  EL  R  +LE+EG+LLE+ RL QR  YD+EML   G C
Sbjct: 243 WPASHYNVDQEEIADAVTEIGRELNERCAQLEREGKLLESHRLRQRTQYDMEMLREMGFC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR L GR  G+ P  L ++ PED + F+DESH T+PQI GM+ GD  RK TL +
Sbjct: 303 SGIENYSRILDGRRKGDRPFCLIDFFPEDFVCFIDESHQTVPQIGGMFEGDRSRKQTLID 362

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP RFEE+  + P  + VSATPG +E       IVEQI+RPTG++DP +
Sbjct: 363 YGFRLPSALDNRPQRFEEFLSITPQVVFVSATPGEYERTHSPR-IVEQIVRPTGIIDPKI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R  R Q++D+ +EI +  ++  R L+T LTKRM+EDLT YL E   +VRY+HSEV T+
Sbjct: 422 DVRETRNQIDDLMNEIKVRVERDERTLVTTLTKRMSEDLTGYLLEMGFKVRYLHSEVDTI 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERI+IIR+LRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR  TSLIQTIGRAA
Sbjct: 482 ERIQIIRELRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRGATSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+  V++YAD  TK++++A++ET RRRE QL +N++H I P+S+ + I ++ + +  E
Sbjct: 542 RNVDGTVVMYADKETKAMRIALEETERRREIQLAYNREHGITPESIIKGISDIAEFLQAE 601

Query: 740 DAATTN----ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                     + +DA +   +  + +  +  + ++M  AA+ L FE AA +RDEIK L+
Sbjct: 602 SKVPKGRRRRLKLDAGK-QRTPAELEKAIIEIEEEMLRAAEELRFEYAATLRDEIKTLR 659


>gi|163846641|ref|YP_001634685.1| excinuclease ABC subunit B [Chloroflexus aurantiacus J-10-fl]
 gi|222524438|ref|YP_002568909.1| excinuclease ABC subunit B [Chloroflexus sp. Y-400-fl]
 gi|163667930|gb|ABY34296.1| excinuclease ABC, B subunit [Chloroflexus aurantiacus J-10-fl]
 gi|222448317|gb|ACM52583.1| excinuclease ABC, B subunit [Chloroflexus sp. Y-400-fl]
          Length = 664

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/664 (51%), Positives = 470/664 (70%), Gaps = 15/664 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  Y P+GDQP AI QL+ G+ +  + Q LLG TG+GKTF MA +   MQRP +V+A
Sbjct: 3   FRIEAPYQPTGDQPRAIEQLVAGLRAGYRHQTLLGATGTGKTFVMAHIFAQMQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L +QL++EF+ F P  AVE F+SYYD Y PEAYVP  D YIEKE+SINE+IDR+RH
Sbjct: 63  HNKTLVSQLWAEFREFLPDAAVEMFISYYDEYTPEAYVPSKDLYIEKEASINEEIDRLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++LL R D ++V+SVS I+G+GS   Y Q  V L++G+   + +L+  L+  Q++R+
Sbjct: 123 AATQALLSRRDVLIVASVSAIFGLGSPHDYGQEKVTLRVGEVRNRDKLMRQLIDLQFERK 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+++I P++ E  A RV  +G++IE I E  PLTG+ +     ++IY
Sbjct: 183 DMDFQRGTFRVRGDTLDIIPANAE-TAIRVEFWGDEIERIVELDPLTGEVLCKHAVVEIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT +  L  A+  I++EL  R+ ELE  G+LLEAQRL+QR  YD+EML   G C 
Sbjct: 242 PAKHFVTTKEKLQLAIASIQDELAERVRELEAAGKLLEAQRLKQRTLYDIEMLSEVGYCS 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR PG+ P TL +Y P+D L+F+DESH+T+PQ+ GMY GD  RK TL ++
Sbjct: 302 GIENYSRHLDGRAPGQTPWTLLDYFPDDFLIFIDESHITLPQLRGMYNGDRQRKQTLVDF 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       I VSATPG +E E+ + I VEQIIRPTGL+DP +E
Sbjct: 362 GFRLPSALDNRPLRFEEFEQHVYQVIYVSATPGPYEREKSEQI-VEQIIRPTGLLDPEIE 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+  EI    ++  R+L+T LTKRMAEDL +YL E  +R  Y+H+++ T+E
Sbjct: 421 VRPTRGQIDDLLGEIRRRVERKQRVLVTTLTKRMAEDLADYLKEMGVRTMYLHADIDTIE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS+TSLIQ IGRAAR
Sbjct: 481 RVEILRDLRLGVYDVVVGINLLREGLDLPEVSLVAILDADKEGYLRSETSLIQIIGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738
           ++  KVI+YADTIT+S++ AI ET RRR+ Q+ HN ++NI PQ + + + ++ D I  + 
Sbjct: 541 HIEGKVIMYADTITRSMEAAIRETQRRRDIQMAHNLRYNIKPQGIAKGVRDLTDRIRKMA 600

Query: 739 EDAA------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           E+        TT +++D     L + +    +K L KQM  AA  L FE+AA +RD+I  
Sbjct: 601 EERGEYVATPTTAVAVD-----LPRDEVLKLIKDLEKQMKQAAKELAFEKAAALRDQIVE 655

Query: 793 LKSS 796
           L+ +
Sbjct: 656 LRKT 659


>gi|256851463|ref|ZP_05556852.1| excinuclease ABC, B subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260660884|ref|ZP_05861799.1| excinuclease ABC, B subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282933463|ref|ZP_06338839.1| excinuclease ABC, B subunit [Lactobacillus jensenii 208-1]
 gi|297206278|ref|ZP_06923673.1| excision endonuclease subunit UvrB [Lactobacillus jensenii JV-V16]
 gi|256616525|gb|EEU21713.1| excinuclease ABC, B subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260548606|gb|EEX24581.1| excinuclease ABC, B subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281302394|gb|EFA94620.1| excinuclease ABC, B subunit [Lactobacillus jensenii 208-1]
 gi|297149404|gb|EFH29702.1| excision endonuclease subunit UvrB [Lactobacillus jensenii JV-V16]
          Length = 681

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/659 (51%), Positives = 463/659 (70%), Gaps = 6/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + P+GDQ  AI +L  G  +  K Q+L G TG+GKTFTMA +I  + +P +V++
Sbjct: 10  FDLVSKFKPAGDQEQAIDKLTAGFKAGAKEQILQGATGTGKTFTMANIIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT +L+ERND +VV+SVSCIYG+G  + Y+  ++ L  G   E+  LL  LV  QY R 
Sbjct: 130 RATSALMERNDVVVVASVSCIYGLGDPKEYAASVLSLHEGQEYERNVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A+RV  FG++I+ I E   LTG+ I   + I ++
Sbjct: 190 DIDFQRGRFRVRGDIVEIFPAGNSDHAFRVEFFGDEIDRIVEVDSLTGEVIGERDQISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I +E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNEEQMKQALKRISQEMDLQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  + GR  GEPP TL ++ P+D L+ +DESH T+P+I  MY GD  RK TL +Y
Sbjct: 310 GIENYSAPIEGRKAGEPPHTLLDFFPDDFLILIDESHATMPEIRAMYNGDRKRKETLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL +    +VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQILYVSATPGDYELNRTNK-VVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN   ++  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIQGQIDDLVGEINKRIERDERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+ DLR G FDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   LIQT+GRAAR
Sbjct: 489 RMQILHDLRKGDFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLIQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N +  VI+YAD IT S+++AIDET RRREKQ+  N++H I P+++ + I +VI    P+ 
Sbjct: 549 NSDGMVIMYADKITDSMKIAIDETRRRREKQIAFNEEHGITPKTIVKPIRDVISITKPVK 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            E    +   ++  +  L+KK+ +A +K+L  QM  AA  L+FE AA +RD I  L++S
Sbjct: 609 EEKEKESFADLNFDE--LTKKQKQAMIKNLTDQMQDAAKKLDFEAAANLRDAIMELQNS 665


>gi|226355146|ref|YP_002784886.1| excinuclease ABC subunit B [Deinococcus deserti VCD115]
 gi|226317136|gb|ACO45132.1| putative UvrABC system protein B (Excinuclease ABC, subunit B)
           [Deinococcus deserti VCD115]
          Length = 671

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/660 (51%), Positives = 463/660 (70%), Gaps = 16/660 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
             ++++ + PSGDQP AI  L+ G+ S  + Q LLG TG+GKT+TMAKVIE   RPA++M
Sbjct: 1   MLKVKSAFTPSGDQPTAIRSLVDGLDSGLRFQTLLGATGTGKTYTMAKVIEETGRPALIM 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNKIL AQL SEF+ FFP  AVE+F+SYYDYYQPEAYVP  D +IEK++++N++I+R+R
Sbjct: 61  APNKILTAQLASEFREFFPDAAVEFFISYYDYYQPEAYVPGKDLFIEKDAAVNQEIERLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HS TRSLL R D IVV+SVSCIYG+G  + Y+ + + LK GD+V + E+L  LV  QY+R
Sbjct: 121 HSTTRSLLTRRDTIVVASVSCIYGLGDPKEYTALNLILKKGDAVSRDEILGRLVNMQYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI ++ G FR  G+ IE++P++ E    R+ ++G+D+E IS  +PLTG ++ +++   +
Sbjct: 181 NDIEMMPGRFRAKGEMIEVWPAYDEQ-PLRIELWGDDVERISVVHPLTGDRLADLDATVV 239

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y   HYV+    +  A+  I++EL  RL   +  G+LLEAQRL++R  YDLEML+  G C
Sbjct: 240 YPAKHYVSSAGNIERAIGTIQQELDERLDYFKSVGKLLEAQRLKERTLYDLEMLKVLGYC 299

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR++ GR PG  P T+ +Y P+D + F+DESHVT+PQI GM  GD  RK TL +
Sbjct: 300 SGIENYSRHIDGRAPGATPYTMLDYFPDDFVTFIDESHVTVPQIGGMANGDRARKQTLVD 359

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS MDNRPL F+E+      T+ VSATPG +E E     + +QIIRPTGLVDPPV
Sbjct: 360 YGFRLPSAMDNRPLNFQEFMDKTGQTVFVSATPGPFEREVSDA-VSDQIIRPTGLVDPPV 418

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R    QVED+   I      G R L+T LTKRM+EDLTEYL E+ ++ RYMHS++ ++
Sbjct: 419 TVRPINGQVEDLLGRIRERTAIGERTLVTTLTKRMSEDLTEYLLEKGVKARYMHSDIDSV 478

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  IIRDLRLG +DVLVGINLLREGLD+PE  LVAILDADK GFLRS+ +L+QTIGRAA
Sbjct: 479 ERQVIIRDLRLGHYDVLVGINLLREGLDLPEVSLVAILDADKPGFLRSERALVQTIGRAA 538

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----DP 735
           RNVN +VILY DTIT ++Q A++ET RRREKQ  +N+ H I P +V + + +VI     P
Sbjct: 539 RNVNGEVILYGDTITPAMQFAMEETARRREKQTSYNEAHGITPTTVIKGVRDVIRGEEQP 598

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              E+ ++  +  D   L+       A L  L   M  A+++L+FE AA +RD+I+ +++
Sbjct: 599 ---EEISSATLGNDRDSLT-------AQLTDLELDMWQASEDLDFERAASLRDQIRAIEA 648


>gi|319957776|ref|YP_004169039.1| excinuclease ABC subunit b [Nitratifractor salsuginis DSM 16511]
 gi|319420180|gb|ADV47290.1| Excinuclease ABC subunit B [Nitratifractor salsuginis DSM 16511]
          Length = 657

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/660 (51%), Positives = 470/660 (71%), Gaps = 14/660 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q  Y P+GDQP AI +L   I +  + Q LLGVTGSGKT TMA++IE  QRP ++M 
Sbjct: 4   FKVQAPYQPAGDQPEAIEKLAASIEAGNRYQTLLGVTGSGKTHTMARIIEKTQRPTLIMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK+FFP+N VEYF+SYYDYYQPEAY+PR D +IEK+SS+N +++R+R 
Sbjct: 64  HNKTLAAQLYSEFKSFFPNNHVEYFISYYDYYQPEAYIPRQDLFIEKDSSVNAELERLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL  +D IV++SVS  YG+GS E Y  ++ ++ +G+   Q+ELL   V+  YKR 
Sbjct: 124 SATASLLSHDDVIVIASVSANYGLGSPEEYRSIVQKIVVGEEYNQRELLLKFVEMGYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV G++I+I+P++ E++A+R+  FG+++E I  F  LTG+K+  ++   +Y
Sbjct: 184 DDFFDRGDFRVSGEAIDIYPAYSEELAYRIEFFGDEVEAIIGFDALTGEKVHELKEFTLY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           + + ++  R  +  A+K I+EEL  RL   E+EGR++E  RL+QR  +DLEMLETTG C+
Sbjct: 244 SANQFIVGREKMVRAIKSIEEELGERLKFYEREGRMVEYNRLKQRTEFDLEMLETTGVCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTL---FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENYSR+LTG+ PGE P +L   FE +  D L+ VDESHV++PQ  GMY GD  RK  L
Sbjct: 304 GIENYSRHLTGKKPGETPYSLLDYFEAMHRDYLVMVDESHVSLPQFRGMYAGDRSRKEVL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL+FEE+    P  + VSATPG WE E    +I EQ++RPTGL+DP
Sbjct: 364 VEYGFRLPSALDNRPLKFEEYIDKAPAYLFVSATPGEWETEHS-AVIAEQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+  +  QV  ++D I     +G R+L+TVLTK+MAE+LT Y  +  +RV+YMHS++ 
Sbjct: 423 EIEVIDSENQVAHLHDRIKEVTTRGERVLVTVLTKKMAEELTTYYNDLGLRVKYMHSDLD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER +IIR LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+T+LIQT GR
Sbjct: 483 AIERNQIIRSLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETALIQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI---MEVID 734
           AARNV+ KV++YA  IT S+Q  I+ T  RR+KQ+E+N+KH I P++   ++   ++V +
Sbjct: 543 AARNVHGKVLMYAKRITPSMQACIETTRARRQKQIEYNQKHGITPKTTVRELDTDLKVAE 602

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           P  L +         ++   + K + +  +K L+ +M  AA  L+FEEAAR+RDEI ++K
Sbjct: 603 PGELYNR-------HSKTDKMPKAERQRIVKELKAKMLSAAKKLDFEEAARLRDEIAKIK 655


>gi|158338625|ref|YP_001519802.1| excinuclease ABC subunit B [Acaryochloris marina MBIC11017]
 gi|189037950|sp|B0CE09|UVRB_ACAM1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|158308866|gb|ABW30483.1| excinuclease ABC, B subunit [Acaryochloris marina MBIC11017]
          Length = 668

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/668 (53%), Positives = 453/668 (67%), Gaps = 18/668 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F +   + P GDQP AI +L   + S    Q LLG TG+GKTFTMAKVIE + +P +
Sbjct: 1   MTAFDLHAPFVPKGDQPQAIEKLTTHLQSGHSRQTLLGATGTGKTFTMAKVIEEIGKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL +E ++FFP+NAVEYF+SYYDYYQPEAY+P TDT+IEK +SINE+ID 
Sbjct: 61  ILAHNKTLAAQLCNEIRSFFPNNAVEYFISYYDYYQPEAYIPVTDTFIEKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  + LK+G  V+Q++LL +L   QY
Sbjct: 121 LRHSATRSLFERQDVIVVASISCIYGLGIPAEYLKASIPLKVGAEVDQRQLLRNLAAVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ ++++E +
Sbjct: 181 TRNDVDLGRGRFRVKGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYVDPVTGETLQSLEGL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+VTP   L  A++ I  E   ++  LE  G+LLEAQRL QR  YDLEML   G
Sbjct: 240 NVYPARHFVTPTERLEMAVEAIDAERTAQVEHLEGAGKLLEAQRLNQRTRYDLEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  GEPP  L +Y P+D LL VDESHVT+PQI GMY GD  RK  L
Sbjct: 300 YCNGVENYSRHLAGRQAGEPPECLVDYFPKDWLLIVDESHVTVPQIRGMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+       + VSATPG WE+E  +  +VEQ+IRPTG+VDP
Sbjct: 360 IDHGFRLPSAADNRPLKSEEFWQKVGQCVFVSATPGLWEIELSENRVVEQVIRPTGVVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    QV+D+  EI     +  R L+T LTKRMAEDLTEY  ER +RVRY+HSE+ 
Sbjct: 420 EIFVRPTTGQVDDLLAEIQERVGRQERTLITTLTKRMAEDLTEYFEERGVRVRYLHSEIN 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            ++RIEI+RDLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 AIQRIEILRDLREGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V  + ILYAD +T S++ AI ET RRR+ QL +NKKH I PQ VK+     I   L
Sbjct: 540 AARHVRGQAILYADNLTDSMEKAISETERRRKIQLAYNKKHGITPQPVKKGSDNAILAFL 599

Query: 738 ----------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                     LEDA         Q   L  +     +  L  QM  AA NL FEEAA+ R
Sbjct: 600 EVSRRLNTQELEDAYE-------QADDLPLESVPELITQLEAQMKEAAKNLEFEEAAKYR 652

Query: 788 DEIKRLKS 795
           D IK L+S
Sbjct: 653 DRIKNLRS 660


>gi|319789529|ref|YP_004151162.1| excinuclease ABC, B subunit [Thermovibrio ammonificans HB-1]
 gi|317114031|gb|ADU96521.1| excinuclease ABC, B subunit [Thermovibrio ammonificans HB-1]
          Length = 663

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/658 (52%), Positives = 471/658 (71%), Gaps = 9/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P GDQP AI  L +G+    K Q LLG+TGSGKT+T+AKVIE +Q+P +V++
Sbjct: 5   FKVVSPFKPRGDQPKAIKALSEGVKEGLKYQTLLGITGSGKTYTIAKVIEEVQKPTLVIS 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK+LAAQLY E KNFFP NAVEYF+SYYDYYQPEAY+P  D YIEK+ SIN  I+RMRH
Sbjct: 65  HNKVLAAQLYHELKNFFPENAVEYFISYYDYYQPEAYIPSRDLYIEKDCSINPVIERMRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D IVV+SVSCIYG+GS E Y ++ ++ ++G+ VE++E++  LV   Y+R 
Sbjct: 125 SATVSLLTRPDTIVVASVSCIYGLGSPEHYKKLALRFEVGEIVEREEVIRKLVSLGYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  +  G F+V GD I+I+P+  E+   RV +FG++++ I+       + ++ + T  +Y
Sbjct: 185 DFEVRPGIFKVRGDVIDIYPADTEEHFIRVELFGDEVDSITMLTYFNHETVKELNTYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY TP   +  A++ I+EEL+ RL     +G+ LEA+RLEQR  YD+E+L   G C+
Sbjct: 245 PASHYATPHSRIVRAVRSIEEELQERLQYFLSQGKELEARRLEQRTRYDMELLLEIGHCK 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR PGEPP TL +Y P+D L+ VDESHVTIPQI  MYRGD  RK  L E+
Sbjct: 305 GIENYSRHLEGRKPGEPPFTLLDYFPDDFLVIVDESHVTIPQIKAMYRGDRARKFNLVEH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+    P  I VSATPG +ELE  +  +VEQIIRPTGL+DP VE
Sbjct: 365 GFRLPSAYDNRPLTFEEFLKRVPQAIFVSATPGPFELEVSER-VVEQIIRPTGLLDPEVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++ +  +I    ++  R+L+T LTK+ AE+LT YL E+ ++ +Y+HSE+ ++E
Sbjct: 424 VRPTQGQIDYLLSQIRERVKRNERVLITTLTKKSAEELTNYLLEKGVKAKYLHSEIDSVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIR LR G+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS TSLIQT+GRAAR
Sbjct: 484 RVEIIRGLRQGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN KVIL+AD +T S++ AI+ET RRR+ Q  +N++HNI PQ+VK +    ++P +LED
Sbjct: 544 NVNGKVILFADRVTPSMKRAIEETQRRRKIQEAYNREHNITPQTVKRE----LEPSILED 599

Query: 741 AATTNIS----IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A  + +        +++  ++++    ++ L K+M  AA N  FE AA +RD+I+ L+
Sbjct: 600 AGLSALERIKRKGIEEVPKNEEELFELIEKLEKEMKEAAKNWEFERAAELRDKIRELR 657


>gi|294790750|ref|ZP_06755908.1| excinuclease ABC subunit B [Scardovia inopinata F0304]
 gi|294458647|gb|EFG27000.1| excinuclease ABC subunit B [Scardovia inopinata F0304]
          Length = 711

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/685 (52%), Positives = 473/685 (69%), Gaps = 35/685 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AI +L + ++S E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 22  FVVKSPYKPSGDQPQAIEELAERLNSGESDVVLMGATGTGKTATTAWLIEKLQRPTLILE 81

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAYVP+TDT+IEK+SSIN+ ++R+RH
Sbjct: 82  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYVPQTDTFIEKDSSINDDVERLRH 141

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R D +VVS+VSCIYG+G+ E Y+  ++ L  GD + + +LL + VK QYKR 
Sbjct: 142 AATANLLTRRDTVVVSTVSCIYGLGTPEEYASQMLFLHEGDEINRDDLLRTFVKMQYKRN 201

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I +V +I I+
Sbjct: 202 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDSISTLHPLTGDLIDHVTSIHIF 260

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     LN A+K IKEE+  R+ E +K+ +LLEAQRLE R TYDLEML   G+C 
Sbjct: 261 PATHYVAGPDRLNRALKTIKEEMDQRVAEFKKQNKLLEAQRLEMRTTYDLEMLSQIGTCP 320

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR PG PP TL ++ P+D LL +DESH T+PQI  MY GD  RK TL EY
Sbjct: 321 GVENYSRHFDGRQPGSPPHTLLDFFPDDFLLVIDESHQTVPQIGAMYEGDASRKRTLVEY 380

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+++E+      T+ +SATPG +EL    G +VEQIIRPTGLVDP VE
Sbjct: 381 GFRLPSAMDNRPLKWDEFEQHIGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLVDPRVE 439

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  R+L+T LTK+MAEDLT+YL +R I+V Y+HS+V TL 
Sbjct: 440 VRPVEGQIDDLLGEIKDRVAKNERVLVTTLTKKMAEDLTDYLLDREIKVEYLHSDVDTLR 499

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LR G  DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 500 RVELLRQLREGTIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 559

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD  T+++  AI ET RRRE Q+ +N KH+++PQ + +KI +V D +  ED
Sbjct: 560 NVSGTVIMYADKETEAMSQAITETNRRREVQIAYNTKHHVDPQPLIKKISDVNDMLAKED 619

Query: 741 AATTNISIDAQQLSLSKKKGKAHL-------------------------------KSLRK 769
             T  + +D    + S K G +HL                               + L  
Sbjct: 620 VDTQTL-LDTGYRN-SGKAGNSHLGVPKLDRDKAFKNRKQLIDAGLPAQDLADLIRQLSD 677

Query: 770 QMHLAADNLNFEEAARIRDEIKRLK 794
           QMH AA+ L FE AAR+RDEI+ LK
Sbjct: 678 QMHTAAEQLQFELAARLRDEIRDLK 702


>gi|332882227|ref|ZP_08449857.1| excinuclease ABC, B subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332679850|gb|EGJ52817.1| excinuclease ABC, B subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 666

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/659 (51%), Positives = 468/659 (71%), Gaps = 7/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ P GDQP AI QL++GI   +K Q+LLGVTGSGKTFT+A V+E +QRP +V+A
Sbjct: 3   FSIVSDFAPMGDQPQAIQQLVEGIEKDDKYQVLLGVTGSGKTFTIANVVEKIQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P T TYIEK+ SIN++I+++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYIPTTGTYIEKDLSINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T +LL  R D +VV+SVSC+YGIG+   + + ++ +K GD + + +L+  LV+  Y R
Sbjct: 123 STTSALLSGRRDVLVVASVSCLYGIGNPVEFQKNVITIKRGDILPRTKLMHRLVQSLYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                  G FR+ GD +++FP + +D A+R+  FG++IEEI +F P T   + + E++ I
Sbjct: 183 TTADFRHGNFRIKGDVLDVFPGY-DDNAFRIHFFGDEIEEIEQFDPTTNHILDHYESLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+++L  ++   E  G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDILQKAIWNIQQDLMKQVEFFEASGKALEAKRLKERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR  G  P  L +Y P+D L+ +DESHVT+PQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREAGTRPFCLIDYFPDDFLMVIDESHVTMPQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL++ QG+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQKAQGVYVEQVIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R ++ Q++D+ +EI +  ++  RIL+T LTKRMAE+LT+YL    +R RY+HS+V TL
Sbjct: 422 EVRPSQNQIDDLVEEIQVRVEKDERILVTTLTKRMAEELTKYLTRIGVRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--DPIL 737
           RNVN K I+YAD IT S+Q  ID+T  RREKQ+ +NK H I PQ +++KI   +   PI 
Sbjct: 542 RNVNGKAIMYADKITDSMQRTIDDTNYRREKQMNYNKAHGITPQPLQKKIENSLSKSPIT 601

Query: 738 ---LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
               + +     + +AQ + ++ K+ +  +K  RK M  AA +L+F +AA+ RDEI RL
Sbjct: 602 EFHYDPSFAHRQAAEAQAVYMTAKEIEKKIKETRKLMEAAAKDLDFLKAAQYRDEIARL 660


>gi|148272932|ref|YP_001222493.1| excinuclease ABC subunit B [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|189037957|sp|A5CRU3|UVRB_CLAM3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|147830862|emb|CAN01806.1| putative excinuclease ABC subunit B [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 688

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/675 (49%), Positives = 476/675 (70%), Gaps = 18/675 (2%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           ++ +  F++ +DY PSGDQP AIA+L   +++ E   +LLG TG+GK+ T A +IE +QR
Sbjct: 4   TRSVRPFKVVSDYSPSGDQPTAIAELAGRVNAGEPDVVLLGATGTGKSATAAWLIEKVQR 63

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++A NK LAAQL +EF+   P NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SS+N +
Sbjct: 64  PTLILAHNKTLAAQLATEFRELMPDNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSVNAE 123

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++R+RHS T SLL R D +VVS+VSCIYG+G  E Y   +V L++G  +++  L+   V 
Sbjct: 124 VERLRHSTTNSLLSRRDVVVVSTVSCIYGLGQPEQYMNAMVALQVGMQIDRDTLIRKFVS 183

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY+R D+   RG FRV GD+IEI P + E++A R+ MFG++IE + + +PLTG  +R +
Sbjct: 184 MQYQRNDVDFSRGNFRVRGDTIEIIPMY-EELAIRIEMFGDEIEALYQLHPLTGDVVRKM 242

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           +++ ++  SHYV     +  A+  I++EL+ RL  LE+EG+LLEAQRL  R  +D+EM++
Sbjct: 243 DSVSVFPGSHYVAETEVMRRAIGTIQQELEERLTVLEREGKLLEAQRLRMRTNFDIEMMQ 302

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSR++ GR+ GE P  L +Y P+D L+ +DESHVT+PQI  M+ GD  RK
Sbjct: 303 QIGFCSGIENYSRHIDGRDAGEAPHCLLDYFPDDFLVVIDESHVTVPQIGAMFEGDSSRK 362

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL E+GFRLPS +DNRPL++ E+    P T+ +SATPG +EL    G +VEQIIRPTGL
Sbjct: 363 RTLVEHGFRLPSALDNRPLKWNEFTERVPQTVYMSATPGKYELGMGDG-VVEQIIRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP + ++  + Q++D+ ++I +  ++  RIL+T LTK+MAE+LT+Y  E  +RVRY+HS
Sbjct: 422 IDPAIVVKPTKGQIDDLLEQIRIRVEKDERILVTTLTKKMAEELTDYFAEAGVRVRYLHS 481

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +V TL R+E++ +LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQT
Sbjct: 482 DVDTLRRVELLSELRAGVYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQT 541

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARNV+ +V +YAD +T S++ AI+ET RRREKQ+ +N +H I+P  ++++I ++ +
Sbjct: 542 IGRAARNVSGEVHMYADVLTDSMKRAIEETDRRREKQVAYNTEHGIDPTPLRKRIADITE 601

Query: 735 PILLEDAATTNISIDAQQLSLS------KKKGKAH---------LKSLRKQMHLAADNLN 779
            IL  +   T   ++ +           +++GKA          +  L  QM  AA  L 
Sbjct: 602 -ILAREGEDTKKMLEGRGGGKRSPTPNLRREGKAAAGANELETIISDLNDQMLQAAGELK 660

Query: 780 FEEAARIRDEIKRLK 794
           FE AAR+RDE+  LK
Sbjct: 661 FELAARLRDELGDLK 675


>gi|312890280|ref|ZP_07749818.1| excinuclease ABC, B subunit [Mucilaginibacter paludis DSM 18603]
 gi|311297244|gb|EFQ74375.1| excinuclease ABC, B subunit [Mucilaginibacter paludis DSM 18603]
          Length = 675

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/667 (51%), Positives = 474/667 (71%), Gaps = 15/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL++GI++ +  Q LLGVTGSGKTFT+A +IE  Q+P ++++
Sbjct: 3   FKITSQYKPTGDQPEAIRQLVQGINNGDNYQTLLGVTGSGKTFTVANIIEQTQKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP N+V YFVSYYDYYQPEA++P ++TYIEK+  INE+I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPENSVNYFVSYYDYYQPEAFIPSSNTYIEKDLQINEEIEKLRI 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             T SL+  R D IVVSS+SCIYG+G+ E ++  + +  +G  V +   L  LV+  Y R
Sbjct: 123 RTTSSLMSGRRDIIVVSSISCIYGMGNPEDFANSVFKFAVGTRVSRNAFLHRLVEILYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RG FRV GD ++I+P+++ D A+RVS FG+DIEE+S F P TG+ I  ++ + +
Sbjct: 183 TTADFRRGNFRVKGDIVDIWPANM-DYAYRVSFFGDDIEELSTFDPTTGKTIEKMQNMVV 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + YV PR     ++  I+EEL+ R  +   +GR LEA+RLE+R+ YDLEM+   G C
Sbjct: 242 YPANLYVAPRERFQQSVWEIQEELETRKKQFIDDGRFLEAKRLEERVNYDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GR PG  P  L +Y P+D L+ +DESHVT+PQI  MY GD  RK +L E
Sbjct: 302 SGIENYSRFFDGRKPGARPFCLLDYFPDDYLMVIDESHVTVPQIRAMYGGDRSRKISLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL F+E+  L P T+ VSATPG +ELE+  G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAALDNRPLNFQEFERLAPQTVYVSATPGDFELEKSGGVVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    QV+D+ DE++   + G RIL+T LTKRMAE+L +Y+ +  I+ RY+HSEVKTL
Sbjct: 422 EVRPVINQVDDLLDEVDKTIKLGDRILVTTLTKRMAEELAKYMDKLGIKCRYIHSEVKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EI+R LRLG+FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 482 QRVEILRGLRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIME---VI 733
           RN   +VI+YAD IT S+++ +DET RRR+ Q+ +N +H I P +V   +E I+E   V+
Sbjct: 542 RNDRGRVIMYADKITDSMRITMDETNRRRDIQIAYNLEHGITPITVGKSREAIIEQTSVV 601

Query: 734 D------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           D         +E+ A T ++ D     +SK + K  +++ +K+M  AA  ++F  AA++R
Sbjct: 602 DFKGGVQYAYVENTAAT-LAADPIVQYMSKPELKKSIENTKKEMLAAAKGMDFLLAAKLR 660

Query: 788 DEIKRLK 794
           DE+  L+
Sbjct: 661 DEMFALE 667


>gi|17228627|ref|NP_485175.1| excinuclease ABC subunit B [Nostoc sp. PCC 7120]
 gi|20532282|sp|Q8YXS9|UVRB_ANASP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|17130478|dbj|BAB73089.1| excinuclease ABC subunit B [Nostoc sp. PCC 7120]
          Length = 665

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/664 (52%), Positives = 458/664 (68%), Gaps = 12/664 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F +Q  + P+GDQP+AIAQL+  I    + Q LLG TG+GKTF++A VIE + RP +
Sbjct: 1   MTEFGLQAPFSPTGDQPSAIAQLVASIEGGNRYQTLLGATGTGKTFSIAAVIEKIGRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK ++IN++ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPNNAVEYFVSYYDYYQPEAYIPVTDTYIEKTAAINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  + L+IG  V Q+E+L  L   QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPAEYLKAAIPLQIGMEVNQREILRDLASVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ I +++ +
Sbjct: 181 SRNDVEMGRGRFRVRGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEIINSLQAV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP   L  A + I  ELK R  ELE+ G+L+EAQR++QR  YDLEML   G
Sbjct: 240 NIYPARHFVTPEERLEVACEDIAYELKQRKAELEETGKLVEAQRIDQRTRYDLEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  GEPP +L +Y P+D LL +DESHVT+PQI GMY GD  RK  L
Sbjct: 300 YCNGVENYSRHLAGRQAGEPPESLIDYFPKDWLLVIDESHVTVPQIRGMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+ EE+       I VSATPG+WELE  +  IVEQ+IRPTG++DP
Sbjct: 360 IEHGFRLPSAADNRPLKAEEFWQKVNQCIFVSATPGNWELEISENRIVEQVIRPTGVIDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    Q++D+  EI        R+L+T LTKRMAEDLTEYL E  ++VRY+HSE+ 
Sbjct: 420 EISVRPTEGQIDDLLGEIKDRIDLHERVLITTLTKRMAEDLTEYLQEHGVKVRYLHSEIN 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           +++RIEI++DLR G FDVLVG+NLLREGLD+PE  LVAI+DADKEGFLR++ SLIQTIGR
Sbjct: 480 SIQRIEILQDLRQGSFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK-------IM 730
           AAR++  + ILYAD +T S+  AI+ET RRR  Q+ +NK H I PQ + +K        +
Sbjct: 540 AARHIRGQAILYADNMTDSMIKAIEETDRRRGIQVAYNKLHGITPQPIVKKSSNAILSFL 599

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           EV   +   D       ID     L  ++    +  L  QM  A+  L FEEAA++RD I
Sbjct: 600 EVSRRLNATDLKVVEEHID----ELPLEEIPNLIDKLEAQMKEASKKLEFEEAAKLRDRI 655

Query: 791 KRLK 794
           K+L+
Sbjct: 656 KQLR 659


>gi|225412398|ref|ZP_03761587.1| hypothetical protein CLOSTASPAR_05621 [Clostridium asparagiforme
           DSM 15981]
 gi|225042079|gb|EEG52325.1| hypothetical protein CLOSTASPAR_05621 [Clostridium asparagiforme
           DSM 15981]
          Length = 660

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/655 (52%), Positives = 467/655 (71%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI  L+KG     + + LLGVTGSGKTFTMA VI+ +Q+P +++A
Sbjct: 3   FKLHSEYQPTGDQPQAIEALVKGFREGNQFETLLGVTGSGKTFTMANVIQQLQKPTLIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH
Sbjct: 63  HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS   Y  M++ L+ G   ++ E++  L+  QY+R 
Sbjct: 123 SATAALSERSDVIIVASVSCIYGLGSPIDYKSMVISLRPGMEKDRDEVIHKLIDIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGTFRV GD +EI+P++ +  A+RV  FG+++E I+    LT +    +  + I+
Sbjct: 183 EMDFKRGTFRVRGDVLEIYPAYSDGEAYRVEFFGDEVERIASIDTLTMEVKAQLGHVAIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +  A + I  E+K R+   + E +LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 243 PASHYVVPKEKMMEATENILAEMKERVAFFKSEDKLLEAQRIAERTNFDVEMMRETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PGEPP TL +Y PED L+ VDESH+T+PQ+ GMY GD  RK+TL E+
Sbjct: 303 GIENYSRHLTGSAPGEPPCTLIDYFPEDFLIIVDESHITLPQVRGMYAGDRSRKSTLVEF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATP  +E +  + + VEQIIRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLNFSEFESKIDQMMFVSATPNVYERDH-ELLRVEQIIRPTGLLDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N       ++L+T LTKRMAEDLT+Y+ +  IRV+Y+HS++ TLE
Sbjct: 422 VRPVEGQIDDLVSEVNREVAGRHKVLITTLTKRMAEDLTDYMRDVGIRVKYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+R+  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQT+GRAAR
Sbjct: 482 RAEIIRDMRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTVGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S+++AI+ET RRR+ Q E+N+ H I P ++K+ +    D I +  
Sbjct: 542 NSEGHVIMYADKITDSMRVAIEETNRRRKIQQEYNEVHGITPTTIKKAVR---DLIAISK 598

Query: 741 AAT-TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A T ++        S+ +K+ K   K L K+M  AA  LNFE+AA++RD +  +K
Sbjct: 599 AVTDSDDRFKKDPESMDEKELKKLAKELEKKMRQAAVELNFEQAAKLRDRMLEVK 653


>gi|319440333|ref|ZP_07989489.1| excinuclease ABC subunit B [Corynebacterium variabile DSM 44702]
          Length = 721

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/684 (51%), Positives = 475/684 (69%), Gaps = 31/684 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQPAAI +L + ++  E+  +L+G TG+GK+ T A +IE  QRP +VMA
Sbjct: 28  FEVISEYEPAGDQPAAIKELDERLNRGERDIVLMGATGTGKSATAAWLIEKQQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E ++  P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 88  PNKTLAAQLANELRSLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VVSSVSCIYG+G+ +SY    V LK+G+ VE+   L  LV  QY R 
Sbjct: 148 SATSNLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLKVGEEVERDRFLRLLVDIQYDRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD++++ P++ E++A RV  FG++I+ +   +PLTG  IR VE I+I+
Sbjct: 208 DVSFTRGAFRVKGDTVDVIPAY-EELAVRVEFFGDEIDSLFYIHPLTGDVIREVEEIRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  AM  I++EL+ R+ +LE  G+LLEAQRL  R  YDLEM++  G C 
Sbjct: 267 PATHYVAGPERMEKAMADIRDELEHRVADLENRGKLLEAQRLRMRTEYDLEMIQQVGYCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++  R  G  P TL +Y P+D L  +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 327 GIENYSRHIDQRESGSAPATLIDYFPDDYLTIIDESHVTVPQIGGMFEGDMSRKRNLVDF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL +EE++  +   + +SATPG++E+    G  VEQ+IRPTGLVDP VE
Sbjct: 387 GFRLPSALDNRPLTWEEFDDRKGQCVYMSATPGNYEIAAAGGEFVEQVIRPTGLVDPKVE 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ ++I    ++  R+L+T LTKRMAEDLT+YL E  ++VRYMHS++ TL+
Sbjct: 447 VRPTDGQIDDLIEQIRQRVEKKERVLVTTLTKRMAEDLTDYLLEHGVKVRYMHSDIDTLK 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           NV+ +VI+YAD IT S+Q AIDET RRR KQ+ +N +H I+PQ +++KI +++D +    
Sbjct: 567 NVSGEVIMYADKITDSMQYAIDETERRRAKQIAYNTEHGIDPQPLRKKIADILDQVYENR 626

Query: 738 ----LEDAAT------------TNISIDAQQLSLSKKKGKAH-----------LKSLRKQ 770
                +D AT             ++ I A    +S   G+             +  L  Q
Sbjct: 627 GEDGPDDGATRMDGAAGSTGFGADVDIAAGPRGVSAVSGRDAGNLARPELEKLIADLTSQ 686

Query: 771 MHLAADNLNFEEAARIRDEIKRLK 794
           M  AA  L FE A R+RDEI  LK
Sbjct: 687 MQDAARALKFELAGRLRDEIADLK 710


>gi|182439351|ref|YP_001827070.1| excinuclease ABC subunit B [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326780007|ref|ZP_08239272.1| UvrABC system protein B [Streptomyces cf. griseus XylebKG-1]
 gi|178467867|dbj|BAG22387.1| putative excinuclease ABC subunit B [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326660340|gb|EGE45186.1| UvrABC system protein B [Streptomyces cf. griseus XylebKG-1]
          Length = 709

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/692 (51%), Positives = 478/692 (69%), Gaps = 46/692 (6%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQPAAIA+L + I + EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 14  FEVVSPYQPSGDQPAAIAELERRIRADEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE+++R+RH
Sbjct: 74  PNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ + Y   +VQLK+G+ +++ +LL   V+ QY R 
Sbjct: 134 SATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVQLKVGEEIDRDQLLRRFVEMQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ I    T+ ++
Sbjct: 194 DLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIENLSTLHPLTGEIISEDPTVHVF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I+ EL+ RL ELEK+G++LEAQRL  R TYD+EML   G+C 
Sbjct: 253 PASHYVAGPERMEKAVGGIERELEERLAELEKQGKMLEAQRLRMRTTYDIEMLRQIGTCS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS +   R PG  P TL +Y P+D LL +DESHVT+PQI  MY GD  RK TL ++
Sbjct: 313 GVENYSMHFDDRAPGTAPNTLLDYFPDDFLLVLDESHVTVPQIGAMYEGDASRKRTLVDH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++EE+      T+ +SATPG +EL +  G  VEQIIRPTGLVDP V 
Sbjct: 373 GFRLPSAMDNRPLKWEEFLKRIDQTVYLSATPGKYELSRGDG-FVEQIIRPTGLVDPEVV 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+  EI    ++  R+L+T LTK+M+EDLT+Y  E  I+VRY+HS+V TL 
Sbjct: 432 VKPTEGQIDDLVHEIRERVERDERVLVTTLTKKMSEDLTDYFLELGIQVRYLHSDVDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADK+GFLRS TSLIQTIGRAAR
Sbjct: 492 RIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT ++  AIDET RRREKQ+ +N +  I+PQ +++KI +++  I  E+
Sbjct: 552 NVSGQVHMYADKITPAMAQAIDETNRRREKQIAYNTERGIDPQPLRKKINDIVATIAREE 611

Query: 741 AATTNISIDAQQLSLSKKKGK--------------------------------------A 762
             T       Q L    ++GK                                       
Sbjct: 612 VDT------EQLLGTGYRQGKETKAPVPALGSKAAKGGAKGKAAKPGAVVGDRPATELAG 665

Query: 763 HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            ++ + ++M  AA +L FE AAR+RDE+  LK
Sbjct: 666 IIEEMTERMRAAAADLQFEVAARLRDEVGELK 697


>gi|313885111|ref|ZP_07818863.1| excinuclease ABC, B subunit [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619802|gb|EFR31239.1| excinuclease ABC, B subunit [Eremococcus coleocola ACS-139-V-Col8]
          Length = 664

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/665 (52%), Positives = 461/665 (69%), Gaps = 14/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++  Y  SGDQP AIA L+KG+   ++ Q+LLG TG+GKTFT+A VI+ + +P +V+A
Sbjct: 4   FNLKAPYQASGDQPKAIADLVKGLKEGKRDQILLGATGTGKTFTIANVIQEINKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE   FFP NAVEYFVSYYDYYQPEAYVP +D+YIEKE+SIN++ID++RH
Sbjct: 64  HNKTLAGQLYSELLEFFPDNAVEYFVSYYDYYQPEAYVPSSDSYIEKEASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA+ +LLER D IVV+SVSCIYG+   E Y   ++ L+ G  + +  +L+ LV+ QY R 
Sbjct: 124 SASSALLERRDVIVVASVSCIYGLVDPEMYRDQVLSLREGQEISRAYVLNRLVEMQYVRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD +EIF +  +    RV  FG++I+ I E   +TG+    ++   +Y
Sbjct: 184 DYDFQRGTFRVRGDVVEIFIASHDSSVLRVEWFGDEIDRIREVDVMTGEIKSELKHFPVY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+V  +     A++ I+ EL+ RL EL KE +LLEAQRLEQR  YD+EML   G C 
Sbjct: 244 PATHFVANQEQTLRAVETIRAELEERLAELNKEHKLLEAQRLEQRTNYDIEMLLEMGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG+ P TL ++ P+D L+  DESH+T+PQI GMY GD  RK  L +Y
Sbjct: 304 GIENYSRHMDGRAPGQAPFTLLDFFPDDYLIVADESHITLPQIRGMYNGDRARKQQLIDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       I VSATPG +EL       VEQIIRPTGL+DP +E
Sbjct: 364 GFRLPSALDNRPLRLEEFEKKVNQMIYVSATPGPYELNLTDNQYVEQIIRPTGLLDPVIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +G R+ +T LTK+M+EDLT+YL E + +V+Y+HS++KTLE
Sbjct: 424 VRPIKGQMDDIVSEINETISRGDRVFITTLTKKMSEDLTDYLKELDFKVKYLHSDIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 484 RTEIIRDLRLGIFDVLVGINLLREGLDVPEVSLVMILDADKEGFLRSERSLVQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + KVI+YAD IT S++ A+DET RRR+ Q+ +N+ H I PQ++K+++ ++I       
Sbjct: 544 NDHGKVIMYADAITDSMRKAMDETERRRKIQMAYNEAHGITPQTIKKEVRDLI------- 596

Query: 741 AATTNISIDAQQ-------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             +  +S D Q+        SLS+ + +  L  L  +M   A  +NFE AA +RD I  L
Sbjct: 597 KISKEVSSDEQEENILQQFKSLSRVQREEELDRLEMEMRQHAKAMNFEAAAELRDIIMEL 656

Query: 794 KSSPY 798
           K+  Y
Sbjct: 657 KAVFY 661


>gi|310828631|ref|YP_003960988.1| excinuclease ABC subunit B [Eubacterium limosum KIST612]
 gi|308740365|gb|ADO38025.1| excinuclease ABC subunit B [Eubacterium limosum KIST612]
          Length = 653

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/657 (52%), Positives = 457/657 (69%), Gaps = 9/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQ  AI +L  GI    K Q LLGVTGSGKT+TMAKVIEA+Q+P +++A
Sbjct: 4   FKVVSDYEPKGDQEKAIRELADGIDKGMKFQTLLGVTGSGKTYTMAKVIEAVQKPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF++FFP NAVEYFVSYYDYYQPEAYVP +D YIEK+SSIN++ID+MRH
Sbjct: 64  HNKTLAAQLANEFRSFFPENAVEYFVSYYDYYQPEAYVPHSDLYIEKDSSINDEIDKMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IVV+SVSCIYG+GS   Y  +++ L+ G   ++  ++  LV  QY R 
Sbjct: 124 SATAALFERRDVIVVASVSCIYGLGSPIDYENLVLSLRPGMEKDRDAVIRKLVDIQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   R  FRV GD +EI+P+     A R+  FG++I+ I+E   +TG+    +  + I+
Sbjct: 184 DIAFERNNFRVRGDILEIYPAASSGKAVRLEFFGDEIDRITEIDTITGEITGELSHVSIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T    L+ A+K I++EL  R        +L+EAQR+ QR  YDLEML+  G C 
Sbjct: 244 PASHYTTTPEKLDVAIKGIRDELADRYDYFTGHNQLVEAQRILQRTNYDLEMLKEMGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+RY+ G  PG PP TL +Y P+D L+F DESHV+IPQI GM  GD  RK  L +Y
Sbjct: 304 GIENYTRYINGSPPGAPPYTLIDYFPKDFLIFADESHVSIPQIGGMSSGDRARKQNLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       +  SATP  +E E  +   VEQIIRPTGL+DP + 
Sbjct: 364 GFRLPSAYDNRPLNFEEFEGKINQIVFTSATPSKYEKEHSEQ-TVEQIIRPTGLIDPEIF 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +G R+L+T LTK+MAEDLT+Y  E  IRV Y+HS++ T+E
Sbjct: 423 VRPIKGQIDDLMSEINETVSKGNRVLVTTLTKKMAEDLTQYFKENGIRVNYLHSDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +I+++LR+G+FDVLVGINLLREGLD+PE GLVAILDADKEG+LRS+TSLIQTIGRAAR
Sbjct: 483 RTKILKELRMGEFDVLVGINLLREGLDLPEVGLVAILDADKEGYLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           NV  KV++YAD IT+S+  AI ET RRR+ Q E N+ H I PQSV ++I + ++   + E
Sbjct: 543 NVEGKVLMYADRITRSMDYAITETNRRRKIQSEFNEAHGIIPQSVHKEIHDSLEVTKVAE 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D A+  +  +   +       +A + +L  +M  AA+NL FE+AA +RD IK LK +
Sbjct: 603 DQASYVVEDEVMDV-------EAEIMNLEAEMLTAAENLEFEKAAALRDRIKELKGN 652


>gi|209527301|ref|ZP_03275811.1| excinuclease ABC, B subunit [Arthrospira maxima CS-328]
 gi|209492289|gb|EDZ92634.1| excinuclease ABC, B subunit [Arthrospira maxima CS-328]
          Length = 665

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/657 (53%), Positives = 457/657 (69%), Gaps = 4/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P+GDQP AIAQL++ I S      LLG TG+GKTFT+A  I  + RP +V+A
Sbjct: 4   FELKAPFQPTGDQPLAIAQLIQSIKSGHPKTTLLGATGTGKTFTIAATIAQLGRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKTASINDEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y    + L++G+ ++Q++LL  L   QY R 
Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPTEYLNAAIPLRVGEDLDQRQLLRDLASIQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ +++++T+ IY
Sbjct: 184 DTEITRGRFRVRGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEVLQSLDTLNIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP   L+ A   I  ELK +L ELEK G+LLEAQRL+QR  YDLEML   G C 
Sbjct: 243 PARHFVTPGDRLDAACDAIAAELKQQLAELEKAGKLLEAQRLDQRARYDLEMLREVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L GR PG PP  L +Y P+D LL VDESHVT+PQI  MY GD  RK  L E+
Sbjct: 303 GVENYSRHLAGRLPGSPPECLVDYFPDDWLLVVDESHVTVPQIRAMYNGDQARKKVLIEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+       I+VSATPG WE+ Q QG +VEQ+IRPTG+VDP + 
Sbjct: 363 GFRLPSAADNRPLKSEEFWQKVKQCILVSATPGDWEIAQSQGQVVEQVIRPTGVVDPEIF 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI     +  R+L+T LTKRMAEDLTEYL ER IRVRY+HSE+++++
Sbjct: 423 VRPTTGQVDDLIAEIQERIPRNERVLVTTLTKRMAEDLTEYLQERGIRVRYLHSEIQSIQ 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI++ L+ G+FDVL+G+NLLREGLD+P+  LVAI DADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RIEILQSLQEGEFDVLIGVNLLREGLDLPQVSLVAIFDADKEGFLRTERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V  + ILYAD +T S++ AI ET RRR  QLE+N+K+ I P+S+ +     I   L   
Sbjct: 543 HVRGQAILYADNMTDSMRAAIAETNRRRTIQLEYNQKYGITPKSIHKTSSNAILAFLDVS 602

Query: 741 AATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  ID    Q   L  ++    ++ L  +M  AA  L FEEAA+ RD I+ L+
Sbjct: 603 RRLNYQQIDLPCPQVDDLPLEEIPTLIQQLEVRMKEAAQQLEFEEAAQFRDRIRILR 659


>gi|213966506|ref|ZP_03394676.1| excinuclease ABC, B subunit [Corynebacterium amycolatum SK46]
 gi|213950856|gb|EEB62268.1| excinuclease ABC, B subunit [Corynebacterium amycolatum SK46]
          Length = 710

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/672 (52%), Positives = 469/672 (69%), Gaps = 19/672 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ PSGDQP AIA+L + +   E+  +L+G TG+GK+ T A +IE +QRP +VMA
Sbjct: 28  FEVISEFEPSGDQPQAIAELSERLDRGEREVVLMGATGTGKSATAAWLIEKVQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E ++  P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH
Sbjct: 88  PNKTLAAQLANELRSLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VVSSVSCIYG+G+ +SY    V LK G+ V++ + L  LV  QY R 
Sbjct: 148 SATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVWLKEGEEVDRDQFLRLLVDIQYARN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD ++I P++ E+ A RV  FG++I+ +    P+TG  I  V  ++I+
Sbjct: 208 DIAFTRGTFRVKGDVVDIIPAY-EEKAVRVEFFGDEIDSLYYLNPVTGDVIDQVPELRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  IK EL  RL +LE  G+LLEAQRL  R  YDLEM+E  G C 
Sbjct: 267 PATHYVAGPERMERAVADIKAELAERLADLENRGKLLEAQRLRMRTEYDLEMIEQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG  P TL +Y PED L  +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 327 GIENYSRHIDGRAPGSAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDASRKRNLVDF 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E++      + +SATPG +ELE+  G  VEQ+IRPTGLVDP + 
Sbjct: 387 GFRLPSALDNRPLTFDEFDARVGQVVFMSATPGDYELEKAGGEYVEQVIRPTGLVDPKIV 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  ++VRYMHS+V TL+
Sbjct: 447 VKPTEGQIDDLIGEIRKRTERDERVLVTTLTKKMAEDLTDYLLENGVQVRYMHSDVDTLK 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 507 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 566

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736
           NV+ +V +YAD IT S++ AIDET RRREKQ+ +N +H I+PQ +++KI +++D +    
Sbjct: 567 NVSGEVHMYADKITDSMRFAIDETERRREKQIAYNTEHGIDPQPLRKKIADILDQVYDNA 626

Query: 737 --------------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                         LL  A  +  +  A    + + + +A +  L +QM  AA  L FE 
Sbjct: 627 DTDYEGKTGAAADALLSRADGSGAADGASGKQMPRAELEALIADLSEQMAAAARELKFEL 686

Query: 783 AARIRDEIKRLK 794
           A R+RDEI  LK
Sbjct: 687 AGRLRDEIFDLK 698


>gi|295109576|emb|CBL23529.1| excinuclease ABC, B subunit [Ruminococcus obeum A2-162]
          Length = 662

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/656 (52%), Positives = 460/656 (70%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L+KG     + + LLGVTGSGKTFTMA VI  + +P +V+A
Sbjct: 4   FELHSEYKPTGDQPQAIEKLVKGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDTYI K++S N++ID++R 
Sbjct: 64  HNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSTDTYIAKDASTNDEIDKLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IVVSSVSCIYG+G+ E +  M++ L+ G   ++ +++  L+  QY R 
Sbjct: 124 SATAALCERRDVIVVSSVSCIYGLGAPEEFFDMMISLRPGMEKDRDDVIKELIDIQYNRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGTFRV GD +EIFP++  D A RV  FG++I+ I+E   LTG+    ++   I+
Sbjct: 184 EMDFHRGTFRVRGDVLEIFPANYSDHAIRVEFFGDEIDRITEVDVLTGEIRSELKHAAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +  A   I EE+K ++   + E +L+EAQR+ +R  +D+EM++ TG C 
Sbjct: 244 PASHYVVPQSQIQRAADAILEEMKEQVACFKGEDKLIEAQRIAERTNFDVEMMKETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PG+PP TL +Y  +D LL +DESH T+ Q+ GMY GD  RK TL +Y
Sbjct: 304 GIENYSRHLTGLAPGQPPYTLMDYFKDDFLLIIDESHKTVSQVGGMYAGDQSRKQTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F+E+       + VSATPG +E +  + +  EQIIRPTGL+DP VE
Sbjct: 364 GFRLPSAKDNRPLSFDEFENKLDQVMFVSATPGQYEADH-EMLRAEQIIRPTGLLDPKVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N   ++G +IL+T LTKRMAEDLT+Y+ +  IRVRY+HS++ TLE
Sbjct: 423 VRPVEGQIDDLIGEVNKEVEKGNKILITTLTKRMAEDLTDYMKDVGIRVRYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RAEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSEVSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S++ AI ET RRR  Q  +NK+H I P ++K+ + ++I   +   
Sbjct: 543 NSEGHVIMYADVMTDSMRKAIQETERRRSIQEAYNKEHGITPTTIKKAVRDLI--TVSRA 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A T   +     S+++K+    +  + KQM  AA +LNFE+AA +RD++  LK +
Sbjct: 601 VAETEDKLKKDPESMTRKELTKLIGQVEKQMRAAAADLNFEQAAELRDKMIELKKN 656


>gi|170782354|ref|YP_001710687.1| excinuclease ABC subunit B [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|189037958|sp|B0RES6|UVRB_CLAMS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|169156923|emb|CAQ02091.1| ABC excision nuclease subunit B [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 688

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/675 (49%), Positives = 474/675 (70%), Gaps = 18/675 (2%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           ++ +  F++ +DY PSGDQP AIA+L   +++ E   +LLG TG+GK+ T A +IE +QR
Sbjct: 4   TRSVRPFKVVSDYSPSGDQPTAIAELAGRVNAGEPDVVLLGATGTGKSATAAWLIEKVQR 63

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++A NK LAAQL +EF+   P NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SS+N +
Sbjct: 64  PTLILAHNKTLAAQLATEFRELMPDNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSVNAE 123

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++R+RHS T SLL R D +VVS+VSCIYG+G  E Y   +V L++G  + +  L+   V 
Sbjct: 124 VERLRHSTTNSLLSRRDVVVVSTVSCIYGLGQPEQYMNAMVALQVGMQINRDTLIRKFVS 183

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY+R D+   RG FRV GD+IEI P + E++A R+ MFG++IE + + +PLTG  +R +
Sbjct: 184 MQYQRNDVDFSRGNFRVRGDTIEIIPMY-EELAIRIEMFGDEIEALYQLHPLTGDVVRKM 242

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           + + ++  SHYV     +  A+  I++EL+ RL  LE+EG+LLEAQRL  R  +D+EM++
Sbjct: 243 DAVSVFPGSHYVAETEVMQRAIGTIQQELEERLAVLEREGKLLEAQRLRMRTNFDIEMMQ 302

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSR++ GR+ GE P  L +Y P+D L+ +DESHVT+PQI  M+ GD  RK
Sbjct: 303 QIGFCSGIENYSRHIDGRDAGEAPHCLLDYFPDDFLVVIDESHVTVPQIGAMFEGDSSRK 362

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL E+GFRLPS +DNRPL++ E+    P T+ +SATPG +EL    G +VEQIIRPTGL
Sbjct: 363 RTLVEHGFRLPSALDNRPLKWNEFTERVPQTVYMSATPGKYELGMGDG-VVEQIIRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP + ++  + Q++D+ ++I +  ++  RIL+T LTK+MAE+LT+Y  E  +RVRY+HS
Sbjct: 422 IDPAIVVKPTKGQIDDLLEQIRIRVEKDERILVTTLTKKMAEELTDYFAEAGVRVRYLHS 481

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +V TL R+E++ +LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQT
Sbjct: 482 DVDTLRRVELLSELRAGVYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQT 541

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARNV+ +V +YAD +T S++ AI+ET RRREKQ+ +N +H I+P  ++++I ++ +
Sbjct: 542 IGRAARNVSGEVHMYADVLTDSMKRAIEETDRRREKQVAYNTEHGIDPTPLRKRIADITE 601

Query: 735 PILLEDAATTNISIDAQQLSLS------KKKGKAH---------LKSLRKQMHLAADNLN 779
            IL  +   T   ++ +           +++GKA          +  L  QM  AA  L 
Sbjct: 602 -ILAREGEDTKKMLEGRGGGKRSPTPNLRREGKAAAGANELETIISDLNDQMLQAAGELK 660

Query: 780 FEEAARIRDEIKRLK 794
           FE AAR+RDE+  LK
Sbjct: 661 FELAARLRDELGDLK 675


>gi|75910876|ref|YP_325172.1| excinuclease ABC subunit B [Anabaena variabilis ATCC 29413]
 gi|75704601|gb|ABA24277.1| Excinuclease ABC subunit B [Anabaena variabilis ATCC 29413]
          Length = 665

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/664 (52%), Positives = 458/664 (68%), Gaps = 12/664 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F +Q  + P+GDQP+AIAQL+  I    + Q LLG TG+GKTF++A VIE + RP +
Sbjct: 1   MTEFGLQAPFSPTGDQPSAIAQLVASIEGGNRYQTLLGATGTGKTFSIAAVIEKIGRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK ++IN++ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPNNAVEYFVSYYDYYQPEAYIPVTDTYIEKTAAINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  + L+IG  V Q+E+L  L   QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPAEYLKAAIPLQIGMEVNQREILRDLASVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ I +++ +
Sbjct: 181 SRNDVEMGRGRFRVRGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEIINSLQAV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP   L  A + I  ELK R  ELE+ G+L+EAQR++QR  YDLEML   G
Sbjct: 240 NIYPARHFVTPEERLEVACEDIAYELKQRKAELEEAGKLVEAQRIDQRTRYDLEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  GEPP +L +Y P+D LL +DESHVT+PQI GMY GD  RK  L
Sbjct: 300 YCNGVENYSRHLAGRQAGEPPESLIDYFPKDWLLVIDESHVTVPQIRGMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+ EE+       I VSATPG+WELE  +  IVEQ+IRPTG++DP
Sbjct: 360 IEHGFRLPSAADNRPLKAEEFWQKVNQCIFVSATPGNWELEISENRIVEQVIRPTGVIDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    Q++D+  EI        R+L+T LTKRMAEDLTEYL E  ++VRY+HSE+ 
Sbjct: 420 EISVRPTEGQIDDLLGEIKDRIDLHERVLITTLTKRMAEDLTEYLQEHGVKVRYLHSEIN 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           +++RIEI++DLR G FDVLVG+NLLREGLD+PE  LVAI+DADKEGFLR++ SLIQTIGR
Sbjct: 480 SIQRIEILQDLRQGSFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK-------IM 730
           AAR++  + ILYAD +T S+  A++ET RRR  Q+ +NK H I PQ + +K        +
Sbjct: 540 AARHIRGQAILYADNMTDSMIKAVEETDRRRNIQVAYNKLHGITPQPIVKKSSNAILSFL 599

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           EV   +   D       ID     L  ++    +  L  QM  A+  L FEEAA++RD I
Sbjct: 600 EVSRRLNATDLKVVEEHID----ELPLEEIPNLIDKLEAQMKEASKKLEFEEAAKLRDRI 655

Query: 791 KRLK 794
           K+L+
Sbjct: 656 KQLR 659


>gi|118617256|ref|YP_905588.1| excinuclease ABC subunit B [Mycobacterium ulcerans Agy99]
 gi|189037984|sp|A0PP48|UVRB_MYCUA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|118569366|gb|ABL04117.1| excinuclease ABC (subunit B-helicase) UvrB [Mycobacterium ulcerans
           Agy99]
          Length = 701

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/693 (51%), Positives = 477/693 (68%), Gaps = 33/693 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I + E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 7   FEVISPHDPAGDQPAAINELERRIRAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 67  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+L++G  V +  LL  LV  QY R 
Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELQVGTDVPRDGLLRLLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ ED+A R+  FG+ IE +   +PLTG  +R V++++I+
Sbjct: 187 DLSFTRGSFRVRGDTVEIIPSY-EDLAVRIEFFGDGIEALYYLHPLTGDVVRQVDSLRIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE  G+LLEA RL  R  YD+EM+   G C 
Sbjct: 246 PATHYVAGPERMAQAISTIEEELAERLAELEGHGKLLEAHRLRMRTNYDIEMMRQVGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED LL +DESHVT+PQI GMY GD  RK  L E+
Sbjct: 306 GIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEF 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL++EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 366 GFRLPSAVDNRPLQWEEFADRIGQTVYLSATPGPYELSQSGGEFVEQVIRPTGLVDPKVV 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A+   R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 426 VKPTKGQIDDLIGEIRQRAEVDQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739
           NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D +  E 
Sbjct: 546 NVSGEVHMYADKITDSMKEAIDETERRRAKQVAYNEANGIDPQPLRKKIADILDQVYREA 605

Query: 740 --DAATTNISIDAQQLSLSKKK------GKA---------------------HLKSLRKQ 770
               A  ++ I     + S+ +      G+A                      +K L  Q
Sbjct: 606 DDTEAAESVPIGGSGRNSSRGRRAQGEPGRAVSAGVFEGRDTSTMPRAELADLIKDLTSQ 665

Query: 771 MHLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           M +AA +L FE AAR RDEI  LK     +G+D
Sbjct: 666 MMVAARDLQFELAARFRDEIADLKKE--LRGMD 696


>gi|148241173|ref|YP_001226330.1| excinuclease ABC subunit B [Synechococcus sp. RCC307]
 gi|147849483|emb|CAK26977.1| Helicase subunit of the DNA excision repair complex [Synechococcus
           sp. RCC307]
          Length = 668

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/662 (51%), Positives = 462/662 (69%), Gaps = 11/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  Y P+GDQP AI  L++G+   ++ Q LLG TG+GKTF++A VI+   RPA+V+A
Sbjct: 3   FRLEAPYSPNGDQPTAIETLVQGVEGGQRYQTLLGATGTGKTFSIANVIQRTGRPALVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFPHNAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 63  HNKTLAAQLCNELRQFFPHNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V   +G+++  +  L  LV  QY R 
Sbjct: 123 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVPFSVGETLNLRGSLRELVNNQYSRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I RG FRV GD +EI P++ ED   R+ +FG+++E I    P TG+ ++++ETI IY
Sbjct: 183 DTEIARGRFRVKGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSLETINIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L +A+  I++EL+ RL  L   G+LLEAQRLEQR  YD+EML+  G C 
Sbjct: 242 PAKHFVTPKDRLESAVGAIRQELRDRLDWLNANGKLLEAQRLEQRTVYDIEMLQQVGYCN 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L ++
Sbjct: 302 GVENYARHLAGREAGTPPECLIDYFPDDWLLVVDESHVTCSQLQAMYNGDRSRKQVLIDH 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+  E+      TI VSATPG WE++   G + EQ+IRPTG++DP +E
Sbjct: 362 GFRLPSAADNRPLKGTEFWDKAKQTIFVSATPGDWEMQVSDGQVAEQVIRPTGVLDPLIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  QV+D+  EI + A++  R+L+T LTKRMAEDL++YL E  ++VRYMHSE+ ++E
Sbjct: 422 VRPSGGQVDDLLGEIRVRAERNERVLVTTLTKRMAEDLSDYLAENQVKVRYMHSEIHSIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII+DLR G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 482 RIEIIQDLRNGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           +V+   +LYAD +T S+  AI ET RRR  Q+ +N+KH I P +  +K     +PIL   
Sbjct: 542 HVSGVALLYADNMTDSMVKAISETERRRAIQMAYNEKHGITPHAAGKKSTH--NPILAFL 599

Query: 738 -----LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                L D        +A+Q ++  +     ++ L ++M  AA  L+FEEAA +RD IK+
Sbjct: 600 EMSRKLNDEQLDEAVEEAKQDAVPLENLPELIQQLEERMKGAASKLDFEEAANLRDRIKQ 659

Query: 793 LK 794
           L+
Sbjct: 660 LR 661


>gi|282897605|ref|ZP_06305605.1| Excinuclease ABC, B subunit [Raphidiopsis brookii D9]
 gi|281197528|gb|EFA72424.1| Excinuclease ABC, B subunit [Raphidiopsis brookii D9]
          Length = 665

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/658 (52%), Positives = 461/658 (70%), Gaps = 6/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q  + P+GDQP AIAQ++K I  +++ Q LLG TG+GKTF++A VIE + +P +V+A
Sbjct: 4   FTLQAPFSPTGDQPQAIAQMIKNIEGKQRYQTLLGATGTGKTFSIAAVIEKVGKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFPHNAVEYFVSYYDYYQPEAY+P TDTYIEK S+IN +ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPHNAVEYFVSYYDYYQPEAYIPVTDTYIEKTSAINSEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  + L+IG  ++ +E++  L+  QY R 
Sbjct: 124 SATRSLFEREDVIVVASISCIYGLGMPAEYLKAAINLEIGMEIDPREVIRKLISVQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + RG FRV GD IEI P++ ED   RV  FG+DI+ I    P+ G+ + ++E I IY
Sbjct: 184 DIEMGRGKFRVRGDVIEIGPAY-EDRIVRVEFFGDDIDAIRYVDPVNGEIMSSLERISIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L  A   I +ELK   ++LE+ G+L+EAQR++QR  YD+E+L   G C 
Sbjct: 243 PARHFVTPKERLEIACVEIADELKAYKLKLEELGKLVEAQRIDQRTRYDIELLREVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSRYL GR  GEPP  L +Y P+D LL +DESHVT+PQI GMY GD  RK  L ++
Sbjct: 303 GVENYSRYLAGRQAGEPPECLIDYFPQDWLLVIDESHVTVPQIRGMYNGDQARKKVLIDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+       I VSATPG WE+E     IVEQIIRPTG++DP + 
Sbjct: 363 GFRLPSAGDNRPLKAEEFWQKVSQCIFVSATPGDWEIEISGKNIVEQIIRPTGVLDPQIY 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+++  EI+       R+L+T LTKRMAEDLTEYL  R++RVRY+HSE+ +++
Sbjct: 423 VRPTAGQVDNLLGEIHQRVDNSERVLITTLTKRMAEDLTEYLENRSVRVRYLHSEINSIQ 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI++DLR G FDVLVG+NLLREGLD+PE  LV I+DADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RIEILQDLRNGSFDVLVGVNLLREGLDLPEVSLVVIMDADKEGFLRAERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK----IMEVIDPI 736
           ++   VI+YAD +T S+  A++ET RRR  Q+ +N+ H I PQ V +K    I+  +D  
Sbjct: 543 HLRGTVIMYADNLTGSMIKAMEETDRRRGIQMAYNQIHKITPQPVFKKSGNSILSFLDVS 602

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              +A    + +D Q   L+ ++    + +L KQMH AA  + FE AA++RD IK L+
Sbjct: 603 RRLNANDLKL-VDEQWHDLNLEEIPQLITTLEKQMHDAAKKMEFEHAAKLRDRIKSLR 659


>gi|255038399|ref|YP_003089020.1| excinuclease ABC subunit B [Dyadobacter fermentans DSM 18053]
 gi|254951155|gb|ACT95855.1| excinuclease ABC, B subunit [Dyadobacter fermentans DSM 18053]
          Length = 672

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/671 (50%), Positives = 476/671 (70%), Gaps = 11/671 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL++GI + E  Q LLGVTGSGKTFT+A V+  + +P +V++
Sbjct: 3   FELTSEYQPTGDQPEAINQLIQGIENGEPAQTLLGVTGSGKTFTVANVVAKVNKPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEA++  T+TYIEK+  IN++I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPGNAVEYFISYYDYYQPEAFISSTNTYIEKDLMINQEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
               SL+  R D IVV+SVSCIYG G+   Y + IV  K+GD V + + L  LV+  Y R
Sbjct: 123 HTVSSLMSGRRDVIVVASVSCIYGAGNPLEYKKSIVSAKLGDVVPRNQFLFRLVEILYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RGTFRV GD++++FP +  D A+R   FG++IEEI    P TG+KI + + I I
Sbjct: 183 TEVEFNRGTFRVKGDTVDVFPGY-ADFAYRFIFFGDEIEEIQRIEPETGKKISSEKAIAI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VT R  LN ++K I+++L+M++     EGRL EA+R+++R  +D+EM+   G C
Sbjct: 242 FPANLFVTGRDVLNQSIKEIQDDLQMQIKYFIGEGRLAEAERVKERTEFDMEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY   R PG+ P  L +Y PED L+ VDESHVT+PQI  M+ GD  RK  L E
Sbjct: 302 SGIENYSRYFDRRMPGQRPFCLLDYFPEDFLMVVDESHVTMPQIRAMWGGDRSRKEALVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL F+E+  + P TI VSATP  +EL + +G++VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPSALDNRPLTFQEFEDMTPQTIFVSATPADYELRKSEGVVVEQIIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI    + G RIL+T LTKRMAE+L++YL    I+ RY+HSEVK L
Sbjct: 422 EVRPSLNQIDDLLEEITERIKLGDRILVTTLTKRMAEELSKYLDRVGIKCRYIHSEVKAL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EI+R+LRLG FDVLVG+NLLREGLD+PE  LVAI+DADKEGFLR   S+IQTIGRAA
Sbjct: 482 DRVEILRELRLGIFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRDTRSMIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   KVI+YADTIT S+QLAIDET RRR  Q+++N  + I P++V++    +++   + 
Sbjct: 542 RNDRGKVIMYADTITGSMQLAIDETNRRRSIQMDYNLANGITPKTVRKSKEAIMEQTSVA 601

Query: 740 DAATTNISIDAQQLSLS-----KKKGKAHLKSL----RKQMHLAADNLNFEEAARIRDEI 790
           D+    + ++ +++ ++     +  GK  L+ L    +++M  AA +L+F EAAR+RDE+
Sbjct: 602 DSKVRKVYVEPEEVRIAADPVVQYMGKTDLQKLIAETQRKMESAAKDLDFLEAARLRDEL 661

Query: 791 KRLKSSPYFQG 801
            +LK+    QG
Sbjct: 662 LQLKARVQEQG 672


>gi|184200839|ref|YP_001855046.1| excinuclease ABC subunit B [Kocuria rhizophila DC2201]
 gi|183581069|dbj|BAG29540.1| UvrABC system protein B [Kocuria rhizophila DC2201]
          Length = 711

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/688 (50%), Positives = 474/688 (68%), Gaps = 36/688 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AIA+L + I   EK  +L+G TG+GK+ T A +IEA+QRP +++ 
Sbjct: 14  FEVVSEFQPAGDQPKAIAELSERIQGGEKDVVLMGATGTGKSATAAWLIEAVQRPTLLLV 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E +   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE+++R+RH
Sbjct: 74  QNKTLAAQLANELRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VVS+VSCIYG+G+ E Y + +V L +G  +++  LL   V  QY R 
Sbjct: 134 SATNALLTRRDTVVVSTVSCIYGLGTPEEYVKQMVTLAVGQEMDRDALLRQFVNMQYVRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E+ A R+  FG++IE I   +PLTG+ I   + + ++
Sbjct: 194 DVDFHRGTFRVRGDTVEIIPMY-EENALRIEFFGDEIEAIYTLHPLTGEVINEEQEMYVF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     + TA++ I++EL+ RL ELE + +L+EAQRL  R  YDLEM+E  G C 
Sbjct: 253 PASHYVAGAERMATAIESIQQELQERLQELESQNKLVEAQRLRMRTQYDLEMMEQMGYCN 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR  G  P  L +Y P+D LL +DESHVT+PQI GMY GD  RK TL ++
Sbjct: 313 GIENYSLHIDGRPRGSAPHCLLDYFPDDFLLIIDESHVTVPQIGGMYEGDMSRKRTLVDH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+       + +SATPG +E+ +   + VEQIIRPTGLVDP V 
Sbjct: 373 GFRLPSAMDNRPLKWGEFLERIGQAMYMSATPGPYEMSKVDSV-VEQIIRPTGLVDPQVV 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ ++I L  ++  R+L+T LTKRMAEDLTEYL E  ++V+Y+HS+V TL+
Sbjct: 432 VKPTKGQIDDLLEQIELRVERDERVLVTTLTKRMAEDLTEYLMEHGVKVQYLHSDVDTLK 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 492 RVELLRELRMGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT+S+ +AI+ET RRRE Q+ +N +H I+PQ +++KI ++ D +  ED
Sbjct: 552 NVSGEVHMYADKITRSMDVAIEETNRRREIQVAYNTEHGIDPQPLRKKIADITDQLARED 611

Query: 741 AATTNI------------SIDAQQLSLSKKKGKAH----------------------LKS 766
             T  +             +   +   S+K G A                       ++S
Sbjct: 612 EDTKTLLAQRSAANNHTAPVKGGKGKNSEKDGAAAAAESKLLRDGVAAAPAEDLVELIES 671

Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLK 794
           L +QM  AA  L FE A R+RDEI  LK
Sbjct: 672 LSEQMRNAAAELKFELAGRLRDEIADLK 699


>gi|291544070|emb|CBL17179.1| Excinuclease ABC subunit B [Ruminococcus sp. 18P13]
          Length = 656

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/655 (53%), Positives = 463/655 (70%), Gaps = 6/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P+GDQP AI QL++G++  EK Q+LLGVTGSGKTFTMA VI  + RP +V+A
Sbjct: 6   FHLKSDYQPAGDQPEAIQQLVEGLNQGEKGQVLLGVTGSGKTFTMANVIAQVNRPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NKILAAQL SEFK FFP NAVEYFVSYYDYYQPEAY+P TD++IEK+ +IN++IDR+RH
Sbjct: 66  HNKILAAQLCSEFKEFFPDNAVEYFVSYYDYYQPEAYIPSTDSFIEKDCAINDEIDRLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +GS E Y  M+V ++ G    +++L+S LV+ QY+R 
Sbjct: 126 SATTALAERRDVIIVASVSCIYSLGSPEEYRSMVVSVRQGMEKSREQLMSELVRIQYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + R  FRV GD +EI  S   D A R+  FG++I+ I+E   +TG+ +  ++   I+
Sbjct: 186 DISLERNKFRVRGDVLEICTSGTADHALRIEFFGDEIDRITEINMVTGEILATLQHAAIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+  R  L  A+  I+ E++ R+   E   +L+EAQR+ QR  YD+EML   G C 
Sbjct: 246 PASHYIVGRDKLEDAIADIEAEMQERVAFFEANHQLIEAQRIAQRTRYDIEMLREIGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+ R PG  P TL ++ P+D LL VDESHVT+PQ+  M  GD  RK TL +Y
Sbjct: 306 GIENYSRVLSRRPPGSVPYTLLDHFPKDFLLIVDESHVTLPQVRAMQAGDHARKKTLIDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F E+N      I VSATPG  E E+  G IVEQ+IRPTGL+DP V 
Sbjct: 366 GFRLPSAYDNRPLNFAEFNEHIGQAIYVSATPGPLEKERS-GRIVEQVIRPTGLLDPLVT 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q+ED+  EI+    +  R+L+T LTKRMAEDLT+YL    +RVRY+H ++ T++
Sbjct: 425 VKPIQGQMEDLLSEIHKRTDRQERVLVTTLTKRMAEDLTDYLEGMGVRVRYLHHDIDTIK 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR+G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 485 RMEIIRDLRMGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AI ET RRR  Q+ +N+ H I P+++ + + EV     LE 
Sbjct: 545 NAQGEVIMYADCVTGSMERAITETERRRSIQMAYNEAHGIIPKTIHKDVREV-----LEI 599

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           ++   +  +     +SKK+ +  + +L  QM  +A  L FE AA +RD+I +L++
Sbjct: 600 SSKETVEQETHAPKMSKKERQKLIATLTDQMKQSAKMLEFEHAAYLRDKIAQLQA 654


>gi|269792460|ref|YP_003317364.1| excinuclease ABC, B subunit [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100095|gb|ACZ19082.1| excinuclease ABC, B subunit [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 671

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/654 (51%), Positives = 460/654 (70%), Gaps = 10/654 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + P+GDQP AI +L++G+ S    Q LLGVTGSGKT+TMA VIEA+QRP +V+A
Sbjct: 4   FVLNSPWPPAGDQPRAIEELVEGVRSGLSRQTLLGVTGSGKTYTMANVIEALQRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP N+V+YFVSYYDYYQPEAY+P  D YIEK++SINE+I+++R 
Sbjct: 64  HNKTLAAQLYSEFKEFFPKNSVQYFVSYYDYYQPEAYLPAQDVYIEKDASINEKIEKLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D IVV+SVSCIYG+G  ++Y   I + K+GDS +++  LS LV   Y R 
Sbjct: 124 SATKALIERRDVIVVASVSCIYGLGKKKNYEDAIFRFKVGDSFDRRSFLSKLVDNFYGRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+    GTFRV GD+++I+PS+  D A RV  F + IE++ E  P++G+ +       ++
Sbjct: 184 DMAFEPGTFRVRGDTVDIYPSY-SDTALRVVFFDDQIEQVLEMDPVSGRILDRRSDGAVF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HYVT +  +  A++ I+ EL+ RL +L   G+LLEAQRLE R  YD+EML   G C 
Sbjct: 243 PAQHYVTDKDRMGQAIRAIENELEERLGDLMSRGKLLEAQRLESRTRYDMEMLSEVGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR PGEPP TL +++PED LLF+DESH+TIPQ+ GMY GD  RK  L E+
Sbjct: 303 GIENYSRHLEGRAPGEPPGTLMDFLPEDYLLFIDESHITIPQVRGMYNGDRARKEILVEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPLRF+E+     T I VSATPG +E+   Q  +VEQIIRPTG++DP VE
Sbjct: 363 GFRLPSCLDNRPLRFDEFEEHMRTVIFVSATPGDYEMATSQR-VVEQIIRPTGVLDPMVE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R ARTQVED+  E+     +G+R L+T LTKR +EDL +YL    I+V+Y+H ++   E
Sbjct: 422 VRPARTQVEDLIGELRAEQDRGMRSLVTTLTKRSSEDLAQYLEGMGIKVKYIHGDLDAFE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E+++DLR G F  LVG+NLLREG+D+PE  LVAIL+AD+EG+LRS  SLIQ IGRAAR
Sbjct: 482 RAELLKDLRSGVFSTLVGVNLLREGIDLPEVSLVAILEADREGYLRSARSLIQMIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  +VILY D +T S+++A++ET RRR  Q E+N++  I P+S+ + +  ++   L+ +
Sbjct: 542 NMAGRVILYGDQVTDSMRVAMEETLRRRRIQEEYNRRMGIEPRSISKAVRSLLPQELVSE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            ++     D        ++    L  L + M  A + L FEEAARIRD I  L+
Sbjct: 602 PSSARGRED--------REVSVDLDQLEEMMWRAVERLEFEEAARIRDRIASLR 647


>gi|219848326|ref|YP_002462759.1| excinuclease ABC subunit B [Chloroflexus aggregans DSM 9485]
 gi|254764902|sp|B8G8R1|UVRB_CHLAD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|219542585|gb|ACL24323.1| excinuclease ABC, B subunit [Chloroflexus aggregans DSM 9485]
          Length = 664

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/659 (51%), Positives = 461/659 (69%), Gaps = 5/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  Y P+GDQP AI +L+ G+ +  + Q LLG TG+GKTF MA +   +QRP +V+A
Sbjct: 3   FRIEAPYQPTGDQPQAIEKLVAGLRAGYRHQTLLGATGTGKTFVMAHIFAQIQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L +QL++EF+ F P  AVE F+SYYD Y PEAYVP  D YIEKE+SINE+IDR+RH
Sbjct: 63  HNKTLVSQLWAEFREFLPDAAVEMFISYYDEYTPEAYVPSKDLYIEKEASINEEIDRLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++LL R D ++V+SVS I+G+GS   Y Q  + L+ G+   + +LL  L+  Q++R 
Sbjct: 123 AATQALLTRRDVLIVASVSAIFGLGSPHDYGQEKIHLRTGEVRNRDKLLRQLIDLQFERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+++I P++ E  A RV  +G++IE I E  PLTG+ +     ++IY
Sbjct: 183 DVDFQRGTFRVRGDTLDIIPANAE-TAIRVEFWGDEIERIVELDPLTGEVLLKHTAVEIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT +  L  A+  I+ EL  RL ELE  G+LLEAQRL+QR  YDLEML   G C 
Sbjct: 242 PAKHFVTTKEKLQLAIVSIQAELNERLQELEAAGKLLEAQRLKQRTLYDLEMLSEVGYCS 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR PG+ P TL +Y P+D L+F+DESH+TIPQ+ GMY GD  RK TL +Y
Sbjct: 302 GIENYSRHLDGRAPGQTPWTLLDYFPDDFLMFIDESHITIPQLRGMYNGDRQRKQTLVDY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       I VSATPG +E E+ + I VEQIIRPTGL+DP +E
Sbjct: 362 GFRLPSALDNRPLKFEEFEQHVYQVIYVSATPGPYEREKSEQI-VEQIIRPTGLLDPEIE 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+  EI    ++  R+L+T LTKRMAEDL +YL E  +R  Y+H+++ T+E
Sbjct: 421 VRPTRGQIDDLLGEIRRRVERKQRVLVTTLTKRMAEDLADYLKEMGVRTMYLHADIDTIE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS+TSLIQ IGRAAR
Sbjct: 481 RVEILRDLRLGVYDVVVGINLLREGLDLPEVSLVAILDADKEGYLRSETSLIQIIGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---L 737
           ++  KVI+YADTIT+S+++AI ET RRRE Q+ HN +H I PQ + + + ++ D I    
Sbjct: 541 HIEGKVIMYADTITRSMEVAIRETQRRREIQMAHNVRHGITPQGIAKGVRDLTDRIRKVA 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            E          A  + L + +    +K L KQM  AA  L FE+AA +RD+I  L+ +
Sbjct: 601 EERGEYVTTPETAVPVDLPRDEVLKLIKDLEKQMKQAAKALAFEKAAALRDQIVELRQA 659


>gi|326803911|ref|YP_004321729.1| excinuclease ABC, B subunit [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650308|gb|AEA00491.1| excinuclease ABC, B subunit [Aerococcus urinae ACS-120-V-Col10a]
          Length = 664

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/655 (52%), Positives = 468/655 (71%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI +L++G+ + +K Q+LLG TG+GKTFTMA VI    RP +V+A
Sbjct: 5   FELVSSYQPSGDQPQAIKKLVEGVENNDKAQVLLGGTGTGKTFTMANVIAETNRPTLVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP +D+YIEK +S+N++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPSSDSYIEKSASVNDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT S+LER D I+V+SVSCIYG+     Y   ++ ++ G  V++ + +  LV  QY+R 
Sbjct: 125 SATSSILERRDTIIVASVSCIYGLVDPMEYKNHVLSIRQGQEVDRNDFMRRLVDMQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +E+F    +  A RV  FG++I+ I +   LTG+   +V+   IY
Sbjct: 185 DIEFRRGTFRVRGDVVEVFLPSRDSEAIRVEFFGDEIDRIRQVDVLTGEVKNDVKHYPIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+V     +  A+  I+ EL+++L +   EG+LLEAQRLEQR  YD+EML   G C 
Sbjct: 245 PATHFVVDYNKMQRAVDSIEAELEVQLKKFNDEGKLLEAQRLEQRTRYDIEMLLEMGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG+PP TL ++ P+D LL VDESH+T+PQ+ GMY GD  RK  L +Y
Sbjct: 305 GIENYSRHMDGRAPGQPPYTLLDFFPDDYLLMVDESHMTMPQVRGMYNGDKARKEQLVDY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       I VSATPG +E+E+  G +VEQIIRPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLKLAEFEERVNQAIYVSATPGDYEIEKSNGEVVEQIIRPTGLLDPKVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +G R+ +T LTK+M+EDLT+YL E  I+V+Y+HS++KTLE
Sbjct: 425 VRPIKGQIDDLISEINERVDRGDRVFVTTLTKKMSEDLTDYLEEVGIKVKYLHSDIKTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LV ILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 485 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVIILDADKEGFLRNERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADT+T S+Q AIDET RRR  Q  +N++H+I P++++++I + I      +
Sbjct: 545 NENGHVIMYADTVTGSMQAAIDETARRRAIQEAYNEEHHITPKTIQKEIRDSIRITTAVN 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            A  N S+      +++ + +  + ++  +M  AA +LNFE+AA +RD I  LK+
Sbjct: 605 NAEENESLMDTIRGMNRNEKEEAVHNVELEMRQAAKDLNFEKAAELRDIILELKA 659


>gi|320011418|gb|ADW06268.1| excinuclease ABC, B subunit [Streptomyces flavogriseus ATCC 33331]
          Length = 706

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/700 (51%), Positives = 485/700 (69%), Gaps = 45/700 (6%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++   + +  F++ + Y PSGDQP AIA+L + + + EK  +LLG TG+GK+ T A +IE
Sbjct: 4   VSKIERSVAPFEVVSPYQPSGDQPTAIAELDRRVRAGEKDVVLLGATGTGKSATTAWMIE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SS
Sbjct: 64  KLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +VQLK+GD V++ +LL 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVQLKVGDEVDRDQLLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V+ QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ 
Sbjct: 184 RFVEIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I    ++ ++  SHYV     +  A+  I++EL+ RL ELEK+G++LEAQRL  R TYD+
Sbjct: 243 ISEDTSLHVFPASHYVAGPERMEKAVTGIEKELEERLAELEKQGKMLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML   G+C  +ENYS +  GR+PG  P TL +Y PED LL +DESHVT+PQI  MY GD
Sbjct: 303 EMLRQIGTCSGVENYSMHFDGRSPGTAPHTLLDYFPEDFLLVLDESHVTVPQIGAMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G  VEQIIR
Sbjct: 363 ASRKRTLVDHGFRLPSALDNRPLKWEEFLGRINQTVYLSATPGKYELSRGDG-FVEQIIR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+M+EDLT+Y  E  I+VR
Sbjct: 422 PTGLVDPEVVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMSEDLTDYFLELGIQVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADK+GFLRS TS
Sbjct: 482 YLHSDVDTLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD +T ++  AIDET RRREKQ+ +N +  ++PQ +++KI 
Sbjct: 542 LIQTIGRAARNVSGQVHMYADKVTPAMAQAIDETNRRREKQIAYNTERGVDPQPLRKKIN 601

Query: 731 EVIDPILLEDAATTNISIDAQQLSLS----KKKGKAHLKSLRK----------------- 769
           +++  I  E+       +D +QL  +     K  KA + +L                   
Sbjct: 602 DIVASIAREE-------VDTEQLLGTGYRQAKDTKAPVPALGGKAGAGAKAKKDGAVVTD 654

Query: 770 ---------------QMHLAADNLNFEEAARIRDEIKRLK 794
                          +M  AA +L FE AAR+RDE+  LK
Sbjct: 655 RPATELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELK 694


>gi|306820888|ref|ZP_07454508.1| excision endonuclease subunit UvrB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551002|gb|EFM38973.1| excision endonuclease subunit UvrB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 655

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/654 (52%), Positives = 468/654 (71%), Gaps = 5/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  +   I+S  K Q LLGVTGSGKTFTMA +I+  ++P +V+ 
Sbjct: 3   FEIISPYQPTGDQPKAIKTMSDSINSGNKFQTLLGVTGSGKTFTMANIIKETKKPTLVIT 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAYV  +DTYIEK+S+IN++ID++R+
Sbjct: 63  HNKTLAAQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVAHSDTYIEKDSAINDEIDKLRY 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT ++LER D ++V+SVSCIYG+G    Y +M+V L+     ++ E++  LV  QY+R 
Sbjct: 123 SATAAILERRDVVIVASVSCIYGLGDPTDYLEMMVSLRPNQQKDRDEVIRELVDIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  +RGTFRV GD +EI P++ ++   RV  FG++IE I E   LTG+ I   E + I+
Sbjct: 183 DVNFVRGTFRVRGDILEILPANTDEKGIRVEFFGDEIERICEINYLTGEIIAQREHVSIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S YVT +  +  A++ I++ELK R+   E    L+EAQR+ QR  YD+EML   G+C+
Sbjct: 243 PASLYVTSKEKMEKAIQGIEKELKDRIQYFEDNNMLVEAQRIAQRTKYDIEMLREIGNCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LTGR  GE P TL ++ P+D L+ +DESHV +PQ+  MY GD  RK +L +Y
Sbjct: 303 GIENYSLHLTGRKVGERPFTLIDFFPKDFLIIIDESHVMLPQLHAMYAGDHSRKKSLIDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+  +    + VSATP  +ELE       EQ+IRPTGL+DP +E
Sbjct: 363 GFRLPSAFDNRPLKFEEFESMINQIMFVSATPAKYELEHSSS-FGEQVIRPTGLLDPIIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EINL A++  R+L+T LTK+MAE LT YL    IRV+Y+HS+V TL+
Sbjct: 422 VRPVDGQIDDLIGEINLRAEKNERVLVTTLTKKMAEKLTTYLENVGIRVKYLHSDVDTLD 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI+IIRDLR+G+FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQT+GRAAR
Sbjct: 482 RIKIIRDLRIGEFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTVGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD+IT+S+++AI+ET RRR  Q  +N++H I P ++ +   EV D I+   
Sbjct: 542 NSNGKVIMYADSITRSMKVAIEETLRRRTIQERYNEEHGITPTTIYK---EVRDLIVATK 598

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           AA    +   +  +L  ++ K  +  L ++M   A+NL FE+AA++RD I+ ++
Sbjct: 599 AAEETTAYGVKD-TLEIEELKQRVIILTEEMLKCAENLEFEKAAKLRDTIREIE 651


>gi|315636043|ref|ZP_07891302.1| excision endonuclease subunit UvrB [Arcobacter butzleri JV22]
 gi|315479699|gb|EFU70373.1| excision endonuclease subunit UvrB [Arcobacter butzleri JV22]
          Length = 657

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/657 (53%), Positives = 464/657 (70%), Gaps = 8/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY PSGDQP AI  L   I +  +   LLGVTGSGKT+T+AKVIE +Q+P ++M 
Sbjct: 4   FKVVSDYEPSGDQPKAIEALSSSIKAGNQYNTLLGVTGSGKTYTIAKVIEKVQKPTLIMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+N VEYF+SYYDYYQPEAY+PR+D +IEK+SSIN++++R+R 
Sbjct: 64  HNKTLAAQLYSEFKQFFPNNHVEYFISYYDYYQPEAYIPRSDLFIEKDSSINDELERLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL  +D IV++SVS  YG+G+   Y  M+ ++++G +  QKE L  L++  YKR 
Sbjct: 124 SATASLLSFDDVIVIASVSANYGLGNPSEYKAMVQRVEVGFNYSQKEFLLKLIEMGYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD I+IFP++ ED   RV  FG+++E I++   +T  K +++  + IY
Sbjct: 184 DKFFDRADFRVNGDVIDIFPAYFEDEFIRVEFFGDEVESITKHEYITNTKTKDLNEVIIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           + + +V  +  L  A+K I+EEL+ RL   +KE +L+E QRL+QR+ +DLEM+E TG C+
Sbjct: 244 SVNPFVVTQENLGRAVKEIEEELEQRLDFFQKEQKLVEYQRLKQRVEFDLEMIEGTGMCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTL---FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENY+R+LTG+  GE P +L   FE + ED LL VDESHV++PQ  GM+  D  RK  L
Sbjct: 304 GIENYARHLTGQKAGETPYSLLDYFEQMDEDFLLVVDESHVSLPQFRGMHAADRSRKEVL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL+F+E+    P  + VSATP   ELE    ++ EQIIRPTGL+DP
Sbjct: 364 VEYGFRLPSALDNRPLKFDEFIKKAPHYVFVSATPNELELEMS-SVVAEQIIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            ++I  +  QVE ++DEI     +  R+L+TVLTK+MAE+L  Y  +  I+V+YMHSE+ 
Sbjct: 423 IIDIIDSEFQVEKLHDEIKKVIAKNERVLVTVLTKKMAEELASYYADLGIKVKYMHSEID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER +IIR+LRLG FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 483 AIERNQIIRELRLGTFDVLIGINLLREGLDIPETSLVAILDADKEGFLRSRTSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N +VIL+A  +T S+Q AIDET RRR+ Q E NK+HNI P+S K K+ E +    
Sbjct: 543 AARNENGRVILFAKKVTDSMQFAIDETNRRRKLQEEFNKEHNITPKSTKRKLDENLKLEE 602

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +D A     ++    S  KK     L  L KQM  AA +LNFEEA R+RDEI ++K
Sbjct: 603 YDDVAWKKQKLEKMPASERKK----ILIELNKQMKKAASDLNFEEAIRLRDEIAKIK 655


>gi|291534604|emb|CBL07716.1| excinuclease ABC, B subunit [Roseburia intestinalis M50/1]
          Length = 660

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/655 (52%), Positives = 463/655 (70%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L+KG     + Q LLGVTGSGKTFTMA VI+A+ +P ++++
Sbjct: 4   FKLHSKYKPTGDQPHAIEELVKGFEEGNQFQTLLGVTGSGKTFTMANVIQALNKPTLIIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP+TDTYI K+S+INE+ID++R 
Sbjct: 64  HNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIAKDSAINEEIDKLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L+ER D IVV+SVSCIYG+GS E Y  M+V L+ G   ++ +++ +LV  QY R 
Sbjct: 124 SATAALVERKDVIVVASVSCIYGLGSPEDYLGMMVSLRPGMEKDRDDVIRALVDIQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EIFP++  D A RV  FG++I+ I+E   LTG+    +E   ++
Sbjct: 184 DMDFHRGTFRVRGDTLEIFPANYGDTAVRVEFFGDEIDRITEVDVLTGEIKCELEHFAVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +  A   I++EL  R+   + E +LLEAQR+ +R  +D+EML+ TG C 
Sbjct: 244 PASHYVVPQEKILKACDAIEQELDERIRYFKGEDKLLEAQRISERTNFDIEMLKETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L G   G  P TL +Y  +D L+ VDESH+TIPQI GMY GD  RK+TL +Y
Sbjct: 304 GIENYSRHLAGLPAGATPHTLMDYFKDDYLIIVDESHITIPQIRGMYAGDQSRKSTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       + VSATP  +E E  + +  EQIIRPTGL+DP V 
Sbjct: 364 GFRLPSAKDNRPLNFEEFESKIDQMLFVSATPNVYEDEH-ELLRTEQIIRPTGLLDPEVV 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N   +   ++L+T LTK+MAEDLT+Y+ E  IRV+Y+HS++ TLE
Sbjct: 423 VRPVEGQIDDLIGEVNKEIKDHHKVLITTLTKKMAEDLTDYMREIGIRVKYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S+++A++ET RRRE Q  +N++H I P ++++ + E+I   + + 
Sbjct: 543 NSEGHVIMYADKITDSMRVAMEETKRRREIQQAYNEEHGITPTTIQKSVRELIS--VSKK 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            A   ++      S+++ +    +  ++K+M  AA +LNFE AA  RD++  LK 
Sbjct: 601 VAKEEMNFKKAPESMNRDELTKLIADIQKKMQKAAADLNFEAAAEYRDKMVELKG 655


>gi|291540621|emb|CBL13732.1| excinuclease ABC, B subunit [Roseburia intestinalis XB6B4]
          Length = 664

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/655 (52%), Positives = 463/655 (70%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L+KG     + Q LLGVTGSGKTFTMA VI+A+ +P ++++
Sbjct: 8   FKLHSKYKPTGDQPHAIEELVKGFEEGNQFQTLLGVTGSGKTFTMANVIQALNKPTLIIS 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP+TDTYI K+S+INE+ID++R 
Sbjct: 68  HNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIAKDSAINEEIDKLRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L+ER D IVV+SVSCIYG+GS E Y  M+V L+ G   ++ +++ +LV  QY R 
Sbjct: 128 SATAALVERKDVIVVASVSCIYGLGSPEDYLGMMVSLRPGMEKDRDDVIRALVDIQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EIFP++  D A RV  FG++I+ I+E   LTG+    +E   ++
Sbjct: 188 DMDFHRGTFRVRGDTLEIFPANYGDTAVRVEFFGDEIDRITEVDVLTGEIKCELEHFAVF 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +  A   I++EL  R+   + E +LLEAQR+ +R  +D+EML+ TG C 
Sbjct: 248 PASHYVVPQEKILKACDAIEQELDERIRYFKGEDKLLEAQRISERTNFDIEMLKETGFCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L G   G  P TL +Y  +D L+ VDESH+TIPQI GMY GD  RK+TL +Y
Sbjct: 308 GIENYSRHLAGLPAGATPHTLMDYFKDDYLIIVDESHITIPQIRGMYAGDQSRKSTLVDY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       + VSATP  +E E  + +  EQIIRPTGL+DP V 
Sbjct: 368 GFRLPSAKDNRPLNFEEFESKIDQMLFVSATPNVYEDEH-ELLRTEQIIRPTGLLDPEVV 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N   +   ++L+T LTK+MAEDLT+Y+ E  IRV+Y+HS++ TLE
Sbjct: 427 VRPVEGQIDDLIGEVNKEIKDHHKVLITTLTKKMAEDLTDYMREIGIRVKYLHSDIDTLE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 487 RAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S+++A++ET RRRE Q  +N++H I P ++++ + E+I   + + 
Sbjct: 547 NSEGHVIMYADKITDSMRVAMEETKRRREIQQAYNEEHGITPTTIQKSVRELIS--VSKK 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            A   ++      S+++ +    +  ++K+M  AA +LNFE AA  RD++  LK 
Sbjct: 605 VAKEEMNFKKDPESMNRDELTKLIADIQKKMQKAAADLNFEAAAEYRDKMVELKG 659


>gi|160893509|ref|ZP_02074294.1| hypothetical protein CLOL250_01060 [Clostridium sp. L2-50]
 gi|156864904|gb|EDO58335.1| hypothetical protein CLOL250_01060 [Clostridium sp. L2-50]
          Length = 662

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/656 (52%), Positives = 465/656 (70%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L+ G     + + LLGVTGSGKTFTMA VI  + +P +V+A
Sbjct: 4   FKLVSEYQPTGDQPQAIKELVDGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYV  TDTYI K+S+IN+ ID+MRH
Sbjct: 64  HNKTLAAQLYSEMKEFFPENAVEYFVSYYDYYQPEAYVASTDTYIAKDSAINDDIDKMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L++R D +VVSSVSCIYGIG  + Y + ++ L++G   ++  ++  L   QY R 
Sbjct: 124 SATAALIDRKDVVVVSSVSCIYGIGDPDEYREQMLSLRVGMIKDRDMVIDELTDIQYVRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EI P    + A RV  FG++I+ I EF PLTG+  R++    I+
Sbjct: 184 DMDFHRGTFRVHGDVLEILPVSTFEDAVRVEFFGDEIDRICEFDPLTGEIRRSLNFTCIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     L  A+  I+ EL  R+   ++  +L+EAQR+E+R  +D+EM+  TG C 
Sbjct: 244 PASHYVVGHEKLERALTKIEAELAERVQYFKENDKLIEAQRIEERTNFDIEMMRETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  L+GR  GE P TL ++  +D LL +DESH+TIPQ+ GMY GD  RK  L +Y
Sbjct: 304 GIENYSGPLSGRESGETPSTLLDFFGDDFLLIIDESHMTIPQVGGMYAGDRSRKQNLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATP  +E E  + +  EQIIRPTGL+DPPV+
Sbjct: 364 GFRLPSALDNRPLNFEEFESKLDQVLFVSATPSKYEAEH-ELLRAEQIIRPTGLLDPPVD 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    +QG ++L+T LTKRMAEDLT++L E  I+V+Y+HS++ T+E
Sbjct: 423 VRPVEGQIDDLMSEILKETEQGHKVLVTTLTKRMAEDLTDFLRENGIKVKYLHSDIDTME 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLR+G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RVEIVRDLRMGVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S++ AI ET RRR+ Q  +NK+H I P+++++ I ++I   + ED
Sbjct: 543 NSEGHVIMYADMMTDSMKRAISETNRRRKIQDAYNKEHGIIPKTIQKSIRDLITNEVTED 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
               +   D +  S++KK+ KA +  L K+M++AA +LNFE AA +RDE+K+ K +
Sbjct: 603 KPVVDAEKDIE--SMTKKELKAMIDKLTKKMNMAAADLNFEMAAIVRDELKKYKEA 656


>gi|152990079|ref|YP_001355801.1| excinuclease ABC subunit B [Nitratiruptor sp. SB155-2]
 gi|151421940|dbj|BAF69444.1| excinuclease ABC, B subunit [Nitratiruptor sp. SB155-2]
          Length = 676

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/677 (51%), Positives = 467/677 (68%), Gaps = 27/677 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M   Y P+GDQP AI +L   I    + Q LLGVTGSGKT+TMAK+IE +Q P ++M 
Sbjct: 4   FEMAAPYPPAGDQPEAIEKLSLSIKEGNRYQTLLGVTGSGKTYTMAKIIEKLQMPTLIMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+SEFK+FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SSIN++++R+R 
Sbjct: 64  HNKTLAAQLFSEFKHFFPKNHVEYFISYYDYYQPEAYLPRQDLFIEKDSSINDELERLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLE +D IVV+SVS  YG+G+   Y +M+ + + G+ + Q+ELL  L++  YKR 
Sbjct: 124 SATASLLEYDDVIVVASVSANYGLGNPNEYRKMVFKFEEGNEIGQRELLFRLLEMGYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD ++I+P++ ED A RV  FG++IE I  F PLT +K++ + TI +Y
Sbjct: 184 DKFFDRGDFRVSGDVVDIYPAYFEDEAIRVEFFGDEIESIYYFDPLTNKKLQELHTITLY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A + ++  +  L  A+K I++EL+ RL    KE RL+E QRL+QR  +DLEMLETTG+C+
Sbjct: 244 AANQFIVGQNRLAEAIKSIEKELEERLDYFLKENRLVEYQRLKQRTEFDLEMLETTGTCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDS---LLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENYSR+LTG+ PGE P +L +Y        L+ VDESHV++PQ  GMY GD  RK  L
Sbjct: 304 GIENYSRHLTGKKPGETPYSLIDYFEAKGQPYLIIVDESHVSLPQFRGMYAGDRSRKEVL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL+FEE+    P  + VSATPG  ELE    ++ EQIIRPTGL+DP
Sbjct: 364 VEYGFRLPSALDNRPLKFEEFINKAPHYLFVSATPGELELE-LSSVVAEQIIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+  +R QVE ++DEI     +G ++L+T LTK+MAEDL++Y  +  I+VRYMHSE+ 
Sbjct: 423 LVELAPSRHQVEILHDEIKKEIAKGNKVLVTTLTKKMAEDLSKYYADLGIKVRYMHSEID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER ++IR LR G+FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT+GR
Sbjct: 483 AIERNQLIRGLRRGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMGR 542

Query: 678 AARNVNSKVILYA-------------------DTITKSIQLAIDETTRRREKQLEHNKKH 718
           AARN   +V+++A                   D IT S+Q AI  T  RR+KQ   NK H
Sbjct: 543 AARNAEGRVLMFADKIEKRVTLESLEDLKAVEDKITGSMQRAIKTTIARRQKQDSFNKAH 602

Query: 719 NINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
            I P++V  ++ E +    L+        +D     L  K+ +  +K LRK MH AA  L
Sbjct: 603 GITPKTVSRRLDENLKSEDLDKLYEKRKKMD----KLPAKEKEKIIKELRKAMHEAAKKL 658

Query: 779 NFEEAARIRDEIKRLKS 795
            FEEAAR+RDEI+++K+
Sbjct: 659 EFEEAARLRDEIEKIKA 675


>gi|33864613|ref|NP_896172.1| excinuclease ABC subunit B [Synechococcus sp. WH 8102]
 gi|81835180|sp|Q7UA24|UVRB_SYNPX RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|33632136|emb|CAE06592.1| excinuclease ABC subunit B [Synechococcus sp. WH 8102]
          Length = 677

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/670 (52%), Positives = 457/670 (68%), Gaps = 17/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           + +   Y P GDQP AI QL++G++  E+ Q LLG TG+GKTFTMA VI    RPA+V+A
Sbjct: 4   YDLTAPYTPKGDQPTAIKQLVQGVNGGERYQTLLGATGTGKTFTMANVIAQTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPENAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G+++  +  L  LV  QY R 
Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGETLNIRSQLRELVNNQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I RG FR+ GD +EI P++ ED   R+ +FG+++E I    P TG+ ++++ET+ IY
Sbjct: 184 DTEIARGRFRMKGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSLETVNIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L++A+  I++EL+ RL  L  EG+LLEAQRLEQR  YDLEML   G C 
Sbjct: 243 PAKHFVTPKDRLDSAIGEIRQELRDRLDFLNGEGKLLEAQRLEQRTKYDLEMLGQVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L E+
Sbjct: 303 GVENYARHLAGREEGTPPECLIDYFPKDWLLIVDESHVTCSQLQAMYNGDQARKKVLIEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+      T+ VSATPG+WELE   G + +Q+IRPTG++DP VE
Sbjct: 363 GFRLPSAADNRPLKGEEFWEKAHQTVFVSATPGNWELEVSGGEVAQQVIRPTGVLDPIVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI   A +  R+L+T LTKRMAEDLT+YL E  +RVRY+HSE+ ++E
Sbjct: 423 VRPTTGQVDDLLGEIRDRASKQQRVLVTTLTKRMAEDLTDYLAENEVRVRYLHSEIHSIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V    +LYAD +T+S+  AI ET RRR+ Q  +N+KH I P +  +K    I   L   
Sbjct: 543 HVEGVALLYADNMTESMAKAISETERRRKIQQTYNEKHGIVPTAAGKKASNSILSFLELS 602

Query: 741 AATTNISIDAQQLSLSKKKGKA----------------HLKSLRKQMHLAADNLNFEEAA 784
                   DA  + ++ K  +A                 +  L  +M  AA  L+FE+AA
Sbjct: 603 RKLKQDGPDADLVQVAGKAAQALEEDPDAGLALEALPELIDQLEGKMKEAAKKLDFEDAA 662

Query: 785 RIRDEIKRLK 794
            +RD IK+L+
Sbjct: 663 NLRDRIKQLR 672


>gi|268610256|ref|ZP_06143983.1| excinuclease ABC subunit B [Ruminococcus flavefaciens FD-1]
          Length = 652

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/653 (53%), Positives = 454/653 (69%), Gaps = 6/653 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +DY P+GDQP AI +L++G+ S +K Q+LLGVTGSGKTFTMA VI  + +P +V+A
Sbjct: 4   FVLHSDYAPAGDQPQAIDKLVQGLESGKKEQILLGVTGSGKTFTMANVIARVNKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NKILAAQL SEF+ FFP NAVEYFVSYYDYYQPEAYVP TD+YIEK+SSIN++ID++RH
Sbjct: 64  HNKILAAQLCSEFREFFPDNAVEYFVSYYDYYQPEAYVPSTDSYIEKDSSINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +GS E Y  M V ++ G    + +L+  LVK +Y+R 
Sbjct: 124 SATTALAERRDVIIVASVSCIYSLGSPEEYRSMCVSIRQGAEKPRDQLIDELVKIRYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   R  FRV GD +EIFP+   D A RV  FG++I+ ISE   +TG+    V    I+
Sbjct: 184 DIAFERNRFRVHGDVVEIFPAMSSDTAVRVEYFGDEIDRISEINVVTGEVKAVVSHAAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     L  A+  I  EL  R+   ++  +L+EAQR+EQR  YD+EML   G C 
Sbjct: 244 PASHYVVGDDKLEAALTEIDRELAERIDYFQQNNKLIEAQRIEQRTHYDMEMLREVGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR L GR  G  P TL ++ PED LL VDESHVT+PQ+  MY GD  RK TL +Y
Sbjct: 304 GVENYSRVLAGRPAGSTPQTLMDHFPEDFLLIVDESHVTLPQVRAMYAGDRARKTTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL F+E+N      I VSATPG  E E+    IVEQ+IRPTGLVDP + 
Sbjct: 364 GFRLPSAMDNRPLNFDEFNDHIHQAIYVSATPGQIEREKTD-TIVEQVIRPTGLVDPEII 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    QV+D+  EIN    +  R+L+T LTK+MAEDLT Y     ++VRY+H ++ T+E
Sbjct: 423 VKPTTGQVDDLLSEINERTARNERVLVTTLTKKMAEDLTSYYENLGVKVRYLHHDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII+DLR G FDVLVGINLLREGLDIPE  L+AILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMEIIKDLRNGVFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD++T S++ AI ET RRR  Q+ +N++H I P+++   I +V D + +  
Sbjct: 543 NAKGQVIMYADSVTGSMERAITETERRRGLQMAYNEEHGIVPKTI---IKDVRDVLEITS 599

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
            A    S   +++S + K  +A ++ L  +M  AA  L FE AA +RD+I+ L
Sbjct: 600 KAKVEKSTAKKKMSAADK--QALIEKLTAEMKNAAKMLEFEHAAYLRDKIREL 650


>gi|218283136|ref|ZP_03489215.1| hypothetical protein EUBIFOR_01801 [Eubacterium biforme DSM 3989]
 gi|218216085|gb|EEC89623.1| hypothetical protein EUBIFOR_01801 [Eubacterium biforme DSM 3989]
          Length = 657

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/655 (52%), Positives = 452/655 (69%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y PSGDQP AI +L+ G+   +K Q+LLG TG+GKTFT++ VI  + RP +V A
Sbjct: 5   FELVSEYKPSGDQPEAIKELVSGLKEDKKFQVLLGATGTGKTFTISNVIAQVNRPTLVFA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFPHN VEYFVSY+DYYQPEAY+P+TDTYI+K +  NE++D +R 
Sbjct: 65  HNKTLAGQLYSEFKEFFPHNRVEYFVSYFDYYQPEAYLPKTDTYIDKNTKTNEELDMLRM 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +A  S+LER D I+V+SV+ IYG  + E Y  MI  L+ G  +E+ EL+ +LV QQYKR 
Sbjct: 125 AAVNSVLERRDTIIVASVASIYGASNPEQYRHMIFTLRTGQIIERNELMLALVHQQYKRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D   +RGTFRV GD IEI P H +    R+ MF +++E I E  P+TG   ++ +   IY
Sbjct: 185 DTDPLRGTFRVRGDVIEITPGHTDRYLIRIEMFDDEVERICEVDPVTGHVNQSYQLYIIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y T    +N A   I+EEL  RL   +++G+ LE +RLEQR  YD+E L   G C 
Sbjct: 245 PANGYATSMDIINHAADTIQEELDERLAYFDEQGKPLEKERLEQRCRYDIEALREFGVCP 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P TLF+Y P+D LL VDESHV++PQI GMY GD  RK  L +Y
Sbjct: 305 GIENYSRHIDGRKPGERPYTLFDYFPDDFLLVVDESHVSLPQIRGMYNGDRARKQVLVDY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF E+  L    I VSATPG +EL+Q  G IVEQIIRPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFNEFEGLIKNAIFVSATPGDYELDQTHGEIVEQIIRPTGLLDPEVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ DEI    ++  R L+T LT RMAEDLT YL   +++V ++H EV T+E
Sbjct: 425 VRPIEGQIDDLVDEIKERIERHERTLITTLTVRMAEDLTSYLKNMDLKVAWLHHEVTTIE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EII DLR GK+DVLVGINLLREGLDIPE  L+AILDADKEGFLRS+ SLIQ IGRAAR
Sbjct: 485 RTEIIHDLRQGKYDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSRRSLIQIIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD IT+S+Q A+DET RRR  Q+E+N+KH I P+++ + I +V+     ++
Sbjct: 545 NAKGKVIMYADKITESMQEAMDETARRRSIQMEYNEKHGIVPKTIIKPIHDVVRSKETKE 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            A   +          +K     +K L ++M  AA  L+FE AA++RD +  +K 
Sbjct: 605 MAAKYLKKKKLPAKQKEKM----IKELEQEMKEAARTLDFERAAQLRDILFEMKG 655


>gi|78211635|ref|YP_380414.1| excinuclease ABC subunit B [Synechococcus sp. CC9605]
 gi|78196094|gb|ABB33859.1| excinuclease ABC, B subunit [Synechococcus sp. CC9605]
          Length = 702

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/670 (51%), Positives = 454/670 (67%), Gaps = 17/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           + +   Y P GDQP AI QL+KG++  E+ Q LLG TG+GKTFTMA VI    RPA+V+A
Sbjct: 27  YDLTAPYSPKGDQPTAIEQLVKGVNGGERYQTLLGATGTGKTFTMANVIAKTGRPALVLA 86

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 87  HNKTLAAQLCNELREFFPENAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 146

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G+++  +  L  LV  QY R 
Sbjct: 147 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGETLNIRGQLRELVNNQYSRN 206

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I RG FR+ GD +EI P++ ED   R+ +FG+++E I    P TG+ +++++ + IY
Sbjct: 207 DTEIARGRFRMKGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSMDAVNIY 265

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L++A+  I+ EL+ RL  L  EG+LLEAQRLEQR  YDLEML   G C 
Sbjct: 266 PAKHFVTPKDRLDSAISAIRSELRERLDVLNGEGKLLEAQRLEQRTKYDLEMLGQVGYCN 325

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L E+
Sbjct: 326 GVENYARHLAGREEGTPPECLIDYFPDDWLLIVDESHVTCSQLQAMYNGDQARKKVLIEH 385

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+      T+ VSATPG+WE+E   G + EQ+IRPTG++DP VE
Sbjct: 386 GFRLPSAADNRPLKGEEFWDKAKQTVFVSATPGNWEMEVSGGEVAEQVIRPTGVLDPVVE 445

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI   A +  R+L+T LTKRMAEDLT+YL E ++RVRY+HSE+ ++E
Sbjct: 446 VRPTTGQVDDLLGEIRDRAAKNQRVLVTTLTKRMAEDLTDYLAENDVRVRYLHSEIHSIE 505

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 506 RIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 565

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V    +LYAD +T+S+  AI ET RRR  Q  +N+KH + P +  +K    I   L   
Sbjct: 566 HVEGVALLYADNMTESMAKAISETERRRAIQQAYNEKHGVVPTAAGKKASNSILSFLELS 625

Query: 741 AATTNISIDAQQLSLSKKKGKA----------------HLKSLRKQMHLAADNLNFEEAA 784
                   DA  + +  K  +A                 +  L  +M  AA  L+FEEAA
Sbjct: 626 RKLKQDGPDADLVEVVGKAAQALENDPDAGLALEALPELIDQLEAKMKEAAKKLDFEEAA 685

Query: 785 RIRDEIKRLK 794
            +RD +K+L+
Sbjct: 686 NLRDRVKQLR 695


>gi|260664164|ref|ZP_05865017.1| excinuclease ABC, B subunit [Lactobacillus jensenii SJ-7A-US]
 gi|260562050|gb|EEX28019.1| excinuclease ABC, B subunit [Lactobacillus jensenii SJ-7A-US]
          Length = 681

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/659 (51%), Positives = 462/659 (70%), Gaps = 6/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQ  AI +L  G  +  K Q+L G TG+GKTFTMA +I  + +P +V++
Sbjct: 10  FDLVSKYKPAGDQGQAIDKLTAGFKAGAKEQILQGATGTGKTFTMANIIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT +L+ERND +VV+SVSCIYG+G    Y+  ++ L  G   ++  LL  LV  QY R 
Sbjct: 130 RATSALMERNDVVVVASVSCIYGLGDPREYAASVLSLHEGQEYDRNVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   + A+RV  FG++I+ I E   LTG+ I   + + ++
Sbjct: 190 DIDFQRGRFRVRGDIVEIFPAGNSNHAYRVEFFGDEIDRIVEVDSLTGEVIGERDQVSLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I +E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNEEQMKQALKRISQEMDLQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  + GR  GEPP TL ++ P+D L+ +DESH T+P+I  MY GD  RK TL +Y
Sbjct: 310 GIENYSAPIEGRKAGEPPHTLLDFFPDDFLILIDESHATMPEIRAMYNGDRKRKETLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL +  G IVEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQILYVSATPGDYELNRT-GKIVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIQGQIDDLVGEINKRIDRDERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+ DLR G FDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   LIQT+GRAAR
Sbjct: 489 RMQILHDLRKGDFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLIQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N +  VI+YAD IT S+++AIDET RRREKQ+  NK+H I P+++ + I +VI    P+ 
Sbjct: 549 NSDGTVIMYADKITDSMRIAIDETRRRREKQIAFNKEHGIVPKTIVKPIRDVISITKPVK 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            E    +   ++  +  L+KK+ +  +K+L +QM  AA  L+FE AA +RD I  L++S
Sbjct: 609 EEKEKESFAELNFDE--LTKKQKQTMIKNLTEQMQEAAKKLDFEAAANLRDAIMELQNS 665


>gi|238854877|ref|ZP_04645207.1| excinuclease ABC subunit B [Lactobacillus jensenii 269-3]
 gi|282931589|ref|ZP_06337082.1| excinuclease ABC, B subunit [Lactobacillus jensenii 208-1]
 gi|238832667|gb|EEQ24974.1| excinuclease ABC subunit B [Lactobacillus jensenii 269-3]
 gi|281304200|gb|EFA96309.1| excinuclease ABC, B subunit [Lactobacillus jensenii 208-1]
          Length = 681

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/659 (51%), Positives = 462/659 (70%), Gaps = 6/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQ  AI +L  G  +  K Q+L G TG+GKTFTMA +I  + +P +V++
Sbjct: 10  FDLVSKYKPAGDQGQAIDKLTAGFKAGAKEQILQGATGTGKTFTMANIIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT +L+ERND +VV+SVSCIYG+G    Y+  ++ L  G   ++  LL  L+  QY R 
Sbjct: 130 RATSALMERNDVVVVASVSCIYGLGDPREYAASVLSLHEGQEYDRNVLLRDLINIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   + A+RV  FG++I+ I E   LTG+ I   + + ++
Sbjct: 190 DIDFQRGRFRVRGDIVEIFPAGNSNHAYRVEFFGDEIDRIVEVDSLTGEVIGERDQVSLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I +E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNEEQMKQALKRISQEMDLQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  + GR  GEPP TL ++ P+D L+ +DESH T+P+I  MY GD  RK TL +Y
Sbjct: 310 GIENYSAPIEGRKAGEPPHTLLDFFPDDFLILIDESHATMPEIRAMYNGDRKRKETLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL +  G IVEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQILYVSATPGDYELNRT-GKIVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIQGQIDDLVGEINKRIDRDERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+ DLR G FDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   LIQT+GRAAR
Sbjct: 489 RMQILHDLRKGDFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLIQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N +  VI+YAD IT S+++AIDET RRREKQ+  NK+H I P+++ + I +VI    P+ 
Sbjct: 549 NSDGTVIMYADKITDSMRIAIDETRRRREKQIAFNKEHGIVPKTIVKPIRDVISITKPVK 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            E    +   ++  +  L+KK+ +  +K+L +QM  AA  L+FE AA +RD I  L++S
Sbjct: 609 EEKEKESFAELNFDE--LTKKQKQTMIKNLTEQMQEAAKKLDFEAAANLRDAIMELQNS 665


>gi|220912566|ref|YP_002487875.1| excinuclease ABC subunit B [Arthrobacter chlorophenolicus A6]
 gi|254764900|sp|B8H7K6|UVRB_ARTCA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|219859444|gb|ACL39786.1| excinuclease ABC, B subunit [Arthrobacter chlorophenolicus A6]
          Length = 704

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/686 (50%), Positives = 467/686 (68%), Gaps = 39/686 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQPAAIA L + I++ EK  +LLG TG+GK+ T A +IE +QRP +VM 
Sbjct: 14  FEVISEFKPAGDQPAAIADLTERINNGEKDVVLLGATGTGKSATTAWLIEQVQRPTLVMV 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYV +TDT+IEK+SSINE+++R+RH
Sbjct: 74  QNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVAQTDTFIEKDSSINEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV++VSCIYG+G+ E Y   +V L+ G  + + +LL   V  QY R 
Sbjct: 134 SATNALLTRRDVVVVATVSCIYGLGTPEEYIAGMVTLRKGAEMNRDDLLRKFVSMQYARN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E++A R+  FG++IE I   +PLTGQ I++ E + ++
Sbjct: 194 DMDFHRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIENIQTLHPLTGQIIQDEEEMYVF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     ++ A+K I++EL  RL  LE + +L+EAQRL  R TYDLEM++  G C 
Sbjct: 253 PASHYVAGPERMSRAIKRIEDELAERLQVLESQNKLVEAQRLRMRTTYDLEMMQQMGFCN 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR  G  P  L +Y P+D LL +DESHVT+PQI  MY GD  RK  L ++
Sbjct: 313 GIENYSSHIDGRARGTAPHCLLDYFPDDFLLVIDESHVTVPQIGAMYEGDMSRKRNLVDF 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+++E+      T+ +SATPG +EL +  G  V+QIIRPTGL+DP V 
Sbjct: 373 GFRLPSAMDNRPLKWDEFLERVGQTVYLSATPGKYELGKADGF-VQQIIRPTGLIDPEVV 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI    ++  R+L+T LTKRMAEDLT+YL    ++V Y+HS+V TL 
Sbjct: 432 VKPTKGQIDDLLGEIRTRTERNERVLVTTLTKRMAEDLTDYLLGHGVKVEYLHSDVDTLR 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR+G FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 492 RVELLRELRMGTFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+  AIDET RRR  Q+ +N +H I+PQ +++KI ++ D +  ED
Sbjct: 552 NVSGQVHMYADRITDSMAQAIDETNRRRAIQVAYNTEHGIDPQPLRKKIADITDQLAKED 611

Query: 741 AATTNISIDAQQLSLSKKKGK--------------------------------AHLKSLR 768
           A T     DA   S    KGK                                  +  L 
Sbjct: 612 ADT-----DALLGSFDYGKGKRGITGANKPGAKKAAAQVRADGLAAAPAEDLVGMIAQLT 666

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLK 794
           +QMH AA  L FE AARIRDE+  LK
Sbjct: 667 EQMHGAAAELQFEVAARIRDEVSELK 692


>gi|148827044|ref|YP_001291797.1| excinuclease ABC subunit B [Haemophilus influenzae PittGG]
 gi|148718286|gb|ABQ99413.1| excinuclease ABC subunit B [Haemophilus influenzae PittGG]
          Length = 612

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/609 (55%), Positives = 444/609 (72%), Gaps = 15/609 (2%)

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR SA
Sbjct: 5   KTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRLSA 64

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           T+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + QY R D 
Sbjct: 65  TKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRNDQ 124

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
              RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V    IY  
Sbjct: 125 AFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIYPK 184

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C  I
Sbjct: 185 THYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCSGI 244

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK TL EYGF
Sbjct: 245 ENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEYGF 304

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+DP +EIR
Sbjct: 305 RLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLDPLIEIR 364

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
               QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ T+ER+
Sbjct: 365 PVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVERV 424

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG+FDVLVGINLLREGLDIPE  +VAILDADKEGFLRS+ SLIQTIGRAARN+
Sbjct: 425 EIIRDLRLGEFDVLVGINLLREGLDIPEVSIVAILDADKEGFLRSERSLIQTIGRAARNL 484

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           N K ILYAD+ITKS++ AI ET RRREKQ ++N++H I PQ++ +K+ E++D   +   A
Sbjct: 485 NGKAILYADSITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLD---IGQGA 541

Query: 743 TTNISIDAQQLSLS------------KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                 + Q+  ++             K+ +  +K L +QM+  A +L FE+AA IRD++
Sbjct: 542 NQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRDQL 601

Query: 791 KRLKSSPYF 799
            +L+    F
Sbjct: 602 HQLREQFVF 610


>gi|302671953|ref|YP_003831913.1| excinuclease ABC B subunit UvrB [Butyrivibrio proteoclasticus B316]
 gi|302396426|gb|ADL35331.1| excinuclease ABC B subunit UvrB [Butyrivibrio proteoclasticus B316]
          Length = 663

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/654 (52%), Positives = 459/654 (70%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI  L++G  +  + + LLGVTGSGKTFTMA VI+A+Q+P ++++
Sbjct: 3   FKIHSEYKPTGDQPKAIKDLVEGFKAGNQFETLLGVTGSGKTFTMANVIQALQKPTLIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP+TDTYI K+S+IN++ID++R 
Sbjct: 63  HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIAKDSAINDEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D IVV+SVSCIYG+GS E +  M + L+ G + ++ E +  LV  QY R 
Sbjct: 123 SATASLAERKDVIVVASVSCIYGLGSPEEFKGMSISLRPGMNKDRDETIKELVAIQYNRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + R  FRV GD+IEIFP++ +D   RV  FG++I+ I E  P+T +    +  + IY
Sbjct: 183 DLELSRCNFRVRGDTIEIFPANADDYLIRVEFFGDEIDRICEIEPVTAKVRSELSHVMIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +N A   I++EL+ ++   + E RL+EAQR+ +R  +D+EM+  TG C 
Sbjct: 243 PASHYVVPQEKINMACDNIEKELEEQIRFFKGEDRLIEAQRISERTNFDVEMMRETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L    PGEPP TL ++   D L+ VDESH+TIPQI  MY GD  RK TL +Y
Sbjct: 303 GIENYSRHLNFMKPGEPPLTLLDFFDRDFLIIVDESHMTIPQIGAMYHGDRSRKLTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       +  SATPG +E E+ + +  EQ+IRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLNFEEFEEHIDQMLFCSATPGKYE-EEHELLRTEQVIRPTGLLDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  ++L+T LTKRMAEDLTEYL E  IRV+Y+HS++ TLE
Sbjct: 422 VRPVEGQIDDLIGEIRTEVDKKNKVLVTTLTKRMAEDLTEYLAESGIRVKYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL  FDVLVGINLLREGLDIPE  LVAI+DADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RSEIIRDMRLDVFDVLVGINLLREGLDIPEISLVAIIDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S+Q AIDET RRR  Q E+NK+H I PQ++K+ + ++I   + + 
Sbjct: 542 NAEGRVIMYADNMTDSMQKAIDETKRRRAIQEEYNKEHGITPQTIKKAVRDLI--AVTKA 599

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   +    S+ + + +  +  ++K+M  AA  L+FE AA +RD++  LK
Sbjct: 600 VTKEEFKFEKDPESMDQAELEKLIGDVQKKMKRAATELDFETAATLRDQMIELK 653


>gi|317132478|ref|YP_004091792.1| excinuclease ABC, B subunit [Ethanoligenens harbinense YUAN-3]
 gi|315470457|gb|ADU27061.1| excinuclease ABC, B subunit [Ethanoligenens harbinense YUAN-3]
          Length = 670

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/656 (52%), Positives = 457/656 (69%), Gaps = 8/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQPAAI QL  G+   ++ Q LLGVTGSGKTFTMA +I  + RP +V+A
Sbjct: 4   FHLVSPYQPTGDQPAAIKQLADGVLRGDRAQTLLGVTGSGKTFTMANIIAKVNRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFKEFFPDNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D ++V+SVSCIY +G    Y  M++ L+ G   ++ E+L  LV  QY+R 
Sbjct: 124 SATSALSERRDVVIVASVSCIYNLGDPIDYRNMVISLRPGMQRDRDEVLKKLVSLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  +R  FRV GD +E+FP++  + A R+  FG+++E I+E   +TG+    +  + IY
Sbjct: 184 DVNFVRNKFRVRGDVVEVFPAYSGENAVRIEFFGDEVERITEISTVTGEVKGMLGHVAIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+ P   +  A+  +++E+  R+       +LLEAQR+EQR  YD+EML   G C 
Sbjct: 244 PASHYIVPEEKMLPALDDLEQEMVERVKWFRAHDKLLEAQRIEQRTKYDIEMLREIGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L  R PG  P TL +Y P+D LLFVDESHVT+PQ+ GM  GD  RK TL +Y
Sbjct: 304 GIENYSRVLLRRPPGATPFTLLDYFPDDYLLFVDESHVTLPQVRGMSAGDRARKQTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATPG +E E+    IVEQ+IRPTGLVDP V+
Sbjct: 364 GFRLPSALDNRPLNFEEFLRHVNQAVFVSATPGDFEREES-AQIVEQVIRPTGLVDPEVQ 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EINL  ++  R+L+T LTK+MAEDLT Y     ++VRYMH +++ +E
Sbjct: 423 VRPTDGQIDDLLSEINLRVERHERVLVTTLTKKMAEDLTRYFDGMGVKVRYMHHDIEAIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSL+QTIGRAAR
Sbjct: 483 RMQIIRDLRLGGFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLVQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VILYADT+T S++ AI ET RRR  Q ++N+ H I P+++ + + ++I      +
Sbjct: 543 NANGLVILYADTVTPSMERAISETERRRAIQTQYNEAHGITPKTIVKDVRDII------E 596

Query: 741 AATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            ++ + + D +    L K +    ++ L  +M  AA  L FE+AA +RD+IK L+ 
Sbjct: 597 ISSKDDTQDRKSFKKLPKPERDKIIRKLSVEMKEAARMLEFEQAAFLRDKIKELRG 652


>gi|325294874|ref|YP_004281388.1| UvrABC system protein B [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065322|gb|ADY73329.1| UvrABC system protein B [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 661

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/656 (53%), Positives = 463/656 (70%), Gaps = 7/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P GDQP AI +L +GI    K Q LLG+TGSGKT+T+AKVIE +Q+P +V++
Sbjct: 5   FKVVSPFKPKGDQPKAIKELSEGIKKGLKYQTLLGITGSGKTYTIAKVIEEVQKPTLVIS 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK+LAAQLY E KNFFP NAVEYF+SYYDYYQPE+Y+P  D YIEK+ SIN  IDRMRH
Sbjct: 65  HNKVLAAQLYHELKNFFPENAVEYFISYYDYYQPESYIPSRDLYIEKDCSINPVIDRMRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D IVVSSVSCIYG+GS + Y  + ++ ++G+ +E+ E++  LV   Y+R 
Sbjct: 125 SATVSLLTRQDVIVVSSVSCIYGLGSPDYYKTLSLRFQVGEEIERDEVIRKLVTLGYERS 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  +  G F+V GD I+IFP+ +ED   RV +FG++++ I        + ++   +  +Y
Sbjct: 185 EYELKPGIFKVRGDVIDIFPADVEDHFVRVELFGDEVDSIVMLDYFNQKVLKEFNSYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY TP   +  A++ I++EL+ R+    +EG+ LEA+R+EQR  YD+E+L   G C+
Sbjct: 245 PASHYATPYSKIVEAVQSIEKELEERVKYFLREGKELEARRIEQRTKYDIELLLEIGHCK 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR PGEPP TL  Y P+D L+ +DESHVT+PQI  M+RGD  RK  L E+
Sbjct: 305 GIENYSRHLDGRKPGEPPFTLLNYFPDDFLVVIDESHVTVPQIKAMWRGDRARKYNLIEH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+    P  I VSATPG +ELE  +  +VEQIIRPTGL+DP VE
Sbjct: 365 GFRLPSAYDNRPLNFEEFLKRVPQAIFVSATPGPFELEVSEK-VVEQIIRPTGLLDPIVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++ +  EI    ++  RIL+T LTK+ AE+L++YL E+ I+ +YMHSE+ ++E
Sbjct: 424 VRKTEGQIDHLISEIKKRVEKNERILITTLTKKSAEELSKYLLEKGIKAKYMHSEIDSVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIR LR G+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 484 RVEIIRGLRSGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN KVILYAD IT S++ AI+ET RRR+ Q E+NKK+ I PQ+VK      ++  +LED
Sbjct: 544 NVNGKVILYADKITPSMKKAIEETERRRKIQKEYNKKYGITPQTVK----RALETSILED 599

Query: 741 AATTNISIDAQQLSLSKKKGK--AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A         ++ +  K + +    +  L K+M  AA N  FE AA +RD+IK L+
Sbjct: 600 AGIMPFYKKEERENTPKTEEELLKEIARLEKEMKEAAKNWEFERAAELRDKIKELQ 655


>gi|256842752|ref|ZP_05548240.1| excinuclease ABC, B subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256614172|gb|EEU19373.1| excinuclease ABC, B subunit [Lactobacillus crispatus 125-2-CHN]
          Length = 681

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/659 (50%), Positives = 468/659 (71%), Gaps = 5/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + +P +V+ 
Sbjct: 10  FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIAKLNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L+ERND +VV+SVSCIYG+G  + Y++ ++ +  G+  ++  LL  LV  QY R 
Sbjct: 130 ATTSALMERNDVVVVASVSCIYGLGDPKEYARSVLMIHEGEEYDRNTLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+   + A+R+  FG++I+ I E   LTG+ I   E+I ++
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPAGNSNHAYRIEFFGDEIDRIVEVDSLTGEVIGERESISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L  A+  I +E+K+++ + E EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNDEQLRRALGAISKEMKLQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERTDH-KVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVGEINKRIDRHERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+QT+GRAAR
Sbjct: 489 RMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N N +VI+YADTIT S++ AI  T RRR+ Q+E NK+H I P+++ + I +VI    P  
Sbjct: 549 NANGEVIMYADTITDSMRAAIKATKRRRKIQMEFNKEHGITPKTIIKPIQDVISITKPSS 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            ++  + + + D     L+ K+ K  + +L++QM  AA  L+FEEAA +RD I  L+ S
Sbjct: 609 EKEEKSDSFA-DLNFDELTAKQKKTMISNLQEQMQEAAKKLDFEEAANLRDAIMELQKS 666


>gi|163752829|ref|ZP_02159953.1| excinuclease ABC subunit B [Kordia algicida OT-1]
 gi|161326561|gb|EDP97886.1| excinuclease ABC subunit B [Kordia algicida OT-1]
          Length = 662

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/658 (51%), Positives = 463/658 (70%), Gaps = 5/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+GDQP AI QL+ GI + E+ Q LLGVTGSGKTFT+A VIE +++P +++A
Sbjct: 3   FKIISDFSPTGDQPQAIEQLVSGIKANEQYQTLLGVTGSGKTFTVANVIEKVEKPTLILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P + TYIEK+ SINE+I+++R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPTSGTYIEKDLSINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IV++SVSC+YGIG+   + + +++L+    + + +LL  LV+  Y R
Sbjct: 123 STTSSLLSGRRDVIVIASVSCLYGIGNPIEFQKNVIKLQRDQVISRTKLLHRLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +   + G+FRV GD ++I+P +  D A+R+  FG++IEEI  F P T   +     + I
Sbjct: 183 TEADFLHGSFRVKGDVVDIYPGY-ADFAFRIHFFGDEIEEIESFDPATNTVLEKYTQLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+E++  ++   ++ G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPEVLQNAIHQIQEDMVKQVDYFKEIGKHLEAKRLEERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ VDESHVTI Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGRAPGTRPFCLLDYFPDDYLMVVDESHVTISQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  ++   I VSATP  +EL +  G+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEMIQNQVIYVSATPADYELHKTDGVYVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI+   ++  R+L+T LTKRMAE+LT+YL    IR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLVEEIHQRTEKDERVLVTTLTKRMAEELTKYLSRIQIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVQIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736
           RNVN K I+YAD ITKS+Q  IDETT RREKQ+E+N +HNI P+ + + +   +   + +
Sbjct: 542 RNVNGKAIMYADKITKSMQKTIDETTYRREKQIEYNTQHNITPKGLNKSLNNALSKDESL 601

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             ED   T  + +     LSK + +  ++  RK M  AA  LNF +AA+ RDEIK L+
Sbjct: 602 AWEDEIETKKAAEPDLEYLSKAQIEKLIREKRKAMETAAKELNFMDAAKYRDEIKLLQ 659


>gi|91774217|ref|YP_566909.1| excinuclease ABC subunit B [Methanococcoides burtonii DSM 6242]
 gi|121691546|sp|Q12TR7|UVRB_METBU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|91713232|gb|ABE53159.1| Excinuclease ABC, B subunit [Methanococcoides burtonii DSM 6242]
          Length = 660

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/668 (53%), Positives = 470/668 (70%), Gaps = 26/668 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AI +L +G++   K Q+LLGVTGSGKTFT+A VI+ +Q+P +V+A
Sbjct: 4   FELVSDYEPKGDQPEAIRKLSEGLNKGLKHQVLLGVTGSGKTFTVANVIQNVQKPTLVIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+SEF+ FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+SS+NE+IDR+R 
Sbjct: 64  HNKTLAAQLFSEFREFFPNNAVEYFVSYYDYYQPEAYLPTTDTYIEKDSSVNEEIDRLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SL+ER D IVVSSVS IY IGS + + +M V L+ GD V + +L ++L+   Y+R 
Sbjct: 124 SATKSLIERKDVIVVSSVSSIYNIGSPDEWRRMSVILRTGDEVGRSDLFAALINIHYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE---TI 377
           DI   +G+FR  GD+IE+FP+  ++   R+ +FG++I+ IS F P+TG+ I  V+   +I
Sbjct: 184 DIESAKGSFRSKGDTIEVFPAQ-DNHGVRIELFGDEIDRISSFDPVTGKTIDEVKEDNSI 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+V P+  +  A+  I++EL+ ++ +L  E R+LE+QRL QR  +DLEM+   G
Sbjct: 243 VIYPAKHFVMPQEEMVKALGSIEKELEGQVAKLVSENRILESQRLTQRAKFDLEMIRELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+  GR PG+PP +L E+ P+D LL +DESHVTIPQI GM+ GD  RK  L
Sbjct: 303 YCSGIENYSRHFDGRKPGDPPSSLLEFFPDDFLLVIDESHVTIPQIRGMHNGDRARKEAL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS  DNRPL + E++      I VSATP  +EL      +VEQIIRPTGLVDP
Sbjct: 363 INYGFRLPSAYDNRPLTYNEFHHKINQAIYVSATPADYEL-GISSAVVEQIIRPTGLVDP 421

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V IR    Q++D+  E+N   ++G R L+T LTKRMAEDLTEYL E  IRVRYMHS++ 
Sbjct: 422 VVFIRPVENQIDDLIGEVNKVTEKGYRTLVTTLTKRMAEDLTEYLLEMGIRVRYMHSDID 481

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRDLR G FDVLVGINLLREGLDIPE   VAILDADKEGFLRS+ SLIQT+GR
Sbjct: 482 TLERAEIIRDLRKGVFDVLVGINLLREGLDIPEVAFVAILDADKEGFLRSERSLIQTMGR 541

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM------- 730
           A+RN +  VILYA  +T SI+ A+ ET RRR+ QL +N+KH I PQ++ + +        
Sbjct: 542 ASRNADGYVILYAGKVTGSIEAALRETNRRRQIQLAYNEKHGIVPQTIHKALQRELVETE 601

Query: 731 --EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
             EV+  +L        ++ D   + ++       +  L  +MHLAA NL FE AA +RD
Sbjct: 602 YGEVVSEVL-------GVAEDLSDIEIADM-----VIELEAEMHLAAKNLEFERAAALRD 649

Query: 789 EIKRLKSS 796
            IK L+S+
Sbjct: 650 NIKELRST 657


>gi|302873269|ref|YP_003841902.1| excinuclease ABC, B subunit [Clostridium cellulovorans 743B]
 gi|307688564|ref|ZP_07631010.1| excinuclease ABC subunit B [Clostridium cellulovorans 743B]
 gi|302576126|gb|ADL50138.1| excinuclease ABC, B subunit [Clostridium cellulovorans 743B]
          Length = 658

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/655 (51%), Positives = 465/655 (70%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI  + + + + +K Q LLGVTGSGKTFTMA +IE +Q+P +V+A
Sbjct: 4   FKIVSEYKPTGDQPQAIESISERVLAGDKFQTLLGVTGSGKTFTMANIIEKVQKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP  AVEYFVSYYDYYQPEAYV +TDT+IEK++SIN++IDR+RH
Sbjct: 64  HNKTLAAQLCSEFREFFPDAAVEYFVSYYDYYQPEAYVAQTDTFIEKDASINDEIDRLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G+ + Y ++ + L+ G   ++ E++  L+  QY+R 
Sbjct: 124 SATAALFERKDVIIVASVSCIYGLGNPDEYRKLSLSLRKGMEKDRDEIMRKLIDMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +R TFRV GD ++IFP+  + V  +V  FG +I+ I EF  LTGQ +R ++ + I+
Sbjct: 184 DINFVRATFRVRGDILDIFPASSQKVGIKVEFFGEEIDRIREFDVLTGQILRELKHVLIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ + + T+  ++  I+ EL  R+ EL  E +LLEAQRL+QR  +D+EM+   G CQ
Sbjct: 244 PASHFASSKETVERSIGKIEAELDERVKELLAEEKLLEAQRLKQRTNFDIEMIREMGYCQ 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR + GRN GEPP TL ++ PED L+F+DESHVT+PQ+  MY GD  RK  L  Y
Sbjct: 304 GIENYSRIMDGRNKGEPPKTLIDFFPEDFLMFIDESHVTLPQVRAMYGGDRSRKEALVNY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+FEE+       + VSATP  +E +     + EQIIRPTGL+DP +E
Sbjct: 364 GFRLPCAYDNRPLKFEEFEEKLKQVVFVSATPAKYEFDHSTN-VAEQIIRPTGLLDPIIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+Y  I     +G RIL+T LTK+MAEDLT+YL E  ++  Y+HS+V T++
Sbjct: 423 VRPIDGQIDDLYSSIQETIVRGFRILVTTLTKKMAEDLTDYLKEMGVKTNYLHSDVTTID 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II++LR+G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS TSLIQT+GRAAR
Sbjct: 483 RMKIIKELRMGDFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSNTSLIQTVGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +SKVI+YAD IT S+   I ET RRR+ Q+++N+ HNI P ++ + I + I    + +
Sbjct: 543 NADSKVIMYADKITDSMSYTIKETERRRKIQIDYNEAHNITPTTIIKGIRDNIQISTIAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                ++    + ++S++  K  + SL K+M   A  L FE AA +RDEI +LK+
Sbjct: 603 EEAVYLT----EETMSQEDLKKKIASLEKEMKAVAKELQFERAAELRDEINKLKT 653


>gi|284049853|ref|ZP_06380063.1| excinuclease ABC subunit B [Arthrospira platensis str. Paraca]
 gi|291569150|dbj|BAI91422.1| excinuclease ABC subunit B [Arthrospira platensis NIES-39]
          Length = 665

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/659 (53%), Positives = 459/659 (69%), Gaps = 8/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P+GDQP AIAQL+  I S      LLG TG+GKTFT+A  I  + RP +V+A
Sbjct: 4   FELKAPFQPTGDQPLAIAQLINSIKSGHPKTTLLGATGTGKTFTIAATIAQLGRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKTASINDEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y    + L++G+  +Q++LL  L   QY R 
Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPTEYLNAAIPLRVGEDRDQRQLLRDLASIQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ ++++ET+ IY
Sbjct: 184 DTEITRGRFRVRGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEVLQSLETLNIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP   L+ A   I  ELK +L ELEK G+L EAQRL+QR  YDLEML   G C 
Sbjct: 243 PARHFVTPGDRLDAACDAIAAELKQQLAELEKAGKLWEAQRLDQRTRYDLEMLREVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L GR PG PP  L +Y P+D LL VDESHVT+PQI  MY GD  RK  L E+
Sbjct: 303 GVENYSRHLAGRLPGSPPECLVDYFPDDWLLVVDESHVTVPQIRAMYNGDQARKKVLIEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+       I+VSATPG WE+ Q QG ++EQ+IRPTG+VDP + 
Sbjct: 363 GFRLPSAADNRPLKSEEFWQKVKQCILVSATPGDWEIAQSQGQVIEQVIRPTGVVDPEIF 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI     +  R+L+T LTKRMAEDLTEY  +R IRVRY+HSE+++++
Sbjct: 423 VRPTTGQVDDLIAEIKERIPRNERVLVTTLTKRMAEDLTEYFQDRGIRVRYLHSEIQSIQ 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII+ L+ G+FDVL+G+NLLREGLD+P+  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RIEIIQSLQEGEFDVLIGVNLLREGLDLPQVSLVAILDADKEGFLRAERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V  + ILYAD +T S+  AI ET RRR  QLE+N+K+ I P+S+ +     I   L  D
Sbjct: 543 HVRGQAILYADNMTDSMSKAIAETNRRRTIQLEYNQKYGIIPKSIVKSSSNAILAFL--D 600

Query: 741 AA----TTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +    +  I +  QQ+  L  ++    ++ L  +M+ AA  L FEEAA+ RD I+ L+
Sbjct: 601 VSRRLNSQQIDLACQQVDDLPLEEIPTLIEQLEVRMNEAAQQLEFEEAAKFRDRIRILR 659


>gi|256371800|ref|YP_003109624.1| excinuclease ABC, B subunit [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008384|gb|ACU53951.1| excinuclease ABC, B subunit [Acidimicrobium ferrooxidans DSM 10331]
          Length = 667

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/658 (52%), Positives = 461/658 (70%), Gaps = 6/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y PSGDQP AI +L+  I S  +   LLG+TGSGK+ T+A  IE +QRP +V+A
Sbjct: 5   FEVHAPYRPSGDQPRAIDELVTSIESGNRFTTLLGITGSGKSATIAWTIERLQRPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+ F P N VEYFVSYYDYYQPEAY+P +DTYIEK+SSIN++IDR+RH
Sbjct: 65  PNKSLAAQLANEFRGFMPRNRVEYFVSYYDYYQPEAYIPSSDTYIEKDSSINDEIDRLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+GS  +Y   I+ +++G       ++  LV  QY+R 
Sbjct: 125 SATSALLTRRDVVVVASVSCIYGLGSPSAYEGQILPIEVGMDQPMGLVVRRLVAMQYQRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +E+ P++ E +  RV  FG+++E I      TG+ +R +E I ++
Sbjct: 185 DLELARGRFRVRGDVLEVHPAYEERIV-RVEFFGDEVERIVSVDQTTGEVLRELEDIVLF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY+     +  A++ I +EL  RL ELE  G+LLEAQRL  R   DLEML+  G C 
Sbjct: 244 PATHYLASPEVVERALRSISDELGERLRELESAGKLLEAQRLRMRTELDLEMLQEVGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR PG+ P TL +Y P+D L+ +DESHV +PQ+   Y GD  RK TL E+
Sbjct: 304 GIENYSRHLDGREPGQAPYTLLDYFPKDFLVVIDESHVGLPQLRAQYAGDRSRKETLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+    P  I +SATPG +E E   G  VE I+RPTGL+DP VE
Sbjct: 364 GFRLPSALDNRPLRFDEFLERVPQAIFMSATPGPFEREHA-GRTVELIVRPTGLLDPKVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    ++  R+L+T LTKRMAEDLTEY     +RVRY+HS ++TLE
Sbjct: 423 VRPTKGQIDDLLAEIRARVERDQRVLVTTLTKRMAEDLTEYFEGLGVRVRYLHSTIETLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVLVGINLLREGLD+PE GLVAI+DADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RIEIVRDLRLGVFDVLVGINLLREGLDLPEVGLVAIMDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV   VILYAD +T S+  AI ET RRR  Q ++N +H I P+SV  +I +++       
Sbjct: 543 NVEGTVILYADAVTPSMARAISETERRRSIQADYNARHGITPRSVSARIDDLVTE-RTRS 601

Query: 741 AATTNI---SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A T  +   +I+ +   ++ ++ +  + SLR++M  AA  L FEEAA++RD+I+ L++
Sbjct: 602 APTPTLGRRAIEERTAGMNPEQVRDVIDSLREEMERAATELRFEEAAKLRDDIRALEA 659


>gi|116327526|ref|YP_797246.1| excinuclease ABC subunit B [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331861|ref|YP_801579.1| excinuclease ABC subunit B [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280403|sp|Q04QJ9|UVRB_LEPBJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|122284674|sp|Q054D2|UVRB_LEPBL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|116120270|gb|ABJ78313.1| Helicase subunit of the DNA excision repair complex [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116125550|gb|ABJ76821.1| Helicase subunit of the DNA excision repair complex [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 666

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/662 (52%), Positives = 458/662 (69%), Gaps = 20/662 (3%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++ + Y P+GDQ  AI  +        +   L+GVTGSGKTFTMA+VI+ +  P +V
Sbjct: 3   SIFKIHSAYKPAGDQIKAIENIADSFQKGAEKVTLVGVTGSGKTFTMAQVIQNLGLPTLV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           ++ NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE+ID++
Sbjct: 63  LSHNKTLAAQLFREFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEEIDKL 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R  AT SLLER D ++VSSVSCIYG+GS E Y+  +V LK GD++E+  ++  L+  QY 
Sbjct: 123 RLRATSSLLEREDVVIVSSVSCIYGLGSPEEYTNSVVALKTGDTIERDAVIRKLLHIQYN 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RG FRV GDSIEI+P++  D   R+  FG++I+ IS   P+T Q I  +E   
Sbjct: 183 RNDIDFSRGNFRVRGDSIEIYPAYHTD-GIRIEFFGDEIDSISRINPITAQTILKLEKTY 241

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY   H++T  P +  A++ IK EL+ + +   K  +LLEA+R+  R  YD+EML+  G 
Sbjct: 242 IYPAKHFITSGPKVKVAIENIKAELEAQALFFRKNDKLLEAERIISRTNYDMEMLQEMGY 301

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+LTGR  GE P  L +Y   + LL VDESHVTIPQI GM+ GD  RK TL 
Sbjct: 302 CNGIENYSRHLTGRKAGERPACLIDYFQGEFLLIVDESHVTIPQIGGMFAGDKARKQTLV 361

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS +DNRPL FEE+  L P T+ VSATP  +E+E+    +VEQIIRPTGL+DP 
Sbjct: 362 DFGFRLPSALDNRPLNFEEFETLTPKTLYVSATPADYEMEKSSK-VVEQIIRPTGLLDPI 420

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+RS + Q+ED+  EI      G RIL+T LTK+M+EDLT+Y  E  ++V Y+HSEV+T
Sbjct: 421 VEVRSTKNQIEDLLVEIRKRIDVGERILITTLTKKMSEDLTDYYKEIGLQVAYLHSEVET 480

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L+R+ IIRDLR G +DVL+GINLLREGLDIPE  LVAILDADKEGFLR+  SLIQT+GRA
Sbjct: 481 LDRVAIIRDLRKGIYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLIQTVGRA 540

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----- 733
           ARNVN   ILYAD IT S+  AIDET RRR+ Q +HN K  I P ++++++ ++I     
Sbjct: 541 ARNVNGTAILYADKITDSMAKAIDETKRRRKIQEDHNLKFGITPLTIRKEVNDIIEREEK 600

Query: 734 ----DPILLEDAATTNISIDAQQLSLSKKKGKAHLKS-LRKQMHLAADNLNFEEAARIRD 788
               + ++LED          ++ +  K   K  LK  LR++M  AA  L+FE AA +RD
Sbjct: 601 KRTSEDLVLEDV--------EKKFNSKKFPNKEVLKDKLREEMMKAAKELDFERAAILRD 652

Query: 789 EI 790
           ++
Sbjct: 653 KM 654


>gi|326331625|ref|ZP_08197913.1| excinuclease ABC subunit B [Nocardioidaceae bacterium Broad-1]
 gi|325950424|gb|EGD42476.1| excinuclease ABC subunit B [Nocardioidaceae bacterium Broad-1]
          Length = 708

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/695 (49%), Positives = 467/695 (67%), Gaps = 32/695 (4%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + +  + +  F++ +DY PSGDQPAAIA++ K I    K  +LLG TG+GKT T+A   E
Sbjct: 4   VTDLERRVAPFKVVSDYQPSGDQPAAIAEITKRIQDGVKDVVLLGATGTGKTATVAWTAE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +V+ PNK LAAQ  +E +  FP NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SS
Sbjct: 64  QLQRPMLVLQPNKTLAAQFANELRQLFPDNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE+++R+RHSAT SLL R D IVVS+VSCIYG+G+ + Y   +++L++G+  ++  +L 
Sbjct: 124 INEEVERLRHSATNSLLTRRDVIVVSTVSCIYGLGTPQEYVDRMIRLRVGEEHDRDSILR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV+ QY R D+   RGTFRV GD++EIFP + E+ A R+  FG++IE +   + +TG+ 
Sbjct: 184 RLVEIQYTRNDLSFTRGTFRVRGDTLEIFPVY-EEHAVRIEFFGDEIERLMTLHAVTGEV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +   + + ++  +HYV     +  A+  I+ EL  +L   EK+G++LEAQRL  R TYD+
Sbjct: 243 LTEDQELYVFPATHYVAGPERMERAINGIEAELDQQLSTFEKQGKMLEAQRLRMRTTYDI 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   GSC  IENYS ++ GR  G  P  L +Y PED +L VDESHV +PQ+ GMY GD
Sbjct: 303 EMMRQVGSCSGIENYSMHIDGRERGSAPNCLLDYFPEDFVLVVDESHVAVPQVGGMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK  L E+GFRLPS  DNRPL++EE+      TI +SATPG +EL++  G  VEQIIR
Sbjct: 363 MSRKRNLVEHGFRLPSAQDNRPLKWEEFLERIGQTIYLSATPGDYELDKVGGDTVEQIIR 422

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DP V I+  + Q++D+  EIN    +  R+L+T LTK+M+EDLT+YL +  IR R
Sbjct: 423 PTGLIDPEVIIKPTKGQIDDLIGEINDRVAKNERVLVTTLTKKMSEDLTDYLLDAGIRTR 482

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSEV TL+RIE++RDLRLG++DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  S
Sbjct: 483 YLHSEVDTLKRIELLRDLRLGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSDKS 542

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT S++ AI+ET RRR  Q+ +N+ + I+PQ +++KI 
Sbjct: 543 LIQTIGRAARNVSGQVHMYADKITPSMESAIEETNRRRAIQMAYNEANGIDPQPLRKKIA 602

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKS------------------------ 766
           ++ D +  ED +T  +           + GK   K+                        
Sbjct: 603 DITDMLAREDESTQELLNTWAGTEAKGRAGKTSAKAPTPMLGDAAREARERGLVGLPSSD 662

Query: 767 -------LRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  L  QM  AA  L FE AAR+RDEI  LK
Sbjct: 663 LAQLIGDLTDQMKGAAAELQFEVAARLRDEISELK 697


>gi|302380398|ref|ZP_07268867.1| excinuclease ABC, B subunit [Finegoldia magna ACS-171-V-Col3]
 gi|302311802|gb|EFK93814.1| excinuclease ABC, B subunit [Finegoldia magna ACS-171-V-Col3]
          Length = 617

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/614 (53%), Positives = 446/614 (72%), Gaps = 4/614 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L  G+ + +  Q+L GVTGSGKTFTMA +I+ +QRP +V+A
Sbjct: 3   FKLHSKFKPTGDQPQAIDKLANGLENGKNHQILKGVTGSGKTFTMANIIQKVQRPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL SEF+ FFP NAVE+FVSYYDYYQPEAYV ++DTYIEK+SSINE++D++RH
Sbjct: 63  HNKTLAYQLASEFREFFPENAVEFFVSYYDYYQPEAYVVQSDTYIEKDSSINEELDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+VSSVSCIYG+G    Y  +++ L+ G   ++ E++  L+  QY R 
Sbjct: 123 SATMSLFERRDVIIVSSVSCIYGLGDPIDYENLVISLRPGMEKDRTEVMKKLIDIQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GDS++IFP+   + + R+  FG++I+ I+E   LTG+ +     + IY
Sbjct: 183 DINFTRGTFRVRGDSLDIFPASSGEKSVRIEFFGDEIDRITEIDALTGEIVGERNHVAIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T +  +  A+  I+EEL+ RL   +   +LLEAQRLEQR  YD+EML+  G C 
Sbjct: 243 PASHYATTQKKVEKAIVTIEEELEDRLKYFKDHNKLLEAQRLEQRTRYDIEMLKEMGFCT 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++ R PG  P TL +Y P+D +  +DESHVT+PQI GMY GD  RK +L +Y
Sbjct: 303 GIENYSRHMSQRKPGSRPYTLIDYFPKDFVTMIDESHVTVPQIGGMYEGDRSRKTSLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  +    I VSATPG +E  +    +VEQ+IRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLKFSEFESMMNQVIYVSATPGKYEKAKTNE-VVEQVIRPTGLLDPKIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN   ++G R+L+T LTK+M+EDLT YL + +I+V Y+HS++ T+E
Sbjct: 422 VRPTKGQIDDLVSEINKTIEKGERVLITTLTKKMSEDLTRYLEDLDIKVTYLHSDIDTIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR GK+DVLVGINLLREGLD+PE  L+AILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RMEIIRDLREGKYDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+Y DTIT+S+ +AI ET RRRE Q E+NK+HNI P ++ + + + I    +  
Sbjct: 542 NSNGHVIMYGDTITRSMDVAITETNRRREIQEEYNKEHNITPTTINKSVRKRIQNTFV-- 599

Query: 741 AATTNISIDAQQLS 754
            A  N + DA +++
Sbjct: 600 -AEENENYDANKVT 612


>gi|227877198|ref|ZP_03995272.1| excinuclease ABC subunit B [Lactobacillus crispatus JV-V01]
 gi|256848938|ref|ZP_05554372.1| excinuclease ABC subunit B [Lactobacillus crispatus MV-1A-US]
 gi|262045719|ref|ZP_06018683.1| excinuclease ABC, B subunit [Lactobacillus crispatus MV-3A-US]
 gi|312977728|ref|ZP_07789475.1| excinuclease ABC subunit B [Lactobacillus crispatus CTV-05]
 gi|227863252|gb|EEJ70697.1| excinuclease ABC subunit B [Lactobacillus crispatus JV-V01]
 gi|256714477|gb|EEU29464.1| excinuclease ABC subunit B [Lactobacillus crispatus MV-1A-US]
 gi|260573678|gb|EEX30234.1| excinuclease ABC, B subunit [Lactobacillus crispatus MV-3A-US]
 gi|310895467|gb|EFQ44534.1| excinuclease ABC subunit B [Lactobacillus crispatus CTV-05]
          Length = 676

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/659 (50%), Positives = 467/659 (70%), Gaps = 5/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + +P +V+ 
Sbjct: 10  FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIAKLNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L+ERND +VV+SVSCIYG+G  + Y++ ++ +  G+  ++  LL  LV  QY R 
Sbjct: 130 ATTSALMERNDVVVVASVSCIYGLGDPKEYARSVLMIHEGEEYDRNTLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+   + A+R+  FG++I+ I E   LTG+ I   E+I ++
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPAGNSNHAYRIEFFGDEIDRIVEVDSLTGEVIGERESISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L  A+  I +E+K+++ + E EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNDEQLRRALGAISKEMKLQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERTDH-KVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVGEINKRIDRHERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+QT+GR AR
Sbjct: 489 RMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRTAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N N +VI+YADTIT S++ AI  T RRR+ Q+E NK+H I P+++ + I +VI    P  
Sbjct: 549 NANGEVIMYADTITDSMRAAIKATKRRRKIQMEFNKEHGITPKTIIKPIQDVISITKPSS 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            ++  + + + D     L+ K+ K  + +L++QM  AA  L+FEEAA +RD I  L+ S
Sbjct: 609 EKEEKSDSFA-DLNFDELTAKQKKTMISNLQEQMQEAAKKLDFEEAANLRDAIMELQKS 666


>gi|295692552|ref|YP_003601162.1| uvrABC system protein b [Lactobacillus crispatus ST1]
 gi|295030658|emb|CBL50137.1| UvrABC system protein B [Lactobacillus crispatus ST1]
          Length = 681

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/659 (50%), Positives = 468/659 (71%), Gaps = 5/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + +P +V+ 
Sbjct: 10  FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIAKLNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L+ERND +VV+SVSCIYG+G  + Y++ ++ +  G+  ++  LL  LV  QY R 
Sbjct: 130 ATTSALMERNDVVVVASVSCIYGLGDPKEYARSVLMIHEGEEYDRNTLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+   + A+R+  FG++I+ I E   LTG+ I   ++I ++
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPAGNSNHAYRIEFFGDEIDRIVEVDSLTGEVIGERDSISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L  A+  I +E+K+++ + E EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNDEQLRRALGAISKEMKLQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERTDH-KVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVGEINKRIDRHERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+QT+GRAAR
Sbjct: 489 RMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N N +VI+YADTIT S++ AI  T RRR+ Q+E NK+H I P+++ + I +VI    P  
Sbjct: 549 NANGEVIMYADTITDSMRAAIKATKRRRKIQMEFNKEHGITPKTIIKPIQDVISITKPSS 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            ++  + + + D     L+ K+ K  + +L++QM  AA  L+FEEAA +RD I  L+ S
Sbjct: 609 EKEEKSDSFA-DLNFDELTAKQKKTMISNLQEQMQEAAKKLDFEEAANLRDAIMELQKS 666


>gi|148238416|ref|YP_001223803.1| excinuclease ABC subunit B [Synechococcus sp. WH 7803]
 gi|189038007|sp|A5GHU1|UVRB_SYNPW RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|147846955|emb|CAK22506.1| Helicase subunit of the DNA excision repair complex [Synechococcus
           sp. WH 7803]
          Length = 678

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/669 (52%), Positives = 455/669 (68%), Gaps = 16/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   Y P GDQP AI QL+ G++  E+ Q LLG TG+GKTFTMA VI    RPA+V+A
Sbjct: 4   FDLTAPYSPKGDQPTAIKQLVAGVNDGERYQTLLGATGTGKTFTMANVIAQTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G+++  +  L  LV  QY R 
Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGETLNIRGQLRELVNNQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I RG FR+ GD +EI P++ ED   RV +FG+++E I    P TG+ ++++E+I IY
Sbjct: 184 DTEIARGRFRMKGDVLEIGPAY-EDRLVRVELFGDEVEAIRYVDPTTGEILQSLESINIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L+TA++ I+ EL  RL  L  EG+LLEAQRLEQR  YDLEML   G C 
Sbjct: 243 PAKHFVTPKDRLDTAVQAIRSELTERLDFLNTEGKLLEAQRLEQRTKYDLEMLGQVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L GR PG  P  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L ++
Sbjct: 303 GVENYARHLAGREPGTAPECLIDYFPKDWLLIVDESHVTCSQLQAMYNGDQARKKVLIDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+      T+ VSATPG+WELE     + +Q+IRPTG++DP VE
Sbjct: 363 GFRLPSAADNRPLKGEEFWEKAHQTVFVSATPGNWELEVSGDEVAQQVIRPTGVLDPIVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI   A +  R+L+T LTKRMAEDLT+YL E  +RVRY+HSE+ ++E
Sbjct: 423 VRPTTGQVDDLLGEIRDRASKQQRVLVTTLTKRMAEDLTDYLAENEVRVRYLHSEIHSIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733
           +V    +LYAD +T S+  AI ET RRR  Q  +N+KH I P +  +K    I       
Sbjct: 543 HVEGVALLYADNMTDSMAKAISETERRRTIQQAYNEKHGIVPTAAGKKASNSILSFLELS 602

Query: 734 --------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
                   D  L++ A+    ++D     ++       +  L  +M  AA  L+FEEAA 
Sbjct: 603 RKLKTEGPDADLVQVASKAVEALDDDADGMALDALPELIDQLEMKMKEAAKKLDFEEAAN 662

Query: 786 IRDEIKRLK 794
           +RD IK+L+
Sbjct: 663 LRDRIKQLR 671


>gi|73748283|ref|YP_307522.1| excinuclease ABC subunit B [Dehalococcoides sp. CBDB1]
 gi|90110884|sp|Q3ZZK7|UVRB_DEHSC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|73659999|emb|CAI82606.1| excinuclease ABC, subunit B [Dehalococcoides sp. CBDB1]
          Length = 664

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/657 (52%), Positives = 463/657 (70%), Gaps = 6/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+  +GDQP A+ +L KG+ S    Q LLGVTGSGKTFTMA VI  + RP ++++
Sbjct: 4   FKIVSDFALTGDQPQAVEKLAKGLVSGLTDQTLLGVTGSGKTFTMANVIARVNRPTLIIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K F P N+VEYFVSYYDYYQPEAYVP+ D YIEK+S INE+ID++RH
Sbjct: 64  HNKTLAAQLYSEMKEFLPENSVEYFVSYYDYYQPEAYVPQKDMYIEKDSDINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATR+L ER D ++V+SVSCIYG+G  E Y   ++ LK G S  +  +L  LV  QY+R 
Sbjct: 124 AATRALFERRDVVIVASVSCIYGLGEPEEYRSFVLPLKKGQSFRRDLILRRLVDMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FR+ GD++EI P++ E++A RV  FG++IE I    P++G+ +  +E I IY
Sbjct: 184 DLDFSRGKFRLRGDTLEIQPAY-EELALRVEFFGDEIERIVSLDPVSGELLAGIEEINIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT    +  A+K I+ EL+ RL ELE EG++LEA RL+QR  YDLEM+E  G C 
Sbjct: 243 PAKHFVTSAEKMAEAIKSIQAELEDRLKELEAEGKMLEAARLKQRTNYDLEMMEQAGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L GR  G  P TL +Y PED LL VDESH+++PQI GMY GD  RK TL +Y
Sbjct: 303 GVENYSRHLAGRKAGSAPWTLLDYFPEDFLLIVDESHMSLPQIRGMYAGDSARKKTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL F+E+       I VSATPG +E E     +VEQ++RPTGL++P + 
Sbjct: 363 GFRLPSAMDNRPLSFDEFKARVKQAIYVSATPGPYEKEHSLQ-VVEQLVRPTGLLEPVMT 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ +E+     +  R+L+T LTK+M+E L +YL E  ++  Y+HSEV TLE
Sbjct: 422 VKPTVGQIDDLLEEVKKRVAKNERVLITTLTKKMSEKLADYLVEMGVKTHYLHSEVDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS+ +LIQT+GRAAR
Sbjct: 482 RIEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V+ +VI+YAD IT S+Q A+DE  RRR+ Q ++N+ HNI PQ +++ I ++ + I    
Sbjct: 542 HVDGQVIMYADKITGSMQRAMDEIIRRRKIQEDYNRLHNITPQGIRKAIKDINERI---R 598

Query: 741 AATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + T  +S    + + + ++  A L K L  QM  AA NL FE AA IRD +  L+++
Sbjct: 599 SVTAEVSGPEFRPTPTLREDIARLIKELESQMKKAAKNLEFERAALIRDRVVELRAA 655


>gi|218438740|ref|YP_002377069.1| excinuclease ABC subunit B [Cyanothece sp. PCC 7424]
 gi|226695481|sp|B7KC96|UVRB_CYAP7 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|218171468|gb|ACK70201.1| excinuclease ABC, B subunit [Cyanothece sp. PCC 7424]
          Length = 665

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/667 (52%), Positives = 464/667 (69%), Gaps = 18/667 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +Q  +  +GDQP AIAQL+  I    + Q LLG TG+GKTFT+A  IE + +P +
Sbjct: 1   MNLFHLQAPFQATGDQPQAIAQLVNSIEKGNRFQTLLGATGTGKTFTIAATIEKIGKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID 
Sbjct: 61  VLAHNKTLAAQLCNELRQFFPENAVEYFISYYDYYQPEAYIPVSDTYIEKSASINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D +VV+S+SCIYG+G    Y +  + L++G  + Q++LL  LV  QY
Sbjct: 121 LRHSATRSLFERRDVVVVASISCIYGLGMPSEYLKASIGLEVGKEINQRQLLRDLVSVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RG FR+ GD +E+ P++ ED   RV  FG++I+ I    P+TG  ++++E +
Sbjct: 181 SRNDLDLQRGRFRLRGDVLELVPAY-EDRVIRVEFFGDEIDAIRYLDPVTGNSLQSLERV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP   L  A + I+ EL+ RL ELEK+G+LLEAQRL QR  YDLE+L   G
Sbjct: 240 NIYPARHFVTPDDQLEAACQGIELELEDRLEELEKQGKLLEAQRLGQRTRYDLELLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSRYL GR PG+PP  L +Y P+D LL +DESHVTIPQ+ GMY GD  RK  L
Sbjct: 300 YCNGVENYSRYLAGREPGQPPECLIDYFPKDWLLVIDESHVTIPQLRGMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+ EE+       + VSATPG+WE+EQ QG ++EQIIRPTG++DP
Sbjct: 360 IEHGFRLPSAADNRPLKAEEFWEKVNQCVFVSATPGNWEIEQSQGQVIEQIIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    QV+D+  EI    ++  R+L+T LTKRMAEDLTEY  ER ++V+Y+HSE+ 
Sbjct: 420 EIFVRPTEGQVDDLLGEIKQRIKRKERVLITTLTKRMAEDLTEYFQERGVKVQYLHSEIS 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEI+++LR G+FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEILQNLREGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR++  + ILYAD +T S+  A++ET RRR  Q+ HNK+H I PQ +  +    I   L
Sbjct: 540 AARHIQGQAILYADNLTDSMIKAMEETERRRNIQMAHNKRHGITPQPIVTRSSNAILSFL 599

Query: 738 LEDAATTNIS--IDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                  +IS  ++AQQL         L  +K    +  L +QM  AA  L FEEAA+ R
Sbjct: 600 -------DISRRLNAQQLEKVYDQADELPLEKVPELIGQLEEQMKEAAKKLEFEEAAKYR 652

Query: 788 DEIKRLK 794
           D I+ L+
Sbjct: 653 DRIQHLR 659


>gi|167750402|ref|ZP_02422529.1| hypothetical protein EUBSIR_01376 [Eubacterium siraeum DSM 15702]
 gi|167656553|gb|EDS00683.1| hypothetical protein EUBSIR_01376 [Eubacterium siraeum DSM 15702]
 gi|291530927|emb|CBK96512.1| Excinuclease ABC subunit B [Eubacterium siraeum 70/3]
          Length = 652

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/657 (50%), Positives = 459/657 (69%), Gaps = 10/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++++Y P GDQP AI  L  G+   +K Q+LLGVTGSGKTFTMA +IE + RP +++A
Sbjct: 4   FVLKSNYKPMGDQPQAIDSLANGVLDGDKEQVLLGVTGSGKTFTMANIIEKVNRPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAY+P TD YIEK+S+IN++IDR+RH
Sbjct: 64  HNKTLAAQLCSEFKEFFPDNAVEYFVSYYDYYQPEAYIPSTDAYIEKDSAINDEIDRLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +GS E Y + ++ ++ G    + +++  LV+ QY+R 
Sbjct: 124 SATAALAERRDVIIVASVSCIYSLGSPEDYRENMLSIREGQERSRDDIIKRLVEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPS-HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           D+  IR  FRV GD +E+FP+    D A R+  FG++I+ ISE   +TG+  R    + I
Sbjct: 184 DMNFIRNKFRVRGDVLEVFPAGSTSDKAIRIEFFGDEIDRISEIDIVTGEVKRRFSHVAI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SHY+  +  L  ++  I+ E++ R+       +L+EAQR+EQR  YD+EML   G+C
Sbjct: 244 FPASHYIVSKARLENSLTEIENEMEERVKFFTDNHKLIEAQRIEQRTRYDMEMLREIGTC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           + +ENYSR L GR PG  P TL  + P+D L+F+DESHVT+PQ+ GMY GDF RK  L +
Sbjct: 304 KGVENYSRVLAGRAPGSSPITLMHHFPKDFLMFIDESHVTLPQVRGMYGGDFARKKNLVD 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS  DNRP+ F+E+  +    I VSATPG +E         EQ+IRPTGL+DP +
Sbjct: 364 YGFRLPSAYDNRPMNFDEFTSMINQVIYVSATPGEYEKSHAVN-TAEQVIRPTGLLDPII 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EI+    Q+ED+Y EIN   ++G  +L+T LTK+MAEDLT Y  +  +++RYMH ++ ++
Sbjct: 423 EIKPVAGQIEDLYSEINERTKKGECVLITTLTKKMAEDLTAYYEKLGVKIRYMHHDIDSI 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLR+  FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAA
Sbjct: 483 ERMEIIRDLRMHVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   KVI+YADT+T S++ A+ ET RRRE Q+++N++H I P+++ + +  V++    +
Sbjct: 543 RNAEGKVIMYADTVTDSMEKAVTETNRRREIQMKYNEEHGITPKTIVKDVRAVLEISSGK 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D          ++   +K + +A +K    +M  AA  L+FE AA +RD+IK L+ S
Sbjct: 603 DK--------GKKRKYTKAEREALIKQYTAEMKNAAKLLDFEHAAYLRDKIKELQES 651


>gi|312880241|ref|ZP_07740041.1| Excinuclease ABC subunit B [Aminomonas paucivorans DSM 12260]
 gi|310783532|gb|EFQ23930.1| Excinuclease ABC subunit B [Aminomonas paucivorans DSM 12260]
          Length = 672

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/650 (52%), Positives = 454/650 (69%), Gaps = 12/650 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++  D+ P+GDQP AI  L++G       Q LLGVTGSGKT+TMA+V++ +QRP +VMA
Sbjct: 5   FRLVADWDPAGDQPEAIEALVRGFEGGLSRQTLLGVTGSGKTYTMAQVVQRLQRPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAV+YFVSYYDYYQPEAY+P  D YIEK++SINE+I+++R 
Sbjct: 65  HNKTLAAQLYSEFKGFFPENAVQYFVSYYDYYQPEAYMPAQDLYIEKDASINERIEKLRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T++LLER D +VV+SVSCIYG+G  ++Y + I + ++G++  +K  L  L+   Y+R 
Sbjct: 125 STTKALLERRDVLVVASVSCIYGLGKRKNYEEAIFRFQVGETWPRKRFLERLLANYYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+    G FRV GD +EI+P++  D A RVS   ++I+ I E  P++G+ +   +   ++
Sbjct: 185 DVAFTPGVFRVRGDLLEIYPAY-SDTALRVSFLDDEIDRIDEIDPVSGKTLLRKDRGAVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HYVT    +  AM+ I++ELK  L +L   GRLLEAQRLE R  YD+EML+  G C 
Sbjct: 244 PAQHYVTSPDAIAQAMEKIEQELKAHLEDLRSRGRLLEAQRLESRTRYDMEMLQEVGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  GE P TL ++ P+D LLF+DESH+TIPQI GMY GD  RK  L E+
Sbjct: 304 GIENYSRFLDGREVGETPGTLMDFFPQDYLLFLDESHITIPQIRGMYNGDRARKEVLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPLRFEE+       + VSATPG +E+ Q    +VEQ++RPTG+++P VE
Sbjct: 364 GFRLPSCLDNRPLRFEEFESFMGQALFVSATPGDYEI-QTSARVVEQLVRPTGVLEPQVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D+ +E+ L A++G R L+T LTKR AEDL EY  E  I+VRY+HSE+ T E
Sbjct: 423 VRPATGQVDDLLEELRLVAERGDRALVTTLTKRSAEDLAEYFAELGIQVRYIHSELDTFE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  +++DLR G F VLVG+NLLREGLD+PE  LVAIL+AD+EG+LRS  SLIQ IGRAAR
Sbjct: 483 RAALLKDLRQGVFGVLVGVNLLREGLDLPEVSLVAILEADREGYLRSHRSLIQMIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVILY D +T S++LA++ET RRR  Q   N++  I P +V+++I  ++   LLED
Sbjct: 543 NEAGKVILYGDRVTDSMRLAVEETQRRRRVQETFNRERGIVPTTVRKEIKSLLPQELLED 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                     Q+    ++KG    K L + M  A + L+FEEAA +RD+I
Sbjct: 603 ----------QEERTPQRKGSVDRKELERMMWAAVERLDFEEAAALRDQI 642


>gi|325282776|ref|YP_004255317.1| UvrABC system protein B [Deinococcus proteolyticus MRP]
 gi|324314585|gb|ADY25700.1| UvrABC system protein B [Deinococcus proteolyticus MRP]
          Length = 678

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/656 (51%), Positives = 464/656 (70%), Gaps = 10/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ +++ PSGDQP AI  L+ G+ S  + Q LLG TG+GKT++MAKVIE  QRPA++MA
Sbjct: 9   LKVHSEFQPSGDQPTAIRTLVDGLESGLRFQTLLGATGTGKTYSMAKVIEETQRPALIMA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK+L AQL +EF+ FFP NAVE+F+SYYDYYQPEAYVP  D +IEK++SIN++I+R+RH
Sbjct: 69  PNKVLTAQLAAEFREFFPDNAVEFFISYYDYYQPEAYVPGKDLFIEKDASINQEIERLRH 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S TRSLL R D IVV+SVS IYG+G    Y+ + + LK+G+ V ++ ++  LV  QY+R 
Sbjct: 129 STTRSLLTRRDVIVVASVSAIYGLGDPAEYTALNLVLKVGEEVGREAIIERLVGMQYERN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI ++ G FR  G+ +E++ ++ E    R+ ++G+++E IS   PLTG +I +++   +Y
Sbjct: 189 DIELLPGRFRAKGEMVEVWAAYDEQPT-RIELWGDEVERISLVDPLTGDRITDMDGTVVY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HYV+    +  A+  I++EL+ RL      G+LLEAQRL++R  YDLEML   G C 
Sbjct: 248 PAKHYVSGAGNIERAIGGIEKELEERLEYFMSTGKLLEAQRLKERTLYDLEMLRVLGHCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P T+ +Y P+D + F+DESHVT+ QI GM  GD  RK TL ++
Sbjct: 308 GIENYSRHIDGRRPGETPYTMLDYFPDDFITFIDESHVTVSQIGGMANGDRARKQTLVDH 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL  +E+       + VSATPG +E E    I  +QIIRPTGLVDPPV 
Sbjct: 368 GFRLPSAMDNRPLNLDEFWAKTGQVVFVSATPGPFEREHSDQI-ADQIIRPTGLVDPPVT 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + QV+D+   +   A  G R L+T LTKRMAEDLTEYL E+ +R RYMHS++ ++E
Sbjct: 427 VRPIQGQVDDLLGRVRERAAAGERTLVTTLTKRMAEDLTEYLLEKGVRARYMHSDIDSVE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  IIRDLRLG +DVLVGINLLREGLD+PE  LVAILDADK GFLRS+ SLIQTIGRAAR
Sbjct: 487 RQVIIRDLRLGHYDVLVGINLLREGLDLPEVSLVAILDADKPGFLRSERSLIQTIGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739
           NVN +VILY D +T ++Q A+DET RRREKQL +N++H I P++V + + +VI    +E 
Sbjct: 547 NVNGEVILYGDNVTPAMQFAMDETLRRREKQLAYNEEHGITPRTVSKSVRDVIRGEEVEG 606

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + ++ N+  D + L+       A L  L   M  A+++L+FE AA +RD+I+ +++
Sbjct: 607 EISSENVGDDREALT-------AQLTELELSMWQASEDLDFELAASLRDQIRAIEA 655


>gi|313679222|ref|YP_004056961.1| excinuclease ABC subunit b [Oceanithermus profundus DSM 14977]
 gi|313151937|gb|ADR35788.1| Excinuclease ABC subunit B [Oceanithermus profundus DSM 14977]
          Length = 683

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/647 (52%), Positives = 457/647 (70%), Gaps = 9/647 (1%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P GDQP AI QL++G  S  + Q LLG TG+GKT TMAKVIEA+ RP +VMAPNK+LAAQ
Sbjct: 24  PRGDQPKAIRQLVEGFASGLRYQTLLGATGTGKTVTMAKVIEALGRPTLVMAPNKVLAAQ 83

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L +EF+  FP NAVEYF+SYYDYYQPEAYVP  D +IEK++SIN +I+R+RHS T+SLL 
Sbjct: 84  LAAEFRELFPENAVEYFISYYDYYQPEAYVPGRDLFIEKDASINPEIERLRHSTTQSLLT 143

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           R D IVV+SVS IYG+GS E Y  M + L++G  + ++E+L  LV+  Y R DI +  G 
Sbjct: 144 RRDVIVVASVSAIYGLGSPEDYYAMHLVLRVGQVMRREEILERLVELSYDRNDIDLQPGR 203

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           FR  G+ IE++P++  +   R+ ++G++I+ I   +P++G++   ++T+ +   +HY TP
Sbjct: 204 FRAKGEVIEVWPAYGTEPV-RIELWGDEIDRIHTVHPISGERGAELDTLMLMPATHYATP 262

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
              L  A++ I+ ELK R+ E EK G+LLEAQRL +R  YDLE+L   G C  IENY+R+
Sbjct: 263 EERLRPAIQAIEAELKARVAEFEKAGKLLEAQRLRERTLYDLELLRLMGHCPGIENYARH 322

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
           L+GR PGEPP TL +Y PED + F+DESHVT+PQI GMY GD+ RK  L EYGFRLPS +
Sbjct: 323 LSGRAPGEPPYTLLDYFPEDFVTFIDESHVTVPQIRGMYNGDYARKKVLVEYGFRLPSAL 382

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           DNRPL+ +E+       + VSATPG  ELE   G +VEQIIRPTGL+DP V ++ A  Q+
Sbjct: 383 DNRPLKLDEFLERTGQMVFVSATPGPEELEMS-GQVVEQIIRPTGLLDPKVTVKPAEGQM 441

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           ED+   I   A +  R+L+TVLTKRMAEDLT YL E  +R RYMH E+   ER  ++RDL
Sbjct: 442 EDLMAAIKERAARDERVLVTVLTKRMAEDLTAYLSEHGLRARYMHHELDAFERQALLRDL 501

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           RLG FDVLVGINLLREGLD+PE  LVAILDADK GFLRS+ SLIQTIGRAARN   +V L
Sbjct: 502 RLGHFDVLVGINLLREGLDLPEVSLVAILDADKTGFLRSERSLIQTIGRAARNAGGEVYL 561

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           YA+ ++++++ A++ET RRR  Q  +N++HNI P+++ + +  ++ P   E+A     ++
Sbjct: 562 YAEEVSEAMKAAVEETNRRRAVQEAYNREHNITPRTIDKSVRRMVKPEDFEEAPEPAAAV 621

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           D ++L       K  +  L   M  A+ +L+FE AA +RD+++ L++
Sbjct: 622 DEEEL-------KRQIADLELAMWSASQDLDFERAAELRDQLRALEA 661


>gi|257452344|ref|ZP_05617643.1| excinuclease ABC subunit B [Fusobacterium sp. 3_1_5R]
 gi|317058887|ref|ZP_07923372.1| excinuclease ABC subunit B [Fusobacterium sp. 3_1_5R]
 gi|313684563|gb|EFS21398.1| excinuclease ABC subunit B [Fusobacterium sp. 3_1_5R]
          Length = 660

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/660 (51%), Positives = 473/660 (71%), Gaps = 11/660 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++   Y P+GDQP AI +L+K +  + + Q+LLGVTGSGKTFT+A VIE +QRP +++
Sbjct: 1   MFRLCAKYQPTGDQPIAIEKLVKSLERKNRDQVLLGVTGSGKTFTIANVIEKVQRPTLII 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E+K+FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+S++NE+ID++R
Sbjct: 61  APNKTLAAQLYQEYKSFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSAVNEEIDKLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           ++AT +L+ R D I+V+SVS IYG+GS E Y +M + + +   + + +L+  L+  +Y+R
Sbjct: 121 NAATAALIMRKDVIIVASVSAIYGLGSPEIYKKMTIPIDLKTGISRSKLIERLIALRYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIK 378
            D+  +RGTFRV GD ++I+PS+LE   +R+  +G+D+E ISE + LTG+KI+ N+E I 
Sbjct: 181 NDMNFVRGTFRVKGDVVDIYPSYLE-TGYRLEFWGDDLEAISEIHTLTGEKIKKNLERIV 239

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IYA + Y+T    L   +  I+E+    + + +  G+LLEAQRL+QR+ YD+EM++  G 
Sbjct: 240 IYAATQYITEEEDLERIITEIREDQVREVKQFQDSGKLLEAQRLQQRVDYDIEMIKEIGY 299

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENY+RYL G+ PGE P TL +Y PE+ LL +DESHV +PQI GMY GD  RK TL 
Sbjct: 300 CKGIENYARYLAGKLPGETPNTLLDYFPENFLLVLDESHVGVPQIRGMYNGDISRKTTLV 359

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E GFRL + +DNRPL+F+E+      TI VSATPG +E++Q    +VEQ+IRPTG++DP 
Sbjct: 360 ENGFRLKAALDNRPLQFDEFRARTGQTIYVSATPGDYEIQQSGSSVVEQLIRPTGILDPF 419

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R  + QV+D+ +EI+    +  R+L+T LTK+MAE+LTEY  E  ++VRYMHS+V T
Sbjct: 420 IEVRPTKGQVDDLLEEIHKRVVKKQRVLVTTLTKKMAEELTEYYLELGVKVRYMHSDVDT 479

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L+RIEII+ LR G+ DVLVGINLLREGLDIPE  LVAIL+ADKEGFLRS+ SLIQTIGRA
Sbjct: 480 LDRIEIIKLLRKGEIDVLVGINLLREGLDIPEVSLVAILEADKEGFLRSRRSLIQTIGRA 539

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME---VIDP 735
           ARNV  +VILY D +T S+ LA++ET RRR  Q  +N  H I P+++ ++I E    +D 
Sbjct: 540 ARNVEGRVILYGDVMTDSMALAMEETKRRRTIQENYNLLHGIEPEAIIKEIAEEMIQLDY 599

Query: 736 ILLEDAATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            + E+A +            + K+  K H K ++      +  L+FE+A  +RDE+K L+
Sbjct: 600 GISEEAFSKKSKKKFHSKEEIEKEIAKCHKKIVK-----LSKELDFEQAILVRDEMKLLQ 654


>gi|238917729|ref|YP_002931246.1| excinuclease ABC subunit B [Eubacterium eligens ATCC 27750]
 gi|238873089|gb|ACR72799.1| excinuclease ABC subunit B [Eubacterium eligens ATCC 27750]
          Length = 689

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/650 (52%), Positives = 455/650 (70%), Gaps = 1/650 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ P GDQP AI  L KG     + + L+GVTGSGKTFTMA +I+ +Q+P ++++
Sbjct: 27  FVLHSDFKPMGDQPQAIEALTKGFEEGNQFETLVGVTGSGKTFTMANIIQNVQKPTLIIS 86

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP++DTYI K+SSIN++ID++RH
Sbjct: 87  HNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQSDTYIAKDSSINDEIDKLRH 146

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ERND I+V+SVSCIYG+G+   Y  M++ L+ G   ++ + +  L+  QY R 
Sbjct: 147 SATAALSERNDVIIVASVSCIYGLGAPVDYKNMVISLRPGMEKDRDDCIRKLIDIQYVRN 206

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD +E++PS     A RV  FG++++ ISE   LTG+    +E I I+
Sbjct: 207 DQDFKRGTFRVRGDVVEVYPSSSSGDAIRVEFFGDEVDRISEIDSLTGEVKGVLEHIAIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHYV  +  ++ A++ IK EL  R+   + E +LLEAQR+E+R  +D+EM++ TG C 
Sbjct: 267 PNSHYVVEKEKMDAAIENIKAELAERVKYFKSEDKLLEAQRIEERTNFDIEMMQETGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L G   G PP TL +Y P+D L+ VDESH+TIPQI GMY GD  RK TL +Y
Sbjct: 327 GIENYSRHLAGLPAGCPPYTLMDYFPDDFLIIVDESHITIPQIRGMYAGDQSRKTTLVDY 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F E+       + VSATP ++E E  + +  EQ+IRPTGL+DP + 
Sbjct: 387 GFRLPSAKDNRPLNFSEFESKISQMLFVSATPSTYEAEH-ELMRTEQVIRPTGLLDPEIT 445

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+  EIN    +  ++L+T LTKRMAEDLT+YL E  IRV+Y+H+++ TLE
Sbjct: 446 VKPIEGQIDDLISEINKETAKKNKVLVTTLTKRMAEDLTDYLKEAGIRVKYLHADIDTLE 505

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++TSLIQTIGRAAR
Sbjct: 506 RQKIIRDMRLDGFDVLVGINLLREGLDIPEISLVAILDADKEGFLRTETSLIQTIGRAAR 565

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT+S++ AI ET RRR+ Q ++N +H I PQ++K+ + ++I      +
Sbjct: 566 NAEGHVIMYADKITESMEKAISETERRRKIQQDYNDEHGITPQTIKKAVRDLISISKAAE 625

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
               +  +     S+S K+ +     + K M  AA  LNFEEAA++RD++
Sbjct: 626 PGDASGKLKVDYESMSIKELEKVKTQVEKNMRKAAAELNFEEAAQLRDKM 675


>gi|300865528|ref|ZP_07110313.1| excinuclease ABC subunit B [Oscillatoria sp. PCC 6506]
 gi|300336471|emb|CBN55463.1| excinuclease ABC subunit B [Oscillatoria sp. PCC 6506]
          Length = 667

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/664 (53%), Positives = 460/664 (69%), Gaps = 17/664 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q  + P+GDQP AIAQL  G+ + ++ Q LLG TG+GKTF++A VIE + RP +V+A
Sbjct: 5   FYLQAPFEPTGDQPKAIAQLTSGVLAGDRFQTLLGATGTGKTFSIAAVIEKVGRPTLVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP+NAVEYFVSYYDYYQPEAY+  TDTYIEK ++IN++ID +RH
Sbjct: 65  HNKTLAAQLCNELRGFFPNNAVEYFVSYYDYYQPEAYIAVTDTYIEKTAAINDEIDMLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  +  ++G  V Q++LL  LV  QY R 
Sbjct: 125 SATRSLFERRDAIVVASISCIYGLGMPAEYLKAAIPFQVGTEVNQRQLLRDLVNIQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +EI P++ ED   R+  FG++I+ I    P++G  I++VE + IY
Sbjct: 185 DLDLGRGKFRVKGDVLEIGPAY-EDRIIRIEFFGDEIDAIRYVDPVSGGIIQSVEALNIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT    L  A + I+ E++  + EL+K G+L+EAQRLEQR  YDLEML   G C 
Sbjct: 244 PARHFVTAEDKLEAACQAIEIEIEDSVEELKKAGKLVEAQRLEQRTRYDLEMLREVGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L GRN GEPP  L +Y P+D LL +DESHVT+PQ+ GMY GD  RK  L E+
Sbjct: 304 GVENYSRHLAGRNAGEPPECLIDYFPKDWLLVIDESHVTVPQLRGMYNGDQARKKVLIEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+       I VSATPG+WE+E  +  + +Q+IRPTGL+DP + 
Sbjct: 364 GFRLPSAADNRPLKAEEFWEKVNQCIFVSATPGNWEIEISESRVADQVIRPTGLIDPEIY 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI        R L+T LTKRMAEDLTEYL ER IRVRY+HSE++++E
Sbjct: 424 VRPTEGQIDDLLGEIKERVLLQERTLVTTLTKRMAEDLTEYLQERGIRVRYLHSEIQSIE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI++ LR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEILQSLRDGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V  + ILY D +T S+  AIDET RRR  QL +NK H I PQS+ +K  +  + IL   
Sbjct: 544 HVRGQAILYGDNLTDSMIKAIDETDRRRGIQLAYNKMHGITPQSIAKKSSK--NAIL--- 598

Query: 741 AATTNIS--IDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A  ++S  +++Q L         LS ++    +  L  QM  AA  + FEEAA+ RD I
Sbjct: 599 -AFLDVSRRLNSQHLETVYEQIDELSLEEIPELIGQLEVQMKEAAKKMEFEEAAKFRDRI 657

Query: 791 KRLK 794
           K L+
Sbjct: 658 KHLR 661


>gi|309777688|ref|ZP_07672638.1| excinuclease ABC subunit B [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914592|gb|EFP60382.1| excinuclease ABC subunit B [Erysipelotrichaceae bacterium 3_1_53]
          Length = 654

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/594 (55%), Positives = 429/594 (72%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + +DY P GDQP AI +L+ GI   +K Q+LLG TG+GKTFT++ VI  + +P +V 
Sbjct: 5   LFDLVSDYQPQGDQPKAIRELVNGIKEGKKQQVLLGATGTGKTFTISNVIAQVNKPTLVF 64

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP+N VEYFVS +DYYQPEAY+P +DTYI+K ++ N ++D +R
Sbjct: 65  AHNKTLAGQLYSEFKEFFPNNRVEYFVSNFDYYQPEAYIPSSDTYIDKNATTNIELDMLR 124

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +A  S+LER D I+++SV+CIYG  + E Y +M   +++GD +++KEL+  LV +QY R
Sbjct: 125 MAAVNSILERRDTIIIASVACIYGASNPEQYREMFFSIRVGDIIDRKELMGKLVARQYTR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ ++RGTFRV GD IE+ P H +    R+ MF ++IE I E  PLTG+ +       +
Sbjct: 185 NDMDLLRGTFRVRGDVIEVAPGHTDSFILRIEMFDDEIERICEVDPLTGKVLNAYTVYVV 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  S Y T +  +N A   I+EEL  RL  LE EG+LLE QRLEQR  YD+E L   G C
Sbjct: 245 YPASGYATKQEIINRAANTIEEELADRLQVLENEGKLLEKQRLEQRARYDIEALREFGVC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR++ GR PGE P TLF+Y P+D LL VDESHV++PQI GMY GD  RK TL  
Sbjct: 305 PGIENYSRHIDGRKPGERPYTLFDYFPDDFLLVVDESHVSLPQIRGMYNGDRARKETLVN 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP+RFEE+  +    I VSATPG++ELEQ +G I+EQIIRPTGL+DP V
Sbjct: 365 YGFRLPSALDNRPMRFEEFEKMINQAIFVSATPGNYELEQTKGEIIEQIIRPTGLLDPVV 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R  + Q++D+ DEI    ++  R L+T LT RMAEDLT YL   + +V ++H EVKT+
Sbjct: 425 TVRPTQGQIDDLVDEIRTRIEKNERTLITTLTVRMAEDLTSYLKGMDFKVAWLHHEVKTI 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIRDLR GK+DVL+GINLLREGLDIPE  L+ ILDADKEGFLRS+ SLIQ IGRAA
Sbjct: 485 ERTEIIRDLRKGKYDVLIGINLLREGLDIPEVSLITILDADKEGFLRSERSLIQIIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           RN + +VI+YAD +T S+Q A+DET RRRE Q+ +NK+H I P+++ + I EV+
Sbjct: 545 RNAHGQVIMYADKVTDSMQKALDETARRREIQIAYNKEHGITPKTIMKPIHEVV 598


>gi|282851455|ref|ZP_06260820.1| excinuclease ABC, B subunit [Lactobacillus gasseri 224-1]
 gi|282557423|gb|EFB63020.1| excinuclease ABC, B subunit [Lactobacillus gasseri 224-1]
          Length = 643

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/636 (52%), Positives = 443/636 (69%), Gaps = 2/636 (0%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           +  G    EK Q+L G TG+GKTFTMA VI  + +P +V++ NK L  QLY EFK FFP 
Sbjct: 1   MTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVISHNKTLVGQLYGEFKEFFPK 60

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH  T  L+ RND IVV+SVS
Sbjct: 61  NAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRHKTTSDLMSRNDVIVVASVS 120

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
           CIYG+G    Y+  +V +  G  + +  LL  LV  QY R DI   RG FRV GD +EIF
Sbjct: 121 CIYGLGDPREYAASVVSISEGQEISRDVLLRDLVNIQYDRNDIDFQRGRFRVRGDVVEIF 180

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P+   D A+RV  FG++I+ I E   LTG+ I   E + I+  +H+VT    +  A+  I
Sbjct: 181 PAGYSDHAFRVEFFGDEIDRIVEVNSLTGEVIGEREQVSIFPATHFVTNEQIMQRALASI 240

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
           K+E+ +++ + E EG+LLEAQR++QR TYD+EM+   G    IENYSR++ GR  G+PP 
Sbjct: 241 KDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTNGIENYSRHMEGRKAGQPPH 300

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519
           TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +YGFRLPS +DNRPL+ EE+ 
Sbjct: 301 TLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDYGFRLPSALDNRPLKLEEFE 360

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
                 + VSATPG +EL Q     VEQIIRPTGL+DP +E+R  + Q++D+  EIN   
Sbjct: 361 KHVNQIMYVSATPGDYELNQTDH-KVEQIIRPTGLLDPEIEVRPIKGQIDDLVGEINKRI 419

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLER+EIIRDLRLGKFDVL+GI
Sbjct: 420 DRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLERLEIIRDLRLGKFDVLIGI 479

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           NLLREG+D+PE  LVAILDADKEGFLRS   L+QTIGRAARN N KVI+YAD+IT S++ 
Sbjct: 480 NLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAARNSNGKVIMYADSITDSMRE 539

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI-DAQQLSLSKK 758
           AID T RRR  Q++ NK+H I P+++ + I +VI      D      S  D     L+KK
Sbjct: 540 AIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSDEKENKESFADLNFDELTKK 599

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + +  +K+L  QM  AA  L+FEEAA +RD I  L+
Sbjct: 600 QKQTMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLQ 635


>gi|309791541|ref|ZP_07686040.1| excinuclease ABC subunit B [Oscillochloris trichoides DG6]
 gi|308226401|gb|EFO80130.1| excinuclease ABC subunit B [Oscillochloris trichoides DG6]
          Length = 668

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/663 (50%), Positives = 469/663 (70%), Gaps = 9/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q  Y P+GDQP AIAQL+ G+ +  + Q LLG TG+GKTF MA++ E  QRP +V+A
Sbjct: 3   FRVQAPYQPTGDQPQAIAQLVAGLQAGYRHQTLLGATGTGKTFVMAQIFEQAQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L +QL++EF++F P  AVE F+SYYD Y PEAYVP  D YIEKE+SINE+IDR+RH
Sbjct: 63  HNKTLVSQLWAEFRDFLPDAAVEMFISYYDEYTPEAYVPSKDLYIEKEASINEEIDRLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++L  R D ++V+SVS I+G+GS + Y Q+++ ++ G+   + +LL  L+  Q++R 
Sbjct: 123 AATQALFTRRDVLIVASVSAIFGLGSPQDYGQVVIPIRSGEVRNRDKLLRQLIDLQFERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD+++I P++ E  A R+  +G++IE I E  PLTG+ +     + IY
Sbjct: 183 DIDFHRGTFRVRGDTLDILPANSE-TAVRIEFWGDEIERIVEIDPLTGEILLTRTAVDIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT +  L  A+  I++EL  RL +LE  G+ LEA RL+QR  YDLEML   G C 
Sbjct: 242 PAKHFVTTKDKLAAAVLSIQDELGERLRDLEAAGKNLEAARLKQRTMYDLEMLGEVGYCS 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR+PG+ P TL +Y P+D LLF+DESH+++PQ+ GMY+GD  RK TL ++
Sbjct: 302 GIENYSRHMDGRSPGQTPWTLLDYFPDDFLLFIDESHISLPQVRGMYKGDRSRKETLVDF 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       I VSATPG +E EQ Q I VEQIIRPTGLVDP +E
Sbjct: 362 GFRLPSALDNRPLQFDEFAEHVYQAIYVSATPGPYEREQSQQI-VEQIIRPTGLVDPIIE 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R ++ Q++D+  EI L   +G R L+T LTKRMAEDL +YL E  +R  Y+H+++ TLE
Sbjct: 421 VRPSKGQIDDLVAEIRLRVTKGQRALVTTLTKRMAEDLADYLKEVGVRTMYLHADIDTLE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG +D +VGINLLREGLD+PE  L+AILDADKEG+LRS+TSLIQ IGRAAR
Sbjct: 481 RVEILRDLRLGVYDTVVGINLLREGLDLPEVSLIAILDADKEGYLRSETSLIQIIGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738
           ++  +VI+YADTITKS+  AI ET RRR+ Q+ HN +HNI P  + + + ++ D +  + 
Sbjct: 541 HLEGRVIMYADTITKSMDAAIRETQRRRDIQIAHNMRHNITPVGISKGVRDLSDRLRKMA 600

Query: 739 EDAATTNI-----SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           E+     +     +  A    L +++    +K L KQM  AA +L FE+AA +RD+I  L
Sbjct: 601 EERGEYQVQSRDDTAHAIVHELPREEIHKLIKDLEKQMKQAAKDLAFEKAAALRDQIMEL 660

Query: 794 KSS 796
           + +
Sbjct: 661 RKT 663


>gi|260102499|ref|ZP_05752736.1| excision endonuclease subunit UvrB [Lactobacillus helveticus DSM
           20075]
 gi|260083704|gb|EEW67824.1| excision endonuclease subunit UvrB [Lactobacillus helveticus DSM
           20075]
 gi|328461826|gb|EGF34052.1| excinuclease ABC subunit B [Lactobacillus helveticus MTCC 5463]
          Length = 682

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/659 (50%), Positives = 464/659 (70%), Gaps = 4/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + +P +V+ 
Sbjct: 10  FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIANLNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L+ERND IVV+SVS IYG+G  + Y++ ++ +  G   ++  LL  LV  QY R 
Sbjct: 130 ATTSALMERNDVIVVASVSSIYGLGDPKEYARSVLMIHEGQEYDRNVLLRDLVNLQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   + A+R+  FG++I+ I E   LTG+ I   E+I ++
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGNSNHAYRIEFFGDEIDRIVEIDSLTGEVIGERESISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L  A+K I +E+K+++ + E EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNDDQLRRALKAISKEMKVQVKKFEGEGKLLEAERIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L  +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLTLIDESHATMPEIRAMYNGDRNRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVHQILYVSATPGDYELERTNH-KVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+V+Y+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVQYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+QT+GRAAR
Sbjct: 489 RMKILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N N +VI+YADTIT S++ AI+ T RRR+ Q E NK+H I P+++ + + +VI    P  
Sbjct: 549 NANGEVIMYADTITDSMRAAINATKRRRKIQEEFNKEHGITPKTIIKPVQDVISITKPSS 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +    ++   D     L+  + K  +K+L++QM  AA  L+FEEAA +RD I  L+ S
Sbjct: 609 GDKDKKSDSFADLNFDELTASQKKTMIKNLQEQMKEAAKKLDFEEAANLRDAIIDLQKS 667


>gi|157165003|ref|YP_001466603.1| excinuclease ABC subunit B [Campylobacter concisus 13826]
 gi|112800746|gb|EAT98090.1| excinuclease ABC, B subunit [Campylobacter concisus 13826]
          Length = 658

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/657 (51%), Positives = 457/657 (69%), Gaps = 7/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PS DQ  A+ +++K I S  K Q LLGVTGSGKTFTMA VI  +  P ++M 
Sbjct: 4   FEISSKFSPSSDQARAVKEIVKSIKSGNKYQTLLGVTGSGKTFTMANVIRELNMPTLIMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR+D YIEK+SS+N++++R+R 
Sbjct: 64  HNKSLAAQLYSEFKGFFPKNHVEYFISYYDYYQPEAYIPRSDLYIEKDSSVNDELERLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL  +D + V+SVS  YG+G+   Y  M+  L +GD + Q+ LL  LV   YKR 
Sbjct: 124 SATASLLSFDDVVCVASVSANYGLGNPSEYKGMVAYLNVGDKINQRTLLQKLVDMGYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD ++++P++  D A+R+  FG++IE +     L  +K  +++   +Y
Sbjct: 184 DVYFDRGDFRVNGDVVDVYPAYFNDEAFRIEFFGDEIETMYSLDVLENKKRHDLKKFILY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S ++     L  AMK I+EEL  RL E  ++G+L+EAQRL+QR+ +DLEM+ +TG C+
Sbjct: 244 PTSQFIVGADRLKIAMKEIEEELDARLKEFNEQGKLVEAQRLKQRVEFDLEMMASTGMCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENY+R+LTG+ PGE P ++F+Y     +D L+ VDESHV++PQ  GMY GD  RK  L
Sbjct: 304 GIENYARHLTGQKPGETPYSMFDYFEISGKDYLVIVDESHVSLPQFRGMYAGDRSRKEVL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL+F+E+   +   + VSATP  +EL   QG + EQI+RPTGL+DP
Sbjct: 364 VEYGFRLPSALDNRPLKFDEFISKKAKFLFVSATPNEYELGISQGHVYEQILRPTGLLDP 423

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EI+ +  QVE ++DE      +G R+L+TVLTK+MAE+L+ Y  E  I+V+YMHS++ 
Sbjct: 424 IIEIKDSDNQVEALFDEAKAVIARGERVLVTVLTKKMAEELSRYYIELGIKVKYMHSDID 483

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER EIIR LR G+FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GR
Sbjct: 484 AIERNEIIRGLRSGEFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGR 543

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN KV+++A  ITKS++ AID TT RR+ Q E+NK H I P S    I E +    
Sbjct: 544 AARNVNGKVLMFAKKITKSMKEAIDTTTARRKFQDEYNKAHGITPHSASRNIEESLH--- 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +ED  T  +   A    +   +  A +K LRKQM  AA  L FE+AA +RDEI +++
Sbjct: 601 VED-GTEILRKGANLEKMPASERAAIVKELRKQMLEAAAQLEFEKAAALRDEIAKMR 656


>gi|260434319|ref|ZP_05788289.1| excinuclease ABC, B subunit [Synechococcus sp. WH 8109]
 gi|260412193|gb|EEX05489.1| excinuclease ABC, B subunit [Synechococcus sp. WH 8109]
          Length = 679

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/671 (51%), Positives = 453/671 (67%), Gaps = 19/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           + +   Y P GDQP AI QL+ G++S E+ Q LLG TG+GKTFTMA VI    RPA+V+A
Sbjct: 4   YDLTAPYSPKGDQPTAIKQLVAGVNSGERYQTLLGATGTGKTFTMANVIAQTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPENAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G+++  +  L  LV  QY R 
Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGETLNIRSQLRELVNNQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I RG FR+ GD +EI P++ ED   RV +FG+++E I    P TG+ +++++ + IY
Sbjct: 184 DTEIARGRFRMKGDVLEIGPAY-EDRLVRVELFGDEVEAIRYVDPTTGEILQSMDAVNIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L++A+  I+ EL+ RL  L  EG+LLEAQRLEQR  YDLEML   G C 
Sbjct: 243 PAKHFVTPKDRLDSAISAIRSELRERLDVLNGEGKLLEAQRLEQRTKYDLEMLGQVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L E+
Sbjct: 303 GVENYARHLAGREEGTPPECLIDYFPDDWLLIVDESHVTCSQLQAMYNGDQARKKVLIEH 362

Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           GFRLPS  DNRPL+  E W+  R  T+ VSATPG+WE+E   G + EQ+IRPTG++DP V
Sbjct: 363 GFRLPSAADNRPLKGAEFWDKAR-QTVFVSATPGNWEMEVSGGEVAEQVIRPTGVLDPVV 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    QV+D+  EI   + +  R+L+T LTKRMAEDLT+YL E  +RVRY+HSE+ ++
Sbjct: 422 EVRPTTGQVDDLLGEIRNRSAKNQRVLVTTLTKRMAEDLTDYLAENEVRVRYLHSEIHSI 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAA
Sbjct: 482 ERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           R+V    +LYAD +T S+  AI ET RRR  Q  +N+K+ + P +  +K    I   L  
Sbjct: 542 RHVEGMALLYADNMTDSMAKAISETERRRAIQQAYNEKNGVVPTAAGKKASNSILSFLEL 601

Query: 740 DAATTNISIDAQQLSLSKKKGKA----------------HLKSLRKQMHLAADNLNFEEA 783
                    DA  + +  K  KA                 +  L  +M  AA  L+FEEA
Sbjct: 602 SRKLKQDGPDADLVEVVGKAAKALEDDPDAGLALEALPELIDQLEAKMKQAAKKLDFEEA 661

Query: 784 ARIRDEIKRLK 794
           A +RD +K+L+
Sbjct: 662 ANLRDRVKQLR 672


>gi|295134952|ref|YP_003585628.1| excinuclease ABC subunit B [Zunongwangia profunda SM-A87]
 gi|294982967|gb|ADF53432.1| excinuclease ABC subunit B [Zunongwangia profunda SM-A87]
          Length = 668

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/664 (51%), Positives = 465/664 (70%), Gaps = 15/664 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++DY P+GDQP AI QL+ GI   ++ Q LLGVTGSGKTFT+A VIE +Q+P +V+A
Sbjct: 3   FKIESDYKPTGDQPNAIKQLVGGIEKNDQFQTLLGVTGSGKTFTVANVIEEVQKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEA++P + TYIEK+ SIN++I+++R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPNNAVEYFVSYYDYYQPEAFIPSSGTYIEKDLSINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IVV+SVSC+YGIG+   + + +V ++    + + + L SLV+  Y R
Sbjct: 123 STTSSLLSGRRDVIVVASVSCLYGIGNPVEFRKNVVSIERDMEISRTKFLHSLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +   + G FR+ GD++++FPS+  D A+R+  FG++IE+I  F P T   I   E + I
Sbjct: 183 TEAEFVHGNFRIKGDTVDVFPSY-ADNAFRIHFFGDEIEDIEAFDPATNDVIEKYERLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A++ I+++L  ++      G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLQNAIRNIQDDLVKQVDYFRDIGKHLEAKRLDERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ VDESHVTIPQ+  MY GD  RK TL +
Sbjct: 302 SGIENYSRYLDGRQPGTRPFCLLDYFPDDFLMVVDESHVTIPQVHAMYGGDRSRKETLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL++ +G+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEILQNQVIYVSATPADYELQKSEGVYVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R ++ Q++D+ +EI +  ++  R L+T LTKRMAE+L +YL   +IR RY+HS+V TL
Sbjct: 422 EVRPSQNQIDDLIEEIQIRVEKDERTLVTTLTKRMAEELAKYLTRIDIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAI+DADKEGFLRS  SL QTIGRAA
Sbjct: 482 ERVEIMQDLRRGLFDVLIGVNLLREGLDLPEVSLVAIIDADKEGFLRSNRSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI---------M 730
           RNV  K ILYAD IT S+Q  +DET  RR KQ+ +NK HNI P+ + +K+         +
Sbjct: 542 RNVEGKAILYADKITDSMQKTMDETEYRRTKQMNYNKAHNITPKPLVKKLESSTLVKKKL 601

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           E+ +     D      + + +   L+K +    ++  RKQM  AA  L+F EAAR+RDEI
Sbjct: 602 EIFEG----DNKPPMQAAEEEGAYLTKPQIDKKIREKRKQMETAAKELDFMEAARLRDEI 657

Query: 791 KRLK 794
           K L+
Sbjct: 658 KILQ 661


>gi|169335817|ref|ZP_02863010.1| hypothetical protein ANASTE_02243 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258555|gb|EDS72521.1| hypothetical protein ANASTE_02243 [Anaerofustis stercorihominis DSM
           17244]
          Length = 663

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/658 (52%), Positives = 464/658 (70%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSG QP  I +L K I S  + Q LLGVTG GKT+ MAK+IE +QRPA++MA
Sbjct: 4   FKVHSPFEPSGGQPEVIDKLSKSILSGNRDQTLLGVTGCGKTYIMAKIIEKVQRPALIMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF++FFP NAVEYFVSYYDYYQPEAYVP  D YI K+SSIN+ ID++RH
Sbjct: 64  HNKTLAAQLANEFRSFFPDNAVEYFVSYYDYYQPEAYVPGRDLYIAKDSSINDDIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS   Y + ++ L+ G   E+ +++  L+  QY R 
Sbjct: 124 SATSALFERKDVIIIASVSCIYGLGSPFHYKEQVLSLRPGMIKERDDVIRKLIDIQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GDS+E+FP++  + A R+  F ++I+ I E   LTG+ IR+++   IY
Sbjct: 184 DIDFHRGTFRVRGDSVEVFPANSSEEAIRIEFFDDEIDRILEINSLTGEIIRSIKHPFIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT   ++N A+K I EELK+   E EK G+LLEAQR+ +R  YD+EML   GSC+
Sbjct: 244 PASHYVTDEVSINRALKSISEELKVTAEEFEKNGKLLEAQRIRERTNYDIEMLREIGSCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L    PG PP TL +Y P+D + F+DESHV++PQI GMY GD  RK  L +Y
Sbjct: 304 GIENYSRHLNDLPPGAPPYTLLDYFPKDFVTFIDESHVSVPQIRGMYAGDRARKMNLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATP  +E E+ +  I E I+RPTGL+DP + 
Sbjct: 364 GFRLPSALDNRPLNFEEFEERMNQLVYVSATPNDYEKERSKE-IAECIVRPTGLIDPKIT 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q+ED+   I     +  ++L+T LTKRMAEDLT YL E  IRV Y+HS+V T+E
Sbjct: 423 VKETKGQIEDLIGRIKEKTDKHEKVLVTTLTKRMAEDLTNYLSEVGIRVEYLHSDVDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+++I+DLR   FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RMKLIKDLRDDVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++  +V++YAD +T S++ AI ET RRR+ Q E+N+KH+I P+ + +     +  + +ED
Sbjct: 543 HLGGEVVMYADKMTPSMERAIGETDRRRKIQSEYNEKHHITPKGIVKSTENAMSALSIED 602

Query: 741 AATTNISIDAQQLSLSKKKGK----AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               ++    ++++ +K++ +      ++ L  QM L A NL FE AA++RDEI +LK
Sbjct: 603 VNAEDV---VKKITSNKEEFEHDVDKEIELLTTQMKLYAKNLEFELAAKLRDEIDKLK 657


>gi|257465864|ref|ZP_05630175.1| excinuclease ABC subunit B [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917021|ref|ZP_07913261.1| excinuclease ABC subunit B [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313690896|gb|EFS27731.1| excinuclease ABC subunit B [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 660

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/660 (51%), Positives = 473/660 (71%), Gaps = 11/660 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++   Y P+GDQP AI +L+K +  + + Q+LLGVTGSGKTFT+A VIE +QRP +++
Sbjct: 1   MFRLCAKYQPTGDQPIAIEKLVKSLERKNRDQVLLGVTGSGKTFTIANVIEKVQRPTLII 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E+K+FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+S++NE+ID++R
Sbjct: 61  APNKTLAAQLYQEYKSFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSAVNEEIDKLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           ++AT +L+ R D I+V+SVS IYG+GS E Y +M + + +   + + +L+  L+  +Y+R
Sbjct: 121 NAATAALIMRKDVIIVASVSAIYGLGSPEIYKKMTIPIDLKTGISRSKLIERLIALRYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIK 378
            D+  +RGTFRV GD ++I+PS+LE   +R+  +G+D+E ISE + LTG+KI+ N+E I 
Sbjct: 181 NDMNFVRGTFRVKGDVVDIYPSYLE-TGYRLEFWGDDLEAISEIHTLTGEKIKKNLERIV 239

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IYA + Y+T    L   +  I+E+    + + +  G+LLEAQRL+QR+ YD+EM++  G 
Sbjct: 240 IYAATQYITEEEDLERIITEIREDQVREVKQFQDSGKLLEAQRLQQRVDYDIEMIKEIGY 299

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENY+RYL G+ PGE P TL +Y PE+ LL +DESHV +PQI GMY GD  RK TL 
Sbjct: 300 CKGIENYARYLAGKLPGETPNTLLDYFPENFLLVLDESHVGVPQIRGMYNGDISRKTTLV 359

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E GFRL + +DNRPL+F+E+      TI VSATPG +E++Q    +VEQ+IRPTG++DP 
Sbjct: 360 ENGFRLKAALDNRPLQFDEFRARTGQTIYVSATPGDYEIQQSGSSVVEQLIRPTGILDPF 419

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R  + QV+D+ +EI+    +  R+L+T LTK+MAE+LTEY  +  I+VRYMHS+V T
Sbjct: 420 IEVRPTKGQVDDLLEEIHKRVVKKQRVLVTTLTKKMAEELTEYYSDLGIKVRYMHSDVDT 479

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L+RIEII+ LR G+ DVLVGINLLREGLDIPE  LVAIL+ADKEGFLRS+ SLIQTIGRA
Sbjct: 480 LDRIEIIKLLRKGEIDVLVGINLLREGLDIPEVSLVAILEADKEGFLRSRRSLIQTIGRA 539

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME---VIDP 735
           ARNV  +VILY D +T S+ LA++ET RRR  Q  +N  H + P+++ ++I E    +D 
Sbjct: 540 ARNVEGRVILYGDVMTDSMALAMEETKRRRAIQENYNLLHGVEPEAIVKEIAEEMIQLDY 599

Query: 736 ILLEDAATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            + E+A +            + K+  K H K ++      +  L+FE+A  +RDE+K L+
Sbjct: 600 GISEEAFSKKSKKKFHSKEEIEKEIAKCHKKIVK-----LSKELDFEQAILVRDEMKLLQ 654


>gi|293380197|ref|ZP_06626279.1| excinuclease ABC subunit B [Lactobacillus crispatus 214-1]
 gi|290923241|gb|EFE00162.1| excinuclease ABC subunit B [Lactobacillus crispatus 214-1]
          Length = 681

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/659 (50%), Positives = 467/659 (70%), Gaps = 5/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + +P +V+ 
Sbjct: 10  FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIAKLNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L+ERND +VV+SVSCIYG+G  + Y++ ++ +  G+  ++  LL  LV  QY R 
Sbjct: 130 ATTSALMERNDVVVVASVSCIYGLGDPKEYARSVLMIHEGEEYDRNTLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+   + A+ +  FG++I+ I E   LTG+ I   E+I ++
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPAGNSNHAYPIEFFGDEIDRIVEVDSLTGEVIGERESISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L  A+  I +E+K+++ + E EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNDEQLRRALGAISKEMKLQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERTDH-KVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVGEINKRIDRHERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+QT+GRAAR
Sbjct: 489 RMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N N +VI+YADTIT S++ AI  T RRR+ Q+E NK+H I P+++ + I +VI    P  
Sbjct: 549 NANGEVIMYADTITDSMRAAIKATKRRRKIQMEFNKEHGITPKTIIKPIQDVISITKPSS 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            ++  + + + D     L+ K+ K  + +L++QM  AA  L+FEEAA +RD I  L+ S
Sbjct: 609 EKEEKSDSFA-DLNFDELTAKQKKTMISNLQEQMQEAAKKLDFEEAANLRDAIMELQKS 666


>gi|332292837|ref|YP_004431446.1| excinuclease ABC, B subunit [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170923|gb|AEE20178.1| excinuclease ABC, B subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 666

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/655 (50%), Positives = 462/655 (70%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ + P+GDQP AI  L+ G+++ E  Q LLGVTGSGKTFT+A VI+  Q+P +V+A
Sbjct: 3   FKLESPFKPTGDQPTAIKSLVDGVNANEAYQTLLGVTGSGKTFTVANVIQETQKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEA++P +  YIEK+ SINE+I++MR 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAFIPSSGVYIEKDLSINEEIEKMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IV++SVSC+YGIG+   + + I+++K    + +  LL  LV+  Y R
Sbjct: 123 STTTSLLSGRRDVIVIASVSCLYGIGNPAEFQKNIIEIKQDQVIARTMLLKKLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +     G FR+ GD++E+FP +  D+A+R+  FG++IEEI  F P + + I     ++I
Sbjct: 183 TESEFNHGNFRIKGDTVEVFPGY-ADMAFRIHFFGDEIEEIEAFDPTSAEVIEKYSQLRI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +  L  A+  I E+L  ++   E  G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSQDVLQGAINQIGEDLTKQVGFFEGVGKHLEAKRLDERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L ++ P+D L+ VDESHVT+ Q+S MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDFFPDDYLMVVDESHVTVSQVSAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEEW  ++   I VSATP  +EL++ +G  VEQIIRPTGL+DP V
Sbjct: 362 YGFRLPAAMDNRPLKFEEWEAMQNQVIYVSATPADYELQKTEGAYVEQIIRPTGLLDPIV 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI     +  RIL+T LTKRMAE+LT+YL   +IR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLIEEITKVTARNERILVTTLTKRMAEELTKYLTRIDIRTRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QTIGRAA
Sbjct: 482 ERVEIMQDLRKGLYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI---MEVIDPI 736
           RN+N K I+YAD IT+S+Q  ID++  RR+KQ+++N KH ++P ++K+ +   M   +  
Sbjct: 542 RNINGKAIMYADKITRSMQETIDDSNYRRQKQIDYNTKHGLSPMAIKKSLDNAMTQKEAY 601

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            +E     N++ +  Q   ++ + +  ++S RK M  AA  L+F +AA++RD+IK
Sbjct: 602 KIEAEELVNLAAEDAQEYQTRPQIEKKIRSTRKAMEAAAKELDFMQAAKLRDQIK 656


>gi|84489383|ref|YP_447615.1| excinuclease ABC subunit B [Methanosphaera stadtmanae DSM 3091]
 gi|121717291|sp|Q2NGT1|UVRB_METST RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|84372702|gb|ABC56972.1| UvrB [Methanosphaera stadtmanae DSM 3091]
          Length = 649

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/659 (53%), Positives = 455/659 (69%), Gaps = 20/659 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +DY P GDQP AI  L++      K Q L GVTGSGKTFTMA VIE + +P +VM+
Sbjct: 4   FNLYSDYKPLGDQPKAIKSLVEHYKDGIKEQTLEGVTGSGKTFTMANVIEQLDKPTLVMS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV +TDT+I+KES+INE+IDR+RH
Sbjct: 64  HNKTLAAQLYEEFKEFFPDNAVEYFVSYYDYYQPEAYVAQTDTFIDKESAINEEIDRLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLL R+D IVVSSVSCIYGIGS E Y+Q  + L+    + ++++L  LVK QY R 
Sbjct: 124 SATQSLLTRDDVIVVSSVSCIYGIGSPEDYAQFTLTLQTQQEISREDILKELVKMQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  IRG FRV GD IEIFP +  + A R+ ++G++I+ I +   L G  I  ++ + I+
Sbjct: 184 DIEFIRGQFRVRGDVIEIFPIN-ANYALRIELWGDEIDVIYKIDALKGDIIEELQKVIIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V  +    TA+  IK+ELK R+   +  G+ +EAQR+EQR  +D+EML+  G C 
Sbjct: 243 PAKHFVIAKEKQETAIANIKKELKERVDTFKATGKYVEAQRIEQRTNFDMEMLQEIGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR  GE P +L  Y P+D L  +DESHVT+PQI GMY GD  RK  L +Y
Sbjct: 303 GIENYSMHMNGRKWGETPYSLLRYFPDDYLTIIDESHVTVPQIRGMYEGDRARKENLIQY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPLRF+E+   +   + VSATP ++EL + +   VEQIIRPTGLVDP   
Sbjct: 363 GFRLPSAKENRPLRFDEFMRAQNQVLYVSATPAAFELGRSKN-KVEQIIRPTGLVDPEPI 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + QV+D+  EI        R+L+T LTK+MAEDLT+Y  + N++ RY+HSE+ TLE
Sbjct: 422 VRPIKNQVDDLLGEIRKCVDNNQRVLVTSLTKKMAEDLTDYYIKMNVKARYLHSEISTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EII +LR G FD LVG+NLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RTEIIDELRRGDFDCLVGVNLLREGLDLPEVALVAILDADKEGFLRSQTSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV-----KEKIMEVIDP 735
           NVN +VILYAD IT S++ A++ T  RR+ Q+ +N  HNI P+SV      +KI E +D 
Sbjct: 542 NVNGRVILYADNITDSVRNAVNITKHRRKIQIAYNNDHNITPRSVVRKLKDKKIEEKVDD 601

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           I   D  TT+  ID              +K L K+M  AA +LNFE+AA++RD I  LK
Sbjct: 602 IQEIDNITTD-EID------------EIIKELEKEMKQAAKDLNFEKAAKLRDRIMELK 647


>gi|304437272|ref|ZP_07397232.1| excision endonuclease subunit UvrB [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369764|gb|EFM23429.1| excision endonuclease subunit UvrB [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 691

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/657 (54%), Positives = 462/657 (70%), Gaps = 3/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P GDQP AIA L  GI +    Q+LLG TG+GKT+TMAKVIE++QRP +V+A
Sbjct: 29  FKVVAPFEPMGDQPQAIADLAGGIENGMTAQVLLGATGTGKTYTMAKVIESVQRPTLVIA 88

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK+FFP N V YFVSYYD+YQPEAY+ +TDTYIEK++SIN++ID +RH
Sbjct: 89  HNKTLAAQLASEFKSFFPDNYVGYFVSYYDFYQPEAYIAQTDTYIEKDASINDEIDELRH 148

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+GS ESY +M++ +  G ++ ++E+L  L+  +Y+R 
Sbjct: 149 SATCSLFERRDVIIVASVSCIYGLGSPESYHEMVLSVHKGQTITREEILQKLISIRYERN 208

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD IEIFP+   +   R+ MFG+++E I EF   TG+         ++
Sbjct: 209 DIAFERGRFRVRGDVIEIFPAGYNNRGVRIEMFGDEVERIIEFDVTTGEVYGERLHSMVF 268

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    +  AM  I+ EL+ RL  L+ EG+LLEAQRLEQR  YDLEM++  G C 
Sbjct: 269 PASHYVTDDEDMKIAMADIRTELEERLAVLKGEGKLLEAQRLEQRTNYDLEMMQEMGYCS 328

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PG  P TL +Y PED L+ +DESHVT+PQI  MY GD  RK +L + 
Sbjct: 329 GIENYSRHLTHRAPGATPYTLLDYFPEDFLIMIDESHVTLPQIHAMYGGDRSRKVSLVDN 388

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       + VSATPG +E++Q Q  + +QIIRPTGL+DP VE
Sbjct: 389 GFRLPSAFDNRPLTFEEFAARINQIVYVSATPGKYEMQQAQ-QVAQQIIRPTGLLDPEVE 447

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI L   +  R+L+T LTKRMAE+LTEYL E  ++VRY+HS++ T+E
Sbjct: 448 VRPLAGQIDDLMGEIRLRIGRNERVLVTTLTKRMAENLTEYLREAGVKVRYLHSDIATIE 507

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EII DLR G+FDVLVGINLLREGLD+PE  L+AILDADKEGFLRS T+LIQTIGRAAR
Sbjct: 508 RAEIIHDLRAGEFDVLVGINLLREGLDMPEVSLIAILDADKEGFLRSDTALIQTIGRAAR 567

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           N    VI+Y D IT S+Q AIDET RRR  Q E+N++H I P+++ + I+ +I+  L+  
Sbjct: 568 NAGGHVIMYGDVITGSMQRAIDETERRRTIQQEYNEEHGIVPKTIVKPIVPLIEMTLVAA 627

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           ED +         +  L KK+ +  +KSL ++M  A+  L FE AA +RD I  L+ 
Sbjct: 628 EDKSPYGKKDGKAKKKLGKKERENLVKSLLREMQQASRALEFERAAELRDMIVELEG 684


>gi|296272434|ref|YP_003655065.1| excinuclease ABC subunit B [Arcobacter nitrofigilis DSM 7299]
 gi|296096608|gb|ADG92558.1| excinuclease ABC, B subunit [Arcobacter nitrofigilis DSM 7299]
          Length = 657

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/663 (53%), Positives = 461/663 (69%), Gaps = 20/663 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y P+GDQP AI +L + I +  +   LLGVTGSGKT+TMAKVIE  Q+P ++M 
Sbjct: 4   FKVESKYSPAGDQPQAIEKLSESILAGNQYNTLLGVTGSGKTYTMAKVIEKTQKPTLIMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK+FFP+N VEYF+SYYDYYQPEAY+PR+D +IEK+SSIN +++RMR 
Sbjct: 64  HNKTLAAQLYSEFKSFFPNNHVEYFISYYDYYQPEAYIPRSDLFIEKDSSINSELERMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL  +D IVV+SVS  YG+G+   Y  M+ +L +G    Q+ LL  LV   YKR 
Sbjct: 124 SATASLLSFDDVIVVASVSANYGLGNPAEYKSMVQKLSVGFEYSQRTLLMKLVDMGYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD I++FP++ +D   R+  F +++E IS    +T  K ++V+ + IY
Sbjct: 184 DKFFDRADFRVNGDVIDVFPAYWQDEFIRIEFFADEVESISIHEYMTNVKQKDVQDVTIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           + + +V     L TA+K I+EEL+ RL  L+ E RL+E QRL+QR+ +DLEM+E TG C+
Sbjct: 244 SVNPFVVNSENLATAVKKIEEELEDRLAFLKAEDRLVEYQRLKQRVEFDLEMIEGTGMCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTL---FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENY+R+LTG  PGE P ++   FE I +D LL VDESHV++PQ  GM+  D  RK  L
Sbjct: 304 GIENYARHLTGLEPGETPYSMMDYFEQIGKDFLLIVDESHVSLPQFRGMHAADKSRKEVL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL F+E+    P  + VSATP   E      ++ EQIIRPTGL+DP
Sbjct: 364 VEYGFRLPSALDNRPLMFDEFINKAPHYLFVSATPNELE-TSMSSVVAEQIIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EI  +  QVE ++DEI   A +  R+L+TVLTK+MAE+LT Y  +  IRV+YMHSE+ 
Sbjct: 423 TIEIMDSEFQVEKLHDEIKKVAAKNERVLVTVLTKKMAEELTAYYLDLGIRVKYMHSEID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+EIIR LRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRSKTSLIQT+GR
Sbjct: 483 TLERVEIIRQLRLGEFDVLVGINLLREGLDIPETSLVAILDADKEGFLRSKTSLIQTMGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
            ARN N +VIL+A  +T S+Q AID T +RRE Q  HNKKH I P S   +++E  D + 
Sbjct: 543 GARNQNGRVILFAKRVTDSMQFAIDVTNKRREVQEAHNKKHGITPTSTT-RVLE--DNLK 599

Query: 738 LEDAATTNISIDAQQLSLSK------KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           LE+        DA  L L K       + K  L  L K M  A+ +LNFEEA R+RDEI+
Sbjct: 600 LEE-------YDAVALKLEKLDKMPAAERKKMLIELNKAMTKASKDLNFEEAIRLRDEIE 652

Query: 792 RLK 794
           ++K
Sbjct: 653 KIK 655


>gi|323466934|gb|ADX70621.1| Excision endonuclease subunit UvrB [Lactobacillus helveticus H10]
          Length = 682

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/659 (50%), Positives = 463/659 (70%), Gaps = 4/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + +P +V+ 
Sbjct: 10  FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIANLNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L+ERND IVV+SVS IYG+G  + Y++ ++ +  G   ++  LL  LV  QY R 
Sbjct: 130 ATTSALMERNDVIVVASVSSIYGLGDPKEYARSVLMIHEGQEYDRNVLLRDLVNLQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   + A+R+  FG++I+ I E   LTG+ I   E+I ++
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGNSNHAYRIEFFGDEIDRIVEIDSLTGEVIGERESISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L  A+K I +E+K ++ + E EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNDDQLRRALKAISKEMKDQVKKFEGEGKLLEAERIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L  +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLTLIDESHATMPEIRAMYNGDRNRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVHQILYVSATPGDYELERTNH-KVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+V+Y+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVQYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+QT+GRAAR
Sbjct: 489 RMKILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N N +VI+YADTIT S++ AI+ T RRR+ Q E NK+H I P+++ + + +VI    P  
Sbjct: 549 NANGEVIMYADTITDSMRAAINATKRRRKIQEEFNKEHGITPKTIIKPVQDVISITKPSS 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +    ++   D     L+  + K  +K+L++QM  AA  L+FEEAA +RD I  L+ S
Sbjct: 609 GDKDKKSDSFADLNFDELTASQKKTMIKNLQEQMKEAAKKLDFEEAANLRDAIIDLQKS 667


>gi|300088152|ref|YP_003758674.1| excinuclease ABC subunit B [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527885|gb|ADJ26353.1| excinuclease ABC, B subunit [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 674

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/660 (51%), Positives = 466/660 (70%), Gaps = 6/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T FQ+ +D+   GDQP A+  L +G+    + Q LLGVTGSGKTFTMA +I    RPA+
Sbjct: 1   MTDFQLVSDFGLMGDQPQAVDALTRGLDEGLRDQTLLGVTGSGKTFTMANIIARTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY+EF+ FFPHN+VEYFVSYYDYYQPEAYVP  D YIEKES IN++ID+
Sbjct: 61  VISHNKTLAAQLYAEFREFFPHNSVEYFVSYYDYYQPEAYVPSRDMYIEKESDINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+ATR+LL R D I+V+SVSCIYG+G  E Y + I+ L+ G S  + E++  LV  QY
Sbjct: 121 LRHAATRALLSRRDVIIVASVSCIYGLGEPEEYMRFILNLEKGVSYRRDEIVRKLVDMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RG FR+ GD++E+ P++ E+ A RV  FG++IE I    PLTG+ + ++  I
Sbjct: 181 ERNDMDFTRGKFRLRGDTLELRPAY-EETAIRVEFFGDEIERILRIDPLTGEFLEDIRII 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VT    L  A++ I++EL      L+++G+LLEA RLEQR  YDLEMLE  G
Sbjct: 240 DIYPAKHFVTSPEKLAKALQGIRDELAQHTAMLKEQGKLLEAARLEQRTNYDLEMLENAG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L  R  G  P TL +Y PED +LFVDESH+++PQI GMY GD  RK TL
Sbjct: 300 YCSGVENYSRHLALRPAGSTPWTLLDYFPEDFILFVDESHMSLPQIRGMYNGDRARKETL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL F E+       + VSATPG +E E      VEQ++RPTGL++P
Sbjct: 360 VDYGFRLPSALDNRPLNFSEFRQRVGQAVYVSATPGPYEREHS-AQTVEQVVRPTGLLEP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E++    Q++D+ ++I L   +G R L+T LTK++AE L EY+ E  ++ +Y+HSEV+
Sbjct: 419 IIEVKPTTGQIDDLLEQIKLRVARGERCLVTTLTKKLAEKLAEYITEAGVKTQYLHSEVE 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T ER+EI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEGFLRS+ +LIQT+GR
Sbjct: 479 TFERVEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSEWALIQTMGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V+ +VI+YADTIT S++ AI E  RRRE Q  +N++H I PQ +++ I ++ + + 
Sbjct: 539 AARHVDGRVIMYADTITGSMERAIAEVKRRREIQEAYNQEHGITPQGIRKAIKDITERVR 598

Query: 738 LEDAATTNISIDA---QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             ++A    S DA   + ++LSK++    ++ L  QM  +A  ++FE AA +RD I  LK
Sbjct: 599 TAESAVVAES-DADSYKSMALSKEELARLIRELETQMKKSAKLMDFERAALLRDRIIELK 657


>gi|289432332|ref|YP_003462205.1| excinuclease ABC subunit B [Dehalococcoides sp. GT]
 gi|288946052|gb|ADC73749.1| excinuclease ABC, B subunit [Dehalococcoides sp. GT]
          Length = 664

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/657 (51%), Positives = 463/657 (70%), Gaps = 6/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+  +GDQP A+ +L +G+ S    Q LLGVTGSGKTFTMA VI  + RP ++++
Sbjct: 4   FKIVSDFALTGDQPQAVEKLAEGLVSGLTDQTLLGVTGSGKTFTMANVIARVNRPTLIIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K F P N+VEYFVSYYDYYQPEAYVP+ D YIEK+S INE+ID++RH
Sbjct: 64  HNKTLAAQLYSEMKEFLPENSVEYFVSYYDYYQPEAYVPQKDMYIEKDSDINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + TR+L ER D ++V+SVSCIYG+G  E Y   ++ LK G S  +  +L  LV  QY+R 
Sbjct: 124 ATTRALFERRDVVIVASVSCIYGLGEPEEYHSFVLPLKKGQSFRRDLILRRLVDMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FR+ GD++EI P++ E++A RV  FG++IE I    P++G+ + ++E I IY
Sbjct: 184 DLDFSRGKFRLRGDTLEIQPAY-EELALRVEFFGDEIERIVSLDPVSGELLADIEEINIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT    +  A+K I+ EL+ RL ELE EG++LEA RL+QR  YDLEM+E  G C 
Sbjct: 243 PAKHFVTSAEKMAEAIKSIQAELEDRLKELEAEGKMLEAARLKQRTNYDLEMMEQAGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L GR  G  P TL +Y PED LL VDESH+++PQI GMY GD  RK TL +Y
Sbjct: 303 GVENYSRHLAGRKAGSAPWTLLDYFPEDFLLIVDESHMSLPQIRGMYAGDSARKKTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL F+E+       I VSATPG +E E     +VEQ++RPTGL++P + 
Sbjct: 363 GFRLPSAMDNRPLSFDEFKARVKQAIYVSATPGPYEKEHSLQ-VVEQLVRPTGLLEPVMT 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ +E+     +  R+L+T LTK+M+E L +YL E  ++  Y+HSEV TLE
Sbjct: 422 VKPTVGQIDDLLEEVKKRVAKNERVLITTLTKKMSEKLADYLVEMGVKTHYLHSEVDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS+ +LIQT+GRAAR
Sbjct: 482 RIEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V+ +VI+YAD IT S+Q A+DE  RRR+ Q ++N+ HNI PQ +++ I ++ + I    
Sbjct: 542 HVDGQVIMYADKITGSMQRAMDEIIRRRKIQEDYNRLHNITPQGIRKAIKDINERI---R 598

Query: 741 AATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + T  +S    + + + ++  A L K L  QM  AA NL FE AA IRD +  L+++
Sbjct: 599 SVTAEVSGPEFRPTPTLREDIARLIKELESQMKKAAKNLEFERAALIRDRVVELRAA 655


>gi|147669063|ref|YP_001213881.1| excinuclease ABC subunit B [Dehalococcoides sp. BAV1]
 gi|146270011|gb|ABQ17003.1| excinuclease ABC, B subunit [Dehalococcoides sp. BAV1]
          Length = 664

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/657 (51%), Positives = 463/657 (70%), Gaps = 6/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+  +GDQP A+ +L +G+      Q LLGVTGSGKTFTMA VI  + RP ++++
Sbjct: 4   FKIVSDFALTGDQPQAVEKLAEGLVRGLTDQTLLGVTGSGKTFTMANVIARVNRPTLIIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K F P N+VEYFVSYYDYYQPEAYVP+ D YIEK+S INE+ID++RH
Sbjct: 64  HNKTLAAQLYSEMKEFLPENSVEYFVSYYDYYQPEAYVPQKDMYIEKDSDINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATR+L ER D ++V+SVSCIYG+G  E Y   ++ LK G S  +  +L  LV  QY+R 
Sbjct: 124 AATRALFERRDVVIVASVSCIYGLGEPEEYRSFVLPLKKGQSFRRDLILRRLVDMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FR+ GD++EI P++ E++A RV  FG++IE I    P++G+ + ++E I IY
Sbjct: 184 DLDFSRGKFRLRGDTLEIQPAY-EELALRVEFFGDEIERIVSLDPVSGELLADIEEINIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT    +  A+K I+ EL+ RL ELE EG++LEA RL+QR  YDLEM+E  G C 
Sbjct: 243 PAKHFVTSAEKMAEAIKSIQAELEDRLKELEAEGKMLEAARLKQRTNYDLEMMEQAGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L GR  G  P TL +Y PED LL VDESH+++PQI GMY GD  RK TL +Y
Sbjct: 303 GVENYSRHLAGRKAGSAPWTLLDYFPEDFLLIVDESHMSLPQIRGMYAGDSARKKTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL F+E+       I VSATPG +E E     +VEQ++RPTGL++P + 
Sbjct: 363 GFRLPSAMDNRPLSFDEFKARVKQAIYVSATPGPYEKEHSLQ-VVEQLVRPTGLLEPVMT 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ +E+     +  R+L+T LTK+M+E L +YL E  ++  Y+HSEV TLE
Sbjct: 422 VKPTVGQIDDLLEEVKKRVAKNERVLITTLTKKMSEKLADYLVEMGVKTHYLHSEVDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS+ +LIQT+GRAAR
Sbjct: 482 RIEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V+ +VI+YAD IT S+Q A+DE  RRR+ Q ++N+ HNI PQ +++ I ++ + I    
Sbjct: 542 HVDGQVIMYADKITGSMQRAMDEIIRRRKIQEDYNRLHNITPQGIRKAIKDINERI---R 598

Query: 741 AATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + T  +S    + + + ++  A L K L  QM  AA NL FE AA IRD +  L+++
Sbjct: 599 SVTAEVSGPEFRPTPTLREDIARLIKELESQMKKAAKNLEFERAALIRDRVVELRAA 655


>gi|224475900|ref|YP_002633506.1| excinuclease ABC subunit B [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420507|emb|CAL27321.1| excinuclease ABC subunit B [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 660

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/655 (53%), Positives = 465/655 (70%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQPAAI +L +GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +V+A
Sbjct: 6   FKIVSDYEPQGDQPAAIKELTEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLVIA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY+EFK  FP N VEYFVS+YDYYQPEAYVP TDT+IEK+++IN++ID++RH
Sbjct: 66  HNKTLAGQLYNEFKELFPENRVEYFVSFYDYYQPEAYVPSTDTFIEKDATINDEIDQLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER+D I+V+SVS I+G+G+ E YS ++V ++ G  +++ + L  LV  QY R 
Sbjct: 126 SATSSLFERDDVIIVASVSSIFGLGNPEEYSDLVVNIREGMEMDRSQFLRDLVDIQYTRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +E+FP+  E++  RV  FG++I+ ISE   LTG+ +R  E   I+
Sbjct: 186 DIDFKRGTFRVRGDVVEVFPASREEICIRVEFFGDEIDRISEVNYLTGEVLRQREHFSIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 246 PASHYVTRDEKLKLAIERIEKELEERLKELRSENKLLEAQRLEQRTNYDLEMMREMGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ VDESHVT+PQI GMY GD  RK  L ++
Sbjct: 306 GIENYSVHLTLRPIGSTPYTLLDYFGDDWLVMVDESHVTLPQIRGMYNGDRARKQVLIDH 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATPG +ELE     + EQIIRPTGL+DP ++
Sbjct: 366 GFRLPSAIDNRPLTFEEFEEKAKQLVYVSATPGPYELEHTDE-MTEQIIRPTGLLDPKID 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI     +  R+L+T LTK+M+EDLT YL E  I+V Y+HSE+KTLE
Sbjct: 425 VRPTKNQIDDLLSEIQDRVDKNERVLITTLTKKMSEDLTTYLKEAGIKVNYLHSEIKTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +D +VGINLLREG+DIPE  LV ILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 485 RIEIIRDLRMGTYDAVVGINLLREGIDIPEVSLVVILDADKEGFLRSERSLVQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S++ AIDET RRR+ Q E+N++H I PQ++ +KI +VI    +E 
Sbjct: 545 NEHGEVIMYADKITDSMKFAIDETERRRKIQNEYNEEHGITPQTIHKKIHDVISAT-VET 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                         L+KK+ +  + ++ K+M  AA +L+FE A  +RD +  LK+
Sbjct: 604 KEENEKDQKVVPKKLTKKEREKTIANIEKEMKKAAKDLDFERATELRDMLFELKA 658


>gi|126663561|ref|ZP_01734558.1| excinuclease ABC subunit B [Flavobacteria bacterium BAL38]
 gi|126624509|gb|EAZ95200.1| excinuclease ABC subunit B [Flavobacteria bacterium BAL38]
          Length = 662

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/658 (51%), Positives = 464/658 (70%), Gaps = 5/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y P+GDQP AI +L KGI + EK Q LLGVTGSGKTFT+A V++ +Q+P +V+A
Sbjct: 3   FQVVSEYKPTGDQPQAIEKLSKGIVNGEKYQTLLGVTGSGKTFTVANVVQEVQKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+N+V+YFVSYYDYYQPEA++P T TYIEK+ SINE+++++R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPNNSVQYFVSYYDYYQPEAFIPVTGTYIEKDLSINEELEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T +LL  R D IV+SSVSC+YGIG+   + + +V L+ G  + + +LL  LV+  Y R
Sbjct: 123 STTSALLSGRRDIIVISSVSCLYGIGNPVEFQKNVVNLETGQQISRTKLLHQLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +     G FR+ GD +EIFPS+  D  +R+  FG++IEEI  F   T Q +   E + I
Sbjct: 183 TEADFNPGNFRIKGDIVEIFPSY-GDEPFRIHFFGDEIEEIEAFDARTAQVLERYEKLSI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+++L  ++   ++ G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLQNAIWAIQQDLVKQVDYFKEIGKHLEAKRLEERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ VDESHVTI Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDFLMVVDESHVTISQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +ELE+ +G+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELEKTEGVYVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR +  Q++D+ +EI L  +   R+L+T LTKRMAE+L +YL +  IR RY+HS+V TL
Sbjct: 422 EIRPSANQIDDLIEEIQLRCEADERVLVTTLTKRMAEELAKYLTKVAIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K I+YAD ITKS+Q  IDETT RREKQ ++N KH + P+++ + +   +    + 
Sbjct: 542 RNVNGKAIMYADKITKSMQKTIDETTYRREKQTKYNTKHGLEPKALNKSLGSALSGNSVS 601

Query: 740 DAATTNISIDA---QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  ++ A   + L LSK + +  ++ +RK M  AA  L+F +AA++RD+IK L+
Sbjct: 602 TGYFEKEALKAAEPESLYLSKPEIEKKIRDMRKLMEKAAKELDFMQAAKLRDDIKALQ 659


>gi|300775460|ref|ZP_07085322.1| excision endonuclease subunit UvrB [Chryseobacterium gleum ATCC
           35910]
 gi|300506200|gb|EFK37336.1| excision endonuclease subunit UvrB [Chryseobacterium gleum ATCC
           35910]
          Length = 663

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/669 (51%), Positives = 468/669 (69%), Gaps = 22/669 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q++Y P+GDQP AI +L +GI   EK Q LLGVTGSGKTFT+A VI+ +QRP +V+A
Sbjct: 3   FKLQSEYKPTGDQPQAIEKLTEGIEIGEKYQTLLGVTGSGKTFTVANVIQNVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEAY+  T TYIEK+ SINE+++++R 
Sbjct: 63  HNKTLAAQLFMEFKEFFPENAVEYFVSYYDYYQPEAYIATTGTYIEKDLSINEEVEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT SLL  R D ++V+SVSCIYGIG+   + + ++ + IG+ V +  LL SLV   Y R
Sbjct: 123 SATASLLSGRRDVLIVASVSCIYGIGNPTEFHKSLISIAIGEKVTRTALLHSLVNALYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD I++FP++  D A R+  FG++IE+I  F PLTG    N + I+I
Sbjct: 183 TLNEFQRGTFRVKGDVIDVFPAY-ADNAIRIQFFGDEIEKIQSFDPLTGNVESNFDQIQI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT + TLN A++ I++++  ++       + LEA+RL++R   DLEM++  G C
Sbjct: 242 YPANLFVTSKETLNGAIREIQDDMVKQVDFFNSIEKPLEAKRLQERTELDLEMIKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ +DESHVT+PQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGRLPGSRPFCLIDYFPKDFLMVIDESHVTVPQVHAMYGGDRSRKEALVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  ++   I VSATP  +ELE+  G  +EQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEAMQNQVIYVSATPADYELEKTGGAYIEQIIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+ +EI   A    R+L+T LTK+MAE+LT+Y  +  IR RY+HS+V+TL
Sbjct: 422 EVRPTLNQIDDLMEEIQKRADADERVLVTTLTKKMAEELTKYFTKFGIRTRYIHSDVETL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERI+I++DLRLG FDVL+G+NLLREGLD+PE  LVAILDADKEG LRS+ S+IQT+GRAA
Sbjct: 482 ERIQIMQDLRLGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGMLRSRRSMIQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RNVN K I+YAD ITKS+Q  +DET  RR KQ+++N++H + P+++ +KI E +      
Sbjct: 542 RNVNGKAIMYADKITKSMQATLDETEYRRAKQMKYNEEHGLQPKALNKKISENLVGRSKD 601

Query: 734 -------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
                     +L+  A T  S  ++ +          +   +K+M  AA NL+F +AA++
Sbjct: 602 FPDEKYTQKEILQKVAETKASYASEDID-------KMIAQKQKEMEAAAKNLDFIKAAKL 654

Query: 787 RDEIKRLKS 795
           RDEI+ LK+
Sbjct: 655 RDEIEALKA 663


>gi|315023810|gb|EFT36812.1| excinuclease ABC subunit B [Riemerella anatipestifer RA-YM]
          Length = 666

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/672 (50%), Positives = 472/672 (70%), Gaps = 23/672 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L+ GI   +  Q LLGVTGSGKTFT+A V+  +QRP IV+A
Sbjct: 3   FKLHSEFKPTGDQPQAIDKLVSGIEQGQPYQTLLGVTGSGKTFTIANVVNTVQRPTIVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEAY+  T TYIEK+ SINE+++++R 
Sbjct: 63  HNKTLAAQLFMEFKEFFPENAVEYFVSYYDYYQPEAYIASTGTYIEKDLSINEEVEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT SLL  R D ++V+SVSCIYGIG+   +++ +++L++   + + +LL  LV   Y R
Sbjct: 123 SATTSLLSGRRDVLIVASVSCIYGIGNPTEFNKSLIELELQSKISRTDLLHKLVNALYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                +RG+FRV GD I+IFP++  D A R+  FGN+I++I  F P++G  + + + I I
Sbjct: 183 AVNEFVRGSFRVKGDVIDIFPAY-ADNAIRIRFFGNEIDKIQSFDPISGSIMGDFDKINI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT + T+N+A++ I+++L  ++    + G+ LEA+RL++R   DLEM++  G C
Sbjct: 242 YPANLFVTSKETMNSAIREIQDDLVKQVDFFNEIGKNLEAKRLKERTELDLEMIKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY+ GRNPG  P  L +Y P D L+ +DESHVTIPQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYMDGRNPGSRPFCLLDYFPNDYLMVIDESHVTIPQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  ++   I VSATP  +ELE+ QG  VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFESMQNQVIYVSATPADYELEKTQGEYVEQIIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+ +EI   A++  R+L+T LTK+MAE+LT+Y  +  IR RY+HS+V TL
Sbjct: 422 EVRPTLNQIDDLMEEIQKRAEEDERVLVTTLTKKMAEELTKYFTKFGIRTRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERI+I++DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEG LRS+ S+IQT+GRAA
Sbjct: 482 ERIQIMQDLRAGLFDVLVGVNLLREGLDLPEVSLVAILDADKEGMLRSRRSMIQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV------- 732
           RN+N K I+YAD +TKS+Q  IDET  RREKQ+ +N+ + + PQ + +KI +V       
Sbjct: 542 RNINGKAIMYADKMTKSMQATIDETNYRREKQMSYNEANGLIPQPLNKKISDVLVGHTPD 601

Query: 733 ------IDPILLEDAATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
                 I   +++  A T +S  +A+ L       +  +   +KQM  AA  L+F  AA+
Sbjct: 602 FPKQEYIQKEIVKQVAETKVSYGNAEDL-------EKIIAEKQKQMEAAAKQLDFILAAK 654

Query: 786 IRDEIKRLKSSP 797
           +RDEIK LK +P
Sbjct: 655 LRDEIKALKGTP 666


>gi|163782904|ref|ZP_02177900.1| excinuclease ABC subunit B [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882025|gb|EDP75533.1| excinuclease ABC subunit B [Hydrogenivirga sp. 128-5-R1-1]
          Length = 664

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/655 (51%), Positives = 458/655 (69%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++T+  P+GDQP AI +LL  +    K Q+LLG TG+GKT+T+A VIE   +P +V+ 
Sbjct: 8   FCLKTNLKPAGDQPKAIEELLDNLEKGVKEQVLLGATGTGKTYTIANVIEKHGKPTLVVV 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NKILAAQLY EFK  FP NAVE+F+SYYDYYQPEAY+P  D YIEK++SINE ++R RH
Sbjct: 68  HNKILAAQLYREFKELFPDNAVEFFISYYDYYQPEAYIPEKDLYIEKDASINEVLERYRH 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT S+LER D IVV+SVSCIYG+GS E Y  M +++  G  +   + +  LV+  Y+R 
Sbjct: 128 SATISVLERRDVIVVASVSCIYGLGSPEHYENMRIRVSKGAHLNLTKFVRKLVELGYERN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TF V GD++E+ PS  ED   R+ ++ +++E I+    L    ++ +E +  +
Sbjct: 188 DYAYKRATFSVKGDALEVIPSEAEDYTVRIELWDDEVERIAVIDTLNRHHVKELEEVSFF 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+ PRPT+ +A++ I+ +L+ R+   +K+G+ +EAQRL QR  YDLEM+   G C+
Sbjct: 248 PASHYIAPRPTVESALEEIERDLRERVDWFKKQGKQVEAQRLYQRTMYDLEMIRELGHCK 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY  GR PGEPP TL +Y PED LL VDESH+TIPQI  MY GD  RK  L EY
Sbjct: 308 GIENYSRYFDGREPGEPPFTLLDYFPEDFLLVVDESHMTIPQIRAMYNGDRSRKEKLVEY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           G+RLPS +DNRPL+FEE+       + VSATP  WE+E+ +GI+VEQI+RPTGLVDP VE
Sbjct: 368 GWRLPSALDNRPLKFEEFLERLNQVVYVSATPSDWEIERSKGIVVEQIVRPTGLVDPEVE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q+ED+  EI    ++  R L+   TKR+AE++ +YL ER I+  YMHSE+  +E
Sbjct: 428 VRPTRNQLEDLIREIQERVRRDERALVLTTTKRLAEEVADYLTERKIKATYMHSELDAIE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  I+++LR G   V+VG+NLLREGLD+PE  LVAIL+ADKEGFLRS TSLIQTIGRAAR
Sbjct: 488 RARIVKELREGSVHVVVGVNLLREGLDLPEVSLVAILEADKEGFLRSYTSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILYAD ITKS++ AI+ET RRR+KQ ++N++H I P+S+ + I E+   + LE+
Sbjct: 548 NVNGKAILYADRITKSMERAIEETNRRRKKQRKYNEEHGITPKSIVKPIKEL---LALEE 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                + +   +   +++     ++ L K+M  AA N  FE+AA++RDEIK L++
Sbjct: 605 LDYVKLPLKLPKGIKTEEDLIKRIEKLEKEMWEAAKNWEFEKAAKLRDEIKSLRN 659


>gi|150024988|ref|YP_001295814.1| excinuclease ABC subunit B [Flavobacterium psychrophilum JIP02/86]
 gi|149771529|emb|CAL42998.1| Excinuclease ABC, B subunit [Flavobacterium psychrophilum JIP02/86]
          Length = 663

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/659 (52%), Positives = 469/659 (71%), Gaps = 6/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+Q+DY P GDQP AI +L++GI   EK Q LLGVTGSGKTFT+A VI+ +QRP +V+A
Sbjct: 3   FQVQSDYKPKGDQPQAIEKLVQGITDNEKYQTLLGVTGSGKTFTVANVIQEVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEA++P T  +IEK+ SINE++++MR 
Sbjct: 63  HNKTLAAQLYSEFKQFFPNNAVEYFVSYYDYYQPEAFMPVTGVFIEKDLSINEELEKMRM 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S   SLL  R D IV+SSVSC+YGIG+   + + ++ ++ G  + + +LL  LV+  Y R
Sbjct: 123 STVSSLLSGRRDIIVISSVSCLYGIGNPVEFQKNVIPIEKGQIISRTKLLHQLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++  + G FR+ GD+++I+PS+ +D A+R+  FG++IEEI  F   T Q I   E + I
Sbjct: 183 TEMDFMPGNFRIKGDTVDIYPSYADD-AFRIHFFGDEIEEIESFDVKTTQVIEKFEKLTI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+++L  ++   ++ G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLQNAIWEIQQDLVKQVDYFKEIGKHLEAKRLEERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR+ G  P  L +Y P+D L+ VDESHVT+ Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGRSTGTRPFCLLDYFPKDYLMVVDESHVTLSQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  ++   I VSATP  +EL++  G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEAMQNQVIYVSATPADYELQKTDGVVVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR +  Q++D+ +EI + A+   R+L+T LTKRMAE+L +YL + NIR RY+HSEV TL
Sbjct: 422 EIRPSLNQIDDLIEEIQVRAEIDERVLVTTLTKRMAEELAKYLTKVNIRCRYIHSEVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QTIGRAA
Sbjct: 482 ERIEIMQDLRKGIFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N K I+YAD IT S+Q  IDET  RREKQ+  N  +NI PQ++ +KI        L 
Sbjct: 542 RNLNGKAIMYADKITASMQKTIDETNYRREKQINFNIANNIIPQALNKKIESAFTKNTLV 601

Query: 740 DA----ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           D+     + N++ + +   LSK + +  ++  RK M  AA +L+F +AA++RDEIK L+
Sbjct: 602 DSELGYTSGNMAAEPETEYLSKPEIEKRIRDKRKAMEKAAKDLDFMQAAKLRDEIKDLQ 660


>gi|33241258|ref|NP_876200.1| excinuclease ABC subunit B [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|81835781|sp|Q7V9M1|UVRB_PROMA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|33238788|gb|AAQ00853.1| Helicase subunit of the DNA excision repair complex
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 677

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/673 (51%), Positives = 468/673 (69%), Gaps = 23/673 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           + ++  Y P GDQP AI +L+ G++S  + Q LLG TG+GKTFT+A VI    RPA+V+A
Sbjct: 4   YYLKAPYQPKGDQPKAITKLVDGVNSGREYQTLLGATGTGKTFTIANVIAKTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAYVP +DTYI K SSINE+ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYVPVSDTYIAKTSSINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER+D IVV+S+SCIYG+G    Y +  V+ K+G+ +  ++ L  LV  QY R 
Sbjct: 124 SATRSLFERDDVIVVASISCIYGLGIPSEYLKASVKFKVGNEINLRKSLRELVANQYFRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I RG FRV GD +EI P++ +D   R+ +FG++IE I    P+TG+ + ++  I IY
Sbjct: 184 DFDIGRGKFRVKGDVLEIGPAY-DDRLVRIELFGDEIEAIRYVDPITGEILDSLNCISIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L TA+  I++ELK +L    KEG+LLEAQRLEQR  YDLEML   G C 
Sbjct: 243 PAKHFVTPKERLVTAIDDIQKELKEQLDFFNKEGKLLEAQRLEQRTKYDLEMLREVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L+GR  G PP  L +Y P+D LL +DESHVT  Q+  MY GD  RK  L E+
Sbjct: 303 GVENYARHLSGREAGSPPECLIDYFPKDWLLVIDESHVTCSQLLAMYNGDQSRKKVLIEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ +E+      T+ +SATPG+WELE   G I+EQ+IRPTG++DP VE
Sbjct: 363 GFRLPSAADNRPLKSQEFWNKANQTVFISATPGNWELEISSGAIIEQVIRPTGVLDPLVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + QVED+ DEI   +++  R+L+T LTKRMAEDLT+YL E ++RVRY+HSE+ ++E
Sbjct: 423 VRPTKGQVEDLLDEIRERSRKKQRVLITTLTKRMAEDLTDYLSENDVRVRYLHSEIHSIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII+DLR+G++DVLVG+NLLREGLD+PE  LV ILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK-------IMEV- 732
           ++  K +LYAD  T S++ AI+ET RRR  Q  +N+++NI P    +K        +E+ 
Sbjct: 543 HIEGKALLYADNFTDSMKKAIEETERRRAIQESYNQQNNIVPMPAGKKANNSILSFLELS 602

Query: 733 -------IDPILLEDAATTNISIDAQQLSLSKKKGKAHL----KSLRKQMHLAADNLNFE 781
                  ID  L+E A      +D  + + + +    +L      L  +M  +A +L+FE
Sbjct: 603 RRVQKDGIDNDLVEIAGNV---VDEFKFNNNSELAIENLPQLIDELETKMKKSAKDLDFE 659

Query: 782 EAARIRDEIKRLK 794
            AA++RD+I +L+
Sbjct: 660 NAAKLRDKIHQLR 672


>gi|116071728|ref|ZP_01468996.1| excinuclease ABC subunit B [Synechococcus sp. BL107]
 gi|116065351|gb|EAU71109.1| excinuclease ABC subunit B [Synechococcus sp. BL107]
          Length = 679

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/671 (51%), Positives = 454/671 (67%), Gaps = 19/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   Y P GDQP AI QL+ G++  E+ Q LLG TG+GKTFTMA VI    RPA+V+A
Sbjct: 4   FDLTAPYSPKGDQPTAITQLVDGVNGGERYQTLLGATGTGKTFTMANVIAQTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPENAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G ++  +  L  LV  QY R 
Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGATLNIRGQLRELVNNQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I RG FR+ GD +EI P++ +D   R+ +FG+++E I    P TG+ ++++E + IY
Sbjct: 184 DTEIARGRFRMKGDVLEIGPAY-DDRLVRIELFGDEVEAIRYVDPTTGEILQSLEEVNIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L+ A+K I+ EL+ RL  L  EG+LLEAQRLEQR  YDLEML+  G C 
Sbjct: 243 PAKHFVTPKDRLDDAIKAIRTELRDRLDFLNGEGKLLEAQRLEQRTKYDLEMLDQVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L ++
Sbjct: 303 GVENYARHLAGREAGTPPECLIDYFPDDWLLIVDESHVTCSQLQAMYNGDQARKKVLVDH 362

Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           GFRLPS  DNRPL+  E W   R  T+ VSATPG+WELE   G + +Q+IRPTG++DP +
Sbjct: 363 GFRLPSAADNRPLKGAEFWEKAR-QTVFVSATPGNWELEVSTGQVAQQVIRPTGVLDPLI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    QV+D+  EI   A +  R+L+T LTKRMAEDLT+YL E   RVRY+HSE+ ++
Sbjct: 422 EVRPTTGQVDDLLGEIRDRAAKNQRVLVTTLTKRMAEDLTDYLAENGTRVRYLHSEIHSI 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAA
Sbjct: 482 ERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           R+V  K +LYA+ +T S+  AID T +RR+ Q  +N++HNI P +  +K    I   L  
Sbjct: 542 RHVEGKALLYAENMTDSMLKAIDVTEKRRKIQQTYNEEHNIVPTAAGKKASNSILSFLEL 601

Query: 740 DAATTNISIDAQQLSLSKKKGKA----------------HLKSLRKQMHLAADNLNFEEA 783
                    DA  + ++ K  +A                 +  L  +M  AA  L+FEEA
Sbjct: 602 SRKLKQDGPDADLVEVAGKAVRALENDADAGLALEALPELIDQLESKMKDAAKKLDFEEA 661

Query: 784 ARIRDEIKRLK 794
           A +RD +K+L+
Sbjct: 662 ANLRDRVKQLR 672


>gi|163790858|ref|ZP_02185283.1| excinuclease ABC subunit B [Carnobacterium sp. AT7]
 gi|159873926|gb|EDP68005.1| excinuclease ABC subunit B [Carnobacterium sp. AT7]
          Length = 664

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/650 (53%), Positives = 462/650 (71%), Gaps = 1/650 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQPAAI +L+ GI S  K Q LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 6   FELVSKYQPSGDQPAAIKKLIAGIESGTKEQTLLGATGTGKTFTVSNVIKEVNKPTLVIA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEKESS+N++ID++RH
Sbjct: 66  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKESSVNDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D IVV+SVSCIYG+ + E Y   ++ L++G  + + E+L  LV  Q++R 
Sbjct: 126 SATSALLERRDVIVVASVSCIYGLVNPEDYRDHVLSLRVGAEMNRDEMLRRLVDMQFERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIF +  +  A RV  FG++I+ I E   LTG+   +V+ + I+
Sbjct: 186 DIDFQRGRFRVRGDVVEIFLASRDSEAIRVEFFGDEIDRIREVDVLTGEVKADVQHVPIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+V       +A+K I+EEL+ RL EL  E +L+EAQRLEQR  YDLEML   G C 
Sbjct: 246 PATHFVANDEQTRSAIKNIQEELEERLKELRAEDKLIEAQRLEQRTNYDLEMLLEMGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 306 GIENYSRHMDGRKPGEAPYTLIDFFPDDFLIVIDESHITMSQIRGMYNGDRARKQQLIDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + +SATPG +ELE+   +I EQIIRPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLRLEEFENHVNQIMYISATPGPYELERAPEVI-EQIIRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN  +++  R+ +T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 425 VRPIKGQIDDLIGEINERSEKNERVFITTLTKKMSEDLTDYLKEVGIKVAYLHSEIKTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG +DVL+GINLLREG+D+PE  LV ILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 485 RTEIIRDLRLGVYDVLIGINLLREGIDVPEVSLVIILDADKEGFLRSERSLVQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT S++ AI ET RRRE Q E+N+KH I P+++ + I ++I    +  
Sbjct: 545 NENGRVIMYADRITDSMRAAISETGRRRETQEEYNEKHGITPKTIIKDIRDLISITSVVK 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                 S       +++ +    +  L  +M +AA  LNFE+AA +RD +
Sbjct: 605 GDDEGASGLENIAKMTRAQRLELIDGLELEMKVAAKELNFEKAANLRDMV 654


>gi|88802767|ref|ZP_01118294.1| excinuclease ABC subunit B [Polaribacter irgensii 23-P]
 gi|88781625|gb|EAR12803.1| excinuclease ABC subunit B [Polaribacter irgensii 23-P]
          Length = 662

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/664 (51%), Positives = 469/664 (70%), Gaps = 13/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L  GI++ EK Q LLGVTGSGKTFT+A VI+ +++P +V+A
Sbjct: 3   FKLVSEFSPTGDQPQAIQELSDGINTGEKFQTLLGVTGSGKTFTVANVIQEVRKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P T TYIEK+ SINE I+R+R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPVTGTYIEKDLSINEDIERLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D +V++SVSC+YGIG+   + + ++ +++G  + + + L  LV+  Y R
Sbjct: 123 STTSSLLSGRRDVLVIASVSCLYGIGNPTEFKKNVIPVQVGQLISRTKFLHQLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +  I  GTF+V GD + I+PS+  D  +R+  FG+++EEI  F   +   I   E + I
Sbjct: 183 TEHEIKSGTFKVKGDVVTIYPSY-GDNGYRIHFFGDEVEEIELFDLESNAIINTFEELSI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+ +I+E++  ++   E+ GR LEA+R+++R  +DLEM+   G C
Sbjct: 242 YPANLFVTSPDVLQNAIHHIQEDMVKQVAYFEEIGRSLEAKRIKERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR+PG  P  L +Y P+D L+ +DESHVT+PQ   MY GD  RK  L +
Sbjct: 302 SGIENYSRYLDGRDPGTRPFCLLDYFPDDYLMIIDESHVTVPQTHAMYGGDRSRKENLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  ++  TI VSATP  +EL++ +G+ VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEAIQNQTIFVSATPADYELQKTEGVFVEQIIRPTGLLDPMI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LT+YL   NIR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLIEEIQIRIEKDERTLVTTLTKRMAEELTKYLTRVNIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR+  SL QTIGRAA
Sbjct: 482 ERVEILQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRNVKSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN   ILYAD +TKS+Q  IDET RRREKQ+ +N  +N+ P  +K+K    ID  L +
Sbjct: 542 RNVNGLAILYADKMTKSMQKTIDETDRRREKQIAYNTANNMVPTQIKKK----IDDTLTK 597

Query: 740 DAATTNISIDAQQLS-------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            A ++    +A+Q++       L K++ +  ++  RKQM  AA  L+F  AA++RDEI  
Sbjct: 598 TAVSSYHYDNAKQVAAEQDLQYLPKEEIEKRIRDKRKQMEAAAKELDFVVAAKLRDEIAL 657

Query: 793 LKSS 796
           LK S
Sbjct: 658 LKES 661


>gi|91215169|ref|ZP_01252141.1| excinuclease ABC subunit B [Psychroflexus torquis ATCC 700755]
 gi|91186774|gb|EAS73145.1| excinuclease ABC subunit B [Psychroflexus torquis ATCC 700755]
          Length = 668

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/666 (51%), Positives = 468/666 (70%), Gaps = 20/666 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++D+ P+GDQP AI +L+KG+H+ E+ Q LLGVTGSGKTFTMA V+E +QRP +V+A
Sbjct: 3   FTLKSDFKPAGDQPQAIDKLVKGLHNNERYQTLLGVTGSGKTFTMANVVEEVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP +AVEYFVSYYDYYQPEA++P + TYIEK+ SIN++I+++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPDSAVEYFVSYYDYYQPEAFIPSSGTYIEKDLSINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IVV+SVSC+YGIG+   + + ++ +++   + + +LL  LV+  Y R
Sbjct: 123 STTSSLLSGRRDVIVVASVSCLYGIGNPAEFQKNVISIEVDQQISRTKLLQRLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +    RG FR+ GD++++FP +  D A+R+  FG++IEEI  F   T + +   + + I
Sbjct: 183 TEALFNRGNFRIKGDTLDVFPGY-ADHAYRIHFFGDEIEEIEAFDVETKEVMAKYDKLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    LN A+  I  +L  ++   +  G+ LEA+R+E+R  +DLEM++  G C
Sbjct: 242 YPANIFVTSPDILNQAIDQIAIDLGKQIEYFKDIGKPLEAKRIEERTNFDLEMIKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ VDESHVTIPQ+  MY GD  RK  L +
Sbjct: 302 SGIENYSRYLDGRKPGTRPFCLIDYFPDDFLMIVDESHVTIPQVGAMYGGDRSRKENLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPLR EE+  L+   + VSATP  +EL++  G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLRLEEYEALQNQVVYVSATPADYELQKSGGVVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R ++ Q++D+ +EIN+   +  RIL+T LTKRMAE+L++YL    IR RY+HS++ TL
Sbjct: 422 EVRPSQNQIDDLIEEINIRVDKDQRILVTTLTKRMAEELSKYLTRVKIRTRYIHSDIDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  +L QTIGRAA
Sbjct: 482 ERVEIMSDLRKGVFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRTLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI---------- 729
           R++  K ILYAD IT S+Q  +D+T  RR+KQ+++N KHNI PQ+VK+ +          
Sbjct: 542 RHLEGKGILYADKITVSMQKTMDQTDYRRQKQIDYNIKHNITPQAVKKSLDSALSGKKKE 601

Query: 730 -MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
             EVI+   LE AA   ++      + S+   K  +  +RK M  AA +L+F EAAR RD
Sbjct: 602 PYEVIEMPTLE-AAEEAVA------NYSESDLKKRMTKVRKSMEKAAKDLDFMEAARFRD 654

Query: 789 EIKRLK 794
           E+K L+
Sbjct: 655 ELKMLQ 660


>gi|238927286|ref|ZP_04659046.1| excision endonuclease subunit B [Selenomonas flueggei ATCC 43531]
 gi|238884873|gb|EEQ48511.1| excision endonuclease subunit B [Selenomonas flueggei ATCC 43531]
          Length = 680

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/657 (54%), Positives = 461/657 (70%), Gaps = 3/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P GDQP AIA L  GI +    Q+LLG TG+GKT+TMAKVIE +QRP +V+A
Sbjct: 18  FKVVAPFEPMGDQPQAIADLAGGIENGMTAQVLLGATGTGKTYTMAKVIERVQRPTLVIA 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK+FFP N V YFVSYYD+YQPEAY+ +TDTYIEK++SIN++ID +RH
Sbjct: 78  HNKTLAAQLASEFKSFFPDNYVGYFVSYYDFYQPEAYIAQTDTYIEKDASINDEIDELRH 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+GS ESY +M++ +  G ++ ++E+L  L+  +Y+R 
Sbjct: 138 SATCSLFERRDVIIVASVSCIYGLGSPESYHEMVLSVHKGQTITREEILQKLISIRYERN 197

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD IEIFP+   +   R+ MFG+++E I EF   TG+         ++
Sbjct: 198 DIAFERGRFRVRGDVIEIFPAGYNNRGVRIEMFGDEVERIIEFDVTTGEVYGERLHSMVF 257

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    +  AM  I+ EL+ RL  L+ EG+LLEAQRLEQR  YDLEM++  G C 
Sbjct: 258 PASHYVTDDEDMKIAMADIRTELEERLAVLKGEGKLLEAQRLEQRTNYDLEMMQEMGYCS 317

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PG  P TL +Y PED L+ +DESHVT+PQI  MY GD  RK +L + 
Sbjct: 318 GIENYSRHLTHRAPGATPYTLLDYFPEDFLIMIDESHVTLPQIHAMYGGDRSRKVSLVDN 377

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       + VSATPG +E++Q Q  + +QIIRPTGL+DP VE
Sbjct: 378 GFRLPSAFDNRPLTFEEFAARINQIVYVSATPGKYEMQQAQ-QVAQQIIRPTGLLDPEVE 436

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI L   +  R+L+T LTKRMAE+LTEYL E  ++VRY+HS++ T+E
Sbjct: 437 VRPLAGQIDDLMGEIRLRIGRNERVLVTTLTKRMAENLTEYLREAGVKVRYLHSDIATIE 496

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EII DLR G+FDVLVGINLLREGLD+PE  L+AILDADKEGFLRS T+LIQTIGRAAR
Sbjct: 497 RAEIIHDLRAGEFDVLVGINLLREGLDMPEVSLIAILDADKEGFLRSDTALIQTIGRAAR 556

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           N    VI+Y D IT S+Q AIDET RRR  Q E+N++H I P+++ + I+ +I+  L+  
Sbjct: 557 NAGGHVIMYGDVITGSMQRAIDETERRRAIQQEYNEEHGIVPKTIVKPIVPLIEMTLVAA 616

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           ED +         +  L KK+ +  +KSL ++M  A+  L FE AA +RD I  L+ 
Sbjct: 617 EDKSPYGKKDGKAKKKLGKKERENLVKSLLREMRQASRALEFERAAELRDMIVELEG 673


>gi|189485388|ref|YP_001956329.1| UvrABC system protein B [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287347|dbj|BAG13868.1| UvrABC system protein B [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 672

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/663 (51%), Positives = 468/663 (70%), Gaps = 9/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L     + +  Q+LLGVTGSGKTF MA VIE +Q+P ++++
Sbjct: 5   FKLISKFKPSGDQPQAIDKLYHNYLNNKNSQILLGVTGSGKTFVMASVIEKLQKPTLIIS 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNKILAAQ Y+EFK FFP+N+VEYF+SYYDYYQPEAY+P +DTYIEK++SIN+ IDR+R 
Sbjct: 65  PNKILAAQTYAEFKAFFPNNSVEYFISYYDYYQPEAYIPSSDTYIEKDASINDHIDRLRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT S+LER D IVV+SVSCIY +GS + Y  M V++  G       LL+ L+  +Y+R 
Sbjct: 125 KATTSILERKDVIVVASVSCIYNLGSPKDYQNMCVEIIAGKEKTISLLLTELIASRYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RG FRV GD++EIFP++LE  A ++   G+ +E I EF P+TG+ I   +   IY
Sbjct: 185 EVEFKRGKFRVKGDTVEIFPAYLE-TAVKIEFCGDTVERIKEFNPVTGEVISKKDKAYIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               +VT +  ++ A+K I+ EL  RL  L+ + + LEAQRLEQR  YD+EML+ TGSC 
Sbjct: 244 PAKLFVTDKYKVDKALKTIQIELNTRLEVLKSQNKFLEAQRLEQRTKYDIEMLKETGSCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENYSR+L+G   G  P TL +Y     +D L+  DESH+++PQI GMY GD  RK TL
Sbjct: 304 GIENYSRHLSGGLSGAKPTTLIDYFVQENDDFLIITDESHISLPQIRGMYEGDRSRKQTL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS +DNRPL+F+E+  +    ++VSATPG++EL + +  IV+ IIRPTGLVDP
Sbjct: 364 VDFGFRLPSALDNRPLKFQEFEKVIRKFMMVSATPGTYELNRSKKYIVDLIIRPTGLVDP 423

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + IR    Q++D+  EI    ++  R L+T LTK+M+EDL  YL E+  +V Y+HSE+ 
Sbjct: 424 EIVIRPISGQIQDLMQEIRKNVEKKQRTLVTTLTKKMSEDLAAYLKEKGFKVEYLHSEID 483

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TL RIEI+++LRLGKFDVLVGINLLREGLD+PE  LV +LDADKEGFLRS+ +LIQ  GR
Sbjct: 484 TLTRIEILKNLRLGKFDVLVGINLLREGLDLPEVSLVVVLDADKEGFLRSEPTLIQICGR 543

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN++ +VI YADT+T S+Q A+ E  RRR+KQLEHNKK+NI P+S+ + + E+ +   
Sbjct: 544 AARNIDGRVIFYADTVTGSMQRALREMNRRRDKQLEHNKKNNIKPKSIIKAVHELDEFRN 603

Query: 738 LEDAATTNISIDAQQL--SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD---EIKR 792
           L    + N  +  +QL  +++ K     +K +  QM  +ADNL+FE AA +RD   E+K 
Sbjct: 604 LSREESMNHIVAEEQLNYNITPKNIGNIIKEVELQMRESADNLDFESAAALRDRMLELKN 663

Query: 793 LKS 795
           +KS
Sbjct: 664 MKS 666


>gi|24213349|ref|NP_710830.1| excinuclease ABC subunit B [Leptospira interrogans serovar Lai str.
           56601]
 gi|45658769|ref|YP_002855.1| excinuclease ABC subunit B [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|59799051|sp|Q72N95|UVRB_LEPIC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|59799069|sp|Q8F8A9|UVRB_LEPIN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|24194097|gb|AAN47848.1| excinuclease ABC subunit B [Leptospira interrogans serovar Lai str.
           56601]
 gi|45602013|gb|AAS71492.1| nucleotide excision repair subunit B [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 666

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/654 (52%), Positives = 457/654 (69%), Gaps = 4/654 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++ + Y P+GDQ  AI  +       EK   L+GVTGSGKTFTMA+VI+ +  P +V
Sbjct: 3   SVFKIHSAYQPAGDQVKAIQNIADSFQKGEKKVTLVGVTGSGKTFTMAQVIQNLGLPTLV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           ++ NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE+ID++
Sbjct: 63  LSHNKTLAAQLFREFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEEIDKL 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R  AT SLLER D ++VSSVSCIYG+GS E Y+  +V LK+GD++E+  ++  L+  QY 
Sbjct: 123 RLRATSSLLEREDVVIVSSVSCIYGLGSPEEYTNSVVALKVGDTIERDTVIRKLLHIQYN 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG FRV GDSIEI+P++  D   R+  FG++I+ IS   P+T Q I  +E   
Sbjct: 183 RNDLDFSRGNFRVRGDSIEIYPAYHTD-GIRIEFFGDEIDSISRINPVTAQTIFKLEKAY 241

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY   H++T  P +  A++ I+ E+  +     K  +LLEA+R+  R  YD+EML+  G 
Sbjct: 242 IYPAKHFITSGPKVKEAVENIRAEVDAQTDFFRKNNKLLEAERILSRTNYDMEMLQEMGY 301

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+LTGR PGE P  L +Y   + LL VDESHVTIPQI GM+ GD  RK TL 
Sbjct: 302 CNGIENYSRHLTGRKPGERPACLIDYFQGEFLLIVDESHVTIPQIGGMFAGDRARKQTLV 361

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS +DNRPL F+E+  L P T+ VSATP  +E+E+    +VEQIIRPTGL+DP 
Sbjct: 362 DFGFRLPSALDNRPLNFQEFETLTPRTLYVSATPAEYEIEKSSK-VVEQIIRPTGLLDPI 420

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V++R  + Q+ED+  EI      G R+L+T LTK+M+EDLT+Y  E  ++V Y+HSEV+T
Sbjct: 421 VDVRPTKNQIEDLLVEIRKRIDAGERVLVTTLTKKMSEDLTDYYEEIGLKVAYLHSEVET 480

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L+R+ IIRDLR G +DVL+GINLLREGLDIPE  LVAILDADKEGFLR+  SLIQTIGRA
Sbjct: 481 LDRVGIIRDLRKGIYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLIQTIGRA 540

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD  T S+  AI+ET RRR+ Q +HN K  I P ++K+++ ++I+    
Sbjct: 541 ARNVNGTAILYADKTTDSMAKAIEETKRRRKIQEDHNLKFGITPLTIKKEVGDIIEREEK 600

Query: 739 EDAATTNISIDAQQLSLSKK-KGKAHLK-SLRKQMHLAADNLNFEEAARIRDEI 790
           E  +   +  D ++   SKK   K  LK  LR++M  AA  L+FE AA +RD++
Sbjct: 601 ERTSEDLVLEDVEKKFNSKKFPNKEVLKEKLREEMMKAAKELDFERAAILRDKM 654


>gi|124009064|ref|ZP_01693748.1| excinuclease ABC, B subunit [Microscilla marina ATCC 23134]
 gi|123985384|gb|EAY25299.1| excinuclease ABC, B subunit [Microscilla marina ATCC 23134]
          Length = 672

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/668 (50%), Positives = 471/668 (70%), Gaps = 14/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ +D+ P GDQP AI QL+ GI + EK Q LLGVTGSGKTFT A V+  + RP +V++
Sbjct: 2   YKLVSDFDPMGDQPKAIEQLIHGIKNGEKAQTLLGVTGSGKTFTAANVVAQLNRPTLVLS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEA++P T TYIEK+ SIN +I+++R 
Sbjct: 62  HNKTLAAQLYGEFKQFFPDNAVEYFISYYDYYQPEAFLPTTGTYIEKDLSINSEIEKLRL 121

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT +LL  R D +VV+SVSCIYGIG+ E + + ++ LK+GD + + + L +LV   Y R
Sbjct: 122 SATSALLSGRRDVLVVASVSCIYGIGNPEEFGKNVISLKVGDEISRNKFLFALVDILYSR 181

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            + G  RG FRV GD+I+IF ++ +D A+R+  FG+++E I    P T QK+     I I
Sbjct: 182 TEAGFERGNFRVKGDTIDIFVAY-DDFAFRIFFFGDEVEAIHRIDPETNQKLSEETAISI 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VT +  L+ A+K I++++  +++  EKE R+ EA+R+++R  +DLEM+   G C
Sbjct: 241 FPANLFVTGQDVLHQAIKEIQDDMVKQVLYFEKENRVEEAKRIKERTEFDLEMMRELGYC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +ENYSRY   RNPG  P  L +Y P+D LLF+DESHVT+PQI GMY GD  RK  L +
Sbjct: 301 SGVENYSRYFDRRNPGSRPFCLLDYFPDDYLLFIDESHVTLPQIRGMYGGDRSRKTNLVD 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL F+E+  +    I +SATP  +ELE+ +G+IVEQ+IRPTG++DP +
Sbjct: 361 YGFRLPSALDNRPLNFQEFETMMNQVIYISATPAEYELEKSEGVIVEQLIRPTGVIDPEI 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R +  Q++D+ +EI+   +   R+L+T LTKRMAE+L++YL   +I   Y+HS+VK L
Sbjct: 421 FVRPSLNQIDDLLEEIDATLKDDGRVLVTTLTKRMAEELSKYLDRLDINCTYIHSDVKPL 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R LRLG+ DVL+G+NLLREGLD+PE  LVAI+DADKEGFLR++ SLIQTIGRAA
Sbjct: 481 ERVEILRQLRLGEIDVLIGVNLLREGLDLPEVSLVAIIDADKEGFLRNERSLIQTIGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIM---EVI 733
           RN   KVILYAD +T S++ A++ET RRR+ Q E+NKKHNI P++V   KE IM    V 
Sbjct: 541 RNEKGKVILYADKMTGSMERAMNETQRRRKVQDEYNKKHNITPKTVRKSKEAIMGQTNVA 600

Query: 734 DPILLEDAA------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           D      A       T N++ D     +++   +  +K+ +K M  AA +L+F EAAR+R
Sbjct: 601 DKRKKAGANYYTAPDTINMAADPVVSYMTQDDLQKLIKTTQKAMEKAAKDLDFMEAARLR 660

Query: 788 DEIKRLKS 795
           DE+  LK+
Sbjct: 661 DELADLKT 668


>gi|305664821|ref|YP_003861108.1| excinuclease ABC subunit B [Maribacter sp. HTCC2170]
 gi|88707943|gb|EAR00182.1| excinuclease ABC subunit B [Maribacter sp. HTCC2170]
          Length = 663

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/664 (51%), Positives = 467/664 (70%), Gaps = 15/664 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI QL +GI+S+E  Q LLGVTGSGKTF++A VIE +QRP +V+A
Sbjct: 3   FKVVSEFKPTGDQPEAIRQLEEGINSQEPYQTLLGVTGSGKTFSVANVIEKVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P +  YIEK+ SINE I+++R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPNNAVEYFVSYYDYYQPEAYIPTSGLYIEKDLSINEDIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT SLL  R D +VV+SVSC+YGIG+   + + ++ +     + + +LL  LV+  Y R
Sbjct: 123 SATSSLLSGRRDVLVVASVSCLYGIGNPVEFQKNVISIFKNQVIARTKLLHMLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                  G FRV GD +++FPS+  D A+R+  FG++IEEI  F P     I   E + I
Sbjct: 183 TTADFRNGNFRVKGDVVDVFPSY-ADHAFRIHFFGDEIEEIEAFDPFNNNVIEVYENLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+ YI+++L  ++   ++ G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDILQNAIHYIQDDLVHQIDYFKEIGKPLEAKRLEERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ +DESHVTIPQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVIDESHVTIPQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL+ CQG+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQLCQGVYVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI    ++  R L+T LTKRMAE+LT+YL   N+R RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLVEEIQQRVEKDERTLVTTLTKRMAEELTKYLSRINVRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGIFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           R++N K I+YAD IT S+Q  IDET  RREKQ+ +N  +N+ P+++ +     +D +L +
Sbjct: 542 RHLNGKAIMYADKITASMQKTIDETNYRREKQIAYNTANNVTPKALNKS----LDSVLAK 597

Query: 740 DAATTNISIDAQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           ++ +T    + ++L         L+K++ +  ++  RK M  AA  L+F +AA++RDEIK
Sbjct: 598 NSVST-YHFEKEELRAAEPDMDYLTKEQIEKMIRDKRKAMEKAAKELDFMQAAKLRDEIK 656

Query: 792 RLKS 795
            L++
Sbjct: 657 MLQN 660


>gi|313206739|ref|YP_004045916.1| excinuclease ABC, b subunit [Riemerella anatipestifer DSM 15868]
 gi|312446055|gb|ADQ82410.1| excinuclease ABC, B subunit [Riemerella anatipestifer DSM 15868]
 gi|325335821|gb|ADZ12095.1| Helicase subunit of the DNA excision repair complex [Riemerella
           anatipestifer RA-GD]
          Length = 678

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/672 (50%), Positives = 472/672 (70%), Gaps = 23/672 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L+ GI   +  Q LLGVTGSGKTFT+A V+  +QRP IV+A
Sbjct: 15  FKLHSEFKPTGDQPQAIDKLVSGIEQGQPYQTLLGVTGSGKTFTIANVVNTVQRPTIVLA 74

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEAY+  T TYIEK+ SINE+++++R 
Sbjct: 75  HNKTLAAQLFMEFKEFFPENAVEYFVSYYDYYQPEAYIASTGTYIEKDLSINEEVEKLRL 134

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT SLL  R D ++V+SVSCIYGIG+   +++ +++L++   + + +LL  LV   Y R
Sbjct: 135 SATTSLLSGRRDVLIVASVSCIYGIGNPTEFNKSLIELELQSKISRTDLLHKLVNALYSR 194

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                +RG+FRV GD I+IFP++  D A R+  FGN+I++I  F P++G  + + + I I
Sbjct: 195 AVNEFVRGSFRVKGDVIDIFPAY-ADNAIRIRFFGNEIDKIQSFDPISGSIMGDFDKINI 253

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT + T+N+A++ I+++L  ++    + G+ LEA+RL++R   DLEM++  G C
Sbjct: 254 YPANLFVTSKETMNSAIREIQDDLVKQVDFFNEIGKNLEAKRLKERTELDLEMIKELGYC 313

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY+ GRNPG  P  L +Y P D L+ +DESHVTIPQ+  MY GD  RK  L E
Sbjct: 314 SGIENYSRYMDGRNPGSRPFCLLDYFPNDYLMVIDESHVTIPQVHAMYGGDRSRKENLVE 373

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  ++   I VSATP  +ELE+ QG  VEQIIRPTGL+DP +
Sbjct: 374 YGFRLPAAMDNRPLKFEEFESMQNQVIYVSATPADYELEKTQGEYVEQIIRPTGLLDPII 433

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+ +EI   A++  R+L+T LTK+MAE+LT+Y  +  IR RY+HS+V TL
Sbjct: 434 EVRPTLNQIDDLMEEIQKRAEEDERVLVTTLTKKMAEELTKYFTKFGIRTRYIHSDVDTL 493

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERI+I++DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEG LRS+ S+IQT+GRAA
Sbjct: 494 ERIQIMQDLRAGLFDVLVGVNLLREGLDLPEVSLVAILDADKEGMLRSRRSMIQTVGRAA 553

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV------- 732
           RN+N K I+YAD +TKS+Q  IDET  RREKQ+ +N+ + + PQ + +KI +V       
Sbjct: 554 RNINGKAIMYADKMTKSMQATIDETNYRREKQMSYNEANGLIPQPLNKKISDVLVGHTPD 613

Query: 733 ------IDPILLEDAATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
                 I   +++  A T +S  +A+ L       +  +   +KQM  AA  L+F  AA+
Sbjct: 614 FPKQEYIQKEIVKQVAETKVSYGNAEDL-------EKIIAEKQKQMEAAAKQLDFILAAK 666

Query: 786 IRDEIKRLKSSP 797
           +RDEIK LK +P
Sbjct: 667 LRDEIKALKGTP 678


>gi|161507208|ref|YP_001577162.1| excinuclease ABC subunit B [Lactobacillus helveticus DPC 4571]
 gi|160348197|gb|ABX26871.1| Excinuclease ABC (subunit B) [Lactobacillus helveticus DPC 4571]
          Length = 682

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/659 (50%), Positives = 463/659 (70%), Gaps = 4/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + +P +V+ 
Sbjct: 10  FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIANLNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L+ERND IVV+SVS IYG+G  + Y++ ++ +  G   ++  LL  LV  QY R 
Sbjct: 130 ATTSALMERNDVIVVASVSSIYGLGDPKEYARSVLMIHEGQEYDRNMLLRDLVNLQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   + A+R+  FG++I+ I E   LTG+ I   E+I ++
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGNSNHAYRIEFFGDEIDRIVEIDSLTGEVIGERESISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    L  A+K I +E+K+++ + E EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFVTNDDQLRRALKAISKEMKVQVKKFEGEGKLLEAERIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L  +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLTLIDESHATMPEIRAMYNGDRNRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVHQILYVSATPGDYELERTNH-KVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN       R+ +T LTK+MAEDLT+YL +  I+V+Y+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVGEINKRIDCNERVFVTTLTKKMAEDLTDYLKDLGIKVQYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+QT+GRAAR
Sbjct: 489 RMKILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N N +VI+YADTIT S++ AI+ T RRR+ Q E NK++ I P+++ + + +VI    P  
Sbjct: 549 NANGEVIMYADTITDSMRAAINATKRRRKIQEEFNKEYGITPKTIIKPVQDVISITKPSS 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +    ++   D     L+  + K  +K+L++QM  AA  L+FEEAA +RD I  L+ S
Sbjct: 609 GDRDKKSDSFADLNFDELTASQKKTMIKNLQEQMKEAAKKLDFEEAANLRDAIIDLQKS 667


>gi|159904316|ref|YP_001551660.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9211]
 gi|238687131|sp|A9BD93|UVRB_PROM4 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|159889492|gb|ABX09706.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str. MIT
           9211]
          Length = 679

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/670 (51%), Positives = 464/670 (69%), Gaps = 17/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           + + + Y P GDQP AI++L+ G++  ++ Q LLG TG+GKTFT+A VIE   RP +V+A
Sbjct: 4   YHLNSPYLPKGDQPKAISELVYGVNQGKQYQTLLGATGTGKTFTIANVIEQTGRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K SS+NE+ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTSSVNEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G+ +  +E L  LV  QY R 
Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKASVKFQLGNDINVRESLRELVSNQYVRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ I RG FR+ GD +EI P++ ED   R+ +FG+++E I    P+TG+ + N+ +I IY
Sbjct: 184 DVDISRGNFRIKGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPITGEILENLNSINIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L  A++ I++ELK +L    +EG+LLEAQRLEQR  YD+EML+  G C 
Sbjct: 243 PAKHFVTPKDRLLIAIQSIQKELKDQLDFFNQEGKLLEAQRLEQRTKYDIEMLKEVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L+GR+ G PP  L +Y PED LL VDESHVT  Q+  MY GD  RK  L ++
Sbjct: 303 GVENYARHLSGRDQGTPPECLIDYFPEDWLLVVDESHVTCSQLQAMYNGDQSRKKVLIDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ +E+      T+ +SATPG WE E     IVEQ+IRPTG++DP VE
Sbjct: 363 GFRLPSAADNRPLKSDEFWSKAKQTVFISATPGDWECEVSTDGIVEQVIRPTGVLDPVVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ DEI     +  R+L+T LTKRMAEDL++YL E  ++VRY+HSE+ ++E
Sbjct: 423 VRPTAGQIDDLLDEIRKRVIKKERVLITTLTKRMAEDLSDYLSENRVKVRYLHSEIHSIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII+DLR+G++DVLVG+NLLREGLD+PE  LV ILDADKEGFLR+K SLIQTIGRAAR
Sbjct: 483 RIEIIQDLRVGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAKRSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V+   +LYAD +T+S+  AI ET RRR  Q  +N+KH I P+   +K    I   L   
Sbjct: 543 HVDGFALLYADNLTESMSTAIQETERRRAIQQAYNQKHGIIPKPAGKKPSNSILSFLELS 602

Query: 741 AATTNISIDAQQLSLSKKK----------GKAHLK------SLRKQMHLAADNLNFEEAA 784
               N   +A  +S++ K           G A ++       L  +M+LAA+ L+FE+AA
Sbjct: 603 RKLQNEGDNADLVSITSKAVDSLNQSEDLGIAFVELPEIIDKLEGKMNLAAEELDFEQAA 662

Query: 785 RIRDEIKRLK 794
           ++RD I++L+
Sbjct: 663 KLRDRIRQLR 672


>gi|298253842|ref|ZP_06977429.1| helicase subunit of the DNA excision repair complex [Gardnerella
           vaginalis 5-1]
 gi|297531985|gb|EFH70960.1| helicase subunit of the DNA excision repair complex [Gardnerella
           vaginalis 5-1]
          Length = 704

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/686 (51%), Positives = 473/686 (68%), Gaps = 36/686 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++  Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 12  FVVKAPYKPSGDQPQAIDELANRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 72  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R DC+VV++VSCIYG+G+ E Y++ ++ L +G+ +E+ +LL   V  QYKR 
Sbjct: 132 AATANLLTRRDCVVVATVSCIYGLGTPEEYAERMLMLSVGEQLERDDLLRQFVSMQYKRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ I+  +PLTG+ IR   ++ I+
Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRITMLHPLTGEVIRQESSVHIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+     +  A+K I++E   R+ +L+K+ +LLEAQRLE R TYDLEML   G C 
Sbjct: 251 PASHYIAGPERMECAVKAIEKERDERVAQLKKQNKLLEAQRLEMRTTYDLEMLRQVGVCP 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR  G PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 311 GVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVLDESHVTVPQIGAMYEGDASRKRTLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+++E+      T+ +SATPG +EL    G +VEQIIRPTGL+DP +E
Sbjct: 371 GFRLPSAMDNRPLKWKEFLEHVGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLLDPKIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI     +  R+L+T LTK+MAEDLT+Y  E  I+V Y+HS+V TL 
Sbjct: 430 VRPVEGQVDDLLAEIKARVAKDERVLVTTLTKKMAEDLTDYFLELGIKVEYLHSDVDTLR 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  V++YADT+T ++  AI ET RRREKQ+ +NK H I+P+ +++KI +V D +  ED
Sbjct: 550 NVSGTVLMYADTVTDAMSKAISETERRREKQIAYNKAHGIDPKPLRKKISDVNDMLAKED 609

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------------------------------LKSLR 768
             T  +   A     + K G +H                                +K+L 
Sbjct: 610 VDTQTLL--AGGYRNANKAGNSHYGVPKEPNLGQQSKEKRMANISELPQDDIMSLIKNLS 667

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLK 794
           +QMH+AA+ L FE AAR+RDEI+ LK
Sbjct: 668 EQMHVAAEQLQFELAARLRDEIRDLK 693


>gi|303233429|ref|ZP_07320098.1| excinuclease ABC, B subunit [Atopobium vaginae PB189-T1-4]
 gi|302480558|gb|EFL43649.1| excinuclease ABC, B subunit [Atopobium vaginae PB189-T1-4]
          Length = 772

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/592 (55%), Positives = 431/592 (72%), Gaps = 2/592 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y P GDQ +AI +L  G+ + ++ Q LLGVTGSGKTFTMA VI+  Q+P +++ 
Sbjct: 23  FDIESRYTPRGDQVSAIEKLSYGVTNNKRYQTLLGVTGSGKTFTMANVIQQTQKPTLIIE 82

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ+ SE K  FPHNAV YFVSYYDYYQPEAYVP+TDTYIEK+SSINE+++++RH
Sbjct: 83  PNKTLAAQVASEMKELFPHNAVVYFVSYYDYYQPEAYVPQTDTYIEKDSSINEEVEKLRH 142

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
             T SLL R DCIVV+SVSCIYGIGS + Y+ +   +     +E+ + + SL+  QY+R 
Sbjct: 143 QTTSSLLSRRDCIVVASVSCIYGIGSPQDYAGLAPNVDKTQPLERDDFIRSLIDIQYERN 202

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ ++RGTFRV GD++++FP + E    R+  FG+++E I+E   L G   R  + I I+
Sbjct: 203 DVDLVRGTFRVRGDAVDVFPPYAER-PIRIVFFGDEVETIAEIDALNGTIEREFDAIPIW 261

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT RP + +A+  I++EL+ R+ EL+    L+EAQRL QR +YD+EMLET G C 
Sbjct: 262 PASHYVTARPKITSAIGTIQDELEARVAELKAHNLLVEAQRLSQRTSYDIEMLETMGFCS 321

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR PGEPP TL +Y P D L  +DESHV + Q+  MY GD  RK TL E+
Sbjct: 322 GIENYSRHLDGRKPGEPPYTLIDYFPSDMLCIIDESHVALHQLRAMYEGDRSRKVTLVEH 381

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP  +DNRPLRF+E+    P  I VSATPG +EL   +  +VEQ+IRPTGL+DP V 
Sbjct: 382 GFRLPCALDNRPLRFDEFEARIPQFIYVSATPGDYELSVSKQ-VVEQVIRPTGLLDPDVC 440

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +R Q++D+ DEIN    +G R+L+  LTK MA DLTE+  +R  RV YM S+  TL+
Sbjct: 441 VRPSRGQIDDLADEINTRIAKGERVLVCTLTKHMAADLTEHFLDRGFRVSYMTSDTATLD 500

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI+IIRDLR G  DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+  LIQT+GRAAR
Sbjct: 501 RIDIIRDLRQGNIDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSRRDLIQTMGRAAR 560

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           N +  VI+YAD IT+S++ AI ET RRR  QL +N++H+I PQ++K+ + +V
Sbjct: 561 NAHGTVIMYADRITQSMREAITETRRRRALQLAYNEEHHIVPQTIKKSLTDV 612


>gi|315186299|gb|EFU20060.1| Excinuclease ABC subunit B [Spirochaeta thermophila DSM 6578]
          Length = 661

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/657 (52%), Positives = 467/657 (71%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P+GDQ  AIA L +G+    + Q L GVTGSGKTFTMAK++E +Q P +V++
Sbjct: 4   FRVEAPFGPAGDQGKAIALLSEGVKKGYRYQTLKGVTGSGKTFTMAKIVEEVQLPTLVIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYV   D YIEK++SINE+IDR+R 
Sbjct: 64  HNKTLAAQLYREFKEFFPHNAVEYFVSYYDYYQPEAYVASKDLYIEKDASINEEIDRLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ER D IVV++VSCIYG+G+ E + +M V++ +G  ++   L   LV  QY+R 
Sbjct: 124 SATASLMERPDVIVVATVSCIYGLGNPEHFREMRVRIDVGQRLDLGMLKQQLVSLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGTFRV G+ ++I+P++LE V +RV +  +++  I   +PLT + +   +++ +Y
Sbjct: 184 DAVLTRGTFRVRGEIVDIYPAYLEHV-YRVELDWDEVVSIKVVHPLTLEVLDERKSLFVY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V P   + +A++ I+EEL  R  EL  + +L+EAQRL+ R  YDLEMLE  G C 
Sbjct: 243 PAKHFVLPEEQVRSAIQGIREELDERYRELLSQNKLVEAQRLKARTEYDLEMLEEMGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PG+ P  L +Y P+  L+F+DESHVT+PQ+  MY GD  RK +L EY
Sbjct: 303 GIENYSRHLSGRKPGQRPAVLLDYFPDRFLVFIDESHVTLPQLKAMYEGDRSRKLSLVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR+EE+  + P  I VSATP   EL +    +VEQ+IRPTGL+DP VE
Sbjct: 363 GFRLPSALDNRPLRYEEFESIVPQVIYVSATPEEEELSKSSQ-VVEQVIRPTGLLDPEVE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+Y EI    ++G R+L+T LTK+MAEDLT+YL    +RVRY+H+EV+T+E
Sbjct: 422 VRPTEGQIDDLYAEIRKRVEKGQRVLVTTLTKKMAEDLTDYLQSLGLRVRYLHAEVETIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++RDLR G+FDVLVGINLLREGLD+PE  LVAILDADK GFLRS TSLIQ +GRAAR
Sbjct: 482 RVELLRDLRAGEFDVLVGINLLREGLDLPEVALVAILDADKIGFLRSATSLIQIMGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738
           N   KVI+YAD +T +++ AI+ET RRR  Q  +N++H I PQ++++ + ++++  +   
Sbjct: 542 NAEGKVIMYADRVTDAMREAIEETRRRRTIQEAYNREHGITPQTIQKSVRDILERRMKVK 601

Query: 739 EDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+     I +     + L   + K  ++ L K+M   A NL FE AA IRDEI RLK
Sbjct: 602 EEVERKEIEVLVHGYNILVPSERKKLIQRLEKEMLERAKNLEFEMAAVIRDEIARLK 658


>gi|218961133|ref|YP_001740908.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Candidatus Cloacamonas acidaminovorans]
 gi|167729790|emb|CAO80702.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Candidatus Cloacamonas acidaminovorans]
          Length = 667

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/668 (51%), Positives = 450/668 (67%), Gaps = 17/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY PSGDQP AI  L+KGI   ++ Q+LLGVTGSGKTFT+A VI    RP +V++
Sbjct: 4   FKLISDYTPSGDQPEAIEALIKGIEEGKRHQVLLGVTGSGKTFTIANVIAHFNRPTLVLS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K  FP NAVEYF+SYYDYYQPEAY+P  D YIEK+SSINEQI+++R 
Sbjct: 64  HNKTLAAQLYGELKQLFPENAVEYFISYYDYYQPEAYIPGKDIYIEKDSSINEQIEKLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT SL+ER D I+VSSVSCIYG+G  E Y + ++ LK G  ++++EL+  L+   Y R 
Sbjct: 124 RATMSLMERRDVIIVSSVSCIYGLGVPEEYREALISLKKGMKMDREELIHQLISAHYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD ++IFP++LE    RV  FG++I  + + +P++ Q +  VE   +Y
Sbjct: 184 DIAFERGAFRVRGDVVDIFPAYLEH-CLRVEFFGDEIYRLEKIHPISCQPLGEVEKYDVY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++     L  A+  I++E+  R+    +  + +EA+RL+QR T+DLEML   G C 
Sbjct: 243 PAIHFLMNEEKLRKALISIEQEMNERVAWFLQNQKYVEAERLKQRTTFDLEMLHELGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+LTG  PGEPP  L +Y PED L+ +DESHVTIPQ+ GM+ GD+ RK  L EY
Sbjct: 303 GIENYTRHLTGVKPGEPPNCLLDYFPEDFLMVIDESHVTIPQVHGMFAGDYTRKKNLVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRFEE+       I VSATP  +EL   +G IVEQ+IRPTGLVDP +E
Sbjct: 363 GFRLPSAFDNRPLRFEEFEKFMHQVIFVSATPADYELSLTKGEIVEQVIRPTGLVDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I   + QV+D+  +I     +  +IL+  LTKRM+EDL+ YL    I+ RYMHS++ ++E
Sbjct: 423 INPIKHQVDDLIAQIKERVAKKQKILVMTLTKRMSEDLSIYLNNAGIKARYMHSDIDSIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRD RLG+FDV+VGINLLREGLD+PE  LVAILDADK GFLRS  SLIQ  GRAAR
Sbjct: 483 RAKIIRDFRLGEFDVIVGINLLREGLDLPEVSLVAILDADKTGFLRSTRSLIQISGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ KVI YAD IT +I+  + ET RRR KQL +N++H I PQ+    I + ID I+   
Sbjct: 543 NVDGKVIFYADEITDAIKQTVAETNRRRAKQLAYNEEHGITPQT----IYKTIDQIMQST 598

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLR------------KQMHLAADNLNFEEAARIRD 788
           A        A+Q +  K   K  ++ L             K+M+ AA NL+FE AA +RD
Sbjct: 599 AIAEGYDKIAKQATFEKPSAKEFMEYLELDNKEKIIELLTKEMNKAAANLDFEHAAELRD 658

Query: 789 EIKRLKSS 796
           ++  L+ +
Sbjct: 659 KLWELQQN 666


>gi|295397819|ref|ZP_06807884.1| excision endonuclease subunit UvrB [Aerococcus viridans ATCC 11563]
 gi|294973954|gb|EFG49716.1| excision endonuclease subunit UvrB [Aerococcus viridans ATCC 11563]
          Length = 664

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/659 (53%), Positives = 466/659 (70%), Gaps = 2/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I  F + ++Y PSGDQP AI ++++ + + +K Q+LLG TG+GKTFTMA VI    RP +
Sbjct: 3   INQFDLVSEYEPSGDQPEAIRRIVEQVEAGDKAQVLLGGTGTGKTFTMANVIAQTNRPTL 62

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +D+YIEK +S+N++ID+
Sbjct: 63  VLAHNKTLAGQLYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDSYIEKSASVNDEIDK 122

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT S+LER D IVV+SVSCIYG+ +   Y   ++ ++ G  + +   +  LV+ QY
Sbjct: 123 LRHSATSSILERRDTIVVASVSCIYGLVNPAEYRDHVISIRQGQELSRDAFMRRLVENQY 182

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD +++F S  +  + RV  FG++I+ I E   LTG+    VE  
Sbjct: 183 ERNDIDFQRGTFRVRGDIVDVFLSSHDSSSIRVEFFGDEIDRIREVDALTGEVQSEVEHF 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +H+V     +  ++K I+ EL+ RL EL  EG+LLEAQRLEQR  YD+EML   G
Sbjct: 243 PIYPATHFVVDHEQVEKSVKSIEAELEERLKELNDEGKLLEAQRLEQRTRYDIEMLLEMG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR++ GR PGE P TL ++ PED LL VDESH+T+PQ+ GMY GD  RK  L
Sbjct: 303 YCNGIENYSRHMDGRQPGEAPYTLLDFFPEDFLLMVDESHMTMPQVRGMYNGDKARKQVL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVD 556
            ++GFRLPS +DNRPL+ EE+      T+ VSATP  +E+E+  +  IVEQIIRPTGL+D
Sbjct: 363 IDHGFRLPSALDNRPLKLEEFEEKLNQTLYVSATPADYEVEKAGEDDIVEQIIRPTGLLD 422

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P VE+R    Q++D+  EIN   ++  R+ +T LTKRMAEDLT+YL E  I+V+Y+HS++
Sbjct: 423 PTVEVRPIEGQIDDIISEINDRIEREERVFITTLTKRMAEDLTDYLEEVGIKVKYLHSDI 482

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LV ILDADKEGFLR++ SLIQTIG
Sbjct: 483 KTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVTILDADKEGFLRNERSLIQTIG 542

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  VI+YAD IT S++ A+DET RRR  Q  +NK+H I PQ++K++I + I   
Sbjct: 543 RAARNQNGHVIMYADGITDSMRRAMDETARRRAIQQAYNKEHGIVPQTIKKEIRDAIRIT 602

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +     +N S+  Q  +L +   +  L+++  +M  AA +LNFE+AA +RD I  LK+
Sbjct: 603 HVNSEEMSN-SLTEQLRALKRDDREQALRNVELEMKQAAKDLNFEKAAELRDIIMELKA 660


>gi|283783088|ref|YP_003373842.1| excinuclease ABC, B subunit [Gardnerella vaginalis 409-05]
 gi|283441612|gb|ADB14078.1| excinuclease ABC, B subunit [Gardnerella vaginalis 409-05]
          Length = 704

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/686 (50%), Positives = 474/686 (69%), Gaps = 36/686 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++  Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 12  FVVKAPYKPSGDQPQAIDELANRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 72  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R DC+VV++VSCIYG+G+ E Y++ ++ L +G+ +E+ +LL   V  QYKR 
Sbjct: 132 AATANLLTRRDCVVVATVSCIYGLGTPEEYAERMLMLSVGEQLERDDLLRQFVSMQYKRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ I+  +PLTG+ IR   ++ I+
Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRITMLHPLTGEVIRQESSVHIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+     +  A++ I++E   R+ +L+K+ +LLEAQRLE R TYDLEML   G C 
Sbjct: 251 PASHYIAGPERMERALEAIEKERDERVAQLKKQNKLLEAQRLEMRTTYDLEMLRQVGVCP 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR+ G PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 311 GVENYSRHFDGRDAGTPPHTLLDFFPDDFLLVLDESHVTVPQIGAMYEGDASRKRTLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+++E+      T+ +SATPG +EL    G +VEQIIRPTGL+DP +E
Sbjct: 371 GFRLPSAMDNRPLKWKEFLEHVGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLLDPKIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI     +  R+L+T LTK+MAEDLT+Y  E  I+V Y+HS+V TL 
Sbjct: 430 VRPVEGQVDDLLAEIKERVAKDERVLVTTLTKKMAEDLTDYFLELGIKVEYLHSDVDTLR 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  V++YADT+T ++  AI ET RRREKQ+ +NK H I+P+ +++KI +V D +  ED
Sbjct: 550 NVSGTVLMYADTVTDAMSKAISETERRREKQIAYNKAHGIDPKPLRKKISDVNDMLAKED 609

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------------------------------LKSLR 768
             T  +   A     + K G +H                                +K+L 
Sbjct: 610 VDTQTLL--AGGYRNANKAGNSHYGVPKEPNLGQQSKEKRMANVSELPQDDIMSLIKNLS 667

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLK 794
           +QMH+AA+ L FE AAR+RDEI+ LK
Sbjct: 668 EQMHVAAEQLQFELAARLRDEIRDLK 693


>gi|297243676|ref|ZP_06927607.1| helicase subunit of the DNA excision repair complex [Gardnerella
           vaginalis AMD]
 gi|296888427|gb|EFH27168.1| helicase subunit of the DNA excision repair complex [Gardnerella
           vaginalis AMD]
          Length = 704

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/686 (50%), Positives = 474/686 (69%), Gaps = 36/686 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++  Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 12  FVVKAPYAPSGDQPQAIEELANRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 72  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R DC+VV++VSCIYG+G+ E Y++ ++ L +G+ +E+ +LL   V  QYKR 
Sbjct: 132 AATANLLTRRDCVVVATVSCIYGLGTPEEYAERMLMLSVGEQLERDDLLRQFVSMQYKRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ I+  +PLTG+ IR   ++ I+
Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRITMLHPLTGEVIRQESSVHIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+     +  A++ I++E   R+ +L+K+ +LLEAQRLE R TYDLEML   G C 
Sbjct: 251 PASHYIAGPERMERALEAIEKERDERVAQLKKQNKLLEAQRLEMRTTYDLEMLRQVGVCP 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR+ G PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 311 GVENYSRHFDGRDAGTPPHTLLDFFPDDFLLVLDESHVTVPQIGAMYEGDASRKRTLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+++E+      T+ +SATPG +EL    G +VEQIIRPTGL+DP +E
Sbjct: 371 GFRLPSAMDNRPLKWKEFLEHVGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLLDPKIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI     +  R+L+T LTK+MAEDLT+Y  E  I+V Y+HS+V TL 
Sbjct: 430 VRPVEGQVDDLLAEIKERVAKDERVLVTTLTKKMAEDLTDYFLELGIKVEYLHSDVDTLR 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  V++YADT+T ++  AI ET RRREKQ+ +NK H I+P+ +++KI +V D +  ED
Sbjct: 550 NVSGTVLMYADTVTDAMSKAISETERRREKQIAYNKAHGIDPKPLRKKISDVNDMLAKED 609

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------------------------------LKSLR 768
             T  +   A     + K G +H                                +K+L 
Sbjct: 610 VDTQTLL--AGGYRNANKAGNSHYGVPKEPNLGQQSKEKRMANISELPQDDIMSLIKNLS 667

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLK 794
           +QMH+AA+ L FE AAR+RDEI+ LK
Sbjct: 668 EQMHVAAEQLQFELAARLRDEIRDLK 693


>gi|284929353|ref|YP_003421875.1| Excinuclease ABC subunit B [cyanobacterium UCYN-A]
 gi|284809797|gb|ADB95494.1| Excinuclease ABC subunit B [cyanobacterium UCYN-A]
          Length = 664

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/663 (50%), Positives = 466/663 (70%), Gaps = 14/663 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ++  + P+GDQP AI +L+  +    K Q LLG TG+GKTF++A VI+ +++P +++
Sbjct: 1   MFQLKAPFKPTGDQPRAIEELILSLKEGNKFQTLLGATGTGKTFSIASVIDKIKKPTLIL 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQL +E +NFFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID +R
Sbjct: 61  AHNKTLAAQLCNELRNFFPNNAVEYFISYYDYYQPEAYIPLSDTYIEKSASINDEIDMLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSATRSL ER D I+++S+SCIYG+G    Y +  + L++G  + Q++LL  LV  QY R
Sbjct: 121 HSATRSLFERQDVIIIASISCIYGLGMPSEYLKASIPLEVGREINQRQLLRDLVNVQYSR 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ + RG FRV GD +EI P++ ED   R+  FG++++ I   +P++G  + +++ I I
Sbjct: 181 NDMELKRGRFRVKGDILEIVPAY-EDRVIRIEFFGDEVDSIRYLHPVSGDILEDLKKINI 239

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y   H+VT +  L+ + K I EEL+ +++  E+ G+LLE+QR+ QR  YDLE+L   G C
Sbjct: 240 YPARHFVTRKDRLDASCKAIAEELEQQIVNFEQAGKLLESQRISQRTRYDLELLREVGYC 299

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +ENYSR+L GR  GE P  L +Y+P+D LL VDESHVTIPQI GMY GD  RK  L +
Sbjct: 300 NGVENYSRHLAGRESGESPECLIDYLPKDWLLVVDESHVTIPQIRGMYNGDQARKKVLID 359

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS  DNRPL+ +E+       I VSATPG WELE+ +  +++Q+IRPTG++DP +
Sbjct: 360 HGFRLPSAADNRPLKSDEFWSKVNQCIFVSATPGEWELEKSEDKVIQQVIRPTGILDPKI 419

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R  + QV+D+  EI    Q+  RIL+T LTKRMAEDLTEY  ER ++VRY+HSE+K++
Sbjct: 420 SVRPTKNQVDDLLGEIKDRVQRQERILVTTLTKRMAEDLTEYFQEREVKVRYLHSEIKSI 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEI++DLR G+FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR + SLIQ IGRAA
Sbjct: 480 ERIEILQDLRNGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRGEKSLIQIIGRAA 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           R++N + ILY D +T S+  AI+ET RRR  Q  +N K+NI P+S+   I E  + IL  
Sbjct: 540 RHINGQAILYGDKLTDSMIKAIEETERRRHIQSSYNDKNNIIPKSI---ISERNNSIL-- 594

Query: 740 DAATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           +    + S+D ++L         +S  K    +K L  +M  +A+ L+FE AA+ RD+IK
Sbjct: 595 NYLDISRSLDTEKLEEICDHIEEISLDKIPELIKQLESKMEKSANQLDFELAAKYRDQIK 654

Query: 792 RLK 794
             +
Sbjct: 655 HFR 657


>gi|195953210|ref|YP_002121500.1| excinuclease ABC subunit B [Hydrogenobaculum sp. Y04AAS1]
 gi|195932822|gb|ACG57522.1| excinuclease ABC, B subunit [Hydrogenobaculum sp. Y04AAS1]
          Length = 661

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/658 (51%), Positives = 455/658 (69%), Gaps = 4/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++FFQ++    P+GDQP AI +LL    +  K Q+LLG TG+GKTFT+A +I   ++P +
Sbjct: 1   MSFFQLKKHLKPAGDQPKAIDKLLSNFEAGAKAQVLLGATGTGKTFTIANIIAKYKKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLY EFK  FP+NAVEYF+SYYDYYQPEAY+P  D YIEK+SSIN+ +D+
Sbjct: 61  VLAHNKTLAAQLYREFKELFPNNAVEYFISYYDYYQPEAYIPEKDLYIEKDSSINDILDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            RHSAT+S++ER D IVV+SVSCIYG+GS E Y  M +QL  G  ++  +L   LV+  Y
Sbjct: 121 YRHSATKSVIERADTIVVASVSCIYGLGSPEHYVNMRIQLLKGQKLDPLKLSRQLVEIGY 180

Query: 318 KRQDIGIIRGTFRV-CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R D    RGTF V  GDSIEI PSH +D+  R+  + N+I+ I E   L    IR ++ 
Sbjct: 181 ERNDFSFKRGTFSVRGGDSIEIVPSHADDIVIRIEFWDNEIDSIKELDLLNRHVIREIDY 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++  +HYV P+P L  A++ I+++LK R+   + +G+ +EAQRL QR  YD+EM++  
Sbjct: 241 TVLFPATHYVAPKPALMEAIEKIEKDLKARVEYFKSQGKEIEAQRLWQRTMYDIEMIKEI 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSRY  GR  GEPP TL +Y+PED LL VDESHVTIPQ+ GMY GD  RK  
Sbjct: 301 GHCKGIENYSRYFDGRKEGEPPFTLLDYMPEDFLLIVDESHVTIPQVRGMYNGDISRKQK 360

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YG+RLP+ +DNRPL+F+E+       I VSATPG WE+E  +G+IVEQI+RPTGL+D
Sbjct: 361 LVDYGWRLPAALDNRPLKFDEFLRKINKVIFVSATPGDWEIEFSKGVIVEQIVRPTGLLD 420

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R    Q+ED+  EI     +  R ++   TKR++ED+  YL ER I+ RY+HS++
Sbjct: 421 PEIEVRPTTNQLEDLIKEILKVKARNERAIVLTTTKRLSEDVANYLIERRIKARYLHSDL 480

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
             +ER + I++LR G  DV+VG+NLLREG+D+PE  LVAIL+ADKEGFLRS TSLIQTIG
Sbjct: 481 DAIERAKAIKELREGSIDVIVGVNLLREGIDMPEVSLVAILEADKEGFLRSTTSLIQTIG 540

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           R ARN+N K +LYAD IT+S++ AIDET RRRE Q  +N++H I P+S+ + + E++   
Sbjct: 541 RVARNINGKAMLYADRITESMKKAIDETNRRREIQKRYNEEHGIIPKSIVKPVKELLS-- 598

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +ED     +     +   ++K     L  L K M  A+    FE+AA+IRDEI  LK
Sbjct: 599 -IEDLDYVKVPDSIPKDIKTEKDLVERLNKLEKMMWEASKKWEFEKAAKIRDEINELK 655


>gi|163786024|ref|ZP_02180472.1| excinuclease ABC subunit B [Flavobacteriales bacterium ALC-1]
 gi|159877884|gb|EDP71940.1| excinuclease ABC subunit B [Flavobacteriales bacterium ALC-1]
          Length = 668

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/663 (51%), Positives = 464/663 (69%), Gaps = 13/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++++ P+GDQP AI QL  GI S+EK Q LLGVTGSGKTFT+A VIE +QRP +V+A
Sbjct: 3   FKIESEFKPTGDQPEAIKQLAGGIKSKEKYQTLLGVTGSGKTFTVANVIEEVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P +  YIEK+ SINE+I++MR 
Sbjct: 63  HNKTLAAQLYSEFKQFFPDNAVEYFVSYYDYYQPEAYIPVSGVYIEKDLSINEEIEKMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IVV+SVSC+YGIG+   + + ++ ++    + + +LL  LV+  Y R
Sbjct: 123 STTSSLLSGRRDVIVVASVSCLYGIGNPVEFQKNVISIERDQVISRTKLLHQLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +     G FR+ GD++++FP +  D A+R+  FG++IEEI  F   T + I   + + I
Sbjct: 183 TEAEFKNGNFRIKGDTVDVFPGY-SDNAFRIHFFGDEIEEIEAFDARTNEIIERYDRLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    LN A+K I+++L  +    ++ G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLNGAIKDIQDDLVKQHDYFKEIGKHLEAKRLKERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ VDESHVTI Q+  MY GD  RK  L +
Sbjct: 302 SGIENYSRYLDGRAPGTRPFCLLDYFPDDFLMVVDESHVTISQVHAMYGGDRSRKVNLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +E+++  G+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYEMQKTDGVYVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++++ +EI    ++  R L+T LTKRMAE+L +YL   +IR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDNLIEEIQDRVEKDERTLVTTLTKRMAEELVKYLTRISIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSTRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N K I+YAD ITKS+Q  IDET  RREKQ+ +N KHNI P+++ +     +D  L +
Sbjct: 542 RNLNGKAIMYADKITKSMQKTIDETEYRREKQIAYNTKHNIKPKALNKS----LDSALAK 597

Query: 740 DAATT-------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           ++ +T        I+ + +   L+K + +  ++  RKQM LAA  L+F EAA  RDEI  
Sbjct: 598 NSVSTYRTELDAKIAAEPESEYLTKSQLEKKIREKRKQMELAAKALDFMEAAHFRDEIMA 657

Query: 793 LKS 795
            +S
Sbjct: 658 YQS 660


>gi|308235368|ref|ZP_07666105.1| excinuclease ABC subunit B [Gardnerella vaginalis ATCC 14018]
 gi|311114861|ref|YP_003986082.1| excision endonuclease subunit UvrB [Gardnerella vaginalis ATCC
           14019]
 gi|310946355|gb|ADP39059.1| excision endonuclease subunit UvrB [Gardnerella vaginalis ATCC
           14019]
          Length = 704

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/686 (50%), Positives = 475/686 (69%), Gaps = 36/686 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++  Y+PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 12  FVVKAPYNPSGDQPQAIEELANRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 72  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R DC+VV++VSCIYG+G+ E Y++ ++ L +G+ +E+ +LL   V  QYKR 
Sbjct: 132 AATANLLTRRDCVVVATVSCIYGLGTPEEYAERMLMLSVGEQLERDDLLRQFVNMQYKRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ I+  +PLTG+ IR   ++ I+
Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRITMLHPLTGEVIRQESSVHIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+     +  A++ I++E   R+ +L+K+ +LLEAQRLE R TYDLEML   G C 
Sbjct: 251 PASHYIAGPERMERALEAIEKERDERVAQLKKQNKLLEAQRLEMRTTYDLEMLRQVGVCP 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR  G PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 311 GVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVLDESHVTVPQIGAMYEGDASRKRTLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+++E+      T+ +SATPG +EL    G +VEQIIRPTGL+DP +E
Sbjct: 371 GFRLPSAMDNRPLKWKEFLEHVGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLLDPKIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI     +  R+L+T LTK+MAEDLT+Y  E  I+V Y+HS+V TL 
Sbjct: 430 VRPVEGQVDDLLAEIKARVAKDERVLVTTLTKKMAEDLTDYFLELGIKVEYLHSDVDTLR 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  V++YAD++T ++  AI ET RRREKQ+ +NK H I+P+ +++KI +V D +  ED
Sbjct: 550 NVSGTVLMYADSVTDAMSKAISETERRREKQIAYNKAHGIDPKPLRKKISDVNDMLAKED 609

Query: 741 AATTNISIDAQQLSLSKKKGKAH--------------------------------LKSLR 768
             T  + +   +   + K G +H                                +K+L 
Sbjct: 610 VDTQTLLVGGYR--NANKAGNSHYGVPKEPNLGQQSKEKRMANISELPQDDIMSLIKNLS 667

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLK 794
           +QMH+AA+ L FE AAR+RDEI+ LK
Sbjct: 668 EQMHVAAEQLQFELAARLRDEIRDLK 693


>gi|224541969|ref|ZP_03682508.1| hypothetical protein CATMIT_01142 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525109|gb|EEF94214.1| hypothetical protein CATMIT_01142 [Catenibacterium mitsuokai DSM
           15897]
          Length = 656

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/656 (53%), Positives = 458/656 (69%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + + P GDQP AI +L+KGIH  +K Q+LLG TG+GKTFT A VI  + +P +V++
Sbjct: 3   YKLVSKFKPMGDQPEAIKELVKGIHEGKKTQVLLGGTGTGKTFTFANVIAQVNKPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFP N VEYF+S +D+YQPEAY+P++DTYI+KES  NE+I+ +R 
Sbjct: 63  HNKTLAGQLYSELKEFFPENRVEYFISNFDFYQPEAYIPKSDTYIDKESQTNEEIEMLRA 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +A  SLLER D IVV+SV+ IYG+G+ +SY +MI  L++G  ++++ELL+ LV +QY R 
Sbjct: 123 AAMNSLLERKDTIVVASVAAIYGLGNPQSYQEMIFSLRVGQEIDRRELLTFLVDRQYTRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  ++GTFRV GD IEI P H E    R+ +FG++++ I+E  PLTG    +  T  IY
Sbjct: 183 DMDQVKGTFRVRGDVIEIVPGHTESYIIRIELFGDEVDRITEVDPLTGHVQASYNTYTIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               Y+T R  +  A   I+EELK RL   +   + LE +R++ R  +D+EML   G C 
Sbjct: 243 PAEEYITSREKMLHACDTIEEELKDRLQYYQDVAKPLEYERIDNRTRHDIEMLREVGICP 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P  L +Y P+D LL VDESHV +PQI GM+ GD  RK TL EY
Sbjct: 303 GIENYSRHIDGRKPGERPYCLIDYFPDDFLLIVDESHVMLPQIRGMFNGDRSRKETLVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P  I VSATPG +ELE   G  VEQIIRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLRFEEFEKLIPQAIFVSATPGDYELEGVHGEYVEQIIRPTGLLDPIIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI L  ++  R+L+T LTKRMAEDLT+YL E  ++V Y+HSE KTLE
Sbjct: 423 VRPIEDQIDDIISEIQLRIERNERVLITTLTKRMAEDLTDYLKEFGLKVAYLHSETKTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RDLRLGK+DVL+GINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RTEILRDLRLGKYDVLIGINLLREGLDLPEVSLVCILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD IT S+Q AIDET+RRRE Q  +NK H I P ++K++I E I    + D
Sbjct: 543 NADGHVIMYADRITDSMQHAIDETSRRREIQEAYNKAHGITPTTIKKEIREAIHGQEVID 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A   +    +     KK  K  L+ L +QM  AA  L+FE A  +RD I+ +K  
Sbjct: 603 EAQKLVK---KGRKAPKKDKKVLLEELERQMKEAAKVLDFERAMELRDMIEEIKDG 655


>gi|15606895|ref|NP_214276.1| excinuclease ABC subunit B [Aquifex aeolicus VF5]
 gi|8134784|sp|O67708|UVRB_AQUAE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|2984128|gb|AAC07664.1| repair excision nuclease subunit B [Aquifex aeolicus VF5]
          Length = 663

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/650 (52%), Positives = 451/650 (69%), Gaps = 4/650 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++T+  P+GDQP AI +LL+ +    K Q LLGVTGSGKTFT+A VI    +P +V+ 
Sbjct: 8   FKLKTNLKPAGDQPKAIKKLLENLRKGVKEQTLLGVTGSGKTFTLANVIAKYNKPTLVVV 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NKILAAQLY EFK  FP NAVEYFVSYYDYYQPEAY+P  D YIEK++SINE ++R RH
Sbjct: 68  HNKILAAQLYREFKELFPENAVEYFVSYYDYYQPEAYIPEKDLYIEKDASINETLERFRH 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT S+LER D IVV+SVSCIYG+G  E Y  + ++L+ G  +   +LL  LV+  Y+R 
Sbjct: 128 SATISVLERRDVIVVASVSCIYGLGKPEHYENLRIKLQRGIRLNLSKLLRKLVELGYQRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I R TF V GD +EI PSH ED   RV  + +++E I     L    I+ VE   ++
Sbjct: 188 DFAIKRATFSVRGDVVEIVPSHTEDYLVRVEFWDDEVERIVLMDALNRHVIKEVEEYSVF 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+ PRPT+  A+K I+++L  R+   + +GR +EAQRL QR  YD+EM+   G C+
Sbjct: 248 PASHYIAPRPTVEQALKEIEKDLIERVKWFKSQGREVEAQRLYQRTMYDIEMIRELGHCK 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY  GR PGEPP TL +Y PED LL +DESH+TIPQ+  MY GD  RK  L EY
Sbjct: 308 GIENYSRYFDGRKPGEPPFTLLDYFPEDFLLIIDESHMTIPQLRAMYNGDRSRKEKLVEY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           G+RLPS +DNRPL+FEE+       I VSATPG WELE+ +  +VEQI+RPTGL+DP VE
Sbjct: 368 GWRLPSALDNRPLKFEEFLERINQVIYVSATPGDWELERSEA-VVEQIVRPTGLLDPVVE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q+E++  EI    ++  R L+   TKR+AE++ +YL ER IR +YMHSE+  +E
Sbjct: 427 VRPKMNQLENLVKEIKEVKKRKERALVLTTTKRLAEEIADYLTERKIRAKYMHSELDAIE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R ++IR+LR G  DV+VG+NLLREGLD+PE  LVAI+DADKEGFLRS  +LIQTIGRAAR
Sbjct: 487 RAQLIRELREGSIDVIVGVNLLREGLDLPEVSLVAIMDADKEGFLRSYQALIQTIGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ K ILYAD ITK+++ AI ET RRR+ Q E NKKH I P+S+K+ + E+   + +E+
Sbjct: 547 NIHGKAILYADRITKAMEKAIQETQRRRKIQEEFNKKHGITPKSIKKPVKEL---LAIEE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
               ++  +  +   S++     ++ L K+M   A N  FE+AA++RDEI
Sbjct: 604 LDYVSVPEELPKGVKSEEDILKKIEKLEKEMWKYAQNWEFEKAAKVRDEI 653


>gi|78183661|ref|YP_376095.1| excinuclease ABC subunit B [Synechococcus sp. CC9902]
 gi|78167955|gb|ABB25052.1| Excinuclease ABC subunit B [Synechococcus sp. CC9902]
          Length = 679

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/671 (51%), Positives = 453/671 (67%), Gaps = 19/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   Y P GDQP AI QL+ G++  E+ Q LLG TG+GKTFTMA VI    RPA+V+A
Sbjct: 4   FDLTAPYSPKGDQPTAITQLVDGVNGGERYQTLLGATGTGKTFTMANVIAQTGRPALVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 64  HNKTLAAQLCNELREFFPENAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G ++  +  L  LV  QY R 
Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGATLNIRGQLRELVNNQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I RG FR+ GD +EI P++ +D   R+ +FG+++E I    P TG+ ++++E I IY
Sbjct: 184 DTEIARGRFRMKGDVLEIGPAY-DDRLVRIELFGDEVEAIRYVDPTTGEILQSLEDINIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L+ A+K I+ EL+ RL  L  EG+LLEAQRLEQR  YDLEML+  G C 
Sbjct: 243 PAKHFVTPKDRLDDAIKAIRMELRDRLEFLNGEGKLLEAQRLEQRTKYDLEMLDQVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L ++
Sbjct: 303 GVENYARHLAGREAGTPPECLIDYFPDDWLLIVDESHVTCSQLQAMYNGDQARKKVLVDH 362

Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           GFRLPS  DNRPL+  E W   R  T+ VSATPG+WELE   G + +Q+IRPTG++DP +
Sbjct: 363 GFRLPSAADNRPLKGSEFWEKAR-QTVFVSATPGNWELEVSTGQVAQQVIRPTGVLDPLI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    QV+D+  EI   A +  R+L+T LTKRMAEDLT+YL E   RVRY+HSE+ ++
Sbjct: 422 EVRPTTGQVDDLLGEIRDRAAKNQRVLVTTLTKRMAEDLTDYLAENGTRVRYLHSEIHSI 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAA
Sbjct: 482 ERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           R+V  K +LYA+ +T S+  AID T +RR+ Q  +N++H I P +  +K    I   L  
Sbjct: 542 RHVEGKALLYAENMTDSMLKAIDVTEKRRKIQHTYNEEHGIVPTAAGKKASNSILSFLEL 601

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKS----------------LRKQMHLAADNLNFEEA 783
                    DA  + ++ K  +A  K                 L  +M  AA  L+FEEA
Sbjct: 602 SRKLKQDGPDADLVEVAGKAVRALEKDADAGLALEALPELIDQLESKMKDAAKKLDFEEA 661

Query: 784 ARIRDEIKRLK 794
           A +RD +K+L+
Sbjct: 662 ANLRDRVKQLR 672


>gi|171915971|ref|ZP_02931441.1| excinuclease ABC subunit B [Verrucomicrobium spinosum DSM 4136]
          Length = 745

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/720 (48%), Positives = 467/720 (64%), Gaps = 65/720 (9%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P GDQ  AIA+L+K + +  + Q LLGVTGSGKTFTMA +I  + +PA++M+
Sbjct: 10  FQLNSHYSPEGDQGQAIAKLVKSVRAGNRHQTLLGVTGSGKTFTMANIIAQIGKPALIMS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFKNFFPHNAVEYFVSY+DYYQPEAY+ R+DTYIEK+SSINE+I+RMR 
Sbjct: 70  HNKTLAAQLYSEFKNFFPHNAVEYFVSYFDYYQPEAYIARSDTYIEKDSSINEEIERMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S   +LL R D IVV+SVSCIYG+GS E Y  M++ LK+GD + ++  L+ LV   Y+R 
Sbjct: 130 STMGALLTRKDVIVVASVSCIYGLGSPEDYEGMMLPLKVGDVITRESFLTRLVDMLYERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FR  GD IE+FP++LED A RV  FG++I+ +S F PLTG     +     Y
Sbjct: 190 DIAFGRGKFRARGDVIEVFPAYLEDEAIRVEFFGDEIDRMSVFNPLTGTATGQLPGYTFY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               +VTP   L  A+K I+EEL  R+ E E++G+LLEAQRL  R  YD+EM++  G CQ
Sbjct: 250 PAKQFVTPADKLRRAIKAIREELDARIAEFEQQGKLLEAQRLRMRTEYDIEMMQEMGFCQ 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL  +  +D +LF+DESHVT+PQI GMY GD  RK  L E+
Sbjct: 310 GIENYSRHLASREPGSTPGTLLSFFRDDFMLFLDESHVTVPQIGGMYEGDRSRKTVLVEH 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE---------------------- 538
           GFRLPS MDNRPL+F E+       + VSATP ++E+E                      
Sbjct: 370 GFRLPSAMDNRPLKFPEFMKKMHQIVYVSATPATFEVENSIVGNTGYIPHKRERIGEEEG 429

Query: 539 ------------------------------QCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
                                         + + +IVEQIIRPTGL+DP V +R  + Q+
Sbjct: 430 VPAMVPGSRSKPIVRISGSAEPLEKFDVTTKGRHLIVEQIIRPTGLLDPIVTMRPLKGQI 489

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           ++  +      ++  R+L+T LTKR AEDLT+YL   +++VRY+HSE+  +ER+EI+R L
Sbjct: 490 DETIELCRQRIEKNERVLVTTLTKRTAEDLTDYLRNLDLKVRYLHSEIDAIERVEILRAL 549

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G+FD+LVGINLLREGLD+PE  LV ILDADKEGFLRS+TSL+QT GRAAR+VN +V+L
Sbjct: 550 RAGEFDILVGINLLREGLDLPEVSLVCILDADKEGFLRSETSLLQTAGRAARHVNGEVVL 609

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           +AD IT+SIQ  I+ +  RRE+Q +HN+KH I PQ+V+  + E +        A  N+  
Sbjct: 610 FADQITQSIQALINISAYRRERQEDHNEKHGITPQTVQRAVQESLHTY----QAGRNVE- 664

Query: 749 DAQQLSLSKKKGKA---HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             + +   +  G A    ++ L  +M  AA  L +E AA +RD+I+ LK      G++D+
Sbjct: 665 --ESMVRDEAGGYAVTEVIRELESEMAEAAVKLEYERAALLRDQIRELKKQA---GIEDT 719


>gi|283455816|ref|YP_003360380.1| excinuclease ABC subunit B [Bifidobacterium dentium Bd1]
 gi|283102450|gb|ADB09556.1| Excinuclease ABC subunit B [Bifidobacterium dentium Bd1]
          Length = 706

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/683 (51%), Positives = 469/683 (68%), Gaps = 31/683 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 15  FVVKSPYRPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 74

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 75  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 134

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK G  +++ ELL   V  QYKR 
Sbjct: 135 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKEGQQIDRDELLRMFVSMQYKRN 194

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I +   + I+
Sbjct: 195 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDHISTLHPLTGDVIDHEPQVHIF 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  IKEEL  R+ EL K+G+ LEAQRL  R TYDLEML   G C 
Sbjct: 254 PASHYVAGPERMERALATIKEELDQRVAELRKQGKELEAQRLTMRTTYDLEMLTQVGVCS 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 314 GVENYSRHFDGREPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G+ VEQIIRPTGLVDP ++
Sbjct: 374 GFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLVDPKID 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL 
Sbjct: 433 VRPVEGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 493 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD +T+++  AIDET RRR+ Q+ +NK+H I+P+ + +KI +V D +  ED
Sbjct: 553 NVSGTVIMYADDVTEAMHKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDVNDMLAKED 612

Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771
                           A  +++ +     S S K+ +  LK+             L  QM
Sbjct: 613 VDTQTLLGTGYRNADKAGNSHLGVPTFDRSESDKRHEEILKAGLPAQDLADLIRQLSDQM 672

Query: 772 HLAADNLNFEEAARIRDEIKRLK 794
           H AA+ L FE AAR+RDEI+ LK
Sbjct: 673 HTAAEQLQFELAARLRDEIRDLK 695


>gi|237785414|ref|YP_002906119.1| excinuclease ABC subunit B [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758326|gb|ACR17576.1| excinuclease ABC, subunit B [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 736

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/691 (49%), Positives = 476/691 (68%), Gaps = 38/691 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI ++ + +   E+  +L+G TG+GK+ T A +IE  QRP +VMA
Sbjct: 35  FEVVSDYEPAGDQPQAIKEIDERLRRGERDVVLMGATGTGKSATAAWLIEKQQRPTLVMA 94

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE ++R+RH
Sbjct: 95  PNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEDVERLRH 154

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VVSSVSCIYG+G+ +SY    + L++G+ V++ + L  LV  QY R 
Sbjct: 155 SATSNLLSRRDVVVVSSVSCIYGLGTPQSYLDRSIPLRVGEEVDRDQFLRLLVDVQYTRN 214

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD ++I P++ E+V  RV  FG++I+ +   +PLTG+ I   + ++I+
Sbjct: 215 DVAFTRGTFRVKGDVVDIIPAY-EEVGVRVEFFGDEIDSLHTIHPLTGEVIDTHDQLRIF 273

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A + IK ELK RL +LE  G+L+EAQRL  R  +DLEM+E  G C 
Sbjct: 274 PATHYVAGPERMAKAEEAIKAELKDRLADLENRGKLVEAQRLRMRTEFDLEMIEQVGFCS 333

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 334 GIENYSRHIDGREAGSAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDASRKRNLIDF 393

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL ++E++  +   + +SATPG +ELE   G  VEQ+IRPTGLVDP + 
Sbjct: 394 GFRLPSAIDNRPLTWDEFDARKGQCVYMSATPGDYELEAAGGEYVEQVIRPTGLVDPKIV 453

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ +EI     +  R+L+T LTK+MAEDLT+YL +  IRVRY+HS++ TL+
Sbjct: 454 VKPTKGQIDDLMEEIRQRTDKNERVLVTTLTKKMAEDLTDYLADAGIRVRYLHSDIDTLQ 513

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++RDLRLGK+DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 514 RVELLRDLRLGKYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQTIGRAAR 573

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YADT+T S+  AIDET RRREKQ+  NK+HNI+PQ +++KI +++D +   +
Sbjct: 574 NVSGEVHMYADTVTDSMAQAIDETERRREKQIAFNKEHNIDPQPLRKKIADILDQVYDNE 633

Query: 741 A-----------------------------ATTNISIDA----QQLSLSKKKGKAHLKSL 767
           +                             +T++++ DA     Q     +  +  L  L
Sbjct: 634 SEADEHGPGGTTTAGGGAQTSANGNGQKVQSTSSLTSDAALAGDQEPDYTEMTRDDLVRL 693

Query: 768 R----KQMHLAADNLNFEEAARIRDEIKRLK 794
           R    +QM  AA +L FE AAR+RDE+  +K
Sbjct: 694 RDDLTRQMGDAARDLKFELAARLRDELVGVK 724


>gi|171743203|ref|ZP_02919010.1| hypothetical protein BIFDEN_02331 [Bifidobacterium dentium ATCC
           27678]
 gi|171278817|gb|EDT46478.1| hypothetical protein BIFDEN_02331 [Bifidobacterium dentium ATCC
           27678]
          Length = 712

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/683 (51%), Positives = 469/683 (68%), Gaps = 31/683 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 21  FVVKSPYRPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 80

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 81  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 140

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK G  +++ ELL   V  QYKR 
Sbjct: 141 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKEGQQIDRDELLRMFVSMQYKRN 200

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I +   + I+
Sbjct: 201 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDHISTLHPLTGDVIDHEPQVHIF 259

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  IKEEL  R+ EL K+G+ LEAQRL  R TYDLEML   G C 
Sbjct: 260 PASHYVAGPERMERALATIKEELDQRVAELRKQGKELEAQRLTMRTTYDLEMLTQVGVCS 319

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 320 GVENYSRHFDGREPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 379

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G+ VEQIIRPTGLVDP ++
Sbjct: 380 GFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLVDPKID 438

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL 
Sbjct: 439 VRPVEGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 498

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 499 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 558

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD +T+++  AIDET RRR+ Q+ +NK+H I+P+ + +KI +V D +  ED
Sbjct: 559 NVSGTVIMYADDVTEAMHKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDVNDMLAKED 618

Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771
                           A  +++ +     S S K+ +  LK+             L  QM
Sbjct: 619 VDTQTLLGTGYRNADKAGNSHLGVPTFDRSESDKRHEEILKAGLPAQDLADLIRQLSDQM 678

Query: 772 HLAADNLNFEEAARIRDEIKRLK 794
           H AA+ L FE AAR+RDEI+ LK
Sbjct: 679 HTAAEQLQFELAARLRDEIRDLK 701


>gi|237736951|ref|ZP_04567432.1| excinuclease ABC subunit B [Fusobacterium mortiferum ATCC 9817]
 gi|229420813|gb|EEO35860.1| excinuclease ABC subunit B [Fusobacterium mortiferum ATCC 9817]
          Length = 667

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/657 (50%), Positives = 471/657 (71%), Gaps = 5/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ + Y P GDQP AI ++++ I+     Q+LLGVTGSGKTFT+A +I+   RPA+++
Sbjct: 8   MFKLHSKYTPMGDQPEAIKKIVENINDGIADQVLLGVTGSGKTFTIANIIKETNRPALIL 67

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLYSE+K+FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SSIN++I+++R
Sbjct: 68  APNKTLAAQLYSEYKSFFPENAVEYFVSYYDYYQPEAYIAVTDTYIEKDSSINDEIEKLR 127

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +AT +L+ R D I+V+SVS IYG+GS E+Y +M + +     + +KEL+  L+  +Y+R
Sbjct: 128 QAATAALINRRDVIIVASVSAIYGLGSAETYKKMTIPIDRQTGIGRKELIQRLISIRYER 187

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIK 378
            D+   RG FR+ GD I+I+PS++E   +R+  +  D+EEISE   LTGQKIR N+E I 
Sbjct: 188 NDLAFERGKFRIKGDVIDIYPSYME-TGYRLEFWDEDLEEISEINTLTGQKIRKNLERIM 246

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  + Y+T    +   +  I+++    +   E +G+LLEAQRL+QR  YD+EM+   G 
Sbjct: 247 IYPATQYLTEDGDIERIIAEIQKDKLEEVKAFEDKGKLLEAQRLKQRTEYDIEMIREIGY 306

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSRYL+G+ PGE P TL EY P+D + ++DESH++IPQI GMY GD  RK +L 
Sbjct: 307 CKGIENYSRYLSGKKPGETPDTLLEYFPKDFVTYIDESHISIPQIRGMYNGDRARKESLV 366

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           + GFRL + +DNRPL+FEE+  +   T+ VSATPG +E+++  G I EQ+IRPTG++DP 
Sbjct: 367 DNGFRLKAALDNRPLKFEEFRKITGQTVFVSATPGDFEIQESNGNIAEQLIRPTGILDPE 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R  + QV+D+ +EI +   +  R+L+T LTK+MAE+LTEY     +RV+YMHS++ T
Sbjct: 427 IEVRPTKNQVDDLMEEIRIRVGKNQRVLVTTLTKKMAEELTEYYLGFGLRVKYMHSDIDT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LERI+II+ LR G+FDVLVGINLLREGLDIPE  LVAIL+ADKEGFLRS+ SL+QTIGRA
Sbjct: 487 LERIDIIKGLRKGEFDVLVGINLLREGLDIPEVSLVAILEADKEGFLRSRRSLVQTIGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV  +VILY D IT S++ AIDET RRR+ Q ++N ++ I+P++V  +I E  D I L
Sbjct: 547 ARNVEGRVILYGDIITDSMKEAIDETNRRRKIQNQYNIENGIDPKTVIREISE--DIINL 604

Query: 739 EDAATTNISIDAQQLSLSKKKG-KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +      +  +  +   S K   +  +  L+K++   +  L+FE+A   RDE+ +LK
Sbjct: 605 DYGLPDEVVKEKDKKVFSSKADIEKEIAKLQKEITKLSKELDFEKAIVKRDEMIKLK 661


>gi|306823048|ref|ZP_07456424.1| excision endonuclease subunit UvrB [Bifidobacterium dentium ATCC
           27679]
 gi|304553680|gb|EFM41591.1| excision endonuclease subunit UvrB [Bifidobacterium dentium ATCC
           27679]
          Length = 712

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/683 (51%), Positives = 469/683 (68%), Gaps = 31/683 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 21  FVVKSPYRPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 80

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 81  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 140

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK G  +++ ELL   V  QYKR 
Sbjct: 141 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKEGQQIDRDELLRMFVSMQYKRN 200

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I +   + I+
Sbjct: 201 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDHISTLHPLTGDVIDHEPQVHIF 259

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  IKEEL  R+ EL K+G+ LEAQRL  R TYDLEML   G C 
Sbjct: 260 PASHYVAGPERMERALATIKEELDQRVAELRKQGKELEAQRLTMRTTYDLEMLTQVGVCS 319

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 320 GVENYSRHFDGREPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 379

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPTGLVDP ++
Sbjct: 380 GFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLVDPKID 438

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL 
Sbjct: 439 VRPVDGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 498

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 499 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 558

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD +T+++  AIDET RRR+ Q+ +NK+H I+P+ + +KI +V D +  ED
Sbjct: 559 NVSGTVIMYADDVTEAMHKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDVNDMLAKED 618

Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771
                           A  +++ +     S S K+ +  LK+             L  QM
Sbjct: 619 VDTQTLLGTGYRNADKAGNSHLGVPTFDRSESDKRHEEILKAGLPAQDLADLIRQLSDQM 678

Query: 772 HLAADNLNFEEAARIRDEIKRLK 794
           H AA+ L FE AAR+RDEI+ LK
Sbjct: 679 HTAAEQLQFELAARLRDEIRDLK 701


>gi|261338683|ref|ZP_05966567.1| excinuclease ABC subunit B [Bifidobacterium gallicum DSM 20093]
 gi|270276309|gb|EFA22163.1| excinuclease ABC subunit B [Bifidobacterium gallicum DSM 20093]
          Length = 703

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/690 (51%), Positives = 470/690 (68%), Gaps = 45/690 (6%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A ++E +QRP +++ 
Sbjct: 12  FVVKSPYQPSGDQPQAIEELATRIENGENDVVLMGATGTGKTATTAWLVERLQRPTLIIE 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 72  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK+G  +E+ +LL + V  QYKR 
Sbjct: 132 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLLLKVGQQIERDQLLRTFVDMQYKRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ I+  +PLTG  I   E++ I+
Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRITMLHPLTGDVIGEQESVHIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I++EL  R+ +L ++G+ LEAQRL  R TYDLEML   G C 
Sbjct: 251 PASHYVAGPERMQRALTSIQQELDERVAQLHQQGKELEAQRLSMRTTYDLEMLSQVGVCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 311 GVENYSRHFDGRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPTGLVDP ++
Sbjct: 371 GFRLPSAMDNRPLKWPEFLDRVGQTVYLSATPGEYELGLSDG-VVEQIIRPTGLVDPRID 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +G R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL 
Sbjct: 430 VRPVEGQIDDLLAEIKDRVAKGERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD IT ++  AI ET RRRE Q+++N +H I+PQ + +KI +V D +  ED
Sbjct: 550 NVSGTVIMYADDITDAMDKAITETNRRREIQMKYNDEHGIDPQPLIKKISDVNDMLAKED 609

Query: 741 AATTNISIDAQQL-----SLSKKKGKAHL------------------------------- 764
                  +D Q+L       + K G +HL                               
Sbjct: 610 -------VDTQELLEGGYRNANKAGNSHLGVPLTDADEAQRRHEELLKAGLPAQDLASLI 662

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + L  QMH AA+ L FE AAR+RDEI+ LK
Sbjct: 663 RQLSDQMHTAAEQLQFELAARLRDEIRDLK 692


>gi|309801200|ref|ZP_07695329.1| excinuclease ABC, B subunit [Bifidobacterium dentium JCVIHMP022]
 gi|308222089|gb|EFO78372.1| excinuclease ABC, B subunit [Bifidobacterium dentium JCVIHMP022]
          Length = 706

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/683 (51%), Positives = 469/683 (68%), Gaps = 31/683 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 15  FVVKSPYRPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 74

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 75  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 134

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK G  +++ ELL   V  QYKR 
Sbjct: 135 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKEGQQIDRDELLRMFVSMQYKRN 194

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I +   + I+
Sbjct: 195 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDHISTLHPLTGDVIDHEPQVHIF 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  IKEEL  R+ EL K+G+ LEAQRL  R TYDLEML   G C 
Sbjct: 254 PASHYVAGPERMERALATIKEELDQRVAELRKQGKELEAQRLTMRTTYDLEMLTQVGVCS 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 314 GVENYSRHFDGREPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPTGLVDP ++
Sbjct: 374 GFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLVDPKID 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL 
Sbjct: 433 VRPVDGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 493 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD +T+++  AIDET RRR+ Q+ +NK+H I+P+ + +KI +V D +  ED
Sbjct: 553 NVSGTVIMYADDVTEAMHKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDVNDMLAKED 612

Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771
                           A  +++ +     S S K+ +  LK+             L  QM
Sbjct: 613 VDTQTLLGTGYRNADKAGNSHLGVPTFDRSESDKRHEEILKAGLPAQDLADLIRQLSDQM 672

Query: 772 HLAADNLNFEEAARIRDEIKRLK 794
           H AA+ L FE AAR+RDEI+ LK
Sbjct: 673 HTAAEQLQFELAARLRDEIRDLK 695


>gi|319951903|ref|YP_004163170.1| uvrabc system protein b [Cellulophaga algicola DSM 14237]
 gi|319420563|gb|ADV47672.1| UvrABC system protein B [Cellulophaga algicola DSM 14237]
          Length = 662

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/662 (51%), Positives = 467/662 (70%), Gaps = 13/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP+AI QL++G+++ EK Q LLGVTGSGKTFT+A VIE +Q+P +V+A
Sbjct: 3   FKVVSEFKPAGDQPSAIKQLVEGLNTDEKYQTLLGVTGSGKTFTVANVIETVQKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P +  YIEK+ SINE I+++R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPSSGLYIEKDLSINEDIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IVV+SVSC+YGIG+   + + ++ +     + + + L  LV+  Y R
Sbjct: 123 STTSSLLSGRRDVIVVASVSCLYGIGNPVEFQKNVISVHKDQVISRTKFLHQLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                  G FRV GD +++FPS+  D A+R+  FG++IEEI  F PL   K+ + E + I
Sbjct: 183 TTADFRNGNFRVKGDVVDVFPSY-ADHAFRIHFFGDEIEEIEAFDPLKNTKLESYENLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+++I+++L  ++   ++ G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDILQNAIRHIQDDLVKQIDFFKEVGKPLEAKRLEERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ VDESHVTI Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVVDESHVTISQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL+   G+ VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQLSDGVFVEQIIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI    ++  R L+T LTKRMAE+L +YL   NIR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLVEEIQQRNEKDERTLVTTLTKRMAEELAKYLDRINIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+++LR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQNLRKGIFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N K I+YAD ITKS+Q  ID+T  RREKQ+ +N KHN+ P+++ +     +D +L +
Sbjct: 542 RNLNGKAIMYADKITKSMQQTIDDTNYRREKQMAYNAKHNLVPKALNKS----LDSVLAK 597

Query: 740 DAATT-NISIDAQQLS------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           ++ +T +   +  + +      L+K++ +  ++  RK M  AA  L+F +AA++RDEIK 
Sbjct: 598 NSVSTYHFEKEVARAAEPDLDYLTKEQIEKMIREKRKDMEKAAKELDFMQAAKLRDEIKM 657

Query: 793 LK 794
           L+
Sbjct: 658 LQ 659


>gi|110636435|ref|YP_676642.1| excinuclease ABC subunit B [Cytophaga hutchinsonii ATCC 33406]
 gi|123059095|sp|Q11Z64|UVRB_CYTH3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|110279116|gb|ABG57302.1| Excinuclease ABC subunit B [Cytophaga hutchinsonii ATCC 33406]
          Length = 673

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/666 (50%), Positives = 464/666 (69%), Gaps = 13/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQPAAI QL++G+   +  Q+LLGVTGSGKTFTMA VI+  Q+P +V++
Sbjct: 3   FNLTSKYEPTGDQPAAIKQLVEGVERNDPAQVLLGVTGSGKTFTMANVIQQTQKPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP N VEYF+SYYDYYQPEA++P +  YIEK+ +IN++I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPENLVEYFISYYDYYQPEAFMPTSGLYIEKDLAINQEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT SL+  R D IVV+SVSCIYGIG+ E + + IV L  G  + + +LL S V+  Y R
Sbjct: 123 SATSSLMSGRRDIIVVASVSCIYGIGNPEEFRKSIVVLHKGQQINRNKLLYSFVEILYNR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD+++++P++  D+A+R+ M+G+++E I    P TG++I   +++ +
Sbjct: 183 TTRDFTRGTFRVTGDTVDVYPAY-ADIAYRIQMWGDEVESIQMIEPETGKRISEQKSLTL 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VT + +LN A+ +I+++L  ++   E E R  EA+R+++R  +D+EM+   G C
Sbjct: 242 FPANLFVTGKDSLNNAIHHIQDDLMKQVQLFEMEKRYGEAKRIQERTEFDIEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PG+ P  L +Y P+D LL VDESHVTIPQI  M+ GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRMPGQRPFCLIDYFPDDFLLVVDESHVTIPQIRAMFGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS MDNRPL F+E+  +    I VSATP  +EL++ +G +VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPSAMDNRPLTFDEFESINTQAIYVSATPADYELQRSEGAVVEQIIRPTGLLDPQI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            I+    Q++D+ DEI    + G RIL+T LTKRMAE+LT++L    +R RY+HSEVKTL
Sbjct: 422 FIKPTVNQIDDLLDEIQERIEMGDRILVTTLTKRMAEELTKFLDGVGVRTRYIHSEVKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EI+R+LRLG FDVLVG+NLLREGLD+PE  LVAI+DADKEGFLR+  SL+QTIGRAA
Sbjct: 482 DRVEILRELRLGVFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRNVRSLVQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N KVI+YAD IT S+Q AIDET+RRR  QL +N+ H I P +V +   E++    + 
Sbjct: 542 RNSNGKVIMYADKITASMQQAIDETSRRRATQLAYNELHGITPITVNKSKDEIMGQTKVA 601

Query: 740 DAATTN-----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           D+   N           ++ D     L+K +    +   +K M  AA +L+F EAAR RD
Sbjct: 602 DSNKFNKQYIEPEGEPSLAADPVVAMLNKTELTKMIDRAKKDMDKAAKDLDFVEAARYRD 661

Query: 789 EIKRLK 794
           E+  L+
Sbjct: 662 EMFALQ 667


>gi|291456498|ref|ZP_06595888.1| excinuclease ABC subunit B [Bifidobacterium breve DSM 20213]
 gi|291381775|gb|EFE89293.1| excinuclease ABC subunit B [Bifidobacterium breve DSM 20213]
          Length = 703

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/683 (51%), Positives = 469/683 (68%), Gaps = 31/683 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AI +L + I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 12  FVVKSPYQPSGDQPQAITELSERIENGENDVVLMGATGTGKTATTAWLIEKLQRPTLIIE 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 72  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK+G  + + +LL   V  QYKR 
Sbjct: 132 QATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKVGQEINRDDLLRQFVAMQYKRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG +I     + I+
Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRISTLHPLTGDEIDEENEVHIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+K I+EEL  RL EL K+G+ LEAQRL  R TYDLEML   G C 
Sbjct: 251 PASHYVAGPERMERALKTIREELDERLAELRKQGKELEAQRLNMRTTYDLEMLTQVGVCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR  G PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 311 GVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPTGL+DP ++
Sbjct: 371 GFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLLDPKID 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL 
Sbjct: 430 VRPVKGQIDDLLGEIKARVDRNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD  T +++ AIDET RRR KQ+ +NK+H I+P+ + +KI +V D +  ED
Sbjct: 550 NVSGTVIMYADETTDAMRKAIDETDRRRAKQIAYNKEHGIDPKPLIKKISDVNDMLAKED 609

Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771
                           A  T++ +     + + K+ +  LK+             L +QM
Sbjct: 610 VDTQTLLEGGYRNAGKAGNTHLGVPVLDPNEADKRHEEILKAGLPAQDLADLIRQLSEQM 669

Query: 772 HLAADNLNFEEAARIRDEIKRLK 794
           H AA+ L FE AAR+RDEI+ LK
Sbjct: 670 HTAAEQLQFELAARLRDEIRDLK 692


>gi|152993729|ref|YP_001359450.1| excinuclease ABC subunit B [Sulfurovum sp. NBC37-1]
 gi|151425590|dbj|BAF73093.1| excinuclease ABC, B subunit [Sulfurovum sp. NBC37-1]
          Length = 657

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/657 (51%), Positives = 466/657 (70%), Gaps = 8/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQPAAI  L+K I S  + Q LLGVTGSGKT+TMAKVIE  ++P ++M 
Sbjct: 4   FTVNSPYSPAGDQPAAIDSLVKSIESGNRYQTLLGVTGSGKTYTMAKVIEKTKKPTLIMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK+FFP+N VEYF+SYYDYYQPEAY+PR D +IEK+SSINE+++R+R 
Sbjct: 64  HNKTLAAQLYSEFKSFFPNNHVEYFISYYDYYQPEAYLPRQDLFIEKDSSINEELERLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T SLL  +D IV++SVS  YG+GS E Y  ++ +L +G+   QKELL   V   YKR 
Sbjct: 124 STTASLLSHDDVIVIASVSANYGLGSPEDYKTIVQKLVVGEEYNQKELLLKFVDMGYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D     G FRV G+ ++I+P++ ++ A R+  FG+++E I EF  LTG+K R+++ + +Y
Sbjct: 184 DEFFDIGNFRVSGEVVDIYPAYSDEFAIRIEFFGDEVEAIYEFNSLTGEKNRDLKEVTVY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           + + ++  +  L  A+K I+EEL  RL   +KE R++E  RL+QR  +DLEM+E TG C+
Sbjct: 244 SANQFIVSKEKLARAVKTIEEELDERLSYFQKEDRMIEYNRLKQRTEFDLEMIEATGMCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTL---FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENYSR+LTG+ PGE P ++   FE + +D L+ VDESHV++ Q  GMY GD  RK  L
Sbjct: 304 GIENYSRHLTGKKPGETPYSMMDYFEAMHDDYLVIVDESHVSLSQFRGMYAGDRSRKEVL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS +DNRPL F+E+    P  + VSATP   E+E    ++ EQ++RPTGL+DP
Sbjct: 364 VDHGFRLPSALDNRPLMFDEYINKAPHYLFVSATPAPLEIE-LSSVVAEQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+  +  QVE+++D +    ++G RIL+TVLTK+MAE+LT Y  +  ++ RYMHS++ 
Sbjct: 423 EIEVIDSTYQVENLHDRMKPIIERGERILVTVLTKKMAEELTSYYNDLGLKARYMHSDLD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER ++IR LRLG+FD+LVGINLLREGLD+PE  LVAILDADKEGFLRSKTSLIQT GR
Sbjct: 483 AIERNQVIRSLRLGEFDILVGINLLREGLDLPEVSLVAILDADKEGFLRSKTSLIQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N KV++YA  +T S++  I+ T +RREKQ+ +NKKH I P +    I E+   + 
Sbjct: 543 AARNANGKVLMYAKKMTDSMKATIETTQQRREKQIVYNKKHGITPTTT---IRELDANLK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +EDA     +  ++   + K + +  +K L+ +M  AA NL FEEAAR+RDEI ++K
Sbjct: 600 VEDAGEL-YNKRSKLDKMPKAERQQLVKELKAKMLAAAKNLEFEEAARLRDEIAKVK 655


>gi|307153035|ref|YP_003888419.1| excinuclease ABC subunit B [Cyanothece sp. PCC 7822]
 gi|306983263|gb|ADN15144.1| excinuclease ABC, B subunit [Cyanothece sp. PCC 7822]
          Length = 665

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/664 (52%), Positives = 462/664 (69%), Gaps = 18/664 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q  + P+GDQP AI QL+  I    + Q LLG TG+GKTFT+A  IE + RP +V+A
Sbjct: 4   FYLQAPFQPTGDQPQAITQLIDSITRGNRFQTLLGATGTGKTFTIAATIEKIGRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID +RH
Sbjct: 64  HNKTLAAQLCNELRQFFPDNAVEYFISYYDYYQPEAYIPVSDTYIEKTASINDEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  + L++G+ + Q++LL  LV  QY R 
Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGMPSEYLKAAISLQVGEEINQRQLLRDLVSVQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FR+ GD +E+ P++ ED   RV  FG++I+ I    P+TGQ + +++ I +Y
Sbjct: 184 DLELQRGRFRLRGDVLELVPAY-EDRIIRVEFFGDEIDAIRYLDPVTGQILHSLDRINVY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP   L  A + I+ EL+ R+ ELEK+G+LLEAQRL QR  YDLE+L   G C 
Sbjct: 243 PARHFVTPDDQLEAACQAIELELEERVEELEKQGKLLEAQRLGQRCRYDLELLREVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L GR  GEPP  L +Y P+D LL +DESHVT+PQI GMY GD  RK  L E+
Sbjct: 303 GVENYSRHLAGRQAGEPPECLIDYFPKDWLLVIDESHVTVPQIRGMYNGDQSRKKVLIEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+       + VSATPG WE+EQ +G ++EQIIRPTG++DP + 
Sbjct: 363 GFRLPSAADNRPLKAEEFWQKVNQCVFVSATPGDWEIEQSEGRVMEQIIRPTGVLDPEIF 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI +  ++  R+L+T LTKRMAEDLTEY  ER I+V+Y+HSE+ ++E
Sbjct: 423 VRPTEGQVDDLLGEIKVRVKRNERVLITTLTKRMAEDLTEYFQERGIKVQYLHSEITSIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+++LR G+FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 483 RIEILQNLREGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++  + ILY D +T S+  A++ET RRR  Q+ +NK+H I PQ + ++    I   L   
Sbjct: 543 HIQGQAILYGDNLTDSMLKAMEETERRRNIQIAYNKRHGITPQPIIKRSSNAILSFL--- 599

Query: 741 AATTNIS--IDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
               +IS  ++AQQL         L  +K    +  L  +M  AA  L FEEAA+ RD I
Sbjct: 600 ----DISRRLNAQQLEQVYEQADELPLEKVPELIGQLEDKMKEAAKKLEFEEAAKYRDRI 655

Query: 791 KRLK 794
           + L+
Sbjct: 656 QHLR 659


>gi|255993949|ref|ZP_05427084.1| excinuclease ABC subunit B [Eubacterium saphenum ATCC 49989]
 gi|255993617|gb|EEU03706.1| excinuclease ABC subunit B [Eubacterium saphenum ATCC 49989]
          Length = 653

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/648 (50%), Positives = 460/648 (70%), Gaps = 6/648 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P GDQ  AI +L KGI    + Q L+GVTGSGKTFTMA +IE  Q+P +V++
Sbjct: 3   FKLHSKFSPMGDQKPAIEKLAKGIEEGRRHQTLMGVTGSGKTFTMAGLIEKAQKPTLVIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYF+SYYDYYQPEAY+P TDT+I+K++S N +ID++RH
Sbjct: 63  HNKTLAGQLYGEFKEFFPENAVEYFISYYDYYQPEAYIPSTDTHIDKDASTNFEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+GS   Y   ++ +++G+   + E+L  LV+ QY R 
Sbjct: 123 SATASLAERRDVIIVASVSCIYGLGSPFDYETQMLSIRLGEEKSRDEILKKLVEIQYHRA 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG+FRV GD I+I+PS  E+   R+ MFG++IE+I E   +TG+ +   + I IY
Sbjct: 183 DIDFSRGSFRVRGDVIDIYPSGSEN-PVRIEMFGDEIEDIREMNAVTGKLLGRRKHIAIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY++    L++A+  I ++L  RL   ++ G+ LEAQRLE+R  YD+E++   G+C+
Sbjct: 242 PATHYISTPDKLSSAITQISKDLGERLKWFKENGKFLEAQRLEERTRYDIELINEMGTCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+RY+ G   GE P TL +Y P+D L  +DESHV +PQ+  MY GD  RK TL +Y
Sbjct: 302 GIENYARYINGLKEGERPYTLIDYFPDDFLTIIDESHVMLPQLRAMYAGDRSRKTTLVDY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL+F E+  L    + VSATP  +E E+  GI  EQIIRPTGL++P ++
Sbjct: 362 GFRLPAALDNRPLKFSEFEELVNQVVYVSATPAEYEKEKSGGITCEQIIRPTGLLEPEID 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN  A++G R+L+T LTK+MAE L+ +L + +I+  YMHS++  +E
Sbjct: 422 VRPIEGQIDDLIGEINKVAERGERMLITTLTKKMAESLSAFLIDADIKACYMHSDIDAIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIR+LRLGK+DVL+GINLLREGLDIPE  +VAILDADKEGFLR++TSLIQTIGRAAR
Sbjct: 482 RMEIIRELRLGKYDVLIGINLLREGLDIPEVSVVAILDADKEGFLRTETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VILYAD I+ +++ A+DETTRRR+ Q  +N++HNI P+S+++ I E I+  +  +
Sbjct: 542 NANGRVILYADGISNAMKNAMDETTRRRKIQQRYNEEHNITPKSIQKDIRESIEATIEVE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                     +   +SKK+     K + K+M  AA +L FE AA +R+
Sbjct: 602 EEELK-----KPQEMSKKELSDFTKKIEKEMKQAAKDLQFERAAELRE 644


>gi|212716119|ref|ZP_03324247.1| hypothetical protein BIFCAT_01034 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661486|gb|EEB22061.1| hypothetical protein BIFCAT_01034 [Bifidobacterium catenulatum DSM
           16992]
          Length = 711

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/683 (51%), Positives = 472/683 (69%), Gaps = 31/683 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AI +L + I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 20  FVVKSPYKPSGDQPKAIEELAERIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 79

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 80  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 139

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ L+ G  +++ +LL + V  QYKR 
Sbjct: 140 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLEEGQQIDRDDLLRTFVAMQYKRN 199

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I +   + I+
Sbjct: 200 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIGHQSQVHIF 258

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I++EL  R  EL K+G+ LEAQRL  R TYDLEML   G C 
Sbjct: 259 PASHYVAGPQRMERALSTIQQELDQRTAELRKQGKELEAQRLTMRTTYDLEMLSQVGVCS 318

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 319 GVENYSRHFDGREPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 378

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G+ VEQIIRPTGLVDP ++
Sbjct: 379 GFRLPSAMDNRPLKWPEFQERVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLVDPQID 437

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  R+L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL 
Sbjct: 438 VRPVDGQIDDLLAEIKDRVNRNERVLITTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 497

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 498 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 557

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD IT+++  AIDET RRR+ Q+ +NK+H I+P+ + +KI +V D +  ED
Sbjct: 558 NVSGTVIMYADDITEAMHKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDVNDMLAKED 617

Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771
                           A  +++ + A     S ++ +  LK+             L +QM
Sbjct: 618 VDTQTLLGTGYRNADKAGNSHLGVPATSKEESDRRHEEILKAGLPAQDLADLIRQLSEQM 677

Query: 772 HLAADNLNFEEAARIRDEIKRLK 794
           H AA+ L FE AAR+RDEI+ LK
Sbjct: 678 HTAAEQLQFELAARLRDEIRDLK 700


>gi|57234749|ref|YP_181185.1| excinuclease ABC subunit B [Dehalococcoides ethenogenes 195]
 gi|90110883|sp|Q3Z9B4|UVRB_DEHE1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|57225197|gb|AAW40254.1| excinuclease ABC, B subunit [Dehalococcoides ethenogenes 195]
          Length = 668

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/657 (51%), Positives = 465/657 (70%), Gaps = 6/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+  +GDQP A+ +L +G+      Q LLGVTGSGKTFTMA VI  + RP ++++
Sbjct: 4   FKIVSDFALTGDQPQAVEKLSEGLAHGLTDQTLLGVTGSGKTFTMANVIARVNRPTLIIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K F P N+VEYFVSYYDYYQPEAYVP+ D YIEK++ INE+ID++RH
Sbjct: 64  HNKTLAAQLYSEMKEFLPENSVEYFVSYYDYYQPEAYVPQKDMYIEKDADINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATR+L ER D ++V+SVSCIYG+G  E Y   ++ LK G S+ +  +L  LV  QY+R 
Sbjct: 124 AATRALFERRDVVIVASVSCIYGLGEPEEYRSFVLPLKKGQSLRRDLILRRLVDMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FR+ GD++EI P++ E++A RV  FG++IE I    P++G+ + +++ I IY
Sbjct: 184 DIDFSRGKFRLRGDTLEIQPAY-EELALRVEFFGDEIERIVSLDPVSGELLADIDEINIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT    +  A+K I+ EL+ RL ELE EG++LEA RL+QR  YDLEM++  G C 
Sbjct: 243 PAKHFVTSAEKMAEAIKGIQAELEDRLKELEAEGKMLEAARLKQRTNYDLEMMQQAGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L GR  G  P TL +Y PED LL VDESH+++PQI GMY GD  RK TL +Y
Sbjct: 303 GVENYSRHLAGRKAGSAPWTLLDYFPEDFLLIVDESHMSLPQIRGMYAGDAARKKTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL F+E+       I VSATPG +E E  Q  +VEQ++RPTGL++P + 
Sbjct: 363 GFRLPSAMDNRPLSFDEFKARVKQAIYVSATPGPYEKEHSQQ-VVEQLVRPTGLLEPVIT 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ +E+     +  R+L+T LTK+M+E L +YL E  I+  Y+HSEV TLE
Sbjct: 422 VKPTGGQIDDLLEEVKKRVDKKERVLITTLTKKMSEKLADYLVEMGIKTHYLHSEVDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS+ +LIQT+GRAAR
Sbjct: 482 RVEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V+ +VI+YAD IT S+Q A+DE +RRR+ Q ++N+ HNI PQ +++ I ++ + I    
Sbjct: 542 HVDGQVIMYADKITGSMQRAMDEISRRRKIQEDYNRLHNITPQGIRKAIKDINERI---R 598

Query: 741 AATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + T  +S    + + + ++    L K L  QM  AA NL FE AA IRD +  L+++
Sbjct: 599 SVTAEVSGPEFRPAPTLREDIVRLIKELESQMKKAAKNLEFERAALIRDRVVELRAA 655


>gi|296111253|ref|YP_003621635.1| excinuclease ABC subunit B [Leuconostoc kimchii IMSNU 11154]
 gi|295832785|gb|ADG40666.1| excinuclease ABC subunit B [Leuconostoc kimchii IMSNU 11154]
          Length = 627

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/627 (51%), Positives = 454/627 (72%), Gaps = 6/627 (0%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           +LG TG+GKTFT++ VI+++++P +V++ NK LA QLYSE K FFP+NAVEYFVSYYDYY
Sbjct: 1   MLGATGTGKTFTISNVIKSVKKPTLVLSHNKTLAGQLYSELKEFFPNNAVEYFVSYYDYY 60

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           QPEAYVP +DT+IEK+S++N++ID++R+SAT SLL RND IVV+SVS I+G+G    Y +
Sbjct: 61  QPEAYVPSSDTFIEKDSAVNDEIDQLRNSATSSLLSRNDVIVVASVSSIFGLGDPHQYQE 120

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
            ++ L++G+   + +L+  L+  Q+ R DI   RGTFRV GD +EIFP+  +++A RV  
Sbjct: 121 HVINLRVGNEYGRDQLMRDLIDVQFTRNDIDFHRGTFRVRGDVMEIFPASEDEMALRVEF 180

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG++I+ I E   LTG+     + + IY   H++T    + TA+  IK+E+  ++   E 
Sbjct: 181 FGDEIDRIREINSLTGETSSERDFVAIYPAKHFMTDDDQMRTALAGIKQEMLAQVALFES 240

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           EG+L+EAQR++QR  YDL MLE  G    IENYSR++ GR PGEPP TL ++ P+D L+ 
Sbjct: 241 EGKLIEAQRIKQRTEYDLSMLEEMGFVGGIENYSRWMDGRQPGEPPFTLLDFFPDDFLIV 300

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
            DESHVT+PQ+ GM+ GD  RK TL  YGFRLPS +DNRPL+  E+       I +SATP
Sbjct: 301 ADESHVTMPQVRGMFNGDKARKETLVNYGFRLPSALDNRPLKLPEFEKHVNQIIYMSATP 360

Query: 533 GSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
           G +ELE+  +  + +QIIRPTGL+DP +E+R    Q++D+  EIN  A +  R+ +T LT
Sbjct: 361 GDYELERVTENHVAQQIIRPTGLLDPEIEVRPVMGQIDDLVGEINQRASKDERVFITTLT 420

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           KRMAEDLT+YL    I+V Y+H+++KTLER EIIRDLRLGK+DVL+GINLLREG+D+PE 
Sbjct: 421 KRMAEDLTDYLKNVGIKVAYLHADIKTLERTEIIRDLRLGKYDVLIGINLLREGIDVPEV 480

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
            LVAILDADKEGFLR+  SLIQTIGRAARN N  VI+YAD +T+S+Q AIDET RRRE Q
Sbjct: 481 SLVAILDADKEGFLRNPRSLIQTIGRAARNANGHVIMYADKVTRSMQSAIDETARRRESQ 540

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS---LSKKKGKAHLKSLR 768
           L++N K+ I P ++K++I ++I   +  D+     ++D  Q++   L K + ++ + ++ 
Sbjct: 541 LQYNSKNGITPTTIKKEIRDLIS--VRTDSTDGQATVDLTQVAFKDLPKDEQQSIIANME 598

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKS 795
            QM  AA +L+FEEAA++RD +  LK+
Sbjct: 599 SQMKAAAKSLDFEEAAQLRDSVMELKA 625


>gi|227546156|ref|ZP_03976205.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239621802|ref|ZP_04664833.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|312133005|ref|YP_004000344.1| uvrb [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481891|ref|ZP_07940918.1| excinuclease ABC [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688833|ref|YP_004208567.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis
           157F]
 gi|322690821|ref|YP_004220391.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|227213137|gb|EEI81009.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239514993|gb|EEQ54860.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|291517106|emb|CBK70722.1| Excinuclease ABC subunit B [Bifidobacterium longum subsp. longum
           F8]
 gi|311773991|gb|ADQ03479.1| UvrB [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916682|gb|EFV38077.1| excinuclease ABC [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455677|dbj|BAJ66299.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|320460169|dbj|BAJ70789.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis
           157F]
          Length = 703

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/683 (51%), Positives = 471/683 (68%), Gaps = 31/683 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AIA+L + I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 12  FVVKSPYKPSGDQPQAIAELAERIENGENDVVLMGATGTGKTATTAWLIEKLQRPTLIIE 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 72  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK+G  + + +LL   V  QYKR 
Sbjct: 132 QATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKVGQEINRDDLLRQFVAMQYKRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG +I     + I+
Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRISTLHPLTGDEIDEENEVHIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+K I+EEL  RL EL K+G+ LEAQRL  R TYDLEML   G C 
Sbjct: 251 PASHYVAGPERMERALKTIREELDERLAELRKQGKELEAQRLNMRTTYDLEMLTQVGVCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR  G PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 311 GVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +E+    G +VEQIIRPTGL+DP ++
Sbjct: 371 GFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYEMGLSDG-VVEQIIRPTGLLDPKID 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL 
Sbjct: 430 VRPVKGQIDDLLAEIKARVAKNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD  T++++ AIDET RRR KQ+ +N++H I+P+ + +KI +V D +  ED
Sbjct: 550 NVSGTVIMYADETTEAMRQAIDETDRRRAKQIAYNQEHGIDPKPLIKKISDVNDMLAKED 609

Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771
                           A  T++ +     + + K+ +  LK+             L +QM
Sbjct: 610 VDTQTLLEGGYRNAGKAGNTHLGVPVLDPNEADKRHEEILKAGLPAQDLADLIRQLSEQM 669

Query: 772 HLAADNLNFEEAARIRDEIKRLK 794
           H AA+ L FE AAR+RDEI+ LK
Sbjct: 670 HTAAEQLQFELAARLRDEIRDLK 692


>gi|119025694|ref|YP_909539.1| excinuclease ABC subunit B [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765278|dbj|BAF39457.1| UvrABC system protein B [Bifidobacterium adolescentis ATCC 15703]
          Length = 696

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/685 (51%), Positives = 468/685 (68%), Gaps = 35/685 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 5   FVVKSPYKPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 65  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ L+ G  +++ +LL   V  QYKR 
Sbjct: 125 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLQEGQQIDRDDLLRKFVDMQYKRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I +   + I+
Sbjct: 185 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIAHESQVHIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+K I++EL  R  EL K+G+ LEAQRL  R TYDLEML   G+C 
Sbjct: 244 PASHYVAGAERMERALKTIQQELDERTAELHKQGKELEAQRLTMRTTYDLEMLSQVGTCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 304 GVENYSRHFDGRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G+ VEQIIRPTGLVDP ++
Sbjct: 364 GFRLPSAMDNRPLKWPEFQERVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLVDPQID 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL 
Sbjct: 423 VRPVEGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 483 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  V++YAD IT++++ AIDET RRR+ Q+ +NK+H I+P+ + +KI +V D +  ED
Sbjct: 543 NVSGTVVMYADDITEAMRKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDVNDMLAKED 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHL-------------------------------KSLRK 769
             T  +         + K G +HL                               + L +
Sbjct: 603 VDTQTLL--GTGYRNADKAGNSHLGVPHTSKEESGRRHEEILKAGLPAQDLADLIRQLSE 660

Query: 770 QMHLAADNLNFEEAARIRDEIKRLK 794
           QMH AA+ L FE AAR+RDEI+ LK
Sbjct: 661 QMHTAAEQLQFELAARLRDEIRDLK 685


>gi|83815715|ref|YP_445286.1| excinuclease ABC subunit B [Salinibacter ruber DSM 13855]
 gi|83757109|gb|ABC45222.1| excinuclease ABC, B subunit [Salinibacter ruber DSM 13855]
          Length = 691

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/668 (51%), Positives = 472/668 (70%), Gaps = 18/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++D+ P GDQP AI +L+ G+   ++ Q LLG TG+GKTFT+A VIE + +P +VM+
Sbjct: 12  FQLESDFEPMGDQPQAIRELVDGVGRGDEHQTLLGATGTGKTFTVANVIEEVNKPTLVMS 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYF+SYYDYYQPE+Y+   DTYIEK+ +IN++I+R+R 
Sbjct: 72  HNKTLAAQLYGELKQFFPNNAVEYFISYYDYYQPESYIVPNDTYIEKDVAINDRIERLRL 131

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT  L+  R+D IVV+SVSCIYG+GS   + + I+ L+ G  VE+ +LL   +   Y+R
Sbjct: 132 RATSELVSGRDDVIVVASVSCIYGLGSPAEFQKEILPLERGLEVERNDLLRRFIDLFYER 191

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI    GTFRV GD ++IFP++ E++A R+  +G++I+ ++ F P +G+++  V    +
Sbjct: 192 NDIEFTPGTFRVRGDVVDIFPAYREEIALRIEFWGDEIDRLALFEPESGRELEEVNQFTL 251

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +VTP   L  A++ IKEEL+ RL  L +EG+++EAQRLEQR  +DLEM++  G C
Sbjct: 252 YPAQIFVTPDDRLERAIEDIKEELRWRLAVLREEGKMVEAQRLEQRTMFDLEMMQEVGYC 311

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LTGR PGE P  L +Y P+D +L VDESHVTIPQ+  MY GD  RK  L E
Sbjct: 312 SGIENYSRHLTGREPGERPYCLLDYFPDDFMLVVDESHVTIPQVRAMYNGDRQRKLKLVE 371

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL FEE+  L P TI +SATP  +ELEQ  G+ VEQ++RPTG+ DP V
Sbjct: 372 HGFRLPSALDNRPLTFEEFEELTPQTIYMSATPADYELEQSGGVFVEQVVRPTGIPDPEV 431

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R    QV+D+ +EI   A++G R+L+T LTKRM EDL +YL    + VR+MHS++  L
Sbjct: 432 DVRPTGNQVDDLMEEIRKRAEKGERVLVTTLTKRMTEDLADYLDSYGVDVRWMHSDIDAL 491

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++IIR LRLG++DVLVG+NLLREGLD+PE  LVAILDAD++GFLRS+TSLIQT GRAA
Sbjct: 492 ERVDIIRGLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADQQGFLRSETSLIQTAGRAA 551

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL- 738
           RNVN +VILYAD IT ++Q  IDET RRRE+QLE+N+ H++ P+ +++   E+     + 
Sbjct: 552 RNVNGEVILYADEITDAMQKMIDETERRRERQLEYNETHDVTPEPIRKSPDEIKMGTAIA 611

Query: 739 ------EDAATTNISIDAQQLS----------LSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                 E++ + +      QLS          LS+ + +  +  +R++M  AA+NL FE 
Sbjct: 612 DEKSEGEESGSRHHYGSPDQLSSEVADPVVEYLSEDQKEDLVDQMREEMEEAAENLEFER 671

Query: 783 AARIRDEI 790
           AA +RD I
Sbjct: 672 AAELRDSI 679


>gi|294507156|ref|YP_003571214.1| UvrABC system protein B [Salinibacter ruber M8]
 gi|294343484|emb|CBH24262.1| UvrABC system protein B [Salinibacter ruber M8]
          Length = 691

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/668 (51%), Positives = 472/668 (70%), Gaps = 18/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++D+ P GDQP AI +L+ G+   ++ Q LLG TG+GKTFT+A VIE + +P +VM+
Sbjct: 12  FQLESDFEPMGDQPQAIRELVDGVGRGDEHQTLLGATGTGKTFTVANVIEEVNKPTLVMS 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYF+SYYDYYQPE+Y+   DTYIEK+ +IN++I+R+R 
Sbjct: 72  HNKTLAAQLYGELKQFFPNNAVEYFISYYDYYQPESYIVPNDTYIEKDVAINDRIERLRL 131

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT  L+  R+D IVV+SVSCIYG+GS   + + I+ L+ G  VE+ +LL   +   Y+R
Sbjct: 132 RATSELVSGRDDVIVVASVSCIYGLGSPAEFRKEILPLERGLEVERNDLLRRFIDLFYER 191

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI    GTFRV GD ++IFP++ E++A R+  +G++I+ ++ F P +G+++  V    +
Sbjct: 192 NDIEFTPGTFRVRGDVVDIFPAYREEIALRIEFWGDEIDRLALFEPESGRELEEVNQFTL 251

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +VTP   L  A++ IKEEL+ RL  L +EG+++EAQRLEQR  +DLEM++  G C
Sbjct: 252 YPAQIFVTPDDRLERAIEDIKEELRWRLAVLREEGKMVEAQRLEQRTMFDLEMMQEVGYC 311

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LTGR PGE P  L +Y P+D +L VDESHVTIPQ+  MY GD  RK  L E
Sbjct: 312 SGIENYSRHLTGREPGERPYCLLDYFPDDFMLVVDESHVTIPQVRAMYNGDRQRKLKLVE 371

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL FEE+  L P TI +SATP  +ELEQ  G+ VEQ++RPTG+ DP V
Sbjct: 372 HGFRLPSALDNRPLTFEEFEELTPQTIYMSATPADYELEQSGGVFVEQVVRPTGIPDPEV 431

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R    QV+D+ +EI   A++G R+L+T LTKRM EDL +YL    + VR+MHS++  L
Sbjct: 432 DVRPTGNQVDDLMEEIRKRAEKGERVLVTTLTKRMTEDLADYLDSYGVDVRWMHSDIDAL 491

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++IIR LRLG++DVLVG+NLLREGLD+PE  LVAILDAD++GFLRS+TSLIQT GRAA
Sbjct: 492 ERVDIIRGLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADQQGFLRSETSLIQTAGRAA 551

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL- 738
           RNVN +VILYAD IT ++Q  IDET RRRE+QLE+N+ H++ P+ +++   E+     + 
Sbjct: 552 RNVNGEVILYADEITDAMQKMIDETERRRERQLEYNETHDVTPEPIRKSPDEIKMGTAIA 611

Query: 739 ------EDAATTNISIDAQQLS----------LSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                 E++ + +      QLS          LS+ + +  +  +R++M  AA+NL FE 
Sbjct: 612 DEKSEGEESGSRHHYGSPDQLSSEVADPVVEYLSEDQKEDLVDQMREEMEEAAENLEFER 671

Query: 783 AARIRDEI 790
           AA +RD I
Sbjct: 672 AAELRDSI 679


>gi|86142267|ref|ZP_01060777.1| excinuclease ABC subunit B [Leeuwenhoekiella blandensis MED217]
 gi|85831019|gb|EAQ49476.1| excinuclease ABC subunit B [Leeuwenhoekiella blandensis MED217]
          Length = 666

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/655 (51%), Positives = 459/655 (70%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q+++ P+GDQP AI QL+ GI + E+ Q LLGVTGSGKTFT+A V++ +Q+P +V+A
Sbjct: 3   FNIQSEFKPTGDQPGAIEQLVGGIDAGERYQTLLGVTGSGKTFTVANVLQEVQKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P + TYIEK+ SINE+I+++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYIPTSGTYIEKDLSINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IVV+SVSC+YGIG+   + + ++ L+    + + +LL  LV+  Y R
Sbjct: 123 STTSSLLSGRRDIIVVASVSCLYGIGNPVEFQKNVIALERDMVISRTQLLKRLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RG FR+ GD+++I+P + +D A+RV  FG++IEEI  F   T + +   + + I
Sbjct: 183 TTAEFNRGNFRIKGDTVDIYPGY-DDHAFRVHFFGDEIEEIEAFDVTTNEVLEKYDRLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I  ++  ++   ++ G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLQNAIDQIGFDMVKQVEYFKEIGKHLEAKRLEERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ +DESHVT+ Q+S MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVIDESHVTVSQVSAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL++ +G  VEQIIRPTGL+DP V
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQKSEGTYVEQIIRPTGLLDPIV 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI    ++  R L+T LTKRMAE+LT+YL   +IR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLIEEIQKRVEKDERTLVTTLTKRMAEELTKYLTRVDIRTRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QTIGRAA
Sbjct: 482 ERVEIMSDLRKGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736
           RN+N   I+YADTIT+S+Q  ID +  RR+KQ+ +N+KH + P ++K+ +   +   +  
Sbjct: 542 RNINGLAIMYADTITRSMQETIDTSEYRRQKQIAYNEKHGLKPMAIKKSLDNALAKKEKF 601

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
             E    TN++ +     +SK K +  ++  RKQM  AA  L+F EAA++RD IK
Sbjct: 602 KFEAEELTNVAAEPDTAYMSKPKLEKLIRDTRKQMEAAAKELDFMEAAKLRDRIK 656


>gi|311064144|ref|YP_003970869.1| excinuclease ABC subunit B [Bifidobacterium bifidum PRL2010]
 gi|310866463|gb|ADP35832.1| UvrB Excinuclease ABC subunit B [Bifidobacterium bifidum PRL2010]
          Length = 703

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/683 (51%), Positives = 472/683 (69%), Gaps = 31/683 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 12  FVVKSPYKPSGDQPQAIEELSTRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 72  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ L+ G  +++ +LL   V  QYKR 
Sbjct: 132 QATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLQEGQQIDRDQLLRKFVDMQYKRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I +  ++ I+
Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIDHETSVHIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+K IKEEL  R+ EL+K+G+ LEAQRL  R TYDLEML   G C 
Sbjct: 251 PASHYVAGPERMEHALKTIKEELDQRVAELKKQGKELEAQRLTMRTTYDLEMLTQVGVCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+   R PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 311 GVENYSRHFDNRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G+ VEQIIRPTGLVDP ++
Sbjct: 371 GFRLPSAMDNRPLKWPEFLDRVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLVDPKID 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + QV+D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL 
Sbjct: 430 VRPTKGQVDDLLAEIKDRVDKNERTLVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD  T +++ AIDET RRR +Q+ +NK+H I+P+ + +KI +V D +  ED
Sbjct: 550 NVSGTVIMYADETTDAMRKAIDETDRRRVRQIAYNKEHGIDPKPLIKKISDVNDMLAKED 609

Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771
                           A  T++ + +   + + K+ +  LK+             L +QM
Sbjct: 610 VDTATLLEGGYRNAGKAGNTHLGVPSLDAAEADKRHEEILKAGLPAQDLADLIRQLSEQM 669

Query: 772 HLAADNLNFEEAARIRDEIKRLK 794
           H AA+ L FE AAR+RDEI+ LK
Sbjct: 670 HTAAEQLQFELAARLRDEIRDLK 692


>gi|260062196|ref|YP_003195276.1| excinuclease ABC subunit B [Robiginitalea biformata HTCC2501]
 gi|88783758|gb|EAR14929.1| excinuclease ABC subunit B [Robiginitalea biformata HTCC2501]
          Length = 662

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/662 (51%), Positives = 464/662 (70%), Gaps = 13/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQPAAIAQL  GI   ++ Q LLGVTGSGKTFT+A V+E +QRP +V+A
Sbjct: 3   FKVVSEFQPTGDQPAAIAQLSGGIREGDRYQTLLGVTGSGKTFTVANVVEQVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P +  YIEK+ SINE I+++R 
Sbjct: 63  HNKTLAAQLYSEFKMFFPENAVEYFVSYYDYYQPEAYIPTSGLYIEKDLSINEDIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D +VV+SVSC+YGIG+   + + ++ L+    + +  L+  LV+  Y R
Sbjct: 123 STTSSLLSGRRDVLVVASVSCLYGIGNPIEFQKNVIHLERDQVLARTRLMHQLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                  G FRV GD +++FP +  D A+R+  FG++IE I  F P   + I   ET+ I
Sbjct: 183 TTADFRNGNFRVRGDVLDVFPGY-ADHAFRIHFFGDEIEAIEAFDPYNNKVIEEYETLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+++L  ++   ++ G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLQEAIHKIQDDLTAQVAYFKEIGKPLEAKRLEERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ VDESHVTIPQ+  MY GD  RK  L  
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVVDESHVTIPQVHAMYGGDRSRKENLVN 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +E++Q  G+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYEMQQSGGVYVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  Q+  R L+T LTKRMAE+LT+YL   ++R RY+HS+V TL
Sbjct: 422 EVRPSENQIDDLVEEIQLRVQRDERTLVTTLTKRMAEELTKYLTRIDVRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVLVG+NLLREGLD+PE  LVAI+DADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGIFDVLVGVNLLREGLDLPEVSLVAIIDADKEGFLRSNRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           R++  K I+YADT+T S+Q  IDET  RR+KQL++NK+H I P+++K+     +D +L  
Sbjct: 542 RHLQGKAIMYADTVTDSMQKTIDETNYRRQKQLDYNKEHGITPRALKKN----LDSVLAR 597

Query: 740 DAATT----NISIDAQQ---LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           ++ +T        DA++     L+K++ +  ++  RK M  AA +L+F +AA++RDEIK 
Sbjct: 598 NSVSTFHFEKKERDAREPDPAYLTKEQKEELIRKKRKDMERAAKDLDFMQAAKLRDEIKV 657

Query: 793 LK 794
           L+
Sbjct: 658 LQ 659


>gi|37521424|ref|NP_924801.1| excinuclease ABC subunit B [Gloeobacter violaceus PCC 7421]
 gi|81834371|sp|Q7NJH7|UVRB_GLOVI RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|35212421|dbj|BAC89796.1| excinuclease ABC subunit B [Gloeobacter violaceus PCC 7421]
          Length = 680

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/675 (52%), Positives = 456/675 (67%), Gaps = 27/675 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   Y P+GDQP AIAQL  G       Q LLG TG+GKTFT+A VIE + +P +V+A
Sbjct: 6   FVVSAPYRPTGDQPRAIAQLSAGALGGVTFQTLLGATGTGKTFTIANVIEKVGKPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK +SIN++ID +RH
Sbjct: 66  HNKTLAAQLCNELREFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKSASINDEIDMLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+SVSCIYG+G  E Y +  + LK+G +++Q+ELL  LV  QY+R 
Sbjct: 126 SATRSLFERRDVIVVASVSCIYGLGMPEEYLRAAIPLKVGSNIDQRELLRQLVTVQYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + RG FRV GD +EI P++ ED   RV  FG+++E +    P+TG+ +R+V ++ IY
Sbjct: 186 DIDLGRGRFRVRGDVVEIGPAY-EDRIIRVEFFGDEVEAVRWLDPVTGEVVRSVNSLNIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP   L  A   I++EL+ R+ ELE E +LLEAQR++QR  YDLEML   G C 
Sbjct: 245 PAKHFVTPEEQLEQACIAIEQELEARVAELEGENKLLEAQRIKQRTRYDLEMLREVGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L  R PGE P  L +Y P+D LL VDESHVTIPQI GMY GD  RK  L ++
Sbjct: 305 GVENYSRHLAARRPGEAPSCLIDYFPQDWLLVVDESHVTIPQIRGMYNGDAQRKKVLIDH 364

Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGI------------IVEQ 547
           GFRLPS  DNRPL+  E W+ +R   I VSATPG WE+E   G             + EQ
Sbjct: 365 GFRLPSAADNRPLKAPEFWDKVR-QAIFVSATPGDWEVELSGGGRDPETGRMAGEHVAEQ 423

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           IIRPTG++DP V +R    QV+D+  EI+    +  R+L+T LTKRMAEDLTEY  ER +
Sbjct: 424 IIRPTGVLDPEVFVRPVAGQVDDLLHEIHDRVARRERVLVTTLTKRMAEDLTEYFQERGV 483

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +VRY+HSE++ +ERIEI++ LR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR+
Sbjct: 484 KVRYLHSEIQAIERIEILQALRQGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRA 543

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           + SLIQTIGRAAR+V  +VI+YAD +T S+  AI ET RRR+ Q  +N  H + PQ + +
Sbjct: 544 ERSLIQTIGRAARHVRGQVIMYADRLTASMDKAISETERRRQIQRAYNAAHGLTPQPIVK 603

Query: 728 KIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH--------LKSLRKQMHLAADNLN 779
           +    +D   + D    +  ++ Q+L  +               +  L  QM  AA  L 
Sbjct: 604 R----LDANSILDYLAVSRRLNQQELEAAAAAPAEVALADIPELVSQLEIQMRDAAKKLE 659

Query: 780 FEEAARIRDEIKRLK 794
           FE+AA  RD+I +L+
Sbjct: 660 FEKAAEYRDKIHKLR 674


>gi|229826544|ref|ZP_04452613.1| hypothetical protein GCWU000182_01919 [Abiotrophia defectiva ATCC
           49176]
 gi|229789414|gb|EEP25528.1| hypothetical protein GCWU000182_01919 [Abiotrophia defectiva ATCC
           49176]
          Length = 663

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/654 (52%), Positives = 463/654 (70%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI +L++G     + Q LLGVTGSGKTFTMA VI  +  P +V++
Sbjct: 4   FILHSEYAPTGDQPQAIEELVEGFKEGNQFQTLLGVTGSGKTFTMANVIAKLNLPTLVIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH
Sbjct: 64  HNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D +VVSSVSCIYG+G    Y  M + ++ G   + +E++  L+  QY R 
Sbjct: 124 SATAALSERKDVVVVSSVSCIYGLGDPIDYEDMTLSVRPGQIKDMEEVIRRLIDIQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFR+ GD +EIFP    D A R+  FG++I+ ISE   LTG  +  +  + I+
Sbjct: 184 DMDFKRGTFRIRGDVVEIFPVASTDKAVRLEFFGDEIDRISEIDVLTGTTVAELAHVVIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A SHYV     +  A+  ++EEL +R+   + E +L+EAQR+++R  +D+EM+  TG C 
Sbjct: 244 AASHYVVAPEKMKEALSRLEEELDLRVKYFKSEDKLIEAQRIKERTNFDIEMMRETGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  L+GR  G  P TL +Y P++ L+ VDESH+TIPQI GMY GD  RK TL +Y
Sbjct: 304 GIENYSGPLSGRPSGSMPFTLIDYFPDEFLIIVDESHITIPQIGGMYAGDRSRKTTLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATP  +E +  + +  EQIIRPTGLVDP + 
Sbjct: 364 GFRLPSALDNRPLNFTEFENKIDRMLFVSATPSEYEAKH-ELLRTEQIIRPTGLVDPEII 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+  E+    ++  ++L+T LTK+MAEDLT+Y+ E  IRVRY+HS++ TLE
Sbjct: 423 VKPTAGQIDDLISEVKKETEKKNKVLVTTLTKKMAEDLTDYMREAGIRVRYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RSEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YADTIT S+  AI ET RRR  Q+++N++H + PQ++K+K+ ++I      +
Sbjct: 543 NADGHVIMYADTITGSMNRAITETERRRAIQMKYNEEHGVVPQTIKKKVRDLISISKKVE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             ++ I  DA+  S+S+ + KA +K L K+M+ AA  LNFE AA++RDEI  LK
Sbjct: 603 EDSSKIIKDAE--SMSEAELKAVIKELTKKMNQAAVELNFETAAKLRDEIIELK 654


>gi|312130377|ref|YP_003997717.1| excinuclease abc, b subunit [Leadbetterella byssophila DSM 17132]
 gi|311906923|gb|ADQ17364.1| excinuclease ABC, B subunit [Leadbetterella byssophila DSM 17132]
          Length = 674

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/666 (50%), Positives = 463/666 (69%), Gaps = 13/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + + P+GDQP AI QL+  + S EK  +LLGVTGSGKTFT+A VI+ +  P ++++
Sbjct: 3   YKLTSAFQPTGDQPQAIEQLVASVQSGEKATVLLGVTGSGKTFTIANVIQRLDMPVLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+  T+TYIEK+  IN++ID++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPENAVEYFISYYDYYQPEAYIATTNTYIEKDLMINQEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S   SL+  R D IVV+SVSCIYG G+   + Q IV++ +GD++ +  LL  LV   Y R
Sbjct: 123 STVSSLMSGRKDVIVVASVSCIYGAGNPNEFKQSIVKVGVGDTISRNRLLYDLVAILYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +    RGTFRV GD+++I+P +  D A R+  +G+++EEI    P +G+KI++   I I
Sbjct: 183 TEAEFNRGTFRVKGDTVDIYPGY-ADFAIRIIFWGDEVEEIQTIDPHSGKKIKSETKISI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VT +  L T+++ I+++L  ++   E EGR +EA+R+++R  +DLEM+   G C
Sbjct: 242 FPANLFVTGKDALQTSIRQIQDDLVTQIKYFESEGRQIEAERIQERTEFDLEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY   R PGE P  L +Y  +D LL VDESHV+IPQI  MY GD  RK +L E
Sbjct: 302 NGIENYSRYFDRRMPGERPFCLLDYFQDDFLLVVDESHVSIPQIGAMYGGDRSRKTSLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL F+E+  L P TI VSATP ++EL +  G++VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPSALDNRPLTFQEFEQLTPQTIYVSATPANYELNKAGGVVVEQIIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EIN   ++  R L+T LTKRMAE+L+ YL    I+V Y+HSE+KT+
Sbjct: 422 EVRPSLNQIDDLLEEINDRIKKEERTLVTTLTKRMAEELSRYLERIGIKVAYIHSEIKTM 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EI+R+LRLG  DVLVG+NLLREGLD+PE  LVAI+DADKEGFLR   SLIQTIGRAA
Sbjct: 482 DRVEILRELRLGTIDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRDNRSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIME----- 731
           RN N KVI+YAD IT S+Q AIDET RRR  Q+E+NK H I P+++   KE IME     
Sbjct: 542 RNSNGKVIMYADKITGSMQQAIDETQRRRAIQMEYNKAHGITPKTILKSKEAIMEQTSIA 601

Query: 732 ---VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
               +      +    NI+ D     ++K++ +  ++  +  M  AA  LNF +AAR RD
Sbjct: 602 DFKAVPKSYYVEPDKANIAADPVVAYMNKEQLEKLMQEAKSNMEKAASELNFLQAARYRD 661

Query: 789 EIKRLK 794
           E+ +L+
Sbjct: 662 EMLQLQ 667


>gi|298491889|ref|YP_003722066.1| excinuclease ABC subunit B ['Nostoc azollae' 0708]
 gi|298233807|gb|ADI64943.1| excinuclease ABC, B subunit ['Nostoc azollae' 0708]
          Length = 665

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/663 (51%), Positives = 461/663 (69%), Gaps = 8/663 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F +Q  + P+GDQP AIAQL+  I +  + Q LLG TG+GKTF++A VIE +++P +
Sbjct: 1   MTEFSLQAPFSPTGDQPQAIAQLITSIEAGNRYQTLLGATGTGKTFSIAAVIEKVRKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK ++IN++ID 
Sbjct: 61  VLAHNKTLAAQLCNEMREFFPNNAVEYFVSYYDYYQPEAYIPVTDTYIEKTAAINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  + L+IG  V+Q+++L  L   QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGMPAEYLKAAIPLQIGMEVDQRQILRDLTSVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ + +++ +
Sbjct: 181 SRNDVEMGRGKFRVRGDLLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEILSSLQAV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H++TP   L  A + I  ELK + + LE+ G+L+EAQR++QR  YDLEML    
Sbjct: 240 NVYPARHFITPEQRLEVACEDISAELKQQKLALEELGKLVEAQRIDQRTRYDLEMLREVR 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  GEPP  L +Y P+D LL +DESHVT+PQI GMY GD  RK  L
Sbjct: 300 YCNGVENYSRHLAGRQAGEPPECLLDYFPKDWLLVIDESHVTVPQIRGMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+       I VSATPG+WE+E  +  I+EQ+IRPTG+VDP
Sbjct: 360 IDHGFRLPSAADNRPLKAEEFWQKANQCIFVSATPGNWEVEVSEDNIIEQVIRPTGVVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R    QV+++  EI    +   R L+T LTKRMAEDLTEYL  + ++VRY+HSE+ 
Sbjct: 420 EVLVRPTEGQVDNLLGEIKDRVELKERTLITTLTKRMAEDLTEYLEHKGVQVRYLHSEIN 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           +++RIEI++DLR GKFDVLVG+NLLREGLD+PE  LVAI+DADKEGFLR++ SLIQTIGR
Sbjct: 480 SIQRIEILQDLRNGKFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR++  KVI+YAD +T S+  AIDET RRR  Q  +NK + I P+ V +K    I   L
Sbjct: 540 AARHIQGKVIMYADKLTDSMIKAIDETDRRRGIQTAYNKMYGITPKPVVKKSSNAILSFL 599

Query: 738 LEDAA----TTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             D +    T ++ +  + L  L  +     +  L KQM  AA  + FEEAA++RD IK 
Sbjct: 600 --DVSRRLNTRDLKVVDKHLDELWLEDIPELITLLEKQMKEAAKKMEFEEAAKLRDRIKH 657

Query: 793 LKS 795
           L+ 
Sbjct: 658 LRG 660


>gi|310287296|ref|YP_003938554.1| Excinuclease ABC subunit B [Bifidobacterium bifidum S17]
 gi|309251232|gb|ADO52980.1| Excinuclease ABC subunit B [Bifidobacterium bifidum S17]
          Length = 703

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/683 (51%), Positives = 472/683 (69%), Gaps = 31/683 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 12  FVVKSPYKPSGDQPQAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 72  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ L+ G  +++ +LL   V  QYKR 
Sbjct: 132 QATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLQEGQQIDRDQLLRKFVGMQYKRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I +  ++ I+
Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIDHETSVHIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+K IKEEL  R+ EL+K+G+ LEAQRL  R TYDLEML   G C 
Sbjct: 251 PASHYVAGPERMEHALKTIKEELDQRVAELKKQGKELEAQRLTMRTTYDLEMLTQVGVCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+   R PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 311 GVENYSRHFDNRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G+ VEQIIRPTGLVDP ++
Sbjct: 371 GFRLPSAMDNRPLKWPEFLDRVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLVDPKID 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL 
Sbjct: 430 VRPTKGQIDDLLAEIKDRVDKNERTLVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD  T +++ AIDET RRR +Q+ +NK+H I+P+ + +KI +V D +  ED
Sbjct: 550 NVSGTVIMYADETTDAMRKAIDETDRRRVRQIAYNKEHGIDPKPLIKKISDVNDMLAKED 609

Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771
                           A  T++ + +   + + K+ +  LK+             L +QM
Sbjct: 610 VDTATLLEGGYRNAGKAGNTHLGVPSLDAAEADKRHEEILKAGLPAQDLADLIRQLSEQM 669

Query: 772 HLAADNLNFEEAARIRDEIKRLK 794
           H AA+ L FE AAR+RDEI+ LK
Sbjct: 670 HTAAEQLQFELAARLRDEIRDLK 692


>gi|328949674|ref|YP_004367009.1| UvrABC system protein B [Marinithermus hydrothermalis DSM 14884]
 gi|328449998|gb|AEB10899.1| UvrABC system protein B [Marinithermus hydrothermalis DSM 14884]
          Length = 667

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/647 (52%), Positives = 460/647 (71%), Gaps = 9/647 (1%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P GDQP AI  L++G+    +   LLG TG+GKT TMAKVIEAM RPA+V+APNK+LAAQ
Sbjct: 9   PKGDQPEAIRALVEGLTDGARFLTLLGATGTGKTVTMAKVIEAMARPALVLAPNKVLAAQ 68

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L +EF+  FP NAVEYF+SYYDYYQPEAYVP  D YIEK+++IN +I+R+RHS TRSLL 
Sbjct: 69  LVAEFRELFPENAVEYFISYYDYYQPEAYVPGRDLYIEKDAAINPEIERLRHSTTRSLLT 128

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           R D IVV+SVS IYG+G+ E Y  M + ++ G +  ++ L+  +V+  Y+R ++ +  G 
Sbjct: 129 RRDVIVVASVSAIYGLGNPEDYRAMHLVVEAGATYPREALIERMVELFYERNEVELQPGR 188

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           FR  G+++E++P++ +    R+ ++G++I+ IS  +P+TG++++ +    +Y  +HY TP
Sbjct: 189 FRAKGETLEVWPAY-DTEPVRIELWGDEIDRISVVHPVTGERLKELPGFVLYPATHYATP 247

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
              L  A++ I++EL+ RL ELE +G+LLEAQRL++R  YDLEML   G C+ IENY+R+
Sbjct: 248 EARLAPAIRAIEQELEERLKELEAQGKLLEAQRLKERTLYDLEMLRLMGHCKGIENYARH 307

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
           L+GR PGEPP TL +Y PED L F+DESHV++PQ+ GMY GD+ RK  L EYGFRLPS +
Sbjct: 308 LSGRAPGEPPYTLLDYFPEDFLTFIDESHVSVPQLRGMYNGDYQRKRILVEYGFRLPSAL 367

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           DNRPLRFEE+       + VSATPG +ELE    + VEQIIRPTGL+DP V ++    Q+
Sbjct: 368 DNRPLRFEEFLERTGQIVFVSATPGPFELEHSDRV-VEQIIRPTGLLDPKVTVKPTEGQI 426

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           ED+   +   A +G R+L+TVLTKRMAEDLT YL E  +R RYMH E+   ER  +IRDL
Sbjct: 427 EDLIGAVRERAARGERVLVTVLTKRMAEDLTAYLTEHGVRARYMHHELDAFERQALIRDL 486

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           RLG FDVLVGINLLREGLDIPE  LVAILDADK GFLRS+ SLIQTIGRAARN   +V L
Sbjct: 487 RLGHFDVLVGINLLREGLDIPEVSLVAILDADKTGFLRSERSLIQTIGRAARNAAGEVFL 546

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           YAD I+++++ AI+ET RRR KQ  +NK H I PQ++++ +  ++ P    +A    +  
Sbjct: 547 YADQISEAMRAAIEETRRRRAKQEAYNKAHGITPQTIRKAVRAIVKPEDFGEAVLEAVGE 606

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           D + L       K  + +L  +M  A++ L+FE AA +RD I+ L++
Sbjct: 607 DPEDL-------KEQIAALELEMWRASEALDFERAAELRDRIRALEA 646


>gi|229817850|ref|ZP_04448132.1| hypothetical protein BIFANG_03136 [Bifidobacterium angulatum DSM
           20098]
 gi|229784750|gb|EEP20864.1| hypothetical protein BIFANG_03136 [Bifidobacterium angulatum DSM
           20098]
          Length = 703

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/683 (51%), Positives = 469/683 (68%), Gaps = 31/683 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 12  FVVKSPYKPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 72  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ L  GD +E+ +LL + V  QYKR 
Sbjct: 132 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLHEGDQIERDDLLRTFVDMQYKRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I +   + I+
Sbjct: 192 DIAFTRGIFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIAHESEVHIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+K I+ EL  R+ EL+K+G+ LEAQRL  R TYDLEML   G C 
Sbjct: 251 PASHYVAGPERMARALKSIRAELDDRVAELKKQGKDLEAQRLSMRTTYDLEMLTQVGVCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 311 GVENYSRHFDGRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G+ VEQIIRPTGLVDP +E
Sbjct: 371 GFRLPSAMDNRPLKWPEFQRRIGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLVDPKIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  R L+T LTK+MAEDLT+YL E  I+V Y+HS+V TL 
Sbjct: 430 VRPIEGQIDDLLGEIKARVARNERALVTTLTKKMAEDLTDYLLEHGIKVEYLHSDVDTLR 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  V++YAD IT+++  AIDET RRR+ Q+ +NK+H I+P+ + +KI +V D +  ED
Sbjct: 550 NVDGTVLMYADNITEAMHEAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDVNDMLAKED 609

Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771
                           A  T++S+       + K+ +  LK+             L +QM
Sbjct: 610 VDTQTLLEGGYRNAGKAGNTHLSVPTLDEDEANKRHEEILKAGLPAQDLADLIRQLSEQM 669

Query: 772 HLAADNLNFEEAARIRDEIKRLK 794
           H AA+ L FE AAR+RDEI+ LK
Sbjct: 670 HTAAEQLQFELAARLRDEIRDLK 692


>gi|332299257|ref|YP_004441178.1| UvrABC system protein B [Porphyromonas asaccharolytica DSM 20707]
 gi|332176320|gb|AEE12010.1| UvrABC system protein B [Porphyromonas asaccharolytica DSM 20707]
          Length = 677

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/671 (51%), Positives = 457/671 (68%), Gaps = 19/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI+ ++RP +V++
Sbjct: 3   FQLTSKYKPTGDQPEAIAQLSQGVRDGLPHQTLLGVTGSGKTFTIANVIQQVERPTLVIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+  TDTYIEK+ +IN ++D++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLINTDTYIEKDMAINAELDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVV+SVSCIYG+ +   +   I++L++G  +E+  L+  L +  Y  
Sbjct: 123 RATASLLSGRRDVIVVASVSCIYGMANPNDFENKIIKLEVGMQIERDALMRRLAESYYVN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
                + G+FRV GD+I+IFP+    E VA+R+ ++ ++I+ I+   P++ +    ++++
Sbjct: 183 NKADFVSGSFRVKGDTIDIFPAIESFEGVAYRIELWDDEIDRITIIDPVSAESQGTLDSL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           +IY  + +VT       A+  IK++L  R  ELE+EG L EA+RL +R++YDLEM++  G
Sbjct: 243 RIYPANLFVTTEEQTQRAIVEIKKDLADRTAELEREGHLFEAKRLYERVSYDLEMIKAVG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR PGE P  L +Y P+D LL +DESHV+IPQI  MY GD  RK TL
Sbjct: 303 YCSGIENYSRYFDGRKPGERPFCLMDYFPDDYLLVIDESHVSIPQIRAMYGGDKARKTTL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP+ +DNRPL FEE+  L    I VSATP  +EL   +G++VEQ+IRPTGL+DP
Sbjct: 363 VEYGFRLPAALDNRPLEFEEFVNLTNQVIYVSATPADYELNMSEGVVVEQVIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+EIR    QV+D+ +EI +  ++  R L+T LTKRMAE+L++YL    I+  Y+HS+V 
Sbjct: 423 PIEIRPTEHQVDDLMEEIVIRTERNERTLVTTLTKRMAEELSDYLIRAGIKCAYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERI+I+  LR G +DVLVG+NLLREGLD PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERIQIMDSLREGAYDVLVGVNLLREGLDFPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+  VI YAD+IT S+Q  IDET RRR KQ+ +N+ HNI P  V  K    +    
Sbjct: 543 AARNVHGLVIFYADSITDSMQATIDETNRRRAKQIAYNEAHNITPTQVVSKRTNALSQ-- 600

Query: 738 LEDAATTNISIDAQQLS-------------LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
            E   TT  S  A+                L++ K    ++ +RKQM+ AA  LNF EAA
Sbjct: 601 -EGYVTTKSSAQAEAYVEEEIAVASPVAEYLTQDKLPDLIEQVRKQMYAAAKELNFVEAA 659

Query: 785 RIRDEIKRLKS 795
           R+RDE+  L+S
Sbjct: 660 RLRDEMYALQS 670


>gi|254411502|ref|ZP_05025279.1| excinuclease ABC, B subunit [Microcoleus chthonoplastes PCC 7420]
 gi|196182003|gb|EDX76990.1| excinuclease ABC, B subunit [Microcoleus chthonoplastes PCC 7420]
          Length = 665

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/659 (52%), Positives = 452/659 (68%), Gaps = 8/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q  +   GDQP AI++L   + +  + Q LLG TG+GKT+T+AKVIE   +P +V+A
Sbjct: 4   FDLQAPFEAKGDQPQAISRLTTSLQAGNRFQTLLGATGTGKTYTVAKVIEQTGKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E ++FFP NAVEYFVSYYDYYQPEAY+P +DTYIEK ++IN++ID +RH
Sbjct: 64  HNKTLAAQLCNELRDFFPQNAVEYFVSYYDYYQPEAYIPVSDTYIEKSAAINDEIDMLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  + L++G  ++Q++LL  L   QY R 
Sbjct: 124 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAIPLRVGTELDQRQLLRDLASVQYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG  ++++  + IY
Sbjct: 184 DIEMGRGRFRVKGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYVDPVTGGILQSLNALNIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP   L  A + I+ EL  ++ +L++ G+LLEAQRL+QR  YDLE+L   G C 
Sbjct: 243 PARHFVTPDDRLEEACEAIEAELHQQIAQLQEAGKLLEAQRLDQRTRYDLELLREVGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L GR  GEPP  L +Y P+D LL VDESHVT+PQI GMY GD  RK  L ++
Sbjct: 303 GVENYSRHLAGRMAGEPPECLIDYFPQDWLLVVDESHVTVPQIRGMYNGDQARKRVLIDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRL S  DNRPL+ EE+       I VSATPG WE+EQ Q  +VEQ+IRPTG+VDP + 
Sbjct: 363 GFRLLSAADNRPLKAEEFWTKVNQCIFVSATPGDWEIEQSQEQVVEQVIRPTGVVDPEIF 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI   A +  R+L+T LTKRMAEDLTEYL ER IRVRY+HSE+ ++E
Sbjct: 423 VRPTEGQVDDLLAEIQERASKKERVLVTTLTKRMAEDLTEYLQERGIRVRYLHSEINSIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI++ LR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR+  SLIQTIGRAAR
Sbjct: 483 RIEILQSLREGAFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAARSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           +V  + ILYAD +T S+  AIDET RRR  QL +N+ H I PQ + +K    I   L   
Sbjct: 543 HVRGQAILYADNLTDSMAKAIDETERRRGIQLAYNRMHGITPQPIVKKSSNAILAFLDVS 602

Query: 738 --LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L       +   A+ L L +      +  L  QM  AA NL FE+AA+ RD+IK L+
Sbjct: 603 RRLNHQQLATVYEQAEDLPLEQI--PEVISQLETQMKEAAKNLEFEQAAQYRDKIKHLR 659


>gi|270307809|ref|YP_003329867.1| excinuclease ABC, B subunit [Dehalococcoides sp. VS]
 gi|270153701|gb|ACZ61539.1| excinuclease ABC, B subunit [Dehalococcoides sp. VS]
          Length = 668

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/657 (51%), Positives = 465/657 (70%), Gaps = 6/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+  +GDQP A+ +L +G+      Q LLGVTGSGKTFTMA VI  + RP ++++
Sbjct: 4   FKIVSDFALTGDQPQAVEKLSEGLAHGLTDQTLLGVTGSGKTFTMANVIARVNRPTLIIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K F P N+VEYFVSYYDYYQPEAYVP+ D YIEK++ INE+ID++RH
Sbjct: 64  HNKTLAAQLYSEMKEFLPENSVEYFVSYYDYYQPEAYVPQKDMYIEKDADINEEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATR+L ER D ++V+SVSCIYG+G  E Y   ++ LK G S+ +  LL  LV  QY+R 
Sbjct: 124 AATRALFERRDVVIVASVSCIYGLGEPEEYRSFVLPLKKGQSLRRDLLLRRLVDMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FR+ GD++EI P++ E++A RV  FG++IE I    P++G+ + +++ I IY
Sbjct: 184 DIDFSRGKFRLRGDTLEIQPAY-EELALRVEFFGDEIERIVSLDPVSGELLADIDEINIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT    +  A+K I+ EL+ RL ELE EG++LE  RL+QR  YDLEM++  G C 
Sbjct: 243 PAKHFVTSAEKMAEAIKGIQAELEDRLKELEAEGKMLETARLKQRTNYDLEMMQQAGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L GR  G  P TL +Y PED LL VDESH+++PQI GMY GD  RK TL +Y
Sbjct: 303 GVENYSRHLAGRKAGSAPWTLLDYFPEDFLLIVDESHMSLPQIRGMYAGDAARKKTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL F+E+      +I VSATPG +E E  Q  +VEQ++RPTGL++P + 
Sbjct: 363 GFRLPSAMDNRPLSFDEFKARVKQSIYVSATPGPYEKEHSQQ-VVEQLVRPTGLLEPVIT 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ +E+     +  R+L+T LTK+M+E L +YL E  I+  Y+HSEV TLE
Sbjct: 422 VKPTGGQIDDLLEEVKKRVDKKERVLITTLTKKMSEKLADYLVEMGIKTHYLHSEVDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS+ +LIQT+GRAAR
Sbjct: 482 RVEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V+ +VI+YAD IT S+Q A+DE +RRR+ Q ++N+ HNI PQ +++ I ++ + I    
Sbjct: 542 HVDGQVIMYADKITGSMQRAMDEISRRRKIQEDYNRLHNITPQGIRKAIKDINERI---R 598

Query: 741 AATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + T  +S    + + + ++    L K L  QM  AA NL FE AA IRD +  L+++
Sbjct: 599 SVTAEVSGPEFRPAPTLREDIVRLIKELESQMKKAAKNLEFERAALIRDRVVELRAA 655


>gi|157736872|ref|YP_001489555.1| excinuclease ABC subunit B [Arcobacter butzleri RM4018]
 gi|157698726|gb|ABV66886.1| excinuclease ABC, subunit B [Arcobacter butzleri RM4018]
          Length = 657

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/657 (53%), Positives = 464/657 (70%), Gaps = 8/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY PSGDQP AI  L   I +  +   LLGVTGSGKT+T+AKVIE +Q+P ++M 
Sbjct: 4   FKVVSDYEPSGDQPKAIEALSSSIKAGNQYNTLLGVTGSGKTYTIAKVIEKVQKPTLIMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+N VEYF+SYYDYYQPEAY+PR+D +IEK+SSIN++++R+R 
Sbjct: 64  HNKTLAAQLYSEFKQFFPNNHVEYFISYYDYYQPEAYIPRSDLFIEKDSSINDELERLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL  +D IV++SVS  YG+G+   Y  M+ ++++G +  QKE L  L++  YKR 
Sbjct: 124 SATASLLSFDDVIVIASVSANYGLGNPSEYKAMVQRVEVGFNYSQKEFLLKLIEMGYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD I+IFP++ ED   RV  FG+++E I++   +T  K +++  + IY
Sbjct: 184 DKFFDRADFRVNGDVIDIFPAYFEDEFIRVEFFGDEVESITKHEYITNTKTKDLNEVIIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           + + +V  +  L  A+K I+EEL+ RL   +KE +L+E QRL+QR+ +DLEM+E TG C+
Sbjct: 244 SVNPFVVTQENLGRAVKEIEEELERRLDFFQKEQKLVEYQRLKQRVEFDLEMIEGTGMCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTL---FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENY+R+LTG+  GE P +L   FE + ED LL VDESHV++PQ  GM+  D  RK  L
Sbjct: 304 GIENYARHLTGQKAGETPYSLLDYFEQMDEDFLLVVDESHVSLPQFRGMHAADRSRKEVL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL+F+E+    P  + VSATP   ELE    ++ EQIIRPTGL+DP
Sbjct: 364 VEYGFRLPSALDNRPLKFDEFINKAPHYVFVSATPNELELEMS-SVVAEQIIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            ++I  +  QVE ++DEI     +  R+L+TVLTK+MAE+L  Y  +  I+V+YMHSE+ 
Sbjct: 423 IIDIIDSEFQVEKLHDEIKKVIAKNERVLVTVLTKKMAEELASYYADLGIKVKYMHSEID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER +IIR+LRLG FDVL+GINLLREGLDIPE  LVAILDADKEGFLRSKTSLIQTIGR
Sbjct: 483 AIERNQIIRELRLGTFDVLIGINLLREGLDIPETSLVAILDADKEGFLRSKTSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N +VIL+A  IT S+Q AIDET RRR+ Q E NK+HNI P+S K K+ E +    
Sbjct: 543 AARNENGRVILFAKRITASMQFAIDETNRRRKLQEEFNKEHNITPKSTKRKLDENLKLEE 602

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +D A     ++    S  KK     L  L KQM  AA +LNFEEA R+RDEI ++K
Sbjct: 603 YDDVAWKKQKLEKMPASERKK----ILIELNKQMKKAASDLNFEEAIRLRDEIAKIK 655


>gi|313887287|ref|ZP_07820978.1| excinuclease ABC, B subunit [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923206|gb|EFR34024.1| excinuclease ABC, B subunit [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 677

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/671 (51%), Positives = 460/671 (68%), Gaps = 19/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI+ ++RP +V++
Sbjct: 3   FQLTSKYKPTGDQPEAIAQLSQGVRDGLPHQTLLGVTGSGKTFTIANVIQQVERPTLVIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+  TDTYIEK+ +IN ++D++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLINTDTYIEKDMAINAELDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVV+SVSCIYG+ +   +   I++L++G  +E+  L+  L +  Y  
Sbjct: 123 RATASLLSGRRDVIVVASVSCIYGMANPNDFENKIIKLEVGMQIERDALMRRLAESYYVN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
                + G+FRV GD+I+IFP+    E VA+R+ ++ ++I+ I+   P++ +    ++++
Sbjct: 183 NKADFVSGSFRVKGDTIDIFPAIESFEGVAYRIELWDDEIDRITIIDPVSAESQGTLDSL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           +IY  + +VT       A+  IK++L  R  ELE+EG L EA+RL +R++YDLEM++  G
Sbjct: 243 RIYPANLFVTTEEQTQRAIVEIKKDLGDRTAELEREGHLFEAKRLYERVSYDLEMIKAVG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR PGE P  L +Y P+D LL +DESHV+IPQI  MY GD  RK TL
Sbjct: 303 YCSGIENYSRYFDGRKPGERPFCLMDYFPDDYLLVIDESHVSIPQIRAMYGGDKARKTTL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP+ +DNRPL FEE+  L    I VSATP  +EL   +G++VEQ+IRPTGL+DP
Sbjct: 363 VEYGFRLPAALDNRPLEFEEFVNLTNQVIYVSATPADYELNMSEGVVVEQVIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+EIR    QV+D+ +EI +  ++  R L+T LTKRMAE+L++YL    I+  Y+HS+V 
Sbjct: 423 PIEIRPTEHQVDDLMEEIVIRTERNERTLVTTLTKRMAEELSDYLIRAGIKCAYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERI+I+  LR G +DVLVG+NLLREGLD PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERIQIMDSLREGAYDVLVGVNLLREGLDFPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+  VI YAD+IT S+Q  IDET RRR KQ+ +N+ HNI P  V  K    +    
Sbjct: 543 AARNVHGLVIFYADSITDSMQATIDETNRRRAKQIAYNEAHNITPTQVVSKRTNALSQ-- 600

Query: 738 LEDAATTNISIDAQ-----QLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
            E   TT  S  A+     Q++        L++ K    ++ +RKQM+ AA  LNF EAA
Sbjct: 601 -EGYVTTKSSAQAEAYVEDQIAVASPVAEYLTQDKLPDLIEQVRKQMYAAAKELNFVEAA 659

Query: 785 RIRDEIKRLKS 795
           R+RDE+  L+S
Sbjct: 660 RLRDEMYALQS 670


>gi|261367038|ref|ZP_05979921.1| excinuclease ABC subunit B [Subdoligranulum variabile DSM 15176]
 gi|282571156|gb|EFB76691.1| excinuclease ABC subunit B [Subdoligranulum variabile DSM 15176]
          Length = 679

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/654 (51%), Positives = 455/654 (69%), Gaps = 7/654 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++  + P+GDQP AI  L++GI   +  Q LLGVTGSGKTFTMA +I    RP +++ 
Sbjct: 5   FHLKAPFQPTGDQPQAIEALVQGIEEGDDAQTLLGVTGSGKTFTMANIIARCNRPTLILE 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LA+Q+ +E ++FFP +AVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++IDR+RH
Sbjct: 65  PNKTLASQICTEMRSFFPDDAVEYFVSYYDYYQPEAYIPSTDTYIEKDSAINDEIDRLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L E+ + I+V+SVSCIY +G    Y  M++ L+ G  +E+ EL + LVK QY+R 
Sbjct: 125 SATAALSEQRNVIIVASVSCIYSLGDPIDYRSMVISLRPGMQMERDELCNRLVKLQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  IR  FRV GD+++I  ++ ++ A RV  FG++I+ I EF PLTGQ    V  + I+
Sbjct: 185 DMNFIRNKFRVKGDTVDIHLAYNDEYAIRVEFFGDEIDRIIEFDPLTGQHKNVVRHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+     +   +  I  E++ ++ +  +EG+LLEAQR++QR  YD+EML+  G C+
Sbjct: 245 PASHYIVGPEKMKEGLAKIALEMEEQVKKFTEEGKLLEAQRIQQRTNYDMEMLQEVGMCK 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  L+GR PG  P TL +Y P+D LL VDESHV +PQI GMY GD+ RK TL EY
Sbjct: 305 GIENYSAVLSGRAPGSTPTTLLDYFPDDFLLMVDESHVMLPQIRGMYGGDYSRKKTLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRFEE+       I VSATPG +E  Q    + EQ+IRPTGL+DP + 
Sbjct: 365 GFRLPSAFDNRPLRFEEFEKKVHQKIFVSATPGEYE-RQHSSRVAEQVIRPTGLLDPLIM 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q+ED+  EI     +G R L+T LT +MAEDLT+YL E  ++ +YMH EV T E
Sbjct: 424 VRPVEGQIEDLLGEIRQRIDRGERALVTTLTVKMAEDLTDYLEEHGVKTKYMHHEVDTFE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII+DLR+G  DV+VGINLLREGLD+PE  L+AILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 484 RMEIIKDLRVGAIDVIVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  V++YAD +T S++ AI ET RRR  Q  +N++H I P+++ + I + ++  + E+
Sbjct: 544 NANGVVLMYADEVTPSMERAIMETERRRAIQDAYNQEHGITPKTIVKAIGDGLEISMSEE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                     +Q  +S+ + +  ++ + K+M  AA  L FE AA++RDEI RL+
Sbjct: 604 NKRM------RQHRMSRAERQQTIERMTKEMKEAARLLQFELAAQLRDEIARLE 651


>gi|154487489|ref|ZP_02028896.1| hypothetical protein BIFADO_01344 [Bifidobacterium adolescentis
           L2-32]
 gi|154084007|gb|EDN83052.1| hypothetical protein BIFADO_01344 [Bifidobacterium adolescentis
           L2-32]
          Length = 703

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/685 (51%), Positives = 468/685 (68%), Gaps = 35/685 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 12  FVVKSPYKPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 72  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ L+ G  +++ +LL   V  QYKR 
Sbjct: 132 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLQEGQQIDRDDLLRKFVDMQYKRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I +   + I+
Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIAHESQVHIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+K I++EL  R  EL K+G+ LEAQRL  R TYDLEML   G+C 
Sbjct: 251 PASHYVAGPERMERALKTIQQELDERTAELHKQGKELEAQRLTMRTTYDLEMLSQVGTCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  R+ TL E+
Sbjct: 311 GVENYSRHFDGRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRERTLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G+ VEQIIRPTGLVDP ++
Sbjct: 371 GFRLPSAMDNRPLKWPEFQERVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLVDPQID 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL 
Sbjct: 430 VRPVEGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  V++YAD IT++++ AIDET RRR+ Q+ +NK+H I+P+ + +KI +V D +  ED
Sbjct: 550 NVSGTVVMYADDITEAMRKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDVNDMLAKED 609

Query: 741 AATTNISIDAQQLSLSKKKGKAHL-------------------------------KSLRK 769
             T  +         + K G +HL                               + L +
Sbjct: 610 VDTQTLL--GTGYRNADKAGNSHLGVPHTSKEESGRRHEEILKAGLPAQDLADLIRQLSE 667

Query: 770 QMHLAADNLNFEEAARIRDEIKRLK 794
           QMH AA+ L FE AAR+RDEI+ LK
Sbjct: 668 QMHTAAEQLQFELAARLRDEIRDLK 692


>gi|320332650|ref|YP_004169361.1| UvrABC system protein B [Deinococcus maricopensis DSM 21211]
 gi|319753939|gb|ADV65696.1| UvrABC system protein B [Deinococcus maricopensis DSM 21211]
          Length = 671

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/656 (51%), Positives = 457/656 (69%), Gaps = 8/656 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
             ++Q+++ PSGDQP AI  L+ G+ S  + Q LLG TG+GKT++MAKVIE   RPA++M
Sbjct: 1   MLRVQSEFTPSGDQPTAIRSLVDGLESGLRYQTLLGATGTGKTYSMAKVIEETGRPALIM 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNKIL AQL SEF+ FFP  AVE+FVSYYDYYQPEAYVP  D +I+K+++IN++++R+R
Sbjct: 61  APNKILTAQLASEFREFFPGAAVEFFVSYYDYYQPEAYVPGKDLFIDKDANINQELERLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HS TRSLL R D IVV+SVSCIYG+G  E Y  + + LK+G  + +  +L  LV+ QY R
Sbjct: 121 HSTTRSLLTRRDTIVVASVSCIYGLGDPEEYRALNLVLKVGQPIGRDAILDRLVELQYDR 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI +  G FR  GD IEI+PS+ E    R+ ++G+D++ I  ++P++G     ++   +
Sbjct: 181 NDIELAPGRFRAKGDVIEIWPSYDEQ-PLRLELWGDDLDRIVLYHPVSGDVQAELDATVV 239

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y   HYV+    +  A+  I++EL  R+   +  G+LLEAQR+++R  YDLEML+  G C
Sbjct: 240 YPAKHYVSSAGNIERAIVTIQQELDERVEYFKASGKLLEAQRIKERTLYDLEMLKVLGYC 299

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR++ GR PGE P T+ +Y   D + FVDESHVTIPQ+ GM  GD  RK TL +
Sbjct: 300 SGIENYSRHIDGRKPGETPYTMLDYFASDFVTFVDESHVTIPQVGGMSNGDRARKQTLVD 359

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS MDNRPL F E+      T+ VSATPG +E E    I  +QIIRPTGLVDP V
Sbjct: 360 YGFRLPSAMDNRPLNFGEFLGKIGQTVFVSATPGPFEREHSDSI-ADQIIRPTGLVDPVV 418

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R  + QVED+   +   A +G R L+T LTKRMAEDL EYL ++ +R RYMHS++ T+
Sbjct: 419 QLRPIKGQVEDILGRVRERAAKGERTLVTTLTKRMAEDLAEYLLDKGVRARYMHSDIDTV 478

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  IIRDLRLG +DVL+GINLLREGLD+PE  LVAILDADK GFLRS+ SLIQTIGRAA
Sbjct: 479 ERQVIIRDLRLGHYDVLIGINLLREGLDLPEVSLVAILDADKPGFLRSERSLIQTIGRAA 538

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN +VILY D+IT ++Q A++ET RRREKQL +N +H I P ++++ + +VI     E
Sbjct: 539 RNVNGEVILYGDSITPAMQAAMEETARRREKQLAYNAEHGITPTTIRKGVRDVIRG---E 595

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + A    S D   L   +      L  L   M  A+++L+FE+AA +RD+I+ +++
Sbjct: 596 EEAELPQSPD---LGNDRDALMTQLTDLELDMWRASEDLDFEKAASLRDQIRAIEA 648


>gi|159901478|ref|YP_001547725.1| excinuclease ABC subunit B [Herpetosiphon aurantiacus ATCC 23779]
 gi|238687090|sp|A9B464|UVRB_HERA2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|159894517|gb|ABX07597.1| excinuclease ABC, B subunit [Herpetosiphon aurantiacus ATCC 23779]
          Length = 698

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/656 (50%), Positives = 465/656 (70%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++   Y P GDQP AIAQL+ G++S    Q LLG TG+GKT T+A+VIE +QRP +VMA
Sbjct: 4   LKVHAPYEPRGDQPQAIAQLVNGLNSGLVHQTLLGATGTGKTHTIARVIEQVQRPTLVMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK FFP NAV YFVSYYD Y PEAYVP  D YIEKE+ INE+IDR+RH
Sbjct: 64  HNKTLAAQLYAEFKEFFPENAVGYFVSYYDAYTPEAYVPSKDLYIEKEAQINEEIDRLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT++L  R+D I+V+SVS IYG+GS   Y Q+ ++LK G+   + ++L +L+  Q++R 
Sbjct: 124 EATQALFTRSDVIIVASVSAIYGLGSPTDYGQVALKLKTGEIRNRDKVLRTLIDLQFERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EIFP++ E  A+R+ M+G++IE + E  PLTG+ +   + I+++
Sbjct: 184 DLDFHRGTFRVRGDTLEIFPANAES-AFRIEMWGDEIERMVEVDPLTGEILTQKDHIEVF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++     +  A+  I+ EL+ +L  LE EG++LEA RL+QR  YDLE++E  G C 
Sbjct: 243 PAKHFIPNADKMQAAIGDIRLELEQQLAHLEGEGKVLEAARLKQRTLYDLEIMEELGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++  R+ G+ P TL +Y P+D LL +DESH+++PQI GM+ GD  RK TL ++
Sbjct: 303 GIENYSRHMDRRSEGQTPWTLLDYFPDDFLLVIDESHISVPQIRGMFNGDRSRKQTLVDF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E++      I VSATPG +E +  +  +VEQIIRPTGL+DP VE
Sbjct: 363 GFRLPSALDNRPLMFDEFSKHVHQAIYVSATPGVYEYQHHEQ-VVEQIIRPTGLLDPMVE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+  EI      G R+L+T LTKRMAEDLT+YL E  +R +Y+HS+V T+E
Sbjct: 422 VRRTRGQIDDLLGEIKRRVDTGSRVLVTTLTKRMAEDLTDYLKEMGVRTQYLHSDVDTIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI+I+RDLRLG FDVLVGINLLREGLD+PE  LVAILDADK GFLRS++SL+Q IGRAAR
Sbjct: 482 RIDILRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKAGFLRSESSLVQIIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +++  V++YADTIT ++  AI ET RRR+ Q  +N++H I P+ + + + ++ + +    
Sbjct: 542 HIDGTVLMYADTITPAMDYAISETRRRRQIQERYNQQHGIEPKGIVKAVRDLTEGMKKVA 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                    A   S++K++    + +L KQM  AA +L FE+AA +RD++  ++ +
Sbjct: 602 EKPAAYQTAANPDSMTKEELFKVINALEKQMKQAAKDLEFEKAALLRDQLTEMRQT 657


>gi|183601487|ref|ZP_02962857.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683971|ref|YP_002470354.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191013|ref|YP_002968407.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196419|ref|YP_002969974.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219093|gb|EDT89734.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621621|gb|ACL29778.1| excinuclease ABC, B subunit [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249405|gb|ACS46345.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250973|gb|ACS47912.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295794002|gb|ADG33537.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 703

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/690 (51%), Positives = 467/690 (67%), Gaps = 45/690 (6%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 12  FVVKSPYQPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 72  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ L  GD +++ +LL + V  QYKR 
Sbjct: 132 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLHEGDQIDRDDLLRTFVDMQYKRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I  V  + I+
Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIEQVSDVHIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I+ EL  R+ EL K+G+ LEAQRL  R TYDLEML   G C 
Sbjct: 251 PASHYVAGPERMAKALDSIQRELDERVAELRKQGKELEAQRLSMRTTYDLEMLSQVGVCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR  G PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 311 GVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G+ VEQIIRPTGL+DP +E
Sbjct: 371 GFRLPSAMDNRPLKWPEFLDRVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLLDPKIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI      G R L+T +TK+MAEDLT+YL ER I+V Y+HS+V TL 
Sbjct: 430 VRPVEGQIDDLLAEIKDRVAAGERTLVTTMTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD +T S+  AI+ET RRRE Q+ +N++H+I+P+ + +KI +V D +  ED
Sbjct: 550 NVSGTVIMYADEMTDSMSKAIEETNRRREIQMAYNEEHHIDPKPLIKKISDVNDMLAKED 609

Query: 741 AATTNISIDAQQL-----SLSKKKGKAHL------------------------------- 764
                  +D Q+L       S K G +HL                               
Sbjct: 610 -------VDTQELLEGGYRNSGKAGNSHLGLPNTTPEEADRRHEEILKAGLPAQDLADLI 662

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + L  QMH AA+ L FE AAR+RDEI+ LK
Sbjct: 663 RQLSDQMHTAAEQLQFELAARLRDEIRDLK 692


>gi|307720472|ref|YP_003891612.1| Excinuclease ABC subunit B [Sulfurimonas autotrophica DSM 16294]
 gi|306978565|gb|ADN08600.1| Excinuclease ABC subunit B [Sulfurimonas autotrophica DSM 16294]
          Length = 660

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/657 (52%), Positives = 457/657 (69%), Gaps = 8/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  L   I    + Q L GVTGSGKT TMA+VIE ++ P I+M 
Sbjct: 7   FEVVSPYQPAGDQPKAIELLTDSILKGNRYQTLEGVTGSGKTHTMARVIENVKMPTIIMT 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEF+ FFP+N VEYFVSYYDYYQPEAY+PR D +IEK+S+IN++++R+R 
Sbjct: 67  HNKTLAAQLYSEFRQFFPNNHVEYFVSYYDYYQPEAYIPRQDLFIEKDSAINDELERLRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL  +D IV++SVS  YG+G  E Y  M+  L +GD + QK+LL  LV+  Y R 
Sbjct: 127 SATANLLSYDDVIVIASVSANYGLGDPEEYQNMVQSLAVGDEIAQKKLLLRLVEMGYSRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D     G  RV G+SI+I+P + E  A RV  FG++IE I  F  +  +K+   +++ IY
Sbjct: 187 DTYFDSGHIRVNGESIDIYPPYFEQEAIRVEFFGDEIEAIYTFDVIDNKKLEEHKSVTIY 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A S +   +  ++ A+K I+EEL  RL   +KEG+LLE QRL+QR+ +DLEML+TTG C+
Sbjct: 247 ATSQFSVSQEKMSVAIKRIEEELDERLAYFQKEGKLLEYQRLKQRVEFDLEMLQTTGMCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDS---LLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENYSR LT + PGE P TL +Y  ++    L+ VDESHV++PQ  GMY GD  RK  L
Sbjct: 307 GIENYSRLLTNKKPGEAPFTLLDYFEQNHKEYLVIVDESHVSLPQYRGMYAGDRARKEVL 366

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL+ +E+    P  + VSATP  +ELE       EQIIRPTGL+DP
Sbjct: 367 VDYGFRLPSALDNRPLKADEYINKAPHYLFVSATPAEYELEMSVA-KAEQIIRPTGLLDP 425

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EI+ +  QVED++DEI     +  R+L+TVLTK+MAE LT+YL +  I+V+YMHS++ 
Sbjct: 426 VIEIKPSDNQVEDIHDEIKKTVVKDERVLITVLTKKMAEALTKYLADLGIKVQYMHSDID 485

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER +IIR LRLG+FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+T+L+QTIGR
Sbjct: 486 TIERNQIIRSLRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSETALVQTIGR 545

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
            ARN N +VILYA+ +T S+Q AID+TT RRE Q  +NK+H I P++ K  + E +    
Sbjct: 546 GARNENGRVILYANKMTGSMQRAIDKTTARREIQEAYNKEHGITPKTTKRTLDENLK--- 602

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           LED          Q   +   + KA +K L  +M  AA  LNFEEAAR+RDEI ++K
Sbjct: 603 LEDHGDIYQKYKKQD-KIPPSERKAMVKELSLKMKQAAKELNFEEAARLRDEITKIK 658


>gi|308186115|ref|YP_003930246.1| UvrABC system protein B [Pantoea vagans C9-1]
 gi|308056625|gb|ADO08797.1| UvrABC system protein B [Pantoea vagans C9-1]
          Length = 613

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/607 (56%), Positives = 435/607 (71%), Gaps = 8/607 (1%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+APNK LAAQLY E K FFP NAVE+FVSYYDYYQPEAYVP +DT+IEK++S+NE I+
Sbjct: 1   MVLAPNKTLAAQLYGEMKEFFPDNAVEFFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 60

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + Q
Sbjct: 61  QMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQ 120

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V  
Sbjct: 121 YTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIDSVVPR 180

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             IY  +HYVTPR  +  AM+ IK EL  R   L +  +LLE QR+ QR  +DLEM+   
Sbjct: 181 FTIYPKTHYVTPRERILQAMEDIKVELADRRRVLLENNKLLEEQRITQRTQFDLEMMSEL 240

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRYL+ R PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK T
Sbjct: 241 GYCSGIENYSRYLSARGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRARKET 300

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRP++FEE+  L P TI VSATPG +ELE+    +V+Q++RPTGL+D
Sbjct: 301 LVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGKYELEKSGDEVVDQVVRPTGLLD 360

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R   TQV+D+  EI+       R+L+TVLTKRMAEDLTEYL E   +VRY+HS++
Sbjct: 361 PIIEVRPVGTQVDDLLSEIHQRVAINERVLVTVLTKRMAEDLTEYLTEHGEKVRYLHSDI 420

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 421 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 480

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--- 733
           RAARN+N K ILY D IT S+  AI+ET RRREKQ  HN+K+ I PQ + +KI +++   
Sbjct: 481 RAARNINGKAILYGDKITPSMARAIEETERRREKQQLHNEKNGIVPQGLNKKITDILELG 540

Query: 734 -DPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            + +     A      +AQ L+    L+ +  +  +  L  QM   A NL FE+AA +RD
Sbjct: 541 KNVVKTRGKAKPARPGEAQALADFQLLTPQALQKKIHELEGQMQQHAQNLEFEQAASVRD 600

Query: 789 EIKRLKS 795
           ++  L++
Sbjct: 601 QLHELRT 607


>gi|257463628|ref|ZP_05628019.1| excinuclease ABC subunit B [Fusobacterium sp. D12]
 gi|317061180|ref|ZP_07925665.1| excinuclease ABC subunit B [Fusobacterium sp. D12]
 gi|313686856|gb|EFS23691.1| excinuclease ABC subunit B [Fusobacterium sp. D12]
          Length = 660

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/658 (51%), Positives = 476/658 (72%), Gaps = 7/658 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++   Y P+GDQP AI +L++ +  + + Q+LLGVTGSGKTFT+A VIE +QRP +++
Sbjct: 1   MFRLCAKYQPTGDQPIAIEKLVESLEKKNRDQVLLGVTGSGKTFTIANVIERVQRPTLII 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+S++NE+ID++R
Sbjct: 61  APNKTLAAQLYQEYKAFFPDNAVEYFVSYYDYYQPEAYIKTTDTYIEKDSAVNEEIDKLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           ++AT +L+ R D I+V+SVS IYG+GS E Y +M + + +   + + +L+  L+  +Y+R
Sbjct: 121 NAATAALIMRKDVIIVASVSAIYGLGSPEIYKKMTIPIDLKTGILRAKLIERLIALRYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIK 378
            D+  IRG+FRV GD I+++PS+LE   +R+  +G+D+E ISE + LTG+KI+ N+E I 
Sbjct: 181 NDMNFIRGSFRVKGDVIDVYPSYLE-TGYRLEFWGDDLEAISEIHTLTGEKIKKNLERIV 239

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IYA + Y+T    L   +  I+E+    + E +K G+LLEAQRL+QR+ YD+EM++  G 
Sbjct: 240 IYAATQYITEEEDLERIISEIREDQTREVKEFQKVGKLLEAQRLQQRVDYDIEMIKEIGY 299

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENY+RYL G+ PGE P TL +Y PE+ LL +DESHV +PQI GMY GD  RK  L 
Sbjct: 300 CKGIENYARYLAGKLPGETPNTLLDYFPENFLLVLDESHVGVPQIRGMYNGDISRKTALV 359

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E GFRL + +DNRPL+FEE+      TI VSATPG +E++Q    IVEQ+IRPTG++DP 
Sbjct: 360 ENGFRLKAALDNRPLQFEEFRERTGQTIYVSATPGDYEIKQAGSAIVEQLIRPTGILDPL 419

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+RS + QV+D+ +EI+    +  R+L+T LTK+MAE+LTEY  E  ++VRYMHS+V T
Sbjct: 420 IEVRSTKGQVDDLLEEIHKRMLKKQRVLVTTLTKKMAEELTEYYEELGVKVRYMHSDVDT 479

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L+RIEII+ LR G+ DVLVGINLLREGLDIPE  LVAIL+ADKEGFLRS+ SLIQTIGRA
Sbjct: 480 LDRIEIIKALRKGEIDVLVGINLLREGLDIPEVSLVAILEADKEGFLRSRRSLIQTIGRA 539

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  KVILY D +T S+ +A++ET RRR  Q  +N  H + P+S+   + E+ + I+ 
Sbjct: 540 ARNIEGKVILYGDVMTDSMTMAMEETERRRGIQENYNLLHGLEPESI---VKEIAEEIIQ 596

Query: 739 EDAATTN--ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            D   +    S  +++   SK++ +  +    K++   +  L+FE+A  +R+E+KRL+
Sbjct: 597 LDYGISKEAFSQKSKKKFHSKEEIEKEIAKCHKKIVKLSKELDFEQAILVREEMKRLQ 654


>gi|224282842|ref|ZP_03646164.1| excinuclease ABC subunit B [Bifidobacterium bifidum NCIMB 41171]
 gi|313140001|ref|ZP_07802194.1| UvrABC system protein B [Bifidobacterium bifidum NCIMB 41171]
 gi|313132511|gb|EFR50128.1| UvrABC system protein B [Bifidobacterium bifidum NCIMB 41171]
          Length = 703

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/683 (51%), Positives = 471/683 (68%), Gaps = 31/683 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 12  FVVKSPYKPSGDQPQAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 72  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ L+ G  +++ +LL   V  QYKR 
Sbjct: 132 QATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLQEGQQIDRDQLLRKFVGMQYKRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I +  ++ I+
Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIDHETSVHIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+K IKEEL  R+ EL+K+G+ LEAQRL  R TYDLEML   G C 
Sbjct: 251 PASHYVAGPERMEHALKTIKEELDQRVAELKKQGKELEAQRLTMRTTYDLEMLTQVGVCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+   R PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 311 GVENYSRHFDNRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G+ VEQIIRPTGLVDP ++
Sbjct: 371 GFRLPSAMDNRPLKWPEFLDRVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLVDPKID 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI     +  R L+T LTK+MAEDL +YL ER I+V Y+HS+V TL 
Sbjct: 430 VRPTKGQIDDLLAEIKDRVDKNERTLVTTLTKKMAEDLADYLLERGIKVEYLHSDVDTLR 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD  T +++ AIDET RRR +Q+ +NK+H I+P+ + +KI +V D +  ED
Sbjct: 550 NVSGTVIMYADETTDAMRKAIDETDRRRVRQIAYNKEHGIDPKPLIKKISDVNDMLAKED 609

Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771
                           A  T++ + +   + + K+ +  LK+             L +QM
Sbjct: 610 VDTATLLEGGYRNAGKAGNTHLGVPSLDAAEADKRHEEILKAGLPAQDLADLIRQLSEQM 669

Query: 772 HLAADNLNFEEAARIRDEIKRLK 794
           H AA+ L FE AAR+RDEI+ LK
Sbjct: 670 HTAAEQLQFELAARLRDEIRDLK 692


>gi|20092137|ref|NP_618212.1| excinuclease ABC subunit B [Methanosarcina acetivorans C2A]
 gi|22257070|sp|Q8TKS3|UVRB_METAC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|19917359|gb|AAM06692.1| excinuclease ABC, subunit B [Methanosarcina acetivorans C2A]
          Length = 670

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/700 (49%), Positives = 470/700 (67%), Gaps = 40/700 (5%)

Query: 99  MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158
           M  S Q    L +    LL + + W             D   F++ + + P G QP AI 
Sbjct: 1   MKVSSQTPGELSKKKFELLHDARYW-------------DSPQFKLISGFEPKGSQPQAIE 47

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +L++G+  RE+ Q LLGVTGSGKT+T+A VI  +++P +V+A NK LAAQLY+EF+ FFP
Sbjct: 48  KLVEGLKKREQFQTLLGVTGSGKTYTVANVINQIRKPTLVIAHNKTLAAQLYNEFREFFP 107

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
            N VEYFVSYYDYYQPE+Y+P  D YIEK++ IN +I++MR +AT SL+ R D IVV+SV
Sbjct: 108 ENRVEYFVSYYDYYQPESYLPAKDQYIEKDAQINPKIEQMRLAATASLMSRQDVIVVASV 167

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           SCIYG+G+ E++ +M  +LK+GD V++KE+L  L+  Q++R D+ ++ G FRV GD+I+I
Sbjct: 168 SCIYGLGNPENFQKMGFELKVGDKVQRKEILEKLIDIQFERNDMELMPGRFRVKGDTIDI 227

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
            P + +D+  RV +FG++++ ISE    TGQ+  +++   +Y   HYV P     +A++ 
Sbjct: 228 IPGYFDDII-RVELFGDEVDRISEVDKQTGQRKEDMDYFFVYPARHYVIPEEEQKSAIRS 286

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           I EEL+  L  L     LLE+ RL+QR  YD+EM+E TGSC+ IENYSR+   R PGE P
Sbjct: 287 ILEELEEHLPTL----GLLESHRLKQRTLYDMEMIEETGSCKGIENYSRHFDHRQPGEQP 342

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
             L +Y PED LL +DESH TIPQ+ GMY GD  RK +L +YGFRLPS  DNRPL+FEE+
Sbjct: 343 FCLLDYFPEDFLLIIDESHQTIPQLHGMYNGDRSRKKSLVDYGFRLPSAYDNRPLKFEEF 402

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
                  I VSATP  +E E     IVEQIIRPTGLVDP VE+R    QV DV  EI   
Sbjct: 403 EKYMENVIFVSATPSDYEREHS-ARIVEQIIRPTGLVDPEVEVRPLEGQVRDVMQEIRKI 461

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             +G R L+T LTK++AE+LTE+L    I+ RY+HS++KT+ER EIIR+LRLGKFDVLVG
Sbjct: 462 VDRGDRALVTTLTKKLAEELTEFLARNEIKARYLHSDIKTIERTEIIRELRLGKFDVLVG 521

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           INLLREGLDIPE G + ILDADKEGFLR   SLIQ IGRAARN +SKV+LYAD +T+SI+
Sbjct: 522 INLLREGLDIPEVGFIGILDADKEGFLRDSKSLIQIIGRAARNSSSKVVLYADNMTESIK 581

Query: 699 LAIDETTRRREKQLEHNKKHNINPQS----VKEKIMEVIDPILLEDAATTNISIDAQQLS 754
            A+DET RRR  Q+ +N++H I P++    ++EK++++ D   +      N+ I+     
Sbjct: 582 KAVDETERRRSMQIAYNEEHGIVPKTIRKPIREKVVDITDTKHIPKTDIPNVIIE----- 636

Query: 755 LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                       L  +M  AAD L+FE A ++R+ IK+L+
Sbjct: 637 ------------LDAEMREAADRLDFERAIQLRELIKKLE 664


>gi|289178755|gb|ADC86001.1| Excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 712

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/690 (51%), Positives = 467/690 (67%), Gaps = 45/690 (6%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 21  FVVKSPYQPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 80

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 81  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 140

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ L  GD +++ +LL + V  QYKR 
Sbjct: 141 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLHEGDQIDRDDLLRTFVDMQYKRN 200

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I  V  + I+
Sbjct: 201 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIEQVSDVHIF 259

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I+ EL  R+ EL K+G+ LEAQRL  R TYDLEML   G C 
Sbjct: 260 PASHYVAGPERMAKALDSIQRELDERVAELRKQGKELEAQRLSMRTTYDLEMLSQVGVCS 319

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR  G PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 320 GVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 379

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G+ VEQIIRPTGL+DP +E
Sbjct: 380 GFRLPSAMDNRPLKWPEFLDRVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLLDPKIE 438

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI      G R L+T +TK+MAEDLT+YL ER I+V Y+HS+V TL 
Sbjct: 439 VRPVEGQIDDLLAEIKDRVAAGERTLVTTMTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 498

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 499 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 558

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD +T S+  AI+ET RRRE Q+ +N++H+I+P+ + +KI +V D +  ED
Sbjct: 559 NVSGTVIMYADEMTDSMSKAIEETNRRREIQMAYNEEHHIDPKPLIKKISDVNDMLAKED 618

Query: 741 AATTNISIDAQQL-----SLSKKKGKAHL------------------------------- 764
                  +D Q+L       S K G +HL                               
Sbjct: 619 -------VDTQELLEGGYRNSGKAGNSHLGLPNTTPEEADRRHEEILKAGLPAQDLADLI 671

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + L  QMH AA+ L FE AAR+RDEI+ LK
Sbjct: 672 RQLSDQMHTAAEQLQFELAARLRDEIRDLK 701


>gi|146299926|ref|YP_001194517.1| excinuclease ABC subunit B [Flavobacterium johnsoniae UW101]
 gi|146154344|gb|ABQ05198.1| excinuclease ABC, B subunit [Flavobacterium johnsoniae UW101]
          Length = 663

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/658 (52%), Positives = 462/658 (70%), Gaps = 5/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P GDQP AI +L +G+   EK Q LLGVTGSGKTFT+A VI+ +QRP +V+A
Sbjct: 3   FQVTSDYSPKGDQPQAIQKLAQGVVDGEKYQTLLGVTGSGKTFTVANVIQEVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEA++P T  +IEK+ SINE++++MR 
Sbjct: 63  HNKTLAAQLYSEFKQFFPNNAVEYFVSYYDYYQPEAFMPVTGVFIEKDLSINEELEKMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D +VV+SVSC+YGIG+   + + ++++     + + +LL SLV+  Y R
Sbjct: 123 STTSSLLSGRRDVLVVASVSCLYGIGNPVEFKKNVIEITRDQVISRTKLLHSLVQSLYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +     GTFR+ GD++EI+PS+ +D A+RV  FG++IEEI  F   T Q I   + + I
Sbjct: 183 TEADFNPGTFRIKGDTVEIYPSYADD-AYRVHFFGDEIEEIESFDAKTSQVIEKFKRLTI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+++L  ++   ++ G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPEVLQGAIWEIQQDLVKQVDYFKEIGKHLEAKRLEERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR  G  P  L +Y P D L+ VDESHVT+ Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGRQAGTRPFCLLDYFPSDYLMVVDESHVTVSQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL++  GI VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQKSDGIYVEQIIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +  +   R+L+T LTKRMAE+L +YL + +IR RY+HSEV TL
Sbjct: 422 EVRPSLNQIDDLIEEIQVRCELDERVLVTTLTKRMAEELAKYLTKVSIRCRYIHSEVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR+  SL QTIGRAA
Sbjct: 482 ERIEIMQDLRKGIFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRNHRSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--DPIL 737
           RN+N K I+YAD IT S+Q  IDET  RR KQ+  N ++NI PQ++ +KI      +P++
Sbjct: 542 RNLNGKAIMYADKITASMQRTIDETNYRRTKQINFNVENNITPQALNKKIDSAFTKNPLV 601

Query: 738 -LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             E   T   + + +   LSK   +  ++  RK M  AA  L+F +AA++RD+IK+L+
Sbjct: 602 EYELGHTLPAAAEPETAYLSKADLEKLIREKRKSMEKAAKELDFMQAAKLRDDIKKLQ 659


>gi|296453877|ref|YP_003661020.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183308|gb|ADH00190.1| excinuclease ABC, B subunit [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 703

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/683 (51%), Positives = 470/683 (68%), Gaps = 31/683 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AIA+L + I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 12  FVVKSPYKPSGDQPQAIAELAERIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 72  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK G  + + +LL   V  QYKR 
Sbjct: 132 QATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKEGQQINRDDLLRRFVAMQYKRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I +   + I+
Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIAHEPQVHIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+K I+EEL  RL EL K+G+ LEAQRL  R TYDLEML   G C 
Sbjct: 251 PASHYVAGPERMERALKTIREELDERLAELRKQGKELEAQRLNMRTTYDLEMLTQVGVCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR  G PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 311 GVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +E+    G +VEQIIRPTGL+DP ++
Sbjct: 371 GFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYEMGLSDG-VVEQIIRPTGLLDPKID 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL 
Sbjct: 430 VRPVKGQIDDLLAEIKARVAKNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD  T++++ AIDET RRR KQ+ +N++H I+P+ + +KI +V D +  ED
Sbjct: 550 NVSGTVIMYADETTEAMRQAIDETDRRRAKQIAYNQEHGIDPKPLIKKISDVNDMLAKED 609

Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771
                           A  T++ +     + + K+ +  LK+             L +QM
Sbjct: 610 VDTQTLLEGGYRNAGKAGNTHLGVPVLDPNEADKRHEEILKAGLPAQDLADLIRQLSEQM 669

Query: 772 HLAADNLNFEEAARIRDEIKRLK 794
           H AA+ L FE AAR+RDEI+ LK
Sbjct: 670 HTAAEQLQFELAARLRDEIRDLK 692


>gi|86133729|ref|ZP_01052311.1| excinuclease ABC, B subunit [Polaribacter sp. MED152]
 gi|85820592|gb|EAQ41739.1| excinuclease ABC, B subunit [Polaribacter sp. MED152]
          Length = 662

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/658 (51%), Positives = 458/658 (69%), Gaps = 5/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++++ P+GDQP AI QL +G+   EK Q LLGVTGSGKTFT+A V++ +++P +++A
Sbjct: 3   FKIKSEFSPTGDQPEAIKQLSEGVKQNEKFQTLLGVTGSGKTFTIANVVKEVKKPTLILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P + TYIEK+ SINE I+R+R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPVSGTYIEKDLSINEDIERLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D +VV+SVSC+YGIG+   + + ++ +++G  + +   L  LV   Y R
Sbjct: 123 STTSSLLSGRRDVLVVASVSCLYGIGNPTEFKKNVIPVRVGQQISRTTFLHQLVTSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +I I  G F+V GD + I+PS+  D  +RV  FG++IEEI  F       I   E + I
Sbjct: 183 TEIEIKSGKFKVKGDVVTIYPSY-GDNGYRVHFFGDEIEEIEAFDLENNTVIEKFEHLTI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+E++  ++   ++ G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANLFVTSPDVLQDAIHQIQEDMVKQVNYFKEIGKPLEAKRLEERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ +DESHVT+PQ   MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVIDESHVTVPQTHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+F+E+  ++  TI VSATP  +EL++ +G+ VEQIIRPTGL+DPP+
Sbjct: 362 YGFRLPAAMDNRPLKFDEFEAIQNQTIFVSATPADYELQKSEGVFVEQIIRPTGLLDPPI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LT+YL   +IR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLIEEIQVRVEKDERTLVTTLTKRMAEELTKYLTRVDIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR+  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRNNKSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN   I+YAD IT S+Q  IDET RRRE Q+ +N KHN  P  + +KI + +    + 
Sbjct: 542 RNVNGLAIMYADKITDSMQKTIDETERRREIQIAYNTKHNRVPTQINKKIEDTLTKSAVS 601

Query: 740 DAATTNISIDA--QQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                N    A  Q+L  L K++ +  ++  RKQM  AA +L+F  AA++RDEI  LK
Sbjct: 602 SFHYDNAITKAAEQELQYLPKEEIQDRIRKKRKQMEAAAKSLDFIVAAQLRDEIAVLK 659


>gi|225619311|ref|YP_002720537.1| excinuclease ABC subunit B [Brachyspira hyodysenteriae WA1]
 gi|225214130|gb|ACN82864.1| excinuclease ABC, B subunit [Brachyspira hyodysenteriae WA1]
          Length = 682

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/667 (50%), Positives = 464/667 (69%), Gaps = 24/667 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++++ PSGDQ  AI  L+KG+ +  K Q LLGVT SGKTFT+A VIE   RP +VM+
Sbjct: 3   FKLESNFKPSGDQVTAIDSLVKGLENNNKYQTLLGVTASGKTFTIANVIEKANRPTLVMS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP  D YI+K++S+N++IDR+R 
Sbjct: 63  HNKTLAAQLYRELKDFFPNNAVEYFVSYYDYYQPEAYVPAKDLYIDKDASVNDEIDRLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT SLLER D I+V+SVSCIYG+GS E Y ++ + ++     ++ E++  LV  QY+R 
Sbjct: 123 KATTSLLERRDVIIVASVSCIYGLGSPEDYRKLYIAIEKDGEYDRDEIIEKLVSIQYERV 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
              + R  F+V GD+IEI  ++ ++V  RV  FG+ +E I +  P+T QK+   + + IY
Sbjct: 183 KDVLERARFKVIGDTIEIMSAYSDEV-IRVEFFGDTVERIIKINPITRQKLAEQDRVVIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT    L   +K I+EEL  +  + + EG+L+EA+R+  R  YDLEML   G C 
Sbjct: 242 PAKHFVTGGDKLAAGIKLIEEELDEQYNKFKSEGKLVEAERIYGRTKYDLEMLREVGYCA 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR  G+ P  L +Y PED L  +DESHV++PQI GM+ GD  RK TL +Y
Sbjct: 302 GIENYSRPLSGRKEGDRPACLIDYFPEDFLTIIDESHVSVPQIRGMFFGDRSRKETLVKY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+  L   TI +SATP  +EL++   + VEQIIRPTGL+DP +E
Sbjct: 362 GFRLPSALDNRPLYFEEFEKLTHDTIYISATPAEYELKKSSQV-VEQIIRPTGLLDPIIE 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +     Q++ + +EI        RI +T LTK+MAEDLT+YL E  +R RY+HS+++T+E
Sbjct: 421 VYPIDGQIDRILEEIKKTVANNERIFITTLTKKMAEDLTKYLNENGVRTRYLHSDIQTVE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  L+ ILDADK GFLR+ T+LIQTIGRAAR
Sbjct: 481 RVEIIRDLRLGAFDVLVGINLLREGLDVPEVSLILILDADKTGFLRNTTTLIQTIGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI++AD+I+ ++++AI+ET RRR  Q+E+NKKHNI P+++ +KI ++I+    E+
Sbjct: 541 NANGRVIMFADSISDAMKVAIEETERRRTIQMEYNKKHNITPKTIIKKIQDIIER---EE 597

Query: 741 AATTN-------------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
              T+             + ID +Q      K   ++K L K+M  A+D+L FE+A  IR
Sbjct: 598 KVETSYELHFDFRRFNERVKIDPEQ------KSDDYIKELEKEMKKASDSLEFEKAIEIR 651

Query: 788 DEIKRLK 794
           ++I +LK
Sbjct: 652 EKINQLK 658


>gi|213692614|ref|YP_002323200.1| excinuclease ABC, B subunit [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|254764901|sp|B7GSZ2|UVRB_BIFLI RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|213524075|gb|ACJ52822.1| excinuclease ABC, B subunit [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320458765|dbj|BAJ69386.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 703

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/683 (51%), Positives = 470/683 (68%), Gaps = 31/683 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 12  FVVKSPYQPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 72  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK G  + + +LL   V  QYKR 
Sbjct: 132 QATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKEGQQINRDDLLRRFVAMQYKRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I +   + I+
Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIAHEPQVHIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+K I+EEL  RL EL K+G+ LEAQRL+ R TYDLEML   G C 
Sbjct: 251 PASHYVAGPERMERALKTIREELDGRLSELRKQGKELEAQRLDMRTTYDLEMLTQVGVCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L GR  G PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 311 GVENYSRHLDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G+ VEQIIRPTGL+DP ++
Sbjct: 371 GFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLLDPKID 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL 
Sbjct: 430 VRPVKGQIDDLLAEIKARVARNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD  T++++ AIDET RRR KQ+ +N++H I+P+ + +KI +V D +  ED
Sbjct: 550 NVSGVVIMYADETTEAMRQAIDETDRRRAKQIAYNQEHGIDPKPLIKKISDVNDMLAKED 609

Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771
                           A  T++ +     + + K+ +  LK+             L +QM
Sbjct: 610 VDTQTLLEGGYRNAGKAGNTHLGVPVLDPNEADKRHEEILKAGLPAQDLADLIRQLSEQM 669

Query: 772 HLAADNLNFEEAARIRDEIKRLK 794
           H AA+ L FE AAR+RDEI+ LK
Sbjct: 670 HTAAEQLQFELAARLRDEIRDLK 692


>gi|289449747|ref|YP_003474942.1| excinuclease ABC subunit B [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184294|gb|ADC90719.1| excinuclease ABC, B subunit [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 743

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/594 (54%), Positives = 424/594 (71%), Gaps = 1/594 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQPAAI  L  G  +  + Q LLGVTGSGKTFTMA +I  +QRP +V+A
Sbjct: 3   FKLHAPFQPTGDQPAAIEALTAGFTAGRRAQTLLGVTGSGKTFTMANIIARLQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK L+ QL +EFK FFP NAVEYFVSYYD+YQPEAY+  TDTYIEK+S+IN++IDRMRH
Sbjct: 63  PNKTLSGQLCAEFKAFFPENAVEYFVSYYDFYQPEAYIAATDTYIEKDSAINDEIDRMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLER D IVV+SVSCIYG+G   +Y  ++V L+ G +  + E++  LV  QY+R 
Sbjct: 123 SATASLLERRDVIVVASVSCIYGLGDPYTYKHLMVHLREGATKNRDEVIRELVDIQYQRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GDS++I+P   + +  R+S F ++I+ I+E   LTG+ +     + IY
Sbjct: 183 DYDCRRGTFRVRGDSLDIYPISSDKIILRISFFDDEIDRIAEVDALTGKTLALRNYVLIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T R  +  A+  I++EL  R+ EL  EG+++EA RLEQR  YD++ML  TG  +
Sbjct: 243 PASHYATSRAKIMGALSDIEQELTARVKELRAEGKIMEAYRLEQRTRYDMDMLLETGFVK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR PG PP TL ++ PED LL +DESHVT+PQI  MY GD  RK  L +Y
Sbjct: 303 GIENYSRFLDGRKPGVPPYTLLDFFPEDYLLMIDESHVTVPQIGAMYAGDRSRKEALVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+  DNRPL+F E+      T+ VSATPG +E +  +  + EQ+IRPTGL+DPP+E
Sbjct: 363 GFRLPAAFDNRPLKFNEFERKMGQTLFVSATPGKYEAQHSE-FVQEQVIRPTGLLDPPIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I     Q+ED+   I      G R L+  LTK+M+EDLTE+     ++V+Y+HS++   E
Sbjct: 422 IHPVDGQIEDMLAAIKKKTAVGERTLVLTLTKKMSEDLTEFFSSAGLKVKYLHSDIANEE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ I+++LR G+FDVLVGINLLREG+D+PE GL+AILDADKEGFLRS TSLIQ IGR AR
Sbjct: 482 RLRILKELREGEFDVLVGINLLREGIDLPEVGLLAILDADKEGFLRSATSLIQIIGRVAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           NVN KVI+YAD+IT ++Q A+DET RRR  Q  +N+ HNI P +V ++I E+ D
Sbjct: 542 NVNGKVIMYADSITAAMQNAVDETNRRRRIQATYNQIHNITPHTVVKEIRELPD 595


>gi|254421406|ref|ZP_05035124.1| excinuclease ABC, B subunit [Synechococcus sp. PCC 7335]
 gi|196188895|gb|EDX83859.1| excinuclease ABC, B subunit [Synechococcus sp. PCC 7335]
          Length = 680

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/660 (51%), Positives = 455/660 (68%), Gaps = 9/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q  + P+GDQP AI QL+K + +  + Q LLG TG+GKT T+A+ I+ + +P +V+A
Sbjct: 5   FNIQAPFEPAGDQPQAIKQLVKNLKANREYQTLLGATGTGKTHTIARTIDQVGKPTLVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP N+VEYF+SYYDYYQPEAY+P TDTYI+K SSIN++ID +RH
Sbjct: 65  HNKTLAAQLCNELREFFPDNSVEYFISYYDYYQPEAYIPVTDTYIQKTSSINDEIDMLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y    + L++G    Q+++L  L   QY R 
Sbjct: 125 SATRSLFERKDVIVVASISCIYGLGIPSEYLNASIPLRVGAETNQRQVLRDLASVQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG  +++++ + IY
Sbjct: 185 DLEMGRGRFRVKGDVLEIGPAY-EDRVIRVEFFGDEIDAIRYIDPVTGATLQSMDALNIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP   L  A K I+ ELK +L  LE +G+LLEAQRLEQR  YDLEMLE  G C 
Sbjct: 244 PARHFVTPDDKLEAACKGIRAELKEQLEFLESQGKLLEAQRLEQRTRYDLEMLEEVGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFVDESHVTIPQISGMYRGDFHRKATLAE 499
            +ENY+R+L GR PG PP  L +Y P D  LL VDESHVT+PQI  MY GD  RK  L E
Sbjct: 304 GVENYTRHLAGRLPGAPPECLLDYFPHDDWLLAVDESHVTVPQIRAMYNGDQARKRVLIE 363

Query: 500 YGFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +GFRLPS  DNRPL+ EE W+ +    I VSATPG WE+   +G +V+QIIRPTG++DP 
Sbjct: 364 HGFRLPSAADNRPLKAEEFWDKVN-QCIFVSATPGDWEIGLSEGHVVDQIIRPTGVLDPE 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R +  QV+D+  E+ + A++  R L+T LTKRMAEDLT+Y  E  +RVRY+HSEV +
Sbjct: 423 IMVRPSEGQVDDLLGEVRMRAEKDERTLVTTLTKRMAEDLTDYFNEHGVRVRYLHSEVHS 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ERIEII+DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 483 IERIEIIQDLRNGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAQRSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV----KEKIMEVID 734
           AR++  K ILYAD +T+S++ AI ET RRR  Q E+N+K+ I P ++       I+  +D
Sbjct: 543 ARHIEGKAILYADNMTESMEQAIGETERRRAIQAEYNEKNGITPTALIRRQSNSILSFLD 602

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                +A     ++ +    L+ +   A +  L  +M  AA  L FEEA+  RD IK L+
Sbjct: 603 VSRRLNAEELEQAV-SHSDELALEDIPALIGQLETKMKQAAKELKFEEASEFRDRIKHLR 661


>gi|120436638|ref|YP_862324.1| excinuclease ABC subunit B [Gramella forsetii KT0803]
 gi|117578788|emb|CAL67257.1| UvrABC system protein B [Gramella forsetii KT0803]
          Length = 667

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/660 (51%), Positives = 463/660 (70%), Gaps = 8/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P+GDQP AI QL+ GI   E+ Q LLGVTGSGKTFT+A VIE +Q+P +V+A
Sbjct: 3   FNIKSDYKPTGDQPNAIKQLVTGIDKNEQYQTLLGVTGSGKTFTVANVIEDVQKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEA++P + TYIEK+ SINE+I+++R 
Sbjct: 63  HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAFIPSSGTYIEKDLSINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IV++SVSC+YGIG+   + + +V ++    + + + L  LV+  Y R
Sbjct: 123 STTSSLLSGRRDVIVIASVSCLYGIGNPVEFRKNVVSIERDMEISRTKFLHRLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +     G FR+ GD++++FPS+  D A+R+  FG++IE+I  F P T   I   E + I
Sbjct: 183 TEAEFNHGNFRIKGDTVDVFPSY-ADNAFRIHFFGDEIEDIEAFDPGTNDVIEKYERLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A++ I+++L  ++   +  G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLQGAIREIQDDLVKQVDYFQDIGKNLEAKRLDERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y PED L+ VDESHVTIPQ+  M+ GD  RK  L +
Sbjct: 302 SGIENYSRYLDGRMPGTRPFCLLDYFPEDYLMVVDESHVTIPQVHAMFGGDRSRKENLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL++ +G+ VEQ+IRPTGL+DP V
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQKSEGVYVEQVIRPTGLLDPIV 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +   +  RIL+T LTKRMAE+LT+YL   +IR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLIEEIQIRVDKDERILVTTLTKRMAEELTKYLTRIDIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVLVG+NLLREGLD+PE  LVAI+DADKEGFLRS  SL QTIGRAA
Sbjct: 482 ERVEIMQDLRKGIFDVLVGVNLLREGLDLPEVSLVAIIDADKEGFLRSNRSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK-----IMEVID 734
           R+V+ + ILYAD IT S+Q  ID+T  RR+KQ+++N ++NI P  + +K     I E +D
Sbjct: 542 RHVDGRAILYADKITNSMQKTIDQTEYRRQKQIDYNTENNITPTKLVKKFNNALIKEKLD 601

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            I   +      + + +   LSK + +  ++  RK M  AA  L+F +AAR+RDEIK L+
Sbjct: 602 -IYDHETRPDLKAAEEEAEYLSKPQMEKKVREKRKAMETAAKELDFMQAARLRDEIKMLQ 660


>gi|183220252|ref|YP_001838248.1| excinuclease ABC subunit B [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189910370|ref|YP_001961925.1| excinuclease ABC subunit B [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|226695568|sp|B0SDE2|UVRB_LEPBA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226695569|sp|B0SLS0|UVRB_LEPBP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|167775046|gb|ABZ93347.1| Helicase subunit of the DNA excision repair complex [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778674|gb|ABZ96972.1| UvrABC system protein B (UvrB protein; Excinuclease ABC subunit B)
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 664

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/653 (51%), Positives = 461/653 (70%), Gaps = 5/653 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M + +  +GDQ  AI  + K     +    L+GVTGSGKTFTMA+VI  +++P ++++
Sbjct: 4   FKMVSPFKAAGDQVKAIENIAKSFGEGKNKITLVGVTGSGKTFTMAEVITRVKKPTLILS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+ S+NE+ID++R 
Sbjct: 64  HNKTLAAQLFREFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDMSMNEEIDKLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT SLLER+D I+VSSVSCIYG+GS E Y   +V L++GD +++ +++   +  QY R 
Sbjct: 124 RATSSLLERDDVIIVSSVSCIYGLGSPEDYMNSVVMLQVGDKIDRDQIIRKFLHIQYARN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD+IEI PS+ E+   R+ +FG++I+ +S+  PLTG+    ++ + +Y
Sbjct: 184 DIDFSRGNFRVRGDTIEIMPSYQEE-GIRIELFGDEIDGLSKIDPLTGKVKIKLDRVVVY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T  P +  AM+ IKEE+  +     K+G+ LEA+R+E R  YD+EML   G C 
Sbjct: 243 PAKHFITSGPKIKDAMEKIKEEMAAQKEYFLKQGKHLEAERIESRTNYDMEMLLELGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP-EDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
            IENYSR+LTGR  GE P  L +Y P +D LL +DESHVT+PQI GMY GD  RK TL E
Sbjct: 303 GIENYSRHLTGRAEGERPACLLDYFPGKDFLLIIDESHVTLPQIGGMYAGDRSRKQTLVE 362

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL F E+  + P T+ VSATP   EL + + +  EQIIRPTGL+DP V
Sbjct: 363 FGFRLPSALDNRPLNFTEFEAMTPRTLYVSATPDQNELNKSEAVF-EQIIRPTGLLDPVV 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q+ED+ +EI L   Q  R+L+T LTK+M+EDLT+Y  E  +++ Y+HSE+ T+
Sbjct: 422 EVRPTTNQIEDLLNEIRLRINQKERVLITTLTKKMSEDLTDYYKEVGLKIAYLHSEIDTI 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIRDLR G +D +VGINLLREGLDIPE  LVAILDADKEGFLR+  SL+QTIGRAA
Sbjct: 482 ERTEIIRDLRKGVYDCIVGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLVQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K ILYAD +T SI+ A+ ET RRR  Q  HN+K  I PQ+++++I +++   + E
Sbjct: 542 RNVNGKAILYADRMTDSIKKAMSETERRRLIQEAHNEKMGITPQTIQKEIHDILPREMAE 601

Query: 740 DAATTNISIDAQ-QLSLSKKKGKAHLK-SLRKQMHLAADNLNFEEAARIRDEI 790
           + +      D + + +L K K K  L+ +L+++M   A++++FE+AA  RD++
Sbjct: 602 EDSKEEALKDLEKEFTLKKYKTKDKLREALKREMLRYANDMDFEKAAMFRDKM 654


>gi|154494931|ref|ZP_02033936.1| hypothetical protein PARMER_03975 [Parabacteroides merdae ATCC
           43184]
 gi|154085481|gb|EDN84526.1| hypothetical protein PARMER_03975 [Parabacteroides merdae ATCC
           43184]
          Length = 675

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/665 (51%), Positives = 460/665 (69%), Gaps = 11/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA L  GI S    Q LLGVTGSGKTFT+A VI+ +++P ++++
Sbjct: 3   FELSSPFSPTGDQPEAIAALSDGIKSGVPFQTLLGVTGSGKTFTIANVIKEVRKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+  IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLPTTDTYIEKDLQINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVVSSVSC+YG+    ++++ +V L+ G  +++ +LL   V   Y  
Sbjct: 123 RATASLLSGRKDVIVVSSVSCLYGMADPTAFAEKVVHLEKGMRIDRDKLLRRFVDALYVN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
             I   RG FRV GD+++IFP+    +  A+R+  + ++++ IS F P TGQ+I   + +
Sbjct: 183 NKIEFNRGCFRVNGDTVDIFPAIETFDGAAYRIEFWDDEVDRISSFDPQTGQEIDEQDEL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + +VT +  +NTA+  I  +L  ++  L + G+  EA+RL +R+T+DLEM+   G
Sbjct: 243 NIYPTNLFVTTQERINTAIGQIDVDLGTQVNFLREIGKPYEAKRLYERVTFDLEMIRELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR  GE P  L +Y P+D LL VDESHVTIPQI  MY GD+ RK  L
Sbjct: 303 HCSGIENYSRYFDGRQAGERPFCLLDYFPKDFLLVVDESHVTIPQIRAMYGGDYSRKKNL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLP+ MDNRPL F+E+  L P  I VSATP  +ELE+ +GI+V+Q+IRPTGL+DP
Sbjct: 363 VDYGFRLPAAMDNRPLTFDEFESLTPLAIYVSATPADYELEKSEGIVVDQVIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    Q++D+ +EI   A    R+L+T LTKRMAE+LT YL    IR  Y+HS+V 
Sbjct: 423 VIEVRPTLNQIDDLMEEITQRAAVDERVLVTTLTKRMAEELTAYLTRMGIRCNYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERI+I+ DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERIQIMDDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---- 733
           AARNVN KVI YAD IT S++L +DET RRREKQL +N+KH I P+ V +  + ++    
Sbjct: 543 AARNVNGKVIFYADKITDSMRLTMDETARRREKQLAYNEKHGITPKQVIKNSVSLVAEKQ 602

Query: 734 DPILLEDAATT----NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            P+  E  A      ++  D     +++K+ +  ++  +KQM  AA  L+F EAA+ RDE
Sbjct: 603 QPVTGEPYAYVEPEPSLVADPVVQYMNRKQLEKAIERTKKQMMEAAKKLDFIEAAQFRDE 662

Query: 790 IKRLK 794
           + +L+
Sbjct: 663 LVKLE 667


>gi|329920416|ref|ZP_08277148.1| excinuclease ABC, B subunit [Lactobacillus iners SPIN 1401G]
 gi|328936092|gb|EGG32545.1| excinuclease ABC, B subunit [Lactobacillus iners SPIN 1401G]
          Length = 665

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/657 (50%), Positives = 460/657 (70%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI QL        K Q+L G TG+GKTFTMA +I  + +P +V++
Sbjct: 10  FELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L++R D IVV+SVSCI+G+G    Y++ ++ L +G+  E+  LL  LV  QY R 
Sbjct: 130 ATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +EIFP+   +  +RV  FG++I++I E   LTG+ +   E I ++
Sbjct: 190 DLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGKCEQISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  IK+EL +++   + +G+LLEAQR++QR  YD+EM++  G   
Sbjct: 250 PATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMMQEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++  R  GEPP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +EL +    +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDK-VVEQIIRPTGLLDPIVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN+  ++  R+ +T LTK+M+EDLT+YL E  I+V+Y+HSE+KTLE
Sbjct: 429 VRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLRS   LIQ +GRAAR
Sbjct: 489 RMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSNRPLIQMMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD IT S+Q AID T RRR  Q+  N+KH+I P+++ + I ++I      D
Sbjct: 549 NENGKVIMYADHITDSMQAAIDVTERRRHIQMLFNQKHHIIPKTIVKPIRDIISHTKDVD 608

Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               +I+ D   L+   LS K+ +  + +L +QM +AA  L+FE AA +RD I  LK
Sbjct: 609 QKDKHIN-DFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAIIDLK 664


>gi|312873113|ref|ZP_07733172.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|311091346|gb|EFQ49731.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 2062A-h1]
          Length = 665

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/657 (50%), Positives = 460/657 (70%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI QL        K Q+L G TG+GKTFTMA +I  + +P +V++
Sbjct: 10  FELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L++R D IVV+SVSCI+G+G    Y++ ++ L +G+  E+  LL  LV  QY R 
Sbjct: 130 ATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +EIFP+   +  +RV  FG++I++I E   LTG+ +   E I ++
Sbjct: 190 DLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGKCEQISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  IK+EL +++   + +G+LLEAQR++QR  YD+EM++  G   
Sbjct: 250 PATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMMQEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++  R  GEPP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +EL +    +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDK-VVEQIIRPTGLLDPIVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN+  ++  R+ +T LTK+M+EDLT+YL E  I+V+Y+HSE+KTLE
Sbjct: 429 VRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLRS   L+Q +GRAAR
Sbjct: 489 RMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQMMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD IT S+Q AID T RRR  Q+  N+KH+I P+++ + I ++I      D
Sbjct: 549 NENGKVIMYADHITDSMQAAIDVTERRRHIQMLFNQKHHIIPKTIVKPIRDIISHTKDVD 608

Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               +I+ D   L+   LS K+ +  + +L +QM +AA  L+FE AA +RD I  LK
Sbjct: 609 QKDKHIN-DFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAIIDLK 664


>gi|225010655|ref|ZP_03701125.1| excinuclease ABC, B subunit [Flavobacteria bacterium MS024-3C]
 gi|225005208|gb|EEG43160.1| excinuclease ABC, B subunit [Flavobacteria bacterium MS024-3C]
          Length = 665

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/658 (50%), Positives = 456/658 (69%), Gaps = 5/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ + P+GDQP AIAQ++ GI ++   Q L+GVTGSGKTFT+A VI+ +Q+P +++A
Sbjct: 3   FSLESPFKPTGDQPQAIAQIVSGIQAKTPSQTLVGVTGSGKTFTVANVIQEVQKPTLILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P + TYIEK+ SINE I+++R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPNNAVEYFVSYYDYYQPEAYIPTSGTYIEKDLSINEDIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D +V++SVSC+YG+G+   + + +V+++    + +   L  LV+  Y R
Sbjct: 123 STTSSLLSGREDVLVIASVSCLYGMGNPVEFEKNVVRIERDQIISRTAFLKQLVQALYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                + G+FRV GD +++FPS+  D A RV  FG++IEEI  F PL  + +   E ++I
Sbjct: 183 TTADFVNGSFRVKGDVVDVFPSY-TDHAIRVHFFGDEIEEIESFDPLHNKTLETFEQLRI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +V+    L  A+  I+E++  ++   + EG+ LEA+RLE+R T+DLEM+   G C
Sbjct: 242 FPANMFVSSPDILQNAIHSIQEDMVKQVNFFKTEGKHLEAKRLEERTTFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ VDESHVTIPQ+  M+ GD  RK  L  
Sbjct: 302 SGIENYSRYLDGRAPGTRPFCLLDYFPKDFLMVVDESHVTIPQVHAMFGGDRSRKENLVT 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L P  + VSATP  +ELEQ QG++VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEILTPQALYVSATPADYELEQSQGVVVEQIIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+  EI        R L+T LTKRMAE+L +YL    +R RY+HS+V TL
Sbjct: 422 EVRPSTNQIDDLVAEIQDRVAIDERTLVTTLTKRMAEELAKYLTNIQVRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAI+DADKEGFLR+  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGIFDVLIGVNLLREGLDLPEVSLVAIIDADKEGFLRNARSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K I+YAD  TKS+Q  IDET  RREKQ+ +N  HN  P+++ + +  V+    + 
Sbjct: 542 RNVNGKAIMYADKTTKSMQKTIDETNYRREKQIAYNTAHNTVPKALNKSLDNVLTKNSVS 601

Query: 740 DAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  +  AQ+     L+ ++    + + RK M  AA NL+F EAA++RDEIK L+
Sbjct: 602 AYHFEKANHRAQEPDPNYLTPEERAKMIVAKRKTMEKAAKNLDFLEAAKLRDEIKALQ 659


>gi|312875110|ref|ZP_07735127.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 2053A-b]
 gi|311089400|gb|EFQ47827.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 2053A-b]
          Length = 665

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/657 (50%), Positives = 460/657 (70%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI QL        K Q+L G TG+GKTFTMA +I  + +P +V++
Sbjct: 10  FELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L++R D IVV+SVSCI+G+G    Y++ ++ L +G+  E+  LL  LV  QY R 
Sbjct: 130 ATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +EIFP+   +  +RV  FG++I++I E   LTG+ +   E I ++
Sbjct: 190 DLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGKCEQISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  IK+EL +++   + +G+LLEAQR++QR  YD+EM++  G   
Sbjct: 250 PATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMMQEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++  R  GEPP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +EL +    +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDK-VVEQIIRPTGLLDPIVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN+  ++  R+ +T LTK+M+EDLT+YL E  I+V+Y+HSE+KTLE
Sbjct: 429 VRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLRS   L+Q +GRAAR
Sbjct: 489 RMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQMMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD IT S+Q AID T RRR  Q+  N+KH+I P+++ + I ++I      D
Sbjct: 549 NENGKVIMYADHITDSMQAAIDVTERRRNIQMLFNQKHHIIPKTIVKPIRDIISHTKDVD 608

Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               +I+ D   L+   LS K+ +  + +L +QM +AA  L+FE AA +RD I  LK
Sbjct: 609 QKDKHIN-DFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAIIDLK 664


>gi|309808271|ref|ZP_07702178.1| excinuclease ABC, B subunit [Lactobacillus iners LactinV 01V1-a]
 gi|312870824|ref|ZP_07730930.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 3008A-a]
 gi|315653879|ref|ZP_07906795.1| excision endonuclease subunit UvrB [Lactobacillus iners ATCC 55195]
 gi|325913350|ref|ZP_08175718.1| excinuclease ABC, B subunit [Lactobacillus iners UPII 60-B]
 gi|308168474|gb|EFO70585.1| excinuclease ABC, B subunit [Lactobacillus iners LactinV 01V1-a]
 gi|311093700|gb|EFQ52038.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 3008A-a]
 gi|315488575|gb|EFU78221.1| excision endonuclease subunit UvrB [Lactobacillus iners ATCC 55195]
 gi|325477453|gb|EGC80597.1| excinuclease ABC, B subunit [Lactobacillus iners UPII 60-B]
          Length = 665

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/657 (50%), Positives = 460/657 (70%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI QL        K Q+L G TG+GKTFTMA +I  + +P +V++
Sbjct: 10  FELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L++R D IVV+SVSCI+G+G    Y++ ++ L +G+  E+  LL  LV  QY R 
Sbjct: 130 ATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +EIFP+   +  +RV  FG++I++I E   LTG+ +   E I ++
Sbjct: 190 DLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGKCEQISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  IK+EL +++   + +G+LLEAQR++QR  YD+EM++  G   
Sbjct: 250 PATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMMQEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++  R  GEPP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +EL +    +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDK-VVEQIIRPTGLLDPIVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN+  ++  R+ +T LTK+M+EDLT+YL E  I+V+Y+HSE+KTLE
Sbjct: 429 VRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLRS   LIQ +GRAAR
Sbjct: 489 RMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLIQMMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD IT S+Q AID T RRR  Q+  N+KH+I P+++ + I ++I      D
Sbjct: 549 NENGKVIMYADHITDSMQAAIDVTERRRHIQMLFNQKHHIIPKTIVKPIRDIISHTKDVD 608

Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               +I+ D   L+   LS K+ +  + +L +QM +AA  L+FE AA +RD I  LK
Sbjct: 609 QKDKHIN-DFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAIIDLK 664


>gi|154150649|ref|YP_001404267.1| excinuclease ABC subunit B [Candidatus Methanoregula boonei 6A8]
 gi|153999201|gb|ABS55624.1| excinuclease ABC, B subunit [Methanoregula boonei 6A8]
          Length = 660

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/660 (52%), Positives = 450/660 (68%), Gaps = 27/660 (4%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F++ + + P+G QP AIAQL  G+    + Q LLGVTGSGKTFTMA VI A  +P +
Sbjct: 1   MTGFELVSSFLPAGSQPEAIAQLSDGLADNARFQTLLGVTGSGKTFTMANVIAAANKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLY EF +FFPHN VEYFVSYYDYYQPE+Y+P  D YIEK+S+IN +I+ 
Sbjct: 61  VIAHNKTLAAQLYQEFCDFFPHNRVEYFVSYYDYYQPESYIPAKDQYIEKDSAINPKIEM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SL  R D IVV+SVSCI+G+G+ E++  +   L +G  + + E++S L+  Q+
Sbjct: 121 LRLSATASLSHRRDVIVVASVSCIFGLGNPENFRNLGFDLSVGQKIPRNEIMSRLLDIQF 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI +  G FRV GD I+I P +  D+  R+ +FG++IE+I E    TG K   ++  
Sbjct: 181 ERNDIDLSPGRFRVKGDIIDIVPGYFNDI-IRIELFGDEIEKIREVDKNTGAKKEEMKYF 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+VTP     TA+  I+EEL   L  L     L+EA RL QR  +DLEM+  TG
Sbjct: 240 YVYPARHFVTPESAQKTAVASIQEELDEVLPTLG----LVEAHRLRQRTNFDLEMIRETG 295

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC+ IENYSR+  GR  GE P  L +Y P+D LL +DESH TIPQ+ GMY GD  RK TL
Sbjct: 296 SCKGIENYSRHFDGRKAGEKPYCLLDYFPDDFLLIIDESHQTIPQLHGMYNGDRSRKETL 355

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL+F E+       + VSATPG +EL+    + VEQIIRPTGLVDP
Sbjct: 356 VNYGFRLPSALDNRPLKFFEFEQYMRQVVFVSATPGPYELKHSTQV-VEQIIRPTGLVDP 414

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q  DV +E+     +G R+L+T LTK++AE+L+EYL ++ IR RY+HSE++
Sbjct: 415 SVEVRPIEGQTLDVIEEVKKTIARGDRVLVTTLTKKLAEELSEYLADKGIRTRYLHSEIQ 474

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIR+LRLGKFDVLVGINLLREGLDIPE G + ILDADKEGFLR   SLIQ IGR
Sbjct: 475 TLERTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDTRSLIQIIGR 534

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS----VKEKIMEVI 733
           AARNVN+ V+LYAD++T S++ AI ET RRRE Q+ +N+ H+I PQ+    VKEK +E+ 
Sbjct: 535 AARNVNANVVLYADSMTDSMKSAISETRRRREMQIAYNENHHITPQTIIKPVKEKEVEIK 594

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           D   +  A   N+ I+                 L KQM  AAD+L+FE A  +R+++K+L
Sbjct: 595 DTKHVPKAEIPNVVIE-----------------LEKQMRDAADSLDFERAIALREQVKKL 637


>gi|325911395|ref|ZP_08173807.1| excinuclease ABC, B subunit [Lactobacillus iners UPII 143-D]
 gi|325476745|gb|EGC79899.1| excinuclease ABC, B subunit [Lactobacillus iners UPII 143-D]
          Length = 665

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/657 (50%), Positives = 459/657 (69%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI QL        K Q+L G TG+GKTFTMA +I  + +P +V++
Sbjct: 10  FELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L++R D IVV+SVSCI+G+G    Y++ ++ L +G+  E+  LL  LV  QY R 
Sbjct: 130 ATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +EIFP+   +  +RV  FG++I++I E   LTG+ +   E I ++
Sbjct: 190 DLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGKCEQISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  IK+EL +++   + +G+LLEAQR++QR  YD+EM++  G   
Sbjct: 250 PATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMMQEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++  R  GEPP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +EL +    +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDK-VVEQIIRPTGLLDPIVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN+  ++  R+ +T LTK+M+EDLT+YL E  I+V+Y+HSE+KTLE
Sbjct: 429 VRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLRS   LIQ +GRAAR
Sbjct: 489 RMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSNRPLIQMMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD IT S+Q AID T RRR  Q+  N+KH+I P+++ + I ++I      D
Sbjct: 549 NENGKVIMYADHITDSMQAAIDVTERRRRIQMLFNQKHHIIPKTIVKPIRDIISHTKDVD 608

Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                I+ D   L+   LS K+ +  + +L +QM +AA  L+FE AA +RD I  LK
Sbjct: 609 QKDKQIN-DFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAIIDLK 664


>gi|309804718|ref|ZP_07698783.1| excinuclease ABC, B subunit [Lactobacillus iners LactinV 09V1-c]
 gi|308166110|gb|EFO68328.1| excinuclease ABC, B subunit [Lactobacillus iners LactinV 09V1-c]
          Length = 665

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/656 (50%), Positives = 456/656 (69%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI QL        K Q+L G TG+GKTFTMA +I  + +P +V++
Sbjct: 10  FELVSKFQPAGDQKQAIDQLCDNFKQGVKEQILHGATGTGKTFTMANLIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L++R D IVV+SVSCI+G+G    Y++ ++ L +G+  E+  LL  LV  QY R 
Sbjct: 130 ATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +EIFP+   +  +RV  FG++I++I E   LTG+ +   E I ++
Sbjct: 190 DLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGKCEQISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  IK+EL +++   + +G+LLEAQR++QR  YD+EM++  G   
Sbjct: 250 PATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMMQEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++  R  GEPP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +EL +    +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDK-VVEQIIRPTGLLDPIVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN+  ++  R+ +T LTK+M+EDLT+YL E  I+V+Y+HSE+KTLE
Sbjct: 429 VRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLRS   L+Q +GRAAR
Sbjct: 489 RMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQMMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD IT S+Q AID T RRR  Q+  N+KH+I P+++ + I ++I      D
Sbjct: 549 NENGKVIMYADHITDSMQAAIDVTERRRHIQMLFNQKHHIIPKTIVKPIRDIISHTKDVD 608

Query: 741 AATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                I+   D     LS K+    + +L +QM +AA  L+FE AA +RD I  LK
Sbjct: 609 QKDKQINDFADLNFDELSAKQKDQMIINLTEQMKIAAQKLDFETAATLRDAIIDLK 664


>gi|16331511|ref|NP_442239.1| excinuclease ABC subunit B [Synechocystis sp. PCC 6803]
 gi|3123003|sp|Q55170|UVRB_SYNY3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|1001167|dbj|BAA10309.1| excinuclease ABC subunit B [Synechocystis sp. PCC 6803]
          Length = 669

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/660 (50%), Positives = 449/660 (68%), Gaps = 8/660 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +   + P+GDQP AIA L++ +    K Q LLG TG+GKTFTMA VI  + RP +V+
Sbjct: 5   LFSLHAPFRPTGDQPTAIASLIESLQGEHKFQTLLGATGTGKTFTMASVIAELGRPTLVL 64

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAY+P TDTYIEK +SIN++ID +R
Sbjct: 65  AHNKTLAAQLCNELRQFFPENAVEYFISYYDYYQPEAYIPVTDTYIEKTASINDEIDMLR 124

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSATRSL ER D IVV+S+SCIYG+G    Y +  V L++G   + + ++  LV  QY R
Sbjct: 125 HSATRSLFERRDVIVVASISCIYGLGIPSQYLKAAVPLQVGAEYDPRLVIRDLVNVQYSR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ + RG FR+ GD +EI P++ ED   R+  FG+++E +    P++G+ +++++ I I
Sbjct: 185 NDVELQRGRFRLKGDVLEIVPAY-EDRVIRIEFFGDEVEALRLIDPVSGEILQSLDRISI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y   H+VTP  TL  A + I+ E++ ++  LEK   L+EAQRL QR  YDLEML   G C
Sbjct: 244 YPARHFVTPEETLEKACQQIQTEMEQQVAFLEKNNLLVEAQRLSQRTRYDLEMLREVGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +ENYSRYL  R  GEPP  L +Y PED LL +DESHVTIPQ+ GMY GD  RK  L +
Sbjct: 304 NGVENYSRYLADRQAGEPPECLVDYFPEDWLLVIDESHVTIPQLRGMYNGDQARKKVLID 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS  DNRPL+ EE+       + VSATPG WE+EQ +  ++EQ+IRPTG++DP +
Sbjct: 364 HGFRLPSAADNRPLKAEEFWQKVKQCVFVSATPGVWEIEQSEARVIEQVIRPTGVLDPEI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R    QV+D+Y EI    +   R+L+T LTKRMAEDLT+Y  ER I+V+Y+HSE++++
Sbjct: 424 FVRPTTGQVDDLYGEIQTRVKLKERVLITTLTKRMAEDLTDYFSERGIKVQYLHSEIQSI 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +RIEI++ LR G+FDVL+G+NLLREGLD+PE  LVAI+DADKEGFLR++ SLIQTIGRAA
Sbjct: 484 QRIEILQALRDGEFDVLIGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-- 737
           R++  + ILYAD  T S+Q AI ET RRR+ Q E+N+KH I PQ + ++    I   L  
Sbjct: 544 RHIRGQAILYADNFTDSMQKAIAETERRRKIQQEYNEKHGITPQPINKRANNAILQFLDI 603

Query: 738 ---LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              L       +   AQ L L K      ++ L ++M  AA    FE AA  RD I+ L+
Sbjct: 604 SRRLNSQQLEEVYEQAQDLPLEKIPDL--IQQLEEKMQEAAKKQEFEVAAIYRDRIQHLR 661


>gi|298207799|ref|YP_003715978.1| excinuclease ABC subunit B [Croceibacter atlanticus HTCC2559]
 gi|83850437|gb|EAP88305.1| excinuclease ABC subunit B [Croceibacter atlanticus HTCC2559]
          Length = 668

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/660 (51%), Positives = 455/660 (68%), Gaps = 8/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++++Y P+GDQP AI QL+  I   E+   LLGVTGSGKTFT+A VI+ +QRP +V+A
Sbjct: 3   FTIESEYKPTGDQPGAIKQLVSNIEENEQYSTLLGVTGSGKTFTVANVIKEVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK+FFPHNA+EYFVSYYDYYQPEA++P + TYIEK+ SINE+I+++R 
Sbjct: 63  HNKTLAAQLYSEFKSFFPHNAIEYFVSYYDYYQPEAFIPTSGTYIEKDLSINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D +VV+SVSC+YGIG+   + + ++ +K    + + ELL  LV+  Y R
Sbjct: 123 STTSSLLSGRRDVLVVASVSCLYGIGNPVEFQKNVISIKRDQQISRTELLKKLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                  G FR+ GD+++++PS+ +D A+R+  FG++IE+I +F   T   I   E + I
Sbjct: 183 TTGEFNHGNFRIKGDTLDVYPSYADD-AFRIHFFGDEIEDIEQFDVQTNTVIEKYERLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L+ A+  I  +L  +    +  G+ LEA+RLE+R  +DLEM++  G C
Sbjct: 242 YPANMFVTSPDVLHKAIDNIALDLGKQTEYFKDIGKHLEAKRLEERTNFDLEMIKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y PED L+ VDESHVTIPQ+  MY GD  RK  L +
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPEDYLMVVDESHVTIPQVHAMYGGDRSRKENLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL+FEE+  L+   I VSATP  +EL++  G+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAALDNRPLKFEEFEALQNQVIYVSATPADYELQKTDGVYVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI     +  R L+T LTKRMAE+L +YL   +IR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLIEEIQTRVDKDQRTLVTTLTKRMAEELVKYLTRIDIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QTIGRAA
Sbjct: 482 ERVEIMQDLRKGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV-----ID 734
           R++  K I+YAD IT S+Q  IDET  RR KQ+ +N KHNI P ++K+ I        ++
Sbjct: 542 RHLEGKAIMYADKITDSMQKTIDETEYRRTKQINYNTKHNITPTALKKGIDSALAGKKVE 601

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           P   E A T   + + +    ++ +    ++ +RK M  AA  L+F EAAR RDEIK L+
Sbjct: 602 PYKFEKAPTLK-AAEEEVAYFTEDQLDKRIREVRKAMEKAAKELDFIEAARFRDEIKMLQ 660


>gi|259501061|ref|ZP_05743963.1| excision endonuclease subunit UvrB [Lactobacillus iners DSM 13335]
 gi|302190490|ref|ZP_07266744.1| excinuclease ABC subunit B [Lactobacillus iners AB-1]
 gi|259167755|gb|EEW52250.1| excision endonuclease subunit UvrB [Lactobacillus iners DSM 13335]
          Length = 665

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/657 (50%), Positives = 459/657 (69%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI QL        K Q+L G TG+GKTFTMA +I  + +P +V++
Sbjct: 10  FELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L++R D IVV+SVSCI+G+G    Y++ ++ L +G+  E+  LL  LV  QY R 
Sbjct: 130 ATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +EIFP+   +  +RV  FG++I++I E   LTG+ +   E I ++
Sbjct: 190 DLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGKCEQISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  IK+EL +++   + +G+LLEAQR++QR  YD+EM++  G   
Sbjct: 250 PATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMMQEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++  R  GEPP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +EL +    +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDK-VVEQIIRPTGLLDPIVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN+  ++  R+ +T LTK+M+EDLT+YL E  I+V+Y+HSE+KTLE
Sbjct: 429 VRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLRS   L+Q +GRAAR
Sbjct: 489 RMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQMMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD IT S+Q AID T RRR  Q+  N+KH+I P+++ + I ++I      D
Sbjct: 549 NENGKVIMYADHITDSMQAAIDVTERRRNIQMLFNQKHHIIPKTIVKPIRDIISHTKDVD 608

Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                I+ D   L+   LS K+ +  + +L +QM +AA  L+FE AA +RD I  LK
Sbjct: 609 QKDKQIN-DFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAIIDLK 664


>gi|309809352|ref|ZP_07703214.1| excinuclease ABC, B subunit [Lactobacillus iners SPIN 2503V10-D]
 gi|312874337|ref|ZP_07734368.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 2052A-d]
 gi|308170263|gb|EFO72294.1| excinuclease ABC, B subunit [Lactobacillus iners SPIN 2503V10-D]
 gi|311090103|gb|EFQ48516.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 2052A-d]
          Length = 665

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/657 (50%), Positives = 459/657 (69%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI QL        K Q+L G TG+GKTFTMA +I  + +P +V++
Sbjct: 10  FELVSKFQPAGDQKQAIDQLCDNFKQGVKEQILHGATGTGKTFTMANLIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L++R D IVV+SVSCI+G+G    Y++ ++ L +G+  E+  LL  LV  QY R 
Sbjct: 130 ATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +EIFP+   +  +RV  FG++I++I E   LTG+ +   E I ++
Sbjct: 190 DLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGKCEQISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  IK+EL +++   + +G+LLEAQR++QR  YD+EM++  G   
Sbjct: 250 PATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMMQEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++  R  GEPP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +EL +    +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDK-VVEQIIRPTGLLDPIVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN+  ++  R+ +T LTK+M+EDLT+YL E  I+V+Y+HSE+KTLE
Sbjct: 429 VRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLRS   L+Q +GRAAR
Sbjct: 489 RMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQMMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD IT S+Q AID T RRR  Q+  N+KH+I P+++ + I ++I      D
Sbjct: 549 NENGKVIMYADHITDSMQAAIDVTERRRNIQMLFNQKHHIIPKTIVKPIRDIISHTKDVD 608

Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                I+ D   L+   LS K+ +  + +L +QM +AA  L+FE AA +RD I  LK
Sbjct: 609 QKDKQIN-DFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAIIDLK 664


>gi|292669610|ref|ZP_06603036.1| excision endonuclease subunit UvrB [Selenomonas noxia ATCC 43541]
 gi|292648819|gb|EFF66791.1| excision endonuclease subunit UvrB [Selenomonas noxia ATCC 43541]
          Length = 681

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/657 (53%), Positives = 459/657 (69%), Gaps = 3/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P GDQP AIA L  GI +    Q+LLG TG+GKT+TMAKVIE +QRP +V+A
Sbjct: 18  FKVAAPFEPMGDQPQAIADLAGGIENGMTAQVLLGATGTGKTYTMAKVIERVQRPTLVIA 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK+FFP N V YFVSYYDYYQPEAY+ +TDTYIEK++SIN++ID +RH
Sbjct: 78  HNKTLAAQLASEFKSFFPDNYVGYFVSYYDYYQPEAYIAQTDTYIEKDASINDEIDELRH 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+GS ESY +M++ +  G ++ ++E+L  LV  +Y+R 
Sbjct: 138 SATCSLFERRDVIIVASVSCIYGLGSPESYHEMVLSVHKGQTIPREEILQKLVSIRYERN 197

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EI+P+   +   R+ MFG+++E I EF   +G+         ++
Sbjct: 198 DIAFERGRFRVRGDVVEIYPAGYNNRGVRIEMFGDEVERIIEFDVTSGEVYGERLHSMVF 257

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    +  AM  I+ EL  RL EL+  G+LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 258 PASHYVTDDEDMKIAMADIRTELAERLDELKGAGKLLEAQRLEQRTNYDLEMMEEMGYCS 317

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT RN G+ P TL +Y PED L+ +DESHVT+PQI  MY GD  RK +L + 
Sbjct: 318 GIENYSRHLTHRNAGDTPYTLLDYFPEDFLIMIDESHVTLPQIHAMYGGDRSRKISLVDN 377

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       + VSATPG +E++Q Q  + +QIIRPTGL+DP VE
Sbjct: 378 GFRLPSAFDNRPLTFEEFAARVNQIVYVSATPGKYEIQQAQ-QVTQQIIRPTGLLDPVVE 436

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI L  ++  R+L+T LTKRMAE LT+YL E  ++VRY+HS++ T+E
Sbjct: 437 VRPLDGQIDDLLSEIRLRIERNERVLVTTLTKRMAEHLTDYLREAGVKVRYLHSDIATIE 496

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EII DLR G+FDVLVGINLLREGLD+PE  L+AILDADKEGFLRS T+LIQTIGRAAR
Sbjct: 497 RAEIIHDLRAGEFDVLVGINLLREGLDMPEVSLIAILDADKEGFLRSDTALIQTIGRAAR 556

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+Y D +T S+Q AI+ET RRR  Q E+N+ H I P+++++ I+ +I+  L+  
Sbjct: 557 NAGGHVIMYGDVVTGSMQRAIEETERRRTIQNEYNEAHGITPKTIEKPIVPLIEMTLVAA 616

Query: 741 AATTNIS-IDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    D++      KK + +L KSL ++M  A+  L FE AA +RD I  L+ 
Sbjct: 617 EGKEPYGRQDSKAKKKLAKKDRENLVKSLLREMQQASRALEFERAAELRDMIVELEG 673


>gi|320529473|ref|ZP_08030559.1| excinuclease ABC subunit B [Selenomonas artemidis F0399]
 gi|320138267|gb|EFW30163.1| excinuclease ABC subunit B [Selenomonas artemidis F0399]
          Length = 678

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/656 (53%), Positives = 462/656 (70%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P GDQP AIA L  GI + +  Q+LLG TG+GKT+TMAKVIE +QRP +V+A
Sbjct: 18  FKVVAPFEPMGDQPHAIADLAGGIENGQTAQVLLGATGTGKTYTMAKVIERVQRPTLVIA 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK+FFP+N V YFVSYYDYYQPEAY+ +TDTYIEK++SIN++ID +RH
Sbjct: 78  HNKTLAAQLASEFKSFFPNNYVGYFVSYYDYYQPEAYIAQTDTYIEKDASINDEIDELRH 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+GS ESY +M++ +  G ++ ++E+L  LV  +Y+R 
Sbjct: 138 SATCSLFERRDVIIVASVSCIYGLGSPESYHEMVLSVHKGQTIPREEILQKLVSIRYERN 197

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   +   R+ MFG+++E I EF  ++G+         ++
Sbjct: 198 DIAFERGRFRVRGDVVEIFPAGYNNRGVRIEMFGDEVERIIEFDVVSGEIYGERLHSMVF 257

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    +  AM  I+ EL+ +L  L+ EG+LLEAQRLEQR  YDLEM++  G C 
Sbjct: 258 PASHYVTEDEDMKIAMADIRTELEEQLAMLKGEGKLLEAQRLEQRTNYDLEMMQEMGYCS 317

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  GE P TL +Y PED L+ +DESHVT+PQI  MY GD  RK +L + 
Sbjct: 318 GIENYSRHLTHRKAGETPYTLLDYFPEDFLIMIDESHVTLPQIHAMYGGDRSRKVSLVDN 377

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F+E+       + VSATPG +E++Q Q  + +QIIRPTGL+DP VE
Sbjct: 378 GFRLPSAFDNRPLTFDEFAARVNQIVYVSATPGKYEMQQAQ-QVTQQIIRPTGLLDPVVE 436

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI L  ++  R+L+T LTKRMAE LT+YL E  ++VRY+HS++ T+E
Sbjct: 437 VRPLDGQIDDLLSEIRLRIERRERVLVTTLTKRMAEHLTDYLREAGVKVRYLHSDIATIE 496

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EII DLR G+FDVLVGINLLREGLD+PE  L+AILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 497 RAEIIHDLRAGEFDVLVGINLLREGLDMPEVSLIAILDADKEGFLRSDTSLIQTIGRAAR 556

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+Y D +T S++ AIDET RRRE Q  +NK+H I P+++ + ++ +I+  L+  
Sbjct: 557 NASGHVIMYGDVVTGSMRRAIDETERRREIQEAYNKEHGIVPKTIVKPVVPLIEMTLVAA 616

Query: 741 AATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T        +     KK + +L KSL ++M  A+  L FE AA +RD I  L+ 
Sbjct: 617 EGTAPYGKKDGKKKKLGKKERENLVKSLLREMQQASRALEFERAAELRDMIVELEG 672


>gi|332521822|ref|ZP_08398273.1| excinuclease ABC, B subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332042652|gb|EGI78853.1| excinuclease ABC, B subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 667

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/659 (50%), Positives = 470/659 (71%), Gaps = 13/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+++ P+GDQPAAI QL+ GI++ EK Q LLGVTGSGKTFT+AK +E++++P +V+A
Sbjct: 3   FKIQSEFSPTGDQPAAIKQLVDGINANEKYQTLLGVTGSGKTFTVAKFVESVKKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P +  YIEK+ SINE+I++MR 
Sbjct: 63  HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPTSGVYIEKDLSINEEIEKMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D +VV+SVSC+YGIG+   + + ++ +K    + + +LL  LV+  Y R
Sbjct: 123 STTSSLLSGRRDVLVVASVSCLYGIGNPIEFQKNVITIKRDQEISRTKLLHQLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +     G FR+ GD+++IFPS+ +D A+RV  FG++IE I +F   T + I   + + I
Sbjct: 183 TEADFKHGNFRIKGDTVDIFPSYADD-AFRVHFFGDEIEMIEQFNIQTNEVIDEYDRLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+K I+++L  +    +  G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLQGAIKEIQDDLVKQHDYFKDIGKHLEAKRLKERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ VDESHVT+ Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGRLPGTRPFCLLDYFPDDYLMVVDESHVTVSQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   + VSATP  +EL++  G+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVLYVSATPADYELQKTDGVYVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LT+YL   +IRVRY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLIEEIQVRVEKDERTLVTTLTKRMAEELTKYLSRIDIRVRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           R++N K I+YAD ITKS+Q  IDET  RR KQ+++N  +N+ P+++ +     +D +L +
Sbjct: 542 RHLNGKAIMYADKITKSMQSTIDETEYRRAKQIKYNTDNNLTPKALNKS----LDNVLSK 597

Query: 740 DAATT-NISIDAQQLS------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           ++ +T +  ++A + +      L+K + +  ++  RK M  AA  L+F  AA++RDEIK
Sbjct: 598 NSVSTYSYELEAARAAEPESEYLTKAELEKKIREKRKLMEKAAKALDFIIAAQLRDEIK 656


>gi|260881593|ref|ZP_05404787.2| excinuclease ABC subunit B [Mitsuokella multacida DSM 20544]
 gi|260848464|gb|EEX68471.1| excinuclease ABC subunit B [Mitsuokella multacida DSM 20544]
          Length = 699

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/680 (51%), Positives = 469/680 (68%), Gaps = 5/680 (0%)

Query: 121 KIWTPHRSWSI----NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGV 176
           +IW  +R   +      H  +   F++   + P GDQP AIA+L  G+ + ++ Q+LLG 
Sbjct: 3   RIWEGNRMAMVPKLNTMHFDEERPFEVVAPFEPMGDQPQAIAELAAGVENGQQAQVLLGA 62

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           TG+GKT+T+AKVIE +Q+P +V+A NK LAAQL SEFK FFP+N V YFVSYYD+YQPEA
Sbjct: 63  TGTGKTYTIAKVIEKVQKPTLVIAHNKTLAAQLASEFKAFFPNNYVGYFVSYYDFYQPEA 122

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           Y+  TDTYIEK++SIN++ID +RHSAT SL ER D I+V+SVSCIYG+GS ESY +M++ 
Sbjct: 123 YIASTDTYIEKDASINDEIDELRHSATCSLFERRDVIIVASVSCIYGLGSPESYHEMVLS 182

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L  G  V++  +L  LV  +Y+R D+   RG FRV GD IE+FP+   + A R+ +FG++
Sbjct: 183 LHKGQIVDRDAILKKLVSIRYERNDVAFERGQFRVRGDVIEVFPAGYNNRAVRIELFGDE 242

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           ++ I EF  +TG+         ++  SHYVT    L  AMK I+ E++ ++ + + EG+L
Sbjct: 243 VDRIVEFDVVTGEVYGERTHSMVFPASHYVTEDEDLKIAMKDIEAEMEEQVKKFKAEGKL 302

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           +EAQR+EQR  YDLEM++  G C  IENYSR+LT R  GE P TL +Y PED L+ +DES
Sbjct: 303 IEAQRIEQRTRYDLEMMQEMGYCSGIENYSRHLTHRKAGEAPYTLLDYFPEDFLIVMDES 362

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536
           HVT+PQ+  MY GD  RK +L E GFRLPS  DNRPL FEE+       I VSATPG +E
Sbjct: 363 HVTLPQLHAMYAGDRSRKVSLVENGFRLPSAFDNRPLTFEEFAARINQIIYVSATPGKYE 422

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LEQ Q  + +QIIRPTGL+DP +E+R    Q++D+  EI +  ++  R+L+T LTK+MAE
Sbjct: 423 LEQAQ-QVAQQIIRPTGLLDPEIEVRPLEGQIDDLLAEIKVRIERNERVLVTTLTKKMAE 481

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +LT+Y  E  ++VRY+HS++ T+ER EII DLR G+FDVLVGINLLREGLD+PE  L+AI
Sbjct: 482 NLTDYFTEVGVKVRYLHSDIATIERAEIIHDLRAGEFDVLVGINLLREGLDMPEVSLIAI 541

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
           LDADKEGFLRS TSLIQ IGRAARN    VI+YAD IT S++ AIDET RRRE Q  +NK
Sbjct: 542 LDADKEGFLRSDTSLIQIIGRAARNARGHVIMYADRITDSMKRAIDETARRREIQDGYNK 601

Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
            H I P+++ + I  +I+  L+ ++          +  L+KK  +  +K+L ++M  A+ 
Sbjct: 602 AHGITPKTIVKPIKPLIETTLVAESGGKYEVKKGSKKKLTKKDRENLIKTLTREMQQASR 661

Query: 777 NLNFEEAARIRDEIKRLKSS 796
            L FE AA +RD I  L  S
Sbjct: 662 ALEFERAAELRDMILELDGS 681


>gi|284038488|ref|YP_003388418.1| excinuclease ABC subunit B [Spirosoma linguale DSM 74]
 gi|283817781|gb|ADB39619.1| excinuclease ABC, B subunit [Spirosoma linguale DSM 74]
          Length = 673

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/664 (49%), Positives = 466/664 (70%), Gaps = 11/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L+KG++  E  Q+LLGVTGSGKTFT+A +I    RP +V++
Sbjct: 3   FKLTSEFQPTGDQPKAIEKLVKGVNEGEPAQVLLGVTGSGKTFTIANLIARTNRPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+  T+TYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPENAVEYFISYYDYYQPEAYIATTNTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +L+  R D IVV+SVSCIYG+G+ E + + +V++ +G+ + +   L  LV   Y R
Sbjct: 123 AATSALMSGRRDVIVVASVSCIYGMGNPEEFKRNVVRIGVGEQMSRNNFLHQLVSILYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +    RG FRV GD+++++ ++  D A+RV  FG++IE I    P TG+K+     + I
Sbjct: 183 TEGEFQRGNFRVKGDTVDLYVAY-ADFAYRVIFFGDEIETIQRIDPGTGKKLSEESMVTI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VT R TLN A+  I++++  ++   E E R +EA R+ +R  +DLEM+   G C
Sbjct: 242 FPANLFVTGRDTLNGAIYQIQDDMVAQVRYFESELREMEATRIRERTEFDLEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY   R PG+ P  L +Y P+D L+ VDESHVTIPQI  M+ GD  RK  L +
Sbjct: 302 SGIENYSRYFDKRLPGQRPFCLLDYFPDDFLMVVDESHVTIPQIRAMWGGDRSRKTALVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS MDNRPL F+E+  L   +I VSATP  +EL + +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPSAMDNRPLTFQEFEDLSGQSIYVSATPSDYELRKSEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ + I+   ++G R+L+T LTKRMAE+LT+YL    I+ RY+HSEVKTL
Sbjct: 422 EVRPSLNQIDDLLEAIDGRIKRGERVLVTTLTKRMAEELTKYLDRVGIKTRYIHSEVKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EI+RDLRLG FDVLVG+NLLREGLD+PE  LVAI+DADKEGFLR   SLIQTIGRAA
Sbjct: 482 DRVEILRDLRLGNFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRDIRSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N KVI+YAD IT S+Q AIDET RRR  QLE+N  + I P +V +    ++    + 
Sbjct: 542 RNANGKVIMYADRITGSMQKAIDETNRRRAIQLEYNTDNGITPTTVLKSRESIMGQTKVA 601

Query: 740 DAATTNISIDAQQLSLS-----KKKGKAHLKSL----RKQMHLAADNLNFEEAARIRDEI 790
           D+   +  ++ +++ ++     +  GK  L+ +    + +M  AA +L+F EAAR+RDE+
Sbjct: 602 DSKAKHFYVEPEEIRIAADPVVRYMGKGDLEKIIQETQSKMERAAKDLDFMEAARLRDEL 661

Query: 791 KRLK 794
            +L+
Sbjct: 662 FQLR 665


>gi|225351877|ref|ZP_03742900.1| hypothetical protein BIFPSEUDO_03479 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157124|gb|EEG70463.1| hypothetical protein BIFPSEUDO_03479 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 711

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/683 (51%), Positives = 469/683 (68%), Gaps = 31/683 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AI +L + I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 20  FVVKSPYKPSGDQPKAIEELAERIENGENDVVLMGATGTGKTATTAWLIERLQRPTLIIE 79

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 80  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 139

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ L+ G  +++ +LL + V  QYKR 
Sbjct: 140 AATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLEEGQQIDRDDLLRTFVAMQYKRN 199

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I     + I+
Sbjct: 200 DIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIGRQSQVHIF 258

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I++EL  R  EL K+G+ LEAQRL  R TYDLEML   G C 
Sbjct: 259 PASHYVAGPQRMERALSTIQQELDQRTAELRKQGKELEAQRLTMRTTYDLEMLSQVGVCS 318

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 319 GVENYSRHFDGREPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 378

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G+ VEQIIRPTGLVDP ++
Sbjct: 379 GFRLPSAMDNRPLKWPEFLERVGQTVYLSATPGDYELGLSDGV-VEQIIRPTGLVDPQID 437

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL 
Sbjct: 438 VRPVDGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 497

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 498 RVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 557

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD IT+++  AIDET RRR+ Q+ +NK+H I+P+ + +KI +V D +  ED
Sbjct: 558 NVSGTVIMYADDITEAMHKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDVNDMLAKED 617

Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771
                           A  +++ + A     S ++ +  LK+             L +QM
Sbjct: 618 VDTQTLLGTGYRNEGKAGNSHLGVPATSKEESDRRHEEILKAGLPAQDLADLIRQLSEQM 677

Query: 772 HLAADNLNFEEAARIRDEIKRLK 794
             AA+ L FE AAR+RDEI+ LK
Sbjct: 678 RAAAEQLQFELAARLRDEIRDLK 700


>gi|313895915|ref|ZP_07829469.1| excinuclease ABC, B subunit [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975340|gb|EFR40801.1| excinuclease ABC, B subunit [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 678

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/656 (53%), Positives = 462/656 (70%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P GDQP AIA L  GI + +  Q+LLG TG+GKT+TMAKVIE +QRP +V+A
Sbjct: 18  FKVIAPFEPMGDQPHAIADLAGGIENGQTAQVLLGATGTGKTYTMAKVIERVQRPTLVIA 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK+FFP+N V YFVSYYDYYQPEAY+ +TDTYIEK++SIN++ID +RH
Sbjct: 78  HNKTLAAQLASEFKSFFPNNYVGYFVSYYDYYQPEAYIAQTDTYIEKDASINDEIDELRH 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+GS ESY +M++ +  G ++ ++E+L  LV  +Y+R 
Sbjct: 138 SATCSLFERRDVIIVASVSCIYGLGSPESYHEMVLSVHKGQTIPREEILQKLVSIRYERN 197

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   +   R+ MFG+++E I EF  ++G+         ++
Sbjct: 198 DIAFERGRFRVRGDVVEIFPAGYNNRGVRIEMFGDEVERIIEFDVVSGEIYGERLHSMVF 257

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    +  AM  I+ EL+ +L  L+ EG+LLEAQRLEQR  YDLEM++  G C 
Sbjct: 258 PASHYVTEDEDMKIAMADIRTELEEQLAMLKGEGKLLEAQRLEQRTNYDLEMMQEMGYCS 317

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  GE P TL +Y PED L+ +DESHVT+PQI  MY GD  RK +L + 
Sbjct: 318 GIENYSRHLTHRKAGETPYTLLDYFPEDFLIMIDESHVTLPQIHAMYGGDRSRKVSLVDN 377

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F+E+       + VSATPG +E++Q Q  + +QIIRPTGL+DP VE
Sbjct: 378 GFRLPSAFDNRPLTFDEFAARVNQIVYVSATPGKYEMQQAQ-QVTQQIIRPTGLLDPVVE 436

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI L  ++  R+L+T LTKRMAE LT+YL E  ++VRY+HS++ T+E
Sbjct: 437 VRPLDGQIDDLLSEIRLRIERRERVLVTTLTKRMAEHLTDYLREAGVKVRYLHSDIATIE 496

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EII DLR G+FDVLVGINLLREGLD+PE  L+AILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 497 RAEIIHDLRAGEFDVLVGINLLREGLDMPEVSLIAILDADKEGFLRSDTSLIQTIGRAAR 556

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+Y D +T S++ AIDET RRRE Q  +NK+H I P+++ + ++ +I+  L+  
Sbjct: 557 NASGHVIMYGDVVTGSMRRAIDETERRREIQEAYNKEHGIVPKTIVKPVVPLIEMTLVAA 616

Query: 741 AATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T        +     KK + +L KSL ++M  A+  L FE AA +RD I  L+ 
Sbjct: 617 EGTAPYGKKDGKKKKLGKKERENLVKSLLREMQQASRALEFERAAELRDMIVELEG 672


>gi|154174543|ref|YP_001408491.1| excinuclease ABC subunit B [Campylobacter curvus 525.92]
 gi|112802728|gb|EAU00072.1| excinuclease ABC, B subunit [Campylobacter curvus 525.92]
          Length = 659

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/658 (50%), Positives = 452/658 (68%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PS DQ  AI  ++K I S  K   LLGVTGSGKTFTMA VI  +  P ++M 
Sbjct: 4   FEISSKFSPSPDQARAIENIVKSIKSGNKYNTLLGVTGSGKTFTMANVIRELNMPTLIMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+N VEYF+SYYDYYQPEAY+PR+D YIEK+SS+NE+++RMR 
Sbjct: 64  HNKSLAAQLYSEFKGFFPNNHVEYFISYYDYYQPEAYIPRSDLYIEKDSSVNEELERMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL  ND I V+SVS  YG+G+   Y  M+  L +G+ + Q+ LL+ LV   YKR 
Sbjct: 124 SATASLLSFNDVICVASVSANYGLGNPSEYQGMVAYLNVGERLNQRNLLTKLVDMGYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD ++I+P++  D A RV  FG++IE +  F  L  +K+++V    +Y
Sbjct: 184 DAYFDRGDFRVNGDVVDIYPAYYNDEALRVEFFGDEIEAMYHFDVLDNKKLKDVGKFTLY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A S ++     L  A+K I++EL  RL E    G+L+EAQRL+QR+ +DLEM+ +TG C+
Sbjct: 244 ATSQFIVGADRLKVAIKDIEKELDERLGEFNAAGKLVEAQRLKQRVEFDLEMMSSTGMCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYI----PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
            IENY+R+LTG+ PGE P ++F+Y       + L+ VDESHV++PQ  GMY GD  RK  
Sbjct: 304 GIENYARHLTGQKPGETPYSMFDYFELLNSGEYLVIVDESHVSLPQFRGMYAGDRSRKEV 363

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPL+F+E+   +   + VSATP   EL    G + EQI+RPTGL+D
Sbjct: 364 LVEYGFRLPSALDNRPLKFDEFINKKAKFLFVSATPNELELNLSSGHVYEQILRPTGLLD 423

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EI+ +  QVE ++DE     ++  R+L+TVLTK+MAE+L+ Y  E  ++V+YMHS++
Sbjct: 424 PLIEIKDSDNQVEILFDEAKKVIERNERVLVTVLTKKMAEELSRYYTELGVKVKYMHSDI 483

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
             +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+G
Sbjct: 484 DAIERNEIIRGLRGGDFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMG 543

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN +V+++A  ITKS+Q A+D T  RR+ Q E+NK H I P+S    I E +   
Sbjct: 544 RAARNVNGRVLMFAKKITKSMQEAMDTTNARRKLQDEYNKAHGITPRSASRNIEESLH-- 601

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +ED   T       +   + ++ K  +K LRKQM  AA  L FE+AA +RDEI +++
Sbjct: 602 -IEDEGETYRKAKNLEKMPAAERAKI-VKELRKQMLEAAAQLEFEKAATLRDEIAKIR 657


>gi|88602451|ref|YP_502629.1| excinuclease ABC subunit B [Methanospirillum hungatei JF-1]
 gi|88187913|gb|ABD40910.1| Excinuclease ABC subunit B [Methanospirillum hungatei JF-1]
          Length = 642

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/663 (51%), Positives = 452/663 (68%), Gaps = 31/663 (4%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T FQ+ +++ P+G QP AI QL++G  S    Q LLGVTGSGKTFTMA VIE +Q P +
Sbjct: 1   MTEFQLVSNFKPTGSQPDAIRQLVEGFKSGSSFQTLLGVTGSGKTFTMANVIEQLQIPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLY EF++FFP+N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +I+ 
Sbjct: 61  VIAHNKTLAAQLYHEFRDFFPNNRVEYFVSYYDYYQPESYIPKKDQYIEKDAQINPKIEM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT SLL RND IV++SVSCIYG+G  ++Y +M   L +G  + ++E++S LV   Y
Sbjct: 121 MRLSATASLLSRNDVIVIASVSCIYGLGRPDTYKRMGFDLGVGQKISRREIISRLVDNLY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R +I II G FRV GD I++ PS+  ++  R+ +FG+++E I+E    TG  +  +  +
Sbjct: 181 ERNEIEIIPGRFRVKGDIIDLVPSYYNNI-IRIELFGDEVERITEINRTTGNPVERLRHV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  SHYV        A+  I++EL  RL  L     +LE+ RL QR  YD+EM+  TG
Sbjct: 240 YVYPASHYVIDESQKEKALLEIEKELNERLPHLG----MLESHRLRQRTMYDIEMIRETG 295

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC+ IENYSR+  GR PGE P  L +Y PE  L+F+DESH T+PQ+  M+ GD  RK  L
Sbjct: 296 SCKGIENYSRFFDGRKPGEKPYCLLDYFPERFLIFIDESHQTLPQVRAMFHGDRSRKTPL 355

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPLRF E+       I VSATPG +EL+     +VEQIIRPTGLVDP
Sbjct: 356 VEYGFRLPSAFDNRPLRFFEFEQYLKNVICVSATPGDYELDHSTQ-VVEQIIRPTGLVDP 414

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R  + Q+E++  EI    ++G RIL+T LTKR+AE+LTEYL    ++ RY+HS++ 
Sbjct: 415 VVEVRPIQGQMENIKFEIQRTIERGDRILITTLTKRLAEELTEYLLSHGVKTRYLHSDID 474

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIR+LRLG FDVLVGINLLREGLDIPE G + ILDADKEGFLR   SLIQ IGR
Sbjct: 475 TLERTEIIRELRLGSFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDARSLIQIIGR 534

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN ++ V+LYADT+T S+Q AIDET RRR  Q+E+N  H I P+++++ + +      
Sbjct: 535 AARNSDAFVVLYADTVTGSMQKAIDETERRRALQIEYNTSHGITPKTIQKPVRD------ 588

Query: 738 LEDAATTNISIDAQQLSLSKKKG--KAHLK----SLRKQMHLAADNLNFEEAARIRDEIK 791
                        Q++ L KKK   K+ L     +L  QM  AA  L+FEEA R+RD++ 
Sbjct: 589 -------------QEIDLGKKKKVPKSALPNLIINLESQMRSAAQRLDFEEAIRLRDQLT 635

Query: 792 RLK 794
            L+
Sbjct: 636 ALR 638


>gi|169837276|ref|ZP_02870464.1| excinuclease ABC subunit B [candidate division TM7 single-cell
           isolate TM7a]
          Length = 612

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/597 (54%), Positives = 430/597 (72%), Gaps = 2/597 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y P+GDQP AI  L  G+   ++ Q LLGVTGSGKTFTMA +I   Q P +V+A
Sbjct: 3   FKLKSKYKPTGDQPEAIKSLTAGLSRGDREQTLLGVTGSGKTFTMANIIANYQAPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP N V YFVSY+DYYQPEAY+  +DTYIEK+S IN++IDR+RH
Sbjct: 63  HNKTLAAQLYSEFKQFFPENEVHYFVSYFDYYQPEAYIASSDTYIEKDSKINDEIDRLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R+D I+V+SVSCIYGIGS ++Y+ M + +K+G+   Q + +  L   QY+R 
Sbjct: 123 AATTALLTRSDTIIVASVSCIYGIGSPDTYADMSINIKMGEHRRQDKFIRQLTDIQYQRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD ++IFP+ + D A+R+  FGN+++ I+   PLTG+       I I+
Sbjct: 183 DIDFDRGIFRVKGDVVDIFPAGM-DQAYRIEFFGNEVDRITRLNPLTGEITGEPRQISIF 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHY TP+  +  A++ IK+E + RL   E+  + LEAQRL QR  YDLEMLE TG  +
Sbjct: 242 PNSHYATPKEMIMKAIEGIKKEFEDRLAWFERNHKFLEAQRLSQRTKYDLEMLEQTGFVK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+ R  GE P TL +Y P+D LL VDESH+T+PQ+ GMY GD  RK  L E+
Sbjct: 302 GIENYSRYLSNREQGEQPATLIDYFPDDWLLLVDESHMTLPQVRGMYNGDRARKEVLVEH 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       I +SATPG +EL Q    +  QIIRPTGL+DP ++
Sbjct: 362 GFRLPSALDNRPLKFEEFYNHINQAIYISATPGDYEL-QHSSTLARQIIRPTGLLDPEID 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  EI     +  R+L+T LTKRMAEDL+ YL E  I+  Y+HSE+ TLE
Sbjct: 421 IRPTEGQVDDLIKEIRDRINKKQRVLVTTLTKRMAEDLSTYLQELGIKTAYIHSEIDTLE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +I+RDLR G +DVLVGINLLREGLD+PE  LVAI+DADKEGFLRS+++LIQTIGRAAR
Sbjct: 481 RGDILRDLRSGVYDVLVGINLLREGLDLPEVSLVAIMDADKEGFLRSESALIQTIGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           +V  KV++Y D IT+S++LAIDET  RR+ Q ++N ++NI P+ V + I E +  I+
Sbjct: 541 HVEGKVLMYGDVITRSMRLAIDETNSRRKLQQQYNLENNITPRGVDKAIDEGLRAII 597


>gi|307718238|ref|YP_003873770.1| UvrABC system protein B [Spirochaeta thermophila DSM 6192]
 gi|306531963|gb|ADN01497.1| UvrABC system protein B [Spirochaeta thermophila DSM 6192]
          Length = 661

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/657 (52%), Positives = 468/657 (71%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P+GDQ  AIA L +G+    + Q L GVTGSGKTFTMAK++E +Q P +V++
Sbjct: 4   FRVEAPFGPAGDQGKAIALLSEGVKKGYRYQTLKGVTGSGKTFTMAKIVEEVQLPTLVIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYV   D YIEK++SINE+IDR+R 
Sbjct: 64  HNKTLAAQLYREFKEFFPHNAVEYFVSYYDYYQPEAYVASKDLYIEKDASINEEIDRLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ER D IVV++VSCIYG+G+ E + +M V++ +G  ++   L   LV  QY+R 
Sbjct: 124 SATASLMERPDVIVVATVSCIYGLGNPEHFREMRVRIDVGQHLDLGMLKQQLVSLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGTFRV G+ ++I+P++LE V +RV +  +++  I   +PLT + +   +++ +Y
Sbjct: 184 DAVLTRGTFRVRGEVVDIYPAYLEHV-YRVELDWDEVVSIKVVHPLTLEVLDERKSLFVY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V P   + +A++ I+EEL+ R  EL  + +L+EAQRL+ R  YDLEMLE  G C 
Sbjct: 243 PAKHFVLPEEQIRSAIQGIREELEERYRELLSQNKLVEAQRLKARTEYDLEMLEEMGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PG+ P  L +Y P+  L+F+DESHVT+PQ+  MY GD  RK +L EY
Sbjct: 303 GIENYSRHLSGRKPGQRPAVLLDYFPDRFLVFIDESHVTLPQLKAMYEGDRSRKLSLVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR+EE+  + P  I VSATP   EL +    +VEQIIRPTGL+DP VE
Sbjct: 363 GFRLPSALDNRPLRYEEFEAIVPQVIYVSATPEEEELSKSSQ-VVEQIIRPTGLLDPEVE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+Y EI    ++G R+L+T LTK+MAEDLT+YL    +RVRY+H+EV+T+E
Sbjct: 422 VRPTEGQIDDLYAEIRKRVEKGQRVLVTTLTKKMAEDLTDYLQSLGLRVRYLHAEVETIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++RDLR G+FDVLVGINLLREGLD+PE  LVAILDADK GFLRS TSLIQ +GRAAR
Sbjct: 482 RVELLRDLRAGEFDVLVGINLLREGLDLPEVALVAILDADKIGFLRSATSLIQIMGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738
           N   KVI+YAD +T +++ AI+ET RRR  Q  +N++H I PQ++++ + ++++  +   
Sbjct: 542 NAEGKVIMYADRVTDAMREAIEETRRRRTIQEAYNREHGITPQTIQKSVRDILERKMKVK 601

Query: 739 EDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+     I +     + L   + K  ++ L K+M   A NL FE AA IRDEI RLK
Sbjct: 602 EEVERKEIEVLVHGYNILVPSERKKLIQRLEKEMLERAKNLEFEMAAVIRDEIARLK 658


>gi|228469698|ref|ZP_04054666.1| excinuclease ABC subunit B [Porphyromonas uenonis 60-3]
 gi|228308717|gb|EEK17443.1| excinuclease ABC subunit B [Porphyromonas uenonis 60-3]
          Length = 677

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/671 (50%), Positives = 454/671 (67%), Gaps = 19/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI+ + RP +V++
Sbjct: 3   FQLTSKYKPTGDQPEAIAQLSQGVRDGLPHQTLLGVTGSGKTFTIANVIQQVDRPTLVIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+  TDTYIEK+ +IN ++D++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLINTDTYIEKDMAINAELDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVV+SVSCIYG+ +   +   I++L++G  +E+  L+  L +  Y  
Sbjct: 123 RATASLLSGRRDVIVVASVSCIYGMANPNDFENKIIKLEVGMQIERDALMRRLAESYYVN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
                + G+FRV GD+I+IFP+    E VA+R+ ++  +I+ I+   P++ +    ++ +
Sbjct: 183 NKADFVSGSFRVKGDTIDIFPAIESFEGVAYRIELWDEEIDRITIIDPISAESQGTLDNL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           +IY  + +VT       A+  IK++L  R  ELE+EG L EA+RL +R++YDLEM++  G
Sbjct: 243 RIYPANLFVTTEEQTQRAIVEIKKDLGDRTAELEREGHLFEAKRLYERVSYDLEMIKAVG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR PGE P  L +Y P+D LL +DESHV+IPQI  MY GD  RK TL
Sbjct: 303 YCSGIENYSRYFDGRKPGERPFCLMDYFPDDYLLVIDESHVSIPQIRAMYGGDRARKTTL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP+ +DNRPL F E+  L    I VSATP  +EL   +G++VEQ+IRPTGL+DP
Sbjct: 363 VEYGFRLPAALDNRPLEFSEFVNLTNQVIYVSATPADYELNMSEGVVVEQVIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+EIR    QV+D+ +EI +  ++  R L+T LTKRMAE+L++YL    I+  Y+HS+V 
Sbjct: 423 PIEIRPTEHQVDDLMEEIVIRTERNERTLVTTLTKRMAEELSDYLIRAGIKCAYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERI+I+  LR G +DVLVG+NLLREGLD PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERIQIMDSLREGAYDVLVGVNLLREGLDFPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+  VI YAD+IT S+Q  IDET RRR KQ+ +N++H+I P  V  K    +    
Sbjct: 543 AARNVHGLVIFYADSITDSMQATIDETNRRRAKQIAYNEEHHITPTQVVSKRTNALSQ-- 600

Query: 738 LEDAATTNISIDAQQLS-------------LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
            E   TT  S  A+                L++ K    ++ +RKQM+ AA  LNF EAA
Sbjct: 601 -EGYVTTKSSAQAEAYVEEEIAVASPVAEYLTQDKLPELIEQVRKQMYAAAKELNFVEAA 659

Query: 785 RIRDEIKRLKS 795
           R+RDE+  L+S
Sbjct: 660 RLRDEMYALQS 670


>gi|288818056|ref|YP_003432403.1| excinuclease ABC subunit B [Hydrogenobacter thermophilus TK-6]
 gi|288787455|dbj|BAI69202.1| excinuclease ABC subunit B [Hydrogenobacter thermophilus TK-6]
 gi|308751657|gb|ADO45140.1| excinuclease ABC, B subunit [Hydrogenobacter thermophilus TK-6]
          Length = 663

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/654 (50%), Positives = 451/654 (68%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +QT   P+GDQP AI +LL  +    K Q+LLG TG+GKTFT+A +I    +P +V+A
Sbjct: 7   FVLQTSLKPAGDQPKAIEELLNNLERGVKEQVLLGATGTGKTFTLANLIAQYNKPTLVIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK+LAAQLY EFK  FP+NAVEYF+SYYDYYQPEAY+P  D YIEK++SIN+ ++R RH
Sbjct: 67  HNKVLAAQLYREFKELFPNNAVEYFISYYDYYQPEAYIPEKDLYIEKDASINQVLERYRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT S+LER D IVV+SVSCIYG+GS   Y  M ++L++G+ +   +LL  LV+  Y+R 
Sbjct: 127 SATISVLERRDVIVVASVSCIYGLGSPHHYYSMRIKLRVGERISTSKLLRKLVELGYQRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TF V  +++E+ PS  ED   R+  + ++IE I+    L    I  +E   I+
Sbjct: 187 DYTYKRATFSVRANALEVIPSDAEDRIVRIEFWDDEIERITLIDALNRHTIGELEEFTIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHY+ PR T+  A+  I+ +L  R+   + +G+ LEA+RL QR  YDLEM+   G C+
Sbjct: 247 PSSHYIAPRSTVEDALLQIERDLIERVKWFKNQGKELEARRLYQRTMYDLEMIREIGHCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY  GR PGEPP TL +Y P+D LL +DESHVT+PQI  MY GD  RK  L EY
Sbjct: 307 GIENYSRYFDGRKPGEPPFTLLDYFPKDFLLIIDESHVTVPQIRAMYNGDRSRKEKLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           G+RLPS +DNRPL+FEE+       I VSATPG WE+++ +GIIVEQI+RPTGL+DP VE
Sbjct: 367 GWRLPSALDNRPLKFEEFLERINQVIYVSATPGDWEIQRSRGIIVEQIVRPTGLLDPEVE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q+ED+  EI +  ++  R ++   TKR+AE++ +YL ER +  +YMHS++  +E
Sbjct: 427 VRPTRGQLEDLLREIQIRKKRNERAIVLTTTKRLAEEVADYLTERGVSAKYMHSDLDAIE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  II+DLR G  DV+VG+NLLREGLD+PE  LVAILDADKEGFLRS TSLIQ IGRAAR
Sbjct: 487 RARIIKDLREGSIDVIVGVNLLREGLDLPEVSLVAILDADKEGFLRSYTSLIQIIGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD +T+S++ AI+ET RRREKQ +HN  H I P+S+   +  V D + +E+
Sbjct: 547 NINGKAILYADRMTESMKRAIEETRRRREKQRKHNHLHGITPRSI---VKPVKDLLSIEE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                +  +  +   S++     ++ L ++M   A    FE+AA++RDEIK+L+
Sbjct: 604 LDYVKVPSEIPKGIKSEEDIIRRIEKLEREMLECAKKWEFEKAAKLRDEIKKLR 657


>gi|89890826|ref|ZP_01202335.1| UvrABC excinuclease ABC subunit B (helicase subunit of the DNA
           excision repair complex) [Flavobacteria bacterium BBFL7]
 gi|89516971|gb|EAS19629.1| UvrABC excinuclease ABC subunit B (helicase subunit of the DNA
           excision repair complex) [Flavobacteria bacterium BBFL7]
          Length = 666

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/662 (50%), Positives = 462/662 (69%), Gaps = 12/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+++ P+GDQP AI  L+ GI++ ++ Q LLGVTGSGKTFT A VI+  QRP ++++
Sbjct: 3   FKIQSEFKPTGDQPKAIKSLVDGINNGDQYQTLLGVTGSGKTFTAANVIQETQRPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEA++P + TYIEK+ SINE I++MR 
Sbjct: 63  HNKTLAAQLYSEMKAFFPDNAVEYFVSYYDYYQPEAFIPSSGTYIEKDLSINEDIEKMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T +LL  R D IVV+SVSC+YGIG+   + + +++LK  + + + +LL  LV+  Y R
Sbjct: 123 STTSALLSGRRDVIVVASVSCLYGIGNPVEFQKNVIRLKRDEVIARTQLLHKLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RG FR+ GD+I++FPS+  D A+++  FG++IE I  F P+ G+ +   + I I
Sbjct: 183 TTADFNRGNFRINGDTIDVFPSY-ADYAFKIHFFGDEIELIETFNPVDGRLMEQWQEITI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+E+L  ++   ++ G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLQNAIHSIQEDLVKQVDYFKEIGKPLEAKRLQERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y PED L+ +DESHVT+PQ+S MY GD  RK  L +
Sbjct: 302 SGIENYSRYLDGRLPGTRPFCLLDYFPEDFLMVIDESHVTVPQVSAMYGGDRSRKENLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   + VSATP  +EL + +G+  EQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEMLQNQVLYVSATPADYELAKTEGVYTEQIIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R ++ Q++D+ +EI+   +   R+L+T LTKRMAE+LT+YL   +IR RY+HS+V TL
Sbjct: 422 EVRPSQNQIDDLVEEIHKRVELDERVLVTTLTKRMAEELTKYLSRISIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+ I+ DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR+  SL QTIGRAA
Sbjct: 482 ERVAIMHDLRSGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRNNRSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN   ILYAD IT S+Q  ID+T  RR KQ+ +N+ H + P ++K+ +   +     +
Sbjct: 542 RNVNGLAILYADKITNSMQETIDQTEYRRSKQIAYNETHGLKPMAIKKSLETALTK---K 598

Query: 740 DAATTNI-------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             AT  I       + + +   LSK+K +  ++  RKQM  AA  L+F EAAR+RD+IK 
Sbjct: 599 REATYTIEKSLNLAAAEEEATYLSKEKLEQKIRDTRKQMEKAAKELDFMEAARLRDQIKM 658

Query: 793 LK 794
           L+
Sbjct: 659 LQ 660


>gi|34558250|ref|NP_908065.1| excinuclease ABC subunit B [Wolinella succinogenes DSM 1740]
 gi|81832798|sp|Q7M806|UVRB_WOLSU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|34483969|emb|CAE10965.1| EXINUCLEASE ABC SUBUNIT B [Wolinella succinogenes]
          Length = 658

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/658 (51%), Positives = 463/658 (70%), Gaps = 7/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L + I ++ + Q L+GVTGSGKT+TMAK+IE +Q P ++M 
Sbjct: 4   FKVHSPYEPAGDQPQAIEKLAQSIQTQHRYQTLVGVTGSGKTYTMAKIIEKLQIPTLIMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEF+ FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSINE+++R+R 
Sbjct: 64  HNKTLAAQLYSEFRGFFPKNHVEYFISHFDYYQPEAYIPRQDLFIEKDSSINEELERLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL   D IVV+SVS  YG+GS   Y QMI +L++G+ + Q+ELL  LV+  YKR 
Sbjct: 124 SATTSLLAHEDVIVVASVSANYGLGSPAEYVQMIQKLEVGERLHQRELLLRLVEMGYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV G+ I+I+P++ ED   RV  FG++IE I+    +  Q +  + +  +Y
Sbjct: 184 DNFFDRGDFRVNGEVIDIYPAYSEDEVVRVEFFGDEIERIALLDSVDRQALGELPSYILY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A + ++  +  L+ A+K I+ EL+ RL   +KEGR++E  RL+QR  +DLEM+  TG C+
Sbjct: 244 AANQFIVGQNRLHEALKTIESELEERLAFYQKEGRMVEHARLKQRTEFDLEMIGATGICK 303

Query: 441 SIENYSRYLTGRNPGEPPPTL---FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENYSR+LTG+  GE P +L   FE+  +  L+ VDESHV++PQ  GMY GD  RK  L
Sbjct: 304 GIENYSRHLTGKKVGETPYSLLDYFEFKGKPYLIIVDESHVSLPQFGGMYAGDRSRKEVL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL +EE+    P  + VSATP   ELE  Q  I EQI+RPTGL+DP
Sbjct: 364 VEHGFRLPSALDNRPLTYEEFITKAPHYLFVSATPAPRELELSQAQIAEQIVRPTGLLDP 423

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
             E+R ++ QV  ++DEI     +G R+L+T LTK+MAE+LT+Y  +  I+VRYMHSE+ 
Sbjct: 424 LYEVRDSQNQVAALFDEIKAVVARGERVLITALTKKMAEELTKYYADLGIKVRYMHSEID 483

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER +IIR LR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT+GR
Sbjct: 484 AIERNQIIRGLRTGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMGR 543

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N +V+L+A  IT S++ A++ T  RR KQ E N+KH I P+SV  K+ E    + 
Sbjct: 544 AARNLNGRVLLFAQKITPSMKRAMEVTDYRRSKQQEFNQKHGITPKSVTRKLDE---ELR 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           LE           ++  + K + +  +K + K+MH AA  L+FEEAAR+RDEI ++++
Sbjct: 601 LEGVGDLYAKASKKE-KIPKAEREKIIKEMTKKMHEAAKLLDFEEAARLRDEIAKIRA 657


>gi|293375597|ref|ZP_06621871.1| excinuclease ABC, B subunit [Turicibacter sanguinis PC909]
 gi|325836778|ref|ZP_08166245.1| excinuclease ABC, B subunit [Turicibacter sp. HGF1]
 gi|292645814|gb|EFF63850.1| excinuclease ABC, B subunit [Turicibacter sanguinis PC909]
 gi|325491156|gb|EGC93445.1| excinuclease ABC, B subunit [Turicibacter sp. HGF1]
          Length = 657

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/655 (52%), Positives = 460/655 (70%), Gaps = 9/655 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL++ I    K Q+LLG TG+GKTFT+A V++A+ +P +V+A
Sbjct: 6   FEIVSKYSPSGDQPKAIKQLVENIEHGVKEQVLLGATGTGKTFTIANVVQAVNKPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++  N++ID++RH
Sbjct: 66  HNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAKTNDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYGIG  E Y  M+V +++G  +E+ +LL  LV+ QY+R 
Sbjct: 126 SATAALLERNDVIVVASVSCIYGIGDPEEYKSMMVSIRVGMEMERNDLLKELVRIQYQRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EI P   E  A R+  FG +++ I E   LTG+ +   + + I+
Sbjct: 186 DIDFHRGTFRVRGDIVEILPIATEKNAIRIEFFGEEVDRIREIDTLTGEVLSERKHVVIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+K I+EEL+ ++   + E +L+EAQR+EQR  YDLEM+   G C 
Sbjct: 246 PASHFVTGEERMKIALKNIEEELEQQIEYFKSEEKLIEAQRIEQRTRYDLEMMAEMGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS  L+ R  G  P  L ++ P+D LL  DESHVT+PQ+ GMY GD  RK TL  +
Sbjct: 306 GVENYSGPLSLRERGATPYCLLDFFPDDWLLVADESHVTLPQVRGMYNGDRARKETLVNH 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+       I VSATPG +EL +    +VEQIIRPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLQFNEFEEKIHQAIYVSATPGDYELARTDK-VVEQIIRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +  +R Q++ +  EI    ++  R+L+T LT +M+E+LT YL E  I+V Y+HSE+KTLE
Sbjct: 425 LHPSRGQIDHLVGEIYKRIEKNERVLVTTLTIKMSEELTNYLKELGIKVAYLHSEIKTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RIEIIRDLRVGTYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VILYAD +T S+Q AI+ET+RRRE Q   N++H I P ++++ + +VI       
Sbjct: 545 NADGRVILYADKMTGSMQRAIEETSRRREIQENFNEEHGIIPMTIRKDVRDVI------- 597

Query: 741 AATTNISIDAQ-QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            AT  +  +A+    +S+K  +  +  L K+M  AA  L+FE AA +RD +  LK
Sbjct: 598 RATEVVEKEAKYDKKMSRKDKEKLMAKLEKEMKEAAKALDFETAATLRDAMLELK 652


>gi|325285016|ref|YP_004260806.1| UvrABC system protein B [Cellulophaga lytica DSM 7489]
 gi|324320470|gb|ADY27935.1| UvrABC system protein B [Cellulophaga lytica DSM 7489]
          Length = 661

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/662 (50%), Positives = 458/662 (69%), Gaps = 13/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L+KG++  EK Q LLGVTGSGKTFT+A V+E +Q+P +V+A
Sbjct: 3   FKVVSKFEPTGDQPQAIKELVKGVNEGEKHQTLLGVTGSGKTFTVANVVEKVQKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P T T+IEK+ SINE I+++R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPTTGTFIEKDLSINEDIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT SLL  R D IV++SVSC+YGIG+   + + ++ +K    + + + L  LV+  Y R
Sbjct: 123 SATSSLLSGRRDVIVIASVSCLYGIGNPVEFQKNVISIKRDQVISRTKFLHQLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                  G FRV GD +++FPS+  D A+R+  FG++IEEI  F PL  + +   E + I
Sbjct: 183 TTEDFRNGNFRVKGDVVDVFPSY-ADHAFRIHFFGDEIEEIEAFDPLHNKVLEVYENLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+ ++  ++   ++ G+ LEA+RLE+R T+DLEM+   G C
Sbjct: 242 YPANMFVTSPDILQNAIHAIQADMVKQVDYFKEIGKHLEAKRLEERTTFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ +DESHVT+PQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGRLPGTRPFCLLDYFPDDYLMVIDESHVTVPQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  ++   I VSATP  +EL+   G+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEMIQNQVIHVSATPADYELQLSGGVYVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR +  Q++D+ +EI+L  ++  R L+T LTKRMAE+L +YL   ++R RY+HS+V TL
Sbjct: 422 EIRPSLNQIDDLVEEIHLRIEKDERTLVTTLTKRMAEELAKYLDRISVRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSARSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K I+YAD IT S+Q  IDET  RRE+Q+ +N KHN  P ++ +     +D  L +
Sbjct: 542 RNVNGKAIMYADKITASMQKTIDETNYRRERQIAYNTKHNKKPMALNKS----LDSALSQ 597

Query: 740 DAATT-------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           ++ +T         + +     L+  +    ++  RK M  AA  L+F EAA++RDEIK 
Sbjct: 598 NSVSTYHFEKEEARAAEPDMAYLTTDQKDKMIREKRKAMEKAAKELDFMEAAKLRDEIKA 657

Query: 793 LK 794
           L+
Sbjct: 658 LQ 659


>gi|108804843|ref|YP_644780.1| excinuclease ABC subunit B [Rubrobacter xylanophilus DSM 9941]
 gi|108766086|gb|ABG04968.1| Excinuclease ABC subunit B [Rubrobacter xylanophilus DSM 9941]
          Length = 625

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/623 (54%), Positives = 449/623 (72%), Gaps = 10/623 (1%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGSGKT TMA+VIE + RPA+V+A NK LAAQL SEF  FFP+NAVEYFVSYYDYYQPE
Sbjct: 1   MTGSGKTHTMARVIEKVGRPALVIAHNKTLAAQLASEFSEFFPNNAVEYFVSYYDYYQPE 60

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AYVP+TDT+IEK++ INE IDR+RHSAT +L  R D IVV+SVS IYG+GS E Y Q +V
Sbjct: 61  AYVPQTDTFIEKDAQINEDIDRLRHSATSALFTRRDVIVVASVSAIYGLGSPEEYRQKMV 120

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L+ G   +  ++L  LV+ QY R D  + RG FRV GD +E+ P++ +D  +R+S FG+
Sbjct: 121 LLERGGFYDLDDVLRDLVRIQYTRNDYQLSRGNFRVRGDVLEVHPAY-QDTFYRLSFFGD 179

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           ++E I E  P+TG+ +R  E++ +Y  +H+VT    L  A++ I+ EL+ R  ELE+EG+
Sbjct: 180 ELEGIMEVDPVTGEVLREPESLTVYPATHFVTGEERLRRAIEGIEAELEERYAELEREGK 239

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           +LEA RL QR  YDLEML   G C  IENYSR+L GR PG  P TL +Y PED + FVDE
Sbjct: 240 MLEAYRLRQRTQYDLEMLRELGYCSGIENYSRHLDGRPPGSTPYTLLDYFPEDYVTFVDE 299

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SH+T+PQI GMY GD  RK TL E+GFRLPS +DNRPLR+EE+       + VSATPG +
Sbjct: 300 SHITLPQIRGMYNGDRSRKETLVEHGFRLPSALDNRPLRWEEFLLKTNQLVFVSATPGPY 359

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           ELE  + + VEQIIRPTGLVDP VE+R  R Q++D+ +E++   ++  R+L+T LT +MA
Sbjct: 360 ELENSERV-VEQIIRPTGLVDPEVEVRPTRNQIDDLMNEVHRRVERNERVLITTLTIKMA 418

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL E  ++ RYMH+ ++TL+RI+IIR LR G+FDVLVGINLLREGLD+PE  LVA
Sbjct: 419 EDLTDYLLEHGVKARYMHANIETLDRIQIIRGLRTGEFDVLVGINLLREGLDLPEVSLVA 478

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLR + +LIQTIGRAARN N +VI+YADT T++++ AI ET RRR  Q+E+N
Sbjct: 479 ILDADKEGFLRGERALIQTIGRAARNANGRVIMYADTETEAMRAAIRETNRRRSIQMEYN 538

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKS----LRKQM 771
           ++H I P+++++ + +    ILL   A        ++ +    +    L+     L+ +M
Sbjct: 539 RRHGIEPRTIRKGVSD----ILLAAEARGLYRAGRRRRAAEAPRDPGELRDLIARLQAEM 594

Query: 772 HLAADNLNFEEAARIRDEIKRLK 794
             AA+ L FE AA++RDEIK L+
Sbjct: 595 MEAAEELKFEYAAKLRDEIKDLE 617


>gi|302338834|ref|YP_003804040.1| excinuclease ABC subunit B [Spirochaeta smaragdinae DSM 11293]
 gi|301636019|gb|ADK81446.1| excinuclease ABC, B subunit [Spirochaeta smaragdinae DSM 11293]
          Length = 666

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/666 (51%), Positives = 459/666 (68%), Gaps = 23/666 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY PSGDQ AAI  L  G+ +  + Q L GVTGSGKTFTMA +I   Q P +V++
Sbjct: 7   FKLVSDYAPSGDQGAAIDALADGLSNGLRYQTLKGVTGSGKTFTMANIIRRAQLPTLVLS 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E + FFP+NAVEYFVSYYDYYQPEAYVP  D YIEK+SSINE+IDR+R 
Sbjct: 67  HNKTLAAQLYRELQGFFPNNAVEYFVSYYDYYQPEAYVPSKDLYIEKDSSINEEIDRLRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ER+D IVVS+VSCIYG+GS  +Y  M V+  +G+S+        L++ QY R 
Sbjct: 127 SATSSLMERSDVIVVSTVSCIYGLGSPVAYRDMRVKATVGESLNIASFARDLIRLQYDRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGTFR+ GD +E+FP++L++ A+R+ +  +++  I   +PLTG  I  +++++IY
Sbjct: 187 DAVLERGTFRIRGDVLEVFPAYLQE-AFRMELDWDEVVRIRRIHPLTGDTIEELDSVQIY 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V P   ++TA++ I+ ELK +L   E  G+LLEAQRL  R  YDLEML+  G C 
Sbjct: 246 PAKHFVMPEEQVHTALERIRRELKDQLEYFEHRGKLLEAQRLRGRTEYDLEMLQEMGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  L+GR  G+ P  L +Y PE  L F+DESHVT+PQ+  MY GD  RK  L E+
Sbjct: 306 GIENYSAPLSGRGEGQRPAVLLDYFPEKFLTFIDESHVTLPQVGAMYEGDRSRKMNLVEH 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL + E+  L    I VSATPG  E  + +  +VEQIIRPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLFYAEFEELVDRVIYVSATPGKLEKRRSER-LVEQIIRPTGLLDPELE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q+ED+Y EI    +   R L+T LTK+M+EDLT+YL    ++VRY+HSE++T+E
Sbjct: 425 VRPTKGQIEDLYAEIRKRVECNERTLVTTLTKKMSEDLTDYLSGLGLKVRYLHSEIETIE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVL+GINLLREGLD+PE  L+AILDADK GFLRS TSLIQTIGRAAR
Sbjct: 485 RVEILRDLRLGTFDVLIGINLLREGLDLPEVSLIAILDADKIGFLRSATSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------- 733
           N + KVI+YAD I+ +++ AI ET RRR  Q  +N++H I P ++K+ + +++       
Sbjct: 545 NEHGKVIMYADRISDAMKEAIGETERRRAIQEAYNEEHGITPTTIKKAVQDILVRKKEEA 604

Query: 734 -----DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                + I +  A   NI I A++        K  ++ L + M   A NL FE+AA +RD
Sbjct: 605 KKGETETIEMVKAG-YNILIPAER--------KRLIRHLEEMMLEHAKNLEFEQAAVVRD 655

Query: 789 EIKRLK 794
           EI RLK
Sbjct: 656 EIGRLK 661


>gi|294101779|ref|YP_003553637.1| excinuclease ABC, B subunit [Aminobacterium colombiense DSM 12261]
 gi|293616759|gb|ADE56913.1| excinuclease ABC, B subunit [Aminobacterium colombiense DSM 12261]
          Length = 682

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/648 (50%), Positives = 450/648 (69%), Gaps = 6/648 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++ D+ PSGDQP AI +L++ + +  + Q LLGVTGSGKTFT+A V+    RP +V+A
Sbjct: 5   FNLKADWGPSGDQPEAIEKLVESLKNGTRFQTLLGVTGSGKTFTVANVLAQFDRPVLVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK FFPHNAV YFVSYYDYYQPEAY+P +DTYIEK++SIN++I+++R 
Sbjct: 65  HNKTLAAQLYTEFKTFFPHNAVHYFVSYYDYYQPEAYIPSSDTYIEKDASINDRIEKLRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++L+ER D IVV+SVSCIYG+G  E Y ++I    +G+  +++  +  L+   Y R 
Sbjct: 125 AATKALVERRDVIVVASVSCIYGLGKKEMYEEVIFPFAVGEKWDRRGFMERLIDNYYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ +  G FR  GD +EI+PS+ E  A RV+ F ++IE I E  P++G  ++ +    I+
Sbjct: 185 DMLLEAGKFRARGDVLEIYPSYSE-TALRVAFFDDEIERIDEIDPVSGHTLKQLPKASIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HYVT R  ++ AM  I++EL  +L  L+K+G+LLEAQRLE R  YD+EML   G C 
Sbjct: 244 PAQHYVTSRDAIDKAMGQIQQELDEQLHLLKKQGKLLEAQRLEMRTRYDMEMLAEVGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL GRNPGEPP TL ++ P+D ++ +DESH+T+PQ+ GMY GD  RK TL E 
Sbjct: 304 GIENYSRYLDGRNPGEPPGTLLDFFPDDFIMVIDESHITLPQVRGMYNGDRARKTTLVEN 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPL + E+       I +SATPG WE E     + EQIIRPTG+VDP V 
Sbjct: 364 GFRLPSCLDNRPLNWREFKKYLRQVIFISATPGDWERE-VSTCVAEQIIRPTGVVDPEVV 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +  A  QV+D+ D +     +G R L+T LTK+ +EDL EYL +   +V+Y+HSE+   E
Sbjct: 423 VSPATGQVDDLVDRLRGITARGERALVTTLTKKSSEDLAEYLADLQFKVKYIHSELNAFE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E+IRDLR G+  +LVGINLLREG+D+PE  LVAILDAD+EGFLRS  SLIQ +GRAAR
Sbjct: 483 RAELIRDLRSGEVSILVGINLLREGMDLPEVSLVAILDADREGFLRSHRSLIQIMGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +V+LYAD  T+SI+ ++ ET RRRE Q+  N+KH I PQ++ + +      +L E+
Sbjct: 543 NTRGQVVLYADVETESIRTSVQETRRRREIQMLFNEKHGIIPQTISKTVQN----LLPEE 598

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
             +  + +++++   +K+  +     L + M  A + L+FE+AA+IRD
Sbjct: 599 FTSDAVKLESRRGKRTKEVQEYTHSDLERLMWEAVEKLDFEKAAQIRD 646


>gi|291297353|ref|YP_003508751.1| excinuclease ABC subunit B [Meiothermus ruber DSM 1279]
 gi|290472312|gb|ADD29731.1| excinuclease ABC, B subunit [Meiothermus ruber DSM 1279]
          Length = 673

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/648 (51%), Positives = 454/648 (70%), Gaps = 9/648 (1%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207
            P GDQP AIA L + +   E+   LLG TG+GKT TMAKVIEA+QRPA+VMAPNK+LAA
Sbjct: 15  EPKGDQPQAIAALTEALRDGERFVTLLGATGTGKTVTMAKVIEALQRPALVMAPNKVLAA 74

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           QL +EF+  FP NAVE+F+SYYDYYQPEAYVP  D YIEK++SIN +I+R+RHS TRSLL
Sbjct: 75  QLAAEFRELFPENAVEFFISYYDYYQPEAYVPGRDLYIEKDASINPEIERLRHSTTRSLL 134

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
            R D IVV+SVS IYG+GS E Y  M + +++G    ++ L+  LV  QY+R D+ +  G
Sbjct: 135 TRRDVIVVASVSAIYGLGSPEDYKNMSLVVEVGQDCPRERLIERLVDLQYERGDLQLEAG 194

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            FR  G+ +E++P++ E    R+ +FG+ I+ ++  +P+TG++++++    +   +HY T
Sbjct: 195 RFRARGEVLEVWPAY-EQEPIRIELFGDTIDRVTVVHPVTGERLKDLPGFVLLGATHYAT 253

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
           P   L  A+  I+ EL+ RL   E EG+LLEAQRL++R  YDLEMLE  G+C  IENYSR
Sbjct: 254 PEWRLKEAIPEIRRELEERLKVFEAEGKLLEAQRLKERTLYDLEMLEVMGTCPGIENYSR 313

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
           +L+G+ PGE P TL +Y PED L+ +DESHV++PQ+ GMY GD+ RK TL +YGFRLPS 
Sbjct: 314 FLSGKTPGEAPYTLLDYFPEDYLVLLDESHVSVPQLRGMYNGDYIRKKTLVDYGFRLPSA 373

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +DNRPL+F E+       + VSATPG +ELE   G +VEQIIRPTGL+DP V ++    Q
Sbjct: 374 LDNRPLKFNEFLERVGQVVFVSATPGPYELE-VSGRVVEQIIRPTGLLDPRVTVKPTTGQ 432

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +ED+   I   A +G R L+TVLT RMAE+LT YL E  +R RY+H E+   ER  ++RD
Sbjct: 433 IEDLMGAIRTRAARGERTLVTVLTVRMAEELTAYLVEHGVRARYLHHELDAFERQALLRD 492

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LRLG FD LVGINLLREGLD+PE  LVAILDADK+GFLRS+ SLIQTIGRAARNV  +V 
Sbjct: 493 LRLGYFDALVGINLLREGLDLPEVSLVAILDADKQGFLRSERSLIQTIGRAARNVGGEVF 552

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           LYADT++ +++ AI+ET RRR  Q  +N +H I P +V++ + +++ P   E  A   + 
Sbjct: 553 LYADTVSDAMKAAIEETNRRRALQEAYNLEHGITPATVQKSVRKLVKPEDYEAEAAEAVL 612

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            D   L    ++ +        +M  A++ L+FE+AA +RD+++ L++
Sbjct: 613 DDPALLQSLLEQLET-------EMWAASEALDFEKAASLRDQMRSLEA 653


>gi|28493262|ref|NP_787423.1| excinuclease ABC subunit B [Tropheryma whipplei str. Twist]
 gi|28476303|gb|AAO44392.1| excinuclease ABC subunit B [Tropheryma whipplei str. Twist]
          Length = 677

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/673 (49%), Positives = 464/673 (68%), Gaps = 24/673 (3%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
           N H K   +F++  +Y PSGDQP AI +L   I S E   +LLG TG+GK+ T+A +IE 
Sbjct: 4   NLHPK---YFRLAAEYDPSGDQPKAIGELSDRIESGETDIVLLGATGTGKSATIAWLIEK 60

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           + RP +++A NK LAAQL +EF+ FFP NAVEYFVSYYDYYQPEAYVP+TDT+IEK++S+
Sbjct: 61  LARPTLIIAHNKTLAAQLANEFRKFFPDNAVEYFVSYYDYYQPEAYVPKTDTFIEKDASV 120

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           N +++R+RH AT SLL R D IVV++VSCIYG+G+   Y +   +L++G  + Q+ LL  
Sbjct: 121 NSEVERLRHRATTSLLTRRDVIVVATVSCIYGLGAPSEYLKAGFRLEVGQKISQRVLLER 180

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
             + QY R D+G  RG FRV GD+IEI P + E+   R+ M+G++IE +   +P+TG  +
Sbjct: 181 FTQLQYNRNDVGFERGNFRVRGDTIEIIPVY-EEYTVRIEMWGDEIERVLCLHPVTGNVL 239

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
                + I+  SHYVT    L  A+  I++EL+ RL   ++   LLEAQRLE R  YD+E
Sbjct: 240 SEQRGVLIFPASHYVTSSENLKRAIVDIRKELQQRLRYFKRNNSLLEAQRLETRTEYDIE 299

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           ++E  G C  IENYSR++ GR PGEPP  L +Y  +D L  +DESHVT+PQI  M+ GDF
Sbjct: 300 LMEQLGFCSGIENYSRHIDGRAPGEPPFCLLDYFDDDFLTVIDESHVTVPQIGSMHAGDF 359

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK  L E GFRLPS +DNRPL F+E+       I +SATPG +EL +  G +VEQIIRP
Sbjct: 360 SRKKALVENGFRLPSAIDNRPLCFDEFRQRVGQVIYLSATPGKYELSKSDG-VVEQIIRP 418

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGLVDP + ++  + Q++D+ +EI        R+L+T LTKRMAE+LT++L E  + V Y
Sbjct: 419 TGLVDPKITVKPIKGQIDDLLEEIRKRKLLSERVLVTTLTKRMAEELTDFLSEAGVNVSY 478

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS++ TL R+E++  LR+G+ DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS 
Sbjct: 479 LHSDIDTLHRVELLTSLRMGRIDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSF 538

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAAR+V+ +V +YAD +T+S+Q +IDET RRR  Q ++N+K  + P  +K+ + +
Sbjct: 539 IQTIGRAARHVSGEVHMYADNMTESMQKSIDETNRRRRIQQDYNRKMGVTPVPIKKTVSD 598

Query: 732 V----------IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
           +          ID  +L+  +  +  ID +Q+       K+H+KSL  +M++AA++L FE
Sbjct: 599 ITEVLSRPSRKIDCTILD--SLPDPKIDGKQI-------KSHIKSLEAKMYMAAESLMFE 649

Query: 782 EAARIRDEIKRLK 794
           EAA +RDEI+ LK
Sbjct: 650 EAAELRDEIQSLK 662


>gi|256419588|ref|YP_003120241.1| excinuclease ABC, B subunit [Chitinophaga pinensis DSM 2588]
 gi|256034496|gb|ACU58040.1| excinuclease ABC, B subunit [Chitinophaga pinensis DSM 2588]
          Length = 684

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/672 (51%), Positives = 459/672 (68%), Gaps = 24/672 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q  Y P+GDQP AI QL++GI      Q LLGVTGSGKTFT+A VI+ +QRP +V+ 
Sbjct: 3   FKIQAPYAPAGDQPTAIRQLVEGIQDGAPAQTLLGVTGSGKTFTVANVIQQVQRPTLVLT 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLY EF+ FFP NAVEYFVSYYDYYQPEAY+P +DTYIEK+ SINE++D++R 
Sbjct: 63  HNKTLVAQLYGEFRQFFPDNAVEYFVSYYDYYQPEAYMPVSDTYIEKDLSINEELDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVV+SVSCIYG+G+   Y   I++L  G ++ +  +L  LV   Y R
Sbjct: 123 RATTSLLSGRRDIIVVASVSCIYGMGNPTDYENGIIRLHKGQTIGRNTVLHGLVNSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RG FRV GD+++I   ++ D  +R++ FG++IEEI  F    G++I  +E   I
Sbjct: 183 TTGDFNRGNFRVQGDTVDINLPYV-DFGYRITFFGDEIEEIESFDVQNGKRIGTMENAAI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + Y+ P+  +      I++EL  ++      G+ LEAQRL +R+ YDLEM+   G C
Sbjct: 242 FPANLYMAPKDMMAQITFEIQDELMAQVEYFRSIGKHLEAQRLSERVNYDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L  R PG  P  L +Y P+D LL +DESHVTIPQI GMY GD  RK TL +
Sbjct: 302 SGIENYSRFLDRRAPGTRPFCLLDYFPKDFLLVIDESHVTIPQIGGMYGGDRSRKLTLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS MDNRPL F E+  L    I VSATPG +EL Q +G++VEQ++RPTGL++PP+
Sbjct: 362 FGFRLPSAMDNRPLNFYEFENLVNQAIFVSATPGEYELRQTEGVVVEQVVRPTGLLEPPI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR +  QV+D+ DEI+    +G R+L+T LTKRMAE++ +YL+  N++ RY+HSEV TL
Sbjct: 422 EIRPSVNQVDDLLDEIDKRVLKGGRVLVTTLTKRMAEEMDKYLHRINVKSRYIHSEVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEI+RDLRLG  DVLVG+NLLREGLD+PE  LVAILDADKEGFLR + SL QT GRAA
Sbjct: 482 ERIEILRDLRLGNIDVLVGVNLLREGLDLPEVTLVAILDADKEGFLRDERSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIM---EVI 733
           RN    VI YAD IT S+Q  IDET RRREKQ+ +N  HNI P++V   KE+I+    V+
Sbjct: 542 RNAEGLVIFYADKITDSMQRTIDETDRRREKQVAYNTAHNITPRTVLKSKEQILGQTSVL 601

Query: 734 D--------PILLEDAATTNISID----AQQLSLSKK---KGKAHLKSLRKQMHLAADNL 778
           +        P  + D  +  ++ D    A+Q +++ K   + +  +  ++K M  AA +L
Sbjct: 602 EIKQFDENSPYAVHDEVSL-VAEDAMGYAKQEAVTAKTIPQMEKAISKVKKDMEKAAKDL 660

Query: 779 NFEEAARIRDEI 790
           +F EAAR+RD++
Sbjct: 661 DFMEAARLRDQM 672


>gi|300871666|ref|YP_003786539.1| excinuclease ABC subunit B [Brachyspira pilosicoli 95/1000]
 gi|300689367|gb|ADK32038.1| excinuclease ABC, B subunit [Brachyspira pilosicoli 95/1000]
          Length = 679

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/667 (50%), Positives = 467/667 (70%), Gaps = 24/667 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++++ PSGDQ  AI  L+KG+ ++ K Q LLGVT SGKTFT+A VIE   RP +VM+
Sbjct: 4   FKIESNFKPSGDQITAIDSLVKGLENKNKYQTLLGVTASGKTFTIANVIEKANRPTLVMS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP  D YI+K++S+N++IDR+R 
Sbjct: 64  HNKTLAAQLYRELKDFFPNNAVEYFVSYYDYYQPEAYVPAKDLYIDKDASVNDEIDRLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT SLLER D I+V+SVSCIYG+GS E Y ++ + ++     ++ E++  LV  QY+R 
Sbjct: 124 KATTSLLERRDVIIVASVSCIYGLGSPEDYRKLYIAIEKDGEYDRDEIIEKLVSIQYERV 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
              + R  F+V GD++EI  ++ ++V  RV  FG+ +E I +  P+T QKI   + + IY
Sbjct: 184 KDVLERARFKVMGDTLEIMSAYSDEV-IRVEFFGDTVERIIKINPITRQKIAEQDRVVIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT    L   +K I+EEL+ +  + + EG+L+EA+R+  R  YDLEML   G C 
Sbjct: 243 PAKHFVTGGDKLAAGIKLIEEELEEQYNKFKSEGKLVEAERIYGRTKYDLEMLREVGYCA 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR  G+ P  L +Y P+D L  +DESHV++PQI GM+ GD  RK TL +Y
Sbjct: 303 GIENYSRPLSGRKEGDRPACLIDYFPKDFLTIIDESHVSVPQIRGMFFGDRSRKETLVKY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+  L   TI +SATP  +EL++   + VEQIIRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLFFEEFESLTNDTIYISATPAEYELKKSSQV-VEQIIRPTGLLDPIIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +     Q++ + +EI        RI +T LTK+MAEDLT+YL E  +R RY+HS+++T+E
Sbjct: 422 VYPINGQIDRILEEIKKTVSNNERIFITTLTKKMAEDLTKYLNENGVRTRYLHSDIQTVE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  L+ ILDADK GFLR+ T+LIQTIGRAAR
Sbjct: 482 RVEIIRDLRLGAFDVLVGINLLREGLDVPEVSLILILDADKTGFLRNTTTLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI++ADTI+ ++++AI+ET RRR+ Q+++NK+HNI P+++ +KI ++I+    E+
Sbjct: 542 NANGRVIMFADTISDAMKVAIEETERRRKIQMDYNKEHNITPKTIIKKIQDIIER---EE 598

Query: 741 AATTN-------------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
              T+             + ID +Q      K   ++K L K+M  A+D+L FE+A  IR
Sbjct: 599 KVETSYELHFDFRRFNERVKIDPEQ------KSDDYIKELEKEMKKASDSLEFEKAIEIR 652

Query: 788 DEIKRLK 794
           ++I +LK
Sbjct: 653 EKINQLK 659


>gi|28572626|ref|NP_789406.1| excinuclease ABC subunit B [Tropheryma whipplei TW08/27]
 gi|81839344|sp|Q83NI7|UVRB_TROW8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|28410758|emb|CAD67144.1| excinuclease ABC subunit B [Tropheryma whipplei TW08/27]
          Length = 677

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/673 (49%), Positives = 464/673 (68%), Gaps = 24/673 (3%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
           N H K   +F++  +Y PSGDQP AI +L   I S E   +LLG TG+GK+ T+A +IE 
Sbjct: 4   NLHPK---YFRLAAEYDPSGDQPKAIGELSDRIESGETDIVLLGATGTGKSATIAWLIEK 60

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           + RP +++A NK LAAQL +EF+ FFP NAVEYFVSYYDYYQPEAYVP+TDT+IEK++S+
Sbjct: 61  LARPTLIIAHNKTLAAQLANEFRKFFPDNAVEYFVSYYDYYQPEAYVPKTDTFIEKDASV 120

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           N +++R+RH AT SLL R D IVV++VSCIYG+G+   Y +   +L++G  + Q+ LL  
Sbjct: 121 NSEVERLRHRATTSLLTRRDVIVVATVSCIYGLGAPSEYLKAGFRLEVGQKISQRVLLER 180

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
             + QY R D+G  RG FRV GD+IEI P + E+   R+ M+G++IE +   +P+TG  +
Sbjct: 181 FTQLQYNRNDVGFERGNFRVRGDTIEIIPVY-EEYTVRIEMWGDEIERVLCLHPVTGNLL 239

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
                + I+  SHYVT    L  A+  I++EL+ RL   ++   LLEAQRLE R  YD+E
Sbjct: 240 SEQRGVLIFPASHYVTSSENLKRAIVDIRKELQQRLRYFKRNNSLLEAQRLETRTEYDIE 299

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           ++E  G C  IENYSR++ GR PGEPP  L +Y  +D L  +DESHVT+PQI  M+ GDF
Sbjct: 300 LMEQLGFCSGIENYSRHIDGRAPGEPPFCLLDYFDDDFLTVIDESHVTVPQIGSMHAGDF 359

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK  L E GFRLPS +DNRPL F+E+       I +SATPG +EL +  G +VEQIIRP
Sbjct: 360 SRKKALVENGFRLPSAIDNRPLCFDEFRQRVGQVIYLSATPGKYELSKSDG-VVEQIIRP 418

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGLVDP + ++  + Q++D+ +EI        R+L+T LTKRMAE+LT++L E  + V Y
Sbjct: 419 TGLVDPKITVKPIKGQIDDLLEEIRKRKLLSERVLVTTLTKRMAEELTDFLSEAGVNVSY 478

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS++ TL R+E++  LR+G+ DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS 
Sbjct: 479 LHSDIDTLHRVELLTSLRMGRIDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSF 538

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAAR+V+ +V +YAD +T+S+Q +IDET RRR  Q ++N+K  + P  +K+ + +
Sbjct: 539 IQTIGRAARHVSGEVHMYADNMTESMQKSIDETNRRRRIQQDYNRKMGVTPVPIKKTVSD 598

Query: 732 V----------IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
           +          ID  +L+  +  +  ID +Q+       K+H+KSL  +M++AA++L FE
Sbjct: 599 ITEVLSRPSRKIDCTILD--SLPDPKIDGKQI-------KSHIKSLEAKMYMAAESLMFE 649

Query: 782 EAARIRDEIKRLK 794
           EAA +RDEI+ LK
Sbjct: 650 EAAELRDEIQSLK 662


>gi|325955516|ref|YP_004239176.1| UvrABC system protein B [Weeksella virosa DSM 16922]
 gi|323438134|gb|ADX68598.1| UvrABC system protein B [Weeksella virosa DSM 16922]
          Length = 662

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/667 (50%), Positives = 467/667 (70%), Gaps = 21/667 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ + P+GDQP AI +L +G+   +K Q LLGVTGSGKTFT+A V+  +QRP +V+A
Sbjct: 3   FEIKSTFEPTGDQPQAIKKLAQGVLDGDKYQTLLGVTGSGKTFTIANVVTEIQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NA+EYFVSYYDYYQPEAY+P + TYIEK+ SINE+I+++R 
Sbjct: 63  HNKTLAAQLYMEFKEFFPDNAIEYFVSYYDYYQPEAYLPSSGTYIEKDLSINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D +VV+SVSC+YGIG+   + + ++ ++ G  + +  LL  LV+  Y R
Sbjct: 123 STTSSLLSGRRDILVVASVSCLYGIGNPTEFHKNVISIEQGQIISRTHLLHKLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +   +RG FR+ GD+I+I+P++ +D   R+S FG+++EEIS F   TG+ I  +E I I
Sbjct: 183 TEGAFLRGNFRIKGDTIDIYPAYADD-GIRLSYFGDEVEEISIFDIETGKTITKLEKINI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT + TLN A+  I+ +L  ++    + G+ LEA+RL++R  +DLEM++  G C
Sbjct: 242 YPANLFVTSKETLNDAIHNIQLDLGKQVDYFIEIGKTLEAKRLKERTEFDLEMIKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ +DESHVT+ Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVIDESHVTVSQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +ELE+ +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFESLQNQVIYVSATPAKYELEKSEGVVVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R ++ Q++D+ +EI        R+L+T LTKRMAE+LT++L +  IR  Y+HS++ TL
Sbjct: 422 EVRPSQNQMDDLMEEIQKRVDLDERVLVTTLTKRMAEELTKFLVKYGIRTNYIHSDIDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVKIMADLRAGLFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV------- 732
           RNVN   I+YAD IT S+Q  IDET RRRE Q ++N +H   PQ + +KI+ +       
Sbjct: 542 RNVNGLAIMYADKITDSMQQTIDETNRRREIQHQYNIEHGKTPQPLHKKIISLNKQAESF 601

Query: 733 -IDPI----LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
            ++P     L+ +AA      +  +L  S++K +  ++ L K M  AA NL+F +AA +R
Sbjct: 602 ELNPYEQKHLIAEAA------ENTELYTSEEK-QQQIEKLTKAMEKAAKNLDFIQAASLR 654

Query: 788 DEIKRLK 794
           D+I  LK
Sbjct: 655 DQINALK 661


>gi|289522996|ref|ZP_06439850.1| excinuclease ABC subunit B [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503539|gb|EFD24703.1| excinuclease ABC subunit B [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 674

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/661 (50%), Positives = 449/661 (67%), Gaps = 8/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AI +L  G+    + Q LLGVTGSGKTFT+A VIE +QRP +V+A
Sbjct: 11  FELVAPWKPAGDQPLAIEKLALGLKQGTRYQTLLGVTGSGKTFTIANVIEKIQRPVLVIA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK+FFP+N V YFVSYYDYYQPEAY+P  D YIEK++SINE+I+++R 
Sbjct: 71  HNKTLAAQLYSEFKDFFPNNEVHYFVSYYDYYQPEAYLPSQDIYIEKDASINERIEKLRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T++LLER D IVV+SVSCIYG+G  +SY + I +  +GD++ +K+    L+   Y+R 
Sbjct: 131 ATTKALLERRDVIVVASVSCIYGLGRRKSYEEAIFRFSVGDNINRKDFFKRLLDNYYERN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  +  GTFR  GD +E++P++  D A RV  F ++IE I E  PL G+ I   +   ++
Sbjct: 191 DTTLEPGTFRGRGDVVEVYPAY-SDTALRVFFFDDEIERIEEIDPLWGKTIVEKDCAAVF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HYVT   ++  A+K I+EEL  R+ EL+ EG+LLEAQRL  R  YD++ML   G C 
Sbjct: 250 PAQHYVTTHDSIKKALKAIEEELDFRVAELQSEGKLLEAQRLSTRTRYDMQMLSEVGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GRNPGEPP TL ++ P D ++ +DESH+T+PQI GMY GD  RK TL E+
Sbjct: 310 GIENYSRHLDGRNPGEPPGTLLDFFPGDFVMVIDESHITVPQIRGMYNGDVSRKKTLVEH 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPLR+EE+       I VSATPG +EL   +  +VE ++RPTG++DP VE
Sbjct: 370 GFRLPSCLDNRPLRWEEFEEYMKQVIFVSATPGDYELSTSEQ-VVELLVRPTGILDPKVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +  A+ Q++D+   +    ++  R+L+  LTKR AEDL EYL     +V+Y+HSE  T E
Sbjct: 429 VVPAKHQLDDLLYRLKGCLKENKRVLVNTLTKRSAEDLAEYLAGLGYKVKYIHSEFDTFE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E++RDLR+G  D+LVG+NLLREGLD+PE  LVAILDAD+EGFLRS  S+IQ IGRAAR
Sbjct: 489 RAELLRDLRIGTIDILVGVNLLREGLDLPEVSLVAILDADREGFLRSSRSIIQMIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +    V+LYAD +T+SI++A+ ET RRR+ Q   N +H I P+S+ + I+ ++   LLE 
Sbjct: 549 HAAGMVVLYADEMTESIKVAVSETERRRKIQEAFNIEHGIEPKSIVKPIVHLLPEELLEK 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
                            +  +  L+ L + M  A   LNFEEAAR+RD I  +K     +
Sbjct: 609 REGEG------DHGAVPRPSEVSLEELERMMWDAVAKLNFEEAARLRDLISDIKGGRITR 662

Query: 801 G 801
           G
Sbjct: 663 G 663


>gi|319935310|ref|ZP_08009748.1| UvrABC system protein B [Coprobacillus sp. 29_1]
 gi|319809718|gb|EFW06119.1| UvrABC system protein B [Coprobacillus sp. 29_1]
          Length = 657

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/655 (52%), Positives = 463/655 (70%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI QL++GI + +K Q+LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 4   FKLVSEYSPMGDQPTAIKQLVEGIRAGQKEQVLLGGTGTGKTFTVSNVIAEVNKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFP N VEYFVS +D+YQPEAY+P++D YI+K +  N +I+ +R 
Sbjct: 64  HNKTLAGQLYSELKEFFPENRVEYFVSNFDFYQPEAYIPKSDVYIDKTAQTNYEIEMLRS 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +A  SLLER D IVV+SV+ IYG+G+ E Y +MI  L++G  +++KELL+ LV +QY+R 
Sbjct: 124 AAMNSLLERRDTIVVASVASIYGLGNPEQYREMIFSLRVGQEIDRKELLTYLVDRQYQRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   +GTFRV GD IEI P H E    R+ +FG+++E ISE  PLTG+ + + +T  IY
Sbjct: 184 DIEQSKGTFRVRGDVIEIVPGHTESWLIRIELFGDEVERISEADPLTGKTLGSYKTYTIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               YVT +  +  A   I EELK RL   E+  + LE +RL+QR  +D+EML   G C 
Sbjct: 244 PAYGYVTRKDQMLKACDTIAEELKERLKYFEEGMKPLEYERLDQRTRHDIEMLREVGMCP 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G+ P TL +Y P+D L+ VDESHV +PQ+ GM+ GD  RK TL EY
Sbjct: 304 GIENYSRHIDGRQAGQRPYTLIDYFPDDFLMIVDESHVMLPQVRGMFNGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  +    I VSATPG +ELE+  G   EQIIRPTGL+DP +E
Sbjct: 364 GFRLPSALDNRPLRFEEFEKIINQVIYVSATPGDYELERTNGTFAEQIIRPTGLLDPIIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R ++ Q++D+  EIN   ++  R+L+T LTKRMAEDL+ YL E  ++V Y+HS+ KTLE
Sbjct: 424 VRPSKNQIDDIISEINDRIEKNERVLITTLTKRMAEDLSAYLKEMGMKVAYLHSDTKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RDLRLGK+DVL+GINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RTEILRDLRLGKYDVLIGINLLREGLDLPEVSLVCILDADKEGFLRSQRSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + KVI+Y D +T S++ AIDET+RRRE Q E+N++H+I PQ++ ++I ++I      D
Sbjct: 544 NAHGKVIMYGDNMTDSMKKAIDETSRRREIQEEYNREHHITPQTIHKEIRDLIQGKETID 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            AT   S+  +     KK  K  +  L K+M  AA  L+FE A  +RD I  LK 
Sbjct: 604 EAT---SLLKKGKKADKKAKKKLIDDLEKEMKQAAKVLDFERAMELRDMIMELKG 655


>gi|254457128|ref|ZP_05070556.1| excinuclease ABC, B subunit [Campylobacterales bacterium GD 1]
 gi|207085920|gb|EDZ63204.1| excinuclease ABC, B subunit [Campylobacterales bacterium GD 1]
          Length = 660

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/657 (52%), Positives = 456/657 (69%), Gaps = 8/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  L + I    + Q L GVTGSGKT+TMAKVIE ++ P I+M 
Sbjct: 7   FKVNSPYQPAGDQPTAIKVLSESILKGNRYQALEGVTGSGKTYTMAKVIENVKMPTIIMT 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEF+ FFP+N +EYFVSYYDYYQPEAY+PR D +IEK+S+IN++++RMR 
Sbjct: 67  HNKTLAAQLYSEFREFFPNNHIEYFVSYYDYYQPEAYIPRQDLFIEKDSAINDELERMRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S+T +LL  +D IV++SVS  YG+G  E Y  M+  L++GD + QK+LL  LV+  Y R 
Sbjct: 127 SSTANLLSYDDVIVIASVSANYGLGDPEEYLNMVQALEVGDEIPQKKLLLRLVEMGYSRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D     G  RV G+S++I+P + E  A R+  FG++IE I  F  +  +K+   +   IY
Sbjct: 187 DTYFDSGHIRVNGESLDIYPPYFEQEAIRIEFFGDEIEAIYTFDIIDNKKLEEHKKFTIY 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A S +   +  +  A+K I+EEL  RL   +  G+LLE QRL+QR+ +DLEML+TTG C+
Sbjct: 247 ATSQFSVSQEKMAVAIKRIEEELDERLAYFQSAGKLLEHQRLKQRVEFDLEMLQTTGMCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENYSR LT + PGE P TL +Y     +D L+ VDESHV++PQ  GMY GD  RK  L
Sbjct: 307 GVENYSRLLTNKKPGEAPFTLLDYFALNHKDYLVIVDESHVSLPQYRGMYAGDRARKEVL 366

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL+ +E+    P  + VSATP  +ELE    +   QIIRPTGL+DP
Sbjct: 367 VDYGFRLPSALDNRPLKADEYINKAPHYLFVSATPAEYELEMS-SVTAHQIIRPTGLLDP 425

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EI+ +  QVED++DEI + A +  RIL+TVLTK+MAE LT+YL +  I+V+YMHS++ 
Sbjct: 426 ILEIKPSDNQVEDIHDEIKIIAAKNERILITVLTKKMAEALTKYLADLGIKVQYMHSDID 485

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER +IIR LRLG+FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+T+LIQTIGR
Sbjct: 486 TIERNQIIRALRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSETALIQTIGR 545

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
            ARN N +VILYA+ ITKS+Q AID TT RRE Q  +NK++ I P +   K+   +    
Sbjct: 546 GARNSNGRVILYANKITKSMQKAIDTTTSRREIQEAYNKENGITPTTTIRKLDANLKVED 605

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             D    +  +D  ++  S+K  K   K L  +M  AA  LNFEEAAR+RDEI ++K
Sbjct: 606 HGDIYQKHKKMD--KMPASEK--KVITKELMLKMKQAAKELNFEEAARLRDEIMKIK 658


>gi|302325697|gb|ADL24898.1| UvrABC system protein B [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 706

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/692 (49%), Positives = 466/692 (67%), Gaps = 38/692 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y  +GDQP AI +L +G  + E+ Q LLGVTGSGKTFTMA VI+ + +P +++ 
Sbjct: 16  FDLVSPYGAAGDQPKAIEELTEGFKNGEQFQTLLGVTGSGKTFTMANVIKNVGKPTLILT 75

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEYFVSYYDY+QPEAY+P TDT+IEK++SIN++ID++R 
Sbjct: 76  HNKTLAAQLYQEFKSFFPNNAVEYFVSYYDYFQPEAYIPHTDTFIEKDASINDEIDKLRL 135

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT +LL R D I+V+SVSCIYG+GS   Y  ++V++K GD  ++ ++L  LV  QY R 
Sbjct: 136 RATANLLTRRDVIIVASVSCIYGLGSPSEYFDLMVRIKKGDIYDRDKILRDLVHIQYSRN 195

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RG+FRV GD IE+ PS+ ED   R+ +FG++++ +  F  +TG+ I+ VE + I 
Sbjct: 196 DFSLDRGSFRVRGDVIEVHPSYDED-GLRIELFGDEVDRLYRFNIVTGEVIKEVEELTIA 254

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT        ++ I++EL  RL EL+KEG++LE+ RL  R  YD+EML  TG C 
Sbjct: 255 PAKHFVTKEENRAGMLQRIQKELTDRLAELDKEGKVLESARLSSRTRYDMEMLRETGMCN 314

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR +  R PG  P TL +Y  +D LL +DESHV+IPQ+ GM  GD  RK TL +Y
Sbjct: 315 GIENYSRIIEDRAPGTRPFTLIDYFGDDWLLMIDESHVSIPQVGGMAEGDKSRKTTLVQY 374

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           GFRLP  +DNRP+ F E+  + P  ++ VSATPG +EL++  G++ EQI RPTGL+DP +
Sbjct: 375 GFRLPCALDNRPMNFAEFEYMYPKQVLFVSATPGDYELKKTNGVVTEQINRPTGLLDPKI 434

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+   + Q++ +   I    + G R+L+T LTK+MA+DLTE+  E  +R +Y+HS++KTL
Sbjct: 435 ELFPIQGQMDVLLYRIEEVVKNGDRVLVTTLTKKMAQDLTEFFIEAGVRAKYLHSDIKTL 494

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER E+IR LR G++DVLVGINLLREGLD+PE  +VAILDADKEGFLR+  SLIQT+GRA+
Sbjct: 495 ERHELIRGLRSGEYDVLVGINLLREGLDLPEVSMVAILDADKEGFLRNYRSLIQTMGRAS 554

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME---VIDPI 736
           RNVN  V+L+AD +T+S+Q AIDET RRR  Q E NK+H I P+SV  KI E   +IDP+
Sbjct: 555 RNVNGTVLLFADNMTESLQKAIDETNRRRGLQEEFNKEHGITPKSVTRKIEEDLRIIDPL 614

Query: 737 LLEDAATTNISIDAQ-----------QLSLSKKKGK----------------------AH 763
                 TT+   D +           Q S  ++K K                      + 
Sbjct: 615 GDIGDDTTDSEDDWKDKPGIRPMEPLQPSNYRRKTKDERRKKAAAPGAPPDKPSKASESK 674

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           L  L +QM  AA  L+FEEAARIRD I+ L +
Sbjct: 675 LADLERQMKEAAARLDFEEAARIRDIIRSLDA 706


>gi|313683342|ref|YP_004061080.1| excinuclease ABC subunit b [Sulfuricurvum kujiense DSM 16994]
 gi|313156202|gb|ADR34880.1| Excinuclease ABC subunit B [Sulfuricurvum kujiense DSM 16994]
          Length = 657

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/658 (52%), Positives = 458/658 (69%), Gaps = 10/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  L  GI   E+   L GVTGSGKT TMA+VIE +Q P I+M 
Sbjct: 4   FKVHSPYQPAGDQPVAIEALSSGIKRGERYVALEGVTGSGKTMTMARVIEQVQLPTIIMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEF++FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SSIN++++R+R 
Sbjct: 64  HNKTLAAQLYSEFRSFFPENHVEYFISYYDYYQPEAYIPRQDLFIEKDSSINDELERLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL  +D IVV+SVS  YG+G  E Y +M+  + IGD + QK+LL  LV+  Y R 
Sbjct: 124 SATANLLSYDDVIVVASVSANYGLGDPEEYEKMVQVVTIGDEISQKKLLLRLVEMGYARN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D     G FRV G+ ++I+P + +D A R+  FG+++E ++ F PL    +  +ETI IY
Sbjct: 184 DSYFDGGHFRVNGEVVDIYPPYWQDQALRIEFFGDEVERLALFEPLNNSVVETIETITIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A S +   +  L+ A+K I++EL  RL +L+KEG+++EAQRL+QR  +DLEML+ TG C+
Sbjct: 244 ATSQFAVGQEKLSRAIKRIEDELGERLAQLDKEGKIVEAQRLKQRCEFDLEMLQATGMCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENYSR+LT + PGE P TL +Y     +  L+ VDESHV++PQ  GM+ GD  RK  L
Sbjct: 304 GIENYSRHLTDKKPGEAPYTLLDYFALHHDKYLIIVDESHVSLPQFRGMFAGDRSRKEVL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL  +E+    P  + VSATP + E++     I  QIIRPTGL+DP
Sbjct: 364 VDYGFRLPSALDNRPLMIDEFMNKAPHYMFVSATPAAQEID-ISTTIAHQIIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + I+ +  QVED++DEI      G R+L+TVLTK+MAE LT+YL +  I+V+YMHSE+ 
Sbjct: 423 IITIKPSENQVEDLHDEIKKTVALGDRVLVTVLTKKMAEALTKYLADLGIKVQYMHSEID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER +IIR LR+G FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 483 AIERNQIIRGLRVGDFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN + +VILYA  IT S++ AI  TT RR  Q  +N+KH I P + K  + E +    
Sbjct: 543 AARNEHGRVILYAQKITGSMERAIKTTTDRRAVQEAYNQKHGITPITTKRSLDENLK--- 599

Query: 738 LEDAATT-NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           LED +   N S  A+ L  +++  K  ++ L  +M  AA  L FEEAAR+RDEI +++
Sbjct: 600 LEDPSELYNRSKKAKTLPAAER--KKLIEELNIKMREAAKKLEFEEAARLRDEIAKIR 655


>gi|223041263|ref|ZP_03611510.1| excinuclease ABC, B subunit [Campylobacter rectus RM3267]
 gi|222877471|gb|EEF12605.1| excinuclease ABC, B subunit [Campylobacter rectus RM3267]
          Length = 658

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/657 (49%), Positives = 453/657 (68%), Gaps = 7/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PS DQ  A+A ++  + S  K Q LLGVTGSGKTFTMA VI  +  P ++M 
Sbjct: 4   FEISSKFSPSEDQARAVANIVASVRSGNKYQTLLGVTGSGKTFTMANVIRELNMPTLIMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SS+NE+++R+R 
Sbjct: 64  HNKSLAAQLYSEFKGFFPKNHVEYFISYYDYYQPEAYIPRQDLFIEKDSSVNEELERLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL  +D + V+SVS  YG+G+   Y  M+  L +GD + Q+ LL  LV   YKR 
Sbjct: 124 SATASLLSFDDVVCVASVSANYGLGNPSEYQGMVAYLNVGDKINQRALLQKLVDMGYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD ++++P++  D A+R+  FG++IE +     L  +K  +++   +Y
Sbjct: 184 DVYFDRGDFRVNGDVVDVYPAYFNDEAFRIEFFGDEIETMYSLDVLENKKRHDLKKFILY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S ++     L  A+K I+EEL  RL E  ++ +L+EAQRL+QR+ +DLEM+ +TG C+
Sbjct: 244 PTSQFIVGENRLKIAIKQIEEELAERLKEFNEQSKLVEAQRLKQRVEFDLEMMSSTGMCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENY+R+LTG+ PGE P ++F+Y     +D L+ VDESHV++PQ  GMY GD  RK  L
Sbjct: 304 GIENYARHLTGQKPGETPYSMFDYFELGGKDYLVIVDESHVSLPQFRGMYAGDRSRKEVL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL+F+E+   R   + VSATP  +E+    G + EQI+RPTGL+DP
Sbjct: 364 VEYGFRLPSALDNRPLKFDEFINKRAKFLFVSATPNEYEINLSCGHVYEQILRPTGLLDP 423

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EI+ +  QVE ++DE     ++  R+L+TVLTK+MAE+L+ Y  E  I+V+YMHS++ 
Sbjct: 424 LIEIKDSENQVEILFDEAKKTIERNERVLVTVLTKKMAEELSRYYTELGIKVKYMHSDID 483

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER EIIR LR G+FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GR
Sbjct: 484 AVERNEIIRGLRGGEFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGR 543

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN +V+++A  ITKS+Q A+D T  RR+ Q E+N+ H I P+S    I E +    
Sbjct: 544 AARNVNGRVLMFAKKITKSMQEAMDTTLARRKMQEEYNRAHGITPRSASRNIEESLH--- 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +ED  T  +   A    +   +  + +K LRKQM  AA  L FE+AA +RDEI +++
Sbjct: 601 VED-GTEILRKGANLEKMPAAERASIIKELRKQMLEAAAQLEFEKAAALRDEIAKIR 656


>gi|326335519|ref|ZP_08201706.1| excision endonuclease subunit UvrB [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692285|gb|EGD34237.1| excision endonuclease subunit UvrB [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 667

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/658 (50%), Positives = 452/658 (68%), Gaps = 5/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +D+ P GDQP AIA L+ GI+ +EK Q LLGVTGSGKTFT+A V+E +Q P +V+A
Sbjct: 3   FQLISDFKPMGDQPGAIASLVSGINDQEKYQTLLGVTGSGKTFTIANVVEQVQVPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK FFP+NAVEYFVSYYDYYQPEAY+P T  YIEK+ SINE I+RMR 
Sbjct: 63  HNKTLAAQLYNEFKAFFPNNAVEYFVSYYDYYQPEAYIPVTGVYIEKDLSINEDIERMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T +LL  R D +VV+SVSC+YGIG+   + + ++ +  G ++ + + +  LV+  Y R
Sbjct: 123 STTSALLSGRRDVLVVASVSCLYGIGNPLEFQKNVISIGEGQTLTRTKFMHQLVQSLYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                + G FRV GD I++FP + E    RV  FGN+IE I  F   T + I  +E I I
Sbjct: 183 TTADFLHGNFRVKGDVIDVFPGYSE-TPLRVHFFGNEIELIETFDRETNKTIERLEKINI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+K I+++L  ++   +  G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLQAAIKDIQDDLVKQIEFFQSAGKTLEAKRLEERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL  R PG  P  L +Y P+D L+ +DESH TIPQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDRRPPGSRPFCLIDYFPKDFLMVIDESHATIPQVRAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL++  GI VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPTDYELQKSGGIYVEQVIRPTGLLDPKI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R ++ Q++D+ +EI    ++  R+L+T LTKRMAE+LT+YL +  +R RY+HS+V TL
Sbjct: 422 EVRPSKNQIDDLLEEIQKCVEEDQRVLVTTLTKRMAEELTKYLTKMEVRCRYVHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  S+ QT+GRAA
Sbjct: 482 ERIEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSARSMTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N + I+YAD IT S+++ I+ET  RREKQ+ +N  H I PQ + ++I   +    + 
Sbjct: 542 RNINGRAIMYADKITDSMRVTIEETAYRREKQMNYNLTHGITPQPLHKRIENALSKSPIT 601

Query: 740 DAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +    N     +  S   +S+++ +  ++  RK M  A+  L+F +AA  RD +K L+
Sbjct: 602 EFHYENTPKKKETTSTKPMSREELEKEIQQTRKLMEAASKELDFIQAAHYRDLLKELQ 659


>gi|289549151|ref|YP_003474139.1| excinuclease ABC subunit B [Thermocrinis albus DSM 14484]
 gi|289182768|gb|ADC90012.1| excinuclease ABC, B subunit [Thermocrinis albus DSM 14484]
          Length = 663

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/654 (50%), Positives = 449/654 (68%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++TD  P+GDQP AI QLL+ +    K Q+LLG TG+GKTFT+A VI    +P +++ 
Sbjct: 7   FLLKTDLKPAGDQPKAIKQLLENLEKGVKEQVLLGATGTGKTFTIANVIAQYNKPTLIVV 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NKILAAQLY E K  FP NAVEYF+SYYDYYQPEAY+P  D YIEK++SINE ++R RH
Sbjct: 67  HNKILAAQLYRELKELFPDNAVEYFISYYDYYQPEAYIPEKDLYIEKDASINEILERYRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT S+LER D IVV+SVSCIYG+GS +SY  M + +++GD +   +L   LV+  Y+R 
Sbjct: 127 SATVSVLERRDVIVVASVSCIYGLGSPDSYYSMRIPIEVGDRISITKLTRKLVEIGYQRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I R  F V G+++EI PS  ED   R+  + +++E I     +    I +V  + ++
Sbjct: 187 DYSIKRAVFSVKGNALEIIPSDAEDRLVRIEFWDDEVESIKILDAINRHVIDSVNRVVLF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV PR  +  A+K I+++L  R+    K GR +EAQRL QR  +D+EM+   G C+
Sbjct: 247 PASHYVAPRDRIEEALKEIEKDLHERVEWFRKRGRHVEAQRLYQRTMHDIEMIRELGHCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY  GR PGEPP TL +Y P+D LL +DESHVT+PQI  MY GD  RK  L EY
Sbjct: 307 GIENYSRYFDGRKPGEPPFTLLDYFPKDFLLIIDESHVTLPQIRAMYNGDRSRKEKLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           G+RLPS +DNRPL F+E+       I VSATPG WELE+ +G +VEQI+RPTGL+DP VE
Sbjct: 367 GWRLPSALDNRPLTFQEFLERINQVIYVSATPGEWELERSKGAVVEQIVRPTGLLDPEVE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +RS + Q+ED+  EI +  ++G R L+   TKR+AE++ EYL +R I+ +YMHS+   +E
Sbjct: 427 VRSTQGQLEDLVKEIQIRKKRGERALVLTTTKRLAEEVAEYLNDRKIKAKYMHSDQDAIE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +II++LR G  D +VG+NLLREGLD+PE  LVAIL+ADKEGFLRS TSLIQTIGRAAR
Sbjct: 487 RAKIIKELREGSIDAIVGVNLLREGLDLPEVSLVAILEADKEGFLRSYTSLIQTIGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD IT S+Q AI+ET RRR  Q ++N++H I P+S+ + + E+   + +E+
Sbjct: 547 NINGKAILYADRITPSMQRAIEETNRRRRIQQQYNQEHGITPKSITKPVKEL---LAIEE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                +     +   +++     +  L K+M   A    FE+AA++RDEIK+L+
Sbjct: 604 LDYVKLPTHLPKGIKTEEDILEKIAKLEKEMWECAKRWEFEKAAQLRDEIKKLR 657


>gi|269123687|ref|YP_003306264.1| excinuclease ABC, B subunit [Streptobacillus moniliformis DSM
           12112]
 gi|268315013|gb|ACZ01387.1| excinuclease ABC, B subunit [Streptobacillus moniliformis DSM
           12112]
          Length = 658

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/659 (50%), Positives = 466/659 (70%), Gaps = 15/659 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI ++++ I +    Q+LLGVTGSGKTFT+A +I+ + RPA++MA
Sbjct: 3   FKLHSDYKPTGDQPEAIKKVVENIKNGISDQILLGVTGSGKTFTIANIIKELNRPALIMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNKILAAQLY+E+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+S+INE+ID++ H
Sbjct: 63  PNKILAAQLYNEYKQFFPENAVEYFVSYYDYYQPEAYIQSTDTYIEKDSAINEEIDKLTH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS-VEQKELLSSLVKQQYKR 319
           +AT +LL R D IV++SVS IYG+GS  SY+   + + I  S + +KEL+ SL+  +Y+R
Sbjct: 123 AATAALLNRKDVIVIASVSAIYGLGSPNSYADRSLYVDIALSGIGRKELIKSLLSLRYER 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D  + R  FRV GD I+++P + +D+ +R   F  ++E ISE + LT +KIR+++ + +
Sbjct: 183 NDAILERAKFRVKGDVIDVYPIY-QDIVYRFEFFDEELESISELHTLTYKKIRDIKRLNL 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
              +HY++   T N  +  I+EE+  R+   E   +L+EAQR++QR  YD+EM+   G C
Sbjct: 242 MPATHYLSEVDT-NVLVDNIREEMNERIKYFEDRLQLVEAQRIKQRTEYDIEMIREIGYC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           + +ENYSRYLTG+  GE P TL +Y PE  ++F+DESH+ +PQI GM  GD  RK  L  
Sbjct: 301 KGMENYSRYLTGKKSGEAPYTLLDYFPESPIVFLDESHIMVPQIGGMSNGDRSRKEMLVN 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLR EE+       + VSATP  +E+ +  G IVE ++RPTG+V+P +
Sbjct: 361 HGFRLPSALDNRPLRHEEFFNKVEQVVYVSATPSDYEINESNGEIVELLVRPTGIVEPSI 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR  + QV+++ D+I     +G RIL+T LTK+MAE+LTEY  +  I+V+YMHSE+ T+
Sbjct: 421 EIRPTKNQVDNLMDDIKERVSRGERILVTTLTKKMAEELTEYYLDYGIKVKYMHSEISTI 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EI++ LR G+FDVLVGINLLREGLD+PE  LVAIL+ADKEGFLRS+ SLIQT+GRAA
Sbjct: 481 DRVEIVKGLRNGEFDVLVGINLLREGLDLPEVSLVAILEADKEGFLRSRRSLIQTMGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK----EKIMEVIDP 735
           RNVN  VILYAD ITKS++ AIDE  RRR+ Q  +N ++NI PQ+VK    E ++E  D 
Sbjct: 541 RNVNGHVILYADKITKSMKEAIDEVERRRDVQERYNMENNIVPQNVKAHLTESLLEYTDE 600

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +  ED     ++        S K+ +  +K +  +M   A+N  +EEA   R+++  LK
Sbjct: 601 V--EDKKENKVTFK------SIKELEKEIKKVEAEMKKFAENYQYEEAIDRRNKLNELK 651


>gi|255536616|ref|YP_003096987.1| excinuclease ABC subunit B [Flavobacteriaceae bacterium 3519-10]
 gi|255342812|gb|ACU08925.1| Excinuclease ABC subunit B [Flavobacteriaceae bacterium 3519-10]
          Length = 663

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/665 (50%), Positives = 461/665 (69%), Gaps = 13/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+Q++Y P+GDQP AI +L KG+   EK Q LLGVTGSGKTFT+A V+  +Q+P +V+A
Sbjct: 3   FQLQSEYKPTGDQPVAIDKLTKGLEIGEKYQTLLGVTGSGKTFTVANVVNNVQKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEA++  T+TYIEK+ SINE+++++R 
Sbjct: 63  HNKTLAAQLFMEFKEFFPDNAVEYFVSYYDYYQPEAFIASTNTYIEKDLSINEEVEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA+ SLL  R D ++V+SVSCIYGIG+   +++ +++LK    + + + L  LV   Y R
Sbjct: 123 SASASLLSGRRDVLIVASVSCIYGIGNPSEFNKSLIELKKSSKITRTDFLHKLVNALYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD I+++P++  D A RV  FG++IE+I  F PLTG  + + + + I
Sbjct: 183 TLNEFTRGTFRVKGDVIDVYPAY-ADNAVRVQFFGDEIEKIYSFNPLTGNIMSDFDEMNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT + T   A++ I++++  ++       +  EA+RL++R   DLEM++  G C
Sbjct: 242 YPANLFVTSKETQVGAIREIQDDMVKQVDFFNSIEKPFEAKRLQERTELDLEMMKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY   R PG  P  L +Y P+D L+ +DESHVT+PQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDRRLPGTRPFCLLDYFPKDFLMVIDESHVTVPQVHAMYGGDRSRKEVLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLP+ MDNRPL+FEE+  ++   I VSATP  +ELE+  G  VEQIIRPTGL+DP +
Sbjct: 362 HGFRLPAAMDNRPLKFEEFEAMQNQVIYVSATPADYELEKSGGEYVEQIIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           +IR +  Q++D+ +EI    +   R+L+T LTK+MAE+LT+Y     IR RY+HS+V+TL
Sbjct: 422 DIRPSINQIDDLIEEIRKRTEVDERVLVTTLTKKMAEELTKYFTRFGIRTRYIHSDVETL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERI+I++DLR+G FDVLVG+NLLREGLD+PE  LVAILDADKEG LRS+ SL+QTIGRAA
Sbjct: 482 ERIQIMQDLRVGLFDVLVGVNLLREGLDLPEVSLVAILDADKEGMLRSRRSLVQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RNVN + ILYAD IT S+Q AIDET  RR+KQ+E+N+KH + P S+ +KI E++      
Sbjct: 542 RNVNGRAILYADKITVSMQRAIDETNYRRQKQMEYNEKHGLVPTSLNKKISEILVGRSKD 601

Query: 734 --DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
             DP   +      ++ D        K  +  +   +K M  AA NL+F +AA++RDEI 
Sbjct: 602 FPDPKYTQKEILKQVAEDKANYG---KDAQVLIAEKQKAMEAAARNLDFIKAAKLRDEIA 658

Query: 792 RLKSS 796
            LK++
Sbjct: 659 ALKAT 663


>gi|42526877|ref|NP_971975.1| excinuclease ABC subunit B [Treponema denticola ATCC 35405]
 gi|81831412|sp|Q73MY7|UVRB_TREDE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|41817192|gb|AAS11886.1| excinuclease ABC, B subunit [Treponema denticola ATCC 35405]
          Length = 662

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/657 (51%), Positives = 459/657 (69%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY PSGDQ  AI  L  GI + +K Q L GVTGSGKTFTMA +I+A+Q+P ++++
Sbjct: 4   FKLISDYKPSGDQGEAIKALSDGIIAGDKFQTLKGVTGSGKTFTMANIIQAVQKPTLIIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP  D YIEK++SIN++IDR+R 
Sbjct: 64  HNKTLAAQLYREFKTFFPENAVEYFVSYYDYYQPEAYVPARDLYIEKDASINDEIDRLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ER D IVVS+VSCIYG+G  ES+  + + ++ G+++E ++L   L+  QY+R 
Sbjct: 124 SATFSLMERRDVIVVSTVSCIYGLGLPESWRDLRITIEKGENIEIEKLKKQLISLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RG FRV GD +EIFP+++ED A+R+     +I  I +F P++G+ I+  E + IY
Sbjct: 184 DAVLERGRFRVKGDVMEIFPAYMED-AYRLEFDWEEIVRIRKFNPISGEVIQEYEELSIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V P   +  A++ IK+EL+ RL  L KEG+LLEA+RL+ R  YD+EML   G C 
Sbjct: 243 PAKHFVMPEDAIPNALERIKKELEERLNVLNKEGKLLEAERLKTRTEYDIEMLSEMGYCP 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  +  R PGEPP TLF Y P+D LLF+DESHVT PQ+  MY GD  RK  L ++
Sbjct: 303 GIENYSAPIANRKPGEPPATLFHYFPDDFLLFMDESHVTFPQVGAMYEGDRSRKQNLVDF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP  +DNRPL+ +E+  +    + VSATPG  E++     IVEQ+IRPTGL+DP +E
Sbjct: 363 GFRLPCALDNRPLKIDEFEKMLNQAVFVSATPGPKEIKYSTR-IVEQVIRPTGLLDPIIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I  +  Q+E +Y E+        R L+  LTK+MAEDLT+YL    ++V+Y+HSEV+T+E
Sbjct: 422 IHKSEGQMEHIYGEVKKRIALNERSLILTLTKKMAEDLTDYLTGLGLKVKYIHSEVETIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI++ LR G+FDVL+GINLLREG+D+PE   + ILDADK GFLRS TSLIQ +GRAAR
Sbjct: 482 RVEILKGLRAGEFDVLIGINLLREGIDLPEVSFIGILDADKIGFLRSTTSLIQIVGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--DPILL 738
           N N KV++YAD I+ +++  I+ET RRR  Q  +NK+H I P+++K+ I +++  +  + 
Sbjct: 542 NENGKVVMYADRISDAMKETIEETNRRRAIQEAYNKEHGITPKTIKKAIEDILTRENEIK 601

Query: 739 EDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           ++AA          L+ L+    K  +K L  QM   AD L FEEAA IRD+I+ +K
Sbjct: 602 KEAALAEAGPLINSLNILNPADRKKLIKKLEAQMAEYADMLMFEEAAVIRDKIEEVK 658


>gi|296125069|ref|YP_003632321.1| excinuclease ABC, B subunit [Brachyspira murdochii DSM 12563]
 gi|296016885|gb|ADG70122.1| excinuclease ABC, B subunit [Brachyspira murdochii DSM 12563]
          Length = 685

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/661 (50%), Positives = 469/661 (70%), Gaps = 12/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++++ PSGDQ  AI  L+KG+ ++ K Q LLGVT SGKTFT+A VIE   RP +VM+
Sbjct: 6   FKLESNFKPSGDQVTAIESLVKGLENKNKYQTLLGVTASGKTFTIANVIEKANRPTLVMS 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP  D YI+K++S+N++IDR+R 
Sbjct: 66  HNKTLAAQLYRELKDFFPNNAVEYFVSYYDYYQPEAYVPAKDLYIDKDASVNDEIDRLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT SLLER D I+V+SVSCIYG+GS E Y ++ + ++     ++ E++  LV  QY+R 
Sbjct: 126 KATTSLLERRDVIIVASVSCIYGLGSPEDYRKLYISIEKDGEYDRDEIIEKLVSIQYERV 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
              + R  FRV GD++EI  ++ ++V  R+  FG+ +E I +  P+T +K+   + + IY
Sbjct: 186 KDVLERARFRVIGDTLEIMSAYSDEV-IRIEFFGDTVERIIKINPVTRKKLSEQDRVVIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT    L   +K I+EEL+ +  + + EG+L+EA+R+  R  YDLEML   G C 
Sbjct: 245 PAKHFVTGGDKLAAGIKLIEEELEEQYNKFKSEGKLVEAERIYGRTKYDLEMLREVGYCA 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR  G+ P  L +Y P+D L  +DESHV++PQI GM+ GD  RK TL +Y
Sbjct: 305 GIENYSRPLSGRKEGDRPACLIDYFPKDFLTIIDESHVSVPQIRGMFFGDRSRKETLVKY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+  L   TI +SATP  +EL++   + VEQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLFFEEFEKLTNDTIYISATPAEYELKKSSKV-VEQIIRPTGLLDPIIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +     Q++ + +EI        RI +T LTK+MAEDLT+YL E  +R RY+HS+++T+E
Sbjct: 424 VYPIDGQIDRILEEIKKTISNNERIFITTLTKKMAEDLTKYLNENGVRTRYLHSDIQTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  L+ ILDADK GFLR+ T+LIQTIGRAAR
Sbjct: 484 RVEIIRDLRLGAFDVLVGINLLREGLDVPEVSLILILDADKTGFLRNTTTLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI++AD+I+ ++++AIDET RRR+ Q+E+NK+HNI P+++ +KI ++I+    E+
Sbjct: 544 NANGRVIMFADSISDAMKVAIDETERRRKIQMEYNKEHNITPKTIIKKIQDIIER---EE 600

Query: 741 AATTN--ISIDAQQLSL-----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              T+  +  D ++ +       K++   ++K L K+M  A+D+L FE+A  IR++I +L
Sbjct: 601 KVETSYELHFDFRRFNERVKIDPKQQSDEYIKELEKEMKRASDSLEFEKAIEIREKINQL 660

Query: 794 K 794
           K
Sbjct: 661 K 661


>gi|261415175|ref|YP_003248858.1| excinuclease ABC, B subunit [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371631|gb|ACX74376.1| excinuclease ABC, B subunit [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 732

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/692 (49%), Positives = 466/692 (67%), Gaps = 38/692 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y  +GDQP AI +L +G  + E+ Q LLGVTGSGKTFTMA VI+ + +P +++ 
Sbjct: 42  FDLVSPYGAAGDQPKAIEELTEGFKNGEQFQTLLGVTGSGKTFTMANVIKNVGKPTLILT 101

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEYFVSYYDY+QPEAY+P TDT+IEK++SIN++ID++R 
Sbjct: 102 HNKTLAAQLYQEFKSFFPNNAVEYFVSYYDYFQPEAYIPHTDTFIEKDASINDEIDKLRL 161

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT +LL R D I+V+SVSCIYG+GS   Y  ++V++K GD  ++ ++L  LV  QY R 
Sbjct: 162 RATANLLTRRDVIIVASVSCIYGLGSPSEYFDLMVRIKKGDIYDRDKILRDLVHIQYSRN 221

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RG+FRV GD IE+ PS+ ED   R+ +FG++++ +  F  +TG+ I+ VE + I 
Sbjct: 222 DFSLDRGSFRVRGDVIEVHPSYDED-GLRIELFGDEVDRLYRFNIVTGEVIKEVEELTIA 280

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT        ++ I++EL  RL EL+KEG++LE+ RL  R  YD+EML  TG C 
Sbjct: 281 PAKHFVTKEENRAGMLQRIQKELTDRLAELDKEGKVLESARLSSRTRYDMEMLRETGMCN 340

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR +  R PG  P TL +Y  +D LL +DESHV+IPQ+ GM  GD  RK TL +Y
Sbjct: 341 GIENYSRIIEDRAPGTRPFTLIDYFGDDWLLMIDESHVSIPQVGGMAEGDKSRKTTLVQY 400

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           GFRLP  +DNRP+ F E+  + P  ++ VSATPG +EL++  G++ EQI RPTGL+DP +
Sbjct: 401 GFRLPCALDNRPMNFAEFEYMYPKQVLFVSATPGDYELKKTNGVVTEQINRPTGLLDPKI 460

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+   + Q++ +   I    + G R+L+T LTK+MA+DLTE+  E  +R +Y+HS++KTL
Sbjct: 461 ELFPIQGQMDVLLYRIEEVVKNGDRVLVTTLTKKMAQDLTEFFIEAGVRAKYLHSDIKTL 520

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER E+IR LR G++DVLVGINLLREGLD+PE  +VAILDADKEGFLR+  SLIQT+GRA+
Sbjct: 521 ERHELIRGLRSGEYDVLVGINLLREGLDLPEVSMVAILDADKEGFLRNYRSLIQTMGRAS 580

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME---VIDPI 736
           RNVN  V+L+AD +T+S+Q AIDET RRR  Q E NK+H I P+SV  KI E   +IDP+
Sbjct: 581 RNVNGTVLLFADNMTESLQKAIDETNRRRGLQEEFNKEHGITPKSVTRKIEEDLRIIDPL 640

Query: 737 LLEDAATTNISIDAQ-----------QLSLSKKKGK----------------------AH 763
                 TT+   D +           Q S  ++K K                      + 
Sbjct: 641 GDIGDDTTDSEDDWKDKPGIRPMEPLQPSNYRRKTKDERRKKAAAPGAPPDKPSKASESK 700

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           L  L +QM  AA  L+FEEAARIRD I+ L +
Sbjct: 701 LADLERQMKEAAARLDFEEAARIRDIIRSLDA 732


>gi|325473927|gb|EGC77115.1| UvrABC system protein B [Treponema denticola F0402]
          Length = 662

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/657 (51%), Positives = 458/657 (69%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY PSGDQ  AI  L  GI + +K Q L GVTGSGKTFTMA +I+A+Q+P ++++
Sbjct: 4   FKLISDYKPSGDQGEAIKALSDGIIAGDKFQTLKGVTGSGKTFTMANIIQAVQKPTLIIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP  D YIEK++SIN++IDR+R 
Sbjct: 64  HNKTLAAQLYREFKTFFPENAVEYFVSYYDYYQPEAYVPARDLYIEKDASINDEIDRLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ER D IVVS+VSCIYG+G  ES+  + + ++ G+++E ++L   L+  QY+R 
Sbjct: 124 SATFSLMERRDVIVVSTVSCIYGLGLPESWRDLRITIEKGENIEIEKLKKQLISLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RG FRV GD +EIFP+++ED A+R+     +I  I +F P++G+ I+  E + IY
Sbjct: 184 DAVLERGRFRVKGDVMEIFPAYMED-AYRLEFDWEEIVRIRKFNPISGEVIQEYEELSIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V P   +  A++ IK EL+ RL  L KEG+LLEA+RL+ R  YD+EML   G C 
Sbjct: 243 PAKHFVMPEDAIPNALERIKNELEERLNVLNKEGKLLEAERLKTRTEYDIEMLSEMGYCP 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  +  R PGEPP TLF Y P+D LLF+DESHVT PQ+  MY GD  RK  L ++
Sbjct: 303 GIENYSAPIANRKPGEPPATLFHYFPDDFLLFMDESHVTFPQVGAMYEGDRSRKQNLVDF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP  +DNRPL+ +E+  +    + VSATPG  E++     IVEQ+IRPTGL+DP +E
Sbjct: 363 GFRLPCALDNRPLKIDEFEKMLNQAVFVSATPGPKEIKYSTR-IVEQVIRPTGLLDPIIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I  +  Q+E +Y E+        R L+  LTK+MAEDLT+YL    ++V+Y+HSEV+T+E
Sbjct: 422 IHKSEGQMEHIYGEVKKRIALNERSLILTLTKKMAEDLTDYLTGLGLKVKYIHSEVETIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI++ LR G+FDVL+GINLLREG+D+PE   + ILDADK GFLRS TSLIQ +GRAAR
Sbjct: 482 RVEILKGLRAGEFDVLIGINLLREGIDLPEVSFIGILDADKIGFLRSTTSLIQIVGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--DPILL 738
           N N KV++YAD I+ +++  I+ET RRR  Q  +NK+H I P+++K+ I +++  +  + 
Sbjct: 542 NENGKVVMYADRISDAMKETIEETNRRRAIQEAYNKEHGITPKTIKKAIEDILTRENEIK 601

Query: 739 EDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           ++AA          L+ L+    K  +K L  QM   AD L FEEAA IRD+I+ +K
Sbjct: 602 KEAALAEAGPLINSLNILNPADRKKLIKKLEAQMAEYADMLMFEEAAVIRDKIEEVK 658


>gi|223982821|ref|ZP_03633045.1| hypothetical protein HOLDEFILI_00319 [Holdemania filiformis DSM
           12042]
 gi|223965220|gb|EEF69508.1| hypothetical protein HOLDEFILI_00319 [Holdemania filiformis DSM
           12042]
          Length = 659

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/657 (51%), Positives = 460/657 (70%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AI +L+ G+ + +K Q+LLG TG+GKTFT+  VIE + RP +V A
Sbjct: 6   FQLVSKYKPTGDQPGAIDKLVAGLAAGKKEQVLLGATGTGKTFTIGNVIERVNRPTLVFA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK  FPHN VEYFVS +DYYQPEAY+P+TDTYIEK +  N+++D +R 
Sbjct: 66  HNKTLAGQLYSEFKELFPHNRVEYFVSNFDYYQPEAYMPKTDTYIEKNAMTNDELDMLRM 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +A  S+LER D I+V+SV+CIY       Y  M   +++GD +++ +LL  LV +QYKR 
Sbjct: 126 AAVNSVLERRDTIIVASVACIYASSDPNQYRDMFFTIRVGDHIDRNDLLRKLVDRQYKRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI-KI 379
           D+   RGTFRV GD+IE+   H +    R+ MF ++IE I E  PLTG K++N  T+  +
Sbjct: 186 DMDRARGTFRVRGDTIEVNMGHTDTFMLRIEMFDDEIERICEVDPLTG-KLQNAYTVYNV 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  S Y  P+  +  A + I+EEL++RL EL+++G+L+E QRLEQR  YDLE L   G C
Sbjct: 245 FPASGYARPKDQIERACQEIEEELELRLAELDRQGKLVEKQRLEQRCRYDLEALREFGVC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS ++ GR  G+ P  LF+Y P+D LL VDESHV++PQI GMY GD  RK TL E
Sbjct: 305 PGIENYSSHIDGRPAGQRPWNLFDYFPKDFLLVVDESHVSLPQIRGMYNGDRARKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP+RFEE+  L    I VSATPG++ELE+  G +VEQIIRPTGL+DP +
Sbjct: 365 YGFRLPSALDNRPMRFEEFETLVNQAIYVSATPGNYELEKVHGEVVEQIIRPTGLLDPEI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R  R Q++D+ DEI+       R+L+T LT +MAEDLT+YL + +++V Y+H E  TL
Sbjct: 425 TVRPTRGQIDDLLDEIHHCIAANERVLITTLTVKMAEDLTDYLKKNDLKVAYLHHETLTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER E IRDLR GK+DVLVGINLLREG+DIPE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERTETIRDLRRGKYDVLVGINLLREGIDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN + +VI+Y D +T S++ AI+ET RRR  Q+ +N++H+I P ++ + I E I     +
Sbjct: 545 RNAHGRVIMYGDKMTDSMKKAIEETNRRRAIQIAYNEEHHITPTTIVKDIGEAIHGKETQ 604

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + A   +   ++     ++K    + +L K+M  AA  L+FE AA +RD +  LK++
Sbjct: 605 EMAARYMKKKSKLGKKEQQK---LIDNLEKEMKDAARVLDFERAAELRDMLLELKAT 658


>gi|228473000|ref|ZP_04057757.1| excinuclease ABC subunit B [Capnocytophaga gingivalis ATCC 33624]
 gi|228275582|gb|EEK14359.1| excinuclease ABC subunit B [Capnocytophaga gingivalis ATCC 33624]
          Length = 667

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/658 (49%), Positives = 453/658 (68%), Gaps = 5/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +D+ P GDQPAAIA L+ GI+ +EK Q LLGVTGSGKTFT+A V+E +Q P +V+A
Sbjct: 3   FQLVSDFKPMGDQPAAIASLVNGINDQEKYQTLLGVTGSGKTFTIANVVEQVQVPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK FFP+NAVEYFVSYYDYYQPEAY+P T  YIEK+ SINE I+RMR 
Sbjct: 63  HNKTLAAQLYNEFKAFFPNNAVEYFVSYYDYYQPEAYIPVTGVYIEKDLSINEDIERMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T +LL  R D +VV+SVSC+YGIG+   + + ++ ++ G ++ + + +  LV+  Y R
Sbjct: 123 STTSALLSGRRDVLVVASVSCLYGIGNPLEFQKNVISIEEGQTLTRTKFMHQLVQSLYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                + G FRV GD I++FP + E    RV  FGN+IE I  F   T + I  ++ + I
Sbjct: 183 TTADFLHGNFRVKGDVIDVFPGYSE-TPIRVHFFGNEIELIESFDRETNKTIERLDKLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A++ I+++L  ++   +  G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLQAAIRDIQDDLVKQIEFFQSVGKTLEAKRLEERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL  R PG  P  L +Y P+D L+ +DESH T+PQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDRRPPGSRPFCLIDYFPKDFLMVIDESHATVPQVRAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL++C G+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQKCGGVYVEQVIRPTGLLDPKI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R ++ Q++D+ +EI    ++  R+L+T LTKRMAE+LT+YL +  +R RY+HS+V TL
Sbjct: 422 EVRPSKNQIDDLLEEIQKCVEEDQRVLVTTLTKRMAEELTKYLTKMEVRCRYVHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  S+ QT+GRAA
Sbjct: 482 ERIEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSARSMTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++ + I+YAD IT S+++ I+ET  RREKQ+ +N  H I PQ + +KI   +    + 
Sbjct: 542 RNIDGRAIMYADKITDSMRVTIEETAYRREKQMNYNLTHGITPQPLHKKIENALSKSPIT 601

Query: 740 DAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +    N     +      +S+ + +  ++  RK M  A+  L+F +AA  RD +K L+
Sbjct: 602 EFHYENTPKKKEHSPTKPMSRGELEKEIQQTRKLMEAASKELDFIQAAHYRDLLKELQ 659


>gi|330752228|emb|CBL87185.1| UvrABC system protein B [uncultured Sphingobacteria bacterium]
 gi|330752271|emb|CBL87227.1| UvrABC system protein B [uncultured Sphingobacteria bacterium]
          Length = 672

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/666 (50%), Positives = 464/666 (69%), Gaps = 13/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI QL++GI+  E+ Q+LLGVTGSGKTFTMA VIE +QRP +++ 
Sbjct: 3   FKLTSKFEPTGDQPNAIKQLVEGINKNEEFQVLLGVTGSGKTFTMANVIEQVQRPTLILT 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLY+EF  FFP NAVE+FVSYYDYYQPEAY+  +DTYIEK+ SINE+ID++R 
Sbjct: 63  HNKTLTAQLYAEFMEFFPDNAVEFFVSYYDYYQPEAYMHGSDTYIEKDLSINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D I+VSSVSCIYG+G+ E +   ++++K G+ + +   L  LV   Y R
Sbjct: 123 RATSSLLSGRRDVIIVSSVSCIYGMGNPEDFKNSVIRIKKGEVIARNAFLYKLVDSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +I   R TFRV GD+++I   ++ D  +RV  FG++IE+I      TG++I +++   I
Sbjct: 183 TEIDFKRATFRVKGDTVDINLPYV-DYGYRVIFFGDEIEKIERIEIETGKRIHDLDHCAI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + Y+ P+  L   +K I++EL       E EGR +EA+R+ +R+T+DLEM+   G C
Sbjct: 242 FPANLYIAPKDRLKFIIKDIEDELYDHEKFFEAEGRFIEAKRVRERVTFDLEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GR PG  P  L +Y PED L+ VDESHVT+PQ+ GM+ GD  RK  L  
Sbjct: 302 NGIENYSRFFDGRKPGTRPFCLLDYFPEDYLMIVDESHVTLPQVRGMWGGDRARKLNLVN 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL FEE+  +   T+ VSATPG++ELEQ +G++VEQI+RPTGL+DPP+
Sbjct: 362 YGFRLPSAIDNRPLSFEEFESVTNQTVYVSATPGNYELEQTEGVVVEQIVRPTGLLDPPI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI+   +   RIL+T LTKRMAE+LT+YL + NI+V+Y+HSEV TL
Sbjct: 422 EVRPSINQIDDLLEEIHGRIEIDERILITTLTKRMAEELTKYLEKLNIKVQYIHSEVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EII++LRLG FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL QT GRAA
Sbjct: 482 DRVEIIKNLRLGIFDVLVGVNLLREGLDMPEVSLVAILDADKEGFLRNNRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VI YAD  T S+Q+ IDET RRR  Q+ +N+K  I P ++ +   ++++   + 
Sbjct: 542 RNSNGLVIFYADKTTDSMQITIDETNRRRATQIAYNEKWGITPTTITKSKEDIVNQRTVL 601

Query: 740 D--AATTNISIDAQQLS---------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           D   A     I+ +++S         +SK K +  +K    +M  AA +L+F  AA+ RD
Sbjct: 602 DIRVAQPKAYIEPEEISVAADPIIAYMSKDKIEDMIKQTEFKMKKAAKDLDFISAAQYRD 661

Query: 789 EIKRLK 794
           E+  LK
Sbjct: 662 ELFALK 667


>gi|311742591|ref|ZP_07716400.1| excision endonuclease subunit UvrB [Aeromicrobium marinum DSM
           15272]
 gi|311314219|gb|EFQ84127.1| excision endonuclease subunit UvrB [Aeromicrobium marinum DSM
           15272]
          Length = 694

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/681 (50%), Positives = 474/681 (69%), Gaps = 18/681 (2%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++   + +   ++ +DY P+GDQPAAIA+L + I    +  +LLG TG+GKT T A + E
Sbjct: 4   VSELQRQVAPIEVVSDYRPAGDQPAAIAELSRRIAEGAQDTVLLGATGTGKTATTAWLAE 63

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VM PNK+LAAQ  +E +   P+NAVEYFVSYYDYYQPEAY+ ++DTYIEK+SS
Sbjct: 64  QIQRPMLVMMPNKLLAAQFANELRELLPNNAVEYFVSYYDYYQPEAYIAQSDTYIEKDSS 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +NE+++R+RHSAT SLL R D IVV++VSCIYG+GS + Y + ++  K+G+ + ++ LL 
Sbjct: 124 VNEEVERLRHSATWSLLTRRDVIVVATVSCIYGLGSAQEYLERMIGFKVGEEMPRERLLR 183

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
           +LV+ QY R D+   RGTFRV GD++EIFP + E  A RV  FG++IE +   +PLTG+ 
Sbjct: 184 TLVEAQYVRNDVATTRGTFRVKGDTVEIFPVYQEH-AVRVEFFGDEIERLMTLHPLTGEV 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           + +   + + + +HY     T+  AM  I+ EL+ RL ELE  G+LLEAQRL  R TYDL
Sbjct: 243 LSDDTELYVGSATHYAAGPQTMQRAMGTIRLELEERLAELEGAGKLLEAQRLRMRTTYDL 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+E  G+C  IENYSR++  R PG P   L +Y P+D +L VDESHVTIPQI  MY GD
Sbjct: 303 EMMEQVGTCAGIENYSRHMDQRGPGTPGHCLLDYFPDDFVLVVDESHVTIPQIGAMYEGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK +L E+GFRLPS MDNRPL+++E+      T+ +SATPGS+E+ +  G +VEQIIR
Sbjct: 363 MSRKRSLVEHGFRLPSAMDNRPLKWDEFLDRIGQTVYLSATPGSYEMGRTGGDVVEQIIR 422

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DP V ++    Q++D+  +I    ++  R+L+T LTK+M+EDLT+YL E  IR R
Sbjct: 423 PTGLIDPEVVVKPTSGQIDDLIGQIRERTERDERVLVTTLTKKMSEDLTDYLLEAGIRTR 482

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSEV TL R+E++R+LR+G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  S
Sbjct: 483 YLHSEVDTLRRVELLRELRMGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGRS 542

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +VI+YAD IT S+  AIDET RRREKQ+ +N +  ++PQ ++++I 
Sbjct: 543 LIQTIGRAARNVSGQVIMYADRITDSMAQAIDETNRRREKQIAYNLEKGVDPQPLRKRIG 602

Query: 731 EVIDPILLEDAATTNI-----------------SIDAQQLSLSKKKGKAHLKSLRKQMHL 773
           ++ D +  EDA T  +                    A +  L   +    ++ L +QM  
Sbjct: 603 DITDMLAREDADTETLLAATGDKRRRGAPVPLGEPSADRGGLPSGELAQLIEQLSEQMRA 662

Query: 774 AADNLNFEEAARIRDEIKRLK 794
           AA  L FE AARIRDE+  LK
Sbjct: 663 AAAELQFEVAARIRDEVSDLK 683


>gi|325958855|ref|YP_004290321.1| UvrABC system protein B [Methanobacterium sp. AL-21]
 gi|325330287|gb|ADZ09349.1| UvrABC system protein B [Methanobacterium sp. AL-21]
          Length = 653

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/656 (50%), Positives = 455/656 (69%), Gaps = 11/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI  + +G +   K Q LLGVTGSGKTFTMA V++ +++P +V++
Sbjct: 4   FKLISPYKPLGDQPKAIKSISEGFNKGLKHQTLLGVTGSGKTFTMANVVKEVKKPTLVIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+ ++DTYI+KE+ IN++ID MRH
Sbjct: 64  HNKTLAAQLYEEFKEFFPDNAVEYFVSYYDYYQPEAYIAQSDTYIDKEAQINDEIDMMRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+SLL R+D IVVSSVSCIYGIGS E Y  +I+ +++GDS  +++++ +L+  QY+R 
Sbjct: 124 STTQSLLTRDDVIVVSSVSCIYGIGSPEDYGGLILSVEVGDSDGREKIIRTLIDMQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EI P+   ++  R+ +FG++++ IS   PL G   R+++ + ++
Sbjct: 184 DIDFTRGKFRVRGDVVEIRPAQ-GNIGIRIELFGDEVDRISLIDPLLGSVKRDMDRVVVF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT +  + +A+  I++EL+ RL  L  + +L+EAQRLEQR  +D+EML+  G C 
Sbjct: 243 PAKHFVTSKDKIESAITNIEKELEERLTVLHSQNKLVEAQRLEQRTRFDMEMLQEVGYCT 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L+GR  GE P TL +Y P+D L  +DESHVT+PQI GMY GD  RK +L ++
Sbjct: 303 GIENYSMHLSGRKWGETPITLMQYFPDDFLTIIDESHVTVPQIGGMYAGDRARKDSLVDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPL F E+  ++   + VSATP  +EL   Q  +VEQIIRPTGLVDP + 
Sbjct: 363 GFRLPSARENRPLNFSEFEMIQNQVLYVSATPAKYELGISQN-MVEQIIRPTGLVDPEII 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    QV+ +   I    ++  R+L+T LTK+MAEDLT+Y  +  I+VRY+HS++ TLE
Sbjct: 422 VKPVVGQVDHLLGAIKAKVEKDQRVLVTTLTKKMAEDLTDYYAKVGIKVRYLHSDITTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI+II +LR G FD LVG+NLLREGLD+PE  LV ILDADKEGFLRSKTSLIQTIGRAAR
Sbjct: 482 RIDIIDELRRGSFDCLVGVNLLREGLDLPEVALVGILDADKEGFLRSKTSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +VI+YAD IT SI  A++ T  RR+ Q+ +NK++ INP+S    + E         
Sbjct: 542 NVEGQVIIYADKITDSISSAVEITNERRKLQMAYNKENGINPKSTVRSVKE--------- 592

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
               +  I      + K +    +K L   M  A+  L+FE AA+IRD+I+ L+ +
Sbjct: 593 KTKKDTKIRDNVKDIPKDELLLLIKDLEADMKKASQKLDFETAAKIRDKIQFLEGA 648


>gi|23465559|ref|NP_696162.1| excinuclease ABC subunit B [Bifidobacterium longum NCC2705]
 gi|81847289|sp|Q8G5L9|UVRB_BIFLO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|23326224|gb|AAN24798.1| excinuclease ABC subunit B [Bifidobacterium longum NCC2705]
          Length = 703

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/683 (51%), Positives = 472/683 (69%), Gaps = 31/683 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AIA+L + I + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 12  FVVKSPYKPSGDQPQAIAELAERIENGENDVVLMGATGTGKTATTAWLIEKLQRPTLIIE 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 72  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK+G  + + +LL   V  QYKR 
Sbjct: 132 QATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKVGQEINRDDLLRQFVAMQYKRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG +I     + I+
Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRISTLHPLTGDEIDEENEVHIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+K I+EEL+ RL EL K+G+ LEAQRL  R TYDLEML   G C 
Sbjct: 251 PASHYVAGPERMERALKTIREELEERLAELRKQGKELEAQRLNMRTTYDLEMLTQVGVCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR  G PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 311 GVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +E+    G +VEQIIRPTGL+DP ++
Sbjct: 371 GFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYEMGLSDG-VVEQIIRPTGLLDPKID 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL 
Sbjct: 430 VRPVKGQIDDLLAEIKARVAKNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD  T++++ AIDET RRR KQ+ +N++H I+P+ + +KI +V D +  ED
Sbjct: 550 NVSGTVIMYADETTEAMRQAIDETDRRRAKQIAYNQEHGIDPKPLIKKISDVNDMLAKED 609

Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771
                           A  T++ +     + + K+ +  LK+             L +QM
Sbjct: 610 VDTQTLLEGGYRNAGKAGNTHLGVPVLDPNEADKRHEEILKAGLPAQDLADLIRQLSEQM 669

Query: 772 HLAADNLNFEEAARIRDEIKRLK 794
           H AA+ L FE AAR+RDEI+ LK
Sbjct: 670 HTAAEQLQFELAARLRDEIRDLK 692


>gi|294056378|ref|YP_003550036.1| excinuclease ABC, B subunit [Coraliomargarita akajimensis DSM
           45221]
 gi|293615711|gb|ADE55866.1| excinuclease ABC, B subunit [Coraliomargarita akajimensis DSM
           45221]
          Length = 687

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/660 (50%), Positives = 459/660 (69%), Gaps = 11/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI  L+  + +  K Q LLGVTGSGKTF+MA VI+ +QRPA++++
Sbjct: 3   FKLSSEYAPQGDQPEAIRSLVDSVRAGNKYQTLLGVTGSGKTFSMANVIQELQRPALIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SSIN++I+R+R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSINDEIERLRI 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +A+ SL+ R D IV++SVSCIYG+GS E +  M++ L  G  + +   L+ LV+  Y+R 
Sbjct: 123 AASSSLISRRDVIVIASVSCIYGLGSPEDFKDMMIPLSRGMELSRDTFLARLVEILYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD ++I+P+++E  A R+  +G++++ I E  P+TG+   +++   +Y
Sbjct: 183 DVDFKRGTFRVRGDVVDIYPAYME-TAIRLEFWGDELDAIFELDPVTGETSGSLDMFHLY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + YVTP+  +  A+  I++EL  R+   E +  LLEAQR++ R  YD+E+L+  G C 
Sbjct: 242 PATQYVTPKDKIERAVGGIRQELDERIAWFESQNLLLEAQRIKMRTEYDIELLQEMGFCT 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGE P  L ++ PED LLFVDESHVT+PQ+  MY GD  RK  L +Y
Sbjct: 302 GIENYSRYLSGRKPGERPFCLIDFFPEDFLLFVDESHVTLPQVRAMYNGDRARKERLVQY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP + EE+  +   TI VSATP + E +     I EQ+IRPTGL+DP +E
Sbjct: 362 GFRLPSALDNRPQKIEEFESITGQTIYVSATPAAHEFD-VSTTIAEQVIRPTGLLDPELE 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + QVEDV  E+  A+  G R L+T LTKRM+EDLT+YL E ++ V Y+HS++  +E
Sbjct: 421 LRPIKGQVEDVIGEVRKASDAGERTLITTLTKRMSEDLTDYLREADLSVEYLHSDIDAIE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+R LR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS TSLIQT GRAAR
Sbjct: 481 RVEILRRLRKGDFDVLIGVNLLREGLDLPEVALVAILDADKEGFLRSSTSLIQTAGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +   +VILYADTIT SI+  ++ T  RREKQ+ +N+ H I P+SV+  + E      L  
Sbjct: 541 HEKGRVILYADTITDSIKHTLETTGYRREKQMAYNEAHGITPRSVERGLDES-----LHA 595

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSL----RKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +   S +  +  ++ +     +  +     ++M  AA  L FE+AA IRD+I  L+S 
Sbjct: 596 PGSKRYSQEEDEPLIAAESDDRDVAEVIAEMEEEMLEAARKLEFEKAALIRDQIDILQSG 655


>gi|126179267|ref|YP_001047232.1| excinuclease ABC subunit B [Methanoculleus marisnigri JR1]
 gi|125862061|gb|ABN57250.1| Excinuclease ABC subunit B [Methanoculleus marisnigri JR1]
          Length = 642

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/659 (50%), Positives = 457/659 (69%), Gaps = 20/659 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F ++ D+ P+G QP AI +L  G+   E+ Q LLGVTGSGKTFT+A V+E +Q+P +
Sbjct: 1   MTAFHLKADFKPTGSQPDAIRKLTDGLSRGEQYQTLLGVTGSGKTFTIANVVEEVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLY+EF++FFP N VEYFVSYYDYYQPE+Y+ + D YIEK++ IN +I++
Sbjct: 61  VIAHNKTLAAQLYNEFRSFFPDNRVEYFVSYYDYYQPESYIAKRDLYIEKDAQINPKIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR +AT SLL R D I+V+SVSCIYG+G+ E++  M  ++K+ D + + +++  LV  Q+
Sbjct: 121 MRLAATASLLSRPDTIIVASVSCIYGLGNPENFQGMGFEMKVRDRMRRDDIIRRLVDIQF 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI ++ G FRV GD+I+I P +  ++  R+ +FG++I+ ISE    +G+++  ++  
Sbjct: 181 ERNDIELMPGRFRVKGDTIDIVPGYFNNI-IRIELFGDEIDRISEIDKTSGERLEAMDYF 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+V P      A+  I++EL+  L  L+    +LEA RL QR  YD++ML  TG
Sbjct: 240 FVYPARHFVAPEEEKERAIASIEQELEEWLPNLD----MLEAHRLRQRTLYDIDMLRETG 295

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           +C+ IENYSR+  GR  GE P  L +Y PED L+ +DESH T+PQ+ GMY GD+ RK +L
Sbjct: 296 TCKGIENYSRHFDGRKAGEQPYCLLDYFPEDFLMVIDESHQTLPQVRGMYNGDYSRKKSL 355

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL+FEE++      I VSATPG +EL++    + EQIIRPTGLVDP
Sbjct: 356 VDYGFRLPSAFDNRPLKFEEFSGYMKNVIFVSATPGDYELKRSS--VAEQIIRPTGLVDP 413

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VEIR    Q+ DV  EI    ++G RILLT LTKR+AE+L+EYL E+ I+ RY+HSE+ 
Sbjct: 414 AVEIRPIEGQIPDVMTEIRATIERGDRILLTTLTKRLAEELSEYLAEQGIKTRYLHSEID 473

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER EIIR LRLGK+DVLVGINLLREGLDIPE G V ILDADKEGFLR   SL+QTIGR
Sbjct: 474 TIERTEIIRQLRLGKYDVLVGINLLREGLDIPEVGFVGILDADKEGFLRDARSLVQTIGR 533

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN+KV+LYADT+T SI+ A+ ET RRR  QL++N +H I PQ+       ++ PI 
Sbjct: 534 AARNVNAKVVLYADTMTDSIKKAMAETGRRRAMQLDYNVRHGITPQT-------IVKPIR 586

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            ++   T+I        + K +    +  L   M  AA+ L FE A  +RD IKRL+  
Sbjct: 587 EKEVDITDIK------HVPKSEVPNLIIELEADMREAAERLEFERAIALRDMIKRLQEG 639


>gi|110669574|ref|YP_659385.1| excinuclease ABC subunit B [Haloquadratum walsbyi DSM 16790]
 gi|109627321|emb|CAJ53811.1| excinuclease ABC chain B [Haloquadratum walsbyi DSM 16790]
          Length = 700

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/654 (50%), Positives = 456/654 (69%), Gaps = 7/654 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AI  L  G  +    Q LLGVTGSGKT T++ V+E +QRP +V+A
Sbjct: 21  FRVDAPFDPAGDQPDAINSLASGFDAGMTEQTLLGVTGSGKTNTVSWVVEEIQRPTLVIA 80

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+  FP NAVEYFVSYYDYYQPEAYV +TDTYI+K+ SINE+IDR+RH
Sbjct: 81  HNKTLAAQLYEEFRELFPDNAVEYFVSYYDYYQPEAYVEQTDTYIDKDLSINEEIDRLRH 140

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL R+D IVV+SVS IYG+G   +Y+ M ++ ++G  + + ELL+ LV   Y+R 
Sbjct: 141 SATRSLLTRDDVIVVASVSAIYGLGDPANYTDMALRFEVGSQINRDELLAQLVDLNYERN 200

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   +GTFRV GD++E++P +    A R+  +G++I+ +S+  PLTG  +     + ++
Sbjct: 201 DVDFQQGTFRVRGDTVEVYPMYGR-YAVRIEFWGDEIDRLSKLDPLTGNVVSEEPAVLVH 259

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HY  P   L +A+  I+  +  R+   E++G L+ AQR+E+R T+D+EML  TG C 
Sbjct: 260 PAEHYSIPEAKLESAIDEIETLMTDRIQYFERQGDLVAAQRIEERTTFDIEMLRETGYCS 319

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +++ R+ G+PP TL +Y P+D L  VDESH T+PQI G + GD  RK +L + 
Sbjct: 320 GIENYSVHMSDRDSGDPPHTLLDYFPDDFLTVVDESHQTLPQIRGQFAGDKSRKDSLVKN 379

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+  DNRPL FEE+     T + VSATPG++E E  +  +VEQI+RPT L+DP +E
Sbjct: 380 GFRLPTAYDNRPLTFEEFQKKTGTRLYVSATPGTYEREHSEQ-VVEQIVRPTHLIDPAIE 438

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +  A  QV+D+ + IN   ++  R+L+T LTKRM+EDLTE+L E  + V YMH E  TLE
Sbjct: 439 VADATGQVDDLLNRINKRVERDERVLVTTLTKRMSEDLTEFLEEAGVDVAYMHDETDTLE 498

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E+IRDLRLG  DVLVGINLLREGLDIPE  LVAILDAD+EGFLRS+T+L+QT+GRAAR
Sbjct: 499 RHELIRDLRLGTIDVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTLVQTMGRAAR 558

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +VILYAD IT S+  AIDET RRR+ Q ++N++H  +PQ++++ I E   P   +D
Sbjct: 559 NVEGEVILYADEITDSMSAAIDETRRRRQIQRKYNEEHGYDPQTIQKAIGETNLPGSDDD 618

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + T        +  + K++ +  +++L ++M  A  +L FE AA IRD+I+ ++
Sbjct: 619 STTRTT-----ETPVDKQEARIQIETLEERMESAVSDLEFELAADIRDQIRDIQ 667


>gi|332827826|gb|EGK00561.1| UvrABC system protein B [Dysgonomonas gadei ATCC BAA-286]
          Length = 671

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/664 (50%), Positives = 456/664 (68%), Gaps = 12/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y+P+GDQPAAIA L +GI      Q LLGVTGSGKTFT+A VI+ + +P +V++
Sbjct: 3   FKLTSYYNPTGDQPAAIAALSEGILQNLPSQTLLGVTGSGKTFTVANVIQNVNKPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P T+TYIEK+ SINE+I+++R 
Sbjct: 63  HNKTLAAQLYSEFKTFFPDNAVEYFVSYYDYYQPEAYIPSTNTYIEKDLSINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           + T SLL  R D IVVSSVSC+YG+G+ E +    + + +G  + +   L +LV   Y R
Sbjct: 123 ATTTSLLSGRRDVIVVSSVSCLYGMGNPEDFENSTISIHVGQKLVRDVFLRALVSALYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +I    G FRV GD++++F ++ + +  RV  +G++IE I    PL+G KI   +  +I
Sbjct: 183 NEIEPKAGNFRVKGDTVDVFLAYGDPIV-RVVFWGDEIESIECLDPLSGVKIDKYDDFRI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +  +  A+  I+ +L  ++  L+  G+ LEA+RL +R+TYDLEM+   G C
Sbjct: 242 YPANLFVTTKDRMVRAIAEIEIDLGRQVDFLQSIGKQLEAKRLYERVTYDLEMIREVGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY   R PG  P  L ++ PED +L +DESHVTIPQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDNRKPGTRPFCLLDFFPEDFMLVIDESHVTIPQIRAMYGGDHSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL+FEE+  L P TI VSATP  +EL + +GI+VEQ+IRPTGL+DPP+
Sbjct: 362 YGFRLPAALDNRPLKFEEFESLVPQTIYVSATPADYELMKSEGIVVEQLIRPTGLLDPPI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ +EI     +  R L+T LTKRMAE+LT YL    ++  Y+HS+V TL
Sbjct: 422 DVRPSLNQIDDLMEEIQTRVDKNERTLVTTLTKRMAEELTAYLLNNGMKCSYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 DRVQIMDDLRSGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----- 734
           RNVN KVI YAD IT+S++  I+ET RRRE Q+ +NK+H I PQ +++    V       
Sbjct: 542 RNVNGKVIFYADKITESMEKTINETNRRREIQMAYNKEHGITPQQIRKARTSVFSLRKEE 601

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                   +D++    S D  Q  ++K + K  ++  RKQM  AA  L F EAA+ RD++
Sbjct: 602 QFSVKSYTQDSSIAIASEDKIQY-MTKDELKKAIEKARKQMSAAAKKLEFLEAAQFRDQV 660

Query: 791 KRLK 794
            +L+
Sbjct: 661 IKLE 664


>gi|224418058|ref|ZP_03656064.1| excinuclease ABC subunit B [Helicobacter canadensis MIT 98-5491]
 gi|253827389|ref|ZP_04870274.1| excinuclease ABC subunit B [Helicobacter canadensis MIT 98-5491]
 gi|313141597|ref|ZP_07803790.1| exinuclease abc subunit b [Helicobacter canadensis MIT 98-5491]
 gi|253510795|gb|EES89454.1| excinuclease ABC subunit B [Helicobacter canadensis MIT 98-5491]
 gi|313130628|gb|EFR48245.1| exinuclease abc subunit b [Helicobacter canadensis MIT 98-5491]
          Length = 658

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/661 (50%), Positives = 463/661 (70%), Gaps = 13/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AI +L   I S  + Q L+GVTGSGKTF+MA +IE +Q P ++M 
Sbjct: 4   FILNSSYKPAGDQPQAIKKLSDFIKSGSQYQTLIGVTGSGKTFSMAHIIEELQMPTLIMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+SEFK FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSINE+++R+R 
Sbjct: 64  HNKTLAAQLFSEFKGFFPKNHVEYFISHFDYYQPEAYIPRQDLFIEKDSSINEELERLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL  +D IVV+SVS  YG+G+ + Y +MI + +IG S  Q+ +L  LV+  YKR 
Sbjct: 124 SATTSLLAYDDTIVVASVSANYGLGNPKEYLEMIEKFEIGSSYNQRNILLRLVEMGYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV G+ I+I+P++ ED A R+  FG+++E+I     +  + ++++E+  +Y
Sbjct: 184 DSFFDRGDFRVNGEVIDIYPAYSEDEAVRLEFFGDELEKIVILDSVDKKPLKSLESFVLY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A + ++     L  A+K I++EL  RL   +KE +++E +RL+ R  +DLEM+E+TG C+
Sbjct: 244 AANPFIVGADRLKVAIKNIEKELAERLNFFKKENKMVEYERLKSRTEFDLEMIESTGICK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDS---LLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENY+R+LTG+ PGE P +L +Y  + +   LL VDESHV++PQ  GMY GD  RK  L
Sbjct: 304 GIENYARHLTGKAPGETPYSLLDYFAQKNKPYLLIVDESHVSLPQFGGMYAGDRSRKEVL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL++EE+    P  + VSATP   ELE       EQ+IRPTGL+DP
Sbjct: 364 VEYGFRLPSALDNRPLKYEEFIHKAPHFLFVSATPAQKELELSGNHTAEQLIRPTGLLDP 423

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
             E+ S   QVE +YDE      +G R+L+T LTK+MAE+LT Y  +  ++VRYMHSE+ 
Sbjct: 424 LYEVLSVENQVEVLYDEAKKVIARGERVLVTALTKKMAEELTRYYNDLGLKVRYMHSEID 483

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER +IIR LR+G+FD+LVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT+GR
Sbjct: 484 AIERNQIIRGLRVGEFDILVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMGR 543

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---D 734
           AARNVN KV+L+AD IT S++ A++ T  RR KQ   NK HNI PQSV  K+ E +   D
Sbjct: 544 AARNVNGKVLLFADKITPSLKKAMEVTDYRRSKQEAFNKAHNIKPQSVSRKLDENLKNQD 603

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             +L + A        ++  + +++ +  +K L K+MH AA  L+FEEAAR+RDEI +++
Sbjct: 604 LGMLYEKAK-------KKEKMPRQEREKLVKELTKKMHEAAKRLDFEEAARLRDEIIKMR 656

Query: 795 S 795
           +
Sbjct: 657 N 657


>gi|23336676|ref|ZP_00121879.1| COG0556: Helicase subunit of the DNA excision repair complex
           [Bifidobacterium longum DJO10A]
 gi|189439606|ref|YP_001954687.1| excinuclease ABC subunit B [Bifidobacterium longum DJO10A]
 gi|189428041|gb|ACD98189.1| DNA excision repair enzyme Helicase subunit [Bifidobacterium longum
           DJO10A]
          Length = 703

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/683 (51%), Positives = 471/683 (68%), Gaps = 31/683 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AIA+L + + + E   +L+G TG+GKT T A +IE +QRP +++ 
Sbjct: 12  FVVKSPYKPSGDQPQAIAELAERVENGENDVVLMGATGTGKTATTAWLIEKLQRPTLIIE 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+RH
Sbjct: 72  PNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK+G  + + +LL   V  QYKR 
Sbjct: 132 QATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKVGQEINRDDLLRQFVAMQYKRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG +I     + I+
Sbjct: 192 DIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRISTLHPLTGDEIDEENEVHIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+K I+EEL+ RL EL K+G+ LEAQRL  R TYDLEML   G C 
Sbjct: 251 PASHYVAGPERMERALKTIREELEERLAELRKQGKELEAQRLNMRTTYDLEMLTQVGVCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+  GR  G PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL E+
Sbjct: 311 GVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++ E+      T+ +SATPG +E+    G +VEQIIRPTGL+DP + 
Sbjct: 371 GFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYEMGLSDG-VVEQIIRPTGLLDPKIN 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+HS+V TL 
Sbjct: 430 VRPVKGQIDDLLAEIKARVAKNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLR 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 490 RVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YAD  T++++ AIDET RRR KQ+ +N++H I+P+ + +KI +V D +  ED
Sbjct: 550 NVSGTVIMYADETTEAMRQAIDETDRRRAKQIAYNQEHGIDPKPLIKKISDVNDMLAKED 609

Query: 741 ----------------AATTNISIDAQQLSLSKKKGKAHLKS-------------LRKQM 771
                           A  T++ +     + + K+ +  LK+             L +QM
Sbjct: 610 VDTQTLLEGGYRNAGKAGNTHLGVPVLDPNEADKRHEEILKAGLPAQDLADLIRQLSEQM 669

Query: 772 HLAADNLNFEEAARIRDEIKRLK 794
           H AA+ L FE AAR+RDEI+ LK
Sbjct: 670 HTAAEQLQFELAARLRDEIRDLK 692


>gi|298377371|ref|ZP_06987324.1| excinuclease ABC subunit B [Bacteroides sp. 3_1_19]
 gi|298265785|gb|EFI07445.1| excinuclease ABC subunit B [Bacteroides sp. 3_1_19]
          Length = 673

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/664 (49%), Positives = 459/664 (69%), Gaps = 11/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA L +GI S    Q LLGVTGSGKTFT+A VI+ +QRP ++++
Sbjct: 3   FEISSSFSPTGDQPEAIAALSEGIKSGVPFQTLLGVTGSGKTFTIANVIKEVQRPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLPSTDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVVSSVSC+YG+    ++++ +  L+ G  +++ +LL   V   Y  
Sbjct: 123 RATASLLSGRKDVIVVSSVSCLYGMADPTAFAEKVTHLERGMRIDRDKLLRRFVDALYVN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
             +    G FRV GD+++IFP+    + +A+R+  + ++I+ IS F PLTG++    + +
Sbjct: 183 NKLEFKSGCFRVNGDTVDIFPAIETFDGMAYRIEFWDDEIDRISSFNPLTGEEYDEQDEL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + +VT +  +N A+  I  +L  ++  L++ G+  EA+RL +R+T+DLEM+   G
Sbjct: 243 NIYPTNLFVTTQERINMAIGQIDVDLGTQVNFLKEIGKPFEAKRLYERVTFDLEMIRELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR  G+ P  L +Y P+D LL VDESHVTIPQI  MY GD+ RK  L
Sbjct: 303 HCSGIENYSRYFDGRAAGDRPFCLLDYFPKDFLLVVDESHVTIPQIRAMYGGDYARKKNL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS MDNRPL F+E+  L P  I VSATP  +EL + +G++VEQ+IRPTGL+DP
Sbjct: 363 VEYGFRLPSAMDNRPLTFDEFESLTPLGIYVSATPADYELIKSEGVVVEQVIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R +  Q++D+ +EI   + +  R+L+T LTKRMAE+LT Y+    +R  Y+HS+V 
Sbjct: 423 IIDVRPSLNQIDDLMEEITQRSAKDERVLVTTLTKRMAEELTTYMTRMGVRCNYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++I+ DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERVQIMDDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---- 733
           AARNVN KVI YAD IT S+Q  +DET RRREKQ+ +N+ H I P+ V +  + ++    
Sbjct: 543 AARNVNGKVIFYADKITASMQQTMDETNRRREKQMAYNEAHGITPKQVMKNSVSMLAEKQ 602

Query: 734 ---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
              +P    +   + ++    Q  +++ + +  ++  RKQM  AA  L+F EAA+ RDE+
Sbjct: 603 QTAEPYAYIEPEPSLVADPVVQY-MNRTQLEKAIERTRKQMTEAAKKLDFIEAAQFRDEL 661

Query: 791 KRLK 794
            +L+
Sbjct: 662 VKLE 665


>gi|189501743|ref|YP_001957460.1| excinuclease ABC subunit B [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497184|gb|ACE05731.1| hypothetical protein Aasi_0293 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 676

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/664 (49%), Positives = 461/664 (69%), Gaps = 11/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQP AI QL+ GI++ E+ Q LLGVTGSGKTFTMA VI+A+ +P +VM+
Sbjct: 3   FKLTAPYQPTGDQPQAIQQLVHGINTGERSQTLLGVTGSGKTFTMANVIQAVNKPTLVMS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E +NFFP NAVEYFVSYYDYYQPEAY+P T+ YIEK+ SIN++++++R 
Sbjct: 63  HNKTLAAQLYGELRNFFPENAVEYFVSYYDYYQPEAYIPATNVYIEKDLSINDELEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT +LL  R D I+V+SVSCIYGIG+ E + + I++L++G+ + + +LL + V   Y R
Sbjct: 123 RATSALLTGRRDVIIVASVSCIYGIGNPEEFGKNILRLQVGERIARNKLLLNFVDMLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +    RG FRV GD+I+IF ++  D A+R   +G++IE I    P TGQK+     + I
Sbjct: 183 NEQEFSRGHFRVKGDTIDIFLAY-ADYAYRFLFWGDEIEAIHSIDPNTGQKLSEERQVLI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VT + TL  A+  I+++L  ++   E EGR  EA+R+++R   DLEM+   G C
Sbjct: 242 FPANLFVTSKDTLQQAIHEIQDDLVAQIKFFENEGRFDEAKRIQERTELDLEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY   R PG  P  L +Y P+D LL +DESHVTIPQI  M+ GD  RK  L +
Sbjct: 302 SGIENYSRYFDKRQPGMRPFCLVDYFPKDYLLMIDESHVTIPQIRAMWGGDRARKVNLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
             FRLP+ +DNRPL F E+  L    I VSATP  +EL   +G++VEQ+IRPTGL+DP +
Sbjct: 362 NAFRLPAALDNRPLNFNEFETLINQVIFVSATPSDYELRHSEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +E+    ++  R+L+T LTKRMAE+LT+YL    ++  Y+HSE+KTL
Sbjct: 422 EVRPSLNQIDDLLNEVADRIKKKERVLITTLTKRMAEELTKYLERAGVKCSYIHSEIKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERI+I+RDLRLG  DVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL+QTIGRAA
Sbjct: 482 ERIDILRDLRLGVIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNVKSLVQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN + KVI+YADTITKS++ AIDET+RRR  Q+E+N KHNI P+SV +    +++   + 
Sbjct: 542 RNEDGKVIMYADTITKSMETAIDETSRRRSIQMEYNLKHNITPRSVHKSREAILEQTKVG 601

Query: 740 DAATT---------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           D             +++ D     + + +    +++  K+M  AAD L+F EA R+++E+
Sbjct: 602 DTPQAAQYYVEKEPSVAADPIIPYMRRDELDKLIQATEKKMLAAADKLDFIEAERLKNEL 661

Query: 791 KRLK 794
           + LK
Sbjct: 662 EALK 665


>gi|330508505|ref|YP_004384933.1| excinuclease ABC subunit B [Methanosaeta concilii GP-6]
 gi|328929313|gb|AEB69115.1| excinuclease ABC, B subunit [Methanosaeta concilii GP-6]
          Length = 658

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/658 (50%), Positives = 449/658 (68%), Gaps = 27/658 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P G QP AI QL+ G+   E+ Q L+GVTGSGKT+T+A VI  +Q+P +V+ 
Sbjct: 18  FRLHSSFAPCGSQPEAIDQLVLGLQRNERFQTLIGVTGSGKTYTVANVISQVQKPTLVIV 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY+EFK FFP N VEYF+SYYDYYQPE+Y+P  D YIEK+S IN +I++MR 
Sbjct: 78  HNKTLAEQLYNEFKEFFPDNRVEYFISYYDYYQPESYIPSKDQYIEKDSLINPKIEQMRL 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T SLL R D IVV+SVSCIYG+G+ E++  M  +LK+ + + +K++L  LV   Y+R 
Sbjct: 138 ATTASLLSRRDVIVVASVSCIYGLGNPENFQSMGFELKVNERISRKDILERLVDILYERS 197

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ +  G FRV G++I+I P +  ++  R+ +FGN +E ISE   +TG+++ ++    +Y
Sbjct: 198 DLDLSPGRFRVNGETIDIIPGYFNNI-IRIELFGNKVERISEVDRITGKRVEDMSYFFVY 256

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HYV P   L  A+  IK EL  RL EL     ++EA RL QR  +D+EM+E TGSC+
Sbjct: 257 PARHYVIPENELKAAVDSIKAELNERLQELG----MIEAHRLRQRTMHDMEMIEETGSCK 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+   R PGEPP  L +Y P+D LL +DESH T+PQ+  M RGD  RK  L +Y
Sbjct: 313 GIENYSRHFDRRQPGEPPYCLIDYFPDDFLLIIDESHQTLPQLRAMNRGDRSRKKNLVDY 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I VSATPG +ELE  +   VEQIIRPTGL+DP VE
Sbjct: 373 GFRLPSSYDNRPLDFEEFERFMRNVIFVSATPGDYELEHSKSP-VEQIIRPTGLLDPEVE 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+DV  EI+    +G R L+T LTKR+AE+LT+YL + +IR RY+HSE++ LE
Sbjct: 432 VRPIDGQVKDVMTEISGVISRGDRALVTTLTKRLAEELTDYLSQNDIRARYLHSEIQPLE 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLGKFDVLVGINLLREGLDIPE G + ILDADKEGFLR + SLIQTIGRA+R
Sbjct: 492 RTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDEKSLIQTIGRASR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK----EKIMEVIDPI 736
           N NS+V+LYAD +T SI+ A++ T RRR  Q+ +N++H I PQ++K    EK++E+ D  
Sbjct: 552 NANSRVVLYADRMTGSIKKAMETTERRRSLQMAYNQEHGIIPQTIKKPIREKVVEITDTR 611

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +  +   N  I+                 L  +M  AA+ L FE A ++RD ++RL+
Sbjct: 612 HIPKSDIPNAIIE-----------------LEAEMMAAAERLEFERAIQLRDTVRRLE 652


>gi|189219825|ref|YP_001940466.1| excinuclease ABC subunit B, helicase [Methylacidiphilum infernorum
           V4]
 gi|189186683|gb|ACD83868.1| Excinuclease ABC subunit B, helicase [Methylacidiphilum infernorum
           V4]
          Length = 691

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/655 (51%), Positives = 449/655 (68%), Gaps = 7/655 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P GDQ  AI +L +GI + +K Q+LLGVTGSGKTFT+AK IE +Q+P +V+ 
Sbjct: 10  FKVVSPFEPCGDQGKAIDELSRGIKAGKKHQVLLGVTGSGKTFTIAKCIEKVQKPTLVIC 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE+K FFP +AVEYFVSY+DYYQPEAY+P TDTYIEK+SS+N +I+R+R 
Sbjct: 70  HNKTLAAQLYSEYKQFFPDSAVEYFVSYFDYYQPEAYIPSTDTYIEKDSSVNTEIERLRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D IVV+SVSCIYG+GS E Y  +  Q+++G ++ + + L+ LV+  Y+R 
Sbjct: 130 SATNSLLTRRDVIVVASVSCIYGLGSPEDYESLCCQVEVGQNISRNQFLAMLVEMLYERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLE-DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           D+ + RG FRV GD +EI   H+  D   R+  FG+ I+ I+EF  LTG+ +  ++   I
Sbjct: 190 DLQLTRGKFRVRGDVVEI--CHVSPDRGLRIEFFGDRIDRITEFELLTGRSLCRLQKELI 247

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A+  I+ EL  R+ ELE +G+LLEAQRL  R   DLEMLE  G C
Sbjct: 248 FPASHFVTTSEKLKRAIGSIRRELDERIAELESKGKLLEAQRLRLRTENDLEMLEELGFC 307

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+GR  G  P TL ++ PED L  +DESH TIPQI GMY GD  RK TL E
Sbjct: 308 NGIENYSRHLSGRPAGSAPYTLLDFFPEDFLTVIDESHATIPQIQGMYEGDMSRKRTLVE 367

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL F E+       I VSATPG +EL Q  G ++EQIIRPTGL+DP V
Sbjct: 368 HGFRLPSALDNRPLSFSEFEAKIGQVIYVSATPGEYELRQTGGQVIEQIIRPTGLLDPEV 427

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++DV  E +   ++G R+L+  LTK+ AEDL++YL E   +VRY+HSE+  +
Sbjct: 428 EVRPLEGQIDDVIKESSRRIKEGQRVLVLTLTKQTAEDLSDYLRELGFKVRYLHSELDAI 487

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R LR G FDVLVGINLLREGLD+PE  LV ILDADKEG+LRS+ SLIQ  GRAA
Sbjct: 488 ERVEILRGLRAGDFDVLVGINLLREGLDLPEVSLVCILDADKEGYLRSEKSLIQIAGRAA 547

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           R+   KVILYAD +T+SI+  I  T  RR KQL++N++H + P+ V+ K +  +  ++  
Sbjct: 548 RHEKGKVILYADVMTQSIKKLIAVTNYRRAKQLQYNEEHGVTPRGVRAKELVSLHGLIRS 607

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +        D Q    +K      +K L   M  A+  L FE+AA  RD+I+ LK
Sbjct: 608 EEKEIVHFKDTQ----AKMDYMELIKELGAAMIEASAKLEFEKAALFRDQIEELK 658


>gi|268680222|ref|YP_003304653.1| excinuclease ABC subunit B [Sulfurospirillum deleyianum DSM 6946]
 gi|268618253|gb|ACZ12618.1| excinuclease ABC, B subunit [Sulfurospirillum deleyianum DSM 6946]
          Length = 658

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/659 (50%), Positives = 462/659 (70%), Gaps = 7/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y PSGDQP AI +L   I    + Q L+GVTGSGKT+TMA++I+ ++ P ++M 
Sbjct: 4   FFLESPYQPSGDQPRAIERLSASIKKGNRYQTLIGVTGSGKTYTMAQIIQKLKMPTLIMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR+D +IEK+SSINE+++R+R 
Sbjct: 64  HNKTLAAQLYSEFKGFFPKNHVEYFISYYDYYQPEAYIPRSDLFIEKDSSINEELERLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL  +D I V+SVS  YG+G+   Y +M+  ++ G+S+ QK+LL  LV   YKR 
Sbjct: 124 SATASLLSYDDVICVASVSANYGLGNPHEYKKMVQIIEKGESINQKKLLLRLVDMGYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD ++IFP++ E+ A RV  FG+++E I  F     +K++++  + +Y
Sbjct: 184 DTFFDRGCFRVSGDVVDIFPAYNEEEAIRVEFFGDEVESIYYFDVFLNKKLQSLPKVVLY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A + ++     L  A+K I++EL  RL   +KE +L+E QRL+QR+ +DLEML++TG+C+
Sbjct: 244 AANQFIVGHERLQKAIKSIEQELDERLAYFQKEDKLVEYQRLKQRVEFDLEMLQSTGACK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+RYLTG  PG  P +LF+Y   + ++ L+ VDESHV++PQ  GM+ GD  RK  L
Sbjct: 304 GVENYARYLTGIEPGATPYSLFDYFEAMGKEYLVIVDESHVSLPQFRGMFAGDRSRKEVL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL F+E+    P  + VSATP   EL      + EQIIRPTGL+DP
Sbjct: 364 VEYGFRLPSALDNRPLMFDEFINKAPRYLFVSATPKELELGLSGENVAEQIIRPTGLLDP 423

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VEI S++ QVE +YD I     +  ++L+TVLTK+MAE+LT Y  +  ++++YMHS++ 
Sbjct: 424 EVEILSSKNQVETLYDRIKEVTCKDEKVLVTVLTKKMAEELTRYYADLGMKIKYMHSDID 483

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER +IIR LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT+GR
Sbjct: 484 AIERNQIIRSLRVGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMGR 543

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N +V+++A+ IT S+Q AI+ T RRR  Q   N++H I P S   K+ E +   L
Sbjct: 544 AARNLNGRVLMFAEKITDSMQKAIETTLRRRALQEAFNQEHGITPTSTTRKMDENLK--L 601

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            E +   N      ++  S+K  K  +  L K MH AA  L FE+AA++RD+I++LK +
Sbjct: 602 EEHSDIYNTYDKKDKIPPSEK--KKIIAELTKAMHEAAKILEFEKAAKLRDQIEKLKKA 658


>gi|150006946|ref|YP_001301689.1| excinuclease ABC subunit B [Parabacteroides distasonis ATCC 8503]
 gi|255016032|ref|ZP_05288158.1| excinuclease ABC subunit B [Bacteroides sp. 2_1_7]
 gi|256842055|ref|ZP_05547560.1| excinuclease ABC, B subunit [Parabacteroides sp. D13]
 gi|149935370|gb|ABR42067.1| excinuclease ABC, B subunit [Parabacteroides distasonis ATCC 8503]
 gi|256736371|gb|EEU49700.1| excinuclease ABC, B subunit [Parabacteroides sp. D13]
          Length = 673

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/664 (49%), Positives = 459/664 (69%), Gaps = 11/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA L +GI S    Q LLGVTGSGKTFT+A VI+ +QRP ++++
Sbjct: 3   FEISSSFSPTGDQPEAIAALSEGIKSGVPFQTLLGVTGSGKTFTIANVIKEVQRPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLPSTDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVVSSVSC+YG+    ++++ +  L+ G  +++ +LL   V   Y  
Sbjct: 123 RATASLLSGRKDVIVVSSVSCLYGMADPTAFAEKVTHLERGMRIDRDKLLRRFVDALYVN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
             +    G FRV GD+++IFP+    + +A+R+  + ++I+ IS F PLTG++    + +
Sbjct: 183 NKLEFKSGCFRVNGDTVDIFPAIETFDGMAYRIEFWDDEIDRISSFNPLTGEEYDEQDEL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + +VT +  +N A+  I  +L  ++  L++ G+  EA+RL +R+T+DLEM+   G
Sbjct: 243 NIYPTNLFVTTQERINMAIGQIDVDLGTQVNFLKEIGKPFEAKRLYERVTFDLEMIRELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR  G+ P  L +Y P+D LL VDESHVTIPQI  MY GD+ RK  L
Sbjct: 303 HCSGIENYSRYFDGRAAGDRPFCLLDYFPKDFLLVVDESHVTIPQIRAMYGGDYARKKNL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS MDNRPL F+E+  L P  I VSATP  +EL + +G++VEQ+IRPTGL+DP
Sbjct: 363 VEYGFRLPSAMDNRPLTFDEFESLTPLGIYVSATPADYELIKSEGVVVEQVIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R +  Q++D+ +EI   + +  R+L+T LTKRMAE+LT Y+    +R  Y+HS+V 
Sbjct: 423 IIDVRPSLNQIDDLMEEITQRSAKDERVLVTTLTKRMAEELTTYMTRMGVRCNYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++I+ DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERVQIMDDLRNGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---- 733
           AARNVN KVI YAD IT S+Q  +DET RRREKQ+ +N+ H I P+ V +  + ++    
Sbjct: 543 AARNVNGKVIFYADKITASMQQTMDETNRRREKQMAYNEAHGITPKQVMKNSVSMLAEKQ 602

Query: 734 ---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
              +P    +   + ++    Q  +++ + +  ++  RKQM  AA  L+F EAA+ RDE+
Sbjct: 603 QTAEPYAYIEPEPSLVADPVVQY-MNRTQLEKAIERTRKQMTEAAKKLDFIEAAQFRDEL 661

Query: 791 KRLK 794
            +L+
Sbjct: 662 VKLE 665


>gi|320535927|ref|ZP_08035995.1| excinuclease ABC subunit B [Treponema phagedenis F0421]
 gi|320147231|gb|EFW38779.1| excinuclease ABC subunit B [Treponema phagedenis F0421]
          Length = 662

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/658 (50%), Positives = 455/658 (69%), Gaps = 7/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY PSGDQP AI QL  G+ + ++ Q L GVTGSGKTFTMA +I+A+Q+P ++++
Sbjct: 4   FELISDYAPSGDQPEAIRQLADGVLAGDRFQTLKGVTGSGKTFTMANIIQAVQKPTLIIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP  D YIEK++SIN++IDR+R 
Sbjct: 64  HNKTLAAQLYREFKGFFPHNAVEYFVSYYDYYQPEAYVPARDLYIEKDASINDEIDRLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ER D IVVS+VSCIYG+G  ES+  + + ++ G +V+ + L   LV  QY+R 
Sbjct: 124 SATFSLMERRDVIVVSTVSCIYGLGLPESWRDLRITIEKGQTVDMENLKRQLVSLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RG FR+ GD +E+FP+++E+ A+R+     +I  I  F+P++G+     E + IY
Sbjct: 184 DAVLERGRFRLKGDVLEVFPAYMEE-AYRIEFDWEEIVRIRRFHPISGEISTEFEELSIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V     + TA+  I++EL  RL  L  + +LLEA+RL+ R  YD+EML   G C 
Sbjct: 243 PAKHFVLKEDAIPTALVRIRKELNDRLAVLRAQNKLLEAERLKTRTEYDIEMLSEMGYCP 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  +  R PGEPP TLF Y P+D LLF+DESHVT PQ+  MY GD  RK  L ++
Sbjct: 303 GIENYSAPIANRKPGEPPATLFHYFPKDFLLFMDESHVTFPQVGAMYEGDRSRKQNLVDF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP  +DNRPL+  E+  +    I VSATPG  E+ Q    IVEQ+IRPTGL+DP +E
Sbjct: 363 GFRLPCALDNRPLKINEFESMLNQAIFVSATPGPKEI-QYSTRIVEQLIRPTGLLDPILE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +  +  Q+ED+Y EI      G R L+  LTK+MAEDLT+YL    ++V+Y+HSE++T+E
Sbjct: 422 VHKSEGQMEDIYREIQKRIVVGERSLILTLTKKMAEDLTDYLLGLGLKVKYIHSEIETIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI++ LR G+FDVL+GINLLREG+D+PE   + ILDADK GFLRS TSLIQ +GRAAR
Sbjct: 482 RVEILKGLRAGEFDVLIGINLLREGIDLPEVSFIGILDADKIGFLRSTTSLIQIVGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N N KVI+Y+D I+ +++  I ET RRR  Q  +N  H I P+++K+ I +++   + + 
Sbjct: 542 NENGKVIMYSDRISDAMRETITETERRRSIQQAYNAAHGITPKTIKKAIEDILVRENELK 601

Query: 738 LEDA-ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            E A A T   I++  L +   + K  +K L +QM   AD L FEEAA +RD+I+ +K
Sbjct: 602 KEAAQAETEPLINSFNLLVPADRKKL-IKKLEQQMSAFADELRFEEAAAVRDKIEEIK 658


>gi|242310406|ref|ZP_04809561.1| exinuclease abc subunit b [Helicobacter pullorum MIT 98-5489]
 gi|239522804|gb|EEQ62670.1| exinuclease abc subunit b [Helicobacter pullorum MIT 98-5489]
          Length = 658

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/662 (50%), Positives = 460/662 (69%), Gaps = 15/662 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AI +L   I    + Q L+GVTGSGKTF+MA +I+ +Q P ++M 
Sbjct: 4   FVLNSSYKPAGDQPQAIEKLSGFIKDGSQYQTLIGVTGSGKTFSMAHIIQELQMPTLIMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+SEFK FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSIN++++R+R 
Sbjct: 64  HNKTLAAQLFSEFKGFFPKNHVEYFISHFDYYQPEAYIPRQDLFIEKDSSINDELERLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL  +D IVV+SVS  YG+G+ + Y +MI + ++G+S  QK +L  LV+  YKR 
Sbjct: 124 SATTSLLAYDDTIVVASVSANYGLGNPKEYLEMIEKFEVGESYHQKSMLLRLVEMGYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV G+ ++I+P++ ED   R+  FG+++E+I+    +  + IRN+E+  +Y
Sbjct: 184 DSFFDRGDFRVNGEVVDIYPAYSEDEVVRLEFFGDELEKITILDSIDKKPIRNLESFVLY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A + ++     L  A+K I++EL  RL   +KE +++E +RL+ R  +DLEM+E+TG C+
Sbjct: 244 AANPFIVGADRLKIAIKSIEKELAERLDFFKKENKMVEYERLKSRTEFDLEMIESTGICK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDS---LLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENY+R+LTG+ PGE P +L +Y  + +   LL VDESHV++PQ  GMY GD  RK  L
Sbjct: 304 GIENYARHLTGKKPGETPYSLLDYFAQKNKPYLLIVDESHVSLPQFGGMYAGDRSRKEVL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL++EE+    P  + VSATP   ELE  +  I EQ+IRPTGL+DP
Sbjct: 364 VEYGFRLPSALDNRPLKYEEFIHKAPHFLFVSATPAQKELELSKNHIAEQLIRPTGLLDP 423

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
             E+ S   QVE +YDE      +G ++L+T LTK+MAE+LT Y  +  ++VRYMHSE+ 
Sbjct: 424 IYEVLSVENQVEVLYDEAKKVIARGEKVLVTSLTKKMAEELTRYYSDLGLKVRYMHSEID 483

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER +IIR LR+G+FD+LVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT+GR
Sbjct: 484 AIERNQIIRGLRVGEFDILVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMGR 543

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--- 734
           AARNVN +V+L+AD IT S++ A++ T  RR KQ   N+ HNI PQSV  K+ E +    
Sbjct: 544 AARNVNGRVLLFADKITPSLKKAMEVTDYRRAKQEAFNQAHNITPQSVSRKLDENLKNQD 603

Query: 735 -PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             +L E A         ++  L        +K L K+MH AA  L+FEEAAR+RDEI ++
Sbjct: 604 LGMLYEKAKKKEKMPKIEREKL--------VKELTKKMHEAAKRLDFEEAARLRDEIAKM 655

Query: 794 KS 795
           +S
Sbjct: 656 RS 657


>gi|193214950|ref|YP_001996149.1| excinuclease ABC subunit B [Chloroherpeton thalassium ATCC 35110]
 gi|193088427|gb|ACF13702.1| excinuclease ABC, B subunit [Chloroherpeton thalassium ATCC 35110]
          Length = 684

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/670 (48%), Positives = 466/670 (69%), Gaps = 15/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQP AI +L +G+   +K Q LLGVTGSGKTF+++ VI  + +P +V++
Sbjct: 10  FELSCPYSPAGDQPKAIKELTEGVLRGDKHQTLLGVTGSGKTFSISNVIANVNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYF+SYYD+YQPEAY+P TD YI K+  IN++IDR+R 
Sbjct: 70  HNKTLAAQLYGEFKQFFPNNAVEYFISYYDFYQPEAYLPSTDKYIAKDFRINDEIDRLRL 129

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT ++L  R D I+VSSVSCIYG+GS + ++  I+ L+ G    ++ELL+ LV   Y R
Sbjct: 130 RATSAVLSGRKDVIIVSSVSCIYGLGSPDEWASQIIFLETGMEKSRRELLNELVSIHYTR 189

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ ++RG FRV GD I+I P++ ED   R+  FG++I+ +  F   TG     V    I
Sbjct: 190 NDVELVRGKFRVRGDIIDIVPAY-EDYGVRIEFFGDEIDRLQLFEIKTGDVFEEVSDFAI 248

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +VT    L+  +K I++EL  RL  L  E +L+EAQRLE+R  YD+EM++  G C
Sbjct: 249 YPAKQFVTMEENLHKGIKAIEKELASRLNVLRSEDKLVEAQRLEERTRYDIEMMKELGYC 308

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEY-IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
             +ENYSR+L+GR  GE P  L +Y I  D L+ +DESHVT+PQI  MY GD  RK+ L 
Sbjct: 309 SGVENYSRHLSGRGEGEKPYCLLDYFIDNDYLVVIDESHVTLPQIRAMYAGDRSRKSILV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPS +DNRPL+FEE+  + P TI VSATPG +EL+Q  G++VEQIIRPTGL+DP 
Sbjct: 369 EHGFRLPSALDNRPLKFEEFQAMTPQTIYVSATPGDYELQQSGGVVVEQIIRPTGLLDPS 428

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +++R  + Q++D+  EI + A+ G +IL   LTKRM+EDL +YL +  +R +Y+HSE+K+
Sbjct: 429 IDVRPVKNQIDDLLAEIRMRAKIGEKILTMTLTKRMSEDLQDYLEKVGVRSQYLHSEIKS 488

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L+R++I+R+LR+G+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR K SL+Q  GRA
Sbjct: 489 LDRVQILRELRMGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRDKKSLLQISGRA 548

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN N KVI YAD +T+S++  I+ET RRR  Q+ +N+ + I P+++ + + +V+    +
Sbjct: 549 ARNSNGKVIFYADKMTESMRAVINETERRRAIQIAYNEANGIVPKTIHKSLEQVMTSTSV 608

Query: 739 EDA------ATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
            DA      A   +    + L       ++K++  A +  + ++M  AA+  ++E+AA +
Sbjct: 609 ADAQRRQKRARMQVESGVENLLEEVIEKMTKEEKLAMIDQMTEEMVDAAERTDYEKAAYL 668

Query: 787 RDEIKRLKSS 796
           RDEI+RL+++
Sbjct: 669 RDEIRRLQNA 678


>gi|332886177|gb|EGK06421.1| UvrABC system protein B [Dysgonomonas mossii DSM 22836]
          Length = 673

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/664 (50%), Positives = 457/664 (68%), Gaps = 11/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQPAAIA L +G+      Q LLGVTGSGKTFT+A VI+ + +P +V++
Sbjct: 3   FKLTSNYSPTGDQPAAIAALSEGVLQDIPFQTLLGVTGSGKTFTVANVIQNVDKPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P T+TYIEK+ SIN++I+++R 
Sbjct: 63  HNKTLAAQLYSEFKTFFPDNAVEYFVSYYDYYQPEAYIPSTNTYIEKDLSINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           + T SLL  R D IVVSSVSC+YG+G+ E +    + LK+G  + +   L SLV   Y R
Sbjct: 123 ATTTSLLSGRRDIIVVSSVSCLYGMGNPEDFESSTISLKVGQKIVRDVFLRSLVSALYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++    G FRV GD++++F ++ + +  RV  +G++IE I    PLTG KI +    +I
Sbjct: 183 NEVDPKAGNFRVKGDTVDVFLAYGDPIV-RVVFWGDEIESIECLDPLTGIKIDSYNDFRI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +  ++ A+  I+ +L  ++   +  G+ LEA+RL +R+TYDLEM+   G C
Sbjct: 242 YPANLFVTTKDRMDRAIGEIEIDLGRQVEFFQSIGKPLEAKRLYERVTYDLEMIREVGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY   R PG  P  L ++ P+D LL VDESHVTIPQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDNRKPGTRPFCLLDFFPDDFLLVVDESHVTIPQIRAMYGGDHSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL+FEE+  L P TI VSATP  +EL + +G+IVEQ+IRPTGL+DPP+
Sbjct: 362 YGFRLPAALDNRPLKFEEFESLVPQTIYVSATPADYELLKSEGVIVEQLIRPTGLLDPPI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ +EI +  +Q  R L+T LTKRMAE+LT YL    I   Y+HS+V TL
Sbjct: 422 DVRPSLNQIDDLMEEIQMRVEQNERTLVTTLTKRMAEELTNYLSNNGISCSYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +RI+I+  LR G+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 DRIQIMDSLRTGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI YAD IT S+   I+ET RRREKQ+ +N++H I P+ +++    V      E
Sbjct: 542 RNVNGKVIFYADKITDSMAKTINETNRRREKQMAYNEEHGIVPKQIQKARTSVFTQRKGE 601

Query: 740 DAA---------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           D+A           +I+ + Q   +S ++ K  +   +KQM  AA  L F EAA+ RD++
Sbjct: 602 DSAIPQPYSQDSILSIASEDQMQYMSAEELKKAIAKAKKQMSAAAKKLEFLEAAQYRDQV 661

Query: 791 KRLK 794
            +L+
Sbjct: 662 IKLE 665


>gi|322368181|ref|ZP_08042750.1| excinuclease ABC subunit B [Haladaptatus paucihalophilus DX253]
 gi|320552197|gb|EFW93842.1| excinuclease ABC subunit B [Haladaptatus paucihalophilus DX253]
          Length = 685

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/656 (50%), Positives = 452/656 (68%), Gaps = 7/656 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F++   + P+GDQP AI QL +G     + Q LLGVTGSGKT T++  IE +Q+P +V
Sbjct: 18  TDFRVDAPFDPAGDQPEAIEQLAEGFDEGMEKQTLLGVTGSGKTNTVSWTIEEVQKPTLV 77

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQLY EF+N FP NAVEYFVSYYDYYQPEAYV +TDTYI+K++SINE+IDR+
Sbjct: 78  IAHNKTLAAQLYEEFRNLFPDNAVEYFVSYYDYYQPEAYVEQTDTYIDKDASINEEIDRL 137

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSATRSLL R+D IVV+SVS IYG+G  ++Y  M ++L++G+ + + ELL+ LV   Y 
Sbjct: 138 RHSATRSLLTRDDVIVVASVSAIYGLGDPQNYEDMRLRLEVGEEIGRDELLARLVDLNYD 197

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   +GTFRV GD++EIFP +    A RV ++G++I+ I +  PL G+       + 
Sbjct: 198 RNDMDFTQGTFRVRGDTVEIFPMYGR-YAVRVELWGDEIDRIVKIDPLEGEVKSQEPAVL 256

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++   HY  P  T+  A+  I+E+L+ R+   E+ G L+ AQR+E+R T+DLEM++  G 
Sbjct: 257 VHPAEHYSIPEETMAEAIAEIEEDLERRIRYFERNGDLVAAQRIEERTTFDLEMMKEAGY 316

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYS Y T R  G+ P TL +Y P+D L  +DESH T+PQI G + GD  RK +L 
Sbjct: 317 CSGIENYSVYFTEREVGDAPYTLLDYFPDDFLCVIDESHQTVPQIRGQFAGDKSRKDSLV 376

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E GFRLP+  DNRPL FEE+      T+ +SATP  +E EQ +  IVEQI+RPT LVDP 
Sbjct: 377 ENGFRLPTAYDNRPLTFEEFEEKSAKTLYISATPADYEREQSEQ-IVEQIVRPTHLVDPK 435

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+  A  Q++D+   I+   ++  R+L+T LTKRMAEDLTEYL E  + V YMH E  T
Sbjct: 436 VEVADASGQIDDLMARIDDRIERDERVLVTTLTKRMAEDLTEYLEEAGVAVEYMHDETDT 495

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER E++R LRLG+FDVLVGINLLREGLDIPE  +VAILDAD++GFLRS+T+L+QT+GRA
Sbjct: 496 LERHELVRGLRLGEFDVLVGINLLREGLDIPEVSMVAILDADQQGFLRSETALVQTMGRA 555

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN +V+LYAD +T +++ A+DET RRR  Q E N++H   PQ++++ + E   P   
Sbjct: 556 ARNVNGEVVLYADEVTDAMESAMDETGRRRRIQREFNEEHGYEPQTIEKAVSEANLP--- 612

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              + T+     +    + ++    +  L  +M  AA+NL FE AA IRD I+ L+
Sbjct: 613 --GSKTDTGGVTRNSPETDEEALEQISRLEDRMEEAANNLEFELAADIRDRIRELR 666


>gi|150400336|ref|YP_001324103.1| excinuclease ABC subunit B [Methanococcus vannielii SB]
 gi|150013039|gb|ABR55491.1| excinuclease ABC, B subunit [Methanococcus vannielii SB]
          Length = 649

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/660 (50%), Positives = 459/660 (69%), Gaps = 29/660 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI--HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           F++++D+ P G QP+AI +L+  +  +     Q LLGVTGSGKTFT+A VIE +++P +V
Sbjct: 6   FRLKSDFEPKGSQPSAIDKLVFDLTKNPENSKQTLLGVTGSGKTFTIANVIEKVKKPTLV 65

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQLY+EFK FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +I++M
Sbjct: 66  IAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQM 125

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R  A+ ++L R D I+V+SVSCIYG+GS + + +M  +LK G  +++ E++  LV  QY+
Sbjct: 126 RLRASSAILSRRDVIIVASVSCIYGLGSPKLFKEMGFELKKGSKIKRAEIIEKLVDIQYE 185

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D  ++ G FRV GD+I+I P + +D   R+ +FG++I+ I E       K   + +  
Sbjct: 186 RNDTELVSGRFRVKGDTIDIIPGY-QDETIRLELFGDEIDRIYELDSKNMTKKHELASFY 244

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y   H+VT   +   A+K I +EL   L  LE    +L+A RL+Q+  YD+EM+E TGS
Sbjct: 245 MYPAKHFVTTEESKKNAIKSILKELDEWLPHLE----MLKANRLKQKTLYDIEMIEETGS 300

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+   R   EP   L +Y P+D L+ +DESH TIPQI GMY+GD  RK +L 
Sbjct: 301 CKGIENYSRHFENRGENEPAYCLLDYFPDDFLIVIDESHQTIPQIRGMYKGDRSRKKSLI 360

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+FEE+       I VSATPG +ELE+   I VEQIIRPTGL+DP 
Sbjct: 361 DYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELEKSNQI-VEQIIRPTGLLDPK 419

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VEIR  + QVED+ +E     ++G R+L+T LTKR++E+LTEYL ++N++ RY+HS++ T
Sbjct: 420 VEIRPIKGQVEDIINETEKMVKRGERVLITTLTKRLSEELTEYLAQKNVKARYLHSDIDT 479

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR+LRLGKFD LVGINLLREGLDIPE G V ILDADKEGFLR+  SLIQTIGRA
Sbjct: 480 IERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRA 539

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS----VKEKIMEVID 734
           ARN NSKV+LYAD IT SIQ A+ ET RRR+ Q E+N KH+I P++    +++K+++++D
Sbjct: 540 ARNANSKVVLYADKITDSIQKAVFETKRRRKIQEEYNIKHDITPKTIVKPIRDKVVDIVD 599

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              +  +   N+ ++                 L  +M+LAA+ L FE A +IRD+I +LK
Sbjct: 600 IKHIPKSEIPNVIVE-----------------LESEMYLAAEALEFERAIQIRDKIAKLK 642


>gi|260773212|ref|ZP_05882128.1| excinuclease ABC subunit B [Vibrio metschnikovii CIP 69.14]
 gi|260612351|gb|EEX37554.1| excinuclease ABC subunit B [Vibrio metschnikovii CIP 69.14]
          Length = 600

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/596 (54%), Positives = 433/596 (72%), Gaps = 17/596 (2%)

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            K+FFPHNAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR SAT++LLER D 
Sbjct: 1   MKSFFPHNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNSHIEQMRLSATKALLERKDA 60

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           I+V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R D+   RG FRV 
Sbjct: 61  IIVASVSAIYGLGDPDSYLKMMLHLRRGDVLNQRDMLRRLAELQYSRNDVAFERGQFRVR 120

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKIYANSHYVTPRPT 391
           G+ I+IFP+  E  A RV MF ++IE IS F PLTG  + R++    +Y  +HYVTPR  
Sbjct: 121 GEVIDIFPAESEQEAVRVEMFDDEIECISLFDPLTGVIRQRDLARFTVYPKTHYVTPRER 180

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           +  A++ IK+EL++R   L    +LLE QR+ QR  +D+EM+   G C  IENYSRYL+G
Sbjct: 181 ILDAIEQIKQELQLRRQTLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSG 240

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
           R+ GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E+GFRLPS +DNR
Sbjct: 241 RSAGEPPPTLFDYLPHDGLLVIDESHVTVPQIGAMYKGDRSRKETLVEFGFRLPSALDNR 300

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           PL+FEE+  L P TI VSATP ++ELE+  G +VEQ++RPTGL+DP +E+R   TQV+D+
Sbjct: 301 PLKFEEFEALAPQTIFVSATPSAYELEKSAGDVVEQVVRPTGLLDPEIEVRPVATQVDDL 360

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             EI + A +  R+L+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+ER+EIIRDLRLG
Sbjct: 361 LSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTVERVEIIRDLRLG 420

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
            FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR++  K ILY D
Sbjct: 421 VFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARHLRGKAILYGD 480

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
            ITKS++ AIDET RRREKQ  +N++  I PQ+++  I ++++   L DA        ++
Sbjct: 481 NITKSMRKAIDETERRREKQQAYNQQRGIEPQALRRSIKDIME---LGDATKPKQQKASK 537

Query: 752 QLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            + L+K             ++ +  +  L  +M+  A +L FE AA+ RD+I +L+
Sbjct: 538 VVPLAKVAEPGASYDLLTPQQLEKQIMKLEAEMYKHAQDLEFELAAQKRDQITQLR 593


>gi|329765462|ref|ZP_08257038.1| excinuclease ABC subunit B [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137900|gb|EGG42160.1| excinuclease ABC subunit B [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 650

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/660 (50%), Positives = 454/660 (68%), Gaps = 20/660 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI  L++G+  R+ +Q LLGVTGSGKTF++A VI    +  +V++
Sbjct: 7   FELVSEFEPTGDQPQAIDLLVEGVKKRQ-IQTLLGVTGSGKTFSIANVIARTGKNTLVIS 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K FFP N V YFVSYYDYYQPE+Y+P+TDTYIEK++ INE+I+++R 
Sbjct: 66  HNKTLAAQLYSELKQFFPKNNVGYFVSYYDYYQPESYLPQTDTYIEKDTQINEKIEKLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT  LL     I+VS+VSCIY +G+ + +  + + +  GD +++ +L+   +  +Y+R 
Sbjct: 126 EATAMLLSGEPTIIVSTVSCIYSLGNPKDWDDLAITINSGDVIKRSDLIKKFIDARYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I  G FRV GD+I+I P++ ED+  R+SMFG+D+E+I     ++ ++ R +  IKI+
Sbjct: 186 DTEIAPGNFRVKGDTIDIIPAYSEDIV-RISMFGDDVEKIMLLDNISLKEKRKINQIKIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HY+  +     A++ IK+EL+ RL EL +    LE QRLE R  YDLEM+E  G C 
Sbjct: 245 PAKHYLIAKDVREKAVRSIKDELEKRLPELNE----LEKQRLEMRTKYDLEMIEELGYCS 300

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GRNPGE    L ++  +D LL +DESHVT+PQ+ GMY+GD+ RK  L  Y
Sbjct: 301 GIENYSRHFDGRNPGEKAFCLMDFFGDDYLLVIDESHVTLPQLHGMYKGDYSRKKELVTY 360

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+      TI VSATP  +E ++    I EQ++RPTGL+DP VE
Sbjct: 361 GFRLPSAYDNRPLKFEEFEGYLKNTIFVSATPSEYE-KKISAQIAEQLVRPTGLLDPVVE 419

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EI   A +  R+L+T LTKRMAEDL EYL ++ +RVRYMHSE++ L+
Sbjct: 420 IRPTKDQMDDLIQEIAKRAVKNERVLVTTLTKRMAEDLAEYLSKKQVRVRYMHSEIEGLQ 479

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E+IR LRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLR+ TSLIQT GRAAR
Sbjct: 480 RTELIRQLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNFTSLIQTFGRAAR 539

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN  VI+YAD ITKS+  AIDET RR+EKQ+++NK+HNI PQ++ + + E I       
Sbjct: 540 NVNGSVIMYADNITKSMSNAIDETNRRKEKQIQYNKEHNITPQTIIKSVPEQI------- 592

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
                 ++D  +L  S       +  L  QM   ++ L+FE A   RD IKRL+    F+
Sbjct: 593 -----TTLDESKLK-SIHDMTTDIIELESQMKKYSEELDFERAIECRDRIKRLEKEIKFK 646


>gi|150021713|ref|YP_001307067.1| excinuclease ABC subunit B [Thermosipho melanesiensis BI429]
 gi|149794234|gb|ABR31682.1| excinuclease ABC, B subunit [Thermosipho melanesiensis BI429]
          Length = 662

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/660 (50%), Positives = 463/660 (70%), Gaps = 14/660 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ PSGDQP AI +L++G+    KVQ LLGVTGSGKTFTMAK++E + +P +V++
Sbjct: 3   FRVISDFKPSGDQPKAIKKLVEGLKKGYKVQTLLGVTGSGKTFTMAKIVEQINKPTLVIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEFK+FFP N VE+FVSYYDYYQPEAY+P  D YIEK + INE I RMR 
Sbjct: 63  PNKTLAAQLYSEFKSFFPENKVEFFVSYYDYYQPEAYIPTKDLYIEKNADINEIISRMRI 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA +S+L R D IVV+SVS IY  G    +S +  +++IG  ++  E L+ L K  Y+R+
Sbjct: 123 SAIKSILTRKDVIVVASVSAIYNCGDPNDFSNLNYRVEIGQKLKIGEFLTHLAKIGYERK 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    +GTFR+ GD+IEIFPS+ +D   ++ +FG++++EI  F PL    I  ++ + IY
Sbjct: 183 EEIDSKGTFRLKGDTIEIFPSYQDD-GIKIELFGDEVDEIFLFDPLNRSVIERLDKVIIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               ++T    +  A+K IKEEL+ +L+   K+G++LEA+RL+QR   DLE+L   G C 
Sbjct: 242 PTREFITSEEKILRAVKTIKEELEEQLVYFRKKGKILEAERLKQRTLNDLELLTALGYCT 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GR PGEPP +L +Y   D L+F+DESH+TIPQ+  MYRGD+ RK  L EY
Sbjct: 302 GIENYSRHFDGREPGEPPYSLLDYFGNDYLIFIDESHITIPQLRAMYRGDYSRKKNLVEY 361

Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           GFRLP   DNRPLRFEE WN +    I VSATPG +E++  Q  IVEQIIRPTGLVDP V
Sbjct: 362 GFRLPCAFDNRPLRFEEFWNKI-DKVIFVSATPGEFEIKNSQQ-IVEQIIRPTGLVDPEV 419

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + QV+D+  EI    ++  R L+TVLTK+ AE L+EYL E  I+  Y+HSE+ T+
Sbjct: 420 EVRPTKNQVDDLVGEILKVRKRNERALVTVLTKKTAERLSEYLVELGIKALYLHSELDTI 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+E+++ LR G  +V+VG+NLLREGLD+PE  LVAILD+D EGFLRS+T+L+Q IGR A
Sbjct: 480 ERVEVLKKLRRGDIEVVVGVNLLREGLDLPEVSLVAILDSDTEGFLRSETTLVQIIGRVA 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV-----KEKIMEVID 734
           RN N +VI+YAD IT +++ AI+ET RRR+ Q+++N+++NI P+++     +E   + +D
Sbjct: 540 RNQNGRVIMYADRITPAMKRAIEETNRRRKLQMKYNERNNIKPKTIIKPLDEEIFKQFMD 599

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                     +I +  + L++ +     ++  L ++M+ AA  L +E+AAR+RDE+  LK
Sbjct: 600 NENELKEELESIFMLKESLTVEE-----YVAVLEEEMYKAASELRYEDAARLRDELFMLK 654


>gi|78777891|ref|YP_394206.1| excinuclease ABC subunit B [Sulfurimonas denitrificans DSM 1251]
 gi|78498431|gb|ABB44971.1| Excinuclease ABC subunit B [Sulfurimonas denitrificans DSM 1251]
          Length = 660

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/657 (52%), Positives = 447/657 (68%), Gaps = 8/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  L   I    + Q L GVTGSGKT TMA+VIE ++ P I+M 
Sbjct: 7   FKVVSPYQPAGDQPEAIKILSDSILKGNRYQALEGVTGSGKTHTMARVIENVKMPTIIMT 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEF+ FFP+N VEYFVSYYDYYQPEAY+PR D +IEK+S+IN++++R+R 
Sbjct: 67  HNKTLAAQLYSEFRQFFPNNHVEYFVSYYDYYQPEAYIPRQDLFIEKDSAINDELERLRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S+T +LL  +D IVV+SVS  YG+G  E Y  M+  + IGD + QK+LL  LV+  Y R 
Sbjct: 127 SSTANLLSYDDVIVVASVSANYGLGDPEEYENMVQSVAIGDVIAQKKLLLRLVEMGYSRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D     G  RV G+S++IFP + E  A R+  FG++IE I  F  +  +K+   +   IY
Sbjct: 187 DSYFDSGHIRVNGESLDIFPPYFEQEAIRIEFFGDEIEAIYTFDTIDNKKLEEHKQFTIY 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A S +   +  L  A+K I+EEL  RL   +KEG+L+E QRL+QR+ +DLEML+TTG C+
Sbjct: 247 ATSQFSVRQEKLAVAIKRIEEELDDRLAYFKKEGKLVEHQRLKQRVEFDLEMLQTTGMCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENYSR LT +  GE P TL +Y     ++ L+ VDESHV++PQ  GMY GD  RK  L
Sbjct: 307 GIENYSRLLTEKKIGEAPYTLLDYFALHHKEYLVIVDESHVSLPQYRGMYAGDRARKEVL 366

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL  +E+    P  + VSATP  +ELE    +  EQIIRPTGL+DP
Sbjct: 367 VEYGFRLPSALDNRPLMLDEYINKAPHYLFVSATPSKYELE-LSAVKAEQIIRPTGLLDP 425

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EI+ +  QVED++DEI     +  R+L+TVLTK+MAE LT+YL +  IRV YMHS++ 
Sbjct: 426 VIEIKPSTNQVEDIHDEIKKITLKNERVLITVLTKKMAEALTKYLADLGIRVEYMHSDID 485

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T++R +IIR LR G+FDVL+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQTIGR
Sbjct: 486 TIQRNQIIRSLRQGEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTIGR 545

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
            ARN N +VILYA+ IT S+Q AID T  RRE Q +HNK H I P +   K+ E +    
Sbjct: 546 GARNSNGRVILYANKITTSMQKAIDTTNARREIQDKHNKIHGITPTTTIRKLDENLKVEE 605

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             D    N  +D    S    + KA +  L  +M  AA  LNFEEAAR+RDEI ++K
Sbjct: 606 YGDIYQKNKKMDKMPAS----ERKAMVTQLSLKMKEAARELNFEEAARLRDEIAKIK 658


>gi|320528723|ref|ZP_08029875.1| excinuclease ABC subunit B [Solobacterium moorei F0204]
 gi|320130933|gb|EFW23511.1| excinuclease ABC subunit B [Solobacterium moorei F0204]
          Length = 658

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/655 (49%), Positives = 443/655 (67%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA+L+ G+H+ +K Q+L G TG+GKTFTMA +I  M RP +V +
Sbjct: 6   FELVSPFKPTGDQPKAIAELVAGLHAGKKEQVLEGATGTGKTFTMANIIAQMNRPTLVFS 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK  FPHN VE+FVS +DYYQPEAY+P++D YIEK ++INE++D  R 
Sbjct: 66  HNKTLAGQLYSEFKELFPHNRVEFFVSNFDYYQPEAYMPKSDMYIEKTAAINEELDMFRE 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S   SLLER D IVV+SV+CIY       Y  M   +++G+S+++ +L+  L++ QY R 
Sbjct: 126 STLNSLLERRDTIVVASVACIYAASDPVEYKNMFYTIRVGESIDRNDLMRRLIELQYSRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGT RV GD I++ PS+  +   R+ MFG +IE I+E  PLTG+ +   +   I+
Sbjct: 186 DVDQTRGTIRVRGDIIDLTPSYTNEFNIRIEMFGEEIERITEIDPLTGKTMNAYQFYNIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S Y   + T+  A   I+ EL+ RL    K+G+ LEA+RLEQR  +DLE L   G C 
Sbjct: 246 PASGYARSKETMLRACDAIEAELEDRLEYFRKKGKPLEAERLEQRTRFDLEALRENGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR  G+ P  LF+Y P+D LLFVDESHV++PQ+ GMY GD  RK  L EY
Sbjct: 306 GIENYSMHIDGRKVGQRPWNLFDYFPKDFLLFVDESHVSLPQVRGMYNGDRQRKEVLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS ++NRP++F+E+  +    I  SATPG +ELE     + EQIIRPTGL+DP + 
Sbjct: 366 GFRLPSALENRPMKFDEFQTMMNQVIYCSATPGDFELEAVDHHVTEQIIRPTGLLDPKIT 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ + ++   ++  R+L+T LT RMAEDLT YL ER  ++ Y+H E KTLE
Sbjct: 426 VKPTKGQIDDICEALDARLKRNERVLITTLTVRMAEDLTAYLKERGYKIAYLHHETKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E+IRDLRLGK D +VGINLLREGLDIPE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RTEVIRDLRLGKVDAIVGINLLREGLDIPEVSLVCILDADKEGFLRSHRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +V +YAD +T S++ AI+ET RRR+ Q  +N +H I P +VK+ + E I     ++
Sbjct: 546 NANGEVYMYADVMTDSMRYAINETERRRKIQEAYNVEHGIIPTTVKKNVEEAIRGKETKE 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            A   +   A+   LS+K     +  +  +M  AA +LNFE AA +RD +  LKS
Sbjct: 606 MAAKYMQKKAK---LSQKDKAKLIADMEVEMREAAASLNFERAAELRDILFELKS 657


>gi|301308772|ref|ZP_07214724.1| excinuclease ABC subunit B [Bacteroides sp. 20_3]
 gi|300833296|gb|EFK63914.1| excinuclease ABC subunit B [Bacteroides sp. 20_3]
          Length = 673

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/664 (49%), Positives = 459/664 (69%), Gaps = 11/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA L +GI +    Q LLGVTGSGKTFT+A VI+ +QRP ++++
Sbjct: 3   FEISSSFSPTGDQPEAIAALSEGIKNGVPFQTLLGVTGSGKTFTIANVIKEVQRPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYLPSTDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVVSSVSC+YG+    ++++ +  L+ G  +++ +LL   V   Y  
Sbjct: 123 RATASLLSGRKDVIVVSSVSCLYGMADPTAFAEKVTHLERGMRIDRDKLLRRFVDALYVN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
             +    G FRV GD+++IFP+    + +A+R+  + ++I+ IS F PLTG++    + +
Sbjct: 183 NKLEFKSGCFRVNGDTVDIFPAIETFDGMAYRIEFWDDEIDRISSFNPLTGEEYDEQDEL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + +VT +  +NTA+  I  +L  ++  L++ G+  EA+RL +R+T+DLEM+   G
Sbjct: 243 NIYPTNLFVTTQERINTAIGQIDVDLGTQVNFLKEIGKPFEAKRLYERVTFDLEMIRELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR  G+ P  L +Y P+D +L VDESHVTIPQI  MY GD+ RK  L
Sbjct: 303 HCSGIENYSRYFDGRAAGDRPFCLLDYFPKDFMLVVDESHVTIPQIRAMYGGDYARKKNL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS MDNRPL F+E+  L P  I VSATP  +EL + +G++VEQ+IRPTGL+DP
Sbjct: 363 VEYGFRLPSAMDNRPLTFDEFESLTPLGIYVSATPADYELIKSEGVVVEQVIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R +  Q++D+ +EI   + +  R+L+T LTKRMAE+LT Y+    +R  Y+HS+V 
Sbjct: 423 IIDVRPSLNQIDDLMEEITQRSAKDERVLVTTLTKRMAEELTTYMTRMGVRCNYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++I+ DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERVQIMDDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---- 733
           AARNVN KVI YAD IT S+Q  +DET RRREKQ+ +N+ H I P+ V +  + ++    
Sbjct: 543 AARNVNGKVIFYADKITASMQQTMDETNRRREKQMAYNEAHGITPKQVMKNSVSMLAEKQ 602

Query: 734 ---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
              +P    +   + ++    Q  +++ + +  ++  RKQM  AA  L+F EAA+ RDE+
Sbjct: 603 QTAEPYAYIEPEPSLVADPVVQY-MNRTQLEKAIERTRKQMTEAAKKLDFIEAAQFRDEL 661

Query: 791 KRLK 794
            +L+
Sbjct: 662 VKLE 665


>gi|311748765|ref|ZP_07722550.1| excinuclease ABC subunit B [Algoriphagus sp. PR1]
 gi|126577300|gb|EAZ81548.1| excinuclease ABC subunit B [Algoriphagus sp. PR1]
          Length = 679

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/672 (50%), Positives = 477/672 (70%), Gaps = 22/672 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI +L +G+++ EK Q+LLGVTGSGKTFT+A +I+ +Q+P ++++
Sbjct: 3   FKLTSDYQPTGDQPKAIEKLSEGVNNGEKAQVLLGVTGSGKTFTIANLIQQVQKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEA++P + TYIEK+ SIN++I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPENAVEYFISYYDYYQPEAFIPSSGTYIEKDLSINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA+ SLL  R D IVV+SVSCIYGIG+ E + + +++L+ GD + + +LL  LV   Y R
Sbjct: 123 SASSSLLTGRRDVIVVASVSCIYGIGNPEEFGKNVIRLQEGDRIPRNQLLFKLVDILYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
               +  GTFRV GD+++IF ++  D  +R+  +G++IE I    P +G+K+ + + I I
Sbjct: 183 TQQDLTHGTFRVKGDTVDIFVAY-ADWGYRIFFWGDEIEAIQRIDPKSGKKLNDEKIISI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VT + TL TA+  I+ ++  ++   EKEG+ +EA+RL++R  +DLEM+   G C
Sbjct: 242 FPANLFVTGKDTLQTAIHEIQHDMVAQVNFFEKEGKFMEAKRLQERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +ENYSRY   R PG  P  L +Y P+D LL +DESHVT+PQ+  M+ GD  RK  L +
Sbjct: 302 SGVENYSRYFDRREPGARPFCLIDYFPDDFLLVIDESHVTVPQVRAMWGGDRSRKVNLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+  L    + VSATP  +EL   +G +VEQIIRPTGL+DP +
Sbjct: 362 FGFRLPSALDNRPLKFEEFETLANQVVYVSATPADYELNLTEGEVVEQIIRPTGLLDPTI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R ++ Q++D+ +EI+   +   R+L+T LTKRMAE+L +YL    ++ RY+HSEVKTL
Sbjct: 422 DVRPSQNQIDDLLEEIDQTIKTDARVLVTTLTKRMAEELQKYLERAGVKSRYIHSEVKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EI+R+LRLG FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SL+QTIGRAA
Sbjct: 482 DRVEILRELRLGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNERSLVQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIM---EVI 733
           RN   +VI+YAD IT S+++AIDET RRR  Q+ +N++H I P +V   ++KIM   +V 
Sbjct: 542 RNQEGRVIMYADKITPSMKMAIDETKRRRALQIAYNEEHGITPTTVIKSRDKIMGQTKVA 601

Query: 734 D----------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
           D          P+  E+    N++ D     LSK+K +  +   +KQM  AA  LNF EA
Sbjct: 602 DSKRNPKVYAGPMPGEE----NMAADPVVQYLSKEKLEKLIVQTQKQMEKAAKELNFMEA 657

Query: 784 ARIRDEIKRLKS 795
           AR+RDE +  KS
Sbjct: 658 ARLRDEWQSQKS 669


>gi|328948864|ref|YP_004366201.1| UvrABC system protein B [Treponema succinifaciens DSM 2489]
 gi|328449188|gb|AEB14904.1| UvrABC system protein B [Treponema succinifaciens DSM 2489]
          Length = 665

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/655 (48%), Positives = 467/655 (71%), Gaps = 7/655 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP AI +L +G    +K Q L GVTGSGKTFTMAK+IEA+QRP ++++
Sbjct: 4   FHVVSPFEPSGDQPNAIKKLSEGFFRGDKYQTLKGVTGSGKTFTMAKIIEAVQRPTLIIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L+AQLY EFK FFP NAVEYFVSYYDYYQPEAYVP  D YIEK++SIN++ID++R 
Sbjct: 64  HNKTLSAQLYREFKTFFPDNAVEYFVSYYDYYQPEAYVPARDLYIEKDASINKEIDKLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +L+ER D I+V++VSCIYG+G  + Y +M + ++ G+ ++  E+ S L+  QY+R 
Sbjct: 124 AATYALMERRDVIIVATVSCIYGLGMPDLYKEMRIHVEKGNELDTHEIASRLISIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLE-DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           D+ + RG FR+ GD+IEIFP ++E D A+++ +  + I  I  F  ++G+ I  ++ +++
Sbjct: 184 DMILERGKFRIKGDTIEIFPPYMETDEAYKIELDFDQISRIKRFNAISGETIEELDELQL 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y   H+V PR  + +  + I+ EL  RL EL   G++LEA+RL+ R TYDLEM++  G C
Sbjct: 244 YPAKHFVVPRDQMASVTEKIQTELDSRLEELRSAGKILEAERLKTRTTYDLEMMKEMGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS  ++GR  G+PP TL  Y P+D L  +DE+HV++PQI  MY GD  RK  L +
Sbjct: 304 SGIENYSGPISGRKRGDPPATLLHYFPDDFLCMIDEAHVSVPQIGAMYEGDRARKQNLID 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+ +E+       I V+ATP   E+++    +VEQ+IRPTGL+DP +
Sbjct: 364 FGFRLPSALDNRPLKIDEFTKKMNQVIFVTATPRPEEIKKSTQ-VVEQLIRPTGLLDPKI 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D++ E++   ++G R L+  LTK+MAEDLT+YL E N++V+Y+HSE+ T 
Sbjct: 423 EVRPSEGQMQDIFKEVSARIKKGERSLILTLTKKMAEDLTDYLSELNLKVKYIHSEIDTF 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++ LR G+ DVL+GINLLREG+D+PE  L+AILDADK GFLRS TSLIQ IGRAA
Sbjct: 483 ERVEILKSLRTGETDVLIGINLLREGIDLPEVSLIAILDADKIGFLRSTTSLIQIIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN +  V++YAD ++ +++ AIDET RRR  Q  +NK+H I P+++K+ + ++++    +
Sbjct: 543 RNADGTVLMYADRMSDAMKEAIDETKRRRSIQEAYNKEHGIVPKTIKKAVEDILEHQKED 602

Query: 740 DAATTNISIDA----QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                NI ++A      L ++K++ K  L  ++K+M  AAD L++E+AA +RD+I
Sbjct: 603 AEQEANIKLEALKNCTNLFVAKQRKKL-LDLMKKEMSEAADRLDYEQAAVLRDQI 656


>gi|225012707|ref|ZP_03703142.1| excinuclease ABC, B subunit [Flavobacteria bacterium MS024-2A]
 gi|225003240|gb|EEG41215.1| excinuclease ABC, B subunit [Flavobacteria bacterium MS024-2A]
          Length = 662

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/662 (49%), Positives = 460/662 (69%), Gaps = 13/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+GDQP AI +++    +++    L GVTGSGKTFTMA  ++ +QRP +V+A
Sbjct: 3   FKLVSDFKPTGDQPKAIEEIVNQFQNQDSFVTLQGVTGSGKTFTMANAVQQLQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P + TYIEK+ SINE I+++R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPTSGTYIEKDLSINEDIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IVV+SVSC+YGIG+   + + ++ ++    + + +L+  LV+  Y R
Sbjct: 123 STTSSLLSGRRDVIVVASVSCLYGIGNPAEFEKNVITIERDQVISRTQLMHRLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RG FRV GD I++FP +  D+A+++  FG++IE I  F P+   ++   + + I
Sbjct: 183 TTAEFSRGNFRVLGDIIDVFPGY-ADIAFKIHFFGDEIELIEAFDPINNSRLEQYDKVNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    +  A+  I+++L  ++   ++ G+ LEA+RL +R  +DLEM+   G C
Sbjct: 242 YPANIFVTSPDIIQNAILQIQDDLVKQVDYFKEVGKHLEAKRLHERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P D L+ VDESHVTI Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGRAPGTRPFCLLDYFPNDFLMIVDESHVTISQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   + VSATP  +ELE+ +G  VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFESLQNQVLYVSATPADYELEKTEGAFVEQIIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LT+YL    IR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLIEEIQVRVEKDERTLVTTLTKRMAEELTKYLSRAQIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QTIGRAA
Sbjct: 482 ERVEIMQDLRKGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K I+YAD ITKS+Q  IDET  RREKQ  +N K++I P ++ +     +D  L +
Sbjct: 542 RNIEGKAIMYADVITKSMQKTIDETNYRREKQNAYNVKNDITPTALNKS----LDSALAK 597

Query: 740 DAATTNIS-IDAQQLS------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           ++ +T+ + +++++++      L+K + +  ++ LRK M  AA +L+F EAA+ RD+IK 
Sbjct: 598 NSLSTHANELESRKVAEEANRYLTKPQIEKKIRELRKDMEKAAKSLDFIEAAKYRDDIKL 657

Query: 793 LK 794
           L+
Sbjct: 658 LQ 659


>gi|85057679|ref|YP_456595.1| excinuclease ABC subunit B [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|123518201|sp|Q2NJ77|UVRB_AYWBP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|84789784|gb|ABC65516.1| excinuclease ABC subunit B [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 667

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/655 (49%), Positives = 449/655 (68%), Gaps = 4/655 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++Q+   PSGDQP AI +L+       K Q+LLG TG+GKTFT+A +I+ +Q+  +V
Sbjct: 5   NLFKLQSSLKPSGDQPQAIQKLVNNFKQGLKEQILLGATGTGKTFTIANIIQHLQQKTLV 64

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LA QLY+E K  FP+N VEYF+SYYDYYQPEAYV  +DTYIEK+S IN++ID++
Sbjct: 65  IAHNKTLAGQLYNELKAMFPNNRVEYFISYYDYYQPEAYVASSDTYIEKDSKINDEIDQL 124

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSA  SL+ R+D IVV+SVSCIYG+G ++ Y +  + L+IGD  E+K L++ L++ +Y+
Sbjct: 125 RHSAAGSLINRDDVIVVASVSCIYGVGDLKDYQKSTLHLQIGDKYERKNLINKLIELKYQ 184

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +I   RGTFRV GD IEI  S  +++  R+  FGN+IE I  FY L G+ I N++ I 
Sbjct: 185 RNEINFQRGTFRVRGDIIEIIASSSKEIGIRIIFFGNEIENIQNFYVLNGKAIANLKLIT 244

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++  S Y T    L  ++K I++ELK ++   EK  +LL AQ+++ R  +DLEMLE  G+
Sbjct: 245 LFPASLYATNNQKLQESIKRIRQELKEQINHFEKTNQLLAAQKIKMRTLHDLEMLEQIGN 304

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  +ENYSR+L  +  GE P TL ++   D L  VDESHVTIPQI GMY GDF RK  L 
Sbjct: 305 CNGVENYSRHLALKGKGEAPSTLIDFFGNDFLTIVDESHVTIPQIKGMYFGDFSRKNNLV 364

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            +GFRLPS +DNRPL+F E+       I +SATPG +EL + +  IVEQIIRPT ++DP 
Sbjct: 365 NFGFRLPSALDNRPLKFNEFQEKMNKVIYLSATPGDYELTK-KIPIVEQIIRPTFVLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    Q++D+Y EI    +   RIL+T LT  M+EDLT YL    I+V Y+HSE+K+
Sbjct: 424 IEVRPTNNQMDDLYFEIKHQTKNNQRILITTLTINMSEDLTTYLKNLGIKVAYLHSEIKS 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L+R+EI++DLRLGK+D LVG+NLLREGLD+PE  LVAILDADK+GFLR++ SLIQTIGRA
Sbjct: 484 LQRLEILKDLRLGKYDCLVGVNLLREGLDLPEVALVAILDADKQGFLRNERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  K I+YAD I+ ++Q+AI+ET RRR+ Q ++N+   + P ++ + I+E I     
Sbjct: 544 ARNITGKAIMYADCISPAMQIAIEETYRRRKIQKQYNETMKVTPTALNKTILETISIKQK 603

Query: 739 EDAATTNISIDAQ---QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           E           Q   Q++ +       +K L+K M  AA  L+FE+AA +RD I
Sbjct: 604 ERIKNEKGKSKVQKKLQINTNMTAKNKEIKRLQKTMKEAAKALDFEKAATLRDLI 658


>gi|289753720|ref|ZP_06513098.1| excinuclease ABC (subunit B-helicase) uvrB [Mycobacterium
           tuberculosis EAS054]
 gi|289694307|gb|EFD61736.1| excinuclease ABC (subunit B-helicase) uvrB [Mycobacterium
           tuberculosis EAS054]
          Length = 654

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/568 (58%), Positives = 423/568 (74%), Gaps = 1/568 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 7   FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 67  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRR 708
           NV+ +V +YAD IT S++ AIDET RRR
Sbjct: 546 NVSGEVHMYADKITDSMREAIDETERRR 573


>gi|260654700|ref|ZP_05860190.1| excinuclease ABC subunit B [Jonquetella anthropi E3_33 E1]
 gi|260630716|gb|EEX48910.1| excinuclease ABC subunit B [Jonquetella anthropi E3_33 E1]
          Length = 681

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/655 (49%), Positives = 443/655 (67%), Gaps = 10/655 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q  + P+GDQP AI++L +G+   ++ Q LLGVTGSGKTFT+A VI+  QRP +V+A
Sbjct: 6   FRLQAPWPPAGDQPGAISRLTEGLLRGDRCQTLLGVTGSGKTFTVASVIQNFQRPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAV YFVSYYDYYQPEAY+P +D YIEK++SIN+QI+RMR 
Sbjct: 66  HNKTLAAQLYSEFKGFFPDNAVHYFVSYYDYYQPEAYLPGSDVYIEKDASINDQIERMRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T+SL+ER D IVV+SVSCIYG+G  E+Y   +V   +G+  +++  L SL+K  Y+R 
Sbjct: 126 ATTKSLIERRDVIVVASVSCIYGMGKRENYEDAVVSFSVGERWKRRAFLESLMKSYYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ +  G FRV GD +E++P +  D + R S F  ++E I E  P++G+ +   E + ++
Sbjct: 186 DLDLSPGKFRVRGDVVELYPVY-SDKSLRFSFFDEELESIDEVEPISGKTVTRRERVSVF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HYVT    +  AM  I+ EL+ RL     +   LEAQRLE R  YD+EML   G C 
Sbjct: 245 PAQHYVTSDNAVAEAMVKIRAELEERLEFFRSQKSFLEAQRLESRTKYDMEMLAEAGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL GR  GE P TL ++ P D L+ VDESH+T+PQ+ GM+ GD  RK  L E+
Sbjct: 305 GIENYSRYLDGREAGEQPGTLLDFFPPDFLMVVDESHITLPQVRGMFNGDRARKEVLVEH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPL++ E+       I  SATPG WE+++    +VEQ+IRPTG+VDP V 
Sbjct: 365 GFRLPSCLDNRPLKWNEFENFMQRVICCSATPGDWEIQRSSQ-VVEQVIRPTGVVDPEVF 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D+ DEI  A + G R+L+T LTK+MAEDL EY  +  ++ +Y+HSE+   E
Sbjct: 424 VRPASGQVDDLLDEIARATEAGGRVLVTTLTKKMAEDLAEYAGKLGVKAKYIHSELDAFE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R ++IR+LR G  DVLVGINLLREG+D+PE  LVAILDAD+EGFLRS  SLIQ +GRAAR
Sbjct: 484 RADLIRELREGSVDVLVGINLLREGIDMPEVTLVAILDADREGFLRSYRSLIQIMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  S+VILYADT T SI+ A  E++RRR+KQLE NK H I P++V + +  ++       
Sbjct: 544 NTESRVILYADTQTDSIRQACAESSRRRQKQLEFNKAHGIVPRTVSKSVSRLL------- 596

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                     +  +   ++ +    ++ K M  +   L FE+AA +RD +  L++
Sbjct: 597 -PELEFEEAPEAAASKAEEEQMDCATIEKLMWESVKKLQFEKAAMLRDRLAELRN 650


>gi|262384314|ref|ZP_06077449.1| excinuclease ABC, B subunit [Bacteroides sp. 2_1_33B]
 gi|262294017|gb|EEY81950.1| excinuclease ABC, B subunit [Bacteroides sp. 2_1_33B]
          Length = 673

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/664 (49%), Positives = 459/664 (69%), Gaps = 11/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA L +GI S    Q LLGVTGSGKTFT+A VI+ +QRP ++++
Sbjct: 3   FEISSSFSPTGDQPEAIAALSEGIKSGVPFQTLLGVTGSGKTFTIANVIKEVQRPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLPSTDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVVSSVSC+YG+    ++++ +  L+ G  +++ +LL   V   Y  
Sbjct: 123 RATASLLSGRKDVIVVSSVSCLYGMADPTAFAEKVTHLERGMRIDRDKLLRRFVDALYVN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
             +    G FRV GD+++IFP+    + +A+R+  + ++I+ IS F PLTG++    + +
Sbjct: 183 NKLEFKSGCFRVNGDTVDIFPAIETFDGMAYRIEFWDDEIDRISSFNPLTGEEYDEQDEL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + +VT +  +N A+  I  +L  ++  L++ G+  EA+RL +R+T+DLEM+   G
Sbjct: 243 NIYPTNLFVTTQDRINMAIGQIDVDLGTQVNLLKEIGKPFEAKRLYERVTFDLEMIRELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR  G+ P  L +Y P+D +L VDESHVTIPQI  MY GD+ RK  L
Sbjct: 303 HCSGIENYSRYFDGRAAGDRPFCLLDYFPKDFMLVVDESHVTIPQIRAMYGGDYARKKNL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS MDNRPL F+E+  L P  I VSATP  +EL + +G++VEQ+IRPTGL+DP
Sbjct: 363 VEYGFRLPSAMDNRPLTFDEFESLTPLGIYVSATPADYELIKSEGVVVEQVIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R +  Q++D+ +EI   + +  R+L+T LTKRMAE+LT Y+    +R  Y+HS+V 
Sbjct: 423 IIDVRPSLNQIDDLMEEITQRSAKNERVLVTTLTKRMAEELTTYMTRMGVRCNYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++I+ DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERVQIMDDLRNGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---- 733
           AARNVN KVI YAD IT S++  +DET RRREKQ+ +N+ H I P+ V +  + ++    
Sbjct: 543 AARNVNGKVIFYADKITASMRQTMDETNRRREKQMAYNEAHGITPKQVMKNSVSMLAEKQ 602

Query: 734 ---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
              +P    +   + ++    Q  +++ + +  ++  RKQM  AA  L+F EAA+ RDE+
Sbjct: 603 QTAEPYAYIEPEPSLVADPVVQY-MNRTQLEKAIERTRKQMTEAAKKLDFIEAAQFRDEL 661

Query: 791 KRLK 794
            +L+
Sbjct: 662 VKLE 665


>gi|300709532|ref|YP_003735346.1| excinuclease ABC subunit B [Halalkalicoccus jeotgali B3]
 gi|299123215|gb|ADJ13554.1| excinuclease ABC subunit B [Halalkalicoccus jeotgali B3]
          Length = 686

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/664 (51%), Positives = 452/664 (68%), Gaps = 9/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P+GDQP AI QL+ G  S    Q LLGVTGSGKT T++  +E +Q P +V+A
Sbjct: 20  FRVEAPFEPAGDQPEAIEQLVSGYESGMDRQTLLGVTGSGKTNTVSWTVEGIQTPTLVIA 79

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+N FP NAVEYFVSYYDYYQPEAYV  +DTYI+K++SIN++IDR+RH
Sbjct: 80  HNKTLAAQLYEEFRNLFPDNAVEYFVSYYDYYQPEAYVEASDTYIDKDASINDEIDRLRH 139

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL R+D IVV+SVS IYG+G   +Y  M +QL+ G  +++ ELL  LV   Y+R 
Sbjct: 140 SATRSLLTRDDVIVVASVSAIYGLGDPRNYVDMSLQLEQGQRIDRDELLKGLVDLNYERN 199

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   +GTFRV GD++E+FP +    A RV  +G++I+ +S+  PL G        + I+
Sbjct: 200 DVDFTQGTFRVRGDTVEVFPMYGR-YAVRVEFWGDEIDRLSKLDPLEGDLKSEEPAVLIH 258

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HY  P   +  A+  I+E+L+ R+   E+ G +L AQR+E+R T+D+EM+  TG C 
Sbjct: 259 PAEHYSIPEQRMENAISEIEEDLEKRIRYFERNGDMLSAQRIEERTTFDIEMMRETGYCS 318

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS YL+ R  G+ P TL +Y P+D L  +DESH TIPQI G Y GD  RK +L E 
Sbjct: 319 GIENYSVYLSDRESGDAPYTLLDYFPDDFLTVIDESHQTIPQIKGQYAGDKSRKDSLVEN 378

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+  DNRPL FEE+       + VSATPG +E +  +  IVEQI+RPT LVDP V 
Sbjct: 379 GFRLPTAYDNRPLTFEEFEERVGKRLYVSATPGDYERDVSEQ-IVEQIVRPTHLVDPAVS 437

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++SA+ Q++D+   I+    +  R+L+T LTKRMAEDLTEYL    + V YMH E  TLE
Sbjct: 438 VQSAQEQIDDLMARIDERTDRDERVLVTTLTKRMAEDLTEYLENSGVGVEYMHDETDTLE 497

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E+IR LRLG+FDVLVGINLLREGLDIPE  LVAILDAD++GFLRS+T+LIQT+GRAAR
Sbjct: 498 RHELIRGLRLGEFDVLVGINLLREGLDIPEVSLVAILDADQQGFLRSRTTLIQTMGRAAR 557

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +V+LYAD  T ++  AI+ET RRRE Q E N+ H+  P ++ +++ E   P    D
Sbjct: 558 NAEGEVVLYADETTDAMAEAIEETQRRREIQREFNEAHDYTPTTIDKEVSETNLPGSKTD 617

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
             T+ ++ DA +     +  +A ++SL ++M+ AA NL FE AA IRD I+ L+    F 
Sbjct: 618 --TSGVTGDAPE---DTEAAQARVQSLEERMNEAASNLEFELAADIRDRIRELREE--FD 670

Query: 801 GLDD 804
            L D
Sbjct: 671 ALSD 674


>gi|34540208|ref|NP_904687.1| excinuclease ABC subunit B [Porphyromonas gingivalis W83]
 gi|34396520|gb|AAQ65586.1| excinuclease ABC, B subunit [Porphyromonas gingivalis W83]
          Length = 678

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/668 (49%), Positives = 454/668 (67%), Gaps = 14/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + + P+GDQP AI QL++GI+     Q LLGVTGSGKTFT+A V+ A+ RP +V++
Sbjct: 3   YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +IN +I+++R 
Sbjct: 63  HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D +VVSSVSC+YG+ + E++S+ ++ L  G   ++   +  LV+  Y  
Sbjct: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
             +    G FRV GDS++IFP+    + VA+RV  +  ++E +S F P TG++   +  +
Sbjct: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           KIY  + +VT +  ++ A+  I  +L  ++  L++ G+  EA+RL +R+TYDLEM+   G
Sbjct: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR+ GE P  L +Y PED LL +DESHVTIPQI  MY GD  RK  L
Sbjct: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP+ +DNRPLRF+E+  L P T+ +SATP  +EL + +G+IVEQ+IRPTGL+DP
Sbjct: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            ++++    QV+D+ +EI    ++  R+L+T LTKRMAE+L+EYL    I   Y+HS+V 
Sbjct: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+ I+ DLR G +D L+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---D 734
           AAR+++ +VI YAD IT S+QL +DET RRR KQL +N+ H I PQ + +    +    D
Sbjct: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602

Query: 735 PILLEDAATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
              L+    +   I+   +         LSK K +A + S +KQM  AA  L+F EAAR+
Sbjct: 603 VSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662

Query: 787 RDEIKRLK 794
           RDE  RL+
Sbjct: 663 RDEAARLE 670


>gi|257456400|ref|ZP_05621596.1| excinuclease ABC subunit B [Treponema vincentii ATCC 35580]
 gi|257446060|gb|EEV21107.1| excinuclease ABC subunit B [Treponema vincentii ATCC 35580]
          Length = 663

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/657 (50%), Positives = 448/657 (68%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++  DY P+GDQ  AI QL  GI + ++ Q L GVTGSGKTFTMA +I+A+Q+P ++++
Sbjct: 4   FKLMADYQPAGDQGDAIRQLADGILAGDRFQTLKGVTGSGKTFTMANIIQAVQKPTLIIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP  D YIEK++SIN++IDR+R 
Sbjct: 64  HNKTLAAQLYREFKGFFPENAVEYFVSYYDYYQPEAYVPARDLYIEKDASINDEIDRLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ER D IVVS+VSCIYG+G  ES+  + + ++ G +V+  +L   L+  QY+R 
Sbjct: 124 SATFSLMERRDVIVVSTVSCIYGLGLPESWRDLRITIEKGQTVDPGKLKKQLISLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RG FRV GD +E+FP+++E+ A+R+     +I  I  F PLTG+  +  E + IY
Sbjct: 184 DAVLERGRFRVKGDVMEVFPAYMEE-AYRIEFDWEEIVRIRRFNPLTGEVSQEYEELSIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V P   +  A++ IK EL  RL  L+ +G+L EA+RL+ R  YD+EML   G C 
Sbjct: 243 PAKHFVMPENAIPNAIERIKRELDARLEVLKAQGKLFEAERLKTRTEYDIEMLSEMGYCP 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  +  R PGEPP TLF Y P+D LLF+DESHVT PQI  MY GD  RK  L ++
Sbjct: 303 GIENYSAPIANRKPGEPPATLFHYFPKDFLLFMDESHVTFPQIGAMYEGDRSRKQNLVDF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP  +DNRPL+  E+  +    I VSATPG  EL Q    +VEQ+IRPTGL+DP +E
Sbjct: 363 GFRLPCALDNRPLKINEFEAMLNQAIFVSATPGPKEL-QYSTRVVEQLIRPTGLLDPLIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I  +  Q+E +Y E+     +  R L+  LTK+MAEDLT+YL    ++V+Y+HSEV+T+E
Sbjct: 422 IHPSEGQMEHIYGEVKKRIAKDERSLILTLTKKMAEDLTDYLTGLGLKVKYIHSEVETIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI++ LR G+FDVL+GINLLREG+D+PE   + ILDADK GFLRS TSL+Q +GRAAR
Sbjct: 482 RVEILKGLRAGEFDVLIGINLLREGIDLPEVSFIGILDADKIGFLRSTTSLVQIVGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--DPILL 738
           N N  V++YAD I+ +++  I+ETTRRR  Q  +N  H I P ++K+ I +++  +  + 
Sbjct: 542 NANGSVVMYADRISDAMKETIEETTRRRSIQQAYNDAHGITPTTIKKSIEDILVREAEIK 601

Query: 739 EDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +DAA           + L+    K  +K L  QM   AD L FEEAA IRD+I+ +K
Sbjct: 602 KDAARAETEPLVNSFNILNPADRKKLIKKLEAQMAEYADMLLFEEAAVIRDKIEEIK 658


>gi|284166957|ref|YP_003405236.1| excinuclease ABC subunit B [Haloterrigena turkmenica DSM 5511]
 gi|284016612|gb|ADB62563.1| excinuclease ABC, B subunit [Haloterrigena turkmenica DSM 5511]
          Length = 687

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/664 (50%), Positives = 456/664 (68%), Gaps = 7/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   + P+GDQP AI QL +G       Q LLGVTGSGKT T++ +IE +Q+P +V+A
Sbjct: 21  FTVDAPFEPAGDQPEAIEQLAEGFRQGMDKQTLLGVTGSGKTNTVSWLIEEIQKPTLVIA 80

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+N FP NAVEYFVSYYDYYQPEAYV +TDTYI+K++SIN++IDR+RH
Sbjct: 81  HNKTLAAQLYEEFRNLFPENAVEYFVSYYDYYQPEAYVEQTDTYIDKDASINDEIDRLRH 140

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL R D IVV+SVS IYG+G   +Y  M ++L++G+ V + ELL  LV   Y+R 
Sbjct: 141 SATRSLLTREDVIVVASVSAIYGLGDPRNYVDMSMRLEVGEEVGRDELLKRLVDLNYERN 200

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   +GTFRV GD++EI+P +    A RV ++G++I+ + +  PL G+   + + + ++
Sbjct: 201 DVDFTQGTFRVRGDTVEIYPMYGR-YAVRVELWGDEIDRMVKVDPLEGKTQGDQQAVLVH 259

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HY  P  TL  AM  I+ +L  R+   E++G ++ AQR+E+R ++DLEM++ TG C 
Sbjct: 260 PAEHYSIPETTLEEAMDEIRTDLDKRISYFERQGDMIAAQRIEERTSFDLEMMQETGYCS 319

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS YL+ R  G+ P TL +Y P+D L  VDESHVT+PQ+ G Y GD  RK +L E 
Sbjct: 320 GIENYSVYLSDRESGDAPYTLLDYFPDDFLTVVDESHVTLPQVRGQYAGDKSRKDSLVEN 379

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+  DNRPL FEE+      T+ VSATPG +E E+    IVEQI+RPT LVDP +E
Sbjct: 380 GFRLPTAYDNRPLTFEEFQEKTNQTLYVSATPGDYEREESDQ-IVEQIVRPTHLVDPEIE 438

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +  A  Q++D+ D I+    +  R L+T LTKRMAEDLTEYL E  + V YMH E  TLE
Sbjct: 439 VSPASGQIDDLMDRIDERIARDERTLVTTLTKRMAEDLTEYLEEAGVDVAYMHDETDTLE 498

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR LRLG+ DVLVGINLLREGLDIPE  LVAILDAD+EGFLRS+T+L+QT+GRAAR
Sbjct: 499 RHEIIRSLRLGEIDVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTLVQTMGRAAR 558

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +V+LYAD  + +++ AI+ET RRR  Q E+N++H + P ++++++ E   P     
Sbjct: 559 NVNGEVVLYADDPSNAMESAIEETQRRRRIQQEYNEEHGLEPTTIEKEVGETNLP----- 613

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
            + T  +  + +    +++ + ++  L  +M  AA NL FE AA IRD I+ ++      
Sbjct: 614 GSKTETTQVSGREIEDEEEAERYIAELEDRMDEAASNLEFELAADIRDRIREVREEFDLA 673

Query: 801 GLDD 804
           G +D
Sbjct: 674 GGED 677


>gi|188995449|ref|YP_001929701.1| excinuclease ABC subunit B [Porphyromonas gingivalis ATCC 33277]
 gi|188595129|dbj|BAG34104.1| excinuclease ABC B subunit [Porphyromonas gingivalis ATCC 33277]
          Length = 678

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/668 (49%), Positives = 453/668 (67%), Gaps = 14/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + + P+GDQP AI QL++GI+     Q LLGVTGSGKTFT+A V+ A+ RP +V++
Sbjct: 3   YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +IN +I+++R 
Sbjct: 63  HNKTLAAQLYGEFKAFFPKNAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D +VVSSVSC+YG+ + E++S+ ++ L  G   ++   +  LV+  Y  
Sbjct: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
             +    G FRV GDS++IFP+    + VA+RV  +  ++E +S F P TG++   +  +
Sbjct: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           KIY  + +VT +  ++ A+  I  +L  ++  L++ G+  EA+RL +R+TYDLEM+   G
Sbjct: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR+ GE P  L +Y PED LL +DESHVTIPQI  MY GD  RK  L
Sbjct: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP+ +DNRPLRF+E+  L P T+ +SATP  +EL + +G+IVEQ+IRPTGL+DP
Sbjct: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            ++++    QV+D+ +EI    ++  R+L+T LTKRMAE+L+EYL    I   Y+HS+V 
Sbjct: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+ I+ DLR G +D L+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---D 734
           AAR+++ +VI YAD IT S+QL +DE  RRR KQL +N+ H I PQ + +    +    D
Sbjct: 543 AARHIHGRVIFYADKITDSMQLTMDEAARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602

Query: 735 PILLEDAATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
              L+    +   I+   +         LSK K +A + S +KQM  AA  L+F EAAR+
Sbjct: 603 VSALQSGTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662

Query: 787 RDEIKRLK 794
           RDE  RL+
Sbjct: 663 RDEAARLE 670


>gi|149370618|ref|ZP_01890307.1| excinuclease ABC subunit B [unidentified eubacterium SCB49]
 gi|149356169|gb|EDM44726.1| excinuclease ABC subunit B [unidentified eubacterium SCB49]
          Length = 666

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/662 (51%), Positives = 461/662 (69%), Gaps = 16/662 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +++ P+GDQP AI  L+ GI S EK Q LLGVTGSGKTFT+A VIE +Q+P +V+A
Sbjct: 3   FNLVSEFSPTGDQPEAIKALVTGIESEEKYQTLLGVTGSGKTFTVANVIEKVQKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFKN FP NAVEY+VSYYDYYQPEA++P + TYIEK+ SINE+I+ MR 
Sbjct: 63  HNKTLAAQLYTEFKNLFPENAVEYYVSYYDYYQPEAFIPTSGTYIEKDLSINEEIEVMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IVV+SVSCIYGIG+   + + ++ L+ G  + + +LL  LV   Y R
Sbjct: 123 STTSSLLSGRRDVIVVASVSCIYGIGNPAEFQKSVISLEAGQIISRTKLLHQLVHSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +     G FR+ GD++++FPS+  D A+R+  FG++IEEI  F P   + I   + + I
Sbjct: 183 TEAEFSHGRFRIKGDTLDVFPSY-ADHAFRIHFFGDEIEEIEAFNPENNEVIEKYDRLTI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+++L  ++   ++ G+ LEA+RLE+R T+DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLKEAIWEIQQDLVKQVDYFKEIGKHLEAKRLEERTTFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL  R PG  P  L +Y P D L+ VDESHV+IPQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDKRLPGTRPFCLLDYFPSDYLMVVDESHVSIPQVGAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+ EE+  L+   I VSATP  +ELE+  G+ VEQIIRPTGL+DPP+
Sbjct: 362 YGFRLPAAMDNRPLKAEEFESLQNQVIFVSATPADYELEKTGGVFVEQIIRPTGLLDPPI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR +  Q++D+ +EI +  ++  R+L+T LTKRMAE+LT+YL   N+R RY+HS+V TL
Sbjct: 422 EIRPSLNQIDDLLEEIQIRVEKDERVLVTTLTKRMAEELTKYLMRVNVRTRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRRGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N K I+YAD ITKS+QL ID T  +REKQ+ +N K+NI P  +K+          L 
Sbjct: 542 RNINGKAIMYADKITKSMQLTIDATNYKREKQIAYNTKNNITPTQIKKSFDNA-----LS 596

Query: 740 DAATTNISID-AQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           ++     +I+ AQ L+        L+K + + +++  RK M  AA  L+F  AA++RD+I
Sbjct: 597 NSKKNAYTIETAQSLAAESEENEYLTKPQIEKNIRDTRKAMEKAAKELDFMMAAKLRDKI 656

Query: 791 KR 792
           K+
Sbjct: 657 KK 658


>gi|224438015|ref|ZP_03658954.1| excinuclease ABC subunit B [Helicobacter cinaedi CCUG 18818]
 gi|313144461|ref|ZP_07806654.1| UvrABC system protein B [Helicobacter cinaedi CCUG 18818]
 gi|313129492|gb|EFR47109.1| UvrABC system protein B [Helicobacter cinaedi CCUG 18818]
          Length = 658

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/666 (50%), Positives = 447/666 (67%), Gaps = 25/666 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y P+GDQP AI ++   I +  K   L+GVTGSGKT+TMA +I  +  P ++M 
Sbjct: 4   FILESQYAPAGDQPQAITKITDSILNGAKYSTLVGVTGSGKTYTMANIIAKLNLPTLIMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSINE ++R+R 
Sbjct: 64  HNKTLAAQLYSEFKGFFPKNKVEYFISHFDYYQPEAYIPRRDLFIEKDSSINEDLERLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL  +D IVV+SVS  YG+G+ + Y  MI +L++G S  QK LL  LV   Y R 
Sbjct: 124 SATTSLLAYDDVIVVASVSANYGLGNPQEYLTMIEKLEVGQSYTQKALLLKLVNMGYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV G+ ++IFP++ E+   R+  FG++IE I  F  L  Q +  +++  +Y
Sbjct: 184 DSIFERGNFRVNGEVVDIFPAYNENEFIRIEFFGDEIERIGAFDALERQNLAWLKSFVLY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A + ++     L  A++ I+ EL+MRL E E E + +E QRL+ R  +DLEM+  +G C+
Sbjct: 244 AANQFIVSEKRLQLALQNIESELEMRLQEFELENKQIEYQRLKGRTEFDLEMIRESGICK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDS---LLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENY+R+LTG+ PGE P +L +Y  +     L+ VDESHV++PQ  GMY GD  RK  L
Sbjct: 304 GIENYARHLTGKAPGETPYSLLDYFEQKGKPYLIIVDESHVSLPQFGGMYAGDRSRKEVL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPLRF+E+    P  + VSATP   ELE  Q  I EQIIRPTGL+DP
Sbjct: 364 VEYGFRLPSALDNRPLRFDEFINKAPHFLFVSATPAKLELELSQSHIAEQIIRPTGLLDP 423

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
             E+R +  QV D+YDEI L  +   R+L+T LTK+MAE+L++Y  E  I+VRYMHS++ 
Sbjct: 424 LYEVRDSDNQVLDLYDEIKLRVENNERVLITTLTKKMAEELSKYYGELGIKVRYMHSDID 483

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER  +IR LRLG+F+VL+GINLLREGLD+PE  L+AI+DADKEGFLRS+TSLIQT+GR
Sbjct: 484 AIERNHLIRSLRLGEFNVLIGINLLREGLDLPEVSLIAIMDADKEGFLRSETSLIQTMGR 543

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN KVILYA  IT S+Q A D T  RR KQ   NK+HNI P+SV+  +        
Sbjct: 544 AARNVNGKVILYAKKITGSMQRAFDITDYRRAKQEAFNKEHNITPKSVQRGL-------- 595

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAH---------LKSLRKQMHLAADNLNFEEAARIRD 788
                 + + I++  LS   +KG            +K L  +M  AA  L FEEAARIRD
Sbjct: 596 -----ESELKIESSGLSRLYEKGNKKIPKSERDSIIKDLTLKMQQAAKALEFEEAARIRD 650

Query: 789 EIKRLK 794
           EI +++
Sbjct: 651 EIAKIR 656


>gi|255321517|ref|ZP_05362675.1| excinuclease ABC, B subunit [Campylobacter showae RM3277]
 gi|255301373|gb|EET80632.1| excinuclease ABC, B subunit [Campylobacter showae RM3277]
          Length = 658

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/657 (50%), Positives = 459/657 (69%), Gaps = 7/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PS DQ  A+A ++  + S  K Q LLGVTGSGKTFTMA VI+ +  P ++M 
Sbjct: 4   FEISSKFSPSEDQARAVANIVASVRSGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SS+NE+++R+R 
Sbjct: 64  HNKSLAAQLYSEFKGFFPKNHVEYFISYYDYYQPEAYIPRQDLFIEKDSSVNEELERLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL  +D + V+SVS  YG+G+   Y  M+  L +G+++ Q+ LL  LV   YKR 
Sbjct: 124 SATASLLSFDDVVCVASVSANYGLGNPSEYQGMVAYLGVGENINQRALLQKLVDMGYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD ++++P++  D A R+  FG++I+ +  F  L  +K+++V    +Y
Sbjct: 184 DNYFDRGDFRVNGDVVDVYPAYWGDEALRIEFFGDEIDAMYHFDVLENKKLKDVGKFTLY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A S ++     L  A+K I+EEL+ RL E  ++G+L+EAQRL+QR+ +DLEM+ +TG C+
Sbjct: 244 ATSQFIVGADRLKIAIKQIEEELEERLKEFNEQGKLVEAQRLKQRVEFDLEMMSSTGMCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENY+R+LTG+ PGE P ++F+Y     +D L+ VDESHV++PQ  GMY GD  RK  L
Sbjct: 304 GIENYARHLTGQKPGETPYSMFDYFELGGKDYLVIVDESHVSLPQFRGMYAGDRSRKEVL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL+F+E+   R   + VSATP  +E+    G + EQI+RPTGL+DP
Sbjct: 364 VEYGFRLPSALDNRPLKFDEFINKRAKFLFVSATPNEYEINLSCGHVYEQILRPTGLLDP 423

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EI+ +  QVE ++DE     ++  R+L+TVLTK+MAE+L+ Y  E  I+V+YMHS++ 
Sbjct: 424 LIEIKDSENQVEILFDEAKKTIERNERVLVTVLTKKMAEELSRYYTELGIKVKYMHSDID 483

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER EIIR LR G+FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GR
Sbjct: 484 AVERNEIIRGLRSGEFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGR 543

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN +V+++A  ITKS+Q A+D T  RR+ Q E+N+ H I P+S    I E +    
Sbjct: 544 AARNVNGRVLMFAKKITKSMQEAMDTTLARRKMQEEYNRAHGITPRSASRNIEESLH--- 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +ED  T  +   A    +   +  + +K LRKQM  AA+ L FE+AA +RDEI +++
Sbjct: 601 VED-GTEILRKGANLEKMPASERASIIKELRKQMLEAAEQLEFEKAAALRDEIAKIR 656


>gi|154148242|ref|YP_001407219.1| excinuclease ABC subunit B [Campylobacter hominis ATCC BAA-381]
 gi|189037954|sp|A7I3X8|UVRB_CAMHC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|153804251|gb|ABS51258.1| excinuclease ABC, B subunit [Campylobacter hominis ATCC BAA-381]
          Length = 657

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/657 (49%), Positives = 454/657 (69%), Gaps = 8/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PS DQ  AI  +   I +  K Q LLGVTGSGKTFTMA +I+ +Q PA++M 
Sbjct: 4   FEIVSKFSPSKDQQNAIENITASIKNGNKYQTLLGVTGSGKTFTMANIIKNLQMPALIMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP N +EYF+SYYDYYQPEAY+PR D +IEK+SSIN++++R+R 
Sbjct: 64  HNKSLAAQLYSEFKGFFPKNHIEYFISYYDYYQPEAYIPRQDLFIEKDSSINDELERLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL  +D + ++SVS  YG+G+   Y  M++ L+I      K LL  LV   Y R 
Sbjct: 124 SATASLLSFDDVVTIASVSANYGLGNPAEYQGMVLFLEINKKFSLKFLLRKLVDMGYSRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD I+I+P++  D A R+  FG++++++  F  +  +K +N++   +Y
Sbjct: 184 DTYFDRGDFRVNGDIIDIYPAYFNDEAIRLEFFGDELDDMYHFDVIENKKTQNLKKFILY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S ++     L  A+K I+ EL  RL      G+L+EAQRL+QR+ +DLEMLE+TG C+
Sbjct: 244 PTSQFIVGENRLKEAIKGIENELGERLEFFNDNGKLVEAQRLKQRVDFDLEMLESTGMCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENY+RYLTG+N GE P +LF+Y      D L+ +DESHV++PQ  GMY GD  RK TL
Sbjct: 304 GIENYARYLTGQNAGETPYSLFDYYEIKGMDYLVIIDESHVSLPQFRGMYAGDRSRKETL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL F+E+   R   + VSATP  +ELE  +  +  QI+RPTGL+DP
Sbjct: 364 VEYGFRLPSALDNRPLMFDEFINKRAKFLFVSATPNDYELELSKDHVYYQILRPTGLLDP 423

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++ +  QVE +YD          R+L+TVLTK+MAE+L++Y  E  ++V+YMHS++ 
Sbjct: 424 EIVLKDSDNQVEILYDMAKEVIADNERVLVTVLTKKMAEELSKYYLELGLKVKYMHSDID 483

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER E+IR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS+TSLIQT+GR
Sbjct: 484 AIERNELIRGLRTGDFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSRTSLIQTMGR 543

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN KV+++   IT S++ AI+ T +RR+ Q E+NK HNI P+SV   + E +    
Sbjct: 544 AARNVNGKVVMFCKKITNSMKEAIEITQKRRKYQDEYNKTHNITPKSVSRNVEESLK--- 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           L+D    + ++ A+++  S ++ K  +K LRKQM  AAD L FE+AA +RDEIK+++
Sbjct: 601 LDDTEAIDRAMKAEKMP-SSERAKI-VKDLRKQMMEAADKLEFEKAAALRDEIKKMR 655


>gi|223557935|gb|ACM90942.1| UvrABC [uncultured bacterium URE12]
          Length = 697

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/657 (51%), Positives = 452/657 (68%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + P+GDQP AI  L  GI + +  Q+LLGVTGSGKTFTMA VIE +Q+PA+V++
Sbjct: 4   FHLVSPFRPAGDQPRAIDALCAGIEAGKADQVLLGVTGSGKTFTMASVIERLQKPALVLS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK+LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK++++N+ ID++R 
Sbjct: 64  PNKVLAAQLYSEFKTFFPENAVEYFVSYYDYYQPEAYIPSTDTYIEKDAAVNDHIDKLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT S+L R D IVV+SVSCIY IGS ++++ M + ++    V +KEL  +LVK +Y+R 
Sbjct: 124 KATTSILTRRDTIVVASVSCIYNIGSPDNFNNMCLHIQKEMPVSRKELTETLVKMRYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   R  FRV G +I+IFP+  E +A R+ +F   IE I E  PLTG   + +  + I+
Sbjct: 184 DIEFNRKNFRVRGGNIDIFPADSE-LAIRL-IFDETIERICEIDPLTGDVKKEMNDVWIF 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    + +A   I+ EL+ R+      G+ LEA+R+EQR  YDLEM+  TG C+
Sbjct: 242 PATHFITSAEEMESAAVRIEAELEERIKWFRAHGKPLEAERIEQRTRYDLEMIRQTGYCR 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYI-PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
            +ENYSRYL GR  G  P +LF Y   +D LLF+DESHV +PQI GMY GD  RK  L +
Sbjct: 302 GVENYSRYLAGREAGSMPDSLFGYYRNQDFLLFIDESHVALPQIRGMYEGDRARKQCLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPP 558
           +GFRLPS +DNRPL+F+E+  LRP T+ VSATPG  EL +C +  IVEQIIRPTGL DP 
Sbjct: 362 FGFRLPSALDNRPLKFDEFESLRPATVYVSATPGPIELSRCPEDSIVEQIIRPTGLTDPE 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V+I     Q++ +  EI   A++  R L+  LTK+ AEDL+ YL E+ +R RYMHS++ T
Sbjct: 422 VKILPVTGQIQALQKEIAERAEKKERCLVLTLTKKTAEDLSSYLEEKGLRARYMHSDMDT 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER++I+   R G+FD LVGINLLREGLDIPE  LVAIL+AD EGFLRS+T+LIQ  GRA
Sbjct: 482 LERLDILAAFRRGEFDALVGINLLREGLDIPEVSLVAILNADNEGFLRSETTLIQIAGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV  +VIL+AD  T SI  A+ E  RRR  Q+E+N+ H I P+S+ + I++  +    
Sbjct: 542 ARNVGGEVILFADRETGSIGRAVAEMNRRRNIQVEYNRTHGITPKSIVKDIVDYDELHRP 601

Query: 739 EDAATTNI-SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +++AT  +  +      +SK         + + M  AA+NLNFE AA +RD +  LK
Sbjct: 602 DNSATATVREVLPDYGKMSKSALSQLADDMERMMREAAENLNFERAAELRDRLAELK 658


>gi|149198552|ref|ZP_01875596.1| excinuclease ABC subunit B [Lentisphaera araneosa HTCC2155]
 gi|149138267|gb|EDM26676.1| excinuclease ABC subunit B [Lentisphaera araneosa HTCC2155]
          Length = 672

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/664 (48%), Positives = 464/664 (69%), Gaps = 14/664 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +Q+++D+ P+GDQP AI +LL G+ S ++ Q LLGVTGSGKTFT+A ++E   RP +++A
Sbjct: 17  YQLKSDFEPAGDQPEAIKKLLSGLESSQQFQTLLGVTGSGKTFTVANIVEQAGRPVLILA 76

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+SEFK+FFP N VEYFVSY+DYYQPEAY+P+TDTYI K+SS+N++I++ R 
Sbjct: 77  QNKTLAAQLFSEFKHFFPKNRVEYFVSYFDYYQPEAYIPQTDTYIAKDSSVNDEIEKFRL 136

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLER D IV++SVSCIYG+G  E  ++M V+L +GD +++ EL+  L++ +Y+R 
Sbjct: 137 SATCSLLERRDVIVIASVSCIYGLGDPEMLTRMSVKLAVGDEMDRDELIHLLIESRYERN 196

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG F V GD + IFPS+ +D   R+  FG++I+EIS    L    +  +    I+
Sbjct: 197 DTAPSRGEFSVSGDVVNIFPSYKDDY-IRIEFFGDEIDEISLRDELNHNVLEGMSHTLIF 255

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T +  L   +  + EEL  ++ + E EG+L+EAQR+ QR  YD+EM+   G CQ
Sbjct: 256 PASHFATSKDRLEKMVPQVLEELDDQVSKFENEGKLVEAQRIYQRTNYDMEMVAELGYCQ 315

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+TGR  G  P TL ++ P+D L  VDESHVTIPQ   MY GD  RK++L E+
Sbjct: 316 GIENYSRYVTGRPIGSRPFTLIDFFPDDYLTIVDESHVTIPQFRAMYNGDKSRKSSLVEH 375

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+      T+ VSATP ++E+++    +VE ++RPTGLVDP VE
Sbjct: 376 GFRLPSALDNRPMKFEEFEAKMGQTVFVSATPANYEIDKSSD-VVELVVRPTGLVDPVVE 434

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + QV+D+  EI   +++  R+++T LTK+ +EDL++YL +  ++  Y+HS + T+E
Sbjct: 435 IRPLKGQVDDLLAEIRDRSKKNERVIVTCLTKKTSEDLSDYLQDLGVKCTYIHSGIDTIE 494

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+R+LR G+ DV++GINLLREG+D+PE  LVA+LDADKEGFLRS T+L+Q  GRAAR
Sbjct: 495 RIEILRELRSGEIDVVIGINLLREGMDLPEVSLVAVLDADKEGFLRSTTALLQIAGRAAR 554

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------D 734
           N N   ILYADT+T S++  +DET +RREKQ+++N++H I PQ++  K  E +       
Sbjct: 555 NANGSCILYADTMTGSMRRFLDETGKRREKQMQYNEEHGITPQTIIRKEQESLFSGGSSV 614

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           P   ++   + + +  + +S      +  L+ L+ +M  AA+ L FE AA +RD+IK LK
Sbjct: 615 PGKRKNKKESILELREEDIS------EELLRDLKNEMIKAAEALEFERAAELRDKIKELK 668

Query: 795 SSPY 798
              Y
Sbjct: 669 EKLY 672


>gi|222824185|ref|YP_002575759.1| excinuclease ABC, subunit B [Campylobacter lari RM2100]
 gi|222539407|gb|ACM64508.1| excinuclease ABC, subunit B [Campylobacter lari RM2100]
          Length = 657

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/662 (50%), Positives = 451/662 (68%), Gaps = 14/662 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ PS DQ  AI  ++K I +  K Q LLGVTGSGKTFTMA +I+ +  P ++M+
Sbjct: 2   FELTSDFKPSPDQKQAIDGIVKSIQAGNKYQTLLGVTGSGKTFTMANIIKNLNMPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FF +N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R 
Sbjct: 62  HNKSLCAQLYSEFKGFFANNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA+ SLL  +D I ++SVS  YG+G+   Y  M++ L++   + QKELL  LV   YKR 
Sbjct: 122 SASASLLSYDDVICIASVSANYGLGNPSEYVGMVLILELNMQISQKELLKKLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD ++I+P++ ED A R+  FG+++E +  +  L  +K +++    +Y
Sbjct: 182 DNFFDRADFRVNGDIVDIYPAYYEDEAIRLEFFGDELEAMYHYNVLENKKGKDLNKFILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S +      L  A++ IK EL  RL   E E +L+EAQRL+QR+ +DLEML++TG C+
Sbjct: 242 PTSQFSVGETRLKKAIEGIKAELNERLAYFENENKLVEAQRLKQRVEFDLEMLQSTGMCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+ +LTG   G+ P TLF+Y     +D L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 302 GVENYALHLTGLKSGDTPYTLFDYFAIKNQDFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +YGFRLPS +DNRPL F+E+   NC     + VSATP   ELE  +  I  QI+RPTGL
Sbjct: 362 VDYGFRLPSALDNRPLMFDEFINKNC---KFLFVSATPAPLELELSKENIFYQIMRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +EI+ +  QVE +YDE     ++  R+L+TVLTK+MAE+L++Y  E  ++V+YMHS
Sbjct: 419 LDPKIEIKDSENQVEILYDEAKKVIERNERVLITVLTKKMAEELSKYYLELGLKVKYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER EIIR LR G FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS T+LIQT
Sbjct: 479 EIDAIERNEIIRGLRSGAFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSTTALIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KV+L+A  +TKS+Q AID T  RR  Q  +NKKHNI P SVK  I E   
Sbjct: 539 MGRAARNVNGKVLLFAKKVTKSMQEAIDTTNERRTLQEAYNKKHNITPTSVKRNIEES-- 596

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             L  +     I    ++L     K +A + K LRKQM  AA NL FE+AA +RDEI +L
Sbjct: 597 --LKHELEQGEIYRKGKELEKMPAKERAKIVKELRKQMLEAAKNLEFEKAAMLRDEINKL 654

Query: 794 KS 795
           ++
Sbjct: 655 RT 656


>gi|298346802|ref|YP_003719489.1| excision endonuclease subunit B [Mobiluncus curtisii ATCC 43063]
 gi|304389493|ref|ZP_07371456.1| excision endonuclease subunit UvrB [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315656739|ref|ZP_07909626.1| excision endonuclease subunit UvrB [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236863|gb|ADI67995.1| excision endonuclease subunit B [Mobiluncus curtisii ATCC 43063]
 gi|304327303|gb|EFL94538.1| excision endonuclease subunit UvrB [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315492694|gb|EFU82298.1| excision endonuclease subunit UvrB [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 723

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/697 (50%), Positives = 470/697 (67%), Gaps = 45/697 (6%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ ++Y PSGDQP AIA+L + I+S EK  +LLG TG+GKT T A +IE +QRP +V+ 
Sbjct: 18  LEVVSEYTPSGDQPEAIAELAERINSGEKDVVLLGATGTGKTATTAWLIEKLQRPTLVLE 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAYVP+TDTYIEK+S+IN++++R+RH
Sbjct: 78  PNKTLAAQLTAEFRELLPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSAINDEVERLRH 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ E Y    + L  G  +E+++L+   V+ QY R 
Sbjct: 138 SATNSLLTRRDVVVVSSVSCIYGLGTPEEYVSRGIHLTRGMQIERQDLIKRFVQMQYNRN 197

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD+I+I P + E++  RV MFG++I+ ++  +P+TG  +  V  I ++
Sbjct: 198 DVEFTRGNFRVRGDTIDIIPMY-EELGVRVEMFGDEIDALALLHPVTGATLHEVNEIYVF 256

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I+ EL+ R      +G+LLE QRL  R TYDLEML   G C 
Sbjct: 257 PASHYVAGPERMERALAGIESELEERCKWFHDQGKLLEEQRLRMRTTYDLEMLRQIGMCA 316

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR PGEPP TL +Y PED LL +DESHVT+PQI GM+ GD  RK TL ++
Sbjct: 317 GIENYSLHIDGRQPGEPPHTLLDYFPEDFLLVIDESHVTVPQIGGMFEGDMSRKRTLVDF 376

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++EE+      T+ +SATPG +EL    G +VEQIIRPTGLVDP + 
Sbjct: 377 GFRLPSAMDNRPLKWEEFQDRIGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLVDPKIV 435

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ ++I L  +   R+L+T LTKRMAEDLT YL +R IRV Y+HS+V TL 
Sbjct: 436 VKPVEGQIDDLMEQIRLRTEADERVLVTTLTKRMAEDLTTYLAQRGIRVEYLHSDVDTLR 495

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LR G+FDVLVGINLLREGLD+PE  LV+ILDADK+GFLRS  SLIQTIGRAAR
Sbjct: 496 RVELLRSLRQGEFDVLVGINLLREGLDLPEVSLVSILDADKQGFLRSTKSLIQTIGRAAR 555

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD ++ +++ AIDET RRR KQ+ +N+ H I+PQ +++KI +V D +  ED
Sbjct: 556 NVHGEVHMYADAVSDAMREAIDETERRRHKQIAYNEAHGIDPQPLRKKISDVTDMLARED 615

Query: 741 AATTNI-------------------------------SIDAQQLSLSK---KKGKAH--- 763
             T  +                                I+  +++ ++    +  AH   
Sbjct: 616 IDTAELLGTGYRQPDQKPSAAARSAAQDAAAARAALEVINRARVNATEDQPSQAGAHENT 675

Query: 764 ------LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 +  L  QMH AA  L FE AAR+RDEI  LK
Sbjct: 676 VDLPSLVAELTDQMHTAASELRFELAARLRDEIADLK 712


>gi|313676676|ref|YP_004054672.1| excinuclease ABC, b subunit [Marivirga tractuosa DSM 4126]
 gi|312943374|gb|ADR22564.1| excinuclease ABC, B subunit [Marivirga tractuosa DSM 4126]
          Length = 674

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/667 (49%), Positives = 466/667 (69%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI  L KG+   E+ Q+LLGVTGSGKTFT+A ++E +Q+P +V++
Sbjct: 3   FKITSEYQPTGDQPKAIQALQKGVEEGEQDQVLLGVTGSGKTFTIANLVERVQKPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEA++P ++ YIEK+ SINE+I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPENAVEYFISYYDYYQPEAFIPSSNVYIEKDLSINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT +LL  R D IVV+SVSCIYGIG+ E + + I++L+ GD V + +LL + V   Y R
Sbjct: 123 SATSALLSGRRDVIVVASVSCIYGIGNPEEFGKNIIRLQQGDKVARNQLLFAFVDILYNR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD+++IF ++  D A+R+  +G++IE I    P TG+KI   + I I
Sbjct: 183 TTAEFKRGTFRVKGDTVDIFVAY-ADFAYRIMFWGDEIESIQRIDPETGKKISEEKIISI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VT +  L+ A+K I++++  ++   E++GR LEA+RL++R  +D+EM+   G C
Sbjct: 242 FPANLFVTGKDVLHQAIKEIQDDMVEQVKFFERDGRFLEAKRLQERTEFDIEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +ENYSRY   R PG  P  L +Y P+D L+ +DESHVT+PQ+  MY GD  RK  L +
Sbjct: 302 SGVENYSRYFDRRTPGTRPFCLLDYFPDDFLMVIDESHVTVPQVRAMYGGDRARKINLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YG+RLPS MDNRPL+F+E+  L   TI VSATP  +EL + +G +VEQ+IRPTGL+DP +
Sbjct: 362 YGYRLPSAMDNRPLKFDEFENLIGQTIFVSATPAEYELRKTEGSVVEQVIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ +EI+   +   R+L T LTKRMAE+L ++L    ++ RY+HSEV TL
Sbjct: 422 DVRPSGNQIDDLLEEIDERVKLNERVLCTTLTKRMAEELHKFLGRAGVKSRYIHSEVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EI+RDLRLG+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SL+QTIGRAA
Sbjct: 482 DRVEILRDLRLGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNQRSLVQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   KVI+YAD IT S+Q A+DET RRR  Q  +N++H I P++V +    ++   +  
Sbjct: 542 RNEKGKVIMYADKITDSMQQAMDETNRRRAIQKAYNEEHGITPKTVFKSRESILGQTVAV 601

Query: 740 DAAT------------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           D+              T+++ D     + K      + + +K+M  AA  L+F EAAR+R
Sbjct: 602 DSKKTSQKKYYAGIEETSVAADPVVQYMDKTGLDKMISATKKKMEKAAKELDFIEAARLR 661

Query: 788 DEIKRLK 794
           DE + L+
Sbjct: 662 DEWQELQ 668


>gi|292654206|ref|YP_003534103.1| excinuclease ABC subunit B [Haloferax volcanii DS2]
 gi|291371794|gb|ADE04021.1| excinuclease ABC subunit B [Haloferax volcanii DS2]
          Length = 698

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/665 (50%), Positives = 449/665 (67%), Gaps = 7/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AI  L +G      VQ LLGVTGSGKT T++ V+E +Q+P +V+A
Sbjct: 18  FRVDAPFDPAGDQPEAIEALARGFREGADVQTLLGVTGSGKTNTVSWVVEEIQKPTLVLA 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAY+ +TDTYI+K+ SINE+IDR+RH
Sbjct: 78  HNKTLAAQLYEEFKGLFPDNAVEYFVSYYDYYQPEAYIEQTDTYIDKDMSINEEIDRLRH 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL R+D IVV+SVS IYG+G  ++Y+ M ++L++G  +++ ELL +LV   Y+R 
Sbjct: 138 SATRSLLTRDDVIVVASVSAIYGLGDPKNYTDMSLRLEVGQGMDRDELLRALVDLNYERN 197

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   +GTFRV GD++E+FP +    A R+  +G++I+ + +  PL G+   +   + ++
Sbjct: 198 DVDFRQGTFRVRGDTVEVFPMYGR-YAVRIEFWGDEIDRMLKLDPLEGEVKSSEPAVLVH 256

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HY  P   L  A+  I+E ++ R+   +++G L+ AQR+E+R T+D+EML  TG C 
Sbjct: 257 PAEHYSIPEEQLEGAISEIEELMEQRVKHFQRQGDLVAAQRIEERTTFDIEMLRETGHCS 316

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L+ R PG+ P TL +Y P+D L  +DESHVT+PQI G Y GD  RK +L E 
Sbjct: 317 GIENYSVHLSDREPGDAPYTLLDYFPDDFLTVIDESHVTLPQIKGQYAGDKSRKDSLVEN 376

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+  DNRPL FEE+      T+  SATPG +E E     IVEQI+RPT LVDP VE
Sbjct: 377 GFRLPTAYDNRPLTFEEFEETVGQTLFASATPGDYEREHSDQ-IVEQIVRPTHLVDPKVE 435

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +  A  QV+D+   I+    +  R+L+T LTKRMAEDLTEYL E  + V YMH E  TLE
Sbjct: 436 VTEATGQVDDLMARIDERIDRDERVLVTTLTKRMAEDLTEYLEEAGVDVAYMHDETDTLE 495

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E+IR LRLG  DVLVGINLLREGLDIPE  LVAILDAD++GFLRS+T+L+QT+GRAAR
Sbjct: 496 RHELIRSLRLGDIDVLVGINLLREGLDIPEVSLVAILDADQQGFLRSETTLVQTMGRAAR 555

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +V+LYAD +T +++ AI ET RRR  Q E N++H   P ++++++ E   P    D
Sbjct: 556 NVNGEVVLYADEMTDAMEAAISETQRRRRIQQEFNEEHGYTPTTIEKEVGETNLPGSKTD 615

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
             T  +S D         +    +  L  +M  AADNL FE AA IRD I+ L+      
Sbjct: 616 --TRGVSGDE---PADADEAVEQIAFLEDRMQEAADNLEFELAADIRDRIQNLRREFDVD 670

Query: 801 GLDDS 805
            L+D 
Sbjct: 671 ALEDG 675


>gi|45358290|ref|NP_987847.1| excinuclease ABC subunit B [Methanococcus maripaludis S2]
 gi|74579596|sp|Q6LZA2|UVRB_METMP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|44921048|emb|CAF30283.1| excinuclease ABC subunit B [Methanococcus maripaludis S2]
          Length = 646

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/660 (50%), Positives = 452/660 (68%), Gaps = 29/660 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI--HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           F+++ ++ P G Q  AIA L+K +  +  +  Q LLGVTGSGKTFT+A VIE +Q+P +V
Sbjct: 6   FKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLV 65

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQLY+EFK FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +I++M
Sbjct: 66  IAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQM 125

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R  AT ++L R D I+V+SVSCIYG+G+ E + +M  +LK+G+ +++ +++  LV  QY+
Sbjct: 126 RLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYE 185

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ ++ G FRV GD+++I P + +D+  RV MFG++I+ I E  P    K   +++  
Sbjct: 186 RNDMELVPGRFRVKGDTLDIIPGYQDDI-LRVEMFGDEIDRIYELDPKNMSKKHEIDSFY 244

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y   H+V P      A+  I +EL   L  L+    +L++ RL+Q+  YD+EM+E TGS
Sbjct: 245 MYPAKHFVIPEEDKKNAINSILKELDEWLPNLD----MLKSHRLKQKTLYDIEMIEETGS 300

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+   R  GEP   L +Y PED L+ +DESH TIPQI GMY+GD  RK +L 
Sbjct: 301 CKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSLI 360

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+FEE+       I VSATPG +EL+    + VEQIIRPTGL+DP 
Sbjct: 361 DYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSNQV-VEQIIRPTGLLDPE 419

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VEIR    QVED+  E     ++G R+L+T LTKR+AE+LTEYL +RN++ RY+HS++ T
Sbjct: 420 VEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDT 479

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR+LRLGKFD LVGINLLREGLDIPE G V ILDADKEGFLR+  SLIQTIGRA
Sbjct: 480 IERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRA 539

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS----VKEKIMEVID 734
           ARN NSKV+LYA  +T SI+ A+ ET RRR+ Q EHN+KHNI PQ+    ++EK++++ D
Sbjct: 540 ARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKVVDISD 599

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              +  A   N+ ++ +       +                    FE+A +IRD I +LK
Sbjct: 600 VKHIPVADIPNVIVELEAEMYEAAEALE-----------------FEKAIKIRDTIAKLK 642


>gi|257387213|ref|YP_003176986.1| excinuclease ABC subunit B [Halomicrobium mukohataei DSM 12286]
 gi|257169520|gb|ACV47279.1| excinuclease ABC, B subunit [Halomicrobium mukohataei DSM 12286]
          Length = 684

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/667 (50%), Positives = 450/667 (67%), Gaps = 8/667 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F++   + P+GDQP AI QL+ G       Q LLGVTGSGKT T++  IE +Q+P +V
Sbjct: 16  TAFRVDAPFEPAGDQPDAIEQLVDGYRRGMDKQTLLGVTGSGKTNTVSWAIEELQQPTLV 75

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQLY EF++ FP NAVEYFVSYYDYYQPEAYV +TDTYI+K++SIN++IDR+
Sbjct: 76  IAHNKTLAAQLYEEFRSLFPDNAVEYFVSYYDYYQPEAYVEQTDTYIDKDASINDEIDRL 135

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSATRSLL R+D IVV+SVS IYG+G   +Y  M ++L+ G  +E+ ELL  LV   Y+
Sbjct: 136 RHSATRSLLTRDDVIVVASVSAIYGLGDPRNYVDMSLRLEEGQQIERDELLGQLVDLNYE 195

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   +GTFRV GD++EI+P +    A RV M+G++I+ + +  PL G+ +     + 
Sbjct: 196 RNDVDFTQGTFRVRGDTVEIYPMYGR-YAVRVDMWGDEIDRLVKMDPLEGEVVSQEPAVL 254

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++   HY  P   L  A++ I++ L  R+   E++G  + AQR+E+R T+DLEM++ TG 
Sbjct: 255 LHPAEHYSIPEQRLQRAIEEIEDMLADRIRYFERQGDAVAAQRIEERTTFDLEMMKETGY 314

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYS +L+ R  GE P TL +Y PED L  VDESH TIPQI G + GD  RK +L 
Sbjct: 315 CSGIENYSVHLSDRESGEAPYTLLDYFPEDFLTVVDESHQTIPQIKGQFEGDKSRKESLV 374

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E GFRLP+  DNRPL FEE+      T+ VSATPG +E E+  G +VEQI+RPT LVDP 
Sbjct: 375 ENGFRLPTAFDNRPLTFEEFEEKTDRTLYVSATPGDYEREES-GQVVEQIVRPTHLVDPA 433

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+  A  QV+D+ + I     +  R+L+T LTKRMAEDLTEYL E  + V YMH E  T
Sbjct: 434 IEVADASGQVQDLLERIESMPDEE-RVLVTTLTKRMAEDLTEYLEESGVDVAYMHDETDT 492

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER E+IR LRLG+  VLVGINLLREGLDIPE  LVAILDAD+EGFLRS+T+L+QT+GRA
Sbjct: 493 LERHELIRSLRLGEIQVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTLVQTMGRA 552

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN +V+LYAD  + +++ AI+ET RRR+ Q  +N++H   P +++++I E   P   
Sbjct: 553 ARNVNGEVVLYADDTSDAMRSAIEETQRRRQIQQAYNEEHGFEPTTIEKEIGESSLP--- 609

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
              A T+ S  A        +    +  L  +M  AADNL FE AA IRD I+ L+    
Sbjct: 610 --GAETDTSDVAGDGPADADEAARQIDRLEARMAEAADNLEFELAADIRDRIRELREEFE 667

Query: 799 FQGLDDS 805
             G DD 
Sbjct: 668 LDGGDDG 674


>gi|73670177|ref|YP_306192.1| excinuclease ABC subunit B [Methanosarcina barkeri str. Fusaro]
 gi|72397339|gb|AAZ71612.1| Excinuclease ABC subunit B [Methanosarcina barkeri str. Fusaro]
          Length = 670

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/658 (51%), Positives = 457/658 (69%), Gaps = 27/658 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P G QP AI +L++G+   E+ Q LLGVTGSGKT+T+A VI  ++RP +V+A
Sbjct: 30  FKLVSDFEPKGSQPQAIEKLVEGLEKGEQYQTLLGVTGSGKTYTVANVINQVRRPTLVIA 89

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK FFP N VEYFVSYYDYYQPE+Y+P  + YIEK++ IN +I++MR 
Sbjct: 90  HNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYLPARNQYIEKDAQINPKIEQMRL 149

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT SL+ R D IVV+SVSCIYG+G+ E++ +M  +LK+GD V++KE+L  LV+ Q++R 
Sbjct: 150 AATASLMSRQDVIVVASVSCIYGLGNPENFQKMGFELKVGDKVQRKEILQKLVEIQFERN 209

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ ++ G FRV GD+I+I P + +++  R+ +FG++++ ISE    TGQ+   ++   +Y
Sbjct: 210 DLELMPGRFRVKGDTIDIIPGYFDNII-RIELFGDEVDRISEVDKQTGQRTGEMDYFFVY 268

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HYV P     +A++ I EEL+  L EL      LE+ RL+QR  YD+EM++ TGSC+
Sbjct: 269 PARHYVIPEEEQKSAIQSILEELEEHLPELGL----LESHRLKQRTIYDMEMIQETGSCK 324

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+   R PGE P  L +Y PED L+ +DESH TIPQ+ GMY GD  RK +L +Y
Sbjct: 325 GIENYSRHFDHRQPGEQPFCLLDYFPEDFLMVIDESHQTIPQLHGMYNGDRSRKKSLVDY 384

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F+E+       I VSATP  +E E     IVEQIIRPTGLVDP VE
Sbjct: 385 GFRLPSAYDNRPLKFDEFEKYMRNVIFVSATPSDYEREHS-AHIVEQIIRPTGLVDPEVE 443

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV DV  EI    ++G R L+T LTK++AE+LTEYL    I+ RY+HS++KT+E
Sbjct: 444 IRPLEGQVRDVMQEIRKIVERGDRALVTTLTKKLAEELTEYLARNEIKARYLHSDIKTIE 503

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLGKFDVLVGINLLREGLDIPE G + ILDADKEGFLR   SLIQ IGRAAR
Sbjct: 504 RTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDSKSLIQIIGRAAR 563

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS----VKEKIMEVIDPI 736
           N +SKV+LYAD +T SI+ A+ ET RRR  Q+ +NK+H I P +    ++EK++++ D  
Sbjct: 564 NASSKVVLYADNMTDSIKKAVTETERRRSMQIAYNKEHGIVPTTIRKPIREKVVDITDTK 623

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +      N+ I+                 L  +M  AAD L+FE A ++R+ IK+L+
Sbjct: 624 HIPKTDIPNMIIE-----------------LETEMREAADRLDFERAIQVREMIKKLE 664


>gi|55981861|ref|YP_145158.1| excinuclease ABC subunit B [Thermus thermophilus HB8]
 gi|62299025|sp|Q56243|UVRB_THET8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|55773274|dbj|BAD71715.1| excinuclease ABC subunit B (UvrB) [Thermus thermophilus HB8]
          Length = 665

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/647 (52%), Positives = 449/647 (69%), Gaps = 11/647 (1%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P GDQP AIA L++ +   E+   LLG TG+GKT TMAKVIEA+ RPA+V+APNKILAAQ
Sbjct: 10  PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQ 69

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L +EF+  FP NAVEYF+SYYDYYQPEAYVP  D YIEK++SIN +I+R+RHS TRSLL 
Sbjct: 70  LAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLT 129

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           R D IVV+SVS IYG+G    Y    + ++ G    ++ LL  L++  Y+R DI +  G 
Sbjct: 130 RRDVIVVASVSAIYGLGDPREYRARNLVVERGKPYPREVLLERLLELGYQRNDIDLSPGR 189

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           FR  G+ +EIFP++ E    RV +FG+++E IS+ +P+TG+++R +    ++  +HY++P
Sbjct: 190 FRAKGEVLEIFPAY-ETEPIRVELFGDEVERISQVHPVTGERLRELPGFVLFPATHYLSP 248

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
                   +  KE  + R+   E+ G +L AQRL++R  YDLEML   G+C  +ENY+RY
Sbjct: 249 EGLEEILKEIEKELWE-RVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARY 307

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
            TG+ PGEPP TL +Y PED L+F+DESHVT+PQ+ GMYRGD+ RK TL +YGFRLPS +
Sbjct: 308 FTGKAPGEPPYTLLDYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSAL 367

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           DNRPLRFEE+       + VSATPG +EL    G +VEQIIRPTGL+DP V ++    Q+
Sbjct: 368 DNRPLRFEEFLERVSQVVFVSATPGPFELAHS-GRVVEQIIRPTGLLDPLVRVKPTENQI 426

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            D+ + I   A +G R L+TVLT RMAE+LT +L E  IR RY+H E+   ER  +IRDL
Sbjct: 427 LDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFERQALIRDL 486

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           RLG +D LVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAARN   +V L
Sbjct: 487 RLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWL 546

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           YAD +++++Q AI+ET RRR  Q  +N +H I P++V++++  VI P   E+A       
Sbjct: 547 YADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEAPL----- 601

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              +  LS +  +  +  L   M  AA+ L+FE AAR+RDEI+ L++
Sbjct: 602 ---EADLSGEDLRERIAELELAMWQAAEALDFERAARLRDEIRALEA 645


>gi|222481042|ref|YP_002567279.1| excinuclease ABC, B subunit [Halorubrum lacusprofundi ATCC 49239]
 gi|222453944|gb|ACM58209.1| excinuclease ABC, B subunit [Halorubrum lacusprofundi ATCC 49239]
          Length = 684

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/659 (51%), Positives = 452/659 (68%), Gaps = 7/659 (1%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206
           + P+GDQP AIA+L++G  S    Q LLGVTGSGKT T++ V E + +P +V+A NK LA
Sbjct: 25  FEPAGDQPEAIAELVEGFESGADKQTLLGVTGSGKTNTVSWVAEELNQPTLVLAHNKTLA 84

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266
           AQLY EF+  FP NAVEYFVSYYDYYQPEAYV +TDT+I+KE SINE+IDR+RHSATRSL
Sbjct: 85  AQLYEEFRELFPDNAVEYFVSYYDYYQPEAYVEQTDTFIDKEMSINEEIDRLRHSATRSL 144

Query: 267 LERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
           L RND IVV+SVS IYG+G  ++Y  M ++L++G+ V ++ELL+ LV   Y+R D+   +
Sbjct: 145 LTRNDVIVVASVSAIYGLGDPQNYRDMALRLEVGEEVGREELLARLVDLNYERNDVDFTQ 204

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           GTFRV GD++EI+P +    A RV ++G +I+ + +  P+ G+ +     + ++   HY 
Sbjct: 205 GTFRVRGDTVEIYPMYGR-YAVRVELWGEEIDRMLKVDPMKGEVVSEEPAVMLHPAEHYS 263

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
            P   L  A+  I+  ++ R+   E++G L+ AQR+E+R T+D+EML   G C  IENYS
Sbjct: 264 IPDDKLEQAIAEIQGLMEKRVGYFERQGDLVAAQRIEERTTFDIEMLREAGYCSGIENYS 323

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS 506
            ++  R  G+ P TL +Y P+D L  +DESH TIPQI G Y GD  RK +L E GFRLP+
Sbjct: 324 VHMDDRESGDAPYTLMDYFPDDFLTVIDESHQTIPQIKGQYEGDKSRKDSLVENGFRLPT 383

Query: 507 CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
             DNRPL FEE+      T+ VSATP  +E E     I EQI+RPT LVDP VE+  A  
Sbjct: 384 AYDNRPLTFEEFEEKSDRTLYVSATPSDYERETSDR-IAEQIVRPTHLVDPKVEVTEATG 442

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           QVED+ + +N   ++  R+L+T LTKRMAEDLTEY  E  I V YMH E  TLER EIIR
Sbjct: 443 QVEDLLERVNERIERDERVLVTTLTKRMAEDLTEYFEEAGIDVAYMHDETDTLERHEIIR 502

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           DLRLG  DVLVGINLLREGLDIPE  LVAILDAD+EGFLRS T+L+QT+GRAARNVN +V
Sbjct: 503 DLRLGNIDVLVGINLLREGLDIPEVSLVAILDADQEGFLRSTTTLVQTMGRAARNVNGEV 562

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
           +LYAD +T S++ AI+ET RRRE QL+HN++H     ++ + + E   P    D  T+N+
Sbjct: 563 VLYADRMTDSMEAAIEETQRRREIQLKHNEEHGYEAATIDKPVSETNLPGSKTD--TSNV 620

Query: 747 SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           S+   +   S ++ KA +++L  +M  AA NL FE AA IRD I +L+ +    G DD 
Sbjct: 621 SVGDVE---SAEEAKAQIEALEDRMDEAASNLEFELAADIRDRIAKLRRAFELDGGDDG 676


>gi|229496125|ref|ZP_04389846.1| excinuclease ABC subunit B [Porphyromonas endodontalis ATCC 35406]
 gi|229316956|gb|EEN82868.1| excinuclease ABC subunit B [Porphyromonas endodontalis ATCC 35406]
          Length = 676

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/665 (50%), Positives = 450/665 (67%), Gaps = 10/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI+QL+ G+      Q LLGVTGSGKTFT+A VI    RP ++++
Sbjct: 3   FELTSQYKPTGDQPEAISQLVAGLKQNIPAQTLLGVTGSGKTFTIANVIAQANRPTLIVS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAY+  TDTYIEK+ +IN +I++MR 
Sbjct: 63  HNKTLAAQLYSEFKAFFPHNAVEYFVSYYDYYQPEAYLATTDTYIEKDMAINAEIEKMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             T SLL  R D IVVSSVSC+YG+     +S  I+ LK G +  +  L+  L    Y  
Sbjct: 123 RTTASLLSGRRDVIVVSSVSCLYGMADPHVFSDCIITLKRGMTYPRSRLMRDLAASYYIN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
             +    G+FRV GD+I+IFP+    + VA+RV  + ++I+ +S  +P++G     ++ +
Sbjct: 183 NKVDFTSGSFRVNGDTIDIFPAIEGYDGVAYRVEYWDDEIDSLSVIHPVSGTIQGELDNL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + +VT +     A++ IK++L +R+ ELE   +  EA RL++R+ YD+EM+   G
Sbjct: 243 SIYPANLFVTTKEQTKQAIEEIKKDLALRVAELESMEKHYEATRLQERVKYDVEMISEIG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR+ G  P  L +Y P+D LL VDESHVTIPQ+  MY GD  RK +L
Sbjct: 303 YCTGIENYSRYFDGRSAGARPFCLLDYFPQDFLLVVDESHVTIPQVRAMYGGDKARKTSL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLP+ +DNRPL F+E+  L P+TI +SATP  +ELE+ +G+I+EQIIRPTGL DP
Sbjct: 363 VDYGFRLPAALDNRPLTFDEFRELTPSTIYISATPAEYELEESEGVIIEQIIRPTGLPDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    QV+D+ +EI    ++  R+L+T LTKRMAE+L+EYL    I   Y+HS+V 
Sbjct: 423 IIEVRPTEHQVDDLMEEIQQRRERHQRVLVTTLTKRMAEELSEYLQRAGIATAYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERI I+ +LR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERIRILDELRKGVFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--- 734
           AAR+V  KV+ YAD +T+S+Q  IDET  RRE+QL +NK +NI P+ V +  + ++    
Sbjct: 543 AARHVEGKVLFYADKVTESMQQTIDETADRRERQLAYNKANNITPRQVVKSGISLVSGGD 602

Query: 735 -PILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            P  L   A    SI   D     LS  + ++ L S RK+M+ AA  L+F EAAR+RDE 
Sbjct: 603 LPSTLPAQAYIESSIPTKDPMVEYLSASQLRSLLDSTRKKMYEAAKALDFSEAARLRDEA 662

Query: 791 KRLKS 795
             L++
Sbjct: 663 NDLET 667


>gi|159904552|ref|YP_001548214.1| excinuclease ABC subunit B [Methanococcus maripaludis C6]
 gi|159886045|gb|ABX00982.1| excinuclease ABC, B subunit [Methanococcus maripaludis C6]
          Length = 646

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/660 (50%), Positives = 452/660 (68%), Gaps = 29/660 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI--HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           F+++ D+ P G QP AIA+L+  +  +  +  Q LLGVTGSGKTFT+A VIE +Q+P +V
Sbjct: 6   FKLKADFKPKGSQPEAIAELVNDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLV 65

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQLY+EFK FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +I++M
Sbjct: 66  IAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQM 125

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R  AT ++L R D I+V+SVSCIYG+G+ E + +M  +LK+GD +++ +++  LV  QY+
Sbjct: 126 RLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGDKIKRSDIIEKLVDIQYE 185

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ ++ G FRV G++++I P + +D+  RV MFG++I+ I E  P    K   +++  
Sbjct: 186 RNDMELVPGRFRVKGETLDIIPGYQDDI-LRVEMFGDEIDRIYELDPKNMSKKHELDSFY 244

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y   H+V P      A+  I +EL   L  L+    +L++ RL+Q+  YD+EM+E TGS
Sbjct: 245 MYPAKHFVIPEEDKKNAITSILKELDEWLPHLD----MLKSHRLKQKTLYDIEMIEETGS 300

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+   R  GEP   L +Y PED L+ +DESH T+PQI GMY+GD  RK +L 
Sbjct: 301 CKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTLPQIRGMYKGDRSRKQSLI 360

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPLRFEE+       I VSATPG +EL+    + VEQIIRPTGL+DP 
Sbjct: 361 DYGFRLPSAYDNRPLRFEEFKKYMNNVIFVSATPGEYELDNSNQV-VEQIIRPTGLLDPE 419

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VEIR    QVED+  E     ++G R+L+T LTKR+AE+LTEYL +RN++ RY+HS++ T
Sbjct: 420 VEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDT 479

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR+LRLGKFD LVGINLLREGLDIPE G V ILDADKEGFLR+  SLIQTIGRA
Sbjct: 480 IERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRA 539

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS----VKEKIMEVID 734
           ARN NSKV+LYAD +T SI+ A+ ET RRR  Q E+N+ HNI P++    ++EK++++ D
Sbjct: 540 ARNANSKVVLYADKMTDSIKKAVFETERRRNLQKEYNETHNITPKTIVKPIREKVVDISD 599

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              +  A   N+ I+ +       +                    FE+A +IRD I +LK
Sbjct: 600 VKHIPVADIPNVIIELEAEMYEAAEALE-----------------FEKAIKIRDTIAKLK 642


>gi|169351518|ref|ZP_02868456.1| hypothetical protein CLOSPI_02298 [Clostridium spiroforme DSM 1552]
 gi|169291740|gb|EDS73873.1| hypothetical protein CLOSPI_02298 [Clostridium spiroforme DSM 1552]
          Length = 657

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/656 (52%), Positives = 454/656 (69%), Gaps = 5/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P GDQ  AI +L+ G+ + +K Q+LLG TG+GKTFT++ VI A+ +P +V+A
Sbjct: 4   FKLVSPFKPMGDQIEAIDKLVAGVKAGKKEQVLLGGTGTGKTFTVSNVIAAVNKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFP N VEYF+S +D+YQPEAY+P  D YI+K +  N +I+ +R 
Sbjct: 64  HNKTLAGQLYSELKEFFPENRVEYFISNFDFYQPEAYIPGRDLYIDKNAKTNYEIEMLRS 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +A  SL+ER D IVV+SV+ IYG+G+ E Y +MI  L++G  +++KELL+ LV +QY+R 
Sbjct: 124 AAMNSLIEREDVIVVASVASIYGLGNPEQYKEMIFALRVGQDIDRKELLTYLVDRQYQRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   +GTFRV GD IEI P H E+   R+ +FG+ +E I+E  PLTG  +    T  IY
Sbjct: 184 DIEQTKGTFRVRGDVIEIVPGHTENWLIRIELFGDTVERITEVDPLTGHVLGAYNTYTIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               YVT +  +  A   I +EL+ RL E   E +LLE +RL+QR  +D+EML   G C 
Sbjct: 244 PAYGYVTKKEQILKACDTITKELEERLKEFRDETKLLEYERLDQRTRHDVEMLREVGMCP 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G+ P TL +Y P+D L+ VDESHV +PQ+ GMY GD  RK TL EY
Sbjct: 304 GIENYSRHIDGRKEGQRPYTLIDYFPKDFLMIVDESHVMLPQVRGMYNGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  +    I VSATPG +ELE     +VEQIIRPTGL+DP +E
Sbjct: 364 GFRLPSALDNRPLRFEEFEKIINQVIYVSATPGDYELEHVNNEVVEQIIRPTGLLDPKIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI +  ++  R+L+T LTKRMAEDL+ YL E  I+V Y+HS+ KTLE
Sbjct: 424 VRPTANQIDDIISEIKMRQEKNERVLITTLTKRMAEDLSAYLKELGIKVAYLHSDTKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RDLR+GK+DVLVGINLLREGLD+PE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 484 RTEILRDLRIGKYDVLVGINLLREGLDLPEVSLVCILDADKEGFLRSNRSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-DPILLE 739
           N N +VI+Y D IT S+  AI+ET RRR+ Q  +NK+HNI P ++ ++I + I    +++
Sbjct: 544 NSNGEVIMYGDKITDSMAYAIEETNRRRKIQDAYNKEHNIIPTTIHKEIRDAIRGQEVID 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           DAA    S+  +    SKK  +A +  L KQM  AA  L+FE A  +RD I  L+ 
Sbjct: 604 DAA----SLVKKGRKASKKDKQAMIHELEKQMKDAAKVLDFERAMELRDIIMELQG 655


>gi|315655348|ref|ZP_07908248.1| excision endonuclease subunit UvrB [Mobiluncus curtisii ATCC 51333]
 gi|315490288|gb|EFU79913.1| excision endonuclease subunit UvrB [Mobiluncus curtisii ATCC 51333]
          Length = 723

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/697 (50%), Positives = 464/697 (66%), Gaps = 45/697 (6%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ ++Y PSGDQP AIA+L + I+S EK  +LLG TG+GKT T A +IE +QRP +V+ 
Sbjct: 18  LEVVSEYTPSGDQPEAIAELAERINSGEKDVVLLGATGTGKTATTAWLIEKLQRPTLVLE 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAYVP+TDTYIEK+S+IN++++R+RH
Sbjct: 78  PNKTLAAQLTAEFRELLPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSAINDEVERLRH 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ E Y    + L  G  +E++ L+   V+ QY R 
Sbjct: 138 SATNSLLTRRDVVVVSSVSCIYGLGTPEEYVSRGIHLTRGMQIERQHLIKRFVQMQYNRN 197

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD+I+I P + E++  RV MFG++I+ ++  +P+TG  +  V  I ++
Sbjct: 198 DVEFTRGNFRVRGDTIDIIPMY-EELGVRVEMFGDEIDALALLHPVTGATLHEVNEIYVF 256

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I+ EL+ R      +G+LLE QRL  R TYDLEML   G C 
Sbjct: 257 PASHYVAGPERMERALAGIESELEERCKWFHDQGKLLEEQRLRMRTTYDLEMLRQIGMCA 316

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR PGEPP TL +Y PED LL +DESHVT+PQI GM+ GD  RK TL ++
Sbjct: 317 GIENYSLHIDGRQPGEPPHTLLDYFPEDFLLVIDESHVTVPQIGGMFEGDMSRKRTLVDF 376

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++EE+      T+ +SATPG +EL    G +VEQIIRPTGLVDP + 
Sbjct: 377 GFRLPSAMDNRPLKWEEFQDRIGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLVDPKIV 435

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    QV+D+ ++I L  +   R+L+T LTKRMAEDLT YL +R IRV Y+HS+V TL 
Sbjct: 436 VKPVEGQVDDLMEQIRLRTEADERVLVTTLTKRMAEDLTTYLAQRGIRVEYLHSDVDTLR 495

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LR G+FDVLVGINLLREGLD+PE  LV+ILDADK+GFLRS  SLIQTIGRAAR
Sbjct: 496 RVELLRSLRQGEFDVLVGINLLREGLDLPEVSLVSILDADKQGFLRSTKSLIQTIGRAAR 555

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD ++ +++ AI+ET RRR KQ+ +N+ H I+PQ +++KI +V D +  ED
Sbjct: 556 NVHGEVHMYADAVSDAMRDAIEETERRRHKQIAYNEAHGIDPQPLRKKISDVTDMLARED 615

Query: 741 AATTNI---------------------------------------SIDAQQLSLSKKKGK 761
             T  +                                       + + Q       +  
Sbjct: 616 IDTAELLGTGYRQPDQKPSAAVRSAAQDTAAARAALEVINRARVNATEDQPSQAGADENT 675

Query: 762 AHLKS----LRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L S    L  QMH AA  L FE AAR+RDEI  LK
Sbjct: 676 VDLPSLVAELTNQMHTAASELRFELAARLRDEIADLK 712


>gi|255961258|ref|YP_003097816.1| DNA excision repair helicase [Onion yellows phytoplasma OY-M]
 gi|294862472|sp|Q6YQE1|UVRB_ONYPE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|162809328|dbj|BAF95573.1| helicase subunit of the DNA excision repair [Onion yellows
           phytoplasma OY-M]
          Length = 670

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/663 (49%), Positives = 453/663 (68%), Gaps = 14/663 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++Q+   PSGDQP AI +L+       + Q+LLG TG+GKTFT+A +I+ +Q+  +V+
Sbjct: 6   LFKLQSSLKPSGDQPQAIQKLVNNFKQGLQEQILLGATGTGKTFTIANIIQHLQQKTLVI 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLY+E K  FP+N VEYF+SYYDYYQPEAYV  +DTYIEK+S IN++ID++R
Sbjct: 66  AHNKTLAGQLYNELKAMFPNNRVEYFISYYDYYQPEAYVASSDTYIEKDSKINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSA  SLL R+D IVV+SVSCIYG+G ++ Y +  + L+IGD  E++ L++ L++ +Y+R
Sbjct: 126 HSAAGSLLNRDDVIVVASVSCIYGVGDLKDYQKSTLHLQIGDKYERQALINKLIELKYQR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +I   RGTFRV GD IEI  S  +++  R+  FGN+IE I  F  L G+ I N++ I +
Sbjct: 186 NEINFQRGTFRVRGDIIEIIASSSKEIGIRIIFFGNEIENIQNFDVLNGKAITNLKLITL 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  S Y T    L   +K I++ELK ++   EK  +LL AQ+++ R  +DLEMLE  G+C
Sbjct: 246 FPASLYATNTQKLQEGIKRIRQELKEQINHFEKTNQLLAAQKIKMRTLHDLEMLEQIGNC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +ENYSR+L  +  GE P TL ++   + L  +DESHVTIPQI GMY GDF RK  L  
Sbjct: 306 NGVENYSRHLALKEKGEAPSTLIDFFGNEFLTIIDESHVTIPQIKGMYFGDFSRKTNLVN 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F E+       I +SATPG++EL + +  IVEQIIRPT ++DP +
Sbjct: 366 FGFRLPSALDNRPLKFHEFQAKMNKVIYLSATPGNYELTK-KIPIVEQIIRPTFVLDPEI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR    Q++D+Y EI    +   RIL+T LT  M+EDLT YL    I+V Y+HSE+K+L
Sbjct: 425 EIRPTHNQMDDLYFEIKHQTKNNQRILITTLTINMSEDLTAYLKNLCIKVAYLHSEIKSL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EI++DLRLGK+D LVG+NLLREGLD+PE  LVAILDADK+GFLR++ SLIQTIGRAA
Sbjct: 485 QRLEILKDLRLGKYDCLVGVNLLREGLDLPEVALVAILDADKQGFLRNERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K I+YAD I+ ++Q+AI+ET RRR+ Q ++N+   + P ++ + I+E I     E
Sbjct: 545 RNITGKAIMYADCISPAMQIAIEETYRRRKIQQQYNETMKVTPTALNKTILETISIKQKE 604

Query: 740 DAATTNISIDAQQLSLSKKKGKAH---------LKSLRKQMHLAADNLNFEEAARIRDEI 790
            A   N +   +     +KK + H         +K L+K M  AA  L+FE+AA +RD I
Sbjct: 605 SAQNENENGKVK----GQKKLQTHTNITAKNKEIKRLQKMMKEAAKTLDFEKAATLRDLI 660

Query: 791 KRL 793
             L
Sbjct: 661 LEL 663


>gi|7546428|pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
           Excision Repair Enzyme
 gi|1325924|dbj|BAA08653.1| UvrB [Thermus thermophilus]
          Length = 665

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/647 (52%), Positives = 449/647 (69%), Gaps = 11/647 (1%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P GDQP AIA L++ +   E+   LLG TG+GKT TMAKVIEA+ RPA+V+APNKILAAQ
Sbjct: 10  PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQ 69

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L +EF+  FP NAVEYF+SYYDYYQPEAYVP  D YIEK++SIN +I+R+RHS TRSLL 
Sbjct: 70  LAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLT 129

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           R D IVV+SVS IYG+G    Y    + ++ G    ++ LL  L++  Y+R DI +  G 
Sbjct: 130 RRDVIVVASVSAIYGLGDPREYRARNLVVERGKPYPREVLLERLLELGYQRNDIDLSPGR 189

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           FR  G+ +EIFP++ E    RV +FG+++E IS+ +P+TG+++R +    ++  +HY++P
Sbjct: 190 FRAKGEVLEIFPAY-ETEPIRVELFGDEVERISQVHPVTGERLRELPGFVLFPATHYLSP 248

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
                   +  KE  + R+   E+ G +L AQRL++R  YDLEML   G+C  +ENY+RY
Sbjct: 249 EGLEEILKEIEKELWE-RVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARY 307

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
            TG+ PGEPP TL +Y PED L+F+DESHVT+PQ+ GMYRGD+ RK TL +YGFRLPS +
Sbjct: 308 FTGKAPGEPPYTLLDYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSAL 367

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           DNRPLRFEE+       + VSATPG +EL    G +VEQIIRPTGL+DP V ++    Q+
Sbjct: 368 DNRPLRFEEFLERVSQVVFVSATPGPFELAHS-GRVVEQIIRPTGLLDPLVRVKPTENQI 426

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            D+ + I   A +G R L+TVLT RMAE+LT +L E  IR RY+H E+   +R  +IRDL
Sbjct: 427 LDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDL 486

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           RLG +D LVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAARN   +V L
Sbjct: 487 RLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWL 546

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           YAD +++++Q AI+ET RRR  Q  +N +H I P++V++++  VI P   E+A       
Sbjct: 547 YADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEAPL----- 601

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              +  LS +  +  +  L   M  AA+ L+FE AAR+RDEI+ L++
Sbjct: 602 ---EADLSGEDLRERIAELELAMWQAAEALDFERAARLRDEIRALEA 645


>gi|134045892|ref|YP_001097378.1| excinuclease ABC subunit B [Methanococcus maripaludis C5]
 gi|132663517|gb|ABO35163.1| Excinuclease ABC subunit B [Methanococcus maripaludis C5]
          Length = 646

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/660 (50%), Positives = 454/660 (68%), Gaps = 29/660 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI--HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           F+++ D+ P G QP AIA+L+  +  +  +  Q LLGVTGSGKTFT+A VIE +Q+P +V
Sbjct: 6   FKLKADFEPKGSQPEAIAELVNELEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLV 65

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQLY+EFK FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +I++M
Sbjct: 66  IAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQRDQYIEKDAQINPKIEQM 125

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R  AT ++L R D I+V+SVSCIYG+G+ E + +M  +LK+G+ +++ +++  LV  QY+
Sbjct: 126 RLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYE 185

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ ++ G FRV GD+++I P + +D+  RV MFG++I+ + E  P    K   +++  
Sbjct: 186 RNDMELVPGRFRVKGDTLDIIPGYQDDI-LRVEMFGDEIDRMYELDPKNMTKKHELDSFY 244

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y   H+V P      A+  I +EL   L  L+    +L++ RL+Q+  YD+EM+E TGS
Sbjct: 245 MYPAKHFVIPEEDKKNAITSILKELDEWLPHLD----MLKSHRLKQKTLYDIEMIEETGS 300

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+   R  GEP   L +Y P+D L+ +DESH TIPQI GMY+GD  RK +L 
Sbjct: 301 CKGIENYSRHFENRKEGEPAYCLLDYFPDDFLIVIDESHQTIPQIRGMYKGDRSRKQSLI 360

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPLRFEE+       I VSATPG +EL++   + VEQIIRPTGL+DP 
Sbjct: 361 DYGFRLPSAYDNRPLRFEEFKKYMNNVIFVSATPGDYELDKSNQV-VEQIIRPTGLLDPE 419

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VEIR    QVED+  E     ++G R+L+T LTKR+AE+LTEYL +RN++ RY+HS++ T
Sbjct: 420 VEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDT 479

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR+LRLGKFD LVGINLLREGLDIPE G V ILDADKEGFLR+  SLIQTIGRA
Sbjct: 480 IERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRA 539

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS----VKEKIMEVID 734
           ARN NSKV+LYA+ +T SI+ A+ ET RRR  Q E+N+KHNI P++    ++EK++++ D
Sbjct: 540 ARNANSKVVLYANKMTDSIKKAVFETERRRNLQKEYNEKHNIAPKTIVKPIREKVVDISD 599

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              +  A   N+ I+ +       +                    FE+A +IRD I +LK
Sbjct: 600 VKHIPVADIPNVVIELEAEMYEAAEALE-----------------FEKAIKIRDTIAKLK 642


>gi|315638204|ref|ZP_07893386.1| excision endonuclease subunit UvrB [Campylobacter upsaliensis JV21]
 gi|315481740|gb|EFU72362.1| excision endonuclease subunit UvrB [Campylobacter upsaliensis JV21]
          Length = 656

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/660 (50%), Positives = 444/660 (67%), Gaps = 13/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+Q+++ PS DQ  AI  ++K I +  K Q LLGVTGSGKTFTMA VI+ +  P ++M+
Sbjct: 2   FQLQSEFKPSFDQKEAIEGIIKSIKAGHKYQTLLGVTGSGKTFTMANVIKELAMPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FFPHN +EYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R 
Sbjct: 62  HNKSLCAQLYSEFKGFFPHNHIEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL   D + ++SVS  YG+G+   Y  M++  +    + QK LL  LV   YKR 
Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPSEYEGMVLIFEENMQISQKALLKKLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD+++I+P++ ED   R+  FG+D+E I  +  L  +K ++++   +Y
Sbjct: 182 DTFFDRADFRVSGDTVDIYPAYYEDEVVRLEFFGDDLERIYHYNILENKKTKDLKRFILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S +      L  A+K IKEEL  RL   E E +L+E QRL+QR+ +DLEML++TG C+
Sbjct: 242 PTSQFSVGEARLKEAIKEIKEELNSRLAYFENENKLVEYQRLKQRVEFDLEMLQSTGMCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 302 GVENYARHLTGLKEGQTPYTLFDYYAIKKRPFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +YGFRLPS +DNRPL F+E+   NC     + VSATP   EL+     I  QI+RPTGL
Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELDLSGKNIFHQIMRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E++ +  QVE +YDE      +  RIL+TVLTK++AE+L+ Y  E  +RV+YMHS
Sbjct: 419 LDPIIELKDSHNQVEILYDEAKKVIARNERILVTVLTKKLAEELSRYYLELGLRVKYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER E+IR LR G+FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT
Sbjct: 479 DIDAIERNELIRGLRSGEFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KV+L+   ITKS+Q AID T+ RR+ Q E+NKKH I P SVK  + E + 
Sbjct: 539 MGRAARNVNGKVLLFCQKITKSMQEAIDTTSERRKLQEEYNKKHKITPTSVKRNLEESLK 598

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              L +        +    S   K     +K LRK+M  AA NL FE+AA +RDEIK+ K
Sbjct: 599 NEDLGEIYRKGAKFEKMPASERAK----FVKELRKEMLEAAKNLEFEKAAALRDEIKKFK 654


>gi|21229391|ref|NP_635313.1| excinuclease ABC subunit B [Methanosarcina mazei Go1]
 gi|23822295|sp|Q8PRZ9|UVRB_METMA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|20907982|gb|AAM32985.1| Excinuclease ABC, subunit B [Methanosarcina mazei Go1]
          Length = 670

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/658 (50%), Positives = 458/658 (69%), Gaps = 27/658 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P G QP AI +L+ G+   E  Q LLGVTGSGKT+T+A VI  +++P +V+A
Sbjct: 30  FKLVSDFEPKGSQPEAIEKLVDGLKKGEPFQTLLGVTGSGKTYTVANVINQIRKPTLVIA 89

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EF+ FFP N VEYFVSYYDYYQPE+Y+P  D YIEK++ IN +I++MR 
Sbjct: 90  HNKTLAAQLYNEFREFFPENRVEYFVSYYDYYQPESYLPAKDQYIEKDAMINPKIEQMRL 149

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT SL+ R D IVV+SVSCIYG+G+ E++ +M  +LK+GD V +KE+L  L+  Q++R 
Sbjct: 150 AATASLMSRQDVIVVASVSCIYGLGNPENFQKMGFELKVGDKVHRKEILEKLIDIQFERN 209

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ ++ G FRV GD+I+I P + +D+  R+ +FG++++ ISE    TGQ+  +++   +Y
Sbjct: 210 DLELMPGRFRVKGDTIDIIPGYFDDII-RIELFGDEVDRISEVDKQTGQRKEDMDYFFVY 268

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HYV P     +A+++I EEL+ RL EL      LE+ RL+QR  YD+EM++ TGSC+
Sbjct: 269 PARHYVIPEEEQKSAIQFILEELEERLPELGL----LESHRLKQRTLYDMEMIQETGSCK 324

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+   R PGE P  L +Y P+D LL +DESH TIPQ+ GMY GD  RK +L +Y
Sbjct: 325 GIENYSRHFDHRQPGEKPFCLLDYFPDDFLLVIDESHQTIPQLHGMYNGDRSRKKSLVDY 384

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+       I VSATP  +E E     +VEQIIRPTGLVDP VE
Sbjct: 385 GFRLPSAFDNRPLKFEEFEKYMKNVIFVSATPADYEREHSSR-VVEQIIRPTGLVDPEVE 443

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV DV  EI    ++G R L+T LTK++AE+LTE+L +  I+ RY+HS++KT+E
Sbjct: 444 VRPLEGQVRDVMQEIRKIVERGDRALVTTLTKKLAEELTEFLAKNEIKARYLHSDIKTIE 503

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLGKFDVLVGINLLREGLDIPE G + ILDADKEGFLR+  SLIQ IGRAAR
Sbjct: 504 RTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRNSKSLIQIIGRAAR 563

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS----VKEKIMEVIDPI 736
           N +S+V+LYAD +T SI+ A+ ET RRR  Q+ +N++H I P +    ++EK++++ D  
Sbjct: 564 NSSSRVVLYADNMTDSIKSAVQETERRRSMQIAYNEEHGIVPTTIRKPIREKVVDITDTK 623

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +      N+ I+                 L  +M  AAD L+FE A ++R+ IK+L+
Sbjct: 624 HIPKTDIPNVIIE-----------------LDAEMREAADRLDFERAIQVRELIKKLE 664


>gi|197294511|ref|YP_001799052.1| excinuclease ABC subunit B [Candidatus Phytoplasma australiense]
 gi|171853838|emb|CAM11787.1| Helicase subunit of the DNA excision repair complex [Candidatus
           Phytoplasma australiense]
          Length = 663

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/656 (49%), Positives = 454/656 (69%), Gaps = 7/656 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F+++TD  P+GDQP AI +L++G     K Q+LLG TG+GKTFT+A +I+ +Q+  +
Sbjct: 1   MNMFKLKTDLKPNGDQPQAIKKLVQGFEKGFKEQILLGATGTGKTFTIANIIQHLQQQTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LA QLY+E K  FP N VEYF+SYYDYYQPEAYV  +DTYIEK+S IN++ID+
Sbjct: 61  VIAHNKTLAGQLYNELKMMFPENKVEYFISYYDYYQPEAYVTSSDTYIEKDSKINDEIDQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+A  SLL R D IVV+SVSCIYG+G +E Y    + L+IGD  E+   L  LV+ ++
Sbjct: 121 LRHNAIVSLLNRKDVIVVASVSCIYGVGDLEDYQSSTLFLQIGDRFERNLFLKKLVELKF 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R ++   RGTFRV GD +EI PS  +++  R+  FG++IE I  F  L  + I N++  
Sbjct: 181 QRNEVNFGRGTFRVRGDIVEIIPSSHKEIGIRIIFFGDEIERIQLFELLNAKVIENLKVT 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           KI+  S Y      +  ++K I++ELK ++   EKE  L+ AQ+++ R ++DLEML   G
Sbjct: 241 KIFPASLYAVNAEKIKESIKRIRQELKEQIKHFEKEKNLVAAQKIKMRTSHDLEMLAEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L+ +  G+PP TL ++  ++ L  +DESHVT+PQI GMY GDF RK+ L
Sbjct: 301 HCSGIENYSRHLSLKEQGQPPSTLIDFFDKEFLTIIDESHVTVPQIKGMYFGDFSRKSNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL+F E+       I +SATPG  E+E+   II EQIIRPT ++DP
Sbjct: 361 VNYGFRLPSALDNRPLKFHEFEEKIDKIIYLSATPGDHEIERKLPII-EQIIRPTFVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E++  + Q++D+Y EI    Q+  R+L+T LT  M+EDLT YL    I+V Y+HSE+K
Sbjct: 420 EIEVKRTQNQMDDLYFEIKKRIQKNQRVLITTLTINMSEDLTAYLKNLGIKVTYLHSEIK 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           +L+R+EI+RDLRLGK+D LVG+NLLREGLD+PE  LVAILDADK+GFLR++ SLIQTIGR
Sbjct: 480 SLQRLEILRDLRLGKYDCLVGVNLLREGLDLPEVSLVAILDADKQGFLRNQRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ KVI+YAD  + +++LAI ET RRR+ Q ++N+K+ + P S+K+ I E +  I 
Sbjct: 540 AARNVDGKVIMYADNTSDAMKLAITETNRRRQIQKDYNQKNQLTPLSLKKNISESV-SIQ 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
            +D AT+      ++     K     +K L   M  AA+ L+FE+AA +RD I  L
Sbjct: 599 TKDKATS-----KKEPMFDLKNINQQIKKLTNDMKKAAEKLDFEKAASLRDLILEL 649


>gi|218295874|ref|ZP_03496654.1| excinuclease ABC, B subunit [Thermus aquaticus Y51MC23]
 gi|218243612|gb|EED10140.1| excinuclease ABC, B subunit [Thermus aquaticus Y51MC23]
          Length = 665

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/647 (51%), Positives = 446/647 (68%), Gaps = 11/647 (1%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P GDQP AI +LL+ +   E+   LLG TG+GKT TMAKVIEA+ RPA+V+APNKILAAQ
Sbjct: 10  PKGDQPKAIGELLEALRDGERYVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQ 69

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L +EF+  FP NAVEYF+SYYDYYQPEAYVP  D YIEK++SIN +I+R+RHS TRSLL 
Sbjct: 70  LAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLT 129

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           R D IVV+SVS IYG+G    Y    + ++ G    ++ LL  L+   Y+R +I +  G 
Sbjct: 130 RRDVIVVASVSAIYGLGDPREYRARNLVVERGMRYPREALLEKLLDLGYERNEIDLSPGR 189

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           FRV G+ +E+FP++ E    RV +FG+++E I + +P+TG+++R +    ++  +HY++P
Sbjct: 190 FRVRGEVLEVFPAY-ETEPIRVELFGDEVERILQVHPITGERLRELPGFVLFPATHYLSP 248

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
                   +  KE  + R+   E+ G +L AQRL++R  YDLEML   G+C  +ENY+RY
Sbjct: 249 EGLEEILKEIEKELWE-RVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARY 307

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
            TG+ PGEPP TL +Y PED L+F+DESHVT+PQ+ GMYRGD+ RK TL +YGFRLPS +
Sbjct: 308 FTGKAPGEPPFTLLDYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSAL 367

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           DNRPLRFEE+       + VSATPG +EL    G +VEQIIRPTGL+DP V ++    QV
Sbjct: 368 DNRPLRFEEFLEKVSQVVFVSATPGPFELAHS-GRVVEQIIRPTGLLDPLVRVKPTENQV 426

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            D+ + I   AQ+G R L+TVLT RMAE+LT++L E  IR RY+H E+   ER  +IRDL
Sbjct: 427 LDLMEGIRERAQRGERTLVTVLTVRMAEELTDFLVEHGIRARYLHHELDAFERQALIRDL 486

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           RLG FD LVGINLLREGLD+PE  LVAILDADK GFLRS+ SLIQTIGRAARN   +V L
Sbjct: 487 RLGHFDALVGINLLREGLDLPEVSLVAILDADKTGFLRSERSLIQTIGRAARNARGEVWL 546

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           YAD ++++++ AI ET RRR  Q  +N +H I P++V++ +  VI P   E        +
Sbjct: 547 YADQVSEAMEKAIRETNRRRAIQEAYNLEHGIVPKTVEKGVRAVIRP---EGYGEAPFEL 603

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +++  L     KA L  L   M  AA+ L+FE AA +RDEI+ L++
Sbjct: 604 PSEEEDL-----KARLAELELLMWQAAEALDFERAAALRDEIRALEA 645


>gi|119357816|ref|YP_912460.1| excinuclease ABC subunit B [Chlorobium phaeobacteroides DSM 266]
 gi|189037955|sp|A1BI09|UVRB_CHLPD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|119355165|gb|ABL66036.1| Excinuclease ABC subunit B [Chlorobium phaeobacteroides DSM 266]
          Length = 685

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/666 (50%), Positives = 449/666 (67%), Gaps = 14/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ ++Y P GDQP AI  L  G+   ++ Q LLGVTGSGKTFT++ VI  + +P +VM+
Sbjct: 9   YRLVSEYDPKGDQPKAIMALTDGVLRGDRWQTLLGVTGSGKTFTVSNVIAQVDKPVLVMS 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E + FFP NAVEYFVSYYD+YQPEAY+P  D YI K+  IN++I+R+R 
Sbjct: 69  HNKTLAAQLYGELRQFFPDNAVEYFVSYYDFYQPEAYLPALDKYIAKDLRINDEIERLRL 128

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             T SLL  R D IVVSSVSCIYG+GS + +   IV+L+ G   ++   L  LV   Y R
Sbjct: 129 KTTSSLLSGRRDVIVVSSVSCIYGLGSPDDWKAQIVELRSGMEKDRDLFLQELVSLHYIR 188

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+    G FRV GD I++ P+H E++A RV  FG++IE +  F   +G+ +       I
Sbjct: 189 DDVDPGPGKFRVRGDIIDLVPAH-EELALRVEFFGSEIESLQTFNIQSGELLGKDTYAFI 247

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    ++    TL  AM  I+ EL  RL EL ++ RL+EA+RLE+R  YDLEM++  G C
Sbjct: 248 YPARQFIAEAETLKQAMVAIENELAGRLNELRRDDRLVEARRLEERTRYDLEMMKELGYC 307

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L GR+ GE P  L +Y PED L+ VDESHVT+PQI GMY GD  RKA L E
Sbjct: 308 SGIENYSRHLAGRSEGERPYCLLDYFPEDFLVIVDESHVTLPQIRGMYGGDRSRKAILVE 367

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEE+  + P  I VSATPG  ELE+C G++VEQ++RPTGL+DPPV
Sbjct: 368 HGFRLPSALDNRPLRFEEFTEIVPQVICVSATPGDLELERCGGVVVEQLVRPTGLLDPPV 427

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + Q++D+  EI     +G + L+  LTKRM+EDL +Y  +  IR RY+HSE+K+L
Sbjct: 428 EVRPVKGQIDDLLAEIRRHTAKGHKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEIKSL 487

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERI+I+R+LR G  +VLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL+Q  GRAA
Sbjct: 488 ERIQILRELRAGDVEVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 547

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+  V+ YAD +T+SI   +DET RRR  Q  +N+ H I P+S+++ + +V++   + 
Sbjct: 548 RNVDGFVVFYADVLTRSIMEVLDETARRRTVQQLYNETHGITPRSIRKSLDQVLNTTSVA 607

Query: 740 DA------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           DA            A + +   A   S + ++  A +  LR +M+ AA  + +E+AA +R
Sbjct: 608 DAEERYRRKRFGLGAKSGVQSAALLHSFTPEESYAMVAELRLEMNEAAIQMEYEKAAYLR 667

Query: 788 DEIKRL 793
           DEI RL
Sbjct: 668 DEIARL 673


>gi|9955068|pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
           Enzyme Uvrb From Thermus Thermophilus
          Length = 664

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/647 (52%), Positives = 449/647 (69%), Gaps = 11/647 (1%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P GDQP AIA L++ +   E+   LLG TG+GKT TMAKVIEA+ RPA+V+APNKILAAQ
Sbjct: 9   PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQ 68

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L +EF+  FP NAVEYF+SYYDYYQPEAYVP  D YIEK++SIN +I+R+RHS TRSLL 
Sbjct: 69  LAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLT 128

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           R D IVV+SVS IYG+G    Y    + ++ G    ++ LL  L++  Y+R DI +  G 
Sbjct: 129 RRDVIVVASVSAIYGLGDPREYRARNLVVERGKPYPREVLLERLLELGYQRNDIDLSPGR 188

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           FR  G+ +EIFP++ E    RV +FG+++E IS+ +P+TG+++R +    ++  +HY++P
Sbjct: 189 FRAKGEVLEIFPAY-ETEPIRVELFGDEVERISQVHPVTGERLRELPGFVLFPATHYLSP 247

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
                   +  KE  + R+   E+ G +L AQRL++R  YDLEML   G+C  +ENY+RY
Sbjct: 248 EGLEEILKEIEKELWE-RVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARY 306

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
            TG+ PGEPP TL +Y PED L+F+DESHVT+PQ+ GMYRGD+ RK TL +YGFRLPS +
Sbjct: 307 FTGKAPGEPPYTLLDYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSAL 366

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           DNRPLRFEE+       + VSATPG +EL    G +VEQIIRPTGL+DP V ++    Q+
Sbjct: 367 DNRPLRFEEFLERVSQVVFVSATPGPFELAHS-GRVVEQIIRPTGLLDPLVRVKPTENQI 425

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            D+ + I   A +G R L+TVLT RMAE+LT +L E  IR RY+H E+   +R  +IRDL
Sbjct: 426 LDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDL 485

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           RLG +D LVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAARN   +V L
Sbjct: 486 RLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWL 545

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           YAD +++++Q AI+ET RRR  Q  +N +H I P++V++++  VI P   E+A       
Sbjct: 546 YADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEAPL----- 600

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              +  LS +  +  +  L   M  AA+ L+FE AAR+RDEI+ L++
Sbjct: 601 ---EADLSGEDLRERIAELELAMWQAAEALDFERAARLRDEIRALEA 644


>gi|150403661|ref|YP_001330955.1| excinuclease ABC subunit B [Methanococcus maripaludis C7]
 gi|150034691|gb|ABR66804.1| excinuclease ABC, B subunit [Methanococcus maripaludis C7]
          Length = 646

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/660 (50%), Positives = 452/660 (68%), Gaps = 29/660 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI--HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           F+++ D+ P G QP AIA+L+  +  +S +  Q LLGVTGSGKTFT+A VIE +Q+P +V
Sbjct: 6   FKLKADFKPKGSQPDAIAELVNDLEKNSEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLV 65

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQLY+EFK+FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +I++M
Sbjct: 66  IAHNKTLAAQLYNEFKDFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQM 125

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R  AT ++L R D I+V+SVSCIYG+G+ + + +M  +LK G+ +++  ++  LV  QY+
Sbjct: 126 RLRATSAILSRRDVIIVASVSCIYGLGNPKLFKEMGFELKTGEKIKRSGIIEKLVDIQYE 185

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ ++ G FRV GD+++I P + +D+  RV MFG++I+ I E  P    K   +++  
Sbjct: 186 RNDMELVPGRFRVKGDTLDIIPGYQDDIV-RVEMFGDEIDRIYELDPKNMTKKHELDSFY 244

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y   H+V P      A+K I +EL   L  L+    +L++ RL+Q+  YD+EM+E TGS
Sbjct: 245 MYPAKHFVIPEEDKKNAIKSILKELDEWLPNLD----MLKSHRLKQKTLYDIEMIEETGS 300

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+   R  GEP   L +Y PED L+ +DESH TIPQI GMY+GD  RK +L 
Sbjct: 301 CKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSLI 360

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPLRFEE+       I VSATPG +EL+    + VEQIIRPTGL+DP 
Sbjct: 361 DYGFRLPSAYDNRPLRFEEFKKYMNNVIFVSATPGEYELDNSNQV-VEQIIRPTGLLDPE 419

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VEI+    QVED+  E     ++G R+L+T LTKR+AE+LTEYL +R ++ RY+HS++ T
Sbjct: 420 VEIKPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRQVKARYLHSDIDT 479

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR+LRLGKFD LVGINLLREGLDIPE G V ILDADKEGFLR+  SLIQTIGRA
Sbjct: 480 IERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRA 539

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS----VKEKIMEVID 734
           ARN NSKV+LYAD +T SI+ A+ ET RRR  Q ++N+ HNI P++    ++EK++++ D
Sbjct: 540 ARNANSKVVLYADKMTDSIKKAVSETERRRNLQKDYNEMHNITPKTIVKPIREKVVDISD 599

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              +  A   N+ I+ +       +                    FE+A +IRD I +LK
Sbjct: 600 IKHIPVADIPNVIIELEAEMYEAAEALE-----------------FEKAIKIRDNIAKLK 642


>gi|78186279|ref|YP_374322.1| excinuclease ABC subunit B [Chlorobium luteolum DSM 273]
 gi|78166181|gb|ABB23279.1| Excinuclease ABC subunit B [Chlorobium luteolum DSM 273]
          Length = 695

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/667 (49%), Positives = 452/667 (67%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + Y P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT++ VI    RP +VM+
Sbjct: 15  YRLVSPYEPAGDQPKAIKELTEGLKAGSPFQTLLGVTGSGKTFTISNVIAQAGRPVLVMS 74

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E + FFP NAVEYF+SYYD+YQPEAY+P  D YI K+  IN++I+R+R 
Sbjct: 75  HNKTLAAQLYGELRQFFPDNAVEYFISYYDFYQPEAYLPSIDKYIAKDLRINDEIERLRL 134

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT +LL  R D IVVSSVSCIYG+GS E +   I++L+ G   E+   L  L+   Y R
Sbjct: 135 KATSALLSGRRDVIVVSSVSCIYGLGSPEEWKSQIIELRTGMLKERNSFLQELIALHYVR 194

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+    G FRV GD I++ P++ + +A RV  FG++IE +  F   +G+ + +     I
Sbjct: 195 DDVDPGSGKFRVRGDIIDLIPAY-DQLALRVEFFGDEIESLQTFDMSSGEVLGSDPYAFI 253

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +V     L  AM  I+ EL  RL EL    R +EA RLE+R  YDLEM++  G C
Sbjct: 254 YPARQFVAGEEQLRQAMLRIENELAGRLNELRSAERFVEAGRLEERTRYDLEMMKELGYC 313

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+++GRNPGE P  L +Y PED L+ VDESHVT+PQI GMY GD  RK+ L E
Sbjct: 314 SGIENYSRHISGRNPGERPHCLLDYFPEDYLVVVDESHVTLPQIRGMYGGDRSRKSILVE 373

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRF+E+  + P  I +SATPG  ELE+  G++VEQ++RPTGL+DPPV
Sbjct: 374 HGFRLPSALDNRPLRFDEFMDMVPEVICISATPGDLELERSGGVVVEQVVRPTGLLDPPV 433

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + Q++++  EI      G ++L+  LTKRM+EDL ++L +  +R RY+HSE+K+L
Sbjct: 434 EVRPVKGQIDNLLMEIRRHTAGGHKVLVMTLTKRMSEDLHDFLRKAGVRSRYLHSEIKSL 493

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+R+LR G+ DVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL+Q  GRAA
Sbjct: 494 ERMQILRELRTGEIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 553

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV   V+LYADTIT+SI+  +DET RRRE Q  +N++H I P+S+ + + E++D   + 
Sbjct: 554 RNVEGFVVLYADTITRSIREVLDETARRREIQHRYNEEHGITPRSITKSVEEILDTTSVA 613

Query: 740 DAATT------NISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           DA          +    ++L      S++ ++G A    LR +M  AA  + +E+AA +R
Sbjct: 614 DAEERYRRRRFGLEPRPERLLSGVLESMTPEEGFAMAAELRAEMQQAALAMEYEKAAYLR 673

Query: 788 DEIKRLK 794
           DEI RL+
Sbjct: 674 DEIARLE 680


>gi|237750187|ref|ZP_04580667.1| excinuclease ABC subunit B [Helicobacter bilis ATCC 43879]
 gi|229374081|gb|EEO24472.1| excinuclease ABC subunit B [Helicobacter bilis ATCC 43879]
          Length = 660

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/660 (49%), Positives = 459/660 (69%), Gaps = 7/660 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + ++Y P+GDQP AI  L K I++ EK   L+GVTGSGKTF+MA +I+ +  P ++
Sbjct: 4   NLFNLTSNYKPAGDQPQAINFLCKQINNNEKYNTLIGVTGSGKTFSMANIIQNLNMPTLI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           M+ NK L AQLYSEFK+FFPHN VEYF+S++DYYQPEAY+PR D +IEK+SSIN++++R+
Sbjct: 64  MSHNKTLCAQLYSEFKSFFPHNHVEYFISHFDYYQPEAYIPRRDLFIEKDSSINDELERL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT SLL  +D IV++SVS  YG+G+   Y  MI +L++  + +QK LL+ LV+  Y 
Sbjct: 124 RLSATTSLLAYDDVIVIASVSANYGLGNPSEYLTMIEKLEVSKTYQQKRLLTKLVEMGYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +    RG+FRV G+ ++IFP++ E    R+  FG++IE I+    L    ++ +++  
Sbjct: 184 RNETSFERGSFRVKGEVVDIFPAYNEVEFIRIEFFGDEIERIAVLESLDNTLVKELDSYV 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +YA + ++     L  A+  I++EL+ RL   E E R+LE +RL+ R  +DLEM++  G 
Sbjct: 244 LYAANQFIVGENRLKNAIVEIEQELQERLKFYESENRMLEYERLKSRTEFDLEMIKENGI 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTL---FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
           C+ IENY+R+LTG+ PGE P +L   FEY  +  LL VDESHV++PQ  GMY GD  RK 
Sbjct: 304 CKGIENYARHLTGKKPGETPFSLLDYFEYKKKPYLLIVDESHVSLPQFGGMYAGDRSRKE 363

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L EYGFRLPS +DNRPL+F+E+   +   + VSATP   EL   +  + EQ+IRPTGL+
Sbjct: 364 VLVEYGFRLPSALDNRPLQFDEFINKKANFLFVSATPAELELSLSKDNVCEQLIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP  E+R +R QV+D+ +EI +  ++  R+L+T LTK+M+E+L +Y  +  I++ Y+HSE
Sbjct: 424 DPEFEVRDSRIQVKDLLEEIKVCVERKERVLITTLTKKMSEELAKYYAKEGIKIEYLHSE 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +  +ER  +IR+LRLG FDVLVGINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT+
Sbjct: 484 IDAIERNHLIRNLRLGVFDVLVGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTM 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNVN KVILYA+ ITKS++ A+D TT RR+KQ E NKKH I P SV   + E    
Sbjct: 544 GRAARNVNGKVILYAEKITKSMRKAMDTTTYRRKKQEEFNKKHGIIPTSVSRNVEE---E 600

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + LED+      +  +   +  K+ +  +K L+ +M  A+  L+FE A ++RDEI RL+S
Sbjct: 601 LRLEDSTKVYDKMSKKN-KIPAKEKENLIKDLKIKMLEASKRLDFEAAIQLRDEIARLRS 659


>gi|309803824|ref|ZP_07697909.1| excinuclease ABC, B subunit [Lactobacillus iners LactinV 11V1-d]
 gi|308164058|gb|EFO66320.1| excinuclease ABC, B subunit [Lactobacillus iners LactinV 11V1-d]
          Length = 624

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/623 (51%), Positives = 442/623 (70%), Gaps = 5/623 (0%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G TG+GKTFTMA +I  + +P +V++ NK L  QLY EFK FFP+NAVEYFVSYYDYYQP
Sbjct: 3   GATGTGKTFTMANLIAKLNKPTLVISHNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQP 62

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           EAYVP +DTYIEK+S+IN++ID++RH+ T +L++R D IVV+SVSCI+G+G    Y++ +
Sbjct: 63  EAYVPSSDTYIEKDSAINDEIDQLRHATTSALMQRKDVIVVASVSCIFGLGDPREYAKSV 122

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G+  E+  LL  LV  QY R D+ + RG FRV GD +EIFP+   +  +RV  FG
Sbjct: 123 ISLSVGEEYERDLLLRDLVNIQYDRNDLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFG 182

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I++I E   LTG+ +   E I ++  +H++T    +  A+  IK+EL +++   + +G
Sbjct: 183 DEIDQIVEANSLTGEILGKCEQISLFPATHFMTDSEQMKRAINDIKKELSLQVKAFDDKG 242

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           +LLEAQR++QR  YD+EM++  G    IENYSR++  R  GEPP TL ++ P+D L+ +D
Sbjct: 243 KLLEAQRIKQRTNYDIEMMQEVGYTNGIENYSRHMDNRKAGEPPYTLLDFFPDDFLILID 302

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           ESH T+P++  MY GD  RK TL +YGFRLPS +DNRPL+  E+       + VSATPG 
Sbjct: 303 ESHATMPELQAMYNGDRRRKQTLIDYGFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGD 362

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           +EL +    +VEQIIRPTGL+DP VE+R    Q++D+  EIN+  ++  R+ +T LTK+M
Sbjct: 363 YELSRTDK-VVEQIIRPTGLLDPIVEVRPINGQIDDLIAEINIRIRRKERVFVTTLTKKM 421

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           +EDLT+YL E  I+V+Y+HSE+KTLER++IIRDLRLGKFDVLVGINLLREG+D+PE  LV
Sbjct: 422 SEDLTDYLKELGIKVQYLHSEIKTLERMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLV 481

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
           AILDADKEGFLRS   LIQ +GRAARN N KVI+YAD IT S+Q AID T RRR  Q+  
Sbjct: 482 AILDADKEGFLRSTRPLIQMMGRAARNENGKVIMYADHITDSMQAAIDVTERRRHIQMLF 541

Query: 715 NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS---LSKKKGKAHLKSLRKQM 771
           N+KH+I P+++ + I ++I      D    +I+ D   L+   LS K+ +  + +L +QM
Sbjct: 542 NQKHHIIPKTIVKPIRDIISHTKDVDQKDKHIN-DFSDLNFDELSAKQKEQMIINLTEQM 600

Query: 772 HLAADNLNFEEAARIRDEIKRLK 794
            +AA  L+FE AA +RD I  LK
Sbjct: 601 KIAAQKLDFETAATLRDAIIDLK 623


>gi|207092372|ref|ZP_03240159.1| excinuclease ABC subunit B [Helicobacter pylori HPKX_438_AG0C1]
          Length = 658

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/664 (48%), Positives = 459/664 (69%), Gaps = 13/664 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA+
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +IR ++++
Sbjct: 181 SRNEVVFDRGSFRAMGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIRRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
           + L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  +  + EQIIRP
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRP 417

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP  E+R +  QV+D++DEI L   +G R+L+T LTK+MAE+L +Y  E  ++ RY
Sbjct: 418 TGLLDPKFEVRDSDKQVQDLFDEIKLVVARGERVLITTLTKKMAEELCKYYAEWGLKARY 477

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MHSE+  +ER  +IR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSL
Sbjct: 478 MHSEIDAIERNHLIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSL 537

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQT+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E
Sbjct: 538 IQTMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEE 597

Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            +   L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI 
Sbjct: 598 ELK--LRDD--EIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIA 653

Query: 792 RLKS 795
           +L++
Sbjct: 654 QLRT 657


>gi|325297929|ref|YP_004257846.1| UvrABC system protein B [Bacteroides salanitronis DSM 18170]
 gi|324317482|gb|ADY35373.1| UvrABC system protein B [Bacteroides salanitronis DSM 18170]
          Length = 674

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/667 (50%), Positives = 463/667 (69%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AIAQL +G+ +    Q LLGVTGSGKTFT+A VI+ + +P ++++
Sbjct: 3   FELVSDYQPTGDQPEAIAQLTEGVKNGVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFKNFFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN +ID++R 
Sbjct: 63  HNKTLAAQLYGEFKNFFPHNAVEYYVSYYDYYQPEAYIPSTDTYIEKDLAINGEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  RND +V+SS+SCIYG+G+   +   ++++K G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRNDVVVISSISCIYGMGNPADFYNNVIEIKKGKKLDRNVFLRKLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ + RG FRV GD+++IF ++  D A RV  + ++I+ I E  P++G +I   +  KI
Sbjct: 183 NDLELNRGNFRVKGDTVDIFLAYT-DSALRVMFWDDEIDAIEEIDPISGHRINEYDEYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T + ++  A+  I+++L  ++   E++G+  EA+RL +R+TYD+EML   G C
Sbjct: 242 YPANLFMTTKESVLRAIHQIEDDLTKQVAWFEEQGKNYEAKRLYERVTYDMEMLRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PG  P  L ++ P+D L+ +DESH ++PQI  MY GD  RK  L +
Sbjct: 302 SGIENYSRYFDGREPGTRPYCLLDFFPKDFLMVIDESHASVPQIRAMYGGDRARKENLIK 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L    I VSATP  +ELEQ +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFQELAKQIIYVSATPDDYELEQSEGIVVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR +  QV+D+ +EI    ++  RIL+T LTKRMAE+LTEYL +  IR  Y+HS+V+TL
Sbjct: 422 EIRPSMNQVDDLMEEIQQRIERQERILVTTLTKRMAEELTEYLLQHGIRCTYIHSDVETL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMEDLRQGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RNVN KVI+YAD IT S+Q  IDET RRR KQL +N+ H I P+ +K     ++      
Sbjct: 542 RNVNGKVIMYADRITDSMQQTIDETNRRRAKQLAYNEAHGITPKQIKRAYNNILLEQTES 601

Query: 734 -----DPILLEDA-ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                 P    DA A    + D     +SK++ +  +   RK M  AA  L+F EAA+ R
Sbjct: 602 ESSTSKPKAYTDAPAQMYAAADPIVQYMSKEQLQKSINRTRKLMQEAAKKLDFIEAAQYR 661

Query: 788 DEIKRLK 794
           DE+ RL+
Sbjct: 662 DELLRLE 668


>gi|317011311|gb|ADU85058.1| excinuclease ABC subunit B [Helicobacter pylori SouthAfrica7]
          Length = 658

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/662 (49%), Positives = 456/662 (68%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +P ++M
Sbjct: 3   LFDLKSPYPPAGDQPQAIDALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAKTNKPTLIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K G+    K  L  LV+  Y R
Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKAGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  +  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++VRYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FDVL+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + TT RR KQ E NK HNI P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFETTTYRRAKQEEFNKLHNITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D A    ++   ++  S++     +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDDEAKIAKALKKDKIPKSER--DKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|313124979|ref|YP_004035243.1| excinuclease ABC subunit b [Halogeometricum borinquense DSM 11551]
 gi|312291344|gb|ADQ65804.1| Excinuclease ABC subunit B [Halogeometricum borinquense DSM 11551]
          Length = 704

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/644 (51%), Positives = 439/644 (68%), Gaps = 7/644 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AI QL +G  +  + Q LLGVTGSGKT T+A  +E +Q+P +V+A
Sbjct: 22  FRVDAPFDPAGDQPEAIEQLARGFEAGMEKQTLLGVTGSGKTNTVAWTVEEIQKPTLVIA 81

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFKN FP NAVEYFVSYYDYYQPEAY+ +TDTYI+K+ SINE+IDR+RH
Sbjct: 82  HNKTLAAQLYEEFKNLFPDNAVEYFVSYYDYYQPEAYIEQTDTYIDKDMSINEEIDRLRH 141

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL R+D IVV+SVS IYG+G   +Y+ M ++L++GD +++ +LL  LV   Y+R 
Sbjct: 142 SATRSLLTRDDVIVVASVSAIYGLGDPANYTDMSLRLEVGDRMDRDDLLRRLVDLNYERN 201

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   +GTFRV GD++E+FP +    A R+  +G++I+ + +  PL G        + I+
Sbjct: 202 DVDFQQGTFRVRGDTVEVFPMYGR-YAVRIEFWGDEIDRMQKLDPLQGAVKSTEPAVLIH 260

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HY  P   L  A+  I+E ++ R+   E++G L+ AQR+E+R T+D+EML+ TG C 
Sbjct: 261 PAEHYSIPEDQLEQAISEIEELMEERVRYFERQGDLVAAQRIEERTTFDIEMLQETGYCS 320

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +++ R  G+ P TL +Y P+D L  +DESH T+PQI G + GD  RK +L E 
Sbjct: 321 GIENYSVHMSNRESGDAPYTLLDYFPDDFLTVIDESHQTLPQIRGQFAGDKARKDSLVEN 380

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+  DNRPL FEE+      T+ VSATPG +E E  +  I EQI+RPT LVDP VE
Sbjct: 381 GFRLPTAYDNRPLTFEEFEEKTDQTLYVSATPGDYEREHSEQ-IAEQIVRPTHLVDPKVE 439

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +  A  QV+D+ D I+   ++  R L+T LTKRMAEDLTEYL E  + V YMH E  TLE
Sbjct: 440 LADATGQVDDLLDRIDTRIERDERTLVTTLTKRMAEDLTEYLEEAGVDVAYMHDETDTLE 499

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E+IRDLRLG  DVLVGINLLREGLDIPE  LVAILDAD+EGFLRS T+LIQT+GRAAR
Sbjct: 500 RHELIRDLRLGHIDVLVGINLLREGLDIPEVSLVAILDADQEGFLRSTTTLIQTMGRAAR 559

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +VILYAD  T S++ AI+ET RRR  Q   N++H   P ++ + + E   P     
Sbjct: 560 NVNGEVILYADETTDSMEAAIEETQRRRAIQQAFNEEHGYEPTTIDKAVGETNLP----- 614

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
            + T+ +  A +    +   +  ++ L  +M  AADNL FE AA
Sbjct: 615 GSETSATRSASEQPTDEDDAREQIEYLEDRMQEAADNLEFELAA 658


>gi|332295640|ref|YP_004437563.1| UvrABC system protein B [Thermodesulfobium narugense DSM 14796]
 gi|332178743|gb|AEE14432.1| UvrABC system protein B [Thermodesulfobium narugense DSM 14796]
          Length = 684

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/656 (50%), Positives = 451/656 (68%), Gaps = 7/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQ  AI QL++G+    K Q LLG TG+GKTFT+A VI  +++P ++MA
Sbjct: 4   FKLFEPFKPAGDQERAIDQLVEGVEKGYKYQTLLGATGTGKTFTIANVINRVKKPTLIMA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL SE + FFP NAVEYF+SYYDYYQPEAY+P+ D YIEK++SIN++IDR RH
Sbjct: 64  PNKTLAAQLCSELRTFFPENAVEYFISYYDYYQPEAYIPQRDLYIEKDASINDEIDRYRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D IVV+SVSCIY +G  E Y      ++ GD + + + +  L+   Y+R 
Sbjct: 124 SATRSLLEREDVIVVASVSCIYSLGQPEEYKTNSFVIREGDKLSRDDFIDQLIYMLYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV  + ++  PS  ++ A+RV    + I  I++ +P++ + +  +E++ I+
Sbjct: 184 DYEFKRNNFRVNINVVDFIPS-FDEYAYRVRFDEDSIRSITKLHPVSLEPVEKIESLWIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH++     L  A+  I+ EL+ R+   E  G+++EA+R+EQR  YD+EML+T G C+
Sbjct: 243 PASHFILRDEKLKRAIDSIRVELEERIKYFESLGKVVEAKRIEQRTLYDIEMLQTIGYCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+ T R PGEPP TL +Y P+D L+ +DESH+++PQI GMYRGD  RK  L ++
Sbjct: 303 GVENYSRHFTFRKPGEPPITLLDYFPKDFLVILDESHLSVPQIRGMYRGDEARKKNLIDF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRFEE+       I +SATP S+E E    I VEQIIRPTG++DP VE
Sbjct: 363 GFRLPSAYDNRPLRFEEFIEKANQIIFMSATPASFEKENSSQI-VEQIIRPTGILDPIVE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   +QV D  +E    A++G R L+T LTKR+AEDL  YL +  I+  Y+HSE   +E
Sbjct: 422 VRDFESQVNDSINETRENAKRGFRTLITTLTKRLAEDLANYLIQEGIKAYYLHSEQDAIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++++ +LRLGK+DV+VGINLLREGLD+PE   V ILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 482 RLDVLHNLRLGKYDVVVGINLLREGLDLPEVTRVLILDADKEGFLRSSTSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV SKVILYA  IT+S++ AIDET RRR+ Q+E+N KHNI P S+ + I +++D     D
Sbjct: 542 NVESKVILYASKITESMREAIDETNRRRKIQMEYNLKHNITPTSISKPISDIVD----RD 597

Query: 741 AATTNISIDAQQLSLSKKKG-KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +   +I  + + +  S K   +   K +R +M   A    FEEAA+ RD +K LK+
Sbjct: 598 SEGNSIEEELRSIIKSNKNDLELTEKEIRTKMIEYAKEWKFEEAAKYRDLLKLLKN 653


>gi|288574819|ref|ZP_06393176.1| excinuclease ABC, B subunit [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570560|gb|EFC92117.1| excinuclease ABC, B subunit [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 669

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/650 (49%), Positives = 450/650 (69%), Gaps = 8/650 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++++ + PSGDQ  AI +L +G     K Q L+GVTGSGKTFT+A VI+ +QRP ++
Sbjct: 3   SLFKLKSPWAPSGDQGQAIDKLSEGFEKGLKYQTLMGVTGSGKTFTVANVIQKVQRPTLI 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQLYSEF++FFP NAV YFVSYYDYYQPEAYVP +DTYIEK++S+N++I+++
Sbjct: 63  LAHNKTLAAQLYSEFRDFFPDNAVHYFVSYYDYYQPEAYVPSSDTYIEKDASVNDRIEKL 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R +AT++L+ER D IVV+SVSCIYG+G  ++Y + ++   +G+  +++  L SL+   Y 
Sbjct: 123 RLAATKALIEREDVIVVASVSCIYGLGKKKTYEEAVIPFSVGEIWDRRTFLESLMAGYYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ +  G FRV GD +EIFP++  D   RV  F ++IE I E  P++G+ +   E   
Sbjct: 183 RNDVALSPGNFRVRGDVVEIFPAY-SDTCLRVVFFDDEIESIEETDPVSGKTVLRKERAA 241

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY   HYVT    +  AMK I EE++ ++     +G+ +EAQR+E R  YD+EML  TG 
Sbjct: 242 IYPAQHYVTTDEAVAGAMKAISEEMRQQVDLFTSQGKFIEAQRIESRTRYDMEMLVETGY 301

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRY+ GR+ GEPP TL ++ P+D LL VDESH+T+PQ+ GM+ GD  RK TL 
Sbjct: 302 CSGIENYSRYMDGRSEGEPPGTLIDFFPDDFLLVVDESHITLPQVRGMFNGDRARKETLV 361

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            +GFRLPSC+DNRPLR+EE++     T+ +SATPG WE    +  IVEQ+IRPTG+ DP 
Sbjct: 362 NHGFRLPSCLDNRPLRWEEFSRYMNRTLFLSATPGDWESSMSER-IVEQVIRPTGIPDPE 420

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V I  A  QV+D+ + +     +  R L+T LTK+ AEDL  YL +  ++ +Y+HS++ T
Sbjct: 421 VLIVPASGQVDDLLERLREVIGKDERALVTTLTKKGAEDLGGYLVDLGLKAKYIHSDLNT 480

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER ++I++LR G   VLVG+NLLREG+D+PE  LVAILDAD+EGFLRS  SLIQ +GRA
Sbjct: 481 FERADLIKELRSGGVSVLVGVNLLREGMDLPEVTLVAILDADREGFLRSYRSLIQVMGRA 540

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVNSKV+LYAD +T SI  A+DET RRRE Q+++N++HNI P++V  +I  ++   L+
Sbjct: 541 ARNVNSKVVLYADEMTDSISKAVDETVRRRELQIKYNEEHNIVPKTVYREIRTLLPEELM 600

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +DA         + L   ++      + L + M  A + L FE AA +RD
Sbjct: 601 KDALPKGPDKWEETLEGMEE------RDLERLMWEAVEKLQFERAATLRD 644


>gi|161528613|ref|YP_001582439.1| excinuclease ABC subunit B [Nitrosopumilus maritimus SCM1]
 gi|160339914|gb|ABX13001.1| excinuclease ABC, B subunit [Nitrosopumilus maritimus SCM1]
          Length = 650

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/660 (50%), Positives = 458/660 (69%), Gaps = 26/660 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           IT F++ ++Y P+GDQP AI QL+KG+  +  VQ LLGVTGSGKTF++A VI    +  +
Sbjct: 4   ITQFELASEYAPTGDQPQAIDQLVKGVKDK-TVQTLLGVTGSGKTFSVANVIARTGKNTL 62

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLYSE K FFP N V YFVSYYDYYQPE+Y+P+TDTYIEK++ +NE+I++
Sbjct: 63  VISHNKTLAAQLYSELKQFFPKNNVGYFVSYYDYYQPESYLPQTDTYIEKDTQVNEKIEK 122

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R  AT  LL     I+VS+VSCIY +G+ + +  + + +  GD +++ EL+  L+  +Y
Sbjct: 123 LRLEATAMLLSGEPTIIVSTVSCIYSLGNPQDWEDLAITVTAGDEIKRNELIRQLIDARY 182

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D  +  G FRV GD+I+I P++ ED+  R+SMFG+++E+IS    ++ ++ + +  +
Sbjct: 183 ERNDTEVAPGNFRVKGDTIDITPAYSEDLV-RISMFGDEVEKISVLDHVSLKEKKKINQM 241

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           KI+   HY+  +     A++ IK+ELK RL EL +    LE QRLE R  YDLEM+E  G
Sbjct: 242 KIFPAKHYLIAKDVRKKAVQSIKDELKKRLPELNE----LEKQRLEMRTKYDLEMIEELG 297

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+  GR  G+    L ++  +D LL +DESHVT+PQ+ GMY+GD  RK  L
Sbjct: 298 YCSGIENYSRHFDGRKAGQKAFCLMDFFGDDYLLVIDESHVTLPQLHGMYKGDHSRKKEL 357

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS  DNRPL+FEE+      TI VSATP  +E ++    I EQ++RPTGL+DP
Sbjct: 358 VTYGFRLPSAYDNRPLKFEEFEEYVRNTIFVSATPADYE-KKISSQIAEQLVRPTGLLDP 416

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VEIR  + Q++D+ +EIN       R+L+T LTKRMAEDL EYL ++ +RVRYMHSE++
Sbjct: 417 EVEIRPTKNQMDDLIEEINKKVANSERVLVTTLTKRMAEDLAEYLSKKQVRVRYMHSEIE 476

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            L+R E+IR LRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLR+ TSLIQT GR
Sbjct: 477 GLQRTELIRQLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNFTSLIQTFGR 536

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N  VI+YADT+T+S++ A++ET RRREKQ+++NK +NI P+++ + + E +    
Sbjct: 537 AARNENGNVIMYADTVTQSMKNAMNETKRRREKQMKYNKDNNITPKTIIKSVPEQV--TT 594

Query: 738 LEDA---ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           L+D+   +T +I+ D              +  L  QM   +++L+FE A   RD IKRL+
Sbjct: 595 LDDSKLKSTHDIATD--------------IIDLEAQMKKYSEDLDFERAIECRDRIKRLE 640


>gi|189462714|ref|ZP_03011499.1| hypothetical protein BACCOP_03411 [Bacteroides coprocola DSM 17136]
 gi|189430583|gb|EDU99567.1| hypothetical protein BACCOP_03411 [Bacteroides coprocola DSM 17136]
          Length = 674

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/669 (50%), Positives = 462/669 (69%), Gaps = 19/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AIAQL +G+ S    Q LLGVTGSGKTFT+A VI+ + +P ++++
Sbjct: 3   FELVSDYQPTGDQPEAIAQLTEGVKSGVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFKNFFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYGEFKNFFPHNAVEYYVSYYDYYQPEAYLPSTDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  RND IV+SSVSCIYG+G+   +   ++++K G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRNDVIVISSVSCIYGMGNPADFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEI---FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
            DI + RG FRV GD+++I   +  HL     RV  + ++I+ I E  P++G +  + + 
Sbjct: 183 NDIELNRGNFRVKGDTVDISLAYTDHL----LRVIFWDDEIDAIEEIDPVSGHRTGSFDE 238

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
            KIY  + ++T + +   A+  I+++L  ++   E++G+  EA+RL +R+TYD+EML   
Sbjct: 239 YKIYPANLFMTTKESTLKAIHQIEDDLTKQVAFFEEQGKPYEAKRLYERVTYDMEMLREL 298

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRY  GR PG  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  
Sbjct: 299 GHCSGIENYSRYFDGREPGSRPYCLLDFFPKDFLIVIDESHVSVPQIRAMYGGDRARKEN 358

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +G++VEQ+IRPTGL+D
Sbjct: 359 LVEYGFRLPAAMDNRPLKFEEFQEMAKQVIYVSATPADYELIQSEGVVVEQVIRPTGLLD 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R +  QV+D+ +EI    +   R+L+T LTKRMAE+LTEYL   NIR  Y+HSEV
Sbjct: 419 PIIEVRPSLNQVDDLMEEIQQRIELKERVLVTTLTKRMAEELTEYLLRHNIRCTYIHSEV 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT G
Sbjct: 479 DTLERVQIMEDLRQGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK----IMEV 732
           RAARNVN KVI+YAD IT S++  IDET RRREKQL +N+ H I PQ +K+     ++E 
Sbjct: 539 RAARNVNGKVIMYADKITDSMKQTIDETNRRREKQLAYNEAHGITPQQIKKNRNNALLET 598

Query: 733 IDPI-------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
                       +E+      + D     +SK++ +  ++  RK M  AA  LNF EAA+
Sbjct: 599 TGETSSKQPKAYVENTEHIQAAADPIVQYMSKEQLQKSMERTRKLMQEAAKKLNFIEAAQ 658

Query: 786 IRDEIKRLK 794
            RDE+ RL+
Sbjct: 659 YRDELLRLE 667


>gi|15612106|ref|NP_223758.1| excinuclease ABC subunit B [Helicobacter pylori J99]
 gi|8134789|sp|Q9ZKA0|UVRB_HELPJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|4155631|gb|AAD06620.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
          Length = 658

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/662 (49%), Positives = 457/662 (69%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA++M
Sbjct: 3   LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  YDLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAVKSIEDELALRLKFFKEQDKMLEYNRLKQRTEYDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  Q  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI     +G R+L+T LTK+MAE+L +Y  E  ++VRYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKSVVARGERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FDVL+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA   T+S+Q A + T+ RR KQ E NK HNI P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKTTQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDD--EIKIAKALKKDKMPKSEREKIIKELDKKMRERAKNLDFEEAMRLRDEIAQL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|325997968|gb|ADZ50176.1| Excinuclease ABC subunit B [Helicobacter pylori 2017]
          Length = 658

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/662 (49%), Positives = 457/662 (69%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA VI    +P ++M
Sbjct: 3   LFDLKSPYPPAGDQPKAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANVIAQTNKPTLIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  Q  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI     +G R+L+T LTK+MAE+L +Y  E  ++VRYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKSVVARGERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FDVL+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKIHNITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDD--EIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|210135272|ref|YP_002301711.1| excinuclease ABC subunit B [Helicobacter pylori P12]
 gi|210133240|gb|ACJ08231.1| excinuclease ABC subunit B [Helicobacter pylori P12]
          Length = 658

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/662 (49%), Positives = 459/662 (69%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA++M
Sbjct: 3   LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+ TTG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISTTGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  +  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++VRYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKIHNITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDD--EIRIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|307637782|gb|ADN80232.1| Excinuclease ABC subunitB [Helicobacter pylori 908]
          Length = 658

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/662 (49%), Positives = 457/662 (69%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA VI    +P ++M
Sbjct: 3   LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANVIAQTNKPTLIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  Q  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI     +G R+L+T LTK+MAE+L +Y  E  ++VRYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKSVVARGERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FDVL+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKIHNITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDD--EIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|323342415|ref|ZP_08082647.1| excision endonuclease subunit UvrB [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463527|gb|EFY08721.1| excision endonuclease subunit UvrB [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 663

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/656 (50%), Positives = 447/656 (68%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P GDQ  AI +L +GI   +K Q+LLG TG+GKTFT+++VI  + RP +V  
Sbjct: 9   FELVSKFDPKGDQVRAIGELTQGILDGKKEQVLLGATGTGKTFTVSQVIAKLNRPTLVFV 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+N VEYFVS +DYYQPEAY+P +DTYIEK S IN+++D +RH
Sbjct: 69  HNKTLAGQLYSEFKEFFPNNRVEYFVSNFDYYQPEAYLPGSDTYIEKSSMINQELDMLRH 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +A  S+L+R D I+V+SV+ IY       Y +M+  +++G  + +++L+  LVK+QY R 
Sbjct: 129 AAQNSVLQRRDTIIVASVASIYATADPSYYKEMLYVMRVGQEITREDLMRDLVKRQYIRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI    GTFRV GD IE+     +D+  RV  FG++I+ I E   +TG          I+
Sbjct: 189 DIEQSVGTFRVRGDVIEVVRGDRDDIVVRVEFFGDEIDRIVEVDRITGNVREGYLVYDIF 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y      +  A   I+ EL  RL   E E +L+E QRL+QR  YDLE L   G C 
Sbjct: 249 PANQYARDMDQIRPAADRIEAELHERLAYFESENKLVEHQRLKQRTEYDLEALREFGMCS 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS ++ GR+P + P TLF+Y P+D L  VDESHV++PQ+ GMY GD  RK TL EY
Sbjct: 309 GVENYSMHIDGRDPNQRPYTLFDYFPDDYLFIVDESHVSLPQVRGMYNGDQSRKRTLVEY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS M+NRP+ FEE+  ++  TI VSATPG +ELE+    +VEQIIRPTGL+DP +E
Sbjct: 369 GFRLPSAMNNRPMTFEEFTSVQKQTIYVSATPGDYELEKVNHQVVEQIIRPTGLLDPTIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+ ++ QV+D+ D+I    ++  R+L+T LT +MA+DLT YL E  I+V Y+H E KTLE
Sbjct: 429 IKKSQGQVDDLIDQILERRERDERVLITTLTVKMAQDLTNYLLETGIKVAYLHHETKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLGK+DV+VGINLLREGLD+PE  L+AILDADKEGFLRS  SL+Q +GRAAR
Sbjct: 489 RIEILRDLRLGKYDVVVGINLLREGLDLPEVSLIAILDADKEGFLRSYRSLVQIVGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YAD IT S++  IDET RRR+ Q+ +N+K+ I PQ++K++I +VI     E 
Sbjct: 549 NSNGHVIMYADRITDSMKKTIDETKRRRDIQIAYNEKNGITPQTIKKEIRDVIAG--KET 606

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           A  T+   + +     KK     ++ L K+M  AA  L+FE AA++RD +  +K+S
Sbjct: 607 AELTHRIRNNKGKRKDKKAVDELIQKLEKEMREAAALLDFERAAQLRDIVMEMKAS 662


>gi|108563478|ref|YP_627794.1| excinuclease ABC subunit B [Helicobacter pylori HPAG1]
 gi|122980471|sp|Q1CSF2|UVRB_HELPH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|107837251|gb|ABF85120.1| excinuclease ABC subunit B [Helicobacter pylori HPAG1]
          Length = 658

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/662 (48%), Positives = 458/662 (69%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA++M
Sbjct: 3   LFDLKSPYPPAGDQPQAIEALAKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKNFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  +  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++VRYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDD--EIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|149193929|ref|ZP_01871027.1| excinuclease ABC subunit B [Caminibacter mediatlanticus TB-2]
 gi|149135882|gb|EDM24360.1| excinuclease ABC subunit B [Caminibacter mediatlanticus TB-2]
          Length = 676

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/677 (49%), Positives = 458/677 (67%), Gaps = 28/677 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L   I    +   L+GVTGSGKTFTMA +IE +Q P +++ 
Sbjct: 2   FKLNSTYKPTGDQPKAIEKLTNCIKKGSRYNTLIGVTGSGKTFTMANIIEKLQIPTLILT 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SSIN +++R+R 
Sbjct: 62  HNKTLAAQLYSEFKEFFPQNHVEYFISYYDYYQPEAYLPRQDLFIEKDSSINAELERLRV 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLE +D IVV+SVS +YG+G+   Y +M+ ++ +GD + Q++ +  L+   Y R 
Sbjct: 122 SATASLLEYDDVIVVASVSALYGLGNPLEYKKMVAKIAVGDEINQRDFMLRLLSMGYTRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV G+ I+IFP++ ED   RV  FG++I+ I     +T +KI++++ I IY
Sbjct: 182 DKYFERGNFRVNGEVIDIFPTYFEDDVIRVEFFGDEIDRIYTIDYITNEKIQDIKEITIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A + ++     L  A+  I++EL  RL E E +G+++E QRL+QR  +DLEMLETTG+C+
Sbjct: 242 AANQFIVGANRLAEAINSIEKELLHRLREFEAQGKIIEYQRLKQRTEFDLEMLETTGTCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENY+R+LTG+ PGE P +L +Y     +  L+ VDESHV++PQ  GMY GD  RK  L
Sbjct: 302 GIENYARHLTGKKPGETPYSLLDYFEIKGKPYLVIVDESHVSLPQFRGMYNGDRARKEVL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP +F+E+    P  + VSATPG +ELE     I EQIIRPTGL+DP
Sbjct: 362 VEYGFRLPSALDNRPYKFDEFINKAPHYLFVSATPGEFELE-ISTCIAEQIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+  ++ QV  +YD+      +G R+L+T LTK+MAE+L +Y  E  ++V+YMHS++ 
Sbjct: 421 VVELYPSKDQVATLYDKAKEVISKGERVLVTTLTKKMAEELQKYYLELGLKVKYMHSDID 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER EIIR LR G+FD+L+GINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT+GR
Sbjct: 481 VVERNEIIRGLRSGEFDMLIGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMGR 540

Query: 678 AARNVNSKVILYA--------------------DTITKSIQLAIDETTRRREKQLEHNKK 717
           AARNVN +V+++A                    D ITKS+  AI  T +RR KQ E+NK 
Sbjct: 541 AARNVNGRVLMFADKITDPIIIDDNLEDLEKIKDKITKSMYNAIKTTIQRRIKQKEYNKL 600

Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
           HNI P+S   K    +D  L E+           +  +  ++ K  LK L++QM  AA N
Sbjct: 601 HNITPKSTIRK----LDKSLKEEGYEAISKELKNKNKIPPREKKEILKKLKQQMQEAAKN 656

Query: 778 LNFEEAARIRDEIKRLK 794
           L FE+AA +RD+IK LK
Sbjct: 657 LEFEKAAMLRDKIKELK 673


>gi|224373160|ref|YP_002607532.1| excinuclease ABC subunit B [Nautilia profundicola AmH]
 gi|223589676|gb|ACM93412.1| excinuclease ABC, B subunit [Nautilia profundicola AmH]
          Length = 676

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/677 (48%), Positives = 459/677 (67%), Gaps = 28/677 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L   I    +   L+GVTGSGKTFTMA +I+ +Q P +++ 
Sbjct: 2   FKLNSNFKPTGDQPQAIEKLSGCIKQGNRYNTLIGVTGSGKTFTMANIIQKLQIPTLILT 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SSIN +++R+R 
Sbjct: 62  HNKTLAAQLYSEFKEFFPQNHVEYFISYYDYYQPEAYLPRQDLFIEKDSSINAELERLRV 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLE +D IVV+SVS +YG+G+   Y +M+ ++ +GD + Q++ +  L+   Y R 
Sbjct: 122 SATASLLEYDDVIVVASVSALYGLGNPIEYKKMVAKIAVGDEINQRQFMMRLLSMGYTRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV G+ I+IFP++ ED   RV  FG++I+ I     +T +K+++++ I IY
Sbjct: 182 DKYFERGNFRVNGEVIDIFPTYFEDDVIRVEFFGDEIDRIYTIDYMTNEKLQDLKEITIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A + ++     L  A++ I++EL  RL E E++G+++E QRL+QR  +DLEMLETTG+C+
Sbjct: 242 AANQFIVGADRLAEAIQSIEKELGERLKEFEQQGKIIEHQRLKQRTEFDLEMLETTGTCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENYSR+LTG+ PGE P +L +Y     +  L+ VDESHV++PQ  GMY GD  RK  L
Sbjct: 302 GIENYSRHLTGKKPGETPYSLLDYFEIKGKPYLVIVDESHVSLPQFRGMYNGDRARKEVL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP +F+E+    P  + VSATPG +ELE     + EQIIRPTGL+DP
Sbjct: 362 VEYGFRLPSALDNRPYKFDEFINKAPHYLFVSATPGEYELE-ISTCVAEQIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+  ++ QV  ++D      ++G ++L+T LTK+MAE+L +Y  E  ++V+YMHS++ 
Sbjct: 421 IVELLPSQNQVATLFDRAKEVIEKGEKVLVTTLTKKMAEELQKYYLEMGLKVKYMHSDID 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER EIIR LR G+FD+L+GINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT+GR
Sbjct: 481 VVERNEIIRGLRSGEFDMLIGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMGR 540

Query: 678 AARNVNSKVILYA--------------------DTITKSIQLAIDETTRRREKQLEHNKK 717
           AARNVN +V+++A                    D IT S+  AI  T  RR KQ E+NKK
Sbjct: 541 AARNVNGRVLMFAGKIEEPVVLDDDLEVLEKIKDKITGSMYRAIKTTITRRIKQKEYNKK 600

Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
           H I P+S   K    +D  L E+           +  +  K+ KA +  LRK+M+ AA  
Sbjct: 601 HGIIPKSTIRK----LDKSLKEEGYEAIAKELKNKNKIPAKEKKAIIAKLRKEMNEAAKA 656

Query: 778 LNFEEAARIRDEIKRLK 794
           L FE+AA +RD+I+ LK
Sbjct: 657 LEFEKAAMLRDKIEELK 673


>gi|15645728|ref|NP_207905.1| excinuclease ABC subunit B [Helicobacter pylori 26695]
 gi|2499097|sp|P94846|UVRB_HELPY RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|2314265|gb|AAD08158.1| excinuclease ABC subunit B (uvrB) [Helicobacter pylori 26695]
          Length = 658

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/662 (48%), Positives = 457/662 (69%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA++M
Sbjct: 3   LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  +  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +G R+L+T LTK+MAE+L +Y  E  ++ RYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARGERVLITTLTKKMAEELCKYYAEWGLKARYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M     NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDD--EIRIAKALKKDKMPKSEREKIIKELDKKMRECTKNLDFEEAMRLRDEIAQL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|118475355|ref|YP_892046.1| excinuclease ABC subunit B [Campylobacter fetus subsp. fetus 82-40]
 gi|189037953|sp|A0RPB3|UVRB_CAMFF RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|118414581|gb|ABK83001.1| excinuclease ABC, B subunit [Campylobacter fetus subsp. fetus
           82-40]
          Length = 658

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/658 (50%), Positives = 457/658 (69%), Gaps = 9/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PS DQ  A+  ++  I S  K  +LLGVTGSGKTFTMA VI+ +  P ++M 
Sbjct: 4   FEISSKFKPSDDQEKAVTNIVDSIRSGNKFNVLLGVTGSGKTFTMANVIKRLNMPTLIMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SSINE+++R+R 
Sbjct: 64  HNKSLAAQLYSEFKGFFPKNHVEYFISYYDYYQPEAYIPRQDLFIEKDSSINEELERLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLE +D +VV+SVS  YG+G+   Y  M++ L +G S+ QKELL  LV   YKR 
Sbjct: 124 SATANLLEFDDVVVVASVSANYGLGNPAEYKGMVLLLSLGMSLNQKELLLKLVDMGYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD ++I+P++  D A R+  FG++++ +  F  L  ++ ++V    +Y
Sbjct: 184 DAYFDRGDFRVNGDVVDIYPAYFNDEAIRLEFFGDELDAMYHFDVLENKRTKDVSKFILY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A S ++     L  A+K I+ EL+ RL   EKE RL+E QRL+QR+ +DLEML +TGS +
Sbjct: 244 ATSQFIVGENRLKQAIKDIELELEDRLAFYEKENRLVEYQRLKQRVEFDLEMLSSTGSTK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+RYLTG+  GE P +LF+Y     +D L+ VDESHV++PQ  GMY GD  RK  L
Sbjct: 304 GVENYARYLTGQKAGETPYSLFDYFEVSGKDYLVIVDESHVSLPQFRGMYAGDRSRKEVL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL+ +E+   +   + VSATP  +E++  QG + EQI+RPTGL+DP
Sbjct: 364 VEYGFRLPSALDNRPLKLDEFIAKKANYLFVSATPNQYEIDLSQGHVYEQILRPTGLLDP 423

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+ S+  QVE ++D       +G R+L+T LTK+M+E+LT Y  E  I+V+YMHS++ 
Sbjct: 424 RIEVISSDNQVEVLFDRAKAVIARGERVLVTTLTKKMSEELTRYYQELGIKVKYMHSDID 483

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER E+IR LR G+FD+LVGINLLREGLD+PE  LVA+LDADKEGFLRS+TSLIQT+GR
Sbjct: 484 AVERNELIRGLRKGEFDMLVGINLLREGLDLPEVSLVAVLDADKEGFLRSRTSLIQTMGR 543

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN  VIL+A+ IT S++ AID T  RR+ Q ++NKK+ I P+S    + +      
Sbjct: 544 AARNVNGTVILFANKITNSMKEAIDTTEARRKYQGDYNKKYGITPRSASRNLEDS----- 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           L++    N+   A++L       +A + K LRKQM  AA NL FE+AA +RDEI +L+
Sbjct: 599 LKEEDLPNLYNKAKKLEKMPASERAKIVKELRKQMLEAAKNLEFEKAAALRDEIAKLR 656


>gi|208435009|ref|YP_002266675.1| excinuclease ABC subunit B [Helicobacter pylori G27]
 gi|208432938|gb|ACI27809.1| excinuclease ABC subunit B [Helicobacter pylori G27]
          Length = 663

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/662 (49%), Positives = 458/662 (69%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA++M
Sbjct: 8   LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 67

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 68  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 127

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 128 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 187

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 188 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 247

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 248 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 307

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 308 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 367

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  +  + EQIIRPTG
Sbjct: 368 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 424

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++VRYMH
Sbjct: 425 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMH 484

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FDVL+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 485 SEIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 544

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E +
Sbjct: 545 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 604

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 605 K--LRDD--EIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 660

Query: 794 KS 795
           ++
Sbjct: 661 RT 662


>gi|217076276|ref|YP_002333992.1| excinuclease ABC subunit B [Thermosipho africanus TCF52B]
 gi|226695570|sp|B7IEY7|UVRB_THEAB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|217036129|gb|ACJ74651.1| excinuclease ABC, B subunit [Thermosipho africanus TCF52B]
          Length = 661

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/654 (49%), Positives = 461/654 (70%), Gaps = 10/654 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ PSGDQP AI +L++G+    ++Q LLGVTGSGKTFTMAKV+E + +P ++++
Sbjct: 2   FKVYSDFSPSGDQPEAIKKLVEGLQKGYRIQTLLGVTGSGKTFTMAKVVEKVGKPTLIIS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEFK+FFP N VE+FVSYYDYYQPEAY+P  D YIEK + INE I++MR 
Sbjct: 62  PNKTLAAQLYSEFKSFFPENKVEFFVSYYDYYQPEAYIPTRDLYIEKNADINEVIEKMRI 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA +S++ R D IVV+SVS IY  G  + +S +   L +G  ++ +  L+ L +  Y+R+
Sbjct: 122 SAIKSIMTRKDVIVVASVSAIYNCGDPKDFSDLNFVLSVGQEIDLEGFLTHLARIGYERK 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +   + GTFRV GD IEI+P + +D   R+ +FG++I+ I  F PL  + +  ++ + IY
Sbjct: 182 EEVALGGTFRVKGDVIEIYPRY-QDEGIRIELFGDEIDSIYTFDPLNRKILEKLDRVVIY 240

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               ++T    +  A+K I +EL+ +L   +K+G+ LEA+RL+QR   D+E+L   G C 
Sbjct: 241 PTKEFITTEEKIQRAVKSILKELEEQLEYFKKQGKHLEAERLKQRTMNDIELLTALGYCS 300

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GRNPG+PP +L +Y  +D L+F+DESH+TIPQ+  MYRGDF RK  L +Y
Sbjct: 301 GIENYSRHFDGRNPGDPPYSLLDYFGDDYLVFIDESHITIPQLRAMYRGDFSRKKNLVDY 360

Query: 501 GFRLPSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           GFRLP   DNRPL+FEE WN ++   I VSATPG +E+   Q  +VEQIIRPTGLVDP V
Sbjct: 361 GFRLPCAYDNRPLKFEEFWNKVK-NVIFVSATPGDFEINNSQQ-VVEQIIRPTGLVDPEV 418

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + Q++D+ +EI    ++  R L+TVLTK+ AE L EYL E  I+  Y+HSE+ T+
Sbjct: 419 EVRPTQNQIDDLVNEIAKIRKRNERALVTVLTKKTAEKLAEYLIEMGIKALYIHSELDTI 478

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+E+++ LR G  +V+VG+NLLREGLD+PE  LVAILD+D EGFLRS+T+LIQ IGR A
Sbjct: 479 ERVEVLKKLRRGDVEVVVGVNLLREGLDLPEVSLVAILDSDTEGFLRSETTLIQIIGRVA 538

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL- 738
           RN+N KVI+YAD IT +++ AIDET RRR+ Q+E+NKKH I P+++ + + E I    + 
Sbjct: 539 RNINGKVIMYADKITPAMKKAIDETNRRRKIQIEYNKKHGITPKTIIKPLDEEIFKQFMT 598

Query: 739 --EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
             ++      +I   + SLS ++   ++  L ++M+ AA  L +E+AAR+RDE+
Sbjct: 599 DEDEEKEEIKTIFELKESLSIEE---YIALLEEEMYKAASELRYEDAARLRDEL 649


>gi|46199833|ref|YP_005500.1| excinuclease ABC subunit B [Thermus thermophilus HB27]
 gi|46197460|gb|AAS81873.1| excinuclease ABC subunit B [Thermus thermophilus HB27]
          Length = 668

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/647 (51%), Positives = 448/647 (69%), Gaps = 11/647 (1%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P GDQP AIA L++ +   E+   LLG TG+GKT TMAKVIEA+ RPA+V+APNKILAAQ
Sbjct: 12  PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQ 71

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L +EF+  FP NAVEYF+SYYDYYQPEAYVP  D YIEK++SIN +I+R+RHS TRSLL 
Sbjct: 72  LAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLT 131

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           R D IVV+SVS IYG+G    Y    + ++ G    ++ LL  L++  Y+R DI +  G 
Sbjct: 132 RRDVIVVASVSAIYGLGDPREYRARNLVVERGKPYPREALLERLLELGYQRNDIDLSPGR 191

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           FR  G+ +EIFP++ E    RV +FG+++E I + +P+TG+++R +    ++  +HY++P
Sbjct: 192 FRARGEVLEIFPAY-ETEPIRVELFGDEVERILQVHPVTGERLRELPGFVLFPATHYLSP 250

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
                   +  KE  + R+   E+ G +L A+RL++R  YDLEML   G+C  +ENY+RY
Sbjct: 251 EGLEEILKEIEKELWE-RVRYFEERGEVLYAERLKERTLYDLEMLRVMGTCPGVENYARY 309

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
            TG+ PGEPP TL +Y PED L+F+DESHVT+PQ+ GMYRGD+ RK TL +YGFRLPS +
Sbjct: 310 FTGKAPGEPPYTLLDYFPEDFLVFLDESHVTVPQLMGMYRGDYARKKTLVDYGFRLPSAL 369

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           DNRPLRFEE+       + VSATPG +EL    G +VEQIIRPTGL+DP V ++    Q+
Sbjct: 370 DNRPLRFEEFLERVSQVVFVSATPGPFELAHS-GRVVEQIIRPTGLLDPLVRVKPTENQI 428

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            D+ + I   A +G R L+TVLT RMAE+LT +L E  IR RY+H E+   ER  +IRDL
Sbjct: 429 LDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFERQALIRDL 488

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           RLG +D LVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAARN   +V L
Sbjct: 489 RLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWL 548

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           YAD +++++Q AI+ET RRR  Q  +N +H I P++V++++  VI P   E+A       
Sbjct: 549 YADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEAPL----- 603

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              +  LS +  +  +  L   M  AA+ L+FE AAR+RDEI+ L++
Sbjct: 604 ---EADLSGEDLRERIAELELAMWQAAEALDFERAARLRDEIRALEA 647


>gi|57242081|ref|ZP_00370021.1| excinuclease ABC, B subunit [Campylobacter upsaliensis RM3195]
 gi|57017273|gb|EAL54054.1| excinuclease ABC, B subunit [Campylobacter upsaliensis RM3195]
          Length = 656

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/660 (50%), Positives = 445/660 (67%), Gaps = 13/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+Q+++ PS DQ  AI  ++K I +  K Q LLGVTGSGKTFTMA VI+ +  P ++M+
Sbjct: 2   FQLQSEFKPSFDQEEAIMGIVKSIKAGHKYQTLLGVTGSGKTFTMANVIKELAMPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FFPHN +EYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R 
Sbjct: 62  HNKSLCAQLYSEFKGFFPHNHIEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL   D + ++SVS  YG+G+   Y  M++  +    + QK+LL  LV   YKR 
Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPSEYEGMVLIFEENMQISQKDLLKKLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD ++I+P++ ED   R+  FG+D+E I  +  L  +K ++++   +Y
Sbjct: 182 DNFFDRADFRVNGDLVDIYPAYYEDEVVRLEFFGDDLERIYHYNILENKKTKDLKRFILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S +      L  A+K IKEEL  RL   E E +L+E QRL+QR+ +DLEML++TG C+
Sbjct: 242 PTSQFSVGEARLKEAIKAIKEELNARLAYFENENKLVEYQRLKQRVEFDLEMLQSTGMCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 302 GVENYARHLTGLKEGQTPYTLFDYYAIKKRPFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +YGFRLPS +DNRPL F+E+   NC     + VSATP   ELE     I  QI+RPTGL
Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSGKNIFHQIMRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E++ +  QVE +YDE      +  RIL+TVLTK++AE+L+ Y  E  +RV+YMHS
Sbjct: 419 LDPIIELKDSTNQVEILYDEAKKVIARNERILVTVLTKKLAEELSRYYLELGLRVKYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER E+IR LR G+FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT
Sbjct: 479 DIDAIERNELIRGLRSGEFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KV+L+   ITKS+Q AID T+ RR+ Q E+NKKH I P SVK  + + + 
Sbjct: 539 MGRAARNVNGKVLLFCQKITKSMQEAIDTTSERRKLQEEYNKKHKITPTSVKRNLEQSLK 598

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               ED         A+   +   +    +K LRK+M  AA NL FE+AA +RDEI++ K
Sbjct: 599 N---EDLGEI-YRKGAKFEKMPANERAKFVKELRKEMLEAAKNLEFEKAAALRDEIRKFK 654


>gi|332297756|ref|YP_004439678.1| UvrABC system protein B [Treponema brennaborense DSM 12168]
 gi|332180859|gb|AEE16547.1| UvrABC system protein B [Treponema brennaborense DSM 12168]
          Length = 665

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/666 (49%), Positives = 452/666 (67%), Gaps = 21/666 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y PSGDQP AI +L++G    +  Q L GVTGSGKTFTMAK+IE +QRP ++++
Sbjct: 4   FKVVAPYEPSGDQPQAIERLVEGFLRGDTYQTLKGVTGSGKTFTMAKIIEKVQRPTLIIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L+AQLY EFK+FFP NAVEYFVSYYDYYQPEAYVP  D YIEK++SIN++IDRMR 
Sbjct: 64  HNKTLSAQLYREFKSFFPDNAVEYFVSYYDYYQPEAYVPARDLYIEKDASINDEIDRMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT SL+ER D IVV++VSCIYG+G  E Y  M + ++ G +++       LV  QY+R 
Sbjct: 124 AATYSLMERRDVIVVATVSCIYGLGMPELYKDMRIHIEKGQTLDPAAFGRQLVTLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLE-DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           D  + RG FR+ GD +E++P+++E D A+R+ +   +I  I  F  ++G+ I  ++   I
Sbjct: 184 DAVLDRGRFRIRGDVLEVYPAYMETDEAYRIELDWEEIVRIRRFNTISGEIIEELDETTI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y   H+V P   L +A   IK E++ R+  L++ G++LEA+RL+ R +YDLEML   G C
Sbjct: 244 YPAKHFVVPPEMLKSATDRIKSEMEDRVQFLQQTGKILEAERLKTRTSYDLEMLSEMGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS  ++GR  GEPP TL  Y P D+L  +DE+HVT+ QI  MY GD  RK  L +
Sbjct: 304 PGIENYSGPISGRRSGEPPATLLHYFPSDTLCLIDEAHVTVSQIGAMYEGDRSRKQNLID 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL++ E+  +   TI V+ATP   E+++    +VEQ+IRPTGL+DP V
Sbjct: 364 FGFRLPSALDNRPLKYAEFESMISQTIYVTATPREQEIKRSTQ-VVEQLIRPTGLLDPIV 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q+ED+Y EI     +G R LL  LTK+MAEDLTEYL    ++VRY+HSEV+T+
Sbjct: 423 EVRPSEGQMEDIYGEIKERIARGERCLLLTLTKKMAEDLTEYLDGLGLKVRYIHSEVETI 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++ LR G+FDVL+GINLLREGLD+PE   +AILDADK GFLRS TSLIQ IGRAA
Sbjct: 483 ERVEILKGLRSGEFDVLIGINLLREGLDLPEVSFIAILDADKIGFLRSATSLIQIIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RN N  V++YAD  + +++ AI+ET  RRE Q  +N  H I P +V + + +++      
Sbjct: 543 RNQNGMVVMYADRESDAMKAAIEETVHRREVQEAYNTAHGITPATVSKAVADILVRQNED 602

Query: 734 --DPILLEDAA---TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
               +  E A    + N+ + AQ+  L        +K+L KQM   AD L FE+AA +RD
Sbjct: 603 KKAAVETETAVLRKSVNLFVPAQRRKL--------IKALEKQMSEFADCLEFEQAAAVRD 654

Query: 789 EIKRLK 794
           EI  +K
Sbjct: 655 EIAAIK 660


>gi|317012887|gb|ADU83495.1| excinuclease ABC subunit B [Helicobacter pylori Lithuania75]
          Length = 658

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/662 (48%), Positives = 458/662 (69%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA++M
Sbjct: 3   LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  +  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++VRYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDD--EIRIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|196230715|ref|ZP_03129576.1| excinuclease ABC, B subunit [Chthoniobacter flavus Ellin428]
 gi|196225056|gb|EDY19565.1| excinuclease ABC, B subunit [Chthoniobacter flavus Ellin428]
          Length = 733

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/714 (47%), Positives = 462/714 (64%), Gaps = 66/714 (9%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P GDQ  AIA+L K I +  + Q LLGVTGSGKTFT A VI+ +++P +V++
Sbjct: 3   FQLASRYQPKGDQAQAIAKLTKSIEAGNRHQTLLGVTGSGKTFTAANVIQNVEKPTLVIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSY+DYYQPEAY+PRTDTYIEK+SSINE+I+R+R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPENAVEYFVSYFDYYQPEAYIPRTDTYIEKDSSINEEIERLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T SLL R D IV++SVSCIYG+GS E Y  M++ +K+G  + ++  LS LV   Y+R 
Sbjct: 123 STTSSLLSRRDVIVIASVSCIYGLGSPEDYMNMLLTIKVGQQISREAALSKLVDMLYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DIG  RG FRV GD++E+ P++L++ A R+  FG++++ I+ F PLTG     +  I +Y
Sbjct: 183 DIGFNRGKFRVRGDTVEVHPANLDEEAIRIEFFGDEVDRITRFDPLTGHGHEQLTMITLY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               +VTP   +  AM  IKEEL  R+I  EK G LLEAQR++ R  YDLEM++  G C 
Sbjct: 243 PAKQFVTPADKMRRAMGTIKEELAERIIHFEKHGHLLEAQRIKMRTEYDLEMMQEMGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PG  P TL ++ P+D LL +DESH TIPQ+ GMY GD  RK+ L +Y
Sbjct: 303 GIENYSRHLSGRPPGSRPFTLLDFFPKDYLLVIDESHATIPQVGGMYEGDKSRKSVLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL---------------EQCQGIIV 545
           GFRLPS +DNRPLRF E+  +    + +SATP  +E+               +Q + +  
Sbjct: 363 GFRLPSALDNRPLRFPEFMEMTGQALYISATPAEFEIKNSIVGNTSYIPHKRQQSEQVGK 422

Query: 546 EQII-----------RPTGLVDPPVE----------------------------IRSART 566
           E+ +              G  + PVE                            IR  + 
Sbjct: 423 EEDVPFARGRCVAGAAALGAPNTPVEEFDVHTPGRPLVVEQIIRPTGLLDPRITIRPLKG 482

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q+++  +      +   R+L+T LTKR AEDL++YL +  ++VRY+HS++ T+ER+EI+R
Sbjct: 483 QIDETLELCRQRIEVKERVLITTLTKRTAEDLSDYLRDVGLKVRYLHSDIDTIERVEILR 542

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
            LR  +FD+LVGINLLREGLD+PE  LV ILDADKEG+LRS+TSLIQT GRAAR+VN +V
Sbjct: 543 ALRAAEFDILVGINLLREGLDLPEVSLVCILDADKEGYLRSQTSLIQTAGRAARHVNGEV 602

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL----LEDAA 742
            L+ADT+TKS++  +  T  RR +Q+ +N+KH I P+SV+  + E +  IL    LE++ 
Sbjct: 603 YLFADTVTKSMEALLAITEYRRARQIAYNEKHGITPRSVQRAVQESLHTILKGRELEESV 662

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 D    SL++      L+ L ++M +AA+NL +E+AA +RD+I  LK+ 
Sbjct: 663 VREGGGD---FSLTET-----LRELEQEMMIAANNLEYEKAALLRDQIAELKAG 708


>gi|320451473|ref|YP_004203569.1| excinuclease ABC subunit B [Thermus scotoductus SA-01]
 gi|320151642|gb|ADW23020.1| excinuclease ABC, subunit B [Thermus scotoductus SA-01]
          Length = 666

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/654 (52%), Positives = 456/654 (69%), Gaps = 13/654 (1%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P GDQP AI +LL+ +   E+   LLG TG+GKT TMAKVIEA+ RPA+V+APNKILAAQ
Sbjct: 10  PKGDQPKAIRELLEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQ 69

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L +EF+  FP NAVEYF+SYYDYYQPEAYVP  D YIEK++SIN +I+R+RHS TRSLL 
Sbjct: 70  LAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLT 129

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           R D +VV+SVS IYG+G    Y    + ++ G    ++ LL  L++  Y R D+ +  G 
Sbjct: 130 RKDVVVVASVSAIYGLGDPREYRARNLVVERGAVYPREALLERLLELGYTRNDLDLSPGR 189

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           FR  G+ +EIFP++ E    RV +FG+++E I + +P+TG+++R +    ++  +HY++P
Sbjct: 190 FRARGEVLEIFPAY-ETEPLRVELFGDEVERILQVHPITGERLRELPGFVLFPATHYLSP 248

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
              L   ++ I++EL  R+   E+ G +L AQRL++R  YDLEML   G+C  +ENY+RY
Sbjct: 249 E-GLEGVLQEIEKELWERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARY 307

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
            TG+ PGEPP TL +Y PED L+F+DESHVT+PQ+ GMYRGD+ RK TL +YGFRLPS +
Sbjct: 308 FTGKAPGEPPYTLLDYFPEDFLVFLDESHVTVPQLMGMYRGDYARKKTLVDYGFRLPSAL 367

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           DNRPLRFEE+    P  + VSATPG +ELE   G +VEQIIRPTGL+DP V ++    Q+
Sbjct: 368 DNRPLRFEEFLERVPQVVFVSATPGPFELEHS-GALVEQIIRPTGLLDPLVVVKPTENQI 426

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            D+ + I   AQ+G R L+TVLT RMAE+LT +L E  +R RYMH E+   ER  +IRDL
Sbjct: 427 LDLMEGIRERAQRGERTLVTVLTVRMAEELTAFLQEHGVRARYMHHELDAFERQALIRDL 486

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           RLG FD LVGINLLREGLDIPE  LVAILDADK GFLRS+ SLIQTIGRAARN   +V L
Sbjct: 487 RLGHFDALVGINLLREGLDIPEVSLVAILDADKTGFLRSERSLIQTIGRAARNAKGEVWL 546

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           YADTI+++++ AI ET RRR  Q  +N++H I P++V++++  +I P    + A    + 
Sbjct: 547 YADTISEAMERAIRETNRRRALQEAYNQEHGIVPETVRKEVRAIIRPEEYGEKAPVE-AW 605

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGL 802
           + + L       K  +  L   M  AA+ L+FE AAR+RDE++ L++    QGL
Sbjct: 606 EGEDL-------KERIAELELAMWQAAEALDFERAARLRDELRALEAR--LQGL 650


>gi|289581736|ref|YP_003480202.1| excinuclease ABC subunit B [Natrialba magadii ATCC 43099]
 gi|289531289|gb|ADD05640.1| excinuclease ABC, B subunit [Natrialba magadii ATCC 43099]
          Length = 686

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/654 (50%), Positives = 446/654 (68%), Gaps = 7/654 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AI QL  G +S  + Q LLGVTGSGKT T++  IE +Q+P +V+A
Sbjct: 19  FEVDAPFEPAGDQPEAIEQLADGFNSGMEKQTLLGVTGSGKTNTVSWTIEEVQKPTLVIA 78

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+N FP NAVEYFVSYYDYYQPEAYV +TDTYI+K++SIN++IDR+RH
Sbjct: 79  HNKTLAAQLYEEFRNLFPENAVEYFVSYYDYYQPEAYVEQTDTYIDKDASINDEIDRLRH 138

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL R D IVV+SVS IYG+G   +Y  M ++L++G+ V + +LL  LV   Y+R 
Sbjct: 139 SATRSLLTREDVIVVASVSAIYGLGDPRNYIDMSLRLEVGEEVGRDDLLKQLVDLNYERN 198

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   +GTFRV GD++EI+P +    A RV ++G++I+ + +  PL G    + + + ++
Sbjct: 199 DVDFTQGTFRVRGDTVEIYPMYGR-YAVRVELWGDEIDRMVKVDPLEGTTQGDQQAVLVH 257

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HY  P P L  AM  I+++L  R+   ++ G ++  QR+E+R T+DLEM++ TG C 
Sbjct: 258 PAEHYSIPEPKLERAMDEIRDDLDSRISYFDRTGDMIAGQRIEERTTFDLEMMQETGYCS 317

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS YL+ R  GE P TL +Y P+D L  +DESH TIPQI G Y GD  RK +L E 
Sbjct: 318 GIENYSVYLSDRESGEAPYTLLDYFPDDFLTVIDESHQTIPQIRGQYAGDKSRKDSLVEN 377

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+  DNRPL FEE+      T+ VSATP  +E E  +  I EQI+RPT LVDP + 
Sbjct: 378 GFRLPTAYDNRPLTFEEFEEKTDQTLYVSATPSDYEREHSER-IAEQIVRPTHLVDPEIS 436

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +  A  Q++D+ D I+    +  R L+T LTKRMAEDLTEYL E  + V YMH E  TLE
Sbjct: 437 VSPASGQIDDLMDRIDDRIDRDERTLVTTLTKRMAEDLTEYLEEAGVNVEYMHDETDTLE 496

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR LRLG+ DVLVGINLLREGLDIPE  LVAILDAD+EGFLRS+T+L+QT+GRAAR
Sbjct: 497 RHEIIRSLRLGEIDVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTLVQTMGRAAR 556

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +VILYAD  + +++ AI+ET RRR  Q E+N++H + P ++ + + E   P     
Sbjct: 557 NVNGEVILYADDPSNAMKSAIEETKRRRRIQQEYNEEHGLEPTTIDKAVSETNLP----G 612

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + T    +  ++L   + +   ++  L  +M  AA NL FE AA IRD I+ ++
Sbjct: 613 SKTDTSQVSGRELE-DEDEAARYIDELETRMDEAASNLEFELAADIRDRIREVR 665


>gi|167755025|ref|ZP_02427152.1| hypothetical protein CLORAM_00529 [Clostridium ramosum DSM 1402]
 gi|237735250|ref|ZP_04565731.1| excinuclease ABC subunit B [Mollicutes bacterium D7]
 gi|167705075|gb|EDS19654.1| hypothetical protein CLORAM_00529 [Clostridium ramosum DSM 1402]
 gi|229380995|gb|EEO31086.1| excinuclease ABC subunit B [Coprobacillus sp. D7]
          Length = 657

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/656 (52%), Positives = 452/656 (68%), Gaps = 5/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P GDQ  AI QL+ GI   +K Q+LLG TG+GKTFT++ VI A+ +P +V+A
Sbjct: 4   FKLVSPFSPMGDQEEAIKQLVAGIKEGKKEQVLLGGTGTGKTFTVSNVIAAVNKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFP N VEYF+S +D+YQPEAY+P  D YI+K +  N +I+ +R 
Sbjct: 64  HNKTLAGQLYSELKEFFPENRVEYFISNFDFYQPEAYIPGRDLYIDKNAKTNYEIEMLRS 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +A  SL+ER D IVV+SV+ IYG+G+ E Y +MI  L++   +++KELL+ LV +QY+R 
Sbjct: 124 AAMNSLIEREDVIVVASVASIYGLGNPEQYKEMIFSLRVDQDIDRKELLTYLVDRQYQRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   +GTFRV GD IEI P H E    R+ +FG+ +E ISE  PLTG  +    T  IY
Sbjct: 184 DIEQTKGTFRVRGDVIEIVPGHTESWLIRIELFGDTVERISEVDPLTGHVLGVYNTYTIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               YVT +  +  A   I  EL+ RL   + E +LLE +RLEQR  +D+EML   G C 
Sbjct: 244 PAYGYVTKKEQILKACDTITAELENRLETFKAETKLLEHERLEQRTRHDVEMLREVGMCP 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR+ G+ P TL +Y P+D L+ VDESHV +PQ+ GMY GD  RK TL EY
Sbjct: 304 GIENYSRHIDGRDEGQRPYTLIDYFPKDFLMIVDESHVMLPQVRGMYNGDRSRKETLVEY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  +    I VSATPG +ELE  +  +VEQIIRPTGL+DP +E
Sbjct: 364 GFRLPSALDNRPLRFEEFEKIINQVIYVSATPGDYELEHVENKVVEQIIRPTGLLDPVIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI +   +  R+L+T LTKRMAEDL+ YL E  I+V Y+HS+ KTLE
Sbjct: 424 VRPTKDQIDDIISEIKIRQDRNERVLITTLTKRMAEDLSAYLKELGIKVAYLHSDTKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RDLRLGK+DVLVGINLLREGLD+PE  LV ILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 484 RTEILRDLRLGKYDVLVGINLLREGLDLPEVSLVCILDADKEGFLRSNRSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-DPILLE 739
           N N +VI+Y D IT S+  AI+ET RRR+ Q  +NK+HNI P ++ ++I + I    +++
Sbjct: 544 NSNGEVIMYGDKITDSMAYAIEETNRRRKIQDAYNKEHNITPTTIHKEIRDAIRGQEVID 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           DAA    S+  +    SKK  +  ++ L KQM  AA  L+FE A  +RD I  L+ 
Sbjct: 604 DAA----SLVKKGKKASKKDKQVMIQELEKQMKDAAKVLDFERAMELRDIIMELQG 655


>gi|257460140|ref|ZP_05625244.1| excinuclease ABC, B subunit [Campylobacter gracilis RM3268]
 gi|257442581|gb|EEV17720.1| excinuclease ABC, B subunit [Campylobacter gracilis RM3268]
          Length = 658

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/658 (50%), Positives = 448/658 (68%), Gaps = 9/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ + PS DQ  AI  ++ G  S  K Q LLGVTGSGKTFTMA +I+ +  PA+VM 
Sbjct: 4   FKIESKFSPSEDQEKAIEGIVAGFQSGNKYQTLLGVTGSGKTFTMANIIKRLGIPALVMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+S +N++++R+R 
Sbjct: 64  HNKSLAAQLYSEFKGFFPQNHVEYFISYYDYYQPEAYIPRQDLFIEKDSDVNQELERLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL  +D I V+SVS  YG+G    Y  M++  +IG     K LL  LV   YKR 
Sbjct: 124 SATASLLSFDDVITVASVSANYGLGDPAEYKGMVLFFEIGSKFSTKFLLRKLVDMGYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD I+I+P++  D A+R+  FG++IE +     L  +K ++V+   +Y
Sbjct: 184 DDFFDRGNFRVNGDVIDIYPAYFNDEAFRIEFFGDEIEAMYHLDVLENKKTQSVKKFILY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S ++     L + +K I+EEL+ RL   E  G+L+EAQRL+ R+ +DLEML  TG C+
Sbjct: 244 PTSQFIVGEQRLKSTIKGIEEELEQRLKFFEDAGKLVEAQRLKGRVEFDLEMLGATGMCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENY+RYLTG+ PGE P +LF+Y     +D L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 304 GIENYARYLTGQKPGETPYSLFDYYESKGKDYLVIVDESHVSLPQFRGMFAGDRSRKETL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL F+E+   +   + VSATP  +EL+  +G + EQI+RPTGL+DP
Sbjct: 364 VEYGFRLPSALDNRPLMFDEFINKKAKFLFVSATPNDYELQLSRGAVYEQILRPTGLLDP 423

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++ +  QVE ++D       +G RIL+TVLTK+MAE+L++Y  E  ++V+YMHS++ 
Sbjct: 424 QIILKDSDNQVEILHDMAKEVIARGERILVTVLTKKMAEELSKYYLELGLKVKYMHSDID 483

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER E+IR LR G++D+L+GINLLREGLD+PE  L+AI+DADKEGFLRS+TSLIQT+GR
Sbjct: 484 AIERNELIRGLRSGEYDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSRTSLIQTMGR 543

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ +V+++   IT S+Q AID T +RR+ Q E+N+ H I P S    I E +    
Sbjct: 544 AARNVHGQVVMFCKKITASMQEAIDITQKRRKFQDEYNRAHGITPHSASRNIEESLK--- 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +ED   T I      L       +A + K LRKQM  AA  L FE+AA +RDEI +L+
Sbjct: 601 IEDG--TEILRKGANLEKMPAAERAKIVKELRKQMLEAAAALEFEKAAALRDEIAKLR 656


>gi|160902951|ref|YP_001568532.1| excinuclease ABC subunit B [Petrotoga mobilis SJ95]
 gi|160360595|gb|ABX32209.1| excinuclease ABC, B subunit [Petrotoga mobilis SJ95]
          Length = 658

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/654 (50%), Positives = 452/654 (69%), Gaps = 5/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++++Y P GDQP AI +L  GI+   + Q LLGVTGSGKT+TMA +I  + RP +V++
Sbjct: 2   FKLRSEYEPQGDQPKAIEELSSGINKNYRFQTLLGVTGSGKTYTMANIIANVNRPTLVLS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNKILA QLY+EFK FFP N VE+F+SYYDYYQPEAY+P  D YIEK + IN+ + +MR 
Sbjct: 62  PNKILAVQLYNEFKEFFPENRVEFFISYYDYYQPEAYIPSRDIYIEKNADINDILVKMRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S  +S+L R D IVVSSVS IY  G+ + +S + + L++ +   ++E+L  L K QY RQ
Sbjct: 122 STLKSVLTRRDVIVVSSVSAIYASGNPDDFSNINLYLRVNEEYSRREILIKLGKMQYTRQ 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +   + GTFR  GD +EIFP + ED   RV+ F N++E+I          I   + I IY
Sbjct: 182 EKDYLGGTFRWKGDVLEIFPPY-EDFGIRVTFFDNEVEKIEALDVFNRTIIEEFDKITIY 240

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               +VT +  + +A++ I  +L+ ++   ++EG+LLEAQR+EQR+  DLE L+T G C+
Sbjct: 241 PAKEFVTSQEKIFSAIERINADLQTQIEYFKREGKLLEAQRIEQRVKQDLEFLQTLGYCK 300

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY  GRNPG+ P TL +Y  ED + F+DESH+ +PQ+  M+RGD+ RK  L +Y
Sbjct: 301 GIENYSRYFDGRNPGDSPWTLLDYFDEDFVTFIDESHIAVPQLRAMFRGDYARKKNLVDY 360

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       I VSATPG +E+E     IVEQIIRPTGLVDP VE
Sbjct: 361 GFRLPSALDNRPLRFEEFLEKTNQIIFVSATPGPFEME-VSDQIVEQIIRPTGLVDPKVE 419

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++S   QV+D   E+    ++G R L  VLTK+ AE L+++L    I+  Y+HSE+ T+E
Sbjct: 420 VKSTEGQVDDFISEVKEVVERGERALAVVLTKKDAEILSDHLNLMGIKSLYLHSELDTIE 479

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E+I+ +R G+ +V+VG+NLLREGLD+PE  LVAI+DAD+EGFLRS+T+LIQTIGRAAR
Sbjct: 480 RSEVIKKIRNGEIEVVVGVNLLREGLDLPEVSLVAIMDADREGFLRSETTLIQTIGRAAR 539

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  KV+LYAD IT++++ AIDET RRRE Q+++N  +NI P+S+ +K+ E +     ++
Sbjct: 540 NVQGKVLLYADRITEAMKTAIDETNRRREIQIQYNIDNNITPKSIIKKLPEDMFAPFKDN 599

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  I A + +LS      +L  L ++M+ AA  L +EEAAR RDEIKR+K
Sbjct: 600 EVKEEDYIFAVEENLSPDD---YLAMLEEKMYEAASELKYEEAARYRDEIKRIK 650


>gi|298372807|ref|ZP_06982797.1| excinuclease ABC subunit B [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275711|gb|EFI17262.1| excinuclease ABC subunit B [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 711

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/669 (48%), Positives = 445/669 (66%), Gaps = 19/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP AI +L + +      Q LLGVTGSGKTFTMA VI  + RP ++++
Sbjct: 42  FNLVSAYQPSGDQPQAIRELTEAVDKGVDYQTLLGVTGSGKTFTMANVIANVNRPTLIIS 101

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +IN +I+++R 
Sbjct: 102 HNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYLPATDTYIEKDLAINSEIEKLRL 161

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT  LL  RND ++VSSVSC+YGIG+ E + +  + L +G ++ + + L SLV   Y R
Sbjct: 162 SATSQLLSGRNDIVIVSSVSCLYGIGNPEDFKKNTIPLAVGQNILRDDFLRSLVVANYSR 221

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +I + RG FRV GD+++IFP++  D   RV  + NDI+ +    P TGQ I   ++  +
Sbjct: 222 NEIDLNRGNFRVKGDTVDIFPAY-ADFILRVIFWDNDIDSLETLDPTTGQTIEVFDSFNL 280

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + + T +  +N A+  I  +L  ++   ++  +  EA+RL++R+TYD+EM+   G C
Sbjct: 281 YPATIFTTTQERINHALDLIALDLGKQVEFFKENNKPYEAKRLQERVTYDIEMIREVGYC 340

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +ENYSRY   R PG  P  +F+Y P+D L+FVDESHVTIPQI GM+ GD+ RK  L E
Sbjct: 341 SGVENYSRYFDNRPPGSRPFCIFDYFPKDFLVFVDESHVTIPQIHGMFGGDYSRKKNLVE 400

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL+FEEW  L P  I VSATP  +EL +  G +VEQ++RPTGL+DP +
Sbjct: 401 YGFRLPASIDNRPLKFEEWEALVPRAIFVSATPAEYELNKSHGTVVEQVVRPTGLLDPEI 460

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++++ +EI     +  R L+  LTKRMAE+L  YL +  IR  Y+HS+++TL
Sbjct: 461 EVRPSEYQIDNLMNEIVDRIDKQERTLVVTLTKRMAEELNRYLCQAGIRSAYIHSDIETL 520

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G++DVLVG+NLLREGLD+P+  LVAILDADKEGFLR+  SL QT GRAA
Sbjct: 521 DRVKIMDDLRRGEYDVLVGVNLLREGLDLPQVSLVAILDADKEGFLRNHRSLTQTAGRAA 580

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI---------- 729
           R+VN KVI YAD IT S++L IDET RRR KQ  +N+KH+I P  V  +           
Sbjct: 581 RHVNGKVIFYADKITHSMRLTIDETNRRRAKQQAYNEKHHITPTQVVSQAQSSLWGKTNR 640

Query: 730 ----MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
                +   P    D    N+SI       +  K  A+    R++M  AA ++ F EAA+
Sbjct: 641 ADYNADTATPPTATDGYEKNMSIIRAMEDRNIDKAIAY---ARRRMTEAARSMEFIEAAQ 697

Query: 786 IRDEIKRLK 794
            RDE+ RL+
Sbjct: 698 WRDELLRLE 706


>gi|317180847|dbj|BAJ58633.1| excinuclease ABC subunit B [Helicobacter pylori F32]
          Length = 658

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/662 (48%), Positives = 458/662 (69%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I  + +P ++M
Sbjct: 3   LFDLKSPYLPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTLIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+ TTG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISTTGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  +  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKNNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++VRYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRTLEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDD--EIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|315587002|gb|ADU41383.1| excision endonuclease subunit UvrB [Helicobacter pylori 35A]
          Length = 663

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/662 (48%), Positives = 458/662 (69%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L+K + +    Q L+GVTGSGKT+TMA +I  + +P ++M
Sbjct: 8   LFDLKSPYPPAGDQPQAIEALMKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTLIM 67

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 68  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 127

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 128 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKHAYKSFLLKLVEMGYSR 187

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 188 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVML 247

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 248 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 307

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 308 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 367

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  Q  + EQIIRPTG
Sbjct: 368 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 424

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMH
Sbjct: 425 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 484

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 485 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 544

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK H+I P++V   + E +
Sbjct: 545 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEEL 604

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D      ++   ++  S++  +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 605 K--LRDDEVKIAKALKKDKIPKSER--EKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 660

Query: 794 KS 795
           ++
Sbjct: 661 RT 662


>gi|78188292|ref|YP_378630.1| excinuclease ABC subunit B [Chlorobium chlorochromatii CaD3]
 gi|90110879|sp|Q3ATT8|UVRB_CHLCH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|78170491|gb|ABB27587.1| Excinuclease ABC subunit B [Chlorobium chlorochromatii CaD3]
          Length = 681

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/667 (49%), Positives = 449/667 (67%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +Q+ + Y P+GDQP AI  L++G+      Q LLGVTGSGKTFT++ VI  + RP +VM+
Sbjct: 9   YQLVSPYQPAGDQPKAIEALVQGVRDGRHWQTLLGVTGSGKTFTISNVIAQLNRPVLVMS 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFPHNAVEYF+SYYD+YQPEAY+P  D YI K+  IN++I+R+R 
Sbjct: 69  HNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYLPSLDKYIAKDLRINDEIERLRL 128

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT +LL  R D IVVSSVSCIYG+GS E +   I++L+ G   ++ E L  L+   Y R
Sbjct: 129 RATSALLSGRKDVIVVSSVSCIYGLGSPEEWKAQIIKLRAGMEKDRDEFLRELISLHYLR 188

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+    G FRV GD+I++ P+H E++A R+  FG++IE +  F   TG+ + + E   I
Sbjct: 189 DDVQPTSGRFRVRGDTIDLVPAH-EELALRIEFFGSEIESLQTFDIQTGEILGDDEYAFI 247

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +V     L  AM  I+ EL  RL  L  E R +EA+RLE+R  YDLEM++  G C
Sbjct: 248 YPARQFVADEEKLQVAMLAIENELAGRLNLLRSENRFVEARRLEERTRYDLEMMKELGYC 307

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+++GR  GE P  L +Y PED ++ VDESHVT+PQI GMY GD  RK  L E
Sbjct: 308 SGIENYSRHISGRPAGERPICLLDYFPEDYMVVVDESHVTLPQIRGMYGGDRSRKTVLVE 367

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEE+  + P  I +SATPG  EL +  G +VE ++RPTGL+DPPV
Sbjct: 368 HGFRLPSALDNRPLRFEEYEEMVPQVICISATPGEHELMRSGGEVVELLVRPTGLLDPPV 427

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + Q++++  EI      G + L+  LTKRM+EDL ++  +  IR RY+HSE+K+L
Sbjct: 428 EVRPVKGQIDNLLAEIRHHISIGHKALVMTLTKRMSEDLHDFFRKAGIRCRYLHSEIKSL 487

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+R+LR G  DVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL+Q  GRAA
Sbjct: 488 ERMQILRELRAGDIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 547

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++  V+LYAD IT+SIQ  +DET RRR  Q  +N++H I P+S+ + + +++D   + 
Sbjct: 548 RNLDGFVVLYADVITRSIQEVLDETARRRAIQQRYNEEHGITPRSIVKSVDQILDTTGVA 607

Query: 740 DA------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           DA                  +     +L+ +KG A ++ LR +M  AA+++ +E+AA +R
Sbjct: 608 DAEERYRRRRFGLEPKPERVLSGYADNLTPEKGYAIVEGLRLEMQEAAEHMEYEKAAYLR 667

Query: 788 DEIKRLK 794
           DEI +++
Sbjct: 668 DEITKME 674


>gi|308184852|ref|YP_003928985.1| excinuclease ABC subunit B [Helicobacter pylori SJM180]
 gi|308060772|gb|ADO02668.1| excinuclease ABC subunit B [Helicobacter pylori SJM180]
          Length = 658

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/662 (48%), Positives = 458/662 (69%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA++M
Sbjct: 3   LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRTYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I++++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKHLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  +  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKIHNITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDD--EIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|317014499|gb|ADU81935.1| excinuclease ABC subunit B [Helicobacter pylori Gambia94/24]
          Length = 658

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/662 (48%), Positives = 457/662 (69%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA++M
Sbjct: 3   LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRAMGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQNKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  +  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKENVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI     +G R+L+T LTK+MAE+L +Y  E  ++VRYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKSVVARGERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FDVL+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA   T+S+Q A + T+ RR KQ E NK HNI P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKTTQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDD--EIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|109947030|ref|YP_664258.1| excinuclease ABC subunit B [Helicobacter acinonychis str. Sheeba]
 gi|123362731|sp|Q17YL7|UVRB_HELAH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|109714251|emb|CAJ99259.1| excinuclease ABC subunit B [Helicobacter acinonychis str. Sheeba]
          Length = 658

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/662 (48%), Positives = 457/662 (69%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y  +GDQP AI  L K + ++   Q L+GVTGSGKT+TMA +I    +P ++M
Sbjct: 3   LFDLKSPYSLAGDQPQAIDTLTKSLKNKNHYQTLVGVTGSGKTYTMANIIAQTNKPTLIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRAMGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKILEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  +  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++VRYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FDVL+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + TT RR KQ E NK HNI P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFETTTYRRAKQEEFNKLHNITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D   T I+   ++  + K + +  +K L K+M   A NL+FEEA  +RDEI +L
Sbjct: 600 K--LRDD--ETKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMHLRDEIAKL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|163784875|ref|ZP_02179647.1| excinuclease ABC subunit B [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879856|gb|EDP73588.1| excinuclease ABC subunit B [Hydrogenivirga sp. 128-5-R1-1]
          Length = 595

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/584 (53%), Positives = 418/584 (71%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F+++  + P+GDQP AI QL + +    K Q+LLG TG+GKT T  K IE   +PA+V
Sbjct: 2   TPFKIKLPFKPAGDQPKAIKQLYQNLKDGVKEQVLLGATGTGKTITFGKTIEKYGKPALV 61

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +  NK LAAQ+Y E K  FP NAVEYFVSYYDYYQPEAY+P  D YIEK+SSIN+ IDR+
Sbjct: 62  LTHNKTLAAQIYRELKEIFPDNAVEYFVSYYDYYQPEAYLPEKDVYIEKDSSINDAIDRL 121

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSAT+SL+ER D IVV+SVSCIYG+G+ E Y ++ +QL +G  ++++ELL  L++ QY+
Sbjct: 122 RHSATKSLIERPDTIVVASVSCIYGLGTPEFYEKLRLQLYVGMPIDRQELLRRLIELQYQ 181

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTF V GD++E+  SH ED   R+  FG++IE I+E         R ++   
Sbjct: 182 RDDYSFKRGTFSVKGDTVEVLASHTEDTILRIEFFGDEIEAITELDLFNRNVKRKLDRTV 241

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SHYV P+P +  A++ I+ +L+  + E  K G+ +EA RL QR  YD+EM+   G+
Sbjct: 242 IFPASHYVIPKPDIAEAVRQIQIDLEKEVEEFRKLGKEIEANRLWQRTNYDIEMILELGT 301

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSRY  GR PGE P TL +Y P+D LL +DESHVTIPQI  MY GD  RK  L 
Sbjct: 302 CKGIENYSRYFDGRKPGEAPYTLLDYFPDDYLLIIDESHVTIPQIRAMYNGDRKRKENLV 361

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YG+R+ S  DNRPL+FEE+       I VSATP  WE+E+ +GIIVEQIIRPTGL+DP 
Sbjct: 362 KYGWRMKSAFDNRPLKFEEFLQKIERAIYVSATPSDWEIERSKGIIVEQIIRPTGLLDPE 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V ++    Q++D+  EI    ++  R ++  LTK+MAE+L++YL ER+I+  Y+HSE+ T
Sbjct: 422 VVVKPTEGQIDDLISEIWNIKERNERAIVITLTKKMAENLSDYLQERDIKAVYLHSEIDT 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER +II++LR G +DV+VG+NLLREG+D+PE  LVAILDADK+GFLRS T+LIQ IGRA
Sbjct: 482 IERAKIIKELREGIYDVVVGVNLLREGIDMPEVSLVAILDADKQGFLRSTTALIQIIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
           ARNVN + ILYAD IT +++ AI+ET RRR+ Q E+NKKH I P
Sbjct: 542 ARNVNGRAILYADKITPAMEKAIEETNRRRKLQEEYNKKHGITP 585


>gi|325996380|gb|ADZ51785.1| Excinuclease ABC subunit B [Helicobacter pylori 2018]
          Length = 658

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/662 (49%), Positives = 456/662 (68%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA VI    +P ++M
Sbjct: 3   LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANVIAQTNKPTLIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  Q  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI     +G R L+T LTK+MAE+L +Y  E  ++VRYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKSVVARGERGLITTLTKKMAEELCKYYAEWGLKVRYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FDVL+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKIHNITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDD--EIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|162447877|ref|YP_001621009.1| excinuclease ABC subunit B [Acholeplasma laidlawii PG-8A]
 gi|161985984|gb|ABX81633.1| excinuclease ABC subunit B [Acholeplasma laidlawii PG-8A]
          Length = 654

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/656 (50%), Positives = 448/656 (68%), Gaps = 7/656 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++++ Y PSGDQP AI +L+    S  K Q+LLG TG+GKTFT+A +IE M +  +V+
Sbjct: 4   LFKLKSPYKPSGDQPEAIDKLISNFESGTKEQILLGATGTGKTFTIANIIEKMGKKTLVL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLY E K+ FP N VEYF+SYYDY+QPEAYV  +DTYIEK+SSIN++ID +R
Sbjct: 64  AHNKTLAGQLYGELKSLFPENRVEYFISYYDYFQPEAYVVSSDTYIEKDSSINDEIDELR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSA  SLL R D IVV+SVSCIYGIG  + Y +  + L++G+   +  LL+ L++  Y+R
Sbjct: 124 HSAVASLLTREDVIVVASVSCIYGIGDPDDYKKATIFLRVGEEYGRNNLLNKLIELTYER 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RG+FRV GD+IEI  ++      RVS FG++I++I  F PLTG        + I
Sbjct: 184 NDIDFKRGSFRVRGDAIEIILANEASQGIRVSFFGDEIDDIILFDPLTGVSKERTTFVTI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + ++  +  +  +++ IK EL  ++   +   +LLEAQR+E R  YD+EMLE  G  
Sbjct: 244 FPATLFMANKDKMKESIRRIKNELADQIHFFQGNNQLLEAQRIEMRTKYDIEMLEEIGFT 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR++  R  GE P TL ++  +D L+ +DESHVTIPQ+ GMY GD  RK  L  
Sbjct: 304 SGIENYSRHIALREAGETPATLIDFFGDDYLMVIDESHVTIPQVRGMYFGDRSRKENLVN 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+   +   I +SATPG +ELE+    IVEQIIRPT L+DP +
Sbjct: 364 FGFRLPSALDNRPLQFDEFQARQDKVIYLSATPGPYELERNLP-IVEQIIRPTYLLDPEI 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            I+    Q++D+Y EI    ++  R+L+T LT +M+EDLT +  E  ++V Y+HSEVK+L
Sbjct: 423 TIKPTVGQIDDLYFEIKKRIEKNQRVLVTTLTIKMSEDLTRHFKELGLKVAYLHSEVKSL 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  I+R LRLGK+DVL+GINLLREGLD+PE GLVAILDADK+GFLRS+ SLIQTIGRAA
Sbjct: 483 ERTTILRALRLGKYDVLIGINLLREGLDLPEVGLVAILDADKQGFLRSERSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++  VI+YADTI++S+Q AIDET RRR  Q ++N+ H++ P  V   + ++ D I ++
Sbjct: 543 RNIDGTVIMYADTISESMQKAIDETNRRRSIQTKYNETHHVTPTQV---VKDIRDDISIK 599

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T     D   L L KK+ +  LK L   M  AA +L+FE+A  IRD I  LK+
Sbjct: 600 GVITDK---DLDNLKLDKKQKEKELKRLDTLMRQAAKDLDFEKAMEIRDLIFELKA 652


>gi|219852418|ref|YP_002466850.1| excinuclease ABC subunit B [Methanosphaerula palustris E1-9c]
 gi|219546677|gb|ACL17127.1| excinuclease ABC, B subunit [Methanosphaerula palustris E1-9c]
          Length = 654

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/655 (52%), Positives = 454/655 (69%), Gaps = 19/655 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P G QP AI QL++G+      Q LLGVTGSGKTFT+A VI A+QRP +V+A
Sbjct: 11  FKLVSPFEPKGSQPEAIEQLVQGLSDGPARQTLLGVTGSGKTFTIANVIAAVQRPTLVIA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK+FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK+S IN +I++MR 
Sbjct: 71  HNKTLAAQLYNEFKDFFPENRVEYFVSYYDYYQPESYIPQRDQYIEKDSQINPKIEQMRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T SL+ R D IVV+SVSCIYG+G+ E++  M  +LK+ D V+++ LL  LV+ Q++R 
Sbjct: 131 ATTASLMSRRDVIVVASVSCIYGLGNPENFQSMGFELKVHDRVQRRALLLRLVEIQFERN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ ++ G FRV GD+I+I P +  ++  R+ +FG++IE I E    TG+K  +++   +Y
Sbjct: 191 DLELMPGRFRVKGDTIDIIPGYFNNI-IRIELFGDEIERIMEIDRNTGEKRESMDYFFVY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V P  T   AM  I+EEL+ RL EL      +E+ RL QR  YDLEM+E TGSC+
Sbjct: 250 PARHFVIPEETRKRAMASIREELEERLPELGL----IESHRLAQRTQYDLEMMEETGSCK 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+   R  GE P  L +Y P+D L+ +DESH TIPQ+ GMY+GD+ RK +L +Y
Sbjct: 306 GIENYSRHFDFRKAGEKPYCLLDYFPDDFLMVIDESHQTIPQVHGMYKGDYSRKKSLIDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+       I VSATP  +E E    + VEQIIRPTGL+DPPV 
Sbjct: 366 GFRLPSAFDNRPLKFEEFERYMKDVIYVSATPSRYERETSIQV-VEQIIRPTGLIDPPVT 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q  DV  E+     +G R L+T LTKR+AE+LTEYL +R IR RY+HSE+ T+E
Sbjct: 425 IRPTDGQTVDVIREVKKVIARGDRALITTLTKRLAEELTEYLADRGIRTRYLHSEIDTIE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR LRLG+FDVLVGINLLREGLDIPE G + ILDADKEGFLR   SLIQ IGRAAR
Sbjct: 485 RTEIIRQLRLGEFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDARSLIQIIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++S V+LYADT+T SI+ A+ ET RRR  Q+ +N++H+I P+++++ I E    I L+D
Sbjct: 545 NMHSYVVLYADTMTDSIKTALSETERRRTLQIAYNEEHHIVPETIRKPIRE--KEIDLKD 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                         L +K+    L +L  +M  AA+ L+FE A  +R+ IK+L +
Sbjct: 603 VK-----------HLPRKEIPNLLIALDAEMKQAAEVLDFERAIALRERIKQLNA 646


>gi|308183218|ref|YP_003927345.1| excinuclease ABC subunit B [Helicobacter pylori PeCan4]
 gi|308065403|gb|ADO07295.1| excinuclease ABC subunit B [Helicobacter pylori PeCan4]
          Length = 658

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/662 (48%), Positives = 456/662 (68%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +P ++M
Sbjct: 3   LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANTNKPTLIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRVYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNIAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  Q  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDD--EIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|317182367|dbj|BAJ60151.1| excinuclease ABC subunit B [Helicobacter pylori F57]
          Length = 658

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/662 (48%), Positives = 458/662 (69%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I  + +P ++M
Sbjct: 3   LFDLKSPYPPAGDQPKAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTLIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP + +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPVYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  Q  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V  +++E  
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKLHNITPKTVT-RVLE-- 596

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           + + L D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 597 EELKLRD-DEIKIAKALKKDKVPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|1737482|gb|AAC46270.1| UvrB [Helicobacter pylori]
          Length = 658

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/662 (48%), Positives = 456/662 (68%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +P ++M
Sbjct: 3   LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPTLIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAVKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +D RPL+F+E+   NC     + VSATP   ELE  Q  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDTRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI     +G R+L+T LTK+MAE+L +Y  E  ++VRYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKSVVARGERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FDVL+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDD--EIKIAKALKKDKMPKSEREKIIKELDKKMREHAKNLDFEEAMRLRDEIAQL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|317009722|gb|ADU80302.1| excinuclease ABC subunit B [Helicobacter pylori India7]
          Length = 658

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/662 (48%), Positives = 456/662 (68%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA++M
Sbjct: 3   LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRAIGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  +  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA   T+S+Q A + T+ RR KQ E NK HNI P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKTTQSMQKAFEITSYRRAKQEEFNKLHNITPKTVTRTLEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDD--EIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|217033092|ref|ZP_03438557.1| hypothetical protein HPB128_23g10 [Helicobacter pylori B128]
 gi|298735886|ref|YP_003728411.1| excinuclease ABC subunit B [Helicobacter pylori B8]
 gi|216945193|gb|EEC23882.1| hypothetical protein HPB128_23g10 [Helicobacter pylori B128]
 gi|298355075|emb|CBI65947.1| excinuclease ABC subunit B [Helicobacter pylori B8]
          Length = 658

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/662 (48%), Positives = 456/662 (68%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +P ++M
Sbjct: 3   LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPTLIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  +  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDD--EIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|308062389|gb|ADO04277.1| excinuclease ABC subunit B [Helicobacter pylori Cuz20]
          Length = 658

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/662 (48%), Positives = 456/662 (68%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I  + +P ++M
Sbjct: 3   LFDLKSSYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTLIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRVYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  Q  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK H+I P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D      ++   ++  S++  +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDDEVKIAKALKKDKIPKSER--EKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|297380290|gb|ADI35177.1| excinuclease ABC, B subunit [Helicobacter pylori v225d]
          Length = 663

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/662 (48%), Positives = 456/662 (68%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I  + +P ++M
Sbjct: 8   LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTLIM 67

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 68  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 127

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 128 LSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 187

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 188 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVML 247

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 248 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 307

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 308 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 367

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  Q  + EQIIRPTG
Sbjct: 368 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 424

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMH
Sbjct: 425 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 484

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 485 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 544

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK H+I P++V   + E +
Sbjct: 545 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEEL 604

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D      ++   ++  S++  +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 605 K--LRDDEVKIAKALKKDKIPKSER--EKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 660

Query: 794 KS 795
           ++
Sbjct: 661 RT 662


>gi|145219261|ref|YP_001129970.1| excinuclease ABC subunit B [Prosthecochloris vibrioformis DSM 265]
 gi|145205425|gb|ABP36468.1| Excinuclease ABC subunit B [Chlorobium phaeovibrioides DSM 265]
          Length = 689

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/669 (48%), Positives = 448/669 (66%), Gaps = 14/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAIA L +G+ S    Q LLGVTGSGKT+TM+ VI    +P +VM+
Sbjct: 13  FRLVSPYAPAGDQPAAIAALTEGLKSGSDYQTLLGVTGSGKTYTMSNVIANAGKPVLVMS 72

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E + FFP NAVEYF+SYYD+YQPEAY+P  D YI K+  IN++I+R+R 
Sbjct: 73  HNKTLAAQLYGELRQFFPDNAVEYFISYYDFYQPEAYLPTIDKYIAKDLRINDEIERLRL 132

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT +LL  R D IVVSSVSCIYG+GS E +   I++L+ G   E+ E L  L+   + R
Sbjct: 133 KATSALLSGRKDVIVVSSVSCIYGLGSPEDWKSQIIELRTGMEKERDEFLQELIALHFVR 192

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+    G FRV GD I++ P++ + +A RV  FG++IE +  F   +G+ + +     I
Sbjct: 193 DDVNPGPGKFRVRGDCIDLVPAY-DQIALRVEFFGSEIESLQSFDMESGEILGSDAYAFI 251

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +V     L TAM  I++EL  RL EL  + R +EA RLE+R  YDLEM++  G C
Sbjct: 252 YPARQFVAEEEKLKTAMLAIEDELAGRLNELRADNRFVEAGRLEERTRYDLEMMKELGYC 311

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+++ R PGE P  L +Y PED L+ VDESHVT+PQI GMY GD  RK  L E
Sbjct: 312 SGIENYSRHISQRGPGERPYCLLDYFPEDYLVVVDESHVTLPQIRGMYGGDRSRKTILVE 371

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRF+E+  + P  + +SATPG  EL +  G++VEQ++RPTGL+DPPV
Sbjct: 372 HGFRLPSALDNRPLRFDEFEEMAPQVVCISATPGDHELLRSGGVVVEQVVRPTGLLDPPV 431

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + Q++++  EI      G + L+  LTKRM+EDL ++  +  IR RY+HSE+K+L
Sbjct: 432 EVRPVKGQIDNLLAEIRRHVAGGHKALVMTLTKRMSEDLHDFFRKSGIRSRYLHSEIKSL 491

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+R+LR G+ DVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL+Q  GRAA
Sbjct: 492 ERMQILRELRTGEIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 551

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN    V+LYADTIT+SI+  +DET RRR  Q  +N +H I P+S+ + + +++D   + 
Sbjct: 552 RNAEGFVVLYADTITRSIREVLDETARRRTIQQAYNDEHGIVPRSIVKSVNQILDTTGVA 611

Query: 740 DAATT------NISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           DA          +    ++L      SL+  +G A +  LR +M  AA  + +E+AA +R
Sbjct: 612 DAEERYRRRRFGLVPKPERLLAGALESLTADEGLAMVAELRVEMQEAAVKMEYEKAAYLR 671

Query: 788 DEIKRLKSS 796
           DEI +L+  
Sbjct: 672 DEITKLEQG 680


>gi|261839846|gb|ACX99611.1| excinuclease ABC subunit B [Helicobacter pylori 52]
          Length = 658

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/662 (48%), Positives = 457/662 (69%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA++M
Sbjct: 3   LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKCLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  +  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++VRYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK H+I P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKLHHITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDD--EIRIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|167753248|ref|ZP_02425375.1| hypothetical protein ALIPUT_01520 [Alistipes putredinis DSM 17216]
 gi|167659179|gb|EDS03309.1| hypothetical protein ALIPUT_01520 [Alistipes putredinis DSM 17216]
          Length = 680

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/678 (48%), Positives = 457/678 (67%), Gaps = 22/678 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AIAQLL  I    K   LLGVTGSGKTFT+A VI  + RP +V++
Sbjct: 3   FKLVSDYAPTGDQPEAIAQLLASIRHGSKHNTLLGVTGSGKTFTVANVISQLNRPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFKNFFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+ SIN++I++MR 
Sbjct: 63  HNKTLAAQLYGEFKNFFPENAVEYFVSYYDYYQPEAYLPSTDTYIEKDLSINDEIEKMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T +LL  R D IVVSSVSC+YG G+   +  M + +++G+ +  K+ L  LV+  Y R
Sbjct: 123 STTATLLSGRRDVIVVSSVSCLYGCGNPSDFHSMAIHIEVGEILNYKQFLYKLVEALYTR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLE--DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            +  +   TFRV GD+I+I  +  E  +  +RV+ F N++E I    P+TGQ+I+ ++ +
Sbjct: 183 TERELTPATFRVTGDTIDIMAAFGEFGNQCFRVTFFDNEVESIQSIDPVTGQRIQTLDAL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  S +VT +  ++TA++ I  +L  ++   E+ GR  EAQR++QR+ YDLEM++  G
Sbjct: 243 TLYPVSLFVTTKERIHTAVQQIYLDLGKQIAFFEQAGRPAEAQRIKQRVEYDLEMIKELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR  G  P  L +Y P+D L+ +DESHVT+PQ+  M+ GD  RK  L
Sbjct: 303 YCPGIENYSRYFDGRAEGTRPFCLLDYFPQDYLMVIDESHVTLPQVHAMFGGDRARKENL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP+  DNRPLRFEE+  L  TTI VSATP  +EL + +G+IVEQ+IRPTGLVDP
Sbjct: 363 VEYGFRLPAAKDNRPLRFEEFEQLVGTTIYVSATPADYELMKSEGVIVEQLIRPTGLVDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+E+R    Q++D+ +EI+   +   +IL+T +TKRMAE+L++Y     +R RY+HS++ 
Sbjct: 423 PLEVRITDNQIDDLLEEIDKRVRNDDKILVTTITKRMAEELSKYFDRVGVRNRYIHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++I+ DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR+  S+ Q  GR
Sbjct: 483 TLERVQILEDLRAGMFDVLIGVNLLREGLDLPEVALVAILDADKEGFLRNVRSITQIAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK--------- 728
           AAR+ N  VILYAD  T S++ AI+++ RRREKQ+ +N +H + P+  ++          
Sbjct: 543 AARHSNGNVILYADHCTDSMRYAIEQSNRRREKQMRYNMEHEMLPRQAQKSGSGQSTLLA 602

Query: 729 ---IMEVIDPIL--LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
                 V D IL  L D   T ++ D    + S +     +   R++M  AA +L+F  A
Sbjct: 603 NTVQTPVTDGILYPLPDNRQT-LAADVTS-AYSTESIDTQIARAREEMERAAKSLDFLAA 660

Query: 784 ARIRD---EIKRLKSSPY 798
            + RD   E+++LK S Y
Sbjct: 661 TKFRDRMYELQKLKESEY 678


>gi|154249185|ref|YP_001410010.1| excinuclease ABC subunit B [Fervidobacterium nodosum Rt17-B1]
 gi|229557962|sp|A7HKC0|UVRB_FERNB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|154153121|gb|ABS60353.1| excinuclease ABC, B subunit [Fervidobacterium nodosum Rt17-B1]
          Length = 661

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/659 (50%), Positives = 458/659 (69%), Gaps = 11/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ +DY P GDQP AI  L+ G++   + Q LLGVTGSGKTFTMA VI+ + RP ++++
Sbjct: 3   YELISDYEPMGDQPQAIESLVNGLNKGYRFQTLLGVTGSGKTFTMANVIKEVNRPVLIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEFK FFP+N VE+F+SYYDYYQPEAYVP  D YIEK + IN+ I RMR 
Sbjct: 63  PNKTLAAQLYSEFKAFFPNNKVEFFISYYDYYQPEAYVPTKDLYIEKSADINDVIARMRM 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR- 319
           SA +S++ R D IVV+SVS IY  G    +  + ++L++G  +   E +  LVK  Y+R 
Sbjct: 123 SAIKSIMTRRDVIVVASVSAIYACGDPRDFDTLNIKLEVGQRINLSEFVKKLVKIGYERK 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           +DIG+  G+FR+ GD++EIFPS+ +D   R+ +FG++I+ +  F  +    I  ++ + I
Sbjct: 183 EDIGLT-GSFRLRGDTLEIFPSY-QDEGIRIELFGDEIDRMYTFDRMNRDVIERLDRLTI 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    YVT    +  A+K I+ EL  ++ +L  EG+ LEAQRL QR   D+E+L T G C
Sbjct: 241 YPTKEYVTTEEKIERAVKSIRAELDEQVKKLRSEGKELEAQRLWQRTMNDIELLSTLGYC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GR PGEPP +L +Y  ED ++F+DESH+TIPQ+  MY G+  RK +L E
Sbjct: 301 TGIENYSRHFDGRQPGEPPYSLLDYYDEDFIVFIDESHITIPQLRAMYHGEMSRKKSLVE 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP   DNRPL+F+E+       I VSATPG +ELE  + + VEQIIRPTGL+DP V
Sbjct: 361 YGFRLPCAYDNRPLKFDEFMQKVNQVIFVSATPGPYELEVSEQV-VEQIIRPTGLIDPQV 419

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  R QV+D+ +EI    ++G + L+TVLTK+ AE L EYL E NIR  Y+HSE+  +
Sbjct: 420 EVRPTRYQVDDLVNEIVQVKKRGEKALVTVLTKKTAEMLAEYLVEFNIRALYLHSELDAI 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+E+++ LR G+ DV+VG+NLLREGLD+PE  LVAILDAD EGFLRS+T+LIQ IGR A
Sbjct: 480 KRVEVLKKLRAGEIDVVVGVNLLREGLDLPEVSLVAILDADTEGFLRSETTLIQIIGRTA 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME-VIDPILL 738
           RN N KVI+YAD IT ++Q AIDET RRR+ Q+E+N+KH I P+++ + +ME +  P   
Sbjct: 540 RNENGKVIMYADRITPAMQRAIDETNRRRKIQMEYNEKHGIKPKTIIKPLMEDIFAPFRD 599

Query: 739 EDAATTNI---SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           ++     +   SI   + SLS ++  A L+    +M+ AA  L +E+AAR+RDE+ ++K
Sbjct: 600 KEEEMYKVYEDSILQMKESLSLEEYAALLEE---EMYKAASELRYEDAARLRDELFKIK 655


>gi|76801024|ref|YP_326032.1| excinuclease ABC subunit B [Natronomonas pharaonis DSM 2160]
 gi|90111041|sp|Q3ITS0|UVRB_NATPD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|76556889|emb|CAI48463.1| excinuclease ABC chain B [Natronomonas pharaonis DSM 2160]
          Length = 683

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/658 (50%), Positives = 451/658 (68%), Gaps = 10/658 (1%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206
           + P+GDQP AI  L+ G  S  + Q LLGVTGSGKT T++ V+E +Q+P +V+A NK LA
Sbjct: 24  FEPAGDQPDAIETLVAGFESGAEKQTLLGVTGSGKTNTVSWVLEELQQPTLVLAHNKTLA 83

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266
           AQLY EF+  FP NAVEYFVSYYDYYQPEAYV +TDTYI+K+ SINE+I+R+RHSATRSL
Sbjct: 84  AQLYEEFRELFPDNAVEYFVSYYDYYQPEAYVEQTDTYIDKDMSINEEIERLRHSATRSL 143

Query: 267 LERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
           L R+D IVV+SVS IYG+G   +Y +M ++L+ GD   +++LLS+LV+  Y+R D+   +
Sbjct: 144 LTRDDVIVVASVSAIYGLGDPANYEEMALRLEAGDERSREDLLSALVELNYERNDVDFQQ 203

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           GTFRV GD++EI+P +    A RV  +G++I+ + +   + G+ +       I+   HY 
Sbjct: 204 GTFRVRGDTVEIYPMYGRH-AVRVEFWGDEIDRLLKVDIVDGEVVSEEPATLIHPAEHYS 262

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
            P   L TA++ I+  L+ R+   E++G L+ AQR+E+R T+D+EML+ TG C  IENYS
Sbjct: 263 VPDRRLETAIEEIEGLLEDRIDYFERQGDLVAAQRIEERTTFDIEMLQETGHCSGIENYS 322

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS 506
            +++ R  GEPP TL +Y P+  L  +DESH TIPQI G + GD  RK +L E GFRLP+
Sbjct: 323 VHMSDRETGEPPYTLLDYFPDGFLTVIDESHQTIPQIKGQFEGDRSRKESLVENGFRLPT 382

Query: 507 CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
             DNRPL+FEE+      T+ VSATPG +E +  +  +VEQI+RPT LVDP +E+  A  
Sbjct: 383 AYDNRPLKFEEFEAKTDRTLYVSATPGDYERDHSEQ-VVEQIVRPTYLVDPDIEVEPAEK 441

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           QVED+ + I  A  +  R+L+T LTKRMAEDLTEYL    + V YMH E  TLER E++R
Sbjct: 442 QVEDLIERIQ-ATPEDERVLVTTLTKRMAEDLTEYLENAGVDVAYMHDETDTLERHELVR 500

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
            LRLG+  VLVGINLLREGLDIPE  LVAILDAD+EGFLRS+T+L+QT+GRAARNV   V
Sbjct: 501 SLRLGEIQVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTLVQTMGRAARNVEGSV 560

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
           +LYAD  T S+  AI+ET RRRE Q E N +H   P+++++ + E   P      ++T+ 
Sbjct: 561 VLYADETTDSMAAAIEETRRRREIQREFNAEHGHEPRTIEKPVSETNLP-----GSSTDT 615

Query: 747 SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
              A     +  + +  ++ L  +M  AADNL FE AA IRD I+ L+ +  F GL+D
Sbjct: 616 DGVADVAPDTVDEAEQLIERLETRMQEAADNLEFELAADIRDRIRELRET--FDGLED 671


>gi|189345954|ref|YP_001942483.1| excinuclease ABC subunit B [Chlorobium limicola DSM 245]
 gi|238692185|sp|B3EFX1|UVRB_CHLL2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189340101|gb|ACD89504.1| excinuclease ABC, B subunit [Chlorobium limicola DSM 245]
          Length = 684

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/667 (49%), Positives = 452/667 (67%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + Y P GDQP AI QL++G+   ++ Q LLGVTGSGKTFT++ +I  + +P +VM+
Sbjct: 9   YRLVSSYSPKGDQPKAIEQLVEGVQRGDRWQTLLGVTGSGKTFTISNLIAQVGKPVLVMS 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E + FFP NAVEYF+SYYD+YQPEAY+P  D YI K+  IN++I+R+R 
Sbjct: 69  HNKTLAAQLYGELRQFFPDNAVEYFISYYDFYQPEAYLPALDKYIAKDLRINDEIERLRL 128

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVVSSVSCIYG+GS E +   I++L+ G   ++ + L  LV   Y R
Sbjct: 129 KATSSLLSGRRDVIVVSSVSCIYGLGSPEEWKAQIIELRPGMEKDRDQFLQELVSLHYVR 188

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+    G FRV GD I++ P+H E++A RV  FG +IE +  F   +G+ +   +   I
Sbjct: 189 DDMKPGPGKFRVRGDIIDLVPAH-EELAVRVEFFGPEIESLQTFDMQSGEVLGRDDYAFI 247

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +V     +  AM  I+ EL  RL EL  E RL+EA+RLE+R  YDLEM++  G C
Sbjct: 248 YPARQFVAGEEQMRHAMLAIENELAGRLNELRGENRLIEARRLEERTRYDLEMMKELGYC 307

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L GR PG+ P  L +Y PED L+ VDESHVT+PQI GMY GD  RK  L E
Sbjct: 308 SGIENYSRHLAGREPGDRPHCLLDYFPEDYLVVVDESHVTLPQIRGMYGGDRSRKTILVE 367

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRF+E+  L P  + VSATPG  ELE   G+IVEQ++RPTGL+DPPV
Sbjct: 368 HGFRLPSALDNRPLRFDEYVGLVPQVVCVSATPGDLELEYSGGVIVEQLVRPTGLLDPPV 427

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + Q++D+  EI     +G + L+  LTKRM+EDL +Y  +  IR RY+HSE+K+L
Sbjct: 428 EVRPVKGQIDDLLGEIRKHTARGFKALIMTLTKRMSEDLDDYFRKTGIRSRYLHSEIKSL 487

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+R+LR G+ DVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL+Q  GRAA
Sbjct: 488 ERMQILRELRTGEIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 547

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN    V+LYAD +T+SI+  +DET+RRR+ Q  +N++H I PQS+ + + +V++   + 
Sbjct: 548 RNSEGFVVLYADVLTRSIREVLDETSRRRKIQQAYNEEHGIVPQSIIKSVEQVLNTTGVA 607

Query: 740 DAATT------NISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           DA          +    ++L      +L+ ++  +  +SLR +M  AA  + +E+AA +R
Sbjct: 608 DAEERYRRKRFGLEPKPERLLSTLIDTLTAEECYSMAESLRLEMQEAALKMEYEKAAYLR 667

Query: 788 DEIKRLK 794
           DEI + +
Sbjct: 668 DEITKFE 674


>gi|189500951|ref|YP_001960421.1| excinuclease ABC subunit B [Chlorobium phaeobacteroides BS1]
 gi|226695480|sp|B3EMK1|UVRB_CHLPB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189496392|gb|ACE04940.1| excinuclease ABC, B subunit [Chlorobium phaeobacteroides BS1]
          Length = 690

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/669 (48%), Positives = 441/669 (65%), Gaps = 14/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y P GDQP AI  L +G+   +  Q+LLGVTGSGKTFTMA VI  + +P ++++
Sbjct: 9   FRLESSYEPEGDQPQAIEALRQGVMDGQTNQVLLGVTGSGKTFTMANVIAEVNKPVLLIS 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFPHNAVEYF+SYYD+YQPEAY+P  D YI K+  IN++I+R+R 
Sbjct: 69  HNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPTMDKYIAKDLKINDEIERLRL 128

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVVSSVSCIYG+G+ E +   I++L++    E+   L  L+   + R
Sbjct: 129 KATSSLLSGRKDVIVVSSVSCIYGLGAPEDWKAQIIELRVNMEKERDSFLQELISLHFVR 188

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D  +  G FRV GD I++ P H E+ A RV  FG++IE +  F   TG+   + E   I
Sbjct: 189 DDSDLAPGKFRVRGDVIDLVPMH-EESALRVEFFGDEIERLQLFDHTTGEIFEDEEYAFI 247

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +V  R  L  AM  I++EL  RL       + +EA+R+E+R  YDLEM++  G C
Sbjct: 248 YPARQFVAGREKLQQAMLGIEDELAHRLNVFRSGEKFVEARRIEERTRYDLEMIKELGYC 307

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+GR  GE P  L +Y PED L+ VDESHVT PQI GMY GD  RK  L E
Sbjct: 308 SGIENYSRHLSGRKAGERPYCLLDYFPEDYLVIVDESHVTFPQIRGMYAGDRSRKTILVE 367

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+  + P  I VSATPG +EL +  G +VEQ++RPTGL+DP +
Sbjct: 368 YGFRLPSALDNRPLRFEEFETMVPQLISVSATPGDYELRRSGGSVVEQLVRPTGLLDPEI 427

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R    Q++D+ +EI     +G + L+  LTKRM+EDL +YL +  +R RY+HSE+K+L
Sbjct: 428 VVRPVNGQIDDLLEEIRKHTGKGFKSLVMTLTKRMSEDLHDYLRKAGLRTRYLHSEIKSL 487

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+R+LR G+ D+LVG+NLLREGLD+PE  LVAILDADKEGFLR   SL+Q  GRAA
Sbjct: 488 ERMQILRELRTGEIDILVGVNLLREGLDLPEVSLVAILDADKEGFLRDSKSLMQIAGRAA 547

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV   V+ YAD IT S++  IDET RRR  Q + N+ H + P S+ + + +V+D   + 
Sbjct: 548 RNVEGMVVFYADRITASMRYVIDETERRRSVQRKFNEDHGVIPASIVKSVDQVLDTTGVA 607

Query: 740 DAAT------------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           DA              +   I+    SL ++   A  + LR +M  AA+++ FE+AA +R
Sbjct: 608 DAEDRFRRRRFGLEQRSRRGIEDLVGSLKREDLYAMAEELRLEMQEAAESMEFEKAAYLR 667

Query: 788 DEIKRLKSS 796
           DE+ +L+ +
Sbjct: 668 DEVTKLEDA 676


>gi|317177865|dbj|BAJ55654.1| excinuclease ABC subunit B [Helicobacter pylori F16]
          Length = 658

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/662 (48%), Positives = 457/662 (69%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I  + +P ++M
Sbjct: 3   LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAKINKPTLIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSAVTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  +  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++VRYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK H+I P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDD--EIKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|257053424|ref|YP_003131257.1| excinuclease ABC subunit B [Halorhabdus utahensis DSM 12940]
 gi|256692187|gb|ACV12524.1| excinuclease ABC, B subunit [Halorhabdus utahensis DSM 12940]
          Length = 685

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/663 (51%), Positives = 449/663 (67%), Gaps = 8/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIAQL +G  S    Q LLGVTGSGKT T++ V+E +Q+P +V+A
Sbjct: 19  FRVDAPFDPAGDQPNAIAQLAEGYRSGMDEQTLLGVTGSGKTNTVSWVLEEIQQPTLVIA 78

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+  FP NAVEYFVSYYDYYQPEAYV +TD YIEK++SIN++IDR+RH
Sbjct: 79  HNKTLAAQLYEEFRELFPDNAVEYFVSYYDYYQPEAYVEQTDKYIEKDASINDEIDRLRH 138

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL R+D IVV+SVS IYG+G   +Y  M ++L++G  +++ ELL  LV   Y+R 
Sbjct: 139 SATRSLLTRDDVIVVASVSAIYGLGDPANYVDMSLRLEVGQEIDRDELLGRLVDLNYERN 198

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   +GTFRV GD++EI+P +    A RV ++G +I+ IS+  PL G+         I+
Sbjct: 199 DVDFTQGTFRVRGDTVEIYPMYGR-YALRVELWGEEIDRISKLDPLEGELQSEEPAALIH 257

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HY  P   +  A++ I+E ++ R+   E++G L+ AQR+E+R T+DLEMLE TG C 
Sbjct: 258 PAEHYSIPEQEIENAIEEIEELMERRVDYFERQGDLVAAQRIEERTTFDLEMLEETGYCS 317

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L+ R  GE P TL +Y P+D L  VDESH TIPQI G Y GD  RK +L E 
Sbjct: 318 GIENYSVHLSDRESGEAPYTLLDYFPDDFLTVVDESHQTIPQIKGQYEGDKSRKDSLVEN 377

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+  DNRPL FEE+      T+ VSATP  +E EQ    +VEQI+RPT LVDP +E
Sbjct: 378 GFRLPTAYDNRPLTFEEFEEKTDQTLYVSATPSDYEREQSDQ-VVEQIVRPTYLVDPEIE 436

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +  A +QV+D+ D ++ A     R L+T LTKRMAEDLTEYL E  + V YMH E  TLE
Sbjct: 437 VSPAESQVDDLMDRLD-ALPDDERALVTTLTKRMAEDLTEYLEEAGVAVEYMHDETDTLE 495

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E++R LR G+FDVLVGINLLREGLDIPE  LVAILDAD+EGFLRS+T+L+QT+GRAAR
Sbjct: 496 RHELVRGLRAGEFDVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTLVQTMGRAAR 555

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN KV+LYAD  + +++ AI ET RRR  Q E+N+++   P ++++ I E   P     
Sbjct: 556 NVNGKVVLYADEPSDAMESAIAETKRRRRIQREYNEEYGHEPTTIEKAIGETNLP----- 610

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
            + T     A      ++     ++ L ++M  AADNL FE AA IRD I+ L+      
Sbjct: 611 GSKTETGGSATADPEDEEAAARLIEELEERMGEAADNLEFELAADIRDRIRELREEYDLD 670

Query: 801 GLD 803
           G D
Sbjct: 671 GPD 673


>gi|307299265|ref|ZP_07579066.1| excinuclease ABC, B subunit [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915061|gb|EFN45447.1| excinuclease ABC, B subunit [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 668

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/669 (49%), Positives = 448/669 (66%), Gaps = 18/669 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F+M + Y P GDQP AI +L+ G+ S ++ Q LLGVTGSGKTFTMA VI  +QRPAIV+
Sbjct: 2   LFEMDSSYSPQGDQPQAIEKLIDGLKSGDRFQTLLGVTGSGKTFTMANVISTLQRPAIVI 61

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           +PNK L AQLY EFK FFP N VE F+SYYDYY PE+Y+P  D +IEKE+ INE ++RMR
Sbjct: 62  SPNKTLVAQLYREFKTFFPKNKVELFISYYDYYMPESYIPSKDLFIEKEAEINETLERMR 121

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA +S+L RND +V++SVS IY  G  + ++ M + L+ G S+ +KEL   L   QY R
Sbjct: 122 ISALKSVLTRNDTVVLASVSAIYASGDPKDFATMNIFLERGKSINRKELALKLANIQYNR 181

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +     G F V G+  EIFP + ED   R+  F ++IE I  F P+  + I  ++ + +
Sbjct: 182 SEDVSAGGVFHVKGEIFEIFPPY-EDFGIRLYFFDDEIERIVSFDPINRKTIEELDMVTV 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +VT +  +  AM+ I+ EL+ R+ +LE+EG+ LEAQRL QR TYD+EML + G C
Sbjct: 241 YPAKEFVTTQDKILGAMRNIENELEERVKQLEREGKYLEAQRLRQRTTYDMEMLSSVGYC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL-FVDESHVTIPQISGMYRGDFHRKATLA 498
             IENYSR+  GR PGE P TL +Y   +  + F+DESH+ +PQ+  MYRGD+ RK  L 
Sbjct: 301 SGIENYSRFFDGRMPGEKPYTLLDYFDREKFITFIDESHIGVPQLGAMYRGDYSRKKNLV 360

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLP+  DNRPL+FEE+       + VSATPG++E E    II +Q+IRPTGLVDP 
Sbjct: 361 DYGFRLPAAFDNRPLKFEEFLSTVGQIVFVSATPGNFEAEHSTRII-DQVIRPTGLVDPE 419

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V +    +QV+D  + +    ++  R L+TVLTK+ AE L++YL E  IR  Y+HSE+  
Sbjct: 420 VIVHPTESQVDDFIERMREVKKRNERALVTVLTKKAAEMLSDYLNEVGIRSEYLHSELDA 479

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+E++R LR G  +V+VG+NLLREGLD+PE  LVAI+DADKEGFLRS+T+LIQTIGRA
Sbjct: 480 IERVEVLRKLRDGTVEVVVGVNLLREGLDLPEVSLVAIMDADKEGFLRSETTLIQTIGRA 539

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN +VILYADT+T S++ AIDET RRR KQL +NK+HNI P+S+ + +   I     
Sbjct: 540 ARNVNGQVILYADTMTGSMKRAIDETNRRRLKQLIYNKEHNITPESIVKPLYRNI----F 595

Query: 739 EDAATTNISIDAQ-QLSLSKKKGKAHLKS----------LRKQMHLAADNLNFEEAARIR 787
           E+ A  N+  + + +   +  +G   LK           L ++M  AA  L FE+AA +R
Sbjct: 596 EEFAGENLDKEREDKARATYLEGVMALKESLDYEDYIALLNEEMIRAAGELRFEDAAILR 655

Query: 788 DEIKRLKSS 796
           DE+  LK S
Sbjct: 656 DEMYSLKKS 664


>gi|206895378|ref|YP_002247043.1| excinuclease ABC, B subunit [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737995|gb|ACI17073.1| excinuclease ABC, B subunit [Coprothermobacter proteolyticus DSM
           5265]
          Length = 651

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/655 (49%), Positives = 448/655 (68%), Gaps = 14/655 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + PSGDQP AI +L  GI+   K Q LLGVTGSGKTFTMAK+IEA+  P +V++
Sbjct: 5   FKVEAPFEPSGDQPEAIEKLCDGINKGFKFQTLLGVTGSGKTFTMAKIIEALNLPTLVIS 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LA QLYSEF+ FFPHNAVE F+SYYDYY+PEAY+P TDTY+ K+++INE ID+MR 
Sbjct: 65  PNKTLAVQLYSEFREFFPHNAVELFMSYYDYYRPEAYIPETDTYLPKDAAINEDIDKMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  SLL R D +VV+SVSCIY + + E ++     +  G  +  K  +  L +  Y+R 
Sbjct: 125 SAISSLLSRRDVVVVASVSCIYSLENPEVFAGSAFSITEGMKMNTKFFMRRLSQISYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND-IEEISEFYPLTGQKIRNVETIKI 379
           DI +  G FR  G  +++FP H + +   V  F +D IE I E  PLTG+++ +  +   
Sbjct: 185 DIELRPGNFRSRGFKVDVFPPHAQGIISVV--FDDDVIESIYESDPLTGERMFSYHSYTF 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           + + ++VT    +   +  +  EL  ++ + ++EG+ +EAQR+E+R  YD+EML +TG C
Sbjct: 243 FPSKYFVTSEQLIRNVVDQVMVELDKQVRQFKEEGKYIEAQRIEERTKYDMEMLLSTGYC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY +GR  G+ P TL +Y     L+F+DESH+TIPQI  M+ G+  RK TL  
Sbjct: 303 SGIENYSRYFSGRREGQRPYTLLDYFRRPYLMFIDESHLTIPQIRAMFHGEMQRKETLVR 362

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS  DNRPL F+E+  L    I VSATPG +ELE  + + VEQI+RPTGLVDP V
Sbjct: 363 FGFRLPSAKDNRPLNFDEFLSLVDKVIFVSATPGPYELEVSKQV-VEQIVRPTGLVDPEV 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            ++ A+ QV+D+  E+    Q G R L+  LTK+MAE L+ YL     +VRY+HSE+  +
Sbjct: 422 VVKPAKNQVDDLVRELTRVVQHGERALVLTLTKQMAEKLSTYLSSLKFKVRYLHSEIDVI 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +++++LR G  D++VGINLLREGLD+PE  LVA+LDADKEGFLRS+ SLIQ IGRA+
Sbjct: 482 ERSQVLKELRTGVIDIIVGINLLREGLDLPEVSLVAVLDADKEGFLRSERSLIQMIGRAS 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN +VILYAD +T S++ A+DET RRREKQL +NK+H I PQ+V++++++ +D     
Sbjct: 542 RNVNGRVILYADQLTDSLRSAVDETNRRREKQLAYNKEHGITPQTVRKRVVDYLD----- 596

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 IS  A    ++K++  A L  L ++M+ AA+ L FE+A  IRD+IK LK
Sbjct: 597 -----FISGAASGSRMTKEEANAMLLQLEQEMYEAAEALEFEKAIVIRDKIKELK 646


>gi|317178583|dbj|BAJ56371.1| excinuclease ABC subunit B [Helicobacter pylori F30]
          Length = 658

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/662 (48%), Positives = 456/662 (68%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I  + +P ++M
Sbjct: 3   LFDLKSPYPPAGDQPKAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAKINKPTLIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  +  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKENVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKLHNITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 R--LRDD--EIKIAKALKKDKVPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|254779666|ref|YP_003057772.1| excinuclease ABC subunit B [Helicobacter pylori B38]
 gi|254001578|emb|CAX29614.1| UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B)
           [Helicobacter pylori B38]
          Length = 658

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/662 (48%), Positives = 455/662 (68%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP  I  L K + +    Q L+GVTGSGKT+TMA +I    +P ++M
Sbjct: 3   LFDLKSPYPPAGDQPQTIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPTLIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  +  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++VRYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M     NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDD--EIRIAKALKKDKMPKSEREKIIKELDKKMRECTKNLDFEEAMRLRDEIAQL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|313203369|ref|YP_004042026.1| excinuclease ABC subunit b [Paludibacter propionicigenes WB4]
 gi|312442685|gb|ADQ79041.1| Excinuclease ABC subunit B [Paludibacter propionicigenes WB4]
          Length = 666

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/659 (48%), Positives = 457/659 (69%), Gaps = 6/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AI QL++G+++    Q LLGVTGSGKTF++A V+E +QRP +V++
Sbjct: 3   FKLIFPFRPTGDQPEAIRQLVEGLNADIPFQTLLGVTGSGKTFSIANVVEQIQRPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAY+P +DTYIEK+ +IN++I+++R 
Sbjct: 63  HNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYLPVSDTYIEKDLAINQEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           + T +LL  R D +VVSSVSCIYG+G+ + ++  ++ +  G  V + + L +LV   Y R
Sbjct: 123 ATTSALLSGRRDVLVVSSVSCIYGMGNPDDFNSNVIDIHRGQKVVRNDFLRTLVDSLYTR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +I + RG FRV GD+++IF ++  D   RV  +G++IE+I    PLT     + ++ KI
Sbjct: 183 NEIELNRGNFRVKGDTVDIFLAY-ADFVLRVVFWGDEIEDIQTVDPLTFNVQESFDSYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  S +VT +  L  A++ I+ ++  ++      G+  EA+R+ +R+ YD+EM++  G C
Sbjct: 242 YPASIFVTTKERLAAAIQLIEIDMAKQVDYFRSIGKHYEAKRIYERVNYDIEMIKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L +Y P+D L+ +DESHV+I QI  M+ GD  RK  L +
Sbjct: 302 SGIENYSRYFDGREAGSRPFCLLDYFPKDFLMVIDESHVSISQIRAMFGGDSARKQNLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS  DNRPL+FEE+  L P TI VSATP  +ELE+ QGI+++Q+IRPTGL+DP +
Sbjct: 362 YGFRLPSAKDNRPLKFEEFEELAPQTIYVSATPADYELEKSQGIVIDQLIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LT+YL +  ++  Y+HS+V TL
Sbjct: 422 DVRPSLNQIDDLLEEITVRTEKNERTLVTTLTKRMAEELTDYLGKMGVQCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVQIMEDLRRGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIMEVIDPI 736
           RN+N +VI+YAD IT S+Q  I ET RRREKQL +N+ H I P ++   +       +P+
Sbjct: 542 RNLNGRVIMYADKITDSMQKTISETNRRREKQLAYNEAHGITPTAIVKGERNSFSKAEPL 601

Query: 737 -LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             +E   + +I+ D     +SK   +  +   +K M  AA  L F EAA++RDE+ +L+
Sbjct: 602 AYIEPENSKSIAADPVVQYMSKSALEKAIAKTKKSMQEAAKKLEFLEAAQLRDELIKLE 660


>gi|261838445|gb|ACX98211.1| excinuclease ABC subunit B [Helicobacter pylori 51]
          Length = 658

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/662 (48%), Positives = 455/662 (68%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA++M
Sbjct: 3   LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++ +R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLECLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  Q  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK H+I P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDD--EIKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|217034664|ref|ZP_03440069.1| hypothetical protein HP9810_901g11 [Helicobacter pylori 98-10]
 gi|216942872|gb|EEC22363.1| hypothetical protein HP9810_901g11 [Helicobacter pylori 98-10]
          Length = 658

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/662 (48%), Positives = 456/662 (68%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I  + +P ++M
Sbjct: 3   LFDLKSPYLPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQINKPTLIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  +  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK H+I P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D     I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 600 K--LRDD--EIKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|281356806|ref|ZP_06243297.1| excinuclease ABC, B subunit [Victivallis vadensis ATCC BAA-548]
 gi|281316933|gb|EFB00956.1| excinuclease ABC, B subunit [Victivallis vadensis ATCC BAA-548]
          Length = 671

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/672 (48%), Positives = 451/672 (67%), Gaps = 18/672 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++   Y P+GDQP AIAQLL     +++ Q LLGVTGSGKTFT+A  IE + RP +
Sbjct: 1   MGIFKLHAPYAPAGDQPQAIAQLLDNFKRQQRYQTLLGVTGSGKTFTLANAIEKLDRPVL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLYSEFK FFP NAVEYF+SYYDYY PE+Y+P+TDTYI K++SINE I++
Sbjct: 61  VLSHNKTLAAQLYSEFKAFFPENAVEYFISYYDYYLPESYIPQTDTYIAKDASINENIEK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SL+ER D IVV+SVSCIYG+GS + Y+ + V++++GD++++ E+L  LV  QY
Sbjct: 121 LRLSATASLVERRDVIVVASVSCIYGLGSPDDYADLCVRVEVGDTLDRDEILRRLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   +G FRV GD ++++    +D   R+S FG+++E +     ++G+     + +
Sbjct: 181 GRNDMSPEKGEFRVRGDVVDVYEPQRDDF-IRISFFGDEVESLERRDVVSGKVKTRPKFV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++   H+V P+  +N A   I  E+  R+   EK   L+EAQRL QR+TYD+EM++  G
Sbjct: 240 TLFPCKHFVLPQERINGAADRILAEMAERVAWFEKNNLLVEAQRLYQRVTYDIEMMKEIG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYS YL+ R PG  P  LF++ P D L  +DESHVT+PQ+  MY+ D +RK  L
Sbjct: 300 YCSGIENYSMYLSNRRPGSRPYCLFDFFPPDFLTVIDESHVTLPQLQAMYKADRNRKMVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLP+ ++NRPL+FEE+  L   T+ VSATPG +EL+      VE I+RPTGL+DP
Sbjct: 360 IDHGFRLPTALENRPLQFEEFEQLTGDTVFVSATPGEYELKHSDK-PVELIVRPTGLLDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    QV+DV  EI  A   G R L+T LTK+ +E L +YL E  ++  Y+HSE+ 
Sbjct: 419 VIEVRPLEGQVDDVIGEIRRATAAGERTLVTTLTKKSSERLADYLAELGVKASYLHSELD 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            LER+ ++  LR G FD ++GINLLREG+D+PE  LVAILDADKEGFLRS+ SL+QT GR
Sbjct: 479 ALERVRVLNKLRDGDFDCVIGINLLREGIDLPEVALVAILDADKEGFLRSERSLVQTAGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN + +VILYAD +T S++  ID+T  RR+KQ+E+NK HNI P+++++     I  I+
Sbjct: 539 AARNKDGRVILYADNLTPSMKGLIDQTNARRKKQMEYNKLHNITPETIRKGRSLTIGEIV 598

Query: 738 ---------------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                          L D   T+ S D   L LS    +A +  L  +M  AA+ L FE 
Sbjct: 599 STGSDKQKSKLRMPKLADTMFTD-STDLGSLGLSAADQEALIAELTGEMLAAAEALEFER 657

Query: 783 AARIRDEIKRLK 794
           AA +RD+IK L+
Sbjct: 658 AADLRDQIKALQ 669


>gi|332665062|ref|YP_004447850.1| UvrABC system protein B [Haliscomenobacter hydrossis DSM 1100]
 gi|332333876|gb|AEE50977.1| UvrABC system protein B [Haliscomenobacter hydrossis DSM 1100]
          Length = 673

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/662 (50%), Positives = 453/662 (68%), Gaps = 13/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AIA+L   +++ E+ Q+LLGVTGSGKTFT+A VI  + RP +V+ 
Sbjct: 3   FQLVSKYSPTGDQPLAIAKLTDSLNAGERTQVLLGVTGSGKTFTIANVIANVNRPTLVLT 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLY E + FFP NAVEYFVSYYDYYQPEAY+  +DTYIEK+  INEQ+D++R 
Sbjct: 63  HNKTLTAQLYGELQEFFPDNAVEYFVSYYDYYQPEAYLSVSDTYIEKDLLINEQVDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT +LL  R D I+V+SVSCIYG+G+ E Y   I++++ G  + +   L  LV+  Y R
Sbjct: 123 RATSNLLSGRRDIIIVASVSCIYGMGNPEDYKSGIIRIQKGQVISRNAFLYKLVESLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +I   R TFRV GD+++I   ++ D  +R+  FG++I+EI      TG++I  +    I
Sbjct: 183 TEIEFKRATFRVRGDTVDINLPYV-DYGYRIKFFGDEIDEIEMIEIETGKRIDRMNDAAI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + Y+ P+   N  ++ I++EL  +    E+EGRLLEA+R+ +R  +DLEM++  G C
Sbjct: 242 FPANLYIAPKDRQNMIIRQIEDELHDQEKYFEREGRLLEAKRIHERTLFDLEMIKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +ENYSR+  GR  G  P  L +Y PED LL +DESHVTIPQI GMY GD  RK +L E
Sbjct: 302 NGVENYSRFFDGRMVGTRPFCLLDYFPEDYLLVIDESHVTIPQIRGMYGGDRARKLSLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS MDNRPL F E+  +    I VSATPG +E EQ  G++VEQ+IRPTGL+DPP+
Sbjct: 362 HGFRLPSAMDNRPLNFTEFEGMFSQVIFVSATPGDYEFEQTGGVVVEQLIRPTGLLDPPI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI     +  R+L+T LTKRMAE+LT+YL + NI++RY+HSEV T+
Sbjct: 422 EVRPSLNQIDDLLEEIQQRIAREERVLVTTLTKRMAEELTKYLAKLNIKIRYIHSEVDTM 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+RDLRLG FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL QT GRAA
Sbjct: 482 ERVEILRDLRLGGFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNDRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PIL 737
           RN N  VI YAD IT S+Q  IDET RRR  Q+ +N++  I P++V +   E+++   IL
Sbjct: 542 RNSNGLVIFYADKITDSMQRTIDETERRRVIQMAYNEERGITPKTVFKSKEEILNQRSIL 601

Query: 738 LEDAATT-------NISIDAQQLS--LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                T+       NI+I A  L   +++ + +       ++M  AA  L+F  AA++RD
Sbjct: 602 DVRGKTSQAYIEPENITIAADPLVSYMTRDQLEKLASETERKMKQAAKELDFITAAQMRD 661

Query: 789 EI 790
           E+
Sbjct: 662 EL 663


>gi|325280315|ref|YP_004252857.1| UvrABC system protein B [Odoribacter splanchnicus DSM 20712]
 gi|324312124|gb|ADY32677.1| UvrABC system protein B [Odoribacter splanchnicus DSM 20712]
          Length = 669

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/666 (49%), Positives = 457/666 (68%), Gaps = 18/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI QL++G+ S    Q+LLGVTGSGKTFT+A VI  + RP ++++
Sbjct: 3   FKLTSEFQPTGDQPEAIRQLIQGLQSGRSSQVLLGVTGSGKTFTVANVINEIHRPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYGEFKSFFPENAVEYFVSYYDYYQPEAYLPTTDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             T SLL  R D IVVSSVSC+YG+    ++   +  LK G ++ +  LL  LV   Y  
Sbjct: 123 RTTASLLSGRRDVIVVSSVSCLYGMADPRAFGSNVTHLKRGMTISRNVLLRRLVDALYAN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            +I   RG FR  G++++IFP+    + VA+R+  + + I+ IS F P+TGQ I + + +
Sbjct: 183 NEIEFKRGCFRAKGETVDIFPAIETYDGVAYRIEFWDDVIDRISSFNPVTGQSIGSQDEL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + +VT + T+  A+  I ++L+ +L  L++ G+ +EA+RLE+R+ YD+EM+   G
Sbjct: 243 DIYPANLFVTDKATIAHALVEIGQDLQDQLAYLKEIGKFMEAKRLEERVKYDMEMIRELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR  G  P  L +Y PED L+ +DESHVT+PQI  MY GD  RK TL
Sbjct: 303 YCPGIENYSRYFDGRKAGVRPFCLLDYFPEDFLMVIDESHVTLPQIRAMYGGDHARKLTL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLP+  DNRPL F+E+      TI +SATP  +ELE+ +GIIVEQIIRPTG+ DP
Sbjct: 363 VDYGFRLPAAFDNRPLTFDEFESKTGQTIYISATPADYELEKSEGIIVEQIIRPTGIPDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EI  ++ Q++ + +EI        R L+T LTKRMAE+L++YL    I+ +Y+HS+V 
Sbjct: 423 VIEIVPSKNQIDHLVNEIQQRIDLRERTLVTTLTKRMAEELSKYLDRIGIKCQYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++I+ +LR G  DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TIERVKILENLRKGIIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ KVI+YAD +T+S+Q  IDET  RREKQL +N++H+I P+    +I +  D  L
Sbjct: 543 AARNVDGKVIMYADQVTRSMQETIDETNYRREKQLRYNEEHHIVPR----QIYKSTDAAL 598

Query: 738 LEDAATTNISIDAQQLSL---------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            +D  T+   ++ + L L         SK + +  ++  +  M  AA  L+F EAAR+RD
Sbjct: 599 TQD--TSKAYVEEEHLHLVADPVVAYMSKPEIEKMIQKTKAAMQKAAKELDFIEAARLRD 656

Query: 789 EIKRLK 794
           E+ +L+
Sbjct: 657 EMFQLE 662


>gi|227875382|ref|ZP_03993523.1| excision endonuclease subunit B [Mobiluncus mulieris ATCC 35243]
 gi|227843936|gb|EEJ54104.1| excision endonuclease subunit B [Mobiluncus mulieris ATCC 35243]
          Length = 743

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/613 (53%), Positives = 446/613 (72%), Gaps = 9/613 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y P+GDQP AIA+L + I++ E+  +LLG TG+GKT T A +IE++QRP +V+ 
Sbjct: 18  FQVISNYQPAGDQPQAIAELAERINAGEQDVVLLGATGTGKTATTAWLIESIQRPTLVLE 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++++R+RH
Sbjct: 78  PNKTLAAQLTAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEVERLRH 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ E Y    + L  G  + + +L+   V  QY R 
Sbjct: 138 SATNSLLTRRDVVVVSSVSCIYGLGTPEEYVSRGIHLSRGMEIGRDDLIRRFVGMQYNRN 197

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD+I+I P + E++  RV  FG++I+ ++  +P+TG+ +  V+ I ++
Sbjct: 198 DVDFTRGNFRVRGDTIDIIPMY-EELGVRVEFFGDEIDTLAVLHPVTGEVLHEVDEIYVF 256

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  AM  I+ E++ R      +G+LLE QRL  R TYDLEM+   G C 
Sbjct: 257 PASHYVAGPERMERAMAGIEAEMESRCKWFHDQGKLLEEQRLRMRTTYDLEMMRQIGICA 316

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR PGEPP TL +Y P+D LL +DESHVT+PQI GM+ GD  RK TL ++
Sbjct: 317 GIENYSLHIDGRQPGEPPHTLLDYFPDDFLLVIDESHVTVPQIGGMFEGDMSRKRTLVDF 376

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+++E+      T+ +SATPG +EL +  G+ VEQIIRPTGLVDP + 
Sbjct: 377 GFRLPSALDNRPLKWDEFQARIGQTVYLSATPGDYELGRSDGV-VEQIIRPTGLVDPKIV 435

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ +EI +  ++  R+L+T LTKRMAEDL++YL ER I+V Y+HS+V TL 
Sbjct: 436 VKPVEGQIDDLMEEIRVRVERDERVLVTTLTKRMAEDLSQYLAERGIKVEYLHSDVDTLR 495

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G FDVLVGINLLREGLD+PE  LVAILDADK+GFLRS  SLIQTIGRAAR
Sbjct: 496 RVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSTKSLIQTIGRAAR 555

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD ++ S++ AIDET RRR KQL  N++H I+P+ +++KI +V D +  ED
Sbjct: 556 NVHGEVHMYADAVSDSMRAAIDETERRRAKQLAFNQEHGIDPKPLQKKISDVTDMLARED 615

Query: 741 AATTNISIDAQQL 753
                  ID +QL
Sbjct: 616 -------IDTEQL 621


>gi|332673914|gb|AEE70731.1| excision endonuclease subunit UvrB [Helicobacter pylori 83]
          Length = 663

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/662 (48%), Positives = 456/662 (68%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I  + +P ++M
Sbjct: 8   LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTLIM 67

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 68  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 127

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 128 LSAAISLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 187

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 188 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVML 247

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 248 YAASQFAVGSERLNLAIKSIEDELTLRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 307

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 308 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 367

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  +  + EQIIRPTG
Sbjct: 368 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSKNNVAEQIIRPTG 424

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMH
Sbjct: 425 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 484

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 485 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 544

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK H+I P++V   + E +
Sbjct: 545 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEEL 604

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D      ++   ++  S++  +  +K L K+M   A NL+FEEA R+RDEI +L
Sbjct: 605 K--LRDDEVKIAKALKKDKIPKSER--EKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL 660

Query: 794 KS 795
           ++
Sbjct: 661 RT 662


>gi|307700874|ref|ZP_07637899.1| excinuclease ABC, B subunit [Mobiluncus mulieris FB024-16]
 gi|307613869|gb|EFN93113.1| excinuclease ABC, B subunit [Mobiluncus mulieris FB024-16]
          Length = 743

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/613 (53%), Positives = 445/613 (72%), Gaps = 9/613 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y P+GDQP AIA+L + I++ E+  +LLG TG+GKT T A +IE++QRP +V+ 
Sbjct: 18  FQVISNYQPAGDQPQAIAELAERINAGEQDVVLLGATGTGKTATTAWLIESIQRPTLVLE 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++++R+RH
Sbjct: 78  PNKTLAAQLTAEFRELLPKNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEVERLRH 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ E Y    + L  G  + + +L+   V  QY R 
Sbjct: 138 SATNSLLTRRDVVVVSSVSCIYGLGTPEEYVSRGIHLSRGMEIGRDDLIRRFVGMQYNRN 197

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD+I+I P + E++  RV  FG++I+ ++  +P+TG+ +  V+ I ++
Sbjct: 198 DVDFTRGNFRVRGDTIDIIPMY-EELGVRVEFFGDEIDTLAVLHPVTGEVLHEVDEIYVF 256

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  AM  I+ E++ R      +G+LLE QRL  R TYDLEM+   G C 
Sbjct: 257 PASHYVAGPERMERAMAGIEAEMEQRCRWFHDQGKLLEEQRLRMRTTYDLEMMRQIGICA 316

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR PGEPP TL +Y P+D LL +DESHVT+PQI GM+ GD  RK TL ++
Sbjct: 317 GIENYSLHIDGRQPGEPPHTLLDYFPDDFLLVIDESHVTVPQIGGMFEGDMSRKRTLVDF 376

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+++E+      T+ +SATPG +EL +  G+ VEQIIRPTGLVDP + 
Sbjct: 377 GFRLPSALDNRPLKWDEFQARIGQTVYLSATPGDYELGRSDGV-VEQIIRPTGLVDPKIV 435

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ +EI +  ++  R+L+T LTKRMAEDL++YL ER I+V Y+HS+V TL 
Sbjct: 436 VKPVEGQIDDLMEEIRVRVERDERVLVTTLTKRMAEDLSQYLAERGIKVEYLHSDVDTLR 495

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G FDVLVGINLLREGLD+PE  LVAILDADK+GFLRS  SLIQTIGRAAR
Sbjct: 496 RVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSTKSLIQTIGRAAR 555

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD ++ S++ AIDET RRR KQL  N++H I+P+ +++KI +V D +  ED
Sbjct: 556 NVHGEVHMYADAVSDSMRAAIDETERRRAKQLAFNQEHGIDPKPLQKKISDVTDMLARED 615

Query: 741 AATTNISIDAQQL 753
                  ID +QL
Sbjct: 616 -------IDTEQL 621


>gi|269977363|ref|ZP_06184336.1| excinuclease ABC subunit B [Mobiluncus mulieris 28-1]
 gi|269934666|gb|EEZ91227.1| excinuclease ABC subunit B [Mobiluncus mulieris 28-1]
          Length = 743

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/613 (53%), Positives = 445/613 (72%), Gaps = 9/613 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y P+GDQP AIA+L + I++ E+  +LLG TG+GKT T A +IE++QRP +V+ 
Sbjct: 18  FQVISNYQPAGDQPQAIAELAERINAGEQDVVLLGATGTGKTATTAWLIESIQRPTLVLE 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++++R+RH
Sbjct: 78  PNKTLAAQLTAEFRELLPKNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEVERLRH 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ E Y    + L  G  + + +L+   V  QY R 
Sbjct: 138 SATNSLLTRRDVVVVSSVSCIYGLGTPEEYVSRGIHLSRGMEIGRDDLIRRFVGMQYNRN 197

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD+I+I P + E++  RV  FG++I+ ++  +P+TG+ +  V+ I ++
Sbjct: 198 DVDFTRGNFRVRGDTIDIIPMY-EELGVRVEFFGDEIDTLAVLHPVTGEVLHEVDEIYVF 256

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  AM  I+ E++ R      +G+LLE QRL  R TYDLEM+   G C 
Sbjct: 257 PASHYVAGPERMERAMAGIEAEMESRCKWFHDQGKLLEEQRLRMRTTYDLEMMRQIGICA 316

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR PGEPP TL +Y P+D LL +DESHVT+PQI GM+ GD  RK TL ++
Sbjct: 317 GIENYSLHIDGRQPGEPPHTLLDYFPDDFLLVIDESHVTVPQIGGMFEGDMSRKRTLVDF 376

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+++E+      T+ +SATPG +EL +  G+ VEQIIRPTGLVDP + 
Sbjct: 377 GFRLPSALDNRPLKWDEFQARIGQTVYLSATPGDYELGRSDGV-VEQIIRPTGLVDPKIV 435

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ +EI +  ++  R+L+T LTKRMAEDL++YL ER I+V Y+HS+V TL 
Sbjct: 436 VKPVEGQIDDLMEEIRVRVERDERVLVTTLTKRMAEDLSQYLAERGIKVEYLHSDVDTLR 495

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G FDVLVGINLLREGLD+PE  LVAILDADK+GFLRS  SLIQTIGRAAR
Sbjct: 496 RVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSTKSLIQTIGRAAR 555

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD ++ S++ AIDET RRR KQL  N++H I+P+ +++KI +V D +  ED
Sbjct: 556 NVHGEVHMYADAVSDSMRAAIDETERRRAKQLAFNQEHGIDPKPLQKKISDVTDMLARED 615

Query: 741 AATTNISIDAQQL 753
                  ID +QL
Sbjct: 616 -------IDTEQL 621


>gi|188527894|ref|YP_001910581.1| excinuclease ABC subunit B [Helicobacter pylori Shi470]
 gi|188144134|gb|ACD48551.1| excinuclease ABC subunit B [Helicobacter pylori Shi470]
          Length = 658

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/662 (48%), Positives = 454/662 (68%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +P ++M
Sbjct: 3   LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANTNKPTLIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKCLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYTGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  Q  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK H+I P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D      ++   ++  S++  +  +K L K+M   A NL+FEEA  +RDEI +L
Sbjct: 600 K--LRDDEVKIAKALKKDKIPKSER--EKIIKELDKKMRECAKNLDFEEAMHLRDEIAKL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|308063898|gb|ADO05785.1| excinuclease ABC subunit B [Helicobacter pylori Sat464]
          Length = 658

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/662 (48%), Positives = 453/662 (68%), Gaps = 13/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++ Y P+GDQP AI  L K +      Q L+GVTGSGKT+TMA +I    +P ++M
Sbjct: 3   LFDLKSPYPPAGDQPQAIEALTKSLKDNNHYQTLVGVTGSGKTYTMANIIANTNKPTLIM 62

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R+R
Sbjct: 63  SHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLR 122

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y R
Sbjct: 123 LSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++ +
Sbjct: 183 NEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVML 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C
Sbjct: 243 YAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+ TG+ P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ 
Sbjct: 303 KGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSV 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L EYGFRLPS +DNRPL+F+E+   NC     + VSATP   ELE  Q  + EQIIRPTG
Sbjct: 363 LVEYGFRLPSALDNRPLKFDEFIHKNC---QFLFVSATPNKLELELSQKNVAEQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMH
Sbjct: 420 LLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 480 SEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK H+I P++V   + E +
Sbjct: 540 TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEEL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              L +D      ++   ++  S++  +  +K L K+M   A NL+FEEA  +RDEI +L
Sbjct: 600 K--LRDDEVKIAKALKKDKIPKSER--EKIIKELDKKMRECAKNLDFEEAMHLRDEIAKL 655

Query: 794 KS 795
           ++
Sbjct: 656 RT 657


>gi|330836908|ref|YP_004411549.1| Excinuclease ABC subunit B [Spirochaeta coccoides DSM 17374]
 gi|329748811|gb|AEC02167.1| Excinuclease ABC subunit B [Spirochaeta coccoides DSM 17374]
          Length = 711

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/673 (49%), Positives = 453/673 (67%), Gaps = 11/673 (1%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
            N   ++  F +   +  SGDQ  AI  L +G+ + E    L GVTGSGKT+TMAK+IE 
Sbjct: 29  GNVRGEVIPFSVVAPFGTSGDQQQAIDALSEGLIAGEDRLTLKGVTGSGKTYTMAKIIEK 88

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +QRP ++++ NK LAAQLY EFK+FFP+NAVEYFVS YDYYQPEAYVP  D YIEK++ I
Sbjct: 89  VQRPTLILSHNKTLAAQLYREFKSFFPNNAVEYFVSTYDYYQPEAYVPGKDLYIEKDADI 148

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           N++IDR+R SA+ SL+ER D IVVS+VSCIYG+ +  S   M     +G   +    L  
Sbjct: 149 NDEIDRLRLSASFSLMERRDVIVVSTVSCIYGLANPVSLRDMTKTYAVGMQFDHTRELEQ 208

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV+ QY+R D  + RG FRV GD IEI PS++E+ A R+S+  ++I  I  F P++G+K 
Sbjct: 209 LVRMQYERNDAILKRGNFRVRGDVIEICPSYMEN-AVRISLEWDEISSIQWFDPVSGEKQ 267

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
            +V T  +Y    +V P+  +  A+  IK+E++ +       G+ LEA+R++ R+ YD+E
Sbjct: 268 ESVPTFTLYPAKQFVMPKEQVVKAIGRIKDEMEAQYEHFITSGKPLEAERIKTRVEYDME 327

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           ML+  G C  IENYSR L+ R  GE P  L +Y P + L F+DESHVT+PQ+  MY GD 
Sbjct: 328 MLQEIGYCSGIENYSRPLSNRKEGERPAVLLDYFPPNFLTFIDESHVTLPQVGAMYEGDR 387

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK  L EYGFRLPS +DNRPL+F+E+  +    + VSATPG  EL +   + VEQ+IRP
Sbjct: 388 SRKMNLVEYGFRLPSALDNRPLKFDEFTHVVGQRVFVSATPGKLELAESSRV-VEQVIRP 446

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP + +R    Q+E++Y EI     +  R+L+T LTK+M+EDLT+YL    ++VRY
Sbjct: 447 TGLLDPEISVRPTEGQMENLYGEIRSCIAKKQRVLVTTLTKKMSEDLTDYLTNLGLKVRY 506

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HSE++T+ER+EI+RDLRLG FDVLVGINLLREGLD+PE  LVAILDADK GFLRS+TSL
Sbjct: 507 LHSEIETIERVEILRDLRLGVFDVLVGINLLREGLDLPEVALVAILDADKIGFLRSETSL 566

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARN   +VI+YAD ++ ++  AI ET RRR  Q+E+NK H I P ++ + I +
Sbjct: 567 IQTIGRAARNAEGRVIMYADRMSDAMSTAIKETNRRRALQMEYNKAHGITPTTIVKAIQD 626

Query: 732 VIDPILLEDAATT-----NISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           +   I+ E   T      +I+I   + + L  K+ K ++K L ++M   A NL FE AA 
Sbjct: 627 I---IIREKTETLEIQKEDIAIRKSRFNLLEAKERKKYIKELEQEMLECAKNLEFERAAM 683

Query: 786 IRDEIKRLKSSPY 798
           +RDEI  ++   +
Sbjct: 684 LRDEITAIREGRF 696


>gi|89897859|ref|YP_514969.1| excinuclease ABC subunit B [Chlamydophila felis Fe/C-56]
 gi|89331231|dbj|BAE80824.1| excision nuclease helicase subunit B [Chlamydophila felis Fe/C-56]
          Length = 656

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/656 (51%), Positives = 441/656 (67%), Gaps = 11/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++ D+ P GDQPAAIA+L +G+ ++ + Q+LLG TGSGKTFT+A V+  + RP +V+A
Sbjct: 3   FELRADFAPCGDQPAAIAKLTQGVRNQAQFQVLLGTTGSGKTFTIANVVANINRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYF+SYYDYYQPEAY+ R DTYIEK   IN +ID++R 
Sbjct: 63  HNKTLAAQLYQEFKEFFPNNAVEYFISYYDYYQPEAYIARNDTYIEKSLLINSEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSSVSCIYGIGS ++Y+ M ++L+I     +  L S LVK  Y+  
Sbjct: 123 SATRSILERRDTLIVSSVSCIYGIGSPDNYASMALELEIEKEYPRSLLTSQLVKMNYQAS 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            +   R TFR  G  I+IFP++  D A R++ F + +  I    PLT   + +V ++ IY
Sbjct: 183 PVA-QRATFRERGSVIDIFPAYESDRAIRLAFFNDTLTSIEYNDPLTMMPLESVASVIIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ R++      R +E  RL QR  +D+EM++ TG C+
Sbjct: 242 PGSHYVTPEAVREQAIRSIREELEERMLFFHD--RPIEQDRLFQRTIHDIEMIKETGFCK 299

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ T   PG PP  L +Y PED LL +DESH T+PQ+  MYRGD  RK +L EY
Sbjct: 300 GIENYSRHFTKTPPGSPPACLLDYFPEDFLLVIDESHQTLPQMRAMYRGDLSRKQSLVEY 359

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  EL + +G +VEQIIRPTG+ DP  E
Sbjct: 360 GFRLPSAYDNRPLTYEEARKYFHNVIYVSATPGEMELNESRGHVVEQIIRPTGIPDPIPE 419

Query: 561 IRSARTQVEDVYDEI--NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           IR A  QV+D+ +EI   L+  Q  +IL+  +TK++AED+  +L E +I   Y+HS ++T
Sbjct: 420 IRPATGQVDDLLEEIRKRLSKSQE-KILVISITKKLAEDIAAFLSELDIAAAYLHSGIET 478

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER  I+ DLRLG  DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS +SLIQ  GRA
Sbjct: 479 AERTRILTDLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRA 538

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV  KVI YAD  T+SI+  + ET RRR+ QLE+NK HNI PQ + + I+   +PI  
Sbjct: 539 ARNVEGKVIFYADQKTQSIEQTLKETERRRKIQLEYNKAHNITPQPIIKAILA--NPIPQ 596

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                T    D  ++ LS K+ +  +K     M  AA    F+EAA+ RD++K  K
Sbjct: 597 GRKQETQ---DNLKMPLSTKELEKLIKKYENLMQQAAHEFRFDEAAKYRDKMKAAK 649


>gi|325971742|ref|YP_004247933.1| UvrABC system protein B [Spirochaeta sp. Buddy]
 gi|324026980|gb|ADY13739.1| UvrABC system protein B [Spirochaeta sp. Buddy]
          Length = 689

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/681 (49%), Positives = 452/681 (66%), Gaps = 19/681 (2%)

Query: 130 SINNHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185
           SI N   D++F    F++ + Y PSGDQ  AI +L  G+   +  Q L GVTGSGKT+TM
Sbjct: 14  SITNVHGDVSFQNKPFRVVSAYDPSGDQAQAIEKLSAGLVQGDVYQTLKGVTGSGKTYTM 73

Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           AK+IE +QRP +V++ NK LAAQLY EFK+FFP NAVEYFVS YDYYQPEAYVP  D YI
Sbjct: 74  AKIIEQVQRPTLVLSHNKTLAAQLYREFKSFFPDNAVEYFVSTYDYYQPEAYVPGKDLYI 133

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
           EK++ IN +IDR+R SA+ SL+ER D IVV++VSCI+G+ +  S   M+     GD  E 
Sbjct: 134 EKDADINVEIDRLRLSASFSLMERRDVIVVATVSCIFGLANPVSVRDMVHTFTKGDQFEH 193

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
            ++L  LV+ QY+R D  + RG FRV GD IEI PS+LE+ A R+S+  ++I  I  F P
Sbjct: 194 HDVLEKLVRMQYERNDAILKRGAFRVKGDIIEICPSYLEN-AVRISIDWDEIASIQWFDP 252

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           ++G+K   V++  +Y    +V P   +  A+  I+ E++ ++      G+ LEA+R++ R
Sbjct: 253 VSGEKQEMVDSYTLYPAKQFVMPPEQVKAAIGKIRSEMEDQVEYFNSMGKPLEAERIKTR 312

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
           + YDLEMLE  G C  IENYSR L+ R  GE P  L +Y P D + F+DESHVT+PQ+  
Sbjct: 313 VEYDLEMLEEIGYCSGIENYSRPLSDRKVGERPAVLLDYFPPDFVTFIDESHVTLPQVGA 372

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MY GD  RK  L  YGFRLPS +DNRPL+  E+  +    I VSATPG  EL      IV
Sbjct: 373 MYEGDRSRKLNLVNYGFRLPSALDNRPLKAVEFEQVVQQRIYVSATPGKTEL-GLSSQIV 431

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           EQ+IRPTGL+DP +E+RS+  Q+E++Y EI     +  R+L+T LTK+M+EDLT+Y    
Sbjct: 432 EQVIRPTGLLDPQIEVRSSEGQMENLYGEIRSVIAKKQRVLVTTLTKKMSEDLTDYFASL 491

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            ++VRY+HSE+ T+ER+EI+RDLRLG FD+LVGINLLREGLD+PE  L+AILDADK GFL
Sbjct: 492 GLKVRYLHSEIDTIERVEILRDLRLGVFDILVGINLLREGLDLPEVSLIAILDADKIGFL 551

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS TSLIQ IGRAARN   +VI+YAD ++ +++ +I ET RRR  Q  +N++H I P ++
Sbjct: 552 RSTTSLIQIIGRAARNSEGRVIMYADRMSSAMEESIGETNRRRAIQTAYNEEHGITPTTI 611

Query: 726 KEKIMEVIDPILLEDAATTNISIDAQQLSLSK--------KKGKAHLKSLRKQMHLAADN 777
            + + ++     LE        I  Q L++ K           K ++K+L K+M  AA N
Sbjct: 612 VKAVQDI-----LEREREVTKEIQKQDLTILKSGYNLFNANDRKKYVKALEKEMLEAAKN 666

Query: 778 LNFEEAARIRDEIKRLKSSPY 798
           L FE AA IRDEI  ++   +
Sbjct: 667 LEFERAAIIRDEIAAIREGQF 687


>gi|32267047|ref|NP_861079.1| excinuclease ABC subunit B [Helicobacter hepaticus ATCC 51449]
 gi|81835926|sp|Q7VFX7|UVRB_HELHP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|32263099|gb|AAP78145.1| excinuclease ABC [Helicobacter hepaticus ATCC 51449]
          Length = 658

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/658 (50%), Positives = 445/658 (67%), Gaps = 7/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + P+GDQP AI ++ + IH+  +   L+GVTGSGKT+TMA +I  +  P ++M 
Sbjct: 4   FILDSQFAPAGDQPQAIQKITQFIHNGAQYSTLVGVTGSGKTYTMANIIANLNIPTLIMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEF+ FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSINE ++R+R 
Sbjct: 64  HNKTLAAQLYSEFRGFFPKNHVEYFISHFDYYQPEAYIPRRDLFIEKDSSINEDLERLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL  +D IV++SVS  YG+G+   Y  MI + +IG    QK LL  LV   Y R 
Sbjct: 124 SATTSLLAYDDIIVIASVSANYGLGNPAEYLTMIHKFEIGQEEAQKTLLLKLVDMGYTRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV G+ I+IFP++ E    R+  FG++IE I  F  L    +  +E+  +Y
Sbjct: 184 DTIFERGNFRVNGEVIDIFPAYNEKEFIRIEFFGDEIERIGVFDALERTALTQLESFVLY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A + ++     L +A+K I+ EL+ RL E   + + +E QRL+ R  +DLEM++ +G C+
Sbjct: 244 AANQFIVGAQRLQSAIKNIEVELENRLEEFVSQDKQIEYQRLKTRTEFDLEMIKESGICK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDS---LLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENY+R+LTG+  GE P +L +Y  +     LL VDESHV++PQ  GMY GD  RK  L
Sbjct: 304 GIENYARHLTGKKAGETPYSLLDYFEQKGKPYLLIVDESHVSLPQFGGMYAGDRSRKEVL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPLRF+E+    P  + VSATP   ELE  Q  I EQIIRPTGL+DP
Sbjct: 364 VEYGFRLPSALDNRPLRFDEFINKAPHFLFVSATPAQKELELSQEHIAEQIIRPTGLLDP 423

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
             E+R A   V D+YDEI     +  R+L+T LTK+MAE+L++Y  E  I+VRYMHS++ 
Sbjct: 424 LYEVRDADNAVLDLYDEIKARIAKNQRVLITTLTKKMAEELSKYYAELGIKVRYMHSDID 483

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER  +IR LRLG+FDVL+GINLLREGLD+PE  L+AI+DADKEGFLRS+TSLIQT+GR
Sbjct: 484 AIERNHLIRALRLGEFDVLIGINLLREGLDLPEVSLIAIMDADKEGFLRSETSLIQTMGR 543

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  KVILYA  IT S+Q A + T  RR KQ E N+ HNI P+SV+  + + +    
Sbjct: 544 AARNVEGKVILYAKKITGSMQRAFEVTDYRRTKQEEFNRIHNITPKSVQRNVEQELK--- 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +E +  + +   A +  + K + ++ +K L  +MH AA  L FEEAAR+RDEI R+++
Sbjct: 601 IESSGLSRLYEKASK-KIPKSERESIIKELNIKMHQAAKALEFEEAARLRDEIARIRT 657


>gi|187251936|ref|YP_001876418.1| excinuclease ABC subunit B [Elusimicrobium minutum Pei191]
 gi|186972096|gb|ACC99081.1| Excinuclease ABC, B subunit [Elusimicrobium minutum Pei191]
          Length = 665

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/664 (49%), Positives = 451/664 (67%), Gaps = 18/664 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + PSGDQP AI  L + I + +  Q LLGVTGSGKT+TMA +I     PA++M+
Sbjct: 4   FKLKAPFSPSGDQPQAIKNLCQNIKNGQTRQTLLGVTGSGKTYTMANIIAQTDMPALIMS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK+LAAQLY+EFK FFP N+VEYF+SYYDYYQPEAY+P+TDTYIEK+SSINE I++MR 
Sbjct: 64  PNKVLAAQLYAEFKQFFPENSVEYFISYYDYYQPEAYIPQTDTYIEKDSSINEHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT SLL RND IV++SVS IY IGS +++++M + +K G  + +  + S L+K QY+R 
Sbjct: 124 KATTSLLTRNDVIVIASVSSIYNIGSPDNFAEMCLYVKKGIPLNRVAVTSLLIKNQYERS 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++    G FR+ G +I+I P + E    R+ M    +  + + +P+TG  I  V+   IY
Sbjct: 184 EMEFTPGKFRLRGGNIDILPPYRE-TGIRIEMGPQAVNALYKIHPITGDVIEEVDEEFIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V     ++ A+K I EE + R+ ELE  G+ LEA RL+QR  YD+EML+ TG C+
Sbjct: 243 PAKHFVVKESDIDRAIKEINEEKEGRVKELEAIGKPLEAYRLKQRTEYDMEMLKQTGFCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYI--PEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
            IENYSR L GR PG  P  LF+Y    E+ L+F+DESHV +PQ+ GMY GD  RK  L 
Sbjct: 303 GIENYSRPLAGREPGSRPDCLFDYFRKHENFLVFIDESHVAVPQVRGMYNGDRSRKQMLI 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS +DNRPL+F+E+  + P+T+ VSATPG +EL      IVEQ+IRPTGLVDP 
Sbjct: 363 DFGFRLPSALDNRPLKFDEFEKILPSTVFVSATPGPYELTVSANNIVEQVIRPTGLVDPQ 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V I     Q+  +  +I    ++G R L+  LTK+ AEDLT +  E+ I+ RY+HS++++
Sbjct: 423 VSIHPTAGQIGHLISKIEERIKKGQRSLVLSLTKKTAEDLTVFFDEKGIKARYLHSDIES 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER+EI++  + G FDVLVGINLLREGLDIP+ GLVAIL AD EGFLR++T+LIQ  GRA
Sbjct: 483 LERVEILQKFKQGVFDVLVGINLLREGLDIPQVGLVAILGADNEGFLRNETTLIQISGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN++ +V+LYAD  T SI+ A+ E  RRREKQ  +NK+H+I PQS+ +  +E  D    
Sbjct: 543 ARNIDGEVVLYADRKTDSIKNALAEMDRRREKQTAYNKEHHITPQSIIKAEIEFKD---F 599

Query: 739 EDAATT-------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           E+ A T       N +   +  +L K      +K + +QM  AADNLNFE A  +RD + 
Sbjct: 600 ENTAKTEGLRALHNFTDIPKPDNLPK-----MIKEIERQMKDAADNLNFELAVDLRDRML 654

Query: 792 RLKS 795
            LKS
Sbjct: 655 ELKS 658


>gi|90578521|ref|ZP_01234332.1| excinuclease ABC subunit B [Vibrio angustum S14]
 gi|90441607|gb|EAS66787.1| excinuclease ABC subunit B [Vibrio angustum S14]
          Length = 656

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/621 (51%), Positives = 433/621 (69%), Gaps = 2/621 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP A+A+L+  I      Q L GVTGSGKTFTMA +I  +QRP +++A
Sbjct: 6   FILHSAYPPSGDQPEALARLIGNIQDGVTHQTLQGVTGSGKTFTMANMIHRLQRPTLILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K FFP NAVEYFVSYYDYYQPE Y+P +D +I K+S++N+Q++R+R 
Sbjct: 66  HNKTLAAQLYSEMKRFFPENAVEYFVSYYDYYQPEVYIPGSDRFIRKDSAVNQQLERLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+SL+ER D IVV+SVS IYG+G    Y  + + L +G ++++++ +  LV  QY R 
Sbjct: 126 STTKSLIERKDVIVVASVSAIYGLGDPAQYRAVQIPLSVGMTIDREDFIQRLVALQYSRC 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  I R TFRV G+  +I+P+  E  A RV MF + IE++  F P+TG+ + +++   + 
Sbjct: 186 ERTIERATFRVHGEIFDIYPADSESKAIRVVMFDDTIEQLQWFDPITGKVLGDIDHYFVS 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y   +  L  A   I++EL+MR+ EL  E R++EA RL +R T+D+EM++  G C 
Sbjct: 246 PKTLYAASKDKLMKASIEIQKELEMRVTELNNENRIVEAARLYERTTHDIEMMQQLGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS YL  R+P  PP TL +Y+PED LLF+DESHV IPQIS MYR D  RK TL +Y
Sbjct: 306 GLENYSCYLNDRDPTLPPTTLLDYLPEDGLLFIDESHVMIPQISAMYRSDVSRKETLIDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPL F+E+  ++P T+ VSATPG +EL++ Q  + EQIIRPTGL+DP VE
Sbjct: 366 GFRLPSAKNNRPLMFKEFEQIKPQTVFVSATPGEYELKKSQQHVTEQIIRPTGLLDPIVE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQ +D+  EI+   Q+  R+L+T LTK+ AE L E + E+ I+V Y+HSEVKT +
Sbjct: 426 VRPLATQTDDLLKEISERTQKDERVLVTTLTKKSAEALYELMVEQGIKVSYIHSEVKTEQ 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR GKFDVL+GINLLREGLDIPE  LVA+L AD  GFLRS  +LIQ IGRAAR
Sbjct: 486 RVEIIDDLRAGKFDVLIGINLLREGLDIPEASLVAVLHADHAGFLRSTLALIQIIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILL 738
           N N K ILYAD IT ++Q A+ E+ +RRE+Q E+NK HNI P S K K  ++ +  P   
Sbjct: 546 NANGKAILYADKITPAMQQAMAESQQRRERQQEYNKAHNITPASSKRKKADINNNEPAQH 605

Query: 739 EDAATTNISIDAQQLSLSKKK 759
                +N+S   QQ++ ++K+
Sbjct: 606 SVEFCSNLSELCQQITATEKE 626


>gi|306818695|ref|ZP_07452417.1| excision endonuclease subunit UvrB [Mobiluncus mulieris ATCC 35239]
 gi|304648381|gb|EFM45684.1| excision endonuclease subunit UvrB [Mobiluncus mulieris ATCC 35239]
          Length = 743

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/613 (53%), Positives = 444/613 (72%), Gaps = 9/613 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y P+GDQP AI +L + I++ E+  +LLG TG+GKT T A +IE++QRP +V+ 
Sbjct: 18  FQVISNYQPAGDQPQAIKELAERINAGEQDVVLLGATGTGKTATTAWLIESIQRPTLVLE 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++++R+RH
Sbjct: 78  PNKTLAAQLTAEFRELLPKNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEVERLRH 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVSSVSCIYG+G+ E Y    + L  G  + + +L+   V  QY R 
Sbjct: 138 SATNSLLTRRDVVVVSSVSCIYGLGTPEEYVSRGIHLSRGMEIGRDDLIRRFVGMQYNRN 197

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD+I+I P + E++  RV  FG++I+ ++  +P+TG+ +  V+ I ++
Sbjct: 198 DVDFTRGNFRVRGDTIDIIPMY-EELGVRVEFFGDEIDTLAVLHPVTGEVLHEVDEIYVF 256

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  AM  I+ E++ R      +G+LLE QRL  R TYDLEM+   G C 
Sbjct: 257 PASHYVAGPERMERAMAGIEAEMESRCKWFHDQGKLLEEQRLRMRTTYDLEMMRQIGICA 316

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR PGEPP TL +Y P+D LL +DESHVT+PQI GM+ GD  RK TL ++
Sbjct: 317 GIENYSLHIDGRQPGEPPHTLLDYFPDDFLLVIDESHVTVPQIGGMFEGDMSRKRTLVDF 376

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+++E+      T+ +SATPG +EL +  G+ VEQIIRPTGLVDP + 
Sbjct: 377 GFRLPSALDNRPLKWDEFQARIGQTVYLSATPGDYELGRSDGV-VEQIIRPTGLVDPKIV 435

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ +EI +  ++  R+L+T LTKRMAEDL++YL ER I+V Y+HS+V TL 
Sbjct: 436 VKPVEGQIDDLMEEIRVRVERDERVLVTTLTKRMAEDLSQYLAERGIKVEYLHSDVDTLR 495

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G FDVLVGINLLREGLD+PE  LVAILDADK+GFLRS  SLIQTIGRAAR
Sbjct: 496 RVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSTKSLIQTIGRAAR 555

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD ++ S++ AIDET RRR KQL  N++H I+P+ +++KI +V D +  ED
Sbjct: 556 NVHGEVHMYADAVSDSMRAAIDETERRRAKQLAFNQEHGIDPKPLQKKISDVTDMLARED 615

Query: 741 AATTNISIDAQQL 753
                  ID +QL
Sbjct: 616 -------IDTEQL 621


>gi|330719341|ref|ZP_08313941.1| excinuclease ABC subunit B [Leuconostoc fallax KCTC 3537]
          Length = 603

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/602 (52%), Positives = 430/602 (71%), Gaps = 6/602 (0%)

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           M+ NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++
Sbjct: 1   MSHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKL 60

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R+SAT +L ER+D I+V+SVS I+G+G    Y   +V L+ G    + +LL  L+  Q++
Sbjct: 61  RNSATSALFERDDVIIVASVSSIFGLGDPHQYQDHVVSLRNGLEYGRDQLLRDLIDIQFQ 120

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RG FRV GD +EIFP+  ++ A R+  FG++I+ I EF+ LTG+ +  ++ I 
Sbjct: 121 RNDIDFQRGRFRVRGDVVEIFPASSDENALRIEFFGDEIDRIREFHALTGEVVAELDHIA 180

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  +H++T    +N A+  IK EL  +L   E+EG+LLEAQRL+QR  YDL M+E  G 
Sbjct: 181 IFPATHFMTNDAIMNRAIGTIKVELDEQLKVFEQEGKLLEAQRLKQRTEYDLAMMEEMGY 240

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
              IENYSR++ GR PGEPP TL ++ P+D L+ VDESHVT+PQ+ GMY GD  RK  L 
Sbjct: 241 TNGIENYSRHMDGRKPGEPPFTLLDFFPDDFLIVVDESHVTMPQVRGMYNGDKARKQQLV 300

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDP 557
           +YGFRLPS +DNRPL  +E+       I +SATPG +E E+  +  I +QIIRPTGL+DP
Sbjct: 301 DYGFRLPSALDNRPLTLQEFEKHVNQIIYMSATPGVYESERVPEKYIAQQIIRPTGLLDP 360

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    Q++D+  EIN   ++  R+ +T LTKRMAEDLT+YL + +I+V Y+H+++K
Sbjct: 361 EIEVRPVMGQIDDLVGEINQRVEKDERVFITTLTKRMAEDLTDYLKDLSIKVAYLHADIK 420

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRDLRLGK+DVL+GINLLREG+D+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 421 TLERTEIIRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIGR 480

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N  VI+YAD++T S+Q A+DET RRRE Q  +N KH I P+++K+ I ++I   +
Sbjct: 481 AARNENGHVIMYADSVTDSMQRAMDETRRRREIQTAYNTKHGITPRTIKKDIRDLIS--V 538

Query: 738 LEDAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             +      +ID  +++   L K +  + L ++  QM  AA  L+FEEAA +RD I  LK
Sbjct: 539 SHETNNKEETIDLTKVAFKDLPKDEQTSILNNMDGQMRAAAKALDFEEAANLRDLIMELK 598

Query: 795 SS 796
           +S
Sbjct: 599 TS 600


>gi|327404594|ref|YP_004345432.1| UvrABC system protein B [Fluviicola taffensis DSM 16823]
 gi|327320102|gb|AEA44594.1| UvrABC system protein B [Fluviicola taffensis DSM 16823]
          Length = 674

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/671 (48%), Positives = 460/671 (68%), Gaps = 18/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +++ P+GDQP AI QL+KGI      Q LLGVTGSGKTFTMA VI+   +P ++++
Sbjct: 3   FQLVSEFKPTGDQPEAIKQLVKGIDDGHFAQTLLGVTGSGKTFTMANVIQQTGKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+N+VEYFVSYYDYYQPEAY+P TDT+IEK+  IN++I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPNNSVEYFVSYYDYYQPEAYLPVTDTFIEKDMQINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT +LL  R D IV++SVSCIYGIG+   ++  I+ + +G    + + L  LV+  Y R
Sbjct: 123 SATSALLSGRRDVIVIASVSCIYGIGNPNEFANSIIPIHVGQLFPRNKFLLRLVENLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +    RGTFRV GD+++I  ++  D A RV  +G++IE I    P    +I   + I+I
Sbjct: 183 TEAEFKRGTFRVKGDTVDIHLAY-ADYALRVEFWGDEIERIRTIDPENNSEIEIFQEIQI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +V+   T   A+  I E++ +++   ++E ++LEA+RLE+R +YD+EM+   G C
Sbjct: 242 YPANIFVSSPETTRKAIDQIGEDMVIQVENFKREKKILEAKRLEERTSYDMEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY   R PG  P  L +Y P+D L+ VDESHVT+PQI  MY GD  RK  L +
Sbjct: 302 SGIENYSRYFDQREPGTRPFCLLDYFPDDYLMIVDESHVTMPQIRAMYGGDRARKINLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFR+ + MDNRPL F+E+  L    + VSATP  +ELEQ +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRIQAAMDNRPLMFDEFQTLINQIVYVSATPADYELEQSEGVVVEQLIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +E+ L  ++  R L+T LTKRMAE+L +YL +  I  RY+HS++ T+
Sbjct: 422 EVRPSLNQIDDLIEEMQLRIEKDERTLVTTLTKRMAEELQKYLDKLGIACRYIHSDIDTI 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R LRLG+FDVL+G+NLLREGLD+PE  LVAI+DADKEGFLR++ SL+QT+GRAA
Sbjct: 482 ERVEILRQLRLGEFDVLIGVNLLREGLDLPEVSLVAIIDADKEGFLRNERSLVQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RN+N +VI+YAD +TKS++  I ET RRR  Q+E+N+ H + P ++  K  EVI      
Sbjct: 542 RNINGRVIMYADKMTKSMERTISETERRRAMQIEYNEAHGLVPTALN-KSTEVILKSTKV 600

Query: 734 ---DPILLEDAAT---TNISIDAQQLSLSKKKGKAHLKSL---RKQMHLAADNLNFEEAA 784
              DP       T       + A + +++ K  +   K++   RKQM  AA +L+F EAA
Sbjct: 601 ADGDPETRSQKYTPYEAGTGLFAAEPTVNYKDPEELEKAIGAKRKQMEKAAKDLDFIEAA 660

Query: 785 RIRDEIKRLKS 795
           R+RDE+  L++
Sbjct: 661 RLRDELFELQA 671


>gi|294674053|ref|YP_003574669.1| excinuclease ABC subunit B [Prevotella ruminicola 23]
 gi|294472062|gb|ADE81451.1| excinuclease ABC, B subunit [Prevotella ruminicola 23]
          Length = 679

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/671 (47%), Positives = 463/671 (69%), Gaps = 18/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI QL +G+   ++ Q+LLGVTGSGKTFTMA VI    RP ++++
Sbjct: 4   FILTSEYKPTGDQPEAIRQLTEGLDRGDRAQVLLGVTGSGKTFTMANVIAQHNRPTLILS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVE++VSYYDYYQPEAY+P TDTYIEK+ +IN++IDR+R 
Sbjct: 64  HNKTLAAQLYEEMKGFFPQNAVEFYVSYYDYYQPEAYLPTTDTYIEKDLAINDEIDRLRL 123

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  +LL  RND +VVSSVSCIYG+GS  +  + +++LK G  +++  LL  LV   Y R
Sbjct: 124 SAVSNLLSGRNDVVVVSSVSCIYGMGSPVALQENVIELKKGQILDRNALLRKLVAALYVR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ + RG FRV GD+++I  ++ E V  R++ + ++I+ I E   +T  ++ + +  ++
Sbjct: 184 NDLDLQRGNFRVKGDTVDIAMAYSE-VVLRITFWDDEIDAIEEMDAVTFDRLASFDEYRL 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +   N A+  I+++L  +++  E+ G  ++AQR+++R+ YD+EM++  G C
Sbjct: 243 YPANLFMTSQEQTNIAIHQIQDDLMKQVLYFEEIGDNIKAQRIKERVEYDMEMIKELGHC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  GE P  L ++ P+D LL +DESHV++PQIS MY GD  RK  L E
Sbjct: 303 SGIENYSRYFDGRQAGERPYCLLDFFPDDYLLIIDESHVSVPQISAMYGGDRSRKQNLVE 362

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPL+FEE+       I VSATP  +EL + +G++VEQ+IRPTGL+DP +
Sbjct: 363 YGFRLPAAFDNRPLKFEEFQQEVNQVIYVSATPADYELNEAEGVVVEQVIRPTGLLDPEI 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ DEI   + +G R+L+T LTKRMAE+LTEYL   +++  Y+HS+V TL
Sbjct: 423 EVRPSENQIDDLMDEILTRSHRGERVLITTLTKRMAEELTEYLLNHSVKTAYIHSDVATL 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 483 DRVKILSDLRQGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV-------------- 725
           RNVN KVI+YADTIT S+QL IDET RRR KQ+++N++H+I P+ +              
Sbjct: 543 RNVNGKVIMYADTITASMQLTIDETLRRRLKQMKYNEEHHITPKQIVKNLSFNALQKENR 602

Query: 726 --KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
              +++M           A   ++ D  +  +++ + +  ++   ++M  AA  L+F +A
Sbjct: 603 ADTKELMRNFSMAAENGDAGVRVAADPIEERMTRPQMEKLIEETTRKMKEAAKQLDFLQA 662

Query: 784 ARIRDEIKRLK 794
           A+ RDEI RL+
Sbjct: 663 AQYRDEIVRLQ 673


>gi|258648590|ref|ZP_05736059.1| excinuclease ABC subunit B [Prevotella tannerae ATCC 51259]
 gi|260851372|gb|EEX71241.1| excinuclease ABC subunit B [Prevotella tannerae ATCC 51259]
          Length = 677

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/670 (48%), Positives = 469/670 (70%), Gaps = 21/670 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ ++Y P+GDQP AI  L  G  +    Q+LLGVTGSGKTFT+A VI+ + +P +
Sbjct: 1   MSAFKLHSEYQPTGDQPEAIEALTTGAKAGTPAQVLLGVTGSGKTFTIANVIKNLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY+EFK+FFP NAVEY+VSYYDYYQPEAY+P +D YIEK+ +INE+IDR
Sbjct: 61  VLSHNKTLAAQLYTEFKDFFPENAVEYYVSYYDYYQPEAYIPSSDLYIEKDMAINEEIDR 120

Query: 258 MRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +R +AT +LL  R D IVVSSVSCIYG+G+  ++ + ++ LK+G S+   +LL  L+   
Sbjct: 121 LRLAATSALLSGRKDVIVVSSVSCIYGMGNPAAFYENVIDLKVGSSIGVTQLLQKLIASL 180

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D+    G FRV GD+++I+ ++ E++  RV+ +G+D++ I E   L+G +    E 
Sbjct: 181 YTRNDVAPKSGNFRVNGDTVDIYLAYTEEII-RVTFWGDDVDTIEEIDALSGYRTATFEE 239

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
            K+Y  + ++T + T   A++ I+++L  ++ + E+EG++LEA+RL +R++YD+EM+   
Sbjct: 240 YKVYPANLFLTSKETQELAIRSIQDDLVEQVQKFEEEGKMLEAKRLSERVSYDIEMIREL 299

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRY  GR+PG  P  L ++ PED L+ +DESHVT+PQI  M+ GD HRK  
Sbjct: 300 GHCSGIENYSRYFDGRSPGTRPYCLLDFFPEDFLIVIDESHVTVPQIRAMWGGDRHRKVN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLP+ +DNRPL F+E++ +    I +SATP  +EL++ +G+IVEQIIRPTGL+D
Sbjct: 360 LVNYGFRLPAALDNRPLTFDEFHQMAKQVIYISATPDDYELQESEGVIVEQIIRPTGLLD 419

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           PP+E+R     ++D+ +EI    ++  R+L+T LTK+M+E+LT+YL +  I+  Y+HS++
Sbjct: 420 PPIEVRPNDYPIDDLMEEIRQCIEREERVLVTTLTKKMSEELTDYLLKNGIKTAYIHSDI 479

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER+ I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  S+ QT G
Sbjct: 480 DTLERVRIMEDLRKGTYDVLVGVNLLREGLDLPEVALVAILDADKEGFLRSTRSMTQTAG 539

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-----ME 731
           RAARNVN +VI+YA+ IT S+Q  IDET RRR KQ+ +N++H++ P+ +K+KI      E
Sbjct: 540 RAARNVNGRVIMYANRITTSMQQTIDETNRRRAKQIAYNEQHHLKPRQIKKKIKTNQLTE 599

Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKK------GKAHL-----KSLRKQMHLAADNLNF 780
           + +    E + TT    D +Q S  K        GK          L KQM  AA++L+F
Sbjct: 600 LSEARQSEKSTTT---YDLRQTSTPKAAEDQAVYGKKETYEERHARLEKQMKAAAEHLDF 656

Query: 781 EEAARIRDEI 790
             AA++RDE+
Sbjct: 657 VLAAQLRDEL 666


>gi|110596901|ref|ZP_01385191.1| excinuclease ABC, B subunit [Chlorobium ferrooxidans DSM 13031]
 gi|110341588|gb|EAT60048.1| excinuclease ABC, B subunit [Chlorobium ferrooxidans DSM 13031]
          Length = 683

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/668 (49%), Positives = 447/668 (66%), Gaps = 14/668 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            +++ + Y P+GDQP AI  L +G+ +    Q LLGVTGSGKTFT++ VI  + +P +VM
Sbjct: 6   LYRLVSPYSPTGDQPKAIEALSEGVLTGNPYQTLLGVTGSGKTFTISNVIARVNKPVLVM 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK LAAQLY E K FFP NAVEYF+SYYD+YQPEAY+P  D YI K+  IN++I+R+R
Sbjct: 66  SHNKTLAAQLYGELKQFFPDNAVEYFISYYDFYQPEAYLPALDKYIAKDLRINDEIERLR 125

Query: 260 HSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
             AT SLL  R D IVVSSVSCIYG+GS E +   I++L+ G   ++   L  L+   Y 
Sbjct: 126 LRATSSLLSGRKDVIVVSSVSCIYGLGSPEDWKAQIIELRSGMEKDRDLFLKELIALHYV 185

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI    G FRV GD I++ P+H E++A RV  FGN+IE +  F   +G+ +       
Sbjct: 186 RDDIDPAPGKFRVRGDIIDLVPAH-EELALRVEFFGNEIESLQTFDIHSGEVLGVDPYAF 244

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY    +V     L  AM  I+ EL  +L     E RLLEA+RLE+R  YDLEM++  G 
Sbjct: 245 IYPARQFVAEEAKLKEAMFAIENELAGQLNWFRAENRLLEARRLEERTRYDLEMMKELGY 304

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GRN GE P  L +Y PE+ L+ +DESHVT+PQI GMY GD  RK  L 
Sbjct: 305 CSGIENYSRHLSGRNAGERPYCLLDYFPEEYLVVIDESHVTLPQIRGMYGGDRSRKTILV 364

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPS +DNRPLRFEE+  + P  I VSATP   EL +  G++VEQ++RPTGL+DPP
Sbjct: 365 EHGFRLPSALDNRPLRFEEFEEMAPQVICVSATPSEHELTRSGGVVVEQLVRPTGLLDPP 424

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R  + Q++++  EI L   +G + L+  LTKRMAEDL ++  +  IR RY+HSE+K+
Sbjct: 425 VEVRPVKGQIDNLLAEIRLHTAKGNKALVMTLTKRMAEDLHDFFRKTGIRSRYLHSEIKS 484

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LERI+I+R+LR+G  DVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL+Q  GRA
Sbjct: 485 LERIQILRELRVGDIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRA 544

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV   V+LYAD +T+SI+  +DET RRR  Q  +N++H I P+S+ + + +++D   +
Sbjct: 545 ARNVEGFVVLYADVVTRSIREVLDETARRRTIQQRYNEEHGIVPRSIIKSVDQILDTTGV 604

Query: 739 EDAATT------NISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
            DA          +    +++      S++  +G A    LR +M  AA ++ +E+AA +
Sbjct: 605 ADAEERYRRKRFGLEPKPERMLAGLLESMTPAEGYAMAAELRIEMQEAAVHMEYEKAAYL 664

Query: 787 RDEIKRLK 794
           RDEI +L+
Sbjct: 665 RDEIAKLE 672


>gi|15791178|ref|NP_281002.1| excinuclease ABC subunit B [Halobacterium sp. NRC-1]
 gi|169236934|ref|YP_001690134.1| excinuclease ABC subunit B [Halobacterium salinarum R1]
 gi|22257071|sp|Q9HMT9|UVRB_HALSA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|10581796|gb|AAG20482.1| excision nuclease chain B [Halobacterium sp. NRC-1]
 gi|167728000|emb|CAP14788.1| excinuclease ABC subunit B [Halobacterium salinarum R1]
          Length = 689

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/663 (48%), Positives = 444/663 (66%), Gaps = 7/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P+GDQP AIA+L+ G     + Q LLGVTGSGKT T++ V+E +Q+P +V+A
Sbjct: 19  FRVEAPFDPAGDQPDAIAELVAGYEQGAQQQTLLGVTGSGKTNTVSWVVEELQQPTLVIA 78

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF++ FP NAVEYFVSYY+YYQPEAYV +TD YIEK++SIN++IDR+RH
Sbjct: 79  HNKTLAAQLYEEFRSLFPDNAVEYFVSYYNYYQPEAYVEQTDKYIEKDASINDEIDRLRH 138

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL R+D IVV+SVS IYG+G   +Y +M ++++ G S+ + +LL+ LV   Y R 
Sbjct: 139 SATRSLLTRDDVIVVASVSAIYGLGDPRNYEEMSLRVERGQSIGRDQLLAKLVDLNYDRN 198

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   +GTFRV GD++E++P +      RV  +G++I+ +++  PL G        +  +
Sbjct: 199 DVDFTQGTFRVRGDTVEVYPMYGR-YPVRVEFWGDEIDRMAKLDPLEGTVESEEPAVLFH 257

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HY  P   +  A++ I+ ++  R+   E+ G ++ AQR+E+R T+DLEM+   G C 
Sbjct: 258 PAEHYSVPDAEMEQAIERIRTDMHERVRHFERTGDMVAAQRIEERTTFDLEMMAEAGYCS 317

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS YL+ R  G+ P TL +Y P+D L  +DESH T+PQI G Y GD  RK +L + 
Sbjct: 318 GIENYSVYLSDREVGDAPYTLLDYFPDDFLTVIDESHRTVPQIKGQYEGDKSRKDSLVDN 377

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+  DNRPL F E+      T+ VSATPG  E  Q    +VEQI+RPT LVDP + 
Sbjct: 378 GFRLPTAYDNRPLTFAEFADKTDRTLYVSATPGDHERAQSAN-VVEQIVRPTHLVDPDIS 436

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I  A  QVED+ D I+    +  R+L+T LTKRMAEDLTEYL E  + V YMH E  TLE
Sbjct: 437 IADATGQVEDLMDRIDERVARDERVLVTTLTKRMAEDLTEYLEEAGVAVEYMHDETDTLE 496

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E++R LRLG++DVLVGINLLREGLDIPE  LVAILDAD++GFLRS+TSL+QT+GRAAR
Sbjct: 497 RHELVRGLRLGEYDVLVGINLLREGLDIPEVSLVAILDADQQGFLRSETSLVQTMGRAAR 556

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +V+LYAD  T ++Q AIDET RRR  Q   N+ H   P ++++ + ++  P     
Sbjct: 557 NVNGEVVLYADETTDAMQAAIDETQRRRRIQRAFNEDHGTTPTTIEKAVGDMNLP----- 611

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
            A T+ +  A      +++    ++ L  +M  AA NL FE AA IRD ++ L+ +    
Sbjct: 612 GAETDTADVAGDAPSDEQEAALLVEDLEARMEDAASNLEFELAADIRDRMRELREAFDLD 671

Query: 801 GLD 803
           G D
Sbjct: 672 GGD 674


>gi|198274586|ref|ZP_03207118.1| hypothetical protein BACPLE_00738 [Bacteroides plebeius DSM 17135]
 gi|198272033|gb|EDY96302.1| hypothetical protein BACPLE_00738 [Bacteroides plebeius DSM 17135]
          Length = 680

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/666 (50%), Positives = 456/666 (68%), Gaps = 19/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AIAQL +GI      Q LLGVTGSGKTFT+A VI+ + +P ++++
Sbjct: 3   FELISDYQPTGDQPEAIAQLTEGIRQHVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFKNFFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYGEFKNFFPHNAVEYYVSYYDYYQPEAYIPSTDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT SLL  R D IVVSSVSCIYG+G+   +   ++++K G  +++   L  LV   Y R
Sbjct: 123 AATSSLLSGRKDVIVVSSVSCIYGMGNPADFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++IF ++ + V  RV  + ++I+ I E  P++G +I   E  KI
Sbjct: 183 NDIELNRGNFRVKGDTVDIFLAYTDSV-LRVMFWDDEIDGIEEIDPVSGHRIGTFEEYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T + +   A+  I+++L  ++   E+ G+  EA+RL +R+TYD+EML   G C
Sbjct: 242 YPANLFMTTKESTLRAIHQIEDDLTKQVAYFEEIGKPYEAKRLYERVTYDMEMLRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PG  P  L ++ PED L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGREPGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL FEE+  +    I VSATP  +EL+Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLTFEEFQQMAKQVIYVSATPAEYELQQSEGIVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ +EI    ++  R+L+T LTKRMAE+LTEYL    IR  Y+HS+V+TL
Sbjct: 422 DVRPSLNQIDDLMEEIQQRIEREERVLVTTLTKRMAEELTEYLLNNGIRCAYIHSDVETL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERI+I+ +LR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERIKIMDELREGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP----------------Q 723
           RNVN KVI+YAD IT S++  IDET RRREKQL +N+ H I P                Q
Sbjct: 542 RNVNGKVIMYADRITDSMRQTIDETNRRREKQLAYNEAHGITPKQITRSRTNALLDIEKQ 601

Query: 724 SVKEKIMEVIDP-ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
           S +E   +  +P    E  A  + + D     ++K + +  ++  RK M  AA  L+F E
Sbjct: 602 SSQENSSKPKEPRAYTETEAQLHAAADPVVQYMTKGQLQKSIEQTRKLMQEAAKKLDFIE 661

Query: 783 AARIRD 788
           AA+ RD
Sbjct: 662 AAQYRD 667


>gi|300521564|gb|ADK25993.1| UvrB [Candidatus Nitrososphaera gargensis]
          Length = 659

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/658 (49%), Positives = 455/658 (69%), Gaps = 15/658 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           +F   +  + PSGDQP AI QL++G+    + Q LLGVTGSGKT+T+A VI    +  +V
Sbjct: 7   SFALAKDAFPPSGDQPEAIEQLVRGVQKGGR-QTLLGVTGSGKTYTIANVIARTNKNTLV 65

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           ++ NK LAAQLY+EFK FFP N V YFVS+YDYYQPE+Y+P+TDTYIEK++ +NE+I++M
Sbjct: 66  ISHNKTLAAQLYAEFKEFFPENNVGYFVSFYDYYQPESYIPQTDTYIEKDTEVNEKIEKM 125

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R  AT  L+     I+VS+VSCIY +GS + + +  + L  G  +++K L+ +L++ +Y+
Sbjct: 126 RLEATAMLMSGEPTIIVSTVSCIYSLGSPKEWEKSAITLTKGMEIDRKILIHNLIEARYE 185

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ ++ G FR  GD+I+I P + +D+  RVS+FG++IE IS    ++ +K+R+V  +K
Sbjct: 186 RNDMSLMPGNFRAKGDTIDIIPGYSDDII-RVSVFGDEIERISIHDHVSMKKLRDVNAVK 244

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+   HY+T   + N+A++ IK EL+  L  L  E   LE QRL QR  YDLEM+E  G 
Sbjct: 245 IFPAKHYITDDDSRNSALESIKRELENWLPNLPSE---LERQRLAQRTKYDLEMIEELGY 301

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L GR PG+PP  L ++  +D LL +DESHVT+PQ+ GMY GD  RK  L 
Sbjct: 302 CSGIENYSRHLDGRAPGQPPFCLLDFFGDDFLLVIDESHVTLPQLHGMYNGDHTRKKMLI 361

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+FEE+       I VSATPG +EL+    +  EQ++RPTGLVDP 
Sbjct: 362 DYGFRLPSSYDNRPLKFEEFEKYLRNVIFVSATPGPYELKSSWQV-AEQLVRPTGLVDPK 420

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VEIR  + Q+ED+  EI   A++  R L+T LTKRMAEDL E+L +  +RVRY+HSE++ 
Sbjct: 421 VEIRPTKNQMEDLIKEIKNRAKKNQRTLVTTLTKRMAEDLAEFLAKNEVRVRYLHSEIEG 480

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER ++IR LRLG+FD LVGINLLREGLDIPE  LVAILDADKEGFLR+ TSLIQT GRA
Sbjct: 481 LERTQLIRQLRLGEFDALVGINLLREGLDIPEVSLVAILDADKEGFLRNTTSLIQTFGRA 540

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN++  VI+Y+D  T+S++ AI+ET RRR+KQLE+NKKH I P+++ + I E    I  
Sbjct: 541 ARNLDGAVIMYSDHSTESMKQAIEETERRRKKQLEYNKKHKIKPRTIVKPIPESTKEI-- 598

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            D +    S+  Q L     + +A +K         A+ L+FE+A   R+++ +++ +
Sbjct: 599 GDMSVETKSMTRQDLVKLAVETEATMKRF-------AEELDFEKAIMFREKLSKIRKA 649


>gi|21674365|ref|NP_662430.1| excinuclease ABC subunit B [Chlorobium tepidum TLS]
 gi|81790952|sp|Q8KC79|UVRB_CHLTE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|21647543|gb|AAM72772.1| excinuclease ABC, subunit B [Chlorobium tepidum TLS]
          Length = 684

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/667 (48%), Positives = 442/667 (66%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y P+GDQP+AI  L  G+   ++ Q LLGVTGSGKTFT++ VI  + RP +V++
Sbjct: 11  FKLESPYGPTGDQPSAIKALTDGVLRGDRWQTLLGVTGSGKTFTVSNVIAQVNRPTLVLS 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFPHNAVEYF+SYYD+YQPEAY+P  D YI K+  IN++I+R+R 
Sbjct: 71  HNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPSLDKYIAKDLKINDEIERLRL 130

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT +LL  RND IVVSSVSCIYG+GS E +   IV+L+ G  +++ E L  LV   Y R
Sbjct: 131 RATSALLSGRNDVIVVSSVSCIYGLGSPEDWMAQIVELRQGMELDRDEFLQRLVALHYFR 190

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ +  G FRV GD I++ P H E++A R+  FG++I+ I  F P +G+ I   E   I
Sbjct: 191 DDVDLSPGRFRVRGDVIDLVPGH-EELALRIEFFGSEIDSIHTFDPKSGEIIGRDEYAFI 249

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +V     L  AM  I+ EL  RL  L  E +L+EAQRLE+R  YDLEM++  G C
Sbjct: 250 YPARQFVADSEKLEVAMLAIENELAERLNALRAEEKLVEAQRLEERTRYDLEMMKELGYC 309

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENY+R++ GR PGE P  L +Y PED L+ VDESHVT+PQI GMY GD  RK  L E
Sbjct: 310 SGIENYARHIAGRKPGERPWCLLDYFPEDFLVVVDESHVTLPQIRGMYGGDRSRKTVLVE 369

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEE+  + P  I VSATP + EL +  G++VEQ+IRPTGL+DP +
Sbjct: 370 HGFRLPSALDNRPLRFEEFEEMVPQVICVSATPSAHELMRSGGVVVEQLIRPTGLLDPQI 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+     Q++ +   I     +G + L+  LTKRM+EDL  Y  +  +R +Y+HSE+K+L
Sbjct: 430 EVHPVAGQIDHLLARIRERIAKGQKSLVLTLTKRMSEDLHAYFRKLGLRSQYLHSEIKSL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+R+LR G  +VLVG+NLLREGLD+PE  LVAILDADKEGFLR  TSL+Q  GRAA
Sbjct: 490 ERMQILRELRAGDIEVLVGVNLLREGLDLPEVALVAILDADKEGFLRDATSLMQIAGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV   V+ YAD IT S++  +DET RRR  Q E+N+KH I P+S+ + + +V++   + 
Sbjct: 550 RNVEGLVLFYADKITDSMREVLDETERRRRIQREYNEKHGIEPRSIIKSVDQVLNTTSVA 609

Query: 740 DA------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           DA                + +     S+S+      +  +  +M  AA+  ++E+AA +R
Sbjct: 610 DAEERYRRKRLGLQKRPELELRGVLDSMSRSDVMLMVAEMNAEMQKAAEQTDYEKAAYLR 669

Query: 788 DEIKRLK 794
           DEI  L+
Sbjct: 670 DEILMLQ 676


>gi|315926794|gb|EFV06168.1| Excinuclease ABC B subunit [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 657

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/661 (50%), Positives = 441/661 (66%), Gaps = 14/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+
Sbjct: 2   LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R 
Sbjct: 62  HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR 
Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y
Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+
Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +YGFRLPS +DNRPL F+E+   NC     + VSATP   ELE  +  I  QI+RPTGL
Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS
Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT
Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKKHNI P SVK  I E   
Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKHNITPTSVKRHIEES-- 596

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             L  +     I    ++L       +A L K LRKQM  AA  L FE+AA IRDEI +L
Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654

Query: 794 K 794
           +
Sbjct: 655 R 655


>gi|55379581|ref|YP_137431.1| excinuclease ABC subunit B [Haloarcula marismortui ATCC 43049]
 gi|74579266|sp|Q5UYC8|UVRB_HALMA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|55232306|gb|AAV47725.1| UvrABC system protein B [Haloarcula marismortui ATCC 43049]
          Length = 686

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/654 (51%), Positives = 441/654 (67%), Gaps = 7/654 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AI QL  G       Q LLGVTGSGKT T++ V+E +Q+P +V+A
Sbjct: 19  FRVDAPFDPAGDQPEAIEQLASGYRQGMDRQTLLGVTGSGKTNTVSWVVEEIQQPTLVIA 78

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+  FP NAVEYFVSYYDYYQPEAYV +TDT+I+K++SIN++IDR+RH
Sbjct: 79  HNKTLAAQLYEEFRELFPDNAVEYFVSYYDYYQPEAYVEQTDTFIDKDASINDEIDRLRH 138

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL R+D IVV+SVS IYG+G   +Y  M + L++G  +E+ ELL  LV   Y+R 
Sbjct: 139 SATRSLLTRDDVIVVASVSAIYGLGDPRNYIDMSLSLEVGQEIERDELLGQLVDLNYERN 198

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   +GTFRV GD++EI+P +    A RV  +G++I+ + +  PL G+         ++
Sbjct: 199 DVDFTQGTFRVRGDTLEIYPMYAR-YALRVEFWGDEIDRMLKVDPLEGEVKSEEPAALLH 257

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HY  P   L  A+  I++ L  R+   E++G  + AQR+E+R T+D+EM++ TG C 
Sbjct: 258 PAEHYSIPEQRLQRAIDEIEKLLDQRISYFERQGNHVAAQRIEERTTFDIEMMQETGYCS 317

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L+ R  GE P TL +Y P+D L  VDESH T+PQI G + GD  RK +L E 
Sbjct: 318 GIENYSVHLSDRETGEAPYTLLDYFPDDFLTVVDESHQTLPQIRGQFEGDKSRKESLVEN 377

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+  DNRPL FEE+      T+ VSATPG +E +     +VEQI+RPT LVDP VE
Sbjct: 378 GFRLPTAFDNRPLTFEEFEEKTDQTLYVSATPGDYERDHSDQ-VVEQIVRPTHLVDPAVE 436

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I SA  QVED+ + I+    +  R+L+T LTKRMAEDLTEYL E  + V YMH E  TLE
Sbjct: 437 IASATGQVEDLLERIDDRVDRDERVLVTTLTKRMAEDLTEYLEESGVNVAYMHDETDTLE 496

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E+IR LRLG  DVLVGINLLREGLDIPE  LVAILDAD+EGFLRS+T+L+QT+GRAAR
Sbjct: 497 RHELIRSLRLGDIDVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTLVQTMGRAAR 556

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +V+LYAD  + ++Q AI ET RRR  Q ++N+ H   P ++++++ E   P     
Sbjct: 557 NVNGEVVLYADERSNAMQSAIQETQRRRRIQQQYNEDHGFEPTTIEKEVGETNLP--GSK 614

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             T  IS D    +    +    ++ L ++M  AADNL FE AA IRD I+ L+
Sbjct: 615 TETGGISSDG---ASDADEATRQIEQLEERMQEAADNLEFELAADIRDRIRELR 665


>gi|148926649|ref|ZP_01810330.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845168|gb|EDK22263.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 657

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/661 (50%), Positives = 441/661 (66%), Gaps = 14/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+
Sbjct: 2   LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R 
Sbjct: 62  HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR 
Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y
Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+
Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 302 GIENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +YGFRLPS +DNRPL F+E+   NC     + VSATP   ELE  +  I  QI+RPTGL
Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS
Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT
Sbjct: 479 DIDAIERNEIIRGLRSGAFDILIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E   
Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             L  +     I    ++L       +A L K LRKQM  AA  L FE+AA IRDEI +L
Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654

Query: 794 K 794
           +
Sbjct: 655 R 655


>gi|194334626|ref|YP_002016486.1| excinuclease ABC subunit B [Prosthecochloris aestuarii DSM 271]
 gi|194312444|gb|ACF46839.1| excinuclease ABC, B subunit [Prosthecochloris aestuarii DSM 271]
          Length = 683

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/669 (47%), Positives = 450/669 (67%), Gaps = 14/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++++ Y P GDQP AI  L  G+   E  Q LLGVTGSGKTFTM+ VI    +P +V++
Sbjct: 8   YRLESSYEPMGDQPGAIDALSAGVRDGEPCQTLLGVTGSGKTFTMSNVIARAGKPVLVIS 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFPHNAVEYF+SYYD+YQPEAY+P  D YI K+  INE+I+R+R 
Sbjct: 68  HNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPSMDKYIAKDLRINEEIERLRL 127

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT +LL  R D IVVSSVSCIYG+GS E +   I++L+ G  ++++  L  LV   + R
Sbjct: 128 RATSALLSGRRDVIVVSSVSCIYGLGSPEDWMAQILELRTGMDMDREAFLQRLVDLHFVR 187

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ +  G FRV GD I++ P+H ED A RV  +G++I+ +  F P TG+ I   E   I
Sbjct: 188 DDMELSSGKFRVRGDVIDLVPAHEED-ALRVEFYGSEIDRLQLFNPRTGEIIEEQEYACI 246

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +V  +  L  AM  I+ EL  RL     E RL+EA+RLE+R  YDLEM++  G C
Sbjct: 247 YPARQFVADKARLEAAMLSIENELAGRLNTFRAEDRLVEARRLEERTRYDLEMIKELGYC 306

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +L+GR  GE P  L +Y  +D ++ +DESHV++PQI GMY GD  RK  L E
Sbjct: 307 SGIENYSSHLSGRKAGERPYCLLDYFQDDYMVVIDESHVSLPQIRGMYAGDRSRKTILVE 366

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEE+  + P  I VSATPG +EL + QG++VEQ++RPTGL+DP +
Sbjct: 367 HGFRLPSALDNRPLRFEEFEEVVPQMICVSATPGDYELTRSQGVVVEQLVRPTGLLDPEI 426

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R    Q++++ +EI     +G + L+  +TKRM+EDL ++L +  +R RY+HSE+K+L
Sbjct: 427 TVRPVSGQIDNLLEEIRQNTAKGFKTLVMTITKRMSEDLHDFLRKAGVRSRYLHSEIKSL 486

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERI+I+R+LR G  DVLVG+NLLREGLD+PE  LVAILDADK+GFLR   SL+Q  GRAA
Sbjct: 487 ERIQILRELRAGDVDVLVGVNLLREGLDLPEVALVAILDADKQGFLRDARSLMQIAGRAA 546

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  +V+ YAD IT S++  IDET RRR+ Q + N++H I P+S+ + + +V++   + 
Sbjct: 547 RNVEGRVVFYADRITPSMREVIDETDRRRKVQQQFNEEHGIVPRSIIKSVDQVLNTTSVA 606

Query: 740 DAAT------TNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           DA          +    ++L      +LS ++  +  + L+ +M  AA+++ +E+AA +R
Sbjct: 607 DAEERFRRKRLGLQQKNERLLEGVIDTLSPEELSSMAEDLKCEMQEAAESMEYEKAAWLR 666

Query: 788 DEIKRLKSS 796
           DEI +++ +
Sbjct: 667 DEISKIEHA 675


>gi|205355522|ref|ZP_03222293.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205346756|gb|EDZ33388.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 657

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/661 (50%), Positives = 441/661 (66%), Gaps = 14/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+
Sbjct: 2   LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R 
Sbjct: 62  HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR 
Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y
Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+
Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +YGFRLPS +DNRPL F+E+   NC     + VSATP   ELE  +  I  QI+RPTGL
Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS
Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT
Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E   
Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             L  +     I    ++L       +A L K LRKQM  AA  L FE+AA IRDEI +L
Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654

Query: 794 K 794
           +
Sbjct: 655 R 655


>gi|121612747|ref|YP_001000376.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005322|ref|ZP_02271080.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87249413|gb|EAQ72373.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 657

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/661 (50%), Positives = 441/661 (66%), Gaps = 14/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+
Sbjct: 2   LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R 
Sbjct: 62  HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR 
Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y
Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+
Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 302 GVENYARHLTGLKEGDIPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +YGFRLPS +DNRPL F+E+   NC     + VSATP   ELE  +  I  QI+RPTGL
Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS
Sbjct: 419 LDPLIELKDSDNQVEFLFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT
Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E   
Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             L  +     I    ++L       +A L K LRKQM  AA  L FE+AA IRDEI +L
Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654

Query: 794 K 794
           +
Sbjct: 655 R 655


>gi|283953964|ref|ZP_06371493.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni 414]
 gi|283794569|gb|EFC33309.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni 414]
          Length = 657

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/661 (49%), Positives = 442/661 (66%), Gaps = 14/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ +D+ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+
Sbjct: 2   LELTSDFKPSPDQEKAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R 
Sbjct: 62  HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR 
Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD ++I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y
Sbjct: 182 DNFFDRADFRVQGDIVDIYPAYYEDEVVRLEFFGDELDVMYHYNVLENKKGKDLKRFILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+
Sbjct: 242 PTSQFSVGETRLKQAIKDIKTELNERLACFEHENKLVEHQRLKQRVEFDLEMLTSTGMCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +YGFRLPS +DNRPL F+E+   NC     + VSATP   ELE  +  I  QI+RPTGL
Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS
Sbjct: 419 LDPLIELKDSDNQVEILFDESKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT
Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KV+L+   ITKS+Q A+D T +RR+ Q+ +NKK+NI P SVK  I E   
Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNQRRKLQMAYNKKYNITPTSVKRHIEES-- 596

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             L  +     I    ++L       +A L K LRKQM  AA  L FE+AA +RDEI +L
Sbjct: 597 --LKNEENLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAALRDEINKL 654

Query: 794 K 794
           +
Sbjct: 655 R 655


>gi|283956090|ref|ZP_06373577.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792410|gb|EFC31192.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 657

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/661 (50%), Positives = 441/661 (66%), Gaps = 14/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+
Sbjct: 2   LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R 
Sbjct: 62  HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR 
Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y
Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+
Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +YGFRLPS +DNRPL F+E+   NC     + VSATP   ELE  +  I  QI+RPTGL
Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS
Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT
Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E   
Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPASVKRHIEES-- 596

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             L  +     I    ++L       +A L K LRKQM  AA  L FE+AA IRDEI +L
Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654

Query: 794 K 794
           +
Sbjct: 655 R 655


>gi|193212081|ref|YP_001998034.1| excinuclease ABC subunit B [Chlorobaculum parvum NCIB 8327]
 gi|193085558|gb|ACF10834.1| excinuclease ABC, B subunit [Chlorobaculum parvum NCIB 8327]
          Length = 684

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/667 (49%), Positives = 444/667 (66%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y P+GDQP+AI  L +G+   ++ Q LLGVTGSGKTFT++ VI  + RP +V++
Sbjct: 11  FKLESPYGPTGDQPSAIKALTEGVLRGDRWQTLLGVTGSGKTFTVSNVIAQINRPTLVLS 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFPHNAVEYF+SYYD+YQPEAY+P  D YI K+  IN++I+R+R 
Sbjct: 71  HNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPSMDKYIAKDLKINDEIERLRL 130

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT +LL  RND IVVSSVSCIYG+GS E +   I++L+ G  +++ E L  LV   Y R
Sbjct: 131 RATSALLSGRNDVIVVSSVSCIYGLGSPEDWLAQIIELRQGMEMDRDEFLQMLVSLHYFR 190

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ +  G FRV GD I++ P H E++A R+  FG++I  I  F P TG+ I   E   I
Sbjct: 191 DDVDLSPGRFRVRGDVIDLVPGH-EELALRIEFFGSEIYSIQTFDPKTGEIISRDEYAFI 249

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +V     L TAM  I++EL  RL  L  E +L+EAQRLE+R  YDLEM++  G C
Sbjct: 250 YPARQFVADTEKLETAMLAIEDELAGRLNVLRGEDKLVEAQRLEERTRYDLEMMKELGYC 309

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENY+R++ GR PGE P  L +Y PED L+ VDESHVT+PQI GMY GD  RK  L E
Sbjct: 310 SGIENYARHIAGRKPGERPWCLLDYFPEDYLVVVDESHVTLPQIRGMYGGDRSRKTVLVE 369

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEE+    P  + VSATP   EL + +G++VEQ+IRPTGL+DP +
Sbjct: 370 HGFRLPSALDNRPLRFEEFEEKVPQVLCVSATPAEHELMRSEGVVVEQLIRPTGLLDPQI 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+     Q++ +   +     +G + L+  LTKRM+EDL  Y  +  +R +Y+HSE+K+L
Sbjct: 430 EVHPVAGQIDHLLARVRERIAKGQKSLVLTLTKRMSEDLHAYFRKLGLRSQYLHSEIKSL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+R+LR G  DVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL+Q  GRAA
Sbjct: 490 ERMQILRELRAGDIDVLVGVNLLREGLDLPEVALVAILDADKEGFLRNNKSLMQIAGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV   V+ YAD IT S++  IDET RRR  Q  +N+KH I P+S+ + + +V++   + 
Sbjct: 550 RNVEGLVLFYADKITASMREVIDETERRRRIQQAYNEKHGIEPRSIIKSVDQVLNTTSVA 609

Query: 740 DAA----------TTNISIDAQQL--SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           DA                ++ Q L  +LS+ +    +  +  +M  AA   ++E+AA +R
Sbjct: 610 DAEERYRRKRLGLQKRPELELQGLLDTLSRNEVVKMVAEMNTEMQKAAKETDYEKAAYLR 669

Query: 788 DEIKRLK 794
           DEI  L+
Sbjct: 670 DEILMLE 676


>gi|288799999|ref|ZP_06405458.1| excinuclease ABC subunit B [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288333247|gb|EFC71726.1| excinuclease ABC subunit B [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 678

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/669 (49%), Positives = 466/669 (69%), Gaps = 16/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL  GI + +  Q+LLGVTGSGKTFT+A  I  +++P ++++
Sbjct: 3   FKITSKYKPTGDQPEAIKQLTDGILAGDTAQVLLGVTGSGKTFTIANTIANVKKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +INE ID++R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPKNAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINEDIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  +LL  R D I+VSSVSCIYG+G   +  + I+ ++ G+ +++ + L  LV   Y R
Sbjct: 123 SAVSALLSGRQDVIIVSSVSCIYGMGGPSAMGESIINIQQGEQLDRNDFLRKLVDALYTR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RGTFRV G++I++F ++  D   R++ +  ++E I E   +T ++I +  + +I
Sbjct: 183 NDIDLTRGTFRVKGETIDVFMAY-SDHILRITWWDEEVESIEELDSVTFKRIASFTSYQI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +  +N A+++I+++L  ++   E  G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANIFVTSKDQVNDAIRHIQDDLTDQIAFFESVGDTIKAQRIKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR+PGE P  L ++ P+D LL VDESHVTIPQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRSPGERPYCLLDFFPQDFLLVVDESHVTIPQIRAMYGGDRARKQNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLP+  DNRPLRFEE++ +    I VSATP  +ELE+  G+IVEQIIRPTGL+DP +
Sbjct: 362 FGFRLPAAFDNRPLRFEEFHEMVNQAIYVSATPADYELEESDGVIVEQIIRPTGLLDPLI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R +  Q++D+ DEI    ++  RIL+T LTKRMAE+LT+YL    ++  Y+HS+V TL
Sbjct: 422 IVRPSENQIDDLMDEIIECTKREERILVTTLTKRMAEELTDYLINNGVKTSYIHSDVATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+  LR G+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIMNGLRSGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI+YADTIT+S+Q  IDET RRR  Q+++N++H+I PQ +++ I  ++      
Sbjct: 542 RNVNGKVIMYADTITESMQKTIDETERRRLIQMKYNEEHHITPQQIQKSIKSLLTNDTTN 601

Query: 740 DAATTNISIDAQQLS--------------LSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           +  T + SI   +LS              +SK++ +  ++   + M  AA +L+F +AA+
Sbjct: 602 NNTTKDYSISENELSSNKVMLAADEIVVKMSKEQLRKSIQYTTEMMKQAAKDLDFLQAAQ 661

Query: 786 IRDEIKRLK 794
            RDEI +L+
Sbjct: 662 YRDEILKLQ 670


>gi|284925936|gb|ADC28288.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 657

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/661 (50%), Positives = 441/661 (66%), Gaps = 14/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+
Sbjct: 2   LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R 
Sbjct: 62  HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR 
Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y
Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+
Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 302 GVENYARHLTGLKKGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +YGFRLPS +DNRPL F+E+   NC     + VSATP   ELE  +  I  QI+RPTGL
Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS
Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT
Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E   
Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             L  +     I    ++L       +A L K LRKQM  AA  L FE+AA IRDEI +L
Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654

Query: 794 K 794
           +
Sbjct: 655 R 655


>gi|86151710|ref|ZP_01069924.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|218562319|ref|YP_002344098.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|315124185|ref|YP_004066189.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|14195312|sp|Q9PPM7|UVRB_CAMJE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|85841339|gb|EAQ58587.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|112360025|emb|CAL34817.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|315017907|gb|ADT66000.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 657

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/661 (50%), Positives = 441/661 (66%), Gaps = 14/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+
Sbjct: 2   LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R 
Sbjct: 62  HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR 
Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y
Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+
Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +YGFRLPS +DNRPL F+E+   NC     + VSATP   ELE  +  I  QI+RPTGL
Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS
Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT
Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E   
Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             L  +     I    ++L       +A L K LRKQM  AA  L FE+AA IRDEI +L
Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654

Query: 794 K 794
           +
Sbjct: 655 R 655


>gi|307353384|ref|YP_003894435.1| excinuclease ABC subunit B [Methanoplanus petrolearius DSM 11571]
 gi|307156617|gb|ADN35997.1| excinuclease ABC, B subunit [Methanoplanus petrolearius DSM 11571]
          Length = 656

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/657 (52%), Positives = 445/657 (67%), Gaps = 27/657 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+G QP AI +L +G++  E+ Q LLGVTGSGKTFT+A VIE  Q+P +V+A
Sbjct: 7   FKLVSDFAPAGSQPEAIKELDEGLNKGERFQTLLGVTGSGKTFTIANVIEYYQKPVLVLA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +I++MR 
Sbjct: 67  HNKTLAAQLYNEFKEFFPGNRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQMRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT SLL R D IVV+SVS IYG+G+ E++  +  +LK GD +++ +LL  LV   ++R 
Sbjct: 127 AATASLLSRTDVIVVASVSAIYGLGNPENFENLGFELKAGDRIKRNDLLMKLVDILFERN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  ++ G FRV GD+I++ P +  ++  R+ MFG++IE ISE    TG  +  ++   +Y
Sbjct: 187 DTELMPGRFRVRGDTIDLIPGYFNNI-IRIEMFGDEIERISEVDKNTGDILEPMKYFFVY 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HYV P      A++ IK EL+ RL  L      LEA RL+QR  YD+EM+E TGSC+
Sbjct: 246 PARHYVIPEEEKAAAIEAIKAELEERLPLLGP----LEAHRLKQRTLYDMEMIEETGSCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+   R  GE P  L +Y P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 302 GIENYSRHFDRRAEGEKPFCLLDYFPDDFLLVVDESHQTLPQVRGMYNGDRSRKIPLVDY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F E+       I VSATPG +E E    + VEQIIRPTGLVDP VE
Sbjct: 362 GFRLPSAFDNRPLVFNEFEEYMRHVIFVSATPGIYEEEHSLNV-VEQIIRPTGLVDPLVE 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  R Q+ DV +EI    ++G R+L+T LTK++AE+LTE+L  + I+ RY+HS++KT+E
Sbjct: 421 IRPVRGQMADVLEEIRKTTEKGDRVLITTLTKKLAEELTEFLASKKIKTRYLHSDIKTIE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLGKFDVLVGINLLREGLDIPE G + ILDADKEGFLR   SLIQ IGRAAR
Sbjct: 481 RTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDSRSLIQIIGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK----EKIMEVIDPI 736
           N NS V+LYAD +T SI+ A+ ET RRR  QLE NK H I P ++K    EK +++ D  
Sbjct: 541 NANSYVVLYADNMTDSIKKAVSETERRRNMQLEFNKAHGIVPVTIKKPVREKEIDIKDIK 600

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
            +  A   N+ I+                 L   M  AA+ L+FE A  +RD I++L
Sbjct: 601 HIPKAEIPNLIIE-----------------LEADMDAAAEALDFERAIVLRDRIRQL 640


>gi|57236983|ref|YP_178784.1| excinuclease ABC subunit B [Campylobacter jejuni RM1221]
 gi|81819538|sp|Q5HVA1|UVRB_CAMJR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|57165787|gb|AAW34566.1| excinuclease ABC, B subunit [Campylobacter jejuni RM1221]
 gi|315058089|gb|ADT72418.1| Excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni S3]
          Length = 657

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/661 (50%), Positives = 441/661 (66%), Gaps = 14/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+
Sbjct: 2   LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R 
Sbjct: 62  HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR 
Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y
Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+
Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +YGFRLPS +DNRPL F+E+   NC     + VSATP   ELE  +  I  QI+RPTGL
Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS
Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT
Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E   
Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             L  +     I    ++L       +A L K LRKQM  AA  L FE+AA IRDEI +L
Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLAKELRKQMLEAAKALEFEKAAAIRDEINKL 654

Query: 794 K 794
           +
Sbjct: 655 R 655


>gi|194337381|ref|YP_002019175.1| excinuclease ABC, B subunit [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309858|gb|ACF44558.1| excinuclease ABC, B subunit [Pelodictyon phaeoclathratiforme BU-1]
          Length = 698

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 325/669 (48%), Positives = 441/669 (65%), Gaps = 14/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + Y P+GDQP AI  L  G+ S    Q LLGVTGSGKTFT++ VI    RP +VM+
Sbjct: 23  YKIVSPYSPAGDQPKAIEALCDGVRSGNPYQTLLGVTGSGKTFTISNVIARFDRPVLVMS 82

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEYF+SYYD+YQPEAY+P  D YI K+  IN++I+R+R 
Sbjct: 83  HNKTLAAQLYGELKQFFPDNAVEYFISYYDFYQPEAYLPSLDKYIAKDLRINDEIERLRL 142

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVVSSVSCIYG+GS E +   IV+L+ G   ++   L  L+   Y R
Sbjct: 143 KATSSLLSGRKDVIVVSSVSCIYGLGSPEDWKAQIVELRSGMEKDRDLFLKELISLHYIR 202

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+    G FRV GD I++ P+H E++A R+  FG++IE I  F   +G+ +   +   I
Sbjct: 203 DDVQPSSGKFRVRGDIIDLVPAH-EELALRIEFFGSEIESIQTFDIHSGEVLGVEDYAFI 261

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +V     L  AM  I+ EL  RL     E RLLEA+R+E+R  YDLEM++  G C
Sbjct: 262 YPARQFVADEEKLKVAMLAIENELAERLNYFRSENRLLEARRIEERTRYDLEMMKELGYC 321

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+ R PGE P  L +Y P D L+ +DESHVT+PQI GMY GD  RK  L E
Sbjct: 322 SGIENYSRHLSARPPGERPCCLLDYFPSDFLVIIDESHVTLPQIRGMYGGDRSRKTILVE 381

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEE+  +    I VSATP   EL +  G++VEQ++RPTGL+DPPV
Sbjct: 382 HGFRLPSALDNRPLRFEEFEEMASQVICVSATPSEHELLRSGGVVVEQLVRPTGLLDPPV 441

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++++  EI +   +G ++L+  LTKRM+EDL ++  +  IR RY+HSE+K+L
Sbjct: 442 EVRPVTGQIDNLLAEIRIHTAKGNKVLVMTLTKRMSEDLHDFFRKTGIRSRYLHSEIKSL 501

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+R+LR+G  DVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL+Q  GRAA
Sbjct: 502 ERMQILRELRVGDIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 561

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+  V+LYAD +T+SI+  +DET RRR  Q  +N++H I P+S+ + + +++D   + 
Sbjct: 562 RNVDGLVVLYADVVTRSIREVLDETARRRTIQQRYNEEHGITPRSIIKSVDQILDTTGVA 621

Query: 740 DA------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           DA                  +     +L+ + G A    LR +M  AA  + +E+AA +R
Sbjct: 622 DAEERYRRKRFGLEPKPERVLSGHIDTLTPEAGYALAAELRLEMQEAAVQMEYEKAAYLR 681

Query: 788 DEIKRLKSS 796
           DEI +L+ +
Sbjct: 682 DEITKLEQA 690


>gi|86149808|ref|ZP_01068037.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85839626|gb|EAQ56886.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni
           CF93-6]
          Length = 657

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 330/661 (49%), Positives = 441/661 (66%), Gaps = 14/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+
Sbjct: 2   LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R 
Sbjct: 62  HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR 
Sbjct: 122 NATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y
Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+
Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +YGFRLPS +DNRPL F+E+   NC     + VSATP   ELE  +  I  QI+RPTGL
Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS
Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT
Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSATSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E   
Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             L  +     I    ++L       +A L K LRKQM  AA  L FE+AA IRDEI +L
Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654

Query: 794 K 794
           +
Sbjct: 655 R 655


>gi|313617223|gb|EFR89711.1| excinuclease ABC subunit B [Listeria innocua FSL S4-378]
          Length = 587

 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 320/589 (54%), Positives = 425/589 (72%), Gaps = 5/589 (0%)

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RHSAT +L 
Sbjct: 1   QLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRHSATAALF 60

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
           ER D I+++SVSCIYG+GS   Y +M+V L++G  + + +LL  LV  QY R DI   RG
Sbjct: 61  ERRDVIIIASVSCIYGLGSPVEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRNDIDFQRG 120

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            FRV GD +EIFP+  ++   R+  FG++IE I E   LTG+ I + E + I+  SH+VT
Sbjct: 121 RFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGDREHVSIFPASHFVT 180

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
               +  A+  IK EL+ RL  L  E +LLEAQRLEQR  YDLEM+E  G C  IENYSR
Sbjct: 181 RPDIMKKAIVNIKAELEDRLKVLRAENKLLEAQRLEQRTNYDLEMMEEMGYCSGIENYSR 240

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
           +L+ R  G  P TL +Y P+D  + +DESHVT+PQI GM+ GD  RK  L ++GFRLPS 
Sbjct: 241 HLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQIRGMFNGDQARKQMLVDHGFRLPSA 300

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +DNRPLR EE+       + +SATPG +ELE    +I EQIIRPTGL+DP VEIR  + Q
Sbjct: 301 LDNRPLRLEEFEKHINQIMFISATPGPYELEXXPDVI-EQIIRPTGLLDPIVEIRPIQGQ 359

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           ++D+ DEIN   ++  R+L+T LTK+M+EDLT YL E  ++V+Y+HSEVKTLERIEIIRD
Sbjct: 360 IDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLERIEIIRD 419

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LRLG +DV+VGINLLREG+D+PE  LVAILDADKEGFLRS+ SLIQT+GRAARN N +VI
Sbjct: 420 LRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAARNENGRVI 479

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           +YAD +T S++ +I ET RRR+ Q+E+N+KH I P++++++I  +I       AA    +
Sbjct: 480 MYADKMTDSMRNSISETERRRKIQIEYNEKHGITPKTIRKEIRGIIAAT---SAADEREA 536

Query: 748 IDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +    LS +SKK+    ++ +  +M  AA  L+FE AA +RD +  +K+
Sbjct: 537 VKQHDLSKMSKKERDIFIEGMEHEMKEAAKALDFERAAELRDALLEIKA 585


>gi|307747592|gb|ADN90862.1| UvrABC system protein B [Campylobacter jejuni subsp. jejuni M1]
          Length = 657

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 330/661 (49%), Positives = 440/661 (66%), Gaps = 14/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+
Sbjct: 2   LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R 
Sbjct: 62  HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR 
Sbjct: 122 STTASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y
Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+
Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +YGFRLPS +DNRPL F+E+   NC     + VSATP   ELE  +  I  QI+RPTGL
Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS
Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT
Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E   
Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             L  +     I    ++L       +A L K LRKQM  AA  L FE+AA IRDEI +L
Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654

Query: 794 K 794
           +
Sbjct: 655 R 655


>gi|86153333|ref|ZP_01071537.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843059|gb|EAQ60270.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 657

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 330/661 (49%), Positives = 441/661 (66%), Gaps = 14/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+
Sbjct: 2   LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R 
Sbjct: 62  HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR 
Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y
Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+
Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +YGFRLPS +DNRPL F+E+   NC     + VSATP   ELE  +  I  QI+RPTGL
Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  +  I+V+YMHS
Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLKLGIKVKYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT
Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E   
Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             L  +     I    ++L       +A L K LRKQM  AA  L FE+AA IRDEI +L
Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654

Query: 794 K 794
           +
Sbjct: 655 R 655


>gi|153952519|ref|YP_001398373.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152939965|gb|ABS44706.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 657

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 330/661 (49%), Positives = 441/661 (66%), Gaps = 14/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+
Sbjct: 2   LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R 
Sbjct: 62  HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR 
Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y
Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S +      L  A++ IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+
Sbjct: 242 PTSQFSVGEARLKQAIRDIKIELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +YGFRLPS +DNRPL F+E+   NC     + VSATP   ELE  +  I  QI+RPTGL
Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS
Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT
Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E   
Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             L  +     I    ++L       +A L K LRKQM  AA  L FE+AA IRDEI +L
Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654

Query: 794 K 794
           +
Sbjct: 655 R 655


>gi|62185531|ref|YP_220316.1| excinuclease ABC subunit B [Chlamydophila abortus S26/3]
 gi|81312322|sp|Q5L4S6|UVRB_CHLAB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|62148598|emb|CAH64370.1| UvrABC system protein B UvrB [Chlamydophila abortus S26/3]
          Length = 656

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 334/656 (50%), Positives = 435/656 (66%), Gaps = 11/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P GDQP AIA+L +G+ +R   Q+LLG TGSGKTFT+A V+  + RP +V+A
Sbjct: 3   FELRAAFSPCGDQPEAIAKLTQGVRNRTPSQVLLGTTGSGKTFTIANVVANVNRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYF+SYYDYYQPEAY+ R DTYIEK   IN +ID++R 
Sbjct: 63  HNKTLAAQLYQEFKEFFPNNAVEYFISYYDYYQPEAYIARNDTYIEKSLLINSEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSSVSCIYGIGS E+Y+ M ++L +G    +  L S LVK  Y+  
Sbjct: 123 SATRSILERRDTLIVSSVSCIYGIGSPENYTSMALELTVGTEYPRALLASQLVKMHYQAS 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            +   R TFR  G  I+IFP++  ++A R+  F + +  I    PLT     +V ++ +Y
Sbjct: 183 SVP-QRSTFRERGSVIDIFPAYESELAIRLEFFNDTLTSIDYSDPLTMMPKESVTSVILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ RL   +   R +E  RL  R T+D+EM++ TG C+
Sbjct: 242 PGSHYVTPEAVREQAIRSIREELEERLAFFQD--RPIEQDRLFHRTTHDIEMIKETGFCK 299

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ T   PG PP  L +Y PED LL +DESH T+PQI  MYRGDF RK +L EY
Sbjct: 300 GIENYSRHFTNTPPGAPPTCLLDYFPEDFLLVIDESHQTLPQIRAMYRGDFSRKQSLVEY 359

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  EL + QG IVEQI+RPTG+ DP  E
Sbjct: 360 GFRLPSAYDNRPLTYEEARKYFHNVIYVSATPGETELNESQGHIVEQILRPTGIPDPIPE 419

Query: 561 IRSARTQVEDVYDEI--NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           IR A  QV+D+ +EI   L+  Q  +IL+  +TK++AED+  +L E +I   Y+HS ++T
Sbjct: 420 IRPATGQVDDLLEEIRKRLSKSQE-KILVISITKKLAEDIAAFLSELDIAAAYLHSGIET 478

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER  I+ DLRLG  DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS +SLIQ  GRA
Sbjct: 479 AERTRILSDLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRA 538

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV+ KVI YAD  T SI+  + ET RRR  QLE+NK +NI P+ + + I    +PI  
Sbjct: 539 ARNVDGKVIFYADHKTLSIEQTLKETERRRHIQLEYNKANNITPKPIIKAIFA--NPIPQ 596

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                     D  Q  LS ++ +  +K     M  AA+   F+EAA+ RD++K  K
Sbjct: 597 GGKKAVQ---DTPQKPLSTQELEKLIKKYENLMLQAANAFRFDEAAQYRDKMKAAK 649


>gi|212550673|ref|YP_002308990.1| excinuclease ABC subunit B [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548911|dbj|BAG83579.1| excinuclease ABC subunit B [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 672

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 311/663 (46%), Positives = 441/663 (66%), Gaps = 11/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI  L+  +      Q LLGVTGSGKTFTMA VI  +  PA++++
Sbjct: 3   FELVSNFRPAGDQPQAIHSLVSRVKQGVSYQTLLGVTGSGKTFTMANVIAQIGHPALILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+ +FK FFPHNAVEYFVSYYD+YQPEAY+P ++TYIEK+  IN +I+RMR 
Sbjct: 63  HNKTLAAQLFKDFKEFFPHNAVEYFVSYYDFYQPEAYLPISNTYIEKDFGINAEIERMRI 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           ++  +LL  R D ++VSS+SC+YG+G+ E Y + IV +K G ++ Q   L  LV   Y R
Sbjct: 123 ASVSALLSGRQDVVIVSSISCLYGMGNPEDYRENIVSIKRGMTMLQTIFLRKLVTGMYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             I    G FRV GD++++FP++  D+A RV  +G++IE+I  F P+ GQ +   E   I
Sbjct: 183 NQIDFTNGRFRVMGDTVDVFPAY-SDMALRVIFYGDEIEKICTFNPVNGQVLEIFEQYDI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    + T +  +  A++ I+ +L   +  L   G++ EA+RL +R+ +D+EM+   G C
Sbjct: 242 YPAGLFTTTQDRVVVAVRQIEADLNQHICFLNGLGKIQEARRLHERVRFDIEMIRQLGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G+ P  L +Y P + L+ +DESHVTIPQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRQQGDRPFCLIDYFPGNFLMIIDESHVTIPQIRAMYEGDQSRKMNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL F+E+  + P  I +SATP  +EL  C+GII+EQ++RPTGL+DP +
Sbjct: 362 YGFRLPAALDNRPLTFDEFESITPQKIFISATPAEYELRMCEGIIIEQVVRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+RS   Q++D+ +EI    ++  R L+T LTKRMAE+L  Y    NI+  Y+HS++K L
Sbjct: 422 EVRSTLHQIDDLMEEIRQRLEKNERTLVTTLTKRMAEELNSYFVNLNIQAAYIHSDIKAL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+ II + R G FDVL+G+NLLREGLD+PE  LVA+LDADKEGFLRS  SL Q  GRAA
Sbjct: 482 ERVGIIDEFRRGVFDVLIGVNLLREGLDLPEVSLVAVLDADKEGFLRSYRSLTQIAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N KVI YAD +TKS++  ID+T +RREKQL +NK++ I P+ V++ +      ++L 
Sbjct: 542 RNINGKVIFYADKMTKSMRNTIDDTNKRREKQLLYNKRNRIIPKQVQKSVST--SSLVLH 599

Query: 740 DAATTNI-------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                NI       ++  +  ++S  + +  +  +RK M  A+    F EAA  RDE+ +
Sbjct: 600 TNTKLNIKFAFNIETVFKEASTMSHIQLEKAINQIRKMMLFASKQFEFLEAAHYRDELIK 659

Query: 793 LKS 795
           L++
Sbjct: 660 LEN 662


>gi|89071985|ref|ZP_01158581.1| excinuclease ABC subunit B [Photobacterium sp. SKA34]
 gi|89052086|gb|EAR57537.1| excinuclease ABC subunit B [Photobacterium sp. SKA34]
          Length = 656

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 315/621 (50%), Positives = 433/621 (69%), Gaps = 2/621 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP A+A+L+  I      Q L GVTGSGKTFTMA +I  +QRP +++A
Sbjct: 6   FILHSAYPPSGDQPEALARLIGNIQDGVTHQTLQGVTGSGKTFTMANMIHRLQRPTLILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K FFP NAVEYFVSYYDYYQPE Y+P +D +I K+S++N+Q++R+R 
Sbjct: 66  HNKTLAAQLYSEMKRFFPENAVEYFVSYYDYYQPEVYIPGSDRFIRKDSAVNQQLERLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+SL+ER D IVV+SVS IYG+G    Y  + + L +G ++++++ +  LV  QY R 
Sbjct: 126 STTKSLIERKDVIVVASVSAIYGLGDPAQYRAVQIPLSVGMTIDREDFIQRLVALQYSRC 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  I R TFRV G+  +I+P+  E  + RV MF + IE++    P+TG+ + +++   + 
Sbjct: 186 ERTIERATFRVHGEIFDIYPADSESKSVRVVMFDDTIEQLQWLDPITGKVMGDIDHYFVS 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y   +  L  A   I++EL+MR+ EL  E R++EA RL +R T+D+EM++  G C 
Sbjct: 246 PKTLYAASKDKLLKASIEIQKELEMRVAELNNENRIVEAARLYERTTHDIEMMQQLGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS YL  R+P  PP TL +Y+PED LLF+DESHV IPQIS MYR D  RK TL +Y
Sbjct: 306 GLENYSCYLNDRDPTLPPTTLLDYLPEDGLLFIDESHVMIPQISAMYRSDVSRKETLIDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPL F+E+  ++P T+ VSATPG +EL++    ++EQIIRPTGL+DP VE
Sbjct: 366 GFRLPSAKNNRPLMFKEFEQIKPQTVFVSATPGDYELKKSDQHVIEQIIRPTGLLDPIVE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQ +D+  EI+   Q+  R+L+T LTK+ AE L E + E+ I+V Y+HSEVKT +
Sbjct: 426 VRPLATQTDDLLKEISERTQKDERVLVTTLTKKSAEALYELMSEQGIKVSYIHSEVKTEQ 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR G FDVL+GINLLREGLDIPE  LVA+L+AD  GFLRS  +LIQ IGRAAR
Sbjct: 486 RVEIIDDLRAGTFDVLIGINLLREGLDIPEASLVAVLNADHAGFLRSTQALIQIIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK--IMEVIDPILL 738
           N N K ILYAD IT ++Q A+ E+ +RRE+Q+E+NK HNI P S + K   ++  +P   
Sbjct: 546 NANGKAILYADKITPAMQQAMTESQQRRERQVEYNKAHNITPASSQRKKAAIDNNEPTQH 605

Query: 739 EDAATTNISIDAQQLSLSKKK 759
                +N+S   QQ++ ++K+
Sbjct: 606 SIEFCSNLSELCQQITATEKE 626


>gi|157414952|ref|YP_001482208.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385916|gb|ABV52231.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           81116]
          Length = 657

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 330/661 (49%), Positives = 439/661 (66%), Gaps = 14/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ + + PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+
Sbjct: 2   LELTSKFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R 
Sbjct: 62  HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR 
Sbjct: 122 STTASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y
Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+
Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +YGFRLPS +DNRPL F+E+   NC     + VSATP   ELE  +  I  QI+RPTGL
Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS
Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT
Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E   
Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEES-- 596

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             L  +     I    ++L       +A L K LRKQM  AA  L FE+AA IRDEI +L
Sbjct: 597 --LKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKL 654

Query: 794 K 794
           +
Sbjct: 655 R 655


>gi|291515122|emb|CBK64332.1| Excinuclease ABC subunit B [Alistipes shahii WAL 8301]
          Length = 690

 Score =  635 bits (1639), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 323/673 (47%), Positives = 443/673 (65%), Gaps = 22/673 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AI QL+  I    K   LLGVTGSGKTFT+A VI  + RP +V++
Sbjct: 3   FKLVSDYAPMGDQPEAIGQLVSSIEHGSKHNTLLGVTGSGKTFTVANVIARLNRPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+NFFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+  IN +I++MR 
Sbjct: 63  HNKTLAAQLYGEFRNFFPENAVEYFVSYYDYYQPEAYLPSTDTYIEKDLQINAEIEKMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
               +LL  R D IVVSSVSC+YG G+   +    + +K+G  V  K  L  LV+  Y R
Sbjct: 123 GTVATLLSGRRDVIVVSSVSCLYGAGNPADFHATAINIKVGQVVSYKHFLYKLVEALYTR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLE--DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            +  +   TFRV GD+++I  +  E  +  +RV  F N++E I    P+TGQ+I ++++I
Sbjct: 183 TERELEPATFRVNGDTVDIMAAFGEFGNQCFRVMFFDNEVEAIQSIDPVTGQRIASLDSI 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA + +VT +  +N A++ I  +L  ++   E+ GR +EAQR++QR+ YDLEM++  G
Sbjct: 243 TLYATNLFVTTKERINAAVQQIYLDLGKQIEFFERAGRPMEAQRIKQRVEYDLEMIKELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR  G  P  L +Y P+D L+ VDESHVT+PQ+  M+ GD  RK  L
Sbjct: 303 YCPGIENYSRYFDGRAAGTRPFCLIDYFPKDYLMVVDESHVTLPQVHAMFGGDRARKENL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP+  DNRPL F E+  L+ T+I VSATP  +EL + +G+IVEQ+IRPTGLVDP
Sbjct: 363 VEYGFRLPAAKDNRPLTFSEFEQLQGTSIYVSATPADYELMKSEGVIVEQLIRPTGLVDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+E+R    Q++D+  EI+   +   ++L+T +TKRMAE+L++Y     +R RY+HS+V 
Sbjct: 423 PLEVRVTLNQIDDLIGEIDKRVKNDDKVLVTTITKRMAEELSKYFDRVGVRNRYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERI+I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL Q  GR
Sbjct: 483 TLERIQILEDLRAGMFDVLVGVNLLREGLDLPEVALVAILDADKEGFLRNVRSLTQIAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE---------- 727
           AAR+    VILYADT T S++ AI+++ RRREKQ+ +N +H + P+  ++          
Sbjct: 543 AARHSQGNVILYADTCTDSMRYAIEQSNRRREKQVRYNMEHEMLPRQAQKSGSGQSALLA 602

Query: 728 ------KIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
                 ++     PI  +  A    + D Q+   + +   A +   R++M  AA +LNF 
Sbjct: 603 GRVDTSEVNMTAYPIAEDHYAA---AADVQKSYTASENIDALIDKAREEMERAAKSLNFL 659

Query: 782 EAARIRDEIKRLK 794
            AA+ RD +  L+
Sbjct: 660 AAAKFRDRMYELQ 672


>gi|57167692|ref|ZP_00366832.1| excinuclease ABC, B subunit [Campylobacter coli RM2228]
 gi|305433199|ref|ZP_07402355.1| excision endonuclease subunit UvrB [Campylobacter coli JV20]
 gi|57020814|gb|EAL57478.1| excinuclease ABC, B subunit [Campylobacter coli RM2228]
 gi|304443900|gb|EFM36557.1| excision endonuclease subunit UvrB [Campylobacter coli JV20]
          Length = 657

 Score =  635 bits (1638), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 327/668 (48%), Positives = 437/668 (65%), Gaps = 28/668 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ +D+ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+
Sbjct: 2   LELTSDFKPSPDQEQAIQGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R 
Sbjct: 62  HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL   D + ++SVS  YG+G+   Y  M++  ++   + QKELL  LV   YKR 
Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELDMQISQKELLKKLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y
Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+
Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL F+E+       + +SATP   ELE  +  I  QI+RPTGL+DP
Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKDCQFLFISATPAPLELELSKENIFHQIMRPTGLLDP 421

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS++ 
Sbjct: 422 LIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDID 481

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GR
Sbjct: 482 AIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGR 541

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN KV+L+   ITKS+Q A+D T  RR+ Q  +N+KHNI P SVK  I E +    
Sbjct: 542 AARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQEAYNQKHNITPTSVKRHIEESLK--- 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAH-----------LKSLRKQMHLAADNLNFEEAARI 786
                      + + L    +KGK             +K LRKQM  AA  L FE+AA +
Sbjct: 599 -----------NEENLGEIYRKGKKFEKMPANERAKIVKELRKQMLEAAKALEFEKAATL 647

Query: 787 RDEIKRLK 794
           RDEI +LK
Sbjct: 648 RDEINKLK 655


>gi|222099925|ref|YP_002534493.1| UvrABC system protein B [Thermotoga neapolitana DSM 4359]
 gi|254764916|sp|B9K844|UVRB_THENN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|221572315|gb|ACM23127.1| UvrABC system protein B [Thermotoga neapolitana DSM 4359]
          Length = 664

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 330/663 (49%), Positives = 457/663 (68%), Gaps = 14/663 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L++G++   + Q LLGVTGSGKTFTMA VI  + RPA+V++
Sbjct: 2   FKLVSEFEPTGDQPQAIEKLVEGLNRGMRFQTLLGVTGSGKTFTMANVIARVNRPALVIS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP N VE+F+SYYDYYQPEAY+P  D YIEK + IN+ I RMR 
Sbjct: 62  PNKTLAAQLYQEFKTFFPENRVEFFISYYDYYQPEAYIPTKDLYIEKNADINDVIVRMRM 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S  +S+  R D IVV+SVSCIY  G    + +M ++L +G+ ++  EL   L K  Y+R 
Sbjct: 122 STLKSVRTRRDVIVVASVSCIYATGDPNDFDRMNIKLSVGERLDVFELAEKLAKIGYQRT 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +   + G FR+ GD++EI+P++ +D   RV  FG++I+ IS         +  ++ + IY
Sbjct: 182 EDVSLSGCFRIRGDTLEIYPTY-QDEGIRVEFFGDEIDAISLIDRFNRTTLERLDKVIIY 240

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               +VT    L  A++ IKEEL+ RL EL+K+G++LE +RL+QR   D+E+LET G C 
Sbjct: 241 PAVEFVTTEEKLRRAIESIKEELRERLAELKKQGKVLEYERLKQRTLNDIELLETMGYCP 300

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GR PGEPP TL +Y  +D ++F+DESH+T+PQ+  MY GD  RK  L EY
Sbjct: 301 GIENYSRHFDGRKPGEPPYTLLDYFDDDFVVFIDESHITVPQLRAMYNGDRSRKKNLVEY 360

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       + VSATPG +EL   + + VEQIIRPTGLVDP VE
Sbjct: 361 GFRLPSAYDNRPLTFEEFLKKVGQIVFVSATPGDFELSVSEQV-VEQIIRPTGLVDPEVE 419

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R QV+D+ +EI    Q+G R L+TVLTK+ AE L+E+L E  I+  Y+HSE+  +E
Sbjct: 420 VRPTRGQVDDLINEIVKVKQRGERALVTVLTKKTAELLSEHLTELGIKSLYLHSELDAIE 479

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E+++ LR G  DV+VG+NLLREGLD+PE  LVAI+DAD EGFLRS+T+LIQ IGR AR
Sbjct: 480 RVEVLKKLRRGDVDVVVGVNLLREGLDLPEVSLVAIMDADTEGFLRSETTLIQIIGRTAR 539

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-MEVIDPILLE 739
           NVN KVI+YAD IT +++ AI+ET RRR  QLE+NKKH I P+S+ + + +EV +  +++
Sbjct: 540 NVNGKVIMYADRITNAMKRAIEETNRRRRIQLEYNKKHGITPRSIVKPLEIEVFEQFMVK 599

Query: 740 DA------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +          NI    + LSL +     ++  L ++M+ AA  L +E+AA +RDE+ R+
Sbjct: 600 EEPAEYGDTIKNIFSMKESLSLEE-----YVALLEEEMYRAASELRYEDAAALRDELFRV 654

Query: 794 KSS 796
           K +
Sbjct: 655 KET 657


>gi|218130938|ref|ZP_03459742.1| hypothetical protein BACEGG_02540 [Bacteroides eggerthii DSM 20697]
 gi|217987282|gb|EEC53613.1| hypothetical protein BACEGG_02540 [Bacteroides eggerthii DSM 20697]
          Length = 718

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 334/695 (48%), Positives = 473/695 (68%), Gaps = 25/695 (3%)

Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181
           I+ P    S+ ++  ++  F++ + YHP+GDQP AIAQL +G+      Q LLGVTGSGK
Sbjct: 19  IFIPF--LSLPDNPDEMNKFELTSAYHPTGDQPEAIAQLTEGVREGVPAQTLLGVTGSGK 76

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
           TFT+A VI  + +P ++++ NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +
Sbjct: 77  TFTIANVIANINKPTLILSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSS 136

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           DTYIEK+ +IN++ID++R +AT +LL  R D +VVSSVSCIYG+G+   +   +++++ G
Sbjct: 137 DTYIEKDLAINDEIDKLRLAATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQG 196

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
            +  +   L  LV   Y R DI + RG FRV GD+++I+ ++ +++  R+  +G++I+ I
Sbjct: 197 KNYSRNVFLRRLVDSLYVRNDIDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEIDSI 255

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
            E  P++G  I   +  KIY  + ++T +     A+  I+++L  ++   E EGR  EA+
Sbjct: 256 EEVDPVSGVTIARFDAYKIYPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAK 315

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
           RL++R+TYD+EM+   G C  IENYSRY  GR  G  P  L ++ PED L+ +DESHV++
Sbjct: 316 RLQERVTYDMEMMRELGHCSGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSV 375

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           PQI  MY GD  RK  L EYGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q 
Sbjct: 376 PQIRAMYGGDRARKTNLVEYGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELMQS 435

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
           +GI+VEQ+IRPTGL+DP +E+R +  Q++D+ +EI L  ++  R L+T LTKRMAE+LTE
Sbjct: 436 EGIVVEQVIRPTGLLDPIIEVRPSHNQIDDLMEEIQLRIERNERTLITTLTKRMAEELTE 495

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           YL   N++  Y+HS+V TLER+ I+ DLR G++DVLVG+NLLREGLD+PE  LVAILDAD
Sbjct: 496 YLLNNNVKCNYIHSDVDTLERVRIMSDLREGEYDVLVGVNLLREGLDLPEVSLVAILDAD 555

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
           KEGFLRS  SL QT GRAARNVN  VI+YAD IT+S+QL IDET RRREKQL++N++H I
Sbjct: 556 KEGFLRSHRSLTQTAGRAARNVNGMVIMYADKITESMQLTIDETNRRREKQLKYNEEHGI 615

Query: 721 NPQSV---------------------KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
            PQ +                     KEK+        +E  +T+ ++ D     +S+ +
Sbjct: 616 TPQQIKKAKSLNVFAGTEGFAESGTGKEKLSGNAPRPYVEQESTSMLAADPIVQYMSRNQ 675

Query: 760 GKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +  ++  +K M  AA  L+F EAA+ RDE+ +++
Sbjct: 676 LEKSIERTKKLMQEAAKKLDFIEAAQYRDEVLKME 710


>gi|307565585|ref|ZP_07628065.1| excinuclease ABC, B subunit [Prevotella amnii CRIS 21A-A]
 gi|307345744|gb|EFN91101.1| excinuclease ABC, B subunit [Prevotella amnii CRIS 21A-A]
          Length = 681

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 324/675 (48%), Positives = 467/675 (69%), Gaps = 23/675 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  L +G+   E  Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELTSTYKPTGDQPEAIRALTEGLKRGEHSQVLLGVTGSGKTFTVANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPHNAVEYYVSYYDYYQPEAYIPTTDTYIEKDLAINDKIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  SLL  R D I+VSSVSCIYG+G   +  + ++ +K G  +++   L  LV   Y R
Sbjct: 123 SAVSSLLSGRKDVIIVSSVSCIYGMGGPAAMQENVIHIKKGQKMDRNYFLRQLVSSLYLR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ + RG FRV GD+++I  ++ ++V  R++ + ++I+ I E   +   ++ + +T +I
Sbjct: 183 NDMDLQRGYFRVKGDTVDIAMAYSDNV-LRITWWDDEIDSIEEVDSIAFHRLSSFDTYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A+  I+++L M++   ++ G  ++A+R+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTQQAISKIQDDLMMQIDHFKQLGENIKAKRIKERVEYDIEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G+ P  L ++ P+D LL +DESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRTAGQRPYCLLDFFPKDYLLVIDESHVSVPQISAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL+FEE+  +    I VSATP  +EL++  G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAALDNRPLKFEEFKSMIHQVIYVSATPADFELKEADGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ +EI + A++  RIL+T LTKRMAE+LTEYL   ++R  Y+HS+V +L
Sbjct: 422 DVRPSENQIDDLMNEILIRAERQERILVTTLTKRMAEELTEYLLNHDVRTAYIHSDVASL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++II DLR G +DVLVG+NLLREGLDIPE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIINDLRAGLYDVLVGVNLLREGLDIPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--- 736
           RN+N KVI+YADTIT+S+Q  IDET RRR KQL++N++HNI P  + + I +++ P    
Sbjct: 542 RNINGKVIMYADTITESMQKTIDETMRRRIKQLKYNEEHNITPAQIVKTIKDIL-PTNKE 600

Query: 737 -----------------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
                             +ED  +   + D    S+SK++ +  +K+  + M  AA NL+
Sbjct: 601 GDNNFKNTTNKTINKKPHIEDIKSDTFASDPIIKSMSKEQLEKSIKNTTELMKQAAKNLD 660

Query: 780 FEEAARIRDEIKRLK 794
           F +AA+ RDEI RL+
Sbjct: 661 FLQAAQYRDEILRLQ 675


>gi|317476249|ref|ZP_07935500.1| excinuclease ABC [Bacteroides eggerthii 1_2_48FAA]
 gi|316907660|gb|EFV29363.1| excinuclease ABC [Bacteroides eggerthii 1_2_48FAA]
          Length = 718

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 334/695 (48%), Positives = 473/695 (68%), Gaps = 25/695 (3%)

Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181
           I+ P    S+ ++  ++  F++ + YHP+GDQP AIAQL +G+      Q LLGVTGSGK
Sbjct: 19  IFIPF--LSLPDNPDEMNKFELTSAYHPTGDQPEAIAQLTEGVREGVPAQTLLGVTGSGK 76

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
           TFT+A VI  + +P ++++ NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +
Sbjct: 77  TFTIANVIANINKPTLILSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSS 136

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           DTYIEK+ +IN++ID++R +AT +LL  R D +VVSSVSCIYG+G+   +   +++++ G
Sbjct: 137 DTYIEKDLAINDEIDKLRLAATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQG 196

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
            +  +   L  LV   Y R DI + RG FRV GD+++I+ ++ +++  R+  +G++I+ I
Sbjct: 197 KNYSRNVFLRRLVDSLYVRNDIDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEIDSI 255

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
            E  P++G  I   +  KIY  + ++T +     A+  I+++L  ++   E EGR  EA+
Sbjct: 256 EEVDPVSGVMIARFDAYKIYPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAK 315

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
           RL++R+TYD+EM+   G C  IENYSRY  GR  G  P  L ++ PED L+ +DESHV++
Sbjct: 316 RLQERVTYDMEMMRELGHCSGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSV 375

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           PQI  MY GD  RK  L EYGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q 
Sbjct: 376 PQIRAMYGGDRARKTNLVEYGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELMQS 435

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
           +GI+VEQ+IRPTGL+DP +E+R +  Q++D+ +EI L  ++  R L+T LTKRMAE+LTE
Sbjct: 436 EGIVVEQVIRPTGLLDPIIEVRPSHNQIDDLMEEIQLRIERNERTLITTLTKRMAEELTE 495

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           YL   N++  Y+HS+V TLER+ I+ DLR G++DVLVG+NLLREGLD+PE  LVAILDAD
Sbjct: 496 YLLNNNVKCNYIHSDVDTLERVRIMSDLREGEYDVLVGVNLLREGLDLPEVSLVAILDAD 555

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
           KEGFLRS  SL QT GRAARNVN  VI+YAD IT+S+QL IDET RRREKQL++N++H I
Sbjct: 556 KEGFLRSHRSLTQTAGRAARNVNGMVIMYADKITESMQLTIDETNRRREKQLKYNEEHGI 615

Query: 721 NPQSV---------------------KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
            PQ +                     KEK+        +E  +T+ ++ D     +S+ +
Sbjct: 616 TPQQIKKAKSLNVFAGTEGFAESGTGKEKLSGNAPRPYVEQESTSMLAADPIVQYMSRNQ 675

Query: 760 GKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +  ++  +K M  AA  L+F EAA+ RDE+ +++
Sbjct: 676 LEKSIERTKKLMQEAAKKLDFIEAAQYRDEVLKME 710


>gi|88596906|ref|ZP_01100142.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|88190595|gb|EAQ94568.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni
           84-25]
          Length = 657

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 327/668 (48%), Positives = 438/668 (65%), Gaps = 28/668 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+
Sbjct: 2   LELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R 
Sbjct: 62  HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR 
Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y
Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+
Sbjct: 242 PTSQFSVGEARLKQAIKDIKTELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL F+E+       + VSATP   ELE  +  I  QI+RPTGL+DP
Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKDCQFLFVSATPAPLELELSKENIFHQIMRPTGLLDP 421

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS++ 
Sbjct: 422 LIELKDSDNQVEILFDEAKKIIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDID 481

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GR
Sbjct: 482 AIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGR 541

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN KV+L+   ITKS+Q A+D T  RR+ Q  +N+KHNI P SVK  I E +    
Sbjct: 542 AARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQEAYNQKHNITPTSVKRHIEESLK--- 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAH-----------LKSLRKQMHLAADNLNFEEAARI 786
                      + + L    +KGK             +K LRKQM  AA  L FE+AA +
Sbjct: 599 -----------NEENLGEIYRKGKKFEKMPANERAKIVKELRKQMLEAAKALEFEKAATL 647

Query: 787 RDEIKRLK 794
           RDEI +L+
Sbjct: 648 RDEINKLR 655


>gi|283768498|ref|ZP_06341410.1| excinuclease ABC, B subunit [Bulleidia extructa W1219]
 gi|283104890|gb|EFC06262.1| excinuclease ABC, B subunit [Bulleidia extructa W1219]
          Length = 660

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 315/655 (48%), Positives = 439/655 (67%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L+KG+ S +K Q+L G TG+GKTFTMA +I  + RP ++ +
Sbjct: 6   FELVSTFKPTGDQPKAIEELVKGVLSGKKEQVLQGATGTGKTFTMANIIAKVNRPTLIFS 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK  FP+N VEYF+S +DYYQPEAYV + D YIEK ++IN+++D  R 
Sbjct: 66  HNKTLAGQLYSEFKELFPYNRVEYFISNFDYYQPEAYVAQRDMYIEKTAAINDELDMFRE 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S   SLLER D IVV+SV+CIY     + Y  M   +++G+S  +  LL  LV+ QY R 
Sbjct: 126 STINSLLERRDTIVVASVACIYAASDPKQYKDMFFTIRVGESYNRNALLRRLVEMQYGRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  +RG+ RV GD I++ PS  +    R+ +FG++++ I+E  P TG  +   +   I+
Sbjct: 186 DVDQVRGSMRVRGDVIDLTPSFTDQFNIRIELFGDEVDRITEVDPTTGTTLNAYQFYNIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S Y   + ++  A   I+ EL+ RL   +K  +LLE +RLEQR  +D+E L   G   
Sbjct: 246 PASGYARNKESILRACDAIEAELEERLRYFKKHDKLLEYERLEQRTRFDIESLRENGYVS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++  R  G+ P  LF+Y PE+ L+ VDESHV++PQI GMY GD  RK TL +Y
Sbjct: 306 GIENYSFHIDHRKQGQRPWNLFDYFPENFLIMVDESHVSLPQIRGMYNGDHSRKQTLVDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS ++NRP++++E+  + P  I  SATPG +ELE+    +VEQIIRPTGL+DP VE
Sbjct: 366 GFRLPSALENRPMKWDEFEAMIPQVIYCSATPGDYELEKVHNHVVEQIIRPTGLLDPVVE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+   ++   Q+  ++L+T LT  M+EDLT YL ER  +V Y+H E  T+E
Sbjct: 426 VRPTKGQIDDICIALDERIQKKEKVLITTLTVHMSEDLTSYLKERGYQVSYIHHETNTIE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +II DLR+GK+DV+VGINLLREGLDIPE  L+ ILDADKEGFLRSK SLIQ IGRAAR
Sbjct: 486 RSQIIHDLRIGKYDVVVGINLLREGLDIPEVSLICILDADKEGFLRSKRSLIQIIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  V +Y DTIT S++ AI+ET RRR  Q  +NK+H+I P++V++ I +VI     ++
Sbjct: 546 NANGHVYMYGDTITDSMKEAIEETNRRRYIQETYNKEHHIVPKTVQKSIGDVIRGKETQE 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            A+  I   A+   +SK+     +  L  +M  AA NLNFE AA +RD +  LK+
Sbjct: 606 MASRYIRKKAK---MSKQDTATLITHLEAEMKEAAANLNFERAAELRDMVLELKA 657


>gi|124485733|ref|YP_001030349.1| excinuclease ABC subunit B [Methanocorpusculum labreanum Z]
 gi|124363274|gb|ABN07082.1| Excinuclease ABC subunit B [Methanocorpusculum labreanum Z]
          Length = 644

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 329/662 (49%), Positives = 443/662 (66%), Gaps = 29/662 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q+ Y P G QP AI +L +G+   E+ Q LLGVTGSGKTFT+A VI+ +QRP +V+A
Sbjct: 5   FSLQSTYSPKGSQPEAIEELTEGLLDGEQFQTLLGVTGSGKTFTIANVIQNVQRPTLVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK+FFP+N VEYF+SYYDYYQPE+Y+ + D YIEK++SIN +I+ MR 
Sbjct: 65  HNKTLAAQLYNEFKDFFPNNHVEYFISYYDYYQPESYIAKKDQYIEKDASINPKIEMMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT S+L   D IVV+SVSCIYG+G+ E++  +  +++ G  + ++ELL  L+   ++R 
Sbjct: 125 AATASILSHRDTIVVASVSCIYGLGNPENFQNLGFEVRRGQKITRRELLERLLSILFERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI ++ G FRV GD++++ P +  ++  R+ +FG+ I+ ISE    TG++   +E   IY
Sbjct: 185 DIELMPGRFRVKGDTVDLIPGYFNNI-IRIELFGDTIDRISEIDKTTGKEKERMEYFFIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL--LEAQRLEQRITYDLEMLETTGS 438
              H+VTP      A+  I+ EL+    E+  E RL  L A RL QR  YDLEM+E TGS
Sbjct: 244 PARHFVTPESEKQAAIDSIRGELE----EVLAENRLDDLAAHRLRQRTQYDLEMIEETGS 299

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+   R  GE P  L +Y P+D L+ +DESH ++PQ+ GMY GD  RK +L 
Sbjct: 300 CKGIENYSRHFDRRAAGEKPYCLLDYFPDDFLMVIDESHQSLPQVRGMYNGDHSRKQSLV 359

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS  DNRPL+F E+       I VSATPG +E +    II EQIIRPTGLVDP 
Sbjct: 360 EYGFRLPSAFDNRPLKFVEFEKYLKQVIFVSATPGDYERKYSSQII-EQIIRPTGLVDPV 418

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R    Q +D+  EI+    +G R L+T LTK++AE+LTEYL  + I+ RY+HSE++T
Sbjct: 419 VEVRPITGQTDDLLREISAVIGRGDRALVTTLTKKLAEELTEYLAGQGIKTRYLHSEIQT 478

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER E+IR LRLG FDVLVGINLLREGLDIPE G + ILDADKEGFLR   SLIQ IGRA
Sbjct: 479 LERTELIRQLRLGMFDVLVGINLLREGLDIPEIGFIGILDADKEGFLRDARSLIQIIGRA 538

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK----EKIMEVID 734
           ARN +S V+LYAD +T S++ A+ ET RRRE Q+  N +H I P ++K    EK +++ D
Sbjct: 539 ARNSDSHVVLYADKMTDSMREALAETARRREMQMAFNTEHGITPVTIKKPVREKEVDIKD 598

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              L  +   N+ I+                 L  +M+ AA  L+FE A ++RD +K L+
Sbjct: 599 IRHLPKSEIPNLIIE-----------------LEAEMNAAAAALDFERAIQLRDRVKELR 641

Query: 795 SS 796
             
Sbjct: 642 GG 643


>gi|83319947|ref|YP_424722.1| excinuclease ABC subunit B [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|83283833|gb|ABC01765.1| excinuclease ABC, B subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 665

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 324/656 (49%), Positives = 436/656 (66%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ T Y PSGDQ  AI +L KGI   +K Q+LLG TG+GKTFT+A +I    + A+V+A
Sbjct: 8   YKLVTKYKPSGDQNQAIEKLNKGIIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K  FP N VEYFVS +D++QPEAY+P  D YI+K+S  N ++D MR 
Sbjct: 68  HNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +LL RND IVV+SV+ ++ + +   YS   ++LK+G  +++ ELL+ LV+  Y R 
Sbjct: 128 SACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI    G+F   GD I+I P  + ++ +R+S+F ++IE I     +T   + N+ T+ I+
Sbjct: 188 DIENQLGSFSAKGDVIKIVPGWVNNIMFRISLFDDEIESIHTLNTITNSILDNITTVTIH 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               Y+TP+  L T    I+ EL  RL EL+ E +LLEAQRLEQR  YDLE LE  G C 
Sbjct: 248 PAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L  R+ G+ P  L +Y   D +  VDESH+T+PQI GMY  D  RK TL EY
Sbjct: 308 GIENYSSHLDFRSKGQRPYVLLDYFNNDFITIVDESHITLPQIRGMYNTDRSRKLTLVEY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+N L    I  SATPG +EL+     +V+QIIRPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVVQQIIRPTGLLDPQIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+ +EI+L   Q  R+ +T LT RM+EDLT +L E+NI+V Y+HSE+KTLE
Sbjct: 428 IRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+ DLR G +DV+VG+NLLREGLD+PE  LV ILDADK+GFLR+  SLIQTIGR AR
Sbjct: 488 RSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K I+YADT+++++  AI ET RRR  Q E NKKHNI P+++ + I E    IL E 
Sbjct: 548 NVNGKAIMYADTVSQAMDEAIKETNRRRRIQEEFNKKHNITPKTISKAISE---SILSEQ 604

Query: 741 AATTNISIDAQQLSLSKKKG-KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T       +    K +  +  + +LR++M  AA  L+FE AA +RD I  L++
Sbjct: 605 TKKTLAKAKKIKDKKQKLQTIQQTIDTLRQEMLQAAKELDFERAAILRDTIIELEN 660


>gi|315609009|ref|ZP_07883981.1| excision endonuclease subunit UvrB [Prevotella buccae ATCC 33574]
 gi|315249389|gb|EFU29406.1| excision endonuclease subunit UvrB [Prevotella buccae ATCC 33574]
          Length = 680

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 326/673 (48%), Positives = 461/673 (68%), Gaps = 20/673 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL  GI      Q+LLGVTGSGKTFT+A VI+ +++P ++++
Sbjct: 3   FELTSKYKPTGDQPEAIRQLTDGIKDGMPAQVLLGVTGSGKTFTVANVIQNVEKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN+ ID++R 
Sbjct: 63  HNKTLAAQLYQEMKGFFPRNAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDDIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  +LL  R D IVVSSVSCIYG+G   +  Q +++LK G+++++ E L  LV   Y R
Sbjct: 123 SAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQQSVIKLKKGETLDRNEFLRRLVDALYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD++++F ++ ++V  RV+ + ++I+ I E    T  ++ + E+ ++
Sbjct: 183 NDIDLQRGCFRVKGDTVDVFMAYSDNV-LRVTWWDDEIDAIEEVDAETFHRVESFESYEL 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  ++    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTEQAIRMIQDDLVKQVDYFNEIGDTIKAQRIKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  GE P  L ++ P+D LL VDESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRQAGERPYCLLDFFPKDFLLVVDESHVSVPQISAMYGGDRARKQNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPL+F+E+  L   TI VSATP  +EL + +G++VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLKFDEFLSLLHQTIYVSATPADFELREAEGVVVEQIIRPTGLLDPQI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ DEI   + +  R+L+T LTKRMAE+LTEYL   N+R  Y+HS+V TL
Sbjct: 422 DVRPSENQIDDLLDEILTRSHRNERVLVTTLTKRMAEELTEYLLNNNVRANYIHSDVATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIMNDLRAGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI+YADTIT+S+Q  IDET RRR  QL++N++H I PQ + + I   +     E
Sbjct: 542 RNVNGKVIMYADTITESMQRTIDETARRRSIQLKYNEEHGITPQQIVKAIRSALPTKGDE 601

Query: 740 DAA------------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
           D                    +   + D   + +++++ +  + +    M  AA +L+F 
Sbjct: 602 DGTAAARSGHYPNLQAYLEPDSAAFAADPIVMQMTREQLEKSIANTTALMKQAAKDLDFI 661

Query: 782 EAARIRDEIKRLK 794
           +AA+ RDEI RL+
Sbjct: 662 QAAQYRDEIIRLQ 674


>gi|291277558|ref|YP_003517330.1| excinuclease ABC subunit B [Helicobacter mustelae 12198]
 gi|290964752|emb|CBG40607.1| excinuclease ABC subunit B [Helicobacter mustelae 12198]
          Length = 654

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 318/658 (48%), Positives = 448/658 (68%), Gaps = 9/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   Y P+GDQ  AI +L   I +  + Q L+GVTGSGKTF+MA +I  +  P ++M+
Sbjct: 2   FTLHAPYAPAGDQTQAIHKLSTFIKNGNQYQTLIGVTGSGKTFSMANIIARLNMPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSINE ++R+R 
Sbjct: 62  HNKTLCAQLYSEFKGFFPKNHVEYFISHFDYYQPEAYIPRRDLFIEKDSSINEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL  +D IVV+SVS  YG+G+ E Y  MI ++++G    +  LL  LV   Y R 
Sbjct: 122 SATTSLLAYDDVIVVASVSANYGLGNPEEYLTMIEKVQVGQHTSRDHLLKKLVDMGYSRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG F V G+ ++IFP++ E    RV  FG++IE I  +  +  ++++ +++  IY
Sbjct: 182 DNFFERGNFAVSGECVDIFPAYNEVEFVRVEFFGDEIERIGIYDSIERREVKRLDSYVIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A + ++        A++ I++EL+ RL   E + +++E  RL+ R  +DLEM+E++G C+
Sbjct: 242 AANQFIVSYERQKIALRNIEKELQERLAFFESQDKMIEYSRLKTRTEFDLEMMESSGICR 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDS---LLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENY+R+LTG+  GE P +L +Y  +     L+ VDESHV++PQ  GMY GD  RK  L
Sbjct: 302 GIENYARHLTGKKEGETPYSLLDYFEQKGRPYLVIVDESHVSLPQFGGMYSGDRSRKEVL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL+FEE+    P  + VSATP   ELE     + EQIIRPTGL+DP
Sbjct: 362 VEYGFRLPSALDNRPLKFEEFIHKAPHFLFVSATPAQKELELSGQNVAEQIIRPTGLLDP 421

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
             E+R +  QV D+YDEI     +  R+L+T LTK+MAE+L++Y  E  ++++YMHSE+ 
Sbjct: 422 LYEVRDSDNQVLDLYDEIKGVVAKKQRVLITTLTKKMAEELSKYYAELGLKIQYMHSEID 481

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER  +IR LRLG+FD+LVGINLLREGLD+PE  L+AI+DADKEGFLRS+TSL+QT+GR
Sbjct: 482 AIERNHLIRSLRLGEFDILVGINLLREGLDLPEVSLIAIMDADKEGFLRSETSLVQTMGR 541

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VI YA  IT+S+Q A++ T  RR+KQ+E+N  H I+P+SV+  + E +    
Sbjct: 542 AARNVEGRVIFYAKKITQSMQRAMEITDYRRKKQMEYNALHQISPKSVQRNLEEELK--- 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           LE +A   +    ++  + K + +  +K L K+M  +A  L+FEEAAR+RDEI R+KS
Sbjct: 599 LESSA---VLYKDKKAKIPKSERENIIKELNKKMLASAKLLDFEEAARLRDEIARIKS 653


>gi|29840717|ref|NP_829823.1| excinuclease ABC subunit B [Chlamydophila caviae GPIC]
 gi|33301869|sp|Q821H8|UVRB_CHLCV RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|29835067|gb|AAP05701.1| excinuclease ABC, subunit B [Chlamydophila caviae GPIC]
          Length = 656

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 334/656 (50%), Positives = 433/656 (66%), Gaps = 11/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P GDQP AIA+L +GI +  + Q+LLG TGSGKTFT+A V+  + RP +V+A
Sbjct: 3   FELRAAFAPCGDQPEAIAKLTQGIRNDVQSQVLLGTTGSGKTFTIANVVANVNRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYF+SYYDYYQPEAY+ R DTYIEK   IN +ID++R 
Sbjct: 63  HNKTLAAQLYQEFKEFFPNNAVEYFISYYDYYQPEAYIARNDTYIEKSLLINSEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSSVSCIYGIGS E+Y+ M ++LK+G    +  L + LVK  Y+  
Sbjct: 123 SATRSILERRDTLIVSSVSCIYGIGSPENYASMALELKVGKEYPRTLLAAQLVKMNYQAS 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            +   R TFR  G  I+IFP++  D A R+  F + +  I    PLT     +V +  IY
Sbjct: 183 PVA-QRSTFRERGSVIDIFPAYESDQAIRLEFFNDTLSSIEYSDPLTMIPTASVASTIIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A+  I+EEL+ R++      R +E  RL  R T+D+EM++ TG C+
Sbjct: 242 PGSHYVTPEAVREQAICSIREELEERMLFFHD--RPVEQDRLFHRTTHDIEMIKETGFCK 299

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ T   PG PP  L +Y PED LL +DESH T+PQI  MYRGD  RK +L EY
Sbjct: 300 GIENYSRHFTKMPPGAPPACLLDYFPEDFLLVIDESHQTLPQIRAMYRGDLSRKQSLVEY 359

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  EL + QG IVEQIIRPTG+ DP  E
Sbjct: 360 GFRLPSAYDNRPLTYEEAQKYFHNVIYVSATPGETELNESQGHIVEQIIRPTGIPDPIPE 419

Query: 561 IRSARTQVEDVYDEI--NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           IR A  QV+D+ +EI   L+  Q  +IL+  +TK++AED+  +L E +I   Y+HS ++T
Sbjct: 420 IRPATGQVDDLLEEIRKRLSKSQE-KILVISITKKLAEDIAAFLSELDIAAAYLHSGIET 478

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER  I+ DLRLG  DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS +SLIQ  GRA
Sbjct: 479 AERTRILADLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRA 538

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV  KVI YAD  T+SI+  + ET RRR+ QL++NK +NI P+ + + I    +PI  
Sbjct: 539 ARNVEGKVIFYADQKTRSIEQTLKETERRRQIQLDYNKANNITPKPIIKAIFA--NPI-- 594

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   S +  +  LS K+ +  +K     M  AA    F+EAA+ RD++K  K
Sbjct: 595 -PQGGKKESQEPAKTPLSIKELEKLIKKFENLMQEAAHEFRFDEAAKYRDKMKAAK 649


>gi|270297065|ref|ZP_06203264.1| excinuclease ABC, B subunit [Bacteroides sp. D20]
 gi|270273052|gb|EFA18915.1| excinuclease ABC, B subunit [Bacteroides sp. D20]
          Length = 686

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 328/676 (48%), Positives = 464/676 (68%), Gaps = 23/676 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIAQL +G+H     Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 4   FELTSAYQPTGDQPEAIAQLTEGVHEGLPAQTLLGVTGSGKTFTIANVIANINKPTLILS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 64  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 123

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   +   +++++ G +  +   L  LV   Y R
Sbjct: 124 AATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQGKNFSRNVFLRRLVDSLYVR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV+ +G++++ I E  P++G  +   +  KI
Sbjct: 184 NDIDLNRGNFRVKGDTVDIYLAYADNL-LRVTFWGDEVDSIEEVDPMSGVTVAKFDAYKI 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E EGR  EA+RL++R+TYD+EM+   G C
Sbjct: 243 YPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAKRLQERVTYDMEMIRELGHC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ PED L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 303 SGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 362

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+F+E+  +    I VSATP  +EL + +GI+VEQ+IRPTGL+DP +
Sbjct: 363 YGFRLPAAMDNRPLKFDEFEEMAKQVIYVSATPADYELMKSEGIVVEQVIRPTGLLDPII 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LTEYL   N++  Y+HS+V TL
Sbjct: 423 EVRPSHNQIDDLMEEIQVRIEKNERTLVTTLTKRMAEELTEYLLNNNVKCNYIHSDVDTL 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 483 ERVKIMGDLREGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK------------- 726
           RNVN  VI+YAD IT S+QL IDET RRREKQL++N++H I PQ +K             
Sbjct: 543 RNVNGMVIMYADKITDSMQLTIDETNRRREKQLKYNEEHGITPQQIKKAKNLNVFATNEA 602

Query: 727 --------EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
                   EK         +E  +T+ ++ D     +S+K+ +  ++  +K M  AA  L
Sbjct: 603 SGEAVLSSEKFTSSTPRPYVEQESTSTMAADPIVQYMSRKQLEKSIERTKKLMQEAAKKL 662

Query: 779 NFEEAARIRDEIKRLK 794
           +F EAA+ RDE+ +++
Sbjct: 663 DFIEAAQYRDEVLKME 678


>gi|256384068|gb|ACU78638.1| excinuclease ABC subunit B [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256384900|gb|ACU79469.1| excinuclease ABC subunit B [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455543|gb|ADH21778.1| excinuclease ABC subunit B [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 665

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 322/656 (49%), Positives = 437/656 (66%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ T Y PSGDQ  AI +L KGI   +K Q+LLG TG+GKTFT+A +I    + A+V+A
Sbjct: 8   YKLVTKYKPSGDQNQAIEKLNKGIIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K  FP N VEYFVS +D++QPEAY+P  D YI+K+S  N ++D MR 
Sbjct: 68  HNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +LL RND IVV+SV+ ++ + +   YS   ++LK+G  +++ ELL+ LV+  Y R 
Sbjct: 128 SACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI    G+F   GD ++I P  + ++ +R+S+F ++IE I     +T   + N+ T+ I+
Sbjct: 188 DIENQLGSFSAKGDVVKIVPGWVNNIMFRISLFDDEIESIHTLNTITNSILDNITTVTIH 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               Y+TP+  L T    I+ EL  RL EL+ E +LLEAQRLEQR  YDLE LE  G C 
Sbjct: 248 PAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L  R+ G+ P  L +Y   D +  +DESH+T+PQI GMY  D  RK TL EY
Sbjct: 308 GIENYSSHLDFRSKGQRPYVLLDYFNNDFITIIDESHITLPQIRGMYNTDRSRKLTLVEY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+N L    I  SATPG +EL+     +V+QIIRPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVVQQIIRPTGLLDPQIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+ +EI+L   Q  R+ +T LT RM+EDLT +L E+NI+V Y+HSE+KTLE
Sbjct: 428 IRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+ DLR G +DV+VG+NLLREGLD+PE  LV ILDADK+GFLR+  SLIQTIGR AR
Sbjct: 488 RSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K I+YADT+++++  AI ET RRR+ Q E NKKHNI P+++ + I E    IL E 
Sbjct: 548 NVNGKAIMYADTVSQAMDEAIKETNRRRKIQEEFNKKHNITPKTISKAISE---SILSEQ 604

Query: 741 AATTNISIDAQQLSLSKKKG-KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T       +    K +  +  + +LR++M  AA  L+FE AA +RD I  L++
Sbjct: 605 TKKTLAKAKKIKDKKQKLQTIQQTIDTLRQEMLQAAKELDFERAAILRDTIIELEN 660


>gi|331703863|ref|YP_004400550.1| Excinuclease ABC subunit B [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802418|emb|CBW54573.1| Excinuclease ABC subunit B [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 665

 Score =  632 bits (1630), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 323/656 (49%), Positives = 437/656 (66%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ T Y PSGDQ  AI +L KGI   +K Q+LLG TG+GKTFT+A +I    + A+V+A
Sbjct: 8   YKLVTKYKPSGDQNQAIEKLNKGIIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K  FP N VEYFVS +D++QPEAY+P  D YI+K+S  N ++D MR 
Sbjct: 68  HNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +LL RND IVV+SV+ ++ + +   YS   ++LK+G  +++ ELL+ LV+  Y R 
Sbjct: 128 SACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI    G+F   GD ++I P  + ++ +R+S+F ++IE I     +T   + N+ T+ I+
Sbjct: 188 DIENQLGSFSAKGDVVKIVPGWVNNIMFRISLFDDEIESIHTLNTITNSILDNITTVTIH 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               Y+TP+  L T    I+ EL  RL EL+ E +LLEAQRLEQR  YDLE LE  G C 
Sbjct: 248 PAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L  R+ G+ P  L +Y   D +  VDESH+T+PQI GMY  D  RK TL EY
Sbjct: 308 GIENYSSHLDFRSKGQRPYVLLDYFNNDFITIVDESHITLPQIRGMYNTDRSRKQTLVEY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+N L    I  SATPG +EL+     +V+QIIRPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVVQQIIRPTGLLDPQIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+ +EI+L   Q  R+ +T LT RM+EDLT +L E+NI+V Y+HSE+KTLE
Sbjct: 428 IRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+ DLR G +DV+VG+NLLREGLD+PE  LV ILDADK+GFLR+  SLIQTIGR AR
Sbjct: 488 RSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K I+YADT+++++  AI ET RRR+ Q E NKKHNI P+++ + I E    IL E 
Sbjct: 548 NVNGKAIMYADTVSQAMDEAIKETNRRRKIQEEFNKKHNIVPKTISKAISE---SILSEQ 604

Query: 741 AATTNISIDAQQLSLSKKKG-KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T       +    K +  +  + +LR++M  AA  L+FE AA +RD I  L++
Sbjct: 605 TKKTLAKAKKIKDKKQKLQTIQQTIDTLRQEMLQAAKELDFERAAILRDTIIELEN 660


>gi|313665659|ref|YP_004047530.1| excinuclease ABC, B subunit [Mycoplasma leachii PG50]
 gi|312949747|gb|ADR24343.1| excinuclease ABC, B subunit [Mycoplasma leachii PG50]
          Length = 665

 Score =  632 bits (1630), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 322/656 (49%), Positives = 436/656 (66%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ T Y PSGDQ  AI +L K I   +K Q+LLG TG+GKTFT+A +I    + A+V+A
Sbjct: 8   YKLVTKYKPSGDQNQAIEKLNKAIIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K  FP N VEYFVS +D++QPEAY+P  D YI+K+S  N ++D MR 
Sbjct: 68  HNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +LL RND IVV+SV+ ++ + +   YS   ++LK+G  +++ ELL+ LV+  Y R 
Sbjct: 128 SACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI    G+F   GD ++I P  + ++ +R+S+F ++IE I+    +T   + N+ T+ I+
Sbjct: 188 DIENQLGSFSAKGDVVKIVPGWVNNIMFRISLFDDEIESINTLNTITNSILDNITTVTIH 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               Y+TP+  L T    I+ EL  RL EL+ E +LLEAQRLEQR  YDLE LE  G C 
Sbjct: 248 PAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L  R+ G+ P  L +Y   D +  VDESH+T+PQI GMY  D  RK TL EY
Sbjct: 308 GIENYSSHLDFRSKGQRPYVLLDYFNNDFITIVDESHITLPQIRGMYNTDRSRKLTLVEY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+N L    I  SATPG +EL+     +V+QIIRPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVVQQIIRPTGLLDPQIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+ +EI+L   Q  R+ +T LT RM+EDLT +L E+NI+V Y+HSE+KTLE
Sbjct: 428 IRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+ DLR G +DV+VG+NLLREGLD+PE  LV ILDADK+GFLR+  SLIQTIGR AR
Sbjct: 488 RSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K I+YADTI++++  AI ET RRR+ Q E NKKHNI P+++ + I E    IL E 
Sbjct: 548 NVNGKAIMYADTISQAMDEAIKETNRRRKIQEEFNKKHNIVPKTISKAISE---SILSEQ 604

Query: 741 AATTNISIDAQQLSLSKKKG-KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                      +    K +  +  + +LR++M  AA  L+FE AA +RD I  L++
Sbjct: 605 TKKALAKAKKIKDKKQKLQTIQQTIDNLRQEMLQAAKELDFERAAILRDTIIELEN 660


>gi|329964885|ref|ZP_08301893.1| excinuclease ABC, B subunit [Bacteroides fluxus YIT 12057]
 gi|328524526|gb|EGF51594.1| excinuclease ABC, B subunit [Bacteroides fluxus YIT 12057]
          Length = 685

 Score =  632 bits (1630), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 332/675 (49%), Positives = 470/675 (69%), Gaps = 22/675 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 4   FELTSAYKPTGDQPEAIAQLTEGVREGLPAQTLLGVTGSGKTFTIANVIANINKPTLILS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 64  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 123

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT SLL  R D +VVSSVSCIYG+G+   +   +++++ G +  +   L  LV   Y R
Sbjct: 124 AATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEVQQGKNFSRNVFLRRLVDSLYVR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  R+  +G++I+ I E  P++G  I   ++ KI
Sbjct: 184 NDIDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEIDSIEEVDPVSGVTIAKFDSYKI 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E EGR LEA+RL++R+TYD+EM+   G C
Sbjct: 243 YPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPLEAKRLQERVTYDMEMIRELGHC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 303 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKVNLVE 362

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 363 YGFRLPAAMDNRPLKFEEFEEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPII 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LTEYL   N++  Y+HS+V TL
Sbjct: 423 EVRPSHNQIDDLMEEIQVRIEKNERTLVTTLTKRMAEELTEYLLNNNVKCNYIHSDVDTL 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 483 ERVKIMSDLREGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI----- 733
           RNVN  VI+YAD IT+S+QL IDET RRREKQL++N++H I PQ +K+ K + V      
Sbjct: 543 RNVNGMVIMYADRITESMQLTIDETNRRREKQLKYNEEHGITPQQIKKAKNLNVFATGDA 602

Query: 734 --DPILLEDAAT------------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
             D +  +D A+            ++++ D     +S+ + +  ++  RK M  AA  L+
Sbjct: 603 SADAMGSKDKASIAPRPYIEQETASSVAADPIVQYMSRAQLEKSIERTRKLMQEAAKKLD 662

Query: 780 FEEAARIRDEIKRLK 794
           F EAA+ RDE+ +++
Sbjct: 663 FIEAAQYRDEVLKME 677


>gi|328915140|gb|AEB55973.1| excinuclease ABC, B subunit [Chlamydophila psittaci 6BC]
          Length = 661

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 332/656 (50%), Positives = 436/656 (66%), Gaps = 11/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P GDQP AIA+L +G+ +    Q+LLG TGSGKTFT+A V+  + RP +V+A
Sbjct: 8   FELRAAFSPCGDQPEAIAKLTQGVRNHTPSQVLLGTTGSGKTFTIANVVANVNRPTLVLA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYF+SYYDYYQPEAY+ R DTYIEK   IN +ID++R 
Sbjct: 68  HNKTLAAQLYQEFKEFFPNNAVEYFISYYDYYQPEAYIARNDTYIEKSLLINSEIDKLRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSSVSCIYGIGS E+Y+ M ++LK+G    +  L S LVK  Y+  
Sbjct: 128 SATRSILERRDTLIVSSVSCIYGIGSPENYTSMALELKVGREYPRAILASQLVKMNYQAS 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            +   R TFR  G  I+IFP++  D+A R+    + +  I    PLT   + +V +I +Y
Sbjct: 188 SVA-QRSTFRERGSVIDIFPAYESDLAIRLEFSNDTLSSIEYSDPLTMIPMESVTSIILY 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ RL   +   R +E  RL  R T+D+EM++ TG C+
Sbjct: 247 PGSHYVTPEAVREQAIRSIREELEERLAFFQD--RPIEQDRLFHRTTHDIEMIKETGFCK 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ T   PG PP  L +Y P++ LL +DESH T+PQI  MYRGD  RK +L EY
Sbjct: 305 GIENYSRHFTKSPPGAPPACLLDYFPDNFLLVIDESHQTLPQIRAMYRGDRSRKESLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  EL + QG IVEQIIRPTG+ DP  E
Sbjct: 365 GFRLPSAYDNRPLTYEEARKYFHNVIYVSATPGETELNESQGHIVEQIIRPTGIPDPIPE 424

Query: 561 IRSARTQVEDVYDEI--NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           IR A  QV+D+ +EI  +L+  Q  +IL+  +TK++AED+  +L E +I   Y+HS ++T
Sbjct: 425 IRPATGQVDDLLEEIRKHLSKSQA-KILVISITKKLAEDIAAFLSELDIAAAYLHSGIET 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER  I+ DLRLG  DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS +SLIQ  GRA
Sbjct: 484 AERTRILSDLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV+ KVI YAD  T SI+  + ET RRR+ QLE+NK + I P+ + + I    +PI  
Sbjct: 544 ARNVDGKVIFYADHKTLSIEQTLKETERRRQIQLEYNKANKITPKPIIKAIFA--NPI-- 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  +  D  Q  LS ++ +  +K     M  AA+   F+EAA+ RD++K  K
Sbjct: 600 PQGGKKEVQ-DTPQQPLSTQELEKLIKKYENLMQQAANAFRFDEAAKYRDKMKAAK 654


>gi|329955051|ref|ZP_08296032.1| excinuclease ABC, B subunit [Bacteroides clarus YIT 12056]
 gi|328526341|gb|EGF53356.1| excinuclease ABC, B subunit [Bacteroides clarus YIT 12056]
          Length = 719

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 335/708 (47%), Positives = 477/708 (67%), Gaps = 24/708 (3%)

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           LI     LL N +I+      S+ ++S ++  F++ + Y P+GDQP AIAQL KG+    
Sbjct: 6   LISQRYVLLTNSQIFDVT-FLSLPDNSDEMNKFELTSAYRPTGDQPEAIAQLTKGVREGI 64

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
             Q LLGVTGSGKTFT+A VI  + +P ++++ NK LAAQLYSEFK FFP+NAVEY+VSY
Sbjct: 65  PAQTLLGVTGSGKTFTIANVIANINKPTLILSHNKTLAAQLYSEFKGFFPNNAVEYYVSY 124

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSV 287
           YDYYQPEAY+P +DTYIEK+ +IN++ID++R +AT +LL  R D +VVSSVSCIYG+G+ 
Sbjct: 125 YDYYQPEAYLPSSDTYIEKDLAINDEIDKLRLAATSALLSGRKDVVVVSSVSCIYGMGNP 184

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             +   ++ ++ G +  +   L  LV   Y R DI + RG FRV GD+++I+ ++ +++ 
Sbjct: 185 ADFYNNVIDVQQGKNYSRNVFLRRLVDSLYVRNDIDLNRGNFRVKGDTVDIYLAYADNL- 243

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  +G++++ I E  P++G  I   +  KIY  + ++T +     A+  I+++L+ ++
Sbjct: 244 LRIVFWGDEVDSIEEVDPISGVTIARFDAYKIYPANLFMTTKEATLRAIHEIEDDLRKQV 303

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
              E EGR  EA+RL++R+TYD+EML   G C  IENYSRY  GR  G  P  L ++ P+
Sbjct: 304 QWFENEGRPFEAKRLQERVTYDMEMLRELGHCSGIENYSRYFDGREAGTRPYCLLDFFPD 363

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           D L+ +DESHV++PQI  MY GD  RK  L EYGFRLP+ MDNRPL+FEE+  +    I 
Sbjct: 364 DFLIVIDESHVSVPQIRAMYGGDRARKTNLVEYGFRLPAAMDNRPLKFEEFESMAKQVIY 423

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
           VSATP  +EL Q +GI+VEQ+IRPTGL+DP +E+R +  Q++D+ +EI L  ++  R L+
Sbjct: 424 VSATPADYELMQSEGIVVEQVIRPTGLLDPIIEVRPSHNQIDDLMEEIQLRIERNERTLV 483

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           T LTKRMAE+LTEYL   +++  Y+HS+V TLER++I+ DLR G++DVLVG+NLLREGLD
Sbjct: 484 TTLTKRMAEELTEYLLNNSVKCNYIHSDVDTLERVKIMSDLREGEYDVLVGVNLLREGLD 543

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
           +PE  LVAILDADKEGFLRS  SL QT GRAARNVN  VI+YAD IT+S+QL IDET RR
Sbjct: 544 LPEVSLVAILDADKEGFLRSHRSLTQTAGRAARNVNGMVIMYADRITESMQLTIDETNRR 603

Query: 708 REKQLEHNKKHNINPQSV---------------------KEKIMEVIDPILLEDAATTNI 746
           REKQL++N++H I P+ +                     KEK         +E  +T  +
Sbjct: 604 REKQLKYNEEHGITPRQIKKAKNLNVFAGTEGFAESGAGKEKSSATTPRPYVEQDSTATL 663

Query: 747 SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + D     +++ + +  ++  +K M  AA  L+F EAA+ RDE+ +++
Sbjct: 664 AADPIVQYMNRAQLEKSIERTKKLMQEAAKKLDFIEAAQYRDEVLKME 711


>gi|329943301|ref|ZP_08292075.1| excinuclease ABC, B subunit [Chlamydophila psittaci Cal10]
 gi|332287878|ref|YP_004422779.1| excinuclease ABC subunit B [Chlamydophila psittaci 6BC]
 gi|313848450|emb|CBY17454.1| UvrABC system protein B UvrB [Chlamydophila psittaci RD1]
 gi|325506601|gb|ADZ18239.1| excinuclease ABC subunit B [Chlamydophila psittaci 6BC]
 gi|328814848|gb|EGF84838.1| excinuclease ABC, B subunit [Chlamydophila psittaci Cal10]
          Length = 656

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 332/656 (50%), Positives = 436/656 (66%), Gaps = 11/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P GDQP AIA+L +G+ +    Q+LLG TGSGKTFT+A V+  + RP +V+A
Sbjct: 3   FELRAAFSPCGDQPEAIAKLTQGVRNHTPSQVLLGTTGSGKTFTIANVVANVNRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYF+SYYDYYQPEAY+ R DTYIEK   IN +ID++R 
Sbjct: 63  HNKTLAAQLYQEFKEFFPNNAVEYFISYYDYYQPEAYIARNDTYIEKSLLINSEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSSVSCIYGIGS E+Y+ M ++LK+G    +  L S LVK  Y+  
Sbjct: 123 SATRSILERRDTLIVSSVSCIYGIGSPENYTSMALELKVGREYPRAILASQLVKMNYQAS 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            +   R TFR  G  I+IFP++  D+A R+    + +  I    PLT   + +V +I +Y
Sbjct: 183 SVA-QRSTFRERGSVIDIFPAYESDLAIRLEFSNDTLSSIEYSDPLTMIPMESVTSIILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ RL   +   R +E  RL  R T+D+EM++ TG C+
Sbjct: 242 PGSHYVTPEAVREQAIRSIREELEERLAFFQD--RPIEQDRLFHRTTHDIEMIKETGFCK 299

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ T   PG PP  L +Y P++ LL +DESH T+PQI  MYRGD  RK +L EY
Sbjct: 300 GIENYSRHFTKSPPGAPPACLLDYFPDNFLLVIDESHQTLPQIRAMYRGDRSRKESLVEY 359

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  EL + QG IVEQIIRPTG+ DP  E
Sbjct: 360 GFRLPSAYDNRPLTYEEARKYFHNVIYVSATPGETELNESQGHIVEQIIRPTGIPDPIPE 419

Query: 561 IRSARTQVEDVYDEI--NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           IR A  QV+D+ +EI  +L+  Q  +IL+  +TK++AED+  +L E +I   Y+HS ++T
Sbjct: 420 IRPATGQVDDLLEEIRKHLSKSQA-KILVISITKKLAEDIAAFLSELDIAAAYLHSGIET 478

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER  I+ DLRLG  DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS +SLIQ  GRA
Sbjct: 479 AERTRILSDLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRA 538

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV+ KVI YAD  T SI+  + ET RRR+ QLE+NK + I P+ + + I    +PI  
Sbjct: 539 ARNVDGKVIFYADHKTLSIEQTLKETERRRQIQLEYNKANKITPKPIIKAIFA--NPI-- 594

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  +  D  Q  LS ++ +  +K     M  AA+   F+EAA+ RD++K  K
Sbjct: 595 PQGGKKEVQ-DTPQQPLSTQELEKLIKKYENLMQQAANAFRFDEAAKYRDKMKAAK 649


>gi|282878379|ref|ZP_06287171.1| excinuclease ABC, B subunit [Prevotella buccalis ATCC 35310]
 gi|281299565|gb|EFA91942.1| excinuclease ABC, B subunit [Prevotella buccalis ATCC 35310]
          Length = 678

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 327/672 (48%), Positives = 462/672 (68%), Gaps = 18/672 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL  GIH  +  Q+LLGVTGSGKTFT+A VI  +Q P ++++
Sbjct: 3   FKLTSKYKPTGDQPEAIQQLTDGIHRGDPAQVLLGVTGSGKTFTVANVINNVQMPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TD YIEK+ +IN++IDR+R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPENAVEYYVSYYDYYQPEAYLPTTDLYIEKDLAINDEIDRLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  +LL  R D IVVSSVSCIYG+G   + +  I+ +K G+ +++ + L  LV+  Y R
Sbjct: 123 SAVSALLSGRKDVIVVSSVSCIYGMGGPSAMTNSIITVKKGERLDRNDFLRKLVEALYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++  ++  R++ +  +I+ I E   +T  +++  E   I
Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYSNNI-LRITWWDEEIDSIEEVDSVTFHRLQEFEEYHI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  ++      G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTTKEQTEHAIRAIQDDLVKQVDYFNDLGDTIKAQRIKERVEYDIEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G+ P  L ++ P+D LL VDESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGREAGQRPYCLLDFFPQDFLLVVDESHVSVPQISAMYGGDRARKQNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE++ +   TI VSATP  +EL++ +G++VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLRFEEFHDMLHQTIYVSATPADYELQEAEGVVVEQIIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ DEI    ++  R+L+T LTKRMAE+LTEYL   ++R  Y+HS+V TL
Sbjct: 422 DVRPSENQIDDLLDEILQRTEREERVLVTTLTKRMAEELTEYLLNHDVRANYIHSDVATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIMTDLRAGVFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----- 734
           RNVN KVI+YADTIT+S+Q  IDET RRR  QL++N++H+I PQ + ++I   +      
Sbjct: 542 RNVNGKVIMYADTITESMQRTIDETARRRSIQLKYNEEHHITPQQIVKEIKNALPTSKEN 601

Query: 735 ------PILLE-----DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
                 P L       +A +   + D   L +++++ +  + +    M  AA +L+F +A
Sbjct: 602 EKDWRYPTLAAQQAYMEAESGAFAADPIVLRMTREQLEKSIANTTALMKQAAKDLDFLQA 661

Query: 784 ARIRDEIKRLKS 795
           A+ RDEI RL++
Sbjct: 662 AQYRDEIVRLQA 673


>gi|299140557|ref|ZP_07033695.1| excinuclease ABC subunit B [Prevotella oris C735]
 gi|298577523|gb|EFI49391.1| excinuclease ABC subunit B [Prevotella oris C735]
          Length = 682

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 336/674 (49%), Positives = 464/674 (68%), Gaps = 21/674 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL +GI      Q+LLGVTGSGKTFT+A VI    +P ++++
Sbjct: 3   FKLTSKYSPTGDQPEAIEQLTEGIKEGIPAQVLLGVTGSGKTFTVANVIANANKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPDNAVEYYVSYYDYYQPEAYLPTSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            A  +LL  R D IVVSSVSCIYG+G   +  + I+++K G ++++ E L  LV   Y R
Sbjct: 123 GAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQESIIKIKRGQTLDRNEFLRKLVDALYIR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RGTFRV GD+++I  ++ +++  RV+ + ++I+ I E    T   +   ET +I
Sbjct: 183 NDIDLQRGTFRVKGDTVDISMAYSDNI-LRVTWWDDEIDCIEEVDSTTFHSLERFETYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  R+      G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTEQAIRMIQDDLTERVEYFNSIGDNIKAQRVKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PGE P  L ++ P+D L+ +DESHV++PQI+ MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRQPGERPYCLLDFFPKDYLMVIDESHVSVPQINAMYGGDRARKQNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE++ L    I VSATP  +E+E+ +G+IVEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLRFEEFHSLINQIIYVSATPAKYEIEEAEGVIVEQIIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ DEI     +  R+L+T LTKRMAE+LTEYL    I+  Y+HS+V TL
Sbjct: 422 EVRPSENQIDDLMDEILTRIHRQERVLVTTLTKRMAEELTEYLLNHEIKANYIHSDVATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIMNDLRAGVFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI+YADTIT+S+Q  IDET RRR  QL++N+ H+I P+ +K++I   +  + +E
Sbjct: 542 RNVNGKVIMYADTITESMQKTIDETARRRSIQLKYNEDHHITPKQIKKQIGSSLASLSVE 601

Query: 740 -----DAATTN-----ISIDAQQLSLS-----KKKGKAHL-KSLRKQ---MHLAADNLNF 780
                DA T N     I ++ +  + +     K+  KA L KS+      M  AA +L+F
Sbjct: 602 SNDRKDAVTQNGKYPGIYLEPESGAFAADPIVKRMSKAELEKSIANTTALMKQAAKDLDF 661

Query: 781 EEAARIRDEIKRLK 794
            +AA+ RDEI RL+
Sbjct: 662 IQAAQYRDEIIRLQ 675


>gi|288926680|ref|ZP_06420593.1| excinuclease ABC subunit B [Prevotella buccae D17]
 gi|288336531|gb|EFC74904.1| excinuclease ABC subunit B [Prevotella buccae D17]
          Length = 680

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 326/674 (48%), Positives = 462/674 (68%), Gaps = 22/674 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL  GI      Q+LLGVTGSGKTFT+A VI+ +++P ++++
Sbjct: 3   FELTSKYKPTGDQPEAIRQLTDGIKDGMPAQVLLGVTGSGKTFTVANVIQNVEKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN+ ID++R 
Sbjct: 63  HNKTLAAQLYQEMKGFFPRNAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDDIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  +LL  R D IVVSSVSCIYG+G   +  Q +++LK G+++++ E L  LV   Y R
Sbjct: 123 SAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQQSVIKLKKGETLDRNEFLRRLVDALYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD++++F ++ ++V  RV+ + ++I+ I E    T  ++ + E+ ++
Sbjct: 183 NDIDLQRGCFRVKGDTVDVFMAYSDNV-LRVTWWDDEIDAIEEVNAETFHRVESFESYEL 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  ++    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTEQAIRMIQDDLVKQVDYFNEIGDTIKAQRIKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  GE P  L ++ P+D LL VDESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRQAGERPYCLLDFFPKDFLLVVDESHVSVPQISAMYGGDRARKQNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPL+F+E+  L   TI VSATP  +EL + +G++VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLKFDEFLSLLHQTIYVSATPADFELREAEGVVVEQIIRPTGLLDPQI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ DEI   + +  R+L+T LTKRMAE+LTEYL   N+R  Y+HS+V TL
Sbjct: 422 DVRPSENQIDDLLDEILTRSHRNERVLVTTLTKRMAEELTEYLLNNNVRANYIHSDVATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIMNDLRAGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI+YADTIT+S+Q  IDET RRR  QL++N++H I PQ + + I   + P   +
Sbjct: 542 RNVNGKVIMYADTITESMQRTIDETARRRSIQLKYNEEHGITPQQIVKAIGSAL-PTKGD 600

Query: 740 DAAT-------------------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
           +  T                      + D   + +++++ +  + +    M  AA +L+F
Sbjct: 601 EEGTAAARSGHYPNLQAYLEPDSAAFAADPIVMHMTREQLEKSIANTTALMKQAAKDLDF 660

Query: 781 EEAARIRDEIKRLK 794
            +AA+ RDEI RL+
Sbjct: 661 IQAAQYRDEIIRLQ 674


>gi|118575739|ref|YP_875482.1| excinuclease helicase subunit [Cenarchaeum symbiosum A]
 gi|118194260|gb|ABK77178.1| excinuclease helicase subunit [Cenarchaeum symbiosum A]
          Length = 649

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 329/657 (50%), Positives = 442/657 (67%), Gaps = 26/657 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +++ P+GDQP AI  L  G+  ++ +Q LLGVTGSGKTFT+A VI    +  +V++
Sbjct: 7   FDLVSEFAPTGDQPEAIDALASGVR-KKSLQTLLGVTGSGKTFTVANVIARTGKNTLVIS 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E K FFP N V YFVSYYDYYQPE+Y+ +TDTYIEK++ +NEQI++MR 
Sbjct: 66  HNKTLAAQLYAELKQFFPGNNVGYFVSYYDYYQPESYMVQTDTYIEKDTVVNEQIEKMRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
             T  LL     IVVS+VSCIY +G+ + + +M + L+ G    + +++  LV  +Y+R 
Sbjct: 126 ETTAMLLSGEPTIVVSTVSCIYSLGNPDDWDEMAITLEEGRGAGRADVIRRLVDARYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ +  G FRV GD+I++ P++ +DV  R+SMFG+++E IS    +T  + + V TI+++
Sbjct: 186 DVELAPGNFRVRGDTIDVIPAYSQDVV-RISMFGDEVERISVLDRMTMDEKQRVGTIRVF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HY+        A+  IK ELK RL EL    R LE QRLE R +YDLEM+E  G C 
Sbjct: 245 PAKHYLIAGDARKRALGSIKSELKSRLPEL----RELERQRLEMRTSYDLEMIEELGYCS 300

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GR PGEP   L ++   D LL +DESHVT+PQ+ GMY+GD  RK  L  Y
Sbjct: 301 GIENYSRHFDGRKPGEPAFCLLDFFGPDFLLVIDESHVTLPQLHGMYKGDHSRKGELITY 360

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+       I VSATP  +E  +    IVEQ++RPTGL+DP  E
Sbjct: 361 GFRLPSAYDNRPLKFEEFEGYLKNVIFVSATPSEYERTKS-AEIVEQLVRPTGLLDPVAE 419

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EI   A++  R L+T LTKRMAEDL E+L +R +RVRYMHSE++ L+
Sbjct: 420 IRPTKGQMDDLVSEIGACAKRDERALVTTLTKRMAEDLAEFLSKRKVRVRYMHSEIEGLQ 479

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E+IR LRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLR+ TSLIQT GRAAR
Sbjct: 480 RTELIRQLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNMTSLIQTFGRAAR 539

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD  T S++ A+DET RRRE+Q E+N +H I P+S+ + I E    + L+D
Sbjct: 540 NSAGRVIMYADRTTASMKNALDETARRRERQSEYNVQHGITPRSITKAIPE--QTVKLDD 597

Query: 741 A---ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               +  +IS +  +L  S K+               A+ L+FE+A   RD+I+RL+
Sbjct: 598 VKHKSPHDISREIIELEASMKR--------------HAEELSFEKAIECRDQIRRLR 640


>gi|301321364|gb|ADK70007.1| excinuclease ABC, B subunit [Mycoplasma mycoides subsp. mycoides SC
           str. Gladysdale]
          Length = 665

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 322/656 (49%), Positives = 436/656 (66%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ T Y PSGDQ  AI +L K I   +K Q+LLG TG+GKTFT+A +I    + A+V+A
Sbjct: 8   YKLVTKYKPSGDQNQAIEKLNKAIIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K  FP N VEYFVS +D++QPEAY+P  D YI+K+S  N ++D MR 
Sbjct: 68  HNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +LL RND IVV+SV+ ++ + +   YS   ++LK+G  +++ ELL+ LV+  Y R 
Sbjct: 128 SACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI    G+F   GD ++I P  + ++ +R+S+F ++IE I     +T   + N+ T+ I+
Sbjct: 188 DIENQLGSFSAKGDVVKIVPGWVNNIMFRISLFDDEIESIHTLNTITNSILDNITTVTIH 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               Y+TP+  L T    I+ EL  RL EL+ E +LLEAQRLEQR  YDLE LE  G C 
Sbjct: 248 PAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L  R+ G+ P  L +Y   D +  VDESH+T+PQI GMY  D  RK TL EY
Sbjct: 308 GIENYSSHLDFRSKGQRPYVLLDYFNNDFITIVDESHITLPQIRGMYNTDRSRKLTLVEY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+N L    I  SATPG +EL+     +V+QIIRPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVVQQIIRPTGLLDPQIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+ +EI+L   Q  R+ +T LT RM+EDLT +L E+NI+V Y+HSE+KTLE
Sbjct: 428 IRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+ DLR G +DV+VG+NLLREGLD+PE  LV ILDADK+GFLR+  SLIQTIGR AR
Sbjct: 488 RSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K I+YADT+++++  AI ET RRR+ Q E NKKHNI P+++ + I E    IL E 
Sbjct: 548 NVNGKAIMYADTVSQAMDEAIKETNRRRKIQEEFNKKHNIVPKTISKAISE---SILSEQ 604

Query: 741 AATTNISIDAQQLSLSKKKG-KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T       +    K +  +  + +LR++M  AA  L+FE AA +RD I  L++
Sbjct: 605 TKKTLAKAKKIKDKKQKLQTIQQTIDNLRQEMLQAAKELDFERAAILRDTIIELEN 660


>gi|224024032|ref|ZP_03642398.1| hypothetical protein BACCOPRO_00749 [Bacteroides coprophilus DSM
           18228]
 gi|224017254|gb|EEF75266.1| hypothetical protein BACCOPRO_00749 [Bacteroides coprophilus DSM
           18228]
          Length = 677

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 329/672 (48%), Positives = 457/672 (68%), Gaps = 23/672 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++DY P+GDQP AIAQL  G+ +    Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELKSDYQPTGDQPEAIAQLTDGVLNGLPAQTLLGVTGSGKTFTIANVIRNVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYGEFKAFFPNNAVEYYVSYYDYYQPEAYLPSTDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D IVVSSVSCIYG+G+   +   +++++ G  +++  LL  LV   Y R
Sbjct: 123 AATSALLSGRKDVIVVSSVSCIYGMGNPADFYNNVIEVRRGKRMDRNVLLRQLVDSLYTR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D  + RG FRV GD+++IF ++ + +  R+  + ++I+ I E  P TG +I   +  KI
Sbjct: 183 NDAELNRGNFRVKGDTVDIFLAYTDHI-LRIMFWDDEIDGIEEVDPDTGARISTFDEYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T R +   A+  I+++L +++   E+ G+  EA+RL++R+TYD+EML   G C
Sbjct: 242 YPANLFMTTRESTLRAIHQIEDDLTLQVQHFEETGKFYEAKRLKERVTYDMEMLRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGREAGTRPYCLLDFFPKDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL F+E+  +    I VSATP  +EL++ +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLTFDEFREMARQVIYVSATPAEYELQESEGVVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI    +   R+L+T LTKRMAE+LT+YL    IR  Y+HS+V+TL
Sbjct: 422 EVRPSLNQIDDLMEEIQQRIEAQERVLVTTLTKRMAEELTDYLSRHGIRCTYIHSDVETL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ +LR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMEELRQGIFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI+YAD IT S++  IDET RRREKQL +N+ + I P+ ++         ILLE
Sbjct: 542 RNVNGKVIMYADKITDSMRQTIDETNRRREKQLAYNEANGITPRQIRRSHTN----ILLE 597

Query: 740 DAATT-----------------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
           +                      ++ D     +SK + K  +   RK M  AA  L+F E
Sbjct: 598 NQEAKAGQGKKAKEYADMPDGLTMAADPIVEYMSKDQLKRSVDRTRKLMQEAARKLDFIE 657

Query: 783 AARIRDEIKRLK 794
           AA+ RDE+ RL+
Sbjct: 658 AAQYRDELIRLE 669


>gi|330447708|ref|ZP_08311356.1| excinuclease ABC, B subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491899|dbj|GAA05853.1| excinuclease ABC, B subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 656

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 316/620 (50%), Positives = 426/620 (68%), Gaps = 2/620 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP A+A+L+  I S    Q L GVTGSGKTFTMA +I  +QRP +++A
Sbjct: 6   FILHSAYPPSGDQPEALARLIGNIQSGVPHQTLQGVTGSGKTFTMANMIHRLQRPTLILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K FFP NAVEYFVSYYDYYQPE Y+P +D +I K+S+INEQ++R+R 
Sbjct: 66  HNKTLAAQLYSEMKRFFPENAVEYFVSYYDYYQPEVYIPGSDRFIRKDSAINEQLERLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+SL+ER D IVV+SVS IYG+G  E Y  + + L +G ++++++ +  L   QY R 
Sbjct: 126 STTKSLIERKDVIVVASVSAIYGLGDPEQYRAVQIPLSVGMTLDREDFIQRLAALQYSRC 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  I R TFRV G+  +IFP+  E  A RV MF + IE++    PLTG+ + ++E   + 
Sbjct: 186 ERTIERATFRVHGEIFDIFPADSESKAVRVVMFDDTIEKLQWIDPLTGKVLGDIEHYFVS 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y   R  L  A   I+++L+ R+ EL  + R++EA RL +R  +D+EM++  G C 
Sbjct: 246 PKTLYAASREKLQKASIEIEKDLEARVAELNDQNRIVEAARLYERTMHDIEMMQQLGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS YL  R+P  PP TL +Y+P+D LLF+DESHV IPQIS MYR D  RK TL +Y
Sbjct: 306 GLENYSCYLNDRDPALPPTTLLDYLPKDGLLFIDESHVMIPQISAMYRSDESRKETLIDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPL F E+  L+P T+ VSATPG +EL++ Q  + EQIIRPTGL+DP VE
Sbjct: 366 GFRLPSAKNNRPLMFSEFEKLKPQTVFVSATPGEYELKKSQQHVTEQIIRPTGLLDPIVE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   +Q ED+  EI    Q+  R+L+T LTK+ AE L + + E  I+V Y+HS+VKT +
Sbjct: 426 VRPLASQTEDLLKEIAERTQKDERVLVTTLTKKSAEALYDVMTELGIKVSYIHSDVKTEQ 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR GK+DVL+GINLLREGLDIPE  LVA+L+AD  GFLRS  +LIQ IGRAAR
Sbjct: 486 RVEIIDDLRAGKYDVLIGINLLREGLDIPEASLVAVLNADHAGFLRSTQALIQIIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI--MEVIDPILL 738
           N N K ILYAD IT ++Q A+ E+ +RRE+Q  +N+ H I P S + +   +E  +P   
Sbjct: 546 NANGKAILYADKITPAMQQAMSESQQRRERQEAYNQAHQITPASSQRQKANIENQEPAQH 605

Query: 739 EDAATTNISIDAQQLSLSKK 758
             A   N+S   QQ++ ++K
Sbjct: 606 TTAFCANLSELCQQITATEK 625


>gi|42561460|ref|NP_975911.1| excinuclease ABC subunit B [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|81829339|sp|Q6MS38|UVRB_MYCMS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|42492959|emb|CAE77553.1| Excinuclease ABC subunit B [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
          Length = 671

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 322/656 (49%), Positives = 436/656 (66%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ T Y PSGDQ  AI +L K I   +K Q+LLG TG+GKTFT+A +I    + A+V+A
Sbjct: 14  YKLVTKYKPSGDQNQAIEKLNKAIIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K  FP N VEYFVS +D++QPEAY+P  D YI+K+S  N ++D MR 
Sbjct: 74  HNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRL 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +LL RND IVV+SV+ ++ + +   YS   ++LK+G  +++ ELL+ LV+  Y R 
Sbjct: 134 SACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI    G+F   GD ++I P  + ++ +R+S+F ++IE I     +T   + N+ T+ I+
Sbjct: 194 DIENQLGSFSAKGDVVKIVPGWVNNIMFRISLFDDEIESIHTLNTITNSILDNITTVTIH 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               Y+TP+  L T    I+ EL  RL EL+ E +LLEAQRLEQR  YDLE LE  G C 
Sbjct: 254 PAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCS 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L  R+ G+ P  L +Y   D +  VDESH+T+PQI GMY  D  RK TL EY
Sbjct: 314 GIENYSSHLDFRSKGQRPYVLLDYFNNDFITIVDESHITLPQIRGMYNTDRSRKLTLVEY 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+N L    I  SATPG +EL+     +V+QIIRPTGL+DP +E
Sbjct: 374 GFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVVQQIIRPTGLLDPQIE 433

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+ +EI+L   Q  R+ +T LT RM+EDLT +L E+NI+V Y+HSE+KTLE
Sbjct: 434 IRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLE 493

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+ DLR G +DV+VG+NLLREGLD+PE  LV ILDADK+GFLR+  SLIQTIGR AR
Sbjct: 494 RSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVAR 553

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K I+YADT+++++  AI ET RRR+ Q E NKKHNI P+++ + I E    IL E 
Sbjct: 554 NVNGKAIMYADTVSQAMDEAIKETNRRRKIQEEFNKKHNIVPKTISKAISE---SILSEQ 610

Query: 741 AATTNISIDAQQLSLSKKKG-KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T       +    K +  +  + +LR++M  AA  L+FE AA +RD I  L++
Sbjct: 611 TKKTLAKAKKIKDKKQKLQTIQQTIDNLRQEMLQAAKELDFERAAILRDTIIELEN 666


>gi|291059535|gb|ADD72270.1| excinuclease ABC subunit B [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 677

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 319/671 (47%), Positives = 450/671 (67%), Gaps = 11/671 (1%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           I + +K +  F++   + P+GDQ AAI  L++G+H+  + Q L GVTGSGKTFT+A VI 
Sbjct: 3   ITDTAKHMKEFKLHASFQPAGDQIAAIDALVRGLHAGARFQTLKGVTGSGKTFTVANVIA 62

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +Q+P +V++ NK L+AQLY EFK FFP NAVEYFVSYYDYYQPE+YVP  D YIEK++S
Sbjct: 63  RVQKPTLVISHNKTLSAQLYREFKGFFPDNAVEYFVSYYDYYQPESYVPARDLYIEKDAS 122

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN +I+RMR SAT SL+ER D IVV++VSCIYG+G  ES+  + + +++   ++ ++L  
Sbjct: 123 INAEINRMRLSATFSLMERRDVIVVATVSCIYGLGLPESWRDLRIHVEVNQCLDLEDLKR 182

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV  QY+R D  +  G FRV GD IEIFP++LE+  +R+    + +  I   +P++G  
Sbjct: 183 QLVSLQYERNDAVLECGRFRVRGDVIEIFPAYLEEF-YRIECDWDRVVRIRRIHPVSGAV 241

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +R  E + +Y   H+V     +  AM  I++EL  RL++L +E +L EA RL+ R  YDL
Sbjct: 242 LREFEELTVYPAKHFVLKEDAIPRAMDRIRQELDERLVQLTQENKLAEAARLKTRTEYDL 301

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML   G C  IENYS  + GR  GEPP TL  Y P+D +LFVDESHVT+PQ+  MY GD
Sbjct: 302 EMLGEMGYCHGIENYSAPIAGRKSGEPPVTLLHYFPKDFVLFVDESHVTLPQLGAMYEGD 361

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK  L ++GFRLP   DNRPL+  E+  L    + +SATPG  E  Q    IVEQ+IR
Sbjct: 362 RVRKQNLIDFGFRLPCARDNRPLKDSEFEALLNQAVFISATPGVKERTQSVQ-IVEQLIR 420

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DP +E+R    Q+ED+   +   + +  R L+  LTK+MAEDLT+Y     IR +
Sbjct: 421 PTGLLDPCIEVRKTDGQIEDICQRVKACSARNERSLVLTLTKKMAEDLTDYFNGLGIRTK 480

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSE++T+ER+EI+  LR G+ +VLVGINLLREG+D+PE   +AILDA+  GFLRS TS
Sbjct: 481 YVHSEIETIERVEILTSLRAGECEVLVGINLLREGIDLPEVAFIAILDANIVGFLRSTTS 540

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQ IGRAARN    V++YAD I+ +++ AI+ET RRR+ Q+ +N+ H I P+++K+ I 
Sbjct: 541 LIQIIGRAARNARGTVVMYADAISDAMREAIEETARRRKIQMAYNRAHGITPRTIKKSIE 600

Query: 731 EVI--DPILLEDAATTNI-----SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
           +++  +  + +DAA   +     + DA   + + +  K  +++LR  M + A  L FEEA
Sbjct: 601 DILVREQEVKKDAARVQVAPLLRAADADVRTHAAR--KKMVQALRLHMKVCARELRFEEA 658

Query: 784 ARIRDEIKRLK 794
           A IRD+I +L+
Sbjct: 659 ALIRDKILQLQ 669


>gi|160888163|ref|ZP_02069166.1| hypothetical protein BACUNI_00571 [Bacteroides uniformis ATCC 8492]
 gi|317478936|ref|ZP_07938083.1| excinuclease ABC [Bacteroides sp. 4_1_36]
 gi|156862298|gb|EDO55729.1| hypothetical protein BACUNI_00571 [Bacteroides uniformis ATCC 8492]
 gi|316904913|gb|EFV26720.1| excinuclease ABC [Bacteroides sp. 4_1_36]
          Length = 686

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 327/676 (48%), Positives = 463/676 (68%), Gaps = 23/676 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 4   FELTSAYQPTGDQPEAIAQLTEGVREGLPAQTLLGVTGSGKTFTIANVIANINKPTLILS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 64  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 123

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   +   +++++ G +  +   L  LV   Y R
Sbjct: 124 AATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQGKNFSRNVFLRRLVDSLYVR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV+ +G++++ I E  P++G  +   +  KI
Sbjct: 184 NDIDLNRGNFRVKGDTVDIYLAYADNL-LRVTFWGDEVDSIEEVDPMSGVTVAKFDAYKI 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E EGR  EA+RL++R+TYD+EM+   G C
Sbjct: 243 YPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAKRLQERVTYDMEMIRELGHC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ PED L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 303 SGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 362

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+F+E+  +    I VSATP  +EL + +GI+VEQ+IRPTGL+DP +
Sbjct: 363 YGFRLPAAMDNRPLKFDEFEEMAKQVIYVSATPADYELMKSEGIVVEQVIRPTGLLDPII 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LTEYL   N++  Y+HS+V TL
Sbjct: 423 EVRPSHNQIDDLMEEIQVRIEKNERTLVTTLTKRMAEELTEYLLNNNVKCNYIHSDVDTL 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 483 ERVKIMGDLREGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK------------- 726
           RNVN  VI+YAD IT S+QL IDET RRREKQL++N++H I PQ +K             
Sbjct: 543 RNVNGMVIMYADKITDSMQLTIDETNRRREKQLKYNEEHGITPQQIKKAKNLNVFATNEA 602

Query: 727 --------EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
                   EK         +E  +T+ ++ D     +S+K+ +  ++  +K M  AA  L
Sbjct: 603 SGEAVLSSEKFTSSTPRPYVEQESTSTMAADPIVQYMSRKQLEKSIERTKKLMQEAAKKL 662

Query: 779 NFEEAARIRDEIKRLK 794
           +F EAA+ RDE+ +++
Sbjct: 663 DFIEAAQYRDEVLKME 678


>gi|167762886|ref|ZP_02435013.1| hypothetical protein BACSTE_01250 [Bacteroides stercoris ATCC
           43183]
 gi|167699226|gb|EDS15805.1| hypothetical protein BACSTE_01250 [Bacteroides stercoris ATCC
           43183]
          Length = 716

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 332/695 (47%), Positives = 472/695 (67%), Gaps = 25/695 (3%)

Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181
           I+ P    S+ ++  ++  F++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGK
Sbjct: 17  IFIPF--LSLPDNPDEMNKFELTSAYRPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGK 74

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
           TFT+A VI  + +P ++++ NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +
Sbjct: 75  TFTIANVIANINKPTLILSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSS 134

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           DTYIEK+ +IN++ID++R +AT +LL  R D +VVSSVSCIYG+G+   +   +++++ G
Sbjct: 135 DTYIEKDLAINDEIDKLRLAATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQG 194

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
            +  +   L  LV   Y R DI + RG FRV GD+++I+ ++ +++  R+  +G++++ I
Sbjct: 195 KTYSRNVFLRRLVDSLYVRNDIDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEVDSI 253

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
            E  P++G  I   +  KIY  + ++T +     A+  I+++L  ++   E EGR  EA+
Sbjct: 254 EEVDPVSGVTIARFDAYKIYPANLFMTTKEATLRAIHEIEDDLHKQVQWFESEGRPFEAK 313

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
           RL++R+TYD+EML   G C  IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++
Sbjct: 314 RLQERVTYDMEMLRELGHCSGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSV 373

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           PQI  MY GD  RK  L EYGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q 
Sbjct: 374 PQIRAMYGGDRARKTNLVEYGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELMQS 433

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
           +GI+VEQ+IRPTGL+DP +E+R +  Q++D+ +EI L  ++  R L+T LTKRMAE+LTE
Sbjct: 434 EGIVVEQVIRPTGLLDPIIEVRPSHNQIDDLMEEIQLRIERNERTLVTTLTKRMAEELTE 493

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           YL   +++  Y+HS+V TLER++I+ DLR G++DVLVG+NLLREGLD+PE  LVAILDAD
Sbjct: 494 YLLNNSVKCNYIHSDVDTLERVKIMSDLREGEYDVLVGVNLLREGLDLPEVSLVAILDAD 553

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
           KEGFLRS  SL QT GRAARNVN  VI+YAD IT+S+QL IDET RRREKQL++N++H I
Sbjct: 554 KEGFLRSHRSLTQTAGRAARNVNGMVIMYADKITESMQLTIDETNRRREKQLKYNEEHGI 613

Query: 721 NPQSV---------------------KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
            PQ +                     KEK         +E  ++T ++ D     +S+ +
Sbjct: 614 TPQQIRKAKNLNVFAGTEGFAEGGTGKEKSPATAPRPYVEQESSTTVAADPIVRYMSRAQ 673

Query: 760 GKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +  ++  RK M  AA  L+F EAA+ RDE+ +++
Sbjct: 674 LEKSIERTRKLMQEAAKKLDFIEAAQYRDEVLKME 708


>gi|157364900|ref|YP_001471667.1| excinuclease ABC subunit B [Thermotoga lettingae TMO]
 gi|189038008|sp|A8F8W9|UVRB_THELT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|157315504|gb|ABV34603.1| excinuclease ABC, B subunit [Thermotoga lettingae TMO]
          Length = 656

 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 330/656 (50%), Positives = 447/656 (68%), Gaps = 12/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI +L++GI    + Q L+GVTGSGKTFTMA VI  + RPA+V++
Sbjct: 2   FKLVSDYEPTGDQPQAIDRLVEGIKKGYRFQTLIGVTGSGKTFTMANVISRLNRPALVIS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFPHN VEYF+SYYDYYQPEAYVP  D YIEK + IN+ + RMR 
Sbjct: 62  PNKTLAAQLYGEFKTFFPHNRVEYFISYYDYYQPEAYVPTKDLYIEKNADINDVLVRMRM 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA +S+  R D +VV+SVS IY  G    + +M +QL  G  +    +   L K  Y+R 
Sbjct: 122 SALKSVRTRRDVVVVASVSSIYASGDPSDFDRMNIQLSTGLKISPHAVAQHLAKIGYERS 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +   ++G FR+ GD +EI+P++ +D   R+  FG+ ++ I  F  L    +  ++ I IY
Sbjct: 182 NEITVKGCFRLRGDVLEIYPTY-QDEGIRIEFFGSVVDRIETFDKLNRSPLEELQKIIIY 240

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               +VT    L  A++ IK EL  RL EL+ +G++LEAQRL+QR  +DLE+L   G C 
Sbjct: 241 PAIEFVTTEEKLKRAVESIKNELDQRLTELKNQGKILEAQRLQQRTMHDLELLSALGYCP 300

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GR PGEPP TL +Y  +D L+F+DESH+ +PQ+  M+RG+  RK +L EY
Sbjct: 301 GIENYSRHFDGRKPGEPPYTLLDYFDDDVLVFLDESHIAVPQLRAMWRGEHSRKKSLVEY 360

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+    P  I VSATPG +E  Q    IVEQIIRPTGL+DP VE
Sbjct: 361 GFRLPSAFDNRPLTFEEFLKKVPQIIFVSATPGPFEY-QVSEQIVEQIIRPTGLIDPEVE 419

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + QV+D+  EI    ++G R L+TVLTK+ AE L+EYL E  I+  Y+HSE+  +E
Sbjct: 420 VRPTKYQVDDLISEIKKVVERGERALITVLTKKTAEKLSEYLVEMGIKSLYIHSELDAIE 479

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIE+++ LR G  D +VGINLLREGLD+PE  LVAILD+DKEGFLRS+T+LIQ IGR AR
Sbjct: 480 RIEVLKKLRRGDVDAVVGINLLREGLDLPEVSLVAILDSDKEGFLRSETTLIQIIGRVAR 539

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE- 739
           N+N KV++YAD +T ++Q AIDET RRR+ Q+E+N+K+ I P++       ++ P+ +E 
Sbjct: 540 NLNGKVLMYADRVTPAMQRAIDETNRRRKIQMEYNEKYGITPKT-------IVKPLQIEI 592

Query: 740 -DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +       ID  QL+    K + +L  L ++M+ AA  L +E+AA++RDEI RL+
Sbjct: 593 FEKFMEKPEIDYHQLAKDLSK-EEYLSLLEEEMYRAASELRYEDAAKLRDEIFRLR 647


>gi|281423195|ref|ZP_06254108.1| excinuclease ABC subunit B [Prevotella oris F0302]
 gi|281402531|gb|EFB33362.1| excinuclease ABC subunit B [Prevotella oris F0302]
          Length = 682

 Score =  629 bits (1621), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 335/674 (49%), Positives = 464/674 (68%), Gaps = 21/674 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL +GI      Q+LLGVTGSGKTFT+A VI    +P ++++
Sbjct: 3   FKLTSKYSPTGDQPEAIEQLTEGIKEGAPAQVLLGVTGSGKTFTVANVIANANKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPNNAVEYYVSYYDYYQPEAYLPTSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            A  +LL  R D IVVSSVSCIYG+G   +  + I+++K G ++++ E L  LV   Y R
Sbjct: 123 GAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQESIIKIKRGQTLDRNEFLRKLVDALYIR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RGTFRV GD+++I  ++ +++  RV+ + ++I+ I E    T   + + ET +I
Sbjct: 183 NDIDLQRGTFRVKGDTVDISMAYSDNI-LRVTWWDDEIDCIEEVDSATFHSLEHFETYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A+  I+++L  R+      G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTERAICMIQDDLTERVEYFNSIGDNIKAQRVKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PGE P  L ++ P+D L+ +DESHV++PQI+ MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRQPGERPYCLLDFFPKDYLMVIDESHVSVPQINAMYGGDRARKQNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE++ L    I VSATP  +E+E+ +G+IVEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLRFEEFHSLINQIIYVSATPAKYEIEEAEGVIVEQIIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ DEI     +  R+L+T LTKRMAE+LTEYL    I+  Y+HS+V TL
Sbjct: 422 EVRPSENQIDDLMDEILTRIHRQERVLVTTLTKRMAEELTEYLLNHEIKANYIHSDVATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIMNDLRAGVFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI+YADTIT+S+Q  IDET RRR  QL++N+ H+I P+ +K++I   +  + +E
Sbjct: 542 RNVNGKVIMYADTITESMQKTIDETARRRSIQLKYNEVHHITPKQIKKQIGSSLASLSVE 601

Query: 740 -----DAATTN-----ISIDAQQLSLS-----KKKGKAHL-KSLRKQ---MHLAADNLNF 780
                DA   N     I ++ +  + +     K+  KA L KS+      M  AA +L+F
Sbjct: 602 SNDRKDAVIQNGKYPGIYLEPESGAFAADPIVKRMSKAELEKSIANTTALMKQAAKDLDF 661

Query: 781 EEAARIRDEIKRLK 794
            +AA+ RDEI RL+
Sbjct: 662 IQAAQYRDEIIRLQ 675


>gi|332882356|ref|ZP_08449984.1| excinuclease ABC, B subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332679740|gb|EGJ52709.1| excinuclease ABC, B subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 673

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 331/666 (49%), Positives = 469/666 (70%), Gaps = 14/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++  DY P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI+ + +P ++++
Sbjct: 4   FELTADYSPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIQNINKPTLILS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 64  HNKTLAAQLYGEFKSFFPHNAVEYYVSYYDYYQPEAYIPSTDTYIEKDLAINDEIDKLRL 123

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+  ++   +++LK G  +++   L  LV   Y R
Sbjct: 124 AATSALLSGRKDVVVVSSVSCIYGMGNPAAFYDNVIELKRGKLLDRNVFLRRLVDSLYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ + RG FRV GD+++I+ ++  D   RV+ + ++I+ I E  P++  ++ + +  +I
Sbjct: 184 NDLNLERGCFRVKGDTVDIYLAY-SDNLLRVTFWDDEIDAIEEVDPVSCLRLGSFDEYRI 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T + +   A+  I+++L  ++   E+ G+  EA+RL +R+TYD+EM+   G C
Sbjct: 243 YPANLFMTTKESTAKAIHQIEDDLHKQVSYFEEIGKPYEAKRLYERVTYDMEMIRELGHC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ PED L+ +DESHV++PQI+ MY GD  RK  L E
Sbjct: 303 SGIENYSRYFDGREAGTRPYCLLDFFPEDFLIVIDESHVSVPQINAMYGGDRARKKNLVE 362

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L    I VSATP  +EL+Q +GI+VEQ+IRPTGL+DP +
Sbjct: 363 YGFRLPAAMDNRPLKFEEFQQLAKQVIYVSATPADYELQQSEGIVVEQVIRPTGLLDPII 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  QV+D+ +EI    ++  RIL+T LTKRMAE+LT+Y  + +IR  Y+HS+V TL
Sbjct: 423 EVRPSLNQVDDLMEEIQQRIEKDERILVTTLTKRMAEELTDYFMKHDIRTNYIHSDVDTL 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 483 ERVQIMDDLRAGRFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE--KIMEVIDPIL 737
           RNV+ K I+YAD IT S+Q  IDET RRREKQL++N++H I PQ +K+  K+ ++I    
Sbjct: 543 RNVHGKAIMYADRITDSMQKTIDETNRRREKQLKYNEEHGITPQQIKKGRKMTDLISAN- 601

Query: 738 LEDAATTNISIDAQQLS---------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            E  A T   I+ ++           +++ + +  ++  RK M  AA  L+F EAA+ RD
Sbjct: 602 AEAHAETRAYIEPEERMAVADPIMEYMTRDQLEKSIERSRKLMQEAAKKLDFIEAAQYRD 661

Query: 789 EIKRLK 794
           E+ R++
Sbjct: 662 EMLRME 667


>gi|319901960|ref|YP_004161688.1| Excinuclease ABC subunit B [Bacteroides helcogenes P 36-108]
 gi|319416991|gb|ADV44102.1| Excinuclease ABC subunit B [Bacteroides helcogenes P 36-108]
          Length = 684

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 330/675 (48%), Positives = 461/675 (68%), Gaps = 22/675 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIAQL +GI      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 4   FELTSTYKPTGDQPEAIAQLTEGIREGLPAQTLLGVTGSGKTFTIANVIANINKPTLILS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 64  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 123

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT SLL  R D +VVSSVSCIYG+G+   +   +++++ G +  +   L  LV   Y R
Sbjct: 124 AATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEVQQGHNFSRNVFLRRLVDSLYVR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ + RG FRV GD+++I+ ++ +++  R+  +G++I+ I E  P++G  I   +  KI
Sbjct: 184 NDMDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEIDSIEEVDPISGVSIAKFDGYKI 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  +    E EGR  EA+RL++R+TYD+EM+   G C
Sbjct: 243 YPANLFMTTKEATLRAIHEIEDDLHKQTQWFENEGRPFEAKRLQERVTYDMEMIRELGHC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ PED L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 303 SGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKVNLVE 362

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+F+E+  +    I VSATP  +EL + +GI+VEQ+IRPTGL+DP +
Sbjct: 363 YGFRLPAAMDNRPLKFDEFEAMAKQVIYVSATPADYELVRSEGIVVEQVIRPTGLLDPII 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LTEYL   N++  Y+HS+V TL
Sbjct: 423 EVRPSHNQIDDLMEEIQVRIEKKERTLVTTLTKRMAEELTEYLLNNNVKCNYIHSDVDTL 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR GK+DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 483 ERVKIMSDLREGKYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE------------ 727
           RNVN  VI+YAD IT+S+QL IDET RRREKQL +N++H I PQ +++            
Sbjct: 543 RNVNGMVIMYADKITESMQLTIDETNRRREKQLRYNEEHGIIPQQIRKAKNLNVFAGAES 602

Query: 728 -------KIMEVIDP-ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
                  K    + P   +E    + I+ D     +S+ + +  ++  RK M  AA  LN
Sbjct: 603 SAETTGGKNKATVTPRPYVEQNTMSAIAADPIMQYMSRAQLEKSIERTRKLMQEAAKKLN 662

Query: 780 FEEAARIRDEIKRLK 794
           F EAA+ RDE+ +++
Sbjct: 663 FIEAAQYRDEVLKME 677


>gi|29345980|ref|NP_809483.1| excinuclease ABC subunit B [Bacteroides thetaiotaomicron VPI-5482]
 gi|298387375|ref|ZP_06996928.1| excinuclease ABC subunit B [Bacteroides sp. 1_1_14]
 gi|81842293|sp|Q8AA95|UVRB_BACTN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|29337874|gb|AAO75677.1| excinuclease ABC subunit B [Bacteroides thetaiotaomicron VPI-5482]
 gi|298260044|gb|EFI02915.1| excinuclease ABC subunit B [Bacteroides sp. 1_1_14]
          Length = 677

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 336/668 (50%), Positives = 462/668 (69%), Gaps = 15/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT SLL  R D +VVSSVSCIYG+G+   + + +++++ G  +++   L  LV   Y R
Sbjct: 123 AATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMLDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++IF ++  D   RV+ +G++I+ I E  P+TG      E  KI
Sbjct: 183 NDIDLNRGNFRVKGDTVDIFLAY-SDTLLRVTFWGDEIDGIEEVDPITGVTTAPFEAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D LL +DESHV++PQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLLVIDESHVSVPQVRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEEMTKQVIYVSATPAEYELIQSEGIVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+LTEYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELTEYLLNNNVRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI----- 733
           RNVN KVI+YAD IT S++L IDET RRREKQL +N+ + I PQ +K+ + + V      
Sbjct: 542 RNVNGKVIMYADKITDSMRLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGSPGS 601

Query: 734 --DPILLEDAA-----TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
             D +L E  A     + NI+ D     +SK + +  ++  RK M  AA  L F EAA+ 
Sbjct: 602 EADELLKEKHAYVEPSSPNIAADPIVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQY 661

Query: 787 RDEIKRLK 794
           R+E+ +L+
Sbjct: 662 RNELLKLE 669


>gi|289064128|gb|ADC80465.1| putative UvrABC system protein B [Comamonas testosteroni]
          Length = 658

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 302/590 (51%), Positives = 417/590 (70%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + ++Y P+GDQP AIA+LL  +      Q L G+TGSGKTFTMA VI  ++RP +++
Sbjct: 5   MFILHSNYTPAGDQPEAIARLLSDLEEGATHQTLKGITGSGKTFTMANVIHRLKRPTLIL 64

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK L AQLYSE K+FFP NAVEYFVSYYDY+QPE Y+P +D +I+K+S+IN+ ++R+R
Sbjct: 65  APNKTLTAQLYSEMKHFFPENAVEYFVSYYDYFQPEVYIPGSDRFIQKDSAINDHLERLR 124

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            S T+SL+ER D IVV+SVS IYG+G  ++Y  + + L  G ++ Q+EL+  LV  QY+R
Sbjct: 125 LSTTKSLIERRDVIVVASVSSIYGLGDPDAYRALQMALSPGANLNQRELIRRLVLLQYER 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +  + R TFRV G+ I+IFP+  E  A RV +  + +E +    P+TG+ +  ++   +
Sbjct: 185 TERTLKRATFRVRGEVIDIFPADSEHRAVRVELLDDSVESVQWLDPVTGKTLGKIDHYLV 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
              + + TP   + +A + I  E++ R+ +L ++ RL+EA RL +RIT D+EM+   G C
Sbjct: 245 SPKTLFATPTNKIESASEKILAEMEERVAQLNRDNRLVEANRLYERITNDVEMMRELGYC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +ENYS Y + R+   PP TL +Y+P+D LLFVDESHV +PQIS MYRGD  RK TL +
Sbjct: 305 SGMENYSCYFSDRDSAAPPITLLDYLPKDGLLFVDESHVMVPQISAMYRGDQARKDTLID 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS  +NRPL F E+  ++P TI VSATPG +EL   +G +VEQIIRPTGL+DP V
Sbjct: 365 YGFRLPSSKNNRPLNFGEFEKVKPQTIFVSATPGEYELRVSKGRVVEQIIRPTGLLDPKV 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R A  ++ D+  EI+   ++  R+L+T LTK  AE+LT++L +  IR RYMHS++K  
Sbjct: 425 EVRKADGRMNDLLAEISTCVKRKDRVLVTTLTKVGAEELTDFLTDSGIRARYMHSDIKAE 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EII  LR G+FDVL+G++LLREGLDIPE  LVAILDAD+ GFLRS  +LIQ IGR A
Sbjct: 485 DRVEIINGLRAGEFDVLIGVSLLREGLDIPEASLVAILDADRAGFLRSAQALIQMIGRVA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           RN N K ILYAD +T ++Q AIDET RRRE Q+  N+++ I+P S   K+
Sbjct: 545 RNENGKAILYADAMTPAMQQAIDETNRRRELQIAFNEENGISPTSSVRKL 594


>gi|282859471|ref|ZP_06268576.1| excinuclease ABC, B subunit [Prevotella bivia JCVIHMP010]
 gi|282587699|gb|EFB92899.1| excinuclease ABC, B subunit [Prevotella bivia JCVIHMP010]
          Length = 681

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 323/675 (47%), Positives = 467/675 (69%), Gaps = 23/675 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L +G+   ++ Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELTSKYKPTGDQPEAIKELTEGLKRGDQSQVLLGVTGSGKTFTVANVIANVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPNNAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  SLL  R D I+VSSVSCIYG+G   +  + +V +K G  V++ E L  LV   Y R
Sbjct: 123 SAVSSLLSGRKDVIIVSSVSCIYGMGGPAAMQESVVHIKKGQIVDRNEFLRKLVDILYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++ +++  R++ + ++I+ I E  P+   ++ + +  +I
Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYSDNI-LRITWWDDEIDTIEEVDPIAFHRLASFDAYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L +++   ++ G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTTKEQTEQAIRMIQDDLVLQVDLFKELGESIKAQRIKERVEYDIEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  GE P  L ++ P+D L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRTAGERPYCLLDFFPKDYLVVIDESHVSVPQISAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL+FEE++ L    I VSATP  +EL + +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAALDNRPLKFEEFHNLIHQIIYVSATPADFELRETEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ +EI +  +   R+L+T LTKRMAE+LTEYL + +IR  Y+HS+V +L
Sbjct: 422 DVRPSENQIDDLMNEILIRVECEERVLVTTLTKRMAEELTEYLLDHDIRTAYIHSDVASL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++II DLR G +DVLVG+NLLREGLDIPE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIINDLRAGMYDVLVGVNLLREGLDIPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI+YADTIT+S+Q  IDET RRR KQL++N+ H I P  + + I + + P   E
Sbjct: 542 RNVNGKVIMYADTITESMQKTIDETMRRRTKQLKYNEDHGITPTQIIKAIKDTL-PTNGE 600

Query: 740 DAATTN--------------------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
            A T+                      + D   L ++K++ +  +++    M  AA +L+
Sbjct: 601 SAITSKGATIKNMQPKAYAEPTNTAAFAADPIILRMTKEQLEKSIQNTTALMKQAAKDLD 660

Query: 780 FEEAARIRDEIKRLK 794
           F +AA+ RDEI RL+
Sbjct: 661 FLQAAQYRDEILRLQ 675


>gi|15835489|ref|NP_297248.1| excinuclease ABC subunit B [Chlamydia muridarum Nigg]
 gi|270285670|ref|ZP_06195064.1| excinuclease ABC subunit B [Chlamydia muridarum Nigg]
 gi|270289678|ref|ZP_06195980.1| excinuclease ABC subunit B [Chlamydia muridarum Weiss]
 gi|301337065|ref|ZP_07225267.1| excinuclease ABC subunit B [Chlamydia muridarum MopnTet14]
 gi|14195310|sp|Q9PJF4|UVRB_CHLMU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|7190903|gb|AAF39671.1| excinuclease ABC, subunit B [Chlamydia muridarum Nigg]
          Length = 676

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 330/670 (49%), Positives = 437/670 (65%), Gaps = 19/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q  + P GDQP AI QL +GI      Q+LLG TGSGKTFTMA VI  +  P +V+A
Sbjct: 18  FVLQAPFLPCGDQPEAIRQLSRGILDGIPSQVLLGTTGSGKTFTMANVIANVNVPTLVLA 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 78  HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G    + +L + LV+  Y+  
Sbjct: 138 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALILEVGKEYPRSQLSAQLVRMHYQ-A 196

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R  FR  G  I+IF ++  D+A R+    + +  I    PLT      V ++ +Y
Sbjct: 197 SASPQRSAFRERGSVIDIFLAYESDLAVRLEFVNDTLVSIEYTDPLTMIPSHTVPSVTLY 256

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ RL+    EGR +E +RL QR T+D+EM++  G C+
Sbjct: 257 PGSHYVTPEAVREQAIRTIREELEQRLLFF--EGRPVEQERLFQRTTHDIEMIKEIGFCK 314

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PGEPP  L +Y PED LL +DESH T+PQ+  MYRGD  RK +L EY
Sbjct: 315 GIENYSRHFTGAAPGEPPTCLLDYFPEDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 374

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        + VSATPG  E+++ +G I+EQIIRPTG+ DP  E
Sbjct: 375 GFRLPSAFDNRPLTYEEARRYFRRVVYVSATPGELEVQESRGHIIEQIIRPTGIPDPLPE 434

Query: 561 IRSARTQVEDVYDEINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           IR A  Q++D+ +EI    +Q LR     IL+  +TK++AED+  +L E  I   Y+HS 
Sbjct: 435 IRPATGQIDDLLEEI----RQRLRKDQEKILVVSVTKKLAEDIAAFLAELGIAAAYLHSG 490

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           ++T ER +I+ DLRLG  DVL+G+NLLREG+D+PE  LVAILDADKEGFLRS  SLIQ  
Sbjct: 491 IETAERTQILTDLRLGTIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFC 550

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+ KVI YAD IT S+   + ET RRR+ QL++NKKHNI P+        +I P
Sbjct: 551 GRAARNVHGKVIFYADRITPSMDHMLKETERRRQIQLDYNKKHNITPKP-------IIKP 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           IL           D++  + S +  ++ +K   + M+ AA +  F+EAA+ RD +   K 
Sbjct: 604 ILANPITKEGAQEDSRPETQSTEDLESSIKQYEEAMYKAAQDFQFDEAAKYRDLMNAAKR 663

Query: 796 SPYFQGLDDS 805
              F+  +D 
Sbjct: 664 QLLFKQGEDG 673


>gi|313158966|gb|EFR58343.1| excinuclease ABC, B subunit [Alistipes sp. HGB5]
          Length = 691

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 321/669 (47%), Positives = 442/669 (66%), Gaps = 15/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AI QL+  I    K   LLGVTGSGKTFT+A V+  + RP +V++
Sbjct: 3   FKLVSDYAPMGDQPEAIEQLVGSIRHGSKHNTLLGVTGSGKTFTVANVVAQLNRPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+NFFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+ SIN +I+++R 
Sbjct: 63  HNKTLAAQLYGEFRNFFPENAVEYFVSYYDYYQPEAYLPSTDTYIEKDLSINAEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
               +LL  R D IVVSSVSC+YG G+   +    + +K+G  V  K  L  LV+  Y R
Sbjct: 123 RTVATLLSGRRDVIVVSSVSCLYGAGNPADFHATAIDIKVGQIVSYKHFLYKLVEALYTR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLE--DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            +  +   TFRV GD+++I  +  E     +RV  + N+IE I    P+TGQ+I +++ +
Sbjct: 183 TERELEPATFRVNGDTVDIMAAFGEFGSQCFRVMFYDNEIEAIQTIDPVTGQRIHSLDNL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  S +VT +  +N A++ I  +L  ++   E+ GR +EAQR++QR+ YD+EM++  G
Sbjct: 243 TLYPTSLFVTTKERINGAVQQIYLDLGRQIEFFERAGRPMEAQRIKQRVEYDIEMIKELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR+ G  P  L +Y P+D LL VDESHVTIPQ+  M+ GD  RK  L
Sbjct: 303 YCPGIENYSRYFDGRSEGTRPFCLIDYFPKDYLLVVDESHVTIPQVHAMFGGDRARKENL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP+  DNRP+ F E+  L+ T+I VSATP  +EL + +G+IVEQ+IRPTGLVDP
Sbjct: 363 VEYGFRLPAAKDNRPVTFAEFEQLQGTSIYVSATPADYELMKSEGVIVEQLIRPTGLVDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+E+R    Q++D+ +EI+   +   ++L+T +TKRMAE+L++Y     +R RY+HS+V 
Sbjct: 423 PLEVRVTMNQIDDLLEEIDKRVKNDDKVLVTTITKRMAEELSKYFDRVGVRNRYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERI+I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL Q  GR
Sbjct: 483 TLERIQILEDLRAGMFDVLVGVNLLREGLDLPEVALVAILDADKEGFLRNVRSLTQIAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK-----EKIMEV 732
           AAR+    VILYADT T S++ AI+++ RRREKQ+ +N +H + P+  +     +  +  
Sbjct: 543 AARHSQGNVILYADTCTDSMRYAIEQSNRRREKQVRYNMEHGMLPRRAQRSGSGQSTLLT 602

Query: 733 IDPILLEDAATTNI-------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
               + E AA   I       + D Q+   + +   A +   R+ M  AA +L+F  AA+
Sbjct: 603 TRTDVPEIAAVYPIAEDHYMAAADVQKTYAASENLDALIVKAREDMERAAKSLDFLAAAK 662

Query: 786 IRDEIKRLK 794
            RD +  L+
Sbjct: 663 FRDRMYELQ 671


>gi|15639110|ref|NP_218556.1| excinuclease ABC subunit B [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025350|ref|YP_001933122.1| excinuclease ABC subunit B [Treponema pallidum subsp. pallidum
           SS14]
 gi|6136157|sp|O83154|UVRB_TREPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238689314|sp|B2S264|UVRB_TREPS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|3322379|gb|AAC65106.1| excinuclease ABC, subunit B (uvrB) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189017925|gb|ACD70543.1| excinuclease ABC, subunit B [Treponema pallidum subsp. pallidum
           SS14]
          Length = 668

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 317/661 (47%), Positives = 445/661 (67%), Gaps = 11/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQ AAI  L++G+H+  + Q L GVTGSGKTFT+A VI  +Q+P +V++
Sbjct: 4   FKLHASFQPAGDQIAAIDALVRGLHAGARFQTLKGVTGSGKTFTVANVIARVQKPTLVIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L+AQLY EFK FFP NAVEYFVSYYDYYQPE+YVP  D YIEK++SIN +I+RMR 
Sbjct: 64  HNKTLSAQLYREFKGFFPDNAVEYFVSYYDYYQPESYVPARDLYIEKDASINAEINRMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ER D IVV++VSCIYG+G  ES+  + + +++   ++ ++L   LV  QY+R 
Sbjct: 124 SATFSLMERRDVIVVATVSCIYGLGLPESWRDLRIHVEVNQCLDLEDLKRQLVSLQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  +  G FRV GD IEIFP++LE+  +R+    + +  I   +P++G  +R  E + +Y
Sbjct: 184 DAVLECGRFRVRGDVIEIFPAYLEEF-YRIECDWDRVVRIRRIHPVSGAVLREFEELTVY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V     +  AM  I++EL  RL++L +E +L EA RL+ R  YDLEML   G C 
Sbjct: 243 PAKHFVLKEDAIPRAMDRIRQELDERLVQLTQENKLAEAARLKTRTEYDLEMLGEMGYCH 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  + GR  GEPP TL  Y P+D +LFVDESHVT+PQ+  MY GD  RK  L ++
Sbjct: 303 GIENYSAPIAGRKSGEPPVTLLHYFPKDFVLFVDESHVTLPQLGAMYEGDRVRKQNLIDF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP   DNRPL+  E+  L    + +SATPG  E  Q    IVEQ+IRPTGL+DP +E
Sbjct: 363 GFRLPCARDNRPLKDSEFEALLNQAVFISATPGVKERTQSVQ-IVEQLIRPTGLLDPCIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q+ED+   +   + +  R L+  LTK+MAEDLT+Y     IR +Y+HSE++T+E
Sbjct: 422 VRKTDGQIEDICQRVKACSARNERSLVLTLTKKMAEDLTDYFNGLGIRTKYVHSEIETIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+  LR G+ +VLVGINLLREG+D+PE   +AILDA+  GFLRS TSLIQ IGRAAR
Sbjct: 482 RVEILTSLRAGECEVLVGINLLREGIDLPEVAFIAILDANIVGFLRSTTSLIQIIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--DPILL 738
           N    V++YAD I+ +++ AI+ET RRR+ Q+ +N+ H I P+++K+ I +++  +  + 
Sbjct: 542 NARGTVVMYADAISDAMREAIEETARRRKIQMAYNRAHGITPRTIKKSIEDILVREQEVK 601

Query: 739 EDAATTNI-----SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +DAA   +     + DA   + + +  K  +++LR  M + A  L FEEAA IRD+I +L
Sbjct: 602 KDAARVQVAPLLRAADADVRTHAAR--KKMVQALRLHMKVCARELRFEEAALIRDKILQL 659

Query: 794 K 794
           +
Sbjct: 660 Q 660


>gi|189466026|ref|ZP_03014811.1| hypothetical protein BACINT_02390 [Bacteroides intestinalis DSM
           17393]
 gi|189434290|gb|EDV03275.1| hypothetical protein BACINT_02390 [Bacteroides intestinalis DSM
           17393]
          Length = 682

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 328/673 (48%), Positives = 468/673 (69%), Gaps = 20/673 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIA+L +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 4   FELTSAYKPTGDQPEAIAELTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 64  HNKTLAAQLYSEFKAFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 123

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT SLL  R D +VVSSVSCIYG+G+   + + +++++ G +  +   L  LV   Y R
Sbjct: 124 AATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYENVIEVQQGKAFSRNVFLRRLVDSLYVR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  R+  +G++I+ I E  P++G  I   +T KI
Sbjct: 184 NDIDLNRGNFRVKGDTVDIYLAYADNL-LRIIFWGDEIDSIEEVDPISGVTIARFDTYKI 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E EGR  EA+RL++R+TYD+EM+   G C
Sbjct: 243 YPANLFMTSKEATLRAIHEIEDDLHKQVQWFESEGRPFEAKRLQERVTYDMEMIRELGHC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR+ G  P  L ++ PED L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 303 SGIENYSRYFDGRSAGSRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 362

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +G++VEQ+IRPTGL+DP +
Sbjct: 363 YGFRLPAAMDNRPLKFEEFEEMAKQVIYVSATPADYELIQSEGVVVEQVIRPTGLLDPII 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LTE+L   N++  Y+HS+V TL
Sbjct: 423 EVRPSHNQIDDLMEEIQIRIEKNERTLVTTLTKRMAEELTEFLLNNNVKCNYIHSDVDTL 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 483 ERVKIMSDLREGLYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDP--- 735
           RNVN  VI+YAD IT+S+QL IDET RRREKQL++N+++ I PQ +K+ K + V  P   
Sbjct: 543 RNVNGMVIMYADRITESMQLTIDETNRRREKQLKYNEEYGITPQQIKKAKNLNVFAPNTA 602

Query: 736 --------------ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
                           +E  ++ +I+ D     +S+ + +  ++  RK M  AA  L+F 
Sbjct: 603 LENGFTEKGTTTPRPYVEQESSASIAADPIVQYMSRPQLEKSIERTRKLMQEAAKKLDFI 662

Query: 782 EAARIRDEIKRLK 794
           EAA+ RDE+ +++
Sbjct: 663 EAAQYRDELLKME 675


>gi|187922139|ref|YP_001893781.1| excinuclease ABC subunit B [Burkholderia phytofirmans PsJN]
 gi|187713333|gb|ACD14557.1| excinuclease ABC, B subunit [Burkholderia phytofirmans PsJN]
          Length = 659

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 307/596 (51%), Positives = 419/596 (70%), Gaps = 1/596 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AIA+L++GI    K Q L G+TGSGKTFTMA VI  + RP +++A
Sbjct: 6   FILHSAYTPAGDQPEAIARLIEGIEEGAKHQTLKGITGSGKTFTMANVIHRLNRPTLMLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK L AQLY E K FFP NAVE+FVSYYD++QPE Y+P +D +I+K+S+IN+ ++R+R 
Sbjct: 66  PNKTLTAQLYEEMKQFFPENAVEFFVSYYDFFQPEVYMPGSDRFIQKDSAINDHLERLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+SL+ER D IVV+SVS IYG+G    Y ++ + L  G S   +EL+  LV+ QY+R 
Sbjct: 126 STTKSLIERRDVIVVASVSSIYGLGDPNGYRELQIALSRGISFRPRELIRRLVRLQYERV 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RGTFRV GD+++IFP+  E  A RV +  + ++ +    P TG ++  ++   + 
Sbjct: 186 ERTLKRGTFRVRGDAVDIFPADSEYRAVRVELLDDSVQSVHWIDPATGAQLGEIDHYLVS 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + + TPR  +N+A   I  E++ R+ EL  E RL+EA RL +RIT D+EM+   G C 
Sbjct: 246 PKTLFATPRNRVNSATIKILAEMEARVAELNSENRLVEADRLYERITGDVEMMRELGYCP 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS YL GR+P  PP TL +Y+P D LLFVDESHV +PQIS MY+GD  RK TL +Y
Sbjct: 306 GMENYSCYLNGRDPALPPNTLLDYLPTDGLLFVDESHVMVPQISAMYKGDQSRKDTLIDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPL FEE+  ++P TI VSATPG++EL   +G  V QIIRPTGL+DP VE
Sbjct: 366 GFRLPSSKNNRPLSFEEFEKVKPQTIFVSATPGNYELAISKGRFVSQIIRPTGLLDPEVE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R+    ++D+  EI    +   R+L+T LTKR AE+L +++ ER IR RY+H+++KT +
Sbjct: 426 VRTTDGCIDDLLVEIKKCVKNKNRVLVTTLTKRAAEELNDFMTERGIRSRYLHADIKTED 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII  LR G+FDVL+GI+LLREGLDIPE  LVAILDAD  GFLRS  +LIQ IGR AR
Sbjct: 486 RIEIINGLREGEFDVLIGISLLREGLDIPEAALVAILDADHAGFLRSAQALIQMIGRVAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP-QSVKEKIMEVIDP 735
           N   + ILYAD IT +++ A+DET  RR+KQ+E N+++ I P  SV++   E ++P
Sbjct: 546 NEEGRAILYADGITPAMKQAMDETGSRRKKQIEFNEENGIVPASSVRKLASEHVEP 601


>gi|253568620|ref|ZP_04846031.1| excinuclease ABC subunit B [Bacteroides sp. 1_1_6]
 gi|251842693|gb|EES70773.1| excinuclease ABC subunit B [Bacteroides sp. 1_1_6]
          Length = 677

 Score =  625 bits (1613), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 335/668 (50%), Positives = 461/668 (69%), Gaps = 15/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT SLL  R D +VVSSVSCIYG+G+   + + +++++ G  +++   L  LV   Y R
Sbjct: 123 AATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMLDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++IF ++  D   RV+ +G++I+ I E  P+TG      E  KI
Sbjct: 183 NDIDLNRGNFRVKGDTVDIFLAY-SDTLLRVTFWGDEIDGIEEVDPITGVTTAPFEAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D LL +DESHV++PQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLLVIDESHVSVPQVRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEEMTKQVIYVSATPAEYELIQSEGIVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+L EYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI----- 733
           RNVN KVI+YAD IT S++L IDET RRREKQL +N+ + I PQ +K+ + + V      
Sbjct: 542 RNVNGKVIMYADKITDSMRLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGSPSS 601

Query: 734 --DPILLEDAA-----TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
             D +L E  A     + NI+ D     +SK + +  ++  RK M  AA  L F EAA+ 
Sbjct: 602 EADELLKEKHAYVEPSSPNIAADPIVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQY 661

Query: 787 RDEIKRLK 794
           R+E+ +L+
Sbjct: 662 RNELLKLE 669


>gi|256045133|ref|ZP_05448033.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1]
 gi|265991568|ref|ZP_06104125.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1]
 gi|263002352|gb|EEZ14927.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1]
          Length = 547

 Score =  625 bits (1612), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 294/415 (70%), Positives = 347/415 (83%)

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
           NSHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  
Sbjct: 1   NSHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAG 60

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYG
Sbjct: 61  IENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYG 120

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEI
Sbjct: 121 FRLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEI 180

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLER
Sbjct: 181 RPAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLER 240

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           IEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARN
Sbjct: 241 IEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARN 300

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           V+ KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D 
Sbjct: 301 VDGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDH 360

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +
Sbjct: 361 VRADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRET 415


>gi|255691528|ref|ZP_05415203.1| excinuclease ABC subunit B [Bacteroides finegoldii DSM 17565]
 gi|260622919|gb|EEX45790.1| excinuclease ABC subunit B [Bacteroides finegoldii DSM 17565]
          Length = 677

 Score =  625 bits (1612), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 333/669 (49%), Positives = 466/669 (69%), Gaps = 15/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYGEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   + + +++++ G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMIDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV+ +G++I+ I E  P++G  +   E  KI
Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPVSGVTVAPFEAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFQEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+LTEYL   NIR  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELTEYLLNNNIRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGIYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI----- 733
           RNVN KVI+YAD IT S++L IDET RRREKQL +N+ + I PQ +K+ + ++V      
Sbjct: 542 RNVNGKVIMYADKITDSMRLTIDETNRRREKQLAYNEANGITPQQIKKARNLDVFGNANS 601

Query: 734 --DPILLEDAA-----TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
             + +L E  A     T NI+ D     +SK + +  ++  RK M  AA  L F EAA+ 
Sbjct: 602 ETNELLKEKQAYIEPTTPNIAADPVVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQY 661

Query: 787 RDEIKRLKS 795
           RDE+ +L++
Sbjct: 662 RDELLKLEN 670


>gi|260592314|ref|ZP_05857772.1| excinuclease ABC subunit B [Prevotella veroralis F0319]
 gi|260535764|gb|EEX18381.1| excinuclease ABC subunit B [Prevotella veroralis F0319]
          Length = 680

 Score =  625 bits (1612), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 318/673 (47%), Positives = 465/673 (69%), Gaps = 20/673 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L +G+   +K Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FKLTSKYKPTGDQPEAIKELTEGLERGDKSQVLLGVTGSGKTFTVANVIANVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TD YIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKAFFPENAVEYYVSYYDYYQPEAYLPTTDVYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  SLL  R D IVVSSVSCIYG+G+  +  + ++Q+K G  +++ E L  LV   Y R
Sbjct: 123 SAVSSLLSGRKDVIVVSSVSCIYGMGAPVAMKENVIQIKKGQIIDRNEFLRRLVDSLYTR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++ +++  R++ + ++I+ I E  P+   +I   +  ++
Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYNDNI-LRITWWDDEIDTIEEVDPIAFHRIATFDDYEL 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I++++  ++    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTEGAIRQIQDDMVKQVDFFTQLGDNIKAQRIKERVEYDIEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G+ P  L ++ P+D L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRKAGQRPYCLLDFFPKDYLMVIDESHVSVPQISAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPL+FEE++ L    I VSATP  +EL++ +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLKFEEFHNLIHQIIYVSATPADYELKESEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI + A++  R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V +L
Sbjct: 422 EVRPSENQIDDLMNEIVIRAEKEERVLVTTLTKRMAEELTEYLLNHDIRTAYIHSDVASL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++II DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 DRVKIINDLRAGLYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RNVN KVI+YAD IT+S+Q  IDET RRR KQL++N++H+I P+ + + I + +      
Sbjct: 542 RNVNGKVIMYADNITESMQRTIDETMRRRVKQLKYNEEHHITPKQIVKAIKDTLPKTGRS 601

Query: 734 ------------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
                         I  E   +   + D   + ++K++ +  + +    M  AA +L+F 
Sbjct: 602 TTAQAFPFAKGAKGIYTEPTQSMAFAADPIVMRMTKEQLEKSIANTTALMKQAAKDLDFL 661

Query: 782 EAARIRDEIKRLK 794
           +AA+ RDEI RL+
Sbjct: 662 QAAQYRDEIIRLQ 674


>gi|330996268|ref|ZP_08320153.1| excinuclease ABC, B subunit [Paraprevotella xylaniphila YIT 11841]
 gi|329573460|gb|EGG55067.1| excinuclease ABC, B subunit [Paraprevotella xylaniphila YIT 11841]
          Length = 673

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 327/665 (49%), Positives = 466/665 (70%), Gaps = 12/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++  DY P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI+ + +P ++++
Sbjct: 4   FELTADYSPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIQNINKPTLILS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 64  HNKTLAAQLYGEFKSFFPHNAVEYYVSYYDYYQPEAYIPSTDTYIEKDLAINDEIDKLRL 123

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+  ++   +++LK G  +++   L  LV   Y R
Sbjct: 124 AATSALLSGRKDVVVVSSVSCIYGMGNPAAFYDNVIELKRGKLLDRNVFLRRLVDSLYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ + RG FRV GD+++I+ ++  D   RV+ + ++I+ I E  P++  ++ + +  +I
Sbjct: 184 NDLNLERGCFRVKGDTVDIYLAY-SDNLLRVTFWDDEIDAIEEVDPVSCLRLGSFDEYRI 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T + +   A+  I+++L  ++   E+ G+  EA+RL +R+TYD+EM+   G C
Sbjct: 243 YPANLFMTTKESTAKAIHQIEDDLHKQVSYFEETGKPYEAKRLYERVTYDMEMIRELGHC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ PED L+ +DESHV++PQI+ MY GD  RK  L E
Sbjct: 303 SGIENYSRYFDGREAGTRPYCLLDFFPEDFLIVIDESHVSVPQINAMYGGDRARKKNLVE 362

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L    I VSATP  +EL+Q +GI+VEQ+IRPTGL+DP +
Sbjct: 363 YGFRLPAAMDNRPLKFEEFQQLAKQVIYVSATPADYELQQSEGIVVEQVIRPTGLLDPVI 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  QV+D+ +EI    ++  RIL+T LTKRMAE+LT+Y  + +IR  ++HS+V TL
Sbjct: 423 EVRPSLNQVDDLMEEIQQRIEKDERILVTTLTKRMAEELTDYFMKHDIRTNFIHSDVDTL 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 483 ERVQIMDDLRAGRFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE--KIMEVI---- 733
           RNV+ K I+YAD IT S++  IDET RRREKQL++N++H I PQ +K+  K+ ++I    
Sbjct: 543 RNVHGKAIMYADRITDSMRKTIDETNRRREKQLKYNEEHGITPQQIKKGRKMTDLISANA 602

Query: 734 ----DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
               +P    +        D     +++ + +  ++  RK M  AA  L+F EAA+ RDE
Sbjct: 603 EAHAEPRAYIEPEEKMAVADPIMEYMTRDQLEKSIERSRKLMQEAAKKLDFIEAAQYRDE 662

Query: 790 IKRLK 794
           + R++
Sbjct: 663 MLRME 667


>gi|160885710|ref|ZP_02066713.1| hypothetical protein BACOVA_03714 [Bacteroides ovatus ATCC 8483]
 gi|156108523|gb|EDO10268.1| hypothetical protein BACOVA_03714 [Bacteroides ovatus ATCC 8483]
          Length = 676

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 332/667 (49%), Positives = 465/667 (69%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   YELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT +LL  R D +VVSSVSCIYG+G+   + + +++++ G  +++   L  LV   Y R
Sbjct: 123 SATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMIDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV+ +G++I+ I E  P+TG  I   +  KI
Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPITGVTIAPFDAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFQEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+L EYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCTYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI----- 733
           RNVN KVI+YAD +T S++L IDET RRREKQL +N+ + I PQ +K+ + + V      
Sbjct: 542 RNVNGKVIMYADKMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNAKE 601

Query: 734 -DPILLE-----DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
            D +L E     + +T NI+ D     +SK + +  ++  RK M  AA  L F EAA+ R
Sbjct: 602 ADELLKERHAYVEPSTPNIAADPIVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQYR 661

Query: 788 DEIKRLK 794
           DE+ +L+
Sbjct: 662 DELLKLE 668


>gi|153806678|ref|ZP_01959346.1| hypothetical protein BACCAC_00948 [Bacteroides caccae ATCC 43185]
 gi|149131355|gb|EDM22561.1| hypothetical protein BACCAC_00948 [Bacteroides caccae ATCC 43185]
          Length = 677

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 334/668 (50%), Positives = 464/668 (69%), Gaps = 15/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIAQL  G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELTSAYKPTGDQPEAIAQLTDGVIQGLPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   + + +++++ G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMLDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV+ +G++I+ I E  P+TG  I   E  KI
Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPVTGVTIAPFEAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFAEMAKQVIYVSATPAEYELIQSEGIVVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+LTEYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKSERVLVTTLTKRMAEELTEYLLNNNVRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGIYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI----- 733
           RNVN KVI+YAD +T S++L IDET RRREKQL +N+ + I PQ +K+ + + V      
Sbjct: 542 RNVNGKVIMYADRMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNANS 601

Query: 734 --DPILLEDAA-----TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
             + +L E  A     T NI+ D     +SK + +  ++  RK M  AA  L F EAA+ 
Sbjct: 602 ETEELLKEKHAYVEPSTPNIAADPVVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQY 661

Query: 787 RDEIKRLK 794
           RDE+ +L+
Sbjct: 662 RDELLKLE 669


>gi|224539631|ref|ZP_03680170.1| hypothetical protein BACCELL_04539 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518722|gb|EEF87827.1| hypothetical protein BACCELL_04539 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 683

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 326/674 (48%), Positives = 463/674 (68%), Gaps = 21/674 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIA+L +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 4   FELTSAYKPTGDQPEAIAELTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 64  HNKTLAAQLYSEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 123

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT SLL  R D +VVSSVSCIYG+G+   +   +++++ G +  +   L  LV   Y R
Sbjct: 124 AATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEVQQGKAFSRNVFLRRLVDSLYVR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  R+  +G+D++ I E  P++G  I   +  KI
Sbjct: 184 NDIDLNRGNFRVKGDTVDIYLAYADNL-LRIIFWGDDVDSIEEVDPISGVTIARFDAYKI 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E EGR  EA+RL++R+TYD+EM+   G C
Sbjct: 243 YPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAKRLQERVTYDMEMIRELGHC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ PED L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 303 SGIENYSRYFDGRKAGSRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 362

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 363 YGFRLPAAMDNRPLKFEEFAEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPII 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LTE+L   +++  Y+HS+V TL
Sbjct: 423 EVRPSHNQIDDLMEEIQIRIEKNERTLVTTLTKRMAEELTEFLLNNDVKCNYIHSDVDTL 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 483 ERVKIMSDLREGIYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK------------- 726
           RNVN  VI+YAD IT S++L IDET RRREKQL++N++H I PQ +K             
Sbjct: 543 RNVNGMVIMYADRITDSMRLTIDETNRRREKQLKYNEEHGITPQQIKKGKNLNVFASNAP 602

Query: 727 ------EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
                 EK   +     +E  ++ +I+ D     +S+ + +  ++  RK M  AA  L+F
Sbjct: 603 TEDSYIEKGATITPRPYIEQESSAHIAADPIVQYMSRPQLEKSIERTRKLMQEAAKKLDF 662

Query: 781 EEAARIRDEIKRLK 794
            EAA+ RDE+ +++
Sbjct: 663 IEAAQYRDELLKME 676


>gi|333030109|ref|ZP_08458170.1| UvrABC system protein B [Bacteroides coprosuis DSM 18011]
 gi|332740706|gb|EGJ71188.1| UvrABC system protein B [Bacteroides coprosuis DSM 18011]
          Length = 670

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 329/662 (49%), Positives = 460/662 (69%), Gaps = 9/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI +L +G+ S    Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELTSDYKPTGDQPEAIKELTEGVLSDVPGQTLLGVTGSGKTFTVANVIANVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT SLL  R D +VVSSVSCIYG+G+   +   ++ ++ G  V +   L  LV   Y R
Sbjct: 123 AATSSLLSGRKDVVVVSSVSCIYGMGNPADFYNNVIDIEQGKVVNRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ + +  RV  + ++++ I E  P++G  I + E+ KI
Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAYTDHI-LRVVFWDDEVDSIEEVDPISGATIADYESYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T + +  +A+  I+E+L  ++   E+ G+  EA+RL +R+TYD+EML   G C
Sbjct: 242 YPANLFMTTKESTLSAIHQIEEDLTKQVTYFEEIGKPYEAKRLYERVTYDMEMLRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PG  P  L ++ PED L+ +DESHV+IPQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGREPGTRPYCLLDFFPEDFLIVIDESHVSIPQIRAMYGGDKARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL +  G+IVEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEEMAKQVIYVSATPADYELMKSDGVIVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+LTEYL    ++  Y+HS+V TL
Sbjct: 422 DVRPSMNQIDDLMEEIQLRVERQERVLVTTLTKRMAEELTEYLLNHGVKCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILL 738
           RN++  VI+YAD +T S+Q  IDET RRREKQL +N+ HNI PQ +K+ + + V      
Sbjct: 542 RNIHGMVIMYADKMTDSMQKTIDETNRRREKQLAYNEAHNITPQQIKKARNLAVFGEYHD 601

Query: 739 EDAAT------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           E           NI+ D     +S+ +    ++  RK M  AA +L+F +AA+ RDE+ +
Sbjct: 602 ESGKAYIEPEMPNIAADPVVQYMSRDELAKSIERTRKLMKKAAKDLDFIQAAQYRDELFK 661

Query: 793 LK 794
           L+
Sbjct: 662 LE 663


>gi|300727772|ref|ZP_07061155.1| excinuclease ABC, B subunit [Prevotella bryantii B14]
 gi|299774967|gb|EFI71576.1| excinuclease ABC, B subunit [Prevotella bryantii B14]
          Length = 679

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 324/672 (48%), Positives = 464/672 (69%), Gaps = 19/672 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI QL++GI      Q+LLGVTGSGKTFTMA VI  + +P ++++
Sbjct: 3   FNLTSNYKPTGDQPQAIKQLVEGIEQGVPAQVLLGVTGSGKTFTMANVIAKVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +INE ID++R 
Sbjct: 63  HNKTLAAQLYQEMKGFFPNNAVEYYVSYYDYYQPEAYLPTSDTYIEKDLAINEDIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            A  +LL  R D IVVSSVSCIYG+G   +  + I++LK G  +++ E L  LV   Y R
Sbjct: 123 GAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQESIIKLKKGQIIDRNEFLRKLVDDLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV G++++I  ++ +++  RVS + ++I+ I E   ++  +I + E  +I
Sbjct: 183 NDIELHRGNFRVKGETVDIAMAYSDNI-LRVSWWDDEIDSIEEVDSVSFHRIESFEQYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +      ++ I+++L  ++    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFITTKEQTEHGIRMIQDDLVKQVDYFNEIGDHIKAQRIKERVEYDIEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G+ P  L ++ P+D LL VDESHV+IPQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRQAGDRPYCLLDFFPKDYLLIVDESHVSIPQIGAMYGGDRARKQNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPL+FEE++ L    I VSATP ++ELE+ +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLKFEEFHELLNQAIYVSATPANYELEESEGIVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ DEI     +  R+L+T LTKRMAE+LTEYL   N++  Y+HS+V TL
Sbjct: 422 EVRPSENQIDDLMDEILTRIHRNERVLITTLTKRMAEELTEYLLNHNVKSAYIHSDVATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +RI+I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRIKIMNDLRAGTYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++ KVI+YAD IT+S+Q  IDET RRR  Q+++N++H I PQ + ++I   +  +  E
Sbjct: 542 RNIHGKVIMYADNITESMQKTIDETARRRMIQMKYNEEHGITPQQIVKEIKNELASVSNE 601

Query: 740 D--AATTNI---------------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
           +  A T N+               + D   L+++K++ +  + +  + M +AA +L+F +
Sbjct: 602 NEPARTRNMDKTNNVYHESEVGTFAADPIVLNMTKEQLEKSIANTTRLMKMAAKDLDFMQ 661

Query: 783 AARIRDEIKRLK 794
           AA+ RDEI +L+
Sbjct: 662 AAQYRDEIVKLQ 673


>gi|269104260|ref|ZP_06156956.1| excinuclease ABC subunit B [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268160900|gb|EEZ39397.1| excinuclease ABC subunit B [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 650

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 296/591 (50%), Positives = 416/591 (70%), Gaps = 1/591 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +DY PSGDQ  AIA+L+ G+ S    Q+L G+TGSGKTFTMA VI  ++RP +++A
Sbjct: 6   FILHSDYSPSGDQVEAIAKLVDGVESGASHQVLQGITGSGKTFTMANVIHRLKRPTLILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K FFP N VEYFVSYYD+YQPE Y+P +D +I K+S+INEQ++R+R 
Sbjct: 66  HNKTLAAQLYSEMKRFFPENHVEYFVSYYDFYQPEVYIPASDRFIRKDSAINEQLERLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T++L+E+ D IVV+SVS IYG+G  E Y    + L IG  + + + +  L   QY+R 
Sbjct: 126 STTKALIEQRDVIVVASVSAIYGLGEPELYRAAQIPLYIGRKINRSQFIEQLTSLQYQRT 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + R TFR  GD ++IFP+  E VA RV M  ++IE++    P +G+ +  +E  ++ 
Sbjct: 186 EKRLERATFRSHGDIVDIFPAESEKVAIRVEMLDDEIEQLYWLDPFSGKTLGALERYRVS 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y   +  +  A   I+++L+ R+ +L +E R+ EA RL +R  YD+EM++  G C 
Sbjct: 246 PKTLYAASKDKITKASLLIQKDLEQRVAQLNQENRITEAARLYERTMYDIEMMQQLGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS YL  R+P  PP TL +Y+P+D LLF+DESHV IPQIS M++GD  RK TL EY
Sbjct: 306 GLENYSCYLNDRDPTLPPTTLLDYLPKDGLLFIDESHVMIPQISAMFKGDQSRKETLIEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPL F E+  ++P T+ VSATPG++EL + +  +VEQIIRPTGL+DP +E
Sbjct: 366 GFRLPSAKNNRPLDFNEFEKIKPQTLFVSATPGNYELSKAKTPVVEQIIRPTGLLDPTIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +RS+  Q+ ++ DEI +  ++G R L+  LTK+ AE L EY+ E++ +V Y+HS+VKT +
Sbjct: 426 VRSSSNQISNLLDEIKIRIEKGERTLVNTLTKKSAESLYEYMQEQSFKVSYLHSDVKTED 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ II  LR G+ D+L+GINLLREGLDIPE  LVAILDAD  GFLRSK +LIQ IGRAAR
Sbjct: 486 RVRIIEQLRAGELDILIGINLLREGLDIPEASLVAILDADHAGFLRSKAALIQIIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP-QSVKEKIM 730
           N N   ILY + +T ++Q AIDE+  RR +Q+++N  H INP  S++++++
Sbjct: 546 NKNGMAILYGNKVTPAMQQAIDESLDRRSRQIQYNHLHQINPITSIRQELV 596


>gi|260174430|ref|ZP_05760842.1| excinuclease ABC subunit B [Bacteroides sp. D2]
 gi|293370229|ref|ZP_06616789.1| excinuclease ABC, B subunit [Bacteroides ovatus SD CMC 3f]
 gi|299146196|ref|ZP_07039264.1| excinuclease ABC subunit B [Bacteroides sp. 3_1_23]
 gi|315922697|ref|ZP_07918937.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|292634726|gb|EFF53255.1| excinuclease ABC, B subunit [Bacteroides ovatus SD CMC 3f]
 gi|298516687|gb|EFI40568.1| excinuclease ABC subunit B [Bacteroides sp. 3_1_23]
 gi|313696572|gb|EFS33407.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 676

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 332/667 (49%), Positives = 465/667 (69%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   YELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT +LL  R D +VVSSVSCIYG+G+   + + +++++ G  +++   L  LV   Y R
Sbjct: 123 SATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMMDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV+ +G++I+ I E  P+TG  I   +  KI
Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPITGVTIAPFDAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFQEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+L EYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCTYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI----- 733
           RNVN KVI+YAD +T S++L IDET RRREKQL +N+ + I PQ +K+ + + V      
Sbjct: 542 RNVNGKVIMYADKMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNAKE 601

Query: 734 -DPILLE-----DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
            D +L E     + +T NI+ D     +SK + +  ++  RK M  AA  L F EAA+ R
Sbjct: 602 ADELLKERHAYVEPSTPNIAADPIVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQYR 661

Query: 788 DEIKRLK 794
           DE+ +L+
Sbjct: 662 DELLKLE 668


>gi|60682121|ref|YP_212265.1| excinuclease ABC subunit B [Bacteroides fragilis NCTC 9343]
 gi|253567095|ref|ZP_04844546.1| excinuclease ABC subunit B [Bacteroides sp. 3_2_5]
 gi|265764258|ref|ZP_06092826.1| excinuclease ABC, B subunit [Bacteroides sp. 2_1_16]
 gi|81314815|sp|Q5LC24|UVRB_BACFN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|60493555|emb|CAH08342.1| UvrABC SOS-repair system protein B [Bacteroides fragilis NCTC 9343]
 gi|251944219|gb|EES84728.1| excinuclease ABC subunit B [Bacteroides sp. 3_2_5]
 gi|263256866|gb|EEZ28212.1| excinuclease ABC, B subunit [Bacteroides sp. 2_1_16]
 gi|301163591|emb|CBW23142.1| UvrABC SOS-repair system protein B [Bacteroides fragilis 638R]
          Length = 677

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 331/667 (49%), Positives = 461/667 (69%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELTSAYKPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   +   +++++ G ++ +   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIERGRTINRNVFLRRLVDSLYMR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++  D   RV+ +G++I+ I E  P++G  I   E  KI
Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAY-SDNLLRVTFWGDEIDGIEEVDPVSGVTIAPFEAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAYFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELVQSEGIVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +  ++  R+L+T LTKRMAE+LTEYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQIRIEKEERVLVTTLTKRMAEELTEYLLNNNVRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI-DPIL 737
           RNVN  VI+YAD IT S++L IDET RRREKQL +N++H I PQ +K+ + + V  +   
Sbjct: 542 RNVNGMVIMYADKITDSMRLTIDETNRRREKQLAYNEEHGITPQQIKKARNLSVFGNGAE 601

Query: 738 LEDA----------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
            ED           ++ NI+ D     +SK + +  ++  RK M  AA  L F EAA+ R
Sbjct: 602 TEDTQKGTRAYVEPSSPNIAADPVVQYMSKAQLEKSMERTRKLMQEAAKKLEFIEAAQYR 661

Query: 788 DEIKRLK 794
           DE+ +++
Sbjct: 662 DELLKME 668


>gi|53713912|ref|YP_099904.1| excinuclease ABC subunit B [Bacteroides fragilis YCH46]
 gi|81824991|sp|Q64T09|UVRB_BACFR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|52216777|dbj|BAD49370.1| excinuclease ABC subunit B [Bacteroides fragilis YCH46]
          Length = 677

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 332/667 (49%), Positives = 461/667 (69%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELTSAYKPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   +   +++++ G ++ +   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIERGRTINRNVFLRRLVDSLYMR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++  D   RV+ +G++I+ I E  P++G  I   E  KI
Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAY-SDNLLRVTFWGDEIDGIEEVDPVSGVTIAPFEAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAYFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELVQSEGIVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +  ++  RIL+T LTKRMAE+LTEYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQIRIEKEERILVTTLTKRMAEELTEYLLNNNVRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI-DPIL 737
           RNVN  VI+YAD IT S++L IDET RRREKQL +N++H I PQ +K+ + + V  +   
Sbjct: 542 RNVNGMVIMYADKITDSMRLTIDETNRRREKQLAYNEEHGITPQQIKKARNLSVFGNGAE 601

Query: 738 LEDA----------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
            ED           ++ NI+ D     +SK + +  ++  RK M  AA  L F EAA+ R
Sbjct: 602 TEDTQKGTRAYVEPSSPNIAADPVVQYMSKTQLEKSMERTRKLMQEAAKKLEFIEAAQYR 661

Query: 788 DEIKRLK 794
           DE+ +++
Sbjct: 662 DELLKME 668


>gi|317502714|ref|ZP_07960825.1| excision endonuclease subunit UvrB [Prevotella salivae DSM 15606]
 gi|315666158|gb|EFV05714.1| excision endonuclease subunit UvrB [Prevotella salivae DSM 15606]
          Length = 683

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 327/676 (48%), Positives = 462/676 (68%), Gaps = 23/676 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L +GI      Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FKLTSKYKPTGDQPEAIKELTEGIKDGIPAQVLLGVTGSGKTFTVANVIANVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPNNAVEYYVSYYDYYQPEAYLPTSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            A  +LL  R D IVVSSVSCIYG+G   +  + I+++K G ++++   L  LV   Y R
Sbjct: 123 GAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQESIIKIKRGQTIDRNVFLRKLVDALYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RGTFRV GD+I+I  ++ +++  RV+ + ++I+ I E   +T   I   ET +I
Sbjct: 183 NDIDLQRGTFRVKGDTIDISMAYSDNI-LRVTWWDDEIDSIEEVDNITFHTIERFETYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  R+    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTEHAIRMIQDDLVDRVNYFNEIGDSIKAQRIKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GRNPGE P  L ++ P+D L+ +DESHV++PQI+ MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRNPGERPYCLLDFFPKDYLMVIDESHVSVPQINAMYGGDRARKQNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPL+FEE++ L    I +SATP ++E+E+ +G++VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLKFEEFHNLMHQVIYISATPANYEIEEAEGVVVEQIIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ DEI     +  R+L+T LTKRMAE+LTEYL    I+  Y+HS+V TL
Sbjct: 422 EVRPSENQIDDLMDEILTRINRHERVLVTTLTKRMAEELTEYLLNHEIKANYIHSDVATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIMNDLRAGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RNVN KVI+YADTIT+S+Q  I+ET RRR  QL++N++H I P+ +++KI   +      
Sbjct: 542 RNVNGKVIMYADTITESMQKTIEETARRRSIQLKYNEEHYIIPKQIEKKIGSTLAFSSQT 601

Query: 734 --------------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
                           I LE  A    + D     +SK + +  + +    M  AA +L+
Sbjct: 602 NNNGKEDIRQNSKYKDIYLEPEAGA-FAADPIVKRMSKAELEKSIANTTALMKQAAKDLD 660

Query: 780 FEEAARIRDEIKRLKS 795
           F +AA+ RDEI RL++
Sbjct: 661 FIQAAQYRDEIIRLQN 676


>gi|304382428|ref|ZP_07364927.1| excision endonuclease subunit UvrB [Prevotella marshii DSM 16973]
 gi|304336436|gb|EFM02673.1| excision endonuclease subunit UvrB [Prevotella marshii DSM 16973]
          Length = 675

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 321/670 (47%), Positives = 458/670 (68%), Gaps = 20/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AI QL +G+   +K Q+LLGVTGSGKTFT+A VI  M +P +V++
Sbjct: 4   FSLTSRYSPTGDQPEAIRQLTEGLMRGDKAQVLLGVTGSGKTFTVANVIANMNKPTLVLS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TD YIEK+ SINE+IDR+R 
Sbjct: 64  HNKTLAAQLYEEMKCFFPDNAVEYYVSYYDYYQPEAYLPSTDIYIEKDLSINEEIDRLRL 123

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  +LL  R D IVVSSVSCIYG+G   +  + I+  K G  +++   L  LV   Y R
Sbjct: 124 SAVSALLSGRKDVIVVSSVSCIYGMGGPTAMEKSIIHFKRGQKIDRNTFLRQLVDALYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RG FRV GD++++F ++  ++  RVS + ++I+ I E    T  ++ + +  +I
Sbjct: 184 NDIAPARGNFRVKGDTVDVFMAYSNNI-LRVSFWDDEIDSIEELDTETYHQLASFDAYQI 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A+++I+++L  ++   ++ G  L+AQR+++R+ YD+EM++  G C
Sbjct: 243 YPANLFVTSKEQTKIAIRHIQDDLVEQIRYFQERGEDLQAQRIKERVEYDMEMIKELGHC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G+ P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L +
Sbjct: 303 SGIENYSRYFDGRQAGQRPYCLLDFFPKDYLMVIDESHVSVPQICAMYGGDRARKTNLVQ 362

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE+  +    I VSATP  +EL +  G++VEQ+IRPTGL+DP +
Sbjct: 363 YGFRLPAAFDNRPLRFEEFQSMIHQVIYVSATPADYELNEAGGVVVEQVIRPTGLLDPTI 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E++ +  Q++D+ +EI L  ++G R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V TL
Sbjct: 423 EVKPSENQIDDLLNEIQLCTEKGERVLVTTLTKRMAEELTEYLLNHDIRANYIHSDVSTL 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 483 DRVQIMGDLRAGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RN++ KVI+YADT+T+S+Q  I ET RRR KQ+++N++H+++PQ + ++I   +      
Sbjct: 543 RNIHGKVIMYADTVTESMQRTIAETERRRTKQIQYNEEHHLHPQQIVKEIRNGLRSIHQP 602

Query: 734 --------DPILLEDAATTNISIDAQQLSLSK-KKGKAHLKSLRKQMHLAADNLNFEEAA 784
                    P +  D   +      ++++  + +K  AH + L KQ   AA  L+F +AA
Sbjct: 603 TDKKEQRYAPYIEPDRMISVADPIVKRMTRPQLEKSIAHTQKLMKQ---AAKELDFIQAA 659

Query: 785 RIRDEIKRLK 794
           + RDEI +++
Sbjct: 660 QYRDEILKME 669


>gi|298482857|ref|ZP_07001040.1| excinuclease ABC subunit B [Bacteroides sp. D22]
 gi|298271057|gb|EFI12635.1| excinuclease ABC subunit B [Bacteroides sp. D22]
          Length = 676

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 331/667 (49%), Positives = 465/667 (69%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   YELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   + + +++++ G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMMDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV+ +G++I+ I E  P+TG  I   +  KI
Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPITGVTIAPFDAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFQKMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+L EYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGIYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI----- 733
           RNVN KVI+YAD +T S++L IDET RRREKQL +N+ + I PQ +K+ + + V      
Sbjct: 542 RNVNGKVIMYADRMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNAKE 601

Query: 734 -DPILLE-----DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
            D +L E     + +T NI+ D     +SK + +  ++  RK M  AA  L F EAA+ R
Sbjct: 602 ADELLKERHAYVEPSTPNIAADPVVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQYR 661

Query: 788 DEIKRLK 794
           DE+ +L+
Sbjct: 662 DELLKLE 668


>gi|295083906|emb|CBK65429.1| Excinuclease ABC subunit B [Bacteroides xylanisolvens XB1A]
          Length = 676

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 331/667 (49%), Positives = 465/667 (69%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   YELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   + + +++++ G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMMDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV+ +G++I+ I E  P+TG  I   +  KI
Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPITGVTIAPFDAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFQEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+L EYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGIYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI----- 733
           RNVN KVI+YAD +T S++L IDET RRREKQL +N+ + I PQ +K+ + + V      
Sbjct: 542 RNVNGKVIMYADRMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNAKE 601

Query: 734 -DPILLE-----DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
            D +L E     + +T NI+ D     +SK + +  ++  RK M  AA  L F EAA+ R
Sbjct: 602 ADELLKERHAYVEPSTPNIAADPVVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQYR 661

Query: 788 DEIKRLK 794
           DE+ +L+
Sbjct: 662 DELLKLE 668


>gi|255311406|ref|ZP_05353976.1| excinuclease ABC subunit B [Chlamydia trachomatis 6276]
 gi|255317707|ref|ZP_05358953.1| excinuclease ABC subunit B [Chlamydia trachomatis 6276s]
          Length = 668

 Score =  622 bits (1604), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 328/665 (49%), Positives = 436/665 (65%), Gaps = 19/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   + P GDQP AI +L +GI      Q+LLG TGSGKTFTMA VI  +  P +V+A
Sbjct: 10  FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVIANVNVPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 70  HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G    + +L S LV+  Y+  
Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R  FR  G  I+IF ++  D+A R+    + +  I    PLT        +I +Y
Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ R++    EGR +E +RL QR T+D+EM++  G C+
Sbjct: 249 PGSHYVTPEAVREQAIRTIREELEQRMLFF--EGRPVEQERLFQRTTHDIEMIKEIGFCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PGEPP  L +Y P+D LL +DESH T+PQ+  MYRGD  RK +L EY
Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  E+++ +G I+EQIIRPTG+ DP  E
Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDPLPE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           IR A+ Q++D+ +EI    +Q LR     IL+  +TK++AED+  +L E  I   Y+HS 
Sbjct: 427 IRPAKGQIDDLLEEI----RQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAATYLHSG 482

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           ++T ER +I+ DLRLG  DVL+G+NLLREG+D+PE  LVAILDADKEGFLRS  SLIQ  
Sbjct: 483 IETAERTQILTDLRLGNIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFC 542

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN++ KVI YAD IT S+   + ET RRR+ QL++N++H I PQ + + I+   +P
Sbjct: 543 GRAARNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPILA--NP 600

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           I  E A      +  Q    S K+ +A +K+  + M+ AA    F+EAA+ RD +   K 
Sbjct: 601 ITKE-AGQEETRLKMQ----SSKELEASIKTYEEAMYQAAQKFQFDEAAKYRDLMNAAKK 655

Query: 796 SPYFQ 800
              FQ
Sbjct: 656 QLLFQ 660


>gi|237804937|ref|YP_002889091.1| excinuclease ABC subunit B [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273237|emb|CAX10150.1| excinuclease ABC subunit B [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 668

 Score =  622 bits (1603), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 328/665 (49%), Positives = 436/665 (65%), Gaps = 19/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   + P GDQP AI +L +GI      Q+LLG TGSGKTFTMA VI  +  P +V+A
Sbjct: 10  FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVIANVNVPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 70  HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G    + +L S LV+  Y+  
Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R  FR  G  I+IF ++  D+A R+    + +  I    PLT        +I +Y
Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ R++    EGR +E +RL QR T+D+EM++  G C+
Sbjct: 249 PGSHYVTPEAVREQAIRTIREELEQRMLFF--EGRPVEQERLFQRTTHDIEMIKEIGFCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PGEPP  L +Y P+D LL +DESH T+PQ+  MYRGD  RK +L EY
Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  E+++ +G I+EQIIRPTG+ DP  E
Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDPLPE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           IR A+ Q++D+ +EI    +Q LR     IL+  +TK++AED+  +L E  I   Y+HS 
Sbjct: 427 IRPAKGQIDDLLEEI----RQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAATYLHSG 482

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           ++T ER +I+ DLRLG  DVL+G+NLLREG+D+PE  LVAILDADKEGFLRS  SLIQ  
Sbjct: 483 IETAERTQILTDLRLGNIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFC 542

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN++ KVI YAD IT S+   + ET RRR+ QL++N++H I PQ + + I+   +P
Sbjct: 543 GRAARNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPILA--NP 600

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           I  E A      +  Q    S K+ +A +K+  + M+ AA    F+EAA+ RD +   K 
Sbjct: 601 ITKE-AGQEETRLKMQ----SSKELEASIKTYEEAMYQAAQEFQFDEAAKYRDLMNAAKK 655

Query: 796 SPYFQ 800
              FQ
Sbjct: 656 QLLFQ 660


>gi|237714491|ref|ZP_04544972.1| excinuclease ABC subunit B [Bacteroides sp. D1]
 gi|262406355|ref|ZP_06082904.1| excinuclease ABC, B subunit [Bacteroides sp. 2_1_22]
 gi|294643236|ref|ZP_06721062.1| excinuclease ABC, B subunit [Bacteroides ovatus SD CC 2a]
 gi|294806429|ref|ZP_06765270.1| excinuclease ABC, B subunit [Bacteroides xylanisolvens SD CC 1b]
 gi|229445260|gb|EEO51051.1| excinuclease ABC subunit B [Bacteroides sp. D1]
 gi|262355058|gb|EEZ04149.1| excinuclease ABC, B subunit [Bacteroides sp. 2_1_22]
 gi|292641359|gb|EFF59551.1| excinuclease ABC, B subunit [Bacteroides ovatus SD CC 2a]
 gi|294446292|gb|EFG14918.1| excinuclease ABC, B subunit [Bacteroides xylanisolvens SD CC 1b]
          Length = 676

 Score =  622 bits (1603), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 330/667 (49%), Positives = 465/667 (69%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   YELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   + + +++++ G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMMDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV+ +G++I+ + E  P+TG  I   +  KI
Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGVEEVDPITGVTIAPFDAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFQEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+L EYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGIYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI----- 733
           RNVN KVI+YAD +T S++L IDET RRREKQL +N+ + I PQ +K+ + + V      
Sbjct: 542 RNVNGKVIMYADRMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNAKE 601

Query: 734 -DPILLE-----DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
            D +L E     + +T NI+ D     +SK + +  ++  RK M  AA  L F EAA+ R
Sbjct: 602 ADELLKERHAYVEPSTPNIAADPVVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQYR 661

Query: 788 DEIKRLK 794
           DE+ +L+
Sbjct: 662 DELLKLE 668


>gi|15605315|ref|NP_220101.1| excinuclease ABC subunit B [Chlamydia trachomatis D/UW-3/CX]
 gi|237803015|ref|YP_002888209.1| excinuclease ABC subunit B [Chlamydia trachomatis B/Jali20/OT]
 gi|6226295|sp|O84590|UVRB_CHLTR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|3329029|gb|AAC68188.1| Exinuclease ABC Subunit B [Chlamydia trachomatis D/UW-3/CX]
 gi|231274249|emb|CAX11043.1| excinuclease ABC subunit B [Chlamydia trachomatis B/Jali20/OT]
 gi|296436120|gb|ADH18294.1| excinuclease ABC subunit B [Chlamydia trachomatis G/9768]
 gi|296437980|gb|ADH20141.1| excinuclease ABC subunit B [Chlamydia trachomatis G/11074]
 gi|297140482|gb|ADH97240.1| excinuclease ABC subunit B [Chlamydia trachomatis G/9301]
 gi|297748716|gb|ADI51262.1| Excinuclease ABC subunit B [Chlamydia trachomatis D-EC]
 gi|297749596|gb|ADI52274.1| Excinuclease ABC subunit B [Chlamydia trachomatis D-LC]
          Length = 668

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 328/665 (49%), Positives = 436/665 (65%), Gaps = 19/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   + P GDQP AI +L +GI      Q+LLG TGSGKTFTMA VI  +  P +V+A
Sbjct: 10  FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVIANVNVPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 70  HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G    + +L S LV+  Y+  
Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R  FR  G  I+IF ++  D+A R+    + +  I    PLT        +I +Y
Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ R++    EGR +E +RL QR T+D+EM++  G C+
Sbjct: 249 PGSHYVTPEAVREQAIRTIREELEQRMLFF--EGRPVEQERLFQRTTHDIEMIKEIGFCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PGEPP  L +Y P+D LL +DESH T+PQ+  MYRGD  RK +L EY
Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  E+++ +G I+EQIIRPTG+ DP  E
Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDPLPE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           IR A+ Q++D+ +EI    +Q LR     IL+  +TK++AED+  +L E  I   Y+HS 
Sbjct: 427 IRPAKGQIDDLLEEI----RQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAATYLHSG 482

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           ++T ER +I+ DLRLG  DVL+G+NLLREG+D+PE  LVAILDADKEGFLRS  SLIQ  
Sbjct: 483 IETAERTQILTDLRLGNIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFC 542

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN++ KVI YAD IT S+   + ET RRR+ QL++N++H I PQ + + I+   +P
Sbjct: 543 GRAARNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPILA--NP 600

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           I  E A      +  Q    S K+ +A +K+  + M+ AA    F+EAA+ RD +   K 
Sbjct: 601 ITKE-AGQEETRLKMQ----SSKELEASIKTYEEAMYQAAQEFQFDEAAKYRDLMNAAKK 655

Query: 796 SPYFQ 800
              FQ
Sbjct: 656 QLLFQ 660


>gi|269302592|gb|ACZ32692.1| excinuclease ABC, B subunit [Chlamydophila pneumoniae LPCoLN]
          Length = 657

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 325/655 (49%), Positives = 433/655 (66%), Gaps = 8/655 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   + P GDQP AIA+L  G+ ++ K Q+LLG TGSGKTFT+A V+  +  P +V+A
Sbjct: 3   FQLHAPFAPCGDQPEAIARLSAGVRNQVKSQVLLGTTGSGKTFTIANVVANVNLPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+ FFP+NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 63  HNKTLAAQLYQEFREFFPNNAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSSVSCIYGIGS E+Y+ M + L++G    +  L + LVK  Y+  
Sbjct: 123 SATRSILERRDTLIVSSVSCIYGIGSPENYTSMALVLEVGKEYPRNILTAQLVKMHYQAS 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            I   R  FR  G  I+IFP++  ++A R+    + +  I    PLT     +V +  +Y
Sbjct: 183 PIP-QRSAFRERGSVIDIFPAYESELALRLEFLNDTLTSIEYSDPLTMIPKESVSSATLY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P      A++ I+EEL+ R+   +   R +E  R+  R T+D+EM++  G C+
Sbjct: 242 PGSHYVIPEAIREQAIRTIQEELEERMAFFDD--RPIEKDRIFHRTTHDIEMIKEIGFCK 299

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PG PP  L +Y PED LL +DESH T+PQI  MYRGD  RK +L EY
Sbjct: 300 GIENYSRHFTGAPPGAPPTCLLDYFPEDFLLVIDESHQTLPQIRAMYRGDQSRKQSLVEY 359

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  E+++  G IV+QIIRPTG+ DP  E
Sbjct: 360 GFRLPSAFDNRPLTYEEAQKYFRKVIYVSATPGDTEVQESSGHIVQQIIRPTGIPDPMPE 419

Query: 561 IRSARTQVEDVYDEINL-AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           IR A  QV+D+ +EI L  +Q+  +IL+  +TK++AED+  +L E  I   Y+HS ++T 
Sbjct: 420 IRPATGQVDDLLEEIRLRLSQKHEKILVISITKKLAEDMAGFLSELEIPAAYLHSGIETA 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +I+ DLR G  DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS +SLIQ  GRAA
Sbjct: 480 ERTQILTDLRSGVIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAA 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N KVI YAD  T+SI+  + ET RRR+ QL++NK+HNI P+ + + I    +PIL  
Sbjct: 540 RNINGKVIFYADQKTRSIEETLRETERRRQIQLDYNKEHNIVPKPIIKAIFA--NPIL-- 595

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             +  + S    Q  LSK+  +  +K     M  AA    F EAA+ RD ++  K
Sbjct: 596 QTSKDSESPKESQRPLSKEDLEEQIKKYEALMQRAAKEFRFNEAAKYRDAMQACK 650


>gi|255009580|ref|ZP_05281706.1| excinuclease ABC subunit B [Bacteroides fragilis 3_1_12]
 gi|313147357|ref|ZP_07809550.1| excinuclease ABC subunit B [Bacteroides fragilis 3_1_12]
 gi|313136124|gb|EFR53484.1| excinuclease ABC subunit B [Bacteroides fragilis 3_1_12]
          Length = 677

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 329/669 (49%), Positives = 458/669 (68%), Gaps = 18/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELTSAYKPTGDQPEAIAQLTEGVLEGIPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYGEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   +   +++++ G ++ +   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYDNVIEIERGRTINRNVFLRRLVDSLYMR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++  D   RV+ +G++I+ I E  P++G  I   E  KI
Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAY-SDNLLRVTFWGDEIDGIEEVDPVSGVTIAPFEAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAYFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELVQSEGIVVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+LTEYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEREERVLVTTLTKRMAEELTEYLLNNNVRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK------------- 726
           RNVN  VI+YAD IT S++L IDET RRREKQL +N++H I PQ +K             
Sbjct: 542 RNVNGMVIMYADKITDSMRLTIDETNRRREKQLAYNEEHGITPQQIKKARNLAVFGNGNE 601

Query: 727 -EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
            E+  +     +  + ++ NI+ D     +SK + +  ++  RK M  AA  L F EAA+
Sbjct: 602 MEETQKATRAYV--EPSSPNIAADPVVQYMSKAQLEKSMERTRKLMQEAAKKLEFIEAAQ 659

Query: 786 IRDEIKRLK 794
            RDE+ +++
Sbjct: 660 YRDELLKME 668


>gi|15618710|ref|NP_224996.1| excinuclease ABC subunit B [Chlamydophila pneumoniae CWL029]
 gi|15836334|ref|NP_300858.1| excinuclease ABC subunit B [Chlamydophila pneumoniae J138]
 gi|16752239|ref|NP_445607.1| excinuclease ABC subunit B [Chlamydophila pneumoniae AR39]
 gi|33242161|ref|NP_877102.1| excinuclease ABC subunit B [Chlamydophila pneumoniae TW-183]
 gi|6831709|sp|Q9Z7A5|UVRB_CHLPN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|4377112|gb|AAD18939.1| Exinuclease ABC Subunit B [Chlamydophila pneumoniae CWL029]
 gi|7189983|gb|AAF38842.1| excinuclease ABC, subunit B [Chlamydophila pneumoniae AR39]
 gi|8979175|dbj|BAA99009.1| exinuclease ABC subunit B [Chlamydophila pneumoniae J138]
 gi|33236672|gb|AAP98759.1| excinuclease ABC chain B [Chlamydophila pneumoniae TW-183]
          Length = 657

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 325/655 (49%), Positives = 433/655 (66%), Gaps = 8/655 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   + P GDQP AIA+L  G+ ++ K Q+LLG TGSGKTFT+A V+  +  P +V+A
Sbjct: 3   FQLHAPFAPCGDQPEAIARLSAGVRNQVKSQVLLGTTGSGKTFTIANVVANVNLPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+ FFP+NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 63  HNKTLAAQLYQEFREFFPNNAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSSVSCIYGIGS E+Y+ M + L++G    +  L + LVK  Y+  
Sbjct: 123 SATRSILERRDTLIVSSVSCIYGIGSPENYTSMALVLEVGKEYPRNILTAQLVKMHYQAS 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            I   R  FR  G  I+IFP++  ++A R+    + +  I    PLT     +V +  +Y
Sbjct: 183 PIP-QRSAFRERGSVIDIFPAYESELALRLEFLNDTLTSIEYSDPLTMIPKESVPSATLY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P      A++ I+EEL+ R+   +   R +E  R+  R T+D+EM++  G C+
Sbjct: 242 PGSHYVIPEAIREQAIRTIQEELEERMAFFDD--RPIEKDRIFHRTTHDIEMIKEIGFCK 299

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PG PP  L +Y PED LL +DESH T+PQI  MYRGD  RK +L EY
Sbjct: 300 GIENYSRHFTGAPPGAPPTCLLDYFPEDFLLIIDESHQTLPQIRAMYRGDQSRKQSLVEY 359

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  E+++  G IV+QIIRPTG+ DP  E
Sbjct: 360 GFRLPSAFDNRPLTYEEAQKYFRKVIYVSATPGDTEVQESSGHIVQQIIRPTGIPDPMPE 419

Query: 561 IRSARTQVEDVYDEINL-AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           IR A  QV+D+ +EI L  +Q+  +IL+  +TK++AED+  +L E  I   Y+HS ++T 
Sbjct: 420 IRPATGQVDDLLEEIRLRLSQKHEKILVISITKKLAEDMAGFLSELEIPAAYLHSGIETA 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +I+ DLR G  DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS +SLIQ  GRAA
Sbjct: 480 ERTQILTDLRSGVIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAA 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N KVI YAD  T+SI+  + ET RRR+ QL++NK+HNI P+ + + I    +PIL  
Sbjct: 540 RNINGKVIFYADQKTRSIEETLRETERRRQIQLDYNKEHNIVPKPIIKAIFA--NPIL-- 595

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             +  + S    Q  LSK+  +  +K     M  AA    F EAA+ RD ++  K
Sbjct: 596 QTSKDSESPKESQRPLSKEDLEEQIKKYEALMQRAAKEFRFNEAAKYRDAMQACK 650


>gi|193222362|emb|CAL62189.2| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
           [Herminiimonas arsenicoxydans]
          Length = 658

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 300/589 (50%), Positives = 409/589 (69%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AIA+LL  I      Q L G+TGSGKTFTMA VI  ++RP +++A
Sbjct: 6   FILHSSYTPAGDQPEAIARLLSDIEEGATHQTLKGITGSGKTFTMANVIHRLKRPTLILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK L AQLY E K+FFP NAVEYFVSYYDY+QPE Y+P TD +I K+S+IN+ ++R+R 
Sbjct: 66  PNKTLTAQLYGEMKHFFPENAVEYFVSYYDYFQPEIYMPGTDRFIPKDSAINDHLERLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+SL+ER D IVV+SVS IYG+G  E+Y  + + L  G  + Q+EL+  L   QY R 
Sbjct: 126 STTKSLIERRDVIVVASVSSIYGLGDPEAYRALQIALSPGVKLNQRELIRRLALLQYDRT 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + R TFR  GD I+IFP+  E  A RV +  + +  +    P+TG+ +  ++   + 
Sbjct: 186 ERTLKRATFRAQGDVIDIFPADSEHRAVRVELLDDSVASVQWLDPVTGKTLGAIDHYLVS 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + +  P   +++A K I  +++ R+ EL +  RL+EA RL +RIT+D+EM+   G C 
Sbjct: 246 PKTLFAPPTNKIDSASKKILADMEERVAELNRNNRLVEANRLYERITHDVEMMREVGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS Y + R+P  PP TL +Y+P+D LLFVDESHV +PQIS MYRGD  RK TL +Y
Sbjct: 306 GMENYSCYFSERDPASPPITLLDYLPKDGLLFVDESHVMVPQISAMYRGDQARKETLIDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPL F E+  ++P TI VSATPG +EL   +  +VEQ+IRPTGL+DP VE
Sbjct: 366 GFRLPSSKNNRPLNFGEFEKVKPQTIFVSATPGDYELRVSKDRVVEQVIRPTGLLDPKVE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A   ++D+  EI+   ++  R+L+T LTK  AE+LT++L +  IR RYMHS++K  +
Sbjct: 426 VRKADGYIDDLLAEISKCVKKKNRVLVTTLTKVSAEELTDFLTDNGIRARYMHSDIKAED 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII  LR G+FDVL+GI+LLREGLDIPE  LVAILDAD+ GFLRS  +LIQ IGR AR
Sbjct: 486 RVEIINGLRAGEFDVLIGISLLREGLDIPEASLVAILDADRAGFLRSAHALIQMIGRVAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           N N K ILYAD +T +++ AIDET RRR+ Q+  N+++ I+P S   K+
Sbjct: 546 NENGKAILYADAVTPAMKQAIDETNRRRQLQIAFNEENGISPASSVRKL 594


>gi|255348968|ref|ZP_05380975.1| excinuclease ABC subunit B [Chlamydia trachomatis 70]
 gi|255503507|ref|ZP_05381897.1| excinuclease ABC subunit B [Chlamydia trachomatis 70s]
 gi|255507185|ref|ZP_05382824.1| excinuclease ABC subunit B [Chlamydia trachomatis D(s)2923]
 gi|289525631|emb|CBJ15109.1| excinuclease ABC subunit B [Chlamydia trachomatis Sweden2]
 gi|296435193|gb|ADH17371.1| excinuclease ABC subunit B [Chlamydia trachomatis E/150]
 gi|296438912|gb|ADH21065.1| excinuclease ABC subunit B [Chlamydia trachomatis E/11023]
          Length = 668

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 327/665 (49%), Positives = 436/665 (65%), Gaps = 19/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   + P GDQP AI +L +GI      Q+LLG TGSGKTFTMA VI  +  P +V+A
Sbjct: 10  FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVIANVNVPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 70  HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G    + +L S LV+  Y+  
Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R  FR  G  I+IF ++  D+A R+    + +  I    PLT        +I +Y
Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ R++  E+  R +E +RL QR T+D+EM++  G C+
Sbjct: 249 PGSHYVTPEAIREQAIRTIREELEQRMLFFEE--RPVEQERLFQRTTHDIEMIKEIGFCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PGEPP  L +Y P+D LL +DESH T+PQ+  MYRGD  RK +L EY
Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  E+++ +G I+EQIIRPTG+ DP  E
Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDPLPE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           IR A+ Q++D+ +EI    +Q LR     IL+  +TK++AED+  +L E  I   Y+HS 
Sbjct: 427 IRPAKGQIDDLLEEI----RQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAAAYLHSG 482

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           ++T ER +I+ DLRLG  DVL+G+NLLREG+D+PE  LVAILDADKEGFLRS  SLIQ  
Sbjct: 483 IETAERTQILTDLRLGNLDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFC 542

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN++ KVI YAD IT S+   + ET RRR+ QL++N++H I PQ + + I+   +P
Sbjct: 543 GRAARNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPILA--NP 600

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           I  E A      +  Q    S K+ +A +K+  + M+ AA    F+EAA+ RD +   K 
Sbjct: 601 ITKE-AGQEETRLKMQ----SSKELEASIKTYEEAMYQAAQEFQFDEAAKYRDLMNAAKK 655

Query: 796 SPYFQ 800
              FQ
Sbjct: 656 QLLFQ 660


>gi|76789323|ref|YP_328409.1| excinuclease ABC subunit B [Chlamydia trachomatis A/HAR-13]
 gi|90110880|sp|Q3KLB1|UVRB_CHLTA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|76167853|gb|AAX50861.1| excinuclease ABC subunit B [Chlamydia trachomatis A/HAR-13]
          Length = 668

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 327/665 (49%), Positives = 435/665 (65%), Gaps = 19/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   + P GDQP AI +L +GI      Q+LLG TGSGKTFTMA VI  +  P +V+A
Sbjct: 10  FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVIANVNVPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 70  HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G    + +L S LV+  Y+  
Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R  FR  G  I+IF ++  D+A R+    + +  I    PLT        +I +Y
Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ R++    EGR +E +RL QR T+D+EM++  G C+
Sbjct: 249 PGSHYVTPEAVREQAIRTIREELEQRMLFF--EGRPVEQERLFQRTTHDIEMIKEIGFCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PGEPP  L +Y P+D LL +DESH T+PQ+  MYRGD  RK +L EY
Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  E+++ +G I+EQIIRPTG+ DP  E
Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDPLPE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           IR A+ Q++D+ +EI    +Q LR     IL+  +TK++AED+  +L E  I   Y+HS 
Sbjct: 427 IRPAKGQIDDLLEEI----RQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAATYLHSG 482

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           ++T ER +I+ DLRLG  DVL+G+NLLREG+D+PE  LVAILDADKEGFLRS  SLIQ  
Sbjct: 483 IETAERTQILTDLRLGNIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFC 542

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN++ KVI YAD IT S+   + ET RRR+ QL++N++H I PQ + + I+   +P
Sbjct: 543 GRAARNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPILA--NP 600

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           I  E A      +  Q    S K+ +A +K+  + M+ AA    F+EA + RD +   K 
Sbjct: 601 ITKE-AGQEETRLKMQ----SSKELEASIKTYEEAMYQAAQEFQFDEAVKYRDLMNAAKK 655

Query: 796 SPYFQ 800
              FQ
Sbjct: 656 QLLFQ 660


>gi|296437049|gb|ADH19219.1| excinuclease ABC subunit B [Chlamydia trachomatis G/11222]
          Length = 668

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 327/665 (49%), Positives = 435/665 (65%), Gaps = 19/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   + P GDQP AI +L +GI      Q+LLG TGSGKTFTMA V   +  P +V+A
Sbjct: 10  FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVTANVNVPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 70  HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G    + +L S LV+  Y+  
Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R  FR  G  I+IF ++  D+A R+    + +  I    PLT        +I +Y
Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ R++    EGR +E +RL QR T+D+EM++  G C+
Sbjct: 249 PGSHYVTPEAVREQAIRTIREELEQRMLFF--EGRPVEQERLFQRTTHDIEMIKEIGFCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PGEPP  L +Y P+D LL +DESH T+PQ+  MYRGD  RK +L EY
Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  E+++ +G I+EQIIRPTG+ DP  E
Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDPLPE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           IR A+ Q++D+ +EI    +Q LR     IL+  +TK++AED+  +L E  I   Y+HS 
Sbjct: 427 IRPAKGQIDDLLEEI----RQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAATYLHSG 482

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           ++T ER +I+ DLRLG  DVL+G+NLLREG+D+PE  LVAILDADKEGFLRS  SLIQ  
Sbjct: 483 IETAERTQILTDLRLGNIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFC 542

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN++ KVI YAD IT S+   + ET RRR+ QL++N++H I PQ + + I+   +P
Sbjct: 543 GRAARNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPILA--NP 600

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           I  E A      +  Q    S K+ +A +K+  + M+ AA    F+EAA+ RD +   K 
Sbjct: 601 ITKE-AGQEETRLKMQ----SSKELEASIKTYEEAMYQAAQEFQFDEAAKYRDLMNAAKK 655

Query: 796 SPYFQ 800
              FQ
Sbjct: 656 QLLFQ 660


>gi|291557561|emb|CBL34678.1| Excinuclease ABC subunit B [Eubacterium siraeum V10Sc8a]
          Length = 572

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 295/546 (54%), Positives = 391/546 (71%), Gaps = 2/546 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++++Y P GDQP AI  L  G+   +K Q+LLGVTGSGKTFTMA +IE + RP +++A
Sbjct: 4   FVLKSNYKPMGDQPQAIDSLANGVLDGDKEQVLLGVTGSGKTFTMANIIEKVNRPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAY+P TD YIEK+S+IN++IDR+RH
Sbjct: 64  HNKTLAAQLCSEFKEFFPDNAVEYFVSYYDYYQPEAYIPSTDAYIEKDSAINDEIDRLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +GS E Y + ++ ++ G    + +++  LV+ QY+R 
Sbjct: 124 SATAALAERRDVIIVASVSCIYSLGSPEDYRENMLSIREGQERSRDDIIKRLVEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPS-HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           D+  IR  FRV GD +E+FP+    D A R+  FG++I+ ISE   +TG+  R    + I
Sbjct: 184 DMNFIRNKFRVRGDVLEVFPAGSTSDKAIRIEFFGDEIDRISEIDIVTGEVKRRFSHVAI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SHY+  +  L  ++  I+ E++ R+       +L+EAQR+EQR  YD+EML   G+C
Sbjct: 244 FPASHYIVSKARLENSLTEIENEMEERVKFFTDNHKLIEAQRIEQRTRYDMEMLREIGTC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           + +ENYSR L GR PG  P TL  + P+D L+F+DESHVT+PQ+ GMY GDF RK  L +
Sbjct: 304 KGVENYSRVLAGRAPGSSPITLMHHFPKDFLMFIDESHVTLPQVRGMYGGDFARKKNLVD 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS  DNRP+ F+E+  +    I VSATPG +E         EQ+IRPTGL+DP +
Sbjct: 364 YGFRLPSAYDNRPMNFDEFTSMINQVIYVSATPGEYEKSHAVN-TAEQVIRPTGLLDPII 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EI+    Q+ED+Y EIN   ++G  +L+T LTK+MAEDLT Y  +  +++RYMH ++ ++
Sbjct: 423 EIKPVAGQIEDLYSEINERTKKGECVLITTLTKKMAEDLTAYYEKLGVKIRYMHHDIDSI 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLR+  FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAA
Sbjct: 483 ERMEIIRDLRMHVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAA 542

Query: 680 RNVNSK 685
           RN   +
Sbjct: 543 RNAEGQ 548


>gi|281422445|ref|ZP_06253444.1| excinuclease ABC subunit B [Prevotella copri DSM 18205]
 gi|281403508|gb|EFB34188.1| excinuclease ABC subunit B [Prevotella copri DSM 18205]
          Length = 681

 Score =  619 bits (1595), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 325/674 (48%), Positives = 454/674 (67%), Gaps = 22/674 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL +G+   +  Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FKITSKYKPTGDQPQAIRQLTEGVLEGDPAQVLLGVTGSGKTFTVANVIANVGKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYQEMKGFFPENAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            A  +LL  R D IVVSSVSCIYG+G   +  + I+++  G  +++ E L  LV   Y R
Sbjct: 123 GAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQENIIKIHRGQRLDRNEFLRKLVDALYIR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV G++++IF ++  D   RV+ + ++I+ I E   LT  ++ + E  +I
Sbjct: 183 NDIELQRGNFRVKGETVDIFMAY-SDHVLRVTWWDDEIDSIEEVDSLTYHRLASFEDYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +    +A++ I+++L  ++   +  G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTTKEQQESAIRRIQDDLVKQVEFFKSIGDGIKAQRIKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR+ GE P  L ++ P+D LL VDESHV+IPQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRHEGERPYCLLDFFPKDFLLVVDESHVSIPQIGAMYGGDRARKKNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPL+FEE++ L P  I VSATP  +EL + +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLKFEEFHDLIPQAIYVSATPADYELREAEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ DEI     +  R+L+T LTKRMAE+LTE+L   N++  Y+HS+V TL
Sbjct: 422 EVRPSENQIDDLLDEILTRTHRNERVLITTLTKRMAEELTEFLLNHNVKAAYIHSDVATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIMNDLRAGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI+YAD IT S+Q  IDET RRR  QL++N  H I P+ + + I   + P   E
Sbjct: 542 RNVNGKVIMYADNITDSMQKTIDETARRRSIQLKYNADHGITPKQIVKAITSAL-PTSKE 600

Query: 740 DAA-------------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
           + A                   +     D    S+SK++ +  + +    M  AA +L+F
Sbjct: 601 EGAKIVPMGAEGSKPRVYVEPESAAFVADPIVRSMSKEELEKSIANTTALMKQAAKDLDF 660

Query: 781 EEAARIRDEIKRLK 794
            +AA+ RDEI RL+
Sbjct: 661 MQAAQYRDEIIRLQ 674


>gi|325851994|ref|ZP_08171077.1| excinuclease ABC, B subunit [Prevotella denticola CRIS 18C-A]
 gi|325484550|gb|EGC87466.1| excinuclease ABC, B subunit [Prevotella denticola CRIS 18C-A]
          Length = 681

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 324/681 (47%), Positives = 465/681 (68%), Gaps = 35/681 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L  G+   +K Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FKLTSKYRPTGDQPEAIRELTDGLERGDKSQVLLGVTGSGKTFTVANVIANVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKAFFPDNAVEYYVSYYDYYQPEAYMPTTDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  SLL  R D IVVSSVSCIYG+G+  +  + ++ ++ G +V++ + L  LV   Y R
Sbjct: 123 SAVSSLLSGRKDVIVVSSVSCIYGMGAPVAMKENVIPVRKGQTVDRNDFLRRLVDALYMR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++ ++V  R++ + ++I+ I E   +   +I + +  +I
Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYNDNV-LRITWWDDEIDTIEEVDSVDFHRIASFDDYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +    +A++ I+++L  ++   +  G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTESAIRQIQDDLVKQVDFFKGIGDNIKAQRIKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G+ P  L ++ P+D L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRQAGQRPYCLLDFFPKDYLMVIDESHVSVPQISAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE++ L    I VSATP  +EL++ +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLRFEEFHSLIHQVIYVSATPADYELKEAEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI + A++  R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V  L
Sbjct: 422 EVRPSENQIDDLMNEIVVRAEKEERVLVTTLTKRMAEELTEYLLNHDIRTAYIHSDVAGL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +RI II DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRIAIINDLRAGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++ KVI+YAD IT+S+Q  IDET RRR KQL++N++H+I P+ +   I   +      
Sbjct: 542 RNIHGKVIMYADNITESMQKTIDETIRRRTKQLKYNEEHHITPKQIVRAIKGTL------ 595

Query: 740 DAATTNISIDAQQLSLSKKKGKAHL---------------KSLRKQ-----------MHL 773
             A +  +  +Q  S+++K G+A++               K  R Q           M  
Sbjct: 596 -PAGSEGNTTSQTASIARKTGQAYVEPDNGMLFAADPVITKMSRAQLEKSIENTTALMKQ 654

Query: 774 AADNLNFEEAARIRDEIKRLK 794
           AA +L+F +AA+ RDEI RL+
Sbjct: 655 AAKDLDFLQAAQYRDEIIRLQ 675


>gi|166154801|ref|YP_001654919.1| excinuclease ABC subunit B [Chlamydia trachomatis 434/Bu]
 gi|166155676|ref|YP_001653931.1| excinuclease ABC subunit B [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336077|ref|ZP_07224321.1| excinuclease ABC subunit B [Chlamydia trachomatis L2tet1]
 gi|165930789|emb|CAP04286.1| excinuclease ABC subunit B [Chlamydia trachomatis 434/Bu]
 gi|165931664|emb|CAP07240.1| excinuclease ABC subunit B [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 668

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 327/665 (49%), Positives = 435/665 (65%), Gaps = 19/665 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   + P GDQP AI +L +GI      Q+LLG TGSGKTFTMA VI  +  P +V+A
Sbjct: 10  FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVIANVNVPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 70  HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G    + +L S LV+  Y+  
Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R  FR  G  I+IF ++  D+A R+    + +  I    PLT        +I +Y
Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ R++    EGR +E +RL QR T+D+EM++  G C+
Sbjct: 249 PGSHYVTPEAVREQAIRTIREELEQRMLFF--EGRPVEQERLFQRTTHDIEMIKEIGFCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PGEPP  L +Y P+D LL +DESH T+PQ+  MYRGD  RK +L EY
Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  E+++ +G I+EQIIRPTG+ D   E
Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDLLPE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           IR A+ Q++D+ +EI    +Q LR     IL+  +TK++AED+  +L E  I   Y+HS 
Sbjct: 427 IRPAKGQIDDLLEEI----RQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAAAYLHSG 482

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           ++T ER +I+ DLRLG  DVL+G+NLLREG+D+PE  LVAILDADKEGFLRS  SLIQ  
Sbjct: 483 IETAERTQILTDLRLGNIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFC 542

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN++ KVI YAD IT S+   + ET RRR+ QL++N++H I PQ + + I+   +P
Sbjct: 543 GRAARNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPILA--NP 600

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           I  E A      +  Q    S K+ +A +K+  + M+ AA    F+EAA+ RD +   K 
Sbjct: 601 ITKE-AGQEETRLKMQ----SSKELEASIKTYEEAMYQAAQEFQFDEAAKYRDLMNAAKK 655

Query: 796 SPYFQ 800
              FQ
Sbjct: 656 QLLFQ 660


>gi|239618098|ref|YP_002941420.1| excinuclease ABC, B subunit [Kosmotoga olearia TBF 19.5.1]
 gi|259710329|sp|C5CFR8|UVRB_KOSOT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|239506929|gb|ACR80416.1| excinuclease ABC, B subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 667

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 324/659 (49%), Positives = 441/659 (66%), Gaps = 7/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++  + P GDQP AI +L++G+   ++ Q LLGVTGSGKTFTMA +IE +Q+PA+V++
Sbjct: 3   FNLKAPFEPRGDQPEAITRLVEGLRRGDRFQTLLGVTGSGKTFTMASIIERVQQPALVIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK L AQLY EF++FFP N VE F+SYYDYYQPEAY+P  D YIEK++ IN+ + RMR 
Sbjct: 63  PNKALVAQLYREFRSFFPENRVELFISYYDYYQPEAYIPTKDLYIEKDADINDLLARMRI 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA +S+L R D +VV+SVS IY  G    + ++ + L+IG  + + EL   L   QY R 
Sbjct: 123 SALKSVLTRKDVVVVASVSAIYASGDPRDFQELNISLEIGQRIPRNELALKLASIQYSRS 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +     G F + GD +EIFP + ED   R+  F ++IE I  F P+  + +   + I IY
Sbjct: 183 EDISSGGVFHLRGDVVEIFPPY-EDYGIRIYFFDDEIERIISFDPMNRKTLEEFDRIIIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               +VT    +  A+K I+ +L++R  ELEK G+ LEAQRL+QR  YDLEML T G C 
Sbjct: 242 PAKEFVTTEEKIKHAVKEIERDLELRAKELEKNGKYLEAQRLKQRTLYDLEMLTTLGYCS 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLL-FVDESHVTIPQISGMYRGDFHRKATLAE 499
            IENYSRY  GR PGEPP T+ +Y  +  ++ F+DESH+T+PQI  MY GD  RK  L E
Sbjct: 302 GIENYSRYFDGRKPGEPPYTILDYFDKSEMIVFLDESHITVPQIRAMYHGDHSRKKNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS  DNRPL FEE+       I VSATPG +EL      IVEQ+IRPTGL+DP V
Sbjct: 362 YGFRLPSAFDNRPLTFEEFLESVGQIIFVSATPGDYEL-SVSTQIVEQLIRPTGLIDPEV 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            ++  + QV+D  +E+    ++G R L+TVLTK+ AE  + YL E  IR  Y+HSE+ T+
Sbjct: 421 VVKPTQNQVDDFIEEVQKVIERGERALVTVLTKKAAEMFSAYLNELGIRAEYLHSELDTV 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+E+++ LR G  DV+VG+NLLREGLD+PE  LVAI+DADKEGFLRS+T+LIQTIGRAA
Sbjct: 481 ERVEVLKKLREGSVDVVVGVNLLREGLDLPEVSLVAIMDADKEGFLRSETTLIQTIGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N KV+LYAD IT S++ AI+ET RRR KQL +N +H+I P+S+ + + E I     +
Sbjct: 541 RNINGKVLLYADRITNSMKRAIEETNRRRMKQLMYNIEHDIKPESIVKPLYENIFEEFAD 600

Query: 740 DAATTNIS----IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +     I+    +D         + + +L  L ++M  A+  L +E+AA +RDE+ R+K
Sbjct: 601 NEEKIEIAKNTYLDGILALKEDLEAEEYLALLEEEMWRASSELRYEDAAMLRDEMLRIK 659


>gi|327312372|ref|YP_004327809.1| excinuclease ABC subunit B [Prevotella denticola F0289]
 gi|326944025|gb|AEA19910.1| excinuclease ABC, B subunit [Prevotella denticola F0289]
          Length = 681

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 324/681 (47%), Positives = 464/681 (68%), Gaps = 35/681 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L  G+   +K Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FKLTSKYRPTGDQPEAIRELTDGLERGDKSQVLLGVTGSGKTFTVANVIANVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKAFFPDNAVEYYVSYYDYYQPEAYMPTTDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  SLL  R D IVVSSVSCIYG+G+  +  + ++ ++ G +V++ + L  LV   Y R
Sbjct: 123 SAVSSLLSGRKDVIVVSSVSCIYGMGAPVAMKENVIPVRKGQTVDRNDFLRRLVDALYMR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++ ++V  R++ + ++I+ I E   +   +I + +  +I
Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYNDNV-LRITWWDDEIDTIEEVDSVDFHRIASFDDYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  ++   +  G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTENAIRQIQDDLVKQVDFFKGIGDNIKAQRIKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G+ P  L ++ P+D L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRQAGQRPYCLLDFFPKDYLMVIDESHVSVPQISAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE++ L    I VSATP  +EL++ +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLRFEEFHSLIHQVIYVSATPADYELKEAEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI + A++  R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V  L
Sbjct: 422 EVRPSENQIDDLMNEIVVRAEKEERVLVTTLTKRMAEELTEYLLNHDIRTAYIHSDVAGL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +RI II DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRIAIINDLRAGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++ KVI+YAD IT+S+Q  IDET RRR KQL++N++H+I P+ +   I   +      
Sbjct: 542 RNIHGKVIMYADNITESMQKTIDETIRRRTKQLKYNEEHHITPKQIVRAIKGTL------ 595

Query: 740 DAATTNISIDAQQLSLSKKKGKAHL---------------KSLRKQ-----------MHL 773
             A +  +  +Q  S+++K G+A++               K  R Q           M  
Sbjct: 596 -PAGSEGNTTSQTASIARKTGQAYVEPDNGMLFAADPVITKMNRAQLVKSIENTTALMKQ 654

Query: 774 AADNLNFEEAARIRDEIKRLK 794
           AA +L+F +AA+ RDEI RL+
Sbjct: 655 AAKDLDFLQAAQYRDEIIRLQ 675


>gi|303237176|ref|ZP_07323746.1| excinuclease ABC, B subunit [Prevotella disiens FB035-09AN]
 gi|302482563|gb|EFL45588.1| excinuclease ABC, B subunit [Prevotella disiens FB035-09AN]
          Length = 680

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 323/673 (47%), Positives = 467/673 (69%), Gaps = 19/673 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL +GI   +K Q+LLGVTGSGKTFTMA VI  + +P ++++
Sbjct: 3   FELTSKYKPTGDQPEAIRQLTEGIERGDKSQVLLGVTGSGKTFTMANVIANVGKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPHNAVEYYVSYYDYYQPEAYMPTTDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  SLL  R D +VVSSVSC+YG+G   +    +++LK G  +++ E L  L+   Y R
Sbjct: 123 SAVSSLLSGRKDVVVVSSVSCLYGMGGPVAMKDSVIRLKKGQIIDRNEFLRRLINALYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++ +++  R++ + ++I+ I E   ++  ++   E  +I
Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYSDNI-LRITWWDDEIDAIEEVDAVSYHRLGTFEAYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L++++    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTTKEQTEGAIRQIQDDLRLQIDFFNEIGDNIKAQRIKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G+ P  L ++ P D+L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGREAGQRPYCLLDFFPSDNLIMIDESHVSVPQISAMYGGDRARKKNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLP+  DNRPLRFEE++ L    I VSATP ++ELE+ +G++VEQ+IRPTGL+DP +
Sbjct: 362 FGFRLPAAFDNRPLRFEEFHSLINQIIYVSATPANFELEEAEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++++ +EI + A++  R+L+T LTKRMAE+LTEYL    +R  Y+HS+V +L
Sbjct: 422 EVRPSENQIDNLMEEILIRAEKDERVLVTTLTKRMAEELTEYLLNHEVRTTYIHSDVASL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++II D R+G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIINDFRIGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME-------- 731
           RNVN +VI+YAD IT S+Q  IDET RRREKQL++N++++I P  +   I +        
Sbjct: 542 RNVNGRVIMYADKITDSMQKTIDETARRREKQLKYNEENHITPTQIVRTIKDTLPSSENS 601

Query: 732 -VIDPI--------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
             I PI          E    T+I  D   + ++K + +  +++    M  AA NL+F +
Sbjct: 602 ATIVPINKGKAPQAYSEPTFETSIVADPIVMKMTKAQLEKSIQNTTLLMQEAAKNLDFLQ 661

Query: 783 AARIRDEIKRLKS 795
           AA+ RDEI RL++
Sbjct: 662 AAQYRDEILRLQA 674


>gi|288803851|ref|ZP_06409277.1| excinuclease ABC subunit B [Prevotella melaninogenica D18]
 gi|288333685|gb|EFC72134.1| excinuclease ABC subunit B [Prevotella melaninogenica D18]
          Length = 681

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 326/681 (47%), Positives = 464/681 (68%), Gaps = 35/681 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L  G+   +K Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FKLTSKYKPTGDQPEAIRELTDGLERGDKSQVLLGVTGSGKTFTVANVIANVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKAFFPDNAVEYYVSYYDYYQPEAYMPVTDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  SLL  R D IVVSSVSCIYG+G+  +  + ++ +K G  +++ + L  LV   Y R
Sbjct: 123 SAVSSLLSGRKDVIVVSSVSCIYGMGAPIAMKENVISIKKGQVIDRNDFLRRLVDALYMR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++ ++V  R++ + ++I+ I E   +   ++   +  ++
Sbjct: 183 NDIELQRGNFRVKGDTVDIAMAYNDNV-LRITWWDDEIDSIEEVDAVDFHRLATFDAYEV 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  ++    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTEGAIRQIQDDLVKQVDFFTEIGDNIKAQRIKERVEYDIEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ PED L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGREAGMRPYCLLDFFPEDYLMVIDESHVSVPQISAMYGGDRARKKNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE++ L    I VSATP  +EL + +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLRFEEFHDLIHQIIYVSATPADFELAESEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI + A++  R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V +L
Sbjct: 422 EVRPSENQIDDLMNEIVIRAEKEERVLVTTLTKRMAEELTEYLLNHDIRTAYIHSDVASL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +RI+II DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRIKIINDLRAGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI+YAD IT+S+Q  IDET RRR KQL++N+++NI P  + + I   + P+   
Sbjct: 542 RNVNGKVIMYADNITESMQKTIDETMRRRTKQLKYNEENNITPTQIVKAIKGTL-PV--- 597

Query: 740 DAATTNISIDAQQLSLSKKKGKAHL-----------------------KSLRKQ---MHL 773
               +N++  AQ  S+S+  G+A++                       KS+      M  
Sbjct: 598 -GGESNLT--AQTASISRNVGQAYVEPNNGVLFAADPIVAKMSKAQLEKSIANTTILMKQ 654

Query: 774 AADNLNFEEAARIRDEIKRLK 794
           AA +L+F +AA+ RDEI RL+
Sbjct: 655 AAKDLDFLQAAQYRDEIIRLQ 675


>gi|212693421|ref|ZP_03301549.1| hypothetical protein BACDOR_02937 [Bacteroides dorei DSM 17855]
 gi|212664065|gb|EEB24639.1| hypothetical protein BACDOR_02937 [Bacteroides dorei DSM 17855]
          Length = 677

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 326/668 (48%), Positives = 462/668 (69%), Gaps = 15/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AIAQL +G+  R   Q LLGVTGSGKTFT+A VI+ + +P ++++
Sbjct: 3   FELISEYQPTGDQPEAIAQLTEGVLERVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYGEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   +   ++++K G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++  D   RV  + ++I+ I E  P++G ++   +  KI
Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAY-SDNLLRVMFWDDEIDAIEEIDPVSGIRLATFDEYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T + +   A+  I+++L   + + E+EG++ EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKESQLRAIHQIEDDLTKEVAKFEEEGKMYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GRN G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRNAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFR+ S  DNRPL+FEE+  L    I VSATP  +EL + +GIIVEQ+IRPTGL+DP +
Sbjct: 362 YGFRMESAFDNRPLKFEEFKELAKQVIYVSATPADYELVESEGIIVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI    ++  R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQQRIEKEERVLVTTLTKRMAEELTEYLLRNDIRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ +LR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDELRQGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV-KEKIMEVIDPILL 738
           RN+N KVI+YAD +T S++  IDET RRREKQL +N++H I P+ + + +   ++     
Sbjct: 542 RNINGKVIMYADRMTDSMKKTIDETNRRREKQLAYNEEHGITPKQIQRARNAALLGNNSN 601

Query: 739 EDAATT------------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           E A TT             ++ D     ++K + +  ++  RK M  AA  L F EAA+ 
Sbjct: 602 EAAGTTQGSKAYIEPSSNTMAADPIVQYMTKPQMEKTIERTRKLMQEAAKKLEFIEAAQY 661

Query: 787 RDEIKRLK 794
           RDE+ +L+
Sbjct: 662 RDELLKLE 669


>gi|325270752|ref|ZP_08137343.1| excision endonuclease subunit UvrB [Prevotella multiformis DSM
           16608]
 gi|324986868|gb|EGC18860.1| excision endonuclease subunit UvrB [Prevotella multiformis DSM
           16608]
          Length = 696

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 318/674 (47%), Positives = 462/674 (68%), Gaps = 21/674 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L  G+   +K Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 18  FKLTSKYRPTGDQPEAIRELTDGLERGDKSQVLLGVTGSGKTFTVANVIADVNKPTLILS 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 78  HNKTLAAQLYEEMKGFFPDNAVEYYVSYYDYYQPEAYMPTTDTYIEKDLAINDEIDKLRL 137

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  SLL  R D IVVSSVSCIYG+G+  +  + ++ ++ G +V++ + L  LV   Y R
Sbjct: 138 SAVSSLLSGRKDVIVVSSVSCIYGMGAPVAMKENVIPVRKGQTVDRNDFLRRLVDALYMR 197

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++ ++V  R++ + ++I+ I E   +   +I + +  +I
Sbjct: 198 NDIDLQRGNFRVKGDTVDIAMAYNDNV-LRITWWDDEIDTIEEVDSVDFHRIASFDDYEI 256

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +    +A++ I+++L  ++   +  G  ++AQR+++R+ YD+EM++  G C
Sbjct: 257 YPANLFVTSKEQTESAIRQIQDDLVKQVDFFKGIGDNIKAQRIKERVEYDMEMIKELGHC 316

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G+ P  L ++ P+D L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 317 SGIENYSRYFDGRQAGQRPYCLLDFFPKDYLMVIDESHVSVPQISAMYGGDRARKTNLVE 376

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE++ L    I VSATP  +EL++ +G++VEQ+IRPTGL+DP +
Sbjct: 377 YGFRLPAAFDNRPLRFEEFHSLIHQVIYVSATPADYELKESEGVVVEQLIRPTGLLDPEI 436

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ +EI + A++  R+L+T LTKRMAE+LTEYL + +IR  Y+HS+V +L
Sbjct: 437 DVRPSENQIDDLMNEIVVRAEKEERVLVTTLTKRMAEELTEYLLDHDIRTAYIHSDVASL 496

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++II DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 497 DRVKIINDLRAGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 556

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP---- 735
           RNV+ KVI+YAD IT+S+Q  IDET RRR KQL++N++H+I P+ +   I   +      
Sbjct: 557 RNVHGKVIMYADNITESMQKTIDETIRRRTKQLKYNEEHHITPKQIVRAIKGTLPTGGEG 616

Query: 736 ---------------ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
                            +E       + D     +S+ + +  +++    M  AA NL+F
Sbjct: 617 NAAAPADSAARRTARAYVEPGDGMLFAADPVIAKMSRAQLEKSIENTTALMKQAAKNLDF 676

Query: 781 EEAARIRDEIKRLK 794
            +AA+ RDEI RL+
Sbjct: 677 LQAAQYRDEIIRLQ 690


>gi|148270182|ref|YP_001244642.1| excinuclease ABC subunit B [Thermotoga petrophila RKU-1]
 gi|170288855|ref|YP_001739093.1| excinuclease ABC, B subunit [Thermotoga sp. RQ2]
 gi|281412475|ref|YP_003346554.1| excinuclease ABC, B subunit [Thermotoga naphthophila RKU-10]
 gi|189038009|sp|A5ILJ3|UVRB_THEP1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238688838|sp|B1LAR2|UVRB_THESQ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|147735726|gb|ABQ47066.1| Excinuclease ABC subunit B [Thermotoga petrophila RKU-1]
 gi|170176358|gb|ACB09410.1| excinuclease ABC, B subunit [Thermotoga sp. RQ2]
 gi|281373578|gb|ADA67140.1| excinuclease ABC, B subunit [Thermotoga naphthophila RKU-10]
          Length = 664

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 324/659 (49%), Positives = 455/659 (69%), Gaps = 10/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L++G++   + Q LLGVTGSGKTFTMA VI  + RPA+V++
Sbjct: 2   FKLVSEFEPTGDQPQAIEKLVEGLNRGMRFQTLLGVTGSGKTFTMANVIARVNRPALVIS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP N VE+F+SYYDYYQPEAY+P  D YIEK + IN+ I RMR 
Sbjct: 62  PNKTLAAQLYQEFKAFFPENRVEFFISYYDYYQPEAYIPTKDLYIEKNADINDVIVRMRM 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S  +S+  R D +VV+SVSCIY  G    + +M + L +GD ++  EL   L +  Y+R 
Sbjct: 122 STLKSVRTRRDVVVVASVSCIYATGDPNDFDRMNINLAVGDRIDVLELAERLARIGYQRT 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +   + G FR+ GD++EI+P++ +D   R+  FG++++ I+         + +++ I IY
Sbjct: 182 EDVSLSGCFRLKGDTVEIYPTY-QDEGIRIEFFGDEVDSITLIDRFNRTTLEHLDKIIIY 240

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               ++T    L  A++ I+EEL  RL EL+K+G++LE +RL+QR   D+E+LET G C 
Sbjct: 241 PAVEFITTEEKLKRAVESIREELNERLSELKKQGKILEYERLKQRTLNDIELLETMGYCP 300

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GR PGEPP TL +Y  +D ++F+DESH+T+PQ+  MY GD  RK  L EY
Sbjct: 301 GIENYSRHFDGRKPGEPPYTLLDYFDKDFIVFIDESHITVPQLRAMYNGDRSRKKNLVEY 360

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I VSATPG +EL   + + VEQIIRPTGLVDP VE
Sbjct: 361 GFRLPSAYDNRPLTFEEFLKKTGQIIFVSATPGDFELSISEQV-VEQIIRPTGLVDPEVE 419

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+ +EI    ++G R L+TVLTK+ AE L+E+L E  IR  Y+HSE+  +E
Sbjct: 420 VRPTAGQVDDLVNEIVKVKERGERALVTVLTKKTAELLSEHLTELGIRSLYLHSELDAIE 479

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E+++ LR G  DV+VG+NLLREGLD+PE  LVAI+DAD EGFLRS+T+LIQ IGR AR
Sbjct: 480 RVEVLKKLRRGDVDVVVGVNLLREGLDLPEVSLVAIMDADVEGFLRSETTLIQIIGRTAR 539

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-MEVIDPILL- 738
           N+N KVI+YAD IT +++ AI+ET RRR  QLE+NKKH I P+SV + + +EV +  ++ 
Sbjct: 540 NINGKVIMYADRITNAMKRAIEETNRRRRIQLEYNKKHGITPRSVIKPLEIEVFEQFMVK 599

Query: 739 ---EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              E    T  +I   + +LS ++   ++  L ++M+ AA  L +E+AA +RDE+ R++
Sbjct: 600 EEPERYGDTVKNIFEMKKTLSPEE---YMAVLEEEMYRAASELRYEDAAALRDELFRIR 655


>gi|302346857|ref|YP_003815155.1| excinuclease ABC, B subunit [Prevotella melaninogenica ATCC 25845]
 gi|302150443|gb|ADK96704.1| excinuclease ABC, B subunit [Prevotella melaninogenica ATCC 25845]
          Length = 681

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 329/675 (48%), Positives = 460/675 (68%), Gaps = 23/675 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L  G+   +K Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FKLTSKYKPTGDQPEAIRELTDGLERGDKSQVLLGVTGSGKTFTVANVIANVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKAFFPDNAVEYYVSYYDYYQPEAYMPVTDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  SLL  R D IVVSSVSCIYG+G+  +    ++ +K G  +++ + L  LV   Y R
Sbjct: 123 SAVSSLLSGRKDVIVVSSVSCIYGMGAPIAMKGNVISIKKGQVIDRNDFLRRLVDALYMR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++ ++V  R++ + ++I+ I E   +   ++   +  +I
Sbjct: 183 NDIELQRGNFRVKGDTVDIAMAYNDNV-LRITWWDDEIDSIEEVDAVDFHRLATFDAYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  ++    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTEGAIRQIQDDLVKQVDFFTEIGDNIKAQRIKERVEYDIEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ PED L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGREAGMRPYCLLDFFPEDYLMVIDESHVSVPQISAMYGGDRARKKNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE++ L    I VSATP  +EL + +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLRFEEFHDLIHQIIYVSATPADFELAESEGVVVEQVIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI + A++  R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V +L
Sbjct: 422 EVRPSENQIDDLMNEIVIRAEKEERVLVTTLTKRMAEELTEYLLNHDIRTAYIHSDVASL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +RI+II DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRIKIINDLRAGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI+YAD IT+S+Q  IDET RRR KQL++N+++NI P  + + I   + P+  E
Sbjct: 542 RNVNGKVIMYADNITESMQKTIDETMRRRTKQLKYNEENNITPTQIVKAIKGTL-PVGGE 600

Query: 740 D---AATTNISIDAQQLSLSKKKG-------------KAHL-KSLRKQ---MHLAADNLN 779
               A T +I  +  Q  +    G             KA L KS+      M  AA +L+
Sbjct: 601 SNLTAETASIGRNVGQAYVEPNNGVLFAADPIVAKMSKAQLEKSIANTTILMKQAAKDLD 660

Query: 780 FEEAARIRDEIKRLK 794
           F +AA+ RDEI RL+
Sbjct: 661 FLQAAQYRDEIIRLQ 675


>gi|15644506|ref|NP_229558.1| excinuclease ABC subunit B [Thermotoga maritima MSB8]
 gi|8134790|sp|Q9X282|UVRB_THEMA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|4982339|gb|AAD36825.1|AE001814_7 excinuclease ABC, subunit B [Thermotoga maritima MSB8]
          Length = 664

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 324/659 (49%), Positives = 455/659 (69%), Gaps = 10/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L++G++   + Q LLGVTGSGKTFTMA VI  + RPA+V++
Sbjct: 2   FKLVSEFEPTGDQPQAIEKLVEGLNRGMRFQTLLGVTGSGKTFTMANVIARVNRPALVIS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP N VE+F+SYYDYYQPEAY+P  D YIEK + IN+ I RMR 
Sbjct: 62  PNKTLAAQLYQEFKTFFPENRVEFFISYYDYYQPEAYIPTKDLYIEKNADINDVIVRMRM 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S  +S+  R D +VV+SVSCIY  G    + +M + L +GD ++  EL   L +  Y+R 
Sbjct: 122 STLKSVRTRRDVVVVASVSCIYATGDPNDFDRMNINLAVGDRIDVLELAERLARIGYQRT 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +   + G FR+ GD++EI+P++ +D   R+  FG++++ I+         + +++ I IY
Sbjct: 182 EDVSLSGCFRLKGDTVEIYPTY-QDEGIRIEFFGDEVDSITLIDRFNRTTLEHLDKIIIY 240

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               ++T    L  A++ I+EEL  RL EL+K+G++LE +RL+QR   D+E+LET G C 
Sbjct: 241 PAVEFITTEEKLKRAVESIREELNERLSELKKQGKILEYERLKQRTLNDIELLETMGYCP 300

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GR PGEPP TL +Y  +D ++F+DESH+T+PQ+  MY GD  RK  L EY
Sbjct: 301 GIENYSRHFDGRKPGEPPYTLLDYFDKDFIVFIDESHITVPQLRAMYNGDRSRKKNLVEY 360

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I VSATPG +EL   + + VEQIIRPTGLVDP VE
Sbjct: 361 GFRLPSAYDNRPLTFEEFLKKTGQIIFVSATPGDFELSISEQV-VEQIIRPTGLVDPEVE 419

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+ +EI    ++G R L+TVLTK+ AE L+E+L E  IR  Y+HSE+  +E
Sbjct: 420 VRPTAGQVDDLVNEIVKVKERGERALVTVLTKKTAELLSEHLTELGIRSLYLHSELDAIE 479

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E+++ LR G  DV+VG+NLLREGLD+PE  LVAI+DAD EGFLRS+T+LIQ IGR AR
Sbjct: 480 RVEVLKKLRRGDVDVVVGVNLLREGLDLPEVSLVAIMDADVEGFLRSETTLIQIIGRTAR 539

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-MEVIDPILL- 738
           NVN KVI+YAD IT +++ AI+ET RRR  QLE+N+KH I P+SV + + +EV +  ++ 
Sbjct: 540 NVNGKVIMYADRITNAMKRAIEETNRRRRIQLEYNRKHGITPRSVIKPLEIEVFEQFMVK 599

Query: 739 ---EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              E    T  +I   + +LS ++   ++  L ++M+ AA  L +E+AA +RDE+ R++
Sbjct: 600 EEPERYGDTVKNIFEMKKTLSPEE---YMAVLEEEMYRAASELRYEDAAALRDELFRIR 655


>gi|282856668|ref|ZP_06265936.1| excinuclease ABC, B subunit [Pyramidobacter piscolens W5455]
 gi|282585517|gb|EFB90817.1| excinuclease ABC, B subunit [Pyramidobacter piscolens W5455]
          Length = 683

 Score =  612 bits (1578), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 314/666 (47%), Positives = 437/666 (65%), Gaps = 18/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + PSGDQP AI  LL+G+   EK   L+GVTGSGKTFT+A V+    RP +V+A
Sbjct: 6   FKLHAPWPPSGDQPQAIESLLEGLERGEKCSTLMGVTGSGKTFTVANVVAKYDRPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+SEFK FFP NAV Y+VSYYDYYQPEAY+P +DT+IEK++SIN QI+RMR 
Sbjct: 66  HNKTLAAQLFSEFKRFFPENAVHYYVSYYDYYQPEAYIPSSDTFIEKDASINTQIERMRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T+SL+ER D IVV+SVSCIYG+G  ++Y   IV   +G+   ++    +L+K  Y+R 
Sbjct: 126 ATTKSLIERRDVIVVASVSCIYGMGKRKNYEDAIVNFSVGERWNRRSFQEALMKAYYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  +  G +RV GD +E++P +  D   R S F  ++E I E  P++G+     + + ++
Sbjct: 186 DFDLQPGKYRVRGDVLEVYPVY-SDATLRFSFFDEELESIEEVDPVSGRSTARKQHVSVF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HYVT    +  +M  IK E+++++   + EG+ LEA+RL  R  YD+EML   G C 
Sbjct: 245 PAQHYVTSDGAIAESMDKIKREMELQVGRFKSEGKYLEAERLGSRTRYDMEMLAEAGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL GR  GE P TL ++ P D L+ VDESH+T+PQ+ GM+ GD  RK  L E+
Sbjct: 305 GIENYSRYLDGRAEGEQPGTLIDFFPPDFLMIVDESHITLPQVRGMFNGDRARKEVLVEH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPL++ E+       +  SATPG WEL   +  +VEQ+IRPTG+ DP VE
Sbjct: 365 GFRLPSCLDNRPLKWHEFERYMQRVVCCSATPGDWELAHSRR-VVEQLIRPTGIADPEVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  Q++D+  EI      G R L+T LTK+ AE+L  Y+    ++  Y+HSE+   E
Sbjct: 424 VRKATGQIDDLLAEIQKVRGAGGRCLVTTLTKKGAEELAGYMRTLRVKSEYIHSELNAFE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E I  LR G  +VL+G+NLLREG+D+PE  LVAILDAD+EGFLRS  SL+Q +GRAAR
Sbjct: 484 RAEEINHLRSGDIEVLIGVNLLREGIDMPEVTLVAILDADREGFLRSYRSLVQVMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+S+VILYAD +T SI+ A+ E+ RRRE QL++N++H+I PQ++ + I  ++  +  E 
Sbjct: 544 NVDSRVILYADEVTDSIREAVGESKRRREAQLKYNEEHHIVPQTIHKSIERMLPEVEFEA 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHL-----KSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A                K+ + H+     ++L K M  A + L FE+AA+IRD I+ ++ 
Sbjct: 604 APEAK-----------NKRAQQHIEHMDNEALEKLMWEAVEKLQFEKAAKIRDMIQAMEE 652

Query: 796 SPYFQG 801
               QG
Sbjct: 653 GRTPQG 658


>gi|265756510|ref|ZP_06090716.1| excinuclease ABC, B subunit [Bacteroides sp. 3_1_33FAA]
 gi|263233698|gb|EEZ19313.1| excinuclease ABC, B subunit [Bacteroides sp. 3_1_33FAA]
          Length = 677

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 325/668 (48%), Positives = 461/668 (69%), Gaps = 15/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI+ + +P ++++
Sbjct: 3   FELISEYQPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYGEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   +   ++++K G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++  D   RV  + ++I+ I E  P++G ++   +  KI
Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAY-SDNLLRVMFWDDEIDAIEEIDPVSGIRLATFDEYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T + +   A+  I+++L   + + E+EG++ EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKESQLRAIHQIEDDLTKEVAKFEEEGKMYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GRN G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRNAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFR+ S  DNRPL+FEE+  L    I VSATP  +EL + +GIIVEQ+IRPTGL+DP +
Sbjct: 362 YGFRMESAFDNRPLKFEEFKELAKQVIYVSATPADYELVESEGIIVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI    ++  R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQQRIEKEERVLVTTLTKRMAEELTEYLLHNDIRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ +LR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDELRQGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV-KEKIMEVIDPILL 738
           RN+N KVI+YAD +T S++  IDET RRREKQL +N++H I P+ + + +   ++     
Sbjct: 542 RNINGKVIMYADRMTDSMKKTIDETNRRREKQLAYNEEHGITPKQIQRARNAALLGNNSN 601

Query: 739 EDAATT------------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           E A TT             ++ D     ++K + +  ++  RK M  AA  L F EAA+ 
Sbjct: 602 EAAGTTQGSKAYIEPSSNTMAADPIVQYMTKPQMEKTIERTRKLMQEAAKKLEFIEAAQY 661

Query: 787 RDEIKRLK 794
           RDE+ +L+
Sbjct: 662 RDELLKLE 669


>gi|237726985|ref|ZP_04557466.1| excinuclease ABC subunit B [Bacteroides sp. D4]
 gi|229433841|gb|EEO43918.1| excinuclease ABC subunit B [Bacteroides dorei 5_1_36/D4]
          Length = 677

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 325/668 (48%), Positives = 461/668 (69%), Gaps = 15/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI+ + +P ++++
Sbjct: 3   FELISEYQPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYGEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   +   ++++K G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++  D   RV  + ++I+ I E  P++G ++   +  KI
Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAY-SDNLLRVMFWDDEIDAIEEIDPVSGIRLATFDEYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T + +   A+  I+++L   + + E+EG++ EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKESQLRAIHQIEDDLTKEVAKFEEEGKMYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GRN G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRNAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFR+ S  DNRPL+FEE+  L    I VSATP  +EL + +GIIVEQ+IRPTGL+DP +
Sbjct: 362 YGFRMESAFDNRPLKFEEFKELAKQVIYVSATPADYELVESEGIIVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI    ++  R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQQRIEKEERVLVTTLTKRMAEELTEYLLRNDIRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ +LR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDELRQGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV-KEKIMEVIDPILL 738
           RN+N KVI+YAD +T S++  IDET RRREKQL +N++H I P+ + + +   ++     
Sbjct: 542 RNINGKVIMYADRMTDSMKKTIDETNRRREKQLAYNEEHGITPKQIQRARNAALLGNNSN 601

Query: 739 EDAATT------------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           E A TT             ++ D     ++K + +  ++  RK M  AA  L F EAA+ 
Sbjct: 602 EAAGTTQGSKAYIEPSSNTMAADPIVQYMTKPQMEKTIERTRKLMQEAAKKLEFIEAAQY 661

Query: 787 RDEIKRLK 794
           RDE+ +L+
Sbjct: 662 RDELLKLE 669


>gi|289757735|ref|ZP_06517113.1| excinuclease ABC subunit B [Mycobacterium tuberculosis T85]
 gi|289713299|gb|EFD77311.1| excinuclease ABC subunit B [Mycobacterium tuberculosis T85]
          Length = 535

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 302/530 (56%), Positives = 391/530 (73%), Gaps = 1/530 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 7   FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 67  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  +
Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSAAA 535


>gi|150005555|ref|YP_001300299.1| excinuclease ABC subunit B [Bacteroides vulgatus ATCC 8482]
 gi|254884531|ref|ZP_05257241.1| excinuclease ABC subunit B [Bacteroides sp. 4_3_47FAA]
 gi|294778638|ref|ZP_06744060.1| excinuclease ABC, B subunit [Bacteroides vulgatus PC510]
 gi|319640777|ref|ZP_07995490.1| UvrABC SOS-repair system protein B [Bacteroides sp. 3_1_40A]
 gi|149933979|gb|ABR40677.1| UvrABC SOS-repair system protein B [Bacteroides vulgatus ATCC 8482]
 gi|254837324|gb|EET17633.1| excinuclease ABC subunit B [Bacteroides sp. 4_3_47FAA]
 gi|294447587|gb|EFG16165.1| excinuclease ABC, B subunit [Bacteroides vulgatus PC510]
 gi|317387589|gb|EFV68455.1| UvrABC SOS-repair system protein B [Bacteroides sp. 3_1_40A]
          Length = 677

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 323/668 (48%), Positives = 458/668 (68%), Gaps = 15/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI+ + +P ++++
Sbjct: 3   FELISEYQPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYGEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   +   ++++K G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++  D   RV  + ++I+ I E  P++G ++   +  KI
Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAY-SDNLLRVMFWDDEIDAIEEIDPISGIRLATFDEYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T + +   A+  I+++L   + + E+EG++ EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKESQLRAIHQIEDDLTKEVAKFEEEGKMYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GRN G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRNAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFR+ S  DNRPL+FEE+  L    I VSATP  +EL + +GIIVEQ+IRPTGL+DP +
Sbjct: 362 YGFRMESAFDNRPLKFEEFKELAKQVIYVSATPADYELVESEGIIVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI    ++  R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQQRIEKEERVLVTTLTKRMAEELTEYLLRNDIRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ +LR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDELRQGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK------------- 726
           RN+N KVI+YAD +T S++  IDET RRREKQL +N++H I P+ ++             
Sbjct: 542 RNINGKVIMYADRMTDSMKKTIDETNRRREKQLAYNEEHGITPKQIQRARNAALLGNNSN 601

Query: 727 EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           E       P    + ++   + D     ++K + +  ++  RK M  AA  L F EAA+ 
Sbjct: 602 EVAGTTQGPKAYIEPSSDTTAADPIVQYMTKPQMEKTIERTRKLMQEAAKKLEFIEAAQY 661

Query: 787 RDEIKRLK 794
           RDE+ +L+
Sbjct: 662 RDELLKLE 669


>gi|237710478|ref|ZP_04540959.1| excinuclease ABC subunit B [Bacteroides sp. 9_1_42FAA]
 gi|229455200|gb|EEO60921.1| excinuclease ABC subunit B [Bacteroides sp. 9_1_42FAA]
          Length = 677

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 322/668 (48%), Positives = 459/668 (68%), Gaps = 15/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI+ + +P ++++
Sbjct: 3   FELISEYQPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYGEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   +   ++++K G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++  D   RV  + ++I+ I E  P++G ++   +  KI
Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAY-SDNLLRVMFWDDEIDAIEEIDPVSGIRLATFDEYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T + +   A+  I+++L   + + E+EG++ EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKESQLRAIHQIEDDLTKEVAKFEEEGKMYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GRN G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRNAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFR+ S  DNRPL+FEE+  L    I VSATP  +EL + +GIIVEQ+IRPTGL+DP +
Sbjct: 362 YGFRMESAFDNRPLKFEEFKELAKQVIYVSATPADYELVESEGIIVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI    ++  R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQQRIEKEERVLVTTLTKRMAEELTEYLLRNDIRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ +LR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDELRQGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK------------- 726
           RN+N KVI+YAD +T S++  IDET RRREKQL +N++H I P+ ++             
Sbjct: 542 RNINGKVIMYADRMTDSMKKTIDETNRRREKQLAYNEEHGITPKQIQRARNAALLGNNSN 601

Query: 727 EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           E +          + ++  ++ D     ++K + +  ++  RK M  AA  L F EAA+ 
Sbjct: 602 EAVGTTQGSKAYIEPSSNTMAADPIVQYMTKPQMEKTIERTRKLMQEAAKKLEFIEAAQY 661

Query: 787 RDEIKRLK 794
           RDE+ +L+
Sbjct: 662 RDELLKLE 669


>gi|187736045|ref|YP_001878157.1| excinuclease ABC, B subunit [Akkermansia muciniphila ATCC BAA-835]
 gi|187426097|gb|ACD05376.1| excinuclease ABC, B subunit [Akkermansia muciniphila ATCC BAA-835]
          Length = 715

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 315/710 (44%), Positives = 446/710 (62%), Gaps = 60/710 (8%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQ  AI +LLK + +  K Q LLGVTGSGKTFTMA +I  M RP +V++
Sbjct: 4   FELNSSFKPSGDQEQAIGKLLKSLEAGNKHQGLLGVTGSGKTFTMANLIARMNRPTLVIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+SE K+FFP+NAV+Y+VSY+DYYQPEAY+  +DTYIEK+S+IN+++DR+  
Sbjct: 64  HNKTLAAQLHSELKSFFPNNAVDYYVSYFDYYQPEAYIASSDTYIEKDSAINDELDRLSL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +A  SL+ R D IVV+SVSCIYG+ + E Y  + ++++ GD +++   L  LV++ ++RQ
Sbjct: 124 NAMNSLMTRRDVIVVASVSCIYGLSTPEDYRNLTLRMREGDVMDRDVFLKHLVERLFERQ 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ +E+FP++ E  A RV  FG+++E +S     TG+    + +   +
Sbjct: 184 DFDFTRGTFRVRGEVVEVFPAYSEGEAIRVEFFGDEVERVSLIDSATGRVRERLGSYTFF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               YV        A+K I+EEL+ R+   EK GRLLEAQRL+ R  YDLE++E  G C+
Sbjct: 244 PAKQYVAAPEKRAAALKAIREELEDRVGWFEKHGRLLEAQRLKLRTDYDLELIEELGFCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PG  P TL ++ P+DSL  +DESHV +PQ+ GMY GD  RK  L E+
Sbjct: 304 GIENYSRHLSGRLPGSAPSTLLDFFPKDSLTLIDESHVAVPQLGGMYEGDRSRKNILVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-------------------- 540
           GFRLPS +DNRPL+F E+   +   +  SATPG +EL  C                    
Sbjct: 364 GFRLPSALDNRPLKFHEFMERQNQIVYASATPGPFELVNCRADNKTYIPVRRAARSGEKA 423

Query: 541 ----QGII-------------------------------VEQIIRPTGLVDPPVEIRSAR 565
               +GI+                               VEQIIRPTGL++P + IR  +
Sbjct: 424 PEGFKGILFTSPKDIRVAPSPSTEPVEKFDPTRRSTPLIVEQIIRPTGLLEPKITIRPLK 483

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            Q+++     N    +  R+L+T LTK+ AEDLTEYL    ++V Y+H++V  +ER+EI+
Sbjct: 484 GQIDETIAMCNERVAKNERVLVTTLTKKTAEDLTEYLKGVGLKVSYIHADVDAIERVEIL 543

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           R LR  K DVLVGINLLREGLD+PE  LV ILDADKEGFLR++TSL+QT GRAAR++N +
Sbjct: 544 RALRARKIDVLVGINLLREGLDLPEVSLVCILDADKEGFLRNETSLVQTAGRAARHLNGE 603

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN 745
            +L+AD +T SI+  ++ T  RR  Q ++N++H I PQ+V       +     +D  +  
Sbjct: 604 CVLFADVMTDSIKRLVELTDYRRGIQEKYNREHGIVPQTVSRSEQGQLKLYAEDDEESFR 663

Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           ++ D     L ++     +  L  +M  AA +L FE AA IRDEI++++ 
Sbjct: 664 VAEDEAGYGLEER-----IARLETEMKEAASHLEFERAALIRDEIRQMRG 708


>gi|26554342|ref|NP_758276.1| excinuclease ABC subunit B [Mycoplasma penetrans HF-2]
 gi|81846183|sp|Q8EUN2|UVRB_MYCPE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|26454352|dbj|BAC44680.1| excinuclease ABC subunit B [Mycoplasma penetrans HF-2]
          Length = 662

 Score =  608 bits (1569), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 318/663 (47%), Positives = 433/663 (65%), Gaps = 14/663 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           T F +++ + PSGDQP AI +++KG    + K Q+L+G TG+GKTFTMA +I+++    +
Sbjct: 7   TVFDLKSKFKPSGDQPQAIEKIVKGFKEDKFKSQVLVGATGTGKTFTMANIIQSLNCKTL 66

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLYSEFK  FP N VEYFVS +D+YQPEA++P+T+TYIEK S  N  I+ 
Sbjct: 67  VLAHNKTLAAQLYSEFKEMFPDNKVEYFVSAFDFYQPEAFLPKTNTYIEKNSQSNNDIEM 126

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +  SA  SL+ER+D IVV+SV+ IY     + + +  V  K    +  K++   LV   Y
Sbjct: 127 LNLSALNSLIERDDVIVVASVAAIYASSPPDDFFKNRVAYKKNQVIPIKQVQYELVNLNY 186

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+ +  G F V GD +EI P   ++  +R+S FG++IEEI++  PLT Q I  ++ I
Sbjct: 187 QRNDVDVTHGRFSVKGDLMEIGPGFTDEFNYRISFFGDEIEEIAKIDPLTKQVITKLDEI 246

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +     Y+  R TL  ++K IK+EL        K+ +L+EAQR+ +R  +D+E  +  G
Sbjct: 247 VLPGAEVYLANRDTLEESLKRIKDELTETHKNFLKQNKLIEAQRILERTNHDIESFKEFG 306

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L  R  G+ P T+F+Y  +D LL VDESH+ +PQI GMY  D  RK TL
Sbjct: 307 FCPGIENYSRHLELRAQGQTPYTIFDYFDKDWLLIVDESHMMVPQIRGMYNTDRSRKETL 366

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL F E+       + VSATP  WE+E+ Q  I EQIIRPTGLVDP
Sbjct: 367 VEYGFRLPSALDNRPLNFNEFLSKTDKKLYVSATPNEWEIEESQQ-ITEQIIRPTGLVDP 425

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR  + Q+ D+  E+        R  +TV+T R+AE+LTEYL  +NI+V Y+H+E+K
Sbjct: 426 IIEIRPTQDQILDIEQELRKQIANKERTFITVMTIRLAEELTEYLRNKNIKVAYLHNELK 485

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER +I+ +LR G +DV++GINLLREGLD+PE   V ILDADK GF RS  SLIQ IGR
Sbjct: 486 TIERFKILNNLRKGIYDVVIGINLLREGLDVPEVSKVLILDADKPGFFRSDKSLIQIIGR 545

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           A+RNVN KVI+YADTIT+++  AI ET RRR  Q+E NKKHNI P++       VI PI 
Sbjct: 546 ASRNVNGKVIMYADTITEAMDKAIKETERRRNIQIEFNKKHNITPKT-------VIKPIA 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHL----KSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L D +  +  I+  +L    KK K  +    K LR++M  AA N  +E AA IRD I  L
Sbjct: 599 L-DLSKNDADINIDELISKNKKSKEKIDRTVKKLREEMLAAAKNQEYERAAYIRDIIMEL 657

Query: 794 KSS 796
           +++
Sbjct: 658 EAN 660


>gi|47459407|ref|YP_016269.1| excinuclease ABC subunit B [Mycoplasma mobile 163K]
 gi|81614104|sp|Q6KH72|UVRB_MYCMO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|47458737|gb|AAT28058.1| excinuclease ABC helicase subunit B [Mycoplasma mobile 163K]
          Length = 659

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 311/656 (47%), Positives = 434/656 (66%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L++G+   +K Q+LLGVTGSGKTFT+A VI+A  RP ++++
Sbjct: 6   FELVSTYKPTGDQPRAIQELIEGLEQNKKSQVLLGVTGSGKTFTIANVIKAANRPVLLLS 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA+QLYSE K+FFP+N VEYFVSY+DYY+PEAY+P TDTYI+K +  N  ++ MR 
Sbjct: 66  HNKTLASQLYSELKDFFPNNRVEYFVSYFDYYRPEAYMPNTDTYIDKTTKSNWDLEEMRM 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S   S+  + D IVV+SV+ IYG    + Y      + I   + +KE L  LV++ YKR 
Sbjct: 126 STLNSISTKRDTIVVASVASIYGALKPKEYWSAFYNISIAQKISRKEFLLDLVQRGYKRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++    G+F   GD ++I P+  +    RV  FG++IE+IS         I   +   I+
Sbjct: 186 NVASEPGSFNAKGDFVDIIPAWTKGFHIRVEFFGDEIEKISTIDSNNKITIEKFKEYLIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S Y  P  T+  A+  I+EEL  RL   EKEG+LLE QRLE R   DLE LE  G C 
Sbjct: 246 PASAYTAPTGTIEAAVLRIREELHQRLEYFEKEGKLLEKQRLEDRTRNDLESLEEFGFCP 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GE P TLF+Y+P D+LL +DESH+ IPQ++GMY GD  RK  L  Y
Sbjct: 306 GIENYSRHVDGRAEGEQPFTLFDYLPNDALLIIDESHMMIPQLNGMYNGDRARKLNLVNY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+       I +SATP  +E+ Q  G IV+QIIRPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLQFHEFEKYEFQKIYISATPSDYEINQAHGEIVKQIIRPTGLLDPLIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + QVED++DEI     +  R L+   TK+++E+LT Y  E+  +V Y+HS+  T E
Sbjct: 426 IRREQNQVEDMFDEIQKQKAKKQRTLILATTKKVSEELTRYFQEKKEKVAYIHSDYTTFE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+R LR G +D ++GINLLREG+D+PE  L+ +LDA+KE F RSK SLIQ +GRAAR
Sbjct: 486 RNEILRKLRKGVYDTVIGINLLREGIDLPEVSLIMVLDANKESFFRSKKSLIQIVGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +VI YA+ I+KS++  I +   +R+ Q+++NKKHNI P+++ + I E I+   L +
Sbjct: 546 NVNGRVIFYANNISKSMEETIYDNLDKRKIQMDYNKKHNIIPKTIIKPITEAIEDKKLNE 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +  + +S    + S+ +K  +A +K LR QM  A+  LNFE AA +RD I  L+++
Sbjct: 606 SLISFMSHSKTKKSIKEK--EALVKDLRNQMLDASKQLNFERAAELRDIILELEAN 659


>gi|187918690|ref|YP_001884257.1| excinuclease ABC subunit B [Borrelia hermsii DAH]
 gi|119861538|gb|AAX17333.1| excinuclease ABC subunit B [Borrelia hermsii DAH]
          Length = 654

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 312/654 (47%), Positives = 435/654 (66%), Gaps = 6/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P+GDQP AI ++ + I    K Q L GVTGSGKTFT+A +I  ++RP+++++
Sbjct: 3   FCLKSDYSPAGDQPKAIREIKESILLDNKYQTLKGVTGSGKTFTIANIIRDLERPSLIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPE+YVP  D YIEKE++INE I+  R 
Sbjct: 63  HNKTLAAQLYREFKDFFPDNAVEYFVSYYDYYQPESYVPSKDLYIEKEATINEDIEIKRI 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
               SL  R D IVV++VS IY +GS E +        +G  +  KE+    VK QY+R 
Sbjct: 123 RTVTSLSRRRDVIVVATVSSIYALGSPEFFKSAAYAFFVGQKISIKEIADIFVKLQYERT 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLE-DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            + +    F + GD IEI+PS+   D A+R+ +  ++I  I+   PLT + +   +   +
Sbjct: 183 LMNLEHDKFSIKGDLIEIWPSNEHGDFAYRIYLDFDNIIRINRISPLTKKILGITDEFTL 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +A S++V P   +  A+  I+ +L+M+ +  ++ G+L+EA+RL QR+ YD+EML  TGSC
Sbjct: 243 FAKSYFVIPYENILNALPKIQADLEMQYLYFKESGKLVEAERLRQRVEYDIEMLRETGSC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           Q IENYS+Y  G +    P  LF++ P+D LLF+DESHVT+PQ  GMY GD+ RK  L  
Sbjct: 303 QGIENYSKYF-GDSEMNRPYCLFDFFPKDYLLFIDESHVTLPQFRGMYNGDYSRKLNLVN 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS ++NRPL++ E+  L    + VSATPG  E E+   +IVEQIIRPTGLVDP +
Sbjct: 362 FGFRLPSALENRPLKYHEFEALMNQAVFVSATPGLEEREKS-SVIVEQIIRPTGLVDPEI 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            IR +  Q+ED+Y+E+        ++L+T LTK+MAEDLT+YL   +I+ RY+H+E   +
Sbjct: 421 IIRVSDGQMEDLYNEVQKRIALNEKVLITTLTKKMAEDLTDYLLTLDIKARYLHAEFNAI 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++II  LR  + DV+VGINLLREGLDIPE  LV ILDADK GFLRS  SLIQ IGRAA
Sbjct: 481 ERVDIITSLRRSEIDVIVGINLLREGLDIPEVSLVIILDADKVGFLRSTASLIQMIGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VI+Y D ++ ++Q AI+ET RRR+ Q+E+NKK+NI P+++ +K+  +++  L  
Sbjct: 541 RNSNGCVIMYYDQVSSAMQEAIEETNRRRDIQIEYNKKNNIVPKTIIKKVQNILEKELKN 600

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +    NI        LSKK     LK    ++  A  +  FE+A  +RD+IK L
Sbjct: 601 ETVDYNIKRIISDDKLSKKDLIIKLKF---KLEEAVSDERFEDAIFLRDKIKEL 651


>gi|293363472|ref|ZP_06610228.1| excinuclease ABC, B subunit [Mycoplasma alligatoris A21JP2]
 gi|292552821|gb|EFF41575.1| excinuclease ABC, B subunit [Mycoplasma alligatoris A21JP2]
          Length = 657

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 299/652 (45%), Positives = 440/652 (67%), Gaps = 4/652 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ++ +Y PSGDQP AI ++ +GI    K Q+L GVTGSGKTFT+A VI+   RP +
Sbjct: 1   MSIFQLRANYKPSGDQPKAIQEISEGIAEGLKHQVLEGVTGSGKTFTVANVIQNFDRPVL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LA+QLYSE K+FFPHNAVEYFVSY+DYY+PEAY+P +DTYIEK S  N+ I+ 
Sbjct: 61  VLSHNKTLASQLYSELKSFFPHNAVEYFVSYFDYYRPEAYLPTSDTYIEKTSKTNQDIEL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R S   SLL+R D IVV+SVS IYG  +   Y + I+++ +G     K+ L +LVK +Y
Sbjct: 121 LRMSTINSLLKRRDVIVVASVSSIYGALNPNEYQKGILEIFVGLDFVFKDFLRTLVKIKY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI    G+F V GD+I I P+  ED   R+  FG+ IEEIS    +T   I+  +T 
Sbjct: 181 DRNDIDNPPGSFSVKGDTILISPADSEDYLLRIDFFGDTIEEISHVDKITKNVIKTFKTY 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY    Y       +T +  IK+E++ R    ++   LLEAQR+ +R+  D++ +   G
Sbjct: 241 FIYPGEAYTVSNSVFDTILPMIKQEMENREKYFKENNLLLEAQRISERVKNDMDDMAEYG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENY+ YL GRN G+ P TLF+Y+P D++LF+DESH+ IPQ++GMY+GD  RK TL
Sbjct: 301 FCSGIENYTMYLDGRNFGQRPFTLFDYLPSDTILFLDESHMMIPQLNGMYKGDRARKQTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEW-NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
            +YGFRLPS ++NRPL+FEE+ N      I +SATP  +EL++ +G++ +  +RPTGL+D
Sbjct: 361 VDYGFRLPSALENRPLKFEEFENSFDYQRIYISATPNEYELDKSEGLVTKLYVRPTGLLD 420

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EI+  + Q+ED++D+I     +  R ++   TKR AE+L+ Y+  R ++  Y+HS+ 
Sbjct: 421 PILEIKPTKNQIEDIFDQIQGQITKDQRAIILTTTKRSAEELSSYMQTRKVKSAYIHSDY 480

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T +R +I+R LR G +DV++GINLLREG+D+PE  LV +LDADKEGF+R+K+SLIQ  G
Sbjct: 481 DTFKRNDILRKLRKGIYDVVIGINLLREGIDLPEVSLVVVLDADKEGFMRNKSSLIQIAG 540

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN + +VI YAD +TKS++    +   +R  Q+ +NKKHNI PQ++ ++I+E I   
Sbjct: 541 RAARNKDGRVIFYADVLTKSLKECFKDNEYKRNLQIAYNKKHNIIPQTIYKEILEPIQGH 600

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            ++++    +S + +   +SK++    +K ++ QM  AA +L++E A  +RD
Sbjct: 601 EIDNSLELVLSKNKK---ISKQEKDEMIKKIKIQMKQAAKDLDYERAIELRD 649


>gi|270340125|ref|ZP_06007127.2| excision endonuclease subunit UvrB [Prevotella bergensis DSM 17361]
 gi|270332472|gb|EFA43258.1| excision endonuclease subunit UvrB [Prevotella bergensis DSM 17361]
          Length = 685

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 320/673 (47%), Positives = 457/673 (67%), Gaps = 21/673 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIA+L +G+   +  Q+LLGVTGSGKTFT+A VI  + +P +V++
Sbjct: 11  FKLTSQYEPTGDQPQAIARLTEGVLHGDPAQVLLGVTGSGKTFTVANVIANVGKPTLVLS 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAV+Y+VSYYDYYQPEAY+P TD YIEK+ SIN++ID++R 
Sbjct: 71  HNKTLAAQLYEEMKGFFPDNAVDYYVSYYDYYQPEAYLPTTDLYIEKDLSINDEIDKLRL 130

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            A   LL  R D IVVSSVSCIYG+G      Q I+ +K G  +++ E L  LV   Y R
Sbjct: 131 RAVSDLLSGRKDVIVVSSVSCIYGMGGPVGMQQSIISIKRGQRLDRNEFLRRLVNALYTR 190

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ + RG F V GD++ I  ++  D   RV+ + ++I+ I E  P+T + +++    +I
Sbjct: 191 NDVDLQRGFFSVKGDTVNIAMAY-SDHILRVTWWDDEIDSIEEADPVTMRSLQSFAEYQI 249

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  ++   ++ G  ++AQR+++R+ YDLEM++  G C
Sbjct: 250 YPANLFVTSKDQTEIAIRNIQDDLVDQIEFFKEAGDDIKAQRIKERVEYDLEMIKELGHC 309

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PG+ P  L ++ P+D L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 310 SGIENYSRYFDGRQPGQRPYCLLDFFPDDFLIVIDESHVSVPQISAMYGGDRARKRNLVE 369

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE++ +    I VSATP ++EL++ +G++VEQ+IRPTGL+DP +
Sbjct: 370 YGFRLPAAFDNRPLRFEEFHEMAKQVIYVSATPANYELQEAEGVVVEQLIRPTGLLDPEI 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R +  Q++D+  EI +  ++  RIL+T LTKRMAE+LTEYL   ++R  Y+HS+V TL
Sbjct: 430 VVRPSENQIDDLLHEIQIRCERDERILVTTLTKRMAEELTEYLLNNDVRANYIHSDVATL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 490 DRVQIMNDLRAGLYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RNVN KVI+YADTIT+S+Q  IDET RRR  Q+++N  + I P+ + + I   +      
Sbjct: 550 RNVNGKVIMYADTITESMQRTIDETARRRSIQMKYNADNGITPRQIVKDIKGTLPNARGE 609

Query: 734 ----------DPILLE-DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                       + LE D+A    + D   L +++ + +  + + ++ M  AA  L+F +
Sbjct: 610 EYKSAGDMGKQRVYLEPDSAA--FAADPIVLRMTRPELEKSIANTKQLMEQAAKALDFIQ 667

Query: 783 AARIRDEIKRLKS 795
           AA+ RDEI RL++
Sbjct: 668 AAQYRDEILRLQA 680


>gi|315453940|ref|YP_004074210.1| excinuclease ABC subunit B [Helicobacter felis ATCC 49179]
 gi|315132992|emb|CBY83620.1| excinuclease ABC subunit B [Helicobacter felis ATCC 49179]
          Length = 655

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 309/658 (46%), Positives = 436/658 (66%), Gaps = 11/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y  S +Q   +  L +G+    + Q L+GVTGSGKTF+MA +I  +Q P ++M+
Sbjct: 4   FQLHAPYAMSLEQEKVVQTLSEGVEQGARYQTLIGVTGSGKTFSMANLIARLQMPTLIMS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FFP N VEYF+S++DYYQPE+Y+PR D +IEK+SSINE ++R+R 
Sbjct: 64  HNKTLCAQLYSEFKGFFPKNHVEYFISHFDYYQPESYIPRRDLFIEKDSSINEDLERLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  SLL   D IVV+SVS  YG+G+   Y  M+ ++++G     K+ L  LV+  Y RQ
Sbjct: 124 SAVTSLLSYEDVIVVASVSANYGLGNPAEYLSMLEKIQVGQVRPYKQFLLKLVEMGYSRQ 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I + RG FRV G+ ++IFP++ ++   R+  FG++IE I+    L    ++ +++  +Y
Sbjct: 184 EI-LERGKFRVVGECVDIFPAYNDENFIRIEFFGDEIERITSMDALENTPLKQLDSYPLY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A + ++     L  A+K I++EL+ RL   ++  + LE +RL+ R  +DLEM+  TG C+
Sbjct: 243 AANAFIVSPERLQQAIKDIEQELQARLSFFKQAQKPLEYERLKTRTEFDLEMISATGICK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDS---LLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENY+R+ TG+  GE P TL +Y  +     L+ VDESHV++PQ  GMY GD  RK  L
Sbjct: 303 GIENYARHFTGKQEGETPYTLMDYFAQKQRPFLVIVDESHVSLPQFKGMYAGDLSRKQVL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLP  +DNRPL++EE+    P  + VSATP   ELE  QG I +QIIRPTGL+DP
Sbjct: 363 VDYGFRLPCALDNRPLQYEEFITKPPHFLFVSATPNPLELELSQGHIAQQIIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
             E+R    QV D+++ I     +  R+L+T LTKRMAE+L ++  E  +RV+Y+HS++ 
Sbjct: 423 EYEVRPVANQVRDLFESIKEVVSRHERVLVTTLTKRMAEELCKHYLEWGLRVQYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER  +IR+LRLG FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT+GR
Sbjct: 483 AIERNHLIRELRLGVFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-MEVIDPI 736
           AAR+V  KV+ YAD IT S+Q A+  +  RR KQ   N +H I P+SV+  +  E+ID +
Sbjct: 543 AARHVRGKVLFYADKITASMQKAMQISDERRAKQKAFNAEHGIEPKSVQRHVEEELIDSL 602

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             +   +  +        + K +    +K+LR QM   A  L+FEEAAR+RDEI R++
Sbjct: 603 PAKPKRSKALE------KMPKSEKDRLIKTLRAQMQQRAKVLDFEEAARLRDEIARIR 654


>gi|330443972|ref|YP_004376958.1| excinuclease ABC subunit B [Chlamydophila pecorum E58]
 gi|328807082|gb|AEB41255.1| excinuclease ABC, B subunit [Chlamydophila pecorum E58]
          Length = 663

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 323/655 (49%), Positives = 426/655 (65%), Gaps = 11/655 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + P GDQP AIA+L  G+    + Q+LLG TGSGKTFT+A VI     P +V+A
Sbjct: 12  FHLHSPFQPCGDQPEAIAKLCSGLKENVRAQVLLGATGSGKTFTIANVIAQANLPTLVLA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+ FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 72  HNKTLAAQLYQEFREFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSSVSCIYGIGS E+Y  M ++L++G +  +  L S L K  Y+  
Sbjct: 132 SATRSILERRDTLIVSSVSCIYGIGSPENYLSMTLELQVGKAYPRDLLTSQLAKMHYQAS 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            +   R  FR  G  +++FP++ E+ A R+    + +  I    PLT     +     +Y
Sbjct: 192 PLP-QRSAFRELGSVLDVFPAY-ENQALRLEFANDTLVSIDICDPLTMLPQSSTTQTILY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ RL   E   R +E +RL QR T+D+EM++  G C+
Sbjct: 250 PGSHYVTPEAIREYAVRSIREELEERLKFFET--RPVEQERLFQRTTHDIEMIKEIGFCK 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PG PP  L +Y PE+ LL VDESH T+PQI  MYRGD  RK  L EY
Sbjct: 308 GIENYSRHFTGAPPGAPPACLLDYFPEEFLLIVDESHQTLPQIRAMYRGDRSRKEALVEY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  EL++ QG IVEQI+RPTG+ DP  E
Sbjct: 368 GFRLPSAFDNRPLTYEEAQKYFRKVIYVSATPGDTELKKSQGHIVEQILRPTGIPDPLPE 427

Query: 561 IRSARTQVEDVYDEINL-AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           IR A  QV+D+ +EI +  A+   +IL+  LTK++AE++  +L E  I   Y+H++++T 
Sbjct: 428 IRPATGQVDDLLEEIRVRLAKTHEKILVISLTKKLAEEIAVFLNELEIPAAYLHADIETA 487

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  I+ DLR GK DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS +SLIQ  GRAA
Sbjct: 488 ERTHILADLRTGKIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAA 547

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+ KVI YAD  T +I+  + E  RRR+ Q+ +NKKHN+ P+ + + +    +PI   
Sbjct: 548 RNVHGKVIFYADKKTPAIEATLKEAARRRQIQIAYNKKHNLTPRPIIKAVFS--NPI--- 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              T       +Q    ++  K  +K   K M LAA+   FE+AA+ RD I   K
Sbjct: 603 PQGTKKDPFPQEQELSQEELEKL-IKKNEKLMLLAAEEFRFEDAAKYRDLIHSYK 656


>gi|323345701|ref|ZP_08085924.1| excision endonuclease subunit UvrB [Prevotella oralis ATCC 33269]
 gi|323093815|gb|EFZ36393.1| excision endonuclease subunit UvrB [Prevotella oralis ATCC 33269]
          Length = 678

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 324/675 (48%), Positives = 463/675 (68%), Gaps = 26/675 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L +G+   +K Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FKLTSKYAPTGDQPEAIKELTQGVERGDKAQVLLGVTGSGKTFTVANVIANVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN+ ID++R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPENAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDDIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  +LL  R D +VVSSVSCIYG+G   + +  ++ +K G  +++ E L  LV   Y R
Sbjct: 123 SAVSALLSGRKDVVVVSSVSCIYGMGGPAAMTDSVISIKKGQVLDRNEFLRRLVNALYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++ +++  RV+ + ++I+ I E    T  ++ +    +I
Sbjct: 183 NDIDLQRGFFRVKGDTVDIAMAYSDNI-LRVTWWDDEIDNIEEVDSQTYHRMASFGEYQI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  ++    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTEQAVRMIQDDLVKQVDFFTELGDNIKAQRIKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PG+ P  L ++ P+D L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGREPGQKPYCLLDFFPKDYLMVIDESHVSVPQISAMYGGDRARKQNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPL+FEE++ +    I VSATP  +EL + +G++VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLKFEEFHEMIHQVIYVSATPADYELNEAEGVVVEQIIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ DEI     +  R+L+T LTKRMAE+LTE+L +  I+  Y+HS++ TL
Sbjct: 422 EVRPSENQIDDLMDEILTRINRSERVLVTTLTKRMAEELTEFLLDHGIKANYIHSDIATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIMNDLRAGAFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI+YADTIT+S++  IDETTRRR  QL++N++H+I PQ + + I  V+ P   +
Sbjct: 542 RNVNGKVIMYADTITESMRRTIDETTRRRTLQLKYNEEHHITPQQIVKDIKSVL-PTNND 600

Query: 740 DAATTNISIDA-------------------QQLSLSK-KKGKAHLKSLRKQMHLAADNLN 779
           +A T   S                      Q+++  + +K  A+  +L KQ   AA +L+
Sbjct: 601 NATTITQSTSPIRYAYLEPDSGAFAADPIIQRMTREQLEKSIANTTALMKQ---AAKDLD 657

Query: 780 FEEAARIRDEIKRLK 794
           F +AA+ RDEI RL+
Sbjct: 658 FIQAAQYRDEIIRLQ 672


>gi|219684941|ref|ZP_03539882.1| excinuclease ABC, B subunit [Borrelia garinii PBr]
 gi|219671679|gb|EED28735.1| excinuclease ABC, B subunit [Borrelia garinii PBr]
          Length = 664

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 319/667 (47%), Positives = 448/667 (67%), Gaps = 21/667 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I FF + ++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 2   IDFF-LNSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           +R  + + R  F + G+ IEI+PS  H E  A+R+ +   D +EI E Y ++    +N+ 
Sbjct: 181 ERTLMNLERDKFSIKGNIIEIWPSSEHGE-FAYRICL---DFDEIVEIYRISSFSKKNLG 236

Query: 376 T---IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           T     ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEM
Sbjct: 237 TTNSFTLFAKSYFVIPYKNVLEAIPKISYDLNLQCQYFKDNGKLVEAERLKQRVEYDLEM 296

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L  TG C  IENYS+YL+G   G P   LF++ P+D LLFVDESHVT+PQ  GMY GD+ 
Sbjct: 297 LRETGFCSGIENYSKYLSGSEMGRPY-CLFDFFPKDYLLFVDESHVTLPQFRGMYNGDYS 355

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  +GFRLP+ ++NRPL+++E++ L    + VSATPG  E      ++V+QIIRPT
Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPG-LEENLKSSVVVDQIIRPT 414

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+
Sbjct: 415 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVSLGVRAKYL 474

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSE+ TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLI
Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN N  VI+Y D I+ ++Q AI+ET RRR+ Q+++NKK+NI P+++ +KI  +
Sbjct: 535 QTIGRAARNANGLVIMYYDRISVAMQEAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNI 594

Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           ++  L  +    NI+ D +++     LSKKK    +  L+ ++  A ++  FE+A  +RD
Sbjct: 595 LEKEL--NNKNKNINYDLEKIISGERLSKKK---LINKLKFELEEAVNDERFEDAIVLRD 649

Query: 789 EIKRLKS 795
           +IK L S
Sbjct: 650 KIKELSS 656


>gi|216263442|ref|ZP_03435437.1| excinuclease ABC, B subunit [Borrelia afzelii ACA-1]
 gi|215980286|gb|EEC21107.1| excinuclease ABC, B subunit [Borrelia afzelii ACA-1]
          Length = 664

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 318/664 (47%), Positives = 448/664 (67%), Gaps = 15/664 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I FF ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 2   IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKNLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINSEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQRISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374
           +R  I + R  F + GD IEI+PS  H E  A+R+     D +EI + Y ++    +N+ 
Sbjct: 181 ERTLINLERDKFSIKGDIIEIWPSSEHGE-FAYRICF---DFDEIVKIYRISSFSKKNLG 236

Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
              +  ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEM
Sbjct: 237 ATNSFTLFAKSYFVIPYQNVLEAIPKISYDLDLQCQYFKDNGKLVEAERLKQRVEYDLEM 296

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L  TG C  IENYS+YL+G   G P   LF++ P+D LLFVDESHVT+PQ  GMY GD+ 
Sbjct: 297 LRETGFCSGIENYSKYLSGSTMGRPY-CLFDFFPKDYLLFVDESHVTLPQFRGMYNGDYS 355

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  +GFRLP+ ++NRPL+++E++ L    + VSATPG  E E+   +IV+QIIRPT
Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPGFEENEKS-SVIVDQIIRPT 414

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    ++ +Y+
Sbjct: 415 GLVDPEIITRHSDGQMEDLYIEIQKRVALKERVLITTLTKKMSEDLTEYLVTLGVKAKYL 474

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSE+ TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLI
Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSATSLI 534

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++NKK+NI P+++ +KI  +
Sbjct: 535 QTIGRAARNSNGLVIMYYDKISVAMREAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNI 594

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIK 791
           ++  L  +    NIS D +++   +K  K  L   L+ ++  A ++  FE+A  +RD+IK
Sbjct: 595 LEKEL--NNKNKNISYDFEKMVSGEKLSKKKLIDKLKFELEEAVNDERFEDAIVLRDKIK 652

Query: 792 RLKS 795
            L S
Sbjct: 653 ELGS 656


>gi|51599087|ref|YP_073275.1| excinuclease ABC subunit B [Borrelia garinii PBi]
 gi|81825609|sp|Q65ZT8|UVRB_BORGA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|51573658|gb|AAU07683.1| excinuclease ABC, subunit B [Borrelia garinii PBi]
          Length = 664

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 319/667 (47%), Positives = 452/667 (67%), Gaps = 21/667 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I FF + ++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 2   IDFF-LNSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFSVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           +R  + + R  F + G+ IEI+PS  H E  A+R+ +   D +EI E Y ++    +N+ 
Sbjct: 181 ERTLMNLERDKFSIKGNIIEIWPSSEHGE-FAYRICL---DFDEIVEIYRISSFSKKNLG 236

Query: 376 T---IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           T     ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEM
Sbjct: 237 TTNSFTLFAKSYFVIPYKNVLEAIPKISYDLNLQCQYFKDNGKLVEAERLKQRVEYDLEM 296

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L  TG C  IENYS+YL+G +  E P  LF++ P+D LLFVDESHVT+PQ  GMY GD+ 
Sbjct: 297 LRETGFCSGIENYSKYLSG-SEMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDYS 355

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  +GFRLP+ ++NRPL+++E++ L    + VSATPG  E  + + ++V+QIIRPT
Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPGLEENLKSR-VVVDQIIRPT 414

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+
Sbjct: 415 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVSLGVRAKYL 474

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSE+ TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLI
Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN N  VI+Y DTI+ +++ AI+ET RRR+ Q+++NKK+NI P+++ +KI  +
Sbjct: 535 QTIGRAARNSNGLVIMYYDTISVAMREAIEETNRRRQIQVDYNKKNNITPKTIVKKIQNI 594

Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           ++  L  +    NI+ D +++     LSKKK    +  L+ ++  A ++  FE+A  +RD
Sbjct: 595 LEKEL--NNKNKNINYDLEKIISGERLSKKK---LINKLKFELEEAVNDERFEDAIVLRD 649

Query: 789 EIKRLKS 795
           +IK L S
Sbjct: 650 KIKELSS 656


>gi|294155867|ref|YP_003560251.1| excinuclease UvrABC system, helicase subunit (UvrB) [Mycoplasma
           crocodyli MP145]
 gi|291600200|gb|ADE19696.1| excinuclease UvrABC system, helicase subunit (UvrB) [Mycoplasma
           crocodyli MP145]
          Length = 657

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 296/660 (44%), Positives = 434/660 (65%), Gaps = 4/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ +Q++ +Y PSGDQP AI +L +G+    K Q+L GVTGSGKTFT+A VI+   RP +
Sbjct: 1   MSIYQLRANYKPSGDQPRAIQELSEGVAEGLKHQVLEGVTGSGKTFTIANVIQNFDRPVL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LA+QLYSE K+FFPHNAVEYFVSY+DYY+PEAY+P +DTYIEK S  N+ I+ 
Sbjct: 61  VLSHNKTLASQLYSELKSFFPHNAVEYFVSYFDYYRPEAYIPTSDTYIEKTSKTNQDIEL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R S   SLL R D IVV+SVS IYG  + + Y + I ++  G     KE L +L+K +Y
Sbjct: 121 LRMSTINSLLRRRDTIVVASVSSIYGALNPQEYQKGIFEIFKGMDFNFKEFLRTLIKIKY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI     TF V GD++ I P+  ++   R+  FG+ IE I +   +T   I+  +  
Sbjct: 181 DRNDIDNPPATFAVRGDTVFISPADSDEFLLRIDFFGDTIEAIYKVDKVTKNIIKEFKVY 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY    Y       +  +  I+EEL  R+    +  +LLEAQR+ +R+  D++ +   G
Sbjct: 241 AIYPGEAYTVENSIFDKILPMIQEELNQRIKYFNENNKLLEAQRISERVKNDMDEMAEYG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENY+ YL GR+  + P TLF+Y+P D+++F+DESH+ IPQ+ GMY+GD  RK TL
Sbjct: 301 FCGGIENYTMYLDGRDFNQRPFTLFDYLPNDTIIFLDESHMMIPQLHGMYKGDRARKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEW-NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
             YGFRLPS ++NRPL+F E+        I +SATP  +E++Q QG++ +  +RPTGL+D
Sbjct: 361 VNYGFRLPSALENRPLKFHEFEQAFDFQKIYISATPNEYEIDQSQGLVTKLYVRPTGLLD 420

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R  + Q+ED++DEI +   +  R ++   TKR AE+L+ Y+ +RNI+  Y+HSE 
Sbjct: 421 PILEMRPTKNQIEDIFDEIKIQNDKNQRTIVLTTTKRSAEELSSYMQKRNIKSAYIHSEY 480

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T +R EI+R LR G +DV++GINLLREG+D+PE  LV +LDADKEGF+R+++SLIQ  G
Sbjct: 481 DTFKRNEILRKLRKGIYDVVIGINLLREGIDLPEVSLVVVLDADKEGFMRNRSSLIQIAG 540

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN + +VI YAD  TKS++   ++   +RE Q+ +NKKHNI PQ++ ++I E   PI
Sbjct: 541 RAARNKDGRVIFYADVETKSLKATFEDNKEKRELQIAYNKKHNITPQTIYKEIAE---PI 597

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              D      ++ A+   ++K+  +  +K ++ QM  AA +L++E A  +RD I  ++ S
Sbjct: 598 QGHDIDNALEAVLAKDKKITKQDKEELIKKIKVQMKQAAKDLDYERAIELRDLIIEIEKS 657


>gi|110004147|emb|CAK98485.1| excinuclease abc subunit b protein [Spiroplasma citri]
          Length = 654

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 308/659 (46%), Positives = 431/659 (65%), Gaps = 19/659 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ ++Y P+GDQP AI +L   + + +K Q+LLG TG+GKTFTMA VIE  Q+P +VM
Sbjct: 1   MFKLTSNYLPAGDQPRAIEKLTTNLFANKKHQVLLGATGTGKTFTMANVIENYQKPTLVM 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLY E K  FP N VEYFVS +D+YQPEAY+P  D YI K++  N ++D MR
Sbjct: 61  AHNKTLAMQLYVELKEMFPENRVEYFVSNFDFYQPEAYLPGKDLYINKDARQNMELDMMR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA  +L  R D IVV+SV+ IYG      Y +  +Q+     + +K+L + LV   Y R
Sbjct: 121 LSAFNALTTRKDVIVVASVAAIYGAQDPNEYKKSFLQINRNQKISKKDLANFLVSSGYVR 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI +I GTF   GD I+I P        R+ +FG++I++++    +TG   + + T+ I
Sbjct: 181 NDIELIPGTFSAKGDVIKIVPGWNVKTFIRIDLFGDEIDDLAYIDGITGDVTQRLSTLTI 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +    Y+T    L  A+K I+ ELK+RL+ELE  G+++E QRL+QR  YDL++L  +G C
Sbjct: 241 FPAQDYITSPERLVEAIKRIEAELKVRLVELEVAGKIVELQRLKQRTEYDLDLLRESGIC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L  R  GE P TL ++  ED L  +DESH+++PQI  MY  D  RK TL  
Sbjct: 301 SGIENYSRHLDLREEGEAPYTLIDFFGEDFLTIIDESHMSLPQIRAMYNTDRSRKETLVN 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRL S +DNRPL F+E+N      I VSATPG +EL      +VEQIIRPTGL+DP V
Sbjct: 361 YGFRLKSALDNRPLNFDEFNQKLKNVIYVSATPGDYELGLVNNQVVEQIIRPTGLLDPTV 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E++S   Q++D+ +++ +  ++  R+ +T LT RM+EDLT YL E+N++V Y+HSE+KTL
Sbjct: 421 EVKSTVGQIDDIIEQVKIRRKKNERVFITTLTIRMSEDLTSYLQEQNVKVAYLHSELKTL 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +I+ DLR G +D +VG+NL+REG+DIPE  L+ ILDADK+GFLR++ SLIQTIGRAA
Sbjct: 481 ERSQILLDLRKGVYDCIVGVNLIREGIDIPEVSLICILDADKQGFLRNERSLIQTIGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN    VILYADT+++S++ A+ ET RRR+ Q  +N K++I P ++ + I +        
Sbjct: 541 RNAAGHVILYADTVSESMEKAMQETARRRQIQEAYNLKYHITPTTIIKNIRDY------- 593

Query: 740 DAATTNISIDAQQL-SLSKKKGKAH-------LKSLRKQMHLAADNLNFEEAARIRDEI 790
               TNI     +L  +  KK K +       L+ LRK+M+ A+  L+FE AA +RD I
Sbjct: 594 ----TNIKRQDDKLHKIKNKKSKEYKTAKEGLLQDLRKEMYEASKKLDFERAAELRDII 648


>gi|111115671|ref|YP_710289.1| excinuclease ABC subunit B [Borrelia afzelii PKo]
 gi|123046892|sp|Q0SM15|UVRB_BORAP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|110890945|gb|ABH02113.1| excinuclease ABC, subunit B [Borrelia afzelii PKo]
          Length = 664

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 317/664 (47%), Positives = 448/664 (67%), Gaps = 15/664 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I FF ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 2   IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKNLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINSEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQRISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374
           +R  I + R  F + GD IEI+PS  H E  A+R+ +   D +EI + Y ++    +N+ 
Sbjct: 181 ERTLINLERDKFSIKGDIIEIWPSSEHGE-FAYRICL---DFDEIVKIYRISSFSKKNLG 236

Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
              +  ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEM
Sbjct: 237 ATNSFTLFAKSYFVIPYQNVLEAIPKISYDLDLQCQYFKDNGKLVEAERLKQRVEYDLEM 296

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L  TG C  IENYS+YL+G   G P   LF++ P+D LLFVDESHVT+PQ  GMY GD+ 
Sbjct: 297 LRETGFCSGIENYSKYLSGSTMGRPY-CLFDFFPKDYLLFVDESHVTLPQFRGMYNGDYS 355

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  +GFRLP+ ++NRPL+++E++ L    + VSATPG  E E+   + V+QIIRPT
Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPGFEENEKS-SVTVDQIIRPT 414

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    ++ +Y+
Sbjct: 415 GLVDPEIITRHSDGQMEDLYIEIQKRVALKERVLITTLTKKMSEDLTEYLVTLGVKAKYL 474

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSE+ TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLI
Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSATSLI 534

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++NKK+NI P+++ +KI  +
Sbjct: 535 QTIGRAARNSNGLVIMYYDKISVAMREAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNI 594

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIK 791
           ++  L  +    NIS D +++   +K  K  L   L+ ++  A ++  FE+A  +RD+IK
Sbjct: 595 LEKEL--NNKNKNISYDFEKMVSGEKLSKKKLIDKLKFELEEAVNDERFEDAIVLRDKIK 652

Query: 792 RLKS 795
            L S
Sbjct: 653 ELGS 656


>gi|219685788|ref|ZP_03540598.1| excinuclease ABC, B subunit [Borrelia garinii Far04]
 gi|219672673|gb|EED29702.1| excinuclease ABC, B subunit [Borrelia garinii Far04]
          Length = 664

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 317/667 (47%), Positives = 447/667 (67%), Gaps = 21/667 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I FF + ++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 2   IDFF-LNSEYFPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL++R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLVKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           +R  + + R  F + G+ IEI+PS  H E  A+R+ +   D +EI E Y ++    +N+ 
Sbjct: 181 ERTLMNLERDKFSIKGNIIEIWPSSEHGE-FAYRICL---DFDEIVEIYRISSFSKKNLG 236

Query: 376 T---IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           T     ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEM
Sbjct: 237 TTNSFTLFAKSYFVIPYKNVLEAIPKISYDLNLQCQYFKDNGKLVEAERLKQRVEYDLEM 296

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L  TG C  IENYS+YL+G   G P   LF++ P+D LLFVDESHVT+PQ  GMY GD+ 
Sbjct: 297 LRETGFCSGIENYSKYLSGSEMGRPY-CLFDFFPKDYLLFVDESHVTLPQFRGMYNGDYS 355

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  +GFRLP+ ++NRPL+++E++ L    + VSATPG  E      ++V+QIIRPT
Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPG-LEENFKSSVVVDQIIRPT 414

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +  +Y+
Sbjct: 415 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVSLGVGAKYL 474

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSE+ TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLI
Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN N  VI+Y D I+ ++Q AI+ET RRR+ Q+++NKK+NI P+++ +KI  +
Sbjct: 535 QTIGRAARNANGLVIMYYDRISVAMQEAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNI 594

Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           ++  L  +    NI+ D +++     LSKKK    +  L+ ++  A ++  FE+A  +RD
Sbjct: 595 LEKEL--NNKNKNINYDLEKIISGERLSKKK---LINKLKFELEEAVNDERFEDAIVLRD 649

Query: 789 EIKRLKS 795
           +IK   S
Sbjct: 650 KIKEFSS 656


>gi|282879576|ref|ZP_06288307.1| excinuclease ABC, B subunit [Prevotella timonensis CRIS 5C-B1]
 gi|281306524|gb|EFA98553.1| excinuclease ABC, B subunit [Prevotella timonensis CRIS 5C-B1]
          Length = 678

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 319/673 (47%), Positives = 449/673 (66%), Gaps = 20/673 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL  G+   +  Q+LLGVTGSGKTFT+A VI+ +Q+P ++++
Sbjct: 3   FKLTSKYQPTGDQPQAIQQLTDGVRRGDPAQVLLGVTGSGKTFTVANVIQNIQKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P +D YIEK+ SIN++IDR+R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPENAVEYYVSYYDYYQPEAYLPSSDLYIEKDLSINDEIDRLRL 122

Query: 261 SATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  +LL     +VV S   CIYG+G   + +  I+ ++ G  +++ + L  LV+  Y R
Sbjct: 123 SAVSALLSGRSDVVVVSSVSCIYGMGGPSAMTNSIISIQKGQHIDRNDFLRKLVEALYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++  +V  R++ + ++IE I E    T  ++ + E   I
Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYSNNV-LRITWWDDEIETIEEVDSTTFHQLESFEEYHI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A+  I+ +L  ++   E+ G  L+AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTERAIHEIQNDLVKQIDYFEEIGDQLKAQRIKERVEYDMEMIKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  GE P  L ++ P+D L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRQAGERPYCLLDFFPKDYLMVIDESHVSVPQISAMYGGDRARKRNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE+  +    I VSATP  +EL++ +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLRFEEFQDMLHQVIYVSATPADYELQEAEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ DEI    ++G R+L+T LTKRMAE+LTEYL   ++R  Y+HS++ TL
Sbjct: 422 DVRPSENQIDDLLDEILQRTERGERVLVTTLTKRMAEELTEYLLNHDVRANYIHSDIGTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMNDLRAGMFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++ KVI+YADTIT S++  IDET RRR  QL++N++H+I P  + + I   + P   E
Sbjct: 542 RNIHGKVIMYADTITDSMRKTIDETARRRSIQLKYNEEHHITPTQIVKDIKNAL-PTAKE 600

Query: 740 DAATTNIS-IDAQQLSLSKKKGKAHLKSLRKQ----------------MHLAADNLNFEE 782
                  S + AQQ  +    G      + +Q                M  AA +L+F +
Sbjct: 601 KMKEKRYSTVAAQQAYMEPLGGAFAADPIVQQMTHEQLEKSIADTTAMMKQAAKDLDFLQ 660

Query: 783 AARIRDEIKRLKS 795
           AA+ RDEI RL++
Sbjct: 661 AAQYRDEIIRLQT 673


>gi|218249758|ref|YP_002375332.1| excinuclease ABC, B subunit [Borrelia burgdorferi ZS7]
 gi|226695479|sp|B7J0S9|UVRB_BORBZ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|218164946|gb|ACK75007.1| excinuclease ABC, B subunit [Borrelia burgdorferi ZS7]
          Length = 668

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 315/664 (47%), Positives = 446/664 (67%), Gaps = 15/664 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I FF ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 2   IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           +R  + + R  F + GD +EI+PS  H E  A+R+ +  ++I EI      + +K+    
Sbjct: 181 ERTLMNLERDKFSIKGDIVEIWPSSEHGE-FAYRICLDFDEIVEIYRVSSFSKKKLGATN 239

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
           +  ++A S++V P   +  A+  I  +L ++    +  GRL+EA+RL+QR+ YDLEML  
Sbjct: 240 SFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGRLVEAERLKQRVEYDLEMLRE 299

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
           TG C  IENYS+YL+G +  E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  RK 
Sbjct: 300 TGFCSGIENYSKYLSG-STMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHSRKL 358

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L  +GFRLP+ ++NRPL+++E+  L    + VSATPG  E E+   ++V+QIIRPTGLV
Sbjct: 359 NLVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPTGLV 417

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+HSE
Sbjct: 418 DPEIITRRSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYLHSE 477

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLIQTI
Sbjct: 478 LDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLIQTI 537

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI  +++ 
Sbjct: 538 GRAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNILEK 597

Query: 736 ILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            L  +    N+  D +++     LSKKK    +  L+  +  A ++  FE+A  +RD+IK
Sbjct: 598 EL--NNKNKNVGYDFEKIISDERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRDKIK 652

Query: 792 RLKS 795
            L S
Sbjct: 653 ELSS 656


>gi|312149447|gb|ADQ29518.1| excinuclease ABC, B subunit [Borrelia burgdorferi N40]
          Length = 668

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 318/667 (47%), Positives = 448/667 (67%), Gaps = 21/667 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I FF ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 2   IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374
           +R  + + R  F + GD +EI+PS  H E  A+R+ +   D +EI E Y ++    +N+ 
Sbjct: 181 ERTLMTLERDKFSIKGDIVEIWPSSEHGE-FAYRICL---DFDEIVEIYRVSSFSKKNLG 236

Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
              +  ++A S++V P   +  A+  I  +L ++    +  GRL+EA+RL+QR+ YDLEM
Sbjct: 237 ATNSFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGRLVEAERLKQRVEYDLEM 296

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L  TG C  IENYS+YL+G +  E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  
Sbjct: 297 LRETGFCSGIENYSKYLSG-STMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHS 355

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  +GFRLP+ ++NRPL+++E+  L    + VSATPG  E E+   ++V+QIIRPT
Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPT 414

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+
Sbjct: 415 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYL 474

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSE+ TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLI
Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++NKK+NI P+++ +KI  +
Sbjct: 535 QTIGRAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNI 594

Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           ++  L  +    N+  D +++     LSKKK    +  L+  +  A ++  FE+A  +RD
Sbjct: 595 LEKEL--NNKNKNVGYDFEKIISGERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRD 649

Query: 789 EIKRLKS 795
           +IK L S
Sbjct: 650 KIKELSS 656


>gi|315931875|gb|EFV10830.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni
           327]
          Length = 596

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 298/582 (51%), Positives = 400/582 (68%), Gaps = 9/582 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
            ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+
Sbjct: 2   LELTSEFKPSPDQQEAINGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R 
Sbjct: 62  HNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR 
Sbjct: 122 SATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y
Sbjct: 182 DNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+
Sbjct: 242 PTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL
Sbjct: 302 GVENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEW---NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +YGFRLPS +DNRPL F+E+   NC     + VSATP   ELE  +  I  QI+RPTGL
Sbjct: 362 VDYGFRLPSALDNRPLMFDEFIHKNC---QFLFVSATPAPLELELSKENIFHQIMRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS
Sbjct: 419 LDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT
Sbjct: 479 DIDAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
           +GRAARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NK
Sbjct: 539 MGRAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNK 580


>gi|15595181|ref|NP_212970.1| excinuclease ABC subunit B [Borrelia burgdorferi B31]
 gi|8134783|sp|O51776|UVRB_BORBU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|2688782|gb|AAC67185.1| excinuclease ABC, subunit B (uvrB) [Borrelia burgdorferi B31]
          Length = 673

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 317/667 (47%), Positives = 448/667 (67%), Gaps = 21/667 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I FF ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 7   IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 65

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 66  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 125

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 126 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 185

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374
           +R  + + R  F + GD +EI+PS  H E  A+R+ +   D +EI E Y ++    +N+ 
Sbjct: 186 ERTLMNLERDKFSIKGDIVEIWPSSEHGE-FAYRICL---DFDEIVEIYRVSSFSKKNLG 241

Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
              +  ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEM
Sbjct: 242 ATNSFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGKLVEAERLKQRVEYDLEM 301

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L  TG C  IENYS+YL+G +  E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  
Sbjct: 302 LRETGFCSGIENYSKYLSG-STMERPYCLFDFFPKDXLLFVDESHVTLPQFRGMYNGDHS 360

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  +GFRLP+ ++NRPL+++E+  L    + VSATPG  E E+   ++V+QIIRPT
Sbjct: 361 RKLNLVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPT 419

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+
Sbjct: 420 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYL 479

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSE+ TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLI
Sbjct: 480 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 539

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++NKK+NI P+++ +KI  +
Sbjct: 540 QTIGRAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNI 599

Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           ++  L  +    N+  D +++     LSKKK    +  L+  +  A ++  FE+A  +RD
Sbjct: 600 LEKEL--NNKNKNVGYDFEKIISGERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRD 654

Query: 789 EIKRLKS 795
           +IK L S
Sbjct: 655 KIKELSS 661


>gi|224534171|ref|ZP_03674751.1| excinuclease ABC, B subunit [Borrelia spielmanii A14S]
 gi|224514596|gb|EEF84910.1| excinuclease ABC, B subunit [Borrelia spielmanii A14S]
          Length = 662

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 315/665 (47%), Positives = 447/665 (67%), Gaps = 15/665 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I FF ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 2   IDFF-LKSEYLPAGDQPKAIKEIEDSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINAEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQRISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374
           +R  + + R  F V GD +E++PS  H E  A+R+ +   D +EI + Y ++    +N+ 
Sbjct: 181 ERTLMNLERDKFSVKGDVVEVWPSSEHGE-FAYRICL---DFDEIVKIYRISSFSKKNLG 236

Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
              +  ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEM
Sbjct: 237 ATNSFTLFAKSYFVIPYQNVLEAIPKISYDLDLQCQYFKDNGKLVEAERLKQRVEYDLEM 296

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L  TG C  IENYS+YL+G   G P   LF++ P+D LLFVDESHVT+PQ  GMY GD  
Sbjct: 297 LRETGFCSGIENYSKYLSGSTMGRPY-CLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHS 355

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  +GFRLP+ ++NRPL+++E++ L    I VSATPG +E      ++V+QIIRPT
Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFDALINQVIFVSATPG-FEENDKSSVVVDQIIRPT 414

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    ++ +Y+
Sbjct: 415 GLVDPEIVTRHSDGQMEDLYIEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVKAKYL 474

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSE+ TLER+E+I  LR  + DV+VGINLLREGLDIPE  LV ILDADK GFLRS TSLI
Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVVILDADKVGFLRSTTSLI 534

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN N  VI+Y D I+ ++Q AI+ET RRR+ Q+++NKK+NI P+++ +KI  +
Sbjct: 535 QTIGRAARNSNGLVIMYYDKISVAMQEAIEETNRRRQIQIDYNKKNNIIPKTIVKKIQNI 594

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIK 791
           ++  L  +    NIS D +++   +K  K  L   L+ ++  A ++  FE+A  +RD+IK
Sbjct: 595 LEKEL--NNKNKNISYDFEKIISGEKLSKKKLIDKLKFELEEAVNDERFEDAIVLRDKIK 652

Query: 792 RLKSS 796
            L S+
Sbjct: 653 ELSST 657


>gi|224532435|ref|ZP_03673061.1| excinuclease ABC, B subunit [Borrelia burgdorferi WI91-23]
 gi|224512607|gb|EEF82982.1| excinuclease ABC, B subunit [Borrelia burgdorferi WI91-23]
          Length = 668

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 317/667 (47%), Positives = 448/667 (67%), Gaps = 21/667 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I FF ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 2   IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374
           +R  + + R  F + GD +EI+PS  H E  A+R+ +   D +EI E Y ++    +N+ 
Sbjct: 181 ERTLMTLERDKFSIKGDIVEIWPSSEHGE-FAYRICL---DFDEIVEIYRVSSFSKKNLG 236

Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
              +  ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEM
Sbjct: 237 ATNSFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDSGKLVEAERLKQRVEYDLEM 296

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L  TG C  IENYS+YL+G +  E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  
Sbjct: 297 LRETGFCSGIENYSKYLSG-STMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHS 355

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  +GFRLP+ ++NRPL+++E+  L    + VSATPG  E E+   ++V+QIIRPT
Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPT 414

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+
Sbjct: 415 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYL 474

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSE+ TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLI
Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++NKK+NI P+++ +KI  +
Sbjct: 535 QTIGRAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNI 594

Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           ++  L  +    N+  D +++     LSKKK    +  L+  +  A ++  FE+A  +RD
Sbjct: 595 LEKEL--NNKNKNVGYDFEKIISGERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRD 649

Query: 789 EIKRLKS 795
           +IK L S
Sbjct: 650 KIKELSS 656


>gi|15828567|ref|NP_325927.1| excinuclease ABC subunit B [Mycoplasma pulmonis UAB CTIP]
 gi|14548015|sp|P58174|UVRB_MYCPU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|14089509|emb|CAC13269.1| EXCINUCLEASE ABC SUBUNIT B [Mycoplasma pulmonis]
          Length = 657

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 300/655 (45%), Positives = 427/655 (65%), Gaps = 15/655 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y PSGDQP AI +L + I   +K  +L GVTGSGKTFT+A +I    R  +V++
Sbjct: 2   FKLHSNYSPSGDQPRAIQELAEDIEKNKKHLVLQGVTGSGKTFTIANLIAKFNRTTLVLS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA+QLYSE K FFP N VEYFVSY+D+Y+PEAY+P TDTYI+K S  N ++D MR 
Sbjct: 62  HNKTLASQLYSELKEFFPENRVEYFVSYFDFYRPEAYLPSTDTYIDKTSKTNNELDAMRM 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S+  +LL R D IVVSSV+ IYG  + + Y +    +++G  +++K+    LVK+ YKR 
Sbjct: 122 SSLNALLTRKDTIVVSSVAAIYGAFNPQEYQKNFFSIEVGQELKRKDFFLDLVKRHYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ ++ G+F   GD +EI P+   D A RV  FG++IE I+   PL     +  +   I+
Sbjct: 182 DVNLVPGSFSAKGDVVEIAPAWTSDFAIRVEFFGDEIEAIATIDPLNKTLKKRHKNYLIF 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y T +  ++  +  +KEEL  RL   EK  +LLE QRLEQR+  D++ LE  G C 
Sbjct: 242 PANAYSTNKDIVSRVVLQVKEELIDRLDYFEKNNKLLEMQRLEQRVKSDMDSLEEFGICS 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+RY+ GR  GE P TL +Y+PE++L+F+DESH+ +PQ++ M+ GD  RK  L +Y
Sbjct: 302 GIENYARYIDGREQGEKPYTLLDYLPEEALVFIDESHMMVPQLNAMFNGDRSRKQNLVDY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+   +   I +SATP  +E+E+    I + IIRPTGL+DP +E
Sbjct: 362 GFRLPSALDNRPLTFSEFEEYKFPKIYISATPSEYEIEKADQKITKMIIRPTGLLDPIIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
            RS   QVED+YDE+     +  R L+   TKR +E+LT Y  E+  +V Y+HS+ KT E
Sbjct: 422 TRSKTNQVEDIYDELQKQKAKNERTLILTTTKRFSEELTRYFQEKGEKVAYIHSDHKTFE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+R LR G +D+++GINLLREG+D+PE  LV ILDADKE FLR+  SLIQ +GRA+R
Sbjct: 482 RNEILRKLRKGVYDLVIGINLLREGIDLPEVSLVIILDADKESFLRNTKSLIQIVGRASR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + KVI YAD ++KS++  I++   +R+ Q+++NK+H I PQ++ + I E I+    E 
Sbjct: 542 NSSGKVIFYADFVSKSMRETIEDNFEKRQIQIQYNKEHGIVPQTIIKDIPEPIEGHGFEH 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLK-------SLRKQMHLAADNLNFEEAARIRD 788
           +    +S        ++KK KA LK        L+KQM  A+  +N+E A  +RD
Sbjct: 602 SIEYFLS--------NEKKSKAQLKEKEKLILDLKKQMLEASQKMNYERAIHLRD 648


>gi|294660207|ref|NP_852820.2| excinuclease ABC subunit B [Mycoplasma gallisepticum str. R(low)]
 gi|284811857|gb|AAP56388.2| excinuclease ABC subunit B [Mycoplasma gallisepticum str. R(low)]
 gi|284930281|gb|ADC30220.1| excinuclease ABC subunit B [Mycoplasma gallisepticum str. R(high)]
          Length = 664

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 306/661 (46%), Positives = 434/661 (65%), Gaps = 16/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +   P+G QP AI +L+ GI+  +K Q LLG TG+GKTFT+A VIE  Q+  +++A
Sbjct: 6   FKLVSKNKPAGHQPEAIKKLVDGINKNKKYQTLLGATGTGKTFTIANVIEKTQKKTLILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK  FP+NAVEYFVSY+D+YQPEAY+PRTD YIEK S  N++I+ +R 
Sbjct: 66  HNKTLAAQLYLEFKELFPNNAVEYFVSYFDFYQPEAYIPRTDMYIEKSSVTNDEIEMLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           ++  SL  RND IVV+SV+CIY   + E +    + LK+G++++  +L  +L++  Y R 
Sbjct: 126 ASLNSLSTRNDVIVVASVACIYPAANPEDFDIYRIILKVGNTLKLSDLKENLIRLNYARS 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                 GTFR+ GD ++IFP ++ D   R+S FG+++EEI + +P     I    +  + 
Sbjct: 186 PECNEPGTFRIKGDVVDIFPGYVSDHIIRLSFFGDELEEIRKIHPTDSSVIEKYTSYVLG 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y+      +TA+K I+EEL  R+ E + + +L+EAQRL+QR  YD++ ++  G C 
Sbjct: 246 PANEYILNFERKDTAIKRIQEELMFRVQEFKNQQKLVEAQRLQQRTEYDIDAIKEFGFCN 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+ +L  R  G  P TLF++  +D L+ +DESH+++PQ+ GM+  D  RK TL EY
Sbjct: 306 GIENYAFHLELREKGSTPWTLFDFFGDDWLMVIDESHISVPQVKGMFNTDKSRKTTLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS ++NRPL ++E++      I VSATP   E++     I+EQI+RPTGL+DP VE
Sbjct: 366 GFRLPSALENRPLNYDEFSNKSDQVIFVSATPNDEEIKLSNNEIIEQIVRPTGLLDPTVE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q+ D+ +E+     +  R  +TV T +MAEDLTEYL ERN +  Y+H+E+KTLE
Sbjct: 426 IRPRLDQINDLMNELKKQKDKNERTFITVTTIKMAEDLTEYLKERNFKCAYIHNELKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  I+ DLR GK+D +VGINLLREGLDIPE  LV I DADK G+ RS  +LIQTIGRAAR
Sbjct: 486 RSLILNDLRRGKYDCVVGINLLREGLDIPEVSLVCIFDADKPGYFRSDKALIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---L 737
           N N +VI+YAD +TK++++A+DET RRR+ Q + NK H I P++       +I PI   L
Sbjct: 546 NQNGRVIMYADEMTKAMKIAVDETNRRRKIQEKFNKDHKITPKT-------IIKPIYDDL 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLK---SLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              A+   I    + +  +K KG   +K    LR +M  AA N N+E AA +RD I  L+
Sbjct: 599 KNKASHKQIE---EVMRKTKAKGDKFIKMIEDLRNEMLEAAKNQNYEHAASLRDLIIELE 655

Query: 795 S 795
           +
Sbjct: 656 T 656


>gi|195941954|ref|ZP_03087336.1| excinuclease ABC subunit B [Borrelia burgdorferi 80a]
 gi|223889305|ref|ZP_03623892.1| excinuclease ABC, B subunit [Borrelia burgdorferi 64b]
 gi|224534121|ref|ZP_03674703.1| excinuclease ABC, B subunit [Borrelia burgdorferi CA-11.2a]
 gi|225550272|ref|ZP_03771231.1| excinuclease ABC, B subunit [Borrelia burgdorferi 118a]
 gi|226321300|ref|ZP_03796828.1| excinuclease ABC, B subunit [Borrelia burgdorferi Bol26]
 gi|223885226|gb|EEF56329.1| excinuclease ABC, B subunit [Borrelia burgdorferi 64b]
 gi|224512743|gb|EEF83112.1| excinuclease ABC, B subunit [Borrelia burgdorferi CA-11.2a]
 gi|225369140|gb|EEG98594.1| excinuclease ABC, B subunit [Borrelia burgdorferi 118a]
 gi|226233332|gb|EEH32083.1| excinuclease ABC, B subunit [Borrelia burgdorferi Bol26]
          Length = 668

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 317/667 (47%), Positives = 448/667 (67%), Gaps = 21/667 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I FF ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 2   IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374
           +R  + + R  F + GD +EI+PS  H E  A+R+ +   D +EI E Y ++    +N+ 
Sbjct: 181 ERTLMNLERDKFSIKGDIVEIWPSSEHGE-FAYRICL---DFDEIVEIYRVSSFSKKNLG 236

Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
              +  ++A S++V P   +  A+  I  +L ++    +  GRL+EA+RL+QR+ YDLEM
Sbjct: 237 ATNSFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGRLVEAERLKQRVEYDLEM 296

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L  TG C  IENYS+YL+G +  E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  
Sbjct: 297 LRETGFCSGIENYSKYLSG-STMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHS 355

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  +GFRLP+ ++NRPL+++E+  L    + VSATPG  E E+   ++V+QIIRPT
Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPT 414

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+
Sbjct: 415 GLVDPEIITRRSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYL 474

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSE+ TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLI
Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI  +
Sbjct: 535 QTIGRAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNI 594

Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           ++  L  +    N+  D +++     LSKKK    +  L+  +  A ++  FE+A  +RD
Sbjct: 595 LEKEL--NNKNKNVGYDFEKIISGERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRD 649

Query: 789 EIKRLKS 795
           +IK L S
Sbjct: 650 KIKELSS 656


>gi|284931048|gb|ADC30986.1| excinuclease ABC subunit B [Mycoplasma gallisepticum str. F]
          Length = 664

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 306/661 (46%), Positives = 433/661 (65%), Gaps = 16/661 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +   P+G QP AI +L+ GI+  +K Q LLG TG+GKTFT+A VIE  Q+  +++A
Sbjct: 6   FKLVSKNKPAGHQPEAIKKLVDGINKNKKYQTLLGATGTGKTFTIANVIEKTQKKTLILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK  FP+NAVEYFVSY+D+YQPEAY+PRTD YIEK S  N++I+ +R 
Sbjct: 66  HNKTLAAQLYLEFKELFPNNAVEYFVSYFDFYQPEAYIPRTDMYIEKSSVTNDEIEMLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           ++  SL  RND IVV+SV+CIY   + E +    + LK+G++++  +L  +L++  Y R 
Sbjct: 126 ASLNSLSTRNDVIVVASVACIYPAANPEDFDIYRIILKVGNTLKLSDLKENLIRLNYARS 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                 GTFR+ GD ++IFP ++ D   R+S FG+++EEI + +P     I    +  + 
Sbjct: 186 PECNEPGTFRIKGDVVDIFPGYVNDHIIRLSFFGDELEEIRKIHPTDSSVIEKYTSYVLG 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y+      +TA+K I+EEL  R+ E + + +L+EAQRL+QR  YD++ ++  G C 
Sbjct: 246 PANEYILNFERKDTAIKRIQEELMFRVQEFKNQQKLVEAQRLQQRTEYDIDAIKEFGFCN 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+ +L  R  G  P TLF++   D L+ +DESH+++PQ+ GM+  D  RK TL EY
Sbjct: 306 GIENYAFHLELREKGSTPWTLFDFFGNDWLMVIDESHISVPQVKGMFNTDKSRKTTLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS ++NRPL ++E++      I VSATP   E++     I+EQI+RPTGL+DP VE
Sbjct: 366 GFRLPSALENRPLNYDEFSNKSDQVIFVSATPNDEEIKLSNNEIIEQIVRPTGLLDPTVE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q+ D+ +E+     +  R  +TV T ++AEDLTEYL ERN +  Y+H+E+KTLE
Sbjct: 426 IRPRLDQINDLMNELKKQKDKNERTFITVTTIKIAEDLTEYLKERNFKCAYIHNELKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  I+ DLR GK+D +VGINLLREGLDIPE  LV I DADK G+ RS  +LIQTIGRAAR
Sbjct: 486 RSLILNDLRRGKYDCVVGINLLREGLDIPEVSLVCIFDADKPGYFRSDKALIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---L 737
           N N +VI+YAD +TK++++A+DET RRRE Q + NK H I P++       +I PI   L
Sbjct: 546 NQNGRVIMYADEMTKAMKIAVDETNRRREIQEKFNKDHKITPKT-------IIKPIYNDL 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLK---SLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              A+   I    + +  +K KG   +K    LR +M  AA N N+E AA +RD I  L+
Sbjct: 599 RNKASHKQIE---EAMRKTKAKGDKFIKMIEDLRNEMLEAAKNQNYEHAASLRDLIIELE 655

Query: 795 S 795
           +
Sbjct: 656 T 656


>gi|225551693|ref|ZP_03772637.1| excinuclease ABC, B subunit [Borrelia sp. SV1]
 gi|225371720|gb|EEH01146.1| excinuclease ABC, B subunit [Borrelia sp. SV1]
          Length = 668

 Score =  598 bits (1543), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 315/667 (47%), Positives = 450/667 (67%), Gaps = 21/667 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I FF ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 2   IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  +E+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIREISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374
           +R  + + R  F + GD +EI+PS  H E  A+R+ +   D +EI E Y ++    +N+ 
Sbjct: 181 ERTLMNLERDKFSIKGDVVEIWPSSEHGE-FAYRICL---DFDEIVEIYRVSSFSKKNLG 236

Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
              +  ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEM
Sbjct: 237 ATNSFTLFAKSYFVIPYKNVLEAIPKISHDLSLQCQYFKDNGKLVEAERLKQRVEYDLEM 296

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L  TG C  IENYS+YL+G +  E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  
Sbjct: 297 LRETGFCSGIENYSKYLSG-STMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHS 355

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK+ L  +GFRLP+ ++NRPL+++E++ L    + VSATPG  E E+   ++V+QIIRPT
Sbjct: 356 RKSNLVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPGVEENEKS-SVVVDQIIRPT 414

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+
Sbjct: 415 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYL 474

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSE+ TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLI
Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI  +
Sbjct: 535 QTIGRAARNSNGLVIMYYDKISVAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNI 594

Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           ++  L  +    N+  D +++     LSKKK    +  L+  +  A ++  FE+A  +RD
Sbjct: 595 LEKEL--NNKNKNVGYDFEKIISGERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRD 649

Query: 789 EIKRLKS 795
           +IK L S
Sbjct: 650 KIKELSS 656


>gi|216264228|ref|ZP_03436220.1| excinuclease ABC, B subunit [Borrelia burgdorferi 156a]
 gi|215980701|gb|EEC21508.1| excinuclease ABC, B subunit [Borrelia burgdorferi 156a]
          Length = 668

 Score =  598 bits (1543), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 317/667 (47%), Positives = 448/667 (67%), Gaps = 21/667 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I FF ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 2   IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374
           +R  + + R  F + GD +EI+PS  H E  A+R+ +   D +EI E Y ++    +N+ 
Sbjct: 181 ERTLMTLERDKFSIKGDIVEIWPSSEHGE-FAYRICL---DFDEIVEIYRVSSFSKKNLG 236

Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
              +  ++A S++V P   +  A+  I  +L ++    +  GRL+EA+RL+QR+ YDLEM
Sbjct: 237 ATNSFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGRLVEAERLKQRVEYDLEM 296

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L  TG C  IENYS+YL+G +  E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  
Sbjct: 297 LRETGFCSGIENYSKYLSG-STMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHS 355

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  +GFRLP+ ++NRPL+++E+  L    + VSATPG  E E+   ++V+QIIRPT
Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPT 414

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+
Sbjct: 415 GLVDPEIITRRSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYL 474

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSE+ TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLI
Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI  +
Sbjct: 535 QTIGRAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNI 594

Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           ++  L  +    N+  D +++     LSKKK    +  L+  +  A ++  FE+A  +RD
Sbjct: 595 LEKEL--NNKNKNVGYDFEKIISGERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRD 649

Query: 789 EIKRLKS 795
           +IK L S
Sbjct: 650 KIKELSS 656


>gi|226320883|ref|ZP_03796435.1| excinuclease ABC, B subunit [Borrelia burgdorferi 29805]
 gi|226233749|gb|EEH32478.1| excinuclease ABC, B subunit [Borrelia burgdorferi 29805]
          Length = 668

 Score =  598 bits (1543), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 317/667 (47%), Positives = 448/667 (67%), Gaps = 21/667 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I FF ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 2   IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374
           +R  + + R  F + GD +EI+PS  H E  A+R+ +   D +EI E Y ++    +N+ 
Sbjct: 181 ERTLMNLERDKFSIKGDIVEIWPSSEHGE-FAYRICL---DFDEIVEIYRVSSFSKKNLG 236

Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
              +  ++A S++V P   +  A+  I  +L ++    +  GRL+EA+RL+QR+ YDLEM
Sbjct: 237 ATNSFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGRLVEAERLKQRVEYDLEM 296

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L  TG C  IENYS+YL+G +  E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  
Sbjct: 297 LRETGFCSGIENYSKYLSG-STMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHS 355

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  +GFRLP+ ++NRPL+++E+  L    + VSATPG  E E+   ++V+QIIRPT
Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFESLINQVVFVSATPGVEENEKS-SVVVDQIIRPT 414

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+
Sbjct: 415 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYL 474

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSE+ TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLI
Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI  +
Sbjct: 535 QTIGRAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNI 594

Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           ++  L  +    N+  D +++     LSKKK    +  L+  +  A ++  FE+A  +RD
Sbjct: 595 LEKEL--NNKNKNVGYDFEKIISGERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRD 649

Query: 789 EIKRLKS 795
           +IK L S
Sbjct: 650 KIKELSS 656


>gi|225549368|ref|ZP_03770340.1| excinuclease ABC, B subunit [Borrelia burgdorferi 94a]
 gi|225369996|gb|EEG99437.1| excinuclease ABC, B subunit [Borrelia burgdorferi 94a]
          Length = 668

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 317/667 (47%), Positives = 448/667 (67%), Gaps = 21/667 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I FF ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 2   IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374
           +R  + + R  F + GD +EI+PS  H E  A+R+ +   D +EI E Y ++    +N+ 
Sbjct: 181 ERTLMTLERDKFSIKGDIVEIWPSSEHGE-FAYRICL---DFDEIVEIYRVSSFSKKNLG 236

Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
              +  ++A S++V P   +  A+  I  +L ++    +  GRL+EA+RL+QR+ YDLEM
Sbjct: 237 ATNSFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGRLVEAERLKQRVEYDLEM 296

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L  TG C  IENYS+YL+G +  E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  
Sbjct: 297 LRETGFCSGIENYSKYLSG-STMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHS 355

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  +GFRLP+ ++NRPL+++E+  L    + VSATPG  E E+   ++V+QIIRPT
Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPT 414

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+
Sbjct: 415 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYL 474

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSE+ TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLI
Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI  +
Sbjct: 535 QTIGRAARNSNGFVIMYYDKISLAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNI 594

Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           ++  L  +    N+  D +++     LSKKK    +  L+  +  A ++  FE+A  +RD
Sbjct: 595 LEKEL--NNKNKNVGYDFEKIISGERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRD 649

Query: 789 EIKRLKS 795
           +IK L S
Sbjct: 650 KIKELSS 656


>gi|221217593|ref|ZP_03589062.1| excinuclease ABC, B subunit [Borrelia burgdorferi 72a]
 gi|221192539|gb|EEE18757.1| excinuclease ABC, B subunit [Borrelia burgdorferi 72a]
          Length = 668

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 316/667 (47%), Positives = 448/667 (67%), Gaps = 21/667 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I FF ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 2   IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374
           +R  + + R  F + GD +EI+PS  H E  A+R+ +   D +EI E Y ++    +N+ 
Sbjct: 181 ERTLMTLERDKFSIKGDIVEIWPSSEHGE-FAYRICL---DFDEIVEIYRVSSFSKKNLG 236

Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
              +  ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEM
Sbjct: 237 ATNSFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKNNGKLVEAERLKQRVEYDLEM 296

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L  TG C  IENYS+YL+G +  E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  
Sbjct: 297 LRETGFCSGIENYSKYLSG-STMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHS 355

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  +GFRLP+ ++NRPL+++E+  L    + VSATPG  E E+   ++V+QIIRPT
Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPT 414

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+
Sbjct: 415 GLVDPEIITRRSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYL 474

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSE+ TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLI
Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI  +
Sbjct: 535 QTIGRAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNI 594

Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           ++  L  +    N+  D +++     LSKKK    +  L+  +  A ++  FE+A  +RD
Sbjct: 595 LEKEL--NNKNKNVGYDFEKIISGERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRD 649

Query: 789 EIKRLKS 795
           +IK L S
Sbjct: 650 KIKELSS 656


>gi|224531992|ref|ZP_03672624.1| excinuclease ABC, B subunit [Borrelia valaisiana VS116]
 gi|224511457|gb|EEF81863.1| excinuclease ABC, B subunit [Borrelia valaisiana VS116]
          Length = 664

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 315/662 (47%), Positives = 442/662 (66%), Gaps = 15/662 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I FF ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I  + RPA+
Sbjct: 2   IDFF-LKSEYLPAGDQPKAIKEIKNSILLGNKYQTLKGVTGSGKTFTIANIIRDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           +R  I + R  F + GD +EI+PS  H E  A+R+ +   D +EI + Y +T    +N+ 
Sbjct: 181 ERTLINLERDKFSIKGDIVEIWPSSEHGE-FAYRICL---DFDEIVKIYRITSFSKKNLG 236

Query: 376 T---IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           T     ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEM
Sbjct: 237 TTNSFTLFAKSYFVIPYKNVLEAIPKISHDLDLQCQYFKDNGKLVEAERLKQRVGYDLEM 296

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L  TG C  IENYS+YL+G   G P   LF++  +D LLFVDESHVT+PQ  GMY GD+ 
Sbjct: 297 LRETGFCSGIENYSKYLSGSTMGRPY-CLFDFFSKDYLLFVDESHVTLPQFRGMYNGDYS 355

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  +GFRLP+ ++NRPL+++E++ L    + VSATPG  E E+   ++V+QIIRPT
Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPGFEENEKS-SVVVDQIIRPT 414

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    ++ +Y+
Sbjct: 415 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVTLGVKAKYL 474

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSE+ TLER+E+I  LR  + DV+VGINLLREGLDIPE  LV ILDADK GFLRS TSLI
Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVVILDADKVGFLRSTTSLI 534

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN N  VI+Y D I+ ++  AI+ET RRR+ Q+++NKK+NI P+++ +KI  +
Sbjct: 535 QTIGRAARNSNGLVIMYYDKISVAMHEAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNI 594

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIK 791
           ++  L  +    NIS D ++    K+  K  L   L+  +  A ++  FE+A  +RD+IK
Sbjct: 595 LEKEL--NNKYKNISYDFEKNISGKRLSKKKLINKLKFDLEEAVNDERFEDAIVLRDKIK 652

Query: 792 RL 793
            L
Sbjct: 653 EL 654


>gi|288927579|ref|ZP_06421426.1| excinuclease ABC subunit B [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330413|gb|EFC68997.1| excinuclease ABC subunit B [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 685

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 319/670 (47%), Positives = 451/670 (67%), Gaps = 17/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL +G+   +K Q+LLGVTGSGKTFTMA VI     P +V++
Sbjct: 11  FKLTSKYKPTGDQPEAIKQLTEGLERGDKAQVLLGVTGSGKTFTMANVIAQHNVPTLVLS 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 71  HNKTLAAQLYEEMKGFFPNNAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDEIDKLRL 130

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            A  +LL  R D +VVSSVSCIYG+G   +    I+ L  G  +++ E L  LV   Y R
Sbjct: 131 RAVSALLSGRKDVVVVSSVSCIYGMGGPTAMESGIISLSKGQRIDRNEFLRKLVDSLYVR 190

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD++++  ++  D   R++ + ++I+ I E   LT  +I      KI
Sbjct: 191 NDIDLQRGNFRVKGDTVDVAMAY-SDNLLRITWWDDEIDSIEEVDSLTYHRIERFNDYKI 249

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  ++    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 250 YPANLFVTTKDQTEHAIRCIQDDLVKQIDFFNELGDGIKAQRIKERVEYDMEMMKELGHC 309

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PG+ P  L ++ P+D L+ +DESHV++PQ+ GMY GD  RK  L E
Sbjct: 310 SGIENYSRYFDGRQPGQRPYCLLDFFPKDYLMIIDESHVSVPQLGGMYGGDRARKQNLVE 369

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLP+  DNRPLRFEE++ L    I VSATP  +EL + +G++VEQ+IRPTGL+DP +
Sbjct: 370 FGFRLPAAFDNRPLRFEEFHNLINQVIYVSATPADYELGEAEGVVVEQLIRPTGLLDPEI 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R +  Q++D+  EI   + +  R+L+T LTKRMAE+LTEYL +  ++  Y+HS+V TL
Sbjct: 430 VVRPSENQIDDLLAEILERSDKNERVLVTTLTKRMAEELTEYLLDHGVKTNYIHSDVATL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+ I+  LR G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 490 DRVRIMNALRAGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--DPIL 737
           RNVN KVI+YADTIT+S+Q  IDET RRR  Q+++N +H+I PQ + + I   +  +   
Sbjct: 550 RNVNGKVIMYADTITQSMQRTIDETARRRTIQMQYNAEHHITPQQIVKDIKGALTGNTTT 609

Query: 738 LEDA------ATTNISIDAQQLS-------LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           +E A      A   +  DA   +       +++++ +  + +    M  AA  L+F +AA
Sbjct: 610 VETAKGYRSQAGGYVEPDAVAFAADPIVERMTRQQLEKSIANTTALMKQAAKELDFIQAA 669

Query: 785 RIRDEIKRLK 794
           + RDEI RL+
Sbjct: 670 QYRDEIARLQ 679


>gi|312148059|gb|ADQ30718.1| excinuclease ABC, B subunit [Borrelia burgdorferi JD1]
          Length = 668

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 316/667 (47%), Positives = 447/667 (67%), Gaps = 21/667 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I FF ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 2   IDFF-LKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV- 374
           +R  + + R  F + GD +EI+PS  H E  A+R+ +   D +EI E Y ++    +N+ 
Sbjct: 181 ERTLMTLERDKFSIKGDIVEIWPSSEHGE-FAYRICL---DFDEIVEIYRVSSFSKKNLG 236

Query: 375 --ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
              +  ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEM
Sbjct: 237 ATNSFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDSGKLVEAERLKQRVEYDLEM 296

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L  TG C  IENYS+YL+G +  E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  
Sbjct: 297 LRETGFCSGIENYSKYLSG-STMERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHS 355

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  +GFRLP+ ++NRPL+++E+  L    + VSATPG  E E+   ++V+QIIRPT
Sbjct: 356 RKLNLVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPT 414

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+
Sbjct: 415 GLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYL 474

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSE+ TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLI
Sbjct: 475 HSELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLI 534

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN N  VI+Y D I+ +++ AI ET RRR+ Q+++N+K+NI P+++ +KI  +
Sbjct: 535 QTIGRAARNSNGLVIMYYDKISLAMREAIGETNRRRQIQIDYNEKNNITPKTIVKKIQNI 594

Query: 733 IDPILLEDAATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           ++  L  +    N+  D +++     LSKKK    +  L+  +  A ++  FE+A  +RD
Sbjct: 595 LEKEL--NNKNKNVGYDFEKIISGERLSKKK---LIDKLKFDLEEAVNDERFEDAIVLRD 649

Query: 789 EIKRLKS 795
           +IK L S
Sbjct: 650 KIKELSS 656


>gi|149189665|ref|ZP_01867947.1| excinuclease ABC subunit B [Vibrio shilonii AK1]
 gi|148836477|gb|EDL53432.1| excinuclease ABC subunit B [Vibrio shilonii AK1]
          Length = 658

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 291/594 (48%), Positives = 414/594 (69%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP AIA+L+ GI + +  Q L GVTGSGKTFTMA +I  ++RP +++A
Sbjct: 6   FILHSAYPPSGDQPEAIARLISGIEAGKSHQTLQGVTGSGKTFTMANIIHRLKRPTLILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA+QLYSE  +FFP NAVEYFVSYYDY+QPE Y+P +D +I K+S+INEQ++R+R 
Sbjct: 66  HNKTLASQLYSEMCHFFPENAVEYFVSYYDYFQPEVYIPGSDRFIRKDSAINEQLERLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SL+ER D IVV+SVS +YG+G  ++Y  + + L +G+++++ +L   L + QY   
Sbjct: 126 SATKSLIERRDVIVVASVSSVYGLGDPQAYRDLQISLAVGEALDKADLAERLARLQYTLT 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + R  FR+ GD I++FP+     A R+++    I+ +    P+ G  +++    KI 
Sbjct: 186 EPKLERAGFRIRGDKIDVFPADSAQDAIRITLNNGVIQHLDWVDPIAGTLLKSCTEYKIS 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y +    +  A + I+ E++ R+ EL +E RL EA RL +R  +D+EM++  G C 
Sbjct: 246 PKTLYASSPQKVRKASELIRIEMEQRVKELNEENRLTEAARLYERCMHDIEMMQQYGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+ YL  R+P  PP TL +Y+P+D L+F+DESHV +PQIS M + D  RK TL +Y
Sbjct: 306 GIENYACYLNERDPELPPTTLMDYLPKDGLVFIDESHVMVPQISAMSKSDLSRKDTLIDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS ++NRPL F E+   +P TI VSATPG +E+++  G++VEQIIRPTGL+DP VE
Sbjct: 366 GFRLPSALNNRPLTFNEFEKAKPQTIFVSATPGKYEVQRSGGVVVEQIIRPTGLLDPEVE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +   +ED+  EI        R+L+T LTK  AE L +++ E+ IRVRY+HS++KT E
Sbjct: 426 VRPSANNMEDLLKEIRQRTSNDERVLVTTLTKVSAESLNDHMAEQGIRVRYLHSDIKTSE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II  LR G+FDVL+GINLLREGLDIPE  LVAILDAD  GFLRS  +LIQ IGRAAR
Sbjct: 486 RVDIINGLRAGEFDVLIGINLLREGLDIPEASLVAILDADHAGFLRSVEALIQIIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           N N K ILYAD IT +++ AIDE+ +RR++Q  +N+ + I P + + K+   ++
Sbjct: 546 NANGKAILYADRITPAMKQAIDESLQRRKRQQVYNQANAIVPATSRRKVASAME 599


>gi|308189817|ref|YP_003922748.1| UvrABC system protein B [Mycoplasma fermentans JER]
 gi|319777032|ref|YP_004136683.1| uvrabc system protein b [Mycoplasma fermentans M64]
 gi|238809815|dbj|BAH69605.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624559|gb|ADN68864.1| UvrABC system protein B [Mycoplasma fermentans JER]
 gi|318038107|gb|ADV34306.1| UvrABC system protein B [Mycoplasma fermentans M64]
          Length = 669

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 295/662 (44%), Positives = 431/662 (65%), Gaps = 3/662 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ + Y P+GDQP AI +L++ I    + Q+L GVTGSGKTFT+A VI+   RP +
Sbjct: 1   MSIFKLISPYKPAGDQPEAIKELVENIKDNMQHQVLKGVTGSGKTFTIANVIKEFDRPVL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LA+QLYSE K FFPHN VEY+VSY+DYY+PEAY+P +DTYI+K+S  N+ +D 
Sbjct: 61  VLSHNKTLASQLYSELKGFFPHNRVEYYVSYFDYYRPEAYIPSSDTYIDKQSQNNKDLDA 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SA  ++L RND I+V+SVS IYG  +   Y   +  +++G  ++++E    LV++ Y
Sbjct: 121 MRMSAMNAVLTRNDTIIVASVSAIYGALNPSEYYASVFPIEVGMQIKRQEFFKKLVQRNY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR  I +  GTF   GD++ I P+  ++   RV  FG++I+ I+   P+T + I      
Sbjct: 181 KRNQIDLELGTFSAKGDAVYIQPADSDEYQIRVDFFGDEIDSIATCDPITKEVIERFSHY 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+    Y   R  ++ A   I  EL  R+   +   +L+EAQR+++R+  D++ L   G
Sbjct: 241 TIFPGDAYTVDRSVIDEACDKILVELDERIKYFKANNQLIEAQRIQERVEKDVDSLREFG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIP-EDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
            C  IENY+RY+  R  GE P TL +Y   +  LLF+DESH+ IPQ++GMY GD+ RK  
Sbjct: 301 MCPGIENYARYMDRREAGERPYTLLDYFKGKKPLLFIDESHMMIPQLNGMYHGDYSRKKN 360

Query: 497 LAEYGFRLPSCMDNRPLRFEEW-NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           L +YGFRLPS +DNRPL F+E+ N     T+ +SATP  +EL++  G++ +  +RPTGL+
Sbjct: 361 LVDYGFRLPSALDNRPLLFKEFENEFDFQTVYISATPDDYELDKTHGLLTKLFVRPTGLL 420

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR ++ Q+ED+YDE+     +  R L+   TKR+AE+L+ Y  E+N ++ Y+HSE
Sbjct: 421 DPKIEIRLSKNQIEDIYDELQRQKDKNERTLILTTTKRLAEELSRYFLEKNEKIAYIHSE 480

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             T ER EI+R LR G +D ++GINLLREG+D+PE  L+ +LDADKEGF+RS  SLIQ  
Sbjct: 481 HNTFERNEILRKLRKGVYDTVIGINLLREGVDLPEVSLIMVLDADKEGFMRSTKSLIQIS 540

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN N +VI YAD  TKS+Q  I++   +R+ Q+ +NKKHNI P+++ + I E I  
Sbjct: 541 GRAARNANGRVIFYADKTTKSMQECIEDNEIKRKMQIAYNKKHNITPKTIIKPIAEPIHG 600

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             +E         + +  + S KK K  L K LR+QM+ AA  L++E A  +RD I  L+
Sbjct: 601 EGIEGEIEFFFKNEKRNQTQSGKKAKEELIKRLREQMNQAAKELDYERAIELRDIILELQ 660

Query: 795 SS 796
           + 
Sbjct: 661 AG 662


>gi|119953614|ref|YP_945824.1| excinuclease ABC subunit B [Borrelia turicatae 91E135]
 gi|119862385|gb|AAX18153.1| excinuclease ABC subunit B [Borrelia turicatae 91E135]
          Length = 653

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 304/656 (46%), Positives = 436/656 (66%), Gaps = 10/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P+GDQ  AI ++ + I    K Q L GVTGSGKTFT+A +I  ++RPA++++
Sbjct: 3   FCLRSDYSPAGDQSKAIREIEESILLDNKYQTLKGVTGSGKTFTIANIIRNLERPALIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPE+YVP  D YIEKE++INE I+  R 
Sbjct: 63  HNKTLAAQLYREFKDFFPDNAVEYFVSYYDYYQPESYVPSKDLYIEKEATINEDIEIKRI 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
               SL  R D IVV++VS IY +GS E +        +G  +  KE+    VK QY+R 
Sbjct: 123 RTVTSLSRRRDVIVVATVSSIYALGSPEFFKNAAHAFFVGQKISIKEIADIFVKLQYERT 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLE-DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            + +    F + GD IE++PS+   D A+++ +  ++I  IS   PLT + +   +   +
Sbjct: 183 LMNLEHDKFSIKGDVIEVWPSNEHGDFAYKIYLDFDEIVRISRINPLTKKILGVTDEFTL 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +A S++V P   +  A+  I+ +L+++    ++ G+ +EA+RL+QR+ YD+EML  TGSC
Sbjct: 243 FAKSYFVIPYENILDALSKIQVDLEIQYHSFKENGKFVEAERLKQRVEYDIEMLRETGSC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           Q IENYS+Y +  +  + P  LF++ P+D LLF+DESHVT+PQ  GMY GD+ RK  L  
Sbjct: 303 QGIENYSKYFSD-SEMDRPYCLFDFFPKDYLLFIDESHVTLPQFRGMYNGDYSRKLNLVN 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ--GIIVEQIIRPTGLVDP 557
           +GFRLPS + NRPL++ E+  L    + VSATPG   LE+C+   +I EQIIRPTGL+DP
Sbjct: 362 FGFRLPSALANRPLKYHEFESLINQVVFVSATPG---LEECEKSSVIAEQIIRPTGLIDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R +  Q+ED+Y+EI        ++L+T LTK+MAEDLT+YL   +I+ RY+H+E  
Sbjct: 419 EIILRVSDGQMEDLYNEIQKRVALNEKVLITTLTKKMAEDLTDYLLSLDIKARYLHAEFN 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER++II  LR  + DV+VGINLLREGLDIPE  LV ILDADK GFLRS TSLIQ IGR
Sbjct: 479 AIERVDIITSLRKSEIDVIVGINLLREGLDIPEVSLVIILDADKVGFLRSTTSLIQMIGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N  VI+Y D ++ +++ AIDET RRR  Q+E+NKK+NI P+++ +K+  +++  L
Sbjct: 539 AARNSNGCVIMYYDHVSCAMREAIDETNRRRNIQIEYNKKNNIVPRTIIKKVQNILEKEL 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             +    +I    + +S  K   K  +  L+ ++  A  +  FE+A  +RD+I+ L
Sbjct: 599 KNETVDYDI---GKIISDDKLSKKDLIIKLKFKLEEAVCDERFEDAIFLRDKIREL 651


>gi|126661654|ref|ZP_01732670.1| excinuclease ABC subunit B [Cyanothece sp. CCY0110]
 gi|126617061|gb|EAZ87914.1| excinuclease ABC subunit B [Cyanothece sp. CCY0110]
          Length = 502

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 283/500 (56%), Positives = 373/500 (74%), Gaps = 1/500 (0%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +PA+V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN+
Sbjct: 4   KPALVLAHNKTLAAQLCNELRQFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKSASIND 63

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +ID +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V L++G  V Q++LL  LV
Sbjct: 64  EIDMLRHSATRSLFERKDVIVVASISCIYGLGMPAEYLKASVPLEVGKEVNQRQLLRDLV 123

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ + +
Sbjct: 124 TVQYSRNDLDLQRGRFRVKGDVLEIVPAY-EDRVVRVEFFGDEIDAIRYLDPVTGEILNS 182

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           ++ I IY   H+V P   L  A + I+ EL+ +++ LEK G+LLEAQR++QR  YDLE+L
Sbjct: 183 LKNINIYPARHFVIPEEQLEAACQAIEIELQEQILNLEKAGKLLEAQRIDQRTRYDLELL 242

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
              G C  +ENYSR+L GR PG PP  L +Y P+D LL VDESHVT+PQI GMY GD  R
Sbjct: 243 REVGYCNGVENYSRHLAGRKPGSPPECLVDYFPKDWLLIVDESHVTVPQIRGMYNGDQAR 302

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K  L ++GFRLPS  DNRPL+ +E+       I VSATPG+WE+EQ +  ++EQIIRPTG
Sbjct: 303 KKVLIDHGFRLPSAADNRPLKSDEFWDKVNQCIFVSATPGNWEIEQSEDRVIEQIIRPTG 362

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           ++DP + +RS   QV+D+  EI    ++  R+L+T LTKRMAEDLTEY  ER+++V+Y+H
Sbjct: 363 VLDPEIFVRSTEGQVDDLLGEIKERVKREERVLITTLTKRMAEDLTEYFQERDVKVQYLH 422

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+K++ERIEI++ LR G+FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQ
Sbjct: 423 SEIKSIERIEILQALRNGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAEKSLIQ 482

Query: 674 TIGRAARNVNSKVILYADTI 693
           TIGRAAR+VN + ILY D +
Sbjct: 483 TIGRAARHVNGQAILYGDNL 502


>gi|260911826|ref|ZP_05918393.1| excision endonuclease subunit UvrB [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634037|gb|EEX52160.1| excision endonuclease subunit UvrB [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 677

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 323/677 (47%), Positives = 451/677 (66%), Gaps = 31/677 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL +G+   +  Q+LLGVTGSGKTFTMA VI     P +V++
Sbjct: 3   FKLTSKYKPTGDQPEAIRQLTEGLDRGDMSQVLLGVTGSGKTFTMANVIAQHNVPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPDNAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            A  +LL  R D +VVSSVSCIYG+G   +    I+ L  G  +++ E L  LV   Y R
Sbjct: 123 RAVSALLSGRKDVVVVSSVSCIYGMGGPTAMESGIISLSKGQRIDRNEFLRKLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD++++  ++  D   R++ + ++I+ I E   LT  +I +    KI
Sbjct: 183 NDIDLQRGNFRVKGDTVDVAMAY-SDNLLRITWWDDEIDSIEEVDSLTYHRIESFNDYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  ++    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTTKDQTERAIRCIQDDLVSQIDFFNELGDGIKAQRIKERVEYDMEMMKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PG+ P  L ++ P+D L+ +DESHV++PQ+ GMY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRQPGQRPYCLLDFFPKDYLMIIDESHVSVPQLGGMYGGDRARKQNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLP+  DNRPLRFEE++ L    I VSATP  +EL + +G++VEQ+IRPTGL+DP +
Sbjct: 362 FGFRLPAAFDNRPLRFEEFHSLINQVIYVSATPADYELGEAEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R +  Q++D+  EI   +++  R+L+T LTKRMAE+LTEYL +  ++  Y+HS+V TL
Sbjct: 422 IVRPSENQIDDLLAEILERSEKNERVLVTTLTKRMAEELTEYLLDHGVKTNYIHSDVATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+ I+  LR G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVRIMNALRAGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV------- 732
           RNVN KVI+YADTIT+S+Q  IDET RRR  Q+++N  H+I PQ + + I          
Sbjct: 542 RNVNGKVIMYADTITQSMQRTIDETARRRTIQMQYNADHHIIPQQIVKDIKGALTGNAPT 601

Query: 733 --------------IDPILLEDAATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
                         ++P  +  AA   +  +  QQL    +K  A+  +L KQ   AA +
Sbjct: 602 VVTSKSYRSQEGGYVEPDAVAFAADPIVERMTRQQL----EKSIANTTALMKQ---AAKD 654

Query: 778 LNFEEAARIRDEIKRLK 794
           L+F +AA+ RDEI RL+
Sbjct: 655 LDFIQAAQYRDEIARLQ 671


>gi|203284737|ref|YP_002222477.1| excinuclease ABC, subunit B [Borrelia duttonii Ly]
 gi|201084180|gb|ACH93771.1| excinuclease ABC, subunit B [Borrelia duttonii Ly]
          Length = 654

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 304/654 (46%), Positives = 429/654 (65%), Gaps = 6/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P+GDQP AI ++ + I    + Q L GVTGSGKTFT+A +I  ++RP+++++
Sbjct: 3   FCLKSDYFPAGDQPKAIREIKESILRNNRYQTLKGVTGSGKTFTIANIIRDLERPSLIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPE+YVP  D YIEKE++INE I+  R 
Sbjct: 63  HNKTLAAQLYREFKDFFPDNAVEYFVSYYDYYQPESYVPSKDLYIEKEATINEDIEIKRI 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
               SL  R D IVV++VS IY +GS   +        +G  +  KE+    VK QY+R 
Sbjct: 123 RTVTSLSRRRDVIVVATVSSIYALGSPIFFKSAANVFFVGQKISIKEIADVFVKLQYERT 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLE-DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
              +    F + GD +EI+PS+   D A+R+ +  + I +I+   PLT +K+       +
Sbjct: 183 FTNLEHDKFSIKGDVVEIWPSNEHGDFAYRIYLDFDKIMQINRISPLTKKKLGFANEFTL 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +A S++V P   +  A+  I+ +L+M+    ++  +L+EA+RL+QR+ YD+EML  TGSC
Sbjct: 243 FAKSYFVIPYEKILNALPEIQVDLEMQYRYFQENNKLVEAERLKQRVKYDIEMLRETGSC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           Q IENYS Y  G +  + P  LF++ PED LLF+DESHVT+PQ  GMY GD+ RK  L  
Sbjct: 303 QGIENYSAYFGG-DEIDRPYCLFDFFPEDYLLFIDESHVTLPQFRGMYNGDYSRKLNLVN 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS + NRPL++ E+  L    + VSATPG  E E+   +IVEQIIRPTGL+DP +
Sbjct: 362 FGFRLPSALKNRPLKYYEFESLINQAVFVSATPGLEESEKS-SVIVEQIIRPTGLIDPEI 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R +  Q+ED+Y EI        +IL+T LTK+M+EDLT+YL    I+ RY+H+E   +
Sbjct: 421 ILRPSDGQIEDIYSEIQRRVVLNEKILITTLTKKMSEDLTDYLLTLGIKARYLHAEFNAI 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+ II  LR  + DV+VGINLLREGLDIPE  LV ILDADK GFLRS +SLIQ IGRAA
Sbjct: 481 ERVNIITSLRKSEIDVIVGINLLREGLDIPEVSLVIILDADKVGFLRSASSLIQIIGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN +  VI+Y D I+ ++Q AI+ET RRR  Q+E+NK +NI P+++ +K+  +++     
Sbjct: 541 RNSHGCVIMYYDQISCAMQEAIEETRRRRNIQIEYNKANNIVPKTIVKKVQSILEKEFKN 600

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +    N+       +LS++     LK    +++ A ++  FE+A  +RD+IK L
Sbjct: 601 ETLDYNVEKIISDNNLSREDLIIKLKF---ELNEAVEDERFEDAIFLRDKIKEL 651


>gi|203288263|ref|YP_002223278.1| excinuclease ABC, subunit B [Borrelia recurrentis A1]
 gi|201085483|gb|ACH95057.1| excinuclease ABC, subunit B [Borrelia recurrentis A1]
          Length = 654

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 303/654 (46%), Positives = 428/654 (65%), Gaps = 6/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P+GDQP AI ++ + I    + Q L GVTGSGKTFT+A +I  ++RP+++++
Sbjct: 3   FCLKSDYFPAGDQPKAIREIKESILRNNRYQTLKGVTGSGKTFTIANIIRDLERPSLIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPE+YVP  D YIEKE++INE I+  R 
Sbjct: 63  HNKTLAAQLYREFKDFFPDNAVEYFVSYYDYYQPESYVPSKDLYIEKEATINEDIEIKRI 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
               SL  R D IVV++VS IY +GS   +        +G  +  KE+    VK QY+R 
Sbjct: 123 RTVTSLSRRRDVIVVATVSSIYALGSPIFFKSAANVFFVGQKISIKEIADVFVKLQYERT 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLE-DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
              +    F + GD +EI+PS+   D A+R+ +  + I +I+   PLT +K+       +
Sbjct: 183 FTNLEHDKFSIKGDVVEIWPSNEHGDFAYRIYLDFDKIMQINRISPLTKKKLGFANEFTL 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +A S++V P   +  A+  I+ +L+M+    ++  +L+EA+RL+QR+ YD+EML  TGSC
Sbjct: 243 FAKSYFVIPYEKILNALPEIQVDLEMQYRYFQENNKLVEAERLKQRVKYDIEMLRETGSC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           Q IENYS Y  G +  + P  LF++ PED LLF+DESHVT+PQ  GMY GD+ RK  L  
Sbjct: 303 QGIENYSAYFGG-DEIDRPYCLFDFFPEDYLLFIDESHVTLPQFRGMYNGDYSRKLNLVN 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS + NRPL++ E+  L    + VSATPG  E ++   +IVEQIIRPTGLVDP +
Sbjct: 362 FGFRLPSALKNRPLKYYEFESLINQAVFVSATPGLEESKKS-SVIVEQIIRPTGLVDPEI 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R +  Q+ED+Y EI        +IL+T LTK+M+EDLT+YL    I+ RY+H+E   +
Sbjct: 421 ILRPSDGQIEDIYSEIQRRVVLNEKILITTLTKKMSEDLTDYLLTLGIKARYLHAEFNAI 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+ II  LR  + DV+VGINLLREGLDIPE  LV ILDADK GFLRS +SLIQ IGRAA
Sbjct: 481 ERVNIITSLRKSEIDVIVGINLLREGLDIPEVSLVIILDADKVGFLRSASSLIQIIGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN +  VI+Y D I+ ++Q AI++T RRR  Q+E+NK +NI P+++ +K+  +++     
Sbjct: 541 RNSHGCVIMYYDQISCAMQEAIEKTRRRRNIQIEYNKANNIVPKTIVKKVQSILEKEFKN 600

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                N+       +LS++     LK    +++ A ++  FE+A  +RD+IK L
Sbjct: 601 KTLDYNVEKIISDNNLSREDLIIKLKF---ELNEAVEDERFEDAIFLRDKIKEL 651


>gi|240047166|ref|YP_002960554.1| excinuclease ABC subunit B [Mycoplasma conjunctivae HRC/581]
 gi|239984738|emb|CAT04712.1| UvrABC system protein B [Mycoplasma conjunctivae]
          Length = 654

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 292/655 (44%), Positives = 431/655 (65%), Gaps = 6/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI+ L+ GI + ++ Q+LLGVTGSGKTFTMA VI  + RP +V++
Sbjct: 2   FKLVSKYAPSGDQPKAISSLVNGIKNNKENQVLLGVTGSGKTFTMANVISQINRPVLVLS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA+QLYSEFK FFP N VEYFVS +D+Y+PEAY+P  D Y++K S  N  ++ MR 
Sbjct: 62  HNKTLASQLYSEFKEFFPENRVEYFVSNFDFYRPEAYLPGKDIYVDKTSKTNMDLEAMRM 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +L  RND IVVSSV+ IYG  +   Y +  + ++    ++ + L  +LVK  Y+R 
Sbjct: 122 SALNALSMRNDTIVVSSVAAIYGALNPTEYKEGFLNIEANQKIKIQNLAINLVKIGYQRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I +  G F + GD +E+ P+  +    R+S FG+ IE I   +P+  +  R+     IY
Sbjct: 182 NIDLKPGNFSIKGDILELAPAWDDSFNIRISFFGDLIESIDTIHPIEKKLFRSFHAYTIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S Y   R T+  A+K I+ EL+ RL   E EG+L+E QRLE+R+  D++ L   G C 
Sbjct: 242 PASAYTVKRDTITQAIKTIEIELEYRLKYFENEGKLVEKQRLEERVNNDIDSLREFGFCS 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R++ GR  GE P TL +Y+P+D+L+F+DESH+ +PQ++GMY GD  RK  L +Y
Sbjct: 302 GIENYARHIDGRQEGEKPYTLLDYLPKDALIFIDESHIMVPQLNGMYEGDRSRKTNLVDY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       I VSATPG +EL+   G ++ QIIRPTGL+DP +E
Sbjct: 362 GFRLPSALDNRPLKFKEFEKYEQQKIFVSATPGQYELDLVDGEVIPQIIRPTGLLDPIIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY-ERNIRVRYMHSEVKTL 619
           +     Q+E +Y+ +     +  R L+   TKR++E++++YL  E+  +V Y+HS+  T 
Sbjct: 422 VVDKTNQMEKIYNYLQQQKAKDERSLILTTTKRLSEEISKYLQEEKKQKVYYIHSDFTTF 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EI+  LR G +D ++GINLLREG+D+PE  L+ +LDAD E F RS++SLIQ  GRAA
Sbjct: 482 ERDEILIKLRKGVYDAVIGINLLREGVDLPEVSLILVLDADHESFFRSRSSLIQIAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN + KVI +AD I++S++  I++   +RE Q+++N ++NI P+++ + I + ++P    
Sbjct: 542 RNDHGKVIFFADKISRSMKEVIEDNKNKREIQIKYNIENNITPKTIIKPIPQRLNP---- 597

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                +IS   ++   +KK+ K+H++ LR +M  AA N NFE A  IRD I  L+
Sbjct: 598 -KTEMSISRIIKKDKGNKKEIKSHIEDLRNEMKKAAANHNFELAIEIRDLIAELE 651


>gi|291320334|ref|YP_003515596.1| UvrABC system protein B [Mycoplasma agalactiae]
 gi|290752667|emb|CBH40640.1| UvrABC system protein B [Mycoplasma agalactiae]
          Length = 669

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 297/659 (45%), Positives = 422/659 (64%), Gaps = 8/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L++GI +  K Q+L GVTGSGKTFT+A VI    RP +V++
Sbjct: 4   FKLHSSYAPAGDQPKAINELVEGIKNNAKEQVLQGVTGSGKTFTIANVINQFNRPVLVLS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA+QLY+E + FFP N VEYFVSY+DYY+PEAY+P +D+YI+K S  N +ID MR 
Sbjct: 64  HNKTLASQLYTELRGFFPENKVEYFVSYFDYYRPEAYIPSSDSYIDKTSKRNAEIDSMRM 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  S+L RND IVV+SVS IYG  +   Y    + +  G  + + + + SL+K+ Y R 
Sbjct: 124 SAVNSILSRNDTIVVASVSAIYGALNPYEYENNFITIHKGQKISRNDFIRSLIKRNYFRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+    G+F V GD + I P +      RV  FG++IE I   +P+T +   + +   ++
Sbjct: 184 DVNSELGSFAVKGDLVLIQPVYDNSFMIRVDFFGDEIESIKTMHPITKEVFASYDEFLLF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               Y      L   ++  K EL+ R+   +K  RLLEAQR+++R+  DL+ L   G+C 
Sbjct: 244 PGDAYTVNNDILKQTVELAKIELEERIAYFKKNNRLLEAQRIKERVERDLDSLAEFGTCP 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPE-DSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
            IENYS YL  R  G+ P TL +Y  + + ++F+DESH+ IPQ+  M++GD  RK TL +
Sbjct: 304 GIENYSMYLDNRTFGQRPYTLLDYFHDKNPIVFIDESHMMIPQLRAMFKGDRSRKQTLVD 363

Query: 500 YGFRLPSCMDNRPLRFEEW-NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           YGFRLPS +DNRPL FEE+ N      I +SATP  +EL++  G++    +RPTGL++P 
Sbjct: 364 YGFRLPSALDNRPLTFEEFENSFDFQKIYISATPDEYELDKTHGVVTTLFVRPTGLLNPS 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R A+ Q+E++YDE+    ++G R L+   TK +AE+LT Y  E+N ++ Y+HSE KT
Sbjct: 424 IEVRPAKGQIENIYDELQKQKEKGERTLILTTTKSLAEELTRYFMEKNEKIAYIHSEHKT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER EI+R LR G +D +VGINLLREG+D+PE  L+ +LDAD E F RS  SLIQ  GRA
Sbjct: 484 FERNEILRKLRKGIYDCVVGINLLREGIDLPEVSLIMVLDADNESFFRSTRSLIQITGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN N +VI YAD+++KS+Q  I + +  R+ Q E+N KHNI P+++ + I E I    +
Sbjct: 544 ARNSNGRVIFYADSVSKSMQETILQNSEIRQIQEEYNLKHNIVPKTIIKPIPEPIHNQKM 603

Query: 739 EDAAT---TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            DA +    N S   Q   LSK +    ++ LRKQM  AA  L++E A  IRD I  L+
Sbjct: 604 ADAISFYFKNSSSKNQDDKLSKDE---LIEKLRKQMEQAAKELDYERAMEIRDIIIELR 659


>gi|148377644|ref|YP_001256520.1| excinuclease ABC subunit B [Mycoplasma agalactiae PG2]
 gi|148291690|emb|CAL59076.1| UvrABC system protein B [Mycoplasma agalactiae PG2]
          Length = 669

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 297/659 (45%), Positives = 420/659 (63%), Gaps = 8/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L++GI +  K Q+L GVTGSGKTFT+A VI    RP +V++
Sbjct: 4   FKLHSSYAPAGDQPKAINELVEGIKNNVKEQVLQGVTGSGKTFTIANVINQFNRPVLVLS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY+E K FFP N VEYFVSY+DYY+PEAY+P +D+YI+K S  N +ID MR 
Sbjct: 64  HNKTLAGQLYTELKGFFPENKVEYFVSYFDYYRPEAYIPSSDSYIDKTSKRNAEIDSMRM 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  S+L RND IVV+SVS IYG  +   Y    + +  G  + + + + SL+K+ Y R 
Sbjct: 124 SAVNSILSRNDTIVVASVSAIYGALNPYEYENNFMTIHKGQKISRNDFIRSLIKRNYFRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+    G+F V GD + I P +      RV  FG++IE I   +P+T +   + +   ++
Sbjct: 184 DVNSELGSFAVKGDLVLIQPVYDNSFMIRVDFFGDEIESIKTMHPITKEVFASYDEFLLF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               Y      L   ++  + EL+ R+   EK  RLLEAQR+++R+  DL+ L   G+C 
Sbjct: 244 PGDAYTVNNDILKQTVELARIELEERIAYFEKNNRLLEAQRIKERVERDLDSLAEFGTCP 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPE-DSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
            IENYS YL  R  G+ P TL +Y  + + ++F+DESH+ IPQ+  M++GD  RK  L +
Sbjct: 304 GIENYSMYLDNRTFGQRPYTLLDYFHDKNPIVFIDESHMMIPQLRAMFKGDRSRKQALVD 363

Query: 500 YGFRLPSCMDNRPLRFEEW-NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           YGFRLPS +DNRPL FEE+ N      I +SATP  +EL++  G++    +RPTGL++P 
Sbjct: 364 YGFRLPSALDNRPLTFEEFENSFDFQKIYISATPDEYELDKTHGVVTTLFVRPTGLLNPS 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R A+ Q+E++YDE+    ++G R L+   TK +AE+LT Y  E+N ++ Y+HSE KT
Sbjct: 424 IEVRPAKGQIENIYDELQKQKEKGERTLILTTTKSLAEELTRYFMEKNEKIAYIHSEHKT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER EI+R LR G +D +VGINLLREG+D+PE  L+ +LDAD E F RS  SLIQ  GRA
Sbjct: 484 FERNEILRKLRKGIYDCVVGINLLREGIDLPEVSLIMVLDADNESFFRSTRSLIQITGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN N +VI YAD+++KS+Q  I + +  R+ Q E+N KHNI P+++ + I E I    +
Sbjct: 544 ARNSNGRVIFYADSVSKSMQETILQNSEIRQIQEEYNLKHNIVPKTIIKPIPEPIHNQKM 603

Query: 739 EDAAT---TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            DA +    N S   Q   LSK +    ++ LRKQM  AA  L++E A  IRD I  L+
Sbjct: 604 ADAISFYFKNSSSKNQDGKLSKDE---LIEKLRKQMEQAAKELDYERAMEIRDIIIELR 659


>gi|157962112|ref|YP_001502146.1| excinuclease ABC subunit B [Shewanella pealeana ATCC 700345]
 gi|157847112|gb|ABV87611.1| excinuclease ABC, B subunit [Shewanella pealeana ATCC 700345]
          Length = 661

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 287/589 (48%), Positives = 399/589 (67%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y PSGDQP AIA+L+ GI S    Q L GVTGSGKTFT+A +I  ++RP I++A
Sbjct: 6   FILHSNYTPSGDQPEAIARLVDGIDSGSSHQTLKGVTGSGKTFTVANIIHRLKRPTIILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE ++FFP NAVE+FVSYYDYYQPE Y+P +D +I K+S+INE ++R+R 
Sbjct: 66  HNKTLAAQLYSEMRHFFPENAVEFFVSYYDYYQPEVYLPGSDRFIRKDSAINEHLERLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T++L+ER D IVV+SVS IYG+G  ++Y  + V+L +G  ++  +L+  L + QY R 
Sbjct: 126 STTKALIERRDVIVVASVSSIYGLGDPDAYRSLQVKLWLGQEIDLDDLIQRLERLQYTRC 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  I R TF V    I+IFP+  E  A  V +    + ++     ++GQ++  +    + 
Sbjct: 186 NRTINRATFLVREGVIDIFPADSEHQALTVEIEAGRVNQLYWIDAISGQQLETIAEYCVS 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y      +  A   I  +++ ++  L  + RL EA RL +R   DLE+L   G C 
Sbjct: 246 PKTLYSVSIEQVELACGQIMSDMEQQVAILNADNRLTEAARLYERTVSDLELLRLQGYCP 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+ YL  R+P  PP TLF+Y+P+D LLF+DESHV IPQIS MY+ D  RK TL ++
Sbjct: 306 GIENYASYLNQRDPQLPPTTLFDYLPKDGLLFIDESHVMIPQISAMYKSDQSRKNTLIDF 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPL F E+  ++P TI VSATP ++EL + +  + +QIIRPTGL+DP +E
Sbjct: 366 GFRLPSARNNRPLSFTEFESIKPQTIFVSATPSNYELSKSKQQVFKQIIRPTGLLDPEIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR +   +ED+  EI L   +  R L+T LTK+ AE L ++L  + I+V Y+HS++KT +
Sbjct: 426 IRPSDNNLEDLVQEIALRLARNERTLVTTLTKKSAESLNDFLSAKGIKVSYLHSDIKTND 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII+ LR+G+ DVL+GINLLREGLDIPE  LVA+LDAD  GFLRS+ +LIQ IGRAAR
Sbjct: 486 RVEIIKALRVGEIDVLIGINLLREGLDIPEASLVAVLDADTAGFLRSEQALIQIIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           N N K ILYAD +T ++Q AIDE+  RR  Q+ +N  + I P S K ++
Sbjct: 546 NENGKAILYADKVTTAMQSAIDESAERRGHQIIYNMANGIVPSSSKRRL 594


>gi|193216493|ref|YP_001999735.1| excinuclease ABC subunit B [Mycoplasma arthritidis 158L3-1]
 gi|8134791|sp|Q9ZB21|UVB2_MYCPU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238692470|sp|B3PLX9|UVRB_MYCA5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|4097425|gb|AAD00088.1| UvrB exinuclease subunit B [Mycoplasma pulmonis]
 gi|193001816|gb|ACF07031.1| excinuclease ABC subunit B [Mycoplasma arthritidis 158L3-1]
          Length = 660

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 298/649 (45%), Positives = 424/649 (65%), Gaps = 5/649 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP AI  L+ GI  +++ Q+LLGVTGSGKTFT+A VI  + RP+++++
Sbjct: 5   FVLHSPFAPSGDQPEAIKALVDGIDEKKEHQVLLGVTGSGKTFTIANVIAQLNRPSLIIS 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA+QLYSE K  FP N VEYFVSY+D+Y+PEAY+P++D YIEK S  N++++ MR 
Sbjct: 65  HNKTLASQLYSELKALFPDNRVEYFVSYFDFYKPEAYIPKSDLYIEKTSKNNKELEAMRM 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +L  R D IVV+SV+ IYG  + + Y Q    +++G  +++K LL  L +  Y+R 
Sbjct: 125 SAINALSIRKDTIVVASVAAIYGESNPKHYRQNFFPIEVGMQIDRKSLLLKLSQIGYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            + + +G F V GDSIEI P ++ D   R+ MFGN+IE I+   PL+     + + + ++
Sbjct: 185 RMELNKGQFDVKGDSIEICPGYVSDTNIRIDMFGNEIEAITLIDPLSKNVEGSRKNMTLF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y     T+   +  IK+EL  R+   +   +LLEAQR++ R   DL+ L   G   
Sbjct: 245 PATTYTVHENTIQNTVDLIKQELSERIEYFKSHDKLLEAQRIKDRTLNDLDSLLEFGYTS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL GR PG+ P TLF+Y+P+DS++F+DESH+ IPQ+ GM+ GD  RK +L EY
Sbjct: 305 GIENYSRYLDGRAPGQRPYTLFDYLPDDSVIFIDESHLMIPQLHGMHNGDRARKLSLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+   +   I +SATPG +EL+   G IV Q IRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFEEFAEFKFPKIYISATPGDYELDLTHGEIVTQYIRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I S   Q+ED+YD +     +  R L+   TK+ AE+L+ +L E+ I+  Y+H   K  E
Sbjct: 425 IHSRDNQIEDIYDHLKEQIAKKERTLILTTTKKNAEELSLFLQEKKIKSAYIHDRFKIFE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI++ LR+GKFDV+VGINLL+EG+D+PE  L+ +L+AD  G +R   SLIQ +GRAAR
Sbjct: 485 RNEILKGLRMGKFDVVVGINLLKEGIDLPEVSLICVLNADSTGLMRDTRSLIQIVGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-DPILLE 739
           N + KVI YA+ IT S++  I++   +R+ Q E+N+KHNI P+++ + I   I + IL E
Sbjct: 545 NDHGKVIFYANEITSSMRECIEDNLFKRKIQSEYNEKHNIIPKTIVKPIAPPIQNGILSE 604

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           D +      D  Q+  +KK      + +RK   LA  N  FEEA  IRD
Sbjct: 605 DHSKYYGEKDLSQMKHNKKFID---QMVRKMTQLAKAN-KFEEAIEIRD 649


>gi|312601591|gb|ADQ90846.1| excinuclease ABC subunit B [Mycoplasma hyopneumoniae 168]
          Length = 679

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 293/660 (44%), Positives = 430/660 (65%), Gaps = 7/660 (1%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K+   F++  +Y PSGDQP AI  L+ GI S +K Q+LLGVTGSGKTFTMA VI    +P
Sbjct: 23  KEFKKFKLVANYKPSGDQPKAIKNLINGIKSGKKSQVLLGVTGSGKTFTMANVIAYFNKP 82

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            I+++ NK LA+QLYSEFK FFP N VE+++SY+D+Y+PEAY+P  D Y+EK S  N  +
Sbjct: 83  VIILSHNKTLASQLYSEFKEFFPENRVEFYISYFDFYRPEAYLPTKDVYLEKTSKTNFDL 142

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           + MR SA  +L+ RND IV++SV+ IYG  + + Y    + L++   ++  EL   L + 
Sbjct: 143 ETMRMSALNALMMRNDTIVIASVAAIYGTLNPDEYQDNFLVLEVDQEIKPNELALKLARI 202

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           +Y+   I    G F + GD +EIFP+  +    RV  FGN IE I+  +P++   I++  
Sbjct: 203 KYENNQIEQKPGIFSLKGDVLEIFPAWSDAFNIRVEFFGNIIEAINIIHPVSKSIIKSYN 262

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
           +  +Y  + Y   +  +N A+K IK EL  +L   EK  +L+E QRL+ R+  D++ L  
Sbjct: 263 SFTVYPATAYSVKKNIINRAIKTIKIELAEQLEFFEKNNKLVEKQRLKDRVNNDIDSLSE 322

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENY+R++ GR  GE P +L +Y+P+D L+F+DESH+ I QI GMY GD  RK 
Sbjct: 323 FGICSGIENYARHIDGRQKGEKPFSLLDYLPQDGLIFIDESHIMISQIKGMYEGDRSRKQ 382

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL +YG+RLPS +DNRPL+  E+   +   I VSATP S+E+++  G IV QIIRPTGL+
Sbjct: 383 TLVDYGYRLPSALDNRPLKLSEFEEYQQAKIYVSATPASYEIDKANGEIVSQIIRPTGLI 442

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHS 614
           DP + I S + Q+E ++  +    ++  R L+   TKR+AE++++YL E  ++ V Y+HS
Sbjct: 443 DPEIVIESTKNQMEKIFQYLLKQKEKKERSLILTTTKRLAEEISKYLQEEKLQNVYYLHS 502

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+ T ER EII  LR G +D +VGINLLREG+DIPE  L+ +L+A    FLRS++SLIQ 
Sbjct: 503 EMTTFERDEIIIKLRKGIYDAIVGINLLREGVDIPEVSLIFVLEAGLVSFLRSESSLIQI 562

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN + KVIL+ DT+T++I+  +     +R+ Q+E+N+K+ I P+++K+ I + I+
Sbjct: 563 IGRAARNDHGKVILFTDTVTETIEKVLKNNENKRKIQIEYNQKNKIIPKTIKKPIPDSIN 622

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           P       +  IS   ++    KK+ + ++K L K+M +AAD   FEEA +IRD I  +K
Sbjct: 623 P------NSLKISKVLREKQKDKKEMENYIKILEKEMKIAADANRFEEAIQIRDLIAEIK 676


>gi|72080975|ref|YP_288033.1| excinuclease ABC subunit B [Mycoplasma hyopneumoniae 7448]
          Length = 659

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 292/660 (44%), Positives = 430/660 (65%), Gaps = 7/660 (1%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K+   F++  +Y PSGDQP AI  L+ GI S +K Q+LLGVTGSGKTFTMA VI    +P
Sbjct: 3   KEFKKFKLVANYKPSGDQPKAIKNLINGIKSGKKSQVLLGVTGSGKTFTMANVIAYFNKP 62

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            I+++ NK LA+QLYSEFK FFP N VE+++SY+D+Y+PEAY+P  D Y+EK S  N  +
Sbjct: 63  VIILSHNKTLASQLYSEFKEFFPENRVEFYISYFDFYRPEAYLPTKDVYLEKTSKTNFDL 122

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           + MR SA  +L+ RND IV++SV+ IYG  + + Y    + L++   ++  EL   L + 
Sbjct: 123 ETMRMSALNALMMRNDTIVIASVAAIYGTLNPDEYQDNFLVLEVDQEIKPNELALKLARI 182

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           +Y+   I    G F + GD +EIFP+  +    RV  FGN IE I+  +P++   I++  
Sbjct: 183 KYENNQIEQKPGIFSLKGDVLEIFPAWSDAFNIRVEFFGNIIEAINIIHPVSKSIIKSYN 242

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
           +  +Y  + Y   +  +N A++ IK EL  +L   EK  +L+E QRL+ R+  D++ L  
Sbjct: 243 SFTVYPATAYSVKKNIINRAIETIKIELAEQLEFFEKNNKLVEKQRLKDRVNNDIDSLSE 302

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  +ENY+R++ GR  GE P +L +Y+P+D L+F+DESH+ I QI GMY GD  RK 
Sbjct: 303 FGICSGVENYARHIDGRQKGEKPFSLLDYLPQDGLIFIDESHIMISQIKGMYEGDRSRKQ 362

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL +YG+RLPS +DNRPL+  E+   R   I VSATP S+E+++  G IV QIIRPTGL+
Sbjct: 363 TLVDYGYRLPSALDNRPLKLSEFEEYRQAKIYVSATPASYEIDKTNGEIVSQIIRPTGLI 422

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHS 614
           DP + I S + Q+E ++  +    ++  R L+   TKR+AE++++YL E  ++ V Y+HS
Sbjct: 423 DPEIVIESTKNQMEKIFQYLLKQKEKKERSLILTTTKRLAEEISKYLQEEKLQNVYYLHS 482

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+ T ER EII  LR G +D +VGINLLREG+DIPE  L+ +L+A    FLRS++SLIQ 
Sbjct: 483 EMTTFERDEIIIKLRKGIYDAIVGINLLREGVDIPEVSLIFVLEAGLVSFLRSESSLIQI 542

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN + KVIL+ DT+T++I+  + +   +R+ Q+E+N+K+ I P+++K+ I   I+
Sbjct: 543 IGRAARNDHGKVILFTDTVTETIEKVLKDNENKRKIQIEYNQKNKIIPKTIKKPIPNSIN 602

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           P       +  IS   ++    KK+ + ++K L K+M +AAD   FEEA +IRD I  +K
Sbjct: 603 P------NSLKISKVLREKQKDKKEMEDYIKILEKEMKIAADANRFEEAIQIRDLIAEIK 656


>gi|144575569|gb|AAZ54010.2| excinuclease ABC subunit B [Mycoplasma hyopneumoniae 7448]
          Length = 661

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 292/660 (44%), Positives = 430/660 (65%), Gaps = 7/660 (1%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K+   F++  +Y PSGDQP AI  L+ GI S +K Q+LLGVTGSGKTFTMA VI    +P
Sbjct: 5   KEFKKFKLVANYKPSGDQPKAIKNLINGIKSGKKSQVLLGVTGSGKTFTMANVIAYFNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            I+++ NK LA+QLYSEFK FFP N VE+++SY+D+Y+PEAY+P  D Y+EK S  N  +
Sbjct: 65  VIILSHNKTLASQLYSEFKEFFPENRVEFYISYFDFYRPEAYLPTKDVYLEKTSKTNFDL 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           + MR SA  +L+ RND IV++SV+ IYG  + + Y    + L++   ++  EL   L + 
Sbjct: 125 ETMRMSALNALMMRNDTIVIASVAAIYGTLNPDEYQDNFLVLEVDQEIKPNELALKLARI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           +Y+   I    G F + GD +EIFP+  +    RV  FGN IE I+  +P++   I++  
Sbjct: 185 KYENNQIEQKPGIFSLKGDVLEIFPAWSDAFNIRVEFFGNIIEAINIIHPVSKSIIKSYN 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
           +  +Y  + Y   +  +N A++ IK EL  +L   EK  +L+E QRL+ R+  D++ L  
Sbjct: 245 SFTVYPATAYSVKKNIINRAIETIKIELAEQLEFFEKNNKLVEKQRLKDRVNNDIDSLSE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  +ENY+R++ GR  GE P +L +Y+P+D L+F+DESH+ I QI GMY GD  RK 
Sbjct: 305 FGICSGVENYARHIDGRQKGEKPFSLLDYLPQDGLIFIDESHIMISQIKGMYEGDRSRKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL +YG+RLPS +DNRPL+  E+   R   I VSATP S+E+++  G IV QIIRPTGL+
Sbjct: 365 TLVDYGYRLPSALDNRPLKLSEFEEYRQAKIYVSATPASYEIDKTNGEIVSQIIRPTGLI 424

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHS 614
           DP + I S + Q+E ++  +    ++  R L+   TKR+AE++++YL E  ++ V Y+HS
Sbjct: 425 DPEIVIESTKNQMEKIFQYLLKQKEKKERSLILTTTKRLAEEISKYLQEEKLQNVYYLHS 484

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+ T ER EII  LR G +D +VGINLLREG+DIPE  L+ +L+A    FLRS++SLIQ 
Sbjct: 485 EMTTFERDEIIIKLRKGIYDAIVGINLLREGVDIPEVSLIFVLEAGLVSFLRSESSLIQI 544

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN + KVIL+ DT+T++I+  + +   +R+ Q+E+N+K+ I P+++K+ I   I+
Sbjct: 545 IGRAARNDHGKVILFTDTVTETIEKVLKDNENKRKIQIEYNQKNKIIPKTIKKPIPNSIN 604

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           P       +  IS   ++    KK+ + ++K L K+M +AAD   FEEA +IRD I  +K
Sbjct: 605 P------NSLKISKVLREKQKDKKEMEDYIKILEKEMKIAADANRFEEAIQIRDLIAEIK 658


>gi|167623929|ref|YP_001674223.1| excinuclease ABC subunit B [Shewanella halifaxensis HAW-EB4]
 gi|167353951|gb|ABZ76564.1| excinuclease ABC, B subunit [Shewanella halifaxensis HAW-EB4]
          Length = 664

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 289/589 (49%), Positives = 405/589 (68%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP AIA+L+ GI S    Q L GVTGSGKTFT+A +I  ++RP I++A
Sbjct: 11  FILHSSYLPSGDQPEAIARLIDGIESGASHQTLKGVTGSGKTFTVANIIHRLKRPTIILA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE ++FFP NAVE+FVSYYDYYQPE Y+P +D +I K+S+IN  ++R+R 
Sbjct: 71  HNKTLAAQLYSEMRHFFPENAVEFFVSYYDYYQPEVYLPGSDRFIRKDSAINAHLERLRL 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T++L+ER D IVV+SVS +YG+G  ++Y  + V+L +G ++E +EL+  L + QY R 
Sbjct: 131 STTKALIERRDVIVVASVSSVYGLGDPDAYRSLQVKLSLGQAIETEELIERLERLQYGRC 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  I R TF V   +++IFP+  E  A  + +    + ++     ++G+K+ +V+   + 
Sbjct: 191 NRTIKRATFLVRDGAVDIFPADSEHKALTLELDDGHLNKLYWIDAVSGEKLADVDEYYVS 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y      ++ A + I +++++++  L  E RL EA RL +R   DLE+L   G C 
Sbjct: 251 PKTLYSVSVEQVDLACEQIMKDMELQVASLSAENRLTEAARLYERTVSDLELLRLQGYCP 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+ YL  R+P  PP TLF+Y+P+D LLF+DESHV +PQIS MY+ D  RK TL ++
Sbjct: 311 GIENYASYLNQRDPKLPPTTLFDYLPKDGLLFIDESHVMVPQISAMYKSDQSRKNTLIDF 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPL F+E+  ++P TI VSATPG +EL +    I +QIIRPTGL+DP +E
Sbjct: 371 GFRLPSARNNRPLSFDEFESIKPQTIFVSATPGRYELSKSNSHIFKQIIRPTGLLDPEIE 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR +   ++D+  EI L   +  R L+T LTK+ AE L +++  R I+V Y+HS+VKT +
Sbjct: 431 IRPSENNLKDLVKEIELRVARNERTLVTTLTKKSAEALNDFIAARGIKVSYLHSDVKTND 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII  LR G+ DVL+GINLLREGLDIPE  LVA+LDAD  GFLRS+ +LIQ IGRAAR
Sbjct: 491 RVEIINALRAGELDVLIGINLLREGLDIPEASLVAVLDADHAGFLRSEQALIQIIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           N N K ILYAD +T ++Q AIDE++ RR  Q+ +N  + I P S K K+
Sbjct: 551 NENGKAILYADKMTFAMQKAIDESSERRGHQMLYNMANGIVPSSSKRKL 599


>gi|71893996|ref|YP_279442.1| excinuclease ABC subunit B [Mycoplasma hyopneumoniae J]
          Length = 659

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 292/660 (44%), Positives = 431/660 (65%), Gaps = 7/660 (1%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K+   F++  +Y PSGDQP AI  L+ GI S +K Q+LLGVTGSGKTFTMA VI    +P
Sbjct: 3   KEFKKFKLVANYKPSGDQPKAIKNLINGIKSGKKSQVLLGVTGSGKTFTMANVIAYFNKP 62

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            I+++ NK LA+QLYSEFK FFP N VE+++SY+D+Y+PEAY+P  D Y+EK S  N  +
Sbjct: 63  VIILSHNKTLASQLYSEFKEFFPENRVEFYISYFDFYRPEAYLPTKDVYLEKTSKTNFDL 122

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           + MR SA  +L+ RND IV++SV+ IYG  + + Y    + L++   ++  EL   L + 
Sbjct: 123 ETMRMSALNALMMRNDTIVIASVAAIYGTLNPDEYQDNFLVLEVDQEIKPNELALKLARI 182

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           +Y+   I    G F + GD +EIFP+  +    RV  FGN IE I+  +P++   I++  
Sbjct: 183 KYENNQIEQKPGIFSLKGDVLEIFPAWSDAFNIRVEFFGNIIEAINIIHPVSKSIIKSYN 242

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
           +  +Y  + Y   +  +N A++ IK EL  +L   EK  +L+E QRL+ R+  D++ L  
Sbjct: 243 SFTVYPATAYSVKKNIINRAIETIKIELGEQLEFFEKNNKLVEKQRLKDRVNNDIDSLSE 302

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENY+R++ GR  GE P +L +Y+P+D L+F+DESH+ I QI GMY GD  RK 
Sbjct: 303 FGICSGIENYARHIDGRQKGEKPFSLLDYLPQDGLIFIDESHIMISQIKGMYEGDRSRKQ 362

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL +YG+RLPS +DNRPL+  E+   +   I VSATP S+E+++  G IV QIIRPTGL+
Sbjct: 363 TLVDYGYRLPSALDNRPLKLSEFEKYQQAKIYVSATPASYEIDKTNGEIVSQIIRPTGLI 422

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHS 614
           DP + I S + Q+E ++  +    ++  R L+   TKR+AE++++YL E  ++ V Y+HS
Sbjct: 423 DPEIVIESTKNQMEKIFQYLLKQKEKKERSLILTTTKRLAEEISKYLQEEKLQNVYYLHS 482

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+ T ER EII  LR G +D +VGINLLREG+DIPE  L+ +L+A    FLRS++SLIQ 
Sbjct: 483 EMTTFERDEIIIKLRKGIYDAIVGINLLREGVDIPEVSLIFVLEAGLVSFLRSESSLIQI 542

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN + KVIL+ DT+T++I+  + +   +R+ Q+E+N+K+ I P+++K+ I + I+
Sbjct: 543 IGRAARNDHGKVILFTDTVTETIEKVLKDNENKRKIQIEYNQKNKIIPKTIKKPIPDSIN 602

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           P       +  IS   ++    KK+ + ++K L K+M +AAD   FEEA +IRD I  +K
Sbjct: 603 P------NSLKISKVLREKQKDKKEMENYIKILEKEMKIAADANRFEEAIQIRDLIAEIK 656


>gi|144227741|gb|AAZ44731.2| excinuclease ABC subunit B [Mycoplasma hyopneumoniae J]
          Length = 661

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 292/660 (44%), Positives = 431/660 (65%), Gaps = 7/660 (1%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K+   F++  +Y PSGDQP AI  L+ GI S +K Q+LLGVTGSGKTFTMA VI    +P
Sbjct: 5   KEFKKFKLVANYKPSGDQPKAIKNLINGIKSGKKSQVLLGVTGSGKTFTMANVIAYFNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            I+++ NK LA+QLYSEFK FFP N VE+++SY+D+Y+PEAY+P  D Y+EK S  N  +
Sbjct: 65  VIILSHNKTLASQLYSEFKEFFPENRVEFYISYFDFYRPEAYLPTKDVYLEKTSKTNFDL 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           + MR SA  +L+ RND IV++SV+ IYG  + + Y    + L++   ++  EL   L + 
Sbjct: 125 ETMRMSALNALMMRNDTIVIASVAAIYGTLNPDEYQDNFLVLEVDQEIKPNELALKLARI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           +Y+   I    G F + GD +EIFP+  +    RV  FGN IE I+  +P++   I++  
Sbjct: 185 KYENNQIEQKPGIFSLKGDVLEIFPAWSDAFNIRVEFFGNIIEAINIIHPVSKSIIKSYN 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
           +  +Y  + Y   +  +N A++ IK EL  +L   EK  +L+E QRL+ R+  D++ L  
Sbjct: 245 SFTVYPATAYSVKKNIINRAIETIKIELGEQLEFFEKNNKLVEKQRLKDRVNNDIDSLSE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENY+R++ GR  GE P +L +Y+P+D L+F+DESH+ I QI GMY GD  RK 
Sbjct: 305 FGICSGIENYARHIDGRQKGEKPFSLLDYLPQDGLIFIDESHIMISQIKGMYEGDRSRKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL +YG+RLPS +DNRPL+  E+   +   I VSATP S+E+++  G IV QIIRPTGL+
Sbjct: 365 TLVDYGYRLPSALDNRPLKLSEFEKYQQAKIYVSATPASYEIDKTNGEIVSQIIRPTGLI 424

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHS 614
           DP + I S + Q+E ++  +    ++  R L+   TKR+AE++++YL E  ++ V Y+HS
Sbjct: 425 DPEIVIESTKNQMEKIFQYLLKQKEKKERSLILTTTKRLAEEISKYLQEEKLQNVYYLHS 484

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+ T ER EII  LR G +D +VGINLLREG+DIPE  L+ +L+A    FLRS++SLIQ 
Sbjct: 485 EMTTFERDEIIIKLRKGIYDAIVGINLLREGVDIPEVSLIFVLEAGLVSFLRSESSLIQI 544

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN + KVIL+ DT+T++I+  + +   +R+ Q+E+N+K+ I P+++K+ I + I+
Sbjct: 545 IGRAARNDHGKVILFTDTVTETIEKVLKDNENKRKIQIEYNQKNKIIPKTIKKPIPDSIN 604

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           P       +  IS   ++    KK+ + ++K L K+M +AAD   FEEA +IRD I  +K
Sbjct: 605 P------NSLKISKVLREKQKDKKEMENYIKILEKEMKIAADANRFEEAIQIRDLIAEIK 658


>gi|54020288|ref|YP_116177.1| excinuclease ABC subunit B [Mycoplasma hyopneumoniae 232]
 gi|53987461|gb|AAV27662.1| excinuclease ABC subunit B [Mycoplasma hyopneumoniae 232]
          Length = 679

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 292/660 (44%), Positives = 432/660 (65%), Gaps = 7/660 (1%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K+   F++  +Y PSGDQP AI  L+ GI S +K Q+LLGVTGSGKTFTMA VI    +P
Sbjct: 23  KEFKKFKLVANYKPSGDQPKAIKNLINGIKSGKKSQVLLGVTGSGKTFTMANVIAYFNKP 82

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            I+++ NK LA+QLYSEFK FFP N VE+++SY+D+Y+PEAY+P  D Y+EK S  N  +
Sbjct: 83  VIILSHNKTLASQLYSEFKEFFPENRVEFYISYFDFYRPEAYLPTKDVYLEKTSKTNFDL 142

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           + MR SA  +L+ RND IV++SV+ IYG  + + Y    + L++   ++  EL   L + 
Sbjct: 143 ETMRMSALNALMMRNDTIVIASVAAIYGTLNPDEYQDNFLVLEVDQEIKPNELALKLARI 202

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           +Y+   I    G F + GD +EIFP+  +    RV  FGN IE I+  +P++   I++  
Sbjct: 203 KYENNQIEQKPGIFSLKGDVLEIFPAWSDAFNIRVEFFGNIIETINIIHPVSKSIIKSYN 262

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
           +  +Y  + Y   +  +N A++ IK EL  +L   EK  +L+E QRL+ R+  D++ L  
Sbjct: 263 SFTVYPATAYSVKKNIINRAIETIKIELAEQLQFFEKNNKLVEKQRLKDRVNNDVDSLSE 322

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENY+R++ GR  GE P +L +Y+P+D L+F+DESH+ I QI GMY GD  RK 
Sbjct: 323 FGICSGIENYARHIDGRQKGEKPFSLLDYLPQDGLIFIDESHIMISQIKGMYEGDRSRKQ 382

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL +YG+RLPS +DNRPL+  E+   +   I VSATP S+E+++  G IV QIIRPTGL+
Sbjct: 383 TLVDYGYRLPSALDNRPLKLSEFEEYQHAKIYVSATPASYEIDKANGEIVSQIIRPTGLI 442

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHS 614
           DP + I S + Q+E ++  +    ++  R L+   TKR+AE++++YL E  ++ V Y+HS
Sbjct: 443 DPEIVIESTKNQMEKIFQYLLKQKKKKERSLILTTTKRLAEEISKYLQEEKLQNVYYLHS 502

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+ T ER EII  LR G +D +VGINLLREG+DIPE  L+ +L+A    FLRS++SLIQ 
Sbjct: 503 EMTTFERDEIIIKLRKGIYDAIVGINLLREGVDIPEVSLIFVLEAGLVSFLRSESSLIQI 562

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN + KVIL+ DT+T++I+  + +   +R+ Q+E+N+K+ I P+++K+ I + I+
Sbjct: 563 IGRAARNDHGKVILFTDTVTETIEKVLKDNENKRKIQIEYNQKNKIIPKTIKKPIPDSIN 622

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           P       +  IS   ++   +KK+ + ++K L K+M +AAD   FEEA +IRD I  +K
Sbjct: 623 P------NSLKISKVLREKQKNKKEVENYIKILEKEMKIAADANRFEEAIQIRDLIAEIK 676


>gi|294637393|ref|ZP_06715685.1| excinuclease ABC subunit B [Edwardsiella tarda ATCC 23685]
 gi|291089428|gb|EFE21989.1| excinuclease ABC subunit B [Edwardsiella tarda ATCC 23685]
          Length = 484

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 279/480 (58%), Positives = 352/480 (73%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L  G+      Q LLGVTGSGKTFT+A VI  + RP +VMA
Sbjct: 5   FKLHSAFQPSGDQPEAIRRLEAGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKQFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLSELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ED A RV +F  ++E +S F PLTGQ +R V+   +Y
Sbjct: 185 DQAFARGTFRVRGEVIDIFPAEAEDQALRVELFDEEVERLSLFDPLTGQLLRTVQRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ I+ EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIRGELAQRRQVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGNYELERSGGEVIDQVVRPTGLLDPQIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EIN  A  G R+L+T LTKRMAEDLTEYL E  +RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEINQRAAIGERVLVTTLTKRMAEDLTEYLEEHGVRVRYLHSDIDTVE 484


>gi|260221137|emb|CBA29402.1| UvrABC system protein B [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 537

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 285/527 (54%), Positives = 375/527 (71%), Gaps = 7/527 (1%)

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           +S IYGIG  ESY QM++ L++GD + Q+++++ LV+ QY+R D+   RG FRV GD+I+
Sbjct: 1   MSAIYGIGKPESYHQMVMTLRVGDKLGQRDMIAQLVRMQYQRNDMDFSRGAFRVRGDTID 60

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP+   ++A RV +F ++IE +  F PLTG+  + +    +Y +SHYVTPR  +  A++
Sbjct: 61  IFPAEHSEMAIRVELFDDEIESLQLFDPLTGRIRQKIPRFTVYPSSHYVTPRDQVLAAVE 120

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            IK EL  RL EL   G+L+EAQRLEQR  +DLEML   G C+ IENYSR+L+G  PGEP
Sbjct: 121 TIKTELSDRLKELVSAGKLVEAQRLEQRTRFDLEMLSEVGHCKGIENYSRHLSGSAPGEP 180

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           P TL +Y+P+D+L+F+DESHV I Q  GMY GD  RK TL EYGFRLPS +DNRPL+FEE
Sbjct: 181 PSTLTDYLPKDALMFLDESHVLIGQFGGMYNGDRARKTTLVEYGFRLPSALDNRPLKFEE 240

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           +       + VSATP  WE E   G +VEQ++RPTGLVDP VE+R A TQV+DV  EI +
Sbjct: 241 FETKMRQVVFVSATPAQWENEHA-GQVVEQVVRPTGLVDPEVEVRPAGTQVDDVLQEIRI 299

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              +  R+L+T LTKRMAE LT+YL +  ++VRY+HS+V T+ER+EI+RDLRLG FDVLV
Sbjct: 300 RVDKNERVLITTLTKRMAEQLTDYLTDNGVKVRYLHSDVDTVERVEILRDLRLGTFDVLV 359

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAARN+  K ILYAD IT S+
Sbjct: 360 GINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLEGKAILYADKITDSM 419

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA--TTNISIDAQQLS- 754
           + AI ET RRR+KQ+ HN +  I P+++ +K+ ++ID +  E A      +  DAQQ + 
Sbjct: 420 ERAIGETERRRKKQIAHNLERGITPKAIVKKVRDLIDGVYSEKAGKEAERLERDAQQRAQ 479

Query: 755 ---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
              +S+K     +K L K M   A NL FE+AAR+RD++  LK   +
Sbjct: 480 VEDMSEKDISREIKRLEKLMMEHARNLEFEKAARVRDQLTILKEQAF 526


>gi|134095237|ref|YP_001100312.1| excinuclease ABC subunit B [Herminiimonas arsenicoxydans]
          Length = 609

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 276/545 (50%), Positives = 380/545 (69%)

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           MA VI  ++RP +++APNK L AQLY E K+FFP NAVEYFVSYYDY+QPE Y+P TD +
Sbjct: 1   MANVIHRLKRPTLILAPNKTLTAQLYGEMKHFFPENAVEYFVSYYDYFQPEIYMPGTDRF 60

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304
           I K+S+IN+ ++R+R S T+SL+ER D IVV+SVS IYG+G  E+Y  + + L  G  + 
Sbjct: 61  IPKDSAINDHLERLRLSTTKSLIERRDVIVVASVSSIYGLGDPEAYRALQIALSPGVKLN 120

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           Q+EL+  L   QY R +  + R TFR  GD I+IFP+  E  A RV +  + +  +    
Sbjct: 121 QRELIRRLALLQYDRTERTLKRATFRAQGDVIDIFPADSEHRAVRVELLDDSVASVQWLD 180

Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
           P+TG+ +  ++   +   + +  P   +++A K I  +++ R+ EL +  RL+EA RL +
Sbjct: 181 PVTGKTLGAIDHYLVSPKTLFAPPTNKIDSASKKILADMEERVAELNRNNRLVEANRLYE 240

Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484
           RIT+D+EM+   G C  +ENYS Y + R+P  PP TL +Y+P+D LLFVDESHV +PQIS
Sbjct: 241 RITHDVEMMREVGYCSGMENYSCYFSERDPASPPITLLDYLPKDGLLFVDESHVMVPQIS 300

Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544
            MYRGD  RK TL +YGFRLPS  +NRPL F E+  ++P TI VSATPG +EL   +  +
Sbjct: 301 AMYRGDQARKETLIDYGFRLPSSKNNRPLNFGEFEKVKPQTIFVSATPGDYELRVSKDRV 360

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           VEQ+IRPTGL+DP VE+R A   ++D+  EI+   ++  R+L+T LTK  AE+LT++L +
Sbjct: 361 VEQVIRPTGLLDPKVEVRKADGYIDDLLAEISKCVKKKNRVLVTTLTKVSAEELTDFLTD 420

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
             IR RYMHS++K  +R+EII  LR G+FDVL+GI+LLREGLDIPE  LVAILDAD+ GF
Sbjct: 421 NGIRARYMHSDIKAEDRVEIINGLRAGEFDVLIGISLLREGLDIPEASLVAILDADRAGF 480

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
           LRS  +LIQ IGR ARN N K ILYAD +T +++ AIDET RRR+ Q+  N+++ I+P S
Sbjct: 481 LRSAHALIQMIGRVARNENGKAILYADAVTPAMKQAIDETNRRRQLQIAFNEENGISPAS 540

Query: 725 VKEKI 729
              K+
Sbjct: 541 SVRKL 545


>gi|209554160|ref|YP_002284542.1| excinuclease ABC subunit B [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|209541661|gb|ACI59890.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
          Length = 666

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 311/664 (46%), Positives = 424/664 (63%), Gaps = 13/664 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D    ++ + Y P+GDQ  AI +++  I+     Q+LLG TG+GKTF++A VI   Q   
Sbjct: 3   DFKKLELVSSYKPAGDQQKAIDEMVNNINQGINRQVLLGATGTGKTFSVANVIAKTQLKT 62

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LAAQL++E K  FPHN VEYFVSY+DYYQPEAY P TDTYIEK+S  N +I+
Sbjct: 63  LVLAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIE 122

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            MR S   SL  RND IVV+SV+CIY   S   +++  + L +G+S++ +++   LV+  
Sbjct: 123 MMRLSTINSLATRNDVIVVASVACIYASVSPVEFTKKNLYLHVGESIDFEQIKYKLVQLG 182

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R+D  ++ GTFR+ GD IEI P + +    RVSMFGN++E I    P+T   I   + 
Sbjct: 183 YERKDHDLLPGTFRIRGDLIEIMPGYSDKFKIRVSMFGNEVEAIDLCDPITNNVISKEQR 242

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             + + S Y+     L+ A+  IK+EL  R+    K  +L+EAQR+EQR   D+E +   
Sbjct: 243 FILRSASEYIFDDSRLSIAIDNIKKELDERVKFFLKNNQLIEAQRIEQRTKQDIEGIVEF 302

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHR 493
           G C  +ENY R+L  R P + P T+F++     +D LL VDESH+++PQ+ GMY  D  R
Sbjct: 303 GFCSGVENYYRHLEHREPFQTPWTIFDFFGYNNQDWLLIVDESHISLPQVKGMYNTDRSR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL EYGFRLPS +DNRPL ++E+N      I VSATP   E+      IV QI+RPTG
Sbjct: 363 KQTLVEYGFRLPSALDNRPLNYDEFNEKISKVIYVSATPNDEEIALSNNHIVSQIVRPTG 422

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VEIR    Q++D+ +E+ L      R  +TV+T RMAEDLT YL    ++  Y+H
Sbjct: 423 LLDPIVEIRKTEHQIDDLINELMLLKNNNQRAFITVMTIRMAEDLTNYLNNTKVKAAYLH 482

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +E+KTLER  II  LR G +D +VGINLLREGLD+PE   V I DADK GF RS  SLIQ
Sbjct: 483 NELKTLERSSIINKLRKGIYDCIVGINLLREGLDVPEVARVFIFDADKPGFFRSDKSLIQ 542

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            IGRAARN + KVI+YADTIT+++Q+AIDET RRRE QL+ N KHNI P++       +I
Sbjct: 543 IIGRAARNADGKVIMYADTITQAMQVAIDETKRRREIQLDFNLKHNIVPKT-------II 595

Query: 734 DPILLEDAATTNISIDAQQLS--LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            PI  ED +  +   +A+  +   SK +    +K L+K+M  AA    +E AA+ RD I 
Sbjct: 596 KPI-HEDLSGHDYKQNAELYAAKASKNEYDQKIKELKKKMEEAAKKREYEIAAQYRDMIV 654

Query: 792 RLKS 795
            L++
Sbjct: 655 ELEA 658


>gi|171920764|ref|ZP_02931962.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|188524112|ref|ZP_03004189.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|195867738|ref|ZP_03079739.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198273465|ref|ZP_03206001.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|171903515|gb|EDT49804.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|195659906|gb|EDX53286.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|195660593|gb|EDX53849.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198249985|gb|EDY74765.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
          Length = 666

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 311/664 (46%), Positives = 424/664 (63%), Gaps = 13/664 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D    ++ + Y P+GDQ  AI +++  I+     Q+LLG TG+GKTF++A VI   Q   
Sbjct: 3   DFKKLELVSSYKPAGDQQKAIDEMVNNINQGINRQVLLGATGTGKTFSVANVIAKTQLKT 62

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LAAQL++E K  FPHN VEYFVSY+DYYQPEAY P TDTYIEK+S  N +I+
Sbjct: 63  LVLAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIE 122

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            MR S   SL  RND IVV+SV+CIY   S   +++  + L +G+S++ +++   LV+  
Sbjct: 123 MMRLSTINSLATRNDVIVVASVACIYASVSPVEFTKKNLYLHVGESIDFEQIKYKLVQLG 182

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R+D  ++ GTFR+ GD IEI P + +    RVSMFGN++E I    P+T   I   + 
Sbjct: 183 YERKDHDLLPGTFRIRGDLIEIMPGYSDKFKIRVSMFGNEVEAIDLCDPITNNVISKEQR 242

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             + + S Y+     L+ A+  IK+EL  R+    K  +L+EAQR+EQR   D+E +   
Sbjct: 243 FILRSASEYIFDDSRLSIAIDNIKKELDERVKFFLKNNQLIEAQRIEQRTKQDIEGIVEF 302

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHR 493
           G C  +ENY R+L  R P + P T+F++     +D LL VDESH+++PQ+ GMY  D  R
Sbjct: 303 GFCSGVENYYRHLEHREPFQTPWTIFDFFGYNNQDWLLIVDESHISLPQVKGMYNTDRSR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL EYGFRLPS +DNRPL ++E+N      I VSATP   E+      IV QI+RPTG
Sbjct: 363 KQTLVEYGFRLPSALDNRPLNYDEFNEKISKVIYVSATPNDEEIALSNNHIVSQIVRPTG 422

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VEIR    Q++D+ +E+ L      R  +TV+T RMAEDLT YL    ++  Y+H
Sbjct: 423 LLDPIVEIRKTEHQIDDLINELMLLKNNNQRAFITVMTIRMAEDLTNYLNNTKVKAAYLH 482

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +E+KTLER  II  LR G +D +VGINLLREGLD+PE   V I DADK GF RS  SLIQ
Sbjct: 483 NELKTLERSAIINKLRKGIYDCIVGINLLREGLDVPEVARVFIFDADKPGFFRSDKSLIQ 542

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            IGRAARN + KVI+YADTIT+++Q+AIDET RRRE QL+ N KHNI P++       +I
Sbjct: 543 IIGRAARNADGKVIMYADTITQAMQVAIDETKRRREIQLDFNLKHNIVPKT-------II 595

Query: 734 DPILLEDAATTNISIDAQQLS--LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            PI  ED +  +   +A+  +   SK +    +K L+K+M  AA    +E AA+ RD I 
Sbjct: 596 KPI-HEDLSGHDYKQNAELYAAKASKNEYDQKIKELKKKMEEAAKKREYEIAAQYRDMIV 654

Query: 792 RLKS 795
            L++
Sbjct: 655 ELEA 658


>gi|225550497|ref|ZP_03771446.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
 gi|225379651|gb|EEH02013.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
          Length = 666

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 311/664 (46%), Positives = 424/664 (63%), Gaps = 13/664 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D    ++ + Y P+GDQ  AI +++  I+     Q+LLG TG+GKTF++A VI   Q   
Sbjct: 3   DFKKLELVSSYKPAGDQQKAIDEMVNNINQGINRQVLLGATGTGKTFSVANVIAKTQLKT 62

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LAAQL++E K  FPHN VEYFVSY+DYYQPEAY P TDTYIEK+S  N +I+
Sbjct: 63  LVLAHNKTLAAQLFAELKEIFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIE 122

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            MR S   SL  RND IVV+SV+CIY   S   +++  + L +G+S++ +++   LV+  
Sbjct: 123 MMRLSTINSLATRNDVIVVASVACIYASVSPVEFTKKNLYLHVGESIDFEQIKYKLVQLG 182

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R+D  ++ GTFR+ GD IEI P + +    RVSMFGN++E I    P+T   I   + 
Sbjct: 183 YERKDHDLLPGTFRIRGDLIEIMPGYSDKFKIRVSMFGNEVEAIDLCDPITNNVISKEQR 242

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             + + S Y+     L+ A+  IK+EL  R+    K  +L+EAQR+EQR   D+E +   
Sbjct: 243 FILRSASEYIFDDSRLSIAIDNIKKELDERVKFFLKNNQLIEAQRIEQRTKQDIEGIVEF 302

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHR 493
           G C  +ENY R+L  R P + P T+F++     +D LL VDESH+++PQ+ GMY  D  R
Sbjct: 303 GFCSGVENYYRHLEHREPFQTPWTIFDFFGYNNQDWLLIVDESHISLPQVKGMYNTDRSR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL EYGFRLPS +DNRPL ++E+N      I VSATP   E+      IV QI+RPTG
Sbjct: 363 KQTLVEYGFRLPSALDNRPLNYDEFNEKISKVIYVSATPNDEEIALSNNHIVSQIVRPTG 422

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VEIR    Q++D+ +E+ L      R  +TV+T RMAEDLT YL    ++  Y+H
Sbjct: 423 LLDPIVEIRKTEHQIDDLINELMLLKNNNQRAFITVMTIRMAEDLTNYLNNTKVKAAYLH 482

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +E+KTLER  II  LR G +D +VGINLLREGLD+PE   V I DADK GF RS  SLIQ
Sbjct: 483 NELKTLERSAIINKLRKGIYDCIVGINLLREGLDVPEVARVFIFDADKPGFFRSDKSLIQ 542

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            IGRAARN + KVI+YADTIT+++Q+AIDET RRRE QL+ N KHNI P++       +I
Sbjct: 543 IIGRAARNADGKVIMYADTITQAMQVAIDETKRRREIQLDFNLKHNIVPKT-------II 595

Query: 734 DPILLEDAATTNISIDAQQLS--LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            PI  ED +  +   +A+  +   SK +    +K L+K+M  AA    +E AA+ RD I 
Sbjct: 596 KPI-HEDLSGHDYKQNAELYAAKASKNEYDQKIKELKKKMEEAAKKREYEIAAQYRDMIV 654

Query: 792 RLKS 795
            L++
Sbjct: 655 ELEA 658


>gi|185178702|ref|ZP_02964521.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188518557|ref|ZP_03004017.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|225551332|ref|ZP_03772278.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|184209295|gb|EDU06338.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188997878|gb|EDU66975.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|225379147|gb|EEH01512.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
          Length = 666

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 290/592 (48%), Positives = 390/592 (65%), Gaps = 3/592 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D    ++ + Y P+GDQ  AI +++  I+     Q+LLG TG+GKTF++A VI   Q   
Sbjct: 3   DFKKLELVSSYKPAGDQQKAIDEMVNNINQGINRQVLLGATGTGKTFSVANVIAKTQLKT 62

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LAAQL++E K  FPHN VEYFVSY+DYYQPEAY P TDTYIEK+S  N +I+
Sbjct: 63  LVLAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIE 122

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            MR S   SL  RND IVV+SV+CIY   S   +++  + L +G+S++ +++   LV+  
Sbjct: 123 MMRLSTINSLATRNDVIVVASVACIYASVSPVEFTKKNLYLHVGESIDFEQIKYKLVQLG 182

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R+D  ++ GTFR+ GD IEI P + +    RVSMFGN++E I    P+T   I   + 
Sbjct: 183 YERKDHDLLPGTFRIRGDLIEIMPGYSDKFKIRVSMFGNEVEAIDLCDPITNNVISKEQR 242

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             + + S Y+     L+ A+  IK+EL  R+    K  +L+EAQR+EQR   D+E +   
Sbjct: 243 FILRSASEYIFDDSRLSIAIDNIKKELNERVKFFLKNNQLIEAQRIEQRTKQDIEGIVEF 302

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHR 493
           G C  +ENY R+L  R P + P T+F++     +D LL VDESH+++PQ+ GMY  D  R
Sbjct: 303 GFCSGVENYYRHLEHREPFQTPWTIFDFFGYNNQDWLLIVDESHISLPQVKGMYNTDRSR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL EYGFRLPS +DNRPL ++E+N      I VSATP   E+      IV QI+RPTG
Sbjct: 363 KQTLVEYGFRLPSALDNRPLNYDEFNEKISKVIYVSATPNDEEIALSNNHIVSQIVRPTG 422

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VEIR    Q++D+ +E+ L      R  +TV+T RMAEDLT YL    ++  Y+H
Sbjct: 423 LLDPIVEIRKTEHQIDDLINELMLLKNNNQRAFITVMTIRMAEDLTNYLNNTKVKAAYLH 482

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +E+KTLER  II  LR G +D +VGINLLREGLD+PE   V I DADK GF RS  SLIQ
Sbjct: 483 NELKTLERSAIINKLRKGIYDCIVGINLLREGLDVPEVARVFIFDADKPGFFRSDKSLIQ 542

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
            IGRAARN + KVI+YADTIT+++Q+AIDET RRRE QL+ N KHNI P+++
Sbjct: 543 IIGRAARNADGKVIMYADTITQAMQVAIDETKRRREIQLDFNLKHNIVPKTI 594


>gi|289574301|ref|ZP_06454528.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis K85]
 gi|289538732|gb|EFD43310.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis K85]
          Length = 510

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 282/505 (55%), Positives = 369/505 (73%), Gaps = 1/505 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 7   FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 67  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREG 645
           R+E++R LRLG +DVLVGINLLRE 
Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREA 510


>gi|322378800|ref|ZP_08053229.1| excinuclease ABC subunit B [Helicobacter suis HS1]
 gi|322380649|ref|ZP_08054801.1| excinuclease ABC subunit B [Helicobacter suis HS5]
 gi|321146971|gb|EFX41719.1| excinuclease ABC subunit B [Helicobacter suis HS5]
 gi|321148830|gb|EFX43301.1| excinuclease ABC subunit B [Helicobacter suis HS1]
          Length = 627

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 299/630 (47%), Positives = 421/630 (66%), Gaps = 10/630 (1%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K Q L+GVTGSGKTF+MA +I  +Q P +VM+ NK L AQLYSEFK+FFP N VEYF+S+
Sbjct: 4   KYQTLVGVTGSGKTFSMAYLISKLQMPTLVMSHNKTLCAQLYSEFKSFFPKNHVEYFISH 63

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           +DYYQPE+Y+PR D +IEK+SSINE ++R+R SA  SLL  +D +VV+SVS  YG+G+  
Sbjct: 64  FDYYQPESYIPRRDLFIEKDSSINEDLERLRLSAITSLLGYDDVVVVASVSANYGLGNPA 123

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            Y  M+ ++++G  +   + L  LV+  Y+RQDI + RG FRV G+S++IFP++ +    
Sbjct: 124 EYLSMLEKIEVGQQISYTQFLLKLVEMGYERQDI-LERGYFRVVGESVDIFPAYNDSNFI 182

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           RV  FG++++ I+    L    I+++++  +YA S ++     L  A+  I+ EL  RL 
Sbjct: 183 RVEFFGDEVDRITYMDALENTPIQSLDSYILYAASAFIVSPQCLKKALSSIETELAQRLE 242

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
             ++E +LLE +RL+ R  +DLEM+ TTG C+ IENYSR+ TG+  GE P TL +Y  + 
Sbjct: 243 FFKQEQKLLEYERLKTRTEFDLEMMGTTGICKGIENYSRHFTGKQAGETPYTLMDYFAQK 302

Query: 469 S---LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
           +   L+ VDESHV++PQ  GMY GD  RK  L E+GFRLPS +DNRPL++EE+    P  
Sbjct: 303 NCPYLVIVDESHVSLPQFKGMYAGDLSRKQVLVEHGFRLPSALDNRPLKYEEFIQKAPHF 362

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
           + VSATP   ELE     +  QIIRPTGL+DP   +R  + QV D+   I     +  R+
Sbjct: 363 LFVSATPNPLELELSGNHVASQIIRPTGLLDPEYCLRPTQNQVNDLLKTIQSVVAKKERV 422

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+T LTKRMAE+L ++  E  ++V+Y+HS+   + R   IR LRLG+ DVL+GINLLREG
Sbjct: 423 LVTTLTKRMAEELCKHYAECGLKVQYLHSDTDVIARNHSIRALRLGEIDVLIGINLLREG 482

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+PE  LVAILDADKEGFLRS T+LIQT+GRAAR+V+ +VI YAD IT S+Q A+D T 
Sbjct: 483 LDLPEVSLVAILDADKEGFLRSSTALIQTMGRAARHVHGRVIFYADKITPSMQEAMDITD 542

Query: 706 RRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
            RR KQ+  N++H + P+ V   +   +  I L   +  N++       + K + +  +K
Sbjct: 543 SRRAKQMAFNQEHGLTPRGVNRPLEAELKEIELSKPSKKNLN------KMPKSEKERLIK 596

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +LR QM   A  L+FE AA++RDEI R++ 
Sbjct: 597 TLRAQMQERARVLDFENAAKLRDEIARIRG 626


>gi|50364873|ref|YP_053298.1| excinuclease ABC subunit B [Mesoplasma florum L1]
 gi|50363429|gb|AAT75414.1| repair endonuclease subunit B [Mesoplasma florum L1]
          Length = 615

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 297/613 (48%), Positives = 395/613 (64%), Gaps = 6/613 (0%)

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           MA +I+ + +P +V+A NK LA QLY E   FFP+N VEYFVS +D++QPEAY P TD Y
Sbjct: 1   MANIIKEINKPTLVLAHNKTLAMQLYYELMEFFPNNRVEYFVSNFDFFQPEAYKPATDLY 60

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304
           I K++ IN ++D +R SA  +L   ND IVV+SV+ IY       Y+    +LK G    
Sbjct: 61  INKDARINMELDMLRMSAMNALSISNDTIVVASVAAIYPSQDPVQYASSFFELKTGQKFS 120

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           ++ELL+ LVK  Y R DI    GTF V GD I++ P       +R S+F + IE I    
Sbjct: 121 KRELLTYLVKTGYTRNDIENSPGTFSVKGDVIKVVPGWSLSAMYRFSLFDDHIEMIDMLN 180

Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
            +TG  I  + T+ IY    YVTP   L  A   I+EEL +R+ EL++EG+LLEA+RL+Q
Sbjct: 181 VVTGALIERISTVTIYPAQAYVTPEDKLKQACLNIREELAVRVKELKEEGKLLEAERLDQ 240

Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484
           R  YDLE LE  G C  IENYS +L  R PGE P TL +Y   D L  +DESH+ + Q+ 
Sbjct: 241 RTRYDLESLEEFGFCSGIENYSAHLDFRAPGETPYTLLDYFKGDFLTIIDESHIMVSQVR 300

Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544
           GMY  D  RK TL EYGFRLPS +DNRPL FEE+       I  SATPG +ELE     +
Sbjct: 301 GMYNTDRSRKQTLVEYGFRLPSALDNRPLNFEEFTGKLKQVIYTSATPGDYELELVNHEV 360

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           VEQIIRPTGL+DP +E++    Q+ED+ ++I+   +   ++ +T LT RM+EDLT YL E
Sbjct: 361 VEQIIRPTGLLDPVIEVKKTEGQIEDIIEQIHERKKVNEKVFITTLTIRMSEDLTSYLQE 420

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           RNI+V Y+HSE+KTLER +I+ DLR G +D +VG+NLLREGLD+PE  LV +LDADK+GF
Sbjct: 421 RNIKVAYLHSELKTLERSDILNDLRRGVYDAVVGVNLLREGLDLPEVSLVCVLDADKQGF 480

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
           LR+  SLIQT GRAARN N KVI YADTI+ S+Q A+DET RRRE Q  +NK+HNI P +
Sbjct: 481 LRNTKSLIQTAGRAARNANGKVIFYADTISTSMQEAMDETNRRREIQQAYNKEHNITPVT 540

Query: 725 VKEKIMEVIDPILLEDAATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
           + +KI +      L +A    +      +     K+  +  +  +R +M  AA +L+FE+
Sbjct: 541 ITKKINQST----LSEATKKELEKIKKQKTAKGKKEAYQKTIDDIRAEMIQAAKDLDFEK 596

Query: 783 AARIRDEIKRLKS 795
           AA +RD I  L++
Sbjct: 597 AAVLRDTIIELEA 609


>gi|188024297|ref|ZP_02996985.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188018971|gb|EDU57011.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
          Length = 666

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 289/592 (48%), Positives = 390/592 (65%), Gaps = 3/592 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D    ++ + Y P+GDQ  AI +++  I+     Q+LLG TG+GKTF++A VI   Q   
Sbjct: 3   DFKKLELVSSYKPAGDQQKAIDEMVNNINQGINRQVLLGATGTGKTFSVANVIAKTQLKT 62

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LAAQL++E K  FPHN VEYFVSY+DYYQPEAY P TDTYIEK+S  N +I+
Sbjct: 63  LVLAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIE 122

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            MR S   SL  RND IVV+SV+CIY   S   +++  + L +G+S++ +++   LV+  
Sbjct: 123 MMRLSTINSLATRNDVIVVASVACIYASVSPVEFTKKNLYLHVGESIDFEQIKYKLVQLG 182

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R+D  ++ GTFR+ GD IEI P + +    RVSMFGN++E I    P+T   I   + 
Sbjct: 183 YERKDHDLLPGTFRIRGDLIEIMPGYSDKFKIRVSMFGNEVEAIDLCDPITNNVISKEQR 242

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             + + S Y+     L+ A+  IK+EL  R+    K  +L+EAQR+EQR   D+E +   
Sbjct: 243 FILRSASEYIFDDSRLSIAIDNIKKELNERVKFFLKNNQLIEAQRIEQRTKQDIEGIVEF 302

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHR 493
           G C  +ENY R+L  R P + P T+F++     +D LL VDESH+++PQ+ GMY  D  R
Sbjct: 303 GFCSGVENYYRHLEHREPFQTPWTIFDFFGYNNQDWLLIVDESHISLPQVKGMYNTDRSR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL EYGFRLPS +DNRPL ++E+N      I VSATP   E+      IV QI+RPTG
Sbjct: 363 KQTLVEYGFRLPSALDNRPLNYDEFNEKISKVIYVSATPNDEEIALSNNHIVSQIVRPTG 422

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VEIR    Q++D+ +E+ L      R  +TV+T RMAEDLT +L    ++  Y+H
Sbjct: 423 LLDPIVEIRKTEHQIDDLINELMLLKNNNQRAFITVMTIRMAEDLTNHLNNTKVKAAYLH 482

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +E+KTLER  II  LR G +D +VGINLLREGLD+PE   V I DADK GF RS  SLIQ
Sbjct: 483 NELKTLERSAIINKLRKGIYDCIVGINLLREGLDVPEVARVFIFDADKPGFFRSDKSLIQ 542

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
            IGRAARN + KVI+YADTIT+++Q+AIDET RRRE QL+ N KHNI P+++
Sbjct: 543 IIGRAARNADGKVIMYADTITQAMQVAIDETKRRREIQLDFNLKHNIVPKTI 594


>gi|261495003|ref|ZP_05991471.1| excinuclease ABC subunit B [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309319|gb|EEY10554.1| excinuclease ABC subunit B [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 531

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 282/527 (53%), Positives = 378/527 (71%), Gaps = 7/527 (1%)

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           ++SVS IYG+G V++Y QM++ L++G  + Q+E+LS L + QY R D    R TFRV GD
Sbjct: 1   MASVSAIYGLGDVDAYMQMMLHLQVGAMIGQREILSRLAELQYTRNDQAFQRSTFRVRGD 60

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I+I+P+  ++VA RV +F ++IE +S F PLTG+ +  V    IY  +HYVTPR  +  
Sbjct: 61  VIDIYPAESDEVALRVELFDDEIENLSLFDPLTGRSLGKVPRYTIYPKTHYVTPRERILE 120

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A++ IK EL  R     KE +LLE QR+ QR  +D+EM+   G C  IENYSRYL+GR  
Sbjct: 121 AIEQIKVELADRRTYFIKENKLLEEQRIAQRTQFDIEMMNELGYCSGIENYSRYLSGRKE 180

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
           GE PPTLF+Y+P D +L +DESHVT+PQI GMYRGD  RK TL +YGFRLPS +DNRPLR
Sbjct: 181 GEAPPTLFDYMPADGILVIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLR 240

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP +E+R   TQV+D+  E
Sbjct: 241 FEEFERLSPQTIYVSATPGAYELEKNPD-VVDQVVRPTGLLDPIIEVRPVATQVDDLLSE 299

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS++ T+ER+EII DLR+G FD
Sbjct: 300 IHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVERVEIIHDLRMGMFD 359

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAARN+N K ILY D IT
Sbjct: 360 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRIT 419

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------PILLEDAATTNISI 748
            S+Q AI ET RRREKQ+++N++H I PQ++ +K+ E++D      P   + A     + 
Sbjct: 420 NSMQKAITETERRREKQMKYNEEHGITPQALNKKVGELLDIGQSVKPKRGKQAVKKAENS 479

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                  S+K+ +  LK+L +QM   A +L FE+AA +RD++++LK+
Sbjct: 480 ATDYKPKSRKELEKELKTLEQQMRDFAKDLEFEKAAAVRDKLQQLKA 526


>gi|13357677|ref|NP_077951.1| excinuclease ABC subunit B [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762298|ref|YP_001752203.1| excinuclease ABC subunit B [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920171|ref|ZP_02931560.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508818|ref|ZP_02958272.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186702003|ref|ZP_02971622.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|21542297|sp|Q9PR24|UVRB_UREPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238688162|sp|B1AIA9|UVRB_UREP2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|11278008|pir||C82932 excinuclease ABC subunit B UU120 [imported] - Ureaplasma
           urealyticum
 gi|6899077|gb|AAF30526.1|AE002112_7 excinuclease ABC subunit B [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827875|gb|ACA33137.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902546|gb|EDT48835.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182675781|gb|EDT87686.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186700781|gb|EDU19063.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 666

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 287/586 (48%), Positives = 384/586 (65%), Gaps = 3/586 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D   F++ +DY P+GDQ  AI +++  I+   + Q+LLG TG+GKTF++A VI   Q   
Sbjct: 3   DFKKFELISDYKPAGDQQKAIDEMVNNINQGIQRQVLLGATGTGKTFSVANVIAKTQLKT 62

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LAAQL++E K  FPHN VEYFVSY+DYYQPEAY P TDTYIEK+S  N +I+
Sbjct: 63  LVLAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIE 122

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            MR S   SL  RND IVV+SV+CIY   S   +++  + L +G+ +E +++   LV+  
Sbjct: 123 MMRLSTINSLATRNDVIVVASVACIYASVSPIEFTKKNLYLHVGELIEFEQIKYKLVQLG 182

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R+D  ++ GTFR+ GD IEI   + +    R+SMFGN++E I    P+T   I   + 
Sbjct: 183 YERKDYDLVPGTFRIRGDLIEIMSGYSDKFKIRISMFGNEVESIDLCDPITNNIISKEQR 242

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             + + S Y+     L  A++ IK EL  R+    K  +L+EAQR+EQR   DLE +   
Sbjct: 243 FILRSASEYIFDDSRLAIAIENIKNELDERVKFFLKNNQLIEAQRIEQRTKQDLESIVEF 302

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHR 493
           G C  +ENY R+L  R P + P T+F++     +D LL VDESH+++PQ+ GM+  D  R
Sbjct: 303 GFCSGVENYYRHLEHREPFQTPWTIFDFFSYNNQDWLLIVDESHISLPQVKGMHNTDRSR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL EYGFRLPS +DNRPL ++E+N     TI VSATP   E+      IV QI+RPTG
Sbjct: 363 KQTLVEYGFRLPSALDNRPLNYDEFNKKLSKTIYVSATPNDEEIALSDNHIVSQIVRPTG 422

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP +EIR    Q++D+ +E+ L   +  R  +TV+T RMAEDLT YL    I+  Y+H
Sbjct: 423 LLDPIIEIRKTEHQIDDLINELMLLKNKNQRAFITVMTIRMAEDLTNYLNNTKIKAAYLH 482

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +E+KTLER  II  LR G +D +VGINLLREGLD+PE   V I DADK GF RS  SLIQ
Sbjct: 483 NELKTLERSVIINKLRKGIYDCVVGINLLREGLDVPEVAGVFIFDADKPGFFRSDKSLIQ 542

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
            IGRAARN + KVI+YAD IT+++Q AI+ET RRRE QL  N KHN
Sbjct: 543 IIGRAARNADGKVIMYADVITQAMQTAINETKRRREIQLAFNLKHN 588


>gi|71894082|ref|YP_278190.1| excinuclease ABC subunit B [Mycoplasma synoviae 53]
 gi|71850870|gb|AAZ43479.1| excinuclease ABC subunit B [Mycoplasma synoviae 53]
          Length = 668

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 287/664 (43%), Positives = 422/664 (63%), Gaps = 3/664 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P GDQP AI +L++GI +  K Q+LLGVTGSGKTFT+A VI+   RPAI+++
Sbjct: 4   FKLNSNFTPQGDQPKAINELVQGIKNNRKDQVLLGVTGSGKTFTIANVIKEFDRPAIILS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA+QLYSE K FFP NAVEYF+SY+DYY+PEAY   TDTYIEK+S+ N+QI+ +R 
Sbjct: 64  HNKTLASQLYSELKAFFPENAVEYFISYFDYYRPEAYKANTDTYIEKDSATNQQIEILRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  SLL R D IVV+SVS IYG  + E Y++      +   +  K+ +  L K +Y+R 
Sbjct: 124 SAYNSLLTRKDVIVVASVSAIYGALNPEVYNKSFYNFYLNQKISVKDFIIKLTKNKYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ ++ G F V GD + I P+  E    RVS   ++IEEI+  +PL    I+ V    + 
Sbjct: 184 DLDVVPGRFAVKGDLVFIAPADSETKMIRVSFSYDEIEEIAFVHPLEKTTIKKVSHYTLS 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               Y T     +T +  I+EELK R+   +   ++LEA R+ QR   D++ ++  G C+
Sbjct: 244 PGDAYATDNSIYSTVIPQIQEELKERVKYYKDNNQILEATRINQRTNNDIDDMKEFGHCK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS YL GR  G+ P T+ +Y PE+SL+F+DESH+++PQI  M+ GD  RK  L +Y
Sbjct: 304 GIENYSMYLDGRTFGQRPYTILDYFPENSLMFIDESHMSLPQIRAMHAGDRSRKNELVKY 363

Query: 501 GFRLPSCMDNRPLRFEEW-NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
            FRLPS ++NRPL F+E+ N      I +SATP ++E+ +  G +    +RPTGL+DP +
Sbjct: 364 AFRLPSALENRPLTFDEFENSFSFNKIYISATPEAYEINKTAGAVTTLYVRPTGLIDPEI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            I     Q+E +Y+ I    + G + L+  +TKR+AE+++ Y  +R I+  Y+HS+ +T 
Sbjct: 424 FIYPKENQIERIYNIIMEQRKTGEKTLVLTVTKRLAEEISNYFIDRKIKAAYIHSDHETF 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            R EI+R LR+G ++V++GINLLREG+DIPE   V ILDAD  GFLR+  SLIQ +GRAA
Sbjct: 484 VRNEILRKLRMGTYEVVIGINLLREGIDIPEVSKVIILDADSNGFLRNTKSLIQIVGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N + IL+ADTIT +I+  +++   +R+ Q+E+N+K+ I P+++ + I   I     E
Sbjct: 544 RNANGQAILFADTITSAIKEMMEDNKIKRKIQMEYNQKYRIVPKTIIKPIRGAIYNENYE 603

Query: 740 DAATTNISIDAQQLSLS--KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +A    +    +       KK   + ++ L  QM  AA   ++EEA R+RD I  +K S 
Sbjct: 604 NAMEILLKKSQKSKFSKNEKKALNSLIEDLEIQMKKAAKEYDYEEAIRLRDMIHEIKQSQ 663

Query: 798 YFQG 801
             +G
Sbjct: 664 SNKG 667


>gi|99034302|ref|ZP_01314346.1| hypothetical protein Wendoof_01000855 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 496

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 275/510 (53%), Positives = 359/510 (70%), Gaps = 17/510 (3%)

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           VSCIYG+GS ESY  MI+ L +G+ +   + LS+L   QYKR D    RG FRV GD ++
Sbjct: 1   VSCIYGLGSPESYRSMIIPLSVGNKIRINDFLSNLTDLQYKRSDARFERGYFRVRGDIVD 60

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFPSH E+ AWR+S+FG++IEEISE   +TG   + V  I I+ NS+Y+TPR  L  A++
Sbjct: 61  IFPSHYENKAWRLSLFGDEIEEISEVDAITGNVTKGVNKITIFPNSYYITPREALLQAIE 120

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            +K+EL  RL     + +++EA+RLEQR  +D+EM+ TTG C+ IENYSRYL G   G+P
Sbjct: 121 LVKKELHERLDYYYSQNKIVEAKRLEQRTNFDIEMMRTTGICKGIENYSRYLYGMEAGDP 180

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           PPTLFEY+P+D +LFVDESHVT+PQ+  MY G+  RK  L +YGFRLPS  DNRPL+FEE
Sbjct: 181 PPTLFEYLPKDVILFVDESHVTVPQVGAMYSGNEARKKKLIDYGFRLPSAFDNRPLKFEE 240

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           W  +RP T+ +SATPG +EL +   + +EQ+IRPTGL DP   ++   +Q++DV  E  +
Sbjct: 241 WEGVRPQTVYISATPGKYELAKTSNVFIEQVIRPTGLTDPICIVKPIESQIDDVIHEAQV 300

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              +G  +L+T LTK+MAE+L EY+ E N+RV Y+HS++  LERIEII  LR  + DVLV
Sbjct: 301 TIGKGFCVLITTLTKKMAENLAEYMSEMNMRVSYLHSDIAALERIEIIYKLRSKEIDVLV 360

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           G+NLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARN   +VILYAD IT S+
Sbjct: 361 GVNLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNAEGRVILYADKITGSL 420

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
             A+ ET RRR+KQ EHN  +NI P++       +I P          IS   Q+ ++++
Sbjct: 421 DRALRETERRRKKQEEHNILYNIVPKT-------IIKP----------ISNTLQERAIAE 463

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
            K   +   LRKQM   A+NL FEEAARI+
Sbjct: 464 PKVNTNKDDLRKQMIEHAENLEFEEAARIK 493


>gi|313678563|ref|YP_004056303.1| excinuclease ABC subunit B [Mycoplasma bovis PG45]
 gi|312950773|gb|ADR25368.1| excinuclease ABC, B subunit [Mycoplasma bovis PG45]
          Length = 669

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 290/659 (44%), Positives = 416/659 (63%), Gaps = 8/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L++GI +  K Q+L GVTGSGKTFT+A VI    RP +V++
Sbjct: 4   FKLHSTYAPAGDQPKAINELVEGIKNNVKEQVLQGVTGSGKTFTIANVINKFNRPVLVLS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA+QLYSE K FFP N VEYFVSY+DYY+PEAY+P +D+YI+K S  N +ID MR 
Sbjct: 64  HNKTLASQLYSELKGFFPENKVEYFVSYFDYYRPEAYIPSSDSYIDKTSKRNAEIDSMRM 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  S+L RND IVV+SVS IYG  +   Y    + +  G  + + + +  L+K+ Y R 
Sbjct: 124 SAVNSILSRNDTIVVASVSAIYGALNPYEYENNFMTIHKGQKISRNDFIRMLIKRNYFRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D     G+F V GD + I P +      RV  FG++IE I   +P+T +  ++     ++
Sbjct: 184 DANSELGSFAVKGDLVLIQPIYDNSFMIRVDFFGDEIESIKTLHPITKEVFQSYNEFLLF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               Y      +   ++  K EL  R+   EK  RLLE QR+++R+  DL+ L   G+C 
Sbjct: 244 PGDAYTVNNDIIKQTVELAKIELDERIAYFEKNNRLLETQRIKERVERDLDSLAEFGTCP 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPE-DSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
            IENYS YL  R  G+ P TL +Y  + + ++F+DESH+ +PQ+  M++GD  RK TL +
Sbjct: 304 GIENYSMYLDNRTFGQRPYTLLDYFHDKNPIVFIDESHMMMPQLRAMFKGDRSRKQTLVD 363

Query: 500 YGFRLPSCMDNRPLRFEEW-NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           YGFRLPS +DNRPL F+E+        I +SATP  +EL++  GI+    +RPTGL++P 
Sbjct: 364 YGFRLPSALDNRPLTFDEFETSFDFQKIYISATPDEYELDKTNGIVTTLFVRPTGLLNPL 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R A+ Q+ED+YDE+    ++G R L+   TK +AE+LT +  E+N ++ Y+HSE KT
Sbjct: 424 IEVRPAKGQIEDIYDELQKQKERGERTLILTTTKSLAEELTRFFMEKNEKIAYIHSEHKT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER EI+R LR G +D +VGINLLREG+D+PE  L+ +LDAD E F RS  SLIQ  GRA
Sbjct: 484 FERNEILRKLRKGIYDCVVGINLLREGIDLPEVSLIMVLDADNESFFRSTRSLIQITGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN N +VI YAD+++KS+   + + +  R+ Q ++N KHNI P+++ + I E I    +
Sbjct: 544 ARNSNGRVIFYADSVSKSMHETMLQNSEIRQIQEQYNLKHNIIPKTIIKPIPEPIHNQKM 603

Query: 739 EDAAT---TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            DA +    N +   Q   LSK +    ++ LRKQM  AA  L++E A  +RD I  L+
Sbjct: 604 TDAISFYFKNSNSKNQDEKLSKDE---LIEKLRKQMEQAAKELDYERAMEMRDIIIELR 659


>gi|298525129|ref|ZP_07012538.1| excinuclease ABC [Mycobacterium tuberculosis 94_M4241A]
 gi|298494923|gb|EFI30217.1| excinuclease ABC [Mycobacterium tuberculosis 94_M4241A]
          Length = 578

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 285/525 (54%), Positives = 375/525 (71%), Gaps = 5/525 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 48  FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 107

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 108 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 167

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 168 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 227

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 228 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 286

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 287 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 346

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 347 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 406

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 407 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 466

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 467 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 526

Query: 621 RIEIIRDL-RLGKFDVLVGINL--LREGLDIPECGLVAILDADKE 662
           R+E++R L     +DV  G +    REGLD+PE  LV ILDA K+
Sbjct: 527 RVELLRQLASWVNYDV-AGRHQAGFREGLDLPEVSLVPILDATKK 570


>gi|304373424|ref|YP_003856633.1| Excinuclease ABC subunit B [Mycoplasma hyorhinis HUB-1]
 gi|304309615|gb|ADM22095.1| Excinuclease ABC subunit B [Mycoplasma hyorhinis HUB-1]
          Length = 668

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 281/656 (42%), Positives = 415/656 (63%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI  L+ GI + +  Q+LLGVTGSGKTFTMA VI  + RP ++++
Sbjct: 17  FKLVSNFQPTGDQPKAIKALVDGIKNHKDHQVLLGVTGSGKTFTMANVIAQLNRPVLILS 76

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
             K LA+QLY+EFK FFP N VEYFVSY+D+Y+PEAY+P  D YI+K S  N  ++ MR 
Sbjct: 77  HTKTLASQLYTEFKEFFPENRVEYFVSYFDFYRPEAYLPAKDVYIDKTSQTNWDLEAMRM 136

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +L  R D IVVSSV+ IYG  + + Y Q  + L++   ++  +    LVK QY R 
Sbjct: 137 SALNALTLRRDTIVVSSVAAIYGSYNPKEYKQHFLNLELNQELKPSDFAIELVKIQYSRN 196

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            +  + G+F   GD   I P+  +    ++  FGN IE+IS+ +P+  + I+   +  I+
Sbjct: 197 QVDTVPGSFSAKGDVFIISPAWTDKYLIKIEFFGNIIEKISKIHPVDKKIIQTFTSYTIF 256

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S Y     T+ TA+K I  EL  +L   EKEG+LLE QRL +R+  D++ L   G C+
Sbjct: 257 PASAYTLSPNTIQTAIKTILTELDFQLNYFEKEGKLLEKQRLNERVLNDVDSLNNFGFCK 316

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R++  R  GE P +L +Y+PED+L+F+DESH  I Q++ MY+GD  RK +L  Y
Sbjct: 317 GIENYARHIDQREAGEQPYSLLDYLPEDALIFIDESHEMITQLNRMYKGDRSRKLSLVNY 376

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+   +   I VSATP ++E+++  G ++ Q+IRPTGL+DP +E
Sbjct: 377 GFRLPSALDNRPLKFEEFEKFKQPKIYVSATPSNYEIDKADGEVIHQLIRPTGLLDPVIE 436

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   +Q++++YD +     +  R ++   +KR AE+L+ YL  +  +V Y+HS   T E
Sbjct: 437 VRPTHSQIDEIYDLLQEQKSKNERTIILTTSKRSAEELSRYLESKKQKVYYIHSTFTTFE 496

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +I+  LR G +D ++GINLLREG+D+PE  LV +L+AD+E F RSKTSL Q +GRAAR
Sbjct: 497 RDDILIKLRKGIYDAIIGINLLREGIDLPEVSLVIVLNADEESFFRSKTSLTQFVGRAAR 556

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           + + K I +AD I+KS+   I +  R R  Q ++N  +NI P+ V + I++ I     E 
Sbjct: 557 SNHGKAIFFADKISKSMAATIADNQRNRAIQHQYNLDNNITPKPVIKPIIQQIR----EK 612

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                IS+   +   +K +    + SLRKQM  AA   N+E A  ++  I  L+ S
Sbjct: 613 DQNKIISLIHNKNKETKAEKDKLIASLRKQMKDAAREENYELAIELQQVIAELEHS 668


>gi|308049035|ref|YP_003912601.1| excinuclease ABC, B subunit [Ferrimonas balearica DSM 9799]
 gi|307631225|gb|ADN75527.1| excinuclease ABC, B subunit [Ferrimonas balearica DSM 9799]
          Length = 662

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/591 (46%), Positives = 387/591 (65%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP AIA+L++G  +    Q+L GVTGSGKT+TMA +I  ++RP +++A
Sbjct: 6   FTLHSRFPPSGDQPQAIARLVQGFEAGHSHQILKGVTGSGKTYTMASLIARLKRPTLILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E   FFP NAV +FVSYYDYYQPE Y+P +DT+I K++S+N +++R+R 
Sbjct: 66  HNKTLAAQLYEEMLGFFPDNAVHFFVSYYDYYQPEVYLPASDTFIRKDASVNARLERLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T++L+ER D +V++SVS IYG+G    Y  M + L+    +E + L S L + QY+R 
Sbjct: 126 ATTKALIERPDVVVIASVSSIYGLGDPNQYRAMQIHLEPQQKLEPESLFSQLARLQYQRS 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I   T+R     I+IFP+  +  A R+ +  + +  +    P +   +  +   ++ 
Sbjct: 186 DKKISPATYRADARGIDIFPADSDHDAIRLQIENDTLVSLQRLEPASDTLLGPLSEYRVS 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y  P+  +  A+  I+ EL  RL  L  + +  EA RLE+R+  DLE +   G C 
Sbjct: 246 PKTLYAVPQDRIQQALPAIESELIDRLNALRAQHQFTEAGRLEERVRLDLEDMAQQGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+RYL  R+P  PP TL +Y+P++ +L +DESHV +PQI  M RGD  RK TL +Y
Sbjct: 306 GMENYTRYLNERDPNRPPTTLLDYLPKNGVLMIDESHVMVPQIGAMQRGDAARKQTLIDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+  ++P T+ VSATPG +EL +     VEQIIRPTGL+DP VE
Sbjct: 366 GFRLPSSLDNRPLTFAEFESIKPQTLFVSATPGEYELRRSVTEPVEQIIRPTGLLDPVVE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q+ DV +EI        R L+T LTK  AE LTE L +  I+  Y+HS++ T +
Sbjct: 426 VRPKGDQMTDVQNEIRRRIAHDRRTLITTLTKASAEALTEQLKQAGIKAHYLHSDIVTAD 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ I++DLR G +DVL+GINLLREGLD+PE  LVAI DADK GFLRS+ +L+QTIGRAAR
Sbjct: 486 RVAILKDLRRGVYDVLIGINLLREGLDLPEVSLVAIFDADKAGFLRSEAALLQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           N +   ILY D  T ++Q AID+T  RR +Q  +N+ + I PQ+   KI++
Sbjct: 546 NADGMAILYGDKTTDAMQQAIDQTRERRTRQQRYNQTNGITPQTPSRKILD 596


>gi|330723661|gb|AEC46031.1| excinuclease ABC subunit B [Mycoplasma hyorhinis MCLD]
          Length = 653

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 280/656 (42%), Positives = 414/656 (63%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI  L+ GI + +  Q+LLGVTGSGKTFTMA VI  + RP ++++
Sbjct: 2   FKLVSNFQPTGDQPKAIKALVDGIKNHKDHQVLLGVTGSGKTFTMANVIAQLNRPVLILS 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
             K LA+QLY+EFK FFP N VEYFVSY+D+Y+PEAY+P  D YI+K S  N  ++ MR 
Sbjct: 62  HTKTLASQLYTEFKEFFPENRVEYFVSYFDFYRPEAYLPAKDVYIDKTSQTNWDLEAMRM 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +L  R D IVVSSV+ IYG  + + Y Q  + L++   ++  +    LVK QY R 
Sbjct: 122 SALNALTLRRDTIVVSSVAAIYGSYNPKEYKQHFLNLELNQELKPSDFAIELVKIQYSRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            +  + G+F   GD   I P+  +    ++  FGN IE+IS+ +P+  + I+   +  I+
Sbjct: 182 QVDTVPGSFSAKGDVFIISPAWTDKYLIKIEFFGNIIEKISKIHPVDKKIIQTFTSYTIF 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S Y     T+ TA+K I  EL  +L   EKEG+LLE QRL +R+  D++ L   G C+
Sbjct: 242 PASAYTLSPNTIQTAIKTILTELDFQLNYFEKEGKLLEKQRLNERVLNDVDSLNNFGFCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R++  R  GE P +L +Y+PED+L+F+DESH  I Q++ MY+GD  RK +L  Y
Sbjct: 302 GIENYARHIDQREAGEQPYSLLDYLPEDALIFIDESHEMITQLNRMYKGDRSRKLSLVNY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+   +   I VSATP ++E+++  G ++ Q+IRPTGL+DP +E
Sbjct: 362 GFRLPSALDNRPLKFEEFEKFKQPKIYVSATPSNYEIDKADGEVIHQLIRPTGLLDPVIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   +Q++++YD +     +  R ++   +KR AE+L+ YL  +  +V Y+HS   T E
Sbjct: 422 VRPTHSQIDEIYDLLQEQKSKNERTIILTTSKRSAEELSRYLESKKQKVYYIHSTFTTFE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +I+  LR G +D ++GINLLREG+D+PE  LV +L+AD+E F RSKTSL Q +GRAAR
Sbjct: 482 RDDILIKLRKGIYDAIIGINLLREGIDLPEVSLVIVLNADEESFFRSKTSLTQFVGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           + + K I +AD I+KS+   I +  R R  Q ++N  +NI P+ V   I++ I     E 
Sbjct: 542 SNHGKAIFFADKISKSMAATIADNQRNRAIQHQYNLDNNITPKPVIRPIIQQIR----EK 597

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                IS+   +   +K +    + SLRKQM  +A   N+E A  ++  I  L+ S
Sbjct: 598 DQNKIISLIHNKNKETKAEKDKLIASLRKQMKDSAREENYELAIELQQVIAELEHS 653


>gi|213580239|ref|ZP_03362065.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 516

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 280/516 (54%), Positives = 357/516 (69%), Gaps = 22/516 (4%)

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
           ++ L +G  ++Q+ +L  L + QY R D    RGTFRV G+ I+IFP+  +D+A RV +F
Sbjct: 1   MLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 60

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
             ++E +S F PLTGQ    V    IY  +HYVTPR  +  AM+ IK+EL  R   L   
Sbjct: 61  DEEVERLSLFDPLTGQVESTVPRYTIYPKTHYVTPRERILQAMEEIKDELADRRKVLLAN 120

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
            +LLE QRL QR  +DLEM+   G C  IENYSR+L+GR PGEPPPTLF+Y+P D LL V
Sbjct: 121 NKLLEEQRLSQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 180

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
           DESHVTIPQI GMYRGD  RK TL EYGFRLPS +DNRPL+FEE+  L P TI VSATPG
Sbjct: 181 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 240

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
           ++ELE+    +V+Q++RPTGL+DP +E+R   TQV+D+  EI   A    R+L+T LTKR
Sbjct: 241 NYELEKSGDEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 300

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAEDLTEYL E   RVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  L
Sbjct: 301 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 360

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           VAILDADKEGFLRS+ SLIQTIGRAARNVN K ILY D IT S+  AI ET RRREKQ +
Sbjct: 361 VAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQK 420

Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ---------------QLSLSKK 758
           +N++H I PQ + +K+++++       A   NI+                   +L ++ K
Sbjct: 421 YNEEHGITPQGLNKKVVDIL-------ALGQNIAKTKAKGKGKGRSTAKAGIVELDMTPK 473

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             +  +  L +QM   A NL FEEAA+IRD++ +L+
Sbjct: 474 ALQQKIHELEEQMMQHAQNLEFEEAAQIRDQLHQLR 509


>gi|269115248|ref|YP_003303011.1| UvrABC system protein B [Mycoplasma hominis]
 gi|268322873|emb|CAX37608.1| UvrABC system protein B [Mycoplasma hominis ATCC 23114]
          Length = 656

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/649 (43%), Positives = 419/649 (64%), Gaps = 8/649 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L+ G+   ++ Q+LLGVTGSGKTFTMA VI  + RP +V++
Sbjct: 4   FKLVSNYKPAGDQPQAINELVHGVLEGKEHQVLLGVTGSGKTFTMANVINQLNRPTLVIS 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA+QLYSE +  FP N VEYFVSY+D+Y+PEAY+P++D YIEK S  N+ ++ MR 
Sbjct: 64  HNKTLASQLYSELRELFPENRVEYFVSYFDFYKPEAYIPKSDLYIEKTSRNNKDLEAMRM 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +L  R D IVV+SV+ IY   + + Y Q  + ++    ++ ++LL+ LV   Y++ 
Sbjct: 124 SALNALSIRRDTIVVASVAAIYAEFNPKEYIQSFMPIESHMKIKLRDLLTKLVNLGYEKH 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  +  G F   G+ IEI P +  +   R+ MF + IE IS   PLT   +   +++ I+
Sbjct: 184 NGDLSSGQFFNKGEVIEICPGYTSENNIRIEMFDDYIERISLINPLTKSIVEVCKSLTIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y   +  +      I+ ELK R+   + + +LLEAQR+  +   D++ L+  G  +
Sbjct: 244 PATTYNVEKGYIENICNSIESELKERVAYFKSQNQLLEAQRIHDKTLNDIDSLKEFGYVK 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+RY+  R PG+ P T+F+Y+P+D+++FVDESH+ IPQI GMY GD  RK TL +Y
Sbjct: 304 GIENYARYVDKREPGQKPYTIFDYLPKDAVIFVDESHLMIPQIIGMYEGDRSRKETLIKY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+   +   I +SATPG +E+ +  G +V Q IRPTGL+DP +E
Sbjct: 364 GFRLPSALDNRPLKFNEYEEYKFPRIYMSATPGDYEINKANGELVTQYIRPTGLLDPIIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I S   Q++D++D + L  ++  R L+   TK+ AE+L+ YL E  I+  Y+H   KT E
Sbjct: 424 IHSKENQIQDIHDLLKLQIEKKERTLILTTTKKNAEELSLYLSEFKIKSAYIHDGFKTFE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI++ LR+GK+DV++GINLLREG+D+PE  L+ +L+AD  G +R   SLIQ +GRA+R
Sbjct: 484 RNEILKGLRMGKYDVVIGINLLREGIDLPEVSLICVLNADSMGLMRDARSLIQIVGRASR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-PILLE 739
           N + KVI YAD IT S+Q AI +   +R  Q+++NK+HNI P+S+ + I   I   ILLE
Sbjct: 544 NDHGKVIFYADNITTSMQKAIVDNEHKRTLQIKYNKEHNITPKSIIKPIPAPIQGSILLE 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           D    N +I     ++  KK   ++ ++ K M   A    +EEA  IRD
Sbjct: 604 D----NKAIKEANRTIHNKK---YIDNMIKHMKELARAKKYEEAIEIRD 645


>gi|215404067|ref|ZP_03416248.1| excinuclease ABC subunit B [Mycobacterium tuberculosis 02_1987]
 gi|289745930|ref|ZP_06505308.1| excinuclease ABC subunit B [Mycobacterium tuberculosis 02_1987]
 gi|289686458|gb|EFD53946.1| excinuclease ABC subunit B [Mycobacterium tuberculosis 02_1987]
          Length = 569

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 273/497 (54%), Positives = 361/497 (72%), Gaps = 1/497 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 67  FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 126

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 127 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 186

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 187 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 246

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 247 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 305

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 306 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 365

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 366 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 425

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 426 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 485

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 486 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 545

Query: 621 RIEIIRDLRLGKFDVLV 637
           R+E++R LRL  +D+LV
Sbjct: 546 RVELLRQLRLVVYDLLV 562


>gi|12044925|ref|NP_072735.1| excinuclease ABC subunit B [Mycoplasma genitalium G37]
 gi|1351388|sp|P47319|UVRB_MYCGE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|1045749|gb|AAC71291.1| excinuclease ABC, B subunit [Mycoplasma genitalium G37]
 gi|166078912|gb|ABY79530.1| excinuclease ABC, B subunit [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 656

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 294/664 (44%), Positives = 406/664 (61%), Gaps = 17/664 (2%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + N +K  + FQ+ T+Y P+GDQP AI +L +    + K Q+LLG TG+GKTFT+A VI+
Sbjct: 1   MKNQTKSNSLFQLSTNYIPTGDQPEAIKKLSE---FKTKQQVLLGATGTGKTFTIANVIQ 57

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
             Q P +V+A NK LA QL++E K  FP NAVEYF+SY+D+YQPEAY+P    YIEK ++
Sbjct: 58  NSQLPTVVIAHNKTLAGQLFNELKQLFPKNAVEYFISYFDFYQPEAYLPSKGIYIEKSAT 117

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +NE I R+R S   SL  R D IVV SV+ IY   S   + +  +   +G   + K +  
Sbjct: 118 VNEAIKRLRVSTLHSLSTRKDVIVVGSVASIYPTSSPSDFVKYCLWFVVGKDYDLKTIKD 177

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G FR  GD +E+FP + +    R+S F   +E+I +  PLT + 
Sbjct: 178 RLVSLNYVVNKQQLTPGKFRFQGDVLEVFPGYSDAFVIRISFFDTKVEQICQIDPLTNKI 237

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +  +  IKI     YV  +  L+ A+K IK+EL+ R+    K+  +  AQRL     +DL
Sbjct: 238 LNQLFEIKIGPADEYVVNQSDLDIAIKNIKQELQERVNYFNKQNLVERAQRLATITNHDL 297

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
             L+  G C  +ENY+R+L  R     P ++F+Y   D LL +DESH T+PQ++GMY  D
Sbjct: 298 NDLKAWGFCSGVENYARHLELRMANSTPYSIFDYFKGDWLLVIDESHQTLPQLNGMYNTD 357

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK +L +YGFRLPS +DNRPL F E        I VSATP   E+   Q  ++EQ++R
Sbjct: 358 LSRKQSLIDYGFRLPSALDNRPLSFAELQQKMQKVIYVSATPRDKEISLSQNNVIEQLVR 417

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PT LVDP + ++    QVED+ +EI    Q   R  +TVLT +MAE+LTEYL ER I+V 
Sbjct: 418 PTYLVDPIIVVKPKDNQVEDLIEEIINQRQNNTRTFVTVLTIKMAENLTEYLKERKIKVA 477

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+H ++K LER+ +I DLR G+++ LVGINLLREGLD+PE  LV I DAD  G  R + S
Sbjct: 478 YIHKDIKALERLLLINDLRRGEYECLVGINLLREGLDVPEVALVCIFDADIPGLPRDERS 537

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQ IGRAARN + +V++YA+ +T+ +Q AIDET RRR  Q+E+NK HN  P++V  K +
Sbjct: 538 LIQIIGRAARNEHGRVVMYANHVTEQMQKAIDETKRRRTVQMEYNKLHNKTPKTVV-KPL 596

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
             + PI L+  A +N            +K  A +K L K+M  AA N N+E A  IRD I
Sbjct: 597 TFVQPIKLK--AKSN-----------AEKNAALIKQLTKEMKKAAANQNYELAIEIRDSI 643

Query: 791 KRLK 794
             L+
Sbjct: 644 FELE 647


>gi|289447242|ref|ZP_06436986.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis CPHL_A]
 gi|289420200|gb|EFD17401.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis CPHL_A]
          Length = 510

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 270/491 (54%), Positives = 356/491 (72%), Gaps = 1/491 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 7   FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 67  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 621 RIEIIRDLRLG 631
           R+E++  LRLG
Sbjct: 486 RVELLPQLRLG 496


>gi|13507950|ref|NP_109899.1| excinuclease ABC subunit B [Mycoplasma pneumoniae M129]
 gi|2499098|sp|P75558|UVRB_MYCPN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|1674323|gb|AAB96268.1| excinuclease ABC subunit B [Mycoplasma pneumoniae M129]
 gi|301633436|gb|ADK86990.1| excinuclease ABC, B subunit [Mycoplasma pneumoniae FH]
          Length = 657

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 294/668 (44%), Positives = 414/668 (61%), Gaps = 20/668 (2%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           +KD   F +++++ P+GDQPAAIA+L +   + E  Q+LLG TG+GKTFT+A VI+ +Q 
Sbjct: 5   TKDSKLFHLKSNFAPTGDQPAAIAKLAE-FQTNE--QVLLGATGTGKTFTIANVIQKVQL 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+A NK LA QLY E K  FP+NAVEYF+SY+D+YQPEAY+P    YIEK +++NE+
Sbjct: 62  PTVVIAHNKTLAGQLYQELKELFPNNAVEYFISYFDFYQPEAYLPAKGVYIEKSATVNEE 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I R+R S   SL  R D IVV SV+ IY   S   ++Q  + L +G      EL + L+ 
Sbjct: 122 IKRLRVSTLHSLSTRKDVIVVGSVASIYPTSSPADFAQYSLWLVVGKEYGLSELKTQLIH 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y      +  G FR  GD +E+FP + +D   R+S F   +E+I+   PLT + +  +
Sbjct: 182 LNYVVNKQQLTPGKFRFQGDVVEVFPGYAQDYVLRLSFFDQQLEQIARIDPLTNKVLETL 241

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
            + K+     Y+  +  L  A+  IK ELK RL   E+      AQRL+    +DL  L+
Sbjct: 242 NSFKLGPADEYIVNQNDLGVALDTIKAELKDRLKYFERLNFPERAQRLQTITEHDLADLK 301

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE-DSLLFVDESHVTIPQISGMYRGDFHR 493
             G C  +ENY+R+L  R P   P  +F+Y  + + LL VDESH T+PQI GMY  D  R
Sbjct: 302 AWGVCSGVENYARHLEHRPPHSKPYNIFDYFTKGEWLLVVDESHQTLPQIKGMYNTDISR 361

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K +L EYGFRLPS +DNRPL +EE+       I VSATP   E++     +VEQ++RPT 
Sbjct: 362 KQSLIEYGFRLPSALDNRPLSYEEFRQGINKVIYVSATPREEEIQLSHNNVVEQLVRPTY 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP V ++    QVED+  EI    +   R  +TVLT +MAE+LT++L ERNI+V Y+H
Sbjct: 422 LLDPEVIVKPKDNQVEDLVSEIINQRKHNGRTFVTVLTIKMAENLTDFLKERNIKVAYIH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            ++K LER+ ++ DLR G+++ LVGINLLREGLD+PE  LVAI DAD  G  R + SLIQ
Sbjct: 482 KDIKALERLILLTDLRKGEYECLVGINLLREGLDVPEVSLVAIFDADIPGLPRDERSLIQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            IGRAARNV+ +VI+YA+TI++ +  AI ET RRR  Q+ +N++H+  P +V++ I  + 
Sbjct: 542 IIGRAARNVHGRVIMYANTISEQMDKAIKETQRRRTIQMAYNEQHHKTPMTVQKPIT-LN 600

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
            PI L+  +             S+++  A +K L K+M  AA N N+E A  IRD I  L
Sbjct: 601 QPIKLKTKS-------------SEQQKAALIKQLTKEMKQAAANQNYELAIEIRDSIFEL 647

Query: 794 KSSPYFQG 801
           +    F+G
Sbjct: 648 EKQ--FRG 653


>gi|237719444|ref|ZP_04549925.1| LOW QUALITY PROTEIN: excinuclease ABC subunit B [Bacteroides sp.
           2_2_4]
 gi|229451304|gb|EEO57095.1| LOW QUALITY PROTEIN: excinuclease ABC subunit B [Bacteroides sp.
           2_2_4]
          Length = 615

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 293/595 (49%), Positives = 411/595 (69%), Gaps = 14/595 (2%)

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RND 271
            K FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R SAT +LL  R D
Sbjct: 14  LKVFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKLRLSATSALLSGRKD 73

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +VVSSVSCIYG+G+   + + +++++ G  +++   L  LV   Y R DI + RG FRV
Sbjct: 74  VVVVSSVSCIYGMGNPSDFYKNVIEIERGRMMDRNVFLRRLVDSLYVRNDIDLNRGNFRV 133

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD+++I+ ++ +++  RV+ +G++I+ I E  P+TG  I   +  KIY  + ++T +  
Sbjct: 134 KGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPITGVTIAPFDAYKIYPANLFMTTKEA 192

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
              A+  I+++L  ++   E  GR  EA+RL +R+TYD+EM+   G C  IENYSRY  G
Sbjct: 193 TLRAIHEIEDDLTKQVAFFESIGREYEAKRLYERVTYDMEMIRELGHCSGIENYSRYFDG 252

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
           R  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L EYGFRLP+ MDNR
Sbjct: 253 RAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVEYGFRLPAAMDNR 312

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           PL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +E+R +  Q++D+
Sbjct: 313 PLKFEEFQEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPIIEVRPSLNQIDDL 372

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +EI L  ++  R+L+T LTKRMAE+L EYL   N+R  Y+HS+V TLER++I+ DLR G
Sbjct: 373 MEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCTYIHSDVDTLERVKIMDDLRQG 432

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
            +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAARNVN KVI+YAD
Sbjct: 433 VYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAARNVNGKVIMYAD 492

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVI------DPILLE----- 739
            +T S++L IDET RRREKQL +N+ + I PQ +K+ + + V       D +L E     
Sbjct: 493 KMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNAKEADELLKERHAYV 552

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + +T NI+ D     +SK + +  ++  RK M  AA  L F EAA+ RDE+ +L+
Sbjct: 553 EPSTPNIAADPIVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQYRDELLKLE 607


>gi|329577601|gb|EGG59034.1| excinuclease ABC, B subunit [Enterococcus faecalis TX1467]
          Length = 523

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 267/523 (51%), Positives = 364/523 (69%), Gaps = 1/523 (0%)

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           +V+SVSCI+G+G    YSQ +V L++G  +++ ELL SLV  Q++R DI   RG FRV G
Sbjct: 1   MVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDIQFERNDIDFQRGRFRVRG 60

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D +EIFP+  ++ A RV  FG++I+ I E   LTG+ +   E + I+  +H+VT    + 
Sbjct: 61  DVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETEHVAIFPATHFVTNEEHME 120

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A+  I+EEL+ RL  L  E +LLEAQRLEQR  YD+EM+   G    IENYSR++ GR 
Sbjct: 121 HAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMREMGYTSGIENYSRHMDGRQ 180

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
            GEPP TL ++ P+D LL +DESHVT+PQI GMY GD  RK  L +YGFRLPS +DNRPL
Sbjct: 181 EGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQMLVDYGFRLPSALDNRPL 240

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
           R EE+       + VSATPG +E+EQ +  +V+QIIRPTGL+DP VEIR    Q++D+  
Sbjct: 241 RLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLLDPEVEIRPIMGQIDDLVG 299

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           EI+   ++  R+ +T LTK+MAEDLT+Y  E  ++V+Y+HS+VKTLER EIIRDLRLG+F
Sbjct: 300 EIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSDVKTLERTEIIRDLRLGEF 359

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           D+L+GINLLREG+D+PE  L+AILDADKEGFLRS+ SL+QT+GRAARN   KVI+YAD I
Sbjct: 360 DILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAARNAEGKVIMYADKI 419

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           T S+Q A+DET RRR  Q  +N++H I P+++ ++I ++I      D   T + +D    
Sbjct: 420 TDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTADKDETVVQLDKSYE 479

Query: 754 SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            LS+++    L  L ++M  AA  L+FE AA +RD I  LK++
Sbjct: 480 DLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKAA 522


>gi|326903246|gb|EGE50179.1| LOW QUALITY PROTEIN: excinuclease ABC [Mycobacterium tuberculosis
           W-148]
          Length = 521

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 270/496 (54%), Positives = 355/496 (71%), Gaps = 2/496 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 28  FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 87

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 88  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 147

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 148 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 207

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 208 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 267 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 327 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 387 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV T  
Sbjct: 447 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTCA 506

Query: 621 RIEIIRDLRLGKFDVL 636
                + LRLG +DVL
Sbjct: 507 GSSCAQ-LRLGDYDVL 521


>gi|330980694|gb|EGH78797.1| excinuclease ABC subunit B [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 502

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 269/498 (54%), Positives = 350/498 (70%), Gaps = 14/498 (2%)

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           LL  L   QY R D+   R TFRV GD I+I+P+  +  A R+ +F +++E +S F PLT
Sbjct: 2   LLRRLADLQYTRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLT 61

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           G+ IR +     Y  SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  
Sbjct: 62  GEVIRKLPRFTFYPKSHYVTPRETLIEAMENIKVELQERLEYLRSQNKLVEAQRLEQRTR 121

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           +DLEM+   G C  IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY
Sbjct: 122 FDLEMMLELGYCNGIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMY 181

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
           +GD  RK TL EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G IVEQ
Sbjct: 182 KGDRSRKETLVEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQ 240

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           ++RPTGLVDP +EIR A TQV+D+  EI+  A    R+L+T LTKRM+EDLT+YL +  +
Sbjct: 241 VVRPTGLVDPQIEIRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGV 300

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RVRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS
Sbjct: 301 RVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 360

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
             SLIQTIGRAARN+N + ILYAD IT S++ AI ET RRREKQ+  N +H I P+ V +
Sbjct: 361 DRSLIQTIGRAARNLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFK 420

Query: 728 KIMEVIDPIL-----------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
            + ++++              +  AA  N   + +  S S+   +  ++ L ++M+  A 
Sbjct: 421 DVADIMEGATVPGSRSKKRKGMAKAAEENARYENELRSPSEINKR--IRQLEEKMYQLAR 478

Query: 777 NLNFEEAARIRDEIKRLK 794
           +L FE AA++RDEI +L+
Sbjct: 479 DLEFEAAAQMRDEIGKLR 496


>gi|260364874|ref|ZP_05777452.1| UvrABC system protein B [Vibrio parahaemolyticus K5030]
 gi|308113949|gb|EFO51489.1| UvrABC system protein B [Vibrio parahaemolyticus K5030]
          Length = 496

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 265/493 (53%), Positives = 353/493 (71%), Gaps = 17/493 (3%)

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVE 375
           Y R D+   RG FRV G+ I+IFP+  +  A RV MF ++++ IS F PLTG  K R++ 
Sbjct: 1   YSRNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLP 60

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              IY  +HYVTPR  +  A++ IK EL++R  +L +  +L+E QR+ QR  +D+EM+  
Sbjct: 61  RYTIYPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNE 120

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK 
Sbjct: 121 LGFCSGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKE 180

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL E+GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G I +Q++RPTGL+
Sbjct: 181 TLVEFGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLL 240

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E ++RVRY+HS+
Sbjct: 241 DPILEVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSD 300

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTI
Sbjct: 301 IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 360

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN+  K ILYAD ITKS++ A+DET RRREKQ  +N+K  I PQ++K  I ++++ 
Sbjct: 361 GRAARNIEGKAILYADNITKSMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIME- 419

Query: 736 ILLEDAATTNISIDAQQLSLSK-------------KKGKAHLKSLRKQMHLAADNLNFEE 782
             L D   +    + +Q+ LSK             ++ +  +  L   M+  A +L FE 
Sbjct: 420 --LGDITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEISRLEAAMYQHAQDLEFEL 477

Query: 783 AARIRDEIKRLKS 795
           AA  RDEI++L++
Sbjct: 478 AAEKRDEIEKLRA 490


>gi|291333201|gb|ADD92912.1| excinuclease ABC subunit B [uncultured archaeon
           MedDCM-OCT-S02-C115]
          Length = 761

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 297/744 (39%), Positives = 436/744 (58%), Gaps = 84/744 (11%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           S D+  F++ +++ P+GDQ +AI +L+  + + ++  +LLGVTGSGKTF MA +IE +  
Sbjct: 20  SPDVARFRIHSEHLPAGDQESAIEKLVSQLENNQERCVLLGVTGSGKTFAMAHIIERLNI 79

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P ++++ NK LA QL+ E    FP N VEYFVS+YDYYQPEAY+P+ D YI+KE SINE+
Sbjct: 80  PTLIISHNKTLARQLHQEMAGLFPENGVEYFVSHYDYYQPEAYLPKRDLYIDKELSINER 139

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++ R +   SL+ R DCIVVSSVSCIYG+ + E++     ++  G  +E  +L+  LV 
Sbjct: 140 IEQERFATVASLVSRPDCIVVSSVSCIYGLNAPETFLAYHCRIHTGQEIEPIDLIRELVA 199

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
            QY R    + RG  R+ G++++++ PS   D   RV      +E I    P+T + +  
Sbjct: 200 LQYTRTSSDLKRGEVRLRGENLDVWMPSR--DDPLRVRFGFEGVEHIQICDPVTWEILDE 257

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           ++   I+    ++        A++ I+ EL  R+ EL+ E + LEA RLEQR  YDLEML
Sbjct: 258 LDEAWIHPKEFFMVSPERFEAALENIETELDGRVAELKSESKELEANRLEQRTRYDLEML 317

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI----------PEDSLLFVDESHVTIPQI 483
              G C ++ENYS +  GR  GE P  L ++           P++ L+ +DESHVT+PQ+
Sbjct: 318 REIGHCTAVENYSMHFDGREHGERPYCLLDFFAATAKQFHGNPDNFLVIMDESHVTLPQV 377

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE-LEQCQ- 541
            GMY GD  RK  L E+GFRLPS  DNRPL+ +E+  L P  + VSATPG  E L  C+ 
Sbjct: 378 GGMYAGDRSRKLNLIEHGFRLPSAADNRPLKQKEFQKLVPQMLYVSATPGERELLHLCEV 437

Query: 542 ----------------GI--------------------IVEQI----IRPTGLVDPPVEI 561
                           G+                    ++E+I    IRPTGL+DP +E+
Sbjct: 438 TGQDAPLGLRHMAGGGGVDEPEYSKKHPDAESMYDMLQMIEEIPRMEIRPTGLLDPTIEV 497

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R    QV D+  EIN   + G R L+TVLT + AE++ +YL +  I+  ++HSE+ T+ER
Sbjct: 498 RDTEGQVADLLSEINARIKVGERTLVTVLTIKFAEEVAQYLNKMGIKAHHLHSEIDTIER 557

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            EII  LR+G  D +VGINLLREGLDIPE  LVAI DAD++GFLR++ SL+QTIGRAARN
Sbjct: 558 TEIINALRIGHIDTIVGINLLREGLDIPEVSLVAIFDADRQGFLRNERSLLQTIGRAARN 617

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE---KIMEVIDPILL 738
            N KVILYAD+++  +  +I +T  RRE+Q+ HN+++ I P ++++   K+   +D ++ 
Sbjct: 618 SNGKVILYADSMSPPMTASIRQTLERRERQIAHNEENGIIPTTIQKALPKMGSDVDDLIA 677

Query: 739 EDAA----------------TTNISIDAQQLSLSKKKGKA----------HLKSLRKQMH 772
             +                   N+++ A Q S S                 ++ L++ M 
Sbjct: 678 GTSGGKRLVGSKGGRKGGDWANNLNVGAGQWSRSDSVASNISQPIEEIDYSIEELKEMMQ 737

Query: 773 LAADNLNFEEAARIRDEIKRLKSS 796
            AA  L+FE AA +RD+I  ++SS
Sbjct: 738 QAALELDFERAAMLRDKILEIQSS 761


>gi|262165260|ref|ZP_06032997.1| excinuclease ABC subunit B [Vibrio mimicus VM223]
 gi|262024976|gb|EEY43644.1| excinuclease ABC subunit B [Vibrio mimicus VM223]
          Length = 511

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 263/506 (51%), Positives = 355/506 (70%), Gaps = 17/506 (3%)

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
           + Q+++L  L + QY R D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS 
Sbjct: 2   INQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISL 61

Query: 363 FYPLTGQ-KIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
           F PLTG    R++    +Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR
Sbjct: 62  FDPLTGVITSRDLARYTVYPKTHYVTPRERILEAIELIKSELQVRRQYLLDNNKLLEEQR 121

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
           + QR  +D+EM+   G C  IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+P
Sbjct: 122 ISQRTQFDIEMMNELGFCSGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVP 181

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           QI  M++GD  RK TL E+GFRLPS +DNRPL+F+E+  L P TI VSATPG +EL +  
Sbjct: 182 QIGAMFKGDRSRKETLVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPGEYELTKSG 241

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G + +Q++RPTGL+DP +E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEY
Sbjct: 242 GEVADQVVRPTGLLDPIIEVRPVATQVDDLLSEARVRAANDERILVTTLTKRMAEDLTEY 301

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L+E  ++VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADK
Sbjct: 302 LHEHGVKVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADK 361

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN 721
           EGFLRS+ SLIQTIGRAARN+N K ILYAD+ITKS++ A+DET RRREKQ  +N++ +I 
Sbjct: 362 EGFLRSERSLIQTIGRAARNINGKAILYADSITKSMRKAMDETERRREKQHAYNEQLSIT 421

Query: 722 PQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK-------------KKGKAHLKSLR 768
           PQ +K  + ++++   L D A +    +++ + L+K             ++ +  +  L 
Sbjct: 422 PQPLKRSVKDIME---LGDIAKSRKQKNSKVVPLAKVAEESATYQVLTPQQLEKEISKLE 478

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLK 794
             M+  A NL FE AA+ RDEI +L+
Sbjct: 479 AAMYQHAQNLEFELAAQKRDEIHQLR 504


>gi|227328798|ref|ZP_03832822.1| excinuclease ABC subunit B [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 441

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/437 (56%), Positives = 318/437 (72%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +++A
Sbjct: 5   FTLNSDFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMMLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTG  ++ V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHVLQTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +L+E QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEDIKVELADRKKVLLANDKLVEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINL 577
           +R   TQV+D+  EI L
Sbjct: 425 VRPVATQVDDLLSEIRL 441


>gi|254672084|emb|CBA04744.1| excinuclease ABC subunit B [Neisseria meningitidis alpha275]
          Length = 515

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/455 (53%), Positives = 334/455 (73%), Gaps = 1/455 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 35  FKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 94

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++MR 
Sbjct: 95  HNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRL 154

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+R 
Sbjct: 155 SATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERG 214

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    ++
Sbjct: 215 DLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVF 274

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G C+
Sbjct: 275 PSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCK 334

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L +Y
Sbjct: 335 GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDY 394

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP + 
Sbjct: 395 GFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEHAGQVVEQVVRPTGLVDPQII 453

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           IR   TQV+D+  EIN   Q+G R+L+T LTKRMA
Sbjct: 454 IRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMA 488


>gi|289761782|ref|ZP_06521160.1| excinuclease ABC subunit B [Mycobacterium tuberculosis GM 1503]
 gi|289709288|gb|EFD73304.1| excinuclease ABC subunit B [Mycobacterium tuberculosis GM 1503]
          Length = 554

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 253/464 (54%), Positives = 335/464 (72%), Gaps = 1/464 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 49  FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 108

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 109 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 168

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 169 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 228

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 229 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 287

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 288 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 347

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 348 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 407

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 408 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 467

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E
Sbjct: 468 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLE 511


>gi|240144767|ref|ZP_04743368.1| excinuclease ABC, B subunit [Roseburia intestinalis L1-82]
 gi|257203290|gb|EEV01575.1| excinuclease ABC, B subunit [Roseburia intestinalis L1-82]
          Length = 525

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 262/523 (50%), Positives = 357/523 (68%), Gaps = 3/523 (0%)

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           IVV+SVSCIYG+GS E Y  M+V L+ G   ++ +++ +LV  QY R D+   RGTFRV 
Sbjct: 1   IVVASVSCIYGLGSPEDYLGMMVSLRPGMEKDRDDVIRALVDIQYTRNDMDFHRGTFRVR 60

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD++EIFP++  D A RV  FG++I+ I+E   LTG+    +E   ++  SHYV P+  +
Sbjct: 61  GDTLEIFPANYGDTAVRVEFFGDEIDRITEVDVLTGEIKCELEHFAVFPASHYVVPQEKI 120

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
             A   I++EL  R+   + E +LLEAQR+ +R  +D+EML+ TG C  IENYSR+L G 
Sbjct: 121 LKACDAIEQELDERIRYFKGEDKLLEAQRISERTNFDIEMLKETGFCSGIENYSRHLAGL 180

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
             G  P TL +Y  +D L+ VDESH+TIPQI GMY GD  RK+TL +YGFRLPS  DNRP
Sbjct: 181 PAGATPHTLMDYFKDDYLIIVDESHITIPQIRGMYAGDQSRKSTLVDYGFRLPSAKDNRP 240

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           L FEE+       + VSATP  +E E  + +  EQIIRPTGL+DP V +R    Q++D+ 
Sbjct: 241 LNFEEFESKIDQMLFVSATPNVYEDEH-ELLRTEQIIRPTGLLDPEVVVRPVEGQIDDLI 299

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            E+N   +   ++L+T LTK+MAEDLT+Y+ E  IRV+Y+HS++ TLER EIIRDLRL  
Sbjct: 300 GEVNKEIKDHHKVLITTLTKKMAEDLTDYMREIGIRVKYLHSDIDTLERAEIIRDLRLDV 359

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAARN    VI+YAD 
Sbjct: 360 FDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAARNSEGHVIMYADK 419

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
           IT S+++A++ET RRRE Q  +N++H I P ++++ + E+I   + +  A   ++     
Sbjct: 420 ITDSMRVAMEETKRRREIQQAYNEEHGITPTTIQKSVRELIS--VSKKVAKEEMNFKKDP 477

Query: 753 LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            S+++ +    +  ++K+M  AA +LNFE AA  RD++  LK 
Sbjct: 478 ESMNRDELTKLIADIQKKMQKAAADLNFEAAAEYRDKMVELKG 520


>gi|326560345|gb|EGE10732.1| excinuclease ABC subunit B [Moraxella catarrhalis 46P47B1]
          Length = 453

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 253/450 (56%), Positives = 313/450 (69%), Gaps = 9/450 (2%)

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           MF ++IE+I+ F PLTG+ I++V  I IY  SHYVTP+  L  A   IKEEL  RL    
Sbjct: 1   MFDDEIEKITWFDPLTGKNIKSVPRITIYPKSHYVTPKDKLEAASATIKEELAQRLEYFR 60

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
              + +EAQR+++R  YDLEM+   G C  IENYSR+L+GR  GE PPTLF+YIP D+LL
Sbjct: 61  ANDKFIEAQRIKERTQYDLEMIGQLGYCNGIENYSRHLSGRPAGEAPPTLFDYIPSDALL 120

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           F+DESHVT+PQI  MY+GD  RK TL +YGFRLPS MDNRP++FEEW  + P TI VSAT
Sbjct: 121 FIDESHVTVPQIGAMYKGDKSRKETLVQYGFRLPSAMDNRPMKFEEWEKISPATIFVSAT 180

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
           P  +ELE+ + + VEQ++RPTGLVDP +EIR   TQV+D+  EINL      R+L+T LT
Sbjct: 181 PAQYELEKSEQV-VEQVVRPTGLVDPILEIRPVLTQVDDILGEINLKKSLDERVLITTLT 239

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           KRMAEDLT YL E  I+V Y+HS++ T+ER++II +LR G FDVLVGINLLREGLD+PE 
Sbjct: 240 KRMAEDLTSYLKEYGIKVAYLHSDIDTVERMKIIHELRTGIFDVLVGINLLREGLDMPEV 299

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
            LVAI DADKEGFLRS+ SLIQTIGRAAR+VN K ILYADTIT S+Q AIDET RRR KQ
Sbjct: 300 SLVAIFDADKEGFLRSERSLIQTIGRAARHVNGKAILYADTITPSMQKAIDETERRRAKQ 359

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI-------SIDAQQLSLSKKKGKAHL 764
           +  N++H I P+S    I + ID    E +    I        +D   L   K   K  +
Sbjct: 360 IAFNQEHGITPKSASRAITDKIDTGDDETSEVVQIVLSQALAGVDENILHSPKLLAK-EI 418

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L KQM   +  L FEEAA++RD +  LK
Sbjct: 419 ARLEKQMQALSRELKFEEAAKVRDTVIALK 448


>gi|213421127|ref|ZP_03354193.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 423

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/417 (58%), Positives = 306/417 (73%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
           GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDP 421


>gi|34763218|ref|ZP_00144181.1| Excinuclease ABC subunit B [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887098|gb|EAA24206.1| Excinuclease ABC subunit B [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 506

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 249/496 (50%), Positives = 350/496 (70%), Gaps = 16/496 (3%)

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
            + +KEL+  L+  +Y R DI   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEIS
Sbjct: 10  GISRKELMKKLIALRYDRNDIAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEIS 68

Query: 362 EFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
           E   LTGQK++ N+E I IY  + Y+T     +  +K IK++LK+ + + E + +LLEAQ
Sbjct: 69  EINTLTGQKVKKNLERIVIYPATQYLTADDDKDRIIKEIKDDLKVEVKKFEDDKKLLEAQ 128

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
           RL+QR  YDLEM+   G C+ IENYSRYL+G+NPGE P TLFEY P+D +LF+DESH+T+
Sbjct: 129 RLKQRTEYDLEMITEIGYCKGIENYSRYLSGKNPGETPDTLFEYFPKDFILFIDESHITV 188

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           PQ+ GMY GD  RK +L E GFRL + +DNRPLRFEE+      T+ +SATPG +E+E  
Sbjct: 189 PQVRGMYNGDRARKESLVENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVS 248

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
              I EQ+IRPTG+VDP +EIR  + QV+D+ DEI   A +  R+L+T LTK++AE+LTE
Sbjct: 249 DNHIAEQLIRPTGIVDPEIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKIAEELTE 308

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           Y  E  ++V+YMHS++ TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++AD
Sbjct: 309 YYIELGVKVKYMHSDIDTLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEAD 368

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
           KEGFLRS+ SL+QTIGRAARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  ++I
Sbjct: 369 KEGFLRSRRSLVQTIGRAARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYNHI 428

Query: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK--KGKAHLK----SLRKQMHLA 774
           +P+S+ ++I         ED    +  I+ ++   +KK  + KA ++     L K++   
Sbjct: 429 DPKSIVKEIA--------EDLINLDYGIEEKKFENNKKVFRNKADIEKEITKLEKKIKKL 480

Query: 775 ADNLNFEEAARIRDEI 790
            + L+FE+A  +RDE+
Sbjct: 481 VEELDFEQAIVLRDEM 496


>gi|315304695|ref|ZP_07874898.1| UvrABC system protein B [Listeria ivanovii FSL F6-596]
 gi|313626935|gb|EFR95865.1| UvrABC system protein B [Listeria ivanovii FSL F6-596]
          Length = 494

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 257/494 (52%), Positives = 341/494 (69%), Gaps = 5/494 (1%)

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
           + + +LL  LV  QY R DI   RG FRV GD +EIFP+  ++   RV  FG++IE I E
Sbjct: 3   ISRDQLLRKLVDIQYDRNDIDFQRGRFRVRGDVVEIFPASRDEHCMRVEFFGDEIERIRE 62

Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
              LTG+ I   E + I+  SH+VT    +  A+  IK EL+ RL  L  + +LLEAQRL
Sbjct: 63  VDALTGEIIGEREHVSIFPASHFVTRPDIMKKAIINIKAELEDRLKVLRADNKLLEAQRL 122

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482
           EQR  YDLEM+E  G C  IENYSR+L+ R  G  P TL +Y P+D  + +DESHVT+PQ
Sbjct: 123 EQRTNYDLEMMEEMGYCSGIENYSRHLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQ 182

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542
           I GM+ GD  RK  L ++GFRLPS +DNRPLR EE+       + +SATPG +ELE+   
Sbjct: 183 IRGMFNGDQARKQMLVDHGFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEKNPD 242

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           +I EQIIRPTGL+DP VEIR  + Q++D+ DEIN   ++  R+L+T LTK+M+EDLT YL
Sbjct: 243 VI-EQIIRPTGLLDPIVEIRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYL 301

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            E  ++V+Y+HSEVKTLERIEIIRDLRLG +DV+VGINLLREG+D+PE  LVAILDADKE
Sbjct: 302 KEAGVKVQYLHSEVKTLERIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKE 361

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
           GFLRS+ SLIQT+GRAARN N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P
Sbjct: 362 GFLRSERSLIQTMGRAARNENGRVIMYADKMTDSMRNSISETERRRKIQIEYNEKHGITP 421

Query: 723 QSVKEKIMEVIDPILLEDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFE 781
            ++K++I  +I       AA    +I    LS +SKK+    ++ +  +M  AA  L+FE
Sbjct: 422 MTIKKEIRGIIAAT---SAADEREAIKQHDLSKMSKKERDVFIEGMEHEMKEAAKALDFE 478

Query: 782 EAARIRDEIKRLKS 795
            AA +RD +  +K+
Sbjct: 479 RAAELRDALLEIKA 492


>gi|299782900|gb|ADJ40898.1| Excinuclease ABC, B subunit [Lactobacillus fermentum CECT 5716]
          Length = 457

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/436 (52%), Positives = 309/436 (70%), Gaps = 1/436 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P+GDQP AIA L KG+   +  Q+LLG TG+GKTFT++ VI+ + RP ++++
Sbjct: 10  FQLVSDYQPTGDQPEAIAALTKGVEEGDHAQILLGATGTGKTFTISNVIKNVNRPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEMKKFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ERND IVV+SVS I+G+GS   Y   +V L++G  + +  LL  LV+ Q+ R 
Sbjct: 130 SATSSLIERNDVIVVASVSSIFGLGSPAEYQNHVVSLRVGQEIPRNRLLRELVEIQFDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  E+ A RV  FG++I+ I E   LTG+ I + E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASREEKAIRVEFFGDEIDRIREVDALTGEVIGDREHVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +  KEG+LLEAQRL+QR TYD+EM+   G   
Sbjct: 250 PATHFLTSEDIMDLALPEIEADMKSQVAKFTKEGKLLEAQRLQQRTTYDIEMMREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+  R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRYMDRRKPGEPPFTLLDFFPKDFLLIVDESHQTMPQVRGMYNGDRARKQQLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL  +E+       I +SATPG +E  Q    +V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLTLKEFEGHVHQVIYMSATPGPYEEAQTDR-VVQQIIRPTGLLDPTIE 428

Query: 561 IRSARTQVEDVYDEIN 576
           +R    Q++D+  EIN
Sbjct: 429 VRPVMGQIDDLVGEIN 444


>gi|289645475|ref|ZP_06477432.1| excinuclease ABC subunit B [Frankia symbiont of Datisca glomerata]
 gi|289504715|gb|EFD25856.1| excinuclease ABC subunit B [Frankia symbiont of Datisca glomerata]
          Length = 422

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/423 (53%), Positives = 309/423 (73%), Gaps = 2/423 (0%)

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
             PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SS+NE+++R+RHSAT SLL R D +VV
Sbjct: 2   LLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSVNEEVERLRHSATMSLLTRRDVVVV 61

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +SVSCIYG+G+ E Y + +V+L++G+ +++  LL   V  QY R DI   RGT RV GD+
Sbjct: 62  ASVSCIYGLGTPEEYIKRMVRLRVGEEIDRDSLLRRFVDVQYARNDIAFTRGTLRVRGDT 121

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +E+FP + E++A R+ MFG++IE ++  +PLTG+ +R  + + ++  +HYV     +  A
Sbjct: 122 VEVFPVY-EELAVRIEMFGDEIERLAYLHPLTGEIVREAQEVFVFPATHYVAGPERMERA 180

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +  I+ EL  RL ELE++ RLLEAQRL  R TYD+EM+   G C  IENYSR++ GR  G
Sbjct: 181 IAGIETELTDRLAELERQSRLLEAQRLRMRTTYDIEMMRQVGFCSGIENYSRHIDGRVAG 240

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P TL +Y P+D LL +DESH T+PQI GM+ GD  RK  L E+GFRLPS MDNRPLR+
Sbjct: 241 SAPHTLLDYFPDDFLLVIDESHNTVPQIGGMFEGDMSRKRNLVEHGFRLPSAMDNRPLRW 300

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           EE+      T+ +SATPG +EL +  G +VEQIIRPTGL+DP V ++  R Q++D+  EI
Sbjct: 301 EEFCARIDQTVYLSATPGPYELSRADG-VVEQIIRPTGLLDPEVVLKPTRGQIDDLVGEI 359

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            + A++  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ TL R+E++  LR G+FDV
Sbjct: 360 RVRAERDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSDIDTLRRVELLTGLRKGEFDV 419

Query: 636 LVG 638
           LVG
Sbjct: 420 LVG 422


>gi|289569678|ref|ZP_06449905.1| excinuclease ABC subunit B [Mycobacterium tuberculosis T17]
 gi|289543432|gb|EFD47080.1| excinuclease ABC subunit B [Mycobacterium tuberculosis T17]
          Length = 511

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/446 (53%), Positives = 319/446 (71%), Gaps = 1/446 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 67  FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 126

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 127 PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 186

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 187 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 246

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 247 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 305

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 306 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 365

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 366 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 425

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 426 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 485

Query: 561 IRSARTQVEDVYDEINLAAQQGLRIL 586
           ++  + Q++D+  EI   A    R+L
Sbjct: 486 VKPTKGQIDDLIGEIRTRADADQRVL 511


>gi|300814257|ref|ZP_07094531.1| putative excinuclease ABC subunit B [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511630|gb|EFK38856.1| putative excinuclease ABC subunit B [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 440

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/436 (54%), Positives = 307/436 (70%), Gaps = 1/436 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI +L++G++   K Q LLGVTGSGKTFTMA VIE +QRPA+V+A
Sbjct: 3   FKIHSDYKPTGDQPQAIDKLVEGLNKGYKHQTLLGVTGSGKTFTMANVIERVQRPALVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL SE K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N++ID++RH
Sbjct: 63  HNKTLAYQLCSELKEFFPENAVEYFVSYYDYYQPEAYVPMTDTFIEKDSSVNDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G    Y  + + L+ G   ++ E++S LV  QY R 
Sbjct: 123 SATMSLFERRDVIIVASVSCIYGLGDPIDYENLAISLRPGMIRDRNEIMSKLVDIQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD +EIFP+   + + RV  FG++I+ ISE   LTG+ +R +    I 
Sbjct: 183 DFDFSRGTFRVRGDVLEIFPASSSEKSIRVEFFGDEIDRISEVDALTGKVLRLLTHAYIT 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T +  +  A+  I+EEL+ RL  L+ + +LLEAQRLEQR  YDLEMLE  G C 
Sbjct: 243 PASHYATTKTKVEKAIVTIEEELEERLKVLKDQDKLLEAQRLEQRTRYDLEMLEEMGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y P+D +  +DESH +IPQI GM+ GD  RK TL EY
Sbjct: 303 GIENYSRHLSQRPAGSRPYTLIDYFPDDFITIIDESHQSIPQIRGMFNGDRSRKETLVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF E+  +    + VSATPG +E E  +    EQIIRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLRFFEFESMMKQCMYVSATPGPYEREHEEN-SAEQIIRPTGLLDPQIF 421

Query: 561 IRSARTQVEDVYDEIN 576
           +R  + Q++D+  EIN
Sbjct: 422 VRPVKNQIDDLVSEIN 437


>gi|282908145|ref|ZP_06315976.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282327810|gb|EFB58092.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
          Length = 490

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 252/490 (51%), Positives = 337/490 (68%), Gaps = 8/490 (1%)

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG
Sbjct: 4   LGKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTG 63

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + ++  E   I+  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  Y
Sbjct: 64  EVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNY 123

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEM+   G C  IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY 
Sbjct: 124 DLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYN 183

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L ++GFRLPS +DNRPL+FEE+       + VSATPG +E+E    + VEQI
Sbjct: 184 GDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKM-VEQI 242

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGL+DP +E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+
Sbjct: 243 IRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIK 302

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y+HSE+KTLERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS 
Sbjct: 303 VNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSN 362

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +K
Sbjct: 363 RSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKK 422

Query: 729 IMEVIDPILLEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           I ++I   +  D         AQ +    ++KK+ +  + ++ K+M  AA +L+FE+A  
Sbjct: 423 IHDLISATVENDENNDK----AQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATE 478

Query: 786 IRDEIKRLKS 795
           +RD +  LK+
Sbjct: 479 LRDMLFELKA 488


>gi|219119648|ref|XP_002180579.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408052|gb|EEC47987.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 615

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 259/600 (43%), Positives = 366/600 (61%), Gaps = 25/600 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQP AIAQL   +   ++  +L G+TG+GKT  MA +I    RP +V+ 
Sbjct: 1   FRVTAKYTPTGDQPEAIAQLTHQLQRGDRFSILRGITGTGKTLVMAHLIANHGRPTLVLC 60

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL  E ++F   NAVE FVSYY++Y PE++V  T  YI K+SS+N +ID +RH
Sbjct: 61  HNKTLAAQLARELRSFLGDNAVELFVSYYNHYVPESFVEATGKYIAKKSSVNAEIDVLRH 120

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE-QKELLSSLVKQQYKR 319
            ATR+LL RND +VV+SVSCIYG+G  + Y       ++GD V    ++L+ L    ++ 
Sbjct: 121 RATRALLTRNDVVVVASVSCIYGLGLPKEYLDASWAFQLGDVVSWNDDVLTKLDTMLFEH 180

Query: 320 --QDIGIIRGTFRVCGDS------IEIFPSHLEDVAWRVSMF---------GNDIEEISE 362
              D    RGT++           + ++P+H E    R+            G  +  I E
Sbjct: 181 VVDDDLFERGTYQSSKSDEGVTTYLNVWPTH-EKCPMRIEFASVGDGAVKDGMVVRAIQE 239

Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
             P     ++ + + +I+   H+VT    L  A   I+EEL+ R+ EL  EG+ +EA RL
Sbjct: 240 GTP---SGMKPMSSARIFPAKHHVTSDDRLEQACFAIEEELQTRVQELLAEGKRIEADRL 296

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVT 479
           +QR+  D+ M+  TG C   ENYSR+L GR  G PP TL +Y+     D LL VDESHVT
Sbjct: 297 QQRVLNDVLMMRETGFCSGGENYSRHLAGREAGSPPDTLMDYMNLNTRDWLLLVDESHVT 356

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           +PQ+  MY GD  RK  L ++G+RLPS +DNRPL+ EE+      T+ VSATP   EL +
Sbjct: 357 LPQLKAMYGGDQARKHRLVKHGYRLPSALDNRPLKEEEFWSNVQQTVFVSATPAKQELGK 416

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
            +   VE +IRPT + DP +E+RS   Q++++  E+ +   +  R L+  LTKR AEDL+
Sbjct: 417 AEYPPVEMMIRPTYVCDPEIEVRSPEGQLDNLLAELRIRVDRKQRALVVTLTKRDAEDLS 476

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
            YL E  I   Y+HS + T ER + +R L++G+ D LVGIN LREGLD+P+  LVA+L+A
Sbjct: 477 SYLIEHGISSTYIHSGLSTNERSDALRALQMGEIDCLVGINCLREGLDLPQVSLVAVLNA 536

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
           D EGFLRS+T+L+Q +GRAARN   K I YA   T+++Q  ID+T  RREKQ  +N ++N
Sbjct: 537 DSEGFLRSETALLQIVGRAARNTEGKAIFYAKRTTEAMQRCIDDTDSRREKQTAYNAQNN 596


>gi|323971944|gb|EGB67165.1| excinuclease ABC [Escherichia coli TA007]
          Length = 414

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 239/409 (58%), Positives = 297/409 (72%), Gaps = 12/409 (2%)

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           M+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C  IENYSR+L+GR PG
Sbjct: 1   MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 60

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           EPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EYGFRLPS +DNRPL+F
Sbjct: 61  EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 120

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           EE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E+R   TQV+D+  EI
Sbjct: 121 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI 180

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+ER+EIIRDLRLG+FDV
Sbjct: 181 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 240

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAARNVN K ILY D IT 
Sbjct: 241 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 300

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN---------- 745
           S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++ A T           
Sbjct: 301 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQNIAKTKAKGRGKSRPI 358

Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++ +L+
Sbjct: 359 VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 407


>gi|330880879|gb|EGH15028.1| excinuclease ABC subunit B [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 374

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/366 (62%), Positives = 281/366 (76%), Gaps = 1/366 (0%)

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
           A RV +F +++E +S F PLTG+ IR +     Y  SHYVTPR TL  AM+ IK EL+ R
Sbjct: 8   AIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFYPKSHYVTPRETLIEAMEGIKVELQER 67

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  L  + +L+EAQRLEQR  +DLEM+   G C  IENYSRYL+GR  G PPPTLF+Y+P
Sbjct: 68  LEYLRTQNKLVEAQRLEQRTRFDLEMMLELGYCNGIENYSRYLSGRPSGAPPPTLFDYLP 127

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
            D+LL +DESHV++PQ+  MY+GD  RK TL EYGFRLPS +DNRP+RF+EW  + P TI
Sbjct: 128 ADALLVIDESHVSVPQVGAMYKGDRSRKETLVEYGFRLPSALDNRPMRFDEWEAISPQTI 187

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
            VSATPG++E E   G +VEQ++RPTGLVDP +EIR A TQV+D+  EI+       R+L
Sbjct: 188 FVSATPGNYEAEHA-GRVVEQVVRPTGLVDPQIEIRPALTQVDDLLSEIHKRTALEERVL 246

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +T LTKRM+EDLT+YL +  +RVRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGL
Sbjct: 247 VTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGL 306

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           D+PE  LVAILDADKEGFLRS  SLIQTIGRAARN+N + ILYAD IT S++ AI ET R
Sbjct: 307 DMPEVSLVAILDADKEGFLRSDRSLIQTIGRAARNLNGRAILYADRITGSMERAIGETER 366

Query: 707 RREKQL 712
           RR+KQL
Sbjct: 367 RRDKQL 372


>gi|90409505|ref|ZP_01217549.1| excinuclease ABC subunit B [Psychromonas sp. CNPT3]
 gi|90309389|gb|EAS37630.1| excinuclease ABC subunit B [Psychromonas sp. CNPT3]
          Length = 404

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/400 (53%), Positives = 280/400 (70%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AI  L+ GI      Q LLGVTGSGKTFT+A  I  + RP +++A
Sbjct: 5   FELHAKFSPAGDQPQAIESLVAGIEDGVAFQTLLGVTGSGKTFTLANTIAQLNRPTLILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TD++IEK+++IN  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPSTDSFIEKDAAINAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  ++Y +M++ L +G+ +  +E+L  LV  QY R 
Sbjct: 125 SATKALLERTDVVLVASVSAIYGLGDPKAYLKMMLHLSVGEFISSREILQRLVDLQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGTFRV G+ I+IFP+  E  A R+ +F +++E IS F PLTGQ +  +  + IY
Sbjct: 185 DTELSRGTFRVRGEIIDIFPADSEIEALRIELFDDEVENISVFDPLTGQTLDKLARVTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A+K IKEEL  R        +L+E QR+ +R  +D+EM+   G C 
Sbjct: 245 PKTHYVTPREQIIKAIKSIKEELVERKKSFLSNNKLIEEQRISERTLFDIEMMTELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR+ G  PPTLF+Y P  SLL +DESHVTIPQI  MY+GD  RK  L  Y
Sbjct: 305 GIENYSRYLSGRDQGAAPPTLFDYFPAKSLLIIDESHVTIPQIGAMYKGDRSRKENLVNY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           GFRLPS +DNRPL+F E+  L   TI VSATP  +E+E+ 
Sbjct: 365 GFRLPSALDNRPLKFSEFEKLAAQTIYVSATPADYEIEKS 404


>gi|309807262|ref|ZP_07701233.1| putative excinuclease ABC subunit B [Lactobacillus iners LactinV
           03V1-b]
 gi|308166353|gb|EFO68561.1| putative excinuclease ABC subunit B [Lactobacillus iners LactinV
           03V1-b]
          Length = 467

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 212/453 (46%), Positives = 308/453 (67%), Gaps = 1/453 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI QL        K Q+L G TG+GKTFTMA +I  + +P +V++
Sbjct: 10  FELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L++R D IVV+SVSCI+G+G    Y++ ++ L +G+  E+  LL  LV  QY R 
Sbjct: 130 ATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +EIFP+   +  +RV  FG++I++I E   LTG+ +   E I ++
Sbjct: 190 DLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGKCEQISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  IK+EL +++   + +G+LLEAQR++QR  YD+EM++  G   
Sbjct: 250 PATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMMQEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++  R  GEPP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +EL +    +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRTDK-VVEQIIRPTGLLDPIVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
           +R    Q++D+  EIN+  ++  R+    + ++
Sbjct: 429 VRPINGQIDDLIAEINIRIRRKERVFCDYIDQK 461


>gi|301306934|ref|ZP_07212978.1| putative excinuclease ABC subunit B [Escherichia coli MS 124-1]
 gi|300837860|gb|EFK65620.1| putative excinuclease ABC subunit B [Escherichia coli MS 124-1]
          Length = 380

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/375 (58%), Positives = 276/375 (73%), Gaps = 12/375 (3%)

Query: 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG 489
           +EM+   G C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRG
Sbjct: 1   MEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 60

Query: 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
           D  RK TL EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++
Sbjct: 61  DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 120

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           RPTGL+DP +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RV
Sbjct: 121 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 180

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           RY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ 
Sbjct: 181 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 240

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           SLIQTIGRAARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+
Sbjct: 241 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 300

Query: 730 MEVIDPILLEDAATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
           ++++   L ++ A T           +  D   + +S K  +  +  L   M   A NL 
Sbjct: 301 VDIL--ALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 358

Query: 780 FEEAARIRDEIKRLK 794
           FEEAA+IRD++ +L+
Sbjct: 359 FEEAAQIRDQLHQLR 373


>gi|323453940|gb|EGB09811.1| hypothetical protein AURANDRAFT_24596 [Aureococcus anophagefferens]
          Length = 700

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 248/591 (41%), Positives = 360/591 (60%), Gaps = 11/591 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F M+  + P+GDQPAAI  L+  +   E+  +L G TG+GKTF +A  IE + +P +V+A
Sbjct: 3   FSMRAPFPPAGDQPAAIDSLVGRLGRGERRVVLKGATGTGKTFVLAHAIEQLDKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK+LAAQLYSE + FFP  AV++FVS++DYY+PE+Y   +DTY EK S+ N++ID +RH
Sbjct: 63  PNKVLAAQLYSELREFFPDAAVKFFVSHFDYYRPESYKLASDTYSEKRSATNDRIDALRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS-VEQKELLSSLVKQQYKR 319
            ATRSL ER D IVV++VSCIYG+G  E Y    + +  G S   + EL ++++  +Y  
Sbjct: 123 DATRSLNERRDTIVVATVSCIYGLGMPEEYLSSALLVHPGQSWTGRSELEAAMLALRYGA 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHL-EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
              G  RG F    D   +    + E    ++S+   D   +     +     R+V+   
Sbjct: 183 D--GADRGGFAWTDDGAALSVGLVTEPATLKISVEAGDDALLVSDVSIVADDARSVDEYV 240

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYV     +    + + EEL   L      GR  EA+RLEQR+  D++ +   G 
Sbjct: 241 LYPASHYVATAEEIERVAQAVLEELDDDLAAFRAAGRFREARRLEQRVLADVDDMRRRGF 300

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFVDESHVTIPQISGMYRGDFHRKATL 497
           C  +ENY+R+++ R  GE P TL ++ P+D  LL VDE+HV +PQ+ GM+ GD  RK +L
Sbjct: 301 CPGMENYARHVSRRAAGEAPATLVDFFPDDDWLLVVDEAHVAVPQLRGMHAGDRARKTSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVD 556
            E GFRL S +DNRPL   E+    P  +  +ATP +   + C    +   I+RPTG+VD
Sbjct: 361 VENGFRLKSALDNRPLTDAEFWAKVPQCVFATATPNADVFDMCGDDAVTSLIVRPTGVVD 420

Query: 557 PPVEIRSARTQ--VED-VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           P V +  A     +ED +   +  AA  G R L+T LTK  AE + + L E  +   Y+H
Sbjct: 421 PVVSVVDAAAAGGLEDHLLARVAAAAAAGDRALVTTLTKASAEGIADLLTENGVAATYLH 480

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S + + +R++ +R L+ G+   LVG NLLREGLD+P   LVA++ A+K+GFLRS TSLIQ
Sbjct: 481 SGLDSGKRLDALRRLKAGELQALVGCNLLREGLDLPMVSLVAVVGAEKQGFLRSATSLIQ 540

Query: 674 TIGRAARNVNSKVILYAD--TITKSIQLAIDETTRRREKQLEHNKKHNINP 722
           TIGRAAR+V+ +V+LY D  T++ +++ AIDET  RR  QL+HN +H++ P
Sbjct: 541 TIGRAARHVDGRVLLYTDDGTVSDAMREAIDETNYRRAVQLDHNARHDVVP 591


>gi|257081024|ref|ZP_05575385.1| excinuclease ABC [Enterococcus faecalis E1Sol]
 gi|256989054|gb|EEU76356.1| excinuclease ABC [Enterococcus faecalis E1Sol]
          Length = 411

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/411 (52%), Positives = 290/411 (70%), Gaps = 1/411 (0%)

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
           +T    +  A+  I+EEL+ RL  L  E +LLEAQRLEQR  YD+EM+   G    IENY
Sbjct: 1   MTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMREMGYTSGIENY 60

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505
           SR++ GR  GEPP TL ++ P+D LL +DESHVT+PQI GMY GD  RK  L +YGFRLP
Sbjct: 61  SRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQMLVDYGFRLP 120

Query: 506 SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565
           S +DNRPLR EE+       + VSATPG +E+EQ +  +V+QIIRPTGL+DP VEIR   
Sbjct: 121 SALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLLDPEVEIRPIM 179

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            Q++D+  EI+   ++  R+ +T LTK+MAEDLT+Y  E  ++V+Y+HS++KTLER EII
Sbjct: 180 GQIDDLVGEIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSDIKTLERTEII 239

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RDLRLG+FD+L+GINLLREG+D+PE  L+AILDADKEGFLRS+ SL+QT+GRAARN   K
Sbjct: 240 RDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAARNAEGK 299

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN 745
           VI+YAD IT S+Q A+DET RRR  Q  +N++H I P+++ ++I ++I      D   T 
Sbjct: 300 VIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTADKDETV 359

Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + +D     LS+++    L  L ++M  AA  L+FE AA +RD I  LK++
Sbjct: 360 VQLDKSYEDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKAA 410


>gi|146318678|ref|YP_001198390.1| helicase subunit of the DNA excision repair complex [Streptococcus
           suis 05ZYH33]
 gi|145689484|gb|ABP89990.1| Helicase subunit of the DNA excision repair complex [Streptococcus
           suis 05ZYH33]
          Length = 403

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/390 (54%), Positives = 285/390 (73%), Gaps = 12/390 (3%)

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            E EG+LLEAQRL+QR  YD+EML   G    +ENYSR++ GR+ GEPP TL ++ PED 
Sbjct: 21  FEAEGKLLEAQRLKQRTDYDIEMLREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPEDY 80

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           L+ +DESH+T+ QI GMY GD  RK  L  YGFRLPS +DNRPLR EE+       + VS
Sbjct: 81  LIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVS 140

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
           ATPG +E+EQ +  +VEQIIRPTGL+DP VE+R    Q++D+  EIN   ++G R  +T 
Sbjct: 141 ATPGDYEMEQTE-TVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARVEKGERTFITT 199

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           LTK+MAEDLT+YL E  ++V+YMHS++KTLER EIIRDLRLG FDVL+GINLLREG+D+P
Sbjct: 200 LTKKMAEDLTDYLKEMGVKVKYMHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVP 259

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           E  LVAILDADKEGFLR++  LIQTIGRAARN    VI+YAD +T+S++ A++ET RRR+
Sbjct: 260 EVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADKVTESMRKAMEETARRRQ 319

Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL----SLSKKKGKAHLK 765
            Q+ +N++H I PQ++K++I ++I       + T  ++ D +++    +L+K + KA +K
Sbjct: 320 IQMAYNEEHGIIPQTIKKEIRDLI-------SVTKAVTQDKEEVVDFNALNKDERKAMIK 372

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            L  QM  AA+ L+FE AA+IRD +  LK+
Sbjct: 373 KLEGQMQEAAEVLDFELAAQIRDMVIELKN 402


>gi|256045131|ref|ZP_05448032.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1]
 gi|265991567|ref|ZP_06104124.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1]
 gi|263002351|gb|EEZ14926.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1]
          Length = 393

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/359 (57%), Positives = 267/359 (74%), Gaps = 20/359 (5%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK-GEFQSQSSISMSEKQTRE------ 93
           +AD  + I  EA K R KN  +   I +R   AS+ G   S    + ++++T        
Sbjct: 36  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 95

Query: 94  -----------ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
                      +S    T +VQALA LIQS NPL K+G++WTPHR          I   +
Sbjct: 96  GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 154

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE  QRPA+++APN
Sbjct: 155 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 214

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 215 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 274

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 275 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 334

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
             +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYA
Sbjct: 335 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYA 393


>gi|254226407|ref|ZP_04919995.1| excinuclease ABC subunit B [Vibrio cholerae V51]
 gi|125621096|gb|EAZ49442.1| excinuclease ABC subunit B [Vibrio cholerae V51]
          Length = 365

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/361 (55%), Positives = 263/361 (72%), Gaps = 1/361 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDVVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG  + R++    I
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVIMSRDLARFTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 Y 500
           +
Sbjct: 365 F 365


>gi|258545354|ref|ZP_05705588.1| excinuclease ABC subunit B [Cardiobacterium hominis ATCC 15826]
 gi|258519387|gb|EEV88246.1| excinuclease ABC subunit B [Cardiobacterium hominis ATCC 15826]
          Length = 349

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/345 (57%), Positives = 253/345 (73%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y PSGDQP AIAQLL+G+      Q LLGVTGSGKTFTMA +I   QRPA+++A
Sbjct: 5   FQLVSNYQPSGDQPTAIAQLLEGLEDGLAKQTLLGVTGSGKTFTMANIIARAQRPALILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E + FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR 
Sbjct: 65  PNKTLAAQLYGEMREFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D IVV+SVS IYG+G    Y QM + L  G++++  ++ S L + QY R 
Sbjct: 125 SATKAILERRDTIVVASVSSIYGLGDPSQYRQMRLHLSRGETIDPHDVFSHLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI ++RGTFRV GD I+I P+  +  A R+ +F + IE I  F PLTG+    V  I IY
Sbjct: 185 DIQLLRGTFRVKGDVIDIMPAESDWYAVRLELFDDTIENIRYFDPLTGEMHEAVPRITIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY TPR T+   ++ IK EL+ R+  L  + +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 245 PKTHYATPRATVLNTIEQIKAELRERVAALTAQNKLVEAQRLEQRTRFDLEMMVELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
            IENYSRYL+GR  GEPPPTL +Y+P D+LL +DESHVTIPQ++G
Sbjct: 305 GIENYSRYLSGREAGEPPPTLHDYLPPDALLMIDESHVTIPQLNG 349


>gi|256027142|ref|ZP_05440976.1| excinuclease ABC subunit B [Fusobacterium sp. D11]
          Length = 387

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/382 (54%), Positives = 276/382 (72%), Gaps = 14/382 (3%)

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           +LLEAQRL+QR  YDLEM+   G C+ IENYSRYL G+NPGE P TLFEY P+D LLF+D
Sbjct: 4   KLLEAQRLKQRTEYDLEMITEIGYCKGIENYSRYLAGKNPGETPDTLFEYFPKDFLLFID 63

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           ESH+T+PQI GMY GD  RK +L E GFRL + +DNRPLRFEE+      T+ +SATPG 
Sbjct: 64  ESHITVPQIRGMYNGDRARKESLVENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGD 123

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           +ELE     I EQ+IRPTG+VDP +EIR  + QV+D+ DEI   A +  R+L+T LTK++
Sbjct: 124 FELEVSDNHIAEQLIRPTGIVDPEIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKI 183

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE+LTEY  E  ++V+YMHS++ TLERIEIIR LR G+ DV++GINLLREGLDIPE  LV
Sbjct: 184 AEELTEYYIELGVKVKYMHSDIDTLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLV 243

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
           AI++ADKEGFLRS+ SL+QTIGRAARNV  +VILYAD +T S++ AI ET RRR+ Q E+
Sbjct: 244 AIMEADKEGFLRSRRSLVQTIGRAARNVEGRVILYADIMTDSMKEAITETERRRKIQKEY 303

Query: 715 NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK--KGKAHLK----SLR 768
           N  ++I+P+S+ ++I         ED    +  I+ ++   +KK  + KA ++     L 
Sbjct: 304 NAYNHIDPKSIVKEIA--------EDLINLDYGIEEKKFENNKKVFRNKADIEKEITKLE 355

Query: 769 KQMHLAADNLNFEEAARIRDEI 790
           K++    + L+FE+A  +RDE+
Sbjct: 356 KKIKKLVEELDFEQAIILRDEM 377


>gi|289765122|ref|ZP_06524500.1| excinuclease ABC subunit B [Fusobacterium sp. D11]
 gi|289716677|gb|EFD80689.1| excinuclease ABC subunit B [Fusobacterium sp. D11]
          Length = 389

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/382 (54%), Positives = 276/382 (72%), Gaps = 14/382 (3%)

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           +LLEAQRL+QR  YDLEM+   G C+ IENYSRYL G+NPGE P TLFEY P+D LLF+D
Sbjct: 6   KLLEAQRLKQRTEYDLEMITEIGYCKGIENYSRYLAGKNPGETPDTLFEYFPKDFLLFID 65

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           ESH+T+PQI GMY GD  RK +L E GFRL + +DNRPLRFEE+      T+ +SATPG 
Sbjct: 66  ESHITVPQIRGMYNGDRARKESLVENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGD 125

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           +ELE     I EQ+IRPTG+VDP +EIR  + QV+D+ DEI   A +  R+L+T LTK++
Sbjct: 126 FELEVSDNHIAEQLIRPTGIVDPEIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKI 185

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE+LTEY  E  ++V+YMHS++ TLERIEIIR LR G+ DV++GINLLREGLDIPE  LV
Sbjct: 186 AEELTEYYIELGVKVKYMHSDIDTLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLV 245

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
           AI++ADKEGFLRS+ SL+QTIGRAARNV  +VILYAD +T S++ AI ET RRR+ Q E+
Sbjct: 246 AIMEADKEGFLRSRRSLVQTIGRAARNVEGRVILYADIMTDSMKEAITETERRRKIQKEY 305

Query: 715 NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK--KGKAHLK----SLR 768
           N  ++I+P+S+ ++I         ED    +  I+ ++   +KK  + KA ++     L 
Sbjct: 306 NAYNHIDPKSIVKEIA--------EDLINLDYGIEEKKFENNKKVFRNKADIEKEITKLE 357

Query: 769 KQMHLAADNLNFEEAARIRDEI 790
           K++    + L+FE+A  +RDE+
Sbjct: 358 KKIKKLVEELDFEQAIILRDEM 379


>gi|218262779|ref|ZP_03477137.1| hypothetical protein PRABACTJOHN_02816 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223139|gb|EEC95789.1| hypothetical protein PRABACTJOHN_02816 [Parabacteroides johnsonii
           DSM 18315]
          Length = 393

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/391 (50%), Positives = 268/391 (68%), Gaps = 3/391 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA L  GI S    Q LLGVTGSGKTFT+A VI+ +++P ++++
Sbjct: 3   FELSSPFSPTGDQPEAIAALSDGIKSGVPFQTLLGVTGSGKTFTIANVIKEVRKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+  IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLPTTDTYIEKDLQINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVVSSVSC+YG+    ++++ +V L+ G  +++ +LL   V   Y  
Sbjct: 123 RATASLLSGRKDVIVVSSVSCLYGMADPTAFAEKVVHLEKGMRIDRDKLLRRFVDALYVN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
             I   RG FRV GD+++IFP+    +  A+R+  + ++++ IS F P TGQ+I   + +
Sbjct: 183 NKIEFNRGCFRVNGDTVDIFPAIETFDGAAYRIEFWDDEVDRISSFDPQTGQEIDEQDEL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + +VT +  +NTA+  I  +L  ++  L + G+  EA+RL +R+T+DLEM+   G
Sbjct: 243 NIYPTNLFVTTQERINTAIGQIDVDLGTQVNFLREIGKPYEAKRLYERVTFDLEMIRELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR  GE P  L +Y P+D LL VDESHVTIPQI  MY GD+ RK  L
Sbjct: 303 HCSGIENYSRYFDGRQAGERPFCLLDYFPKDFLLVVDESHVTIPQIRAMYGGDYSRKKNL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
            EYGFRLP+ MDNRPL F+E+  L P  I V
Sbjct: 363 VEYGFRLPAAMDNRPLMFDEFESLTPLAIYV 393


>gi|308811182|ref|XP_003082899.1| excinuclease ABC subunit B (ISS) [Ostreococcus tauri]
 gi|116054777|emb|CAL56854.1| excinuclease ABC subunit B (ISS) [Ostreococcus tauri]
          Length = 1294

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 238/610 (39%), Positives = 350/610 (57%), Gaps = 41/610 (6%)

Query: 147 YHPSGDQPAAI---AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNK 203
           + PSGDQP+AI   A LL+      K   L G TG+GKTF +A V+  M +PA+V+ PNK
Sbjct: 13  FAPSGDQPSAIEKCAALLR--DGDRKYVCLRGATGTGKTFVVANVLAGMDKPALVVVPNK 70

Query: 204 ILAAQLYSEFKNFFPH-NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
            LAAQ+  E + +    + VE FVS++  Y PE+Y      Y EK S+I+  +D +RH A
Sbjct: 71  TLAAQVARELRAYLGETHRVELFVSHFSVYVPESY--SNGRYTEKRSAIDADLDALRHRA 128

Query: 263 TRSLLERNDC-IVVSSVSCIYGIGSVESYSQMIVQLKIGD--SVEQKELLSSLVKQQ--Y 317
           TR+L+E     ++V+SVSC+YG+G    Y    + ++IG   SV     L S ++    Y
Sbjct: 129 TRALVEPGKTPVIVASVSCLYGLGLPTDYVDAALTIEIGAAASVHGIRGLESKLRDDLLY 188

Query: 318 KR--QDIGIIRGTFRVCGD-------SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           +R    + + RG F+           ++EI+P +LE  A  + +  ND   +S       
Sbjct: 189 ERVMPYMEVERGQFKTSPAPDDENCFTVEIWPPYLES-ALELRVRENDGTVVS-----CQ 242

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
            +  ++ ++ I+   HY+TP   L  A+  I+ EL+ +   L  EG  +EA RLEQR   
Sbjct: 243 SRGCSMHSLTIWPRVHYITPAERLQRALVSIQNELEEQSKMLRGEGFAIEADRLEQRTNA 302

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP---------EDSLLFVDESHVT 479
           DL++L   G C   E+YSR+L G  P EPP TL +Y            D +L  DESHV 
Sbjct: 303 DLQLLRELGWCPGAEHYSRHLRGARPEEPPVTLLDYFSYSADGSKQKRDWILVADESHVM 362

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG----SW 535
           +PQ+  M+ GD  RK +L   G+RLPS +DNRPL  EE+    P  ++VSATPG    SW
Sbjct: 363 LPQLRAMHGGDRSRKLSLVAAGYRLPSALDNRPLMSEEFWERVPQALLVSATPGDIETSW 422

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
              +    +V+ ++RP+G++DPPV I     Q+E +   ++  A+ G R L+ VLTK   
Sbjct: 423 VGGKSSDAMVDMVVRPSGVLDPPVHIIGKENQLEQLAQRVSEKAKLGERSLVCVLTKADT 482

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL+ YL  + +R  ++HSE+   +R E +  L+ G+ D +VG  LLREGLD+P   LVA
Sbjct: 483 EDLSMYLNAQGVRADWVHSELTAPQRAEKLSKLQRGELDCIVGAQLLREGLDLPSVSLVA 542

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDAD  GF+RS  SL+Q  GRAARN + + +L+AD++T +++  + E  RRREKQ  HN
Sbjct: 543 ILDADVPGFMRSARSLMQMAGRAARNKHGECVLFADSVTGAMRDMMSEVDRRREKQHRHN 602

Query: 716 KKHNINPQSV 725
            ++N+ P + 
Sbjct: 603 VENNLTPTTA 612


>gi|145356578|ref|XP_001422505.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582748|gb|ABP00822.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 690

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 241/607 (39%), Positives = 345/607 (56%), Gaps = 41/607 (6%)

Query: 147 YHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKIL 205
           + PSGDQP+AI +  + +  R+ K   L G TG+GKT+ +A V+ A ++PA+V+ PNK L
Sbjct: 77  FEPSGDQPSAIERCKELLSDRDRKFVCLRGATGTGKTYVVANVLAAQRKPALVVVPNKTL 136

Query: 206 AAQLYSEFKNFFPHNA-VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
           AAQ+  E + +   +  VE FVS++  Y PE+Y      Y EK S+I+  +D +RH ATR
Sbjct: 137 AAQVARELRAYLGESHRVELFVSHFSVYVPESY--SNGRYTEKRSAIDSDLDALRHRATR 194

Query: 265 SLLERNDC-IVVSSVSCIYGIGSVESYSQMIVQLKIG--------DSVEQKELLSSLVKQ 315
           +L+E     +VV+SVSC+YG+G    Y    + ++IG        D VE K     L ++
Sbjct: 195 ALVEPGKTPVVVASVSCLYGLGLPTDYVDAALTIEIGASASTFGIDGVEDKLRDDLLYER 254

Query: 316 QYKRQDIGIIRGTFRVCGD-------SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
                DI   RG ++           +I I+P +LE  A  V + G+D   ++       
Sbjct: 255 VMPYMDIE--RGQYKTTAAPDDDNCFTITIWPPYLES-ALDVRVRGDDGVVVA-----CE 306

Query: 369 QKIRNVE-TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
            + R V+  + I+   HY+TP   L  A+  IK EL  +  +L  EG  +EA RLEQR  
Sbjct: 307 ARGRRVDLPLTIWPRVHYITPAERLQRALVSIKAELDEQTKKLRAEGCAIEADRLEQRTN 366

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP--------EDSLLFVDESHVT 479
            DL +L   G C   E+YSR+L    P EPP TL +Y           D LL  DESHV 
Sbjct: 367 ADLTLLRELGWCPGAEHYSRHLRCAKPEEPPVTLLDYFSYSADSQTRRDWLLVADESHVM 426

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           +PQ+  M+ GD  RK  L   G+RLPS +DNRPL  EE+    P  ++VSATPG  E E 
Sbjct: 427 LPQLRAMHGGDRSRKTALVGAGYRLPSALDNRPLMSEEFWQRVPQALLVSATPGDIETEW 486

Query: 540 CQG----IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
             G     +V+ ++RP+G++DPPV +     Q+E +   +N  A+ G R L+ VLTK   
Sbjct: 487 VGGKSSDAMVDMVVRPSGVLDPPVHVVGKENQLEALAQRVNEKAKIGERSLVCVLTKADT 546

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL+ YL    +R  ++HSE+   +R E +  L+ G+ D +VG  LLREGLD+P   LVA
Sbjct: 547 EDLSMYLNAHGVRADWVHSELTAPQRAEKLSKLQQGELDCIVGAQLLREGLDLPSVSLVA 606

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDAD  GF+RS  SL+Q  GRAARN N + +L+AD+IT +++  ++E  RRR KQ +HN
Sbjct: 607 ILDADIPGFMRSARSLMQMAGRAARNKNGECVLFADSITAAMKEMMNEVDRRRVKQHKHN 666

Query: 716 KKHNINP 722
             +N+ P
Sbjct: 667 VDNNLVP 673


>gi|218515691|ref|ZP_03512531.1| excinuclease ABC subunit B [Rhizobium etli 8C-3]
          Length = 371

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/294 (65%), Positives = 235/294 (79%), Gaps = 5/294 (1%)

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           MDNRPLRFEEW+ +RP TI VSATPG+WE+EQ  G+  EQ+IRPTGL+DPPVE+RSARTQ
Sbjct: 1   MDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQSGGVFAEQVIRPTGLIDPPVEVRSARTQ 60

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           V+DV  EI   A +G R L TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRD
Sbjct: 61  VDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRD 120

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVI
Sbjct: 121 LRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVI 180

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           LYAD +T S+Q A+DET RRREKQ+ +N ++ I P+SVK KI +++D +   D    +IS
Sbjct: 181 LYADQVTGSMQRAMDETGRRREKQMAYNLENGITPESVKAKISDILDSVYERDHVRADIS 240

Query: 748 -IDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +  +  +    L     +AHL +L K M  AA +L+FE+AAR+RDEIKRLK++
Sbjct: 241 GVSGKGFADGGNLVGNNLQAHLNALEKSMRDAAADLDFEKAARLRDEIKRLKAA 294


>gi|196018038|ref|XP_002118717.1| hypothetical protein TRIADDRAFT_62734 [Trichoplax adhaerens]
 gi|190578390|gb|EDV18796.1| hypothetical protein TRIADDRAFT_62734 [Trichoplax adhaerens]
          Length = 300

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 178/300 (59%), Positives = 239/300 (79%)

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           MA +IE  QRPA++MA NK LAAQLY+E KNFFP+NAVEYFVSYYDYYQPEAY+P++D+Y
Sbjct: 1   MANIIEKCQRPALIMAHNKTLAAQLYNEMKNFFPNNAVEYFVSYYDYYQPEAYIPQSDSY 60

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304
           IEK++ INEQID +RHSATR+LLER D IVV+SVSCIYG+G+ E Y QM  +L+ G +  
Sbjct: 61  IEKDAQINEQIDLLRHSATRALLERKDVIVVASVSCIYGLGAPELYLQMSFKLEKGKTYS 120

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           ++E++  L++ QY+R D+   RG FRV G++I++FPSH +D AWR+S + +++E+I EF 
Sbjct: 121 RREVMQKLIELQYQRMDLDFSRGGFRVRGENIDVFPSHYQDRAWRISFWDDEVEKIYEFD 180

Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
            LTG+K +N+  I I+ANSHYVTPRPTL  A+  I++EL  R+ + +    ++E+QR+ Q
Sbjct: 181 YLTGEKTKNLNEIIIFANSHYVTPRPTLEQAVNLIQDELSERVEKFKLGNMVVESQRIAQ 240

Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484
           R  +D+EM+  T SC+ IENYSRYL+GR  GEPPPTLFEY+P+D+LLFVDESHVT+PQI 
Sbjct: 241 RTNFDIEMIMETSSCKGIENYSRYLSGRKEGEPPPTLFEYLPKDALLFVDESHVTVPQIG 300


>gi|313632009|gb|EFR99124.1| UvrABC system protein B [Listeria seeligeri FSL N1-067]
          Length = 364

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/366 (54%), Positives = 264/366 (72%), Gaps = 5/366 (1%)

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+E  G C  IENYSR+L+ R  G  P TL +Y P+D  + +DESHVT+PQI GM+ GD
Sbjct: 1   EMMEEMGYCSGIENYSRHLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQIRGMFNGD 60

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK  L ++GFRLPS +DNRPLR EE+       + +SATPG +ELE+   +I EQIIR
Sbjct: 61  QARKQMLVDHGFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEKNPDVI-EQIIR 119

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DP VEIR  + Q++D+ DEIN   ++  R+L+T LTK+M+EDLT YL E  ++V+
Sbjct: 120 PTGLLDPIVEIRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQ 179

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSEVKTLERIEIIRDLRLG +DV+VGINLLREG+D+PE  LVAILDADKEGFLRS+ S
Sbjct: 180 YLHSEVKTLERIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERS 239

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQT+GRAARN N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P ++K++I 
Sbjct: 240 LIQTMGRAARNENGRVIMYADKMTDSMRNSISETERRRKIQIEYNEKHGITPMTIKKEIR 299

Query: 731 EVIDPILLEDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            +I       AA    +I    LS +SKK+    ++ +  +M  AA  L+FE AA +RD 
Sbjct: 300 GIIAAT---SAADEREAIKQHDLSKMSKKERDVFIEGMEHEMKEAAKALDFERAAELRDA 356

Query: 790 IKRLKS 795
           +  +K+
Sbjct: 357 LLEIKA 362


>gi|168069736|ref|XP_001786560.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162661005|gb|EDQ48628.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/322 (59%), Positives = 240/322 (74%), Gaps = 1/322 (0%)

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           +G+LLEAQRLEQR  YD+EM++  G C  IENYS  LT R  G  P TL +Y P+D L+ 
Sbjct: 22  QGKLLEAQRLEQRTRYDIEMMKEVGFCSGIENYSGPLTFRERGATPYTLLDYFPDDMLIV 81

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           VDESHVT+PQI  MY GD  RK  L E+GFRLPS +DNRPL FEE+       I VSATP
Sbjct: 82  VDESHVTLPQIRAMYNGDRARKTVLVEHGFRLPSALDNRPLTFEEFESKVNQIIYVSATP 141

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
           G +E+E C   +VEQIIRPTGL+DP +E+R    Q++D+  EI     +  R+L+T LTK
Sbjct: 142 GPYEIEHCD-TMVEQIIRPTGLLDPVIEVRPTEGQIDDLIGEIRERIDRDERVLVTTLTK 200

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           +MAEDLT+YL E  I+VRY+HS++KTLER+ I+RDLRLG F VL+GINLLREGLD+PE  
Sbjct: 201 KMAEDLTDYLKEIGIKVRYLHSDIKTLERMAILRDLRLGTFHVLIGINLLREGLDLPEVS 260

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           LVAILDADKEGFLRS+ SLIQTIGRAARN    V++Y D IT+S+  AI ET RRR  Q+
Sbjct: 261 LVAILDADKEGFLRSERSLIQTIGRAARNSEGFVLMYGDKITESMDKAIKETQRRRTMQI 320

Query: 713 EHNKKHNINPQSVKEKIMEVID 734
            +N++H I PQ++++K+ +VI+
Sbjct: 321 AYNEQHGITPQTIRKKVRDVIE 342


>gi|12620111|gb|AAG60567.1|AF250772_1 excision nuclease subunit B [uncultured bacterium pCosHE1]
          Length = 333

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/332 (56%), Positives = 234/332 (70%)

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTG     ++
Sbjct: 2   QYTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGHVESVIQ 61

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              IY  +HYVTPR  +  AM+ IKEEL  R   L    +LLE QRL QR  +DLEM+  
Sbjct: 62  RYTIYPKTHYVTPRERIVQAMEEIKEELAERRKVLLANNKLLEEQRLSQRTQFDLEMMNE 121

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK 
Sbjct: 122 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKE 181

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL EYGFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+
Sbjct: 182 TLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLL 241

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +E+R   TQV+D+  EI   +    R+L+T LTKRM EDLTEYL E   + RY HS+
Sbjct: 242 DPVIEVRPVATQVDDLLSEIRARSAINERVLVTTLTKRMGEDLTEYLEEHGEKGRYFHSD 301

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           + T+ER+EIIRDLRLG    L GINLLR GLD
Sbjct: 302 IDTVERMEIIRDLRLGDLTCLGGINLLRXGLD 333


>gi|255523394|ref|ZP_05390363.1| type III restriction protein res subunit [Clostridium
           carboxidivorans P7]
 gi|255512852|gb|EET89123.1| type III restriction protein res subunit [Clostridium
           carboxidivorans P7]
          Length = 337

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/332 (53%), Positives = 240/332 (72%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI  ++K I+ +EK Q LLGVTGSGKTFTMA +IE +++P +V+A
Sbjct: 4   FKIHSKFKPTGDQPQAIDSIVKSINDKEKFQTLLGVTGSGKTFTMANIIERVKKPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP N VEYFVSYYDYYQPEAYV +TDTYIEK++SIN++ID++RH
Sbjct: 64  HNKTLAAQLCSEFREFFPENCVEYFVSYYDYYQPEAYVAQTDTYIEKDASINDEIDKLRH 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D +VV+SVSCIYG+G+ E Y ++ + L+ G + ++ E+L  LV+ QY+R 
Sbjct: 124 SATSALLERTDVVVVASVSCIYGLGNPEEYKKLTLSLREGMTKDRDEVLKKLVEIQYERN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I  +RGTFRV GD ++IFP+     A R+  FG++I+ I EF  LTG+ I   + + I+
Sbjct: 184 EINFVRGTFRVKGDVLDIFPASSSGKAIRIEFFGDEIDRIKEFDALTGETIGTRKHVSIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T R  L  A+K I+ EL+ R+ EL  + +LLEAQRL+QR  +D+EM+   G C 
Sbjct: 244 PASHFATSRERLEIAIKSIESELEERVRELTSQDKLLEAQRLKQRTNFDIEMMREVGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
            IENYSR L GR  G PP TL +Y PED   F
Sbjct: 304 GIENYSRILDGRAKGTPPQTLIDYFPEDYFTF 335


>gi|291533169|emb|CBL06282.1| Helicase subunit of the DNA excision repair complex [Megamonas
           hypermegale ART12/1]
          Length = 346

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/328 (54%), Positives = 237/328 (72%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P+GDQP AI  L +GI + +  Q+LLG TG+GKTFT+AK+IE +Q+P +V+A
Sbjct: 18  FKVEAPFEPTGDQPQAIKALAQGIQNGQTSQVLLGATGTGKTFTIAKLIEKVQKPTLVIA 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFPHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN++ID++RH
Sbjct: 78  HNKTLAAQLASEFKEFFPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDEIDKLRH 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+GS E Y  +++ ++ G    + ++L  LV  QY+R 
Sbjct: 138 SATCSLFERRDVIIVASVSCIYGLGSPEDYYDLVLSVREGQEYPRDDILRKLVSIQYERN 197

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD IEIFP+   D A R+ +FG++++ I E   LTG+     + I IY
Sbjct: 198 DINFDRGKFRVRGDVIEIFPAGYSDRAIRIELFGDEVDRILEVDTLTGEVYGQRKHILIY 257

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +  +  A+  I+EEL+ +L  LE + +LLEAQRL+QR  YDLE +E  G C 
Sbjct: 258 PASHYVTSKEHMKEAIDSIQEELQQQLKILEDDNKLLEAQRLKQRTNYDLETMEEMGYCS 317

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPED 468
            IENYSR+LTGR  GE P TL +Y P+D
Sbjct: 318 GIENYSRHLTGRKAGEAPYTLLDYFPDD 345


>gi|269968277|ref|ZP_06182302.1| putative UvrABC system protein B [Vibrio alginolyticus 40B]
 gi|269827103|gb|EEZ81412.1| putative UvrABC system protein B [Vibrio alginolyticus 40B]
          Length = 334

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 180/331 (54%), Positives = 244/331 (73%), Gaps = 16/331 (4%)

Query: 478 VTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537
           +T+PQI  MY+GD  RK TL E+GFRLPS +DNRPL+FEE+  L P TI VSATPG++EL
Sbjct: 1   MTVPQIGAMYKGDRSRKETLVEFGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYEL 60

Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           E+  G + +Q++RPTGL+DP +E+R   TQV+D+  EI + A +  R+L+T LTKRMAED
Sbjct: 61  EKSAGDVADQVVRPTGLLDPELEVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAED 120

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTEYL+E +++VRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAIL
Sbjct: 121 LTEYLHEHDVKVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 180

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           DADKEGFLRS+ SLIQTIGRAARN+  K ILYAD IT S++ A+DET RRREKQ  +N++
Sbjct: 181 DADKEGFLRSERSLIQTIGRAARNIEGKAILYADRITNSMKKAMDETNRRREKQEAYNEE 240

Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK-------------KKGKAHL 764
             I+PQ++K  I ++++   L D   +    + +Q+ LSK             ++ +  +
Sbjct: 241 MGISPQALKRNIKDIME---LGDITKSKRQRNTKQVPLSKVAEPSQTYEALSPQQLEKEI 297

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             L   M+  A +L FE AA+ RDEI++L++
Sbjct: 298 SRLEAAMYQHAQDLEFELAAQKRDEIEKLRA 328


>gi|298708856|emb|CBJ30814.1| excinuclease ABC subunit B [Ectocarpus siliculosus]
          Length = 1015

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 213/502 (42%), Positives = 289/502 (57%), Gaps = 63/502 (12%)

Query: 358  EEISEFYPLTGQK--IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
            +++    PL G +  + +V+   IY   H+V  R  +   M  I EE++ R  +L   G+
Sbjct: 505  QDLGHDKPLVGSERALDDVDAHVIYPAKHHVVGRGEMEDVMSKISEEMEERCSQLGLGGK 564

Query: 416  LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFVD 474
            +LEA+RL QR   DL +L   G+C+ +ENYSR+L GR PG+PP TL +Y PE+  LL VD
Sbjct: 565  ILEAERLRQRTENDLLLLGAVGTCKGVENYSRHLAGRAPGDPPETLVDYFPENEWLLIVD 624

Query: 475  ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
            ESHV+ PQ+  M+ GD  RK  L E+GFRLPS +DNRPL+ +E+      TI VSATPG 
Sbjct: 625  ESHVSAPQLGAMWGGDQARKKKLVEHGFRLPSALDNRPLKADEFWSKVDKTIFVSATPGK 684

Query: 535  WELEQCQ--------------GIIVEQ--IIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
            +ELE                 G +V+   +IRPTG+ DPPV+IR +  QV D+  E    
Sbjct: 685  FELELATLGAGKSGGMGWDEIGDLVDAQAVIRPTGITDPPVDIRPSEGQVSDMVQECKTR 744

Query: 579  AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
              +G R+L+T LTK+MAEDL+ +L E+ +   Y+HS VK ++R+E++R LR G+ DV+VG
Sbjct: 745  GGRGERVLVTALTKQMAEDLSAFLMEQGVPTAYLHSGVKPMQRLELLRQLRSGEIDVIVG 804

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +NLLREGL++PE  LV ILDAD EGFLRS T+L+QTIGRA R+   + +LYAD IT S++
Sbjct: 805  VNLLREGLNLPEVSLVCILDADAEGFLRSDTALLQTIGRATRHEAGRAVLYADRITPSMK 864

Query: 699  LAIDETTRRREKQLEHNKKHNINPQ-----SVKEKIMEVI--DPI--------------- 736
             A+ ET RRRE Q  HNK H I P      SV + I++ I  D +               
Sbjct: 865  RALAETDRRREIQTRHNKLHGITPSVAKAASVGDSILDSINGDAVHTQREGEGRDSSSDH 924

Query: 737  ---------------LLEDAATTNISIDAQQLS--LSKKKGKAH-LKSLRKQ----MHLA 774
                           LL D A  N    A Q    L+  +G  H L  L +Q    M LA
Sbjct: 925  VASWANHSLLPDQVQLLYDLAAQNGKGSAHQQKTLLTPSEGTTHALMRLAEQASTKMSLA 984

Query: 775  ADNLNFEEAARIRDEIKRLKSS 796
            A   +F+EAA  RD    L S+
Sbjct: 985  ATKTDFKEAALWRDRRDALLST 1006



 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 123/174 (70%), Gaps = 1/174 (0%)

Query: 128 SWSINNHSKDI-TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
           +W +    + +   F + + + P+GDQP AI  L +GI   ++ Q LLG TG+GKTF +A
Sbjct: 209 AWLVEERERGVGAVFDLNSPFEPAGDQPEAIKALCQGIEEGKRHQTLLGATGTGKTFIIA 268

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            VI+  + P +V+APNK+LA+QL +E +  FP+NAVE+FVSYYDYY PEA+   +DTYI+
Sbjct: 269 NVIQEARLPTLVLAPNKVLASQLTNELRALFPNNAVEFFVSYYDYYLPEAFNSASDTYID 328

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           K   IN+ IDRMRHSAT+SLLER D IVV+SVSCIYG+G    Y +  +++ +G
Sbjct: 329 KVVQINDDIDRMRHSATQSLLERRDVIVVASVSCIYGLGMPSKYLEASIRIVVG 382


>gi|240850158|ref|YP_002971551.1| excinuclease ABC subunit B [Bartonella grahamii as4aup]
 gi|240267281|gb|ACS50869.1| excinuclease ABC subunit B [Bartonella grahamii as4aup]
          Length = 376

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 177/279 (63%), Positives = 223/279 (79%), Gaps = 2/279 (0%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           EW+ +RP TI VSATPG WE+EQ  G   EQIIRPTGL+DPP E+R A  QV+DV +EI 
Sbjct: 4   EWDAMRPQTIAVSATPGRWEIEQSHGTFAEQIIRPTGLIDPPTEVRPASNQVDDVVNEIR 63

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              Q+G R L+TVLTKRMAEDLTEYL+E++IRVRYMHS++ TLERIEI+RDLRLG FDVL
Sbjct: 64  KTIQKGYRTLVTVLTKRMAEDLTEYLHEQDIRVRYMHSDIDTLERIEILRDLRLGTFDVL 123

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +GINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYADTIT S
Sbjct: 124 IGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADTITGS 183

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA-QQLSL 755
           I+ A+ ET RRR+KQ+ +N++H+I P+S+K+ I ++++    E+     I+ D  ++ ++
Sbjct: 184 IERALQETQRRRQKQIAYNEEHHITPKSIKKNIGDILNS-GYENNHIRTITPDVIEKKNM 242

Query: 756 SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 +H+K L K MH AA +LNFEEAAR+RDEIK+L+
Sbjct: 243 VGNNLASHIKHLEKLMHEAAADLNFEEAARLRDEIKQLQ 281


>gi|258545353|ref|ZP_05705587.1| excinuclease ABC subunit B [Cardiobacterium hominis ATCC 15826]
 gi|258519456|gb|EEV88315.1| excinuclease ABC subunit B [Cardiobacterium hominis ATCC 15826]
          Length = 319

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 180/317 (56%), Positives = 227/317 (71%), Gaps = 2/317 (0%)

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
           +GMYRGD  RK TL +YGFRLPS +DNRPLRFEE+  L P TI +SATPG +E E   G 
Sbjct: 1   NGMYRGDRSRKETLVDYGFRLPSALDNRPLRFEEFEALAPQTIYISATPGDYEREHS-GQ 59

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
            VEQ++RPTGL+DP VEIR   +QVED+  EI        R+L+T LTK+MAEDLT+YL 
Sbjct: 60  TVEQVVRPTGLLDPEVEIRPVDSQVEDILGEIRERVAADERVLITTLTKKMAEDLTDYLM 119

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           E ++RVRY+HS+V T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAI DADKEG
Sbjct: 120 EHDVRVRYIHSDVGTVERMEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAIFDADKEG 179

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           FLR + +LIQTIGRAARN   K ILYA  IT+S+Q A+DET RRREKQ ++N+ H I PQ
Sbjct: 180 FLRGERALIQTIGRAARNARGKAILYAAHITRSMQAAMDETARRREKQQQYNEAHGITPQ 239

Query: 724 SVKEKIMEVIDPILLE-DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
           ++++KI +V++   +   A   +   + +++    K     +K L KQM   A NL FE 
Sbjct: 240 TIRKKITDVMEGAHVAIKAKKAHREREREEMPADPKAAAKLIKQLEKQMLEHAKNLEFEA 299

Query: 783 AARIRDEIKRLKSSPYF 799
           AA +RD IK ++ S Y 
Sbjct: 300 AAALRDRIKHIEQSAYI 316


>gi|224369719|ref|YP_002603883.1| UvrB3 [Desulfobacterium autotrophicum HRM2]
 gi|223692436|gb|ACN15719.1| UvrB3 [Desulfobacterium autotrophicum HRM2]
          Length = 330

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 173/321 (53%), Positives = 224/321 (69%)

Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243
           TMA +I  M++P +++APNK LAAQLY+E K  FP N VEYFVSYY YYQPEAY+P +DT
Sbjct: 2   TMANIISQMEKPNLIIAPNKTLAAQLYNELKMLFPDNCVEYFVSYYAYYQPEAYIPSSDT 61

Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303
           YI+K+SSINE ID+MRHSATRS+L R D IVV+SVSCIYG+G+ E Y  + V L     +
Sbjct: 62  YIQKDSSINELIDKMRHSATRSVLARKDVIVVASVSCIYGLGAPEEYLDLRVTLDRDMEI 121

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            ++++    V  QY R D+   RGTFRV GD +EIFP++ E+   R+  FG+ IEEISE 
Sbjct: 122 SREDVNRKFVDIQYTRNDVDFHRGTFRVRGDRLEIFPAYEENKTIRIDFFGDTIEEISEI 181

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
             L G  I+  + + IY  SHYVT + T   A++ I  ELK RL  L     L+EAQRLE
Sbjct: 182 DALQGTVIKQFDQMAIYPASHYVTNKKTQKQAVERIVIELKERLAFLNDHNLLVEAQRLE 241

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
           +   YDLE+LE  G C  IENYSR+LTGR PG+PPPTL +YI +D LLF DE+H+++ Q+
Sbjct: 242 EHTRYDLEILEEIGYCNGIENYSRHLTGRAPGQPPPTLLDYIDQDFLLFFDENHISVSQL 301

Query: 484 SGMYRGDFHRKATLAEYGFRL 504
             +Y+ D  RK TL ++GFRL
Sbjct: 302 GAIYKADRSRKETLVKHGFRL 322


>gi|88194538|ref|YP_499333.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|87202096|gb|ABD29906.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           NCTC 8325]
          Length = 343

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 174/330 (52%), Positives = 237/330 (71%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 7   FKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 67  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 127 SATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I+
Sbjct: 187 DIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 247 PASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            IENYS +LT R  G  P TL +Y  +D L
Sbjct: 307 GIENYSVHLTLRPLGSTPYTLLDYFGDDWL 336


>gi|88194540|ref|YP_499336.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|87202098|gb|ABD29908.1| excinuclease ABC subunit B, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
          Length = 324

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 173/327 (52%), Positives = 235/327 (71%), Gaps = 8/327 (2%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +DESHVT+PQ+ GMY GD  RK  L ++GFRLPS +DNRPL+FEE+       + VSAT
Sbjct: 1   MIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSAT 60

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
           PG +E+E    + VEQIIRPTGL+DP +E+R    Q++D+  EI    ++  R+L+T LT
Sbjct: 61  PGPYEIEHTDKM-VEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLT 119

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           K+M+EDLT Y+ E  I+V Y+HSE+KTLERIEIIRDLR+G +DV+VGINLLREG+DIPE 
Sbjct: 120 KKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEV 179

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
            LV ILDADKEGFLRS  SLIQTIGRAARN   +VI+YAD +T S++ AIDET RRRE Q
Sbjct: 180 SLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQ 239

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL---SLSKKKGKAHLKSLR 768
           ++HN+KH I P+++ +KI ++I   +  D         AQ +    ++KK+ +  + ++ 
Sbjct: 240 MKHNEKHGITPKTINKKIHDLISATVENDENNDK----AQTVIPKKMTKKERQKTIDNIE 295

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKS 795
           K+M  AA +L+FE+A  +RD +  LK+
Sbjct: 296 KEMKQAAKDLDFEKATELRDMLFELKA 322


>gi|3043868|gb|AAC14603.1| extracellular protein Exp5 precursor [Lactococcus lactis subsp.
           cremoris MG1363]
          Length = 455

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 165/273 (60%), Positives = 205/273 (75%), Gaps = 1/273 (0%)

Query: 419 AQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHV 478
           AQRLEQR  YD+EML   G C  +ENYSR++ GR  GEPP TL ++ P+D ++ +DESH+
Sbjct: 176 AQRLEQRTNYDIEMLREMGYCNGVENYSRHMDGREEGEPPYTLLDFFPDDFMIMIDESHM 235

Query: 479 TIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
           T+ Q+ GMY GD  RK  L  YGFRLPS +DNRPL+ EE+       + VSATPG +E+E
Sbjct: 236 TMGQVKGMYNGDRARKEMLCNYGFRLPSALDNRPLKREEFESHVHQIVYVSATPGDYEME 295

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           Q    IVEQIIRPTGL+DP VE+R    Q++D+  EI+  A++  R+ +T LTK+M+EDL
Sbjct: 296 QTD-TIVEQIIRPTGLLDPVVEVRPMMGQIDDLVGEIHKRAEKNERVFVTTLTKKMSEDL 354

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           T Y  E  I+V+YMHS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILD
Sbjct: 355 TAYFKEMGIKVKYMHSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILD 414

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           ADKEGFLR++  LIQTIGRAARN    VILY+D
Sbjct: 415 ADKEGFLRNERGLIQTIGRAARNSEGHVILYSD 447


>gi|218515278|ref|ZP_03512118.1| excinuclease ABC subunit B [Rhizobium etli 8C-3]
          Length = 341

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 171/306 (55%), Positives = 220/306 (71%), Gaps = 26/306 (8%)

Query: 33  KQLEVDKTMVA-DAMRRIRSEAGKHRK---NAAKR----MLIHQREN------------- 71
           KQLE D      ++ R I S+AGKHRK   NAA++    + ++++               
Sbjct: 36  KQLEADAEASGVESQRDIASKAGKHRKAVENAARKHSEAVSVNKKATVGKTARGVSIGGS 95

Query: 72  ----TASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHR 127
               T +       + + +S +   +IS   +T +V+AL++LI+S NPL KNGKIWTPHR
Sbjct: 96  SDPKTRAAAGLNPVAGLDISLEDAGKISPGGVTATVEALSKLIESGNPLHKNGKIWTPHR 155

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
               +     I    M++DY P+GDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMAK
Sbjct: 156 PARPDKSEGGIRIL-MKSDYEPAGDQPTAIRDLVEGLENGDRSQVLLGVTGSGKTFTMAK 214

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           VIEA QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK
Sbjct: 215 VIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEK 274

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           ESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++
Sbjct: 275 ESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQ 334

Query: 308 LLSSLV 313
           LL+ LV
Sbjct: 335 LLADLV 340


>gi|237751911|ref|ZP_04582391.1| exinuclease abc subunit b [Helicobacter winghamensis ATCC BAA-430]
 gi|229376670|gb|EEO26761.1| exinuclease abc subunit b [Helicobacter winghamensis ATCC BAA-430]
          Length = 325

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 177/329 (53%), Positives = 227/329 (68%), Gaps = 8/329 (2%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           +L VDESHV++PQ  GMY GD  RK  L EYGFRLPS +DNRPL++EE+    P  + VS
Sbjct: 1   MLIVDESHVSLPQFGGMYAGDRSRKEVLVEYGFRLPSALDNRPLKYEEFIIKAPHFLFVS 60

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
           ATP   EL+  Q    EQ+IRPTGL+DP  E+     QV  +YD       +G R+L+T 
Sbjct: 61  ATPAQKELDLSQEHTAEQLIRPTGLLDPLYEVLEVDKQVTILYDRAKEVIARGERVLVTA 120

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           LTK+MAE+LT+Y  +  +RVRYMHS++  +ER +IIR LR G+FD+LVGINLLREGLD+P
Sbjct: 121 LTKKMAEELTKYYNDLGLRVRYMHSDIDAIERNQIIRALRAGEFDILVGINLLREGLDLP 180

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           E  LVAILDADKEGFLRS+TSLIQT+GRAARNVN +V+L+A  IT S+Q A++ T  RR 
Sbjct: 181 EVSLVAILDADKEGFLRSETSLIQTMGRAARNVNGRVLLFASKITPSMQKAMEITDYRRA 240

Query: 710 KQLEHNKKHNINPQSVKEKIMEVI---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKS 766
           KQ  +NK HNI PQSV  K+ E +   D  +L + A       A +  + K + +  +K 
Sbjct: 241 KQEAYNKAHNIIPQSVSRKLDEDLKNQDLGMLYERAKK-----ASKEKMPKSEREKLVKE 295

Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           L KQM  AA  L FEEAAR+RDEI +L++
Sbjct: 296 LSKQMQEAAKKLEFEEAARLRDEIAKLRA 324


>gi|237751910|ref|ZP_04582390.1| exinuclease abc subunit b [Helicobacter winghamensis ATCC BAA-430]
 gi|229376669|gb|EEO26760.1| exinuclease abc subunit b [Helicobacter winghamensis ATCC BAA-430]
          Length = 324

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 152/323 (47%), Positives = 222/323 (68%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP AI  L   I    + Q L+GVTGSGKTF+MA +I+ +Q P ++M 
Sbjct: 2   FALHSQFKPSGDQPEAIKTLSSFIKKGSQYQTLIGVTGSGKTFSMAHIIQELQMPTLIMT 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEF+ FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSINE ++R+R 
Sbjct: 62  HNKTLAAQLYSEFQGFFPKNHVEYFISHFDYYQPEAYIPRQDLFIEKDSSINEGLERLRL 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL  +DC+VV+SVS  YG+G+ + Y +MI + ++     QK LL  LV   YKR 
Sbjct: 122 SATTSLLAYDDCVVVASVSANYGLGNPKEYLEMIEKFEVAQDYHQKSLLLRLVDMGYKRN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV G+ I+IFP++ E+   R+  FG+++E I+    +  + ++ +E+  +Y
Sbjct: 182 DNFFDRGDFRVNGEVIDIFPAYSEEEIVRLEFFGDELESITLLDSIEKKPLKKLESFVLY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A + ++     L  A+K I+EEL +RL   +++GR++E +RL+ R  +DLEM++ TG C+
Sbjct: 242 AANPFIVGADRLKQAVKSIEEELHLRLKFFKEQGRMVEYERLKSRTEFDLEMIQATGICK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFE 463
            IENY+R+LTG+ PGE P +L +
Sbjct: 302 GIENYARHLTGKKPGETPYSLLD 324


>gi|289811492|ref|ZP_06542121.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 308

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 163/304 (53%), Positives = 212/304 (69%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIEN 444
            IEN
Sbjct: 305 GIEN 308


>gi|255523395|ref|ZP_05390364.1| helicase domain protein [Clostridium carboxidivorans P7]
 gi|255512853|gb|EET89124.1| helicase domain protein [Clostridium carboxidivorans P7]
          Length = 313

 Score =  317 bits (813), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 163/305 (53%), Positives = 216/305 (70%), Gaps = 6/305 (1%)

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MY GD  RK +L EYGFRLPS  DNRPL F E+       + VSATP ++ELE    +  
Sbjct: 1   MYAGDRSRKESLVEYGFRLPSAFDNRPLTFNEFEGKLNQVLFVSATPANYELEHSTNV-A 59

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           EQIIRPTGL+DP +E++  + Q++D+Y  I    ++G RIL+T LTK+MAEDL++Y  E 
Sbjct: 60  EQIIRPTGLLDPEIEVKPIKGQIDDLYKNIVETIKRGYRILVTTLTKKMAEDLSDYFKEM 119

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +I+  Y+HS + T++R+EIIRDLR G+FDVL+GINLLREGLDIPE  LVAILDADKEGFL
Sbjct: 120 DIKANYLHSGIDTIQRMEIIRDLRKGEFDVLIGINLLREGLDIPEVALVAILDADKEGFL 179

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS+ SLIQTIGRAARN  SKVI+YAD IT S+  AI ET RRR+ Q+E+N+KHNI P+++
Sbjct: 180 RSERSLIQTIGRAARNSESKVIMYADRITDSMGKAISETNRRRKIQMEYNEKHNIVPKTI 239

Query: 726 KEKIMEVIDP--ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
           K++I EVI+   +L E+A   ++    + +  + +     +    K+M  AA  L FE A
Sbjct: 240 KKEIREVIEATKVLEENAQYDSLE---EAMEANNENIDLLISKYEKEMKQAAKELQFELA 296

Query: 784 ARIRD 788
           A +RD
Sbjct: 297 ADLRD 301


>gi|239629187|ref|ZP_04672218.1| UvrABC system protein B [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239528546|gb|EEQ67547.1| UvrABC system protein B [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 320

 Score =  313 bits (803), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 163/319 (51%), Positives = 220/319 (68%), Gaps = 8/319 (2%)

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-Q 541
           + GMY GD  RK  L  YGFRLPS +DNRPL+  E+       + VSATPG +EL++  +
Sbjct: 1   MRGMYNGDRARKQMLVNYGFRLPSALDNRPLKINEFEQHVHRILYVSATPGPYELDRVPK 60

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
             I EQIIRPTGL+DP +E+R    Q++D+  EIN       R+ +T LTK+MAEDLT+Y
Sbjct: 61  DDIAEQIIRPTGLLDPKIEVRPVMGQIDDLVGEINKRVDAHERVFITTLTKKMAEDLTDY 120

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L +  I+VRY+HS++KTLER +IIRDLRLGKFDVL+GINLLREG+D+PE  L+AILDADK
Sbjct: 121 LKDMGIKVRYLHSDIKTLERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADK 180

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN 721
           EGFLR++ SLIQTIGRA+RN + KVI+YAD +T S++ AI+ET RRR  Q + N++H+I 
Sbjct: 181 EGFLRAERSLIQTIGRASRNEHGKVIMYADKVTDSMKAAINETQRRRTIQEKFNEEHHIT 240

Query: 722 PQSVKEKIMEVIDPILLED-----AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
           P+++ + I   I      D     A  T   +D + +S + K  K  + +L  QM  AA 
Sbjct: 241 PKTIIKPIRAAISSYEQSDDDKAEAKKTFAEVDYEDMSKADK--KELVANLHSQMQAAAK 298

Query: 777 NLNFEEAARIRDEIKRLKS 795
            L+FE+AA +RD I  L++
Sbjct: 299 KLDFEQAASLRDTILELQA 317


>gi|12407621|gb|AAG53595.1|AF248315_1 UvrB-like protein [uncultured bacterium pCosAS1]
          Length = 309

 Score =  313 bits (801), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 158/294 (53%), Positives = 205/294 (69%)

Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303
           +I+K++S+NE I++MR SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  +
Sbjct: 6   FIQKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMII 65

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           +Q+ +L  L + QY R D    RGTFRV G+ I+IFP+  +D A RV +F  ++E +S F
Sbjct: 66  DQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDIFPAESDDFALRVELFDEEVERLSLF 125

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
            PLTG     +    +Y  +HYVTPR  +  AM+ IK EL  R   L    +LLE QR+ 
Sbjct: 126 DPLTGHVESIIPRFTVYPKTHYVTPRERIVQAMEDIKVELADRRKTLLDNNKLLEEQRIS 185

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
           QR  +DLEM+   G C  IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI
Sbjct: 186 QRTQFDLEMMNELGYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQI 245

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537
            GMYRGD  RK TL EYGFRLPS +DNRP++FEE+  L P TI VSATPG++EL
Sbjct: 246 GGMYRGDRARKETLVEYGFRLPSALDNRPMKFEEFEALAPXTIYVSATPGNYEL 299


>gi|301307457|ref|ZP_07213449.1| putative excinuclease ABC subunit B [Escherichia coli MS 124-1]
 gi|300837372|gb|EFK65132.1| putative excinuclease ABC subunit B [Escherichia coli MS 124-1]
          Length = 300

 Score =  313 bits (801), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 157/293 (53%), Positives = 209/293 (71%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
             +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM 297


>gi|145629308|ref|ZP_01785107.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21]
 gi|144978811|gb|EDJ88534.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21]
          Length = 275

 Score =  310 bits (793), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 149/269 (55%), Positives = 195/269 (72%)

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR SA
Sbjct: 5   KTLAAQLYAEMKGFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRLSA 64

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           T+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + QY R D 
Sbjct: 65  TKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRNDQ 124

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
              RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V    IY  
Sbjct: 125 AFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIYPK 184

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C  I
Sbjct: 185 THYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCSGI 244

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
           ENYSRYL+GRN GEPPPTLF+Y+P D++ 
Sbjct: 245 ENYSRYLSGRNEGEPPPTLFDYMPSDAIF 273


>gi|291533170|emb|CBL06283.1| Helicase subunit of the DNA excision repair complex [Megamonas
           hypermegale ART12/1]
          Length = 242

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 153/243 (62%), Positives = 191/243 (78%), Gaps = 1/243 (0%)

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MY GD  RK +L + GFRLPS  DNRPLRFEE+       I VSATP  +EL Q   + V
Sbjct: 1   MYAGDRSRKESLVDNGFRLPSAFDNRPLRFEEFLDHINQIIYVSATPAPFELAQANQV-V 59

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           EQIIRPTGL+DP +EIR    Q++D+  EI +  ++  R+L+T LTK+MAE+LT+YL E 
Sbjct: 60  EQIIRPTGLLDPEIEIRPLEGQMDDLLGEIKIRTKKNERVLITTLTKKMAENLTDYLKEM 119

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            I+VRY+HS++ T+ER EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFL
Sbjct: 120 GIKVRYLHSDIATIERAEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 179

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS+TSLIQTIGRAARN + KVI+YAD IT S+Q AIDET RRRE Q ++N++H+I P+++
Sbjct: 180 RSETSLIQTIGRAARNAHGKVIMYADRITDSMQKAIDETLRRREVQDKYNQEHHITPKTI 239

Query: 726 KEK 728
           ++K
Sbjct: 240 QKK 242


>gi|256027141|ref|ZP_05440975.1| excinuclease ABC subunit B [Fusobacterium sp. D11]
          Length = 293

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 142/287 (49%), Positives = 212/287 (73%), Gaps = 2/287 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ ++Y P+GDQP AI  ++K I +  K Q+LLGVTGSGKTFT+A VIE +QRP++++
Sbjct: 5   LFKIHSEYRPTGDQPTAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPSLII 64

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID++R
Sbjct: 65  APNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEIDKLR 124

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           ++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     + +KEL+  LV  +Y R
Sbjct: 125 NAATAALIHRRDVIIVASVSSIYGLGSPDTYRKMTIPIDKQTGISRKELIKRLVDLRYNR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIK 378
            D+   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQK+ +N+E I 
Sbjct: 185 NDVAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLERIV 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           IY  + Y+T     +  +K IK++LK+ + + E E +++ + ++E +
Sbjct: 244 IYPATQYLTADDDKDRIIKEIKDDLKVEVKKFEDEKKIIGSTKIEAK 290


>gi|171850941|emb|CAQ00033.1| putative uvrABC system protein B [Rhodococcus erythropolis]
          Length = 345

 Score =  304 bits (779), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 163/337 (48%), Positives = 221/337 (65%), Gaps = 32/337 (9%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           T +   F LPS  DNRPL +EE++     T+ +SATPG +EL Q  G  VEQ+IRPTGL+
Sbjct: 7   TWSSSDFGLPSATDNRPLTWEEFSQRIGQTVYLSATPGKYELGQSGGEFVEQVIRPTGLI 66

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP V ++  + Q++D+  EI   A++  R+L+T LTK+M+EDLT+YL E  IRVRY+HS+
Sbjct: 67  DPEVIVKPTKGQIDDLVHEIRERAERDERVLVTTLTKKMSEDLTDYLLELGIRVRYLHSD 126

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + TL R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTI
Sbjct: 127 IDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQTI 186

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+ +V +YAD IT S+  AI+ET RRREKQ+ +N+K  ++PQ +++KI +++D 
Sbjct: 187 GRAARNVSGQVHMYADKITASMAQAIEETERRREKQVAYNEKMGVDPQPLRKKIADILDQ 246

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAH-----------------------------LKS 766
           +  E+A  T  S+D      +  +G+                               +K 
Sbjct: 247 V-YEEAEDTAASVDVGGSGRNATRGRRAQGEAGRAVSAGVYEGRDTKSMPRAELADLVKE 305

Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           L  QM  AA +L FE A R+RDEI  LK     +G+D
Sbjct: 306 LTGQMMNAARDLQFELAGRLRDEISDLKKE--LRGMD 340


>gi|221090580|ref|XP_002154320.1| PREDICTED: hypothetical protein, partial [Hydra magnipapillata]
          Length = 228

 Score =  303 bits (776), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 139/219 (63%), Positives = 179/219 (81%), Gaps = 3/219 (1%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
           N+ SK+   F +++ + PSGDQP AI ++++G    EK Q+LLGVTGSGKTFTMA VI+ 
Sbjct: 13  NSPSKE---FALESPFKPSGDQPQAIEEIVRGFQRGEKDQVLLGVTGSGKTFTMANVIQK 69

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +QRP+++MAPNKILAAQLYSE K FFP+N VEYFVSYYDYYQPEAYV R+DT+IEK +SI
Sbjct: 70  LQRPSLIMAPNKILAAQLYSEMKEFFPNNCVEYFVSYYDYYQPEAYVARSDTFIEKTASI 129

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           NEQIDRMRHSATRS+LER+D IVV+SVSCIYGIG V +YS+M + LK+G S++++ L+  
Sbjct: 130 NEQIDRMRHSATRSMLERHDVIVVASVSCIYGIGGVNTYSEMTIALKVGQSIDKQLLMKK 189

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           L++ QYKR DI   RG+FR  GD ++IFPSH E+ +WR+
Sbjct: 190 LIEIQYKRNDIDFSRGSFRSRGDVLDIFPSHFENRSWRL 228


>gi|146318679|ref|YP_001198391.1| helicase subunit of the DNA excision repair complex [Streptococcus
           suis 05ZYH33]
 gi|145689485|gb|ABP89991.1| Helicase subunit of the DNA excision repair complex [Streptococcus
           suis 05ZYH33]
          Length = 271

 Score =  300 bits (767), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 139/260 (53%), Positives = 192/260 (73%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI  L+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYAPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL++LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGQEISRDQLLNALVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ + +V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGDVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIK 400
             +H+VT    + T +  I+
Sbjct: 250 PATHFVTNDDHMETVIAKIR 269


>gi|145641148|ref|ZP_01796729.1| excinuclease ABC subunit B [Haemophilus influenzae R3021]
 gi|145274309|gb|EDK14174.1| excinuclease ABC subunit B [Haemophilus influenzae 22.4-21]
          Length = 276

 Score =  297 bits (761), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 143/261 (54%), Positives = 190/261 (72%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 10  FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 70  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + QY R 
Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V    IY
Sbjct: 190 DQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKE 401
             +HYVTPR  +  A++ IK+
Sbjct: 250 PKTHYVTPRERILDAIENIKK 270


>gi|241563357|ref|XP_002401670.1| hypothetical protein IscW_ISCW020751 [Ixodes scapularis]
 gi|215501862|gb|EEC11356.1| hypothetical protein IscW_ISCW020751 [Ixodes scapularis]
          Length = 227

 Score =  293 bits (751), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 135/224 (60%), Positives = 169/224 (75%)

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ NSH+V P+ T+N+A+  I+EEL+ RL  L+ + + LE QRL QR  YDLEML  TGS
Sbjct: 2   VFGNSHFVMPQETVNSAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGS 61

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ +ENYSR+ TGRN G+PPPTLFEY+PED+LLFVDESHV++PQI  MY GD  RK  L 
Sbjct: 62  CKGVENYSRFFTGRNAGKPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKEVLV 121

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPS +DNRPL+FEEW   RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP 
Sbjct: 122 EHGFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFELEETDGTVVELIIRPTGLLDPE 181

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
             I+ A  QVED+  EI     +G R+L+T LTK+MAEDLT YL
Sbjct: 182 CIIKPATNQVEDLISEIQTTISKGFRVLVTTLTKKMAEDLTAYL 225


>gi|153871608|ref|ZP_02000736.1| excinuclease ABC subunit B [Beggiatoa sp. PS]
 gi|152071925|gb|EDN69263.1| excinuclease ABC subunit B [Beggiatoa sp. PS]
          Length = 298

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 142/249 (57%), Positives = 187/249 (75%), Gaps = 3/249 (1%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           I N SK    FQ+Q  + P GDQP AI QLLKG+   ++ Q+LLGVTGSGKTFT+A VI+
Sbjct: 36  IKNMSKP---FQLQAKFKPKGDQPQAIKQLLKGLKRGDQHQILLGVTGSGKTFTIANVIQ 92

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +++APNK LAAQLYSE + FFP+NAVEYFVSYYDYYQPEAY+P +DTYIEK++S
Sbjct: 93  VVQRPTLILAPNKTLAAQLYSEMRGFFPNNAVEYFVSYYDYYQPEAYMPASDTYIEKDAS 152

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INEQID+MR SAT+++LER+D IVV+SVS IYG+G    Y QM++ L  G+ +EQ+ +L 
Sbjct: 153 INEQIDQMRLSATKAMLERSDAIVVASVSAIYGLGDPNWYLQMVLHLVRGEEIEQRFILR 212

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            L + QY+R    + RGT+RV G+ I+I+P+  E  A RV +F ++IE +S F PLTGQ 
Sbjct: 213 RLTELQYRRNQTVLERGTYRVHGEVIDIYPAESERDAIRVELFDDEIESLSYFDPLTGQV 272

Query: 371 IRNVETIKI 379
           +R V  + I
Sbjct: 273 LRRVPRVTI 281


>gi|255087270|ref|XP_002505558.1| exinuclease ABC subunits B and C-containing protein [Micromonas sp.
           RCC299]
 gi|226520828|gb|ACO66816.1| exinuclease ABC subunits B and C-containing protein [Micromonas sp.
           RCC299]
          Length = 1672

 Score =  280 bits (715), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 154/373 (41%), Positives = 214/373 (57%), Gaps = 27/373 (7%)

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           + ++   H++TP   L  A   I  EL+ R  EL   G  +EA+RLEQR   D+ +L   
Sbjct: 354 VTLWPRQHHITPPERLKLATAAIGRELRERCAELRANGHGMEAERLEQRTNADVALLNEL 413

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS-------------------------LL 471
           G C   E+YSR+L GR  GEPP TL +Y+  ++                         LL
Sbjct: 414 GWCPGAEHYSRHLGGRAEGEPPVTLLDYLNFNTSDPPTRPPGAGAGAGADARARHRGWLL 473

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
             DESHV +PQ+  M+ GD  RK  L   G+RLPS +DNRPL FEE+    P  ++VSAT
Sbjct: 474 VADESHVMLPQLRAMHGGDRSRKLGLVAGGYRLPSALDNRPLTFEEFWERVPQALLVSAT 533

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
           PG+ E E CQ  +V+ ++RP+G+VDPP++I     Q+  +   +   A +G   L+  LT
Sbjct: 534 PGNVENEWCQSRMVDMVVRPSGVVDPPIKIFPRANQLPQLAAAVRERAARGEASLVCALT 593

Query: 592 KRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           K   EDL  YL E    R  ++HSE+   +R E ++ L+ G+ DVLVG  LLREGLD+P+
Sbjct: 594 KADCEDLAGYLNEIGGCRADWLHSELTAPQRAEKLQALQAGEIDVLVGAQLLREGLDVPQ 653

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT-ITKSIQLAIDETTRRRE 709
             LVA+LDA   GF+RS  SL+Q  GRAARN   +  L+AD   T +I  A+ E +RRRE
Sbjct: 654 VSLVAVLDAGVPGFMRSARSLMQMHGRAARNARGECHLFADAPFTDAINDAVAEVSRRRE 713

Query: 710 KQLEHNKKHNINP 722
           KQ + N+++ I P
Sbjct: 714 KQRDFNERNGIVP 726



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 99/155 (63%), Gaps = 10/155 (6%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSRE---KVQLLLGVTGSGKTFTMAKVIEAMQR--PA 196
            ++  + P+GDQP AI++ +K  H R+   +   L G TG+GKTF +A VI+ + R  P 
Sbjct: 71  SLRAPFAPAGDQPTAISECVK--HLRDDNARFACLRGATGTGKTFVVANVIDTIARDKPT 128

Query: 197 IVMAPNKILAAQLYSEFKNFF-PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
           +V+ PNK LAAQ+  E + +    + VE FVS++  Y PE++      Y+EK S+I+  +
Sbjct: 129 LVVVPNKTLAAQVARELRAYLRDTHRVELFVSHFSLYVPESF--SRGRYVEKRSAIDPNL 186

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
           D +RH ATR+L+E ++ +VV+SVSC+YG+G    Y
Sbjct: 187 DALRHRATRALVESDNVVVVASVSCLYGMGMPADY 221


>gi|255023705|ref|ZP_05295691.1| excinuclease ABC subunit B [Listeria monocytogenes FSL J1-208]
          Length = 236

 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/231 (56%), Positives = 171/231 (74%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI QL+ G+    K Q LLG TG+GKTFT++ VI+ + +P +VMA
Sbjct: 5   FELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS   Y +M+V L++G  + + +LL  LV  QY R 
Sbjct: 125 SATAALFERRDVIIIASVSCIYGLGSPIEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           DI   RG FRV GD +EIFP+  ++   R+  FG++IE I E   LTG+ I
Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEII 235


>gi|309800514|ref|ZP_07694666.1| UvrABC system protein B [Streptococcus infantis SK1302]
 gi|308115862|gb|EFO53386.1| UvrABC system protein B [Streptococcus infantis SK1302]
          Length = 257

 Score =  278 bits (710), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 128/222 (57%), Positives = 170/222 (76%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIRE 231


>gi|326560138|gb|EGE10528.1| excinuclease ABC subunit B [Moraxella catarrhalis 46P47B1]
          Length = 244

 Score =  271 bits (692), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 124/204 (60%), Positives = 164/204 (80%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M TD+ PSGDQP AIA+L+KG+ +  + QLLLGVTGSGKT+TMAKVI    RPAI+MA
Sbjct: 41  FEMVTDFEPSGDQPKAIAELVKGVEADMRGQLLLGVTGSGKTYTMAKVIAECGRPAIIMA 100

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR 
Sbjct: 101 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPASDTFIEKDSAINDHIDQMRL 160

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G  ESY +M++ + +GD V +  ++  LV+ QY+R 
Sbjct: 161 SATRALLERRDAIIVASVSAIYGLGDPESYLKMLLHIVVGDRVHRDAVIKRLVELQYERN 220

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLE 344
           ++   RGT+R+ G++++I+P+  E
Sbjct: 221 ELDFGRGTYRIRGETLDIYPAESE 244


>gi|218262778|ref|ZP_03477136.1| hypothetical protein PRABACTJOHN_02815 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223149|gb|EEC95799.1| hypothetical protein PRABACTJOHN_02815 [Parabacteroides johnsonii
           DSM 18315]
          Length = 280

 Score =  266 bits (681), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 139/272 (51%), Positives = 190/272 (69%), Gaps = 8/272 (2%)

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
           TP  +ELE+ +GI+V+Q+IRPTGL+DP +E+R    Q++D+ +EI   +    R+L+T L
Sbjct: 1   TPADYELEKSEGIVVDQVIRPTGLLDPVIEVRPTLNQIDDLMEEITQRSAVDERVLVTTL 60

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKRMAE+LT YL    +R  Y+HS+V TLERI+I+ DLR G FDVL+G+NLLREGLD+PE
Sbjct: 61  TKRMAEELTTYLTRMGVRCNYIHSDVDTLERIQIMDDLRKGLFDVLIGVNLLREGLDLPE 120

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
             LVAILDADKEGFLRS  SL QT GRAARNVN KVI YAD IT S++L +DET RRREK
Sbjct: 121 VSLVAILDADKEGFLRSHRSLTQTAGRAARNVNGKVIFYADKITDSMRLTMDETARRREK 180

Query: 711 QLEHNKKHNINPQSVKEKIMEVI----DPILLEDAATT----NISIDAQQLSLSKKKGKA 762
           QL +N+KH I P+ V +  + ++     P+  E  A      ++  D     +++K+ + 
Sbjct: 181 QLAYNEKHGITPKQVIKNSVSLVAEKQQPVTGEPYAYVEPEPSLVADPVVQYMNRKQLEK 240

Query: 763 HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            ++  +KQM  AA  L+F EAA+ RDE+ +L+
Sbjct: 241 AIERTKKQMMEAAKKLDFIEAAQFRDELVKLE 272


>gi|1545864|gb|AAC45869.1| UvrB [Pseudomonas aeruginosa PAO1]
          Length = 238

 Score =  264 bits (675), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 121/201 (60%), Positives = 156/201 (77%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +V+A
Sbjct: 33  FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 92

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++MR 
Sbjct: 93  PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 152

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G   SY +M++ L  GD ++Q+ELL  L   QY R 
Sbjct: 153 SATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQYTRN 212

Query: 321 DIGIIRGTFRVCGDSIEIFPS 341
           D+   R TFRV GD I+IFP+
Sbjct: 213 DMDFARATFRVRGDVIDIFPA 233


>gi|315928533|gb|EFV07834.1| UvrABC system protein B [Campylobacter jejuni subsp. jejuni 305]
          Length = 285

 Score =  263 bits (673), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 132/283 (46%), Positives = 183/283 (64%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+ 
Sbjct: 3   ELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSH 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R S
Sbjct: 63  NKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR D
Sbjct: 123 ATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y 
Sbjct: 183 NFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILYP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
            S +      L  A+K IK EL  RL   E E +L+E QRL+Q
Sbjct: 243 TSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQ 285


>gi|323971943|gb|EGB67164.1| excinuclease ABC [Escherichia coli TA007]
          Length = 292

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 128/234 (54%), Positives = 173/234 (73%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238


>gi|218460114|ref|ZP_03500205.1| excinuclease ABC subunit B [Rhizobium etli Kim 5]
          Length = 385

 Score =  261 bits (668), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 131/205 (63%), Positives = 162/205 (79%), Gaps = 5/205 (2%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAI
Sbjct: 1   DLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAI 60

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
           LDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q A+DET RRREKQ+ +N 
Sbjct: 61  LDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQVTGSMQRAMDETARRREKQMAYNL 120

Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNIS-IDAQQLS----LSKKKGKAHLKSLRKQM 771
           ++ I P+SVK KI +++D +   D    +IS +  +  +    L     +AHL +L K M
Sbjct: 121 ENGITPESVKAKISDILDSVYERDHVRADISGVSGKGFADGGNLVGNNLQAHLNALEKSM 180

Query: 772 HLAADNLNFEEAARIRDEIKRLKSS 796
             AA +L+FE+AAR+RDEIKRLK++
Sbjct: 181 RDAAADLDFEKAARLRDEIKRLKAA 205


>gi|328465632|gb|EGF36854.1| excinuclease ABC subunit B [Lactobacillus rhamnosus MTCC 5462]
          Length = 219

 Score =  257 bits (657), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 122/219 (55%), Positives = 157/219 (71%), Gaps = 1/219 (0%)

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482
           EQR  YD+EM+   G    IENYSR++ GR PGEPP TL ++ P+D  + VDESHVT+PQ
Sbjct: 1   EQRTNYDIEMMREMGFTSGIENYSRHMDGRKPGEPPYTLLDFFPKDFTIMVDESHVTMPQ 60

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-Q 541
           + GMY GD  RK  L  YGFRLPS +DNRPL+ +E+       + VSATPG +EL +  +
Sbjct: 61  VKGMYNGDRARKQMLINYGFRLPSALDNRPLKIDEFEKHVKRILYVSATPGPYELSRVPK 120

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
             I EQIIRPTGL+DP +E+R    Q++D+  EIN       R+ +T LTK+MAEDLT+Y
Sbjct: 121 EDIAEQIIRPTGLLDPKIEVRPVMGQIDDLVGEINKRIDAHERVFITTLTKKMAEDLTDY 180

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           L +  I+VRY+HS++KTLER +IIRDLRLGKFDVL+GIN
Sbjct: 181 LKDMGIKVRYLHSDIKTLERTQIIRDLRLGKFDVLIGIN 219


>gi|330880882|gb|EGH15031.1| excinuclease ABC subunit B [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 200

 Score =  256 bits (655), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 154/197 (78%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +V+A
Sbjct: 4   FQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQVKRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY R 
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQYTRN 183

Query: 321 DIGIIRGTFRVCGDSIE 337
           D+   R TFRV GD I+
Sbjct: 184 DMDFARATFRVRGDVID 200


>gi|224369720|ref|YP_002603884.1| UvrB4 [Desulfobacterium autotrophicum HRM2]
 gi|223692437|gb|ACN15720.1| UvrB4 [Desulfobacterium autotrophicum HRM2]
          Length = 239

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/222 (57%), Positives = 168/222 (75%), Gaps = 1/222 (0%)

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           MDN+PL+FEE+  L P TI VSATPG +EL++    + +QI+ PTGL+DPPVEIR+AR Q
Sbjct: 1   MDNQPLKFEEFKGLVPRTIFVSATPGDYELKKAGVRVADQIVWPTGLLDPPVEIRNARMQ 60

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           V+D+Y EI    +   R+L+  LTK M+EDLT+Y  +  I+V+Y+HS++ T+ERI+II+D
Sbjct: 61  VDDLYQEILKRVEAQERVLVKTLTKSMSEDLTDYNSDLGIKVKYLHSDIGTVERIDIIQD 120

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LR G FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS  S IQ  G+AARNVN +VI
Sbjct: 121 LRRGLFDVLIGINLLREGLDIPEVTLVAILDADKEGFLRSFRSFIQIFGQAARNVNGRVI 180

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           +YA+  T  ++ A+ E TRRR+ Q  +N+ H I P ++ +KI
Sbjct: 181 MYAEKETGYMKHALTE-TRRRKIQEVYNQTHGITPATINKKI 221


>gi|148645254|gb|ABR01151.1| UvrB [uncultured Geobacter sp.]
          Length = 236

 Score =  250 bits (639), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 122/236 (51%), Positives = 163/236 (69%)

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           TDT+IEK+SS+N++ID+MRHSATRSLL R D I+V+SVSCIYGIGS E+Y+ + +    G
Sbjct: 1   TDTFIEKDSSVNDEIDKMRHSATRSLLTRRDVIIVASVSCIYGIGSPEAYASLHIFFHQG 60

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           +   +  LL  LV+ QY+R D+   RGTFRV GD +E+FP++  D A R+  FG++IE I
Sbjct: 61  EDFGRDTLLKKLVEIQYERNDMDFHRGTFRVRGDVVEVFPAYDSDKALRIEFFGDEIEAI 120

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
           SE  PL G  ++ +    IY  SHYV+ R TL+ A+  I+ +L+ R+     +  L EAQ
Sbjct: 121 SEIDPLRGVVLQRLPKCAIYPASHYVSTRETLDRAVAQIRLDLEERIRYFRSQNMLWEAQ 180

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           R+EQR  +D+EM+E  G CQ IENYSRY   R P EPP TL +Y PED +LFVDES
Sbjct: 181 RIEQRTYFDIEMMEGMGFCQGIENYSRYFDNRQPNEPPYTLIDYFPEDFVLFVDES 236


>gi|148645250|gb|ABR01149.1| UvrB [uncultured Geobacter sp.]
          Length = 236

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 123/236 (52%), Positives = 161/236 (68%)

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           TDT+IEK+SSIN++ID+MRHSATRSLL R D I+V+SVSCIYGIGS E+Y  + +    G
Sbjct: 1   TDTFIEKDSSINDEIDKMRHSATRSLLTRRDVIIVASVSCIYGIGSPEAYQALHIFFHQG 60

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           +   +  LL  LV+ QY+R D    RGTFRV GD +E+FP++  D A RV  FG+++E I
Sbjct: 61  EEFGRDTLLKKLVEIQYERNDTDFHRGTFRVRGDVVEVFPAYDNDKALRVEFFGDEVEAI 120

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
           SE  PL G  ++ +    IY  SHYV+ R TL  A++ I+ +L  R+    +   LLEAQ
Sbjct: 121 SEIDPLRGAVLQRLTKCAIYPASHYVSTRETLEKAVELIRVDLGERIRYFRERNMLLEAQ 180

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           R+EQR  +D+EM+E  G CQ IENYSRY  GR  GEP  TL +Y P+D +LFVDES
Sbjct: 181 RIEQRTFFDIEMMEEMGFCQGIENYSRYFDGRQAGEPGYTLIDYFPDDFVLFVDES 236


>gi|148645252|gb|ABR01150.1| UvrB [uncultured Geobacter sp.]
          Length = 236

 Score =  247 bits (630), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 121/236 (51%), Positives = 160/236 (67%)

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           TDT+IEK+SSIN++ID+MRHSATRSLL R D I+V+SVSCIYGIGS E+Y  + +  + G
Sbjct: 1   TDTFIEKDSSINDEIDKMRHSATRSLLTRRDVIIVASVSCIYGIGSPEAYQALHIFFRQG 60

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           +   +  LL  LV+ QY+R D    RG FRV GD +E+FP++  D A R+  FG+ +E +
Sbjct: 61  EEYGRDTLLKKLVEIQYERNDTDFHRGAFRVRGDVVEVFPAYDNDKALRIEFFGDQVEAV 120

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
           SE  PL G  ++ +    IY  SHYV+ R TL  A++ I+  L  R+    +   LLEAQ
Sbjct: 121 SEIDPLRGTVLQRLAKCAIYPASHYVSTRETLEKAVEQIRVNLGERIRWFRERNMLLEAQ 180

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           R+EQR  +D+EM+E TG CQ IENYSRY  GR  GEP  TL +Y P+D +LFVDES
Sbjct: 181 RIEQRTFFDIEMMEETGFCQGIENYSRYFDGRQAGEPGYTLIDYFPDDFVLFVDES 236


>gi|110003545|emb|CAJ87487.1| excinuclease ABC subunit B [Candidatus Phytoplasma vitis]
          Length = 289

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 133/285 (46%), Positives = 190/285 (66%), Gaps = 10/285 (3%)

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +DNRPL F E+       I +SATPG++E+++ +  I+EQIIRPT ++DP +E+R  + Q
Sbjct: 2   LDNRPLTFSEFEKKMDKVIYLSATPGNYEIDK-KIPIIEQIIRPTFILDPIIELRPTQNQ 60

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +ED+Y EI   A++  R L+T +T  M+E+LT YL +  I+V Y+HSE+K+LER+ I++ 
Sbjct: 61  IEDLYLEIKSRAEKNERTLVTTITINMSEELTNYLKKIGIKVAYLHSEIKSLERMIILKK 120

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LR G +D LVG+NLLREGLD+PE  LVAILDADK GFLRS+ SLIQTIGRAARN+  KVI
Sbjct: 121 LRTGVYDCLVGVNLLREGLDLPEVSLVAILDADKPGFLRSEKSLIQTIGRAARNICGKVI 180

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           +Y D IT +++ AI ET RRR+ Q  +N KHN+ P  + + I +  D          + +
Sbjct: 181 MYGDEITNAMETAIQETLRRRQIQENYNLKHNLKPTIIHKNIKQTTD-------INKDKN 233

Query: 748 IDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEI 790
            D +    S+K+   +  LK L+  M  A+  L+FE+A   R+ I
Sbjct: 234 EDIESFLFSEKQSPKNYSLKKLQSLMKKASKKLDFEKAMFYRNLI 278


>gi|498140|gb|AAA27703.1| ABC excision endonuclease subunit [Zymomonas mobilis]
 gi|1583684|prf||2121335A uvrB gene
          Length = 284

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 128/224 (57%), Positives = 162/224 (72%), Gaps = 10/224 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E    A  G R L+T LTKRMAEDLTEY+YE  ++VRYMHS+V+T+ERIE+IRDLRLG +
Sbjct: 12  EAKKTAAAGWRSLVTTLTKRMAEDLTEYMYEAGLKVRYMHSDVETIERIELIRDLRLGVY 71

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           DVL+GINLLREGLDIPECGLVA+LDADKEGFLRS+TSLIQTIGRAARN   +VILY D I
Sbjct: 72  DVLIGINLLREGLDIPECGLVAVLDADKEGFLRSETSLIQTIGRAARNAEGRVILYGDKI 131

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL---EDAATTNISIDA 750
           T S+  A+ ET RRR KQ+  NK HNI P +VK ++ +++    +    +AA T  + D 
Sbjct: 132 TGSMARAMAETERRRIKQIAWNKAHNITPATVKRQVDDIVGHFGVVNSSEAAATIENHDP 191

Query: 751 QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + L+ S       +    K+M  AA NL FE+AA++RD + +LK
Sbjct: 192 KVLARS-------ISETEKEMLEAAANLEFEKAAQLRDVLHQLK 228


>gi|213423574|ref|ZP_03356554.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 247

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 132/244 (54%), Positives = 168/244 (68%), Gaps = 22/244 (9%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+ER+EII
Sbjct: 4   TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 63

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAARNVN K
Sbjct: 64  RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 123

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN 745
            ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++       A   N
Sbjct: 124 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL-------ALGQN 176

Query: 746 ISIDAQ---------------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           I+                   +L ++ K  +  +  L +QM   A NL FEEAA+IRD++
Sbjct: 177 IAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEEQMMQHAQNLEFEEAAQIRDQL 236

Query: 791 KRLK 794
            +L+
Sbjct: 237 HQLR 240


>gi|142781|gb|AAA22360.1| putative cytoplasmic protein; putative [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 186

 Score =  241 bits (614), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 109/182 (59%), Positives = 143/182 (78%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L+KGI   +K Q LLG TG+GKTFT++ +I+ + +P +V+A
Sbjct: 5   FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS E Y +M+V L+    +E+ ELL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLVAIQYARN 184

Query: 321 DI 322
           DI
Sbjct: 185 DI 186


>gi|145641146|ref|ZP_01796727.1| excinuclease ABC subunit B [Haemophilus influenzae R3021]
 gi|145274307|gb|EDK14172.1| excinuclease ABC subunit B [Haemophilus influenzae 22.4-21]
          Length = 224

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/225 (55%), Positives = 165/225 (73%), Gaps = 15/225 (6%)

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +T LTK+MAEDLT+YL E  IRVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGL
Sbjct: 1   MTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGL 60

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           DIPE  LVAILDADKEGFLRS+ SLIQTIGRAARN+N K ILYAD+ITKS++ AI ET R
Sbjct: 61  DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYADSITKSMEKAITETNR 120

Query: 707 RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS---------- 756
           RREKQ+++N++H I PQ++ +K+ E++D   +   A      + Q+  ++          
Sbjct: 121 RREKQIKYNEEHGIVPQALNKKVGELLD---IGQGANQKAKANKQRGKMAAEPTALYNAP 177

Query: 757 --KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
              K+ +  +K L +QM+  A +L FE+AA IRD++ +L+    F
Sbjct: 178 KNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRDQLHQLREQFVF 222


>gi|315283616|ref|ZP_07871758.1| UvrABC system protein B [Listeria marthii FSL S4-120]
 gi|313612740|gb|EFR86740.1| UvrABC system protein B [Listeria marthii FSL S4-120]
          Length = 228

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 122/229 (53%), Positives = 170/229 (74%), Gaps = 4/229 (1%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           ++D+ DEIN   ++  R+L+T LTK+M+EDLT YL E  ++V+Y+HSEVKTLERIEIIRD
Sbjct: 1   IDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLERIEIIRD 60

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LRLG +DV+VGINLLREG+D+PE  LVAILDADKEGFLRS+ SLIQT+GRAARN N +VI
Sbjct: 61  LRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAARNENGRVI 120

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           +YAD +T S++ +I ET RRR+ Q+E+N+KH I P+++K++I  +I       AA    +
Sbjct: 121 MYADKMTDSMRNSIGETERRRKIQIEYNEKHGITPKTIKKEIRGIIAAT---SAADEREA 177

Query: 748 IDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +    LS +SKK+    ++ +  +M  AA  L+FE AA +RD +  +K+
Sbjct: 178 VKQHDLSKMSKKERDVFIEGMEHEMKEAAKALDFERAAELRDALLEIKA 226


>gi|309800512|ref|ZP_07694664.1| UvrABC system protein B [Streptococcus infantis SK1302]
 gi|308115860|gb|EFO53384.1| UvrABC system protein B [Streptococcus infantis SK1302]
          Length = 226

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 124/225 (55%), Positives = 166/225 (73%), Gaps = 9/225 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLER EIIRDLRLG F
Sbjct: 6   EINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLERTEIIRDLRLGVF 65

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           DVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAARN    VI+YADT+
Sbjct: 66  DVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADTM 125

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PILLEDAATTNISIDA 750
           T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I     +  E+    +I+   
Sbjct: 126 TQSMQKAIDETARRRQIQMAYNEEHGIVPQTIKKEIRDLISVTKTVAKEEDKEVDIN--- 182

Query: 751 QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 183 ---SLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 224


>gi|77410047|ref|ZP_00786599.1| excinuclease ABC, chain B [Streptococcus agalactiae COH1]
 gi|77171344|gb|EAO74661.1| excinuclease ABC, chain B [Streptococcus agalactiae COH1]
          Length = 190

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 107/178 (60%), Positives = 138/178 (77%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           KD   F++ + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI  + +P
Sbjct: 5   KDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL++LV
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNNLV 182


>gi|156301952|ref|XP_001617427.1| hypothetical protein NEMVEDRAFT_v1g226090 [Nematostella vectensis]
 gi|156193726|gb|EDO25327.1| predicted protein [Nematostella vectensis]
          Length = 221

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 113/218 (51%), Positives = 152/218 (69%)

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
           +VT    L  A+  I++++  ++   ++ G+ LEA+RLE+R  +DLEM+   G C  IEN
Sbjct: 2   FVTSPDVLQKAIWEIQQDMVKQVDYFKEIGKHLEAKRLEERTNFDLEMIRELGYCSGIEN 61

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
           YSRYL GR  G  P  L +Y P+D L+ VDESHVTI Q+  MY GD  RK  L EYGFRL
Sbjct: 62  YSRYLDGREAGTRPFCLLDYFPDDFLMVVDESHVTISQVHAMYGGDRSRKENLVEYGFRL 121

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           P+ MDNRPL+FEE+  L+   + VSATP  +ELE+ +GI VEQIIRPTGL+DP +EIR +
Sbjct: 122 PAAMDNRPLKFEEFEALQNQVVYVSATPADYELEKSEGIYVEQIIRPTGLLDPIIEIRPS 181

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
             Q++D+ +EI L  +   R+L+T LTKRMAE+LT+YL
Sbjct: 182 ENQIDDLIEEIQLRCEADERVLITTLTKRMAEELTKYL 219


>gi|308445934|ref|XP_003087055.1| hypothetical protein CRE_21113 [Caenorhabditis remanei]
 gi|308264371|gb|EFP08324.1| hypothetical protein CRE_21113 [Caenorhabditis remanei]
          Length = 214

 Score =  231 bits (589), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 110/199 (55%), Positives = 143/199 (71%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AIA+L+ GI +    Q L G+TGSGKTFTMA VI  ++RP I++A
Sbjct: 6   FILHSNYIPAGDQPEAIARLISGIDNGATHQTLKGITGSGKTFTMANVIHRLKRPTIILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK L AQLY E K FFP NAVEYFVSYYDY+QPE Y+P +D +I+K+S+IN+ ++R+R 
Sbjct: 66  PNKTLTAQLYDEMKRFFPENAVEYFVSYYDYFQPEVYIPGSDRFIQKDSAINDHLERLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+SL+ER D IVV+SVS IYG+G   SY  + + L  G   EQKEL+  L   QY+R 
Sbjct: 126 STTKSLIERRDVIVVASVSSIYGLGDPSSYKALQIPLAPGAQFEQKELIHRLALLQYERS 185

Query: 321 DIGIIRGTFRVCGDSIEIF 339
           +  I R  FRV GD I+IF
Sbjct: 186 EKTIKRAMFRVRGDIIDIF 204


>gi|298364138|gb|ADI79212.1| UvrABC system protein B [Halococcus hamelinensis]
          Length = 234

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 110/235 (46%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           QPEAYV  +DTYI+K++SIN++IDR+RHSATRSLL R+D IVV+SVS IYG+G   +Y  
Sbjct: 1   QPEAYVEASDTYIDKDASINDEIDRLRHSATRSLLTRDDVIVVASVSAIYGLGDPRNYID 60

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
           M ++L +GD++++ +LL  LV   Y+R D+   +GTFRV GD++EIFP +    A RV  
Sbjct: 61  MSLELDVGDTIDRDDLLKRLVDLNYERNDVDFTQGTFRVRGDTVEIFPMYGR-FAVRVEF 119

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           +G++I+ +S+  PL G+   +   + I+   HY  P  TL+TA+  I+  ++ R+   E+
Sbjct: 120 WGDEIDRLSKLDPLEGEVKSDEPAVLIHPAEHYSIPENTLDTAINEIEGLMEERVSYFER 179

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
              L+ AQR+E+R T+DLEML  TG C  IENYS +L+ R PG+ P TL +Y P+
Sbjct: 180 NNDLVAAQRIEERTTFDLEMLRETGYCSGIENYSVHLSDREPGDAPATLLDYFPD 234


>gi|330980693|gb|EGH78796.1| excinuclease ABC subunit B [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 169

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/166 (62%), Positives = 137/166 (82%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +V+A
Sbjct: 4   FQLVTRFEPAGDQPEAIRQLVEGIDAGLAPQTLLGVTGSGKTFSIANVISQIKRPTLVLA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQR 169


>gi|145629306|ref|ZP_01785105.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21]
 gi|144978809|gb|EDJ88532.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21]
          Length = 217

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 120/218 (55%), Positives = 158/218 (72%), Gaps = 15/218 (6%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAEDLT+YL E  IRVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  L
Sbjct: 1   MAEDLTDYLDEHGIRVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSL 60

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           VAILDADKEGFLRS+ SLIQTIGRAARN+N K ILYAD+ITKS++ AI ET RRREKQ +
Sbjct: 61  VAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYADSITKSMEKAITETNRRREKQTK 120

Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS------------KKKGK 761
           +N++H I PQ++ +K+ E++D   +   A      + Q+  ++             K+ +
Sbjct: 121 YNEEHGIVPQALNKKVGELLD---IGQGANQKAKANKQRGKMAAEPTALYNAPKNAKEYQ 177

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
             +K L +QM+  A +L FE+AA IRD++ +L+    F
Sbjct: 178 QQIKKLEQQMYKFAQDLEFEKAAAIRDQLHQLREQFVF 215


>gi|261885396|ref|ZP_06009435.1| excinuclease ABC subunit B [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 234

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 118/230 (51%), Positives = 161/230 (70%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PS DQ  A+  ++  I S  K  +LLGVTGSGKTFTMA VI+ +  P ++M 
Sbjct: 4   FEISSKFKPSDDQEKAVTNIVDSIRSGNKFNVLLGVTGSGKTFTMANVIKRLNMPTLIMT 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SSINE+++R+R 
Sbjct: 64  HNKSLAAQLYSEFKGFFPKNHVEYFISYYDYYQPEAYIPRQDLFIEKDSSINEELERLRL 123

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLE +D +VV+SVS  YG+G+   Y  M++ L +G S+ QKELL  LV   YKR 
Sbjct: 124 SATANLLEFDDVVVVASVSANYGLGNPAEYKGMVLLLSLGMSLNQKELLLKLVDMGYKRN 183

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
           D    RG FRV GD ++I+P++  D A R+  FG++++ +  F  L  ++
Sbjct: 184 DAYFDRGDFRVNGDVVDIYPAYFNDEAIRLEFFGDELDAMYHFDVLENKR 233


>gi|227326992|ref|ZP_03831016.1| excinuclease ABC subunit B [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 223

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 120/217 (55%), Positives = 155/217 (71%), Gaps = 5/217 (2%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLR
Sbjct: 1   RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLR 60

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
           EGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAARN++ K ILY D IT S+  AI E
Sbjct: 61  EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLSGKAILYGDRITASMAKAIGE 120

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS-----LSKK 758
           T RRREKQ  +N +H I PQ + +KI +++      +      +  A + +     ++ K
Sbjct: 121 TERRREKQEAYNTEHGIVPQGINKKISDILQLGRPTNKGKGRGNRKAAEPTARYELMTPK 180

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             +  ++ L  +M   A NL FEEAA +RDE++ L++
Sbjct: 181 ALELKIRELESKMLTHAQNLEFEEAAALRDEVQALRA 217


>gi|303288766|ref|XP_003063671.1| exinuclease ABC subunits B and C-containing protein [Micromonas
           pusilla CCMP1545]
 gi|226454739|gb|EEH52044.1| exinuclease ABC subunits B and C-containing protein [Micromonas
           pusilla CCMP1545]
          Length = 1800

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 161/480 (33%), Positives = 238/480 (49%), Gaps = 90/480 (18%)

Query: 147 YHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFTMAKVIEAMQRP--AIVMAPNK 203
           + P+GDQPAAIA   + +H  R +   L G TG+GKTF +A VI +  +P   +V+ PNK
Sbjct: 118 FAPAGDQPAAIADCARLVHDERRRFTCLRGATGTGKTFVVANVIASQPKPIPTLVVVPNK 177

Query: 204 ILAAQLYSEFKNFFPHN-AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
            LAAQ+  E + +   +  VE FVS++  Y PE+Y      Y+EK S++++ ++ +RH A
Sbjct: 178 TLAAQVARELRAYLRDSRHVELFVSHFSLYVPESY--SRGRYVEKRSAVDKDLEALRHRA 235

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG---------DSVEQKELLSSLV 313
           T++LLE +D +VV+SVSC+YG+G    Y    +  + G         D+V ++ L  SL+
Sbjct: 236 TKALLESDDVVVVASVSCLYGMGMPSDYVDARLCFERGVPGLGVAGQDAVARR-LTESLL 294

Query: 314 KQQYK--RQDIGIIRGTFRVCGDS---------IEIFPSHLE-----DVAWRVSMFG--- 354
            ++ K  R D G+ RG +   G++         I ++P + E     DVA   S+ G   
Sbjct: 295 YEETKDARWD-GVSRGQWAWQGEADADVDGARRIAVWPPYEEAPVEMDVAPDGSLVGFGR 353

Query: 355 -------------NDIEE---ISEFYPLTGQKIRNV-------------------ETIKI 379
                         D+E    ++          R                     + + I
Sbjct: 354 MRSAYDADASYVEADVEADVAVAGKKKKKKTATRGTRRGDFVSAAADGEPLPPPPDRVTI 413

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +   H++TP   L  A + IK E++ R  EL   G  +EA RLEQR   D+ +L   G C
Sbjct: 414 WPRQHHITPPERLAVAAEAIKAEMRARSAELRANGLQIEADRLEQRTKADVGLLRELGWC 473

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI-------------------PEDSLLFVDESHVTI 480
              E+YSR+L GR+ G PP TL +Y                      D LL  DESHV +
Sbjct: 474 PGAEHYSRHLGGRDEGAPPVTLLDYFNFSTTAEAGGAFGGGDSKPKRDWLLVADESHVML 533

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           PQ+  M+ GD  RK  L   G+RLPS +DNRPL F+E+    P  ++VSATPG+ E   C
Sbjct: 534 PQLKAMHGGDRSRKLGLVAGGYRLPSALDNRPLTFDEFWERVPRALLVSATPGAIEEAWC 593



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/184 (42%), Positives = 112/184 (60%), Gaps = 2/184 (1%)

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL- 602
           +V+ ++RP+G++DPPV +     Q+ ++   +   A +G   L+  LTK   EDL  YL 
Sbjct: 656 MVDMVVRPSGVLDPPVTVLPRAKQLPEIARLVRERAARGEASLVCALTKADCEDLAGYLN 715

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
                R  ++HSE+   +R + ++ L+ G+ DVLVG  LLREGLD+P+  LVA+LDA   
Sbjct: 716 CLGGARADWLHSELTAPQRAKKLQRLQQGEIDVLVGAQLLREGLDLPQVSLVAVLDAGVP 775

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYAD-TITKSIQLAIDETTRRREKQLEHNKKHNIN 721
           GF+RS  SLIQ  GRAARN   +   +AD   T+++  AIDE  RRR KQ  HN KH I 
Sbjct: 776 GFMRSSRSLIQMHGRAARNARGECYFFADEPYTEAMTEAIDEIDRRRAKQSAHNAKHGIT 835

Query: 722 PQSV 725
           P++ 
Sbjct: 836 PKNA 839


>gi|254226405|ref|ZP_04919993.1| UvrABC system protein B [Vibrio cholerae V51]
 gi|125621094|gb|EAZ49440.1| UvrABC system protein B [Vibrio cholerae V51]
          Length = 218

 Score =  223 bits (569), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 118/214 (55%), Positives = 155/214 (72%), Gaps = 16/214 (7%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAEDLTEYL+E  ++VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  L
Sbjct: 1   MAEDLTEYLHEHGVKVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVAL 60

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           VAILDADKEGFLRS+ SLIQT+GRAARNVN K ILYAD+ITKS++ AIDET RRREKQL 
Sbjct: 61  VAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITKSMRKAIDETERRREKQLA 120

Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK-------------KKG 760
           +N++  I PQ +K  + ++++   L D A +    +++ + L+K             ++ 
Sbjct: 121 YNEQRGITPQPLKRSVKDIME---LGDIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQL 177

Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +  +  L   M+  A NL FE AA+ RDEI +L+
Sbjct: 178 EKEISKLEAAMYQHAQNLEFELAAQKRDEIHQLR 211


>gi|289606530|emb|CBI61152.1| unnamed protein product [Sordaria macrospora]
          Length = 165

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/166 (63%), Positives = 130/166 (78%), Gaps = 1/166 (0%)

Query: 106 LARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH 165
           +A +I++D    + G+ + PHR    +       F  ++++Y P+GDQP AIA+L+    
Sbjct: 1   MAIMIRTDLSEPETGQTFIPHRPARPDKVDAGKRFV-IKSEYQPAGDQPTAIAELVAAAK 59

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           + EK Q+LLGVTGSGKTFTMAK IE +QRPA+++APNKILAAQLY E K+FFP NAVEYF
Sbjct: 60  AGEKDQVLLGVTGSGKTFTMAKTIEELQRPALILAPNKILAAQLYGEMKSFFPDNAVEYF 119

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           VSYYDYYQPEAYVPR+DTYIEKESS NE IDRMRHSATRSLLER+D
Sbjct: 120 VSYYDYYQPEAYVPRSDTYIEKESSTNEAIDRMRHSATRSLLERDD 165


>gi|153865626|ref|ZP_01997878.1| Excinuclease ABC, B subunit [Beggiatoa sp. SS]
 gi|152145173|gb|EDN72121.1| Excinuclease ABC, B subunit [Beggiatoa sp. SS]
          Length = 214

 Score =  220 bits (560), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 106/199 (53%), Positives = 142/199 (71%)

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           +YSE   FFPHNAVEYFVSYYDYYQPEAY+P +DTYIEK++SINE ID+MR SAT+++LE
Sbjct: 1   MYSERGGFFPHNAVEYFVSYYDYYQPEAYMPASDTYIEKDASINEHIDQMRLSATKAMLE 60

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           R D I+V+SVS IYG+G  E Y QM++    G+ +E + +L  L + QY R D  ++RGT
Sbjct: 61  RADAIIVASVSAIYGLGDPEWYKQMVLHFVCGEEMEHRFILRRLAELQYTRNDTVLVRGT 120

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           +RV G+ I+I+P+  E  A RV +F ++IE +S F PLTGQ +R    + +Y  +HYVTP
Sbjct: 121 YRVRGEVIDIYPAESERDAIRVELFDDEIESLSYFDPLTGQILRRARRLTLYPKNHYVTP 180

Query: 389 RPTLNTAMKYIKEELKMRL 407
           R  L  A+  IK+E   RL
Sbjct: 181 REVLLQAIDKIKKERLDRL 199


>gi|309807260|ref|ZP_07701231.1| helicase C-terminal domain protein [Lactobacillus iners LactinV
           03V1-b]
 gi|308166351|gb|EFO68559.1| helicase C-terminal domain protein [Lactobacillus iners LactinV
           03V1-b]
          Length = 211

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 119/211 (56%), Positives = 155/211 (73%), Gaps = 4/211 (1%)

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +T LTK+M+EDLT+YL E  I+V+Y+HSE+KTLER++IIRDLRLGKFDVLVGINLLREG+
Sbjct: 1   MTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLERMKIIRDLRLGKFDVLVGINLLREGI 60

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           D+PE  LVAILDADKEGFLRS   L+Q +GRAARN N KVI+YAD IT S+Q AID T R
Sbjct: 61  DVPEVSLVAILDADKEGFLRSTRPLVQMMGRAARNENGKVIMYADHITDSMQAAIDVTER 120

Query: 707 RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS---LSKKKGKAH 763
           RR  Q+  N+KH+I P+++ + I ++I      D    +I+ D   L+   LS K+ +  
Sbjct: 121 RRNIQMLFNQKHHIIPKTIVKPIRDIISHTKDVDQKDKHIN-DFSDLNFDELSAKQKEQM 179

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + +L +QM +AA  L+FE AA +RD I  LK
Sbjct: 180 IINLTEQMKIAAQKLDFETAATLRDAIIDLK 210


>gi|167957456|ref|ZP_02544530.1| excinuclease ABC subunit B [candidate division TM7 single-cell
           isolate TM7c]
          Length = 215

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 114/212 (53%), Positives = 157/212 (74%), Gaps = 3/212 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+T LTKRMAEDL+ YL E  I+  Y+HSE+ TLER +I+RDLR G +DVLVGINLLR
Sbjct: 5   RVLVTTLTKRMAEDLSTYLQELGIKTAYIHSEIDTLERGDILRDLRSGVYDVLVGINLLR 64

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
           EGLD+PE  LVAI+DADKEGFLRS+++LIQTIGRAAR+V  KV++Y D IT+S++LAIDE
Sbjct: 65  EGLDLPEVSLVAIMDADKEGFLRSESALIQTIGRAARHVEGKVLMYGDVITRSMRLAIDE 124

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
           T  RR+ Q ++N ++NI P+ V + I E +  I+ +        ID ++  + K++  A 
Sbjct: 125 TNSRRKLQQQYNLENNITPRGVDKAIDEGLRAIIPQ-KDNEKPKIDLKK--IPKEEYGAL 181

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +K L  QM+LA+ NL FE+AA +RD I  +++
Sbjct: 182 VKDLTNQMNLASANLEFEKAAELRDLIAEIRN 213


>gi|300813350|ref|ZP_07093701.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300512493|gb|EFK39642.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 208

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/197 (56%), Positives = 149/197 (75%), Gaps = 5/197 (2%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAEDLT++  E  I+  YMHS+V+TLER++II+DLR  K DVLVGINLLREGLD+PE  L
Sbjct: 1   MAEDLTKHFKEIGIKATYMHSDVETLERMQIIKDLRQAKIDVLVGINLLREGLDMPEVSL 60

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           VAILDADKEGFLRS+TSLIQT GRAARNV+ KVI+YAD IT+S++  IDET RRR+ Q  
Sbjct: 61  VAILDADKEGFLRSRTSLIQTAGRAARNVSGKVIMYADNITESMKETIDETNRRRKIQDA 120

Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL--SLSKKKGKAHLKSLRKQM 771
           +NK+H I P+S+ + I +V++  L   AA +++S   +      +K + +A + +L+ QM
Sbjct: 121 YNKEHGIVPKSIIKDIRDVLNTTL---AAESDVSFKEEDFEDEFTKDEIQAMIDALKPQM 177

Query: 772 HLAADNLNFEEAARIRD 788
           + AA+ L+FE+AA IRD
Sbjct: 178 YEAAEALDFEKAAEIRD 194


>gi|254672085|emb|CBA04747.1| excinuclease ABC subunit B [Neisseria meningitidis alpha275]
          Length = 198

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 111/203 (54%), Positives = 141/203 (69%), Gaps = 20/203 (9%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           +RY+HS++ T+ER+EIIRDLR+G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS 
Sbjct: 1   MRYLHSDIDTVERVEIIRDLRIGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSH 60

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K++
Sbjct: 61  RSLIQTIGRAARNVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQ 120

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKKK----GKAH--------LKSLRKQMHLAAD 776
           + ++ID +  E+        D+ +  L  K     G+ H        +  L K M  AA 
Sbjct: 121 VKDIIDGVYHEE--------DSGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAAR 172

Query: 777 NLNFEEAARIRDEIKRLKSSPYF 799
           +L FEEAA +RD I+ +K +  F
Sbjct: 173 DLQFEEAAVLRDRIRNIKENLLF 195


>gi|145641147|ref|ZP_01796728.1| excinuclease ABC subunit B [Haemophilus influenzae R3021]
 gi|145274308|gb|EDK14173.1| excinuclease ABC subunit B [Haemophilus influenzae 22.4-21]
          Length = 150

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 90/138 (65%), Positives = 109/138 (78%)

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK T
Sbjct: 5   GYCSGIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKET 64

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+D
Sbjct: 65  LVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLD 124

Query: 557 PPVEIRSARTQVEDVYDE 574
           P +EIR    QV+D+  E
Sbjct: 125 PLIEIRPVSIQVDDLLSE 142


>gi|309800513|ref|ZP_07694665.1| UvrABC system protein B [Streptococcus infantis SK1302]
 gi|308115861|gb|EFO53385.1| UvrABC system protein B [Streptococcus infantis SK1302]
          Length = 181

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 96/181 (53%), Positives = 127/181 (70%), Gaps = 1/181 (0%)

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G    +ENYSR++ G
Sbjct: 1   MEVAIAKIEAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTNGVENYSRHMDG 60

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
           R+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  YGFRLPS +DNR
Sbjct: 61  RSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNR 120

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           PLR EE+       + VSATPG +E+EQ   +I EQIIRPTGL+DP VE+R    Q++D+
Sbjct: 121 PLRREEFESHVHQIVYVSATPGDYEMEQTDTVI-EQIIRPTGLLDPEVEVRPTMGQIDDL 179

Query: 572 Y 572
           +
Sbjct: 180 F 180


>gi|118566776|gb|ABL01707.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 145

 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 97/145 (66%), Positives = 119/145 (82%)

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
           PG++ELE+    +V+Q++RPTGL+DP +E+R   TQV+D+  EI   A    R+L+T LT
Sbjct: 1   PGNYELEKSGDEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 60

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           KRMAEDLTEYL E   RVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE 
Sbjct: 61  KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 120

Query: 652 GLVAILDADKEGFLRSKTSLIQTIG 676
            LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 121 SLVAILDADKEGFLRSERSLIQTIG 145


>gi|260221136|emb|CBA29400.1| hypothetical protein Csp_A11950 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 199

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 91/137 (66%), Positives = 110/137 (80%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQP AI+QL+ G+   E  Q LLGVTGSGKTFTMA VI  + RPAIV A
Sbjct: 47  FELYQPYPPAGDQPEAISQLVSGVEDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIVFA 106

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR 
Sbjct: 107 PNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRL 166

Query: 261 SATRSLLERNDCIVVSS 277
           S T+SLLER D ++V++
Sbjct: 167 SCTKSLLERRDVVIVAT 183


>gi|118566923|gb|ABL01773.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 145

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 97/145 (66%), Positives = 119/145 (82%)

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
           PG++ELE+    +V+Q++RPTGL+DP +E+R   TQV+D+  EI   A    R+L+T LT
Sbjct: 1   PGNYELEKSGDEVVDQVVRPTGLLDPIIEVRLVATQVDDLLSEIRQRAAINERVLVTTLT 60

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           KRMAEDLTEYL E   RVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE 
Sbjct: 61  KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 120

Query: 652 GLVAILDADKEGFLRSKTSLIQTIG 676
            LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 121 SLVAILDADKEGFLRSERSLIQTIG 145


>gi|15667436|dbj|BAB68219.1| putative excinuclease ABC B subunits [Enterococcus faecium]
          Length = 194

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/194 (48%), Positives = 134/194 (69%)

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           YVP +DTYIEK+SS+N++ID++RHSAT SLLERND IV++SVSCI+G+GS   Y + +V 
Sbjct: 1   YVPSSDTYIEKDSSVNDEIDKLRHSATSSLLERNDVIVIASVSCIFGLGSPFEYQKQVVS 60

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           ++ G  +++ +L+  LV  Q++R DI   RG FRV GD +EIFP+  ++ A RV  FG++
Sbjct: 61  IRQGAELDRNQLIRDLVSIQFERNDIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDE 120

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           +E I E   LTG+ +   E + I+  +H+VT    +  A+  IK EL+ RL  L  E +L
Sbjct: 121 VERIREVNALTGEVLGETEHVAIFPATHFVTNDEHMEHAVANIKAELEQRLTVLRNENKL 180

Query: 417 LEAQRLEQRITYDL 430
           LEAQRLEQR  YD+
Sbjct: 181 LEAQRLEQRTNYDI 194


>gi|213584872|ref|ZP_03366698.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 159

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 96/155 (61%), Positives = 123/155 (79%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           SAT++LLER D +VV+SVS IYG+G  + Y +M++
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMML 159


>gi|270643339|ref|ZP_06222142.1| UvrABC system, protein B [Haemophilus influenzae HK1212]
 gi|270317312|gb|EFA28863.1| UvrABC system, protein B [Haemophilus influenzae HK1212]
          Length = 142

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/142 (61%), Positives = 114/142 (80%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           + RPA+++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SI
Sbjct: 1   LNRPAMLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASI 60

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           N+QI++MR SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ 
Sbjct: 61  NDQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAK 120

Query: 312 LVKQQYKRQDIGIIRGTFRVCG 333
           L + QY R D    RGTFRV G
Sbjct: 121 LAELQYTRNDQAFQRGTFRVRG 142


>gi|77407386|ref|ZP_00784276.1| excinuclease ABC, B subunit [Streptococcus agalactiae H36B]
 gi|77174005|gb|EAO76984.1| excinuclease ABC, B subunit [Streptococcus agalactiae H36B]
          Length = 200

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 87/188 (46%), Positives = 134/188 (71%)

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           +DTYIEK+SS+N++ID++RHSAT SLLERND IVV+SVSCIYG+GS + Y+  +V L+ G
Sbjct: 4   SDTYIEKDSSVNDEIDKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPG 63

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
             + + +LL++LV  Q++R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I
Sbjct: 64  QEISRDQLLNNLVDIQFERNDIDFQRGKFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRI 123

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
            E   LTG+ +  VE + I+  +H++T    +  A+  I+ E++ ++   EKEG+L+EAQ
Sbjct: 124 REIESLTGRVLGEVEHLAIFPATHFMTNDEHMEEAISKIQAEMENQVELFEKEGKLIEAQ 183

Query: 421 RLEQRITY 428
           R+ QR  Y
Sbjct: 184 RIRQRTEY 191


>gi|289808085|ref|ZP_06538714.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 127

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 83/126 (65%), Positives = 101/126 (80%)

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
           +GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EYGFRLPS +D
Sbjct: 1   SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 60

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           NRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP +E+R   TQV+
Sbjct: 61  NRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPIIEVRPVATQVD 120

Query: 570 DVYDEI 575
           D+  EI
Sbjct: 121 DLLSEI 126


>gi|294637391|ref|ZP_06715684.1| excinuclease ABC subunit B [Edwardsiella tarda ATCC 23685]
 gi|291089438|gb|EFE21999.1| excinuclease ABC subunit B [Edwardsiella tarda ATCC 23685]
          Length = 185

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 99/181 (54%), Positives = 125/181 (69%), Gaps = 13/181 (7%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           IIRDLRLG+FD LVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAARN+N
Sbjct: 1   IIRDLRLGEFDALVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLN 60

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743
            K ILY D+IT S+  AI ET RRRE+Q   N  H I PQ++ +K+ +++    L DAAT
Sbjct: 61  GKAILYGDSITPSMARAIGETERRRERQQAFNLAHGIVPQALNKKVTDILQ---LGDAAT 117

Query: 744 TN--------ISIDAQQL--SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                      + + Q+    LS K+ +  ++ L  QM+  A NL FE+AA +RDEI +L
Sbjct: 118 RGRGKGTRGQRAAEPQRAYSGLSAKQLEQQIQRLESQMYQHAQNLEFEQAAALRDEIHQL 177

Query: 794 K 794
           +
Sbjct: 178 R 178


>gi|307944240|ref|ZP_07659581.1| UvrABC system protein B [Roseibium sp. TrichSKD4]
 gi|307772586|gb|EFO31806.1| UvrABC system protein B [Roseibium sp. TrichSKD4]
          Length = 284

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 90/152 (59%), Positives = 114/152 (75%), Gaps = 1/152 (0%)

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD +T S+  AI ET
Sbjct: 11  GLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADNMTGSMDRAIKET 70

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
            RRREKQL +N++H I P+SVK  I ++++ +  +D  T      A+  +L     KAH+
Sbjct: 71  NRRREKQLAYNEEHGITPESVKRSIGDILESVYEQDHVTVEAGF-AEDGNLVGHNLKAHI 129

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + L KQM  AA +L+FE AAR+RDEIKRL+ +
Sbjct: 130 EDLEKQMRDAAADLDFETAARLRDEIKRLQET 161


>gi|270659740|ref|ZP_06222388.1| UvrABC system, protein B [Haemophilus influenzae HK1212]
 gi|270316921|gb|EFA28617.1| UvrABC system, protein B [Haemophilus influenzae HK1212]
          Length = 139

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/139 (59%), Positives = 105/139 (75%)

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MYRGD  RK TL EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I+
Sbjct: 1   MYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEII 60

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           +Q++RPTGL+DP +EIR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E 
Sbjct: 61  DQVVRPTGLLDPLIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEH 120

Query: 606 NIRVRYMHSEVKTLERIEI 624
            IRVRY+HS++ T+ER+EI
Sbjct: 121 GIRVRYLHSDIDTVERVEI 139


>gi|156185986|gb|ABU55311.1| excinuclease ABC subunit B [Callosobruchus chinensis]
          Length = 122

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 80/120 (66%), Positives = 99/120 (82%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           L+ G++S ++ Q+LLGVTGSGKTFTMA VI    RPA++MA NK LAAQLY E K  FP+
Sbjct: 3   LIAGLNSNKRDQILLGVTGSGKTFTMANVIARTNRPALIMAHNKTLAAQLYEEMKGLFPN 62

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           NAV YF+SYYDYYQ EAY+P+TDTYIEK+S+IN++ID +R+SA  SLLER D IVV+SVS
Sbjct: 63  NAVGYFISYYDYYQSEAYLPQTDTYIEKDSAINDRIDMLRYSAVCSLLERRDTIVVASVS 122


>gi|119632706|gb|ABL84360.1| excinuclease ABC, B subunit [Streptococcus suis]
          Length = 167

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 127/173 (73%), Gaps = 11/173 (6%)

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           DLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAARN    V
Sbjct: 1   DLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHV 60

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
           I+YAD +T+S++ A++ET RRR+ Q+ +N++H I PQ++K++I ++I       + T  +
Sbjct: 61  IMYADKVTESMRKAMEETARRRQIQMAYNEEHGIIPQTIKKEIRDLI-------SVTKAV 113

Query: 747 SIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + D +++    +L+K + KA +K L  QM  AA+ L+FE AA+IRD +  LK+
Sbjct: 114 TQDKEEVVDFNALNKDERKAMIKKLEGQMQEAAEVLDFELAAQIRDMVIELKN 166


>gi|257413531|ref|ZP_04743369.2| excinuclease ABC, B subunit [Roseburia intestinalis L1-82]
 gi|257203152|gb|EEV01437.1| excinuclease ABC, B subunit [Roseburia intestinalis L1-82]
          Length = 122

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/115 (65%), Positives = 93/115 (80%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L+KG     + Q LLGVTGSGKTFTMA VI+A+ +P ++++
Sbjct: 8   FKLHSKYKPTGDQPHAIEELVKGFEEGNQFQTLLGVTGSGKTFTMANVIQALNKPTLIIS 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP+TDTYI K+S+INE+I
Sbjct: 68  HNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIAKDSAINEEI 122


>gi|255019193|ref|ZP_05291319.1| excinuclease ABC subunit B [Listeria monocytogenes FSL F2-515]
          Length = 177

 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 83/177 (46%), Positives = 111/177 (62%)

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           L ER D I+++SVSCIYG+GS   Y +M+V L++G  + + +LL  LV  QY R DI   
Sbjct: 1   LFERRDVIIIASVSCIYGLGSPIEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRNDIDFQ 60

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           RG FRV GD +EIFP+  ++   R+  FG++IE I E   LTG+ I   E + I+  SH+
Sbjct: 61  RGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGEREHVSIFPASHF 120

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           VT    +  A+  IK EL+ RL  L  + +LLEAQRLEQR  YDLEM+E  G C  I
Sbjct: 121 VTRPDIMKKAIVNIKAELEDRLKVLRADNKLLEAQRLEQRTNYDLEMMEEMGYCSGI 177


>gi|207110031|ref|ZP_03244193.1| excinuclease ABC subunit B [Helicobacter pylori HPKX_438_CA4C1]
          Length = 131

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/118 (63%), Positives = 93/118 (78%)

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  +IR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 11  SEIDAIERNHLIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 70

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E
Sbjct: 71  TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEE 128


>gi|145629307|ref|ZP_01785106.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21]
 gi|144978810|gb|EDJ88533.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21]
          Length = 115

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 80/105 (76%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
            L +DESHVT+PQI GMYRGD  RK TL EYGFRLPS +DNRPLRFEE+  L P TI VS
Sbjct: 3   FLIIDESHVTVPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVS 62

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           ATPG +ELE+    I++Q++RPTGL+DP +EIR    QV+D+  E
Sbjct: 63  ATPGPYELEKSGSEIIDQVVRPTGLLDPLIEIRPVSIQVDDLLSE 107


>gi|207109632|ref|ZP_03243794.1| excinuclease ABC subunit B [Helicobacter pylori HPKX_438_CA4C1]
          Length = 129

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/129 (51%), Positives = 93/129 (72%), Gaps = 3/129 (2%)

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           +N A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C+ IENY+R+ TG
Sbjct: 1   MNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTG 60

Query: 452 RNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
           + P E P  LF+Y+     + L+ VDESHV++PQ  GMY GD  RK+ L EYGFRLPS +
Sbjct: 61  KAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSAL 120

Query: 509 DNRPLRFEE 517
           DNRPL+F+E
Sbjct: 121 DNRPLKFDE 129


>gi|289644706|ref|ZP_06476767.1| UvrB/UvrC protein [Frankia symbiont of Datisca glomerata]
 gi|289505495|gb|EFD26533.1| UvrB/UvrC protein [Frankia symbiont of Datisca glomerata]
          Length = 195

 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 112/184 (60%), Gaps = 28/184 (15%)

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           INLLREGLD+PE  LV+ILDADKEGFLRS  SLIQTIGRAARNV+ +V +YAD +T S++
Sbjct: 1   INLLREGLDLPEVSLVSILDADKEGFLRSDKSLIQTIGRAARNVSGQVHMYADKVTPSMR 60

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL----- 753
            AI+ET RRR KQ+ +N +  ++PQ +++K+++++D ++ E A    I    +       
Sbjct: 61  RAIEETNRRRVKQIAYNTERGVDPQPLRKKVIDILDDLVRESAEGEVIGGGGRARSRGKV 120

Query: 754 ---SLSKKKGKAH--------------------LKSLRKQMHLAADNLNFEEAARIRDEI 790
               +S K G+                      ++ L  QMH AA  L FE AAR+RDEI
Sbjct: 121 PAPGMSSKAGRDGAVGRHAAQLAGMPSADLAQLIRQLDDQMHEAAKELQFELAARLRDEI 180

Query: 791 KRLK 794
             LK
Sbjct: 181 AELK 184


>gi|289811031|ref|ZP_06541660.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 97

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/85 (78%), Positives = 77/85 (90%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLR
Sbjct: 12  RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 71

Query: 644 EGLDIPECGLVAILDADKEGFLRSK 668
           EGLD+PE  LVAILDADKEGFLRS+
Sbjct: 72  EGLDMPEVSLVAILDADKEGFLRSE 96


>gi|1149714|emb|CAA60243.1| uvrB [Clostridium perfringens]
          Length = 87

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 58/87 (66%), Positives = 74/87 (85%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
            + L  +FK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RHSAT +
Sbjct: 1   GSALIVKFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSA 60

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQ 292
           LLER D I+V+SVSCIYG+G+ E Y +
Sbjct: 61  LLERRDVIIVASVSCIYGLGNPEEYKK 87


>gi|167957442|ref|ZP_02544516.1| excinuclease ABC, B subunit [candidate division TM7 single-cell
           isolate TM7c]
          Length = 89

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/89 (65%), Positives = 71/89 (79%)

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           MA +I   Q P +V+A NK LAAQLYSEFK FFP N V YFVSY+DYYQPEAY+  +DTY
Sbjct: 1   MANIIANYQAPTLVLAHNKTLAAQLYSEFKQFFPENEVHYFVSYFDYYQPEAYIASSDTY 60

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCI 273
           IEK+S IN++IDR+RH+AT +LL R+D I
Sbjct: 61  IEKDSKINDEIDRLRHAATTALLTRSDTI 89


>gi|167759752|ref|ZP_02431879.1| hypothetical protein CLOSCI_02113 [Clostridium scindens ATCC 35704]
 gi|167662619|gb|EDS06749.1| hypothetical protein CLOSCI_02113 [Clostridium scindens ATCC 35704]
          Length = 111

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/108 (55%), Positives = 76/108 (70%)

Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180
           K+W       + N   ++  F++Q  Y P+GDQP AIA+L+KG     + Q LLGVTGSG
Sbjct: 4   KMWLILNVSKVTNGGFNMPEFKLQAPYQPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSG 63

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           KTFTMA VI+ +Q+P +V+A NK LAAQLY EFK  FP+NAVEYFVSY
Sbjct: 64  KTFTMANVIQELQKPTLVIAHNKTLAAQLYGEFKEMFPNNAVEYFVSY 111


>gi|7650358|gb|AAF66010.1|AF228519_1 UvrB [Aliivibrio fischeri]
          Length = 165

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 105/161 (65%), Gaps = 16/161 (9%)

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           D+PE  LVAILDADKEGFLRS+ SLIQTIGRAARN+  K ILYAD IT S++ AI ET R
Sbjct: 1   DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLEGKAILYADKITGSMEKAIGETER 60

Query: 707 RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK--KKGKAH- 763
           RREKQ  HN+   I PQ++K+ + ++++   L D       + A ++ LS+  ++G ++ 
Sbjct: 61  RREKQQLHNEALGIVPQALKKDVADILE---LGDMTKNKRKVVAPKIKLSEVAEEGASYS 117

Query: 764 ----------LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                     ++ L  +M+  A +L FE+AA++RDEI  L+
Sbjct: 118 AMSPQQLEKAIQKLESKMYQHAKDLEFEQAAQVRDEIDNLR 158


>gi|403956|gb|AAB01010.1| Homology to GenBank Accession Number M80215, uvrB [Mycoplasma
           genitalium]
          Length = 115

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 64/114 (56%), Positives = 84/114 (73%)

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q++RPT LVDP + ++   TQVED+ +EI    Q   R  +TVLT +MAE+LTEYL ER 
Sbjct: 1   QLVRPTYLVDPIIVVKPKITQVEDLIEEIINQRQNNTRTFVTVLTIKMAENLTEYLKERK 60

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           I+V Y+H ++K LER+ +I DLR G+++ LVGINLLREGLD+PE  LV I DAD
Sbjct: 61  IKVAYIHKDIKALERLLLINDLRRGEYECLVGINLLREGLDVPEVALVCIFDAD 114


>gi|266621880|ref|ZP_06114815.1| excinuclease ABC subunit B [Clostridium hathewayi DSM 13479]
 gi|288866412|gb|EFC98710.1| excinuclease ABC subunit B [Clostridium hathewayi DSM 13479]
          Length = 104

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/90 (62%), Positives = 71/90 (78%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI  L+KG     + + LLGVTGSGKTFTMA VI+ +Q+P +++A
Sbjct: 3   FKLHSEYQPTGDQPQAIEALVKGFKEGSQFETLLGVTGSGKTFTMANVIQQLQKPTLIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
            NK LAAQLYSEFK FFP NAVEYFVSYY+
Sbjct: 63  HNKTLAAQLYSEFKEFFPENAVEYFVSYYE 92


>gi|167771501|ref|ZP_02443554.1| hypothetical protein ANACOL_02871 [Anaerotruncus colihominis DSM
           17241]
 gi|167666141|gb|EDS10271.1| hypothetical protein ANACOL_02871 [Anaerotruncus colihominis DSM
           17241]
          Length = 109

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/91 (60%), Positives = 68/91 (74%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L  GI +    Q LLGVTGSGKTFTMA +IE + RP +++A
Sbjct: 9   FKLVSPFKPTGDQPEAIEKLTHGILAGAHEQTLLGVTGSGKTFTMANIIERVNRPTLILA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
            NK LAAQL SEF+ FFP NAVEYFVSYY Y
Sbjct: 69  HNKTLAAQLCSEFREFFPENAVEYFVSYYHY 99


>gi|15644499|ref|NP_229551.1| excinuclease ABC, subunit B-related protein [Thermotoga maritima
           MSB8]
 gi|4982331|gb|AAD36818.1|AE001813_10 excinuclease ABC, subunit B-related protein [Thermotoga maritima
           MSB8]
          Length = 99

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 69/86 (80%)

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           G+NLLREGLD+ E   VAI+DAD EGFLRS+T+LIQ IGR ARNVN KVI+YAD IT ++
Sbjct: 12  GVNLLREGLDLLEVSPVAIMDADVEGFLRSETTLIQIIGRTARNVNGKVIMYADRITNAM 71

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQ 723
           + AI+ET RRR  QLE+N+KH I  Q
Sbjct: 72  KRAIEETNRRRRIQLEYNRKHGITLQ 97


>gi|153854537|ref|ZP_01995807.1| hypothetical protein DORLON_01802 [Dorea longicatena DSM 13814]
 gi|149752846|gb|EDM62777.1| hypothetical protein DORLON_01802 [Dorea longicatena DSM 13814]
          Length = 95

 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 55/87 (63%), Positives = 67/87 (77%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  Y P+GDQP AIA+L+KG     + Q LLGVTGSGKTFTMA VI+ +Q+P +V+A
Sbjct: 9   FKLKAPYEPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLQKPTLVIA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVS 227
            NK LAAQLY EFK  FP NAVEYFVS
Sbjct: 69  HNKTLAAQLYGEFKEMFPDNAVEYFVS 95


>gi|197302480|ref|ZP_03167535.1| hypothetical protein RUMLAC_01208 [Ruminococcus lactaris ATCC
           29176]
 gi|197298378|gb|EDY32923.1| hypothetical protein RUMLAC_01208 [Ruminococcus lactaris ATCC
           29176]
          Length = 90

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/87 (59%), Positives = 67/87 (77%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL++G     + Q LLGVTGSGKTFTMA VI+ + +P +++A
Sbjct: 4   FKLVSEYSPTGDQPQAIEQLVQGFKEGNQCQTLLGVTGSGKTFTMANVIQELNKPTLIIA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVS 227
            NK LA QLY EFK FFP+NAVEYFVS
Sbjct: 64  HNKTLAVQLYGEFKEFFPNNAVEYFVS 90


>gi|166030531|ref|ZP_02233360.1| hypothetical protein DORFOR_00192 [Dorea formicigenerans ATCC
           27755]
 gi|166029693|gb|EDR48450.1| hypothetical protein DORFOR_00192 [Dorea formicigenerans ATCC
           27755]
          Length = 102

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/89 (60%), Positives = 67/89 (75%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           ++  ++  Y P+GDQP AIA+L+KG     + Q LLGVTGSGKTFTMA VI+ +Q+P +V
Sbjct: 14  SYLLIKAPYKPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLQKPTLV 73

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +A NK LAAQLY EFK  FP NAVEYFVS
Sbjct: 74  IAHNKTLAAQLYGEFKEMFPDNAVEYFVS 102


>gi|291520738|emb|CBK79031.1| Helicase subunit of the DNA excision repair complex [Coprococcus
           catus GD/7]
          Length = 90

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/87 (59%), Positives = 66/87 (75%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL+KG     + + LLGVTGSGKTFTMA VI  + +P +++A
Sbjct: 4   FELVSEYAPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIARLNKPTLILA 63

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVS 227
            NK LAAQLY E K FFP+NAVEYFVS
Sbjct: 64  HNKTLAAQLYGEMKEFFPNNAVEYFVS 90


>gi|10047453|gb|AAG12250.1|AF204056_1 uvrABC excinuclease subunit B [Agrobacterium tumefaciens str. C58]
          Length = 71

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/71 (73%), Positives = 63/71 (88%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M ++Y P+GDQP AIA L++GI+S E+ Q+LLGVTGSGKTFTMAKVIEA QRPA+++APN
Sbjct: 1   MDSEYQPAGDQPTAIADLVEGINSGERTQVLLGVTGSGKTFTMAKVIEATQRPAVILAPN 60

Query: 203 KILAAQLYSEF 213
           K LAAQLYSEF
Sbjct: 61  KTLAAQLYSEF 71


>gi|167946342|ref|ZP_02533416.1| excinuclease ABC subunit B [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 77

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/66 (77%), Positives = 56/66 (84%)

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           INLLREGLD+PE  LVAILDADKEGFLRS  +LIQTIGR+ARN N K ILYAD IT S++
Sbjct: 2   INLLREGLDMPEVSLVAILDADKEGFLRSVGALIQTIGRSARNANGKAILYADEITGSMR 61

Query: 699 LAIDET 704
            AIDET
Sbjct: 62  RAIDET 67


>gi|15896463|ref|NP_349812.1| transcription-repair coupling factor [Clostridium acetobutylicum
           ATCC 824]
 gi|15026288|gb|AAK81152.1|AE007817_6 Transcription-repair coupling factor, MFD (superfamily II helicase
           ) [Clostridium acetobutylicum ATCC 824]
 gi|325510621|gb|ADZ22257.1| Transcription-repair coupling factor, MFD (superfamily II helicase
           ) [Clostridium acetobutylicum EA 2018]
          Length = 1171

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 123/509 (24%), Positives = 222/509 (43%), Gaps = 62/509 (12%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           I S E    L G++ SGK++ ++ + E +  P +V+  +   A ++Y +    F   +V 
Sbjct: 23  IKSNEFPMELSGISESGKSYLISGLYEELDNPFLVITDSDSEAKKIYEDL--LFYTQSV- 79

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
                  YY P   V   + Y     +++  +   R    R ++ R   I+V+SV  +  
Sbjct: 80  -------YYLPTKEVVFYNIY-----AVSGDLRWERLKVIRKMMSRGKKIIVTSVENLAA 127

Query: 284 IG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           +   VE Y +   +L +GD+VE KEL   LV+  Y+  +    +G F + G  ++I+ S 
Sbjct: 128 VYLPVELYKEYTFKLTLGDTVEAKELQKKLVQCGYEHVESVDAKGQFSIRGGIVDIY-SP 186

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
           ++DV +R+  FG++IE I  F   + + I  V  I+++     +     LN   + IK+E
Sbjct: 187 IDDVPYRIEFFGDEIESIRSFNTESQRSIEKVNKIEVFPAKEIILTDEALNKGYEAIKDE 246

Query: 403 LKMRLIELEKEGRLLEA-QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           L   L  L  +G   E+  +L++ + Y+LE L+     ++I+ +  Y       +   + 
Sbjct: 247 LNQSLDRL--KGNNEESYNKLKETMEYNLEALKERAGFETIDTFIPYFY-----DNTSSF 299

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
           F+Y+ ++S++FVD       +I  +Y           E G  LP                
Sbjct: 300 FDYL-KNSIIFVDNYERCKGKIDSVYCEFEQNYENFLERGDILP---------------- 342

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRP------TGLVDPPVEIRSARTQVEDVYDEI 575
           +   I+VS       L+  + I +E I R       TG+    + + S + Q++ + ++I
Sbjct: 343 KQGNIIVSKENIYEILKTEKRINLESIGRAANNNFRTGIAFEEITLSSYQGQMDLLINDI 402

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               ++  R ++   TK   + L E L +R I   Y  S          I ++  G+  +
Sbjct: 403 KELKEEKYRTVILCGTKSKGQRLVETLGDRGIESVYKDS----------ILNVDYGEVVI 452

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGF 664
             G  L   G   PE  L  I  +DKE F
Sbjct: 453 SPGSQL--RGFRYPEIRLCVI--SDKEIF 477



 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           K MA +L + + E  I + +     + LE++ I  D   G +D+L+   ++  G+DI   
Sbjct: 848 KEMAANLGKLIPEARIAIAHGQMSERELEKVMI--DFMEGNYDILLCTTIIETGIDIQNV 905

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             + I +ADK G     + L Q  GR  R
Sbjct: 906 NTLIIYNADKMGL----SQLYQLRGRVGR 930


>gi|329577602|gb|EGG59035.1| conserved domain protein [Enterococcus faecalis TX1467]
          Length = 88

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/78 (56%), Positives = 59/78 (75%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQPAAIA+L+ G+   EK Q+LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 10  FHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFP 218
            NK LA QLY EFK FFP
Sbjct: 70  HNKTLAGQLYGEFKEFFP 87


>gi|328465651|gb|EGF36870.1| excinuclease ABC subunit B [Lactobacillus rhamnosus MTCC 5462]
          Length = 116

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/117 (44%), Positives = 76/117 (64%), Gaps = 1/117 (0%)

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +N++ID++RHSAT +LLERND IVV+SVS I+G+G    Y   ++ L+ G ++++  LL 
Sbjct: 1   MNDEIDKLRHSATSALLERNDVIVVASVSSIFGLGDPHEYKNHVLSLRTGMTIDRNTLLR 60

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
            LV  Q+ R DI   RG FRV GD +EIFP+    +      FG++I+ I+E   LT
Sbjct: 61  QLVDIQFDRNDIDFQRGRFRVRGDVVEIFPAS-RVITPSALNFGDEIDRITEVDALT 116


>gi|289810193|ref|ZP_06540822.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 144

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/144 (41%), Positives = 85/144 (59%), Gaps = 22/144 (15%)

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS+ SLIQTIGRAARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ +
Sbjct: 1   RSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 60

Query: 726 KEKIMEVIDPILLEDAATTNISIDAQ---------------QLSLSKKKGKAHLKSLRKQ 770
            +K+++++       A   NI+                   +L ++ K  +  +  L +Q
Sbjct: 61  NKKVVDIL-------ALGQNIAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEEQ 113

Query: 771 MHLAADNLNFEEAARIRDEIKRLK 794
           M   A NL FEEAA+IRD++ +L+
Sbjct: 114 MMQHAQNLEFEEAAQIRDQLHQLR 137


>gi|158321662|ref|YP_001514169.1| transcription-repair coupling factor [Alkaliphilus oremlandii
           OhILAs]
 gi|158141861|gb|ABW20173.1| transcription-repair coupling factor [Alkaliphilus oremlandii
           OhILAs]
          Length = 1174

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 152/336 (45%), Gaps = 61/336 (18%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           Q+ K I SR+    L G+  + K+     + + ++    ++  N++ A Q+Y + K +  
Sbjct: 18  QVRKNIESRKSPIALYGLNDTQKSHIAYGIQDEIKGQVCIVTYNEMEARQIYEDLKFYAG 77

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
             A+        +Y  EA            +S N Q +RM+  A  ++LE +DCIVV+++
Sbjct: 78  DRAIFLPSKEIMFYNMEA------------TSRNAQEERMK--AIETILEGSDCIVVTAI 123

Query: 279 SCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
                +    S Y++  +  ++GD+V+ ++++ +LV Q Y+R+DI   RG F + GD I+
Sbjct: 124 DTFLRLMPPPSAYTKNQISFQVGDTVDLEKVIENLVMQGYEREDIVEERGQFSIRGDIID 183

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA---------------- 381
           IFPS  E +  RV +FG++I+ I  F P T + +  +E +K+YA                
Sbjct: 184 IFPSSAE-MPVRVELFGDEIDSIRNFQPATQRSLDKIEAVKVYAAKETTIESFDVEAVIL 242

Query: 382 --NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
             N  Y      LN A    KE LK  L EL                    E L + G+ 
Sbjct: 243 KLNQDYKNISKKLNQAA---KENLKNSLEELS-------------------EKLRSLGNF 280

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           + +E    Y+      E    L  Y  +++L  +DE
Sbjct: 281 RGVEKLLPYIY-----EKTTCLLHYFKDNALFILDE 311



 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H ++   E  +I+ +   G++D+LV   ++  G+DI     + I DADK G    
Sbjct: 862 RVAVAHGQMSERELEKIMLEYMNGEYDILVSTTIIETGMDISNVNTIIIQDADKLGL--- 918

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 919 -SQLYQLRGRVGRS 931


>gi|331268338|ref|YP_004394830.1| transcription-repair coupling factor [Clostridium botulinum
           BKT015925]
 gi|329124888|gb|AEB74833.1| transcription-repair coupling factor [Clostridium botulinum
           BKT015925]
          Length = 1169

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 107/526 (20%), Positives = 235/526 (44%), Gaps = 62/526 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q      ++K I   E    + G + SG+ + +  + +   RP  +   + + A  LY +
Sbjct: 12  QNNEFENIVKNIQKDEFPIDVTGFSESGRAYFIKGIYDNEDRPIFIFTNSDVEAKNLYED 71

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
              + P+           YY P   V   + Y     +I+  +   R    R +L ++  
Sbjct: 72  LSLYIPNV----------YYFPNKEVVFYNVY-----AISGDLRWERLKIIREMLRQDRK 116

Query: 273 IVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IVV+S+  +     S + Y +  + + +GD ++ + L   L++  Y+R  I   +G F V
Sbjct: 117 IVVASIETLASTYISPKLYREYTINISVGDILDIEVLSEKLIQSGYQRTSIVEGKGEFSV 176

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++I+ S +  + +R+ +FG++++ I  F   + + I   ++++I+     V  + +
Sbjct: 177 RGGILDIY-SPISSIPFRIELFGDEVDSIRSFNTESQRSIEKYKSMEIFPAKELVLTKES 235

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           ++    +IK++L+   + L+++  +LE  ++E+    +LE L+ + S ++++++  Y   
Sbjct: 236 IDKGYNFIKDDLEKVKVSLKEDKDILE--KIEKDTLANLESLKESWSFENMDSFMPYFY- 292

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               E   TL +Y+ E+ L+F+++   ++ ++  +Y            + F     ++N 
Sbjct: 293 ----ENSSTLLDYM-ENPLVFINDVQRSLGKLDTVY------------FEF-----IENY 330

Query: 512 PLRFEEWNCL-RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-------VEIRS 563
               E+ N L R + ++VS      ++     I +  I +   ++ P        + + S
Sbjct: 331 KHLLEKGNILSRQSELLVSKDELIQKITDSNIITLNVIYKERNILKPKHKESFEQIILNS 390

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              +++ + +EIN   Q G + L+   T+   E L E L + NI   Y           +
Sbjct: 391 YGGKLDLLVEEINSKKQNGYKTLILSGTRPRGERLVEALRDYNIESVYK----------D 440

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           ++ D+  G+  +  G  +  +G + P+  L  I D D  G  R +T
Sbjct: 441 VVDDIEFGEVAITFGNQM--KGFECPDLKLCVISDKDFFGKSRKRT 484


>gi|296131721|ref|YP_003638968.1| transcription-repair coupling factor [Thermincola sp. JR]
 gi|296030299|gb|ADG81067.1| transcription-repair coupling factor [Thermincola potens JR]
          Length = 1178

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 148/325 (45%), Gaps = 22/325 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           + A    L  G+      Q++ G++G+  ++ +A +IE +  PA++MAPN I A +   +
Sbjct: 12  ESAEFNSLTAGLKRGLAYQMVYGLSGAQNSYLIAGIIEKLNVPALIMAPNGIAAKKRLDD 71

Query: 213 FKNFFPHNAVEYFVSYYDYYQPE-AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
            +NF P+  + Y+        PE  +VP       KE +        R +    L+++++
Sbjct: 72  LRNFLPNREILYY--------PELEHVPFGSIAQSKELAAQ------RLAVLAKLVQQDN 117

Query: 272 CIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            I+V+ V  +Y  +     + +  + L +G  + Q++++   + Q Y+R ++    G F 
Sbjct: 118 LIIVAPVEALYQQLIPRSVFEKFSLCLSVGQIISQEKMIEVFLAQGYERVEMVEGPGQFS 177

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V G  I+IFP   E    R+ +F ++I+ I EF   + + +  ++   IY     V  R 
Sbjct: 178 VRGGIIDIFPQTRER-PLRIELFDDEIDSIREFKVDSQRSLNRLQEAVIYPAVELVVERE 236

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
               A   I  +       L+K G+     +L+++    +E L +    + +E Y  Y  
Sbjct: 237 NFVKAADLIAADFAEHGKRLKKIGKYEAFNKLQEKTKEIIEKLRSGLYIEGMEYYFSYFY 296

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDE 475
                    +L +Y+   ++LFV+E
Sbjct: 297 PEG-----ASLLDYLDRKTVLFVEE 316



 Score = 37.4 bits (85), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H ++K  +  +++ +   G++DVL+   ++  GLDIP    + + +AD+ G    
Sbjct: 868 RVAVAHGQMKEDQLEQVMLEFLEGEYDVLLCTTIIETGLDIPNVNTLIVDEADRMGL--- 924

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 925 -SQLYQLRGRVGRS 937


>gi|144897122|emb|CAM73986.1| Excinuclease ABC, B subunit [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 185

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/121 (42%), Positives = 80/121 (66%), Gaps = 7/121 (5%)

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN++ +VILYAD +T S++ AIDET RRREKQ  +N  H I P+ +K+ + +V++ + 
Sbjct: 42  AARNIDGRVILYADKMTDSLKYAIDETNRRREKQQAYNVAHGITPEGIKKAVGDVLESVY 101

Query: 738 LEDAATTNISIDAQQLSLSKKKGK--AHLKS-LRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +D  T    +D     L+   G   A +K+ + K+M  AA +L FEEAAR+RDE++RL+
Sbjct: 102 EKDYLT----VDTGDSGLAHGVGHNLAAVKADIEKRMKAAAADLEFEEAARLRDELRRLE 157

Query: 795 S 795
           +
Sbjct: 158 A 158


>gi|257417623|ref|ZP_05594617.1| transcription-repair coupling factor [Enterococcus faecalis
           AR01/DG]
 gi|257159451|gb|EEU89411.1| transcription-repair coupling factor [Enterococcus faecalis
           ARO1/DG]
          Length = 1179

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 252

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 253 AKDQ---TETDFLEEYFGQLLSFWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 305 LLFVDD 310



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 915 ---STLYQLRGRVGRS 927


>gi|307274221|ref|ZP_07555429.1| transcription-repair coupling factor [Enterococcus faecalis TX0855]
 gi|306509183|gb|EFM78245.1| transcription-repair coupling factor [Enterococcus faecalis TX0855]
 gi|315151127|gb|EFT95143.1| transcription-repair coupling factor [Enterococcus faecalis TX0012]
          Length = 1189

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  I+++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 262

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 315 LLFVDD 320



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 925 ---STLYQLRGRVGRS 937


>gi|256964180|ref|ZP_05568351.1| transcription-repair coupling factor [Enterococcus faecalis
           HIP11704]
 gi|256954676|gb|EEU71308.1| transcription-repair coupling factor [Enterococcus faecalis
           HIP11704]
          Length = 1179

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  I+++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 252

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 305 LLFVDD 310



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 915 ---STLYQLRGRVGRS 927


>gi|256762052|ref|ZP_05502632.1| transcription-repair coupling factor [Enterococcus faecalis T3]
 gi|256683303|gb|EEU22998.1| transcription-repair coupling factor [Enterococcus faecalis T3]
          Length = 1179

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  I+++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 252

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 305 LLFVDD 310



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 915 ---STLYQLRGRVGRS 927


>gi|312904634|ref|ZP_07763789.1| transcription-repair coupling factor [Enterococcus faecalis TX0635]
 gi|310631986|gb|EFQ15269.1| transcription-repair coupling factor [Enterococcus faecalis TX0635]
 gi|315160777|gb|EFU04794.1| transcription-repair coupling factor [Enterococcus faecalis TX0645]
 gi|315579376|gb|EFU91567.1| transcription-repair coupling factor [Enterococcus faecalis TX0630]
          Length = 1189

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  I+++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLAT 262

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 315 LLFVDD 320



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 925 ---STLYQLRGRVGRS 937


>gi|315026785|gb|EFT38717.1| transcription-repair coupling factor [Enterococcus faecalis TX2137]
          Length = 1189

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  I+++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLAT 262

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 315 LLFVDD 320



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 925 ---STLYQLRGRVGRS 937


>gi|327534054|gb|AEA92888.1| transcription-repair coupling factor [Enterococcus faecalis OG1RF]
          Length = 1189

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  I+++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLAT 262

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 315 LLFVDD 320



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 925 ---STLYQLRGRVGRS 937


>gi|227520043|ref|ZP_03950092.1| transcription-repair coupling factor [Enterococcus faecalis TX0104]
 gi|227072591|gb|EEI10554.1| transcription-repair coupling factor [Enterococcus faecalis TX0104]
          Length = 1189

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  I+++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKSDMNHGMMRLQDALEKRLAT 262

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 315 LLFVDD 320



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 925 ---STLYQLRGRVGRS 937


>gi|257088697|ref|ZP_05583058.1| transcription-repair coupling factor [Enterococcus faecalis CH188]
 gi|256997509|gb|EEU84029.1| transcription-repair coupling factor [Enterococcus faecalis CH188]
          Length = 1179

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  I+++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLAT 252

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 305 LLFVDD 310



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 915 ---STLYQLRGRVGRS 927


>gi|293382707|ref|ZP_06628632.1| transcription-repair coupling factor [Enterococcus faecalis R712]
 gi|293388111|ref|ZP_06632638.1| transcription-repair coupling factor [Enterococcus faecalis S613]
 gi|307268510|ref|ZP_07549885.1| transcription-repair coupling factor [Enterococcus faecalis TX4248]
 gi|312908603|ref|ZP_07767545.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
           512]
 gi|312909249|ref|ZP_07768106.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
           516]
 gi|291079867|gb|EFE17231.1| transcription-repair coupling factor [Enterococcus faecalis R712]
 gi|291082487|gb|EFE19450.1| transcription-repair coupling factor [Enterococcus faecalis S613]
 gi|306515171|gb|EFM83711.1| transcription-repair coupling factor [Enterococcus faecalis TX4248]
 gi|310625390|gb|EFQ08673.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
           512]
 gi|311290491|gb|EFQ69047.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
           516]
 gi|315032977|gb|EFT44909.1| transcription-repair coupling factor [Enterococcus faecalis TX0017]
 gi|315036610|gb|EFT48542.1| transcription-repair coupling factor [Enterococcus faecalis TX0027]
 gi|315147120|gb|EFT91136.1| transcription-repair coupling factor [Enterococcus faecalis TX4244]
          Length = 1189

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 262

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 315 LLFVDD 320



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 925 ---STLYQLRGRVGRS 937


>gi|257088020|ref|ZP_05582381.1| transcription-repair coupling factor [Enterococcus faecalis D6]
 gi|256996050|gb|EEU83352.1| transcription-repair coupling factor [Enterococcus faecalis D6]
          Length = 1179

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  I+++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLAT 252

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 305 LLFVDD 310



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 915 ---STLYQLRGRVGRS 927


>gi|229546913|ref|ZP_04435638.1| transcription-repair coupling factor [Enterococcus faecalis TX1322]
 gi|312952657|ref|ZP_07771521.1| transcription-repair coupling factor [Enterococcus faecalis TX0102]
 gi|229307841|gb|EEN73828.1| transcription-repair coupling factor [Enterococcus faecalis TX1322]
 gi|310629445|gb|EFQ12728.1| transcription-repair coupling factor [Enterococcus faecalis TX0102]
 gi|315153559|gb|EFT97575.1| transcription-repair coupling factor [Enterococcus faecalis TX0031]
 gi|315156261|gb|EFU00278.1| transcription-repair coupling factor [Enterococcus faecalis TX0043]
          Length = 1189

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 262

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 315 LLFVDD 320



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 925 ---STLYQLRGRVGRS 937


>gi|229550502|ref|ZP_04439227.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
           29200]
 gi|307286964|ref|ZP_07567039.1| transcription-repair coupling factor [Enterococcus faecalis TX0109]
 gi|307290197|ref|ZP_07570115.1| transcription-repair coupling factor [Enterococcus faecalis TX0411]
 gi|229304359|gb|EEN70355.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
           29200]
 gi|306498753|gb|EFM68252.1| transcription-repair coupling factor [Enterococcus faecalis TX0411]
 gi|306501910|gb|EFM71199.1| transcription-repair coupling factor [Enterococcus faecalis TX0109]
 gi|315028825|gb|EFT40757.1| transcription-repair coupling factor [Enterococcus faecalis TX4000]
 gi|315168150|gb|EFU12167.1| transcription-repair coupling factor [Enterococcus faecalis TX1341]
 gi|315171410|gb|EFU15427.1| transcription-repair coupling factor [Enterococcus faecalis TX1342]
          Length = 1189

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 262

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 315 LLFVDD 320



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 925 ---STLYQLRGRVGRS 937


>gi|307278656|ref|ZP_07559726.1| transcription-repair coupling factor [Enterococcus faecalis TX0860]
 gi|306504716|gb|EFM73916.1| transcription-repair coupling factor [Enterococcus faecalis TX0860]
          Length = 1189

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 262

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 315 LLFVDD 320



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 925 ---STLYQLRGRVGRS 937


>gi|312901071|ref|ZP_07760360.1| transcription-repair coupling factor [Enterococcus faecalis TX0470]
 gi|311291817|gb|EFQ70373.1| transcription-repair coupling factor [Enterococcus faecalis TX0470]
          Length = 1189

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 262

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 315 LLFVDD 320



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 925 ---STLYQLRGRVGRS 937


>gi|315145387|gb|EFT89403.1| transcription-repair coupling factor [Enterococcus faecalis TX2141]
          Length = 1189

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 262

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 315 LLFVDD 320



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 925 ---STLYQLRGRVGRS 937


>gi|253681221|ref|ZP_04862019.1| transcription-repair coupling factor [Clostridium botulinum D str.
           1873]
 gi|253562459|gb|EES91910.1| transcription-repair coupling factor [Clostridium botulinum D str.
           1873]
          Length = 1169

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 110/527 (20%), Positives = 239/527 (45%), Gaps = 64/527 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q      ++K IH  E    + GV+ SG+ + +  + + + +P  +   + + A  LY +
Sbjct: 12  QDNKFKNIVKNIHKNEFPIDVTGVSESGRAYFIKGIYDNIDKPIFIFTNSDVEAKNLYED 71

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
              + P NA         YY P   V   + Y     +I+  +   R    R +L+++  
Sbjct: 72  LSLYIP-NA---------YYLPNKEVVFYNVY-----AISGDLRWERLKVIREMLKKDRK 116

Query: 273 IVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IVV+S+  +     S E Y +  + +  GD ++ +EL   L++  Y+R +I   +G F V
Sbjct: 117 IVVASIETLASTYISPELYKEYTINISKGDILDIEELSEKLIQSGYQRTNIVEGKGEFSV 176

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++I+ S +  + +R+ +FG++++ I  F   + + I+  + ++I+     +  + +
Sbjct: 177 RGGILDIY-SPISSIPFRIELFGDEVDSIRSFNTESQRSIKKYKAMEIFPAKELILTKES 235

Query: 392 LNTAMKYIKEEL-KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
           ++     I+++L K+++  L+ E  L   +++++    +LE L+ + + ++I+++  Y  
Sbjct: 236 IDKGYSSIRDDLEKIKVSLLDDEETL---EKIQKDTLDNLESLKESWNFENIDSFMPYFY 292

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
                E    L +Y+ EDSL+F+++   +  ++  +Y            + F     ++N
Sbjct: 293 -----ENKSMLLDYM-EDSLVFINDLQRSFGKLDTVY------------FEF-----IEN 329

Query: 511 RPLRFEEWNCL-RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-------VEIR 562
                E+ N L R   ++V       ++     I +  I +   ++ P        + + 
Sbjct: 330 YKHLLEKGNILSRQIELLVPKDELLQKIIDSNIITLNLIYKERDILKPKHKESFQQILLN 389

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           S   ++E + +EI++  Q+G + L+   T+   E L E L + NI   Y           
Sbjct: 390 SYEGKLELLLEEISIKKQRGYKTLILSGTRPRGERLVETLRDYNIESVYK---------- 439

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           +I+ ++  G+  +  G  +  +G + P+  L  I D D  G  R +T
Sbjct: 440 DIVDNIEFGEVVITFGNQI--KGFEYPDLKLCVISDKDFFGKSRKRT 484


>gi|307276446|ref|ZP_07557569.1| transcription-repair coupling factor [Enterococcus faecalis TX2134]
 gi|306506926|gb|EFM76073.1| transcription-repair coupling factor [Enterococcus faecalis TX2134]
          Length = 1189

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLAT 262

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 315 LLFVDD 320



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 925 ---STLYQLRGRVGRS 937


>gi|256855211|ref|ZP_05560572.1| transcription-repair coupling factor [Enterococcus faecalis T8]
 gi|256709724|gb|EEU24771.1| transcription-repair coupling factor [Enterococcus faecalis T8]
          Length = 1179

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 252

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 305 LLFVDD 310



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 915 ---STLYQLRGRVGRS 927


>gi|255971757|ref|ZP_05422343.1| transcription-repair coupling factor [Enterococcus faecalis T1]
 gi|257421547|ref|ZP_05598537.1| transcription-repair coupling factor [Enterococcus faecalis X98]
 gi|255962775|gb|EET95251.1| transcription-repair coupling factor [Enterococcus faecalis T1]
 gi|257163371|gb|EEU93331.1| transcription-repair coupling factor [Enterococcus faecalis X98]
 gi|323479470|gb|ADX78909.1| transcription-repair coupling factor [Enterococcus faecalis 62]
          Length = 1179

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 252

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 305 LLFVDD 310



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 915 ---STLYQLRGRVGRS 927


>gi|256956814|ref|ZP_05560985.1| transcription-repair coupling factor [Enterococcus faecalis DS5]
 gi|256960620|ref|ZP_05564791.1| transcription-repair coupling factor [Enterococcus faecalis Merz96]
 gi|257081545|ref|ZP_05575906.1| transcription-repair coupling factor [Enterococcus faecalis E1Sol]
 gi|294779317|ref|ZP_06744720.1| transcription-repair coupling factor [Enterococcus faecalis PC1.1]
 gi|300861968|ref|ZP_07108048.1| transcription-repair coupling factor [Enterococcus faecalis TUSoD
           Ef11]
 gi|256947310|gb|EEU63942.1| transcription-repair coupling factor [Enterococcus faecalis DS5]
 gi|256951116|gb|EEU67748.1| transcription-repair coupling factor [Enterococcus faecalis Merz96]
 gi|256989575|gb|EEU76877.1| transcription-repair coupling factor [Enterococcus faecalis E1Sol]
 gi|294453603|gb|EFG22002.1| transcription-repair coupling factor [Enterococcus faecalis PC1.1]
 gi|300848493|gb|EFK76250.1| transcription-repair coupling factor [Enterococcus faecalis TUSoD
           Ef11]
          Length = 1179

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 252

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 305 LLFVDD 310



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 915 ---STLYQLRGRVGRS 927


>gi|315165851|gb|EFU09868.1| transcription-repair coupling factor [Enterococcus faecalis TX1302]
          Length = 1189

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 138/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL  G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLFTGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 262

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 315 LLFVDD 320



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 925 ---STLYQLRGRVGRS 937


>gi|257078484|ref|ZP_05572845.1| transcription-repair coupling factor [Enterococcus faecalis JH1]
 gi|256986514|gb|EEU73816.1| transcription-repair coupling factor [Enterococcus faecalis JH1]
          Length = 1179

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 252

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 305 LLFVDD 310



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 915 ---STLYQLRGRVGRS 927


>gi|255974757|ref|ZP_05425343.1| transcription-repair coupling factor [Enterococcus faecalis T2]
 gi|255967629|gb|EET98251.1| transcription-repair coupling factor [Enterococcus faecalis T2]
          Length = 1179

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 252

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 305 LLFVDD 310



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 915 ---STLYQLRGRVGRS 927


>gi|329577443|gb|EGG58892.1| conserved domain protein [Enterococcus faecalis TX1467]
          Length = 542

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 139/309 (44%), Gaps = 29/309 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKE---SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGS 286
                      D  +  E   SS   + DR+  SA   L+  N  IVV  V+ +   + +
Sbjct: 92  ---------PVDEVLSAEMAFSSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPT 140

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            E++    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E  
Sbjct: 141 KETWQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-Y 199

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             RV +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ R
Sbjct: 200 PVRVELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKR 259

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L   + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+P
Sbjct: 260 LATAKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLP 311

Query: 467 EDSLLFVDE 475
           E+SLLFVD+
Sbjct: 312 ENSLLFVDD 320


>gi|315158594|gb|EFU02611.1| transcription-repair coupling factor [Enterococcus faecalis TX0312]
          Length = 1189

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 262

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QLKTTLLDYLPENS 314

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 315 LLFVDD 320



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 925 ---STLYQLRGRVGRS 937


>gi|256618332|ref|ZP_05475178.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
           4200]
 gi|256597859|gb|EEU17035.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
           4200]
          Length = 1179

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLAT 252

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 305 LLFVDD 310



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 915 ---STLYQLRGRVGRS 927


>gi|257084193|ref|ZP_05578554.1| transcription-repair coupling factor [Enterococcus faecalis Fly1]
 gi|256992223|gb|EEU79525.1| transcription-repair coupling factor [Enterococcus faecalis Fly1]
          Length = 1179

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLAT 252

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 305 LLFVDD 310



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 915 ---STLYQLRGRVGRS 927


>gi|315172643|gb|EFU16660.1| transcription-repair coupling factor [Enterococcus faecalis TX1346]
          Length = 1189

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQAMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLAT 262

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 315 LLFVDD 320



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 925 ---STLYQLRGRVGRS 937


>gi|118444361|ref|YP_877116.1| transcription-repair coupling factor [Clostridium novyi NT]
 gi|118134817|gb|ABK61861.1| transcription-repair coupling factor [Clostridium novyi NT]
          Length = 1170

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 103/492 (20%), Positives = 220/492 (44%), Gaps = 46/492 (9%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           + G++ SG+ + +  + E   +   +   + + A  LY +   + P+           YY
Sbjct: 32  ITGLSESGRAYFINGIYEQEDKSIFIFTNSDVEAKNLYEDLSLYVPNV----------YY 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG-SVESYS 291
            P   V   + Y     +I+  +   R    R +L++   ++V+S+  +     S E Y 
Sbjct: 82  FPNKEVVFYNVY-----AISGDLRWERLKVIREMLKKGKKVIVASIETLASTYISPELYK 136

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           +  +++ +GD ++ +EL   L++  Y+R  I   +G F + G  I+++ S +  V +R+ 
Sbjct: 137 KYTLKVSVGDVIDIEELSEKLIQGGYQRTSIVEGKGEFSIRGGIIDVY-SPISSVPYRIE 195

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +FG++++ I  F   + + I   ++I+I+     +  +  ++     IKE+L+    +L 
Sbjct: 196 LFGDEVDSIRSFNTESQRSIEKSKSIEIFPAKEMILTKENIDMGYNSIKEDLQKAKEKLV 255

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
            +  LL+   LE+    +LE L+ T S ++I++++ Y       E   TL +Y+  DSL+
Sbjct: 256 DDRELLD--NLEKNTISNLESLKETWSFENIDSFTPYFY-----ENTATLLDYM-NDSLV 307

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           FV +   ++ ++  +Y         L E G  L   ++    + +    ++ + I V+  
Sbjct: 308 FVTDVQRSLGKLDTVYFEFIENYKQLLERGTILSKQLELLVSKEDILEKIQKSNI-VTLN 366

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
             S E++  +    E   +          + S   +++ + +EIN    QG +IL+   T
Sbjct: 367 IISKEMDVLKSKHKESFNQTI--------LNSFGGKLDFLIEEINSKKSQGYKILILSGT 418

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +   E L + L + +I   Y           +++ ++  G  +V++      +G + PE 
Sbjct: 419 RPRGERLVDALRDYDIESAYK----------DVVDNIEFG--EVVITFGNQSKGFEYPEL 466

Query: 652 GLVAILDADKEG 663
            L  I D D  G
Sbjct: 467 KLCVISDKDFFG 478


>gi|328465671|gb|EGF36887.1| excinuclease ABC subunit B [Lactobacillus rhamnosus MTCC 5462]
          Length = 140

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 54/76 (71%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AIA+L KG    +K Q+LLG TG+GKTFTM+ +I  + +P ++++
Sbjct: 39  FDLVSPYKPAGDQPQAIAKLTKGFEEGKKAQILLGATGTGKTFTMSNIIANLNKPTLILS 98

Query: 201 PNKILAAQLYSEFKNF 216
            NK LA QLY EFK F
Sbjct: 99  HNKTLAGQLYGEFKEF 114


>gi|29374898|ref|NP_814051.1| transcription-repair coupling factor [Enterococcus faecalis V583]
 gi|227555903|ref|ZP_03985950.1| transcription-repair coupling factor [Enterococcus faecalis HH22]
 gi|29342356|gb|AAO80122.1| transcription-repair coupling factor [Enterococcus faecalis V583]
 gi|227174960|gb|EEI55932.1| transcription-repair coupling factor [Enterococcus faecalis HH22]
 gi|315573564|gb|EFU85755.1| transcription-repair coupling factor [Enterococcus faecalis
           TX0309B]
 gi|315582088|gb|EFU94279.1| transcription-repair coupling factor [Enterococcus faecalis
           TX0309A]
          Length = 1189

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLYWEIGTEVEPEILAQRLVLMGYERQAMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 262

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 263 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 314

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 315 LLFVDD 320



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 866 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 924

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 925 ---STLYQLRGRVGRS 937


>gi|207110335|ref|ZP_03244497.1| excinuclease ABC subunit B [Helicobacter pylori HPKX_438_CA4C1]
          Length = 112

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 74/111 (66%)

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           +SSIN+ ++R+R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K 
Sbjct: 1   DSSINDDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKS 60

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358
            L  LV+  Y R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE
Sbjct: 61  FLLKLVEMGYSRNEVVFDRGSFRAMGECVDIFPAYNDAEFIRIEFFGDEIE 111


>gi|257418651|ref|ZP_05595645.1| transcription-repair coupling factor [Enterococcus faecalis T11]
 gi|257160479|gb|EEU90439.1| transcription-repair coupling factor [Enterococcus faecalis T11]
          Length = 1179

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 23/306 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +      SS   + DR+  SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  ---PVDEVLSAEMAF---SSPEARADRV--SALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 134 WQNAQLYWEIGTEVEPEILAQRLVLMGYERQAMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLAT 252

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            + +    E   LE+     L   E     ++   Y+ +L      +   TL +Y+PE+S
Sbjct: 253 AKDQ---TETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY-----QQKTTLLDYLPENS 304

Query: 470 LLFVDE 475
           LLFVD+
Sbjct: 305 LLFVDD 310



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 856 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 914

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 915 ---STLYQLRGRVGRS 927


>gi|324556807|gb|ADY49814.1| UvrABC system protein B [Ascaris suum]
          Length = 65

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 47/65 (72%)

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M+   G C  IENY+RY+TG+  GEPP TL ++  +D LL VDESHVT+PQI GMY GD 
Sbjct: 1   MMNELGYCNGIENYTRYMTGKKKGEPPYTLLDFFGDDWLLVVDESHVTLPQIRGMYEGDH 60

Query: 492 HRKAT 496
           +RK T
Sbjct: 61  NRKQT 65


>gi|207109633|ref|ZP_03243795.1| excinuclease ABC subunit B [Helicobacter pylori HPKX_438_CA4C1]
          Length = 109

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/79 (50%), Positives = 54/79 (68%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA+
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPAL 60

Query: 198 VMAPNKILAAQLYSEFKNF 216
           +M+ NK L AQLYSEFK F
Sbjct: 61  IMSHNKTLCAQLYSEFKAF 79


>gi|207110368|ref|ZP_03244530.1| excinuclease ABC subunit B [Helicobacter pylori HPKX_438_CA4C1]
          Length = 107

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/96 (45%), Positives = 64/96 (66%)

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           L+F+E+       + VSATP   ELE  +  + EQIIRPTGL+DP  E+R +  QV+D++
Sbjct: 1   LKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLF 60

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           DEI L   +G R+L+T LTK+MAE+L +Y  E  ++
Sbjct: 61  DEIKLVVARGERVLITTLTKKMAEELCKYYAEWGLK 96


>gi|225734143|pdb|3FPN|B Chain B, Crystal Structure Of Uvra-Uvrb Interaction Domains
          Length = 106

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/103 (43%), Positives = 64/103 (62%)

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +GS E Y +++V L++G  +E+  LL  LV  QY R DI   RGTFRV GD +EIFP+  
Sbjct: 4   MGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRNDIDFRRGTFRVRGDVVEIFPASR 63

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           ++   RV  FG++IE I E   LTG+ +   E + I+  SH+V
Sbjct: 64  DEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIFPASHFV 106


>gi|169343325|ref|ZP_02864335.1| transcription-repair coupling factor [Clostridium perfringens C
           str. JGS1495]
 gi|169298623|gb|EDS80704.1| transcription-repair coupling factor [Clostridium perfringens C
           str. JGS1495]
          Length = 1168

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 152/336 (45%), Gaps = 43/336 (12%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ    +  SG+ P  I                 G++ SGK++ +  + E   +P +V+ 
Sbjct: 16  FQKVKSFMESGNYPVMIN----------------GLSDSGKSYFINGIYEESDKPIVVVT 59

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            N I A  +Y +   + P+                 Y+P  +       +I+  +   R 
Sbjct: 60  HNDIEARNIYEDLSFYLPN---------------VYYLPSREIVFYNIDAISGDLRWARL 104

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
              + +L     I+V+S+       +  E Y   I+++K+GD V+ KE+   L++  Y+R
Sbjct: 105 KVIKEMLRSTKKIIVTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYER 164

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +    +G F + G  +++FP +  +  +R+ +FG++++ I  F   + + I  V+  +I
Sbjct: 165 LETVEGKGEFSLRGGILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEI 223

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE-AQRLEQRITYDLEMLETTGS 438
           +     +  + T+  A++ +++EL     E EK+    E  +RL + I  ++E L+   S
Sbjct: 224 FPAKEVILSKETIEHAIEKMRKELS----EFEKKVSDKEIKERLRKLIERNIESLQENWS 279

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
            ++I++Y  +   +     P TLF+Y+   + +  D
Sbjct: 280 FETIDSYLPFFFDK-----PATLFDYLNNYTFIIDD 310


>gi|254520523|ref|ZP_05132579.1| transcription-repair coupling factor [Clostridium sp. 7_2_43FAA]
 gi|226914272|gb|EEH99473.1| transcription-repair coupling factor [Clostridium sp. 7_2_43FAA]
          Length = 1169

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/501 (20%), Positives = 216/501 (43%), Gaps = 54/501 (10%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G++ SGK++ + ++ E++  P I++  + + A  +Y +    F  N + YF         
Sbjct: 34  GLSDSGKSYGVFEIYESIDSPMIILTHSDMEAKNIYEDLS--FYTNDIYYF--------- 82

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS-VESYSQM 293
               P  +       +I+  +   R    + +L+  + I+V+S+  +  + +  E + + 
Sbjct: 83  ----PAKEVVFYNIDAISGDLRWARLKVIKEILDNKNKIIVTSIDTLTSVYTPKELFREY 138

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
             +L + D V  K+L   L++  Y+R +    +G F + G  +++FP  +    +R+ +F
Sbjct: 139 TFKLSVDDDVNFKDLSKKLLESGYERVEAVEGKGEFSLRGGILDVFPP-IATYPYRIELF 197

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
           G+ IE I  F   + + I  V+ I+I+     +     LN   + I +E +   I+ + +
Sbjct: 198 GDSIESIRTFNKESQRSIEKVDNIEIFPAKEIILNEEALNRGKEAILKEFQE--IKSKAK 255

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
           G     Q+LE  I+ ++E L  T + +++++Y  Y   +       + F Y+ +D +  +
Sbjct: 256 GNDERIQKLESIISANIESLTETLTFETLDSYLPYFYDKT-----DSFFSYV-KDYMYVI 309

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPS---CMDNRPLRFEEWNCLRPTTIVVSA 530
           D+      ++   Y           + G  LPS    + N+    E+    +  T+ V A
Sbjct: 310 DDVKKCEGKLESCYFEFSENYEAFLQRGGILPSQSKLLLNKDDLIEKLESQKSITLDVFA 369

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEINLAAQQGLRILLTV 589
                        I  +I+ P          + S + Q++ + D+I     +G + ++  
Sbjct: 370 -------------INSKILNPIERYSFNASTLNSYQGQLDLLIDDIKEKKSKGYKTIILS 416

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            T+   E L   L +R I   Y   ++K++E  E++  +  G        NLL+ G + P
Sbjct: 417 GTRTRGERLVNTLRDRKIESSY-REDIKSIEFGEVV--ITFG--------NLLK-GFEYP 464

Query: 650 ECGLVAILDADKEGFLRSKTS 670
           +  L  I D D  G  + K S
Sbjct: 465 DLKLCVISDKDVFGEAKRKIS 485


>gi|18311466|ref|NP_563400.1| transcription-repair coupling factor [Clostridium perfringens str.
           13]
 gi|18146150|dbj|BAB82190.1| transcription-repair coupling factor [Clostridium perfringens str.
           13]
          Length = 1162

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 152/336 (45%), Gaps = 43/336 (12%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ    +  SG+ P  I                 G++ SGK++ +  + E   +P +V+ 
Sbjct: 10  FQKVKSFMESGNYPVMIN----------------GLSDSGKSYFINGIYEESDKPIVVVT 53

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            N I A  +Y +   + P+                 Y+P  +       +I+  +   R 
Sbjct: 54  HNDIEARNIYEDLSFYLPNVY---------------YLPSREIVFYNIDAISGDLRWARL 98

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
              + +L     I+V+S+       +  E Y   I+++K+GD V+ KE+   L++  Y+R
Sbjct: 99  KVIKEMLRSTKKIIVTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYER 158

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +    +G F + G  +++FP +  +  +R+ +FG++++ I  F   + + I  V+  +I
Sbjct: 159 LETVEGKGEFSLRGGILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEI 217

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE-AQRLEQRITYDLEMLETTGS 438
           +     +  + T+  A++ +++EL     E EK+    E  +RL + I  ++E L+   S
Sbjct: 218 FPAKEVILSKETIEHAIEKMRKELS----EFEKKVSDKEIKERLRKLIERNIESLQENWS 273

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
            ++I++Y  +   +     P TLF+Y+   + +  D
Sbjct: 274 FETIDSYLPFFFDK-----PATLFDYLNNYTFIIDD 304


>gi|51894370|ref|YP_077061.1| transcription-repair coupling factor [Symbiobacterium thermophilum
           IAM 14863]
 gi|51858059|dbj|BAD42217.1| transcription-repair coupling factor [Symbiobacterium thermophilum
           IAM 14863]
          Length = 1243

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 117/250 (46%), Gaps = 15/250 (6%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A  + L  G+      Q++ GV GS K+  +A + E   RPA+V+      A Q   + +
Sbjct: 14  AEFSSLYDGMRRGFAEQMVYGVAGSLKSAFLAALRERTGRPALVITATIQQAEQFREDLE 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            + P   V  F        P  Y+P      E  +   E I + R S    L      IV
Sbjct: 74  TWLPGQDVALF-------PPMEYLP-----FEVMAHSPEVIGQ-RLSVLERLARGESLIV 120

Query: 275 VSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+  + +Y G+     + + ++ L+ G ++ + EL++ LV+Q Y+R D+   +G   V G
Sbjct: 121 VAPAAALYRGLTPSAVFRRSLLTLRPGQAIGRDELVARLVRQGYERVDMVESKGHVAVRG 180

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           + +++FP   E    RV+ +G++IEEI  F P T + +  V+ + +     ++ P   L 
Sbjct: 181 EIVDLFPLAAE-YPLRVAFWGDEIEEIRRFDPATQRTVEQVDALSVGPAREFILPEDGLE 239

Query: 394 TAMKYIKEEL 403
            A+  I+ +L
Sbjct: 240 PAIARIRRDL 249



 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 608 RVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           R+   H ++   +R+E I+ D   G++DVLV   ++  G+D+P+   + + DAD  G   
Sbjct: 925 RIAVAHGQMSE-DRLEKIVLDFMDGEYDVLVATTIIENGIDMPQVNTIIVEDADHLGL-- 981

Query: 667 SKTSLIQTIGRAARN 681
             + L Q  GR  R+
Sbjct: 982 --SQLYQLRGRVGRS 994


>gi|301300308|ref|ZP_07206515.1| transcription-repair coupling factor [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852081|gb|EFK79758.1| transcription-repair coupling factor [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 1174

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 120/251 (47%), Gaps = 17/251 (6%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
            +L G+ GS KT  +AK+++  + P +++  +   A QL S+ +N      +E F     
Sbjct: 26  HMLTGLVGSSKTLMIAKLLKDKKVPQLIVESDLYHAQQLQSDLENIIEDTRIELF----- 80

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVES 289
                   P  D  + + ++ + +    R SA  +L   N  IV+++V+ I   + SVE 
Sbjct: 81  --------PVEDMLVAEMATSSPEYRAQRVSALTALTSENPVIVITTVAGIRRFLPSVEY 132

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           + Q  +QL+IG  V+  EL   L +  Y R ++    G F + G  ++IFP    D  +R
Sbjct: 133 WKQHEIQLEIGKEVDPAELEKKLFEMGYIRSNMVNAPGDFAIRGSIVDIFPLD-ADNPYR 191

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           +  F  +I+ +  F     + I NVE + I   + ++  +  L  A + IK+E   +  +
Sbjct: 192 IDFFDIEIDSMRTFDIANQRSIENVEQVTIIPATDFIASKEVLELASEKIKKEYNKQFSK 251

Query: 410 LE--KEGRLLE 418
           L+  KE +L E
Sbjct: 252 LKNTKEEKLTE 262



 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V Y+H  +   +   I+ D   G++DVLV   ++  G+DIP    + + +AD++G    
Sbjct: 856 KVAYIHGRMTETQLENILIDFIDGEYDVLVTTTIIETGVDIPNVNTLFVDNADRKGL--- 912

Query: 668 KTSLIQTIGRAARNVNSKVILYA 690
            + L Q  GR  R   S  I YA
Sbjct: 913 -SQLYQLRGRVGR---SNRIAYA 931


>gi|153952805|ref|YP_001393570.1| hypothetical protein CKL_0152 [Clostridium kluyveri DSM 555]
 gi|146345686|gb|EDK32222.1| Mfd [Clostridium kluyveri DSM 555]
          Length = 1173

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 108/515 (20%), Positives = 223/515 (43%), Gaps = 56/515 (10%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           ++ GI  ++    + G++ S +++ +  V     +P +++  + + A +LY +   + P 
Sbjct: 19  IMAGIDRKKFPIAVFGLSESSRSYLIYAVYNQQDKPFLIITHSDVEARKLYEDLCFYLPQ 78

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
             V YF             P  +       +I+  +   R    R +L     I+++ V 
Sbjct: 79  --VYYF-------------PTKEVVFYNIDAISGDLRWERLKVIREMLNPGKKIIITCVE 123

Query: 280 CIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
            +  +   VE Y   I ++ +GD V+ K +   L++  Y+R ++   RG F + G  ++I
Sbjct: 124 SLASVYVPVELYKNYIFKISVGDKVDFKNISEKLIQCGYERMEMVERRGQFSIRGGIMDI 183

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           + S +    +RV +FG+++E I  F   + + I  +  I+I+A    +  R  +      
Sbjct: 184 Y-SPISQEPYRVELFGDEVESIRNFNLESQRSIEKMNNIEIFAAKEIIFDRERIEIGKSK 242

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRIT-YDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
           IKE+L   +IE  KE +  E     + IT  +LE L+ T + +SI+++  Y       E 
Sbjct: 243 IKEDL-ASIIEKLKENKNNEGMEKIKTITNKNLETLQETWTFESIDSFLPYFY-----EH 296

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS---CMDNRPLR 514
             +  +Y  ++  + VD+      ++  +Y           E G  LP     + +R   
Sbjct: 297 TSSFLDY-AKNYFVIVDDIKRCSGKLDSVYFEFLENYKNFLERGNVLPGQSKMLLDRSEL 355

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDVYD 573
            +E+N      I++ A   S            +I+ P  +V+   + + + + ++E + +
Sbjct: 356 IDEFN--HREIIILDAIAKS-----------TKILPPKLIVNFTQITLNNYQGKLELLIE 402

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           EI     +  +IL+   T+   E L + L +  I   Y           +++ +++ G+ 
Sbjct: 403 EIKHKKSKSFKILILSGTRARGERLVDTLRDNGIESSYR----------DVVNEIKPGEV 452

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            +  G  L  +G + PE  +  I  +DKE F ++K
Sbjct: 453 VITFGNQL--KGFEYPEIKISVI--SDKEVFGKAK 483



 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V   H +++  E   II D    K+D+LV   ++  G+DI     + I DADK G    
Sbjct: 864 KVAVAHGQMQERELEGIIMDFMQNKYDILVSTTIIETGMDIQNVNTMVIYDADKMGL--- 920

Query: 668 KTSLIQTIGRAAR 680
            + L Q  GR  R
Sbjct: 921 -SQLYQLRGRVGR 932


>gi|219853470|ref|YP_002470592.1| hypothetical protein CKR_0127 [Clostridium kluyveri NBRC 12016]
 gi|219567194|dbj|BAH05178.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1183

 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 108/515 (20%), Positives = 223/515 (43%), Gaps = 56/515 (10%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           ++ GI  ++    + G++ S +++ +  V     +P +++  + + A +LY +   + P 
Sbjct: 29  IMAGIDRKKFPIAVFGLSESSRSYLIYAVYNQQDKPFLIITHSDVEARKLYEDLCFYLPQ 88

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
             V YF             P  +       +I+  +   R    R +L     I+++ V 
Sbjct: 89  --VYYF-------------PTKEVVFYNIDAISGDLRWERLKVIREMLNPGKKIIITCVE 133

Query: 280 CIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
            +  +   VE Y   I ++ +GD V+ K +   L++  Y+R ++   RG F + G  ++I
Sbjct: 134 SLASVYVPVELYKNYIFKISVGDKVDFKNISEKLIQCGYERMEMVERRGQFSIRGGIMDI 193

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           + S +    +RV +FG+++E I  F   + + I  +  I+I+A    +  R  +      
Sbjct: 194 Y-SPISQEPYRVELFGDEVESIRNFNLESQRSIEKMNNIEIFAAKEIIFDRERIEIGKSK 252

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRIT-YDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
           IKE+L   +IE  KE +  E     + IT  +LE L+ T + +SI+++  Y       E 
Sbjct: 253 IKEDL-ASIIEKLKENKNNEGMEKIKTITNKNLETLQETWTFESIDSFLPYFY-----EH 306

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS---CMDNRPLR 514
             +  +Y  ++  + VD+      ++  +Y           E G  LP     + +R   
Sbjct: 307 TSSFLDY-AKNYFVIVDDIKRCSGKLDSVYFEFLENYKNFLERGNVLPGQSKMLLDRSEL 365

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDVYD 573
            +E+N      I++ A   S            +I+ P  +V+   + + + + ++E + +
Sbjct: 366 IDEFN--HREIIILDAIAKS-----------TKILPPKLIVNFTQITLNNYQGKLELLIE 412

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           EI     +  +IL+   T+   E L + L +  I   Y           +++ +++ G+ 
Sbjct: 413 EIKHKKSKSFKILILSGTRARGERLVDTLRDNGIESSYR----------DVVNEIKPGEV 462

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            +  G  L  +G + PE  +  I  +DKE F ++K
Sbjct: 463 VITFGNQL--KGFEYPEIKISVI--SDKEVFGKAK 493



 Score = 40.8 bits (94), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V   H +++  E   II D    K+D+LV   ++  G+DI     + I DADK G    
Sbjct: 874 KVAVAHGQMQERELEGIIMDFMQNKYDILVSTTIIETGMDIQNVNTMVIYDADKMGL--- 930

Query: 668 KTSLIQTIGRAAR 680
            + L Q  GR  R
Sbjct: 931 -SQLYQLRGRVGR 942


>gi|182420518|ref|ZP_02643226.2| transcription-repair coupling factor [Clostridium perfringens NCTC
           8239]
 gi|182380350|gb|EDT77829.1| transcription-repair coupling factor [Clostridium perfringens NCTC
           8239]
          Length = 1168

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 151/336 (44%), Gaps = 43/336 (12%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ    +  SG+ P  I                 G++ SGK++ +  + E   +P +V+ 
Sbjct: 16  FQKVKSFMESGNYPVMIN----------------GLSDSGKSYFINGIYEESDKPIVVVT 59

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            N I A  +Y +   + P+                 Y+P  +       +I+  +   R 
Sbjct: 60  HNDIEARNIYEDLSFYLPN---------------VYYLPSREIVFYNIDAISGDLRWARL 104

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
              + +L     I+V+S+       +  E Y   I+++K+GD V+ KE+   L++  Y+R
Sbjct: 105 KVIKEMLRSTKKIIVTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYER 164

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +    +G F + G  +++FP +  +  +R+ +FG++++ I  F   + + I  V+  +I
Sbjct: 165 LETVEGKGEFSLRGGILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEI 223

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE-AQRLEQRITYDLEMLETTGS 438
           +     +  + T+  A++ +++EL     + E +    E  +RL + I  ++E L+   S
Sbjct: 224 FPAKEVILSKETIEHAIEKMRKELS----DFENKVSDKEIKERLRKLIERNIESLQENWS 279

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
            ++I++Y  +   +     P TLF+Y+   + +  D
Sbjct: 280 FETIDSYLPFFFDK-----PATLFDYLNNYTFIIDD 310


>gi|170763931|ref|ZP_02635347.2| transcription-repair coupling factor [Clostridium perfringens B
           str. ATCC 3626]
 gi|170764087|ref|ZP_02631749.2| transcription-repair coupling factor [Clostridium perfringens E
           str. JGS1987]
 gi|170662722|gb|EDT15405.1| transcription-repair coupling factor [Clostridium perfringens E
           str. JGS1987]
 gi|170712080|gb|EDT24262.1| transcription-repair coupling factor [Clostridium perfringens B
           str. ATCC 3626]
          Length = 1168

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 151/336 (44%), Gaps = 43/336 (12%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ    +  SG+ P  I                 G++ SGK++ +  + E   +P +V+ 
Sbjct: 16  FQKVKSFMESGNYPVMIN----------------GLSDSGKSYFINGIYEESDKPIVVVT 59

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            N I A  +Y +   + P+                 Y+P  +       +I+  +   R 
Sbjct: 60  HNDIEARNIYEDLSFYLPN---------------VYYLPSREIVFYNIDAISGDLRWARL 104

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
              + +L     I+V+S+       +  E Y   I+++K+GD V+ KE+   L++  Y+R
Sbjct: 105 KVIKEMLRSTKKIIVTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYER 164

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +    +G F + G  +++FP +  +  +R+ +FG++++ I  F   + + I  V+  +I
Sbjct: 165 LETVEGKGEFSLRGGILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEI 223

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE-AQRLEQRITYDLEMLETTGS 438
           +     +  + T+  A++ +++EL     + E +    E  +RL + I  ++E L+   S
Sbjct: 224 FPAKEVILSKETIEHAIEKMRKELS----DFENKVSDKEIKERLRKLIERNIESLQENWS 279

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
            ++I++Y  +   +     P TLF+Y+   + +  D
Sbjct: 280 FETIDSYLPFFFDK-----PATLFDYLNNYTFIIDD 310


>gi|168213408|ref|ZP_02639033.1| transcription-repair coupling factor [Clostridium perfringens CPE
           str. F4969]
 gi|170715029|gb|EDT27211.1| transcription-repair coupling factor [Clostridium perfringens CPE
           str. F4969]
          Length = 1168

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 151/336 (44%), Gaps = 43/336 (12%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ    +  SG+ P  I                 G++ SGK++ +  + E   +P +V+ 
Sbjct: 16  FQKVKSFMESGNYPVMIN----------------GLSDSGKSYFINGIYEESDKPIVVVT 59

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            N I A  +Y +   + P+                 Y+P  +       +I+  +   R 
Sbjct: 60  HNDIEARNIYEDLSFYLPN---------------VYYLPSREIVFYNIDAISGDLRWARL 104

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
              + +L     I+V+S+       +  E Y   I+++K+GD V+ KE+   L++  Y+R
Sbjct: 105 KVIKEMLRSTKKIIVTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYER 164

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +    +G F + G  +++FP +  +  +R+ +FG++++ I  F   + + I  V+  +I
Sbjct: 165 LETVEGKGEFSLRGGILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEI 223

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE-AQRLEQRITYDLEMLETTGS 438
           +     +  + T+  A++ +++EL     + E +    E  +RL + I  ++E L+   S
Sbjct: 224 FPAKEVILSKETIEHAIEKMRKELS----DFENKVSDKEIKERLRKLIERNIESLQENWS 279

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
            ++I++Y  +   +     P TLF+Y+   + +  D
Sbjct: 280 FETIDSYLPFFFDK-----PATLFDYLNNYTFIIDD 310


>gi|110799729|ref|YP_697172.1| transcription-repair coupling factor [Clostridium perfringens ATCC
           13124]
 gi|110674376|gb|ABG83363.1| transcription-repair coupling factor [Clostridium perfringens ATCC
           13124]
          Length = 1162

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 151/336 (44%), Gaps = 43/336 (12%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ    +  SG+ P  I                 G++ SGK++ +  + E   +P +V+ 
Sbjct: 10  FQKVKSFMESGNYPVMIN----------------GLSDSGKSYFINGIYEESDKPIVVVT 53

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            N I A  +Y +   + P+                 Y+P  +       +I+  +   R 
Sbjct: 54  HNDIEARNIYEDLSFYLPN---------------VYYLPSREIVFYNIDAISGDLRWARL 98

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
              + +L     I+V+S+       +  E Y   I+++K+GD V+ KE+   L++  Y+R
Sbjct: 99  KVIKEMLRSTKKIIVTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYER 158

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +    +G F + G  +++FP +  +  +R+ +FG++++ I  F   + + I  V+  +I
Sbjct: 159 LETVEGKGEFSLRGGILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEI 217

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE-AQRLEQRITYDLEMLETTGS 438
           +     +  + T+  A++ +++EL     + E +    E  +RL + I  ++E L+   S
Sbjct: 218 FPAKEVILSKETIEHAIEKMRKELS----DFENKVSDKEIKERLRKLIERNIESLQENWS 273

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
            ++I++Y  +   +     P TLF+Y+   + +  D
Sbjct: 274 FETIDSYLPFFFDK-----PATLFDYLNNYTFIIDD 304


>gi|227891598|ref|ZP_04009403.1| transcription-repair coupling factor [Lactobacillus salivarius ATCC
           11741]
 gi|227866745|gb|EEJ74166.1| transcription-repair coupling factor [Lactobacillus salivarius ATCC
           11741]
          Length = 1174

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 120/251 (47%), Gaps = 17/251 (6%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
            +L G+ GS KT  +AK+++  + P +++  +   A QL S+ +N      +E F     
Sbjct: 26  HMLTGLVGSSKTLMIAKLLKDKKVPQLIVESDLYHAQQLQSDLENIIEDTRIELF----- 80

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVES 289
                   P  D  + + ++ + +    R SA  +L   N  IV+++V+ I   + SVE 
Sbjct: 81  --------PVEDMLVAEMATSSPEYRAQRVSALTALTSENPVIVITTVAGIRRFLPSVEY 132

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           + Q  +QL+IG  V+  EL   L +  Y R ++    G F + G  ++IFP    D  +R
Sbjct: 133 WKQHEIQLEIGKEVDPAELEKKLFEMGYIRSNMVNAPGDFAIRGSIVDIFPLD-ADNPYR 191

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           +  F  +I+ +  F     + I NV+ + I   + ++  +  L  A + IK+E   +  +
Sbjct: 192 IDFFDIEIDSMRTFDIANQRSIENVDQVTIIPATDFIASKEVLELASERIKKEYNKQFSK 251

Query: 410 LE--KEGRLLE 418
           L+  KE +L E
Sbjct: 252 LKNIKEEKLTE 262



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V Y+H  +   +   I+ D   G++DVLV   ++  G+DIP    + + +AD+ G    
Sbjct: 856 KVAYIHGRMTETQLENILIDFIDGEYDVLVTTTIIETGVDIPNVNTLFVDNADRMGL--- 912

Query: 668 KTSLIQTIGRAARNVNSKVILYA 690
            + L Q  GR  R   S  I YA
Sbjct: 913 -SQLYQLRGRVGR---SNRIAYA 931


>gi|90962332|ref|YP_536248.1| transcription-repair coupling factor [Lactobacillus salivarius
           UCC118]
 gi|90821526|gb|ABE00165.1| Transcription-repair coupling factor [Lactobacillus salivarius
           UCC118]
          Length = 1174

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 120/251 (47%), Gaps = 17/251 (6%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
            +L G+ GS KT  +AK+++  + P +++  +   A QL S+ +N      +E F     
Sbjct: 26  HMLTGLVGSSKTLMIAKLLKDKKVPQLIVESDLYHAQQLQSDLENIIEDTRIELF----- 80

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVES 289
                   P  D  + + ++ + +    R SA  +L   N  IV+++V+ I   + SVE 
Sbjct: 81  --------PVEDMLVAEMATSSPEYRAQRVSALTALTSENPVIVITTVAGIRRFLPSVEY 132

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           + Q  +QL+IG  V+  EL   L +  Y R ++    G F + G  ++IFP    D  +R
Sbjct: 133 WKQHEIQLEIGKEVDPAELEKKLFEMGYIRSNMVNAPGDFAIRGSIVDIFPLD-ADNPYR 191

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           +  F  +I+ +  F     + I NV+ + I   + ++  +  L  A + IK+E   +  +
Sbjct: 192 IDFFDIEIDSMRTFDIANQRSIENVDQVTIIPATDFIASKEVLELASERIKKEYNKQFSK 251

Query: 410 LE--KEGRLLE 418
           L+  KE +L E
Sbjct: 252 LKNIKEEKLTE 262



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V Y+H  +   +   I+ D   G++DVLV   ++  G+DIP    + + +AD+ G    
Sbjct: 856 KVAYIHGRMTETQLENILIDFIDGEYDVLVTTTIIETGVDIPNVNTLFVDNADRMGL--- 912

Query: 668 KTSLIQTIGRAARNVNSKVILYA 690
            + L Q  GR  R   S  I YA
Sbjct: 913 -SQLYQLRGRVGR---SNRIAYA 931


>gi|256003231|ref|ZP_05428223.1| transcription-repair coupling factor [Clostridium thermocellum DSM
           2360]
 gi|255992922|gb|EEU03012.1| transcription-repair coupling factor [Clostridium thermocellum DSM
           2360]
 gi|316939280|gb|ADU73314.1| transcription-repair coupling factor [Clostridium thermocellum DSM
           1313]
          Length = 1178

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 111/526 (21%), Positives = 220/526 (41%), Gaps = 62/526 (11%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            I +A N++ A +++ +   FF  +AV         + P   +   D   +   SI E+I
Sbjct: 59  GIYIAYNEMQARKMFEDVSFFFGKDAV---------FFPSKEIMLHDVEAKSYDSIYERI 109

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           + +     R + +    IV S+ +    +   + + + IV + +GD ++       LV  
Sbjct: 110 NAL----YRIVNDDYGFIVTSAEALCQKLIDRKLFKESIVNVALGDRIDLGLFTQKLVSI 165

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y+R      +  F V G  ++IFP +  D A R+ +F ++++ +  F  +T + + N+E
Sbjct: 166 GYERVTTVEGKSQFAVRGGIVDIFPVN-ADTAVRIELFDDEVDSVRSFDTMTQRSVENLE 224

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I      + P    ++ ++ I  +LK+++ ++E +      Q+LE +I  D+E    
Sbjct: 225 AVTILPARELIYPPGLRDSIVEKILNDLKIQIKKMEGKNNKSGIQKLEAKINSDIERFSQ 284

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
                 ++ Y  Y+      E P  + +YI  + L+FVDE      +I  +         
Sbjct: 285 EYYFAGMDRYIPYII-----EKPSAVIDYIDSEILVFVDEPKRFEQRIENLITESNEMCK 339

Query: 496 TLAEYGFRLPSCMDNRPLRFE---EWNCLR--PTTIVVSATPGSWELEQCQGIIVEQIIR 550
           +  E G  L    D   + F+    W+ ++    T+  +  P     E  +  IV ++  
Sbjct: 340 SFMENGQLLAGSFD---IFFDCNYLWDKVKKCKNTLYFTTLPSDDGQEGKRENIVSKL-- 394

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
                     + S +  +E + ++I+   + G R+++   TK   E L E L  ++I   
Sbjct: 395 ----------LNSYQGHLEILEEDISHWKKNGARVVILSGTKSRGEMLAETLRTKDIEAV 444

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+          E  RD++ G  +V++   +L  G + P  G V +  + KE F + K +
Sbjct: 445 YLE---------EPHRDIQPG--EVVITHGVLNRGFEYPGIGFVVV--SGKELFGQEKKT 491

Query: 671 LIQTIGRAAR-------NVNSKVILYADTITKSI---QLAIDETTR 706
                 +  +       NV   V+ Y   I K I   QL ++   +
Sbjct: 492 RRHKSAKGKKISVFTDLNVGDYVVHYVHGIGKYIGIEQLVVENVKK 537



 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H ++   E   I+     G++D+LV   ++  GLD+P    + + DADK G    
Sbjct: 868 RVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVEDADKMGL--- 924

Query: 668 KTSLIQTIGRAARN 681
              L Q  GR  R+
Sbjct: 925 -AQLYQLRGRVGRS 937


>gi|281418467|ref|ZP_06249486.1| transcription-repair coupling factor [Clostridium thermocellum
           JW20]
 gi|281407551|gb|EFB37810.1| transcription-repair coupling factor [Clostridium thermocellum
           JW20]
          Length = 1178

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 111/526 (21%), Positives = 220/526 (41%), Gaps = 62/526 (11%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            I +A N++ A +++ +   FF  +AV         + P   +   D   +   SI E+I
Sbjct: 59  GIYIAYNEMQARKMFEDVSFFFGKDAV---------FFPSKEIMLHDVEAKSYDSIYERI 109

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           + +     R + +    IV S+ +    +   + + + IV + +GD ++       LV  
Sbjct: 110 NAL----YRIVNDDYGFIVTSAEALCQKLIDRKLFKESIVNVALGDRIDLGLFTQKLVSI 165

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y+R      +  F V G  ++IFP +  D A R+ +F ++++ +  F  +T + + N+E
Sbjct: 166 GYERVTTVEGKSQFAVRGGIVDIFPVN-ADTAVRIELFDDEVDSVRSFDTMTQRSVENLE 224

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I      + P    ++ ++ I  +LK+++ ++E +      Q+LE +I  D+E    
Sbjct: 225 AVTILPARELIYPPGLRDSIVEKILNDLKIQIKKMEGKNNKSGIQKLEAKINSDIERFSQ 284

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
                 ++ Y  Y+      E P  + +YI  + L+FVDE      +I  +         
Sbjct: 285 EYYFAGMDRYIPYII-----EKPSAVIDYIDSEILVFVDEPKRFEQRIENLITESNEMCK 339

Query: 496 TLAEYGFRLPSCMDNRPLRFE---EWNCLR--PTTIVVSATPGSWELEQCQGIIVEQIIR 550
           +  E G  L    D   + F+    W+ ++    T+  +  P     E  +  IV ++  
Sbjct: 340 SFMENGQLLAGSFD---IFFDCNYLWDKVKKCKNTLYFTTLPSDDGQEGKRENIVSKL-- 394

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
                     + S +  +E + ++I+   + G R+++   TK   E L E L  ++I   
Sbjct: 395 ----------LNSYQGHLEILEEDISHWKKNGARVVILSGTKSRGEMLAETLRTKDIEAV 444

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+          E  RD++ G  +V++   +L  G + P  G V +  + KE F + K +
Sbjct: 445 YLE---------EPHRDIQPG--EVVITHGVLNRGFEYPGIGFVVV--SGKELFGQEKKT 491

Query: 671 LIQTIGRAAR-------NVNSKVILYADTITKSI---QLAIDETTR 706
                 +  +       NV   V+ Y   I K I   QL ++   +
Sbjct: 492 RRHKSAKGKKISVFTDLNVGDYVVHYVHGIGKYIGIEQLVVENVKK 537



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H ++   E   I+     G++D+LV   ++  GLD+P    + + DADK G    
Sbjct: 868 RVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVEDADKMGL--- 924

Query: 668 KTSLIQTIGRAARN 681
              L Q  GR  R+
Sbjct: 925 -AQLYQLRGRVGRS 937


>gi|182624347|ref|ZP_02952132.1| transcription-repair coupling factor [Clostridium perfringens D
           str. JGS1721]
 gi|177910565|gb|EDT72938.1| transcription-repair coupling factor [Clostridium perfringens D
           str. JGS1721]
          Length = 1168

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 151/336 (44%), Gaps = 43/336 (12%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ    +  SG+ P  I                 G++ SGK++ +  + E   +P +V+ 
Sbjct: 16  FQKVKSFMESGNYPVMIN----------------GLSDSGKSYFINGIYEESDKPIVVVT 59

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            N I A  +Y +   + P+                 Y+P  +       +I+  +   R 
Sbjct: 60  HNDIEARNIYEDLSFYLPN---------------VYYLPSREIVFYNIDAISGDLRWARL 104

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
              + +L     I+V+S+       +  E Y   I+++K+GD V+ KE+   L++  Y+R
Sbjct: 105 KVIKEMLRSTKKIIVTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYER 164

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +    +G F + G  +++FP +  +  +R+ +FG++++ I  F   + + I  V+  ++
Sbjct: 165 LETVEGKGEFSLRGGILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEV 223

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE-AQRLEQRITYDLEMLETTGS 438
           +     +  + T+  A++ +++EL     + E +    E  +RL + I  ++E L+   S
Sbjct: 224 FPAKEVILSKETIEHAVEKMRKELS----DFENKVSDKEIKERLRKLIERNIESLQENWS 279

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
            ++I++Y  +   +     P TLF+Y+   + +  D
Sbjct: 280 FETIDSYLPFFFDK-----PATLFDYLNNYTFIIDD 310


>gi|125975114|ref|YP_001039024.1| transcription-repair coupling factor [Clostridium thermocellum ATCC
           27405]
 gi|125715339|gb|ABN53831.1| transcription-repair coupling factor [Clostridium thermocellum ATCC
           27405]
          Length = 1178

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 111/526 (21%), Positives = 220/526 (41%), Gaps = 62/526 (11%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            I +A N++ A +++ +   FF  +AV         + P   +   D   +   SI E+I
Sbjct: 59  GIYIAYNEMQARKMFEDVSFFFGKDAV---------FFPSKEIMLHDVEAKSYDSIYERI 109

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           + +     R + +    IV S+ +    +   + + + IV + +GD ++       LV  
Sbjct: 110 NAL----YRIVNDDYGFIVTSAEALCQKLIDRKLFKESIVNVALGDRIDLGLFTQKLVSI 165

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y+R      +  F V G  ++IFP +  D A R+ +F ++++ +  F  +T + + N+E
Sbjct: 166 GYERVTTVEGKSQFAVRGGIVDIFPVN-ADTAVRIELFDDEVDSVRSFDTMTQRSVENLE 224

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I      + P    ++ M+ I  +LK+++ ++E +      Q+LE +I  D+E    
Sbjct: 225 AVTILPARELIYPPGLRDSIMEKILNDLKIQIKKMEGKNNKSGIQKLEAKINSDIERFSQ 284

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
                 ++ Y  Y+      E P  + +YI  + L+FVDE      +I  +         
Sbjct: 285 EYYFAGMDRYIPYII-----EKPSAVIDYIDSEILVFVDEPKRFEQRIENLITESNEMCK 339

Query: 496 TLAEYGFRLPSCMDNRPLRFE---EWNCLR--PTTIVVSATPGSWELEQCQGIIVEQIIR 550
           +  E G  L    D   + F+    W+ ++    T+  +  P     E+ +  IV ++  
Sbjct: 340 SFMENGQLLAGSFD---IFFDCNYLWDKVKKCKNTLYFTTLPSDDGQEEKRENIVSKL-- 394

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
                     + S +  +E + ++I+   +   R+++   TK   E L E L  ++I   
Sbjct: 395 ----------LNSYQGHLEILEEDISHWKKNRARVVILSGTKSRGEMLAETLRTKDIEAV 444

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+          E  RD++ G  +V++   +L  G + P  G V +  + KE F + K +
Sbjct: 445 YLE---------EPHRDIQPG--EVVITHGVLNRGFEYPGIGFVVV--SGKELFGQEKKT 491

Query: 671 LIQTIGRAAR-------NVNSKVILYADTITKSI---QLAIDETTR 706
                 +  +       NV   V+ Y   I K I   QL ++   +
Sbjct: 492 RRHKSAKGKKISVFTDLNVGDYVVHYVHGIGKYIGIEQLVVENVKK 537



 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H ++   E   I+     G++D+LV   ++  GLD+P    + + DADK G    
Sbjct: 868 RVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVEDADKMGL--- 924

Query: 668 KTSLIQTIGRAARN 681
              L Q  GR  R+
Sbjct: 925 -AQLYQLRGRVGRS 937


>gi|110803113|ref|YP_699740.1| transcription-repair coupling factor [Clostridium perfringens
           SM101]
 gi|110683614|gb|ABG86984.1| transcription-repair coupling factor [Clostridium perfringens
           SM101]
          Length = 1162

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/338 (20%), Positives = 152/338 (44%), Gaps = 47/338 (13%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ    +  SG+ P  I                 G++ SGK++ +  + E   +P +V+ 
Sbjct: 10  FQKVKSFMESGNYPVMIN----------------GLSDSGKSYFINGIYEESDKPIVVVT 53

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            N I A  +Y +   + P+                 Y+P  +       +I+  +   R 
Sbjct: 54  HNDIEARNIYEDLSFYLPN---------------VYYLPSREIVFYNIDAISGDLRWARL 98

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
              + +L     I+V+S+       +  E Y   I+++K+GD V+ KE+   L++  Y+R
Sbjct: 99  KVIKEMLRSTKKIIVTSIDAFVATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYER 158

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +    +G F + G  +++FP +  +  +R+ +FG++++ I  F   + + I  V+  +I
Sbjct: 159 LETVEGKGEFSLRGGILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEI 217

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ---RLEQRITYDLEMLETT 436
           +     +  + T+  A++ +++EL       + E ++ + +   +L + I  ++E L+  
Sbjct: 218 FPAKEVILSKETIEHAIEKMRKELS------DFENKVSDKEIKDKLRKLIEKNIESLQEN 271

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
            S ++I++Y  +   +     P TLF+Y+   + +  D
Sbjct: 272 WSFETIDSYLPFFFDK-----PATLFDYLNNYTFIIDD 304


>gi|300857300|ref|YP_003782284.1| putative transcription-repair coupling factor [Clostridium
           ljungdahlii DSM 13528]
 gi|300437415|gb|ADK17182.1| predicted transcription-repair coupling factor [Clostridium
           ljungdahlii DSM 13528]
          Length = 1173

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 96/520 (18%), Positives = 228/520 (43%), Gaps = 66/520 (12%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           ++ GI  ++    + G++ S K++ +  V   + +P +++  + + A +LY +   +   
Sbjct: 19  IIDGISKKKFPIGVFGLSESAKSYLIYGVYNEIDKPFLIVTHSDVEARKLYEDLSLYLAE 78

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
             V YF             P  +       +I+  +   R    R +++    I+++   
Sbjct: 79  --VYYF-------------PTKEMVFYNIDAISGDLRWERLKVIRKMIDTGRKIIIT--- 120

Query: 280 CIYGIGS----VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           C+  + S    V  Y   I+ + +G+++  K++   LV+  Y++ +I   +G F + GD 
Sbjct: 121 CVESLASAYIPVGLYENYIINISVGEALNLKDISEKLVQSGYEKNEIVDSKGQFSIRGDI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++++ S +   A+R+ +FG+++E I      + + I  +++I+I+     +  +  +   
Sbjct: 181 MDVY-SPIAAEAYRIELFGDEVESIRTLNLESQRSIDKLDSIEIFPAKEIILDKDKIQKG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
            K I+++  +   +LEK        R+++    +LE LE   S ++I+++  Y   +   
Sbjct: 240 RKSIEDDAALVEKKLEKSKNKEALDRIDELTKKNLESLEENWSFENIDSFLPYFYDK--- 296

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +  +Y  +D  + +D+      ++  +Y         L E G  LP          
Sbjct: 297 --PASFLDY-AKDYFVVMDDVQRCSGKLDSVYFEFEENYKNLLERGNILP---------- 343

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-------VEIRSARTQV 568
                 + + ++ + +    EL+  + + ++ I + + ++ P        + + S + Q+
Sbjct: 344 ------KQSKMLCAKSDLFEELKNKEIMTLDAIAKSSKVIQPKTITNFSQITLNSYQGQI 397

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + + ++I     +G +IL+   T+   E L + L E+ I   Y           ++I ++
Sbjct: 398 DLLIEDIKDKKSRGYKILILSGTRPRGERLVDTLREKGIESSYR----------DVIHEI 447

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + G+  +  G  L  +G + P+  L  I  +DKE F  +K
Sbjct: 448 KSGEVVITFGSQL--KGFEYPDFKLGVI--SDKEVFGEAK 483



 Score = 37.7 bits (86), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           K MA  + + + E  + V   H +++  E   II D    +++VLV   ++  G+DI   
Sbjct: 850 KEMASYIAKLIPEAKVAV--AHGQMQERELENIIVDFMKNEYNVLVATTIIETGMDIQNV 907

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             + I DADK G     + L Q  GR  R
Sbjct: 908 NTMIIYDADKMGL----SQLYQLRGRVGR 932


>gi|300214982|gb|ADJ79398.1| Transcription-repair coupling factor [Lactobacillus salivarius CECT
           5713]
          Length = 251

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 15/234 (6%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
            +L G+ GS KT  +AK+++  + P +++  +   A QL S+ +N      +E F     
Sbjct: 26  HMLTGLVGSSKTLMIAKLLKDKKVPQLIVESDLYHAQQLQSDLENIIEDTRIELF----- 80

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVES 289
                   P  D  + + ++ + +    R SA  +L   N  IV+++V+ I   + SVE 
Sbjct: 81  --------PVEDMLVAEMATSSPEYRAQRVSALTALTSENPVIVITTVAGIRRFLPSVEY 132

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           + Q  +QL+IG  V   EL   L +  Y R ++    G F + G  ++IFP    D  +R
Sbjct: 133 WKQHEIQLEIGKEVNPAELEKKLFEMGYIRSNMVNAPGDFAIRGSIVDIFPLD-ADNPYR 191

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           +  F  +I+ +  F     + I NV+ + I   + ++  +  L  A K IK+ +
Sbjct: 192 IDFFDIEIDSMRTFDIANQRSIENVDQVTIIPATDFIASKEVLELASKKIKKNI 245


>gi|187777479|ref|ZP_02993952.1| hypothetical protein CLOSPO_01047 [Clostridium sporogenes ATCC
           15579]
 gi|187774407|gb|EDU38209.1| hypothetical protein CLOSPO_01047 [Clostridium sporogenes ATCC
           15579]
          Length = 1172

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 146/335 (43%), Gaps = 32/335 (9%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G+  SGK + ++ +   + +  ++   + + A ++Y +   +              YY P
Sbjct: 38  GLADSGKNYFISSIFANVDKSLVIFTHSDVEARRIYEDLSLYTTEV----------YYLP 87

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV----ESY 290
              V   + Y     +I+  +   R      +L     I+V+   CI  +G+     E Y
Sbjct: 88  TKEVVFYNIY-----AISGDLRWERLKVINEVLSTKKKIIVT---CIESLGATYIPKELY 139

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            +   ++ +GD +E K L   LVK  Y+R DI   +G F V G  I+I+P  +    +R+
Sbjct: 140 IKYTFKMSVGDIIETKSLEEKLVKSGYERVDIVENKGEFSVRGGIIDIYPP-ISSEPYRL 198

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             FG++++ I  F   + + I  V +I I+     +     +N  +K IK +L   +  L
Sbjct: 199 EFFGDEVDSIRNFNVNSQRSIEKVNSISIFPAKEIILEEENINLGLKNIKADLDKLVGNL 258

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            K+    + ++++  I  +LE L  + S ++I+ +  Y   +       +L +YI EDS 
Sbjct: 259 SKKE---DKEKIQSIINSNLEQLNESWSFENIDTFLPYFYTKT-----NSLLDYI-EDSF 309

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505
           + +D+    + ++   Y           E G+ LP
Sbjct: 310 IVIDDVKRCLGKLDSTYLEFNEDYDKFLEKGYILP 344



 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV+  H ++K  E   ++ D    KFD+LV   ++  G+DI     + I DADK G    
Sbjct: 865 RVQIAHGQMKEKELENVVLDFTENKFDILVATTIIETGMDIKNVNTMIIYDADKMGL--- 921

Query: 668 KTSLIQTIGRAAR 680
            + L Q  GR  R
Sbjct: 922 -SQLYQLRGRVGR 933


>gi|89100521|ref|ZP_01173382.1| transcription-repair coupling factor [Bacillus sp. NRRL B-14911]
 gi|89084787|gb|EAR63927.1| transcription-repair coupling factor [Bacillus sp. NRRL B-14911]
          Length = 1179

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 146/333 (43%), Gaps = 49/333 (14%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G++   K QL+ G+TGS +T  +A + E  ++P +V+  N + A +LY +  N 
Sbjct: 14  IKTVITGVNGGLKEQLVAGLTGSARTLFLASIYEQTKKPMLVVTHNLLQAQKLYDDIVNL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + V        Y  P   +  ++  I       ++ID + H +      +   IV+ 
Sbjct: 74  IGEDDV--------YLYPANELIASELSIASPELRAQRIDALNHWSG-----KGTGIVII 120

Query: 277 SVSCIYGI---GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
            ++ +  +    S+    Q+I  LK+GD +E +E L   VK  Y R D+    G F V G
Sbjct: 121 PMAGMRKVLPPPSLWKKRQLI--LKLGDDIEIEEQLLEFVKMGYSRTDMVSSPGEFSVRG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFY---PLTGQKIRNVE----TIKIYANSH-- 384
             ++I+P    D   R+ +F  +I+ I  F      + +K++ V     T   + + H  
Sbjct: 179 GIMDIYPLTEAD-PIRIELFDTEIDSIRSFSLEDQRSKEKLKQVHIGPATENPFEDEHYD 237

Query: 385 --YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
             Y      L+ ++K +K+E    L              L Q I Y+LE L      + +
Sbjct: 238 RVYEKLEKGLSASLKKLKDEKAKEL--------------LAQNIGYELEQLRNRQRPEQM 283

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
             Y  Y    N      +L +Y+P+D L+F+DE
Sbjct: 284 FKYLSYAYESN-----NSLLDYLPQDGLIFIDE 311


>gi|225181416|ref|ZP_03734859.1| transcription-repair coupling factor [Dethiobacter alkaliphilus AHT
           1]
 gi|225167814|gb|EEG76622.1| transcription-repair coupling factor [Dethiobacter alkaliphilus AHT
           1]
          Length = 1177

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 141/318 (44%), Gaps = 21/318 (6%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           LL+G+  + + QL+ G+  S +T  MA +     RP +++ P++  A ++Y +  + F  
Sbjct: 18  LLEGLKVKSRYQLVYGLDESARTMLMAALRLHTDRPVLIVTPDQTHAGRIYEDMLSVFKD 77

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
             V  F      Y    +    D   +            R +A + L   ++ +VV++VS
Sbjct: 78  EDVYLFPGKELLYYSNLFSESGDAAAQ------------RIAAMKRLARGDNIVVVATVS 125

Query: 280 C-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
             +  +     + +    L+  D +   ELL  LV   Y+R ++  ++G   V G  ++I
Sbjct: 126 AMVTKMPPFAPWQEACFTLRPDDDIPIDELLGKLVDGGYERVEMVDVQGQVSVRGGIVDI 185

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           +P+  E   +R+  FG  ++ I  F P + +    V+ +++      V        A+  
Sbjct: 186 YPAG-EPYPYRIEFFGETVDSIRRFDPESQRSRERVDLLELTPARELVVTAAERKNALSA 244

Query: 399 IKEELKMRLIELEKEGRLLEAQ-RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
           + +E   +L E   +G   EA+ +L++R+   +E +        +E Y  Y       + 
Sbjct: 245 LAKE-DAKLSEQLAKGVRTEAEGKLQERLAEHMEKIREEVYFPGMEQYLLYFY-----DQ 298

Query: 458 PPTLFEYIPEDSLLFVDE 475
              + +Y P+++LLF+DE
Sbjct: 299 AAKITDYFPDNTLLFIDE 316



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 8/90 (8%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGLDIPEC 651
           R A  L E + E  +R+   H ++   +R+E ++     G++DVL+   ++  GLDIP  
Sbjct: 851 RWAAKLQELMPE--VRLAVAHGQMPE-DRLEKVMMGFLEGEYDVLLSTTIVEAGLDIPNV 907

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I DADK G       L Q  GR  R+
Sbjct: 908 NTIIIQDADKFGL----AQLYQLRGRVGRS 933


>gi|58699570|ref|ZP_00374278.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58533914|gb|EAL58205.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 130

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 72/119 (60%), Gaps = 17/119 (14%)

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARN   +VILYAD IT S+  A+ ET RRR+KQ EHN  HNI P+++ + 
Sbjct: 24  TSLIQTIGRAARNAEGRVILYADKITGSLDRALRETERRRKKQEEHNILHNIIPKTIIKP 83

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           I   +                 Q+ ++++ K   +   LRKQM   A+NL FEEAARI+
Sbjct: 84  ISNTL-----------------QERAIAEPKVNTNKDDLRKQMIEHAENLEFEEAARIK 125


>gi|28209962|ref|NP_780906.1| transcription-repair coupling factor [Clostridium tetani E88]
 gi|28202397|gb|AAO34843.1| transcription-repair coupling factor [Clostridium tetani E88]
          Length = 1030

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 126/278 (45%), Gaps = 17/278 (6%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           ++G+  S K++ +  V + + +P +++  + I A  +Y +   FF    V YF       
Sbjct: 36  IIGLEDSSKSYLIKGVYDEIDKPLLILTHSDIEAKNIYEDL--FFYEANVHYF------- 86

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG-SVESYS 291
                 P  +       +I+  +   R    + +LE    I+V+S+  I  I   +  Y 
Sbjct: 87  ------PSKEVVFYNVDAISGDLRWERLKIIKHILEPGKKIIVTSIESIAPICIPLNLYK 140

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           +   +  IGD V+ K+L   L+K  Y R D+   +  F + G  ++IFP    +  +R+ 
Sbjct: 141 EYFFKFSIGDVVDYKDLSEKLLKSGYDRVDLVYNKAQFSIRGGILDIFPPTSSE-PYRIE 199

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            F N+I+ I  F   + + I  V+ I+++     +  +  +++A + I  +LK     L+
Sbjct: 200 FFDNEIDSIRNFNTESQRSIEKVDCIEVFPAKEIILNKENIDSACEKIMMDLKKVRNNLD 259

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
                    +L+  I  ++E L+ T   ++I++Y  YL
Sbjct: 260 SLNNKESFDKLKNTIDKNIESLKETWGFETIDSYLPYL 297


>gi|229542275|ref|ZP_04431335.1| transcription-repair coupling factor [Bacillus coagulans 36D1]
 gi|229326695|gb|EEN92370.1| transcription-repair coupling factor [Bacillus coagulans 36D1]
          Length = 1179

 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 143/317 (45%), Gaps = 23/317 (7%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           ++ G  +  K QL+ G++GS ++  +A V +  ++PAIV+  N + A +LY +   F   
Sbjct: 17  VISGTTAGLKEQLVSGLSGSARSAFIASVYQKTEQPAIVLTYNLLQAQKLYDDLLQFVDE 76

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           +A+  +             P  +    +    + ++   R     +LL   +C++V  ++
Sbjct: 77  SALFLY-------------PANELIAAELGVASPELMAQRIEVLNALLSGKNCLIVVPMA 123

Query: 280 CIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
            +  I   ++ + +  + ++ G  +E   +L  LV+  Y R D+    G F V G  ++I
Sbjct: 124 GLRKILPPKTVWEKYQLHVETGKEIELDHVLEMLVEMGYTRSDMVDSPGDFSVRGGILDI 183

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           +P   ED   R+ +F  +++ I  F     +    +  + I   + Y   R +L  A + 
Sbjct: 184 YPLTEEDPV-RIELFDTEVDSIRTFSADDQRSRDKLSAVSIGPATEYPADRLSLMKAAET 242

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           +KE L   L +++ +      Q L Q I++D+E L+       I  Y   L      + P
Sbjct: 243 VKEGLSKTLAKIKDDQV---KQLLAQNISFDIEKLKNGEKPDQIFKYLSILY-----DQP 294

Query: 459 PTLFEYIPEDSLLFVDE 475
            +L +Y+    +LF+DE
Sbjct: 295 ASLLDYVETAGILFLDE 311



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H  +   +   +I     G++DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 856 DARVAYAHGRMTESQLESVIFGFLEGEYDVLVTTTIIETGVDIPNVNTLIVNDADRMGL- 914

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 915 ---SQLYQLRGRVGRS 927


>gi|167036600|ref|YP_001664178.1| transcription-repair coupling factor [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115027|ref|YP_004185186.1| transcription-repair coupling factor [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855434|gb|ABY93842.1| transcription-repair coupling factor [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928118|gb|ADV78803.1| transcription-repair coupling factor [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 1165

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 148/314 (47%), Gaps = 22/314 (7%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +  R+   L  G+T S K      ++    +  +V+AP+++ A ++Y +  +F   NA  
Sbjct: 19  LQQRKGPVLAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEARKIYEDLYSFNFGNA-- 76

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
                       +  P+ +    K  + ++++   R    + L E +   VV+S+    G
Sbjct: 77  ------------SLFPKREALFYKIDAASQEVVSQRLQVIKKLSEESPHAVVTSIDAAVG 124

Query: 284 -IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +  ++ + +     K+GD+V  +E++ SLV   Y+R  I   +G F V G  I++F S 
Sbjct: 125 KLIPMDLFKKYQFVFKLGDTVNLEEVIKSLVTMGYERVQIVEGKGQFSVRGGIIDVF-SP 183

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E+  +R+ +F ++I+ I  F  +T + + N++ I I+  + ++     +   +  +   
Sbjct: 184 TEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEAEHIKKGISAVSNY 243

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
           L   L +++K    + A++L+Q+    +E +  +   ++I     Y       +   ++ 
Sbjct: 244 LNSYLSKIKKPKSGI-AEKLQQKFEEIMEEITESKRVENIYELIDYFY-----DDVYSIV 297

Query: 463 EYIPEDSLLFVDES 476
           +Y+ ED+++ +DES
Sbjct: 298 DYMGEDAVIILDES 311



 Score = 44.3 bits (103), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H +++  +  +++ D   G++DVLV   ++  GLDIP    + + DADK G    
Sbjct: 861 RVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLGL--- 917

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 918 -SQLYQLRGRVGRS 930


>gi|167039252|ref|YP_001662237.1| transcription-repair coupling factor [Thermoanaerobacter sp. X514]
 gi|300913892|ref|ZP_07131209.1| transcription-repair coupling factor [Thermoanaerobacter sp. X561]
 gi|307725423|ref|YP_003905174.1| transcription-repair coupling factor [Thermoanaerobacter sp. X513]
 gi|166853492|gb|ABY91901.1| transcription-repair coupling factor [Thermoanaerobacter sp. X514]
 gi|300890577|gb|EFK85722.1| transcription-repair coupling factor [Thermoanaerobacter sp. X561]
 gi|307582484|gb|ADN55883.1| transcription-repair coupling factor [Thermoanaerobacter sp. X513]
          Length = 1165

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 148/314 (47%), Gaps = 22/314 (7%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +  R+   L  G+T S K      ++    +  +V+AP+++ A ++Y +  +F   NA  
Sbjct: 19  LQQRKGPVLAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEARKIYEDLYSFNFGNA-- 76

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
                       +  P+ +    K  + ++++   R    + L E +   VV+S+    G
Sbjct: 77  ------------SLFPKREALFYKIDAASQEVVSQRLQVIKKLSEESPHAVVTSIDAAVG 124

Query: 284 -IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +  ++ + +     K+GD+V  +E++ SLV   Y+R  I   +G F V G  I++F S 
Sbjct: 125 KLIPMDLFKKYQFVFKLGDTVNLEEVIKSLVTMGYERVQIVEGKGQFSVRGGIIDVF-SP 183

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E+  +R+ +F ++I+ I  F  +T + + N++ I I+  + ++     +   +  +   
Sbjct: 184 TEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEAEHIKKGISAVSNY 243

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
           L   L +++K    + A++L+Q+    +E +  +   ++I     Y       +   ++ 
Sbjct: 244 LNSYLSKIKKPKSGI-AEKLQQKFEEIMEEITESKRVENIYELIDYFY-----DDVYSIV 297

Query: 463 EYIPEDSLLFVDES 476
           +Y+ ED+++ +DES
Sbjct: 298 DYMGEDAVIILDES 311



 Score = 44.3 bits (103), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H +++  +  +++ D   G++DVLV   ++  GLDIP    + + DADK G    
Sbjct: 861 RVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLGL--- 917

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 918 -SQLYQLRGRVGRS 930


>gi|295694758|ref|YP_003587996.1| transcription-repair coupling factor [Bacillus tusciae DSM 2912]
 gi|295410360|gb|ADG04852.1| transcription-repair coupling factor [Bacillus tusciae DSM 2912]
          Length = 1174

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 136/311 (43%), Gaps = 21/311 (6%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           L++G+  R + Q + G++G+     MA +     RP +V+  N   A QLY +   F P 
Sbjct: 17  LVEGLDERVEEQWVTGLSGTAAHVMMAALRRETGRPMLVVTHNLQEAQQLYDDCLEFLPS 76

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           + V  F        PE      D          E++D +    TR     N  ++  + +
Sbjct: 77  DRVLLF--------PEREAALLDVAAYSPELAAERMDVL----TRLAKGENILLITPARA 124

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
               +  +E +   ++ LK G+ +++ E +  L++  Y+  D    RG F V G  +++F
Sbjct: 125 VDQPLPDLEIFRSFLLSLKTGEVLKRDEWVDRLLQMGYEAADRVEARGQFAVRGGIVDVF 184

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P   ++ A+R+  F ++I+ I  F P T + +  V   +I  N+  + P+  +  A + +
Sbjct: 185 PL-TQERAYRIEFFDDEIDAIRVFDPETQRSVDQVPACEIGPNTEILAPKERIQAAARVV 243

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
           + + + +  +   EG     +R+++ I  D+  +E       +  Y   L        P 
Sbjct: 244 RSQWERQREKFADEG---HRERVDRYIGEDVRRMEAGHPFTGLLRYIHLLYPH-----PG 295

Query: 460 TLFEYIPEDSL 470
            L  ++P ++L
Sbjct: 296 GLLTWLPAEAL 306


>gi|289644104|ref|ZP_06476199.1| Helicase subunit of the DNA excision repair complex-like protein
           [Frankia symbiont of Datisca glomerata]
 gi|289506073|gb|EFD27077.1| Helicase subunit of the DNA excision repair complex-like protein
           [Frankia symbiont of Datisca glomerata]
          Length = 87

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/72 (54%), Positives = 53/72 (73%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
           NN ++    FQ+ +D+ PSGDQPAAIA+L + I + EK  +LLG TG+GK+ T A +IE 
Sbjct: 16  NNITRSTAPFQVVSDFEPSGDQPAAIAELARRIRAGEKDLVLLGATGTGKSATTAWLIEQ 75

Query: 192 MQRPAIVMAPNK 203
           +QRP +VMAPNK
Sbjct: 76  VQRPTLVMAPNK 87


>gi|220932952|ref|YP_002509860.1| transcription-repair coupling factor [Halothermothrix orenii H 168]
 gi|219994262|gb|ACL70865.1| transcription-repair coupling factor [Halothermothrix orenii H 168]
          Length = 1170

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 101/472 (21%), Positives = 205/472 (43%), Gaps = 37/472 (7%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +++KGI+  + +  + G+ G+   F    +++ + +  +++  + +   + Y +     P
Sbjct: 15  KIMKGINQGQNL-FIEGMPGNRFAFITGNILQKIDKTVLMVTYDTVHLNRYYEDLIRMMP 73

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
              V  +        PE+ V   +  +     + E   R+R   +    ++   ++ ++ 
Sbjct: 74  EEKVLLY--------PESEVLPHEQIV---PDLAETAQRIRVLQSVITDKKPAVLLTTAT 122

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           + +  +  V ++ + I  L++G  ++  +    L    Y R ++    G F + G  I+I
Sbjct: 123 ALLRKMIPVSTFKKYIFSLQVGQEIDLNKFTEKLRISGYNRVEMVENPGEFSIRGGIIDI 182

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY-ANSHYVTPRPTLNTAMK 397
           FP  + +  +R+ +FG++I+ I EF P T +  R++E + I  A    V+PR  +  A+ 
Sbjct: 183 FPLSV-NKPFRIELFGDEIDTIREFEPATQRSRRSLEKVFISPAREIIVSPR-QIKKAIP 240

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML----ETTGSCQSIENYSRYLTGRN 453
            IK +    +  L +     E   L ++    LE L    +  GS Q +  Y   L    
Sbjct: 241 AIKSDFNDTINTLYENNYKEEGDYLREKRDESLEKLAERDDFPGSEQFLPYYYPELH--- 297

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
                 TL +Y+P+DS++F D++  T  +I G        +ATL E G  LP+   N   
Sbjct: 298 ------TLIDYLPDDSVIFFDQAEKTWQRIKGFIDELQETQATLLEQGSVLPTYHKNFLS 351

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
           R    + L+    V S+T  + EL   +    E++   T  V+P         +++   +
Sbjct: 352 REALLDKLKDFNFVYSSTSINEELSWVKDF--EKVSFTTRSVEP------YHGKLDLFAE 403

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            +      G R+ +T+ +   A  +  YL E  + V +   E  + ERI ++
Sbjct: 404 RVRELVDTGYRVFVTLNSSNKARRVVNYLKENEMAVAFRREEF-SRERIIVM 454


>gi|218290671|ref|ZP_03494762.1| transcription-repair coupling factor [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239336|gb|EED06534.1| transcription-repair coupling factor [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 1183

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 143/328 (43%), Gaps = 29/328 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR----PAIVMAPNKILAAQLY 210
            A++ L  G+  R+   L+ GVTG+G+   MA +     R      IV+      A  ++
Sbjct: 12  GALSSLADGMGPRKNDMLITGVTGAGRQLVMAALYHLRNRRLPESMIVVTHTASHAQTIW 71

Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI-DRMRHSATRSLLER 269
            + K + P   V        Y  PE    R +  ++  +S ++ + DR+      +L + 
Sbjct: 72  EDLKEYLPDARV--------YLYPE----RDNALVDYLASSSDVLADRLH--VLEALAQE 117

Query: 270 NDCIVVSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
              +VV+++   +   + +S +   +V L +G+S    ++++ LV+  Y+R ++   RG 
Sbjct: 118 GPVVVVTTLLAAWQPVTKKSHFLHSLVNLAVGESKPIDDVVAQLVRGGYERVNLVESRGQ 177

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           F V G  +++FP    D+ +R+  F  DI+ I  F P T +     + +        + P
Sbjct: 178 FSVRGGILDVFPMG-HDLPYRIEWFDTDIDSIRTFDPATQRSQDKRDRVSFGPAFDLMLP 236

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
           +P  +     ++  L+ RL  +          RLEQ I+ D+  L        +  Y   
Sbjct: 237 QPVADKVADELEARLEARLKTVTDAAL---RDRLEQSISADIRKLREGQPFAGVARYQLL 293

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDES 476
                  E   TLF+++P+ + +  DE+
Sbjct: 294 YP-----EHADTLFDHVPQPTFVCFDET 316



 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 23/139 (16%)

Query: 553 GLVDPPVEIRSART-QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           GLV   +E   AR  QV  VY+++                 RMAE +   +   + RV  
Sbjct: 822 GLVKEAIERELARGGQVYFVYNDVQT-------------IHRMAERVQSLV--PDARVSV 866

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
            H ++   E   ++ D   G++DVLV   ++  GLDIP    + + DADK G     + L
Sbjct: 867 AHGQMAEAELERVMLDFLEGEYDVLVTTTIIETGLDIPNVNTLIVYDADKFGL----SQL 922

Query: 672 IQTIGRAARNVNSKVILYA 690
            Q  GR  R   S  I YA
Sbjct: 923 YQLRGRVGR---SNRIAYA 938


>gi|187932793|ref|YP_001884406.1| transcription-repair coupling factor [Clostridium botulinum B str.
           Eklund 17B]
 gi|187720946|gb|ACD22167.1| transcription-repair coupling factor [Clostridium botulinum B str.
           Eklund 17B]
          Length = 1167

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 104/517 (20%), Positives = 227/517 (43%), Gaps = 64/517 (12%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + ++LK I+ +     + G++ SG+++ +  + E +++  +++  + + A  LY +    
Sbjct: 16  LQKILKSINEKTYPVGIYGLSDSGRSYMIDGIFENIEKSIVIVTQSDMEAKNLYEDL--I 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVV 275
              N V YF             P  +T      +I+  +   R +    +L  +N  IV+
Sbjct: 74  LYTNEVYYF-------------PVKETVFYNIDAISGDLRWARLNVINEILNNKNKKIVI 120

Query: 276 SSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +SV C     +    + +  + +K G  +   E+ S L++  Y+R +I   +G F + G 
Sbjct: 121 TSVDCFMATYAPHKLFVKYSMTIKQGAEINFNEMSSKLIESGYERVEIVESKGQFSIRGG 180

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++IFP+      +RV +FG+++E I  F   + + I  V++ K++     +  + ++  
Sbjct: 181 ILDIFPT-CSTYPYRVELFGDEVESIRTFNSESQRSIDKVKSFKVFPAKEIIVSQESMTK 239

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A + I  E K   ++ +++ R+   ++LE+ +  ++E LE   + ++I++Y  Y      
Sbjct: 240 AKESILNEFKEISLDNKEKERI---EKLEKVVKSNIESLEENLTFETIDSYLPYFY---- 292

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS-----CMD 509
            E   + F+Y  ++ L  +++      ++   Y        +  E G  LP        +
Sbjct: 293 -EEVESFFDYF-KNYLFIMNDVKRCKGKLESSYLEFAENFTSFLERGDILPGQEKLLIKE 350

Query: 510 NRPL-RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQ 567
           +  L +FEE N L   T+  +                E+ +RP T +      + + + Q
Sbjct: 351 HDTLDKFEESNILFFETLNNT----------------EKFLRPFTNIELKQTTLSNYQGQ 394

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           ++ + ++I     +G + ++   TK   E L + L +R +   Y  +          I +
Sbjct: 395 LDILIEDILDKKSKGYKTVILSGTKVRGERLVDTLRDRGVESSYKDN----------IEE 444

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           ++ G+  +  G  L  +G + PE  +  I  +DKE F
Sbjct: 445 IQFGEVIITCGNQL--KGFEYPEYKVCVI--SDKEVF 477


>gi|194467674|ref|ZP_03073661.1| transcription-repair coupling factor [Lactobacillus reuteri 100-23]
 gi|194454710|gb|EDX43607.1| transcription-repair coupling factor [Lactobacillus reuteri 100-23]
          Length = 1179

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 141/307 (45%), Gaps = 23/307 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS +T  ++ + +  Q+P +V+        +L S+ +N  P N V      Y 
Sbjct: 27  QLITGISGSARTELLSALSKEGQQPILVVTDTISHMQELASDLENLLPANHV------YQ 80

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVES 289
           +   E       T     SS N ++ R+   A  +L+ R   +VV+S + +   I S E 
Sbjct: 81  FPVEEVLAAEVAT-----SSPNYRLQRVL--ALNALINREPAVVVASAAGLRRNIISPEY 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           ++Q  +++K G  V+  ++   L    Y+ Q + +  G F + G  I+I+  +  D   R
Sbjct: 134 FAQSSLKIKTGGEVDPAKIRQQLSAMGYQYQKMVLRPGDFAIRGSIIDIYALN-TDNPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           + +F  +++ +  F   T + I NVE ++I   + ++ P P  +   + +  E K  + E
Sbjct: 193 IDLFDTEVDSLRYFDASTQRSIDNVEEVQILPATDFIIPSPEFSRVAEALDAEYKKVVKE 252

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP-TLFEYIPED 468
           L  +        ++Q++    E L      Q + N    L   N   P   +LF+Y+P+D
Sbjct: 253 LSADD-----ADIKQQVANRFEPLLNALKNQHLPN--ELLEFSNLVYPAKHSLFDYLPDD 305

Query: 469 SLLFVDE 475
             ++ D+
Sbjct: 306 GTIYFDD 312


>gi|289579379|ref|YP_003478006.1| transcription-repair coupling factor [Thermoanaerobacter italicus
           Ab9]
 gi|289529092|gb|ADD03444.1| transcription-repair coupling factor [Thermoanaerobacter italicus
           Ab9]
          Length = 1163

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 144/309 (46%), Gaps = 28/309 (9%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           L  G+T S K      ++    +  +V+AP+ I A ++Y +  +F   NA          
Sbjct: 27  LAYGLTDSQKAHVAHYIMSKFNKKVLVIAPDDIEARKIYEDLYSFSFGNA---------- 76

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG----IGSV 287
               +  P+ +    K  + ++++   R    + L       VV+S+    G    +   
Sbjct: 77  ----SLFPKREALFYKIDAASQEMVSQRLRVIKKLTRETPHAVVTSIDAAIGKLIPMNLF 132

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           E Y QM    KIGD V  +E++ + V   Y+R  I   +G F V G  I++F S +E+  
Sbjct: 133 EKY-QMF--FKIGDIVNLQEVIKNFVAMGYERVQIVEGKGQFSVRGGIIDVF-SPIEEYP 188

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
           +R+ +F ++I+ I  F  +T + + N++ I I+  + ++     +   +  + + L   L
Sbjct: 189 YRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEEKHIKKGISAVSKSLNSYL 248

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
           ++++K    + A++L+Q+     E++E     + +EN    +      +   ++ +Y+ E
Sbjct: 249 LKIKKSKSGI-AEKLQQKFE---EIMEEITEAKRVENIHELIDYFY--DEVYSIVDYVGE 302

Query: 468 DSLLFVDES 476
           ++++ +DES
Sbjct: 303 EAVIILDES 311



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H +++  +  +++ D   G++DVLV   ++  GLDIP    + + DADK G    
Sbjct: 861 RVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLGL--- 917

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 918 -SQLYQLRGRVGRS 930


>gi|150014978|ref|YP_001307232.1| transcription-repair coupling factor [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901443|gb|ABR32276.1| transcription-repair coupling factor [Clostridium beijerinckii
           NCIMB 8052]
          Length = 1166

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 114/514 (22%), Positives = 219/514 (42%), Gaps = 65/514 (12%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           +++GI S+     + G + SG+ + ++ + E   R  +V+  + + A  LY +    F  
Sbjct: 19  IIQGIESKRYPIGIYGASESGRGYIISGIFENTNRSIVVVTQSDMEAKNLYEDL--IFYT 76

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           + V YF             P  +       +I+  +   R      +L     I+V+S+ 
Sbjct: 77  SEVYYF-------------PVKEMVFYNIDAISGDLRWARLKVINEILNNKKKIIVTSIE 123

Query: 280 CIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
                 +  + + +  ++ K GD V   ++   L++  Y+R ++   +G F + G  +++
Sbjct: 124 AFAAKYTPHNLFLEYSMKFKEGDEVNLADISKKLIQSGYERVEMVEGKGQFSLRGGILDV 183

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP+      +RV +FG++IE I  F   + + I  V+ I I+     +     L      
Sbjct: 184 FPTG-STYPYRVELFGDEIESIRTFNTESQRSIEKVKKIDIFPAKEVIVSEEMLEVGRNK 242

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           +KEE   ++ E +K+   +E  +L + +  +LE+LE T S ++I++Y  Y T     +  
Sbjct: 243 LKEEFN-KIAESDKDSERVE--KLRKILNKNLELLEETSSFETIDSYLPYFT-----KET 294

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT-LAEYGFRLPSCMDNRPLRFEE 517
            +LF+Y  ++    VD       ++   Y  +F    T  ++ G   P           +
Sbjct: 295 ESLFDYF-KNYFFIVDNVQRCNGKLESTYL-EFEENFTAFSQRGDIFPG----------Q 342

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART-------QVED 570
            N L     V+     S+E E+     +E + + +G + P   +  A+T       Q++ 
Sbjct: 343 GNLLINKEEVLE----SFEDEKIA--FIEALTKVSGWLKPLSIVNVAQTTLNNYQGQLDL 396

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + DEI      G + L+   T+   E L   L +R I   Y      T+++IE       
Sbjct: 397 LIDEILGKKNLGYKTLILSGTRARGERLVGTLRDRGIESVYKD----TVDKIE------Y 446

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           G+  +  G N LR G + P+  +  I  +DKE F
Sbjct: 447 GEVVITFG-NQLR-GFEYPQYKVCII--SDKEVF 476


>gi|297545520|ref|YP_003677822.1| transcription-repair coupling factor [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296843295|gb|ADH61811.1| transcription-repair coupling factor [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 1163

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 144/309 (46%), Gaps = 28/309 (9%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           L  G+T S K      ++    +  +V+AP+ I A ++Y +  +F   NA          
Sbjct: 27  LAYGLTDSQKAHVAHYIMSKFNKKVLVIAPDDIEARKIYEDLYSFSFGNA---------- 76

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG----IGSV 287
               +  P+ +    K  + ++++   R    + L       VV+S+    G    +   
Sbjct: 77  ----SLFPKREALFYKIDAASQEMVSQRLRVIKKLTRETPHAVVTSIDAAIGKLIPMNLF 132

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           E Y QM    KIGD V  +E++ + V   Y+R  I   +G F V G  I++F S +E+  
Sbjct: 133 EKY-QMF--FKIGDIVNLQEVIKNFVAMGYERVQIVEGKGQFSVRGGIIDVF-SPIEEYP 188

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
           +R+ +F ++I+ I  F  +T + + N++ I I+  + ++     +   +  + + L   L
Sbjct: 189 YRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEEKHIKKGISAVSKSLNSYL 248

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
           ++++K    + A++L+Q+     E++E     + +EN    +      +   ++ +Y+ E
Sbjct: 249 LKIKKSKSGI-AEKLQQKFE---EIMEEITEAKRVENIHELIDYFY--DEVYSIVDYVGE 302

Query: 468 DSLLFVDES 476
           ++++ +DES
Sbjct: 303 EAVIILDES 311



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H +++  +  +++ D   G++DVLV   ++  GLDIP    + + DADK G    
Sbjct: 861 RVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLGL--- 917

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 918 -SQLYQLRGRVGRS 930


>gi|225375822|ref|ZP_03753043.1| hypothetical protein ROSEINA2194_01454 [Roseburia inulinivorans DSM
           16841]
 gi|225212257|gb|EEG94611.1| hypothetical protein ROSEINA2194_01454 [Roseburia inulinivorans DSM
           16841]
          Length = 1183

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 120/267 (44%), Gaps = 8/267 (2%)

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
           F    A E    Y  + +  AY P  D    +       +   R +A + + E  +C ++
Sbjct: 57  FHEQKAKELLEEYRFFDKNVAYYPAKDILFYQSDIRGNVLTSERINALKMMAEEKECTII 116

Query: 276 SSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           ++   +   + + E + Q + ++ +GD+VE  EL   LV+  Y++       G F V G 
Sbjct: 117 TTFDGLMNPMPAPEKFIQAVKKISVGDTVELNELTRHLVELGYEKNYQAETMGEFSVRGG 176

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I+IFP   E+  +R+ ++G++++ I  F P + + I N+E I IY     V        
Sbjct: 177 IIDIFPL-TEETPFRIELWGDEVDSIRSFDPESQRSIENLEEIYIYPACELVLTEEERRN 235

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
            +  I++E +    +  KE +  EA R++       E     G    ++ Y  Y      
Sbjct: 236 GVAKIQKEAEKAAEKFRKEMKTEEAYRVKSMADQIAEETMEYGITAGLDAYLSYFC---- 291

Query: 455 GEPPPTLFEYI-PEDSLLFVDESHVTI 480
            E   +L +Y+  EDS++F+DE+  TI
Sbjct: 292 -EERVSLLDYLKKEDSIVFLDETVRTI 317



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +A  + E + E N  V Y H ++K  E   I+     G+ DVLV   ++  GLDI     
Sbjct: 851 VAAKIAELVPEAN--VAYAHGQMKETELENIMYKFINGEIDVLVSTTIIETGLDISNVNT 908

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARN 681
           + I DAD  G     + L Q  GR  R+
Sbjct: 909 MIIHDADNMGL----SQLYQLRGRVGRS 932


>gi|258510200|ref|YP_003183634.1| transcription-repair coupling factor [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257476926|gb|ACV57245.1| transcription-repair coupling factor [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 1183

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 141/328 (42%), Gaps = 29/328 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR----PAIVMAPNKILAAQLY 210
            A++ L  G+  R    L+ GVTG+G+   MA +     R      IV+      A  ++
Sbjct: 12  GALSSLADGMGPRRNDILITGVTGAGRQLVMAALYHLRNRRLPESMIVVTHTASHAQTIW 71

Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI-DRMRHSATRSLLER 269
            + K + P   V        Y  PE    R +  ++  +S ++ + DR+      +L + 
Sbjct: 72  EDLKEYLPDARV--------YLYPE----RDNALVDYLASSSDVLADRLH--VLEALAQE 117

Query: 270 NDCIVVSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
              +VV+++   +   + +S +   +V L +G+S    ++++ LV+  Y+R  +   RG 
Sbjct: 118 GPVVVVTTLLAAWQPVTKKSHFLHSLVNLAVGESKPIDDVVAQLVRGGYERVSLVESRGQ 177

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           F V G  +++FP    D+ +R+  F  DI+ I  F P T +     + +        + P
Sbjct: 178 FSVRGGILDVFPMG-HDLPYRIEWFDTDIDSIRTFDPATQRSQDKRDRVSFGPAFDLMLP 236

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
           +P  +     ++  L+ RL  +          RLEQ I+ D+  L        +  Y   
Sbjct: 237 QPVADKVADELEARLEARLKTVTDAAL---RDRLEQSISADIRKLREGQPFAGVARYQLL 293

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDES 476
                  E   TLF+++P+ + +  DE+
Sbjct: 294 YP-----EHADTLFDHVPQPAFVCFDET 316



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 23/139 (16%)

Query: 553 GLVDPPVEIRSART-QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           GLV   +E   AR  QV  VY+++                 RMAE +   +   + RV  
Sbjct: 822 GLVKEAIERELARGGQVYFVYNDVQT-------------IHRMAERVQSLV--PDARVSV 866

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
            H ++   E   ++ D   G++DVLV   ++  GLDIP    + + DADK G     + L
Sbjct: 867 AHGQMAEAELERVMLDFLEGEYDVLVTTTIIETGLDIPNVNTLIVYDADKFGL----SQL 922

Query: 672 IQTIGRAARNVNSKVILYA 690
            Q  GR  R   S  I YA
Sbjct: 923 YQLRGRVGR---SNRIAYA 938


>gi|332685798|ref|YP_004455572.1| transcription-repair coupling factor [Melissococcus plutonius ATCC
           35311]
 gi|332369807|dbj|BAK20763.1| transcription-repair coupling factor [Melissococcus plutonius ATCC
           35311]
          Length = 1181

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 132/307 (42%), Gaps = 25/307 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G+ GS KT  MA      ++  +V+ PN   A QL  + KN  P  +V  F     
Sbjct: 26  QLITGLAGSAKTLVMANGYIQQKKKMMVIVPNLYYANQLVEDLKNLIPTESVHLF----- 80

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVE 288
                      D  I  E + +    R    AT + L  ++   IVV        +    
Sbjct: 81  ---------PVDEVISAEMAFSSPEARAERVATLNFLITKKTGIIVVPVAGLRKYLPKKT 131

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           ++    +  +IG+ ++ + L   LV   Y+RQ +    G F   G  ++I+P + E    
Sbjct: 132 TWKNAQIHWRIGEELDLEALAQQLVLLGYERQSLVGKPGEFSFRGSIVDIYPLNTE-YPI 190

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+ +F  +++ +  F   T + +  ++ + I   +  +  +  L T +K +K  L+ RL 
Sbjct: 191 RMELFDVEVDSLRYFEVDTQRSVETIDEVTISPMTDLIFSKADLETGIKELKNILEKRL- 249

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
            + KE  L + + L++     L   E     ++   Y+ +L      +   TL +Y P +
Sbjct: 250 AITKE--LADKEILQEYFGQLLSSWEQGIPTENAHYYTDFLY-----KEKTTLLDYFPNN 302

Query: 469 SLLFVDE 475
           SLLFVD+
Sbjct: 303 SLLFVDD 309


>gi|169825685|ref|YP_001695843.1| transcription-repair coupling factor [Lysinibacillus sphaericus
           C3-41]
 gi|168990173|gb|ACA37713.1| Transcription-repair coupling factor [Lysinibacillus sphaericus
           C3-41]
          Length = 1169

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 136/322 (42%), Gaps = 26/322 (8%)

Query: 157 IAQLLKGIHSREKV-QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           I   L+ I S +   QL+ G+TGS +   +  + E +++P  +++PN + A ++  E   
Sbjct: 14  ITSFLQDIQSGQTASQLITGLTGSARPVMVDALFEYVKKPIYIVSPNLLQAQRMVDELAG 73

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIV 274
                 V Y+ +              D +I  + S+     R    AT   L R +  + 
Sbjct: 74  LLGEENVHYYPA--------------DEFIAADLSVASPELRAERIATLDCLARGEKAVY 119

Query: 275 VSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V  V+ +  I    E +    +Q  +GD +E    L +LV+  Y R  +    G F + G
Sbjct: 120 VIPVAGLRKIMQPKEHWLHYFLQTTVGDEIEVDAWLQTLVEMGYVRNSMVTTPGEFALRG 179

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++I+P +L     R+ +F  +++ I  F     + I  ++ I+I   S  +  +    
Sbjct: 180 GILDIYPPYLAS-PIRIELFDTEVDSIRTFSADDQRSINKLQKIRILPASEVILTKSERQ 238

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
           T  + +++ L      L+K  R    + L Q I YD+E+L+       +  Y   L  ++
Sbjct: 239 TLAERLEKALGA---SLKKVKRQETKELLYQHIQYDIELLQQGNLPDYVNKYGSLLYDKS 295

Query: 454 PGEPPPTLFEYIPEDSLLFVDE 475
                  L +Y  +D ++  DE
Sbjct: 296 -----AYLGDYFAQDGIVLFDE 312



 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+ + H ++   E   +I     G +DVLV   ++  G+DIP    + + DAD+ G    
Sbjct: 857 RIGHAHGKMSETELESVILSFLEGDYDVLVTTTIIETGVDIPNVNTLIVHDADRMGL--- 913

Query: 668 KTSLIQTIGRAARN 681
              L Q  GR  R+
Sbjct: 914 -AQLYQLRGRVGRS 926


>gi|256751659|ref|ZP_05492534.1| transcription factor CarD [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749468|gb|EEU62497.1| transcription factor CarD [Thermoanaerobacter ethanolicus CCSD1]
          Length = 765

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/306 (20%), Positives = 144/306 (47%), Gaps = 22/306 (7%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           L  G+T S K      ++    +  +V+AP+++ A ++Y +  +F   NA          
Sbjct: 27  LAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEARKIYEDLYSFNFGNA---------- 76

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESY 290
               +  P+ +    K  + ++++   R    + L E +   VV+S+    G +  ++ +
Sbjct: 77  ----SLFPKREALFYKIDAASQEVVSQRLQVIKKLSEESPHAVVTSIDAAVGKLIPMDLF 132

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            +     K+G +V  +E++ SLV   Y+R  +   +G F V G  I++F S  E+  +R+
Sbjct: 133 KKYQFVFKLGVTVNLEEVIKSLVTMGYERVQMVEGKGQFSVRGGIIDVF-SPTEEYPYRI 191

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F ++I+ I  F  +T + + N++ I I+  + ++     +   +  +   L   L ++
Sbjct: 192 ELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAGAEHIKKGISAVSNYLNSYLSKI 251

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
           +K    + A++L+Q+    +E +  +   ++I     Y       +   ++ +Y+ ED++
Sbjct: 252 KKSKSGI-AEKLQQKFEEIMEEITESKRVENIYELIDYFY-----DDVYSIVDYMGEDAV 305

Query: 471 LFVDES 476
           + +DES
Sbjct: 306 IILDES 311


>gi|326390842|ref|ZP_08212394.1| transcription-repair coupling factor [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993101|gb|EGD51541.1| transcription-repair coupling factor [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 1169

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 145/306 (47%), Gaps = 22/306 (7%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           L  G+T S K      ++    +  +V+AP+++ A ++Y +  +F   NA          
Sbjct: 27  LAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEARKIYEDLYSFNFGNA---------- 76

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESY 290
               +  P+ +    K  + ++++   R    + L E +   VV+S+    G +  ++ +
Sbjct: 77  ----SLFPKREALFYKIDAASQEVVSQRLQVIKKLSEGSPHAVVTSIDAAVGKLIPMDLF 132

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            +     K+GD+V  +E++ +LV   Y+R  +   +G F V G  I++F S  E+  +R+
Sbjct: 133 KKYQFVFKLGDTVNLEEVIKNLVTMGYERVQMVEGKGQFSVRGGIIDVF-SPTEEYPYRI 191

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F ++I+ I  F  +T + + N++ I I+  + ++     +   +  +   L   L ++
Sbjct: 192 ELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEAEHIKKGISAVSNYLNSYLSKI 251

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
           +K    + A++L+Q+    +E +  +   ++I     Y       +   ++ +Y+ E+++
Sbjct: 252 KKSKSGI-AEKLQQKFEEIMEEITESKRVENIHELIDYFY-----DDVYSIVDYMGEEAV 305

Query: 471 LFVDES 476
           + +DES
Sbjct: 306 IILDES 311



 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H +++  +  +++ D   G++DVLV   ++  GLDIP    + + DADK G    
Sbjct: 861 RVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLGL--- 917

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 918 -SQLYQLRGRVGRS 930


>gi|227528907|ref|ZP_03958956.1| transcription-repair coupling factor [Lactobacillus vaginalis ATCC
           49540]
 gi|227351181|gb|EEJ41472.1| transcription-repair coupling factor [Lactobacillus vaginalis ATCC
           49540]
          Length = 1170

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 151/320 (47%), Gaps = 28/320 (8%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           Q+L  I   ++ QL+ G++GS +T  +  + +++ +P +V+  +     +L ++ +N  P
Sbjct: 15  QVLTAIQKHQR-QLITGISGSARTLLLTALQKSLNQPQLVITDSLFHMQELAADLENLLP 73

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
              +      Y +   E       T     SS N ++ R++  A  +L+     IV++S 
Sbjct: 74  EEEI------YQFPVEEVLAAEVAT-----SSPNYRLQRVQ--ALNALINNKPAIVIAST 120

Query: 279 SCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           + +   I + E + Q  + LK+G  ++ ++    L    Y+RQ + +  G F V G  I+
Sbjct: 121 AGLRRNIVAPELFKQAELSLKVGGEIDPEKAADQLSSMGYQRQKMVLRPGDFAVRGSIID 180

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           I+  + +D   RV +F  +I+ +  F   T + I+NVE ++I   + ++ P        +
Sbjct: 181 IYSLNTDDPV-RVDLFDTEIDSLRYFDASTQRSIKNVEEVEILPATDFILPVNEFKRVEE 239

Query: 398 YIKEELKMRLIELEKEGRLLE-AQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
            + E+ +    +++ E  L + A R E  +T DL+  + T         + +LT  N   
Sbjct: 240 KLAEQYEQLKRQVDGEDELEQLANRFEPLLT-DLKQHQLT---------NEFLTYTNLIY 289

Query: 457 PPP-TLFEYIPEDSLLFVDE 475
           P   +L +Y+  D ++ +D+
Sbjct: 290 PQEHSLLDYLSADGVVHIDD 309


>gi|307265094|ref|ZP_07546654.1| transcription-repair coupling factor [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919892|gb|EFN50106.1| transcription-repair coupling factor [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 1169

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 145/306 (47%), Gaps = 22/306 (7%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           L  G+T S K      ++    +  +V+AP+++ A ++Y +  +F   NA          
Sbjct: 27  LAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEARKIYEDLYSFNFGNA---------- 76

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESY 290
               +  P+ +    K  + ++++   R    + L E +   VV+S+    G +  ++ +
Sbjct: 77  ----SLFPKREALFYKIDAASQEVVSQRLQVIKKLSEGSPHAVVTSIDAAVGKLIPMDLF 132

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            +     K+GD+V  +E++ +LV   Y+R  +   +G F V G  I++F S  E+  +R+
Sbjct: 133 KKYQFVFKLGDTVNLEEVIKNLVTMGYERVQMVEGKGQFSVRGGIIDVF-SPTEEYPYRI 191

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F ++I+ I  F  +T + + N++ I I+  + ++     +   +  +   L   L ++
Sbjct: 192 ELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEAEHIKKGISAVSNYLNSYLSKI 251

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
           +K    + A++L+Q+    +E +  +   ++I     Y       +   ++ +Y+ E+++
Sbjct: 252 KKSKSGI-AEKLQQKFEEIMEEITESKRVENIHELIDYFY-----DDVYSIVDYMGEEAV 305

Query: 471 LFVDES 476
           + +DES
Sbjct: 306 IILDES 311



 Score = 44.3 bits (103), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H +++  +  +++ D   G++DVLV   ++  GLDIP    + + DADK G    
Sbjct: 861 RVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLGL--- 917

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 918 -SQLYQLRGRVGRS 930


>gi|126653275|ref|ZP_01725386.1| transcription-repair coupling factor [Bacillus sp. B14905]
 gi|126589949|gb|EAZ84078.1| transcription-repair coupling factor [Bacillus sp. B14905]
          Length = 1169

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 136/322 (42%), Gaps = 26/322 (8%)

Query: 157 IAQLLKGIHSREKV-QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           I   L+ I S +   QL+ G+TGS +   +  + E +++P  +++PN + A ++  E   
Sbjct: 14  ITSFLQEIQSGQTASQLITGLTGSARPVMVDALFEYVKKPIYIVSPNLLQAQRMVDELAG 73

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIV 274
                 V Y+ +              D +I  + S+     R    AT   L R +  + 
Sbjct: 74  LLGEENVHYYPA--------------DEFIAADLSVASPELRAERIATLDCLARGEKAVY 119

Query: 275 VSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V  V+ +  I    E +    +Q  +GD +E    L +LV+  Y R  +    G F + G
Sbjct: 120 VIPVAGLRKIMQPKEHWLHYFLQTTVGDEIEVDAWLQTLVEMGYVRNSMVTTPGEFALRG 179

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++I+P +LE    R+ +F  +++ I  F     + I  ++ I+I   S  +  +    
Sbjct: 180 GILDIYPPYLES-PIRIELFDTEVDSIRTFSADDQRSIDKLQKIRILPASEVILTKSERQ 238

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                +++ L   L +++K+      + L Q I YD+E+L+       +  Y   L  + 
Sbjct: 239 NLADRLEKALAASLKKVKKQET---KELLYQHIQYDIELLQQGNLPDYVNKYGSLLYDKT 295

Query: 454 PGEPPPTLFEYIPEDSLLFVDE 475
                  L +Y  +D ++  DE
Sbjct: 296 -----AFLGDYFAQDGIVLFDE 312



 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+ + H ++   E   +I     G +DVLV   ++  G+DIP    + + DAD+ G    
Sbjct: 857 RIGHAHGKMSESELESVILSFLEGDYDVLVTTTIIETGVDIPNVNTLIVHDADRMGL--- 913

Query: 668 KTSLIQTIGRAARN 681
              L Q  GR  R+
Sbjct: 914 -AQLYQLRGRVGRS 926


>gi|289610846|emb|CBI60165.1| unnamed protein product [Sordaria macrospora]
          Length = 140

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 2/101 (1%)

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743
            +VILYAD +T S++ AI ET RRREKQ  +N++H I P ++K +I ++I  +   D  T
Sbjct: 34  GRVILYADRMTGSMERAIAETDRRREKQRAYNEEHGITPTTIKRQIGDIIADVASRDQVT 93

Query: 744 TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
             + ID  +  +     +++++SL KQM  AA NL FE A 
Sbjct: 94  --VEIDEDRPHMVGHNLRSYIESLEKQMREAAANLEFETAG 132


>gi|170756439|ref|YP_001783179.1| transcription-repair coupling factor [Clostridium botulinum B1 str.
           Okra]
 gi|169121651|gb|ACA45487.1| transcription-repair coupling factor [Clostridium botulinum B1 str.
           Okra]
          Length = 1168

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 141/317 (44%), Gaps = 32/317 (10%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G++ SGK + ++ V   +    ++   + + A ++Y +   +              YY P
Sbjct: 34  GLSDSGKNYFISNVFANVDESLVIFTHSDVEARKIYEDLSLYTTEV----------YYLP 83

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV----ESY 290
              V   + Y     +I+  +   R      +L     I+V+   CI  + S     E Y
Sbjct: 84  TKEVVFYNIY-----AISGDLRWERLKVINEILSPKKKIIVT---CIESLESAYIPKELY 135

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           ++   +L +GD +E K L   L+K  Y+R DI   +G F V G  I+I+P  +    +R+
Sbjct: 136 TKYTFKLSVGDIIEIKLLEEKLIKSGYERVDIVENKGEFSVRGGIIDIYPP-ISSEPYRL 194

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             F ++I+ I  F   + + I  V  I I+     +     ++  +K IK +L   +++L
Sbjct: 195 EFFDDEIDSIRNFNVNSQRSIEKVNNINIFPAKEIILEEENISLGLKNIKTDLDKLVLKL 254

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            K+    + ++++  I  +LE L  + S ++I+ +  Y   +       +L +YI E SL
Sbjct: 255 NKKE---DKEKIQSIINSNLEQLNESWSFENIDTFLPYFYNKT-----NSLLDYI-EGSL 305

Query: 471 LFVDESHVTIPQISGMY 487
           + +D+    + ++   Y
Sbjct: 306 IIIDDVKRCLGKLDSTY 322



 Score = 44.3 bits (103), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV+  H ++K  E   ++ D    KFD+L+   ++  G+DI     + I DADK G    
Sbjct: 861 RVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGL--- 917

Query: 668 KTSLIQTIGRAAR 680
            + L Q  GR  R
Sbjct: 918 -SQLYQLRGRVGR 929


>gi|145629309|ref|ZP_01785108.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21]
 gi|144978812|gb|EDJ88535.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21]
          Length = 98

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 45/63 (71%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA+++A
Sbjct: 10  FILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLA 69

Query: 201 PNK 203
           PNK
Sbjct: 70  PNK 72


>gi|258513568|ref|YP_003189790.1| transcription-repair coupling factor [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777273|gb|ACV61167.1| transcription-repair coupling factor [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 1197

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 144/332 (43%), Gaps = 51/332 (15%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           L  G+    + Q++ G++ + K+F +A +++AM++ A+++  +   AA L  + KN  P 
Sbjct: 25  LQNGLAKNRRCQVVSGLSSAQKSFVIAGLVQAMRQTALIITASDQEAAGLTEDLKNLLPD 84

Query: 220 NAVEYFVSYYDY-YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
             V  F +     YQ  AY              +++I R R     SL    + ++++ V
Sbjct: 85  LKVMTFPARRLLPYQVFAY--------------SKEILRQRMEVLESLCRGENPVIIAPV 130

Query: 279 SCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             +   +G    +    ++L +G   E  +++S L +  Y+R ++    G F V G  ++
Sbjct: 131 EALMRRLGPCADFCSARLELNVGQRYELPQMVSCLHEHGYERVNLVESHGQFSVRGGILD 190

Query: 338 IFP-SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           I+P + +  V  RV  F ++++ I  F P T +   N+  ++I+     V  +     A 
Sbjct: 191 IYPITGINPV--RVEFFDDEVDSIRIFNPGTQRSEENMSQMQIFPVREMVVRQGDWERAY 248

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ-------------SIE 443
           + + +E + R   L+K+               D E+L+    C+             SIE
Sbjct: 249 QALSQEYQYRRRNLDKKS--------------DSEVLDNLSRCEEVLDNISQAKYFDSIE 294

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
            Y  Y    +      TL  YI  +SL+ VDE
Sbjct: 295 QYLPYFYDED-----ITLLNYIKAESLVLVDE 321


>gi|170759697|ref|YP_001788879.1| transcription-repair coupling factor [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169406686|gb|ACA55097.1| transcription-repair coupling factor [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 1168

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 141/317 (44%), Gaps = 32/317 (10%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G++ SGK + ++ +   +    ++   + + A ++Y +   +              YY P
Sbjct: 34  GLSDSGKNYFISNIFANVDESLVIFTHSDVEARKIYEDLSLYTTEV----------YYLP 83

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV----ESY 290
              V   + Y     +I+  +   R      +L     I+V+   CI  + S     E Y
Sbjct: 84  TKEVVFYNIY-----AISGDLRWERLKVINEILSPKKKIIVT---CIESLESAYIPKELY 135

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           ++   +L +GD +E K L   L+K  Y+R DI   +G F V G  I+I+P  +    +R+
Sbjct: 136 TKYTFKLSVGDIIEIKLLEEKLIKSGYERVDIVENKGEFSVRGGIIDIYPP-ISSEPYRL 194

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             F ++I+ I  F   + + I  V  I I+     +     ++  +K IK +L   +++L
Sbjct: 195 EFFDDEIDSIRNFNVNSQRSIEKVNNINIFPAKEIILEEENISLGLKNIKTDLDKLVLKL 254

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            K+    + ++++  I  +LE L  + S ++I+ +  Y   +       +L +YI E SL
Sbjct: 255 NKKE---DKEKIQSIINSNLEQLNESWSFENIDTFIPYFYNKT-----NSLLDYI-EGSL 305

Query: 471 LFVDESHVTIPQISGMY 487
           + +D+    + ++   Y
Sbjct: 306 IIIDDVKRCLGKLDSTY 322



 Score = 44.3 bits (103), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV+  H ++K  E   ++ D    KFD+L+   ++  G+DI     + I DADK G    
Sbjct: 861 RVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGL--- 917

Query: 668 KTSLIQTIGRAAR 680
            + L Q  GR  R
Sbjct: 918 -SQLYQLRGRVGR 929


>gi|168181008|ref|ZP_02615672.1| transcription-repair coupling factor [Clostridium botulinum NCTC
           2916]
 gi|226950995|ref|YP_002806086.1| transcription-repair coupling factor [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668078|gb|EDT80057.1| transcription-repair coupling factor [Clostridium botulinum NCTC
           2916]
 gi|226842319|gb|ACO84985.1| transcription-repair coupling factor [Clostridium botulinum A2 str.
           Kyoto]
          Length = 1168

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 141/317 (44%), Gaps = 32/317 (10%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G++ SGK + ++ +   +    ++   + + A ++Y +   +              YY P
Sbjct: 34  GLSDSGKNYFISNIFANVDESLVIFTHSDVEARKIYEDLSLYTTEV----------YYLP 83

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV----ESY 290
              V   + Y     +I+  +   R      +L     I+V+   CI  + S     E Y
Sbjct: 84  TKEVVFYNIY-----AISGDLRWERLKVINEILSPKKKIIVT---CIESLESAYIPKELY 135

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           ++   +L +GD +E K L   L+K  Y+R DI   +G F V G  I+I+P  +    +R+
Sbjct: 136 TKYTFKLSVGDIIEIKLLEEKLIKSGYERVDIVENKGEFSVRGGIIDIYPP-ISSEPYRL 194

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             F ++I+ I  F   + + I  V  I I+     +     ++  +K IK +L   +++L
Sbjct: 195 EFFDDEIDSIRNFNVNSQRSIEKVNNINIFPAKEIILEEENISLGLKNIKTDLDKLVLKL 254

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            K+    + ++++  I  +LE L  + S ++I+ +  Y   +       +L +YI E SL
Sbjct: 255 NKKE---DKEKIQSIINSNLEQLNESWSFENIDTFLPYFYNKT-----NSLLDYI-EGSL 305

Query: 471 LFVDESHVTIPQISGMY 487
           + +D+    + ++   Y
Sbjct: 306 IIIDDVKRCLGKLDSTY 322



 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV+  H ++K  E   ++ D    KFD+L+   ++  G+DI     + I DADK G    
Sbjct: 861 RVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGL--- 917

Query: 668 KTSLIQTIGRAAR 680
            + L Q  GR  R
Sbjct: 918 -SQLYQLRGRVGR 929


>gi|322807864|emb|CBZ05439.1| transcription-repair coupling factor [Clostridium botulinum H04402
           065]
          Length = 1168

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 141/317 (44%), Gaps = 32/317 (10%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G++ SGK + ++ +   +    ++   + + A ++Y +   +              YY P
Sbjct: 34  GLSDSGKNYFISNIFANVDESLVIFTHSDVEARKIYEDLSLYTTEV----------YYLP 83

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV----ESY 290
              V   + Y     +I+  +   R      +L     I+V+   CI  + S     E Y
Sbjct: 84  TKEVVFYNIY-----AISGDLRWERLKVINEILSPKKKIIVT---CIESLESAYIPKELY 135

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           ++   +L +GD +E K L   L+K  Y+R DI   +G F V G  I+I+P  +    +R+
Sbjct: 136 TKYTFKLSVGDIIEIKLLEEKLIKSGYERVDIVENKGEFSVRGGIIDIYPP-ISSEPYRL 194

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             F ++I+ I  F   + + I  V  I I+     +     ++  +K IK +L   +++L
Sbjct: 195 EFFDDEIDSIRNFNVNSQRSIEKVNNINIFPAKEIILEEENISLGLKNIKTDLDKLVLKL 254

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            K+    + ++++  I  +LE L  + S ++I+ +  Y   +       +L +YI E SL
Sbjct: 255 NKKE---DKEKIQSIINSNLEQLNESWSFENIDTFLPYFYNKT-----NSLLDYI-EGSL 305

Query: 471 LFVDESHVTIPQISGMY 487
           + +D+    + ++   Y
Sbjct: 306 IIIDDVKRCLGKLDSTY 322



 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV+  H ++K  E   ++ D    KFD+L+   ++  G+DI     + I DADK G    
Sbjct: 861 RVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGL--- 917

Query: 668 KTSLIQTIGRAAR 680
            + L Q  GR  R
Sbjct: 918 -SQLYQLRGRVGR 929


>gi|167463169|ref|ZP_02328258.1| transcription-repair coupling factor [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 1150

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 137/316 (43%), Gaps = 21/316 (6%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           ++ GI S  K QL+ G+TGS +   +A +++ +QRP +V+  N   A ++  +     P 
Sbjct: 17  IVSGIRSDMKEQLVAGLTGSSRQVMIASLMQELQRPLLVITHNMFSAQKITEDLVECLPE 76

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           N V  +        P   +   +  +    ++ ++ID +    TR        +V     
Sbjct: 77  NQVLLY--------PAQELLAAEVAVASPETLAQRIDVL----TRLAAGFRGVLVTPYAG 124

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
               +   E ++   +++K+GD ++    L+ L +  Y+R D    +G   V G  I+++
Sbjct: 125 LRRLLPPKEMFAAAAMEVKLGDVLDINAFLTRLTELGYERVDRVESKGEISVRGGIIDVY 184

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P   E  A R+ +F ++++ I  F   + + I     I I      V          +  
Sbjct: 185 PLTAE-AALRIELFDDEVDSIRTFDVESQRSIDKQSAIMIPPCREIVADSKRFQRVSQQA 243

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
            E L+    +LEK        +L + I Y++E L      Q+     +Y++   P     
Sbjct: 244 YELLQA---QLEKMSDRTAKDKLLENIGYEIEQLREE---QTFNGMFKYISLFYP--ESH 295

Query: 460 TLFEYIPEDSLLFVDE 475
           TLF+Y+P+D +L +DE
Sbjct: 296 TLFDYMPQDGILLLDE 311



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 7/85 (8%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H ++   E  + I D   G++DVLV  +++  G+DIP    + + DADK G  
Sbjct: 846 DARVSVAHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGL- 904

Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690
              + L Q  GR  R   S  I YA
Sbjct: 905 ---SQLYQLRGRVGR---SNRIAYA 923


>gi|409879|gb|AAD12393.1| Homology to uvrB excision repair gene X03678 [Mycoplasma
           genitalium]
          Length = 130

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/124 (33%), Positives = 61/124 (49%)

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLK 298
           P    YIEK +++NE I R+R S   SL  R D IVV SV+ IY   S   + +  +   
Sbjct: 5   PDKGIYIEKSATVNEAIKRLRVSTLHSLSTRKDVIVVGSVASIYPTSSPSDFVKYCLWFV 64

Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358
           +G   + K +   LV   Y      +  G FR  GD +E+FP + +    R+S F   +E
Sbjct: 65  VGKDYDLKTIKDRLVSLNYVVNKQQLTPGKFRFQGDVLEVFPGYSDAFVIRISFFDTKVE 124

Query: 359 EISE 362
           +I +
Sbjct: 125 QICQ 128


>gi|302023115|ref|ZP_07248326.1| transcription-repair coupling factor [Streptococcus suis 05HAS68]
 gi|330831857|ref|YP_004400682.1| transcription-repair coupling factor [Streptococcus suis ST3]
 gi|329306080|gb|AEB80496.1| transcription-repair coupling factor [Streptococcus suis ST3]
          Length = 1164

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 139/307 (45%), Gaps = 28/307 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QLLLG+TG+ K+  MA   ++M    +++   +  A +L ++         V      Y+
Sbjct: 26  QLLLGLTGTSKSLVMATAYDSMAEKIMIVTATQNDAEKLVADLVAIIGSENV------YN 79

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
           ++  ++  P  +     +     +ID +      +    +  +V S  +C   + S E+Y
Sbjct: 80  FFTDDS--PIAEFVFASKERTQSRIDSLNFLTDST---SSGILVASMAACRVLLPSPETY 134

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
               ++L++G  +E  +L+++LV   YK+    + +G F   GD ++IF    E   +R+
Sbjct: 135 KGSKIKLEVGQEIEVDKLVNNLVNIGYKKVSRVLTQGEFSQRGDILDIFDMQAE-TPYRI 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             FG++I+ I  F   + + + N++ I I   S  +      + A +YI+          
Sbjct: 194 EFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYSRASQYIQTA-------- 245

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
                 +E   LE++ +Y  E+L    +     +  ++L+     E   TL +Y+P+ S 
Sbjct: 246 ------IEQSTLEEQQSYLREVLADMQTEYRHPDLRKFLSCIY--EQSWTLLDYLPKSSP 297

Query: 471 LFVDESH 477
           LF+D+ H
Sbjct: 298 LFLDDFH 304


>gi|188589474|ref|YP_001919598.1| transcription-repair coupling factor [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499755|gb|ACD52891.1| transcription-repair coupling factor [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 1167

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 108/518 (20%), Positives = 224/518 (43%), Gaps = 66/518 (12%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + ++LK I+ +     + G++ SGK++ +  + E +++  +++  + + A  LY +    
Sbjct: 16  LQKVLKSINEKTYPVGIYGLSDSGKSYMIDGIFENIEKSIVIVTQSDMEAKNLYEDL--I 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVV 275
              N V YF             P  +T      +I+  +   R +    +L  +N  IV+
Sbjct: 74  LYTNEVYYF-------------PVKETVFYNIDAISGDLRWARLNVINEILNNKNKKIVI 120

Query: 276 SSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +S+ S +      + +++  + +K G  V   E+   L++  Y+R +I   +G F V G 
Sbjct: 121 TSIDSFMATYAPHKLFAKYSMTIKQGTEVNFNEISLKLIESGYERVEIVESKGQFSVRGG 180

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++IFP+      +RV +FG+++E I  F   + + I  V++ K++     +  + ++  
Sbjct: 181 ILDIFPT-CSTYPYRVELFGDEVESIRTFNSESQRSIDKVKSFKVFPAKEIIVSQESMTK 239

Query: 395 AMKYIKEELK-MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
           A + I  E K + L   EKE      ++LE+ +  ++E LE   + ++I++Y  Y     
Sbjct: 240 AKELILNEFKEISLNNKEKE----RIEKLEKVVKSNIESLEENLTFETIDSYLPYFY--- 292

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS-----CM 508
             +   + F+Y  +D L  +++      ++   Y        +  E G  LP        
Sbjct: 293 --DEIESFFDYF-KDYLFIMNDVKRCKGKLESSYLEFAENFTSFLERGDILPGQEKLLIN 349

Query: 509 DNRPL-RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP-TGLVDPPVEIRSART 566
           ++  L +FEE N L   T+  +                E+ +RP T +      + + + 
Sbjct: 350 EHDTLDKFEESNILFFETLNNT----------------EKFLRPFTSIELKQTTLSNYQG 393

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q++ + ++I     +G + ++   TK   E L + L +R +   Y             I 
Sbjct: 394 QLDILIEDILDKKSKGYKTVILSGTKVRGERLVDTLRDRGVESSYRDK----------IE 443

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            ++ G+  +  G  L  +G + PE  +  I  +DKE F
Sbjct: 444 QIQFGEVVITCGNQL--KGFEYPEYKVCVI--SDKEVF 477


>gi|149182807|ref|ZP_01861269.1| transcription-repair coupling factor [Bacillus sp. SG-1]
 gi|148849474|gb|EDL63662.1| transcription-repair coupling factor [Bacillus sp. SG-1]
          Length = 1177

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 135/323 (41%), Gaps = 21/323 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +  L  G+      QL+ G++GS ++  +A +     + AIV+  N + A ++Y +
Sbjct: 10  QNEELQALASGVEEGLGEQLVAGLSGSSRSVFIASMFRKTGKSAIVLTHNLLQAQKIYED 69

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
              F     V        Y  P   +   +  +      +++I+ +   AT    ++   
Sbjct: 70  LLQFLNDEEV--------YLYPANELIAAELSVASPELKSQRIEVLNRLAT----DQKGI 117

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
            VV +      +     +  M +   +G+ V+   LL  L+   Y+R ++    G F + 
Sbjct: 118 FVVPAAGLRKILPPKSLWKSMQLSFTLGEDVDLDNLLEQLLVMGYQRNEMVGTPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++IFP  LE    R+ +F  +++ I  F     + I  ++ + I   S  +     L
Sbjct: 178 GGILDIFPHTLE-TPVRIELFDTEVDSIRSFSLEDQRSIEKLKDVHIGPASETIMKGEHL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              +  ++  L   L +++ +      ++L Q I Y+LE L      Q +  Y  +    
Sbjct: 237 ANIIDRLEAGLAKSLKKIKSDSV---KEKLTQNIGYELEQLRNGQKSQQVYKYLSFAY-- 291

Query: 453 NPGEPPPTLFEYIPEDSLLFVDE 475
              + P +L +Y+PED + F+DE
Sbjct: 292 ---DEPASLLDYLPEDGIFFLDE 311



 Score = 44.3 bits (103), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV + H ++   E   +I     G+FDVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVAFAHGKMNETELESVILSFLDGEFDVLVTTTIIETGVDIPNVNTLIVYDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|223933455|ref|ZP_03625440.1| transcription-repair coupling factor [Streptococcus suis 89/1591]
 gi|223897893|gb|EEF64269.1| transcription-repair coupling factor [Streptococcus suis 89/1591]
          Length = 1164

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 139/307 (45%), Gaps = 28/307 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QLLLG+TG+ K+  MA   ++M    +++   +  A +L ++         V      Y+
Sbjct: 26  QLLLGLTGTSKSLVMATAYDSMAEKIMIVTATQNDAEKLVADLVAIIGSENV------YN 79

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
           ++  ++  P  +     +     +ID +      +    +  +V S  +C   + S E+Y
Sbjct: 80  FFTDDS--PIAEFVFASKERTQSRIDSLNFLTDST---SSGILVASMAACRVLLPSPETY 134

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
               ++L++G  +E  +L+++LV   YK+    + +G F   GD ++IF    E   +R+
Sbjct: 135 KGSKIKLEVGQEIEVDKLVNNLVNIGYKKVSRVLTQGEFSQRGDILDIFDMQAE-TPYRI 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             FG++I+ I  F   + + + N++ I I   S  +      + A +YI+          
Sbjct: 194 EFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYSRASQYIQTA-------- 245

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
                 +E   LE++ +Y  E+L    +     +  ++L+     E   TL +Y+P+ S 
Sbjct: 246 ------IEQSTLEEQQSYLREVLADMQTEYRHPDLRKFLSCIY--EQSWTLLDYLPKSSP 297

Query: 471 LFVDESH 477
           LF+D+ H
Sbjct: 298 LFLDDFH 304


>gi|153940210|ref|YP_001392893.1| transcription-repair coupling factor [Clostridium botulinum F str.
           Langeland]
 gi|152936106|gb|ABS41604.1| transcription-repair coupling factor [Clostridium botulinum F str.
           Langeland]
 gi|295320870|gb|ADG01248.1| transcription-repair coupling factor [Clostridium botulinum F str.
           230613]
          Length = 1168

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 140/317 (44%), Gaps = 32/317 (10%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G++ SGK + ++ +   +    ++   + + A ++Y +   +              YY P
Sbjct: 34  GLSDSGKNYFISNIFANVDESLVIFTHSDVEARKIYEDLSLYTTEV----------YYLP 83

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV----ESY 290
              V   + Y     +I+  +   R      +L     I+V+   CI  + S     E Y
Sbjct: 84  TKEVVFYNIY-----AISGDLRWERLKVINEILSPKKKIIVT---CIESLESAYIPKELY 135

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           ++   +L +GD +E K L   L+K  Y+R DI   +G F V G  I+I+P  +    +R+
Sbjct: 136 TKYTFKLSVGDIIEIKLLEEKLIKSGYERVDIVENKGEFSVRGGIIDIYPP-ISSEPYRL 194

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             F ++I+ I  F   + + I  V  I I+     +     ++  +K IK +L   ++ L
Sbjct: 195 EFFDDEIDSIRNFNVNSQRSIEKVNNINIFPAKEIILEEENISLGLKNIKTDLDKLVLRL 254

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            K+    + ++++  I  +LE L  + S ++I+ +  Y   +       +L +YI E SL
Sbjct: 255 NKKE---DKEKIQSIINSNLEQLNESWSFENIDTFLPYFYNKT-----NSLLDYI-EGSL 305

Query: 471 LFVDESHVTIPQISGMY 487
           + +D+    + ++   Y
Sbjct: 306 IIIDDVKRCLGKLDSTY 322



 Score = 44.3 bits (103), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV+  H ++K  E   ++ D    KFD+L+   ++  G+DI     + I DADK G    
Sbjct: 861 RVQIAHGQMKEKELEHVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGL--- 917

Query: 668 KTSLIQTIGRAAR 680
            + L Q  GR  R
Sbjct: 918 -SQLYQLRGRVGR 929


>gi|99034182|ref|ZP_01314264.1| hypothetical protein Wendoof_01000940 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 60

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           FQ+ T + P+GDQP AI  L+ G++S ++ Q+LLGVTGSGKTFTMA VI    RPA++
Sbjct: 3   FQITTHFQPAGDQPQAIDSLIAGLNSNKRDQVLLGVTGSGKTFTMANVIARTNRPALI 60


>gi|307706692|ref|ZP_07643498.1| uvrABC system protein B [Streptococcus mitis SK321]
 gi|307617936|gb|EFN97097.1| uvrABC system protein B [Streptococcus mitis SK321]
          Length = 107

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 74/111 (66%), Gaps = 9/111 (8%)

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPILLEDAATT 744
           +YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I     +  E+    
Sbjct: 1   MYADTVTQSMQHAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLIAVTKAVAKEEKKEV 60

Query: 745 NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +I+      +L+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 61  DIN------NLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 105


>gi|322381190|ref|ZP_08055193.1| transcription-repair coupling factor-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154766|gb|EFX47037.1| transcription-repair coupling factor-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 1173

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 137/316 (43%), Gaps = 21/316 (6%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           ++ GI S  K QL+ G+TGS +   +A +++ +QRP +V+  N   A ++  +     P 
Sbjct: 17  IVSGIRSDMKEQLVAGLTGSSRQVMIASLMQELQRPLLVITHNMFSAQKITEDLVECLPE 76

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           N V  +        P   +   +  +    ++ ++ID +    TR        +V     
Sbjct: 77  NQVLLY--------PAQELLAAEVAVASPETLAQRIDVL----TRLAAGFRGVLVTPYAG 124

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
               +   E ++   +++K+GD ++    L+ L +  Y+R D    +G   V G  I+++
Sbjct: 125 LRRLLPPKEMFAAAAMEVKLGDVLDINAFLTRLTELGYERVDRVESKGEISVRGGIIDVY 184

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P   E  A R+ +F ++++ I  F   + + I     I I      V          +  
Sbjct: 185 PLTAE-AALRIELFDDEVDSIRTFDVESQRSIDKQSAIMIPPCREIVADSKRFQRVSQQA 243

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
            E L+    +LEK        +L + I Y++E L      Q+     +Y++   P     
Sbjct: 244 YELLQA---QLEKMSDRTAKDKLLENIGYEIEQLREE---QTFNGMFKYISLFYP--ESH 295

Query: 460 TLFEYIPEDSLLFVDE 475
           TLF+Y+P+D +L +DE
Sbjct: 296 TLFDYMPQDGILLLDE 311



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 7/85 (8%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H ++   E  + I D   G++DVLV  +++  G+DIP    + + DADK G  
Sbjct: 846 DARVSVAHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGL- 904

Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690
              + L Q  GR  R   S  I YA
Sbjct: 905 ---SQLYQLRGRVGR---SNRIAYA 923


>gi|302390888|ref|YP_003826708.1| transcription-repair coupling factor [Acetohalobium arabaticum DSM
           5501]
 gi|302202965|gb|ADL11643.1| transcription-repair coupling factor [Acetohalobium arabaticum DSM
           5501]
          Length = 1175

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 180/411 (43%), Gaps = 39/411 (9%)

Query: 259 RHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           R +A   L  R++ I+++ + + +  +   + ++    ++    +VE K++ S L+ Q Y
Sbjct: 104 RLTALEKLTTRDESIIIAPIQALLMKLPPADIFADYSFRIDFDSTVELKKISSQLINQGY 163

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   +G F + G  I+I+P    +   R+ +FG+++E I EF   T + I+ +  +
Sbjct: 164 CRVDMVENKGDFSIRGGIIDIYPLTRSN-PVRIELFGDEVESIREFDLATQRSIKELNDV 222

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I   +  +    +L   +  + +ELK     L ++G+  EA+ LE+++  DLE +E   
Sbjct: 223 HIPPATEILLDSDSLQQGIAKLNKELKQNREVLIEDGKNKEAKELERKLETDLEQIEEGI 282

Query: 438 SCQSIENY-SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR--K 494
              +I  Y   + +G +      TL +Y  E SL+F   + +    +  M   D H   +
Sbjct: 283 QFPAIRQYLPAFYSGLS------TLIDYFNEGSLVFDSPNRIQKRAVDLM---DDHNGLR 333

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT-- 552
            +L   G  L S   N    F  +  L   T   S       L + Q I   ++ R    
Sbjct: 334 LSLLNQGSVLSSYAKN----FASFEELLTETYDYS----KLYLNKTQEIKSLRVDRKLEF 385

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
            L + PV     R Q+    DE+    +Q  R+++T+ T+   + L   L E ++   Y 
Sbjct: 386 NLKETPV----FRGQINHFLDELKQLIEQQYRVIITLSTESKCKRLINSLQEEDLTAFYT 441

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                     EI   L+ G  ++ V  + L++G  +P+   +   + D  G
Sbjct: 442 E---------EITDKLQSG--NIAVTTDALQKGFSLPDLKFILFTETDIFG 481


>gi|184152907|ref|YP_001841248.1| transcription-repair coupling factor [Lactobacillus reuteri JCM
           1112]
 gi|183224251|dbj|BAG24768.1| transcription-repair coupling factor [Lactobacillus reuteri JCM
           1112]
          Length = 1178

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 139/307 (45%), Gaps = 23/307 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS +T  ++ + +  QRP +V+        +L S+ +N  P N V      Y 
Sbjct: 26  QLITGISGSARTELLSALSKEGQRPILVVTDTISHMQELASDLENLLPANRV------YQ 79

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVES 289
           +   E       T     SS N ++ R+   A  +L+     +VV+S + +   I S E 
Sbjct: 80  FPVEEVLAAEVAT-----SSPNYRLQRVL--ALNALINNEPAVVVASAAGLRRNIISPEY 132

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           ++Q  +++K G  V+  ++   L    Y+ Q + +  G F + G  I+I+  +  D   R
Sbjct: 133 FAQSSLKIKTGGEVDPVKIRQQLSAMGYQYQKMVLRPGDFAIRGSIIDIYALN-TDNPVR 191

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           + +F  +++ +  F   T + I NVE ++I   + ++ P    +   + +  E K  + E
Sbjct: 192 IDLFDTEVDSLRYFDASTQRSIDNVEEVQILPATDFIIPATEFSRVYEALDTEYKKVVKE 251

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP-TLFEYIPED 468
           L  +        ++Q++    E L      Q + N    L   N   P   +LF+Y+P+D
Sbjct: 252 LSADD-----ADIKQQVANRFEPLLNALKNQHLPN--ELLEFSNLVYPTKHSLFDYLPDD 304

Query: 469 SLLFVDE 475
             ++ D+
Sbjct: 305 GTIYFDD 311


>gi|168335026|ref|ZP_02693140.1| transcription-repair coupling factor [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 1175

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 127/273 (46%), Gaps = 7/273 (2%)

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIV 295
           Y P  D         + +I + R  A  ++++ N+ I+V+++  +   +   + + +  +
Sbjct: 84  YYPSRDILFYNADVHSNEIVKQRIEALDAIIKNNEAIIVTTIDALLNPLSPKDEFIRAQI 143

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +KIGD+V+ + +   L++  Y+R     + G F + G  ++IF S   +   R+ ++  
Sbjct: 144 VIKIGDTVDLQSMSYQLIENGYERVGRVEVVGQFAIRGGIMDIF-SPANNTPIRMELWDT 202

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F P+T + I N+E   IY N   + PR  L  A+  I++ELK  +  L + G 
Sbjct: 203 EIDSIRRFSPITQRTIDNIERAYIYPNQEIIIPREKLLKAIPIIEKELKATIGVLRESGA 262

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
              A R+++    D+E +    + ++   Y+ +           +LF+Y+     +F+ +
Sbjct: 263 KSAANRIKENTNEDIESIVNGLNIETQVLYAPFCDMET-----ASLFDYLEYKKTIFITD 317

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
                 ++  ++        +  EYG  LPS +
Sbjct: 318 IKKCKDKLLRVFLEYEESVKSRLEYGHMLPSMV 350


>gi|148543499|ref|YP_001270869.1| transcription-repair coupling factor [Lactobacillus reuteri DSM
           20016]
 gi|227363648|ref|ZP_03847762.1| transcription-repair coupling factor [Lactobacillus reuteri MM2-3]
 gi|325681843|ref|ZP_08161362.1| transcription-repair coupling factor [Lactobacillus reuteri MM4-1A]
 gi|148530533|gb|ABQ82532.1| transcription-repair coupling factor [Lactobacillus reuteri DSM
           20016]
 gi|227071317|gb|EEI09626.1| transcription-repair coupling factor [Lactobacillus reuteri MM2-3]
 gi|324978934|gb|EGC15882.1| transcription-repair coupling factor [Lactobacillus reuteri MM4-1A]
          Length = 1179

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 139/307 (45%), Gaps = 23/307 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS +T  ++ + +  QRP +V+        +L S+ +N  P N V      Y 
Sbjct: 27  QLITGISGSARTELLSALSKEGQRPILVVTDTISHMQELASDLENLLPANRV------YQ 80

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVES 289
           +   E       T     SS N ++ R+   A  +L+     +VV+S + +   I S E 
Sbjct: 81  FPVEEVLAAEVAT-----SSPNYRLQRVL--ALNALINNEPAVVVASAAGLRRNIISPEY 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           ++Q  +++K G  V+  ++   L    Y+ Q + +  G F + G  I+I+  +  D   R
Sbjct: 134 FAQSSLKIKTGGEVDPVKIRQQLSAMGYQYQKMVLRPGDFAIRGSIIDIYALN-TDNPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           + +F  +++ +  F   T + I NVE ++I   + ++ P    +   + +  E K  + E
Sbjct: 193 IDLFDTEVDSLRYFDASTQRSIDNVEEVQILPATDFIIPATEFSRVYEALDTEYKKVVKE 252

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP-TLFEYIPED 468
           L  +        ++Q++    E L      Q + N    L   N   P   +LF+Y+P+D
Sbjct: 253 LSADD-----ADIKQQVANRFEPLLNALKNQHLPN--ELLEFSNLVYPTKHSLFDYLPDD 305

Query: 469 SLLFVDE 475
             ++ D+
Sbjct: 306 GTIYFDD 312


>gi|319757180|gb|ADV69122.1| transcription-repair coupling factor [Streptococcus suis JS14]
          Length = 1164

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 138/307 (44%), Gaps = 28/307 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QLLLG++G+ K+  MA   + +    +++   +  A +L ++         V      Y+
Sbjct: 26  QLLLGLSGTSKSLIMATAYDCLAEKIMIVTATQNDAEKLVADLTAIIGRENV------YN 79

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
           ++  ++  P  +     +     +ID +      +    +  +V S V+C   + S E+Y
Sbjct: 80  FFTDDS--PIAEFVFASKERTQSRIDSLNFLTDST---SSGILVASIVACRVLLPSPETY 134

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
               +QL++G  +E  +L+ +LV   YK+    + +G F   GD ++IF    E   +R+
Sbjct: 135 KGSKIQLEVGQEIEVDKLVKNLVNIGYKKVSRVLTQGEFSQRGDILDIFDMQSE-TPYRI 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             FG++I+ I  F   + + + N++ I I   S  +      + A +YI+          
Sbjct: 194 EFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYSRASQYIQTA-------- 245

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
                 +E   LE++ +Y  E+L    +     +  ++L+     E   TL +Y+P+ S 
Sbjct: 246 ------IEQSTLEEQQSYLREVLADMQTEYRHPDLRKFLSCIY--EQSWTLLDYLPKSSP 297

Query: 471 LFVDESH 477
           LF+D+ H
Sbjct: 298 LFLDDFH 304


>gi|404614|gb|AAD10554.1| UvrB protein [Mycoplasma genitalium]
          Length = 83

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 55/81 (67%), Gaps = 3/81 (3%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + N +K  + FQ+ T+Y P+GDQP AI +L +    + K Q+LLG T +GKTFT+A VI+
Sbjct: 6   MKNQTKSNSLFQLSTNYIPTGDQPEAIKKLSE---FKTKQQVLLGATATGKTFTIANVIQ 62

Query: 191 AMQRPAIVMAPNKILAAQLYS 211
             Q P +V+A NK LA QL++
Sbjct: 63  NSQLPTVVIAHNKTLAGQLFN 83


>gi|251779351|ref|ZP_04822271.1| transcription-repair coupling factor [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243083666|gb|EES49556.1| transcription-repair coupling factor [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 1167

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 106/515 (20%), Positives = 222/515 (43%), Gaps = 60/515 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + ++LK I+ +     + G++ SGK++ +  + E +++  +++  + + A  LY +    
Sbjct: 16  LQKVLKSINEKTYPVGIYGLSDSGKSYMIDGIFENIEKSIVIVTQSDMEAKNLYEDL--I 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVV 275
              N V YF             P  +T      +I+  +   R +    +L  +N  IV+
Sbjct: 74  LYTNEVYYF-------------PVKETVFYNIDAISGDLRWARLNVINEILNNKNKKIVI 120

Query: 276 SSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +S+ S +      + +++  + +K G  V   E+   L++  Y+R +I   +G F V G 
Sbjct: 121 TSIDSFMATYAPHKLFAKYSMTIKQGTEVNFNEISLKLIESGYERVEIVESKGQFSVRGG 180

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++IFP+      +RV +FG+++E I  F   + + I  V++ K++     +  + ++  
Sbjct: 181 ILDIFPT-CSTYPYRVELFGDEVESIRTFNSESQRSIDKVKSFKVFPAKEIIVSQESMTK 239

Query: 395 AMKYIKEELK-MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
           A + I  E K + L   EKE      ++LE+ +  ++E LE   + ++I++Y  Y     
Sbjct: 240 AKELILNEFKEISLNNKEKE----RIEKLEKVVKSNIESLEENLTFETIDSYLPYFY--- 292

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             +   + F+Y  +D L  +++      ++   Y        +  E G  LP     + L
Sbjct: 293 --DEIESFFDYF-KDYLFIMNDVKRCKGKLESSYLEFAENFTSFLERGDILPG---QKKL 346

Query: 514 RFEEWNCL---RPTTIVVSATPGSWELEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVE 569
              E + L     + I+   T  +           E+ +RP T +      + + + Q++
Sbjct: 347 LINEHDTLDKFEESKILFFETLNN----------TEKFLRPFTSIELKQTTLSNYQGQLD 396

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + ++I     +G + ++   TK   E L + L +R +   Y             I  ++
Sbjct: 397 ILIEDILDKKSKGYKTVILSGTKVRGERLVDTLRDRGVESSYRDK----------IEQIQ 446

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            G+  +  G  L  +G + PE  +  I  +DKE F
Sbjct: 447 FGEVVITCGNQL--KGFEYPEYKVCVI--SDKEVF 477


>gi|146317670|ref|YP_001197382.1| transcription-repair coupling factor [Streptococcus suis 05ZYH33]
 gi|253750931|ref|YP_003024072.1| transcription-repair coupling factor [Streptococcus suis SC84]
 gi|253752830|ref|YP_003025970.1| transcription-repair coupling factor [Streptococcus suis P1/7]
 gi|253754655|ref|YP_003027795.1| transcription-repair coupling factor [Streptococcus suis BM407]
 gi|145688476|gb|ABP88982.1| Transcription-repair coupling factor (superfamily II helicase)
           [Streptococcus suis 05ZYH33]
 gi|251815220|emb|CAZ50784.1| putative transcription-repair coupling factor [Streptococcus suis
           SC84]
 gi|251817119|emb|CAZ54840.1| putative transcription-repair coupling factor [Streptococcus suis
           BM407]
 gi|251819075|emb|CAR44089.1| putative transcription-repair coupling factor [Streptococcus suis
           P1/7]
 gi|292557472|gb|ADE30473.1| Transcription-repair coupling factor [Streptococcus suis GZ1]
          Length = 1164

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 138/307 (44%), Gaps = 28/307 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QLLLG++G+ K+  MA   + +    +++   +  A +L ++         V      Y+
Sbjct: 26  QLLLGLSGTSKSLIMATAYDCLAEKIMIVTATQNDAEKLVADLTAIIGSENV------YN 79

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
           ++  ++  P  +     +     +ID +      +    +  +V S V+C   + S E+Y
Sbjct: 80  FFTDDS--PIAEFVFASKERTQSRIDSLNFLTDST---SSGILVASIVACRVLLPSPETY 134

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
               +QL++G  +E  +L+ +LV   YK+    + +G F   GD ++IF    E   +R+
Sbjct: 135 KGSKIQLEVGQEIEVDKLVKNLVNIGYKKVSRVLTQGEFSQRGDILDIFDMQSE-TPYRI 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             FG++I+ I  F   + + + N++ I I   S  +      + A +YI+          
Sbjct: 194 EFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYSRASQYIQTA-------- 245

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
                 +E   LE++ +Y  E+L    +     +  ++L+     E   TL +Y+P+ S 
Sbjct: 246 ------IEQSTLEEQQSYLREVLADMQTEYRHPDLRKFLSCIY--EQSWTLLDYLPKSSP 297

Query: 471 LFVDESH 477
           LF+D+ H
Sbjct: 298 LFLDDFH 304


>gi|311028986|ref|ZP_07707076.1| transcription-repair coupling factor [Bacillus sp. m3-13]
 gi|311032274|ref|ZP_07710364.1| transcription-repair coupling factor [Bacillus sp. m3-13]
          Length = 1178

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/317 (20%), Positives = 145/317 (45%), Gaps = 23/317 (7%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           +L G+    + QL+ G++ S ++  +A + E  + P +++  N   A ++Y +  +F P 
Sbjct: 17  VLVGLQEGLQEQLISGISNSARSMLIAALYEERKAPILLITHNLFHAQKVYDDLASFLPE 76

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           + +        Y  P   V   +  I       ++++ + H AT+     N+ I+++ ++
Sbjct: 77  DQL--------YLYPVNDVLAAEIGIASPELKAQRVEALNHWATK-----NNGIIIAPIA 123

Query: 280 CIYGI-GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
            +  I  S E + Q ++ +++  ++E   L   LV+  Y+R  +    G F + G  I+I
Sbjct: 124 GLKRILPSKEKWQQTLLTIEVEKTLELDNLAERLVRFGYQRVGMVATPGDFSIRGGIIDI 183

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           +P   E+ A R+ +F +++E I  F     +  +++  + I   +  +     L    + 
Sbjct: 184 YPI-TEEYAIRIELFDDEVESIRYFTVEDQRSQKHMVMVTIGPATEMLLTDQELANGREV 242

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           +++EL   + +++ +      Q L + I+Y+LE +        +  Y  +         P
Sbjct: 243 LEKELAKTIKKMKNDKV---KQLLTENISYELEQIRNGQVFSELYKYLSFFYS-----SP 294

Query: 459 PTLFEYIPEDSLLFVDE 475
            +L +YIP   ++ +DE
Sbjct: 295 ASLLDYIPRGGIVIMDE 311



 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y H ++   E   ++     G+ +VLV   ++  G+DIP    + + DAD+ G    
Sbjct: 860 RVTYAHGKMTENELESVMIQFLEGEAEVLVSTTIIETGVDIPNVNTLIVFDADRMGL--- 916

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 917 -SQLYQLRGRVGRS 929


>gi|302388692|ref|YP_003824513.1| transcription-repair coupling factor [Thermosediminibacter oceani
           DSM 16646]
 gi|302199320|gb|ADL06890.1| transcription-repair coupling factor [Thermosediminibacter oceani
           DSM 16646]
          Length = 1177

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 108/499 (21%), Positives = 201/499 (40%), Gaps = 58/499 (11%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G++ S + F +A V +   +P +V+  + + A +L  +   F     VE F         
Sbjct: 31  GLSDSQRAFLIAAVRKRFPKPVLVVTADSLDARKLADDLAYFLGTEDVEMF--------- 81

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQM 293
               P +     + ++ + ++   R     SL+     +VVS +  +   +   +   + 
Sbjct: 82  ----PASSVIPYETAARSPELTAQRLKVMESLVTGKQPVVVSPLQALTNRMMPPDVVKKF 137

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            ++L++GDS+  +E +  L    Y+R D    RG F V G  ++++P   E+  +R+  F
Sbjct: 138 TIKLRVGDSIPLEEAVLKLSFMGYERVDTVEGRGQFAVRGGILDVYPLTAEN-PYRMEFF 196

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
           G++++ I EF     + +  +E + I+     V  R T   A   I  EL+ R    E  
Sbjct: 197 GDEVDSIREFSVEDQRSMDKLEEVFIFPAREVVFDRETAKNAAISIARELEDRKKAFELT 256

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL-- 471
           G    A +LE++I   LE +E   + Q  E+   Y++         T +  +P   +L  
Sbjct: 257 GSAQIAAQLEEKI---LEHIEKLENGQFFESAQHYISHFYSNLSALTDYFTLPPLVILVE 313

Query: 472 ---FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT-TIV 527
               V+ +  +  +I   Y+G       L E G  LPS  +     F+    LR + T+ 
Sbjct: 314 PGKIVESTKNSAFEIEETYKG-------LLEKGEVLPSVSEMYFTPFDILENLRKSKTVY 366

Query: 528 VSA---TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
           +S     PG +E+          +    G VD   E             E+    ++G R
Sbjct: 367 ISMLPRIPGEFEIGGLYSFQFRSVTSFHGKVDLLAE-------------EVAHFKKKGYR 413

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   T    + L+  L E+ +   +  +         +  +L  G+  V++    L +
Sbjct: 414 VVILSGTGERGKHLSRTLREKALDAAFYGT---------LGDELLPGQ--VVITPGSLEK 462

Query: 645 GLDIPECGLVAILDADKEG 663
           G  IPE     I D D  G
Sbjct: 463 GFQIPEIKFALISDLDVYG 481



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+   H ++   E  E++ D    ++DVLV   ++  GLDIP    + ++ AD+ G    
Sbjct: 865 RIAVAHGQMHENELEEVMMDFYEHRYDVLVCTTIIETGLDIPNVNTLIVISADRFGL--- 921

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 922 -SQLYQLRGRVGRS 934


>gi|148381479|ref|YP_001256020.1| transcription-repair coupling factor [Clostridium botulinum A str.
           ATCC 3502]
 gi|153934098|ref|YP_001385854.1| transcription-repair coupling factor [Clostridium botulinum A str.
           ATCC 19397]
 gi|153937373|ref|YP_001389261.1| transcription-repair coupling factor [Clostridium botulinum A str.
           Hall]
 gi|148290963|emb|CAL85099.1| transcription-repair coupling factor [Clostridium botulinum A str.
           ATCC 3502]
 gi|152930142|gb|ABS35642.1| transcription-repair coupling factor [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933287|gb|ABS38786.1| transcription-repair coupling factor [Clostridium botulinum A str.
           Hall]
          Length = 1168

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 140/317 (44%), Gaps = 32/317 (10%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G++ SGK + ++ +   +    ++   + + A ++Y +   +              YY P
Sbjct: 34  GLSDSGKNYFISNIFANVDESLVIFTHSDVEARKIYEDLSLYTTEV----------YYLP 83

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV----ESY 290
              V   + Y     +I+  +   R      +L     I+V+   CI  + S     E Y
Sbjct: 84  TKEVVFYNIY-----AISGDLRWERLKVINEILSPKKKIIVT---CIESLESAYIPKELY 135

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           ++   +L +GD +E K L   L+K  Y+R DI   +G F   G  I+I+P  +    +R+
Sbjct: 136 TKYTFKLSVGDIIEIKLLEEKLIKSGYERVDIVENKGEFSARGGIIDIYPP-ISSEPYRL 194

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             F ++I+ I  F   + + I  V  I I+     +     ++  +K IK +L   +++L
Sbjct: 195 EFFDDEIDSIRNFNVNSQRSIEKVNNINIFPAKEIILEEENISLGLKNIKTDLDKLVLKL 254

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            K+    + ++++  I  +LE L  + S ++I+ +  Y   +       +L +YI E SL
Sbjct: 255 NKKE---DKEKIQSIINSNLEQLNESWSFENIDTFLPYFYNKT-----NSLLDYI-EGSL 305

Query: 471 LFVDESHVTIPQISGMY 487
           + +D+    + ++   Y
Sbjct: 306 IIIDDVKRCLGKLDSTY 322



 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV+  H ++K  E   ++ D    KFD+L+   ++  G+DI     + I DADK G    
Sbjct: 861 RVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGL--- 917

Query: 668 KTSLIQTIGRAAR 680
            + L Q  GR  R
Sbjct: 918 -SQLYQLRGRVGR 929


>gi|253576880|ref|ZP_04854205.1| transcription-repair coupling factor [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251843747|gb|EES71770.1| transcription-repair coupling factor [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 1177

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 147/319 (46%), Gaps = 21/319 (6%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            A  + GI+S  K QL+ G++GS +   +A + +  +RP +V+  N   A ++Y + +  
Sbjct: 18  FASTVAGINSGMKEQLISGLSGSSRQVMLAALHQETKRPLLVVTHNMFSAQKMYEDLQEA 77

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + V  +        P   +   ++ +    ++ ++I+ +    +R        +VV 
Sbjct: 78  LSPDQVLMY--------PANELVAAESAVSSPETLAQRIEVLLQ-CSRGF---RGIVVVP 125

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
                  I + E+ ++  + +++G ++E +  ++ +V+  Y+R +    RG   + G  I
Sbjct: 126 YSGIRRYIPTPEAMAEAGLTVRLGGTLELERFMAQMVELGYERVERVESRGEMSLRGGII 185

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           + +P     +A+RV +F ++++ I  F P   + +  ++ + I      +  +  +  A 
Sbjct: 186 DFYPL-TASMAYRVELFDDEVDSIRTFDPADQRSVDQIKEVFIPPCKELIATKERMGQAA 244

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           + + E+L+   I+L+K        RL + +  ++EML        I  Y   +       
Sbjct: 245 QALSEKLE---IQLDKMTDRQAKNRLREEMYKEIEMLREHVYFSEIYKYISLIYPER--- 298

Query: 457 PPPTLFEYIPEDSLLFVDE 475
              TL++Y+PED+LL +DE
Sbjct: 299 --KTLYDYMPEDTLLLLDE 315



 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H ++   E  + I D   G++DVLV  +++  G+DIP    + + DADK G    
Sbjct: 852 RVVVGHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGL--- 908

Query: 668 KTSLIQTIGRAARNVNSKVILYA 690
            + L Q  GR  R   S  I YA
Sbjct: 909 -SQLYQLRGRVGR---SNRIAYA 927


>gi|168183619|ref|ZP_02618283.1| transcription-repair coupling factor [Clostridium botulinum Bf]
 gi|237797000|ref|YP_002864552.1| transcription-repair coupling factor [Clostridium botulinum Ba4
           str. 657]
 gi|182673263|gb|EDT85224.1| transcription-repair coupling factor [Clostridium botulinum Bf]
 gi|229263299|gb|ACQ54332.1| transcription-repair coupling factor [Clostridium botulinum Ba4
           str. 657]
          Length = 1168

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 140/317 (44%), Gaps = 32/317 (10%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G++ SGK + ++ +   +    ++   + + A ++Y +   +              YY P
Sbjct: 34  GLSDSGKNYFISNIFANVDESLVIFTHSDVEARKIYEDLSLYTTEV----------YYLP 83

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV----ESY 290
              V   + Y     +I+  +   R      +L     I+V+   CI  + S     E Y
Sbjct: 84  TKEVVFYNIY-----AISGDLRWERLKVINEILSPKKKIIVT---CIESLESAYIPKELY 135

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           ++   +L +GD +E K L   L+K  Y+R DI   +G F V G  I+I+P  +    +R+
Sbjct: 136 TKYTFKLSVGDIIEIKLLEEKLIKSGYERVDIVENKGEFSVRGGIIDIYPP-ISSEPYRL 194

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             F ++I+ I  F   + + I     I I+     +     ++  +K IK +L   +++L
Sbjct: 195 EFFDDEIDSIRNFNVNSQRSIEKANNINIFPAKEIILEEENISLGLKNIKTDLDKLVLKL 254

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            K+    + ++++  I  +LE L  + S ++I+ +  Y   +       +L +YI E SL
Sbjct: 255 NKKE---DKEKIQSIINSNLEQLNESWSFENIDTFLPYFYNKT-----NSLLDYI-EGSL 305

Query: 471 LFVDESHVTIPQISGMY 487
           + +D+    + ++   Y
Sbjct: 306 IIIDDVKRCLGKLESTY 322



 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV+  H ++K  E   ++ D    KFD+L+   ++  G+DI     + I DADK G    
Sbjct: 861 RVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDADKMGL--- 917

Query: 668 KTSLIQTIGRAAR 680
            + L Q  GR  R
Sbjct: 918 -SQLYQLRGRVGR 929


>gi|296329557|ref|ZP_06872043.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305672754|ref|YP_003864425.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296153300|gb|EFG94163.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305410997|gb|ADM36115.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 1177

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 141/327 (43%), Gaps = 43/327 (13%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           ++ G+H   K QLL G++GS ++   + +     +P  ++  N   A ++  +  +    
Sbjct: 17  IINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNLYQAQKVTDDLTSLLED 76

Query: 220 NAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            +V      E   S      PE    R D            I+R+ +            I
Sbjct: 77  RSVLLYPVNELISSEIAVASPELRAQRLDV-----------INRLTNGEA--------PI 117

Query: 274 VVSSVSCIY-GIGSVESY--SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
           VV+ V+ +   +  VE +  SQM++Q  +G  +E  +L S LV+  Y+R D+    G F 
Sbjct: 118 VVAPVAALRRMLPPVEVWKNSQMLIQ--VGHDIEPDQLASRLVEVGYERSDMVSAPGEFS 175

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + G  ++I+P   E    R+ +F  +++ I  F     + I  + +I I      +    
Sbjct: 176 IRGGIVDIYPLTSEH-PVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPE 234

Query: 391 TLNTAMKYIKEELKMRL--IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
               AM+ I + L   L  ++++K+  +L A      I+YD E L    + Q +  Y  Y
Sbjct: 235 EKVRAMEKIDKGLAASLKKLKVDKQKEILHAN-----ISYDKERLSEGQTDQELVKYLSY 289

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                  E P +L +Y PE++LL +DE
Sbjct: 290 FY-----EKPASLLDYTPENTLLILDE 311



 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V Y H ++   E   ++ +   G+ DVLV   ++  G+DIP    + + DADK G  
Sbjct: 858 DAKVAYAHGKMTENELETVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|266621876|ref|ZP_06114811.1| excinuclease ABC subunit B [Clostridium hathewayi DSM 13479]
 gi|288866408|gb|EFC98706.1| excinuclease ABC subunit B [Clostridium hathewayi DSM 13479]
          Length = 69

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 47/67 (70%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI  L+KG     + + LLGVTG GKTFTMA  I+ +Q+  +++A
Sbjct: 3   FKLHSEYQPTGDQPQAIEALVKGFKEGSQFETLLGVTGFGKTFTMANAIQQLQKSTLIIA 62

Query: 201 PNKILAA 207
            NK LA+
Sbjct: 63  RNKTLAS 69


>gi|227544685|ref|ZP_03974734.1| transcription-repair coupling factor [Lactobacillus reuteri
           CF48-3A]
 gi|300909073|ref|ZP_07126536.1| transcription-repair coupling factor [Lactobacillus reuteri SD2112]
 gi|227185331|gb|EEI65402.1| transcription-repair coupling factor [Lactobacillus reuteri
           CF48-3A]
 gi|300894480|gb|EFK87838.1| transcription-repair coupling factor [Lactobacillus reuteri SD2112]
          Length = 1179

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 142/309 (45%), Gaps = 27/309 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS +T  ++ + +  QRP +V+        +L S+ +N  P N V      Y 
Sbjct: 27  QLITGISGSVRTELLSALSKEGQRPILVVTDTISHMQELASDLENLLPANRV------YQ 80

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVES 289
           +   E       T     SS N ++ R+   A  +L+     +V++S + +   I S E 
Sbjct: 81  FPVEEVLAAEVAT-----SSPNYRLQRVL--ALNALINNEPAVVIASAAGLRRNIISPEY 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           ++Q  +++K G  V+  ++   L    Y+ Q + +  G F + G  I+I+  +  D   R
Sbjct: 134 FAQSSLKIKTGGEVDPAKIRQQLSAMGYQYQKMVLRPGDFAIRGSIIDIYALN-TDNPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           + +F  +++ +  F   T + I NVE ++I   + ++ P    +T    + E L     +
Sbjct: 193 IDLFDTEVDSLRYFDASTQRSIDNVEEVQILPATDFIIP----STEFSRVYEALDTEYKK 248

Query: 410 LEKEGRLLEAQ--RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP-TLFEYIP 466
           +EKE   L A    ++Q++    E L      Q + N    L   N   P   +LF+Y+P
Sbjct: 249 VEKE---LSADDTDIKQQVANLFEPLLNALKNQHLPN--ELLEFSNLVYPAKHSLFDYLP 303

Query: 467 EDSLLFVDE 475
           +D  ++ D+
Sbjct: 304 DDGTIYFDD 312


>gi|16077123|ref|NP_387936.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221307865|ref|ZP_03589712.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312187|ref|ZP_03593992.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317120|ref|ZP_03598414.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321383|ref|ZP_03602677.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|585481|sp|P37474|MFD_BACSU RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|467444|dbj|BAA05290.1| transcription-repair coupling factor [Bacillus subtilis]
 gi|2632322|emb|CAB11831.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 1177

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 140/327 (42%), Gaps = 43/327 (13%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           ++ G+H   K QLL G++GS ++   + +     +P  ++  N   A ++  +  +    
Sbjct: 17  IINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNLYQAQKVTDDLTSLLED 76

Query: 220 NAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            +V      E   S      PE    R D            I+R+ +            I
Sbjct: 77  RSVLLYPVNELISSEIAVASPELRAQRLDV-----------INRLTNGEA--------PI 117

Query: 274 VVSSVSCIY-GIGSVESY--SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
           VV+ V+ I   +  VE +  SQM++Q  +G  +E  +L S LV+  Y+R D+    G F 
Sbjct: 118 VVAPVAAIRRMLPPVEVWKSSQMLIQ--VGHDIEPDQLASRLVEVGYERSDMVSAPGEFS 175

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + G  I+I+P   E+   R+ +F  +++ I  F     + I  + +I I      +    
Sbjct: 176 IRGGIIDIYPLTSEN-PVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPE 234

Query: 391 TLNTAMKYIKEELKMRLIEL--EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
               AM+ I   L   L +L  +K+  +L A      I++D E L    + Q +  Y  Y
Sbjct: 235 EKARAMEKIDSGLAASLKKLKADKQKEILHAN-----ISHDKERLSEGQTDQELVKYLSY 289

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                  E P +L +Y P+++LL +DE
Sbjct: 290 FY-----EKPASLLDYTPDNTLLILDE 311



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DADK G  
Sbjct: 858 DAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|146319859|ref|YP_001199570.1| transcription-repair coupling factor [Streptococcus suis 98HAH33]
 gi|145690665|gb|ABP91170.1| Transcription-repair coupling factor (superfamily II helicase)
           [Streptococcus suis 98HAH33]
          Length = 320

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 143/319 (44%), Gaps = 29/319 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I Q   G++   + QLLLG++G+ K+  MA   + +    +++   +  A +L ++    
Sbjct: 13  INQWQSGLNQSTR-QLLLGLSGTSKSLIMATAYDCLAEKIMIVTATQNDAEKLVADLTAI 71

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V      Y+++  ++  P  +     +     +ID +      +    +  +V S
Sbjct: 72  IGSENV------YNFFTDDS--PIAEFVFASKERTQSRIDSLNFLTDST---SSGILVAS 120

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
            V+C   + S E+Y    +QL++G  +E  +L+ +LV   YK+    + +G F   GD +
Sbjct: 121 IVACRVLLPSPETYKGSKIQLEVGQEIEVDKLVKNLVNIGYKKVSRVLTQGEFSQRGDIL 180

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IF    E   +R+  FG++I+ I  F   + + + N++ I I   S  +      + A 
Sbjct: 181 DIFDMQSE-TPYRIEFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYSRAS 239

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           +YI+                +E   LE++ +Y  E+L    +     +  ++L+     E
Sbjct: 240 QYIQTA--------------IEQSTLEEQQSYLREVLADMQTEYRHPDLRKFLSC--IYE 283

Query: 457 PPPTLFEYIPEDSLLFVDE 475
              TL +Y+P+ S LF+D+
Sbjct: 284 QSWTLLDYLPKSSPLFLDD 302


>gi|291482427|dbj|BAI83502.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           natto BEST195]
          Length = 1177

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 140/327 (42%), Gaps = 43/327 (13%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           ++ G+H   K QLL G++GS ++   + +     +P  ++  N   A ++  +  +    
Sbjct: 17  IINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNLYQAQKVTDDLTSLLED 76

Query: 220 NAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            +V      E   S      PE    R D            I+R+ +            I
Sbjct: 77  RSVLLYPVNELISSEIAVASPELRAQRLDV-----------INRLTNGEA--------PI 117

Query: 274 VVSSVSCIY-GIGSVESY--SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
           VV+ V+ I   +  VE +  SQM++Q  +G  +E  +L S LV+  Y+R D+    G F 
Sbjct: 118 VVAPVAAIRRMLPPVEVWKSSQMLIQ--VGHDIEPDQLASRLVEVGYERSDMVSAPGEFS 175

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + G  I+I+P   E+   R+ +F  +++ I  F     + I  + +I I      +    
Sbjct: 176 IRGGIIDIYPLTSEN-PVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPE 234

Query: 391 TLNTAMKYIKEELKMRLIEL--EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
               AM+ I   L   L +L  +K+  +L A      I++D E L    + Q +  Y  Y
Sbjct: 235 EKARAMEKIDSGLAASLKKLKADKQKEILHAN-----ISHDKERLSEGQTDQELVKYLSY 289

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                  E P +L +Y P+++LL +DE
Sbjct: 290 FY-----EKPASLLDYTPDNTLLILDE 311



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DADK G  
Sbjct: 858 DAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|255524039|ref|ZP_05391001.1| transcription-repair coupling factor [Clostridium carboxidivorans
           P7]
 gi|296186896|ref|ZP_06855297.1| transcription-repair coupling factor [Clostridium carboxidivorans
           P7]
 gi|255512326|gb|EET88604.1| transcription-repair coupling factor [Clostridium carboxidivorans
           P7]
 gi|296048610|gb|EFG88043.1| transcription-repair coupling factor [Clostridium carboxidivorans
           P7]
          Length = 1173

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 101/516 (19%), Positives = 224/516 (43%), Gaps = 71/516 (13%)

Query: 164 IHSREKVQLLLGVTG---SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           I S EK +  +G+ G   S + + +  V E + +P +V+  + + A +LY +   +  + 
Sbjct: 20  ISSIEKSKFPVGIFGLSESARGYLIDGVYEELDKPFLVLTHSDVEAKRLYEDLSLYLTNV 79

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
                     YY P   V   + Y     +I+  +   R    R +L+    I+V+   C
Sbjct: 80  ----------YYFPTKEVVFYNIY-----AISGDLRWERLKVIREMLKSGKKIIVT---C 121

Query: 281 IYGIGS----VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           I  + S    V  Y      + I D ++ + L   L++  Y++ +I   +G F + G  I
Sbjct: 122 IETLASSYIPVNLYRNYTFNISIKDILDIENLKQKLIQCGYEKVEIIDGKGQFSIRGGII 181

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +I+ S +    +R+ +FGN+++ I  F   + + I  V++I+I+     +    ++   +
Sbjct: 182 DIY-SPIAAEPYRIELFGNEVDSIRSFNLQSQRSIDKVKSIEIFPAKEMILDNESIEKGL 240

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           + ++ +LK+   +L+K       + ++Q +  +LE L    + ++I+++  Y   +    
Sbjct: 241 QGMESDLKLVCDKLKKRKDNDALENVQQEVKKNLESLRENWTFETIDSFLPYFYDKT--- 297

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              +  EY  E   + +D+      ++  +Y            + F      +N     E
Sbjct: 298 --SSFLEY-TEGYFIILDDLQRCKGKLDSVY------------FEFE-----ENYKSFLE 337

Query: 517 EWNCL-RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             N L + + ++++ +     LE+ + + ++ I + T ++ P   I  ++  + + + ++
Sbjct: 338 RGNILSKQSELLLNKSHVLESLEEKEVMTMDAIPKSTKILAPRSIINFSQITLHNYHGQM 397

Query: 576 NLAAQ-------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +L  Q       +G++I++   T+   E L   L + +I   Y           ++I D+
Sbjct: 398 DLLIQDIKDKKSKGVKIVILSGTRPRGERLVNTLRDNDIESSYK----------DVIHDI 447

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           + G+  +  G  L   G + PE  +  I  +DKE F
Sbjct: 448 QPGEVVITFGSQL--NGFEYPELKVCVI--SDKEVF 479



 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H +++  E   II D    ++D+LV   ++  G+DI     + I D+DK G    
Sbjct: 864 RVAVAHGQMQERELENIIVDFMKNEYDILVATTIIETGMDIQNVNTMIIYDSDKMGL--- 920

Query: 668 KTSLIQTIGRAAR 680
            + L Q  GR  R
Sbjct: 921 -SQLYQLRGRVGR 932


>gi|321313725|ref|YP_004206012.1| transcription-repair coupling factor [Bacillus subtilis BSn5]
 gi|320019999|gb|ADV94985.1| transcription-repair coupling factor [Bacillus subtilis BSn5]
          Length = 1177

 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 140/327 (42%), Gaps = 43/327 (13%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           ++ G+H   K QLL G++GS ++   + +     +P  ++  N   A ++  +  +    
Sbjct: 17  IINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNLYQAQKVTDDLTSLLED 76

Query: 220 NAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            +V      E   S      PE    R D            I+R+ +            I
Sbjct: 77  RSVLLYPVNELISSEIAVASPELRAQRLDV-----------INRLTNGEA--------PI 117

Query: 274 VVSSVSCIY-GIGSVESY--SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
           VV+ V+ I   +  VE +  SQM++Q  +G  +E  +L S L++  Y+R D+    G F 
Sbjct: 118 VVAPVAAIRRMLPPVEVWKSSQMLIQ--VGHDIEPDQLASRLIEVGYERSDMVSAPGEFS 175

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + G  I+I+P   E+   R+ +F  +++ I  F     + I  + +I I      +    
Sbjct: 176 IRGGIIDIYPLTSEN-PVRIELFDTEVDSIRNFNSDDQRSIETLTSINIGPAKELIIRPE 234

Query: 391 TLNTAMKYIKEELKMRLIEL--EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
               AM+ I   L   L +L  +K+  +L A      I++D E L    + Q +  Y  Y
Sbjct: 235 EKARAMEKIDSGLAASLKKLKADKQKEILHAN-----ISHDKERLSEGQTDQELVKYLSY 289

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                  E P +L +Y P+++LL +DE
Sbjct: 290 FY-----EKPASLLDYTPDNTLLILDE 311



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DADK G  
Sbjct: 858 DAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|297528423|ref|YP_003669698.1| transcription-repair coupling factor [Geobacillus sp. C56-T3]
 gi|297251675|gb|ADI25121.1| transcription-repair coupling factor [Geobacillus sp. C56-T3]
          Length = 1177

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 139/317 (43%), Gaps = 23/317 (7%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           +++G+H R K QL+ G++GS ++  ++ + +   RP +V++ N   A ++Y +  +    
Sbjct: 17  IIEGLHVRLKEQLVAGLSGSARSVFISTLYKETGRPLLVVSHNLFQAQKMYDDLVSLLGP 76

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
             V +  S  +    E  V   +   ++       ++ M H A     +    +VV  V+
Sbjct: 77  EDV-FLYSMNEVIAAEMAVASPELKAQR-------LEIMNHWA-----QGGKGVVVCPVA 123

Query: 280 CIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
            +  +    S + Q +    +G   + +      V+  YKR       G F V G  I+I
Sbjct: 124 GLRRLLPPPSLWKQYLFTFSVGQEFDVERCKQKFVQMGYKRVGTVSAPGEFSVRGGIIDI 183

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           +P  +E + +R+ +F  +IE I  F P   +    +E I I      +    T    ++ 
Sbjct: 184 YPLTVE-LPYRIELFDTEIESIRTFTPDDQRSQGQIERIMIGPADEIILDGETRRRGIER 242

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           I+  L   L  ++ E      QR+ + I  +LE L      Q IE   +Y++     E  
Sbjct: 243 IEAGLASSLETMKDEA---AKQRMYEHIHAELEQLR---EGQEIEQQYKYMSLFY--EKV 294

Query: 459 PTLFEYIPEDSLLFVDE 475
            +L +Y+PED +L +DE
Sbjct: 295 ASLLDYLPEDGVLLMDE 311



 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y+H  +   E    I     G++DVLV   ++  G+DIP    + + DAD+ G    
Sbjct: 860 RVTYVHGRMSETELESTILAFLEGQYDVLVTTTIIETGIDIPNVNTLIVYDADRMGL--- 916

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 917 -SQLYQLRGRVGRS 929


>gi|212637897|ref|YP_002314417.1| transcription-repair coupling factor (helicase, mfd) [Anoxybacillus
           flavithermus WK1]
 gi|212559377|gb|ACJ32432.1| Transcription-repair coupling factor (helicase, mfd) [Anoxybacillus
           flavithermus WK1]
          Length = 1189

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/323 (19%), Positives = 147/323 (45%), Gaps = 25/323 (7%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A +  + +G+ +  K QL+ G++GS ++  ++ + E  +RP  ++  N   A ++Y +  
Sbjct: 31  ADMQSVAEGVRNGLKEQLVTGLSGSARSVFISSLYEDTERPLCIVTHNLFQAQKIYDDLI 90

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI-NEQIDRMRHSATRSLLERNDCI 273
                             + E ++   +  I  E ++ + ++   R        ER   I
Sbjct: 91  QLID--------------EEEVFLYPVNELIAAELAVASPELRAQRLEVLNYWCERKKGI 136

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           V++ ++ +   +   + + +  +  ++G+ ++ +  L   V   Y+R  +    G F V 
Sbjct: 137 VIAPIAALRRLLPPKDVWQRYQLHFRVGEQMDVEHCLKQFVAMGYERVSVVSTPGEFSVR 196

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  I+I+P   E + +R+ +F  +IE I  F     + +  ++ + I   +  +  +  +
Sbjct: 197 GGIIDIYPLTAE-LPYRIELFDVEIESIRTFSVDDQRSVAEIDEVLIGPATELIVEQQHI 255

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
           N A++ ++ +L   L  +  E       RL + ++++LE L+   + +SIE   +Y +  
Sbjct: 256 NEAIQRLEAQLHDTLQHIHDEKT---KNRLYEHVSFELEQLK---NGKSIEEMYKYFSLF 309

Query: 453 NPGEPPPTLFEYIPEDSLLFVDE 475
            P     +L +YIPE  ++ +DE
Sbjct: 310 YPS--AASLLDYIPEHGVVIIDE 330



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H  +   E   ++     G++DVLV   ++  G+DIP    + + DADK G  
Sbjct: 877 DARVTYAHGRMSEHELEAVMLAFLEGQYDVLVSTTIIETGVDIPNVNTLIVYDADKMGL- 935

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 936 ---SQLYQLRGRVGRS 948


>gi|295093547|emb|CBK82638.1| transcription-repair coupling factor [Coprococcus sp. ART55/1]
          Length = 1188

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 137/338 (40%), Gaps = 27/338 (7%)

Query: 175 GVTGSG--KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           G TG G  + F M    +      +++  N   A +LYS+ K                +Y
Sbjct: 33  GTTGEGTDRVFMMQGFGDDAS-VRLILTYNDRRAEELYSDMK----------------FY 75

Query: 233 QPEAYV-PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESY 290
             + Y+ P  D            I R R    R L     C ++++V  +Y  I ++   
Sbjct: 76  GRDVYMYPAKDILFFSADVHGNAITRRRMEVLRRLATGEPCTIIATVDAMYDKIPALSYM 135

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            + ++ +    S++  EL   LV   Y++ D     G F + G  ++IFP   E+  +R+
Sbjct: 136 KKYVINIHAAQSLDLDELKGKLVDLGYEKTDSVEEPGQFAIRGGIVDIFPL-TEECPYRI 194

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            M+ ++++ I  F   + + I NV+ + IY     V  +  ++  +  ++ ELK    +L
Sbjct: 195 DMWDDEVDTIKTFDAESQRSIENVDELVIYPAGEMVLSKERIDRGIHRLEAELKPYAKKL 254

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
           +   +     R++  I    E L    +   +++Y  Y           +L + +PED+ 
Sbjct: 255 KDSFQTEAYARIKGEIATLKEQLTEFSAIYGVDSYVDYFYS-----DTVSLVDCLPEDAY 309

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
           +F+DE+     +  G  +          E G+ LP  M
Sbjct: 310 IFIDETKKVTEKADGSEKSFLSSLTHRLEGGYILPGQM 347


>gi|157690837|ref|YP_001485299.1| transcription-repair coupling factor [Bacillus pumilus SAFR-032]
 gi|157679595|gb|ABV60739.1| transcription-repair coupling factor [Bacillus pumilus SAFR-032]
          Length = 1177

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 134/322 (41%), Gaps = 33/322 (10%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           +  G+    K QLL G++GS ++   A + + ++RP  ++  N   A ++  +  +    
Sbjct: 17  IFNGLKEGLKEQLLAGLSGSVRSLFTAAISDELKRPMFIVTHNLYQAQKVTDDLASVMSD 76

Query: 220 NAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            +V      E   S      PE    R D            ++R+ +         N  I
Sbjct: 77  RSVLLYPVNELIASEIAVASPELRAQRLDV-----------LNRLANG-------ENPII 118

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V  + +    +  VE + +  + LK+G+ ++ +     LV+  Y R  +    G F V G
Sbjct: 119 VTPAAAVRRMLPPVELWKESQIHLKLGEEIDLEAFSKQLVQIGYDRTSMVAAPGDFSVRG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+I+ S  ED   R+ +F  +++ I  F+  T + +  ++ IKI      +   P   
Sbjct: 179 GIIDIY-SLTEDHPIRIELFDTEVDSIRTFHSDTQRSLETLQEIKIGPAKELIVRGPERV 237

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A++ + + L   L +   +    + + L Q IT D E L      Q +  Y  Y     
Sbjct: 238 RAIEQLDQGLANSLKKFNSDQ---QKELLHQHITADREKLLEGIVTQEMTKYLSYFY--- 291

Query: 454 PGEPPPTLFEYIPEDSLLFVDE 475
             E P +L +Y  +D+++ +DE
Sbjct: 292 --EKPASLLDYTSQDTIIILDE 311



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V Y H ++   E   ++ +   G+ DVLV   ++  G+DIP    + + DADK G  
Sbjct: 858 DAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDIPNVNTLIVHDADKMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|188584709|ref|YP_001916254.1| transcription-repair coupling factor [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349396|gb|ACB83666.1| transcription-repair coupling factor [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 1196

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 133/312 (42%), Gaps = 21/312 (6%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           R   Q++ G++GS     +A +  A  RP  ++  +   A  LYS+         V    
Sbjct: 27  RSTKQMVSGISGSEFPLILAGLFRAYGRPITLITYDNYRAESLYSDLVTLLDKEQV---- 82

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIG 285
               Y  PE  V   +   +     NE     R    +++L +   + + S+ S    + 
Sbjct: 83  ----YIYPEHQVYPFELAWQSRDVNNE-----RAQVLQAMLSKKSAVYIFSLKSAKEKLS 133

Query: 286 SVESYSQMIVQLKIGDSVEQKELLS-SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
             +   Q  + L++G+      +++  L    Y+   +   +G F   G  I++FP   E
Sbjct: 134 PAQVVKQTFLNLEVGNEKLSPTMIAEKLTGLGYENTSMVEQKGQFSHRGGIIDVFPVASE 193

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT-LNTAMKYIKEEL 403
            +  R+  F ++IE I  F   T + ++   ++ +   S  V    T L+ A+  +  E 
Sbjct: 194 -LPVRIEFFDDEIESIRAFDLATQRSLKEYNSLVVGPGSQLVIGDNTNLSQALNQLTREF 252

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           +++  +L K+G    ++ LE+RI  DL  LE   S      Y  Y   +N G    T+ +
Sbjct: 253 ELQKGKLMKDGITDRSEELEERINRDLSSLENGISLPHFHRYLSYFYPKNYG----TIID 308

Query: 464 YIPEDSLLFVDE 475
           ++P +SL +VDE
Sbjct: 309 FLPTNSLFWVDE 320



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           ++A+++ +++ +  + V +     K LER+ +  D   GK+DVLV  +++  GLDI    
Sbjct: 860 KVAKEVADWVPDAKVGVAHGQMPEKQLERVML--DFYEGKYDVLVSTSIVEAGLDIQNVN 917

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAAR 680
            + I +AD+ G L     L   +GR+ R
Sbjct: 918 TIIIYNADRMG-LSQPYQLRGRVGRSNR 944


>gi|323701604|ref|ZP_08113276.1| transcription-repair coupling factor [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533377|gb|EGB23244.1| transcription-repair coupling factor [Desulfotomaculum nigrificans
           DSM 574]
          Length = 1169

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 107/513 (20%), Positives = 210/513 (40%), Gaps = 55/513 (10%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            LL+G+    + Q++ G+ GS +++  A +    +R  +V+AP +  AA L  +  +  P
Sbjct: 16  HLLQGLEKGFRQQMVFGLAGSQRSYLFAGLAHT-RRSVLVVAPGETEAAALADDLTSLLP 74

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
             +V+ F  +     P   +  ++  + +   + EQ+     SA   L+     +V S  
Sbjct: 75  DLSVQLFPVWQ--MLPYQVLAHSNEVLAQRLRVLEQL-----SAGEPLV-----VVTSPE 122

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           + +  +   + +S+  + L +G  V+ +++   L+K  Y+R D+    G F   G  I+I
Sbjct: 123 ALLRRLTPPDIFSRAKLSLSLGQRVDLEKMRQDLIKMGYERVDLVEGPGQFSSRGGIIDI 182

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP        R+  F ++++ I  F     + +  ++ I I      V          + 
Sbjct: 183 FPMTAARPV-RIEFFDDEVDSIRHFDVDNQRSLDKLKGISISPCRELVLTPAAWQRGKEN 241

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
            + E K +L +L++ G +    +L  +    L+ +      + +E    +         P
Sbjct: 242 YEAEYKNQLKKLQRSGSVDAVHQLSSQGAMLLDQIHGQIPFEGMEQLHSFFY-----PEP 296

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
            TL +Y  E  LL VD+       +  + R        L   G  LP   ++    + +W
Sbjct: 297 VTLLDYFAEKPLLLVDDPIRFKEVVDTILRERNETYTDLLAKGKVLPGQFNS----YLDW 352

Query: 519 -NCLRPTTIVVSATPGSWELEQCQGIIVE------QIIRPTGLVDPPVE-IRSARTQVED 570
              L P             LE+CQGI         Q I+   +V+ P + + S     E 
Sbjct: 353 PKLLAP-------------LERCQGIYCSFLPRNPQYIKAQNVVNFPAKAMHSFLGHYEV 399

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + DEI    ++G  ++L V ++  A +L + L  ++ +V   H  +K L       D  +
Sbjct: 400 LADEIRHWRRRGYAVVLLVSSEERATNLLQLL--KDAKVDAFH--IKQL-------DNEV 448

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            + +V++ +  L  G ++    L  I D +  G
Sbjct: 449 KEGNVVITVGQLANGFELISARLAVITDQEIFG 481


>gi|225028227|ref|ZP_03717419.1| hypothetical protein EUBHAL_02499 [Eubacterium hallii DSM 3353]
 gi|224954539|gb|EEG35748.1| hypothetical protein EUBHAL_02499 [Eubacterium hallii DSM 3353]
          Length = 1187

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 126/305 (41%), Gaps = 22/305 (7%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A +LY +  +FF  N V Y              P  D         +  I+R R    + 
Sbjct: 76  AKELYQDL-SFFDPNTVLY--------------PSRDVLFYSADVHSNHIERQRMDILKK 120

Query: 266 LLERNDCIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           ++E     +V+ +      +   E + +  + +     ++   L   L +  Y+   +  
Sbjct: 121 IVEGKPLTIVACLDVFMEKMIPFEEFKEHCLTIDFESIIDTDALKLKLSELGYENSGLVE 180

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
             G F + G  I+IFP   E++  R+ ++G++++ I  F   T + +  ++ +++Y  + 
Sbjct: 181 APGQFGIRGGIIDIFP-LTEELPVRIELWGDEVDSIRSFDTETQRSVEKLDEVQVYPATE 239

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
            +  R  +  A++ +KEE K +    +K  R  E +RL +      E L + G+ +  E 
Sbjct: 240 MILSRNKIGEAVRRMKEEYKKQEEAFKKRKRFAEKERLRKMTVRTEEELLSFGTAEGSEA 299

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
              Y       E   +  EY+PE++L F+DE H  + +        F    +  E G+ L
Sbjct: 300 LLSYFY-----EKTVSFLEYLPENTLFFIDEPHRVLEKGKTYEEEFFLCMQSRLEGGYVL 354

Query: 505 PSCMD 509
           P   D
Sbjct: 355 PGQAD 359


>gi|302876604|ref|YP_003845237.1| transcription-repair coupling factor [Clostridium cellulovorans
           743B]
 gi|307687278|ref|ZP_07629724.1| transcription-repair coupling factor [Clostridium cellulovorans
           743B]
 gi|302579461|gb|ADL53473.1| transcription-repair coupling factor [Clostridium cellulovorans
           743B]
          Length = 1173

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/317 (19%), Positives = 146/317 (46%), Gaps = 25/317 (7%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           + G+  S + F +  + E + +  +V+  + + A  LY + + F P   V YF       
Sbjct: 32  IYGLADSSRAFALFSIFEKLDQTMLVLTSSDVEARNLYEDLQFFTPK--VYYF------- 82

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYS 291
                 P  +       +++  +   R    + +   N  I+VSS+  +      +E   
Sbjct: 83  ------PTKEVVFYNIEAVSGDLRWERLKVLKEIKSNNKKIIVSSIENLAPNYCPIEYIE 136

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q   +LK+ D++   +    LV+  Y+R +I   RG F + G  I++FP     V +R+ 
Sbjct: 137 QSFFKLKLNDTLITADFSMKLVQSGYERVEIIDARGQFSIRGGIIDVFPPT-SSVPFRIE 195

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL-KMRLIEL 410
           +FG++I+ I  F   + + I  V  I+++     +     +   ++ I+++L K+  +  
Sbjct: 196 LFGDEIDSIRTFNLESQRSIERVTEIELFPAKEMILTNELVEKGVERIEKDLEKVLQVAK 255

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
           +++ + LE +++   I  ++E L+   + ++I+++  Y       E P +  +Y  +D +
Sbjct: 256 KRDDKELE-EKIRFSINRNIESLKERWTFETIDSFLTYFY-----EKPSSFLDYF-KDCM 308

Query: 471 LFVDESHVTIPQISGMY 487
           + ++++  T  ++  +Y
Sbjct: 309 ICIEDTDRTSGKLDSVY 325



 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+   H ++   E  E++R     ++D+LV   ++  G+DI     + I DADK G    
Sbjct: 865 RIIVAHGQMAEKELEEVMRAFMNQEYDILVSTTIIETGIDIQNANTMIIYDADKMGL--- 921

Query: 668 KTSLIQTIGRAAR 680
            + L Q  GR  R
Sbjct: 922 -SQLYQLRGRVGR 933


>gi|147676451|ref|YP_001210666.1| helicase subunit of the DNA excision repair complex [Pelotomaculum
           thermopropionicum SI]
 gi|146272548|dbj|BAF58297.1| helicase subunit of the DNA excision repair complex [Pelotomaculum
           thermopropionicum SI]
          Length = 541

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 104/535 (19%), Positives = 210/535 (39%), Gaps = 55/535 (10%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIE-AMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           L++G+ +  + Q + G++GS  ++  A +   A   P +V+ P +  A Q+  E     P
Sbjct: 17  LIRGLENNFRQQAVFGLSGSQTSYLYAGLAGVAAPLPVLVVTPGEREACQMADEIAGLLP 76

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
             AV+ F             P       +  + +++++  R     SL+     +V++  
Sbjct: 77  GAAVKLF-------------PVWQLLPFQIIAHSKEVEAQRLQVLESLVRGERAVVIAPA 123

Query: 279 SCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             +   +   + + +  ++L  G+   + +L+  L+   Y+R  +   RG F + G  ++
Sbjct: 124 EAVLRRLVPPQIFGRAALRLATGERAGRDDLIRRLLAMGYERVGLVEGRGQFCLRGGILD 183

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           +FP        R+  F ++++ I  F   T +    ++ ++I A    +          +
Sbjct: 184 VFPMTAHRPV-RIEFFDDEVDSIRRFNAATQRSEEKIDEVEIGAARELIVEDKAWENFRR 242

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            +K+E + + ++LEK G    A++L ++     E     G    IEN+  Y         
Sbjct: 243 ALKKEYRAQALKLEKAGETGAARQLAEKFAETAE--GACGYFNGIENFLPYFY-----RE 295

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
             T+ +Y+P  + + VD+       I  + R      + L   G  LPS      L +  
Sbjct: 296 VITILDYLPAGAPVIVDDPVRVKEMIDSIQRERMETYSDLLSRGRVLPSQF----LAYAG 351

Query: 518 WNCL-----RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDV 571
           W+ +     R   I  S  P                +RP      P + + S    ++ +
Sbjct: 352 WSDIQGGLSRHPVIYSSLLPRQ-----------PDFVRPQQTFSLPWKAMPSFLGNLKML 400

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +EI    + G   ++ V +   A+ +   L +  +   Y  S             +R G
Sbjct: 401 AEEIRHWRKSGYATVILVSSHHRAQQILSSLKDHGVDAFYASSPEG---------HVRSG 451

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             +VLV +  L  G ++P+C L  + + D  G  R      + +GR A  V+ +V
Sbjct: 452 --NVLVAVGSLSGGFELPDCRLAVVTERDIYGQFRRVKRERKRVGRMAPFVDLRV 504


>gi|56418583|ref|YP_145901.1| transcription-repair coupling factor [Geobacillus kaustophilus
           HTA426]
 gi|56378425|dbj|BAD74333.1| transcription-repair coupling factor [Geobacillus kaustophilus
           HTA426]
          Length = 1177

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 138/319 (43%), Gaps = 27/319 (8%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF-P 218
           +++G+H R K QL+ G++GS ++  ++ + +   RP +V++ N   A ++Y +  +   P
Sbjct: 17  IIEGLHVRLKEQLVAGLSGSARSVFISTLYKETGRPLLVVSHNLFQAQKMYDDLVSLLGP 76

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI-NEQIDRMRHSATRSLLERNDCIVVSS 277
            +   Y V               +  I  E ++ + ++   R       ++    +VV  
Sbjct: 77  EDVFLYSV---------------NEVIAAEMAVASPELKAQRLEIMNHWVQGGKGVVVCP 121

Query: 278 VSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           V+ +  +    S + Q +    +G   + +      V+  YKR       G F V G  I
Sbjct: 122 VAGLRRLLPPPSLWKQYLFTFSVGQEFDVERCKQKFVQMGYKRVGTVSAPGEFSVRGGII 181

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +I+P   E + +R+ +F  +IE I  F P   +    +E I I      +    T    +
Sbjct: 182 DIYPLTAE-LPYRIELFDTEIESIRTFTPDDQRSQGQIERIMIGPADEIILDGETRRRGI 240

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           + I+  L   L  ++ E      QR+ + I  +LE L      Q IE   +Y++     E
Sbjct: 241 ERIEAGLASSLETMKDEA---AKQRMYEHIHAELEQLR---EGQEIEQQYKYMSLFY--E 292

Query: 457 PPPTLFEYIPEDSLLFVDE 475
              +L +Y+PED +L +DE
Sbjct: 293 KVASLLDYLPEDGVLLMDE 311



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y+H  +   E    I     G++DVLV   ++  G+DIP    + + DAD+ G    
Sbjct: 860 RVTYVHGRMSETELESTILAFLEGQYDVLVTTTIIETGIDIPNVNTLIVYDADRMGL--- 916

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 917 -SQLYQLRGRVGRS 929


>gi|261417548|ref|YP_003251230.1| transcription-repair coupling factor [Geobacillus sp. Y412MC61]
 gi|319765205|ref|YP_004130706.1| transcription-repair coupling factor [Geobacillus sp. Y412MC52]
 gi|261374005|gb|ACX76748.1| transcription-repair coupling factor [Geobacillus sp. Y412MC61]
 gi|317110071|gb|ADU92563.1| transcription-repair coupling factor [Geobacillus sp. Y412MC52]
          Length = 1177

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 139/318 (43%), Gaps = 25/318 (7%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF-P 218
           +++G+H R K QL+ G++GS ++  ++ + +   RP +V++ N   A ++Y +  +   P
Sbjct: 17  IIEGLHVRLKEQLVAGLSGSARSVFISTLYKETGRPLLVVSHNLFQAQKMYDDLVSLLGP 76

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
            +   Y V+          V   +  +       ++++ M H A     +    +VV  V
Sbjct: 77  EDVFLYSVN---------EVIAAEMAVASPELKAQRLEIMNHWA-----QGGKGVVVCPV 122

Query: 279 SCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           + +  +    S + Q +    +G   + +      V+  YKR       G F V G  I+
Sbjct: 123 AGLRRLLPPPSLWKQYLFTFFVGQEFDVERCKQKFVQMGYKRVGTVSAPGEFSVRGGIID 182

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           I+P   E + +R+ +F  +IE I  F P   +    +E I I      +    T    ++
Sbjct: 183 IYPLTAE-LPYRIELFDTEIESIRTFTPDDQRSQGQIERIMIGPADEIILDGETRRRGIE 241

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            I+  L   L  ++ E      QR+ + I  +LE L      Q IE   +Y++     E 
Sbjct: 242 RIEAGLASSLETMKDEA---AKQRMYEHIHAELEQLR---EGQEIEQQYKYMSLFY--EK 293

Query: 458 PPTLFEYIPEDSLLFVDE 475
             +L +Y+PED +L +DE
Sbjct: 294 VASLLDYLPEDGVLLMDE 311



 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y+H  +   E    I     G++DVLV   ++  G+DIP    + + DAD+ G    
Sbjct: 860 RVTYVHGRMSETELESTILAFLEGQYDVLVTTTIIETGIDIPNVNTLIVYDADRMGL--- 916

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 917 -SQLYQLRGRVGRS 929


>gi|205371994|ref|ZP_03224812.1| transcription-repair coupling factor [Bacillus coahuilensis m4-4]
          Length = 1181

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 137/325 (42%), Gaps = 27/325 (8%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           D  + ++ + +G+H     QL+ G++GSG++  +A V +   R  +V+  N   A +L  
Sbjct: 10  DVQSIVSGIQEGLHE----QLIAGLSGSGRSLFIASVFKDTNRQTVVVTHNLFQAQKLQE 65

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +        +V        Y  P   +   +  I       ++ID + H A+      + 
Sbjct: 66  DLIALLGEESV--------YLYPANELIAAELSISSPELKAQRIDTLYHMASG-----HK 112

Query: 272 CIVVSSVSCIYGIGSVESYSQMI-VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            I +  ++ I  +   +   +M  + L +G+ +    LL+SLV+  Y R D+    G F 
Sbjct: 113 GIYIVPMAGIRKLLPPKKEWEMFQITLTVGEDINVSSLLTSLVQTGYTRADMVSAPGEFS 172

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V G  I+I+P    D   R+ +F  +++ I  F     + I  ++T+ I   +  V    
Sbjct: 173 VRGGIIDIYPLTSTDPV-RIELFDTEVDSIRTFSAEDQRSIDKLQTVLIPPATELVLTSQ 231

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
            +      +  EL + L +L+        ++L Q I YDLE L        +  YS    
Sbjct: 232 DIARLGDKLATELALSLKKLKSTK---AKEKLSQNIGYDLERLRNGQLPDDLFKYSSLAY 288

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDE 475
                E P +L +Y+  + ++  DE
Sbjct: 289 -----EEPSSLLDYVASNGIVIFDE 308



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y H  +   E   +I     G+ DVLV   ++  G+DIP    + + DAD+ G    
Sbjct: 858 RVVYAHGRMTENELESVILSFLEGEADVLVTTTIIETGVDIPNANTLIVHDADRMGL--- 914

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 915 -SQLYQLRGRVGRS 927


>gi|194018017|ref|ZP_03056624.1| transcription-repair coupling factor [Bacillus pumilus ATCC 7061]
 gi|194010354|gb|EDW19929.1| transcription-repair coupling factor [Bacillus pumilus ATCC 7061]
          Length = 1177

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 134/322 (41%), Gaps = 33/322 (10%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           +  G+    K QLL G++GS ++   A + + ++RP  ++  N   A ++  +  +    
Sbjct: 17  IFNGLKEGLKEQLLAGLSGSVRSLFTAAISDELKRPMFIVTHNLYQAQKVTDDLASVMSD 76

Query: 220 NAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            +V      E   S      PE    R D            ++R+ +         N  I
Sbjct: 77  RSVLLYPVNELIASEIAVASPELRAQRLDV-----------LNRLANG-------ENPII 118

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V  + +    +  VE + +  + LK+G+ ++ +     LV+  Y R  +    G F V G
Sbjct: 119 VTPAAAVRRMLPPVELWKESQIHLKLGEEIDLEAFSKQLVQIGYDRTSMVAAPGDFSVRG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+I+ S  ED   R+ +F  +++ I  F+  T + +  ++ IKI      +   P   
Sbjct: 179 GIIDIY-SLTEDHPIRIELFDTEVDSIRTFHSDTQRSLETLQEIKIGPAKELIVRGPERV 237

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A++ + + L   L +   +    + + L Q I+ D E L      Q +  Y  Y     
Sbjct: 238 RAIEQLDQGLAKSLKKFNSDQ---QKELLHQHISADREKLLEGIVTQEMTKYLSYFY--- 291

Query: 454 PGEPPPTLFEYIPEDSLLFVDE 475
             E P +L +Y  +D+++ +DE
Sbjct: 292 --EKPASLLDYTSQDTIIILDE 311



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V Y H ++   E   ++ +   G+ DVLV   ++  G+DIP    + + DADK G  
Sbjct: 858 DAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDIPNVNTLIVHDADKMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|196250768|ref|ZP_03149455.1| transcription-repair coupling factor [Geobacillus sp. G11MC16]
 gi|196209718|gb|EDY04490.1| transcription-repair coupling factor [Geobacillus sp. G11MC16]
          Length = 1177

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 135/316 (42%), Gaps = 21/316 (6%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           +++GIH+R K QL+ G++GS ++  ++ + +   RP +V+A N   A ++Y +  +    
Sbjct: 17  IIEGIHARLKEQLVAGLSGSARSVFISTLYKETGRPMLVVAHNLFQAQKIYDDLVSLLGS 76

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           + V +  S  +    E  V   +   ++       ++ M H A     E    +V     
Sbjct: 77  DDV-FLYSVNEVIAAEMAVASPELKAQR-------LEIMNHWAQ----EGKGVVVCPVAG 124

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
               +  +  +   +    +G  ++ +      V+  YKR       G F + G  ++I+
Sbjct: 125 LRRLLPPLSLWKHYLFTFSVGQELDLERYKQLFVEMGYKRVATVSAPGEFSIRGGIVDIY 184

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P   E + +R+ +F  +IE I  F P   +    V+ + I      +         ++ I
Sbjct: 185 PLTAE-LPYRIELFDTEIESIRTFTPDDQRSHEQVDRVMIGPADEIILNEEARQRGIERI 243

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
           +  L   L  ++ +      QR+ + I  +LE L      Q IE   +Y++     E   
Sbjct: 244 EAGLAASLENIKDDA---AKQRMYEHIHAELEQLR---EGQEIEQQYKYMSLFY--EKAA 295

Query: 460 TLFEYIPEDSLLFVDE 475
           +L +Y+PED +L +DE
Sbjct: 296 SLLDYLPEDGVLLMDE 311



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV + H  +   E    I     G++DVLV   ++  G+DIP    + + DAD+ G    
Sbjct: 860 RVTFAHGRMSEAELESTILAFLEGQYDVLVTTTIIETGVDIPNVNTLIVYDADRMGL--- 916

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 917 -SQLYQLRGRVGRS 929


>gi|83588954|ref|YP_428963.1| transcription-repair coupling factor [Moorella thermoacetica ATCC
           39073]
 gi|83571868|gb|ABC18420.1| transcription-repair coupling factor [Moorella thermoacetica ATCC
           39073]
          Length = 1183

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 106/503 (21%), Positives = 204/503 (40%), Gaps = 59/503 (11%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G+    K   +A +++    P +V+ P    A +L ++ ++F+P   +       DY 
Sbjct: 32  LYGLPEGMKGLWLAAMLDEFN-PILVVTPGSEEAQRLAADIESFWPGEGI-------DYL 83

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
            P   +P  + Y        +++  +    T  +  R   +VV     +  +   ++   
Sbjct: 84  PPSELLP-LEVYTPSPELAAQRLKVL----TNLVSGRTRILVVPVEDLLRKLPPPDTLRH 138

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
            +  L++G  ++++ LL  L    Y+R+++    G   V G  I+IFP   E+   R+ +
Sbjct: 139 SLQSLEVGQIIDREALLQKLTGLGYRREEVVEAPGQLAVRGGIIDIFPLGAEEPV-RLEL 197

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG++I+ +  F P++ + + ++  I +   +  V P P L   ++ +K E       L +
Sbjct: 198 FGDEIDSLRRFDPVSQRSVADLRAI-VVGPAQEVLPPPDLGPGLETLKAEFSQTYATL-R 255

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           + +   A+ L+ R+   + MLE             +   R       TLFEY     LL 
Sbjct: 256 QRQPQAARELKDRVQELIAMLEAGSWPGGSSQLQPFFYPRQ-----ATLFEYFQRQPLLV 310

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEY---GFRLPS----CMDNRPLR--FEEWNCLRP 523
           +D+    + +   M R +  R     +    G  LPS     +D+  L   ++ +  L  
Sbjct: 311 LDDPARLLEE---MRRREQQRLGIFTDMLAAGLALPSQGQAYLDSADLERLWQRYQRLY- 366

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            +++    PGS       GI  +              I + + ++  V +E+    ++G 
Sbjct: 367 FSLLPRRVPGS-NPRPAVGISAQT-------------IPAFQGKLGLVVEELTRWRREGY 412

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RI+L V        L + L E+ I     H E +            LG+ +V++    LR
Sbjct: 413 RIILMVADPNRVVALRQALAEQGIEA-LTHPEARDT----------LGRGEVIMVSGRLR 461

Query: 644 EGLDIPECGLVAILDADKEGFLR 666
           +G   PE  L  I D +  G +R
Sbjct: 462 QGFTWPEMRLAIIGDTEIYGPIR 484


>gi|251794075|ref|YP_003008806.1| transcription-repair coupling factor [Paenibacillus sp. JDR-2]
 gi|247541701|gb|ACS98719.1| transcription-repair coupling factor [Paenibacillus sp. JDR-2]
          Length = 1175

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 148/369 (40%), Gaps = 49/369 (13%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN- 215
           +  ++ G+    + Q++ G+ GS +   +A V + + RP +V+  N   A ++  + +  
Sbjct: 14  VQSIIAGVRKGMREQMISGLAGSSRQVLVAAVKDDLDRPLLVVTHNMYAAQKIAEDLQEC 73

Query: 216 -------FFPHN---AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
                   +P N   A E  +S      PE    R D  I+                   
Sbjct: 74  ISADDVLLYPANELVAAEAAIS-----SPETLAQRMDVLIK------------------- 109

Query: 266 LLERNDCIVVSSVSCI---YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           L E    IVV   S I     I  V S +++++  K+GD++E    L  +    Y R D 
Sbjct: 110 LSEGFRGIVVVPFSGIRRYQPIKGVMSDAKILI--KVGDTIELDGFLRQMTGLGYIRADR 167

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
              +G   V G  ++ +P   E +A+R+  FG++++ I  F P   + + N++T  +   
Sbjct: 168 VESKGEMSVRGGIVDFYPLTAE-LAYRIEWFGDEVDSIRTFDPSDQRSLDNLQTFTVTPC 226

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
              V  +   + A ++    L     +L+K    +   RL Q I  ++E L        I
Sbjct: 227 QEIVADQRRFSAAAEHAATLLAQ---QLDKMTDRMAKDRLRQEIGGEIEKLREHVYFPEI 283

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
             Y   L          T+ +Y+P+D++L +DE    I     + R +      L   G 
Sbjct: 284 YKYISLLYPER-----QTILDYMPDDTVLILDEPTRLIETGRQLERDEAEWSTHLLSNGK 338

Query: 503 RLPSCMDNR 511
            LPS M  R
Sbjct: 339 SLPSFMLAR 347



 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           +MAE +   + +  + V +     + LE+   I D   G+ DVLV  +++  G+DIP   
Sbjct: 835 QMAEQINALVPDAKVAVGHGQMSEQELEKT--ILDFLDGESDVLVSTSIIETGVDIPNVN 892

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            + + DADK G     + L Q  GR  R   S  I YA
Sbjct: 893 TLIVHDADKMGL----SQLYQLRGRVGR---SNRIAYA 923


>gi|240144343|ref|ZP_04742944.1| transcription-repair coupling factor [Roseburia intestinalis L1-82]
 gi|257203687|gb|EEV01972.1| transcription-repair coupling factor [Roseburia intestinalis L1-82]
          Length = 1176

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 111/509 (21%), Positives = 199/509 (39%), Gaps = 56/509 (11%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           L  G+H    +  + G   + K   M  V        IV    +  A ++Y E++ F P 
Sbjct: 17  LSAGVHDLRGIAQISGCIDAAKPHIMYSVNNGSGNRIIVTFQEQ-RAKEIYEEYRFFDP- 74

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV- 278
                           AY P  D    +       +   R +A + L E + C ++++  
Sbjct: 75  --------------KAAYYPAKDILFYQSDIRGNVLTAERINALKMLAEESSCTIITTFD 120

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           S +  +   E + Q + ++ +GD +  +EL   LV+  Y++       G F V G  ++I
Sbjct: 121 SLMNPMPMPEKFIQEVKKVSVGDILNLEELTKHLVELGYEKNYQAETMGEFSVRGGILDI 180

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP   ED  +R+  +G++++ I  F   + + I N+E I IY     V         +K 
Sbjct: 181 FPL-TEDNPFRIEFWGDEVDSIRSFDAESQRSIENLEEISIYPACELVLTAEERQEGIKR 239

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           I +E      +L KE +  EA R +       E     G    ++ Y  Y       E  
Sbjct: 240 ILKEADKVSAKLRKEMKTEEAHRTKSAAAQIAEEAGELGISAGLDAYLSYFC-----EER 294

Query: 459 PTLFEYIP-EDSLLFVDESHVTIPQISGMY-RGDFHRKATL-AEYGFRLPSCMDNRPLRF 515
            +L +Y   E++++FVDE   +I +  GM    +F        E G+ LP  M  R L F
Sbjct: 295 VSLLDYFNRENTVIFVDELARSIER--GMVTETEFSESMKQRLEKGYILPGQM--REL-F 349

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                L     +   +  + +L+     I E+    +  V+P           E +  ++
Sbjct: 350 SCKEILAKIETMACISLVALDLKNSHVDIKEKFTINSKTVNP------YNNSFELLVKDL 403

Query: 576 NLAAQQGLRILLT----VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
               + G R++L        KR+AEDL             M  E+      +   +++ G
Sbjct: 404 TRYKKNGYRVILLSGSRTRAKRLAEDL-------------MAEELNAFYSEDFDHEVKPG 450

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDAD 660
             +++ G   +++G + P    V I ++D
Sbjct: 451 --EIMTGYGKIKKGYEYPLLKFVVISESD 477



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 3/104 (2%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +A  + E + E N  V Y H ++K  E   I+     G+ DVLV   ++  GLDI     
Sbjct: 851 VAAKIAELVPEAN--VAYAHGQMKETELENIMYRFINGEIDVLVSTTIIETGLDISNVNT 908

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           + I DAD  G L     L   +GR+ R   + ++   D + K I
Sbjct: 909 MIIHDADNMG-LSQLYQLRGRVGRSNRTAYAFLMYRRDKMLKEI 951


>gi|332981377|ref|YP_004462818.1| transcription-repair coupling factor [Mahella australiensis 50-1
           BON]
 gi|332699055|gb|AEE95996.1| transcription-repair coupling factor [Mahella australiensis 50-1
           BON]
          Length = 1159

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/305 (20%), Positives = 130/305 (42%), Gaps = 35/305 (11%)

Query: 173 LLGVTGSGKTFTMAKVIE-AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           + GV   G+ + M  ++  A  + AIV+  N++ A QLY +  + F    V  F      
Sbjct: 31  IYGVPDEGRAYLMYVLVNIASSKSAIVITHNEVRAKQLYDDMSSIFKDIPVYLF------ 84

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESY 290
                  P  +T +   S  + ++   R      L  + + IV++S+  +   +   E +
Sbjct: 85  -------PAAETILYDVSGKSNEVLFQRLEIENRLAFKENMIVIASIDALLPRLMPFEEF 137

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           ++   ++ IG  +E+  +   L++  Y+R+++   +G F + GD I+ +P   E+ A+R+
Sbjct: 138 NKYFHEISIGQIIERDVMERWLLEAGYQREELVEAKGQFAIRGDIIDFYPIVGEE-AYRI 196

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             F ++++ I  F   T +    V+   I      V      + A K ++ E        
Sbjct: 197 EFFDDEVDSIRRFDADTQRSTDKVDKAVISPVKELVYDSGVADRAAKAMRSE-------- 248

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
                  E      +I  D+E+L      +++E Y  +   +  G     L +Y+P  +L
Sbjct: 249 ------FERINGNDQIGGDIELLSQNARFENVERYMPFFYNKVAG-----LLDYMPTGTL 297

Query: 471 LFVDE 475
            F++E
Sbjct: 298 FFMEE 302



 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 9/114 (7%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MA  L E + E  I V +       LER+  + D   G +DVL+   ++  GLDIP    
Sbjct: 837 MAIHLHELVPEARIAVAHGRMGDDKLERV--MMDFMDGYYDVLLCTTIIETGLDIPNVNT 894

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
           + + DAD  G       L Q  GR  R   S  + YA    K  ++  +E  +R
Sbjct: 895 LIVYDADHFGL----AQLYQLRGRVGR---SNRLAYAYFTYKKDRVLTEEAEKR 941


>gi|308066876|ref|YP_003868481.1| transcription-repair coupling factor (TRCF) [Paenibacillus polymyxa
           E681]
 gi|305856155|gb|ADM67943.1| Transcription-repair coupling factor (TRCF) [Paenibacillus polymyxa
           E681]
          Length = 1175

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 147/326 (45%), Gaps = 31/326 (9%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A  A +  GI S  K QL+ G++GS +   MA + E   RP +VM  N   A ++  + +
Sbjct: 13  ADYASIAAGISSGMKEQLISGLSGSSRQVLMAALAEDTGRPLMVMTHNMFAAQKIADDLQ 72

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
                + V  +        P   +   +  I    +++++ID +   A     +    IV
Sbjct: 73  EALSPDQVLLY--------PANELVAAEAAISSPETLSQRIDVLIRCA-----QGFRGIV 119

Query: 275 VSSVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V   S +  +  + E++ +  ++LK G++++ +  L  +V+  Y+R +    RG   V G
Sbjct: 120 VVPFSGVRRLLPIPETWREARIELKEGETIQLEAFLLHMVEMGYQRVERVESRGEMSVRG 179

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+ +P       +RV +F ++I+ I +F P   Q  R+VE ++       VTP   + 
Sbjct: 180 GIIDFYPMTTR-WGYRVELFDDEIDSIRKFDP---QDQRSVEKVQDVT----VTPCKEVI 231

Query: 394 TAMKYIKEELKMRLIELEKE-GRLLE---AQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
              + + +      I LE++ G++ +    Q L++ I  ++E+L        I  Y   L
Sbjct: 232 ANNQRMDQAADAAAILLEEQLGKMTDRQAKQHLKEEIHREIELLREHVYFDEIYKYISLL 291

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDE 475
                     TL +Y+P D++L +DE
Sbjct: 292 YPER-----KTLADYMPADTILIIDE 312



 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V   H ++   E  + I D   G++DVLV  +++  G+DIP    + + DADK G    
Sbjct: 849 KVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGL--- 905

Query: 668 KTSLIQTIGRAARNVNSKVILYA 690
            + L Q  GR  R   S  I YA
Sbjct: 906 -SQLYQLRGRVGR---SNRIAYA 924


>gi|291535574|emb|CBL08686.1| transcription-repair coupling factor [Roseburia intestinalis M50/1]
          Length = 1176

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 109/509 (21%), Positives = 199/509 (39%), Gaps = 56/509 (11%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           L  G+H    +  + G   + K   M  V        IV    +  A ++Y E++ F P 
Sbjct: 17  LSAGVHDLRGIAQISGCIDAAKPHIMYSVNNGSGNRIIVTFQEQ-RAKEIYEEYRFFDP- 74

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
                           AY P  D    +       +   R +A + L E + C ++++  
Sbjct: 75  --------------KAAYYPAKDILFYQSDIRGNVLTAERINALKMLAEESSCTIITTFD 120

Query: 280 CIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
            +   +   E + Q + ++ +GD +  +EL   LV+  Y++       G F V G  ++I
Sbjct: 121 GLMNPMPMPEKFIQEVKKVSVGDILNLEELTKHLVELGYEKNYQAETMGEFSVRGGILDI 180

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP   ED  +R+  +G++++ I  F   + + I N+E I IY     V         +K 
Sbjct: 181 FPL-TEDNPFRIEFWGDEVDSIRSFDAESQRSIENLEEISIYPACELVLTAEERQEGIKR 239

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           I +E      +L KE +  EA R +       E     G    ++ Y  Y       E  
Sbjct: 240 ILKEADKVSAKLRKEMKTEEAHRTKSAAAQIAEEAGELGISAGLDAYLSYFC-----EER 294

Query: 459 PTLFEYIP-EDSLLFVDESHVTIPQISGMY-RGDFHRKATL-AEYGFRLPSCMDNRPLRF 515
            +L +Y   E++++FVDE   +I +  GM    +F        E G+ LP  M  R L F
Sbjct: 295 VSLLDYFNRENTVIFVDELARSIER--GMVTETEFSESMKQRLEKGYILPGQM--REL-F 349

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                L     +   +  + +L+     I E+ +  +  V+P           + +  ++
Sbjct: 350 SCKEILAKMEKMACISLVALDLKNSHVDIKEKFVIDSKTVNP------YNNSFDLLVKDL 403

Query: 576 NLAAQQGLRILLT----VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
               + G R++L        KR+AEDL             M  E+      +   +++ G
Sbjct: 404 TRYKKNGYRVILLSGSRTRAKRLAEDL-------------MAEELNAFYSEDFDHEVKPG 450

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDAD 660
             +++ G   +++G + P    V I ++D
Sbjct: 451 --EIMTGYGKIKKGYEYPLLKFVVISESD 477



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 3/104 (2%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +A  + E + E N  V Y H ++K  E   I+     G+ DVLV   ++  GLDI     
Sbjct: 851 VAAKIAELVPEAN--VAYAHGQMKETELENIMYRFINGEIDVLVSTTIIETGLDISNVNT 908

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           + I DAD  G L     L   +GR+ R   + ++   D + K I
Sbjct: 909 MIIHDADNMG-LSQLYQLRGRVGRSNRTAYAFLMYRRDKMLKEI 951


>gi|189423769|ref|YP_001950946.1| transcription-repair coupling factor [Geobacter lovleyi SZ]
 gi|189420028|gb|ACD94426.1| transcription-repair coupling factor [Geobacter lovleyi SZ]
          Length = 1165

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 109/248 (43%), Gaps = 16/248 (6%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           AAIA+L + +        L G+ GS     +A++   + R  +V+A ++  A +L  E  
Sbjct: 13  AAIARLAEQLRHGAHPATLTGLAGSAPALAVAELSRLLPRQIVVIAADQAAADELTRELL 72

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            F   NAV   VS +         P  DT   + +S +  I   R    + LL+ + C V
Sbjct: 73  FF---NAVN--VSPF---------PAWDTCPFEAASPHPDISGARLETLQRLLQGSPCTV 118

Query: 275 VSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+ V+ +   I      +     +K GD  +++ LL  LV+  Y    +   RG+F V G
Sbjct: 119 VAPVAALMQRIIPRSLLTGASCAIKPGDEPDREALLEGLVRMGYTNCPLVEERGSFAVRG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++IFP  L     R+  FG+ +E +  F PL  + + ++  + +  +   +     L 
Sbjct: 179 GILDIFPPSLPRPV-RIEFFGDTVETLRSFDPLNQRSLESLTCLNLLPSRELILSPAALQ 237

Query: 394 TAMKYIKE 401
             +  +KE
Sbjct: 238 EFIPRLKE 245


>gi|138893727|ref|YP_001124180.1| transcription-repair coupling factor [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265240|gb|ABO65435.1| Transcription-repair coupling factor [Geobacillus
           thermodenitrificans NG80-2]
          Length = 1177

 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 134/316 (42%), Gaps = 21/316 (6%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           +++GIH R K QL+ G++GS ++  ++ + +   RP +V+A N   A ++Y +  +    
Sbjct: 17  IIEGIHVRLKEQLVAGLSGSARSVFISTLYKETGRPMLVVAHNLFQAQKIYDDLVSLLGP 76

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           + V +  S  +    E  V   +   ++       ++ M H A     E    +V     
Sbjct: 77  DDV-FLYSVNEVIAAEMAVASPELKAQR-------LEIMNHWAQ----EGKGVVVCPVAG 124

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
               +  +  +   +    +G  ++ +      V+  YKR       G F + G  ++I+
Sbjct: 125 LRRLLPPLSLWKHYLFTFSVGQELDLERYKQLFVEMGYKRVATVSAPGEFSIRGGIVDIY 184

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P   E + +R+ +F  +IE I  F P   +    V+ + I      +         ++ I
Sbjct: 185 PLTAE-LPYRIELFDTEIESIRTFTPDDQRSHEQVDRVMIGPADEIILNEEARQRGIERI 243

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
           +  L   L  ++ +      QR+ + I  +LE L      Q IE   +Y++     E   
Sbjct: 244 EAGLAASLENIKDDA---AKQRMYEHIHAELEQLR---EGQEIEQQYKYMSLFY--EKAA 295

Query: 460 TLFEYIPEDSLLFVDE 475
           +L +Y+PED +L +DE
Sbjct: 296 SLLDYLPEDGVLLMDE 311



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV + H  +   E    I     G++DVLV   ++  G+DIP    + + DAD+ G    
Sbjct: 860 RVTFAHGRMSEAELESTILAFLEGQYDVLVTTTIIETGVDIPNVNTLIVYDADRMGL--- 916

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 917 -SQLYQLRGRVGRS 929


>gi|78043233|ref|YP_359072.1| transcription-repair coupling factor [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995348|gb|ABB14247.1| transcription-repair coupling factor [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 1160

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 152/328 (46%), Gaps = 24/328 (7%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +LL+GI+ ++++QL+ G  G+ +TF MA V +A+ RP +V+  N+ +A ++  + + F  
Sbjct: 17  RLLEGIN-KKRIQLIYGSYGTARTFLMATVAKALNRPLLVITENEQVAREIAEDLEFFLG 75

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
                +F  Y + +  +  V       E ++S  E + R+               VV+  
Sbjct: 76  DKTSRFF--YREGFLFDLTVREGG---ELKASRIELLKRLSRG-------EKPHTVVNYE 123

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           +       ++S+++   +L++GD VE +EL+  L +  Y+R D     G F   G  +++
Sbjct: 124 ALTRKYPPLQSFARWKRELRVGDVVELEELIRYLSQIGYERVDQVEAPGQFSQRGGIVDV 183

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           +     +V +R   FG++I+ +      + +   N+  + IY     V     L    + 
Sbjct: 184 YVPG--EVPFRAEFFGDEIDSLRALDVESQRSQANLNEVVIYPAEVAVAEEDLLLEVKQK 241

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           I  +++ ++ +L ++ +   A RL+++     E+L   G  + IE    Y          
Sbjct: 242 ISADIEQQVKKLIQQNKREAAGRLKEK---GAEVLNILGKSEVIEKLLPYFWS------G 292

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGM 486
            +L +Y  ++ L+F+DE      QI+ +
Sbjct: 293 VSLLDYFGDEYLVFLDEPGRFGEQINSL 320


>gi|20808914|ref|NP_624085.1| transcription-repair coupling factor [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517574|gb|AAM25689.1| Transcription-repair coupling factor - superfamily II helicase
           [Thermoanaerobacter tengcongensis MB4]
          Length = 1169

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/316 (19%), Positives = 141/316 (44%), Gaps = 22/316 (6%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           L+ G+  S K      +++   +  +V+ P+ + A ++Y +  +F    A          
Sbjct: 27  LIYGLADSQKAHIAHYLMKKFNKKVLVITPDDVEARRIYEDLYSFNEGEA---------- 76

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESY 290
               +  P+ D    K  + + +I   R    + L E     VV+SV  +   +     +
Sbjct: 77  ----SLFPKRDIVFYKIDAASHEIVFERLKVIKRLSEDRPYAVVASVDALLDKMPPFYLF 132

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            +    LKIGD ++  + L  L    Y+R  +   +G F V G  I+IFPS  E+  +R+
Sbjct: 133 RKYQFSLKIGDKIDLGKFLKKLEVMGYERVQMVEGKGQFSVRGGIIDIFPS-TEEYPFRI 191

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F ++++ +  F  +T + I+  E + I+  + ++     +   +  + ++L   L ++
Sbjct: 192 ELFDDEVDSLRTFDVMTQRSIKTAEEVFIFPATEFIVEEEHIKRGISSLSKDLNSYLSKI 251

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            K    + A++L ++    +E +      +SI+    Y       E   ++ +Y+ ED++
Sbjct: 252 RKTKSGM-AEKLREKFDEIMEEISQGKKRESIKVLINYFY-----EDLQSIKDYVGEDAI 305

Query: 471 LFVDESHVTIPQISGM 486
           + +DE++    ++S +
Sbjct: 306 VILDETNRIKQRVSNL 321



 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N R+   H +++  +  +++ D   G++DVLV   ++  GLDIP    + + DADK G  
Sbjct: 859 NCRIAVAHGQMEENKLEQVMVDFLKGEYDVLVTTTIIETGLDIPNVNTIIVYDADKLGL- 917

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R+
Sbjct: 918 ---AQLYQLRGRVGRS 930


>gi|160895086|ref|ZP_02075860.1| hypothetical protein CLOL250_02637 [Clostridium sp. L2-50]
 gi|156863517|gb|EDO56948.1| hypothetical protein CLOL250_02637 [Clostridium sp. L2-50]
          Length = 1174

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 179/443 (40%), Gaps = 45/443 (10%)

Query: 229 YDYYQPEAYV-PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
           + +Y    Y+ P  D            I R R    R L+E   C ++ +V  ++     
Sbjct: 69  FRFYDKAVYMYPSKDILFYSSDIHGNSITRRRMDIFRRLIEGEACTIILTVDALFDRMPD 128

Query: 288 ESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            SY  + +V ++  + ++ + L   LV+  Y++ D     G F V G  I+IFP   E+ 
Sbjct: 129 LSYIKKNVVTIREAEELDVEALKKCLVELGYEKADSVDGVGQFAVRGGIIDIFPL-TEEC 187

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+ M+  +++ I  F   + + I  V+ I+IY  S  V         ++ +++E K  
Sbjct: 188 PYRIDMWDTEVDTIRSFDVESQRSIEQVQEIQIYPASEMVLSDRRTAQGIRKLEQEFKPY 247

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             +L KE +  EA RL+++I    E L        +++Y  Y   +        L  +  
Sbjct: 248 YEKLRKEFKTEEAARLKKQIGEIKEQLTEFHGMAGVDSYVEYFYSKTVS----LLDCFRT 303

Query: 467 EDSLLFVDESHVTIPQISGMYRGDF-HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
           +++++ +DE+   I   +  Y   F     +  E G+ LP  M          N L    
Sbjct: 304 KNTVILLDETS-RISDYADNYMATFLESMESRLEGGYILPGMM----------NILFTYP 352

Query: 526 IVVSATPGSWELEQCQGIIVEQ----IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            +V        L     I+  +     IR     D  V + S R   E +  +I    ++
Sbjct: 353 AIVQKMQAFQTL--AFSILYHEDRYFTIRHDVTYDSRV-VNSYRNNFEALIADIGKWREK 409

Query: 582 GLRILL----TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             RI+     T   KRM E+LT +       V   +SE    +R+       L + +V+V
Sbjct: 410 NYRIIFISPSTTRAKRMVENLTSH------DVACFYSE--DTDRV-------LSEKEVMV 454

Query: 638 GINLLREGLDIPECGLVAILDAD 660
               LR G + PE  LV I + D
Sbjct: 455 TTGRLRAGFEFPELKLVVINEGD 477


>gi|239825634|ref|YP_002948258.1| transcription-repair coupling factor [Geobacillus sp. WCH70]
 gi|239805927|gb|ACS22992.1| transcription-repair coupling factor [Geobacillus sp. WCH70]
          Length = 1177

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 141/320 (44%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +  +++G+ +R K QL++G++GS ++  ++ +    +RP +V+A N   A ++Y +    
Sbjct: 14  VRSIIEGVKARLKEQLVVGLSGSARSVFISSLYRETERPLLVIAHNLFQAQKIYDDLVQL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
               A E F+            P  +    + +  + ++   R       L+ N  +V+ 
Sbjct: 74  L--GAEEVFL-----------YPVNEVIAAEMAIASPELKAQRLEVMNYWLKHNKGVVIC 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +   ++ L++   ++ +      V+  YKR       G F V G  
Sbjct: 121 PVAGLRRLLPPVSLWRDHMLTLEVHHHIDVEHYKQRFVQMGYKRVATVSTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E   +R+ +F  +IE I  F     +    V+ + I      +     L   
Sbjct: 181 IDIYPLTAE-FPYRIELFDTEIESIRTFTADDQRSRDEVQQVTIGPADEMIVYGEMLERG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ I+  L   L +L+ E      Q L + ++ +LE L+     Q IE   +Y T     
Sbjct: 240 IERIEAGLAESLNKLKDEK---AKQLLLEHVSSELEQLK---QGQEIEQQYKY-TALFYN 292

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           E P +L +Y+PE+ +L +DE
Sbjct: 293 E-PASLLDYMPENGILLMDE 311



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE++++ + E   RV Y H  +   E    +     G++DVLV   ++  G+DIP    +
Sbjct: 849 AEEISQLVPE--ARVTYAHGRMTENELESTMLAFLEGQYDVLVTTTIIETGVDIPNVNTL 906

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681
            + DAD+ G     + L Q  GR  R+
Sbjct: 907 IVYDADRMGL----SQLYQLRGRVGRS 929


>gi|317126795|ref|YP_004093077.1| transcription-repair coupling factor [Bacillus cellulosilyticus DSM
           2522]
 gi|315471743|gb|ADU28346.1| transcription-repair coupling factor [Bacillus cellulosilyticus DSM
           2522]
          Length = 1185

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/330 (19%), Positives = 149/330 (45%), Gaps = 43/330 (13%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +  +++G+ +    Q++ G+ GS ++  +A + E  +R  +V+  N   A +LY +  + 
Sbjct: 14  VKSIVEGVEANISEQMVSGLAGSARSLLLATIFEKTKRSQLVITHNLFQAQKLYDDLTSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI-NEQIDRMRHSATRSLLERNDCIVV 275
              + V              Y+   +  I  E ++ + ++   R  A    +   D IV+
Sbjct: 74  IGEDQV--------------YLYPVNELIASEIAVASPEMKGQRMEALNQWISNKDAIVI 119

Query: 276 SSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           + ++ +  +   +S + +  +  ++G  +E    L+ LV   ++R D+    G F V G 
Sbjct: 120 APMAGVRRLLPPKSLWFEFQLSFQVGKDIELNTTLNQLVNMGFQRVDMVSTPGQFSVRGG 179

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ------KIRNVETIK--IYANSHYV 386
            I+I+P   E+   R+ +F  +++ I  F+ +  Q      ++ N+   K  +    HY 
Sbjct: 180 IIDIYPL-TEENPVRIELFDTEVDSI-RFFNVESQLSETQLQVVNIGPAKEVLLKEEHYQ 237

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY- 445
               +L  A+    +++K + ++          +++ +++ +++ +L+   S  S+  Y 
Sbjct: 238 HGASSLEQALATSLKKVKNKAVK----------EKMAEQVGHEIRLLKEKTSFDSMYKYM 287

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           S +   R       TL +Y+P + L+F+DE
Sbjct: 288 SLFYDTRY------TLLDYMPNNGLIFIDE 311



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VR++H  +   E   ++ +   G  DVLV   ++  G+DIP    + I +ADK G     
Sbjct: 861 VRFVHGRMTESELESVMLEFLDGNVDVLVTTTIIETGVDIPNVNTLIIDNADKMGL---- 916

Query: 669 TSLIQTIGRAARN 681
           + L Q  GR  R+
Sbjct: 917 SQLYQLRGRVGRS 929


>gi|134297990|ref|YP_001111486.1| transcription-repair coupling factor [Desulfotomaculum reducens
           MI-1]
 gi|134050690|gb|ABO48661.1| transcription-repair coupling factor [Desulfotomaculum reducens
           MI-1]
          Length = 1169

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 107/516 (20%), Positives = 207/516 (40%), Gaps = 61/516 (11%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            LL+G+    + Q++ G++GS +++  A +    Q   +++ P +  A  L  +     P
Sbjct: 16  HLLQGLEKGFRQQMVFGLSGSQRSYLFAGLAHGWQ-SVLIVTPGETEAGTLADDLATLLP 74

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
             +V+ F  +     P   +  ++  + +   + E++   + +           +VV+SV
Sbjct: 75  EVSVQPFPVWQ--LLPYQVLAHSNEVLAQRLRVLEKLSTGKPT-----------VVVTSV 121

Query: 279 SCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             +   +   E +    V+L +G  V+ ++L   LV+  Y R D+   RG F   G  ++
Sbjct: 122 DALLRRLTPPEVFRCAKVKLSLGQQVDLEKLRFELVELGYTRVDLVEGRGQFSSRGGILD 181

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           I+P   E +  R+  F ++++ I  F     + +  ++ I I      V          +
Sbjct: 182 IYPMS-EALPVRIEFFDDEVDSIRHFEVDNQRSLDKLKEINISPCRELVVTPAGWQRCEE 240

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
               E K +L +L++ G +    +L  +    LE +        +E    Y         
Sbjct: 241 NYSLEFKNQLKKLQRSGSVDAVHQLSSQGAMLLEQIRRRVPFDGMEQLLYYFY-----PE 295

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT-LAEYGFRLPSCMDNRPLRFE 516
           P TL +Y     LL VD+  +   +++     + +   T L   G  LP    +    + 
Sbjct: 296 PITLLDYFTAAPLLLVDDP-IRFKEVAETILKERNETYTDLLGKGKVLPGYFSS----YL 350

Query: 517 EWNCL-----RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVED 570
           EW  L     R  TI  S  P +            Q +RP  +V+ P + + S     E 
Sbjct: 351 EWRQLLASIERQQTIFCSFLPRN-----------PQYLRPQNVVNFPAKAMHSFLGHAEV 399

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI---RVRYMHSEVKTLERIEIIRD 627
           + DEI    ++G  I L V ++  A +L + L +  I   RV+ +  EV+          
Sbjct: 400 LADEIRHWRRRGYAITLLVSSEERAANLLKTLKDSKIDAFRVKQLDQEVR---------- 449

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
               + +V++ +  +  G ++    LV I DA+  G
Sbjct: 450 ----EGNVVITVGQMANGFELISARLVVITDAEIFG 481


>gi|226309690|ref|YP_002769584.1| transcription-repair coupling factor [Brevibacillus brevis NBRC
           100599]
 gi|226092638|dbj|BAH41080.1| transcription-repair coupling factor [Brevibacillus brevis NBRC
           100599]
          Length = 1182

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 139/333 (41%), Gaps = 53/333 (15%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +A L KG+H     QL+ G+ GS +   MA + +   RP  V+  N   A ++Y +    
Sbjct: 18  VAGLEKGLHE----QLVSGLAGSARQVLMASLQQMADRPVCVVTHNMYQAQKVYEDLIEL 73

Query: 217 FPHNAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270
            P + V      E   S      PE    R   +           +R+    T  L    
Sbjct: 74  VPSDQVLLYPGNELIGSELAIASPEMLAQRIHVF-----------NRLAQGFTGFL---- 118

Query: 271 DCIVVSSVSCIYGIGSV----ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
                  V+   G+  +    + + +  +QL +G+ ++ +  L   ++  Y+R D+   +
Sbjct: 119 -------VAPFAGLRRLVVPPQVWKEAQIQLSVGNELDIESFLLRCIELGYERVDMVERK 171

Query: 327 GTFRVCGDSIEIFPSHLEDVAW--RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
           G   + G  I+++P    D  W  R+ +F  +I+ I  F  L+ + + +V+T  +     
Sbjct: 172 GEMSIRGGIIDLYPI---DSEWPVRIELFDVEIDSIRTFDMLSQRSLESVQTYILGPAKE 228

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
            +   P L  +   ++++L   L  L K+G   E  ++ +RI  D E ++       + +
Sbjct: 229 MIASTPLLQESAVRLEQKLGETLANL-KDGAAKE--KVMERIGSDAERMKQGQRFAQLYS 285

Query: 445 YSR--YLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           Y    Y TG        TL  Y+P D+LL VDE
Sbjct: 286 YISVIYPTG-------DTLLSYMPSDTLLLVDE 311



 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++MAE ++  +   + R+   H ++   E   +I D   G FDVLV   ++  G+DIP  
Sbjct: 848 EQMAEQIS--MLVPDARIAVAHGQMNESELEGVILDFLEGNFDVLVSTTIIETGVDIPNV 905

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
             + I +ADK G     + L Q  GR  R   S  I YA
Sbjct: 906 NTLIIYNADKMGL----SQLYQLRGRVGR---SNRIAYA 937


>gi|291540815|emb|CBL13926.1| hypothetical protein RO1_36780 [Roseburia intestinalis XB6B4]
          Length = 471

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 128/318 (40%), Gaps = 24/318 (7%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           L  G+H    +  + G   + K   M  V        IV    +  A ++Y E++ F P 
Sbjct: 17  LSAGVHDLRGIAQISGCIDAAKPHIMYSVNNGSGNRIIVTFQEQ-RAKEIYEEYRFFDPK 75

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
                           AY P  D    +       +   R +A + L E + C ++++  
Sbjct: 76  ---------------AAYYPAKDILFYQSDIRGNVLTAERINALKMLAEESSCTIITTFD 120

Query: 280 CIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
            +   +   E + + + ++ +GD +  +EL   LV+  Y++       G F V G  ++I
Sbjct: 121 GLMNPMPMPEKFIREVKKVSVGDILNLEELTKHLVELGYEKNYQAETMGEFSVRGGILDI 180

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP   ED  +R+  +G++++ I  F   + + I N+E I IY     V         +K 
Sbjct: 181 FP-LTEDNPFRIEFWGDEVDSIRSFDAESQRSIENLEEISIYPACELVLTAEERQEGIKR 239

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           I +E      +L KE +  EA R +       E     G    ++ Y  Y       E  
Sbjct: 240 ILKEADKVSAKLRKEMKTEEAHRTKSAAAQIAEEAGELGISAGLDAYLSYFC-----EER 294

Query: 459 PTLFEYIP-EDSLLFVDE 475
            +L +Y   E++++FVDE
Sbjct: 295 VSLLDYFNRENTVIFVDE 312


>gi|182420058|ref|ZP_02951292.1| transcription-repair coupling factor [Clostridium butyricum 5521]
 gi|237669507|ref|ZP_04529487.1| transcription-repair coupling factor [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182376095|gb|EDT73682.1| transcription-repair coupling factor [Clostridium butyricum 5521]
 gi|237654951|gb|EEP52511.1| transcription-repair coupling factor [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 1166

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 95/502 (18%), Positives = 208/502 (41%), Gaps = 67/502 (13%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           + G+  SG+ +T+  + E + R  +++  + + A  +Y +       N V YF       
Sbjct: 32  IYGIAESGRVYTIDSIFENIDRSMVIVTQSDMEAKNIYEDL--LLYTNDVHYF------- 82

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES-YS 291
                 P  +       +I+  +   R      +L++   I+V+S+       +    ++
Sbjct: 83  ------PAKEMVFYNIDAISGDLRWARLKVINEILKKKKKIIVTSIDAFSARYTPHKLFA 136

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              ++ K  D +   E+   L++  Y+R ++   +G F + G  +++FP+      +R+ 
Sbjct: 137 DYTMKFKESDEINLIEVSKKLIQSGYERVEMVEGKGQFALRGGILDVFPT-CSAYPYRIE 195

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +FG++I+ I  F   + + I  V+ I+++     +    T++      KE+LK     + 
Sbjct: 196 LFGDEIDSIRTFNTESQRSIDKVKKIEVFPAKEIIITDETISLG----KEKLKKEFDNIS 251

Query: 412 K-EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
           K +      ++L   +  +LE LE T + ++I++Y  Y       +   +LF+Y+ +D L
Sbjct: 252 KSDTDSARVEKLRNILNKNLESLEETSTFETIDSYLPYFC-----KETESLFDYL-KDCL 305

Query: 471 LFVDESHVTIPQISGMYRGDFHRKAT-LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
             +D+      ++   Y  +F    T  ++ G   P                +   +++S
Sbjct: 306 FIIDDVQRCEGKLDSTYL-EFEENFTAFSQRGDIFP----------------KQGELLIS 348

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SART------QVEDVYDEINLAAQQG 582
                   +  + + ++ +++     +P   +  S RT      Q++ + DEI+    QG
Sbjct: 349 KEEVIESFKDKKVVFLDGLVKKNSWFNPYTTVNISERTLNNYQGQLDLLIDEISDKKNQG 408

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            +I++   T+   E L   L +R I   Y  +          + +++ G+  +  G  L 
Sbjct: 409 YKIVILSGTRARGERLVGTLRDRGIESSYKDT----------VDNIQYGEVVITFGNQL- 457

Query: 643 REGLDIPECGLVAILDADKEGF 664
             G   PE  +  I  +DKE F
Sbjct: 458 -HGFQYPEYKVCVI--SDKEVF 476


>gi|303239799|ref|ZP_07326323.1| transcription-repair coupling factor [Acetivibrio cellulolyticus
           CD2]
 gi|302592736|gb|EFL62460.1| transcription-repair coupling factor [Acetivibrio cellulolyticus
           CD2]
          Length = 1177

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 94/454 (20%), Positives = 183/454 (40%), Gaps = 47/454 (10%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           + G + S K      +   +    I++A N++ A ++Y +   FF  + + +        
Sbjct: 36  ITGPSESQKAHIAYAICGHLNSKGIIVAYNELQARKIYDDLVYFFEKDVILF-------- 87

Query: 233 QPEAYVPRTDTYIEKESSINEQI---DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
                V   D   +   S+ E+I   DR+     R        IV S+ +  + +   E 
Sbjct: 88  -SSKEVMLHDIEAKSYDSVYERIVALDRIVKHDYR-------FIVTSAEALCHKLIRKEL 139

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    ++      ++   ++  LV   Y+R      +G F + G  I+IFP +  D A+R
Sbjct: 140 FLSSCLKFCYDKRIDLALIIQKLVSIGYERVTTVEGKGQFAIRGGIIDIFPVNY-DSAFR 198

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           + +F ++I+ I  F  L+ + +  VE + I      +     L   +  I+ +L     +
Sbjct: 199 IELFDDEIDSIRTFDVLSQRSVEKVENVDILPAREIIYEPSDLERMISGIQNDLIAHKGK 258

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
           +  + +     ++++RI++D++  +       ++ Y  Y+      E P  L +YI +D 
Sbjct: 259 IGSKAKQDYLDKIDERISHDIDKFKEECYFPGMDKYIPYII-----ESPSLLTDYIDDDI 313

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE---WNCLRPTTI 526
           L+F DE      ++  +   +     +L E G  LP C D   + FE    W  L+    
Sbjct: 314 LVFFDEPKRFEQRVENILAENREMCKSLLEKGHLLPGCFD---IYFEFDYIWGKLKTHKS 370

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQQGL 583
           +   T  S E            I  +G     +    + S +  +E + D+I     +  
Sbjct: 371 IYFNTIMSDE------------ILASGSQKYNIASKLLNSYQGNLELIVDDIKYWKGKNS 418

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           R+L+   TK   E L + L  ++I   Y+  EVK
Sbjct: 419 RVLILAGTKSRGEMLADTLRTKDIESVYI-DEVK 451


>gi|300362407|ref|ZP_07058583.1| transcription-repair coupling factor [Lactobacillus gasseri JV-V03]
 gi|300353398|gb|EFJ69270.1| transcription-repair coupling factor [Lactobacillus gasseri JV-V03]
          Length = 1171

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 131/309 (42%), Gaps = 27/309 (8%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           +EK  LL GV     +  + +++   QRP I++  ++  A  L  E  N  P N V  F 
Sbjct: 22  KEKRSLLTGVNSGAFSAVLMQMLSTWQRPLILVEDSEDKAQMLLDELGNLLPDNMVFSF- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
                  P      T T I     +++++  ++    +    R   +VV+  +  Y +  
Sbjct: 81  -------PVDATIATQTAIASPDELSQRLQTLQFLTEK----RAGIVVVTPQALQYKLSD 129

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
              +++     K     +  EL +   +  Y+R++I    G F   GD ++++P   E+ 
Sbjct: 130 PRDFTKAKQVFKPEAEFDLDELTAWFTQAGYRRENIVARPGEFARRGDILDVYPLDQEN- 188

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  FG++++ + EF   T + +   + + I      V     L+ A+K IK+++K  
Sbjct: 189 PFRIEFFGDEVDTVKEFDAATQRSLEEKDIVSIGPALDRVFSSRNLHEAVKKIKQDMKKS 248

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           + + E          ++      +++LE  G  ++      YL  ++       L +Y+ 
Sbjct: 249 IAKEEN---------VKNHFVKAIDLLEADGLPENYAFLVDYLLPKS-----FNLIDYLD 294

Query: 467 EDSLLFVDE 475
           ++ LL  D+
Sbjct: 295 KNGLLLFDD 303


>gi|302669664|ref|YP_003829624.1| transcription-repair coupling factor Mfd [Butyrivibrio
           proteoclasticus B316]
 gi|302394137|gb|ADL33042.1| transcription-repair coupling factor Mfd [Butyrivibrio
           proteoclasticus B316]
          Length = 1191

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 143/328 (43%), Gaps = 28/328 (8%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           I++  + + A ++Y ++K F+  N   Y      +YQ + +              + +I 
Sbjct: 53  IIVTYSDLRAKEIYEDYK-FYDRNVTVYPAKDLIFYQADVH--------------SNEIV 97

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           R R    R LLE     VV++ + +       E     I+++     +++ E+   L   
Sbjct: 98  RQRIRTMRRLLEGRPVTVVTTFAALMAPQIRPEIIRDNILEIDKHKPIDEIEIAKRLTTM 157

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y R       G F V GD +++F    E+  +R+ ++G++I+ I  F  L+ + +  +E
Sbjct: 158 GYIRNYQVEGPGEFSVRGDIVDVF-DLTEENPFRIELWGDEIQSIRSFDILSQRSLEKLE 216

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
           +I+IY  S  +     L+  M  I+E+   R+  L  E +  EA +L+ +     E L  
Sbjct: 217 SIEIYPASEIILTEQLLSEGMDRIQEDTDKRVELLRSEFKTKEAHQLKTQTEELREQLFE 276

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED-SLLFVDESHVTIPQISGMYRGDFHRK 494
             S  ++E+Y RY           T+ E  P+  S +F+DE    + + +     +F   
Sbjct: 277 LKSLVNLESYIRYFY-----PDTVTMQEMFPKGKSCIFIDEPQ-RVQEHAWAVETEFKES 330

Query: 495 AT-LAEYGFRLPSCMDNRPLRFEEWNCL 521
            T  AE G+ LP  MD   L +   NC+
Sbjct: 331 MTHRAEKGYTLPGQMD---LLYSIDNCI 355



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V + H ++K  E   I+ D   G  DVLV   ++  GLDIP    + I D+DK G L   
Sbjct: 873 VAFAHGQMKESELERIMYDFIDGTIDVLVSTTIIETGLDIPNVNTMIIHDSDKMG-LSQL 931

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSI 697
             L   +GR+ R   + ++   D + K +
Sbjct: 932 YQLRGRVGRSNRTAYAFLMYKKDKMLKEV 960


>gi|167766179|ref|ZP_02438232.1| hypothetical protein CLOSS21_00673 [Clostridium sp. SS2/1]
 gi|167712259|gb|EDS22838.1| hypothetical protein CLOSS21_00673 [Clostridium sp. SS2/1]
          Length = 1173

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/240 (20%), Positives = 108/240 (45%), Gaps = 7/240 (2%)

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIV 295
           Y+P  D            I R R  A + +++      V ++  +   +  +       +
Sbjct: 78  YIPAKDPLFYTADVHGNAIARDRMLAIKKIVDDKCGTFVMTIDAVMDQVVPLSDIKNHKM 137

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
             K+G+++E+  +    V + Y++       G F V G  I+IFP + ++  +R+ ++G+
Sbjct: 138 TFKMGETLEEATIAEEFVARGYEKAPFVEAPGEFAVRGGIIDIFP-YTQESPYRIELWGD 196

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F   + + I  V+T+ IY  S  +  +P +   ++ ++E+ +    + +KE +
Sbjct: 197 EIDSIRSFDKESQRSIEEVDTLTIYPASEIILNQPRIEHGLRNMEEDYEKLSQKFKKEKK 256

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
             +  RL + +    E L        +E Y  Y       E    + +Y PE+S++++DE
Sbjct: 257 YDQEARLRKEMDRVREELRELHMLIGVEGYLPYFY-----ENTECILDYFPEESMIYMDE 311



 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V + H ++K  E  EI+      + DVLV   ++  GLDIP    + I DA++ G L
Sbjct: 862 DAKVAFAHGQMKERELEEIMMGFMNHEIDVLVSTTIIETGLDIPNVNTMIIHDANQLG-L 920

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITK 695
                L   +GR+ RN  + ++   +T+ K
Sbjct: 921 SQLYQLRGRVGRSNRNAFAFLMYKKNTLLK 950


>gi|260589951|ref|ZP_05855864.1| transcription-repair coupling factor [Blautia hansenii DSM 20583]
 gi|260539758|gb|EEX20327.1| transcription-repair coupling factor [Blautia hansenii DSM 20583]
          Length = 1182

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 138/324 (42%), Gaps = 30/324 (9%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRP-------AIVMAPNKILAAQLYSEFKNFFPHN 220
           E +  L G   + K   M  + EAM++         +++A N + A +LY +++      
Sbjct: 25  EGILQLSGCVETQKAHIMYGLFEAMKKKTGQEKANCLIIAENDLKAKELYEDYRL----- 79

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS- 279
                     Y +   + P  D    +       + + R     +LLE+    V++S+  
Sbjct: 80  ----------YNREVMFYPAKDLIFFEADVHGNLLTKERMKVLAALLEKKGVTVITSMGG 129

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
           C+  +  +E+  + ++  +    ++  +L   L+   Y++       G F   G  I+IF
Sbjct: 130 CMDYLLPLETIEKHVLHFQSDSPLDMDKLKKQLLGMGYEKNAQAEAPGQFSFRGGIIDIF 189

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P   ED   R+ ++G++I+ I  F   + + I N++ I IY  +  +     L   +K I
Sbjct: 190 PL-TEDNPVRIELWGDEIDSIRSFDAESQRSIENLDEITIYPAAEMLLSDEVLKKGIKKI 248

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
           +++    + +        EA RL+Q +T  LE L       + E++ RY       +   
Sbjct: 249 QKDRDAAVQKFRDAFLTEEAGRLKQVVTETLENLTEFHDFSAAEHFLRYFY-----KDVV 303

Query: 460 TLFEYI-PEDSLLFVDESHVTIPQ 482
           T  +Y   E++L+ +DE++  + Q
Sbjct: 304 TFTDYFDTENTLILLDETNRLLEQ 327


>gi|291518338|emb|CBK73559.1| Transcription-repair coupling factor (superfamily II helicase)
           [Butyrivibrio fibrisolvens 16/4]
          Length = 723

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 128/285 (44%), Gaps = 32/285 (11%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++  +++ A +LY E++ FF ++ V              Y P  D    +       + 
Sbjct: 51  LIITSDELKARELYEEYR-FFDNDVV--------------YFPAKDFLFYQSDIRGNALT 95

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           R R  A  +++  N C V++++  +   + ++  + + IV +   D+VE + L   LV  
Sbjct: 96  RERMKAIEAVISNNSCTVITTIDALMNKLPALSYFEEGIVAVSDTDTVELEALRRKLVAM 155

Query: 316 QYKRQDIGIIR--GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
            Y  +++G     G F V G  I+++P   E +  R+ ++G++++ I  + P   + I N
Sbjct: 156 GY--ENVGTCEHPGEFAVRGGIIDVYPLTAE-LPVRIELWGDEVDSIRTYDPSNQKSIEN 212

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           +  + I+     +     +   +  I++E   R     KE +  EA  L+   TY   ++
Sbjct: 213 INAVLIFPAVELILSAEEVAAGLSKIEKERDERYEAYRKEMKTEEAFHLK---TYADRVI 269

Query: 434 ETT---GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           E T   G  Q +E +  Y       +   +  +++P+ + +F+DE
Sbjct: 270 EETREWGLSQELETHLTYFC-----DKLGSFADFMPKGTYVFIDE 309


>gi|310639514|ref|YP_003944272.1| transcription-repair coupling factor [Paenibacillus polymyxa SC2]
 gi|309244464|gb|ADO54031.1| transcription-repair coupling factor [Paenibacillus polymyxa SC2]
          Length = 1175

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 143/323 (44%), Gaps = 25/323 (7%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A  A +  GI S  K QL+ G++GS +   MA + E   RP +VM  N   A ++  + +
Sbjct: 13  ADYASIAAGISSGMKEQLISGLSGSSRQVLMAALAEDTGRPLMVMTHNMFAAQKIADDLQ 72

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
                + V  +        P   +   +  I    +++++ID +   A     +    +V
Sbjct: 73  EALSPDQVLLY--------PANELVAAEAAISSPETLSQRIDVLIRCA-----QGFRGVV 119

Query: 275 VSSVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V   S +  +  + E++ +  V+LK G++++ +  L  +V+  Y+R +    RG   V G
Sbjct: 120 VVPFSGVRRLLPIPETWREARVELKEGETIQLEAFLLHMVEMGYQRVERVESRGEMSVRG 179

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+ +P       +RV +F ++I+ I  F P   + +  V+ + +      +     ++
Sbjct: 180 GIIDFYPMTTR-WGYRVELFDDEIDSIRMFDPQDQRSVEKVQEVTVTPCKEVIASHQRMD 238

Query: 394 TAMKYIKEELKMRLIEL-EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            A       L+ +L ++ +++ +    Q L++ I  ++E+L        I  Y   L   
Sbjct: 239 QAADAAAMLLEEQLDKMTDRQAK----QHLKEEIHREIELLREHVYFDEIYKYISLLYPE 294

Query: 453 NPGEPPPTLFEYIPEDSLLFVDE 475
                  TL +Y+P D++L +DE
Sbjct: 295 R-----KTLADYMPADTILIIDE 312



 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 7/85 (8%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V   H ++   E  + I D   G++DVLV  +++  G+DIP    + + DADK G  
Sbjct: 847 DAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGL- 905

Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690
              + L Q  GR  R   S  I YA
Sbjct: 906 ---SQLYQLRGRVGR---SNRIAYA 924


>gi|114565647|ref|YP_752801.1| transcription-repair coupling factor [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114336582|gb|ABI67430.1| Transcription-repair coupling factor - superfamily II helicase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 1073

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 15/204 (7%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           L G+  + +  LL G++GS K F ++++++   R  + + P +  A  L  + + F    
Sbjct: 11  LCGVLQKRQNILLTGLSGSAKAFMLSEILKKQNRKLLCLLPEEEKAYDLARDLEAFIEPG 70

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
            +  F++   Y+  E     +   + +  S+   +D  R SA          I+ +  S 
Sbjct: 71  RLFMFLARDFYFAKENL---STLEVGRILSLQHCLDHPRQSA---------IIIATPGSF 118

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           IY + +  +  +  + L+ G   EQ+E+L  LV   Y+R D    +G F V G  I+IFP
Sbjct: 119 IYPLPAPSAMRESSLLLQQGKEKEQREILKKLVGGGYRRVDTVSRQGEFAVRGGIIDIFP 178

Query: 341 -SHLEDVAWRVSMFGNDIEEISEF 363
             H E    RV  FG  IE I  F
Sbjct: 179 LGHKEPC--RVEFFGELIESIHRF 200


>gi|326202452|ref|ZP_08192321.1| transcription-repair coupling factor [Clostridium papyrosolvens DSM
           2782]
 gi|325987570|gb|EGD48397.1| transcription-repair coupling factor [Clostridium papyrosolvens DSM
           2782]
          Length = 1174

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 135/304 (44%), Gaps = 19/304 (6%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           ++G + S K   +  +   +QR  + +  N++ A + Y +F +FF  + V Y        
Sbjct: 30  VIGPSDSQKVHMIYSLCTHLQRRGLYVTYNEMQARRAYEDF-SFFLGDDVLY-------- 80

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
               Y P+       E+  N+ I +   +  R L      IV+S+ + I  I  VE +  
Sbjct: 81  ----YPPKETMLYNIEARSNDIIYQRTRTLLRCLEGNYKLIVMSAEALIQMISPVELFRG 136

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
            +V   +G  ++  EL+S LV   Y+R +    +  F V G  I+IF  + E    R+ +
Sbjct: 137 GVVDFSVGLQIDLDELVSKLVLYGYERVEAVEGKAQFAVRGGIIDIFAVNSEH-PVRIEL 195

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           F  +++ I  F   T +   ++E  +I      V    +    +  IK++L   + +L++
Sbjct: 196 FDTEVDSIRYFDETTQRSTNSIEECRIAPARDVVYKDISKEAIVSKIKKDLADYVKKLKQ 255

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           +      + + +R+  D++ L        I+ Y  Y+      E P ++ +YI  +S++ 
Sbjct: 256 KDNSEGVKNISKRVEEDIDNLVEHHYFPGIDRYLPYIL-----ETPASVIDYIERESIVV 310

Query: 473 VDES 476
           +DE+
Sbjct: 311 LDET 314



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H ++   E  +++     G++DVLV   ++  GLD+P    + + DAD+ G    
Sbjct: 864 RVAVAHGQMNEKELEDVMYGFINGEYDVLVCTTIIESGLDMPNVNTIVVEDADRMGL--- 920

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 921 -SQLYQIRGRVGRS 933


>gi|331084270|ref|ZP_08333375.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401805|gb|EGG81382.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 1182

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 138/324 (42%), Gaps = 30/324 (9%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRP-------AIVMAPNKILAAQLYSEFKNFFPHN 220
           E +  L G   + K   M  + EAM++         +++A N + A +LY +++      
Sbjct: 25  EGILQLSGCVETQKAHIMYGLFEAMKKKTGQEKANCLIIAENDLKAKELYEDYRL----- 79

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS- 279
                     Y +   + P  D    +       + + R     +LLE+    V++S+  
Sbjct: 80  ----------YNREVMFYPAKDLIFFEADVHGNLLTKERMKVLAALLEKKGVTVITSMGG 129

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
           C+  +  +E+  + ++  +    ++  +L   L+   Y++       G F   G  I+IF
Sbjct: 130 CMDYLLPLETIEKHVLHFQSDSPLDMDKLKKQLLGMGYEKNAQAEAPGQFSFRGGIIDIF 189

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P   ED   R+ ++G++I+ I  F   + + I N++ I IY  +  +     L   +K I
Sbjct: 190 PL-TEDNPVRIELWGDEIDSIRSFDAESQRSIENLDEITIYPAAEILLSDEVLKKGIKKI 248

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
           +++    + +        EA RL+Q +T  LE L       + E++ RY       +   
Sbjct: 249 QKDRDAAVQKFRDAFLTEEAGRLKQVVTETLENLTEFHDFSAAEHFLRYFY-----KDVV 303

Query: 460 TLFEYI-PEDSLLFVDESHVTIPQ 482
           T  +Y   E++L+ +DE++  + Q
Sbjct: 304 TFTDYFDTENTLILLDETNRLLEQ 327


>gi|139438721|ref|ZP_01772205.1| Hypothetical protein COLAER_01207 [Collinsella aerofaciens ATCC
           25986]
 gi|133775801|gb|EBA39621.1| Hypothetical protein COLAER_01207 [Collinsella aerofaciens ATCC
           25986]
          Length = 1210

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 17/226 (7%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           A+  +  G+ + E V L   V+ SG+T   A       RP + +   +  A +       
Sbjct: 15  ALQAVEAGLDAGEDVTL--AVSQSGRTLMAAAQFARRPRPTVYIVSGEDAADRAARSLAA 72

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
           +     V  F             P    Y  +E + ++ +   R  A   ++  ++CI+V
Sbjct: 73  YVGLAHVCRF-------------PERKDYPWREQAPDDAVVAQRCEALGRIVRGDNCIMV 119

Query: 276 SSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +S  + +  +  VES         +G+ +   E+   LV   Y         G FRV GD
Sbjct: 120 ASARALLRCVPPVESRYWESTTFAVGEEIPFDEVPQRLVGMGYTNAGAADAPGLFRVHGD 179

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++E+FP+  E    R+  FG++I+ I      TGQ I N ++I+I+
Sbjct: 180 TVEVFPAQ-EKAPVRIEFFGDEIDRIRRMVSSTGQTIGNEDSIEIF 224


>gi|317499346|ref|ZP_07957616.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893381|gb|EFV15593.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 948

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/240 (20%), Positives = 108/240 (45%), Gaps = 7/240 (2%)

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIV 295
           Y+P  D            I R R  A + +++      V ++  +   +  +       +
Sbjct: 78  YIPAKDPLFYTADVHGNAIARDRMLAIKKIVDDKCGTFVMTIDAVMDQVVPLSDIKNHKM 137

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
             K+G+++E+  +    V + Y++       G F V G  I+IFP + ++  +R+ ++G+
Sbjct: 138 TFKMGETLEEATIAEEFVARGYEKAPFVEAPGEFAVRGGIIDIFP-YTQESPYRIELWGD 196

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F   + + I  V+T+ IY  S  +  +P +   ++ ++E+ +    + +KE +
Sbjct: 197 EIDSIRSFDKESQRSIEEVDTLTIYPASEIILNQPRIEHGLRNMEEDYEKLSQKFKKEKK 256

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
             +  RL + +    E L        +E Y  Y       E    + +Y PE+S++++DE
Sbjct: 257 YDQEVRLRKEMDRVREELRELHMLIGVEGYLPYFY-----ENTECILDYFPEESMIYMDE 311



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V + H ++K  E  EI+      + DVLV   ++  GLDIP    + I DA++ G L
Sbjct: 862 DAKVAFAHGQMKERELEEIMMGFMNHEIDVLVSTTIIETGLDIPNVNTMIIHDANQLG-L 920

Query: 666 RSKTSLIQTIGRAARN 681
                L   +GR+ RN
Sbjct: 921 SQLYQLRGRVGRSNRN 936


>gi|23097518|ref|NP_690984.1| transcription-repair coupling factor [Oceanobacillus iheyensis
           HTE831]
 gi|22775741|dbj|BAC12019.1| transcription-repair coupling factor (TRCF) [Oceanobacillus
           iheyensis HTE831]
          Length = 1173

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 140/322 (43%), Gaps = 27/322 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+ S  K Q++ G++GS ++  ++ + E+++RP +++      A QLY +F   
Sbjct: 14  IHSIVNGVTSGMKEQMIAGLSGSARSLVISAIHESIRRPVLIVTHQLAQAQQLYDDFVEL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI-NEQIDRMRHSATRSLLERNDCIVV 275
                V              Y+   +  I  E +I + ++   R  A          I++
Sbjct: 74  VDDERV--------------YLYPVNELIASEIAIASPELRAQRIEALTEWTRHKSGILI 119

Query: 276 SSVSCIYGIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           + V+ +  I   ++Y     +  K+G+ ++    LSSLV   Y+   +    G F   G 
Sbjct: 120 APVAALKRILPPQNYWDNYQLLFKLGNDIKIDHYLSSLVDMGYEHASMVTSPGEFSKRGG 179

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I+I+P   E    R+ +F  +++ I  F   + + +  ++ + I   S  +     L  
Sbjct: 180 IIDIYPI-TEKHPIRIELFDEEVDSIRYFDAESQRSLDKLDEVTIGPASELLLTDEDLLK 238

Query: 395 AMKYIKEELKMRLIELEKEGRLLEA-QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             + ++E L   L ++ K     EA ++L + I +D+   +     Q +  Y  YL    
Sbjct: 239 TSEQLEEALATTLKKVNKP----EAKEQLVEVIEHDITRFKQLERFQEMYKYIGYLYSN- 293

Query: 454 PGEPPPTLFEYIPEDSLLFVDE 475
               P +L +Y+P + L+F DE
Sbjct: 294 ----PASLLDYLPSNGLVFFDE 311


>gi|256848382|ref|ZP_05553825.1| transcription-repair coupling factor [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714980|gb|EEU29958.1| transcription-repair coupling factor [Lactobacillus coleohominis
           101-4-CHN]
          Length = 1179

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/314 (19%), Positives = 136/314 (43%), Gaps = 24/314 (7%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           G+H   + QL+ GV GS KT  +A + +  + P +V+  +      L ++ +N  P   V
Sbjct: 19  GLHDGGR-QLVTGVGGSAKTALLATIQQNSKTPQVVVCDSLFHMQSLAADLENLLPETVV 77

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
             F             P  ++   + ++ +      R  A  +LL     ++V++   + 
Sbjct: 78  YQF-------------PVEESLAMEIATSSPDFRLQRVQAMNALLNGQSAVIVTATGGLR 124

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             + + E++S   +++KIG  ++ ++    L+   Y+RQ + +  G F V G  I+I+  
Sbjct: 125 RPLVAPETFSDARLEIKIGGEIDPQQTAQKLMMMGYQRQKMVMAPGDFAVRGSIIDIYAL 184

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
           + +    R+ +F  +++ +  F   + + I NV+ + +   +  +  +  L    + +  
Sbjct: 185 NTK-YPVRIDLFDTEVDSLRYFEANSQRSIENVQAVTVLPATDLIIDQQRLPALQQQLTT 243

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           E +    +   E    +A+++E      LE L+       +  Y+  +  +     P  L
Sbjct: 244 EYETLHEQASDEQ---DARQIENHFRPLLEGLKAGNLENGLLTYADMVYPQ-----PANL 295

Query: 462 FEYIPEDSLLFVDE 475
            +Y+P D  L VD+
Sbjct: 296 LDYLPADGTLIVDD 309



 Score = 37.7 bits (86), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H ++   +   ++ D   G++DVLV  +++  G+DIP    + + +AD+ G    
Sbjct: 857 RVADIHGQMSEAQLEGVLYDFIRGEYDVLVTTSIIETGVDIPNVNTLFVENADRMGL--- 913

Query: 668 KTSLIQTIGRAARN 681
              L Q  GR  R+
Sbjct: 914 -AQLYQIRGRIGRS 926


>gi|160878272|ref|YP_001557240.1| transcription-repair coupling factor [Clostridium phytofermentans
           ISDg]
 gi|160426938|gb|ABX40501.1| transcription-repair coupling factor [Clostridium phytofermentans
           ISDg]
          Length = 1179

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 132/315 (41%), Gaps = 23/315 (7%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  N I A ++Y + K  +  N   Y              P  D            I 
Sbjct: 53  LVITYNDIKAKEIYEDLK-LYDRNVYLY--------------PAKDIIFYSADIHGNAIV 97

Query: 257 RMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           R R    ++LLER    VV+++   +  +  ++  S  I+ +K   ++E + L   L+  
Sbjct: 98  RERMRILKNLLERKPMTVVATIDGGMDKLLPLDYLSDKIICIKEDSTIEIECLSEKLIHL 157

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y+RQ      G F + G  I+I+P   E+  +R+ ++G++++ I  F   + + I  V 
Sbjct: 158 GYERQGQVENPGEFAIRGGIIDIYPL-TEEAPYRIELWGDEVDSIRTFDVGSQRSIERVS 216

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
           T  IY  S  +     L   +  +  E K  + +L  E +  EA R+ Q +    E LE 
Sbjct: 217 TAVIYPASEIILEPEALKNGLHKLNIEQKEYVGKLRGELKTEEAARIHQIVEEFKENLEC 276

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED-SLLFVDESHVTIPQISGMYRGDFHRK 494
                ++++Y R+   +       + F+Y   D S++F DE +    +   ++       
Sbjct: 277 LQGSLNLDSYIRFFYDKT-----CSFFDYFANDSSIIFADEPNRLAEKGEAVFTEFSESM 331

Query: 495 ATLAEYGFRLPSCMD 509
               E G+ LPS MD
Sbjct: 332 VGRIEKGYILPSQMD 346


>gi|311070702|ref|YP_003975625.1| transcription-repair coupling factor [Bacillus atrophaeus 1942]
 gi|310871219|gb|ADP34694.1| transcription-repair coupling factor [Bacillus atrophaeus 1942]
          Length = 1177

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 135/323 (41%), Gaps = 35/323 (10%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           ++ G+H   + QLL G++GS ++   + + E + +P  ++  N   A ++  +       
Sbjct: 17  IVTGLHEGLREQLLAGLSGSARSVFTSALSEKINQPIFLITHNLYQAQKVTEDLTALLED 76

Query: 220 NAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            +V      E   S      PE    R D            I+R+    T         I
Sbjct: 77  QSVLLYPVNELISSEIAVASPELRAQRLDV-----------INRLTAGET--------PI 117

Query: 274 VVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           VV+ V+ +   +  V+ +    + +  G+ +E  +L S LV+  Y+R D+    G F + 
Sbjct: 118 VVAPVAAVRRMLPPVDVWKNSQMTITTGEDIEPDQLSSRLVEVGYERSDMVSAPGEFSIR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  I+I+P   E    R+ +F  +++ I  F     + I  + ++ I      +      
Sbjct: 178 GGIIDIYPLTAEH-PVRIELFDTEVDSIRTFNSDDQRSIETLTSVSIGPAKELIIRAEEK 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
             A++ I + L   L +++ +    + + L   I++D E L    + Q +  Y  Y    
Sbjct: 237 ARAIEKIDKGLAASLKKVKADK---QKEILHMNISHDKERLSEGQTDQELVKYLSYFY-- 291

Query: 453 NPGEPPPTLFEYIPEDSLLFVDE 475
              E P +L +Y P D+LL +DE
Sbjct: 292 ---EKPASLLDYTPPDTLLLLDE 311



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V Y H ++   E   ++ +   G+ DVLV   ++  G+DIP    + + D DK G  
Sbjct: 858 DAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDKMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|312871549|ref|ZP_07731642.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           3008A-a]
 gi|311092944|gb|EFQ51295.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           3008A-a]
          Length = 1110

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 27/246 (10%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F        P   +  T   +     +++++D M       LL +   
Sbjct: 68  LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  +          K+Y 
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233

Query: 382 NSHYVT 387
           N  Y T
Sbjct: 234 NEDYTT 239


>gi|323465804|gb|ADX69491.1| Transcriptional repair coupling factor [Lactobacillus helveticus
           H10]
          Length = 1165

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 63/308 (20%), Positives = 129/308 (41%), Gaps = 29/308 (9%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + +++  ++ P I++  N+  A  LY E     P  +V+ F   
Sbjct: 24  KNSLITGANAGAFSLLLKQIVTELKTPLILVEENENKAQNLYGELSAILPDGSVQIF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                P      T T +     ++ +I+     A   LL +   IVV++   + Y +   
Sbjct: 81  -----PVDATIATQTAVSSPDELSNRIE-----ALNFLLSKKSGIVVTTPQGLQYKLSDP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           + ++Q     + G   E  +L   LV   YK++ +    G F + GD ++++P   E+  
Sbjct: 131 QEFAQAKKDFEPGKEYELTDLNKWLVSLGYKKEALVARPGEFAIRGDILDVYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ I EF   T +  + ++ ++I A    V     + TA + I++++    
Sbjct: 190 VRIEFFGDEIDTIKEFDLATQRSQKEIDHVEISAAQDRVFSVEAIKTAAEAIEQDMG--- 246

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                       + ++   T  L+ L   G   +      YL  +     P +L EY+ +
Sbjct: 247 ------DAPAPDKAVKDHFTIALDALNAGGLPDNYAFLVDYLIKK-----PSSLLEYLDK 295

Query: 468 DSLLFVDE 475
           +  + +D+
Sbjct: 296 NGQILIDD 303


>gi|312872569|ref|ZP_07732637.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2062A-h1]
 gi|311091931|gb|EFQ50307.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2062A-h1]
          Length = 1110

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 27/246 (10%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F        P   +  T   +     +++++D M       LL +   
Sbjct: 68  LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  +          K+Y 
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233

Query: 382 NSHYVT 387
           N  Y T
Sbjct: 234 NEDYTT 239


>gi|312874291|ref|ZP_07734323.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2052A-d]
 gi|311090164|gb|EFQ48576.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2052A-d]
          Length = 1110

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 27/246 (10%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F        P   +  T   +     +++++D M       LL +   
Sbjct: 68  LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  +          K+Y 
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233

Query: 382 NSHYVT 387
           N  Y T
Sbjct: 234 NEDYTT 239


>gi|312874973|ref|ZP_07734992.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2053A-b]
 gi|311089718|gb|EFQ48143.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2053A-b]
          Length = 1110

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 27/246 (10%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F        P   +  T   +     +++++D M       LL +   
Sbjct: 68  LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  +          K+Y 
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233

Query: 382 NSHYVT 387
           N  Y T
Sbjct: 234 NEDYTT 239


>gi|118578938|ref|YP_900188.1| transcription-repair coupling factor [Pelobacter propionicus DSM
           2379]
 gi|118501648|gb|ABK98130.1| transcription-repair coupling factor [Pelobacter propionicus DSM
           2379]
          Length = 1177

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 136/326 (41%), Gaps = 33/326 (10%)

Query: 152 DQPAAI---AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           D P+ I   A +L  +    +  LL G+ GS     +A ++    R  +V+ P++  A +
Sbjct: 5   DTPSRISHTATILDALERGSRHILLPGLKGSSPACILADILARSTRTLLVLTPDQAAADE 64

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
              E   F   +        +D     A  P  D    +  ++     R+++   R+++ 
Sbjct: 65  FLRELTFFASPSHAPLSFPAWDMAPFSATSPHPDISGARLDTLF----RLQNGLARAVV- 119

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
                V +++  + G G     S  +V    G+  E+ ELL  LVK  Y    +   RGT
Sbjct: 120 ---MPVAAALQRVLGRGLFSESSCYLVS---GEEFERDELLGRLVKMGYANVPLVEDRGT 173

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           F V G  ++IFP +L     R+  FG+  E I  F PLT + +  +E + +  +   +  
Sbjct: 174 FAVRGGILDIFPPNL-SAPVRIEFFGDTAETIRTFDPLTQRSLHPLEELVLLPSREII-- 230

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
               +  +  I   LK    +LE     + A R  +     LE L++    + +E     
Sbjct: 231 --LTDGVLADIAPRLKGCCDDLE-----IPANRRRE----ILENLKSAVYFRGVEYLQPL 279

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVD 474
           L   +PG    T+F+Y P+ SL  +D
Sbjct: 280 L---HPGL--ETIFDYAPDASLALLD 300


>gi|309804680|ref|ZP_07698745.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           09V1-c]
 gi|308166072|gb|EFO68290.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           09V1-c]
          Length = 1110

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 27/246 (10%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F        P   +  T   +     +++++D M       LL +   
Sbjct: 68  LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  +          K+Y 
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233

Query: 382 NSHYVT 387
           N  Y T
Sbjct: 234 NEDYTT 239


>gi|309807000|ref|ZP_07700982.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           03V1-b]
 gi|308166620|gb|EFO68817.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           03V1-b]
          Length = 1110

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 27/246 (10%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F        P   +  T   +     +++++D M       LL +   
Sbjct: 68  LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  +          K+Y 
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233

Query: 382 NSHYVT 387
           N  Y T
Sbjct: 234 NEDYTT 239


>gi|295401980|ref|ZP_06811942.1| transcription-repair coupling factor [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109202|ref|YP_003987518.1| transcription-repair coupling factor [Geobacillus sp. Y4.1MC1]
 gi|294975982|gb|EFG51598.1| transcription-repair coupling factor [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311214303|gb|ADP72907.1| transcription-repair coupling factor [Geobacillus sp. Y4.1MC1]
          Length = 1177

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 139/320 (43%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ GI +  K QL++G++GS ++  ++ + +   RP +V+  N   A ++Y +    
Sbjct: 14  IRSIIGGIEAGLKEQLIVGLSGSARSVFISSLYKETDRPLLVITHNLFQAQKIYDDLVQL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V        +  P   V  T+  I       ++++ M +       +R+  +V+ 
Sbjct: 74  LGTEEV--------FLYPVNEVIATELAIASPELKAQRLEVMNYWT-----KRDKGVVIC 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +   I+ L++  +++ +      V+  YKR       G F V G  
Sbjct: 121 PVAGLRRLLPPVSLWKNNILTLEVQQNIDVEYCKKQFVQMGYKRVATVSAPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E + +R+ +F  +IE I  F     +    V  I I      +     L   
Sbjct: 181 IDIYPLTAE-LPYRIELFDTEIESIRTFTADDQRSRDEVRQITIGPADEMIVYGEMLERG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +  I+  L   L +L+ E      Q L + I+ +LE L+     Q IE   +Y+      
Sbjct: 240 IARIEAGLTESLHKLKDEK---AKQLLLEHISSELEQLK---QGQEIEQQYKYMALFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           E P +L +Y+PE+ +L +DE
Sbjct: 292 EEPASLLDYMPENGILLMDE 311



 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 6/87 (6%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE++++ + E   RV Y+H  +   E    +     G++DVLV   ++  G+DIP    +
Sbjct: 849 AEEISQLVPE--ARVTYVHGRMSETELESTMLAFLEGQYDVLVTTTIIETGVDIPNVNTL 906

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681
            + DAD+ G     + L Q  GR  R+
Sbjct: 907 IVYDADRMGL----SQLYQLRGRVGRS 929


>gi|325913119|ref|ZP_08175489.1| transcription-repair coupling factor [Lactobacillus iners UPII
           60-B]
 gi|325477540|gb|EGC80682.1| transcription-repair coupling factor [Lactobacillus iners UPII
           60-B]
          Length = 1110

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 27/246 (10%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F        P   +  T   +     +++++D M       LL +   
Sbjct: 68  LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  +          K+Y 
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233

Query: 382 NSHYVT 387
           N  Y T
Sbjct: 234 NEDYTT 239


>gi|309803761|ref|ZP_07697847.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           11V1-d]
 gi|308164170|gb|EFO66431.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           11V1-d]
          Length = 1110

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 27/246 (10%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F        P   +  T   +     +++++D M       LL +   
Sbjct: 68  LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  +          K+Y 
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233

Query: 382 NSHYVT 387
           N  Y T
Sbjct: 234 NEDYTT 239


>gi|290968874|ref|ZP_06560411.1| transcription-repair coupling factor [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781170|gb|EFD93761.1| transcription-repair coupling factor [Megasphaera genomosp. type_1
           str. 28L]
          Length = 1095

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 17/209 (8%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           + GV GS K+F  AK I  MQ P +++A  +   AQ  ++ +   P   +  F     + 
Sbjct: 29  IYGVGGSAKSFITAKGIRNMQHPVLIIAVGREQVAQWMADLQFLLPEMPLYTF----PFV 84

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI--YGIGSVESY 290
             E +     T ++    + EQ+  + H     L ER  CIV+++      Y I S E+ 
Sbjct: 85  TSEVFT----TAVKSLERVAEQMKVLAH-----LRERKPCIVIAAAEEAAQYTI-SPENL 134

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
               V L   +S E++ L+  L++  Y+R D+   RG F V GD I+I+  +  D   R+
Sbjct: 135 DAAAVPLCCHESYERQVLVEQLIQSGYERVDLVERRGHFSVRGDIIDIYAVNHRD-PLRL 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             FG+ ++ +  F        + VE ++I
Sbjct: 194 EFFGDTLDSMRFFEVQRQISCQAVEQVRI 222



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM E+L   L E  IR+ +       LE  E + D   GK+D+L+  +L+  GLD+    
Sbjct: 772 RMQEELAALLPELTIRMAHGQMSGGKLE--EAMFDFYEGKYDLLLCSSLVENGLDVANAN 829

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I DAD  G     + L Q  GR  R+
Sbjct: 830 TILIYDADHFGL----SQLYQMRGRVGRS 854


>gi|219666201|ref|YP_002456636.1| transcription-repair coupling factor [Desulfitobacterium hafniense
           DCB-2]
 gi|219536461|gb|ACL18200.1| transcription-repair coupling factor [Desulfitobacterium hafniense
           DCB-2]
          Length = 1197

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 154/347 (44%), Gaps = 42/347 (12%)

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
           K I  +E  Q++  +TGS K    A++I+   +P +++  ++ LA +  ++ +++ P   
Sbjct: 38  KAISYKEWPQMIYNLTGSQKPAFAAQLIQK-GKPGLIITYSEELAQKWVNDLRSWLPGED 96

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC-IVVSSVSC 280
           V YF S         ++P       +E++I    +R+R      L + N C +VV +++ 
Sbjct: 97  VLYFPS-------SEWLPFEVLGKSRETTI----ERIR--VLNRLAQDNQCTVVVPALAV 143

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
                S   + + I++LK G S + K+L   L    Y+R D+   +G F + G  ++I P
Sbjct: 144 NQRSFSRRRWQEYILELKEGTSYDLKDLAQKLSTAGYERLDVVDGKGQFAIRGGIMDIAP 203

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
             L+    RV  F ++++ I  F   T +    ++++KI      V     L      ++
Sbjct: 204 --LDGEPLRVEFFDDEVDSIRVFDLETQKSTETLKSVKIPPALEVVIRPEELEKLGWEVR 261

Query: 401 EELKMRLIELEKEGR-------LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            + + +   L + GR       + +AQR+E+R       L+T    +SI  Y   L    
Sbjct: 262 AQARKQAGRLNRSGRSDVAEQVMKQAQRIEER-------LKTGRVDESIYPYLSLLE--- 311

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
             EP    F  + +D  + +DE      Q+      +F +K  L EY
Sbjct: 312 --EPLEPFFSLLSQDHYVILDEPLRLKEQL------EFQQKERLEEY 350


>gi|323691738|ref|ZP_08105998.1| transcription-repair coupling factor [Clostridium symbiosum
           WAL-14673]
 gi|323504216|gb|EGB20018.1| transcription-repair coupling factor [Clostridium symbiosum
           WAL-14673]
          Length = 1179

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 131/304 (43%), Gaps = 21/304 (6%)

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS------YYDY--YQPEA 236
           M + +E  Q P +V        A L SE     P   +  +        Y DY  + P+ 
Sbjct: 18  MNRELERGQGPLLVSGCMDSQKAHLISELTKEIPWKLIVTYDDQRARELYEDYRCFSPDV 77

Query: 237 YV-PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMI 294
           Y+ P  D            + R R    + L E +   V+++V  +   +  +E+  +  
Sbjct: 78  YLYPARDLLFYSSDIHGNLLTRQRMQVMKHLAEESGGAVITTVDGLMDHLLPLENLKRQC 137

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           +++  G++++  +L  SL    Y+R       G F V G  I+I+P   ED+ +R+ ++G
Sbjct: 138 LRVGSGEALDVDKLKVSLTGMGYERVAQVDGMGQFSVRGGIIDIYPL-TEDLPFRIELWG 196

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++++ I  F P + + +  ++   IY  +  V  R      ++ I++E    +  L ++ 
Sbjct: 197 DEVDSIRTFDPESQRSVEQLDEALIYPATELVLTREEAAAGIQKIEKEKNKYVKSLREQM 256

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL--FEYIPEDSL-L 471
           +  EA R+E  I+   E L+       + ++ RY         P T+    Y PE  L +
Sbjct: 257 KTEEAHRIESVISELTEGLKEGWRVHGLGSFIRYFC-------PETVSFLRYFPEGRLTV 309

Query: 472 FVDE 475
           F+DE
Sbjct: 310 FMDE 313



 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V + H ++   E   I+ D   G  DVLV   ++  GLDIP    + I DAD+ G     
Sbjct: 866 VTFAHGQMHEHELERIMLDFVNGDIDVLVSTTIIETGLDIPNANTIIIHDADRLGL---- 921

Query: 669 TSLIQTIGRAARN 681
           + L Q  GR  R+
Sbjct: 922 SQLYQIRGRVGRS 934


>gi|261403915|ref|YP_003240156.1| transcription-repair coupling factor [Paenibacillus sp. Y412MC10]
 gi|261280378|gb|ACX62349.1| transcription-repair coupling factor [Paenibacillus sp. Y412MC10]
          Length = 1175

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 149/350 (42%), Gaps = 31/350 (8%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           G+H+  + QL+ G++GS +   MA + +  QRP +V+  N   A ++  + +     + V
Sbjct: 21  GVHAGMREQLISGLSGSSRQILMAALHQDQQRPLLVVTHNMFSAQKIADDLQEALSSDQV 80

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
             +        P   +   ++ +    ++ ++ID +   A R        IVV+  S + 
Sbjct: 81  LLY--------PANELVAAESAVSSPETLAQRIDVLVRCA-RGF----RGIVVAPFSGVR 127

Query: 283 G-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             + + E  S   + L  G ++     L+ +++  Y+R +    RG   V G  I+ +P 
Sbjct: 128 RLLPAPEVMSDARIVLHDGGTLVLDAFLNRMIEMGYERVERVERRGEMSVRGGIIDFYPM 187

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               +A+RV +F  DI+ I  F P   + I  V  + I      +     L+   + +  
Sbjct: 188 TTA-MAYRVELFDEDIDSIRTFDPTDQRSIDKVREVMITPCKEIIADAERLSRTAETV-- 244

Query: 402 ELKMRLIELEKEGRLLEAQ---RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
              +RL+E + E R+ + Q   RL   I  ++EML        I  Y   L       P 
Sbjct: 245 ---VRLLEAQLE-RMSDRQAKLRLRDEIHREVEMLRERIYFPEIYKYISLLY------PE 294

Query: 459 PT-LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
            T L++Y+P+D++L +DE    +     + R +      L + G  LP  
Sbjct: 295 KTNLYDYMPKDTILIMDEPARLLETAKQLERDEAEWNLHLMQNGKSLPDL 344



 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H ++   E  + I D   G++DVLV  +++  G+DIP    + + DADK G    
Sbjct: 849 RVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGL--- 905

Query: 668 KTSLIQTIGRAARNVNSKVILYA 690
            + L Q  GR  R   S  I YA
Sbjct: 906 -SQLYQLRGRVGR---SNRIAYA 924


>gi|227888873|ref|ZP_04006678.1| transcription-repair coupling factor [Lactobacillus johnsonii ATCC
           33200]
 gi|227850566|gb|EEJ60652.1| transcription-repair coupling factor [Lactobacillus johnsonii ATCC
           33200]
          Length = 1165

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 127/308 (41%), Gaps = 27/308 (8%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           EK  LL GV        + ++++A Q+P I++  N+  A  L  E  N  P + V  F  
Sbjct: 23  EKRSLLTGVNSGAFAAVLMQMLKAWQQPLILVEDNEEKAQTLLDELGNLLPDDMVFGF-- 80

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
                 P      T T I     +++++  +   A +    R   +VV+  +  Y +   
Sbjct: 81  ------PVDATIATQTAIASPDELSQRLQTLEFLAEK----RAGIVVVTPQALQYKLSDP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             +++     K     +  +L   L +  Y+R+ I    G F   GD ++I+P   E+  
Sbjct: 131 RDFTKAKKIFKPEAEFDLDKLTEWLTQAGYRRESIVARPGEFARRGDILDIYPWDQEN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++++ + EF   T + +  +++I I      V        A++ IK+++   +
Sbjct: 190 IRIEFFGDEVDTVKEFDSATQRSLEEIDSISIGPALDRVFSPHNFQEAVEKIKQDMSESI 249

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
            E E          ++      +++LE  G   +      YL  R+       L +Y+ +
Sbjct: 250 AEKES---------VKNHFVKAIDLLEAGGLPDNYAFLIDYLLPRS-----FNLIDYLDK 295

Query: 468 DSLLFVDE 475
           D LL  D+
Sbjct: 296 DGLLLFDD 303



 Score = 37.7 bits (86), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           ++ Y+H  +   +  +I+      +FD+LV   ++  G+D+P    + + DAD  G L  
Sbjct: 851 KIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVEDADHYG-LSQ 909

Query: 668 KTSLIQTIGRAAR 680
              L   IGR+AR
Sbjct: 910 LYQLRGRIGRSAR 922


>gi|220930453|ref|YP_002507362.1| transcription-repair coupling factor [Clostridium cellulolyticum
           H10]
 gi|220000781|gb|ACL77382.1| transcription-repair coupling factor [Clostridium cellulolyticum
           H10]
          Length = 1174

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 137/305 (44%), Gaps = 21/305 (6%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           ++G + S K   +  +   +Q+  + +  N++ A ++Y +F +FF  + V Y+       
Sbjct: 30  VIGPSDSQKVHLIYSLCTHLQKRGLYITYNEMQARRVYDDF-SFFLGDDVLYY------- 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYS 291
                 P  +T +    + +  I   R     + LE N   +V+S+ + I  I  VE + 
Sbjct: 82  ------PPKETMLYNVEARSNDIIYQRTKTLLNCLEGNYKMVVMSAEALIQMISPVELFR 135

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           + I+   +G  V   EL+S LV   Y+R +    +  F V G  I++F  + E    R+ 
Sbjct: 136 EGIMDFYVGSQVNLDELVSKLVLYGYERVESVEGKAQFAVRGGIIDVFAVNSEH-PVRIE 194

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F  D++ I  F   T +   +++  +I      V    +    +  IK++L   + +L+
Sbjct: 195 LFDTDVDSIRHFDETTQRSTNSIDECRIAPARDVVYKEVSREGIISKIKKDLADYIKKLK 254

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
           ++      + + +R+  D++ L        I+ Y  Y+      E P ++ +YI  +S++
Sbjct: 255 QKENREGVKNISKRVEEDIDSLIEHHYFPGIDRYYPYIL-----ESPASVIDYIESESII 309

Query: 472 FVDES 476
            +DE+
Sbjct: 310 IMDET 314



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H ++   E  +++     G++DVLV   ++  GLD+P    + + DAD+ G    
Sbjct: 864 RVAVAHGKMNEKELEDVMYGFINGEYDVLVCTTIIESGLDMPNVNTIVVEDADRMGL--- 920

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 921 -SQLYQIRGRVGRS 933


>gi|256827273|ref|YP_003151232.1| transcription-repair coupling factor Mfd [Cryptobacterium curtum
           DSM 15641]
 gi|256583416|gb|ACU94550.1| transcription-repair coupling factor Mfd [Cryptobacterium curtum
           DSM 15641]
          Length = 1155

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 25/237 (10%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           +G+  S + F  A       +P +V+   +  AA        +   N V  F    DY  
Sbjct: 31  MGLAASARPFFTAARFARTPQPTLVIVAGEESAADFARTLSAYVGDNRVLRFFERKDY-- 88

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI-GSVESYSQ 292
           P A  P           ++      R  A  +L+E  +CIVV+S   +  + G V S   
Sbjct: 89  PTASTP-----------VDVHAVACRLQALHALVESRECIVVASSRALMRLMGPVRSRFY 137

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDI---GIIR-------GTFRVCGDSIEIFPSH 342
           + +    G  V+      ++   +   +++   G +        GTF V G +I+++P +
Sbjct: 138 LPLTFTAGMDVQSGSGERTIASFEAATEELVACGYLNTGELSGPGTFCVGGGTIDVWPGN 197

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           L     R+  FG++++EI    P TGQ I  ++ + IY    Y+  R  L+ A + +
Sbjct: 198 LS-YPVRIDFFGDEVDEIRRIVPATGQTIARIDKVDIYPLREYMPDRAALDRARRIL 253


>gi|89892935|ref|YP_516422.1| hypothetical protein DSY0189 [Desulfitobacterium hafniense Y51]
 gi|89332383|dbj|BAE81978.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1178

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 154/347 (44%), Gaps = 42/347 (12%)

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
           K +  +E  Q++  +TGS K    A++I+   +P +++  ++ LA +  ++ +++ P   
Sbjct: 19  KAVSYKEWPQMIYNLTGSQKPAFAAQLIQK-GKPGLIITYSEELAQKWVNDLRSWLPGED 77

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC-IVVSSVSC 280
           V YF S         ++P       +E++I    +R+R      L + N C +VV +++ 
Sbjct: 78  VLYFPS-------SEWLPFEVLGKSRETTI----ERIR--VLNRLAQDNQCTVVVPALAV 124

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
                S   + + I++LK G S + K+L   L    Y+R D+   +G F + G  ++I P
Sbjct: 125 NQRSFSRRRWQEYILELKEGTSYDLKDLAQKLSTAGYERLDVVDGKGQFAIRGGIMDIAP 184

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
             L+    RV  F ++++ I  F   T +    ++++KI      V     L      ++
Sbjct: 185 --LDGEPLRVEFFDDEVDSIRVFDLETQKSTETLKSVKIPPALEVVIRPEELEKLGWEVR 242

Query: 401 EELKMRLIELEKEGR-------LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            + + +   L + GR       + +AQR+E+R       L+T    +SI  Y   L    
Sbjct: 243 AQARKQAGRLNRSGRSDVAEQVMKQAQRIEER-------LKTGRVDESIYPYLSLLE--- 292

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
             EP    F  + +D  + +DE      Q+      +F +K  L EY
Sbjct: 293 --EPLEPFFSLLSQDHYVILDEPLRLKEQL------EFQQKERLEEY 331


>gi|329925538|ref|ZP_08280412.1| transcription-repair coupling factor [Paenibacillus sp. HGF5]
 gi|328939821|gb|EGG36161.1| transcription-repair coupling factor [Paenibacillus sp. HGF5]
          Length = 1175

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 148/350 (42%), Gaps = 31/350 (8%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           G+H+  + QL+ G++GS +   MA + +  QRP +V+  N   A ++  + +     + V
Sbjct: 21  GVHAGMREQLISGLSGSSRQILMAALHQDQQRPLLVVTHNMFSAQKIADDLQEALSSDQV 80

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
             +        P   +   ++ +    ++ ++ID +   A R        IVV+  S + 
Sbjct: 81  LLY--------PANELVAAESAVSSPETLAQRIDVLVRCA-RGF----RGIVVAPFSGVR 127

Query: 283 G-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             + + E  S   + L  G ++     L+ +++  Y+R +    RG   V G  I+ +P 
Sbjct: 128 RLLPAPEVMSDARIVLHDGGTLVLDAFLNRMIEMGYERVERVERRGEMSVRGGIIDFYPM 187

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               +A+RV +F  DI+ I  F P   + I  V  + I      +     L+     +  
Sbjct: 188 TTA-MAYRVELFDEDIDSIRTFDPTDQRSIDKVREVMITPCKEIIADAERLSRTADTV-- 244

Query: 402 ELKMRLIELEKEGRLLEAQ---RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
              +RL+E + E R+ + Q   RL   I  ++EML        I  Y   L       P 
Sbjct: 245 ---VRLLEAQLE-RMSDRQAKLRLRDEIHREVEMLRERIYFPEIYKYISLLY------PE 294

Query: 459 PT-LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
            T L++Y+P+D++L +DE    +     + R +      L + G  LP  
Sbjct: 295 KTNLYDYMPKDTILIMDEPARLLETAKQLERDEAEWNLHLMQNGKSLPDL 344



 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H ++   E  + I D   G++DVLV  +++  G+DIP    + + DADK G    
Sbjct: 849 RVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGL--- 905

Query: 668 KTSLIQTIGRAARNVNSKVILYA 690
            + L Q  GR  R   S  I YA
Sbjct: 906 -SQLYQLRGRVGR---SNRIAYA 924


>gi|154684574|ref|YP_001419735.1| hypothetical protein RBAM_000640 [Bacillus amyloliquefaciens FZB42]
 gi|154350425|gb|ABS72504.1| Mfd [Bacillus amyloliquefaciens FZB42]
          Length = 1177

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 51/331 (15%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF------ 213
           ++ G+H   K QLL G++GS ++   + + +  +RP   +  N   A ++  +       
Sbjct: 17  IVNGLHEGLKEQLLAGLSGSARSVFTSALAQETKRPIFFITHNLYQAQKVTEDLTALLGD 76

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           ++ F +   E   S      PE    R D  I + ++    +     +A R +L   +  
Sbjct: 77  QSVFLYPVNELISSEIAVASPELRAQRLDV-INRLTNGEAPVVVAPVAAVRRMLPPKELW 135

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
                            SQ+++ L  GD +E  +L + LV+  Y+R D+    G F + G
Sbjct: 136 ---------------KSSQLVISL--GDEIEPDQLSARLVEVGYERSDMVSAPGEFSIRG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+I+P   E    R+ +F  +++ I  F        R++ET+K  A    + P   L 
Sbjct: 179 GIIDIYPLTSEHPV-RIELFDTEVDSIRSF---NSDDQRSIETLKHVA----IGPAKEL- 229

Query: 394 TAMKYIKEELKMRLIELEKEG---------RLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
                I+ E K R +E   +G         +  + + L   I++D E L T  + Q +  
Sbjct: 230 ----IIRAEEKARAMERLDKGLADSLKKLKQDKQKEMLHINISHDKERLSTGQTDQELVK 285

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           Y  Y       E P +L +Y P D+LL +DE
Sbjct: 286 YLSYFY-----EKPASLLDYTPADTLLLLDE 311



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V Y H ++   E   ++ +   G+ DVLV   ++  G+DIP    + + D DK G  
Sbjct: 858 DAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDKMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|161506855|ref|YP_001576809.1| transcriptional repair coupling factor [Lactobacillus helveticus
           DPC 4571]
 gi|160347844|gb|ABX26518.1| transcriptional repair coupling factor [Lactobacillus helveticus
           DPC 4571]
          Length = 1165

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/308 (20%), Positives = 128/308 (41%), Gaps = 29/308 (9%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + +++  ++ P I++  N+  A  LY E     P  +V+ F   
Sbjct: 24  KNSLITGANAGAFSLLLKQIVTELKTPLILVEENENKAQNLYGELSAILPDGSVQIF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                P      T T +     ++ +I+     A   LL +   IVV++   + Y +   
Sbjct: 81  -----PVDATIATQTAVSSPDELSNRIE-----ALNFLLSKKSGIVVTTPQGLQYKLSDP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           + ++Q     + G   E  +L   LV   YK++ +    G F + GD ++++P   E+  
Sbjct: 131 QEFAQAKKDFEPGKEYELTDLNKWLVSLGYKKEALVARPGEFAIRGDILDVYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ I EF   T +    ++ ++I A    V     + TA + I++++    
Sbjct: 190 VRIEFFGDEIDTIKEFDLATQRSQEEIDHVEISAAQDRVFSVEAIKTAAEAIEQDMG--- 246

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                       + ++   T  L+ L   G   +      YL  +     P +L EY+ +
Sbjct: 247 ------DAPAPDKAVKDHFTIALDALNAGGLPDNYAFLVDYLIKK-----PSSLLEYLDK 295

Query: 468 DSLLFVDE 475
           +  + +D+
Sbjct: 296 NGQILIDD 303


>gi|329920532|ref|ZP_08277264.1| transcription-repair coupling factor [Lactobacillus iners SPIN
           1401G]
 gi|328936208|gb|EGG32661.1| transcription-repair coupling factor [Lactobacillus iners SPIN
           1401G]
          Length = 1110

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 109/246 (44%), Gaps = 27/246 (10%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F        P   +  T   +     +++++D M       LL +   
Sbjct: 68  LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV   YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVHCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  +          K+Y 
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233

Query: 382 NSHYVT 387
           N  Y T
Sbjct: 234 NEDYTT 239


>gi|163815685|ref|ZP_02207057.1| hypothetical protein COPEUT_01865 [Coprococcus eutactus ATCC 27759]
 gi|158448990|gb|EDP25985.1| hypothetical protein COPEUT_01865 [Coprococcus eutactus ATCC 27759]
          Length = 1186

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 138/338 (40%), Gaps = 33/338 (9%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G+ + F M  V +      ++   +K  A QLYS+ +                +Y  + Y
Sbjct: 37  GTDRVFLMNAVSDESSVKLVLTYSDK-RAEQLYSDLR----------------FYSRDVY 79

Query: 238 V-PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIV 295
           + P  D            I R R    R L+    C +V++V  ++  I ++   ++ I+
Sbjct: 80  MYPAKDILFFSADVHGNAITRKRMDVLRRLVSGEPCTIVATVDALFDKIPALSYMNKYII 139

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +     ++  +L   L    Y + D     G F V G  I+I+P   E+  +R+ M+ +
Sbjct: 140 NICTAQRLDVDDLRQKLSALGYDKVDNVEEPGQFAVRGGIIDIYPL-TEECPYRIDMWDD 198

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +++ I  F   + + I  V++I IY     V  +  +N  ++ I+ ELK    +L++   
Sbjct: 199 EVDTIKTFDAESQRSIETVDSIVIYPAGEIVLSQDRINRGIRKIEAELKPYAQKLKESFH 258

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                R+++ +    E L    +   +++Y  Y           +L + +P+DS + +DE
Sbjct: 259 TEAYARIKREVAELKEQLTEFSAVYGVDSYVDYFYS-----DTVSLIDCLPDDSYVLIDE 313

Query: 476 ----SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
               S       +G      HR     E G+ LP  M+
Sbjct: 314 TRKVSDRAATDETGFRSSMVHR----LEGGYVLPGQMN 347


>gi|325912458|ref|ZP_08174853.1| transcription-repair coupling factor [Lactobacillus iners UPII
           143-D]
 gi|325475800|gb|EGC78971.1| transcription-repair coupling factor [Lactobacillus iners UPII
           143-D]
          Length = 1110

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 111/246 (45%), Gaps = 27/246 (10%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A+L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADAKLINFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F        P   +  T   +     +++++D M       LL +   
Sbjct: 68  LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  Y+R D+    G F +
Sbjct: 115 IVISTPQSLQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYQRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  +          K+Y 
Sbjct: 175 RGDILDIYPLNIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233

Query: 382 NSHYVT 387
           N  Y T
Sbjct: 234 NEDYTT 239


>gi|315653944|ref|ZP_07906860.1| transcriptional repair coupling factor [Lactobacillus iners ATCC
           55195]
 gi|315488640|gb|EFU78286.1| transcriptional repair coupling factor [Lactobacillus iners ATCC
           55195]
          Length = 1110

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 109/246 (44%), Gaps = 27/246 (10%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F        P   +  T   +     +++++D M       LL +   
Sbjct: 68  LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV   YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVHCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  +          K+Y 
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233

Query: 382 NSHYVT 387
           N  Y T
Sbjct: 234 NEDYTT 239


>gi|309808765|ref|ZP_07702651.1| putative transcription-repair coupling factor [Lactobacillus iners
           LactinV 01V1-a]
 gi|308168001|gb|EFO70133.1| putative transcription-repair coupling factor [Lactobacillus iners
           LactinV 01V1-a]
          Length = 708

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 109/246 (44%), Gaps = 27/246 (10%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F        P   +  T   +     +++++D M       LL +   
Sbjct: 68  LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV   YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVHCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI----------KIYA 381
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  +          K+Y 
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADDQLDKLYQ 233

Query: 382 NSHYVT 387
           N  Y T
Sbjct: 234 NEDYTT 239


>gi|330719342|ref|ZP_08313942.1| excinuclease ABC subunit B [Leuconostoc fallax KCTC 3537]
          Length = 65

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 40/53 (75%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
           F + + Y P+GDQP AI+QL KG+  + K Q+LLG TG+GKTFT++ VI+ ++
Sbjct: 10  FDLVSKYKPTGDQPQAISQLTKGLKEKVKEQILLGATGTGKTFTISNVIQDIK 62


>gi|327182807|gb|AEA31254.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL
           1118]
          Length = 1164

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 126/308 (40%), Gaps = 29/308 (9%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + +++     P I++  N+  A  LY E  +    +A  YF   
Sbjct: 24  KNSLITGANAGAFSLLLKQIVSEPNAPLILIEENESKAQNLYGELNSILEDDAAHYF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                P      T T +     ++ +I  +       LL     IVV++   + Y + S 
Sbjct: 81  -----PVDATIATQTAVSSPDELSSRIQSLNF-----LLSGKPGIVVTTPQGLQYKLSSP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             +++   +       E  EL + LV   YK++ +    G F + GD ++I+P   E+  
Sbjct: 131 ADFAKARREFAPEKEYELTELNNWLVGAGYKKEALVARPGEFAIRGDILDIYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ I EF   + +  + +E + + A    V  +  +  A + IK+++    
Sbjct: 190 VRIEFFGDEIDTIKEFDLASQRSQKEIEQVTVAAAQDRVFAKDAIFNAAEKIKKDMV--- 246

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                      A+ ++      L+ LE  G   +      YL      E P +L EY+P+
Sbjct: 247 ------DAPAPAKAVKDHFAVALDNLEDGGLPDNYAFLVDYLI-----EKPSSLLEYLPK 295

Query: 468 DSLLFVDE 475
           +  + +D+
Sbjct: 296 NGEILLDD 303


>gi|228905850|ref|ZP_04069748.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
           200]
 gi|228853790|gb|EEM98549.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
           200]
          Length = 1176

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/320 (20%), Positives = 148/320 (46%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L E  + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAEGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E++K    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVKFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +++++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PED ++ +DE
Sbjct: 292 KEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|315037511|ref|YP_004031079.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL
           1112]
 gi|312275644|gb|ADQ58284.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL
           1112]
          Length = 1164

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 126/308 (40%), Gaps = 29/308 (9%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + +++     P I++  N+  A  LY E  +    +A  YF   
Sbjct: 24  KNSLITGANAGAFSLLLKQIVSEPNAPLILIEENESKAQNLYGELNSILEDDAAHYF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                P      T T +     ++ +I  +       LL     IVV++   + Y + S 
Sbjct: 81  -----PVDATIATQTAVSSPDELSSRIQSLNF-----LLSGKPGIVVTTPQGLQYKLSSP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             +++   +       E  EL + LV   YK++ +    G F + GD ++I+P   E+  
Sbjct: 131 ADFAKARREFAPEKEYELTELNNWLVGAGYKKEALVARPGEFAIRGDILDIYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ I EF   + +  + +E + + A    V  +  +  A + IK+++    
Sbjct: 190 VRIEFFGDEIDTIKEFDLASQRSQKEIEQVTVAAAQDRVFAKDAIFNAAEKIKKDMV--- 246

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                      A+ ++      L+ LE  G   +      YL      E P +L EY+P+
Sbjct: 247 ------DAPAPAKAVKDHFAVALDNLEDGGLPDNYAFLVDYLI-----EKPSSLLEYLPK 295

Query: 468 DSLLFVDE 475
           +  + +D+
Sbjct: 296 NGEILLDD 303


>gi|293375931|ref|ZP_06622192.1| transcription-repair coupling factor [Turicibacter sanguinis PC909]
 gi|292645453|gb|EFF63502.1| transcription-repair coupling factor [Turicibacter sanguinis PC909]
          Length = 1176

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 136/325 (41%), Gaps = 34/325 (10%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           L+K +   ++  LL GVT S     +  + E  QRP +++  N   A +LY +  N    
Sbjct: 17  LMKTLEGEQRNILLSGVTSSFYGPLLQMIYEKQQRPVVILMQNLYHAQRLYDQLSNLMDE 76

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKE---SSINEQIDRMRHSATRSLLERNDCIVVS 276
            +V  F                D +I  E   SS   +I+RM   A  S+LE    IV++
Sbjct: 77  GSVRLF--------------PMDEFITAEMLASSSELRIERMNTLA--SILENEVKIVIT 120

Query: 277 SVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+      + +S + Q  + L+ G   E  +L   LV+  Y         G F V G  
Sbjct: 121 HVAGATRFLTPKSIFEQAEIILECGHEYELDKLKRKLVELGYNSVRAVERMGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+IFP   E+   R+  F ++++ I  F   T + I  ++ I I      V     +   
Sbjct: 181 IDIFPM-TEENPIRIEFFDDEVDSIRYFSTETQRSIHQIQKISIPPTYELVYSDKQVEVF 239

Query: 396 MKYIKEELK--MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
              IK  L   ++L+++E + +L E      ++  D+E ++   + + +  Y   L    
Sbjct: 240 EAQIKSRLSKTLKLLDIETQDQLRE------KVFNDIENIKNHNNLEIMHKYISLLY--- 290

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHV 478
             E P TL  Y     ++++D + +
Sbjct: 291 --ENPDTLLSYFTNPLVIYIDYNRI 313


>gi|325955975|ref|YP_004286585.1| transcription-repair coupling factor [Lactobacillus acidophilus
           30SC]
 gi|325332540|gb|ADZ06448.1| transcription-repair coupling factor [Lactobacillus acidophilus
           30SC]
          Length = 1164

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 126/308 (40%), Gaps = 29/308 (9%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + +++     P I++  N+  A  LY E  +    +A  YF   
Sbjct: 24  KNSLITGANAGAFSLLLKQIVSEPNAPLILIEENESKAQNLYGELNSILEDDAAHYF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                P      T T +     ++ +I  +       LL     IVV++   + Y + S 
Sbjct: 81  -----PVDATIATQTAVSSPDELSSRIQSLNF-----LLSGKPGIVVTTPQGLQYKLSSP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             +++   +       E  EL + LV   YK++ +    G F + GD ++I+P   E+  
Sbjct: 131 ADFAKARREFAPEKEYELTELNNWLVGAGYKKEALVARPGEFAIRGDILDIYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ I EF   + +  + +E + + A    V  +  +  A + IK+++    
Sbjct: 190 VRIEFFGDEIDTIKEFDLASQRSQKEIEQVTVAAAQDRVFAKDAIFNAAEKIKKDMV--- 246

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                      A+ ++      L+ LE  G   +      YL      E P +L EY+P+
Sbjct: 247 ------DAPAPAKAVKDHFAVALDNLEDGGLPDNYAFLVDYLI-----EKPSSLLEYLPK 295

Query: 468 DSLLFVDE 475
           +  + +D+
Sbjct: 296 NGEILLDD 303


>gi|323485663|ref|ZP_08091001.1| hypothetical protein HMPREF9474_02752 [Clostridium symbiosum
           WAL-14163]
 gi|323401013|gb|EGA93373.1| hypothetical protein HMPREF9474_02752 [Clostridium symbiosum
           WAL-14163]
          Length = 1179

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 130/304 (42%), Gaps = 21/304 (6%)

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS------YYDY--YQPEA 236
           M + +E  Q P +V        A L SE     P   +  +        Y DY  + P+ 
Sbjct: 18  MNRELERGQGPLLVSGCMDSQKAHLISELTKEIPWKLIVTYDDQRARELYEDYRCFSPDV 77

Query: 237 YV-PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMI 294
           Y+ P  D            + R R    + L E +   V+++V  +   +  +E+  +  
Sbjct: 78  YLYPARDLLFYSSDIHGNLLTRQRMQVMKHLAEESGGAVITTVDGLMDHLLPLENLKRQC 137

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           +++  G++++  +L  SL    Y+R       G F V G  I+I+P   ED+ +R+ ++G
Sbjct: 138 LRVGSGEALDVDKLKVSLTGMGYERVAQVDGMGQFSVRGSIIDIYPL-TEDLPFRIELWG 196

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++++ I  F P + + +  ++   IY  +  V  R      +  I++E    +  L ++ 
Sbjct: 197 DEVDSIRTFDPESQRSVEQLDEALIYPATELVLTREEAAAGILKIEKEKNKYVKSLREQM 256

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL--FEYIPEDSL-L 471
           +  EA R+E  I+   E L+       + ++ RY         P T+    Y PE  L +
Sbjct: 257 KTEEAHRIESVISELTEGLKEGWRVHGLGSFIRYFC-------PETVSFLRYFPEGRLTV 309

Query: 472 FVDE 475
           F+DE
Sbjct: 310 FMDE 313



 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V + H ++   E   I+ D   G  DVLV   ++  GLDIP    + I DAD+ G     
Sbjct: 866 VTFAHGQMHEHELERIMLDFVNGDIDVLVSTTIIETGLDIPNANTIIIHDADRLGL---- 921

Query: 669 TSLIQTIGRAARN 681
           + L Q  GR  R+
Sbjct: 922 SQLYQIRGRVGRS 934


>gi|3511015|gb|AAD03810.1| transcription-repair coupling factor [Lactobacillus sakei]
          Length = 1045

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 15/210 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QLL G++GS KT  +A + +  ++P +++  N   A Q+  +  N    + +  F     
Sbjct: 26  QLLTGLSGSAKTLFLATIYKQQRQPLLIIESNMFQANQVAEDLANQLNGDQIYTF----- 80

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +  +    S  E++  +   AT         IVV+SV+ +   + +V  
Sbjct: 81  ---PVEEVMAAEIAVSSPESRAERVRTLSFLAT-----GKKGIVVTSVAGMRRLLPTVRQ 132

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +     Q+++G  V+ K L + L +  Y R  +    G F + GD I+IFP   E+   R
Sbjct: 133 WRDSQTQIEMGGEVDPKILGAQLAEMGYHRDKLVGKPGEFAMRGDIIDIFPLDTEN-PVR 191

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           + +F  +++ I  F   T + I N+E++ I
Sbjct: 192 IELFDTEVDAIRSFEADTQRSIENLESVAI 221



 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y H ++   +   +I D   GK+DVLV   ++  G+D+P    + + DAD  G     
Sbjct: 858 VGYAHGQMTEAQLEGVIYDFVQGKYDVLVTTTIIETGVDMPNVNTMIVEDADHYGL---- 913

Query: 669 TSLIQTIGRAARN 681
           + L Q  GR  R+
Sbjct: 914 SQLYQLRGRIGRS 926


>gi|227894501|ref|ZP_04012306.1| transcriptional repair coupling factor [Lactobacillus ultunensis
           DSM 16047]
 gi|227863660|gb|EEJ71081.1| transcriptional repair coupling factor [Lactobacillus ultunensis
           DSM 16047]
          Length = 1164

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/308 (20%), Positives = 131/308 (42%), Gaps = 29/308 (9%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+        +  + +++  ++ P I++  N+  A  LY E       +A +YF   
Sbjct: 24  KNSLITSANAGAFSLLLKQIVSELKAPLILLEENESKAQNLYGELNAILDDDAAQYF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                P      T T +     ++ +I      A   LL     I+V++   + Y + + 
Sbjct: 81  -----PVDATIATQTAVSSPDELSSRI-----QALNFLLSGRPGIIVTTPQGLQYKLSAP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           +++++           E  EL + LV+  YK++ +    G F + GD ++I+P   E+  
Sbjct: 131 QAFAEARRDFVPEKEYELSELNNWLVQSGYKKEALVARPGEFAIRGDILDIYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ I EF   + +  + ++ +++ A    V  R  +  A   IK+++    
Sbjct: 190 VRIEFFGDEIDTIKEFDLSSQRSQKEIDHVEVAAAQDRVFSREAILQAADKIKKDM---- 245

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                +      + ++   T  L+ LE  G  ++      YL      E P +L EY+P+
Sbjct: 246 -----QDAPAPDKAVKDHFTVALDNLEDGGLPKNYAFLVDYLI-----ENPSSLLEYLPK 295

Query: 468 DSLLFVDE 475
           +  + +D+
Sbjct: 296 NGQILLDD 303


>gi|325838706|ref|ZP_08166621.1| transcription-repair coupling factor [Turicibacter sp. HGF1]
 gi|325490756|gb|EGC93063.1| transcription-repair coupling factor [Turicibacter sp. HGF1]
          Length = 1176

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 136/325 (41%), Gaps = 34/325 (10%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           L+K +   ++  LL GVT S     +  + E  QRP +++  N   A +LY +  N    
Sbjct: 17  LMKTLEGEQRNILLSGVTSSFYGPLLQMIYEKQQRPVVILMQNLYHAQRLYDQLSNLMDE 76

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKE---SSINEQIDRMRHSATRSLLERNDCIVVS 276
            +V  F                D +I  E   SS   +I+RM   A  S+LE    IV++
Sbjct: 77  GSVRLF--------------PMDEFITAEMLASSSELRIERMNTLA--SILENEVKIVIT 120

Query: 277 SVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+      + +S + Q  + L+ G   E  +L   LV+  Y         G F V G  
Sbjct: 121 HVAGATRFLTPKSIFEQAEIILECGHEYELDKLKRKLVELGYNSVRAVERMGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+IFP   E+   R+  F ++++ I  F   T + I  ++ I I      V     +   
Sbjct: 181 IDIFPM-TEENPIRIEFFDDEVDSIRYFSTETQRSIHQIQKISIPPTYELVYSDKQVEVF 239

Query: 396 MKYIKEELK--MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
              IK  L   ++L+++E + +L E      ++  D+E ++   + + +  Y   L    
Sbjct: 240 EAQIKSRLSKTLKLLDIETQDQLRE------KVFNDIENIKNHNNLEIMHKYISLLY--- 290

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHV 478
             E P TL  Y     ++++D + +
Sbjct: 291 --ENPDTLLSYFTNPLVIYIDYNRI 313


>gi|308171946|ref|YP_003918651.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
           DSM 7]
 gi|307604810|emb|CBI41181.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
           DSM 7]
 gi|328910016|gb|AEB61612.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
           LL3]
          Length = 1177

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 137/331 (41%), Gaps = 51/331 (15%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           ++ G+H   K QLL G++GS ++   + + +  +RP   +  N   A ++  +       
Sbjct: 17  IVNGLHEGLKEQLLAGLSGSARSVFTSALAQETKRPIFFITHNLYQAQKVTEDLTALLGD 76

Query: 220 NAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            +V      E   S      PE    R D  I + ++    +     +A R +L   +  
Sbjct: 77  QSVFLYPVNELISSEIAVASPELRAQRLDV-INRLTNGEAPVVVAPVAAVRRMLPPKELW 135

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
                            SQ+++ L  GD +E  +L + LV+  Y+R D+    G F + G
Sbjct: 136 ---------------KSSQIVISL--GDDIEPDQLSARLVEVGYERSDMVSAPGEFSIRG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+I+P   E    R+ +F  +++ I  F        R++ET+K  A    + P   L 
Sbjct: 179 GIIDIYPLTSEH-PVRIELFDTEVDSIRSF---NSDDQRSIETLKTVA----IGPAKEL- 229

Query: 394 TAMKYIKEELKMRLIELEKEG---------RLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
                I+ E K R ++   +G         +  + + L   I++D E L T  + Q +  
Sbjct: 230 ----IIRAEEKARAMDRLDKGLADSLKKLKQDKQKEMLHINISHDKERLSTGQTDQELVK 285

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           Y  Y       E P +L +Y P D+LL +DE
Sbjct: 286 YLSYFY-----EKPASLLDYTPSDTLLVLDE 311



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V Y H ++   E   ++ +   G+ DVLV   ++  G+DIP    + + D DK G  
Sbjct: 858 DAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDKMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|328551756|gb|AEB22248.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
           TA208]
          Length = 1177

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 139/331 (41%), Gaps = 51/331 (15%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF------ 213
           ++ G+H   K QLL G++GS ++   + + +  +RP   +  N   A ++  +       
Sbjct: 17  IVNGLHEGLKEQLLAGLSGSARSVFTSALAQETKRPIFFITHNLYQAQKVTEDLTALLGD 76

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           ++ F +   E   S      PE    R D  I + ++    +     +A R +L   +  
Sbjct: 77  QSVFLYPVNELISSEIAVASPELRAQRLDV-INRLTNGEAPVVVAPVAAVRRMLPPKELW 135

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
                            SQ+++ L  GD +E  +L + LV+  Y+R D+    G F + G
Sbjct: 136 ---------------KSSQIVISL--GDDIEPDQLSARLVEVGYERSDMVSAPGEFSIRG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+I+P   E    R+ +F  +++ I  F        R++ET+K  A    + P   L 
Sbjct: 179 GIIDIYPLTSEH-PVRIELFDTEVDSIRSF---NSDDQRSIETLKTVA----IGPAKEL- 229

Query: 394 TAMKYIKEELKMRLIELEKEG---------RLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
                I+ E K R ++   +G         +  + + L   I++D E L T  + Q +  
Sbjct: 230 ----IIRAEEKARAMDRLDKGLADSLKKLKQDKQKEMLHINISHDKERLSTGQTDQELVK 285

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           Y  Y       E P +L +Y P D+LL +DE
Sbjct: 286 YLSYFY-----EKPASLLDYTPSDTLLVLDE 311



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V Y H ++   E   ++ +   G+ DVLV   ++  G+DIP    + + D DK G  
Sbjct: 858 DAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDGDKMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|260584473|ref|ZP_05852220.1| transcription-repair coupling factor [Granulicatella elegans ATCC
           700633]
 gi|260157991|gb|EEW93060.1| transcription-repair coupling factor [Granulicatella elegans ATCC
           700633]
          Length = 1174

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 100/210 (47%), Gaps = 19/210 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+LG+TG+ K   +A   E  + P +V+ P  + A QLY E                  
Sbjct: 27  QLVLGLTGAAKHLAVANAYENWKGPVVVVTPTMLQATQLYEEL---------------VQ 71

Query: 231 YYQPEAYVPRTDTYIEKESSINE-QIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVE 288
           +Y+ E Y+   +  +  E SI+  ++   R    + L      IVV  +S I   +  +E
Sbjct: 72  WYEDEVYLFTVEESLAAEYSIHSPEVVSNRIRTLQFLTTGEKGIVVVPLSGIQKPLVPLE 131

Query: 289 SYSQMIVQLKIGDS-VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
            + +  ++L +G++ +E ++L++ L +  Y+R+ +    G F V G  ++I+P + E   
Sbjct: 132 VWKKSTIELVVGETQLEVEDLVTKLGRMGYRREAMVATPGDFSVRGGIVDIYPLNQEH-P 190

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R+  F ++++ +  F   T + +  VE I
Sbjct: 191 IRLDFFDDELDSLRYFDAETQRSLEMVENI 220


>gi|123966148|ref|YP_001011229.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9515]
 gi|123200514|gb|ABM72122.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9515]
          Length = 1175

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 141/322 (43%), Gaps = 53/322 (16%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I +L+K I   +++ ++ G +   K+  +  + +   +  I+++PN+ +A + Y  F + 
Sbjct: 16  ITELVKRIEKNKELNII-GSSRYAKSIIINSLAKKENKNIILVSPNEEIAYKWYGYFNSI 74

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              N +        YY P   +P       KE+  + Q+  +         E+N  I+ +
Sbjct: 75  GNRNIL--------YYPPSKNLPYGSINKSKETEYS-QLSVISKLINNDKEEKN-IIITT 124

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
             S    +     + Q I+ L  G ++E KEL S LV   Y ++++    G++   G+ I
Sbjct: 125 ERSLQPHLIKKNIFKQKIITLNKGLAIEIKELTSQLVSLGYNKENLTSQEGSWSRRGEII 184

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ---KIRNVETIKIYANSHYVTPRPTLN 393
           +I+P + E +  R+  F N I++I E+ P+T +    I  VE +++  NS          
Sbjct: 185 DIYPVNNE-LPIRIEFFDNIIDKIREYDPVTQRTLDSINKVEIVQVGYNS---------- 233

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                I+E+L++    L  EG             ++ E + T        N  RYL    
Sbjct: 234 ----LIREKLEL----LSDEG------------VFNSEEITTKN------NLDRYLGIIE 267

Query: 454 PGEPPPTLFEYIPEDSLLFVDE 475
             E P  L  YI EDS++ +DE
Sbjct: 268 --EYPSNLINYINEDSIIVIDE 287


>gi|78224730|ref|YP_386477.1| transcription-repair coupling factor [Geobacter metallireducens
           GS-15]
 gi|78195985|gb|ABB33752.1| transcription-repair coupling factor [Geobacter metallireducens
           GS-15]
          Length = 1158

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 102/231 (44%), Gaps = 18/231 (7%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF--PHNAVEYFVSYYD 230
           L G+ GS   + +A++++  +RP +V+AP+   AA++ +E + F   P + + +      
Sbjct: 25  LTGLKGSAPAYLLAQLLKTAERPLLVIAPDADRAAEICTELRFFSGRPFDVLSF------ 78

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  D    ++ S +  +   R +  R L++R    VV++   +   +     
Sbjct: 79  --------PAWDVAPFEKGSPHADVTGQRLACLRRLMDRKTAAVVTTPDALRQRVLPRTM 130

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
                +    G+   + E L+ LV   Y    +   RGTF V G  ++IFP   E    R
Sbjct: 131 LDNASLYFLPGEESNRDEFLAKLVTLGYLNVPLVEDRGTFAVRGGIVDIFPPGFEQPV-R 189

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
           +  FG+ +E I  F PL+ + +  +E + +  +   V     L +A  +IK
Sbjct: 190 IEFFGDFVETIRAFDPLSQRSLAPLEELLLLPSREMVLTDEVLKSASHHIK 240


>gi|303230285|ref|ZP_07317052.1| transcription-repair coupling factor [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515068|gb|EFL57043.1| transcription-repair coupling factor [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 1096

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 121/265 (45%), Gaps = 43/265 (16%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS- 211
           Q  ++   LK    + K  ++ G++GS K+F +++ I   Q  +I++  +     +L+  
Sbjct: 11  QNPSMTDGLKAFRQKGK-SVIYGLSGSQKSFLLSRAIPEEQVQSIIIVVHDKEHKELWER 69

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD--TYIEKESSINEQIDRMRHSATRSLLER 269
           +F  F+P+  V  F             P T+   +     S+  Q  +MR     S+L  
Sbjct: 70  DFSFFWPNVQVLPF-------------PITERVEFTTVARSLEGQGAQMR---ALSMLAW 113

Query: 270 NDCIVVSSVSCIYGIGSVESYSQMIV----------QLKIGDSVEQKELLSSLVKQQYKR 319
           N  +VV        + ++E  +Q +V           L++  S+E+ ELL  LVK  Y+R
Sbjct: 114 NRPVVV--------LATIEEATQYVVSPQYVISQSVHLEVSQSIERDELLEKLVKIGYER 165

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RG F V GD  +IFP + +D   R+  FG++I+ +  F   T    R++ET+  
Sbjct: 166 VDQVEQRGHFSVRGDIFDIFPVNSDDPI-RMEFFGDEIDTMRHFSVDTQ---RSIETVDA 221

Query: 380 Y-ANSHYVTPRPTLNTAMKYIKEEL 403
           Y     ++T     +T + Y K+ L
Sbjct: 222 YTVTPFFLTSDDADSTLLSYAKDGL 246



 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           ++R    H ++   +  EI+ D   G +DVL+  +++  GLDIP    + I DAD+ G 
Sbjct: 783 DLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGL 841


>gi|300768957|ref|ZP_07078848.1| transcription-repair coupling factor [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|300493478|gb|EFK28655.1| transcription-repair coupling factor [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 1175

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/318 (20%), Positives = 133/318 (41%), Gaps = 27/318 (8%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           +L GI  R + QL+ G+ GS +T  ++ +   +    +++  N   A+QL  +  +    
Sbjct: 16  ILAGISPRSR-QLITGLNGSARTVYLSALFHQLTHSLLIVTDNGFHASQLVDDLTSLLDE 74

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           + V  F             P  +    + ++ + +    R  A  +LL  +  ++V+SV+
Sbjct: 75  DQVFLF-------------PAEEMIATEVATSSPESRAQRVQALNALLRDSPAVIVTSVA 121

Query: 280 CIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
                +  V  +    + + +G  ++ ++L   L    Y ++ +    G F V G  ++I
Sbjct: 122 GARRFLPPVAQFQAATLPVAVGQDIDLEDLQRQLHDMGYVKEKLVARPGDFAVRGSIVDI 181

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM-K 397
           +P    D   R+  F  +++ +  F P T + + N++   I   + ++     L TAM +
Sbjct: 182 YPLD-ADYPLRLDFFDTEVDTLKYFDPGTQRSVENLDEYTILPATDFI-----LTTAMLQ 235

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
              + LK  +    K+ +  E Q L   +   L  +E       +  Y  YL  R     
Sbjct: 236 AGAQRLKTAIAAESKKLKPAERQTLADNLAQPLADMEKGIIGNDLLLYGDYLYDRK---- 291

Query: 458 PPTLFEYIPEDSLLFVDE 475
             ++F+Y+  D L+  +E
Sbjct: 292 -TSIFDYVAADGLVIFEE 308


>gi|317120949|ref|YP_004100952.1| transcription-repair coupling factor [Thermaerobacter marianensis
           DSM 12885]
 gi|315590929|gb|ADU50225.1| transcription-repair coupling factor [Thermaerobacter marianensis
           DSM 12885]
          Length = 1219

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 97/205 (47%), Gaps = 9/205 (4%)

Query: 267 LERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           + +  C+VV+ V  +   +   E ++  ++ L+ G  +++ ELL+ LV   Y+R +    
Sbjct: 119 IRQGPCLVVAPVGAVARRLPRPERWAAGLIDLEPGRVLDRDELLARLVAAGYQRAEQVDR 178

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
            G   V G  ++++P   E V  R+  FG++I+ +  F P + +    +  +++      
Sbjct: 179 PGEVAVRGGIVDVYPPAGEPV--RIEFFGDEIDSLRRFDPGSQRSTETLARVRLVPAREL 236

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
           V   P     ++ +  E++ RL E  ++ R   A++L +R+  DL  LE     + ++  
Sbjct: 237 VLDGPAWQQGLRALAGEIE-RLREQTRQRRGGAARQLLERLEQDLARLEAE---RPLDLA 292

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSL 470
            RYL    P     TL +Y P  +L
Sbjct: 293 ERYLPFFEPAM--ATLLDYAPGPAL 315



 Score = 37.4 bits (85), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R    H ++   E   ++ D   GK DVLV   ++  GLD+P    + + DAD+ G    
Sbjct: 875 RFAVAHGQMGEGELERVMVDFMAGKADVLVCTTIIESGLDMPNVNTLIVEDADRFGL--- 931

Query: 668 KTSLIQTIGRAARN 681
              L Q  GR  R+
Sbjct: 932 -AQLYQLRGRVGRS 944


>gi|332665410|ref|YP_004448198.1| transcription-repair coupling factor [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332334224|gb|AEE51325.1| transcription-repair coupling factor [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 1141

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 113/243 (46%), Gaps = 28/243 (11%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPA--IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           LL + G+  +F +A V    Q PA  +++A NK  AA   ++    F    V +F     
Sbjct: 53  LLELVGAQLSFVIAGVYH--QHPANHLIVADNKEEAAYWQNDLAALFGQKRVHFFPD--S 108

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
           + QP  +     T + + +   E I+ + ++A      R   IV    +    + S E  
Sbjct: 109 FKQPLRFDELNQTNVLERT---ETINAVSNAA------RGQVIVTYPEALFERVVSPEVL 159

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           S+  +++ +G+ ++ + L+  L++ ++ R++     G F + G  I+IF S   D+ +RV
Sbjct: 160 SKSRIEIAVGEKLDPEFLMDVLIEYKFTREEFVFEPGQFSLRGGIIDIF-SFGNDLPYRV 218

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F +++E I  F PLT    +N+  + I          P +NT     K+E K+ L  +
Sbjct: 219 ELFDDEVESIRTFNPLTQLSAQNISRVSIV---------PNINTRF---KQEDKVSLFRV 266

Query: 411 EKE 413
            KE
Sbjct: 267 LKE 269


>gi|254555607|ref|YP_003062024.1| transcription-repair coupling factor [Lactobacillus plantarum JDM1]
 gi|254044534|gb|ACT61327.1| transcription-repair coupling factor [Lactobacillus plantarum JDM1]
          Length = 1175

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/317 (19%), Positives = 129/317 (40%), Gaps = 25/317 (7%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           +L GI  R + QL+ G+ GS +T  ++ +   +    +++  N   A+QL  +  +    
Sbjct: 16  ILAGISPRSR-QLITGLNGSARTVYLSALFHQLTHSLLIVTDNGFHASQLVDDLTSLLDE 74

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           + V  F             P  +    + ++ + +    R  A  +LL  +  +VV+SV+
Sbjct: 75  DQVFLF-------------PAEEMITTEVATSSPESRAQRVQALNALLRDSPAVVVTSVA 121

Query: 280 CIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
                +  V  +    + + +G  ++ ++L   L    Y ++ +    G F V G  ++I
Sbjct: 122 GARRFLPPVAQFQAATLPVAVGQDIDLEDLQRQLHDMGYVKEKLVARPGDFAVRGSIVDI 181

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           +P    D   R+  F  +++ +  F P T + + N++   I   + ++     L      
Sbjct: 182 YPLD-ADYPLRLDFFDTEVDTLKYFDPETQRSVENLDEYTILPATDFILTSAMLQAG--- 237

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
             + LK  +    K+ +  E Q L   +   L  +E       +  Y  YL  R      
Sbjct: 238 -AQRLKTAIAAESKKLKPAERQTLADNLAQPLADMEKGIIGNDLLLYGDYLYDRK----- 291

Query: 459 PTLFEYIPEDSLLFVDE 475
            ++F+Y+  D L+  +E
Sbjct: 292 TSIFDYVAADGLVIFEE 308


>gi|229159227|ref|ZP_04287252.1| Transcription-repair-coupling factor [Bacillus cereus R309803]
 gi|228624242|gb|EEK81043.1| Transcription-repair-coupling factor [Bacillus cereus R309803]
          Length = 1176

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/320 (20%), Positives = 147/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  +R  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKRSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEVGVASPELKAQRIEVLNRLAAGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+I+    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESIRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K+++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PED ++ +DE
Sbjct: 292 KEPTSLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|28377424|ref|NP_784316.1| transcription-repair coupling factor [Lactobacillus plantarum
           WCFS1]
 gi|28270256|emb|CAD63157.1| transcription-repair coupling factor [Lactobacillus plantarum
           WCFS1]
          Length = 1175

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/317 (19%), Positives = 129/317 (40%), Gaps = 25/317 (7%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           +L GI  R + QL+ G+ GS +T  ++ +   +    +++  N   A+QL  +  +    
Sbjct: 16  ILAGISPRSR-QLITGLNGSARTVYLSALFHQLTHSLLIVTDNGFHASQLVDDLTSLLDE 74

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           + V  F             P  +    + ++ + +    R  A  +LL  +  +VV+SV+
Sbjct: 75  DQVFLF-------------PAEEMIATEVATSSPESRAQRVQALNALLRDSPAVVVTSVA 121

Query: 280 CIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
                +  V  +    + + +G  ++ ++L   L    Y ++ +    G F V G  ++I
Sbjct: 122 GARRFLPPVAQFQAATLPVAVGQDIDLEDLQRQLHDMGYVKEKLVARPGDFAVRGSIVDI 181

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           +P    D   R+  F  +++ +  F P T + + N++   I   + ++     L      
Sbjct: 182 YPLD-ADYPLRLDFFDTEVDTLKYFDPETQRSVENLDEYTILPATDFILTSAMLQAG--- 237

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
             + LK  +    K+ +  E Q L   +   L  +E       +  Y  YL  R      
Sbjct: 238 -AQRLKTAIAAENKKLKPAERQTLADNLAQPLADMEKGIIGNDLLLYGDYLYDRK----- 291

Query: 459 PTLFEYIPEDSLLFVDE 475
            ++F+Y+  D L+  +E
Sbjct: 292 TSIFDYVAADGLVIFEE 308


>gi|295396690|ref|ZP_06806836.1| transcription-repair coupling factor [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294970436|gb|EFG46365.1| transcription-repair coupling factor [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 1202

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 78/174 (44%), Gaps = 21/174 (12%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P + +      A +L     +     +V +F S+ +    E   PR+DT  ++ S +   
Sbjct: 50  PVVAVTSTGREAEELTEALADHLGPTSVVFFPSW-ETLPHERLSPRSDTVGKRLSVLRA- 107

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELL 309
              + H   R L      +VV++V  +      G+G +E      V LK+GD  +  EL 
Sbjct: 108 ---LSHPGERPL-----SVVVTTVRALLQPIVKGLGDLEP-----VTLKVGDEHDLTELA 154

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
             L    Y R D+   RG F V G  I+IFP   ED A RV  FG+++EEI  F
Sbjct: 155 EHLSHLAYSRVDMVSRRGEFAVRGGIIDIFPP-TEDSALRVEFFGDEVEEIRRF 207


>gi|308179637|ref|YP_003923765.1| transcription-repair coupling factor [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|308045128|gb|ADN97671.1| transcription-repair coupling factor [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 1175

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/317 (19%), Positives = 129/317 (40%), Gaps = 25/317 (7%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           +L GI  R + QL+ G+ GS +T  ++ +   +    +++  N   A+QL  +  +    
Sbjct: 16  ILAGISPRSR-QLITGLNGSARTVYLSALFHQLTHSLLIVTDNGFHASQLVDDLTSLLDE 74

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           + V  F             P  +    + ++ + +    R  A  +LL  +  +VV+SV+
Sbjct: 75  DQVFLF-------------PAEEMIATEVATSSPESRAQRVQALNALLRDSPAVVVTSVA 121

Query: 280 CIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
                +  V  +    + + +G  ++ ++L   L    Y ++ +    G F V G  ++I
Sbjct: 122 GARRFLPPVAQFQAATLPVAVGQDIDLEDLQRQLHDMGYVKEKLVARPGDFAVRGSIVDI 181

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           +P    D   R+  F  +++ +  F P T + + N++   I   + ++     L      
Sbjct: 182 YPLD-ADYPLRLDFFDTEVDTLKYFDPETQRSVENLDEYTILPATDFILTSAMLQAG--- 237

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
             + LK  +    K+ +  E Q L   +   L  +E       +  Y  YL  R      
Sbjct: 238 -AQRLKTAIAAENKKLKPAERQTLADNLAQPLADMEKGIIGNDLLLYGDYLYDRK----- 291

Query: 459 PTLFEYIPEDSLLFVDE 475
            ++F+Y+  D L+  +E
Sbjct: 292 TSIFDYVAADGLVIFEE 308


>gi|56961865|ref|YP_173587.1| transcription-repair coupling factor [Bacillus clausii KSM-K16]
 gi|56908099|dbj|BAD62626.1| transcription-repair coupling factor [Bacillus clausii KSM-K16]
          Length = 1180

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 142/319 (44%), Gaps = 30/319 (9%)

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
           KGI +    QLL G+TGS +T   A +     R  +V+  N   A ++Y +       + 
Sbjct: 19  KGIENDMNEQLLTGLTGSARTVVSAALFRETGRSQLVVTHNLYQAQKIYEDLVELLDEDT 78

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSI-NEQIDRMRHSATRSLLERNDCIVVSSVSC 280
           V              Y+   +  I  E ++ + ++   R     +L++    IVV+ ++ 
Sbjct: 79  V--------------YLYPVNELISAEIAVASPEMKAQRLDLLNALVQDFKGIVVAPLAG 124

Query: 281 IYGIGSVESYSQMI-VQLKIGDSV-EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           I  +   ++  Q   + LK G+ + + +E + + V   Y+R D+    G F V G  +++
Sbjct: 125 IRRLLPPKALWQSSQLHLKTGEDIGDLEEFIKNFVTMGYRRSDMVSAPGEFSVRGGIVDL 184

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           +P   E    R+ +F  +++ +  F   T +    ++ + I      +      +   K 
Sbjct: 185 YPLTKEH-PLRIELFDTEVDSMRYFSLETQRSEGMIDEVTIGPAQEVLLHHSHYSHGAKL 243

Query: 399 IKEELKMRLIEL-EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY-SRYLTGRNPGE 456
           ++E+ +  L ++  K+ R     +L++ I +++  L+ + + + +  Y S Y       E
Sbjct: 244 LEEKYEATLKKVASKQTR----DKLQEHIPFEIAQLKQSATFEGMYKYMSLYY------E 293

Query: 457 PPPTLFEYIPEDSLLFVDE 475
            P +L  Y+PED+ ++VDE
Sbjct: 294 TPQSLLSYMPEDAFVWVDE 312



 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +RM E ++  +   + RV Y H ++   E   II D   G+ DVLV   ++  G+DIP  
Sbjct: 847 ERMTEQISTLV--PDARVSYAHGQMNERELESIILDFLEGESDVLVTTTIIETGVDIPNV 904

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + + +ADK G     + L Q  GR  R+
Sbjct: 905 NTLIVCNADKMGL----SQLYQIRGRVGRS 930


>gi|229825975|ref|ZP_04452044.1| hypothetical protein GCWU000182_01339 [Abiotrophia defectiva ATCC
           49176]
 gi|229789717|gb|EEP25831.1| hypothetical protein GCWU000182_01339 [Abiotrophia defectiva ATCC
           49176]
          Length = 1184

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 6/184 (3%)

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           + IV+L + DS +  EL   L +  Y++      +G F V GD  +IFP   E+  +R+ 
Sbjct: 136 EKIVKLSVRDSFDITELARRLSELGYEKTSQVSGKGQFAVRGDIFDIFP-LTEETPFRLE 194

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            +G++I+ I  F   + + I NVE + +Y  +  +         +K + +E +    +  
Sbjct: 195 FWGDEIDTIRAFDVESQRSIENVEELLVYPATEIIIDEERKLAGLKKLNKEKEEVYKKFR 254

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
            E +  EA R+   +    + LE  G    I++Y  Y       +   T F+Y  E+ + 
Sbjct: 255 AEMKTEEAARINSVVEEFKDNLEIYGGSFGIDSYINYFF-----DETETFFDYFNEEDIF 309

Query: 472 FVDE 475
           F+DE
Sbjct: 310 FIDE 313



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 608 RVRYMHSEV--KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           RV + H ++  + LERI I  +   G+ DVLV   ++  GLDI     + I DADK G  
Sbjct: 865 RVSFAHGQMNERELERIMI--EFINGEIDVLVSTTIIETGLDISNVNTIIIDDADKMGL- 921

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 922 ---SQLYQLRGRVGRS 934


>gi|307324345|ref|ZP_07603553.1| transcription-repair coupling factor [Streptomyces violaceusniger
           Tu 4113]
 gi|306890076|gb|EFN21054.1| transcription-repair coupling factor [Streptomyces violaceusniger
           Tu 4113]
          Length = 1236

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 105/238 (44%), Gaps = 22/238 (9%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           A+A+ ++G     + Q+ L    + + F +A +  +  RP + +      A  L +  ++
Sbjct: 67  ALAEAVRGAADGHRPQVDLVGPPAARPFAIAALARSAGRPVLAVTATGREAEDLAAALRS 126

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
             P + V  + S+ +    E   PR+DT   + + +     R+ H            +VV
Sbjct: 127 LLPPDTVVEYPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPRQDDPAAGPVSVVV 181

Query: 276 SSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
           + V  +      G+G +E      V L+ G + + +E++  L    Y R ++   RG F 
Sbjct: 182 APVRSVLQPQVKGLGDLEP-----VSLRAGGTADLEEIVDGLAAAAYSRVELVEKRGEFA 236

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           V G  +++FP   E+   R+  +G+DIEEI  F      K+ +  ++++  +  +  P
Sbjct: 237 VRGGILDVFPP-TEEHPLRIEFWGDDIEEIRYF------KVADQRSLEVAEHGLWAPP 287


>gi|15671995|ref|NP_266169.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12722849|gb|AAK04111.1|AE006240_9 transcription-repair coupling factor [Lactococcus lactis subsp.
           lactis Il1403]
          Length = 1161

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 111/254 (43%), Gaps = 21/254 (8%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   + +  +G   RE+  LL G++G+ K+  MA   E +    I++  ++  A +LY 
Sbjct: 8   DQNWQLQKWQQGFSKRERT-LLTGLSGTAKSLVMANAYENVADKYIIVTDSQFHANELYD 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM--RHSATRSLLER 269
           E         V  F S  + Y   A   +               DR+  R  A   LL+ 
Sbjct: 67  ELSTLLGEEKVFQFFSDDNIYAEFALASK---------------DRVAYRLEALNFLLDE 111

Query: 270 NDC--IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
                +VV  ++    + S E++ +  + L  GD  +   L++ L K  Y++    +  G
Sbjct: 112 KSTGFLVVPFLALRSYLPSPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVMTPG 171

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            F + GD ++I+P   E+   R+  FG++++ I  F   + + + ++E ++IY  S ++ 
Sbjct: 172 EFSMRGDIVDIYPLDAENPV-RLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFIL 230

Query: 388 PRPTLNTAMKYIKE 401
                +   K + E
Sbjct: 231 TDKEFDKGAKSLTE 244


>gi|298244980|ref|ZP_06968786.1| transcription-repair coupling factor [Ktedonobacter racemifer DSM
           44963]
 gi|297552461|gb|EFH86326.1| transcription-repair coupling factor [Ktedonobacter racemifer DSM
           44963]
          Length = 1169

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 138/327 (42%), Gaps = 52/327 (15%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +LL+ I   E V LL G+T + + + +A +  A+++P +++  ++  A QL    K F  
Sbjct: 18  RLLEQIRQPEGVPLLTGITEAARPYVIAALSVALKQPLLIVVQDENQATQLAETLKQFLT 77

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
           + +  + +   D    E  +   +T   +  +    ++R          ER   +V S+ 
Sbjct: 78  NPSDVFCLPDRDAMPFERLIGDAETTQHRLQTFIALVER----------ERTPIVVCSAR 127

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI-------IRGTFRV 331
           +    +   +  +  + QL+ G  ++    L+S+++Q Y   D+G          G F  
Sbjct: 128 ALTQPVIPPQELATALFQLREGQEID----LTSMLEQLY---DLGYEPVAEVEQPGQFSH 180

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I++FP  L     R+  FG++IE I  F   T + +                  P 
Sbjct: 181 RGGIIDLFPPTLPRPV-RIEFFGDEIESIRTFDQATQRSL-----------------NPI 222

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRL----EQRITYDLEMLETTGSCQSIENYSR 447
            +  +   +E L +R  +  +E   L+++ L    E+R   DL++L+   S   I  Y  
Sbjct: 223 QDCVVGPAREALPVRGPQAAQELATLDSKILHRDAEERWNNDLDVLKQRRSFDDIAFYLP 282

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           YL        P T+ +Y+P   LL +D
Sbjct: 283 YL------HQPATVLDYLPRTGLLILD 303


>gi|255027042|ref|ZP_05299028.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J2-003]
          Length = 499

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 141/320 (44%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +    
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDD---- 69

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                    +S  D  +   Y P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 70  --------LLSLMDVDRLFLY-PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    + +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++ + L EL+++    + Q L + +  DLEML    S    + + +Y+    P 
Sbjct: 240 VKRLEKKMMLTLNELKEQE---DKQALIENLEEDLEMLR---SGVKPDMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +LF+Y+P+++ + +DE
Sbjct: 294 --PASLFDYLPKNTAILLDE 311


>gi|229074115|ref|ZP_04207162.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-18]
 gi|229094775|ref|ZP_04225781.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-29]
 gi|229113728|ref|ZP_04243164.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-3]
 gi|228669725|gb|EEL25131.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-3]
 gi|228688643|gb|EEL42515.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-29]
 gi|228709009|gb|EEL61135.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-18]
          Length = 1176

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 62/320 (19%), Positives = 148/320 (46%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + ++V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGVIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  ++ + LL +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPIKELWKQKQIEINLGQEIDLEALLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E++K    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVKFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K+++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTAVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PED ++ +DE
Sbjct: 292 KEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|258544391|ref|ZP_05704625.1| ATP-dependent RNA helicase RhlE [Cardiobacterium hominis ATCC
           15826]
 gi|258520350|gb|EEV89209.1| ATP-dependent RNA helicase RhlE [Cardiobacterium hominis ATCC
           15826]
          Length = 296

 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 7/138 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   TKR +E++ + L +   R RY+H ++  ++R  I+ DLR GK D+LV  ++   G
Sbjct: 108 IIFAATKRASEEIADSLRDNGFRARYLHGDLPQVKRNRIVEDLRKGKCDILVATDVAARG 167

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +D+P    V   D       R     +  IGR+ R   +   +   ++    QL+    T
Sbjct: 168 IDVPAISHVINYD-----LPRQVEDYVHRIGRSGRAGRTGTAINLCSLADRSQLSA--IT 220

Query: 706 RRREKQLEHNKKHNINPQ 723
           R  E+++E ++   + P+
Sbjct: 221 RYLERKIEEHRIAGLEPK 238


>gi|257877903|ref|ZP_05657556.1| transcription-repair coupling factor [Enterococcus casseliflavus
           EC20]
 gi|257812069|gb|EEV40889.1| transcription-repair coupling factor [Enterococcus casseliflavus
           EC20]
          Length = 1172

 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 108/253 (42%), Gaps = 19/253 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +A    G+  +   QLL G+ GS KT  +  V +A Q+  IV+ PN     QL  + +N 
Sbjct: 13  VAAWHTGLREQAPRQLLTGLAGSAKTLAITGVYQAFQKQVIVVTPNLYYTNQLAEDLRNV 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR-MRHSATRSLLERNDCIVV 275
                             + YV   D  +  E + +    R  R +A  ++ +    I V
Sbjct: 73  ----------------TEDVYVFPVDEVLSAEMAFSSPEAREERVAALNAVSQGKTGIYV 116

Query: 276 SSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
             V+ +   +   +++     Q +IGD ++ + L   L+   Y+RQ +    G F + G 
Sbjct: 117 LPVAALRKYLPEKKTWLANQFQWQIGDEIDLERLPQQLILMGYERQSMIGKPGEFSIRGS 176

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++I+P + E    R+ +F  +I+ +  F   T + +  ++ + I   +  V     L +
Sbjct: 177 ILDIYPLNAE-YPVRIELFDVEIDSMRSFNVETQRSVETLQQVAILPTTELVFSAEDLAS 235

Query: 395 AMKYIKEELKMRL 407
             K ++E L  RL
Sbjct: 236 GQKQLQELLNKRL 248



 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++DVLV   ++  G+DIP    + + +AD  G  
Sbjct: 854 DARIAYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGL- 912

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 913 ---STLYQLRGRVGRS 925


>gi|254832465|ref|ZP_05237120.1| transcription-repair coupling factor [Listeria monocytogenes
           10403S]
          Length = 1179

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 140/320 (43%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V+    Y          P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    V +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNVSIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++ + L EL+++    + Q L + +  DLEML    S    + + +Y+    P 
Sbjct: 240 VKRLEKKMMLTLNELKEQE---DKQALIENLEEDLEMLR---SGVKPDMFFKYIGLAYP- 292

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +LF+Y+P+++ + +DE
Sbjct: 293 -DPASLFDYLPKNTAILLDE 311



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H ++   E   +I     G+FDVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 859 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917

Query: 666 RSKTSLIQTIGRAAR 680
              + L Q  GR  R
Sbjct: 918 ---SQLYQLRGRVGR 929


>gi|309809624|ref|ZP_07703481.1| transcription-repair coupling factor [Lactobacillus iners SPIN
           2503V10-D]
 gi|308170105|gb|EFO72141.1| transcription-repair coupling factor [Lactobacillus iners SPIN
           2503V10-D]
          Length = 1110

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 97/212 (45%), Gaps = 17/212 (8%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F        P   +  T   +     +++++D M       LL +   
Sbjct: 68  LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            GD ++I+P ++    +R+  F ++I+ I  F
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTF 205


>gi|315644370|ref|ZP_07897510.1| transcription-repair coupling factor [Paenibacillus vortex V453]
 gi|315280247|gb|EFU43539.1| transcription-repair coupling factor [Paenibacillus vortex V453]
          Length = 1175

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           G+++  + QL+ G++GS +   MA + +  QRP +V+  N   A ++  + +     + V
Sbjct: 21  GVNAGMREQLISGLSGSSRQILMAALHQDQQRPLLVVTHNMFSAQKIADDLQEALSSDQV 80

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
             +        P   +   ++ +    ++ ++ID +   A R        IVV+  S + 
Sbjct: 81  LLY--------PANELVAAESAVSSPETLAQRIDVLVRCA-RGF----RGIVVAPFSGVR 127

Query: 283 G-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             + + E  S   + L  G ++     L+ +V+  Y+R +    RG   V G  I+ +P 
Sbjct: 128 RLLPAPEVMSDARIVLHDGGTLVLDSFLNRMVEMGYERVERVESRGEMSVRGGIIDFYP- 186

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               +A+R+ +F  DI+ I  F P+  + I  V  + I      +     L+     +  
Sbjct: 187 MTTTMAYRIELFDEDIDSIRTFDPIDQRSIDKVREVVITPCKEIIADSERLSRTADTV-- 244

Query: 402 ELKMRLIELEKEGRLLEAQ---RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
              +RL+E + E R+ + Q   RL   I  ++EML        +  Y   L       P 
Sbjct: 245 ---VRLLEAQLE-RMSDRQAKLRLRDEIHREVEMLRERIYFPELYKYISLLY------PE 294

Query: 459 PT-LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505
            T L++Y+P+D++L +DE    +     + R +      L + G  LP
Sbjct: 295 KTNLYDYMPKDTILIMDEPARLLETAKQLERDEAEWNLHLMQNGKSLP 342



 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H ++   E  + I D   G++DVLV  +++  G+DIP    + + DADK G    
Sbjct: 849 RVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGL--- 905

Query: 668 KTSLIQTIGRAARNVNSKVILYA 690
            + L Q  GR  R   S  I YA
Sbjct: 906 -SQLYQLRGRVGR---SNRIAYA 924


>gi|259501958|ref|ZP_05744860.1| transcription-repair coupling factor [Lactobacillus antri DSM
           16041]
 gi|259170135|gb|EEW54630.1| transcription-repair coupling factor [Lactobacillus antri DSM
           16041]
          Length = 1185

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 135/309 (43%), Gaps = 27/309 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS +T  +A ++E  Q+P + +  +     +L  +  N  P + V      Y 
Sbjct: 33  QLVTGISGSARTLLLAGLVEQSQQPVLAVVDSLSQVEELADDLANLLPPDRV------YQ 86

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVES 289
           +   E       T     SS N ++ R++  A  +L  +   +VV+SV+ +   + + E 
Sbjct: 87  FPVEEVLAAEVAT-----SSPNYRLQRVQ--ALDALDSQRPAVVVTSVAGLRRNVFAPEF 139

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           ++Q  +++ +G  ++ +     L    Y+ Q + +  G F + G  I+++  +  D   R
Sbjct: 140 FAQATLKVAVGGELDPERARQQLSAMGYQLQKMVLRPGDFAIRGSIIDVYALN-TDNPVR 198

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           + +F  +++ +  F   T + + N E ++I   +  + P    +     +K++      E
Sbjct: 199 IDLFDTEVDSLRYFDASTQKSVGNAEEVEILPATDLILPPAEFSRVQAAVKQQFDQLKAE 258

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT---LFEYIP 466
           L+ +G     Q++  R T  L  L+       +  +   +         PT   L +Y+ 
Sbjct: 259 LQ-DGDADILQQVNNRFTPLLTALQERRLPNEMLEFGDLVY--------PTRHSLLDYLA 309

Query: 467 EDSLLFVDE 475
            D  L++D+
Sbjct: 310 ADGALYLDD 318



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y+H ++   E   ++ D   G +DVLV  +++  G+DIP    + + +AD  G  
Sbjct: 864 DARIGYIHGKMGENELETVLYDFIQGNYDVLVTTSIIETGVDIPNVNTLFVENADHLGL- 922

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R+
Sbjct: 923 ---AQLYQIRGRIGRS 935


>gi|325568171|ref|ZP_08144612.1| transcription-repair coupling factor [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158372|gb|EGC70523.1| transcription-repair coupling factor [Enterococcus casseliflavus
           ATCC 12755]
          Length = 1172

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 107/253 (42%), Gaps = 19/253 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +A    G+  +   QLL G+ GS KT  +  V +A Q+  IV+ PN     QL  + +N 
Sbjct: 13  VAAWHAGLREQAPRQLLTGLAGSAKTLAITGVYQAFQKQVIVVTPNLYYTNQLAEDLRNV 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR-MRHSATRSLLERNDCIVV 275
                             + YV   D  +  E + +    R  R +A  ++ +    I V
Sbjct: 73  ----------------TDDVYVFPVDEVLSAEMAFSSPEAREERVAALNAVSQGKTGIYV 116

Query: 276 SSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
             V+ +   +   +++     Q +IGD ++ + L   L+   Y+RQ +    G F + G 
Sbjct: 117 LPVAALRKYLPEKKTWLANQFQWQIGDEIDLERLPQQLILMGYERQSMIGKPGEFSIRGS 176

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++I+P + E    R+ +F  +I+ +  F   T + +  ++ + I   +  V     L  
Sbjct: 177 ILDIYPLNAE-YPVRIELFDVEIDSMRSFNVETQRSVETLQQVAILPTTELVFSAEDLAA 235

Query: 395 AMKYIKEELKMRL 407
             K ++E L  RL
Sbjct: 236 GQKQLQELLNKRL 248



 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++DVLV   ++  G+DIP    + + +AD  G  
Sbjct: 854 DARIAYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGL- 912

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 913 ---STLYQLRGRVGRS 925


>gi|81429216|ref|YP_396217.1| transcription-repair coupling factor [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610859|emb|CAI55911.1| Transcription-repair coupling factor (TRCF) [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 1173

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 15/210 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QLL G++GS KT  +A + +  ++P +++  N   A Q+  +  N    + +  F     
Sbjct: 26  QLLTGLSGSAKTLFLATIYKQQRQPLLIIESNMFQANQVAEDLANQLNGDQIYTF----- 80

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
              P   V   +  +    S  E++  +   AT         IVV+SV+ +   + +   
Sbjct: 81  ---PVEEVMAAEIAVSSPESRAERVRTLSFLAT-----GKKGIVVTSVAGMRRLLPTARQ 132

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +     Q+++G  V+ K L + L +  Y R  +    G F + GD I+IFP   E+   R
Sbjct: 133 WRDSQTQIEMGSEVDPKILGAQLAEMGYHRDKLVGKPGEFAMRGDIIDIFPLDTENPV-R 191

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           + +F  +++ I  F   T + I N+E++ I
Sbjct: 192 IELFDTEVDAIRSFEADTQRSIENLESVAI 221



 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y H ++   +   +I D   GK+DVLV   ++  G+D+P    + + DAD  G     
Sbjct: 858 VGYAHGQMTEAQLEGVIYDFVQGKYDVLVTTTIIETGVDMPNVNTMIVEDADHYGL---- 913

Query: 669 TSLIQTIGRAARN 681
           + L Q  GR  R+
Sbjct: 914 SQLYQLRGRIGRS 926


>gi|259500996|ref|ZP_05743898.1| transcription-repair-coupling factor [Lactobacillus iners DSM
           13335]
 gi|302190555|ref|ZP_07266809.1| transcription-repair coupling factor [Lactobacillus iners AB-1]
 gi|259167690|gb|EEW52185.1| transcription-repair-coupling factor [Lactobacillus iners DSM
           13335]
          Length = 1110

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 97/212 (45%), Gaps = 17/212 (8%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F        P   +  T   +     +++++D M       LL +   
Sbjct: 68  LVELFEENMVHFF--------PVEPLLETQAAVSSLDELSQRLDAMSF-----LLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            GD ++I+P ++    +R+  F ++I+ I  F
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTF 205


>gi|257868298|ref|ZP_05647951.1| transcription-repair coupling factor [Enterococcus casseliflavus
           EC30]
 gi|257874429|ref|ZP_05654082.1| transcription-repair coupling factor [Enterococcus casseliflavus
           EC10]
 gi|257802412|gb|EEV31284.1| transcription-repair coupling factor [Enterococcus casseliflavus
           EC30]
 gi|257808593|gb|EEV37415.1| transcription-repair coupling factor [Enterococcus casseliflavus
           EC10]
          Length = 1172

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 107/253 (42%), Gaps = 19/253 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +A    G+  +   QLL G+ GS KT  +  V +A Q+  IV+ PN     QL  + +N 
Sbjct: 13  VAAWHTGLREQAPRQLLTGLAGSAKTLAITGVYQAFQKQVIVVTPNLYYTNQLAEDLRNV 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR-MRHSATRSLLERNDCIVV 275
                             + YV   D  +  E + +    R  R +A  ++ +    I V
Sbjct: 73  ----------------TEDVYVFPVDEVLSAEMAFSSPEAREERVAALNAVSQGKTGIYV 116

Query: 276 SSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
             V+ +   +   +++     Q +IGD ++ + L   L+   Y+RQ +    G F + G 
Sbjct: 117 LPVAALRKYLPEKKTWLANQFQWQIGDEIDLERLPQQLILMGYERQSMIGKPGEFSIRGS 176

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++I+P + E    R+ +F  +I+ +  F   T + +  ++ + I   +  V     L  
Sbjct: 177 ILDIYPLNAE-YPVRIELFDVEIDSMRSFNVETQRSVETLQQVAILPTTELVFSAEDLAA 235

Query: 395 AMKYIKEELKMRL 407
             K ++E L  RL
Sbjct: 236 GQKQLQELLNKRL 248



 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++DVLV   ++  G+DIP    + + +AD  G  
Sbjct: 854 DARIAYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGL- 912

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 913 ---STLYQLRGRVGRS 925


>gi|326405611|gb|ADZ62682.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           lactis CV56]
          Length = 1161

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 111/254 (43%), Gaps = 21/254 (8%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   + +  +G   RE+  LL G++G+ K+  MA   E +    I++  ++  A +LY 
Sbjct: 8   DQNWQLQKWQQGFSKRERT-LLTGLSGTAKSLVMANAYENVADKYIIVTDSQFHANELYD 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM--RHSATRSLLER 269
           E         V  F S  + Y   A   +               DR+  R  A   LL+ 
Sbjct: 67  ELSTLLGEEKVFQFFSDDNIYAEFALASK---------------DRVAYRLEALNFLLDE 111

Query: 270 NDC--IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
                +V+  ++    + S E++ +  + L  GD  +   L++ L K  Y++    +  G
Sbjct: 112 KSTGFLVIPFLALRSYLPSPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVMTPG 171

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            F + GD ++I+P   E+   R+  FG++++ I  F   + + + ++E ++IY  S ++ 
Sbjct: 172 EFSMRGDIVDIYPLDAENPV-RLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFIL 230

Query: 388 PRPTLNTAMKYIKE 401
                +   K + E
Sbjct: 231 TDKEFDKGAKSLTE 244


>gi|281490512|ref|YP_003352492.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           lactis KF147]
 gi|281374330|gb|ADA63863.1| Transcription-repair coupling factor [Lactococcus lactis subsp.
           lactis KF147]
          Length = 1161

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 111/254 (43%), Gaps = 21/254 (8%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   + +  +G   RE+  LL G++G+ K+  MA   E +    I++  ++  A +LY 
Sbjct: 8   DQNWQLQKWQQGFSKRERT-LLTGLSGTAKSLVMANAYENVADKYIIVTDSQFHANELYD 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH--SATRSLLER 269
           E         V  F S  + Y   A   +               DR+ +   A   LL+ 
Sbjct: 67  ELSTLLGEEKVFQFFSDDNIYAEFALASK---------------DRVAYLLEALNFLLDE 111

Query: 270 NDC--IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
                +VV  ++    + S E++ +  + L  GD  +   L++ L K  Y++    +  G
Sbjct: 112 KSTGFLVVPFLALRSYLPSPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVMTPG 171

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            F + GD ++I+P   E+   R+  FG++++ I  F   + + + ++E ++IY  S ++ 
Sbjct: 172 EFSMRGDIVDIYPLDAENPV-RLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFIL 230

Query: 388 PRPTLNTAMKYIKE 401
                +   K + E
Sbjct: 231 TDKEFDKGAKSLTE 244


>gi|228898807|ref|ZP_04063090.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
           4222]
 gi|228860832|gb|EEN05209.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
           4222]
          Length = 1176

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E++K    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVKFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +++++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PED ++ +DE
Sbjct: 292 KEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G    
Sbjct: 860 RVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL--- 916

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 917 -SQLYQLRGRVGRS 929


>gi|294496926|ref|YP_003560626.1| transcription-repair coupling factor [Bacillus megaterium QM B1551]
 gi|294346863|gb|ADE67192.1| transcription-repair coupling factor [Bacillus megaterium QM B1551]
          Length = 1176

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 143/323 (44%), Gaps = 27/323 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A ++ L +G+    K QL+ G++GS ++  MA + E  + P +V+  N   A ++Y +  
Sbjct: 16  AVVSSLEEGL----KEQLVTGISGSARSVLMALLNEDKKYPLLVVTHNLYQAQKVYEDLL 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +  P   V  +             P  D    +    + ++   R        +    +V
Sbjct: 72  HLLPEKDVFLY-------------PVNDLVATEVGIASPELKAQRIEVLNYWSQHTGGVV 118

Query: 275 VSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+ ++ I  +   ++ + Q  +  ++G  ++    L  LV+  Y+R  +    G F V G
Sbjct: 119 VTPLAGIRKLLPPKARWEQTQLPFQMGIDIDVDHYLKRLVELGYERASMVSAPGEFSVRG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+I+P   E++  R+ +F  +I+ I  F     +    ++ I I   +  +  R  + 
Sbjct: 179 GIIDIYPL-TEELPVRIELFDTEIDSIRTFTIEDQRSQEQLKEISIGPATEIIVNRNEVA 237

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             ++ ++ +L   L +++     L+A  L + I  ++E L      Q +EN  +YL+   
Sbjct: 238 QGIEELEAQLASTLQQVKNAA--LKA-TLTENIKGEIEQLR---QGQLLENMFKYLSFFY 291

Query: 454 PGEPPPTLFEYIPEDSLLFVDES 476
             E P +L +Y+PE  L+  DE+
Sbjct: 292 --ESPASLLDYLPEGGLVIFDET 312



 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y H ++   E   +I     G++DV+V   ++  G+DIP    + + +ADK G    
Sbjct: 860 RVTYAHGKMNETELEAVILSFLEGEYDVIVSTTIIETGVDIPNVNTLIVNNADKMGL--- 916

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 917 -SQLYQLRGRVGRS 929


>gi|218895189|ref|YP_002443600.1| transcription-repair coupling factor [Bacillus cereus G9842]
 gi|218545395|gb|ACK97789.1| transcription-repair coupling factor [Bacillus cereus G9842]
          Length = 1176

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E++K    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVKFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +++++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PED ++ +DE
Sbjct: 292 KEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G    
Sbjct: 860 RVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL--- 916

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 917 -SQLYQLRGRVGRS 929


>gi|229015456|ref|ZP_04172457.1| Transcription-repair-coupling factor [Bacillus cereus AH1273]
 gi|228745840|gb|EEL95841.1| Transcription-repair-coupling factor [Bacillus cereus AH1273]
          Length = 1176

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/320 (19%), Positives = 146/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E++K    + ++  +  L   
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVKFGPATEFLFSQEELKLG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K+++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PED ++ +DE
Sbjct: 292 KEPASLIDYLPEDGVVILDE 311



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|213426934|ref|ZP_03359684.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 62

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
           R EE+       + VSATPG +E EQ + +I EQIIRPTGL+DP VE+R    Q++D+  
Sbjct: 1   RREEFESHVHQIVYVSATPGDYENEQTETVI-EQIIRPTGLLDPEVEVRPTMGQIDDLLG 59

Query: 574 EIN 576
           EIN
Sbjct: 60  EIN 62


>gi|16802260|ref|NP_463745.1| transcription-repair coupling factor [Listeria monocytogenes EGD-e]
 gi|224503466|ref|ZP_03671773.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           R2-561]
 gi|284803047|ref|YP_003414912.1| transcription-repair coupling factor [Listeria monocytogenes
           08-5578]
 gi|284996188|ref|YP_003417956.1| transcription-repair coupling factor [Listeria monocytogenes
           08-5923]
 gi|16409579|emb|CAD00741.1| transcription-repair coupling factor [Listeria monocytogenes EGD-e]
 gi|284058609|gb|ADB69550.1| transcription-repair coupling factor [Listeria monocytogenes
           08-5578]
 gi|284061655|gb|ADB72594.1| transcription-repair coupling factor [Listeria monocytogenes
           08-5923]
          Length = 1179

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 140/320 (43%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V+    Y          P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    + +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++ + L EL+++    + Q L + +  DLEML    S    + + +Y+    P 
Sbjct: 240 VKRLEKKMMLTLNELKEQE---DKQALIENLEEDLEMLR---SGVKPDMFFKYIGLAYP- 292

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +LF+Y+P+++ + +DE
Sbjct: 293 -DPASLFDYLPKNTAILLDE 311



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H ++   E   +I     G+FDVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 859 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917

Query: 666 RSKTSLIQTIGRAAR 680
              + L Q  GR  R
Sbjct: 918 ---SQLYQLRGRVGR 929


>gi|47096207|ref|ZP_00233806.1| transcription-repair coupling factor [Listeria monocytogenes str.
           1/2a F6854]
 gi|224500335|ref|ZP_03668684.1| transcription-repair coupling factor [Listeria monocytogenes
           Finland 1988]
 gi|254901001|ref|ZP_05260925.1| transcription-repair coupling factor [Listeria monocytogenes J0161]
 gi|254913931|ref|ZP_05263943.1| transcription-repair coupling factor [Listeria monocytogenes J2818]
 gi|47015455|gb|EAL06389.1| transcription-repair coupling factor [Listeria monocytogenes str.
           1/2a F6854]
 gi|293591949|gb|EFG00284.1| transcription-repair coupling factor [Listeria monocytogenes J2818]
          Length = 1179

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 140/320 (43%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V+    Y          P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    + +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++ + L EL+++    + Q L + +  DLEML    S    + + +Y+    P 
Sbjct: 240 VKRLEKKMMLTLNELKEQE---DKQALIENLEEDLEMLR---SGVKPDMFFKYIGLAYP- 292

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +LF+Y+P+++ + +DE
Sbjct: 293 -DPASLFDYLPKNTAILLDE 311



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H ++   E   +I     G+FDVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 859 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917

Query: 666 RSKTSLIQTIGRAAR 680
              + L Q  GR  R
Sbjct: 918 ---SQLYQLRGRVGR 929


>gi|42518364|ref|NP_964294.1| transcription-repair coupling factor [Lactobacillus johnsonii NCC
           533]
 gi|41582649|gb|AAS08260.1| transcription-repair coupling factor [Lactobacillus johnsonii NCC
           533]
          Length = 1165

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 125/308 (40%), Gaps = 27/308 (8%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           EK  LL GV        + ++++  Q+P I++  N+  A  L  E  N  P + V  F  
Sbjct: 23  EKRSLLTGVNSGAFAAVLMQMLKVWQQPLILVEDNEEKAQTLLDELGNLLPDDMVFSF-- 80

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
                 P      T T I     +++++  +   A +    R   +VV+  +  Y +   
Sbjct: 81  ------PVDATIATQTAIASPDELSQRLQTLEFLAEK----RAGIVVVTPQALQYKLSDP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             +++     K     +  +L   L +  Y+R+ I    G F   GD ++I+P   E+  
Sbjct: 131 RDFTKAKKIFKPEAEFDLDKLTEWLTQAGYRRESIVARPGEFARRGDIVDIYPLDQEN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++++ + EF   T + +   ++I I      V        A++ IK+++   +
Sbjct: 190 IRIEFFGDEVDTVKEFDSATQRSLEEKDSISIGPALDRVFSPHNFQEAVEKIKQDMSESI 249

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
            E E          ++      +++LE  G   +      YL  R+       L +Y+ +
Sbjct: 250 AEEES---------VKNHFVKAIDLLEAGGLPDNYAFLIDYLLPRS-----FNLIDYLDK 295

Query: 468 DSLLFVDE 475
           D LL  D+
Sbjct: 296 DGLLLFDD 303



 Score = 37.4 bits (85), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           ++ Y+H  +   +  +I+      +FD+LV   ++  G+D+P    + + DAD  G L  
Sbjct: 851 KIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVEDADHYG-LSQ 909

Query: 668 KTSLIQTIGRAAR 680
              L   IGR+AR
Sbjct: 910 LYQLRGRIGRSAR 922


>gi|75759615|ref|ZP_00739701.1| Transcription-repair coupling factor [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74492906|gb|EAO56036.1| Transcription-repair coupling factor [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 1186

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 24  IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 83

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 84  LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 130

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 131 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 190

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E++K    + ++  +  L + 
Sbjct: 191 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVKFGPATEFLFSQEELKSG 249

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +++++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 250 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 301

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PED ++ +DE
Sbjct: 302 KEPASLIDYLPEDGVVILDE 321



 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 868 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 926

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 927 ---SQLYQLRGRVGRS 939


>gi|260102336|ref|ZP_05752573.1| transcription-repair coupling factor [Lactobacillus helveticus DSM
           20075]
 gi|260083845|gb|EEW67965.1| transcription-repair coupling factor [Lactobacillus helveticus DSM
           20075]
          Length = 1165

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 104/236 (44%), Gaps = 15/236 (6%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + +++  ++   I++  N+  A  LY E     P  +V+ F   
Sbjct: 24  KNSLITGANAGAFSLLLKQIVTELKTTLILVEENENKAQNLYGELSAILPDGSVQIF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                P      T T +     ++ +I+     A   LL +   IVV++   + Y +   
Sbjct: 81  -----PVDATIATQTAVSSPDELSNRIE-----ALNFLLSKKSGIVVTTPQGLQYKLSDP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           + ++Q     + G   E  +L   LV   YK++ +    G F + GD ++++P   E+  
Sbjct: 131 QEFAQAKKDFEPGKEYELTDLNKWLVSLGYKKEALVARPGEFAIRGDILDVYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
            R+  FG++I+ I EF   T +  + ++ ++I A    V     + TA + I++++
Sbjct: 190 VRIEFFGDEIDTIKEFDLATQRSQKEIDHVEISAAQDRVFSVEAIKTAAEAIEQDM 245


>gi|229188339|ref|ZP_04315388.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 10876]
 gi|228595138|gb|EEK52908.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 10876]
          Length = 1176

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/320 (19%), Positives = 148/320 (46%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +++++E L   + +L  +   L+ + LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTKVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PED ++ +DE
Sbjct: 292 KEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|257886022|ref|ZP_05665675.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,501]
 gi|257821878|gb|EEV49008.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,501]
          Length = 1173

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 127/307 (41%), Gaps = 25/307 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G+ GS KT   A+  +   +  I++ PN   A QL  + ++  P + +  F     
Sbjct: 27  QLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHVIPQDQIHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYG-IGSVE 288
                      D  +  E + +    R    AT  +L E+   I +  V+ ++  + + +
Sbjct: 82  ---------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLPVASLHKRLPNKK 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           ++ Q  +   IGD ++ + L   L    Y R+++    G F + G  I+I+P        
Sbjct: 133 TWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSIIDIYPLTT-TYPV 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           RV +F  +I+ +  F   T + I   E I +   S  V     L   ++ +++ L+ RL 
Sbjct: 192 RVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIEQMQKMLEKRLA 251

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
              +E      Q    R+T   +    T   +    YS  L      +   T+ +Y P +
Sbjct: 252 ATTEEADREFLQDYFGRLTSSWQAGVPTEEAKF---YSDLLY-----QESVTILDYFPSN 303

Query: 469 SLLFVDE 475
           SLL VD+
Sbjct: 304 SLLVVDD 310



 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+ Y H ++   +    + +   G++DVLV   ++  G+DIP    + + +AD  G    
Sbjct: 858 RIGYAHGQMTEAQLENTLFEFIEGQYDVLVATTIIETGVDIPNANTLFVENADYMGL--- 914

Query: 668 KTSLIQTIGRAARN 681
            ++L Q  GR  R+
Sbjct: 915 -STLYQLRGRVGRS 927


>gi|328952684|ref|YP_004370018.1| transcription-repair coupling factor [Desulfobacca acetoxidans DSM
           11109]
 gi|328453008|gb|AEB08837.1| transcription-repair coupling factor [Desulfobacca acetoxidans DSM
           11109]
          Length = 1168

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 98/226 (43%), Gaps = 5/226 (2%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           D    + QLL  +  R+    L G++ +  + T+ ++   + RP +++ P+       Y 
Sbjct: 3   DNTVRLYQLLMAVEPRQTPLELYGLSPAAASLTLVRLWRELHRPILLVTPSTGQQVSFYG 62

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           + K F   +  +  VS      P    P  +     E + + +    R +A  +L  R +
Sbjct: 63  DLKFFL--SGCQEVVSSDASTSPLYIFPEHENLPFVELTPDCKTASHRLAAAYALSARIN 120

Query: 272 CIVVSS--VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
             ++++   + +  +   +  S +I  L +G+ +++   L+ L    Y R+ +   RG +
Sbjct: 121 MPIITATPAALLQPLPPRDKLSTIIEYLVVGEEIDRDRFLAHLQAGGYTRRPLVEERGDY 180

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            V G  I+ FP  L     R   +G+ I+ +  F P T + +R+ E
Sbjct: 181 SVRGGVIDFFPP-LSSYPVRAEFWGDTIDSLRHFNPATQRSLRHFE 225


>gi|228919004|ref|ZP_04082384.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228840653|gb|EEM85914.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 1176

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/320 (19%), Positives = 148/320 (46%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +++++E L   + +L  +   L+ + LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTKVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PED ++ +DE
Sbjct: 292 KEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|167747443|ref|ZP_02419570.1| hypothetical protein ANACAC_02163 [Anaerostipes caccae DSM 14662]
 gi|317471172|ref|ZP_07930543.1| transcription-repair coupling factor [Anaerostipes sp. 3_2_56FAA]
 gi|167652805|gb|EDR96934.1| hypothetical protein ANACAC_02163 [Anaerostipes caccae DSM 14662]
 gi|316901387|gb|EFV23330.1| transcription-repair coupling factor [Anaerostipes sp. 3_2_56FAA]
          Length = 1175

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 126/307 (41%), Gaps = 23/307 (7%)

Query: 220 NAVEYFVSYYDYYQPEA-YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
           N  + +V  Y ++  +A Y P  D            I + R     S+++    + V SV
Sbjct: 61  NKAKEWVENYRFFGEDAVYFPAKDPLFYSADVHGNAIAKERLRGIESIIKGQGGVFVLSV 120

Query: 279 SCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             +   +  +    +  V + +   V ++++        Y+R       G F V G  ++
Sbjct: 121 DALMDRVVPLAEIKKNRVMISLETEVSEQDITKKFTAMGYERTPFVEAAGEFAVRGGIVD 180

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           I+P    D  +R+ ++G +++ I  F   + + I  V+++ +Y  +  V     ++  +K
Sbjct: 181 IYP-FTSDCPYRIELWGEEVDSIRSFDAQSQRSIEEVKSLTVYPATEIVLSEERISQGLK 239

Query: 398 YIKEELK------MRLIELEKEGRLL-EAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
            I+ E +       +  E +KE RL  E QR+ + ++ +L ML        +E Y  Y  
Sbjct: 240 KIEAEYQDLKETFHKAFETDKEVRLTKEYQRIREELS-ELSML------IGVEGYLPYFY 292

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
            R          +Y P+D+ ++VDE      +  G +        +  E G+ LP  MD 
Sbjct: 293 DR-----LVCFLDYFPKDTAVYVDEPQHVEERGRGFFLEFTESMKSRLEAGYLLPGQMDT 347

Query: 511 RPLRFEE 517
               FEE
Sbjct: 348 VAC-FEE 353



 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N +V + H +++  E   I+      + DVLV   ++  GLDIP    + I DA++ G L
Sbjct: 863 NAKVAFAHGQMRERELENIMMQFMEKEIDVLVSTTIIETGLDIPNVNTMIIHDANQLG-L 921

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITK 695
                L   +GR+ RN  + ++   DT+ K
Sbjct: 922 SQLYQLRGRVGRSNRNAFAFLMYKRDTLLK 951


>gi|328463460|gb|EGF35111.1| transcription-repair coupling factor [Lactobacillus helveticus MTCC
           5463]
          Length = 1055

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 104/236 (44%), Gaps = 15/236 (6%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + +++  ++   I++  N+  A  LY E     P  +V+ F   
Sbjct: 24  KNSLITGANAGAFSLLLKQIVTELKTTLILVEENENKAQNLYGELSAILPDGSVQIF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                P      T T +     ++ +I+     A   LL +   IVV++   + Y +   
Sbjct: 81  -----PVDATIATQTAVSSPDELSNRIE-----ALNFLLSKKSGIVVTTPQGLQYKLSDP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           + ++Q     + G   E  +L   LV   YK++ +    G F + GD ++++P   E+  
Sbjct: 131 QEFAQAKKDFEPGKEYELTDLNKWLVSLGYKKEALVARPGEFAIRGDILDVYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
            R+  FG++I+ I EF   T +  + ++ ++I A    V     + TA + I++++
Sbjct: 190 VRIEFFGDEIDTIKEFDLATQRSQKEIDHVEISAAQDRVFSVEAIKTAAEAIEQDM 245


>gi|329666673|gb|AEB92621.1| transcription-repair coupling factor [Lactobacillus johnsonii DPC
           6026]
          Length = 1165

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 125/308 (40%), Gaps = 27/308 (8%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           EK  LL GV        + ++++  Q+P I++  N+  A  L  E  N  P + V  F  
Sbjct: 23  EKRSLLTGVNSGAFAAVLMQMLKVWQQPLILVEDNEEKAQTLLDELGNLLPDDMVFSF-- 80

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
                 P      T T I     +++++  +   A +    R   +VV+  +  Y +   
Sbjct: 81  ------PVDATIATQTAIASPDELSQRLQTLEFLAEK----RAGIVVVTPQALQYKLSDP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             +++     K     +  +L   L +  Y+R+ I    G F   GD ++I+P   E+  
Sbjct: 131 RDFTKAKKIFKPEAEFDLDKLTEWLTQAGYRRESIVARPGEFARRGDILDIYPLDQEN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++++ + EF   T + +   ++I I      V        A++ IK+++   +
Sbjct: 190 IRIEFFGDEVDTVKEFDSATQRSLEEKDSISIGPALDRVFSPHNFQEAVEKIKQDMSESI 249

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
            E E          ++      +++LE  G   +      YL  R+       L +Y+ +
Sbjct: 250 AEEES---------VKNHFVKAIDLLEAGGLPDNYAFLIDYLLPRS-----FNLIDYLDK 295

Query: 468 DSLLFVDE 475
           D LL  D+
Sbjct: 296 DGLLLFDD 303



 Score = 37.4 bits (85), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           ++ Y+H  +   +  +I+      +FD+LV   ++  G+D+P    + + DAD  G L  
Sbjct: 851 KIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVEDADHYG-LSQ 909

Query: 668 KTSLIQTIGRAAR 680
              L   IGR+AR
Sbjct: 910 LYQLRGRIGRSAR 922


>gi|255281409|ref|ZP_05345964.1| transcription-repair coupling factor [Bryantella formatexigens DSM
           14469]
 gi|255267897|gb|EET61102.1| transcription-repair coupling factor [Bryantella formatexigens DSM
           14469]
          Length = 1179

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 143/325 (44%), Gaps = 37/325 (11%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           QL  G+     +  + G   + K+  M  V E  ++  I+   +++ A ++Y  ++ FF 
Sbjct: 16  QLCSGLKKNRGILQVSGCIEAQKSHLMYSVGEPYKKKLII-TYSELRAKEIYENYR-FFD 73

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
              + Y              P  D         + QI + R +  ++LLE     V++++
Sbjct: 74  SKVLLY--------------PARDLMFYSADIRSHQIGQQRMAVLQALLEEEQVTVITTL 119

Query: 279 -SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             C+  +  +      +++      +  ++L   L++  Y++       G F V G  ++
Sbjct: 120 PGCMEHVLPLSCIRDHVLEFAQDSELNPEKLSGQLIEMGYEKTVQVDAPGQFAVRGGIVD 179

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP   E+   R+ ++G++I+ I  F   + + I N+ET++IY     V        A +
Sbjct: 180 IFPL-TEENPVRIELWGDEIDSIRSFDAESQRSIENLETVRIYPAGEAVISDVQAAKAAE 238

Query: 398 YIKEELKMR------LIELEKEGRLLE-AQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
            IK+E K +       ++ E+  R+ E AQ + +R+   LE+ E TG    +E ++ YL 
Sbjct: 239 RIKKESKKQEKIFRDAMKTEEAHRVRETAQEVCERL---LELKERTG----LEAFTPYLY 291

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDE 475
                E   +  +Y   D+L+ +DE
Sbjct: 292 -----EETVSFLDYFGTDALIMLDE 311



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 19/115 (16%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           QV  VY+ +N   +         +T ++A+ L E        V + H ++K  E   I+ 
Sbjct: 836 QVYYVYNRVNTIVE---------MTNKIAKLLPE------ANVAFAHGQMKERELERIMY 880

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           D   G  DVLV   ++  GLDI     + I DAD  G     + L Q  GR  R+
Sbjct: 881 DFINGDIDVLVSTTIIETGLDISNVNTMIIHDADTMGL----SQLYQLRGRVGRS 931


>gi|304315715|ref|YP_003850860.1| transcription-repair coupling factor [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777217|gb|ADL67776.1| transcription-repair coupling factor [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 1166

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/289 (19%), Positives = 128/289 (44%), Gaps = 20/289 (6%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           IA++ + I       L+ G+T S K      +I+ + +  + +    + A  +Y +  +F
Sbjct: 12  IAEIDEAIEKERMPLLIYGLTDSQKAHIAHYIIKKLNKKVLFITYADVEARAIYEDLISF 71

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              +A                +P  D    K  + +  +   R  A + +++      V+
Sbjct: 72  LNGDAY--------------LIPSRDALFYKVDASSLDLIGKRLIAVKKIIDDKPSAFVA 117

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           S+  +   + S + + +   + KIGD ++ +EL SSL+   Y+R  +   +G F + G  
Sbjct: 118 SIDGVLNKVASKDIFLRYSRKYKIGDIIDLEELSSSLITMGYERVPMVEGKGQFSIRGGI 177

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+ F S +ED  +R+ +F + I+ I  F   T + + N+  ++++    ++     +   
Sbjct: 178 IDFF-SPMEDEGFRIELFDDVIDSIRSFDVFTQRSLNNLSEVELFPAREFILEDENIKKG 236

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
           M+ +   +   + ++ KE     A++++++     E++E     +S+ N
Sbjct: 237 MENLSSNVNSYVSKI-KETHSGRAEKIKKKFD---EIMENISETKSVPN 281



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +RMA  + E +    + V +   +   LE I I      G +D+LV   ++  GLDIP  
Sbjct: 846 ERMASIIKELVPSARVAVAHGQMDEGKLENIMI--GFLNGDYDILVCTTIIETGLDIPNV 903

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + + D+DK G     + L Q  GR  R+
Sbjct: 904 NTIIVYDSDKMGL----SQLYQLRGRVGRS 929


>gi|206972595|ref|ZP_03233538.1| transcription-repair coupling factor [Bacillus cereus AH1134]
 gi|228950602|ref|ZP_04112737.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229176654|ref|ZP_04304059.1| Transcription-repair-coupling factor [Bacillus cereus 172560W]
 gi|206732497|gb|EDZ49676.1| transcription-repair coupling factor [Bacillus cereus AH1134]
 gi|228606821|gb|EEK64237.1| Transcription-repair-coupling factor [Bacillus cereus 172560W]
 gi|228809077|gb|EEM55561.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 1176

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E ++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKENVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +++++E L   + +L  +   L+ + LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTKVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PED ++ +DE
Sbjct: 292 KEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|302542946|ref|ZP_07295288.1| transcription-repair coupling factor [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460564|gb|EFL23657.1| transcription-repair coupling factor [Streptomyces himastatinicus
           ATCC 53653]
          Length = 1177

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 16/210 (7%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           A+A+ ++G     +  + L    + + F +A +  +  RP + +      A  L +  ++
Sbjct: 15  ALAEAVRGAADGNRPHVDLVGPPAARPFAVAALARSAGRPVLAVTATGREAEDLAAALRS 74

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
             P + V  + S+ +    E   PR+DT   + + +     R+ H +          +VV
Sbjct: 75  LLPPDGVVEYPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPSPDDPAAGPVSVVV 129

Query: 276 SSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
           + V  +      G+G +E      V L+ G S +  E++  L    Y R ++   RG F 
Sbjct: 130 APVRSVLQPQVKGLGELEP-----VSLRAGRSADLPEVVDGLAAAAYSRVELVEKRGEFA 184

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           V G  +++FP   E+   RV  +G+D+EEI
Sbjct: 185 VRGGILDVFPP-TEEHPLRVEFWGDDVEEI 213


>gi|125622895|ref|YP_001031378.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124491703|emb|CAL96622.1| Transcription-repair coupling factor (TRCF) [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300069633|gb|ADJ59033.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 1180

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 111/254 (43%), Gaps = 21/254 (8%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   + +  +G   RE+  LL G++G+ K+  MA   E +    I++  ++  A +LY 
Sbjct: 8   DQNWQLQKWQQGFSKRERT-LLTGLSGTAKSLVMANAYENVADKYIIVTDSQFHANELYD 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM--RHSATRSLLER 269
           E         V  F S  + Y   A   +               DR+  R  A   LL+ 
Sbjct: 67  ELSTLLGEEKVFQFFSDDNIYAEFALASK---------------DRIAYRLEALNFLLDE 111

Query: 270 --NDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
                +VV  ++    + + E++ +  + L  GD  +   L++ L K  Y++    +  G
Sbjct: 112 RATGFLVVPFLALRSYLPAPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVMTPG 171

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            F + GD ++I+P   E+   R+  FG++++ I  F   + + + ++E ++IY  S ++ 
Sbjct: 172 EFSMRGDIVDIYPLDAEN-PVRLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFIL 230

Query: 388 PRPTLNTAMKYIKE 401
                +   K + E
Sbjct: 231 TDNEFDKGAKSLTE 244


>gi|328956571|ref|YP_004373957.1| transcription-repair coupling factor [Carnobacterium sp. 17-4]
 gi|328672895|gb|AEB28941.1| transcription-repair coupling factor [Carnobacterium sp. 17-4]
          Length = 1173

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 17/227 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS +T  ++ ++   ++P I++  N   A QL  +F ++ P + +  F     
Sbjct: 27  QLITGLSGSARTLVLSTLVAEKKKPFIIVTHNLFHANQLMEDFADWVPEDRLHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVE 288
                      D  I  E S+     R    AT   L  E+   ++V        +   E
Sbjct: 82  ---------PVDEMIYAEMSVASPEARAERVATLDFLLSEKFGVVIVPLAGVRKVMPPKE 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            +      +K G  +E   L   LV   Y RQ +    G F + G  ++I+ S  E+   
Sbjct: 133 IWKAAQFTIKQGGELELTHLSQRLVDMGYTRQQLVNSPGEFSIRGGIVDIY-SLTEEFPI 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           R+ +F  +++ +  F   T + I+ +E + I   +  V  +  L  A
Sbjct: 192 RIDLFDTEVDSLRYFDAATQRSIQTIEKVTILPATDTVYTKEQLTAA 238


>gi|116510854|ref|YP_808070.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116106508|gb|ABJ71648.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 1162

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 110/254 (43%), Gaps = 21/254 (8%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   + +  +G   RE+  LL G++G+ K+  MA   E +    I++  ++  A +LY 
Sbjct: 8   DQNWQLQKWQQGFSKRERT-LLTGLSGTAKSLVMANAYENVAEKYIIVTDSQFHANELYD 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM--RHSATRSLLER 269
           E         V  F S  + Y   A   +               DR+  R  A   LL+ 
Sbjct: 67  ELSTLLGEEKVFQFFSDDNIYAEFALASK---------------DRVAYRLEALNFLLDE 111

Query: 270 NDC--IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
                +VV  ++    + S E++ +  + L  GD  +   L++ L    Y++    +  G
Sbjct: 112 KSTGFLVVPFLALRSYLPSPENFLENYLLLTSGDEYDLSNLVNLLSNAGYEKTQRVMTPG 171

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            F + GD ++I+P   E+   R+  FG++++ I  F   + + + ++E ++IY  S ++ 
Sbjct: 172 EFSMRGDIVDIYPLDAENPV-RLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFIL 230

Query: 388 PRPTLNTAMKYIKE 401
                +   K + E
Sbjct: 231 TDNEFDKGAKSLTE 244


>gi|221195325|ref|ZP_03568381.1| transcription-repair coupling factor [Atopobium rimae ATCC 49626]
 gi|221185228|gb|EEE17619.1| transcription-repair coupling factor [Atopobium rimae ATCC 49626]
          Length = 1150

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/303 (20%), Positives = 120/303 (39%), Gaps = 37/303 (12%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           L V    +   +A +     RP +++   +  A +       +  ++ V  +    DY  
Sbjct: 31  LAVAQGARPLVLASIWAQCPRPTMLVVAGEEAADRTARALAAWLGNDVVSRYPDRRDY-- 88

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQ 292
                P +D      ++ ++    MR +A   L     CIVV+S  + +  +  V S   
Sbjct: 89  -----PWSD------ATPDDACIGMRCNAVARLAAGEKCIVVASAHALLRRVPPVGSGYF 137

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
           +     +GD V  +E+ + LV   Y       + G+F V GD++++FP+     A R+  
Sbjct: 138 VPSTFSVGDEVLFEEVPALLVGMGYVDTGEVDVPGSFHVHGDTVDVFPAQ-STCAVRLEF 196

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG++I+ I      TGQ I  +E++ +           T+  A                 
Sbjct: 197 FGDEIDRIRRMVAATGQTIGELESVTVVPCRELAFTTETIRNA----------------- 239

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           E  L    +    +  DLE+++   S  ++E Y   L G+       +  E+I  ++L+ 
Sbjct: 240 ERALYNRAQENSAVAADLELIQRGASAPALERYLPILYGKT-----ASPLEHISPETLVV 294

Query: 473 VDE 475
           + E
Sbjct: 295 LAE 297


>gi|229824545|ref|ZP_04450614.1| hypothetical protein GCWU000282_01889 [Catonella morbi ATCC 51271]
 gi|229785916|gb|EEP22030.1| hypothetical protein GCWU000282_01889 [Catonella morbi ATCC 51271]
          Length = 1183

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 15/210 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G+  S +   +A++ +A  RP +++ P      QL  +     P  +V+       
Sbjct: 25  QLVTGIDDSARAVMLAQLFQARPRPLLIVEPIASKLGQLVDDLTQLLPQVSVQ------- 77

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                A+V      IE   +  +Q+ R R      L     CIVV++V+ +   +     
Sbjct: 78  -----AFVVEEALAIEFAFASEDQM-RDRIQILNQLAHGEPCIVVTNVAGLRKQLTHPNQ 131

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           + Q    L++GD+ E+++L S L    Y R  +    G F V G  I+ FP   E    R
Sbjct: 132 WRQAQHTLELGDNWERRQLESVLTAWGYHRASLVEQPGEFSVRGSIIDFFPVSAE-YPIR 190

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           +  F  +++ I  F   T   I N+++++I
Sbjct: 191 LDFFDTELDSIRAFNAETQSSIENLDSVQI 220



 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y H ++  +E   ++ D   G +DVLV   ++  G+DIP    + + DAD  G    
Sbjct: 859 RVAYAHGQMSEVELETVLVDFIQGAYDVLVTTTIIETGVDIPNVNTLFVEDADHMGL--- 915

Query: 668 KTSLIQTIGRAARN 681
            ++L Q  GR  R 
Sbjct: 916 -STLYQLRGRVGRT 928


>gi|229039959|ref|ZP_04189723.1| Transcription-repair-coupling factor [Bacillus cereus AH676]
 gi|229107740|ref|ZP_04237377.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-15]
 gi|296500886|ref|YP_003662586.1| transcription-repair coupling factor [Bacillus thuringiensis
           BMB171]
 gi|228675713|gb|EEL30920.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-15]
 gi|228727367|gb|EEL78560.1| Transcription-repair-coupling factor [Bacillus cereus AH676]
 gi|296321938|gb|ADH04866.1| transcription-repair coupling factor [Bacillus thuringiensis
           BMB171]
          Length = 1176

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +++++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PED ++ +DE
Sbjct: 292 KEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|312898732|ref|ZP_07758121.1| transcription-repair coupling factor [Megasphaera micronuciformis
           F0359]
 gi|310620163|gb|EFQ03734.1| transcription-repair coupling factor [Megasphaera micronuciformis
           F0359]
          Length = 1092

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 114/260 (43%), Gaps = 27/260 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K+  + G+ GS K+   A V+    + A+++ P         ++ + F P    +  V  
Sbjct: 25  KIYGVYGLGGSAKSAYAAHVLAKTDKNAVIVVPTTEQVNGWLTDLQYFSP----QLRVYT 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           Y   Q   +   T + +E  +   E +  +R S       R   +V ++      + + +
Sbjct: 81  YPLVQHTVFTTTTKS-LELAAKQMEALTALRGS-------RQAVVVATAEEAAQFVTAPQ 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                ++  K+G+  E++ +LS LV   Y+R D+   RG F V GD I+I+P + E    
Sbjct: 133 KIDDAVLSFKVGEDYERETILSGLVSGGYERSDLVDRRGLFSVRGDIIDIYPLN-EKEPI 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FG+ +E I  F   T +     ++++I            L  A+ Y K++ K  L+
Sbjct: 192 RLEFFGDTLENIRYFNEQTQKSSIKTDSVRI------------LPFALAYDKDDEKTTLL 239

Query: 409 ELEKEGRLL--EAQRLEQRI 426
           +    G ++  E  R+++ +
Sbjct: 240 DYGNNGIIIWDEGNRIKEEL 259


>gi|229148463|ref|ZP_04276720.1| Transcription-repair-coupling factor [Bacillus cereus m1550]
 gi|228635005|gb|EEK91577.1| Transcription-repair-coupling factor [Bacillus cereus m1550]
          Length = 1176

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +++++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PED ++ +DE
Sbjct: 292 KEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|30018324|ref|NP_829955.1| transcription-repair coupling factor [Bacillus cereus ATCC 14579]
 gi|229125571|ref|ZP_04254604.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4]
 gi|29893864|gb|AAP07156.1| Transcription-repair coupling factor [Bacillus cereus ATCC 14579]
 gi|228657888|gb|EEL13693.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4]
          Length = 1176

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +++++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PED ++ +DE
Sbjct: 292 KEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|228956495|ref|ZP_04118292.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228803185|gb|EEM50006.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 1183

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 21  IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 80

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 81  LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 127

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 128 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 187

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 188 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSG 246

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +++++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 247 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 298

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PED ++ +DE
Sbjct: 299 KEPASLIDYLPEDGVVILDE 318



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G++DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 865 DARVTYAHGKMNESELESVMLSFLEGQYDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 923

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 924 ---SQLYQLRGRVGRS 936


>gi|218513868|ref|ZP_03510708.1| transcription-repair coupling factor [Rhizobium etli 8C-3]
          Length = 411

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 127/307 (41%), Gaps = 25/307 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G+ GS KT   A+  +   +  I++ PN   A QL  + ++  P + +  F     
Sbjct: 27  QLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHVIPQDQIHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYG-IGSVE 288
                      D  +  E + +    R    AT  +L E+   I +  V+ ++  + + +
Sbjct: 82  ---------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLPVASLHKRLPNKK 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           ++ Q  +   IGD ++ + L   L    Y R+++    G F + G  I+I+P        
Sbjct: 133 TWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSIIDIYPLTTTYPV- 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           RV +F  +I+ +  F   T + I   E I +   S  V     L   ++ +++ L+ RL 
Sbjct: 192 RVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIEQMQKMLEKRLA 251

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
              +E    + + L+          +     +  + YS  L   +      T+ +Y P +
Sbjct: 252 ATTEEA---DREFLQDYFGQLTSSWQAGVPTEEAKFYSDLLYQES-----VTILDYFPSN 303

Query: 469 SLLFVDE 475
           SLL VD+
Sbjct: 304 SLLVVDD 310


>gi|218231044|ref|YP_002364903.1| transcription-repair coupling factor [Bacillus cereus B4264]
 gi|218159001|gb|ACK58993.1| transcription-repair coupling factor [Bacillus cereus B4264]
          Length = 1176

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +++++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PED ++ +DE
Sbjct: 292 KEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|229142859|ref|ZP_04271302.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST24]
 gi|228640622|gb|EEK97009.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST24]
          Length = 1183

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 21  IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 80

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 81  LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLATGENGIIVA 127

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 128 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 187

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 188 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSG 246

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +++++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 247 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 298

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PED ++ +DE
Sbjct: 299 KEPASLIDYLPEDGVVILDE 318



 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 865 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 923

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 924 ---SQLYQLRGRVGRS 936


>gi|312131279|ref|YP_003998619.1| transcriptioN-repair coupling factor [Leadbetterella byssophila DSM
           17132]
 gi|311907825|gb|ADQ18266.1| transcription-repair coupling factor [Leadbetterella byssophila DSM
           17132]
          Length = 1113

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 95/191 (49%), Gaps = 17/191 (8%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA--VEYFVSYYDYY 232
           G+TGS K+ + A + E +++  +V+  ++  A   Y++ +N + + A  + YF + + + 
Sbjct: 33  GLTGSLKSISTAALYENLKKFILVILEDREEALYFYNDLQNLYGYEAEEIAYFPASFKHE 92

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
             E         IE  + I       R S+T+ LL     IV    + +  + S +S   
Sbjct: 93  SGE---------IENANIIQRSALLTRFSSTQPLL-----IVTYPEALVEKVVSKKSLVA 138

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             +++K+GD+++   +   L   Q+++ D     G F V G  +++F S+  +V +R+ +
Sbjct: 139 NTLKVKVGDTLDLNFVTELLDSYQFEKTDFVYEPGQFAVRGGILDVF-SYSAEVPYRIEL 197

Query: 353 FGNDIEEISEF 363
           FG+++E I  F
Sbjct: 198 FGDEVESIRAF 208


>gi|288554664|ref|YP_003426599.1| transcription-repair coupling factor [Bacillus pseudofirmus OF4]
 gi|288545824|gb|ADC49707.1| transcription-repair coupling factor (TRCF) [Bacillus pseudofirmus
           OF4]
          Length = 1180

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 132/310 (42%), Gaps = 26/310 (8%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K QLL G+TGS +T  MA + +  ++  +V+  N   A ++Y +  +      V  +   
Sbjct: 26  KEQLLSGLTGSSRTLLMAALYKETKKTQVVITHNLFQAQKVYEDLIDLVGEEDVHLY--- 82

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
                     P  +    + +  + ++   R      L+   + I++  ++ I  +    
Sbjct: 83  ----------PVNELISSEIAIASPEMKSQRLDVLNKLVAGFEGIIIVPLAGIRRLLP-P 131

Query: 289 SYSQMIVQLKIG---DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +Y     QL I    D  E   +++ LV   ++R D+    G F V G  I+I+P   E 
Sbjct: 132 TYLWKDSQLNISVGRDIGEIHNVITKLVMMGFERVDMVSSPGEFSVRGGIIDIYPL-TES 190

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              RV +F  +I+ I  F   T +  + ++ I I      +        A   ++E+L  
Sbjct: 191 NPIRVELFDTEIDSIRTFLIETQRSEKELKEITIGPAEEVILQDQHYQHAANRLQEQLSA 250

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
            L +++ +      ++L Q I+Y++  L+   S Q +  Y  +       E   TL  Y+
Sbjct: 251 TLKKVKAKQT---KEKLSQNISYEIGQLKQRSSFQGMYKYMSFYY-----EVKSTLLSYL 302

Query: 466 PEDSLLFVDE 475
           P+D+L+ +DE
Sbjct: 303 PDDALIIIDE 312



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +RM E ++  +   + +V + H ++   E   I+ D   G  DVLV   ++  G+DIP  
Sbjct: 848 ERMTEQIS--MLVPDAKVSFAHGQMNERELESIMLDFLEGNSDVLVTTTIIETGVDIPNV 905

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I DADK G     + L Q  GR  R+
Sbjct: 906 NTLIINDADKMGL----SQLYQIRGRVGRS 931


>gi|319940213|ref|ZP_08014566.1| transcription-repair coupling factor [Streptococcus anginosus
           1_2_62CV]
 gi|319810684|gb|EFW07014.1| transcription-repair coupling factor [Streptococcus anginosus
           1_2_62CV]
          Length = 1164

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 108/230 (46%), Gaps = 13/230 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QLL+G++ S K+ TMA  +E   +  +++      A +L S+  +      V  F++  D
Sbjct: 26  QLLMGLSSSTKSITMASCVEENHK-ILILTSTYSEAERLSSDLIDLVGEERVYTFLA--D 82

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                 +V  +    EK  S  E +D +  S     L     IV  + S ++    V ++
Sbjct: 83  DTPLAEFVFSSQ---EKIFSRLEALDFLLDSKQSGFL-----IVNVAASQLFLSNPV-NF 133

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +   + LKIG   E K+L+S L+   YK+    + +G F + GD ++IF      + +RV
Sbjct: 134 NSAYINLKIGQEYELKDLISQLLNSGYKQVSQVLKQGEFSIRGDILDIFERS-SQMPFRV 192

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
             FG++++ I  F P     I+NVE + ++  +  +  +    +A K I+
Sbjct: 193 EFFGDEVDGIRLFNPENQISIQNVEHVCVHPATDIIFTKADYKSAQKKIE 242


>gi|254724194|ref|ZP_05185979.1| transcription-repair coupling factor [Bacillus anthracis str.
           A1055]
          Length = 1176

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/320 (19%), Positives = 145/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++F MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLVSGMATSSRSFLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L      I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  ++    L +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPMKELWKQRQIEISLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K+++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +L +Y+PED ++ +DE
Sbjct: 292 NEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|326790211|ref|YP_004308032.1| transcription-repair coupling factor [Clostridium lentocellum DSM
           5427]
 gi|326540975|gb|ADZ82834.1| transcription-repair coupling factor [Clostridium lentocellum DSM
           5427]
          Length = 1179

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 101/190 (53%), Gaps = 13/190 (6%)

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT--FRVCGDSIEIFPSHLED 345
           ESY++++   + G+ +    L   LV+  Y+R  +G + G   F + G  I+I+ + +++
Sbjct: 142 ESYTKIV---QAGECINISRLERELVQMGYER--VGRVEGMGQFAIRGGIIDIY-TPIDE 195

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
             +R+ ++ ++++ I  F   T + I+ VE ++I  N   +     L  A+  IKE+LK 
Sbjct: 196 EPYRIELWDDEVDSIRNFNVQTQRSIQKVEALRIVPNQEIIFHLDLLKEAIPAIKEDLKK 255

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
               L + G+   A ++E+++   ++ ++   S + +E Y  Y + +       ++ +Y+
Sbjct: 256 TTKALRQAGKKESALKIEEQVGEAIDQIQNDISPRGLEMYIPYTSLK-----LVSILDYL 310

Query: 466 PEDSLLFVDE 475
           P+++LL +DE
Sbjct: 311 PKETLLIIDE 320


>gi|228937356|ref|ZP_04100003.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228976812|ref|ZP_04137225.1| Transcription-repair-coupling factor [Bacillus thuringiensis Bt407]
 gi|228782908|gb|EEM31073.1| Transcription-repair-coupling factor [Bacillus thuringiensis Bt407]
 gi|228822314|gb|EEM68295.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 1183

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 21  IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 80

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 81  LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 127

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 128 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 187

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++++P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 188 LDVYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSG 246

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +++++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 247 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 298

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PED ++ +DE
Sbjct: 299 KEPASLIDYLPEDGVVILDE 318



 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 865 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 923

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 924 ---SQLYQLRGRVGRS 936


>gi|256419455|ref|YP_003120108.1| transcription-repair coupling factor [Chitinophaga pinensis DSM
           2588]
 gi|256034363|gb|ACU57907.1| transcription-repair coupling factor [Chitinophaga pinensis DSM
           2588]
          Length = 1126

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 25/234 (10%)

Query: 157 IAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           + QL+KGIH S  +   L G+TGS  TF  A   E      +  + N +       E   
Sbjct: 16  LQQLVKGIHLSDPQYFQLTGLTGSATTFVAAGAWE------MANSVNHLFILNDREEAAY 69

Query: 216 FFPHNAVEYFVSYYD-YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           F  HN +E      D +Y P+++        +K    NE         T +L++ +   V
Sbjct: 70  F--HNDLESITQGLDIFYFPDSF--------KKAGFFNEINSSHSMLRTEALMKFSGNAV 119

Query: 275 VSSVSCIY------GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
              V   Y       + +  +Y+  +VQLK+GD ++  +LL+ LV   ++  D     G 
Sbjct: 120 HKKVLVTYPEALWEKVAASVAYTGNMVQLKVGDVLKVDDLLNKLVSWGFEFTDFVYEPGQ 179

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           + + G  ++I+ S   +  +R+ +FG DI+ I  F P +    R +  + + AN
Sbjct: 180 YALRGGILDIY-SFGNEKPYRIELFGEDIDSIRLFDPESQLSERKLNQVTLIAN 232


>gi|290894278|ref|ZP_06557245.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J2-071]
 gi|290556162|gb|EFD89709.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J2-071]
          Length = 1179

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 138/320 (43%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V+    Y          P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    + +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++   L EL KE    + Q L + +  DLEML    S    + + +Y+    P 
Sbjct: 240 VKRLEKKMTHTLNEL-KENE--DKQALVENLEEDLEMLR---SGVKPDMFFKYIGLAYP- 292

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +LF+Y+P+++ + +DE
Sbjct: 293 -DPASLFDYLPKNTAILLDE 311



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H ++   E   +I     G+FDVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 859 DARVATAHGQMGESELEAVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917

Query: 666 RSKTSLIQTIGRAAR 680
              + L Q  GR  R
Sbjct: 918 ---SQLYQLRGRVGR 929


>gi|295702293|ref|YP_003595368.1| transcription-repair coupling factor [Bacillus megaterium DSM 319]
 gi|294799952|gb|ADF37018.1| transcription-repair coupling factor [Bacillus megaterium DSM 319]
          Length = 1176

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 143/323 (44%), Gaps = 27/323 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A ++ L +G+    K QL+ G++GS ++  MA + E  + P +V+  N   A ++Y +  
Sbjct: 16  AVVSSLEEGL----KEQLVTGISGSARSVLMALLNEDKKYPLLVVTHNLYQAQKVYEDLL 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +  P   V  +             P  D    +    + ++   R        +    +V
Sbjct: 72  HLLPEKDVFLY-------------PVNDLVATEVGIASPELKAQRIEVLNYWSQHTGGVV 118

Query: 275 VSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+ ++ I  +   ++ + Q  +  ++G  ++    L  LV+  Y+R  +    G F V G
Sbjct: 119 VTPLAGIRKLLPPKARWEQTQLPFQMGIDIDVDHYLKRLVELGYERASMVSAPGEFSVRG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+I+P   E++  R+ +F  +I+ I  F     +    ++ I I   +  +  +  + 
Sbjct: 179 GIIDIYPL-TEELPVRIELFDTEIDSIRTFTIEDQRSQEQLKEISIGPATEIIVNQNEVA 237

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             ++ ++ +L   L +++     L+A  L + I  ++E L      Q +EN  +YL+   
Sbjct: 238 QGIEELEAQLASTLQQVKNAA--LKA-TLTENIKGEIEQLR---QGQLLENMFKYLSFFY 291

Query: 454 PGEPPPTLFEYIPEDSLLFVDES 476
             E P +L +Y+PE  L+  DE+
Sbjct: 292 --ESPASLLDYLPEGGLVIFDET 312



 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   +I     G++DV+V   ++  G+DIP    + + +ADK G  
Sbjct: 858 DARVTYAHGKMNETELEAVILSFLEGEYDVIVSTTIIETGVDIPNVNTLIVNNADKMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|228970242|ref|ZP_04130902.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228789477|gb|EEM37396.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|326937845|gb|AEA13741.1| transcription-repair coupling factor [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 1176

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++++P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDVYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +++++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PED ++ +DE
Sbjct: 292 KEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|30260244|ref|NP_842621.1| transcription-repair coupling factor [Bacillus anthracis str. Ames]
 gi|47525306|ref|YP_016655.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183087|ref|YP_026339.1| transcription-repair coupling factor [Bacillus anthracis str.
           Sterne]
 gi|65317513|ref|ZP_00390472.1| COG1197: Transcription-repair coupling factor (superfamily II
           helicase) [Bacillus anthracis str. A2012]
 gi|165872560|ref|ZP_02217192.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0488]
 gi|167635067|ref|ZP_02393384.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0442]
 gi|167641515|ref|ZP_02399763.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0193]
 gi|170688877|ref|ZP_02880079.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0465]
 gi|170707542|ref|ZP_02897995.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0389]
 gi|177655328|ref|ZP_02936857.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0174]
 gi|190568951|ref|ZP_03021852.1| transcription-repair coupling factor [Bacillus anthracis
           Tsiankovskii-I]
 gi|227812727|ref|YP_002812736.1| transcription-repair coupling factor [Bacillus anthracis str. CDC
           684]
 gi|229603766|ref|YP_002864705.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0248]
 gi|254682320|ref|ZP_05146181.1| transcription-repair coupling factor [Bacillus anthracis str.
           CNEVA-9066]
 gi|254735455|ref|ZP_05193163.1| transcription-repair coupling factor [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744643|ref|ZP_05202322.1| transcription-repair coupling factor [Bacillus anthracis str.
           Kruger B]
 gi|254756348|ref|ZP_05208377.1| transcription-repair coupling factor [Bacillus anthracis str.
           Vollum]
 gi|254762404|ref|ZP_05214246.1| transcription-repair coupling factor [Bacillus anthracis str.
           Australia 94]
 gi|30253565|gb|AAP24107.1| transcription-repair coupling factor [Bacillus anthracis str. Ames]
 gi|47500454|gb|AAT29130.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177014|gb|AAT52390.1| transcription-repair coupling factor [Bacillus anthracis str.
           Sterne]
 gi|164711688|gb|EDR17233.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0488]
 gi|167510500|gb|EDR85898.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0193]
 gi|167529541|gb|EDR92291.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0442]
 gi|170127538|gb|EDS96412.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0389]
 gi|170667101|gb|EDT17862.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0465]
 gi|172080169|gb|EDT65262.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0174]
 gi|190559875|gb|EDV13859.1| transcription-repair coupling factor [Bacillus anthracis
           Tsiankovskii-I]
 gi|227004902|gb|ACP14645.1| transcription-repair coupling factor [Bacillus anthracis str. CDC
           684]
 gi|229268174|gb|ACQ49811.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0248]
          Length = 1176

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/320 (19%), Positives = 145/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++F MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLVSGMATSSRSFLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L      I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  ++    L +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPMKELWKQRQIEISLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K+++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +L +Y+PED ++ +DE
Sbjct: 292 NEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|254829305|ref|ZP_05233992.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           N3-165]
 gi|258601718|gb|EEW15043.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           N3-165]
          Length = 1179

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 138/320 (43%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V+    Y          P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    + +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++   L EL KE    + Q L + +  DLEML    S    + + +Y+    P 
Sbjct: 240 VKRLEKKMTHTLNEL-KENE--DKQALVENLEEDLEMLR---SGVKPDMFFKYIGLAYP- 292

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +LF+Y+P+++ + +DE
Sbjct: 293 -DPASLFDYLPKNTAILLDE 311



 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H ++   E   +I     G+FDVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 859 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917

Query: 666 RSKTSLIQTIGRAAR 680
              + L Q  GR  R
Sbjct: 918 ---SQLYQLRGRVGR 929


>gi|229009563|ref|ZP_04166790.1| Transcription-repair-coupling factor [Bacillus mycoides DSM 2048]
 gi|228751707|gb|EEM01506.1| Transcription-repair-coupling factor [Bacillus mycoides DSM 2048]
          Length = 1176

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKQSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEVGVASPELKAQRIEVLNRLATGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E++K    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVKFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K+++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PE+ ++ +DE
Sbjct: 292 KEPASLIDYLPENGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|217965700|ref|YP_002351378.1| transcription-repair coupling factor [Listeria monocytogenes HCC23]
 gi|217334970|gb|ACK40764.1| transcription-repair coupling factor [Listeria monocytogenes HCC23]
 gi|307569753|emb|CAR82932.1| transcription-repair coupling factor [Listeria monocytogenes L99]
          Length = 1179

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 138/320 (43%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V+    Y          P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    + +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++   L EL KE    + Q L + +  DLEML    S    + + +Y+    P 
Sbjct: 240 VKRLEKKMTHTLNEL-KENE--DKQALVENLEEDLEMLR---SGVKPDMFFKYIGLAYP- 292

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +LF+Y+P+++ + +DE
Sbjct: 293 -DPASLFDYLPKNTAILLDE 311



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H ++   E   +I     G+FDVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 859 DARVATAHGQMGESELEAVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917

Query: 666 RSKTSLIQTIGRAAR 680
              + L Q  GR  R
Sbjct: 918 ---SQLYQLRGRVGR 929


>gi|229819510|ref|YP_002881036.1| transcription-repair coupling factor [Beutenbergia cavernae DSM
           12333]
 gi|229565423|gb|ACQ79274.1| transcription-repair coupling factor [Beutenbergia cavernae DSM
           12333]
          Length = 1205

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 67/328 (20%), Positives = 143/328 (43%), Gaps = 47/328 (14%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEF 213
           AA+A+L++ + +R  +  +   +   +   +A+++ A   RP +V+      A +L +  
Sbjct: 14  AAVARLVEELPARGSLDAI--ASAGVRPALLAQLLGADHPRPLVVVTATGREADELAAAL 71

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           + + P + V    ++ +    E   PR+DT   + + +     R+ H AT +  + +   
Sbjct: 72  RCYVPDDDVAVLPAW-ETLPHERLSPRSDTVARRLAVLR----RLAHPATGADAQPHTGP 126

Query: 274 VVSSV--------SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           + + V          + G+G +E      V +++G++V+ ++L + L    Y R D+   
Sbjct: 127 IRALVLPVRAMLQPVVTGLGDLEP-----VSVQVGETVDLEDLAARLTAAAYTRTDMVER 181

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           RG F V G  +++FP   ED   R+  +G+++EEI  F       + +  +++I     +
Sbjct: 182 RGDFAVRGGILDVFPP-TEDHPLRLDFWGDEVEEIRWF------AVADQRSLEIAPGGLW 234

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
             P   L      +  E++ R +EL  +            +   ++MLE      ++E  
Sbjct: 235 APPCREL-----LLTPEVRARALELRAQ------------LPGAVDMLEKMSEGIAVEGM 277

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
                    G     + E +P+D+LL +
Sbjct: 278 ESLAPALVDGM--EQVLELVPDDALLVL 303


>gi|293553692|ref|ZP_06674316.1| transcription-repair coupling factor [Enterococcus faecium E1039]
 gi|291602267|gb|EFF32495.1| transcription-repair coupling factor [Enterococcus faecium E1039]
          Length = 1173

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 127/307 (41%), Gaps = 25/307 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G+ GS KT   A+  +   +  I++ PN   A QL  + ++  P + +  F     
Sbjct: 27  QLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHVIPQDQIHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYG-IGSVE 288
                      D  +  E + +    R    AT  +L E+   I +  V+ ++  + + +
Sbjct: 82  ---------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLPVASLHKRLPNKK 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           ++ Q  +   IGD ++ + L   L    Y R+++    G F + G  I+I+P        
Sbjct: 133 TWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSIIDIYPLTT-TYPV 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           RV +F  +I+ +  F   T + I   E I +   S  V     L   ++ +++ L+ RL 
Sbjct: 192 RVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIEQMQKMLEKRLA 251

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
              +E    + + L+          +     +  + YS  L      +   T+ +Y P +
Sbjct: 252 ATTEEA---DREFLQDYFGQLTSSWQAGVPTEEAKFYSDLLY-----QESVTILDYFPSN 303

Query: 469 SLLFVDE 475
           SLL VD+
Sbjct: 304 SLLVVDD 310


>gi|85858740|ref|YP_460942.1| transcription-repair coupling factor [Syntrophus aciditrophicus SB]
 gi|85721831|gb|ABC76774.1| transcription-repair coupling factor [Syntrophus aciditrophicus SB]
          Length = 1202

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 19/191 (9%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           GS   F +A + E + RP +V++P +  A + + +   F     V  +        P   
Sbjct: 37  GSANAFLIAALSEQLGRPLVVLSPTEKEARETFQDLSLFLGSGKVLLY--------PPWD 88

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
           +  TD +     ++   ++ +R      LL     ++V+S+  +  +  V   S +   L
Sbjct: 89  IQTTDMF-----ALQRDVELVRMEVLARLLTDEPAVIVASLKAL--MQKVVPRSILDAYL 141

Query: 298 KI---GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           +I   G  V + EL++ LV   Y+R  +   +G F + G  ++IFP  LED   R+   G
Sbjct: 142 EILAPGSEVPRDELVAKLVAGGYQRMTLVEDKGEFSLRGHVLDIFPP-LEDSPLRLEFDG 200

Query: 355 NDIEEISEFYP 365
           +D+E +  F P
Sbjct: 201 DDLESLRAFDP 211


>gi|69245443|ref|ZP_00603438.1| Transcription-repair coupling factor [Enterococcus faecium DO]
 gi|257879854|ref|ZP_05659507.1| transcription-repair coupling factor [Enterococcus faecium
           1,230,933]
 gi|257882580|ref|ZP_05662233.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,502]
 gi|257891695|ref|ZP_05671348.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,410]
 gi|257894170|ref|ZP_05673823.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,408]
 gi|258614282|ref|ZP_05712052.1| transcription-repair coupling factor [Enterococcus faecium DO]
 gi|260559527|ref|ZP_05831708.1| transcription-repair coupling factor [Enterococcus faecium C68]
 gi|261206678|ref|ZP_05921376.1| transcription-repair coupling factor [Enterococcus faecium TC 6]
 gi|289565039|ref|ZP_06445493.1| transcription-repair coupling factor [Enterococcus faecium D344SRF]
 gi|293563193|ref|ZP_06677649.1| transcription-repair coupling factor [Enterococcus faecium E1162]
 gi|293570115|ref|ZP_06681195.1| transcription-repair coupling factor [Enterococcus faecium E1071]
 gi|294614900|ref|ZP_06694791.1| transcription-repair coupling factor [Enterococcus faecium E1636]
 gi|294623704|ref|ZP_06702537.1| transcription-repair coupling factor [Enterococcus faecium U0317]
 gi|314938215|ref|ZP_07845515.1| transcription-repair coupling factor [Enterococcus faecium
           TX0133a04]
 gi|314943110|ref|ZP_07849909.1| transcription-repair coupling factor [Enterococcus faecium TX0133C]
 gi|314952240|ref|ZP_07855255.1| transcription-repair coupling factor [Enterococcus faecium TX0133A]
 gi|314992098|ref|ZP_07857548.1| transcription-repair coupling factor [Enterococcus faecium TX0133B]
 gi|314996281|ref|ZP_07861337.1| transcription-repair coupling factor [Enterococcus faecium
           TX0133a01]
 gi|68195825|gb|EAN10261.1| Transcription-repair coupling factor [Enterococcus faecium DO]
 gi|257814082|gb|EEV42840.1| transcription-repair coupling factor [Enterococcus faecium
           1,230,933]
 gi|257818238|gb|EEV45566.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,502]
 gi|257828055|gb|EEV54681.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,410]
 gi|257830549|gb|EEV57156.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,408]
 gi|260074626|gb|EEW62947.1| transcription-repair coupling factor [Enterococcus faecium C68]
 gi|260079171|gb|EEW66864.1| transcription-repair coupling factor [Enterococcus faecium TC 6]
 gi|289163246|gb|EFD11092.1| transcription-repair coupling factor [Enterococcus faecium D344SRF]
 gi|291587487|gb|EFF19371.1| transcription-repair coupling factor [Enterococcus faecium E1071]
 gi|291592186|gb|EFF23804.1| transcription-repair coupling factor [Enterococcus faecium E1636]
 gi|291596919|gb|EFF28137.1| transcription-repair coupling factor [Enterococcus faecium U0317]
 gi|291604843|gb|EFF34321.1| transcription-repair coupling factor [Enterococcus faecium E1162]
 gi|313589525|gb|EFR68370.1| transcription-repair coupling factor [Enterococcus faecium
           TX0133a01]
 gi|313593312|gb|EFR72157.1| transcription-repair coupling factor [Enterococcus faecium TX0133B]
 gi|313595635|gb|EFR74480.1| transcription-repair coupling factor [Enterococcus faecium TX0133A]
 gi|313598169|gb|EFR77014.1| transcription-repair coupling factor [Enterococcus faecium TX0133C]
 gi|313642411|gb|EFS06991.1| transcription-repair coupling factor [Enterococcus faecium
           TX0133a04]
          Length = 1173

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 127/307 (41%), Gaps = 25/307 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G+ GS KT   A+  +   +  I++ PN   A QL  + ++  P + +  F     
Sbjct: 27  QLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHVIPQDQIHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYG-IGSVE 288
                      D  +  E + +    R    AT  +L E+   I +  V+ ++  + + +
Sbjct: 82  ---------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLPVASLHKRLPNKK 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           ++ Q  +   IGD ++ + L   L    Y R+++    G F + G  I+I+P        
Sbjct: 133 TWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSIIDIYPLTT-TYPV 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           RV +F  +I+ +  F   T + I   E I +   S  V     L   ++ +++ L+ RL 
Sbjct: 192 RVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIEQMQKMLEKRLA 251

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
              +E    + + L+          +     +  + YS  L      +   T+ +Y P +
Sbjct: 252 ATTEEA---DREFLQDYFGQLTSSWQAGVPTEEAKFYSDLLY-----QESVTILDYFPSN 303

Query: 469 SLLFVDE 475
           SLL VD+
Sbjct: 304 SLLVVDD 310


>gi|224475645|ref|YP_002633251.1| putative transcription-repair coupling factor [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222420252|emb|CAL27066.1| putative transcription-repair coupling factor [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 1172

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 133/305 (43%), Gaps = 25/305 (8%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           L+ G++G+ K   MA+   +  RP +V+  N   A +L ++ + +   + +      Y Y
Sbjct: 28  LVTGLSGAVKATMMAEKYLSSDRPLVVVTNNLYQADKLEADIQQYINDDEI------YKY 81

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS-VESY 290
                  P  D   E+ S+ + Q+   R      L E      +  ++ +  + + V+ +
Sbjct: 82  -------PLQDIMTEEFSTQSPQLMSERVRTLTGLAEGQRGFFIIPLNGLKKLQTPVDIW 134

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
               ++L +GD ++  + L+ LV   Y+R+      G F + G  I+I+P  L     R+
Sbjct: 135 QSHQLKLSVGDDIDVDDFLNKLVDMGYRRETAVSHIGEFSLRGGIIDIYP--LIGAPVRI 192

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F  +++ I +F   + +   N ET++I + S Y+     L      +KE  +    ++
Sbjct: 193 ELFDTEVDSIRQFDIESQRSEENQETVEITSASDYIITDDVLKRIKTQLKEAYENTRPKI 252

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
           +K  R       E  + +D   ++     Q I     ++      E P TL +YI  +++
Sbjct: 253 DKSVRNDVKDTYESFLQFDSNFVD----HQVIRRLVTFMY-----EQPATLVDYISNNAI 303

Query: 471 LFVDE 475
           + VDE
Sbjct: 304 IAVDE 308


>gi|72160828|ref|YP_288485.1| transcription-repair coupling factor [Thermobifida fusca YX]
 gi|71914560|gb|AAZ54462.1| transcription-repair coupling factor [Thermobifida fusca YX]
          Length = 1210

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 16/175 (9%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RP + +   +  AA L S   +  P ++V  F ++ +    E   PR+DT  ++ + +  
Sbjct: 78  RPVLALTATEREAADLNSALGSLLPADSVALFPAW-ETLPHERLSPRSDTVGQRLAVLR- 135

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKEL 308
              R+ H      L     +VV+ +  +      G+G ++      V+++ GDSV   EL
Sbjct: 136 ---RLTHPDPDDPLTAPLRVVVAPIRSVLQPLVSGLGDLQP-----VRVREGDSVALDEL 187

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           + SLV   Y R D+   RG   V G  +++FP   E+   R+  +G+ +EEI  F
Sbjct: 188 VQSLVDIGYSRVDLVEKRGDIAVRGGILDVFPP-TEEHPLRLEFWGDTVEEIRYF 241


>gi|314949307|ref|ZP_07852650.1| transcription-repair coupling factor [Enterococcus faecium TX0082]
 gi|313644313|gb|EFS08893.1| transcription-repair coupling factor [Enterococcus faecium TX0082]
          Length = 1173

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 127/307 (41%), Gaps = 25/307 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G+ GS KT   A+  +   +  I++ PN   A QL  + ++  P + +  F     
Sbjct: 27  QLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHVIPQDQIHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYG-IGSVE 288
                      D  +  E + +    R    AT  +L E+   I +  V+ ++  + + +
Sbjct: 82  ---------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLPVASLHKRLPNKK 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           ++ Q  +   IGD ++ + L   L    Y R+++    G F + G  I+I+P        
Sbjct: 133 TWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSIIDIYPLTT-TYPV 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           RV +F  +I+ +  F   T + I   E I +   S  V     L   ++ +++ L+ RL 
Sbjct: 192 RVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIEQMQKMLEKRLA 251

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
              +E    + + L+          +     +  + YS  L      +   T+ +Y P +
Sbjct: 252 ATTEEA---DREFLQDYFGQLTSSWQAGVPTEEAKFYSDLLY-----QESVTILDYFPSN 303

Query: 469 SLLFVDE 475
           SLL VD+
Sbjct: 304 SLLVVDD 310


>gi|229816037|ref|ZP_04446358.1| hypothetical protein COLINT_03090 [Collinsella intestinalis DSM
           13280]
 gi|229808351|gb|EEP44132.1| hypothetical protein COLINT_03090 [Collinsella intestinalis DSM
           13280]
          Length = 1192

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 91/207 (43%), Gaps = 15/207 (7%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           L ++ SG+T  +A       RP + +   +  A +     ++   +  VE+   +     
Sbjct: 31  LAISQSGRTLAVAAQFARTPRPTVYIVSGEEAADRAA---RSLAAYVGVEHVARF----- 82

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQ 292
                P    Y  K +  ++ +   R +A   + +   CI+V+S  S +  +  +ES   
Sbjct: 83  -----PERKDYPWKSNEPDDAVVAARCAAMSRVAQGESCIMVASARSLLRCVPPLESRYW 137

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
                 +G+ +  +++ + LV   Y R D     G FRV GD++EI+ +       R+  
Sbjct: 138 QSTVFSVGEEIPFEQVPARLVGMGYTRADAADAPGLFRVQGDTVEIWAAQ-STAPVRIEF 196

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKI 379
           FG++I+ I      TGQ I + E+++I
Sbjct: 197 FGDEIDRIRLMVASTGQTIGDEESVEI 223


>gi|313621017|gb|EFR92140.1| transcription-repair coupling factor [Listeria innocua FSL S4-378]
          Length = 899

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 138/320 (43%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKSQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V+    Y          P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  ID---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    + +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSVWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +  +++++ + L EL KE    + Q L + +  DLEML    S    + + +Y+    P 
Sbjct: 240 VTRLEKKMTLTLNEL-KENE--DKQALVENLEEDLEMLR---SGVKPDMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +LF+Y+P+++ + +DE
Sbjct: 294 --PASLFDYLPKNTAILLDE 311


>gi|294618628|ref|ZP_06698167.1| transcription-repair coupling factor [Enterococcus faecium E1679]
 gi|291595147|gb|EFF26485.1| transcription-repair coupling factor [Enterococcus faecium E1679]
          Length = 1173

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 127/307 (41%), Gaps = 25/307 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G+ GS KT   A+  +   +  I++ PN   A QL  + ++  P + +  F     
Sbjct: 27  QLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHVIPQDQIHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYG-IGSVE 288
                      D  +  E + +    R    AT  +L E+   I +  V+ ++  + + +
Sbjct: 82  ---------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLPVASLHKRLPNKK 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           ++ Q  +   IGD ++ + L   L    Y R+++    G F + G  I+I+P        
Sbjct: 133 TWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSIIDIYPLTT-TYPV 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           RV +F  +I+ +  F   T + I   E I +   S  V     L   ++ +++ L+ RL 
Sbjct: 192 RVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIEQMQKMLEKRLA 251

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
              +E    + + L+          +     +  + YS  L      +   T+ +Y P +
Sbjct: 252 ATTEEA---DREFLQDYFGQLTSSWQAGVPTEEAKFYSDLLY-----QESVTILDYFPSN 303

Query: 469 SLLFVDE 475
           SLL VD+
Sbjct: 304 SLLVVDD 310


>gi|269219241|ref|ZP_06163095.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211388|gb|EEZ77728.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 1194

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 98/222 (44%), Gaps = 30/222 (13%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA--PNKILA 206
           P G  P  +A L+ G H         G  GS    + A+       P +V+A  P    A
Sbjct: 32  PRGLVPPVLA-LMGGAHGPGDAHAPEGPHGSNAARSHAE-------PPLVVAVTPTGREA 83

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266
            +L    + + P   VE F ++ +    E   PR+DT   +   I  Q  R+ H    + 
Sbjct: 84  DELVGALRAYLPEETVELFPAW-ETLPHERLSPRSDTVARR---ILAQ-RRLAHPEDFAP 138

Query: 267 LERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           L     ++V  V  +      G+G ++      V++++GD V+ + L  +LV   Y R D
Sbjct: 139 LR----VLVMPVRALLQPIAEGLGELKP-----VRVRMGDVVDLESLERALVDAAYSRVD 189

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           +   RG F V G  I+IFP   +    R+ +FG+D+EEI  F
Sbjct: 190 MVEGRGQFAVRGGLIDIFPP-TDPRPSRIELFGDDVEEIRVF 230


>gi|328467970|gb|EGF38997.1| transcription-repair coupling factor [Listeria monocytogenes 1816]
          Length = 1179

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 137/320 (42%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V+    Y          P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    + +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++   L EL KE    + Q L + +  DLEML    S    + + +Y+    P 
Sbjct: 240 VKRLEKKMTHTLNEL-KENE--DKQALVENLEEDLEMLR---SGVKPDMFFKYIGLAYP- 292

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +LF+Y P+++ + +DE
Sbjct: 293 -DPASLFDYFPKNTAILLDE 311



 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H ++   E   +I     G+FDVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 859 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917

Query: 666 RSKTSLIQTIGRAAR 680
              + L Q  GR  R
Sbjct: 918 ---SQLYQLRGRVGR 929


>gi|255520464|ref|ZP_05387701.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J1-175]
          Length = 1179

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 137/320 (42%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V+    Y          P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    + +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++   L EL KE    + Q L + +  DLEML    S    + + +Y+    P 
Sbjct: 240 VKRLEKKMTHTLNEL-KENE--DKQALVENLEEDLEMLR---SGVKPDMFFKYIGLAYP- 292

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +LF+Y P+++ + +DE
Sbjct: 293 -DPASLFDYFPKNTAILLDE 311



 Score = 40.8 bits (94), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H ++   E   +I     G+FDVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 859 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917

Query: 666 RSKTSLIQTIGRAAR 680
              + L Q  GR  R
Sbjct: 918 ---SQLYQLRGRVGR 929


>gi|297582393|ref|YP_003698173.1| transcription-repair coupling factor [Bacillus selenitireducens
           MLS10]
 gi|297140850|gb|ADH97607.1| transcription-repair coupling factor [Bacillus selenitireducens
           MLS10]
          Length = 1186

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 142/325 (43%), Gaps = 33/325 (10%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + +++KGI      Q L+G++GS +   +A +     +  +++  N   A +LY +    
Sbjct: 14  LEKVIKGIEDGAGDQSLVGISGSARAMHLAALFRRTGKSQLIVTHNLFQAQKLYDDLITV 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + V  +        P   +  ++  +       ++++ M   +T +       IV++
Sbjct: 74  LNTDDVLLY--------PANELISSEIAVASPEMRGQRLEVMNEWSTGA-----KRIVIA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  + S  + + +  +   +G+ V+    L   V   Y R D+    G F V G  
Sbjct: 121 PVAGVRRLLSPPDLWQEQRLTFTVGEDVDFDRTLGQFVNMGYSRADMVSAPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT---L 392
           I+++P   E+   R+ +F  +++ I  F         +VET +       V   P    +
Sbjct: 181 IDVYPL-TEEYPVRIELFDTEVDSIRLF---------DVETQRSVDERSTVVAGPAREII 230

Query: 393 NTAMKYIK--EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
              ++YI+  E L  +L +  K  RL + Q  E  I    E +E+  + Q  +   +Y+T
Sbjct: 231 VQDVQYIRAAERLDEQLAKSLK--RLKDDQIKETMINNVGEEIESLKNRQFFDAIYKYMT 288

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDE 475
                E P TLF+Y+P+D+L+ +DE
Sbjct: 289 LLY--ERPATLFDYMPDDTLVVLDE 311


>gi|4090863|gb|AAC98900.1| transcription-repair coupling factor [Listeria monocytogenes]
          Length = 1190

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 137/320 (42%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 25  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 84

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V+    Y          P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 85  MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 131

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    + +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 132 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 191

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 192 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 250

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++   L EL KE    + Q L + +  DLEML    S    + + +Y+    P 
Sbjct: 251 VKRLEKKMTHTLNEL-KENE--DKQALVENLEEDLEMLR---SGVKPDMFFKYIGLAYPD 304

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +LF+Y P+++ + +DE
Sbjct: 305 --PASLFDYFPKNTAILLDE 322



 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H ++   E   +I     G+FDVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 870 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 928

Query: 666 RSKTSLIQTIGRAAR 680
              + L Q  GR  R
Sbjct: 929 ---SQLYQLRGRVGR 940


>gi|46906446|ref|YP_012835.1| transcription-repair coupling factor [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|226222843|ref|YP_002756950.1| transcription-repair coupling factor [Listeria monocytogenes
           Clip81459]
 gi|254825872|ref|ZP_05230873.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J1-194]
 gi|254854444|ref|ZP_05243792.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           R2-503]
 gi|254933054|ref|ZP_05266413.1| transcription-repair coupling factor [Listeria monocytogenes
           HPB2262]
 gi|300766347|ref|ZP_07076306.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           N1-017]
 gi|46879710|gb|AAT03012.1| transcription-repair coupling factor [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|225875305|emb|CAS04002.1| transcription-repair coupling factor [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258607844|gb|EEW20452.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           R2-503]
 gi|293584612|gb|EFF96644.1| transcription-repair coupling factor [Listeria monocytogenes
           HPB2262]
 gi|293595111|gb|EFG02872.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J1-194]
 gi|300512946|gb|EFK40034.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           N1-017]
 gi|332310623|gb|EGJ23718.1| Transcription-repair-coupling factor [Listeria monocytogenes str.
           Scott A]
          Length = 1179

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 137/320 (42%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V+    Y          P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    + +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++   L EL KE    + Q L + +  DLEML    S    + + +Y+    P 
Sbjct: 240 VKRLEKKMTHTLNEL-KENE--DKQALVENLEEDLEMLR---SGVKPDMFFKYIGLAYP- 292

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +LF+Y P+++ + +DE
Sbjct: 293 -DPASLFDYFPKNTAILLDE 311



 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H ++   E   +I     G+FDVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 859 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917

Query: 666 RSKTSLIQTIGRAAR 680
              + L Q  GR  R
Sbjct: 918 ---SQLYQLRGRVGR 929


>gi|47093156|ref|ZP_00230931.1| transcription-repair coupling factor [Listeria monocytogenes str.
           4b H7858]
 gi|47018463|gb|EAL09221.1| transcription-repair coupling factor [Listeria monocytogenes str.
           4b H7858]
          Length = 1179

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 137/320 (42%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V+    Y          P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    + +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++   L EL KE    + Q L + +  DLEML    S    + + +Y+    P 
Sbjct: 240 VKRLEKKMTHTLNEL-KENE--DKQALVENLEEDLEMLR---SGVKPDMFFKYIGLAYP- 292

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +LF+Y P+++ + +DE
Sbjct: 293 -DPASLFDYFPKNTAILLDE 311



 Score = 40.8 bits (94), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H ++   E   +I     G+FDVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 859 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917

Query: 666 RSKTSLIQTIGRAAR 680
              + L Q  GR  R
Sbjct: 918 ---SQLYQLRGRVGR 929


>gi|229131061|ref|ZP_04259974.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST196]
 gi|229165042|ref|ZP_04292838.1| Transcription-repair-coupling factor [Bacillus cereus AH621]
 gi|228618427|gb|EEK75456.1| Transcription-repair-coupling factor [Bacillus cereus AH621]
 gi|228652398|gb|EEL08322.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST196]
          Length = 1176

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/320 (19%), Positives = 146/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKQSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEVGVASPELKAQRIEVLNRLAAGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGDFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F   ++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTQVDSIRLFDVEEQRSQDKRESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K+++E L   + +L  +   L+   LE  ++++LEML+   + QSIE   +YL+     
Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHELEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PE+ ++ +DE
Sbjct: 292 KEPASLIDYLPENGVVILDE 311



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|297521247|ref|ZP_06939633.1| excinuclease ABC subunit B [Escherichia coli OP50]
          Length = 116

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 12/111 (10%)

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN-------- 745
           T S+  AI ET RRREKQ ++N++H I PQ + +K+++++   L ++ A T         
Sbjct: 1   TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQNIAKTKAKGRGKSR 58

Query: 746 --ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++ +L+
Sbjct: 59  PIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 109


>gi|197116614|ref|YP_002137041.1| transcription-repair coupling factor [Geobacter bemidjiensis Bem]
 gi|197085974|gb|ACH37245.1| transcription-repair coupling factor [Geobacter bemidjiensis Bem]
          Length = 1157

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 107/235 (45%), Gaps = 18/235 (7%)

Query: 157 IAQLLKGIHSR---EKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           + + LK I  +   EK +L L GV GS   + +++++     P +V+  ++  A +L  E
Sbjct: 5   VPEYLKSIKEKLAPEKSRLSLAGVDGSAPAYLLSRLMTESGPPLVVITSDQESADELARE 64

Query: 213 FKNF-FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
            + F   HNAV  F  + D    EA  P  D   E+ +++     R+     R+      
Sbjct: 65  LRFFSCSHNAVLPFPGW-DVTPFEAASPHPDLVGERLNALL----RLMDGGARA------ 113

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +VV   + +  +   E+   +   L  G+ +E++ L+  LVK  Y    I   RG+F V
Sbjct: 114 -VVVPLAAALQRVIPRETLGGVCQYLVAGEELERETLVEKLVKLGYSHVPIVEDRGSFSV 172

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
            G  ++IFP   E    R+  FG+ +E +  F P T + +  ++ + +  +   +
Sbjct: 173 RGGILDIFPPDQER-PVRIEFFGDLVETMRLFDPATQRSLEPLDELVLLPSREVI 226


>gi|227552670|ref|ZP_03982719.1| transcription-repair coupling factor [Enterococcus faecium TX1330]
 gi|257897406|ref|ZP_05677059.1| transcription-repair coupling factor [Enterococcus faecium Com12]
 gi|293378835|ref|ZP_06624990.1| transcription-repair coupling factor [Enterococcus faecium PC4.1]
 gi|227178199|gb|EEI59171.1| transcription-repair coupling factor [Enterococcus faecium TX1330]
 gi|257833971|gb|EEV60392.1| transcription-repair coupling factor [Enterococcus faecium Com12]
 gi|292642376|gb|EFF60531.1| transcription-repair coupling factor [Enterococcus faecium PC4.1]
          Length = 1173

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 129/309 (41%), Gaps = 29/309 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G+ GS KT   A+  +   +  I++ PN   A QL  + ++  P + +  F     
Sbjct: 27  QLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHVIPQDQIHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYG-IGSVE 288
                      D  +  E + +    R    AT  +L E+   I +  V+ ++  + + +
Sbjct: 82  ---------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLPVAALHKRLPNKK 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           ++ Q  +   +GD ++ + L   L    Y R+++    G F + G  ++I+P    +   
Sbjct: 133 TWLQAQLNWHVGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSIVDIYPL-TTNYPI 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           RV +F  +I+ +  F   T + I   E I +   S  V     L   ++ +++ L+ RL 
Sbjct: 192 RVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIEQMQKMLEKRLA 251

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN--YSRYLTGRNPGEPPPTLFEYIP 466
              +E      Q    ++T   ++   T   +   +  Y  ++          T+ +Y P
Sbjct: 252 ATTEEADREFLQDYFGQMTSSWQVGIPTEEAKFYSDLLYQEFV----------TILDYFP 301

Query: 467 EDSLLFVDE 475
            +SLL VD+
Sbjct: 302 SNSLLVVDD 310


>gi|257871350|ref|ZP_05651003.1| transcription-repair coupling factor [Enterococcus gallinarum EG2]
 gi|257805514|gb|EEV34336.1| transcription-repair coupling factor [Enterococcus gallinarum EG2]
          Length = 1173

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 131/331 (39%), Gaps = 42/331 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q AA  Q L    SR   QLL G+ GS KT   A   +   R  IV+ PN     Q+  +
Sbjct: 12  QVAAWHQQLTDHASR---QLLTGLAGSAKTLAFAGAYQKFDRQVIVVTPNLYYTNQVAED 68

Query: 213 FKNF------FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266
            +N       FP +  E   +   +  PEA   R  T +   ++  + I  M  +A R  
Sbjct: 69  LRNIIDDVYVFPVD--EVLSAEMAFASPEARAERV-TALNAVATGKKGIYVMPIAALRKY 125

Query: 267 LERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
           L   D  +    S                   +GD +   +L   LV   Y+RQ +    
Sbjct: 126 LPAKDTWLNYQFSW-----------------HVGDEINLDQLPQQLVLMGYERQSMIGKP 168

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           G F + G  ++I+P   E    R+ +F  +I+ +  F   T + +  +  + I   +  V
Sbjct: 169 GEFSIRGSILDIYPLKAE-YPVRIELFDVEIDSMRSFDVETQRSVETLSEVTIVPTTELV 227

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEK--EGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
                L    K ++E LK RL  +++  +   LE         Y  ++     S    EN
Sbjct: 228 FSPADLAHGQKVLQELLKKRLAVVKETTDKNFLE--------DYFGQLASAWQSGIPDEN 279

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
            +RY       + P ++ +Y  +D+LL +D+
Sbjct: 280 -ARYYADL-LYQQPTSILDYFSKDALLMIDD 308



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++DVLV   ++  G+DIP    + + +AD  G  
Sbjct: 854 DARIGYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENADYMGL- 912

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 913 ---STLYQLRGRVGRS 925


>gi|218777910|ref|YP_002429228.1| transcription-repair coupling factor [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759294|gb|ACL01760.1| transcription-repair coupling factor [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1179

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 105/473 (22%), Positives = 189/473 (39%), Gaps = 53/473 (11%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P+ +   A AQ L      +     LG+  S + + +A++    +R  +V+AP K  A  
Sbjct: 4   PNPNAVKAAAQYLALTRESQGPVECLGLERSSQAYFIAQLFREKKRTVLVLAPTKKEAKT 63

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE---------KESSINEQIDRMR 259
           L ++   F             D  QPE+ +P     +E         K  S + +    R
Sbjct: 64  LCADLDFFL-----------QDLKQPESALPGQGWILEFPAYHILPFKGISYHTETAANR 112

Query: 260 HSATRSLLERND-CIVVSS----VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
            SA   +    D  IVV++     S +    ++ S+ ++I+    G+ +++   +  LV 
Sbjct: 113 ISALSRMANSPDPAIVVTTPQAMASRLIPKSALNSFGELIMA---GEELDRDAFVEKLVS 169

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             Y +  I    G F V G  ++++ P + + +  R+  FG++++ I  F P T + I+ 
Sbjct: 170 GGYVKNLIVEEPGDFCVRGSIVDVYGPPYSQPL--RIEFFGDEVDSIRFFSPSTQRTIKK 227

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           +E   I   +  V  +  L + +  ++E+  +  + + K             I   ++ L
Sbjct: 228 MEEAVILPATEAVVSKDRLQSVIHRVREKAVLADMPVTK-------------IREVVDSL 274

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           + T     IE +   L   N G+   +LF+Y+P D+L  V +  V   Q    Y  D   
Sbjct: 275 KATQQFPGIEGFVPLLY-ENGGD---SLFDYLPADTLCTVLDP-VAASQEYEKYLEDVEE 329

Query: 494 KATLAEYGFRL--PSCMDNRPLR--FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
               A+   RL  P  M + P     +  N  RP T    A  G  E E  +  +   + 
Sbjct: 330 NFETAQAENRLSIPPAMTHLPAEDFRKRLNRARPLTFPTLAVTGPQEEEAGKARMQLHVE 389

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
             T LV      +     ++ + D +N    QG  I++   +K  AE L   L
Sbjct: 390 TNTELVQNLKASKERDQLLKPLADWVNDKRDQGYSIVMACGSKMQAERLESLL 442


>gi|268318293|ref|YP_003292012.1| transcription-repair coupling factor [Rhodothermus marinus DSM
           4252]
 gi|262335827|gb|ACY49624.1| transcription-repair coupling factor [Rhodothermus marinus DSM
           4252]
          Length = 1112

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 110/253 (43%), Gaps = 26/253 (10%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF--PHNAVEYFVSYYD 230
           L G+ GS   F + ++   ++RP + + P++  AA L+S+ +         + +  +   
Sbjct: 34  LRGLAGSLPAFVLYELSRHLRRPVLCLTPDEEQAAYLFSDLEQLLGVSDRLLRFPATGQK 93

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
            Y PE  +P +   IE            R    R L E  D ++++S   I   +   + 
Sbjct: 94  PYDPEQ-IPDSAPLIE------------RTDVLRRLAEGFDGLLLASAEAIAERVPPPDR 140

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP---SHLEDV 346
             Q  + L  G  ++  +LL+ L+ + ++R +     G   + G  ++++P   +H    
Sbjct: 141 VRQETLVLSPGMVIDPAQLLAHLIARGFERVEFVEAPGEVALRGGILDVYPFTGTH---- 196

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             RV  FG++I+ I EF P T + I  + + +I  N          +T  +++ +   + 
Sbjct: 197 PIRVEFFGDEIDTIREFDPRTQRSISRLTSAQIVPNLSAADSEEAAHTLFEHLPDHALLV 256

Query: 407 LIELEKEGRLLEA 419
           L E   EG L +A
Sbjct: 257 LFE---EGALFDA 266



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+   H ++K  E   ++ D    K+DVLV  N++  GLDIP    + I  A++ G  
Sbjct: 790 DVRIAVAHGQMKPRELERVMHDFMARKYDVLVSTNIIESGLDIPNANTIIINHAEQFGL- 848

Query: 666 RSKTSLIQTIGRAARNVNSKVILY 689
                L Q  GR  R+ + K   Y
Sbjct: 849 ---ADLHQLRGRVGRS-DRKAFCY 868


>gi|253580889|ref|ZP_04858151.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847731|gb|EES75699.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1107

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 94/192 (48%), Gaps = 6/192 (3%)

Query: 229 YDYYQPEAY-VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGS 286
           Y +Y  + Y  P  D    +       + R R    ++LLE  +  VV+S+  C+  + S
Sbjct: 71  YRFYDRKVYSYPAKDLLFFQADIHGNLLIRQRMKVIKALLEEKELTVVTSIDGCMDFLES 130

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           +E   + ++  +   +V+ ++L + LV   Y+R     + G F V G  ++I+    E+ 
Sbjct: 131 LEKIKEQLIHYESDSTVDIEQLKNQLVALGYERVGQVEMPGQFSVRGGIVDIY-CLTEEN 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            WR+ ++G++I+ I  F P + + + N+E + IY    ++  +  + + + Y  EE    
Sbjct: 190 PWRIELWGDEIDSIRSFDPESQRSLENLEELTIYPAVEHIGDKDMV-SFLDYFPEE--RT 246

Query: 407 LIELEKEGRLLE 418
           +I L++  RL E
Sbjct: 247 IIFLDEPNRLTE 258


>gi|293571071|ref|ZP_06682112.1| transcription-repair coupling factor [Enterococcus faecium E980]
 gi|291608854|gb|EFF38135.1| transcription-repair coupling factor [Enterococcus faecium E980]
          Length = 1173

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 128/307 (41%), Gaps = 25/307 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G+ GS KT   A+  +   +  I++ PN   A QL  + ++  P + +  F     
Sbjct: 27  QLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHVIPQDQIHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYG-IGSVE 288
                      D  +  E + +    R    AT  +L E+   I +  V+ ++  + + +
Sbjct: 82  ---------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLPVAALHKRLPNKK 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           ++ Q  +   +GD ++ + L   L    Y R+++    G F + G  ++I+P    +   
Sbjct: 133 TWLQAQLNWHVGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSIVDIYPL-TTNYPI 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           RV +F  +I+ +  F   T + I   E I +   S  V     L   ++ +++ L+ RL 
Sbjct: 192 RVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIEQMQKMLEKRLA 251

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
              +E    + + L+          +     +  + YS  L      +   T+ +Y P +
Sbjct: 252 ATTEEA---DREFLQDYFGQMTSSWQAGIPTEEAKFYSDLLY-----QEFVTILDYFPSN 303

Query: 469 SLLFVDE 475
           SLL VD+
Sbjct: 304 SLLVVDD 310


>gi|166714792|gb|ABY88108.1| UvrB [Stenotrophomonas sp. ICB207]
          Length = 61

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%)

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
           I+IFP+  +D+  RV +F  ++E +S F PLTGQ I  +    IY  +HYVTPR
Sbjct: 2   IDIFPAESDDIGLRVELFDEEVERLSLFDPLTGQVISVIPRFTIYPKTHYVTPR 55


>gi|118587141|ref|ZP_01544570.1| transcription-repair coupling factor [Oenococcus oeni ATCC
           BAA-1163]
 gi|118432420|gb|EAV39157.1| transcription-repair coupling factor [Oenococcus oeni ATCC
           BAA-1163]
          Length = 1189

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 101/221 (45%), Gaps = 13/221 (5%)

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           D  R  A R+LL + + IVV  +S +       E + Q ++  KI +S  Q++L   L++
Sbjct: 107 DLSRVLALRALLSKENSIVVVPLSGLSRRYPDPEFFQQAVLDFKIANSYPQEQLAKKLIE 166

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y +Q +    G F V G+ ++I+P +  D   R+  F +++E +  F   + + +  +
Sbjct: 167 MGYNKQTLVANPGEFSVRGEIVDIYPINF-DEPIRLDFFDDELESMRTFDADSQKSLNKI 225

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           +   +   S ++ PR   +  +K    +L+   ++   + +  E ++L +     LE  +
Sbjct: 226 KQASVSPVSDFLLPRAEFSDGLK----QLEQAFVDYRNKLKGAEKKKLTEFFNPLLEAAK 281

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                  +  +S +           ++FEY+  + L+ +D+
Sbjct: 282 HFSYGHELLPFSEFFLKH-------SIFEYLQSEDLILIDD 315


>gi|150388007|ref|YP_001318056.1| transcription-repair coupling factor [Alkaliphilus metalliredigens
           QYMF]
 gi|149947869|gb|ABR46397.1| transcription-repair coupling factor [Alkaliphilus metalliredigens
           QYMF]
          Length = 1174

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 104/218 (47%), Gaps = 12/218 (5%)

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           Y +  +  K+G+S++ +++  + VKQ Y+R +     G F + G  I+I+ S  E   +R
Sbjct: 136 YKKDQISFKVGESIDLEKVTETFVKQGYERVEQVEGNGQFSIRGGIIDIY-SGGEISPYR 194

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           + +F ++++ I +F   T +  + V+ + IY  +  +     + + ++ I+ E       
Sbjct: 195 IELFDDEVDSIRQFQVDTQRSTQKVQELLIYPVAETIIEPSAVESVIQAIEAEGAA---- 250

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
           L K+ +    +RL +++          G    +E Y+ YL      E   +L +Y+  ++
Sbjct: 251 LSKKLKGGPKERLAEKVAEVSNKFREFGHFNGVEQYAPYLY-----EQEASLLDYLNPNA 305

Query: 470 LLFVDESHVTIPQISGMYRGDFHRK-ATLAEYGFRLPS 506
           L+ +DE      ++ G Y G+F     TL E G  LP+
Sbjct: 306 LVIIDEPQRCKERVRG-YEGEFKENFKTLLERGEVLPT 342



 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 21/114 (18%)

Query: 585 ILLTVLTKRMAED-LTEYLYER----------------NIRVRYMHSEVKTLERIEIIRD 627
           +++  +TK MA    T Y+Y R                  RV   H ++   E   ++ D
Sbjct: 822 MIIDAITKEMARGGQTYYVYNRVDGIHQVARKLQELIPEARVAVGHGQMGERELEMLMMD 881

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
              G +DVLV   ++  GLDI     + I DADK G     + L Q  GR  R+
Sbjct: 882 YLDGVYDVLVCTTIIETGLDISNVNTIMIHDADKLGL----SQLYQLRGRVGRS 931


>gi|257888639|ref|ZP_05668292.1| transcription-repair coupling factor [Enterococcus faecium
           1,141,733]
 gi|257824693|gb|EEV51625.1| transcription-repair coupling factor [Enterococcus faecium
           1,141,733]
          Length = 1173

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 128/307 (41%), Gaps = 25/307 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G+ GS KT   A+  +   +  I++ PN   A QL  + ++  P + +  F     
Sbjct: 27  QLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHVIPQDQIHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYG-IGSVE 288
                      D  +  E + +    R    AT  +L E+   I +  V+ ++  + + +
Sbjct: 82  ---------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLPVAALHKRLPNKK 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           ++ Q  +   +GD ++ + L   L    Y R+++    G F + G  ++I+P    +   
Sbjct: 133 TWLQAQLNWHVGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSIVDIYPL-TTNYPI 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           RV +F  +I+ +  F   T + I   E I +   S  V     L   ++ +++ L+ RL 
Sbjct: 192 RVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIEQMQKMLEKRLA 251

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
              +E    + + L+          +     +  + YS  L      +   T+ +Y P +
Sbjct: 252 ATTEEA---DREFLQDYFGQMTSSWQAGIPTEEAKFYSDLLY-----QEFVTILDYFPSN 303

Query: 469 SLLFVDE 475
           SLL VD+
Sbjct: 304 SLLVVDD 310


>gi|257899966|ref|ZP_05679619.1| transcription-repair coupling factor [Enterococcus faecium Com15]
 gi|257837878|gb|EEV62952.1| transcription-repair coupling factor [Enterococcus faecium Com15]
          Length = 1173

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 128/307 (41%), Gaps = 25/307 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G+ GS KT   A+  +   +  I++ PN   A QL  + ++  P + +  F     
Sbjct: 27  QLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHVIPQDQIHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYG-IGSVE 288
                      D  +  E + +    R    AT  +L E+   I +  V+ ++  + + +
Sbjct: 82  ---------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLLPVAALHKRLPNKK 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           ++ Q  +   +GD ++ + L   L    Y R+++    G F + G  ++I+P    +   
Sbjct: 133 TWLQAQLNWHVGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSIVDIYPL-TTNYPI 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           RV +F  +I+ +  F   T + I   E I +   S  V     L   ++ +++ L+ RL 
Sbjct: 192 RVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHGIEQMQKMLEKRLA 251

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
              +E    + + L+          +     +  + YS  L      +   T+ +Y P +
Sbjct: 252 ATTEEA---DREFLQDYFGQMTSSWQAGIPTEEAKFYSDLLY-----QEFVTILDYFPSN 303

Query: 469 SLLFVDE 475
           SLL VD+
Sbjct: 304 SLLVVDD 310


>gi|52078550|ref|YP_077341.1| transcription-repair coupling factor [Bacillus licheniformis ATCC
           14580]
 gi|52783912|ref|YP_089741.1| hypothetical protein BLi00068 [Bacillus licheniformis ATCC 14580]
 gi|52001761|gb|AAU21703.1| transcription-repair coupling factor [Bacillus licheniformis ATCC
           14580]
 gi|52346414|gb|AAU39048.1| Mfd [Bacillus licheniformis ATCC 14580]
          Length = 1177

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 134/326 (41%), Gaps = 41/326 (12%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           ++ G++   K QLL G++GS ++   A + +  +RP  ++  N   A ++  +       
Sbjct: 17  IVNGLNEGLKEQLLAGLSGSARSLFTAALTKETRRPVFLITHNLYQAQKITDDLTGLIKD 76

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
                        QP    P  +    + +  + ++   R      L      IVV+  +
Sbjct: 77  -------------QPVLLYPVNELISSEIAVASPELRSQRLDVLNRLASGETPIVVAPAA 123

Query: 280 CIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
            +   +  VE +    + ++ G  ++ ++LL  LV+  Y+R D+    G F + G  I++
Sbjct: 124 AVRRMLPPVEVWQNSQIHIETGRDIDTEQLLQKLVQMGYERTDMVAAPGEFSIRGGIIDV 183

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           + S  E+   R+ +F  +++ I         +I N +  +       VT  P        
Sbjct: 184 Y-SLTEENPVRIELFDTEVDSI---------RIFNTDDQRSLETRDEVTIGPAKELI--- 230

Query: 399 IKEELKMRLIELEKEG---------RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
           +++E + R +E   +G            + + L+Q I  D E L+     Q +  Y  Y 
Sbjct: 231 VRDEDRQRALEQIDQGLANSLKKLKLDKQKEILDQNIAEDKERLKEGHIGQEMVKYLSYF 290

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDE 475
                 E P +L +Y P+++LL +DE
Sbjct: 291 Y-----EKPASLLDYFPKNTLLILDE 311



 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V Y H ++   E   ++ +   G+ DVLV   ++  G+DIP    + + DADK G  
Sbjct: 858 DAKVTYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|312869845|ref|ZP_07729986.1| transcription-repair coupling factor [Lactobacillus oris
           PB013-T2-3]
 gi|311094624|gb|EFQ52927.1| transcription-repair coupling factor [Lactobacillus oris
           PB013-T2-3]
          Length = 1178

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 102/221 (46%), Gaps = 15/221 (6%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K QL+ G++GS +T  +A ++E  Q+P + +  +     +L  +  N    N V      
Sbjct: 24  KRQLVTGISGSARTMLLAGMVEQSQQPVLAVVDSLTQLEELADDLSNLLGANQV------ 77

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
           Y +   E       T     SS N ++ R++  A  +L  +   IVV+SV+ +   + + 
Sbjct: 78  YQFPVEEVLAAEVAT-----SSPNYRLQRVQ--ALNALNSQRPVIVVASVAGLRRNVVAP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             ++Q  +++ +G  ++ +     L    Y+ Q + +  G F + G  I+++  +  D  
Sbjct: 131 AFFAQATLKVTVGGELDPERARQQLSAMGYQLQKMVLRPGDFAIRGSIIDVYALN-TDNP 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
            R+ +F  +++ +  F   T + + NVE ++I   +  + P
Sbjct: 190 VRIDLFDTEVDSLRYFDASTQKSVGNVEEVEILPATDLILP 230


>gi|328956088|ref|YP_004373421.1| transcription-repair coupling factor [Coriobacterium glomerans PW2]
 gi|328456412|gb|AEB07606.1| transcription-repair coupling factor [Coriobacterium glomerans PW2]
          Length = 1187

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 3/116 (2%)

Query: 267 LERNDC--IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           + R D   +V S+ S +  +   ES      +  +GD    +++ + LV   Y R     
Sbjct: 110 MARGDAAIMVASARSLLRCVPEPESRYWEEKRFAVGDQFPFEQVPTLLVGMGYARAGAAD 169

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           + GTFRV GD+++IFP+       R+  FG++I+ I     LTGQ I  V+ + I+
Sbjct: 170 VAGTFRVHGDAVDIFPAQ-SGSPVRIEFFGDEIDRIRLMVALTGQTIGEVQEVSIF 224


>gi|229067818|ref|ZP_04201136.1| Transcription-repair-coupling factor [Bacillus cereus F65185]
 gi|228715302|gb|EEL67160.1| Transcription-repair-coupling factor [Bacillus cereus F65185]
          Length = 1176

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/320 (19%), Positives = 146/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  M  + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLISGMATSSRSLLMTALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E ++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKENVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +++++E L   + +L  +   L+ + LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IQHLEEGLTKTMQKLSDDK--LKTKVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PED ++ +DE
Sbjct: 292 KEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|256833153|ref|YP_003161880.1| transcription-repair coupling factor [Jonesia denitrificans DSM
           20603]
 gi|256686684|gb|ACV09577.1| transcription-repair coupling factor [Jonesia denitrificans DSM
           20603]
          Length = 1216

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 15/173 (8%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+      A +L    + + P +AV    ++ +    E   PR+DT   + +     
Sbjct: 61  PIVVVTATGREADELAQALRCYVPTDAVATLPAW-ETLPHERLSPRSDTVARRLAVFR-- 117

Query: 255 IDRMRHSATRSLLERNDCIVVSSVS----CIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
             R+ H +   +    D + V   +     + G+G +       V+L++GDSV+  ++  
Sbjct: 118 --RLAHPSAEGVTGDIDVLTVPVRALLQPVVQGLGDLTP-----VRLQVGDSVDLTDVAH 170

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            L    Y R D+   RG F V G  +++FP H E    RV  FG+++++I+ F
Sbjct: 171 QLADAAYARVDMVERRGEFAVRGGILDVFPPH-EAHPLRVDFFGDEVDDITYF 222


>gi|142843|gb|AAA22389.1| unknown [Bacillus subtilis]
          Length = 57

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 37/50 (74%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           F++ + Y P GDQP AI +L+KGI   +K Q LLG TG+GKTFT++ +I+
Sbjct: 5   FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIK 54


>gi|229053900|ref|ZP_04195335.1| Transcription-repair-coupling factor [Bacillus cereus AH603]
 gi|228721441|gb|EEL72961.1| Transcription-repair-coupling factor [Bacillus cereus AH603]
          Length = 1176

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/320 (19%), Positives = 147/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKQSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEVGVASPELKAQRIEVLNRLAAGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K+++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PE+ ++ +DE
Sbjct: 292 KEPASLIDYLPENGVVILDE 311



 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|297205117|ref|ZP_06922513.1| transcription-repair coupling factor [Lactobacillus jensenii
           JV-V16]
 gi|297149695|gb|EFH29992.1| transcription-repair coupling factor [Lactobacillus jensenii
           JV-V16]
          Length = 1162

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 15/212 (7%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++  N+  A +L        P   V+YF            V  T       +S +E   
Sbjct: 52  LIIEENENKAQRLVDNLAPLLPEEKVQYFA-----------VDSTLATQRATASPDELAQ 100

Query: 257 RMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           R++  A   LL   + IVV++   + Y + S +SY++    +K+G   + K++ S LV  
Sbjct: 101 RIK--ALHLLLSEENGIVVTTAQGLEYQLNSKDSYTKSNKLIKVGQEYDLKQMNSWLVAS 158

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y+++ +    G F V GD ++I+P   + +  R+  FG++++ +  F   T + I   +
Sbjct: 159 GYRKEALVAKPGEFAVRGDILDIYPLD-QALPVRIEFFGDEVDTVKSFDVNTQKSISEKD 217

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            I +   S  +     L  A   IK+E+K  L
Sbjct: 218 QINVLPASDRIFESANLKKAHNLIKDEIKESL 249


>gi|256852011|ref|ZP_05557398.1| transcription-repair coupling factor [Lactobacillus jensenii
           27-2-CHN]
 gi|260661420|ref|ZP_05862333.1| transcription-repair coupling factor [Lactobacillus jensenii
           115-3-CHN]
 gi|282933683|ref|ZP_06339041.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1]
 gi|256615423|gb|EEU20613.1| transcription-repair coupling factor [Lactobacillus jensenii
           27-2-CHN]
 gi|260547875|gb|EEX23852.1| transcription-repair coupling factor [Lactobacillus jensenii
           115-3-CHN]
 gi|281302173|gb|EFA94417.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1]
          Length = 1162

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 15/212 (7%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++  N+  A +L        P   V+YF            V  T       +S +E   
Sbjct: 52  LIIEENENKAQRLVDNLAPLLPEEKVQYFA-----------VDSTLATQRATASPDELAQ 100

Query: 257 RMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           R++  A   LL   + IVV++   + Y + S +SY++    +K+G   + K++ S LV  
Sbjct: 101 RIK--ALHLLLSEENGIVVTTAQGLEYQLNSKDSYTKSNKLIKVGQEYDLKQMNSWLVAS 158

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y+++ +    G F V GD ++I+P   + +  R+  FG++++ +  F   T + I   +
Sbjct: 159 GYRKEALVAKPGEFAVRGDILDIYPLD-QALPVRIEFFGDEVDTVKSFDVNTQKSISEKD 217

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            I +   S  +     L  A   IK+E+K  L
Sbjct: 218 QINVLPASDRIFESANLKKAHNLIKDEIKESL 249


>gi|319648579|ref|ZP_08002793.1| mfd protein [Bacillus sp. BT1B_CT2]
 gi|317389346|gb|EFV70159.1| mfd protein [Bacillus sp. BT1B_CT2]
          Length = 1177

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 134/326 (41%), Gaps = 41/326 (12%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           ++ G++   K QLL G++GS ++   A + +  +RP  ++  N   A ++  +       
Sbjct: 17  IVNGLNEGLKEQLLAGLSGSARSLFTAALTKETRRPVFLITHNLYQAQKITDDLTGLIKD 76

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
                        QP    P  +    + +  + ++   R      L      IVV+  +
Sbjct: 77  -------------QPVLLYPVNELISSEIAVASPELRSQRLDVLNRLASGETPIVVAPAA 123

Query: 280 CIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
            +   +  VE +    + ++ G  ++ ++LL  LV+  Y+R D+    G F + G  I++
Sbjct: 124 AVRRMLPPVEVWQNSQIHIETGRDIDPEQLLQKLVQMGYERTDMVAAPGEFSIRGGIIDV 183

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           + S  E+   R+ +F  +++ I         +I N +  +       VT  P        
Sbjct: 184 Y-SLTEENPVRIELFDTEVDSI---------RIFNTDDQRSLETRDEVTIGPAKELI--- 230

Query: 399 IKEELKMRLIELEKEG---------RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
           +++E + R +E   +G            + + L+Q I  D E L+     Q +  Y  Y 
Sbjct: 231 VRDEDRQRALEQIDQGLANSLKKLKLDKQKEILDQNIAEDKERLKEGHIGQEMVKYLSYF 290

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDE 475
                 E P +L +Y P+++LL +DE
Sbjct: 291 Y-----EKPASLLDYFPKNTLLILDE 311



 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V Y H ++   E   ++ +   G+ DVLV   ++  G+DIP    + + DADK G  
Sbjct: 858 DAKVTYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|163791051|ref|ZP_02185472.1| transcription-repair coupling factor [Carnobacterium sp. AT7]
 gi|159873696|gb|EDP67779.1| transcription-repair coupling factor [Carnobacterium sp. AT7]
          Length = 1173

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 17/227 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS +T  ++ ++   ++P I++  N   A QL  +F ++ P + +  F     
Sbjct: 27  QLVTGLSGSARTLVLSTLVAEKKKPFIIVTHNLFHANQLMEDFADWVPEDRLHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVE 288
                      D  I  E S+     R    AT   L  E+   ++V        +    
Sbjct: 82  ---------PVDEMIYAEMSVASPEARAERVATLDFLLSEKYGVVIVPLAGVRKLLPPKA 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            +      +K G  ++   L   LV   Y RQ +    G F + G  I+I+ S  E+   
Sbjct: 133 LWKAAQFTIKQGGELDLTNLAQRLVDMGYTRQQLVSTPGEFSIRGGIIDIY-SLTEEFPV 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           R+ +F  +++ +  F   + + I+ +E I I   S  V  +  L  A
Sbjct: 192 RIDLFDTEVDSLRYFDAASQRSIQTIEKIIILPASDTVYTKEQLTAA 238


>gi|303231983|ref|ZP_07318691.1| transcription-repair coupling factor [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513412|gb|EFL55446.1| transcription-repair coupling factor [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 1096

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 119/265 (44%), Gaps = 43/265 (16%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS- 211
           Q  ++   LK    + K  ++ G++GS K+F +++ I   Q  +I++  +     +L+  
Sbjct: 11  QNPSMTDGLKAFRQKGK-SVIYGLSGSQKSFLLSRAIPEEQVQSIIIVVHDKEHKELWER 69

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD--TYIEKESSINEQIDRMRHSATRSLLER 269
           +   F+P+  V  F             P T+   +     S+  Q  +MR     S+L  
Sbjct: 70  DLAFFWPNVQVLPF-------------PITERVEFTTVARSLEGQGAQMR---ALSMLAW 113

Query: 270 NDCIVVSSVSCIYGIGSVESYSQMIV----------QLKIGDSVEQKELLSSLVKQQYKR 319
           N  +VV        + ++E  +Q +V           L++  S+E+ ELL  LVK  Y+R
Sbjct: 114 NRPVVV--------LATIEEATQYVVSPQYVISQSVHLEVSQSIERDELLEKLVKIGYER 165

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RG F V GD  +IFP + +D   R+  FG++I+ +  F   T    R++E +  
Sbjct: 166 VDQVEQRGHFSVRGDIFDIFPVNSDDPI-RMEFFGDEIDTMRHFSVDTQ---RSIEMVDA 221

Query: 380 Y-ANSHYVTPRPTLNTAMKYIKEEL 403
           Y     ++T     +T + Y K+ L
Sbjct: 222 YTVTPFFLTSDDADSTLLSYAKDGL 246



 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           ++R    H ++   +  EI+ D   G +DVL+  +++  GLDIP    + I DAD+ G 
Sbjct: 783 DLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGL 841


>gi|16799323|ref|NP_469591.1| transcription-repair coupling factor [Listeria innocua Clip11262]
 gi|16412675|emb|CAC95479.1| transcription-repair coupling factor [Listeria innocua Clip11262]
          Length = 1179

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 138/320 (43%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKSQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V+    Y          P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  ID---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    + +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +  +++++ + L EL KE    + Q L + +  DLEML    S    + + +Y+    P 
Sbjct: 240 VTRLEKKMTLTLNEL-KENE--DKQALVENLEEDLEMLR---SGVKPDMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +LF+Y+P+++ + +DE
Sbjct: 294 --PASLFDYLPKNTAILLDE 311



 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H ++   E   +I     G+FDVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 859 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917

Query: 666 RSKTSLIQTIGRAAR 680
              + L Q  GR  R
Sbjct: 918 ---SQLYQLRGRVGR 929


>gi|268318833|ref|YP_003292489.1| Transcription-repair-coupling factor [Lactobacillus johnsonii
           FI9785]
 gi|262397208|emb|CAX66222.1| Transcription-repair-coupling factor [Lactobacillus johnsonii
           FI9785]
          Length = 1165

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 125/308 (40%), Gaps = 27/308 (8%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           EK  LL GV        + ++++A Q+  I++  N+  A  L  E  N  P + V  F  
Sbjct: 23  EKRSLLTGVNSGAFAAVLMQMLKAWQQTLILVEDNEEKAQTLLDELGNLLPDDMVFGF-- 80

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
                 P      T T I     +++++  +   A +    R   +VV+  +  Y +   
Sbjct: 81  ------PVDATIATQTAIASPDELSQRLQTLEFLAEK----RAGIVVVTPQALQYKLSDP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             +++     K     +  +L   L +  Y+R+ I    G F   GD ++I+P   E+  
Sbjct: 131 RDFTKAKKIFKPEAEFDLDKLTEWLTQAGYRRESIVARPGEFARRGDILDIYPLDQEN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+ +FG++++ + EF   T + +   ++I I      V        A++ IK+++    
Sbjct: 190 IRIELFGDEVDTVKEFDSATQRSLEEKDSISIGPALDRVFSPHNFQEAVEKIKQDMSEST 249

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
            E E          ++      +++LE  G   +      YL  R+       L +Y+ +
Sbjct: 250 AEEES---------VKNHFVKAIDLLEAGGLPDNYAFLIDYLLPRS-----FNLIDYLDK 295

Query: 468 DSLLFVDE 475
           D LL  D+
Sbjct: 296 DGLLLFDD 303



 Score = 37.7 bits (86), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           ++ Y+H  +   +  +I+      +FD+LV   ++  G+D+P    + + DAD  G L  
Sbjct: 851 KIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVEDADHYG-LSQ 909

Query: 668 KTSLIQTIGRAAR 680
              L   IGR+AR
Sbjct: 910 LYQLRGRIGRSAR 922


>gi|297157723|gb|ADI07435.1| transcription-repair coupling factor [Streptomyces bingchenggensis
           BCW-1]
          Length = 1200

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 94/215 (43%), Gaps = 22/215 (10%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           + + F +A +  +  RP + +      A  L +  ++  P + V  + S+ +    E   
Sbjct: 38  AARPFAVAALARSAGRPVLAVTATGREAEDLAAALRSLLPPDRVVEYPSW-ETLPHERLS 96

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQM 293
           PR+DT   + + +     R+ H            +VV+ V  +      G+G +E     
Sbjct: 97  PRSDTVGRRLAVLR----RLAHPRVDDPAAGPVSVVVAPVRSVLQPQVKGLGDLEP---- 148

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            V L+ G S + +E++  L    Y R ++   RG F V G  +++FP   E+   R+  +
Sbjct: 149 -VSLRSGQSADLEEIVDGLAAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRIEFW 206

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           G+D+EEI  F      K+ +  ++++  +  +  P
Sbjct: 207 GDDVEEIRYF------KVADQRSLEVAEHGLWAPP 235


>gi|319654942|ref|ZP_08009016.1| transcription-repair coupling factor [Bacillus sp. 2_A_57_CT2]
 gi|317393367|gb|EFV74131.1| transcription-repair coupling factor [Bacillus sp. 2_A_57_CT2]
          Length = 1179

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 137/324 (42%), Gaps = 32/324 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           ++ ++ GI    + Q+L G++GS +T  ++ + E   RP +V+  N + A +LY +  N 
Sbjct: 14  VSSIMSGIEEGLREQMLAGLSGSARTLFLSSIYEQSGRPMLVVTHNLLQAQKLYDDIVNL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI-NEQIDRMRHSATRSLLERNDCIVV 275
                           + E ++   +  I  E  I + ++   R  A     +    I++
Sbjct: 74  AG--------------ESEVFLYPANELIAAEMGIASPELKAQRIEALNYWSKYKTGIMI 119

Query: 276 SSVSCIYGI----GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
             ++ +  I    G  + Y    + LKIGD +   E L + V+  Y R ++    G F V
Sbjct: 120 VPMAGLRKILPPPGHWQKYQ---LSLKIGDEL-TDEQLKNFVRMGYVRSEMVSSPGEFSV 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I+I+P    D   R+ +F  +++ I  F     +    +  I I   +        
Sbjct: 176 RGGIIDIYPLTEADPV-RIELFDTEVDSIRTFSLEDQRSKEKLNEISIGPATEIPLDSEH 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
             T ++ +++ L   L +L+ +       +L Q + Y+LE L      + +  Y  +   
Sbjct: 235 FQTLIEKLEKGLGSSLKKLKDD---KAKTQLAQNVGYELEQLRMGNKPEHLFKYLSFAF- 290

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDE 475
               E   +L +Y+P + L+F+DE
Sbjct: 291 ----EEGSSLVDYLPANGLIFIDE 310



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DADK G  
Sbjct: 857 DARVTYAHGKMTENELESVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVHDADKMGL- 915

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 916 ---SQLYQLRGRVGRS 928


>gi|291546533|emb|CBL19641.1| hypothetical protein CK1_15270 [Ruminococcus sp. SR1/5]
          Length = 461

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 2/162 (1%)

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV- 278
           NA E +  Y  Y +   + P  D    +       + R R    R+LLE+ +  VV+S+ 
Sbjct: 61  NAKEIYEDYRFYDKNVYFYPAKDLLFFQADIHGNLLIRQRMRVIRALLEQEEVTVVTSID 120

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
            C+  +  +E     ++  K    ++  +L   LV+  Y+R     + G F V G  I+I
Sbjct: 121 GCMDFLMPLEKIRSRLLHFKSDSVIDLDQLKEELVELGYERTGQVELPGQFSVRGGIIDI 180

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +P   ED  WR+ ++ ++++ I  F   + + + NV+ I IY
Sbjct: 181 YPL-TEDNPWRIELWDDEVDSIRSFDAESQRSLENVDEITIY 221


>gi|153811642|ref|ZP_01964310.1| hypothetical protein RUMOBE_02034 [Ruminococcus obeum ATCC 29174]
 gi|149832383|gb|EDM87468.1| hypothetical protein RUMOBE_02034 [Ruminococcus obeum ATCC 29174]
          Length = 1108

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 3/163 (1%)

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI-VVSSV 278
           +A E +  Y  Y +   Y P  D    +       + R R    R+LLER D I VV+S+
Sbjct: 61  SAKELYEDYRFYDKRVYYYPAKDLLFFQADIHGNLLIRQRMQVIRALLEREDEITVVTSI 120

Query: 279 -SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             C+  +  +E   + ++  +   +++  +L ++LV   Y+R     + G F + G  I+
Sbjct: 121 DGCMDYLVPLEKIEKQLIHFRNDSTLDMDKLTAALVHMGYERVGQVEMPGQFSIRGGIID 180

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           I+ S  E+  WR+ ++G++I+ I  F   + + + N++ + IY
Sbjct: 181 IY-SLTEENPWRIELWGDEIDSIRSFDAQSQRSLENLDDVTIY 222


>gi|163938061|ref|YP_001642945.1| transcription-repair coupling factor [Bacillus weihenstephanensis
           KBAB4]
 gi|163860258|gb|ABY41317.1| transcription-repair coupling factor [Bacillus weihenstephanensis
           KBAB4]
          Length = 1176

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/320 (19%), Positives = 146/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKQSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEVGVASPELKAQRIEVLNRLAAGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  ++   LL +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGDFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F   ++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTQVDSIRLFDVEEQRSQDKRESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K+++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PE+ ++ +DE
Sbjct: 292 KEPASLIDYLPENGVVILDE 311



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|284033574|ref|YP_003383505.1| transcription-repair coupling factor [Kribbella flavida DSM 17836]
 gi|283812867|gb|ADB34706.1| transcription-repair coupling factor [Kribbella flavida DSM 17836]
          Length = 1212

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           VQL +GDSVE +++++ L    Y R D+   RG F V G  I++FP   E+   RV  FG
Sbjct: 156 VQLHVGDSVELEDVVTRLAAAAYNRVDLVERRGEFAVRGGIIDVFPP-TEEHPLRVDFFG 214

Query: 355 NDIEEISEF 363
           +D+EEI  F
Sbjct: 215 DDVEEIRYF 223


>gi|254430155|ref|ZP_05043858.1| transcription-repair coupling factor [Cyanobium sp. PCC 7001]
 gi|197624608|gb|EDY37167.1| transcription-repair coupling factor [Cyanobium sp. PCC 7001]
          Length = 1189

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 139/341 (40%), Gaps = 35/341 (10%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G   + +    + +  A   P +V+ P    A +  +  +     ++  Y  S    Y
Sbjct: 31  LSGAGRAARALISSALAGAAHAPLLVIVPTLEEAGRWAALLELMGWPSSQLYPTSEGSPY 90

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
             E + P ++    +   ++E +DR    A+R+ L     IV +  +    +    +   
Sbjct: 91  --EGFDPTSEITWGQLQVLSELLDRSEDGASRNRL----AIVATERALQPHLPPPAALEA 144

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             + L+ G SV+ +EL  +L +  Y R       GT+   GD +++FP   E +  R+  
Sbjct: 145 RCLSLRKGQSVDLEELAGTLTQLGYARVPSIDQEGTWSRRGDIVDVFPVSAE-LPVRLEF 203

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG ++E++ EF P + + +   E +++    +     P +  A++    E   +L+  E 
Sbjct: 204 FGEELEKLREFDPTSQRSLDATEVVRLTPTGYT----PLIADALRESMPEGLEQLLSPEA 259

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           + +LLE                  G+ + +    R L G    E P +L +Y+P  +++ 
Sbjct: 260 QEQLLEG-----------------GTPEGL----RRLMGLAWAE-PASLLDYLPAGTVIA 297

Query: 473 VDESHVTIPQISGMYRGDF-HRKATLAEYGFRLPSCMDNRP 512
           VDE    +      Y     H      E G  LP+ + +RP
Sbjct: 298 VDERRHCLAHGQQWYEHAVEHHAEVTRELGAALPAVL-HRP 337


>gi|290889683|ref|ZP_06552772.1| hypothetical protein AWRIB429_0162 [Oenococcus oeni AWRIB429]
 gi|290480680|gb|EFD89315.1| hypothetical protein AWRIB429_0162 [Oenococcus oeni AWRIB429]
          Length = 1188

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 101/221 (45%), Gaps = 13/221 (5%)

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           D  R  A R+LL + + IVV  +S +       E + Q ++  KI +S  Q++L   L++
Sbjct: 106 DLSRVLALRALLSKENSIVVVPLSGLSRRYPDPEFFQQAVLDFKIANSYPQEQLAKKLIE 165

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y +Q +    G F V G+ ++I+P +  D   R+  F +++E +  F   + + +  +
Sbjct: 166 MGYNKQTLVANPGEFSVRGEIVDIYPINF-DEPIRLDFFDDELESMRTFDADSQKSLNKI 224

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           +   +   S ++ PR   +  +K    +L+   ++   + +  E ++L +     LE  +
Sbjct: 225 KQASVSPVSDFLLPRAEFSDGLK----QLEQAFVDYLNKLKGAEKKKLTEFFNPLLEAAK 280

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                  +  +S +           ++FEY+  + L+ +D+
Sbjct: 281 HFSYGHELLPFSEFFLKH-------SIFEYLQSEDLILIDD 314


>gi|293628906|dbj|BAJ04860.1| vasa homolog [Cynops pyrrhogaster]
          Length = 717

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 32/203 (15%)

Query: 581 QGL---RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           QGL   R ++ V TK+ A+ LT  L + N+    +H +    ER E + D R GK +VLV
Sbjct: 522 QGLGTERTMVFVKTKKKADYLTTLLCQENVLATSIHGDRLQKEREEALADFRFGKCNVLV 581

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKS 696
             N+   GLDI     V I D        +    +  IGR  R  N  K I + D+    
Sbjct: 582 ATNVAARGLDIENVQHVIIFDLSD-----NIEEYVHRIGRTGRCGNVGKAITFFDSDDNE 636

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED----AATTNISIDAQQ 752
                D T  R   ++  + +  +              P+ LE+    A+ T  SI +  
Sbjct: 637 -----DRTVARSLVKVLSDAQQEV--------------PVWLEEIAFSASGTFSSIGSTF 677

Query: 753 LSLSKKKGKAHLKSLRKQMHLAA 775
            S+  ++G +H+     Q H+  
Sbjct: 678 ASVDSRRGVSHIPGGHAQSHIPG 700


>gi|116490296|ref|YP_809840.1| transcription-repair coupling factor [Oenococcus oeni PSU-1]
 gi|116091021|gb|ABJ56175.1| transcription-repair coupling factor [Oenococcus oeni PSU-1]
          Length = 1188

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 101/221 (45%), Gaps = 13/221 (5%)

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           D  R  A R+LL + + IVV  +S +       E + Q ++  KI +S  Q++L   L++
Sbjct: 106 DLSRVLALRALLSKENSIVVVPLSGLSRRYPDPEFFQQAVLDFKIANSYPQEQLAKKLIE 165

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y +Q +    G F V G+ ++I+P +  D   R+  F +++E +  F   + + +  +
Sbjct: 166 MGYNKQTLVANPGEFSVRGEIVDIYPINF-DEPIRLDFFDDELESMRTFDADSQKSLNKI 224

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           +   +   S ++ PR   +  +K    +L+   ++   + +  E ++L +     LE  +
Sbjct: 225 KQASVSPVSDFLLPRAEFSDGLK----QLEQAFVDYLNKLKGAEKKKLTEFFNPLLEAAK 280

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                  +  +S +           ++FEY+  + L+ +D+
Sbjct: 281 HFSYGHELLPFSEFFLKH-------SIFEYLQSEDLILIDD 314


>gi|257454198|ref|ZP_05619468.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus
           SK60]
 gi|257448371|gb|EEV23344.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus
           SK60]
          Length = 777

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++G  I+ T  TKR +E++ E L + + +  Y+H ++   +R  I+ DLR GKFD++V  
Sbjct: 324 ERGQAIIFTA-TKRSSEEVAERLQQWDHKACYLHGDLPQSKRNRIVSDLRSGKFDIVVAT 382

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++   GLD+P    V   D       R     +  IGR+ R
Sbjct: 383 DVAARGLDLPNITHVFNYD-----LPRQVEDYVHRIGRSGR 418


>gi|294794147|ref|ZP_06759284.1| transcription-repair coupling factor [Veillonella sp. 3_1_44]
 gi|294455717|gb|EFG24089.1| transcription-repair coupling factor [Veillonella sp. 3_1_44]
          Length = 1098

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 113/249 (45%), Gaps = 42/249 (16%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           R+   ++ G++GS K+F +++   A +++P +++  +K        +   F+P+  V+ F
Sbjct: 24  RKGKSVIYGLSGSQKSFLLSQSFSAGLKKPVVIVVHDKDHKEMWERDLAFFWPNVPVQSF 83

Query: 226 VSYYDYYQPEAYVPRTD--TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
                        P TD   +     S+ +Q  +MR  A   LL   +  VV        
Sbjct: 84  -------------PITDHVDFTTVARSLEDQGAQMRALA---LLAWQEPAVV-------- 119

Query: 284 IGSVESYSQMIV----------QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           I + E  +Q +V             + DS+E+   L  LV   Y+R D    RG F V G
Sbjct: 120 IANAEEVTQYVVSPHYLKGQSLHFALNDSIERDVALEQLVTIGYERVDQVEQRGHFAVRG 179

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D ++I+P +  D   R+  FG++I+ +  F+ +  Q  R++E I+ Y  + +   +   +
Sbjct: 180 DILDIYPVN-SDHPIRIEFFGDEIDTL-RFFSVENQ--RSIEQIESYTVTPFFLGKSDAD 235

Query: 394 -TAMKYIKE 401
            T + Y+KE
Sbjct: 236 STLLSYVKE 244



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 31/59 (52%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            +R    H ++   +  EI+ D   G +DVL+  +++  GLDIP    + I DAD+ G 
Sbjct: 783 GLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGL 841


>gi|314969382|gb|EFT13480.1| transcription-repair coupling factor [Propionibacterium acnes
           HL037PA1]
          Length = 1208

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259
           A +  +  K +   +AV Y+ S+ +    E   PRTDT       + +      ++ ++ 
Sbjct: 81  AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 139

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +  RSLL+            + G+G V       V+L +G+  +  EL + LV   Y R
Sbjct: 140 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            D+   RG F V G  +++FP  LE    R+  FG++IEE++ F
Sbjct: 185 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227


>gi|313792864|gb|EFS40931.1| transcription-repair coupling factor [Propionibacterium acnes
           HL110PA1]
 gi|313802684|gb|EFS43906.1| transcription-repair coupling factor [Propionibacterium acnes
           HL110PA2]
 gi|313840319|gb|EFS78033.1| transcription-repair coupling factor [Propionibacterium acnes
           HL086PA1]
 gi|314964282|gb|EFT08382.1| transcription-repair coupling factor [Propionibacterium acnes
           HL082PA1]
 gi|315078702|gb|EFT50733.1| transcription-repair coupling factor [Propionibacterium acnes
           HL053PA2]
 gi|315081837|gb|EFT53813.1| transcription-repair coupling factor [Propionibacterium acnes
           HL078PA1]
 gi|327456823|gb|EGF03478.1| transcription-repair coupling factor [Propionibacterium acnes
           HL092PA1]
          Length = 1208

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259
           A +  +  K +   +AV Y+ S+ +    E   PRTDT       + +      ++ ++ 
Sbjct: 81  AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 139

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +  RSLL+            + G+G V       V+L +G+  +  EL + LV   Y R
Sbjct: 140 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            D+   RG F V G  +++FP  LE    R+  FG++IEE++ F
Sbjct: 185 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227


>gi|313765341|gb|EFS36705.1| transcription-repair coupling factor [Propionibacterium acnes
           HL013PA1]
 gi|313806696|gb|EFS45203.1| transcription-repair coupling factor [Propionibacterium acnes
           HL087PA2]
 gi|313814596|gb|EFS52310.1| transcription-repair coupling factor [Propionibacterium acnes
           HL025PA1]
 gi|313815252|gb|EFS52966.1| transcription-repair coupling factor [Propionibacterium acnes
           HL059PA1]
 gi|313817239|gb|EFS54953.1| transcription-repair coupling factor [Propionibacterium acnes
           HL046PA2]
 gi|313821699|gb|EFS59413.1| transcription-repair coupling factor [Propionibacterium acnes
           HL036PA1]
 gi|313824410|gb|EFS62124.1| transcription-repair coupling factor [Propionibacterium acnes
           HL036PA2]
 gi|313826767|gb|EFS64481.1| transcription-repair coupling factor [Propionibacterium acnes
           HL063PA1]
 gi|313828557|gb|EFS66271.1| transcription-repair coupling factor [Propionibacterium acnes
           HL063PA2]
 gi|314916016|gb|EFS79847.1| transcription-repair coupling factor [Propionibacterium acnes
           HL005PA4]
 gi|314916921|gb|EFS80752.1| transcription-repair coupling factor [Propionibacterium acnes
           HL050PA1]
 gi|314921562|gb|EFS85393.1| transcription-repair coupling factor [Propionibacterium acnes
           HL050PA3]
 gi|314931114|gb|EFS94945.1| transcription-repair coupling factor [Propionibacterium acnes
           HL067PA1]
 gi|314954829|gb|EFS99235.1| transcription-repair coupling factor [Propionibacterium acnes
           HL027PA1]
 gi|314958995|gb|EFT03097.1| transcription-repair coupling factor [Propionibacterium acnes
           HL002PA1]
 gi|314961290|gb|EFT05391.1| transcription-repair coupling factor [Propionibacterium acnes
           HL002PA2]
 gi|314980484|gb|EFT24578.1| transcription-repair coupling factor [Propionibacterium acnes
           HL072PA2]
 gi|315086378|gb|EFT58354.1| transcription-repair coupling factor [Propionibacterium acnes
           HL002PA3]
 gi|315087626|gb|EFT59602.1| transcription-repair coupling factor [Propionibacterium acnes
           HL072PA1]
 gi|315099738|gb|EFT71714.1| transcription-repair coupling factor [Propionibacterium acnes
           HL059PA2]
 gi|315101957|gb|EFT73933.1| transcription-repair coupling factor [Propionibacterium acnes
           HL046PA1]
 gi|315106536|gb|EFT78512.1| transcription-repair coupling factor [Propionibacterium acnes
           HL030PA1]
 gi|315110324|gb|EFT82300.1| transcription-repair coupling factor [Propionibacterium acnes
           HL030PA2]
 gi|327333610|gb|EGE75330.1| transcription-repair coupling factor [Propionibacterium acnes
           HL096PA3]
 gi|327445362|gb|EGE92016.1| transcription-repair coupling factor [Propionibacterium acnes
           HL013PA2]
 gi|327454831|gb|EGF01486.1| transcription-repair coupling factor [Propionibacterium acnes
           HL087PA3]
 gi|327455689|gb|EGF02344.1| transcription-repair coupling factor [Propionibacterium acnes
           HL083PA2]
 gi|328755887|gb|EGF69503.1| transcription-repair coupling factor [Propionibacterium acnes
           HL087PA1]
 gi|328756670|gb|EGF70286.1| transcription-repair coupling factor [Propionibacterium acnes
           HL025PA2]
          Length = 1208

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259
           A +  +  K +   +AV Y+ S+ +    E   PRTDT       + +      ++ ++ 
Sbjct: 81  AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 139

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +  RSLL+            + G+G V       V+L +G+  +  EL + LV   Y R
Sbjct: 140 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            D+   RG F V G  +++FP  LE    R+  FG++IEE++ F
Sbjct: 185 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227


>gi|319891456|ref|YP_004148331.1| Transcription-repair coupling factor [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161152|gb|ADV04695.1| Transcription-repair coupling factor [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323465374|gb|ADX77527.1| transcription-repair coupling factor [Staphylococcus
           pseudintermedius ED99]
          Length = 1170

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 138/308 (44%), Gaps = 31/308 (10%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           L+ G+T + K   +A++ ++  R  +++  N   A ++ ++   F P + V      Y Y
Sbjct: 28  LVTGLTPAAKASIIAELYQSDHRQVVLVTNNLYQADKIEADLLQFVPDDEV------YKY 81

Query: 232 YQPEAYVPRTDTYIEKESSINEQI--DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
                  P  D   E+ S+ + ++  +R+R + T    +R    +V        +   E 
Sbjct: 82  -------PVQDMMTEEFSTQSPELMSERVR-TLTALANDRRGLFIVPLNGLKKLLTPKEM 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  ++GD +E   LL  LV   Y+R+ +    G F V G  I+++P   E +  R
Sbjct: 134 WRDHQMTFEVGDDIEIDALLEKLVSMGYRRESVVSNIGEFSVRGGIIDVYPLLGEPI--R 191

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           + +F  +++ I +F   T +   N+++ +I     Y+         M  +K   +    +
Sbjct: 192 IELFDTEVDSIRQFDVETQRSSENIDSAEITTAHDYIMTEAVRQQMMTALKSAYETTRPK 251

Query: 410 LEKEGRLLEAQRLEQRITYD-LEMLETTG-SCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
           ++K  R    Q L++  TYD  +M+E T    Q +     ++      E P T+ +Y+ +
Sbjct: 252 IDKSVR----QDLKE--TYDSFQMVEDTHFDPQILRRLVAFMY-----EKPTTILDYLKD 300

Query: 468 DSLLFVDE 475
           ++++ VDE
Sbjct: 301 NAIILVDE 308


>gi|314987497|gb|EFT31588.1| transcription-repair coupling factor [Propionibacterium acnes
           HL005PA2]
 gi|314989037|gb|EFT33128.1| transcription-repair coupling factor [Propionibacterium acnes
           HL005PA3]
 gi|315082669|gb|EFT54645.1| transcription-repair coupling factor [Propionibacterium acnes
           HL027PA2]
 gi|328758609|gb|EGF72225.1| transcription-repair coupling factor [Propionibacterium acnes
           HL020PA1]
          Length = 1208

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259
           A +  +  K +   +AV Y+ S+ +    E   PRTDT       + +      ++ ++ 
Sbjct: 81  AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 139

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +  RSLL+            + G+G V       V+L +G+  +  EL + LV   Y R
Sbjct: 140 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            D+   RG F V G  +++FP  LE    R+  FG++IEE++ F
Sbjct: 185 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227


>gi|314926804|gb|EFS90635.1| transcription-repair coupling factor [Propionibacterium acnes
           HL036PA3]
          Length = 1208

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259
           A +  +  K +   +AV Y+ S+ +    E   PRTDT       + +      ++ ++ 
Sbjct: 81  AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 139

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +  RSLL+            + G+G V       V+L +G+  +  EL + LV   Y R
Sbjct: 140 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            D+   RG F V G  +++FP  LE    R+  FG++IEE++ F
Sbjct: 185 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227


>gi|289424265|ref|ZP_06426048.1| transcription-repair coupling factor [Propionibacterium acnes
           SK187]
 gi|289154962|gb|EFD03644.1| transcription-repair coupling factor [Propionibacterium acnes
           SK187]
          Length = 1198

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259
           A +  +  K +   +AV Y+ S+ +    E   PRTDT       + +      ++ ++ 
Sbjct: 71  AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 129

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +  RSLL+            + G+G V       V+L +G+  +  EL + LV   Y R
Sbjct: 130 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 174

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            D+   RG F V G  +++FP  LE    R+  FG++IEE++ F
Sbjct: 175 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 217


>gi|289428412|ref|ZP_06430098.1| transcription-repair coupling factor [Propionibacterium acnes J165]
 gi|289158384|gb|EFD06601.1| transcription-repair coupling factor [Propionibacterium acnes J165]
          Length = 1198

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259
           A +  +  K +   +AV Y+ S+ +    E   PRTDT       + +      ++ ++ 
Sbjct: 71  AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 129

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +  RSLL+            + G+G V       V+L +G+  +  EL + LV   Y R
Sbjct: 130 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 174

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            D+   RG F V G  +++FP  LE    R+  FG++IEE++ F
Sbjct: 175 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 217


>gi|229153832|ref|ZP_04281963.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 4342]
 gi|228629636|gb|EEK86332.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 4342]
          Length = 1176

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/320 (19%), Positives = 144/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L      I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  ++    L +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K+++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +L +Y+PED ++ +DE
Sbjct: 292 NEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|313772670|gb|EFS38636.1| transcription-repair coupling factor [Propionibacterium acnes
           HL074PA1]
 gi|313810893|gb|EFS48607.1| transcription-repair coupling factor [Propionibacterium acnes
           HL083PA1]
 gi|313834448|gb|EFS72162.1| transcription-repair coupling factor [Propionibacterium acnes
           HL056PA1]
 gi|314974450|gb|EFT18545.1| transcription-repair coupling factor [Propionibacterium acnes
           HL053PA1]
 gi|314977360|gb|EFT21455.1| transcription-repair coupling factor [Propionibacterium acnes
           HL045PA1]
 gi|314985541|gb|EFT29633.1| transcription-repair coupling factor [Propionibacterium acnes
           HL005PA1]
 gi|315097614|gb|EFT69590.1| transcription-repair coupling factor [Propionibacterium acnes
           HL038PA1]
 gi|327331627|gb|EGE73366.1| transcription-repair coupling factor [Propionibacterium acnes
           HL096PA2]
 gi|327446976|gb|EGE93630.1| transcription-repair coupling factor [Propionibacterium acnes
           HL043PA1]
 gi|327449987|gb|EGE96641.1| transcription-repair coupling factor [Propionibacterium acnes
           HL043PA2]
 gi|328761618|gb|EGF75134.1| transcription-repair coupling factor [Propionibacterium acnes
           HL099PA1]
          Length = 1208

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259
           A +  +  K +   +AV Y+ S+ +    E   PRTDT       + +      ++ ++ 
Sbjct: 81  AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 139

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +  RSLL+            + G+G V       V+L +G+  +  EL + LV   Y R
Sbjct: 140 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            D+   RG F V G  +++FP  LE    R+  FG++IEE++ F
Sbjct: 185 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227


>gi|332674949|gb|AEE71765.1| transcription-repair-coupling factor [Propionibacterium acnes 266]
          Length = 1222

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259
           A +  +  K +   +AV Y+ S+ +    E   PRTDT       + +      ++ ++ 
Sbjct: 95  AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 153

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +  RSLL+            + G+G V       V+L +G+  +  EL + LV   Y R
Sbjct: 154 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 198

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            D+   RG F V G  +++FP  LE    R+  FG++IEE++ F
Sbjct: 199 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 241


>gi|50842025|ref|YP_055252.1| transcription-repair coupling factor [Propionibacterium acnes
           KPA171202]
 gi|50839627|gb|AAT82294.1| transcription-repair coupling factor [Propionibacterium acnes
           KPA171202]
          Length = 1222

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259
           A +  +  K +   +AV Y+ S+ +    E   PRTDT       + +      ++ ++ 
Sbjct: 95  AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 153

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +  RSLL+            + G+G V       V+L +G+  +  EL + LV   Y R
Sbjct: 154 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 198

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            D+   RG F V G  +++FP  LE    R+  FG++IEE++ F
Sbjct: 199 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 241


>gi|47569902|ref|ZP_00240569.1| transcription-repair coupling factor [Bacillus cereus G9241]
 gi|228983309|ref|ZP_04143523.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229194444|ref|ZP_04321248.1| Transcription-repair-coupling factor [Bacillus cereus m1293]
 gi|47553436|gb|EAL11820.1| transcription-repair coupling factor [Bacillus cereus G9241]
 gi|228589034|gb|EEK47048.1| Transcription-repair-coupling factor [Bacillus cereus m1293]
 gi|228776423|gb|EEM24775.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 1176

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/320 (19%), Positives = 144/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L      I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  ++    L +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K+++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +L +Y+PED ++ +DE
Sbjct: 292 NEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|145974735|gb|ABQ00071.1| VASA [Fenneropenaeus chinensis]
          Length = 712

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+ V  KR+A+ +  YL E+N R   MH +    +R + + D R G F++LV   +  
Sbjct: 527 KILVFVEQKRVADFVGTYLCEKNFRATTMHGDRYQAQREQALTDFRTGVFNILVATAVAA 586

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLDI   G+V   D  KE         +  IGR  R
Sbjct: 587 RGLDIKGIGVVVNYDLPKE-----IDEYVHRIGRTGR 618


>gi|228912793|ref|ZP_04076441.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228846853|gb|EEM91857.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 1176

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/320 (19%), Positives = 144/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L      I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  ++    L +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K+++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +L +Y+PED ++ +DE
Sbjct: 292 NEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|295130108|ref|YP_003580771.1| transcription-repair coupling factor [Propionibacterium acnes
           SK137]
 gi|291376182|gb|ADE00037.1| transcription-repair coupling factor [Propionibacterium acnes
           SK137]
          Length = 1222

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259
           A +  +  K +   +AV Y+ S+ +    E   PRTDT       + +      ++ ++ 
Sbjct: 95  AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 153

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +  RSLL+            + G+G V       V+L +G+  +  EL + LV   Y R
Sbjct: 154 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 198

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            D+   RG F V G  +++FP  LE    R+  FG++IEE++ F
Sbjct: 199 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 241


>gi|49479988|ref|YP_034406.1| transcription-repair coupling factor [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49331544|gb|AAT62190.1| transcription-repair coupling factor [Bacillus thuringiensis
           serovar konkukian str. 97-27]
          Length = 1178

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/320 (19%), Positives = 144/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 16  IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 75

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L      I+V+
Sbjct: 76  LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 122

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  ++    L +L    Y+R+ +    G F + G  
Sbjct: 123 PVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 182

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 183 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 241

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K+++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 242 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 293

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +L +Y+PED ++ +DE
Sbjct: 294 NEPASLIDYLPEDGVVILDE 313



 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 860 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 918

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 919 ---SQLYQLRGRVGRS 931


>gi|52145163|ref|YP_081665.1| transcription-repair coupling factor [Bacillus cereus E33L]
 gi|51978632|gb|AAU20182.1| transcription-repair coupling factor [Bacillus cereus E33L]
          Length = 1176

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/320 (19%), Positives = 144/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L      I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  ++    L +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K+++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +L +Y+PED ++ +DE
Sbjct: 292 NEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|324324043|gb|ADY19303.1| transcription-repair coupling factor [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 1176

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/320 (19%), Positives = 144/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L      I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  ++    L +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K+++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +L +Y+PED ++ +DE
Sbjct: 292 NEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|317970142|ref|ZP_07971532.1| transcription-repair coupling factor [Synechococcus sp. CB0205]
          Length = 1183

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 97/219 (44%), Gaps = 28/219 (12%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L+ GD  E + L  +L +  Y+R       G++   GD +++FP   E +  R+  FG
Sbjct: 141 LSLRKGDEFELEALGETLTRLGYERVTSIEQEGSWSRRGDIVDVFPVSAE-LPVRLEFFG 199

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
            ++E++ EF P + + +  +E +++  + +     P +  A++    E   +L+  E   
Sbjct: 200 EELEKLREFDPASQRSLDPIEVVRLTPSGY----GPLIADALREGMPEGLDQLLSPEASE 255

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           +LLE                  G+ + +    R L G    E P +L +Y+P+ +L+ +D
Sbjct: 256 QLLEG-----------------GTPEGM----RRLMGLAWSE-PASLLDYLPDGTLIAID 293

Query: 475 ESHVTIPQISGMYRGDF-HRKATLAEYGFRLPSCMDNRP 512
           E    + Q    +     H     AE G  LP+ +  RP
Sbjct: 294 ERRHCLSQGQQWFDHAIEHHAEVCAELGVELPAVLHRRP 332


>gi|313832012|gb|EFS69726.1| transcription-repair coupling factor [Propionibacterium acnes
           HL007PA1]
          Length = 1208

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259
           A +  +  K +   +AV Y+ S+ +    E   PRTDT       + +      ++ ++ 
Sbjct: 81  AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 139

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +  RSLL+            + G+G V       V+L +G+  +  EL + LV   Y R
Sbjct: 140 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            D+   RG F V G  +++FP  LE    R+  FG++IEE++ F
Sbjct: 185 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227


>gi|260906157|ref|ZP_05914479.1| transcription-repair coupling factor [Brevibacterium linens BL2]
          Length = 1197

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 20/188 (10%)

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           +T   A        P +++      A  L     ++   +++  F S+ +    E   PR
Sbjct: 45  RTLVSADSGSTTSAPQLIVTATTREAEDLARSLADWVAEDSIAIFPSW-ETLPHEKLSPR 103

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC-----IYGIGSVESYSQMIV 295
           +DT  ++   ++    R+ H +     +R+   +++ V       + G+G +E      V
Sbjct: 104 SDTVGQRLQILH----RLAHPSP----DRHLAFIIAPVRAFLQPLVKGLGDIEP-----V 150

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
           +L +GD  E  +L   L +  Y R D+   RG F V G  ++IFP   E  A R+  FG+
Sbjct: 151 ELGVGDEYEIDQLSQRLTELAYSRVDMVSRRGEFAVRGGIVDIFPPTDEH-ALRIEFFGD 209

Query: 356 DIEEISEF 363
           +I+EI EF
Sbjct: 210 EIDEIREF 217


>gi|327335135|gb|EGE76846.1| transcription-repair coupling factor [Propionibacterium acnes
           HL097PA1]
          Length = 1208

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259
           A +  +  K +   +AV Y+ S+ +    E   PRTDT       + +      ++ ++ 
Sbjct: 81  AEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 139

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +  RSLL+            + G+G V       V+L +G+  +  EL + LV   Y R
Sbjct: 140 VAPVRSLLQPQ----------VAGLGRVAP-----VRLAVGEEHDLTELATELVNAAYSR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            D+   RG F V G  +++FP  LE    R+  FG++IEE++ F
Sbjct: 185 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227


>gi|42779132|ref|NP_976379.1| transcription-repair coupling factor [Bacillus cereus ATCC 10987]
 gi|206977924|ref|ZP_03238811.1| transcription-repair coupling factor [Bacillus cereus H3081.97]
 gi|217957629|ref|YP_002336171.1| transcription-repair coupling factor [Bacillus cereus AH187]
 gi|222093823|ref|YP_002527872.1| transcription-repair coupling factor [Bacillus cereus Q1]
 gi|229136900|ref|ZP_04265528.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26]
 gi|42735047|gb|AAS38987.1| transcription-repair coupling factor [Bacillus cereus ATCC 10987]
 gi|206743830|gb|EDZ55250.1| transcription-repair coupling factor [Bacillus cereus H3081.97]
 gi|217067660|gb|ACJ81910.1| transcription-repair coupling factor [Bacillus cereus AH187]
 gi|221237870|gb|ACM10580.1| transcription-repair coupling factor [Bacillus cereus Q1]
 gi|228646565|gb|EEL02771.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26]
          Length = 1176

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/320 (19%), Positives = 144/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L      I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  ++    L +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPMKELWKQRQIEISLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K+++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +L +Y+PED ++ +DE
Sbjct: 292 NEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|196036345|ref|ZP_03103742.1| transcription-repair coupling factor [Bacillus cereus W]
 gi|196041756|ref|ZP_03109046.1| transcription-repair coupling factor [Bacillus cereus NVH0597-99]
 gi|196047377|ref|ZP_03114590.1| transcription-repair coupling factor [Bacillus cereus 03BB108]
 gi|218901255|ref|YP_002449089.1| transcription-repair coupling factor [Bacillus cereus AH820]
 gi|225862106|ref|YP_002747484.1| transcription-repair coupling factor [Bacillus cereus 03BB102]
 gi|228925307|ref|ZP_04088404.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931556|ref|ZP_04094463.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228943860|ref|ZP_04106246.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229089185|ref|ZP_04220467.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-42]
 gi|229119716|ref|ZP_04248978.1| Transcription-repair-coupling factor [Bacillus cereus 95/8201]
 gi|229182448|ref|ZP_04309700.1| Transcription-repair-coupling factor [Bacillus cereus BGSC 6E1]
 gi|301051789|ref|YP_003790000.1| transcription-repair coupling factor [Bacillus anthracis CI]
 gi|195990975|gb|EDX54946.1| transcription-repair coupling factor [Bacillus cereus W]
 gi|196021779|gb|EDX60473.1| transcription-repair coupling factor [Bacillus cereus 03BB108]
 gi|196027376|gb|EDX65993.1| transcription-repair coupling factor [Bacillus cereus NVH0597-99]
 gi|218538935|gb|ACK91333.1| transcription-repair coupling factor [Bacillus cereus AH820]
 gi|225786910|gb|ACO27127.1| transcription-repair coupling factor [Bacillus cereus 03BB102]
 gi|228601028|gb|EEK58596.1| Transcription-repair-coupling factor [Bacillus cereus BGSC 6E1]
 gi|228663741|gb|EEL19319.1| Transcription-repair-coupling factor [Bacillus cereus 95/8201]
 gi|228694148|gb|EEL47829.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-42]
 gi|228815817|gb|EEM62052.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228828108|gb|EEM73835.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228834354|gb|EEM79894.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|300373958|gb|ADK02862.1| transcription-repair coupling factor [Bacillus cereus biovar
           anthracis str. CI]
          Length = 1176

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/320 (19%), Positives = 144/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L      I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  ++    L +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPMKELWKQRQIEISLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K+++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +L +Y+PED ++ +DE
Sbjct: 292 NEPASLIDYLPEDGVVILDE 311



 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|318041677|ref|ZP_07973633.1| transcription-repair coupling factor [Synechococcus sp. CB0101]
          Length = 1185

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/343 (20%), Positives = 144/343 (41%), Gaps = 41/343 (11%)

Query: 174 LGVTGSGK---TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L ++G+G+       + +  A + P +V+ P    A +  +  +     +A  Y  S   
Sbjct: 29  LRMSGAGRGARALVSSALATAAEAPLLVVVPTLEEAGRWAALLELMGWSSAQLYPTSEGS 88

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
            Y+P  + P ++    +   ++E +D  R ++          IV +  +    +    + 
Sbjct: 89  PYEP--FDPTSEITWGQLQVLSELLDEERAASM--------AIVATERALQPHLPPPAAL 138

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
               + L+ GD+V+ +EL  +L +  Y+R       G++   GD +++FP   E +  R+
Sbjct: 139 KAQCLSLRKGDTVDLEELGETLTRLGYERVTSIEQEGSWSRRGDIVDVFPVSAE-LPVRL 197

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             FG ++E++ EF P + + +  +E +++  + +     P +  A++    +   +L+  
Sbjct: 198 EFFGEELEKLREFDPASQRSLDPIEVVRLTPSGY----GPLIADALRDGMPDGLDQLLSP 253

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
           E   +LLE                  G+ + +    R L G    E P +L  Y+P ++L
Sbjct: 254 EALEQLLEG-----------------GTPEGM----RRLMGLAWSE-PASLLSYLPANTL 291

Query: 471 LFVDESHVTIPQISGMY-RGDFHRKATLAEYGFRLPSCMDNRP 512
           + VDE    +      +   + H     AE G  LP+ +   P
Sbjct: 292 IAVDERRHCLAHGQQWFDHANEHHAEVCAELGVELPAVLHRTP 334


>gi|313625455|gb|EFR95204.1| transcription-repair coupling factor [Listeria innocua FSL J1-023]
          Length = 899

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 137/321 (42%), Gaps = 25/321 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKSQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  IDVDKLFLY-------------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    + +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIEL-EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           +  +++++ + L EL E E +    + LE+    DLE L    S    + + +Y+    P
Sbjct: 240 VTRLEKKMTLTLNELKENEDKQXXVENLEE----DLEKLR---SGVKPDMFFKYIGLAYP 292

Query: 455 GEPPPTLFEYIPEDSLLFVDE 475
              P +LF+Y+P+++ + +DE
Sbjct: 293 D--PASLFDYLPKNTAILLDE 311


>gi|295102722|emb|CBL00267.1| ATP-dependent DNA helicase RecG [Faecalibacterium prausnitzii L2-6]
          Length = 686

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 14/141 (9%)

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE-YLYERNIRVRYMHSEVKT 618
           EI S R QV  V   I  A   GL  +     K   ED+ + YL +R  RV  MH ++K 
Sbjct: 467 EIDSGR-QVYIVCPAIEDAGGSGLNAV-----KSYYEDIAKAYLPDR--RVGLMHGKLKP 518

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            E+ E++ D + G+ D LV   ++  G+D+P   ++ I +A++ G     ++L Q  GR 
Sbjct: 519 KEKAEVMDDFKSGRLDALVSTTVIEVGVDVPNATVMVIENAERYGL----SALHQLRGRV 574

Query: 679 ARN-VNSKVILYADTITKSIQ 698
            R    S   L +D  ++S+Q
Sbjct: 575 GRGAAESWCFLVSDNASESVQ 595


>gi|329120997|ref|ZP_08249628.1| primosome assembly protein PriA [Dialister micraerophilus DSM
           19965]
 gi|327471159|gb|EGF16613.1| primosome assembly protein PriA [Dialister micraerophilus DSM
           19965]
          Length = 787

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)

Query: 568 VEDVYDEINLAAQQGLRILLTVL-TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            E  +D I +  +   +++     T+R+ +++ +YL E   +   + S  K     +I+ 
Sbjct: 532 CEKFFDVITICPKCSNKLIYKGFGTQRIEDEIHKYLPELKCKRLDIDSISKKGSSAQILN 591

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDAD----KEGFLRSK---TSLIQTIGRAA 679
           D R G FDVL+G  L+ +G DIP+   V IL+AD      G+L ++    +L Q  GRA 
Sbjct: 592 DFRSGLFDVLLGTQLVTKGHDIPDVKTVGILNADGMLNTPGYLSAENTFNTLTQCAGRAG 651

Query: 680 RN 681
           RN
Sbjct: 652 RN 653


>gi|242809985|ref|XP_002485488.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218716113|gb|EED15535.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1420

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 7/79 (8%)

Query: 614 SEVKTL-ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           +E+ TL E+ +++ +LR+GK +VL+  N+L EG+D+P C +V   D  K+  LR   S I
Sbjct: 440 TELSTLVEQKDVLTELRVGKTNVLIATNVLEEGIDVPACNIVICFDPPKD--LR---SFI 494

Query: 673 QTIGRAARNVNSKVILYAD 691
           Q  GR AR+  S+++L+ D
Sbjct: 495 QRRGR-ARDRQSRLVLFID 512


>gi|118475824|ref|YP_892975.1| transcription-repair coupling factor [Bacillus thuringiensis str.
           Al Hakam]
 gi|118415049|gb|ABK83468.1| transcription-repair coupling factor [Bacillus thuringiensis str.
           Al Hakam]
          Length = 1207

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/320 (19%), Positives = 144/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 45  IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 104

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L      I+V+
Sbjct: 105 LGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA 151

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  ++    L +L    Y+R+ +    G F + G  
Sbjct: 152 PVAGLRRFLPMKELWKQRQIEISLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 211

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 212 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 270

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K+++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 271 IKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 322

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +L +Y+PED ++ +DE
Sbjct: 323 NEPASLIDYLPEDGVVILDE 342



 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 889 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 947

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 948 ---SQLYQLRGRVGRS 960


>gi|229170904|ref|ZP_04298507.1| Transcription-repair-coupling factor [Bacillus cereus MM3]
 gi|228612570|gb|EEK69789.1| Transcription-repair-coupling factor [Bacillus cereus MM3]
          Length = 1176

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/320 (18%), Positives = 146/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  ++    L +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +++++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IEHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PED ++ +DE
Sbjct: 292 KEPASLIDYLPEDGIVVLDE 311



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|87125795|ref|ZP_01081638.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9917]
 gi|86166604|gb|EAQ67868.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9917]
          Length = 1184

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 106/209 (50%), Gaps = 28/209 (13%)

Query: 268 ERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
           +R D  +V++  C+   +   ++ ++    L+ GD+V+ +EL S L +  Y+R       
Sbjct: 115 DRPDLAIVATERCLQPHLPPPQALAERCRSLRKGDTVDLEELASCLSQLGYERVSSIDQE 174

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           GT+   GD ++IFP   E +  R+  FG+D++++ EF P + + +  +E++++       
Sbjct: 175 GTWSRRGDIVDIFPVSSE-LPVRLEFFGDDLDKLREFDPASQRSLDAIESLRLT------ 227

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
              PT  + +  I E+L+ R+ +   EG LL  Q L+       E+LE  G+ + +    
Sbjct: 228 ---PTGFSPL--IAEQLRERMPD-GLEG-LLSEQALQ-------ELLE-GGTPEGM---- 268

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           R L G    E P +L +Y+P    + +DE
Sbjct: 269 RRLMGLA-WEAPASLLDYLPAHCCVAIDE 296


>gi|253698851|ref|YP_003020040.1| transcription-repair coupling factor [Geobacter sp. M21]
 gi|251773701|gb|ACT16282.1| transcription-repair coupling factor [Geobacter sp. M21]
          Length = 1157

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 14/194 (7%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF-FPHNAVEYFVSYYDYYQ 233
           GV GS   + +++++     P +V+  ++  A +L  E + F   H AV  F  + D   
Sbjct: 27  GVDGSAPAYLLSRLMTESGPPLVVITADQESADELARELRFFSCSHGAVLPFPGW-DVTP 85

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
            EA  P  D   E+ +++   +D       R+       +VV   + +  +   E+   +
Sbjct: 86  FEAASPHPDLVGERLNALVRLLD----GGARA-------VVVPLAAALQRVIPRETLGGV 134

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
              L  G+ +E++ L+  LVK  Y    I   RG+F V G  ++IFP   E    R+  F
Sbjct: 135 CQYLVAGEELERETLVEKLVKLGYSHVPIVEDRGSFSVRGGILDIFPPDQER-PVRIEFF 193

Query: 354 GNDIEEISEFYPLT 367
           G+ +E +  F P+T
Sbjct: 194 GDLVETMRLFDPVT 207


>gi|172056088|ref|YP_001812548.1| transcription-repair coupling factor [Exiguobacterium sibiricum
           255-15]
 gi|171988609|gb|ACB59531.1| transcription-repair coupling factor [Exiguobacterium sibiricum
           255-15]
          Length = 1171

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 131/317 (41%), Gaps = 47/317 (14%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV------EY 224
           QL+ G+  SGK   +A + +  ++  +++  N   A +LY +     P   V      E 
Sbjct: 28  QLITGLMNSGKALFIAGIYQETKKRFVIVTHNMFQAQKLYDDLIELVPEQDVMLYPVDET 87

Query: 225 FVSYYDY-YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
             +   Y   PE    R +T               RH   R L   +  +++  V     
Sbjct: 88  LAAELSYGASPELRATRIET---------------RH---RLLTTDDGILIIPLVGLRRY 129

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           + +   +     ++K GD +   + +  LV   Y+R       G F V G  I+++P  +
Sbjct: 130 VPTASDFLDHTKRIKPGDVLSIPDFIQELVDAGYERTATVTTPGEFAVRGSIIDLYPLTV 189

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNV-ETIKIYANSHYVTPRPTLNTAMKYIKEE 402
           E   +R+ +F  +++ I  F   T + +  + E +   A  H+ T R  L TA   ++  
Sbjct: 190 ER-PYRLDLFDEEVDSIYTFDAETQRSLGVIAEALVPPATEHFAT-REGLKTAGDKLR-- 245

Query: 403 LKMRLIELEKE----GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
              RL +  KE      +L A  LE+ I YD+E+LE     + +  Y+  L         
Sbjct: 246 ---RLYDATKERVQSTEVLAA--LEEGIAYDVEVLEGGDRPKQLAKYAPLLY-------E 293

Query: 459 PTLFEYIPEDSLLFVDE 475
            TL + I +D++L VDE
Sbjct: 294 TTLLDDI-KDAVLIVDE 309


>gi|313891976|ref|ZP_07825577.1| primosomal protein N' [Dialister microaerophilus UPII 345-E]
 gi|313119619|gb|EFR42810.1| primosomal protein N' [Dialister microaerophilus UPII 345-E]
          Length = 787

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)

Query: 568 VEDVYDEINLAAQQGLRILLTVL-TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            E  +D I +  +   +++     T+R+ +++ +YL E   +   + S  K     +I+ 
Sbjct: 532 CEKFFDVITICPKCNNKLIYKGFGTQRIEDEIHKYLPELKCKRLDIDSISKKGSSAQILN 591

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDAD----KEGFLRSK---TSLIQTIGRAA 679
           D R G FDVL+G  L+ +G DIP+   V IL+AD      G+L ++    +L Q  GRA 
Sbjct: 592 DFRSGLFDVLLGTQLVTKGHDIPDVKTVGILNADGMLNTPGYLSAENTFNTLTQCAGRAG 651

Query: 680 RN 681
           RN
Sbjct: 652 RN 653


>gi|254584210|ref|XP_002497673.1| ZYRO0F10934p [Zygosaccharomyces rouxii]
 gi|238940566|emb|CAR28740.1| ZYRO0F10934p [Zygosaccharomyces rouxii]
          Length = 603

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L+A  G   L+ V TKRMA+ LT++L  +N R   +H +    ER   +   + GK D+L
Sbjct: 385 LSASSGGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALGSFKTGKADLL 444

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP   +  +++ D  G +      +  IGR  R  N+ +
Sbjct: 445 VATAVAARGLDIPN--VTHVINYDLPGDV---DDYVHRIGRTGRAGNTGL 489


>gi|313902509|ref|ZP_07835910.1| transcription-repair coupling factor [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467195|gb|EFR62708.1| transcription-repair coupling factor [Thermaerobacter subterraneus
           DSM 13965]
          Length = 1196

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 153/381 (40%), Gaps = 52/381 (13%)

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           E ++  +++L+ G  +++ +LL+ LV   Y+R +     G   V G  ++++P   E V 
Sbjct: 141 ERWAAGLIELEPGQVMDRDDLLTRLVAAGYQRAEQVDRPGELAVRGGIVDVYPPAGEPV- 199

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ +  F P T +    +E +++      V    +    +  +  EL   L
Sbjct: 200 -RIEFFGDEIDSLRRFDPGTQRSTGTLERVRLAPARELVLDEASWRRGLAALAAELDS-L 257

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP-PTLFEYIP 466
            +  +  R   A++L  R+  DL  LE   S +  E+Y  +       EP   TL +Y P
Sbjct: 258 RDQTRHRRGGAARQLLDRLEQDLVRLEAERSIELAEHYLPFF------EPEMATLLDYAP 311

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS----CMDNRPLRFEEWNCL- 521
             +L    E       ++   R    R+A L   G  LP+     +D   L    W  L 
Sbjct: 312 GPALAVWVEPRSLEEAVADRERQWQERQADLLSRGEILPAQAALYLDEPAL----WGALA 367

Query: 522 -RPTTI--VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA---RTQVEDVYDEI 575
            RP     V++  PG       QG    Q+         PV  R A     Q +   +E+
Sbjct: 368 SRPVLYLSVLARAPG-------QGPEPRQVY--------PVTARPAPMFHGQWDLFEEEV 412

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +Q  R+LL       A  L + L + ++  R        +ER+ +         +V
Sbjct: 413 RTWQRQQYRVLLVAGDGDRAGRLRQALLDADVAAR-------QVERLTLP-----APGEV 460

Query: 636 LVGINLLREGLDIPECGLVAI 656
           LV    L EG ++P    V +
Sbjct: 461 LVAPAALSEGFEVPALRWVVL 481



 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R    H ++   E   ++ D   GK DVLV   ++  GLDIP    + + DAD+ G    
Sbjct: 875 RFAVAHGQMAEGELERVMVDFMEGKADVLVCTTIIESGLDIPNVNTLIVEDADRMGL--- 931

Query: 668 KTSLIQTIGRAARN 681
              L Q  GR  R+
Sbjct: 932 -AQLYQLRGRVGRS 944


>gi|332671526|ref|YP_004454534.1| transcription-repair coupling factor [Cellulomonas fimi ATCC 484]
 gi|332340564|gb|AEE47147.1| transcription-repair coupling factor [Cellulomonas fimi ATCC 484]
          Length = 1222

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 122/288 (42%), Gaps = 48/288 (16%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RP +V+      A +L +  + + P + V    ++ +    E   PR+DT   + +    
Sbjct: 59  RPLVVVTATGRDADELAAALRCYLPEDVVAVLPAW-ETLPHERLSPRSDTVARRLAVFR- 116

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVS----CIYGIGSVESYSQMIVQLKIGDSVEQKELL 309
              R+ H            +V+   +     + G+G +E      V + +GD V+  +L 
Sbjct: 117 ---RLAHPGQDGPTGPVRVLVLPVRALLQPVVEGLGELEP-----VAVSVGDRVDLDDLT 168

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369
             LV   Y+R D+   RG F V G  +++FP   +D   RV ++G D+EEI  F      
Sbjct: 169 ERLVAAAYQRVDMVEKRGEFAVRGGILDVFPP-TDDHPLRVELWGEDVEEIRWF------ 221

Query: 370 KIRNVETIKIYANSHYVTP-RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
            + +  ++++  +  +  P R  L T      +E++ R            A  L +R+  
Sbjct: 222 SVADQRSLEVAQHGLWAPPCREILLT------DEVRAR------------AASLAERLPG 263

Query: 429 DLEMLETTG---SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
            ++ML+      + + +E+ +  L  R        + + +P+D+LL V
Sbjct: 264 AVDMLDKLAQGIAVEGMESLAPALVERM-----VPVLDLVPDDALLVV 306


>gi|228963154|ref|ZP_04124324.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228796539|gb|EEM43977.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 1067

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 99/188 (52%), Gaps = 9/188 (4%)

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + G  ++I+P   E++ 
Sbjct: 24  ELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGILDIYPL-TEELP 82

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
           +R+  F  +++ I  F     +     E++K    + ++  +  L + +++++E L   +
Sbjct: 83  FRIEFFDTEVDSIRLFDVDEQRSQGKKESVKFGPATEFLFSQEELKSGIQHLEEGLTKTM 142

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
            +L  +   L+   LE  +++++EML+   + QSIE   +YL+     + P +L +Y+PE
Sbjct: 143 QKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY--KEPASLIDYLPE 194

Query: 468 DSLLFVDE 475
           D ++ +DE
Sbjct: 195 DGVVILDE 202



 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 749 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 807

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 808 ---SQLYQLRGRVGRS 820


>gi|164688875|ref|ZP_02212903.1| hypothetical protein CLOBAR_02523 [Clostridium bartlettii DSM
           16795]
 gi|164602079|gb|EDQ95544.1| hypothetical protein CLOBAR_02523 [Clostridium bartlettii DSM
           16795]
          Length = 1131

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 140/323 (43%), Gaps = 46/323 (14%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +++  I  R+    L G+    K      + + + RP + +A + + A ++Y+E + F+ 
Sbjct: 17  EIINSICERKGALQLNGLLDMQKPHITYSIFKELARPTLFIANSDLEAKKVYNELR-FYT 75

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
            + VEY  +       E Y    D    K+ S  E+  ++R      L ++   IVV+SV
Sbjct: 76  KDKVEYLGT------DEIYFYHLDA---KDRS--EEAKKLR--VLLKLAKKQKTIVVTSV 122

Query: 279 SCIYGIGSVESYSQMIVQL------KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
             I     +  Y    V L      KIGD +  +EL  +LV+  Y+R       G F + 
Sbjct: 123 DAI-----LRKYIPKKVLLDNIFTYKIGDIINLEELSQNLVRLGYERVSRIEGLGQFSIR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  I+++     +   R+ +F ++I+ I  F   + + I  ++ + I  +  ++ P  T 
Sbjct: 178 GGIIDVYSLEYTN-PIRIELFDDEIDSIRTFDVFSQKSIDKIKKVVITPSREFIYPEDT- 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            +A++ IKEE                 +  +  +  ++E +      Q +ENY  YL   
Sbjct: 236 TSAVEKIKEETN---------------KYTDDDVLKNIENISDRTYFQGVENYIDYLY-- 278

Query: 453 NPGEPPPTLFEYIPEDSLLFVDE 475
              +   ++F Y+P++ ++ + +
Sbjct: 279 --DDQNKSIFSYLPDNGIVVMSD 299


>gi|294792288|ref|ZP_06757436.1| transcription-repair coupling factor [Veillonella sp. 6_1_27]
 gi|294457518|gb|EFG25880.1| transcription-repair coupling factor [Veillonella sp. 6_1_27]
          Length = 1098

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 112/249 (44%), Gaps = 42/249 (16%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           R+   ++ G++GS K+F +++   A +++P +++  +K        +   F+P+  V+ F
Sbjct: 24  RKGKSVIYGLSGSQKSFLLSQAFSAGLKKPVVIVVHDKDHKEMWERDLAFFWPNVPVQSF 83

Query: 226 VSYYDYYQPEAYVPRTD--TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
                        P TD   +     S+  Q  +MR  A   LL   +  VV        
Sbjct: 84  -------------PITDHVDFTTVARSLENQGAQMRALA---LLAWQEPAVV-------- 119

Query: 284 IGSVESYSQMIV----------QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           I + E  +Q +V             + D++E+   L  LV   Y+R D    RG F V G
Sbjct: 120 IANAEEVTQYVVSPHYLKGQSLHFALNDAIERDVALEQLVTIGYERVDQVEQRGHFAVRG 179

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D ++I+P +  D   R+  FG++I+ +  F+ +  Q  R++E I+ Y  + +   +   +
Sbjct: 180 DILDIYPVN-SDHPIRIEFFGDEIDTL-RFFSVENQ--RSIEQIESYTVTPFFLGKSDAD 235

Query: 394 -TAMKYIKE 401
            T + Y+KE
Sbjct: 236 STLLSYVKE 244



 Score = 40.8 bits (94), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 31/59 (52%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            +R    H ++   +  EI+ D   G +DVL+  +++  GLDIP    + I DAD+ G 
Sbjct: 783 GLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGL 841


>gi|61657474|emb|CAI44386.1| primosomal protein N [Thermotoga sp. KOL6]
          Length = 736

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 12/123 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEV--KTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           T+++ ++L ++  ++  +V+ +  EV    +E  + I DL  G+ D+LVG  ++ +  ++
Sbjct: 506 TEKVEKELQKFFPDK--KVKRVDREVVEDIMEMEDYIDDLTAGEIDILVGTKMITKSFNV 563

Query: 649 PECGLVAILDADKEGF-------LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-A 700
           PE GLV +LD D   F       LR+   ++Q +GRA+RN   + IL      +S+ + A
Sbjct: 564 PEVGLVCVLDVDSLVFLPDFSASLRTFQLIVQALGRASRNEEGRAILQTYNPDESVIMRA 623

Query: 701 IDE 703
           +DE
Sbjct: 624 VDE 626


>gi|87302159|ref|ZP_01084984.1| transcription-repair coupling factor [Synechococcus sp. WH 5701]
 gi|87283084|gb|EAQ75040.1| transcription-repair coupling factor [Synechococcus sp. WH 5701]
          Length = 1187

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 130/303 (42%), Gaps = 36/303 (11%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G   + +    + +     RP +V+ P    A +  +  +      A  Y  S    Y
Sbjct: 31  LSGAGRAARALITSALARRGGRPLVVIVPTLEEAGRWAALLELMGWPTAQLYPTSEGSPY 90

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           +P  + P ++    +   + E ID     + RS       IV +  +    +    + + 
Sbjct: 91  EP--FDPTSEITWGQLQVLGELID----GSGRSW---AGAIVATERALQPHLPPPAALAA 141

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             + L+ G SV+ +EL  +L +  Y+R       G++   GD +++FP   E +  R+  
Sbjct: 142 RCLSLRKGSSVDLEELADTLTRLGYERVPTIEQEGSWSRRGDIVDVFPVSAE-LPVRLEF 200

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG D+E++ EF P T + +  +E +++    +     P +  A+   +E +   L E   
Sbjct: 201 FGEDLEKLREFDPATQRSLDAIEAVRLTPTGYG----PLIADAL---RESMPEALTE--- 250

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
              LL ++ LEQ       +LE  G+ + +    R L G    E P +L +Y+P  +L+ 
Sbjct: 251 ---LLASEALEQ-------LLE-GGTPEGM----RRLMGLA-WEQPASLLDYLPGATLIA 294

Query: 473 VDE 475
           VDE
Sbjct: 295 VDE 297


>gi|116871596|ref|YP_848377.1| transcription-repair coupling factor [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|116740474|emb|CAK19594.1| transcription-repair coupling factor [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 1179

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 138/320 (43%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKSQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V+    Y          P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MD---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    + +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIIIDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ +++++ + L EL KE    + Q L + +  DLE L    S    + + +Y+    P 
Sbjct: 240 VQRLEKKMMLTLNEL-KENE--DKQALVENLEEDLEKLR---SGTKPDMFFKYIGLAYP- 292

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +LF+Y+P+++ + +DE
Sbjct: 293 -DPASLFDYLPKNTAILLDE 311



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H ++   E   +I     G+FDVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 859 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917

Query: 666 RSKTSLIQTIGRAAR 680
              + L Q  GR  R
Sbjct: 918 ---SQLYQLRGRVGR 929


>gi|328865213|gb|EGG13599.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 760

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 21/126 (16%)

Query: 583 LRILLTVLTKRMAEDLTEYLYE-RNIRVRYMHSEVKTL--------------ERIEIIRD 627
            R +L V T+  A  L E L    N   RY  ++  T+              ++ E++  
Sbjct: 520 FRAILFVKTRDSAHQLGEILNNISNKSTRYSFTKCVTVVGHGSNTDGGMSTSKQKEVVEA 579

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            R GK +V+V  N+L EGLD+PEC LV  +DA       + T+LIQ+ GR AR+ NS+ +
Sbjct: 580 FRTGKANVVVTTNVLEEGLDVPECNLVIRIDAPS-----TVTALIQSRGR-ARHRNSEFV 633

Query: 688 LYADTI 693
               TI
Sbjct: 634 AIIKTI 639


>gi|315222838|ref|ZP_07864723.1| transcription-repair coupling factor [Streptococcus anginosus
           F0211]
 gi|315188074|gb|EFU21804.1| transcription-repair coupling factor [Streptococcus anginosus
           F0211]
          Length = 1168

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 13/235 (5%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           S+   QLL+G++ S K  TMA  +E   +  +++      A +L S+         V  F
Sbjct: 25  SKSTRQLLMGLSSSTKAVTMASCVEENHK-ILILTSTYSEAERLSSDLIELLGEEKVYTF 83

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
           ++  D      +V  +    EK  S  E +D +  S     L     IV  + S ++   
Sbjct: 84  LA--DDTPLAEFVFSSQ---EKIFSRLEALDFLLDSQQSGFL-----IVNVAASQLFLPD 133

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            V +++   + LKIG   E K+L+  L    YK+      +G F + GD ++IF      
Sbjct: 134 PV-NFNSAYIDLKIGQEYELKDLIHQLSNSGYKQVSQVFNQGEFSLRGDILDIFERS-SQ 191

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
           + +RV  FG++++ I  F P     I+NVE + I+  +  +  +    +A K I+
Sbjct: 192 IPFRVEFFGDEVDGIRLFNPENQISIQNVEHVHIHPATDIIFTKADYKSAQKKIE 246


>gi|229027900|ref|ZP_04184055.1| Transcription-repair-coupling factor [Bacillus cereus AH1271]
 gi|228733414|gb|EEL84241.1| Transcription-repair-coupling factor [Bacillus cereus AH1271]
          Length = 1176

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/320 (19%), Positives = 144/320 (45%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ +    
Sbjct: 14  IQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDLVAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  ++    L +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L + 
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K ++E L   + +L  +   L+   LE  +++++EML+   + QSIE   +YL+     
Sbjct: 240 IKRLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +L +Y+PED ++ +DE
Sbjct: 292 NEPASLIDYLPEDGIVVLDE 311



 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 858 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 916

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 917 ---SQLYQLRGRVGRS 929


>gi|324990137|gb|EGC22075.1| DNA helicase RecG [Streptococcus sanguinis SK353]
          Length = 671

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 60/104 (57%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+LT Y + R  +V  +H ++K+ E+  I++D + G+ D+LV   ++  G+++P   +
Sbjct: 484 LEEELTAY-FGRQTQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R N  S  +L A+  T+S
Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGNKQSYAVLVANPKTES 582


>gi|291561352|emb|CBL40151.1| transcription-repair coupling factor [butyrate-producing bacterium
           SS3/4]
          Length = 1201

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/223 (19%), Positives = 102/223 (45%), Gaps = 3/223 (1%)

Query: 229 YDYYQPEAYV-PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGS 286
           + Y++P  ++ P  D            + R R    + LLE    +VV++V  +   +  
Sbjct: 70  FSYFEPNTWLYPARDLLFYSSDIHGNLLTRQRMQVFKHLLEDEGGVVVTTVDGLMDHLLP 129

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           +    +  + + +G +++ +E+   L    Y+R       G F V G  +++FP   E+V
Sbjct: 130 LSRIKESCLNIMVGQTLDMEEIKHLLTGMGYERMGQVDGMGQFSVRGGILDVFPL-TEEV 188

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ ++G++++ I  F   + + I+ ++ + IY  +  +  +  +   +  ++ + K +
Sbjct: 189 PVRIELWGDEVDSIRSFDAESQRSIQQMDEVTIYPAAELILTKEHIEEGILRLEADEKKQ 248

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
                 + +  EAQR+ + +   +E L+     Q+++ Y RY 
Sbjct: 249 EKAFRDQKKPEEAQRIRRAVGELVESLKEGFDVQTLDAYIRYF 291



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V + H ++   +  +I+ D   G+ DVLV   ++  GLDIP    + I DAD+ G     
Sbjct: 888 VAFAHGQMNEHQLEKIMLDFINGEIDVLVSTTIIETGLDIPNANTMIIQDADRLGL---- 943

Query: 669 TSLIQTIGRAARN 681
           + L Q  GR  R+
Sbjct: 944 SQLYQIRGRIGRS 956


>gi|162456478|ref|YP_001618845.1| helicase-related protein [Sorangium cellulosum 'So ce 56']
 gi|161167060|emb|CAN98365.1| helicase-related protein [Sorangium cellulosum 'So ce 56']
          Length = 808

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 5/123 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             G R L+   + R A    ++L  R +R+  +HS  ++  R E + DL  GK D L  +
Sbjct: 569 HPGERTLVFCCSIRHAHHACDFLAARGVRIAAVHSGPESAPREEALADLVAGKLDALCAV 628

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +L  EG+D+P    V +L   +     S    +Q +GR  R  + K  L       + ++
Sbjct: 629 DLFNEGIDLPNVDRVVMLRPTE-----SPVVFLQQLGRGLRVADGKARLTVLDFVGNHRV 683

Query: 700 AID 702
            ID
Sbjct: 684 FID 686


>gi|220912069|ref|YP_002487378.1| transcription-repair coupling factor [Arthrobacter chlorophenolicus
           A6]
 gi|219858947|gb|ACL39289.1| transcription-repair coupling factor [Arthrobacter chlorophenolicus
           A6]
          Length = 1220

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 10/171 (5%)

Query: 195 PAIVMAPNKIL--AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           P +V+A       A  L +  + + P ++V  F S+ +    E   PR+DT + +  S+ 
Sbjct: 77  PGVVLAVTATGREAEDLAAALRAYLPADSVAEFPSW-ETLPHERLSPRSDT-VGRRLSVL 134

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
            ++     S    L      +       + G+G +     + V LK+G  V   +++ SL
Sbjct: 135 RRLAHPESSTAERLRVVVAPVRAVVQPVVAGLGDL-----VPVTLKVGQDVPFTDVVRSL 189

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
               Y R D+   RG F V G  I++FP   ED   RV  FG++++++  F
Sbjct: 190 ADAAYARVDMVTHRGEFAVRGGIIDVFPP-TEDHPIRVEFFGDEVDQMRWF 239


>gi|323340718|ref|ZP_08080970.1| DNA helicase RecG [Lactobacillus ruminis ATCC 25644]
 gi|323091841|gb|EFZ34461.1| DNA helicase RecG [Lactobacillus ruminis ATCC 25644]
          Length = 680

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y    +V  +H  +K+ E+ EI++D + GK+D+LV   ++  G+D+P   ++ ILDAD+ 
Sbjct: 497 YAPCYKVGLLHGRMKSDEKDEIMKDFKEGKYDILVSTTVVEVGVDVPNATVMVILDADRF 556

Query: 663 GFLRSKTSLIQTIGRAARNVN-SKVILYADTIT 694
           G       L Q  GR  R    S  IL AD  T
Sbjct: 557 GL----AQLHQLRGRVGRGSKASYCILCADPKT 585


>gi|260437494|ref|ZP_05791310.1| transcription-repair coupling factor [Butyrivibrio crossotus DSM
           2876]
 gi|292810127|gb|EFF69332.1| transcription-repair coupling factor [Butyrivibrio crossotus DSM
           2876]
          Length = 1177

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/297 (18%), Positives = 128/297 (43%), Gaps = 20/297 (6%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            ++  +  +  V +  G     K + + K+ E   +  I+    +I A +LY +++    
Sbjct: 16  NIIDDLKKKGNVPVAFGCVDQQKPYFIYKITEKFNKKLIITG-TEIRARELYEDYR---- 70

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
             A++    YY         P  D         + ++ R R      L+   +  +++++
Sbjct: 71  --AIDKNTYYY---------PAKDFIFYSADIRSNEVVRERLEVINHLINDREATIITTI 119

Query: 279 -SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             C+  +   + + +  + +K GD ++ K L   LV   Y+        G F + G  I+
Sbjct: 120 DGCMDKLVPQDIFRKNTINIKTGDDIDIKGLSERLVNAGYENAGQTEHSGQFAIRGGIID 179

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP ++E+   R+ ++  +++ +  F   + + + N+E I I+  +  +    TL + +K
Sbjct: 180 IFPVNMEN-PCRIELWDTEVDAMRLFDAESQRSVENIEEIDIFPATELLID-DTLASGIK 237

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
            I+++       L KE ++ E+  +++ +    E L        +++Y +Y   +NP
Sbjct: 238 SIEKDAAKYSEALNKEAKITESNLIKKNVEELKEKLFVLKDRSGLDSYVKYFI-KNP 293



 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V + H ++   E  +I+ D   G  DVLV   ++  GLDIP    + I DA+K G     
Sbjct: 863 VAFAHGQMSERELEKIMMDFINGDIDVLVSTTIIETGLDIPNVNTIIIHDANKYGL---- 918

Query: 669 TSLIQTIGRAAR 680
           + L Q  GR  R
Sbjct: 919 SQLYQLRGRVGR 930


>gi|82750210|ref|YP_415951.1| transcription-repair coupling factor [Staphylococcus aureus RF122]
 gi|123768536|sp|Q2YVY2|MFD_STAAB RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|82655741|emb|CAI80140.1| transcription-repair coupling factor [Staphylococcus aureus RF122]
          Length = 1168

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 96/194 (49%), Gaps = 15/194 (7%)

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           + SVE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   
Sbjct: 127 LTSVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIG 186

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E +  R+ +F  +I+ I +F   T +   N+E + I   S Y+     +    +++KEEL
Sbjct: 187 EPI--RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVI----RHLKEEL 240

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTL 461
           K          ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+
Sbjct: 241 KTAY--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTI 293

Query: 462 FEYIPEDSLLFVDE 475
            +Y  +D+++ VDE
Sbjct: 294 IDYFQKDAIIAVDE 307


>gi|225575737|ref|ZP_03784347.1| hypothetical protein RUMHYD_03830 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037050|gb|EEG47296.1| hypothetical protein RUMHYD_03830 [Blautia hydrogenotrophica DSM
           10507]
          Length = 1044

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 5/183 (2%)

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQMIV 295
           Y P  D    +       + + R    R+LLE     VV+SV  C+  +  +    + +V
Sbjct: 9   YYPAKDLLFFQADIHGNLLIKQRMQVVRALLEEESVTVVTSVDGCMDYLMPLGQIKENLV 68

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L    +++ +EL   LV   Y+R       G F V G  ++I+ S  E+  WR+ M+G+
Sbjct: 69  CLNSESTIDLEELSKKLVWLGYERVPQVERSGQFAVRGGILDIY-SLTEENPWRIEMWGD 127

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +++ I  F   + + I N+ETI IY  +  +  +  ++ A  +  E+    L+ L++  R
Sbjct: 128 EVDSIRSFDAYSQRSIENLETITIYPAAERLGEKGMVSFADYFPVEK---TLLILDEPNR 184

Query: 416 LLE 418
           +LE
Sbjct: 185 MLE 187



 Score = 37.4 bits (85), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +++V + H ++   E  +++ +   G+ DVLV   ++  GLDI     + I D+D+ G L
Sbjct: 729 DVQVGFAHGQMSERELEKVMYEFINGELDVLVSTTIIETGLDISNVNTMIIHDSDRYG-L 787

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITK 695
                L   IGR+ R   + ++   ++I K
Sbjct: 788 SQLYQLRGRIGRSNRTAYAFLMYRKNSILK 817


>gi|295108814|emb|CBL22767.1| Transcription-repair coupling factor (superfamily II helicase)
           [Ruminococcus obeum A2-162]
          Length = 693

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 18/186 (9%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A ++  A  LY +++             +YD  +   Y P  D    +       + 
Sbjct: 53  LVIAADEKTAKDLYEDYR-------------FYD--KRVYYYPAKDLLFFQADIHGNLLI 97

Query: 257 RMRHSATRSLLERNDCI-VVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           R R    R+LLER + I VV+S+  C+  +  +E   + ++  +   S++  +L ++LV 
Sbjct: 98  RQRMQVIRALLERQEEITVVTSIDGCMDYLLPLEKIEKQLIHFRNDSSLDMDKLTAALVH 157

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y+R     + G F + G  I+I+ S  E+  WR+ ++G++I+ I  F   + + + N+
Sbjct: 158 MGYERVGQVEMPGQFSIRGGIIDIY-SLTEENPWRIELWGDEIDSIRSFDAQSQRSLENL 216

Query: 375 ETIKIY 380
           + I IY
Sbjct: 217 DEIMIY 222


>gi|58336612|ref|YP_193197.1| transcriptional repair coupling factor [Lactobacillus acidophilus
           NCFM]
 gi|58253929|gb|AAV42166.1| transcriptional repair coupling factor [Lactobacillus acidophilus
           NCFM]
          Length = 1165

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/310 (20%), Positives = 127/310 (40%), Gaps = 33/310 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + ++I  +  P I++  N+  A  LY E         V+ F   
Sbjct: 24  KNSLITGANAGAFSLLLKQIISKLNEPLILVEENENKAQNLYGELSAILDSEQVQIF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRM--RHSATRSLLERNDCIVVSSVSCI-YGIG 285
                        D  I  +++++   D +  R  A   LL +   IV+++   + Y + 
Sbjct: 81  -----------SLDATIATQTAVSSP-DELSSRIQALSFLLSKKAGIVITTPQGLQYKLS 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +   ++Q           E  EL + LV   Y+++ +    G F + GD ++I+P   E+
Sbjct: 129 NPTDFAQAKRVFIPEKEYELTELNNWLVHSGYQKEALVAKPGEFAIRGDILDIYPLDREN 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+  FG++I+ + EF   T +  + ++ ++I A    V     +  A + I++++  
Sbjct: 189 -PVRIEFFGDEIDTVKEFNLATQRSTQEIDLVEITAAQDRVFSSDAIKKAAEKIRKDMA- 246

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                         + ++   T  L+ L+T G  Q+      YL      E P +L +Y+
Sbjct: 247 --------DAPAPEKAVKDHFTVALDNLDTGGLPQNYSFLVDYLI-----EKPSSLLDYL 293

Query: 466 PEDSLLFVDE 475
             +  + +D+
Sbjct: 294 APNGQILIDD 303


>gi|154483284|ref|ZP_02025732.1| hypothetical protein EUBVEN_00985 [Eubacterium ventriosum ATCC
           27560]
 gi|149735794|gb|EDM51680.1| hypothetical protein EUBVEN_00985 [Eubacterium ventriosum ATCC
           27560]
          Length = 1168

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 102/505 (20%), Positives = 203/505 (40%), Gaps = 73/505 (14%)

Query: 176 VTGSGKTFTMAKVIEAMQ---RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           VTG G++  +A  I  +    +  +++  +   A+QLY + K F   + V Y    + ++
Sbjct: 29  VTGCGES-QLAHFINGLSNGYKQKVIVTFSATKASQLYQDLKGF-ADDVVMYPAKDFIFF 86

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYS 291
             + +                 I + R    + ++E +   ++++  + +  I  +E   
Sbjct: 87  SADVH--------------GNLILQQRLEFIQKIVEDKPFTVILTPDAFMDKIMPIEKIK 132

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              +++  G  ++   L S LV+  Y+        G F V G  ++I+ +  ++V +R+ 
Sbjct: 133 NNYLEIAEGSIIQMDALKSKLVQMGYEPVVQIDGPGQFAVRGSIVDIY-TLTDEVPYRID 191

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            + ++++ I  F   + + I N+E++KIY  S Y   +  +   M  I+++L   + +  
Sbjct: 192 FWDDEVDIIKSFEVESQRSIENLESVKIYPASEYSLTKKEIQAGMAKIRQDLDQNVEKFR 251

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
           K+ +  EA RL   +   L  ++   S  ++++Y  Y       +   +L +Y  E+ + 
Sbjct: 252 KDFKTEEANRLRVTVEEFLTNMDINPSQVAVDSYVNYFY-----DNLVSLLDYF-ENPIF 305

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           F+DE      Q++ +        A   + G+ LP   D        W+      I+    
Sbjct: 306 FIDEPKRVTEQLNVVDAEFGDSMANRLQKGYVLPGQTDVI------WD---KNQIIAKID 356

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART-----QVEDVYDEINLAAQQGLRIL 586
            G    E+     + Q I+    VD  VE+ S        + E +  ++    +Q   +L
Sbjct: 357 SG----EKVLFTAIAQKIQGFS-VDDFVEVGSRNVSPYNGKFEILVQDLKKYKEQKYAVL 411

Query: 587 LTVLTK----RMAEDLTEY----LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           L   +K    R+AEDL E+     +E +   + M  EV  ++                  
Sbjct: 412 LVTGSKTRGQRLAEDLREFEISAFFEEDGERQVMPGEVMIIK------------------ 453

Query: 639 INLLREGLDIPECGLVAILDADKEG 663
              LR G   P    VAI D D  G
Sbjct: 454 -GQLRSGFMYPMIKFVAISDTDIFG 477



 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V + H ++   +  EI+ D   G  DVLV   ++  GLDIP    + I DA+K G     
Sbjct: 861 VAFAHGQMSERQLEEIMYDFVNGDIDVLVTTTIIETGLDIPNANTIIIHDAEKMGL---- 916

Query: 669 TSLIQTIGRAARN 681
           + L Q  GR  R+
Sbjct: 917 SQLYQLRGRVGRS 929


>gi|116626459|ref|YP_828615.1| transcription-repair coupling factor [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229621|gb|ABJ88330.1| transcription-repair coupling factor [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 1141

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 9/221 (4%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G+T + K      + ++  RP I++      A  L      FF        +   D Y
Sbjct: 13  LSGLTTTAKALYAVLLWQSSGRPLIIVVDGNKQAEALAEAVNTFFS------LLVADDKY 66

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYS 291
            P+  +P  D    +  S + +I   R     SL  +   I +  V S +  I   + Y 
Sbjct: 67  GPQ-LLPALDVLPMQALSPHAEICEQRAIGLWSLATKRSPITIMPVTSALLRIEPGDFYR 125

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q+ ++L++G+ +  +E+++ L    Y R++   + G + V G  +++FP   +    R+ 
Sbjct: 126 QLALRLRVGEELPLEEVVAHLESIGYTRREPVEMVGEYSVRGGILDVFPPEAQKPV-RID 184

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           +FG+ +E I  F   + + +  VE   +   + Y   RP L
Sbjct: 185 LFGDQVESIRRFDVESQRSVLKVEDCLLLPLTEYQKSRPFL 225



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 7/92 (7%)

Query: 133 NHSKDITF---FQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKT-FTMAK 187
           N+S D  +   F+   ++ P+ DQ  AI+++ + + S + + +LL G  G GKT   M  
Sbjct: 583 NYSSDSNWQREFEDAFEFSPTRDQLTAISEIKRDMESTQPMDRLLCGDVGYGKTEVVMRA 642

Query: 188 VIEAMQ--RPAIVMAPNKILAAQLYSEFKNFF 217
             +A+   +  +V+AP  +LA Q +  FK  F
Sbjct: 643 AFKALGDGKQVVVLAPTTVLAFQHFETFKRRF 674


>gi|282890191|ref|ZP_06298721.1| hypothetical protein pah_c014o047 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499848|gb|EFB42137.1| hypothetical protein pah_c014o047 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 1103

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 2/108 (1%)

Query: 273 IVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           I++S + +C+  +   +++  + + LK G++     L+  L +  Y+R  +   +G F +
Sbjct: 113 IIISGLQACLQSLIPPQNFDSLYLALKKGETFPFDTLIQRLNEMGYRRSAVAADKGEFAI 172

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            G  I+IFP    D  +R+  +G+DIE I  F P+  + I+ VE I+I
Sbjct: 173 RGGIIDIFPVASPD-PFRIEFWGDDIESIRIFDPIGQRSIKTVEHIEI 219


>gi|227903169|ref|ZP_04020974.1| transcriptional repair coupling factor [Lactobacillus acidophilus
           ATCC 4796]
 gi|227868974|gb|EEJ76395.1| transcriptional repair coupling factor [Lactobacillus acidophilus
           ATCC 4796]
          Length = 1165

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/310 (20%), Positives = 127/310 (40%), Gaps = 33/310 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + ++I  +  P I++  N+  A  LY E         V+ F   
Sbjct: 24  KNSLITGANAGAFSLLLKQIISKLNEPLILVEENENKAQNLYGELSAILDSEQVQIF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRM--RHSATRSLLERNDCIVVSSVSCI-YGIG 285
                        D  I  +++++   D +  R  A   LL +   IV+++   + Y + 
Sbjct: 81  -----------SLDATIATQTAVSSP-DELSSRIQALSFLLSKKAGIVITTPQGLQYKLS 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +   ++Q           E  EL + LV   Y+++ +    G F + GD ++I+P   E+
Sbjct: 129 NPTDFAQAKRVFIPEKEYELTELNNWLVHSGYQKEALVAKPGEFAIRGDILDIYPLDREN 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+  FG++I+ + EF   T +  + ++ ++I A    V     +  A + I++++  
Sbjct: 189 -PVRIEFFGDEIDTVKEFNLATQRSTQEIDLVEITAAQDRVFSSDAIKKAAEKIRKDMA- 246

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                         + ++   T  L+ L+T G  Q+      YL      E P +L +Y+
Sbjct: 247 --------DAPAPEKAVKDHFTVALDNLDTGGLPQNYSFLVDYLI-----EKPSSLLDYL 293

Query: 466 PEDSLLFVDE 475
             +  + +D+
Sbjct: 294 APNGQILIDD 303


>gi|221142305|ref|ZP_03566798.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|304380521|ref|ZP_07363197.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|269940074|emb|CBI48450.1| putative transcription-repair coupling factor [Staphylococcus
           aureus subsp. aureus TW20]
 gi|302750394|gb|ADL64571.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340925|gb|EFM06849.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|329313222|gb|AEB87635.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 1168

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   NVE + I   S Y+     ++    ++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNVEEVDITTASDYIITEEVIS----HLKEELKTA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ EY
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIEY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|87160796|ref|YP_493190.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194263|ref|YP_499055.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|161508743|ref|YP_001574402.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253735238|ref|ZP_04869403.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|258452816|ref|ZP_05700811.1| transcription-repair coupling factor [Staphylococcus aureus A5948]
 gi|262049988|ref|ZP_06022847.1| transcription-repair coupling factor [Staphylococcus aureus D30]
 gi|282925578|ref|ZP_06333231.1| transcription-repair coupling factor [Staphylococcus aureus A9765]
 gi|284023512|ref|ZP_06377910.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 132]
 gi|294850363|ref|ZP_06791096.1| transcription-repair coupling factor [Staphylococcus aureus A9754]
 gi|123098062|sp|Q2G0R8|MFD_STAA8 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|123722412|sp|Q2FJD8|MFD_STAA3 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|87126770|gb|ABD21284.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87201821|gb|ABD29631.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|160367552|gb|ABX28523.1| transcription-repair coupling factor helicase [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253726798|gb|EES95527.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257859502|gb|EEV82355.1| transcription-repair coupling factor [Staphylococcus aureus A5948]
 gi|259161923|gb|EEW46506.1| transcription-repair coupling factor [Staphylococcus aureus D30]
 gi|282592482|gb|EFB97494.1| transcription-repair coupling factor [Staphylococcus aureus A9765]
 gi|294822787|gb|EFG39223.1| transcription-repair coupling factor [Staphylococcus aureus A9754]
 gi|315196186|gb|EFU26542.1| transcription-repair coupling factor helicase [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320139410|gb|EFW31288.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144187|gb|EFW35955.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329729764|gb|EGG66161.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 1168

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   NVE + I   S Y+     ++    ++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNVEEVDITTASDYIITEEVIS----HLKEELKTA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ EY
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIEY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|258446110|ref|ZP_05694271.1| transcription-repair coupling factor [Staphylococcus aureus A6300]
 gi|257855087|gb|EEV78029.1| transcription-repair coupling factor [Staphylococcus aureus A6300]
          Length = 1168

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   N+E + I   S Y+     +    +++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVI----RHLKEELKTA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ EY
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIEY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|258407227|ref|ZP_05680372.1| transcription-repair coupling factor [Staphylococcus aureus A9763]
 gi|257841185|gb|EEV65634.1| transcription-repair coupling factor [Staphylococcus aureus A9763]
          Length = 1168

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   N+E + I   S Y+     +    +++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVI----RHLKEELKTA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ EY
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIEY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|323706238|ref|ZP_08117805.1| transcription-repair coupling factor [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534402|gb|EGB24186.1| transcription-repair coupling factor [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 1166

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/308 (17%), Positives = 134/308 (43%), Gaps = 27/308 (8%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           L+ G+T S K      +++ + +  + +  N + A  ++ +  +    +A          
Sbjct: 27  LIYGLTDSQKAHIAHYIVKKLNKKVLFITYNDVEAKLMHEDLSSLLNGDAY--------- 77

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESY 290
                 +P  D    K  + +  I   + +A R +++      V+S+  +   +   + +
Sbjct: 78  -----LIPSRDALFYKVDASSLDITGKKLAAIRRIIDDKPYAFVASIDGVLNKVAPKDVF 132

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            +     KIGD V+  E+ S  V   Y+R  +   +G F + G  I+ F S +E+  +R+
Sbjct: 133 LKYKRNYKIGDKVDLNEISSFFVTMGYERVPMVEGKGQFSIRGGIIDFF-SPMEEEGFRI 191

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F ++I+ I  F   T + + NV+ ++++    ++     +   +  +  ++   + ++
Sbjct: 192 ELFDDEIDSIRSFDTFTQRSLDNVDEVELFPAREFILEDENIKKGLSNLSSKVNSYISKI 251

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP--ED 468
            KE +   A++++++     E++E     ++I N      G   G     L+  +   +D
Sbjct: 252 -KETQSGRAEKIKKKFD---EIMENISETRNITN-----IGELIGFFYDNLYSIVDYFDD 302

Query: 469 SLLFVDES 476
           + + VDE+
Sbjct: 303 AFIIVDEN 310


>gi|148266962|ref|YP_001245905.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393008|ref|YP_001315683.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257794256|ref|ZP_05643235.1| transcription-repair coupling factor [Staphylococcus aureus A9781]
 gi|258420806|ref|ZP_05683742.1| transcription-repair coupling factor [Staphylococcus aureus A9719]
 gi|258448018|ref|ZP_05696148.1| transcription-repair coupling factor [Staphylococcus aureus A6224]
 gi|258453836|ref|ZP_05701809.1| transcription-repair coupling factor [Staphylococcus aureus A5937]
 gi|295407393|ref|ZP_06817190.1| transcription-repair coupling factor [Staphylococcus aureus A8819]
 gi|297246473|ref|ZP_06930313.1| transcription-repair coupling factor [Staphylococcus aureus A8796]
 gi|147740031|gb|ABQ48329.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149945460|gb|ABR51396.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257788228|gb|EEV26568.1| transcription-repair coupling factor [Staphylococcus aureus A9781]
 gi|257843198|gb|EEV67611.1| transcription-repair coupling factor [Staphylococcus aureus A9719]
 gi|257858708|gb|EEV81581.1| transcription-repair coupling factor [Staphylococcus aureus A6224]
 gi|257864007|gb|EEV86762.1| transcription-repair coupling factor [Staphylococcus aureus A5937]
 gi|285816202|gb|ADC36689.1| Transcription-repair coupling factor [Staphylococcus aureus
           04-02981]
 gi|294967750|gb|EFG43782.1| transcription-repair coupling factor [Staphylococcus aureus A8819]
 gi|297176660|gb|EFH35922.1| transcription-repair coupling factor [Staphylococcus aureus A8796]
 gi|312828998|emb|CBX33840.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315128631|gb|EFT84634.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329725040|gb|EGG61535.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 1168

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   N+E + I   S Y+     +    +++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVI----RHLKEELKTA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ EY
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIEY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|258429620|ref|ZP_05688294.1| transcription-repair-coupling factor [Staphylococcus aureus A9299]
 gi|257849679|gb|EEV73646.1| transcription-repair-coupling factor [Staphylococcus aureus A9299]
          Length = 1168

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   N+E + I   S Y+     +    +++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVI----RHLKEELKTA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ EY
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIEY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|57650044|ref|YP_185435.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus COL]
 gi|151220678|ref|YP_001331500.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|81859647|sp|Q5HIH2|MFD_STAAC RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|57284230|gb|AAW36324.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus COL]
 gi|150373478|dbj|BAF66738.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus str. Newman]
          Length = 1168

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   NVE + I   S Y+     ++    ++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNVEEVDITTASDYIITEEVIS----HLKEELKTA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ EY
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIEY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|15923493|ref|NP_371027.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926180|ref|NP_373713.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus N315]
 gi|156978831|ref|YP_001441090.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253315228|ref|ZP_04838441.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255005296|ref|ZP_05143897.2| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|282895111|ref|ZP_06303331.1| transcription-repair coupling factor [Staphylococcus aureus A8117]
 gi|81832560|sp|Q7A7B2|MFD_STAAN RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|81855990|sp|Q99WA0|MFD_STAAM RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|13700393|dbj|BAB41691.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus N315]
 gi|14246271|dbj|BAB56665.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|156720966|dbj|BAF77383.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|282762529|gb|EFC02669.1| transcription-repair coupling factor [Staphylococcus aureus A8117]
          Length = 1168

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   N+E + I   S Y+     +    +++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVI----RHLKEELKTA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ EY
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIEY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|253730971|ref|ZP_04865136.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253725283|gb|EES94012.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 1168

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   NVE + I   S Y+     ++    ++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNVEEVDITTASDYIITEEVIS----HLKEELKTA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ EY
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIEY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|22536193|ref|NP_687044.1| transcription-repair coupling factor [Streptococcus agalactiae
           2603V/R]
 gi|25010083|ref|NP_734478.1| transcription-repair coupling factor [Streptococcus agalactiae
           NEM316]
 gi|77414464|ref|ZP_00790614.1| reticulocyte binding protein [Streptococcus agalactiae 515]
 gi|22533010|gb|AAM98916.1|AE014191_8 transcription-repair coupling factor [Streptococcus agalactiae
           2603V/R]
 gi|23094434|emb|CAD45653.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159474|gb|EAO70635.1| reticulocyte binding protein [Streptococcus agalactiae 515]
          Length = 1165

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 139/307 (45%), Gaps = 33/307 (10%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G +G+ K   +A   E + +  +V+   +  + +L S+  +    + V      Y 
Sbjct: 26  QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQTDSDKLSSDISSLIGEDNV------YQ 79

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVE 288
           ++  +  VP  +      SS+++ I R+  SA R L   E+N  ++ S       + + E
Sbjct: 80  FFADD--VPAAEFIF---SSLDKSISRL--SALRFLKDPEKNGVLITSISGLRLLLPNPE 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            +S+   + +IG      +L  +LV   Y++       G F   GD ++IF    ++  +
Sbjct: 133 VFSKSQYKFEIGQECYLDKLCKNLVNLGYQKVSQVFSPGEFSQRGDILDIF-EMTQEYPY 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FG++I+ I +F   T + ++ +E+++I      +        A K +         
Sbjct: 192 RLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDIILQDADFERAKKKL--------- 242

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
               EG L+ A  +++  TY  E+L TT +     +  R+L+     E    + +YIPE 
Sbjct: 243 ----EGYLVTASEVQR--TYLSEVLSTTENHFKHSDIRRFLSIFY--EKEWGILDYIPEG 294

Query: 469 SLLFVDE 475
           + LFVD+
Sbjct: 295 TPLFVDD 301


>gi|229829772|ref|ZP_04455841.1| hypothetical protein GCWU000342_01869 [Shuttleworthia satelles DSM
           14600]
 gi|229791761|gb|EEP27875.1| hypothetical protein GCWU000342_01869 [Shuttleworthia satelles DSM
           14600]
          Length = 1185

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 112/243 (46%), Gaps = 12/243 (4%)

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIV 295
           Y P  D    +    +  + R R  A  +L  + + ++V++ S +   +  + SY + I+
Sbjct: 82  YYPAKDLLFYQSDIRSNVLTRQRMQAVEALRGKEETVIVTTWSALMNKLPPLSSYDKNII 141

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV-AWRVSMFG 354
           ++  GD +  ++   +L+   Y+        G F V G  I++FP  L D    R+ ++G
Sbjct: 142 EVAQGDDMPVEKWRLALIGSGYEPVARVEHPGEFAVRGGIIDVFP--LTDANPIRIELWG 199

Query: 355 NDIEEISEFYPLTGQKIRN---VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           ++++ +  F P +   + +   ++TI+I  ++  V     L   ++ I+ +         
Sbjct: 200 DEVDTMRLFDPDSQLSLSDEDPLQTIRIVPSAEIVLSPEELRRGLEGIRADADRVCAGYR 259

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
           +  +  EA R++      +E +E     Q +E++  Y T +       +L +YIPED ++
Sbjct: 260 ESFKTEEAARIKAAADQIIEDVEGGFGSQQVESHLTYFTDQTL-----SLIDYIPEDGVI 314

Query: 472 FVD 474
           F+D
Sbjct: 315 FLD 317


>gi|289422646|ref|ZP_06424487.1| transcription-repair coupling factor [Peptostreptococcus anaerobius
           653-L]
 gi|289156946|gb|EFD05570.1| transcription-repair coupling factor [Peptostreptococcus anaerobius
           653-L]
          Length = 1133

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 134/313 (42%), Gaps = 54/313 (17%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           + G+T +GK      + + + R  + +A  +  A + Y E   +                
Sbjct: 30  ITGLTWAGKQNLAYSLFKDLSRQVLYVASTEYEAKKAYEELSVYLKDKV----------- 78

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-- 290
              +Y+   +       + + ++D  R      L+ ++  + V+SV  +        Y  
Sbjct: 79  ---SYLGSNEILFYNLDARDRKVDARRLKVFIKLINKDKSVFVTSVDAL-----TRKYMP 130

Query: 291 ----SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR----GTFRVCGDSIEIFPSH 342
               +    +LK+G +   +EL   LV   Y+R    +++    G F V G  ++IF + 
Sbjct: 131 KKLITDNTFKLKVGRTQGIQELTQKLVDLGYQR----VVKVEGFGQFSVRGGIVDIF-TL 185

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
           + D   R+  F ++I+ I EF   + + I   +++ I  +  ++ P+  +  A++ IK E
Sbjct: 186 MYDFPLRIEFFDDEIDSIREFDVYSQKSIDKKKSVTITPSRDFIYPKD-VTGAIEKIKSE 244

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
           ++    +L+    L   +R+E R  +D            +ENY  YL      +   +LF
Sbjct: 245 IRDD-TDLDVHKNL---ERIENREYFD-----------GLENYIDYLYD----DQDKSLF 285

Query: 463 EYIPEDSLLFVDE 475
           EY+ +D+L++VD+
Sbjct: 286 EYLAKDALIYVDD 298


>gi|323340106|ref|ZP_08080371.1| transcription-repair coupling factor [Lactobacillus ruminis ATCC
           25644]
 gi|323092483|gb|EFZ35090.1| transcription-repair coupling factor [Lactobacillus ruminis ATCC
           25644]
          Length = 1179

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/308 (19%), Positives = 131/308 (42%), Gaps = 26/308 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
            ++ GV+GS +T  +A + E  Q P IV+  +   A  L  +  N F    ++ F     
Sbjct: 26  HMITGVSGSVRTLLLADLEEKFQVPLIVVCDDLFHAQSLEEDLTNVFAEEDIDLF----- 80

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                   P  + +    S+ + +    R    + + + +  IVV+SVS I  +   + +
Sbjct: 81  --------PVEENFAAAISASSPEYKAQRVKTLQKMADGSSKIVVTSVSGIRRMLCPKDF 132

Query: 291 -SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
             +  ++ K+G+ +  ++L   L    Y+   +    G F V G   +I+  +LE+   R
Sbjct: 133 WLKSTIKFKLGEEIIPEKLKQELCTMGYRAVKMVERPGDFAVRGSIFDIYALNLENPV-R 191

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           + +F  +I+ +  F     + ++ ++ ++I   + ++     L      +++ +K  L +
Sbjct: 192 IDLFDTEIDSLRLFDSADQRSLKKIDEVEILPATDFIASDSMLEKGAAVLQKNVKDYLAK 251

Query: 410 L--EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
           L  E++ +LL          +   +LE      S E Y         G+   +LF+Y+ E
Sbjct: 252 LDDEEDKKLLADNLRTVADDWHRGILEPEHVVFSEELY---------GKSKTSLFDYLSE 302

Query: 468 DSLLFVDE 475
             ++  D+
Sbjct: 303 SGMIVFDD 310



 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+ Y+H ++   +  +I+ D   G++DVLV   ++  G+DIP    + + DAD+ G    
Sbjct: 858 RIAYVHGQMSETQMEKILADFIAGEYDVLVTTTIIETGVDIPNVNTLFVEDADRMGL--- 914

Query: 668 KTSLIQTIGRAARN 681
              L Q  GR  R+
Sbjct: 915 -AQLYQLRGRVGRS 927


>gi|302865387|ref|YP_003834024.1| transcription-repair coupling factor [Micromonospora aurantiaca
           ATCC 27029]
 gi|302568246|gb|ADL44448.1| transcription-repair coupling factor [Micromonospora aurantiaca
           ATCC 27029]
          Length = 1218

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 18/177 (10%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RP + +      A  L S   +  P   V  F S+ +    E   PR+DT   + + +  
Sbjct: 59  RPVLAVTATTREADDLASALGSLLPPEQVAVFPSW-ETLPHERLSPRSDTVGRRLAVLR- 116

Query: 254 QIDRMRHSATRSLLERNDC--IVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQK 306
              R+ H        R     +VV+ V  +      G+G +E      VQL  GD  + +
Sbjct: 117 ---RLAHPDAADAHGRTGPLRVVVAPVRSLLQPQLKGLGDLEP-----VQLAAGDEADLE 168

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           E+   L    Y R D+   RG F V G  +++FP   E  + RV  +G+++EEI  F
Sbjct: 169 EVARRLTDMAYARVDLVTKRGEFAVRGGILDVFPPTDEHPS-RVEFWGDEVEEIRTF 224


>gi|315501932|ref|YP_004080819.1| transcription-repair coupling factor [Micromonospora sp. L5]
 gi|315408551|gb|ADU06668.1| transcription-repair coupling factor [Micromonospora sp. L5]
          Length = 1218

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 18/177 (10%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RP + +      A  L S   +  P   V  F S+ +    E   PR+DT   + + +  
Sbjct: 59  RPVLAVTATTREADDLASALGSLLPPEQVAVFPSW-ETLPHERLSPRSDTVGRRLAVLR- 116

Query: 254 QIDRMRHSATRSLLERNDC--IVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQK 306
              R+ H        R     +VV+ V  +      G+G +E      VQL  GD  + +
Sbjct: 117 ---RLAHPDAADAHGRTGPLRVVVAPVRSLLQPQLKGLGDLEP-----VQLAAGDEADLE 168

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           E+   L    Y R D+   RG F V G  +++FP   E  + RV  +G+++EEI  F
Sbjct: 169 EVARRLTDMAYARVDLVTKRGEFAVRGGILDVFPPTDEHPS-RVEFWGDEVEEIRTF 224


>gi|73663562|ref|YP_302343.1| transcription-repair coupling factor [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|123761497|sp|Q49V12|MFD_STAS1 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|72496077|dbj|BAE19398.1| transcription-repair coupling factor [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 1170

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 135/319 (42%), Gaps = 28/319 (8%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           Q L  +  +E V L+ G++G+ K   +A+     ++  +V+  N   A +L S+   F  
Sbjct: 16  QELNEVFGKENV-LVTGLSGAAKATIIAEKYLNSEQQLLVVTNNLYQADKLESDLLQFVE 74

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI--DRMRHSATRSLLERNDCIVVS 276
            + +      Y Y       P  D   E+ S+ + Q   +R+R     +  ER    +V 
Sbjct: 75  DSEI------YKY-------PMQDIMTEEFSTQSPQFMSERVRTLTALAQEERG-LFIVP 120

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
                  +  V+ +    + L +GD ++  E L+ LV   Y+R+ +    G F + G  +
Sbjct: 121 LNGLKKWLTPVDMWKSHQLTLNVGDDIDIDEFLNKLVNMGYRRESVVSHIGEFSLRGGIV 180

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +I+P  L     R+  F  +++ I +F   + +   N+E + I   S Y+     L    
Sbjct: 181 DIYP--LIGKPVRIEFFDTEVDSIRDFDVESQRSEGNIEHVDITTASDYIITEDVLKHTK 238

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
             +K+  +    ++EK  R    +  E    ++ EM +     Q +     ++      E
Sbjct: 239 HKLKQAYEDTRPKIEKSVRNELKETYESFQLFEAEMFD----HQVLRRLVAFMY-----E 289

Query: 457 PPPTLFEYIPEDSLLFVDE 475
            P T+ +Y  ED+++ VDE
Sbjct: 290 QPATIMDYFKEDAIIAVDE 308


>gi|171473669|ref|YP_001798539.1| putative helicase [Acidianus filamentous virus 9]
 gi|170779999|gb|ACB37255.1| putative helicase [Acidianus filamentous virus 9]
          Length = 561

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V   R AE L++   E  I   ++ S+    ERI+ I  L+ GK  VL+  +L  EG
Sbjct: 430 LVIVRRIRHAELLSKMFDESGINADWVSSKTNLEERIQKIEALKNGKLQVLISTSLADEG 489

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDIP   LV +L   K     S+  LIQ IGR  R
Sbjct: 490 LDIPNLRLVVLLSQGK-----SRIKLIQRIGRVMR 519


>gi|21221313|ref|NP_627092.1| helicase [Streptomyces coelicolor A3(2)]
 gi|6689196|emb|CAB65593.1| putative helicase [Streptomyces coelicolor A3(2)]
          Length = 945

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 7/125 (5%)

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           AR  V+ V D+I+      +R L   +TK  A  + +Y      +   + S+  +  R +
Sbjct: 443 ARIIVKQVRDKISDPG--AMRALGFCVTKAHAHFMADYFRRAGFQAAALDSDSSSEVRAQ 500

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +RDL+ GK  V+  ++L  EGLDIP+   + +L         S T  +Q +GR  R  +
Sbjct: 501 ALRDLQDGKLQVIFSVDLFNEGLDIPDVDTLLLLRPTN-----SATVFLQQLGRGLRRTD 555

Query: 684 SKVIL 688
           +K +L
Sbjct: 556 TKPVL 560


>gi|315104557|gb|EFT76533.1| transcription-repair coupling factor [Propionibacterium acnes
           HL050PA2]
          Length = 1208

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259
           A +  +  K +   ++V Y+ S+ +    E   PRTDT       + +      ++ ++ 
Sbjct: 81  AEESVATLKTWLGADSVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 139

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +  RSLL+            + G+G +       V+L +G+  +  EL + LV   Y R
Sbjct: 140 VAPVRSLLQPQ----------VAGLGRIAP-----VRLAVGEQHDLTELTTELVNAAYSR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            D+   RG F V G  +++FP  LE    R+  FG++IEE++ F
Sbjct: 185 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227


>gi|152973901|ref|YP_001373418.1| transcription-repair coupling factor [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022653|gb|ABS20423.1| transcription-repair coupling factor [Bacillus cytotoxicus NVH
           391-98]
          Length = 1176

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/320 (18%), Positives = 148/320 (46%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +  ++ G+    K QL+ G+  S ++  MA + +  ++  +V+  N   A ++Y +  + 
Sbjct: 14  VQSIINGLEEGLKEQLVSGMATSSRSLLMAALYKKTKQSQLVVTHNLYQAQKIYEDLVSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    +    + ++   R      L    + I+V+
Sbjct: 74  LGEKDVWLY-------------PVNELIASEVGVASPELKAQRIEVLNRLAAGENGIIVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +     + E + Q  +++ +G  V+   LL +L    Y+R+ +    G F + G  
Sbjct: 121 PVAGLRRFLPMKELWKQKQIEINLGQEVDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E++ +R+  F  +++ I  F     +     E++K    + +V     L   
Sbjct: 181 LDIYPL-TEELPFRIEFFDTEVDSIRLFDVEEQRSQDKRESVKFGPATEFVFSPEELRVG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++++++ L M+ ++   + ++  A  + + +++++E+L+   + Q+IE   +YL+     
Sbjct: 240 IEHLEKGL-MKTMQKLSDDKIKTA--VLETVSHEIELLK---NGQNIEQMFKYLSIFY-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
           + P +L +Y+PE+ ++ +DE
Sbjct: 292 KEPASLIDYLPENGVVILDE 311



 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y H ++   E   ++     G++DVLV   ++  G+DIP    + + DAD+ G    
Sbjct: 860 RVTYAHGKMNESELESVMLSFLEGQYDVLVSTTIIETGVDIPNVNTLIVYDADRMGL--- 916

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 917 -SQLYQLRGRVGRS 929


>gi|76797974|ref|ZP_00780233.1| transcription-repair coupling factor [Streptococcus agalactiae
           18RS21]
 gi|76586654|gb|EAO63153.1| transcription-repair coupling factor [Streptococcus agalactiae
           18RS21]
          Length = 451

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 139/307 (45%), Gaps = 33/307 (10%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G +G+ K   +A   E + +  +V+   +  + +L S+  +    + V      Y 
Sbjct: 26  QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQTDSDKLSSDISSLIGEDNV------YQ 79

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVE 288
           ++  +  VP  +      SS+++ I R+  SA R L   E+N  ++ S       + + E
Sbjct: 80  FFADD--VPAAEFIF---SSLDKSISRL--SALRFLKDPEKNGVLITSISGLRLLLPNPE 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            +S+   + +IG      +L  +LV   Y++       G F   GD ++IF    ++  +
Sbjct: 133 VFSKSQYKFEIGQECYLDKLCKNLVNLGYQKVSQVFSPGEFSQRGDILDIF-EMTQEYPY 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FG++I+ I +F   T + ++ +E+++I      +        A K +         
Sbjct: 192 RLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDIILQDADFERAKKKL--------- 242

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
               EG L+ A  +++  TY  E+L TT +     +  R+L+     E    + +YIPE 
Sbjct: 243 ----EGYLVTASEVQR--TYLSEVLSTTENHFKHSDIRRFLSIFY--EKEWGILDYIPEG 294

Query: 469 SLLFVDE 475
           + LFVD+
Sbjct: 295 TPLFVDD 301


>gi|257783934|ref|YP_003179151.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469]
 gi|257472441|gb|ACV50560.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469]
          Length = 1147

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 123/305 (40%), Gaps = 41/305 (13%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           L ++ S +   +A +     RP +++   +  A +       +  ++AV  + +  DY  
Sbjct: 31  LSLSQSARPLMLAALWSQNPRPCLLVVAGEDAADRTARSLAAWLGNDAVLRYPNRKDY-- 88

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQ 292
                P +D      ++ ++ I   R  A   L      IVV+S   +   +  V S   
Sbjct: 89  -----PWSD------ATPDDAIIGARCRAIAKLSAGEKVIVVASAHALMRRVPPVGSGYF 137

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR--GTFRVCGDSIEIFPSHLEDVAWRV 350
           +     +GD V  +++ S LV   Y   D G +   GTF + GD+++IFP+       R+
Sbjct: 138 LPATFTVGDDVPFEDVASLLVGMGYA--DTGEVDAPGTFHIHGDTVDIFPAQATS-PVRI 194

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             FG++I+ I      TGQ I  ++ + +                + + KE ++      
Sbjct: 195 EFFGDEIDRIRRMVAATGQTIGAIDEVTVAPARE-----------LAFTKEAIR------ 237

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
             E  L    +    I  DLE+++      ++E Y   L G   G   P   E+I  ++L
Sbjct: 238 RAEEALYTRAQENSAIAADLELIQRGAQAPALERYLPVLYG---GTASP--LEHISSETL 292

Query: 471 LFVDE 475
           + + E
Sbjct: 293 VVLAE 297


>gi|223039442|ref|ZP_03609730.1| ATP-dependent DNA helicase RecG [Campylobacter rectus RM3267]
 gi|222879238|gb|EEF14331.1| ATP-dependent DNA helicase RecG [Campylobacter rectus RM3267]
          Length = 780

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFTM-AKVIEAMQRPAIVMAPNKI 204
           + P+ DQ  AIA L       E V+ +++G  GSGKT  M A  +    RPA++MAP  I
Sbjct: 225 FAPTDDQLNAIADLRSDFGGEEAVRRVVMGDVGSGKTLVMLAAALSVYPRPALIMAPTSI 284

Query: 205 LAAQLYSEFKNFFP 218
           LA Q+Y+E     P
Sbjct: 285 LAEQIYAEAVRLLP 298


>gi|282853612|ref|ZP_06262949.1| transcription-repair coupling factor [Propionibacterium acnes J139]
 gi|282583065|gb|EFB88445.1| transcription-repair coupling factor [Propionibacterium acnes J139]
          Length = 1209

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259
           A +  +  K +   ++V Y+ S+ +    E   PRTDT       + +      ++ ++ 
Sbjct: 82  AEESVATLKTWLGADSVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 140

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +  RSLL+            + G+G +       V+L +G+  +  EL + LV   Y R
Sbjct: 141 VAPVRSLLQPQ----------VAGLGRIAP-----VRLAVGEQHDLTELTTELVNAAYSR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            D+   RG F V G  +++FP  LE    R+  FG++IEE++ F
Sbjct: 186 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 228


>gi|302388384|ref|YP_003824206.1| transcription-repair coupling factor [Clostridium saccharolyticum
           WM1]
 gi|302199012|gb|ADL06583.1| transcription-repair coupling factor [Clostridium saccharolyticum
           WM1]
          Length = 1179

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/248 (18%), Positives = 116/248 (46%), Gaps = 9/248 (3%)

Query: 231 YYQPEAYV-PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVE 288
           +++P+ ++ P  D            + + R +  R L+E+    VV++   +   +  ++
Sbjct: 72  FFEPDVWLYPARDLLFFSADIHGNLLTKQRMTVFRQLMEKTSGWVVTTFDGLMDHLLPLK 131

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
              + ++ ++ G +++ +E    L++  Y+R       G F + G  I++FP   E++  
Sbjct: 132 YLKEQVLSVEGGQTIDVEEWKKRLIELGYERMGQVDGMGQFSIRGGIIDVFPL-TEELPV 190

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+ ++ ++++ I  F   + + I  +E+I+IY  +        +   ++ +++E K    
Sbjct: 191 RIELWDDEVDSIRTFDIESQRSIEQLESIRIYPATEMALTGAQIEEGIRVLEKEAKKYEK 250

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI-PE 467
           +L  + ++ E+ R+   ++  LE L+       ++ Y  Y       +   +  EY   E
Sbjct: 251 DLRAQSKIQESSRIRSIVSEFLEGLKDGFRQHGLDGYIHYFC-----QESVSFLEYFHGE 305

Query: 468 DSLLFVDE 475
           +S++F+DE
Sbjct: 306 NSVVFLDE 313



 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 7/99 (7%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V + H ++   E   I+ D   G+ DVLV   ++  GLDIP    + I DAD  G     
Sbjct: 868 VTFAHGQMHEHELERIMFDFVNGEIDVLVCTTIIETGLDIPNANTMIIQDADHMGL---- 923

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
           + L Q  GR  R+  +    YA  + K  +L  +E  +R
Sbjct: 924 SQLYQLRGRVGRSSRTS---YAFLMYKRDKLLKEEAEKR 959


>gi|314982388|gb|EFT26481.1| transcription-repair coupling factor [Propionibacterium acnes
           HL110PA3]
 gi|315092571|gb|EFT64547.1| transcription-repair coupling factor [Propionibacterium acnes
           HL110PA4]
          Length = 1208

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMR 259
           A +  +  K +   ++V Y+ S+ +    E   PRTDT       + +      ++ ++ 
Sbjct: 81  AEESVATLKTWLGADSVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVV 139

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +  RSLL+            + G+G +       V+L +G+  +  EL + LV   Y R
Sbjct: 140 VAPVRSLLQPQ----------VAGLGRIAP-----VRLAVGEQHDLTELTTELVNAAYSR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            D+   RG F V G  +++FP  LE    R+  FG++IEE++ F
Sbjct: 185 VDMVERRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227


>gi|166714776|gb|ABY88100.1| UvrB [Stenotrophomonas sp. ICB129]
 gi|166714780|gb|ABY88102.1| UvrB [Stenotrophomonas sp. ICB141]
          Length = 60

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 36/54 (66%)

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
           I++FP+  +  A R+ +F  ++E+I+ F PLTG+ IRN++   +Y  +HY T R
Sbjct: 2   IDVFPAESDSEALRIELFDGEVEKITMFDPLTGETIRNMQRFTVYPKTHYATTR 55


>gi|166714790|gb|ABY88107.1| UvrB [Stenotrophomonas sp. ICB133]
          Length = 60

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 38/60 (63%)

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
           T R  +  A++ IK ELK  L +L  E +L+EAQRL QR  +D+EM+   G C  IENYS
Sbjct: 1   TTRERVLAAVETIKVELKEPLEQLYAENKLVEAQRLAQRTQFDIEMMAEVGFCNGIENYS 60


>gi|148262223|ref|YP_001228929.1| transcription-repair coupling factor [Geobacter uraniireducens Rf4]
 gi|146395723|gb|ABQ24356.1| transcription-repair coupling factor [Geobacter uraniireducens Rf4]
          Length = 1159

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 106/232 (45%), Gaps = 16/232 (6%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I QL+  + + E    + G+ GS   + +++++  +++  +++  +   A +L  E + +
Sbjct: 9   INQLVSALSTAEASISIAGLKGSAPAYVLSRLLVGVKKNFLIITSDAESAEELCRELRFY 68

Query: 217 FP-HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIV 274
               +AV YF             P  DT   + +S +  I   R +    L++ R D +V
Sbjct: 69  SGREDAVLYF-------------PPWDTAPFESASPHADITGQRLNVLFRLMDGRADAVV 115

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
            S  + +  +   ++  ++   +  G+ V +++LL  LVK  Y    +   RG F + G 
Sbjct: 116 TSLPAVMQKLLPRKTLGEISQYIVAGEEVAREKLLEKLVKLGYSHVPLVEDRGGFSIRGG 175

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
            ++IFP  L     R+  FG+ ++ I  F P T + ++ +E + +  +   V
Sbjct: 176 ILDIFPPDL-PAPVRIEFFGDFVDTIRTFDPATQRSLQPLEELVLLPSREVV 226


>gi|256824567|ref|YP_003148527.1| transcription-repair coupling factor Mfd [Kytococcus sedentarius
           DSM 20547]
 gi|256687960|gb|ACV05762.1| transcription-repair coupling factor Mfd [Kytococcus sedentarius
           DSM 20547]
          Length = 1244

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 88/190 (46%), Gaps = 27/190 (14%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A  L +  ++  P  +V  F S+ +    E   PR+DT       + +++  +R  A   
Sbjct: 112 AEDLAASLRSLLPPQSVAVFPSW-ETLPHERLSPRSDT-------VGQRLAVLRRLAHPG 163

Query: 266 LLERNDC--IVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
             + +    +VVS+V  +      G+G +     + V ++ G++ + +E + +LV   Y 
Sbjct: 164 QADHDGPLRVVVSAVRSLLQPLPAGLGDL-----VPVSVQAGETRDPEEFIEALVAAAYA 218

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG F V G  +++FP   ED   RV  +G+++EE+  F      ++ +  +++
Sbjct: 219 RTDLVEKRGEFAVRGGIVDVFPP-TEDHPLRVEFWGDEVEEVRWF------RVADQRSLE 271

Query: 379 IYANSHYVTP 388
           I     +  P
Sbjct: 272 IAPGGLWAPP 281


>gi|269202123|ref|YP_003281392.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ED98]
 gi|296276156|ref|ZP_06858663.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MR1]
 gi|262074413|gb|ACY10386.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ED98]
          Length = 1168

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   N+E + I   S Y+     +    +++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVI----RHLKEELKTA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ EY
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----EIPSTIIEY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|238855038|ref|ZP_04645366.1| transcription-repair coupling factor [Lactobacillus jensenii 269-3]
 gi|282934824|ref|ZP_06340058.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1]
 gi|238832282|gb|EEQ24591.1| transcription-repair coupling factor [Lactobacillus jensenii 269-3]
 gi|281301096|gb|EFA93406.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1]
          Length = 1161

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 117/281 (41%), Gaps = 32/281 (11%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           I++  N+  A +L        P   V+YF            V  T       +S +E   
Sbjct: 51  IIIEENENKAQRLVDNLAPILPEEKVQYFA-----------VDSTLATQRATASPDELAQ 99

Query: 257 RMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           R++  A   LL  +  IVV++   + Y +   +SY +    +K+G   + KEL   LV  
Sbjct: 100 RIK--ALHLLLSGDSGIVVTTAQGLEYQLNPKDSYIRGNKLIKVGQEYDLKELNKWLVAS 157

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA-WRVSMFGNDIEEISEFYPLTGQKIRNV 374
            Y+++ +    G F V GD ++I+P  L+ V+  R+  FG++++ I  F   T + I   
Sbjct: 158 GYRKEALVAKPGEFAVRGDILDIYP--LDQVSPIRIEFFGDEVDTIKSFDVNTQKSILEK 215

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           E I +      +     L  A   IK+E+K             E+   E      LE+L+
Sbjct: 216 EEIVVLPACDRIFETDNLKKAYNLIKDEIK-------------ESPNSESAEQNFLEVLD 262

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                   +NY+  +    P     +L  Y+PE+ L+  ++
Sbjct: 263 ELAQGNLPDNYAFLVDYLLP--KSCSLLSYLPENGLVVFND 301


>gi|314922168|gb|EFS85999.1| transcription-repair coupling factor [Propionibacterium acnes
           HL001PA1]
 gi|314965251|gb|EFT09350.1| transcription-repair coupling factor [Propionibacterium acnes
           HL082PA2]
 gi|315094011|gb|EFT65987.1| transcription-repair coupling factor [Propionibacterium acnes
           HL060PA1]
 gi|327329541|gb|EGE71301.1| transcription-repair coupling factor [Propionibacterium acnes
           HL103PA1]
          Length = 1208

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 23/159 (14%)

Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMRHSATR 264
           +  K +   ++V Y+ S+ +    E   PRTDT       + +      ++ ++  +  R
Sbjct: 86  ATLKTWLGADSVCYYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVVVAPVR 144

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           SLL+            + G+G +       V+L +G+  +  EL + LV   Y R D+  
Sbjct: 145 SLLQPQ----------VAGLGRIAP-----VRLAVGEQHDLTELATELVNAAYSRVDMVE 189

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            RG F V G  +++FP  LE    R+  FG++IEE++ F
Sbjct: 190 RRGEFAVRGGIVDVFPPVLEHPV-RIDFFGDEIEEMTSF 227


>gi|260664822|ref|ZP_05865673.1| transcription-repair coupling factor [Lactobacillus jensenii
           SJ-7A-US]
 gi|260561305|gb|EEX27278.1| transcription-repair coupling factor [Lactobacillus jensenii
           SJ-7A-US]
          Length = 1161

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 117/281 (41%), Gaps = 32/281 (11%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           I++  N+  A +L        P   V+YF            V  T       +S +E   
Sbjct: 51  IIIEENENKAQRLVDNLAPILPEEKVQYFA-----------VDSTLATQRATASPDELAQ 99

Query: 257 RMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           R++  A   LL  +  IVV++   + Y +   +SY +    +K+G   + KEL   LV  
Sbjct: 100 RIK--ALHLLLSGDSGIVVTTAQGLEYQLNPKDSYIRGNKLIKVGQEYDLKELNKWLVAS 157

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA-WRVSMFGNDIEEISEFYPLTGQKIRNV 374
            Y+++ +    G F V GD ++I+P  L+ V+  R+  FG++++ I  F   T + I   
Sbjct: 158 GYRKEALVAKPGEFAVRGDILDIYP--LDQVSPIRIEFFGDEVDTIKSFDVNTQKSILEK 215

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           E I +      +     L  A   IK+E+K             E+   E      LE+L+
Sbjct: 216 EEIVVLPACDRIFETDNLKKAYNLIKDEIK-------------ESPNSESAEQNFLEVLD 262

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                   +NY+  +    P     +L  Y+PE+ L+  ++
Sbjct: 263 ELAQGNLPDNYAFLVDYLLP--KSCSLLSYLPENGLVVFND 301


>gi|21282187|ref|NP_645275.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49485367|ref|YP_042588.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|297207394|ref|ZP_06923833.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300910353|ref|ZP_07127806.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|81827911|sp|Q6GBY5|MFD_STAAS RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|81847858|sp|Q8NXZ6|MFD_STAAW RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|21203623|dbj|BAB94323.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49243810|emb|CAG42235.1| putative transcription-repair coupling factor [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|296887957|gb|EFH26851.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300888342|gb|EFK83529.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 1168

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 93/191 (48%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F   I+ I +F   T +   NVE + I   S Y+     ++    ++KEELK  
Sbjct: 190 --RIELFDTKIDSIRDFDVETQRSKDNVEEVDITTASDYIITEEVIS----HLKEELKTA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ EY
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIEY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|300709530|ref|YP_003735344.1| Hef nuclease [Halalkalicoccus jeotgali B3]
 gi|299123213|gb|ADJ13552.1| Hef nuclease [Halalkalicoccus jeotgali B3]
          Length = 799

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 19/162 (11%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM-------HSEVKTLERIEIIRDLRLGKFD 634
           G R+++    +  AE LTE+L E     R++        S +   E+ E++ D R G+F+
Sbjct: 371 GRRVIVFTEYRDTAETLTEFLGEHVDTRRFVGQGDKEGSSGMTQKEQKEVLDDFRKGEFE 430

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           VLV  ++  EGLD+PE  LV   +      + +    IQ  GR  R    + V+L A+  
Sbjct: 431 VLVSTSVAEEGLDVPEVDLVLFYEP-----VPTAIRAIQRKGRTGRQDEGQVVVLLAEDT 485

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
                  I   +RRREK++E   +     + V  ++ E +DP
Sbjct: 486 RDEAYFWI---SRRREKEMESELR---KLKGVASEVEEQLDP 521


>gi|319746177|gb|EFV98447.1| transcription-repair coupling factor [Streptococcus agalactiae ATCC
           13813]
          Length = 1165

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 138/307 (44%), Gaps = 33/307 (10%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G +G+ K   +A   E + +  +V+   +  + +L S+  +    + V      Y 
Sbjct: 26  QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQNDSDKLSSDISSLIGEDNV------YQ 79

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVE 288
           ++  +  VP  +      SS+++ I R+  SA R L   E+N  ++ S       + + E
Sbjct: 80  FFADD--VPAAEFIF---SSLDKSISRL--SALRFLKDPEKNGVLITSISGLRLLLPNPE 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            +S+   + +IG      +L  +LV   Y++       G F   GD ++IF    ++  +
Sbjct: 133 VFSKSQYKFEIGQECYLDKLSKNLVNLGYQKVSQVFSPGEFSQRGDILDIF-EMTQEYPY 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FG++I+ I +F   T + ++ +E+++I      +        A K +         
Sbjct: 192 RLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDIILQDADFERAKKKL--------- 242

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
               EG L+ A   EQR  Y  E+L TT +     N  R+L+     E    + +YIPE 
Sbjct: 243 ----EGYLVTASE-EQR-AYLSEVLSTTENHFKHSNIRRFLSIFY--EKEWGILDYIPEG 294

Query: 469 SLLFVDE 475
           + LFVD+
Sbjct: 295 TPLFVDD 301


>gi|303232983|ref|ZP_07319663.1| transcription-repair coupling factor [Atopobium vaginae PB189-T1-4]
 gi|302480910|gb|EFL43990.1| transcription-repair coupling factor [Atopobium vaginae PB189-T1-4]
          Length = 1138

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 9/129 (6%)

Query: 259 RHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           R  A   L     CIVV+S  S +  +    S       L + D  +  ++  +L+   Y
Sbjct: 103 RTKALHMLAAGTPCIVVASARSLLRRLPPTTSAHTSPFVLALADERQPSDVARTLLAMGY 162

Query: 318 KRQDIGIIR-----GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           +R  I   R     G F + GD ++IF S  E    R+  FGN+I+ I  F P TGQ I 
Sbjct: 163 ER--IATPRDLTQPGMFCLQGDRLDIF-SATEQTCVRIEFFGNEIDSIRSFLPATGQTIA 219

Query: 373 NVETIKIYA 381
            +ET++++A
Sbjct: 220 PLETLEVFA 228


>gi|313835372|gb|EFS73086.1| transcription-repair coupling factor [Propionibacterium acnes
           HL037PA2]
 gi|314972378|gb|EFT16475.1| transcription-repair coupling factor [Propionibacterium acnes
           HL037PA3]
 gi|328908370|gb|EGG28129.1| transcription-repair coupling factor [Propionibacterium sp. P08]
          Length = 1194

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 40/206 (19%)

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKIL-----------------AAQLYSEFKNFFPHNAVE 223
           +T T+   + A  RPA+V   ++ L                 A +  +  + +   +AV 
Sbjct: 28  RTPTLDLQVTASARPAVVAVLSRSLDGSRRLPVLLVTSTFREAEESVATLETWLGGDAVC 87

Query: 224 YFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
           Y+ S+ +    E   PRTDT       + +      ++ ++  +  RSLL+         
Sbjct: 88  YYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVVVAPVRSLLQPQ------- 139

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
              + G+G ++      V L +G+  +  EL + L+   Y R D+   RG F V G  ++
Sbjct: 140 ---VAGLGRIKP-----VHLAVGEEHDLTELATELINAAYSRVDMVERRGEFAVRGGIVD 191

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEF 363
           +FP  LE    R+  FG+ IEE++ F
Sbjct: 192 VFPPVLEHPV-RIDFFGDKIEEMTSF 216


>gi|85711280|ref|ZP_01042339.1| Transcription-repair coupling factor, superfamily II helicase
           [Idiomarina baltica OS145]
 gi|85694781|gb|EAQ32720.1| Transcription-repair coupling factor, superfamily II helicase
           [Idiomarina baltica OS145]
          Length = 1159

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 121/322 (37%), Gaps = 60/322 (18%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS-YYDYYQP 234
           + GS     +AKVI+      +V+  +   A +L  E         V YF   + DY+  
Sbjct: 24  LNGSSPALALAKVIDRTPGRVLVVTADANQAHRLEQE---------VRYFAGEHTDYHDD 74

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQM 293
               P  +T      S ++ I   R S    L + R   ++VS  + +  I  VE     
Sbjct: 75  ITVFPDWETLPYDTFSPHQDIISERLSVLARLPQARRGALIVSLNTLLQRIAPVEFVQSQ 134

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            + L +   ++   L   L +  Y+  +  +  G F   G  +++FP       +R+  F
Sbjct: 135 SLNLTVNQQLDALALREQLERNGYRAVEQVMEHGEFSSRGSILDLFPMG-STTPYRIDFF 193

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
            N+I+ I  F P T + +  VE++K+     +    P     +++ +   + R       
Sbjct: 194 DNEIDSIRPFDPETQRSLTPVESVKLLPAHEF----PLTKAGIEHFRSAFRERF------ 243

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG----------EPPPTLFE 463
                       I+++ E L           Y +   G+ PG          E   TLF+
Sbjct: 244 -----------EISHERESL-----------YQQVSKGQTPGGIEYYLPLFFEQTATLFD 281

Query: 464 YIPEDSLLFVDESHVTIPQISG 485
           Y+P D+LL      VT   I G
Sbjct: 282 YLPNDALL------VTFGDIQG 297


>gi|118474124|ref|YP_891808.1| ATP-dependent DNA helicase RecG [Campylobacter fetus subsp. fetus
           82-40]
 gi|261886450|ref|ZP_06010489.1| ATP-dependent DNA helicase RecG [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gi|118413350|gb|ABK81770.1| ATP-dependent DNA helicase RecG [Campylobacter fetus subsp. fetus
           82-40]
          Length = 602

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFTM-AKVIEAMQRPAIVMAPNKI 204
           + P+ DQ AAI  +   I      + +++G  GSGKT  M A  +    +PA++MAP  I
Sbjct: 224 FKPTNDQLAAIKDIKNDISQNIAAKRVIMGDVGSGKTLVMLAAALMIYPKPAVLMAPTSI 283

Query: 205 LAAQLYSEFKNFFP 218
           LA QLYSE K   P
Sbjct: 284 LADQLYSEAKRLLP 297


>gi|317495443|ref|ZP_07953812.1| transcription-repair coupling factor [Gemella moribillum M424]
 gi|316914502|gb|EFV35979.1| transcription-repair coupling factor [Gemella moribillum M424]
          Length = 1185

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 114/258 (44%), Gaps = 25/258 (9%)

Query: 243 TYIEKESSINEQIDRM-RHSATRSLLERNDCIV----VSSVSCIYGIGSVESYSQM---- 293
           T +EKE+ I  +ID + RH+A  + L +N   V    VS V  I  I    SY  +    
Sbjct: 64  TTLEKETYIYPEIDILKRHTAKSNDLVQNSIKVLENLVSKVPSIIIIPIEASYRTLKDPE 123

Query: 294 -----IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                  ++ +   +  ++L   LV   Y R D   + G F   G  ++IF S L +   
Sbjct: 124 KFLNTTFEINLDTVINFEDLQKKLVNMGYNRVDSVDVVGEFSKRGSIVDIF-SPLNEKPI 182

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++++ I  F  +T + +  VE + +Y  + +       +  +  I E LK   +
Sbjct: 183 RLDFFDDELDSIRTFDEITQKSLEKVENVTVYPTNDFFLTNEEKDIVVTKILERLKDEKL 242

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           + E+  + + +  L+++I    E+   TG    +E++S  +      E   ++ +Y  ED
Sbjct: 243 KQEENYKDI-SDYLQEKI----EIYRATGDFSELESFSNLIY-----EHTFSIADYFTED 292

Query: 469 SLLFVDESHVTIPQISGM 486
            ++F D  H    ++  +
Sbjct: 293 VVIFFDNYHKITEKVESL 310


>gi|241896607|ref|ZP_04783903.1| transcription-repair coupling factor [Weissella paramesenteroides
           ATCC 33313]
 gi|241870088|gb|EER73839.1| transcription-repair coupling factor [Weissella paramesenteroides
           ATCC 33313]
          Length = 1166

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/362 (20%), Positives = 149/362 (41%), Gaps = 34/362 (9%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A+ +L  G+ ++    L+ G++G+ +T  +A + +  Q+P ++++ ++  A QL  +
Sbjct: 9   QDKALQELATGL-TKGGRHLMTGISGTARTVYLAALQQRTQQPMVIVSDSQFHADQLAED 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            +    +  V  F +  +    E  V   DT +             R SA   LL     
Sbjct: 68  LQALLGNEHVAVFPAE-ESLAAEMAVTSLDTRLA------------RVSALHLLLTDPQA 114

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           +VV+ ++     +  V+ + Q  + +      E K+L   L +  Y R       G F +
Sbjct: 115 VVVTGIAGAQRYLPPVKKFQQAQLTIDFDHEYELKDLEIKLHQMGYHRNTTVEQPGEFAI 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++++P    D   R+  F  +++ +  F     + I+N++++ I   +  V     
Sbjct: 175 RGSIVDVYPLD-ADYPVRLDFFDTELDSMRSFDAENQRSIKNIDSLTILPAADLVLSDDD 233

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
              A    K +L++ + +   +    E + L + IT    +L T    Q +     YL  
Sbjct: 234 RQKA----KTQLELAMTKQRDQLAGAEKRHLTEAIT---PLLTTLADGQILPEMRAYLHM 286

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA---------TLAEYGF 502
             P     +LF+Y+P + ++  D+    I   + M   D +  A         T A++G+
Sbjct: 287 LYPD--AASLFDYLPVNGIVVFDDYPRAIENAAQMRLDDTNWWAEKLDKQQVLTTADFGW 344

Query: 503 RL 504
            L
Sbjct: 345 SL 346



 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V Y+H ++   +   I+ D   G++DVLV   ++  G+DIP    + + +AD  G    
Sbjct: 856 QVAYIHGQMTETQMEGILVDFINGEYDVLVTTTIIETGVDIPNANTLFVENADYMGL--- 912

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSI 697
              L Q  GR  R+ N     +    T+S+
Sbjct: 913 -AQLYQLRGRVGRSNNVAYAYFTYPGTRSL 941


>gi|282915821|ref|ZP_06323589.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus D139]
 gi|282320312|gb|EFB50654.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus D139]
          Length = 1168

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   N+E + I   S Y+     +    +++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVI----RHLKEELKTA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ +Y
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|291278661|ref|YP_003495496.1| transcription-repair coupling factor [Deferribacter desulfuricans
           SSM1]
 gi|290753363|dbj|BAI79740.1| transcription-repair coupling factor [Deferribacter desulfuricans
           SSM1]
          Length = 1111

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 117/283 (41%), Gaps = 28/283 (9%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           GS K+F +  +++  Q  ++++  N+    ++  E   F P   +  F  Y        +
Sbjct: 11  GSSKSFLLRMLLKESQNSSLIICENRNEMEKVVQELNFFLPDTEILSFPEY-------TH 63

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVESYSQMIV 295
            P  +  IE        I   R ++ + L+  ND   +V +  S +  I S   +   I 
Sbjct: 64  EPFDEVKIES------NILSERVTSLKKLITDNDQKVVVGTFYSILKKIFSKSDFKNSIY 117

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            LK+GDS+   EL   L    Y   +    +G F   GD  EIF    E    R   F +
Sbjct: 118 SLKVGDSISFDELRYILGYLGYVEVEYVGDKGEFIQRGDFFEIFLIDKE-YPVRCEFFDD 176

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE-LKMRLIELEKEG 414
           ++E I  F P+T +K+++V+ I I   +  +     L   +K IK+E ++ R+ E  K  
Sbjct: 177 ELEAIYYFDPVTIKKVKDVDAIDILPANEILCDEEDL---IKNIKDETVRERIKEFGKFA 233

Query: 415 RLLEAQRLEQRITYDLEMLETT--------GSCQSIENYSRYL 449
            +       Q++T   E L           G    IENY  YL
Sbjct: 234 GVHWYAPYVQKLTPFWEYLGEVESVYFLGDGFQNKIENYFDYL 276


>gi|77407708|ref|ZP_00784463.1| reticulocyte binding protein [Streptococcus agalactiae COH1]
 gi|77173707|gb|EAO76821.1| reticulocyte binding protein [Streptococcus agalactiae COH1]
          Length = 1165

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 138/307 (44%), Gaps = 33/307 (10%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G +G+ K   +A   E + +  +V+   +  + +L S+  +    + V      Y 
Sbjct: 26  QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQNDSDKLSSDISSLIGEDNV------YQ 79

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVE 288
           ++  +  VP  +      SS+++ I R+  SA R L   E+N  ++ S       + + E
Sbjct: 80  FFADD--VPAAEFIF---SSLDKSISRL--SALRFLKDPEKNGVLITSISGLRLLLPNPE 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            +S+   + +IG      +L  +LV   Y++       G F   GD ++IF    ++  +
Sbjct: 133 VFSKSQYKFEIGQECYLDKLSKNLVNLGYQKVSQVFSPGEFSQRGDILDIF-EMTQEYPY 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FG++I+ I +F   T + ++ +E+++I      +        A K +         
Sbjct: 192 RLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDIILQDADFERAKKKL--------- 242

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
               EG L+ A   EQR  Y  E+L TT +     N  R+L+     E    + +YIPE 
Sbjct: 243 ----EGYLVTASE-EQR-AYLSEVLSTTENHFKHSNIRRFLSIFY--EKEWGILDYIPEG 294

Query: 469 SLLFVDE 475
           + LFVD+
Sbjct: 295 TPLFVDD 301


>gi|257791044|ref|YP_003181650.1| transcription-repair coupling factor [Eggerthella lenta DSM 2243]
 gi|257474941|gb|ACV55261.1| transcription-repair coupling factor [Eggerthella lenta DSM 2243]
          Length = 1161

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 27/220 (12%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           LGV  S + F +A       +P +V+   +  A         +     V  F    DY  
Sbjct: 31  LGVASSARPFLVAARFAHRPQPTLVVVAGEDAAVAFSRSLAAYLGDERVMRFPERSDY-- 88

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQ 292
              +VP+         S   Q+ R R  A  +L    + +VV+S  + +  +    S   
Sbjct: 89  --PFVPK--------PSDPAQVAR-RMEAVHALASGREVVVVASARALVRALPPAGSDVH 137

Query: 293 MIVQLKIGDSV------------EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           + V L  G  +            E ++   +L ++ Y+        GTF V G +I++FP
Sbjct: 138 VPVALSAGRELAAMPGAQAASVTEFEDFAHALEERGYRNTGELDGPGTFAVRGGTIDVFP 197

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            +L     R+  FG+++EEI    P TGQ I+ +  + IY
Sbjct: 198 GNLV-YPVRLDFFGDELEEIRRIVPTTGQTIQALPDVSIY 236


>gi|148242564|ref|YP_001227721.1| transcription-repair coupling factor [Synechococcus sp. RCC307]
 gi|147850874|emb|CAK28368.1| Transcription-repair coupling factor [Synechococcus sp. RCC307]
          Length = 1183

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 29/180 (16%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L+ G S++ +EL ++L +  Y+R       G++   GD +++FP   E +  R+  FG D
Sbjct: 146 LRKGASIDLEELAANLARLGYERVSTIEQEGSWSRRGDIVDLFPVSAE-LPVRLEFFGED 204

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY-IKEELKMRLIELEKEGR 415
           +E++ EF P T + +  V+ ++I    +     P +  A++  + ++L           +
Sbjct: 205 LEKLREFDPATQRSLDAVDLVRITPTGY----GPLVADALRANLPDQLD----------Q 250

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LL A+ +EQ +  D                 R L G    + P +L +Y+PE +LL +DE
Sbjct: 251 LLNAEAMEQLLAGD------------TPEGMRRLMGLA-WQQPSSLLDYLPEHTLLVLDE 297


>gi|325830839|ref|ZP_08164223.1| transcription-repair coupling factor [Eggerthella sp. HGA1]
 gi|325487246|gb|EGC89689.1| transcription-repair coupling factor [Eggerthella sp. HGA1]
          Length = 1161

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 27/220 (12%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           LGV  S + F +A       +P +V+   +  A         +     V  F    DY  
Sbjct: 31  LGVASSARPFLVAARFAHRPQPTLVVVAGEDAAVAFSRSLAAYLGDERVMRFPERSDY-- 88

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQ 292
              +VP+         S   Q+ R R  A  +L    + +VV+S  + +  +    S   
Sbjct: 89  --PFVPK--------PSDPAQVAR-RMEAVHALASGREVVVVASARALVRALPPAGSDVH 137

Query: 293 MIVQLKIGDSV------------EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           + V L  G  +            E ++   +L ++ Y+        GTF V G +I++FP
Sbjct: 138 VPVALSAGRELAAMPGAQAASVTEFEDFAHALEERGYRNTGELDGPGTFAVRGGTIDVFP 197

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            +L     R+  FG+++EEI    P TGQ I+ +  + IY
Sbjct: 198 GNLV-YPVRLDFFGDELEEIRRIVPTTGQTIQALPDVSIY 236


>gi|166714788|gb|ABY88106.1| UvrB [Stenotrophomonas sp. ICB128]
          Length = 61

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 36/54 (66%)

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
           I++FP+  +  A R+ +F  ++E+I+ F PLTG+ +RN++   +Y  +HY T R
Sbjct: 2   IDVFPAESDSEALRIELFDGEVEKITMFDPLTGETLRNMQRFTVYPKTHYATTR 55


>gi|167772369|ref|ZP_02444422.1| hypothetical protein ANACOL_03746 [Anaerotruncus colihominis DSM
           17241]
 gi|167665472|gb|EDS09602.1| hypothetical protein ANACOL_03746 [Anaerotruncus colihominis DSM
           17241]
          Length = 1157

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 88/181 (48%), Gaps = 22/181 (12%)

Query: 300 GDSVEQKELLSSLVKQQYKRQD--IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           G   + KEL++ LV   Y R D   G+ + + R  G  ++  P H+ D  +R+  +G++I
Sbjct: 145 GGQYDIKELIAFLVAAGYTRCDQVDGVCQFSQR--GGILDFSPPHMPD-PFRIEFWGDEI 201

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG-RL 416
           + IS F   T +++  V+ + I   +  V   P      + +K      L+E   +G R 
Sbjct: 202 DTISTFKTDTQRRVDTVKRVDITPAAEVVADSPA-----RLVK------LLESAAKGLRG 250

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
            + +R ++++  ++E +E     QS++ +   L        P TLF+Y+P+ +L   D +
Sbjct: 251 TQGKRAKEKLAQEIEQIENGVLPQSLDRWMPLLY-----PEPATLFDYMPKAALFLCDTA 305

Query: 477 H 477
           +
Sbjct: 306 N 306


>gi|270308451|ref|YP_003330509.1| transcription-repair coupling factor (superfamily II helicase)
           [Dehalococcoides sp. VS]
 gi|270154343|gb|ACZ62181.1| transcription-repair coupling factor (superfamily II helicase)
           [Dehalococcoides sp. VS]
          Length = 1154

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 97/215 (45%), Gaps = 20/215 (9%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           + V  +G+ F++A V   ++ P +V+      A +L  +             ++ Y   +
Sbjct: 36  ISVLDAGRGFSLASVYRRLKCPMLVITSQPERARELLEQ-------------IAAYTGEE 82

Query: 234 PEAYVPRTDT--YIEKESSINEQIDRMRHSATRSLLER--NDCIVVSSVSCIYG-IGSVE 288
           P  ++P      Y    S  N  +++MR +       R  +  I+V++V  +     S E
Sbjct: 83  P-GFLPDPSLLPYQRAVSDRNSSLEKMRLAGILGGYIRSGDSRIIVTAVPALLQRYVSPE 141

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            + Q  +Q+  G  +E ++L+S   +  Y+++ I  I GT+   G  ++IFP H ED   
Sbjct: 142 IFKQSFIQVWAGLEIEPQDLISRFQQLGYRQESIVEIPGTYSHRGGILDIFP-HTEDNPV 200

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
           R+  FGN +E +  F P + +  + V  + I   S
Sbjct: 201 RLEFFGNTLESLRNFDPKSQRSGKAVNELTISPAS 235


>gi|312866818|ref|ZP_07727031.1| putative transcription-repair coupling factor [Streptococcus
           parasanguinis F0405]
 gi|311097601|gb|EFQ55832.1| putative transcription-repair coupling factor [Streptococcus
           parasanguinis F0405]
          Length = 764

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 150/317 (47%), Gaps = 35/317 (11%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           +L+LG++ + K   MA   +++++ A+++  +   A +L S+F      + V  F+    
Sbjct: 26  ELILGLSATTKAIVMASAFDSIEK-AVLITSSYNEAERLASDFIALLGEDKVHTFLG--- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DCIVVSSVSCI-YGIGSVE 288
                      D  + +    +++    R  A   L +++   I+V++VS I   + S +
Sbjct: 82  ----------DDNPLAEFVFASQERKFARLEALNFLCQKDRQGILVTNVSGIKLLLPSPK 131

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDVA 347
            ++  I QLK+G  ++   L  +L K  Y++    + +G F + GD ++IF    L+   
Sbjct: 132 VFASSIFQLKVGQEIDLTTLSETLQKIGYQKVSQVLQQGEFSLRGDILDIFEIDQLQ--P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
           +R+  FG++I+ I  F P + + + NVE +++ A S  +            ++EE  +R 
Sbjct: 190 YRIEFFGDEIDGIRIFDPESQRSVENVEEVQLKAVSDLL------------LQEEDFIRG 237

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
            +  ++ +   A   E+  +Y  E+L      +   +  ++++     E   TLF+Y+P+
Sbjct: 238 QQQIEQLQEQSAN--EEFKSYLAEILGDISQRKLYPDLRKFISFFY--EKQYTLFDYLPK 293

Query: 468 DSLLFVDESHVTIPQIS 484
            + +F+D+      QI+
Sbjct: 294 HTPVFLDDYQKIADQIA 310



 Score = 37.7 bits (86), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++ K + S R   +LL+G  G GKT   M    +A+   +  
Sbjct: 604 FEQDFPYIETDDQLRSIEEIKKDMESNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQV 663

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVE 223
            V+ P  +LA Q Y+ FK  F   AVE
Sbjct: 664 AVLVPTTVLAQQHYANFKERFESFAVE 690


>gi|326778864|ref|ZP_08238129.1| transcription-repair coupling factor [Streptomyces cf. griseus
           XylebKG-1]
 gi|326659197|gb|EGE44043.1| transcription-repair coupling factor [Streptomyces cf. griseus
           XylebKG-1]
          Length = 1177

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 103/239 (43%), Gaps = 24/239 (10%)

Query: 156 AIAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A+A+ +K      +  + L+G  G+ + F +A +     R  + +      A  L +  +
Sbjct: 15  ALAEAVKAAGDGHRAHVDLVGPPGA-RPFAVAALARQTGRTVLAVTATGREAEDLAAALR 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
              P + +  + S+ +    E   PR+DT   + + +     R+ H            +V
Sbjct: 74  TLLPPDTIAEYPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPRADDPETGPVSVV 128

Query: 275 VSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           V+ +  +      G+G +E      V L  G S +  E++ +L    Y R ++   RG F
Sbjct: 129 VAPIRSVLQPQVKGLGELEP-----VALAGGQSADLGEVVDALAAAAYSRVELVEKRGEF 183

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
            V G  +++FP   E+   RV  +G+++EEI  F      KI +  ++++ A+  +  P
Sbjct: 184 AVRGGILDVFPP-TEEHPLRVEFWGDEVEEIRYF------KIADQRSLEVAAHGLWAPP 235


>gi|327438085|dbj|BAK14450.1| transcription-repair coupling factor [Solibacillus silvestris
           StLB046]
          Length = 1170

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 125/308 (40%), Gaps = 27/308 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
            L+ G+TGS +   +  + +   +   +M+ N + A +L  +         V Y      
Sbjct: 29  HLITGLTGSARPALIHTIYQETNKSIYIMSSNLLQAQKLVDDLTALVGDGHVHY------ 82

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
            Y  E ++    T      + + ++   R +    L+ +   I +  V+ +   + + + 
Sbjct: 83  -YPAEEFIAANMT------TSSHELRAQRIATLGRLVNQERGIYIIPVAGMRSMLNAPQK 135

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +   +G  V+    L  LV+  Y R ++    G F + G  ++I+P + +D   R
Sbjct: 136 WLGYELSTSLGQDVDINTWLDKLVEMGYTRSEMVTTPGEFAMRGGILDIYPPYAQD-PIR 194

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIY-ANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           + +F  +++ I  F     + I  ++ IKI+ A    +T    +  A     E L+  L 
Sbjct: 195 IELFDTEVDSIRTFSADNQRSIEKLKEIKIFPATELLLTKEERIKLA-----ERLEASLA 249

Query: 409 ELEKEGRLLEAQR-LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
              K+ R  E Q  L Q I +D+E+L        I  Y   L      + P  L +Y  E
Sbjct: 250 VSLKKVRKQETQELLMQNIQHDIELLRLGHLPDHIAKYGSLLF-----DQPYFLGDYFKE 304

Query: 468 DSLLFVDE 475
           D L+  DE
Sbjct: 305 DGLVLFDE 312



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV + H ++   +   +I     G++DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 855 DARVAFAHGKMTEAKLESVILSFIEGEYDVLVTTTIIETGVDIPNVNTLIVHDADRMGL- 913

Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690
              + L Q  GR  R   S  I YA
Sbjct: 914 ---SQLYQLRGRVGR---SNRIAYA 932


>gi|66802840|ref|XP_635263.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
 gi|60463423|gb|EAL61608.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
          Length = 2403

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 15/122 (12%)

Query: 580 QQGLRILLTVLTKRMAEDLT---------EYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           Q+ LRIL+ V T+  A +LT         EYL+ + +        + + ++  IIR  R 
Sbjct: 640 QKDLRILVFVETRSGASNLTSMLKKEPFQEYLHTKRLVGHNGDDGMDSEKQQSIIRKFRD 699

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVILY 689
           GK  ++V  N+L EG+D+ +C +V   D      + S  SLIQ  GRA ++N +  +I+Y
Sbjct: 700 GKCRLIVTTNVLEEGIDVQDCNIVICYDG-----ILSLKSLIQRRGRARSKNESKFIIIY 754

Query: 690 AD 691
            D
Sbjct: 755 ND 756


>gi|260893903|ref|YP_003240000.1| transcription-repair coupling factor [Ammonifex degensii KC4]
 gi|260866044|gb|ACX53150.1| transcription-repair coupling factor [Ammonifex degensii KC4]
          Length = 1123

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 18/212 (8%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPA-IVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           K Q + G++G+  +F +A      + PA +V+ P++  A  L +E K  +     E FV 
Sbjct: 25  KPQAVYGLSGTALSFLLAATFR--EWPAGMVIVPDEETALTLAAELKLLW---GEEVFV- 78

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
                    ++PR + +    S  +  + R R  +  +L  R   +V ++ + + G+   
Sbjct: 79  ---------FLPR-EIFGLGPSLPSAFVPRQRLLSLAALARRQGVVVATAPALLQGLAPP 128

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           E++S    +L  G+ +  +EL   LV+  Y R     + G F   G  ++ FP     + 
Sbjct: 129 ENFSPHCWELWKGEELSPEELGQRLVETGYVRVSAVEVPGQFARRGGIVDFFPPS-SPLP 187

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            RV   G++I  I+ F P + +    +E +K+
Sbjct: 188 VRVEFDGDEIARIATFDPASQRSQTRLEAVKV 219


>gi|291445280|ref|ZP_06584670.1| transcriptional-repair coupling factor [Streptomyces roseosporus
           NRRL 15998]
 gi|291348227|gb|EFE75131.1| transcriptional-repair coupling factor [Streptomyces roseosporus
           NRRL 15998]
          Length = 1184

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 103/239 (43%), Gaps = 24/239 (10%)

Query: 156 AIAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A+A+ +K      +  + L+G  G+ + F +A +     R  + +      A  L +  +
Sbjct: 22  ALAEAVKAAGDGHRAHVDLVGPPGA-RPFAVAALARQTGRTVLAVTATGREAEDLAAALR 80

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
              P + V  + S+ +    E   PR+DT   + + +     R+ H            +V
Sbjct: 81  TLLPPDTVAEYPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPREDDPETGPVSVV 135

Query: 275 VSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           V+ +  +      G+G +E      V L  G S +  E++ +L    Y R ++   RG F
Sbjct: 136 VAPIRSVLQPQVKGLGDLEP-----VSLAGGQSADLGEVVDALAAAAYSRVELVEKRGEF 190

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
            V G  +++FP   E+   RV  +G+++EEI  F      KI +  ++++ A+  +  P
Sbjct: 191 AVRGGILDVFPP-TEEHPLRVEFWGDEVEEIRYF------KIADQRSLEVAAHGLWAPP 242


>gi|14475571|emb|CAC41975.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
          Length = 1964

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 15/122 (12%)

Query: 580 QQGLRILLTVLTKRMAEDLT---------EYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           Q+ LRIL+ V T+  A +LT         EYL+ + +        + + ++  IIR  R 
Sbjct: 197 QKDLRILVFVETRSGASNLTSMLKKEPFQEYLHTKRLVGHNGDDGMDSEKQQSIIRKFRD 256

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVILY 689
           GK  ++V  N+L EG+D+ +C +V   D      + S  SLIQ  GRA ++N +  +I+Y
Sbjct: 257 GKCRLIVTTNVLEEGIDVQDCNIVICYDG-----ILSLKSLIQRRGRARSKNESKFIIIY 311

Query: 690 AD 691
            D
Sbjct: 312 ND 313


>gi|182438215|ref|YP_001825934.1| putative transcriptional-repair coupling factor [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466731|dbj|BAG21251.1| putative transcriptional-repair coupling factor [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 1177

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 103/239 (43%), Gaps = 24/239 (10%)

Query: 156 AIAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A+A+ +K      +  + L+G  G+ + F +A +     R  + +      A  L +  +
Sbjct: 15  ALAEAVKAAGDGHRAHVDLVGPPGA-RPFAVAALARQTGRTVLAVTATGREAEDLAAALR 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
              P + +  + S+ +    E   PR+DT   + + +     R+ H            +V
Sbjct: 74  TLLPPDTIAEYPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPRADDPETGPVSVV 128

Query: 275 VSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           V+ +  +      G+G +E      V L  G S +  E++ +L    Y R ++   RG F
Sbjct: 129 VAPIRSVLQPQVKGLGELEP-----VALAGGQSADLGEVVDALAAAAYSRVELVEKRGEF 183

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
            V G  +++FP   E+   RV  +G+++EEI  F      KI +  ++++ A+  +  P
Sbjct: 184 AVRGGILDVFPP-TEEHPLRVEFWGDEVEEIRYF------KIADQRSLEVAAHGLWAPP 235


>gi|153864551|ref|ZP_01997419.1| hypothetical protein BGS_1255 [Beggiatoa sp. SS]
 gi|152145954|gb|EDN72581.1| hypothetical protein BGS_1255 [Beggiatoa sp. SS]
          Length = 57

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 34/49 (69%)

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           +YVTPR  L+ A+  IK+E   RL EL    +L+EAQRL+QR  YDLEM
Sbjct: 6   YYVTPRDVLSQAIDNIKKERLARLKELNAANKLVEAQRLDQRTAYDLEM 54


>gi|302336465|ref|YP_003801672.1| transcription-repair coupling factor [Olsenella uli DSM 7084]
 gi|301320305|gb|ADK68792.1| transcription-repair coupling factor [Olsenella uli DSM 7084]
          Length = 1171

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 5/125 (4%)

Query: 259 RHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           R +A   L    DC+VV+S  S +  +  V S         +GD V  +E  S LV   Y
Sbjct: 103 RCNAIARLSAGEDCLVVASARSLLRRVPPVGSGYFASSAFAVGDEVAFEEAASLLVGMGY 162

Query: 318 -KRQDIGIIR--GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
               D G +   GTF V GD+++++P+       RV  FG++++ +    P TGQ I  +
Sbjct: 163 VDAGDAGGVSVPGTFHVHGDAVDVYPAQ-ASAPVRVEFFGDEVDRVRRMLPSTGQTIGEL 221

Query: 375 ETIKI 379
             + +
Sbjct: 222 AEVVV 226


>gi|239941833|ref|ZP_04693770.1| putative transcriptional-repair coupling factor [Streptomyces
           roseosporus NRRL 15998]
 gi|239988293|ref|ZP_04708957.1| putative transcriptional-repair coupling factor [Streptomyces
           roseosporus NRRL 11379]
          Length = 1177

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 103/239 (43%), Gaps = 24/239 (10%)

Query: 156 AIAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A+A+ +K      +  + L+G  G+ + F +A +     R  + +      A  L +  +
Sbjct: 15  ALAEAVKAAGDGHRAHVDLVGPPGA-RPFAVAALARQTGRTVLAVTATGREAEDLAAALR 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
              P + V  + S+ +    E   PR+DT   + + +     R+ H            +V
Sbjct: 74  TLLPPDTVAEYPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPREDDPETGPVSVV 128

Query: 275 VSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           V+ +  +      G+G +E      V L  G S +  E++ +L    Y R ++   RG F
Sbjct: 129 VAPIRSVLQPQVKGLGDLEP-----VSLAGGQSADLGEVVDALAAAAYSRVELVEKRGEF 183

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
            V G  +++FP   E+   RV  +G+++EEI  F      KI +  ++++ A+  +  P
Sbjct: 184 AVRGGILDVFPP-TEEHPLRVEFWGDEVEEIRYF------KIADQRSLEVAAHGLWAPP 235


>gi|291303253|ref|YP_003514531.1| transcription-repair coupling factor [Stackebrandtia nassauensis
           DSM 44728]
 gi|290572473|gb|ADD45438.1| transcription-repair coupling factor [Stackebrandtia nassauensis
           DSM 44728]
          Length = 1351

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 22/198 (11%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           Q+ +    + + FT+A + +A +R  + +        +L        P  +V ++ ++ +
Sbjct: 35  QVHVTAPAAARPFTVAALAQA-ERTVLAVTATSREGEELTQSLAGLLPDGSVAFYPAW-E 92

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIG 285
               E   PR+DT  ++ + ++    R+ H     L      +VV+ V  +      G+G
Sbjct: 93  TLPHERLSPRSDTVGKRLALLH----RLAHPQGAPLR-----VVVAPVRSLLQPQLKGLG 143

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            ++      V+L +G+S +  +L + L    Y R D+   RG F V G  ++IFP   E 
Sbjct: 144 DLKP-----VRLAVGESTDLSDLAAELSDLAYARVDLVEKRGEFAVRGGILDIFPPTDEH 198

Query: 346 VAWRVSMFGNDIEEISEF 363
            + RV  FG++IE I  F
Sbjct: 199 PS-RVEFFGDEIESIRSF 215


>gi|119485555|ref|ZP_01619830.1| hypothetical protein L8106_24270 [Lyngbya sp. PCC 8106]
 gi|119456880|gb|EAW38007.1| hypothetical protein L8106_24270 [Lyngbya sp. PCC 8106]
          Length = 508

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 19/157 (12%)

Query: 574 EINLAAQQGLRILLTVLTKRMAE--------DLTEYLYERNIRVRYMHSEVKTLERIEII 625
           EI L  +  LR+L  +L++   E        + T Y   R+  +  +  +    ER +I+
Sbjct: 315 EIALCTEGKLRVLTNLLSQHYPERILIFTGDNATVYRISRDFLIPAITHQTPVKERHQIL 374

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NV 682
              R G++  LV  ++L EG+D+P+  +  IL         S+   IQ +GR  R     
Sbjct: 375 SKFRQGEYKTLVASHVLNEGVDVPDARIAIILSGTA-----SEREYIQRLGRVLRKGSQA 429

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
           N + +LY + +T++   A + T++RR+ Q +++   N
Sbjct: 430 NKQAVLY-EVVTENT--AEERTSQRRKGQNKYSADQN 463


>gi|210608664|ref|ZP_03287941.1| hypothetical protein CLONEX_00120 [Clostridium nexile DSM 1787]
 gi|210152921|gb|EEA83927.1| hypothetical protein CLONEX_00120 [Clostridium nexile DSM 1787]
          Length = 1112

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 118/261 (45%), Gaps = 29/261 (11%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G   S KT  M  + +  +R  I+   +++ A Q+Y E++ F   +   Y          
Sbjct: 32  GCVTSQKTHLMYALGDGFKRK-IIAVSSELKAKQIYEEYR-FLDSDVWIY---------- 79

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQM 293
               P  D    +     + + + R    ++LLE+    V++S       +  +E   + 
Sbjct: 80  ----PAKDLLFYQADLRGKFLIKQRMEVYQALLEQEQVTVITSFDGFMDSLLPLEEMEKR 135

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
           ++ L+ G  ++ ++L   +V   Y+R++     G F V G  ++I+P   E+V  R+ M+
Sbjct: 136 VISLEAGQELDFEKLKKDMVLLGYEREEQIEGPGQFAVRGGILDIYPL-TEEVPVRIEMW 194

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM-------R 406
           G++I+ I  F   + + I N+E+I+IY  + +   +    + + Y  ++  M       R
Sbjct: 195 GDEIDSIRTFDVESQRSIENLESIRIYPATDFPEEQAKRVSFLDYFDKKTSMLFLDEPVR 254

Query: 407 LIE----LEKEGRLLEAQRLE 423
           LIE    +E+E    +A R+E
Sbjct: 255 LIEKGESVEEEFVQAQANRME 275



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V + H ++K  E   I+ D   G+ DVLV   ++  GLDI     + I DAD+ G     
Sbjct: 802 VAFAHGQMKERELENIMLDFINGEIDVLVSTTIIETGLDISNANTMIIHDADQLGL---- 857

Query: 669 TSLIQTIGRAARN 681
           + + Q  GR  R+
Sbjct: 858 SQMYQLRGRVGRS 870


>gi|227888706|ref|ZP_04006511.1| ATP-dependent RNA helicase [Lactobacillus johnsonii ATCC 33200]
 gi|227850733|gb|EEJ60819.1| ATP-dependent RNA helicase [Lactobacillus johnsonii ATCC 33200]
          Length = 461

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++LT+YL E+ ++V  +H  +   ER  IIR +R G++  +V  +L   G+D+P 
Sbjct: 256 TKKTVDELTDYLVEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPG 315

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +  K+        +I  IGR  RN
Sbjct: 316 VSLVVNYEIPKD-----LEFVIHRIGRTGRN 341


>gi|312144318|ref|YP_003995764.1| transcription-repair coupling factor [Halanaerobium sp.
           'sapolanicus']
 gi|311904969|gb|ADQ15410.1| transcription-repair coupling factor [Halanaerobium sp.
           'sapolanicus']
          Length = 1164

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 143/339 (42%), Gaps = 22/339 (6%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G+ GS  +F  A ++E  +   +   P+     Q+  +            F        P
Sbjct: 29  GLKGSSLSFFAANILEKAKSNVVFFLPDNYYLQQMQEDLLRLLKRKNFLVF--------P 80

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVESYSQ 292
           E  +   +  +   ++I+E   R +        ++ D   I+ +  +    +   ++Y  
Sbjct: 81  EEEILPHEQLMSDLTTISE---RTKVLTDLVFAKKTDKKIILTTPAAVFKKLTPKDTYKS 137

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             + LK+G+ ++ K++  +L    YKR+++    G + + G  I+IF + L++  +R+ +
Sbjct: 138 KSLYLKVGNEIDLKKIKRALFSLGYKREEMVEAPGQYSIRGGIIDIF-TLLDEQPFRIEL 196

Query: 353 FGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           FG++I+ I +   L+ Q+ +  V+ I I   ++ +     +  A   +K+  +  +  L 
Sbjct: 197 FGDEIDSIRKI-DLSAQRSKEQVQKIIIPPFANIIVDEAVVQRAYPRLKQSYEQAIKSLN 255

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
           ++G   EA+ L+ +     ++LE          + ++L    P     + F+Y+ E ++ 
Sbjct: 256 QKGLSEEAEYLQAKSK---DLLEKFREQHRFPGFEQFLHYYYP--EADSFFDYLSESTIF 310

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
            V    +     S  Y+        L E G  LP  +DN
Sbjct: 311 RVRPDKIEKVS-SNNYQEILDNYNNLLEQGIILPDYIDN 348



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           ++A  L + + E  I V +   + K LE+I  + +    KFD+LV   ++  GLDIP   
Sbjct: 844 KIAGKLQKIVPEAKIAVAHGQMKEKRLEKI--MYNFYHHKFDILVCTTIIETGLDIPNVN 901

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAAR 680
            + I  ADK G     + L Q  GR  R
Sbjct: 902 TIIINHADKMGL----SQLYQLRGRVGR 925


>gi|325288390|ref|YP_004264571.1| transcription-repair coupling factor [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324963791|gb|ADY54570.1| transcription-repair coupling factor [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 1182

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 146/344 (42%), Gaps = 30/344 (8%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           Q+   I  R+  Q++  ++GS KT   A +I+   +  I+   ++  A +  ++ + + P
Sbjct: 16  QIQAAIEKRDSPQMIFHISGSMKTALAANLIKKKGQSLILTFSDE-QALKWINDLQTWLP 74

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
              + +       Y    ++P       +E++     +R+R    R+L E  + I+V+ V
Sbjct: 75  QRRILF-------YPTTEWLPFEVLGRSRETTA----ERIR--VLRALSEGGNEIIVAPV 121

Query: 279 SCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             I   +   E + +  +Q+ +G +    EL+ +LV   Y RQ+I   RG F + G  ++
Sbjct: 122 QAIVRKLFCPEHWKKYSLQVAVGKTYPLDELIKTLVTVGYDRQEIVEARGQFALRGGILD 181

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTPRPTLNTAM 396
           I P   E V  R+  F  +++ I  F  L  QK  +  T   I+    YV          
Sbjct: 182 IAPLDCEPV--RIEFFDEEVDSIRTF-DLETQKSSDARTEAWIFPVQEYVIKIEEQQELK 238

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
             IK + +  +  L + G+    +RL  ++ Y  E L+     Q I + + Y        
Sbjct: 239 WEIKNKARKAVGRLLRLGKTEAVKRLHHKVEYLGERLD-----QGIMDENSYPFLSLLPI 293

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
              +L  ++ E +L+F+DE      Q+      DF     + EY
Sbjct: 294 KFVSLLGWLNEQALIFLDEPLRLKEQL------DFQHSQRMEEY 331


>gi|323126266|gb|ADX23563.1| Transcription-repair coupling factor [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 1166

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 101/217 (46%), Gaps = 13/217 (5%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           G+ S ++ QL++G++GS K   MA      Q   +VM   +    +L S+  +      V
Sbjct: 19  GLASLDR-QLVMGLSGSSKALAMASAFLDSQEKIVVMTSTQNEVEKLASDLSSLLGEELV 77

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
             F  + D      ++  +   ++K  S  E +  +R+  ++ +L     + +S +  + 
Sbjct: 78  YQF--FADDVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSGLRTLL 128

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
               V + SQ  +QL +G+  +   L   L+   Y++    I  G F   GD ++I+   
Sbjct: 129 PNPDVFTKSQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI- 185

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +++ +R+  FG+DI+ I +F+P T +    +E I I
Sbjct: 186 TQELPYRLEFFGDDIDSIRQFHPETQKSFEQLEGIFI 222


>gi|323353284|ref|ZP_08087817.1| DNA helicase RecG [Streptococcus sanguinis VMC66]
 gi|322121230|gb|EFX92993.1| DNA helicase RecG [Streptococcus sanguinis VMC66]
          Length = 671

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 60/104 (57%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+LT Y + + ++V  +H ++K+ E+  I++D + G+ D+LV   ++  G+++P   +
Sbjct: 484 LEEELTAY-FGQQVQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R    S  +L A+  T+S
Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582


>gi|166714730|gb|ABY88088.1| UvrB [Stenotrophomonas rhizophila]
          Length = 61

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 36/54 (66%)

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
           I++FP+  +  A R+ +F  ++E+I+ F PLTG+ +RN++   +Y  +HY T R
Sbjct: 2   IDVFPAESDSEALRIELFDGEVEKITLFDPLTGETMRNMQRFTVYPKTHYATTR 55


>gi|255322616|ref|ZP_05363761.1| ATP-dependent DNA helicase RecG [Campylobacter showae RM3277]
 gi|255300524|gb|EET79796.1| ATP-dependent DNA helicase RecG [Campylobacter showae RM3277]
          Length = 638

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFTM-AKVIEAMQR 194
           DI+ +     + P+ DQ  AIA L       E V+ +++G  GSGKT  M A  +    R
Sbjct: 215 DISSWLKNLPFAPTDDQLNAIADLRADFSGEEAVRRVVMGDVGSGKTLVMLAAALSVYPR 274

Query: 195 PAIVMAPNKILAAQLYSEFKNFFP 218
            A++MAP  ILA Q+Y+E     P
Sbjct: 275 AALIMAPTSILAEQIYAEAARLLP 298


>gi|49482730|ref|YP_039954.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|295427037|ref|ZP_06819674.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|81828081|sp|Q6GJG8|MFD_STAAR RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|49240859|emb|CAG39526.1| putative transcription-repair coupling factor [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|295129040|gb|EFG58669.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 1168

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   N+E + I   S Y+     ++    ++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIS----HLKEELKTA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ +Y
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|257424615|ref|ZP_05601043.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257427281|ref|ZP_05603682.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257429918|ref|ZP_05606304.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257435524|ref|ZP_05611574.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M876]
 gi|282903089|ref|ZP_06310981.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus C160]
 gi|282904878|ref|ZP_06312738.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282907825|ref|ZP_06315663.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910141|ref|ZP_06317947.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282913331|ref|ZP_06321122.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918284|ref|ZP_06326024.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus C427]
 gi|282923035|ref|ZP_06330721.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus C101]
 gi|283957293|ref|ZP_06374751.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293500380|ref|ZP_06666232.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509318|ref|ZP_06668034.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M809]
 gi|293515907|ref|ZP_06670597.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M1015]
 gi|297591586|ref|ZP_06950223.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MN8]
 gi|257272642|gb|EEV04762.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275932|gb|EEV07400.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257279434|gb|EEV10029.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257285161|gb|EEV15278.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M876]
 gi|282314554|gb|EFB44941.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317850|gb|EFB48219.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus C427]
 gi|282322802|gb|EFB53122.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325989|gb|EFB56295.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282328301|gb|EFB58576.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331995|gb|EFB61504.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282596515|gb|EFC01475.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus C160]
 gi|283791217|gb|EFC30027.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290921315|gb|EFD98373.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096340|gb|EFE26600.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467863|gb|EFF10373.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M809]
 gi|297575455|gb|EFH94172.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312436407|gb|ADQ75478.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus TCH60]
          Length = 1168

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   N+E + I   S Y+     ++    ++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIS----HLKEELKTA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ +Y
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|329731067|gb|EGG67439.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 1168

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   N+E + I   S Y+     ++    ++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIS----HLKEELKTA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ +Y
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|323438735|gb|EGA96475.1| transcription-repair coupling factor [Staphylococcus aureus O11]
 gi|323442053|gb|EGA99688.1| transcription-repair coupling factor [Staphylococcus aureus O46]
          Length = 1168

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   N+E + I   S Y+     ++    ++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIS----HLKEELKTA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ +Y
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|302332216|gb|ADL22409.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 1168

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   N+E + I   S Y+     ++    ++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIS----HLKEELKTA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ +Y
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|257432620|ref|ZP_05608982.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257282485|gb|EEV12618.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
           aureus E1410]
          Length = 1168

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   N+E + I   S Y+     ++    ++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIS----HLKEELKTA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ +Y
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|283469795|emb|CAQ49006.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 1168

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   N+E + I   S Y+     ++    ++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIS----HLKEELKTA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ +Y
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|282850657|ref|ZP_06260036.1| transcription-repair coupling factor [Veillonella parvula ATCC
           17745]
 gi|282580150|gb|EFB85554.1| transcription-repair coupling factor [Veillonella parvula ATCC
           17745]
          Length = 1098

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 112/249 (44%), Gaps = 42/249 (16%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           R+   ++ G++GS K+F +++   A +++P +++  +K        +   F+P+  V+ F
Sbjct: 24  RKGKSVIYGLSGSQKSFLLSQSFSAGLKKPVVIVVHDKDHKEMWERDLAFFWPNVPVQSF 83

Query: 226 VSYYDYYQPEAYVPRTD--TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
                        P TD   +     S+  Q  +MR  A   LL   +  VV        
Sbjct: 84  -------------PITDHVDFTTVARSLENQGAQMRALA---LLAWQEPAVV-------- 119

Query: 284 IGSVESYSQMIV----------QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           I + E  +Q +V             + D++E+   L  LV   Y+R D    RG F V G
Sbjct: 120 IANAEEVTQYVVSPHYLKGQSLHFALNDAIERDVALEQLVTIGYERVDQVEQRGHFAVRG 179

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D ++I+P +  D   R+  FG++I+ +  F+ +  Q  R++E I+ Y  + +   +   +
Sbjct: 180 DILDIYPVN-SDHPIRIEFFGDEIDTL-RFFSVENQ--RSIEQIESYTVTPFFLGQSDAD 235

Query: 394 -TAMKYIKE 401
            T + Y+K+
Sbjct: 236 STLLSYVKD 244



 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 31/59 (52%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            +R    H ++   +  EI+ D   G +DVL+  +++  GLDIP    + I DAD+ G 
Sbjct: 783 GLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGL 841


>gi|251781475|ref|YP_002995776.1| putative transcription-repair coupling factor [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390103|dbj|BAH80562.1| putative transcription-repair coupling factor [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 1166

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 101/217 (46%), Gaps = 13/217 (5%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           G+ S ++ QL++G++GS K   MA      Q   +VM   +    +L S+  +      V
Sbjct: 19  GLASLDR-QLVMGLSGSSKALAMASAFLDSQEKIVVMTSTQNEVEKLASDLSSLLGEELV 77

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
             F  + D      ++  +   ++K  S  E +  +R+  ++ +L     + +S +  + 
Sbjct: 78  YQF--FADDVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSGLRTLL 128

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
               V + SQ  +QL +G+  +   L   L+   Y++    I  G F   GD ++I+   
Sbjct: 129 PNPDVFTKSQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI- 185

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +++ +R+  FG+DI+ I +F+P T +    +E I I
Sbjct: 186 TQELPYRLEFFGDDIDSIRQFHPETQKSFEQLEGIFI 222


>gi|212537171|ref|XP_002148741.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224]
 gi|210068483|gb|EEA22574.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224]
          Length = 1431

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 52/79 (65%), Gaps = 7/79 (8%)

Query: 614 SEVKTL-ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           +E+ TL ++ +++ +LR+GK ++L+  N+L EG+D+P C +V   D  K+  LR   S I
Sbjct: 443 TELSTLSDQRDVLAELRVGKTNILIATNVLEEGIDVPACNMVICFDPPKD--LR---SFI 497

Query: 673 QTIGRAARNVNSKVILYAD 691
           Q  GR AR+  S+++L+ D
Sbjct: 498 QRRGR-ARDRLSRLVLFMD 515


>gi|325962661|ref|YP_004240567.1| transcription-repair coupling factor Mfd [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323468748|gb|ADX72433.1| transcription-repair coupling factor Mfd [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 1221

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A  L +  + + P + V  F S+ +    E   PR+DT + +  S+  ++     SA   
Sbjct: 91  AEDLAAALRAYLPADCVAEFPSW-ETLPHERLSPRSDT-VGRRLSVLRRLAHPESSAAGP 148

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           L      +       + G+G +     + V LK+G      +++ SL    Y R D+   
Sbjct: 149 LRVVVAPVRAVVQPVVAGLGEL-----VPVTLKVGQEKPFGDVVRSLADAAYARVDMVTH 203

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           RG F V G  I++FP   ED   RV  FG++++++  F
Sbjct: 204 RGEFAVRGGIIDVFPP-TEDHPIRVEFFGDEVDQMRWF 240


>gi|304405853|ref|ZP_07387511.1| transcription-repair coupling factor [Paenibacillus curdlanolyticus
           YK9]
 gi|304345096|gb|EFM10932.1| transcription-repair coupling factor [Paenibacillus curdlanolyticus
           YK9]
          Length = 1177

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/359 (21%), Positives = 137/359 (38%), Gaps = 43/359 (11%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF--- 216
           +L G+ +  + QL+ G+ GS +   ++ +   + RP +V+  N   A ++  + +     
Sbjct: 17  VLTGVTAGMREQLISGLAGSSRQVLVSALRSDLDRPMLVVTHNMFAAQKIAEDLQELLSP 76

Query: 217 -----FPHN---AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
                +P N   A E  VS      PE    R D  I         +             
Sbjct: 77  SEVLLYPANELVAAEAAVS-----SPETLAQRIDALIRLSQGFRGIV------------- 118

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
               +  S V     +  V + +Q  + LK+G+S+  +  L  +    Y+R D    +G 
Sbjct: 119 ---VVPFSGVRRYVPVKGVMADAQ--ISLKVGESLPMETFLRRMTGIGYERVDRVESKGE 173

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
             V G  ++ +P     VA RV  F  +I+ I  F     + +  ++   +         
Sbjct: 174 MSVRGGIVDFYPL-TSPVACRVEWFDEEIDSIRTFDASDQRSLEKLDAFVVTPCRELPAD 232

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
                 A ++ ++ L     +LEK       +RL+  I  ++E L      Q      +Y
Sbjct: 233 ERRFKNAAQHAQDLLDK---QLEKMADRTAKERLKGEIGSEIEKLREE---QYFSEMYKY 286

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
           ++   P     TL +Y+P+D+LL +DE    I     + R +      L  +G  LPS 
Sbjct: 287 VSLLYPERH--TLLDYLPQDTLLILDEPLRLIETARQLERDEAEWATHLLSHGKSLPSL 343



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H ++   E  + I D   G+ DVLV  +++  G+DIP    + + DADK G  
Sbjct: 846 DARVAVGHGQMSEQELEKTILDFLDGESDVLVSTSIIETGVDIPNVNTLIVHDADKMGL- 904

Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690
              + L Q  GR  R   S  I YA
Sbjct: 905 ---SQLYQLRGRVGR---SNRIAYA 923


>gi|260887854|ref|ZP_05899117.1| transcription-repair coupling factor [Selenomonas sputigena ATCC
           35185]
 gi|330838722|ref|YP_004413302.1| transcription-repair coupling factor [Selenomonas sputigena ATCC
           35185]
 gi|260862360|gb|EEX76860.1| transcription-repair coupling factor [Selenomonas sputigena ATCC
           35185]
 gi|329746486|gb|AEB99842.1| transcription-repair coupling factor [Selenomonas sputigena ATCC
           35185]
          Length = 1118

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 97/223 (43%), Gaps = 15/223 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  +  ++++    R    L+ G++GS K    A      ++P +++  ++       ++
Sbjct: 10  QDGSARKIVEAFSRRAGKTLVYGLSGSQKHALFAAACNTAEKPVVIVTHSREAIEAWRAD 69

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                P   +               +P  D    + ++   +   +R      LL++N  
Sbjct: 70  LTALLPTREL-------------MELPEVDMMAVEATAKGMERTALRMGVLGRLLKKNPV 116

Query: 273 IVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV++  +     G S   + +M ++L++G ++ ++ LLS LV+  Y+        G F  
Sbjct: 117 IVLAHAAAAVQKGVSRRDFERMSLRLEVGATLSRETLLSRLVELGYEAAGEVDGLGQFSA 176

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            G  ++I+P +   +  R+  F ++I+ + EF P T + +RNV
Sbjct: 177 RGGIVDIYPLN-ASLPLRLEFFDDEIDSLREFDPATRRSVRNV 218


>gi|74694613|sp|Q75B50|DED1_ASHGO RecName: Full=ATP-dependent RNA helicase DED1
          Length = 623

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           LAA  G   L+ V TKRMA+ LT++L  +N+    +H +    ER   +   R G+ +VL
Sbjct: 397 LAASDGGLTLVFVETKRMADALTDFLIMQNLSATAIHGDRTQAERERALAFFRTGRANVL 456

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 457 VATAVAARGLDIPNVTHVINYDLPSD-----IDDYVHRIGRTGRAGNTGL 501


>gi|229917410|ref|YP_002886056.1| transcription-repair coupling factor [Exiguobacterium sp. AT1b]
 gi|229468839|gb|ACQ70611.1| transcription-repair coupling factor [Exiguobacterium sp. AT1b]
          Length = 1175

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 133/309 (43%), Gaps = 30/309 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF-PHNAVEYFVSYY 229
           QL+ G+T S K   +A ++++  R  +V+  N   A +++ + ++   P   + Y +   
Sbjct: 27  QLVTGLTTSAKALVLAGLVKSSSRRLVVVTHNMYQAQKMFDQLESLIGPDKTLLYPI--- 83

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRM--RHSATRSLLERNDCIVVSSVSCIYG-IGS 286
                       D  +  E S+    + +  R  A   LL++   +VV  +  +   + S
Sbjct: 84  ------------DETLAGELSLTSSPELLAARIDARTRLLDQTGGVVVVPLGGLRRYVPS 131

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            E++    V LK G  ++  +    L    Y+R       G F V G  ++++P   E  
Sbjct: 132 PEAWQDSRVMLKPGSDLDLADFAKQLTGMGYERTATVTTPGEFSVRGSILDVYP-LTEAR 190

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+ +F  +I+ I  F   T + +  V  + I   + ++     L  A   ++++   R
Sbjct: 191 PYRIDLFDTEIDSIFTFDAETQRSLGVVGEVCITPATEFIATENQLKQAGGALRKQYD-R 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
            +EL   G  +  Q LE+ +  D+E LE     + +  YS  L          TL +Y+ 
Sbjct: 250 TVEL--IGNEVIRQALEEGVVTDIERLERGDLPEKVGKYSPLLY-------TSTLLDYVG 300

Query: 467 EDSLLFVDE 475
           +D++L +DE
Sbjct: 301 KDAVLILDE 309


>gi|326692375|ref|ZP_08229380.1| transcription-repair coupling factor [Leuconostoc argentinum KCTC
           3773]
          Length = 1176

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 136/327 (41%), Gaps = 58/327 (17%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF------FPH 219
           + +  QLLLGV GS +  ++A + +A  R  +V+   ++ A QL ++          FP 
Sbjct: 23  TEDSTQLLLGVHGSARAASIAALYQAQPRQMLVVTDTQVHADQLLADLSQLTAAAMGFP- 81

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
                                 +  +  E +I+    RM+  AT   L R + ++V  V+
Sbjct: 82  ---------------------AEESLATEMAISSPELRMQRVATLLALRRQEKVIV--VT 118

Query: 280 CIYGIGSV----ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            + G+  +    E+  Q  + L +G++    ++ ++L+   Y    +    G F   G  
Sbjct: 119 SLAGVERLLPKPETLDQASLNLAVGETYALDDIKATLMMMGYTPTKLVQTPGEFAQRGSI 178

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV---TPRPTL 392
           I+I+P   E+   R+  F +++++I  F   T ++  N ET  I   + ++   T     
Sbjct: 179 IDIYPFTGEEPV-RLDFFDDELDQIKSFDVSTQKRTGNFETATIEPVTDFIVSETDYTAA 237

Query: 393 NTAMKYIKEELKMRLIELEKE----GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
             +++    + +  L+ +EK+    G  L  Q LE R+  +            +  Y+ +
Sbjct: 238 AASIEAAFNDYRRELVGVEKKHATTGFALTHQLLETRVREN-----------RLLPYATH 286

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDE 475
             G   GE   TL  Y   D LL +DE
Sbjct: 287 FFG---GE--TTLLAYFQPDHLLILDE 308



 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H ++   +   I+ D   G +DVLV   ++  G+DIP    + + +AD  G    
Sbjct: 857 RVAAIHGQMSETQLESILFDFLNGNYDVLVTTTIIETGVDIPNANTLIVENADHMGL--- 913

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 914 -SQLYQLRGRVGRS 926


>gi|308485730|ref|XP_003105063.1| hypothetical protein CRE_20763 [Caenorhabditis remanei]
 gi|308257008|gb|EFP00961.1| hypothetical protein CRE_20763 [Caenorhabditis remanei]
          Length = 401

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 8/111 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + +L   T+R  + LT+ + E N  V  MH +++  +R E++++ R
Sbjct: 258 DLYDTLTIT-----QAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  LV++++ D      ++   I  IGR+ R
Sbjct: 313 AGTTRVLISTDVWARGLDVPQVSLVSVINYD---LPNNRELYIHRIGRSGR 360


>gi|172087806|ref|YP_206418.2| transcription-repair coupling factor [Vibrio fischeri ES114]
 gi|197337336|ref|YP_002158058.1| transcription-repair coupling factor [Vibrio fischeri MJ11]
 gi|171902389|gb|AAW87530.2| transcription-repair coupling factor [Vibrio fischeri ES114]
 gi|197314588|gb|ACH64037.1| transcription-repair coupling factor [Vibrio fischeri MJ11]
          Length = 1151

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 24/217 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           +TGS     +A++ +  Q P IV      LA +L +E  N F  NAV+ F  +    YD 
Sbjct: 24  LTGSSLALAIAEIEQQHQGPIIVAVTEPQLAFRLQNEI-NQFSQNAVDVFPDWETLPYDS 82

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY- 290
           + P             +  I++++ R+ H     L ++ +  ++  VS +    S +S+ 
Sbjct: 83  FSPH------------QDIISDRLSRLYH-----LPQQKNGTLIVPVSTLLQRQSPQSFL 125

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            +  + + +GD +   +L   L K  Y   D  +  G +   G  I++FP       +R+
Sbjct: 126 HKHALVVNVGDRLSFDKLKLQLEKSGYLHVDQVMSHGEYASRGSIIDLFPMG-NGHPFRI 184

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
             F ++I+ I +F P   + I  V++I +     + T
Sbjct: 185 DFFDDEIDSIRQFDPENQRTIEEVKSINLLPAHEFPT 221


>gi|327554933|gb|AEB00820.1| vasa-like protein [Penaeus monodon]
          Length = 707

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+ V  KR+A+ +  YL E+N R   MH +    +R + + + R G +++LV   +  
Sbjct: 522 KILVFVEQKRVADFVGTYLCEKNFRATTMHGDRYQAQREQALTEFRTGVYNILVATAVAA 581

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLDI   G+V   D  KE         +  IGR  R
Sbjct: 582 RGLDIKGIGVVVNYDLPKE-----IDEYVHRIGRTGR 613


>gi|322417709|ref|YP_004196932.1| transcription-repair coupling factor [Geobacter sp. M18]
 gi|320124096|gb|ADW11656.1| transcription-repair coupling factor [Geobacter sp. M18]
          Length = 1157

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 16/195 (8%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF--PHNAVEYFVSYYDYY 232
           G+ GS   + ++++ E    P +V+  ++  A +L  E + F   P + + +    +D  
Sbjct: 27  GLEGSAPAYLLSRLSENGAPPLVVLTADQESADELARELQFFASRPESVLPF--PAWDVT 84

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
             EA  P  D   E+ +++   +D       R+       IV+   S +  +   E+   
Sbjct: 85  PFEAASPHPDIVGERLNALVRLLD----GGARA-------IVLPVASALQRVIPRETLGG 133

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
           +   L  G+ +E++ L+  LVK  Y    +   RGTF V G  ++IFP   E    R+  
Sbjct: 134 VCQYLVAGEELERENLVEKLVKLGYSHVPLVEDRGTFSVRGGILDIFPPDQEK-PVRIEF 192

Query: 353 FGNDIEEISEFYPLT 367
           FG+ +E +  F P++
Sbjct: 193 FGDLVETMRLFDPVS 207


>gi|42518569|ref|NP_964499.1| RNA helicase [Lactobacillus johnsonii NCC 533]
 gi|41582854|gb|AAS08465.1| probable RNA helicase [Lactobacillus johnsonii NCC 533]
          Length = 461

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++LT+YL E+ ++V  +H  +   ER  IIR +R G++  +V  +L   G+D+P 
Sbjct: 256 TKKTVDELTDYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPG 315

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +  K+        +I  IGR  RN
Sbjct: 316 VSLVVNYEIPKD-----LEFVIHRIGRTGRN 341


>gi|116669806|ref|YP_830739.1| transcription-repair coupling factor [Arthrobacter sp. FB24]
 gi|116609915|gb|ABK02639.1| transcription-repair coupling factor [Arthrobacter sp. FB24]
          Length = 1222

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 108/269 (40%), Gaps = 39/269 (14%)

Query: 101 PSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQL 160
           PS+  L R +  D    +         S S    S+D   +Q+     P+G + A +A++
Sbjct: 6   PSLTGLRRALAGDTTFARV----QAEASRSFGTRSED---YQISA---PAGLRAALLAEM 55

Query: 161 ---LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
              L  +HS +          +G    +A  + A  R A            L +  + F 
Sbjct: 56  SDGLAALHSGDGASPAASNDDAGAPLVLA--VTATGREA----------EDLTAALRAFL 103

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS---LLERNDCIV 274
           P  +V  F S+ +    E   PR+DT   + S +     R+ H  T S   L      + 
Sbjct: 104 PAGSVAEFPSW-ETLPHERLSPRSDTVGRRLSVLR----RLAHPETASGGPLRVVVAPVR 158

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
                 + G+G ++      V LK+G      +++ SL    Y R D+   RG F V G 
Sbjct: 159 AVVQPIVAGLGDLKP-----VTLKVGQDAPFSDVVRSLSDAAYARVDMVTHRGEFAVRGG 213

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            +++FP   ED   RV  FG++++++  F
Sbjct: 214 ILDVFPP-TEDHPIRVEFFGDEVDQMRWF 241


>gi|238922870|ref|YP_002936383.1| transcription-repair coupling factor [Eubacterium rectale ATCC
           33656]
 gi|238874542|gb|ACR74249.1| transcription-repair coupling factor [Eubacterium rectale ATCC
           33656]
          Length = 1177

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 132/311 (42%), Gaps = 23/311 (7%)

Query: 168 EKVQLLLGVTGS--GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           EK   L+ VTG    +   M       ++  +++   +  A +LY E+ +FF    V   
Sbjct: 22  EKSSGLISVTGCIDAQKSQMIYAFGGHRKNKLIVTFGEQKAKELYDEY-SFFDKEVV--- 77

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-I 284
                      Y P  D    +       +   R  A +++ E+    +V++   +   +
Sbjct: 78  -----------YYPSKDVLFYQSDIRGNLLTAERIRALKAIREQERVTLVTTFDALMNTM 126

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
             +E   + ++ L+ G  ++ KE+ ++L++  Y+++      G F V G  +++FP   E
Sbjct: 127 APIEKMWENVLTLEQGQLLDLKEIQAALIRMGYEKEYQVQTMGQFSVRGGILDVFPL-TE 185

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           +   R+ ++G++I+ I  F   + + I N++ + IY  +  V         +  +K E K
Sbjct: 186 ENPIRIELWGDEIDTIRYFDCESQKSIENIDRVSIYPAAELVLSDEEKAGGIDKLKAEAK 245

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
               +L K+ +  EA R+   +  D E+ E  G          +L+     E    L  +
Sbjct: 246 RVSDKLRKQMKTEEAHRV--TVMAD-ELTEEWGELSMYAGMDAFLS-YFFDERVGILDYF 301

Query: 465 IPEDSLLFVDE 475
            P DSL+F DE
Sbjct: 302 NPSDSLIFFDE 312



 Score = 37.4 bits (85), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 554 LVDPPVEIRSARTQVEDVYDE-----INLAAQQGLRILLTVLTKRMAEDLTEYLYER--N 606
           L +PP++    +T V +  DE     IN    +  ++       R   D+T  L E   +
Sbjct: 802 LEEPPMDRVPIQTYVMEYNDELVREAINRELARNGQVYYVYNKVRDIADITAKLQELVPD 861

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
             V + H ++K  E   I+     G+ DVLV   ++  GLDI     + I DAD  G   
Sbjct: 862 ATVAFAHGQMKETELERIMYRFINGEIDVLVSTTIIETGLDISNVNTMIIHDADNMGL-- 919

Query: 667 SKTSLIQTIGRAARN 681
             + L Q  GR  R+
Sbjct: 920 --SQLYQLRGRVGRS 932


>gi|297559048|ref|YP_003678022.1| transcription-repair coupling factor [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843496|gb|ADH65516.1| transcription-repair coupling factor [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 1201

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 16/176 (9%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP + +   +  A+ L        P ++V  F ++ +    E   PR+DT  ++ + + 
Sbjct: 56  QRPVLAVTATEREASDLADALGCLLPEDSVALFPAW-ETLPHERLSPRSDTVGQRLAVLR 114

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKE 307
               R+ H      L     +VV+ V  +      G+G +E      V+++ GD V  +E
Sbjct: 115 ----RLAHPDPSDPLTTPLRVVVAPVRSVLQPLVSGLGDLEP-----VRIRPGDEVPLEE 165

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           ++ +L    Y R D+   RG   V G  +++FP   E+   R+  +G+ +E++  F
Sbjct: 166 VVQALANTGYARVDLVEKRGDMAVRGGILDVFPP-TEEHPLRLEFWGDTVEDVRYF 220


>gi|162329441|ref|YP_001604241.1| putative helicase [Acidianus filamentous virus 7]
 gi|157310339|emb|CAJ31636.1| putative helicase [Acidianus filamentous virus 7]
          Length = 564

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 589 VLTKRM--AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           ++ +R+  A+ L+E   +  I   Y+ S+ K  ER+  I +L+ GK   L+  +L  EGL
Sbjct: 433 IIVRRISTAKKLSELFNQNGISADYVTSQTKLEERMRKIENLKNGKIQTLIATSLADEGL 492

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           DIP   L+ +L   K     S+  L+Q IGR  R   +K
Sbjct: 493 DIPNLKLIILLSQGK-----SRIKLVQRIGRVMRPYKNK 526


>gi|121535095|ref|ZP_01666912.1| transcription-repair coupling factor [Thermosinus carboxydivorans
           Nor1]
 gi|121306345|gb|EAX47270.1| transcription-repair coupling factor [Thermosinus carboxydivorans
           Nor1]
          Length = 1109

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 92/225 (40%), Gaps = 15/225 (6%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           A+ Q L    +  K  L+ G+TG+ K+  +A       R   ++  +    +QL S+   
Sbjct: 13  ALQQALAACTAANKASLIYGLTGTQKSVLLAAAYHKKPRATFIITVSGESLSQLKSDLAT 72

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
             P               P   +P  D      ++ + ++   R      LL     IV+
Sbjct: 73  LLPA-------------APVLELPALDFVTFSVTAKSLELTAQRLDIYSRLLGGEPVIVL 119

Query: 276 SSVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           ++   I       E      V L  G  V+ ++LL++LV+  Y+R D     G F   G 
Sbjct: 120 ATAEAIMQKAPPKEELVNSRVSLAAGGIVQLEKLLATLVRFGYERVDQVDNVGQFSARGG 179

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            I+IFP +      R+ +FG++I+ + EF P T + I  ++   I
Sbjct: 180 IIDIFPLN-RPYPLRLELFGDEIDSLREFDPATQRSIGALDKADI 223



 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           +M   L+E L +  I V +       LER+ +  D   G +D+LV  +++  GLD+P   
Sbjct: 774 KMHSRLSEILPDARIGVAHGQMSEDRLERVML--DFYEGNYDILVCTSIIESGLDVPNAN 831

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + + DADK G       L Q  GR  R 
Sbjct: 832 TIIVYDADKFGL----AQLYQMRGRVGRT 856


>gi|329666845|gb|AEB92793.1| putative RNA helicase [Lactobacillus johnsonii DPC 6026]
          Length = 461

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++LT+YL E+ ++V  +H  +   ER  IIR +R G++  +V  +L   G+D+P 
Sbjct: 256 TKKTVDELTDYLEEQGLKVTKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPG 315

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +  K+        +I  IGR  RN
Sbjct: 316 VSLVVNYEIPKD-----LEFVIHRIGRTGRN 341


>gi|268318980|ref|YP_003292636.1| ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785]
 gi|262397355|emb|CAX66369.1| ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785]
          Length = 461

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++LT+YL E+ ++V  +H  +   ER  IIR +R G++  +V  +L   G+D+P 
Sbjct: 256 TKKTVDELTDYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPG 315

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +  K+        +I  IGR  RN
Sbjct: 316 VNLVVNYEIPKD-----LEFVIHRIGRTGRN 341


>gi|302307229|ref|NP_983823.2| ADL273Cp [Ashbya gossypii ATCC 10895]
 gi|299788899|gb|AAS51647.2| ADL273Cp [Ashbya gossypii ATCC 10895]
          Length = 623

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 9/112 (8%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           LAA  G   L+ V TKRMA+ LT++L  +N+    +H +    ER   +   R G+ +VL
Sbjct: 397 LAASDGGLTLVFVETKRMADALTDFLIMQNLSATAIHGDRTQAERERALAFFRTGRANVL 456

Query: 637 VGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D  +D + +       +  IGR  R  N+ +
Sbjct: 457 VATAVAARGLDIPNVTHVINYDLPSDIDDY-------VHRIGRTGRAGNTGL 501


>gi|258424461|ref|ZP_05687340.1| transcription-repair coupling factor [Staphylococcus aureus A9635]
 gi|257845330|gb|EEV69365.1| transcription-repair coupling factor [Staphylococcus aureus A9635]
          Length = 1168

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   N+E + I   S Y+     ++    ++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIS----HLKEELKSA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ +Y
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|50913352|ref|YP_059324.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS10394]
 gi|50902426|gb|AAT86141.1| Transcription-repair coupling factor [Streptococcus pyogenes
           MGAS10394]
          Length = 1167

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 98/209 (46%), Gaps = 12/209 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G++GS K   +A      Q+  +V+   +    +L S+  +      V  F  + D
Sbjct: 26  QLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                 ++  +   ++K  S  E +  +R+  ++ +L     + +SS+  +     V + 
Sbjct: 84  DVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSSLRTLLPNPDVFTK 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           SQ  +QL +G+  +   L   L+   Y++    I  G F   GD ++I+    +++ +R+
Sbjct: 137 SQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             FG+DI+ I +FYP T +    +E I I
Sbjct: 194 EFFGDDIDSIRQFYPETQKSFEQLEGIFI 222


>gi|139472894|ref|YP_001127609.1| transcription-repair coupling factor [Streptococcus pyogenes str.
           Manfredo]
 gi|134271140|emb|CAM29350.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes str. Manfredo]
          Length = 1167

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 98/209 (46%), Gaps = 12/209 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G++GS K   +A      Q+  +V+   +    +L S+  +      V  F  + D
Sbjct: 26  QLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                 ++  +   ++K  S  E +  +R+  ++ +L     + +SS+  +     V + 
Sbjct: 84  DVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSSLRTLLPNPDVFTK 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           SQ  +QL +G+  +   L   L+   Y++    I  G F   GD ++I+    +++ +R+
Sbjct: 137 SQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             FG+DI+ I +FYP T +    +E I I
Sbjct: 194 EFFGDDIDSIRQFYPETQKSFEQLEGIFI 222


>gi|166714767|gb|ABY88097.1| UvrB [Stenotrophomonas sp. LMG 11000]
          Length = 60

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 36/54 (66%)

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
           I++FP+  +  A R+ +F  ++E+I+ F PLTG+ +RN++   +Y  +HY T R
Sbjct: 2   IDVFPAESDSEALRLELFDGEVEKITLFDPLTGETLRNMQRFTVYPKTHYATTR 55


>gi|306826404|ref|ZP_07459718.1| transcription-repair coupling factor [Streptococcus pyogenes ATCC
           10782]
 gi|304431399|gb|EFM34394.1| transcription-repair coupling factor [Streptococcus pyogenes ATCC
           10782]
          Length = 1167

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 98/209 (46%), Gaps = 12/209 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G++GS K   +A      Q+  +V+   +    +L S+  +      V  F  + D
Sbjct: 26  QLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                 ++  +   ++K  S  E +  +R+  ++ +L     + +SS+  +     V + 
Sbjct: 84  DVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSSLRTLLPNPDVFTK 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           SQ  +QL +G+  +   L   L+   Y++    I  G F   GD ++I+    +++ +R+
Sbjct: 137 SQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             FG+DI+ I +FYP T +    +E I I
Sbjct: 194 EFFGDDIDSIRQFYPETQKSFEQLEGIFI 222


>gi|302543645|ref|ZP_07295987.1| DEAD/DEAH family helicase [Streptomyces hygroscopicus ATCC 53653]
 gi|302461263|gb|EFL24356.1| DEAD/DEAH family helicase [Streptomyces himastatinicus ATCC 53653]
          Length = 1046

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
            +R L   +T   A  + ++  +  I  + +     T ER + + DLR GK   L  ++L
Sbjct: 561 AMRALGFCVTVAHAHFMADFFRQAGISAQALDGSTPTAERAQALHDLREGKVQALFSVDL 620

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             EGLDIP+   + +L         S T  +Q +GR  R    K +L
Sbjct: 621 FNEGLDIPDVDTLLLLRPTA-----SATVFLQQLGRGLRRTPDKAVL 662


>gi|153006821|ref|YP_001381146.1| type III restriction protein res subunit [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030394|gb|ABS28162.1| type III restriction protein res subunit [Anaeromyxobacter sp.
           Fw109-5]
          Length = 1418

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L    G+R L+   +   AE    +L  R +RVR +HS+  + +R   + DL  G+ D +
Sbjct: 564 LGEHGGMRTLVFCCSIPHAEFAKRWLEGRGVRVRAVHSDPGSDDRSRALADLAAGRIDAV 623

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             ++L  EG+D+P    V +L   +     S    +Q +GR  R    K
Sbjct: 624 CAVDLFNEGVDVPLVDRVVMLRPTE-----SPVVFLQQLGRGLRIAEGK 667


>gi|319411502|emb|CBQ73546.1| related to DRS1-RNA helicase of the DEAD box family [Sporisorium
           reilianum]
          Length = 932

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 10/151 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++ V +K++A  L        +    +H ++   +RI+ + D R GK D L+  +L  
Sbjct: 611 QVIIFVRSKKLAHQLKIVFGLLGLSAGELHGDLSQEQRIDALTDFRDGKVDFLLATDLAS 670

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLDI   G+  +++ D  G   +    +    RA RN  + V L  +   + ++LAI  
Sbjct: 671 RGLDIK--GVQTVINYDMPGQFEAYLHRVGRTARAGRNGRA-VTLVGEADRRMLKLAI-- 725

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
                +K      KH I P +V  K++E ++
Sbjct: 726 -----KKSSAEQIKHRIIPAAVASKMLETLE 751


>gi|302422468|ref|XP_003009064.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261352210|gb|EEY14638.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 532

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 13/140 (9%)

Query: 573 DEIN-------LAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           D+IN       LA  QG R  L+  +       LT+      +  R++  +  T+ER EI
Sbjct: 143 DQINEITVRSWLARAQGRRSTLVFCVDLAHVAGLTQKFRRFGLDARFVTGDTPTIERSEI 202

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R  R G+F VLV   +  EG DIP    + +         RS+  L+Q IGR  R    
Sbjct: 203 LRAFRNGEFPVLVNCGVFTEGTDIPNIDCIILARP-----TRSRNLLVQMIGRGMRLHAG 257

Query: 685 KVILYADTITKSIQLAIDET 704
           K   +   +  S++  I  T
Sbjct: 258 KTNCHIIDMVSSLETGIVTT 277


>gi|218679341|ref|ZP_03527238.1| excinuclease ABC subunit B [Rhizobium etli CIAT 894]
          Length = 201

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 57/145 (39%), Gaps = 50/145 (34%)

Query: 33  KQLEVDKTMVA-DAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGE-------------- 77
           KQLE D      ++ R I S+AGKHRK        H     A   E              
Sbjct: 36  KQLEADAEAAGVESQREIASKAGKHRKKVENEARKHAEAVAARSAEGRKPERASEPMRGP 95

Query: 78  ----FQSQSSISMS------------EKQTR-------------------EISEQTMTPS 102
                QS  S+S S            + +TR                    IS   +T +
Sbjct: 96  RGAKAQSAGSVSASKTARGVSIGGSSDPKTRAAAGLNPVAGLDISLEDAGSISPGGVTAT 155

Query: 103 VQALARLIQSDNPLLKNGKIWTPHR 127
           V+AL+ LI+S NPL KNGKIWTPHR
Sbjct: 156 VEALSALIESGNPLHKNGKIWTPHR 180


>gi|238062748|ref|ZP_04607457.1| transcription-repair coupling factor [Micromonospora sp. ATCC
           39149]
 gi|237884559|gb|EEP73387.1| transcription-repair coupling factor [Micromonospora sp. ATCC
           39149]
          Length = 1229

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 18/177 (10%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RP + +      A  L S   +  P   V  F S+ +    E   PR+DT   + + +  
Sbjct: 72  RPVLAVTATSREADDLASALGSLLPPEQVAVFPSW-ETLPHERLSPRSDTVGRRLAVLR- 129

Query: 254 QIDRMRHSATRSLLERNDC--IVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQK 306
              R+ H        R     +VV+ V  +      G+G +E      V+L  GD  + +
Sbjct: 130 ---RLAHPDAADARGRTGPLRVVVAPVRSLLQPQLKGLGDLEP-----VRLAAGDEADLE 181

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           ++   L    Y R D+   RG F V G  +++FP   E  + RV  +G+++EEI  F
Sbjct: 182 QVARRLADMAYARVDLVTKRGEFAVRGGILDVFPPTDEHPS-RVEFWGDEVEEIRTF 237


>gi|57233929|ref|YP_181993.1| transcription-repair coupling factor [Dehalococcoides ethenogenes
           195]
 gi|57224377|gb|AAW39434.1| transcription-repair coupling factor [Dehalococcoides ethenogenes
           195]
          Length = 1148

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 141/333 (42%), Gaps = 42/333 (12%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P  DQ  +   L + +   +K +  + V  +G+ F++A V   ++ P +++         
Sbjct: 8   PLIDQSPSFNSLFEAL---DKGEADISVLDAGRGFSLAAVYRKLKCPMLIITSQ------ 58

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPE-AYVPRTD--TYIEKESSINEQIDRMRHSAT-R 264
                    P  A E  V    Y   E  ++P      Y    S  N  +++MR +    
Sbjct: 59  ---------PERARELLVQIAAYTGEEPGFLPDPSLLPYQRAVSDRNTSLEKMRLAGILG 109

Query: 265 SLLERNDC-IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
             +   D  I+VS+V  +     S E + Q  +Q+  G   E ++L+    +  Y++++I
Sbjct: 110 GFIRSQDAQIIVSAVPALLQRYVSPEIFKQSFLQVWTGLETEPQDLIRRFQQLGYRQENI 169

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             I GT+   G  ++IFP + ED   R+  FGN +E +  F P   Q  R+ +++    N
Sbjct: 170 VEIPGTYSRRGGILDIFP-YTEDNPVRLEFFGNTLESLRVFDP---QSQRSGKSL----N 221

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
              ++P   L    +   +EL  RL  L  +    E  R    ++ D+  L+     +  
Sbjct: 222 ELTISPASELFHLGQLPVKELNARLEALLTDNLNPEFSR---TLSADIARLKEGLKPEYP 278

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           + ++             ++F+Y+P D+L+ +DE
Sbjct: 279 DFFAPLFNTS-------SIFDYLPADALVVLDE 304


>gi|332798184|ref|YP_004459683.1| transcription-repair coupling factor [Tepidanaerobacter sp. Re1]
 gi|332695919|gb|AEE90376.1| transcription-repair coupling factor [Tepidanaerobacter sp. Re1]
          Length = 1178

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/279 (20%), Positives = 119/279 (42%), Gaps = 15/279 (5%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           GV+ S + + +A +        +V+  + + A +L  +   F   + V  F         
Sbjct: 32  GVSDSQRAYLIAALKNRAVPQILVVTADSLEAKKLAEDLLFFLSADEVAVF--------- 82

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQM 293
               P +     + ++ + +    R     +LL +   +VV+ + + +  + + +   + 
Sbjct: 83  ----PASSVLPYETAARSPEFTAKRLKVMENLLMKKPMVVVAPIQALLTKVVAPDIVKKF 138

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            ++LK+GD +   +++S L    Y+R ++   +G F V G  ++I+P   ++  +R+  F
Sbjct: 139 TLELKVGDIIAMDDIVSKLSAMGYERVEMIEAQGQFAVRGGILDIYPL-TQEYPYRLEFF 197

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
            ++I+ I EF     + I  ++ I +      V    T  +A   I EELK R   L   
Sbjct: 198 DDEIDSIREFLTEDQRSIDKLDKIFVGPAREVVYDEDTAKSAAIAIAEELKQRRNLLNSL 257

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
           G    A+ L +++   +  L      +S E Y  +L  R
Sbjct: 258 GHPELAEHLAEKVEEHIGKLSNGLFFESAELYISHLYPR 296


>gi|300362252|ref|ZP_07058428.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           gasseri JV-V03]
 gi|300353243|gb|EFJ69115.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           gasseri JV-V03]
          Length = 464

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++LT+YL E+ ++V  +H  +   ER  IIR +R G++  +V  +L   G+D+P 
Sbjct: 259 TKKTVDELTDYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPG 318

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +  K+        +I  IGR  RN
Sbjct: 319 VSLVVNYEIPKD-----LEFVIHRIGRTGRN 344


>gi|326385186|ref|ZP_08206853.1| transcription-repair coupling factor [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326196090|gb|EGD53297.1| transcription-repair coupling factor [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 1193

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 95/223 (42%), Gaps = 37/223 (16%)

Query: 155 AAIAQLLKGIHSREKV-QLLLGVTG--SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           AA  QL      RE++ Q  L +T   + + F +A++ E  + P +V+  N   A  L +
Sbjct: 17  AAFGQL------RERIGQARLDITAPDAARPFVVAQLAEVSEHPVLVVTANGREADDLTT 70

Query: 212 EFKNFFPHNA-----VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID------RMRH 260
           E     P  A     V  F S+ +    E   P  DT   + + ++   D      R+  
Sbjct: 71  ELAELLPCGAGGTPVVAQFPSW-ETLPHERLSPSADTVGARLAVLSRLADPSVAPLRVVI 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +  RSL++              G+G + +     V L  G   E   L+  LV+  Y+R 
Sbjct: 130 ATVRSLVQ----------PMAPGLGGMRA-----VTLTEGSEAEFDALIEKLVEMAYERV 174

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           D+   RG F V G  ++IFP+   D   RV  +G++I +I  F
Sbjct: 175 DMVGARGEFAVRGGILDIFPT-TADYPVRVEFWGDEITDIRAF 216


>gi|302695009|ref|XP_003037183.1| hypothetical protein SCHCODRAFT_47730 [Schizophyllum commune H4-8]
 gi|300110880|gb|EFJ02281.1| hypothetical protein SCHCODRAFT_47730 [Schizophyllum commune H4-8]
          Length = 518

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 11/106 (10%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E LT+      +  RY++S     ER E+I   R G+F VL+   +L EG DIP    V 
Sbjct: 296 ESLTQAFRSYGVDARYVYSGTPAAERRELIAQFRAGEFPVLINCAILTEGADIPNIDCVV 355

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR------NVNSKVILYADTITK 695
           +         RS+    Q IGR  R        +  +I + DT T+
Sbjct: 356 VARPT-----RSRNVFAQMIGRGMRLSPSTGKTDCHIIDFVDTQTR 396


>gi|66804721|ref|XP_636093.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
 gi|60464394|gb|EAL62541.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
          Length = 2417

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 17/123 (13%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE----------VKTLERIEIIRDLR 629
           Q+ LRIL+ V T+  A +LT  L +   +  Y+H++          + + ++  IIR  R
Sbjct: 651 QKDLRILVFVETRFGASNLTSMLKKEPFQ-EYLHTKRLVGHNGVDGMDSEKQQSIIRKFR 709

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVIL 688
            GK  ++V  N+L EG+D+ +C +V   D      + S  SLIQ  GRA ++N +  +I+
Sbjct: 710 DGKCRLIVTTNVLEEGIDVQDCNIVICYDG-----ILSLKSLIQRRGRARSKNESKFIII 764

Query: 689 YAD 691
           Y D
Sbjct: 765 YND 767


>gi|254388765|ref|ZP_05003997.1| transcriptional-repair coupling factor [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702484|gb|EDY48296.1| transcriptional-repair coupling factor [Streptomyces clavuligerus
           ATCC 27064]
          Length = 1187

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 101/234 (43%), Gaps = 14/234 (5%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           A+A+ ++      +  + L    + + F +A +     RP + +      A  L +  ++
Sbjct: 26  ALAEAVEAARGGTRTHVDLVGPPAARPFAVAALAREAGRPVLAVTATGREAEDLAAALRS 85

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
             P   V  + ++ +    E   PR+DT   + + +     R+ H A          +VV
Sbjct: 86  LLPEEGVAEYPAW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPAADDPAAGPVSVVV 140

Query: 276 SSVSCIYGIGSVESYSQMI-VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           + +  +     V+   +++ V L+ G   +  E++ +L    Y R ++   RG F V G 
Sbjct: 141 APIRSVLQP-QVKGLGELVPVALRTGQQADLDEVVDALAAAAYSRVELVEKRGEFAVRGG 199

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
            +++FP   E+   RV  +G+DIEEI  F      KI +  ++++  +  +  P
Sbjct: 200 ILDVFPP-TEEHPLRVEFWGDDIEEIRYF------KIADQRSLEVAEHGLWAPP 246


>gi|145218895|ref|YP_001129604.1| type III restriction enzyme, res subunit [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205059|gb|ABP36102.1| type III restriction enzyme, res subunit [Chlorobium
           phaeovibrioides DSM 265]
          Length = 556

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 10/124 (8%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE L      R ++   +HS++   +R + +   R+G  D+L+ I +L EG+DIPE  LV
Sbjct: 390 AERLQPLFASRGVKTALLHSQLPREQRFKNLSGFRMGHIDLLISIEMLNEGIDIPEVNLV 449

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK-----VILYADTITKSIQLAIDETTRRRE 709
           A +         S+   +Q +GR  R    K     +   AD    +  L I+   + R 
Sbjct: 450 AFMRVT-----HSRRIFLQQLGRGLRISKGKENVLVLDFVADIRRIAAGLEINRLAKERS 504

Query: 710 KQLE 713
             +E
Sbjct: 505 AGME 508


>gi|14520414|ref|NP_125889.1| DNA repair protein RAD25 [Pyrococcus abyssi GE5]
 gi|5457629|emb|CAB49120.1| DNA/RNA repair helicase [Pyrococcus abyssi GE5]
          Length = 446

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 8/102 (7%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A QG R+L+ V      E L + L ER +   ++ S+  +  R EI+   + G+  VLV 
Sbjct: 311 ANQGHRVLIDVKRIDHGEILVKMLKERGVNAEFLSSQ--SPNRWEILEKFKNGEIPVLVS 368

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LL+EG+DIPE   + +    K     S    IQTIGRA R
Sbjct: 369 -TLLKEGVDIPEISAIILAGGGK-----SDVMTIQTIGRALR 404


>gi|257057197|ref|YP_003135029.1| transcription-repair coupling factor Mfd [Saccharomonospora viridis
           DSM 43017]
 gi|256587069|gb|ACU98202.1| transcription-repair coupling factor Mfd [Saccharomonospora viridis
           DSM 43017]
          Length = 1199

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 27/195 (13%)

Query: 180 GKTFTMAKVIEAMQ------RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           G T T   V+ A+       RP + + P    A +L +  ++    N V  F S+ +   
Sbjct: 42  GSTATHQLVVAALAADRGAGRPVLAVTPTGRQAEELTAALRSLLGENLVADFPSW-ETLP 100

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVE 288
            E   PR DT + K   +  ++ +  H   R        +VV++V  +      G+G + 
Sbjct: 101 HERLSPRADT-VGKRLEVLRRLAQPDHGGLR--------VVVATVRSLIQPMAPGLGGLH 151

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                 V+L++G   + + +L  LV+  Y R D+   RG F V G  ++IF    E    
Sbjct: 152 P-----VELRVGQESDFEAVLDQLVELAYTRVDMVEKRGEFAVRGGILDIFGPTAEH-PH 205

Query: 349 RVSMFGNDIEEISEF 363
           R+  +G+++ EI  F
Sbjct: 206 RIEFWGDEVSEIRAF 220


>gi|294813058|ref|ZP_06771701.1| Transcriptional-repair coupling factor [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325657|gb|EFG07300.1| Transcriptional-repair coupling factor [Streptomyces clavuligerus
           ATCC 27064]
          Length = 1206

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 101/234 (43%), Gaps = 14/234 (5%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           A+A+ ++      +  + L    + + F +A +     RP + +      A  L +  ++
Sbjct: 45  ALAEAVEAARGGTRTHVDLVGPPAARPFAVAALAREAGRPVLAVTATGREAEDLAAALRS 104

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
             P   V  + ++ +    E   PR+DT   + + +     R+ H A          +VV
Sbjct: 105 LLPEEGVAEYPAW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPAADDPAAGPVSVVV 159

Query: 276 SSVSCIYGIGSVESYSQMI-VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           + +  +     V+   +++ V L+ G   +  E++ +L    Y R ++   RG F V G 
Sbjct: 160 APIRSVLQP-QVKGLGELVPVALRTGQQADLDEVVDALAAAAYSRVELVEKRGEFAVRGG 218

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
            +++FP   E+   RV  +G+DIEEI  F      KI +  ++++  +  +  P
Sbjct: 219 ILDVFPP-TEEHPLRVEFWGDDIEEIRYF------KIADQRSLEVAEHGLWAPP 265


>gi|29831745|ref|NP_826379.1| ATP-dependent helicase [Streptomyces avermitilis MA-4680]
 gi|29608862|dbj|BAC72914.1| putative ATP-dependent helicase [Streptomyces avermitilis MA-4680]
          Length = 973

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 7/125 (5%)

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           AR  V+ + D+++      +R L   + K  A  + ++  E   +   + S+     R +
Sbjct: 472 ARIVVKQIQDKVSNPG--AMRALGFCVNKAHAHFMADFFREAGFQAAALDSDSPAGVRAQ 529

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            + DLR GK  V+  ++L  EGLDIP+   + +L         S T  +Q +GR  R   
Sbjct: 530 ALSDLRNGKLQVIFSVDLFNEGLDIPDVDTLLLLRPTG-----SATVFLQQLGRGLRRTE 584

Query: 684 SKVIL 688
           SK +L
Sbjct: 585 SKPVL 589


>gi|293380357|ref|ZP_06626428.1| transcription-repair coupling factor [Lactobacillus crispatus
           214-1]
 gi|290923040|gb|EFD99971.1| transcription-repair coupling factor [Lactobacillus crispatus
           214-1]
          Length = 1164

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 15/196 (7%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + ++   +  P I++  N+  A  LY E         V+ F   
Sbjct: 24  KNSLITGANAGAFSLLLKQITTKLAAPLILIEENESKAQNLYGELSAIMADETVQIF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                P      T T +     ++ +I      A   LL     IVV++   + Y + + 
Sbjct: 81  -----PVDATIATQTAVSSPDELSSRI-----QALNFLLSGKAGIVVTTPQGLQYKLTNP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             ++Q     + G   E KEL   L+   Y+R  + +  G F + GD ++++P   E+  
Sbjct: 131 TDFTQAKRSFEPGQEYELKELNEWLLASGYQRDSLVVRPGEFAIRGDILDVYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEF 363
            R+  FG++I+ I EF
Sbjct: 190 VRIEFFGDEIDTIKEF 205


>gi|296875514|ref|ZP_06899586.1| transcription-repair coupling factor [Streptococcus parasanguinis
           ATCC 15912]
 gi|296433438|gb|EFH19213.1| transcription-repair coupling factor [Streptococcus parasanguinis
           ATCC 15912]
          Length = 1167

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 106/216 (49%), Gaps = 19/216 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           +L+LG++ + K   MA   +++++ A+++  +   A +L S+F        V  F+    
Sbjct: 26  ELILGLSATTKAIVMASAFDSIEK-AVLITSSYNEAERLASDFIALLGEEKVHTFLG--- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DCIVVSSVSCI-YGIGSVE 288
                      D  + +    +++    R  A   L + +   I+V++VS I   + S +
Sbjct: 82  ----------DDNPLAEFVFASQERQFARLEALNFLCQEDRQGILVTNVSGIKLLLPSPK 131

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA- 347
            ++  I QLK+G  ++   L  +L K  Y++    + +G F + GD ++IF   +E +  
Sbjct: 132 VFASSIFQLKVGQEIDLTTLSDTLQKIGYQKVSQVLQQGEFSLRGDILDIF--EIEQLKP 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
           +R+  FG++I+ I  F P + + + NVE +++ A S
Sbjct: 190 YRIEFFGDEIDGIRIFDPESQRSVENVEEVQLKAVS 225



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++ K + S R   +LL+G  G GKT   M    +A+   +  
Sbjct: 604 FEQDFPYIETDDQLRSIEEIKKDMESNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQV 663

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVE 223
            V+ P  +LA Q Y+ FK  F   AVE
Sbjct: 664 AVLVPTTVLAQQHYANFKERFESFAVE 690


>gi|33861396|ref|NP_892957.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33633973|emb|CAE19298.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 1171

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 136/319 (42%), Gaps = 47/319 (14%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I +L+K I    ++ ++ G +   K+  +  +     +  ++++PN+ +A + Y  F + 
Sbjct: 16  IIELVKRIKHNNELNII-GSSRYAKSIIINSIANKENKDILLISPNEEIAYKWYGYFDSI 74

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              N +        YY P   +P       KE+  + Q+  +     +   E N  I+ +
Sbjct: 75  DNRNVL--------YYPPSENLPYASINRSKETEYS-QLSVISKIIKKERKELN-IIITT 124

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
             S    +  +  + + I  L  G+ ++ KEL   LV   Y ++++    G++   G+ I
Sbjct: 125 ERSLQPHLIKINQFKENIFTLIKGNELDIKELTKKLVLLGYNKENLTSQEGSWSRRGEII 184

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +I+P + E +  R+  F N I++I E+ P++ + + +V  ++I      +  R +L    
Sbjct: 185 DIYPVNNE-LPVRIEYFDNIIDKIREYDPVSQRTLDSVNKVEIVQVGFNLLIRKSL---- 239

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
                                  + L ++ T++ E + T        N  RYL      E
Sbjct: 240 -----------------------ENLSEQGTFNSEEITTKN------NLDRYLGVIE--E 268

Query: 457 PPPTLFEYIPEDSLLFVDE 475
            P  L +YI +++L+ +DE
Sbjct: 269 HPSNLLDYINKETLIVIDE 287


>gi|314929229|gb|EFS93060.1| transcription-repair coupling factor [Propionibacterium acnes
           HL044PA1]
          Length = 1194

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 40/206 (19%)

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKIL-----------------AAQLYSEFKNFFPHNAVE 223
           +T T+   + A  RPA+V   ++ L                 A +  +  + +   +AV 
Sbjct: 28  RTPTLDLQVTASARPAVVAVLSRALDGSRRLPVLLVTSTFREAEESVATLETWLGGDAVC 87

Query: 224 YFVSYYDYYQPEAYVPRTDTY------IEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
           Y+ S+ +    E   PRTDT       + +      +  ++  +  RSLL+         
Sbjct: 88  YYPSW-ETLPHERLSPRTDTVGRRMEVLRRLCGTEGEGPQVVVAPVRSLLQPQ------- 139

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
              + G+G ++      V L +G+  +  EL + L+   Y R D+   RG F V G  ++
Sbjct: 140 ---VAGLGRIKP-----VHLAVGEEHDLTELATELINAAYSRVDMVERRGEFAVRGGIVD 191

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEF 363
           +FP  LE    R+  FG+ IEE++ F
Sbjct: 192 VFPPVLEHPV-RIDFFGDKIEEMTSF 216


>gi|222056789|ref|YP_002539151.1| transcription-repair coupling factor [Geobacter sp. FRC-32]
 gi|221566078|gb|ACM22050.1| transcription-repair coupling factor [Geobacter sp. FRC-32]
          Length = 1169

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/228 (19%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G+ GS   + ++++ +   R   ++ P+   A +LY E + +   +    +   +D  
Sbjct: 35  LAGLKGSAPAYILSRLWDEHSRLLFIITPDADTAEELYREMRFYSGSDERVLYFPPWDTA 94

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
             +   P  D   ++ + +   +D            R   ++V   + +  +   ++  Q
Sbjct: 95  PFDTASPHADIVGQRLNVLFRMMD-----------GRAGAVIVPLPALMQKVLPRKTLGQ 143

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
           +   +  G+ VE+  LL  LVK  Y    +   RG F + G  ++IFP  L     R+  
Sbjct: 144 ISQYIVAGEEVERDLLLEKLVKLGYSHVPLVEDRGGFSIRGGILDIFPPDLP-TPVRIEF 202

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
           FG+ ++ I  F P+T + ++ ++ + +  +   V     L      +K
Sbjct: 203 FGDFVDTIRTFDPVTQRSLQPLQELILLPSREVVISEEVLTAFAPRLK 250


>gi|147669732|ref|YP_001214550.1| transcription-repair coupling factor [Dehalococcoides sp. BAV1]
 gi|146270680|gb|ABQ17672.1| transcription-repair coupling factor [Dehalococcoides sp. BAV1]
          Length = 1148

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 132/307 (42%), Gaps = 37/307 (12%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           + V  +G+ F++A V   ++ P +V+      A +L  +             ++ Y   +
Sbjct: 30  ISVLDAGRGFSLAAVYRKLKCPMLVITSQPERARELLEQ-------------IAAYSGEE 76

Query: 234 PEAYVPRTDT--YIEKESSINEQIDRMRHSAT-RSLLERNDC-IVVSSVSCIYG-IGSVE 288
           P  ++P      Y    S  N  +++MR +      +   D  I+V++V  +     S +
Sbjct: 77  P-GFLPDPSLLPYQRAVSDRNSSLEKMRLAGILGGFIRSGDARIIVTAVPALLQRYISPK 135

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            + Q  VQ+  G   E + L+    +  Y+++ I  + GT+   G  ++IFP H ED   
Sbjct: 136 VFEQSFVQVWTGLETEPQNLICRFQQLGYRQESIVEMPGTYSHRGGILDIFP-HTEDNPV 194

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FGN +E +  F P + +  + V       N   ++P   +    +  ++ELK +L 
Sbjct: 195 RLEFFGNTLESLRNFDPQSQRSGKQV-------NELTISPASEIFHLGQLPRQELKNKLD 247

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
            L  +    E  R    ++ D+  L+     +  E ++       P     ++ +Y+P D
Sbjct: 248 ALLTDNLNPEFSR---TLSADINHLQEGLKPEYPEFFA-------PLFNTSSILDYLPAD 297

Query: 469 SLLFVDE 475
           +L+ +DE
Sbjct: 298 ALVVLDE 304


>gi|73748965|ref|YP_308204.1| transcription-repair coupling factor [Dehalococcoides sp. CBDB1]
 gi|73660681|emb|CAI83288.1| transcription-repair coupling factor [Dehalococcoides sp. CBDB1]
          Length = 1148

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 132/307 (42%), Gaps = 37/307 (12%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           + V  +G+ F++A V   ++ P +V+      A +L  +             ++ Y   +
Sbjct: 30  ISVLDAGRGFSLAAVYRKLKCPMLVITSQPERARELLEQ-------------IAAYSGEE 76

Query: 234 PEAYVPRTDT--YIEKESSINEQIDRMRHSAT-RSLLERNDC-IVVSSVSCIYG-IGSVE 288
           P  ++P      Y    S  N  +++MR +      +   D  I+V++V  +     S +
Sbjct: 77  P-GFLPDPSLLPYQRAVSDRNSSLEKMRLAGILGGFIRSGDARIIVTAVPALLQRYISPK 135

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            + Q  VQ+  G   E + L+    +  Y+++ I  + GT+   G  ++IFP H ED   
Sbjct: 136 VFEQSFVQVWTGLETEPQNLICRFQQLGYRQESIVEMPGTYSHRGGILDIFP-HTEDNPV 194

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FGN +E +  F P + +  + V       N   ++P   +    +  ++ELK +L 
Sbjct: 195 RLEFFGNTLESLRNFDPQSQRSGKQV-------NELTISPASEIFHLGQLPRQELKNKLD 247

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
            L  +    E  R    ++ D+  L+     +  E ++       P     ++ +Y+P D
Sbjct: 248 ALLTDNLNPEFSR---TLSADINHLQEGLKPEYPEFFA-------PLFNTSSILDYLPAD 297

Query: 469 SLLFVDE 475
           +L+ +DE
Sbjct: 298 ALVVLDE 304


>gi|70727507|ref|YP_254423.1| transcription-repair coupling factor [Staphylococcus haemolyticus
           JCSC1435]
 gi|123748600|sp|Q4L3G0|MFD_STAHJ RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|68448233|dbj|BAE05817.1| transcription-repair coupling factor [Staphylococcus haemolyticus
           JCSC1435]
          Length = 1169

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 136/312 (43%), Gaps = 39/312 (12%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           L+ G++ S K   +A+     Q+  +++  N   A +L ++   +  H+ V      Y Y
Sbjct: 28  LVTGLSPSAKATIIAEKYLKDQKQMLLITNNLYQADKLETDILQYIDHSEV------YKY 81

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESY 290
                  P  D   E+ S+ + Q+   R     +L      + +  ++ +   +   E +
Sbjct: 82  -------PVQDIMTEEFSTQSPQLMSERVRTLTALAHNKKGLFIVPLNGLKKWLTPFELW 134

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
               + L++G+ ++  E L+ LV   Y+R+ +    G F + G  I+I+P   + V  R+
Sbjct: 135 KDHQITLRVGEDIDVDEFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIGQPV--RI 192

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F  +++ I +F   T +   N+E + I   S YV      +  +++++ ELK      
Sbjct: 193 ELFDTEVDSIRDFDVETQRSNDNIEEVSITTASDYVIT----DDVIQHLQSELKTA---- 244

Query: 411 EKEGRLLEAQR--LEQRITYDLEMLETTGSCQSIEN--YSRYLTGRNPG---EPPPTLFE 463
                  EA R  +++ +  DL+  ET  S +  E   +   L  R      E P TL +
Sbjct: 245 ------YEATRPKIDKSVRNDLK--ETYESFKLFETTFFDHQLLRRLVAFMYEQPSTLID 296

Query: 464 YIPEDSLLFVDE 475
           Y  +D+++  DE
Sbjct: 297 YFAKDAIIVADE 308


>gi|289742973|gb|ADD20234.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 616

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 15/158 (9%)

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
           GS EL     I   Q+I      D   +++S  +Q+ D         +   +I++ V TK
Sbjct: 342 GSLELSANHNI--RQVIEICDENDKETKLKSLLSQIYDT-------GENPGKIIIFVETK 392

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  + L  Y+    +R   +H +    ER  ++R+ R GK ++LV  ++   GLD+   G
Sbjct: 393 RRVDHLVRYIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVD--G 450

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           +  +++ D   + +S    I  IGR  R+ N+K   YA
Sbjct: 451 IKYVINFD---YPQSSEDYIHRIGRTGRS-NTKGTSYA 484


>gi|328945679|gb|EGG39830.1| DNA helicase RecG [Streptococcus sanguinis SK1087]
          Length = 671

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+LT Y + +  +V  +H ++K+ E+  I++D + G+ D+LV   ++  G+++P   +
Sbjct: 484 LEEELTAY-FSQQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R    S  +L A+  T+S
Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582


>gi|14475569|emb|CAC41974.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
          Length = 1883

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 17/123 (13%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE----------VKTLERIEIIRDLR 629
           Q+ LRIL+ V T+  A +LT  L +   +  Y+H++          + + ++  IIR  R
Sbjct: 398 QKDLRILVFVETRFGASNLTSMLKKEPFQ-EYLHTKRLVGHNGVDGMDSEKQQSIIRKFR 456

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVIL 688
            GK  ++V  N+L EG+D+ +C +V   D      + S  SLIQ  GRA ++N +  +I+
Sbjct: 457 DGKCRLIVTTNVLEEGIDVQDCNIVICYDG-----ILSLKSLIQRRGRARSKNESKFIII 511

Query: 689 YAD 691
           Y D
Sbjct: 512 YND 514


>gi|326441399|ref|ZP_08216133.1| transcription-repair coupling factor [Streptomyces clavuligerus
           ATCC 27064]
          Length = 1176

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 101/234 (43%), Gaps = 14/234 (5%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           A+A+ ++      +  + L    + + F +A +     RP + +      A  L +  ++
Sbjct: 15  ALAEAVEAARGGTRTHVDLVGPPAARPFAVAALAREAGRPVLAVTATGREAEDLAAALRS 74

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
             P   V  + ++ +    E   PR+DT   + + +     R+ H A          +VV
Sbjct: 75  LLPEEGVAEYPAW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPAADDPAAGPVSVVV 129

Query: 276 SSVSCIYGIGSVESYSQMI-VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           + +  +     V+   +++ V L+ G   +  E++ +L    Y R ++   RG F V G 
Sbjct: 130 APIRSVLQP-QVKGLGELVPVALRTGQQADLDEVVDALAAAAYSRVELVEKRGEFAVRGG 188

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
            +++FP   E+   RV  +G+DIEEI  F      KI +  ++++  +  +  P
Sbjct: 189 ILDVFPP-TEEHPLRVEFWGDDIEEIRYF------KIADQRSLEVAEHGLWAPP 235


>gi|195403478|ref|XP_002060316.1| GJ16043 [Drosophila virilis]
 gi|194140655|gb|EDW57129.1| GJ16043 [Drosophila virilis]
          Length = 605

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 9/111 (8%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD+   AA  G +I++ V TK+  + L  ++    + V  +H +   ++R  ++ D R 
Sbjct: 363 IYDQ---AAMPG-KIIIFVATKKKVDKLARFINALGVSVGSIHGDKSQMDRDNVLNDFRS 418

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           G+ ++LV  ++   GLDI   G+  +++ D   F +S    I  IGR  RN
Sbjct: 419 GRANILVATDVAARGLDID--GIKYVINFD---FPQSSEDYIHRIGRTGRN 464


>gi|242371667|ref|ZP_04817241.1| transcription-repair coupling factor [Staphylococcus epidermidis
           M23864:W1]
 gi|242350616|gb|EES42217.1| transcription-repair coupling factor [Staphylococcus epidermidis
           M23864:W1]
          Length = 1169

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 21/194 (10%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + LK+G+ ++    L+ LV   Y+R+ +    G F + G  I+I+P  L   
Sbjct: 131 VEMWQSHQMTLKVGEDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGT 188

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +++ I +F   T +   N+E ++I   S Y+     +     ++KE  +  
Sbjct: 189 PVRIELFDTEVDSIRDFDVETQRSNENIEEVEITTASDYIITDEVIQHLQTHLKEAYEHT 248

Query: 407 LIELEKEGR-----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             ++EK  R       E+ +L +   +D ++L    +                 E P T+
Sbjct: 249 RPKIEKSVRNDLKETYESFKLFESTFFDHQLLRRLVAFMY--------------EQPSTI 294

Query: 462 FEYIPEDSLLFVDE 475
            +Y  +D+++ VDE
Sbjct: 295 IDYFRDDAIIAVDE 308


>gi|269798420|ref|YP_003312320.1| transcription-repair coupling factor [Veillonella parvula DSM 2008]
 gi|269095049|gb|ACZ25040.1| transcription-repair coupling factor [Veillonella parvula DSM 2008]
          Length = 1098

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 109/249 (43%), Gaps = 42/249 (16%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           R+   ++ G++GS K+F +++   A + +P +++  +K        +   F P+  V  F
Sbjct: 24  RKGKSVIYGLSGSQKSFLLSQSFSAGLTKPVVIVVHDKDHKEMWERDLAFFMPNAPVLSF 83

Query: 226 VSYYDYYQPEAYVPRTD--TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
                        P TD   +     S+  Q  +MR  A   LL   +  VV        
Sbjct: 84  -------------PTTDHVDFTTVARSLEVQGAQMRALA---LLAWQEPAVV-------- 119

Query: 284 IGSVESYSQMIV----------QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           I + E  +Q +V             + D++E+   L  LV   Y+R D    RG F V G
Sbjct: 120 IANAEEVTQYVVSPHYLKGQSLHFALNDAIERDVALEQLVTIGYERVDQVEQRGHFAVRG 179

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D ++I+P +  D   R+  FG++I+ +  F+ +  Q  R++E I+ Y  + +   +   +
Sbjct: 180 DILDIYPVN-SDHPIRIEFFGDEIDTL-RFFSVENQ--RSIEQIESYTVTPFFLGKSDAD 235

Query: 394 -TAMKYIKE 401
            T + Y+KE
Sbjct: 236 STLLSYVKE 244



 Score = 40.8 bits (94), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 31/59 (52%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            +R    H ++   +  EI+ D   G +DVL+  +++  GLDIP    + I DAD+ G 
Sbjct: 783 GLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGL 841


>gi|47028621|gb|AAT09162.1| DEAD box protein AxVH [Ambystoma mexicanum]
          Length = 724

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 581 QGL---RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           QGL   R ++ V TK+MA+ LT  L + NI    +H +    ER E + D R GK  VLV
Sbjct: 541 QGLGKERTMVFVGTKKMADYLTTLLCQENISATSIHGDRLQREREEALADFRFGKCHVLV 600

Query: 638 GINLLREGLDI 648
             N+   GLDI
Sbjct: 601 ATNVAARGLDI 611


>gi|116629091|ref|YP_814263.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238853834|ref|ZP_04644199.1| dead/deah box helicase domain protein [Lactobacillus gasseri 202-4]
 gi|116094673|gb|ABJ59825.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC
           33323]
 gi|238833529|gb|EEQ25801.1| dead/deah box helicase domain protein [Lactobacillus gasseri 202-4]
          Length = 464

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++LT YL E+ ++V  +H  +   ER  IIR +R G++  +V  +L   G+D+P 
Sbjct: 259 TKKTVDELTNYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPG 318

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +  K+        +I  IGR  RN
Sbjct: 319 VSLVVNYEIPKD-----LEFVIHRIGRTGRN 344


>gi|311111123|ref|ZP_07712520.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
 gi|311066277|gb|EFQ46617.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
          Length = 461

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++LT YL E+ ++V  +H  +   ER  IIR +R G++  +V  +L   G+D+P 
Sbjct: 256 TKKTVDELTNYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPG 315

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +  K+        +I  IGR  RN
Sbjct: 316 VSLVVNYEIPKD-----LEFVIHRIGRTGRN 341


>gi|145593442|ref|YP_001157739.1| transcription-repair coupling factor [Salinispora tropica CNB-440]
 gi|145302779|gb|ABP53361.1| transcription-repair coupling factor [Salinispora tropica CNB-440]
          Length = 1216

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 23/195 (11%)

Query: 181 KTFTMAKV-----IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + F +A V     +    RP + +      A  L     +  P + V  F S+ +    E
Sbjct: 41  RPFAVAAVAADEPVGGAGRPVLAVTATSREAEDLAVALGSLIPADQVAVFPSW-ETLPHE 99

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC--IVVSSVSCIY-----GIGSVE 288
              PR+DT   + + +     R+ H        R+    +VV+ V  +      G+G +E
Sbjct: 100 RLSPRSDTVGRRLAVLR----RLAHPEATDAQGRSGPLRVVVAPVRSLLQPQLKGLGELE 155

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                 V+L  GD  + +++   L    Y R D+   RG F V G  +++FP   E  + 
Sbjct: 156 P-----VRLSAGDEADLEDVARRLTDMAYARVDLVTKRGEFAVRGGILDVFPPTDEHPS- 209

Query: 349 RVSMFGNDIEEISEF 363
           RV  +G+++EEI  F
Sbjct: 210 RVEFWGDEVEEIRTF 224


>gi|300172731|ref|YP_003771896.1| transcription-repair coupling factor [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887109|emb|CBL91077.1| transcription-repair coupling factor [Leuconostoc gasicomitatum LMG
           18811]
          Length = 1172

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 132/317 (41%), Gaps = 48/317 (15%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QLLLGV GS +  ++A + EA  R  +V+   ++ A QL+SE  +           S ++
Sbjct: 25  QLLLGVNGSARAASVAALYEANPRQMLVVTDTQVHADQLFSELSSLM--------TSVFN 76

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV--- 287
           +   E+        +  E +I+    R++  A+   L + +  V+  V+ + G+  +   
Sbjct: 77  FPAEES--------LATEIAISSPDLRLQRVASLLALRKGEAKVI--VTSLAGVERLLPR 126

Query: 288 -ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            E+     + L +G + +  ++  +L+   Y    +    G F   G  I+I+P    D 
Sbjct: 127 PETVDAAKLSLTVGQTYQLNDIKKTLMMMGYTPTKLVQGAGEFAQRGSIIDIYPL-TSDE 185

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNV--------ETIKIYANSHYVTPRPTLNTAMKY 398
             R+  F ++++++  F  ++ QK   V         T  I + + Y   + T+ TA   
Sbjct: 186 PIRLDFFDDELDQLKNF-DVSTQKSTTVLKKYHVQPATDFIVSETQYDIAKQTIETAFNN 244

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
            ++EL     +   EG                 +L   G    +  Y+ +      GE  
Sbjct: 245 YRKELTGVAKKHATEG-----------FAATQHVLNEHGRVNQLLPYATHFFD---GET- 289

Query: 459 PTLFEYIPEDSLLFVDE 475
            TL +Y  +D L+FVDE
Sbjct: 290 -TLLDYFSDDVLVFVDE 305



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H ++   +   ++ D   G +DVLV   ++  G+DIP    + + +AD  G L  
Sbjct: 854 RVGAIHGQMSETQLESVLYDFLNGNYDVLVTTTIIETGVDIPNANTLIVENADHMG-LSQ 912

Query: 668 KTSLIQTIGRAAR 680
              L   +GR+AR
Sbjct: 913 LYQLRGRVGRSAR 925


>gi|255713704|ref|XP_002553134.1| KLTH0D09746p [Lachancea thermotolerans]
 gi|238934514|emb|CAR22696.1| KLTH0D09746p [Lachancea thermotolerans]
          Length = 621

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           LAA      L+ V TKRMA+ LT++L  +N+R   +H +    ER   +   R GK  +L
Sbjct: 401 LAASDDGLTLIFVETKRMADALTDFLIMQNLRATAIHGDRSQSERERALAAFRSGKASLL 460

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D   +         +  IGR  R  N+ V
Sbjct: 461 VATAVAARGLDIPNVTHVINYDLPND-----IDDYVHRIGRTGRAGNTGV 505


>gi|146329248|ref|YP_001209905.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
 gi|146232718|gb|ABQ13696.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
          Length = 442

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 5/124 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           LA +   + ++   TK   E +  +LYE   + +++H +++  +R  II   R G+ +VL
Sbjct: 238 LADEAVTQCIVFTATKSTTETVAHHLYENGFQAQFLHGDLQQQKRNRIIERFRNGQINVL 297

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D       R     +  IGR+ R   S V L   ++T  
Sbjct: 298 VATDIAARGIDIPAISHVINYD-----LPRQSEDYVHRIGRSGRAGRSGVALNLVSLTDR 352

Query: 697 IQLA 700
             +A
Sbjct: 353 AAMA 356


>gi|159036485|ref|YP_001535738.1| transcription-repair coupling factor [Salinispora arenicola
           CNS-205]
 gi|157915320|gb|ABV96747.1| transcription-repair coupling factor [Salinispora arenicola
           CNS-205]
          Length = 1218

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 23/195 (11%)

Query: 181 KTFTMAKV-----IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + F +A +     +    RP + +      A  L +      P + V  F S+ +    E
Sbjct: 41  RPFAVAAIAADEPVGGAGRPVLAVTATTREADDLAAALGCLIPADQVAVFPSW-ETLPHE 99

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC--IVVSSVSCIY-----GIGSVE 288
              PR+DT   + + +     R+ H        R+    ++V+ V  +      G+G +E
Sbjct: 100 RLSPRSDTVGRRLAVLR----RLAHPDAADSQGRHGPLRVIVAPVRSLLQPQLKGLGELE 155

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                 V+L  GD  + ++L   L    Y R D+   RG F V G  +++FP   E  A 
Sbjct: 156 P-----VRLAAGDEADLEDLARRLTDLAYARVDLVTKRGEFAVRGGILDVFPPTDEHPA- 209

Query: 349 RVSMFGNDIEEISEF 363
           RV  +G+++EEI  F
Sbjct: 210 RVEFWGDEVEEIRTF 224


>gi|282852128|ref|ZP_06261485.1| DEAD/DEAH box helicase [Lactobacillus gasseri 224-1]
 gi|282556692|gb|EFB62297.1| DEAD/DEAH box helicase [Lactobacillus gasseri 224-1]
          Length = 415

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++LT YL E+ ++V  +H  +   ER  IIR +R G++  +V  +L   G+D+P 
Sbjct: 259 TKKTVDELTNYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPG 318

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +  K+        +I  IGR  RN
Sbjct: 319 VSLVVNYEIPKD-----LEFVIHRIGRTGRN 344


>gi|196003500|ref|XP_002111617.1| hypothetical protein TRIADDRAFT_55837 [Trichoplax adhaerens]
 gi|190585516|gb|EDV25584.1| hypothetical protein TRIADDRAFT_55837 [Trichoplax adhaerens]
          Length = 651

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 5/114 (4%)

Query: 576 NLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           N+  ++G+ R ++ V TK  A DL + +    + V+ +HS++   +R EII   R+GK  
Sbjct: 318 NIIEEEGIQRSVVFVTTKVEANDLAQKINGFGLPVKPLHSDLSQNKREEIIEAFRVGKLK 377

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            +V  ++   GLDIPE  LV  +     GF       +   GR  R   S V +
Sbjct: 378 AIVATDVAARGLDIPETDLVIQVAPPPNGF----DFYVHRTGRTGRAGRSGVAV 427


>gi|61657377|emb|CAI44294.1| primosomal protein N [Thermotoga naphthophila RKU-10]
          Length = 748

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 15/118 (12%)

Query: 591 TKRMAEDLTEYLYERNI-RV-RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           T+++  +L  Y   R I RV R +   V  LE    I  L  G  D+LVG  L+ +GL +
Sbjct: 518 TEKVERELKRYFPARRIARVDREVIDNVMELE--SYIDKLIRGDIDILVGTRLITKGLSV 575

Query: 649 PECGLVAILDADKEGF-------LRSKTSLIQTIGRAARNVNSKVILYA----DTITK 695
           PE GLV I+D D   F       LR+   ++Q +GRA+R    K I+      DTI K
Sbjct: 576 PEIGLVCIMDVDSLIFNPDYSSSLRTFQLIVQALGRASRGDQGKAIIQTYNSEDTIIK 633


>gi|284048953|ref|YP_003399292.1| transcription-repair coupling factor [Acidaminococcus fermentans
           DSM 20731]
 gi|283953174|gb|ADB47977.1| transcription-repair coupling factor [Acidaminococcus fermentans
           DSM 20731]
          Length = 1092

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 17/210 (8%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQ--RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L G+TGS K   +  + E +Q  +P +++  N+        E  +F+P  A+       +
Sbjct: 31  LTGLTGSVKAGFLCALQETVQAAQPLVILTVNRESIRAQRRELAHFYPDLAMR------E 84

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVES 289
            Y       + DT        NEQ+   R +A   ++ +   I+ ++  + I  +   ES
Sbjct: 85  LYPASLIHGQVDTR-------NEQVMAERAAALEMIVRKEPGIIFATAEAAIQKLPQPES 137

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
             +  ++L +G  +EQ  ++  LVK  Y+R +     G   V GD +++FP + +D + R
Sbjct: 138 LVRENLKLAVGQEIEQSLVVEKLVKAGYERTEQVDTLGQVAVRGDILDVFPINGKD-SVR 196

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           +  F N I+ +  F   T + I  +  + I
Sbjct: 197 IEWFDNTIDAMKRFDLDTQRSIGTISQVGI 226


>gi|227510665|ref|ZP_03940714.1| ATP-dependent DNA helicase/translocase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190317|gb|EEI70384.1| ATP-dependent DNA helicase/translocase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 442

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 11/146 (7%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + +   IN   +Q  R LL V   R    ++  L + NI   Y+       +R+E +  +
Sbjct: 296 KSILQMINRLVKQKQRFLLFVPRIRDLTLVSSALEKANINCTYLTVYSADPQRLEKVTAM 355

Query: 629 RLGKFDVLVGINLLREGLDIPECGL-VAILDADKEGFLRSKTSLIQTIGRAARNV---NS 684
           R    D L+   +L  G+  P  G+ V +L AD E F  S ++L+Q  GR  RN      
Sbjct: 356 RSQAVDFLITTTILERGVTFP--GIDVMVLKADDEVF--SASALVQIAGRVGRNSARPTG 411

Query: 685 KVILYADTITKSIQLA---IDETTRR 707
           +VILY +T +K+I+     I E  RR
Sbjct: 412 QVILYCETKSKTIKSCDRQIKEMNRR 437


>gi|325693569|gb|EGD35488.1| DNA helicase RecG [Streptococcus sanguinis SK150]
          Length = 671

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+LT Y + +  +V  +H ++K+ E+  I++D + G+ D+LV   ++  G+++P   +
Sbjct: 484 LEEELTAY-FGQQAKVALLHGKMKSEEKEAIMQDFKEGQTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R    S  +L A+  T+S
Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582


>gi|184201352|ref|YP_001855559.1| transcription-repair coupling factor [Kocuria rhizophila DC2201]
 gi|183581582|dbj|BAG30053.1| transcription-repair coupling factor [Kocuria rhizophila DC2201]
          Length = 1254

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 25/166 (15%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI--------NEQIDR 257
           A +L +   ++ P   +  F S+ +    E   PR+DT  ++ S +        +EQ  R
Sbjct: 88  AEELQAALGSYLPSEQIANFPSW-ETLPHERLSPRSDTVGQRLSVLRRLERTDPSEQPLR 146

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +  +  RS+L+            + G+G +E      V L+ G   + ++L+  L    Y
Sbjct: 147 VVVAPVRSVLQ----------PVVAGLGQMEP-----VTLRTGQDYDFQQLVVELAGAAY 191

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            R D+   RG F V G  I++FP   ED   R   FG++++E+  F
Sbjct: 192 SRVDMVTRRGEFAVRGGIIDVFPP-TEDHPVRAEFFGDELDEMRWF 236


>gi|162329381|ref|YP_001604182.1| putative helicase [Acidianus filamentous virus 6]
 gi|157310758|emb|CAJ31578.1| putative helicase [Acidianus filamentous virus 6]
          Length = 564

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 589 VLTKRM--AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           V+ +R+  A+ L+E L E  I   ++ S  K  ER+  I +L+ GK   L+  +L  EGL
Sbjct: 433 VIVRRISTAKKLSEMLNENGISSDFVTSMTKLEERMRKIENLKNGKIQTLIATSLADEGL 492

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           DIP   L+ +L   K     S+  L+Q +GR  R    K
Sbjct: 493 DIPNLRLIVLLSQGK-----SRIKLVQRVGRVMRPAKDK 526


>gi|327458866|gb|EGF05214.1| DNA helicase RecG [Streptococcus sanguinis SK1057]
          Length = 671

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+LT Y + +  +V  +H ++K+ E+  I++D + G+ D+LV   ++  G+++P   +
Sbjct: 484 LEEELTAY-FGQQAKVALLHGKMKSEEKEAIMQDFKEGQTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R    S  +L A+  T+S
Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582


>gi|289432962|ref|YP_003462835.1| transcription-repair coupling factor [Dehalococcoides sp. GT]
 gi|288946682|gb|ADC74379.1| transcription-repair coupling factor [Dehalococcoides sp. GT]
          Length = 1148

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 132/309 (42%), Gaps = 41/309 (13%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           + V  +G+ F++A V   ++ P +V+      A +L  +             ++ Y   +
Sbjct: 30  ISVLDAGRGFSLAAVYRKLKCPMLVITSQPERARELLEQ-------------IAAYSGEE 76

Query: 234 PEAYVPRTDT--YIEKESSINEQIDRMRHSAT-RSLLERNDC-IVVSSVSCI---YGIGS 286
           P  ++P      Y    S  N  +++MR +      +   D  I+V++V  +   Y    
Sbjct: 77  P-GFLPDPSLLPYQRAVSDRNSSLEKMRLAGILGGFIRSGDARIIVTAVPALLQRYIFPK 135

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           V  + Q  VQ+  G   E + L+    +  Y+++ I  + GT+   G  ++IFP H ED 
Sbjct: 136 V--FEQSFVQVWTGLETEPQNLICHFQQLGYRQESIVEMPGTYSHRGGILDIFP-HTEDN 192

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FGN +E +  F P + +  + V       N   ++P   +    +  ++ELK +
Sbjct: 193 PVRLEFFGNTLESLRNFDPQSQRSGKQV-------NELTISPASEIFHLGQLPRQELKNK 245

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  L  +    E  R    ++ D+  L+     +  E ++       P     ++ +Y+P
Sbjct: 246 LDALLTDNLNPEFSR---TLSADINHLQEGLKPEYPEFFA-------PLFNTSSILDYLP 295

Query: 467 EDSLLFVDE 475
            D+L+ +DE
Sbjct: 296 ADALVVLDE 304


>gi|330822482|ref|XP_003291680.1| hypothetical protein DICPUDRAFT_156303 [Dictyostelium purpureum]
 gi|325078116|gb|EGC31785.1| hypothetical protein DICPUDRAFT_156303 [Dictyostelium purpureum]
          Length = 397

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + LTE + E N  V  MH ++   ER EII+  R
Sbjct: 255 DIYDSLTIT-----QAVIFCNTKKKVDQLTEKMREANFTVASMHGDMVQKEREEIIKSFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++L  G+D+ +  LV   D   D+E +L         IGR+ R
Sbjct: 310 SGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYLHR-------IGRSGR 355


>gi|313892911|ref|ZP_07826488.1| transcription-repair coupling factor [Veillonella sp. oral taxon
           158 str. F0412]
 gi|313442264|gb|EFR60679.1| transcription-repair coupling factor [Veillonella sp. oral taxon
           158 str. F0412]
          Length = 1055

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 116/267 (43%), Gaps = 46/267 (17%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIE-AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           R+   ++ G++GS K+F + +     + +P +++  +K        +   F P+  V  F
Sbjct: 24  RKGKSVIYGLSGSQKSFLLNQAFTTGLTKPVVIVVHDKDHKEMWERDLAFFMPNVPVLSF 83

Query: 226 VSYYDYYQPEAYVPRTD--TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
                        P TD   +     S+ +Q  +MR  A   LL   +  VV        
Sbjct: 84  -------------PITDHVDFTTVARSLEDQGAQMRALA---LLAWQEPAVV-------- 119

Query: 284 IGSVESYSQMIV----------QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           I + E  +Q +V             + D++E+   L  LV   Y+R D    RG F V G
Sbjct: 120 IANAEEVTQYVVSPQYLKGQSLHFALNDTIERDTALEQLVTIGYERVDQVEQRGHFAVRG 179

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D ++I+P +  D   R+  FG++I+ +  F+ +  Q  R++E I  Y  + +   +   +
Sbjct: 180 DILDIYPVN-SDNPIRIEFFGDEIDTL-RFFAVGNQ--RSIEQIDSYTVTPFFLGKSDAD 235

Query: 394 -TAMKYIKEELKMRLIELEKEGRLLEA 419
            T + Y+K+ L +     ++ GR+ EA
Sbjct: 236 STLLSYVKDGLLI----YDEPGRIQEA 258



 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           ++R    H ++   +  EI+ D   G +DVL+  +++  GLDIP    + I DAD+ G 
Sbjct: 783 DLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGL 841


>gi|281412237|ref|YP_003346316.1| primosomal protein N' [Thermotoga naphthophila RKU-10]
 gi|281373340|gb|ADA66902.1| primosomal protein N' [Thermotoga naphthophila RKU-10]
          Length = 736

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 15/118 (12%)

Query: 591 TKRMAEDLTEYLYERNI-RV-RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           T+++  +L  Y   R I RV R +   V  LE    I  L  G  D+LVG  L+ +GL +
Sbjct: 506 TEKVERELKRYFPARRIARVDREVIDNVMELE--SYIDKLIRGDIDILVGTRLITKGLSV 563

Query: 649 PECGLVAILDADKEGF-------LRSKTSLIQTIGRAARNVNSKVILYA----DTITK 695
           PE GLV I+D D   F       LR+   ++Q +GRA+R    K I+      DTI K
Sbjct: 564 PEIGLVCIMDVDSLIFNPDYSSSLRTFQLIVQALGRASRGDQGKAIIQTYNSEDTIIK 621


>gi|332363900|gb|EGJ41679.1| DNA helicase RecG [Streptococcus sanguinis SK355]
          Length = 671

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+LT Y + +  +V  +H ++K+ E+  I++D + G+ D+LV   ++  G+++P   +
Sbjct: 484 LEEELTAY-FGQQAQVALLHGKMKSEEKDAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R    S  +L A+  T+S
Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582


>gi|269218549|ref|ZP_06162403.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211660|gb|EEZ78000.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 767

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           LA  +    L+ V T+  AEDLT  L  R +    +  +V   ER +++  LR G  DVL
Sbjct: 361 LAVTEAQAALVFVRTRSTAEDLTIELGARGVATAALSGDVVQKEREKLVARLRDGTLDVL 420

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLD+   GLV   D  +E       + +  IGR  R
Sbjct: 421 VATDVAARGLDVDRIGLVVNFDVPRE-----TDTYVHRIGRTGR 459


>gi|152986338|ref|YP_001347232.1| putative ATP-dependent DNA helicase [Pseudomonas aeruginosa PA7]
 gi|150961496|gb|ABR83521.1| probable ATP-dependent DNA helicase [Pseudomonas aeruginosa PA7]
          Length = 1448

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 9/132 (6%)

Query: 557 PPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612
           PPV + +  +    E VYD +   A +    L+ V T+RMAE +T +L ER  + RV   
Sbjct: 262 PPVALEAVMSNDAWELVYDRLACLAGEHRTTLVFVNTRRMAERVTRFLAERLGSQRVAAH 321

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R++  + L+ G+  VLV    L  G+DI +  LV  L +      RS  + +
Sbjct: 322 HGSLAKELRLDAEQRLKAGQLKVLVATASLELGIDIGDVELVCQLSSP-----RSIAAFL 376

Query: 673 QTIGRAARNVNS 684
           Q +GR+  +V  
Sbjct: 377 QRVGRSGHSVGG 388


>gi|113954991|ref|YP_730883.1| transcription-repair coupling factor [Synechococcus sp. CC9311]
 gi|113882342|gb|ABI47300.1| transcription-repair coupling factor [Synechococcus sp. CC9311]
          Length = 1180

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 141/311 (45%), Gaps = 41/311 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           R++  L+ G   + +    + +   M +P +V+ P    A +  +  +      A  Y  
Sbjct: 25  RDQRLLMRGAGRAARALVASALARRMDQPLLVVVPTLEEAGRWTALLELMGWSRAQLYPT 84

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINE-QIDRMRHSATRSLLERNDCIVVSSVSCIYG-I 284
           S    Y+P  +   T+    +   ++E Q DR           ++D  +V++  C+   +
Sbjct: 85  SEGSPYEP--FDSTTEITWGQLQVLSELQTDR----------SKSDLAIVATERCLQPHL 132

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
              ++ ++    LK GD V+ +EL + L +  Y+R       GT+   GD ++++P   E
Sbjct: 133 PPPQTLAEHCRALKKGDLVDLEELSTYLSQLGYERVSTIDQEGTWSRRGDIVDVYPVSSE 192

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            +  R+  FGN+++++ EF P + + +  V+T+K+       TP        + ++E++ 
Sbjct: 193 -LPVRLEFFGNELDKLREFDPASQRSLDAVDTLKL-------TPTGFSPLIAEGLREQVP 244

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
             L +L     L EAQ     IT   E+LE  G+ + +    R L G    + P +L +Y
Sbjct: 245 DDLDQL-----LSEAQ-----IT---ELLEG-GTPEGM----RRLMGLA-WDAPASLLDY 285

Query: 465 IPEDSLLFVDE 475
           +P +  + +DE
Sbjct: 286 LPAECCIAIDE 296


>gi|227432633|ref|ZP_03914609.1| transcription-repair coupling factor [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351603|gb|EEJ41853.1| transcription-repair coupling factor [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 1179

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 129/309 (41%), Gaps = 31/309 (10%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QLLLGV G+ +  ++A +     RP ++++  ++ A Q + +  +      +E  V  Y+
Sbjct: 26  QLLLGVNGTARAASIAALYRKNPRPMLIISDTQVHADQFFDDLSSL-----LEDLV--YN 78

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG----IGS 286
           +   E+        I  E +I+    R++   T   L+    I+V  V+ + G    +  
Sbjct: 79  FPAEES--------IATEMAISSSELRLQRVQTLLALKTEKPIIV--VTSLAGAERLVPK 128

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            +S  Q  + +K+GD+     + ++L+   Y    +  I G F   G  ++++P   +D 
Sbjct: 129 KQSLEQAHLHVKVGDAYNLNVIKNTLMMMGYTPTKLVQIPGEFAHRGSIVDVYPITFDD- 187

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  F N+++++  F   T +   + + I I   + ++      + A   I+      
Sbjct: 188 PIRLDFFDNELDQLKSFDVATQKSTTSFDEINIDPATDFIVSEHQYDQAKLAIETAFSDY 247

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
            I L      ++ +           ML       ++  Y+ +       +   TL +Y P
Sbjct: 248 RINLSG----VDKKHATDGFAPTQYMLNERERGSALVPYAPFFF-----DGQTTLLDYFP 298

Query: 467 EDSLLFVDE 475
            DSL+ +DE
Sbjct: 299 TDSLIIIDE 307



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 30/115 (26%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERI--------------------------EIIR 626
           ++  D  E    RN +V Y+H+ V  L+RI                           I+ 
Sbjct: 815 KIVRDAIEKEIARNGQVFYLHNRVADLDRIVSQIEELIPSARVAAIHGQMSETQLESILY 874

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           D   G++DVLV   ++  G+DIP    + + +AD  G       L Q  GR  R+
Sbjct: 875 DFLNGQYDVLVTTTIIETGVDIPNANTLIVENADHMGL----AQLYQLRGRVGRS 925


>gi|327489060|gb|EGF20855.1| DNA helicase RecG [Streptococcus sanguinis SK1058]
          Length = 671

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+LT Y + +  +V  +H ++K+ E+  I++D + G+ D+LV   ++  G+++P   +
Sbjct: 484 LEEELTAY-FGQQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R    S  +L A+  T+S
Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582


>gi|294951949|ref|XP_002787179.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239901883|gb|EER18975.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 479

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 3/145 (2%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+ S   + +  +D +     +G RI++   TK+ A+ LT  +   N     +H + + 
Sbjct: 293 VEVVSEMDKRQMFFDWLKETYPKGSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQ 352

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER  I+ D + G+ +VLV  ++ + GLDI     V   D  K   +      I   GRA
Sbjct: 353 RERDRILNDFKTGRCNVLVATDVAQRGLDIKNVEWVVNYDMPKT--VEDYVHRIGRTGRA 410

Query: 679 ARNVNSKVILYADTITKS-IQLAID 702
               NS   +  DT T   +++A D
Sbjct: 411 GAVGNSLTFITNDTHTPDRVRMAKD 435


>gi|39995128|ref|NP_951079.1| transcription-repair coupling factor [Geobacter sulfurreducens PCA]
 gi|39981890|gb|AAR33352.1| transcription-repair coupling factor [Geobacter sulfurreducens PCA]
 gi|298504158|gb|ADI82881.1| transcription-repair coupling factor [Geobacter sulfurreducens
           KN400]
          Length = 1157

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 32/205 (15%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G+ GS   + +A++I     P +V+ P+   AA+L +E + FF     +  +      
Sbjct: 25  LAGLRGSSPAYLLARLIGEAGAPFLVVVPDAEAAAELTTELR-FFTGRPGDILL------ 77

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
                 P  DT   +++S +  +   R +  R L +R    VV++          E+  Q
Sbjct: 78  -----FPAWDTSPFEKASPHADVTAQRLAVLRRLADRRAAAVVTTP---------EALRQ 123

Query: 293 MIVQLKIGDSV----------EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +V   + DS           ++ +LLS LV   Y    +   RGTF V G  ++IFP  
Sbjct: 124 RVVPRSLLDSASLYFLPGEESDRDDLLSRLVTLGYLNVPLVEDRGTFAVRGGIVDIFPPG 183

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLT 367
             D+  R+  FG+ ++ I  F PL+
Sbjct: 184 F-DLPVRIEFFGDFVDTIRSFEPLS 207


>gi|327461775|gb|EGF08106.1| DNA helicase RecG [Streptococcus sanguinis SK1]
          Length = 671

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+LT Y + +  +V  +H ++K+ E+  I++D + G+ D+LV   ++  G+++P   +
Sbjct: 484 LEEELTAY-FGQQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R    S  +L A+  T+S
Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582


>gi|319945976|ref|ZP_08020225.1| transcription-repair coupling factor [Streptococcus australis ATCC
           700641]
 gi|319747784|gb|EFW00029.1| transcription-repair coupling factor [Streptococcus australis ATCC
           700641]
          Length = 1170

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 76/358 (21%), Positives = 149/358 (41%), Gaps = 60/358 (16%)

Query: 271 DCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           + IV+++VS     + + ++ S MI    +G+     EL  +L+   Y++      +G F
Sbjct: 117 EGIVIANVSGSRLLLPNPKTVSSMIQSFSVGEEKNLTELKDTLLAMGYQKVSQVSQQGEF 176

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
            + GD +++F +  +D  +R+  FG++I+ I  F P T + ++N++TI ++  S  +  +
Sbjct: 177 SLRGDIVDLFEAS-QDFPYRMEFFGDEIDGIRTFSPETQRSLKNLDTITVHPVSDMLLTK 235

Query: 390 PTLNTAMKYIKE--------ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
                  K +++        E K  L E+     L EA    QR+  D     +    Q+
Sbjct: 236 DDFLRGQKNLEKLIQKSPNPEFKSYLTEV-----LTEAHH--QRLHADSRKFLSLFYQQT 288

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRK 494
                             TLF+Y+P+ + +F+D+ +  + Q       ++ +   D  + 
Sbjct: 289 Y-----------------TLFDYLPKHAPVFLDDYYKIMDQETRFDVEVANLLTEDLQKS 331

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            + AE  +      DN  L        +P +   +   G   L         Q       
Sbjct: 332 RSFAEAQY----FADNSAL----LRTYKPASYFSNFQKGLGNLRFDALYSFNQY------ 377

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
             P  E  S  T ++   DEI+   +Q   ++L V +K+  + L E+L +  I + Y+
Sbjct: 378 --PMQEFFSQFTLLK---DEIDRFRKQDYTVILQVTSKQGFQQLQEHLRDYGIDLDYL 430


>gi|125717410|ref|YP_001034543.1| ATP-dependent DNA helicase RecG [Streptococcus sanguinis SK36]
 gi|125497327|gb|ABN43993.1| ATP-dependent DNA helicase recG, transcription-repair coupling
           factor, putative [Streptococcus sanguinis SK36]
          Length = 671

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+LT Y + +  +V  +H ++K+ E+  I++D + G+ D+LV   ++  G+++P   +
Sbjct: 484 LEEELTAY-FGQQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R    S  +L A+  T+S
Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582


>gi|324993503|gb|EGC25423.1| DNA helicase RecG [Streptococcus sanguinis SK405]
          Length = 671

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+LT Y + +  +V  +H ++K+ E+  I++D + G+ D+LV   ++  G+++P   +
Sbjct: 484 LEEELTAY-FGQQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R    S  +L A+  T+S
Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582


>gi|82569452|gb|ABB83368.1| VASA-like protein [Pleurodeles waltl]
          Length = 463

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 9/116 (7%)

Query: 581 QGL---RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           QGL   R ++ V TK+ A+ LT  L + N+    +H +    ER E + D R GK +VLV
Sbjct: 277 QGLGIERTMVFVKTKKRADYLTTLLCQENVLATSIHGDRLQKEREEALADFRFGKCNVLV 336

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADT 692
             N+   GLDI     V I D        +    +  IGR  R  N  K I + DT
Sbjct: 337 ATNVAARGLDIENVQHVIIYDLSD-----NIEEYVHRIGRTGRCGNVGKAITFFDT 387


>gi|71065641|ref|YP_264368.1| ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter arcticus
           273-4]
 gi|71038626|gb|AAZ18934.1| possible ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter
           arcticus 273-4]
          Length = 567

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I++   TKR  E L + L E   +  ++H ++   +R  I++DLR GK  +LV  ++  
Sbjct: 286 QIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCKILVATDVAA 345

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            GLD+P   L  +++ D     R     +  IGR  R   + V +
Sbjct: 346 RGLDVPA--LSHVINYD---LPRQTEDYVHRIGRCGRAGRTGVAI 385


>gi|332365660|gb|EGJ43418.1| DNA helicase RecG [Streptococcus sanguinis SK1059]
          Length = 671

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+LT Y + +  +V  +H ++K+ E+  I++D + G+ D+LV   ++  G+++P   +
Sbjct: 484 LEEELTAY-FGQQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R    S  +L A+  T+S
Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582


>gi|85708238|ref|ZP_01039304.1| possible helicase [Erythrobacter sp. NAP1]
 gi|85689772|gb|EAQ29775.1| possible helicase [Erythrobacter sp. NAP1]
          Length = 1031

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 14/115 (12%)

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           R+++    K  AE+L +   E   N R+  +HS   T  R  II D++ G +D++V +++
Sbjct: 310 RMMVRASGKNEAEELFKLYSEWFPNERIVLVHS--GTTNRKSIISDIKAGMYDIIVCVDM 367

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-----SKVILYAD 691
           L+EG D P+  + A+    K     S + L+Q IGR AR  +     S V+ +AD
Sbjct: 368 LKEGFDFPDLKIAAVHSVHK-----SLSVLLQFIGRFARTQDGLGDASFVVNFAD 417


>gi|14590143|ref|NP_142208.1| hypothetical protein PH0210 [Pyrococcus horikoshii OT3]
 gi|3256596|dbj|BAA29279.1| 444aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 444

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 8/102 (7%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A+QG R+L+ V      E L + L +R I   ++ S+  +  R EI+   + G+  VLV 
Sbjct: 311 AKQGHRVLIDVKRIDHGEILVKMLRDRGINAEFLSSQ--SPNRWEILEKYKKGEIPVLVS 368

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LL+EG+DIPE   + +    K     S    IQTIGRA R
Sbjct: 369 -TLLKEGVDIPEISAIILAGGGK-----SDVMTIQTIGRALR 404


>gi|330465805|ref|YP_004403548.1| transcription-repair coupling factor [Verrucosispora maris
           AB-18-032]
 gi|328808776|gb|AEB42948.1| transcription-repair coupling factor [Verrucosispora maris
           AB-18-032]
          Length = 1232

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 18/177 (10%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RP + +      A  L +   +  P   V  F S+ +    E   PR+DT   + + +  
Sbjct: 77  RPVLAVTATSREAEDLVAALGSLLPAEQVAIFPSW-ETLPHERLSPRSDTVGRRLAVLR- 134

Query: 254 QIDRMRHSATRSLLERNDC--IVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQK 306
              R+ H        R     +VV+ V  +      G+G +E      V+L  GD  + +
Sbjct: 135 ---RLAHPDATDAHGRTGPLRVVVAPVRSLLQPQLKGLGDLEP-----VRLSAGDEADLE 186

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           ++   L    Y R D+   RG F V G  +++FP   E  + RV  +G+++EEI  F
Sbjct: 187 QVARRLTDMAYARVDLVTKRGEFAVRGGILDVFPPTDEHPS-RVEFWGDEVEEIRTF 242


>gi|325690294|gb|EGD32298.1| DNA helicase RecG [Streptococcus sanguinis SK115]
          Length = 671

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+LT Y + +  +V  +H ++K+ E+  I++D + G+ D+LV   ++  G+++P   +
Sbjct: 484 LEEELTAY-FGQQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R    S  +L A+  T+S
Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582


>gi|298693833|gb|ADI97055.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 1168

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   N++ + I   S Y+     +    +++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIKEVDITTASDYIITEEVI----RHLKEELKSA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ +Y
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|325688114|gb|EGD30133.1| DNA helicase RecG [Streptococcus sanguinis SK72]
          Length = 671

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 58/101 (57%), Gaps = 6/101 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +LT Y + +  +V  +H ++K+ E+  I++D + G+ D+LV   ++  G+++P   ++ I
Sbjct: 487 ELTAY-FGQQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATVMVI 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           +DAD+ G     + L Q  GR  R N  S  +L A+  T+S
Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGNKQSYAVLVANPKTES 582


>gi|332360531|gb|EGJ38341.1| DNA helicase RecG [Streptococcus sanguinis SK1056]
          Length = 671

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+LT Y + +  +V  +H ++K+ E+  I++D + G+ D+LV   ++  G+++P   +
Sbjct: 484 LEEELTAY-FGQQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R    S  +L A+  T+S
Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582


>gi|302840989|ref|XP_002952040.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f.
           nagariensis]
 gi|300262626|gb|EFJ46831.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f.
           nagariensis]
          Length = 622

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G RI++   TKRM + L+ Y   R  R   +H + K  ER  +++  + G+  +LV  ++
Sbjct: 370 GTRIIIFCTTKRMCDQLS-YQMSREFRAAAIHGDKKQSERDYVLQAFKDGRTPILVATDV 428

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              GLDIP    V   D     F       I  IGR  R
Sbjct: 429 AARGLDIPNVAAVVNFD-----FPTGTEDYIHRIGRTGR 462


>gi|86146945|ref|ZP_01065263.1| transcription-repair coupling factor [Vibrio sp. MED222]
 gi|85835195|gb|EAQ53335.1| transcription-repair coupling factor [Vibrio sp. MED222]
          Length = 1153

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 23/238 (9%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           LKG   ++ +  L+G   S    T+AK+ E      ++  P+  +A +L SE + F  H 
Sbjct: 12  LKGAGDKKHIGNLVG---SSLALTIAKLAEQHNSHTLLAVPDPQIALKLQSEIEQFTAHE 68

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
                V+ +  ++   Y    D++   +  I+++I R+      +L    D I +  +S 
Sbjct: 69  -----VALFPDWETLPY----DSFSPHQEIISDRIARLY-----ALPTLKDGITIVPIST 114

Query: 281 IYGIGSVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
           +    S   +  Q  + +K GD    ++L   L K  Y+  D     G +   G  +++F
Sbjct: 115 LLQRQSPRDFLLQHTLMVKTGDLYSLEKLRLQLEKSGYRYVDQVFGPGEYASRGSILDLF 174

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           P   +D  +R+  F ++I+ I  F P   + I ++  I++     +    PT  TA++
Sbjct: 175 PMGSKD-PYRIDFFDDEIDTIRTFEPENQRSIEDISEIRLLPAHEF----PTSETAIE 227


>gi|327275873|ref|XP_003222696.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Anolis
           carolinensis]
          Length = 924

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D + G F VLV  ++   
Sbjct: 501 VLLFVTKKANAEELANNLKQEGHSLGLLHGDMDQSERNKVISDFKKGAFPVLVATDVAAR 560

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTHKDSNFAGD 612


>gi|158521716|ref|YP_001529586.1| transcription-repair coupling factor [Desulfococcus oleovorans
           Hxd3]
 gi|158510542|gb|ABW67509.1| transcription-repair coupling factor [Desulfococcus oleovorans
           Hxd3]
          Length = 1174

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 130/304 (42%), Gaps = 41/304 (13%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF-PHNA---VEYFVSYYD 230
           GV      F ++++ + +  P +V+  +    AQ ++E   FF P +A   V  F SY  
Sbjct: 28  GVGKGADAFMVSRIGQTLNVPVLVVTASA-REAQRFTEDARFFQPADARAEVALFPSYTV 86

Query: 231 Y-YQPEAYVPRTDT-YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
             Y+P AY  RT    I+    ++E +      A   L+   D ++  ++      G + 
Sbjct: 87  MPYRPVAYHNRTAAERIQLLYGMSEGL------APAVLVLAVDALLQKTIPP----GDLC 136

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            ++Q + +   G+S++   L   LV   Y R  I    G F + G  +++F S   +   
Sbjct: 137 EFAQTVSE---GESLDPTALAEKLVAGGYTRTAIVEEPGDFSIRGGIVDLF-SPFHEAPA 192

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+ +FG+ +E I  F P+T ++ R    I +      V  +  +   +  +K+    R  
Sbjct: 193 RIDLFGDTVESIHFFSPVTQRRGRPTSGITLLPARETVLAKDRIGRLIAAVKK----RSA 248

Query: 409 ELEKEGRLLEAQRLEQRITYD-LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
           EL           L   ++ D ++ +E     + +E+    +      E P TLF+Y+P 
Sbjct: 249 ELN----------LPVSVSRDIIDRMEQGTDTEGMESLMPLVY-----ETPATLFDYLPG 293

Query: 468 DSLL 471
            +LL
Sbjct: 294 KTLL 297


>gi|93006205|ref|YP_580642.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
 gi|92393883|gb|ABE75158.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
          Length = 552

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I++   TKR  E L + L E   +  ++H ++   +R  I++DLR GK  +LV  ++  
Sbjct: 280 QIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKVKILVATDVAA 339

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLDIP    V   D       R     +  IGR  R
Sbjct: 340 RGLDIPAISHVINYD-----LPRQTEDYVHRIGRCGR 371


>gi|324995182|gb|EGC27094.1| DNA helicase RecG [Streptococcus sanguinis SK678]
 gi|327469130|gb|EGF14602.1| DNA helicase RecG [Streptococcus sanguinis SK330]
 gi|327473512|gb|EGF18932.1| DNA helicase RecG [Streptococcus sanguinis SK408]
          Length = 671

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+LT Y + +  +V  +H ++K+ E+  I++D + G+ D+LV   ++  G+++P   +
Sbjct: 484 LEEELTAY-FGQQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R    S  +L A+  T+S
Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582


>gi|166714773|gb|ABY88099.1| UvrB [Stenotrophomonas sp. ICB91]
          Length = 60

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 35/54 (64%)

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
           I++FP+  +  A R+ +F  ++E+I+ F PLTG+ +RN+    +Y  +HY T R
Sbjct: 2   IDVFPAESDSEALRIELFDGEVEKITMFDPLTGETLRNLMRFTVYPKTHYATTR 55


>gi|324502652|gb|ADY41165.1| ATP-dependent RNA helicase an3 [Ascaris suum]
          Length = 656

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 5/111 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A +GL  L+ V TKR A DL  +L   N  V  +H ++K  ER   +   R G+ +VLV 
Sbjct: 365 ANKGL-TLVFVETKRGANDLAWFLQRNNYNVVPIHGDLKQFERERHLEMFRTGEANVLVA 423

Query: 639 INLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
             +   GLDIP    V   D  +D + ++    +T  +  +G+A    N K
Sbjct: 424 TAVAARGLDIPNVKHVINFDLPSDIDEYVHRIGRTGRVGNVGQATSFFNDK 474


>gi|152985046|ref|YP_001347529.1| transcription-repair coupling factor [Pseudomonas aeruginosa PA7]
 gi|150960204|gb|ABR82229.1| transcription-repair coupling factor [Pseudomonas aeruginosa PA7]
          Length = 1148

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 128/319 (40%), Gaps = 46/319 (14%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   + +R  +++  +   A +L  E + F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRFFAPDLPVLHFPDWETLPYDV 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P   +      I +  +   Q+ ++RH            +VV   + ++ +       
Sbjct: 81  FSPHQDI------ISQRIAALYQLPQLRHG----------VLVVPISTALHRLAPTRFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L IG  ++ + +   L    Y+  D     G F V G  I++FP   E + +R+ 
Sbjct: 125 GSSLVLDIGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-LPFRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P T + I  VE+I++     +    P    A+   +           
Sbjct: 184 LFDDEIETLRTFDPETQRSIDKVESIRLLPAREF----PLNKEAVTGFR----------- 228

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             GR  E   ++ R     + L +  +   IE Y          E   TLF+Y+P+D+ +
Sbjct: 229 --GRFRERFDVDYRRCPIYQDLASGLTPSGIEYYLPLFF-----EETATLFDYLPQDTQV 281

Query: 472 FVDESHVTIPQISGMYRGD 490
           F   S   I Q +  + GD
Sbjct: 282 F---SLPGIEQAAEQFWGD 297



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 30/103 (29%)

Query: 605 RNIRVRYMHSEVKTLERI-----EIIRDLRLG---------------------KFDVLVG 638
           R  +V Y+H+EVKT+E+      E++ + R+G                     +F+VLV 
Sbjct: 809 RGGQVYYLHNEVKTIEKCARDLAELVPEARIGIGHGQMHERELEQVMSDFYHKRFNVLVA 868

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             ++  G+D+P    + I  ADK G       L Q  GR  R+
Sbjct: 869 STIIETGIDVPSANTILIERADKFGL----AQLHQLRGRVGRS 907


>gi|313904443|ref|ZP_07837820.1| transcription-repair coupling factor [Eubacterium cellulosolvens 6]
 gi|313470779|gb|EFR66104.1| transcription-repair coupling factor [Eubacterium cellulosolvens 6]
          Length = 1128

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 17/180 (9%)

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           N+  A ++Y +F+ F P       V YY         PR D    +       + R R  
Sbjct: 59  NERKAREIYEDFRLFDPE------VMYY---------PRRDLIFYQADISGNLLTRQRMQ 103

Query: 262 ATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
             ++L+E+    V++S   C+  +  +    +  ++L  G  +   +L   L    Y+R 
Sbjct: 104 VIKALMEQKKVTVITSTGGCMDRLLPLRVLEKYTLKLSAGTEIPLSDLAEKLTSMGYERV 163

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                 G F + GD ++I+ S  E++ WR+  + + ++ I  F P + + + N+E I IY
Sbjct: 164 VQVESAGQFAIRGDIVDIY-SLTEELPWRIEFWDDLVDGIRCFDPESQRSVENLEEIMIY 222



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y H ++K  E  +++     G+ DVLV   ++  G+DI     + I DAD+ G     
Sbjct: 818 VEYAHGKMKETELEQLMYRFINGEIDVLVATTIIETGMDISNVNTMVICDADRLGL---- 873

Query: 669 TSLIQTIGRAAR-NVNSKVIL 688
           + L Q  GR  R N NS   L
Sbjct: 874 SQLYQLRGRVGRSNRNSYAFL 894


>gi|126657369|ref|ZP_01728528.1| transcription-repair coupling factor [Cyanothece sp. CCY0110]
 gi|126621356|gb|EAZ92068.1| transcription-repair coupling factor [Cyanothece sp. CCY0110]
          Length = 1160

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 7/153 (4%)

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-I 284
           VS+Y   +   Y P     +  ES +     ++  +   S+ E N+  +V++   +   +
Sbjct: 79  VSFYPTTEASPYEP-----LNPESEMIWGQMQVLSNLNLSVTENNNYAIVTTEKALQPHL 133

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
              ES+ +  + L+ G + + K    +LVK  Y+R ++  + G +   GD ++IFP   E
Sbjct: 134 PPPESFHKYCLNLQTGITEKSKIFDEALVKLGYERVNLVEVEGQWSRRGDIVDIFPVSSE 193

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            V  R+  FG+++E+I EF P T + + ++E+I
Sbjct: 194 -VPIRLEWFGDELEKIREFDPATQRSLDSIESI 225


>gi|315230174|ref|YP_004070610.1| hypothetical protein TERMP_00410 [Thermococcus barophilus MP]
 gi|315183202|gb|ADT83387.1| hypothetical protein TERMP_00410 [Thermococcus barophilus MP]
          Length = 454

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 8/114 (7%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++G R+L+ V      E L + L ER +   ++ S+  +  R EI    + G+  VLV 
Sbjct: 311 AKEGHRVLIDVRRIDHGEILVKMLKERGVNAEFLSSQ--SPNRWEIFEKFKKGEIQVLVS 368

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             LL+EG+DIPE   + +    K     S    IQTIGRA R  + +  +  D 
Sbjct: 369 -TLLKEGVDIPEISAIILAGGGK-----SDIMTIQTIGRALRPKDGREAVIVDV 416


>gi|313229621|emb|CBY18436.1| unnamed protein product [Oikopleura dioica]
          Length = 962

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 5/100 (5%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           QG R L+ V TK  A+ L   L    I+   +H + +  +R + I DL+  +  VLV  +
Sbjct: 782 QGKRTLIFVATKIFADSLGSMLVGDGIKATTIHGDRQQRDREQAINDLKANRMHVLVATD 841

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +   G+DI +  +V   D     F +   S I  IGR AR
Sbjct: 842 VAARGIDIDDVEVVINFD-----FPKELESYIHRIGRTAR 876


>gi|85708435|ref|ZP_01039501.1| transcription-repair coupling factor [Erythrobacter sp. NAP1]
 gi|85689969|gb|EAQ29972.1| transcription-repair coupling factor [Erythrobacter sp. NAP1]
          Length = 1163

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 83/193 (43%), Gaps = 19/193 (9%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQP 234
             +   M+ +  A ++ A+ +AP+      +    + F P   V  F ++    YD   P
Sbjct: 22  GAQPLVMSDLARAAKKRAVFIAPDDAAMRSVAEAARFFAPEVEVLEFPAWDCLPYDRASP 81

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
              V          ++    + R++H +T S L     +V +  + +  + +     + +
Sbjct: 82  ALSV---------SAARLSALFRLQHPSTGSQL-----LVTTINAVLQRVLTPFRIRESV 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
              K G ++  + L + L +Q Y R D  +  G F V G  ++IFPS L D   R+  FG
Sbjct: 128 RGFKPGTTIGHESLAALLTRQGYTRTDTVVDHGEFAVRGSIVDIFPSSL-DEGLRLDFFG 186

Query: 355 NDIEEISEFYPLT 367
           +++E +  F P T
Sbjct: 187 DELESLRLFDPST 199



 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%)

Query: 135 SKDITFFQMQTDYHP---SGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKTFTM--AKV 188
           ++D +F Q   D  P   + DQ AAIA +L+ + S + + +L+ G  G GKT     A  
Sbjct: 591 AEDASFNQF-VDRFPWEETDDQDAAIADVLRDLESGKPMDRLVCGDVGFGKTEVALRAAF 649

Query: 189 IEAMQ-RPAIVMAPNKILAAQLYSEFKNFF 217
           + AM  +   V+AP  +LA Q Y  FK  F
Sbjct: 650 VAAMSGKQVAVVAPTTLLARQHYENFKQRF 679


>gi|314937290|ref|ZP_07844632.1| transcription-repair coupling factor [Staphylococcus hominis subsp.
           hominis C80]
 gi|313654586|gb|EFS18336.1| transcription-repair coupling factor [Staphylococcus hominis subsp.
           hominis C80]
          Length = 1169

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 134/311 (43%), Gaps = 37/311 (11%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           L+ G++ S K   +A+      +  +++  N   A +L ++   +  H+ V      Y Y
Sbjct: 28  LVTGLSPSAKATIIAEKYLNNDKQMLLITNNLYQADKLETDILQYIDHSEV------YKY 81

Query: 232 YQPEAYVPRTDTYIEKESSINEQI--DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
                  P  D   E+ S+ + Q+  +R+R + T    ++    +V        +  VE 
Sbjct: 82  -------PVQDIMTEEFSTQSPQLMSERVR-TLTALSHDKKGLFIVPLNGLKKWLTPVEL 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    + L++GD ++  E L+ LV   Y+R+ +    G F + G  I+I+P   + V  R
Sbjct: 134 WKHHQMTLEVGDDIDVDEFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIGQPV--R 191

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           + +F  +++ I +F   T +   NVE + I   S Y+     +N     +++  +    +
Sbjct: 192 IELFDTEVDSIRDFDVETQRSNDNVEKVDITTASDYIITEDVINHLQTELQKAYEQTRPK 251

Query: 410 LEKEGR-----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
           ++K  R       E+ +L +   +D ++L    +                 + P TL +Y
Sbjct: 252 IDKSVRNDLKETYESFKLFESTFFDHQLLRRLVAFMY--------------DTPSTLIDY 297

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 298 FQKDAIVVVDE 308


>gi|16753109|ref|NP_445687.1| putative helicase [Sulfolobus islandicus filamentous virus]
 gi|81997297|sp|Q914K8|Y022_SIFVH RecName: Full=Putative helicase 22
 gi|16751779|gb|AAL27733.1| putative helicase [Sulfolobus islandicus filamentous virus]
          Length = 559

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 7/94 (7%)

Query: 589 VLTKRMA--EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           V+ +R+A  + L E + E  I   ++ S+ K  ER+E I  L+  K  VL+  +L  EGL
Sbjct: 428 VIVRRIAIAKKLAEIMRENGIIADWVSSKTKLEERMEKIEALKNEKLQVLISTSLADEGL 487

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           DIP   LV +L   K     S+  LIQ IGR  R
Sbjct: 488 DIPNLRLVVLLTQGK-----SRIKLIQRIGRVMR 516


>gi|94501739|ref|ZP_01308253.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65]
 gi|94426139|gb|EAT11133.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65]
          Length = 449

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 15/136 (11%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   E    +L   N+ V Y+H ++   ER  ++  +R G+F VLV  ++   GLDI  
Sbjct: 254 TKEKTEQTYHFLSYHNVEVGYLHGDMTQDERNHVMTQMRNGRFKVLVATDVAARGLDIQS 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
             LV   D       RS    +  IGR  R         A+    +I L ID T    + 
Sbjct: 314 IDLVINFD-----MARSGDDYVHRIGRTGR---------AEASGSAISL-IDHTEWNLKA 358

Query: 711 QLEHNKKHNINPQSVK 726
            +E   + N+N + VK
Sbjct: 359 AIERYLRVNMNHKYVK 374


>gi|301778989|ref|XP_002924913.1| PREDICTED: interferon-induced helicase C domain-containing protein
           1-like [Ailuropoda melanoleuca]
 gi|281343300|gb|EFB18884.1| hypothetical protein PANDA_014321 [Ailuropoda melanoleuca]
          Length = 1019

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 24/169 (14%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERN----IRVRYMH-------SEVKTL---ERIEII 625
           ++  R ++   T++ A  L++++ E      + V+  H       SE K +   E+ E+I
Sbjct: 709 EESARGIIFTKTRQSAYALSQWITENKKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVI 768

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R GK ++L+   +  EGLDI EC +V      + G + ++ +++Q  GR AR   S 
Sbjct: 769 SKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-ARADEST 822

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEV 732
            +L A + +  I+  I      REK +     H  N+NP+    KI+E+
Sbjct: 823 YVLVAHSNSGVIEREI--VNDFREKMMYKAIDHVQNMNPEEYARKILEL 869


>gi|296128756|ref|YP_003636006.1| transcription-repair coupling factor [Cellulomonas flavigena DSM
           20109]
 gi|296020571|gb|ADG73807.1| transcription-repair coupling factor [Cellulomonas flavigena DSM
           20109]
          Length = 1214

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 8/171 (4%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RP +V+      A +L +  + + P + V    S+ +    E   PR+DT   + +    
Sbjct: 61  RPLVVVTATGRDADELAAALRCYLPDDDVAVLPSW-ETLPHERLSPRSDTVARRVAVFR- 118

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI-VQLKIGDSVEQKELLSSL 312
              R+ H            ++V  V  +     V+   +++ V+++ G  V+  +L   L
Sbjct: 119 ---RLAHPDPEPGPTGAVRVLVLPVRALLQ-PVVDGLGELVPVEVRTGQQVDLDDLAQRL 174

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           V   Y R D+   RG F V G  +++FP   ED   RV ++G D+EEI  F
Sbjct: 175 VDAAYTRVDMVERRGEFAVRGGILDVFPP-TEDHPLRVELWGEDVEEIRWF 224


>gi|283768938|ref|ZP_06341847.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
           aureus H19]
 gi|283461119|gb|EFC08205.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
           aureus H19]
          Length = 1168

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 93/191 (48%), Gaps = 15/191 (7%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L++G+ ++  + L+ LV   YKR+ +    G F +    I+IFP   E +
Sbjct: 130 VEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRAGIIDIFPLIGEPI 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   N+E + I   S Y+     +    +++KEELK  
Sbjct: 190 --RIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVI----RHLKEELKTA 243

Query: 407 LIELEKEGRLLEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   ++ ++ R + + TY+  ++ E+T    Q +     ++      E P T+ +Y
Sbjct: 244 Y--ENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY-----ETPSTIIDY 296

Query: 465 IPEDSLLFVDE 475
             +D+++ VDE
Sbjct: 297 FQKDAIIAVDE 307


>gi|162329311|ref|YP_001604365.1| putative helicase [Acidianus filamentous virus 3]
 gi|157310688|emb|CAJ31513.1| putative helicase [Acidianus filamentous virus 3]
          Length = 564

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 589 VLTKRM--AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           V+ +R+  A  L+E   E  I   Y+ S+    ER++ I +L+ GK   L+  +L  EGL
Sbjct: 433 VIVRRISVARKLSEMFNENGIIADYVTSQTTLEERMKKIENLKNGKIQTLIATSLADEGL 492

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           DIP   L+ +L   K     S+  L+Q IGR  R
Sbjct: 493 DIPNLRLIVLLSQGK-----SRIKLVQRIGRVMR 521


>gi|325696972|gb|EGD38859.1| DNA helicase RecG [Streptococcus sanguinis SK160]
          Length = 671

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+LT Y +    +V  +H ++K+ E+  I++D + G+ D+LV   ++  G+++P   +
Sbjct: 484 LEEELTAY-FGHQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R    S  +L A+  T+S
Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582


>gi|322388485|ref|ZP_08062088.1| transcription-repair coupling factor [Streptococcus infantis ATCC
           700779]
 gi|321140798|gb|EFX36300.1| transcription-repair coupling factor [Streptococcus infantis ATCC
           700779]
          Length = 1167

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/233 (20%), Positives = 108/233 (46%), Gaps = 13/233 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           +LLLG++GS K+  +A  ++  Q   +VM      A +L ++  +    + V      Y 
Sbjct: 30  ELLLGLSGSAKSLAIASSVKN-QNKILVMTSTYGEADRLVNDLISILGTDMV------YP 82

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
           +   ++  P  +  +  +  I  +++ +R    +S   +   +V +  +    +   + +
Sbjct: 83  FLVDDS--PMVEFLVSSQEKIFSRVEALRFLRDKS---QKGILVCNMAASRLFLPDPQVF 137

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
              +++L++G+  EQ+EL + L+   YK+      +G F + GD ++IF +  +   +R+
Sbjct: 138 DNSVLKLEVGEECEQRELKNQLISLGYKKVTQVQSQGEFSLRGDILDIFETS-QLSPYRI 196

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
             FG++I+ I EF   T     +   + IY  S  +      N   ++++ E+
Sbjct: 197 EFFGDEIDGIREFDADTQLSKDSQSQVLIYPASDILLTVEDYNRGQQFLEHEI 249


>gi|77411312|ref|ZP_00787661.1| reticulocyte binding protein [Streptococcus agalactiae CJB111]
 gi|77162648|gb|EAO73610.1| reticulocyte binding protein [Streptococcus agalactiae CJB111]
          Length = 1165

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 138/307 (44%), Gaps = 33/307 (10%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G +G+ K   +A   E + +  +V+   +  + +L S+  +    + V      Y 
Sbjct: 26  QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQNDSDKLSSDISSLIGEDNV------YQ 79

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVE 288
           ++  +  VP  +      SS+++ I R+  SA R L   E+N  ++ S       + + E
Sbjct: 80  FFADD--VPAAEFIF---SSLDKSISRL--SALRFLKDPEKNGVLITSISGLRLLLPNPE 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            +S+   + +IG      +L  +LV   Y++       G F   GD ++IF    ++  +
Sbjct: 133 VFSKSQYKFEIGQECYLDKLSKNLVNLGYQKVSQVFSPGEFSQRGDILDIF-EMTQEYPY 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FG++I+ I +F   T + ++ +E+++I      +        A K +         
Sbjct: 192 RLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDIILQDADFERAKKKL--------- 242

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
               EG L+ A  +++   Y  E+L TT +     +  R+L+     E    + +YIPE 
Sbjct: 243 ----EGYLVTASEVQR--AYLSEVLSTTENHFKHSDIRRFLSIFY--EKEWGILDYIPEG 294

Query: 469 SLLFVDE 475
           + LFVD+
Sbjct: 295 TPLFVDD 301


>gi|304367670|gb|ADM26640.1| vasa-like protein [Branchiostoma floridae]
          Length = 785

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+ V TKR A+ L  YL +       +H +    ER E + D R G+  VLV  ++  
Sbjct: 590 RVLVFVETKRNADFLASYLSQSGFPTTSIHGDRLQKEREEALMDFRTGRAPVLVATSVAA 649

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADT 692
            GLDIP+  +V   D        S    +  IGR  R  N+ K I + D+
Sbjct: 650 RGLDIPKVMVVVNYD-----LPSSIDEYVHRIGRTGRVGNTGKAISFYDS 694


>gi|227509305|ref|ZP_03939354.1| transcription-repair coupling factor [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227191235|gb|EEI71302.1| transcription-repair coupling factor [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 1168

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 94/210 (44%), Gaps = 15/210 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS +T  +  +++   RP +++      A QL S+F N    + +  F     
Sbjct: 17  QLITGISGSARTLLIDNLLKTTTRPVVMVVDTLFHADQLVSDFSNLLEDDQIFEF----- 71

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + ++ + +    R  A   L+     ++V+SVS +   + S + 
Sbjct: 72  --------PVEEMGAAELATSSPEYKAQRVLALNKLISGEPAVIVTSVSGLKRLLPSPDQ 123

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +S   + + +    + ++L   L +  Y  Q +    G F + G  +++FP + +D   R
Sbjct: 124 FSDAELTIDMDSEYDLEKLKLKLHQMGYTFQKLVAAPGDFSIRGSILDVFPLNNQDPV-R 182

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           +  F  +++ +  F     + I+ ++TI+I
Sbjct: 183 IDFFDTEVDSMRLFDVSNQRSIKTIDTIQI 212



 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y+H ++   +  +I+ D   G++DVLV   ++  G+DIP    + + +AD  G L
Sbjct: 845 DARIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNTLFVENADHMG-L 903

Query: 666 RSKTSLIQTIGRAAR 680
                L   IGR++R
Sbjct: 904 SQLYQLRGRIGRSSR 918


>gi|322386106|ref|ZP_08059743.1| DNA helicase RecG [Streptococcus cristatus ATCC 51100]
 gi|321269875|gb|EFX52798.1| DNA helicase RecG [Streptococcus cristatus ATCC 51100]
          Length = 671

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+L  Y +    +V  +H  +K  E+  I++D + GK D+LV   ++  G+++P   +
Sbjct: 484 LEEELKAY-FANQAQVALLHGRMKNDEKEAIMQDFKDGKTDILVSTTVIEVGVNVPNATI 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R N  S  +L A+  T+S
Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGNKQSYAVLVANPKTES 582


>gi|315655508|ref|ZP_07908407.1| DNA helicase RecG [Mobiluncus curtisii ATCC 51333]
 gi|315490163|gb|EFU79789.1| DNA helicase RecG [Mobiluncus curtisii ATCC 51333]
          Length = 816

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RIL TV   + A  LT     RNI +   HS + +  + + + D   G+  +LV   ++ 
Sbjct: 596 RILHTV--TQTAAQLTALPIFRNIPIGVAHSNLDSGAKQQAVSDFAAGRTPLLVSTTVVE 653

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+D+PE  ++ ILDAD+ G     + L Q  GR  R     V L
Sbjct: 654 VGMDVPEASMMIILDADRYGI----SQLHQLRGRIGRGSRPGVCL 694


>gi|228476216|ref|ZP_04060919.1| transcription-repair coupling factor [Staphylococcus hominis SK119]
 gi|228269701|gb|EEK11200.1| transcription-repair coupling factor [Staphylococcus hominis SK119]
          Length = 1169

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 138/311 (44%), Gaps = 37/311 (11%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           L+ G++ S K   +A+      +  +++  N   A +L ++   +  H+ V      Y Y
Sbjct: 28  LVTGLSPSAKATIIAEKYLNDDKQMLLITNNLYQADKLETDILQYIDHSEV------YKY 81

Query: 232 YQPEAYVPRTDTYIEKESSINEQI--DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
                  P  D   E+ S+ + Q+  +R+R + T    ++    +V        +  VE 
Sbjct: 82  -------PVQDIMTEEFSTQSPQLMSERVR-TLTALSHDKKGLFIVPLNGLKKWLTPVEL 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    + L++GD ++  E L+ LV   Y+R+ +    G F + G  I+I+P   + V  R
Sbjct: 134 WKHHQMTLEVGDDIDVDEFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIGQPV--R 191

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           + +F  +++ I +F   T +   N+E + I   S Y+     +N         L+ +L +
Sbjct: 192 IELFDTEVDSIRDFDVETQRSNDNIEKVDITTASDYIITEDVIN--------HLQTKLQK 243

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN--YSRYLTGRNPG---EPPPTLFEY 464
             ++ R     ++++ +  DL+  ET  S +  E+  +   L  R      + P TL +Y
Sbjct: 244 AYEQTR----PKIDKSVRNDLK--ETYESFKLFESTFFDHQLLRRLVAFMYDTPSTLIDY 297

Query: 465 IPEDSLLFVDE 475
              D+++ VDE
Sbjct: 298 FQNDAIVVVDE 308


>gi|313125011|ref|YP_004035275.1| ercc4-like helicase [Halogeometricum borinquense DSM 11551]
 gi|312291376|gb|ADQ65836.1| ERCC4-like helicase [Halogeometricum borinquense DSM 11551]
          Length = 843

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 19/167 (11%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK-------TLERIEIIRDL 628
            L  Q G R+++   ++  AE LT++L E     R++    K         E+ E + + 
Sbjct: 365 TLGIQDGERVIVFTESRDTAEALTDFLSESFDARRFVGQGDKEGSDGMTQKEQQETLDEF 424

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI- 687
           R G+F+VLV  ++  EGLD+PE  LV   +      + +    IQ  GR  R    +VI 
Sbjct: 425 RNGEFEVLVSTSVAEEGLDVPEVDLVLFFEP-----VPTAIRSIQRKGRTGRQAEGRVIV 479

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           L A+         I   +RRREK+++   +   + + V +++ E +D
Sbjct: 480 LMAENTRDEAYFWI---SRRREKEMKSELR---DLKGVADEVEEELD 520


>gi|254786005|ref|YP_003073434.1| transcription-repair coupling factor [Teredinibacter turnerae
           T7901]
 gi|237683594|gb|ACR10858.1| transcription-repair coupling factor [Teredinibacter turnerae
           T7901]
          Length = 1157

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 67/322 (20%), Positives = 130/322 (40%), Gaps = 61/322 (18%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +  SG   ++ +  +      +V+AP+   A    S+ +           V  ++ ++  
Sbjct: 24  IGSSGAALSIVESAQNFSGNCVVVAPDMATAEIFKSDIEVLQKGRNNGRKVYLFNDWETL 83

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY--SQM 293
            Y    D++   +  I+E++  + H     L   ++CI++ + S +        Y  S  
Sbjct: 84  PY----DSFSPHQDIISERMRCLYH-----LHASDNCIIIVASSTLLQRLPPTDYILSHS 134

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
           +V LK+ D ++++E    L    Y   D     G F V G  I+++P      A+R+ +F
Sbjct: 135 LV-LKVNDQLDREEFRHHLTNSGYTSVDTVYQHGEFAVRGALIDVYPMG-SRAAYRIELF 192

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
            + ++ + EF P T + I  VE+I++     +   +  +N          K R  E    
Sbjct: 193 DDSVDSLREFDPETQRTITQVESIELLPGKEFPFDKAGINA--------FKSRWYE---- 240

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG----------EPPPTLFE 463
                        T+D++      +C   ++ S   +G +P           +   TLF+
Sbjct: 241 -------------TFDVDH----SACPVFQDIS---SGLSPAGVEYYLPLFFDETATLFD 280

Query: 464 YI---PEDSLLFVDESHVTIPQ 482
           Y+   PE +LLFV   H  +PQ
Sbjct: 281 YLADAPEKTLLFV---HEKVPQ 299


>gi|218710049|ref|YP_002417670.1| transcription-repair coupling factor [Vibrio splendidus LGP32]
 gi|218323068|emb|CAV19245.1| transcription-repair coupling factor [Vibrio splendidus LGP32]
          Length = 1153

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 23/238 (9%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           LKG   ++ +  L+G   S    T+AK+ E      ++  P+  +A +L SE + F  H 
Sbjct: 12  LKGAGDKKHIGNLVG---SSLALTIAKLAEQHNSHTLLAVPDPQIALKLQSEIEQFTAHE 68

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
                V+ +  ++   Y    D++   +  I+++I R+      +L    D I +  +S 
Sbjct: 69  -----VALFPDWETLPY----DSFSPHQEIISDRIARLY-----ALPTLKDGITIVPIST 114

Query: 281 IYGIGSVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
           +    S   +  Q  + +K GD    ++L   L K  Y+  D     G +   G  +++F
Sbjct: 115 LLQRQSPRDFLLQHTLMVKTGDLYSLEKLRLQLEKSGYRYVDQVFGPGEYASRGSILDLF 174

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           P   +D  +R+  F ++I+ I  F P   + I ++  I++     +    PT  TA++
Sbjct: 175 PMGSKD-PYRIDFFDDEIDTIRTFDPENQRSIEDISEIRLLPAHEF----PTSETAIE 227


>gi|301106548|ref|XP_002902357.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262098977|gb|EEY57029.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 829

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI+R  RLG+F+VLV   +  EGLDI E  L+   DA     L S   +IQ +GR  R  
Sbjct: 585 EIVRRFRLGEFNVLVATCIAEEGLDIGEVDLIVSFDA-----LTSPVRMIQRMGRTGRKR 639

Query: 683 NSKVIL 688
             +VI+
Sbjct: 640 VGRVII 645


>gi|301106324|ref|XP_002902245.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
 gi|262098865|gb|EEY56917.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
          Length = 2680

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 13/137 (9%)

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            R G+  +LV  N+L EGLD+PEC LV   D      +   TSLIQ+ GR AR+ +S  I
Sbjct: 645 FRQGRIRLLVATNVLEEGLDVPECSLVIQFDG-----VIGVTSLIQSRGR-ARHRDSSFI 698

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME------VIDPILLEDA 741
           ++   + K     + E  +R    + +     +N ++  E++M        +DP +  + 
Sbjct: 699 IFCSAVGKERNQRLVENEKRL-VLMANKAAARLNSKATVEELMGSYSEDMAVDPSVAANE 757

Query: 742 ATTNISIDAQQLSLSKK 758
            T+ ++  A   +++ K
Sbjct: 758 ETSALAARATFDAMADK 774


>gi|320530140|ref|ZP_08031210.1| transcription-repair coupling factor [Selenomonas artemidis F0399]
 gi|320137573|gb|EFW29485.1| transcription-repair coupling factor [Selenomonas artemidis F0399]
          Length = 1094

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 21/229 (9%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP-AIVMAPNKILAAQLYSEFK 214
           A+ +L + + S+ +  L  G  GS K   +A   +   RP AIV A  + L A    +  
Sbjct: 13  AVRKLSEELASQPQQILAHGCAGSLKHAALAAAYDGTPRPLAIVTAGRESLRA-WQEDLT 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM--RHSATRSLLERNDC 272
              P           D Y+    +P  D  +       + ++R   R +    LL R   
Sbjct: 72  ALLPEA---------DVYE----LPELDYALAAVQGAAKGMERAAQRMNILGRLLRREPI 118

Query: 273 IVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV++ +      G S   +S+  + L++GD++ ++ELL+ +V   Y+        G F V
Sbjct: 119 IVLADIGAAAQKGLSAAEFSRASLSLRLGDTLVREELLARMVGMGYEHAAEVEHVGQFSV 178

Query: 332 CGDSIEIFP-SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            G  ++IFP + L  +  R+  F  +I+ + E+  +T + I+N+ T  I
Sbjct: 179 RGGIVDIFPINALSPI--RIEFFDAEIDSMREYDAVTRRSIKNISTASI 225



 Score = 37.7 bits (86), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 23/135 (17%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM E L   + E  I   +       LE  +++ D   G +D+L+  +++  G+D+    
Sbjct: 776 RMREHLLRLVPEARIATAHGQMNEDILE--QVMMDFYEGHYDILLATSIIENGIDVANAN 833

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
            V I DAD+ G     + L Q  GR  R               S ++A    T RR+K L
Sbjct: 834 TVIIYDADRFGL----SQLYQMRGRVGR---------------SAKMAFAYFTYRRDKVL 874

Query: 713 EHNKKHNINPQSVKE 727
               +  +  Q++KE
Sbjct: 875 SETAEKRL--QAMKE 887


>gi|221230362|ref|YP_002503778.1| ATP-dependent DNA helicase RecG [Mycobacterium leprae Br4923]
 gi|219933469|emb|CAR71766.1| ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
          Length = 743

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 11/103 (10%)

Query: 599 TEYLYER-------NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
            E LY R       N+R+  MH  +   E+   +   R G+ DVLV  N++  G+D+P  
Sbjct: 544 AEGLYARLRSGELANVRLALMHGRLSADEKDAAMMAFRAGEIDVLVCTNVIEVGVDVPNA 603

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
            ++ ++DAD+ G     + L Q  GR  R  +  + L A  ++
Sbjct: 604 TIMLVMDADRFGI----SQLHQLRGRIGRGTHPSLCLLASWVS 642


>gi|302339041|ref|YP_003804247.1| transcription-repair coupling factor [Spirochaeta smaragdinae DSM
           11293]
 gi|301636226|gb|ADK81653.1| transcription-repair coupling factor [Spirochaeta smaragdinae DSM
           11293]
          Length = 1128

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 111/233 (47%), Gaps = 30/233 (12%)

Query: 266 LLERNDCIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           +L+ +  I+V+S+ + +  +   ES  Q +V + IG + +   L   LV   Y +     
Sbjct: 113 MLKGDHVILVASLRAFLTPVPPPESIKQTLVPITIGGAFDPISLRDRLVSYGYTKVPKVT 172

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
           +RG F + G+ ++IF    ED   R+    +++E+I+ F         +V+T K    S 
Sbjct: 173 VRGEFALRGEVLDIFLGG-EDEPVRIVFEWDEVEKITRF---------DVDTQK----ST 218

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
               R TL    + I  + ++R++E+     L  +Q   Q+  + LE L   G C+  EN
Sbjct: 219 EELKRVTLYPFHELIWSDERIRMLEVN----LPPSQ---QKKAF-LEELAAKGGCRDEEN 270

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDS--LLFVDESHVTIPQISGMYRGDFHRKA 495
           +  +    N   PP TL +Y+ +D+  LLF +E  ++  Q  G    + +RKA
Sbjct: 271 F--FAASFN---PPGTLLDYLNDDAMLLLFEEERLISGAQTLGKEYRELYRKA 318


>gi|332670437|ref|YP_004453445.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332339475|gb|AEE46058.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
          Length = 596

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 6/119 (5%)

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V T+  AE++   L ER I   ++  +V   +R +I+  LR G  DVLV  ++   GLD+
Sbjct: 271 VRTRGAAEEVGSALVERGISAAHISGDVAQSDREKIVDRLRSGALDVLVATDVAARGLDV 330

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-AIDETTR 706
              GLV   D  +E       + +  IGR  R     V L   T  +  +L  I+ TTR
Sbjct: 331 ERIGLVVNFDVPRE-----AETYVHRIGRTGRAGREGVALSFVTPAEQSRLRTIERTTR 384


>gi|158290214|ref|XP_311826.4| AGAP003047-PA [Anopheles gambiae str. PEST]
 gi|157017787|gb|EAA07964.4| AGAP003047-PA [Anopheles gambiae str. PEST]
          Length = 636

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+LY  N  V  +H +    ER E +R  R G+  +LV   +   G
Sbjct: 437 LIFVETKKAADSLEEFLYNHNFPVTSIHGDRTQAEREEALRLFRCGRCPILVATAVAARG 496

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           LDIP    V   D   E         +  IGR  R  N
Sbjct: 497 LDIPNVKQVINFDLPAE-----VEEYVHRIGRTGRMGN 529


>gi|94989515|ref|YP_597615.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS10270]
 gi|94543023|gb|ABF33071.1| Transcription-repair coupling factor [Streptococcus pyogenes
           MGAS10270]
          Length = 1167

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 98/209 (46%), Gaps = 12/209 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G++GS KT  +A      Q+  +V+   +    +L S+  +      V  F  + D
Sbjct: 26  QLVMGLSGSSKTLAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                 ++  +   ++K  S  E +  +R+  ++ +L     + +S +  +     V + 
Sbjct: 84  DVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSGLRTLLPNPDVFTK 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           SQ  +QL +G+  +   L   L+   Y++    I  G F   GD ++I+    +++ +R+
Sbjct: 137 SQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             FG+DI+ I +F+P T +    +E I I
Sbjct: 194 EFFGDDIDSIRQFHPETQKSFEQLEGIFI 222


>gi|299755458|ref|XP_001828678.2| DEAD box family helicase [Coprinopsis cinerea okayama7#130]
 gi|298411233|gb|EAU93182.2| DEAD box family helicase [Coprinopsis cinerea okayama7#130]
          Length = 635

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 5/102 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           AQ+    L+  +  R  ++LT+      I  R +HS    +ER E++   R G+F VL+ 
Sbjct: 274 AQKRKSTLVFCVDLRHVQELTDTFRRFGIDARNIHSHTPAVERRELVTAFRAGEFPVLIN 333

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +L EG DIP    V +    K     S+   +Q IGR  R
Sbjct: 334 CAVLTEGADIPNIDCVLLARPTK-----SRNVFMQMIGRGMR 370


>gi|317127486|ref|YP_004093768.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315472434|gb|ADU29037.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 500

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 28/175 (16%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LTE L  R   V  +H ++K   R ++IR  + G  DV+V  ++   GLD+ +
Sbjct: 249 TKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVMVATDVAARGLDVND 308

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV------------ILYADTITKSIQ 698
              V   D  ++       S +  IGR  R     +            + Y +  T+   
Sbjct: 309 VSHVINFDLPQDS-----ESYVHRIGRTGRAGKKGISYSFVTHKEKDHLRYIEESTRQKM 363

Query: 699 LAIDETT-----RRREKQLEHNKKHNINPQSVKE------KIMEVIDPILLEDAA 742
             +D  T     R R KQ  +  K  +N  + K+      +++E  DP++L  AA
Sbjct: 364 KQVDAPTLADAMRGRHKQAVNELKKAVNNAASKQLTGEAKQLLEEFDPVVLVSAA 418


>gi|95007372|emb|CAJ20592.1| DNA helicase, putative [Toxoplasma gondii RH]
          Length = 888

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 8/113 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L + L E  IR+R +H  +K  E+ E++ +LR G  D+LV   ++  G+D+P   ++ 
Sbjct: 746 EELRKLLPE--IRIRLLHGRMKAEEKNEVLSELRGGTVDLLVATTVVEVGIDVPNASVIV 803

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           I  A++ G     T L Q  GR  R+       +   I   ++  +DE    R
Sbjct: 804 IDSAERFGL----TQLHQLRGRVGRDARHPSFCF--IILDPLKKNLDEKAMHR 850


>gi|325114293|emb|CBZ49850.1| putative ATP-dependent DNA helicase [Neospora caninum Liverpool]
          Length = 1801

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 8/104 (7%)

Query: 596  EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
            E+L + L E  IR+R +H  ++  E+ E++ +LR G  D+LV   ++  G+DIP   ++ 
Sbjct: 1411 EELRKLLPE--IRIRLLHGRMRAEEKEEVLSELRGGTVDLLVATTVVEVGIDIPNASVIV 1468

Query: 656  ILDADKEGFLRSKTSLIQTIGRAARNVN--SKVILYADTITKSI 697
            I  A++ G     T L Q  GR  R+    S   +  D + K++
Sbjct: 1469 IDSAERFGL----TQLHQLRGRVGRDARHPSFCFIILDPLNKNL 1508


>gi|329769499|ref|ZP_08260909.1| hypothetical protein HMPREF0433_00673 [Gemella sanguinis M325]
 gi|328838714|gb|EGF88312.1| hypothetical protein HMPREF0433_00673 [Gemella sanguinis M325]
          Length = 512

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 21/192 (10%)

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE--------INL 577
           + +SATP S +++     I++  IR  G + P   IR    +V  +++E        I+ 
Sbjct: 312 VFLSATP-SKKIKSYVDDIIKIPIRYHGYLLPVPRIRKVNKKVL-IFEEKSEIMNKYISE 369

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYL---YERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              +  R L+ V    M + L  YL      +I++ Y++SE K  +R + I+     K D
Sbjct: 370 IINKKRRFLVFVPVIAMCQSLKNYLEKYISESIKIDYVYSEDK--DRSDKIQRFYNYKID 427

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NVNSKVILYAD 691
           +L+   +L  G+       V + DA  + F  +K SLIQ  GR  R   +   ++I ++D
Sbjct: 428 ILITTTILERGVTFDHLD-VMVFDAGHKNF--TKESLIQIAGRVGRKEYDNTGEIIYFSD 484

Query: 692 TITKSIQLAIDE 703
            ITK+I+ AI E
Sbjct: 485 EITKNIKHAIKE 496


>gi|325180080|emb|CCA14481.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 594

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 7/102 (6%)

Query: 582 GLRI--LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           GL+I  LL V  K   ++L + L    I V  +H++   ++R +++R+ R GK  VL+  
Sbjct: 406 GLQIPALLFVQNKERVDELYQELLYDGIHVGAIHADRSQMQRDQVLREFRAGKIWVLICT 465

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           +L+  GLD     +V   D     F +S  S I  IGR  RN
Sbjct: 466 DLICRGLDFKAVNMVINYD-----FPQSAISYIHRIGRTGRN 502


>gi|195343855|ref|XP_002038506.1| GM10578 [Drosophila sechellia]
 gi|194133527|gb|EDW55043.1| GM10578 [Drosophila sechellia]
          Length = 724

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           +T + D+YD     ++   +I++ V TKR  ++L  ++    +R   +H +    ER  +
Sbjct: 521 KTLLSDIYD----TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 576

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R GK ++LV  ++   GLD+   G+  +++ D   + ++    I  IGR  R+ N+
Sbjct: 577 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 630

Query: 685 KVILYA 690
           K   +A
Sbjct: 631 KGTSFA 636


>gi|332706023|ref|ZP_08426096.1| transcription-repair coupling factor mfd [Lyngbya majuscula 3L]
 gi|332355283|gb|EGJ34750.1| transcription-repair coupling factor mfd [Lyngbya majuscula 3L]
          Length = 1295

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 112/257 (43%), Gaps = 35/257 (13%)

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR---SLLERND---CIVVSSVS 279
            S Y+ + PE+ +      +  +     ++DR+   ++    SL++R+     IV +  +
Sbjct: 87  ASPYEPFDPESEMTWGQMQVLADLVERLKVDRLPVESSDLQPSLVQRSTHGMAIVATQAA 146

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
               +  V+++    + L  G + + K L   L +  Y+R  +    G +   GD +++F
Sbjct: 147 LQPHLPPVDAFKPYCLTLNQGMTWDGKNLDQKLAQLGYERVPLVETEGQWSRRGDIVDVF 206

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH-YVTPRPTLNTAMKY 398
           P  LE +  R+  FG+++E++ EF P T + +  ++ I +      ++  +    +  + 
Sbjct: 207 PVALE-LPVRLEWFGDELEQLREFDPATQRSLDKIDGIVLTPTDFGHIISQVLRTSKAEL 265

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           I+  L  +  E  +EG+ LE  R    I +D                            P
Sbjct: 266 IQSYLSPQEQESFEEGQSLEGSRRFLGIAFDQ---------------------------P 298

Query: 459 PTLFEYIPEDSLLFVDE 475
            +L +Y+PE++L+ +DE
Sbjct: 299 ASLLDYLPENTLIVIDE 315



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 594  MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            +A +L E + E   R+   H ++   E   I+     G+ D+LV   ++  GLDIP    
Sbjct: 962  VAAELREMILE--ARIAIAHGQLDPAELESIMLTFSNGEADILVCTTIIESGLDIPRVNT 1019

Query: 654  VAILDADKEGFLRSKTSLIQTIGRAAR 680
            + I DA K G       L Q  GR  R
Sbjct: 1020 IVIEDAHKFGL----AQLYQLRGRVGR 1042


>gi|117929120|ref|YP_873671.1| transcription-repair coupling factor [Acidothermus cellulolyticus
           11B]
 gi|117649583|gb|ABK53685.1| transcription-repair coupling factor [Acidothermus cellulolyticus
           11B]
          Length = 1192

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 22/175 (12%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY---IEKESS 250
           RP + +   +  A +L +  +   P  AV  + ++ +    E   PR DT    +     
Sbjct: 67  RPVLAVTATEREATELATALEPLLPAGAVAEYPAW-ETLPHERLSPRADTVGRRVAVRRL 125

Query: 251 INEQIDRMR--HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           + EQ   +R   +  R+LL+            + G+G +E      V+L+ GD  +  ++
Sbjct: 126 LREQGGTLRVITTPVRALLQPQ----------VAGLGDLEP-----VELRPGDEADLNDV 170

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           ++ LV   Y R D+   RG   V G  ++IFP   E    RV  FG+ IEEI  F
Sbjct: 171 VARLVAIGYHRVDLVERRGEIAVRGGILDIFPPTAEH-PLRVEFFGDRIEEIRPF 224


>gi|221482870|gb|EEE21201.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii GT1]
          Length = 1042

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 8/113 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L + L E  IR+R +H  +K  E+ E++ +LR G  D+LV   ++  G+D+P   ++ 
Sbjct: 651 EELRKLLPE--IRIRLLHGRMKAEEKNEVLSELRGGTVDLLVATTVVEVGIDVPNASVIV 708

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           I  A++ G     T L Q  GR  R+       +   I   ++  +DE    R
Sbjct: 709 IDSAERFGL----TQLHQLRGRVGRDARHPSFCF--IILDPLKKNLDEKAMHR 755


>gi|293411880|ref|ZP_06654605.1| type III restriction enzyme [Escherichia coli B354]
 gi|291469435|gb|EFF11924.1| type III restriction enzyme [Escherichia coli B354]
          Length = 519

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +  E  L  Q  L  +  V  KR  + L E + E  +RV +++ E     R   +  L
Sbjct: 355 EAIVREALLYKQHSLNCMTLVRLKRHGQILMEMMKESGLRVDFIYGESNQATRQAKLNSL 414

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA--ARNVNSKV 686
             G+ DVL+G  +L  G+D+P  G V +    K     ++  + Q +GR   A+   + V
Sbjct: 415 ASGEIDVLIGSTILDVGVDVPSVGAVILAGGGK-----AEVEMRQRVGRGLRAKKNQANV 469

Query: 687 ILYADTITKSIQLAIDETTRRR 708
               D I  S +  +  +  R+
Sbjct: 470 CFITDFIDTSNKYLLSHSYERK 491


>gi|24644479|ref|NP_524243.2| Rm62, isoform A [Drosophila melanogaster]
 gi|30923187|sp|P19109|DDX17_DROME RecName: Full=ATP-dependent RNA helicase p62
 gi|23175945|gb|AAG22213.2| Rm62, isoform A [Drosophila melanogaster]
 gi|41058179|gb|AAR99134.1| RE11923p [Drosophila melanogaster]
          Length = 719

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           +T + D+YD     ++   +I++ V TKR  ++L  ++    +R   +H +    ER  +
Sbjct: 517 KTLLSDIYD----TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 572

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R GK ++LV  ++   GLD+   G+  +++ D   + ++    I  IGR  R+ N+
Sbjct: 573 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 626

Query: 685 KVILYA 690
           K   +A
Sbjct: 627 KGTSFA 632


>gi|323490992|ref|ZP_08096186.1| transcription-repair coupling factor [Planococcus donghaensis
           MPA1U2]
 gi|323395348|gb|EGA88200.1| transcription-repair coupling factor [Planococcus donghaensis
           MPA1U2]
          Length = 1177

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/313 (19%), Positives = 133/313 (42%), Gaps = 37/313 (11%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF------KNFFPHNAVEY 224
           QL+ G++GS +      +   ++ P +++ PN + A ++Y +       K    + A E 
Sbjct: 28  QLISGLSGSARPIFYQTIWSELEEPLLIVTPNLLHAQRIYDDLVRLMGEKQVHLYPAEEL 87

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
             +   +  PE    R DT ++   S+ + I     +  R LL                 
Sbjct: 88  IAAEVSFSGPELRAHRIDT-LDHMKSVGKGIYITPVAGMRKLLPTK-------------- 132

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
              E +    +++  G+ ++  E L  LV   Y R  +    G F + G  ++I+P + E
Sbjct: 133 ---EQWDYATLRIAEGEELDTDEWLLKLVAMGYSRTPMVTTPGEFALRGGILDIYPLNFE 189

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY-ANSHYVTPRPTLNTAMKYIKEEL 403
               R+ +F  +++ +  F     + +  V+++ I  AN   ++    +  A     E+L
Sbjct: 190 HPV-RIELFDTEVDSLRLFSAEDQRSLEKVQSLCILPANELVLSADQRILLA-----EKL 243

Query: 404 KMRLIELEKEGRLLEAQRL-EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
           + +L    K+ +  + + L  Q I +D+++L+   + + +  Y+  +  ++       L 
Sbjct: 244 EAQLASSLKKIKADDTKALMMQHIQHDIDLLKQGETPEQLAKYASLIDTQS-----AFLG 298

Query: 463 EYIPEDSLLFVDE 475
           +Y P + L+F DE
Sbjct: 299 DYFPGNGLVFFDE 311



 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y H ++   E   +I     G +DVLV   ++  G+DIP    + + +AD+ G    
Sbjct: 860 RVGYAHGQMSETELESVILSFLDGDYDVLVTTTIIETGIDIPNVNTLIVYNADRMGL--- 916

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 917 -SQLYQLRGRVGRS 929


>gi|166714794|gb|ABY88109.1| UvrB [Stenotrophomonas sp. LMG 980]
          Length = 60

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 36/54 (66%)

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
           I++FP+  +  A R+ +F  ++E+I+ F PLTG+ +RN++   +Y  +HY T R
Sbjct: 2   IDVFPAESDSEALRLELFDGEVEKITLFDPLTGETLRNMQRFTVYPKTHYATTR 55


>gi|166714786|gb|ABY88105.1| UvrB [Stenotrophomonas sp. ICB134]
          Length = 60

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 36/54 (66%)

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
           I++FP+  +  A R+ +F  ++E+I+ F PLTG+ +RN++   +Y  +HY T R
Sbjct: 2   IDVFPAESDSEALRLELFDGEVEKITLFDPLTGETLRNMQRFTVYPKTHYATTR 55


>gi|77917709|ref|YP_355524.1| transcription-repair coupling factor [Pelobacter carbinolicus DSM
           2380]
 gi|77543792|gb|ABA87354.1| transcription-repair coupling factor [Pelobacter carbinolicus DSM
           2380]
          Length = 1161

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 103/225 (45%), Gaps = 21/225 (9%)

Query: 144 QTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNK 203
            T+ HP+ D+ AA    L+G+   E    LLG+TG+   F +A+++     P +++A ++
Sbjct: 7   HTELHPALDELAAT---LEGLPHTE----LLGMTGTSCAFVLARLLAENPAPLLILAASQ 59

Query: 204 ILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
             A ++ ++   +       +++ +++    EA +P            +  I+  R +  
Sbjct: 60  EQAVRITADLGFYLGRPDQVFYLPHWEMRPYEALLP------------HPAIEATRLATL 107

Query: 264 RSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
            +L + R   +V++  S +  +      + +   L+  +   ++ LL  L +  Y    +
Sbjct: 108 AALADGRALALVMTVRSVMQRVMPRRVLAGLRSCLREQELHPREALLPHLAELGYHAVPL 167

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
               GTF V GD ++++P  L +   R+  FG+ IE +  F P T
Sbjct: 168 VEDPGTFSVRGDLLDLYPPTLPEPV-RIEFFGDQIERMRPFDPTT 211


>gi|15674256|ref|NP_268429.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes M1 GAS]
 gi|71909820|ref|YP_281370.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS5005]
 gi|13621331|gb|AAK33151.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes M1 GAS]
 gi|71852602|gb|AAZ50625.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS5005]
          Length = 1167

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 98/209 (46%), Gaps = 12/209 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G++GS KT  +A      Q+  +V+   +    +L S+  +      V  F  + D
Sbjct: 26  QLVMGLSGSSKTLAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                 ++  +   ++K  S  E +  +R+  ++ +L     + +S +  +     V + 
Sbjct: 84  DVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSGLRILLPNPDVFTK 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           SQ  +QL +G+  +   L   L+   Y++    I  G F   GD ++I+    +++ +R+
Sbjct: 137 SQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             FG+DI+ I +F+P T +    +E I I
Sbjct: 194 EFFGDDIDSIRQFHPETQKSFEQLEGIFI 222


>gi|121612291|ref|YP_001000171.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005129|ref|ZP_02270887.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87250493|gb|EAQ73451.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 607

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186
           ++I N  KD+ F         + DQ  A+  + K +HS+E K ++++G  G GKT  +  
Sbjct: 213 FNIANWLKDLPF-------SLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLG 265

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
             +    + AI+MAP  ILA QLY E K F P
Sbjct: 266 AALMVYPKQAILMAPTSILAYQLYEEAKKFLP 297


>gi|283955886|ref|ZP_06373376.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792546|gb|EFC31325.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 620

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186
           ++I N  KD+ F         + DQ  A+  + K +HS+E K ++++G  G GKT  +  
Sbjct: 213 FNIANWLKDLPF-------SLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLG 265

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
             +    + AI+MAP  ILA QLY E K F P
Sbjct: 266 AALMVYPKQAILMAPTSILAYQLYEEAKKFLP 297


>gi|237840713|ref|XP_002369654.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii ME49]
 gi|211967318|gb|EEB02514.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii ME49]
 gi|221503338|gb|EEE29036.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii VEG]
          Length = 1042

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L + L E  IR+R +H  +K  E+ E++ +LR G  D+LV   ++  G+D+P   ++ 
Sbjct: 651 EELRKLLPE--IRIRLLHGRMKAEEKNEVLSELRGGTVDLLVATTVVEVGIDVPNASVIV 708

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNV 682
           I  A++ G     T L Q  GR  R+ 
Sbjct: 709 IDSAERFGL----TQLHQLRGRVGRDA 731


>gi|157414757|ref|YP_001482013.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385721|gb|ABV52036.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747396|gb|ADN90666.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           M1]
 gi|315931095|gb|EFV10069.1| DEAD/DEAH box helicase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 607

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186
           ++I N  KD+ F         + DQ  A+  + K +HS+E K ++++G  G GKT  +  
Sbjct: 213 FNIANWLKDLPF-------SLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLG 265

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
             +    + AI+MAP  ILA QLY E K F P
Sbjct: 266 AALMVYPKQAILMAPTSILAYQLYEEAKKFLP 297


>gi|295397825|ref|ZP_06807889.1| transcription-repair coupling factor [Aerococcus viridans ATCC
           11563]
 gi|294973922|gb|EFG49685.1| transcription-repair coupling factor [Aerococcus viridans ATCC
           11563]
          Length = 1233

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/227 (20%), Positives = 99/227 (43%), Gaps = 33/227 (14%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA-QLYSEFKNFFPHNAVEYF----- 225
           L LG+ G+ + +    ++       +V+  N +L A   Y++ ++ F  + +  F     
Sbjct: 27  LYLGLQGASRAYMAKTLLNLASEQKVVIVTNNLLQADHFYNDLQSDFSDDQLHLFNVPES 86

Query: 226 -VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
             + +    PEA   R              ++  R + T  +L          ++ ++G+
Sbjct: 87  VAADWAIASPEALADRLTV-----------LNWARDTKTTGVL----------ITPMFGL 125

Query: 285 GSV----ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
             +    E +    + +K+GD +E   L+  L+ Q Y+R +I +  G     GD ++ +P
Sbjct: 126 KRLLTPTEIWDNTRLLVKLGDELEPATLVQCLLNQGYQRAEIVMTPGEMSQRGDIVDFYP 185

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            + E    RVS+  +++E IS F P T + +++  +I I  +  ++ 
Sbjct: 186 INAE-YPIRVSLAFDEVERISTFDPNTQKSLQDQPSINIQPSQEFIV 231



 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H ++  ++   ++ D  LG+FDVLV   ++  G+DIP    + +  AD+ G    
Sbjct: 860 RVAIAHGQMTVVQLENVMMDFVLGEFDVLVTTTIIETGVDIPNANTLLVEGADRMGL--- 916

Query: 668 KTSLIQTIGRAARN 681
            ++L Q  GR  R+
Sbjct: 917 -STLYQLRGRVGRS 929


>gi|50292931|ref|XP_448898.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74664283|sp|Q8TFK8|DED1_CANGA RecName: Full=ATP-dependent RNA helicase DED1
 gi|20086311|gb|AAM08102.1| DED1p [Candida glabrata]
 gi|49528211|emb|CAG61868.1| unnamed protein product [Candida glabrata]
          Length = 617

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           LAA      L+ V TKRMA+ LT++L  +N     +H +    ER   +   R G+ ++L
Sbjct: 397 LAASNDNLTLIFVETKRMADQLTDFLIMQNFSATAIHGDRSQAERERALAAFRSGRANIL 456

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D   +         +  IGR  R  N+ V
Sbjct: 457 VATAVAARGLDIPNVTHVINYDLPSD-----VDDYVHRIGRTGRAGNTGV 501


>gi|153950967|ref|YP_001398499.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938413|gb|ABS43154.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 607

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186
           ++I N  KD+ F         + DQ  A+  + K +HS+E K ++++G  G GKT  +  
Sbjct: 213 FNIANWLKDLPF-------ALTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLG 265

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
             +    + AI+MAP  ILA QLY E K F P
Sbjct: 266 AALMVYPKQAILMAPTSILAYQLYDEAKKFLP 297


>gi|86149008|ref|ZP_01067240.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597069|ref|ZP_01100305.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218562119|ref|YP_002343898.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|85840366|gb|EAQ57623.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190758|gb|EAQ94731.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112359825|emb|CAL34612.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284925731|gb|ADC28083.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 607

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186
           ++I N  KD+ F         + DQ  A+  + K +HS+E K ++++G  G GKT  +  
Sbjct: 213 FNIANWLKDLPF-------SLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLG 265

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
             +    + AI+MAP  ILA QLY E K F P
Sbjct: 266 AALMVYPKQAILMAPTSILAYQLYEEAKKFLP 297


>gi|74004732|ref|XP_545493.2| PREDICTED: similar to Interferon induced with helicase C domain
           protein 1 (Helicase with 2 CARD domains) (Helicard)
           (Melanoma differentiation-associated protein 5) (MDA-5)
           (RNA helicase-DEAD box protein 116)
           (Murabutide-down-regulated protein)... [Canis
           familiaris]
          Length = 1029

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 10/115 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ E+I   R GK ++L+   +  EGLDI EC +V      + G + ++ +++Q  GR A
Sbjct: 773 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 826

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEV 732
           R   S  +L A + +  I+  I      REK +     H  N+NP+    KI+E+
Sbjct: 827 RADESTYVLVAHSNSGVIEREI--VNDFREKMMYKAIDHVQNMNPEEYAHKILEL 879


>gi|195502160|ref|XP_002098101.1| GE24123 [Drosophila yakuba]
 gi|194184202|gb|EDW97813.1| GE24123 [Drosophila yakuba]
          Length = 719

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           +T + D+YD     ++   +I++ V TKR  ++L  ++    +R   +H +    ER  +
Sbjct: 519 KTLLSDIYD----TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 574

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R GK ++LV  ++   GLD+   G+  +++ D   + ++    I  IGR  R+ N+
Sbjct: 575 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 628

Query: 685 KVILYA 690
           K   +A
Sbjct: 629 KGTSFA 634


>gi|194898941|ref|XP_001979021.1| GG10666 [Drosophila erecta]
 gi|190650724|gb|EDV47979.1| GG10666 [Drosophila erecta]
          Length = 720

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           +T + D+YD     ++   +I++ V TKR  ++L  ++    +R   +H +    ER  +
Sbjct: 517 KTLLSDIYD----TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 572

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R GK ++LV  ++   GLD+   G+  +++ D   + ++    I  IGR  R+ N+
Sbjct: 573 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 626

Query: 685 KVILYA 690
           K   +A
Sbjct: 627 KGTSFA 632


>gi|19745206|ref|NP_606342.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS8232]
 gi|19747295|gb|AAL96841.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes MGAS8232]
          Length = 1167

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 98/209 (46%), Gaps = 12/209 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G++GS K   +A      Q+  +V+   +    +L S+  +      V  F  + D
Sbjct: 26  QLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                 ++  +   ++K  S  E +  +R+  ++ +L     + +SS+  +     V + 
Sbjct: 84  DVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSSLRTLLPNPDVFTK 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           SQ  +QL +G+  +   L   L+   Y++    I  G F   GD ++I+    +++ +R+
Sbjct: 137 SQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             FG+DI+ I +F+P T +    +E I I
Sbjct: 194 EFFGDDIDSIRQFHPETQKSFEQLEGIFI 222


>gi|166714778|gb|ABY88101.1| UvrB [Stenotrophomonas sp. ICB130]
          Length = 60

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 37/54 (68%)

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
           I++FP+  +  A R+ +F  ++E+I+ F PLTG+ +RN++ + +Y  +HY T R
Sbjct: 2   IDVFPAESDSEALRMELFDGEVEKITLFDPLTGETLRNMKRLTVYPKTHYATTR 55


>gi|113477812|ref|YP_723873.1| type III restriction enzyme, res subunit [Trichodesmium erythraeum
           IMS101]
 gi|110168860|gb|ABG53400.1| type III restriction enzyme, res subunit [Trichodesmium erythraeum
           IMS101]
          Length = 590

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 22/176 (12%)

Query: 574 EINLAAQQGLRILLTVLTKRM--------AEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           EI L  +  LR L  +L +          A++ T Y    +  +  +  +    ER E++
Sbjct: 315 EIALGTEGKLRTLSNLLVQHFPERTLIFTADNTTVYRISHDFLIPAITHQTPVKERHEVL 374

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NV 682
              R G++  +V  ++L EG+D+P+  +  IL         S+   IQ +GR  R   + 
Sbjct: 375 SKFRTGEYKTIVASHVLNEGVDVPDARVAVILSGTG-----SEREYIQRLGRVLRRGSDK 429

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI---MEVIDP 735
           N   ILY      + +   ++T+RRR   ++  K H    +  +  +   +E+I P
Sbjct: 430 NKLAILYEVVTENTTE---EQTSRRRRAGIKRKKSHQDQDEKQENSVVQQLEIIKP 482


>gi|295090936|emb|CBK77043.1| transcription-repair coupling factor [Clostridium cf.
           saccharolyticum K10]
          Length = 1185

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 114/258 (44%), Gaps = 21/258 (8%)

Query: 228 YYDY--YQPEAYV-PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG- 283
           Y DY  + P  ++ P  D            + R R    + L+E     +V++V  +   
Sbjct: 67  YEDYRTFDPAVFLYPAKDLLFYSSDIHGNLLTRQRMQVFKHLMEDEAGTIVTTVDGLMDR 126

Query: 284 ---IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT--FRVCGDSIEI 338
              +  + +    +V    G+S++ +E+  +L    Y+R  +G + G   F V G  I+I
Sbjct: 127 LLPLSEIRNSRIAVVS---GESLKTEEMKEALAGLGYER--VGQVDGMGQFSVRGGIIDI 181

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP   E++  R+ ++G++++ I  F P + + +  +E ++I   +  +  +  +   +  
Sbjct: 182 FPL-TEELPVRIELWGDEVDSIRSFDPESQRSVEELERVEICPATELLLEKSRVEKGLSK 240

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           I++E+K     L  + +  EA R+E  +    E +        +  + +Y       E  
Sbjct: 241 IEKEMKKYGKALRDQMKNEEAHRIEGLVRELSEEIREGFKVHGLGGFIQYFA-----EKT 295

Query: 459 PTLFEYIPEDSL-LFVDE 475
            +  EY P++ L +F+DE
Sbjct: 296 VSFLEYFPKEELAVFLDE 313



 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 14/161 (8%)

Query: 554 LVDPPVEIRSARTQVEDVYDE-----INLAAQQGLRILLTVLTKRMAEDLTEYLYER--N 606
           L +PPV+    +T V +  DE     IN    +G ++          E++  ++     +
Sbjct: 805 LEEPPVDRLPIQTYVMEYNDEMVREAINREVARGGQVYYVYNRVNNIEEIANHVASLVPD 864

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
            +V + H +++  E   I+ D   G  DVLV   ++  GL+IP    + I DAD+ G   
Sbjct: 865 AQVTFAHGQMREHELERIMLDFVNGDIDVLVSTTIIETGLNIPNANTIIIHDADRLGL-- 922

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
             + L Q  GR  R+  +    YA  + +  +L  +E  +R
Sbjct: 923 --SQLYQIRGRVGRSSRTS---YAFLMYRRDKLLREEAEKR 958


>gi|224369910|ref|YP_002604074.1| Mfd [Desulfobacterium autotrophicum HRM2]
 gi|223692627|gb|ACN15910.1| Mfd [Desulfobacterium autotrophicum HRM2]
          Length = 1165

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 104/244 (42%), Gaps = 33/244 (13%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I QLL  I  R+    L GV GSG  +  AK+  +     +V+ P++  A     E + +
Sbjct: 2   IKQLLDTIAKRDTSIDLTGVHGSGSAYITAKLFASNDCSLVVVLPDRKRAMAFMDELEFY 61

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVV 275
            P                  Y P  +    K  S + +    R +A   LL R +  ++V
Sbjct: 62  LPKGKRRVI-----------YFPGYNILPFKALSFHSETASKRIAALYKLLSRREHHLIV 110

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDS---------VEQKELLSSLVKQQYKRQDIGIIR 326
           + V  +          +MI + ++ D+         +++  L++ L    Y R  +    
Sbjct: 111 THVDTL--------LLKMIPRKRLADAADLVINNEEIDRDLLVARLNAGGYIRTSLVEEP 162

Query: 327 GTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY-ANSH 384
           G + V G  +++F PS    V  R+ +FG+ +E +  F P+T + I++++ I+I  AN  
Sbjct: 163 GDYSVRGGILDVFSPSATFPV--RIELFGDYVESLRFFSPITQRGIKDIQEIEIVPANEA 220

Query: 385 YVTP 388
            + P
Sbjct: 221 VIDP 224


>gi|332158368|ref|YP_004423647.1| DNA repair protein RAD25 [Pyrococcus sp. NA2]
 gi|331033831|gb|AEC51643.1| DNA repair protein RAD25 [Pyrococcus sp. NA2]
          Length = 442

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 8/102 (7%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++G R+L+ V      E L + L E+ I   ++ S+  +  R EI+   + G+  VLV 
Sbjct: 309 AKEGHRVLIDVKRIDHGEILVKMLKEKGINAEFLSSQ--SPNRWEILEKFKKGEIQVLVS 366

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LL+EG+DIPE   + +    K     S    IQTIGRA R
Sbjct: 367 -TLLKEGVDIPEISAIILAGGGK-----SDIMTIQTIGRALR 402


>gi|61657450|emb|CAI44362.1| primosomal protein N [Thermotoga sp. SG1]
          Length = 735

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 9/141 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+++  +L  Y  E+ +           +E  + I  L  G+ D+LVG  ++ +  D+PE
Sbjct: 505 TEKIERELQRYFPEKRVVRVDREVVEDVMEVEDYINRLISGEIDILVGTRMVTKSFDVPE 564

Query: 651 CGLVAILDADKEGF-------LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-AID 702
            GLV +LD D   F       LR+   +IQ  GRA+R    + IL      + + + AI+
Sbjct: 565 IGLVCVLDVDSLIFLPDFSASLRAFQLIIQVFGRASRKGTGRAILQTHNPDEEVIIRAIE 624

Query: 703 ETTRR-REKQLEHNKKHNINP 722
           E      E++LE  K     P
Sbjct: 625 EDVEGFYERELERRKSLGYPP 645


>gi|3150215|emb|CAA19182.1| ATP-dependent DNA helicase [Mycobacterium leprae]
          Length = 592

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N+R+  MH  +   E+   +   R G+ DVLV  N++  G+D+P   ++ ++DAD+ G  
Sbjct: 407 NVRLALMHGRLSADEKDAAMMAFRAGEIDVLVCTNVIEVGVDVPNATIMLVMDADRFGI- 465

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTIT 694
              + L Q  GR  R  +  + L A  ++
Sbjct: 466 ---SQLHQLRGRIGRGTHPSLCLLASWVS 491


>gi|171778161|ref|ZP_02919418.1| hypothetical protein STRINF_00254 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283143|gb|EDT48567.1| hypothetical protein STRINF_00254 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 432

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 8/99 (8%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+ ++ S  KT  R+E++ + R GK  +LV   +L  G+  P C  V +L A+ +  L S
Sbjct: 329 RIGFVSS--KTENRLELVEEFRQGKLTILVTTTILERGVTFP-CVDVFVLLANHK--LYS 383

Query: 668 KTSLIQT---IGRAARNVNSKVILYADTITKSIQLAIDE 703
           K++L+Q    +GRAA     +++   D +TK+++ AI E
Sbjct: 384 KSALVQISGRVGRAAERPTGELLFLHDGVTKAMKKAISE 422


>gi|256844410|ref|ZP_05549896.1| transcription-repair coupling factor [Lactobacillus crispatus
           125-2-CHN]
 gi|256613488|gb|EEU18691.1| transcription-repair coupling factor [Lactobacillus crispatus
           125-2-CHN]
          Length = 1164

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 15/196 (7%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + ++   +  P I++  N+  A  LY E         V+ F   
Sbjct: 24  KNSLITGANAGAFSLLLKQITTKLAAPLILIEENESKAQNLYGELSAIMADETVQIF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                P      T T +     ++ +I      A   LL     IVV++   + Y + + 
Sbjct: 81  -----PVDATIATQTAVSSPDELSSRI-----QALNFLLSGKAGIVVTTPQGLQYKLTNP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             ++Q     + G   E KEL   L+   Y+R  +    G F + GD ++++P   E+  
Sbjct: 131 TDFAQAKRSFEPGQEYELKELNEWLLASGYQRDSLVARPGEFAIRGDILDVYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEF 363
            R+  FG++I+ I EF
Sbjct: 190 VRIEFFGDEIDTIKEF 205


>gi|121945883|dbj|BAF44660.1| RNA helicase [Neobenedenia girellae]
          Length = 548

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 9/139 (6%)

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G I E+I++   +V    E    +++V+ + +E+     +   IL+   TKRM E L  +
Sbjct: 364 GQIPEKIVQKMKIV----EKFDWKSEVQKILNELLQDKDEDESILVFCNTKRMVELLEFH 419

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           LY+  ++   +H  +    R   +R LR G+ +VLV  ++   GLDIP  G V       
Sbjct: 420 LYKSGLKCGRLHGGMGQTNRDRSLRLLRDGRINVLVATSVAARGLDIPAIGAVV-----N 474

Query: 662 EGFLRSKTSLIQTIGRAAR 680
            G   +    I  +GR  R
Sbjct: 475 VGLPTNLDDYIHRVGRTGR 493


>gi|262047218|ref|ZP_06020176.1| transcription-repair coupling factor [Lactobacillus crispatus
           MV-3A-US]
 gi|312978409|ref|ZP_07790151.1| transcription-repair coupling factor [Lactobacillus crispatus
           CTV-05]
 gi|260572463|gb|EEX29025.1| transcription-repair coupling factor [Lactobacillus crispatus
           MV-3A-US]
 gi|310894752|gb|EFQ43824.1| transcription-repair coupling factor [Lactobacillus crispatus
           CTV-05]
          Length = 1164

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 15/196 (7%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + ++   +  P I++  N+  A  LY E         V+ F   
Sbjct: 24  KNSLITGANAGAFSLLLKQITTKLAAPLILIEENESKAQNLYGELSAIMADETVQIF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                P      T T +     ++ +I      A   LL     IVV++   + Y + + 
Sbjct: 81  -----PVDATIATQTAVSSPDELSSRI-----QALNFLLSGKAGIVVTTPQGLQYKLTNP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             ++Q     + G   E KEL   L+   Y+R  +    G F + GD ++++P   E+  
Sbjct: 131 TDFAQAKRSFEPGQEYELKELNEWLLASGYQRDSLVARPGEFAIRGDILDVYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEF 363
            R+  FG++I+ I EF
Sbjct: 190 VRIEFFGDEIDTIKEF 205


>gi|227878367|ref|ZP_03996322.1| transcriptional repair coupling factor [Lactobacillus crispatus
           JV-V01]
 gi|256849202|ref|ZP_05554635.1| transcriptional repair coupling factor [Lactobacillus crispatus
           MV-1A-US]
 gi|227862046|gb|EEJ69610.1| transcriptional repair coupling factor [Lactobacillus crispatus
           JV-V01]
 gi|256713978|gb|EEU28966.1| transcriptional repair coupling factor [Lactobacillus crispatus
           MV-1A-US]
          Length = 1164

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 15/196 (7%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + ++   +  P I++  N+  A  LY E         V+ F   
Sbjct: 24  KNSLITGANAGAFSLLLKQITTKLAAPLILIEENESKAQNLYGELSAIMADETVQIF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                P      T T +     ++ +I      A   LL     IVV++   + Y + + 
Sbjct: 81  -----PVDATIATQTAVSSPDELSSRI-----QALNFLLSGKAGIVVTTPQGLQYKLTNP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             ++Q     + G   E KEL   L+   Y+R  +    G F + GD ++++P   E+  
Sbjct: 131 TDFAQAKRSFEPGQEYELKELNEWLLASGYQRDSLVARPGEFAIRGDILDVYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEF 363
            R+  FG++I+ I EF
Sbjct: 190 VRIEFFGDEIDTIKEF 205


>gi|284166979|ref|YP_003405258.1| ERCC4 domain protein [Haloterrigena turkmenica DSM 5511]
 gi|284016634|gb|ADB62585.1| ERCC4 domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 820

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 16/146 (10%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-------HSEVKTLERIEIIRDL 628
            L  + G R+++   ++  AE LT++L E     R++          +   E+ E++   
Sbjct: 366 TLGLEGGERVIVFTESRDTAEALTDFLSESFDAKRFVGQGDREGSDGMTQTEQQEVLDQF 425

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           R G+F+VLV  ++  EGLD+PE  LV   +      + +    IQ  GR  R    + V+
Sbjct: 426 RGGEFEVLVSTSVAEEGLDVPEVDLVLFYEP-----VPTAIRSIQRKGRTGRQSEGRVVV 480

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
           L A+         I   +RRREK++E
Sbjct: 481 LMAEDTRDEAYFWI---SRRREKEME 503


>gi|291087006|ref|ZP_06345122.2| transcription-repair coupling factor [Clostridium sp. M62/1]
 gi|291076614|gb|EFE13978.1| transcription-repair coupling factor [Clostridium sp. M62/1]
          Length = 1187

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 114/258 (44%), Gaps = 21/258 (8%)

Query: 228 YYDY--YQPEAYV-PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG- 283
           Y DY  + P  ++ P  D            + R R    + L+E     +V++V  +   
Sbjct: 69  YEDYRTFDPAVFLYPAKDLLFYSSDIHGNLLTRQRMQVFKHLMEDEAGTIVTTVDGLMDR 128

Query: 284 ---IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT--FRVCGDSIEI 338
              +  + +    +V    G+S++ +E+  +L    Y+R  +G + G   F V G  I+I
Sbjct: 129 LLPLSEIRNSRIAVVS---GESLKTEEMKEALAGLGYER--VGQVDGMGQFSVRGGIIDI 183

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP   E++  R+ ++G++++ I  F P + + +  +E ++I   +  +  +  +   +  
Sbjct: 184 FPL-TEELPVRIELWGDEVDSIRSFDPESQRSVEELERVEICPATELLLEKSRVEKGLSK 242

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           I++E+K     L  + +  EA R+E  +    E +        +  + +Y       E  
Sbjct: 243 IEKEMKKYGKALRDQMKNEEAHRIEGLVRELSEEIREGFKVHGLGGFIQYFA-----EKT 297

Query: 459 PTLFEYIPEDSL-LFVDE 475
            +  EY P++ L +F+DE
Sbjct: 298 VSFLEYFPKEELAVFLDE 315



 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 14/161 (8%)

Query: 554 LVDPPVEIRSARTQVEDVYDE-----INLAAQQGLRILLTVLTKRMAEDLTEYLYER--N 606
           L +PPV+    +T V +  DE     IN    +G ++          E++  ++     +
Sbjct: 807 LEEPPVDRLPIQTYVMEYNDEMVREAINREVARGGQVYYVYNRVNNIEEIANHVASLVPD 866

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
            +V + H +++  E   I+ D   G  DVLV   ++  GL+IP    + I DAD+ G   
Sbjct: 867 AQVTFAHGQMREHELERIMLDFVNGDIDVLVSTTIIETGLNIPNANTIIIHDADRLGL-- 924

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
             + L Q  GR  R+  +    YA  + +  +L  +E  +R
Sbjct: 925 --SQLYQIRGRVGRSSRTS---YAFLMYRRDKLLREEAEKR 960


>gi|160943140|ref|ZP_02090377.1| hypothetical protein FAEPRAM212_00625 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445609|gb|EDP22612.1| hypothetical protein FAEPRAM212_00625 [Faecalibacterium prausnitzii
           M21/2]
          Length = 686

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 6/104 (5%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ED+ + L   + RV  MH ++K  E+  ++ D + G+ D LV   ++  G+D+P   ++ 
Sbjct: 497 EDIAKTLLP-DRRVGLMHGKLKPKEKAAVMEDFKAGRLDALVSTTVIEVGVDVPNASVMV 555

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITKSIQ 698
           I +A++ G     ++L Q  GR  R    S   L +D  ++++Q
Sbjct: 556 IENAERYGL----SALHQLRGRVGRGAAESWCFLVSDNTSEAVQ 595


>gi|295692138|ref|YP_003600748.1| transcription-repair coupling factor [Lactobacillus crispatus ST1]
 gi|295030244|emb|CBL49723.1| Transcription-repair coupling factor [Lactobacillus crispatus ST1]
          Length = 1164

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 15/196 (7%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + ++   +  P I++  N+  A  LY E         V+ F   
Sbjct: 24  KNSLITGTNAGAFSLLLKQITTKLAAPLILIEENESKAQNLYGELSAIMADETVQIF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                P      T T +     ++ +I      A   LL     IVV++   + Y + + 
Sbjct: 81  -----PVDATIATQTAVSSPDELSSRI-----QALNFLLSGKAGIVVTTPQGLQYKLTNP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             ++Q     + G   E KEL   L+   Y+R  +    G F + GD ++++P   E+  
Sbjct: 131 TDFAQAKRSFEPGQEYELKELNEWLLASGYQRDSLVARPGEFAIRGDILDVYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEF 363
            R+  FG++I+ I EF
Sbjct: 190 VRIEFFGDEIDTIKEF 205


>gi|258676573|gb|ACV87294.1| VASA DEAD-box protein [Phallusia mammillata]
          Length = 851

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A  G R L+ V TKR A+ L   L +       +H +    ER E +RD + GK  +LV 
Sbjct: 635 ADTGSRTLVFVETKRSADFLACSLCQEGYPTTSIHGDRLQQEREEALRDFKSGKCPILVA 694

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKS 696
            ++   GLDIP+   V   D   E         +  IGR  R  N+      Y D+   S
Sbjct: 695 TSVAARGLDIPKVEHVVNYDLPSE-----VDEYVHRIGRTGRCGNLGRATSFYDDSANAS 749

Query: 697 IQLAI 701
           +  ++
Sbjct: 750 LARSL 754


>gi|111225581|ref|YP_716375.1| transcription-repair coupling factor [Frankia alni ACN14a]
 gi|111153113|emb|CAJ64860.1| Transcription-repair coupling factor (TRCF) [Frankia alni ACN14a]
          Length = 1246

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 18/163 (11%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A  L +          V  F S+ +    E   PR DT  ++ + +     R+ H A+  
Sbjct: 106 AEDLTAALAGLLGPEVVAVFPSW-ETLPHERLSPRADTVGQRLAVLR----RLAHPASTG 160

Query: 266 LLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           L      IVV+ V  +      G+G +       V L  GD+ +  E+++ LV   Y R 
Sbjct: 161 LPPLR--IVVAPVRSVLQPQVAGLGELAP-----VSLAAGDTADLDEVVARLVGMAYHRV 213

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           D+   RG   V G  +++FP   E+   RV  FG+++E+I  F
Sbjct: 214 DLVERRGEIAVRGGILDVFPPT-EEHPLRVEFFGDEVEDIRRF 255


>gi|315660330|ref|ZP_07913183.1| transcription-repair coupling factor [Staphylococcus lugdunensis
           M23590]
 gi|315494619|gb|EFU82961.1| transcription-repair coupling factor [Staphylococcus lugdunensis
           M23590]
          Length = 1173

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 15/183 (8%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L IG  ++   LL  LV   Y+R+ +    G F V G  I+I+P   E V  R+ +F 
Sbjct: 139 IHLHIGQDIDVAHLLQQLVNMGYRRESVVSHIGEFSVRGGIIDIYPLIGEPV--RIELFD 196

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
            +++ I +F   T +   N++ + I + S YV      +  +K+++  LK      +   
Sbjct: 197 TEVDSIRDFDIETQRSNNNLDGVSITSASDYVIT----DDVIKHLQSNLKAAY--EDTRP 250

Query: 415 RLLEAQRLEQRITYD-LEMLETTG-SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           ++  + R + + TY+   +++TT    Q +     ++      E P TL +Y  +D+++ 
Sbjct: 251 KIETSVRNDLKETYESFNLIDTTAVDHQLLRRLVAFMY-----ETPATLIDYFQQDAIVV 305

Query: 473 VDE 475
           VDE
Sbjct: 306 VDE 308


>gi|295104656|emb|CBL02200.1| ATP-dependent DNA helicase RecG [Faecalibacterium prausnitzii
           SL3/3]
          Length = 686

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 6/104 (5%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ED+ + L   + RV  MH ++K  E+  ++ D + G+ D LV   ++  G+D+P   ++ 
Sbjct: 497 EDIAKALLP-DRRVGLMHGKLKPKEKAAVMEDFKAGRLDALVSTTVIEVGVDVPNASVMV 555

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITKSIQ 698
           I +A++ G     ++L Q  GR  R    S   L +D  ++++Q
Sbjct: 556 IENAERYGL----SALHQLRGRVGRGAAESWCFLVSDNTSEAVQ 595


>gi|228995444|ref|ZP_04155114.1| Transcription-repair-coupling factor [Bacillus mycoides Rock3-17]
 gi|228764305|gb|EEM13182.1| Transcription-repair-coupling factor [Bacillus mycoides Rock3-17]
          Length = 1183

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 139/334 (41%), Gaps = 51/334 (15%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +V+  N   A ++Y +  + 
Sbjct: 21  IQSIINGLEEGLKEQLVSGMATSSRSLLMAALYKKTKQSQLVVTHNLFQAQKVYEDLVSL 80

Query: 217 FPHNAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270
                V      E   S      PE    R +                     R  +   
Sbjct: 81  LGEQDVWLYPVNELIASEIGVASPELKAQRIEVL------------------NRLAMGEQ 122

Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             IVV        +   E + Q  +++ +G  ++   LL +L    Y+R+ +    G F 
Sbjct: 123 GIIVVPVAGLRRFLPIKELWKQKQIEISLGQEIDLDVLLHTLHHIGYERKSMVEAPGEFS 182

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + G  ++I+P   E++ +R+  F  +++ I  F         +VE  +       V   P
Sbjct: 183 LRGGILDIYPL-TEELPFRIEFFDTEVDSIRSF---------DVEEQRSQDKRESVKFGP 232

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE---------QRITYDLEMLETTGSCQS 441
              T   + K+ELK+ +  LE EG +   Q+L          + +++++E+L+   + Q+
Sbjct: 233 A--TEFLFSKDELKLGVERLE-EGLMKTMQKLSDDKIKTAVLETVSHEIEILK---NGQT 286

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           IE   +YL+     +   +L +Y+PE+ ++ +DE
Sbjct: 287 IEQMFKYLSIFY--KEHASLIDYLPENGVVILDE 318



 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G    
Sbjct: 867 RVTYAHGKMNESELESVMLSFLDGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL--- 923

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 924 -SQLYQLRGRVGRS 936


>gi|8444|emb|CAA37037.1| unnamed protein product [Drosophila melanogaster]
          Length = 575

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           +T + D+YD     ++   +I++ V TKR  ++L  ++    +R   +H +    ER  +
Sbjct: 373 KTLLSDIYD----TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 428

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R GK ++LV  ++   GLD+   G+  +++ D   + ++    I  IGR  R+ N+
Sbjct: 429 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 482

Query: 685 KVILYA 690
           K   +A
Sbjct: 483 KGTSFA 488


>gi|50293977|ref|XP_449400.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528714|emb|CAG62376.1| unnamed protein product [Candida glabrata]
          Length = 682

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E L  Y  ER I+ + + S+    +R + IRD++ G+ +VL+   +  EG DIP    + 
Sbjct: 287 ECLERYFNERGIKAKAVSSKTSVEDRQKAIRDIKSGELEVLLNCGIFTEGTDIPNIDCIL 346

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +    K     S+T L+Q IGR  R  +SK
Sbjct: 347 LCRPTK-----SRTLLVQMIGRGLRLHHSK 371


>gi|289551698|ref|YP_003472602.1| Transcription-repair coupling factor [Staphylococcus lugdunensis
           HKU09-01]
 gi|289181229|gb|ADC88474.1| Transcription-repair coupling factor [Staphylococcus lugdunensis
           HKU09-01]
          Length = 1173

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 15/183 (8%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L IG  ++   LL  LV   Y+R+ +    G F V G  I+I+P   E V  R+ +F 
Sbjct: 139 IHLHIGQDIDVAHLLQQLVNMGYRRESVVSHIGEFSVRGGIIDIYPLIGEPV--RIELFD 196

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
            +++ I +F   T +   N++ + I + S YV      +  +K+++  LK      +   
Sbjct: 197 TEVDSIRDFDIETQRSNNNLDGVSITSASDYVIT----DDVIKHLQSNLKAAY--EDTRP 250

Query: 415 RLLEAQRLEQRITYD-LEMLETTG-SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           ++  + R + + TY+   +++TT    Q +     ++      E P TL +Y  +D+++ 
Sbjct: 251 KIETSVRNDLKETYESFNLIDTTAVDHQLLRRLVAFMY-----ETPATLIDYFQQDAIVV 305

Query: 473 VDE 475
           VDE
Sbjct: 306 VDE 308


>gi|269125277|ref|YP_003298647.1| transcription-repair coupling factor [Thermomonospora curvata DSM
           43183]
 gi|268310235|gb|ACY96609.1| transcription-repair coupling factor [Thermomonospora curvata DSM
           43183]
          Length = 1168

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 24/214 (11%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A  L +    F   + V +F ++ +    E   PR+DT   + + +     R+ H     
Sbjct: 62  AEDLTAALGCFLDPHRVAHFPAW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPDPDD 116

Query: 266 LLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +      +VV+ V  +      G+G +E      V+L+ GD  + +E++  L    Y+R 
Sbjct: 117 VAAGPLDVVVTPVRAVLQPIVSGLGDLEP-----VRLRTGDEADLEEVVRRLADAGYQRV 171

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG   V G  +++FP   E+   RV  +G+ +EEI  F      K  +  ++++ 
Sbjct: 172 DLVEKRGELAVRGGILDVFPP-TEEHPLRVEFWGDAVEEIRYF------KAADQRSLEVA 224

Query: 381 ANSHYVTP--RPTLNTAMKYIKEELKMRLIELEK 412
            +  +  P     LN A++    EL  R   LE+
Sbjct: 225 QDGLWAPPCRELPLNAAVRQRARELAERHPALEE 258


>gi|228989261|ref|ZP_04149254.1| Transcription-repair-coupling factor [Bacillus pseudomycoides DSM
           12442]
 gi|228770471|gb|EEM19042.1| Transcription-repair-coupling factor [Bacillus pseudomycoides DSM
           12442]
          Length = 1176

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 139/334 (41%), Gaps = 51/334 (15%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +V+  N   A ++Y +  + 
Sbjct: 14  IQSIINGLEEGLKEQLVSGMATSSRSLLMAALYKKTKQSQLVVTHNLFQAQKVYEDLVSL 73

Query: 217 FPHNAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270
                V      E   S      PE    R +                     R  +   
Sbjct: 74  LGEQDVWLYPVNELIASEIGVASPELKAQRIEVL------------------NRLAMGEQ 115

Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             IVV        +   E + Q  +++ +G  ++   LL +L    Y+R+ +    G F 
Sbjct: 116 GIIVVPVAGLRRFLPIKELWKQKQIEISLGQEIDLDVLLHTLHHIGYERKSMVEAPGEFS 175

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + G  ++I+P   E++ +R+  F  +++ I  F         +VE  +       V   P
Sbjct: 176 LRGGILDIYPL-TEELPFRIEFFDTEVDSIRSF---------DVEEQRSQDKRESVKFGP 225

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE---------QRITYDLEMLETTGSCQS 441
              T   + K+ELK+ +  LE EG +   Q+L          + +++++E+L+   + Q+
Sbjct: 226 A--TEFLFSKDELKLGVERLE-EGLMKTMQKLSDDKIKTAVLETVSHEIEILK---NGQT 279

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           IE   +YL+     +   +L +Y+PE+ ++ +DE
Sbjct: 280 IEQMFKYLSIFY--KEHASLIDYLPENGVVILDE 311



 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G    
Sbjct: 860 RVTYAHGKMNESELESVMLSFLDGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL--- 916

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 917 -SQLYQLRGRVGRS 929


>gi|75907174|ref|YP_321470.1| Type III restriction enzyme, res subunit [Anabaena variabilis ATCC
           29413]
 gi|75700899|gb|ABA20575.1| Type III restriction enzyme, res subunit [Anabaena variabilis ATCC
           29413]
          Length = 517

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 16/127 (12%)

Query: 574 EINLAAQQGLRILLTVLTKR--------MAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           EI L     LR+L  +LTK          A++ T Y   +++ +  +  +    ER EI+
Sbjct: 315 EIALGTDSKLRVLANLLTKHYPERVLIFTADNATVYKISQDLLIPAITHQTPVKERHEIL 374

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NV- 682
              R G+++ LV  ++L EG+D+P   +  IL         S    IQ +GR  R  N+ 
Sbjct: 375 TKFREGEYNTLVASHVLNEGVDVPAASIAIILSGTG-----STREYIQRLGRILRKGNIQ 429

Query: 683 NSKVILY 689
           N + ILY
Sbjct: 430 NKQAILY 436


>gi|18466743|ref|NP_569550.1| putative helicase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16506059|emb|CAD09945.1| putative helicase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
          Length = 519

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +  E  +    GL  +  V  KR  + L E + E  ++V +++ E     R   +  L
Sbjct: 355 EAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLNSL 414

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             GK DVL+G  +L  G+D+P  G V +    K     ++  + Q +GR  R
Sbjct: 415 AAGKIDVLIGSTILDVGVDVPSVGAVILGGGGK-----AEVEMRQRVGRGLR 461


>gi|15827885|ref|NP_302148.1| ATP-dependent DNA helicase RecG [Mycobacterium leprae TN]
 gi|13432220|sp|O69460|RECG_MYCLE RecName: Full=ATP-dependent DNA helicase recG
 gi|13093438|emb|CAC30624.1| ATP-dependent DNA helicase [Mycobacterium leprae]
          Length = 743

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N+R+  MH  +   E+   +   R G+ DVLV  N++  G+D+P   ++ ++DAD+ G  
Sbjct: 558 NVRLALMHGRLSADEKDAAMMAFRAGEIDVLVCTNVIEVGVDVPNATIMLVMDADRFGI- 616

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTIT 694
              + L Q  GR  R  +  + L A  ++
Sbjct: 617 ---SQLHQLRGRIGRGTHPSLCLLASWVS 642


>gi|24644481|ref|NP_731031.1| Rm62, isoform D [Drosophila melanogaster]
 gi|281361218|ref|NP_001163528.1| Rm62, isoform H [Drosophila melanogaster]
 gi|23175946|gb|AAN14331.1| Rm62, isoform D [Drosophila melanogaster]
 gi|51092049|gb|AAT94438.1| RE56857p [Drosophila melanogaster]
 gi|272476832|gb|ACZ94826.1| Rm62, isoform H [Drosophila melanogaster]
          Length = 575

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           +T + D+YD     ++   +I++ V TKR  ++L  ++    +R   +H +    ER  +
Sbjct: 373 KTLLSDIYD----TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 428

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R GK ++LV  ++   GLD+   G+  +++ D   + ++    I  IGR  R+ N+
Sbjct: 429 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 482

Query: 685 KVILYA 690
           K   +A
Sbjct: 483 KGTSFA 488


>gi|251771247|gb|EES51828.1| type III restriction enzyme, res subunit [Leptospirillum
           ferrodiazotrophum]
          Length = 950

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 5/106 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +G + +   +++  A  L E+     I   ++  E  + ER EI+R  R G   +L  +
Sbjct: 547 HEGSKTVAFCVSRLHARLLAEFFSREGIAAGHLTGETPSGERREILRKFREGSLSILFVV 606

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +LL EG+DIPE   V +L         S T  +Q IGR  R    K
Sbjct: 607 DLLNEGVDIPEIDRVMLLRPTD-----SPTVFLQQIGRGLRLAPGK 647


>gi|332971077|gb|EGK10047.1| transcription-repair coupling factor [Desmospora sp. 8437]
          Length = 1181

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 133/311 (42%), Gaps = 29/311 (9%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K Q++ G+TGS +   +A +    +RP +++  N   A +   +     P + V  +   
Sbjct: 26  KEQMVAGLTGSARMLYVASLYRETRRPVLLVTHNLNQAQKAVEDLYELLPKDQVLLY--- 82

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
                P   +  T+  ++   ++ E++  +    +R     +   VV        +    
Sbjct: 83  -----PANELVATEIALDGHETLGERVQVL----SRLSKGFSGVFVVPFAGLRKLVPPAH 133

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP---SHLED 345
            +S     LK+G+    + L+  LVK  ++R ++    G F V G  ++IFP   SH   
Sbjct: 134 VFSANHRTLKVGEVYPVESLIDQLVKVGFERVEMVEKPGEFSVRGGILDIFPVTYSHPVR 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           V W    F ++++ I  F     +     + ++I           +L  A   +   L+ 
Sbjct: 194 VEW----FDDEVDSIRPFSVADQRSQTKWDQVEIPPARELFADSDSLYRAGDEVAGLLQE 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY-SRYLTGRNPGEPPPTLFEY 464
           RL ++ K+  L   Q+L ++IT+++E L++      I  Y SR   G +      TL +Y
Sbjct: 250 RLSKV-KDPEL--RQKLTEKITWEIEQLKSGTLFTGIYKYISRIYPGNH------TLLDY 300

Query: 465 IPEDSLLFVDE 475
           + ++++  +DE
Sbjct: 301 LAKETVWVLDE 311



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+   H ++   E  +++ D   G+ DVLV   ++  G+DIP    + I +AD+ G  
Sbjct: 858 DARIAVAHGQMAETELEKVMLDFLDGETDVLVSTTIIETGVDIPNVNTLIIYNADRMGL- 916

Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690
              + L Q  GR  R   S  I YA
Sbjct: 917 ---SQLYQLRGRVGR---SNRIAYA 935


>gi|320534382|ref|ZP_08034868.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133424|gb|EFW25886.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 861

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 2/112 (1%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           LA       ++ V TK  AED+   L  R I+   +  +V   ER  ++  LR G  DVL
Sbjct: 395 LAVTDAEAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVL 454

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  ++   GLD+   GLV   D  +E    +    I   GRA R+  +   L
Sbjct: 455 VATDVAARGLDVDRIGLVVNFDVPRE--AEAYVHRIGRTGRAGRHGEAVTFL 504


>gi|319654684|ref|ZP_08008763.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317393600|gb|EFV74359.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 472

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 9/153 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L  R      +H ++   +RI ++R  + G  DVLV  ++   GLDI  
Sbjct: 230 TKRRVDELAEALNLRGYMAEGIHGDLSQAKRISVLRKFKEGSIDVLVATDVAARGLDI-- 287

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R   + V + + +   KS    ++ TT+R+ 
Sbjct: 288 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKTGVAMTFINPREKSYLHVVERTTKRKM 344

Query: 710 KQLEH---NKKHNINPQSVKEKIMEVIDPILLE 739
           ++++    ++      ++V EKIM+ I+   LE
Sbjct: 345 ERMDAPTLDEALEGQQKAVMEKIMQTIEENNLE 377


>gi|310799184|gb|EFQ34077.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 603

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A+Q+  RIL+  L K+ A  +  +L +R IRV  +H +++  +R   +   + G   VLV
Sbjct: 435 ASQKNDRILVFCLYKKEATRVEAFLQQRGIRVGGIHGDLRQEQRTRSLEAFKAGTTPVLV 494

Query: 638 GINLLREGLDIPECGLV 654
             ++   GLDIPE  LV
Sbjct: 495 ATDVAARGLDIPEVKLV 511


>gi|24644483|ref|NP_731032.1| Rm62, isoform E [Drosophila melanogaster]
 gi|320542448|ref|NP_001189182.1| Rm62, isoform I [Drosophila melanogaster]
 gi|10727150|gb|AAF51927.2| Rm62, isoform E [Drosophila melanogaster]
 gi|257286223|gb|ACV53058.1| LP18603p [Drosophila melanogaster]
 gi|318068719|gb|ADV37273.1| Rm62, isoform I [Drosophila melanogaster]
          Length = 578

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           +T + D+YD     ++   +I++ V TKR  ++L  ++    +R   +H +    ER  +
Sbjct: 376 KTLLSDIYD----TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 431

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R GK ++LV  ++   GLD+   G+  +++ D   + ++    I  IGR  R+ N+
Sbjct: 432 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 485

Query: 685 KVILYA 690
           K   +A
Sbjct: 486 KGTSFA 491


>gi|307244035|ref|ZP_07526154.1| transcription-repair coupling factor [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492559|gb|EFM64593.1| transcription-repair coupling factor [Peptostreptococcus stomatis
           DSM 17678]
          Length = 1134

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 103/219 (47%), Gaps = 38/219 (17%)

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYS------QMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           LL++   I+V+SV  I        Y         I +LK+G S++ ++L   LV   Y+R
Sbjct: 109 LLKKEKIILVTSVEAI-----TRKYVPKKIILDNIFKLKVGQSMDMQDLARKLVDLGYQR 163

Query: 320 QDIGIIRG--TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
             +G + G   F + G  I++F + + +   R+  F ++I+ I EF   + + I   +++
Sbjct: 164 --VGKVEGFGQFSMRGGIIDVF-TLMYNFPLRLEFFDDEIDSIREFDIYSQKSIDKFKSV 220

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I  +  ++ P   +  A++ I+ +L               +   +  +  ++E +    
Sbjct: 221 TITPSRDFIYP-DNVGMAVEKIRADL---------------SDITDSDVFRNIEKIGAKE 264

Query: 438 SCQSIENYSRYL-TGRNPGEPPPTLFEYIPEDSLLFVDE 475
               +ENY  Y+  G++      +LFEY+ +D+L+F+D+
Sbjct: 265 YFDGLENYIDYMYEGQDK-----SLFEYLEDDALIFIDD 298


>gi|313124261|ref|YP_004034520.1| ATP-dependent helicase (dead/deah box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280824|gb|ADQ61543.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 453

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+M ++L +YL ++ ++V  +H  +   ER   +R++R G++  +V  +L   G+D+P 
Sbjct: 253 TKQMVDELADYLTKQGLKVAKIHGGITERERKRTLREVRAGQYQFVVASDLAARGIDLPG 312

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +  KE        +I  IGR  RN
Sbjct: 313 VSLVINYEIPKE-----LEFIIHRIGRTGRN 338


>gi|210632030|ref|ZP_03297170.1| hypothetical protein COLSTE_01063 [Collinsella stercoris DSM 13279]
 gi|210159746|gb|EEA90717.1| hypothetical protein COLSTE_01063 [Collinsella stercoris DSM 13279]
          Length = 1195

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 2/145 (1%)

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQMI 294
           A  P    Y  K +  ++ +   R +A   + +   C++V+S  S +  +    S     
Sbjct: 80  ARFPERKDYPWKNTEPDDAVVAARCAAIARVAQGEPCVMVASARSLLRCVPPASSRYWAS 139

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
              K+G+ +  + +   LV   Y R D   + G FRV GD+++++ +       R+  FG
Sbjct: 140 TTFKVGEEISFERVPELLVGMGYTRADAADMPGLFRVHGDTVDVWAAQ-ATAPVRMEFFG 198

Query: 355 NDIEEISEFYPLTGQKIRNVETIKI 379
           ++I+ I      TGQ I + + ++I
Sbjct: 199 DEIDRIRLMVASTGQTIGDEDAVEI 223


>gi|213962106|ref|ZP_03390370.1| transcription-repair coupling factor [Capnocytophaga sputigena
           Capno]
 gi|213955112|gb|EEB66430.1| transcription-repair coupling factor [Capnocytophaga sputigena
           Capno]
          Length = 1110

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 95/209 (45%), Gaps = 23/209 (11%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           LLK + ++E  ++  G+ G+  +  +  +   + RP +V+ P+K  +A + ++ +     
Sbjct: 17  LLKHLQTKENAEVT-GLAGASLSIVITNLFNTVHRPLLVLLPDKEESAYILNDLETLVGE 75

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN-----EQIDRMRHSATRSLLERNDCIV 274
             V +F        P++Y  R    IE   + N     E ++++ HS T+ LL     IV
Sbjct: 76  QQVLFF--------PDSY--RRPYQIEDTDNANVLLRAEVLNQLSHS-TKPLL-----IV 119

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
               +    + + +   +  ++++ GDS+    L   L    + R D     G F V G 
Sbjct: 120 SYPEALFEKVITRKQLEKNTLKIQKGDSLTIDFLNEVLFSYHFNRTDFVTEPGEFSVRGG 179

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            +++F S   +  +R+  FGN+++ I  F
Sbjct: 180 IVDVF-SFSNNEPYRIEFFGNEVDSIRTF 207


>gi|329945603|ref|ZP_08293336.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528606|gb|EGF55571.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 852

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           LA       ++ V TK  AED+   L  R I+   +  +V   ER  ++  LR G  DVL
Sbjct: 381 LAVTDAEAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVL 440

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLD+   GLV   D  +E       + +  IGR  R
Sbjct: 441 VATDVAARGLDVDRIGLVVNFDVPRE-----AEAYVHRIGRTGR 479


>gi|289706901|ref|ZP_06503239.1| DEAD/DEAH box helicase [Micrococcus luteus SK58]
 gi|289556385|gb|EFD49738.1| DEAD/DEAH box helicase [Micrococcus luteus SK58]
          Length = 827

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER    RDLR G   VL G+++  EGLDIPE   V  L   +     S T  +Q +GR  
Sbjct: 368 ERAAAFRDLRAGTLKVLFGVDVFNEGLDIPEVNTVLFLRPTQ-----SATIFLQQLGRGL 422

Query: 680 RNVNSKVILYA 690
           R   +K +L A
Sbjct: 423 RRSPTKSVLTA 433


>gi|195061826|ref|XP_001996076.1| GH14289 [Drosophila grimshawi]
 gi|193891868|gb|EDV90734.1| GH14289 [Drosophila grimshawi]
          Length = 746

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           ++ + D+YD     ++   +I++ V TKR  ++L  ++    +R   +H +    ER  +
Sbjct: 535 KSLLSDIYD----TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 590

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R GK ++LV  ++   GLD+   G+  +++ D   + ++    I  IGR  R+ N+
Sbjct: 591 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 644

Query: 685 KVILYA 690
           K   +A
Sbjct: 645 KGTSFA 650


>gi|114797135|ref|YP_760687.1| putative ATP-dependent DNA helicase recG [Hyphomonas neptunium ATCC
           15444]
 gi|114737309|gb|ABI75434.1| putative ATP-dependent DNA helicase recG [Hyphomonas neptunium ATCC
           15444]
          Length = 692

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 92/204 (45%), Gaps = 20/204 (9%)

Query: 523 PTTIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSA-RTQVEDVYDEINLA 578
           P  +V+SATP    L Q   G +   I+  +P G    PVE R+   T++EDV + I  A
Sbjct: 415 PHMLVMSATPIPRTLAQAVHGDLDVSILDEKPPG--RKPVETRAVPDTRLEDVIEAIGRA 472

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLY-------ERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            ++G R         + +D +  +        E +++   +H  +K  E+   + D R G
Sbjct: 473 LKRGERAFWVCPRVDIEDDDSSAVVRHAALEEELHVKAGLVHGRLKASEKDAALEDFRTG 532

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILY 689
           +  +LV   ++  G+D+PE  ++ I  A  EGF      L Q  GR  R       ++LY
Sbjct: 533 RTRILVATTVIEVGVDVPEATIMVIERA--EGF--GLAQLHQLRGRVGRGDKPSFCLLLY 588

Query: 690 ADTITKSIQLAIDETTRRREKQLE 713
              +  + +  +D T RR E   E
Sbjct: 589 RPPLGDTARERLD-TLRRTEDGFE 611


>gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
           HB-1]
 gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
           HB-1]
          Length = 417

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 2/103 (1%)

Query: 554 LVDPPVEIRSARTQVEDVYDEIN--LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           L+ P V+ R    + ED    +   L   +G+  ++ V TKR A D+ + L  R I  R 
Sbjct: 210 LITPKVKQRIILVRSEDKIKALEKLLKEHEGVSTIVFVKTKRDAADIEKELQRRGINARA 269

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           +H ++   +R  ++R  R GK  VLV  ++   G+DI + GLV
Sbjct: 270 IHGDLSQRQREFVMRAFREGKVKVLVATDVAARGIDIKDVGLV 312


>gi|24644485|ref|NP_731033.1| Rm62, isoform C [Drosophila melanogaster]
 gi|24644487|ref|NP_731034.1| Rm62, isoform F [Drosophila melanogaster]
 gi|45551833|ref|NP_731035.2| Rm62, isoform B [Drosophila melanogaster]
 gi|10727151|gb|AAG22212.1| Rm62, isoform F [Drosophila melanogaster]
 gi|23175947|gb|AAN14332.1| Rm62, isoform C [Drosophila melanogaster]
 gi|25012758|gb|AAN71471.1| RE68337p [Drosophila melanogaster]
 gi|45446365|gb|AAF51926.2| Rm62, isoform B [Drosophila melanogaster]
 gi|220950572|gb|ACL87829.1| Rm62-PB [synthetic construct]
          Length = 578

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           +T + D+YD     ++   +I++ V TKR  ++L  ++    +R   +H +    ER  +
Sbjct: 376 KTLLSDIYD----TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 431

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R GK ++LV  ++   GLD+   G+  +++ D   + ++    I  IGR  R+ N+
Sbjct: 432 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 485

Query: 685 KVILYA 690
           K   +A
Sbjct: 486 KGTSFA 491


>gi|295148218|ref|NP_001171151.1| Fanconi anemia, complementation group M [Xenopus laevis]
 gi|223929916|gb|ACN24616.1| Fanconi anemia protein [Xenopus laevis]
          Length = 2166

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 16/119 (13%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM----HSE----VKTL---ERIEIIRDLR 629
           +G RI++    +   +++ E L   +  VR M    HS     VK     E++E+++  R
Sbjct: 582 EGTRIMIFSSFRDSVQEIAEMLNHHHPTVRVMTFVGHSSAGKGVKGFTQKEQLEVVKRFR 641

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G F+ LV   +  EGLDI E  L+   DA K     S   L+Q +GR  R    ++++
Sbjct: 642 EGGFNTLVSTCVGEEGLDIGEVDLIICFDAQK-----SPIRLVQRMGRTGRKRQGRIVV 695


>gi|166714758|gb|ABY88093.1| UvrB [Stenotrophomonas sp. LMG 10851]
          Length = 60

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 35/54 (64%)

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
           I++FP+  +  A R+ +F  ++E+I+ F PLTG+ +RN+    +Y  +HY T R
Sbjct: 2   IDVFPADRDSEALRIELFDGEVEKITLFDPLTGETMRNLMRFTVYPKTHYATTR 55


>gi|227496195|ref|ZP_03926501.1| superfamily II helicase [Actinomyces urogenitalis DSM 15434]
 gi|226834278|gb|EEH66661.1| superfamily II helicase [Actinomyces urogenitalis DSM 15434]
          Length = 762

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 2/112 (1%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           LA  +    ++ V TK  AED+   L  R I+   +  +V   ER  ++  LR G  DVL
Sbjct: 356 LATTEAEAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRSGTLDVL 415

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  ++   GLD+   GLV   D  +E    +    I   GRA R+  +   L
Sbjct: 416 VATDVAARGLDVDRIGLVVNFDVPREA--EAYVHRIGRTGRAGRHGEAVTFL 465


>gi|66820759|ref|XP_643949.1| hypothetical protein DDB_G0274325 [Dictyostelium discoideum AX4]
 gi|74927179|sp|Q86IZ9|DDX52_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx52; AltName:
           Full=DEAD box protein 52
 gi|60472102|gb|EAL70055.1| hypothetical protein DDB_G0274325 [Dictyostelium discoideum AX4]
          Length = 668

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 9/119 (7%)

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           Q+GL   IL+   +K  A DL + L    I V  +HSE    +R  I++  R+GK  VL+
Sbjct: 436 QKGLEPPILIFTQSKERAHDLFQELIFDGINVDVIHSERTQFQRDTIVKKFRMGKIWVLI 495

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV--ILYADTIT 694
              L+  G+D      V   D     F  +  S I  IGR  R     V   LY D  T
Sbjct: 496 CTELMARGMDFKGVNFVINFD-----FPHTLASYIHRIGRTGRAGRPGVAYTLYTDADT 549


>gi|322412921|gb|EFY03828.1| putative transcription-repair coupling factor [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 1166

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 98/216 (45%), Gaps = 12/216 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G++GS K   MA      Q   +VM   +    +L S+  +      V  F  + D
Sbjct: 26  QLVMGLSGSSKALAMASAFLDSQEKIVVMTSTQNEVEKLASDLSSLLGEELVYQF--FAD 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                 ++  +   ++K  S  E +  + +   R +L     + +S +  +  + + + +
Sbjct: 84  DVAAAEFIFAS---MDKALSRIEALQFLINPKARGIL----IVSLSGLRTL--LPNPDVF 134

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           ++  ++LK+G+  +   L   L+   Y+     I  G F   GD ++I+    +++ +R+
Sbjct: 135 AKSHIKLKVGEDYDSDALTKQLMTIGYQNVSQVISPGEFSRRGDILDIY-EMTQELPYRL 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
             FG+DI+ I  F+P T +    +E + I+  S  +
Sbjct: 194 EFFGDDIDGIRHFHPETQKSFEQLEELLIHPASELI 229


>gi|266619807|ref|ZP_06112742.1| transcription-repair coupling factor [Clostridium hathewayi DSM
           13479]
 gi|288868593|gb|EFD00892.1| transcription-repair coupling factor [Clostridium hathewayi DSM
           13479]
          Length = 1178

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 122/281 (43%), Gaps = 23/281 (8%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  +   A ++Y +F+NF P       VS Y         P  D            + 
Sbjct: 54  LVVTYDDTRAREIYEDFRNFEPG------VSLY---------PARDLLFFNADIHGNLLT 98

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           + R +  R L+E    +VV++   +   +  +    + I++++ G +++  E    LV+ 
Sbjct: 99  KQRMAVFRRLMEEKSGVVVTTFDGLMDHLLPLSFLQKQILEVESGQTLDIAEWKEKLVEL 158

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y+R       G F + G  I++FP   E++  R+ ++ ++++ I  F   + + I  +E
Sbjct: 159 GYERVAQVDGMGQFSIRGGIIDVFPL-TEELPVRIELWDDEVDSIRTFDIESQRSIEELE 217

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + +Y  +  V  +  +    + I++E K    EL  + +  EA R+   ++  L+ L  
Sbjct: 218 RVLVYPATEMVLTKQQITDGREAIEKEAKKYEKELRNQLKTEEAARIHSIVSELLDGLRE 277

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED-SLLFVDE 475
                 ++ Y  Y           +  +Y PED +++++DE
Sbjct: 278 GWKQHGLDGYIHYFC-----RDSVSFLDYFPEDNTVIYLDE 313



 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V + H ++   E   I+ D   G+ DVLV   ++  GLDIP    + I DAD+ G     
Sbjct: 868 VTFAHGQMHEHELERIMFDFVNGEIDVLVCTTIIETGLDIPNANTMIIQDADRMGL---- 923

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
           + L Q  GR  R+  +    YA  + K  ++  +E  +R
Sbjct: 924 SQLYQLRGRVGRSSRTS---YAFLMYKRDKMLREEAEKR 959


>gi|294934696|ref|XP_002781195.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239891530|gb|EER12990.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 584

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 3/145 (2%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+ S   + +  +D +     +G RI++   TK+ A+ LT  +   N     +H + + 
Sbjct: 398 VEVVSEMDKRQMFFDWLKETYPKGSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQ 457

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER  I+ D + G+ +VLV  ++ + GLDI     V   D  K   +      I   GRA
Sbjct: 458 RERDRILNDFKTGRCNVLVATDVAQRGLDIKNVEWVVNYDMPKT--VEDYVHRIGRTGRA 515

Query: 679 ARNVNSKVILYADTITKS-IQLAID 702
               NS   +  DT T   +++A D
Sbjct: 516 GAVGNSLTFITNDTHTPDRVRMAKD 540


>gi|66825831|ref|XP_646270.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|74897412|sp|Q55D61|IF4A_DICDI RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=ATP-dependent RNA helicase tifA
 gi|60474009|gb|EAL71946.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 405

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + LTE + + N  V  MH ++   ER EII+  R
Sbjct: 264 DIYDSLTIT-----QAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFR 318

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++L  G+D+ +  LV   D   D+E +       I  IGR+ R
Sbjct: 319 SGENRVLITTDILARGIDVQQVSLVINYDLPIDRENY-------IHRIGRSGR 364


>gi|269963891|ref|ZP_06178203.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831378|gb|EEZ85525.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 551

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++ A D+TE   +  I+  Y+   +   ER + ++ L  GK  V+V +N+L EG D   
Sbjct: 233 TRKHAIDVTEAFQKAGIKCDYIDGVMSERERKKRLKALDTGKLQVIVNVNVLTEGFDSQP 292

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
              V +L         SK+SLIQ +GR  R ++
Sbjct: 293 ISCVILLRGSS-----SKSSLIQMVGRGLRKLD 320


>gi|255726050|ref|XP_002547951.1| ATP-dependent RNA helicase ded1 [Candida tropicalis MYA-3404]
 gi|240133875|gb|EER33430.1| ATP-dependent RNA helicase ded1 [Candida tropicalis MYA-3404]
          Length = 665

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A + GL I+ T  TKRMA+ L ++LY++      +H +    ER + +   + G   +LV
Sbjct: 440 ANENGLTIVFTE-TKRMADQLADFLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILV 498

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              +   GLDIP  G V   D   +         +  IGR  R  N  +
Sbjct: 499 ATAVAARGLDIPNVGHVINFDLPSD-----IDDYVHRIGRTGRAGNVGI 542


>gi|297199959|ref|ZP_06917356.1| ATP-dependent helicase [Streptomyces sviceus ATCC 29083]
 gi|297147542|gb|EDY54463.2| ATP-dependent helicase [Streptomyces sviceus ATCC 29083]
          Length = 971

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           AR  ++ V D++  +    +R L   +T++ A  + +   E  I+   + SE K   R  
Sbjct: 470 ARIVIKQVRDKV--SDPTNMRALGFCVTRKHAHFMAKCFQEAGIKAAALDSESKPEIRER 527

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           I+ +L+ G+  V+  ++L  EGLDIP+   + +L         S T  +Q +GR  R   
Sbjct: 528 ILAELKAGELQVIFSVDLFNEGLDIPDVDTLLLLRPTN-----SATVFLQQLGRGLRRTP 582

Query: 684 SKVIL 688
            K +L
Sbjct: 583 DKPVL 587


>gi|288799847|ref|ZP_06405306.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288333095|gb|EFC71574.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 445

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 21/149 (14%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++    K   +D+ + L  + I    MHS++   ER E++   + G+ DVLV  +++ 
Sbjct: 229 RVIIFSGKKDKVKDINKALLSKKINSGAMHSDLSQAERDEVMFKFKAGQIDVLVATDIVS 288

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            G+DI +  +V   D   D E +       I  IGR AR         AD   K+I L  
Sbjct: 289 RGIDIDDIRMVINYDVPHDVEDY-------IHRIGRTAR---------ADRDGKAITLVS 332

Query: 702 DETT---RRREKQLEHNKKHNINPQSVKE 727
           DE     ++ E+ LE       NP ++ E
Sbjct: 333 DEDMFYFQQIEQFLEKTIDKTPNPDNIGE 361


>gi|229820496|ref|YP_002882022.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
 gi|229566409|gb|ACQ80260.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
           12333]
          Length = 589

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 2/103 (1%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+  AE++   L  R I    +  +V   ER  I+  LR G  DVLV  ++   G
Sbjct: 263 IVFVRTRETAEEVGTALASRGINAASISGDVAQRERERIVERLRSGALDVLVATDVAARG 322

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           LD+   GLV   D  +E  + +    I   GRA R  N+   L
Sbjct: 323 LDVERIGLVVNFDVPRE--VETYVHRIGRTGRAGRTGNALTFL 363


>gi|321477029|gb|EFX87988.1| hypothetical protein DAPPUDRAFT_311480 [Daphnia pulex]
          Length = 711

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 5/65 (7%)

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++  + + +I+RD R G  ++LV  ++L EG+DIPEC L+   D      +R+    +Q
Sbjct: 455 SQILNMNQKDIMRDFRSGNCNLLVATSVLEEGVDIPECNLIVRFDK-----IRTYCDYVQ 509

Query: 674 TIGRA 678
           T GRA
Sbjct: 510 TKGRA 514


>gi|292657118|ref|YP_003537015.1| ATP-dependent RNA helicase/nuclease Hef [Haloferax volcanii DS2]
 gi|291371263|gb|ADE03490.1| ATP-dependent RNA helicase/nuclease Hef [Haloferax volcanii DS2]
          Length = 858

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 16/146 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-------HSEVKTLERIEIIRDLR 629
           L  Q G R+++   ++  AE LTE+L E     R++          +   E+ E +   R
Sbjct: 366 LGIQNGERVIVFTESRDTAEALTEFLSESFSVRRFVGQGDREGSDGMTQNEQQETLDKFR 425

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G+F+VLV  ++  EGLD+PE  LV   +      + +    IQ  GR  R  + + V+L
Sbjct: 426 NGEFEVLVSTSVAEEGLDVPEVDLVLFFEP-----VPTAIRSIQRKGRTGRQADGRVVVL 480

Query: 689 YADTITKSIQLAIDETTRRREKQLEH 714
            A+         I   +RRREK +++
Sbjct: 481 LAEDTRDEAYFWI---SRRREKTMQN 503


>gi|254570837|ref|XP_002492528.1| Putative protein of unknown function [Pichia pastoris GS115]
 gi|238032326|emb|CAY70349.1| Putative protein of unknown function [Pichia pastoris GS115]
 gi|328353460|emb|CCA39858.1| hypothetical protein PP7435_Chr3-0907 [Pichia pastoris CBS 7435]
          Length = 682

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L   + K+  +DL E      I+  ++      LER +II++   GK +VL+  N+  EG
Sbjct: 315 LFFCVNKQHVQDLCELFCANGIKAGFVSGNTPLLEREQIIKNFIDGKLNVLMNCNVFTEG 374

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            DIP    + +L   K     S+  L Q IGR  R  + K   Y      +    I+
Sbjct: 375 TDIPNIDSIFLLRPTK-----SRPLLSQMIGRGLRLHSGKTKCYVTDFVGTTHSGIN 426


>gi|323934327|gb|EGB30747.1| DEAD/DEAH box helicase [Escherichia coli E1520]
          Length = 519

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +  E  L  Q  L  +  V  KR  + L E + E  +RV +++ E     R   +  L
Sbjct: 355 EAIVREALLYKQHSLNCMTLVRLKRHGQILMEMMKESGLRVDFIYGESNQTTRQAKLNSL 414

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             G+ DVL+G  +L  G+D+P  G V +    K     ++  + Q +GR  R
Sbjct: 415 ASGEIDVLIGSTILDVGVDVPSVGAVILAGGGK-----AEVEMRQRVGRGLR 461


>gi|195125432|ref|XP_002007182.1| GI12524 [Drosophila mojavensis]
 gi|193918791|gb|EDW17658.1| GI12524 [Drosophila mojavensis]
          Length = 602

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 16/153 (10%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD+  +      +I++ V TK+  ++L  ++    + V  +H +   ++R  ++ D R 
Sbjct: 351 IYDQSGMPG----KIIIFVATKKKVDELARFINAFGVGVGSIHGDKSQMDRDNVLNDFRS 406

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+ ++LV  ++   GLD+   G+  +++ D   F +S    I  IGR  R  +S    YA
Sbjct: 407 GRANILVATDVAARGLDVD--GIKYVINFD---FPQSSEDYIHRIGRTGRK-HSTGTSYA 460

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
               K+ + A      R   ++      NINP+
Sbjct: 461 FFTRKNAKCA------RALIEILREANQNINPE 487


>gi|315928208|gb|EFV07525.1| type III restriction enzyme, res subunit family [Campylobacter
           jejuni subsp. jejuni DFVF1099]
 gi|315929755|gb|EFV08925.1| type III restriction enzyme, res subunit family [Campylobacter
           jejuni subsp. jejuni 305]
          Length = 313

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186
           ++I N  KD+ F         + DQ  A+  + K +HS+E K ++++G  G GKT  +  
Sbjct: 213 FNIANWLKDLPF-------SLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLG 265

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
             +    + AI+MAP  ILA QLY E K F P
Sbjct: 266 AALMVYPKQAILMAPTSILAYQLYEEAKKFLP 297


>gi|260903903|ref|ZP_05912225.1| DEAD/DEAH box helicase domain-containing protein [Brevibacterium
           linens BL2]
          Length = 606

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 13/165 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TK+  E+L E L  R  +   ++ ++    R   I  LR GK D+LV  ++   
Sbjct: 258 IIMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDILVATDVAAR 317

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+    LV   D   D E ++      I   GRA R  + + IL+     + +  +I+
Sbjct: 318 GLDVERITLVVNFDIPHDTESYVHR----IGRTGRAGR--SGEAILFVTPREQRLLGSIE 371

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
             T+++ +QL+      +    V EK  + ID +L    ATT ++
Sbjct: 372 RATKQKVEQLKMPSVEELTNTRV-EKFTKRIDDVL----ATTELT 411


>gi|325685734|gb|EGD27812.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 453

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+M ++L +YL ++ ++V  +H  +   ER   +R++R G++  +V  +L   G+D+P 
Sbjct: 253 TKQMVDELADYLTKQGLKVAKIHGGITERERKRTLREVRAGQYQYVVASDLAARGIDLPG 312

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +  KE        +I  IGR  RN
Sbjct: 313 VSLVINYEIPKE-----LEFIIHRIGRTGRN 338


>gi|313894846|ref|ZP_07828406.1| transcription-repair coupling factor [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312976527|gb|EFR41982.1| transcription-repair coupling factor [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 1094

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 21/210 (10%)

Query: 175 GVTGSGKTFTMAKVIEAMQRP-AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           G  GS K   +A   +   RP AIV A  + L A    +     P           D Y+
Sbjct: 32  GCAGSLKHAAVAAAYDGTPRPLAIVTAGRESLRA-WQEDLTALLPEA---------DVYE 81

Query: 234 PEAYVPRTDTYIEKESSINEQIDRM--RHSATRSLLERNDCIVVSSVSCIYGIG-SVESY 290
               +P  D  +       + ++R   R +    LL R   IV++ +      G S   +
Sbjct: 82  ----LPELDYALAAVQGAAKGMERAAQRMNILGRLLRREPIIVLADIGAAAQKGLSAAEF 137

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDVAWR 349
           S+  + L++GD++ ++ELL+ +V   Y+        G F V G  ++IFP + L  +  R
Sbjct: 138 SRASLSLRLGDTLVREELLARMVGMGYEHAAEVEHVGQFSVRGGIVDIFPINALSPI--R 195

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           +  F  +I+ + E+  +T + I+N+ T  I
Sbjct: 196 IEFFDAEIDSMREYDAVTRRSIKNISTASI 225



 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 23/135 (17%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM E L   + E  I   +       LE  +++ D   G +D+L+  +++  G+D+    
Sbjct: 776 RMREHLLRLVPEARIATAHGQMNEDILE--QVMMDFYEGHYDILLATSIIENGIDVANAN 833

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
            V I DAD+ G     + L Q  GR  R               S ++A    T RR+K L
Sbjct: 834 TVIIYDADRFGL----SQLYQMRGRVGR---------------SAKMAFAYFTYRRDKVL 874

Query: 713 EHNKKHNINPQSVKE 727
               +  +  Q++KE
Sbjct: 875 SETAEKRL--QAMKE 887


>gi|61657395|emb|CAI44311.1| primosomal protein N [Thermotoga petrophila]
 gi|61657527|emb|CAI44438.1| primosomal protein N [Thermotoga sp. RQ2]
          Length = 748

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGL 646
           T  T+R+  +L  Y   R I  R     V  +  +E  I  L  G+ D+LVG  L+ + L
Sbjct: 515 TAGTERVERELKRYFPTRRI-ARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSL 573

Query: 647 DIPECGLVAILDADKEGF-------LRSKTSLIQTIGRAARNVNSKVIL 688
            +PE GLV I+D D   F       LR+   ++Q +GRA+R    K I+
Sbjct: 574 SVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAII 622


>gi|320547719|ref|ZP_08042004.1| transcription-repair coupling factor [Streptococcus equinus ATCC
           9812]
 gi|320447794|gb|EFW88552.1| transcription-repair coupling factor [Streptococcus equinus ATCC
           9812]
          Length = 1165

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/305 (19%), Positives = 128/305 (41%), Gaps = 29/305 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G++G+ K   +A   +A +   +V+   +    +L S+       + V  F +  D
Sbjct: 26  QLIMGLSGASKALAIASAYQANEEKIVVLTSTQHEVEKLASDLSGLIGEDKVYTFFA--D 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                 ++  +   ++K  S  E ++ ++ +    +L      + S V     + + ++Y
Sbjct: 84  DVAAAEFIFAS---MDKAHSRLEALNFLQDTTQTGIL------ITSLVGTRVLLPNPKAY 134

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           ++  ++  +G+     +++  L    YK+    +  G F   GD ++I+     D  +R+
Sbjct: 135 AESQLKFVVGEDYNLDKVVKVLSNVGYKKVSQALNPGEFSRRGDIVDIYEV-TADYPYRL 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             FG++++ I EF   T + + NV+ + IY     +        A    +          
Sbjct: 194 EFFGDEVDGIREFDAETQKSLSNVDQVTIYPADELILSEEDFTRASTAFE---------- 243

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
               + LE  +  Q   Y  E+  TT      ++  R+L+     E   TL +YIP+ + 
Sbjct: 244 ----KYLETAKDAQH-AYLSELYATTQEHYRHQDIRRFLSLFYAKE--WTLLDYIPKGTP 296

Query: 471 LFVDE 475
           +F D+
Sbjct: 297 VFFDD 301


>gi|298373454|ref|ZP_06983443.1| transcription-repair coupling factor [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274506|gb|EFI16058.1| transcription-repair coupling factor [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 1109

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 29/219 (13%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G+  S ++  +A+++    +  +++A +   A   Y +      +  V +F ++Y + 
Sbjct: 33  LQGLRASAQSVAIAEMLRHTDKNILLVADDGDGAGYAYFDIVQLLGNERVAFFPAFYKHN 92

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS--------SVSCIYGI 284
                           ++I E  + +R  +   +  +N CI+VS         V+  Y +
Sbjct: 93  HKSG------------ATIAEN-EILRTDSLNKISGKNPCIIVSYPEALVEKVVASSYFV 139

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
           GS        ++L+ G S +   L+  L K  ++  D     G +   G  ++IF S+  
Sbjct: 140 GSK-------IELRKGQSYDMNSLVGQLQKAGFEEVDFVYEVGQYSQRGSIVDIF-SYSN 191

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
           ++ +RV  FG++IE I  F       + +V++I I AN+
Sbjct: 192 ELPYRVDFFGDNIESIRMFDIERQLSVSSVDSIDIVANT 230


>gi|227513680|ref|ZP_03943729.1| ATP-dependent DNA helicase/translocase [Lactobacillus buchneri ATCC
           11577]
 gi|227083091|gb|EEI18403.1| ATP-dependent DNA helicase/translocase [Lactobacillus buchneri ATCC
           11577]
          Length = 442

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 8/134 (5%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + +   IN   +Q  R LL V   +    ++  L + NI   Y+       +R+E +  +
Sbjct: 296 KSILQMINRLVKQKQRFLLFVPRIKDLTLVSNALEKANINCTYLTVYSADPQRLEKVTAM 355

Query: 629 RLGKFDVLVGINLLREGLDIPECGL-VAILDADKEGFLRSKTSLIQTIGRAARNV---NS 684
           R    D L+   +L  G+  P  G+ V +L AD E F  S ++L+Q  GR  RN      
Sbjct: 356 RSQSVDFLITTTILERGVTFP--GIDVMVLKADDEVF--STSALVQIAGRVGRNSARPTG 411

Query: 685 KVILYADTITKSIQ 698
           +VILY +T +K+I+
Sbjct: 412 QVILYCETKSKTIK 425


>gi|15642952|ref|NP_227993.1| primosomal protein N' [Thermotoga maritima MSB8]
 gi|8928309|sp|Q9WY22|PRIA_THEMA RecName: Full=Primosomal protein N'; AltName: Full=ATP-dependent
           helicase priA; AltName: Full=Replication factor Y
 gi|4980673|gb|AAD35271.1|AE001702_11 primosomal protein N' [Thermotoga maritima MSB8]
          Length = 736

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGL 646
           T  T+R+  +L  Y   R I  R     V  +  +E  I  L  G+ D+LVG  L+ + L
Sbjct: 503 TAGTERVERELKRYFPTRRI-ARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSL 561

Query: 647 DIPECGLVAILDADKEGF-------LRSKTSLIQTIGRAARNVNSKVIL 688
            +PE GLV I+D D   F       LR+   ++Q +GRA+R    K I+
Sbjct: 562 SVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAII 610


>gi|313217515|emb|CBY38596.1| unnamed protein product [Oikopleura dioica]
 gi|313229431|emb|CBY24018.1| unnamed protein product [Oikopleura dioica]
          Length = 401

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + L E + E N  V  MH ++   ER EI+R+ R
Sbjct: 260 DLYDTLTIT-----QAVIFCSTKRKVDWLAEKMREANFTVSAMHGDMPQKERNEIMREFR 314

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 315 SGQTRVLISTDVWARGLDVPQVSLIINYDLPN-----NRELYIHRIGRSGR 360


>gi|195453112|ref|XP_002073643.1| GK14214 [Drosophila willistoni]
 gi|194169728|gb|EDW84629.1| GK14214 [Drosophila willistoni]
          Length = 745

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           ++ + D+YD     ++   +I++ V TKR  ++L  ++    +R   +H +    ER  +
Sbjct: 540 KSLLSDIYD----TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 595

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R GK ++LV  ++   GLD+   G+  +++ D   + ++    I  IGR  R+ N+
Sbjct: 596 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 649

Query: 685 KVILYA 690
           K   +A
Sbjct: 650 KGTSFA 655


>gi|322696830|gb|EFY88617.1| ATP-dependent RNA helicase dbp3 [Metarhizium acridum CQMa 102]
          Length = 591

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q+  RIL+  L K+ A  +  +L  + IRV  +H ++K  +R   +   + G+  VLV  
Sbjct: 425 QKNDRILVFCLYKKEATRVENFLSRKGIRVGGIHGDLKQEQRTRSLEAFKTGQTPVLVAT 484

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           ++   GLDIPE  LV  +      F  +    +  IGR  R  N+
Sbjct: 485 DVAARGLDIPEVKLVINVT-----FPLTIEDYVHRIGRTGRAGNT 524


>gi|326773277|ref|ZP_08232560.1| cold-shock DEAD box protein A [Actinomyces viscosus C505]
 gi|326636507|gb|EGE37410.1| cold-shock DEAD box protein A [Actinomyces viscosus C505]
          Length = 865

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           LA       ++ V TK  AED+   L  R I+   +  +V   ER  ++  LR G  DVL
Sbjct: 396 LAVTDAEAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVL 455

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLD+   GLV   D  +E       + +  IGR  R
Sbjct: 456 VATDVAARGLDVDRIGLVVNFDVPRE-----AEAYVHRIGRTGR 494


>gi|145603330|ref|XP_369345.2| hypothetical protein MGG_06119 [Magnaporthe oryzae 70-15]
 gi|145011584|gb|EDJ96240.1| hypothetical protein MGG_06119 [Magnaporthe oryzae 70-15]
          Length = 643

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LT+   E  I  R++  +   +ER E + + R GKF VLV   +  EG DIP    V + 
Sbjct: 285 LTQKFREFGIDARFVTGDTHKVERSERLEEFRAGKFPVLVNCGVFTEGTDIPNIDCVVLA 344

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
              K     S+  L+Q IGR  R
Sbjct: 345 RPTK-----SRNLLVQMIGRGMR 362


>gi|195399942|ref|XP_002058578.1| GJ14499 [Drosophila virilis]
 gi|194142138|gb|EDW58546.1| GJ14499 [Drosophila virilis]
          Length = 733

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           ++ + D+YD     ++   +I++ V TKR  ++L  ++    +R   +H +    ER  +
Sbjct: 518 KSLLSDIYD----TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 573

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R GK ++LV  ++   GLD+   G+  +++ D   + ++    I  IGR  R+ N+
Sbjct: 574 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 627

Query: 685 KVILYA 690
           K   +A
Sbjct: 628 KGTSFA 633


>gi|18976498|ref|NP_577855.1| DNA repair protein rad25 [Pyrococcus furiosus DSM 3638]
 gi|18892045|gb|AAL80250.1| DNA repair protein rad25 [Pyrococcus furiosus DSM 3638]
          Length = 444

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 8/102 (7%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++G R+L+ V      E L + L ER I+  ++ S+  +  R EI+   + G+  VLV 
Sbjct: 311 VRRGHRVLIDVKRIDHGEMLAKMLKERGIKAEFLSSQ--SPNRWEILEKYKKGEIQVLVS 368

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LL+EG+DIPE   + +    K     S    IQTIGRA R
Sbjct: 369 -TLLKEGVDIPEISAIILAGGGK-----SDIMTIQTIGRALR 404


>gi|307824309|ref|ZP_07654535.1| ATP-dependent DNA helicase RecG [Methylobacter tundripaludum SV96]
 gi|307734689|gb|EFO05540.1| ATP-dependent DNA helicase RecG [Methylobacter tundripaludum SV96]
          Length = 699

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 12/118 (10%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            ++ AE LTE L   N+RV  +H  +K+ E+  +++D +  + D+LV   ++  G+D+P 
Sbjct: 510 AEKTAETLTEAL--PNVRVALIHGRMKSAEKDAVMQDFKNHRIDLLVATTVIEVGVDVPN 567

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
            GL+ I + ++ G     + L Q  GR  R  +    L         Q  + +T R R
Sbjct: 568 AGLMIIENPERLGL----SQLHQLRGRVGRGGDDSYCLLM------YQAPLSDTARHR 615


>gi|257439260|ref|ZP_05615015.1| ATP-dependent DNA helicase RecG [Faecalibacterium prausnitzii
           A2-165]
 gi|257198302|gb|EEU96586.1| ATP-dependent DNA helicase RecG [Faecalibacterium prausnitzii
           A2-165]
          Length = 698

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 6/104 (5%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ED+ + L   + RV  MH ++K  E+  ++ D + G+ D LV   ++  G+D+P   ++ 
Sbjct: 509 EDIAKALLP-DRRVGLMHGKLKPKEKAAVMDDFKAGRLDALVSTTVIEVGVDVPNATVMV 567

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITKSIQ 698
           I +A++ G     ++L Q  GR  R    S   L +D   +S+Q
Sbjct: 568 IENAERYGL----SALHQLRGRVGRGAAESWCFLVSDNTAESVQ 607


>gi|262201520|ref|YP_003272728.1| transcription-repair coupling factor [Gordonia bronchialis DSM
           43247]
 gi|262084867|gb|ACY20835.1| transcription-repair coupling factor [Gordonia bronchialis DSM
           43247]
          Length = 1195

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 23/210 (10%)

Query: 161 LKGIHSR-EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           + GI +R ++V + L    + + F +A + +    P +V++ N   A  L +E       
Sbjct: 20  ISGIRARRDEVHVDLTAPDAARPFVVACLAKDADAPLLVVSANGREADDLTAELAELLDE 79

Query: 220 -NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
            +AV  F S+ +    E   P  DT   + + ++    R+ +     L      +VV++V
Sbjct: 80  PDAVAQFPSW-ETLPHERLSPSADTVGARLAVLH----RLANPGDSPLR-----VVVTTV 129

Query: 279 SCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
             +      G+G V + S     L  G  ++   LL+ LV+  Y+R D+   RG F V G
Sbjct: 130 RSLVQPMAPGLGDVATIS-----LAEGFEIDFDGLLTDLVEMAYERVDMVGRRGEFAVRG 184

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
             +++FP+   D   RV  +G++I E+  F
Sbjct: 185 GILDVFPT-TADYPVRVEFWGDEITEMRAF 213


>gi|198452778|ref|XP_001358938.2| GA10214 [Drosophila pseudoobscura pseudoobscura]
 gi|198132073|gb|EAL28081.2| GA10214 [Drosophila pseudoobscura pseudoobscura]
          Length = 738

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           ++ + D+YD     ++   +I++ V TKR  ++L  ++    +R   +H +    ER  +
Sbjct: 532 KSLLSDIYD----TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 587

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R GK ++LV  ++   GLD+   G+  +++ D   + ++    I  IGR  R+ N+
Sbjct: 588 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 641

Query: 685 KVILYA 690
           K   +A
Sbjct: 642 KGTSFA 647


>gi|121945880|dbj|BAF44659.1| RNA helicase [Neobenedenia girellae]
          Length = 670

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 11/131 (8%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V+ R+A     D   E NL        L+ V TKR A+ L E+LY R   V  +H +   
Sbjct: 430 VDKRNALLDFIDFTKEDNLT-------LVFVETKRGADSLEEFLYNREFSVSSIHGDRTQ 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQT 674
            ER   +++ R GK  ++V   +   GLDIP    V   D   D + ++    +T  +  
Sbjct: 483 DERERALKNFRSGKTPIMVATAVAARGLDIPNVKHVINYDLPNDIDEYVHRIGRTGRVGN 542

Query: 675 IGRAARNVNSK 685
           +G+A    N K
Sbjct: 543 LGKATSFFNDK 553


>gi|325923075|ref|ZP_08184770.1| helicase family protein with metal-binding cysteine cluster
           [Xanthomonas gardneri ATCC 19865]
 gi|325546467|gb|EGD17626.1| helicase family protein with metal-binding cysteine cluster
           [Xanthomonas gardneri ATCC 19865]
          Length = 831

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 81/182 (44%), Gaps = 33/182 (18%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565
           P  I+ SAT G+      Q +I EQ+        PTG     L +PPV      +R SAR
Sbjct: 239 PQFILCSATIGN-PHAHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618
           +Q   +     +A + GL+ L+   T+ M E LT+YL +       +  R+R        
Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDNDPRKPPRIRAYRGGYLP 354

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER E+ R +R G  D +V  + L  G+DI    +V +      G+  S  +  Q  GRA
Sbjct: 355 TERREVERAMRAGNIDGIVSTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 409

Query: 679 AR 680
            R
Sbjct: 410 GR 411


>gi|223044305|ref|ZP_03614340.1| phage deah-family helicase [Staphylococcus capitis SK14]
 gi|222442273|gb|EEE48383.1| phage deah-family helicase [Staphylococcus capitis SK14]
          Length = 445

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 5/100 (5%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +GL+ ++       ++ + E    +     ++    KT ER+E+++  R G+ D+L    
Sbjct: 215 KGLKTIVYAYNVESSKRVAEQFKNKGYNAYHLDGNAKTHERLEVVQKFRDGEIDILTNAE 274

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           L  EG DIP+C  V +L   +     S +  IQ   RA R
Sbjct: 275 LFGEGFDIPDCHCVILLRPTE-----SLSLFIQQTMRAMR 309


>gi|148269882|ref|YP_001244342.1| primosomal protein N' [Thermotoga petrophila RKU-1]
 gi|170288567|ref|YP_001738805.1| primosomal protein N' [Thermotoga sp. RQ2]
 gi|147735426|gb|ABQ46766.1| replication restart DNA helicase PriA [Thermotoga petrophila RKU-1]
 gi|170176070|gb|ACB09122.1| primosomal protein N' [Thermotoga sp. RQ2]
          Length = 736

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGL 646
           T  T+R+  +L  Y   R I  R     V  +  +E  I  L  G+ D+LVG  L+ + L
Sbjct: 503 TAGTERVERELKRYFPTRRI-ARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSL 561

Query: 647 DIPECGLVAILDADKEGF-------LRSKTSLIQTIGRAARNVNSKVIL 688
            +PE GLV I+D D   F       LR+   ++Q +GRA+R    K I+
Sbjct: 562 SVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAII 610


>gi|260060951|ref|YP_003194031.1| transcription-repair coupling factor [Robiginitalea biformata
           HTCC2501]
 gi|88785083|gb|EAR16252.1| transcription-repair coupling factor [Robiginitalea biformata
           HTCC2501]
          Length = 1121

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 89/192 (46%), Gaps = 14/192 (7%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G+TGS  +F +A+  +A   P +V+  +K  AA + ++ +     + V ++     Y 
Sbjct: 32  LDGLTGSSLSFVVAETFKAQVCPMLVLLGDKEEAAYVLNDLEELLGRDNVLFYPG--SYR 89

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYS 291
           +P           E E + N  +       +R    +   ++VS    ++  + + +  S
Sbjct: 90  RP----------YEIEETDNANVLLRAEVLSRISSRKKPALIVSYPDALFEKVVTRKELS 139

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           +  +++++GD++    L  +L +  +KR D     G F V G  +++F S   D  +R+ 
Sbjct: 140 RNTLKVRVGDNLSLDFLNETLFEYHFKRVDFVTEPGEFSVRGGIVDVF-SFSHDEPYRLE 198

Query: 352 MFGNDIEEISEF 363
            FG++I+ I  F
Sbjct: 199 FFGDEIDSIRSF 210



 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 15/157 (9%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY--LYER---NIRVRYM 612
           P+E R  R   E + D I    Q+G ++          E++ E   L +R   + RV   
Sbjct: 741 PIESRVVRFGEEVIRDAIRYEIQRGGQVFFV---HNRIENIAEVAGLIQRLVPDARVGIG 797

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H +++  +  +++ D   G+FDVLV   ++  GLD+     + I +A+  G     + L 
Sbjct: 798 HGQMEGKKLEKLMLDFMNGEFDVLVSTTIIESGLDVTNANTILINNANNFGL----SDLH 853

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           Q  GR  R+ N K   Y   IT    +   E  +R E
Sbjct: 854 QMRGRVGRS-NKKAFCY--FITPPYHVMTAEARKRME 887


>gi|296129739|ref|YP_003636989.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296021554|gb|ADG74790.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 581

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V T+  AE++   L +R I   ++  +V   +R  I+  LR G  DVLV  ++   GLD+
Sbjct: 261 VRTREAAEEIGNVLVQRGIAAAHISGDVAQADRERIVERLRSGTLDVLVATDVAARGLDV 320

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              GLV  LD  +E       + +  IGR  R
Sbjct: 321 ERIGLVVNLDLPRE-----PEAYVHRIGRTGR 347


>gi|182414804|ref|YP_001819870.1| transcription-repair coupling factor [Opitutus terrae PB90-1]
 gi|177842018|gb|ACB76270.1| transcription-repair coupling factor [Opitutus terrae PB90-1]
          Length = 1205

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 107/256 (41%), Gaps = 23/256 (8%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G+T S +   + ++      P  ++    + AA+  +E   FF H A +   +     
Sbjct: 12  LTGITPSAQGAVLTELTLRHPAPVWIVVAADLKAAERLAEDAAFF-HGAAQLPHAQTTLV 70

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRM-RHSATRSLLERND------------------CI 273
            PE+ +P      E  ++ N++   + +  ATRSL                        I
Sbjct: 71  FPES-MPDAGDMREAFAASNDRFTVLSKLRATRSLGVATSSEVGGARRRGGATALPPLVI 129

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V +  + +  + ++E ++     L  G +   + LL  L +  Y  + +    G + + G
Sbjct: 130 VTTPGALLQPVPALEEFATREFTLSRGQTQSFQGLLERLQQLDYDSEAVCEAPGHYAIRG 189

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+++P    +  +R+  FG++IE I EF P+T +    VE+I I A+S  V   P+  
Sbjct: 190 GIIDVYPV-TANTPYRLDFFGDEIEAIREFDPVTQRSGATVESITISASSR-VRLDPSKT 247

Query: 394 TAMKYIKEELKMRLIE 409
               Y+     + LIE
Sbjct: 248 GIADYLSPRTHLVLIE 263



 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +A  L E + +  I V +   E   LE  E++ +   G++ +LV   ++  GLDIP C  
Sbjct: 839 VAARLRELMPDVTIGVGHGQMEAADLE--EVMTEFVAGRYQLLVCTTIIESGLDIPNCNT 896

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR 680
           + I  AD+ G     + L Q  GR  R
Sbjct: 897 ILIEGADRFGL----SQLYQLRGRVGR 919


>gi|188574426|ref|YP_001911355.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188518878|gb|ACD56823.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 831

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 33/182 (18%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565
           P  I+ SAT G+ +    Q +I EQ+        PTG     L +PPV      +R SAR
Sbjct: 239 PQFILCSATIGNPQ-AHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618
           +Q   +     +A + GL+ L+   T+ M E LT+YL +       +  R+R        
Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPPRIRAYRGGYLP 354

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER E+ R +R G  D +V  + L  G+DI    +V +      G+  S  +  Q  GRA
Sbjct: 355 TERREVERAMRAGTIDGIVSTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 409

Query: 679 AR 680
            R
Sbjct: 410 GR 411


>gi|57237518|ref|YP_178532.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni RM1221]
 gi|57166322|gb|AAW35101.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni RM1221]
 gi|315057884|gb|ADT72213.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 607

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186
           ++I N  KD+ F         + DQ  A+  + K +HS+E + ++++G  G GKT  +  
Sbjct: 213 FNIANWLKDLPF-------SLTKDQLNALKDIEKDLHSKEARRRVIMGDVGCGKTLVLLG 265

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
             +    + AI+MAP  ILA QLY E K F P
Sbjct: 266 AALMVYPKQAILMAPTSILAHQLYEEAKKFLP 297


>gi|46447155|ref|YP_008520.1| transcription-repair coupling factor [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400796|emb|CAF24245.1| probable transcription-repair coupling factor mfd [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 1101

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 1/108 (0%)

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            I+ S  +C+  + +  ++ ++ + LK  +S    +L+  L    Y+R+ I   +G F V
Sbjct: 117 IILTSLQACLQKLIAPSAFQKLYLTLKANESFFFDDLIQKLNLMGYQRKFIASDKGEFAV 176

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            G  I++FP    D  +R+  +G+D+E I  + P+    +R VE I I
Sbjct: 177 RGGIIDVFPVSSPD-PYRLEFWGDDLESIRIYDPIGQISVRAVEQIDI 223


>gi|195109284|ref|XP_001999217.1| GI23184 [Drosophila mojavensis]
 gi|193915811|gb|EDW14678.1| GI23184 [Drosophila mojavensis]
          Length = 724

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           ++ + D+YD     ++   +I++ V TKR  ++L  ++    +R   +H +    ER  +
Sbjct: 512 KSLLSDIYD----TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 567

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R GK ++LV  ++   GLD+   G+  +++ D   + ++    I  IGR  R+ N+
Sbjct: 568 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 621

Query: 685 KVILYA 690
           K   +A
Sbjct: 622 KGTSFA 627


>gi|21240852|ref|NP_640434.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21106124|gb|AAM34970.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 802

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 33/182 (18%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565
           P  I+ SAT G+      Q +I EQ+        PTG     L +PPV      +R SAR
Sbjct: 210 PQFILCSATIGN-PHAHAQALIEEQVHGITESGAPTGDKHVLLWNPPVVNADLGLRASAR 268

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618
           +Q   +     +A + GL+ L+   T+ M E LT+YL +       +  R+R        
Sbjct: 269 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPARIRAYRGGYLP 325

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER E+ R +R G  D ++  + L  G+DI    +V +      G+  S  +  Q  GRA
Sbjct: 326 TERREVERAMRAGNIDGIISTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 380

Query: 679 AR 680
            R
Sbjct: 381 GR 382


>gi|325662342|ref|ZP_08150951.1| hypothetical protein HMPREF0490_01690 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471344|gb|EGC74567.1| hypothetical protein HMPREF0490_01690 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 1115

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 20/245 (8%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G  GS KT     +    +   IV +     A Q+Y E++ F       Y          
Sbjct: 34  GCVGSQKTHLTCALGSDCKYKLIVTSGES-KAKQMYEEYR-FLKETVYLY---------- 81

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQM 293
               P  D          +Q+   R    ++LL    C V+++       +  +E+  + 
Sbjct: 82  ----PAKDLLFYHADLRGKQLVSSRMETIQALLLGEGCTVITTFDAFMDSLLPIETIRER 137

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
           I  LK+GD ++ +++   L    Y+R+      G F V G  ++++P   E+V  R+ ++
Sbjct: 138 IFSLKVGDIIDFEKVQKDLALLGYEREVQIEGPGQFAVRGGILDVYPL-TEEVPVRIELW 196

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
            ++I+ I  F   + + I N+E I IY  S ++  +    + + Y   E    L+ LE+ 
Sbjct: 197 DDEIDSIRTFDVESQRSIENLEEITIYPASEFMDEKTKRVSFLDYFPRE--DTLLFLEEP 254

Query: 414 GRLLE 418
            RL+E
Sbjct: 255 ARLIE 259


>gi|269122841|ref|YP_003305418.1| DEAD/DEAH box helicase domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268314167|gb|ACZ00541.1| DEAD/DEAH box helicase domain protein [Streptobacillus moniliformis
           DSM 12112]
          Length = 900

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 6/134 (4%)

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
           + K+ +   + E+L  LV+  YK++   + +G F + GD I+I+PS+L D   R+  F  
Sbjct: 102 EFKVNEEYSRDEILKYLVENGYKKEYTVLNKGEFAIRGDIIDIYPSNL-DNPIRLDFFDT 160

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
            +E I  F     + I N+E I ++ N      R  ++    + K  +++ L     E +
Sbjct: 161 ILENIKIFSTYDQRSIENIEEITVFGNVLSGMEREIVDMISIFSKGNIEIFL-----ENK 215

Query: 416 LLEAQRLEQRITYD 429
                +LEQ + +D
Sbjct: 216 EFLEVKLEQMLMFD 229


>gi|84621802|ref|YP_449174.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84365742|dbj|BAE66900.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 831

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 33/182 (18%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565
           P  I+ SAT G+ +    Q +I EQ+        PTG     L +PPV      +R SAR
Sbjct: 239 PQFILCSATIGNPQ-AHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618
           +Q   +     +A + GL+ L+   T+ M E LT+YL +       +  R+R        
Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPPRIRAYRGGYLP 354

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER E+ R +R G  D +V  + L  G+DI    +V +      G+  S  +  Q  GRA
Sbjct: 355 TERREVERAMRAGTIDGIVSTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 409

Query: 679 AR 680
            R
Sbjct: 410 GR 411


>gi|220907244|ref|YP_002482555.1| transcription-repair coupling factor [Cyanothece sp. PCC 7425]
 gi|219863855|gb|ACL44194.1| transcription-repair coupling factor [Cyanothece sp. PCC 7425]
          Length = 1169

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 91/204 (44%), Gaps = 27/204 (13%)

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            IV +  +    +  V ++    + L  G  +E K L   L +  Y+R  +    G +  
Sbjct: 126 AIVATERALQPHLPPVAAFQPDCLTLTQGMEMELKPLSDRLAQLGYERVALVETEGQWSR 185

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD I++FP   E +  R+  FG+++++I EF P T + + +++ + +   S      P 
Sbjct: 186 RGDIIDVFPVACE-LPVRLEWFGDELDKIREFDPATQRSLDSIDQLILTPTSF----SPI 240

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           + +A++                    EAQR + +     E  E   + Q+ E   R+L G
Sbjct: 241 ILSALQ--------------------EAQRQQLKTVLAPEEQEKLATGQTPEGMRRFL-G 279

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDE 475
                 P +L +Y+P+++L+ +DE
Sbjct: 280 LAFAH-PASLLDYLPDNTLIAIDE 302


>gi|255023011|ref|ZP_05294997.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J1-208]
          Length = 284

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 119/280 (42%), Gaps = 18/280 (6%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +LK +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +    
Sbjct: 14  IRAVLKALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDD---- 69

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                    +S  D  +   Y P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 70  --------LLSLMDVDRLFLY-PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    + +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
           +K +++++   L EL KE    + Q L + +  DLEML +
Sbjct: 240 VKRLEKKMTHTLNEL-KENE--DKQALVENLEEDLEMLRS 276


>gi|254236235|ref|ZP_04929558.1| hypothetical protein PACG_02203 [Pseudomonas aeruginosa C3719]
 gi|126168166|gb|EAZ53677.1| hypothetical protein PACG_02203 [Pseudomonas aeruginosa C3719]
          Length = 1448

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 9/139 (6%)

Query: 550 RPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER-- 605
           R  G+  PPV + +  +    E VYD +   A +    L+ V T+RMAE +T +L ER  
Sbjct: 255 RDLGIEVPPVALEAVMSNDTWELVYDRLAHLAGEHRTTLVFVNTRRMAERVTRFLAERLG 314

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V   H  +    R++  + L+ G+  VLV    L  G+DI +  LV  L +      
Sbjct: 315 SRQVAAHHGSLAKELRLDAEQRLKAGQLKVLVATASLELGIDIGDVELVCQLSSP----- 369

Query: 666 RSKTSLIQTIGRAARNVNS 684
           RS  + +Q +GR+  +V  
Sbjct: 370 RSIAAFLQRVGRSGHSVGG 388


>gi|86153829|ref|ZP_01072032.1| ATP-dependent DNA helicase recG [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85842790|gb|EAQ60002.1| ATP-dependent DNA helicase recG [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 607

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186
           ++I N  KD+ F         + DQ  A+  + K +HS+E + ++++G  G GKT  +  
Sbjct: 213 FNIANWLKDLPF-------SLTKDQLNALKDIEKDLHSKEARRRVIMGDVGCGKTLVLLG 265

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
             +    + AI+MAP  ILA QLY E K F P
Sbjct: 266 AALMVYPKQAILMAPTSILAHQLYEEAKKFLP 297


>gi|218890535|ref|YP_002439399.1| putative ATP-dependent DNA helicase [Pseudomonas aeruginosa LESB58]
 gi|218770758|emb|CAW26523.1| probable ATP-dependent DNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 1448

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 9/139 (6%)

Query: 550 RPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER-- 605
           R  G+  PPV + +  +    E VYD +   A +    L+ V T+RMAE +T +L ER  
Sbjct: 255 RDLGIEVPPVALEAVMSNDTWELVYDRLAHLAGEHRTTLVFVNTRRMAERVTRFLAERLG 314

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V   H  +    R++  + L+ G+  VLV    L  G+DI +  LV  L +      
Sbjct: 315 SRQVAAHHGSLAKELRLDAEQRLKAGQLKVLVATASLELGIDIGDVELVCQLSSP----- 369

Query: 666 RSKTSLIQTIGRAARNVNS 684
           RS  + +Q +GR+  +V  
Sbjct: 370 RSIAAFLQRVGRSGHSVGG 388


>gi|254241959|ref|ZP_04935281.1| hypothetical protein PA2G_02683 [Pseudomonas aeruginosa 2192]
 gi|126195337|gb|EAZ59400.1| hypothetical protein PA2G_02683 [Pseudomonas aeruginosa 2192]
          Length = 1448

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 9/139 (6%)

Query: 550 RPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER-- 605
           R  G+  PPV + +  +    E VYD +   A +    L+ V T+RMAE +T +L ER  
Sbjct: 255 RDLGIEVPPVALEAVMSNDTWELVYDRLAHLAGEHRTTLVFVNTRRMAERVTRFLAERLG 314

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V   H  +    R++  + L+ G+  VLV    L  G+DI +  LV  L +      
Sbjct: 315 SRQVAAHHGSLAKELRLDAEQRLKAGQLKVLVATASLELGIDIGDVELVCQLSSP----- 369

Query: 666 RSKTSLIQTIGRAARNVNS 684
           RS  + +Q +GR+  +V  
Sbjct: 370 RSIAAFLQRVGRSGHSVGG 388


>gi|116051286|ref|YP_789882.1| putative ATP-dependent DNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586507|gb|ABJ12522.1| putative ATP-dependent DNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 1448

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 9/139 (6%)

Query: 550 RPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER-- 605
           R  G+  PPV + +  +    E VYD +   A +    L+ V T+RMAE +T +L ER  
Sbjct: 255 RDLGIEVPPVALEAVMSNDTWELVYDRLAHLAGEHRTTLVFVNTRRMAERVTRFLAERLG 314

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V   H  +    R++  + L+ G+  VLV    L  G+DI +  LV  L +      
Sbjct: 315 SRQVAAHHGSLAKELRLDAEQRLKAGQLKVLVATASLELGIDIGDVELVCQLSSP----- 369

Query: 666 RSKTSLIQTIGRAARNVNS 684
           RS  + +Q +GR+  +V  
Sbjct: 370 RSIAAFLQRVGRSGHSVGG 388


>gi|319939812|ref|ZP_08014168.1| ATP-dependent DNA helicase RecG [Streptococcus anginosus 1_2_62CV]
 gi|319811025|gb|EFW07340.1| ATP-dependent DNA helicase RecG [Streptococcus anginosus 1_2_62CV]
          Length = 671

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+L  Y  ++   V  +H ++K+ E+  I++D + GK D+LV   ++  G+++P   +
Sbjct: 484 LEEELKAYFGDKT-HVALLHGKMKSDEKDAIMQDFKEGKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T+S
Sbjct: 543 MLIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTES 582


>gi|294625564|ref|ZP_06704190.1| helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292600129|gb|EFF44240.1| helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 831

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 33/182 (18%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565
           P  I+ SAT G+      Q +I EQ+        PTG     L +PPV      +R SAR
Sbjct: 239 PQFILCSATIGN-PHAHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618
           +Q   +     +A + GL+ L+   T+ M E LT+YL +       +  R+R        
Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPARIRAYRGGYLP 354

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER E+ R +R G  D ++  + L  G+DI    +V +      G+  S  +  Q  GRA
Sbjct: 355 TERREVERAMRAGTIDGIISTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 409

Query: 679 AR 680
            R
Sbjct: 410 GR 411


>gi|166710033|ref|ZP_02241240.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 831

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 33/182 (18%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565
           P  I+ SAT G+ +    Q +I EQ+        PTG     L +PPV      +R SAR
Sbjct: 239 PQFILCSATIGNPQ-AHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618
           +Q   +     +A + GL+ L+   T+ M E LT+YL +       +  R+R        
Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPPRIRAYRGGYLP 354

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER E+ R +R G  D +V  + L  G+DI    +V +      G+  S  +  Q  GRA
Sbjct: 355 TERREVERAMRAGTIDGIVSTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 409

Query: 679 AR 680
            R
Sbjct: 410 GR 411


>gi|86151660|ref|ZP_01069874.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124010|ref|YP_004066014.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841289|gb|EAQ58537.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315017732|gb|ADT65825.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 607

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186
           ++I N  KD+ F         + DQ  A+  + K +HS++ K ++++G  G GKT  +  
Sbjct: 213 FNIANWIKDLPF-------SLTKDQLNALKDIEKDLHSKDAKRRVIMGDVGCGKTLVLLG 265

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
             +    + AI+MAP  ILA QLY E K F P
Sbjct: 266 AALMVYPKQAILMAPTSILAYQLYEEAKKFLP 297


>gi|116333178|ref|YP_794705.1| transcription-repair coupling factor [Lactobacillus brevis ATCC
           367]
 gi|116098525|gb|ABJ63674.1| Transcription-repair coupling factor (superfamily II helicase)
           [Lactobacillus brevis ATCC 367]
          Length = 1180

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 105/249 (42%), Gaps = 22/249 (8%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q A I Q L G+  R   QL+ G+ GS +T  +A ++   QR  + +         LY  
Sbjct: 12  QYATIRQTL-GVGQR---QLVTGLNGSAETLFIASLLHEQQRSLVYVTDT------LYHA 61

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            +       +      +D+       P  +    + ++ + +    R  A R+L      
Sbjct: 62  SQLVDDLANLLDDDELFDF-------PVEELLAAEVATSSPEYRSARIDALRALQSDRPV 114

Query: 273 IVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           +VV+S+S +   + +  +++     + +GD  + + L   L    Y  Q +    G F V
Sbjct: 115 VVVTSLSGLRRFLPTPANFAAARFTVSVGDEFDLEALQQKLFAMGYAHQKLVAAPGDFAV 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP--- 388
            G  I+I+P    D   R+  F  +++ +  F P T + I N +T+++   + ++     
Sbjct: 175 RGSIIDIYPLA-ADYPIRIDFFDTEVDSLRYFDPATQRSIDNGQTVEVLPATDFILTADE 233

Query: 389 RPTLNTAMK 397
           R T  TA++
Sbjct: 234 RATGATALR 242



 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y+H ++   +   ++ D   G +DVLV   ++  G+DIP    + + +AD+ G    
Sbjct: 856 RVGYIHGKMTEAQLEGVLFDFLRGDYDVLVTTTIIETGIDIPNANTLFVENADRMGL--- 912

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 913 -SQLYQLRGRIGRS 925


>gi|107102803|ref|ZP_01366721.1| hypothetical protein PaerPA_01003871 [Pseudomonas aeruginosa PACS2]
          Length = 1449

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 9/139 (6%)

Query: 550 RPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER-- 605
           R  G+  PPV + +  +    E VYD +   A +    L+ V T+RMAE +T +L ER  
Sbjct: 256 RDLGIEVPPVALEAVMSNDTWELVYDRLAHLAGEHRTTLVFVNTRRMAERVTRFLAERLG 315

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V   H  +    R++  + L+ G+  VLV    L  G+DI +  LV  L +      
Sbjct: 316 SRQVAAHHGSLAKELRLDAEQRLKAGQLKVLVATASLELGIDIGDVELVCQLSSP----- 370

Query: 666 RSKTSLIQTIGRAARNVNS 684
           RS  + +Q +GR+  +V  
Sbjct: 371 RSIAAFLQRVGRSGHSVGG 389


>gi|220980020|emb|CAP72212.1| Putative helicase [Escherichia coli LF82]
          Length = 519

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +  E  L  Q  L  +  V  KR  + L E + E  +RV +++ E     R   +  L
Sbjct: 355 EAIVREALLYKQHSLNCMTLVRLKRHGQILMEMMKESGLRVDFIYGESNQSTRQAKLNSL 414

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             G+ DVL+G  +L  G+D+P  G V +    K     ++  + Q +GR  R
Sbjct: 415 ASGEIDVLIGSTILDVGVDVPSVGAVILAGGGK-----AEVEMRQRVGRGLR 461


>gi|195048170|ref|XP_001992482.1| GH24775 [Drosophila grimshawi]
 gi|193893323|gb|EDV92189.1| GH24775 [Drosophila grimshawi]
          Length = 977

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           N AA  G +I++ V TK   ED+ + +         +H +    ER  ++RD R GK ++
Sbjct: 487 NNAANAGNKIIIFVETKIKVEDILQIIRNEGYTATSIHGDKSQSERDSVLRDFRNGKSNI 546

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           L+  ++   GLD+ +   V   D     +  S  + +  IGR  R
Sbjct: 547 LIATDVASRGLDVEDLQYVINYD-----YPNSSENYVHRIGRTGR 586


>gi|296388231|ref|ZP_06877706.1| putative ATP-dependent DNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 1449

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 9/139 (6%)

Query: 550 RPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER-- 605
           R  G+  PPV + +  +    E VYD +   A +    L+ V T+RMAE +T +L ER  
Sbjct: 256 RDLGIEVPPVALEAVMSNDTWELVYDRLAHLAGEHRTTLVFVNTRRMAERVTRFLAERLG 315

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V   H  +    R++  + L+ G+  VLV    L  G+DI +  LV  L +      
Sbjct: 316 SRQVAAHHGSLAKELRLDAEQRLKAGQLKVLVATASLELGIDIGDVELVCQLSSP----- 370

Query: 666 RSKTSLIQTIGRAARNVNS 684
           RS  + +Q +GR+  +V  
Sbjct: 371 RSIAAFLQRVGRSGHSVGG 389


>gi|195144578|ref|XP_002013273.1| GL23489 [Drosophila persimilis]
 gi|194102216|gb|EDW24259.1| GL23489 [Drosophila persimilis]
          Length = 649

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           ++ + D+YD     ++   +I++ V TKR  ++L  ++    +R   +H +    ER  +
Sbjct: 441 KSLLSDIYD----TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 496

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R GK ++LV  ++   GLD+   G+  +++ D   + ++    I  IGR  R+ N+
Sbjct: 497 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 550

Query: 685 KVILYA 690
           K   +A
Sbjct: 551 KGTSFA 556


>gi|45657330|ref|YP_001416.1| transcription-repair coupling factor [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45600568|gb|AAS70053.1| transcription-repair coupling factor [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 1186

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 94/220 (42%), Gaps = 15/220 (6%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           E V  +  VT    +   + + + + +  +V++ N   A  L+ E  +F P N +     
Sbjct: 64  EVVGSVYSVTTGSHSILASSLFQKLNQTILVVSENNTSAEFLFREALSFLPSNDL----- 118

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGS 286
                    Y+P  +    +      ++ R R  A   +L     ++ +SVS  +  +  
Sbjct: 119 --------IYLPGQEVLPYEYMRYPSEMKRERIKAIAKILSGEPVLIFTSVSGFLKTLPP 170

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           +++     + LK G  ++ + LL  L+   YKR  +    G F + G  ++IF S+  + 
Sbjct: 171 IQTMQGRAIVLKKGKEIDLESLLIQLIDLGYKRVQVCETFGEFSLKGGILDIFSSYSTE- 229

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
             R+ +FG +IE I  F P + + + +++   +     Y+
Sbjct: 230 PVRIDLFGEEIESIRTFDPDSQRSMTDLDQAVLLPADEYI 269


>gi|124485977|ref|YP_001030593.1| Hef nuclease [Methanocorpusculum labreanum Z]
 gi|124363518|gb|ABN07326.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
           Z]
          Length = 763

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 15/102 (14%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+IE IR  R G++ VLV  ++  EGLDIP   LV   +A     + S+   IQ  GR  
Sbjct: 410 EQIEAIRQFREGEYTVLVATSVGEEGLDIPSTDLVIFYEA-----VPSEIRSIQRKGRTG 464

Query: 680 RNVNSKVILYADTITKSIQLAIDETTR----RREKQLEHNKK 717
           RN   K+I+    +T+      DET R     REKQ++   K
Sbjct: 465 RNSTGKIIVL---VTRG---TTDETYRWVSNTREKQMQKGVK 500


>gi|222823694|ref|YP_002575268.1| ATP-dependent DNA helicase [Campylobacter lari RM2100]
 gi|222538916|gb|ACM64017.1| ATP-dependent DNA helicase [Campylobacter lari RM2100]
          Length = 607

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSR-EKVQLLLGVTGSGKTFT-MAKVIEAMQR 194
           DI+ +    +++P+ DQ  AI  + K + S+  K ++++G  G GKT   +A  +    +
Sbjct: 211 DISSWLKGLEFNPTNDQLLAIEDIKKDLQSKVAKRRVVMGDVGCGKTLIILAASLLVYPK 270

Query: 195 PAIVMAPNKILAAQLYSEFKNFFP 218
            AI+MAP  ILA Q+Y E K   P
Sbjct: 271 KAILMAPTSILAEQIYHEAKRLLP 294


>gi|160947369|ref|ZP_02094536.1| hypothetical protein PEPMIC_01303 [Parvimonas micra ATCC 33270]
 gi|158446503|gb|EDP23498.1| hypothetical protein PEPMIC_01303 [Parvimonas micra ATCC 33270]
          Length = 1168

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 77/418 (18%), Positives = 169/418 (40%), Gaps = 38/418 (9%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +  +++  N+  A +L  E K+      V Y              P  +      +S+  
Sbjct: 52  KNLVLLVENENRANELCDELKSLVGDKVVVY--------------PNFEIRFHNINSLET 97

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSL 312
            ++ +R      LL +   I++++ S +   I + + +    + +     V  KEL  +L
Sbjct: 98  NLENIRIEIMNRLLSKEKFIIITTASALSKKISTPKFFKSHYIYIDENLEVNLKELTENL 157

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           +K  Y R D    +G F + G   +IFP + ++   R+ +FG+DI+ I  F   + + + 
Sbjct: 158 IKMHYDRVDFVEAKGQFSIRGSIFDIFPVNFKN-PIRIELFGDDIDSIRIFDINSQRSVE 216

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE--AQRLEQRITYDL 430
            +  ++I      V  +  +   +  + ++++ +L +L+  G+ +E   ++  Q I  DL
Sbjct: 217 KLNKVEIIPAKEMVLSKSDVENILNGLNKDIE-KLQKLKLFGKDIEKSTEKFYQ-IYNDL 274

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           ++     +   I  Y R            TL +Y+ +DS++   E  + I   +      
Sbjct: 275 KINYHISNMDLISPYIR-------KGSYSTLLDYLAQDSII-CTEDILKIYDKNLEIENL 326

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
           FH     +         ++N  +     + L P   ++        +   Q +   +II 
Sbjct: 327 FHENVVFS---------IENAEILDSHKDILIPFEHILRRIKDFSIINFTQLLKRTKIIN 377

Query: 551 PTGLVD-PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           P  +++   +E      + + ++  +    Q+G +I++   +   A +L E LY  NI
Sbjct: 378 PKSIINLKTIEAEIFNRKFDLLFQNLKSKLQRGYKIVIFAGSLEKANNLKEILYAENI 435



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           ++   HS++   E   I+ D + G++D+L+   ++  G+DI  C  + I DADK G    
Sbjct: 863 KIAMAHSKLSNKELENIMYDFQEGEYDILLCTTIIETGMDIKNCNTMIIYDADKMGL--- 919

Query: 668 KTSLIQTIGRAAR 680
            + L Q  GR  R
Sbjct: 920 -SQLYQLKGRIGR 931


>gi|76788164|ref|YP_328735.1| transcription-repair coupling factor [Streptococcus agalactiae
           A909]
 gi|77405617|ref|ZP_00782706.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
 gi|76563221|gb|ABA45805.1| transcription-repair coupling factor [Streptococcus agalactiae
           A909]
 gi|77175761|gb|EAO78541.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
          Length = 1165

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 137/307 (44%), Gaps = 33/307 (10%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G +G+ K   +A   E + +  +V+   +  + +L S+  +    + V      Y 
Sbjct: 26  QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQNDSDKLSSDISSLIGEDNV------YQ 79

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVE 288
           ++  +  VP  +      SS+++ I R+  SA R L   E+N  ++ S       + + E
Sbjct: 80  FFADD--VPAAEFIF---SSLDKSISRL--SALRFLKDPEKNGVLITSISGLRLLLPNPE 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            +S+   + +IG      +L  +LV   Y++       G F   GD ++IF    ++  +
Sbjct: 133 VFSKSQYKFEIGQECYLDKLSKNLVNLGYQKVSQVFSPGEFSQRGDILDIF-EMTQEYPY 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FG++I+ I +F   T + ++ +E+++I      +        A K +         
Sbjct: 192 RLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDIILQDADFERAKKKL--------- 242

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
               EG L+ A  +++   Y  E+L  T +     +  R+L+     E    + +YIPE 
Sbjct: 243 ----EGYLVTASEVQR--AYLSEVLSATENHFKHSDIRRFLSIFY--EKEWGILDYIPEG 294

Query: 469 SLLFVDE 475
           + LFVD+
Sbjct: 295 TPLFVDD 301


>gi|17230443|ref|NP_486991.1| hypothetical protein all2951 [Nostoc sp. PCC 7120]
 gi|17132045|dbj|BAB74650.1| all2951 [Nostoc sp. PCC 7120]
          Length = 517

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 16/127 (12%)

Query: 574 EINLAAQQGLRILLTVLTKR--------MAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           EI L     LRIL  +L K          A++ T Y   +++ +  +  +    ER EI+
Sbjct: 315 EIALGTDSKLRILANLLAKHYPERVLIFTADNATVYKISQDLLIPAITHQTPVKERHEIL 374

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NV- 682
              R G+++ LV  ++L EG+D+P   +  IL         S    IQ +GR  R  N+ 
Sbjct: 375 TKFREGEYNTLVASHVLNEGVDVPAAAIAIILSGTG-----STREYIQRLGRILRKGNIQ 429

Query: 683 NSKVILY 689
           N + ILY
Sbjct: 430 NKQAILY 436


>gi|256545262|ref|ZP_05472627.1| ATP-dependent DNA helicase RecG [Anaerococcus vaginalis ATCC 51170]
 gi|256399089|gb|EEU12701.1| ATP-dependent DNA helicase RecG [Anaerococcus vaginalis ATCC 51170]
          Length = 659

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           +NIR+  +H ++K  E+ EI+RD   GK D+L+   ++  G+D+     + I +A+  G 
Sbjct: 484 KNIRIEKLHGKLKASEKEEILRDFSDGKIDILISTTVIEVGIDVSNANCMIIYNANNFGL 543

Query: 665 LRSKTSLIQTIGRAAR 680
               +SL Q  GR  R
Sbjct: 544 ----SSLHQLRGRIGR 555


>gi|195170555|ref|XP_002026077.1| GL16096 [Drosophila persimilis]
 gi|194110957|gb|EDW33000.1| GL16096 [Drosophila persimilis]
          Length = 554

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 67/135 (49%), Gaps = 6/135 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            +++D+   I   A    +I++ V TK+  ++L  ++    + V  +H +   ++R  ++
Sbjct: 353 AKLKDLLSHIYDQAHAPGKIIIFVATKKKTDELARFINAFGVSVGSIHGDKSQMDRDSVL 412

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D R G+ ++LV  ++   GLD+   G+  +++ D   + +S    I  IGR  R + SK
Sbjct: 413 NDFRSGRANILVATDVAARGLDVD--GIKYVINFD---YPQSSEDYIHRIGRTGRKL-SK 466

Query: 686 VILYADTITKSIQLA 700
              YA    K+ + A
Sbjct: 467 GTSYAFFTRKNARCA 481


>gi|194745414|ref|XP_001955183.1| GF18634 [Drosophila ananassae]
 gi|190628220|gb|EDV43744.1| GF18634 [Drosophila ananassae]
          Length = 704

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           ++ + D+YD     ++   +I++ V TKR  ++L  ++    +R   +H +    ER  +
Sbjct: 502 KSLLSDIYD----TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFV 557

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R GK ++LV  ++   GLD+   G+  +++ D   + ++    I  IGR  R+ N+
Sbjct: 558 LREFRSGKSNILVATDVAARGLDVD--GIKYVINFD---YPQNSEDYIHRIGRTGRS-NT 611

Query: 685 KVILYA 690
           K   +A
Sbjct: 612 KGTSFA 617


>gi|56808860|ref|ZP_00366571.1| COG1197: Transcription-repair coupling factor (superfamily II
           helicase) [Streptococcus pyogenes M49 591]
          Length = 1167

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 98/209 (46%), Gaps = 12/209 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G++GS K   +A      Q+  +V+   +    +L S+  +      V  F  + D
Sbjct: 26  QLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                 ++  +   ++K  S  E +  +R+  ++ +L     + +S +  +     V + 
Sbjct: 84  DVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSGLRTLLPNPDVFTK 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           SQ  +QL +G++ +   L   L+   Y++    I  G F   GD ++I+    +++ +R+
Sbjct: 137 SQ--IQLTVGENYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             FG+DI+ I +F+P T +    +E I I
Sbjct: 194 EFFGDDIDSIRQFHPETQKSFEQLEGIFI 222


>gi|269103906|ref|ZP_06156603.1| ATP-dependent DNA helicase RecG [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163804|gb|EEZ42300.1| ATP-dependent DNA helicase RecG [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 693

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 8/106 (7%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A DLTE L E  +++  +H  +K  E+  I+   + G+ D+LV   ++  G+D+P   L+
Sbjct: 508 AADLTEKLPE--LKIGLVHGRMKAQEKQHIMAQFKAGELDLLVATTVIEVGVDVPNSSLM 565

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR-NVNSK-VILYADTITKSIQ 698
            I + ++ G       L Q  GR  R N+ S  V+LY   ++K+ Q
Sbjct: 566 VIENPERLGL----AQLHQLRGRVGRGNIASHCVLLYKSPLSKTAQ 607


>gi|58579789|ref|YP_198805.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58424383|gb|AAW73420.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 865

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 33/182 (18%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565
           P  I+ SAT G+ +    Q +I EQ+        PTG     L +PPV      +R SAR
Sbjct: 273 PQFILCSATIGNPQ-AHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 331

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618
           +Q   +     +A + GL+ L+   T+ M E LT+YL +       +  R+R        
Sbjct: 332 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPPRIRAYRGGYLP 388

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER E+ R +R G  D +V  + L  G+DI    +V +      G+  S  +  Q  GRA
Sbjct: 389 TERREVERAMRAGTIDGIVSTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 443

Query: 679 AR 680
            R
Sbjct: 444 GR 445


>gi|24215213|ref|NP_712694.1| transcription-repair coupling factor [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24196293|gb|AAN49712.1|AE011418_8 transcription-repair coupling factor [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 1186

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 94/220 (42%), Gaps = 15/220 (6%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           E V  +  VT    +   + + + + +  +V++ N   A  L+ E  +F P N +     
Sbjct: 64  EVVGSVYSVTTGSHSILASSLFQKLNQTILVVSENNTSAEFLFREALSFLPSNDL----- 118

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGS 286
                    Y+P  +    +      ++ R R  A   +L     ++ +SVS  +  +  
Sbjct: 119 --------IYLPGQEVLPYEYMRYPSEMKRERIKAIAKILSGEPVLIFTSVSGFLKTLPP 170

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           +++     + LK G  ++ + LL  L+   YKR  +    G F + G  ++IF S+  + 
Sbjct: 171 IQTMQGRAIVLKKGKEIDLESLLIQLIDLGYKRVQVCETFGEFSLKGGILDIFSSYSTE- 229

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
             R+ +FG +IE I  F P + + + +++   +     Y+
Sbjct: 230 PVRIDLFGEEIESIRTFDPDSQRSMTDLDQAVLLPADEYI 269


>gi|325926824|ref|ZP_08188129.1| helicase family protein with metal-binding cysteine cluster
           [Xanthomonas perforans 91-118]
 gi|325542790|gb|EGD14248.1| helicase family protein with metal-binding cysteine cluster
           [Xanthomonas perforans 91-118]
          Length = 831

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 33/182 (18%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565
           P  I+ SAT G+      Q +I EQ+        PTG     L +PPV      +R SAR
Sbjct: 239 PQFILCSATIGN-PHAHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618
           +Q   +     +A + GL+ L+   T+ M E LT+YL +       +  R+R        
Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPARIRAYRGGYLP 354

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER E+ R +R G  D ++  + L  G+DI    +V +      G+  S  +  Q  GRA
Sbjct: 355 TERREVERAMRAGTIDGIISTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 409

Query: 679 AR 680
            R
Sbjct: 410 GR 411


>gi|269794110|ref|YP_003313565.1| transcription-repair coupling factor Mfd [Sanguibacter keddieii DSM
           10542]
 gi|269096295|gb|ACZ20731.1| transcription-repair coupling factor Mfd [Sanguibacter keddieii DSM
           10542]
          Length = 1212

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 31/220 (14%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P+G +P  +A +  G  + + +    GV GS              RP +V+      A +
Sbjct: 34  PAGVRPPLLAAM-AGARASDGLVPETGVEGS--------------RPLVVVTATGREADE 78

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L S  + + P++ V    ++ +    E   PR+DT  ++ +       R+ H +    + 
Sbjct: 79  LASALRCYLPYDDVAVLPAW-ETLPHERLSPRSDTVAKRIAVFR----RLAHPSADLGMT 133

Query: 269 RNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
               ++V  V  +      G+G +E      V+L+  D  +  ++   L    Y R D+ 
Sbjct: 134 GPVRVLVMPVRALLQPVVDGLGDLEP-----VRLETRDRADLADVADRLSAAAYARVDMV 188

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
             RG F V G  +++FP   ED   RV  +G ++EEI  F
Sbjct: 189 ERRGEFAVRGGILDVFPP-TEDHPLRVEFWGEEVEEIRWF 227


>gi|331086145|ref|ZP_08335227.1| hypothetical protein HMPREF0987_01530 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406304|gb|EGG85818.1| hypothetical protein HMPREF0987_01530 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 1113

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 108/254 (42%), Gaps = 22/254 (8%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G  GS KT     +    +   IV +  +  A Q+Y E++ F       Y          
Sbjct: 32  GCVGSQKTHLTCALGSDCKYKLIVTS-GESKAKQMYEEYR-FLKETVYLY---------- 79

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQM 293
               P  D          +Q+   R    ++LL    C V+++       +  +E+  + 
Sbjct: 80  ----PAKDLLFYHADLRGKQLVSSRMETIQALLLGEGCTVITTFDAFMDSLLPIETIRER 135

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
           +  LK+GD ++ +++   L    Y+R+      G F V G  ++++P   E+V  R+ ++
Sbjct: 136 VFSLKVGDIIDFEKVQKDLTLLGYEREVQIEGPGQFAVRGGILDVYPL-TEEVPVRIELW 194

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE---- 409
            ++I+ I  F   + + I N+E I IY  S ++  +    + + Y   E  +  +E    
Sbjct: 195 DDEIDSIRTFDVESQRSIENLEEITIYPASEFMDEKTKRVSFLDYFPREDTLLFLEEPAR 254

Query: 410 LEKEGRLLEAQRLE 423
           L ++G  +EA+ +E
Sbjct: 255 LIEQGEAVEAEFIE 268


>gi|291557562|emb|CBL34679.1| Helicase subunit of the DNA excision repair complex [Eubacterium
           siraeum V10Sc8a]
          Length = 93

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 8/100 (8%)

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
           ++ A+ ET RRRE Q+++N++H I P+++ + +  V++    +D          Q+   +
Sbjct: 1   MEKAVTETNRRREIQMKYNEEHGITPKTIVKDVRAVLEISSGKD--------KGQKRKYT 52

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           K + +A +K    +M  AA  L+FE AA +RD+IK L+ S
Sbjct: 53  KAEREALIKQYTAEMKNAAKLLDFEHAAYLRDKIKELQES 92


>gi|299820651|ref|ZP_07052540.1| transcription-repair coupling factor [Listeria grayi DSM 20601]
 gi|299817672|gb|EFI84907.1| transcription-repair coupling factor [Listeria grayi DSM 20601]
          Length = 1186

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/321 (20%), Positives = 139/321 (43%), Gaps = 25/321 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++K +  ++  QL+ G++GS +    + V  A +R  +++  N   A +LY + ++ 
Sbjct: 21  IQSIIKALDDKKAAQLVTGLSGSARALFASVVESAGKRTVLIVTHNLYHAQKLYDDLESL 80

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE-QIDRMRHSATRSLLERNDCIVV 275
              + +              ++   D  I  E S++  ++   R    + LL +   +VV
Sbjct: 81  VDKDKL--------------FLYPADELISSELSVSSPELRGQRVEVLQFLLSQKPGVVV 126

Query: 276 SSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
             V+ +  I   +S + +  + +  G+ +E  +L   LV   Y    +    G F V G 
Sbjct: 127 VPVAGLRRILPPKSLWQKNNLTITQGEEIEPNQLRERLVTMGYTASQMVNTPGEFSVRGG 186

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I+++P   E+   R+ +F  +I+ +  F   T +  + V T ++   +  +  +     
Sbjct: 187 IIDVYPI-TEEFPVRIELFDTEIDSLRYFDVETQRSQKKVNTFQLLPATEILIEQEDFPA 245

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
            +  +++ L   L  L K+    + Q L + I  DLE+L +      +  Y  ++     
Sbjct: 246 IVTRLEKHLAASLQALSKDE---DKQTLMENIEEDLELLRSGIKPDMLFKYIGFIY---- 298

Query: 455 GEPPPTLFEYIPEDSLLFVDE 475
            E   TL +Y  E+++L +DE
Sbjct: 299 -EQQGTLLDYAAENTVLMLDE 318



 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV + H ++   E   +I     G++DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 866 DARVAFAHGQMTETELESVIVSFLEGEYDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 924

Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690
              + L Q  GR  R   S  I YA
Sbjct: 925 ---SQLYQLRGRVGR---SNRIAYA 943


>gi|15598468|ref|NP_251962.1| ATP-dependent DNA helicase [Pseudomonas aeruginosa PAO1]
 gi|9949397|gb|AAG06660.1|AE004749_9 probable ATP-dependent DNA helicase [Pseudomonas aeruginosa PAO1]
          Length = 1448

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 9/139 (6%)

Query: 550 RPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER-- 605
           R  G+  PPV + +  +    E VYD +   A +    L+ V T+RMAE +T +L ER  
Sbjct: 255 RDLGIEVPPVALEAVMSNDTWELVYDRLAHLAGEHRTTLVFVNTRRMAERVTRFLAERLG 314

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V   H  +    R++  + L+ G+  VLV    L  G+DI +  LV  L +      
Sbjct: 315 SRQVAAHHGSLAKELRLDAEQRLKAGQLKVLVATASLELGIDIGDVELVCQLSSP----- 369

Query: 666 RSKTSLIQTIGRAARNVNS 684
           RS  + +Q +GR+  +V  
Sbjct: 370 RSIAAFLQRVGRSGHSVGG 388


>gi|294666370|ref|ZP_06731617.1| helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292603867|gb|EFF47271.1| helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 831

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 33/182 (18%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565
           P  I+ SAT G+      Q +I EQ+        PTG     L +PPV      +R SAR
Sbjct: 239 PQFILCSATIGN-PHAHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618
           +Q   +     +A + GL+ L+   T+ M E LT+YL +       +  R+R        
Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPARIRAYRGGYLP 354

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER E+ R +R G  D ++  + L  G+DI    +V +      G+  S  +  Q  GRA
Sbjct: 355 TERREVERAMRAGTIDGIISTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 409

Query: 679 AR 680
            R
Sbjct: 410 GR 411


>gi|315274585|ref|ZP_07869461.1| transcription-repair-coupling factor [Listeria marthii FSL S4-120]
 gi|313615787|gb|EFR89039.1| transcription-repair-coupling factor [Listeria marthii FSL S4-120]
          Length = 770

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/320 (20%), Positives = 136/320 (42%), Gaps = 23/320 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +LK +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLKALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V+    Y          P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  ID---VDRLFLY----------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    + +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKDFNISIAEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ +++++ + L EL+++         +  +    E LE   S    + + +Y+    P 
Sbjct: 240 VQRLEKKMTLTLNELKEDA------DKQALVENLEEELEMLRSGVKPDMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDE 475
             P +LF+Y+P+++ + +DE
Sbjct: 294 --PASLFDYLPKNTAILLDE 311


>gi|283954244|ref|ZP_06371768.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           414]
 gi|283794262|gb|EFC33007.1| ATP-dependent DNA helicase RecG [Campylobacter jejuni subsp. jejuni
           414]
          Length = 607

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 152 DQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-AKVIEAMQRPAIVMAPNKILAAQL 209
           DQ  A+  + K +HS E K ++++G  G GKT  +    +    + AI+MAP  ILA QL
Sbjct: 229 DQHNALKDIEKDLHSNEAKRRVIMGDVGCGKTLVLLGAALMVYPKQAILMAPTSILAYQL 288

Query: 210 YSEFKNFFP 218
           Y E K F P
Sbjct: 289 YEEAKKFLP 297


>gi|148925843|ref|ZP_01809530.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145844829|gb|EDK21933.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 612

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186
           ++I N  KD+ F         + DQ  A+  + K +HS+E + ++++G  G GKT  +  
Sbjct: 218 FNIANWLKDLPF-------SLTKDQLNALKDIEKDLHSKEARRRVIMGDVGCGKTLVLLG 270

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
             +    + AI+MAP  ILA QLY E K F P
Sbjct: 271 AALMVYPKQAILMAPTSILAHQLYEEAKKFLP 302


>gi|308233919|ref|ZP_07664656.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829]
 gi|328943400|ref|ZP_08240865.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829]
 gi|327491369|gb|EGF23143.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829]
          Length = 1198

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 20/213 (9%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           L ++ S + F +A    A  RP +++   +  A +       +   + V         Y 
Sbjct: 31  LNISQSARPFIVAACACAQARPILLVVSGEDAADRAARILAGWLGPDVVFR-------YP 83

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG--IGSVESYS 291
             A +P +D       S + ++   R  A   L +   C+VV+S   +         S++
Sbjct: 84  DRADLPWSD------KSASAEVCGTRAEALFHLAQPQRCVVVASARALLRRLPPKTSSFA 137

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDI-GIIR--GTFRVCGDSIEIFPSHLEDVAW 348
           Q   ++ IGD ++   L   LV   Y    +   +R  G F V GDS+++F S  E    
Sbjct: 138 QQ-QKICIGDELDIYALARQLVLWGYVSTTVVKEVREPGYFCVHGDSVDVF-SPCEQAPV 195

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           R+S FG++++EI +  P TGQ I + +    YA
Sbjct: 196 RISFFGDEVDEIRKVVPSTGQTISSQQQAVFYA 228


>gi|198462622|ref|XP_002135340.1| GA28491 [Drosophila pseudoobscura pseudoobscura]
 gi|198150906|gb|EDY73967.1| GA28491 [Drosophila pseudoobscura pseudoobscura]
          Length = 537

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 67/135 (49%), Gaps = 6/135 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            +++D+   I   A    +I++ V TK+  ++L  ++    + V  +H +   ++R  ++
Sbjct: 336 AKLKDLLSHIYDQAHAPGKIIIFVATKKKTDELARFINAFGVSVGSIHGDKSQMDRDSVL 395

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D R G+ ++LV  ++   GLD+   G+  +++ D   + +S    I  IGR  R + SK
Sbjct: 396 NDFRSGRANILVATDVAARGLDVD--GIKYVINFD---YPQSSEDYIHRIGRTGRKL-SK 449

Query: 686 VILYADTITKSIQLA 700
              YA    K+ + A
Sbjct: 450 GTSYAFFTRKNARCA 464


>gi|325126224|gb|ADY85554.1| RNA helicase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 453

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+M ++L +YL ++ ++V  +H  +   ER   +R++R G++  +V  +L   G+D+P 
Sbjct: 253 TKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQYVVASDLAARGIDLPG 312

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +  K+        +I  IGR  RN
Sbjct: 313 VSLVINYEIPKD-----LEFIIHRIGRTGRN 338


>gi|282880318|ref|ZP_06289032.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305820|gb|EFA97866.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           timonensis CRIS 5C-B1]
          Length = 583

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 14/115 (12%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +ED++ + +L      R+++   +K   + +   L+  N+    MHS+++  +R E++ +
Sbjct: 236 IEDIFKKGDLK-----RVIVFCGSKLKVKQVAAALHRMNVNCSEMHSDLEQAQRDEVMLN 290

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            + G+ DVLV  +++  G+DI +  +V   D   D E +       +  IGR AR
Sbjct: 291 FKSGQLDVLVATDIVARGIDIDDISMVINYDVPNDAEDY-------VHRIGRTAR 338


>gi|166714756|gb|ABY88092.1| UvrB [Stenotrophomonas sp. LMG 10853]
          Length = 61

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 34/54 (62%)

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
           +++FP+  +  A R+ +F  ++E+IS F PLTG+ +R +    IY  +HY T R
Sbjct: 2   VDVFPAESDSEAVRIELFEGEVEQISMFDPLTGESLRKMMRYTIYPKTHYATTR 55


>gi|104780391|ref|YP_606889.1| ATP-dependent DNA helicase Lhr [Pseudomonas entomophila L48]
 gi|95109378|emb|CAK14078.1| putative ATP-dependent DNA helicase Lhr [Pseudomonas entomophila
           L48]
          Length = 1424

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 22/152 (14%)

Query: 550 RPTGLVD-------------PPVEIRSA-RTQVEDV-YDEINLAAQQGLRILLTVLTKRM 594
           RP  +VD             PPV + +   T V DV YD +   A++    L+ V T+R+
Sbjct: 230 RPCAIVDIGHVRHRDLALEVPPVPLGAVMATDVWDVVYDRLAALAREHRTTLVFVNTRRL 289

Query: 595 AEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           AE LT +L ER  N  V   H  +    R+   + L+ G+  VLV    L  G+DI E  
Sbjct: 290 AERLTRHLGERLGNDAVAAHHGSLAKEYRLAAEQRLKAGELQVLVATASLELGIDIGEVD 349

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           LV  + +       S  + +Q +GR+   V+ 
Sbjct: 350 LVCQIASPG-----SIAAFLQRVGRSGHQVDG 376


>gi|68478729|ref|XP_716633.1| hypothetical protein CaO19.7392 [Candida albicans SC5314]
 gi|74656359|sp|Q5A4E2|DED1_CANAL RecName: Full=ATP-dependent RNA helicase DED1
 gi|46438305|gb|EAK97638.1| hypothetical protein CaO19.7392 [Candida albicans SC5314]
 gi|238881007|gb|EEQ44645.1| ATP-dependent RNA helicase ded1 [Candida albicans WO-1]
          Length = 672

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A + GL I+ T  TKRMA++L +YLY++      +H +    ER + +   + G   +LV
Sbjct: 440 ANENGLTIVFTE-TKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILV 498

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              +   GLDIP    V   D   +         +  IGR  R  N  +
Sbjct: 499 ATAVAARGLDIPNVSHVINYDLPSD-----IDDYVHRIGRTGRAGNVGI 542


>gi|315051166|ref|XP_003174957.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893]
 gi|311340272|gb|EFQ99474.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893]
          Length = 1425

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 7/86 (8%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DLR GK ++L+  ++L EG+D+  C LV   D  K+  LR   S +Q  GRA +  + 
Sbjct: 472 IDDLRSGKKNLLIATSVLEEGIDVSACDLVVCFDPPKQ--LR---SFVQRRGRARKASSK 526

Query: 685 KVILYA--DTITKSIQLAIDETTRRR 708
            VI YA  DT TK    A+++  + +
Sbjct: 527 FVIFYAEDDTTTKKDWEAMEDIMKEK 552


>gi|78045611|ref|YP_361786.1| putative helicase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78034041|emb|CAJ21686.1| putative helicase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 831

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 33/182 (18%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565
           P  I+ SAT G+      Q +I EQ+        PTG     L +PPV      +R SAR
Sbjct: 239 PQFILCSATIGN-PHAHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618
           +Q   +     +A + GL+ L+   T+ M E LT+YL +       +  R+R        
Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDLRKPARIRAYRGGYLP 354

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER E+ R +R G  D ++  + L  G+DI    +V +      G+  S  +  Q  GRA
Sbjct: 355 TERREVERAMRAGTIDGIISTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 409

Query: 679 AR 680
            R
Sbjct: 410 GR 411


>gi|221128417|ref|XP_002167172.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
           [Hydra magnipapillata]
          Length = 599

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +L+ V +K+ A+ L + L ++ +++   MHS+    ER  I+ +   G FD+LV  N+L 
Sbjct: 424 MLIFVESKKGADLLCDALTQKFSLKCESMHSDKTQSERTLIVNNFLTGSFDILVSTNILG 483

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+P    V + D     F  S    +  +GRA +
Sbjct: 484 RGIDLPNVRQVLLFD-----FPNSIEEYVHQVGRAGQ 515


>gi|159463464|ref|XP_001689962.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283950|gb|EDP09700.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 567

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A   G RI++   TKRM + L+ Y   R  R   +H + K  ER  +++  + G+  +LV
Sbjct: 369 AKPPGTRIIIFCTTKRMCDQLS-YQMGREFRSAAIHGDKKQSERDYVLQAFKDGRTPILV 427

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             ++   GLDIP    V   D     F       I  IGR  R
Sbjct: 428 ATDVAARGLDIPNVAAVVNFD-----FPTGTEDYIHRIGRTGR 465


>gi|313115462|ref|ZP_07800929.1| ATP-dependent DNA helicase RecG [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622229|gb|EFQ05717.1| ATP-dependent DNA helicase RecG [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 686

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 6/104 (5%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ED+ + L     RV  MH ++K  E+  ++ D + G+ D LV   ++  G+D+P   ++ 
Sbjct: 497 EDIAKALLPER-RVGLMHGKLKPKEKAAVMEDFKAGRLDALVSTTVIEVGVDVPNASVMV 555

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITKSIQ 698
           I +A++ G     ++L Q  GR  R    S   L +D  ++++Q
Sbjct: 556 IENAERYGL----SALHQLRGRVGRGAAESWCFLVSDNQSENVQ 595


>gi|221480806|gb|EEE19233.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
          Length = 657

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 5/102 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K+  +D+ EYL  + +    +H  +   ER E +R  R G+ DVLVG ++  +
Sbjct: 462 VLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSEAVRAFREGRKDVLVGTDVASK 521

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           GLD P    V   D  KE       + +  IGR  R   + V
Sbjct: 522 GLDFPAIQHVINFDMPKE-----IENYVHRIGRTGRCGRTGV 558


>gi|119960591|ref|YP_947136.1| transcription-repair coupling factor [Arthrobacter aurescens TC1]
 gi|119947450|gb|ABM06361.1| transcription-repair coupling factor [Arthrobacter aurescens TC1]
          Length = 1210

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A  L +   ++ P  +V  F S+ +    E   PR+DT + +  S+  ++     S T  
Sbjct: 77  AEDLTAALASYLPAESVATFPSW-ETLPHERLSPRSDT-VGRRLSVLRRLTHPETSTTAP 134

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           L      +       + G+G +     + V L++G      E++ +L    Y R D+   
Sbjct: 135 LRVVVAPVRAVVQPIVAGLGDL-----VPVTLQVGQERSFTEVVRALSDAAYARVDMVTH 189

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           RG F V G  +++FP   ED   RV  FG++++++  F
Sbjct: 190 RGEFAVRGGILDVFPP-TEDHPIRVEFFGDEVDQMRWF 226


>gi|104774414|ref|YP_619394.1| DEAD-box ATP dependent DNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103423495|emb|CAI98397.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 453

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+M ++L +YL ++ ++V  +H  +   ER   +R++R G++  +V  +L   G+D+P 
Sbjct: 253 TKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQYVVASDLAARGIDLPG 312

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +  K+        +I  IGR  RN
Sbjct: 313 VSLVINYEIPKD-----LEFIIHRIGRTGRN 338


>gi|94987637|ref|YP_595738.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS9429]
 gi|94991503|ref|YP_599602.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS2096]
 gi|94541145|gb|ABF31194.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS9429]
 gi|94545011|gb|ABF35058.1| Transcription-repair coupling factor [Streptococcus pyogenes
           MGAS2096]
          Length = 1167

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 97/209 (46%), Gaps = 12/209 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G++GS K   +A      Q+  +V+   +    +L S+  +      V  F  + D
Sbjct: 26  QLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                 ++  +   ++K  S  E +  +R+  ++ +L     + +S +  +     V + 
Sbjct: 84  DVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSGLRTLLPNPDVFTK 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           SQ  +QL +G+  +   L   L+   Y++    I  G F   GD ++I+    +++ +R+
Sbjct: 137 SQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             FG+DI+ I +F+P T +    +E I I
Sbjct: 194 EFFGDDIDSIRQFHPETQKSFEQLEGIFI 222


>gi|159043541|ref|YP_001532335.1| type III restriction protein res subunit [Dinoroseobacter shibae
           DFL 12]
 gi|157911301|gb|ABV92734.1| type III restriction protein res subunit [Dinoroseobacter shibae
           DFL 12]
          Length = 938

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R A+ + EY     +    +HS   +  R   +  L  G+ D+L  +++  EG+D+PE G
Sbjct: 483 RHADYMAEYFRTAGLNAIAVHSGQSSAPRASSLAALGRGEIDILFAVDMFNEGVDVPEIG 542

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            V +L   +   +      +Q +GR  R V  KV+   D I
Sbjct: 543 TVLMLRPTESAII-----WLQQLGRGLRRVEGKVLQVIDYI 578


>gi|77461253|ref|YP_350760.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77385256|gb|ABA76769.1| ATP dependent helicase, Lhr family [Pseudomonas fluorescens Pf0-1]
          Length = 1431

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 12/172 (6%)

Query: 550 RPTGLVDPPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           R  G+  PPV + +  A    E VYD +   A++    L+ V T+R+AE L+ +L ER  
Sbjct: 243 RDLGIEVPPVPLSAVMANDVWELVYDRLATLAREHRTTLIFVNTRRLAERLSRHLSERLG 302

Query: 608 R--VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +  V   H  +    R++  + L+ G+  VL+    L  G+DI E  LV  + +      
Sbjct: 303 KQAVAAHHGSLAKEFRLDAEQRLKRGELQVLIATASLELGIDIGEVDLVCQIASP----- 357

Query: 666 RSKTSLIQTIGRAARNVNS--KVILYADTITKSIQL-AIDETTRRREKQLEH 714
           RS    +Q +GR+   V    K  L+A T    I+  A+ +  RR E    H
Sbjct: 358 RSIAGFLQRVGRSGHQVGGTPKGRLFATTRDDLIECAALLDCVRRGELDTLH 409


>gi|47218845|emb|CAG02830.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 730

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 18/91 (19%)

Query: 610 RYMHSEVKTLERI------------EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           RY + ++  LER+            + IR  R G+ ++L+  ++  EGLDIPEC LV   
Sbjct: 392 RYENPKMSQLERVLLNQFGPDPEQKDTIRSFRQGRLNLLISTSVAEEGLDIPECNLVV-- 449

Query: 658 DADKEGFLRSKTSLIQTIGRA-ARNVNSKVI 687
              + G L ++ + IQ  GRA ARN    V+
Sbjct: 450 ---RYGLLTNEIAQIQASGRARARNSQYSVV 477


>gi|116514512|ref|YP_813418.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093827|gb|ABJ58980.1| Superfamily II DNA and RNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 453

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+M ++L +YL ++ ++V  +H  +   ER   +R++R G++  +V  +L   G+D+P 
Sbjct: 253 TKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQYVVASDLAARGIDLPG 312

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +  K+        +I  IGR  RN
Sbjct: 313 VSLVINYEIPKD-----LEFIIHRIGRTGRN 338


>gi|328353170|emb|CCA39568.1| eukaryotic initiation factor 4A [Pichia pastoris CBS 7435]
          Length = 486

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD I++      + ++   T+R  E+LTE L  +   V  +HSE+   ER  I+++ R
Sbjct: 337 DLYDSISVT-----QAVIFCNTRRKVEELTERLTAQKFTVSAIHSELSQTERDTIMQEFR 391

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   +L+  +LL  G+D+ +  LV   D  ++KE ++
Sbjct: 392 TGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYI 429


>gi|296812107|ref|XP_002846391.1| dicer-like protein 2 [Arthroderma otae CBS 113480]
 gi|238841647|gb|EEQ31309.1| dicer-like protein 2 [Arthroderma otae CBS 113480]
          Length = 1437

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 9/87 (10%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DL+ GK ++LV  ++L EG+D+  C LV   D  K+  LR   S +Q  GR AR  NS
Sbjct: 483 INDLKSGKKNLLVATSVLEEGIDVSACDLVVCFDPPKQ--LR---SFVQRRGR-ARKANS 536

Query: 685 KVILYA---DTITKSIQLAIDETTRRR 708
           K +++    DT TK    A+++  + R
Sbjct: 537 KYVIFHAEDDTSTKKDWEAMEDIMKER 563


>gi|2996312|gb|AAC13192.1| unknown [Yersinia pestis KIM 10]
          Length = 492

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 7/142 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +  E  +    GL  +  V  KR  + L E + E  ++V +++ E     R   +  L
Sbjct: 328 EAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLSSL 387

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA--ARNVNSKV 686
             G+ DVL+G  +L  G+D+P  G V +    K     ++  + Q +GR   A+   + V
Sbjct: 388 AAGRIDVLIGSTILDVGVDVPSVGAVILGGGGK-----AEVEMRQRVGRGLRAKKNQANV 442

Query: 687 ILYADTITKSIQLAIDETTRRR 708
               D I  S +  +  +  R+
Sbjct: 443 CFITDFIDVSNKYLMSHSYERK 464


>gi|322385798|ref|ZP_08059442.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC
           51100]
 gi|321270536|gb|EFX53452.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC
           51100]
          Length = 524

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R   S + I +         L I+  T++R 
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLLIIENLTKKRM 362

Query: 710 KQLE 713
           K L+
Sbjct: 363 KGLK 366


>gi|156720287|dbj|BAF76796.1| Vasa-related protein [Enchytraeus japonensis]
          Length = 990

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I+++V  KRMA+ ++ +L + +     +H  +   ER + +RD R G   +LV  N+  
Sbjct: 774 KIIVSVEEKRMADFISAFLSQASFPTASIHGNLTQQEREKALRDFRSGVSPILVATNVAA 833

Query: 644 EGLDIPE 650
            GLDIPE
Sbjct: 834 RGLDIPE 840


>gi|212223539|ref|YP_002306775.1| Hypothetical DNA/RNA repair helicase [Thermococcus onnurineus NA1]
 gi|212008496|gb|ACJ15878.1| Hypothetical DNA/RNA repair helicase [Thermococcus onnurineus NA1]
          Length = 458

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 80/185 (43%), Gaps = 34/185 (18%)

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------- 568
           W  +R   I + A  G    E    +  E +IR   L  P  EI +  + +         
Sbjct: 234 WRRIRGEEIKIEAVVGPTIFE----VRAEDLIREGFLAKPRFEIVTYESSMPSFSERYKE 289

Query: 569 --EDVY---DEINLA--------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
             ED+    DE N A        A++G R+L+ V      + L   L +  ++  ++ S 
Sbjct: 290 LYEDMIMNNDERNRAIIRKAIELARRGHRVLIDVRRIEHGKILKGMLEKEGVKAEFLSS- 348

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            K+  R EI+ D + G+  VLV   LL+EG+DIPE   + +    K     S    IQTI
Sbjct: 349 -KSPNRWEILEDFKEGRIPVLVS-TLLKEGVDIPEISAIILAGGGK-----SDIMTIQTI 401

Query: 676 GRAAR 680
           GRA R
Sbjct: 402 GRALR 406


>gi|21231754|ref|NP_637671.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768120|ref|YP_242882.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21113460|gb|AAM41595.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573452|gb|AAY48862.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 1464

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 9/147 (6%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615
           P+ +  +  Q   VY E+   AQQ    L+ V T+RMAE    +L E     RV   H  
Sbjct: 252 PLSVVLSNDQWLQVYAEVAALAQQHRTTLVFVNTRRMAERAARHLGELLGKQRVAAHHGS 311

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R+   R L+ G+  VLV    L  GLDI +  LV  L     G  RS  + +Q  
Sbjct: 312 LSRETRLLAERRLKAGELTVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRA 366

Query: 676 GRAARNVNS--KVILYADTITKSIQLA 700
           GR+   V    K  L+  T  + ++ A
Sbjct: 367 GRSGHAVGGTPKARLFPQTRDELVECA 393


>gi|332363341|gb|EGJ41126.1| DNA helicase RecG [Streptococcus sanguinis SK49]
          Length = 671

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 6/101 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +LT Y +    +V  +H ++K+ E+  I++D + G+ D+LV   ++  G+++P   ++ I
Sbjct: 487 ELTAY-FGHQAQVALLHGKMKSEEKEAIMQDFKEGRTDILVSTTVIEVGVNVPNATVMVI 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           +DAD+ G     + L Q  GR  R    S  +L A+  T+S
Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGSKQSYAVLVANPKTES 582


>gi|221093989|ref|XP_002170248.1| PREDICTED: similar to LOC562123 protein [Hydra magnipapillata]
          Length = 755

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +L+ V +K+ A+ L + L ++ +++   MHS+    ER  I+ +   G FD+LV  N+L 
Sbjct: 441 MLIFVESKKGADLLCDALTQKFSLKCESMHSDKTQSERTLIVNNFLTGSFDILVSTNILG 500

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+P    V + D     F  S    +  +GRA +
Sbjct: 501 RGIDLPNVRQVLLFD-----FPNSIEEYVHQVGRAGQ 532


>gi|218505708|ref|NP_001136206.1| predicted gene, EG668137 [Mus musculus]
          Length = 411

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++  +TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 270 DLYDTLTIT-----QAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370


>gi|332878210|ref|ZP_08445938.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683822|gb|EGJ56691.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 1104

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 24/195 (12%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G+ G+  +  +A +     RP +V+ P+K  +A + ++ +       V +F        P
Sbjct: 31  GLAGASLSAVVANLYTHTHRPLLVLLPDKEESAYVLNDLETLVGEQRVLFF--------P 82

Query: 235 EAYVPRTDTYIEKESSIN-----EQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVE 288
           ++Y  R    IE   + N     E + ++ HS T+ L      IVVS    ++  + + +
Sbjct: 83  DSY--RRPYQIEDTDNANVLLRAEVLHQLSHS-TKPL------IVVSYPEALFEKVITRK 133

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
              Q  +++  GDS+  + L   L   Q+ R D     G F V G  ++IF S   +  +
Sbjct: 134 QLEQNTLKITKGDSLTLEFLNEVLFSYQFNRTDFVTEPGEFSVRGGIVDIF-SFSNNEPY 192

Query: 349 RVSMFGNDIEEISEF 363
           R+  FGN++E I  F
Sbjct: 193 RIEFFGNEVESIRTF 207


>gi|298345580|ref|YP_003718267.1| putative transcription-repair coupling factor [Mobiluncus curtisii
           ATCC 43063]
 gi|298235641|gb|ADI66773.1| possible transcription-repair coupling factor [Mobiluncus curtisii
           ATCC 43063]
          Length = 1165

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 84/172 (48%), Gaps = 14/172 (8%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+AP+   A QL  E   +     VE F  + +    E   PRTDT   +  +++
Sbjct: 47  ERLTVVLAPSTRAATQLARELGAY--TAGVELFPDW-ETLPHERLSPRTDTMARRIWALH 103

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
               R+ H   +  ++     V ++++ +     +  Y    VQ  +GD+ ++  + ++L
Sbjct: 104 ----RVTHPHPQDAVQFLVMPVRAALAPVNA--HIADYPLFTVQ--VGDTYDRDTMAANL 155

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEF 363
           ++  Y+R D+   RG F V G  +++F P+    V  R+ +FG++++ I  F
Sbjct: 156 LRLGYERVDMVGARGQFAVRGGLLDVFSPTSAHPV--RIELFGDEVDTIRAF 205


>gi|315221232|ref|ZP_07863155.1| ATP-dependent DNA helicase RecG [Streptococcus anginosus F0211]
 gi|315189591|gb|EFU23283.1| ATP-dependent DNA helicase RecG [Streptococcus anginosus F0211]
          Length = 690

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 5/89 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H ++K+ E+  I++D + GK D+LV   ++  G+++P   ++ I+DAD+ G     
Sbjct: 517 VALLHGKMKSDEKDAIMQDFKEGKTDILVSTTVIEVGVNVPNATVMLIMDADRFGL---- 572

Query: 669 TSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + L Q  GR  R N  S  +L A+  T+S
Sbjct: 573 SQLHQLRGRVGRGNKQSYAVLVANPKTES 601


>gi|321472714|gb|EFX83683.1| hypothetical protein DAPPUDRAFT_230663 [Daphnia pulex]
          Length = 429

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++      + ++   T+R  + LTE ++ER+  V  MH E++  ER  I+R+ R
Sbjct: 288 DLYDTLSIT-----QAVIFCNTRRKVDWLTEKMHERDFTVSAMHGEMEQKERDVIMREFR 342

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  +LL  G+D+ +  LV
Sbjct: 343 SGSSRVLITTDLLARGIDVQQVSLV 367


>gi|241953571|ref|XP_002419507.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
 gi|223642847|emb|CAX43102.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
          Length = 667

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A + GL I+ T  TKRMA++L +YLY++      +H +    ER + +   + G   +LV
Sbjct: 441 ANENGLTIVFTE-TKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILV 499

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              +   GLDIP    V   D   +         +  IGR  R  N  +
Sbjct: 500 ATAVAARGLDIPNVSHVINYDLPSD-----IDDYVHRIGRTGRAGNVGI 543


>gi|310792073|gb|EFQ27600.1| hypothetical protein GLRG_02744 [Glomerella graminicola M1.001]
          Length = 538

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LT+   +     R++  +   +ER EI+   R G+F VLV   +  EG DIP    V + 
Sbjct: 176 LTQAFRKHGYDARFVTGDTPKVERSEILEAFRKGEFPVLVNCGVFTEGTDIPNIDCVVLA 235

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
                   RS+  L+Q IGR  R    K   +   +  S++  I
Sbjct: 236 RP-----TRSRNLLVQMIGRGMRLHKGKTDCHVIDMVSSLETGI 274


>gi|166714796|gb|ABY88110.1| UvrB [Stenotrophomonas sp. LMG 10857]
          Length = 60

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 34/54 (62%)

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
           +++FP+  +  A R+ +F  ++E+IS F PLTG+ +R +    IY  +HY T R
Sbjct: 2   VDVFPAESDSEAVRIELFEGEVEQISMFDPLTGESLRKMMRYTIYPRTHYATTR 55


>gi|242019168|ref|XP_002430037.1| dicer-1, putative [Pediculus humanus corporis]
 gi|212515099|gb|EEB17299.1| dicer-1, putative [Pediculus humanus corporis]
          Length = 701

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 9/104 (8%)

Query: 611 YMHSEVKTLERI--EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           YM+++   + R   EI++ +  G+ +++   N+L EG+D+P C LV   D     F +  
Sbjct: 379 YMNNDFVDISRKKNEIMKRMASGELNLIFATNILEEGIDLPACNLVISFD-----FPKGY 433

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           +S IQ+ GR ARN NS   +++D   K  +  IDE  R  EK L
Sbjct: 434 SSYIQSRGR-ARNENSIYYIFSDENEKKNEKLIDE-YRDFEKTL 475


>gi|114775697|ref|ZP_01451265.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
           PV-1]
 gi|114553808|gb|EAU56189.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
           PV-1]
          Length = 628

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   +++ E L  R      ++ +VK  +R +I+  L+ GK D++V  ++   
Sbjct: 247 MIIFVRTKTATDEVAERLEARGYAASALNGDVKQSQREQIVNRLKSGKIDIVVATDVAAR 306

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  ++  IL+     K +  +I+
Sbjct: 307 GLDVERISHVINYDIPHDTESYVHR----IGRTGRAGRKGDA--ILFVAPREKRMLYSIE 360

Query: 703 ETTRRREKQLEHNKKHNIN 721
           + T +R +QLE     +IN
Sbjct: 361 KATNQRVEQLEMPTTEDIN 379


>gi|237845101|ref|XP_002371848.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|211969512|gb|EEB04708.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|221501473|gb|EEE27248.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
          Length = 657

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 5/102 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K+  +D+ EYL  + +    +H  +   ER E +R  R G+ DVLVG ++  +
Sbjct: 462 VLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSEAVRAFREGRKDVLVGTDVASK 521

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           GLD P    V   D  KE       + +  IGR  R   + V
Sbjct: 522 GLDFPAIQHVINFDMPKE-----IENYVHRIGRTGRCGRTGV 558


>gi|153006830|ref|YP_001381155.1| type III restriction protein res subunit [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030403|gb|ABS28171.1| type III restriction protein res subunit [Anaeromyxobacter sp.
           Fw109-5]
          Length = 1348

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             G R L+   +    E + ++L  R +RV  +HS+  + +R E +R L  G+ D +  +
Sbjct: 513 HSGTRSLVFCASIAHVEYVQQWLAARGVRVVAVHSQPGSADREEALRKLAAGELDAVCAV 572

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +L  EG+D+P    V +L   +     S    +Q +GR  R    K
Sbjct: 573 DLFNEGVDVPLVDRVVMLRPTE-----SPVVFLQQLGRGLRVAEGK 613


>gi|29830092|ref|NP_824726.1| transcriptional-repair coupling factor [Streptomyces avermitilis
           MA-4680]
 gi|29607202|dbj|BAC71261.1| putative transcriptional-repair coupling factor [Streptomyces
           avermitilis MA-4680]
          Length = 1176

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 92/215 (42%), Gaps = 22/215 (10%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           + + FT+A +     R  + +      A  L +  ++  P + V  + S+ +    E   
Sbjct: 38  AARPFTVAALARDTGRTVLAVTATGREAEDLAAALRSLLPPDRVVEYPSW-ETLPHERLS 96

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQM 293
           PR+DT   + + +     R+ H            +VV+ +  +      G+G +E     
Sbjct: 97  PRSDTVGRRLAVLR----RLAHPRADDPETGPVSVVVAPIRSVLQPQVKGLGDLEP---- 148

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            V L+ G + +   ++ +L    Y R ++   RG F V G  +++FP   E+   RV  +
Sbjct: 149 -VALRTGQTADLGTIVEALSAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRVEFW 206

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           G+D+EEI  F      K+ +  ++++  +  +  P
Sbjct: 207 GDDVEEIRYF------KVADQRSLEVAEHGLWAPP 235


>gi|171677330|ref|XP_001903616.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936733|emb|CAP61391.1| unnamed protein product [Podospora anserina S mat+]
          Length = 652

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 4/101 (3%)

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           +VDP    R    ++ ++  E    + +  RIL+  L K+ A  + ++L  R IRV  +H
Sbjct: 465 VVDP----RGKEQRLLELLREAQKGSAKNDRILVFCLYKKEAVRVEQFLERRGIRVASIH 520

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            +++  +R + +   + G   VLV  ++   GLDIPE  LV
Sbjct: 521 GDLRQDQRTKSLEAFKAGTTSVLVATDVAARGLDIPEVKLV 561


>gi|94993402|ref|YP_601500.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS10750]
 gi|94546910|gb|ABF36956.1| Transcription-repair coupling factor [Streptococcus pyogenes
           MGAS10750]
          Length = 1167

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 97/209 (46%), Gaps = 12/209 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G++GS K   +A      Q+  +V+   +    +L S+  +      V  F  + D
Sbjct: 26  QLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                 ++  +   ++K  S  E +  +R+  ++ +L     + +S +  +     V + 
Sbjct: 84  DVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSGLRTLLPNPDVFTK 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           SQ  +QL +G+  +   L   L+   Y++    I  G F   GD ++I+    +++ +R+
Sbjct: 137 SQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             FG+DI+ I +F+P T +    +E I I
Sbjct: 194 EFFGDDIDSIRQFHPETQKSFEQLEGIFI 222


>gi|154487169|ref|ZP_02028576.1| hypothetical protein BIFADO_01009 [Bifidobacterium adolescentis
           L2-32]
 gi|154085032|gb|EDN84077.1| hypothetical protein BIFADO_01009 [Bifidobacterium adolescentis
           L2-32]
          Length = 1188

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 71/164 (43%), Gaps = 32/164 (19%)

Query: 221 AVEYFVSYYD-----YYQPEAY--------VPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           AVE   S+YD       Q EA+         PR DT   + +       R++H    S L
Sbjct: 87  AVESIRSWYDGDPNDVAQLEAWETLPHERLSPRADTVASRMAVFR----RLKHPEEGSTL 142

Query: 268 ERNDCIVVSSV-----SCIYGIGSVES--YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
                I+V  V       + G+G VE   +SQ       G+ +   E    LV+  Y R 
Sbjct: 143 FGPIRILVMPVRSLIQPVVAGLGDVEPLVFSQ-------GEELPLDEASRKLVENAYTRV 195

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           D+ + RG F V G  I++FP  L     R+  FG++I+ I EF+
Sbjct: 196 DLVMDRGEFAVRGGIIDVFPPTLPHPV-RIEFFGDEIDTIREFH 238


>gi|289667121|ref|ZP_06488196.1| putative helicase [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 831

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 81/182 (44%), Gaps = 33/182 (18%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565
           P  I+ SAT G+      Q +I EQ+        PTG     L +PPV      +R SAR
Sbjct: 239 PQFILRSATIGN-PHAHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618
           +Q   +     +A + GL+ L+   T+ M E LT+YL +       +  R+R        
Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPPRIRAYRGGYLP 354

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER E+ R +R G  D ++  + L  G+DI    LV +      G+  S  +  Q  GRA
Sbjct: 355 TERREVERAMRAGTIDGIISTSALELGVDIGALDLVIL-----NGYPGSVAATWQRFGRA 409

Query: 679 AR 680
            R
Sbjct: 410 GR 411


>gi|257869404|ref|ZP_05649057.1| DEAD-box ATP dependent DNA helicase [Enterococcus gallinarum EG2]
 gi|257803568|gb|EEV32390.1| DEAD-box ATP dependent DNA helicase [Enterococcus gallinarum EG2]
          Length = 448

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 79/155 (50%), Gaps = 14/155 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   ++LT+YL E+ ++V  +H ++   ER  ++R ++  ++  +V  +L   G+DI  
Sbjct: 251 TKSRVDELTDYLKEKGLKVAKIHGDITPRERKRVMRQVQNLEYQYVVATDLAARGIDIEG 310

Query: 651 CGLV--AILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKSIQLAIDETTR 706
              V  A + AD + F       I  +GR  RN    + + LY  +  ++IQ   D   +
Sbjct: 311 VSHVINAEIPADLDFF-------IHRVGRTGRNQLAGTAITLYDPSDEQAIQAIEDLGVK 363

Query: 707 RREKQLEHNK---KHNINPQSVKEKIMEVIDPILL 738
            + K++++ +    ++ N +  +EK  + +DP L+
Sbjct: 364 FQPKEIKNGEIVATYDRNRRQKREKSRDELDPTLI 398


>gi|242398609|ref|YP_002994033.1| Predicted DNA/RNA repair helicase [Thermococcus sibiricus MM 739]
 gi|242265002|gb|ACS89684.1| Predicted DNA/RNA repair helicase [Thermococcus sibiricus MM 739]
          Length = 456

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 8/102 (7%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A+QG R+L+ V        L E   ++ I+  ++ S+  +  R EI    + G+ +VL+ 
Sbjct: 315 AKQGHRVLIDVKRIEHGNVLIEMFKKKGIKAEFLSSQ--SPNRWEIFEKFKNGEINVLIS 372

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LL+EG+DIPE   + +    K     S    IQTIGRA R
Sbjct: 373 -TLLKEGVDIPEISAIILAGGGK-----SDIMTIQTIGRALR 408


>gi|196012648|ref|XP_002116186.1| conserved hypothetical protein [Trichoplax adhaerens]
 gi|190581141|gb|EDV21219.1| conserved hypothetical protein [Trichoplax adhaerens]
          Length = 220

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+R  E LT+ L+ER+  V  MH ++   ER  I+R+ R G   VL+  +LL  G
Sbjct: 90  VIFVNTRRKVEWLTQRLHERDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARG 149

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +D+ +  LV   D        ++ + I  IGR+ R
Sbjct: 150 IDVQQVSLVINYDIPT-----NRENYIHRIGRSGR 179


>gi|318060504|ref|ZP_07979227.1| transcription-repair coupling factor [Streptomyces sp. SA3_actG]
 gi|318077247|ref|ZP_07984579.1| transcription-repair coupling factor [Streptomyces sp. SA3_actF]
          Length = 1178

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 104/242 (42%), Gaps = 23/242 (9%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           D PA +A+ +K      + Q  +    + + F +A +    +R  + +      A  L +
Sbjct: 12  DDPA-LAEAVKAAGDGHRTQADVVGPPAARPFVVAALAREARRTVLAVTATGREAEDLAA 70

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
             +   P   V  F S+ +    E   PR+DT   + + +     R+ H           
Sbjct: 71  ALRTLIPAEGVVEFPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPEADDPEAGPV 125

Query: 272 CIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
            +VV+ +  +      G+G +E      V L+ G SV+ +E++ +L    Y R ++   R
Sbjct: 126 SVVVAPIRSVLQPQVKGLGDLEP-----VALRQGQSVDLQEIVEALAAAAYARVELVEKR 180

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           G F V G  +++FP   E+   RV  +G+++EE+  F      K+ +  +++I  +  + 
Sbjct: 181 GEFAVRGGILDVFPP-TEEHPLRVEFWGDEVEEVRYF------KVADQRSLEIAEHGLWA 233

Query: 387 TP 388
            P
Sbjct: 234 PP 235


>gi|222153644|ref|YP_002562821.1| ATP-dependent DNA helicase [Streptococcus uberis 0140J]
 gi|222114457|emb|CAR43286.1| ATP-dependent DNA helicase [Streptococcus uberis 0140J]
          Length = 671

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + ++L  Y  E+  R+  MH ++K  E+  I++  + G+ D+LV   ++  G+++P   +
Sbjct: 484 LEQELKAYFKEKA-RIALMHGKMKNEEKDTIMQTFKKGQIDILVSTTVIEVGVNVPNATI 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  IL A+  T++
Sbjct: 543 MLIMDADRFGL----SQLHQLRGRVGRGHKQSYAILVANPKTET 582


>gi|331701922|ref|YP_004398881.1| transcription-repair coupling factor [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129265|gb|AEB73818.1| transcription-repair coupling factor [Lactobacillus buchneri NRRL
           B-30929]
          Length = 1178

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 93/210 (44%), Gaps = 15/210 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ GV GS +T  +  +I +  +P +V+  +   A QL ++  N    + +  F     
Sbjct: 26  QLVTGVGGSARTLLIDNLIHSTDKPTVVVVDSLFHADQLVNDLSNLIDDDQLFEF----- 80

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + ++ + +    R  A   L   +  ++V+SVS I   +   + 
Sbjct: 81  --------PVEEMGAAELATSSPEYKAQRVLALDKLASGDPAVIVTSVSGIRRLVPEKKQ 132

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    + L++  + + ++L   L +  Y  Q +    G F + G  ++IFP + +D   R
Sbjct: 133 FQAAKLTLEMDGTYDLEQLKLQLHQMGYVFQKMVAAPGDFSIRGSILDIFPLNHQDPV-R 191

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           +  F  D++ +  F     + I+N+++I +
Sbjct: 192 IDFFDTDVDSMRTFDVSNQRSIKNIKSITV 221



 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y+H ++   +  +I+ D   G++DVLV   ++  G+DIP    + + +AD+ G    
Sbjct: 856 RVGYIHGQMSENQMEDILYDFINGEYDVLVTTTIIETGVDIPNVNTLFVENADRMGL--- 912

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 913 -SQLYQLRGRIGRS 925


>gi|313221011|emb|CBY31843.1| unnamed protein product [Oikopleura dioica]
          Length = 497

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 5/100 (5%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           QG R L+ V TK  A+ L   L    I+   +H + +  +R + I DL+  +  VLV  +
Sbjct: 317 QGKRTLIFVATKIFADSLGSMLVGDGIKATTIHGDRQQRDREQAINDLKANRMHVLVATD 376

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +   G+DI +  +V   D     F +   S I  IGR AR
Sbjct: 377 VAARGIDIDDVEVVINFD-----FPKELESYIHRIGRTAR 411


>gi|289662227|ref|ZP_06483808.1| putative helicase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 831

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 33/182 (18%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565
           P  I+ SAT G+      Q +I EQ+        PTG     L +PPV      +R SAR
Sbjct: 239 PQFILCSATIGN-PHAHAQALIEEQVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618
           +Q   +     +A + GL+ L+   T+ M E LT+YL +       +  R+R        
Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPPRIRAYRGGYLP 354

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER E+ R +R G  D ++  + L  G+DI    +V +      G+  S  +  Q  GRA
Sbjct: 355 TERREVERAMRAGTIDGIISTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 409

Query: 679 AR 680
            R
Sbjct: 410 GR 411


>gi|320010606|gb|ADW05456.1| Protein of unknown function DUF3427 [Streptomyces flavogriseus ATCC
           33331]
          Length = 1044

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           AR  V+ V D++       +R L   ++   A  + ++     +  R +  E    ER +
Sbjct: 543 ARLVVQAVIDKVTDPGS--MRALGFCVSVAHAHFMADFFQRSGLNARALSGETPRHERKK 600

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            + +LR G+  V+  ++L  EGLDIP+   + +L         S T  +Q +GR  R   
Sbjct: 601 ALDELRSGQLQVIFSVDLFNEGLDIPDVDTLLLLRPTS-----SATVFLQQLGRGLRRTE 655

Query: 684 SKVIL 688
            K +L
Sbjct: 656 DKAVL 660


>gi|315426340|dbj|BAJ47980.1| helicase-associated endonuclease for fork-structured DNA
           [Candidatus Caldiarchaeum subterraneum]
 gi|315426365|dbj|BAJ48004.1| helicase-associated endonuclease for fork-structured DNA
           [Candidatus Caldiarchaeum subterraneum]
          Length = 694

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 14/117 (11%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKT------LERIEIIRDLRLGKFDV 635
           RI++    +  AE +   L E   R R      E KT       E+I ++++ R G F++
Sbjct: 365 RIMVFANIRNTAEVIVSRLTELGYRARMFIGKGEGKTGPKMTQQEQIRLLKEFREGVFNI 424

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
           LV  ++  EGLDIPECG V   +    G        IQ  GR  R +  KV IL A+
Sbjct: 425 LVATSIGEEGLDIPECGYVIFYEPAISGI-----RYIQRRGRTGRKLPGKVTILIAE 476


>gi|269795126|ref|YP_003314581.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269097311|gb|ACZ21747.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
          Length = 614

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+  AE++   L ER I    +  +V   +R +I+  LR G  DVLV  ++   GLD+  
Sbjct: 278 TRGAAEEVGSALIERGISAATISGDVAQKDREKIVERLRAGALDVLVATDVAARGLDVDR 337

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            GLV   D   E       + +  IGR  R   + V L
Sbjct: 338 IGLVVNFDIPGE-----PEAYVHRIGRTGRAGRTGVAL 370


>gi|308473123|ref|XP_003098787.1| CRE-VBH-1 protein [Caenorhabditis remanei]
 gi|308268083|gb|EFP12036.1| CRE-VBH-1 protein [Caenorhabditis remanei]
          Length = 686

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 5/99 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TKR A +L  +L  + IR   +H ++K +ER   +   R G+F +LV   +   
Sbjct: 431 VLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLEMFRSGQFPILVATAVAAR 490

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           GLDIP   +  +++ D  G        +  IGR  R  N
Sbjct: 491 GLDIPN--VRHVINYDLPG---DSDEYVHRIGRTGRCGN 524


>gi|119715169|ref|YP_922134.1| transcription-repair coupling factor [Nocardioides sp. JS614]
 gi|119535830|gb|ABL80447.1| transcription-repair coupling factor [Nocardioides sp. JS614]
          Length = 1224

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 28/214 (13%)

Query: 166 SREKVQLLLGVTG--SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +R  V   L +TG  + + F +A ++ A +    V A ++  A  L     +      V 
Sbjct: 34  ARGGVVPALDLTGPEALRPFVVAGLVRAGRSVLAVTATSR-EAEDLVEALGDLLDPARVA 92

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH--SATRSLLERNDC-------IV 274
           Y+ S+ +    E   PR+DT   + + +     R+ H  +AT +  + +         +V
Sbjct: 93  YYPSW-ETLPHERLSPRSDTVGRRLAVLR----RLCHPGAATDAATDSSAGTPNGPIDVV 147

Query: 275 VSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           V+ V  +      G+G +E      V+L+ GD+    +++  L    Y R D+   RG F
Sbjct: 148 VAPVRSVLQPQVKGLGDLEP-----VELEPGDTAPLDDVVRRLAAAAYTRVDLVEKRGEF 202

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            V G  +++FP   E+   RV ++G+D+EEI  F
Sbjct: 203 AVRGGIVDVFPP-TEEHPLRVELWGDDVEEIRSF 235


>gi|302519736|ref|ZP_07272078.1| transcription-repair coupling factor [Streptomyces sp. SPB78]
 gi|302428631|gb|EFL00447.1| transcription-repair coupling factor [Streptomyces sp. SPB78]
          Length = 1178

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 104/242 (42%), Gaps = 23/242 (9%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           D PA +A+ +K      + Q  +    + + F +A +    +R  + +      A  L +
Sbjct: 12  DDPA-LAEAVKAAGDGHRTQADVVGPPAARPFVVAALAREARRTVLAVTATGREAEDLAA 70

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
             +   P   V  F S+ +    E   PR+DT   + + +     R+ H           
Sbjct: 71  ALRTLIPAEGVVEFPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPEADDPEAGPV 125

Query: 272 CIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
            +VV+ +  +      G+G +E      V L+ G SV+ +E++ +L    Y R ++   R
Sbjct: 126 SVVVAPIRSVLQPQVKGLGDLEP-----VALRQGQSVDLQEIVEALAAAAYARVELVEKR 180

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           G F V G  +++FP   E+   RV  +G+++EE+  F      K+ +  +++I  +  + 
Sbjct: 181 GEFAVRGGILDVFPP-TEEHPLRVEFWGDEVEEVRYF------KVADQRSLEIAEHGLWA 233

Query: 387 TP 388
            P
Sbjct: 234 PP 235


>gi|162417900|ref|YP_001604581.1| Type III restriction enzyme, res subunit [Yersinia pestis Angola]
 gi|162350872|gb|ABX84821.1| Type III restriction enzyme, res subunit [Yersinia pestis Angola]
          Length = 519

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +  E  +    GL  +  V  KR  + L E + E  ++V +++ E     R   +  L
Sbjct: 355 EAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLSSL 414

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             G+ DVL+G  +L  G+D+P  G V +    K     ++  + Q +GR  R
Sbjct: 415 AAGRIDVLIGSTILDVGVDVPSVGAVILGGGGK-----AEVEMRQRVGRGLR 461


>gi|300121126|emb|CBK21507.2| unnamed protein product [Blastocystis hominis]
          Length = 518

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RIL+ V TKR A+ L  YL  ++ +   +H +    +R + +   +L +  +LV  ++  
Sbjct: 391 RILIFVETKRKADILQRYLTTQHFQAASIHGDRSQADREDALSAFKLNRVQILVATDVAA 450

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            GLDIP+  LV   D  +     +    +  IGR  R  N+ V +
Sbjct: 451 RGLDIPDVSLVINYDTPQ-----NIEDYVHRIGRTGRAGNTGVAI 490


>gi|262281636|ref|ZP_06059405.1| transcription-repair coupling factor [Streptococcus sp. 2_1_36FAA]
 gi|262262090|gb|EEY80787.1| transcription-repair coupling factor [Streptococcus sp. 2_1_36FAA]
          Length = 1167

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 109/237 (45%), Gaps = 19/237 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QLL+G++GS K   +A  ++  Q+  +VM      A +L S+  +      V      Y+
Sbjct: 30  QLLMGLSGSTKALAIASALDEHQK-ILVMTSGYSEAEKLSSDLISLLGEEKV------YN 82

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC-IVVSSVSCI-YGIGSVE 288
           +   +A  P  +     +  I  +I      A   LL+ N+  I+V+++S     + +  
Sbjct: 83  FLADDA--PMAEFIFSSQEKIYTRI-----GALNFLLDDNESGILVTNLSASRLFLPNPN 135

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA- 347
                I++LK+G       L++ L+K  Y+++     +G F + GD ++IF    + ++ 
Sbjct: 136 ELKSSIIELKVGQEYNLDTLVNFLIKIGYRKESQVFNQGEFSLRGDILDIFDK--DSISP 193

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           +R+  FG++I+ I  F   +   I N+  + I+  +  +        A K I+E +K
Sbjct: 194 YRLEFFGDEIDGIRIFDSESQTSIENLNQVLIHPANDILLSDEDYLRAQKKIEEAVK 250



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 10/101 (9%)

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           + +++AE L E + E NI   Y+H ++  +     + D   G++DVLV   ++  G+DIP
Sbjct: 837 IEQKVAE-LKELIPEANIG--YVHGQMSEIRLENTLIDFINGEYDVLVTTTIIETGVDIP 893

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
               + I +AD  G     ++L Q  GR  R   S  I YA
Sbjct: 894 NANTLFIENADHMGL----STLYQLRGRVGR---SNRIAYA 927


>gi|239930800|ref|ZP_04687753.1| transcriptional-repair coupling factor [Streptomyces ghanaensis
           ATCC 14672]
 gi|291439165|ref|ZP_06578555.1| transcriptional-repair coupling factor [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342060|gb|EFE69016.1| transcriptional-repair coupling factor [Streptomyces ghanaensis
           ATCC 14672]
          Length = 1185

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 102/238 (42%), Gaps = 22/238 (9%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           A+A+ +       ++ + L    + + F +A +     RP + +      A  L +  ++
Sbjct: 15  ALAEAISAASDGHRMHVDLVGPPAARPFAVAALARETGRPVLAVTATGREAEDLAAALRS 74

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
             P   V  + S+ +    E   PR+DT   + + +     R+ H            +VV
Sbjct: 75  LLPPEGVVEYPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPRLDDPETGPVSVVV 129

Query: 276 SSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
           + V  +      G+G +E      V L+ G S + +E++ +L    Y R ++   RG F 
Sbjct: 130 APVRSVLQPQVKGLGDLEP-----VSLRTGQSADLEEVVEALAAAAYARVELVEKRGEFA 184

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           V G  +++FP   E+   R+  +G+D+EEI  F      K+ +  ++++  +  +  P
Sbjct: 185 VRGGILDVFPP-TEEHPLRIEFWGDDVEEIRYF------KVADQRSLEVAEHGLWAPP 235


>gi|322705100|gb|EFY96688.1| ATP-dependent RNA helicase dbp3 [Metarhizium anisopliae ARSEF 23]
          Length = 596

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q+  RIL+  L K+ A  +  +L  + IRV  +H ++K  +R   +   + G+  VLV  
Sbjct: 430 QKNDRILVFCLYKKEATRVENFLSRKGIRVGGIHGDLKQEQRTRSLEAFKTGQTPVLVAT 489

Query: 640 NLLREGLDIPECGLV 654
           ++   GLDIPE  LV
Sbjct: 490 DVAARGLDIPEVKLV 504


>gi|71066639|ref|YP_265366.1| ATP-dependent DNA helicase RecG [Psychrobacter arcticus 273-4]
 gi|71039624|gb|AAZ19932.1| probable DNA helicase [Psychrobacter arcticus 273-4]
          Length = 808

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 7/112 (6%)

Query: 588 TVLTKRMAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +VL  + AE   E L ER +IR+  +H ++K  ++  I++  + G+ D+L+   ++  G+
Sbjct: 611 SVLDAQAAEATYEDLSERLDIRIGLVHGKMKGADKQAIMQAFKAGQLDLLIATTVIEVGV 670

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKS 696
           D+P   L+ I +A++ G     + L Q  GR  R       V+LY   ++++
Sbjct: 671 DVPNASLMVIENAERLGL----SQLHQLRGRVGRGSTKSYCVLLYQKPLSET 718


>gi|93007226|ref|YP_581663.1| ATP-dependent DNA helicase RecG [Psychrobacter cryohalolentis K5]
 gi|92394904|gb|ABE76179.1| ATP-dependent DNA helicase RecG [Psychrobacter cryohalolentis K5]
          Length = 782

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 7/112 (6%)

Query: 588 TVLTKRMAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +VL  + AE   E L ER +IR+  +H ++K  ++  I++  + G+ D+L+   ++  G+
Sbjct: 585 SVLDAQAAEATYEDLSERLDIRIGLVHGKMKGADKQAIMQAFKAGQLDLLIATTVIEVGV 644

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKS 696
           D+P   L+ I +A++ G     + L Q  GR  R       V+LY   ++++
Sbjct: 645 DVPNASLMVIENAERLGL----SQLHQLRGRVGRGSTKSYCVLLYQKPLSET 692


>gi|73662868|ref|YP_301649.1| primosomal protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495383|dbj|BAE18704.1| primosomal protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 802

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 102/232 (43%), Gaps = 23/232 (9%)

Query: 3   KKTRSFPKKDSRI--QSISTRVDDLDYFSFEEKQLEVDKTMVADAMRR-IRSEAGKHRKN 59
           K T+ F  +D+    ++++ + D   +++F+  Q   D T +A  +++ I SE     +N
Sbjct: 112 KYTKVFSIEDTNALPETLAGKFDSSGHYAFKAAQQNDDLTQIAPLLKQGIVSEVTLLSQN 171

Query: 60  AAKRMLIHQRENTASKGEFQSQSSISMSEKQTRE-------ISEQ---TMTPSVQALARL 109
             K+    QR     +G F   S ++  EK  ++       + EQ    +   ++A+   
Sbjct: 172 VNKK---KQRAICVVEG-FNYDSVLNSLEKSKKQYELYAFLLDEQHRIVLLKDIEAMGYS 227

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169
             S + L++ G  +       +     +   F+     H + DQ  A   + + IH+ E+
Sbjct: 228 KSSVDTLIRKG--FVEKYDAVVERDPFETRVFEQDVKQHLTSDQQRAFEAISEKIHAHEQ 285

Query: 170 VQLLL-GVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFF 217
              LL GVTGSGKT    + IE    + R A+++ P   L  Q+   FK  F
Sbjct: 286 CTYLLHGVTGSGKTEVYLQTIEEVLNLNRQAMMLVPEIALTPQMVLRFKRRF 337



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 15/102 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+R+ E L E   E     R +  +V T  R     +++ D   GK D+L+G  ++ +GL
Sbjct: 562 TQRVEELLQEAFQE----ARIIRMDVDTTSRKGAHEKLLNDFGSGKGDILLGTQMIAKGL 617

Query: 647 DIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           D P   LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 618 DFPNITLVGVLNADTMLNLPDFRASERTYQLLTQVAGRAGRH 659


>gi|227824817|ref|ZP_03989649.1| transcription-repair coupling factor [Acidaminococcus sp. D21]
 gi|226905316|gb|EEH91234.1| transcription-repair coupling factor [Acidaminococcus sp. D21]
          Length = 1093

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 93/209 (44%), Gaps = 22/209 (10%)

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR------PAIVMAPNKILAAQLYSEFKN 215
           +GI + +K    L VTG   +   A  + A+Q       P I++ P +     L  E   
Sbjct: 17  EGIQAWQKASGPLTVTGLSGSIK-AGFLCALQTFGKASDPLIILTPRREDVRLLRRELTP 75

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV- 274
           F+P  A+            E Y P    + E ++  NE++   R +A   +L++   I+ 
Sbjct: 76  FYPDQAMR-----------ELY-PLGLIHGEIDTR-NEEVMAERAAALEMILKKEAAIIF 122

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           V++ + I  +   +   +  + L  GD   + +L+  LVK+ Y+R D     G F V GD
Sbjct: 123 VTAEAAIQKLPRPDGLLRDSITLTHGDEKNRDKLIERLVKEGYERTDQVETLGQFSVRGD 182

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            ++IFP + +D   R+  F   I+ I  F
Sbjct: 183 ILDIFPINAKDPV-RIEWFDETIDAIRRF 210


>gi|159468652|ref|XP_001692488.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158278201|gb|EDP03966.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 599

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 598 LTEY-LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +T+Y L  RN+ V  +H  +  LER  I+   R G F  LV  +L   GLD+P+C
Sbjct: 495 VTKYKLEARNMEVSVLHGRLSRLERSNIVAAFRAGTFRALVATDLAARGLDLPDC 549


>gi|55821544|ref|YP_139986.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55737529|gb|AAV61171.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
          Length = 528

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ IIRD + G+ D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|187957004|gb|AAI58084.1| EG434080 protein [Mus musculus]
          Length = 411

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++  +TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 270 DLYDTLTIT-----QAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYDLPN-----NRELYIHRIGRSGR 370


>gi|16082814|ref|NP_395368.1| hypothetical protein YPMT1.30 [Yersinia pestis CO92]
 gi|31795353|ref|NP_857805.1| hypothetical protein Y1022 [Yersinia pestis KIM]
 gi|40787954|ref|NP_857667.2| hypothetical protein YPKMT029 [Yersinia pestis KIM]
 gi|45478621|ref|NP_995477.1| hypothetical protein YP_pMT033 [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108793565|ref|YP_636715.1| hypothetical protein YPA_MT0033 [Yersinia pestis Antiqua]
 gi|108793765|ref|YP_636603.1| hypothetical protein YPN_MT0033 [Yersinia pestis Nepal516]
 gi|145597224|ref|YP_001154687.1| hypothetical protein YPDSF_4060 [Yersinia pestis Pestoides F]
 gi|149192767|ref|YP_001293998.1| hypothetical protein YPE_4284 [Yersinia pestis CA88-4125]
 gi|165939465|ref|ZP_02228012.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166012067|ref|ZP_02232965.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214439|ref|ZP_02240474.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167402354|ref|ZP_02307819.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422776|ref|ZP_02314529.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167427120|ref|ZP_02318873.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466691|ref|ZP_02331395.1| hypothetical protein YpesF_02105 [Yersinia pestis FV-1]
 gi|229896960|ref|ZP_04512119.1| putative helicase [Yersinia pestis Pestoides A]
 gi|229897748|ref|ZP_04512903.1| putative helicase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229900301|ref|ZP_04515436.1| putative helicase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904825|ref|ZP_04519935.1| putative helicase [Yersinia pestis Nepal516]
 gi|270491012|ref|ZP_06208085.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294502021|ref|YP_003565758.1| hypothetical protein YPZ3_pMT0029 [Yersinia pestis Z176003]
 gi|3883023|gb|AAC82683.1| unknown [Yersinia pestis KIM 10]
 gi|5834715|emb|CAB55212.1| hypothetical protein YPMT1.30 [Yersinia pestis CO92]
 gi|45357274|gb|AAS58668.1| hypothetical protein YP_pMT033 [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108777829|gb|ABG20347.1| hypothetical protein YPN_MT0033 [Yersinia pestis Nepal516]
 gi|108782112|gb|ABG16169.1| hypothetical protein YPA_MT0033 [Yersinia pestis Antiqua]
 gi|145212992|gb|ABP42397.1| hypothetical protein YPDSF_4060 [Yersinia pestis Pestoides F]
 gi|148872425|gb|ABR14914.1| hypothetical protein YPMT1.30 [Yersinia pestis CA88-4125]
 gi|165912653|gb|EDR31283.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165989001|gb|EDR41302.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204387|gb|EDR48867.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958269|gb|EDR55290.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048246|gb|EDR59654.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167053871|gb|EDR63703.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229678140|gb|EEO74246.1| putative helicase [Yersinia pestis Nepal516]
 gi|229686660|gb|EEO78741.1| putative helicase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229693329|gb|EEO83379.1| putative helicase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229699996|gb|EEO88036.1| putative helicase [Yersinia pestis Pestoides A]
 gi|262363915|gb|ACY60634.1| hypothetical protein YPD4_pMT0029 [Yersinia pestis D106004]
 gi|262364072|gb|ACY64408.1| hypothetical protein YPD8_pMT0030 [Yersinia pestis D182038]
 gi|270334993|gb|EFA45771.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294352492|gb|ADE66548.1| hypothetical protein YPZ3_pMT0029 [Yersinia pestis Z176003]
 gi|320017555|gb|ADW01125.1| putative helicase [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 519

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +  E  +    GL  +  V  KR  + L E + E  ++V +++ E     R   +  L
Sbjct: 355 EAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLSSL 414

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             G+ DVL+G  +L  G+D+P  G V +    K     ++  + Q +GR  R
Sbjct: 415 AAGRIDVLIGSTILDVGVDVPSVGAVILGGGGK-----AEVEMRQRVGRGLR 461


>gi|55823472|ref|YP_141913.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|55739457|gb|AAV63098.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 528

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ IIRD + G+ D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|309797392|ref|ZP_07691785.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|308119016|gb|EFO56278.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
          Length = 519

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +  E  L  Q  L  +  V  KR  + L E + E  ++V +++ E     R   +  L
Sbjct: 355 EAIVREALLYKQHSLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLNSL 414

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             G+ DVL+G  +L  G+D+P  G V +    K     ++  + Q +GR  R
Sbjct: 415 ASGEIDVLIGSTILDVGVDVPSVGAVILAGGGK-----AEVEMRQRVGRGLR 461


>gi|25396065|pir||A88708 protein C01B10.1 [imported] - Caenorhabditis elegans
          Length = 956

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 31/148 (20%)

Query: 583 LRILLTVLTKRMAE----DLTEYLYERNIRVRYMH--------------SEVKTLERIEI 624
            R ++ V TK+ A+     L + L+E  I+  +M               S+ K +E++++
Sbjct: 620 FRAIIFVRTKKEADFLNYVLNDRLHELGIKSDWMSGQKKSTASSADISASKQKQMEKLKM 679

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
             D   G+  +LV  ++  EGLDIPEC LV      K  +  ++T+ +Q  GR AR  NS
Sbjct: 680 FAD---GENQILVSTSVAEEGLDIPECSLVI-----KYNYATNETAHVQRRGR-ARARNS 730

Query: 685 KVILYADTITKSIQLAIDETTRRREKQL 712
           K +L    IT SI L + E+    ++ L
Sbjct: 731 KCVL----ITNSIALHVQESNNLAKENL 754


>gi|52788081|ref|YP_093909.1| hypothetical protein pG8786_029 [Yersinia pestis]
 gi|52538010|emb|CAG27435.1| hypothetical protein [Yersinia pestis]
          Length = 519

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +  E  +    GL  +  V  KR  + L E + E  ++V +++ E     R   +  L
Sbjct: 355 EAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLSSL 414

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             G+ DVL+G  +L  G+D+P  G V +    K     ++  + Q +GR  R
Sbjct: 415 AAGRIDVLIGSTILDVGVDVPSVGAVILGGGGK-----AEVEMRQRVGRGLR 461


>gi|268565781|ref|XP_002639546.1| C. briggsae CBR-VBH-1 protein [Caenorhabditis briggsae]
          Length = 638

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 5/99 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TKR A +L  +L  + IR   +H ++K +ER   +   R G+F +LV   +   
Sbjct: 386 VLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLEMFRSGQFPILVATAVAAR 445

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           GLDIP    V   D   +         +  IGR  R  N
Sbjct: 446 GLDIPNVRHVVNYDLPGD-----SDEYVHRIGRTGRCGN 479


>gi|316968374|gb|EFV52655.1| eukaryotic initiation factor 4A-III [Trichinella spiralis]
          Length = 970

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD I ++     + ++   T+   E L E + E N  V  +H E+   +R E++R  R
Sbjct: 281 DLYDSITIS-----QAVVFCNTRHKVEWLDEKMKESNFTVGAIHGEMDQKDRNEVVRKFR 335

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            G + VL+  ++   GLDIP   LV   D   ++E +L         IGR+ R
Sbjct: 336 DGIYRVLISTDVWSRGLDIPGVSLVINYDVPTNREAYL-------HRIGRSGR 381


>gi|152991099|ref|YP_001356821.1| ATP-dependent DNA helicase RecG [Nitratiruptor sp. SB155-2]
 gi|151422960|dbj|BAF70464.1| ATP-dependent DNA recombinase RecG [Nitratiruptor sp. SB155-2]
          Length = 597

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 130 SINNHSKDITFFQMQTDYHPSGDQPAAI----AQLLKGIHSREKVQLLLGVTGSGKTFTM 185
           SI  +++D   F     + P+ DQ  AI      L KG+ +R   ++++G  GSGK+  M
Sbjct: 201 SIAQYAQDPEPFLSTLPFDPTSDQKRAIYDIYEDLKKGVAAR---RVIVGDVGSGKSLVM 257

Query: 186 -AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
            A          I+MAP  ILA QLY E K F P+
Sbjct: 258 FATAFMNYPNKTILMAPTTILADQLYHEAKKFLPN 292


>gi|302391430|ref|YP_003827250.1| type III restriction protein res subunit [Acetohalobium arabaticum
           DSM 5501]
 gi|302203507|gb|ADL12185.1| type III restriction protein res subunit [Acetohalobium arabaticum
           DSM 5501]
          Length = 735

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 18/120 (15%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT----LERIEIIRDLRLG 631
           NLA Q+ L    ++   R    + EY  E NIR   +HS        +ER E +  L  G
Sbjct: 353 NLAGQRTLGFCASINHARY---MAEYFNENNIRAVCVHSSSDQREYFMERKEAVEKLEAG 409

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLR---SKTSLIQTIGRAARNVNSKVIL 688
             DV+  +++  EG+DIP    V         FLR   S    +Q +GR  R    K  L
Sbjct: 410 DIDVIFAVDIFNEGVDIPALDTVL--------FLRPTESYVVFLQQLGRGLREYKEKEYL 461


>gi|21465183|gb|AAM54703.1| vasa-like [Sparus aurata]
          Length = 395

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  YL +  +    +H + +  ER + + D R GK  V+V  ++  
Sbjct: 214 RTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQREREQALADFRSGKCPVMVATSVAA 273

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDIP+   V   D  KE         +  IGR  R  N+
Sbjct: 274 RGLDIPDVQHVVNFDLPKE-----IDEYVHRIGRTGRCGNT 309


>gi|300811569|ref|ZP_07092053.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497429|gb|EFK32467.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 453

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+M ++L +YL ++ ++V  +H  +   ER   +R++R G++  +V  +L   G+D+P 
Sbjct: 253 TKQMVDELADYLTKQGLKVAKIHGGITERERKRTLREVRAGQYQYVVASDLAARGIDLPG 312

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +  K+        +I  IGR  RN
Sbjct: 313 VNLVINYEIPKD-----LEFIIHRIGRTGRN 338


>gi|326776076|ref|ZP_08235341.1| type III restriction protein res subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656409|gb|EGE41255.1| type III restriction protein res subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 551

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 13/184 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERN---IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           R ++   T   AE + E L   +   +   Y+HS +    R  ++ + RLG+  V+  ++
Sbjct: 372 RAIVFCQTIEHAEHMAELLSVSDPQWVNASYLHSGLAKRHRNILLNEFRLGRVPVITCVD 431

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQL 699
           +  EG+D+P+  L+A L         S+   +Q +GR  R + N K +   D +T   + 
Sbjct: 432 VFNEGVDVPDVNLIAFLRVTH-----SRRIFVQQLGRGLRLSPNKKALKVLDFVTDIRRA 486

Query: 700 AIDETTRR--REKQLEHNK-KHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
           A     RR     + EH +  H    +   E +  ++D + ++DAA    + D  +L   
Sbjct: 487 AAALNLRRTLEATEAEHLELPHTSRIEFQDETVGSLMD-MWIQDAADLETAADEVRLQFP 545

Query: 757 KKKG 760
             KG
Sbjct: 546 MPKG 549


>gi|328882973|emb|CCA56212.1| Transcription-repair coupling factor [Streptomyces venezuelae ATCC
           10712]
          Length = 1221

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 85/201 (42%), Gaps = 24/201 (11%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFF-PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           RP + +      A  L +  ++   P   VEY    ++    E   PR+DT   + + + 
Sbjct: 95  RPVLAVTATGREAEDLAAALRSLLDPDTVVEY--PSWETLPHERLSPRSDTVGRRLAVLR 152

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKE 307
               R+ H            +VV+ +  +      G+G +E      V L+ G + +  E
Sbjct: 153 ----RLAHPRDDDPAAGPVSVVVAPIRSVLQPQVKGLGDLEP-----VALRSGQTADLNE 203

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           ++  L    Y R ++   RG F V G  +++FP   E+   R+  +G+D+EEI  F    
Sbjct: 204 IVEGLAAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRIEFWGDDVEEIRYF---- 258

Query: 368 GQKIRNVETIKIYANSHYVTP 388
             K+ +  ++++  +  +  P
Sbjct: 259 --KVADQRSLEVAEHGLWAPP 277


>gi|309364627|emb|CAP24933.2| CBR-VBH-1 protein [Caenorhabditis briggsae AF16]
          Length = 692

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 5/99 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TKR A +L  +L  + IR   +H ++K +ER   +   R G+F +LV   +   
Sbjct: 440 VLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLEMFRSGQFPILVATAVAAR 499

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           GLDIP    V   D   +         +  IGR  R  N
Sbjct: 500 GLDIPNVRHVVNYDLPGD-----SDEYVHRIGRTGRCGN 533


>gi|149240601|ref|XP_001526175.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013500|sp|A5DZE6|DED1_LODEL RecName: Full=ATP-dependent RNA helicase DED1
 gi|146450298|gb|EDK44554.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 664

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 7/116 (6%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D +N A  +GL I+ T  TKRMA++L ++LY++      +H +    ER + +   + 
Sbjct: 423 ILDLLN-ANSEGLTIVFTE-TKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKS 480

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           G+  +LV   +   GLDIP    V   D   +         +  IGR  R  N  +
Sbjct: 481 GQAPILVATAVAARGLDIPNVSHVINYDLPSD-----IDDYVHRIGRTGRAGNVGI 531


>gi|116200971|ref|XP_001226297.1| hypothetical protein CHGG_08370 [Chaetomium globosum CBS 148.51]
 gi|118575173|sp|Q2GUI4|DBP3_CHAGB RecName: Full=ATP-dependent RNA helicase DBP3
 gi|88176888|gb|EAQ84356.1| hypothetical protein CHGG_08370 [Chaetomium globosum CBS 148.51]
          Length = 566

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 9/122 (7%)

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
           GS EL+    I +EQ +    +VDP    R    ++ ++  E    + +  RIL+  L K
Sbjct: 412 GSTELQA--NIRIEQKVE---VVDP----RGKEQRLLELLKEAQKGSAKNDRILVFCLYK 462

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           + A  + + L  R IRV  +H +++  +R   +   + G   VLV  ++   GLDIPE  
Sbjct: 463 KEAVRVEQNLERRGIRVCSIHGDLRQDQRTRSLESFKAGTTSVLVATDVAARGLDIPEVK 522

Query: 653 LV 654
           LV
Sbjct: 523 LV 524


>gi|325924438|ref|ZP_08185967.1| ATP dependent helicase, Lhr family [Xanthomonas gardneri ATCC
           19865]
 gi|325545086|gb|EGD16411.1| ATP dependent helicase, Lhr family [Xanthomonas gardneri ATCC
           19865]
          Length = 1485

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 10/157 (6%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615
           P+ +  +  Q   VY E+   AQQ    L+ V T+RMAE    +L +     RV   H  
Sbjct: 253 PLSVVMSNDQWLQVYAEVAALAQQHRTTLVFVNTRRMAERAARHLGDLLGKQRVAAHHGS 312

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R+   + L+ G+  VLV    L  GLDI +  LV  L     G  RS  + +Q  
Sbjct: 313 LSRETRLLAEQRLKAGELTVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRA 367

Query: 676 GRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709
           GRA   V    K  L+  T  + ++  A+ ++ RR E
Sbjct: 368 GRAGHAVGGTPKARLFPQTRDELVECAALLDSVRRGE 404


>gi|309810312|ref|ZP_07704150.1| putative ATP-dependent DNA helicase RecG [Dermacoccus sp. Ellin185]
 gi|308435740|gb|EFP59534.1| putative ATP-dependent DNA helicase RecG [Dermacoccus sp. Ellin185]
          Length = 729

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  MH  +   E+ +++R    G+ DVLV   ++  G+D+P   ++ I+DAD+ G  
Sbjct: 544 GLRIGLMHGRLPAEEKDDVMRRFGAGEVDVLVATTVIEVGVDVPNASMIVIVDADRFGL- 602

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R  +  + L
Sbjct: 603 ---SQLHQLRGRVGRGEHGGLCL 622


>gi|209525471|ref|ZP_03274011.1| primosomal protein N' [Arthrospira maxima CS-328]
 gi|209494151|gb|EDZ94466.1| primosomal protein N' [Arthrospira maxima CS-328]
          Length = 875

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 16/145 (11%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+R+A++LT    E R IR     +  K   RI ++      + D+LVG  +L +GLD+ 
Sbjct: 638 TQRVAQELTRLFPELRFIRFDSDTTRTKNAHRI-LLTQFANREADLLVGTQMLTKGLDLD 696

Query: 650 ECGLVAILDADKEGFL---------RSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQL 699
             GLV I+ AD  G L         R+  +L+Q  GRA R N   +VIL   T    +  
Sbjct: 697 SVGLVGIVSAD--GLLHLSDYRASERAFQTLLQVAGRAGRGNDPGQVILQTYTPEHPVVE 754

Query: 700 AIDETTRRR--EKQLEHNKKHNINP 722
           A+     +   E +L+H  + N  P
Sbjct: 755 AVRNHAYQSFVETELQHRSELNYPP 779


>gi|260812834|ref|XP_002601125.1| hypothetical protein BRAFLDRAFT_214468 [Branchiostoma floridae]
 gi|229286416|gb|EEN57137.1| hypothetical protein BRAFLDRAFT_214468 [Branchiostoma floridae]
          Length = 370

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+ V TKR A+ L  YL +       +H +    ER E + D R G+  VLV  ++  
Sbjct: 215 RVLVFVETKRNADFLASYLSQSGFPTTSIHGDRLQKEREEALMDFRTGRAPVLVATSVAA 274

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADT 692
            GLDIP+  +V   D        S    +  IGR  R  N+ K I + D+
Sbjct: 275 RGLDIPKVMVVVNYD-----LPSSIDEYVHRIGRTGRVGNTGKAISFYDS 319


>gi|162329501|ref|YP_001604300.1| putative helicase [Acidianus filamentous virus 8]
 gi|157310618|emb|CAJ31696.1| putative helicase [Acidianus filamentous virus 8]
          Length = 564

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 589 VLTKRM--AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           V+ +R+  A  L+E   +  I   ++ S  K  ER+  I +L+ GK   L+  +L  EGL
Sbjct: 433 VIVRRISTARKLSELFNKNGISSDFVTSMTKLEERMRKIENLKNGKIQTLIATSLADEGL 492

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           DIP   L+ +L   K     S+  L+Q IGR  R
Sbjct: 493 DIPNLRLIVLLTQGK-----SRIKLVQRIGRVMR 521


>gi|333026450|ref|ZP_08454514.1| putative transcriptional-repair coupling factor [Streptomyces sp.
           Tu6071]
 gi|332746302|gb|EGJ76743.1| putative transcriptional-repair coupling factor [Streptomyces sp.
           Tu6071]
          Length = 1181

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 104/242 (42%), Gaps = 23/242 (9%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           D PA +A+ +K      + Q  +    + + F +A +    +R  + +      A  L +
Sbjct: 15  DDPA-LAEAVKAAGDGHRTQADVVGPPAARPFVVAALAREARRTVLAVTATGREAEDLAA 73

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
             +   P   V  F S+ +    E   PR+DT   + + +     R+ H           
Sbjct: 74  ALRTLIPTEGVVEFPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPEADDPEAGPV 128

Query: 272 CIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
            +VV+ +  +      G+G +E      V L+ G SV+ +E++ +L    Y R ++   R
Sbjct: 129 SVVVAPIRSVLQPQVKGLGDLEP-----VALRQGQSVDLQEIVEALAAAAYARVELVEKR 183

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           G F V G  +++FP   E+   RV  +G+++EE+  F      K+ +  +++I  +  + 
Sbjct: 184 GEFAVRGGILDVFPP-TEEHPLRVEFWGDEVEEVRYF------KVADQRSLEIAEHGLWA 236

Query: 387 TP 388
            P
Sbjct: 237 PP 238


>gi|326772340|ref|ZP_08231625.1| transcription-repair coupling factor [Actinomyces viscosus C505]
 gi|326638473|gb|EGE39374.1| transcription-repair coupling factor [Actinomyces viscosus C505]
          Length = 492

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 83/213 (38%), Gaps = 18/213 (8%)

Query: 151 GDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLY 210
           G +PA +A +  G    ++V        +G     A   E    P +V+      A +  
Sbjct: 85  GARPAVLAAMALGEEGVQRV--------AGGDAPAAGSAEVSGTPLLVVTATGREAEETA 136

Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270
              +++ P   V    ++      E   PR DT  ++ S +            R L+   
Sbjct: 137 LALRSYLPAEDVAVMPAWETLPH-ERLSPRADTVAQRLSVLRRLAHPEEGGVIRVLIVPV 195

Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             ++      I G+G +E      VQL  G +V   E    L    Y R D+   RG + 
Sbjct: 196 RALLAP---VIAGLGELEP-----VQLAPGLTVGLDETARRLEAAAYTRVDMVESRGEYA 247

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           V G  +++FP   E    RV  FG++I+E+S F
Sbjct: 248 VRGGILDVFPPS-EPRPVRVDFFGDEIDEVSSF 279


>gi|302551963|ref|ZP_07304305.1| transcription-repair coupling factor [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469581|gb|EFL32674.1| transcription-repair coupling factor [Streptomyces
           viridochromogenes DSM 40736]
          Length = 1177

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 93/215 (43%), Gaps = 22/215 (10%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           + + F +A +     RP + +      A  L +  ++  P   V  + S+ +    E   
Sbjct: 38  AARPFAVAGLARDTGRPVLAVTATGREAEDLAAALRSLLPPEEVVEYPSW-ETLPHERLS 96

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQM 293
           PR+DT   + + +     R+ H            +VV+ V  +      G+G +E     
Sbjct: 97  PRSDTVGRRLAVLR----RLAHPRPDDPETGPVSVVVAPVRSVLQPQVKGLGDLEP---- 148

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            V L+ G S + +E++ +L    Y R ++   RG F V G  +++FP   E+   RV  +
Sbjct: 149 -VSLRTGQSADLEEIVDALAAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRVEFW 206

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           G+D+EEI  F      K+ +  ++++  +  +  P
Sbjct: 207 GDDVEEIRYF------KVADQRSLEVAEHGLWAPP 235


>gi|188991250|ref|YP_001903260.1| ATP-dependent DNA helicase Lhr, probable [Xanthomonas campestris
           pv. campestris str. B100]
 gi|167733010|emb|CAP51208.1| ATP-dependent DNA helicase Lhr, probable [Xanthomonas campestris
           pv. campestris]
          Length = 1464

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 57/129 (44%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615
           P+ +  +  Q   VY E+   AQQ    L+ V T+RMAE    +L E     RV   H  
Sbjct: 252 PLSVVLSNDQWLQVYAEVAALAQQHRTTLVFVNTRRMAERAARHLGELLGKQRVAAHHGS 311

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R+   R L+ G+  VLV    L  GLDI +  LV  L     G  RS  + +Q  
Sbjct: 312 LSRETRLLAERRLKAGELTVLVATASLELGLDIGDVDLVCQL-----GSSRSIATFLQRA 366

Query: 676 GRAARNVNS 684
           GR+   V  
Sbjct: 367 GRSGHAVGG 375


>gi|15807648|ref|NP_295347.1| RNA helicase [Deinococcus radiodurans R1]
          Length = 560

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 9/104 (8%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR A++L   L  R +    +H ++   +R   +   R G+  VLV  ++   GLDIPE
Sbjct: 130 TKREADELANELIHRGLESEALHGDLAQTQRERALGAFRSGRVGVLVATDVAARGLDIPE 189

Query: 651 CGLVAI--LDADKEGFL-RSKTSLIQTIGRAARNVNSKVILYAD 691
             LV    L  D E ++ RS  +     GRA R   + +I+Y D
Sbjct: 190 VDLVVQYHLPQDPESYVHRSGRT-----GRAGRT-GTAIIMYGD 227


>gi|242012580|ref|XP_002427009.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212511247|gb|EEB14271.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 538

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 5/107 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L +    + L+ V  KR  + +  +L E+N     +H +    ER E +RD + GK D+L
Sbjct: 376 LESNGSSKCLVFVEQKRTTDFIATFLCEKNFPATSIHGDRDQREREEALRDFKTGKMDIL 435

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           V  ++   GLDI     V   D  K     +    +  IGR  R  N
Sbjct: 436 VATSVAARGLDIKNVAHVVNFDLPK-----TIDEYVHRIGRTGRVGN 477


>gi|170099095|ref|XP_001880766.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644291|gb|EDR08541.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 498

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V TKR+A+D+T+YL +       +H + +  ER  ++ + + G+  +L+  ++  
Sbjct: 309 KVLIFVATKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLGEFKAGRSPILIATDVAS 368

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ + G V   D     F  +    I  IGR  R
Sbjct: 369 RGLDVKDVGYVINYD-----FPNNCEDYIHRIGRTGR 400


>gi|332365100|gb|EGJ42865.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK355]
          Length = 1167

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 99/227 (43%), Gaps = 14/227 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E   +  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F++  D    E      +    +  ++N  ID  +     + +  +  
Sbjct: 71  LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNIAASKL 129

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++   +           +    + LK+G   +   L+  L +  YKR    + +G + + 
Sbjct: 130 LLPDPID----------FKTTNINLKVGQEYDLNNLVKMLSRSGYKRVSQVLSQGEYSLR 179

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           GD ++IF     D  +R+  FG++I+ I  F P     I NVE+I I
Sbjct: 180 GDILDIFERS-ADSPYRLEFFGDEIDGIRIFNPENQTSIENVESILI 225



 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 7/101 (6%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  +     + D   G++D+LV   ++  G+DIP    + + +AD  G     
Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL---- 908

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           ++L Q  GR  R   S  I YA  + +  ++  + + +R E
Sbjct: 909 STLYQLRGRVGR---SNRIAYAYLMYRPDKILTEVSEKRLE 946


>gi|281209492|gb|EFA83660.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 880

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           Q+GL   +L+ V +K  A++L + L   NI V  +HS+    +R +I+   R GK  VL+
Sbjct: 622 QKGLEPPVLIFVQSKERAQELFQELIFDNINVDVIHSDRTQFQRDKIVEKFRTGKIWVLI 681

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+  G+D      V   D     F ++  S +  IGR  R
Sbjct: 682 CTELMARGMDFKGVNYVINFD-----FPKTVASYVHRIGRTGR 719


>gi|116051004|ref|YP_790170.1| transcription-repair coupling factor [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|313108292|ref|ZP_07794324.1| transcription-repair coupling factor [Pseudomonas aeruginosa 39016]
 gi|115586225|gb|ABJ12240.1| transcription-repair coupling factor [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310880826|gb|EFQ39420.1| transcription-repair coupling factor [Pseudomonas aeruginosa 39016]
          Length = 1148

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 60/301 (19%), Positives = 121/301 (40%), Gaps = 43/301 (14%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   + +R  +++  +   A +L  E + F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRFFAPDLPVLHFPDWETLPYDV 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P   +      I +  +   Q+ +++H            +VV   + ++ +       
Sbjct: 81  FSPHQDI------ISQRIAALYQLPQLKHG----------VLVVPISTALHRLAPTRFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++ + +   L    Y+  D     G F V G  I++FP   E + +R+ 
Sbjct: 125 GSSLVLDVGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-LPFRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P T + I  VE+I++     +    P    A+   +           
Sbjct: 184 LFDDEIETLRTFDPETQRSIDKVESIRLLPAREF----PLNKEAVTGFR----------- 228

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             GR  E   ++ R     + L +  +   IE Y          E   TLF+Y+P+D+ +
Sbjct: 229 --GRFRERFDVDYRRCPIYQDLASGLTPSGIEYYLPLFF-----EETATLFDYLPQDTQV 281

Query: 472 F 472
           F
Sbjct: 282 F 282



 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 30/103 (29%)

Query: 605 RNIRVRYMHSEVKTLERI-----EIIRDLRLG---------------------KFDVLVG 638
           R  +V Y+H+EVKT+E+      E++ + R+G                     +F+VLV 
Sbjct: 809 RGGQVYYLHNEVKTIEKCARDLAELVPEARIGIGHGQMHERELEQVMSDFYHKRFNVLVA 868

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             ++  G+D+P    + I  ADK G       L Q  GR  R+
Sbjct: 869 STIIETGIDVPSANTILIERADKFGL----AQLHQLRGRVGRS 907


>gi|296388503|ref|ZP_06877978.1| transcription-repair coupling factor [Pseudomonas aeruginosa PAb1]
          Length = 1148

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 60/301 (19%), Positives = 121/301 (40%), Gaps = 43/301 (14%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   + +R  +++  +   A +L  E + F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRFFAPDLPVLHFPDWETLPYDV 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P   +      I +  +   Q+ +++H            +VV   + ++ +       
Sbjct: 81  FSPHQDI------ISQRIAALYQLPQLKHG----------VLVVPISTALHRLAPTRFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++ + +   L    Y+  D     G F V G  I++FP   E + +R+ 
Sbjct: 125 GSSLVLDVGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-LPFRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P T + I  VE+I++     +    P    A+   +           
Sbjct: 184 LFDDEIETLRTFDPETQRSIDKVESIRLLPAREF----PLNKEAVTGFR----------- 228

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             GR  E   ++ R     + L +  +   IE Y          E   TLF+Y+P+D+ +
Sbjct: 229 --GRFRERFDVDYRRCPIYQDLASGLTPSGIEYYLPLFF-----EETATLFDYLPQDTQV 281

Query: 472 F 472
           F
Sbjct: 282 F 282



 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 30/103 (29%)

Query: 605 RNIRVRYMHSEVKTLERI-----EIIRDLRLG---------------------KFDVLVG 638
           R  +V Y+H+EVKT+E+      E++ + R+G                     +F+VLV 
Sbjct: 809 RGGQVYYLHNEVKTIEKCARDLAELVPEARIGIGHGQMHERELEQVMSDFYHKRFNVLVA 868

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             ++  G+D+P    + I  ADK G       L Q  GR  R+
Sbjct: 869 STIIETGIDVPSANTILIERADKFGL----AQLHQLRGRVGRS 907


>gi|157150453|ref|YP_001451365.1| transcription-repair coupling factor [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075247|gb|ABV09930.1| transcription-repair coupling factor [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 1167

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 108/237 (45%), Gaps = 19/237 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QLL+G++GS K   +A  ++  Q+  +VM      A +L S+  +      V      Y+
Sbjct: 30  QLLMGLSGSTKALAIASALDEHQK-ILVMTSGYSEAEKLSSDLISLLGEEKV------YN 82

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC-IVVSSVSCI-YGIGSVE 288
           +   +A  P  +     +  I       R  A   LL+ N+  I+V+++S     + +  
Sbjct: 83  FLADDA--PMAEFIFSSQEKI-----YARLGALNFLLDDNESGILVTNLSASRLFLPNPN 135

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA- 347
                I++LK+G       L++ L+K  Y+++     +G F + GD ++IF    + ++ 
Sbjct: 136 ELKSSILELKVGQEYSLDSLVNFLIKIGYRKESQVFNQGEFSLRGDILDIFDK--DSISP 193

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           +R+  FG++I+ I  F   +   I N+  + I+  +  +        A K I+E +K
Sbjct: 194 YRLEFFGDEIDGIRIFDSESQTSIENLNQVLIHPANDILLADEDYLRAQKKIEEAVK 250


>gi|73965819|ref|XP_850033.1| PREDICTED: similar to Probable ATP-dependent helicase LGP2 (Protein
           D11Lgp2 homolog) isoform 2 [Canis familiaris]
 gi|73965821|ref|XP_860532.1| PREDICTED: similar to Probable ATP-dependent helicase LGP2 (Protein
           D11Lgp2 homolog) isoform 3 [Canis familiaris]
 gi|73965823|ref|XP_860567.1| PREDICTED: similar to Probable ATP-dependent helicase LGP2 (Protein
           D11Lgp2 homolog) isoform 4 [Canis familiaris]
          Length = 678

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+IR  R+G  ++LV  ++  EGLDIP+C +V      + G L ++ S++Q  GRA
Sbjct: 422 EVIRKFRVGTLNLLVATSVAEEGLDIPQCNVVV-----RYGLLSNEISMVQARGRA 472


>gi|28894918|ref|NP_801268.1| transcription-repair coupling factor [Streptococcus pyogenes SSI-1]
 gi|28810163|dbj|BAC63101.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes SSI-1]
          Length = 1167

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 97/209 (46%), Gaps = 12/209 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G++GS K   +A      Q+  +V+   +    +L S+  +      V  F  + D
Sbjct: 26  QLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                 ++  +   ++K  S  E +  +R+  ++ +L     + +S +  +     V + 
Sbjct: 84  DVAAAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSGLRTLLPNPDVFTK 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           SQ  +QL +G+  +   L   L+   Y++    I  G F   GD ++I+    +++ +R+
Sbjct: 137 SQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             FG+DI+ I +F+P T +    +E + I
Sbjct: 194 EFFGDDIDSIRQFHPETQKSFEQLEGVFI 222


>gi|326505994|dbj|BAJ91236.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 685

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 5/132 (3%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           VE R+ R+ + D+ +   + +Q     IL+ V TK+ A+ L E+LY     V  +H +  
Sbjct: 438 VEDRNKRSYLLDLLNATPIRSQPAESLILVFVETKKGADSLEEFLYSNGYPVTSIHGDRT 497

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQ 673
             ER + ++  R G   VLV   +   GLDIP    V   D  +D E ++    +T  + 
Sbjct: 498 QREREDALKSFRSGNTPVLVATAVAARGLDIPHVTHVINYDLPSDVEEYVHRIGRTGRMG 557

Query: 674 TIGRAARNVNSK 685
            +G A    N K
Sbjct: 558 NLGLATSFFNDK 569


>gi|326485005|gb|EGE09015.1| dicer-like protein 2 [Trichophyton equinum CBS 127.97]
          Length = 1417

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DL+ GK ++LV  ++L EG+D+  C LV   D  K+  LR   S +Q  GRA +  + 
Sbjct: 518 IDDLKSGKKNLLVATSVLEEGIDVSACDLVVCFDPPKQ--LR---SFVQRRGRARKQSSK 572

Query: 685 KVILYA--DTITKSIQLAIDETTRRR 708
            VI YA  DT T     A+++  + R
Sbjct: 573 FVIFYAEDDTATHKDWEAMEDIMKER 598


>gi|305433019|ref|ZP_07402175.1| DNA helicase RecG [Campylobacter coli JV20]
 gi|304443720|gb|EFM36377.1| DNA helicase RecG [Campylobacter coli JV20]
          Length = 604

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 9/92 (9%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-A 186
           ++I N  KD+ F         + DQ  A+  + K +HS+E K ++++G  G GKT  +  
Sbjct: 213 FNIANWLKDLPF-------SLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLG 265

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
             +    + AI+MAP  ILA QLY E K   P
Sbjct: 266 AALMVYPKQAILMAPTSILANQLYEEAKKLLP 297


>gi|302389589|ref|YP_003825410.1| transcriptional regulator, TrmB [Thermosediminibacter oceani DSM
           16646]
 gi|302200217|gb|ADL07787.1| transcriptional regulator, TrmB [Thermosediminibacter oceani DSM
           16646]
          Length = 732

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 12/97 (12%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQ 208
           +Q  A+ +++K + +  K  LL G+TGSGKT    K IE   A  + A+V+ P   L  Q
Sbjct: 202 EQARALEEIIKNMEAERKPVLLFGITGSGKTEVYIKAIERLLARGKRALVLVPEISLTPQ 261

Query: 209 LYSEFKNFFP------HNAV---EYFVSYYDYYQPEA 236
           +   F N FP      H+ +   E F+ +Y  Y+ +A
Sbjct: 262 MMERFYNRFPGRVAMIHSGLSRSERFLEWYRIYKGDA 298


>gi|107102552|ref|ZP_01366470.1| hypothetical protein PaerPA_01003616 [Pseudomonas aeruginosa PACS2]
          Length = 1148

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 60/301 (19%), Positives = 121/301 (40%), Gaps = 43/301 (14%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   + +R  +++  +   A +L  E + F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRFFAPDLPVLHFPDWETLPYDV 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P   +      I +  +   Q+ +++H            +VV   + ++ +       
Sbjct: 81  FSPHQDI------ISQRIAALYQLPQLKHG----------VLVVPISTALHRLAPTRFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++ + +   L    Y+  D     G F V G  I++FP   E + +R+ 
Sbjct: 125 GSSLVLDVGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-LPFRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P T + I  VE+I++     +    P    A+   +           
Sbjct: 184 LFDDEIETLRTFDPETQRSIDKVESIRLLPAREF----PLNKEAVTGFR----------- 228

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             GR  E   ++ R     + L +  +   IE Y          E   TLF+Y+P+D+ +
Sbjct: 229 --GRFRERFDVDYRRCPIYQDLASGLTPSGIEYYLPLFF-----EETATLFDYLPQDTQV 281

Query: 472 F 472
           F
Sbjct: 282 F 282



 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 30/103 (29%)

Query: 605 RNIRVRYMHSEVKTLERI-----EIIRDLRLG---------------------KFDVLVG 638
           R  +V Y+H+EVKT+E+      E++ + R+G                     +F+VLV 
Sbjct: 809 RGGQVYYLHNEVKTIEKCARDLAELVPEARIGIGHGQMHERELEQVMSDFYHKRFNVLVA 868

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             ++  G+D+P    + I  ADK G       L Q  GR  R+
Sbjct: 869 STIIETGIDVPSANTILIERADKFGL----AQLHQLRGRVGRS 907


>gi|15598198|ref|NP_251692.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
           PAO1]
 gi|218890799|ref|YP_002439663.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
           LESB58]
 gi|9949103|gb|AAG06390.1|AE004725_3 transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
           PAO1]
 gi|218771022|emb|CAW26787.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
           LESB58]
          Length = 1148

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 60/301 (19%), Positives = 121/301 (40%), Gaps = 43/301 (14%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   + +R  +++  +   A +L  E + F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRFFAPDLPVLHFPDWETLPYDV 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P   +      I +  +   Q+ +++H            +VV   + ++ +       
Sbjct: 81  FSPHQDI------ISQRIAALYQLPQLKHG----------VLVVPISTALHRLAPTRFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++ + +   L    Y+  D     G F V G  I++FP   E + +R+ 
Sbjct: 125 GSSLVLDVGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-LPFRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P T + I  VE+I++     +    P    A+   +           
Sbjct: 184 LFDDEIETLRTFDPETQRSIDKVESIRLLPAREF----PLNKEAVTGFR----------- 228

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             GR  E   ++ R     + L +  +   IE Y          E   TLF+Y+P+D+ +
Sbjct: 229 --GRFRERFDVDYRRCPIYQDLASGLTPSGIEYYLPLFF-----EETATLFDYLPQDTQV 281

Query: 472 F 472
           F
Sbjct: 282 F 282



 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 30/103 (29%)

Query: 605 RNIRVRYMHSEVKTLERI-----EIIRDLRLG---------------------KFDVLVG 638
           R  +V Y+H+EVKT+E+      E++ + R+G                     +F+VLV 
Sbjct: 809 RGGQVYYLHNEVKTIEKCARDLAELVPEARIGIGHGQMHERELEQVMSDFYHKRFNVLVA 868

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             ++  G+D+P    + I  ADK G       L Q  GR  R+
Sbjct: 869 STIIETGIDVPSANTILIERADKFGL----AQLHQLRGRVGRS 907


>gi|332978670|gb|EGK15368.1| ATP-dependent RNA helicase RhlE [Psychrobacter sp. 1501(2011)]
          Length = 519

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 6/123 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   TKR  E L + L E+  +  ++H ++   +R  II D++ GK  +LV  ++   G
Sbjct: 284 IIFAATKRSCETLAKSLKEQGHKASFLHGDLPQAKRTRIINDVKAGKISILVATDVAARG 343

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-AIDET 704
           +D+   G+  + + D     R     +  IGR+ R   + + +   +I    QL AI+  
Sbjct: 344 IDV--SGITHVFNYD---LPRQTEDYVHRIGRSGRAGRTGIAINICSIDDRPQLDAINRY 398

Query: 705 TRR 707
            +R
Sbjct: 399 LKR 401


>gi|296283911|ref|ZP_06861909.1| transcription-repair coupling factor [Citromicrobium bathyomarinum
           JL354]
          Length = 1163

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 83/224 (37%), Gaps = 39/224 (17%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQL 209
           S  QP   A L +G                 +   MA +  A  + A+ +AP+       
Sbjct: 9   SAKQPLTFANLARG----------------SQPLVMADLARAAHKRAVFVAPDD------ 46

Query: 210 YSEFKNFFPHNAVEYFVSYYDYYQPEAYV---PRTDTYIEKESSINEQIDRMRHSATRSL 266
                     +A+        Y+ PE  V   P  D      +S    I   R SA   L
Sbjct: 47  ----------SAMRAVADAARYFAPELSVIELPAWDCLPYDRASPALSISTQRLSALHRL 96

Query: 267 LERNDC---IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                    +V ++ + +  + +     + + +LK G  +  + L   L KQ Y R D  
Sbjct: 97  QAEKGAPQLLVTTANAVVQRMLTPFRIREAVRELKPGVHIGHESLTQLLQKQGYSRTDTV 156

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           I  G F V G   +IFPS LE    R+  FG+++E +  F P T
Sbjct: 157 IDAGEFAVRGSIFDIFPSGLEQ-GLRLDFFGDELESLRLFDPNT 199


>gi|118469068|ref|YP_886743.1| ATP-dependent DNA helicase RecG [Mycobacterium smegmatis str. MC2
           155]
 gi|118170355|gb|ABK71251.1| ATP-dependent DNA helicase RecG [Mycobacterium smegmatis str. MC2
           155]
          Length = 753

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 11/96 (11%)

Query: 602 LYER-------NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           LYER        +R+  MH  +   E+ E++   R G+ DVLV   ++  G+D+P   ++
Sbjct: 561 LYERLRNGPLEGLRLGLMHGRLSGDEKDEVMSRFRAGEIDVLVCTTVIEVGVDVPNSTVM 620

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            ++DAD+ G     + L Q  GR  R  +  + L A
Sbjct: 621 VVMDADRFGI----SQLHQLRGRIGRGQHPSLCLLA 652


>gi|221487611|gb|EEE25843.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
          Length = 685

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 5/107 (4%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G + L+   TKR  + L   L  R +R   +H + +  ER  I+ D R G  ++L+  ++
Sbjct: 536 GQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQRERDRILHDFRKGDCEILLATDV 595

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              GLDI +   V   D  K     +  S I  IGR  R  N    +
Sbjct: 596 ASRGLDIQDVKFVINYDVPK-----NIESYIHRIGRTGRAGNKGTAI 637


>gi|237830475|ref|XP_002364535.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|211962199|gb|EEA97394.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|221507408|gb|EEE33012.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
          Length = 685

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 5/107 (4%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G + L+   TKR  + L   L  R +R   +H + +  ER  I+ D R G  ++L+  ++
Sbjct: 536 GQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQRERDRILHDFRKGDCEILLATDV 595

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              GLDI +   V   D  K     +  S I  IGR  R  N    +
Sbjct: 596 ASRGLDIQDVKFVINYDVPK-----NIESYIHRIGRTGRAGNKGTAI 637


>gi|86211175|gb|ABC87271.1| vasa-like protein [Macrobrachium rosenbergii]
          Length = 710

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D + GK  +LV  ++  
Sbjct: 532 RTMVFVETKRQADFIATFLCQEELPTTSIHGDREQREREQALADFKAGKCPILVATSVAA 591

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILY 689
            GLDIPE   V   D  K     +    +  IGR  R  N+   V  Y
Sbjct: 592 RGLDIPEVQHVVNFDLPK-----NIDEYVHRIGRTGRCGNIGRAVSFY 634


>gi|320547460|ref|ZP_08041746.1| DNA helicase RecG [Streptococcus equinus ATCC 9812]
 gi|320447805|gb|EFW88562.1| DNA helicase RecG [Streptococcus equinus ATCC 9812]
          Length = 671

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L+ Y ++R   V  MH  +K  E+  I++D +  K  VLV   ++  G+++P   ++ 
Sbjct: 486 EELSAY-FDRTAEVSLMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMI 544

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITKS 696
           I+DAD+ G     + L Q  GR  R    S  IL A+  T++
Sbjct: 545 IMDADRFGL----SQLHQLRGRVGRGQKQSYAILVANPKTQT 582


>gi|282158103|ref|NP_001164095.1| ATP-dependent RNA helicase p62 [Tribolium castaneum]
          Length = 549

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 5/115 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           T++ ++  EI    + G +I++ V TK+  E +T  +         MH +    ER  ++
Sbjct: 346 TKLNNLLQEIGNNGEPGAKIIIFVETKKKVESITRTIRRYGWPAVCMHGDKSQQERDFVL 405

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ R GK  +L+  ++   GLD+   G+  +++ D   +  S    I  IGR  R
Sbjct: 406 REFRNGKSSILIATDVAARGLDVE--GIKYVINYD---YPNSSEDYIHRIGRTGR 455


>gi|327398488|ref|YP_004339357.1| primosomal protein N' [Hippea maritima DSM 10411]
 gi|327181117|gb|AEA33298.1| primosomal protein N' [Hippea maritima DSM 10411]
          Length = 638

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 7/72 (9%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIG 676
           I+ DLR GK D+L+G  +L +G DI + GLV ++D +    +       R+ + ++QT G
Sbjct: 444 IVNDLRAGKIDILIGTQMLSKGHDISQIGLVVVVDFESLFVMPDFRAEERAVSLIMQTAG 503

Query: 677 RAARNVNSKVIL 688
           R+ R    +VI+
Sbjct: 504 RSGRKEPGRVII 515


>gi|308498555|ref|XP_003111464.1| hypothetical protein CRE_03767 [Caenorhabditis remanei]
 gi|308241012|gb|EFO84964.1| hypothetical protein CRE_03767 [Caenorhabditis remanei]
          Length = 405

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 9/112 (8%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + +L   T+R  + LT+ + E N  V  MH +++  +R E++++ R
Sbjct: 261 DLYDTLTIT-----QAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFR 315

Query: 630 LGKFDVLVGINLLREGLDIPECGLVA-ILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  LV+ +++ D      ++   I  IGR+ R
Sbjct: 316 AGTTRVLISTDVWARGLDVPQVSLVSNVINYD---LPNNRELYIHRIGRSGR 364


>gi|170071047|ref|XP_001869798.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167866996|gb|EDS30379.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 222

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER EI+++ R
Sbjct: 81  DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 135

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 136 SGQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 181


>gi|78048183|ref|YP_364358.1| ATP-dependent DNA helicase Lhr [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036613|emb|CAJ24304.1| ATP-dependent DNA helicase Lhr [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 1464

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 10/157 (6%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615
           P+ +  +  Q   VY ++   AQQ    L+ V T+RMAE    +L +     RV   H  
Sbjct: 252 PLSVVMSNDQWLQVYADVAALAQQHRTTLVFVNTRRMAERAARHLGDLLGKQRVSAHHGS 311

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R+  ++ L+ G   VLV    L  GLDI +  LV  L     G  RS  + +Q  
Sbjct: 312 LSRETRLLAVQRLKAGDLTVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRA 366

Query: 676 GRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709
           GR+   V    K  L+  T  + ++  A+ ++ RR E
Sbjct: 367 GRSGHKVGGTPKARLFPQTRDELVECAALLDSIRRGE 403


>gi|166714762|gb|ABY88095.1| UvrB [Stenotrophomonas sp. LMG 10991]
          Length = 60

 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 34/51 (66%)

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
           ++FP+  +  A R+ +F  ++E+I+ F PLTG+ +RN++   +Y  +HY T
Sbjct: 3   DVFPADRDSEALRIELFDGEVEKITLFDPLTGETLRNMQRFTVYPKTHYAT 53


>gi|166714734|gb|ABY88090.1| UvrB [Pseudoxanthomonas dokdonensis]
          Length = 61

 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 34/54 (62%)

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
           +++FP+  +  A R+ +F  ++E++S F PLTG+ +R +    IY  +HY T R
Sbjct: 2   VDVFPAESDSEAVRIELFDGEVEQLSMFDPLTGETLRRLPRFTIYPKNHYATTR 55


>gi|254235976|ref|ZP_04929299.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
           C3719]
 gi|126167907|gb|EAZ53418.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
           C3719]
          Length = 1148

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/301 (19%), Positives = 121/301 (40%), Gaps = 43/301 (14%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   + +R  +++  +   A +L  E + F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRFFAPDLPVLHFPDWETLPYDV 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P   +      I +  +   Q+ +++H            +VV   + ++ +       
Sbjct: 81  FSPHQDI------ISQRIAALYQLPQLKHG----------VLVVPISTALHRLAPTRFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++ + +   L    Y+  D     G F V G  I++FP   E + +R+ 
Sbjct: 125 GSSLVLDVGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-LPFRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P T + I  VE+I++     +    P    A+   +           
Sbjct: 184 LFDDEIETLRTFDPETQRSIDKVESIRLLPAREF----PLNKEAVTGFR----------- 228

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             GR  E   ++ R     + L +  +   IE Y          E   TLF+Y+P+D+ +
Sbjct: 229 --GRFRERFDVDYRRCPIYQDLASGLTPSGIEYYLPLFF-----EETATLFDYLPQDTQV 281

Query: 472 F 472
           F
Sbjct: 282 F 282



 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 30/103 (29%)

Query: 605 RNIRVRYMHSEVKTLERI-----EIIRDLRLG---------------------KFDVLVG 638
           R  +V Y+H+EVKT+E+      E++ + R+G                     +F+VLV 
Sbjct: 809 RGGQVYYLHNEVKTIEKCARDLAELVPEARIGIGHGQMHERELEQVMSDFYHKRFNVLVA 868

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             ++  G+D+P    + I  ADK G       L Q  GR  R+
Sbjct: 869 STIIETGIDVPSANTILIERADKFGL----AQLHQLRGRVGRS 907


>gi|301773535|ref|XP_002922173.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like
           [Ailuropoda melanoleuca]
 gi|281344530|gb|EFB20114.1| hypothetical protein PANDA_011148 [Ailuropoda melanoleuca]
          Length = 684

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+IR  R+G  ++LV  ++  EGLDIP+C +V      + G L ++ S++Q  GRA
Sbjct: 422 EVIRKFRVGTLNLLVATSVAEEGLDIPQCNVVV-----RYGLLTNEISMVQARGRA 472


>gi|229604971|ref|YP_002875670.1| putative helicase [Lactococcus phage P087]
 gi|227825954|gb|ACP41678.1| putative helicase [Lactococcus phage P087]
          Length = 508

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L + L +  I  +++ S+ K  ER + ++D +  +  VL+G+N+  EG D+P C  + + 
Sbjct: 237 LAKMLQDSGITAQFVSSKSKKRERTQYVKDFKEHRTQVLIGVNIFIEGFDVPACDSMYMF 296

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
                   RS +   Q+IGR  R    K I
Sbjct: 297 RP-----TRSVSVWFQSIGRVLRLAEGKTI 321


>gi|262283179|ref|ZP_06060946.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
 gi|262261431|gb|EEY80130.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
          Length = 523

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|166714732|gb|ABY88089.1| UvrB [Stenotrophomonas koreensis]
          Length = 61

 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 34/54 (62%)

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
           +++FP+  +  A R+ +F  ++E++S F PLTG+ +R +    IY  +HY T R
Sbjct: 2   VDVFPAESDSEAVRIELFDGEVEQLSMFDPLTGETLRKLPRYTIYPKNHYATTR 55


>gi|171779290|ref|ZP_02920261.1| hypothetical protein STRINF_01138 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282346|gb|EDT47773.1| hypothetical protein STRINF_01138 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 671

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 14/118 (11%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + EDL+EY +     V  MH  +K  E+  I++D +  K  VLV   ++  G+++P   +
Sbjct: 484 LHEDLSEY-FADCANVALMHGRMKNEEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATI 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREK 710
           + I+DAD+ G     + L Q  GR  R +  S  IL A+  T        ET ++R K
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAILVANPKT--------ETGKKRMK 588


>gi|153806359|ref|ZP_01959027.1| hypothetical protein BACCAC_00620 [Bacteroides caccae ATCC 43185]
 gi|149131036|gb|EDM22242.1| hypothetical protein BACCAC_00620 [Bacteroides caccae ATCC 43185]
          Length = 420

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 9/107 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   +++T+ L    + V  MHS+++ ++R  ++ D + G+ ++LV  +++ 
Sbjct: 246 RVIIFASSKIKVKEVTKALKSMKLNVGEMHSDLEQVQREAVMHDFKAGRINILVATDIVA 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+DI +  LV   D   D E +       +  IGR AR  N  V L
Sbjct: 306 RGIDIDDIRLVINFDVPHDSEDY-------VHRIGRTARANNDGVAL 345


>gi|229083372|ref|ZP_04215723.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-44]
 gi|228699937|gb|EEL52571.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-44]
          Length = 1176

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 138/334 (41%), Gaps = 51/334 (15%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+    K QL+ G+  S ++  MA + +  ++  +V+  N   A ++Y +  + 
Sbjct: 14  IQSIINGLEEGLKEQLVSGMATSSRSLLMAALYKKTKQSQLVVTHNLFQAQKVYEDLVSL 73

Query: 217 FPHNAV------EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270
                V      E   S      PE    R +                     R  +   
Sbjct: 74  LGEQDVWLYPVNELIASEIGVASPELKAQRIEVL------------------NRLAMGEQ 115

Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             IVV        +   E + Q  +++ +G  ++ + LL +L    Y+R+ +    G F 
Sbjct: 116 GIIVVPVAGLRRFLPIKELWKQKQIEISLGQEIDLEALLHTLHHIGYERKSMVEAPGEFS 175

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + G  ++I+P   E++ +R+  F  +++ I  F         +V   +       V   P
Sbjct: 176 LRGGILDIYPL-TEELPFRIEFFDTEVDSIRLF---------DVGEQRSQDKKDSVRFGP 225

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE---------QRITYDLEMLETTGSCQS 441
              T   +  EELK+ +  LE EG +   QRL          + +++++E+L+   + Q+
Sbjct: 226 A--TEFLFSNEELKLGVERLE-EGLMKTMQRLSDDKIKTAVLETVSHEIEVLK---NGQT 279

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           IE   +YL+     +   +L +Y+PE+ ++ +DE
Sbjct: 280 IEQMFKYLSIFY--KEHASLIDYLPENGVVILDE 311



 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G    
Sbjct: 860 RVTYAHGKMNEGELESVMLSFLDGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL--- 916

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 917 -SQLYQLRGRVGRS 929


>gi|150864373|ref|XP_001383156.2| ATP-dependent RNA helicase of DEAD box family [Scheffersomyces
           stipitis CBS 6054]
 gi|149385629|gb|ABN65127.2| ATP-dependent RNA helicase of DEAD box family [Scheffersomyces
           stipitis CBS 6054]
          Length = 616

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A   GL I+ T  TKRMA++L ++LY++      +H +    ER + +   + G   +LV
Sbjct: 391 AGDAGLTIIFTE-TKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGAAPILV 449

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              +   GLDIP    V   D   +         +  IGR  R  N  +
Sbjct: 450 ATAVAARGLDIPNVAHVINYDLPSD-----IDDYVHRIGRTGRAGNVGI 493


>gi|127512559|ref|YP_001093756.1| transcription-repair coupling factor [Shewanella loihica PV-4]
 gi|126637854|gb|ABO23497.1| transcription-repair coupling factor [Shewanella loihica PV-4]
          Length = 1160

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 101/229 (44%), Gaps = 18/229 (7%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           +KG+ S    Q L  +TG+ +  ++AK+ E      +V+ P+   A +L +E        
Sbjct: 12  VKGVKSP---QTLSQLTGAARAISLAKLCEQYSSMTLVVTPDTPSALRLEAELGYLLAPK 68

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH--SATRSLLERNDCIVVSSV 278
           ++   +       P+      D++   +  ++++++ +    SA  SL      ++V   
Sbjct: 69  SIPVMLF------PDRETLPYDSFSPHQDLVSQRLETLSRIPSAGHSL------VIVPMS 116

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           + +  +      +  ++ L  GD+   + + S LV   Y   +     G F V G  I++
Sbjct: 117 TLMVKLPPQSFLTGNVLLLSKGDNYPLEAVRSQLVNTGYHHVEQVYEHGEFAVRGSIIDL 176

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
           FP   +   +R+ +F +++E I EF P T +    +E+I++     + T
Sbjct: 177 FPMGAQS-PYRIELFDDEVESIREFDPETQRSSGEIESIRLLPAKEFPT 224


>gi|326800907|ref|YP_004318726.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
 gi|326551671|gb|ADZ80056.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
          Length = 420

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 9/98 (9%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++   TK   + L + L++ +++VR  HS+++  ER +I+ D +  K ++LVG ++L  
Sbjct: 246 IIIFCSTKENVKLLEKELFKNDLKVRSFHSDLQQDEREQILLDFKNRKLNILVGTDVLSR 305

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
           G+DI    LV   D   D E +       I  IGR AR
Sbjct: 306 GIDIEGIDLVVNYDVPGDPEDY-------IHRIGRTAR 336


>gi|300121739|emb|CBK22314.2| unnamed protein product [Blastocystis hominis]
          Length = 754

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI+RD + GKF+VLV   +  EGLDI E  L+   +      + S T L+Q  GR  R  
Sbjct: 494 EILRDFKAGKFNVLVATCIAEEGLDIGEVDLLVCYEG-----ISSSTRLLQRKGRTGRKR 548

Query: 683 NSKVIL 688
           + +V++
Sbjct: 549 SGRVVM 554


>gi|259047960|ref|ZP_05738361.1| transcription-repair coupling factor [Granulicatella adiacens ATCC
           49175]
 gi|259035380|gb|EEW36635.1| transcription-repair coupling factor [Granulicatella adiacens ATCC
           49175]
          Length = 1180

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/211 (19%), Positives = 92/211 (43%), Gaps = 16/211 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+LG++GS K    +   E + +  +++ P  + A Q Y E   ++  + V  F     
Sbjct: 27  QLVLGLSGSVKHLAESCAFEKLDKQLVIVTPTLLQATQTYEELSEWYDEDIVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES- 289
                   P  ++     S ++  +   R      L      IV+  +S I  +    + 
Sbjct: 82  --------PVEESLAADFSVVSPDVVSQRIRTLDFLSRGQKGIVIVPLSGIQKLLVPAAL 133

Query: 290 YSQMIVQLKIGDSVEQKE-LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           + +  ++L +G  +E  +  +  LV+  Y+R+++    G F + G  ++I+P   ++   
Sbjct: 134 WKKSSIELAMGSEIESMDAFVERLVELGYRRENMVATPGEFALRGSIVDIYPLD-QEYPL 192

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           R+  F  +++ I  F   T + +  +E ++I
Sbjct: 193 RLDFFDTEVDSIRAFNAETQRSMDVIEEVRI 223


>gi|167957441|ref|ZP_02544515.1| excinuclease ABC subunit B [candidate division TM7 single-cell
           isolate TM7c]
          Length = 49

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 29/41 (70%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181
           F++++ Y P+GDQP AI  L  G+   ++ Q LLGVTGSGK
Sbjct: 3   FKLKSKYKPTGDQPEAIKSLTAGLSRGDREQTLLGVTGSGK 43


>gi|183221209|ref|YP_001839205.1| transcription-repair coupling factor [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911300|ref|YP_001962855.1| transcription-repair coupling factor [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775976|gb|ABZ94277.1| Transcription-repair coupling factor [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779631|gb|ABZ97929.1| Transcription-repair coupling factor (TRCF; ATP-dependent helicase
           Mfd) [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 1140

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 2/152 (1%)

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           R R      +L  N  +VV+SV+     +   ES     + LK+G     + LL  L++ 
Sbjct: 99  RDRILTINQILAGNRSLVVTSVAAFLRKLPEKESLKGKSITLKLGVDFPLEALLVELIQL 158

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y R+++    G F + G  ++I+  +L +   R+  FG+ ++EI  F P T + I+ ++
Sbjct: 159 GYHREEVCEQFGHFSLKGGILDIYTPYLTNPV-RIDFFGDTVDEIRTFDPNTQKSIQKID 217

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            + I A +  +  +  L      + E  + RL
Sbjct: 218 EVLITAANETIVTKSELEHYHNLLNEYSEKRL 249


>gi|50302639|ref|XP_451255.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660701|sp|Q6CXT4|IF4A_KLULA RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|49640386|emb|CAH02843.1| KLLA0A05731p [Kluyveromyces lactis]
          Length = 396

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD I++      + ++   T+R  E+LTE L E N  V  ++S+++  ER  I+++ R
Sbjct: 254 DLYDSISVT-----QAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFR 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   +L+  +LL  G+D+ +  LV   D  ++KE ++
Sbjct: 309 SGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYI 346


>gi|46111511|ref|XP_382813.1| hypothetical protein FG02637.1 [Gibberella zeae PH-1]
 gi|91206544|sp|Q4IJH1|DBP3_GIBZE RecName: Full=ATP-dependent RNA helicase DBP3
          Length = 581

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E R    ++ +V  E    +++  RIL+  L K+ A  +  +L  + IRV  +H +++ 
Sbjct: 394 LEPRGKEFRLLEVLKEHQQGSKKNDRILVFCLYKKEATRIENFLSRKGIRVGGIHGDLRQ 453

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            +R   +   + G+  VLV  ++   GLDIPE  LV
Sbjct: 454 EQRTRSLEAFKSGQTPVLVATDVAARGLDIPEVKLV 489


>gi|256824929|ref|YP_003148889.1| RecG-like helicase [Kytococcus sedentarius DSM 20547]
 gi|256688322|gb|ACV06124.1| RecG-like helicase [Kytococcus sedentarius DSM 20547]
          Length = 741

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 8/97 (8%)

Query: 596 EDLT----EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           EDL     E+L  R IRV  +H  ++T  +  ++     G+ DVLV   ++  G+D+P  
Sbjct: 547 EDLVVTAREHLAGRGIRVEMVHGRMQTETKDGVMAAFAAGEVDVLVATTVVEVGVDVPNA 606

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            ++ ++DAD+ G       L Q  GR  R  +  + L
Sbjct: 607 SVMLVVDADRFGI----AQLHQLRGRIGRGAHPGLCL 639


>gi|190348962|gb|EDK41523.2| hypothetical protein PGUG_05621 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 666

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A   GL I+ T  TKRMA++L ++LY++      +H +    ER + +   + G   +LV
Sbjct: 452 ANDNGLTIIFTE-TKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGTAPILV 510

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
              +   GLDIP   +  +++ D  G +      I   GRA 
Sbjct: 511 ATAVAARGLDIPN--VSHVVNYDLPGDIDDYVHRIGRTGRAG 550


>gi|40891625|gb|AAR37337.1| vasa-like protein [Crassostrea gigas]
          Length = 758

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 7/116 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+ V  KR A+ L  YL +       +H +    ER E +RD +LGK  VL+  ++  
Sbjct: 563 KTLVFVEQKRNADFLASYLSQNGFPTTSIHGDRLQAEREEALRDFKLGKAPVLIATSVAA 622

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSI 697
            GLDIP    V   D       +S    +  IGR  R  N+   +  Y++    ++
Sbjct: 623 RGLDIPLVKHVINYD-----LPQSIDEYVHRIGRTGRCGNLGKAISFYSNDTDGAL 673


>gi|313887420|ref|ZP_07821109.1| putative ATP-dependent RNA helicase RhlE [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332299626|ref|YP_004441547.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312923062|gb|EFR33882.1| putative ATP-dependent RNA helicase RhlE [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176689|gb|AEE12379.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 438

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 17/169 (10%)

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL-- 583
           ++ SAT     L+  + I+V+ ++    +  PP   +S        YD   L   + L  
Sbjct: 184 VMFSATMPKEILKLSESILVDPVLVELAVAKPP---KSIMQTAYICYDAQKLPIIRSLFT 240

Query: 584 -------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  R ++   TK     L + L    + V  MHS++    R E++RD R+G+  VL
Sbjct: 241 NPESEVSRTIIFAGTKATVHALAQTLSRDGLPVAEMHSDLSQERREEVLRDFRMGRIKVL 300

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           V  +++  G+DI +  +V   +       R     +  IGR AR  + K
Sbjct: 301 VATDIVARGIDIDDIAVVINYEVP-----RDFEDYVHRIGRTARGADGK 344


>gi|158514835|sp|A3LQ01|DED1_PICST RecName: Full=ATP-dependent RNA helicase DED1
          Length = 647

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A   GL I+ T  TKRMA++L ++LY++      +H +    ER + +   + G   +LV
Sbjct: 422 AGDAGLTIIFTE-TKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGAAPILV 480

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              +   GLDIP    V   D   +         +  IGR  R  N  +
Sbjct: 481 ATAVAARGLDIPNVAHVINYDLPSD-----IDDYVHRIGRTGRAGNVGI 524


>gi|154250254|ref|YP_001411079.1| primosomal protein N' [Fervidobacterium nodosum Rt17-B1]
 gi|154154190|gb|ABS61422.1| primosomal protein N' [Fervidobacterium nodosum Rt17-B1]
          Length = 775

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 8/79 (10%)

Query: 618 TLERIEIIRD-LRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKT 669
           T E+++ + D LR GK D++ G  ++ +GLDI    L+ ++D D           LR+  
Sbjct: 560 TPEKLKKLLDYLREGKIDIVAGTKMITKGLDIYRIALIGVVDVDALISYPDINAPLRTFQ 619

Query: 670 SLIQTIGRAARNVNSKVIL 688
            L+Q IGRA RN   K I+
Sbjct: 620 LLVQVIGRAGRNEKGKAII 638


>gi|156843946|ref|XP_001645038.1| hypothetical protein Kpol_1072p50 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380640|sp|A7TKR8|DED1_VANPO RecName: Full=ATP-dependent RNA helicase DED1
 gi|156115693|gb|EDO17180.1| hypothetical protein Kpol_1072p50 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 650

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 6/109 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A+  GL  L+ V TKRMA++LT++L  ++ R   +H +    ER   +   + G  ++LV
Sbjct: 414 ASNDGL-TLIFVETKRMADELTDFLIMQDFRATAIHGDRTQSERERALAAFKNGNANLLV 472

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              +   GLDIP    V   D   +         +  IGR  R  N+ V
Sbjct: 473 ATAVAARGLDIPNVTHVVNYDLPSD-----IDDYVHRIGRTGRAGNTGV 516


>gi|188989455|ref|YP_001901465.1| putative ATP-dependent helicase [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167731215|emb|CAP49387.1| putative ATP-dependent helicase [Xanthomonas campestris pv.
           campestris]
          Length = 839

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 33/182 (18%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565
           P  I+ SAT G+      Q +I E++        PTG     L +PPV      +R SAR
Sbjct: 247 PQFILCSATIGN-PHAHAQALIEERVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 305

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618
           +Q   +     +A + GL+ L+   T+ M E LT+YL +       +  R+R        
Sbjct: 306 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPARIRAYRGGYLP 362

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER E+ R +R G  D +V  + L  G+DI    +V +      G+  S  +  Q  GRA
Sbjct: 363 TERREVERAMRAGTIDGIVSTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 417

Query: 679 AR 680
            R
Sbjct: 418 GR 419


>gi|21229532|ref|NP_635449.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766404|ref|YP_241166.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21110998|gb|AAM39373.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66571736|gb|AAY47146.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 802

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 33/182 (18%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565
           P  I+ SAT G+      Q +I E++        PTG     L +PPV      +R SAR
Sbjct: 210 PQFILCSATIGN-PHAHAQALIEERVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 268

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618
           +Q   +     +A + GL+ L+   T+ M E LT+YL +       +  R+R        
Sbjct: 269 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPARIRAYRGGYLP 325

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER E+ R +R G  D +V  + L  G+DI    +V +      G+  S  +  Q  GRA
Sbjct: 326 TERREVERAMRAGTIDGIVSTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 380

Query: 679 AR 680
            R
Sbjct: 381 GR 382


>gi|85095256|ref|XP_960042.1| hypothetical protein NCU05782 [Neurospora crassa OR74A]
 gi|74615933|sp|Q7S5R1|DBP3_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-3
 gi|28921501|gb|EAA30806.1| hypothetical protein NCU05782 [Neurospora crassa OR74A]
          Length = 614

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 4/101 (3%)

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           +VDP    R    ++ ++  E    +Q+  RIL+  L K+ A  + ++L  + I+V  +H
Sbjct: 426 VVDP----RGKEFRLYELLKEAQKGSQKDDRILVFCLYKKEAVRVEQFLSRKGIKVASIH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            +++  +R   +   + G   VLV  ++   GLDIPE  LV
Sbjct: 482 GDLRQDQRTRSLEAFKSGTTTVLVATDVAARGLDIPEVKLV 522


>gi|323702705|ref|ZP_08114366.1| ATP-dependent DNA helicase RecG [Desulfotomaculum nigrificans DSM
           574]
 gi|323532368|gb|EGB22246.1| ATP-dependent DNA helicase RecG [Desulfotomaculum nigrificans DSM
           574]
          Length = 685

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 7/123 (5%)

Query: 590 LTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           L  + A DL E L +   + RV  +H  +K  E+  ++   R G  DVLV   ++  G+D
Sbjct: 484 LDTQAAIDLFERLQKALPSCRVGLLHGRMKANEKESVMTAFRQGSLDVLVSTTVIEVGVD 543

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAIDETTR 706
           +P   ++ I DA + G       L Q  GR  R    S  IL A+  TK  Q  I    R
Sbjct: 544 VPNATVMVIWDAQRFGL----AQLHQLRGRVGRGSQQSYCILVANPTTKEAQERIKAMCR 599

Query: 707 RRE 709
            ++
Sbjct: 600 TQD 602


>gi|322390530|ref|ZP_08064048.1| transcription-repair coupling factor [Streptococcus parasanguinis
           ATCC 903]
 gi|321142804|gb|EFX38264.1| transcription-repair coupling factor [Streptococcus parasanguinis
           ATCC 903]
          Length = 1164

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 104/214 (48%), Gaps = 15/214 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           +L+LG++ + K   MA   +++++ A+++  +   A +L S+F        V  F+   +
Sbjct: 26  ELILGLSATTKAIVMASAFDSIEK-AVLITSSYNEAERLASDFIALLGEEKVHTFLGDDN 84

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                 +  +     E++ S  E ++ +     + +L  N    VS +  +  + S + +
Sbjct: 85  PLAEFVFASQ-----ERQFSRLEALNFLCQEDRQGILVTN----VSGIKLL--LPSPKVF 133

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDVAWR 349
           +  I QLK+   ++   L  +L K  Y++    + +G F + GD ++IF    L+   +R
Sbjct: 134 ASSIFQLKVDQEIDLTTLSETLQKIGYQKVSQVLQQGEFSLRGDILDIFEIDQLQ--PYR 191

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
           +  FG++I+ I  F P + + + NVE +++ A S
Sbjct: 192 IEFFGDEIDGIRIFDPESQRSVENVEEVQLKAVS 225



 Score = 37.7 bits (86), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++ K + S R   +LL+G  G GKT   M    +A+   +  
Sbjct: 604 FEQDFPYIETDDQLRSIEEIKKDMESNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQV 663

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVE 223
            V+ P  +LA Q Y+ FK  F   AVE
Sbjct: 664 AVLVPTTVLAQQHYANFKERFESFAVE 690


>gi|254571423|ref|XP_002492821.1| Translation initiation factor eIF4A, identical to Tif1p [Pichia
           pastoris GS115]
 gi|238032619|emb|CAY70642.1| Translation initiation factor eIF4A, identical to Tif1p [Pichia
           pastoris GS115]
          Length = 403

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD I++      + ++   T+R  E+LTE L  +   V  +HSE+   ER  I+++ R
Sbjct: 254 DLYDSISVT-----QAVIFCNTRRKVEELTERLTAQKFTVSAIHSELSQTERDTIMQEFR 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   +L+  +LL  G+D+ +  LV   D  ++KE ++
Sbjct: 309 TGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYI 346


>gi|86742605|ref|YP_483005.1| transcription-repair coupling factor [Frankia sp. CcI3]
 gi|86569467|gb|ABD13276.1| transcription-repair coupling factor [Frankia sp. CcI3]
          Length = 1208

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 22/177 (12%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RP + +      A  L S   +    + V  F S+ +    E   PR DT  ++ + +  
Sbjct: 54  RPVLAVVATGREAEDLASALGSLLGPDVVTVFPSW-ETLPHERLSPRADTVGQRLAVLR- 111

Query: 254 QIDRMRHSAT--RSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQK 306
              R+ H A+  R  L     IVV+S+  +      G+G +       V L  GD+ +  
Sbjct: 112 ---RLAHPASTGRPPLR----IVVASIRAVLQPQVAGLGELAP-----VTLAEGDTADLD 159

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            +++ LV   Y R D+   RG   V G  +++FP   E+   RV  FG+++E+I  F
Sbjct: 160 GVVTRLVDIAYHRVDLVERRGEIAVRGGILDVFPP-TEEHPLRVEFFGDEVEDIRRF 215


>gi|258645745|ref|ZP_05733214.1| ATP-dependent DNA helicase RecG [Dialister invisus DSM 15470]
 gi|260403114|gb|EEW96661.1| ATP-dependent DNA helicase RecG [Dialister invisus DSM 15470]
          Length = 697

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 6/105 (5%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L ++++ +   V  +H  +K  E+ +++ D R GKF +LV  +++  G+++P+  ++ 
Sbjct: 513 ENLRDHVFPQ-FGVGLVHGRMKNAEKEQVMEDFRKGKFKLLVATSVIEVGVNVPDATVMF 571

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQL 699
           +  AD+ G     + L Q  GR  R    +  +LY D   ++ QL
Sbjct: 572 VYGADRFGL----SQLHQLRGRVGRGKEQAYCVLYTDNQNETTQL 612


>gi|223590230|sp|A5DQS0|DED1_PICGU RecName: Full=ATP-dependent RNA helicase DED1
          Length = 637

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A   GL I+ T  TKRMA++L ++LY++      +H +    ER + +   + G   +LV
Sbjct: 423 ANDNGLTIIFTE-TKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGTAPILV 481

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
              +   GLDIP   +  +++ D  G +      I   GRA 
Sbjct: 482 ATAVAARGLDIPN--VSHVVNYDLPGDIDDYVHRIGRTGRAG 521


>gi|146413260|ref|XP_001482601.1| hypothetical protein PGUG_05621 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 666

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A   GL I+ T  TKRMA++L ++LY++      +H +    ER + +   + G   +LV
Sbjct: 452 ANDNGLTIIFTE-TKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGTAPILV 510

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
              +   GLDIP   +  +++ D  G +      I   GRA 
Sbjct: 511 ATAVAARGLDIPN--VSHVVNYDLPGDIDDYVHRIGRTGRAG 550


>gi|148652953|ref|YP_001280046.1| DEAD/DEAH box helicase domain-containing protein [Psychrobacter sp.
           PRwf-1]
 gi|148572037|gb|ABQ94096.1| DEAD/DEAH box helicase domain protein [Psychrobacter sp. PRwf-1]
          Length = 516

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 7/134 (5%)

Query: 576 NLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           NL  Q+ + + ++   TKR  E L + L E+  +  ++H ++   +R  II D++ GK  
Sbjct: 273 NLLTQKDVNQAIIFAATKRSCETLAKSLKEQGHKASFLHGDLPQAKRSRIINDVKAGKIT 332

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   G+D+   G+  + + D     R     +  IGR+ R   + + +   +I 
Sbjct: 333 ILVATDVAARGIDV--SGITHVFNYD---LPRQTEDYVHRIGRSGRAGRTGIAINICSID 387

Query: 695 KSIQL-AIDETTRR 707
              QL AI+   +R
Sbjct: 388 DRAQLDAINRYLKR 401


>gi|294497056|ref|YP_003560756.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294346993|gb|ADE67322.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 503

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 26/195 (13%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R    + +H ++   +R+ ++R  + G  DVLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
            G+  + + D     +   S +  IGR  R                +  A+   T R   
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGR-------------AGKMGAAMTFVTPRETG 350

Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK-AHLKSLRK 769
           QL     HNI  ++ K K ME + P  L++A      I A +L+ S  +G  ++ K L +
Sbjct: 351 QL-----HNIE-RTTKRK-MERLTPPTLDEAMEGQQRIAADKLTESVTQGNLSYYKQLAE 403

Query: 770 QMHLAADNLNFEEAA 784
           ++    D+++   AA
Sbjct: 404 ELLEEHDSVSLVAAA 418


>gi|87199999|ref|YP_497256.1| transcription-repair coupling factor [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135680|gb|ABD26422.1| transcription-repair coupling factor [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 1164

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L  G  + ++ L++ L +Q Y R D  +  G + V G   +IFPS L D   R+  FG++
Sbjct: 130 LTPGTEIGRESLIALLQRQGYSRTDTVVDAGEYAVRGSVFDIFPSGL-DHGLRLDFFGDE 188

Query: 357 IEEISEFYPLTGQKIRNVET 376
           +E +  F P T + ++ VET
Sbjct: 189 LETLRLFDPNTQRSVQPVET 208


>gi|301602401|gb|ADK79106.1| vasa-like protein [Dicentrarchus labrax]
          Length = 637

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  YL +  +    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 454 RTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 513

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDIP+   V   D        +    +  IGR  R  N+
Sbjct: 514 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNT 549


>gi|51317205|gb|AAT99858.1| unknown [Diachasmimorpha longicaudata entomopoxvirus]
          Length = 379

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD ++L      + L+   T+R  + L E L  RN     +H ++   ER  I+++ R
Sbjct: 238 DLYDHLSLT-----QTLIFCNTRRQVDVLMECLTNRNFTASSIHGDMSQQERDFIMKEFR 292

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GK  +L+  NLL  G+D+ +  LV   D        ++ + I  IGR+ R
Sbjct: 293 DGKTRILLSTNLLARGIDVQQISLVINYDLP-----HNRENYIHRIGRSGR 338


>gi|213389870|gb|ACJ45997.1| putative ATP-dependent DNA helicase [Palm lethal yellowing
           phytoplasma]
          Length = 623

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 171 QLLLGVTGSGKT---FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +L+ G  GSGKT   F  A  + A ++  ++MAP +IL+ Q YS FKNFFP
Sbjct: 265 RLIQGDVGSGKTIISFISAIAVIAKKKQVVMMAPTEILSKQHYSNFKNFFP 315


>gi|268563240|ref|XP_002638790.1| Hypothetical protein CBG05145 [Caenorhabditis briggsae]
 gi|187035232|emb|CAP25672.1| hypothetical protein CBG_05145 [Caenorhabditis briggsae AF16]
          Length = 400

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + +L   T+R  + LT+ + E N  V  MH +++  +R E++++ R
Sbjct: 259 DLYDTLTIT-----QAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFR 313

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  LV   D        ++   I  IGR+ R
Sbjct: 314 AGNTRVLISTDVWARGLDVPQVSLVINYD-----LPNNRELYIHRIGRSGR 359


>gi|289642495|ref|ZP_06474639.1| transcription-repair coupling factor [Frankia symbiont of Datisca
           glomerata]
 gi|289507669|gb|EFD28624.1| transcription-repair coupling factor [Frankia symbiont of Datisca
           glomerata]
          Length = 1238

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           + G+G +E      V L +GDS +  E++  LV   Y R D+   RG   V G  +++FP
Sbjct: 139 VAGLGDLEP-----VTLAVGDSADLGEVVDRLVGVAYHRVDLVERRGEIAVRGGILDVFP 193

Query: 341 SHLEDVAWRVSMFGNDIEEISEF 363
              E+   RV  FG+++E+I  F
Sbjct: 194 P-TEEHPLRVEFFGDEVEDIRPF 215


>gi|221105179|ref|XP_002169963.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 597

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           +K  A+ LTE+L      V  +HS+   LER +++ D R   FDVLV  +L+  GLDI
Sbjct: 379 SKAKADSLTEFLLAEQFHVAAIHSDKTQLERNQVLSDFRENLFDVLVATDLMSRGLDI 436


>gi|328873234|gb|EGG21601.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           fasciculatum]
          Length = 418

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK   + LT  + E N  V  +H ++   ER EIIR  R
Sbjct: 276 DIYDSLTIT-----QAVIFCNTKSKVDALTNKMREANFTVASLHGDMDQKEREEIIRSFR 330

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++L  G+D+ +  LV   D   D+E +       I  IGR+ R
Sbjct: 331 SGENRVLITTDILARGIDVQQVSLVINYDLPMDRENY-------IHRIGRSGR 376


>gi|326578004|gb|EGE27868.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis O35E]
          Length = 581

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   TK   E L   L E   + RY+H ++   +R  I+ D++ GK DVLV  ++   G
Sbjct: 262 VIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARG 321

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +DI     V   D       R     +  IGR  R   + V +   +I  + QL
Sbjct: 322 IDISAISHVINYD-----LPRQVEDYVHRIGRCGRAGRTGVAVNLCSINDNRQL 370


>gi|269217166|ref|ZP_06161020.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
           700122]
 gi|269129303|gb|EEZ60388.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
           700122]
          Length = 721

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 4/127 (3%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           + G R+++   TK  A++ T+ L +  I    +H++    +R   + + R GK  VLV  
Sbjct: 262 RGGFRVIVFTRTKGGADNCTKRLRKIGIATEAIHADRSQAQRARALDNFREGKTHVLVAT 321

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT--ITKSI 697
           ++L  G+D+PE   V  ++ D           I   GRA     +   +  DT  + KSI
Sbjct: 322 DVLSRGIDVPEVDYV--INYDLPMMPEDYVHRIGRTGRAGARGYAVSFVTPDTRNLLKSI 379

Query: 698 QLAIDET 704
           Q  ID+T
Sbjct: 380 QKFIDQT 386


>gi|182414607|ref|YP_001819673.1| primosomal protein N' [Opitutus terrae PB90-1]
 gi|177841821|gb|ACB76073.1| primosomal protein N' [Opitutus terrae PB90-1]
          Length = 745

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           E++   R GK DVLVG  ++ +GLD P   LV ++DAD    +       R+   L+Q  
Sbjct: 540 EVLSQFRAGKIDVLVGTQMIGKGLDFPNVTLVGLIDADMSMHIPDFRANERTFQLLVQVA 599

Query: 676 GRAARN 681
           GRA R 
Sbjct: 600 GRAGRG 605


>gi|326316425|ref|YP_004234097.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373261|gb|ADX45530.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 461

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+ V T+  AE + E LY+  I     H  +    R +++++ R  ++ VLV  +L  
Sbjct: 270 RVLVFVATQYAAEHVAEKLYQSGIYASPFHGGLSQGTRRQVLQEFRDERWQVLVTTDLAA 329

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
            G+DI   GL A+++ D     R+    +  IGR  R   S V
Sbjct: 330 RGIDI--AGLPAVVNYD---LPRAAADYVHRIGRTGRAGASGV 367


>gi|240168966|ref|ZP_04747625.1| ATP-dependent DNA helicase RecG [Mycobacterium kansasii ATCC 12478]
          Length = 738

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 11/102 (10%)

Query: 599 TEYLYER-------NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
            E LY R       N+R+  MH  +   E+   +   R G+ DVLV   ++  G+D+P  
Sbjct: 543 AEGLYARLSSRELANLRLGLMHGRLSADEKDAAMAAFRAGRIDVLVCTTVIEVGVDVPNA 602

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++ ++DAD+ G     + L Q  GR  R  +  + L A  +
Sbjct: 603 TVMLVMDADRFGI----SQLHQLRGRIGRGAHPSLCLLASWV 640


>gi|239981759|ref|ZP_04704283.1| transcriptional-repair coupling factor [Streptomyces albus J1074]
 gi|291453617|ref|ZP_06593007.1| transcriptional-repair coupling factor [Streptomyces albus J1074]
 gi|291356566|gb|EFE83468.1| transcriptional-repair coupling factor [Streptomyces albus J1074]
          Length = 1177

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 91/215 (42%), Gaps = 22/215 (10%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           + + FT+A +     R  + +      A  L +  +   P + V  + S+ +    E   
Sbjct: 38  AARPFTVAALARETGRTVLAVTATGREAEDLAAALRTLLPPDGVVEYPSW-ETLPHERLS 96

Query: 239 PRTDTYIEKESSINEQIDRMRHS-----ATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
           PR+DT   + + +     R+ H       T  +      +       + G+G +E     
Sbjct: 97  PRSDTVGRRLAVLR----RLAHPDAGDPETGPVSVVVASVRSVLQPQVKGLGDLEP---- 148

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            V LK G + + +E++ +L    Y R ++   RG F V G  +++FP   ED   R+  +
Sbjct: 149 -VALKAGRTTDLEEVVRALAAAAYSRVELVEKRGEFAVRGGILDVFPP-TEDYPVRIEFW 206

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           G+++EEI  F      K+ +  +++I  +  +  P
Sbjct: 207 GDEVEEIRYF------KVADQRSLEIAEHGLWAPP 235


>gi|332366034|gb|EGJ43790.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1059]
          Length = 523

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|319400180|gb|EFV88415.1| type III restriction enzyme, res subunit [Staphylococcus
           epidermidis FRI909]
          Length = 952

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 7/125 (5%)

Query: 563 SARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  +VE +  + N     G  L+ L+ V +++ A  L   L +R I    +  +     
Sbjct: 430 ASNERVEHIIKKTNYYGYSGDVLKGLIFVSSRKEAYQLANQLSKRGISSVGLTGKDSIAY 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E I+ L+ G  + ++ ++L  EG+DIPE   V +L   K   +      IQ +GR  R
Sbjct: 490 RTETIKQLKEGSINYIITVDLFNEGIDIPEINQVVMLRPTKSSII-----FIQQLGRGLR 544

Query: 681 NVNSK 685
             N+K
Sbjct: 545 KSNNK 549


>gi|226356665|ref|YP_002786405.1| DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti VCD115]
 gi|226318655|gb|ACO46651.1| putative DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti
           VCD115]
          Length = 602

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 9/104 (8%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR A++L   L  R +    +H ++   +R   +   R G+  VLV  ++   GLDIPE
Sbjct: 249 TKREADELANELIHRGLEAEALHGDLAQSQRERALGAFRSGRVGVLVATDVAARGLDIPE 308

Query: 651 CGLVAI--LDADKEGFL-RSKTSLIQTIGRAARNVNSKVILYAD 691
             LV    L  D E ++ RS  +     GRA R   + +I+Y D
Sbjct: 309 VDLVVQYHLPQDPESYVHRSGRT-----GRAGRT-GTAIIMYGD 346


>gi|19343863|gb|AAH25508.1| Ifih1 protein [Mus musculus]
          Length = 467

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           SEVK +   E+ E+I   R G+ ++L+   +  EGLDI EC +V      + G + ++ +
Sbjct: 203 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 257

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           ++Q  GR AR   S  +L   + +   +  I    R +      N+  N+ P+    KI+
Sbjct: 258 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 316

Query: 731 EVIDPILLEDAATTNISIDAQ 751
           E+    +LE       SI  Q
Sbjct: 317 ELQVQSILEKKMKVKRSIAKQ 337


>gi|170717838|ref|YP_001784898.1| transcription-repair coupling factor [Haemophilus somnus 2336]
 gi|168825967|gb|ACA31338.1| transcription-repair coupling factor [Haemophilus somnus 2336]
          Length = 1144

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/257 (21%), Positives = 109/257 (42%), Gaps = 25/257 (9%)

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYS 291
           QP  + P  +T      S +++I   R SA   L   N  I ++ ++ +   +   E   
Sbjct: 64  QPVTFFPDWETLPYDNFSPHQEIISARLSALFQLQHSNKGIFIAPITTVMQRVCPAEFLQ 123

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
             ++ +K GD +  +     L    Y+  +  +  G F V G  +++FP     V +R+ 
Sbjct: 124 HNVLLIKRGDRLNIERFRLQLENAGYRAVEQVLEHGEFAVRGALLDLFPMG-SAVPFRLD 182

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            F ++I+ I  F   T + +  ++ I +     +    PT    +++ + + +    E+ 
Sbjct: 183 FFDDEIDSIRTFDVDTQRTLEEIQRINLLPAQEF----PTDRKGIEFFRSQFRETFAEIR 238

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
           ++      + + Q+I+         G+  S   Y + L          TLF+YIPE++ L
Sbjct: 239 RD-----PEHIYQQIS--------KGTLVSGIEYWQPLFFNQMA----TLFDYIPENT-L 280

Query: 472 FVDESHVTIPQISGMYR 488
           FVD   + +PQ    Y+
Sbjct: 281 FVDFEQI-VPQAERFYQ 296


>gi|324990619|gb|EGC22555.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK353]
 gi|325688268|gb|EGD30287.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK72]
          Length = 523

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|330465972|ref|YP_004403715.1| type iii restriction protein res subunit [Verrucosispora maris
           AB-18-032]
 gi|328808943|gb|AEB43115.1| type iii restriction protein res subunit [Verrucosispora maris
           AB-18-032]
          Length = 1024

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           +R L   ++   AE + ++  +R +    + SEV   E+ ++IRD + GK  VL  ++L 
Sbjct: 551 MRALGFCVSIGHAEFMADWFTQRGVSAAAVTSEVSRPEQRDLIRDFKAGKLRVLFTVDLF 610

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            EG+D+P    + +L   +     S T  +Q +GR  R  + K  L
Sbjct: 611 NEGVDLPMVDTIFLLRPTE-----SATIFLQQLGRGLRLDDDKPCL 651


>gi|327461635|gb|EGF07966.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1]
          Length = 523

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|326475978|gb|EGD99987.1| hypothetical protein TESG_07315 [Trichophyton tonsurans CBS 112818]
          Length = 1435

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DL+ GK ++LV  ++L EG+D+  C LV   D  K+  LR   S +Q  GRA +  + 
Sbjct: 483 IDDLKSGKKNLLVATSVLEEGIDVSACDLVVCFDPPKQ--LR---SFVQRRGRARKQSSK 537

Query: 685 KVILYA--DTITKSIQLAIDETTRRR 708
            VI YA  DT T     A+++  + R
Sbjct: 538 FVIFYAEDDTATHKDWEAMEDIMKER 563


>gi|325697116|gb|EGD39003.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK160]
 gi|327473355|gb|EGF18775.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK408]
 gi|332362751|gb|EGJ40547.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK49]
          Length = 523

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|325119679|emb|CBZ55232.1| putative DEAD/DEAH box helicase [Neospora caninum Liverpool]
          Length = 694

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 5/107 (4%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G + L+   TKR  + L   L  R +R   +H + +  ER  I+ D R G  ++L+  ++
Sbjct: 545 GQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQRERDRILHDFRKGDCEILLATDV 604

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              GLDI +   V   D  K     +  S I  IGR  R  N    +
Sbjct: 605 ASRGLDIHDVKFVINYDVPK-----NIESYIHRIGRTGRAGNKGTAI 646


>gi|312130721|ref|YP_003998061.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311907267|gb|ADQ17708.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 400

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 15/153 (9%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L+  +G +I++    + M   + + L    ++ + + S+++  ER   +RD + GKF++L
Sbjct: 237 LSPFEGQKIIIFTSQRSMIHKILKDLSRNKLKAKGVSSDIEQDEREVALRDFKAGKFNIL 296

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++L  G+DI    LV   D       R     I  IGR AR         ADT   S
Sbjct: 297 VATDVLSRGIDISNLNLVVNFDVP-----RDAEDYIHRIGRTAR---------ADTEGVS 342

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           I   + E  R+  K +E   +  +  Q + E +
Sbjct: 343 ITF-LTEKDRKAVKDIEALLEKEVEVQRITENL 374


>gi|301617487|ref|XP_002938176.1| PREDICTED: Fanconi anemia group M protein-like [Xenopus (Silurana)
           tropicalis]
          Length = 2037

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 18/154 (11%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM----HSE----VKTL---ERIEIIRDLRLGK 632
           RI++    +   +++ E L + +  VR M    HS     VK     E++E+++  R G 
Sbjct: 559 RIMIFSSFRDSVQEIAEMLNQHHPTVRVMTFVGHSSAGKGVKGFTQKEQLEVVKRFREGG 618

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F+ LV   +  EGLDI E  L+   DA K     S   L+Q +GR  R    ++++    
Sbjct: 619 FNTLVSTCVGEEGLDIGEVDLIICFDAQK-----SPIRLVQRMGRTGRKRQGRIVVILCQ 673

Query: 693 ITKSIQLAIDETTRRR--EKQLEHNKKHNINPQS 724
             +       ++ +R   +  L +NK  ++NPQS
Sbjct: 674 GREERTYNQSQSNKRSIFKAILGNNKMLHLNPQS 707


>gi|154687662|ref|YP_001422823.1| ComFA [Bacillus amyloliquefaciens FZB42]
 gi|154353513|gb|ABS75592.1| ComFA [Bacillus amyloliquefaciens FZB42]
          Length = 461

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 16/150 (10%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           V D +    Q  L + L V +  + +  T+Y  + NIR   +H+E     R + ++  R 
Sbjct: 316 VTDWVRQKLQSHLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAE--DTFRKDKVKRFRN 373

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NVNSKVI 687
           G+ D+LV   +L  G+ +P+     +L A+   F  ++++L+Q  GR  R   + +  V+
Sbjct: 374 GRLDLLVTTTILERGVTVPKVQ-TCVLGAEAPIF--TESALVQIAGRTGRHYKHFSGDVV 430

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKK 717
           ++   IT  ++ A        +K +EH  K
Sbjct: 431 MFHFGITSGMKKA--------KKHIEHMNK 452


>gi|322373973|ref|ZP_08048507.1| transcription-repair coupling factor [Streptococcus sp. C150]
 gi|321276939|gb|EFX54010.1| transcription-repair coupling factor [Streptococcus sp. C150]
          Length = 1168

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 130/313 (41%), Gaps = 41/313 (13%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF----- 225
           QLL+G +GS K   MA  +       +++   +  A QL  +       + V  F     
Sbjct: 28  QLLMGFSGSSKAVVMASALSEQVPKILIVTSTQNEAEQLTGDLSAILGEDKVYSFFADDV 87

Query: 226 -VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
             + + +  PE    +T + +E   S+N  +D+          E +  +V S V     +
Sbjct: 88  SAAEFIFASPE----KTHSRLE---SLNFLMDK----------EASGILVTSLVGTKLHL 130

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
            + + Y    + L +G+  + + L   L    Y+R +     G F   GD ++I+    E
Sbjct: 131 PNPKVYKDSRIDLALGEEHDLEALSKHLSNIGYQRVEQVFSPGEFSRRGDILDIYELTAE 190

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            + +R+  FG++I+ I +F   + + + N+E + +      +  R     A K ++ E+ 
Sbjct: 191 -LPYRLEFFGDEIDGIRQFDSDSQKSLDNLEHVIVSPADDIILTREDYQRAEKALESEVS 249

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                 + EG             Y  E+L  T      ++  ++L+     +   TLF+Y
Sbjct: 250 ------KSEG---------PHKAYLEEVLSVTIDGHRHKDLRKFLSLFY--DKAYTLFDY 292

Query: 465 IPEDSLLFVDESH 477
           +P+ + +F+D+ H
Sbjct: 293 LPKGTPVFIDDFH 305


>gi|307703246|ref|ZP_07640192.1| helicase conserved C-terminal domain protein [Streptococcus oralis
           ATCC 35037]
 gi|307623321|gb|EFO02312.1| helicase conserved C-terminal domain protein [Streptococcus oralis
           ATCC 35037]
          Length = 291

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 15  TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 72

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 73  SGVTHVYNYD---IPQDPESYVHRIGRTGR 99


>gi|326387814|ref|ZP_08209420.1| transcription-repair coupling factor [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207860|gb|EGD58671.1| transcription-repair coupling factor [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 1161

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 8/92 (8%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK G  + ++ L++ L +Q Y R D  +  G + V G   +IFPS L D   R+  FG++
Sbjct: 130 LKPGIEIGRETLIALLQRQGYARTDTVVDTGEYAVRGGVFDIFPSGL-DHGLRLDFFGDE 188

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           +E +  F P T + ++ VE       SH + P
Sbjct: 189 LETLRLFDPSTQRSVQPVE-------SHLLLP 213


>gi|157150549|ref|YP_001450886.1| DEAD-box ATP dependent DNA helicase [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075343|gb|ABV10026.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 523

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|332073919|gb|EGI84397.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA41301]
          Length = 524

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 16/139 (11%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDIAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLEHNKKHNINPQSVKE 727
            K L+        P SV+E
Sbjct: 362 MKGLK--------PASVEE 372


>gi|323345624|ref|ZP_08085847.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
 gi|323093738|gb|EFZ36316.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
          Length = 548

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 17/169 (10%)

Query: 521 LRPT--TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA-----RTQVEDVYD 573
           L PT  TI+ SAT      E    ++   +     +  P  +IR +      TQ  D+  
Sbjct: 178 LPPTCQTIMFSATMPDKIEELANTLLKNPVTIKLAVSKPAEKIRQSAYVCYETQKMDIIK 237

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I   A    R+++   +K+  + +T+ L ++N+    MHS+++  +R +++   + G+ 
Sbjct: 238 NI-FNAGDLKRVIIFSGSKQKVKQITKALQQKNVNCGEMHSDLEQAQRDDMMFKFKSGQL 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
           DV+V  +++  G+DI +  +V   D   D E +       +  IGR AR
Sbjct: 297 DVIVATDIISRGIDIDDIAMVINYDVPHDAEDY-------VHRIGRTAR 338


>gi|311279979|ref|YP_003942210.1| transcription-repair coupling factor [Enterobacter cloacae SCF1]
 gi|308749174|gb|ADO48926.1| transcription-repair coupling factor [Enterobacter cloacae SCF1]
          Length = 1148

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 121/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A+++E  + P +++ P+   A +LY E + F      +  ++  
Sbjct: 16  QRLLGELTGAACATEVAEIVERHRGPVVLVTPDMQNALRLYDEIRQFTDQMVMSLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQEI------ISSRLSTLYQLPAMQRGVLIVPVNTLMQR-----VCPHSYLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E   +R+  F ++I+ +  F   T + +  VE I +     +    PT  TA++  + +
Sbjct: 176 SEQ-PYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKTAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            + R                   +  D E +    S  ++     Y       EP P LF
Sbjct: 231 WRDRF-----------------DVKRDAEHIYQQVSKGTLPTGIEYWQPLFFSEPLPALF 273

Query: 463 EYIPEDSLL 471
            Y P ++L+
Sbjct: 274 SYFPANTLI 282


>gi|289613420|emb|CBI59610.1| unnamed protein product [Sordaria macrospora]
          Length = 580

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 9/127 (7%)

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           +VDP    R    ++ ++  E    +Q+  RIL+  L K+ A  + ++L  + ++V  +H
Sbjct: 392 VVDP----RGKEFRLYEILKEAQKGSQKDDRILVFCLYKKEAVRVEQFLTRKGMKVASIH 447

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            +++  +R   +   + G   VLV  ++   GLDIPE  LV  +      F  +    + 
Sbjct: 448 GDLRQDQRTRSLEAFKSGSTSVLVATDVAARGLDIPEVKLVVNVT-----FPLTIEDYVH 502

Query: 674 TIGRAAR 680
            IGR  R
Sbjct: 503 RIGRTGR 509


>gi|242212453|ref|XP_002472060.1| predicted protein [Postia placenta Mad-698-R]
 gi|220728883|gb|EED82768.1| predicted protein [Postia placenta Mad-698-R]
          Length = 599

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LT+   E  I  RY++S    +ER  ++   + G F VLV   +L EG DIP    V + 
Sbjct: 279 LTDAFREAGIDARYVYSGTPAVERRALVEMFKAGGFPVLVNCAVLTEGTDIPNIDCVVVA 338

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
                   RS+  + Q IGR  R
Sbjct: 339 RP-----TRSRNIVAQMIGRGMR 356


>gi|218134568|ref|ZP_03463372.1| hypothetical protein BACPEC_02471 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989953|gb|EEC55964.1| hypothetical protein BACPEC_02471 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1177

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 121/276 (43%), Gaps = 29/276 (10%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYS 211
           A    + KG+  +    +L G   SGK    A +I+A+   A   +++  ++  A ++  
Sbjct: 18  AGYESITKGLSVQGSAMMLSGCIDSGK----AHMIQALGADAFCRVIITYDEAKAREIVD 73

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-N 270
           + + FF  N V Y              P  D         + ++   R  A R+++E   
Sbjct: 74  DSR-FFNRNTVFY--------------PAKDLIFYSADIRSNELTSQRMKAIRAIIENEG 118

Query: 271 DCIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR--G 327
           D  VV+++  C   + + E     I+  + G  V+  +L   LV   Y  +++G ++  G
Sbjct: 119 DLTVVTTIDGCADMLMTREKLESGILTFEEGGIVDLAQLKKQLVLLGY--ENMGQVQAPG 176

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            F V G  I+IFP   ++   R+ ++ ++I+ I  F   + + I  ++ + IY  + YV 
Sbjct: 177 EFGVRGGIIDIFPL-TDETPVRIELWDDEIDSIRSFDVESQRSIERLQKVTIYPATEYVL 235

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
            +  ++  +  I +E+  +    +K  +  E  RL+
Sbjct: 236 TQVEIDDGVAAINDEVAKQADIFKKADKYEELSRLK 271


>gi|330686080|gb|EGG97702.1| transcription-repair coupling factor [Staphylococcus epidermidis
           VCU121]
          Length = 1169

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 21/194 (10%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L +GD ++  + L+ LV   Y+R+ +    G F + G  I+I+P  L   
Sbjct: 131 VEMWRNHQMTLNVGDDMDVDDFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGA 188

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +I+ I +F   T +   N+E+++I   S Y+     +N     +K   +  
Sbjct: 189 PVRIELFDTEIDSIRDFDVETQRSNDNLESVEITTASDYIITDEVINHLQTQLKTAYEDT 248

Query: 407 LIELEKEGR-----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             ++EK  R       E+ +L +   +D ++L    +                 + P T+
Sbjct: 249 RPKIEKSVRNDLKETYESFKLFESTFFDHQLLRRLVAFMY--------------DQPSTI 294

Query: 462 FEYIPEDSLLFVDE 475
            +Y   D ++ VDE
Sbjct: 295 IDYFANDVVIAVDE 308


>gi|328945532|gb|EGG39683.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1087]
          Length = 523

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|194747363|ref|XP_001956121.1| GF24750 [Drosophila ananassae]
 gi|190623403|gb|EDV38927.1| GF24750 [Drosophila ananassae]
          Length = 613

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I++ V TK+  ++L  ++    + V  +H +   ++R  ++ D R G+ ++LV  ++  
Sbjct: 367 KIIIFVATKKKVDELARFINAFGVGVGSIHGDKSQMDRDSVLNDFRNGRHNILVATDVAA 426

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+   G+  +++ D   F +S    +  IGR  R
Sbjct: 427 RGLDVD--GIKYVINFD---FPQSSEDYVHRIGRTGR 458


>gi|165928449|ref|ZP_02224281.1| helicase conserved C- domain protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165919545|gb|EDR36878.1| helicase conserved C- domain protein [Yersinia pestis biovar
           Orientalis str. F1991016]
          Length = 361

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +  E  +    GL  +  V  KR  + L E + E  ++V +++ E     R   +  L
Sbjct: 197 EAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLSSL 256

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             G+ DVL+G  +L  G+D+P  G V +    K     ++  + Q +GR  R
Sbjct: 257 AAGRIDVLIGSTILDVGVDVPSVGAVILGGGGK-----AEVEMRQRVGRGLR 303


>gi|70732836|ref|YP_262603.1| hypothetical protein PFL_5535 [Pseudomonas fluorescens Pf-5]
 gi|68347135|gb|AAY94741.1| lhr [Pseudomonas fluorescens Pf-5]
          Length = 1474

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 12/160 (7%)

Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYM 612
           PPV + +  A    E VY+ +   A++    L+ V T+R+AE L  +L ER  +  V   
Sbjct: 296 PPVPLSAVMANDVWELVYERLANLAREHRTTLIFVNTRRLAERLARHLSERLGKQAVAAH 355

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +   +R+E  + L+ G   VL+    L  G+DI +  LV  +     G  RS ++ +
Sbjct: 356 HGSLAKEQRLEAEQRLKAGDLQVLIATASLELGIDIGDVDLVCQI-----GSPRSISAFL 410

Query: 673 QTIGRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709
           Q +GR+   V    K  L+A T    I+  A+ +  RR E
Sbjct: 411 QRVGRSGHQVGGTPKGRLFALTRDDLIECAALLDCVRRGE 450


>gi|332363463|gb|EGJ41246.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK355]
          Length = 523

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|325694070|gb|EGD35988.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK150]
          Length = 523

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|324995328|gb|EGC27240.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK678]
          Length = 523

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|228476811|ref|ZP_04061459.1| transcription-repair coupling factor [Streptococcus salivarius
           SK126]
 gi|228251548|gb|EEK10685.1| transcription-repair coupling factor [Streptococcus salivarius
           SK126]
          Length = 1168

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 66/344 (19%), Positives = 139/344 (40%), Gaps = 36/344 (10%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G +GS K   MA  +       +++   +  A QL  +       + V  F +  D
Sbjct: 28  QLVMGFSGSSKAVVMASALSEQVPKILIVTSTQNEAEQLTGDLSAILGEDKVYSFFTD-D 86

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
               E      +    +  S+N  +D+          E +  +V S V     + + E Y
Sbjct: 87  VVAAEFIFASPEKTHSRLESLNFLMDK----------ESSGILVTSLVGTKLHLPNPEVY 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
               + L +G+  + + L   L    Y+R +  ++ G F   GD ++I+    E + +R+
Sbjct: 137 KDSRIDLTLGEEHDLEALSKHLTHIGYQRVEQVLLPGEFSRRGDILDIYELTAE-LPYRL 195

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             FG++I+ I +F   + + + N+E I +      +  R     A K ++  +       
Sbjct: 196 EFFGDEIDGIRQFDSDSQKSLDNLEHIIVSPADDIILTREDYQRAEKALESAVS------ 249

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
           + EG             Y  E+L  T      ++  ++L+     +   TLF+Y+P+ + 
Sbjct: 250 KAEG---------PHKAYLEEVLSVTIDGYRHKDLRKFLSLFY--DKAYTLFDYLPKGTP 298

Query: 471 LFVDESHVTIP-------QISGMYRGDFHRKATLAEYGFRLPSC 507
           +F+D+    +        +++ +   D H+  +L+   + + S 
Sbjct: 299 VFIDDFQKIVDRHGRLELEVANLLTEDLHQGKSLSHLNYLVDSF 342


>gi|256374814|ref|YP_003098474.1| transcription-repair coupling factor [Actinosynnema mirum DSM
           43827]
 gi|255919117|gb|ACU34628.1| transcription-repair coupling factor [Actinosynnema mirum DSM
           43827]
          Length = 1187

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 89/224 (39%), Gaps = 29/224 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGS------GKTFTMAKVIEAMQR--PAIVMAPNKI 204
           QP  ++ LL  +   + ++ L    GS      G       V  A+ R  P + +     
Sbjct: 3   QPGPLSGLLTAVLPDKALRALADAAGSPELELEGPPAARPLVAAALSRTSPVLAVTATGR 62

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
            A +L S  ++     AV  F S+ +    E   PR DT   +   +     R+ H   R
Sbjct: 63  EAEELASVLRDLVGPEAVAIFPSW-ETLPHERLSPRADTVGARLQVLR----RLAHPGDR 117

Query: 265 SLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            L       VV++V  +      G+G +E      + L  G   +   LL  L +  Y R
Sbjct: 118 PLR-----AVVATVRSLIQPMAPGLGDLEP-----LDLATGSEHDFDALLHRLAELAYTR 167

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            D+   RG F V G  +++FP   E    RV  +G+++ EI  F
Sbjct: 168 VDMVEKRGEFAVRGGILDVFPPTAEH-PLRVEFWGDEVTEIRPF 210


>gi|327468980|gb|EGF14452.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK330]
          Length = 523

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|323352691|ref|ZP_08087661.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
 gi|322121727|gb|EFX93473.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
          Length = 523

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|308178183|ref|YP_003917589.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745646|emb|CBT76618.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 642

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 9/152 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ++  V TK   EDL + L  R      ++ ++   +R   I +LR GK D+LV  ++   
Sbjct: 268 VIAFVRTKMATEDLADKLKARGFTAAAINGDIPQQQRERTIENLRSGKIDILVATDVAAR 327

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  ++  IL+     K +  AI+
Sbjct: 328 GLDVERISHVVNFDIPHDTESYVHR----IGRTGRAGRKGDA--ILFMTPREKYLLRAIE 381

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           + TR+   Q++     ++N + + +K  + ID
Sbjct: 382 KATRQPVTQMQLPSLDSVNDRRI-QKFTDRID 412


>gi|227522311|ref|ZP_03952360.1| helicase [Lactobacillus hilgardii ATCC 8290]
 gi|227090518|gb|EEI25830.1| helicase [Lactobacillus hilgardii ATCC 8290]
          Length = 451

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 7/122 (5%)

Query: 609 VRYMHSEVKT--LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           +  +H++ KT   +R +I+ D + G   VL  ++L+ EG D+P+C +V +L   +   L 
Sbjct: 241 IEAVHADAKTPKAKRDQIMHDFKNGNIKVLCNVDLISEGFDVPDCSVVIMLRPTESLVLD 300

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
            + S+     R  R  ++KV    D +    +  + +T R+   +    KK   N +S+ 
Sbjct: 301 IQQSM-----RCMRYKSNKVATIIDHVANYTRFGLPDTPRQWSLEGRPKKKRKNNTKSIP 355

Query: 727 EK 728
            K
Sbjct: 356 VK 357


>gi|198423899|ref|XP_002126471.1| PREDICTED: similar to Eukaryotic initiation factor 4A-III
           (Eukaryotic translation initiation factor 4A isoform 3)
           (ATP-dependent RNA helicase eIF4A-3) (ATP-dependent RNA
           helicase DDX48) (DEAD box protein 48) (Eukaryotic
           initiation factor 4A-like NUK-34) (Nucl... [Ciona
           intestinalis]
          Length = 409

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + + N  V  MH ++   ER EI++  R
Sbjct: 268 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMRDANFTVLCMHGDMPQKERTEIMKQFR 322

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 323 SGESRVLICTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 368


>gi|327489488|gb|EGF21281.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1058]
          Length = 523

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|325115741|emb|CBZ51296.1| hypothetical protein NCLIV_043620 [Neospora caninum Liverpool]
          Length = 673

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 5/102 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K+  +D+ EYL  + +    +H  +   ER + +R  R G+ DVLVG ++  +
Sbjct: 478 VLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSDAVRAFREGRKDVLVGTDVASK 537

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           GLD P    V   D  KE       + +  IGR  R   + V
Sbjct: 538 GLDFPAIQHVINFDMPKE-----IENYVHRIGRTGRCGRTGV 574


>gi|322390145|ref|ZP_08063679.1| DNA helicase RecG [Streptococcus parasanguinis ATCC 903]
 gi|321143176|gb|EFX38620.1| DNA helicase RecG [Streptococcus parasanguinis ATCC 903]
          Length = 671

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 5/98 (5%)

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           E  + +  RV  +H ++K+ E+  I++  +  + DVLV   ++  G+++P   ++ I+DA
Sbjct: 489 EAFFGQRARVSLLHGKMKSEEKDAIMQAFKEHQVDVLVSTTVIEVGVNVPNATVMVIMDA 548

Query: 660 DKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           D+ G     + L Q  GR  R N  S  IL A+  T S
Sbjct: 549 DRFGL----SQLHQLRGRVGRGNKQSYAILVANPKTDS 582


>gi|269967617|ref|ZP_06181667.1| transcription-repair coupling factor [Vibrio alginolyticus 40B]
 gi|269827704|gb|EEZ81988.1| transcription-repair coupling factor [Vibrio alginolyticus 40B]
          Length = 1153

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 127/298 (42%), Gaps = 38/298 (12%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L  + G+     +A++ +     ++++ P+  +A +L +E + F      +  VS +  +
Sbjct: 21  LGNLPGAALPLAIAELAKQHSSHSLLVVPDPQIALKLQAEIEQF-----TDQTVSLFPDW 75

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS- 291
           +   Y    D +   +  I+E+I R+       L  + D I +  VS +    S  ++  
Sbjct: 76  ETLPY----DNFSPHQEIISERIARLYQ-----LPSQRDGITIVPVSTVLQRQSPRNFLL 126

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q  + +K GD +  ++L   L    Y+  D     G +   G  +++FP    D  +R+ 
Sbjct: 127 QHTLMVKTGDRISLEKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSND-PYRID 185

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            F ++I+ I  F P   + I +++ I++     +    PT   A++  +   + +     
Sbjct: 186 FFDDEIDTIRTFDPENQRSIDDIQQIQLLPAHEF----PTTKEAIEDFRTRWRTQ----- 236

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                 +A+R  + I     M  T G+  +   Y + L   +      TLFEY+PEDS
Sbjct: 237 -----FDARREPESIY----MQVTKGTWPAGIEYWQPLFFDH----TETLFEYLPEDS 281



 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AEDL + + E  I V +     + LERI  + D    +F+VLV   ++  G+D+P  
Sbjct: 826 EKTAEDLQKLIPEARITVAHGQMRERELERI--MNDFYHQRFNVLVCTTIIETGIDVPTA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + +  AD  G       L Q  GR  R+
Sbjct: 884 NTIIMDRADNLGL----AQLHQLRGRVGRS 909


>gi|256787262|ref|ZP_05525693.1| transcriptional-repair coupling factor [Streptomyces lividans TK24]
 gi|289771157|ref|ZP_06530535.1| transcription-repair coupling factor [Streptomyces lividans TK24]
 gi|289701356|gb|EFD68785.1| transcription-repair coupling factor [Streptomyces lividans TK24]
          Length = 1184

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 92/215 (42%), Gaps = 22/215 (10%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           + + F +A +     RP + +      A  L +  ++  P   +  + S+ +    E   
Sbjct: 38  AARPFAIAALARETGRPVLAVTATGREAEDLAAALRSLLPPEGIVEYPSW-ETLPHERLS 96

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQM 293
           PR+DT   + + +     R+ H            +VV+ V  +      G+G +E     
Sbjct: 97  PRSDTVGRRLAVLR----RLAHPRPDDPETGPVSVVVAPVRSVLQPQVKGLGDLEP---- 148

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            V L+ G   + +E++ +L    Y R ++   RG F V G  +++FP   E+   RV  +
Sbjct: 149 -VALRTGQGADLEEIVQALAAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRVEFW 206

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           G+D+EEI  F      K+ +  ++++  +  +  P
Sbjct: 207 GDDVEEIRYF------KVADQRSLEVAEHGLWAPP 235


>gi|3641|emb|CAA39465.1| DBP1 [Saccharomyces cerevisiae]
          Length = 618

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L+A+     L+ V TKRMA+ LT++L  +N +   +H +    ER   +   +    D+L
Sbjct: 407 LSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADIL 466

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D   +         +  IGR  R  N+ V
Sbjct: 467 VATAVAARGLDIPNVTHVINYDLPSD-----IDDYVHRIGRTGRAGNTGV 511


>gi|68076513|ref|XP_680176.1| RNA helicase-1 [Plasmodium berghei strain ANKA]
 gi|56501072|emb|CAH93553.1| RNA helicase-1, putative [Plasmodium berghei]
          Length = 632

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 11/120 (9%)

Query: 567 QVEDVYDEINLA------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +VE V +E  L+       + G  +L+    K+  +D+ EYL  + I    +H  +   E
Sbjct: 413 EVEYVKEEFKLSYLLQVLQKTGPPVLIFCENKKDVDDVHEYLLLKGINAIAIHGSLGQTE 472

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E I   R G+ DVLVG ++  +GLD P    V   D  K+       + +  IGR  R
Sbjct: 473 RLEAINLFRNGEKDVLVGTDVASKGLDFPSIEHVINYDMPKD-----IENYVHRIGRTGR 527


>gi|94984710|ref|YP_604074.1| DEAD/DEAH box helicase-like protein [Deinococcus geothermalis DSM
           11300]
 gi|94554991|gb|ABF44905.1| ATP-dependent RNA helicase DbpA [Deinococcus geothermalis DSM
           11300]
          Length = 591

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 9/104 (8%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR A++L   L  R I    +H ++   +R   +   R G+  VLV  ++   GLDIPE
Sbjct: 254 TKREADELANELIHRGIESEALHGDLAQSQRERALGAFRSGRVGVLVATDVAARGLDIPE 313

Query: 651 CGLVAI--LDADKEGFL-RSKTSLIQTIGRAARNVNSKVILYAD 691
             LV    L  D E ++ RS  +     GRA R   + +++Y D
Sbjct: 314 VDLVVQYHLPQDPESYVHRSGRT-----GRAGRT-GTAIVMYGD 351


>gi|281490897|ref|YP_003352877.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281374655|gb|ADA64175.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
           lactis subsp. lactis KF147]
          Length = 547

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 6/169 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  R   MH ++   +R+ ++RD + G  DVLV  ++   GLD+  
Sbjct: 248 TKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLVATDVAARGLDV-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     + + S +  IGR  R   S + + +          AI+  T++  
Sbjct: 306 SGVTHVYNYD---ITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAIENMTKKPM 362

Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
           K L+   K      S+   + +V+  +  + A       D Q  SL +K
Sbjct: 363 KGLKPPTKEEAYQASLSVAMDDVLRDLSDDSAKAKLAKFDKQAASLLEK 411


>gi|254425384|ref|ZP_05039102.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
 gi|196192873|gb|EDX87837.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
          Length = 570

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 8/160 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK    +L+E L  R      +  +V   +R   +  LR GK D+LV  ++   
Sbjct: 248 MIVFVRTKVATVELSEKLEARGYNTAPLSGDVPQNQRERTVERLRQGKLDILVATDVAAR 307

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R    + IL+     K +  +I+
Sbjct: 308 GLDVERISHVINYDMPYDPEAYVHR----IGRTGRAGR--EGEAILFVTPREKRLLSSIE 361

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
            +TR+R +++E      +N Q ++    ++ + +  ED+A
Sbjct: 362 RSTRQRIERMEMPSTEVVNDQRIERFKQKITNALAQEDSA 401


>gi|190407839|gb|EDV11104.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
          Length = 617

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L+A+     L+ V TKRMA+ LT++L  +N +   +H +    ER   +   +    D+L
Sbjct: 406 LSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADIL 465

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D   +         +  IGR  R  N+ V
Sbjct: 466 VATAVAARGLDIPNVTHVINYDLPSD-----IDDYVHRIGRTGRAGNTGV 510


>gi|149022054|ref|ZP_01836016.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP23-BS72]
 gi|147929898|gb|EDK80887.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP23-BS72]
          Length = 511

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 16/139 (11%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLEHNKKHNINPQSVKE 727
            K L+        P SV+E
Sbjct: 362 MKGLK--------PASVEE 372


>gi|315656087|ref|ZP_07908978.1| transcription-repair coupling factor [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315493089|gb|EFU82689.1| transcription-repair coupling factor [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 1165

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 14/172 (8%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+AP+   A QL  E   +     VE F  + +    E   PRTDT   +  +++
Sbjct: 47  ERLTVVLAPSTRAATQLARELGAY--TAGVELFPDW-ETLPHERLSPRTDTMARRIWALH 103

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
               R+ H   +  +      V ++++ +     +  Y    VQ  +GD+ ++  + + L
Sbjct: 104 ----RVTHPHPQDAVHFLVMPVRAALAPVNA--HIADYPLFTVQ--VGDTYDRDTMAADL 155

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEF 363
           ++  Y+R D+   RG F V G  +++F P+    V  R+ +FG++++ I  F
Sbjct: 156 LRLGYERVDMVGARGQFAVRGGLLDVFSPTAAHPV--RIELFGDEVDTIRAF 205


>gi|312199937|ref|YP_004019998.1| helicase domain protein [Frankia sp. EuI1c]
 gi|311231273|gb|ADP84128.1| helicase domain protein [Frankia sp. EuI1c]
          Length = 859

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++  LTK  AE+LT +L  +   V   H   +  ERI    DL   +   LV  + L  G
Sbjct: 405 IVYTLTKPAAEELTGFLRAQGHTVAVYHGGTEPAERIAAEEDLLANRVKALVATSALGMG 464

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVIL 688
            D P+ G V  + A       S  S  Q IGRA R V  ++V+L
Sbjct: 465 FDKPDLGFVVHVGAPS-----SPISYYQQIGRAGRGVERAEVVL 503


>gi|270016295|gb|EFA12741.1| Rm62 [Tribolium castaneum]
          Length = 776

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 5/116 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           T++ ++  EI    + G +I++ V TK+  E +T  +         MH +    ER  ++
Sbjct: 360 TKLNNLLQEIGNNGEPGAKIIIFVETKKKVESITRTIRRYGWPAVCMHGDKSQQERDFVL 419

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           R+ R GK  +L+  ++   GLD+   G+  +++ D   +  S    I  IGR  R+
Sbjct: 420 REFRNGKSSILIATDVAARGLDVE--GIKYVINYD---YPNSSEDYIHRIGRTGRS 470


>gi|254821178|ref|ZP_05226179.1| ATP-dependent DNA helicase RecG [Mycobacterium intracellulare ATCC
           13950]
          Length = 739

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 11/103 (10%)

Query: 595 AEDLTEYLYER-------NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           A +  E LY R       ++R+  MH  +   E+  ++   R G+ DVLV   ++  G+D
Sbjct: 540 APETAEGLYARLRSGELAHLRLGLMHGRLSGDEKDAVMAAFRAGEIDVLVCTTVIEVGVD 599

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           +P   ++ ++DAD+ G     + L Q  GR  R  +  + L+A
Sbjct: 600 VPNATVMLVMDADRFGI----SQLHQLRGRIGRGRHPSLCLFA 638


>gi|15672332|ref|NP_266506.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723219|gb|AAK04448.1|AE006272_2 ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326405930|gb|ADZ63001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 547

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 6/169 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  R   MH ++   +R+ ++RD + G  DVLV  ++   GLD+  
Sbjct: 248 TKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLVATDVAARGLDV-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     + + S +  IGR  R   S + + +          AI+  T++  
Sbjct: 306 SGVTHVYNYD---ITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAIENMTKKPM 362

Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
           K L+   K      S+   + +V+  +  + A       D Q  SL +K
Sbjct: 363 KGLKPPTKEEAYQASLSVAMDDVLRDLSDDSAKAKLAKFDKQAASLLEK 411


>gi|116493280|ref|YP_805015.1| transcription-repair coupling factor [Pediococcus pentosaceus ATCC
           25745]
 gi|116103430|gb|ABJ68573.1| transcription-repair coupling factor [Pediococcus pentosaceus ATCC
           25745]
          Length = 1165

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 10/180 (5%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L++G   E + L+S L    Y+R +    +G F V G  ++IFP + +D   R+  F 
Sbjct: 138 ITLEVGAEYEFQTLISDLNALGYQRVEQVEKKGEFAVRGSVVDIFPLNQDD-PIRMDFFD 196

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
            +I+ +  F   T + I N+E I++   +  +     LN A+K +  EL     +L +E 
Sbjct: 197 IEIDSLRTFDQATQRSIENIEKIEVLPATDLIINETKLNQAIKTMNNELAQAQKKLSEEN 256

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
              EA  L+Q I    E++E     Q I+  + Y   +       +L +Y+ + +L+  D
Sbjct: 257 --FEA--LQQNIN---EVIERWKHHQLIQEDTMY--AKQLYAAKTSLLDYLTKGTLVLDD 307



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y+H ++   +  +I+ +   G++DVLV   ++  G+DIP    + + +AD  G L  
Sbjct: 855 RVGYIHGQMTEKQLEDILFEFIAGEYDVLVTTTIIETGIDIPNANTLFVENADHMG-LSQ 913

Query: 668 KTSLIQTIGRAAR 680
              L   IGR++R
Sbjct: 914 LYQLRGRIGRSSR 926


>gi|303237281|ref|ZP_07323851.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens
           FB035-09AN]
 gi|302482668|gb|EFL45693.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens
           FB035-09AN]
          Length = 565

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 9/141 (6%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           ++D++   NL      R+++   +K+  + +   L ++ I    MHS++   ER E++  
Sbjct: 236 IKDIFKAGNLQ-----RVIIFSGSKQKVKQIALSLNQKKINCGQMHSDLAQAERDEMMFK 290

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFLR--SKTSLIQTIGRAARNVN 683
            + G+ DVLV  ++L  G+DI +  +V   D   D E ++    +T+     G A   VN
Sbjct: 291 FKSGQIDVLVATDILARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRKGSAITFVN 350

Query: 684 SKVILYADTITKSIQLAIDET 704
              I Y   I K ++  +++ 
Sbjct: 351 EDDIYYFQQIEKFLEKEVEKA 371


>gi|269957468|ref|YP_003327257.1| transcription-repair coupling factor [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269306149|gb|ACZ31699.1| transcription-repair coupling factor [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 1218

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 118/296 (39%), Gaps = 50/296 (16%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE--YFVSYYDYYQPEAYVPRTDTYIEKE 248
           A QRP +V+      A +L +  + + P    +    +  ++    E   PR DT   + 
Sbjct: 46  AKQRPVVVVTATGRQADELAASVRAYLPDEQADEVAVLPAWETLPHERLSPRADTVARRI 105

Query: 249 SSINEQIDRMRH--------SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           +       R+ H           R L+     ++   VS   G+G +E      V L  G
Sbjct: 106 AVFR----RLAHPVPETGPAGPIRVLVMPARALLQPVVS---GLGELEP-----VALHDG 153

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           D  +  ++   LV   Y R D+   RG F V G  +++FP   ED   RV  +G+++ EI
Sbjct: 154 DVADLTDVAERLVAAAYSRVDMVERRGEFAVRGGILDVFPP-TEDHPLRVEFWGDEVSEI 212

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTP-RPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419
             F       + +  +++I     +  P R  L TA       ++ R            A
Sbjct: 213 RWF------SVADQRSLEIAQQGLWAPPCREILLTA------SVRAR------------A 248

Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
             L + +   +EML+   +  ++E     L      E  P L + +P+D+LL +DE
Sbjct: 249 AALVETMPGAVEMLDRLAAGVAVEGMES-LAPVLVDELVPVL-DLVPDDALLVIDE 302


>gi|293334655|ref|NP_001168054.1| hypothetical protein LOC100381784 [Zea mays]
 gi|223945725|gb|ACN26946.1| unknown [Zea mays]
          Length = 672

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 8/125 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D+I  +   G +I++   TKRM + L   L  R      +H +    ER  ++ D R G+
Sbjct: 393 DQILRSQDPGSKIIIFCSTKRMCDQLARNL-SRQYGASAIHGDKSQAERDSVLNDFRSGR 451

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYA 690
             VLV  ++   GLDI +  +V   D     F       +  IGR  R     S    + 
Sbjct: 452 CPVLVATDVAARGLDIKDIRIVVNYD-----FPTGVEDYVHRIGRTGRAGATGSAYTFFG 506

Query: 691 DTITK 695
           D  +K
Sbjct: 507 DQDSK 511


>gi|171689324|ref|XP_001909602.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944624|emb|CAP70735.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1406

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T E IE +   R GK ++LV  ++L EG+D+P C LV     DK   L+   S IQ 
Sbjct: 408 DLTTKEDIESLHRFRKGKVNLLVATSVLEEGIDVPVCNLVICF--DKPSNLK---SFIQR 462

Query: 675 IGRAARNVNSKVILYADTITKSIQ 698
            GRA  N +   +L+ D   +S++
Sbjct: 463 RGRARMNESELWVLFKDDQDQSLE 486


>gi|6325138|ref|NP_015206.1| Dbp1p [Saccharomyces cerevisiae S288c]
 gi|1706311|sp|P24784|DBP1_YEAST RecName: Full=ATP-dependent RNA helicase DBP1; AltName: Full=DEAD
           box protein 1; AltName: Full=Helicase CA1
 gi|1163095|gb|AAB68243.1| Dbp1p: putative ATP-dependent DEAD box RNA helicase [Saccharomyces
           cerevisiae]
 gi|256274187|gb|EEU09095.1| Dbp1p [Saccharomyces cerevisiae JAY291]
 gi|259150039|emb|CAY86842.1| Dbp1p [Saccharomyces cerevisiae EC1118]
 gi|285815423|tpg|DAA11315.1| TPA: Dbp1p [Saccharomyces cerevisiae S288c]
 gi|323346178|gb|EGA80468.1| Dbp1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 617

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L+A+     L+ V TKRMA+ LT++L  +N +   +H +    ER   +   +    D+L
Sbjct: 406 LSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADIL 465

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D   +         +  IGR  R  N+ V
Sbjct: 466 VATAVAARGLDIPNVTHVINYDLPSD-----IDDYVHRIGRTGRAGNTGV 510


>gi|71756053|ref|XP_828941.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70834327|gb|EAN79829.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
 gi|261334867|emb|CBH17861.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 401

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +A       ++   T++  E L + + +    V +MH ++   ER EI+R+ R
Sbjct: 260 DLYDTLTIA-----HAVIFCNTRKKVEQLAKKMTKEKFTVSFMHGDMPQAERDEIMRNFR 314

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GK  VL+  +L   G+D+ +  LV   D        S+   I  IGR  R
Sbjct: 315 EGKSRVLISTDLWSRGIDVEQISLVLNYD-----LPFSREQYIHRIGRTGR 360


>gi|332361718|gb|EGJ39522.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1056]
          Length = 523

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|323335026|gb|EGA76316.1| Dbp1p [Saccharomyces cerevisiae Vin13]
          Length = 617

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L+A+     L+ V TKRMA+ LT++L  +N +   +H +    ER   +   +    D+L
Sbjct: 406 LSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADIL 465

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D   +         +  IGR  R  N+ V
Sbjct: 466 VATAVAARGLDIPNVTHVINYDLPSD-----IDDYVHRIGRTGRAGNTGV 510


>gi|281203069|gb|EFA77270.1| DEAD/DEAH box helicase domain-containing protein [Polysphondylium
           pallidum PN500]
          Length = 1147

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+    LT+ + E N  V  MH +++  ER EII+  R
Sbjct: 280 DIYDSLTIT-----QAVIFCNTKQKVNILTDKMREANFTVASMHGDMEQKEREEIIKSFR 334

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++L  G+D+ +  LV   D   D+E +       I  IGR+ R
Sbjct: 335 SGENRVLITTDILARGIDVQQVSLVINYDLPNDRENY-------IHRIGRSGR 380


>gi|47230040|emb|CAG10454.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1724

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++E++   R G F+ LV   +  EGLDI E  L+   DA K     + T L+Q +GR  
Sbjct: 596 EQLEVVHRFRQGGFNTLVSTCVGEEGLDIGEVDLIVCFDAQK-----NPTRLVQRMGRTG 650

Query: 680 RNVNSKVIL 688
           R    ++++
Sbjct: 651 RKRQGRIVV 659


>gi|21221548|ref|NP_627327.1| transcriptional-repair coupling factor [Streptomyces coelicolor
           A3(2)]
 gi|10241792|emb|CAC09550.1| putative transcriptional-repair coupling factor [Streptomyces
           coelicolor A3(2)]
          Length = 1184

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 92/215 (42%), Gaps = 22/215 (10%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           + + F +A +     RP + +      A  L +  ++  P   +  + S+ +    E   
Sbjct: 38  AARPFAIAALARETGRPVLAVTATGREAEDLAAALRSLLPPEGIVEYPSW-ETLPHERLS 96

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQM 293
           PR+DT   + + +     R+ H            +VV+ V  +      G+G +E     
Sbjct: 97  PRSDTVGRRLAVLR----RLAHPRPDDPETGPVSVVVAPVRSVLQPQVKGLGDLEP---- 148

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            V L+ G   + +E++ +L    Y R ++   RG F V G  +++FP   E+   RV  +
Sbjct: 149 -VALRTGQGADLEEIVQALAAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRVEFW 206

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           G+D+EEI  F      K+ +  ++++  +  +  P
Sbjct: 207 GDDVEEIRYF------KVADQRSLEVAEHGLWAPP 235


>gi|322392420|ref|ZP_08065880.1| transcription-repair coupling factor [Streptococcus peroris ATCC
           700780]
 gi|321144412|gb|EFX39813.1| transcription-repair coupling factor [Streptococcus peroris ATCC
           700780]
          Length = 1167

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 108/237 (45%), Gaps = 13/237 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QLLLG++GS K+  +A  +++ Q   +VM      A +L ++  +    + V      Y 
Sbjct: 30  QLLLGLSGSAKSLAIASSVKS-QNKILVMTSTYGEAERLVNDLISILGSDMV------YP 82

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
               ++  P  +  +  +  I  +++ +R    +S  +R   +   + S ++ +   + +
Sbjct: 83  LLVDDS--PMVEFLVSSQEKIFSRVEALRFLRDKS--QRGILVCNVAASRLF-LPDPQVF 137

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
              +++L+IG   EQ EL + L+   YK+      +  F + GD ++IF +  +   +R+
Sbjct: 138 DNSMLKLEIGQECEQNELKNQLISLGYKKVTQVQSQSEFSLRGDILDIFETS-QISPYRI 196

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
             FG++I+ I EF   T     +   + IY  S  +      +   K+++ E+   L
Sbjct: 197 EFFGDEIDGIREFDTETQLSKDSKTQVLIYPASDILLTNEDYHRGQKFLEHEIDKAL 253


>gi|312278882|gb|ADQ63539.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           thermophilus ND03]
          Length = 528

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ IIRD + G+ D++V  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDIMVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|164683438|gb|ABY66383.1| eukaryotic initiation factor 4A [Plutella xylostella]
          Length = 422

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++A     + ++   T+R  + LTE ++ER+  V  MH ++   ER  I+R  R
Sbjct: 281 DLYDTLSIA-----QAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFR 335

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  +LL  G+D+ +   V
Sbjct: 336 TGSSRVLITTDLLARGIDVQQVSCV 360


>gi|295702421|ref|YP_003595496.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294800080|gb|ADF37146.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 503

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 26/195 (13%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R    + +H ++   +R+ ++R  + G  DVLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
            G+  + + D     +   S +  IGR  R                +  A+   T R   
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGR-------------AGKMGAAMTFVTPRETG 350

Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK-AHLKSLRK 769
           QL     HNI  ++ K K ME + P  L++A      I A +L+ S  +G  ++ K L +
Sbjct: 351 QL-----HNIE-RTTKRK-MERLTPPTLDEAMEGQQRIAADKLTESVTQGNLSYYKQLAE 403

Query: 770 QMHLAADNLNFEEAA 784
           ++    D+++   AA
Sbjct: 404 ELLEEHDSVSLVAAA 418


>gi|116748877|ref|YP_845564.1| type III restriction enzyme, res subunit [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697941|gb|ABK17129.1| type III restriction enzyme, res subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 1077

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++ G R L    ++R A+ + +Y   + +R   +HS  +T  R   ++ L  G+ DV+  
Sbjct: 600 SRAGRRTLAFCCSQRHADFMADYFTNQGVRAASVHSGPQTAPRGGTLKRLTDGELDVIFA 659

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +++  EG+D+P    V +L   +     S+   +Q  GR  R    K
Sbjct: 660 VDMFNEGVDLPNVDTVMMLRPTE-----SRILWLQQFGRGLRVAEGK 701


>gi|212379269|gb|ACJ24885.1| putative ATP-dependent helicase [Streptomyces pactum]
          Length = 1043

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 7/121 (5%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           V  V D+++  A   +R L   +T   A  + +   +  I  + +       ER + + D
Sbjct: 543 VRQVRDKVSDPAT--MRALGFCVTVAHATFMADVFCQEGINAKALDGTTPRAERAQALDD 600

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LR GK  +L  ++L  EGLD+P+   + +L         S T  +Q +GR  R    K +
Sbjct: 601 LRDGKVQILFSVDLFNEGLDVPDVDTLLLLRPTS-----SATVFLQQLGRGLRRTPHKAV 655

Query: 688 L 688
           L
Sbjct: 656 L 656


>gi|170057770|ref|XP_001864629.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167877091|gb|EDS40474.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 798

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 10/138 (7%)

Query: 559 VEIRSARTQVEDVYDEI---NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           VE    R+ + D+   I   N   ++    L+ V TK+ A+ L ++LY  N  V  +H +
Sbjct: 523 VEENDKRSHLLDLLSNIKDQNDGDEKDCLTLIFVETKKSADALEDFLYNYNHPVTSIHGD 582

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
               ER E ++  R G+  VLV   +   GLDIP    V   D   E         +  I
Sbjct: 583 RTQKEREEALKFFRSGRCPVLVATAVAARGLDIPNVKHVINFDLPAE-----VEEYVHRI 637

Query: 676 GRAAR--NVNSKVILYAD 691
           GR  R  N+ +    + D
Sbjct: 638 GRTGRMGNLGTATSFFND 655


>gi|163839675|ref|YP_001624080.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162953151|gb|ABY22666.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 652

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ++  V TK   E+L + L  R  R   ++ ++   +R   +  LR G  DVLV  ++   
Sbjct: 288 VIAFVRTKMATEELADKLKSRGYRAAAINGDIPQQQRERTVEALRSGSIDVLVATDVAAR 347

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+    LV   D   D E ++      I   GRA R+ ++  IL+     K +  AI+
Sbjct: 348 GLDVERISLVVNYDIPHDTESYVHR----IGRTGRAGRSGDA--ILFMTPREKYLLRAIE 401

Query: 703 ETTRRREKQLEHNKKHNIN 721
           + TR+  +Q+       IN
Sbjct: 402 KATRQPVEQMHLPSADTIN 420


>gi|163802119|ref|ZP_02196015.1| transcription-repair coupling factor [Vibrio sp. AND4]
 gi|159174260|gb|EDP59068.1| transcription-repair coupling factor [Vibrio sp. AND4]
          Length = 1153

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 61/301 (20%), Positives = 127/301 (42%), Gaps = 36/301 (11%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L  + G+     +A++++     ++++ P+  +A +L +E + F      +  VS +  +
Sbjct: 21  LGNLPGAALPMAIAELVKQHSSHSVLVVPDPQIALKLQAEIEQF-----TDQPVSLFPDW 75

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           +   Y    D +   +  I+++I R+    T+S    N   +V   + +      +   Q
Sbjct: 76  ETLPY----DNFSPHQEIISDRIARLYQLPTQS----NGVTIVPVSTVLQRQSPRDFLLQ 127

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             + +K GD    ++L   L    Y+  D     G +   G  +++FP    D  +R+  
Sbjct: 128 HTLMVKTGDQFSLEKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDF 186

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           F ++I+ I  F P   + I +++ I++     +    PT   A++  +   + +      
Sbjct: 187 FDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEF----PTTKAAIEDFRTRWRTQF----- 237

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
                EA+R  + I     M  T G+  +   Y + L   +      TLF+Y+P+DS L 
Sbjct: 238 -----EARREPESIY----MQVTKGTWPAGIEYWQPLFFDHT----ETLFDYLPDDSQLI 284

Query: 473 V 473
           V
Sbjct: 285 V 285


>gi|66807079|ref|XP_637262.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
 gi|74996736|sp|Q54KG1|DDX41_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx41; AltName:
           Full=DEAD box protein 41
 gi|60465669|gb|EAL63748.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
          Length = 671

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 5/102 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K+  +D+ EYL  + +    +H +    ER   I+  R GK DVLV  ++  +
Sbjct: 477 VLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIKAFREGKKDVLVATDVASK 536

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           GLD PE   V   D  +E       + I  IGR  R  N  V
Sbjct: 537 GLDFPEIQHVINFDMPRE-----IENYIHRIGRTGRRGNKGV 573


>gi|323302724|gb|EGA56530.1| Dbp1p [Saccharomyces cerevisiae FostersB]
          Length = 617

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L+A+     L+ V TKRMA+ LT++L  +N +   +H +    ER   +   +    D+L
Sbjct: 406 LSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADIL 465

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D   +         +  IGR  R  N+ V
Sbjct: 466 VATAVAARGLDIPNVTHVINYDLPSD-----IDDYVHRIGRTGRAGNTGV 510


>gi|322391693|ref|ZP_08065161.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
 gi|321145504|gb|EFX40897.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
          Length = 523

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|147678092|ref|YP_001212307.1| ATP-dependent DNA helicase RecG [Pelotomaculum thermopropionicum
           SI]
 gi|146274189|dbj|BAF59938.1| RecG-like helicase [Pelotomaculum thermopropionicum SI]
          Length = 690

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 5/92 (5%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           R+ R+  +H ++K  E+ +++   R G+  +LV   ++  G+D+P   ++ ILDAD+ G 
Sbjct: 506 RDCRLGLLHGQMKAEEKDKVMTSFRQGEIQILVTTTVIEVGVDVPNATVMIILDADRFGL 565

Query: 665 LRSKTSLIQTIGRAARNVN-SKVILYADTITK 695
                 L Q  GR  R  + S  IL AD  T+
Sbjct: 566 ----AQLHQLRGRVGRGSHQSYCILVADPKTE 593


>gi|125717559|ref|YP_001034692.1| RNA helicase [Streptococcus sanguinis SK36]
 gi|125497476|gb|ABN44142.1| RNA helicase, putative [Streptococcus sanguinis SK36]
          Length = 488

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 213 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 270

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 271 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 326

Query: 709 EKQLE 713
            K L+
Sbjct: 327 MKGLK 331


>gi|66805957|ref|XP_636700.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4]
 gi|74896924|sp|Q54IV3|DDX42_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx42; AltName:
           Full=DEAD box protein 42
 gi|60465098|gb|EAL63199.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4]
          Length = 986

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 7/130 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +++ L   QG  +L+ V TK   E L+  L +   +   +H +   +ER + I+  + GK
Sbjct: 542 NQLALLLSQG-SVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGK 600

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            ++L+  ++   GLDIP    V   D  ++  + S T     IGR  R  N+ V  Y   
Sbjct: 601 INILIATDVAARGLDIPLIKNVVNYDTSRD--IESHT---HRIGRTGRAGNTGV-AYTLI 654

Query: 693 ITKSIQLAID 702
             K I  ++D
Sbjct: 655 TPKDIHFSVD 664


>gi|330994820|ref|ZP_08318742.1| Transcription-repair-coupling factor [Gluconacetobacter sp. SXCC-1]
 gi|329758081|gb|EGG74603.1| Transcription-repair-coupling factor [Gluconacetobacter sp. SXCC-1]
          Length = 1160

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 7/155 (4%)

Query: 231 YYQPEAYV---PRTDTYIEKESSINEQIDRMRHSATRSLLERND---CIVVSSVSCIYGI 284
           +  P+A +   P  D       S N  I   R +    LLE+ D    ++ + +  +  +
Sbjct: 59  FVAPDAEILRFPGWDCLPYDRVSPNPAIVAERVATLTRLLEKADRPRIVLTTVMGLVQRV 118

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
               +++   + +  G+S++   L+  L+   Y R D  + +G F   G   +IFP+  E
Sbjct: 119 APRAAFAGQSITITAGESLDAPFLMELLIAHGYNRTDTVMEQGEFATRGGIFDIFPAG-E 177

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
               R+ +FG+++E I  F P T +    + ++ +
Sbjct: 178 SEPVRLDLFGDEVENIRRFDPGTQRSTAKITSLTM 212


>gi|325690149|gb|EGD32153.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK115]
          Length = 523

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|116511209|ref|YP_808425.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116106863|gb|ABJ72003.1| Superfamily II DNA and RNA helicase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 551

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 6/169 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  R   MH ++   +R+ ++RD + G  DVLV  ++   GLD+  
Sbjct: 248 TKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLVATDVAARGLDV-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     + + S +  IGR  R   S + + +          AI++ T +  
Sbjct: 306 SGVTHVYNYD---ITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAIEKLTNKEM 362

Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
           K L+   K      S+   + +V+  +  E         D Q  SL +K
Sbjct: 363 KGLKPPTKEEAYQASLSVAMDDVLRDLSDESGKAKLAKFDKQAASLLEK 411


>gi|198424291|ref|XP_002131481.1| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box
           protein 3, X-chromosomal) (Helicase-like protein 2)
           (HLP2) (DEAD box, X isoform) [Ciona intestinalis]
          Length = 733

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 5/119 (4%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N    + L ++ T  TK+ A+ L E+LY R  +   +H +    ER E +   R G+
Sbjct: 507 DLVNATDSKSLTLIFTE-TKKGADALDEFLYTRKYKSTSIHGDRTQREREEALLAFRTGE 565

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVI 687
           + +LV   +   GLDIP    V   D  +D + ++    +T  +  IG A    N+K +
Sbjct: 566 YPILVATAVAARGLDIPNVRHVINFDLPSDVDEYVHRIGRTGRVGNIGLATSFFNNKNV 624


>gi|50419477|ref|XP_458265.1| DEHA2C13486p [Debaryomyces hansenii CBS767]
 gi|74659403|sp|Q6BU54|DED1_DEBHA RecName: Full=ATP-dependent RNA helicase DED1
 gi|49653931|emb|CAG86342.1| DEHA2C13486p [Debaryomyces hansenii]
          Length = 630

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A   GL I+ T  TKRMA++L ++LY++      +H +    ER + +   + G   +LV
Sbjct: 410 ANDNGLTIIFTE-TKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKTGTAPILV 468

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
              +   GLDIP    +   D   +         +  IGR  R  N
Sbjct: 469 ATAVAARGLDIPNVSHIVNYDLPSD-----IDDYVHRIGRTGRAGN 509


>gi|282897435|ref|ZP_06305437.1| Type III restriction enzyme, res subunit [Raphidiopsis brookii D9]
 gi|281198087|gb|EFA72981.1| Type III restriction enzyme, res subunit [Raphidiopsis brookii D9]
          Length = 513

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 15/164 (9%)

Query: 574 EINLAAQQGLRILLTVLTKR--------MAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           EI L  +  +R+L  +L            A++ T Y   R + +  +  +    ER EI+
Sbjct: 315 EIALGTEGKMRVLADLLADHYPEMVLVFTADNTTVYRISRELLIPAITHQTPVKERHEIL 374

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              + G +  LV  ++L EG+D+P   +  IL     G +R  T  +  I R     N +
Sbjct: 375 TKFKQGTYTTLVASHVLNEGVDVPAAAVAIILSG--TGSIREYTQRLGRILRKGNQGNKR 432

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN-PQSVKEK 728
            ILY + I +      +E T  R K L   + H+ N P+  ++K
Sbjct: 433 AILY-EVIAEDTS---EEGTSIRRKGLRGMETHSGNRPEEKRKK 472


>gi|195499159|ref|XP_002096830.1| bel [Drosophila yakuba]
 gi|194182931|gb|EDW96542.1| bel [Drosophila yakuba]
          Length = 792

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R  R G   +LV   +   G
Sbjct: 558 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 617

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 618 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 661


>gi|71995724|ref|NP_490761.2| hypothetical protein Y65B4A.6 [Caenorhabditis elegans]
 gi|31746585|gb|AAK29954.2| Hypothetical protein Y65B4A.6 [Caenorhabditis elegans]
          Length = 399

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + +L   T+R  + LT+ + E N  V  MH +++  +R E++++ R
Sbjct: 258 DLYDTLTIT-----QAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  LV   D        ++   I  IGR+ R
Sbjct: 313 AGTTRVLISTDVWARGLDVPQVSLVINYD-----LPNNRELYIHRIGRSGR 358


>gi|17507121|ref|NP_491703.1| hypothetical protein F33D11.10 [Caenorhabditis elegans]
 gi|2773184|gb|AAB96704.1| Hypothetical protein F33D11.10 [Caenorhabditis elegans]
          Length = 399

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + +L   T+R  + LT+ + E N  V  MH +++  +R E++++ R
Sbjct: 258 DLYDTLTIT-----QAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  LV   D        ++   I  IGR+ R
Sbjct: 313 AGTTRVLISTDVWARGLDVPQVSLVINYD-----LPNNRELYIHRIGRSGR 358


>gi|314932725|ref|ZP_07840095.1| transcription-repair coupling factor [Staphylococcus caprae C87]
 gi|313654555|gb|EFS18307.1| transcription-repair coupling factor [Staphylococcus caprae C87]
          Length = 1169

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 83/184 (45%), Gaps = 21/184 (11%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK+G+ ++ +  L+ LV   Y+R+ +    G F + G  I+I+P  L     R+ +F  +
Sbjct: 141 LKVGEDIDVEAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGSPVRIELFDTE 198

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR- 415
           ++ I +F   T +   N++ + I   S Y+     +     ++KE  +    ++EK  R 
Sbjct: 199 VDSIRDFDVETQRSNENLDEVDITTASDYIITDEVIQYLQTHLKEAYEHTRPKIEKSVRN 258

Query: 416 ----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                 E+ +L +   +D ++L    +                 E P T+ +Y  +D+++
Sbjct: 259 DLKETYESFKLFESTFFDHQLLRRLVAFMY--------------EQPSTIIDYFRDDAVI 304

Query: 472 FVDE 475
            VDE
Sbjct: 305 AVDE 308


>gi|296190482|ref|XP_002743273.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Callithrix
           jacchus]
          Length = 437

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      ++++   TKR  + LTE + E N  V  +H ++   E   I+++ R
Sbjct: 270 DLYDTLTIT-----QVVIFCNTKRKVDWLTEKMREANFTVSSIHGDMPQKEWESIMKEFR 324

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 325 AGTSQVLISTDVWARGLDVPQVSLIITYD-----LTNNRELYIHRIGRSGR 370


>gi|134097431|ref|YP_001103092.1| transcription-repair coupling factor [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291004579|ref|ZP_06562552.1| transcription-repair coupling factor [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133910054|emb|CAM00166.1| transcription-repair coupling factor [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 1195

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 18/175 (10%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RP +++      A ++ +   +    + VE F S+ +    E   PR DT   + + +  
Sbjct: 53  RPVLLVTATGREAEEVAAAVSDLIGSDGVEVFPSW-ETLPHERLSPRADTVGRRLAVLRR 111

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKEL 308
                 H   R        ++V++V  +      G+G +       V+L++GD  + +EL
Sbjct: 112 LAHPEEHDHGRIR------VLVTTVRSLIQPIAPGLGELAP-----VRLRVGDEHDFEEL 160

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           +  L    Y R D+   RG F V G  +++FP   E+   RV  +G+++ E+  F
Sbjct: 161 VEKLAALAYNRVDMVEKRGEFAVRGGIVDVFPP-TEEHPLRVEFWGDEVTEVRPF 214


>gi|325918225|ref|ZP_08180371.1| helicase family protein with metal-binding cysteine cluster
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325535566|gb|EGD07416.1| helicase family protein with metal-binding cysteine cluster
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 831

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 33/182 (18%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI------IRPTG-----LVDPPV-----EIR-SAR 565
           P  I+ SAT G+      Q +I E++        PTG     L +PPV      +R SAR
Sbjct: 239 PQFILCSATIGN-PHAHAQALIEERVHAITESGAPTGDKHVLLWNPPVVNADLGLRASAR 297

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVKT 618
           +Q   +     +A + GL+ L+   T+ M E LT+YL +       +  R+R        
Sbjct: 298 SQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPARIRAYRGGYLP 354

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER E+ R +R G  D ++  + L  G+DI    +V +      G+  S  +  Q  GRA
Sbjct: 355 TERREVERAMRAGTIDGIISTSALELGVDIGALDVVIL-----NGYPGSVAATWQRFGRA 409

Query: 679 AR 680
            R
Sbjct: 410 GR 411


>gi|317477042|ref|ZP_07936284.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906835|gb|EFV28547.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 428

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 9/114 (7%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            A Q   R+++   +K   +++T+ L +  + V  MHS+++  +R E++ + + G+ ++L
Sbjct: 239 FAEQTPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINIL 298

Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  +++  G+DI +  LV   D   D E +       +  IGR AR  N  V L
Sbjct: 299 VATDIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAL 345


>gi|291240646|ref|XP_002740231.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked-like
           [Saccoglossus kowalevskii]
          Length = 694

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L ++LY    R   +H +    ER E +R  R G+  +LV   +   G
Sbjct: 490 LVFVETKKGADSLEDFLYRDGHRATSIHGDRSQREREEALRSFRTGQTPILVATAVAARG 549

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 550 LDIPNVKHVINFDMPSDIEEYVHRIGRTGRVGNLGLATSFFNDK 593


>gi|302502160|ref|XP_003013071.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371]
 gi|291176633|gb|EFE32431.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371]
          Length = 1490

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DL+ GK ++LV  ++L EG+D+  C LV   D  K+  LR   S +Q  GRA +  + 
Sbjct: 517 IADLKSGKKNLLVATSVLEEGIDVSACDLVVCFDPPKQ--LR---SFVQRRGRARKKSSK 571

Query: 685 KVILYA--DTITKSIQLAIDETTRRR 708
            VI YA  DT T     A+++  + R
Sbjct: 572 FVIFYAEDDTATYKDWEAMEDIMKER 597


>gi|160380607|sp|A6ZWD3|DBP1_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP1; AltName: Full=DEAD
           box protein 1; AltName: Full=Helicase CA1
 gi|151942679|gb|EDN61025.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
          Length = 617

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L+A+     L+ V TKRMA+ LT++L  +N +   +H +    ER   +   +    D+L
Sbjct: 406 LSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADIL 465

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D   +         +  IGR  R  N+ V
Sbjct: 466 VATAVAARGLDIPNVTHVINYDLPSD-----IDDYVHRIGRTGRAGNTGV 510


>gi|149012680|ref|ZP_01833656.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|168483538|ref|ZP_02708490.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1873-00]
 gi|169832933|ref|YP_001694988.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|194396853|ref|YP_002038215.1| ATP-dependent RNA helicase [Streptococcus pneumoniae G54]
 gi|225857209|ref|YP_002738720.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
 gi|225859340|ref|YP_002740850.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
 gi|147763280|gb|EDK70218.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|168995435|gb|ACA36047.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|172043152|gb|EDT51198.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1873-00]
 gi|194356520|gb|ACF54968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae G54]
 gi|225721382|gb|ACO17236.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
 gi|225724473|gb|ACO20325.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
          Length = 524

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 16/139 (11%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLEHNKKHNINPQSVKE 727
            K L+        P SV+E
Sbjct: 362 MKGLK--------PASVEE 372


>gi|13278456|gb|AAH04031.1| Ifih1 protein [Mus musculus]
          Length = 514

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           SEVK +   E+ E+I   R G+ ++L+   +  EGLDI EC +V      + G + ++ +
Sbjct: 250 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 304

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           ++Q  GR AR   S  +L   + +   +  I    R +      N+  N+ P+    KI+
Sbjct: 305 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 363

Query: 731 EVIDPILLEDAATTNISIDAQ 751
           E+    +LE       SI  Q
Sbjct: 364 ELQVQSILEKKMKVKRSIAKQ 384


>gi|329962827|ref|ZP_08300712.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
 gi|328529384|gb|EGF56297.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
          Length = 428

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 9/114 (7%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            A Q   R+++   +K   +++T+ L +  + V  MHS+++  +R E++ + + G+ ++L
Sbjct: 239 FAEQTPERVIIFASSKIKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINIL 298

Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  +++  G+DI +  LV   D   D E +       +  IGR AR  N  V L
Sbjct: 299 VATDIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAL 345


>gi|227545125|ref|ZP_03975174.1| ATP-dependent DNA helicase/translocase [Lactobacillus reuteri
           CF48-3A]
 gi|300909204|ref|ZP_07126665.1| competence protein FA [Lactobacillus reuteri SD2112]
 gi|227184913|gb|EEI64984.1| ATP-dependent DNA helicase/translocase [Lactobacillus reuteri
           CF48-3A]
 gi|300893069|gb|EFK86428.1| competence protein FA [Lactobacillus reuteri SD2112]
          Length = 444

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 90/195 (46%), Gaps = 18/195 (9%)

Query: 525 TIVVSATPGSWELEQCQG--IIVEQI-IRPTGLVDPPVEIRSA---RTQVE------DVY 572
            + ++ATPG   L + +   ++V  + +R  G + P +++R A   R ++E       V 
Sbjct: 235 CLYLTATPGDALLREIKSKRLVVNYLPLRYHGHLLPQIKVRLAFGWRRRLERQQLPPQVI 294

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            ++    ++G   LL V        +   L       R+       LER+E ++ +R G 
Sbjct: 295 QQLQETLKEGHHFLLFVPHIADLALVEAALRHSFTTFRFATVHASDLERLEKVQKMRDGD 354

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN---SKVILY 689
           +D LV  ++L  G+  PE   V +L AD   F  S ++L+Q  GRA R+ +    +VI +
Sbjct: 355 YDFLVTTSILERGVTFPEID-VYVLGADDPVF--SSSALVQIAGRAGRSQSRPTGRVIFW 411

Query: 690 ADTITKSIQLAIDET 704
            +   + +  A+ + 
Sbjct: 412 INCNCRQVNQAVSQV 426


>gi|312868533|ref|ZP_07728733.1| ATP-dependent DNA helicase RecG [Streptococcus parasanguinis F0405]
 gi|311096278|gb|EFQ54522.1| ATP-dependent DNA helicase RecG [Streptococcus parasanguinis F0405]
          Length = 671

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 5/98 (5%)

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           E  + +  RV  +H ++K+ E+  I++  +  + DVLV   ++  G+++P   ++ I+DA
Sbjct: 489 ETFFGQRARVSLLHGKMKSEEKDAIMQAFKEHQVDVLVSTTVIEVGVNVPNATVMVIMDA 548

Query: 660 DKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           D+ G     + L Q  GR  R N  S  IL A+  T S
Sbjct: 549 DRFGL----SQLHQLRGRVGRGNKQSYAILVANPKTDS 582


>gi|15901428|ref|NP_346032.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           TIGR4]
 gi|15903483|ref|NP_359033.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae R6]
 gi|111657434|ref|ZP_01408185.1| hypothetical protein SpneT_02001363 [Streptococcus pneumoniae
           TIGR4]
 gi|116516011|ref|YP_816872.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39]
 gi|148988638|ref|ZP_01820071.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|148993389|ref|ZP_01822906.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|148997346|ref|ZP_01824951.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|149003176|ref|ZP_01828072.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007498|ref|ZP_01831133.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP18-BS74]
 gi|168486852|ref|ZP_02711360.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1087-00]
 gi|168488692|ref|ZP_02712891.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae SP195]
 gi|168575216|ref|ZP_02721179.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae MLV-016]
 gi|237650716|ref|ZP_04524968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
           1974]
 gi|237821935|ref|ZP_04597780.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
           1974M2]
 gi|303256042|ref|ZP_07342065.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS455]
 gi|303260214|ref|ZP_07346186.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP-BS293]
 gi|303262605|ref|ZP_07348546.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265007|ref|ZP_07350922.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS397]
 gi|303266470|ref|ZP_07352358.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS457]
 gi|303269052|ref|ZP_07354834.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS458]
 gi|307068227|ref|YP_003877193.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
 gi|61223743|sp|P0A4D7|EXP9_STRPN RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
           Full=Exported protein 9
 gi|61223744|sp|P0A4D8|EXP9_STRR6 RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
           Full=Exported protein 9
 gi|14973078|gb|AAK75672.1| putative ATP-dependent RNA helicase [Streptococcus pneumoniae
           TIGR4]
 gi|15459096|gb|AAL00244.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076587|gb|ABJ54307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39]
 gi|147756401|gb|EDK63442.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|147758636|gb|EDK65633.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760857|gb|EDK67827.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP18-BS74]
 gi|147925839|gb|EDK76914.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|147927944|gb|EDK78964.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|183570214|gb|EDT90742.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1087-00]
 gi|183572869|gb|EDT93397.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae SP195]
 gi|183578956|gb|EDT99484.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae MLV-016]
 gi|301794592|emb|CBW37036.1| DEAD box helicase family protein [Streptococcus pneumoniae INV104]
 gi|301802300|emb|CBW35052.1| DEAD box helicase family protein [Streptococcus pneumoniae INV200]
 gi|302597002|gb|EFL64125.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS455]
 gi|302636322|gb|EFL66816.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638711|gb|EFL69174.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP-BS293]
 gi|302641442|gb|EFL71807.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS458]
 gi|302644048|gb|EFL74307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS457]
 gi|302645526|gb|EFL75758.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS397]
 gi|306409764|gb|ADM85191.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
 gi|332072430|gb|EGI82913.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17570]
 gi|332199626|gb|EGJ13701.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA41317]
 gi|332200146|gb|EGJ14219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA47368]
 gi|332201024|gb|EGJ15095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA47901]
          Length = 524

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 16/139 (11%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLEHNKKHNINPQSVKE 727
            K L+        P SV+E
Sbjct: 362 MKGLK--------PASVEE 372


>gi|297622549|ref|YP_003703983.1| ATP-dependent DNA helicase RecG [Truepera radiovictrix DSM 17093]
 gi|297163729|gb|ADI13440.1| ATP-dependent DNA helicase RecG [Truepera radiovictrix DSM 17093]
          Length = 762

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 32/220 (14%)

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V   +M EDL   + E   R+  +H ++   E+ E++   R  +FD+LV   ++  G+DI
Sbjct: 564 VSATKMFEDLQALMPE-ACRLGLLHGKMTGPEKDEVMERFRRHEFDLLVSTTVIEVGVDI 622

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           P   ++ I +A++ G     + L Q  GR  R  +    +          L   + ++R 
Sbjct: 623 PNASVMIIENAERFGL----SQLHQLRGRVGRGEHESFCI----------LVAGDRSKRT 668

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLE--------DAATTNISIDAQQLSLSKKKG 760
           + +L   +KH  +   + EK +E+  P  L+        D    ++S D + +  S++  
Sbjct: 669 QHRLSVIEKHT-DGFVIAEKDLELRGPGELKGTRQSGMPDLVLGDLSKDTELIERSRE-- 725

Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
                 L K+M  A   L    A R+R+E+KR   +  F+
Sbjct: 726 ------LAKKMLAADPKLEAPWATRLREELKRRSRAVAFR 759


>gi|296140872|ref|YP_003648115.1| transcription-repair coupling factor [Tsukamurella paurometabola
           DSM 20162]
 gi|296029006|gb|ADG79776.1| transcription-repair coupling factor [Tsukamurella paurometabola
           DSM 20162]
          Length = 1218

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 21/180 (11%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
           A Q P +V+      A  L SE +     +AV  F S+ +    E   P  DT       
Sbjct: 54  AGQAPVLVVTATGREADDLTSELRETLGADAVTQFPSW-ETLPHERLSPGADT------- 105

Query: 251 INEQIDRMRHSATRSLLERNDCI--VVSSVSCIY-----GIGSVESYSQMIVQLKIGDSV 303
           +  ++  +R  A     +    +  VV++V  +      G+G   S     V L+ G+  
Sbjct: 106 VGRRLQVLRRLAWPDDAQYGAPLRAVVATVRSLVQPMAPGLGDAPS-----VTLREGEEF 160

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           + +EL+ +LV+  Y R D+   RG F V G  ++IFP+   D+  RV  +G++I ++  F
Sbjct: 161 DFEELIETLVELAYTRVDMVGKRGEFAVRGGILDIFPT-TTDLPVRVEFWGDEITDLRAF 219


>gi|258539134|ref|YP_003173633.1| comF operon protein 1 [Lactobacillus rhamnosus Lc 705]
 gi|257150810|emb|CAR89782.1| ComF operon protein 1 [Lactobacillus rhamnosus Lc 705]
          Length = 421

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           LL V     AE L   L  R I ++         +R E +   R G+ +VLV   +L  G
Sbjct: 299 LLFVPKISWAEQLAGKL--RQIGLKAAGVASTDAQRAEKVTAFRQGQLEVLVTTTILERG 356

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS---KVILYADTITKSI 697
           + +P C +  +  AD E    S ++LIQ  GRA R  +S    V+ ++D  T ++
Sbjct: 357 VTVPRCAVAVLAAADPEF---SASALIQIAGRAGRAADSPDDPVVFFSDRYTLAM 408


>gi|170578338|ref|XP_001894368.1| ATP-dependent helicase DDX48 [Brugia malayi]
 gi|158599081|gb|EDP36794.1| ATP-dependent helicase DDX48, putative [Brugia malayi]
          Length = 399

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + L E L E N  V  MH E++  ER  I+++ R
Sbjct: 263 DLYDTLTIT-----QAVIFCNTRRKVDWLAEKLKEANFTVSSMHGEMEQKERDAIMKEFR 317

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   +L+  ++   GLDIP+  LV   D        ++   I  IGR+ R
Sbjct: 318 GGASRLLISTDVFARGLDIPQVSLVVNYD-----LPNNRELYIHRIGRSGR 363


>gi|125623238|ref|YP_001031721.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492046|emb|CAL96974.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069989|gb|ADJ59389.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 551

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 6/169 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  R   MH ++   +R+ ++RD + G  DVLV  ++   GLD+  
Sbjct: 248 TKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLVATDVAARGLDV-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     + + S +  IGR  R   S + + +          AI++ T +  
Sbjct: 306 SGVTHVYNYD---ITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAIEKLTNKEM 362

Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
           K L+   K      S+   + +V+  +  E         D Q  SL +K
Sbjct: 363 KGLKPPTKEEAYQASLSVAMDDVLRDLSDESGKAKLAKFDKQAASLLEK 411


>gi|326569194|gb|EGE19255.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC7]
          Length = 581

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   TK   E L   L E   + RY+H ++   +R  I+ D++ GK DVLV  ++   G
Sbjct: 262 VIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARG 321

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +DI     V   D       R     +  IGR  R   + V +   +I  + QL
Sbjct: 322 IDISAISHVINYD-----LPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQL 370


>gi|320532424|ref|ZP_08033259.1| conserved domain protein [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320135361|gb|EFW27474.1| conserved domain protein [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 294

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 10/151 (6%)

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            +++ P   V    ++      E   PR DT  ++ S +          A R L+     
Sbjct: 23  LRSYLPAEDVAVMPAWETLPH-ERLSPRADTVAQRLSVLRRLAHPEEGGAIRVLIVPVRA 81

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++      I G+G +E      VQL  G +V  +E    L    Y R D+   RG + V 
Sbjct: 82  LLAP---VIAGLGELEP-----VQLAPGLAVGLEETARRLEAAAYTRVDMVESRGEYAVR 133

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           G  +++FP   E    RV  FG++I+E+S F
Sbjct: 134 GGILDVFPPS-EPRPVRVDFFGDEIDEVSSF 163


>gi|223044420|ref|ZP_03614453.1| transcription-repair coupling factor [Staphylococcus capitis SK14]
 gi|222442209|gb|EEE48321.1| transcription-repair coupling factor [Staphylococcus capitis SK14]
          Length = 1169

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 83/184 (45%), Gaps = 21/184 (11%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK+G+ ++ +  L+ LV   Y+R+ +    G F + G  I+I+P  L     R+ +F  +
Sbjct: 141 LKVGEDIDVEAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGSPVRIELFDTE 198

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR- 415
           ++ I +F   T +   N++ + I   S Y+     +     ++KE  +    ++EK  R 
Sbjct: 199 VDSIRDFDVETQRSNENLDEVDITTASDYIITDEVIQHLQTHLKEAYEHTRPKIEKSVRN 258

Query: 416 ----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                 E+ +L +   +D ++L    +                 E P T+ +Y  +D+++
Sbjct: 259 DLKETYESFKLFESTFFDHQLLRRLVAFMY--------------EQPSTIIDYFRDDAVI 304

Query: 472 FVDE 475
            VDE
Sbjct: 305 AVDE 308


>gi|221131953|ref|XP_002164829.1| PREDICTED: similar to LOC556764 protein [Hydra magnipapillata]
          Length = 674

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR  +D+T  L +       +H +    ER  ++++ R GK  +L+  ++  
Sbjct: 355 KTIIFCETKRKTDDITRRLRKDGWPAMCIHGDKSQPEREWVLKEFRSGKAPILIATDVAS 414

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDIP+   V   D     +  S    I  IGR AR  N+
Sbjct: 415 RGLDIPDINFVVNYD-----YPNSGEDYIHRIGRTARAGNT 450


>gi|218131071|ref|ZP_03459875.1| hypothetical protein BACEGG_02675 [Bacteroides eggerthii DSM 20697]
 gi|217986775|gb|EEC53108.1| hypothetical protein BACEGG_02675 [Bacteroides eggerthii DSM 20697]
          Length = 428

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 9/114 (7%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            A Q   R+++   +K   +++T+ L +  + V  MHS+++  +R E++ + + G+ ++L
Sbjct: 239 FAEQTPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINIL 298

Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  +++  G+DI +  LV   D   D E +       +  IGR AR  N  V L
Sbjct: 299 VATDIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAL 345


>gi|328773151|gb|EGF83188.1| hypothetical protein BATDEDRAFT_29188 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 472

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           Q+GLR  +L+ V +   A++L   L    I V  MHSE    +R  II++ R GK  VL+
Sbjct: 272 QEGLRPPVLIFVQSIDRAKELFHELVYDGINVDVMHSERTQTQRDTIIKNFRCGKIWVLI 331

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+  G+D     LV   D     F ++  S +  IGR  R
Sbjct: 332 ATELMARGIDFKGVNLVINYD-----FPQTVQSYVHRIGRTGR 369


>gi|118462797|ref|YP_882989.1| ATP-dependent DNA helicase RecG [Mycobacterium avium 104]
 gi|118164084|gb|ABK64981.1| ATP-dependent DNA helicase RecG [Mycobacterium avium 104]
          Length = 738

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 595 AEDLTEYLYER-------NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           A +  E LY R        +R+  MH  +   E+  ++   R G  DVLV   ++  G+D
Sbjct: 539 APETAEGLYARLRSQELAQLRLGLMHGRLSAEEKDAVMAAFRAGDIDVLVCTTVIEVGVD 598

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           +P   ++ ++DAD+ G     + L Q  GR  R  +  + L+A
Sbjct: 599 VPNATVMLVMDADRFGI----SQLHQLRGRIGRGEHPSLCLFA 637


>gi|270293148|ref|ZP_06199359.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M143]
 gi|270279127|gb|EFA24973.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M143]
          Length = 520

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|118374174|ref|XP_001020279.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89302045|gb|EAS00033.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 475

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++L + L E+N+ V  MH E+    R  I+++ R G   VL+  +LL  G+DI +
Sbjct: 349 TKKRVDELRDKLIEKNMTVSAMHGEMDQQNRDLIMKEFRTGTSRVLITTDLLSRGIDIHQ 408

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D   +     K S I  IGR+ R
Sbjct: 409 VNLVINYDLPLK-----KESYIHRIGRSGR 433


>gi|222099483|ref|YP_002534051.1| Primosomal protein N [Thermotoga neapolitana DSM 4359]
 gi|61657423|emb|CAI44338.1| primosomal protein N [Thermotoga sp. RQ7]
 gi|221571873|gb|ACM22685.1| Primosomal protein N [Thermotoga neapolitana DSM 4359]
          Length = 735

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 15/144 (10%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+++  +L  Y  ER +           +E  + I  L  G+ D+LVG  ++ +  D+PE
Sbjct: 505 TEKIERELQRYFPERRVMRIDREVVEDVMEVEDYINRLISGEIDILVGTRMVTKSFDVPE 564

Query: 651 CGLVAILDADKEGF-------LRSKTSLIQTIGRAARNVNSKVILYA-----DTITKSIQ 698
            GLV +LD D   F       LR    ++Q  GRA+R    + IL       + I ++I+
Sbjct: 565 IGLVCVLDVDSLIFLPDFSASLRVFQLIVQVFGRASRKGTGRAILQTYNPDEEVIMRAIK 624

Query: 699 LAIDETTRRREKQLEHNKKHNINP 722
              ++     E++LE  K     P
Sbjct: 625 ---EDVEGFYERELERRKSLGYPP 645


>gi|225861416|ref|YP_002742925.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230290|ref|ZP_06963971.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255231|ref|ZP_06978817.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503322|ref|YP_003725262.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727400|gb|ACO23251.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238917|gb|ADI70048.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327389770|gb|EGE88115.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA04375]
          Length = 524

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 16/139 (11%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLEHNKKHNINPQSVKE 727
            K L+        P SV+E
Sbjct: 362 MKGLK--------PASVEE 372


>gi|6324778|ref|NP_014847.1| Ded1p [Saccharomyces cerevisiae S288c]
 gi|118411|sp|P06634|DED1_YEAST RecName: Full=ATP-dependent RNA helicase DED1; AltName: Full=DEAD
           box protein 1
 gi|3647|emb|CAA40546.1| Ded1p (Spp81p) [Saccharomyces cerevisiae]
 gi|1420479|emb|CAA99419.1| DED1 [Saccharomyces cerevisiae]
 gi|285815083|tpg|DAA10976.1| TPA: Ded1p [Saccharomyces cerevisiae S288c]
          Length = 604

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A+  GL  L+ V TKRMA+ LT++L  +N R   +H +    ER   +   R G   +LV
Sbjct: 396 ASTDGL-TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLV 454

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              +   GLDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 455 ATAVAARGLDIPNVTHVINYDLPSD-----VDDYVHRIGRTGRAGNTGL 498


>gi|312081503|ref|XP_003143055.1| ATP-dependent helicase DDX48 [Loa loa]
 gi|307761780|gb|EFO21014.1| ATP-dependent helicase DDX48 [Loa loa]
          Length = 399

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + L E L E N  V  MH E++  ER  I+++ R
Sbjct: 263 DLYDTLTIT-----QAVIFCNTRRKVDWLAEKLKEANFTVSSMHGEMEQKERDAIMKEFR 317

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   +L+  ++   GLDIP+  LV   D        ++   I  IGR+ R
Sbjct: 318 GGASRLLISTDVFARGLDIPQVSLVVNYDLPN-----NRELYIHRIGRSGR 363


>gi|326561884|gb|EGE12219.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 7169]
 gi|326563318|gb|EGE13585.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 46P47B1]
 gi|326565972|gb|EGE16133.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 103P14B1]
 gi|326568894|gb|EGE18963.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC1]
 gi|326571867|gb|EGE21872.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC8]
 gi|326575379|gb|EGE25304.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 101P30B1]
 gi|326576534|gb|EGE26442.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis CO72]
          Length = 581

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   TK   E L   L E   + RY+H ++   +R  I+ D++ GK DVLV  ++   G
Sbjct: 262 VIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARG 321

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +DI     V   D       R     +  IGR  R   + V +   +I  + QL
Sbjct: 322 IDISAISHVINYD-----LPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQL 370


>gi|312372006|gb|EFR20059.1| hypothetical protein AND_20736 [Anopheles darlingi]
          Length = 850

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+LY  +  V  +H +    ER E +R  R G+  +LV   +   G
Sbjct: 618 LIFVETKKAADSLEEFLYSYDYPVTSIHGDRSQDEREEALRLFRCGRCPILVATAVAARG 677

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           LDIP    V   D   E         +  IGR  R  N
Sbjct: 678 LDIPNVKHVINFDLPSE-----VEEYVHRIGRTGRMGN 710


>gi|229551736|ref|ZP_04440461.1| superfamily II DNA/RNA helicase [Lactobacillus rhamnosus LMS2-1]
 gi|229314867|gb|EEN80840.1| superfamily II DNA/RNA helicase [Lactobacillus rhamnosus LMS2-1]
          Length = 423

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           LL V     AE L   L  R I ++         +R E +   R G+ +VLV   +L  G
Sbjct: 301 LLFVPKISWAEQLAGKL--RQIGLKAAGVASTDAQRAEKVTAFRQGQLEVLVTTTILERG 358

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS---KVILYADTITKSI 697
           + +P C +  +  AD E    S ++LIQ  GRA R  +S    V+ ++D  T ++
Sbjct: 359 VTVPRCAVAVLAAADPEF---SASALIQIAGRAGRAADSPDDPVVFFSDRYTLAM 410


>gi|56965701|ref|YP_177435.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
 gi|56911947|dbj|BAD66474.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
          Length = 493

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 15/141 (10%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L +R  R   +H ++   +R  ++R  + G  DVLV  ++   GLDI  
Sbjct: 250 TKRRVDELAEALIKRGYRAEGLHGDLNQAKRNSVLRKFKEGLIDVLVATDVAARGLDI-- 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR-- 708
            G+  + + D     +   S +  IGR  R   S + +   T  +   + + E+  +R  
Sbjct: 308 SGVTHVFNFD---LPQDPESYVHRIGRTGRAGRSGIAITLATKPEREHVKLIESVSKRRM 364

Query: 709 --------EKQLEHNKKHNIN 721
                   E+ LE  K+  +N
Sbjct: 365 TQRPKPTYEEALEGQKQSTLN 385


>gi|312074866|ref|XP_003140162.1| ATP-dependent RNA helicase An3 [Loa loa]
 gi|307764673|gb|EFO23907.1| ATP-dependent RNA helicase An3 [Loa loa]
          Length = 603

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +++   +GL ++  V TKR A DL  YL   N  V  +H ++K  ER   +   R G+ +
Sbjct: 308 LDIDVNRGLALVF-VETKRGANDLAWYLQRNNYNVMPIHGDLKQYERERHLEMFRSGQTN 366

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +LV   +   GLDIP    V   D   +         +  IGR  R  N
Sbjct: 367 ILVATAVAARGLDIPNVKHVINFDLPTD-----IDEYVHRIGRTGRAGN 410


>gi|308175279|ref|YP_003921984.1| helicase competence protein [Bacillus amyloliquefaciens DSM 7]
 gi|307608143|emb|CBI44514.1| helicase competence protein [Bacillus amyloliquefaciens DSM 7]
 gi|328555252|gb|AEB25744.1| helicase competence protein [Bacillus amyloliquefaciens TA208]
 gi|328913613|gb|AEB65209.1| helicase competence protein [Bacillus amyloliquefaciens LL3]
          Length = 461

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 8/133 (6%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           V D +    Q  L + L V +  +    T+Y  + NIR   +H+E     R + ++  R 
Sbjct: 316 VTDWVRQKLQSRLPVFLFVPSVHILRKTTDYFQKLNIRAEGVHAEDTC--RKDKVKRFRE 373

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NVNSKVI 687
           G+FD+LV   +L  G+ +P+     +L A+   F  ++++L+Q  GR  R   + +  V+
Sbjct: 374 GRFDLLVTTTILERGVTVPKVQ-TCVLGAEAPIF--TESALVQIAGRTGRHYKHFSGDVV 430

Query: 688 LYADTITKSIQLA 700
           ++   +T  ++ A
Sbjct: 431 MFHFGMTNGMKKA 443


>gi|284050398|ref|ZP_06380608.1| primosome assembly protein PriA [Arthrospira platensis str. Paraca]
          Length = 875

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 16/145 (11%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+R+A++LT    E R IR     +  K   RI ++      + D+LVG  +L +GLD+ 
Sbjct: 638 TQRVAQELTRLFPELRFIRFDSDTTRTKNAHRI-LLTQFANREADLLVGTQMLTKGLDLD 696

Query: 650 ECGLVAILDADKEGFL---------RSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQL 699
             GLV I+ AD  G L         R+  +L+Q  GRA R N   +VIL   T    +  
Sbjct: 697 SVGLVGIVSAD--GLLHLSDYRANERAFQTLLQVAGRAGRGNDPGQVILQTYTPEHPVVE 754

Query: 700 AIDETTRRR--EKQLEHNKKHNINP 722
           A+         E +L+H  + N  P
Sbjct: 755 AVRNHAYDSFVETELQHRSELNYPP 779


>gi|41409107|ref|NP_961943.1| hypothetical protein MAP3009c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397927|gb|AAS05557.1| RecG [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 738

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 595 AEDLTEYLYER-------NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           A +  E LY R        +R+  MH  +   E+  ++   R G  DVLV   ++  G+D
Sbjct: 539 APETAEGLYARLRSQELAQLRLGLMHGRLSAEEKDAVMAAFRAGDIDVLVCTTVIEVGVD 598

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           +P   ++ ++DAD+ G     + L Q  GR  R  +  + L+A
Sbjct: 599 VPNATVMLVMDADRFGI----SQLHQLRGRIGRGEHPSLCLFA 637


>gi|158317692|ref|YP_001510200.1| ATP-dependent DNA helicase RecQ [Frankia sp. EAN1pec]
 gi|158113097|gb|ABW15294.1| ATP-dependent DNA helicase, RecQ family [Frankia sp. EAN1pec]
          Length = 749

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 21/159 (13%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +LA   G  I+ T LTK  AE+LT +L  +   V   H   +  ERI    DL   +   
Sbjct: 284 HLAELPGSGIIYT-LTKPGAEELTAFLRGQGHEVTTYHGGTEPAERIAAEEDLLGNRVKA 342

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTIT 694
           LV  + L  G D P+ G V  + A       S  +  Q IGRA R V S +V+L   T  
Sbjct: 343 LVATSALGMGFDKPDLGFVVHVGAPN-----SPIAYYQQIGRAGRAVESAEVVLLPATED 397

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           + I     +T+                P+ V  ++++V+
Sbjct: 398 RDIWRYFADTS--------------FPPEPVARQVLDVL 422


>gi|238018751|ref|ZP_04599177.1| hypothetical protein VEIDISOL_00609 [Veillonella dispar ATCC 17748]
 gi|237864517|gb|EEP65807.1| hypothetical protein VEIDISOL_00609 [Veillonella dispar ATCC 17748]
          Length = 1098

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 108/249 (43%), Gaps = 42/249 (16%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIE-AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           R+   ++ G++GS K+F + +     + +P +++  +K    +++     FF  N     
Sbjct: 24  RKGKSVIYGLSGSQKSFLLNQAFSTGLTKPVVIVVHDKD-HKEMWERDLAFFWTNI---- 78

Query: 226 VSYYDYYQPEAYVPRTD--TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
                   P    P TD   +     S+ +Q  +MR  A   LL   +  VV        
Sbjct: 79  --------PVLSFPITDHVDFTTIARSLEDQGAQMRALA---LLAWQEPAVV-------- 119

Query: 284 IGSVESYSQMIV----------QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           I + E  +Q +V             + D++E+   L  LV   Y+R D    RG F V G
Sbjct: 120 IANAEEVTQYVVSPQYLKGQSLHFSLNDTIERDTALEQLVTIGYERVDQVEQRGHFAVRG 179

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D ++I+P + E    R+  FG++I+ +  F+ +  Q  R++E I  Y  + +   +   +
Sbjct: 180 DILDIYPVNSEHPI-RIEFFGDEIDTL-RFFSVENQ--RSIEQIDSYTVTPFFLGKSDAD 235

Query: 394 -TAMKYIKE 401
            T + Y+KE
Sbjct: 236 CTLLSYVKE 244



 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           M E L E L    +R    H ++   +  EI+ D   G +DVL+  +++  GLDIP    
Sbjct: 773 MGELLEEAL--PGLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANT 830

Query: 654 VAILDADKEGF 664
           + I DAD+ G 
Sbjct: 831 IIIYDADRLGL 841


>gi|199597232|ref|ZP_03210663.1| Superfamily II DNA/RNA helicase required for DNA uptake (late
           competence protein) [Lactobacillus rhamnosus HN001]
 gi|199591748|gb|EDY99823.1| Superfamily II DNA/RNA helicase required for DNA uptake (late
           competence protein) [Lactobacillus rhamnosus HN001]
          Length = 421

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           LL V     AE L   L  R I ++         +R E +   R G+ +VLV   +L  G
Sbjct: 299 LLFVPKISWAEQLAGKL--RQIGLKAAGVASTDAQRAEKVTAFRQGQLEVLVTTTILERG 356

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS---KVILYADTITKSI 697
           + +P C +  +  AD E    S ++LIQ  GRA R  +S    V+ ++D  T ++
Sbjct: 357 VTVPRCAVAVLAAADPEF---SASALIQIAGRAGRAADSPDDPVVFFSDRYTLAM 408


>gi|209542295|ref|YP_002274524.1| transcription-repair coupling factor [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209529972|gb|ACI49909.1| transcription-repair coupling factor [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 1156

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 7/143 (4%)

Query: 231 YYQPEAYV---PRTDTYIEKESSINEQIDRMRHSATRSLLERNDC--IVVSSVS-CIYGI 284
           +  P A +   P  D       S N  I   R +    LLE      IV+++V   +  +
Sbjct: 56  FVAPNAEILRFPSWDCLPYDRVSPNPAIVAERVATLTRLLEPATAPRIVLTTVGGLVQRV 115

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
               ++    + L  GDS++Q  L+  LV   Y R D  +  G F   G   +IFPS  E
Sbjct: 116 APRAAFRGQSLTLAAGDSLDQALLIDLLVAAGYNRTDTVMEPGEFATRGGIFDIFPSG-E 174

Query: 345 DVAWRVSMFGNDIEEISEFYPLT 367
               R+ +FG+++E I  F P T
Sbjct: 175 AEPVRLDLFGDEVENIRRFDPAT 197


>gi|227524|prf||1705300A ATP dependent RNA helicase
          Length = 604

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A+  GL  L+ V TKRMA+ LT++L  +N R   +H +    ER   +   R G   +LV
Sbjct: 396 ASTDGL-TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLV 454

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              +   GLDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 455 ATAVAARGLDIPNVTHVINYDLPSD-----VDDYVHRIGRTGRAGNTGL 498


>gi|327303976|ref|XP_003236680.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892]
 gi|326462022|gb|EGD87475.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892]
          Length = 1460

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DL+ GK ++LV  ++L EG+D+  C LV   D  K+  LR   S +Q  GRA +  + 
Sbjct: 508 IDDLKSGKKNLLVATSVLEEGIDVSACDLVVCFDPPKQ--LR---SFVQRRGRARKKSSK 562

Query: 685 KVILYA--DTITKSIQLAIDETTRRR 708
            VI YA  DT T     A+++  + R
Sbjct: 563 FVIFYAEDDTATYKDWEAMEDIMKER 588


>gi|61657313|emb|CAI44233.1| primosomal protein N [Thermotoga neapolitana]
 gi|61657335|emb|CAI44254.1| primosomal protein N [Thermotoga neapolitana]
          Length = 734

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+++  +L  Y  ER +           +E  + I  L  G+ D+LVG  ++ +  D+PE
Sbjct: 504 TEKIERELQRYFPERRVMRIDREVVEDVMEVEDYINRLISGEIDILVGTRMVTKSFDVPE 563

Query: 651 CGLVAILDADKEGF-------LRSKTSLIQTIGRAARNVNSKVIL 688
            GLV +LD D   F       LR    ++Q  GRA+R    + IL
Sbjct: 564 IGLVCVLDVDSLIFLPDFSASLRVFQLIVQVFGRASRKGTGRAIL 608


>gi|329767249|ref|ZP_08258776.1| transcription-repair coupling factor [Gemella haemolysans M341]
 gi|328836916|gb|EGF86563.1| transcription-repair coupling factor [Gemella haemolysans M341]
          Length = 1183

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 85/183 (46%), Gaps = 17/183 (9%)

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           EL   LV   Y+R +   + G F   G  ++IF S L +   R+  F ++++ +  F  L
Sbjct: 142 ELQKKLVNMGYRRVETVDVVGEFSKRGSIVDIF-SPLSEKPIRLDFFDDELDSMRTFDEL 200

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           T + +  +++  IY  S +       +  ++ I  +L         + +L E +  ++  
Sbjct: 201 TQRSLEKIDSGVIYPTSDFFLTSEEKDVVVERILTKLN--------DTKLREEENYQEIS 252

Query: 427 TY---DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
           TY    +E+ + TG    +E++S  +      E   ++ +Y+ +D+++F D  H  + +I
Sbjct: 253 TYLQEKIEIYKATGDFSDLESFSNLVY-----ENTYSIADYLTDDTIIFYDNYHKILEKI 307

Query: 484 SGM 486
            G+
Sbjct: 308 EGL 310


>gi|315612763|ref|ZP_07887674.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
 gi|315314873|gb|EFU62914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
          Length = 525

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|189237234|ref|XP_970515.2| PREDICTED: similar to eukaryotic initiation factor 4A [Tribolium
            castaneum]
          Length = 1983

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 7/98 (7%)

Query: 570  DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            D+YD +++      + ++   T+R  + LTE +++R+  V  MH +++  ER  I+R  R
Sbjct: 1842 DLYDTLSIT-----QAVIFCNTRRKVDWLTENMHKRDFTVSAMHGDMEQRERDVIMRQFR 1896

Query: 630  LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
             G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 1897 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 1934


>gi|168491523|ref|ZP_02715666.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC0288-04]
 gi|168493488|ref|ZP_02717631.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC3059-06]
 gi|182684538|ref|YP_001836285.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           CGSP14]
 gi|221232344|ref|YP_002511497.1| DEAD/DEAH box helicase [Streptococcus pneumoniae ATCC 700669]
 gi|225855026|ref|YP_002736538.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae JJA]
 gi|182629872|gb|ACB90820.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           CGSP14]
 gi|183574224|gb|EDT94752.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC0288-04]
 gi|183576330|gb|EDT96858.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC3059-06]
 gi|220674805|emb|CAR69378.1| DEAD box helicase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225724107|gb|ACO19960.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae JJA]
          Length = 524

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 16/139 (11%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLEHNKKHNINPQSVKE 727
            K L+        P SV+E
Sbjct: 362 MKGLK--------PASVEE 372


>gi|76609700|ref|XP_615590.2| PREDICTED: interferon induced with helicase C domain 1-like [Bos
           taurus]
 gi|297471684|ref|XP_002685384.1| PREDICTED: interferon induced with helicase C domain 1-like [Bos
           taurus]
 gi|296490601|gb|DAA32714.1| interferon induced with helicase C domain 1-like [Bos taurus]
          Length = 1021

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 6/132 (4%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ E+I   R GK ++L+   +  EGLDI EC +V      + G + ++ +++Q  GR A
Sbjct: 765 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 818

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           R   S  +L A + +  ++       R +      ++  N+ P+    KI+E+    ++E
Sbjct: 819 RADESTYVLVAQSGSGVVERETVNDFREKMMYKAIDRVQNMKPEEYAHKILELQMQSIME 878

Query: 740 DAATTNISIDAQ 751
               T  SI  Q
Sbjct: 879 KKMKTKRSIAKQ 890


>gi|295673975|ref|XP_002797533.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226280183|gb|EEH35749.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 1450

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 6/68 (8%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DLR GK ++L+  ++L EG+D+  C LV   DA     +++  S IQ  GR AR  +S
Sbjct: 467 IDDLRSGKKNLLIATSVLEEGIDVSACHLVVCFDA-----IKNLRSFIQRRGR-ARKEHS 520

Query: 685 KVILYADT 692
           K +++ D+
Sbjct: 521 KFVMFLDS 528


>gi|322375696|ref|ZP_08050208.1| ATP-dependent DNA helicase RecG [Streptococcus sp. C300]
 gi|321279404|gb|EFX56445.1| ATP-dependent DNA helicase RecG [Streptococcus sp. C300]
          Length = 671

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H ++K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTAH-FAGKAEVSLLHGKMKSDEKDQIMQDFKEQKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T+S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTES 582


>gi|306829117|ref|ZP_07462307.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
           6249]
 gi|304428203|gb|EFM31293.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
           6249]
          Length = 525

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|71018173|ref|XP_759317.1| hypothetical protein UM03170.1 [Ustilago maydis 521]
 gi|74701966|sp|Q4P9P3|DRS1_USTMA RecName: Full=ATP-dependent RNA helicase DRS1
 gi|46099167|gb|EAK84400.1| hypothetical protein UM03170.1 [Ustilago maydis 521]
          Length = 932

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 10/149 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V +K++A  L        +    +H ++   +RI+ + D R GK D L+  +L   G
Sbjct: 615 MIFVRSKKLAHQLKIVFGLLGLSAGELHGDLSQEQRIDALTDFRDGKTDFLLATDLASRG 674

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LDI   G+  +++ D  G   +    +    RA RN  + V L  +   + ++LAI    
Sbjct: 675 LDIK--GVQTVINYDMPGQFEAYLHRVGRTARAGRNGRA-VTLVGEADRRMLKLAI---- 727

Query: 706 RRREKQLEHNKKHNINPQSVKEKIMEVID 734
              +K      KH I P +V   + E ++
Sbjct: 728 ---KKSSAEQIKHRIIPSAVAAHMCETLE 753


>gi|326563433|gb|EGE13698.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 12P80B1]
          Length = 581

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   TK   E L   L E   + RY+H ++   +R  I+ D++ GK DVLV  ++   G
Sbjct: 262 VIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARG 321

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +DI     V   D       R     +  IGR  R   + V +   +I  + QL
Sbjct: 322 IDISAISHVINYD-----LPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQL 370


>gi|323352003|gb|EGA84542.1| Dbp1p [Saccharomyces cerevisiae VL3]
          Length = 551

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L+A+     L+ V TKRMA+ LT++L  +N +   +H +    ER   +   +    D+L
Sbjct: 340 LSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADIL 399

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D   +         +  IGR  R  N+ V
Sbjct: 400 VATAVAARGLDIPNVTHVINYDLPSD-----IDDYVHRIGRTGRAGNTGV 444


>gi|306832490|ref|ZP_07465642.1| transcription-repair coupling factor [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304425390|gb|EFM28510.1| transcription-repair coupling factor [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 1170

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 58/305 (19%), Positives = 127/305 (41%), Gaps = 28/305 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G++GS +   +A   +A +   +V+   +    +L S+  +    + V  F  + D
Sbjct: 30  QLIMGLSGSSRALAIASAYQANEEKIVVITSTQNEVEKLASDLSSLIGEDKVYTF--FAD 87

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                 ++  +   ++K  S  E ++ ++ +    +L      + S V     + + E Y
Sbjct: 88  DVAAAEFIFAS---MDKAHSRLEALNFLQDNKQSGIL------ITSLVGARVLLPNPEIY 138

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           ++  +   +G+     +++  L    Y++    +  G F   GD ++I+     D  +R+
Sbjct: 139 AESQLNFVVGEDYNLDKVVKVLSNVGYQKVSQVLNPGEFSRRGDIVDIY-EMTADYPYRL 197

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             FG++++ I +F   T + + N+E + I      +        A K  +          
Sbjct: 198 EFFGDEVDGIRQFDAETQKSLSNIEQVTISPADELILSEEDFARASKAFE---------- 247

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
                 LE  + EQ+  Y  E+   T      ++  R+L+     E   TL +YIP+ + 
Sbjct: 248 ----TFLETAKDEQQQAYLSELYAATQEQYKHQDIRRFLSLFYAKE--WTLLDYIPKGTP 301

Query: 471 LFVDE 475
           +F D+
Sbjct: 302 VFFDD 306


>gi|116628255|ref|YP_820874.1| superfamily II DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116101532|gb|ABJ66678.1| Superfamily II DNA and RNA helicase [Streptococcus thermophilus
           LMD-9]
          Length = 527

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ IIRD + G+ D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGSRAEGIHGDLDQNKRLRIIRDFKNGQIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|323346404|gb|EGA80692.1| Ded1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 608

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A+  GL  L+ V TKRMA+ LT++L  +N R   +H +    ER   +   R G   +LV
Sbjct: 400 ASTDGL-TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLV 458

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              +   GLDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 459 ATAVAARGLDIPNVTHVINYDLPSD-----VDDYVHRIGRTGRAGNTGL 502


>gi|323302935|gb|EGA56739.1| Ded1p [Saccharomyces cerevisiae FostersB]
          Length = 604

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A+  GL  L+ V TKRMA+ LT++L  +N R   +H +    ER   +   R G   +LV
Sbjct: 396 ASTDGL-TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLV 454

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              +   GLDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 455 ATAVAARGLDIPNVTHVINYDLPSD-----VDDYVHRIGRTGRAGNTGL 498


>gi|321476533|gb|EFX87493.1| hypothetical protein DAPPUDRAFT_306483 [Daphnia pulex]
          Length = 805

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 2/95 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V  K  AE+L+  L  R + V  +H ++  ++R ++I   +  + D+LV  ++   
Sbjct: 547 VLIFVTKKANAEELSASLKSRELSVALLHGDMDQVDRNQVISSFKKKEMDILVATDVAAR 606

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           GLDIP    V   D  ++  + + T  I   GRA 
Sbjct: 607 GLDIPHIRTVVNYDIARD--IDTHTHRIGRTGRAG 639


>gi|295698371|ref|YP_003603026.1| ATP-dependent DNA helicase RecG [Candidatus Riesia pediculicola
           USDA]
 gi|291157197|gb|ADD79642.1| ATP-dependent DNA helicase RecG [Candidatus Riesia pediculicola
           USDA]
          Length = 187

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 55/99 (55%), Gaps = 7/99 (7%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           I++  +H +++  ++ +II D R  +  +L+   ++  GLDIP+  L+ I + ++ G   
Sbjct: 18  IKIGSIHGKMRAEDKRKIISDFRRNQIQILISTTIVEVGLDIPDANLMVIENPERLGL-- 75

Query: 667 SKTSLIQTIGRAARNVNSK---VILYADTITKSIQLAID 702
             + L Q  GR  RN N +   ++LY+ +I K+ +  ++
Sbjct: 76  --SQLHQLRGRVGRNSNQESFCILLYSSSINKAARFRLN 112


>gi|288904230|ref|YP_003429451.1| transcription repair coupling factor [Streptococcus gallolyticus
           UCN34]
 gi|325977207|ref|YP_004286923.1| transcription-repair coupling factor [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288730955|emb|CBI12499.1| Transcription repair coupling factor [Streptococcus gallolyticus
           UCN34]
 gi|325177135|emb|CBZ47179.1| transcription-repair coupling factor [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 1166

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 58/305 (19%), Positives = 127/305 (41%), Gaps = 28/305 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G++GS +   +A   +A +   +V+   +    +L S+  +    + V  F  + D
Sbjct: 26  QLIMGLSGSSRALAIASAYQANEEKIVVITSTQNEVEKLASDLSSLIGEDKVYTF--FAD 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                 ++  +   ++K  S  E ++ ++ +    +L      + S V     + + E Y
Sbjct: 84  DVAAAEFIFAS---MDKAHSRLEALNFLQDNKQSGIL------ITSLVGARVLLPNPEIY 134

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           ++  +   +G+     +++  L    Y++    +  G F   GD ++I+     D  +R+
Sbjct: 135 AESQLNFVVGEDYNLDKVVKVLSNVGYQKVSQVLNPGEFSRRGDIVDIY-EMTADYPYRL 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             FG++++ I +F   T + + N+E + I      +        A K  +          
Sbjct: 194 EFFGDEVDGIRQFDAETQKSLSNIEQVTISPADELILSEEDFARASKAFE---------- 243

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
                 LE  + EQ+  Y  E+   T      ++  R+L+     E   TL +YIP+ + 
Sbjct: 244 ----TFLETAKDEQQQAYLSELYAATQEQYKHQDIRRFLSLFYAKE--WTLLDYIPKGTP 297

Query: 471 LFVDE 475
           +F D+
Sbjct: 298 VFFDD 302


>gi|219123462|ref|XP_002182043.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406644|gb|EEC46583.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1565

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 13/112 (11%)

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           ++ +E+ + IR+ R   F+VLV   +  EGLDI E  L+   D      LRS   +IQ  
Sbjct: 692 MRQVEQQQAIREFREDTFNVLVCTCIGEEGLDIGEVDLIVNFDT-----LRSPIRMIQRT 746

Query: 676 GRAARNVNSKVI-LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           GR  R  + +V+ L A+   +   LA    +R+ E+ L H  K   NP+S +
Sbjct: 747 GRTGRKRDGRVVCLVAEGPEERTLLA----SRQSERNLAHALK---NPKSFR 791


>gi|169838125|ref|ZP_02871313.1| excinuclease ABC subunit B [candidate division TM7 single-cell
           isolate TM7a]
          Length = 41

 Score = 47.4 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/30 (66%), Positives = 24/30 (80%)

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           GD  RK  L E+GFRLPS +DNRPL+FEE+
Sbjct: 1   GDRARKEVLVEHGFRLPSALDNRPLKFEEF 30


>gi|323307275|gb|EGA60555.1| Ded1p [Saccharomyces cerevisiae FostersO]
          Length = 605

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A+  GL  L+ V TKRMA+ LT++L  +N R   +H +    ER   +   R G   +LV
Sbjct: 397 ASTDGL-TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLV 455

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              +   GLDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 456 ATAVAARGLDIPNVTHVINYDLPSD-----VDDYVHRIGRTGRAGNTGL 499


>gi|302685145|ref|XP_003032253.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8]
 gi|300105946|gb|EFI97350.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8]
          Length = 488

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V TKR+A+D+T YL +       +H + +  ER  ++ + + G+  +L+  ++  
Sbjct: 309 KVLIFVGTKRVADDITRYLRQDGWPALAIHGDKEQRERDWVLGEFKAGRSPILIATDVAS 368

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ + G V   D     F  +    I  IGR  R
Sbjct: 369 RGLDVKDIGYVINYD-----FPNNCEDYIHRIGRTGR 400


>gi|160380641|sp|A6ZP47|DED1_YEAS7 RecName: Full=ATP-dependent RNA helicase DED1
 gi|151945294|gb|EDN63537.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|190407515|gb|EDV10782.1| hypothetical protein SCRG_01592 [Saccharomyces cerevisiae RM11-1a]
 gi|207341041|gb|EDZ69208.1| YOR204Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256269590|gb|EEU04872.1| Ded1p [Saccharomyces cerevisiae JAY291]
 gi|323335425|gb|EGA76711.1| Ded1p [Saccharomyces cerevisiae Vin13]
 gi|323352139|gb|EGA84676.1| Ded1p [Saccharomyces cerevisiae VL3]
          Length = 604

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A+  GL  L+ V TKRMA+ LT++L  +N R   +H +    ER   +   R G   +LV
Sbjct: 396 ASTDGL-TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLV 454

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              +   GLDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 455 ATAVAARGLDIPNVTHVINYDLPSD-----VDDYVHRIGRTGRAGNTGL 498


>gi|74142317|dbj|BAE31920.1| unnamed protein product [Mus musculus]
          Length = 444

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           SEVK +   E+ E+I   R G+ ++L+   +  EGLDI EC +V      + G + ++ +
Sbjct: 180 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 234

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           ++Q  GR AR   S  +L   + +   +  I    R +      N+  N+ P+    KI+
Sbjct: 235 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 293

Query: 731 EVIDPILLEDAATTNISIDAQ 751
           E+    +LE       SI  Q
Sbjct: 294 ELQVQSILEKKMKVKRSIAKQ 314


>gi|162147670|ref|YP_001602131.1| transcription-repair coupling factor [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786247|emb|CAP55829.1| putatve transcription-repair coupling factor [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 1131

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 7/143 (4%)

Query: 231 YYQPEAYV---PRTDTYIEKESSINEQIDRMRHSATRSLLERNDC--IVVSSVS-CIYGI 284
           +  P A +   P  D       S N  I   R +    LLE      IV+++V   +  +
Sbjct: 31  FVAPNAEILRFPSWDCLPYDRVSPNPAIVAERVATLTRLLEPATAPRIVLTTVGGLVQRV 90

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
               ++    + L  GDS++Q  L+  LV   Y R D  +  G F   G   +IFPS  E
Sbjct: 91  APRAAFRGQSLTLAAGDSLDQALLIDLLVAAGYNRTDTVMEPGEFATRGGIFDIFPSG-E 149

Query: 345 DVAWRVSMFGNDIEEISEFYPLT 367
               R+ +FG+++E I  F P T
Sbjct: 150 AEPVRLDLFGDEVENIRRFDPAT 172


>gi|57640863|ref|YP_183341.1| DNA/RNA repair helicase [Thermococcus kodakarensis KOD1]
 gi|57159187|dbj|BAD85117.1| predicted DNA/RNA repair helicase [Thermococcus kodakarensis KOD1]
          Length = 461

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 34/185 (18%)

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------- 568
           W  +R   I + A  G    E    +  E +IR   L  P  EI +  +++         
Sbjct: 232 WRRVRGEEIKIEAVVGPIIYE----VRAEDLIREGFLAKPKFEIITYESKMPSFSERYKE 287

Query: 569 --EDVY---DEINLA--------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
             ED+    DE N A        A++G R+L+ V      + L E L +  I+  ++ S+
Sbjct: 288 LYEDMIMNNDERNRAIVKKAIELARKGHRVLIDVRRIEHGKILKEMLEKEGIKAEFLSSQ 347

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             +  R EI+   + G+  VL+   LL+EG+DIPE   + +    K     S    IQTI
Sbjct: 348 --SPNRWEILEAFKSGEIPVLIS-TLLKEGVDIPEISAIILAGGGK-----SDIMTIQTI 399

Query: 676 GRAAR 680
           GRA R
Sbjct: 400 GRALR 404


>gi|317488238|ref|ZP_07946807.1| transcription-repair coupling factor [Eggerthella sp. 1_3_56FAA]
 gi|316912680|gb|EFV34220.1| transcription-repair coupling factor [Eggerthella sp. 1_3_56FAA]
          Length = 1022

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           GTF V G +I++FP +L     R+  FG+++EEI    P TGQ I+ +  + IY
Sbjct: 45  GTFAVRGGTIDVFPGNLV-YPVRLDFFGDELEEIRRIVPTTGQTIQALPDVSIY 97


>gi|297571406|ref|YP_003697180.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931753|gb|ADH92561.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 620

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 2/104 (1%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           LA  +    L+ V T+  AEDL   L  R ++   +  +V   +R +++  LR G  DVL
Sbjct: 239 LATTEADAALVFVRTRATAEDLAIELSTRGVQAAALSGDVAQKDREKLVDRLRQGSIDVL 298

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLD+   GLV   D  +E  + +    I   GRA R
Sbjct: 299 VATDVAARGLDVERIGLVVNFDIPRE--VETYVHRIGRTGRAGR 340


>gi|257096038|ref|NP_001157949.1| interferon-induced helicase C domain-containing protein 1 isoform 2
           [Mus musculus]
          Length = 976

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           SEVK +   E+ E+I   R G+ ++L+   +  EGLDI EC +V      + G + ++ +
Sbjct: 712 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 766

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           ++Q  GR AR   S  +L   + +   +  I    R +      N+  N+ P+    KI+
Sbjct: 767 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 825

Query: 731 EVIDPILLEDAATTNISIDAQ 751
           E+    +LE       SI  Q
Sbjct: 826 ELQVQSILEKKMKVKRSIAKQ 846


>gi|194903791|ref|XP_001980939.1| GG17436 [Drosophila erecta]
 gi|190652642|gb|EDV49897.1| GG17436 [Drosophila erecta]
          Length = 793

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R  R G   +LV   +   G
Sbjct: 558 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 617

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 618 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 661


>gi|74197309|dbj|BAC34178.2| unnamed protein product [Mus musculus]
 gi|74217148|dbj|BAC39257.2| unnamed protein product [Mus musculus]
          Length = 1393

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 15/115 (13%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM----HSEVKTL------ERIEIIRDLRLGKF 633
           R+++    +   E++ E L +    +R M    H+  K        E+++++R  R G +
Sbjct: 463 RVMIFSSFRDSVEEIAEMLLQHRPVIRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDGGY 522

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + LV   +  EGLDI E  L+   DA K     S   LIQ +GR  R    ++++
Sbjct: 523 NTLVSTCVGEEGLDIGEVDLIICFDAQK-----SPIRLIQRMGRTGRKRQGRIVV 572


>gi|298704856|emb|CBJ28373.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 519

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V TK+  + LT  L +   + R +H +    ER  +++D + G F VLV  ++  
Sbjct: 373 KVLVFVETKKGCDALTRSLRQDGYQARCIHGDKTQEERDYVLKDFKGGNFQVLVATDVAA 432

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +  +V   D     F  +    I  IGR  R
Sbjct: 433 RGLDVKDIQMVINFD-----FPNNMEDYIHRIGRCGR 464


>gi|260947802|ref|XP_002618198.1| hypothetical protein CLUG_01657 [Clavispora lusitaniae ATCC 42720]
 gi|238848070|gb|EEQ37534.1| hypothetical protein CLUG_01657 [Clavispora lusitaniae ATCC 42720]
          Length = 692

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           AA  GL I+ T  TKRMA+ L ++LY++      +H      ER + +   + G   +LV
Sbjct: 478 AADNGLTIVFTE-TKRMADYLADFLYDQGFPATAIHGNRTQYEREKALAAFKNGTAPILV 536

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              +   GLDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 537 ATAVAARGLDIPNVSHVINYDLPSD-----IDDYVHRIGRTGRAGNTGI 580


>gi|120610252|ref|YP_969930.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588716|gb|ABM32156.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 446

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+ V T+  AE + E LY+  I     H  +    R +++++ R  ++ VLV  +L  
Sbjct: 254 RVLVFVATQYAAEHVAEKLYQSGIYASPFHGGLSQGTRRQVLQEFRDERWQVLVTTDLAA 313

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
            G+DI   GL A+++ D     R+    +  IGR  R   S V
Sbjct: 314 RGIDI--AGLPAVVNYD---LPRAAADYVHRIGRTGRAGASGV 351


>gi|82915217|ref|XP_729012.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485792|gb|EAA20577.1| RNA helicase-1 [Plasmodium yoelii yoelii]
          Length = 654

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 11/120 (9%)

Query: 567 QVEDVYDEINLA------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +VE V +E  L+       + G  +L+    K+  +D+ EYL  + +    +H  +   E
Sbjct: 435 EVEYVKEEFKLSYLLQVLQKTGPPVLIFCENKKDVDDVHEYLLLKGVNAIAIHGSLGQTE 494

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E I   R G+ DVLVG ++  +GLD P    V   D  K+       + +  IGR  R
Sbjct: 495 RLEAINLFRNGEKDVLVGTDVASKGLDFPSIEHVINYDMPKD-----IENYVHRIGRTGR 549


>gi|322388803|ref|ZP_08062400.1| DNA helicase RecG [Streptococcus infantis ATCC 700779]
 gi|321140422|gb|EFX35930.1| DNA helicase RecG [Streptococcus infantis ATCC 700779]
          Length = 671

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +    +V  +H ++K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTTH-FAGKAKVALLHGKMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|315656585|ref|ZP_07909472.1| DNA helicase RecG [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492540|gb|EFU82144.1| DNA helicase RecG [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 816

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RIL TV T+  A   T  ++ R+I +   HS + +  + + + D   G+  +LV   ++ 
Sbjct: 596 RILHTV-TQTAARLATLPIF-RDIPIGVAHSNLDSAAKQQAVSDFAAGRTPLLVSTTVVE 653

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+D+PE  ++ ILDAD+ G     + L Q  GR  R     V L
Sbjct: 654 VGMDVPEASMMIILDADRYGI----SQLHQLRGRIGRGSRPGVCL 694


>gi|258507889|ref|YP_003170640.1| ComF operon protein 1 [Lactobacillus rhamnosus GG]
 gi|257147816|emb|CAR86789.1| ComF operon protein 1 [Lactobacillus rhamnosus GG]
 gi|259649216|dbj|BAI41378.1| DNA/RNA helicase [Lactobacillus rhamnosus GG]
          Length = 421

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           LL V     AE L   L  R I ++         +R E +   R G+ +VLV   +L  G
Sbjct: 299 LLFVPKISWAEQLAGKL--RQIGLKAAGVASTDAQRAEKVTAFRQGQLEVLVTTTILERG 356

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS---KVILYADTITKSI 697
           + +P C +  +  AD E    S ++LIQ  GRA R  +S    V+ ++D  T ++
Sbjct: 357 VTVPRCAVAVLAAADPEF---SASALIQIAGRAGRAADSPDDPVVFFSDRYTLAM 408


>gi|19528473|gb|AAL90351.1| RE28061p [Drosophila melanogaster]
          Length = 798

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R  R G   +LV   +   G
Sbjct: 563 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 622

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 623 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 666


>gi|269104240|ref|ZP_06156936.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268160880|gb|EEZ39377.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 431

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V  K   + L E L++R I     H +     R  II D + GK +VL+  ++   G
Sbjct: 260 LVFVAAKNSCKHLAEKLHKRGIEAEVFHGDKAQSSRTRIIEDFKSGKIEVLIATDIAARG 319

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDI +  +V  +D       RS +  +  IGR+ R
Sbjct: 320 LDIEKLPVVINVD-----LPRSPSDYMHRIGRSGR 349


>gi|321250272|ref|XP_003191751.1| ATP-dependent RNA helicase ded1 [Cryptococcus gattii WM276]
 gi|317458218|gb|ADV19964.1| ATP-dependent RNA helicase ded1, putative [Cryptococcus gattii
           WM276]
          Length = 644

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A Q G  IL+ V TKRMA+ L ++L  R      +H +    ER   +   + G+  +LV
Sbjct: 418 AEQSGGLILVFVETKRMADTLCDFLCSRRHNATSIHGDRTQREREAALYAFKSGRAPILV 477

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
              +   GLDIP    V + D   +  +   T  I   GRA  NV +    +
Sbjct: 478 ATAVAARGLDIPNVTHVILYDLPND--VAEYTHRIGRTGRAG-NVGTSTAFF 526


>gi|197105082|ref|YP_002130459.1| transcription-repair coupling factor [Phenylobacterium zucineum
           HLK1]
 gi|196478502|gb|ACG78030.1| transcription-repair coupling factor [Phenylobacterium zucineum
           HLK1]
          Length = 1162

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 2/116 (1%)

Query: 265 SLLERNDCIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
            L E+   ++V+SV S +  +  V++  +     K+G+SVE  +L        Y R    
Sbjct: 109 GLDEKKPALLVTSVPSLLQRVPPVKAVKRASYSAKVGNSVEIADLERYFAVNGYARASTV 168

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             RG F + G  I++FP   E+   R+ +FG+ +E I  F P T +  + ++ + +
Sbjct: 169 SDRGEFAIRGGVIDVFPPTAEEPV-RLDLFGDTLESIRAFDPETQRSTKQLKEVSL 223


>gi|160331247|ref|XP_001712331.1| eif4A [Hemiselmis andersenii]
 gi|159765778|gb|ABW98006.1| eif4A [Hemiselmis andersenii]
          Length = 401

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y  I   A+Q +   + V  ++  E L   +   +  + ++H E++  ER E +++ R
Sbjct: 255 DIYRSIK--AEQSI---IYVNARKKVEWLANKMKLNDFSIAFIHGEMEQSERSETMKNFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GKF VL+  +LL  G+DI +   V   D       + K S I  IGR+ R
Sbjct: 310 FGKFRVLITTDLLSRGIDIEKVNFVINYDLP-----QYKESYIHRIGRSGR 355


>gi|149186684|ref|ZP_01864995.1| transcription-repair coupling factor [Erythrobacter sp. SD-21]
 gi|148829592|gb|EDL48032.1| transcription-repair coupling factor [Erythrobacter sp. SD-21]
          Length = 1163

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 25/216 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           ++++LK  H     Q+  G     +   MA +  A    A+ +AP+   A +  SE   F
Sbjct: 4   LSRILKADHPLTLAQVARGA----QPLVMADLARAGTGRAVFIAPDDA-AMRSVSEAAQF 58

Query: 217 F-PHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           F P   V  F ++    YD   P   V       ++ SS+     R++    ++ L    
Sbjct: 59  FAPELDVIEFPAWDSLPYDRASPALTVS-----AKRLSSLF----RLQTGKAKAQL---- 105

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            IV ++ + +  + +     + + + K G  + +  L   L KQ Y R D  I +G + +
Sbjct: 106 -IVTTANAVLQRVLTPFRIRESVREFKPGTEIGRDSLSLLLQKQGYSRTDTVIDKGEYAI 164

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
            G  +++FPS L D A R+  FG+++E +  F P T
Sbjct: 165 RGSIVDVFPSGL-DEALRLDFFGDELESLRSFDPNT 199



 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 15/163 (9%)

Query: 557 PPVEIRSARTQVEDVYDEINLAA-----QQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           PPV+  + RT V +  D +   A      +G +  + V      E ++++L+E    V++
Sbjct: 785 PPVDRLAVRTYVMEWDDMVMREALLREHHRGGQSFIVVPRISDMEAISDWLHENVPEVKF 844

Query: 612 M--HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           +  H ++   E  E +     GK+DVL+   ++  GLD+P    + I  AD  G      
Sbjct: 845 VAAHGQMGAGEIEERMSAFYEGKYDVLLATTIVESGLDLPSANTIIIHRADIFGL----A 900

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
            L Q  GR  R   SK+  YA  +T    +A+ E   +R K L
Sbjct: 901 QLYQLRGRVGR---SKLRAYA-YLTYEKDVALSEVAEKRLKVL 939


>gi|307702062|ref|ZP_07639069.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
 gi|307616549|gb|EFN95739.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
          Length = 521

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|259149685|emb|CAY86489.1| Ded1p [Saccharomyces cerevisiae EC1118]
          Length = 604

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A+  GL  L+ V TKRMA+ LT++L  +N R   +H +    ER   +   R G   +LV
Sbjct: 396 ASTDGL-TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLV 454

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              +   GLDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 455 ATAVAARGLDIPNVTHVINYDLPSD-----VDDYVHRIGRTGRAGNTGL 498


>gi|51329784|gb|AAH80200.1| Ifih1 protein [Mus musculus]
          Length = 976

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           SEVK +   E+ E+I   R G+ ++L+   +  EGLDI EC +V      + G + ++ +
Sbjct: 712 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 766

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           ++Q  GR AR   S  +L   + +   +  I    R +      N+  N+ P+    KI+
Sbjct: 767 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 825

Query: 731 EVIDPILLEDAATTNISIDAQ 751
           E+    +LE       SI  Q
Sbjct: 826 ELQVQSILEKKMKVKRSIAKQ 846


>gi|113931550|ref|NP_001039224.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Xenopus (Silurana)
           tropicalis]
 gi|89272468|emb|CAJ82454.1| novel GUCT (NUC152) domain containing DEAD/DEAH box helicase
           [Xenopus (Silurana) tropicalis]
          Length = 755

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +H +++  ER  I++  R G F+VLV  N+   GLDIPE  LV +  A KE       + 
Sbjct: 461 LHGDLQQKEREVILKGFRQGSFEVLVATNVAARGLDIPEVDLVVLYSAPKEA-----DAY 515

Query: 672 IQTIGRAAR 680
           +   GR  R
Sbjct: 516 VHRSGRTGR 524


>gi|306825666|ref|ZP_07459005.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432027|gb|EFM35004.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 518

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|163916596|gb|AAI57756.1| LOC734085 protein [Xenopus (Silurana) tropicalis]
          Length = 758

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +H +++  ER  I++  R G F+VLV  N+   GLDIPE  LV +  A KE       + 
Sbjct: 461 LHGDLQQKEREVILKGFRQGSFEVLVATNVAARGLDIPEVDLVVLYSAPKEA-----DAY 515

Query: 672 IQTIGRAAR 680
           +   GR  R
Sbjct: 516 VHRSGRTGR 524


>gi|157106194|ref|XP_001649211.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108879905|gb|EAT44130.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 625

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 559 VEIRSARTQVEDVYDEI---NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           V+    R+ + D+   I   N   ++    L+ V TK+ A+ L E+LY  N  V  +H +
Sbjct: 401 VDENDKRSHLLDLLSNIKAQNEGDEKDCLTLIFVETKKSADSLEEFLYHYNHPVTSIHGD 460

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSL 671
               ER + ++  R G+  VLV   +   GLDIP    V   D  A+ E ++    +T  
Sbjct: 461 RTQKEREDALKCFRSGRCPVLVATAVAARGLDIPNVKHVINFDLPAEIEEYVHRIGRTGR 520

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQ 698
           +  +G A    N K    A+ + + +Q
Sbjct: 521 MGNLGIATSFFNDKNRNVANGLVRLLQ 547


>gi|73963567|ref|XP_537429.2| PREDICTED: similar to CG7922-PA [Canis familiaris]
          Length = 2047

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 15/115 (13%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM----HSEVKTL------ERIEIIRDLRLGKF 633
           R+++    +   +++ E L +    +R M    H+  K++      E++E+++  R G +
Sbjct: 478 RVMIFSSFRDSVQEIAEMLLQHQPVIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGY 537

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + LV   +  EGLDI E  L+   DA K     S   L+Q +GR  R    ++++
Sbjct: 538 NTLVSTCVGEEGLDIGEVDLIICFDAQK-----SPIRLVQRMGRTGRKRKGRIVV 587


>gi|291565766|dbj|BAI88038.1| primosomal protein N' [Arthrospira platensis NIES-39]
          Length = 831

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 16/145 (11%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+R+A++LT    E R IR     +  K   RI ++      + D+LVG  +L +GLD+ 
Sbjct: 594 TQRVAQELTRLFPELRFIRFDSDTTRTKNAHRI-LLTQFANREADLLVGTQMLTKGLDLD 652

Query: 650 ECGLVAILDADKEGFL---------RSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQL 699
             GLV I+ AD  G L         R+  +L+Q  GRA R N   +VIL   T    +  
Sbjct: 653 SVGLVGIVSAD--GLLHLSDYRANERAFQTLLQVAGRAGRGNDPGQVILQTYTPEHPVVE 710

Query: 700 AIDETTRRR--EKQLEHNKKHNINP 722
           A+         E +L+H  + N  P
Sbjct: 711 AVRNHAYDSFVETELQHRSELNYPP 735


>gi|132252411|gb|ABO33314.1| melanoma differentiation-associated protein 5 [Mus musculus]
 gi|158699346|gb|ABW76702.1| melanoma differentiation-associated protein 5 [Mus musculus]
          Length = 1025

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           SEVK +   E+ E+I   R G+ ++L+   +  EGLDI EC +V      + G + ++ +
Sbjct: 761 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 815

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           ++Q  GR AR   S  +L   + +   +  I    R +      N+  N+ P+    KI+
Sbjct: 816 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 874

Query: 731 EVIDPILLEDAATTNISIDAQ 751
           E+    +LE       SI  Q
Sbjct: 875 ELQVQSILEKKMKVKRSIAKQ 895


>gi|70948515|ref|XP_743756.1| RNA helicase-1 [Plasmodium chabaudi chabaudi]
 gi|56523410|emb|CAH76963.1| RNA helicase-1, putative [Plasmodium chabaudi chabaudi]
          Length = 633

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 11/120 (9%)

Query: 567 QVEDVYDEINLA------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +VE V +E  L+       + G  +L+    K+  +D+ EYL  + +    +H  +   E
Sbjct: 414 EVEYVKEEFKLSYLLQVLQKTGPPVLIFCENKKDVDDVHEYLLLKGVNAIAIHGSLGQTE 473

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E I   R G+ DVLVG ++  +GLD P    V   D  K+       + +  IGR  R
Sbjct: 474 RLEAINLFRNGEKDVLVGTDVASKGLDFPSIEHVINYDMPKD-----IENYVHRIGRTGR 528


>gi|117928787|ref|YP_873338.1| ATP-dependent DNA helicase RecG [Acidothermus cellulolyticus 11B]
 gi|117649250|gb|ABK53352.1| ATP-dependent DNA helicase RecG [Acidothermus cellulolyticus 11B]
          Length = 741

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           R +R+  +H  +    +  ++ D   G+ DVLV   ++  G+D+P   ++ ILDAD+ G 
Sbjct: 557 RGLRIGTLHGRMDAAAKDAVLADFSAGRLDVLVATTVVEVGVDVPNASMMVILDADRFGV 616

Query: 665 LRSKTSLIQTIGRAARNVNSKVIL 688
               + L Q  GR  R     V L
Sbjct: 617 ----SQLHQLRGRIGRAGQRAVCL 636


>gi|110760457|ref|XP_391829.3| PREDICTED: putative ATP-dependent RNA helicase Pl10 [Apis
           mellifera]
          Length = 701

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 4/106 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L EYL++    V  +H +    ER + +R  R GK  +LV   +   G
Sbjct: 488 LVFVETKKGADMLEEYLHQMGYPVTSIHGDRTQREREDALRRFRAGKAPILVATAVAARG 547

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVI 687
           LDIP    V   D   D E ++    +T  +  +G A    N+K I
Sbjct: 548 LDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNLGLATSFFNNKNI 593


>gi|260892053|ref|YP_003238150.1| ATP-dependent DNA helicase RecG [Ammonifex degensii KC4]
 gi|260864194|gb|ACX51300.1| ATP-dependent DNA helicase RecG [Ammonifex degensii KC4]
          Length = 685

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 7/118 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           ++AE+L ++  E   ++  +H  +K  E+  ++   R G+  +LV  +++  G+D+P   
Sbjct: 493 KLAEELKKFFPE--FQIGLLHGRLKLEEKERVMAAFRSGEIKLLVTTSVVEVGVDVPNAT 550

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRRE 709
           ++ I DAD+ G       L Q  GR  R +  S  IL AD +T   Q  +   T  R+
Sbjct: 551 VMVIYDADRFGL----AQLHQLRGRVGRSDKPSYCILVADKVTPEAQARLKAFTNLRD 604


>gi|227524866|ref|ZP_03954915.1| possible ATP-dependent DNA helicase/translocase [Lactobacillus
           hilgardii ATCC 8290]
 gi|227087972|gb|EEI23284.1| possible ATP-dependent DNA helicase/translocase [Lactobacillus
           hilgardii ATCC 8290]
          Length = 142

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 8/128 (6%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           IN   +Q  R LL V   +    ++  L + NI   Y+       +R+E +  +R    D
Sbjct: 2   INRLVKQKQRFLLFVPRIKDLTLVSNALEKANINCTYLTVYSADPQRLEKVTAMRSQSVD 61

Query: 635 VLVGINLLREGLDIPECGL-VAILDADKEGFLRSKTSLIQTIGRAARNV---NSKVILYA 690
            L+   +L  G+  P  G+ V +L AD E F  S ++L+Q  GR  RN      +VILY 
Sbjct: 62  FLITTTILERGVTFP--GIDVMVLKADDEVF--STSALVQIAGRVGRNSARPTGQVILYC 117

Query: 691 DTITKSIQ 698
           +T +K+I+
Sbjct: 118 ETKSKTIK 125


>gi|195330652|ref|XP_002032017.1| GM26328 [Drosophila sechellia]
 gi|194120960|gb|EDW43003.1| GM26328 [Drosophila sechellia]
          Length = 797

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R  R G   +LV   +   G
Sbjct: 562 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 621

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 622 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 665


>gi|148704700|gb|EDL36647.1| mCG118968 [Mus musculus]
          Length = 1370

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 15/115 (13%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM----HSEVKTL------ERIEIIRDLRLGKF 633
           R+++    +   E++ E L +    +R M    H+  K        E+++++R  R G +
Sbjct: 431 RVMIFSSFRDSVEEIAEMLLQHRPVIRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDGGY 490

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + LV   +  EGLDI E  L+   DA K     S   LIQ +GR  R    ++++
Sbjct: 491 NTLVSTCVGEEGLDIGEVDLIICFDAQK-----SPIRLIQRMGRTGRKRQGRIVV 540


>gi|148695044|gb|EDL26991.1| interferon induced with helicase C domain 1 [Mus musculus]
          Length = 1025

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           SEVK +   E+ E+I   R G+ ++L+   +  EGLDI EC +V      + G + ++ +
Sbjct: 761 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 815

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           ++Q  GR AR   S  +L   + +   +  I    R +      N+  N+ P+    KI+
Sbjct: 816 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 874

Query: 731 EVIDPILLEDAATTNISIDAQ 751
           E+    +LE       SI  Q
Sbjct: 875 ELQVQSILEKKMKVKRSIAKQ 895


>gi|17985987|ref|NP_536783.1| belle [Drosophila melanogaster]
 gi|74947986|sp|Q9VHP0|DDX3_DROME RecName: Full=ATP-dependent RNA helicase bel; AltName: Full=Protein
           belle
 gi|7299061|gb|AAF54262.1| belle [Drosophila melanogaster]
          Length = 798

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R  R G   +LV   +   G
Sbjct: 563 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 622

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 623 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 666


>gi|70663484|emb|CAJ15141.1| PL10b protein [Platynereis dumerilii]
          Length = 816

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 5/119 (4%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D +N +    L  L+ V TK+ A+ L  +LY        +H +    ER E +R+ R 
Sbjct: 583 LLDLLNASGPDSL-TLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKEREEALRNFRS 641

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           GK  VLV   +   GLDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 642 GKTPVLVATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDK 700


>gi|332285001|ref|YP_004416912.1| transcription-repair coupling factor [Pusillimonas sp. T7-7]
 gi|330428954|gb|AEC20288.1| transcription-repair coupling factor [Pusillimonas sp. T7-7]
          Length = 1158

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 88/212 (41%), Gaps = 21/212 (9%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQ 233
           GSG  + +A +  A ++  +V+  + + A +L  E   F P   V     +    YD + 
Sbjct: 38  GSGDAWWLADLARASRKTVVVLCADPLAAQRLADEVLLFAPDLRVRQLPDWETLPYDGFS 97

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
           P             +  I+E++ R  H+  +   E+ D + V   + +Y +   E  +  
Sbjct: 98  PH------------QDLISERL-RTLHALMQ---EQVDVLTVPITTALYRLAPPEFLAAY 141

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
               + GD +++  L   L +  Y         G F + G  I++FP     + +R+ +F
Sbjct: 142 TFAFRQGDKLDEDGLRKQLTRANYSHVTQVTAPGEFCIRGGLIDLFPMG-SALPYRLDLF 200

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
            ++IE I  F   T + +  V+ +++     +
Sbjct: 201 DDEIESIRSFDIDTQRSLYPVKDVQLLPGREF 232


>gi|68488833|ref|XP_711763.1| hypothetical protein CaO19.10315 [Candida albicans SC5314]
 gi|68488878|ref|XP_711739.1| hypothetical protein CaO19.2797 [Candida albicans SC5314]
 gi|46433061|gb|EAK92517.1| hypothetical protein CaO19.2797 [Candida albicans SC5314]
 gi|46433086|gb|EAK92541.1| hypothetical protein CaO19.10315 [Candida albicans SC5314]
          Length = 623

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+  +      ++   L ++ +  RY+ SE    ER  I+ D + GKF VL  + +  EG
Sbjct: 278 LIFCINVEHCREVCALLQKQGVDARYVISETSNSERKTIVADFKQGKFPVLCNVTVFTEG 337

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            DIP    + +    K     SK  +IQ IGR  R
Sbjct: 338 TDIPNIDSIILARPTK-----SKPLMIQMIGRGLR 367


>gi|269956525|ref|YP_003326314.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305206|gb|ACZ30756.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 712

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+  AE++   L E+ I    +  +V   ER +I+  LR G  DVLV  ++   GLD+  
Sbjct: 300 TRSAAEEVGAALIEKGISAATISGDVAQKEREKIVERLRSGALDVLVATDVAARGLDVDR 359

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLV   D  +E       + +  IGR  R
Sbjct: 360 IGLVVNFDIPRE-----AEAYVHRIGRTGR 384


>gi|224539911|ref|ZP_03680450.1| hypothetical protein BACCELL_04822 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518465|gb|EEF87570.1| hypothetical protein BACCELL_04822 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 435

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 9/114 (7%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            A Q   R+++   +K   +++T+ L    + V  MHS+++  +R E++ + + G+ ++L
Sbjct: 239 FAEQTPERVIIFASSKLKVKEVTKALKMMKLNVGEMHSDLEQAQREEVMHEFKAGRINIL 298

Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  +++  G+DI +  LV   D   D E +       +  IGR AR  N  V L
Sbjct: 299 VATDIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAL 345


>gi|324517616|gb|ADY46875.1| Eukaryotic initiation factor 4A-III [Ascaris suum]
          Length = 405

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + L E L E N  V  MH +++  ER  I+++ R
Sbjct: 264 DLYDTLTIT-----QAVIFCNTRRKVDWLAEKLKEANFTVSAMHGDMEQKERDAIVKEFR 318

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   +L+  ++   GLDIP+  LV   D        ++   I  IGR+ R
Sbjct: 319 SGTSRLLISTDVFARGLDIPQVSLVVNYD-----LPNNRELYIHRIGRSGR 364


>gi|297616314|ref|YP_003701473.1| transcription-repair coupling factor [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144151|gb|ADI00908.1| transcription-repair coupling factor [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 1081

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 40/212 (18%), Positives = 94/212 (44%), Gaps = 19/212 (8%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           ++ G+ GS ++F +  +    +   + + P +  A  L+ E + F   +AV  +      
Sbjct: 24  MISGLAGSARSFFLYLLATRTEDTLVCLVPLEEQAYDLHRELRGFLGPDAVCLY------ 77

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL----ERNDCIVVSSVSCIYGIGSV 287
                  P  D     E   N    RM   +T S L    ++   ++ ++ S +  + S 
Sbjct: 78  -------PSQDLVFWHEGREN-SFSRMTRLSTLSRLASGHQQVKVLIATAGSLVTKVLSP 129

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           + + +  + L +   +  ++ +  LV+  Y+R  +    G+F + G  ++++P    +  
Sbjct: 130 QEFRRQTLTLAVKQEINLEKTMRRLVELGYQRCQVVTDPGSFGLRGGVLDVYPPDQTE-P 188

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           +R+ ++ ++IE I  F PLT +  + + ++ I
Sbjct: 189 FRLELWADEIESIRSFDPLTQRSGKKLTSVSI 220


>gi|254293942|ref|YP_003059965.1| transcription-repair coupling factor [Hirschia baltica ATCC 49814]
 gi|254042473|gb|ACT59268.1| transcription-repair coupling factor [Hirschia baltica ATCC 49814]
          Length = 1152

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 10/118 (8%)

Query: 598 LTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           L  +L E+   V ++  H ++ + +  +I+ D   GK DVL+   ++  GLDIP    + 
Sbjct: 830 LERFLREQVPEVSFLSAHGQMASGQLEDIMNDFYDGKADVLLATTIVESGLDIPRANTIV 889

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           I  ADK G       L Q  GR  R   SK+  YA   TK   + + ET  +R K L+
Sbjct: 890 IHRADKFGL----AQLYQLRGRVGR---SKLRAYAYMTTKK-DMVLSETAEKRLKVLQ 939



 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 28/177 (15%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSI 251
            + +A ++  A Q+ S  K F PH A+  F ++    YD   P A+              
Sbjct: 39  GVYVARDERQALQVLSIAKFFQPHMAMINFPAWDCLPYDRVSPTAH-------------- 84

Query: 252 NEQIDRMRHSATRSLLERND----CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
              I  MR SA   L  R+      +V ++ + +  +  V   ++      IG  V+Q+ 
Sbjct: 85  ---ISAMRCSALARLSHRDPKEKILVVTTAHALVQRVAPVTKMAEASFAAGIGADVDQQA 141

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEF 363
           L   L    Y R DI    G + + G  ++I+ P  +E V  R+  FG+++E I  F
Sbjct: 142 LQDYLTINGYTRTDIVREPGEYAIRGGIVDIYPPDRIEPV--RLDFFGDNLESIRSF 196


>gi|94268418|ref|ZP_01291170.1| Helicase-like:Type III restriction enzyme, res subunit:DEAD/DEAH
           box helicase-like [delta proteobacterium MLMS-1]
 gi|93451611|gb|EAT02408.1| Helicase-like:Type III restriction enzyme, res subunit:DEAD/DEAH
           box helicase-like [delta proteobacterium MLMS-1]
          Length = 998

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 8/115 (6%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E NL A +G+   +++   + A+ + E   +R I      S V + E   ++ DLR G+ 
Sbjct: 551 ESNLEAIKGVGFCVSI---KHAQYMAEMFNQRGIAAAAFVSGVDSAECSAMLADLRNGRL 607

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             L  ++ L EG+D+PE  +V  L   +     S T  +Q +GR  R+   K  L
Sbjct: 608 SFLFTVDKLSEGVDVPEMNVVLFLRPTE-----SLTVFLQQLGRGLRHAPGKDCL 657


>gi|302661784|ref|XP_003022555.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517]
 gi|291186507|gb|EFE41937.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517]
          Length = 1468

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DL+ GK ++LV  ++L EG+D+  C LV   D  K+  LR   S +Q  GRA +  + 
Sbjct: 495 IDDLKSGKKNLLVATSVLEEGIDVSACDLVVCFDPPKQ--LR---SFVQRRGRARKKSSK 549

Query: 685 KVILYA--DTITKSIQLAIDETTRRR 708
            VI YA  DT T     A+++  + R
Sbjct: 550 FVIFYAEDDTATYKDWEAMEDIMKER 575


>gi|187957728|gb|AAI50786.1| Fanconi anemia, complementation group M [Mus musculus]
          Length = 2021

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 15/115 (13%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM----HSEVKTL------ERIEIIRDLRLGKF 633
           R+++    +   E++ E L +    +R M    H+  K        E+++++R  R G +
Sbjct: 463 RVMIFSSFRDSVEEIAEMLLQHRPVIRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDGGY 522

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + LV   +  EGLDI E  L+   DA K     S   LIQ +GR  R    ++++
Sbjct: 523 NTLVSTCVGEEGLDIGEVDLIICFDAQK-----SPIRLIQRMGRTGRKRQGRIVV 572


>gi|121726001|ref|ZP_01679300.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V52]
 gi|121631483|gb|EAX63853.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V52]
          Length = 979

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           Q +  ++I    G  DP     +  TQ   E VY   +   Q   R L   ++K+ A+ +
Sbjct: 405 QAVNYQEIPWRNGKFDPDSLDNALATQRRAEHVYQHWHQKKQT--RTLAFCVSKKHADFM 462

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
            E+   + I+   ++S+ K + R + ++ L  GK D+L  ++L  EG D+P    + +L 
Sbjct: 463 AEFCLSKGIKAIAVYSDSK-VRRNQALQWLDSGKIDILFSVDLFNEGTDLPAIDTILMLR 521

Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680
             +     SK   +Q +GR  R
Sbjct: 522 PTE-----SKILFLQQLGRGLR 538


>gi|20385628|gb|AAM21359.1| melanoma differentiation associated gene 5-like protein [Mus
           musculus]
          Length = 1025

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           SEVK +   E+ E+I   R G+ ++L+   +  EGLDI EC +V      + G + ++ +
Sbjct: 761 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 815

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           ++Q  GR AR   S  +L   + +   +  I    R +      N+  N+ P+    KI+
Sbjct: 816 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 874

Query: 731 EVIDPILLEDAATTNISIDAQ 751
           E+    +LE       SI  Q
Sbjct: 875 ELQVQSILEKKMKVKRSIAKQ 895


>gi|54112418|ref|NP_849243.2| Fanconi anemia group M protein homolog [Mus musculus]
 gi|78099255|sp|Q8BGE5|FANCM_MOUSE RecName: Full=Fanconi anemia group M protein homolog; Short=Protein
           FACM; AltName: Full=ATP-dependent RNA helicase FANCM
          Length = 2021

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 15/115 (13%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM----HSEVKTL------ERIEIIRDLRLGKF 633
           R+++    +   E++ E L +    +R M    H+  K        E+++++R  R G +
Sbjct: 463 RVMIFSSFRDSVEEIAEMLLQHRPVIRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDGGY 522

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + LV   +  EGLDI E  L+   DA K     S   LIQ +GR  R    ++++
Sbjct: 523 NTLVSTCVGEEGLDIGEVDLIICFDAQK-----SPIRLIQRMGRTGRKRQGRIVV 572


>gi|147675167|ref|YP_001216293.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O395]
 gi|146317050|gb|ABQ21589.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           O395]
 gi|227012636|gb|ACP08846.1| helicase-related protein [Vibrio cholerae O395]
          Length = 979

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           Q +  ++I    G  DP     +  TQ   E VY   +   Q   R L   ++K+ A+ +
Sbjct: 405 QAVNYQEIPWRNGKFDPDSLDNALATQRRAEHVYQHWHQKKQT--RTLAFCVSKKHADFM 462

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
            E+   + I+   ++S+ K + R + ++ L  GK D+L  ++L  EG D+P    + +L 
Sbjct: 463 AEFCLSKGIKAIAVYSDSK-VRRNQALQWLDSGKIDILFSVDLFNEGTDLPAIDTILMLR 521

Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680
             +     SK   +Q +GR  R
Sbjct: 522 PTE-----SKILFLQQLGRGLR 538


>gi|162605920|ref|XP_001713475.1| eukaryotic initiation factor 4a [Guillardia theta]
 gi|6690142|gb|AAF24007.1|AF083031_4 eukaryotic initiation factor 4a [Guillardia theta]
          Length = 385

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 10/113 (8%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           V ++Y +I +        ++ V T+R  E L   + +    V Y+H E+  ++R  +++D
Sbjct: 242 VIEIYSKIKITQS-----IIYVNTRRKTEWLANIMKKYGFDVGYLHGEMLQIDRSSVMKD 296

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            R G F +L+  +L+  G+DI +  LV   D  K      K   I  IGR+ R
Sbjct: 297 FRSGLFRILISTDLVSRGIDIQQVCLVINYDLPK-----LKEVYIHRIGRSGR 344


>gi|326915068|ref|XP_003203843.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Meleagris
           gallopavo]
          Length = 369

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 228 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 282

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 283 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 328


>gi|156095288|ref|XP_001613679.1| RNA helicase-1 [Plasmodium vivax SaI-1]
 gi|148802553|gb|EDL43952.1| RNA helicase-1, putative [Plasmodium vivax]
          Length = 667

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 11/120 (9%)

Query: 567 QVEDVYDEINLA------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +VE V +E+ L+       + G  +L+    K+  +D+ EYL  + +    +H  +   E
Sbjct: 448 EVEYVKEELKLSYLLEVLQKTGPPVLIFCENKKDVDDVHEYLLLKGVNAIAIHGNLGQTE 507

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E I   R GK D+LVG ++  +GLD P    V   D  K+       + +  IGR  R
Sbjct: 508 RQEAINLFREGKKDILVGTDVASKGLDFPSIEHVINYDMPKD-----IENYVHRIGRTGR 562


>gi|58259441|ref|XP_567133.1| ATP-dependent RNA helicase ded1 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134107531|ref|XP_777650.1| hypothetical protein CNBA7700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687306|sp|Q5KN36|DED1_CRYNE RecName: Full=ATP-dependent RNA helicase ded1
 gi|50260344|gb|EAL23003.1| hypothetical protein CNBA7700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223270|gb|AAW41314.1| ATP-dependent RNA helicase ded1, putative [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 637

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A Q G  IL+ V TKRMA+ L ++L  R      +H +    ER   +   + G+  +LV
Sbjct: 418 AEQSGGLILVFVETKRMADTLCDFLCSRRHNATSIHGDRTQREREAALYAFKSGRAPILV 477

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
              +   GLDIP    V + D   +  +   T  I   GRA  NV +    +
Sbjct: 478 ATAVAARGLDIPNVTHVILYDLPND--VAEYTHRIGRTGRAG-NVGTSTAFF 526


>gi|294054801|ref|YP_003548459.1| primosomal protein N' [Coraliomargarita akajimensis DSM 45221]
 gi|293614134|gb|ADE54289.1| primosomal protein N' [Coraliomargarita akajimensis DSM 45221]
          Length = 755

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 24/128 (18%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK----EGFL---RSKTSLIQTI 675
           +I+ D R GK D+LVG  ++ +GLD P   LV ++DAD     E F    R+   ++Q  
Sbjct: 550 KILGDFRAGKIDLLVGTQMIAKGLDFPNVTLVGLVDADMSLHVEDFRAAERTFQLIVQVS 609

Query: 676 GRAARNVNS-KVILYADTI-TKSIQLA---------IDETTRRRE---KQLEHNKKHNI- 720
           GRA R   + +VI+   T     IQ A         ++E  +RRE       H  +H   
Sbjct: 610 GRAGRGDRAGEVIIQTSTPHAPPIQFARKSDFDGFQLEELEQRREFDYPPFRHLIRHVFR 669

Query: 721 --NPQSVK 726
             NPQ V+
Sbjct: 670 GRNPQKVE 677


>gi|254566967|ref|XP_002490594.1| Nucleolar protein required for maturation of 18S rRNA [Pichia
           pastoris GS115]
 gi|238030390|emb|CAY68313.1| Nucleolar protein required for maturation of 18S rRNA [Pichia
           pastoris GS115]
 gi|328350981|emb|CCA37381.1| DEAD-box protein, putative RNA helicase similar to S. cerevisiae
           FAL1 (YDR021W) involved in rRNA processing [Pichia
           pastoris CBS 7435]
          Length = 396

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + LTE+L + N  V  MH ++K  +R  I+ + R
Sbjct: 255 DLYDSLTVT-----QAVIFCNTKKKVDWLTEHLRKANFTVVSMHGDMKQEDRDRIMNEFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LG   VL+  ++   G+D+ +  LV   D        +K + I  IGR+ R
Sbjct: 310 LGNSRVLISTDVWARGIDVQQVSLVINYDIP-----FAKENYIHRIGRSGR 355


>gi|228469533|ref|ZP_04054526.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           uenonis 60-3]
 gi|228308883|gb|EEK17558.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           uenonis 60-3]
          Length = 436

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 21/171 (12%)

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL-- 583
           ++ SAT     L+  + I+V+ ++    +  PP   +S        YD   L   + L  
Sbjct: 184 VMFSATMPKEILKLSESILVDPVLVELAVAKPP---KSIMQTAYICYDAQKLPIIRSLFA 240

Query: 584 -------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  R ++   TK     L + L    + V  MHS++    R E++RD R+G+  VL
Sbjct: 241 NPESEVSRTIIFAGTKATVHALAQTLTRDGLPVAEMHSDLSQERREEVLRDFRMGRIKVL 300

Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSK 685
           V  +++  G+DI +  +V   +   D E +       +  IGR AR  + K
Sbjct: 301 VATDIVARGIDIDDIAVVINYEVPHDFEDY-------VHRIGRTARGADGK 344


>gi|325689360|gb|EGD31366.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK115]
          Length = 1167

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 14/227 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E   +  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F++  D    E      +    +  ++N  ID  +     + +  +  
Sbjct: 71  LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNVAASKL 129

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++  S+           +    + L +G   +   L+  L +  YK+    + +G + + 
Sbjct: 130 LLPDSID----------FKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYSLR 179

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           GD ++IF    E   +R+  FG++I+ I  F P     I+N+E+I I
Sbjct: 180 GDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIQNIESILI 225



 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 7/101 (6%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  +     + D   G++D+LV   ++  G+DIP    + + +AD  G     
Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL---- 908

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           ++L Q  GR  R   S  I YA  I +  ++  + + +R E
Sbjct: 909 STLYQLRGRVGR---SNRIAYAYLIYRPDKILTEVSEKRLE 946


>gi|320010356|gb|ADW05206.1| transcription-repair coupling factor [Streptomyces flavogriseus
           ATCC 33331]
          Length = 1176

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 100/238 (42%), Gaps = 22/238 (9%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           A+++ +K      +  + L    + + F +A +     R  + +      A  L +  + 
Sbjct: 15  ALSEAVKAASDGHRAHVDLVGPPAARPFAVAALAREAGRTVLAVTATGREAEDLAAALRT 74

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
             P + V  F S+ +    E   PR+DT   + + +     R+ H            +VV
Sbjct: 75  LLPPDTVAEFPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPRPDDPETGPVKVVV 129

Query: 276 SSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
           + V  +      G+G +E      V L  G + +  E++ +L    Y R ++   RG F 
Sbjct: 130 APVRSVLQPQVKGLGDLEP-----VALSSGRTADLGEVVDALAAAAYARVELVEKRGEFA 184

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           V G  +++FP   E+   RV  +G+D+EEI  F      KI +  ++++ A+  +  P
Sbjct: 185 VRGGILDVFPP-TEEHPLRVEFWGDDVEEIRYF------KIADQRSLEVAAHGLWAPP 235


>gi|94556865|gb|AAY89069.2| vasa-like protein [Litopenaeus vannamei]
          Length = 703

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+ V  KR+A+ +  YL E+  R   MH +    +R + + + R G  ++LV   +  
Sbjct: 518 KILVFVEQKRVADFVGTYLCEKKFRATTMHGDRYQAQREQALSEFRTGVHNILVATAVTA 577

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYAD 691
            GLDI   G+V   D  K+         +  IGR  R  N    +  Y D
Sbjct: 578 RGLDIKGIGVVVNYDLPKD-----IDEYVHRIGRTGRLGNRGLSISFYDD 622


>gi|152965035|ref|YP_001360819.1| transcription-repair coupling factor [Kineococcus radiotolerans
           SRS30216]
 gi|151359552|gb|ABS02555.1| transcription-repair coupling factor [Kineococcus radiotolerans
           SRS30216]
          Length = 1193

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 85/196 (43%), Gaps = 17/196 (8%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
           A +RP +V+         + +  + + P + V  F ++ +    E   PR+DT  ++ + 
Sbjct: 48  AAERPLLVVTATGRECEDMATWLRCYLPADQVAEFPAW-ETLPHERLSPRSDTVAQRLAV 106

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQ 305
           +     R+ H +          +VV+ +  +      G+  +E      V+L+ GD    
Sbjct: 107 LR----RLAHPSPDDPTTGEVRVVVAPIRAVLQPLVKGLADLEP-----VRLRAGDDAGL 157

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
           +  + +L    Y R D+   RG F V G  +++FP        RV  FG+++EE+  F  
Sbjct: 158 ETAVEALAAAAYSRVDMVERRGEFAVRGGILDVFPPTRPH-PLRVEFFGDEVEEVRSFS- 215

Query: 366 LTGQKIRNVETIKIYA 381
           +  Q+   VE   ++A
Sbjct: 216 VADQRTLEVEPDGVWA 231


>gi|325280173|ref|YP_004252715.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324311982|gb|ADY32535.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 417

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 10/102 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           +K+  +DL   L    + V  MHS+++  +R  ++ D + GK D+LV  +++  G+DI +
Sbjct: 253 SKQKVKDLAYSLKRMKLNVAAMHSDLEQEQREAVMLDFKNGKTDILVATDIVARGIDIDD 312

Query: 651 CGLVAILDA--DKEGFLRSKTSLIQTIGRAAR-NVNSKVILY 689
            GLV   D   D E +       I  IGR AR N +   I +
Sbjct: 313 IGLVINYDVPHDPEDY-------IHRIGRTARANADGVAITF 347


>gi|197246579|gb|AAI68680.1| Ifih1 protein [Rattus norvegicus]
          Length = 775

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           SEVK +   E+ E+I   R G+ ++L+   +  EGLDI EC +V      + G + ++ +
Sbjct: 511 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 565

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           ++Q  GR AR   S  +L   + +   +  I    R +      N+  N+ P+    KI+
Sbjct: 566 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 624

Query: 731 EVIDPILLEDAATTNISIDAQ 751
           E+    +LE       SI  Q
Sbjct: 625 ELQVQSILEKKMKVKRSIARQ 645


>gi|262168757|ref|ZP_06036452.1| helicase-related protein [Vibrio cholerae RC27]
 gi|262022875|gb|EEY41581.1| helicase-related protein [Vibrio cholerae RC27]
          Length = 978

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           Q +  ++I    G  DP     +  TQ   E VY   +   Q   R L   ++K+ A+ +
Sbjct: 404 QAVNYQEIPWRNGKFDPDSLDNALATQRRAEHVYQHWHQKKQT--RTLAFCVSKKHADFM 461

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
            E+   + I+   ++S+ K + R + ++ L  GK D+L  ++L  EG D+P    + +L 
Sbjct: 462 AEFCLSKGIKAIAVYSDSK-VRRNQALQWLDSGKIDILFSVDLFNEGTDLPAIDTILMLR 520

Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680
             +     SK   +Q +GR  R
Sbjct: 521 PTE-----SKILFLQQLGRGLR 537


>gi|257096036|ref|NP_082111.2| interferon-induced helicase C domain-containing protein 1 isoform 1
           [Mus musculus]
 gi|62510931|sp|Q8R5F7|IFIH1_MOUSE RecName: Full=Interferon-induced helicase C domain-containing
           protein 1; AltName: Full=Helicase with 2 CARD domains;
           Short=Helicard; AltName: Full=Interferon induced with
           helicase C domain protein 1; AltName: Full=Melanoma
           differentiation-associated protein 5; Short=MDA-5
 gi|18698981|gb|AAL77205.1| HELICARD [Mus musculus]
 gi|123235746|emb|CAM21790.1| interferon induced with helicase C domain 1 [Mus musculus]
 gi|132252386|gb|ABO33313.1| melanoma differentiation-associated protein 5 [Mus musculus]
          Length = 1025

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           SEVK +   E+ E+I   R G+ ++L+   +  EGLDI EC +V      + G + ++ +
Sbjct: 761 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 815

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           ++Q  GR AR   S  +L   + +   +  I    R +      N+  N+ P+    KI+
Sbjct: 816 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 874

Query: 731 EVIDPILLEDAATTNISIDAQ 751
           E+    +LE       SI  Q
Sbjct: 875 ELQVQSILEKKMKVKRSIAKQ 895


>gi|325202005|gb|ADY97459.1| transcription-repair coupling factor [Neisseria meningitidis
           M01-240149]
 gi|325208243|gb|ADZ03695.1| transcription-repair coupling factor [Neisseria meningitidis
           NZ-05/33]
          Length = 1227

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 17/212 (8%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  RRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L S L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            V  I++     +    PT N A K  +   +
Sbjct: 200 PVSEIRLLPAHEF----PTDNEAQKIFRSRFR 227



 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 918  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 974

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 975  -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1010


>gi|304391135|ref|ZP_07373087.1| transcription-repair coupling factor [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326018|gb|EFL93264.1| transcription-repair coupling factor [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 1165

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 14/172 (8%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+AP+   A QL  E   +     VE F  + +    E   PRTDT   +  +++
Sbjct: 47  ERLTVVLAPSTRAATQLARELGAY--TAGVELFPDW-ETLPHERLSPRTDTMARRIWALH 103

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
               R+ H   +  +      V ++++ +     +  Y    VQ  +GD  ++  + + L
Sbjct: 104 ----RVTHPHPQDAVHFLVMPVRAALAPVNA--HIADYPLFTVQ--VGDPYDRDTMAADL 155

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEF 363
           ++  Y+R D+   RG F V G  +++F P+    V  R+ +FG++++ I  F
Sbjct: 156 LRLGYERVDMVGARGQFAVRGGLLDVFSPTSAHPV--RIELFGDEVDTIRAF 205


>gi|74225485|dbj|BAE31652.1| unnamed protein product [Mus musculus]
          Length = 1025

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           SEVK +   E+ E+I   R G+ ++L+   +  EGLDI EC +V      + G + ++ +
Sbjct: 761 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 815

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           ++Q  GR AR   S  +L   + +   +  I    R +      N+  N+ P+    KI+
Sbjct: 816 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 874

Query: 731 EVIDPILLEDAATTNISIDAQ 751
           E+    +LE       SI  Q
Sbjct: 875 ELQVQSILEKKMKVKRSIAKQ 895


>gi|328872313|gb|EGG20680.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
          Length = 2876

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+++  II   +LG   +LV  N+L EGLD+ EC LV   ++D      S  S+IQ  GR
Sbjct: 787 TIDQHRIIEQFKLGHCKLLVATNVLEEGLDVSECNLVICFESD-----FSMRSMIQRRGR 841

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
            AR+ N   +     + +  QL I +   +RE ++
Sbjct: 842 -ARSENGNFMY----LREEKQLDIQQDFAKREAEM 871


>gi|309798694|ref|ZP_07692959.1| ATP-dependent DNA helicase RecG [Streptococcus infantis SK1302]
 gi|308117637|gb|EFO55048.1| ATP-dependent DNA helicase RecG [Streptococcus infantis SK1302]
          Length = 392

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 60/104 (57%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT +  E+  +V  +H ++K+ E+ +I+++ +  K D+LV   ++  G+++P   +
Sbjct: 236 LSEELTAHFAEKA-KVALLHGKMKSDEKDQIMQEFKERKTDILVSTTVIEVGVNVPNATV 294

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 295 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 334


>gi|281345231|gb|EFB20815.1| hypothetical protein PANDA_010757 [Ailuropoda melanoleuca]
          Length = 404

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 268 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 322

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 323 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 368


>gi|262381389|ref|ZP_06074527.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
 gi|262296566|gb|EEY84496.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
          Length = 408

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 9/104 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   ++L   L      V  MHS+++  +R E++++ + G  D+LV  +++ 
Sbjct: 229 RVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVA 288

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSK 685
            G+DI +  LV   D   D E +       +  IGR AR  N +
Sbjct: 289 RGIDINDIKLVVNFDIPHDPEDY-------VHRIGRTARGTNGE 325


>gi|4490561|emb|CAB38638.1| RNA helicase [Plasmodium cynomolgi]
          Length = 182

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++  +TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 86  DLYDTLTIT-----QAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 140

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  ++   GLD+P+  L+
Sbjct: 141 SGASRVLISTDVWARGLDVPQVSLI 165


>gi|15640830|ref|NP_230461.1| helicase-related protein [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121585747|ref|ZP_01675542.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           2740-80]
 gi|153819998|ref|ZP_01972665.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           NCTC 8457]
 gi|153821360|ref|ZP_01974027.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           B33]
 gi|227080991|ref|YP_002809542.1| helicase-related protein [Vibrio cholerae M66-2]
 gi|298499058|ref|ZP_07008865.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
 gi|9655262|gb|AAF93976.1| helicase-related protein [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121550110|gb|EAX60126.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           2740-80]
 gi|126509463|gb|EAZ72057.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           NCTC 8457]
 gi|126521070|gb|EAZ78293.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           B33]
 gi|227008879|gb|ACP05091.1| helicase-related protein [Vibrio cholerae M66-2]
 gi|297543391|gb|EFH79441.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
          Length = 979

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           Q +  ++I    G  DP     +  TQ   E VY   +   Q   R L   ++K+ A+ +
Sbjct: 405 QAVNYQEIPWRNGKFDPDSLDNALATQRRAEHVYQHWHQKKQT--RTLAFCVSKKHADFM 462

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
            E+   + I+   ++S+ K + R + ++ L  GK D+L  ++L  EG D+P    + +L 
Sbjct: 463 AEFCLSKGIKAIAVYSDSK-VRRNQALQWLDSGKIDILFSVDLFNEGTDLPAIDTILMLR 521

Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680
             +     SK   +Q +GR  R
Sbjct: 522 PTE-----SKILFLQQLGRGLR 538


>gi|289178790|gb|ADC86036.1| Transcription-repair coupling factor [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 1248

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 26/197 (13%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF-VSYYDYYQPEAYVPRTDTYIEKES 249
           A ++P +++ P+   A  L  + ++++  +  E   +  ++    E   PR DT   +  
Sbjct: 129 ADRKPVVIVVPSGREAEDLVGDLRSWYDGDPNEVAQLMAWETLPHERLSPRADTVANR-- 186

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSV-----SCIYGIGSVES--YSQMIVQLKIGDS 302
              E   R+ H  + S +     I+V  V       + GIG V+   ++Q       G+ 
Sbjct: 187 --METFYRLCHPQSDSEMFGPIRILVMPVRSLIQPVVAGIGDVKPLVFAQ-------GEE 237

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEIS 361
           +  ++ +  LV+  Y R D+ + RG F V G  I++F P+    V  R+  FG++I+ I 
Sbjct: 238 ITLEDAVQGLVRNSYTRVDLVMDRGEFAVRGGIIDVFVPTEPHPV--RIEFFGDEIDTIR 295

Query: 362 EFYP----LTGQKIRNV 374
            F+       G+ IR+V
Sbjct: 296 RFHSSDQRTYGEPIRSV 312


>gi|70663482|emb|CAJ15140.1| PL10a protein [Platynereis dumerilii]
          Length = 771

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 5/119 (4%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D +N +    L  L+ V TK+ A+ L  +LY        +H +    ER E +R+ R 
Sbjct: 538 LLDLLNASGPDSL-TLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKEREEALRNFRS 596

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           GK  VLV   +   GLDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 597 GKTPVLVATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDK 655


>gi|254229022|ref|ZP_04922443.1| transcription-repair coupling factor [Vibrio sp. Ex25]
 gi|262394765|ref|YP_003286619.1| transcription-repair coupling factor [Vibrio sp. Ex25]
 gi|151938490|gb|EDN57327.1| transcription-repair coupling factor [Vibrio sp. Ex25]
 gi|262338359|gb|ACY52154.1| transcription-repair coupling factor [Vibrio sp. Ex25]
          Length = 1153

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 124/298 (41%), Gaps = 38/298 (12%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L  + G+     +A++ +     ++++ P+  +A +L +E + F      +  VS +  +
Sbjct: 21  LGNLPGAALPLAIAELAKQHSSHSLLIVPDPQIALKLQAEIEQF-----TDQTVSLFPDW 75

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           +   Y    D +   +  I+E+I R+    +    +RN   +V   + +      +   Q
Sbjct: 76  ETLPY----DNFSPHQEIISERIARLYQLPS----QRNGITIVPVSTVLQRQSPRDFLLQ 127

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             + +K GD +  ++L   L    Y+  D     G +   G  +++FP   +D  +R+  
Sbjct: 128 HTLMVKTGDRLSLEKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSDD-PYRIDF 186

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           F ++I+ I  F P   + I +++ I++     +    PT   A++  +   + +      
Sbjct: 187 FDDEIDTIRTFDPENQRSIDDIQQIQLLPAHEF----PTTKEAIEDFRTRWRTQ------ 236

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSC-QSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                EA+R  + I     M  T G+    IE +              TLFEY+PEDS
Sbjct: 237 ----FEARREPESIY----MQVTKGTWPPGIEYWQPLFFDHT-----ETLFEYLPEDS 281



 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AEDL + + E  I V +     + LERI  + D    +F+VLV   ++  G+D+P  
Sbjct: 826 EKTAEDLQKLIPEARITVAHGQMRERELERI--MNDFYHQRFNVLVCTTIIETGIDVPTA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + +  AD  G       L Q  GR  R+
Sbjct: 884 NTIIMDRADNLGL----AQLHQLRGRVGRS 909


>gi|315301106|ref|ZP_07872400.1| transcription-repair-coupling factor [Listeria ivanovii FSL F6-596]
 gi|313630527|gb|EFR98366.1| transcription-repair-coupling factor [Listeria ivanovii FSL F6-596]
          Length = 470

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 64/321 (19%), Positives = 135/321 (42%), Gaps = 25/321 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDGKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   L+     IV+ 
Sbjct: 74  MDSDRLFLY-------------PADELISSELSISSPELRGQRVEALDFLISGKPGIVIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    + +  G+ ++ + L   L+   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIIEGEEIDPEVLRQKLLTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTSRVEEFRLLPATEIILDQNYYPDI 239

Query: 396 MKYIKEELKMRLIEL-EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           +K +++++   L EL EKE +    + LE+ +           S    + + +Y+    P
Sbjct: 240 VKRLEKKMMFTLNELKEKEDKXXXXENLEEDLE-------MLRSGVKPDMFFKYIGLAYP 292

Query: 455 GEPPPTLFEYIPEDSLLFVDE 475
              P +LF+Y P+++ + +DE
Sbjct: 293 D--PASLFDYFPKNTAILLDE 311


>gi|308389402|gb|ADO31722.1| transcription-repair coupling factor [Neisseria meningitidis
           alpha710]
          Length = 1227

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 17/212 (8%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  RRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L S L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            V  I++     +    PT N A K  +   +
Sbjct: 200 PVSEIRLLPAHEF----PTDNEAQKIFRSRFR 227



 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 918  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 974

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 975  -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1010


>gi|296875899|ref|ZP_06899960.1| DNA helicase RecG [Streptococcus parasanguinis ATCC 15912]
 gi|296433140|gb|EFH18926.1| DNA helicase RecG [Streptococcus parasanguinis ATCC 15912]
          Length = 671

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+L  +  +R  R+  +H ++K+ E+  I++  +  + DVLV   ++  G+++P   +
Sbjct: 484 LQEELEAFFGQRA-RISLLHGKMKSEEKDAIMQAFKEHQVDVLVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R N  S  IL A+  T S
Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGNKQSYAILVANPKTDS 582


>gi|229505575|ref|ZP_04395085.1| helicase-related protein [Vibrio cholerae BX 330286]
 gi|229510753|ref|ZP_04400232.1| helicase-related protein [Vibrio cholerae B33]
 gi|229517874|ref|ZP_04407318.1| helicase-related protein [Vibrio cholerae RC9]
 gi|229608593|ref|YP_002879241.1| helicase-related protein [Vibrio cholerae MJ-1236]
 gi|254847949|ref|ZP_05237299.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|255744613|ref|ZP_05418564.1| helicase-related protein [Vibrio cholera CIRS 101]
 gi|262161255|ref|ZP_06030366.1| helicase-related protein [Vibrio cholerae INDRE 91/1]
 gi|229344589|gb|EEO09563.1| helicase-related protein [Vibrio cholerae RC9]
 gi|229350718|gb|EEO15659.1| helicase-related protein [Vibrio cholerae B33]
 gi|229357798|gb|EEO22715.1| helicase-related protein [Vibrio cholerae BX 330286]
 gi|229371248|gb|ACQ61671.1| helicase-related protein [Vibrio cholerae MJ-1236]
 gi|254843654|gb|EET22068.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|255737644|gb|EET93038.1| helicase-related protein [Vibrio cholera CIRS 101]
 gi|262029005|gb|EEY47658.1| helicase-related protein [Vibrio cholerae INDRE 91/1]
          Length = 978

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           Q +  ++I    G  DP     +  TQ   E VY   +   Q   R L   ++K+ A+ +
Sbjct: 404 QAVNYQEIPWRNGKFDPDSLDNALATQRRAEHVYQHWHQKKQT--RTLAFCVSKKHADFM 461

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
            E+   + I+   ++S+ K + R + ++ L  GK D+L  ++L  EG D+P    + +L 
Sbjct: 462 AEFCLSKGIKAIAVYSDSK-VRRNQALQWLDSGKIDILFSVDLFNEGTDLPAIDTILMLR 520

Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680
             +     SK   +Q +GR  R
Sbjct: 521 PTE-----SKILFLQQLGRGLR 537


>gi|157822253|ref|NP_001102669.1| interferon-induced helicase C domain-containing protein 1 [Rattus
           norvegicus]
 gi|149022117|gb|EDL79011.1| similar to HELICARD (predicted) [Rattus norvegicus]
          Length = 1027

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           SEVK +   E+ E+I   R G+ ++L+   +  EGLDI EC +V      + G + ++ +
Sbjct: 763 SEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIA 817

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           ++Q  GR AR   S  +L   + +   +  I    R +      N+  N+ P+    KI+
Sbjct: 818 MVQARGR-ARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKIL 876

Query: 731 EVIDPILLEDAATTNISIDAQ 751
           E+    +LE       SI  Q
Sbjct: 877 ELQVQSILEKKMKVKRSIARQ 897


>gi|327262701|ref|XP_003216162.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Anolis
           carolinensis]
          Length = 420

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 269 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 323

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 324 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 369


>gi|307706894|ref|ZP_07643696.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
 gi|307617767|gb|EFN96932.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
          Length = 524

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            G+  + + D     +   S +  IGR  R   S
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336


>gi|291531663|emb|CBK97248.1| transcription-repair coupling factor [Eubacterium siraeum 70/3]
          Length = 1171

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 98/218 (44%), Gaps = 15/218 (6%)

Query: 164 IHSREKVQLLL-GVTGSGKT-FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
           I S E V LL+ G++   K  F  A   E +  P +V+  ++  AA+L  +        A
Sbjct: 21  ILSDEPVPLLVTGLSHIHKAHFLAALCYEKLPSPVLVITESEASAAKLTEDINTMCGDTA 80

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
              F        P + +   DT  + +    ++I+ +    + +L  +   I+ SS + +
Sbjct: 81  AYQF--------PASDLTLADTEAQSQEYEYKRIETL----SAALSGKARLIISSSEAAV 128

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                 +   +  V LK GD ++  EL  +LV   Y R D+   +G F   G   +I+P 
Sbjct: 129 QLTVPKDVLEKHTVTLKAGDEIKLDELAKTLVSAGYTRCDMIEGKGQFSFRGSLADIYPV 188

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
              D   R+ ++G++I+ ++ F   T ++I  V+++ I
Sbjct: 189 S-SDYPVRIELWGDEIDTVASFDLDTQRRIDTVKSVSI 225



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A D+   + E NI +   H  +   E +++ R L  G+ DVLV   L+  G+D+P C  +
Sbjct: 842 AADIHSMVPEANIGI--AHGRMSEEELLDVWRRLIEGEIDVLVCTTLIETGVDVPNCNTL 899

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681
            I +AD  G       L Q  GR  R 
Sbjct: 900 IIENADCMGL----AQLHQLRGRVGRT 922


>gi|195572505|ref|XP_002104236.1| GD20854 [Drosophila simulans]
 gi|194200163|gb|EDX13739.1| GD20854 [Drosophila simulans]
          Length = 784

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R  R G   +LV   +   G
Sbjct: 549 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 608

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 609 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 652


>gi|221056789|ref|XP_002259532.1| RNA helicase-1 [Plasmodium knowlesi strain H]
 gi|193809604|emb|CAQ40305.1| RNA helicase-1, putative [Plasmodium knowlesi strain H]
          Length = 669

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 11/120 (9%)

Query: 567 QVEDVYDEINLA------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +VE V +E+ L+       + G  +L+    K+  +D+ EYL  + +    +H  +   E
Sbjct: 450 EVEYVKEELKLSYLLEVLQKTGPPVLIFCENKKDVDDVHEYLLLKGVNAIAIHGNLGQTE 509

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E I   R GK D+LVG ++  +GLD P    V   D  K+       + +  IGR  R
Sbjct: 510 RQEAINLFREGKKDILVGTDVASKGLDFPSIEHVINYDMPKD-----IENYVHRIGRTGR 564


>gi|307709536|ref|ZP_07645990.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
 gi|307619667|gb|EFN98789.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
          Length = 523

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            G+  + + D     +   S +  IGR  R   S
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336


>gi|299143244|ref|ZP_07036324.1| transcription-repair coupling factor [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298517729|gb|EFI41468.1| transcription-repair coupling factor [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 1161

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 107/235 (45%), Gaps = 21/235 (8%)

Query: 174 LGVTG--SGKTFTMA-KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           +GV G   G+   MA  ++  +++P +++AP+ + A ++Y +  N    +         D
Sbjct: 28  IGVYGITDGQIGHMAFSILSEIKKPILIIAPDNLKARKIYEDLLNLGIKDC--------D 79

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL-LERNDCIVVSSVSCIYGIGSVES 289
            Y      P+ + ++    S +    ++R  A ++L + RN  +V ++ +    I   E 
Sbjct: 80  LY------PKREIFLYDRDSKSLDNIKIRIRAMQNLAMNRNRVLVATTEALRDKIADREV 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           + + I+ +   D ++ K L  +L+   Y+R+      G F + G  I+I+        +R
Sbjct: 134 FKKYILNITCSDELDIKLLEKNLITMGYERRSQVEGVGQFAIRGAIIDIYTPI---SPYR 190

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           + +F  +++ I  F   T + I N+  ++I   S ++       T +K +  ELK
Sbjct: 191 IELFDVEVDSIRSFDIATQRSIENLTDVEIGPVSDFLLLDEYRQTILKNLNAELK 245


>gi|222153462|ref|YP_002562639.1| helicase [Streptococcus uberis 0140J]
 gi|222114275|emb|CAR42899.1| Putative helicase [Streptococcus uberis 0140J]
          Length = 955

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 9/145 (6%)

Query: 545 VEQIIRPTGLVDPPVEIRS--ARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTE 600
           V  II    L+D   +  +  +  ++  + D++N     G  +R L+   +++ A +L+ 
Sbjct: 407 VTDIIIDGELIDENSDFSTLVSEERIRHILDKVNYYGYDGEKVRGLIFCSSRKEAVELSH 466

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
               R ++ + +  +   + R E+I DL  G  D ++ +++  EG+DIP    V +L   
Sbjct: 467 QFNARGLKTKSLTGDDPQVVREEVITDLESGLLDYILTVDIFNEGIDIPSVNQVVMLRN- 525

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSK 685
                +S    IQ +GR  R  +SK
Sbjct: 526 ----TQSSIVFIQQLGRGLRKHSSK 546


>gi|221112031|ref|XP_002166522.1| PREDICTED: similar to Eukaryotic initiation factor 4A-III [Hydra
           magnipapillata]
          Length = 509

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 368 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMRESNFTVVSMHGDMPQKERDSIMKEFR 422

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  LV   D        ++   I  IGR+ R
Sbjct: 423 SGSSRVLISTDVWSRGLDVPQVSLVINYDLPN-----NRELYIHRIGRSGR 468


>gi|297200238|ref|ZP_06917635.1| transcription-repair coupling factor [Streptomyces sviceus ATCC
           29083]
 gi|197717008|gb|EDY61042.1| transcription-repair coupling factor [Streptomyces sviceus ATCC
           29083]
          Length = 1190

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 16/213 (7%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           A+A+ +       ++ + L    + + F +A +     RP + +      A  L +  ++
Sbjct: 29  ALAEAITAAQDGNRMHVDLVGPPAARPFAIAALAREAGRPVLAVTATGREAEDLAAALRS 88

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
             P   V  + S+ +    E   PR+DT   + + +     R+ H            +VV
Sbjct: 89  LLPSEGVVEYPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPRPDDPETGPVSVVV 143

Query: 276 SSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
           + V  +      G+G +E      V L+ G + +   ++ +L    Y R ++   RG F 
Sbjct: 144 APVRSVLQPQVKGLGDLEP-----VALRTGQTADLNAIVEALAAAAYARVELVEKRGEFA 198

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           V G  +++FP   E+   RV  +G+D+EEI  F
Sbjct: 199 VRGGILDVFPP-TEEHPLRVEFWGDDVEEIRYF 230


>gi|328466535|gb|EGF37675.1| ComF operon protein 1 [Lactobacillus rhamnosus MTCC 5462]
          Length = 316

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R E +   R G+ +VLV   +L  G+ +P C +  +  AD E    S ++LIQ  GRA 
Sbjct: 226 QRAEKVTAFRQGQLEVLVTTTILERGVTVPRCAVAVLAAADPEF---SASALIQIAGRAG 282

Query: 680 RNVNS---KVILYADTITKSIQLA 700
           R  +S    V+ ++D  T ++  A
Sbjct: 283 RAADSPDDPVVFFSDRYTLAMLAA 306


>gi|307707070|ref|ZP_07643867.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK321]
 gi|307617596|gb|EFN96766.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK321]
          Length = 671

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H ++K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQDFKEKKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R    S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGYKQSYAVLVANPKTDS 582


>gi|238917833|ref|YP_002931350.1| transcription-repair coupling factor (superfamily II helicase)
           [Eubacterium eligens ATCC 27750]
 gi|238873193|gb|ACR72903.1| transcription-repair coupling factor (superfamily II helicase)
           [Eubacterium eligens ATCC 27750]
          Length = 1206

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 97/205 (47%), Gaps = 16/205 (7%)

Query: 278 VSCIYGIGS----VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+ I GI      V+ + + ++ LK GD ++ +++   L    ++R  +   +G F + G
Sbjct: 138 VTTIDGISDMLLPVDRFKRAVINLKKGDILDVEDMAKKLTAMGFERFGMVEAKGQFAIRG 197

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+IF S+ ++   R+ ++ ++I+ I  F   + + I N ++  ++  + ++     + 
Sbjct: 198 GIIDIF-SYTDEAPVRIELWDDEIDSIRAFDADSQRSIENYKSYTVFPATEFLFTEDEIE 256

Query: 394 TAMKYIKEEL--KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
             ++ I+ E   +M+L   +K  R  E       +    +    TG      +YS+++  
Sbjct: 257 QGIEKIRHEKDEQMKLFGADKRKRTKEQIEAGNHLNRMFDDALRTG------DYSKFIY- 309

Query: 452 RNPGEPPPTLFEYIPE-DSLLFVDE 475
               +   +L EY P+ D+L+ VDE
Sbjct: 310 -TFADRVSSLAEYFPKGDTLIVVDE 333



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y H ++   E  +I+ D   G+ DVLV   ++  G+DI  C  + I DAD+ G     
Sbjct: 886 VAYAHGQMAKRELEKIMCDFVNGEIDVLVSTTIIETGMDISNCNTMIIEDADRFGL---- 941

Query: 669 TSLIQTIGRAARN 681
           + L Q  GR  R+
Sbjct: 942 SQLYQLRGRVGRS 954


>gi|189347343|ref|YP_001943872.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
 gi|189341490|gb|ACD90893.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
          Length = 610

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           IL+ V TK M  +L E L  R      ++ ++   +R   +  L+ G   +++  ++   
Sbjct: 266 ILIFVRTKTMTLELAEKLQARGYAASALNGDMAQNQRERTVDQLKDGSLSIVIATDVAAR 325

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D  +D E ++      I   GRA R+   + IL+     K++  AI+
Sbjct: 326 GLDVDRISHVINYDIPSDTESYVHR----IGRTGRAGRS--GEAILFVSPREKNMLYAIE 379

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           + TR+R + +E      IN + V +    + D I  ED
Sbjct: 380 KATRKRIELMELPSTEIINDKRVAKFKQRITDTIAAED 417


>gi|254225064|ref|ZP_04918678.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V51]
 gi|125622451|gb|EAZ50771.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V51]
          Length = 979

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           Q +  ++I    G  DP     +  TQ   E VY   +   Q   R L   ++K+ A+ +
Sbjct: 405 QAVNYQEIPWRNGKFDPDSLDNALATQRRAEHVYQHWHQKKQT--RTLAFCVSKKHADFM 462

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
            E+   + I+   ++S+ K + R + ++ L  GK D+L  ++L  EG D+P    + +L 
Sbjct: 463 AEFCLSKGIKAIAVYSDSK-VRRNQALQWLDSGKIDILFSVDLFNEGTDLPAIDTILMLR 521

Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680
             +     SK   +Q +GR  R
Sbjct: 522 PTE-----SKILFLQQLGRGLR 538


>gi|327283103|ref|XP_003226281.1| PREDICTED: interferon-induced helicase C domain-containing protein
           1-like [Anolis carolinensis]
          Length = 1006

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 13/93 (13%)

Query: 604 ERNIRVRYM-----HSEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E  ++  Y+     +SE K +   E+ ++I   R+GK ++L+   +  EGLDIPEC +V 
Sbjct: 723 EAGVKAHYLIGAGHNSEFKPMTQNEQKDVIEKFRIGKINLLIATTVAEEGLDIPECNIVI 782

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
                + G + ++ +++Q  GRA  + ++ V++
Sbjct: 783 -----RYGLVTNEIAMVQARGRARADESTYVLV 810


>gi|325136213|gb|EGC58821.1| transcription-repair coupling factor [Neisseria meningitidis M0579]
          Length = 1296

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 17/212 (8%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  RRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L S L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            V  I++     +    PT N A K  +   +
Sbjct: 200 PVSEIRLLPAHEF----PTDNEAQKIFRSRFR 227



 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 987  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1043

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 1044 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1079


>gi|312898312|ref|ZP_07757702.1| UVR domain protein [Megasphaera micronuciformis F0359]
 gi|310620231|gb|EFQ03801.1| UVR domain protein [Megasphaera micronuciformis F0359]
          Length = 169

 Score = 47.0 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 4/46 (8%)

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
           + KAH+K LR+++ L     N+EEAARIRDEIK L     F+G +D
Sbjct: 126 RTKAHIKKLRRELKLMVAQENYEEAARIRDEIKALS----FEGGED 167


>gi|293364998|ref|ZP_06611715.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
 gi|291316448|gb|EFE56884.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
          Length = 524

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            G+  + + D     +   S +  IGR  R   S
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336


>gi|172038623|ref|YP_001805124.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51142]
 gi|171700077|gb|ACB53058.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51142]
          Length = 1159

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           ++L+ G + + K+    LVK  Y+R ++  + G +   GD ++IFP   E V  R+  FG
Sbjct: 144 LKLQAGMTEKSKKFDEGLVKLGYERVNLVEVEGQWSRRGDIVDIFPVSSE-VPIRLEWFG 202

Query: 355 NDIEEISEFYPLTGQKIRNVETI 377
           +++E+I EF P T + + ++E I
Sbjct: 203 DELEKIREFDPATQRSLDSIENI 225


>gi|15674226|ref|NP_268401.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12725313|gb|AAK06342.1|AE006453_6 ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 666

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L EY +    ++  +H ++K  E+ +I+++ +  K D+LV   ++  G+D+P   ++ I
Sbjct: 487 ELNEY-FGLFAKIGLLHGKMKNDEKDQIMQEFKAKKLDILVSTTVIEVGVDVPNATIMVI 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           +DAD+ G     + L Q  GR  R    S  IL A+
Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGTKKSYAILVAN 577


>gi|331266806|ref|YP_004326436.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
 gi|326683478|emb|CBZ01096.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
          Length = 525

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            G+  + + D     +   S +  IGR  R   S
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336


>gi|322387454|ref|ZP_08061064.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
           700779]
 gi|321141983|gb|EFX37478.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
           700779]
          Length = 524

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            G+  + + D     +   S +  IGR  R   S
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336


>gi|229513052|ref|ZP_04402518.1| helicase-related protein [Vibrio cholerae TMA 21]
 gi|229349945|gb|EEO14899.1| helicase-related protein [Vibrio cholerae TMA 21]
          Length = 978

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           Q +  ++I    G  DP     +  TQ   E VY   +   Q   R L   ++K+ A+ +
Sbjct: 404 QAVNYQEIPWRNGKFDPDSLDNALATQRRAEHVYQHWHQKKQT--RTLAFCVSKKHADFM 461

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
            E+   + I+   ++S+ K + R + ++ L  GK D+L  ++L  EG D+P    + +L 
Sbjct: 462 AEFCLSKGIKAIAVYSDSK-VRRNQALQWLDSGKIDILFSVDLFNEGTDLPAIDTILMLR 520

Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680
             +     SK   +Q +GR  R
Sbjct: 521 PTE-----SKILFLQQLGRGLR 537


>gi|209879417|ref|XP_002141149.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556755|gb|EEA06800.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 590

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 19/144 (13%)

Query: 552 TGLVDP-PVEIRSARTQVEDVYDEINLAAQQ-------------GLRILLTVLTKRMAED 597
           T LVDP  V +  A     +V  E+    Q+               R+L+    K+  ++
Sbjct: 350 TALVDPIVVNVGRAGATTLNVLQELEYVRQECRLPHILQSLQKTAPRVLIFCENKKDVDE 409

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           + EYL  + ++   +HS +   +R + +   RLG  DVL+G ++  +GLD P    V   
Sbjct: 410 IHEYLLLKGVKAAAIHSGLSQEQRRDSVEQFRLGLKDVLIGTDVASKGLDFPNIHHVINY 469

Query: 658 DADKEGFLRSKTSLIQTIGRAARN 681
           D  KE       + +  IGR  R 
Sbjct: 470 DMPKE-----IENYVHRIGRTGRG 488


>gi|284046682|ref|YP_003397022.1| transcription-repair coupling factor [Conexibacter woesei DSM
           14684]
 gi|283950903|gb|ADB53647.1| transcription-repair coupling factor [Conexibacter woesei DSM
           14684]
          Length = 1112

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L++G+ ++  E    LV   Y+R D    RG F + G  ++++P+  ED A RV +FG++
Sbjct: 139 LRVGELMDLDESAEDLVAAGYERVDQVEDRGQFAIRGGLLDLYPA-TEDRAVRVDLFGDE 197

Query: 357 IEEISEFYPLTGQKIRNVETIKI 379
           IE +  F   T + + + E +++
Sbjct: 198 IESLRWFSTFTQRSLGDAEEVEV 220


>gi|217076282|ref|YP_002333998.1| transcription-repair coupling factor [Thermosipho africanus TCF52B]
 gi|217036135|gb|ACJ74657.1| transcription-repair coupling factor [Thermosipho africanus TCF52B]
          Length = 909

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 4/99 (4%)

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           + + +++LK+GD  E  E L S  K  Y+R       G F + GD I+ +  +  +V  R
Sbjct: 73  FKKYVIELKVGDIFESPEELFS--KLGYERVYNVTEGGQFSIRGDIIDFYGPN--EVPTR 128

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           + +F N IE+I  F P T + IR +E   I     Y+ P
Sbjct: 129 IELFDNLIEDIRHFDPSTQKSIRKIEKALILPAREYIEP 167



 Score = 37.4 bits (85), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +A+ L E + E +I +       K +E++  I +   GK DVLV  +++  G+DIP    
Sbjct: 614 VAKKLKEIVPEVSIDIANGQMPKKRMEKV--IEEFYHGKLDVLVATSIIENGVDIPNANT 671

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARN 681
           + + DA + G       L Q  GR  R+
Sbjct: 672 LIVDDAHRYGL----AQLYQLRGRVGRS 695


>gi|254448948|ref|ZP_05062403.1| ATP-dependent DNA helicase RecG [gamma proteobacterium HTCC5015]
 gi|198261485|gb|EDY85775.1| ATP-dependent DNA helicase RecG [gamma proteobacterium HTCC5015]
          Length = 700

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 17/162 (10%)

Query: 564 ARTQVEDVYDEINLAAQQGLRI--LLTVLTK------RMAEDLTEYLYER--NIRVRYMH 613
           A ++  DV + I  A +QG ++  + T++ +      + AED    L E    +R+  +H
Sbjct: 472 AESRRADVIERIRSACEQGRQVYWVCTLIEESEMVQCQAAEDTASSLAEAMPAVRIGLVH 531

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
             +K  ++   +   + G  D+LV   ++  G+D+P   L+ I +A++ G     + L Q
Sbjct: 532 GRMKPADKERTMAQFKAGDIDLLVATTVIEVGVDVPNASLMVIENAERLGL----SQLHQ 587

Query: 674 TIGRAARNV--NSKVILYADTITKSIQLAIDETTRRREKQLE 713
             GR  R    +S V+LY + + +  +  +D T RR     E
Sbjct: 588 LRGRVGRGAVESSCVLLYKNPLGEKARRRLD-TMRRSNDGFE 628


>gi|325954433|ref|YP_004238093.1| transcription-repair coupling factor [Weeksella virosa DSM 16922]
 gi|323437051|gb|ADX67515.1| transcription-repair coupling factor [Weeksella virosa DSM 16922]
          Length = 1114

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 97/214 (45%), Gaps = 24/214 (11%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G  GS  +F +A++     R  +++  +K  AA   ++ +       V ++        P
Sbjct: 29  GFLGSALSFAIAQLYLQTNRSILMVTDDKEEAAYWLNDLEALLNQEQVLFY--------P 80

Query: 235 EAYVPRTDTYIEKESSIN-----EQIDRM-RHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
            AY  RT  +IE+ ++ N     E ++++  HS+ + ++   D +    ++        +
Sbjct: 81  SAY--RTPYHIEETNNANVVIRTEVLNQLTSHSSPKIIVAYADALTEKVITK-------K 131

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           + S   +++K+G  +    +   L    +++ D     G F + G  I+IF S  ++  +
Sbjct: 132 ALSTNTLKIKVGTELGLDFIRDMLFSYNFRQVDFVNEPGEFSIRGGIIDIF-SFADEHPY 190

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           R+SMFG+++E I  F   T   I   + IKI  N
Sbjct: 191 RISMFGDEVETIRSFDTSTQLSISTTKEIKIIPN 224



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 11/153 (7%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLT---VLTKRMAEDLTEYLYERNIRVRYMHS 614
           PVE        E + D I    Q+G +I      V T +    + + L   + R+   H 
Sbjct: 734 PVETNLIEFNEEAIRDAILYEMQRGGQIFFIHNRVQTLKEIAGMVQRLVP-DARIATGHG 792

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++   +   I+ D   G++DVL+   ++  GLD+P    + I DA   G       L Q 
Sbjct: 793 QMDGKQLEAIMLDFIDGQYDVLISTTIIESGLDVPNANTILINDAQNFGL----ADLHQM 848

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
            GR  R+ N K   Y   I   + +  +E  +R
Sbjct: 849 RGRVGRS-NRKAFCY--LIAPPVSVLTNEARKR 878


>gi|309798558|ref|ZP_07692833.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           infantis SK1302]
 gi|308117794|gb|EFO55195.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           infantis SK1302]
          Length = 525

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            G+  + + D     +   S +  IGR  R   S
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336


>gi|242051919|ref|XP_002455105.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
 gi|241927080|gb|EES00225.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
          Length = 673

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 8/125 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D+I  +   G +I++   TKRM + L   L  R      +H +    ER  ++ D R G+
Sbjct: 393 DQILRSQDPGSKIIIFCSTKRMCDQLARNL-SRQYGASAIHGDKSQSERDSVLNDFRSGR 451

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYA 690
             VLV  ++   GLDI +  +V   D     F       +  IGR  R     S    + 
Sbjct: 452 CPVLVATDVAARGLDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGRAGATGSAYTFFG 506

Query: 691 DTITK 695
           D  +K
Sbjct: 507 DQDSK 511


>gi|315499869|ref|YP_004088672.1| transcription-repair coupling factor [Asticcacaulis excentricus CB
           48]
 gi|315417881|gb|ADU14521.1| transcription-repair coupling factor [Asticcacaulis excentricus CB
           48]
          Length = 1168

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 3/112 (2%)

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           I+ +S S    +   ++    ++ LK G S+E  EL +   +  Y R      RG F V 
Sbjct: 108 ILTTSASLSQKVPPRDAMRGSLLSLKPGQSIETGELEAYFSRNGYNRVSTVSERGEFAVR 167

Query: 333 GDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
           G  I++F PS  E V  R+  FG+ +E I  F P T + ++ +  I   A S
Sbjct: 168 GGIIDVFSPSQDEPV--RLDFFGDQLESIRTFDPETQRSLKQIAAIDFMAVS 217



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 21/196 (10%)

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ----- 580
           + +SATP    L+     I E  I  T    PPV+  + RT V   +D +++        
Sbjct: 772 LTLSATPIPRTLQMALSGIREMSIIAT----PPVDRLAVRTYVLP-FDAVSIREALLREK 826

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G +    V   +   DL  +L E+   V+++  H ++   +  E++     G++DVL+
Sbjct: 827 YRGGQAYYVVPRLKDLPDLERFLREQVPEVKFIVGHGQMTPTQLEEVMTAFYDGQYDVLL 886

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLD+P    + +  AD  G       L Q  GR  R   SK   +A   T+  
Sbjct: 887 ATTIVESGLDVPTANTLIVHRADMFGL----AQLYQIRGRVGR---SKTRAFAYLTTQPH 939

Query: 698 QLAIDETTRRREKQLE 713
           Q+ + E + +R K L+
Sbjct: 940 QI-LSEASEKRLKVLQ 954


>gi|227522403|ref|ZP_03952452.1| transcription-repair coupling factor [Lactobacillus hilgardii ATCC
           8290]
 gi|227090461|gb|EEI25773.1| transcription-repair coupling factor [Lactobacillus hilgardii ATCC
           8290]
          Length = 1168

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 93/210 (44%), Gaps = 15/210 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS +T  +  +++   RP +V+      A QL S+F N    + +  F     
Sbjct: 17  QLITGISGSARTLLIDNLLKTTTRPVVVVVDTLFHADQLVSDFSNLLEDDQIFEF----- 71

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + ++ + +    R  A   L+     ++V+SVS +   + S + 
Sbjct: 72  --------PVEEMGAAELATSSPEYKAQRVLALNKLISGEPAVIVTSVSGLKRLLPSPDQ 123

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +S   + + +    + ++L   L +  Y  Q +    G F + G  +++FP + +D   R
Sbjct: 124 FSDAELTIDMDSEYDLEKLKLKLHQMGYTFQKLVAAPGDFSIRGSILDVFPLNNQDPV-R 182

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           +  F  +++ +  F     + I+ + TI+I
Sbjct: 183 IDFFDTEVDSMRLFDVSNQRSIKTINTIQI 212



 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y+H ++   +  +I+ D   G++DVLV   ++  G+DIP    + + +AD  G L
Sbjct: 845 DARIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNTLFVENADHMG-L 903

Query: 666 RSKTSLIQTIGRAAR 680
                L   IGR++R
Sbjct: 904 SQLYQLRGRIGRSSR 918


>gi|116206328|ref|XP_001228973.1| hypothetical protein CHGG_02457 [Chaetomium globosum CBS 148.51]
 gi|121789113|sp|Q2HBE7|DED1_CHAGB RecName: Full=ATP-dependent RNA helicase DED1
 gi|88183054|gb|EAQ90522.1| hypothetical protein CHGG_02457 [Chaetomium globosum CBS 148.51]
          Length = 688

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L    G   L+ V TKRMA+ L+++L  +N     +H +    ER   +   R GK  +L
Sbjct: 451 LHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALELFRNGKCPIL 510

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 511 VATAVAARGLDIPNVTHVINYDLPTD-----VDDYVHRIGRTGRAGNTGI 555


>gi|218259702|ref|ZP_03475335.1| hypothetical protein PRABACTJOHN_00994 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224948|gb|EEC97598.1| hypothetical protein PRABACTJOHN_00994 [Parabacteroides johnsonii
           DSM 18315]
          Length = 372

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 9/104 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   ++L   L      V  MHS+++  +R E++++ + G+ D+LV  +++ 
Sbjct: 192 RVIIFSSSKMKVKELASTLKRMKFNVAAMHSDLEQSQREEVMKEFKNGRIDILVATDVVS 251

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSK 685
            G+DI +  LV   D   D E +       +  IGR AR  N +
Sbjct: 252 RGIDINDIKLVINFDIPHDPEDY-------VHRIGRTARGTNGE 288


>gi|89889977|ref|ZP_01201488.1| transcription-repair coupling factor [Flavobacteria bacterium
           BBFL7]
 gi|89518250|gb|EAS20906.1| transcription-repair coupling factor [Flavobacteria bacterium
           BBFL7]
          Length = 1112

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 99/214 (46%), Gaps = 27/214 (12%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G+ GS  T   + + + +++P +++A +K  AA + ++F+     + V ++       
Sbjct: 32  LSGLQGSAFTIAASSIFDEVEKPFMIIANDKEQAAYMLNDFEKMLGDDRVLFY------- 84

Query: 233 QPEAYVPRTDTYIEKESSIN-----EQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGS 286
            P +Y  R    IEK  + N     E ++R+          +   ++V+  + ++  + +
Sbjct: 85  -PGSY--RRPYQIEKTDNANVLLRAEVLNRINS-------RKKPAVIVTYPNALFEKVVT 134

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            +   +  +++ IGD +        L + ++KR D     G F V G  +++F S   D 
Sbjct: 135 RKELEKNTLKIAIGDQISIDFANEVLFEYEFKRVDFVTEPGEFSVRGGILDVF-SFSHDE 193

Query: 347 AWRVSMFGNDIEEISEF---YPLTGQKIRNVETI 377
            +R+  FGN+I+ I  F     L+ ++I+ +  I
Sbjct: 194 PYRIEFFGNEIDTIRVFDVDTQLSKEQIKKISII 227



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 15/155 (9%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY--LYERNI---RVRYM 612
           P+E R  R   E + D ++    +G ++          E++ E   + +R++   RV   
Sbjct: 734 PIESRVIRFSEETIRDAVSYEISRGGQVFFV---HNRIENIKEVAGMIQRSVPDARVGIG 790

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H ++   +  E++     G FDVLV   ++  GLD+P    + I +A+  G     + L 
Sbjct: 791 HGQMDGKKLEELMLSFMNGDFDVLVATTIIESGLDVPNANTIFINNANNFGL----SDLH 846

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
           Q  GR  R+ N K   Y   IT    +  D+  +R
Sbjct: 847 QMRGRVGRS-NKKAFCY--FITPPYDMMTDDARKR 878


>gi|15612632|ref|NP_240935.1| transcription-repair coupling factor (TRCF) [Bacillus halodurans
           C-125]
 gi|10172681|dbj|BAB03788.1| transcription-repair coupling factor (TRCF) [Bacillus halodurans
           C-125]
          Length = 1181

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 62/318 (19%), Positives = 136/318 (42%), Gaps = 24/318 (7%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           +++G+    K QL+ G++GS +   MA + +  +RP +V+  N   A +++ +       
Sbjct: 17  IVQGLEVNMKEQLVSGLSGSARPAVMAALYKETRRPQLVITYNLYQAQKIFEDLVELVGA 76

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           + V  +             P  D    + +  + ++   R      L+     IVV  ++
Sbjct: 77  DHVLLY-------------PVNDLISSEIAIASPEMKAQRIDVLNQLVAGFSGIVVVPLA 123

Query: 280 CIYGIGSVES-YSQMIVQLKIGDSVEQKE-LLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            +  +    S + +  ++L +GD +   E L+  LV+  + R D+    G   V G  I+
Sbjct: 124 GMRRLLPPSSLWKESQIRLSVGDDIGDLESLIRRLVRNGFTRVDMVTTPGECSVRGGIID 183

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           ++P   ED   R+ +F  +I+ I  F     +   ++  + I   +  +           
Sbjct: 184 LYPLTEED-PIRIELFDTEIDSIRTFTIEDQRSKDSLSEVVIGPAAEIIMDEEHFIQGAS 242

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            +++ L   L +++K+      ++L ++I++D+  L+      S+  Y          + 
Sbjct: 243 RLEDRLSQTLKKVKKK---EVKEKLTEQISFDISELKQKHPFPSMYKYISLFY-----DD 294

Query: 458 PPTLFEYIPEDSLLFVDE 475
             +LF Y+P + ++FVDE
Sbjct: 295 TYSLFSYVPSNGVIFVDE 312



 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +RMA +++  +   + RV + H ++K  E   I+     G+ DVLV   ++  G+DIP  
Sbjct: 847 ERMANEIS--MLVPDARVSFAHGQMKESELESIMLAFLEGESDVLVTTTIIETGVDIPNV 904

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G     + L Q  GR  R+
Sbjct: 905 NTLIIHGADKMGL----SQLYQIRGRVGRS 930


>gi|327554931|gb|AEB00819.1| vasa-like protein [Marsupenaeus japonicus]
          Length = 698

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+ V  KR+A+ +  YL E+  R   MH +    +R + +   R G  ++LV   +  
Sbjct: 513 KILVFVEQKRVADFVGSYLCEKKFRATTMHGDRFQAQREQALAAFRTGVHNILVATAVAA 572

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLDI   G+V   D  KE         +  IGR  R
Sbjct: 573 RGLDIKGIGVVVNYDLPKE-----IDEYVHRIGRTGR 604


>gi|324106744|gb|ADX41681.2| vasa [Cynoglossus semilaevis]
          Length = 722

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  KR A+ +  +L + N+    +H + +  +R + + D + GK  VLV  ++  
Sbjct: 533 RTIVFVEKKRQADFIATFLCQENVPTTSIHGDREQWQREQALADFKYGKCPVLVATSVAA 592

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADT 692
            GLDIP+   V   D        S    +  IGR  R  N  + + + DT
Sbjct: 593 RGLDIPDVQHVVNFD-----LPGSIDEYVHRIGRTGRCGNVGRAVSFFDT 637


>gi|281492921|ref|YP_003354901.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis
           KF147]
 gi|281376573|gb|ADA66059.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis
           KF147]
          Length = 666

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L EY +    ++  +H ++K  E+ +I+++ +  K D+LV   ++  G+D+P   ++ I
Sbjct: 487 ELNEY-FGLFAKIGLLHGKMKNDEKDQIMQEFKAKKLDILVSTTVIEVGVDVPNATIMVI 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           +DAD+ G     + L Q  GR  R    S  IL A+
Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGTKKSYAILVAN 577


>gi|225011211|ref|ZP_03701670.1| transcription factor CarD [Flavobacteria bacterium MS024-3C]
 gi|225004625|gb|EEG42588.1| transcription factor CarD [Flavobacteria bacterium MS024-3C]
          Length = 681

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 102/255 (40%), Gaps = 29/255 (11%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF-VS 227
           K   L G+ GS  +F +  +    + P +++  +K  AA + ++ ++F   + V ++  S
Sbjct: 21  KTVYLNGLAGSALSFAITALFNESKVPFVLILEDKETAAYVLNDLESFIGEDRVLFYPAS 80

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND------CIVVSSVSCI 281
           Y   YQ                  + Q D         +L+R        CIV    +  
Sbjct: 81  YKKPYQ------------------HSQTDNANILLRAEVLQRFGKKGKPLCIVSYPEAIF 122

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   ++  +  + LK G+ +    L  SL +  +KR D     G F V G  +++F S
Sbjct: 123 EKVIQKKTLEKNTLNLKQGELISLDFLNESLFEYGFKRVDFVSSPGEFSVRGGIVDVF-S 181

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
           +  D  +R+  FG ++E I  F  ++ + I   E I I  N   VT   TL     +   
Sbjct: 182 YAYDHPYRIEFFGEEVESIRTFDIVSQRSIAKQEEISIIPN---VTQTDTLTKRQDFFSF 238

Query: 402 ELKMRLIELEKEGRL 416
             K   + + K G L
Sbjct: 239 TDKKTTVLIRKPGVL 253


>gi|307705294|ref|ZP_07642156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
 gi|307621081|gb|EFO00156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
          Length = 520

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            G+  + + D     +   S +  IGR  R   S
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336


>gi|242007840|ref|XP_002424727.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus
           corporis]
 gi|212508220|gb|EEB11989.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus
           corporis]
          Length = 449

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+++++++  V  MH +++  ER  I+R  R G   VL+  +LL  G+D+ +
Sbjct: 324 TRRKVDMLTDFMHKKDFTVSAMHGDMEQREREFIMRQFRSGSSRVLITTDLLARGIDVQQ 383

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        ++ + I  IGR+ R
Sbjct: 384 VSLVINYDLPS-----NRENYIHRIGRSGR 408


>gi|326407876|gb|ADZ64947.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. lactis
           CV56]
          Length = 666

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L EY +    ++  +H ++K  E+ +I+++ +  K D+LV   ++  G+D+P   ++ I
Sbjct: 487 ELNEY-FGLFAKIGLLHGKMKNDEKDQIMQEFKAKKLDILVSTTVIEVGVDVPNATIMVI 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           +DAD+ G     + L Q  GR  R    S  IL A+
Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGTKKSYAILVAN 577


>gi|296204692|ref|XP_002749435.1| PREDICTED: interferon-induced helicase C domain-containing protein
           1 [Callithrix jacchus]
          Length = 1025

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 10/115 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ E+I   R GK ++L+   +  EGLDI EC +V      + G + ++ +++Q  GR A
Sbjct: 770 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 823

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEV 732
           R   S  +L A + +  I+   +     REK +     H  N+ P+    KI+E+
Sbjct: 824 RADESTYVLVASSSSGVIER--ETVNDFREKMMYKAIHHVQNMEPEEYAHKILEL 876


>gi|298346962|ref|YP_003719649.1| putative DNA helicase RecG [Mobiluncus curtisii ATCC 43063]
 gi|304389327|ref|ZP_07371292.1| possible DNA helicase RecG [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298237023|gb|ADI68155.1| possible DNA helicase RecG [Mobiluncus curtisii ATCC 43063]
 gi|304327445|gb|EFL94678.1| possible DNA helicase RecG [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 816

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 6/105 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RIL TV   + A  L      R++ +   HS + +  + + + D   G+  +LV   ++ 
Sbjct: 596 RILHTV--TQTAARLAALPIFRDVPIGVAHSNLDSAAKQQAVSDFAAGRTPLLVSTTVVE 653

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+D+PE  ++ ILDAD+ G     + L Q  GR  R     V L
Sbjct: 654 VGMDVPEASMMIILDADRYGI----SQLHQLRGRIGRGSRPGVCL 694


>gi|227512317|ref|ZP_03942366.1| transcription-repair coupling factor [Lactobacillus buchneri ATCC
           11577]
 gi|227084492|gb|EEI19804.1| transcription-repair coupling factor [Lactobacillus buchneri ATCC
           11577]
          Length = 1168

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 93/210 (44%), Gaps = 15/210 (7%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS +T  +  +++   RP +V+      A QL S+F N    + +  F     
Sbjct: 17  QLITGISGSARTLLIDNLLKTTTRPVVVVVDTLFHADQLVSDFSNLLEDDQIFEF----- 71

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + ++ + +    R  A   L+     ++V+SVS +   + S + 
Sbjct: 72  --------PVEEMGAAELATSSPEYKAQRVLALNKLISGEPAVIVTSVSGLKRLLPSPDQ 123

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +S   + + +    + ++L   L +  Y  Q +    G F + G  +++FP + +D   R
Sbjct: 124 FSDAELTIDMDSEYDLEKLKLKLHQMGYTFQKLVAAPGDFSIRGSILDVFPLNNQDPV-R 182

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           +  F  +++ +  F     + I+ + TI+I
Sbjct: 183 IDFFDTEVDSMRLFDVSNQRSIKTINTIQI 212



 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y+H ++   +  +I+ D   G++DVLV   ++  G+DIP    + + +AD  G L
Sbjct: 845 DARIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNTLFVENADHMG-L 903

Query: 666 RSKTSLIQTIGRAAR 680
                L   IGR++R
Sbjct: 904 SQLYQLRGRIGRSSR 918


>gi|319947383|ref|ZP_08021615.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
           700641]
 gi|319746323|gb|EFV98584.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
           700641]
          Length = 524

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            G+  + + D     +   S +  IGR  R   S
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336


>gi|227873322|ref|ZP_03991584.1| transcription-repair coupling factor [Oribacterium sinus F0268]
 gi|227840837|gb|EEJ51205.1| transcription-repair coupling factor [Oribacterium sinus F0268]
          Length = 1138

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 7/100 (7%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+ Y H ++   E  EI+     G+ DVLV   ++  GLDIP    + I DADK G    
Sbjct: 825 RIAYAHGQMGEKELEEIMLSFIAGEIDVLVSTTIIETGLDIPNANTLIIQDADKMGL--- 881

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
            + L Q  GR  R+  +    YA  + K  +   +E+ +R
Sbjct: 882 -SQLYQIRGRVGRSNRTS---YAFLLYKKGKSLTEESEKR 917



 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 70/151 (46%), Gaps = 2/151 (1%)

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQMIVQL 297
           P  D    K  +    I R R    R L+E  + ++V+++ + +  +    ++ Q +  +
Sbjct: 88  PAKDYLFYKADTRGNYISRERSECLRQLVEEEEGMLVTTLPAMLEKLEGKNAFRQAVFTV 147

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           ++G ++  + L  SL    Y+R D    RG + + G  +++F + +E+   R+  F +++
Sbjct: 148 QLGQTLSLESLQDSLHSLGYQRVDQVESRGEYSLRGGILDVFSNQMEE-PLRIEFFDDEV 206

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           + +  F   + + +  VE   IY  S    P
Sbjct: 207 DSLRYFSLESQRSLEQVEEANIYPVSEQGKP 237


>gi|148224339|ref|NP_001082033.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Xenopus laevis]
 gi|10764780|gb|AAG22818.1|AF302422_1 RNA helicase II/Gu [Xenopus laevis]
          Length = 800

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   +K  A +L+          + +H +++  ER  +++  R G F+VL+  N+  
Sbjct: 475 KTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLKGFRQGTFEVLIATNVAA 534

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            GLDIPE  LV +  A KE       + +   GR  R   + V +
Sbjct: 535 RGLDIPEVDLVVLYSAPKEA-----DAYVHRSGRTGRAGRTGVCI 574


>gi|327471614|gb|EGF17057.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK408]
          Length = 1167

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 14/227 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E  ++  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKNSR-QLIMGLSASTKAITIAAGLEESEK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F++  D    E      +    +  ++N  ID  +     + +  +  
Sbjct: 71  LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNVAASKL 129

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++  S+           +    + L +G   +   L+  L +  YK+    + +G + + 
Sbjct: 130 LLPDSID----------FKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYSLR 179

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I
Sbjct: 180 GDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIDNIESILI 225



 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           + + Y+H ++  +     + D   G++D+LV   ++  G+DIP    + + +AD  G   
Sbjct: 851 VSIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL-- 908

Query: 667 SKTSLIQTIGRAARNVNSKVILYA 690
             ++L Q  GR  R   S  I YA
Sbjct: 909 --STLYQLRGRVGR---SNRIAYA 927


>gi|327467732|gb|EGF13226.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK330]
          Length = 1167

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 14/227 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E  ++  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEESEK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F++  D    E      +    +  ++N  ID  +     + +  +  
Sbjct: 71  LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNVAASKL 129

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++  S+           +    + L +G   +   L+  L +  YK+    + +G + + 
Sbjct: 130 LLPDSID----------FKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYSLR 179

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I
Sbjct: 180 GDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIENIESILI 225



 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  +     + D   G++D+LV   ++  G+DIP    + + +AD  G     
Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL---- 908

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 909 STLYQLRGRVGR---SNRIAYA 927


>gi|297572061|ref|YP_003697835.1| transcription-repair coupling factor [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296932408|gb|ADH93216.1| transcription-repair coupling factor [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 1168

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           V +KIGD+++  ++   LV   Y R D+   RG F V G  ++IFP   E    R+ +FG
Sbjct: 140 VVIKIGDTIDIADVQERLVAHAYTRVDMVETRGEFAVRGGILDIFPP-TEAHPMRIELFG 198

Query: 355 NDIEEISEF 363
           +++++I  F
Sbjct: 199 DEVDDIRSF 207


>gi|294940572|ref|XP_002782818.1| helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239894861|gb|EER14614.1| helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 167

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 2/114 (1%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G RI++   TK+ A+ LT  +   N     +H + +  ER  I+ D + G+ +VLV  +
Sbjct: 3   KGSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILNDFKTGRCNVLVATD 62

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           + + GLDI     V   D  K   +      I   GRA    NS   +  DT T
Sbjct: 63  VAQRGLDIKNVEWVVNYDMPKT--IEDYVHRIGRTGRAGAVGNSLTFITNDTHT 114


>gi|125625276|ref|YP_001033759.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124494084|emb|CAL99085.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300072086|gb|ADJ61486.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 666

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           ++  +H ++K  E+ +I+++ +  K DVLV   ++  G+D+P   ++ I+DAD+ G    
Sbjct: 497 KIGLLHGKMKNDEKDQIMQEFKAKKLDVLVSTTVIEVGVDVPNATIMVIMDADRFGL--- 553

Query: 668 KTSLIQTIGRAARNV-NSKVILYAD 691
            + L Q  GR  R    S  IL A+
Sbjct: 554 -SQLHQLRGRVGRGTKKSYAILVAN 577


>gi|50309425|ref|XP_454720.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643855|emb|CAG99807.1| KLLA0E17095p [Kluyveromyces lactis]
          Length = 690

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           LL  +     + L +      I  +Y+  + +T ER  I+ D + GK  VL+   +  EG
Sbjct: 299 LLFAVDVAHCKTLFQTFQNAGINAQYVTGKTRTGERDSIVSDFKNGKIQVLMNCGIFTEG 358

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            DIP    V +    K     S++ L+Q IGR  R  +SK
Sbjct: 359 TDIPNVDCVLLCRPTK-----SRSLLVQMIGRGLRKHHSK 393


>gi|332363612|gb|EGJ41393.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK1059]
          Length = 1167

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 14/227 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E   +  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKNSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F++  D    E      +    +  ++N  ID  +     + +  +  
Sbjct: 71  LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNVAASKL 129

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++  S+           +    + L +G   +   L+  L +  YK+    + +G + + 
Sbjct: 130 LLPDSID----------FKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYSLR 179

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I
Sbjct: 180 GDLLDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIENIESILI 225



 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  +     + D   G++D+LV   ++  G+DIP    + + +AD  G     
Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL---- 908

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 909 STLYQLRGRVGR---SNRIAYA 927


>gi|239988002|ref|ZP_04708666.1| ATP-dependent helicase [Streptomyces roseosporus NRRL 11379]
          Length = 1045

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           AR  V+ V D+I       +R L   ++   A  + ++     +    +  E    ER  
Sbjct: 543 ARLVVQAVKDKIT--DPDSMRALGFCVSVAHAHFMADFFRRAGLNAVALSGETPAHERKA 600

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            + DLR G   V+  ++L  EGLDIP+   + +L         S T  +Q +GR  R   
Sbjct: 601 ALDDLRSGALQVIFSVDLFNEGLDIPDVDTLLLLRPTS-----SATVFLQQLGRGLRRTE 655

Query: 684 SKVIL 688
            K +L
Sbjct: 656 DKAVL 660


>gi|223056271|gb|ACM80368.1| vasa [Lytechinus variegatus]
          Length = 679

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TKR A+ L   L + +     +H + +  ER E +RD ++G+  VLV  ++  
Sbjct: 484 RTLVFVETKRNADFLATLLSQSDFHATSIHGDRQQQEREEALRDFKIGRAPVLVATSVAA 543

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDIP+   V   D   +         +  IGR  R  N+
Sbjct: 544 RGLDIPKVKHVVNYDLPSD-----IDEYVHRIGRTGRVGNT 579


>gi|170083899|ref|XP_001873173.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650725|gb|EDR14965.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 635

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LT+   +  +  RY+H+     ER  ++   + G F VLV   +L EG DIP    V I 
Sbjct: 300 LTQSFRQFGVDARYLHAGTPIAERKALVAMFKAGHFPVLVNCAILTEGADIPNIDCVLIA 359

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
                   RS+    Q IGR  R
Sbjct: 360 RPT-----RSRNVFAQMIGRGMR 377


>gi|149194843|ref|ZP_01871937.1| transcription-repair coupling factor [Caminibacter mediatlanticus
           TB-2]
 gi|149135002|gb|EDM23484.1| transcription-repair coupling factor [Caminibacter mediatlanticus
           TB-2]
          Length = 981

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 2/109 (1%)

Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
           +   +S  S I     V+ Y + I  L  GDS++ +E+  + +   Y+R DI   +G   
Sbjct: 73  NAYFISPYSTIMKKLPVKKYYKSI-DLNFGDSIDLEEIKKTFILWGYERVDIVSEKGEVS 131

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             GD ++I+P + +    R+S+F  +IE I EF   T + I  +E+IKI
Sbjct: 132 FRGDILDIWPINTKK-PIRISLFDIEIESIREFDETTQKSIDEIESIKI 179


>gi|121998486|ref|YP_001003273.1| DEAD/DEAH box helicase domain-containing protein [Halorhodospira
           halophila SL1]
 gi|121589891|gb|ABM62471.1| DEAD/DEAH box helicase domain protein [Halorhodospira halophila
           SL1]
          Length = 808

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 16/135 (11%)

Query: 554 LVDPPVEIR-SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------R 605
           ++DP + IR SAR+Q   +     LA + GL+ +L   ++ M E LT+YL +       R
Sbjct: 271 VIDPDLGIRASARSQTTRI---ARLAVRSGLKAILFARSRLMVEVLTKYLKDVFDRDPRR 327

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
             RV          ER E  R LR G  D +V  + L  G+DI     VA+L+    G+ 
Sbjct: 328 PPRVAAYRGGYLPAERRETERALRGGGVDCVVATSALELGVDIGSLD-VAVLN----GYP 382

Query: 666 RSKTSLIQTIGRAAR 680
            +     Q +GRA R
Sbjct: 383 GTIAGTWQRLGRAGR 397


>gi|302560241|ref|ZP_07312583.1| transcription-repair coupling factor [Streptomyces griseoflavus
           Tu4000]
 gi|302477859|gb|EFL40952.1| transcription-repair coupling factor [Streptomyces griseoflavus
           Tu4000]
          Length = 1187

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 22/215 (10%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           + + FT+A +     RP + +      A  L +  ++  P   V  + S+ +    E   
Sbjct: 48  AARPFTVAALARDTGRPVLAVTATGREAEDLAAALRSLLPPEGVVEYPSW-ETLPHERLS 106

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQM 293
           PR+DT   + + +     R+ H            +VV+ V  +      G+G +E     
Sbjct: 107 PRSDTVGRRLAVLR----RLAHPRPDDPETGPVSVVVAPVRSVLQPQVKGLGDLEP---- 158

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            V L+ G + +    + +L    Y R ++   RG F V G  +++FP   E+   RV  +
Sbjct: 159 -VSLRTGGTADLGATVEALAAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRVEFW 216

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           G+D+EEI  F      K+ +  ++++  +  +  P
Sbjct: 217 GDDVEEIRYF------KVADQRSLEVAEHGLWAPP 245


>gi|183601453|ref|ZP_02962823.1| transcription-repair coupling factor [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|241191047|ref|YP_002968441.1| transcription-repair coupling factor [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196453|ref|YP_002970008.1| transcription-repair coupling factor [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183219059|gb|EDT89700.1| transcription-repair coupling factor [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|240249439|gb|ACS46379.1| transcription-repair coupling factor [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240251007|gb|ACS47946.1| transcription-repair coupling factor [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|295794036|gb|ADG33571.1| transcription-repair coupling factor [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 1194

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 26/197 (13%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF-VSYYDYYQPEAYVPRTDTYIEKES 249
           A ++P +++ P+   A  L  + ++++  +  E   +  ++    E   PR DT   +  
Sbjct: 75  ADRKPVVIVVPSGREAEDLVGDLRSWYDGDPNEVAQLMAWETLPHERLSPRADTVANR-- 132

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSV-----SCIYGIGSVES--YSQMIVQLKIGDS 302
              E   R+ H  + S +     I+V  V       + GIG V+   ++Q       G+ 
Sbjct: 133 --METFYRLCHPQSDSEMFGPIRILVMPVRSLIQPVVAGIGDVKPLVFAQ-------GEE 183

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEIS 361
           +  ++ +  LV+  Y R D+ + RG F V G  I++F P+    V  R+  FG++I+ I 
Sbjct: 184 ITLEDAVQGLVRNSYTRVDLVMDRGEFAVRGGIIDVFVPTEPHPV--RIEFFGDEIDTIR 241

Query: 362 EFYP----LTGQKIRNV 374
            F+       G+ IR+V
Sbjct: 242 RFHSSDQRTYGEPIRSV 258


>gi|116328533|ref|YP_798253.1| transcription-repair coupling factor [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331261|ref|YP_800979.1| transcription-repair coupling factor [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121277|gb|ABJ79320.1| Transcription-repair coupling factor [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124950|gb|ABJ76221.1| Transcription-repair coupling factor [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 1176

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 15/193 (7%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           VT    +   + + + + R  +V++ N   A  L+ E  +F   + +             
Sbjct: 62  VTEGSHSILASSLFQKLNRTIVVVSENNTAAEFLFREALSFISASDL------------- 108

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMI 294
            Y+P  +    +      ++ R R  A   +L     ++ +SV+  +  +  V++     
Sbjct: 109 VYLPGQEVLPYEYLRYPSEMKRERIKAIGKILNGGPSLIFTSVAGFLKTLPPVQTMQGRA 168

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L+ G  ++ + LL  L+   YKR D+    G F + G  ++I+ S+ ++   R+ +FG
Sbjct: 169 ITLEKGKEIDLESLLIQLIDLGYKRTDVCETFGEFSLKGGILDIYSSYSQE-PVRIDLFG 227

Query: 355 NDIEEISEFYPLT 367
            +IE I  F P T
Sbjct: 228 EEIESIRTFDPDT 240


>gi|80477520|gb|AAI08449.1| LOC398188 protein [Xenopus laevis]
          Length = 768

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   +K  A +L+          + +H +++  ER  +++  R G F+VL+  N+  
Sbjct: 443 KTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLKGFRQGTFEVLIATNVAA 502

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            GLDIPE  LV +  A KE       + +   GR  R   + V +
Sbjct: 503 RGLDIPEVDLVVLYSAPKEA-----DAYVHRSGRTGRAGRTGVCI 542


>gi|319938761|ref|ZP_08013125.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
           1_2_62CV]
 gi|319811811|gb|EFW08077.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
           1_2_62CV]
          Length = 565

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 295 TKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 352

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 353 SGVTHVYNYD---IPQDPESYVHRIGRTGR 379


>gi|304434516|dbj|BAJ15435.1| VASA-like gene [Mytilus galloprovincialis]
          Length = 745

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+ V  KR A+ L  YL +       +H +    ER E +RD + G+  +LV  ++  
Sbjct: 551 KTLVFVEQKRNADFLATYLSQSGFPTTSIHGDRLQQEREEALRDFKTGRAPILVATSVAA 610

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSIQLAI 701
            GLDIP    V   D       +S    +  IGR  R  NV      Y D     I  A+
Sbjct: 611 RGLDIPLVKHVINYD-----LPQSIDEYVHRIGRTGRCGNVGKSTSFYTDDSDGGIAKAL 665


>gi|289167533|ref|YP_003445802.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
           DEAD-box family [Streptococcus mitis B6]
 gi|288907100|emb|CBJ21934.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
           DEAD-box family [Streptococcus mitis B6]
          Length = 521

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            G+  + + D     +   S +  IGR  R   S
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336


>gi|228989414|ref|ZP_04149403.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
           DSM 12442]
 gi|228770361|gb|EEM18936.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
           DSM 12442]
          Length = 528

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 6/119 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRR 708
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I++TT+R+
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIEQTTKRK 362


>gi|228995609|ref|ZP_04155275.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
           Rock3-17]
 gi|228764181|gb|EEM13062.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
           Rock3-17]
          Length = 536

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 6/119 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRR 708
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I++TT+R+
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIEQTTKRK 362


>gi|114794876|pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
           A Resolution
 gi|114794877|pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
           A Resolution
 gi|116668327|pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
           A Resolution
          Length = 410

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 269 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 323

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 324 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 369


>gi|20149756|ref|NP_619610.1| eukaryotic initiation factor 4A-III [Mus musculus]
 gi|42560197|sp|Q91VC3|IF4A3_MOUSE RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|14198152|gb|AAH08132.1| Eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|15277517|gb|AAH12862.1| Eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|74138617|dbj|BAE27130.1| unnamed protein product [Mus musculus]
 gi|74142343|dbj|BAE31931.1| unnamed protein product [Mus musculus]
 gi|74146845|dbj|BAE41387.1| unnamed protein product [Mus musculus]
 gi|74186129|dbj|BAE34233.1| unnamed protein product [Mus musculus]
 gi|74188979|dbj|BAE39256.1| unnamed protein product [Mus musculus]
 gi|74212198|dbj|BAE40258.1| unnamed protein product [Mus musculus]
 gi|74214032|dbj|BAE29433.1| unnamed protein product [Mus musculus]
 gi|74220630|dbj|BAE31525.1| unnamed protein product [Mus musculus]
 gi|122889626|emb|CAM14996.1| eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|123264877|emb|CAM18884.1| eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|148702746|gb|EDL34693.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48 [Mus musculus]
          Length = 411

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370


>gi|322377346|ref|ZP_08051837.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M334]
 gi|321281546|gb|EFX58555.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M334]
          Length = 524

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            G+  + + D     +   S +  IGR  R   S
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336


>gi|282866318|ref|ZP_06275364.1| transcription-repair coupling factor [Streptomyces sp. ACTE]
 gi|282558904|gb|EFB64460.1| transcription-repair coupling factor [Streptomyces sp. ACTE]
          Length = 1176

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 100/238 (42%), Gaps = 22/238 (9%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           A+A+ +K      +  + L    + + F +A +     R  + +      A  L +  + 
Sbjct: 15  ALAEAVKAATDGHRSHVDLVGPPAARPFAVAALAREAGRTVLAVTATGREAEDLAAALRT 74

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
             P + +  F S+ +    E   PR+DT   + + +     R+ H            +VV
Sbjct: 75  LLPPDTIAEFPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPRADDPETGPVGVVV 129

Query: 276 SSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
           + +  +      G+G +E      V L  G + +  E++ +L    Y R ++   RG F 
Sbjct: 130 APIRSVLQPQVKGLGDLEP-----VALSSGQTADLGEVVDALAAAAYARVELVEKRGEFA 184

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           V G  +++FP   E+   RV  +G+D+EEI  F      K+ +  ++++ A+  +  P
Sbjct: 185 VRGGILDVFPP-TEEHPLRVEFWGDDVEEIRYF------KVADQRSLEVAAHGLWAPP 235


>gi|258648442|ref|ZP_05735911.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           tannerae ATCC 51259]
 gi|260851194|gb|EEX71063.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           tannerae ATCC 51259]
          Length = 484

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            A Q+  R+++   +K+  ++L   L  +   V  MHS+++  +R E++   + G+ D+L
Sbjct: 245 FADQKPERVIIFCGSKQKVKELNITLKRKGYNVEAMHSDLEQKQRDEVMLGFKAGRIDIL 304

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  +++  G+DI +  LV   D       R     +  IGR AR
Sbjct: 305 VATDIVARGIDIDDITLVINYDVP-----RDAEDYVHRIGRTAR 343


>gi|324991860|gb|EGC23783.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK405]
 gi|324996250|gb|EGC28160.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK678]
 gi|325698026|gb|EGD39907.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK160]
 gi|327458484|gb|EGF04834.1| transcription-repair coupling factor [Streptococcus sanguinis SK1]
 gi|327490344|gb|EGF22131.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK1058]
          Length = 1167

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 14/227 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E  ++  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKNSR-QLIMGLSASTKAITIAAGLEESEK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F++  D    E      +    +  ++N  ID  +     + +  +  
Sbjct: 71  LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNVAASKL 129

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++  S+           +    + L +G   +   L+  L +  YK+    + +G + + 
Sbjct: 130 LLPDSID----------FKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYSLR 179

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I
Sbjct: 180 GDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIDNIESILI 225



 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           + + Y+H ++  +     + D   G++D+LV   ++  G+DIP    + + +AD  G   
Sbjct: 851 VSIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL-- 908

Query: 667 SKTSLIQTIGRAARNVNSKVILYA 690
             ++L Q  GR  R   S  I YA
Sbjct: 909 --STLYQLRGRVGR---SNRIAYA 927


>gi|195452372|ref|XP_002073325.1| GK14071 [Drosophila willistoni]
 gi|194169410|gb|EDW84311.1| GK14071 [Drosophila willistoni]
          Length = 802

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R  R G   +LV   +   G
Sbjct: 564 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 623

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 624 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 667


>gi|308322209|gb|ADO28242.1| eukaryotic initiation factor 4a-iii [Ictalurus furcatus]
          Length = 406

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 265 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 319

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 320 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 365


>gi|254423305|ref|ZP_05037023.1| primosomal protein N', putative [Synechococcus sp. PCC 7335]
 gi|196190794|gb|EDX85758.1| primosomal protein N', putative [Synechococcus sp. PCC 7335]
          Length = 889

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 18/154 (11%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+R+  DL +YL + + IR     +  K   R  + R  R G+ ++LVG  +L +G+D+P
Sbjct: 614 TQRVVNDLAKYLPQIKCIRFDSDTTRNKGAHRALLARFAR-GEANLLVGTQMLTKGIDLP 672

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARNVN-SKVILYADTITKSIQLAI 701
           +  LV ++ AD   F+       R+  +L Q  GRA R     +VI+   +   ++  A+
Sbjct: 673 QVVLVGVIAADGLLFMPDFRASERAYQTLTQVAGRAGRGEQPGRVIVQTYSPENAVIQAL 732

Query: 702 DETTRRREK-----QLEHN---KKHNINPQSVKE 727
             ++   E+     QLE     K+  I PQ + +
Sbjct: 733 RGSSTEDEQGISMPQLEKKPMAKQQAIKPQMIDQ 766


>gi|322389137|ref|ZP_08062700.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           903]
 gi|321144179|gb|EFX39594.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           903]
          Length = 523

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|319902155|ref|YP_004161883.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
 gi|319417186|gb|ADV44297.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
          Length = 415

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 10/116 (8%)

Query: 576 NLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           NL A+Q   R+++   +K   +++T+ L +  + V  MHS+++  +R +++ + + G+ +
Sbjct: 237 NLFAEQTPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREDVMYEFKAGRIN 296

Query: 635 VLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +LV  +++  G+DI +  LV   D   D E +       +  IGR AR  N  V L
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAL 345


>gi|229101040|ref|ZP_04231822.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-28]
 gi|228682378|gb|EEL36473.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-28]
          Length = 374

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 94  TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 151

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 152 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 208

Query: 710 KQLE 713
            ++E
Sbjct: 209 DRME 212


>gi|26344810|dbj|BAC36054.1| unnamed protein product [Mus musculus]
          Length = 411

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370


>gi|42525018|ref|NP_970398.1| putative ATP-dependent helicase [Bdellovibrio bacteriovorus HD100]
 gi|39577229|emb|CAE81052.1| putative ATP-dependent helicase [Bdellovibrio bacteriovorus HD100]
          Length = 580

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 9/101 (8%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +QG+ I  +  T + AE++  YL     RV +  +++K  ER +II D +  KF  LV +
Sbjct: 252 RQGVMIFAS--TIKHAEEIMTYLPTDQARVVFGDTDIK--ERAQIIHDFKQKKFKYLVNV 307

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++L  G D P   ++AIL   +   L       Q +GR  R
Sbjct: 308 SVLTTGFDAPHVDVIAILRPTESNSLYQ-----QIVGRGLR 343


>gi|116668333|pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
           A Resolution
          Length = 374

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 233 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 287

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 288 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 333


>gi|321459317|gb|EFX70372.1| hypothetical protein DAPPUDRAFT_328137 [Daphnia pulex]
          Length = 738

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L E+LY     V  +H +    ER + ++  R GK  +LV   +   G
Sbjct: 498 LVFVETKRGADALEEFLYRDGYPVTSIHGDRSQREREDALKRFRSGKTPILVATAVAARG 557

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 558 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 601


>gi|300361942|ref|ZP_07058119.1| DNA helicase RecG [Lactobacillus gasseri JV-V03]
 gi|300354561|gb|EFJ70432.1| DNA helicase RecG [Lactobacillus gasseri JV-V03]
          Length = 679

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 14/135 (10%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRI-LLTVLTK-------RMAEDLTEYL--YERN 606
           P V   +  +++++V + + L   +G +I ++T L         + AEDL   L  Y ++
Sbjct: 442 PVVSSWATSSKLKEVLELMRLQLDKGFQIYVVTPLISESEKSDLKNAEDLQARLAHYFKD 501

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
             V  +H ++K  ++ EI+     GK D+LV  +++  G+D+P   ++ I +AD+ G   
Sbjct: 502 ENVVLLHGQMKGNQKNEIMDSFAAGKIDILVTTSVIEVGVDVPNANMMVIFNADRFGL-- 559

Query: 667 SKTSLIQTIGRAARN 681
             + L Q  GR  R 
Sbjct: 560 --SQLHQLRGRIGRG 572


>gi|163938237|ref|YP_001643121.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229131241|ref|ZP_04260147.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST196]
 gi|163860434|gb|ABY41493.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
 gi|228652232|gb|EEL08163.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST196]
          Length = 538

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 363

Query: 710 KQLE 713
            ++E
Sbjct: 364 DRME 367


>gi|296394094|ref|YP_003658978.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296181241|gb|ADG98147.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
           44985]
          Length = 548

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 71/174 (40%), Gaps = 21/174 (12%)

Query: 549 IRPTGLVDP-PVEIRSARTQVEDVYDEINLAAQQGLRILLT--------------VLTKR 593
           I  T L DP  V +++A T  E++     L A      LLT              V TK+
Sbjct: 200 ISKTYLRDPVEVTVKAATTTSENIEQRYTLVAHHRKLDLLTRILEVEQFSAMIVFVRTKQ 259

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             ED+ E L  R    R ++ ++    R   +  LR GK D+LV  ++   GLD+     
Sbjct: 260 ATEDIAERLRARGFAARPLNGDIAQAARERTVSALRAGKIDILVATDVAARGLDVERITH 319

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDETTR 706
           V   D   +       S +  IGR  R   + V  L+     +S+  AI+  TR
Sbjct: 320 VFNYDVPHD-----TESYVHRIGRTGRAGRAGVSYLFVTPRERSMIGAIERATR 368


>gi|224046936|ref|XP_002196956.1| PREDICTED: putative DEAD box polypeptide 48 [Taeniopygia guttata]
          Length = 341

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 200 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 254

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 255 SGASRVLISTDVWARGLDVPQVSLIINYDLPN-----NRELYIHRIGRSGR 300


>gi|225684610|gb|EEH22894.1| dicer [Paracoccidioides brasiliensis Pb03]
          Length = 1415

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 6/68 (8%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DLR GK ++L+  ++L EG+D+  C LV   DA     +++  S IQ  GR AR   S
Sbjct: 459 IDDLRSGKKNLLIATSVLEEGIDVSACHLVVCFDA-----IKNLRSFIQRRGR-ARKERS 512

Query: 685 KVILYADT 692
           K +++ D+
Sbjct: 513 KFVMFLDS 520


>gi|84386598|ref|ZP_00989624.1| transcription-repair coupling factor [Vibrio splendidus 12B01]
 gi|84378404|gb|EAP95261.1| transcription-repair coupling factor [Vibrio splendidus 12B01]
          Length = 1153

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 99/228 (43%), Gaps = 19/228 (8%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           LKG   ++ +  L+G   S     +A++ E      ++  P+  +A +L SE + F  H 
Sbjct: 12  LKGAGDKKHIGNLVG---SSLALAIARLAEQHNSHTLLAVPDPQIALKLQSEIEQFTSHE 68

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
                V+ +  ++   Y    D++   +  I+++I R+      +L    D I +  +S 
Sbjct: 69  -----VALFPDWETLPY----DSFSPHQEIISDRIARLY-----ALPTLKDGITIVPIST 114

Query: 281 IYGIGSVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
           +    S   +  Q  + +K GD    ++L   L K  Y+  D     G +   G  +++F
Sbjct: 115 LLQRQSPRDFLLQHTLMVKTGDLYSLEKLRLQLEKSGYRYVDQVFGPGEYASRGSILDLF 174

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
           P   +D  +R+  F ++I+ I  F P   + I ++  I++     + T
Sbjct: 175 PMGSKD-PYRIDFFDDEIDTIRTFDPENQRSIEDISEIRLLPAHEFPT 221


>gi|256840789|ref|ZP_05546297.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
 gi|298376614|ref|ZP_06986569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
 gi|301309869|ref|ZP_07215808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
 gi|256738061|gb|EEU51387.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
 gi|298266492|gb|EFI08150.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
 gi|300831443|gb|EFK62074.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
          Length = 426

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 9/104 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   ++L   L      V  MHS+++  +R E++++ + G  D+LV  +++ 
Sbjct: 247 RVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVA 306

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSK 685
            G+DI +  LV   D   D E +       +  IGR AR  N +
Sbjct: 307 RGIDINDIKLVVNFDIPHDPEDY-------VHRIGRTARGTNGE 343


>gi|195395963|ref|XP_002056603.1| GJ11034 [Drosophila virilis]
 gi|194143312|gb|EDW59715.1| GJ11034 [Drosophila virilis]
          Length = 817

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R  R G   +LV   +   G
Sbjct: 572 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 631

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D   D E ++    +T  +  +G A    N K
Sbjct: 632 LDIPHVTHVINFDLPTDVEEYVHRIGRTGRMGNLGVATSFFNDK 675


>gi|114051321|ref|NP_001039653.1| eukaryotic initiation factor 4A-III [Bos taurus]
 gi|154147644|ref|NP_001093663.1| eukaryotic initiation factor 4A-III [Sus scrofa]
 gi|157821621|ref|NP_001093628.1| eukaryotic initiation factor 4A-III [Rattus norvegicus]
 gi|126308661|ref|XP_001370945.1| PREDICTED: similar to Chain C, Structure Of The Human Exon Junction
           Complex With A Trapped Dead-Box Helicase Bound To Rna
           [Monodelphis domestica]
 gi|109825494|sp|Q2NL22|IF4A3_BOVIN RecName: Full=Eukaryotic initiation factor 4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|123780398|sp|Q3B8Q2|IF4A3_RAT RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|251764755|sp|A6M931|IF4A3_PIG RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|77748037|gb|AAI05876.1| Eukaryotic translation initiation factor 4A, isoform 3 [Rattus
           norvegicus]
 gi|84708898|gb|AAI11185.1| Eukaryotic translation initiation factor 4A, isoform 3 [Bos taurus]
 gi|85792296|gb|ABC84196.1| eukaryotic translation initiation factor 4A isoform 3 [Sus scrofa]
 gi|149054966|gb|EDM06783.1| rCG33565, isoform CRA_a [Rattus norvegicus]
 gi|296476097|gb|DAA18212.1| eukaryotic initiation factor 4A-III [Bos taurus]
          Length = 411

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370


>gi|126274138|ref|XP_001387431.1| RNA helicase involved in maturation of 18S rRNA [Scheffersomyces
           stipitis CBS 6054]
 gi|146286171|sp|A3GFV3|FAL1_PICST RecName: Full=ATP-dependent RNA helicase FAL1
 gi|126213301|gb|EAZ63408.1| RNA helicase involved in maturation of 18S rRNA [Pichia stipitis
           CBS 6054]
          Length = 399

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD  NL   Q +   +   TK     LT+ + ++N  V  MH ++K  ER  I+ D R
Sbjct: 258 DLYD--NLTITQAV---IFCNTKLKVNWLTDQMRKQNFTVVSMHGDMKQDERDSIMNDFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D   DKE +       I  IGR+ R
Sbjct: 313 TGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENY-------IHRIGRSGR 358


>gi|73620773|sp|Q4R3Q1|IF4A3_MACFA RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|67971846|dbj|BAE02265.1| unnamed protein product [Macaca fascicularis]
          Length = 411

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370


>gi|7661920|ref|NP_055555.1| eukaryotic initiation factor 4A-III [Homo sapiens]
 gi|109118862|ref|XP_001110130.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Macaca
           mulatta]
 gi|297701955|ref|XP_002827960.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Pongo abelii]
 gi|332263899|ref|XP_003280987.1| PREDICTED: eukaryotic initiation factor 4A-III [Nomascus
           leucogenys]
 gi|20532400|sp|P38919|IF4A3_HUMAN RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           initiation factor 4A-like NUK-34; AltName:
           Full=Eukaryotic translation initiation factor 4A isoform
           3; AltName: Full=Nuclear matrix protein 265; Short=NMP
           265; Short=hNMP 265
 gi|295982193|pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
           Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
           Machinery
 gi|295982194|pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
           Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
           Machinery
 gi|13177790|gb|AAH03662.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|13325146|gb|AAH04386.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|15029856|gb|AAH11151.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|48145617|emb|CAG33031.1| DDX48 [Homo sapiens]
 gi|60655857|gb|AAX32492.1| DEAD-box polypeptide 48 [synthetic construct]
 gi|119609990|gb|EAW89584.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, isoform CRA_a [Homo
           sapiens]
 gi|119609991|gb|EAW89585.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, isoform CRA_a [Homo
           sapiens]
 gi|158254648|dbj|BAF83297.1| unnamed protein product [Homo sapiens]
 gi|168274374|dbj|BAG09607.1| eukaryotic initiation factor 4A-III [synthetic construct]
          Length = 411

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370


>gi|332072754|gb|EGI83235.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17545]
          Length = 524

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            G+  + + D     +   S +  IGR  R   S
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336


>gi|320166584|gb|EFW43483.1| Ddx52 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 256

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 9/104 (8%)

Query: 580 QQGLR--ILLTVLTKRMAEDL-TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           Q+G+R  IL+ V +   A+ L  E LYE+ + V  +H+E  +LER   I++ R GK   L
Sbjct: 28  QKGVRPPILVFVQSVDRAKQLHREMLYEK-MNVDVIHAERTSLERETAIKNFRTGKTWFL 86

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +   LL  G+D     LV   D     F ++  S I  IGR  R
Sbjct: 87  IATELLARGMDFKGVNLVINFD-----FPQTAESYIHRIGRTGR 125


>gi|229171082|ref|ZP_04298680.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
 gi|228612412|gb|EEK69636.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
          Length = 530

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 363

Query: 710 KQLE 713
            ++E
Sbjct: 364 DRME 367


>gi|229028084|ref|ZP_04184235.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
 gi|228733237|gb|EEL84068.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
          Length = 527

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 363

Query: 710 KQLE 713
            ++E
Sbjct: 364 DRME 367


>gi|229074285|ref|ZP_04207329.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
 gi|229094946|ref|ZP_04225949.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
 gi|229113900|ref|ZP_04243333.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
 gi|228669561|gb|EEL24970.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
 gi|228688479|gb|EEL42354.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
 gi|228708837|gb|EEL60966.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
          Length = 529

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 363

Query: 710 KQLE 713
            ++E
Sbjct: 364 DRME 367


>gi|73964736|ref|XP_533130.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 48
           isoform 1 [Canis familiaris]
          Length = 411

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370


>gi|323306983|gb|EGA60267.1| Dbp1p [Saccharomyces cerevisiae FostersO]
          Length = 452

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L+A+     L+ V TKRMA+ LT++L  +N +   +H +    ER   +   +    D+L
Sbjct: 241 LSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADIL 300

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D   +         +  IGR  R  N+ V
Sbjct: 301 VATAVAARGLDIPNVTHVINYDLPSD-----IDDYVHRIGRTGRAGNTGV 345


>gi|320580361|gb|EFW94584.1| eukaryotic initiation factor 4A [Pichia angusta DL-1]
          Length = 381

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD I++      + ++   T+R  E LT+ L E N  V  +HS++   +R  I+ + R
Sbjct: 239 DLYDSISVT-----QAVIFCNTRRKVETLTQQLTENNFTVSAIHSDLSQQDRDTIMNEFR 293

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   +L+  +LL  G+D+ +  LV   D  ++KE ++
Sbjct: 294 TGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYI 331


>gi|255013264|ref|ZP_05285390.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_7]
          Length = 426

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 9/104 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   ++L   L      V  MHS+++  +R E++++ + G  D+LV  +++ 
Sbjct: 247 RVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVA 306

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSK 685
            G+DI +  LV   D   D E +       +  IGR AR  N +
Sbjct: 307 RGIDINDIKLVVNFDIPHDPEDY-------VHRIGRTARGTNGE 343


>gi|189465693|ref|ZP_03014478.1| hypothetical protein BACINT_02054 [Bacteroides intestinalis DSM
           17393]
 gi|189433957|gb|EDV02942.1| hypothetical protein BACINT_02054 [Bacteroides intestinalis DSM
           17393]
          Length = 428

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 9/114 (7%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            A Q   R+++   +K   +++T+ L    + V  MHS+++  +R E++ + + G+ ++L
Sbjct: 239 FAEQTPERVIIFASSKLKVKEVTKALKMMKLNVGEMHSDLEQAQREEVMHEFKAGRVNIL 298

Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  +++  G+DI +  LV   D   D E +       +  IGR AR  N  V L
Sbjct: 299 VATDIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAL 345


>gi|150008034|ref|YP_001302777.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
 gi|149936458|gb|ABR43155.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
          Length = 426

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 9/104 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   ++L   L      V  MHS+++  +R E++++ + G  D+LV  +++ 
Sbjct: 247 RVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVA 306

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSK 685
            G+DI +  LV   D   D E +       +  IGR AR  N +
Sbjct: 307 RGIDINDIKLVVNFDIPHDPEDY-------VHRIGRTARGTNGE 343


>gi|134113286|ref|XP_774667.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257311|gb|EAL20020.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 559

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +Q+  ++L+ V TKR+A+DLT++L         +H + +  ER  ++ + + G+  +++ 
Sbjct: 372 SQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLA 431

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            ++   GLD+ + G V   D     F  +    I  IGR  R
Sbjct: 432 TDVASRGLDVRDIGYVINYD-----FPNNCEDYIHRIGRTGR 468


>gi|134113284|ref|XP_774668.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257312|gb|EAL20021.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 546

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +Q+  ++L+ V TKR+A+DLT++L         +H + +  ER  ++ + + G+  +++ 
Sbjct: 359 SQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLA 418

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            ++   GLD+ + G V   D     F  +    I  IGR  R
Sbjct: 419 TDVASRGLDVRDIGYVINYD-----FPNNCEDYIHRIGRTGR 455


>gi|328706401|ref|XP_001950362.2| PREDICTED: putative ATP-dependent RNA helicase Pl10-like
           [Acyrthosiphon pisum]
          Length = 681

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 5/132 (3%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           VE R+ R+ + D+ +   + ++     IL+ V TK+ A+ L E+LY     V  +H +  
Sbjct: 433 VEDRNKRSYLLDLLNATPIRSKPAESLILVFVETKKGADSLEEFLYSNGYPVTSIHGDRT 492

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQ 673
             ER + ++  R G   VLV   +   GLDIP    V   D  +D E ++    +T  + 
Sbjct: 493 QREREDALKSFRSGNTPVLVATAVAARGLDIPHVTHVINYDLPSDVEEYVHRIGRTGRMG 552

Query: 674 TIGRAARNVNSK 685
            +G A    N K
Sbjct: 553 NLGLATSFFNDK 564


>gi|319946374|ref|ZP_08020612.1| DNA helicase RecG [Streptococcus australis ATCC 700641]
 gi|319747527|gb|EFV99782.1| DNA helicase RecG [Streptococcus australis ATCC 700641]
          Length = 671

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+L  Y  +R  R+  +H ++K  E+  I++  + G+ D+LV   ++  G+++P   +
Sbjct: 484 LEEELIAYFGDRA-RIALLHGKMKGEEKEAIMQAFKQGEIDLLVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T+S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTES 582


>gi|268611638|ref|ZP_06145365.1| primosomal protein N' [Ruminococcus flavefaciens FD-1]
          Length = 814

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 13/101 (12%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI---IRDLRLGKFDVLVGINLLREGLD 647
           T+++ E+L  Y  +   RV  M ++  T  R        D R GK+D+++G  ++ +GLD
Sbjct: 569 TQKLEEELAVYFPQ--ARVLRMDADT-TFSRYSYEKNFADFRDGKYDIMIGTQMIGKGLD 625

Query: 648 IPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
            P+  LV +L  DK  F        R+ + + Q +GR+ R 
Sbjct: 626 FPDVTLVGVLSVDKALFAGDFRSYERTFSLITQVVGRSGRG 666


>gi|258645369|ref|ZP_05732838.1| primosomal protein [Dialister invisus DSM 15470]
 gi|260402718|gb|EEW96265.1| primosomal protein [Dialister invisus DSM 15470]
          Length = 791

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R+ EDL + L E       + S  +     +I+ + R GKFD+L G  ++ +G DIP 
Sbjct: 558 TQRIEEDLKKLLPEAKCCRFDVDSTARKYSAAKILSNFRDGKFDILFGTQMVAKGHDIPG 617

Query: 651 CGLVAILDADKE----GFLRSKTS---LIQTIGRAARNV-NSKVIL 688
              V IL  D       +L ++ +   + Q  GRA RN+   +VIL
Sbjct: 618 VQSVGILSVDSTLNMPTYLAAEQTFNLITQCAGRAGRNLEQGRVIL 663


>gi|224824286|ref|ZP_03697394.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224603705|gb|EEG09880.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 417

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+ V +++ A+ +T  L    IR   +H +    +R +++ DL+ G+  VLV  ++  
Sbjct: 242 RVLVFVASRQAADRVTGKLQRAGIRAAALHGDCSQGQRGQVLADLKSGQLQVLVATDVAA 301

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DIP   +V   D       RS       IGR  R
Sbjct: 302 RGIDIPLLPVVVNYD-----LPRSPVDYTHRIGRTGR 333


>gi|219686271|dbj|BAH08688.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Pagrus major]
          Length = 631

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  YL +  +    +H + +  ER   + D R GK  V+V  ++  
Sbjct: 450 RTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQRERELALADFRSGKCPVMVATSVAA 509

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDIP+   V   D  K+         +  IGR  R  N+
Sbjct: 510 RGLDIPDVQHVVNFDLPKD-----IDEYVHRIGRTGRCGNT 545


>gi|251764757|sp|B5FZY7|IF4A3_TAEGU RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|197128100|gb|ACH44598.1| putative DEAD box polypeptide 48 [Taeniopygia guttata]
          Length = 410

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 269 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 323

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 324 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 369


>gi|242065864|ref|XP_002454221.1| hypothetical protein SORBIDRAFT_04g026990 [Sorghum bicolor]
 gi|241934052|gb|EES07197.1| hypothetical protein SORBIDRAFT_04g026990 [Sorghum bicolor]
          Length = 573

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           +D+   L  R I+   +H ++  L R  +++  + G+F VLV   L   GLD+PEC LV 
Sbjct: 446 KDVVFKLEARGIKATELHGDLGKLARSTVLKKFKDGEFRVLVTNELSARGLDVPECDLVV 505

Query: 656 ILD 658
            LD
Sbjct: 506 NLD 508


>gi|226286856|gb|EEH42369.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1450

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 6/68 (8%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DLR GK ++L+  ++L EG+D+  C LV   DA     +++  S IQ  GR AR   S
Sbjct: 459 IDDLRSGKKNLLIATSVLEEGIDVSACHLVVCFDA-----IKNLRSFIQRRGR-ARKERS 512

Query: 685 KVILYADT 692
           K +++ D+
Sbjct: 513 KFVMFLDS 520


>gi|184154691|ref|YP_001843031.1| transcription-repair coupling factor [Lactobacillus fermentum IFO
           3956]
 gi|183226035|dbj|BAG26551.1| transcription-repair coupling factor [Lactobacillus fermentum IFO
           3956]
          Length = 1180

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 59/324 (18%), Positives = 134/324 (41%), Gaps = 25/324 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A +++ + I S ++ QL+ GV+GS KT  +A +   +  P +V+  +     +L ++
Sbjct: 9   QQPAFSKIKEVIDSGQR-QLITGVSGSAKTLLLAALQGELSHPQLVVCDSLYHMQELVAD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            +N    + V  F             P  +    + ++ +      R  A  +LL     
Sbjct: 68  LENLLGEDQVFAF-------------PVEEVLATEVATASPDYRLQRVQALNTLLADQAA 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           +VV+  + +   +     +    + +++G  ++   + + L+   Y+RQ + +  G F +
Sbjct: 115 VVVTDAAGLRRRLPKPGDFQAATLTVEVGGELDPTTVGTQLMAMGYQRQKMVLKPGDFAM 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++I+  +      R+ +F  +++ +  F   + + + N+  + I   + ++ P   
Sbjct: 175 RGSIVDIYALNTAH-PVRIDLFDTEVDSLRYFDAESQRSVENIRAVTILPATDFIAPPAK 233

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           L      +K EL+     L +     E Q L       +  L+       +  Y+  +  
Sbjct: 234 LAQ----LKGELQDDYHHLAQTADEEERQALFGLFDPVISALDAGQLPVEMLEYADRVY- 288

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDE 475
               E P +L +Y+P  S L +D+
Sbjct: 289 ----EQPASLLDYLPAKSNLVLDD 308



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R+   L E + E   R+ Y+H ++   E   ++ D   G++DVLV  +++  G+DI   
Sbjct: 842 ERVVAQLAELVPE--ARIGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANV 899

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + + DAD+ G       L Q  GR  R+
Sbjct: 900 NTLFVEDADRLGL----AQLYQIRGRIGRS 925


>gi|148984940|ref|ZP_01818193.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|307127794|ref|YP_003879825.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
 gi|147922962|gb|EDK74078.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|301800413|emb|CBW33045.1| DEAD box helicase family protein [Streptococcus pneumoniae OXC141]
 gi|306484856|gb|ADM91725.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
          Length = 524

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            G+  + + D     +   S +  IGR  R   S
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKS 336


>gi|40788956|dbj|BAA04879.2| KIAA0111 [Homo sapiens]
          Length = 412

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 271 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 325

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 326 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 371


>gi|74142079|dbj|BAE41100.1| unnamed protein product [Mus musculus]
          Length = 411

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370


>gi|303314883|ref|XP_003067450.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240107118|gb|EER25305.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 668

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+E+L  +N     +H +    ER   +   R G+  +LV   +   G
Sbjct: 449 LIFVETKRMADSLSEFLINQNFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARG 508

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 509 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGL 544


>gi|126666523|ref|ZP_01737501.1| ATP-dependent DNA helicase RecG [Marinobacter sp. ELB17]
 gi|126628911|gb|EAZ99530.1| ATP-dependent DNA helicase RecG [Marinobacter sp. ELB17]
          Length = 691

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 15/150 (10%)

Query: 545 VEQIIRPTGLVDPPVE-IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
           +E I+ P G  D  VE +R+A       Y    L  +        VL  + AE     L 
Sbjct: 458 IETIVVPDGRRDDVVERVRNACQAGRQAYWVCTLIEES------EVLQCQAAEVSATELA 511

Query: 604 ER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           ER  N+R+  +H  +K+ E+ E++   + G  D+LV   ++  G+D+P   L+ I + ++
Sbjct: 512 ERLPNLRIGLVHGRLKSQEKAEVMAQFKSGALDLLVATTVIEVGVDVPNASLIIIENPER 571

Query: 662 EGFLRSKTSLIQTIGRAARNVNSK--VILY 689
            G       L Q  GR  R   +   V++Y
Sbjct: 572 LGL----AQLHQLRGRVGRGEQASYCVLMY 597


>gi|114794629|pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
           Trapped Dead-Box Helicase Bound To Rna
 gi|114794633|pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
           Trapped Dead-Box Helicase Bound To Rna
 gi|217035449|pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
 gi|217035453|pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
          Length = 413

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370


>gi|315223209|ref|ZP_07865070.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
 gi|315187641|gb|EFU21395.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
          Length = 539

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  D+LV  ++   GLDI  
Sbjct: 269 TKRRVDELTRGLKIRGFRTEGIHGDLDQGKRLRVLRDFKNGNLDILVATDVAARGLDI-- 326

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 327 SGVTHVYNYD---IPQDPESYVHRIGRTGR 353


>gi|294786766|ref|ZP_06752020.1| transcription-repair coupling factor [Parascardovia denticolens
           F0305]
 gi|315226389|ref|ZP_07868177.1| transcription-repair coupling factor [Parascardovia denticolens DSM
           10105]
 gi|294485599|gb|EFG33233.1| transcription-repair coupling factor [Parascardovia denticolens
           F0305]
 gi|315120521|gb|EFT83653.1| transcription-repair coupling factor [Parascardovia denticolens DSM
           10105]
          Length = 1206

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 16/177 (9%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEY-FVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           RP +++ P+   A  +    ++++  N  +   +  ++    E   PR DT  ++ S  +
Sbjct: 72  RPVVMVVPSGRDAEDMVGSIRSWYRGNPADVDMIPAWETLPHERLSPRADTVAQRMSVFH 131

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSV-----SCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
               R+ H    S L     IVV  V       + GI  +E      V  ++G  ++  +
Sbjct: 132 ----RLAHPVEGSDLFGPLKIVVVPVRSLIQPVVRGIQDMEP-----VVFQVGQEMDLSQ 182

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
               LV+  Y   D+ + RG F + G  ++IFP        R+  FG++I+ I  F+
Sbjct: 183 AADRLVENAYTCADLVMDRGEFALRGGILDIFPPTAPHPV-RIDFFGDEIDSIKPFH 238


>gi|116668332|pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
           A Resolution
          Length = 374

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 233 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 287

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 288 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 333


>gi|147899364|ref|NP_001082035.1| RNA helicase II/Gu [Xenopus laevis]
 gi|16975508|gb|AAG22819.2|AF302423_1 RNA helicase II/Gu [Xenopus laevis]
          Length = 759

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            + +H +++  ER  +++  R G F+VL+  N+   GLDIPE  LV +  A KE      
Sbjct: 458 AKSLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEA----- 512

Query: 669 TSLIQTIGRAARNVNSKVIL 688
            + +   GR  R   + V +
Sbjct: 513 DAYVHRSGRTGRAGRTGVCI 532


>gi|147902730|ref|NP_001084200.1| eukaryotic initiation factor 4A-III-B [Xenopus laevis]
 gi|82189798|sp|O42226|I4A3B_XENLA RecName: Full=Eukaryotic initiation factor 4A-III-B;
           Short=XeIF-4AIII; Short=eIF-4A-III-B; Short=eIF4A-III-B;
           AltName: Full=ATP-dependent RNA helicase DDX48-B;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3-B;
           AltName: Full=DEAD box protein 48-B; AltName:
           Full=Eukaryotic translation initiation factor 4A isoform
           3-B
 gi|2443810|gb|AAB71410.1| eukaryotic translation initiation factor XeIF-4AIII [Xenopus
           laevis]
          Length = 414

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 273 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 327

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 328 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 373


>gi|47209111|emb|CAF90069.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 415

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 274 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 328

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 329 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 374


>gi|71897163|ref|NP_001025820.1| eukaryotic initiation factor 4A-III [Gallus gallus]
 gi|82197884|sp|Q5ZM36|IF4A3_CHICK RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|53127756|emb|CAG31207.1| hypothetical protein RCJMB04_3e17 [Gallus gallus]
          Length = 412

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 271 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 325

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 326 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 371


>gi|325695766|gb|EGD37665.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK150]
          Length = 1167

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 14/227 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E  ++  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKNSR-QLIMGLSASTKAITIAAGLEESEK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F++  D    E      +    +  ++N  ID  +     + +  +  
Sbjct: 71  LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNVAASKL 129

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++  S+           +    + L +G   +   L+  L +  YK+    + +G + + 
Sbjct: 130 LLPDSID----------FKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYSLR 179

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I
Sbjct: 180 GDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIDNIESILI 225



 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  +     + D   G++D+LV   ++  G+DIP    + + +AD  G     
Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL---- 908

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 909 STLYQLRGRVGR---SNRIAYA 927


>gi|300727714|ref|ZP_07061100.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
 gi|299775002|gb|EFI71608.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
          Length = 555

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 11/135 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   + +   L  ++I    MHS++   ER +I+   + G+ DVLV  +++ 
Sbjct: 247 RVIVFCGSKTKVKQVNSALQRKHINSGEMHSDLTQEERNDIMYKFKAGQLDVLVATDIVS 306

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            G+DI +  +V   D   D E +       +  IGR AR     V +    +++  Q   
Sbjct: 307 RGIDIDDITMVINYDVPHDTEDY-------VHRIGRTARADRDGVAIT--LVSEEDQFYF 357

Query: 702 DETTRRREKQLEHNK 716
            +T +  EK+++ NK
Sbjct: 358 QQTEKFLEKEIQKNK 372


>gi|260663740|ref|ZP_05864628.1| transcription-repair coupling factor [Lactobacillus fermentum
           28-3-CHN]
 gi|260551791|gb|EEX24907.1| transcription-repair coupling factor [Lactobacillus fermentum
           28-3-CHN]
          Length = 1180

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 59/324 (18%), Positives = 134/324 (41%), Gaps = 25/324 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A +++ + I S ++ QL+ GV+GS KT  +A +   +  P +V+  +     +L ++
Sbjct: 9   QQPAFSKIKEVIDSGQR-QLITGVSGSAKTLLLAALQGELSHPQLVVCDSLYHMQELVAD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            +N    + V  F             P  +    + ++ +      R  A  +LL     
Sbjct: 68  LENLLGEDQVFAF-------------PVEEVLATEVATASPDYRLQRVQALNTLLADQAA 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           +VV+  + +   +     +    + +++G  ++   + + L+   Y+RQ + +  G F +
Sbjct: 115 VVVTDAAGLRRRLPKPGDFQAATLTVEVGGELDPTTVGTQLMAMGYQRQKMVLKPGDFAM 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++I+  +      R+ +F  +++ +  F   + + + N+  + I   + ++ P   
Sbjct: 175 RGSIVDIYALNTAHPV-RIDLFDTEVDSLRYFDAESQRSVENIRAVTILPATDFIAPPAK 233

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           L      +K EL+     L +     E Q L       +  L+       +  Y+  +  
Sbjct: 234 LAQ----LKGELQDDYHHLAQTADEEERQALFGLFDPVISALDAGQLPVEMLEYADRVY- 288

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDE 475
               E P +L +Y+P  S L +D+
Sbjct: 289 ----EQPASLLDYLPAKSNLVLDD 308



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R+   L E + E   R+ Y+H ++   E   ++ D   G++DVLV  +++  G+DI   
Sbjct: 842 ERVVAQLAELVPE--ARIGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANV 899

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + + DAD+ G       L Q  GR  R+
Sbjct: 900 NTLFVEDADRLGL----AQLYQIRGRIGRS 925


>gi|227542464|ref|ZP_03972513.1| transcription-repair coupling factor [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181662|gb|EEI62634.1| transcription-repair coupling factor [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 1218

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           V + +G+    +EL+ SLV + Y R D+   RG F V G  I+IFP+   +   RV  +G
Sbjct: 134 VTVTVGEDYPFEELIDSLVFRSYSRVDLVAARGEFAVRGGIIDIFPTTANNPV-RVEFWG 192

Query: 355 NDIEEISEF 363
           +++ EI+ F
Sbjct: 193 DEVTEITTF 201


>gi|60652753|gb|AAX29071.1| DEAD box polypeptide 48 [synthetic construct]
          Length = 412

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370


>gi|332364170|gb|EGJ41947.1| transcription-repair coupling factor [Streptococcus sanguinis SK49]
          Length = 1167

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 14/227 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E  ++  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSNR-QLIMGLSASTKAITIAAGLEESEK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F++  D    E      +    +  ++N  ID  +     + +  +  
Sbjct: 71  LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNVAASKL 129

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++  S+           +    + L +G   +   L+  L +  YK+    + +G + + 
Sbjct: 130 LLPDSID----------FKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYSLR 179

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I
Sbjct: 180 GDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIDNIESILI 225



 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  +     + D   G++D+LV   ++  G+DIP    + + +AD  G     
Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL---- 908

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 909 STLYQLRGRVGR---SNRIAYA 927


>gi|325686483|gb|EGD28512.1| transcription-repair coupling factor [Streptococcus sanguinis SK72]
          Length = 1167

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 14/227 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E   +  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F++  D    E      +    +  ++N  ID  +     + +  +  
Sbjct: 71  LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNVAASKL 129

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++  S+           +    + L +G   +   L+  L +  YK+    + +G + + 
Sbjct: 130 LLPDSID----------FKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYSLR 179

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I
Sbjct: 180 GDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIENIESILI 225



 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           + + Y+H ++  +     + D   G++D+LV   ++  G+DIP    + + +AD  G   
Sbjct: 851 VSIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL-- 908

Query: 667 SKTSLIQTIGRAARNVNSKVILYA 690
             ++L Q  GR  R   S  I YA
Sbjct: 909 --STLYQLRGRVGR---SNRIAYA 927


>gi|325183171|emb|CCA17628.1| putative RNA helicase [Albugo laibachii Nc14]
          Length = 1157

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 28/173 (16%)

Query: 518  WNCLRPTTIV----------VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
            W+   P  IV          +  T GS EL   + I  EQI+    ++D   +  +    
Sbjct: 937  WSATWPKEIVSLAHDFLTDYIQVTVGSLELTANKKI--EQIVE---VMDDHQKYNALVAH 991

Query: 568  VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            +  +YD        G RI+L   TKR A++L+  L       + +H      ER  +++D
Sbjct: 992  LRVIYD--------GGRIILFCETKRGADELSRNLRNSRYICKAIHGNKSQEERDYVLKD 1043

Query: 628  LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             + GK  +LV  ++   GLDI +   V   D  K     +    I  IGR AR
Sbjct: 1044 FKQGKTQILVATDVASRGLDIKDIRYVINFDMPK-----NVEDYIHRIGRTAR 1091


>gi|227487825|ref|ZP_03918141.1| transcription-repair coupling factor [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092152|gb|EEI27464.1| transcription-repair coupling factor [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 1218

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           V + +G+    +EL+ SLV + Y R D+   RG F V G  I+IFP+   +   RV  +G
Sbjct: 134 VTVTVGEDYPFEELIDSLVFRSYSRVDLVAARGEFAVRGGIIDIFPTTANNPV-RVEFWG 192

Query: 355 NDIEEISEF 363
           +++ EI+ F
Sbjct: 193 DEVTEITTF 201


>gi|251764758|sp|B7ZTW1|IF4A3_XENTR RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|213624377|gb|AAI71014.1| hypothetical protein LOC100135173 [Xenopus (Silurana) tropicalis]
          Length = 415

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 274 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 328

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 329 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 374


>gi|213511116|ref|NP_001134430.1| eukaryotic initiation factor 4A-III [Salmo salar]
 gi|251764756|sp|B5DG42|IF4A3_SALSA RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|197631985|gb|ACH70716.1| eukaryotic translation initiation factor 4A isoform 3 [Salmo salar]
 gi|209733202|gb|ACI67470.1| Eukaryotic initiation factor 4A-III [Salmo salar]
          Length = 406

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 265 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 319

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 320 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 365


>gi|166157858|ref|NP_001107349.1| eukaryotic initiation factor 4A-III [Xenopus (Silurana) tropicalis]
 gi|163916017|gb|AAI57178.1| LOC100135173 protein [Xenopus (Silurana) tropicalis]
          Length = 415

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 274 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 328

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 329 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 374


>gi|119175420|ref|XP_001239942.1| hypothetical protein CIMG_09563 [Coccidioides immitis RS]
 gi|118582048|sp|Q1DJF0|DED1_COCIM RecName: Full=ATP-dependent RNA helicase DED1
          Length = 659

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+E+L  +N     +H +    ER   +   R G+  +LV   +   G
Sbjct: 440 LIFVETKRMADSLSEFLINQNFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARG 499

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 500 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGL 535


>gi|146279547|ref|YP_001169705.1| transposase, IS4 family protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557788|gb|ABP72400.1| transposase, IS4 family [Rhodobacter sphaeroides ATCC 17025]
          Length = 956

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R AE +  +   + +R   +HS   +  R   +  L  G+ D+L  +++  EG+D+P  G
Sbjct: 494 RHAEFMAAFFQAQGLRAVAVHSGPGSAPRATSLDRLGRGEIDILFAVDMFNEGVDVPNIG 553

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            V +L   +   L      +Q +GR  R V  K++   D I
Sbjct: 554 TVMMLRPTESVIL-----WLQQLGRGLRRVEGKLLRVIDYI 589


>gi|46136549|ref|XP_389966.1| hypothetical protein FG09790.1 [Gibberella zeae PH-1]
          Length = 657

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +LT+   +     RY+  E   +ER + +   R G+F VLV   +  EG DIP    V +
Sbjct: 309 ELTDRFRQHGFDARYVTGETPKVERGQTLDSFRKGEFPVLVNCGVFTEGTDIPNIDCVIL 368

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR 680
                    RS+  L+Q IGR  R
Sbjct: 369 GRP-----TRSRNLLVQMIGRGMR 387


>gi|329954895|ref|ZP_08295912.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
 gi|328526999|gb|EGF54010.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
          Length = 499

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 9/114 (7%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            A Q   R+++   +K   +++T+ L +  + V  MHS+++  +R E++ + + G+ ++L
Sbjct: 303 FAEQTPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRVNIL 362

Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  +++  G+DI +  LV   D   D E +       +  IGR AR  N  V L
Sbjct: 363 VATDIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAL 409


>gi|228963331|ref|ZP_04124496.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228796359|gb|EEM43802.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 510

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 230 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 287

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 288 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 344

Query: 710 KQLE 713
            ++E
Sbjct: 345 DRME 348


>gi|220681312|gb|ACL80032.1| vasa-like protein [Bombyx mori]
          Length = 601

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 17/144 (11%)

Query: 561 IRSARTQVEDVYDEIN-----------LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           +  A T VE ++ E+            +    G RIL+ V TKR A+ +   L E+ +  
Sbjct: 399 VGGASTDVEQIFIEVTKYEKRNSLKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLT 458

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H +    ER E +++ + GK  +LV   +   GLDI    +V   D  K     S  
Sbjct: 459 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPK-----SID 513

Query: 670 SLIQTIGRAARNVN-SKVILYADT 692
             +  IGR  R  N  K + + D+
Sbjct: 514 EYVHRIGRTGRVGNRGKAVSFYDS 537


>gi|191638602|ref|YP_001987768.1| ATP-dependent DNA helicase RecG [Lactobacillus casei BL23]
 gi|190712904|emb|CAQ66910.1| ATP-dependent DNA helicase, RecG [Lactobacillus casei BL23]
          Length = 679

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H ++K  E+ +I+R    GK  VLV   ++  G+DIP   ++AI DAD+ G     
Sbjct: 502 VALLHGQMKPDEKDQIMRAFSDGKIAVLVSTTVVEVGVDIPNATVMAIFDADRFGL---- 557

Query: 669 TSLIQTIGRAARNVN-SKVILYAD 691
           + L Q  GR  R    ++ +L AD
Sbjct: 558 SQLHQLRGRVGRGQKAAQCLLIAD 581



 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 3/100 (3%)

Query: 560 EIRSARTQVEDV--YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T V  +  Y  +    Q  L +   VL ++    LT+   +  +++  +     
Sbjct: 283 DVGSGKTVVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTS 342

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           T +R E++ +LR G+ ++++G + L+++G+D    GLV I
Sbjct: 343 TKKRRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVI 382


>gi|156405006|ref|XP_001640523.1| predicted protein [Nematostella vectensis]
 gi|156227658|gb|EDO48460.1| predicted protein [Nematostella vectensis]
          Length = 407

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I++D R
Sbjct: 266 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVASMHGDMPQKEREAIMKDFR 320

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 321 AGQSRVLISTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 366


>gi|332849251|ref|XP_001160875.2| PREDICTED: eukaryotic initiation factor 4A-III-like, partial [Pan
           troglodytes]
          Length = 309

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 168 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 222

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 223 SGASRVLISTDVWARGLDVPQVSLIINYDLPN-----NRELYIHRIGRSGR 268


>gi|323492540|ref|ZP_08097688.1| transcription-repair coupling factor [Vibrio brasiliensis LMG
           20546]
 gi|323313327|gb|EGA66443.1| transcription-repair coupling factor [Vibrio brasiliensis LMG
           20546]
          Length = 1153

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 123/296 (41%), Gaps = 38/296 (12%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G+     +A++ +      ++  P+   A +L  E + F  H      V+ +  ++   Y
Sbjct: 26  GASLAIAIAELADRHGSHTLLAVPDPQTALKLQQEIEQFTGHE-----VALFPDWETLPY 80

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS-QMIVQ 296
               D++   +  I+++I R+    T++       I +  VS +    S   +  Q  + 
Sbjct: 81  ----DSFSPHQEIISDRISRLYQLPTQT-----SGITIVPVSTLLQRQSPRDFLLQHTLM 131

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           +K+GD    ++L   L K  Y+  D     G +   G  +++FP    D  +R+  F ++
Sbjct: 132 VKVGDLFSLEKLRLQLEKSGYRNVDQVFGPGEYASRGSILDLFPMGSSD-PYRIDFFDDE 190

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           I+ I  F P   + I + + I++     +    PT  +A++  +   + R          
Sbjct: 191 IDTIRTFDPENQRSIEDTKEIRLLPAHEF----PTSESAIEDFRIRWRQRF--------- 237

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
            EA+R  + +     M  + G+  +   Y + L      E   TLF YIP+DSLL 
Sbjct: 238 -EARREPESVY----MQVSKGTWPAGIEYWQPLFF----EHTETLFNYIPDDSLLL 284


>gi|291515893|emb|CBK65103.1| transcription-repair coupling factor (mfd) [Alistipes shahii WAL
           8301]
          Length = 1112

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 46/226 (20%), Positives = 95/226 (42%), Gaps = 15/226 (6%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           A+ +L +   +R     L  + G   +F  A  +       + +A ++  AA L ++F N
Sbjct: 17  ALGRLCREYKNRSATVHLEELVGGALSFYAAAAVAESGGVHVFVAEDRDAAAYLLNDFYN 76

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
                 V +F S +          R+  Y  +++    Q     H A R+   +   +V 
Sbjct: 77  LLDERQVYFFPSSW---------KRSAAYGAEDAQGVVQRTATMH-AVRNFSGKGYLVVC 126

Query: 276 SSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +    +   +   E+  +  + +++GD +  + L  +LV   + R D     G + V G 
Sbjct: 127 TCPEALAERVADAEALQRETITVRVGDRISIEVLEQALVDASFTRVDFVYEPGQYSVRGG 186

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEF---YPLTGQKIRNVETI 377
            +++F S+ E   +R+  FG++++ I  F     L+  ++  VE I
Sbjct: 187 IVDVF-SYSESKPYRLDFFGDEVDSIRRFNISSQLSSDRLERVEII 231



 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 30/181 (16%)

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART-QVE 569
           R LRF      R  +++ +  P    +     +  E+IIR        VE   AR  QV 
Sbjct: 716 RTLRFSLMGS-RDLSVISTPPPNRQPILTESHVFSEEIIRDA------VEAELARGGQVY 768

Query: 570 DVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            V++ + +L A QGL   +T L  +              RV   H ++   +  ++I D 
Sbjct: 769 FVHNRVEDLPALQGL---ITRLCPKA-------------RVAVGHGKMPAEQLEKLIMDF 812

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G+FDVLV   ++  G+DIP    + + +A   G     + L Q  GR  R+ N K   
Sbjct: 813 IYGEFDVLVSTTIVENGIDIPNANTIIVDNAQNFGL----SDLHQLRGRVGRS-NQKGYC 867

Query: 689 Y 689
           Y
Sbjct: 868 Y 868


>gi|270007520|gb|EFA03968.1| hypothetical protein TcasGA2_TC014113 [Tribolium castaneum]
          Length = 482

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++      + ++   T+R  + LTE +++R+  V  MH +++  ER  I+R  R
Sbjct: 341 DLYDTLSIT-----QAVIFCNTRRKVDWLTENMHKRDFTVSAMHGDMEQRERDVIMRQFR 395

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 396 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 433


>gi|67423408|dbj|BAD99523.1| VASA RNA helicase [Artemia franciscana]
          Length = 726

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 42/78 (53%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  ++G++ L+   +K+ A+ L   L  +N+    +H +    +R E++RD + G  ++L
Sbjct: 550 LTEKEGVKTLVFASSKKTADFLAALLSTKNLPATSIHGDRFQYQREEVLRDFKSGHRNIL 609

Query: 637 VGINLLREGLDIPECGLV 654
           V   +   GLDI   GLV
Sbjct: 610 VATAVAARGLDIKGVGLV 627


>gi|171693513|ref|XP_001911681.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946705|emb|CAP73508.1| unnamed protein product [Podospora anserina S mat+]
          Length = 694

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L    G   L+ V TKRMA+ L+++L  +N     +H +    ER   +   R GK  +L
Sbjct: 449 LHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALELFRNGKCPIL 508

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 509 VATAVAARGLDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 553


>gi|320037809|gb|EFW19746.1| ATP-dependent RNA helicase DED1 [Coccidioides posadasii str.
           Silveira]
          Length = 666

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+E+L  +N     +H +    ER   +   R G+  +LV   +   G
Sbjct: 447 LIFVETKRMADSLSEFLINQNFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARG 506

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 507 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGL 542


>gi|311771467|dbj|BAJ25759.1| vasa [Pagrus major]
          Length = 631

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  YL +  +    +H + +  ER   + D R GK  V+V  ++  
Sbjct: 450 RTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQRERELALADFRSGKCPVMVATSVAA 509

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDIP+   V   D  K+         +  IGR  R  N+
Sbjct: 510 RGLDIPDVQHVVNFDLPKD-----IDEYVHRIGRTGRCGNT 545


>gi|288940348|ref|YP_003442588.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288895720|gb|ADC61556.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 683

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RI++ V TKR A+ +  YL    I    +  +V   +R++++RD   G   VLVG ++  
Sbjct: 299 RIIVFVNTKREADRVWGYLQGNGIDTAVLSGDVPQPKRLKLLRDFTNGTLPVLVGTDVAA 358

Query: 644 EGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            GL IP+   V   D   D E +       +  IGR AR
Sbjct: 359 RGLHIPDVTHVVNYDLPEDPEDY-------VHRIGRTAR 390


>gi|229021662|ref|ZP_04178248.1| Transcription-repair-coupling factor [Bacillus cereus AH1272]
 gi|228739637|gb|EEL90047.1| Transcription-repair-coupling factor [Bacillus cereus AH1272]
          Length = 1010

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 79/149 (53%), Gaps = 9/149 (6%)

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           G F + G  ++I+P   E++ +R+  F  +++ I  F     +     E++K    + ++
Sbjct: 6   GEFSLRGGILDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVKFGPATEFL 64

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
             +  L   +K+++E L   + +L  +   L+   LE  +++++EML+   + QSIE   
Sbjct: 65  FSQEELKLGIKHLEEGLTKTMQKLSDDK--LKTTVLET-VSHEIEMLK---NGQSIEQMF 118

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           +YL+     + P +L +Y+PED ++ +DE
Sbjct: 119 KYLSIFY--KEPASLIDYLPEDGVVILDE 145



 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 692 DARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 750

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 751 ---SQLYQLRGRVGRS 763


>gi|225717006|gb|ACO14349.1| Eukaryotic initiation factor 4A-III [Esox lucius]
          Length = 406

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 265 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 319

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 320 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 365


>gi|186683736|ref|YP_001866932.1| type III restriction enzyme, res subunit [Nostoc punctiforme PCC
           73102]
 gi|186466188|gb|ACC81989.1| type III restriction enzyme, res subunit [Nostoc punctiforme PCC
           73102]
          Length = 541

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 10/124 (8%)

Query: 574 EINLAAQQGLRILLTVLTKR--------MAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +I L     LRIL+ +L +          A++ T Y   + + +  +  +    ER EI+
Sbjct: 315 DIALGTDGKLRILINLLAEHYPARILIFTADNATVYRISQELLIPAITHQTPVKERHEIL 374

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R GK++ LV  ++L EG+D+P   +  IL     G  R  T  +  I R     N +
Sbjct: 375 TKFREGKYNTLVASHVLNEGVDVPAATVAIILSGT--GSAREYTQRLGRILRKGNIENKQ 432

Query: 686 VILY 689
            ILY
Sbjct: 433 AILY 436


>gi|226226331|ref|YP_002760437.1| primosomal protein N' [Gemmatimonas aurantiaca T-27]
 gi|226089522|dbj|BAH37967.1| primosomal protein N' [Gemmatimonas aurantiaca T-27]
          Length = 767

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA-MQRP---AIVMAPNKI 204
           PS  Q AAIA +L G     +V LL G+TGSGKT    +V+ A +Q+P   AIV+ P   
Sbjct: 212 PSASQRAAIAAILAG--DPGQVFLLHGITGSGKTLVYIEVLRAVLQQPGRTAIVLVPEIA 269

Query: 205 LAAQLYSEFKNFF 217
           L +Q    F+  F
Sbjct: 270 LTSQTVDRFRGAF 282


>gi|51892522|ref|YP_075213.1| ATP-dependent DNA helicase RecG [Symbiobacterium thermophilum IAM
           14863]
 gi|51856211|dbj|BAD40369.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 709

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 26/199 (13%)

Query: 514 RFEEWNCLRPTTIVVSATPGSWELE-QCQGIIVEQII-------RPTGLVDPPVEIRSAR 565
           R ++   + P T+V++ATP    L     G +   +I       RP G    P    SAR
Sbjct: 421 RLQQKGEVMPDTLVMTATPIPRTLALTLYGDLDVSVIDELPPGRRPVGTYWRP---ESAR 477

Query: 566 TQVEDVYDEINL-AAQQGLRI--LLTVLTKRMAEDLTEYLYER------NIRVRYMHSEV 616
            QV D      + A +QG  +  L+    K  A+  TE+ YER      ++R+  +H  +
Sbjct: 478 RQVYDHLMRTEVPAGRQGYVVCPLIEESDKLQAQAATEW-YERLKAQYPDVRLGLLHGRL 536

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           +  E+  ++   R G+  VLV   ++  G+D+P   ++ I  AD+ G       L Q  G
Sbjct: 537 RPAEKEAVMEAFRAGEIQVLVTTTVIEVGVDVPNATMMIIEGADRFGL----AQLHQLRG 592

Query: 677 RAARNVN-SKVILYADTIT 694
           R  R  + S  +L AD  T
Sbjct: 593 RVGRGSHQSYCVLIADPKT 611


>gi|289167442|ref|YP_003445711.1| branch migration of Holliday junctions, junction-specific DNA
           helicase,ATP-dependent DNA helicase, recG homolog
           [Streptococcus mitis B6]
 gi|288907009|emb|CBJ21843.1| branch migration of Holliday junctions, junction-specific DNA
           helicase,ATP-dependent DNA helicase, recG homolog
           [Streptococcus mitis B6]
          Length = 671

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H ++K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|256832539|ref|YP_003161266.1| DEAD/DEAH box helicase domain-containing protein [Jonesia
           denitrificans DSM 20603]
 gi|256686070|gb|ACV08963.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
           20603]
          Length = 657

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 21/139 (15%)

Query: 558 PVEIRSAR-----TQVEDVYDEINLAAQQG--LRILLT---------VLTKRMAEDLTEY 601
           PVEI  AR     T ++  Y  +    + G   R+L T           T+  AE++   
Sbjct: 248 PVEIAVARQSTTVTAIDQEYAVVPFRHKTGSLYRVLATSDVEAAIVFCRTRGAAEEVGAA 307

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L ER +    +  +V   +R +I+  LR G+ DVLV  ++   GLD+   GLV   D   
Sbjct: 308 LIERGVSAATISGDVPQKDREKIVERLRNGQLDVLVATDVAARGLDVDRIGLVVNFDIPG 367

Query: 662 EGFLRSKTSLIQTIGRAAR 680
           E       + +  IGR  R
Sbjct: 368 E-----PEAYVHRIGRTGR 381


>gi|82196760|sp|Q5U526|I4A3A_XENLA RecName: Full=Eukaryotic initiation factor 4A-III-A;
           Short=eIF-4A-III-A; Short=eIF4A-III-A; AltName:
           Full=ATP-dependent RNA helicase DDX48-A; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3-A; AltName:
           Full=DEAD box protein 48-A; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3 A
 gi|54311504|gb|AAH84859.1| Unknown (protein for MGC:85498) [Xenopus laevis]
          Length = 415

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 274 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 328

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 329 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 374


>gi|307705414|ref|ZP_07642271.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK597]
 gi|307621013|gb|EFO00093.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK597]
          Length = 671

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 9/116 (7%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT Y +     V  +H ++K+ E+ +I+++ +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTAY-FAGKAEVALLHGKMKSDEKDQIMQEFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQ---LAIDETT 705
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S +   L + ETT
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDSGKDRMLIMTETT 594


>gi|198274601|ref|ZP_03207133.1| hypothetical protein BACPLE_00753 [Bacteroides plebeius DSM 17135]
 gi|198272048|gb|EDY96317.1| hypothetical protein BACPLE_00753 [Bacteroides plebeius DSM 17135]
          Length = 424

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 19/155 (12%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +QQ  R+++   +K   +++T+ L    + V  MHS+++  +R EI+ + R  + D+LV 
Sbjct: 241 SQQPERVIIFASSKLKVKEVTKALKRMKLNVGEMHSDLEQSQREEIMHEFRNRRIDILVA 300

Query: 639 INLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +++  G+DI +  LV   D   D E +       +  IGR AR  N    +        
Sbjct: 301 TDIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGCAI-------- 345

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
               + ET + R KQ+E     +I    V E++ E
Sbjct: 346 --TFVSETEQTRFKQIETFLGKDIYKLPVPEELGE 378


>gi|166014135|gb|ABY77970.1| vasa [Thunnus orientalis]
          Length = 644

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 462 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 521

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDIP+   V   D        +    +  IGR  R  N+
Sbjct: 522 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNT 557


>gi|166364821|ref|YP_001657094.1| transcription-repair coupling factor [Microcystis aeruginosa
           NIES-843]
 gi|166087194|dbj|BAG01902.1| transcription-repair coupling factor [Microcystis aeruginosa
           NIES-843]
          Length = 1160

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 33/189 (17%)

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           E + Q      +G  +E K L  +L +  Y+R  +    G +   GD ++IFP   E + 
Sbjct: 134 EVFEQYSDNFAVGRVIEAKNLDLTLARLGYERVSLVETEGQWSRRGDIVDIFPVSAE-LP 192

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL-NTAMKYIKEELKMR 406
            R+  FG+++E++ EF P T + + ++  + +   S      P+L  T   Y++ E    
Sbjct: 193 VRLEFFGDELEKLREFDPATQRSLDSIPNLLLTPTSFAAMIAPSLPPTVADYLEAE---- 248

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             E EK    +  + +E+ +                      L+ R P     +L +Y+P
Sbjct: 249 --EREKLANGIYPEGIERFLG---------------------LSFRQPA----SLLDYLP 281

Query: 467 EDSLLFVDE 475
           E++L+  DE
Sbjct: 282 ENTLIAFDE 290


>gi|111023475|ref|YP_706447.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
 gi|110823005|gb|ABG98289.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
          Length = 752

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++RV  +H  +   E+  ++RD   G  DVLV   ++  G+D+P   ++ I+DAD+ G  
Sbjct: 568 DLRVGLLHGRLPADEKDAVMRDFTAGDIDVLVCTTVVEVGVDVPNATIMVIVDADRFGV- 626

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R 
Sbjct: 627 ---SQLHQLRGRVGRG 639


>gi|321260432|ref|XP_003194936.1| ATP-dependent RNA helicase DBP2 (p68-like protein) [Cryptococcus
           gattii WM276]
 gi|317461408|gb|ADV23149.1| ATP-dependent RNA helicase DBP2 (p68-like protein), putative
           [Cryptococcus gattii WM276]
          Length = 537

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +Q+  ++L+ V TKR+A+DLT++L         +H + +  ER  ++ + + G+  +++ 
Sbjct: 352 SQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLA 411

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            ++   GLD+ + G V   D     F  +    I  IGR  R
Sbjct: 412 TDVASRGLDVRDIGYVINYD-----FPNNCEDYIHRIGRTGR 448


>gi|315925837|ref|ZP_07922044.1| DNA helicase RecG [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315620946|gb|EFV00920.1| DNA helicase RecG [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 679

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+ +  ++  Y Y+   RV  +H ++K  E+  ++ D   GK D LV  +++  G+D+P 
Sbjct: 486 TQTVCREVDRY-YKGLYRVACLHGKMKPDEKAAVVVDFSAGKIDCLVATSIIEVGIDVPN 544

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             ++ ++ AD+ G     + L Q  GR  R 
Sbjct: 545 VTMMVVMSADRFGL----SQLHQLRGRVGRG 571


>gi|289433569|ref|YP_003463441.1| transcription-repair coupling factor [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289169813|emb|CBH26351.1| transcription-repair coupling factor [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 1178

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 65/321 (20%), Positives = 135/321 (42%), Gaps = 25/321 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNSLDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   L+     IV+ 
Sbjct: 74  MEADRLFLY-------------PADELISSELSISSPELRGQRVEALDFLISGKPGIVIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    + +  G+ ++ + L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPEVLRQQLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTSRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIEL-EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           +  +++++ + L EL EKE +       +  +    E LE   S    + + +Y+    P
Sbjct: 240 VNRLEKKMMLTLNELKEKEDK-------QALVENLEEELEMLRSGVKPDMFFKYIGLAYP 292

Query: 455 GEPPPTLFEYIPEDSLLFVDE 475
              P +LF+Y P+++ + +DE
Sbjct: 293 D--PASLFDYFPKNTAILLDE 311



 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H ++   E   +I     G+FDVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 859 DARVAIAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 917

Query: 666 RSKTSLIQTIGRAAR 680
              + L Q  GR  R
Sbjct: 918 ---SQLYQLRGRVGR 929


>gi|225351843|ref|ZP_03742866.1| hypothetical protein BIFPSEUDO_03444 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157090|gb|EEG70429.1| hypothetical protein BIFPSEUDO_03444 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 1182

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 24/184 (13%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFF---PHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           A  RP +++  +   A ++    ++++   P++  +  +  ++    E   PR DT   +
Sbjct: 63  AGTRPVVLVVASGREAEEMVEAIRSWYSGDPNDVAQ--LEAWETLPHERLSPRADTVASR 120

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSV-----SCIYGIGSVES--YSQMIVQLKIG 300
            +       R+ H    S L     I+V  V       + G+G VE   +SQ       G
Sbjct: 121 MAVFR----RLMHPQEGSKLFGPIRILVMPVRSLIQPVVAGLGDVEPLVFSQ-------G 169

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           + +   E    LV+  Y R D+ + RG F V G  I++FP  L     R+  FG++I+ I
Sbjct: 170 EELALDEASHRLVENAYTRVDLVMDRGEFAVRGGIIDVFPPTLPHPV-RIEFFGDEIDTI 228

Query: 361 SEFY 364
            EF+
Sbjct: 229 KEFH 232


>gi|116333593|ref|YP_795120.1| RecG-like helicase [Lactobacillus brevis ATCC 367]
 gi|116098940|gb|ABJ64089.1| ATP-dependent DNA helicase RecG [Lactobacillus brevis ATCC 367]
          Length = 677

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 8/104 (7%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           +E   +V  +H  +K  E+  I+   +  +F VLV   ++  G+D+P   L+ I DAD  
Sbjct: 494 FEPTYKVGLLHGRMKDDEKNAIMAAFKANEFQVLVATTVIEVGVDVPNATLMMIYDADHF 553

Query: 663 GFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSIQLAIDETT 705
           G       L Q  GR  R    S  IL AD      QLAI+  T
Sbjct: 554 GL----AQLHQLRGRVGRGTRASACILIADPKN---QLAIERMT 590


>gi|195111735|ref|XP_002000433.1| GI10230 [Drosophila mojavensis]
 gi|193917027|gb|EDW15894.1| GI10230 [Drosophila mojavensis]
          Length = 801

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R  R G   +LV   +   G
Sbjct: 558 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 617

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D   D E ++    +T  +  +G A    N K
Sbjct: 618 LDIPHVTHVINFDLPTDVEEYVHRIGRTGRMGNLGVATSFFNDK 661


>gi|171778202|ref|ZP_02919431.1| hypothetical protein STRINF_00270 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283026|gb|EDT48450.1| hypothetical protein STRINF_00270 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 1169

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 57/305 (18%), Positives = 127/305 (41%), Gaps = 29/305 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G++G+ +   +A   +A +   +++   +    +L S+  +    + V  F +  D
Sbjct: 30  QLIMGLSGASRALAIASAYQANEEKVVIITSTQNEVEKLASDLSSLIGEDKVYTFFAD-D 88

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
               E      D    +  ++N   D+          +++  ++ S V     + + ++Y
Sbjct: 89  VAAAEFIFASMDKAHSRLEALNFLQDK----------KQSGILITSLVGTRVLLPNPKTY 138

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           S+  +   +G+     +++  L    Y++    +  G F   GD ++I+     D  +R+
Sbjct: 139 SESQLNFIVGEDYNLDKVVKVLSNVGYQKVSQVLNPGEFSRRGDIVDIYEI-TADYPYRL 197

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             FG++++ I +F   T + + NVE + IY     +        A +  +          
Sbjct: 198 EFFGDEVDGIRQFDAQTQKSLSNVEQVTIYPADELILSEEDFARASQAFE---------- 247

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
               R LE  + +Q+  Y  E+   T      ++  R+L+     E   TL +YIP+ + 
Sbjct: 248 ----RYLETAKDDQQ-AYLSELYAATQEQYRHQDIRRFLSLFFAKE--WTLLDYIPKGTP 300

Query: 471 LFVDE 475
           +F D+
Sbjct: 301 VFFDD 305


>gi|90085300|dbj|BAE91391.1| unnamed protein product [Macaca fascicularis]
          Length = 406

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+IR  R G  ++LV  ++  EGLDIP+C +V      + G L ++ S++Q  GRA
Sbjct: 70  EVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVV-----RYGLLTNEISMVQARGRA 120



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+IR  R G  ++LV  ++  EGLDIP+C +V      + G L ++ S++Q  GRA
Sbjct: 202 EVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVV-----RYGLLTNEISMVQARGRA 252


>gi|114794619|pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794620|pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794621|pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794622|pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
          Length = 391

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 248 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 302

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 303 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 348


>gi|321466548|gb|EFX77543.1| hypothetical protein DAPPUDRAFT_321368 [Daphnia pulex]
          Length = 581

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 7/97 (7%)

Query: 585 ILLTVLTKRMAEDL-TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +L+ V TK  A++L TE +Y+  I V  +H+E   L+R  +++  R G+  VL+   L+ 
Sbjct: 386 VLVFVQTKERAKELYTELVYD-GINVDVIHAERSQLQRDNVVKSFRSGQIWVLICTELMG 444

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D     LV   D     F  S  S I  IGR  R
Sbjct: 445 RGIDFKGVNLVVNYD-----FPPSAISYIHRIGRTGR 476


>gi|297668722|ref|XP_002812573.1| PREDICTED: LOW QUALITY PROTEIN: interferon-induced helicase C
           domain-containing protein 1-like [Pongo abelii]
          Length = 1025

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 12/132 (9%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ E+I   R GK ++L+   +  EGLDI EC +V      + G + ++ +++Q  GR A
Sbjct: 770 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 823

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEVIDPI 736
           R   S  +L A + +  I+    ET     +++ +   H   N+ P+    KI+E+    
Sbjct: 824 RADESTYVLVAHSGSGVIE---RETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQS 880

Query: 737 LLEDAATTNISI 748
           ++E    T  SI
Sbjct: 881 IMEKKMKTKRSI 892


>gi|322374711|ref|ZP_08049225.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
           [Streptococcus sp. C300]
 gi|321280211|gb|EFX57250.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
           [Streptococcus sp. C300]
          Length = 449

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|114052719|ref|NP_001040588.1| interferon-induced helicase C domain-containing protein 1 [Macaca
           mulatta]
 gi|113201795|gb|ABI33114.1| melanoma differentiation associated protein-5 [Macaca mulatta]
          Length = 1025

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 12/132 (9%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ E+I   R GK ++L+   +  EGLDI EC +V      + G + ++ +++Q  GR A
Sbjct: 770 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 823

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEVIDPI 736
           R   S  +L A + +  I+    ET     +++ +   H   N+ P+    KI+E+    
Sbjct: 824 RADESTYVLVAHSGSGVIE---RETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQS 880

Query: 737 LLEDAATTNISI 748
           ++E    T  SI
Sbjct: 881 IMEKKMKTKRSI 892


>gi|51712358|ref|XP_485792.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus]
 gi|82902181|ref|XP_918907.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus]
          Length = 411

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH  +   ER  I+++ R
Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGNMPQKERESIMKEFR 324

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 325 SGASRVLISTDIWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 370


>gi|332359490|gb|EGJ37309.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK1056]
          Length = 1167

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 14/227 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E   +  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F++  D    E      +    +  ++N  ID  +     + +  +  
Sbjct: 71  LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNVAASKL 129

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++  S+           +    + L +G   +   L+  L +  YK+    + +G + + 
Sbjct: 130 LLPDSID----------FKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYSLR 179

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I
Sbjct: 180 GDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIENIESILI 225



 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           + + Y+H ++  +     + D   G++D+LV   ++  G+DIP    + + +AD  G   
Sbjct: 851 VSIGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL-- 908

Query: 667 SKTSLIQTIGRAARNVNSKVILYA 690
             ++L Q  GR  R   S  I YA
Sbjct: 909 --STLYQLRGRVGR---SNRIAYA 927


>gi|324505559|gb|ADY42388.1| ATP-dependent RNA helicase DDX3X [Ascaris suum]
          Length = 788

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 4/145 (2%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A DL  YL +    V  +H ++K  ER + +   R G   +LV   +   G
Sbjct: 556 LVFVETKRGASDLAYYLQKDGYNVVAIHGDLKQFEREKHLETFRSGVAPILVATAVAARG 615

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           LDIP    V   D  +D + ++    +T  +  +G A    N K    A  + + I  A 
Sbjct: 616 LDIPNVKHVINYDLPSDIDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARDLAELIVEAN 675

Query: 702 DETTRRREKQLEHNKKHNINPQSVK 726
            E     EK     +++   P  VK
Sbjct: 676 QELPEWLEKLSSDAQRYGSRPGRVK 700


>gi|301772834|ref|XP_002921834.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic initiation factor
           4A-III-like [Ailuropoda melanoleuca]
          Length = 417

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 276 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 330

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 331 SGASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 376


>gi|49119283|gb|AAH73332.1| LOC398189 protein [Xenopus laevis]
          Length = 727

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            + +H +++  ER  +++  R G F+VL+  N+   GLDIPE  LV +  A KE      
Sbjct: 426 AKSLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEA----- 480

Query: 669 TSLIQTIGRAARNVNSKVIL 688
            + +   GR  R   + V +
Sbjct: 481 DAYVHRSGRTGRAGRTGVCI 500


>gi|157278092|ref|NP_001098146.1| VASA [Oryzias latipes]
 gi|14522857|dbj|BAB61047.1| VASA [Oryzias latipes]
          Length = 617

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 435 RTMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKALADFRSGKCPVLVATSVAS 494

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDIP+   V   D        +    +  IGR  R  N+
Sbjct: 495 RGLDIPDVQHVVNFD-----LPNTIDDYVHRIGRTGRCGNT 530


>gi|302789414|ref|XP_002976475.1| hypothetical protein SELMODRAFT_105510 [Selaginella moellendorffii]
 gi|300155513|gb|EFJ22144.1| hypothetical protein SELMODRAFT_105510 [Selaginella moellendorffii]
          Length = 613

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           IL+ V TKR A+ L ++L +  I    +H +   +ER   +R  R G   +LV  ++   
Sbjct: 417 ILVFVETKRGADSLEDWLIQMGISATTIHGDRTQVEREHALRSFRTGVTPILVATDVAAR 476

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           GLDIP   +  +++ D    +      I   GRA ++
Sbjct: 477 GLDIPH--VAHVINYDLPSDIDDYVHRIGRTGRAGKS 511


>gi|227534888|ref|ZP_03964937.1| DNA helicase RecG [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227187644|gb|EEI67711.1| DNA helicase RecG [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 698

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H ++K  E+ +I+R    GK  VLV   ++  G+DIP   ++AI DAD+ G     
Sbjct: 521 VALLHGQMKPDEKDQIMRAFSDGKIAVLVSTTVVEVGVDIPNATVMAIFDADRFGL---- 576

Query: 669 TSLIQTIGRAARNVN-SKVILYAD 691
           + L Q  GR  R    ++ +L AD
Sbjct: 577 SQLHQLRGRVGRGQKAAQCLLIAD 600



 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 3/100 (3%)

Query: 560 EIRSARTQVEDV--YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T V  +  Y  +    Q  L +   VL ++    LT+   +  +++  +     
Sbjct: 302 DVGSGKTVVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTS 361

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           T +R E++ +LR G+ ++++G + L+++G+D    GLV I
Sbjct: 362 TKKRRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVI 401


>gi|291165175|gb|ADD81192.1| vasa [Katsuwonus pelamis]
          Length = 643

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 10/122 (8%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           S R Q+ D+     +      R ++ V TKR A+ +  +L +  +    +H + +  ER 
Sbjct: 445 SKREQLHDLLKTTGME-----RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQRERE 499

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           + + D R GK  VLV  ++   GLDIP+   V   D        +    +  IGR  R  
Sbjct: 500 QALTDFRSGKCPVLVATSVAARGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCG 554

Query: 683 NS 684
           N+
Sbjct: 555 NT 556


>gi|291165173|gb|ADD81191.1| vasa [Euthynnus affinis]
          Length = 640

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 458 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 517

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDIP+   V   D        +    +  IGR  R  N+
Sbjct: 518 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNT 553


>gi|226365976|ref|YP_002783759.1| ATP-dependent DNA helicase RecG [Rhodococcus opacus B4]
 gi|226244466|dbj|BAH54814.1| ATP-dependent DNA helicase RecG [Rhodococcus opacus B4]
          Length = 752

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++RV  +H  +   E+  ++RD   G  DVLV   ++  G+D+P   ++ I+DAD+ G  
Sbjct: 568 DLRVGLLHGRLPADEKDAVMRDFTAGDIDVLVCTTVVEVGVDVPNATIMVIVDADRFGV- 626

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R 
Sbjct: 627 ---SQLHQLRGRVGRG 639


>gi|195611596|gb|ACG27628.1| EMB1586 [Zea mays]
 gi|223946723|gb|ACN27445.1| unknown [Zea mays]
          Length = 573

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           +D+   L  R I+   +H ++  L R  +++  + G+F VLV   L   GLD+PEC LV 
Sbjct: 445 KDVVFKLEARGIKATELHGDLGKLARSTVLKKFKDGEFRVLVTNELSARGLDVPECDLVV 504

Query: 656 ILD 658
            LD
Sbjct: 505 NLD 507


>gi|195054323|ref|XP_001994075.1| GH22875 [Drosophila grimshawi]
 gi|193895945|gb|EDV94811.1| GH22875 [Drosophila grimshawi]
          Length = 799

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R  R G   +LV   +   G
Sbjct: 561 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 620

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D   D E ++    +T  +  +G A    N K
Sbjct: 621 LDIPHVTHVINFDLPTDVEEYVHRIGRTGRMGNLGVATSFFNDK 664


>gi|218895359|ref|YP_002443770.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
 gi|228906018|ref|ZP_04069910.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 200]
 gi|228937529|ref|ZP_04100171.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228970416|ref|ZP_04131071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228976986|ref|ZP_04137394.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           Bt407]
 gi|218543277|gb|ACK95671.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
 gi|228782733|gb|EEM30903.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           Bt407]
 gi|228789302|gb|EEM37226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228822140|gb|EEM68126.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228853621|gb|EEM98386.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 200]
 gi|326938018|gb|AEA13914.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 529

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 363

Query: 710 KQLE 713
            ++E
Sbjct: 364 DRME 367


>gi|113461304|ref|YP_719373.1| transcription-repair coupling factor [Haemophilus somnus 129PT]
 gi|112823347|gb|ABI25436.1| transcription-repair coupling factor [Haemophilus somnus 129PT]
          Length = 1143

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 65/323 (20%), Positives = 128/323 (39%), Gaps = 47/323 (14%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY-- 228
           +LL  V     +  +A+++        VM P+ + +A    +F   F    V +F  +  
Sbjct: 15  KLLGNVLQGADSLVIAEIVRRYDGLIFVMTPD-VKSAVCLEKFLTEFTQQPVTFFPDWET 73

Query: 229 --YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
             YD + P                 +++I   R SA   L   N  I ++ ++ +   + 
Sbjct: 74  LPYDNFSP-----------------HQEIISARLSALFQLQHSNKGIFIAPITTVMQRVC 116

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
             E     ++ +K GD +  +     L    Y+  +  +  G F V G  +++FP     
Sbjct: 117 PAEFLQHNVLLIKRGDRLNIERFRLQLENAGYRAVEQVLEHGEFAVRGALLDLFPMG-SA 175

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           V +R+  F ++I+ I  F   T + +  ++ I +     +    PT    + + + + + 
Sbjct: 176 VPFRLDFFDDEIDSIRTFDVDTQRTLEEIQRINLLPAQEF----PTDRKGIDFFRSQFRE 231

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
              E+ +     + + + Q+I        + G+  S   Y + L          TLF+YI
Sbjct: 232 TFAEIRR-----DPEHIYQQI--------SKGTLVSGIEYWQPLFFNQMA----TLFDYI 274

Query: 466 PEDSLLFVDESHVTIPQISGMYR 488
           P D+ LFVD   + +PQ    Y+
Sbjct: 275 P-DNTLFVDFEQI-MPQAERFYQ 295


>gi|89094300|ref|ZP_01167241.1| transcription-repair coupling protein Mfd [Oceanospirillum sp.
           MED92]
 gi|89081359|gb|EAR60590.1| transcription-repair coupling protein Mfd [Oceanospirillum sp.
           MED92]
          Length = 1150

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/204 (18%), Positives = 85/204 (41%), Gaps = 10/204 (4%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           V G+     ++   +      +V+  + + A +L  E   F     +   +S+     P+
Sbjct: 21  VHGAATGLLISDATKRFDGFTLVITKDTLEANRLLDEVNFFSADEKIGEILSF-----PD 75

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
             +   DT+   +  I+E+I  +    +     +N  ++    + ++     +  +    
Sbjct: 76  WEILPYDTFSPHQDIISERISTLNRLPSL----KNGILIAPLSTLMHRTAPADFIAGNCF 131

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +KIGD++    L   L    Y   +  +  G + + G  I++FP+  E   +R+ +F N
Sbjct: 132 DIKIGDTINPDALRKQLTDAGYHAVETVLEHGEYAIRGSIIDLFPTGSEH-PFRIELFDN 190

Query: 356 DIEEISEFYPLTGQKIRNVETIKI 379
           +IE +  F P + + I  +E I +
Sbjct: 191 EIETLRTFDPESQRSIEKIEAINL 214


>gi|75760678|ref|ZP_00740704.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228898976|ref|ZP_04063254.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 4222]
 gi|74491828|gb|EAO55018.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228860669|gb|EEN05051.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 4222]
          Length = 521

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 363

Query: 710 KQLE 713
            ++E
Sbjct: 364 DRME 367


>gi|332234337|ref|XP_003266368.1| PREDICTED: interferon-induced helicase C domain-containing protein
           1 [Nomascus leucogenys]
          Length = 976

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 12/132 (9%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ E+I   R GK ++L+   +  EGLDI EC +V      + G + ++ +++Q  GR A
Sbjct: 721 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 774

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEVIDPI 736
           R   S  +L A + +  I+    ET     +++ +   H   N+ P+    KI+E+    
Sbjct: 775 RADESTYVLVAHSGSGVIE---RETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQS 831

Query: 737 LLEDAATTNISI 748
           ++E    T  SI
Sbjct: 832 IMEKKMKTKRSI 843


>gi|168484888|ref|ZP_02709833.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           CDC1873-00]
 gi|172041962|gb|EDT50008.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           CDC1873-00]
          Length = 671

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H ++K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|258514450|ref|YP_003190672.1| ATP-dependent DNA helicase RecG [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778155|gb|ACV62049.1| ATP-dependent DNA helicase RecG [Desulfotomaculum acetoxidans DSM
           771]
          Length = 692

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +  V  +H  +K+  + E++   RLG+ D LV   ++  G+D+P   ++ ILDAD+ G  
Sbjct: 509 DFSVGLLHGRMKSELKEEVMTKFRLGEIDALVTTTVIEVGVDVPNATVMVILDADRFGL- 567

Query: 666 RSKTSLIQTIGRAARNV-NSKVILYADTIT 694
                L Q  GR  R +  S  IL A+  T
Sbjct: 568 ---AQLHQLRGRVGRGLEQSYCILVANPKT 594


>gi|315127929|ref|YP_004069932.1| ATP-dependent DNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315016442|gb|ADT69780.1| ATP-dependent DNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 673

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 50/247 (20%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           L+ +DE H          R   H++ +L E G R   C               P  +V++
Sbjct: 373 LIIIDEQH----------RFGVHQRLSLREKG-RFGDCY--------------PHQLVMT 407

Query: 530 ATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAA-QQGLRI 585
           ATP    L       +E  +    P G   P   +    T+ +D+   + LA  +QG ++
Sbjct: 408 ATPIPRTLAMTAYADLETSVIDELPPGRT-PITTVAIPDTRRDDIISRVKLACNEQGRQV 466

Query: 586 LLT--------VLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                      VL  + AED    L E L E NI +  +H  +K  E+  I+ + + G  
Sbjct: 467 YWVCTLIDESEVLQCQAAEDSALQLKEALPELNIGL--VHGRMKATEKQAIMSEFKTGNI 524

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYAD 691
            VLV   ++  G+D+P   L+ I + ++ G       L Q  GR  R   +   V+LY  
Sbjct: 525 HVLVATTVIEVGVDVPNASLIIIENPERLGL----AQLHQLRGRVGRGATASHCVLLYHA 580

Query: 692 TITKSIQ 698
            ++ + Q
Sbjct: 581 PLSHTAQ 587


>gi|298492538|ref|YP_003722715.1| type III restriction protein res subunit ['Nostoc azollae' 0708]
 gi|298234456|gb|ADI65592.1| type III restriction protein res subunit ['Nostoc azollae' 0708]
          Length = 479

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 16/127 (12%)

Query: 574 EINLAAQQGLRILLTVLTKR--------MAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           EI L     LRIL+ +L +          A++ T Y   +++ +  +  +    ER EI+
Sbjct: 315 EIALGTDGKLRILMDLLAEHYPARVLIFTADNATVYRISQDLLIPAITHQTPVKERHEIL 374

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NV- 682
              + G+++ LV  ++L EG+D+P   +  IL         S    IQ +GR  R  N+ 
Sbjct: 375 TKFKEGEYNTLVASHVLNEGVDVPAASIAIILSGTG-----SAREYIQRLGRVLRKGNIE 429

Query: 683 NSKVILY 689
           N + ILY
Sbjct: 430 NKQAILY 436


>gi|154490238|ref|ZP_02030499.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC
           43184]
 gi|154089130|gb|EDN88174.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC
           43184]
          Length = 427

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 9/104 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   ++L   L      V  MHS+++  +R E++++ + G+ D+LV  +++ 
Sbjct: 246 RVIIFSSSKMKVKELASTLKRMKFNVAAMHSDLEQSQREEVMKEFKNGRIDILVATDVVS 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSK 685
            G+DI +  LV   D   D E +       +  IGR AR  N +
Sbjct: 306 RGIDINDIKLVINFDIPHDPEDY-------VHRIGRTARGTNGE 342


>gi|58268226|ref|XP_571269.1| p68-like protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|74684726|sp|Q5KFM6|DBP2_CRYNE RecName: Full=ATP-dependent RNA helicase DBP2-A
 gi|57227504|gb|AAW43962.1| p68-like protein, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 540

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +Q+  ++L+ V TKR+A+DLT++L         +H + +  ER  ++ + + G+  +++ 
Sbjct: 353 SQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLA 412

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            ++   GLD+ + G V   D     F  +    I  IGR  R
Sbjct: 413 TDVASRGLDVRDIGYVINYD-----FPNNCEDYIHRIGRTGR 449


>gi|58268224|ref|XP_571268.1| p68-like protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|57227503|gb|AAW43961.1| p68-like protein, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 527

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +Q+  ++L+ V TKR+A+DLT++L         +H + +  ER  ++ + + G+  +++ 
Sbjct: 340 SQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLA 399

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            ++   GLD+ + G V   D     F  +    I  IGR  R
Sbjct: 400 TDVASRGLDVRDIGYVINYD-----FPNNCEDYIHRIGRTGR 436


>gi|325286644|ref|YP_004262434.1| transcription-repair coupling factor [Cellulophaga lytica DSM 7489]
 gi|324322098|gb|ADY29563.1| transcription-repair coupling factor [Cellulophaga lytica DSM 7489]
          Length = 1113

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 102/242 (42%), Gaps = 24/242 (9%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           I   EK   L G+TGS  +F +++  +    P +V+  +K  AA         +  N +E
Sbjct: 23  IAKNEKNTTLTGLTGSALSFVISETFKEADTPFLVVFSDKEEAA---------YHLNDLE 73

Query: 224 YFVSYYD-YYQPEAYVPRTDTYIEKESSIN-----EQIDRMRHSATRSLLERNDCIVVSS 277
             V   D  + P +Y  R    I++  + N     E ++R+      +LL      V   
Sbjct: 74  QLVGEKDVLFYPGSY--RRPYQIDEVDNANVLLRAEVLNRINSRKKPALL------VTYP 125

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            +    + + +   +  +++K+ D++    L   L + ++KR D     G F V G  ++
Sbjct: 126 DALFEKVVTRKELDKNTLKIKVDDTITLDFLNEVLFEYKFKRVDFVTEPGEFSVRGGIVD 185

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           +F S   DV +R+  FG++++ I  F   T      V  I I  N        T  + +K
Sbjct: 186 VF-SFSNDVPYRIEFFGDEVDSIRTFDVETQLSTDKVTKITIVPNVENKFLDETRESFLK 244

Query: 398 YI 399
           YI
Sbjct: 245 YI 246


>gi|307566011|ref|ZP_07628469.1| putative ATP-dependent RNA helicase RhlE [Prevotella amnii CRIS
           21A-A]
 gi|307345199|gb|EFN90578.1| putative ATP-dependent RNA helicase RhlE [Prevotella amnii CRIS
           21A-A]
          Length = 567

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 74/147 (50%), Gaps = 6/147 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K+  + +T  L ++NI+   MHS++   +R +++   +  + DVLV  +++ 
Sbjct: 247 RVIIFSGSKQKVKKITASLNKQNIKCGEMHSDLDQAQRDDVMFKFKSSQIDVLVATDIVA 306

Query: 644 EGLDIPECGLVAILDA--DKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            G+DI +  +V   D   D E ++    +T+     G A   V+ + I Y   I   ++ 
Sbjct: 307 RGIDIDDIAMVINYDVPHDVEDYVHRIGRTARADREGNAITFVSEEDIYYFRHIESFLKK 366

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVK 726
            ID+  +   K L    K+N N ++V+
Sbjct: 367 TIDK--KPLPKSLGEGPKYNFNSKAVR 391


>gi|255731175|ref|XP_002550512.1| eukaryotic initiation factor 4A-12 [Candida tropicalis MYA-3404]
 gi|240132469|gb|EER32027.1| eukaryotic initiation factor 4A-12 [Candida tropicalis MYA-3404]
          Length = 399

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD  NL   Q +   +   TK     LT+ + ++N  V  MH ++K  ER  I+ D R
Sbjct: 258 DLYD--NLTITQAV---IFCNTKLKVNWLTDQMRKQNFTVVSMHGDMKQDERESIMNDFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D   DKE +       I  IGR+ R
Sbjct: 313 TGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENY-------IHRIGRSGR 358


>gi|154147577|ref|NP_001093664.1| interferon-induced helicase C domain-containing protein 1 [Sus
           scrofa]
 gi|152148442|gb|ABS29718.1| melanoma differentiation associated protein-5 [Sus scrofa]
          Length = 1023

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 6/113 (5%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ E+I   R GK ++L+   +  EGLDI EC +V      + G + ++ +++Q  GR A
Sbjct: 767 EQREVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 820

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           R   S  +L A + +  I+       R +      ++  N+ P+    KI+E+
Sbjct: 821 RADESTYVLVAQSGSGVIERETVNDFREKMMYKAIDRVQNMKPEEYAHKILEL 873


>gi|124430723|ref|NP_001037582.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
 gi|95102742|gb|ABF51312.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
          Length = 539

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 18/123 (14%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY------MHSEVKTLERIEIIRD 627
           EI  + + G + ++ V TKR AE+++     RNIR RY      MH +    ER E++  
Sbjct: 348 EIGQSQEPGAKTIIFVETKRKAENIS-----RNIR-RYGWPAVCMHGDKTQQERDEVLYQ 401

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + G+  +LV  ++   GLD+   G+  +++ D   +  S    I  IGR  R+  SK  
Sbjct: 402 FKEGRASILVATDVAARGLDVD--GIKYVINFD---YPNSSEDYIHRIGRTGRS-KSKGT 455

Query: 688 LYA 690
            YA
Sbjct: 456 SYA 458


>gi|119025662|ref|YP_909507.1| transcription-repair coupling factor [Bifidobacterium adolescentis
           ATCC 15703]
 gi|118765246|dbj|BAF39425.1| transcription-repair coupling factor [Bifidobacterium adolescentis
           ATCC 15703]
          Length = 1188

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 70/163 (42%), Gaps = 32/163 (19%)

Query: 222 VEYFVSYYD-----YYQPEAY--------VPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           VE   S+YD       Q EA+         PR DT   + +       R++H    S L 
Sbjct: 88  VESIRSWYDGDPNDVAQLEAWETLPHERLSPRADTVASRMAVFR----RLKHPEEGSTLF 143

Query: 269 RNDCIVVSSV-----SCIYGIGSVES--YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
               I+V  V       + G+G VE   +SQ       G+ +   E    LV+  Y R D
Sbjct: 144 GPIRILVMPVRSLIQPVVAGLGDVEPLVFSQ-------GEELLLDEASRKLVENAYTRVD 196

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + + RG F V G  I++FP  L     R+  FG++I+ I EF+
Sbjct: 197 LVMDRGEFAVRGGIIDVFPPTLPHPV-RIEFFGDEIDTIREFH 238


>gi|116495097|ref|YP_806831.1| ATP-dependent DNA helicase RecG [Lactobacillus casei ATCC 334]
 gi|116105247|gb|ABJ70389.1| ATP-dependent DNA helicase RecG [Lactobacillus casei ATCC 334]
 gi|327382643|gb|AEA54119.1| DNA helicase RecG [Lactobacillus casei LC2W]
 gi|327385837|gb|AEA57311.1| DNA helicase RecG [Lactobacillus casei BD-II]
          Length = 718

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H ++K  E+ +I+R    GK  VLV   ++  G+DIP   ++AI DAD+ G     
Sbjct: 541 VALLHGQMKPDEKDQIMRAFSDGKIAVLVSTTVVEVGVDIPNATVMAIFDADRFGL---- 596

Query: 669 TSLIQTIGRAARNVN-SKVILYAD 691
           + L Q  GR  R    ++ +L AD
Sbjct: 597 SQLHQLRGRVGRGQKAAQCLLIAD 620



 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 3/100 (3%)

Query: 560 EIRSARTQVEDV--YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T V  +  Y  +    Q  L +   VL ++    LT+   +  +++  +     
Sbjct: 322 DVGSGKTVVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTS 381

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           T +R E++ +LR G+ ++++G + L+++G+D    GLV I
Sbjct: 382 TKKRRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVI 421


>gi|302798402|ref|XP_002980961.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii]
 gi|300151500|gb|EFJ18146.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii]
          Length = 653

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+   TK   E+L ++L +   +V  +H +     R+++++  + G+F VLV  ++   
Sbjct: 431 VLVFASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVLVATDVAAR 490

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDI     V   D  K+       + +  +GR  R  + + + Y     K  + A D
Sbjct: 491 GLDIKSIKTVVNYDTAKD-----MDTHVHRVGRTGRAGDKEGVAYTLVTQKEARFAGD 543


>gi|293366145|ref|ZP_06612832.1| transcription-repair coupling factor [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319739|gb|EFE60098.1| transcription-repair coupling factor [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329737888|gb|EGG74116.1| transcription-repair coupling factor [Staphylococcus epidermidis
           VCU045]
          Length = 1166

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 91/181 (50%), Gaps = 15/181 (8%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK+G  ++    L+ LV   Y+R+ +    G F + G  I+I+P  L     R+ +F  +
Sbjct: 138 LKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGTPVRIELFDTE 195

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           ++ I +F   T +   N+  ++I   S Y+      +  +++++ ELK +  E  +  ++
Sbjct: 196 VDSIRDFDVETQRSNDNINQVEITTASDYIIT----DEVIQHLQNELK-KAYEYTRP-KI 249

Query: 417 LEAQRLEQRITYD-LEMLETT-GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
            ++ R + + TY+  ++ E+T    Q +  +  ++      E P TL +Y  +++++ VD
Sbjct: 250 EKSVRNDLKETYESFKLFESTFFDHQLLRRFVSFMY-----EKPSTLIDYFQKNAIIVVD 304

Query: 475 E 475
           E
Sbjct: 305 E 305


>gi|257815096|gb|ACV69940.1| vasa [Osphronemus goramy]
          Length = 653

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 472 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 531

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDIP+   V   D        +    +  IGR  R  N+
Sbjct: 532 RGLDIPDVQHVVNFD-----LPSNIDEYVHRIGRTGRCGNT 567


>gi|256860906|gb|ACV32355.1| vasa [Nibea mitsukurii]
          Length = 640

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  YL +  +    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 456 RTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 515

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+P+   V   D        +    +  IGR  R  N+
Sbjct: 516 RGLDVPDVLNVVSFD-----LPNNIDEYVHRIGRTGRCGNT 551


>gi|207367146|dbj|BAG72093.1| vasa [Trachurus japonicus]
          Length = 657

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 10/122 (8%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           S R Q+ D+     L A    R ++ V TKR A+ +  +L +  I    +H + +  ER 
Sbjct: 457 SKREQLVDL-----LKATGSERTMVFVETKRQADFIATFLSQTKIPTTSIHGDREQRERE 511

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           + + D R GK  VLV  ++   GLDIP+   V   D        +    +  IGR  R  
Sbjct: 512 QALADFRSGKCPVLVATSVAARGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCG 566

Query: 683 NS 684
           N+
Sbjct: 567 NT 568


>gi|46484671|gb|AAS98242.1| excinuclease ABC subunit B [Listonella anguillarum]
          Length = 110

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 22/109 (20%)

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK---- 757
           DET RRREKQ  HN++  I PQ++K  + ++++   L D   +      +Q+ LSK    
Sbjct: 1   DETDRRREKQQAHNEEQGITPQALKRNVKDIME---LGDITKSKQQRMNKQVPLSKVAES 57

Query: 758 ------------KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                       +K  A L+ L   M+  A NL FE AA  RD+I++L+
Sbjct: 58  SQTYEIFTPLQLEKEIAKLEGL---MYKHAQNLEFELAAEKRDQIEKLR 103


>gi|268573086|ref|XP_002641520.1| Hypothetical protein CBG09816 [Caenorhabditis briggsae]
          Length = 628

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A DL  YL  +N +V  +H ++K  ER + +   R G   +LV   +   G
Sbjct: 424 LVFVETKRGASDLAYYLNRQNYQVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARG 483

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D  +D + ++    +T  +  +G A    N K
Sbjct: 484 LDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDK 527


>gi|112983588|ref|NP_001037347.1| vasa-like [Bombyx mori]
 gi|1944405|dbj|BAA19572.1| BmVLG [Bombyx mori]
          Length = 601

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 17/144 (11%)

Query: 561 IRSARTQVEDVYDEIN-----------LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           +  A T VE ++ E+            +    G RIL+ V TKR A+ +   L E+ +  
Sbjct: 399 VGGASTDVEQIFIEVTKYEKRNSLKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLT 458

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H +    ER E +++ + GK  +LV   +   GLDI    +V   D  K     S  
Sbjct: 459 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPK-----SID 513

Query: 670 SLIQTIGRAARNVN-SKVILYADT 692
             +  IGR  R  N  K + + D+
Sbjct: 514 EYVHRIGRTGRVGNRGKAVSFYDS 537


>gi|318054604|ref|NP_001187599.1| eukaryotic initiation factor 4a-iii [Ictalurus punctatus]
 gi|308323464|gb|ADO28868.1| eukaryotic initiation factor 4a-iii [Ictalurus punctatus]
          Length = 389

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 248 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 302

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 303 SGASRVLISTDVWAGGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 348


>gi|296876849|ref|ZP_06900897.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           15912]
 gi|296432351|gb|EFH18150.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           15912]
          Length = 523

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNVDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|291444983|ref|ZP_06584373.1| ATP-dependent helicase [Streptomyces roseosporus NRRL 15998]
 gi|291347930|gb|EFE74834.1| ATP-dependent helicase [Streptomyces roseosporus NRRL 15998]
          Length = 944

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           AR  V+ V D++       +R L   ++   A  + ++     +    +  E    ER  
Sbjct: 442 ARLVVQAVKDKVT--DPDSMRALGFCVSVAHAHFMADFFRRAGLNAVALSGETPAHERKA 499

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            + DLR G   V+  ++L  EGLDIP+   + +L         S T  +Q +GR  R   
Sbjct: 500 ALDDLRSGALQVIFSVDLFNEGLDIPDVDTLLLLRPTS-----SATVFLQQLGRGLRRTE 554

Query: 684 SKVIL 688
            K +L
Sbjct: 555 DKAVL 559


>gi|291165177|gb|ADD81193.1| vasa [Auxis rochei]
          Length = 627

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 447 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 506

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDIP+   V   D        +    +  IGR  R  N+
Sbjct: 507 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNT 542


>gi|238852577|ref|ZP_04642987.1| ATP-dependent DNA helicase RecG [Lactobacillus gasseri 202-4]
 gi|238834723|gb|EEQ26950.1| ATP-dependent DNA helicase RecG [Lactobacillus gasseri 202-4]
          Length = 679

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 6/89 (6%)

Query: 595 AEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           AEDL   L  Y ++  V  +H ++K  ++ EI+     GK D+LV  +++  G+D+P   
Sbjct: 488 AEDLQARLAHYFKDENVVLLHGQMKGDQKNEIMDSFAAGKIDILVTTSVIEVGVDVPNAN 547

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
           ++ I +AD+ G     + L Q  GR  R 
Sbjct: 548 MMVIFNADRFGL----SQLHQLRGRIGRG 572


>gi|227514331|ref|ZP_03944380.1| transcription-repair coupling factor [Lactobacillus fermentum ATCC
           14931]
 gi|227087303|gb|EEI22615.1| transcription-repair coupling factor [Lactobacillus fermentum ATCC
           14931]
          Length = 1180

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 41/237 (17%), Positives = 103/237 (43%), Gaps = 16/237 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A +++ + I S ++ QL+ GV+GS KT  +A +   +  P +V+  +     +L ++
Sbjct: 9   QQPAFSKIKEVIDSGQR-QLITGVSGSAKTLLLAALQGELSHPQLVVCDSLYHMQELVAD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            +N    + V  F             P  +    + ++ +      R  A  +LL     
Sbjct: 68  LENLLGEDQVFAF-------------PVEEVLATEVATASPDYRLQRVQALNTLLADQAA 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           +VV+  + +   +     +    + +++G  ++   + + L+   Y+RQ + +  G F +
Sbjct: 115 VVVTDAAGLRRRLPKPGDFQAATLTVEVGGELDPTTVGTQLMAMGYQRQKMVLKPGDFAM 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
            G  ++I+  +      R+ +F  +++ +  F   + + + N+  + I   + ++ P
Sbjct: 175 RGSIVDIYALNTAH-PVRIDLFDTEVDSLRYFDAESQRSVENIRAVTILPATDFIAP 230



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R+   L E + E   R+ Y+H ++   E   ++ D   G++DVLV  +++  G+DI   
Sbjct: 842 ERVVAQLAELVPE--ARIGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANV 899

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + + DAD+ G       L Q  GR  R+
Sbjct: 900 NTLFVEDADRLGL----AQLYQIRGRIGRS 925


>gi|163841705|ref|YP_001626109.1| transcription-repair coupling factor [Renibacterium salmoninarum
           ATCC 33209]
 gi|162955181|gb|ABY24696.1| transcription-repair coupling factor [Renibacterium salmoninarum
           ATCC 33209]
          Length = 1278

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 18/160 (11%)

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L +  + + P +AV  F S+ +    E   PR+DT   + S +     R++H    +   
Sbjct: 151 LVAALRAYLPEDAVADFPSW-ETLPHELLSPRSDTVGRRLSVLR----RLKHGGMGTTGP 205

Query: 269 RNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
               IVV+ V  +      G+  +E      V+L IG      +++  L    Y R D+ 
Sbjct: 206 LR--IVVAPVRAVVQPIVQGLADLEP-----VELSIGQRAPFDQVIRRLADAAYARVDMV 258

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
             RG F V G  I++FP   +    R+  FG+++E +  F
Sbjct: 259 THRGEFAVRGGIIDVFPP-TDPHPVRIEFFGDELESMRWF 297


>gi|313889481|ref|ZP_07823128.1| putative ComF operon protein 1 [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313122151|gb|EFR45243.1| putative ComF operon protein 1 [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 433

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N ++ Y+ S+  T +R E+I D R G   +LV   +L  G+  P   +  +L       L
Sbjct: 327 NHQIGYVSSQ--TAKRKELIEDFRQGSLSILVTTTILERGVTFPGVDVFVVLAHHH---L 381

Query: 666 RSKTSLIQTIGRAARNV---NSKVILYADTITKSIQLAIDE 703
            + +SLIQ  GR  R++   N KVI + + ++ ++  A  E
Sbjct: 382 FTSSSLIQIAGRVGRSIDRPNGKVIFFHEGVSSAMYKARKE 422


>gi|239941537|ref|ZP_04693474.1| ATP-dependent helicase [Streptomyces roseosporus NRRL 15998]
          Length = 1045

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           AR  V+ V D++       +R L   ++   A  + ++     +    +  E    ER  
Sbjct: 543 ARLVVQAVKDKVT--DPDSMRALGFCVSVAHAHFMADFFRRAGLNAVALSGETPAHERKA 600

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            + DLR G   V+  ++L  EGLDIP+   + +L         S T  +Q +GR  R   
Sbjct: 601 ALDDLRSGALQVIFSVDLFNEGLDIPDVDTLLLLRPTS-----SATVFLQQLGRGLRRTE 655

Query: 684 SKVIL 688
            K +L
Sbjct: 656 DKAVL 660


>gi|116513187|ref|YP_812094.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116108841|gb|ABJ73981.1| ATP-dependent DNA helicase RecG [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 681

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           ++  +H ++K  E+ +I+++ +  K D+LV   ++  G+D+P   ++ I+DAD+ G    
Sbjct: 512 KIGLLHGKMKNDEKDQIMQEFKAKKLDILVSTTVIEVGVDVPNATIMVIMDADRFGL--- 568

Query: 668 KTSLIQTIGRAARNV-NSKVILYAD 691
            + L Q  GR  R    S  IL A+
Sbjct: 569 -SQLHQLRGRVGRGTKKSYAILVAN 592


>gi|257870553|ref|ZP_05650206.1| ATP-dependent DNA helicase RecG [Enterococcus gallinarum EG2]
 gi|257804717|gb|EEV33539.1| ATP-dependent DNA helicase RecG [Enterococcus gallinarum EG2]
          Length = 681

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 19/154 (12%)

Query: 551 PTGLVDPPVEIRSART-QVEDVYDEINLAAQQGLRILLT--------VLTKRMAEDLTEY 601
           P G +  PVE R  R  Q+E V D       +G ++ +         +L  + A ++ E 
Sbjct: 436 PAGRI--PVETRWVRPPQLESVLDWARQELAKGHQMYVICPLIEESEMLDVKNATEIYEQ 493

Query: 602 L---YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           L   +  N +V  +H ++K +E+ EI+ + +  +  +LV   ++  G+++P   ++ I+D
Sbjct: 494 LQAYFAPNYQVGILHGKMKNIEKDEIMEEFKDNQLQILVSTTVIEVGVNVPNATVMLIID 553

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVN-SKVILYAD 691
           AD+ G       L Q  GR  R  + S  IL A+
Sbjct: 554 ADRFGL----AQLHQLRGRVGRGADASYCILVAN 583


>gi|242243744|ref|ZP_04798188.1| helicase [Staphylococcus epidermidis W23144]
 gi|242232842|gb|EES35154.1| helicase [Staphylococcus epidermidis W23144]
          Length = 949

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 7/125 (5%)

Query: 563 SARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  +VE +  + N     G  L+ L+ V ++  A  L   L +R I    +  +     
Sbjct: 427 ASNERVEHIIKKTNYYGYSGDALKGLIFVSSREEAYQLANQLSKRGISSVGLTGKDSIAY 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E I+ L+ G  + ++ ++L  EG+DIPE   V +L   K   +      IQ +GR  R
Sbjct: 487 RTETIQQLKEGSINYIITVDLFNEGIDIPEINQVVMLRPTKSSII-----FIQQLGRGLR 541

Query: 681 NVNSK 685
             N+K
Sbjct: 542 KSNNK 546


>gi|149730873|ref|XP_001494380.1| PREDICTED: similar to interferon induced with helicase C domain 1
           [Equus caballus]
          Length = 1022

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 24/185 (12%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERN----IRVRYMH-------SEVKTL---ERIEII 625
           ++  R ++   T++ A  L++++ E      + V+  H       SE K +   E+ E+I
Sbjct: 712 EESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVI 771

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R GK ++L+   +  EGLDI EC +V      + G + ++ +++Q  GR AR   S 
Sbjct: 772 SKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-ARADEST 825

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAAT 743
            +L A + +  ++   +     REK +     H  N+ P+    KI E+    ++E    
Sbjct: 826 YVLVAHSGSGVVER--ETVNAFREKMMYKAIDHVQNMKPEEYAHKIWELQMQSIMEKKMK 883

Query: 744 TNISI 748
           T  SI
Sbjct: 884 TKRSI 888


>gi|145224791|ref|YP_001135469.1| ATP-dependent DNA helicase RecG [Mycobacterium gilvum PYR-GCK]
 gi|145217277|gb|ABP46681.1| ATP-dependent DNA helicase RecG [Mycobacterium gilvum PYR-GCK]
          Length = 753

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  MH  +   E+  ++   R G  DVLV   ++  G+D+P   ++ ++DAD+ G  
Sbjct: 572 GVRLGLMHGRLSGDEKDAVMAAFRAGDIDVLVCTTVIEVGVDVPNATVMVVMDADRFGI- 630

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKS 696
              + L Q  GR  R  +  + L A  + +S
Sbjct: 631 ---SQLHQLRGRIGRGEHPSLCLLATNLPES 658


>gi|306819140|ref|ZP_07452854.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239]
 gi|304648116|gb|EFM45427.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239]
          Length = 523

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 15/146 (10%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E+V   I  A  +GL I+ T  TKR  + L + L  R      +H ++    R   +R  
Sbjct: 271 EEVVARILQAKNRGLTIIFT-RTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAF 329

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           R GK DVLV  ++   G+D+ +   V   +  ++     + + I  IGR AR  +S   +
Sbjct: 330 RHGKVDVLVATDVAARGIDVDDVTHVINFECPED-----EKTYIHRIGRTARAGHSGTAV 384

Query: 688 LYAD--------TITKSIQLAIDETT 705
            + D         I ++++L ++  T
Sbjct: 385 TFVDWESVTRWRVINRALELGLENPT 410


>gi|296202918|ref|XP_002748670.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 2
           [Callithrix jacchus]
          Length = 661

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+IR  R G  ++LV  ++  EGLDIP+C +V      + G L ++ S++Q  GRA
Sbjct: 405 EVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVV-----RYGLLTNEISMVQARGRA 455


>gi|296202916|ref|XP_002748669.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 1
           [Callithrix jacchus]
          Length = 678

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+IR  R G  ++LV  ++  EGLDIP+C +V      + G L ++ S++Q  GRA
Sbjct: 422 EVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVV-----RYGLLTNEISMVQARGRA 472


>gi|257462680|ref|ZP_05627089.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D12]
 gi|317060328|ref|ZP_07924813.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D12]
 gi|313686004|gb|EFS22839.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D12]
          Length = 680

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 17/122 (13%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           K++ E L++Y    NI +  +H  +K+ E+ EI+R  +  + D+LV   ++  G+D+P  
Sbjct: 494 KKIREKLSDY----NISI--LHGRMKSAEKEEIMRQFQQKEIDILVSTTVIEVGIDVPNA 547

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
            ++ IL+A++ G     ++L Q  GR  R  NS    +  + T+      +E++++R K 
Sbjct: 548 VIMTILNAERFGL----SALHQLRGRVGRG-NSASFCFLISKTQ------NESSKQRLKI 596

Query: 712 LE 713
           +E
Sbjct: 597 ME 598


>gi|302901921|ref|XP_003048541.1| hypothetical protein NECHADRAFT_95770 [Nectria haematococca mpVI
           77-13-4]
 gi|256729474|gb|EEU42828.1| hypothetical protein NECHADRAFT_95770 [Nectria haematococca mpVI
           77-13-4]
          Length = 1381

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 7/87 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+ D R G  ++LV  ++L EG+D+P C LVA  D        +  S IQ  GR AR  
Sbjct: 432 QILEDFRSGVVNLLVATSVLEEGIDVPACNLVACFDETT-----TLKSFIQRRGR-ARMQ 485

Query: 683 NSKVILYADTITKSIQL-AIDETTRRR 708
            SK+I    ++T S     ++E  +RR
Sbjct: 486 ESKMIAMESSLTSSRTWEELEEGMKRR 512


>gi|229188506|ref|ZP_04315550.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           10876]
 gi|228594969|gb|EEK52744.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           10876]
          Length = 528

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 363

Query: 710 KQLE 713
            ++E
Sbjct: 364 DRME 367


>gi|116629428|ref|YP_814600.1| RecG-like helicase [Lactobacillus gasseri ATCC 33323]
 gi|116095010|gb|ABJ60162.1| ATP-dependent DNA helicase RecG [Lactobacillus gasseri ATCC 33323]
          Length = 679

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 6/89 (6%)

Query: 595 AEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           AEDL   L  Y ++  V  +H ++K  ++ EI+     GK D+LV  +++  G+D+P   
Sbjct: 488 AEDLQARLAHYFKDENVVLLHGQMKGDQKNEIMDSFAAGKIDILVTTSVIEVGVDVPNAN 547

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
           ++ I +AD+ G     + L Q  GR  R 
Sbjct: 548 MMVIFNADRFGL----SQLHQLRGRIGRG 572


>gi|317507153|ref|ZP_07964911.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
 gi|316254555|gb|EFV13867.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
          Length = 530

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 22/167 (13%)

Query: 558 PVEI--RSARTQVEDVYDEINLAAQQGLRILLT--------------VLTKRMAEDLTEY 601
           PVE+  ++A T  E++     L A      LLT              V TK+  E+L E 
Sbjct: 208 PVEVTVKAATTTSENIEQRYTLVAHHRKLDLLTRILEVEPFSAMIVFVRTKQATEELAER 267

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L  R    R ++ ++    R   +  LR GK D+LV  ++   GLD+     V   DA  
Sbjct: 268 LRARGFAARPLNGDIPQAARERTVSALREGKIDILVATDVAARGLDVERITHVFNYDAPH 327

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDETTRR 707
           +       S +  IGR  R   + V  L+     +S+  AI+  TR+
Sbjct: 328 D-----TESYVHRIGRTGRAGRTGVSYLFVTPRERSMIGAIERATRQ 369


>gi|306829933|ref|ZP_07463120.1| DNA helicase RecG [Streptococcus mitis ATCC 6249]
 gi|304427944|gb|EFM31037.1| DNA helicase RecG [Streptococcus mitis ATCC 6249]
          Length = 671

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H ++K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|315445121|ref|YP_004078000.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. Spyr1]
 gi|315263424|gb|ADU00166.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. Spyr1]
          Length = 753

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  MH  +   E+  ++   R G  DVLV   ++  G+D+P   ++ ++DAD+ G  
Sbjct: 572 GVRLGLMHGRLSGDEKDAVMAAFRAGDIDVLVCTTVIEVGVDVPNATVMVVMDADRFGI- 630

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKS 696
              + L Q  GR  R  +  + L A  + +S
Sbjct: 631 ---SQLHQLRGRIGRGEHPSLCLLATNLPES 658


>gi|309361539|emb|CAP29366.2| CBR-LAF-1 protein [Caenorhabditis briggsae AF16]
          Length = 653

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A DL  YL  +N +V  +H ++K  ER + +   R G   +LV   +   G
Sbjct: 449 LVFVETKRGASDLAYYLNRQNYQVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARG 508

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D  +D + ++    +T  +  +G A    N K
Sbjct: 509 LDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDK 552


>gi|325130353|gb|EGC53119.1| transcription-repair coupling factor [Neisseria meningitidis
           OX99.30304]
          Length = 1292

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 17/212 (8%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L + L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            V  I++     +    PT N A K  +   +
Sbjct: 200 PVSEIRLLPAHEF----PTDNEAQKIFRSRFR 227



 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 983  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1039

Query: 668  KTSLIQTIGRAARN 681
               L Q  GR  R+
Sbjct: 1040 -AQLHQLRGRVGRS 1052


>gi|229015638|ref|ZP_04172628.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
 gi|229021830|ref|ZP_04178406.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
 gi|228739470|gb|EEL89890.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
 gi|228745658|gb|EEL95670.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
          Length = 530

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 363

Query: 710 KQLE 713
            ++E
Sbjct: 364 DRME 367


>gi|227875859|ref|ZP_03993985.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
 gi|269977494|ref|ZP_06184466.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1]
 gi|307700011|ref|ZP_07637060.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus
           mulieris FB024-16]
 gi|227843607|gb|EEJ53790.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
 gi|269934410|gb|EEZ90972.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1]
 gi|307614772|gb|EFN93992.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus
           mulieris FB024-16]
          Length = 523

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 15/146 (10%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E+V   I  A  +GL I+ T  TKR  + L + L  R      +H ++    R   +R  
Sbjct: 271 EEVVARILQAKNRGLTIIFT-RTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAF 329

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           R GK DVLV  ++   G+D+ +   V   +  ++     + + I  IGR AR  +S   +
Sbjct: 330 RHGKVDVLVATDVAARGIDVDDVTHVINFECPED-----EKTYIHRIGRTARAGHSGTAV 384

Query: 688 LYAD--------TITKSIQLAIDETT 705
            + D         I ++++L ++  T
Sbjct: 385 TFVDWESVTRWRVINRALELGLENPT 410


>gi|167763057|ref|ZP_02435184.1| hypothetical protein BACSTE_01423 [Bacteroides stercoris ATCC
           43183]
 gi|167699397|gb|EDS15976.1| hypothetical protein BACSTE_01423 [Bacteroides stercoris ATCC
           43183]
          Length = 430

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 9/114 (7%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            A Q   R+++   +K   +++ + L +  + V  MHS+++  +R E++ + + G+ ++L
Sbjct: 239 FAEQTPERVIIFASSKLKVKEVAKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINIL 298

Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  +++  G+DI +  LV   D   D E +       +  IGR AR  N  V L
Sbjct: 299 VATDIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAL 345


>gi|145613028|ref|XP_362776.2| hypothetical protein MGG_08272 [Magnaporthe oryzae 70-15]
 gi|145020089|gb|EDK04317.1| hypothetical protein MGG_08272 [Magnaporthe oryzae 70-15]
          Length = 584

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+  L K+ A  +   L  + IRV  +H ++K  +R   +   + GK  VLV  ++  
Sbjct: 422 RVLVFCLYKKEAVRVENNLQRKGIRVASIHGDLKQEQRTASLEAFKSGKTTVLVATDVAA 481

Query: 644 EGLDIPECGLV 654
            GLDIPE  LV
Sbjct: 482 RGLDIPEVKLV 492


>gi|307131510|ref|YP_003883526.1| transcription-repair coupling factor [Dickeya dadantii 3937]
 gi|306529039|gb|ADM98969.1| transcription-repair coupling factor [Dickeya dadantii 3937]
          Length = 1149

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 128/303 (42%), Gaps = 38/303 (12%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
           Q LLG +TG+      A+++E      +++ P+   A +L  E + F             
Sbjct: 16  QRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQQF------------- 62

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVE 288
              QP   +P  +T      S +++I   R S    L      +++  V+ +   +   E
Sbjct: 63  -TAQPVMTLPDWETLPYDSFSPHQEIISARLSTLYQLPSLTRGVLILPVNTLMQKVCPHE 121

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                 + LK G  + + +L + L +  Y+  D  +  G F   G  +++FP   E+  +
Sbjct: 122 FLHGHALMLKKGQRLSRDKLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEE-PF 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     +    PT  TA++  + + + +  
Sbjct: 181 RIDFFDDEIDSLRLFDADTQRTLNEVEQIHLLPAREF----PTDKTAIELFRSQWREQF- 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E+ ++     A+ + Q+++         G+  +   Y + L      +P P LF Y+P D
Sbjct: 236 EVRRD-----AEHVYQQVS--------KGTLPAGIEYWQPLFF---SQPLPALFSYLPTD 279

Query: 469 SLL 471
           +LL
Sbjct: 280 TLL 282


>gi|297273051|ref|XP_002800519.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like isoform 2
           [Macaca mulatta]
          Length = 661

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+IR  R G  ++LV  ++  EGLDIP+C +V      + G L ++ S++Q  GRA
Sbjct: 405 EVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVV-----RYGLLTNEISMVQARGRA 455


>gi|227528966|ref|ZP_03959015.1| helicase [Lactobacillus vaginalis ATCC 49540]
 gi|227351103|gb|EEJ41394.1| helicase [Lactobacillus vaginalis ATCC 49540]
          Length = 451

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 18/77 (23%), Positives = 40/77 (51%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            G + +L   +++ +  + +   +  I+  +  S+    ER  I+ D + GK  +L  ++
Sbjct: 214 NGRKTILYAHSRKYSAQIAQKFCDAGIKAVHCDSKTPAKERETIMSDFKAGKIKILCNVD 273

Query: 641 LLREGLDIPECGLVAIL 657
           L+ EG ++P+C  V +L
Sbjct: 274 LISEGFNVPDCSCVVML 290


>gi|322386426|ref|ZP_08060055.1| transcription-repair coupling factor [Streptococcus cristatus ATCC
           51100]
 gi|321269512|gb|EFX52443.1| transcription-repair coupling factor [Streptococcus cristatus ATCC
           51100]
          Length = 1167

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 47/233 (20%), Positives = 100/233 (42%), Gaps = 20/233 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G++ S K   +A  +E  Q   +V+  ++  A +L S+  +      V  F++   
Sbjct: 30  QLVMGLSASTKALAIASSLEE-QEKILVITSSQNEAERLASDLISLLGEEKVYTFLA--- 85

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                   P  +     +  I  +++ M   + +   E+N  ++++  +    +   + +
Sbjct: 86  -----DDTPLAEFVFSSQEKIFARLEAMNFLSDK---EKNGILIINVAASRLLLPQPDIF 137

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            +  + L +       +L+ SL +  YK+    + +G + + GD ++IF    +   +R+
Sbjct: 138 KKSELILSVSKEYNLDKLVKSLSRNGYKKVSQVLSQGEYSLRGDILDIFERSAQ-YPYRI 196

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI-------YANSHYVTPRPTLNTAM 396
             FG++I+ I  F P     + NVE I I       +    Y   R  L TA+
Sbjct: 197 EFFGDEIDGIRIFNPENQLSLENVEEILIEPVTDLLFTEEDYAKGRKNLETAL 249



 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  +     + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 853 IGYVHGQMSEVRLENTLLDFVNGEYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 908

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 909 STLYQLRGRVGR---SNRIAYA 927


>gi|312867114|ref|ZP_07727324.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
 gi|311097243|gb|EFQ55477.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
          Length = 536

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|296112376|ref|YP_003626314.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis RH4]
 gi|295920070|gb|ADG60421.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis RH4]
          Length = 577

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 5/114 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   TK   E L   L E   + RY+H ++   +R  I+ D++ GK D+LV  ++   G
Sbjct: 262 VIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDLLVATDVAARG 321

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +DI     V   D       R     +  IGR  R   + V +   +I  + QL
Sbjct: 322 IDISAISHVINYD-----LPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQL 370


>gi|229817916|ref|ZP_04448198.1| hypothetical protein BIFANG_03203 [Bifidobacterium angulatum DSM
           20098]
 gi|229784520|gb|EEP20634.1| hypothetical protein BIFANG_03203 [Bifidobacterium angulatum DSM
           20098]
          Length = 1198

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
            + G+G VE     +V +K G+ +   E +  LV+  Y R D+ + RG F V G  +++F
Sbjct: 170 VVAGLGDVEP----LVFVK-GEELPLDEAVERLVRNAYTRVDLVMNRGEFAVRGGILDVF 224

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFY 364
           P        R+  FG++I+EI EF+
Sbjct: 225 PPTYPHPV-RIEFFGDEIDEIREFH 248


>gi|297459091|ref|XP_001788313.2| PREDICTED: Fanconi anemia, complementation group M [Bos taurus]
          Length = 1449

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM----HSEVKTL------ERIEIIRDLRLGKF 633
           R+++    +   +++ E L      +R M    H+  K++      E++E+++  R G +
Sbjct: 83  RVMIFSSFRDSVQEIAEMLLPHQPIIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGY 142

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + LV   +  EGLDI E  L+   DA K     S   LIQ +GR  R    ++++
Sbjct: 143 NTLVSTCVGEEGLDIGEVDLIICFDAQK-----SPIRLIQRMGRTGRKRQGRIVV 192


>gi|158259343|dbj|BAF85630.1| unnamed protein product [Homo sapiens]
          Length = 1025

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 12/116 (10%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ E+I   R GK ++L+   +  EGLDI EC +V      + G + ++ +++Q  GR A
Sbjct: 770 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 823

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEV 732
           R   S  +L A + +  I+    ET     +++ +   H   N+ P+    KI+E+
Sbjct: 824 RADESTCVLVAHSGSGVIE---RETVNDFREKMMYKAIHCVQNMKPEEYAHKILEL 876


>gi|302815317|ref|XP_002989340.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii]
 gi|300142918|gb|EFJ09614.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii]
          Length = 653

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+   TK   E+L ++L +   +V  +H +     R+++++  + G+F VLV  ++   
Sbjct: 431 VLVFASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVLVATDVAAR 490

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDI     V   D  K+       + +  +GR  R  + + + Y     K  + A D
Sbjct: 491 GLDIKSIKTVVNYDTAKD-----MDTHVHRVGRTGRAGDKEGVAYTLVAQKEARFAGD 543


>gi|291556783|emb|CBL33900.1| transcription-repair coupling factor [Eubacterium siraeum V10Sc8a]
          Length = 1175

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 15/218 (6%)

Query: 164 IHSREKVQLLL-GVTGSGKTFTMAKVI-EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
           I S E V LL+ G++   K   +A +  E +  P +V+  ++  AA+L  +        A
Sbjct: 21  ILSDEPVPLLVTGLSHIHKAHFLASLCYEKLPSPVLVITESEASAAKLTEDINTMCGDTA 80

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
              F        P + +   DT  + +    ++I+ +    + +L  +   I+ SS + +
Sbjct: 81  AYQF--------PASDMTLADTEAQSQEYEYKRIETL----SAALSGKARLIISSSEAAV 128

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                 +   +  V LK GD ++  EL  +LV   Y R D+   +G F   G   +I+P 
Sbjct: 129 QLTVPKDVLKKHTVTLKAGDEIKLDELAKTLVSAGYTRCDMIEGKGQFSFRGSLADIYPV 188

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
              D   R+ ++G++I+ ++ F   T ++I  V+++ I
Sbjct: 189 S-SDYPVRIELWGDEIDTVASFDIDTQRRIDTVKSVSI 225



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A D+   + E NI +   H  +   E +++ R L  G+ DVLV   L+  G+D+P C  +
Sbjct: 842 AADIHSMVPEANIGI--AHGRMSEEELLDVWRRLIEGEIDVLVCTTLIETGVDVPNCNTL 899

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681
            I +AD  G       L Q  GR  R 
Sbjct: 900 IIENADCMGL----AQLHQLRGRVGRT 922


>gi|168000743|ref|XP_001753075.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695774|gb|EDQ82116.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 793

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 11/130 (8%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I +  + G  I+ T  TKR A+D+   +  R +    +H ++   +R + +   R G 
Sbjct: 378 DLIAVYGKGGKTIVFT-QTKRDADDVATAMA-RTLGCEALHGDISQSQREKTLNAFREGN 435

Query: 633 FDVLVGINLLREGLDIPECGLVAI--LDADKEGFL-RSKTSLIQTIGRAARNVNSKVILY 689
           F VLV  ++   GLDIP   LV    +  D E F+ RS  +     GRA ++  + +++Y
Sbjct: 436 FSVLVATDVAARGLDIPNVDLVIHYEIPNDPETFVHRSGRT-----GRAGKD-GTAILMY 489

Query: 690 ADTITKSIQL 699
           +D  T++++L
Sbjct: 490 SDRQTRTMRL 499


>gi|296171354|ref|ZP_06852710.1| DNA helicase RecG [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894185|gb|EFG73943.1| DNA helicase RecG [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 739

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 11/105 (10%)

Query: 599 TEYLYER-------NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
            E LY R       N+R+  MH  +   ++   +   R G+ DVLV   ++  G+D+P  
Sbjct: 544 AEGLYARLRSGELANLRLGLMHGRLSAEQKDAAMAAFRAGEIDVLVCTTVIEVGVDVPNA 603

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            ++ ++DAD+ G     + L Q  GR  R  +  + L A  ++ +
Sbjct: 604 TVMLVMDADRFGI----SQLHQLRGRIGRGRHPSLCLLASWVSPA 644


>gi|315223854|ref|ZP_07865702.1| transcription-repair coupling factor [Capnocytophaga ochracea
           F0287]
 gi|314946184|gb|EFS98185.1| transcription-repair coupling factor [Capnocytophaga ochracea
           F0287]
          Length = 1109

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 95/234 (40%), Gaps = 25/234 (10%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G+ G+  +  +A V    +RP +V+ P+K  +A L ++ +       + +  SY   YQ 
Sbjct: 31  GLAGASLSLLIANVYTNTKRPLLVLLPDKEESAYLLNDLETLIGEQVLFFPDSYRRPYQ- 89

Query: 235 EAYVPRTDTYIEKESSIN-----EQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVE 288
                     IE   + N     E ++R+ +S           IVVS    ++  + + +
Sbjct: 90  ----------IEDTDNANVLLRAEVLNRLSNSG-------QPLIVVSYPEALFEKVITRK 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
              Q  +++  GD +  + L   L    + R D     G F V G  +++F S   +  +
Sbjct: 133 QLEQSTLKISKGDQLTIELLNEVLFSYNFNRTDFVTEPGEFSVRGGIVDVF-SFSNNEPY 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
           R+  FGN++E I  F   T      +  I I  N           + ++YI E+
Sbjct: 192 RIEFFGNEVESIRTFDVETQLSTTQLSKITIIPNVENKEGNEVRQSFLEYISEQ 245


>gi|292558860|gb|ADE31861.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           suis GZ1]
          Length = 502

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ +IRD +  + DVLV  ++   GLDI  
Sbjct: 236 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAARGLDI-- 293

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R   S + I +           I++ T++R 
Sbjct: 294 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLAIIEDLTKKRM 350

Query: 710 KQLE 713
           K L+
Sbjct: 351 KGLK 354


>gi|282900744|ref|ZP_06308686.1| Type III restriction enzyme, res subunit [Cylindrospermopsis
           raciborskii CS-505]
 gi|281194544|gb|EFA69499.1| Type III restriction enzyme, res subunit [Cylindrospermopsis
           raciborskii CS-505]
          Length = 513

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 10/124 (8%)

Query: 574 EINLAAQQGLRILLTVLTKR--------MAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           EI L     +R+L  +L            A++ T Y   R + +  +  +    ER EI+
Sbjct: 315 EIALGTDGKMRVLADLLADHYPEMVLIFTADNATVYRISRELLIPAITHQTPVKERHEIL 374

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              + G ++ LV  ++L EG+D+P   +  IL     G +R  T  +  I R     N +
Sbjct: 375 TKFKQGIYNTLVASHVLNEGVDVPAAAVAIILSG--TGSIREYTQRLGRILRKGNQENKR 432

Query: 686 VILY 689
            ILY
Sbjct: 433 AILY 436


>gi|124023141|ref|YP_001017448.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9303]
 gi|123963427|gb|ABM78183.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9303]
          Length = 1193

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 125/309 (40%), Gaps = 46/309 (14%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF--FPHNAVEYFVSYY 229
           L+ G    G+    + +     RP +V+ P  +  A  +S       + HN + Y  S  
Sbjct: 30  LMRGAGRVGRALIASAIARHQSRPLVVIVPT-LEEANRWSSLLALMGWSHNHL-YPTSEG 87

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
             Y+P  + P T+    +   ++E +        R+       IV +  +    +  VE+
Sbjct: 88  SPYEP--FDPTTEIVWGQLQVLSELLGESTRRWDRA-------IVATERALQPHLPPVEA 138

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
            +     L  G++++ + L S+L K  Y R        T+   GD ++IFP   E +  R
Sbjct: 139 LASQCEILSRGENIDLESLASTLTKLGYDRVTAVDQEATWSRRGDIVDIFPVSSE-LPVR 197

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP---RPTLNTAMKYIKEELKMR 406
           + +FG++++++ EF P+T + +  V       N   +TP    P +   ++    +   R
Sbjct: 198 LELFGDELDKLREFDPVTQRSLDEV-------NELCLTPSGFSPLIAHQLRQSMPDGLDR 250

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L+  E   +L E                      S  +  R L G    + P +L +YIP
Sbjct: 251 LVSEETLDQLFEG---------------------STPDGIRRLMGIAWNK-PASLLDYIP 288

Query: 467 EDSLLFVDE 475
            +S + +DE
Sbjct: 289 ANSFIAIDE 297


>gi|90076976|dbj|BAE88168.1| unnamed protein product [Macaca fascicularis]
          Length = 488

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+IR  R G  ++LV  ++  EGLDIP+C +V      + G L ++ S++Q  GRA
Sbjct: 331 EVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVV-----RYGLLTNEISMVQARGRA 381


>gi|34496601|ref|NP_900816.1| transcription-repair coupling factor [Chromobacterium violaceum
           ATCC 12472]
 gi|34102455|gb|AAQ58821.1| transcription-repair coupling factor [Chromobacterium violaceum
           ATCC 12472]
          Length = 1130

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 87/199 (43%), Gaps = 25/199 (12%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKE 248
           +RP +++A +   A +L +E   F P  ++  F  +    YD++ P   +          
Sbjct: 35  RRPLLILAADAQAAQRLKAELPFFAPDLSIALFPDWETLPYDHFSPHGDL---------- 84

Query: 249 SSINEQIDRMRHSATRSLLERNDC-IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQK 306
             ++E++      AT   + + +C +V++ VS   G +  V         LK G  ++ +
Sbjct: 85  --VSERL------ATLWQIRQRECQVVIAPVSTALGRLAPVSYLLGRTFFLKTGQQLDVE 136

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +L   +V   Y+     +  G F V G  I+++P     + +R+ +F  +I+ +  F P 
Sbjct: 137 KLRGDMVTAGYQHVTQVMAPGEFSVRGSLIDLYPMG-SPLPYRIDLFDAEIDSLKTFDPD 195

Query: 367 TGQKIRNVETIKIYANSHY 385
           T + +  V  +++     Y
Sbjct: 196 TQRTLYPVPEVRMLPAREY 214



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 15/120 (12%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           M E L E + E  I V   H +++  E  +++RD    +F++L+   ++  G+DIP    
Sbjct: 814 MREKLAELIPEARIGV--AHGQLRERELEQVMRDFLQQRFNLLLCSTIIETGIDIPNANT 871

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           + I  ADK G       L Q  GR  R+ +     YA  +T       D  TR  +K+LE
Sbjct: 872 ILINRADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTP------DGMTRDAQKRLE 918


>gi|229159401|ref|ZP_04287421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
 gi|228624068|gb|EEK80874.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
          Length = 528

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 363

Query: 710 KQLE 713
            ++E
Sbjct: 364 DRME 367


>gi|187251183|ref|YP_001875665.1| superfamily II DNA and RNA helicase [Elusimicrobium minutum Pei191]
 gi|186971343|gb|ACC98328.1| Superfamily II DNA and RNA helicase [Elusimicrobium minutum Pei191]
          Length = 502

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 5/106 (4%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++L   +G   L+   T+   E L ++L + + +   +H   +  +R   I+D R  KFD
Sbjct: 234 VSLLRAKGGSTLIFARTQTSVEWLDKHLTKESFKANSIHGGYRQGKRNLAIKDFREEKFD 293

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +LV  ++   GLDIP   LV   D      LR++   I  IGR AR
Sbjct: 294 ILVATDVAARGLDIPHIQLVINYDLP----LRAE-DYIHRIGRTAR 334


>gi|148980820|ref|ZP_01816230.1| transcription-repair coupling factor [Vibrionales bacterium SWAT-3]
 gi|145961055|gb|EDK26376.1| transcription-repair coupling factor [Vibrionales bacterium SWAT-3]
          Length = 1153

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 23/238 (9%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           LKG   ++ +  L+G   S     +AK+ E      ++  P+  +A +L SE + F    
Sbjct: 12  LKGAGDKKHIGNLVG---SSLALAIAKLAEQHNSHTVLAVPDPQIALKLQSEIEQF---T 65

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
           A E  V+ +  ++   Y    D++   +  I+++I R+      +L    D I +  +S 
Sbjct: 66  ASE--VALFPDWETLPY----DSFSPHQEIISDRIARLY-----ALPTLKDGITIVPIST 114

Query: 281 IYGIGSVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
           +    S   +  Q  + +K GD    ++L   L K  Y+  D     G +   G  +++F
Sbjct: 115 LLQRQSPRDFLLQHTLMVKTGDLYSLEKLRLQLEKSGYRYVDQVFGPGEYASRGSILDLF 174

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           P   +D  +R+  F ++I+ I  F P   + I ++  I++     +    PT  TA++
Sbjct: 175 PMGSKD-PYRIDFFDDEIDTIRTFDPENQRSIEDISEIRLLPAHEF----PTSETAIE 227


>gi|122936787|dbj|BAF45214.1| transcription-repair coupling factor [uncultured bacterium]
          Length = 479

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAE LT  +   N RVR  H ++ T E  +I+ D   G+F +LV   ++  G+DIP    
Sbjct: 160 MAERLTSLI--PNARVRIAHGQMPTRELEQIMSDFYHGRFQILVCTTIIETGIDIPNANT 217

Query: 654 VAILDADKEGF 664
           + I +A   GF
Sbjct: 218 IIINNAQNFGF 228


>gi|109115463|ref|XP_001108799.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like isoform 1
           [Macaca mulatta]
          Length = 678

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+IR  R G  ++LV  ++  EGLDIP+C +V      + G L ++ S++Q  GRA
Sbjct: 422 EVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVV-----RYGLLTNEISMVQARGRA 472


>gi|330997890|ref|ZP_08321724.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329569494|gb|EGG51264.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 483

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 19/150 (12%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   +D+   L     +V  MHS+++  ER E++   +  + DVLV  +++ 
Sbjct: 246 RVIVFASSKLKVKDMAIALGRAGFKVGAMHSDLEQQERDEVMYKFKAQQIDVLVATDIVA 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            G+DI +  LV   D   D E +       +  IGR AR         A+   ++I L +
Sbjct: 306 RGIDIDDIQLVINFDVPHDAEDY-------VHRIGRTAR---------ANNDGEAITL-V 348

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIME 731
            E  ++R   +EH  +  I  +S+ E + E
Sbjct: 349 SEKDQQRFASIEHFLETEIEKRSLPEGLGE 378


>gi|207340598|gb|EDZ68898.1| YPL119Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 303

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 9/112 (8%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L+A+     L+ V TKRMA+ LT++L  +N +   +H +    ER   +   +    D+L
Sbjct: 92  LSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADIL 151

Query: 637 VGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D  +D + +       +  IGR  R  N+ V
Sbjct: 152 VATAVAARGLDIPNVTHVINYDLPSDIDDY-------VHRIGRTGRAGNTGV 196


>gi|91225270|ref|ZP_01260438.1| transcription-repair coupling factor [Vibrio alginolyticus 12G01]
 gi|91189909|gb|EAS76181.1| transcription-repair coupling factor [Vibrio alginolyticus 12G01]
          Length = 1153

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 125/298 (41%), Gaps = 38/298 (12%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L  + G+     +A++ +     ++++ P+  +A +L +E + F      +  VS +  +
Sbjct: 21  LGNLPGAALPLAIAELAKQHSSHSLLVVPDPQIALKLQAEIEQF-----TDQTVSLFPDW 75

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS- 291
           +   Y    D +   +  I+E+I R+       L  + D I +  VS +    S   +  
Sbjct: 76  ETLPY----DNFSPHQEIISERIARLYQ-----LPSQRDGITIVPVSTVLQRQSPRDFLL 126

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q  + +K GD +  ++L   L    Y+  D     G +   G  +++FP    D  +R+ 
Sbjct: 127 QHTLMVKTGDRLSLEKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSND-PYRID 185

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            F ++I+ I  F P   + I +++ I++     +    PT   A++  +   + +     
Sbjct: 186 FFDDEIDTIRTFDPENQRSIDDIQQIQLLPAHEF----PTTKEAIEDFRTRWRTQ----- 236

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                 +A+R  + I     M  T G+  +   Y + L   +      TLFEY PEDS
Sbjct: 237 -----FDARREPESIY----MQVTKGTWPAGIEYWQPLFFDH----TETLFEYFPEDS 281



 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AEDL + + E  I V +     + LERI  + D    +F+VLV   ++  G+D+P  
Sbjct: 826 EKTAEDLQKLIPEARITVAHGQMRERELERI--MNDFYHQRFNVLVCTTIIETGIDVPTA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + +  AD  G       L Q  GR  R+
Sbjct: 884 NTIIMDRADNLGL----AQLHQLRGRVGRS 909


>gi|86148322|ref|ZP_01066616.1| putative ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|85833877|gb|EAQ52041.1| putative ATP-dependent RNA helicase [Vibrio sp. MED222]
          Length = 428

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V  K   E L + LY+R I     H +     R  I+ D + G+ DVL+  ++   G
Sbjct: 259 LIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARG 318

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDI +  +V   D       RS +  +  IGR+ R
Sbjct: 319 LDIEKLPVVINFD-----LPRSPSDYMHRIGRSGR 348


>gi|291165179|gb|ADD81194.1| vasa [Auxis thazard]
          Length = 627

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 448 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 507

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDIP+   V   D        +    +  IGR  R  N+
Sbjct: 508 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNT 543


>gi|146281828|ref|YP_001171981.1| ATP-dependent DNA helicase [Pseudomonas stutzeri A1501]
 gi|145570033|gb|ABP79139.1| probable ATP-dependent DNA helicase [Pseudomonas stutzeri A1501]
          Length = 1437

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDL 628
           VYD +   A +    L+ V T+RMAE  T +L ER     V   H  +   +R+   + L
Sbjct: 261 VYDRLAALAGEHRTTLVFVNTRRMAERTTRHLAERLGGAVVAAHHGSLAREQRLTAEQKL 320

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           + G+  VLV    L  G+DI +  LV  L     G  RS  + +Q +GRA   V
Sbjct: 321 KRGELRVLVATASLELGIDIGDVELVCQL-----GSPRSIAAFLQRVGRAGHQV 369


>gi|50365130|ref|YP_053555.1| DNA repair DNA/RNA helicase [Mesoplasma florum L1]
 gi|50363686|gb|AAT75671.1| DNA repair DNA/RNA helicase [Mesoplasma florum L1]
          Length = 905

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 6/95 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+  +T   A +++ YL  +N++   + S+  T +R  I+ +   G+ + L  +N+  EG
Sbjct: 440 LIFCVTVEHAINISNYLNSKNLKAEVLTSQ-NTKDRKRILHEFSTGRINYLCVVNIFNEG 498

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +DIPE   + +L         SKT  +Q +GR  R
Sbjct: 499 VDIPEINTIILLRPT-----NSKTVYLQQLGRGLR 528


>gi|332849248|ref|XP_511724.3| PREDICTED: eukaryotic initiation factor 4A-III [Pan troglodytes]
          Length = 411

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+P+  L+   D      L      I  IGR+ R
Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELS-----IHRIGRSGR 370


>gi|321469269|gb|EFX80250.1| putative germ-line specific RNA helicase vasa protein [Daphnia
           pulex]
          Length = 761

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I++ V +K+ A+ +  YL   +I+   +H +    +R E +RDL+ GK +VLV  N+  
Sbjct: 580 KIIVFVDSKKTADFVAVYLCNNDIQATSIHGDRLQSQREEALRDLKSGKRNVLVATNVAA 639

Query: 644 EGLDI 648
            GLDI
Sbjct: 640 RGLDI 644


>gi|226246544|ref|NP_001139665.1| vasa protein [Strongylocentrotus purpuratus]
 gi|223056284|gb|ACM80369.1| vasa [Strongylocentrotus purpuratus]
          Length = 766

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TKR A+ L   L +       +H + +  ER E +RD + GK  +LV  ++  
Sbjct: 567 RTLVFVSTKRNADFLASLLSQSEFPTTSIHGDRQQQEREEALRDFKTGKAPILVATSVAA 626

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDIP  G+  +++ D           +  IGR  R  N
Sbjct: 627 RGLDIP--GVKHVVNYD---LPSDIDEYVHRIGRTGRVGN 661


>gi|89632618|gb|ABD77541.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48 [Ictalurus punctatus]
          Length = 153

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 63  DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 117

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  ++   GLD+P+  L+
Sbjct: 118 SGASRVLISTDVWARGLDVPQVSLI 142


>gi|45188175|ref|NP_984398.1| ADR302Wp [Ashbya gossypii ATCC 10895]
 gi|44983019|gb|AAS52222.1| ADR302Wp [Ashbya gossypii ATCC 10895]
          Length = 691

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 6/85 (7%)

Query: 602 LYERN-IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           L++ N I  +Y+ ++ +  ER  I+ D R G  +VL+   +  EG DIP    + +    
Sbjct: 310 LFQANGIEAQYVTAKTRPTERDSIVEDFRRGDIEVLMNCGIFTEGTDIPNIDCLLLCRPT 369

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSK 685
                RS+T L+Q IGR  R  +SK
Sbjct: 370 -----RSRTLLVQMIGRGLRQHHSK 389


>gi|317481857|ref|ZP_07940884.1| transcription-repair coupling factor [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316916648|gb|EFV38043.1| transcription-repair coupling factor [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 1194

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 38/221 (17%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P G +PA  A + +G+  +    ++L V  SG+    A+      R      PN I  AQ
Sbjct: 51  PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SATRSLL 267
           L  E     PH               E   PR DT   + +       R++H S T S+ 
Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDSMF 143

Query: 268 ERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                +V+   S I     G+G VE      +   +G+ +   E    L++  Y R D+ 
Sbjct: 144 GSIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVDLV 198

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + RG F V G  +++FP        R+  FG++I+ I EF+
Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238


>gi|238878821|gb|EEQ42459.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 646

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L ++ +  RY+ S+    ER  I+ D + GKF VL  + +  EG DIP    + +    K
Sbjct: 294 LQKQGVDARYVTSKTSNSERKTIVEDFKQGKFPVLCNVTVFAEGTDIPNIDSIILARPTK 353

Query: 662 EGFLRSKTSLIQTIGRAAR 680
                SK  +IQ IGR  R
Sbjct: 354 -----SKPLMIQMIGRGLR 367


>gi|84392274|ref|ZP_00991701.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01]
 gi|84376394|gb|EAP93274.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01]
          Length = 428

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V  K   E L + LY+R I     H +     R  I+ D + G+ DVL+  ++   G
Sbjct: 259 LIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARG 318

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDI +  +V   D       RS +  +  IGR+ R
Sbjct: 319 LDIEKLPVVINFD-----LPRSPSDYMHRIGRSGR 348


>gi|71023479|ref|XP_761969.1| hypothetical protein UM05822.1 [Ustilago maydis 521]
 gi|46101534|gb|EAK86767.1| hypothetical protein UM05822.1 [Ustilago maydis 521]
          Length = 775

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGL 653
           ++LT       I  RY+H      ER +++ D R G + VLV   +L EG D+P  +C L
Sbjct: 363 QELTNTFRSAGIDARYLHGGTPMPERRQLLEDFRNGVYPVLVNCAILTEGADVPAIDCVL 422

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR 680
           +A          RS+    Q IGR  R
Sbjct: 423 LARP-------TRSRNLFSQMIGRGLR 442


>gi|242005744|ref|XP_002423722.1| predicted protein [Pediculus humanus corporis]
 gi|212506907|gb|EEB10984.1| predicted protein [Pediculus humanus corporis]
          Length = 1130

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 585  ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            +L+ V +K  A++L   L    I V  +HS+    +R  +IR  R GK  VL+   L+  
Sbjct: 1001 VLVFVQSKERAQELFNELVYDGINVDVIHSDRTQKQRDNVIRSFREGKIWVLICTELMGR 1060

Query: 645  GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D     LV   D     F  S  S I  IGR  R
Sbjct: 1061 GIDFKGVNLVVNYD-----FPPSSVSYIHRIGRTGR 1091


>gi|169335734|ref|ZP_02862927.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258472|gb|EDS72438.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM
           17244]
          Length = 510

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 27/205 (13%)

Query: 587 LTVL---TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           LT++   TKRM +DLT++L +       +H +++  ER  ++ + +  K  +LV  ++  
Sbjct: 246 LTIIFCNTKRMVDDLTKFLRKNGFSAECLHGDIRQNERSRVMSNFKNAKTPILVATDVAA 305

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID- 702
            G+D+ +   V   D       ++    I  IGR AR   +   +   T+T + +   D 
Sbjct: 306 RGIDVKDVEYVINYD-----IPQNSEYYIHRIGRTARGGKTGTSI---TMTNNRKQVTDL 357

Query: 703 ----ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
               + T  + K+L+   K++IN ++ K+ +  +I  +  E+ +   +  D + L  S+ 
Sbjct: 358 KMILKETNSKIKKLDIPTKNDINSKNSKDNMSVIISALKRENNSHDEMISDLKDLGYSE- 416

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEA 783
                      Q+  AA NL F E 
Sbjct: 417 ----------NQIAKAALNLYFGET 431


>gi|145476289|ref|XP_001424167.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391230|emb|CAK56769.1| unnamed protein product [Paramecium tetraurelia]
          Length = 475

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 586 LLTVLTKRMAEDLTEY-LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L    K++     EY L +  +  RY+H ++K  +R  I++D R GK + L+  NL   
Sbjct: 340 VLVFCQKKIDTQKLEYRLSQHGVNARYLHGDLKQNQRDYIMQDFRNGKVNCLITTNLASR 399

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           GLD+ +  +V   D     F  +    I  IGR  R
Sbjct: 400 GLDVSDVDVVINYD-----FPENIEDYIHRIGRTGR 430


>gi|22651415|gb|AAL05260.1| QDE3-like protein [Blumeria graminis]
          Length = 1632

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 10/104 (9%)

Query: 581  QGLRILLTVLTKRMAEDLTEYLY-ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +G   ++  L+++  ED+ + L  E NI V Y H+ +K+ E+ ++ RD + GK  V+V  
Sbjct: 1028 RGQTGIIYTLSRKGCEDMAKKLSKEFNISVHYYHAGMKSEEKTKVTRDWQSGKLQVVVAT 1087

Query: 640  NLLREGLDIPECGLVAILDADK--EGFLRSKTSLIQTIGRAARN 681
                 G+D P+   V      K  EG+        Q  GRA R+
Sbjct: 1088 IAFGMGIDKPDVRFVIHYTIPKSLEGYY-------QETGRAGRD 1124


>gi|291406113|ref|XP_002719437.1| PREDICTED: DEXH (Asp-Glu-X-His) box polypeptide 58-like
           [Oryctolagus cuniculus]
          Length = 678

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+IR  R G  ++LV  +++ EG+DIP C +V      + G L ++ S++Q  GRA
Sbjct: 422 EVIRRFRAGMLNLLVATSVVEEGMDIPHCNVVV-----RYGLLTNEISMVQARGRA 472


>gi|282850862|ref|ZP_06260236.1| putative ATP-dependent DNA helicase RecG [Lactobacillus gasseri
           224-1]
 gi|282557814|gb|EFB63402.1| putative ATP-dependent DNA helicase RecG [Lactobacillus gasseri
           224-1]
          Length = 401

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 6/89 (6%)

Query: 595 AEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           AEDL   L  Y ++  V  +H ++K  ++ EI+     GK D+LV  +++  G+D+P   
Sbjct: 210 AEDLQARLAHYFKDENVVLLHGQMKGDQKNEIMDSFAAGKIDILVTTSVIEVGVDVPNAN 269

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
           ++ I +AD+ G     + L Q  GR  R 
Sbjct: 270 MMVIFNADRFGL----SQLHQLRGRIGRG 294


>gi|11344594|gb|AAG34368.1|AF095844_1 melanoma differentiation associated protein-5 [Homo sapiens]
          Length = 1025

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 12/116 (10%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ E+I   R GK ++L+   +  EGLDI EC +V      + G + ++ +++Q  GR A
Sbjct: 770 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 823

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEV 732
           R   S  +L A + +  I+    ET     +++ +   H   N+ P+    KI+E+
Sbjct: 824 RADESTYVLVAHSGSGVIE---HETVNDFREKMMYKAIHCVQNMKPEEYAHKILEL 876


>gi|126174619|ref|YP_001050768.1| transcription-repair coupling factor [Shewanella baltica OS155]
 gi|125997824|gb|ABN61899.1| transcription-repair coupling factor [Shewanella baltica OS155]
          Length = 1162

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 101/216 (46%), Gaps = 25/216 (11%)

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQ 315
           R+   +  S +E+N  IV+  V+ +      ++Y S  +  LK GDS +  ++   L   
Sbjct: 96  RLETLSQLSQIEQN--IVIVPVTTLMMRLPPKAYLSANVFMLKKGDSYKLHDVRQHLTDT 153

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y   +     G F + G  ++IFP+ + ++  R+ +F  ++E I  F P T + ++ V+
Sbjct: 154 GYHSVEQVYEHGEFAIRGSILDIFPTGM-NMPLRIELFDEEVETIRHFDPETQRSLQPVD 212

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
           +I++     +    PT ++A++  ++  + R   + K     E + + Q ++ +L     
Sbjct: 213 SIRLLPAKEF----PTDSSAIEGFRQRYRRRFEVIVK-----EPESVYQLVSRNL----- 258

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                 IENY          +   TLF+Y+P+D+ L
Sbjct: 259 --MPAGIENYLPLFF-----DDTATLFDYLPKDTQL 287


>gi|330812027|ref|YP_004356489.1| ATP-dependent DNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380135|gb|AEA71485.1| Putative ATP-dependent DNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1437

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYM 612
           PPV + +  A    E VY+ +   A +    L+ V T+R+AE L+ +L ER  +  V   
Sbjct: 249 PPVPLSAVMANDVWELVYNRLAELAGEHRTTLVFVNTRRLAERLSRHLSERLGKDAVAAH 308

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R++  + L+ G+  VL+    L  G+DI +  LV  + +      RS ++ +
Sbjct: 309 HGSLAKEFRLDAEQRLKRGELKVLIATASLELGIDIGDVDLVCQIASP-----RSISAFL 363

Query: 673 QTIGRAARNVNS--KVILYADTITKSIQL-AIDETTRRREKQLEHNKKHNIN 721
           Q +GR+   V    K  L+A T    I+  A+ +  RR E  + H  K  ++
Sbjct: 364 QRVGRSGHQVGGTPKGRLFATTRDDLIECAALLDCVRRGELDILHIPKAPLD 415


>gi|291544767|emb|CBL17876.1| Superfamily II DNA and RNA helicases [Ruminococcus sp. 18P13]
          Length = 555

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 9/100 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LTE L ++ I+   +H ++K ++R +++   + G+  VLV  ++   G+D+  
Sbjct: 232 TKRTVDELTEALCDKGIQAAGLHGDMKQMQRTQVMNAFKSGRIGVLVATDVAARGIDVNG 291

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             LV   D   D E +       I  IGR  R   S   L
Sbjct: 292 IDLVFNYDLPQDNEYY-------IHRIGRTGRAGKSGTAL 324


>gi|218676540|ref|YP_002395359.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218324808|emb|CAV26511.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 468

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V  K   E L + LY+R I     H +     R  I+ D + G+ DVL+  ++   G
Sbjct: 299 LIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARG 358

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           LDI +  +V   D       RS +  +  IGR+ R+
Sbjct: 359 LDIEKLPVVINFD-----LPRSPSDYMHRIGRSGRS 389


>gi|148978426|ref|ZP_01814920.1| putative ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145962452|gb|EDK27731.1| putative ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 428

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V  K   E L + LY+R I     H +     R  I+ D + G+ DVL+  ++   G
Sbjct: 259 LIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARG 318

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDI +  +V   D       RS +  +  IGR+ R
Sbjct: 319 LDIEKLPVVINFD-----LPRSPSDYMHRIGRSGR 348


>gi|56750236|ref|YP_170937.1| transcription-repair coupling factor [Synechococcus elongatus PCC
           6301]
 gi|56685195|dbj|BAD78417.1| transcription-repair coupling factor [Synechococcus elongatus PCC
           6301]
          Length = 1153

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 266 LLERND--CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
           LLE++    IV +  S    +  VE+       L+ G  V   EL     +  Y+R D  
Sbjct: 110 LLEQSQPVAIVATERSLQPHLPPVEALRPFCQTLQRGQEVNLGELADRFAQFGYERVDTV 169

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G +   GD I++FP   E +  R+ +FG+++E + EF P T + +  +E +++   S
Sbjct: 170 ETEGQWSRRGDIIDLFPVSAE-LPVRLELFGDELERLREFDPATQRSLDEIEVLRLTPTS 228

Query: 384 H 384
           +
Sbjct: 229 Y 229


>gi|323463426|gb|ADX75579.1| putative helicase [Staphylococcus pseudintermedius ED99]
          Length = 954

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E+I  LRLG+ + ++ ++L  EG+DIPE   V +L A       S    +Q +GR  R
Sbjct: 490 RAEVIAQLRLGELNYIITVDLFNEGIDIPEVNQVVMLRATT-----SSIIFVQQLGRGLR 544

Query: 681 NVNSK 685
             ++K
Sbjct: 545 KSSNK 549


>gi|320547868|ref|ZP_08042151.1| competence protein FA [Streptococcus equinus ATCC 9812]
 gi|320447408|gb|EFW88168.1| competence protein FA [Streptococcus equinus ATCC 9812]
          Length = 432

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 6/97 (6%)

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT-- 674
           KT +R+E++   R  +  +LV   +L  G+  P   +  +L   K   L +K++L+Q   
Sbjct: 336 KTEDRLELVEKFRKNEITILVSTTILERGVTFPCVDVFVVLANHK---LYTKSALVQISG 392

Query: 675 -IGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
            +GRAA+    +++   D  TKS+Q AI E     +K
Sbjct: 393 RVGRAAKRPTGELLFLHDGATKSMQQAIKEIKEMNKK 429


>gi|317480121|ref|ZP_07939231.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
 gi|316903668|gb|EFV25512.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
          Length = 405

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 9/107 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   +++T+ L +  + V  MHS+++  +R E++ + + G+ ++LV  +++ 
Sbjct: 223 RVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVA 282

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+DI +  LV   D   D E +       +  IGR AR  N  V +
Sbjct: 283 RGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAI 322


>gi|300521552|gb|ADK25987.1| ERRC4-type helicase [Candidatus Nitrososphaera gargensis]
          Length = 740

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+  +++  R G+FDVLV  ++  EGLDIPE  LV   +      + S+   IQ  GR  
Sbjct: 426 EQAAVLQSFREGEFDVLVATSIAEEGLDIPEVDLVVFYEP-----VPSEIRYIQRRGRTG 480

Query: 680 RNVNSKVILYA--DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           R     V++ A  DTI      A   + RR E+  E     N     VK   +E  +P+ 
Sbjct: 481 RKAAGSVVILAANDTIDTRHLYA---SKRRVERMKESLSSINAVLAPVKRAFLEP-NPVT 536

Query: 738 LEDAAT 743
            E+ A 
Sbjct: 537 AEELAA 542


>gi|332026541|gb|EGI66659.1| Eukaryotic initiation factor 4A-II [Acromyrmex echinatior]
          Length = 423

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++      + ++   T+R  + LTE +++R+  V  MH +++  ER  I+R  R
Sbjct: 282 DLYDTLSIT-----QAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFR 336

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 337 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 374


>gi|310791197|gb|EFQ26726.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 608

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V +KR A+DL ++LY        MHS+   LER   +R  R GK  +L+   +  
Sbjct: 384 RTIIFVNSKRTADDLDDFLYNIGFPCTSMHSDRTQLEREASMRAFRAGKSPILIATGISA 443

Query: 644 EGLDI 648
            G+D+
Sbjct: 444 RGIDV 448


>gi|256860908|gb|ACV32356.1| vasa [Scomber japonicus]
          Length = 643

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R GK  V+V  ++  
Sbjct: 462 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVMVATSVAA 521

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDIP+   V   D        +    +  IGR  R  N+
Sbjct: 522 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNT 557


>gi|332523021|ref|ZP_08399273.1| putative ComF operon protein 1 [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314285|gb|EGJ27270.1| putative ComF operon protein 1 [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 433

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 8/99 (8%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           ++ Y+ S+  T++R E+I + R G+  +LV   +L  G+ IP   +  IL       L +
Sbjct: 329 KIGYVSSQ--TIKRKELIENFRRGELSILVTTTILERGVTIPSVDVFVILAHHH---LFT 383

Query: 668 KTSLIQTIGRAARNVN---SKVILYADTITKSIQLAIDE 703
            +SLIQ  GR  R+V+    KVI + + ++ ++  A  E
Sbjct: 384 SSSLIQIAGRVGRSVDRPTGKVIFFHEGVSSAMYRARKE 422


>gi|291165171|gb|ADD81190.1| vasa [Scomber australasicus]
          Length = 645

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R GK  V+V  ++  
Sbjct: 462 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVMVATSVAA 521

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDIP+   V   D        +    +  IGR  R  N+
Sbjct: 522 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNT 557


>gi|229552461|ref|ZP_04441186.1| DNA helicase RecG [Lactobacillus rhamnosus LMS2-1]
 gi|258539832|ref|YP_003174331.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus Lc 705]
 gi|229314198|gb|EEN80171.1| DNA helicase RecG [Lactobacillus rhamnosus LMS2-1]
 gi|257151508|emb|CAR90480.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus Lc 705]
          Length = 679

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H ++K  E+ +I+R    G   VLV   ++  G+D+P   ++AI DAD+ G    
Sbjct: 501 QVALLHGKMKPDEKDQIMRAFSHGDIAVLVSTTVVEVGVDVPNATVMAIFDADRFGL--- 557

Query: 668 KTSLIQTIGRAAR-NVNSKVILYAD 691
            + L Q  GR  R N  ++ +L AD
Sbjct: 558 -SQLHQLRGRVGRGNKAAQCLLIAD 581


>gi|299758408|ref|NP_001177648.1| eukaryotic initiation factor 4a [Tribolium castaneum]
          Length = 419

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++      + ++   T+R  + LTE +++R+  V  MH +++  ER  I+R  R
Sbjct: 278 DLYDTLSIT-----QAVIFCNTRRKVDWLTENMHKRDFTVSAMHGDMEQRERDVIMRQFR 332

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 333 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 370


>gi|27886568|ref|NP_071451.2| interferon-induced helicase C domain-containing protein 1 [Homo
           sapiens]
 gi|134047802|sp|Q9BYX4|IFIH1_HUMAN RecName: Full=Interferon-induced helicase C domain-containing
           protein 1; AltName: Full=Clinically amyopathic
           dermatomyositis autoantigen 140 kDa; Short=CADM-140
           autoantigen; AltName: Full=Helicase with 2 CARD domains;
           Short=Helicard; AltName: Full=Interferon-induced with
           helicase C domain protein 1; AltName: Full=Melanoma
           differentiation-associated protein 5; Short=MDA-5;
           AltName: Full=Murabutide down-regulated protein;
           AltName: Full=RNA helicase-DEAD box protein 116
          Length = 1025

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 12/116 (10%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ E+I   R GK ++L+   +  EGLDI EC +V      + G + ++ +++Q  GR A
Sbjct: 770 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 823

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEV 732
           R   S  +L A + +  I+    ET     +++ +   H   N+ P+    KI+E+
Sbjct: 824 RADESTYVLVAHSGSGVIE---HETVNDFREKMMYKAIHCVQNMKPEEYAHKILEL 876


>gi|126463950|ref|YP_001045063.1| type III restriction enzyme, res subunit [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126105761|gb|ABN78291.1| type III restriction enzyme, res subunit [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 928

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R AE +  +   + +R   +HS   +  R   +  L  G+ D+L  +++  EG+D+P  G
Sbjct: 466 RHAEFMATFFQAQGLRAVAVHSGPGSAPRATSLDRLGHGEIDILFAVDMFNEGVDVPNIG 525

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            V +L   +   L      +Q +GR  R V  K++   D I
Sbjct: 526 TVMMLRPTESVIL-----WLQQLGRGLRRVEGKLLRVIDYI 561


>gi|307194191|gb|EFN76608.1| Eukaryotic initiation factor 4A-II [Harpegnathos saltator]
          Length = 423

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++      + ++   T+R  + LTE +++R+  V  MH +++  ER  I+R  R
Sbjct: 282 DLYDTLSIT-----QAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFR 336

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 337 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 374


>gi|293380322|ref|ZP_06626396.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus 214-1]
 gi|290923137|gb|EFE00066.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus 214-1]
          Length = 678

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 17/188 (9%)

Query: 522 RPTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           +P  + ++ATP   +  L     + V +I        P +      +Q+++VY ++    
Sbjct: 403 QPDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISTWKTSSQMKEVYRQMQEQL 462

Query: 580 QQGLRI-----LLT---VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLR 629
            QG +I     L+T    L  + AE+L E L     N +V  +H ++   ++ EI+    
Sbjct: 463 NQGFQIYAVTPLITESETLDLKNAEELHEKLSHDFPNHKVVLLHGQMPGAQKDEIMTAFA 522

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVIL 688
            G+ D+LV  +++  G+D+    ++ I +AD+ G     + L Q  GR  R    S  + 
Sbjct: 523 AGEIDILVTTSVIEVGVDVANANMMVIYNADRFGL----SQLHQLRGRIGRGQTQSYCVF 578

Query: 689 YADTITKS 696
            AD  T S
Sbjct: 579 LADPKTDS 586



 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 560 EIRSART--QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T   V  ++  I    Q  L +   +L  +  + + E L    +RV  +    K
Sbjct: 284 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 343

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           TLER EI R+L  G  +V++G + L+++ +   + GLV I
Sbjct: 344 TLERREIYRELTDGTINVVIGTHALIQDSVIFKKLGLVII 383


>gi|260880987|ref|ZP_05403342.2| primosomal protein [Mitsuokella multacida DSM 20544]
 gi|260850126|gb|EEX70133.1| primosomal protein [Mitsuokella multacida DSM 20544]
          Length = 828

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 4/75 (5%)

Query: 152 DQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT---FTMAKVIEAMQRPAIVMAPNKILAA 207
           DQ   +AQ+   I + R +  LL GVTGSGKT     +A+ + A  R  IV+ P   L  
Sbjct: 300 DQQQVVAQVYPAIDAARYQGFLLKGVTGSGKTQVYIELAERVRAAGRRVIVLVPEIALTG 359

Query: 208 QLYSEFKNFFPHNAV 222
           Q+   FK++FP + V
Sbjct: 360 QVVMAFKSYFPDDLV 374



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           EI+   R G++D+L+G  ++ +G DIP    V I+ AD    +       R    + QT 
Sbjct: 625 EILESFRRGEYDILLGTQMVAKGHDIPNVTAVGIISADSSLNMPDFRAAERCFMLITQTA 684

Query: 676 GRAARN 681
           GRA R+
Sbjct: 685 GRAGRH 690


>gi|281357501|ref|ZP_06243989.1| transcription-repair coupling factor [Victivallis vadensis ATCC
           BAA-548]
 gi|281316104|gb|EFB00130.1| transcription-repair coupling factor [Victivallis vadensis ATCC
           BAA-548]
          Length = 1098

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 5/140 (3%)

Query: 273 IVVSSVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           +VV SV  +       E+  +  + LK G  +   ELL  LV+  Y  +    + G F  
Sbjct: 117 LVVGSVHALLAPAPAPETTVEAQLTLKAGMELPMAELLEKLVRLDYDDEYEATVSGEFAR 176

Query: 332 CGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
            G  I+IF P+H  D   RV  FG+ I+ +  F P T +    VE  ++   +  +T   
Sbjct: 177 RGGIIDIFSPAH--DFPCRVEFFGDTIDSLRSFAPETQRSTGAVEEYRVIGRAG-ITAGG 233

Query: 391 TLNTAMKYIKEELKMRLIEL 410
             ++ +    EE   RL+ L
Sbjct: 234 AADSDLFAYFEERDYRLLTL 253


>gi|108762520|ref|YP_629274.1| transcription-repair coupling factor [Myxococcus xanthus DK 1622]
 gi|108466400|gb|ABF91585.1| transcription-repair coupling factor [Myxococcus xanthus DK 1622]
          Length = 1188

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 125/283 (44%), Gaps = 20/283 (7%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D  F Q Q D   +GD     AQ++  + + ++V+   G+ G+ +   +A++  A++ P 
Sbjct: 2   DTPFIQTQ-DGGAAGD---PFAQVVDELRAGQRVRTQ-GLKGAARGHVLARLHGALRAPL 56

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           + +A ++  A  L ++  +FF                 +  +P  D      +++ E++ 
Sbjct: 57  VCVAVDEEAADALAAD-LSFFLGGQGSLLAPRVLRLPADEVLP-YDEVSPDAAAVTERLG 114

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            + H    +   R   +V+S  +    +  +     +  ++ +G   ++  L   LV+  
Sbjct: 115 ALFHLGQGT---RFPALVLSVRALHRKVLPLAVMRALAARVAVGQDFDRDSLARRLVRMG 171

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+   +    GTF V GD +++F S L D   R+  FG+ IE I  F P   Q  R V+ 
Sbjct: 172 YQNSPLVEDVGTFSVRGDLLDVF-SPLYDKPVRLEFFGDTIESIRAFDP---QSQRTVDA 227

Query: 377 IK----IYANSHYVT--PRPTLNTAMKYIKEELKMRLIELEKE 413
           +K    + A    +T   RP   +A + + + + +  I+L ++
Sbjct: 228 LKEVDLVPAREVLLTDETRPRAESAARAVADRINLPTIKLREQ 270


>gi|72548684|ref|XP_843415.1| ATP-dependent RNA helicase [Leishmania major strain Friedlin]
 gi|323363932|emb|CBZ12938.1| putative ATP-dependent RNA helicase [Leishmania major strain
           Friedlin]
          Length = 923

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK+MAED+   L+   I    +H + +  +R   + D +     +LV  ++   
Sbjct: 722 VLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPILVATDVASR 781

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           GLDIP+   V   D  +E  +   T  I   GRA 
Sbjct: 782 GLDIPDVAHVVQFDLPQE--MDDYTHRIGRTGRAG 814


>gi|330834740|ref|YP_004409468.1| type III restriction enzyme, res subunit [Metallosphaera cuprina
           Ar-4]
 gi|329566879|gb|AEB94984.1| type III restriction enzyme, res subunit [Metallosphaera cuprina
           Ar-4]
          Length = 654

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV+ +  E+K  ER++I+ + + G  DV++  ++  EG+DIPE  L+ + D  K     S
Sbjct: 321 RVKTLTGELKKEERLKIVDEAKRGLVDVIISTHVGEEGIDIPEAKLLIMTDVPK-----S 375

Query: 668 KTSLIQTIGRAARNVNSKVILYADTIT 694
                Q +GR  R  N  V     T+T
Sbjct: 376 PLRFYQRLGRLIRKTNETVKYLVVTLT 402


>gi|326517806|dbj|BAK03821.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 601

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           +D+   L  R ++   +H ++  L R  +++  + G+F VLV   L   GLDIPEC LV 
Sbjct: 473 KDVVFKLEARGMKAIELHGDLGKLARSTVLKKFKAGEFRVLVTNELSARGLDIPECDLVI 532

Query: 656 ILD 658
            LD
Sbjct: 533 NLD 535


>gi|313898319|ref|ZP_07831856.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2]
 gi|312956701|gb|EFR38332.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2]
          Length = 585

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 24/142 (16%)

Query: 556 DPP-VEIRSARTQVEDV----YDEINLAAQQGLRILLT----------VLTKRMAEDLTE 600
           DP  VEI+SA+  ++ V    YD         LR+LL+            TK+M ++L +
Sbjct: 202 DPVRVEIKSAQRTIDTVEQIYYDAPRGKKANALRVLLSHYDPDLCMIFCNTKKMVDELCD 261

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD-- 658
            L + NI+   +H ++K   R  ++   R G + +L+  ++   G+D+ +  LV   D  
Sbjct: 262 ELNKHNIKAISLHGDMKQEFRSRVMEQFRSGNYPILIATDVAARGIDVDDIDLVVNFDIP 321

Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680
            D E +       I  +GR  R
Sbjct: 322 QDNEYY-------IHRVGRTGR 336


>gi|94267559|ref|ZP_01290925.1| Helicase-like [delta proteobacterium MLMS-1]
 gi|93451953|gb|EAT02669.1| Helicase-like [delta proteobacterium MLMS-1]
          Length = 522

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 8/115 (6%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E NL A +G+   +++   + A+ + E   +R I      S V + E   ++ DLR G+ 
Sbjct: 29  ESNLEAIKGVGFCVSI---KHAQYMAEMFNQRGIAAAAFVSGVDSAECSAMLADLRNGRL 85

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             L  ++ L EG+D+P+  +V  L   +     S T  +Q +GR  R+   K  L
Sbjct: 86  SFLFTVDKLSEGVDVPDMNVVLFLRPTE-----SLTVFLQQLGRGLRHAPGKDCL 135


>gi|327480065|gb|AEA83375.1| ATP-dependent DNA helicase [Pseudomonas stutzeri DSM 4166]
          Length = 1450

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 9/130 (6%)

Query: 557 PPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612
           PPV + +  +      VYD +   A +    L+ V T+RMAE  T +L ER     V   
Sbjct: 259 PPVPLEAVMSNDAWALVYDRLAALAGEHRTTLVFVNTRRMAERTTRHLAERLGGAVVAAH 318

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +   +R+   + L+ G+  VLV    L  G+DI +  LV  L     G  RS  + +
Sbjct: 319 HGSLAREQRLTAEQKLKRGELRVLVATASLELGIDIGDVELVCQL-----GSPRSIAAFL 373

Query: 673 QTIGRAARNV 682
           Q +GRA   V
Sbjct: 374 QRVGRAGHQV 383


>gi|322799953|gb|EFZ21079.1| hypothetical protein SINV_07394 [Solenopsis invicta]
          Length = 423

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++      + ++   T+R  + LTE +++R+  V  MH +++  ER  I+R  R
Sbjct: 282 DLYDTLSIT-----QAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFR 336

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 337 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 374


>gi|315637410|ref|ZP_07892623.1| primosome assembly protein PriA [Arcobacter butzleri JV22]
 gi|315478302|gb|EFU69022.1| primosome assembly protein PriA [Arcobacter butzleri JV22]
          Length = 388

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 9/119 (7%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE-IIRDLRLGKFDVL 636
           + + G+   L V T ++ E+L     ++NI+ R+   E+KT  +++ I+ D   GK D+L
Sbjct: 152 SCKTGIIHNLRVGTAQIEEELKAIFPQKNIK-RFDRDEIKTENQLKTILNDFNSGKIDIL 210

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTS-------LIQTIGRAARNVNSKVIL 688
           VG  +L +G D     L  +L  D    + S  +       LIQ  GR+ R+   +VI+
Sbjct: 211 VGTQMLSKGHDYHNVKLAVVLGIDSVLNMNSYKAREKALSLLIQISGRSGRSGFGEVII 269


>gi|134057099|emb|CAK44387.1| unnamed protein product [Aspergillus niger]
          Length = 491

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R
Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPT-----NRENYIHRIGRSGR 357


>gi|110004999|emb|CAK99330.1| hypothetical atp-dependent helicase protein [Spiroplasma citri]
          Length = 911

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 6/95 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+  +T   A+ +  +L  +++R  Y+ SE +   R  I+ + + G+ + L  +N+  EG
Sbjct: 442 LIFCVTTEHAKLVATFLRTKHLRADYLTSENRD-HRTRILHEFKTGRINYLCIVNMFNEG 500

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +D+PE   + +L         SKT  +Q +GR  R
Sbjct: 501 IDVPEINTIILLRPTN-----SKTVYLQQLGRGLR 530


>gi|62988819|gb|AAY24206.1| unknown [Homo sapiens]
          Length = 589

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 12/132 (9%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ E+I   R GK ++L+   +  EGLDI EC +V      + G + ++ +++Q  GR A
Sbjct: 334 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 387

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEVIDPI 736
           R   S  +L A + +  I+    ET     +++ +   H   N+ P+    KI+E+    
Sbjct: 388 RADESTYVLVAHSGSGVIE---HETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQS 444

Query: 737 LLEDAATTNISI 748
           ++E    T  +I
Sbjct: 445 IMEKKMKTKRNI 456


>gi|332971576|gb|EGK10526.1| transcription-repair coupling factor [Kingella kingae ATCC 23330]
          Length = 1126

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 90/211 (42%), Gaps = 21/211 (9%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI----N 252
           IV+  +   A +L+  ++ F PH+    F+  ++    E + P  D   E+ S +    N
Sbjct: 37  IVLTKDSESAQRLHEAWQFFRPHDNGS-FLPDWETLPYEHFSPHQDLVSERLSVLWQLKN 95

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +QI+ +      ++ +      V+  S I G             LK+G +V    L  +L
Sbjct: 96  KQINALFLPVATAMQK------VAPTSFILG---------RTFWLKVGQNVNIDTLRENL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E   +R+ +F  +I+ I  F P T + I+
Sbjct: 141 VDAGYSAVSNVVAAGEFAVRGGIVDLFPMGSE-FPYRIDLFDKEIDTIKTFDPETQRTIQ 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           +++ I++     + T   T        +EE+
Sbjct: 200 SIDEIRLLPAHEFPTDSDTQKIFRSRFREEI 230



 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+   H +++  E  +++RD    KF+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 822 RIGVAHGQLRERELEQVMRDFLNQKFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 878

Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
              L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 879 -AQLHQLRGRVGRSHHQAYAYLLTPEFITKDAEKRLD 914


>gi|307189936|gb|EFN74172.1| Eukaryotic initiation factor 4A-II [Camponotus floridanus]
          Length = 423

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++      + ++   T+R  + LTE +++R+  V  MH +++  ER  I+R  R
Sbjct: 282 DLYDTLSIT-----QAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFR 336

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 337 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 374


>gi|237649235|ref|ZP_04523487.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CCRI
           1974]
 gi|237821995|ref|ZP_04597840.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 671

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTAH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|285018817|ref|YP_003376528.1| ATP-dependent RNA helicase (cold-shock dead box protein)
           [Xanthomonas albilineans GPE PC73]
 gi|283474035|emb|CBA16536.1| probable atp-dependent rna helicase (cold-shock dead box protein)
           [Xanthomonas albilineans]
          Length = 657

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 11/154 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   ++L + L  R +    ++ +++  +R  +I+ L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  + + IL+     + +  AI+
Sbjct: 311 GLDVERISHVLNYDIPYDTESYVHR----IGRTGRAGR--SGEAILFVSPRERGMLRAIE 364

Query: 703 ETTRRREKQLEHNKKHNINPQSVK---EKIMEVI 733
             TR+  ++++      +N Q V    E+I E I
Sbjct: 365 RATRQPIEEMQLPSVDAVNDQRVSRFMERISETI 398


>gi|168491421|ref|ZP_02715564.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           CDC0288-04]
 gi|183574121|gb|EDT94649.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           CDC0288-04]
          Length = 671

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|313213311|emb|CBY37141.1| unnamed protein product [Oikopleura dioica]
          Length = 499

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 5/98 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TKR  ++L   +    +R   +H +    ER  +++D R G+  VLV  ++  
Sbjct: 301 KILVFTDTKRDCDNLAYTMSNGRVRCAAIHGDKDQRERERVLKDFRNGQISVLVATDVAA 360

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            GLDI + G V   D     F       +  IGR AR 
Sbjct: 361 RGLDIDDIGTVINYD-----FPSQLEDYVHRIGRTARG 393


>gi|270296763|ref|ZP_06202962.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272750|gb|EFA18613.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 429

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 9/107 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   +++T+ L +  + V  MHS+++  +R E++ + + G+ ++LV  +++ 
Sbjct: 246 RVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVA 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+DI +  LV   D   D E +       +  IGR AR  N  V +
Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAI 345


>gi|294932985|ref|XP_002780540.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239890474|gb|EER12335.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 525

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RI++   TK+ A+ LT  +   N     +H + +  ER  I+ D + G+ +VLV  ++ +
Sbjct: 390 RIIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILNDFKTGRCNVLVATDVAQ 449

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS-IQLAID 702
            GLDI     V   D  K   +      I   GRA    NS   +  DT T   +++A D
Sbjct: 450 RGLDIKNVEWVVNYDMPKT--IEDYVHRIGRTGRAGAVGNSLTFITNDTHTPDRVRMAKD 507


>gi|229496199|ref|ZP_04389919.1| transcription-repair coupling factor [Porphyromonas endodontalis
           ATCC 35406]
 gi|229316777|gb|EEN82690.1| transcription-repair coupling factor [Porphyromonas endodontalis
           ATCC 35406]
          Length = 1123

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 22/219 (10%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV-IEAMQRPAIVMAPNKILA 206
           HPS     ++AQ L  I + E ++   GVTGS     +A + I+  ++P +++A ++  A
Sbjct: 22  HPS---IGSLAQTLSSIQTGEAIRYK-GVTGSALAVIVAGLHIQETKQPLLIVANDEESA 77

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266
             LYS+        +V +F S Y       ++    T    E   +E I R         
Sbjct: 78  GYLYSDLIQILGRESVLFFPSSY-----RRHIRYGHTDAGSEVLRSELIAR--------- 123

Query: 267 LERNDCIVVSS--VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           L   DC ++ S   +   GI +       +  L++G  V++++L +  V + +   D   
Sbjct: 124 LSLGDCPIIVSHPFALAEGIPNANEVETHVRSLRVGQEVDRQQLRTWFVDEGFTITDYVY 183

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
             G     G  ++IF  + E    R+  F  +IE I  F
Sbjct: 184 QPGEVAFRGSIVDIFAYNAER-PIRLDFFDTEIESIRSF 221


>gi|81300135|ref|YP_400343.1| transcription-repair coupling factor [Synechococcus elongatus PCC
           7942]
 gi|81169016|gb|ABB57356.1| transcription-repair coupling factor [Synechococcus elongatus PCC
           7942]
          Length = 1153

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 266 LLERND--CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
           LLE++    IV +  S    +  VE+       L+ G  V   EL     +  Y+R D  
Sbjct: 110 LLEQSQPVAIVATERSLQPHLPPVEALRPFCQTLQRGQEVNLGELADRFAQFGYERVDTV 169

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G +   GD I++FP   E +  R+ +FG+++E + EF P T + +  +E +++   S
Sbjct: 170 ETEGQWSRRGDIIDLFPVSAE-LPVRLELFGDELERLREFDPATQRSLDEIEVLRLTPTS 228

Query: 384 H 384
           +
Sbjct: 229 Y 229


>gi|295425671|ref|ZP_06818358.1| transcription-repair coupling factor [Lactobacillus amylolyticus
           DSM 11664]
 gi|295064687|gb|EFG55608.1| transcription-repair coupling factor [Lactobacillus amylolyticus
           DSM 11664]
          Length = 1165

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 57/311 (18%), Positives = 127/311 (40%), Gaps = 29/311 (9%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           S+ K  L+ G      +  + +++   +   +V+  N+  A  +++E         V+YF
Sbjct: 21  SQVKNSLITGANAGAFSLLLKQIVTEKKVSLLVIEENENKAQNIFNELSGIMDDGQVQYF 80

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGI 284
                   P      T T +     ++ +I  +       LL +   +V+++   + Y +
Sbjct: 81  --------PVDSTLATQTALASPDELSSRIQTLNF-----LLGQKSGVVITTPQGLQYKL 127

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
            +V+ ++    +       +  E+   L+   Y R+ +    G F + GD ++I+P   E
Sbjct: 128 SAVKDFAAFKREFVQDKEYDLGEMNKWLLAAGYHREALVARPGEFAIRGDILDIYPLDQE 187

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           +   R+  FG++++ I EF   T +  R ++ + +      V     ++ A   IK  + 
Sbjct: 188 N-PVRIEFFGDEVDTIKEFDLSTQRSQREIKRLVVGPAQDRVFSADAISQAAAEIKAAMS 246

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                 E +    + + ++   T  L+ L   G   +      +L  +     P +L +Y
Sbjct: 247 ------ESKA---DQKAVKDHFTQVLDELNDGGLPSNYAFLIDFLIKK-----PSSLVDY 292

Query: 465 IPEDSLLFVDE 475
           + +D LLF+D+
Sbjct: 293 LAKDGLLFLDD 303


>gi|156373178|ref|XP_001629410.1| predicted protein [Nematostella vectensis]
 gi|156216410|gb|EDO37347.1| predicted protein [Nematostella vectensis]
          Length = 471

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 24/148 (16%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L   L    I V  +HS+    +R  I++  R GK  VL+   L+  
Sbjct: 297 VLIFVQSKDRAKELFHELIYDGINVDVIHSDRTQAQRDNIVKSFRTGKIWVLIATELMGR 356

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSIQ---- 698
           G+D     LV   D     F  S  + I  IGR  R       +  + +  T S++    
Sbjct: 357 GIDFKGVNLVINYD-----FPTSAVAYIHRIGRTGRAGRTGKAITFFTEEDTTSLRSIAN 411

Query: 699 -------------LAIDETTRRREKQLE 713
                        L I + +RR +K+LE
Sbjct: 412 VIKSSGCDVPDWMLKIKKASRREKKKLE 439


>gi|134102495|ref|YP_001108156.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|291004114|ref|ZP_06562087.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915118|emb|CAM05231.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 578

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 6/151 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK++ E+L E L  R      ++ ++    R   I  LR G+ D+LV  ++   
Sbjct: 244 MIVFVRTKQLTEELAEKLQARGFSAAAINGDIPQAARERTIGHLREGRVDILVATDVAAR 303

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE 703
           GLD+     V   D   +       S +  IGR  R   S + IL+     + +  +I++
Sbjct: 304 GLDVERISHVLNYDIPHD-----SESYVHRIGRTGRAGRSGEAILFVSPRERHMLRSIEK 358

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
            TR+   Q+E      +N Q + +    + D
Sbjct: 359 ATRQSIGQMELPSIEAVNDQRLAKFAQGITD 389


>gi|322495556|emb|CBZ30861.1| putative ATP-dependent RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 926

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK+MAED+   L+   I    +H + +  +R   + D +     +LV  ++   
Sbjct: 726 VLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPILVATDVASR 785

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP+   V   D  +E            IGR  R  N K I  A     + +LA+D
Sbjct: 786 GLDIPDVAHVVQFDLPQE-----MDDYTHRIGRTGRAGN-KGIATAFYNRNNRRLALD 837


>gi|218709841|ref|YP_002417462.1| helicase-like protein [Vibrio splendidus LGP32]
 gi|218322860|emb|CAV19037.1| Helicase-related protein [Vibrio splendidus LGP32]
          Length = 579

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 25/161 (15%)

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L + GF  P+ M + P+   +++ LRPT+       G ++ E    +++EQ  R T    
Sbjct: 189 LLDEGFLTPARMIDAPVLSYDFSQLRPTST------GRYK-ESELDMVIEQSKRAT---- 237

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
                         + D+I   A+  L I++   T R A+++   L E    +  +  + 
Sbjct: 238 ------------PQIVDQIIELAKDKLGIMVFAATVRHAQEILGLLPEGEASI--VIGDT 283

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
            TLER +II D +  K   LV +++L  G D P   L+AIL
Sbjct: 284 PTLERDQIISDFKERKIKFLVNVSVLTTGFDAPHVDLIAIL 324


>gi|148979671|ref|ZP_01815643.1| DNA or RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145961648|gb|EDK26946.1| DNA or RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 580

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 25/161 (15%)

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L + GF  P+ M + P+   +++ L+P      A+ G ++ E    +++EQ  R T    
Sbjct: 189 LLDEGFLTPARMIDAPVLSYDFSQLKP------ASTGRYK-EAELDMVIEQSKRAT---- 237

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
                         + D+I   AQ  L I++   T R A+++   L E    +  +  + 
Sbjct: 238 ------------PQIVDQIIHLAQDKLGIMVFAATVRHAQEILGLLPEGEAAI--VIGDT 283

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
            TLER +II D +  K   LV +++L  G D P   L+AIL
Sbjct: 284 PTLERDQIINDFKERKIKFLVNVSVLTTGFDAPHVDLIAIL 324


>gi|332074033|gb|EGI84511.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA41301]
          Length = 671

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|284989494|ref|YP_003408048.1| transcription-repair coupling factor [Geodermatophilus obscurus DSM
           43160]
 gi|284062739|gb|ADB73677.1| transcription-repair coupling factor [Geodermatophilus obscurus DSM
           43160]
          Length = 1179

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 78/174 (44%), Gaps = 20/174 (11%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+   +  A  +  + + F P    E F ++ +    E   PR DT   + + + + 
Sbjct: 54  PVLVVTAGERDADAVADQLRCFLPDRRTEVFPAW-ETLPHERLSPRADTVGRRLAVLRD- 111

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELL 309
              + H      ++    ++V+ V  +      G+G +     + V+L+ GD+ E  ++ 
Sbjct: 112 ---LTHPGANGTID----VLVAPVRSVLQPLAPGLGDL-----VPVELRPGDTAELDDVA 159

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            +L    Y R ++   RG F V G  +++FP   E    RV  +G++++E+  F
Sbjct: 160 RALADAAYTRVELVEKRGEFAVRGGLLDVFPP-TEPHPVRVEFWGDEVDELRYF 212


>gi|212634585|ref|YP_002311110.1| transcription-repair coupling factor [Shewanella piezotolerans WP3]
 gi|212556069|gb|ACJ28523.1| Transcription-repair coupling factor [Shewanella piezotolerans WP3]
          Length = 1158

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 49/252 (19%), Positives = 106/252 (42%), Gaps = 17/252 (6%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            + S    Q L  + G+ +  T+A + +  Q   +V+  +   A  L +E        A+
Sbjct: 12  AVKSANLAQTLCTIGGAAQALTIANIAKQHQGVTLVVTADTPSAIALETELSYLLSETAM 71

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
             ++            P  +T      S ++ +   R  A   + +    +V+  +S + 
Sbjct: 72  SIWL-----------FPDRETLPYDSFSPHQDLVSQRLEALSRIPQAQHSVVIVPISTLM 120

Query: 283 GIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                +S+ S  ++ L+ GD+ +  ++   L+   Y   +     G F V G  I+IFP 
Sbjct: 121 VKLPPQSFLSGNVLILEKGDNYQLHDVREQLINTGYHSVEQVYEHGEFAVRGSIIDIFPM 180

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
              +  +R+ +F +++E I  F P T +  + + +I++     +    PT ++A++  ++
Sbjct: 181 G-SNQPFRIELFDDEVESIRHFDPETQRSSQEIASIRLLPAKEF----PTDDSAIEGFRQ 235

Query: 402 ELKMRLIELEKE 413
             + R   L KE
Sbjct: 236 RYRRRFEVLVKE 247



 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           + KR AE ++E L E   RV   H +++  E   ++ D    +F+VLV   ++  G+D+P
Sbjct: 831 IEKRAAE-ISELLPE--ARVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVP 887

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
               + I  ADK G       L Q  GR  R+
Sbjct: 888 SANTIVIERADKFGL----AQLHQLRGRVGRS 915


>gi|160888241|ref|ZP_02069244.1| hypothetical protein BACUNI_00650 [Bacteroides uniformis ATCC 8492]
 gi|156862187|gb|EDO55618.1| hypothetical protein BACUNI_00650 [Bacteroides uniformis ATCC 8492]
          Length = 428

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 9/107 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   +++T+ L +  + V  MHS+++  +R E++ + + G+ ++LV  +++ 
Sbjct: 246 RVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVA 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+DI +  LV   D   D E +       +  IGR AR  N  V +
Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGVAI 345


>gi|94501919|ref|ZP_01308429.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
 gi|94425972|gb|EAT10970.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
          Length = 614

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  E++ +Y+    +R   ++ +V   +R   +  L+ G+ D+LV  ++   
Sbjct: 248 MMVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDMLVATDVAAR 307

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  + + IL+     + +   I+
Sbjct: 308 GLDVERISHVVNYDIPYDAESYVHR----IGRTGRAGR--SGEAILFVRPRERRMLSTIE 361

Query: 703 ETTRRREKQLEHNKKHNIN 721
             TR++ +Q+E      +N
Sbjct: 362 RVTRKKIQQIELPTAKEVN 380


>gi|312984225|ref|ZP_07791571.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus CTV-05]
 gi|310894444|gb|EFQ43520.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus CTV-05]
          Length = 678

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 17/188 (9%)

Query: 522 RPTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           +P  + ++ATP   +  L     + V +I        P +      +Q+++VY ++    
Sbjct: 403 QPDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISTWKTSSQMKEVYRQMQEQL 462

Query: 580 QQGLRI-----LLT---VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLR 629
            QG +I     L+T    L  + AE+L E L     N +V  +H ++   ++ EI+    
Sbjct: 463 NQGFQIYAVTPLITESETLDLKNAEELHEKLSHDFPNHKVVLLHGQMPGAQKDEIMTAFA 522

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVIL 688
            G+ D+LV  +++  G+D+    ++ I +AD+ G     + L Q  GR  R    S  + 
Sbjct: 523 AGEIDILVTTSVIEVGVDVANANMMVIYNADRFGL----SQLHQLRGRIGRGQTQSYCVF 578

Query: 689 YADTITKS 696
            AD  T S
Sbjct: 579 LADPKTDS 586



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 560 EIRSART--QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T   V  ++  I    Q  L +   +L  +  + + E L    +RV  +    K
Sbjct: 284 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 343

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           TLER EI R+L  G  +V++G + L+++ +   + GLV I
Sbjct: 344 TLERCEIYRELTDGTINVVIGTHALIQDSVIFKKLGLVII 383


>gi|166714770|gb|ABY88098.1| UvrB [Stenotrophomonas sp. LMG 11087]
          Length = 60

 Score = 45.8 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 33/54 (61%)

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
           I++FP+  +  A R+ +F  ++E+I+ F PLTG+ +R +    +Y  +HY   R
Sbjct: 2   IDVFPAESDSEALRIELFDGEVEKITMFDPLTGENMRKLMRFTVYPKTHYADTR 55


>gi|169834385|ref|YP_001695073.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168996887|gb|ACA37499.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 671

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|148984139|ref|ZP_01817434.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus
           pneumoniae SP3-BS71]
 gi|225861521|ref|YP_002743030.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|147923428|gb|EDK74541.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus
           pneumoniae SP3-BS71]
 gi|225728405|gb|ACO24256.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|301800505|emb|CBW33144.1| ATP-dependent DNA helicase [Streptococcus pneumoniae OXC141]
 gi|327389882|gb|EGE88227.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA04375]
 gi|332200255|gb|EGJ14328.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA47368]
          Length = 671

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTTH-FAGKTEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|116513512|ref|YP_812418.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116092827|gb|ABJ57980.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 1158

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 65/322 (20%), Positives = 129/322 (40%), Gaps = 35/322 (10%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           SR K  LL GV        +   +  + +P +++  N+  A + Y++       + +E F
Sbjct: 21  SRIKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERYNDLSRLLADDDLELF 80

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
               +          T T +     ++ +I          L  R   ++ +     Y + 
Sbjct: 81  ALDGNL--------ATQTAVSSPDELSSRI----QCLNLLLSGRPGVVIATPQGLQYPLS 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +   + +      +GD +   +L   L +  Y R+++ +  G F + GD ++++P   E 
Sbjct: 129 APALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRES 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+  FG++I+ I  F  LT Q  R++E +          P  T+  A  ++      
Sbjct: 189 -PLRLEFFGDEIDTIKTF-DLTSQ--RSLEEL----------PEATVPAASDHV-----F 229

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEML-ETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
              +L++ GR L A  L +     LE+  E   + Q  ++ +RYL    P     +L +Y
Sbjct: 230 TAEDLDRAGREL-AGDLPKEAAASLEIAQEALANGQLPDDCNRYLDYLLP--KSFSLLDY 286

Query: 465 IPEDSLLFVDESHVTIPQISGM 486
           +P   LL  ++  +    +  M
Sbjct: 287 LPAKGLLLFNDWQLIAESVKNM 308


>gi|327481347|gb|AEA84657.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri DSM
           4166]
          Length = 1145

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 115/307 (37%), Gaps = 55/307 (17%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+     +R  +++  +   A +L  E   F P   V +F  +    YD 
Sbjct: 18  LPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAFFAPELPVLHFPDWETLPYDL 77

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P   +      + +  +   Q+  + H            +VV   + ++ +       
Sbjct: 78  FSPHQDI------VSQRIATLYQLPELSHG----------VLVVPITTALHRLAPKRFLL 121

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++ +++   L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 122 GSSLVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMG-SALPYRID 180

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P   + I  VE+I++                       L  R   L+
Sbjct: 181 LFDDEIETLRTFDPENQRSIDMVESIRL-----------------------LPAREFPLK 217

Query: 412 KEGRLLEAQRLEQRITYDL------EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           KE       R  +R   D       + L T  +   IE Y          E   TLF+Y+
Sbjct: 218 KEAVTGFRARFRERFDVDFRRCPIYQDLSTGITPAGIEYYLPLFY-----EETATLFDYL 272

Query: 466 PEDSLLF 472
           PEDS +F
Sbjct: 273 PEDSQVF 279



 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 33/131 (25%)

Query: 605 RNIRVRYMHSEVKTLERI--------------------------EIIRDLRLGKFDVLVG 638
           R  +V Y+H++VKT+E+                           +++ D    +F+VLV 
Sbjct: 804 RGGQVYYLHNDVKTIEKCAADLQTLVPEARIAIGHGQMRERDLEQVMSDFYHKRFNVLVA 863

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + I  ADK G       L Q  GR  R+ +     YA  +T   +
Sbjct: 864 STIIETGIDVPSANTIIIERADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPPRK 916

Query: 699 LAIDETTRRRE 709
              D+  +R E
Sbjct: 917 AMTDDAQKRLE 927


>gi|281206201|gb|EFA80390.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 804

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 23/147 (15%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM---------HSEVK-----TLERIEIIRD 627
             + +L V T++ AE L + L  R    RY          H   K     T  + +I+  
Sbjct: 555 AFKAILFVKTRQSAEQLVKVLTTRAKEERYKFLKPGKVSGHGSTKSGGQSTASQKDIVEK 614

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDA--------DKEGFLRSKTSLIQTIGRA- 678
            R G+ +V+V   +L EGLD+PEC +V  +D+           G LRSK S    I +  
Sbjct: 615 FRSGQHNVIVATAVLEEGLDVPECNVVIRIDSPATVTAYTQSRGRLRSKKSEFYAILKDF 674

Query: 679 ARNVNSKVILYADTITKSIQLAIDETT 705
             N+ + ++     I ++I+   DE T
Sbjct: 675 ESNIYANLMKQEFYIKEAIEYLSDENT 701


>gi|148244288|ref|YP_001218982.1| primosomal protein N' [Candidatus Vesicomyosocius okutanii HA]
 gi|146326115|dbj|BAF61258.1| primosomal protein N' [Candidatus Vesicomyosocius okutanii HA]
          Length = 680

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 144 QTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMA 200
           Q D+ P+ +Q  AI Q+LK  +      LL GVTGSGKT     +I++M   ++  +V+ 
Sbjct: 146 QPDFQPTDEQNIAIEQILKSTNQYHAF-LLHGVTGSGKTEVYLHIIQSMIDQKKQVLVLV 204

Query: 201 PNKILAAQLYSEFKN 215
           P   L  Q+ + FK+
Sbjct: 205 PEIGLTPQMITHFKS 219


>gi|116516080|ref|YP_816963.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae D39]
 gi|116076656|gb|ABJ54376.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae D39]
          Length = 671

 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|319948348|ref|ZP_08022492.1| ATP-dependent DNA helicase RecG [Dietzia cinnamea P4]
 gi|319437979|gb|EFV92955.1| ATP-dependent DNA helicase RecG [Dietzia cinnamea P4]
          Length = 756

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 7/90 (7%)

Query: 595 AEDLTEYLYE---RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           A DL EYL       +R+  +H  + + E+   + D   G+ DVLV   ++  G+D+PE 
Sbjct: 558 AVDLHEYLSTGPLAGLRIGLLHGRLPSEEKDATMADFAAGRLDVLVSTTVIEVGVDVPEA 617

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            ++ ++DA++ G     + L Q  GR  R 
Sbjct: 618 TVMVVMDAERFGV----SQLHQLRGRVGRG 643


>gi|307200175|gb|EFN80473.1| ATP-dependent RNA helicase bel [Harpegnathos saltator]
          Length = 611

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 55/128 (42%), Gaps = 10/128 (7%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRI-LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           VE    R+ + D+    N A      + L+ V TK+ A+ L EYL +    V  +H +  
Sbjct: 455 VEEHDKRSYLLDLLQASNFADSSAESLTLVFVETKKGADMLEEYLAQMGYPVTSIHGDRT 514

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTI 675
             ER E +R  R GK  +LV   +   GLDIP    V   D   D E +       +  I
Sbjct: 515 QREREEALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEY-------VHRI 567

Query: 676 GRAARNVN 683
           GR  R  N
Sbjct: 568 GRTGRMGN 575


>gi|227878872|ref|ZP_03996777.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01]
 gi|256849792|ref|ZP_05555223.1| ATP-dependent DNA [Lactobacillus crispatus MV-1A-US]
 gi|262046963|ref|ZP_06019923.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus MV-3A-US]
 gi|227861506|gb|EEJ69120.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01]
 gi|256713281|gb|EEU28271.1| ATP-dependent DNA [Lactobacillus crispatus MV-1A-US]
 gi|260572945|gb|EEX29505.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus MV-3A-US]
          Length = 678

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 17/188 (9%)

Query: 522 RPTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           +P  + ++ATP   +  L     + V +I        P +      +Q+++VY ++    
Sbjct: 403 QPDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISTWKTSSQMKEVYRQMQEQL 462

Query: 580 QQGLRI-----LLT---VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLR 629
            QG +I     L+T    L  + AE+L E L     N +V  +H ++   ++ EI+    
Sbjct: 463 NQGFQIYAVTPLITESETLDLKNAEELHEKLSHDFPNHKVVLLHGQMPGAQKDEIMTAFA 522

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVIL 688
            G+ D+LV  +++  G+D+    ++ I +AD+ G     + L Q  GR  R    S  + 
Sbjct: 523 AGEIDILVTTSVIEVGVDVANANMMVIYNADRFGL----SQLHQLRGRIGRGQTQSYCVF 578

Query: 689 YADTITKS 696
            AD  T S
Sbjct: 579 LADPKTDS 586



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 560 EIRSART--QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T   V  ++  I    Q  L +   +L  +  + + E L    +RV  +    K
Sbjct: 284 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 343

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           TLER EI R+L  G  +V++G + L+++ +   + GLV I
Sbjct: 344 TLERREIYRELTDGTINVVIGTHALIQDSVIFKKLGLVII 383


>gi|168493601|ref|ZP_02717744.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           CDC3059-06]
 gi|183576417|gb|EDT96945.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           CDC3059-06]
          Length = 671

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|15903582|ref|NP_359132.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae R6]
 gi|1150620|emb|CAA90280.1| MmsA [Streptococcus pneumoniae]
 gi|15459203|gb|AAL00343.1| Branch migration of Holliday junctions, junction-specific DNA
           helicase [Streptococcus pneumoniae R6]
 gi|1588991|prf||2209420A mmsA gene
          Length = 671

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|296116131|ref|ZP_06834749.1| transcription-repair coupling factor [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977237|gb|EFG83997.1| transcription-repair coupling factor [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 1157

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 7/143 (4%)

Query: 231 YYQPEAYV---PRTDTYIEKESSINEQIDRMRHSATRSLLER--NDCIVVSSVS-CIYGI 284
           +  P+A +   P  D       S N  I   R +    LLE+     IV+++V+  I  +
Sbjct: 58  FIAPDAEILRFPAWDCLPYDRVSPNPAIVAERVATLTCLLEKPTRPRIVLTTVNGLIQRV 117

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
               +++   + +  G++++Q+ L+  LV   Y R D  +  G F   G   +IFP+  E
Sbjct: 118 APRRAFAGQSLNIATGEALDQEFLIELLVANGYNRTDTVMEPGEFATRGGIFDIFPAG-E 176

Query: 345 DVAWRVSMFGNDIEEISEFYPLT 367
               R+ +FG+++E I  F P T
Sbjct: 177 AEPVRLDLFGDEVENIRGFDPAT 199


>gi|284054715|ref|ZP_06384925.1| type III restriction enzyme, res subunit [Arthrospira platensis
           str. Paraca]
          Length = 493

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 22/162 (13%)

Query: 574 EINLAAQQGLRILLTVLTKRMAE--------DLTEYLYERNIRVRYMHSEVKTLERIEII 625
           EI L     LRIL  +L++   E        + T Y   ++  +  +  +    ER +I+
Sbjct: 315 EIALCTDGKLRILGDILSQNYPERTLIFTVDNTTVYRISQDFLIPAITHQTPVKERHQIL 374

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NV 682
              R G +  LV  ++L EG+D+P+  +  IL         S+   IQ +GR  R     
Sbjct: 375 DKFRQGDYRTLVASHVLNEGVDVPDAKIAIILSGTG-----SEREYIQRLGRVLRKGSQT 429

Query: 683 NSKVILYADTITKSIQLAIDETT--RRREKQLEHNKKHNINP 722
             + +LY + IT++     +E T  RRR  Q    +K  I+P
Sbjct: 430 GKRAVLY-EVITENTS---EEQTSQRRRGHQKPQREKPKISP 467


>gi|119190771|ref|XP_001245992.1| hypothetical protein CIMG_05433 [Coccidioides immitis RS]
          Length = 1435

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 13/97 (13%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DLR GK D+++   +L EG+D+P C LV   D  K+  LR   S IQ  GR AR   S
Sbjct: 472 IDDLRTGKKDLIIATAVLEEGIDVPICDLVICFDLPKD--LR---SFIQRRGR-ARKKGS 525

Query: 685 K--VILYADTITKSIQLAIDETTRRR-----EKQLEH 714
           K  + L+++    S +L + E T ++     ++ LEH
Sbjct: 526 KFALFLHSEDRATSSELHLMEKTMKQLYLENKRALEH 562


>gi|54026165|ref|YP_120407.1| ATP-dependent DNA helicase RecG [Nocardia farcinica IFM 10152]
 gi|54017673|dbj|BAD59043.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152]
          Length = 755

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++RV  +H  +   E+ E++R    G  DVLV   ++  G+D+P   ++ I+DAD+ G  
Sbjct: 571 SVRVGLLHGRLPADEKDEVMRAFHEGAVDVLVCTTVVEVGVDVPNATVMVIVDADRFGV- 629

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R  +  + L
Sbjct: 630 ---SQLHQLRGRIGRGAHPGLCL 649


>gi|225446899|ref|XP_002284103.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 666

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G + ++   TKR A+ L  Y   RN R   +H ++   +R   +   R G F+VLV  +
Sbjct: 359 KGGKCIVFTQTKRDADRLA-YAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATD 417

Query: 641 LLREGLDIPECGLV 654
           +   GLDIP   L+
Sbjct: 418 VAARGLDIPNVDLI 431


>gi|156844392|ref|XP_001645259.1| hypothetical protein Kpol_1060p58 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160395530|sp|A7TK55|IF4A_VANPO RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|156115918|gb|EDO17401.1| hypothetical protein Kpol_1060p58 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 396

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 7/100 (7%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           + D+YD I++      + ++   T+R  E+LT+ L E N  V  ++S++   ER  I+++
Sbjct: 252 LSDLYDSISVT-----QAVIFCNTRRKVEELTQKLTESNFTVSSIYSDLPQQERDVIMKE 306

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            R G   +L+  +LL  G+D+ +  LV   D   +KE ++
Sbjct: 307 FRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYI 346


>gi|239631975|ref|ZP_04675006.1| ATP-dependent DNA helicase RecG [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526440|gb|EEQ65441.1| ATP-dependent DNA helicase RecG [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 453

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H ++K  E+ +I+R    GK  VLV   ++  G+D+P   ++AI DAD+ G     
Sbjct: 276 VALLHGQMKPDEKDQIMRAFSDGKIAVLVSTTVVEVGVDVPNATVMAIFDADRFGL---- 331

Query: 669 TSLIQTIGRAARNVN-SKVILYAD 691
           + L Q  GR  R    ++ +L AD
Sbjct: 332 SQLHQLRGRVGRGQKAAQCLLIAD 355



 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 3/100 (3%)

Query: 560 EIRSARTQVEDV--YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T V  +  Y  +    Q  L +   VL ++    LT+   +  +++  +     
Sbjct: 57  DVGSGKTIVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTS 116

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           T +R E++ +LR G+ ++++G + L+++G+D    GLV I
Sbjct: 117 TKKRRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVI 156


>gi|221232431|ref|YP_002511584.1| ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC 700669]
 gi|225855125|ref|YP_002736637.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae JJA]
 gi|298229863|ref|ZP_06963544.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255737|ref|ZP_06979323.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298503441|ref|YP_003725381.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           TCH8431/19A]
 gi|220674892|emb|CAR69467.1| ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC 700669]
 gi|225723598|gb|ACO19451.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae JJA]
 gi|298239036|gb|ADI70167.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           TCH8431/19A]
 gi|332199722|gb|EGJ13797.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA41317]
          Length = 671

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|254442721|ref|ZP_05056197.1| primosomal protein N', putative [Verrucomicrobiae bacterium DG1235]
 gi|198257029|gb|EDY81337.1| primosomal protein N', putative [Verrucomicrobiae bacterium DG1235]
          Length = 749

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           EI+ + R GK D+LVG  ++ +GLD P   LV ++DAD    +       R+   L+Q  
Sbjct: 544 EILGEFRKGKIDLLVGTQMIAKGLDFPNVTLVGMVDADLSLHVPDFRANERTFQLLVQVS 603

Query: 676 GRAARN 681
           GRA R 
Sbjct: 604 GRAGRG 609


>gi|194396798|ref|YP_002038308.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae G54]
 gi|194356465|gb|ACF54913.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae G54]
          Length = 671

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|168699230|ref|ZP_02731507.1| putative helicase, ATP-dependent [Gemmata obscuriglobus UQM 2246]
          Length = 461

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A++ T Y   R   +  M ++ K  ER  I+ +   G F+ +V   +L EG+D+P  G+ 
Sbjct: 348 ADNATVYEVARRYLIPAMTNQTKPKERKAILANFHSGAFNAVVTCQVLNEGVDVPAAGVG 407

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
            +L         S T  +Q +GR  R    K  +  + IT++         RR+ +  +
Sbjct: 408 IVLAGTG-----SATENVQRLGRILRKYADKQAVLYEVITRNTAEEFVSDRRRQHRAFQ 461


>gi|148989348|ref|ZP_01820716.1| hypothetical protein CGSSp6BS73_07619 [Streptococcus pneumoniae
           SP6-BS73]
 gi|149021207|ref|ZP_01835453.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP23-BS72]
 gi|147925098|gb|EDK76178.1| hypothetical protein CGSSp6BS73_07619 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147930308|gb|EDK81292.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP23-BS72]
          Length = 671

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|329944345|ref|ZP_08292591.1| conserved domain protein [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328530569|gb|EGF57435.1| conserved domain protein [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 561

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 10/151 (6%)

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            +++ P + V    ++      E   PR DT  ++ S +          A R L+     
Sbjct: 115 LRSYLPADDVAVMPAWETLPH-ERLSPRADTVAQRLSVLRRLAHPEEGGAIRVLVVPVRA 173

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++      I G+G +E      V L  G +V  +E    L    Y R D+   RG + V 
Sbjct: 174 LLAP---VIAGLGELEP-----VHLAPGLAVGLEETARRLEAAAYTRVDMVESRGEYAVR 225

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           G  +++FP   E    RV  FG++I+E+S F
Sbjct: 226 GGILDVFPPS-EPRPVRVDFFGDEIDEVSSF 255


>gi|308502287|ref|XP_003113328.1| hypothetical protein CRE_25199 [Caenorhabditis remanei]
 gi|308265629|gb|EFP09582.1| hypothetical protein CRE_25199 [Caenorhabditis remanei]
          Length = 698

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A DL  YL  +N +V  +H ++K  ER + +   R G   +LV   +   G
Sbjct: 492 LVFVETKRGASDLAYYLSRQNYQVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARG 551

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D  +D + ++    +T  +  +G A    N K
Sbjct: 552 LDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDK 595


>gi|158706444|sp|Q1DW80|DCL2_COCIM RecName: Full=Dicer-like protein 2; Includes: RecName:
           Full=Endoribonuclease DCL2; Includes: RecName:
           Full=ATP-dependent helicase DCL2
          Length = 1478

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 13/97 (13%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DLR GK D+++   +L EG+D+P C LV   D  K+  LR   S IQ  GR AR   S
Sbjct: 515 IDDLRTGKKDLIIATAVLEEGIDVPICDLVICFDLPKD--LR---SFIQRRGR-ARKKGS 568

Query: 685 K--VILYADTITKSIQLAIDETTRRR-----EKQLEH 714
           K  + L+++    S +L + E T ++     ++ LEH
Sbjct: 569 KFALFLHSEDRATSSELHLMEKTMKQLYLENKRALEH 605


>gi|103487138|ref|YP_616699.1| transcription-repair coupling factor [Sphingopyxis alaskensis
           RB2256]
 gi|98977215|gb|ABF53366.1| transcription-repair coupling factor [Sphingopyxis alaskensis
           RB2256]
          Length = 1194

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q+   L  G  +++  L   LV   + R D    +G F V G  +++FP+  E+   RV 
Sbjct: 130 QLATTLAAGQRIDRDALAELLVANGFSRVDTVADQGEFAVRGGLLDLFPAG-EETGLRVD 188

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
            FG++IE I  F P   + +   + +++   S
Sbjct: 189 FFGDEIESIRRFDPADQRSLGAAKALQLLPAS 220



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 10/118 (8%)

Query: 597 DLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           D+ EYL  R   ++Y+  H ++   E  E +      K+DVLV   ++  GLDIP    +
Sbjct: 868 DIEEYLRTRVPEIKYVVAHGQMGAQEVEERMSAFYDRKYDVLVSTTIVESGLDIPSANTL 927

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
            +  AD+ G       L Q  GR  R   SK   YA  +T     AI +T  +R K L
Sbjct: 928 IVHRADRFGL----AQLYQLRGRVGR---SKTRAYA-YLTTPDGGAITDTAEKRLKLL 977


>gi|332201120|gb|EGJ15191.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA47901]
          Length = 671

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|312284067|ref|NP_001186061.1| probable ATP-dependent RNA helicase DHX58 [Sus scrofa]
 gi|229473596|gb|ACQ73327.1| LGP2 [Sus scrofa]
          Length = 681

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+I+  R G  ++LV  ++  EGLDIP+C +V      + G L ++ S++Q  GRA
Sbjct: 425 EVIQKFRTGALNLLVATSVAEEGLDIPQCNVVV-----RYGLLTNEISMVQARGRA 475


>gi|225859451|ref|YP_002740961.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae 70585]
 gi|225721463|gb|ACO17317.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae 70585]
          Length = 671

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|208435387|ref|YP_002267053.1| DNA recombinase [Helicobacter pylori G27]
 gi|208433316|gb|ACI28187.1| DNA recombinase [Helicobacter pylori G27]
          Length = 623

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177
           N KI  P+ S  ++N       F     +  + DQ  AI ++   + S    + L++G  
Sbjct: 209 NAKIACPNNSERLDN-------FIASLPFKLTCDQQNAIKEIQSDLTSSIACKRLIIGDV 261

Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           G GKT   +A ++ A     ++MAP  ILA QLY+E   F P
Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|192358851|ref|YP_001982241.1| transcription-repair coupling protein Mfd [Cellvibrio japonicus
           Ueda107]
 gi|190685016|gb|ACE82694.1| transcription-repair coupling protein Mfd [Cellvibrio japonicus
           Ueda107]
          Length = 1184

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G+ ++  +L  +L +  Y   D     G F V G  ++IFP    D+ +R+ +F 
Sbjct: 165 LMLAVGEQLDIDQLRHNLERAGYHAVDTVYEHGEFAVRGALLDIFPMG-SDLPYRIDLFD 223

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           +++E +  F P T   I  VE I++     +   +P +N
Sbjct: 224 DEVETLRTFDPETQMTIDKVEKIQLLPAKEFPLNKPGIN 262



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +++A +L E + E  I V +     + LER+  + D    +F+++V   ++  G+DIP  
Sbjct: 861 EKVARELQELIPEARIAVGHGQMRERDLERV--MSDFYHKRFNIMVCTTIIETGIDIPSA 918

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             + I  ADK G       L Q  GR  R+ +     YA  +T   +   D+  +R E
Sbjct: 919 NTIIINRADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPERRAMTDDAVKRLE 969


>gi|167751280|ref|ZP_02423407.1| hypothetical protein EUBSIR_02266 [Eubacterium siraeum DSM 15702]
 gi|167655787|gb|EDR99916.1| hypothetical protein EUBSIR_02266 [Eubacterium siraeum DSM 15702]
          Length = 1175

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 15/218 (6%)

Query: 164 IHSREKVQLLL-GVTGSGKTFTMAKVI-EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
           I S E V LL+ G++   K   +A +  E +  P +V+  ++  AA+L  +        A
Sbjct: 21  ILSDEPVPLLVTGLSHIHKAHFLASLCYEKLPSPVLVITESEASAAKLTEDINTMCGDTA 80

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
              F        P + +   DT  + +    ++I+ +    + +L  +   I+ SS + +
Sbjct: 81  AYQF--------PASDLTLADTEAQSQEYEYKRIETL----SAALSGKARLIISSSEAAV 128

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                 +   +  V LK GD ++  EL + LV   Y R D+   +G F   G   +I+P 
Sbjct: 129 QLTVPKDVLEKHTVTLKAGDEIKLDELATMLVSAGYTRCDMIEGKGQFSFRGSLADIYPV 188

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
              D   R+ ++G++I+ ++ F   T ++I  V+++ I
Sbjct: 189 S-SDYPVRIELWGDEIDTVASFDIDTQRRIDTVKSVSI 225



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A D+   + E NI +   H  +   E + + R L  G+ DVLV   L+  G+D+P C  +
Sbjct: 842 AADIHSMVPEANIGI--AHGRMSEEELLNVWRRLIEGEIDVLVCTTLIETGVDVPNCNTL 899

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681
            I +AD  G       L Q  GR  R 
Sbjct: 900 IIENADCMGL----AQLHQLRGRVGRT 922


>gi|147784525|emb|CAN61726.1| hypothetical protein VITISV_032421 [Vitis vinifera]
          Length = 554

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ILL V +K  A++L   L   +IRV  +H+++   +R   + D R GK  VL+  +++  
Sbjct: 366 ILLFVQSKERAKELYTELAFDDIRVDVIHADLSQSQRENAVDDFRAGKTWVLIATDVIAR 425

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G+  +++ D   F  S  + I  IGR+ R
Sbjct: 426 GMDFK--GINCVINYD---FPDSPAAYIHRIGRSGR 456


>gi|146295099|ref|YP_001178870.1| type III restriction enzyme, res subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145408675|gb|ABP65679.1| type III restriction enzyme, res subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 899

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 8/108 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK---TLERIEIIRDLRLGKFDVLVGIN 640
           + L    ++  AE + +Y  +  ++   ++S  +    L+R E IR L+ G+  V+  ++
Sbjct: 517 KTLAFCCSRNHAEFMADYFNKNGVKCCAVYSGEQGKNALQRSEAIRKLKNGQIKVIFTVD 576

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +  EG+DIPE  +V  L   +     S T  +Q +GR  R   +K  L
Sbjct: 577 MFNEGVDIPEIDMVMFLRPTE-----SPTVFLQQLGRGLRKAKNKNYL 619


>gi|223932903|ref|ZP_03624899.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|330833198|ref|YP_004402023.1| DEAD/DEAH box helicase domain-containing protein [Streptococcus
           suis ST3]
 gi|223898484|gb|EEF64849.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|329307421|gb|AEB81837.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST3]
          Length = 526

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ +IRD +  + DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R   S + I +           I++ T++R 
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLAIIEDLTKKRM 362

Query: 710 KQLE 713
           K L+
Sbjct: 363 KGLK 366


>gi|311245447|ref|XP_003121832.1| PREDICTED: Fanconi anemia group M protein-like [Sus scrofa]
          Length = 2053

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 15/115 (13%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM----HSEVKTL------ERIEIIRDLRLGKF 633
           R+++    +   +++ E L      +R M    H+  K++      E++E+++  R G +
Sbjct: 487 RVMIFSSFRDSVQEIAEMLLRHQPIIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGY 546

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + LV   +  EGLDI E  L+   DA K     S   L+Q +GR  R    ++++
Sbjct: 547 NTLVSTCVGEEGLDIGEVDLIICFDAQK-----SPIRLVQRMGRTGRKRQGRIVV 596


>gi|153835235|ref|ZP_01987902.1| transcription-repair coupling factor [Vibrio harveyi HY01]
 gi|148868273|gb|EDL67407.1| transcription-repair coupling factor [Vibrio harveyi HY01]
          Length = 1153

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 61/299 (20%), Positives = 124/299 (41%), Gaps = 36/299 (12%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L  + G+     +A++ +     ++++ P+  +A +L +E + F      +  VS +  +
Sbjct: 21  LGNLPGAALAMAIAELAKQHSSHSLLVVPDPQIALKLQAEIEQF-----TDQPVSLFPDW 75

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           +   Y    D +   +  I+++I R+    T+S    N   +V   + +      +   Q
Sbjct: 76  ETLPY----DNFSPHQEIISDRIARLYQLPTQS----NGVTIVPVSTVLQRKSPRDFLLQ 127

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             + +K GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  
Sbjct: 128 HTLMVKTGDQFSLDKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PYRIDF 186

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           F ++I+ I  F P   + I +++ I++     +    PT   A++  +   + +      
Sbjct: 187 FDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEF----PTTKAAIEDFRTRWRSQF----- 237

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                EA+R  + I     M  T G+  +   Y + L   +      TLF+Y+PEDS L
Sbjct: 238 -----EARREPESIY----MQVTKGTWPAGIEYWQPLFFDHT----ETLFDYLPEDSQL 283


>gi|149006640|ref|ZP_01830339.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP18-BS74]
 gi|307127909|ref|YP_003879940.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae 670-6B]
 gi|147761938|gb|EDK68901.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP18-BS74]
 gi|306484971|gb|ADM91840.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae 670-6B]
 gi|332072867|gb|EGI83348.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA17545]
          Length = 671

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|15901531|ref|NP_346135.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae TIGR4]
 gi|111657513|ref|ZP_01408256.1| hypothetical protein SpneT_02001279 [Streptococcus pneumoniae
           TIGR4]
 gi|225857310|ref|YP_002738821.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae P1031]
 gi|18279285|sp|Q54900|RECG_STRPN RecName: Full=ATP-dependent DNA helicase recG
 gi|14973191|gb|AAK75775.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae TIGR4]
 gi|225725262|gb|ACO21114.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae P1031]
          Length = 671

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|71662019|ref|XP_818022.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70883249|gb|EAN96171.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 792

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TKR AE+L   L    I    +H + +  +R   +RD + G   +LV  ++   
Sbjct: 590 VLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRDFKDGITPILVATDVASR 649

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           GLD+P    V   D  KE  +   T  I   GRA 
Sbjct: 650 GLDVPNVAHVIQYDLPKE--MDDYTHRIGRTGRAG 682


>gi|316963063|gb|EFV48890.1| conserved hypothetical protein [Trichinella spiralis]
          Length = 654

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 44/189 (23%)

Query: 518 WNCLRPTTIVVSATPGS--------WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           WNC+R       +TPGS        ++LE+      E   +  G   PP +I      + 
Sbjct: 84  WNCIR------QSTPGSLLYSGELNFQLEKNNSRKFENTNQANG---PPFQI------LI 128

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D   ++   +   L +   V+  RM+ ++ E  + R               + E++++ R
Sbjct: 129 DTAKKLQPRSYSYLEVDY-VVGSRMSAEVAEPSFAR---------------QEEVLKNFR 172

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GK ++L   ++L EG+D+  C  V   D        +  S +Q+ GRA + +    IL 
Sbjct: 173 HGKLNLLAATSILEEGIDVRHCNYVIRFDTP-----LTFRSFVQSKGRARQKIAYYTILV 227

Query: 690 ADTITKSIQ 698
            D   KS Q
Sbjct: 228 QDRFLKSFQ 236


>gi|301066660|ref|YP_003788683.1| recG-like helicase [Lactobacillus casei str. Zhang]
 gi|300439067|gb|ADK18833.1| RecG-like helicase [Lactobacillus casei str. Zhang]
          Length = 718

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H ++K  E+ +I+R    GK  VLV   ++  G+D+P   ++AI DAD+ G     
Sbjct: 541 VALLHGQMKPDEKDQIMRAFSDGKIAVLVSTTVVEVGVDVPNATVMAIFDADRFGL---- 596

Query: 669 TSLIQTIGRAARNVN-SKVILYAD 691
           + L Q  GR  R    ++ +L AD
Sbjct: 597 SQLHQLRGRVGRGQKAAQCLLIAD 620



 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 3/100 (3%)

Query: 560 EIRSARTQVEDV--YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T V  +  Y  +    Q  L +   VL ++    LT+   +  +++  +     
Sbjct: 322 DVGSGKTIVAAIVLYAAVTAGFQAALMVPTEVLAEQHFAKLTKLFKDFPVKLGLLTGSTS 381

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           T +R E++ +LR G+ ++++G + L+++G+D    GLV I
Sbjct: 382 TKKRRELLSELRDGRLNLIIGTHALIQKGVDFHALGLVVI 421


>gi|296133598|ref|YP_003640845.1| ATP-dependent DNA helicase RecG [Thermincola sp. JR]
 gi|296032176|gb|ADG82944.1| ATP-dependent DNA helicase RecG [Thermincola potens JR]
          Length = 808

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 6/101 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A+ L + ++  ++R+  +H  +K  E+ ++++  R GK D+LV   ++  G+++P   ++
Sbjct: 615 ADRLAQVVFP-DLRIGLLHGRMKADEKEQVMKAFRDGKIDILVATTVIEVGVNVPNATVM 673

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTIT 694
            I DA++ G       L Q  GR  R  + S  IL AD  T
Sbjct: 674 VIEDAERFGL----AQLHQLRGRVGRGSHQSYCILLADPKT 710


>gi|288554498|ref|YP_003426433.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288545658|gb|ADC49541.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 502

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L +R  R   +H ++   +R  ++R  + G  DVLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALTKRGYRAEGIHGDLNQAKRDSVLRKFKNGLVDVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+  + + D     +   S +  IGR  R   S + L
Sbjct: 307 TGVTHVYNFD---LPQDPESYVHRIGRTGRAGKSGLAL 341


>gi|266620548|ref|ZP_06113483.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           hathewayi DSM 13479]
 gi|288867842|gb|EFD00141.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           hathewayi DSM 13479]
          Length = 823

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK---TLERIEIIRDLRLGK 632
           N +     R L    TK+ AE + E+   R +R   ++S       L+R E + +L+ G+
Sbjct: 437 NYSKYNCKRALAFCSTKKHAEYMAEFFQNRGVRAAAVYSGTDGEYNLDRKEALEELKDGR 496

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             ++  +++  EGLD+    +V  L        +S    +Q +GR  R    K  L
Sbjct: 497 LQIIFSVDMFNEGLDVKNIDMVLFLRP-----TQSPAVFLQQLGRGLRTAEGKSYL 547


>gi|261337278|ref|ZP_05965162.1| transcription-repair coupling factor [Bifidobacterium gallicum DSM
           20093]
 gi|270277644|gb|EFA23498.1| transcription-repair coupling factor [Bifidobacterium gallicum DSM
           20093]
          Length = 1205

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 83/181 (45%), Gaps = 18/181 (9%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFP--HNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           A ++P +++ P+   A ++    ++++    NAV   +  ++    E   PR DT   + 
Sbjct: 75  AERKPVVMVVPSAREANEMAEAIRSYYDGDSNAVA-VLDAWETLPHERLSPRADTVANR- 132

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSV-----SCIYGIGSVESYSQMIVQLKIGDSV 303
               +   R+ H      +     I+V  V       + G+G ++      +  +IG+ +
Sbjct: 133 ---MQVFARLCHPQPGDAMFGTIRILVMPVRSLIQPVVTGVGDIKP-----LVFRIGEQI 184

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
              + +++LV+  Y R ++ + RG F V G  +++FP   +    R+  FG++I+ I  F
Sbjct: 185 ALDDAVAALVRNAYTRVELVMDRGEFAVRGGILDVFPPTAKHPV-RIDFFGDEIDSIRAF 243

Query: 364 Y 364
           +
Sbjct: 244 H 244


>gi|148654135|ref|YP_001281228.1| ATP-dependent DNA helicase RecG [Psychrobacter sp. PRwf-1]
 gi|148573219|gb|ABQ95278.1| ATP-dependent DNA helicase RecG [Psychrobacter sp. PRwf-1]
          Length = 747

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 7/112 (6%)

Query: 588 TVLTKRMAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           + L  + AE     L ER +IR+  +H ++K+ E+ EI+   +  + D+LV   ++  G+
Sbjct: 550 STLNAQAAEATFADLSERLDIRIGMVHGKMKSKEKQEIMAAFKNAELDLLVATTVIEVGV 609

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKS 696
           D+P   L+ I +A++ G     + L Q  GR  R       V+LY   ++++
Sbjct: 610 DVPNASLMVIENAERLGL----SQLHQLRGRVGRGSTKSFCVLLYQTPLSET 657


>gi|86148076|ref|ZP_01066377.1| helicase-related protein [Vibrio sp. MED222]
 gi|85834136|gb|EAQ52293.1| helicase-related protein [Vibrio sp. MED222]
          Length = 579

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 25/161 (15%)

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L + GF  P+ M + P+   +++ LRP      A+ G ++ E    +++EQ  R T    
Sbjct: 189 LLDEGFLTPARMIDAPVLSYDFSQLRP------ASTGRYK-ESELDMVIEQSKRAT---- 237

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
                         + D+I   A+  L I++   T R A+++   L E    +  +  + 
Sbjct: 238 ------------PQIVDQIIELAKDKLGIMVFAATVRHAQEILSLLPEGQSSI--VIGDT 283

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
            TLER +II D +  K   LV +++L  G D P   L+AIL
Sbjct: 284 PTLERDQIINDFKERKIKFLVNVSVLTTGFDAPHVDLIAIL 324


>gi|71656970|ref|XP_817024.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70882190|gb|EAN95173.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 798

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TKR AE+L   L    I    +H + +  +R   +RD + G   +LV  ++   
Sbjct: 597 VLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRDFKDGITPILVATDVASR 656

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           GLD+P    V   D  KE  +   T  I   GRA 
Sbjct: 657 GLDVPNVAHVIQYDLPKE--MDDYTHRIGRTGRAG 689


>gi|315656036|ref|ZP_07908934.1| transcription-repair coupling factor [Mobiluncus curtisii ATCC
           51333]
 gi|315490100|gb|EFU79727.1| transcription-repair coupling factor [Mobiluncus curtisii ATCC
           51333]
          Length = 1165

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 87/193 (45%), Gaps = 26/193 (13%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           L+ G+ GS +  T            +V+AP+   A QL  E   +     VE F  + + 
Sbjct: 38  LIAGLPGSDEGLT------------VVLAPSTRAATQLARELGAY--TTGVELFPDW-ET 82

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
              E   PR DT   +  +++    R+ H   +  +      V ++++ +     +  Y 
Sbjct: 83  LPHERLSPRADTMARRIWALH----RVTHPHPQDAVHFLVMPVRAALAPVNA--HIADYP 136

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRV 350
              VQ  +GD+ ++  + + L++  Y+R D+   RG F V G  +++F P+    V  R+
Sbjct: 137 LFTVQ--VGDTYDRDTMAADLLRLGYERVDMVGARGQFAVRGGLLDVFSPTSAHPV--RI 192

Query: 351 SMFGNDIEEISEF 363
            +FG++++ I  F
Sbjct: 193 ELFGDEVDTIRAF 205


>gi|210623288|ref|ZP_03293705.1| hypothetical protein CLOHIR_01655 [Clostridium hiranonis DSM 13275]
 gi|210153689|gb|EEA84695.1| hypothetical protein CLOHIR_01655 [Clostridium hiranonis DSM 13275]
          Length = 1147

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 66/321 (20%), Positives = 137/321 (42%), Gaps = 44/321 (13%)

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
           + K+GD V+ +EL S LV   Y+R       G F V G  ++IF    E+   R+  F +
Sbjct: 141 KYKVGDIVDIEELSSKLVSLGYERVSKVEGFGQFSVRGGIVDIFSLEYEN-PIRIEFFDD 199

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F   + + I  +++  +  +  ++ P     T  +  K+  K+   ++E    
Sbjct: 200 EIDSIRTFDVFSQKSIDKLKSFILTPSREFIYPENVEETVSRMKKDRGKVCSDDVEAV-- 257

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                ++ ++  +D            IENY  Y       +   ++FEY+ +++++F+++
Sbjct: 258 ---IDKIARKEYFD-----------GIENYIDYFYP----DVEKSIFEYLDKNAIVFIND 299

Query: 476 -------SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
                        +    Y+ +  R   L   G  + + +D   L +    C+    IV+
Sbjct: 300 ISRMKERCENFAEEFKDSYKMNLERGTALKSQGNLVYNYID---LEY----CIGDRNIVI 352

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           +    S   +  +G  V++I+          E+ S   +++ + DE+      G +I+L 
Sbjct: 353 N----SLLPKAVKGFNVKEILNFDSR-----EVPSFNGKIDILADELQRLKYSGHKIILA 403

Query: 589 VLTKRMAEDLTEYLYERNIRV 609
           V +   A+ L E L+E ++ V
Sbjct: 404 VNSSERAKKLKEALFEYDVEV 424


>gi|290562842|ref|NP_001166829.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
 gi|95102744|gb|ABF51313.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
          Length = 512

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 18/123 (14%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY------MHSEVKTLERIEIIRD 627
           EI  + + G + ++ V TKR AE+++     RNIR RY      MH +    ER E++  
Sbjct: 321 EIGQSQEPGAKTIIFVETKRKAENIS-----RNIR-RYGWPAVCMHGDKTQQERDEVLYQ 374

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + G+  +LV  ++   GLD+   G+  +++ D   +  S    I  IGR  R+  SK  
Sbjct: 375 FKEGRASILVATDVAARGLDVD--GIKYVINFD---YPNSSEDYIHRIGRTGRS-KSKGT 428

Query: 688 LYA 690
            YA
Sbjct: 429 SYA 431


>gi|66391261|ref|YP_238583.1| ORF006 [Staphylococcus phage Twort]
 gi|62637191|gb|AAX92302.1| ORF006 [Staphylococcus phage Twort]
          Length = 1004

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 7/100 (7%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G+ I++  +T    E++++ L E  I   ++H EV +  R + + D+R GK  V++  +
Sbjct: 866 KGVLIIVNFITH--GENISKLLEELGIEHFFLHGEVDSELRQQKLNDMRSGKLKVMIATS 923

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           L+ EG+DI   G+ A++       LR    ++Q IGRA R
Sbjct: 924 LIDEGVDI--SGIHALILGAGGKSLR---QVLQRIGRALR 958


>gi|332814684|ref|XP_003309348.1| PREDICTED: interferon-induced helicase C domain-containing protein
           1 [Pan troglodytes]
          Length = 1024

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 12/116 (10%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ E+I   R GK ++L+   +  EGLDI EC +V      + G + ++ +++Q  GR A
Sbjct: 769 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 822

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEV 732
           R   S  +L A + +  I+    ET     +++ +   H   N+ P+    KI+E+
Sbjct: 823 RADESTYVLVAHSGSGVIE---RETVNDFREKMMYKAIHCVQNMKPEEYAHKILEL 875


>gi|326333885|ref|ZP_08200118.1| transcription-repair coupling factor [Nocardioidaceae bacterium
           Broad-1]
 gi|325948467|gb|EGD40574.1| transcription-repair coupling factor [Nocardioidaceae bacterium
           Broad-1]
          Length = 1198

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 20/199 (10%)

Query: 172 LLLGVTG--SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
           L L VTG  + + F +  ++   +R  + +      A  L S+  +  P ++V Y+ S+ 
Sbjct: 37  LALDVTGPEALRPFVVTGLVR-QERTVLAVTATSREAEDLVSDLTDLLPPDSVAYYPSW- 94

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GI 284
           +    E   PR+DT   + + +          A   L      +VV+ V  +      G+
Sbjct: 95  ETLPHERLSPRSDTVGRRLAVLRRLRHPDADGAHGPL-----KVVVAPVRSVLQPQVKGL 149

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
           G +E      V+L  G  V   +++  L    Y R D+   RG F V G  +++FP   E
Sbjct: 150 GDLEP-----VELVKGQEVSLDDVVVKLADAAYSRVDLVEKRGEFAVRGGIVDVFPP-TE 203

Query: 345 DVAWRVSMFGNDIEEISEF 363
           +   RV  +G++++ I  F
Sbjct: 204 EHPVRVEFWGDEVDSIRHF 222


>gi|301794675|emb|CBW37126.1| ATP-dependent DNA helicase [Streptococcus pneumoniae INV104]
          Length = 671

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|282875433|ref|ZP_06284305.1| transcription-repair coupling factor [Staphylococcus epidermidis
           SK135]
 gi|281295790|gb|EFA88312.1| transcription-repair coupling factor [Staphylococcus epidermidis
           SK135]
          Length = 1169

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 21/184 (11%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK+G  ++    L+ LV   Y+R+ +    G F + G  I+I+P  L     R+ +F  +
Sbjct: 141 LKVGQDIDVDAFLNKLVNMGYRRESVVSHIGKFSLRGGIIDIYP--LIGTPVRIELFDTE 198

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR- 415
           ++ I +F   T +   N+  ++I   S Y+     +      +K+  +    ++EK  R 
Sbjct: 199 VDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNELKKAYEYTRPKIEKSVRN 258

Query: 416 ----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                 E+ +L +   +D ++L    S                 E P TL +Y  +++++
Sbjct: 259 DLKETYESFKLFESTFFDHQLLRRLVSFMY--------------EKPSTLIDYFQKNAII 304

Query: 472 FVDE 475
            VDE
Sbjct: 305 VVDE 308


>gi|261253317|ref|ZP_05945890.1| transcription-repair coupling factor [Vibrio orientalis CIP 102891]
 gi|260936708|gb|EEX92697.1| transcription-repair coupling factor [Vibrio orientalis CIP 102891]
          Length = 1153

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 123/296 (41%), Gaps = 38/296 (12%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G+     ++++  A  +  ++  P+   A +L  E + F         VS +  ++   Y
Sbjct: 26  GASLAIAISELAAAHGKHTLLAVPDPQTALKLLQEIEQFTTQE-----VSLFPDWETLPY 80

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMIVQ 296
               D++   +  I+++I R+    T++       I +  V  +    S   Y  Q  + 
Sbjct: 81  ----DSFSPHQEIISDRISRLYQLPTQT-----GGITIVPVGTLLQRQSPRDYLMQHTLM 131

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           +K+GD    ++L   L K  Y+  D     G +   G  +++FP   +D  +R+  F ++
Sbjct: 132 VKVGDLFSLEKLRIQLEKSGYRHVDQVFGPGEYASRGSILDLFPMGSKD-PFRIDFFDDE 190

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           I+ I  F P   + I + + I++     +    PT  +A++  +   + R          
Sbjct: 191 IDTIRTFDPENQRSIEDTKEIRLLPAHEF----PTSESAIEDFRIRWRQRF--------- 237

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
            EA+R  + +     M  + G+  +   Y + L      E   TLF+YIPEDS L 
Sbjct: 238 -EARREPESVY----MQVSKGTWPAGIEYWQPLFF----EQTETLFDYIPEDSQLL 284


>gi|327438469|dbj|BAK14834.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 517

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 6/119 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L++ L  R      +H ++   +RI ++R  + GK D+L+  ++   GLDI  
Sbjct: 249 TKRRVDELSQALGLRGFLAEGIHGDLSQAKRISVLRQFKEGKIDILIATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI-DETTRRR 708
            G+  + + D     +   S +  IGR  R   S V +   T  +   L I +ETT++R
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKSGVAVTFVTPREMGYLRIVEETTKKR 362


>gi|182684639|ref|YP_001836386.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CGSP14]
 gi|303254307|ref|ZP_07340415.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS455]
 gi|303258630|ref|ZP_07344610.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP-BS293]
 gi|303261793|ref|ZP_07347739.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263657|ref|ZP_07349579.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS397]
 gi|303266833|ref|ZP_07352712.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS457]
 gi|303269890|ref|ZP_07355632.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS458]
 gi|182629973|gb|ACB90921.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae CGSP14]
 gi|301802397|emb|CBW35151.1| ATP-dependent DNA helicase [Streptococcus pneumoniae INV200]
 gi|302598658|gb|EFL65696.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS455]
 gi|302636876|gb|EFL67365.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP14-BS292]
 gi|302640131|gb|EFL70586.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP-BS293]
 gi|302640568|gb|EFL70973.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS458]
 gi|302643601|gb|EFL73869.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS457]
 gi|302646695|gb|EFL76920.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae BS397]
          Length = 671

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|154285130|ref|XP_001543360.1| eukaryotic initiation factor 4A-12 [Ajellomyces capsulatus NAm1]
 gi|160385733|sp|A6QSQ0|FAL1_AJECN RecName: Full=ATP-dependent RNA helicase FAL1
 gi|150407001|gb|EDN02542.1| eukaryotic initiation factor 4A-12 [Ajellomyces capsulatus NAm1]
          Length = 450

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 357


>gi|26343661|dbj|BAC35487.1| unnamed protein product [Mus musculus]
          Length = 651

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 15/115 (13%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM----HSEVKTL------ERIEIIRDLRLGKF 633
           R+++    +   E++ E L +    +R M    H+  K        E+++++R  R G +
Sbjct: 463 RVMIFSSFRDSVEEIAEMLLQHRPVIRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDGGY 522

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + LV   +  EGLDI E  L+   DA K     S   LIQ +GR  R    ++++
Sbjct: 523 NTLVSTCVGEEGLDIGEVDLIICFDAQK-----SPIRLIQRMGRTGRKRQGRIVV 572


>gi|23335259|ref|ZP_00120496.1| COG1197: Transcription-repair coupling factor (superfamily II
           helicase) [Bifidobacterium longum DJO10A]
 gi|189439640|ref|YP_001954721.1| transcription-repair coupling factor (superfamily II helicase)
           [Bifidobacterium longum DJO10A]
 gi|189428075|gb|ACD98223.1| Transcription-repair coupling factor (superfamily II helicase)
           [Bifidobacterium longum DJO10A]
          Length = 1194

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 38/221 (17%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P G +PA  A + +G+  +    ++L V  SG+    A+      R      PN I  AQ
Sbjct: 51  PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SATRSLL 267
           L  E     PH               E   PR DT   + +       R++H S T S+ 
Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDSMF 143

Query: 268 ERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                +V+   S I     G+G VE      +   +G+ +   E    L++  Y R D+ 
Sbjct: 144 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVDLV 198

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + RG F V G  +++FP        R+  FG++I+ I EF+
Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238


>gi|322412623|gb|EFY03531.1| ATP-dependent DNA helicase RecG [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 671

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 5/95 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           ++ + R+  MH ++K  E+  I++  +  + D+LV   ++  G+++P   ++ I+DAD+ 
Sbjct: 492 FKASARIALMHGKMKADEKEAIMQAFKAQEIDLLVSTTVIEVGVNVPNASIMVIMDADRF 551

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           G     + L Q  GR  R    S  IL A+  T+S
Sbjct: 552 GL----SQLHQLRGRVGRGYKQSYAILVANPKTES 582


>gi|312133038|ref|YP_004000377.1| mfd [Bifidobacterium longum subsp. longum BBMN68]
 gi|311774027|gb|ADQ03515.1| Mfd [Bifidobacterium longum subsp. longum BBMN68]
          Length = 1194

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 38/221 (17%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P G +PA  A + +G+  +    ++L V  SG+    A+      R      PN I  AQ
Sbjct: 51  PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SATRSLL 267
           L  E     PH               E   PR DT   + +       R++H S T S+ 
Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDSMF 143

Query: 268 ERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                +V+   S I     G+G VE      +   +G+ +   E    L++  Y R D+ 
Sbjct: 144 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVDLV 198

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + RG F V G  +++FP        R+  FG++I+ I EF+
Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238


>gi|89902343|ref|YP_524814.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
 gi|89347080|gb|ABD71283.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 421

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+ V TK  AE + + L +  I     H E+   +R +++ D +  +  V+V  ++  
Sbjct: 247 RVLVFVATKHAAEMVADKLRKARINAEPFHGELSQGKRTQVLADFKASRLKVVVATDVAA 306

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            GLDI +  +V   D       RS    I  IGR  R     V L
Sbjct: 307 RGLDIAQLPVVVNFD-----LPRSALDYIHRIGRTGRAGEKGVAL 346


>gi|42521033|ref|NP_966948.1| DEAD-box ATP dependent DNA helicase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410774|gb|AAS14882.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 408

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TKR A+ L   L++ +     +H +++  +R  +I   R G+  ++V  ++   
Sbjct: 243 IIIFVKTKRGADQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVASR 302

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           GLDIP    V   DA +     S+   I  IGR AR
Sbjct: 303 GLDIPHIQHVINYDAPQ-----SQADYIHRIGRTAR 333


>gi|322503130|emb|CBZ38214.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 917

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK+MAED+   L+   I    +H + +  +R   + D +     +LV  ++   
Sbjct: 717 VLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPILVATDVASR 776

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           GLDIP+   V   D  +E  +   T  I   GRA 
Sbjct: 777 GLDIPDVAHVVQFDLPQE--MDDYTHRIGRTGRAG 809


>gi|319788495|ref|YP_004147970.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
 gi|317467007|gb|ADV28739.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 801

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 16/135 (11%)

Query: 554 LVDPPVEIR-SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------R 605
           +V+P + +R SAR+Q   +      A + GL+ L+   ++ M E LT+YL +       +
Sbjct: 279 VVNPDLGLRASARSQSNRI---ARAALKAGLKTLVFAQSRTMVEVLTKYLKDVFDSDPRK 335

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
             RVR         ER E  + +R G+ D +V  + L  G+DI    LV +      G+ 
Sbjct: 336 PARVRAYRGGYLPTERREAEQAMRAGRIDCIVSTSALELGVDIGSLDLVVL-----NGYP 390

Query: 666 RSKTSLIQTIGRAAR 680
            S  +  Q  GRA R
Sbjct: 391 GSVAATWQRFGRAGR 405


>gi|256820721|ref|YP_003142000.1| transcription-repair coupling factor [Capnocytophaga ochracea DSM
           7271]
 gi|256582304|gb|ACU93439.1| transcription-repair coupling factor [Capnocytophaga ochracea DSM
           7271]
          Length = 1109

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 96/234 (41%), Gaps = 25/234 (10%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G+ G+  +  +A V    +RP +++ P+K  +A L          N +E  V     + P
Sbjct: 31  GLAGASLSLLIANVYTNTKRPLLILLPDKEESAYLL---------NDLETLVGEQVLFFP 81

Query: 235 EAYVPRTDTYIEKESSIN-----EQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVE 288
           ++Y  R    IE   + N     E ++R+ +S           IVVS    ++  + + +
Sbjct: 82  DSY--RRPYQIEDTDNANVLLRAEVLNRLSNSG-------QPLIVVSYPEALFEKVITRK 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
              Q  +++  GD +  + L   L    + R D     G F V G  +++F S   +  +
Sbjct: 133 QLEQNTLKISKGDQLTIELLNEVLFSYNFNRTDFVTEPGEFSVRGGIVDVF-SFSNNEPY 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
           R+  FGN++E I  F   T      +  I I  N           + ++YI E+
Sbjct: 192 RIEFFGNEVESIRTFDVETQLSTTQLSKITIIPNVENKEGNEVRQSFLEYISEQ 245


>gi|260950467|ref|XP_002619530.1| hypothetical protein CLUG_00689 [Clavispora lusitaniae ATCC 42720]
 gi|238847102|gb|EEQ36566.1| hypothetical protein CLUG_00689 [Clavispora lusitaniae ATCC 42720]
          Length = 470

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 3/97 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TKR A+ L + + +    V  +H  +   ER  +I D R G+  VL+  N+L  G
Sbjct: 322 IIFVGTKRTADMLYQKMKQEGHTVSVLHGSLDNAERDRLIDDFREGRSKVLITTNVLARG 381

Query: 646 LDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
           +DI    +V   D   DK+G     T L   IGR  R
Sbjct: 382 IDIASVSMVVNYDLPVDKDGKPDPSTYL-HRIGRTGR 417


>gi|147770303|emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera]
          Length = 666

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G + ++   TKR A+ L  Y   RN R   +H ++   +R   +   R G F+VLV  +
Sbjct: 359 KGGKCIVFTQTKRDADRLA-YAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATD 417

Query: 641 LLREGLDIPECGLV 654
           +   GLDIP   L+
Sbjct: 418 VAARGLDIPNVDLI 431


>gi|47226775|emb|CAG06617.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 558

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 7/108 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L + N+    +H + +  ER   + + R GK  VLV  ++  
Sbjct: 423 RTMVFVETKRQADFIAAHLCQENVPTTSIHGDREQREREMALANFRSGKCPVLVATSVAA 482

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILY 689
            GLDIP+   V   D        +    +  IGR  R  NV   V  Y
Sbjct: 483 RGLDIPDVQHVINFD-----LPNNIDEYVHRIGRTGRCGNVGRAVSFY 525


>gi|322818915|gb|EFZ26192.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 794

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TKR AE+L   L    I    +H + +  +R   +RD + G   +LV  ++   
Sbjct: 591 VLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRDFKDGITPILVATDVASR 650

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           GLD+P    V   D  KE  +   T  I   GRA 
Sbjct: 651 GLDVPNVAHVIQYDLPKE--MDDYTHRIGRTGRAG 683


>gi|322707397|gb|EFY98975.1| DEAD/DEAH box helicase [Metarhizium anisopliae ARSEF 23]
          Length = 651

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 9/87 (10%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +A    EY Y+     R++  +    ER EI+ D + G F VLV   +  EG DIP    
Sbjct: 299 LARKFREYGYD----ARFVTGDTPKQERSEILHDFKKGCFPVLVNCGVFTEGTDIPNIDC 354

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR 680
           + +         RS+  L+Q IGR  R
Sbjct: 355 IVLGRP-----TRSRNLLVQMIGRGMR 376


>gi|302911254|ref|XP_003050452.1| hypothetical protein NECHADRAFT_71876 [Nectria haematococca mpVI
           77-13-4]
 gi|256731389|gb|EEU44739.1| hypothetical protein NECHADRAFT_71876 [Nectria haematococca mpVI
           77-13-4]
          Length = 688

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L    G   L+ V TKRMA+ L+++L  +N     +H +    ER   +   R G+  +L
Sbjct: 451 LHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEFFRNGRCPIL 510

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 511 VATAVAARGLDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 555


>gi|302892891|ref|XP_003045327.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256726252|gb|EEU39614.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 596

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 41/75 (54%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q+  RIL+  L K+ A  +  +L  + +RV  +H +++  +R + +   + G   VLV  
Sbjct: 430 QKNDRILVFCLYKKEATRVENFLSRKGVRVCGIHGDLRQEQRTKSLEAFKTGVTPVLVAT 489

Query: 640 NLLREGLDIPECGLV 654
           ++   GLDIPE  LV
Sbjct: 490 DVAARGLDIPEVKLV 504


>gi|209521901|ref|ZP_03270572.1| DEAD/H associated domain protein [Burkholderia sp. H160]
 gi|209497659|gb|EDZ97843.1| DEAD/H associated domain protein [Burkholderia sp. H160]
          Length = 1313

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 10/164 (6%)

Query: 526 IVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRS--ARTQVEDVYDEINLAAQQG 582
           +V  A+P S    +C  I V  +  R   L  PPV + +  A    E VYD +     Q 
Sbjct: 254 LVGGASPDSDVPAECAVIDVGHVRARDLALEIPPVPLEAVMANEVWERVYDRLAELVAQH 313

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
              L+ V T+RMAE    +L ER  +  V   H  +    R +  + L+ G+  VL+   
Sbjct: 314 RTTLIFVNTRRMAERAARHLTERLGKDAVAAHHGSLAKEYRFDAEQRLKRGELRVLIATA 373

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            L  G+DI +  LV      + G  R+    +Q +GR+  +V  
Sbjct: 374 SLELGIDIGDVDLVC-----QMGSPRAIAPFLQRVGRSGHHVGG 412


>gi|329723937|gb|EGG60462.1| transcription-repair coupling factor [Staphylococcus epidermidis
           VCU144]
          Length = 1166

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 21/184 (11%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK+G  ++    L+ LV   Y+R+ +    G F + G  I+I+P  L     R+ +F  +
Sbjct: 138 LKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGTPVRIELFDTE 195

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR- 415
           ++ I +F   T +   N+  ++I   S Y+     +      +K+  +    ++EK  R 
Sbjct: 196 VDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNELKKAYEYTRPKIEKSVRN 255

Query: 416 ----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                 E+ +L +   +D ++L    S                 E P TL +Y  +++++
Sbjct: 256 DLKETYESFKLFESTFFDHQLLRRLVSFMY--------------EKPSTLIDYFQKNAII 301

Query: 472 FVDE 475
            VDE
Sbjct: 302 VVDE 305


>gi|317125686|ref|YP_004099798.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
 gi|315589774|gb|ADU49071.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
           43043]
          Length = 562

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 15/135 (11%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL I+ +  TKR A  + + L ER      +H ++    R + +R  R GK DVLV
Sbjct: 264 AKDRGLTIIFS-RTKRTAAKVADELGERGFAAAAIHGDLGQGAREQALRAFRNGKVDVLV 322

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD----- 691
             ++   G+D+     V      ++     + + +  IGR AR  N+ V + + D     
Sbjct: 323 ATDVAARGIDVDNVTHVINFQCPED-----EKTYLHRIGRTARAGNTGVAVTFVDWDDLH 377

Query: 692 ---TITKSIQLAIDE 703
               I K++ L I E
Sbjct: 378 RWALINKTLDLGIPE 392


>gi|229083524|ref|ZP_04215862.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
 gi|228699778|gb|EEL52425.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
          Length = 527

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRR 708
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRK 362


>gi|227546191|ref|ZP_03976240.1| transcription-repair coupling factor helicase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|227213172|gb|EEI81044.1| transcription-repair coupling factor helicase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
          Length = 1194

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 38/221 (17%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P G +PA  A + +G+  +    ++L V  SG+    A+      R      PN I  AQ
Sbjct: 51  PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SATRSLL 267
           L  E     PH               E   PR DT   + +       R++H S T S+ 
Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDSMF 143

Query: 268 ERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                +V+   S I     G+G VE      +   +G+ +   E    L++  Y R D+ 
Sbjct: 144 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYARVDLV 198

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + RG F V G  +++FP        R+  FG++I+ I EF+
Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238


>gi|146319228|ref|YP_001198940.1| superfamily II DNA/RNA helicase [Streptococcus suis 05ZYH33]
 gi|146321430|ref|YP_001201141.1| superfamily II DNA/RNA helicase [Streptococcus suis 98HAH33]
 gi|253752268|ref|YP_003025409.1| DEAD box helicase family protein [Streptococcus suis SC84]
 gi|253754094|ref|YP_003027235.1| DEAD box helicase family protein [Streptococcus suis P1/7]
 gi|253756028|ref|YP_003029168.1| DEAD box helicase family protein [Streptococcus suis BM407]
 gi|145690034|gb|ABP90540.1| Superfamily II DNA and RNA helicase [Streptococcus suis 05ZYH33]
 gi|145692236|gb|ABP92741.1| Superfamily II DNA and RNA helicase [Streptococcus suis 98HAH33]
 gi|251816557|emb|CAZ52193.1| DEAD box helicase family protein [Streptococcus suis SC84]
 gi|251818492|emb|CAZ56321.1| DEAD box helicase family protein [Streptococcus suis BM407]
 gi|251820340|emb|CAR46890.1| DEAD box helicase family protein [Streptococcus suis P1/7]
 gi|319758658|gb|ADV70600.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
          Length = 514

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ +IRD +  + DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R   S + I +           I++ T++R 
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLAIIEDLTKKRM 362

Query: 710 KQLE 713
           K L+
Sbjct: 363 KGLK 366


>gi|82778002|ref|YP_404351.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae Sd197]
 gi|309784609|ref|ZP_07679244.1| ATP-dependent RNA helicase srmB [Shigella dysenteriae 1617]
 gi|81242150|gb|ABB62860.1| ATP-dependent RNA helicase [Shigella dysenteriae Sd197]
 gi|308927506|gb|EFP72978.1| ATP-dependent RNA helicase srmB [Shigella dysenteriae 1617]
          Length = 444

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L E  I  RY+  E+   +R E I+ L  G+ +VL
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNRYLEGEMVQGKRNEAIKRLTEGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR AR
Sbjct: 303 VATDVAARGIDIPDVSHVFNFD-----MPRSGDTYLHRIGRTAR 341


>gi|23465592|ref|NP_696195.1| transcription-repair coupling factor [Bifidobacterium longum
           NCC2705]
 gi|23326260|gb|AAN24831.1| transcription-repair coupling factor [Bifidobacterium longum
           NCC2705]
          Length = 1194

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 38/221 (17%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P G +PA  A + +G+  +    ++L V  SG+    A+      R      PN I  AQ
Sbjct: 51  PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SATRSLL 267
           L  E     PH               E   PR DT   + +       R++H S T S+ 
Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDSMF 143

Query: 268 ERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                +V+   S I     G+G VE      +   +G+ +   E    L++  Y R D+ 
Sbjct: 144 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVDLV 198

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + RG F V G  +++FP        R+  FG++I+ I EF+
Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238


>gi|313203296|ref|YP_004041953.1| transcriptioN-repair coupling factor [Paludibacter propionicigenes
           WB4]
 gi|312442612|gb|ADQ78968.1| transcription-repair coupling factor [Paludibacter propionicigenes
           WB4]
          Length = 1113

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 16/221 (7%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           +D+     Q   + +L+    S E+   + G++GS      A + +A     I++  +  
Sbjct: 4   SDFQQLYAQHPQVKELVSWASSSEQNIKISGLSGSSCALVAASLFKAHSNTQILVMNDAD 63

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
            AA LY++ K       V +F        P +Y         K S ++   + +R     
Sbjct: 64  DAAYLYNDLKQILSTEEVFFF--------PSSYKRAI-----KLSQLDAANEILRTEVLN 110

Query: 265 SLLERNDCIVVSSV--SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
            L   +  IVV +   S +  + S  S    ++++  G+ +    ++  L++  ++R D 
Sbjct: 111 RLANTSSPIVVVTYPESLMQKVVSAGSMQTRMLRMHTGEGLSLNFVVEMLIEYGFERVDF 170

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
               G F V G  ++IF S+  ++ +R   FG++IE I  F
Sbjct: 171 VYEPGQFSVRGSIVDIF-SYANELPYRCDFFGDEIETIRVF 210


>gi|146101459|ref|XP_001469120.1| ATP-dependent RNA helicase [Leishmania infantum]
 gi|134073489|emb|CAM72220.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
          Length = 924

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK+MAED+   L+   I    +H + +  +R   + D +     +LV  ++   
Sbjct: 724 VLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPILVATDVASR 783

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           GLDIP+   V   D  +E  +   T  I   GRA 
Sbjct: 784 GLDIPDVAHVVQFDLPQE--MDDYTHRIGRTGRAG 816


>gi|332284439|ref|YP_004416350.1| ATP-dependent DNA helicase RecG [Pusillimonas sp. T7-7]
 gi|330428392|gb|AEC19726.1| ATP-dependent DNA helicase RecG [Pusillimonas sp. T7-7]
          Length = 699

 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++RV  +H ++ T E+ E++++ R G+ D+LV   ++  G+D+P   L+ I  A++ G  
Sbjct: 523 DMRVGLIHGKLATSEKQEVMQEFRAGRIDLLVATTVIEVGVDVPNASLMIIEHAERFGL- 581

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R 
Sbjct: 582 ---AQLHQLRGRVGRG 594


>gi|291570834|dbj|BAI93106.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 493

 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 22/162 (13%)

Query: 574 EINLAAQQGLRILLTVLTKRMAE--------DLTEYLYERNIRVRYMHSEVKTLERIEII 625
           EI L     LRIL  +L++   E        + T Y   ++  +  +  +    ER +I+
Sbjct: 315 EIALCTDGKLRILGDILSQNHPERTIIFTVDNTTVYRISQDFLIPAITHQTPVKERHQIL 374

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NV 682
              R G +  LV  ++L EG+D+P+  +  IL         S+   IQ +GR  R     
Sbjct: 375 DKFRQGDYRTLVASHVLNEGVDVPDAKIAIILSGTG-----SEREYIQRLGRVLRKGSQT 429

Query: 683 NSKVILYADTITKSIQLAIDETT--RRREKQLEHNKKHNINP 722
             + +LY + IT++     +E T  RRR  Q    +K  I+P
Sbjct: 430 GKRAVLY-EVITENTS---EEQTSQRRRGHQKPQREKPKISP 467


>gi|160380611|sp|A6ZRX0|DBP2_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP2; AltName: Full=DEAD
           box protein 2; AltName: Full=p68-like protein
 gi|151944424|gb|EDN62702.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|190409099|gb|EDV12364.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|259149249|emb|CAY82491.1| Dbp2p [Saccharomyces cerevisiae EC1118]
          Length = 546

 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+   TKRM +D+T+YL E       +H +    ER  ++++ R G+  ++V  ++  
Sbjct: 362 KTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAA 421

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            G+D+   G+  +++ D  G +      I   GRA 
Sbjct: 422 RGIDVK--GINYVINYDMPGNIEDYVHRIGRTGRAG 455


>gi|329733010|gb|EGG69349.1| transcription-repair coupling factor [Staphylococcus epidermidis
           VCU028]
          Length = 1166

 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 21/184 (11%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK+G  ++    L+ LV   Y+R+ +    G F + G  I+I+P  L     R+ +F  +
Sbjct: 138 LKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGTPVRIELFDTE 195

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR- 415
           ++ I +F   T +   N+  ++I   S Y+     +      +K+  +    ++EK  R 
Sbjct: 196 VDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNELKKAYEYTRPKIEKSVRN 255

Query: 416 ----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                 E+ +L +   +D ++L    S                 E P TL +Y  +++++
Sbjct: 256 DLKETYESFKLFESTFFDHQLLRRLVSFMY--------------EKPSTLIDYFQKNAII 301

Query: 472 FVDE 475
            VDE
Sbjct: 302 VVDE 305


>gi|316979290|gb|EFV62098.1| ATP-dependent RNA helicase Dbp2 [Trichinella spiralis]
          Length = 540

 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 16/163 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V TKR A++LT +L ++   V  +H +    ER  ++ + R GK  +++  ++  
Sbjct: 346 KVLIFVETKRKADELTRWLRQKGWPVLSIHGDKAQGERDWVLNEFRTGKSPIVIATDVAA 405

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLD+ +   V   D     + +     +  IGR  R  N     Y      + + A D 
Sbjct: 406 RGLDVDDIKFVVNYD-----YPQCSEDYVHRIGRTGR-CNRTGTAYTFFNANNARYAKDL 459

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
                E       K ++NP+  +  +ME+I    + +A TT I
Sbjct: 460 IDVLIE------AKQHVNPKLYELGVMEII----VGEAVTTTI 492


>gi|298492665|ref|YP_003722842.1| transcription-repair coupling factor ['Nostoc azollae' 0708]
 gi|298234583|gb|ADI65719.1| transcription-repair coupling factor ['Nostoc azollae' 0708]
          Length = 1166

 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 54/271 (19%), Positives = 114/271 (42%), Gaps = 31/271 (11%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A ++Y++ +         Y  +    Y+P  + P T+    +   + + ++      +  
Sbjct: 64  AGRVYAQMEAMGWKTVHFYPAAEASPYEP--FDPETELSWGQMQVLADLVNGQWSVVSSQ 121

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           L  RN  I+ +  +    +  +E +    + LK G   +  E    +    Y+R  +   
Sbjct: 122 LPNRNTAIIATVGALQPHLPPLEVFRSFCLSLKKGLEYDLDEFSEKITSLGYERVPLVET 181

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK-IRNVETIKIYANSH 384
            G +   GD +++FP   E +  R+  FG++I++I EF P T +  +  VE I       
Sbjct: 182 EGQWSRRGDIVDVFPVSSE-LPVRLEWFGDEIKQIREFDPATQRSALDKVEQI------- 233

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
           ++TP       +  +K+  + R++  +              +  D++ LE  G    +E 
Sbjct: 234 FLTPTSFSGIVLAALKQSSEFRVLSAD--------------LNSDVDDLENLG----LEG 275

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
             R+L G    + P +L +Y+  ++L+ +DE
Sbjct: 276 SRRFL-GLAFAK-PASLLDYLSANTLIAIDE 304


>gi|197098648|ref|NP_001124599.1| probable ATP-dependent RNA helicase DHX58 [Pongo abelii]
 gi|55725102|emb|CAH89418.1| hypothetical protein [Pongo abelii]
          Length = 678

 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+IR  R G  ++LV  ++  EGLDIP C +V      + G L ++ S++Q  GRA
Sbjct: 422 EVIRKFRDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472


>gi|330040429|ref|XP_003239908.1| DEAD box protein [Cryptomonas paramecium]
 gi|327206834|gb|AEA39010.1| DEAD box protein [Cryptomonas paramecium]
          Length = 396

 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+  AE +   L   N +V Y H ++   +R +I+ D +L K  +LV  +L   G
Sbjct: 245 IIFVDTQICAEKIAVLLKVLNFKVAYFHGKLSQDKRAKILHDFKLKKIKILVSTDLASRG 304

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +DIP+  L  I++ D   + R     I  IGR AR
Sbjct: 305 IDIPDIEL--IINYDIPLYTR---DYIHRIGRTAR 334


>gi|320582272|gb|EFW96489.1| RNA helicase [Pichia angusta DL-1]
          Length = 484

 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK  A  L   + +    V  +H +++  ER  +I D R G+  VL+  N+L  G
Sbjct: 337 IIFVQTKDTASKLYARMKQEGHAVSILHGDLQPAERDRLIDDFREGRSKVLITTNVLARG 396

Query: 646 LDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
           +DIP   +V   D   DK G     T L   IGR  R
Sbjct: 397 IDIPSVSMVVNYDIPLDKSGKPDPSTYL-HRIGRTGR 432


>gi|303315249|ref|XP_003067632.1| Type III restriction enzyme, res subunit family protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240107302|gb|EER25487.1| Type III restriction enzyme, res subunit family protein
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 1448

 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 13/97 (13%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DLR GK D+++   +L EG+D+P C LV   D  K+  LR   S IQ  GR AR   S
Sbjct: 472 IDDLRTGKKDLIIATAVLEEGIDVPICDLVICFDLPKD--LR---SFIQRRGR-ARKKGS 525

Query: 685 K--VILYADTITKSIQLAIDETTRRR-----EKQLEH 714
           K  + L+++    S +L + E T ++     ++ LEH
Sbjct: 526 KFALFLHSEDRATSSELHLMEKTMKQLYLENKRTLEH 562


>gi|12621066|gb|AAG54076.1| RNA helicase-DEAD box protein RH116 [Homo sapiens]
          Length = 1025

 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 12/116 (10%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ E+I   R GK ++L+   +  EGLDI EC +V      + G + ++ +++Q  GR A
Sbjct: 770 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 823

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEV 732
           R   S  +L A + +  I+    ET     +++ +   H   N+ P+    KI+E+
Sbjct: 824 RADESTYVLVAHSGSGVIE---RETVNDFREKMMYKAIHCVQNMKPEEYAHKILEL 876


>gi|57866056|ref|YP_187737.1| transcription-repair coupling factor [Staphylococcus epidermidis
           RP62A]
 gi|81819455|sp|Q5HRQ2|MFD_STAEQ RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|57636714|gb|AAW53502.1| transcription-repair coupling factor [Staphylococcus epidermidis
           RP62A]
          Length = 1169

 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 21/184 (11%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK+G  ++    L+ LV   Y+R+ +    G F + G  I+I+P  L     R+ +F  +
Sbjct: 141 LKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGTPVRIELFDTE 198

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR- 415
           ++ I +F   T +   N+  ++I   S Y+     +      +K+  +    ++EK  R 
Sbjct: 199 VDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNELKKAYEYTRPKIEKSVRN 258

Query: 416 ----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                 E+ +L +   +D ++L    S                 E P TL +Y  +++++
Sbjct: 259 DLKETYESFKLFESTFFDHQLLRRLVSFMY--------------EKPSTLIDYFQKNAII 304

Query: 472 FVDE 475
            VDE
Sbjct: 305 VVDE 308


>gi|6324217|ref|NP_014287.1| Dbp2p [Saccharomyces cerevisiae S288c]
 gi|118284|sp|P24783|DBP2_YEAST RecName: Full=ATP-dependent RNA helicase DBP2; AltName: Full=DEAD
           box protein 2; AltName: Full=p68-like protein
 gi|5272|emb|CAA36874.1| p68 protein [Saccharomyces cerevisiae]
 gi|1302034|emb|CAA95991.1| DBP2 [Saccharomyces cerevisiae]
 gi|285814541|tpg|DAA10435.1| TPA: Dbp2p [Saccharomyces cerevisiae S288c]
          Length = 546

 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+   TKRM +D+T+YL E       +H +    ER  ++++ R G+  ++V  ++  
Sbjct: 362 KTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAA 421

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            G+D+   G+  +++ D  G +      I   GRA 
Sbjct: 422 RGIDVK--GINYVINYDMPGNIEDYVHRIGRTGRAG 455


>gi|322690788|ref|YP_004220358.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320455644|dbj|BAJ66266.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 1194

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 38/221 (17%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P G +PA  A + +G+  +    ++L V  SG+    A+      R      PN I  AQ
Sbjct: 51  PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SATRSLL 267
           L  E     PH               E   PR DT   + +       R++H S T S+ 
Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDSMF 143

Query: 268 ERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                +V+   S I     G+G VE      +   +G+ +   E    L++  Y R D+ 
Sbjct: 144 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVDLV 198

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + RG F V G  +++FP        R+  FG++I+ I EF+
Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238


>gi|320035561|gb|EFW17502.1| RNA helicase/RNAse III [Coccidioides posadasii str. Silveira]
          Length = 1448

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 13/97 (13%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DLR GK D+++   +L EG+D+P C LV   D  K+  LR   S IQ  GR AR   S
Sbjct: 472 IDDLRTGKKDLIIATAVLEEGIDVPICDLVICFDLPKD--LR---SFIQRRGR-ARKKGS 525

Query: 685 K--VILYADTITKSIQLAIDETTRRR-----EKQLEH 714
           K  + L+++    S +L + E T ++     ++ LEH
Sbjct: 526 KFALFLHSEDRATSSELHLMEKTMKQLYLENKRTLEH 562


>gi|242279272|ref|YP_002991401.1| primosomal protein N' [Desulfovibrio salexigens DSM 2638]
 gi|242122166|gb|ACS79862.1| primosomal protein N' [Desulfovibrio salexigens DSM 2638]
          Length = 780

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 7/93 (7%)

Query: 146 DYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTF---TMAKVIEAMQRPAIVMAP 201
           D+ PS  Q  AI +LL  +   +  V+LL G+TGSGKT    T A+      +  IV+ P
Sbjct: 241 DFTPSEQQQGAIDELLAALDEPKSTVKLLHGITGSGKTLVYMTAARKCLEQGKSVIVLVP 300

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
              LA  L++     FP +A +Y   Y+ Y  P
Sbjct: 301 EIALAYALWNGICPLFP-DARKYL--YHGYQTP 330


>gi|328852836|gb|EGG01979.1| hypothetical protein MELLADRAFT_78893 [Melampsora larici-populina
           98AG31]
          Length = 537

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V TKR+A+DLT+YL +       +H + +  ER  ++ + + G+  +++  ++  
Sbjct: 355 KVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQTERDWVLGEFKSGRSPIMIATDVAS 414

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
            GLD+ +   V  ++ D    +      I   GRA R   +   + AD
Sbjct: 415 RGLDVKDVAYV--INYDMPNGIEDYIHRIGRTGRAGRTGTAYSYISAD 460


>gi|325140492|gb|EGC63013.1| transcription-repair coupling factor [Neisseria meningitidis CU385]
          Length = 1305

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 116/287 (40%), Gaps = 35/287 (12%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L S L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V  I++     +    PT + A K  +   +  +     +  + +A             
Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFREEVDGNPNDAAVYKAV------------ 243

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF-VDESHV 478
             + G   +   Y   L   N  E   TLF+YI ED+L   +D+ H 
Sbjct: 244 --SNGHFGAGVEYYLPLFFENELE---TLFDYIGEDALFVSLDDVHA 285



 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 996  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1052

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 1053 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1088


>gi|330793454|ref|XP_003284799.1| hypothetical protein DICPUDRAFT_28243 [Dictyostelium purpureum]
 gi|325085293|gb|EGC38703.1| hypothetical protein DICPUDRAFT_28243 [Dictyostelium purpureum]
          Length = 558

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 5/102 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K+  +D+ EYL  + +    +H +    ER   I+  R GK DVLV  ++  +
Sbjct: 363 VLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQEEREGAIKAFREGKKDVLVATDVASK 422

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           GLD P+   V   D  +E       + I  IGR  R  N  V
Sbjct: 423 GLDFPDIQHVINFDMPRE-----IENYIHRIGRTGRRGNKGV 459


>gi|322688798|ref|YP_004208532.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460134|dbj|BAJ70754.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 1194

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 38/221 (17%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P G +PA  A + +G+  +    ++L V  SG+    A+      R      PN I  AQ
Sbjct: 51  PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SATRSLL 267
           L  E     PH               E   PR DT   + +       R++H S T S+ 
Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDSMF 143

Query: 268 ERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                +V+   S I     G+G VE      +   +G+ +   E    L++  Y R D+ 
Sbjct: 144 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVDLV 198

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + RG F V G  +++FP        R+  FG++I+ I EF+
Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238


>gi|291517134|emb|CBK70750.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           longum F8]
          Length = 1194

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 38/221 (17%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P G +PA  A + +G+  +    ++L V  SG+    A+      R      PN I  AQ
Sbjct: 51  PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SATRSLL 267
           L  E     PH               E   PR DT   + +       R++H S T S+ 
Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDSMF 143

Query: 268 ERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                +V+   S I     G+G VE      +   +G+ +   E    L++  Y R D+ 
Sbjct: 144 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVDLV 198

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + RG F V G  +++FP        R+  FG++I+ I EF+
Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238


>gi|269137394|ref|YP_003294094.1| putative helicase [Edwardsiella tarda EIB202]
 gi|267983054|gb|ACY82883.1| putative helicase [Edwardsiella tarda EIB202]
          Length = 1078

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 12/91 (13%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N R+  +++ +K   R  +I D++ G +D++V +++L+EG D P+  + A+      G  
Sbjct: 383 NERIAIVYTGIKN--RRNLISDIKNGAYDIIVCVDMLKEGFDYPDFKIAAV-----HGIH 435

Query: 666 RSKTSLIQTIGRAARNVN-----SKVILYAD 691
           +S   L+Q IGR  R        S V+ YAD
Sbjct: 436 KSLAVLLQFIGRFTRTQEGLGDASFVVNYAD 466


>gi|220906008|ref|YP_002481319.1| primosome assembly protein PriA [Cyanothece sp. PCC 7425]
 gi|219862619|gb|ACL42958.1| primosomal protein N' [Cyanothece sp. PCC 7425]
          Length = 836

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 12/131 (9%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFL---------RSKTSLIQTIGRAAR- 680
           G+ D+++G  +L +GLD+P+   V +L AD  G L         R+  +L Q  GRA R 
Sbjct: 633 GEADLMIGTQMLTKGLDLPQVSFVGVLSAD--GLLNLPDFRAGERTFQTLTQVAGRAGRG 690

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +V+L   T    +  A+         Q E N++ +++     + I+  +  +  E 
Sbjct: 691 NEPGQVLLQTYTPHHPVIQAVQRYQFEAFMQEELNQRSSLHYPPQGQLILLRLSGLQEET 750

Query: 741 AATTNISIDAQ 751
            ATT I++  Q
Sbjct: 751 VATTAIALADQ 761


>gi|194745552|ref|XP_001955251.1| GF16329 [Drosophila ananassae]
 gi|190628288|gb|EDV43812.1| GF16329 [Drosophila ananassae]
          Length = 784

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+L++ N  V  +H +    ER E +R  R G   +LV   +   G
Sbjct: 553 LIFVETKKGADSLEEFLFQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 612

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 613 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 656


>gi|89147697|gb|ABD62707.1| vasa protein [Acanthopagrus schlegelii]
          Length = 260

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  YL +  +    +H + +  ER + + D R GK  V+V  ++  
Sbjct: 166 RTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQREREQALADFRSGKCPVMVATSVAA 225

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDIP+   V   D  KE         +  IGR  R  N
Sbjct: 226 RGLDIPDVQHVVNFDLPKE-----IDEYVHRIGRTGRCGN 260


>gi|27469198|ref|NP_765835.1| transcription-repair coupling factor [Staphylococcus epidermidis
           ATCC 12228]
 gi|81842450|sp|Q8CMT1|MFD_STAES RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|27316747|gb|AAO05922.1|AE016751_217 transcription-repair coupling factor [Staphylococcus epidermidis
           ATCC 12228]
          Length = 1169

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 21/184 (11%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK+G  ++    L+ LV   Y+R+ +    G F + G  I+I+P  L     R+ +F  +
Sbjct: 141 LKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGTPVRIELFDTE 198

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR- 415
           ++ I +F   T +   N+  ++I   S Y+     +      +K+  +    ++EK  R 
Sbjct: 199 VDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNELKKAYEYTRPKIEKSVRN 258

Query: 416 ----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                 E+ +L +   +D ++L    S                 E P TL +Y  +++++
Sbjct: 259 DLKETYESFKLFESTFFDHQLLRRLVSFMY--------------EKPSTLIDYFQKNAII 304

Query: 472 FVDE 475
            VDE
Sbjct: 305 VVDE 308


>gi|39104462|dbj|BAD04052.1| vasa homologue [Leucopsarion petersii]
          Length = 645

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR+A+ +  +L +  +    +H   +  ER + + D R GK  VLV  ++  
Sbjct: 464 RTMVFVETKRLADFIAAFLCQEKVPTTSIHGGREQREREQALGDFRSGKCPVLVATSVAA 523

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSIQLA 700
            GLDIP+   V   D        +    +  IGR  R  N  + + + D    S QLA
Sbjct: 524 RGLDIPDVQNVVNFD-----LPNNIDEYVHRIGRTGRCGNLGRAVSFFDPDNDS-QLA 575


>gi|325134475|gb|EGC57120.1| transcription-repair coupling factor [Neisseria meningitidis
           M13399]
          Length = 1305

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 116/287 (40%), Gaps = 35/287 (12%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L S L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V  I++     +    PT + A K  +   +  +     +  + +A             
Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFREEVDGNPNDAAVYKAV------------ 243

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF-VDESHV 478
             + G   +   Y   L   N  E   TLF+YI ED+L   +D+ H 
Sbjct: 244 --SNGHFGAGVEYYLPLFFENELE---TLFDYIGEDALFVSLDDVHA 285



 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 996  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1052

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 1053 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1088


>gi|166714765|gb|ABY88096.1| UvrB [Stenotrophomonas sp. LMG 6608]
          Length = 60

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 33/52 (63%)

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
           I++FP+  +    R+ +   ++E+I+ F PLTG+ +RN++   +Y  +HY +
Sbjct: 2   IDVFPAESDSEPLRIELLEGEVEKITLFEPLTGETLRNMQRFTVYPKTHYAS 53


>gi|330790576|ref|XP_003283372.1| hypothetical protein DICPUDRAFT_6001 [Dictyostelium purpureum]
 gi|325086637|gb|EGC40023.1| hypothetical protein DICPUDRAFT_6001 [Dictyostelium purpureum]
          Length = 462

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           Q+GL   IL+   +K  A DL + L    I V  +HSE    +R  I++  R GK  VL+
Sbjct: 288 QKGLEPPILIFTQSKERAHDLFQELVFDGINVDVIHSERTQFQRDTIVKKFRTGKIWVLI 347

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+  G+D      V   D     F ++  S +  IGR  R
Sbjct: 348 CTELMARGMDFKGVNYVINFD-----FPQTLASYVHRIGRTGR 385


>gi|319949680|ref|ZP_08023714.1| transcription-repair coupling factor [Dietzia cinnamea P4]
 gi|319436671|gb|EFV91757.1| transcription-repair coupling factor [Dietzia cinnamea P4]
          Length = 1222

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
           E+ S   + I R     +  +  R   I+V++   +    S  +  +  V+L  GD V+ 
Sbjct: 99  ERLSPAADTIGRRLEVLSAVMAGRAPRIIVAAARSVVQPISPAAARREPVRLTRGDEVDP 158

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            +L++ L +  Y R+D+   RG   V G  +++FP+   D   R+   G++I EI EF
Sbjct: 159 TDLMARLAEFAYTREDMVARRGDIAVRGGIVDVFPT-TADHPLRIEFDGDEIAEIREF 215


>gi|302392174|ref|YP_003827994.1| ATP-dependent DNA helicase RecG [Acetohalobium arabaticum DSM 5501]
 gi|302204251|gb|ADL12929.1| ATP-dependent DNA helicase RecG [Acetohalobium arabaticum DSM 5501]
          Length = 793

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 14/118 (11%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAE L E ++    ++  +H ++KT E+  ++   R  + D+LV   ++  G+D+    L
Sbjct: 599 MAEKLDEDIFP-EFKIGLLHGQLKTDEKEAVMEGFRSQQIDILVSTTVIEVGVDVANATL 657

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITKSIQLAIDETTRRREK 710
           + ILDA + G       L Q  GR  R+   S  IL AD  T        ET R R K
Sbjct: 658 MVILDAQRFGL----AQLHQLRGRVGRSEYQSYCILVADPGT--------ETGRERMK 703


>gi|297271814|ref|XP_001110023.2| PREDICTED: sentrin-specific protease 3-like isoform 3 [Macaca
           mulatta]
          Length = 971

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 5/89 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y+ + +      + ++ + T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R
Sbjct: 830 DLYETLTIT-----QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 884

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD 658
            G   VL+  +LL  G+D+ +  LV   D
Sbjct: 885 SGSSRVLITTDLLARGIDVQQVSLVINYD 913


>gi|225677315|ref|ZP_03788292.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590642|gb|EEH11892.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 402

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TKR A+ L   L++ +     +H +++  +R  +I   R G+  ++V  ++   
Sbjct: 237 IIIFVKTKRGADQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVASR 296

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           GLDIP    V   DA +     S+   I  IGR AR
Sbjct: 297 GLDIPHIQHVINYDAPQ-----SQADYIHRIGRTAR 327


>gi|239622194|ref|ZP_04665225.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239514191|gb|EEQ54058.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 1194

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 38/221 (17%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P G +PA  A + +G+  +    ++L V  SG+    A+      R      PN I  AQ
Sbjct: 51  PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SATRSLL 267
           L  E     PH               E   PR DT   + +       R++H S T S+ 
Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDSMF 143

Query: 268 ERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                +V+   S I     G+G VE      +   +G+ +   E    L++  Y R D+ 
Sbjct: 144 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVDLV 198

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + RG F V G  +++FP        R+  FG++I+ I EF+
Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238


>gi|149011439|ref|ZP_01832686.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764429|gb|EDK71360.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP19-BS75]
          Length = 455

 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 268 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 326

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 327 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 366


>gi|296271090|ref|YP_003653722.1| transcription-repair coupling factor [Thermobispora bispora DSM
           43833]
 gi|296093877|gb|ADG89829.1| transcription-repair coupling factor [Thermobispora bispora DSM
           43833]
          Length = 1164

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 99/238 (41%), Gaps = 29/238 (12%)

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           + F +A +  A  RP + +   +  A  L +   +    + V  F ++ +    E   PR
Sbjct: 40  RPFVVAAL--ARIRPVLAVTATEREAEDLAAALDSLMDESGVAVFPAW-ETLPHERLSPR 96

Query: 241 TDTYIEKESSINEQIDRMRHS-----ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           +DT   + + +     R+ H      A   L      +       + G+G +E      V
Sbjct: 97  SDTVGRRLAVLR----RLAHPVEGDPAAGPLRVVVAPVRAVLQPIVAGLGDLEP-----V 147

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
           +L+ GD  +  E+++ LV   Y R D+   RG   V G  +++FP   E+   R+  +G+
Sbjct: 148 RLRPGDEADLDEVVARLVDNGYHRVDMVERRGEVAVRGGLVDVFPP-TEEHPLRMEFWGD 206

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
            +EEI  F      K+ +  ++++     +  P   L      + EE++ R  EL  E
Sbjct: 207 TVEEIRWF------KVADQRSLEVAPEGLFAPPCRELP-----LTEEVRRRARELAGE 253


>gi|260773352|ref|ZP_05882268.1| helicase-related protein [Vibrio metschnikovii CIP 69.14]
 gi|260612491|gb|EEX37694.1| helicase-related protein [Vibrio metschnikovii CIP 69.14]
          Length = 975

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 10/142 (7%)

Query: 541 QGIIVEQIIRPTGLVDP-PVEIRSARTQ-VEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           QG+  ++I    G  DP  +E + A ++  E VY E    A++  R L   ++K+ A+ +
Sbjct: 406 QGVNYQEIPWRNGKFDPNTLENKLATSRRAEHVYREWQ--AKKQTRTLAFCVSKKHADFM 463

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
            +Y   + I    ++S+   + R + ++ L  GK D++  ++L  EG D+P    + +  
Sbjct: 464 AQYFVAKGINAVTVYSD-SAVRRNQALQWLDQGKIDIIFSVDLFNEGTDLPSIDTILMAR 522

Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680
             +     SK   +Q +GR  R
Sbjct: 523 PTE-----SKILFLQQLGRGLR 539


>gi|256073063|ref|XP_002572852.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658018|emb|CAZ29084.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 769

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TKR  + LT  L  R   V  MH   +  +R   + + + G+ ++LV  ++  
Sbjct: 338 RTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLANFKSGRMNILVATDVAS 397

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            GLDI     V   D     F       I  IGR AR+
Sbjct: 398 RGLDIDNIEYVVNFD-----FPNQTEDYIHRIGRTARS 430


>gi|146422637|ref|XP_001487254.1| hypothetical protein PGUG_00631 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 413

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI++  RLG  +VLV  ++  EGLDI E  L+   D+       S    IQ +GR  R  
Sbjct: 8   EIVKKFRLGDINVLVATSIGEEGLDIGEVDLIVCYDS-----TSSPIKNIQRMGRTGRKR 62

Query: 683 NSKVIL 688
           + KV+L
Sbjct: 63  DGKVLL 68


>gi|322392696|ref|ZP_08066156.1| DNA helicase RecG [Streptococcus peroris ATCC 700780]
 gi|321144688|gb|EFX40089.1| DNA helicase RecG [Streptococcus peroris ATCC 700780]
          Length = 671

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +    +V  +H ++K+ E+ +I+++ +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTAH-FAGKAKVALLHGKMKSDEKDQIMQEFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|298368995|ref|ZP_06980313.1| ATP-dependent DNA helicase RecG [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282998|gb|EFI24485.1| ATP-dependent DNA helicase RecG [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 680

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E L   L E NI +  +H  +K  E+ E++ +   G+ +VLV   ++  G+D+P   L+ 
Sbjct: 496 EQLQAALPELNIGL--VHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMV 553

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I  A++ G       L Q  GR  R       V+L+A+ +++
Sbjct: 554 IEHAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPLSE 591


>gi|295394794|ref|ZP_06805009.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972390|gb|EFG48250.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 586

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 29/180 (16%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TK+  E+L + L  R      ++ ++  + R   +  LR G  D+LV  ++   
Sbjct: 258 IIMFVRTKQETEELADKLKARGFSAAAINGDIPQVVRERTVEALRSGSIDILVATDVAAR 317

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYA----DTITKSIQ 698
           GLD+    LV   D   D E ++      I   GRA R    + IL+     + + K+I+
Sbjct: 318 GLDVERISLVVNFDIPHDTESYVHR----IGRTGRAGR--TGEAILFVTPRENRLLKAIE 371

Query: 699 LA------------IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
            A            ++E T  R ++ +    H +N Q + E     + P++ E   T N+
Sbjct: 372 KATRQKVEPLVMPTVEELTVTRTQKFQDRISHTLNSQDLSE-----LRPVIEEYVNTHNV 426


>gi|294056537|ref|YP_003550195.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615870|gb|ADE56025.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 524

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 32/242 (13%)

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R+ R++VE +   +++   Q  R ++   TK+M ED+ E L  R      +H ++   
Sbjct: 224 EVRN-RSKVEVMCRLLDMEPTQ--RGIVFCNTKQMVEDVCEALNARGYTADRIHGDISQG 280

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGR 677
            R ++IR  R    ++LV  ++   GLDI +  LV   D   D E ++      I   GR
Sbjct: 281 IREKVIRRFRDNAIEILVATDVAARGLDIDDIELVFNYDLPYDPEDYVHR----IGRTGR 336

Query: 678 AARNVNSKVILYADTITK--SIQLAIDETTRR----REKQLEHNKKHNINPQSVKEKIME 731
           A R+  S   +Y   I +  +I+  I ++ RR     ++++E  +   I  Q +++K+  
Sbjct: 337 AGRSGKSITFVYGRDIRRLEAIERYIRQSIRRTRIPSQEEVEGYRADKIFNQ-LRDKLEA 395

Query: 732 V--------IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
                    +D +L  DA  T   I +  + +       H +  R    +A DN  ++E+
Sbjct: 396 AEFKNYDHQVDRLL--DAGHTPTDIASALIDM------LHTEDERSSETIAEDNEPYQES 447

Query: 784 AR 785
           AR
Sbjct: 448 AR 449


>gi|268319221|ref|YP_003292877.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii FI9785]
 gi|262397596|emb|CAX66610.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii FI9785]
          Length = 679

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 6/89 (6%)

Query: 595 AEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           AEDL   +  Y +N  V  +H ++K  ++ EI+     GK ++LV  +++  G+D+P   
Sbjct: 488 AEDLQAKIAHYFKNENVVLLHGQMKGDQKNEIMDSFAAGKINILVTTSVIEVGVDVPNAN 547

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
           ++ I +AD+ G     + L Q  GR  R 
Sbjct: 548 MMVIFNADRFGL----SQLHQLRGRIGRG 572


>gi|290579830|ref|YP_003484222.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025]
 gi|254996729|dbj|BAH87330.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025]
          Length = 671

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + EDL  Y +  +  +  MH  +K  E+  I++  + G  D+LV   ++  G+++P   +
Sbjct: 484 LEEDLKAY-FASSANIALMHGRMKNDEKEAIMQAFKKGSIDILVSTTVIEVGVNVPNATI 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARN 681
           + I+DAD+ G     + L Q  GR  R 
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRG 566


>gi|156973818|ref|YP_001444725.1| transcription-repair coupling factor [Vibrio harveyi ATCC BAA-1116]
 gi|156525412|gb|ABU70498.1| hypothetical protein VIBHAR_01528 [Vibrio harveyi ATCC BAA-1116]
          Length = 1153

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 61/299 (20%), Positives = 124/299 (41%), Gaps = 36/299 (12%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L  + G+     +A++ +     ++++ P+  +A +L +E + F      +  VS +  +
Sbjct: 21  LGNLPGAALAMAIAELAKQHSSHSLLVVPDPQIALKLQAEIEQF-----TDQPVSLFPDW 75

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           +   Y    D +   +  I+++I R+    T+S    N   +V   + +      +   Q
Sbjct: 76  ETLPY----DNFSPHQEIISDRIARLYQLPTQS----NGVTIVPVSTVLQRQSPRDFLLQ 127

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             + +K GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  
Sbjct: 128 HTLMVKTGDQFSLDKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PYRIDF 186

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           F ++I+ I  F P   + I +++ I++     +    PT   A++  +   + +      
Sbjct: 187 FDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEF----PTTKAAIEDFRTRWRSQF----- 237

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                EA+R  + I     M  T G+  +   Y + L   +      TLF+Y+PEDS L
Sbjct: 238 -----EARREPESIY----MQVTKGTWPAGIEYWQPLFFDHT----ETLFDYLPEDSQL 283


>gi|194015931|ref|ZP_03054546.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Bacillus pumilus ATCC 7061]
 gi|194012286|gb|EDW21853.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Bacillus pumilus ATCC 7061]
          Length = 496

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 4/118 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LTE L  R      +H ++   +R+  +R  + G  DVLV  ++   GLDI  
Sbjct: 250 TKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLVATDVAARGLDI-- 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
            G+  + + D      S    I   GRA R      + +     K +  AI++TT+R+
Sbjct: 308 SGVTHVYNFDVPQDPESYVHRIGRTGRAGR--TGMAVTFITPREKDMLRAIEQTTKRK 363


>gi|239827402|ref|YP_002950026.1| type III restriction protein res subunit [Geobacillus sp. WCH70]
 gi|239807695|gb|ACS24760.1| type III restriction protein res subunit [Geobacillus sp. WCH70]
          Length = 813

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 10/133 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+   + + A+ L+EY  +RN R   +HS+   + R   I  L  G+ D +  ++L  
Sbjct: 450 RTLVFCSSIKQADFLSEYFRKRNYRTVSLHSKQTDIPRDRAIAMLEKGELDAIFTVDLFN 509

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-----VILYADTITKSIQ 698
           EG+DIP    +  +   +     S T   Q +GR  R    K     + L  +     ++
Sbjct: 510 EGVDIPSVDTLLFVRPTE-----SLTVFTQQVGRGLRLYEGKDYCVIIDLIGNYRNADVK 564

Query: 699 LAIDETTRRREKQ 711
           LA+ +T R   K+
Sbjct: 565 LALFDTERGEGKK 577


>gi|154344931|ref|XP_001568407.1| ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134065744|emb|CAM43518.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 860

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK+MAED+   L+   I    +H + +  +R   + D +     +LV  ++   
Sbjct: 657 VLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPILVATDVASR 716

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP+   V   D  +E            IGR  R  N K I  A     + +LA+D
Sbjct: 717 GLDIPDVAHVVQFDLPQE-----MDDYTHRIGRTGRAGN-KGIATAFYNRNNRRLALD 768


>gi|55823618|ref|YP_142059.1| ATP-dependent DNA helicase RecG [Streptococcus thermophilus
           CNRZ1066]
 gi|55739603|gb|AAV63244.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 672

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 11/117 (9%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + ++LTE+ +  +  V  MH  +K  E+ +I++D +  K  +LV   ++  G+++P   +
Sbjct: 485 LHQELTEF-FGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATV 543

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA----DTITKSIQLAIDETT 705
           + I+DAD+ G     + L Q  GR  R +  S  +L A    DT  K +Q A+ ETT
Sbjct: 544 MVIMDADRFGL----SQLHQLRGRVGRGDKQSYCVLVANPKNDTGKKRMQ-AMCETT 595


>gi|313225950|emb|CBY21093.1| unnamed protein product [Oikopleura dioica]
          Length = 485

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 5/98 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TKR  ++L   +    +R   +H +    ER  +++D R G+  VLV  ++  
Sbjct: 301 KILVFTDTKRDCDNLAYTMSNGRVRCAAIHGDKDQRERERVLKDFRNGQISVLVATDVAA 360

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            GLDI + G V   D     F       +  IGR AR 
Sbjct: 361 RGLDIDDIGTVINYD-----FPSQLEDYVHRIGRTARG 393


>gi|312279039|gb|ADQ63696.1| ATP-dependent DNA helicase recG, transcription-repair coupling
           factor, putative [Streptococcus thermophilus ND03]
          Length = 672

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 11/117 (9%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + ++LTE+ +  +  V  MH  +K  E+ +I++D +  K  +LV   ++  G+++P   +
Sbjct: 485 LHQELTEF-FGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATV 543

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA----DTITKSIQLAIDETT 705
           + I+DAD+ G     + L Q  GR  R +  S  +L A    DT  K +Q A+ ETT
Sbjct: 544 MVIMDADRFGL----SQLHQLRGRVGRGDKQSYCVLVANPKNDTGKKRMQ-AMCETT 595


>gi|261400667|ref|ZP_05986792.1| transcription-repair coupling factor [Neisseria lactamica ATCC
           23970]
 gi|269209577|gb|EEZ76032.1| transcription-repair coupling factor [Neisseria lactamica ATCC
           23970]
          Length = 1164

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 116/287 (40%), Gaps = 35/287 (12%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L S L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLTGRTFWLKTGQTLDIGRLKSDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V  I++     +    PT + A K  +   +  +     +  + +A             
Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFREEVDGNPNDAAVYKAV------------ 243

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF-VDESHV 478
             + G   +   Y   L   N  E   TLF+YI ED+L   +D+ H 
Sbjct: 244 --SNGHFGAGVEYYLPLFFENELE---TLFDYIGEDALFVSLDDVHA 285



 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 853 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 909

Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
              L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 910 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 945


>gi|84627487|gb|AAI11751.1| Interferon induced with helicase C domain 1 [Homo sapiens]
 gi|119631757|gb|EAX11352.1| interferon induced with helicase C domain 1 [Homo sapiens]
          Length = 1025

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 12/116 (10%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ E+I   R GK ++L+   +  EGLDI EC +V      + G + ++ +++Q  GR A
Sbjct: 770 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 823

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEV 732
           R   S  +L A + +  I+    ET     +++ +   H   N+ P+    KI+E+
Sbjct: 824 RADESTYVLVAHSGSGVIE---RETVNDFREKMMYKAIHCVQNMKPEEYAHKILEL 876


>gi|218131363|ref|ZP_03460167.1| hypothetical protein BACEGG_02978 [Bacteroides eggerthii DSM 20697]
 gi|217986295|gb|EEC52632.1| hypothetical protein BACEGG_02978 [Bacteroides eggerthii DSM 20697]
          Length = 820

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 8/82 (9%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  G
Sbjct: 615 IIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRAYERAFQLMAQVAG 674

Query: 677 RAAR-NVNSKVILYADTITKSI 697
           RA R N   +V+L   +I  SI
Sbjct: 675 RAGRKNKRGRVVLQTKSIEHSI 696


>gi|194744201|ref|XP_001954583.1| GF18341 [Drosophila ananassae]
 gi|194903996|ref|XP_001980981.1| GG24917 [Drosophila erecta]
 gi|195055753|ref|XP_001994777.1| GH14195 [Drosophila grimshawi]
 gi|195110945|ref|XP_002000040.1| GI24868 [Drosophila mojavensis]
 gi|195391782|ref|XP_002054539.1| GJ24512 [Drosophila virilis]
 gi|195499068|ref|XP_002096791.1| GE25867 [Drosophila yakuba]
 gi|190627620|gb|EDV43144.1| GF18341 [Drosophila ananassae]
 gi|190652684|gb|EDV49939.1| GG24917 [Drosophila erecta]
 gi|193892540|gb|EDV91406.1| GH14195 [Drosophila grimshawi]
 gi|193916634|gb|EDW15501.1| GI24868 [Drosophila mojavensis]
 gi|194152625|gb|EDW68059.1| GJ24512 [Drosophila virilis]
 gi|194182892|gb|EDW96503.1| GE25867 [Drosophila yakuba]
          Length = 399

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER EI+++ R
Sbjct: 258 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 313 AGQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 358


>gi|150020179|ref|YP_001305533.1| primosomal protein N' [Thermosipho melanesiensis BI429]
 gi|149792700|gb|ABR30148.1| primosomal protein N' [Thermosipho melanesiensis BI429]
          Length = 742

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII-RDLRLGKFDVLVGINLLREGLDIP 649
           T+R+  +  +    RNI VR     V+  ++ ++I + L  G+ DVLVG  ++ +GLD+P
Sbjct: 511 TERIELEFQKLFPGRNI-VRVDTEVVRDFKKFQVILKKLYSGEIDVLVGTKMITKGLDVP 569

Query: 650 ECGLVAILDADKEGFLRSKTS-------LIQTIGRAAR 680
              L+ ++D D    +    S       L+Q +GRA R
Sbjct: 570 TVNLIGVIDVDAIQNIPDYNSSLNLFRLLVQVVGRAGR 607


>gi|24645031|ref|NP_649788.2| eIF4AIII [Drosophila melanogaster]
 gi|7299019|gb|AAF54221.1| eIF4AIII [Drosophila melanogaster]
          Length = 399

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER EI+++ R
Sbjct: 258 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 313 AGQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 358


>gi|300716251|ref|YP_003741054.1| transcription-repair-coupling factor [Erwinia billingiae Eb661]
 gi|299062087|emb|CAX59203.1| Transcription-repair-coupling factor [Erwinia billingiae Eb661]
          Length = 1147

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 59/300 (19%), Positives = 125/300 (41%), Gaps = 43/300 (14%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TG+      A++IE    P +++AP+   A +LY E K F     +   ++ ++    +
Sbjct: 22  LTGAACAVECAEIIERHPGPVMLIAPDMQNALRLYDEIKQFTDEPVMS--LADWETLPFD 79

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           ++ P  D    + S++  Q+  M          +LL+R     V   S ++G   V    
Sbjct: 80  SFSPHQDIISSRLSTLY-QLPMMERGVLILPVNTLLQR-----VCPHSFLHGHALV---- 129

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
                +K G  + +  L S L +  Y+  D  +  G +   G  ++++P    D  +R+ 
Sbjct: 130 -----MKKGQRLSRDTLRSQLEQAGYRHVDQVMEHGEYATRGALLDLYPMG-SDQPYRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            F ++I+ +  F   + + +  V  + +     + T +  +       +E  ++R     
Sbjct: 184 FFDDEIDSLRLFDVDSQRTLEEVPAVNLLPAHEFPTDKAAIELFRTQWREHFEVR----- 238

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                 E++ + Q++        + G+  +   Y + L      +P P LF Y+PE++LL
Sbjct: 239 -----RESEHIYQQV--------SKGTLPTGIEYWQPLFF---DQPLPALFSYLPENTLL 282


>gi|258653503|ref|YP_003202659.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258556728|gb|ACV79670.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
           44233]
          Length = 607

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +G   ++ V TK   + +   L  R +    M+ +V   ER +II  LR G+ DVL
Sbjct: 260 LQVTEGDAAIVFVRTKEACDQVGTDLLARGVSAAVMNGDVPQKEREKIIERLRDGRLDVL 319

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  ++   GLD+    LV   DA  E       + +  IGR  R   +   L
Sbjct: 320 VATDVAARGLDVDRIDLVVNFDAPGE-----PEAYVHRIGRTGRAGRTGTAL 366


>gi|195480298|ref|XP_002101215.1| GE17497 [Drosophila yakuba]
 gi|194188739|gb|EDX02323.1| GE17497 [Drosophila yakuba]
          Length = 962

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +A  G +I++ V TK   ED+ + +         +H +    ER  +++D R GK ++L+
Sbjct: 489 SANNGNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVLKDFRNGKSNILI 548

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             ++   GLD+ +   V   D     +  S  + +  IGR  R
Sbjct: 549 ATDVASRGLDVEDLQYVINYD-----YPNSSENYVHRIGRTGR 586


>gi|195330738|ref|XP_002032060.1| GM23722 [Drosophila sechellia]
 gi|194121003|gb|EDW43046.1| GM23722 [Drosophila sechellia]
          Length = 399

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER EI+++ R
Sbjct: 258 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 313 AGQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 358


>gi|194468146|ref|ZP_03074132.1| helicase domain protein [Lactobacillus reuteri 100-23]
 gi|194452999|gb|EDX41897.1| helicase domain protein [Lactobacillus reuteri 100-23]
          Length = 443

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 18/201 (8%)

Query: 525 TIVVSATPGSWELEQCQG--IIVEQI-IRPTGLVDPPVEIRSA---RTQVE------DVY 572
            + ++ATPG   L + +   +IV  + +R  G + P +++R A   R ++E       V 
Sbjct: 235 CLYLTATPGDTLLREIKSKRLIVNYLPLRYHGHLLPEIKVRLAFGWRRRLERHQLPPQVI 294

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            ++    ++G R LL V        +   L       R+        +R+E ++ +R G 
Sbjct: 295 QQLQKTLKEGHRFLLFVPHIADLALVKAALQHSFTTFRFATVHASDPQRLEKVQKMRDGD 354

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NVNSKVILY 689
           +D LV  ++L  G+  PE   V +L AD   F  S ++L+Q  GRA R       +V+ +
Sbjct: 355 YDFLVTTSILERGVTFPEID-VYVLGADDPVF--SSSALVQIAGRAGRAQSRPTGRVVFW 411

Query: 690 ADTITKSIQLAIDETTRRREK 710
            +     I  A+ +     +K
Sbjct: 412 INCNCHQINQAVSQVKYLNQK 432


>gi|74625309|sp|Q9P6U9|DED1_NEUCR RecName: Full=ATP-dependent RNA helicase ded-1
 gi|7635831|emb|CAB88635.1| probable ATP-dependent RNA helicase DED1 [Neurospora crassa]
          Length = 688

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L    G   L+ V TKRMA+ L+++L  +N     +H +    ER   +   R G+  +L
Sbjct: 448 LHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPIL 507

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 508 VATAVAARGLDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 552


>gi|55821697|ref|YP_140139.1| ATP-dependent DNA helicase RecG [Streptococcus thermophilus LMG
           18311]
 gi|55737682|gb|AAV61324.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311]
          Length = 672

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 11/117 (9%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + ++LTE+ +  +  V  MH  +K  E+ +I++D +  K  +LV   ++  G+++P   +
Sbjct: 485 LHQELTEF-FGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATV 543

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA----DTITKSIQLAIDETT 705
           + I+DAD+ G     + L Q  GR  R +  S  +L A    DT  K +Q A+ ETT
Sbjct: 544 MVIMDADRFGL----SQLHQLRGRVGRGDKQSYCVLVANPKNDTGKKRMQ-AMCETT 595


>gi|15677148|ref|NP_274301.1| transcription-repair coupling factor [Neisseria meningitidis MC58]
 gi|7226520|gb|AAF41657.1| transcription-repair coupling factor [Neisseria meningitidis MC58]
          Length = 1379

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 116/287 (40%), Gaps = 35/287 (12%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L S L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V  I++     +    PT + A K  +   +  +     +  + +A             
Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFREEVDGNPNDAAVYKAV------------ 243

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF-VDESHV 478
             + G   +   Y   L   N  E   TLF+YI ED+L   +D+ H 
Sbjct: 244 --SNGHFGAGVEYYLPLFFENELE---TLFDYIGEDALFVSLDDVHA 285



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 1070 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1126

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 1127 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1162


>gi|258565145|ref|XP_002583317.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237907018|gb|EEP81419.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 1194

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T  ++  + DLR GK ++++  ++L EG+D+P C LV   D     F ++  S IQ  GR
Sbjct: 226 TKAQMTALDDLRNGKKNLIIATSVLEEGIDVPACDLVICFD-----FPQNLRSFIQRRGR 280

Query: 678 AARNVNSKVILYAD 691
            AR   SK  L+ D
Sbjct: 281 -ARKKGSKFALFVD 293


>gi|227494914|ref|ZP_03925230.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
 gi|226831366|gb|EEH63749.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
          Length = 528

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           +V   I  A ++GL ++ T  TKR A  L+E L  R   V  +H ++    R + +R  R
Sbjct: 283 EVVARILQARERGLAVIFT-KTKRTAATLSEDLSARGFAVASLHGDLGQGAREQAMRAFR 341

Query: 630 LGKFDVLVGINLLREGLDI 648
            GK DVLV  ++   G+D+
Sbjct: 342 SGKVDVLVATDVAARGIDV 360


>gi|71995718|ref|NP_497615.2| hypothetical protein Y71H2AM.19 [Caenorhabditis elegans]
 gi|66275464|gb|AAY43989.1| Hypothetical protein Y71H2AM.19 [Caenorhabditis elegans]
          Length = 643

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A DL  YL  +N  V  +H ++K  ER + +   R G   +LV   +   G
Sbjct: 431 LVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARG 490

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D  +D + ++    +T  +  +G A    N K
Sbjct: 491 LDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDK 534


>gi|10039335|dbj|BAB13310.1| Vasa-related protein PoVAS1 [Ephydatia fluviatilis]
          Length = 546

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 36/68 (52%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TKR A+ L  YL + +     +H +    ER E +RD R G   VLV  ++  
Sbjct: 346 RTLVFVETKRNADFLATYLSQESFPTTSIHGDRFQREREEALRDFRSGLAPVLVATSVAA 405

Query: 644 EGLDIPEC 651
            GLDIP+ 
Sbjct: 406 RGLDIPDV 413


>gi|57168600|ref|ZP_00367733.1| ATP-dependent DNA helicase RecG [Campylobacter coli RM2228]
 gi|57020105|gb|EAL56782.1| ATP-dependent DNA helicase RecG [Campylobacter coli RM2228]
          Length = 604

 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 147 YHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTM-AKVIEAMQRPAIVMAPNKI 204
           + P+ DQ  A+  + + + S+E K ++++G  G GKT  +    +    + AI+MAP  I
Sbjct: 224 FSPTRDQLNALKDIEQDLGSKEAKRRVIMGDVGCGKTLVLLGAALMVYPKQAILMAPTSI 283

Query: 205 LAAQLYSEFKNFFP 218
           LA QLY E K   P
Sbjct: 284 LANQLYEEAKKLLP 297


>gi|213409157|ref|XP_002175349.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Schizosaccharomyces japonicus yFS275]
 gi|212003396|gb|EEB09056.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Schizosaccharomyces japonicus yFS275]
          Length = 672

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 57/138 (41%), Gaps = 12/138 (8%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V  KR  E L + LY    RV  +H      +R   I  LR    D+LV  +L   
Sbjct: 530 IVVFVNLKRNCESLAKALYNMGWRVVTLHGSKSQEQRERAIEQLRNHSADILVATDLAGR 589

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-------YAD---TIT 694
           G+DIP   LV   +  K   +   T  I   GRA ++  +   L       Y D    ++
Sbjct: 590 GIDIPNVSLVVNYNMAKS--IEDYTHRIGRTGRAGKHGTAITFLGPEDTGVYYDLRLMLS 647

Query: 695 KSIQLAIDETTRRREKQL 712
           KS    I E  RR E  L
Sbjct: 648 KSANSHIPEELRRHEAAL 665


>gi|149180233|ref|ZP_01858738.1| DNA/RNA helicase [Bacillus sp. SG-1]
 gi|148852425|gb|EDL66570.1| DNA/RNA helicase [Bacillus sp. SG-1]
          Length = 814

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R A  L++Y  ++  +   +HS+ K + R E IR L  G  D +  ++L  EG+DIP   
Sbjct: 453 RQAVFLSDYFNKKGYQTVSLHSQQKNISRKEAIRQLEDGILDAIFTVDLFNEGVDIPAVD 512

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +  +   +     S T   Q IGR  R  +SK
Sbjct: 513 TLLFVRPTE-----SLTVFTQQIGRGLRLHSSK 540


>gi|19528517|gb|AAL90373.1| RE50350p [Drosophila melanogaster]
          Length = 399

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER EI+++ R
Sbjct: 258 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 313 AGQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 358


>gi|254756954|ref|ZP_05208982.1| DEAD/DEAH box helicase [Bacillus anthracis str. Australia 94]
          Length = 516

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363

Query: 710 KQLE 713
            +++
Sbjct: 364 DRMD 367


>gi|58697110|ref|ZP_00372550.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58698416|ref|ZP_00373327.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630895|ref|YP_002727686.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp.
           wRi]
 gi|58535071|gb|EAL59159.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58536598|gb|EAL59931.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592876|gb|ACN95895.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp.
           wRi]
          Length = 402

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TKR A+ L   L++ +     +H +++  +R  +I   R G+  ++V  ++   
Sbjct: 237 IIIFVKTKRGADQLAHRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVASR 296

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           GLDIP    V   DA +     S+   I  IGR AR
Sbjct: 297 GLDIPHIQHVINYDAPQ-----SQADYIHRIGRTAR 327


>gi|295689355|ref|YP_003593048.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295431258|gb|ADG10430.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
           21756]
          Length = 732

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 23/177 (12%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+   T+     L   L ER   V  +  E+   ER + ++ LR G   V V  ++   G
Sbjct: 247 LVFANTRESVRGLHNKLRERGFAVVGLSGELSQRERADALQALRDGHARVCVATDVAARG 306

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P+ GLV   +        +K +L+   GR  R     V            L +  T 
Sbjct: 307 LDLPDLGLVIHAE-----LPINKATLLHRSGRTGRAGKKGV----------SALVVPYTR 351

Query: 706 RRREKQL------EHNKKHNINPQSVKEKIMEVI--DPILLEDAATTNISIDAQQLS 754
           RR+ +QL      E +     +  S++EK  E +  DPI  E A   +I++    L+
Sbjct: 352 RRKAEQLLYAAGVEADWGGAPSADSIREKDQERLLEDPIFAEAATEEDIALAEAMLA 408


>gi|251783245|ref|YP_002997550.1| ATP-dependent DNA helicase RecG [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391877|dbj|BAH82336.1| ATP-dependent DNA helicase RecG [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 676

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 7/106 (6%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           ++ + R+  MH ++K  E+  I++  +  + D+LV   ++  G+++P   ++ I+DAD+ 
Sbjct: 497 FKASARIALMHGKMKADEKEAIMQAFKAQEIDLLVSTTVIEVGVNVPNASIMVIMDADRF 556

Query: 663 GFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQ--LAIDETT 705
           G     + L Q  GR  R +  S  IL A+  T+S +  +AI  TT
Sbjct: 557 GL----SQLHQLRGRVGRGHKQSYAILVANPKTESGKERMAIMTTT 598


>gi|262198049|ref|YP_003269258.1| transcription-repair coupling factor [Haliangium ochraceum DSM
           14365]
 gi|262081396|gb|ACY17365.1| transcription-repair coupling factor [Haliangium ochraceum DSM
           14365]
          Length = 1257

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 12/215 (5%)

Query: 175 GVTGSGKTFTMAKVIE-AMQR--PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G+T +      A++ E A +R  P +V+AP++  A  L  +   F PH       +    
Sbjct: 25  GLTRASLALVAARLAERADERAGPVVVVAPDESSARDLAQDVAFFLPHAQHAAAGTEPLA 84

Query: 232 YQPEAYVPRTDT--YIEKESSINEQIDRM----RHSATRSLLERNDCIVVSSVSCIYGIG 285
             P  ++P  DT  Y E          RM    R +   +LL     +V+S+ + +  + 
Sbjct: 85  PPPALHLPALDTSPYAELSPDRLALAQRMAGLVRLARGGALL--GPVVVLSAPALLRRVM 142

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
             E+       L   D  ++      L++  Y R  +    GTF V G  I++F + L  
Sbjct: 143 PREALLARTAVLARDDEFDRDATAERLLRAGYTRAPVVEDAGTFAVRGGVIDVF-TPLYR 201

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
              R+ +FG+ +E I  F P + + +R+++ + ++
Sbjct: 202 YPARIELFGDMVESIRLFDPESQRTLRDLDQVYVH 236


>gi|225439904|ref|XP_002279705.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 524

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ILL V +K  A++L   L   +IRV  +H+++   +R   + D R GK  VL+  +++  
Sbjct: 370 ILLFVQSKERAKELYTELAFDDIRVDVIHADLSQSQRENAVDDFRAGKTWVLIATDVIAR 429

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G+  +++ D   F  S  + I  IGR+ R
Sbjct: 430 GMDFK--GINCVINYD---FPDSPAAYIHRIGRSGR 460


>gi|42779348|ref|NP_976595.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|206977074|ref|ZP_03237974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217957807|ref|YP_002336351.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|222094007|ref|YP_002528058.1| dead/deah box helicase [Bacillus cereus Q1]
 gi|229137077|ref|ZP_04265701.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST26]
 gi|229194624|ref|ZP_04321421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
 gi|81700027|sp|Q73EU1|CSHA_BACC1 RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|42735263|gb|AAS39203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
 gi|206744723|gb|EDZ56130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217064501|gb|ACJ78751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|221238056|gb|ACM10766.1| DEAD/DEAH box helicase [Bacillus cereus Q1]
 gi|228588845|gb|EEK46866.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
 gi|228646384|gb|EEL02594.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST26]
 gi|324324246|gb|ADY19506.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 525

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363

Query: 710 KQLE 713
            +++
Sbjct: 364 DRMD 367


>gi|68536289|ref|YP_250994.1| ATP-dependent DNA helicase [Corynebacterium jeikeium K411]
 gi|68263888|emb|CAI37376.1| ATP-dependent DNA helicase [Corynebacterium jeikeium K411]
          Length = 721

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
             RV  +H ++   ++ ++++D   GK DVLV   ++  G+D+P   ++ IL+A+  GF
Sbjct: 542 GCRVAMLHGKMDPADKDQVMQDFAAGKIDVLVATTVIEVGVDVPNASMMMILEAENFGF 600


>gi|116628420|ref|YP_821039.1| ATP-dependent DNA helicase RecG [Streptococcus thermophilus LMD-9]
 gi|116101697|gb|ABJ66843.1| ATP-dependent DNA helicase RecG [Streptococcus thermophilus LMD-9]
          Length = 672

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 11/117 (9%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + ++LTE+ +  +  V  MH  +K  E+ +I++D +  K  +LV   ++  G+++P   +
Sbjct: 485 LHQELTEF-FGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATV 543

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA----DTITKSIQLAIDETT 705
           + I+DAD+ G     + L Q  GR  R +  S  +L A    DT  K +Q A+ ETT
Sbjct: 544 MVIMDADRFGL----SQLHQLRGRVGRGDKQSYCVLVANPKNDTGKKRMQ-AMCETT 595


>gi|319893030|ref|YP_004149905.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162726|gb|ADV06269.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323463915|gb|ADX76068.1| DEAD-box ATP dependent RNA helicase, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 495

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
            G+  + + D      S T  I   GRA +  +   + + + I       I++T RR+ +
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK--HGIAVTFVNPIEMDYIRQIEQTNRRQMR 364

Query: 711 QL 712
            L
Sbjct: 365 AL 366


>gi|190891737|ref|YP_001978279.1| ATP-dependent DNA helicase [Rhizobium etli CIAT 652]
 gi|190697016|gb|ACE91101.1| ATP-dependent DNA helicase protein [Rhizobium etli CIAT 652]
          Length = 701

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 6/75 (8%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTF----TMAKVIEAMQRPAIVMAP 201
           + P+  Q  AIA +LK +   E+ ++LL G  GSGKT     +MA VIE+  + A++MAP
Sbjct: 272 FSPTSSQNEAIADILKDMAGTERMLRLLQGDVGSGKTLVALMSMAAVIESGGQ-AVLMAP 330

Query: 202 NKILAAQLYSEFKNF 216
            +ILA Q ++    F
Sbjct: 331 TEILARQHHATISKF 345


>gi|152013501|sp|A4RHF1|DED1_MAGO7 RecName: Full=ATP-dependent RNA helicase DED1
          Length = 671

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L+   G   L+ V TKR A++L+++L  +N+    +H +    ER   +   R G+  +L
Sbjct: 444 LSTHGGGLTLIFVETKRNADELSDFLQNQNLPATSIHGDRTQRERERALEMFRTGRCPIL 503

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 504 VATAVAARGLDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 548


>gi|19113775|ref|NP_592863.1| ATP-dependent RNA helicase, eIF4A related (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1352438|sp|Q10055|FAL1_SCHPO RecName: Full=ATP-dependent RNA helicase fal1
 gi|1103737|emb|CAA92238.1| ATP-dependent RNA helicase, eIF4A related (predicted)
           [Schizosaccharomyces pombe]
          Length = 394

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   ++R  + LTE + E N  V  MH E+   ER  I++D R
Sbjct: 253 DLYDTLTIT-----QAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFR 307

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  A++E +       I  IGR+ R
Sbjct: 308 QGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENY-------IHRIGRSGR 353


>gi|67475258|ref|XP_653330.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56470272|gb|EAL47944.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 578

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 15/117 (12%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E + D +   A +G + ++ V TKR A+ L  YLY+   +V  +H +     R +  RD 
Sbjct: 375 EAILDVLGEFAGKGQKTVIFVETKRGADILENYLYDHGYKVDSIHGD-----RSQADRDF 429

Query: 629 RLGKF-----DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            L +F      +LV  ++   GLDIP+  +V   D   E       S +  +GR  R
Sbjct: 430 SLKRFKENVIQLLVATDVASRGLDIPDIEVVINYDMPNE-----IESYVHRVGRTGR 481


>gi|322377446|ref|ZP_08051937.1| ATP-dependent DNA helicase RecG [Streptococcus sp. M334]
 gi|321281646|gb|EFX58655.1| ATP-dependent DNA helicase RecG [Streptococcus sp. M334]
          Length = 671

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +    +V  +H ++K+ E+ +I++D +  K ++LV   ++  G+++P   +
Sbjct: 484 LSEELTAH-FAGKAKVALLHGKMKSDEKDQIMQDFKERKTNILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|302800610|ref|XP_002982062.1| hypothetical protein SELMODRAFT_421514 [Selaginella moellendorffii]
 gi|300150078|gb|EFJ16730.1| hypothetical protein SELMODRAFT_421514 [Selaginella moellendorffii]
          Length = 497

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 15/153 (9%)

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVE-DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           I+E+     G  D  +   S++ Q+  DV DE   A  Q LR ++ V     A+ LT  L
Sbjct: 281 ILEEKAILDGTADDQIRAISSKVQLLLDVLDEYKSA--QDLRCIVFVERVIAAKVLTLLL 338

Query: 603 YER-NIRVRYMHSEVKTLERIEI------IRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
             R  +R + + S    L+ + +      + D R GK +V+V  N+  EGLDI  C LV 
Sbjct: 339 NSRPYVRAQCVASHRNKLKGLTLATQRNSLEDFRAGKANVIVATNVAEEGLDIQSCSLVI 398

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             +  K     ++ S IQ+ GRA +  +  VIL
Sbjct: 399 RFNMPK-----TERSSIQSRGRARKQGSDYVIL 426


>gi|254557077|ref|YP_003063494.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|254046004|gb|ACT62797.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
          Length = 447

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 7/108 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+   TK   ++LT YL ++ + V  +H +++  ER  ++RD++  K+  +V  +L   
Sbjct: 247 VLIFANTKERVQELTHYLRQQGLTVAMIHGDIQPRERKRVMRDVQQLKYQFVVATDLAAR 306

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYA 690
           G+DI   G+  +++ D    L      I  +GR  RN    + + LY+
Sbjct: 307 GIDIE--GVSHVINDDIPNDLE---FFIHRVGRTGRNGMAGTAITLYS 349


>gi|300779517|ref|ZP_07089375.1| possible helicase [Chryseobacterium gleum ATCC 35910]
 gi|300505027|gb|EFK36167.1| possible helicase [Chryseobacterium gleum ATCC 35910]
          Length = 1100

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 107/250 (42%), Gaps = 50/250 (20%)

Query: 465 IPEDSLLFVDESHVTIPQI-SGMYRGDFHRKATLAEYGFRLPSCMDN-RPLRFEEWNCLR 522
           I + + LF     ++ PQI +G+  GD   K +   +   L   MD     + +EWN ++
Sbjct: 238 IEDANSLFESNVIISTPQIITGILNGDVKIKTSFLNWCNLL--IMDEAHHSQAKEWNNIK 295

Query: 523 -------PTTIVVSATPGSWELEQCQGIIV--------------EQIIRPTGLVDPPVE- 560
                     ++ +ATP   + ++ QG ++              +QI+    L   P++ 
Sbjct: 296 VQLETYNKPILLFTATPFRNDKKRLQGKVIYDYPLSLAQRDNYYKQIVFHPILEFNPLKS 355

Query: 561 --------IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVR 610
                   I      +E  YD I +A          V T   AE++ E +Y+  +     
Sbjct: 356 DQLIAEKAISILEKDIEGKYDHILMAR---------VDTMSKAEEVFEKIYKPYQKYNPV 406

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           ++HS +K   R +I+ D+  GK  ++V +++L EG D+P+  + A+ D  K     + T+
Sbjct: 407 FIHSGIKQAIRKKILEDIIAGKHKIIVCVDMLGEGFDLPQLKICALHDLHK-----NITT 461

Query: 671 LIQTIGRAAR 680
             Q  GR  R
Sbjct: 462 SFQFFGRFTR 471


>gi|24380195|ref|NP_722150.1| putative ATP-dependent DNA helicase, RecG [Streptococcus mutans
           UA159]
 gi|24378200|gb|AAN59456.1|AE015010_5 putative ATP-dependent DNA helicase, RecG [Streptococcus mutans
           UA159]
          Length = 671

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + EDL  Y +  +  +  MH  +K  E+  I++  + G  D+LV   ++  G+++P   +
Sbjct: 484 LEEDLKAY-FASSANIALMHGRMKNDEKEAIMQAFKKGSIDILVSTTVIEVGVNVPNATI 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARN 681
           + I+DAD+ G     + L Q  GR  R 
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRG 566


>gi|325295336|ref|YP_004281850.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065784|gb|ADY73791.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 425

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 16/139 (11%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            QG   ++ V TKR A ++ + L +R+I  R +H ++   +R  +++  + GK   LV  
Sbjct: 248 HQGTSTIVFVKTKRDAAEIEKELQKRSINARAIHGDLSQRQRENVMKAFKEGKVKTLVAT 307

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   G+DI + GLV   +        +  S +  IGR  R         A     +I L
Sbjct: 308 DVAARGIDIKDVGLVINYE-----LPENPESYVHRIGRTGR---------AGREGTAISL 353

Query: 700 AIDETTRR--REKQLEHNK 716
             D   RR  R K L+H K
Sbjct: 354 VADNEKRRIYRIKGLKHIK 372


>gi|323127969|gb|ADX25266.1| ATP-dependent DNA helicase RecG [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 671

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 7/106 (6%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           ++ + R+  MH ++K  E+  I++  +  + D+LV   ++  G+++P   ++ I+DAD+ 
Sbjct: 492 FKASARIALMHGKMKADEKEAIMQAFKAQEIDLLVSTTVIEVGVNVPNASIMVIMDADRF 551

Query: 663 GFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQ--LAIDETT 705
           G     + L Q  GR  R +  S  IL A+  T+S +  +AI  TT
Sbjct: 552 GL----SQLHQLRGRVGRGHKQSYAILVANPKTESGKERMAIMTTT 593


>gi|226437753|gb|ACO56244.1| putative DEAD-box RNA helicase [Caenorhabditis elegans]
          Length = 708

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A DL  YL  +N  V  +H ++K  ER + +   R G   +LV   +   G
Sbjct: 496 LVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARG 555

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D  +D + ++    +T  +  +G A    N K
Sbjct: 556 LDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDK 599


>gi|260578990|ref|ZP_05846892.1| ATP-dependent DNA helicase [Corynebacterium jeikeium ATCC 43734]
 gi|258602855|gb|EEW16130.1| ATP-dependent DNA helicase [Corynebacterium jeikeium ATCC 43734]
          Length = 721

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
             RV  +H ++   ++ ++++D   GK DVLV   ++  G+D+P   ++ IL+A+  GF
Sbjct: 542 GCRVAMLHGKMDPADKDQVMQDFAAGKIDVLVATTVIEVGVDVPNASMMMILEAENFGF 600


>gi|160331647|ref|XP_001712530.1| rrp3 [Hemiselmis andersenii]
 gi|159765979|gb|ABW98205.1| rrp3 [Hemiselmis andersenii]
          Length = 398

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G  IL+ V T++ AE  T           Y+H  +   +R+EI++  R GK  +L+  +L
Sbjct: 241 GSSILVFVDTQKCAEKKTLLAKFLGFNAEYLHGGMNQNKRLEILQKFRFGKIKILIATDL 300

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              GLDIP   LV  L+ D     +     +  +GR AR
Sbjct: 301 ASRGLDIPNVDLV--LNYDLPHLAK---EYLHRVGRTAR 334


>gi|83745897|ref|ZP_00942954.1| Transcription-repair coupling factor [Ralstonia solanacearum UW551]
 gi|83727587|gb|EAP74708.1| Transcription-repair coupling factor [Ralstonia solanacearum UW551]
          Length = 1206

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 43/218 (19%), Positives = 92/218 (42%), Gaps = 24/218 (11%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMA---PNKILAAQLYSEFKNFFPHNAVEYFVSY--- 228
           G+ GS     +A+ +E  +  A ++A    N + A +L  E + F P   V+    +   
Sbjct: 85  GLQGSADALLLARYLEQHRATAPMLAVVCANAVDAQRLADELRWFAPQARVKLLPDWETL 144

Query: 229 -YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            YD + P       D   E+ +++++    ++  A        D ++V + + +  I   
Sbjct: 145 PYDNFSPH-----QDLISERLATLHD----LQGGAC-------DLLLVPASTALQRIAPP 188

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
              +      K G+ +++  L +      Y+     +  G + V G  I++FP     + 
Sbjct: 189 SFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMG-SPMP 247

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           +R+ +FG++IE I  F P T + +  V  +++     +
Sbjct: 248 YRLDLFGDEIETIRAFDPDTQRSLYPVNEVRLLPGREF 285


>gi|327188304|gb|EGE55523.1| ATP-dependent DNA helicase protein [Rhizobium etli CNPAF512]
          Length = 701

 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 6/75 (8%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTF----TMAKVIEAMQRPAIVMAP 201
           + P+  Q  AIA +LK +   E+ ++LL G  GSGKT     +MA VIE+  + A++MAP
Sbjct: 272 FSPTSSQNEAIADILKDMAGTERMLRLLQGDVGSGKTLVALISMAAVIESGGQ-AVLMAP 330

Query: 202 NKILAAQLYSEFKNF 216
            +ILA Q ++    F
Sbjct: 331 TEILARQHHATISKF 345


>gi|319956410|ref|YP_004167673.1| ATP-dependent DNA helicase recg [Nitratifractor salsuginis DSM
           16511]
 gi|319418814|gb|ADV45924.1| ATP-dependent DNA helicase RecG [Nitratifractor salsuginis DSM
           16511]
          Length = 606

 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 152 DQPAAIAQLLKGIHSREKV--QLLLGVTGSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQ 208
           DQ   IA++ K +  +EK   ++++G  GSGKT   +A  + A    +++MAP  ILA Q
Sbjct: 230 DQQKVIAEIQKDLSQKEKAARRMIIGDVGSGKTMVILAAAVMAGGDRSVLMAPTSILARQ 289

Query: 209 LYSEFKNFFP 218
           LY E   + P
Sbjct: 290 LYEEACKYLP 299


>gi|312866410|ref|ZP_07726628.1| ATP-dependent DNA helicase RecG [Streptococcus downei F0415]
 gi|311098104|gb|EFQ56330.1| ATP-dependent DNA helicase RecG [Streptococcus downei F0415]
          Length = 677

 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 7/95 (7%)

Query: 590 LTKRMAEDLTEYLYE---RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L  + A+DL + L E      +V  MH  +K  E+ +I++D + G+  VLV   ++  G+
Sbjct: 482 LDLKNAQDLHQELVEFFGNQAQVALMHGRMKNDEKDQIMQDFKDGQSQVLVSTTVIEVGV 541

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           ++P    + I+DAD+ G     + L Q  GR  R 
Sbjct: 542 NVPNSTAIIIMDADRFGL----SQLHQLRGRVGRG 572


>gi|229165218|ref|ZP_04293010.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
 gi|228618250|gb|EEK75283.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
          Length = 519

 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 230 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLVATDVAARGLDI-- 287

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 288 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKV 344

Query: 710 KQLE 713
            +++
Sbjct: 345 DRMD 348


>gi|225163787|ref|ZP_03726086.1| primosomal protein N' [Opitutaceae bacterium TAV2]
 gi|224801617|gb|EEG19914.1| primosomal protein N' [Opitutaceae bacterium TAV2]
          Length = 769

 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +++ + R GK D+LVG  ++ +GLD P   LV ++DAD    +       R+   L+Q  
Sbjct: 563 QLLSEFRAGKIDLLVGTQMIGKGLDFPNVTLVGLVDADISMHIPDFRANERTFQLLVQVA 622

Query: 676 GRAARN 681
           GRA R 
Sbjct: 623 GRAGRG 628


>gi|260800277|ref|XP_002595060.1| hypothetical protein BRAFLDRAFT_125765 [Branchiostoma floridae]
 gi|229280302|gb|EEN51071.1| hypothetical protein BRAFLDRAFT_125765 [Branchiostoma floridae]
          Length = 875

 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 2/115 (1%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V  K  +E+L   L  ++     +H ++   ER ++I D +     V+V  ++   
Sbjct: 484 VLIFVTKKANSEELASNLKAQDFEAGLLHGDMDQSERNKVISDFKKKTIPVMVATDVAAR 543

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           GLDIP    V   D  ++  + + T  I   GRA   V     L A++     QL
Sbjct: 544 GLDIPSIKTVVNYDVARD--IDTHTHRIGRTGRAGNKVTDISTLKANSDNPLFQL 596


>gi|30018496|ref|NP_830127.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|29894036|gb|AAP07328.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
          Length = 514

 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 230 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 287

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 288 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKM 344

Query: 710 KQLE 713
            +++
Sbjct: 345 DRMD 348


>gi|50291147|ref|XP_448006.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661189|sp|Q6FP38|DBP1_CANGA RecName: Full=ATP-dependent RNA helicase DBP1
 gi|49527317|emb|CAG60957.1| unnamed protein product [Candida glabrata]
          Length = 604

 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ LT++L  +N +   +H +    ER   +   R G  ++LV   +   G
Sbjct: 399 LVFVETKRMADQLTDFLIVQNFKATAIHGDRTQAERERALHAFRNGIANILVATAVAARG 458

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N  V
Sbjct: 459 LDIPNVTNVINYDLPTD-----IDDYVHRIGRTGRAGNVGV 494


>gi|300703955|ref|YP_003745557.1| transcription-repair ATP-dependent coupling factor, helicase
           [Ralstonia solanacearum CFBP2957]
 gi|299071618|emb|CBJ42942.1| transcription-repair ATP-dependent coupling factor, helicase
           [Ralstonia solanacearum CFBP2957]
          Length = 1147

 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 43/218 (19%), Positives = 92/218 (42%), Gaps = 24/218 (11%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMA---PNKILAAQLYSEFKNFFPHNAVEYFVSY--- 228
           G+ GS     +A+ +E  +  A ++A    N + A +L  E + F P   V+    +   
Sbjct: 26  GLQGSADALLLARYLEQHRATAPMLAVVCANAVDAQRLADELRWFAPQARVKLLPDWETL 85

Query: 229 -YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            YD + P       D   E+ +++++    ++  A        D ++V + + +  I   
Sbjct: 86  PYDNFSPH-----QDLISERLATLHD----LQGGAC-------DLLLVPASTALQRIAPP 129

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
              +      K G+ +++  L +      Y+     +  G + V G  I++FP     + 
Sbjct: 130 SFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMG-SPMP 188

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           +R+ +FG++IE I  F P T + +  V  +++     +
Sbjct: 189 YRLDLFGDEIETIRAFDPDTQRSLYPVNEVRLLPGREF 226


>gi|195452524|ref|XP_002073391.1| GK13178 [Drosophila willistoni]
 gi|194169476|gb|EDW84377.1| GK13178 [Drosophila willistoni]
          Length = 395

 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER EI+++ R
Sbjct: 254 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 309 AGQSRVLITTDVWARGIDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 354


>gi|325925019|ref|ZP_08186441.1| ATP dependent helicase, Lhr family [Xanthomonas perforans 91-118]
 gi|325544531|gb|EGD15892.1| ATP dependent helicase, Lhr family [Xanthomonas perforans 91-118]
          Length = 1464

 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 10/157 (6%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615
           P+ +  +  Q   VY ++   AQQ    L+ V T+RMAE    +L +     RV   H  
Sbjct: 252 PLSVVMSNDQWLQVYADVAALAQQHRTTLVFVNTRRMAERAARHLGDLLGKQRVSAHHGS 311

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R+   + L+ G   VLV    L  GLDI +  LV  L     G  RS  + +Q  
Sbjct: 312 LSRETRLLAEQRLKAGDLTVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRA 366

Query: 676 GRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709
           GR+   V    K  L+  T  + ++  A+ ++ RR E
Sbjct: 367 GRSGHKVGGTPKARLFPQTRDELVECAALLDSIRRGE 403


>gi|302766077|ref|XP_002966459.1| hypothetical protein SELMODRAFT_407400 [Selaginella moellendorffii]
 gi|300165879|gb|EFJ32486.1| hypothetical protein SELMODRAFT_407400 [Selaginella moellendorffii]
          Length = 497

 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 15/153 (9%)

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVE-DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           I+E+     G  D  +   S++ Q+  DV DE   A  Q LR ++ V     A+ LT  L
Sbjct: 281 ILEEKAILDGTADDQIRAISSKVQLLLDVLDEYKSA--QDLRCIVFVERVIAAKVLTLLL 338

Query: 603 YER-NIRVRYMHSEVKTLERIEI------IRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
             R  +R + + S    L+ + +      + D R GK +V+V  N+  EGLDI  C LV 
Sbjct: 339 NSRPYVRAQCVASHRNKLKGLTLATQRNSLEDFRAGKANVIVATNVAEEGLDIQSCSLVI 398

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             +  K     ++ S IQ+ GRA +  +  VIL
Sbjct: 399 RFNMPK-----TERSSIQSRGRARKQGSDYVIL 426


>gi|207743032|ref|YP_002259424.1| transcription-repair coupling factor protein [Ralstonia
           solanacearum IPO1609]
 gi|206594429|emb|CAQ61356.1| transcription-repair coupling factor protein [Ralstonia
           solanacearum IPO1609]
          Length = 1147

 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 43/218 (19%), Positives = 92/218 (42%), Gaps = 24/218 (11%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMA---PNKILAAQLYSEFKNFFPHNAVEYFVSY--- 228
           G+ GS     +A+ +E  +  A ++A    N + A +L  E + F P   V+    +   
Sbjct: 26  GLQGSADALLLARYLEQHRATAPMLAVVCANAVDAQRLADELRWFAPQARVKLLPDWETL 85

Query: 229 -YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            YD + P       D   E+ +++++    ++  A        D ++V + + +  I   
Sbjct: 86  PYDNFSPH-----QDLISERLATLHD----LQGGAC-------DLLLVPASTALQRIAPP 129

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
              +      K G+ +++  L +      Y+     +  G + V G  I++FP     + 
Sbjct: 130 SFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMG-SPMP 188

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           +R+ +FG++IE I  F P T + +  V  +++     +
Sbjct: 189 YRLDLFGDEIETIRAFDPDTQRSLYPVNEVRLLPGREF 226


>gi|38048047|gb|AAR09926.1| similar to Drosophila melanogaster CG9748 [Drosophila yakuba]
          Length = 159

 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 9/103 (8%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R  R G   +LV   +   G
Sbjct: 64  LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 123

Query: 646 LDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D  +D E +       +  IGR  R  N  V
Sbjct: 124 LDIPHVKHVINFDLPSDVEEY-------VHRIGRTGRMGNLGV 159


>gi|62751389|ref|NP_001015545.1| RNA helicase LGP2 [Bos taurus]
 gi|59858269|gb|AAX08969.1| hypothetical protein FLJ11354 [Bos taurus]
 gi|296476327|gb|DAA18442.1| RNA helicase LGP2 [Bos taurus]
          Length = 680

 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+I+  R G  ++LV  ++  EGLDIP+C +V      + G L ++ S++Q  GRA
Sbjct: 425 EVIQKFRTGTLNLLVATSVAEEGLDIPQCNVVV-----RYGLLTNEISMVQARGRA 475


>gi|297741568|emb|CBI32700.3| unnamed protein product [Vitis vinifera]
          Length = 523

 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ILL V +K  A++L   L   +IRV  +H+++   +R   + D R GK  VL+  +++  
Sbjct: 369 ILLFVQSKERAKELYTELAFDDIRVDVIHADLSQSQRENAVDDFRAGKTWVLIATDVIAR 428

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G+  +++ D   F  S  + I  IGR+ R
Sbjct: 429 GMDFK--GINCVINYD---FPDSPAAYIHRIGRSGR 459


>gi|257068572|ref|YP_003154827.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
 gi|256559390|gb|ACU85237.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
          Length = 669

 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+  AE++   L  R +    +  +V   ER +I+  LR G   VLV  ++   G
Sbjct: 327 IVFVRTRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVLVATDVAARG 386

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           LD+   GLV   D  KE       S +  IGR  R   S   L
Sbjct: 387 LDVERIGLVVNFDVPKE-----AESYVHRIGRTGRAGRSGEAL 424


>gi|312963315|ref|ZP_07777798.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
 gi|311282395|gb|EFQ60993.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
          Length = 1415

 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 12/160 (7%)

Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612
           PPV + +  A    E VYD +   A++    L+ V T+R+AE L  +L ER     V   
Sbjct: 250 PPVPLSAVMANDVWELVYDRLATLAREHRTTLIFVNTRRLAERLARHLSERLGKTAVAAH 309

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R++  + L+ G+  VL+    L  G+DI +  LV  +     G   S    +
Sbjct: 310 HGSLAKELRLDAEQRLKAGELQVLIATASLELGIDIGDVDLVCQI-----GSPGSINGFL 364

Query: 673 QTIGRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709
           Q +GR+   V    K  L+A T    I+  A+ +  RR E
Sbjct: 365 QRVGRSGHQVGGTPKGRLFATTRDDLIECAALLDCVRRGE 404


>gi|296270745|ref|YP_003653377.1| ATP-dependent DNA helicase RecG [Thermobispora bispora DSM 43833]
 gi|296093532|gb|ADG89484.1| ATP-dependent DNA helicase RecG [Thermobispora bispora DSM 43833]
          Length = 725

 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 597 DLTEYLYE---RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           D+   L E   R++R+  +H  +   E+  ++R    G+ DVLV   ++  G+D+P   +
Sbjct: 529 DVARMLGEGPLRDLRIGTLHGALPPEEKDAVMRAFSRGEIDVLVATTVIEVGVDVPNASV 588

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARN 681
           + I+DAD+ G     + L Q  GR  R 
Sbjct: 589 MVIMDADRFGV----SQLHQLRGRVGRG 612


>gi|217973128|ref|YP_002357879.1| transcription-repair coupling factor [Shewanella baltica OS223]
 gi|217498263|gb|ACK46456.1| transcription-repair coupling factor [Shewanella baltica OS223]
          Length = 1162

 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 101/216 (46%), Gaps = 25/216 (11%)

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQ 315
           R+   +  S +E+N  IV+  V+ +      ++Y S  +  LK GDS +  ++   L   
Sbjct: 96  RLETLSQLSQIEQN--IVIVPVTTLMMRLPPKAYLSANVFVLKKGDSYKLHDVRQHLTDT 153

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y   +     G F + G  ++IFP+ + ++  R+ +F  ++E I  F P T + ++ V+
Sbjct: 154 GYHSVEQVYEHGEFAIRGSILDIFPTGM-NMPLRIELFDEEVETIRHFDPETQRSLQPVD 212

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
           +I++     +    PT ++A++  ++  + R   + K     E + + Q ++ +L     
Sbjct: 213 SIRLLPAKEF----PTDSSAIEGFRQRYRRRFEVIVK-----EPESVYQLVSRNL----- 258

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                 IENY          +   TLF+Y+P+D+ L
Sbjct: 259 --MPAGIENYLPLFF-----DDTATLFDYLPKDTQL 287


>gi|89114046|gb|ABD61614.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550

Query: 683 NSKVILYADTITKSIQLAIDETTR 706
              VIL A + T     +++ T R
Sbjct: 551 AYHVILVAPSYTSPTVESVELTDR 574


>gi|45382659|ref|NP_990039.1| probable ATP-dependent RNA helicase DDX4 [Gallus gallus]
 gi|9967268|dbj|BAB12337.1| Cvh [Gallus gallus]
          Length = 662

 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 6/116 (5%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L +  G R ++ V TK+ A+ L  +L + N+    +H + +  ER   +RD R GK  +L
Sbjct: 482 LQSTGGERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSGKCQIL 541

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
           V  ++   GLDI     V   D        +    +  IGR  R  N+ K + + D
Sbjct: 542 VATSVASRGLDIENVQHVINFD-----LPNTIEDYVHRIGRTGRCGNTGKAVSFFD 592


>gi|325914735|ref|ZP_08177073.1| ATP dependent helicase, Lhr family [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539012|gb|EGD10670.1| ATP dependent helicase, Lhr family [Xanthomonas vesicatoria ATCC
           35937]
          Length = 1464

 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 9/147 (6%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615
           P+ +  +  Q   VY ++   AQQ    L+ V T+RMAE    +L +     RV   H  
Sbjct: 252 PLSVVMSNDQWLQVYADVAALAQQHRTTLVFVNTRRMAERAARHLGDLLGKQRVAAHHGS 311

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R+   + L+ G+  VLV    L  GLDI +  LV  L     G  RS  + +Q  
Sbjct: 312 LSRETRLLAEQRLKAGELTVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRA 366

Query: 676 GRAARNVNS--KVILYADTITKSIQLA 700
           GR+   V    K  L+  T  + ++ A
Sbjct: 367 GRSGHKVGGTPKARLFPQTRDELVECA 393


>gi|227513124|ref|ZP_03943173.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
 gi|227083699|gb|EEI19011.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
          Length = 453

 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 6/108 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+   T++  E+LTEYL  + ++V  +H  VK  ER +I++ ++   F  +V  +L   
Sbjct: 246 VLIFANTRKRVEELTEYLRGQGLKVAMVHGGVKPRERKQIMKRIKNLDFQFVVATDLAAR 305

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYA 690
           G+DI     V   D   E         I  +GR  RN    + + LY+
Sbjct: 306 GIDIEGVSQVINDDIPTEDL----EFFIHRVGRTGRNGMSGTSITLYS 349


>gi|159030760|emb|CAO88436.1| mfd [Microcystis aeruginosa PCC 7806]
          Length = 265

 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 5/157 (3%)

Query: 255 IDRMRHSATRSLL---ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           +  +R S+ ++L+   E    IV +  +    +   E + Q      +G  +E K L  +
Sbjct: 107 LSALRRSSGQALISHQEAGIAIVTTEKALQPHLPPREVFEQYSDNFAVGRVIEAKNLDLT 166

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           L +  Y+R  +    G +   GD ++IFP   E +  R+  FG+++E++ EF P T + +
Sbjct: 167 LARLGYERVSLVETEGQWSRRGDIVDIFPVSAE-LPVRLEFFGDELEKLREFDPATQRSL 225

Query: 372 RNVETIKIYANSHYVTPRPTL-NTAMKYIKEELKMRL 407
            ++  + +   S      P+L  T   Y++ E + +L
Sbjct: 226 DSIPNLLLTPTSFASIIAPSLPPTVADYLEAEEREKL 262


>gi|164424566|ref|XP_963538.2| hypothetical protein NCU06766 [Neurospora crassa OR74A]
 gi|157070568|gb|EAA34302.2| predicted protein [Neurospora crassa OR74A]
          Length = 1421

 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H ++   E +  +   RLG+F++LV  ++L EG+D+P C LV   D        +  S I
Sbjct: 464 HMDMTKKEDMTSLEGFRLGRFNLLVATSVLEEGIDVPICNLVICFDEPS-----NIKSFI 518

Query: 673 QTIGRAARNVNSKVIL 688
           Q  GR AR V+S + L
Sbjct: 519 QRRGR-AREVSSTLYL 533


>gi|157163925|ref|YP_001466408.1| res subunit family type III restriction enzyme [Campylobacter
           concisus 13826]
 gi|112801637|gb|EAT98981.1| ATP-dependent DNA helicase RecG [Campylobacter concisus 13826]
          Length = 606

 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQL---LKGIHSREKVQLLLGVTGSGKTFT-MAKVIEAM 192
           DI+ +     + P+ DQ  AI  +   L  + ++ +V  ++G  GSGKT   +A  +   
Sbjct: 215 DISSWLNGLPFTPTNDQLNAINDIRDDLSAVQAKRRV--IMGDVGSGKTLVILAAALSVY 272

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFP 218
            + AI+MAP  IL+ Q+Y+E K   P
Sbjct: 273 PQSAILMAPTSILSEQIYNEAKRLLP 298


>gi|106364397|dbj|BAE95223.1| ATP-dependent RNA helicase [unclutured Candidatus Nitrosocaldus
           sp.]
          Length = 589

 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 7/79 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++E++   R G++ +LV  ++  EGLDI EC LV   D      + S    +Q  GR  
Sbjct: 452 EQVEVVERFRAGEYSILVATSVGEEGLDIAECNLVIFYDN-----VPSAIRFVQRKGRTG 506

Query: 680 RNVNSKVILYA--DTITKS 696
           R +  KVI+    DTI ++
Sbjct: 507 RRMPGKVIVLVAKDTIDEA 525


>gi|496902|emb|CAA56074.1| translation initiation factor [Homo sapiens]
          Length = 411

 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 270 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  ++   GLD+P+  L+
Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLI 349


>gi|124506471|ref|XP_001351833.1| RNA helicase-1 [Plasmodium falciparum 3D7]
 gi|23504859|emb|CAD51640.1| RNA helicase-1 [Plasmodium falciparum 3D7]
          Length = 665

 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 11/120 (9%)

Query: 567 QVEDVYDEINLA------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +VE V +E  L+       + G  +L+    K+  +D+ EYL  + +    +H  +   E
Sbjct: 447 EVEYVKEEFKLSYLLEVLQKTGPPVLIFCENKKDVDDVHEYLLLKGVNAVAIHGNLGQSE 506

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E I   R GK D+LVG ++  +GLD P    V   D  K+       + +  IGR  R
Sbjct: 507 RQEAINLFREGKKDILVGTDVASKGLDFPSIEHVINYDMPKD-----IENYVHRIGRTGR 561


>gi|239637489|ref|ZP_04678463.1| transcription-repair coupling factor [Staphylococcus warneri
           L37603]
 gi|239596934|gb|EEQ79457.1| transcription-repair coupling factor [Staphylococcus warneri
           L37603]
          Length = 1169

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 27/197 (13%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE +    + L +GD ++  + L+ LV   Y+R+ +    G F + G  I+I+P  L   
Sbjct: 131 VEMWRNHQMTLNVGDDIDVDDFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGS 188

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT---LNTAMKYIKEEL 403
             R+ +F  +I+ I +F   T +   N+E++ I   S Y+        L T +K   E+ 
Sbjct: 189 PVRIELFDTEIDSIRDFDVETQRSNDNLESVDITTASDYIITDEVISHLQTQLKAAYEDT 248

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN--YSRYLTGRNPG---EPP 458
           +                ++E+ +  DL+  ET  S +  E+  +   L  R      + P
Sbjct: 249 R---------------PKIEKSVRNDLK--ETYESFKLFESTFFDHQLLRRLVAFMYDQP 291

Query: 459 PTLFEYIPEDSLLFVDE 475
            T+ +Y   D ++ VDE
Sbjct: 292 STIIDYFANDVVIAVDE 308


>gi|257051395|ref|YP_003129228.1| type III restriction protein res subunit [Halorhabdus utahensis DSM
           12940]
 gi|256690158|gb|ACV10495.1| type III restriction protein res subunit [Halorhabdus utahensis DSM
           12940]
          Length = 449

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VL    + D    L ER +R    H E  T ER EI+R  R G +  ++  N+L EG+D+
Sbjct: 336 VLVFTASTDFVYRLSERFLRPAITH-ETSTAERKEILRGFRTGAYSTVITANVLDEGIDV 394

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNV--NSKVILY 689
           P+  +  +L         S+    Q +GR  R      + +LY
Sbjct: 395 PDANVAVLLAGSG-----SQREFTQRLGRILRPTEDGGRALLY 432


>gi|91179150|gb|ABE27759.1| vasa [Chlamys farreri]
          Length = 801

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+ V  KR A+ L  YL E       +H +    ER E +RD + GK  +L+  ++  
Sbjct: 605 KTLVFVEQKRNADFLASYLSESGFPTTSIHGDRLQREREEALRDFKQGKAPILIATSVAA 664

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDIP    V   D       +S    +  IGR  R  N
Sbjct: 665 RGLDIPNVKHVINYD-----LPQSIDEYVHRIGRTGRCGN 699


>gi|207724177|ref|YP_002254575.1| transcription-repair coupling factor protein [Ralstonia
           solanacearum MolK2]
 gi|206589387|emb|CAQ36349.1| transcription-repair coupling factor protein [Ralstonia
           solanacearum MolK2]
          Length = 1147

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 43/218 (19%), Positives = 92/218 (42%), Gaps = 24/218 (11%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMA---PNKILAAQLYSEFKNFFPHNAVEYFVSY--- 228
           G+ GS     +A+ +E  +  A ++A    N + A +L  E + F P   V+    +   
Sbjct: 26  GLQGSADALLLARYLEQHRATAPMLAVVCANAVDAQRLADELRWFAPQARVKLLPDWETL 85

Query: 229 -YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            YD + P       D   E+ +++++    ++  A        D ++V + + +  I   
Sbjct: 86  PYDNFSPH-----QDLISERLATLHD----LQGGAC-------DLLLVPAPTALQRIAPP 129

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
              +      K G+ +++  L +      Y+     +  G + V G  I++FP     + 
Sbjct: 130 SFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMG-SPMP 188

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           +R+ +FG++IE I  F P T + +  V  +++     +
Sbjct: 189 YRLDLFGDEIETIRAFDPDTQRSLYPVNEVRLLPGREF 226


>gi|21243183|ref|NP_642765.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108708|gb|AAM37301.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 1480

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 10/157 (6%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615
           P+ +  +  Q   VY ++   AQQ    L+ V T+RMAE    +L +     RV   H  
Sbjct: 268 PLSVVMSNDQWLQVYADVAALAQQHRTTLVFVNTRRMAERAARHLGDLLGKQRVSAHHGS 327

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R+   + L+ G   VLV    L  GLDI +  LV  L     G  RS  + +Q  
Sbjct: 328 LSRETRLLAEQRLKAGDLTVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRA 382

Query: 676 GRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709
           GR+   V    K  L+  T  + ++  A+ ++ RR E
Sbjct: 383 GRSGHKVGGTPKARLFPQTRDELVECAALLDSIRRGE 419


>gi|77361708|ref|YP_341283.1| ATP-dependent DNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76876619|emb|CAI87841.1| ATP-dependent DNA helicase recG [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 673

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 97/245 (39%), Gaps = 46/245 (18%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           L+ +DE H          R   H++ +L E G R   C               P  +V++
Sbjct: 373 LIIIDEQH----------RFGVHQRLSLREKG-RFGDCY--------------PHQLVMT 407

Query: 530 ATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAA-QQGLRI 585
           ATP    L       +E  +    P G   P   +    T+  D+   + LA  +QG ++
Sbjct: 408 ATPIPRTLAMTAYADLETSVIDELPPGRT-PITTVALPDTRRGDIIKRVKLACHEQGRQV 466

Query: 586 LLT--------VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                      VL  + AED  + L E    + V  +H  +K  E+  I+ + + G   V
Sbjct: 467 YWVCTLIDESEVLQCQAAEDSAQQLKEALPELNVSLIHGRMKATEKQAIMSEFKAGNIHV 526

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
           LV   ++  G+D+P   L+ I + ++ G       L Q  GR  R   +   V+LY   +
Sbjct: 527 LVATTVIEVGVDVPNASLIIIENPERLGL----AQLHQLRGRVGRGATASHCVLLYHAPL 582

Query: 694 TKSIQ 698
           + + Q
Sbjct: 583 SHTAQ 587


>gi|76800822|ref|YP_325830.1| Hef nuclease [Natronomonas pharaonis DSM 2160]
 gi|76556687|emb|CAI48259.1| probable nuclease domain protein/ probable ATP-dependent helicase
           [Natronomonas pharaonis DSM 2160]
          Length = 845

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 12/120 (10%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT-------LERIEIIRDL 628
            L  + G R+++   ++  AE LT +L E     R++    K         E+ E +   
Sbjct: 366 TLGIEGGERVIVFTESRDTAESLTAFLGEHFETRRFVGQGDKDGSDGMTQTEQKETLDAF 425

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G+F+VLV  ++  EGLD+P+  LV   +   +G +RS    IQ  GR  R  + +V++
Sbjct: 426 RSGEFEVLVSTSVAEEGLDVPDVDLVLFYEPVPKG-IRS----IQRKGRTGRASDGRVVV 480


>gi|330794390|ref|XP_003285262.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
 gi|325084804|gb|EGC38224.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
          Length = 2292

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ++I+ + D + G  ++L+  N+L EG+DIPEC LV   D+     + S  SLIQ  GR  
Sbjct: 460 KQIKRVDDFKNGSCEILIATNVLEEGIDIPECKLVICFDS-----IYSVRSLIQRRGRER 514

Query: 680 RNVN 683
              N
Sbjct: 515 TQTN 518


>gi|331217131|ref|XP_003321244.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300234|gb|EFP76825.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 547

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V TKR+A+DLT+YL +       +H + +  ER  ++ + + G+  +++  ++  
Sbjct: 361 KVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQQERDWVLEEFKSGRSPIMIATDVAS 420

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
            GLD+ +   V  ++ D    +      I   GRA R   +   + AD
Sbjct: 421 RGLDVKDIAYV--INYDMPNGIEDYIHRIGRTGRAGRTGTAYSYISAD 466


>gi|220913497|ref|YP_002488806.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
 gi|219860375|gb|ACL40717.1| DEAD/DEAH box helicase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 694

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ++  V TK   EDL + L  R  +   ++ ++   +R   +  L+ G+ D+LV  ++   
Sbjct: 298 VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAAR 357

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA RN ++  IL+     K +  AI+
Sbjct: 358 GLDVERISHVINYDIPHDTESYVHR----IGRTGRAGRNGDA--ILFMTPREKYLLRAIE 411

Query: 703 ETTRRREKQLEHNKKHNIN 721
           + TR+  +Q+       +N
Sbjct: 412 KATRQSVEQMHLPTAETVN 430


>gi|194897089|ref|XP_001978588.1| GG17597 [Drosophila erecta]
 gi|190650237|gb|EDV47515.1| GG17597 [Drosophila erecta]
          Length = 955

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +A  G +I++ V TK   ED+ + +         +H +    ER  +++D R GK ++L+
Sbjct: 491 SANNGNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVLKDFRNGKSNILI 550

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             ++   GLD+ +   V   D     +  S  + +  IGR  R
Sbjct: 551 ATDVASRGLDVEDLQYVINYD-----YPNSSENYVHRIGRTGR 588


>gi|84497836|ref|ZP_00996633.1| putative transcriptional-repair coupling factor [Janibacter sp.
           HTCC2649]
 gi|84381336|gb|EAP97219.1| putative transcriptional-repair coupling factor [Janibacter sp.
           HTCC2649]
          Length = 1204

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 98/234 (41%), Gaps = 35/234 (14%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMA---------PNKIL----------AAQLYSEFKNFF 217
           TG G T T+   + A  RPA++ A         P+++           A  L +      
Sbjct: 25  TGPG-TETLDVSVSAGARPALIAAAVERLRATAPDRLPLLVVTATSREAEDLTNALGCVL 83

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS---LLERNDCIV 274
             + +  F S+ +    E   PR+DT   + + +     R+ H A+ +   +      +V
Sbjct: 84  DPDVIADFPSW-ETLPHERLSPRSDTVGRRLAVLR----RLTHPASVADDDVAHGPLSVV 138

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           VS V  +    S+       V L+ G+     E++ +L    Y R D+   RG F V G 
Sbjct: 139 VSPVRAVLQPISIGLGDLTPVALRAGEDHNLDEVVEALAGAAYSRTDLVERRGEFAVRGG 198

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
            +++FP   E+   RV  +G+ IEEI  F      K+ +  ++++ ++  +  P
Sbjct: 199 ILDVFPP-TEEHPLRVEFWGDTIEEIRWF------KVADQRSLEVASHGLWAPP 245


>gi|300707737|ref|XP_002996065.1| hypothetical protein NCER_100895 [Nosema ceranae BRL01]
 gi|239605329|gb|EEQ82394.1| hypothetical protein NCER_100895 [Nosema ceranae BRL01]
          Length = 528

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  ++  ++++   TKRM ++L + L  R  +   +H +     R  II D R G  ++L
Sbjct: 366 LNEKKNEKVIIFANTKRMCDNLEDDLSRRGYKAVAIHGDKSQNIRDRIISDFRSGYKNIL 425

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  ++   GLDI    LV   D     F  +    +  IGR AR
Sbjct: 426 IATDVAARGLDIKNVALVINYD-----FPNNIEDYVHRIGRTAR 464


>gi|227510196|ref|ZP_03940245.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190401|gb|EEI70468.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 453

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 6/108 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+   T++  E+LTEYL  + ++V  +H  VK  ER +I++ ++   F  +V  +L   
Sbjct: 246 VLIFANTRKRVEELTEYLRGQGLKVAMVHGGVKPRERKQIMKRIKNLDFQFVVATDLAAR 305

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYA 690
           G+DI     V   D   E         I  +GR  RN    + + LY+
Sbjct: 306 GIDIEGVSQVINDDIPTEDL----EFFIHRVGRTGRNGMSGTSITLYS 349


>gi|190407384|gb|EDV10651.1| ATP-dependent RNA helicase DDX25 [Saccharomyces cerevisiae RM11-1a]
 gi|207341250|gb|EDZ69357.1| YOR046Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259149529|emb|CAY86333.1| Dbp5p [Saccharomyces cerevisiae EC1118]
 gi|323335582|gb|EGA76866.1| Dbp5p [Saccharomyces cerevisiae Vin13]
 gi|323352404|gb|EGA84939.1| Dbp5p [Saccharomyces cerevisiae VL3]
          Length = 482

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L      V  +H +++T ER  +I D R G+  VL+  N+L  G
Sbjct: 334 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 393

Query: 646 LDIPECGLVAILD----ADKEGFLRSKTSLIQTIGRAAR 680
           +DIP   +V   D    A+ +       + I  IGR  R
Sbjct: 394 IDIPTVSMVVNYDLPTLANGQA---DPATYIHRIGRTGR 429


>gi|156089485|ref|XP_001612149.1| eukaryotic translation initiation factor 4A [Babesia bovis T2Bo]
 gi|154799403|gb|EDO08581.1| eukaryotic translation initiation factor 4A, putative [Babesia
           bovis]
          Length = 402

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT  + ER+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 277 TRRKVDMLTSKMQERDFTVSSMHGDMSQNERDLIMREFRSGSTRVLITTDLLARGIDVQQ 336

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        S  + I  IGR+ R
Sbjct: 337 VSLVINYD-----LPMSPDNYIHRIGRSGR 361


>gi|160875623|ref|YP_001554939.1| transcription-repair coupling factor [Shewanella baltica OS195]
 gi|160861145|gb|ABX49679.1| transcription-repair coupling factor [Shewanella baltica OS195]
 gi|315267811|gb|ADT94664.1| transcription-repair coupling factor [Shewanella baltica OS678]
          Length = 1165

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 101/216 (46%), Gaps = 25/216 (11%)

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQ 315
           R+   +  S +E+N  IV+  V+ +      ++Y S  +  LK GDS +  ++   L   
Sbjct: 96  RLETLSQLSQIEQN--IVIVPVTTLMMRLPPKAYLSANVFVLKKGDSYKLHDVRQHLTDT 153

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y   +     G F + G  ++IFP+ + ++  R+ +F  ++E I  F P T + ++ V+
Sbjct: 154 GYHSVEQVYEHGEFAIRGSILDIFPTGM-NMPLRIELFDEEVETIRHFDPETQRSLQPVD 212

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
           +I++     +    PT ++A++  ++  + R   + K     E + + Q ++ +L     
Sbjct: 213 SIRLLPAKEF----PTDSSAIEGFRQRYRRRFEVIVK-----EPESVYQLVSRNL----- 258

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                 IENY          +   TLF+Y+P+D+ L
Sbjct: 259 --MPAGIENYLPLFF-----DDTATLFDYLPKDTQL 287


>gi|161783812|sp|Q7SCC1|DCL2_NEUCR RecName: Full=Dicer-like protein 2; Includes: RecName:
           Full=Endoribonuclease dcl-2; Includes: RecName:
           Full=ATP-dependent helicase dcl-2
 gi|18376024|emb|CAB91758.2| related to RNA helicase/RNAseIII CAF [Neurospora crassa]
          Length = 1540

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H ++   E +  +   RLG+F++LV  ++L EG+D+P C LV   D        +  S I
Sbjct: 466 HMDMTKKEDMTSLEGFRLGRFNLLVATSVLEEGIDVPICNLVICFDEPS-----NIKSFI 520

Query: 673 QTIGRAARNVNSKVIL 688
           Q  GR AR V+S + L
Sbjct: 521 QRRGR-AREVSSTLYL 535


>gi|84498316|ref|ZP_00997113.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
 gi|84381816|gb|EAP97699.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
          Length = 735

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R+  DL        + +  +H  +   E+  I+RD   G  DVLV   ++  G+D+P   
Sbjct: 539 RVHADLVANPALEGLSIEILHGRLPADEKDAIMRDFASGAIDVLVSTTVIEVGVDVPNAS 598

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
           ++ ++DAD+ G     + L Q  GR  R 
Sbjct: 599 VMVVMDADRFGV----SQLHQLRGRVGRG 623


>gi|300812086|ref|ZP_07092534.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496925|gb|EFK31999.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 1158

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 65/322 (20%), Positives = 128/322 (39%), Gaps = 35/322 (10%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           SR K  LL GV        +   +  + +P +++  N+  A + Y++       + +E F
Sbjct: 21  SRIKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERYNDLSRLLADDDLELF 80

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
               +          T T +     ++ +I          L  R   ++ +     Y + 
Sbjct: 81  ALDGNL--------ATQTAVSSPDELSSRI----QCLNLLLSGRPGVVIATPQGLQYPLS 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +   + +      +GD +   +L   L +  Y R+++ +  G F + GD ++++P   E 
Sbjct: 129 APALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRES 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+  FG++I+ I  F  LT Q  R++E +          P  T+  A  ++      
Sbjct: 189 -PLRLEFFGDEIDTIKTF-DLTSQ--RSLEEL----------PEATVPAASDHV-----F 229

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEML-ETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
              +L++ GR L A  L +     LE+  E   + Q  ++  RYL    P     +L +Y
Sbjct: 230 TAEDLDRAGREL-AGDLPKEAAASLEIAQEALANGQLPDDCDRYLDYLLP--ESFSLLDY 286

Query: 465 IPEDSLLFVDESHVTIPQISGM 486
           +P   LL  ++  +    +  M
Sbjct: 287 LPAKGLLLFNDWQLIAESVKNM 308


>gi|293396556|ref|ZP_06640832.1| transcription-repair coupling factor [Serratia odorifera DSM 4582]
 gi|291420820|gb|EFE94073.1| transcription-repair coupling factor [Serratia odorifera DSM 4582]
          Length = 1159

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 54/296 (18%), Positives = 127/296 (42%), Gaps = 35/296 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE    P +++AP+   A +L  E + F      +  VS    ++  
Sbjct: 32  LTGSACAVECAEIIERHNGPVMLIAPDMQNALRLRDEIQQF-----TDQMVSTLSDWETL 86

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            Y    D++   +  I+ ++  + H  T +       I++   + +  +   E      +
Sbjct: 87  PY----DSFSPHQEIISARLSSLYHLPTMA----RGVIILPVNTLMQRVCPHEFLHGHAL 138

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            ++ G  + + +L + L +  Y+  D  +  G F   G  ++++P   E+  +R+  F +
Sbjct: 139 VMQKGQRLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEE-PYRIDFFDD 197

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ +  F   + + +  VE I +     + T +  +       +E+ ++R         
Sbjct: 198 EIDSLRIFDVDSQRTLSEVEAINLLPAHEFPTDKNAIELFRSQWREQFEVR--------- 248

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             +A+ + Q++        + G+  +   Y + L      +P P+LF Y+P+++L+
Sbjct: 249 -RDAEHIYQQV--------SKGTWPAGIEYWQPLFF---SQPLPSLFSYLPDNTLI 292


>gi|228950768|ref|ZP_04112897.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229067991|ref|ZP_04201304.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
 gi|229077588|ref|ZP_04210230.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
 gi|229176827|ref|ZP_04304229.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
 gi|228606719|gb|EEK64138.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
 gi|228705727|gb|EEL58071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
 gi|228715129|gb|EEL66992.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
 gi|228808908|gb|EEM55398.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 525

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363

Query: 710 KQLE 713
            +++
Sbjct: 364 DRMD 367


>gi|323340157|ref|ZP_08080421.1| competence protein FA [Lactobacillus ruminis ATCC 25644]
 gi|323092348|gb|EFZ34956.1| competence protein FA [Lactobacillus ruminis ATCC 25644]
          Length = 472

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 6/100 (6%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIE ++ +R GK+  LV   +L  G+  P+   V +L AD   F  +  +L+Q  GRA 
Sbjct: 376 ERIEKVQAMRDGKYRYLVTTTILERGVTFPKLN-VLVLCADASEF--NLPALVQIAGRAG 432

Query: 680 RNV---NSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
           R+    +  V  + D  TK I+ +I++  R   K   + K
Sbjct: 433 RSSERPDGHVRFFCDNYTKRIKGSIEQIKRMNRKARRYCK 472


>gi|255589747|ref|XP_002535074.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223524093|gb|EEF27309.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 465

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 5/103 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK  A+ + + L    IR    H E+    R E + D R G+   LV  ++   
Sbjct: 249 VMVFVATKYAADHVADKLNRNGIRAASFHGELSQGARTETLTDFRSGRLQALVATDVAAR 308

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           G+DI    L A+++ D     RS       IGR  R   ++V+
Sbjct: 309 GIDIAR--LPAVVNYD---LPRSAVDYTHRIGRTGRAARAQVL 346


>gi|206972279|ref|ZP_03233226.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|218235804|ref|YP_002365074.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
 gi|228919172|ref|ZP_04082546.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|229148635|ref|ZP_04276889.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
 gi|206732853|gb|EDZ50028.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|218163761|gb|ACK63753.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
 gi|228634893|gb|EEK91468.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
 gi|228840483|gb|EEM85750.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 533

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363

Query: 710 KQLE 713
            +++
Sbjct: 364 DRMD 367


>gi|160947391|ref|ZP_02094558.1| hypothetical protein PEPMIC_01325 [Parvimonas micra ATCC 33270]
 gi|158446525|gb|EDP23520.1| hypothetical protein PEPMIC_01325 [Parvimonas micra ATCC 33270]
          Length = 675

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 56/101 (55%), Gaps = 5/101 (4%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y +++ + ++H ++K +++  I++D   GK  VLV   ++  G+++P   ++ I +A++ 
Sbjct: 489 YFQDVEIEFIHGKLKPVDKDRIMKDFENGKIKVLVATTVIEVGINVPNSNIMVIYNAERF 548

Query: 663 GFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAID 702
           G     + L Q  GR  R N  S  IL ++  + +++  +D
Sbjct: 549 GL----SQLHQLRGRIGRGNYESFCILVSNNKSTNVKKRMD 585


>gi|52144993|ref|YP_081836.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
 gi|81689748|sp|Q63GX5|CSHA_BACCZ RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|51978462|gb|AAU20012.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
          Length = 528

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRR 708
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRK 362


>gi|288920380|ref|ZP_06414691.1| helicase domain protein [Frankia sp. EUN1f]
 gi|288348257|gb|EFC82523.1| helicase domain protein [Frankia sp. EUN1f]
          Length = 322

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 8/145 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   ED+ E L  R      ++ ++   +R ++I  LR G  D+LV  ++   
Sbjct: 6   MIIFVRTKSATEDVAERLRSRGFATEAINGDLGQPQREKLIAQLRDGALDLLVATDVAAR 65

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  + + +L      K +  AI+
Sbjct: 66  GLDVERVTHVVNYDIPTDPESYVHR----IGRTGRAGR--SGEALLLVTPREKGLLAAIE 119

Query: 703 ETTRRREKQLEHNKKHNINPQSVKE 727
           + TR+   ++E     ++N + V +
Sbjct: 120 KATRQPLAEMELPTAEDVNARRVAK 144


>gi|71902673|ref|YP_279476.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS6180]
 gi|71801768|gb|AAX71121.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS6180]
          Length = 1167

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 96/209 (45%), Gaps = 12/209 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G++GS K   +A      Q+  +V+   +    +L S+  +      V  F  + D
Sbjct: 26  QLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFAD 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                 ++  +   ++K  S  E +  + +  ++ +L     + +S +  +     V + 
Sbjct: 84  DVAAAEFIFAS---MDKALSRIETLQFLGNPKSQGVL----IVSLSGLRTLLPNPDVFTK 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           SQ  +QL +G+  +   L   L+   Y++    I  G F   GD ++I+    +++ +R+
Sbjct: 137 SQ--IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRL 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             FG+DI+ I +F+P T +    +E + I
Sbjct: 194 EFFGDDIDSIRQFHPETQKSFEQLEGVFI 222


>gi|85001586|ref|XP_955506.1| dead box RNA helicase [Theileria annulata strain Ankara]
 gi|65303652|emb|CAI76030.1| dead box RNA helicase, putative [Theileria annulata]
          Length = 654

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 9/123 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+    K  A+ LT  L  R  R   +H      +R  I+   R G+F++LV  ++  
Sbjct: 513 KVLIFSDLKSFADQLTSALRYRRFRAYSLHGNKTQNQRERILNMYRSGEFNILVATDVAA 572

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILY--ADTITKS-IQL 699
            GLDI +   V  LD  K     S    I  IGR  R  N  + +LY   DT++ S ++ 
Sbjct: 573 RGLDIKDIDYVINLDVPK-----SLLDYIHRIGRTGRGNNKGESLLYFPIDTLSPSKVKF 627

Query: 700 AID 702
           A D
Sbjct: 628 AQD 630


>gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
 gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
          Length = 719

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 11/155 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TK+  E++ + L  R  +   ++ ++    R   +  LR G+ D+LV  ++   
Sbjct: 376 IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVATDVAAR 435

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+    LV   D   D E ++      I   GRA R  + + IL+     K +   I+
Sbjct: 436 GLDVERISLVVNYDIPHDTESYVHR----IGRTGRAGR--DGEAILFVTPREKYMLRQIE 489

Query: 703 ETTRRREKQLEHNKKHNINP---QSVKEKIMEVID 734
           + TR++ + +      ++N    Q   E+I E I+
Sbjct: 490 KATRQKVEPMHMPTAQDVNSSRKQRFAEQITETIE 524


>gi|282878371|ref|ZP_06287163.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
 gi|281299557|gb|EFA91934.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
          Length = 558

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++    K+  + +++ L    I    MHS++   +R E++   + G+ DVLV  ++L 
Sbjct: 247 RVIIFCGAKQKVKQVSQALQRMKINCGEMHSDLDQAQRDEVMFQFKSGQIDVLVATDILS 306

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            G+DI +  +V   D   D E +       +  IGR AR
Sbjct: 307 RGIDIDDIAMVINYDVPHDAEDY-------VHRIGRTAR 338


>gi|156105935|gb|ABU49329.1| vasa [Ilyanassa obsoleta]
          Length = 411

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+ V  KR A+ L  YL +       +H +    ER E +RD + GK  VL+  N+  
Sbjct: 218 RVLVFVGQKRNADFLASYLSQSGYPTTTIHGDRLQREREEALRDFKSGKSPVLIATNVAA 277

Query: 644 EGLDIPE 650
            GLDIP+
Sbjct: 278 RGLDIPD 284


>gi|125775187|ref|XP_001358845.1| GA20384 [Drosophila pseudoobscura pseudoobscura]
 gi|195144826|ref|XP_002013397.1| GL23429 [Drosophila persimilis]
 gi|54638586|gb|EAL27988.1| GA20384 [Drosophila pseudoobscura pseudoobscura]
 gi|194102340|gb|EDW24383.1| GL23429 [Drosophila persimilis]
          Length = 399

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER EI+++ R
Sbjct: 258 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 313 AGQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 358


>gi|324993358|gb|EGC25278.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK405]
 gi|327458716|gb|EGF05064.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1057]
          Length = 523

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L     R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKISGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKR 361

Query: 709 EKQLE 713
            K L+
Sbjct: 362 MKGLK 366


>gi|239813341|ref|YP_002942251.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
 gi|239799918|gb|ACS16985.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
          Length = 424

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+ V T+  A+ + E LY+  +     H ++    R  I+   +  ++DV++  +L  
Sbjct: 247 RVLVFVATQHAAQTVAEKLYKNGVYAVPFHGDIAQGTRTGILAQFKESRWDVVIATDLAA 306

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+DI +  +V   D       RS T  I  IGR  R   S + +
Sbjct: 307 RGIDIAQLPVVINYD-----LPRSPTDYIHRIGRTGRAGESGLAI 346


>gi|156553129|ref|XP_001599839.1| PREDICTED: similar to eukaryotic translation initiation factor 4A
           [Nasonia vitripennis]
          Length = 423

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 56/98 (57%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++      + ++   T+R  + LT+++++++  V  MH +++  ER  I+R  R
Sbjct: 282 DLYDTLSIT-----QAVIFCNTRRKVDWLTDHMHQKDFTVSAMHGDMEQRERDLIMRQFR 336

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 337 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 374


>gi|148994014|ref|ZP_01823370.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP9-BS68]
 gi|168488586|ref|ZP_02712785.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP195]
 gi|147927481|gb|EDK78509.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP9-BS68]
 gi|183572842|gb|EDT93370.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae SP195]
 gi|332072525|gb|EGI83008.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae GA17570]
          Length = 671

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTTH-FACKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|24373808|ref|NP_717851.1| transcription-repair coupling factor [Shewanella oneidensis MR-1]
 gi|24348203|gb|AAN55295.1|AE015667_5 transcription-repair coupling factor [Shewanella oneidensis MR-1]
          Length = 1164

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 129/305 (42%), Gaps = 36/305 (11%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           ++Q L  + G G+  T+A +I   Q   +++  +   A  L  E        A++  +  
Sbjct: 17  QMQTLSCIAGVGQAVTLASLIRQHQGTTLIVTSDTPTALSLELELNYLLAKTAIKVRLFP 76

Query: 229 YDYYQP-EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
                P +++ P  D   ++  +++ QI    HS           +V+  V+ +      
Sbjct: 77  DRETLPYDSFSPHQDLISQRLETLS-QITHAEHS-----------VVIVPVTTLMMRLPP 124

Query: 288 ESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           +SY S  +  LK GD  +  ++   L    Y   +     G F + G  ++IFP+ + ++
Sbjct: 125 KSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGV-NM 183

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F +++E I  F P T +    V  +++     +    PT ++A++  ++  + R
Sbjct: 184 PLRIELFDDEVETIRHFDPETQRSSTPVNAVRLLPAKEF----PTDSSAIEGFRQRYRRR 239

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
              + K     E + + Q ++ +L           IENY          +   TLF+Y+P
Sbjct: 240 FEVIVK-----EPESVYQLVSRNL-------MPAGIENYLPLFF-----DEVSTLFDYLP 282

Query: 467 EDSLL 471
           +++ L
Sbjct: 283 KNTQL 287


>gi|6324620|ref|NP_014689.1| Dbp5p [Saccharomyces cerevisiae S288c]
 gi|1708152|sp|P20449|DBP5_YEAST RecName: Full=ATP-dependent RNA helicase DBP5; AltName: Full=DEAD
           box protein 5; AltName: Full=Helicase CA5/6; AltName:
           Full=Ribonucleic acid-trafficking protein 8
 gi|160380623|sp|A6ZNQ1|DBP5_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP5; AltName: Full=DEAD
           box protein 5; AltName: Full=Helicase CA5/6; AltName:
           Full=Ribonucleic acid-trafficking protein 8
 gi|1353268|gb|AAB01679.1| Dbp5p [Saccharomyces cerevisiae]
 gi|1420175|emb|CAA99237.1| DBP5 [Saccharomyces cerevisiae]
 gi|151945675|gb|EDN63916.1| RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|285814935|tpg|DAA10828.1| TPA: Dbp5p [Saccharomyces cerevisiae S288c]
          Length = 482

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L      V  +H +++T ER  +I D R G+  VL+  N+L  G
Sbjct: 334 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 393

Query: 646 LDIPECGLVAILD----ADKEGFLRSKTSLIQTIGRAAR 680
           +DIP   +V   D    A+ +       + I  IGR  R
Sbjct: 394 IDIPTVSMVVNYDLPTLANGQA---DPATYIHRIGRTGR 429


>gi|30260423|ref|NP_842800.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47525504|ref|YP_016853.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47567484|ref|ZP_00238196.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49183266|ref|YP_026518.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|49479130|ref|YP_034574.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|65317675|ref|ZP_00390634.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|118475995|ref|YP_893146.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|165871548|ref|ZP_02216194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167634144|ref|ZP_02392466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167640350|ref|ZP_02398615.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170687759|ref|ZP_02878974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|170707898|ref|ZP_02898348.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177653423|ref|ZP_02935633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190567376|ref|ZP_03020290.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|196035956|ref|ZP_03103357.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196041156|ref|ZP_03108452.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|196046212|ref|ZP_03113439.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|218901440|ref|YP_002449274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225862289|ref|YP_002747667.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227812915|ref|YP_002812924.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228912978|ref|ZP_04076622.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228925493|ref|ZP_04088587.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931740|ref|ZP_04094641.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228983493|ref|ZP_04143703.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229089370|ref|ZP_04220646.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
 gi|229119903|ref|ZP_04249162.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
 gi|229154007|ref|ZP_04282136.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           4342]
 gi|229182634|ref|ZP_04309880.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
 gi|229604746|ref|YP_002864874.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254686589|ref|ZP_05150448.1| DEAD/DEAH box helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254723571|ref|ZP_05185358.1| DEAD/DEAH box helicase [Bacillus anthracis str. A1055]
 gi|254734933|ref|ZP_05192645.1| DEAD/DEAH box helicase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254739718|ref|ZP_05197411.1| DEAD/DEAH box helicase [Bacillus anthracis str. Kruger B]
 gi|254754911|ref|ZP_05206946.1| DEAD/DEAH box helicase [Bacillus anthracis str. Vollum]
 gi|301051970|ref|YP_003790181.1| DEAD/DEAH box helicase [Bacillus anthracis CI]
 gi|81696998|sp|Q6HPE6|CSHA_BACHK RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|81715465|sp|Q81VG0|CSHA_BACAN RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|134039177|sp|A0R8U6|CSHA_BACAH RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|30253744|gb|AAP24286.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47500652|gb|AAT29328.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|47555886|gb|EAL14225.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49177193|gb|AAT52569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|49330686|gb|AAT61332.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|118415220|gb|ABK83639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|164712652|gb|EDR18183.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167511752|gb|EDR87133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167530458|gb|EDR93173.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170127256|gb|EDS96133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|170668286|gb|EDT19034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|172081463|gb|EDT66536.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190561503|gb|EDV15474.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|195991325|gb|EDX55292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196022957|gb|EDX61637.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|196028091|gb|EDX66702.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|218539043|gb|ACK91441.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225790192|gb|ACO30409.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227005398|gb|ACP15141.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228600842|gb|EEK58416.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
 gi|228629528|gb|EEK86226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           4342]
 gi|228663560|gb|EEL19141.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
 gi|228693970|gb|EEL47657.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
 gi|228776237|gb|EEM24593.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228827920|gb|EEM73653.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228834238|gb|EEM79781.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228846673|gb|EEM91681.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229269154|gb|ACQ50791.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|300374139|gb|ADK03043.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI]
          Length = 528

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363

Query: 710 KQLE 713
            +++
Sbjct: 364 DRMD 367


>gi|323346496|gb|EGA80783.1| Dbp5p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 458

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L      V  +H +++T ER  +I D R G+  VL+  N+L  G
Sbjct: 316 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 375

Query: 646 LDIPECGLVAILD----ADKEGFLRSKTSLIQTIGRAAR 680
           +DIP   +V   D    A+ +       + I  IGR  R
Sbjct: 376 IDIPTVSMVVNYDLPTLANGQA---DPATYIHRIGRTGR 411


>gi|315049467|ref|XP_003174108.1| ATP-dependent RNA helicase fal1 [Arthroderma gypseum CBS 118893]
 gi|311342075|gb|EFR01278.1| ATP-dependent RNA helicase fal1 [Arthroderma gypseum CBS 118893]
          Length = 403

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 261 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 315

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 316 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 361


>gi|126434504|ref|YP_001070195.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. JLS]
 gi|126234304|gb|ABN97704.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. JLS]
          Length = 741

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  MH  +   E+  ++   R G+ DVLV   ++  G+D+P   ++ ++DAD+ G  
Sbjct: 560 GLRLGLMHGRLSGDEKDAVMTAFRAGEIDVLVCTTVIEVGVDVPNATVMVVMDADRFGI- 618

Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690
              + L Q  GR  R  +  + L A
Sbjct: 619 ---SQLHQLRGRIGRGSHPSLCLLA 640


>gi|67528815|ref|XP_662070.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4]
 gi|40741041|gb|EAA60231.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4]
          Length = 1526

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+E+L  +      +H +    ER   +   R G++ +LV   +   G
Sbjct: 450 LIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPILVATAVAARG 509

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 510 LDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 545


>gi|302654809|ref|XP_003019203.1| hypothetical protein TRV_06752 [Trichophyton verrucosum HKI 0517]
 gi|291182911|gb|EFE38558.1| hypothetical protein TRV_06752 [Trichophyton verrucosum HKI 0517]
          Length = 403

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 261 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 315

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 316 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 361


>gi|285017596|ref|YP_003375307.1| ATP-dependent DNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283472814|emb|CBA15319.1| probable atp-dependent dna helicase protein [Xanthomonas
           albilineans]
          Length = 715

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 10/127 (7%)

Query: 566 TQVEDVYD-EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           T +ED  D E +  A  G R+  +   +   E L+  L E  +RV   H  +K+ E+   
Sbjct: 501 TLIEDAEDAETSAQAGAGNRLEASA-AQATFETLSAQLPE--LRVGLAHGRMKSAEKQAA 557

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--V 682
           +R  + G+ D+LV   ++  G+D+P   L+ I +A++ G       L Q  GR  R   V
Sbjct: 558 MRAFKQGEIDLLVATTIIEVGVDVPNASLMIIENAERLGL----AQLHQLRGRVGRGAAV 613

Query: 683 NSKVILY 689
           +S V++Y
Sbjct: 614 SSCVLMY 620


>gi|269218758|ref|ZP_06162612.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211869|gb|EEZ78209.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 531

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 9/108 (8%)

Query: 549 IRPTGLVDPPVEIRSARTQV--------EDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
           IR     D  V ++S R  V         +V   I  A  +GL I+ T  TKR A  L E
Sbjct: 249 IRAADPSDTGVTVKSVRQVVYRCHALNKSEVLARILQAKGRGLTIVFT-RTKRTAARLAE 307

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
            L ER      +H ++    R + +R  R GK DVLV  ++   G+D+
Sbjct: 308 ELTERGFAAGALHGDLGQGAREQALRAFRNGKVDVLVATDVAARGIDV 355


>gi|228956670|ref|ZP_04118461.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228803008|gb|EEM49835.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 517

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363

Query: 710 KQLE 713
            +++
Sbjct: 364 DRMD 367


>gi|229041132|ref|ZP_04189892.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
 gi|228727214|gb|EEL78411.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
          Length = 525

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363

Query: 710 KQLE 713
            +++
Sbjct: 364 DRMD 367


>gi|225719408|gb|ACO15550.1| Eukaryotic initiation factor 4A-III [Caligus clemensi]
          Length = 403

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH +V   ER +I+++ R
Sbjct: 262 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDVPQKERDDIMKEFR 316

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 317 SGQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 362


>gi|229107908|ref|ZP_04237540.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
 gi|229125742|ref|ZP_04254771.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-Cer4]
 gi|229143032|ref|ZP_04271470.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST24]
 gi|296501059|ref|YP_003662759.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|146291075|sp|Q81IT9|CSHA_BACCR RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|228640440|gb|EEK96832.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST24]
 gi|228657715|gb|EEL13524.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-Cer4]
 gi|228675551|gb|EEL30763.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
 gi|296322111|gb|ADH05039.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 533

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRRE 709
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKM 363

Query: 710 KQLE 713
            +++
Sbjct: 364 DRMD 367


>gi|62327127|ref|YP_223915.1| putative helicase [Lactobacillus phage phiJL-1]
 gi|37930144|gb|AAP74542.1| putative helicase [Lactobacillus phage phiJL-1]
          Length = 467

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 11/134 (8%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L+   G + +L   +   A+       E  +    +  +    ER  II D R GK  VL
Sbjct: 207 LSNANGKQAILYAHSVEYAKKYAVAFEEAGVNAASVDGKTPKAERDRIINDFRSGKLKVL 266

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI---QTIGRAARNVNSKVILYADTI 693
              +L+ EG D+P C +V +         R   SL+   Q   R  R VN K  +  D +
Sbjct: 267 CNNDLISEGFDVPNCEVVIM--------CRPTASLVLYLQQSMRCMRYVNGKQAMIIDHV 318

Query: 694 TKSIQLAIDETTRR 707
              ++  + +  R+
Sbjct: 319 GNYVRFGLPDDDRQ 332


>gi|322373680|ref|ZP_08048216.1| ATP-dependent DNA helicase RecG [Streptococcus sp. C150]
 gi|321278722|gb|EFX55791.1| ATP-dependent DNA helicase RecG [Streptococcus sp. C150]
          Length = 672

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 11/117 (9%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + ++LTE+ +  +  V  MH  +K  E+ +I++D +  K  +LV   ++  G+++P   +
Sbjct: 485 LHQELTEF-FGDSATVALMHGRMKNDEKDQIMQDFKDRKSQILVSTTVIEVGVNVPNATV 543

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA----DTITKSIQLAIDETT 705
           + I+DAD+ G     + L Q  GR  R +  S  +L A    DT  K +Q A+ ETT
Sbjct: 544 MVIMDADRFGL----SQLHQLRGRVGRGDKQSYCVLVANPKNDTGKKRMQ-AMCETT 595


>gi|282909801|ref|ZP_06317610.1| helicase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283959265|ref|ZP_06376706.1| putative helicase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|282326375|gb|EFB56679.1| helicase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283788857|gb|EFC27684.1| putative helicase [Staphylococcus aureus subsp. aureus A017934/97]
          Length = 678

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  LR GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLREGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            EG+DIPE   V +L   +   +      IQ +GR  R  ++K
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549


>gi|145299438|ref|YP_001142279.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852210|gb|ABO90531.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 613

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 11/154 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK  AE+L   L  R      +H ++    R   +  LR G+ D+L+  +++  
Sbjct: 250 VLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVAR 309

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R    + IL+     + +  AI+
Sbjct: 310 GLDVERITHVVNYDIPYDTESYVHR----IGRTGRAGR--KGEAILFVAPRERRMLRAIE 363

Query: 703 ETTRRREKQLEHNKKHNINPQSV---KEKIMEVI 733
             TR+  + ++     +IN   +   KE+I E +
Sbjct: 364 HATRQAIEPMKMPSTEDINQHRMTKFKERIRETM 397


>gi|332995152|gb|AEF05207.1| type III restriction protein res subunit [Alteromonas sp. SN2]
          Length = 1098

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 6/100 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L   ++++ A+ + +Y  E  +    +HS+ + L R E +  L  GK  VL  ++L  EG
Sbjct: 447 LAFCVSRQHADYMAKYFNENGVSAASVHSDSE-LTRTEALEGLSDGKIKVLFSVDLFNEG 505

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +D+P+   V +L   +     SK   +Q +GR  R    K
Sbjct: 506 VDLPQIDTVLLLRPTE-----SKILFLQQMGRGLRRSEGK 540


>gi|326797348|ref|YP_004315168.1| ATP-dependent DNA helicase RecG [Marinomonas mediterranea MMB-1]
 gi|326548112|gb|ADZ93332.1| ATP-dependent DNA helicase RecG [Marinomonas mediterranea MMB-1]
          Length = 693

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 589 VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
            L  + AED    L E+  N++V  +H  +K  E+ +I+   + G+ D+LV   ++  G+
Sbjct: 498 ALQCQAAEDTALLLQEQLTNLKVGLVHGRLKAQEKADIMALFKAGEIDLLVATTVIEVGV 557

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILY 689
           D+P   L+ I + ++ G       L Q  GR  R   +   V+LY
Sbjct: 558 DVPNSSLMVIENPERLGL----AQLHQLRGRVGRGTTASHCVLLY 598



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 6/79 (7%)

Query: 144 QTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTF----TMAKVIEAMQRPAIV 198
           Q  + P+G Q    +++L  + S    ++L+ G  GSGKT     T A V++   + AI 
Sbjct: 265 QLPFSPTGAQSRVFSEVLADMSSGHPMLRLVQGDVGSGKTLVAGMTAAAVVQKGYQVAI- 323

Query: 199 MAPNKILAAQLYSEFKNFF 217
           MAP +ILA Q Y  FKN+F
Sbjct: 324 MAPTEILAEQHYLNFKNWF 342


>gi|322824367|gb|EFZ29795.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 395

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +A       ++   T++  E L + + +    V  MH ++   ER EI+R+ R
Sbjct: 254 DLYDTLTIA-----HAVIFCNTRKKVEQLAKKMRKEKFSVSCMHGDMPQAERDEIMRNFR 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GK  VL+  +L   G+D+ +  LV   D        S+   I  IGR  R
Sbjct: 309 EGKSRVLISTDLWSRGIDVEQVSLVLNYD-----LPFSREQYIHRIGRTGR 354


>gi|282600913|ref|ZP_05980107.2| ATP-dependent DNA helicase RecG [Subdoligranulum variabile DSM
           15176]
 gi|282570824|gb|EFB76359.1| ATP-dependent DNA helicase RecG [Subdoligranulum variabile DSM
           15176]
          Length = 694

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+  +H ++K  E+ E+++  + G+ DVLV   ++  G+D+P    + I +A++ G    
Sbjct: 516 RIGLLHGKMKPKEKDEVMQQFKAGELDVLVSTTVIEVGVDVPNATAMVIENAERFGL--- 572

Query: 668 KTSLIQTIGRAARN-VNSKVILYADTITKSIQ 698
            ++L Q  GR  R   +S  IL +D    S++
Sbjct: 573 -SALHQLRGRVGRGAADSCCILISDNENDSVR 603


>gi|229009737|ref|ZP_04166960.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
           2048]
 gi|229055077|ref|ZP_04195508.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
 gi|228721261|gb|EEL72786.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
 gi|228751532|gb|EEM01335.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
           2048]
          Length = 538

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRR 708
            G+  + + D     +   S +  IGR  R     + +   T  +S QL  I+ TT+R+
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRK 362


>gi|220681310|gb|ACL80031.1| vasa-like protein [Bombyx mori]
          Length = 468

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 17/144 (11%)

Query: 561 IRSARTQVEDVYDEIN-----------LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           +  A T VE ++ E+            +    G RIL+ V TKR A+ +   L E+ +  
Sbjct: 266 VGGASTDVEQIFIEVTKYEKRNSLKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLT 325

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H +    ER E +++ + GK  +LV   +   GLDI    +V   D  K     S  
Sbjct: 326 SSIHGDRMQREREEALQNFKSGKHCILVATAVAARGLDIKNVDIVVNYDLPK-----SID 380

Query: 670 SLIQTIGRAARNVN-SKVILYADT 692
             +  IGR  R  N  K + + D+
Sbjct: 381 EYVHRIGRTGRVGNRGKAVSFYDS 404


>gi|156032684|ref|XP_001585179.1| hypothetical protein SS1G_13747 [Sclerotinia sclerotiorum 1980]
 gi|154699150|gb|EDN98888.1| hypothetical protein SS1G_13747 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1867

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 7/90 (7%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + D R GK + L+  ++  EGLDIP+C LV   D        +    IQ+ GR AR+VNS
Sbjct: 835 MHDFRNGKINCLIATSVAEEGLDIPDCNLVVRFD-----LYSTVIQYIQSRGR-ARHVNS 888

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEH 714
           +     ++  +  +  I E   + EK L+H
Sbjct: 889 RYYHMVESHNEEQRRTIKEVL-KHEKLLKH 917


>gi|89093138|ref|ZP_01166088.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89082434|gb|EAR61656.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 417

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V +KR A ++   LY   I+   +H ++   ER+  + D   G+  +L+  +L  
Sbjct: 247 QLLIFVGSKRTANNIELKLYRSGIQSSTLHGDLTQKERLGALEDFSKGRCKILIATDLAA 306

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DIP   L  +L+ D     R+ +  +   GR AR
Sbjct: 307 RGIDIPS--LPCVLNYD---LPRATSDYVHRAGRTAR 338


>gi|70985190|ref|XP_748101.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus fumigatus Af293]
 gi|66845729|gb|EAL86063.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus fumigatus Af293]
          Length = 505

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 342 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 396

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D   ++E +       I  IGR+ R
Sbjct: 397 QGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENY-------IHRIGRSGR 442


>gi|256077147|ref|XP_002574869.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238660085|emb|CAZ31102.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 401

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +        ++   TKR    LTE + + N  V  MH ++   ER EI++D R
Sbjct: 260 DLYDTLTVTQS-----VIFCNTKRKVAWLTEKMLKNNFTVASMHGDMVQKEREEIMKDFR 314

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  +L   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 315 AGDSRVLITTDLWARGIDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 360


>gi|228477237|ref|ZP_04061875.1| ATP-dependent DNA helicase RecG [Streptococcus salivarius SK126]
 gi|228251256|gb|EEK10427.1| ATP-dependent DNA helicase RecG [Streptococcus salivarius SK126]
          Length = 676

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 11/117 (9%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + ++LT++L + +  V  MH  +K  E+ +I++D +  K  +LV   ++  G+++P   +
Sbjct: 489 LHQELTDFLGD-SATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATV 547

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA----DTITKSIQLAIDETT 705
           + I+DAD+ G     + L Q  GR  R +  S  +L A    DT  K +Q A+ ETT
Sbjct: 548 MVIMDADRFGL----SQLHQLRGRVGRGHKQSYCVLVANPKNDTGKKRMQ-AMCETT 599


>gi|222151982|ref|YP_002561142.1| hypothetical protein MCCL_1739 [Macrococcus caseolyticus JCSC5402]
 gi|222121111|dbj|BAH18446.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 498

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  R   +H ++   +R+E+++  +  + D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALISKGYRAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            G+  + + D    + S T  I   GRA ++
Sbjct: 307 SGVTHVYNFDIPQDVESYTHRIGRTGRAGKH 337


>gi|325283038|ref|YP_004255579.1| ATP-dependent DNA helicase RecG [Deinococcus proteolyticus MRP]
 gi|324314847|gb|ADY25962.1| ATP-dependent DNA helicase RecG [Deinococcus proteolyticus MRP]
          Length = 786

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 7/106 (6%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +AE+L E L E   R+  +H ++   E+ +I+   R   FD+LV   ++  G+D+P   +
Sbjct: 594 LAENLAEMLPE--ARIGLLHGKMTAAEKDDIMASFRRHDFDLLVSTTVIEVGVDVPNATV 651

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQ 698
           + I +A++ G     + L Q  GR  R ++ S  +L A  ++K  +
Sbjct: 652 MVIENAERFGL----SQLHQLRGRVGRGSLQSYCVLIAGEMSKKTE 693


>gi|323349203|gb|EGA83433.1| Irc3p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 570

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           LL  + K   + L +   +  I   Y+ S+ K +ER  II+  + G+ +VL+   +  EG
Sbjct: 163 LLFGVDKAHVQSLHKLFKDNGINTDYVTSDTKQIERDNIIQKFKNGETEVLMNCGIFTEG 222

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D+P    + +    K     S++ LIQ IGR  R  +SK
Sbjct: 223 TDMPNIDCILLCRPTK-----SRSLLIQMIGRGLRLHHSK 257


>gi|330929272|ref|XP_003302577.1| hypothetical protein PTT_14452 [Pyrenophora teres f. teres 0-1]
 gi|311321983|gb|EFQ89342.1| hypothetical protein PTT_14452 [Pyrenophora teres f. teres 0-1]
          Length = 599

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 12/128 (9%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V+ RS    +   +D  NL        L+ V TKRMA+ L+++L  +      +H +   
Sbjct: 440 VDKRSVLLDILHTHDPTNLT-------LVFVETKRMADSLSDFLINQGFPATSIHGDRTQ 492

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER + +   R G+  +LV   +   GLDIP    V   D   +         +  IGR 
Sbjct: 493 REREKALEMFRNGRCPILVATAVAARGLDIPHVKHVVNYDLPTD-----IDDYVHRIGRT 547

Query: 679 ARNVNSKV 686
            R  N+ +
Sbjct: 548 GRAGNTGI 555


>gi|195572988|ref|XP_002104477.1| GD18428 [Drosophila simulans]
 gi|194200404|gb|EDX13980.1| GD18428 [Drosophila simulans]
          Length = 690

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 553 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 607

Query: 683 NSKVILYADTIT----KSIQL 699
              VIL A + T    +S+QL
Sbjct: 608 AYHVILVAPSYTSPTVESVQL 628


>gi|165972365|ref|NP_001107132.1| Fanconi anemia, complementation group M [Danio rerio]
 gi|126843130|gb|ABO27624.1| Fanconi anemia M [Danio rerio]
          Length = 1761

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++E++   R G F+ LV   +  EGLDI E  L+   DA K     S   L+Q +GR  
Sbjct: 483 EQLEVVWRFREGGFNTLVSTCVGEEGLDIGEVDLIVCFDAQK-----SPIRLVQRMGRTG 537

Query: 680 RNVNSKVIL 688
           R    ++++
Sbjct: 538 RQRQGRIVV 546


>gi|7770712|gb|AAF69763.1| similar to RAD25 [Synechocystis sp. PCC 9413]
          Length = 449

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 25/173 (14%)

Query: 574 EINLAAQQGLRILLTVLTKR--------MAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           EI L     LR+L+ +L +          A++ T Y   + + +  +  +    ER EI+
Sbjct: 265 EIALITDGKLRVLINLLGQHYPESTIIFTADNATVYKISKALLIPAITHQTPVKERHEIL 324

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NV 682
              + G +  L+  ++L EG+D+PE  +  +L         S+   IQ +GR  R   N 
Sbjct: 325 TRFKAGDYKTLIASHVLNEGVDVPEARIAIVLSGTG-----SRREYIQRLGRVLRKGQND 379

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
             + ILY + I +     ++E T  R + L+ + +      S+++  +E+I+P
Sbjct: 380 QKQAILY-EVIAED---TVEEGTSARRRGLDRDGEEK---SSIRQ--LELINP 423


>gi|330832312|ref|YP_004401137.1| type III restriction protein res subunit [Streptococcus suis ST3]
 gi|329306535|gb|AEB80951.1| type III restriction protein res subunit [Streptococcus suis ST3]
          Length = 957

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A++L      R +R R +  E    ER  +++DL  G  D ++ +++  EG+DIP    V
Sbjct: 462 AKELEGQFNARGLRTRALSGEHSQKERQRVVQDLENGNLDYILTVDIFNEGIDIPSVNQV 521

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +L        +S    IQ +GR  R  +SK
Sbjct: 522 VMLRN-----TQSSIIFIQQLGRGLRKHDSK 547


>gi|227524339|ref|ZP_03954388.1| ATP-dependent RNA helicase [Lactobacillus hilgardii ATCC 8290]
 gi|227088570|gb|EEI23882.1| ATP-dependent RNA helicase [Lactobacillus hilgardii ATCC 8290]
          Length = 453

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 6/108 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+   T++  E+LTEYL  + ++V  +H  VK  ER +I++ ++   F  +V  +L   
Sbjct: 246 VLIFANTRKRVEELTEYLRGQGLKVAMVHGGVKPRERKQIMKRIKNLDFQFVVATDLAAR 305

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYA 690
           G+DI     V   D   E         I  +GR  RN    + + LY+
Sbjct: 306 GIDIEGVSQVINDDIPTEDL----EFFIHRVGRTGRNGMSGTSITLYS 349


>gi|209558593|ref|YP_002285065.1| Transcription-repair coupling factor [Streptococcus pyogenes NZ131]
 gi|209539794|gb|ACI60370.1| Transcription-repair coupling factor [Streptococcus pyogenes NZ131]
          Length = 1139

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 95/206 (46%), Gaps = 12/206 (5%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           +G++GS K   +A      Q+  +V+   +    +L S+  +      V  F  + D   
Sbjct: 1   MGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFADDVA 58

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
              ++  +   ++K  S  E +  +R+  ++ +L     + +S +  +     V + SQ 
Sbjct: 59  AAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSGLRTLLPNPDVFTKSQ- 110

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            +QL +G++ +   L   L+   Y++    I  G F   GD ++I+    +++ +R+  F
Sbjct: 111 -IQLTVGENYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRLEFF 168

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKI 379
           G+DI+ I +F+P T +    +E I I
Sbjct: 169 GDDIDSIRQFHPETQKSFEQLEGIFI 194


>gi|21232667|ref|NP_638584.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767279|ref|YP_242041.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21114475|gb|AAM42508.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572611|gb|AAY48021.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 713

 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +K  E+ + + D + G+ D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 537 GVRVALVHGRMKPAEKQQAMLDFKQGRTDLLVATTVIEVGVDVPNASLMIIENAERLGL- 595

Query: 666 RSKTSLIQTIGRAARN--VNSKVILYADTIT 694
                L Q  GR  R    +S V+LY   ++
Sbjct: 596 ---AQLHQLRGRVGRGAAASSCVLLYQGPLS 623


>gi|322692486|gb|EFY84394.1| DEAD/DEAH box helicase [Metarhizium acridum CQMa 102]
          Length = 585

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LT    E     R++  +    ER EI+ D + G F VLV   +  EG DIP    + + 
Sbjct: 233 LTRKFREYGYDARFVTGDTPKQERSEILHDFKKGCFPVLVNCGVFTEGTDIPNIDCIVLG 292

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
                   RS+  L+Q IGR  R
Sbjct: 293 RP-----TRSRNLLVQMIGRGMR 310


>gi|317476390|ref|ZP_07935639.1| primosomal protein N [Bacteroides eggerthii 1_2_48FAA]
 gi|316907416|gb|EFV29121.1| primosomal protein N [Bacteroides eggerthii 1_2_48FAA]
          Length = 536

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 8/82 (9%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  G
Sbjct: 331 IIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRAYERAFQLMAQVAG 390

Query: 677 RAAR-NVNSKVILYADTITKSI 697
           RA R N   +V+L   +I  SI
Sbjct: 391 RAGRKNKRGRVVLQTKSIEHSI 412


>gi|315194991|gb|EFU25379.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 953

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  LR GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLREGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            EG+DIPE   V +L   +   +      IQ +GR  R  ++K
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549


>gi|312377148|gb|EFR24056.1| hypothetical protein AND_11649 [Anopheles darlingi]
          Length = 400

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER EI+++ R
Sbjct: 259 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 313

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 314 SGQSRVLITTDVWARGIDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 359


>gi|295838353|ref|ZP_06825286.1| transcription-repair coupling factor [Streptomyces sp. SPB74]
 gi|295826975|gb|EDY42784.2| transcription-repair coupling factor [Streptomyces sp. SPB74]
          Length = 1108

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 103/242 (42%), Gaps = 23/242 (9%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           D PA +A+ +K      + +  +    + + F +A +    +R  + +      A  L +
Sbjct: 15  DDPA-LAEAVKAAGDGHRTRADVVGPPAARPFVVAALAREARRTVLAVTATGREAEDLAA 73

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
             +   P   V  F S+ +    E   PR+DT   + + +     R+ H           
Sbjct: 74  ALRTLIPAEGVVEFPSW-ETLPHERLSPRSDTVGRRLAVLR----RLAHPEADDPEAGPV 128

Query: 272 CIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
            +VV+ +  +      G+G +E      V L+ G S + +E++ +L    Y R ++   R
Sbjct: 129 SVVVAPIRSVLQPQVKGLGDLEP-----VALRQGRSADLQEIVQALAAAAYARVELVEKR 183

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           G F V G  +++FP   E+   RV  +G+++EEI  F      K+ +  +++I  +  + 
Sbjct: 184 GEFAVRGGILDVFPP-TEEHPLRVEFWGDEVEEIRYF------KVADQRSLEIAEHGLWA 236

Query: 387 TP 388
            P
Sbjct: 237 PP 238


>gi|294083797|ref|YP_003550554.1| transcription-repair coupling factor [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663369|gb|ADE38470.1| transcription-repair coupling factor [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 1158

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 4/137 (2%)

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMIVQLKIGDSVEQKELL 309
           + ++I+ +   A+       + IV+++V+        +SY ++  + + +G ++E   L 
Sbjct: 82  VGQRIETLARLASEPAALTANTIVLTTVNAFLQRVPPQSYFAESSLHITVGQTIEPSALA 141

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           + LV   Y R D     G F V G  +++F P H   V  R+  FG+DIE +  F P   
Sbjct: 142 TFLVNNAYLRTDTVRETGEFAVRGGIVDVFPPGHANPV--RLDFFGDDIETMRSFDPSNQ 199

Query: 369 QKIRNVETIKIYANSHY 385
           + I   + + ++  + +
Sbjct: 200 RSIGKADRLTLHPVAEF 216


>gi|28378872|ref|NP_785764.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|300768022|ref|ZP_07077928.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|28271709|emb|CAD64615.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|300494371|gb|EFK29533.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 447

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 7/108 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+   TK   ++LT YL ++ + V  +H +++  ER  ++RD++  K+  +V  +L   
Sbjct: 247 VLVFANTKERVQELTHYLRQQGLTVAMIHGDIQPRERKRVMRDVQQLKYQFVVATDLAAR 306

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYA 690
           G+DI   G+  +++ D    L      I  +GR  RN    + + LY+
Sbjct: 307 GIDIE--GVSHVINDDIPNDLE---FFIHRVGRTGRNGMAGTAITLYS 349


>gi|88856719|ref|ZP_01131374.1| ATP-dependent DNA helicase RecG [marine actinobacterium PHSC20C1]
 gi|88814016|gb|EAR23883.1| ATP-dependent DNA helicase RecG [marine actinobacterium PHSC20C1]
          Length = 724

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 34/56 (60%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           R+  +H ++ + E+ E++R    G  DVLV   ++  G+D+P   ++ +LDAD+ G
Sbjct: 542 RIEALHGKLSSDEKDELMRAFAAGDIDVLVATTVIEVGVDVPNASVMVVLDADRFG 597


>gi|332372808|gb|AEE61546.1| unknown [Dendroctonus ponderosae]
          Length = 423

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++      + ++   T+R  + LTE +++++  V  MH +++  ER  I+R  R
Sbjct: 282 DLYDTLSIT-----QAVIFCNTRRKVDWLTESMHKKDFTVSAMHGDMEQKERDVIMRQFR 336

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  +LL  G+D+ +  LV
Sbjct: 337 TGSSRVLITTDLLARGIDVQQVSLV 361


>gi|329120140|ref|ZP_08248810.1| transcription-repair coupling factor [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327463671|gb|EGF09989.1| transcription-repair coupling factor [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 1290

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 41/210 (19%), Positives = 87/210 (41%), Gaps = 17/210 (8%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++ P+   A +L + ++ F P +    F+  ++    E + P  D   E+ S + + 
Sbjct: 36  PKLILTPDAETALRLQTAWQFFRPEDNA-LFLPDWETLPYERFSPHQDLVSERLSVLWQL 94

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
            + + H+           + V   + +  +            LK G  ++   L  +LV+
Sbjct: 95  KNGLAHA-----------LFVPVSTAMQRLAPAPFLLGRTFWLKTGQRLDIAALRQNLVE 143

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y      +  G F V G  +++FP+   D  +R+ +F ++I+ I  F P + + I  V
Sbjct: 144 AGYSAVSNVVAGGEFAVRGGIVDLFPTG-SDTPYRIDLFDDEIDSIKTFDPDSQRTIAPV 202

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
             I++     +    PT + A K  +   +
Sbjct: 203 SEIRLLPAHEF----PTDDAAQKIFRSRFR 228


>gi|282906829|ref|ZP_06314677.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282329728|gb|EFB59249.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus Btn1260]
          Length = 953

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  LR GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLREGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            EG+DIPE   V +L   +   +      IQ +GR  R  ++K
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549


>gi|187928984|ref|YP_001899471.1| transcription-repair coupling factor [Ralstonia pickettii 12J]
 gi|187725874|gb|ACD27039.1| transcription-repair coupling factor [Ralstonia pickettii 12J]
          Length = 1143

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 41/218 (18%), Positives = 93/218 (42%), Gaps = 24/218 (11%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMA---PNKILAAQLYSEFKNFFPHNAVEYFVSY--- 228
           G+ G+     +A+ +E  +  A ++A    N + A +L  E + F P   V+    +   
Sbjct: 22  GLQGAADALLLARYLEQHRAAAPMLAVVCANAVDAQRLAEELRWFAPQARVKLLPDWETL 81

Query: 229 -YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            YD + P       D   E+ +++++    +++ A        D ++V + + +  +   
Sbjct: 82  PYDNFSPH-----QDLISERLATLHD----LQNGAC-------DILLVPASTALQRVAPP 125

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
              +      K G+ +++  L +      Y+     +  G + V G  I++FP     + 
Sbjct: 126 SFLAAYTFFFKKGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMG-SPLP 184

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           +R+ +FG++IE I  F P T + +  V  +++     +
Sbjct: 185 YRLDLFGDEIETIRSFDPDTQRSLYPVNEVRLLPGREF 222


>gi|2370593|emb|CAA73168.1| translation initiation factor eIF4A II [Xenopus laevis]
          Length = 413

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 288 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 347

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        ++ + I  IGR  R
Sbjct: 348 VSLVINYD-----LPTNRENYIHRIGRGGR 372


>gi|330798142|ref|XP_003287114.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
 gi|325082892|gb|EGC36360.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
          Length = 2341

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +II+  R GK  ++V  N+L EG+DI EC +V   D+     + S  SL+Q  GR AR+ 
Sbjct: 678 KIIKKFRDGKCKLIVSTNVLEEGIDIKECNMVICYDS-----VLSLKSLVQRRGR-ARSE 731

Query: 683 NSKVILYADT 692
           NS+ I+   T
Sbjct: 732 NSQFIVIHHT 741


>gi|282921071|ref|ZP_06328789.1| helicase [Staphylococcus aureus subsp. aureus C427]
 gi|282315486|gb|EFB45870.1| helicase [Staphylococcus aureus subsp. aureus C427]
          Length = 953

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  LR GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLREGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            EG+DIPE   V +L   +   +      IQ +GR  R  ++K
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549


>gi|297589433|ref|ZP_06948074.1| helicase [Staphylococcus aureus subsp. aureus MN8]
 gi|297577944|gb|EFH96657.1| helicase [Staphylococcus aureus subsp. aureus MN8]
          Length = 953

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  LR GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLREGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            EG+DIPE   V +L   +   +      IQ +GR  R  ++K
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549


>gi|295660379|ref|XP_002790746.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226281299|gb|EEH36865.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 408

 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 357


>gi|49484698|ref|YP_041922.1| helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257423968|ref|ZP_05600397.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257426652|ref|ZP_05603054.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257429286|ref|ZP_05605673.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257431932|ref|ZP_05608295.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257434893|ref|ZP_05610944.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus M876]
 gi|282902402|ref|ZP_06310295.1| putative helicase [Staphylococcus aureus subsp. aureus C160]
 gi|282912051|ref|ZP_06319847.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282915347|ref|ZP_06323124.1| putative helicase [Staphylococcus aureus subsp. aureus M899]
 gi|282925977|ref|ZP_06333625.1| helicase [Staphylococcus aureus subsp. aureus C101]
 gi|293497742|ref|ZP_06665596.1| helicase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511324|ref|ZP_06670020.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus M809]
 gi|293549930|ref|ZP_06672602.1| putative helicase [Staphylococcus aureus subsp. aureus M1015]
 gi|295429074|ref|ZP_06821696.1| helicase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|49242827|emb|CAG41554.1| putative helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257272986|gb|EEV05088.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257276283|gb|EEV07734.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257279767|gb|EEV10354.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257282811|gb|EEV12943.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257285489|gb|EEV15605.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus M876]
 gi|282312806|gb|EFB43210.1| helicase [Staphylococcus aureus subsp. aureus C101]
 gi|282321068|gb|EFB51402.1| putative helicase [Staphylococcus aureus subsp. aureus M899]
 gi|282323747|gb|EFB54063.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282596861|gb|EFC01820.1| putative helicase [Staphylococcus aureus subsp. aureus C160]
 gi|290918977|gb|EFD96053.1| putative helicase [Staphylococcus aureus subsp. aureus M1015]
 gi|291096673|gb|EFE26931.1| helicase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465950|gb|EFF08480.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus M809]
 gi|295126833|gb|EFG56477.1| helicase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|312437093|gb|ADQ76164.1| helicase [Staphylococcus aureus subsp. aureus TCH60]
          Length = 953

 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  LR GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLREGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            EG+DIPE   V +L   +   +      IQ +GR  R  ++K
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549


>gi|289168885|ref|YP_003447154.1| helicase ComFA [Streptococcus mitis B6]
 gi|288908452|emb|CBJ23294.1| helicase ComFA [Streptococcus mitis B6]
          Length = 432

 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 6/114 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           +  E L E L E+    +       T +R+E ++  R GK  +L+   +L  G+  P C 
Sbjct: 312 KKGEQLKEILQEQFPHEKIGFVSSITEDRLEQVQAFRDGKLTILISTTILERGVTFP-CV 370

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVN---SKVILYADTITKSIQLAIDE 703
            V +++A+   F  +K+SLIQ  GR  R+++     ++ + D +  SI+ AI E
Sbjct: 371 DVFVVEANHRLF--TKSSLIQIGGRVGRSMDRPTGDLLFFHDGLNASIKKAIKE 422


>gi|260790063|ref|XP_002590063.1| hypothetical protein BRAFLDRAFT_123431 [Branchiostoma floridae]
 gi|229275251|gb|EEN46074.1| hypothetical protein BRAFLDRAFT_123431 [Branchiostoma floridae]
          Length = 403

 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 262 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFR 316

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+P+  L+   D        ++   I  IGR+ R
Sbjct: 317 SGASRVLITTDVWARGIDVPQVSLIINYDLPN-----NRELYIHRIGRSGR 362


>gi|157737636|ref|YP_001490319.1| primosome assembly protein PriA [Arcobacter butzleri RM4018]
 gi|157699490|gb|ABV67650.1| primosomal protein N' [Arcobacter butzleri RM4018]
          Length = 615

 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 9/119 (7%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE-IIRDLRLGKFDVL 636
           + + G+   L V T ++ E+L     ++NI+ R+   E+KT  +++ I+ D   GK D+L
Sbjct: 379 SCKTGIIHNLRVGTAQIEEELKAIFPQKNIK-RFDRDEIKTENQLKTILNDFNSGKIDIL 437

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTS-------LIQTIGRAARNVNSKVIL 688
           VG  +L +G D     L  +L  D    + S  +       LIQ  GR+ R+   +VI+
Sbjct: 438 VGTQMLSKGHDYHNVKLAVVLGIDSVLNMNSYKAREKALSLLIQISGRSGRSGFGEVII 496


>gi|223932579|ref|ZP_03624579.1| type III restriction protein res subunit [Streptococcus suis
           89/1591]
 gi|223898689|gb|EEF65050.1| type III restriction protein res subunit [Streptococcus suis
           89/1591]
          Length = 957

 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A++L      R +R R +  E    ER  +++DL  G  D ++ +++  EG+DIP    V
Sbjct: 462 AKELEGQFNARGLRTRALSGEHSQKERQRVVQDLENGNLDYILTVDIFNEGIDIPSVNQV 521

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +L        +S    IQ +GR  R  +SK
Sbjct: 522 VMLRN-----TQSSIIFIQQLGRGLRKHDSK 547


>gi|71995514|ref|NP_001021793.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|51988117|gb|AAU20831.1| Vasa- and belle-like helicase protein 1, isoform c, partially
           confirmed by transcript evidence [Caenorhabditis
           elegans]
          Length = 660

 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 5/99 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TKR A +L  +L  + IR   +H ++K +ER   +   R G+  +LV   +   
Sbjct: 401 VLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAAR 460

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           GLDIP   +  +++ D  G        +  IGR  R  N
Sbjct: 461 GLDIPN--VRHVINYDLPG---DSDEYVHRIGRTGRCGN 494


>gi|71987143|ref|NP_001022623.1| INitiation Factor family member (inf-1) [Caenorhabditis elegans]
 gi|124217|sp|P27639|IF4A_CAEEL RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Initiation factor 1
 gi|6700|emb|CAA78102.1| unnamed protein product [Caenorhabditis elegans]
 gi|532818|gb|AAA21170.1| Initiation factor protein 1, isoform a, confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 402

 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y+ +N+      + ++   T+R  + LTE + E    V  +H ++   ER  I+R+ R
Sbjct: 261 DLYNVVNVT-----QAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFR 315

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++L  G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 316 SGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 361


>gi|71418343|ref|XP_810822.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70875414|gb|EAN88971.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 395

 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +A       ++   T++  E L + + +    V  MH ++   ER EI+R+ R
Sbjct: 254 DLYDTLTIA-----HAVIFCNTRKKVEQLAKKMRKEKFSVSCMHGDMPQAERDEIMRNFR 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GK  VL+  +L   G+D+ +  LV   D        S+   I  IGR  R
Sbjct: 309 EGKSRVLISTDLWSRGIDVEQVSLVLNYD-----LPFSREQYIHRIGRTGR 354


>gi|332028827|gb|EGI68856.1| ATP-dependent RNA helicase bel [Acromyrmex echinatior]
          Length = 704

 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L EYL      V  +H +    ER E +R  R GK  +LV   +   G
Sbjct: 480 LVFVETKKGADMLEEYLASMGYPVTSIHGDRTQREREEALRRFRAGKAPILVATAVAARG 539

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D   D E ++    +T  +  +G A    N K
Sbjct: 540 LDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNLGLATSFFNHK 583


>gi|327294865|ref|XP_003232128.1| eukaryotic initiation factor 4A-12 [Trichophyton rubrum CBS 118892]
 gi|326466073|gb|EGD91526.1| eukaryotic initiation factor 4A-12 [Trichophyton rubrum CBS 118892]
          Length = 399

 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 357


>gi|71030480|ref|XP_764882.1| RNA helicase-1 [Theileria parva strain Muguga]
 gi|68351838|gb|EAN32599.1| RNA helicase-1, putative [Theileria parva]
          Length = 598

 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   E + EYL  + +    +H  +   ERIE I D +  K DVL+G ++  +
Sbjct: 456 VLIFCENKADVEIINEYLILKGVEASAIHGGLSQEERIESISDFKNHKKDVLIGTDIASK 515

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           GLD P    V   D       R   + +  IGR  R
Sbjct: 516 GLDFPSIQHVINFD-----LPRDMENYVHRIGRTGR 546


>gi|46124853|ref|XP_386980.1| hypothetical protein FG06804.1 [Gibberella zeae PH-1]
 gi|91206556|sp|Q4I7K4|DED1_GIBZE RecName: Full=ATP-dependent RNA helicase DED1
          Length = 675

 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L  +N     +H +    ER   +   R G+  +LV   +   G
Sbjct: 449 LIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEFFRNGRCPILVATAVAARG 508

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 509 LDIPHVTHVINYDLPTD-----VDDYVHRIGRTGRAGNTGI 544


>gi|71898961|ref|ZP_00681127.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Ann-1]
 gi|71731207|gb|EAO33272.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Ann-1]
          Length = 718

 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +K  E+   +R  +  + DVLV   ++  G+D+P   L+ I +A++ G  
Sbjct: 542 GVRVGLVHGRMKAAEKQRTMRAFKCNEIDVLVATTVIEVGVDVPNASLMIIENAERLGL- 600

Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689
                L Q  GR  R   V+S V+LY
Sbjct: 601 ---AQLHQLRGRVGRGSVVSSCVLLY 623


>gi|289617759|emb|CBI61482.1| unnamed protein product [Sordaria macrospora]
          Length = 648

 Score = 45.1 bits (105), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L    G   L+ V TKRMA+ L+++L  +N     +H +    ER   +   R G+  +L
Sbjct: 473 LHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPIL 532

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 533 VATAVAARGLDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 577


>gi|227494754|ref|ZP_03925070.1| possible transcription-repair coupling factor [Actinomyces
           coleocanis DSM 15436]
 gi|226831754|gb|EEH64137.1| possible transcription-repair coupling factor [Actinomyces
           coleocanis DSM 15436]
          Length = 1199

 Score = 45.1 bits (105), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
            I G+  +E  S     L++G  V+   L + LV   Y R D+   RG   V G  I++F
Sbjct: 138 IIGGLADIEPIS-----LRLGSVVDLPSLTAQLVDYGYARVDVVSARGEIAVRGGIIDVF 192

Query: 340 PSHLEDVAWRVSMFGNDIEEISEF 363
           P   E    RV +FGN++++I  F
Sbjct: 193 PP-TESHPVRVELFGNEVDDIRYF 215


>gi|198470572|ref|XP_001355346.2| GA10556 [Drosophila pseudoobscura pseudoobscura]
 gi|198145515|gb|EAL32403.2| GA10556 [Drosophila pseudoobscura pseudoobscura]
          Length = 939

 Score = 45.1 bits (105), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           N +A  G +I++ V TK   ED+ + +         +H +    ER  +++D R GK ++
Sbjct: 486 NNSANNGNKIIIFVETKIKVEDILQIIRTEGYIATSIHGDKTQNERDSVLKDFRNGKSNI 545

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           L+  ++   GLD+ +   V   D     +  S  + +  IGR  R
Sbjct: 546 LIATDVASRGLDVEDLQYVINYD-----YPNSSENYVHRIGRTGR 585


>gi|188990343|ref|YP_001902353.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732103|emb|CAP50295.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris]
          Length = 713

 Score = 45.1 bits (105), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +K  E+ + + D + G+ D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 537 GVRVALVHGRMKPAEKQQAMLDFKQGRTDLLVATTVIEVGVDVPNASLMIIENAERLGL- 595

Query: 666 RSKTSLIQTIGRAARN--VNSKVILYADTIT 694
                L Q  GR  R    +S V+LY   ++
Sbjct: 596 ---AQLHQLRGRVGRGAAASSCVLLYQGPLS 623


>gi|157106196|ref|XP_001649212.1| hypothetical protein AaeL_AAEL004472 [Aedes aegypti]
 gi|108879906|gb|EAT44131.1| hypothetical protein AaeL_AAEL004472 [Aedes aegypti]
          Length = 244

 Score = 45.1 bits (105), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 559 VEIRSARTQVEDVYDEI---NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           V+    R+ + D+   I   N   ++    L+ V TK+ A+ L E+LY  N  V  +H +
Sbjct: 15  VDENDKRSHLLDLLSNIKAQNEGDEKDCLTLIFVETKKSADSLEEFLYHYNHPVTSIHGD 74

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSL 671
               ER + ++  R G+  VLV   +   GLDIP    V   D  A+ E ++    +T  
Sbjct: 75  RTQKEREDALKCFRSGRCPVLVATAVAARGLDIPNVKHVINFDLPAEIEEYVHRIGRTGR 134

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQ 698
           +  +G A    N K    A+ + + +Q
Sbjct: 135 MGNLGIATSFFNDKNRNVANGLVRLLQ 161


>gi|323450835|gb|EGB06714.1| hypothetical protein AURANDRAFT_28650 [Aureococcus anophagefferens]
          Length = 482

 Score = 45.1 bits (105), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 23/183 (12%)

Query: 522 RPTTIVVSATPGSW------------ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           RP T++ SAT  SW            EL    G   +Q    T +    V +        
Sbjct: 289 RPQTLLFSATTPSWVKKLTSKYLEDPELVDVVGDARQQAA--TTVTHKAVLVPRGPDARA 346

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + ++I  AAQ G R+++   TK+  ++L      + +  + +H ++   +R   +   R
Sbjct: 347 SLLEDIIAAAQGGGRVIVFTSTKKECDELAGGPAFQRLAAQVLHGDIGQAQRETTLAQFR 406

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFL-RSKTSLIQTIGRAARNVNSKV 686
            G F VLV  ++   G+D+    LV       D EG++ RS  +     GRA R+  + V
Sbjct: 407 RGAFTVLVATDVAARGIDVKGVDLVVQYRTPRDAEGYVHRSGRT-----GRAGRD-GTAV 460

Query: 687 ILY 689
           +LY
Sbjct: 461 VLY 463


>gi|302890734|ref|XP_003044250.1| hypothetical protein NECHADRAFT_64925 [Nectria haematococca mpVI
            77-13-4]
 gi|256725172|gb|EEU38537.1| hypothetical protein NECHADRAFT_64925 [Nectria haematococca mpVI
            77-13-4]
          Length = 1302

 Score = 45.1 bits (105), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 6/105 (5%)

Query: 586  LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
            ++  ++++ AE + E L ++ I  R+ H+ V   E++E+    + G+  V+V       G
Sbjct: 936  IVYTISRKNAEKVAESLTKQGIMARHYHAHVDPREKVEVQDGWQRGQVKVVVATVAFGMG 995

Query: 646  LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILY 689
            +D P+   V        G  +S     Q  GRA R+ N S  IL+
Sbjct: 996  IDKPDVRFVM-----HHGLPKSLEGYYQETGRAGRDGNPSDCILF 1035


>gi|171693103|ref|XP_001911476.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946500|emb|CAP73301.1| unnamed protein product [Podospora anserina S mat+]
          Length = 488

 Score = 45.1 bits (105), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R
Sbjct: 346 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 400

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 401 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 446


>gi|148543598|ref|YP_001270968.1| helicase domain-containing protein [Lactobacillus reuteri DSM
           20016]
 gi|184153006|ref|YP_001841347.1| competence protein [Lactobacillus reuteri JCM 1112]
 gi|227363440|ref|ZP_03847564.1| ATP-dependent DNA helicase/translocase [Lactobacillus reuteri
           MM2-3]
 gi|325681951|ref|ZP_08161469.1| competence protein FA [Lactobacillus reuteri MM4-1A]
 gi|148530632|gb|ABQ82631.1| helicase domain protein [Lactobacillus reuteri DSM 20016]
 gi|183224350|dbj|BAG24867.1| competence protein [Lactobacillus reuteri JCM 1112]
 gi|227071540|gb|EEI09839.1| ATP-dependent DNA helicase/translocase [Lactobacillus reuteri
           MM2-3]
 gi|324978595|gb|EGC15544.1| competence protein FA [Lactobacillus reuteri MM4-1A]
          Length = 443

 Score = 45.1 bits (105), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 18/195 (9%)

Query: 525 TIVVSATPGSWELEQCQG--IIVEQI-IRPTGLVDPPVEIRSA---RTQVE------DVY 572
            + ++ATPG   L + +   ++V  + +R  G + P +++R A   R ++E       V 
Sbjct: 235 CLYLTATPGDALLREIKSKRLVVNYLPLRYHGHLLPQIKVRLAFGWRRRLERQQLPPQVI 294

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            ++    ++G R LL +        +   L       R+        ER+E ++ +R G 
Sbjct: 295 QQLQETLREGHRFLLFIPHIADLALVEAALRHSFATFRFATVHASDPERLEKVQKMRDGD 354

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NVNSKVILY 689
           +D LV  ++L  G+  PE   V +L AD   F  S ++L+Q  GRA R       +V+ +
Sbjct: 355 YDFLVTTSILERGVTFPEID-VYVLGADDPVF--SSSALVQIAGRAGRAQSRPTGRVVFW 411

Query: 690 ADTITKSIQLAIDET 704
            +   + +  AI + 
Sbjct: 412 INCNCRQVNQAISQV 426


>gi|157105113|ref|XP_001648723.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108869079|gb|EAT33304.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 400

 Score = 45.1 bits (105), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER EI+++ R
Sbjct: 259 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 313

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 314 SGQSRVLITTDVWARGIDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 359


>gi|50305859|ref|XP_452890.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660559|sp|Q6CT49|PRP28_KLULA RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|49642023|emb|CAH01741.1| KLLA0C15433p [Kluyveromyces lactis]
          Length = 539

 Score = 45.1 bits (105), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ +  KR A+ L + L E   R   +H      +R   +  LR GK D+L+  ++   
Sbjct: 391 IIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGR 450

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+DIP   LV  L      F +S  S +  +GR  R
Sbjct: 451 GIDIPNVSLVVNLQ-----FPKSFDSFVHRVGRTGR 481


>gi|53803678|ref|YP_114457.1| ATP-dependent DNA helicase RecG [Methylococcus capsulatus str.
           Bath]
 gi|53757439|gb|AAU91730.1| ATP-dependent DNA helicase RecG [Methylococcus capsulatus str.
           Bath]
          Length = 691

 Score = 45.1 bits (105), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+R +H  +   E+  ++R+ + G+ D+LV   ++  G+D+P  GL+ I + ++ G  
Sbjct: 515 GLRIRLLHGRMSAAEKDGVMREFKAGESDILVATTVIEVGVDVPNAGLMIIENPERLGL- 573

Query: 666 RSKTSLIQTIGRAARNVNSK--VILY 689
                L Q  GR  R       ++LY
Sbjct: 574 ---AQLHQLRGRVGRGPGDAYCILLY 596


>gi|294626007|ref|ZP_06704617.1| ATP-dependent DNA helicase Lhr [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599677|gb|EFF43804.1| ATP-dependent DNA helicase Lhr [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1464

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 10/157 (6%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615
           P+ +  +  Q   VY ++   AQQ    L+ V T+RMAE    +L +     RV   H  
Sbjct: 252 PLSVVMSNDQWLQVYADVAAFAQQHRTTLVFVNTRRMAERAARHLGDLLGKQRVSAHHGS 311

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R+   + L+ G   VLV    L  GLDI +  LV  L     G  RS  + +Q  
Sbjct: 312 LSRETRLLAEQRLKAGDLTVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRA 366

Query: 676 GRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709
           GR+   V    K  L+  T  + ++  A+ ++ RR E
Sbjct: 367 GRSGHKVGGTPKARLFPQTRDELVECAALLDSIRRGE 403


>gi|289665648|ref|ZP_06487229.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 1454

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 10/157 (6%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615
           P+ +  +  Q   VY ++   AQQ    L+ V T+RMAE    +L +     RV   H  
Sbjct: 242 PLSVVMSNDQWLQVYADVAALAQQHRTTLVFVNTRRMAERAARHLGDLLGKQRVAAHHGS 301

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R+   + L+ G   VLV    L  GLDI +  LV  L     G  RS  + +Q  
Sbjct: 302 LSRETRLLAEQRLKAGDLTVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRA 356

Query: 676 GRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709
           GR+   V    K  L+  T  + ++  A+ ++ RR E
Sbjct: 357 GRSGHKVGGTPKARLFPQTRDELVECAALLDSIRRGE 393


>gi|261378249|ref|ZP_05982822.1| ATP-dependent DNA helicase RecG [Neisseria cinerea ATCC 14685]
 gi|269145330|gb|EEZ71748.1| ATP-dependent DNA helicase RecG [Neisseria cinerea ATCC 14685]
          Length = 680

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E L   L E NI +  +H  +K  E+ E++     G+ +VLV   ++  G+D+P   L+ 
Sbjct: 496 EQLQAALPELNIGL--VHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMV 553

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I  A++ G       L Q  GR  R       V+L+A+ +++
Sbjct: 554 IEHAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPLSE 591


>gi|195146268|ref|XP_002014109.1| GL24500 [Drosophila persimilis]
 gi|194103052|gb|EDW25095.1| GL24500 [Drosophila persimilis]
          Length = 799

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 9/103 (8%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+LY+ +  V  +H +    ER E +R  R G   +LV   +   G
Sbjct: 558 LIFVETKKGADSLEEFLYQCSHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 617

Query: 646 LDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D  +D E +       +  IGR  R  N  V
Sbjct: 618 LDIPHVKHVINFDLPSDVEEY-------VHRIGRTGRMGNLGV 653


>gi|152993618|ref|YP_001359339.1| transcription-repair coupling factor [Sulfurovum sp. NBC37-1]
 gi|151425479|dbj|BAF72982.1| transcription-repair coupling factor [Sulfurovum sp. NBC37-1]
          Length = 994

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L+ GD+V+  EL  +L +  Y   DI   RG     GD I+IFP   E   +R+S+F ++
Sbjct: 104 LEFGDTVDLNELKDTLYQWGYHFTDIAASRGEVSFRGDIIDIFPIDAEK-PYRISLFDDE 162

Query: 357 IEEISEF 363
           IE I  +
Sbjct: 163 IESIQHY 169


>gi|154299943|ref|XP_001550389.1| hypothetical protein BC1G_10862 [Botryotinia fuckeliana B05.10]
 gi|160380638|sp|A6SEH9|DED1_BOTFB RecName: Full=ATP-dependent RNA helicase ded1
 gi|150857142|gb|EDN32334.1| hypothetical protein BC1G_10862 [Botryotinia fuckeliana B05.10]
          Length = 683

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L  +N     +H +    ER   +   R G+  +LV   +   G
Sbjct: 449 LIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARG 508

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 509 LDIPNVKHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 544


>gi|19482136|gb|AAL89410.1|AF461759_1 vasa-like protein [Danio rerio]
          Length = 715

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A    R ++ V TKR A+ +  +L +  I    +H + +  ER + + D RLG+  VL
Sbjct: 523 LRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGQCPVL 582

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           V  ++   GLDI +   V   D        S    +  IGR  R  N+
Sbjct: 583 VATSVAARGLDIEQVQHVVNFD-----MPSSIDEYVHRIGRTGRCGNT 625


>gi|28199580|ref|NP_779894.1| ATP-dependent DNA helicase [Xylella fastidiosa Temecula1]
 gi|182682315|ref|YP_001830475.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa M23]
 gi|28057695|gb|AAO29543.1| ATP-dependent DNA helicase [Xylella fastidiosa Temecula1]
 gi|182632425|gb|ACB93201.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa M23]
 gi|307578592|gb|ADN62561.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 718

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +K  E+   +R  +  + DVLV   ++  G+D+P   L+ I +A++ G  
Sbjct: 542 GVRVGLVHGRMKAAEKQRTMRAFKCNEIDVLVATTVIEVGVDVPNASLMIIENAERLGL- 600

Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689
                L Q  GR  R   V+S V+LY
Sbjct: 601 ---AQLHQLRGRVGRGSVVSSCVLLY 623


>gi|74835178|dbj|BAE44472.1| Vasa [Botryllus primigenus]
          Length = 687

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TKR A+ L  +L +  +    +H + +  ER   + D + GK  +L+  ++  
Sbjct: 487 RTLVFVDTKRNADFLATFLSQEGLPTTSIHGDRQQREREIALTDFKKGKCPILIATSVAA 546

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYAD 691
            GLDIP+   V   D   E         +  IGR  R  N+ S    Y+D
Sbjct: 547 RGLDIPKVEHVINYDLPSE-----IDEYVHRIGRTGRCGNLGSATSFYSD 591


>gi|2992158|dbj|BAA25324.1| Moc2 RNA helicase [Schizosaccharomyces pombe]
          Length = 636

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ LT+YL   N     +H +    ER   +   R G+  ++V   +   G
Sbjct: 434 LIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRG 493

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           LDIP    V   D   +         +  IGR  R  N+
Sbjct: 494 LDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNT 527


>gi|319950872|ref|ZP_08024752.1| type III restriction enzyme, res subunit [Dietzia cinnamea P4]
 gi|319435464|gb|EFV90704.1| type III restriction enzyme, res subunit [Dietzia cinnamea P4]
          Length = 486

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           + +R L   +T   +E + ++  +R I    + ++    +R   I DLR G+ + +  ++
Sbjct: 134 RAMRALGFCVTIEHSEYMAKWFTDRGIPAISISAKTAREDRERGISDLRAGRINCIFTVD 193

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +  EG+DIPE  +V +L   +     S T  IQ +GR  R   +K +L
Sbjct: 194 VFNEGVDIPEVDVVLMLRPTQ-----SSTVYIQQLGRGLRRSPAKSVL 236


>gi|256273404|gb|EEU08340.1| Dbp5p [Saccharomyces cerevisiae JAY291]
          Length = 449

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L      V  +H +++T ER  +I D R G+  VL+  N+L  G
Sbjct: 301 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 360

Query: 646 LDIPECGLVAILD----ADKEGFLRSKTSLIQTIGRAAR 680
           +DIP   +V   D    A+ +       + I  IGR  R
Sbjct: 361 IDIPTVSMVVNYDLPTLANGQA---DPATYIHRIGRTGR 396


>gi|296817029|ref|XP_002848851.1| eukaryotic initiation factor 4A-12 [Arthroderma otae CBS 113480]
 gi|302506162|ref|XP_003015038.1| hypothetical protein ARB_06798 [Arthroderma benhamiae CBS 112371]
 gi|238839304|gb|EEQ28966.1| eukaryotic initiation factor 4A-12 [Arthroderma otae CBS 113480]
 gi|291178609|gb|EFE34398.1| hypothetical protein ARB_06798 [Arthroderma benhamiae CBS 112371]
 gi|326469057|gb|EGD93066.1| eukaryotic initiation factor 4A-12 [Trichophyton tonsurans CBS
           112818]
 gi|326480615|gb|EGE04625.1| eukaryotic initiation factor 4A-12 [Trichophyton equinum CBS
           127.97]
          Length = 399

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 357


>gi|229824032|ref|ZP_04450101.1| hypothetical protein GCWU000282_01336 [Catonella morbi ATCC 51271]
 gi|229786386|gb|EEP22500.1| hypothetical protein GCWU000282_01336 [Catonella morbi ATCC 51271]
          Length = 447

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 7/111 (6%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           VYD + +        L+   TK+ A +LT+ L ER ++V  +H ++   ER  ++R ++ 
Sbjct: 236 VYDLLTMG--HPFLALVFCNTKKYAAELTQCLKERGLKVASIHGDLTPRERKRVMRQIKD 293

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            ++  +V  +L   G+DIP   +V   +  KE         +  +GR  RN
Sbjct: 294 LEYQYVVASDLAARGIDIPGISMVINTELPKE-----LEFFVHRVGRTGRN 339


>gi|238814324|ref|NP_001154925.1| endoribonuclease Dicer [Danio rerio]
 gi|229485378|sp|Q6TV19|DICER_DANRE RecName: Full=Endoribonuclease Dicer
          Length = 1865

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           EV+  ++ E++R  R  + ++L+  +++ EG+DIP+C LV   D   E       S +Q+
Sbjct: 481 EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE-----YRSYVQS 535

Query: 675 IGRAARNVNSKVILYADTITKSIQ 698
            GRA   V++ ++L     TK+ Q
Sbjct: 536 KGRARAPVSNYIMLADSERTKTFQ 559


>gi|256851320|ref|ZP_05556709.1| primosomal protein N [Lactobacillus jensenii 27-2-CHN]
 gi|260660744|ref|ZP_05861659.1| primosomal protein N [Lactobacillus jensenii 115-3-CHN]
 gi|282933235|ref|ZP_06338622.1| primosomal protein N' [Lactobacillus jensenii 208-1]
 gi|297206190|ref|ZP_06923585.1| DNA replication factor Y [Lactobacillus jensenii JV-V16]
 gi|256616382|gb|EEU21570.1| primosomal protein N [Lactobacillus jensenii 27-2-CHN]
 gi|260548466|gb|EEX24441.1| primosomal protein N [Lactobacillus jensenii 115-3-CHN]
 gi|281302739|gb|EFA94954.1| primosomal protein N' [Lactobacillus jensenii 208-1]
 gi|297149316|gb|EFH29614.1| DNA replication factor Y [Lactobacillus jensenii JV-V16]
          Length = 797

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 15/114 (13%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINL 641
            L   T+++ E+L+E L      VR +  +V T  R     EI+     G+ D+L+G  +
Sbjct: 553 FLGTGTQKVEEELSELL----PGVRILRMDVDTTRRKGSYKEILDKFGAGEADILLGTQM 608

Query: 642 LREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARNVNSKVIL 688
           + +GLD P   LV +++AD   +L       ++   L Q  GRA R   S  +L
Sbjct: 609 IAKGLDFPNVTLVGVINADTALYLPDYNASEKTFELLTQVAGRAGRAEKSGQVL 662


>gi|261363938|ref|ZP_05976821.1| ATP-dependent DNA helicase RecG [Neisseria mucosa ATCC 25996]
 gi|288567957|gb|EFC89517.1| ATP-dependent DNA helicase RecG [Neisseria mucosa ATCC 25996]
          Length = 680

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E L   L E NI +  +H  +K  E+ E++     G+ +VLV   ++  G+D+P   L+ 
Sbjct: 496 EQLQAALPELNIGL--VHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMV 553

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I  A++ G       L Q  GR  R       V+L+A+ +++
Sbjct: 554 IEHAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPLSE 591


>gi|242791510|ref|XP_002481772.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218718360|gb|EED17780.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 387

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 245 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 299

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 300 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 345


>gi|212712824|ref|ZP_03320952.1| hypothetical protein PROVALCAL_03921 [Providencia alcalifaciens DSM
           30120]
 gi|212684516|gb|EEB44044.1| hypothetical protein PROVALCAL_03921 [Providencia alcalifaciens DSM
           30120]
          Length = 1148

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 55/302 (18%), Positives = 123/302 (40%), Gaps = 35/302 (11%)

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
           V+ L  + G+      A++IE  Q P +++  +   A +++ E + F      +Y +   
Sbjct: 16  VRHLGCLIGAAGPLECAEMIERHQGPVVIVTRDMQNALRVHDELQQF-----TQYPIETL 70

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
             ++   Y    D +   +  I+ ++  +    T     +   +++   + +  +  V+ 
Sbjct: 71  SDWETLPY----DNFSPHQEIISHRLSTLYRLPTL----QKGALILPVNTLMQKVCPVDF 122

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
            +   + +  GD + +  L   L K  Y+  +  +  G + + G  +++FP    D  +R
Sbjct: 123 LAGHALVMAKGDKLSRDNLREELDKAGYRHVEQVLEHGEYAIRGALLDLFPMG-SDFPFR 181

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           +  F ++I+ +  F   T + +  V  I +     +    PT   A++  + + + R   
Sbjct: 182 IDFFDDEIDSLRTFDVDTQRTLEEVNAINLLPAHEF----PTDKDAIERFRSQWRERF-- 235

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E +R       D E +    S Q++ +   Y       EP P+LFEY+P ++
Sbjct: 236 --------EVRR-------DPEHIYQQVSKQTLPSGIEYWQPLFFAEPLPSLFEYLPANT 280

Query: 470 LL 471
           L 
Sbjct: 281 LF 282


>gi|159125976|gb|EDP51092.1| inositol 5-phosphatase, putative [Aspergillus fumigatus A1163]
          Length = 429

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 266 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 320

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R
Sbjct: 321 QGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGR 366


>gi|118602982|ref|YP_904197.1| transcription-repair coupling factor [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567921|gb|ABL02726.1| transcription-repair coupling factor [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 1142

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 10/116 (8%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           +M E+L + + +  I VR  H ++ T E  +I+ D    +F +LV   ++  G+DIP   
Sbjct: 823 KMVENLKQIMPK--IHVRIAHGQMPTRELKKIMSDFYHARFQILVCTTIIETGIDIPNAN 880

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
            + I +A   G       L Q  GR  R+ +     YA  I KS QL + +T ++R
Sbjct: 881 TIIINNAQNFGL----AQLHQLRGRVGRSHHRA---YAYLIIKSYQL-LSKTAKKR 928


>gi|260904108|ref|ZP_05912430.1| DNA/RNA helicase, superfamily II [Brevibacterium linens BL2]
          Length = 489

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 5/112 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A+   R ++   TKR A+ L   L +R  +V+ +H ++   +R + ++  R G+ DVL
Sbjct: 264 LQAEGRGRTIIFTRTKRTADKLAAELGDRGFQVKPLHGDLGQAQREKALKSFREGQVDVL 323

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  ++   G+DI +   V       +     + + +  IGR  R  N+ + +
Sbjct: 324 VATDVAARGIDIDDVTHVVNYQCPDD-----EKTYVHRIGRTGRAGNTGIAV 370


>gi|33863047|ref|NP_894607.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9313]
 gi|33634964|emb|CAE20950.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9313]
          Length = 1193

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 127/305 (41%), Gaps = 38/305 (12%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF-FPHNAVEYFVSYYD 230
           L+ G    G+    + +     RP +V+ P    A +  S      + HN + Y  S   
Sbjct: 30  LMRGAGRVGRALIASAIARKQNRPLVVIVPTLEEANRWSSLLAMMGWSHNHL-YPTSEGS 88

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
            Y+P  + P T+    +   ++E +     S  R+       IV +  +    +  V++ 
Sbjct: 89  PYEP--FDPTTEIVWGQLQVLSELLGESSRSWDRA-------IVATERALQPHLPPVDAL 139

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +     L  G+ ++ + L ++L K  Y R        T+   GD ++IFP   E +  R+
Sbjct: 140 ASQCEILCRGEHIDLESLANTLSKLGYDRVTTVDQEATWSRRGDIVDIFPVSSE-LPVRL 198

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +FG++++++ EF P++ + +  V       N   +TP          ++E +   L   
Sbjct: 199 ELFGDELDKLKEFDPISQRSLDEV-------NELCLTPSGFSPLIAHQLRESMPDGL--- 248

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
               RL+  + L+Q       +LE      S  +  R L G    + P +L +YIP +S 
Sbjct: 249 ---DRLVSEKTLDQ-------LLEG-----STPDGIRRLMGIAWNK-PASLLDYIPANSF 292

Query: 471 LFVDE 475
           + +DE
Sbjct: 293 IAIDE 297


>gi|332685789|ref|YP_004455563.1| ATP-dependent DNA helicase RecG [Melissococcus plutonius ATCC
           35311]
 gi|332369798|dbj|BAK20754.1| ATP-dependent DNA helicase RecG [Melissococcus plutonius ATCC
           35311]
          Length = 679

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 8/106 (7%)

Query: 590 LTKRMAEDLTEYL---YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L  + A ++ EYL   +    +V  +H ++K  ++ EI+++ +  +  +LV   ++  G+
Sbjct: 480 LDAKNALEIYEYLSNFFNDEYKVGLLHGKMKNTQKEEIMQEFKNNQLQILVSTTVIEVGV 539

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
           ++P   L+ I+DAD+ G       L Q  GR  R   +   IL AD
Sbjct: 540 NVPNATLMLIIDADRFGL----AQLHQLRGRVGRGTEAAYCILIAD 581


>gi|159036815|ref|YP_001536068.1| ATP-dependent DNA helicase RecG [Salinispora arenicola CNS-205]
 gi|157915650|gb|ABV97077.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
           CNS-205]
          Length = 733

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  +   E+  ++R    G  DVLV   ++  G+D+P   ++ +LDAD+ G  
Sbjct: 549 GLRIGVLHGRLAADEKDAVMRSFAAGDLDVLVATTVVEVGVDVPNATVMIVLDADRFGV- 607

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKS 696
              + L Q  GR  R     + L     T+ 
Sbjct: 608 ---SQLHQLRGRVGRGAAPGLCLLVTEATEG 635


>gi|116074923|ref|ZP_01472184.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9916]
 gi|116068145|gb|EAU73898.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9916]
          Length = 1194

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 27/179 (15%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L+ GDS++ +EL  +L +  Y+R       GT+   GD ++IFP   E +  R+  FG++
Sbjct: 159 LRKGDSLDLEELAINLSQLGYERVSTIDQEGTWSRRGDIVDIFPVSSE-LPVRLEFFGDE 217

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           ++++ EF P + + +  VE +++          P +   ++    E   +L+  E+ G L
Sbjct: 218 LDKLREFDPASQRSLDPVEHLRLTPTGF----SPLIAEQLRDSMPEGLDQLLSEEQLGAL 273

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           L+ Q  E                       R L G    E P +L +Y+P    + +DE
Sbjct: 274 LDGQTPEG---------------------MRRLMGLA-WEQPASLLDYLPNHCSVVIDE 310


>gi|86739390|ref|YP_479790.1| ATP-dependent DNA helicase RecQ [Frankia sp. CcI3]
 gi|86566252|gb|ABD10061.1| ATP-dependent DNA helicase, RecQ-like [Frankia sp. CcI3]
          Length = 754

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           LTK  AE+LT +L  +   V   H  ++  ERI    DL   +   L+  + L  G D P
Sbjct: 273 LTKAAAEELTIFLRGQGHAVATYHGGIEAAERIVAEEDLLANRVKALIATSALGMGFDKP 332

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVIL 688
           + G V  + A       S  S  Q IGRA R ++ ++V+L
Sbjct: 333 DLGFVVHIGAPS-----SPISYYQQIGRAGRALDTAEVVL 367


>gi|33597517|ref|NP_885160.1| ATP-dependent DNA helicase [Bordetella parapertussis 12822]
 gi|33573945|emb|CAE38263.1| ATP-dependent DNA helicase [Bordetella parapertussis]
          Length = 663

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H  +   E+ E++R  R G+ D+LV   ++  G+D+P   L+ I  A++ G  
Sbjct: 487 DLRIGLVHGRLPQAEKAEVMRAFREGEIDLLVATTVIEVGVDVPNASLMVIEHAERFGL- 545

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITK 695
                L Q  GR  R       V+LY   +++
Sbjct: 546 ---AQLHQLRGRVGRGTAESICVLLYQAPLSQ 574


>gi|33592698|ref|NP_880342.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I]
 gi|33572344|emb|CAE41901.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I]
 gi|332382113|gb|AEE66960.1| ATP-dependent DNA helicase RecG [Bordetella pertussis CS]
          Length = 656

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H  +   E+ E++R  R G+ D+LV   ++  G+D+P   L+ I  A++ G  
Sbjct: 480 DLRIGLVHGRLPQAEKAEVMRAFREGEIDLLVATTVIEVGVDVPNASLMVIEHAERFGL- 538

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITK 695
                L Q  GR  R       V+LY   +++
Sbjct: 539 ---AQLHQLRGRVGRGTAESICVLLYQAPLSQ 567


>gi|33601915|ref|NP_889475.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50]
 gi|33576352|emb|CAE33431.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50]
          Length = 663

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H  +   E+ E++R  R G+ D+LV   ++  G+D+P   L+ I  A++ G  
Sbjct: 487 DLRIGLVHGRLPQAEKAEVMRAFREGEIDLLVATTVIEVGVDVPNASLMVIEHAERFGL- 545

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITK 695
                L Q  GR  R       V+LY   +++
Sbjct: 546 ---AQLHQLRGRVGRGTAESICVLLYQAPLSQ 574


>gi|327304303|ref|XP_003236843.1| ATP-dependent RNA helicase DED1 [Trichophyton rubrum CBS 118892]
 gi|326459841|gb|EGD85294.1| ATP-dependent RNA helicase DED1 [Trichophyton rubrum CBS 118892]
          Length = 678

 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+E+L  ++     +H +    ER   +   R G+  +LV   +   G
Sbjct: 464 LIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARG 523

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 524 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 559


>gi|251809809|ref|ZP_04824282.1| transcription-repair coupling factor [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251806677|gb|EES59334.1| transcription-repair coupling factor [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 1166

 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 79/184 (42%), Gaps = 21/184 (11%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK+G  ++    L+ LV   Y+R+ +    G F + G  I+I+P  L     R+ +F  +
Sbjct: 138 LKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGTPVRIELFDTE 195

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR- 415
           ++ I +F   T +   N+  ++I   S Y+     +       K+  +    ++EK  R 
Sbjct: 196 VDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNEFKKAYEYTRPKIEKSVRN 255

Query: 416 ----LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                 E+ +L +   +D ++L    S                 E P TL +Y  +++++
Sbjct: 256 DLKETYESFKLFESTFFDHQLLRRLVSFMY--------------EKPSTLIDYFQKNAII 301

Query: 472 FVDE 475
            VDE
Sbjct: 302 VVDE 305


>gi|134034090|sp|P0C2M6|DED1_EMENI RecName: Full=ATP-dependent RNA helicase ded1
 gi|259482717|tpe|CBF77461.1| TPA: ATP-dependent RNA helicase ded1 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:P0C2M6] [Aspergillus
           nidulans FGSC A4]
          Length = 668

 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+E+L  +      +H +    ER   +   R G++ +LV   +   G
Sbjct: 450 LIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPILVATAVAARG 509

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 510 LDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 545


>gi|6714410|gb|AAF26098.1|AC012328_1 unknown protein [Arabidopsis thaliana]
          Length = 2042

 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 10/97 (10%)

Query: 623  EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
            EI+ D R G  +++V  ++L EGLD+  C LV   D        +  S IQ+ GR AR  
Sbjct: 1093 EIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPAS-----NICSFIQSRGR-ARMQ 1146

Query: 683  NSKVILY---ADTITKS-IQLAIDETTRRREKQLEHN 715
            NS  ++     D +T+S +   +    R RE+ L+H+
Sbjct: 1147 NSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHS 1183


>gi|19075533|ref|NP_588033.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces pombe 972h-]
 gi|21542025|sp|O13370|DED1_SCHPO RecName: Full=ATP-dependent RNA helicase ded1; AltName:
           Full=Multicopy suppressor of overexpressed cyr1 protein
           2
 gi|2558968|gb|AAC04893.1| suppressor of uncontrolled mitosis [Schizosaccharomyces pombe]
 gi|3080516|emb|CAA18646.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces pombe]
 gi|3514095|gb|AAC34121.1| putative DEAD box RNA helicase Dep1 [Schizosaccharomyces pombe]
 gi|4582232|emb|CAB40192.1| putative RNA helicase [Schizosaccharomyces pombe]
          Length = 636

 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ LT+YL   N     +H +    ER   +   R G+  ++V   +   G
Sbjct: 434 LIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRG 493

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           LDIP    V   D   +         +  IGR  R  N+
Sbjct: 494 LDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNT 527


>gi|223938508|ref|ZP_03630400.1| primosomal protein N' [bacterium Ellin514]
 gi|223892770|gb|EEF59239.1| primosomal protein N' [bacterium Ellin514]
          Length = 773

 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIG 676
           I+ D RLGK D+LVG  ++ +GL  P   LV I+ AD    L       R+   L Q  G
Sbjct: 567 ILGDFRLGKIDILVGTQMIAKGLHFPNVTLVGIVYADMALHLADFRAGERTFQLLTQVAG 626

Query: 677 RAARN 681
           RA R 
Sbjct: 627 RAGRG 631


>gi|291296115|ref|YP_003507513.1| DEAD/DEAH box helicase domain-containing protein [Meiothermus ruber
           DSM 1279]
 gi|290471074|gb|ADD28493.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279]
          Length = 768

 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 7/112 (6%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           AA+QGLR L+    +R AE +    Y  + RVR   +     +R ++ + L+ G   VLV
Sbjct: 284 AAEQGLRTLIFTNARRTAELVAR--YAADDRVRPYRAGYTAADRRKLEQALQEGTVRVLV 341

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
             + L  G+DI    +V +L     G+  S +S  Q  GRA R     ++L+
Sbjct: 342 STSALELGVDIGGLEVVVLL-----GYPGSVSSFWQRAGRAGRGQQRALVLW 388


>gi|170053024|ref|XP_001862487.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
 gi|167873709|gb|EDS37092.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
          Length = 935

 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I++ V TK+  EDL + +         +H +    ER  +++D R GK  +LV  ++  
Sbjct: 504 KIIIFVETKKKVEDLLKNIVRDGYGATSIHGDKSQSERDYVLQDFRHGKSTILVATDVAA 563

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     +  S    I  IGR  R
Sbjct: 564 RGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGR 595


>gi|158520449|ref|YP_001528319.1| type III restriction protein res subunit [Desulfococcus oleovorans
           Hxd3]
 gi|158509275|gb|ABW66242.1| type III restriction protein res subunit [Desulfococcus oleovorans
           Hxd3]
          Length = 619

 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%)

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           ER +  R +HS +   +  E+++DLR  + D +V + +L EG D P   + AI       
Sbjct: 307 ERGLNAREIHSNMPADQIEEVLQDLRRSRIDCIVQVRMLGEGFDHPNLSVAAIFQP---- 362

Query: 664 FLRSKTSLIQTIGRAARNVN 683
             RS +  +Q IGR  R ++
Sbjct: 363 -FRSLSPYVQFIGRVMRVIH 381


>gi|317503390|ref|ZP_07961434.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
 gi|315665485|gb|EFV05108.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
          Length = 542

 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   + +   L  ++I    MHS++    R E++   + G+FDVLV  +++ 
Sbjct: 247 RVIIFCGSKMKVKQVAGALQRKHINCGEMHSDLDQAMRDEVMFKFKSGQFDVLVATDIVA 306

Query: 644 EGLDIPECGLVAILDA--DKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            G+DI +  +V   D   D E ++    +T+     G A   V+   I Y   I K +  
Sbjct: 307 RGIDIDDISMVINYDVPHDAEDYVHRIGRTARAAREGSAITFVSDDDIYYFQLIEKFLGK 366

Query: 700 AIDET 704
            +D+T
Sbjct: 367 QVDKT 371


>gi|309379212|emb|CBX22169.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 1164

 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 17/212 (8%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L S L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLTGRTFWLKTGQTLDIGRLKSDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            V  I++     +    PT + A K  +   +
Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227



 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 853 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 909

Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
              L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 910 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 945


>gi|291276231|gb|ADD91316.1| vasa [Seriola quinqueradiata]
          Length = 650

 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R G+  VLV  ++  
Sbjct: 469 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGRCPVLVATSVAA 528

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDIP+   V   D        +    +  IGR  R  N+
Sbjct: 529 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNT 564


>gi|229496684|ref|ZP_04390398.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316581|gb|EEN82500.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
          Length = 451

 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 18/132 (13%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           +K     L   L  R + V  MHS++    R +++RD + G  +VLV  +++  G+DI +
Sbjct: 256 SKLKVHQLATALKSRGVNVAEMHSDLDQTTREQVMRDFKTGYVEVLVATDIVARGIDIDD 315

Query: 651 CGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
             +V   D   D E +       +  IGR AR  + + +        +I L ++E  +R 
Sbjct: 316 IKVVINYDMPHDPEDY-------VHRIGRTARGTDGRGV--------AITL-VNEEEQRS 359

Query: 709 EKQLEHNKKHNI 720
              LEH   ++I
Sbjct: 360 FAALEHFLGYSI 371


>gi|65736550|dbj|BAD98517.1| hypotheical protein [Nasutitermes takasagoensis]
          Length = 142

 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++      + ++   T+R  + LTE ++ R+  V  MH +++  ER  I+R  R
Sbjct: 1   DLYDTLSIT-----QAVIFCNTRRKVDWLTENMHNRDFTVSAMHGDMEQRERDLIMRQFR 55

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 56  TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 93


>gi|237836123|ref|XP_002367359.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii
           ME49]
 gi|14595111|emb|CAC43441.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii]
 gi|211965023|gb|EEB00219.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii
           ME49]
 gi|221484990|gb|EEE23280.1| conserved hypothetical protein [Toxoplasma gondii GT1]
 gi|221505957|gb|EEE31592.1| eukaryotic translation initiation factor 4A, putative [Toxoplasma
           gondii VEG]
          Length = 412

 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT  + ER+  V  MH ++    R  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 287 TRRKVDFLTSKMSERDFTVSSMHGDMDQKSREMIMREFRSGSTRVLITTDLLARGIDVQQ 346

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
             LV   D  A KE +       I  IGR+ R
Sbjct: 347 VSLVINYDLPATKENY-------IHRIGRSGR 371


>gi|302662748|ref|XP_003023025.1| hypothetical protein TRV_02846 [Trichophyton verrucosum HKI 0517]
 gi|291187001|gb|EFE42407.1| hypothetical protein TRV_02846 [Trichophyton verrucosum HKI 0517]
          Length = 677

 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+E+L  ++     +H +    ER   +   R G+  +LV   +   G
Sbjct: 463 LIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARG 522

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 523 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 558


>gi|302501664|ref|XP_003012824.1| hypothetical protein ARB_01075 [Arthroderma benhamiae CBS 112371]
 gi|291176384|gb|EFE32184.1| hypothetical protein ARB_01075 [Arthroderma benhamiae CBS 112371]
          Length = 677

 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+E+L  ++     +H +    ER   +   R G+  +LV   +   G
Sbjct: 463 LIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARG 522

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 523 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 558


>gi|297565888|ref|YP_003684860.1| ATP-dependent DNA helicase RecG [Meiothermus silvanus DSM 9946]
 gi|296850337|gb|ADH63352.1| ATP-dependent DNA helicase RecG [Meiothermus silvanus DSM 9946]
          Length = 903

 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 7/104 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R+A++L E L   ++R+  +H +++  E+  ++   R   FD+LV   ++  G+DIP+  
Sbjct: 710 RLAQELQELLP--DVRIDLLHGKMRAEEKDAVMERFRYRHFDLLVSTTVIEVGVDIPQAT 767

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITK 695
           ++ I +A++ G       L Q  GR  R  + +  IL A   +K
Sbjct: 768 VMVIENAERFGL----AQLHQLRGRVGRGGLEAYCILIAGETSK 807


>gi|261202786|ref|XP_002628607.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis
           SLH14081]
 gi|225556973|gb|EEH05260.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus G186AR]
 gi|239590704|gb|EEQ73285.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis
           SLH14081]
 gi|239612419|gb|EEQ89406.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis ER-3]
 gi|240277518|gb|EER41026.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus H143]
 gi|325093598|gb|EGC46908.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus H88]
 gi|327355221|gb|EGE84078.1| ATP-dependent RNA helicase FAL1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 399

 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 357


>gi|145612307|ref|XP_367108.2| hypothetical protein MGG_07033 [Magnaporthe oryzae 70-15]
 gi|145019494|gb|EDK03722.1| hypothetical protein MGG_07033 [Magnaporthe oryzae 70-15]
          Length = 645

 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L+   G   L+ V TKR A++L+++L  +N+    +H +    ER   +   R G+  +L
Sbjct: 418 LSTHGGGLTLIFVETKRNADELSDFLQNQNLPATSIHGDRTQRERERALEMFRTGRCPIL 477

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 478 VATAVAARGLDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 522


>gi|111023001|ref|YP_705973.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
 gi|110822531|gb|ABG97815.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
          Length = 586

 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 8/145 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  EDL E L  R      ++ ++   +R   I  L+ G  D+LV  ++   
Sbjct: 253 MIIFVRTKQATEDLAEKLRSRGFSASAINGDIVQAQRERTIGQLKSGALDILVATDVAAR 312

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R    + +L+     + +  AI+
Sbjct: 313 GLDVDRISHVVNYDIPHDTESYVHR----IGRTGRAGR--AGEALLFVAPRERHLLKAIE 366

Query: 703 ETTRRREKQLEHNKKHNINPQSVKE 727
           + TR+   +++     ++N Q V +
Sbjct: 367 KATRQPLAEMQLPSVDDVNAQRVSK 391


>gi|109946646|ref|YP_663874.1| ATP-dependent DNA helicase RecG [Helicobacter acinonychis str.
           Sheeba]
 gi|109713867|emb|CAJ98875.1| ATP-dependent DNA helicase [Helicobacter acinonychis str. Sheeba]
          Length = 621

 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177
           N KI  P+ S  +N+       F     +  + DQ  AI ++   + S    + L++G  
Sbjct: 209 NAKIICPNNSERLNH-------FIASLPFKLTNDQQNAIKEIQNDLTSPIACKRLIVGDV 261

Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           G GKT   +A ++ A     ++MAP  ILA QLY+E   F P
Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|198453003|ref|XP_002137583.1| GA27302 [Drosophila pseudoobscura pseudoobscura]
 gi|198132172|gb|EDY68141.1| GA27302 [Drosophila pseudoobscura pseudoobscura]
          Length = 800

 Score = 45.1 bits (105), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+LY+ +  V  +H +    ER E +R  R G   +LV   +   G
Sbjct: 559 LIFVETKKGADSLEEFLYQCSHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 618

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 619 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 662


>gi|145338056|ref|NP_566199.4| DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA
           binding / double-stranded RNA binding / helicase/
           nucleic acid binding / ribonuclease III [Arabidopsis
           thaliana]
 gi|322518659|sp|Q3EBC8|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName:
           Full=Dicer-like protein 2; Short=AtDCL2
 gi|332640403|gb|AEE73924.1| protein dicer-like 2 [Arabidopsis thaliana]
 gi|332640405|gb|AEE73926.1| protein dicer-like 2 [Arabidopsis thaliana]
          Length = 1388

 Score = 45.1 bits (105), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 10/97 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI+ D R G  +++V  ++L EGLD+  C LV   D        +  S IQ+ GR AR  
Sbjct: 439 EIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPAS-----NICSFIQSRGR-ARMQ 492

Query: 683 NSKVILY---ADTITKS-IQLAIDETTRRREKQLEHN 715
           NS  ++     D +T+S +   +    R RE+ L+H+
Sbjct: 493 NSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHS 529


>gi|84622705|ref|YP_450077.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84366645|dbj|BAE67803.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 717

 Score = 45.1 bits (105), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +K  E+ + + D + G+ D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 541 GVRVALVHGRMKPAEKQQAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 599

Query: 666 RSKTSLIQTIGRAAR--NVNSKVILY 689
                L Q  GR  R  + +S V+LY
Sbjct: 600 ---AQLHQLRGRVGRGADASSCVLLY 622


>gi|308159948|gb|EFO62462.1| ATP-dependent RNA helicase [Giardia lamblia P15]
          Length = 901

 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+ V TK   E LT  L   N+R   ++  +   +R   + D   G++ +L+  ++  
Sbjct: 300 RLLVFVATKHHCEYLTSVLQANNLRATCIYGSLDQKQRTLALSDFDKGRYSILISTDVAA 359

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DIP    V   +     F  S  + +  +GR+AR
Sbjct: 360 RGIDIPNLNCVINYN-----FPSSGKNYVHRVGRSAR 391


>gi|281205109|gb|EFA79302.1| hypothetical protein PPL_07720 [Polysphondylium pallidum PN500]
          Length = 3481

 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 7/103 (6%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE-RIEIIRDLRLGKFDVLVGINLLREGL 646
           +VL     +    +L+ + +   YM      LE + EI+   +  +  +LV  ++L EG+
Sbjct: 640 SVLRALKKKHFNSFLHAKKLIGHYMADGGMDLEEQQEILAKFKDNECRLLVATSVLEEGI 699

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           DIP C L+   D D +  LR   SLIQ  GR AR+ NSK  ++
Sbjct: 700 DIPACNLIICFDDDLQ--LR---SLIQRRGR-ARSANSKFYVF 736


>gi|296807019|ref|XP_002844169.1| ATP-dependent RNA helicase DED1 [Arthroderma otae CBS 113480]
 gi|238843652|gb|EEQ33314.1| ATP-dependent RNA helicase DED1 [Arthroderma otae CBS 113480]
          Length = 680

 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+E+L  ++     +H +    ER   +   R G+  +LV   +   G
Sbjct: 462 LIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARG 521

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 522 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 557


>gi|218514909|ref|ZP_03511749.1| ATP-dependent DNA helicase protein [Rhizobium etli 8C-3]
          Length = 431

 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 6/75 (8%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTF----TMAKVIEAMQRPAIVMAP 201
           + P+  Q  AIA +LK +   E+ ++LL G  GSGKT     +MA VIE+  + A++MAP
Sbjct: 288 FSPTSSQNEAIADILKDMAGTERMLRLLQGDVGSGKTLVALMSMAAVIESGGQ-AVLMAP 346

Query: 202 NKILAAQLYSEFKNF 216
            +ILA Q ++    F
Sbjct: 347 TEILARQHHATISKF 361


>gi|303319503|ref|XP_003069751.1| Eukaryotic translation initiation factor, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|142985565|sp|Q1DTB3|FAL1_COCIM RecName: Full=ATP-dependent RNA helicase FAL1
 gi|240109437|gb|EER27606.1| Eukaryotic translation initiation factor, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320040787|gb|EFW22720.1| ATP-dependent RNA helicase FAL1 [Coccidioides posadasii str.
           Silveira]
          Length = 399

 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 357


>gi|126662926|ref|ZP_01733924.1| transcription-repair coupling factor [Flavobacteria bacterium
           BAL38]
 gi|126624584|gb|EAZ95274.1| transcription-repair coupling factor [Flavobacteria bacterium
           BAL38]
          Length = 1087

 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 104/252 (41%), Gaps = 24/252 (9%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           + G+ GS  +F    + +  + P +++  NK  AA   ++ +       V ++ S Y   
Sbjct: 1   MTGLVGSSLSFVAHSLFKKSELPFLILFSNKEEAAYYLNDLEQLINAEDVLFYPSSY--- 57

Query: 233 QPEAYVPRTDTYIEKESSIN-----EQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGS 286
                  R    IE+  + N     E ++R+          +   I+VS    I+  + +
Sbjct: 58  -------RRPYQIEETDNANVLLRAEVLNRINS-------RKKPAIIVSYAEAIFEKVVT 103

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            +   +  ++L + D +    +  +L +  +KR D     G F V G  I++F S   D 
Sbjct: 104 RKELEKNTLKLSVEDKLSIDFINETLFEYNFKRVDFVTEPGEFSVRGGIIDVF-SFSNDN 162

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  FGN+I+ I  F   T   I  ++ I I  N      +    + + YI E+  + 
Sbjct: 163 PYRIEFFGNEIDSIRSFDVETQLSIEKLKKISIIPNVENKLLQENRESFLDYINEKTVLL 222

Query: 407 LIELEKEGRLLE 418
           +   E  G+ L+
Sbjct: 223 IQNTELLGQQLD 234



 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 15/155 (9%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY--LYERNI---RVRYM 612
           P+E    R   E + D I+   Q+G ++    +  R+ E++ E   + +R +   +V   
Sbjct: 714 PIETHVIRFNEEAIRDAISYEIQRGGQVFF--INNRI-ENIKEVAGMIQRLVPGAKVGIG 770

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H +++  +  E++     G+FDVLV   ++  GLD+P    + I +A+  G     + L 
Sbjct: 771 HGQMEGKKLEELMLAFMEGEFDVLVATTIIESGLDVPNANTIFINNANNFGL----SDLH 826

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
           Q  GR  R+ N K   Y   IT    +   E  +R
Sbjct: 827 QMRGRVGRS-NKKAFCYF--ITPPYSMMTGEAQKR 858


>gi|89114036|gb|ABD61609.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550

Query: 683 NSKVILYADTIT----KSIQL 699
              VIL A + T    +S+QL
Sbjct: 551 AYHVILVAPSYTSPTVESVQL 571


>gi|15836956|ref|NP_297644.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa 9a5c]
 gi|9105182|gb|AAF83164.1|AE003887_7 ATP-dependent DNA helicase [Xylella fastidiosa 9a5c]
          Length = 718

 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +K  E+   +R  +  + DVLV   ++  G+D+P   L+ I +A++ G  
Sbjct: 542 GVRVGLVHGRMKAAEKQRTMRAFKCNEIDVLVATTVIEVGVDVPNASLMIIENAERFGL- 600

Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689
                L Q  GR  R   V+S V+LY
Sbjct: 601 ---AQLHQLRGRVGRGSVVSSCVLLY 623


>gi|255066129|ref|ZP_05317984.1| ATP-dependent DNA helicase RecG [Neisseria sicca ATCC 29256]
 gi|255049674|gb|EET45138.1| ATP-dependent DNA helicase RecG [Neisseria sicca ATCC 29256]
          Length = 704

 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E L   L E NI +  +H  +K  E+ E++     G+ +VLV   ++  G+D+P   L+ 
Sbjct: 520 EQLQAALPELNIGL--VHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMV 577

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKV--ILYADTITK 695
           I  A++ G       L Q  GR  R     V  +L+A+ +++
Sbjct: 578 IEHAERMGL----AQLHQLRGRVGRGAAESVCILLFAEPLSE 615


>gi|212534920|ref|XP_002147616.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|212534922|ref|XP_002147617.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|242791505|ref|XP_002481771.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|210070015|gb|EEA24105.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|210070016|gb|EEA24106.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|218718359|gb|EED17779.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 399

 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 357


>gi|170105186|ref|XP_001883806.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164641441|gb|EDR05702.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 662

 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L   N+    +H +    ER   ++  R G+  ++V   +   G
Sbjct: 443 LVFVETKRMADMLSDFLMGNNLPATSIHGDRTQREREMALQTFRTGRTPIMVATAVAARG 502

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ V
Sbjct: 503 LDIPNVTHVVNYDLPSD-----IDDYVHRIGRTGRAGNTGV 538


>gi|119614684|gb|EAW94278.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_c [Homo
           sapiens]
          Length = 936

 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 499 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 558

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 559 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 610


>gi|332296364|ref|YP_004438287.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
           DSM 14796]
 gi|332179467|gb|AEE15156.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
           DSM 14796]
          Length = 667

 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 14/171 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H  +   E+ +I++D + GK  +LV   ++  G+DIP+  ++ I + ++ G     
Sbjct: 490 VGLIHGRLSQSEQDKIMQDFKTGKIKILVSTTVIEVGIDIPQANIMVIENPERFGL---- 545

Query: 669 TSLIQTIGRAAR-NVNSKVILYADTITKS---IQL--AIDETTRRREKQLEHNKKHNI-- 720
             L Q  GR  R N++S   L AD  + S   +Q+   ++      E+ LE   +  I  
Sbjct: 546 AQLHQLRGRIGRGNLSSTCYLLADEESYSSRRVQIFEKVNNGFELAERDLELRGQGEIIG 605

Query: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771
           + QS  ++ ++V +P  L+D     I+    +L +SK     + K L+ +M
Sbjct: 606 SKQSGLDQTLKVANP--LKDTDIMRIAQKVAELIISKDPDLTYFKELKLKM 654


>gi|330984017|gb|EGH82120.1| RecG-like helicase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 777

 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H   K  E++EII  +  G  DVL+   L+  G+DI +   +A++DAD  G    
Sbjct: 604 RVAVIHGRSKRDEKVEIIDLMNRGDADVLLATTLIEIGIDIADLRALAVIDADYLG---- 659

Query: 668 KTSLIQTIGRAARN 681
             +L Q  GR ARN
Sbjct: 660 AYTLHQLRGRVARN 673


>gi|326482079|gb|EGE06089.1| ATP-dependent RNA helicase DED1 [Trichophyton equinum CBS 127.97]
          Length = 680

 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+E+L  ++     +H +    ER   +   R G+  +LV   +   G
Sbjct: 466 LIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARG 525

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 526 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 561


>gi|289581647|ref|YP_003480113.1| helicase [Natrialba magadii ATCC 43099]
 gi|289531200|gb|ADD05551.1| helicase domain protein [Natrialba magadii ATCC 43099]
          Length = 829

 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 16/145 (11%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-------HSEVKTLERIEIIRDLR 629
           L  + G R+++   ++  AE LT +L +     R++          +   ++ E++ + R
Sbjct: 367 LGLEGGERVIVFTESRDTAEALTAFLSDSFDAKRFVGQGDREGSDGMTQKQQQEVLDEFR 426

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
             +F+VLV  ++  EGLD+PE  LV   +      + +    IQ  GR  R    + V+L
Sbjct: 427 AAEFEVLVSTSVAEEGLDVPEVDLVLFYEP-----VPTAIRSIQRKGRTGRQSEGRVVVL 481

Query: 689 YADTITKSIQLAIDETTRRREKQLE 713
            A+         I   +RRREK++E
Sbjct: 482 MAEDTRDEAYFWI---SRRREKEME 503


>gi|156053564|ref|XP_001592708.1| ATP-dependent RNA helicase DED1 [Sclerotinia sclerotiorum 1980]
 gi|160380639|sp|A7EJY3|DED1_SCLS1 RecName: Full=ATP-dependent RNA helicase ded1
 gi|154703410|gb|EDO03149.1| ATP-dependent RNA helicase DED1 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 678

 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L  +N     +H +    ER   +   R G+  +LV   +   G
Sbjct: 449 LIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARG 508

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 509 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 544


>gi|149237124|ref|XP_001524439.1| hypothetical protein LELG_04411 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451974|gb|EDK46230.1| hypothetical protein LELG_04411 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 433

 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIR  + G ++VLV  ++  EGLDI E  L+   D+       S    IQ +GR  R  
Sbjct: 70  EIIRQFKNGDYNVLVATSIGEEGLDIGEVDLIVCYDS-----TSSPIKNIQRMGRTGRKR 124

Query: 683 NSKVIL 688
           + KV+L
Sbjct: 125 DGKVVL 130


>gi|90407853|ref|ZP_01216029.1| ATP-dependent DNA helicase RecG [Psychromonas sp. CNPT3]
 gi|90311028|gb|EAS39137.1| ATP-dependent DNA helicase RecG [Psychromonas sp. CNPT3]
          Length = 690

 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 8/110 (7%)

Query: 589 VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           VL  + AED+   L     ++R+  +H  +  LE+  ++   + G+ D+LV   ++  G+
Sbjct: 495 VLQCQAAEDIANNLQLSLVDLRIGLVHGRMSALEKQYVMDAFKSGELDLLVATTVIEVGV 554

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTIT 694
           D+P   L+ I +A++ G       L Q  GR  R   +   V+LY D ++
Sbjct: 555 DVPNASLMIIENAERLGL----AQLHQLRGRVGRGTVASHCVLLYKDPLS 600


>gi|120403147|ref|YP_952976.1| ATP-dependent DNA helicase RecG [Mycobacterium vanbaalenii PYR-1]
 gi|119955965|gb|ABM12970.1| ATP-dependent DNA helicase RecG [Mycobacterium vanbaalenii PYR-1]
          Length = 752

 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  MH  +   E+  ++   R G+ DVLV   ++  G+D+P   ++ ++DAD+ G  
Sbjct: 571 DLRLGLMHGRLSGDEKAAVMSAFRRGEIDVLVCTTVIEVGVDVPNATVMVVMDADRFGI- 629

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKS 696
              + L Q  GR  R  +  + L    + +S
Sbjct: 630 ---SQLHQLRGRIGRGEHPSLCLLVTKLPES 657


>gi|322515787|ref|ZP_08068732.1| exopolyphosphatase [Streptococcus vestibularis ATCC 49124]
 gi|322125749|gb|EFX97067.1| exopolyphosphatase [Streptococcus vestibularis ATCC 49124]
          Length = 1195

 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 69/349 (19%), Positives = 142/349 (40%), Gaps = 48/349 (13%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF----- 225
           QL++G +GS K   MA  +        ++   +  A QL  +       + V  F     
Sbjct: 28  QLVMGFSGSSKAVVMASALSNQVPKIFIVTSTQNEAEQLVGDLSAILGEDKVYSFFADDV 87

Query: 226 -VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
             + + +  PE    +T + +E   S+N  ID+          E +  +V S V     +
Sbjct: 88  SAAEFIFASPE----KTHSRLE---SLNFLIDK----------ETSGILVTSLVGTKLHL 130

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
            + E Y    + L +G+  + + L   L    Y+R +  +  G F   GD ++I+    E
Sbjct: 131 PNPEIYKDSRIDLTLGEEHDLEALSKHLTHIGYQRVEQVLSPGEFSRRGDILDIYELTAE 190

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            + +R+  FG++I+ I +F   + + + N++ + I      +  R     A K ++  + 
Sbjct: 191 -LPYRLEFFGDEIDGIRQFDSDSQKSLNNLDHVAISPADDIILTREDYQRAEKALESAVS 249

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                 + EG             Y  E+L  T      ++  ++L+     +   TLF+Y
Sbjct: 250 ------KAEG---------PHKAYLEEVLSVTIDGYRHKDLRKFLSLFY--DKAYTLFDY 292

Query: 465 IPEDSLLFVDESHVTIP-------QISGMYRGDFHRKATLAEYGFRLPS 506
           +P+ + +FVD+    +        +++ +   D H+  +L+   + + S
Sbjct: 293 LPKGTPVFVDDFQKIVDRHGRLELEVANLLTEDLHQGKSLSYLNYFVDS 341


>gi|283769600|ref|ZP_06342496.1| primosomal protein N' [Bulleidia extructa W1219]
 gi|283103868|gb|EFC05254.1| primosomal protein N' [Bulleidia extructa W1219]
          Length = 694

 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 11/108 (10%)

Query: 591 TKRMAEDL-TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+R+ E++  E+   R +R+ + +++ K   R +I+      K D+LVG  ++ +GLD P
Sbjct: 489 TQRLCEEVQKEFPKSRILRMDFDNTQRKNAHR-KILESFGNHKADILVGTQMVAKGLDFP 547

Query: 650 ECGLVAILDADKEGFLRSKTS--------LIQTIGRAARNVNSKVILY 689
              LV +L+AD +G  RS           L+Q  GR+ R      +++
Sbjct: 548 NVTLVGVLNAD-DGLQRSDYRSGEHTFDLLMQAAGRSGRGEKKGTVIF 594


>gi|239502743|ref|ZP_04662053.1| putative helicase [Acinetobacter baumannii AB900]
          Length = 427

 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           EI  A + G+  ++ V      + L +   +  IR RY+  E    ER   + +L     
Sbjct: 268 EILKAREYGMTAMVLVQHTSHGDTLLKLFDDIGIRARYIRGEDDQGERKSALTELANKDI 327

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           DVL+G  +L  G+D+P  GL+ +    K     ++ +L Q IGR  R
Sbjct: 328 DVLIGTTILDVGVDVPAVGLIILAGGGK-----AEVALRQRIGRGLR 369


>gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
 gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
          Length = 695

 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 11/155 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TK+  E++ + L  R  +   ++ ++    R   +  LR G+ D+LV  ++   
Sbjct: 352 IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVATDVAAR 411

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+    LV   D   D E ++      I   GRA R  + + IL+     K +   I+
Sbjct: 412 GLDVERISLVVNYDIPHDTESYVHR----IGRTGRAGR--DGEAILFVTPREKYMLRQIE 465

Query: 703 ETTRRREKQLEHNKKHNINP---QSVKEKIMEVID 734
           + TR++ + +      ++N    Q   E+I E I+
Sbjct: 466 KATRQKVEPMHMPTAQDVNSSRKQRFAEQITETIE 500


>gi|294666474|ref|ZP_06731717.1| ATP-dependent DNA helicase Lhr [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603780|gb|EFF47188.1| ATP-dependent DNA helicase Lhr [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1464

 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 10/157 (6%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615
           P+ +  +  Q   VY ++   AQQ    L+ V T+RMAE    +L +     RV   H  
Sbjct: 252 PLSVVMSNDQWLQVYADVAAFAQQHRTTLVFVNTRRMAERAARHLGDLLGKQRVSAHHGS 311

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R+   + L+ G   VLV    L  GLDI +  LV  L     G  RS  + +Q  
Sbjct: 312 LSRETRLLAEQRLKAGDLTVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRA 366

Query: 676 GRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709
           GR+   V    K  L+  T  + ++  A+ ++ RR E
Sbjct: 367 GRSGHKVGGTPKARLFPQTRDELVECAALLDSIRRGE 403


>gi|281351661|gb|EFB27245.1| hypothetical protein PANDA_013938 [Ailuropoda melanoleuca]
          Length = 940

 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 506 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 565

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 566 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 617


>gi|225684976|gb|EEH23260.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb03]
 gi|226294288|gb|EEH49708.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 399

 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 357


>gi|241047288|ref|XP_002407236.1| translation initiation factor 4F, helicase subunit, putative
           [Ixodes scapularis]
 gi|215492155|gb|EEC01796.1| translation initiation factor 4F, helicase subunit, putative
           [Ixodes scapularis]
          Length = 422

 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ER+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 297 TRRKVDWLTEKMHERDFTVSALHGDMGQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 356

Query: 651 CGLVAILD 658
             LV   D
Sbjct: 357 VSLVINFD 364


>gi|119482938|ref|XP_001261497.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
 gi|119409652|gb|EAW19600.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
          Length = 691

 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLVA 655
           LTE      I  RY+ ++     R+E +R  R G++ VL+   L  EG DIP  +C L+A
Sbjct: 320 LTETFRNYGIDARYITAKTPKDVRMEQLRAFRNGEYPVLLNCGLFTEGTDIPNIDCVLLA 379

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR 680
                     RS+  LIQ IGR  R
Sbjct: 380 RP-------TRSRNLLIQMIGRGLR 397


>gi|94450854|gb|ABF19797.1| dicer-like 2 spliceform 1 [Arabidopsis thaliana]
          Length = 1386

 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 10/97 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI+ D R G  +++V  ++L EGLD+  C LV   D        +  S IQ+ GR AR  
Sbjct: 437 EIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPAS-----NICSFIQSRGR-ARMQ 490

Query: 683 NSKVILY---ADTITKSIQLA-IDETTRRREKQLEHN 715
           NS  ++     D +T+S  +  +    R RE+ L+H+
Sbjct: 491 NSDYLMMVESGDLLTQSRSMKYLSGGKRMREESLDHS 527


>gi|91777020|ref|YP_546776.1| replication restart DNA helicase PriA [Methylobacillus flagellatus
           KT]
 gi|91711007|gb|ABE50935.1| replication restart DNA helicase PriA [Methylobacillus flagellatus
           KT]
          Length = 738

 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 7/97 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R+ E LT  L E  +      S  +     E++  + +G+ D+LVG  +L +G D P 
Sbjct: 500 TQRLEETLTRLLPEARVLRVDRDSTRRKHALSEMLSAVHVGEVDILVGTQMLAKGHDFPN 559

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
             LV +LD D   F        R    L+Q  GRA R
Sbjct: 560 LTLVGVLDTDSALFSPDFRAAERLFAQLMQVAGRAGR 596


>gi|16551654|dbj|BAB71141.1| unnamed protein product [Homo sapiens]
          Length = 468

 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 12/132 (9%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ E+I   R G+ ++L+   +  EGLDI EC +V      + G + ++ +++Q  GR A
Sbjct: 213 EQKEVISKFRTGRINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEIAMVQARGR-A 266

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH---NINPQSVKEKIMEVIDPI 736
           R   S  +L A + +  I+    ET     +++ +   H   N+ P+    KI+E+    
Sbjct: 267 RADESTYVLVAHSGSGVIE---RETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQS 323

Query: 737 LLEDAATTNISI 748
           ++E    T  +I
Sbjct: 324 IMEKKMKTKRNI 335


>gi|308062783|gb|ADO04671.1| ATP-dependent DNA helicase RecG [Helicobacter pylori Cuz20]
          Length = 621

 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177
           N KI  P       N+S+ +  F     +  + DQ  AI ++   + S    + L++G  
Sbjct: 209 NAKIACP-------NNSERLKAFIASLPFQLTNDQQNAIKEIQSDLASPIACKRLIIGDV 261

Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           G GKT   +A ++ A     ++MAP  ILA QLY+E   F P
Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|119509852|ref|ZP_01628995.1| Type III restriction enzyme, res subunit [Nodularia spumigena
           CCY9414]
 gi|119465461|gb|EAW46355.1| Type III restriction enzyme, res subunit [Nodularia spumigena
           CCY9414]
          Length = 527

 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 16/126 (12%)

Query: 575 INLAAQQGLRILLTVLTKRM--------AEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           I L     LRIL  +L +          A++ T Y     + +  +  +    ER EI+ 
Sbjct: 316 IALGTDGKLRILANLLAEHFPERILIFTADNATVYSISEKLLIPAITHQTPVKERHEILT 375

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NV-N 683
             R G+++ LV  ++L EG+D+P   +  IL         S    +Q +GR  R  NV N
Sbjct: 376 KFREGEYNTLVASHVLNEGVDVPAASVAIILSGTG-----STREYVQRLGRVLRRGNVAN 430

Query: 684 SKVILY 689
            + ILY
Sbjct: 431 KRAILY 436


>gi|90021441|ref|YP_527268.1| transcription-repair coupling protein Mfd [Saccharophagus degradans
           2-40]
 gi|89951041|gb|ABD81056.1| transcription-repair coupling factor [Saccharophagus degradans
           2-40]
          Length = 1153

 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 8/127 (6%)

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY---SQMIVQLKIGDSVEQKELLSSL 312
           DRMR      L  +   IVV + S +    +  +Y   + ++V+    +++ +  LL+SL
Sbjct: 95  DRMR--CLYQLSNQAQAIVVVAASTLMQRLAPANYIIANSLVVEKN--ETINRDNLLTSL 150

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           +   Y+R D     G F + G  ++IFP      A+R+ +F ++++ I  F P T + + 
Sbjct: 151 INAGYQRVDTVFNHGEFAIRGALLDIFPMG-SSAAYRIELFDDEVDSIRTFDPETQRTVD 209

Query: 373 NVETIKI 379
            V  I++
Sbjct: 210 QVSKIEL 216


>gi|89114042|gb|ABD61612.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550

Query: 683 NSKVILYADTIT----KSIQL 699
              VIL A + T    +S+QL
Sbjct: 551 AYHVILVAPSYTSPTVESVQL 571


>gi|17510307|ref|NP_491112.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|14574398|gb|AAK68520.1|AC024810_19 Vasa- and belle-like helicase protein 1, isoform b, confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 644

 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 5/99 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TKR A +L  +L  + IR   +H ++K +ER   +   R G+  +LV   +   
Sbjct: 385 VLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAAR 444

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           GLDIP   +  +++ D  G        +  IGR  R  N
Sbjct: 445 GLDIPN--VRHVINYDLPG---DSDEYVHRIGRTGRCGN 478


>gi|290959824|ref|YP_003491006.1| transcriptional-repair coupling factor [Streptomyces scabiei 87.22]
 gi|260649350|emb|CBG72465.1| putative transcriptional-repair coupling factor [Streptomyces
           scabiei 87.22]
          Length = 1177

 Score = 45.1 bits (105), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 91/215 (42%), Gaps = 22/215 (10%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           + + F +A +     RP + +      A  L +  ++  P + V  + ++ +    E   
Sbjct: 38  AARPFAVAALARDAGRPVLAVTATGREAEDLAAALRSLLPPDGVVEYPAW-ETLPHERLS 96

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQM 293
           PR+DT   + + +     R+ H            +VV+ V  +      G+G +E     
Sbjct: 97  PRSDTVGRRLAVLR----RLTHPRPDDPETGPVSVVVAPVRSVLQPQVKGLGDLEP---- 148

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            V L+ G + +    + +L    Y R ++   RG F V G  +++FP   E+   RV  +
Sbjct: 149 -VALRTGGTADLNRTVEALAAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRVEFW 206

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           G+D+EEI  F      K+ +  ++++  +  +  P
Sbjct: 207 GDDVEEIRYF------KVADQRSLEVAEHGLWAPP 235


>gi|194910778|ref|XP_001982226.1| GG12488 [Drosophila erecta]
 gi|190656864|gb|EDV54096.1| GG12488 [Drosophila erecta]
          Length = 2249

 Score = 45.1 bits (105), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 551 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 605

Query: 683 NSKVILYADTITKSIQLAIDETTR 706
              VIL A T       A+  T R
Sbjct: 606 AYHVILVAPTYKSPTVGAVQLTDR 629


>gi|166368030|ref|YP_001660303.1| primosome assembly protein PriA [Microcystis aeruginosa NIES-843]
 gi|166090403|dbj|BAG05111.1| primosomal protein N' [Microcystis aeruginosa NIES-843]
          Length = 829

 Score = 45.1 bits (105), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 13/101 (12%)

Query: 591 TKRMAEDLT-EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+R+ ++LT E+   R +R     +  K   R E+++    G+FDVLVG  +L +GLDI 
Sbjct: 593 TQRVTQELTKEFPDLRCLRFDSDTTRNKNAPR-ELLKLFTDGEFDVLVGTQMLTKGLDID 651

Query: 650 ECGLVAILDADKEGFL---------RSKTSLIQTIGRAARN 681
              LV I+ AD  G L         R+  +L Q  GRA R 
Sbjct: 652 RVTLVGIMAAD--GLLYHSDYRASERAFQTLTQVAGRAGRG 690


>gi|114669826|ref|XP_001147663.1| PREDICTED: DEAD box polypeptide 42 protein isoform 5 [Pan
           troglodytes]
 gi|114669828|ref|XP_001147738.1| PREDICTED: DEAD box polypeptide 42 protein isoform 6 [Pan
           troglodytes]
 gi|114669830|ref|XP_001147818.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 7 [Pan
           troglodytes]
 gi|114669832|ref|XP_001147880.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 8 [Pan
           troglodytes]
          Length = 938

 Score = 45.1 bits (105), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612


>gi|89114040|gb|ABD61611.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 45.1 bits (105), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550

Query: 683 NSKVILYADTIT----KSIQL 699
              VIL A + T    +S+QL
Sbjct: 551 AYHVILVAPSYTSPTVESVQL 571


>gi|317477777|ref|ZP_07936970.1| primosomal protein N [Bacteroides sp. 4_1_36]
 gi|316906122|gb|EFV27883.1| primosomal protein N [Bacteroides sp. 4_1_36]
          Length = 821

 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 8/82 (9%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           II D + GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  G
Sbjct: 616 IISDFQQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRAYERAFQLMAQVAG 675

Query: 677 RAAR-NVNSKVILYADTITKSI 697
           RA R N   +V+L   +I   I
Sbjct: 676 RAGRKNKRGRVVLQTKSIDHPI 697


>gi|312863656|ref|ZP_07723894.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           vestibularis F0396]
 gi|311101192|gb|EFQ59397.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           vestibularis F0396]
          Length = 529

 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|308181071|ref|YP_003925199.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308046562|gb|ADN99105.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 447

 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 7/108 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+   TK   ++LT YL ++ + +  +H +++  ER  ++RD++  K+  +V  +L   
Sbjct: 247 VLIFANTKERVQELTHYLRQQGLTIAMIHGDIQPRERKRVMRDVQQLKYQFVVATDLAAR 306

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYA 690
           G+DI   G+  +++ D    L      I  +GR  RN    + + LY+
Sbjct: 307 GIDIE--GVSHVINDDIPNDLE---FFIHRVGRTGRNGMAGTAITLYS 349


>gi|307707477|ref|ZP_07643959.1| ATP-dependent DNA helicase RecG [Streptococcus mitis NCTC 12261]
 gi|307616429|gb|EFN95620.1| ATP-dependent DNA helicase RecG [Streptococcus mitis NCTC 12261]
          Length = 671

 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H ++K+ E+ +I+++ +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQEFKEQKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|296201782|ref|XP_002748184.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Callithrix jacchus]
          Length = 934

 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612


>gi|291406357|ref|XP_002719521.1| PREDICTED: DEAD box polypeptide 42 protein [Oryctolagus cuniculus]
          Length = 935

 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612


>gi|89114038|gb|ABD61610.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550

Query: 683 NSKVILYADTIT----KSIQL 699
              VIL A + T    +S+QL
Sbjct: 551 AYHVILVAPSYTSPTVESVQL 571


>gi|332975893|gb|EGK12770.1| DNA helicase RecG [Psychrobacter sp. 1501(2011)]
          Length = 748

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 9/102 (8%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DL+E L   +IR+  +H ++K  E+  ++   + G+ D+LV   ++  G+D+P   L+ I
Sbjct: 564 DLSERL---DIRIGMVHGKMKGAEKQAVMAAFKNGELDLLVATTVIEVGVDVPNASLMVI 620

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKS 696
            +A++ G     + L Q  GR  R       V+LY   ++++
Sbjct: 621 ENAERLGL----SQLHQLRGRVGRGSTKSFCVLLYQTPLSET 658


>gi|315045390|ref|XP_003172070.1| ATP-dependent RNA helicase ded1 [Arthroderma gypseum CBS 118893]
 gi|311342456|gb|EFR01659.1| ATP-dependent RNA helicase ded1 [Arthroderma gypseum CBS 118893]
          Length = 689

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+E+L  ++     +H +    ER   +   R G+  +LV   +   G
Sbjct: 469 LIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARG 528

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V  +      F  + T++    GR  R  N+ +
Sbjct: 529 LDIPNVTHVVTMT-----FPPTLTTMSTESGRTVRVGNTGI 564


>gi|301778305|ref|XP_002924562.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Ailuropoda
           melanoleuca]
          Length = 935

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612


>gi|297832974|ref|XP_002884369.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330209|gb|EFH60628.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 2033

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 10/97 (10%)

Query: 623  EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
            EI+ D R G  +++V  ++L EGLD+  C LV   D        +  S IQ+ GR AR  
Sbjct: 1084 EIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPAS-----NICSFIQSRGR-ARMQ 1137

Query: 683  NSKVILY---ADTITKS-IQLAIDETTRRREKQLEHN 715
            NS  ++     D +T+S ++  +    R RE+ L H+
Sbjct: 1138 NSDYLMMVESGDLLTQSRLKKYLSGGKRMREESLHHS 1174


>gi|288924465|ref|ZP_06418438.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
 gi|288344188|gb|EFC78744.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
          Length = 459

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 8/145 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   ED+ E L  R      ++ ++   +R ++I  LR G  D+LV  ++   
Sbjct: 260 MIIFVRTKSATEDVAERLRSRGFATEAINGDLGQPQREKLIAQLRDGALDLLVATDVAAR 319

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  + + +L      K +  AI+
Sbjct: 320 GLDVERVTHVVNYDIPTDPESYVHR----IGRTGRAGR--SGEALLLVTPREKGLLAAIE 373

Query: 703 ETTRRREKQLEHNKKHNINPQSVKE 727
           + TR+   ++E     ++N + V +
Sbjct: 374 KATRQPLAEMELPTAEDVNARRVAK 398


>gi|254384864|ref|ZP_05000200.1| transcriptional-repair coupling factor [Streptomyces sp. Mg1]
 gi|194343745|gb|EDX24711.1| transcriptional-repair coupling factor [Streptomyces sp. Mg1]
          Length = 1187

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 94/215 (43%), Gaps = 22/215 (10%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           + + F +A +    +R  + +      A  L +  ++  P + V  + S+ +    E   
Sbjct: 48  AARPFAIAALARRTERTVLAVTATGREAEDLAAALRSLLPPDEVAEYPSW-ETLPHERLS 106

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQM 293
           PR+DT   + + +     R+ H +          +VV+ +  +      G+G +     +
Sbjct: 107 PRSDTVGRRIAVLR----RLAHPSKDDPAAGPVSVVVAPIRSVLQPQVKGLGDL-----V 157

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            V L+ G+S +  E+  +L    Y R ++   RG F V G  +++FP   E+   RV  +
Sbjct: 158 PVSLRQGESADLGEVTQALAAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRVEFW 216

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           G+D+EEI  F      K+ +  ++++  +  +  P
Sbjct: 217 GDDVEEIRYF------KVADQRSLEVAEHGLWAPP 245


>gi|89114044|gb|ABD61613.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550

Query: 683 NSKVILYADTIT----KSIQL 699
              VIL A + T    +S+QL
Sbjct: 551 AYHVILVAPSYTSPTVESVQL 571


>gi|71276566|ref|ZP_00652840.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Dixon]
 gi|71900210|ref|ZP_00682349.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Ann-1]
 gi|71162637|gb|EAO12365.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Dixon]
 gi|71730043|gb|EAO32135.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa Ann-1]
          Length = 718

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +K  E+   +R  +  + DVLV   ++  G+D+P   L+ I +A++ G  
Sbjct: 542 GVRVGLVHGRMKAAEKQRTMRAFKCNEIDVLVATTVIEVGVDVPNASLMIIENAERLGL- 600

Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689
                L Q  GR  R   V+S V+LY
Sbjct: 601 ---AQLHQLRGRVGRGSVVSSCVLLY 623


>gi|296314303|ref|ZP_06864244.1| transcription-repair coupling factor [Neisseria polysaccharea ATCC
           43768]
 gi|296838999|gb|EFH22937.1| transcription-repair coupling factor [Neisseria polysaccharea ATCC
           43768]
          Length = 494

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 17/212 (8%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L S L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFNTETQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            V  I++     +    PT + A K  +   +
Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227


>gi|89114048|gb|ABD61615.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550

Query: 683 NSKVILYADTIT----KSIQL 699
              VIL A + T    +S+QL
Sbjct: 551 AYHVILVAPSYTSPTVESVQL 571


>gi|45446743|ref|NP_031398.2| ATP-dependent RNA helicase DDX42 [Homo sapiens]
 gi|45446747|ref|NP_987095.1| ATP-dependent RNA helicase DDX42 [Homo sapiens]
 gi|74750541|sp|Q86XP3|DDX42_HUMAN RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42; AltName: Full=RNA helicase-like protein;
           Short=RHELP; AltName: Full=RNA helicase-related protein;
           Short=RNAHP; AltName: Full=SF3b DEAD box protein;
           AltName: Full=Splicing factor 3B-associated 125 kDa
           protein; Short=SF3b125
 gi|29420431|dbj|BAC66466.1| RNA helicase-related protein [Homo sapiens]
 gi|62205357|gb|AAH93081.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Homo sapiens]
 gi|119614683|gb|EAW94277.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_b [Homo
           sapiens]
 gi|168277556|dbj|BAG10756.1| ATP-dependent RNA helicase DDX42 [synthetic construct]
          Length = 938

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612


>gi|194440585|dbj|BAG65665.1| vasa [Gryllus bimaculatus]
          Length = 650

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 5/107 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  + G + L+ V  KR A+ +  YL E+N     +H +    ER E + D + G+  +L
Sbjct: 460 LKEEGGDKTLVFVEMKRTADFIAAYLSEQNFPTTSIHGDRMQREREEALADFKSGQMTIL 519

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           V   +   GLDI     V   D  K     S    +  IGR  R  N
Sbjct: 520 VATAVAARGLDIKNVAHVVNYDLPK-----SIDEYVHRIGRTGRVGN 561


>gi|221053806|ref|XP_002258277.1| eukaryotic initiation factor [Plasmodium knowlesi strain H]
 gi|193808110|emb|CAQ38814.1| eukaryotic initiation factor, putative [Plasmodium knowlesi strain
           H]
          Length = 390

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   + LT+ + E N  V  MH+ +   ER +I+   R  KF VL+  ++   GLD+ E
Sbjct: 265 TKMKVDWLTKKMQEANFTVCKMHAGMSQSERDDIMLKFRQCKFRVLISTDIWGRGLDVQE 324

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        S+ S I  IGR+ R
Sbjct: 325 VSLVVNYDLPN-----SRESYIHRIGRSGR 349


>gi|166713265|ref|ZP_02244472.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 717

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +K  E+ + + D + G+ D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 541 GVRVALVHGRMKPAEKQQAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 599

Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689
                L Q  GR  R    +S V+LY
Sbjct: 600 ---AQLHQLRGRVGRGAAASSCVLLY 622


>gi|167382648|ref|XP_001736203.1| ATP-dependent RNA helicase DBP2 [Entamoeba dispar SAW760]
 gi|165901364|gb|EDR27447.1| ATP-dependent RNA helicase DBP2, putative [Entamoeba dispar SAW760]
          Length = 535

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 9/114 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V TKR A++L   L ++  RV  MH +    ER   + D + G  + L+  +L  
Sbjct: 400 KVLIFVKTKRSADNLCYKLRDQRYRVACMHGDKAQAERDRALSDFKSGAVNYLIATDLAS 459

Query: 644 EGLDIPECGLVAI--LDADKEGFLRSKTSLIQTIGRAARNVNSKVI---LYADT 692
            GLDI    +V    + +D E ++      I   GR  R+V  + I    YAD 
Sbjct: 460 RGLDIRNIEIVINYEMPSDIENYIHR----IGRTGRMGRSVEGEAISLFTYADA 509


>gi|160888490|ref|ZP_02069493.1| hypothetical protein BACUNI_00907 [Bacteroides uniformis ATCC 8492]
 gi|156862167|gb|EDO55598.1| hypothetical protein BACUNI_00907 [Bacteroides uniformis ATCC 8492]
          Length = 770

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 8/82 (9%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           II D + GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  G
Sbjct: 565 IISDFQQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRAYERAFQLMAQVAG 624

Query: 677 RAAR-NVNSKVILYADTITKSI 697
           RA R N   +V+L   +I   I
Sbjct: 625 RAGRKNKRGRVVLQTKSIDHPI 646


>gi|145331748|ref|NP_001078101.1| DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA
           binding / double-stranded RNA binding / helicase/
           nucleic acid binding / ribonuclease III [Arabidopsis
           thaliana]
 gi|332640404|gb|AEE73925.1| protein dicer-like 2 [Arabidopsis thaliana]
          Length = 1374

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 10/97 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI+ D R G  +++V  ++L EGLD+  C LV   D        +  S IQ+ GR AR  
Sbjct: 425 EIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPAS-----NICSFIQSRGR-ARMQ 478

Query: 683 NSKVILY---ADTITKS-IQLAIDETTRRREKQLEHN 715
           NS  ++     D +T+S +   +    R RE+ L+H+
Sbjct: 479 NSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHS 515


>gi|89114050|gb|ABD61616.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550

Query: 683 NSKVILYADTIT----KSIQL 699
              VIL A + T    +S+QL
Sbjct: 551 AYHVILVAPSYTSPTVESVQL 571


>gi|116617523|ref|YP_817894.1| transcription-repair coupling factor [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116096370|gb|ABJ61521.1| transcription-repair coupling factor [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 1179

 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 44/220 (20%), Positives = 99/220 (45%), Gaps = 22/220 (10%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QLLLGV G+ +  ++A +     RP ++++  ++ A Q + +  +      +E  V  Y+
Sbjct: 26  QLLLGVNGTARAASIAALYRKNPRPMLIISDTQVHADQFFDDLSSL-----LEDLV--YN 78

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG----IGS 286
           +   E+        I  E +I+    R++   T   L+    I+V  V+ + G    +  
Sbjct: 79  FPAEES--------IATEMAISSSELRLQRVQTLLALKTEKPIIV--VTSLAGAERLVPK 128

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            +S  Q  + +K+GD+     + ++L+   Y    +    G F   G  ++++P   +D 
Sbjct: 129 KQSLEQAHLHVKVGDAYNLNVIKNTLMMMGYTPTKLVQTPGEFAHRGSIVDVYPITFDD- 187

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
             R+  F ++++++  F   T +   + + I I   + ++
Sbjct: 188 PIRLDFFDDELDQLKSFDVATQKSTTSFDEINIEPATDFI 227



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 30/115 (26%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERI--------------------------EIIR 626
           ++  D  E    RN +V Y+H+ V  L+RI                           I+ 
Sbjct: 815 KIVRDAIEKEITRNGQVFYLHNRVADLDRIVSQIEELIPSARVAAIHGQMSETQLESILY 874

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           D   G++DVLV   ++  G+DIP    + + +AD  G       L Q  GR  R+
Sbjct: 875 DFLNGQYDVLVTTTIIETGVDIPNANTLIVENADHMGL----AQLYQLRGRVGRS 925


>gi|330004408|ref|ZP_08304929.1| helicase protein [Klebsiella sp. MS 92-3]
 gi|328536654|gb|EGF62977.1| helicase protein [Klebsiella sp. MS 92-3]
          Length = 525

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +  L  +  V  +R  + L   L ER +   +++ +     R   + +L  GK DVL+G 
Sbjct: 373 RHNLSCMTLVRHERHGQILKAMLGERGLVASFINGKSSAATRSAKLAELASGKIDVLIGS 432

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKS 696
            +L  G+D+P  G V I    K     ++  L Q +GR  R    K  V   AD +  S
Sbjct: 433 TILDVGVDVPSVGAVIIAGGGK-----AEVELRQRVGRGLRKKKGKANVCFIADFLDTS 486


>gi|320103927|ref|YP_004179518.1| type III restriction protein res subunit [Isosphaera pallida ATCC
           43644]
 gi|319751209|gb|ADV62969.1| type III restriction protein res subunit [Isosphaera pallida ATCC
           43644]
          Length = 514

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 16/146 (10%)

Query: 574 EINLAAQQGLRILLTVLTKRMAE--------DLTEYLYERNIRVRYMHSEVKTLERIEII 625
           EI LAA   +++L  +L +   +        + T Y   R   V  +  + KT ER E++
Sbjct: 367 EIALAAPAKIQLLRRLLDRHNGDRVLIFTHDNATVYQIAREFLVPVITHQTKTKERHEVL 426

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R G + VL    +L EG+++PE  +  +L     G +R     +Q +GR  R    K
Sbjct: 427 TKFRQGVYPVLATSRVLNEGVNVPEANVGIVLSGT--GTVREH---VQRLGRILRKAADK 481

Query: 686 VILYADTITKSIQLAIDETTRRREKQ 711
             +  + +T+     ++E T  R +Q
Sbjct: 482 EAILYEVVTRG---TVEEFTSNRRRQ 504


>gi|308064280|gb|ADO06167.1| ATP-dependent DNA helicase RecG [Helicobacter pylori Sat464]
          Length = 621

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177
           N KI  P       N+S+ +  F     +  + DQ  AI ++   + S    + L++G  
Sbjct: 209 NAKIACP-------NNSERLKAFIASLPFQLTNDQQNAIKEIQSDLASPIACKRLIIGDV 261

Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           G GKT   +A ++ A     ++MAP  ILA QLY+E   F P
Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|254820583|ref|ZP_05225584.1| type III restriction enzyme, res subunit [Mycobacterium
           intracellulare ATCC 13950]
          Length = 1033

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 11/130 (8%)

Query: 564 ARTQV--EDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ART++  +++ D++ ++AA +GL   +++   R   D         +  R + ++    E
Sbjct: 533 ARTRIVLKELRDKVADVAAMRGLGFCVSIEHARYMAD---RFNSGGVPARAVSADTLVAE 589

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R   ++ LR  + ++L  ++L  EGLDIPE   V  L   +     S T  +Q +GR  R
Sbjct: 590 RAAALKALRDREINILFAVDLFNEGLDIPEVDTVLFLRPTE-----SATVFLQQLGRGLR 644

Query: 681 NVNSKVILYA 690
               K +L A
Sbjct: 645 LTAGKTVLTA 654


>gi|239638083|ref|ZP_04679042.1| phage DNA/RNA helicase [Staphylococcus warneri L37603]
 gi|239596366|gb|EEQ78904.1| phage DNA/RNA helicase [Staphylococcus warneri L37603]
          Length = 472

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 37/76 (48%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            G + +L   +   ++D+ E      I   +  ++    ER +I+ D + G   VL  ++
Sbjct: 218 NGQKTILYAHSVEASKDIAEQFKLNGINAAHADAKTNIKERTQIMEDFKKGAIKVLCNVD 277

Query: 641 LLREGLDIPECGLVAI 656
           L+ EG D+P+C  V +
Sbjct: 278 LISEGFDVPDCTCVIL 293


>gi|254579254|ref|XP_002495613.1| ZYRO0B15576p [Zygosaccharomyces rouxii]
 gi|238938503|emb|CAR26680.1| ZYRO0B15576p [Zygosaccharomyces rouxii]
          Length = 491

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 40/73 (54%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L +   +V  +H ++++ ER  +I D R G+  VL+  N+L  G
Sbjct: 343 IIFVSTKKTANLLYARLKQEGHQVSILHGDLQSKERDRLIDDFREGRSKVLITTNVLARG 402

Query: 646 LDIPECGLVAILD 658
           +DIP   +V   D
Sbjct: 403 IDIPTVSMVVNYD 415


>gi|212007716|gb|ACJ22452.1| putative eukaryotic translation initiation factor 4A [Porphyra
           yezoensis]
          Length = 408

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y+ +N+        ++   T+R  E L   + ER+  V  +H ++   +R  I+R+ R
Sbjct: 284 DLYETLNITQS-----IIYTNTRRKVEWLVAKMNERDFTVSSLHGDMDQKDRDIIMREFR 338

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  +LL  G+D+ +  LV   D        +K + I  IGR+ R
Sbjct: 339 TGSTRVLITTDLLARGIDVQQVSLVVNYDLPT-----NKENYIHRIGRSGR 384


>gi|154293477|ref|XP_001547268.1| hypothetical protein BC1G_13890 [Botryotinia fuckeliana B05.10]
 gi|150845271|gb|EDN20464.1| hypothetical protein BC1G_13890 [Botryotinia fuckeliana B05.10]
          Length = 636

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 7/121 (5%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE  S R  + D+     L +    R ++ V TKR A+++ +YL+  ++    +HS+   
Sbjct: 401 VEAASKRQALYDL-----LLSTPPARTIIFVNTKRSADEIDDYLFNNDLPCTSIHSDRTQ 455

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIG 676
            ER + IR  R GK  +L+   +   GLD+     V   D  ++  G +   T  I   G
Sbjct: 456 REREDSIRAFRNGKMPILIATGVSARGLDVHNVMHVINFDLPSNDHGGIEEYTHRIGRTG 515

Query: 677 R 677
           R
Sbjct: 516 R 516


>gi|109116835|ref|XP_001116381.1| PREDICTED: ATP-dependent RNA helicase DDX42-like isoform 5 [Macaca
           mulatta]
 gi|109116837|ref|XP_001116390.1| PREDICTED: ATP-dependent RNA helicase DDX42-like isoform 6 [Macaca
           mulatta]
          Length = 937

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612


>gi|115451605|ref|NP_001049403.1| Os03g0219700 [Oryza sativa Japonica Group]
 gi|122247355|sp|Q10PV9|RH47B_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 47B
 gi|108706885|gb|ABF94680.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113547874|dbj|BAF11317.1| Os03g0219700 [Oryza sativa Japonica Group]
 gi|125542928|gb|EAY89067.1| hypothetical protein OsI_10553 [Oryza sativa Indica Group]
 gi|125585426|gb|EAZ26090.1| hypothetical protein OsJ_09947 [Oryza sativa Japonica Group]
 gi|215701156|dbj|BAG92580.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 573

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           +D+   L  R ++   +H ++  L R  +++  + G+F VLV   L   GLD+PEC LV 
Sbjct: 445 KDVVFKLEARGMKATELHGDLGKLARSTVLKKFKDGEFRVLVTNELSARGLDVPECDLVI 504

Query: 656 ILD 658
            LD
Sbjct: 505 NLD 507


>gi|313668421|ref|YP_004048705.1| transcription-repair coupling factor [Neisseria lactamica ST-640]
 gi|313005883|emb|CBN87339.1| transcription-repair coupling factor [Neisseria lactamica 020-06]
          Length = 1164

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 17/212 (8%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L S L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            V  I++     +    PT + A K  +   +
Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227


>gi|311266965|ref|XP_003131337.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
           DDX42-like [Sus scrofa]
          Length = 941

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612


>gi|294668401|ref|ZP_06733504.1| hypothetical protein NEIELOOT_00319 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309719|gb|EFE50962.1| hypothetical protein NEIELOOT_00319 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 295

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E L   L E NI +  +H  +K  E+ E++ +   G+ +VLV   ++  G+D+P   L+ 
Sbjct: 111 EQLQAALPELNIGL--VHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMV 168

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I  A++ G       L Q  GR  R       V+L+A+ +++
Sbjct: 169 IEHAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPLSE 206


>gi|258571293|ref|XP_002544450.1| eukaryotic initiation factor 4A-12 [Uncinocarpus reesii 1704]
 gi|237904720|gb|EEP79121.1| eukaryotic initiation factor 4A-12 [Uncinocarpus reesii 1704]
          Length = 399

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 357


>gi|110834556|ref|YP_693415.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2]
 gi|110647667|emb|CAL17143.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
           borkumensis SK2]
          Length = 551

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 4/130 (3%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A++   +L+ V TK+   +L E L  R +R   ++ ++   +R + ++ L+  +FD+L
Sbjct: 241 LEAEEHDAVLVFVRTKQATLELAEQLNRRGLRAEALNGDIPQQQREKTVQRLKDKRFDLL 300

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  +++  GLD+P   +  +++ D  G   +    I   GRA R  ++  IL+     + 
Sbjct: 301 IATDVVARGLDVPR--ITHVVNYDMPGDPEAYVHRIGRTGRAGRQGDA--ILFVARREQH 356

Query: 697 IQLAIDETTR 706
           +   I+  TR
Sbjct: 357 VLRQIERITR 366


>gi|94450856|gb|ABF19798.1| dicer-like 2 spliceform 2 [Arabidopsis thaliana]
          Length = 1374

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 10/97 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI+ D R G  +++V  ++L EGLD+  C LV   D        +  S IQ+ GR AR  
Sbjct: 425 EIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPAS-----NICSFIQSRGR-ARMQ 478

Query: 683 NSKVILY---ADTITKSIQLA-IDETTRRREKQLEHN 715
           NS  ++     D +T+S  +  +    R RE+ L+H+
Sbjct: 479 NSDYLMMVESGDLLTQSRSMKYLSGGKRMREESLDHS 515


>gi|91206663|sp|Q2UAK1|FAL1_ASPOR RecName: Full=ATP-dependent RNA helicase fal1
 gi|83771282|dbj|BAE61414.1| unnamed protein product [Aspergillus oryzae]
          Length = 398

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 256 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 310

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R
Sbjct: 311 QGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGR 356


>gi|193784152|dbj|BAG53696.1| unnamed protein product [Homo sapiens]
          Length = 484

 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 47  VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 106

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 107 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 158


>gi|120537661|gb|AAI29276.1| Vasa protein [Danio rerio]
          Length = 688

 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A    R ++ V TKR A+ +  +L +  I    +H + +  ER + + D RLG+  VL
Sbjct: 496 LRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGQCPVL 555

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           V  ++   GLDI +   V   D        S    +  IGR  R  N+
Sbjct: 556 VATSVAARGLDIEQVQHVVNFD-----MPSSIDEYVHRIGRTGRCGNT 598


>gi|194367028|ref|YP_002029638.1| ATP-dependent DNA helicase RecG [Stenotrophomonas maltophilia
           R551-3]
 gi|194349832|gb|ACF52955.1| ATP-dependent DNA helicase RecG [Stenotrophomonas maltophilia
           R551-3]
          Length = 703

 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 16/138 (11%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDL----TEYLYER------NIRVRYMHSEVKTL 619
           ++ + I LA Q+G ++         +E+L     +  YE        +RV  +H  +K  
Sbjct: 481 ELIERIALACQEGRQVYWVCTLIEESEELDATPAQATYESLQALLPGVRVGLVHGRLKAA 540

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++  +   + G+ D+LV   ++  G+D+P   L+ I +A++ G       L Q  GR  
Sbjct: 541 EKLATMVAFKAGEIDLLVATTVIEVGVDVPNASLMVIENAERLGL----AQLHQLRGRVG 596

Query: 680 RN--VNSKVILYADTITK 695
           R   V+  V+LY   +++
Sbjct: 597 RGSAVSRCVLLYQAPLSQ 614


>gi|6320539|ref|NP_010619.1| Irc3p [Saccharomyces cerevisiae S288c]
 gi|74676421|sp|Q06683|IRC3_YEAST RecName: Full=Putative ATP-dependent helicase IRC3; AltName:
           Full=Increased recombination centers protein 3
 gi|914990|gb|AAB64767.1| Ydr332wp [Saccharomyces cerevisiae]
 gi|151942308|gb|EDN60664.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|190404727|gb|EDV07994.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
 gi|207346435|gb|EDZ72928.1| YDR332Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259145569|emb|CAY78833.1| Irc3p [Saccharomyces cerevisiae EC1118]
 gi|285811350|tpg|DAA12174.1| TPA: Irc3p [Saccharomyces cerevisiae S288c]
 gi|323338244|gb|EGA79477.1| Irc3p [Saccharomyces cerevisiae Vin13]
          Length = 689

 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           LL  + K   + L +   +  I   Y+ S+ K +ER  II+  + G+ +VL+   +  EG
Sbjct: 282 LLFGVDKAHVQSLHKLFKDNGINTDYVTSDTKQIERDNIIQKFKNGETEVLMNCGIFTEG 341

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D+P    + +    K     S++ LIQ IGR  R  +SK
Sbjct: 342 TDMPNIDCILLCRPTK-----SRSLLIQMIGRGLRLHHSK 376


>gi|17510309|ref|NP_491113.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|7332077|gb|AAF60764.1| Vasa- and belle-like helicase protein 1, isoform a, confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 641

 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 5/99 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TKR A +L  +L  + IR   +H ++K +ER   +   R G+  +LV   +   
Sbjct: 382 VLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAAR 441

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           GLDIP   +  +++ D  G        +  IGR  R  N
Sbjct: 442 GLDIPN--VRHVINYDLPG---DSDEYVHRIGRTGRCGN 475


>gi|33865711|ref|NP_897270.1| transcriptional-repair coupling factor [Synechococcus sp. WH 8102]
 gi|33632881|emb|CAE07692.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 8102]
          Length = 1192

 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 27/179 (15%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK GD ++  EL  +L +  Y+R       GT+   GD ++I+P   E +  R+  FG +
Sbjct: 145 LKKGDELDLDELAETLARLGYERMSTIDQEGTWSRRGDIVDIYPVSSE-LPVRLEFFGEE 203

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           ++++ EF P T + +  V+ +++       TP          ++E +       E   RL
Sbjct: 204 LDKLREFDPATQRSLDPVDRLQL-------TPTGFSPLVADQLRESMP------EGLDRL 250

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           L  +  E       E+LE  G+ + +    R L G   G+ P  L +Y+P  + + +DE
Sbjct: 251 LGDEATE-------ELLE-GGTPEGL----RRLMGLAWGQ-PACLLDYLPASAAVVIDE 296


>gi|325120651|emb|CBZ56206.1| DEAD-box ATP-dependent RNA helicase 34, related [Neospora caninum
           Liverpool]
          Length = 411

 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT  + ER+  V  MH ++    R  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 286 TRRKVDFLTSKMSERDFTVSSMHGDMDQKSREMIMREFRSGSTRVLITTDLLARGIDVQQ 345

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
             LV   D  A KE +       I  IGR+ R
Sbjct: 346 VSLVINYDLPATKENY-------IHRIGRSGR 370


>gi|300088556|ref|YP_003759078.1| primosomal protein N' [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528289|gb|ADJ26757.1| primosomal protein N' [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 808

 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIG 676
           I  D R G+ D+L+G  ++  GLD+P  GLV +++AD    L       R+   L Q  G
Sbjct: 609 IFDDFRSGRADILIGTQVVARGLDLPGVGLVGVVNADTSLNLPDFRSAERTFQLLAQVAG 668

Query: 677 RAARN 681
           RA R 
Sbjct: 669 RAGRG 673


>gi|289705870|ref|ZP_06502250.1| putative ATP-dependent DNA helicase RecG [Micrococcus luteus SK58]
 gi|289557413|gb|EFD50724.1| putative ATP-dependent DNA helicase RecG [Micrococcus luteus SK58]
          Length = 730

 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  +   E+   ++    G  DVLV   ++  G+D+P   ++AILDAD  G  
Sbjct: 544 GLRIDAVHGRMDQAEQDAAMQAFARGATDVLVATTVIEVGVDVPNATVMAILDADDFGL- 602

Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690
              ++L Q  GR  R   + V L A
Sbjct: 603 ---STLHQLRGRVGRGPGAAVCLLA 624


>gi|288906074|ref|YP_003431296.1| ATP-dependent DNA helicase RecG [Streptococcus gallolyticus UCN34]
 gi|306832113|ref|ZP_07465267.1| DNA helicase RecG [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|288732800|emb|CBI14376.1| ATP-dependent DNA helicase RecG [Streptococcus gallolyticus UCN34]
 gi|304425552|gb|EFM28670.1| DNA helicase RecG [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 671

 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L+ Y +  +  V  MH  +K  E+  I++D +  K  VLV   ++  G+++P   ++ 
Sbjct: 486 EELSAY-FADSATVALMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMI 544

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           I+DAD+ G     + L Q  GR  R +  S  IL A+  T++
Sbjct: 545 IMDADRFGL----SQLHQLRGRVGRGDKQSYAILVANPKTQT 582


>gi|312197808|ref|YP_004017869.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
 gi|311229144|gb|ADP81999.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
          Length = 566

 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 8/145 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   ED+ E L  R      ++ ++   +R ++I  LR G  D+LV  ++   
Sbjct: 250 MIIFVRTKSATEDVAERLRSRGFATEAINGDLSQPQREKLIAQLRDGTLDLLVATDVAAR 309

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  + + +L      K +  AI+
Sbjct: 310 GLDVERITHVVNYDIPTDPESYVHR----IGRTGRAGR--SGEALLLVTPREKGLLAAIE 363

Query: 703 ETTRRREKQLEHNKKHNINPQSVKE 727
           + TR+   ++E     ++N + V +
Sbjct: 364 KATRQPLTEMELPTPADVNARRVAK 388


>gi|240139571|ref|YP_002964047.1| putative helicase domain protein with DEAD/DEAH motif
           [Methylobacterium extorquens AM1]
 gi|240009544|gb|ACS40770.1| putative helicase domain protein with DEAD/DEAH motif
           [Methylobacterium extorquens AM1]
          Length = 373

 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 11/117 (9%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A  + + +    I    + +E    ER  ++RD R GK   LV + +L  G ++PE  L+
Sbjct: 86  AASVRDAIRAEGISCETVTAETGKRERDRMVRDFRAGKIRCLVSVGVLSTGFNVPEVDLI 145

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYADTITKSIQLAIDETTRR 707
           A+L   +   L      +Q +GRA R    K    V+ YA  +   +   +D  T R
Sbjct: 146 ALLRPTQSAGL-----YVQQVGRALRRAPGKSDAIVLDYAGLV--RMHGPVDAVTAR 195


>gi|19387221|gb|AAL87141.1|AF479822_1 DEAD box RNA helicase Vasa [Oryzias latipes]
          Length = 396

 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 214 RTMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKALADFRSGKCPVLVATSVAS 273

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDIP+   V   D        +    +  IGR  R  N+
Sbjct: 274 RGLDIPDVQHVVNFD-----LPNTIDDYVHRIGRTGRCGNT 309


>gi|58580774|ref|YP_199790.1| ATP-dependent DNA helicase RecG [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425368|gb|AAW74405.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 717

 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +K  E+ + + D + G+ D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 541 GVRVALVHGRMKPAEKQQAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 599

Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689
                L Q  GR  R    +S V+LY
Sbjct: 600 ---AQLHQLRGRVGRGAAASSCVLLY 622


>gi|330829254|ref|YP_004392206.1| DEAD/DEAH box helicase domain-containing protein [Aeromonas veronii
           B565]
 gi|328804390|gb|AEB49589.1| DEAD/DEAH box helicase domain protein [Aeromonas veronii B565]
          Length = 633

 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 11/154 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK  AE+L   L  R      +H ++    R   +  LR G+ D+L+  +++  
Sbjct: 250 LLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVAR 309

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R    + IL+     + +  AI+
Sbjct: 310 GLDVERITHVVNYDIPYDTESYVHR----IGRTGRAGR--KGEAILFVAPRERRMLRAIE 363

Query: 703 ETTRRREKQLEHNKKHNINPQSV---KEKIMEVI 733
             TR+  + ++     +IN   +   KE+I E +
Sbjct: 364 HATRQAIEPMKMPSTEDINQHRLAKFKERIRETM 397


>gi|322373478|ref|ZP_08048014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
 gi|321278520|gb|EFX55589.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
          Length = 528

 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|302534662|ref|ZP_07287004.1| ATP-dependent helicase [Streptomyces sp. C]
 gi|302443557|gb|EFL15373.1| ATP-dependent helicase [Streptomyces sp. C]
          Length = 1038

 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A + +R L   ++   A+ + ++  +   +   +  E     R   + DLR G+ +V+  
Sbjct: 550 APEAMRALGFCVSVAHAQFMADFFNQAGFQAVALSGETPRPTRKAALDDLRAGRLNVIFS 609

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           ++L  EGLD+P+   + +L         S T  +Q +GR  R   +K +L
Sbjct: 610 VDLFNEGLDVPDVDTLLLLRPTS-----SATVFLQQLGRGLRRSANKPVL 654


>gi|225075727|ref|ZP_03718926.1| hypothetical protein NEIFLAOT_00743 [Neisseria flavescens
           NRL30031/H210]
 gi|224952998|gb|EEG34207.1| hypothetical protein NEIFLAOT_00743 [Neisseria flavescens
           NRL30031/H210]
          Length = 577

 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 17/208 (8%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ +   
Sbjct: 37  VVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ--- 92

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            ++  A        D + V   + +  +  V   +     LK G +++   L S LV   
Sbjct: 93  -IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDAG 144

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  
Sbjct: 145 YNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVSE 203

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELK 404
           I++     +    PT + A K  +   +
Sbjct: 204 IRLLPAHEF----PTDSEAQKIFRSRFR 227


>gi|225024978|ref|ZP_03714170.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC
           23834]
 gi|224942208|gb|EEG23417.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC
           23834]
          Length = 431

 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M+E L + LYE+      +H ++    R   + DLR G+  VLV  ++   G+D+P 
Sbjct: 255 TKAMSEQLADELYEKGFAANCLHGDMPQNWRNRTLMDLRKGRIKVLVATDVAARGIDVPS 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              V   D  K+         +  IGR  R
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGR 339


>gi|146304120|ref|YP_001191436.1| type III restriction enzyme, res subunit [Metallosphaera sedula DSM
           5348]
 gi|145702370|gb|ABP95512.1| type III restriction enzyme, res subunit [Metallosphaera sedula DSM
           5348]
          Length = 660

 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV+ +  E+   ER++I+ + + G  DV++  ++  EG+DIPE  L+ + D  K     S
Sbjct: 321 RVKTLTGELNKEERLQIVNEAKSGNVDVIISTHVGEEGIDIPEARLLIMTDVPK-----S 375

Query: 668 KTSLIQTIGRAARNVNSKVILY 689
                Q +GR  R   SK + Y
Sbjct: 376 PLRFYQRLGRLIRKSESKGVKY 397


>gi|117621384|ref|YP_857155.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117562791|gb|ABK39739.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 642

 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 11/154 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK  AE+L   L  R      +H ++    R   +  LR G+ D+L+  +++  
Sbjct: 261 LLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVAR 320

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R    + IL+     + +  AI+
Sbjct: 321 GLDVERITHVVNYDIPYDTESYVHR----IGRTGRAGR--KGEAILFVAPRERRMLRAIE 374

Query: 703 ETTRRREKQLEHNKKHNINPQSV---KEKIMEVI 733
             TR+  + ++     +IN   +   KE+I E +
Sbjct: 375 HATRQAIEPMKMPSTEDINQHRLAKFKERIRETM 408


>gi|157119649|ref|XP_001653435.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108875244|gb|EAT39469.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 911

 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I++ V TK+  EDL + +         +H +    ER  +++D R GK  +LV  ++  
Sbjct: 480 KIIIFVETKKKVEDLLKNIVRDGYGATSIHGDKSQSERDYVLQDFRHGKSTILVATDVAA 539

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     +  S    I  IGR  R
Sbjct: 540 RGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGR 571


>gi|332243110|ref|XP_003270725.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Nomascus leucogenys]
          Length = 938

 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612


>gi|330466258|ref|YP_004404001.1| ATP-dependent DNA helicase RecG [Verrucosispora maris AB-18-032]
 gi|328809229|gb|AEB43401.1| ATP-dependent DNA helicase RecG [Verrucosispora maris AB-18-032]
          Length = 734

 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  +   E+  ++R    G+ DVLV   ++  G+D+P   ++ +LDAD+ G  
Sbjct: 550 GLRIGVLHGRLPADEKDAVMRSFANGELDVLVATTVVEVGVDVPNATMMVVLDADRFGV- 608

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKS 696
              + L Q  GR  R     + L     T+ 
Sbjct: 609 ---SQLHQLRGRVGRGSAPGLCLLVTEATEG 636


>gi|255951308|ref|XP_002566421.1| Pc22g25350 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593438|emb|CAP99823.1| Pc22g25350 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1109

 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 15/123 (12%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYL--YERNIR--VRYMHSEVKTLE------RIEII 625
           N  +Q   R+++ V  +  AE++T  L  YE  IR  V    S  K  E      +++II
Sbjct: 663 NGTSQPATRVMIFVHFRDSAEEVTRVLKRYEPMIRPHVFVGQSSAKGSEGMDQKTQLKII 722

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D + G ++ +V  ++  EGLDI E  L+   D+       S   ++Q +GR  R     
Sbjct: 723 EDFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSA-----SPIRMLQRMGRTGRKRAGN 777

Query: 686 VIL 688
           + L
Sbjct: 778 ITL 780


>gi|206725493|ref|NP_001126368.1| ATP-dependent RNA helicase DDX42 [Pongo abelii]
          Length = 942

 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612


>gi|326634444|pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
 gi|326634446|pdb|3PEX|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
 gi|326634450|pdb|3PEZ|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
           And Adp
          Length = 395

 Score = 44.7 bits (104), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L      V  +H +++T ER  +I D R G+  VL+  N+L  G
Sbjct: 247 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 306

Query: 646 LDIPECGLVAILD----ADKEGFLRSKTSLIQTIGRAAR 680
           +DIP   +V   D    A+ +       + I  IGR  R
Sbjct: 307 IDIPTVSMVVNYDLPTLANGQA---DPATYIHRIGRTGR 342


>gi|157691224|ref|YP_001485686.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
 gi|157679982|gb|ABV61126.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
          Length = 513

 Score = 44.7 bits (104), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 4/118 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LTE L  R      +H ++   +R+  +R  + G  DVLV  ++   GLDI  
Sbjct: 267 TKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLVATDVAARGLDI-- 324

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
            G+  + + D      S    I   GRA R      + +     K +  AI++TT+R+
Sbjct: 325 SGVTHVYNFDVPQDPESYVHRIGRTGRAGR--TGMAMTFITPREKDMLRAIEQTTKRK 380


>gi|153000915|ref|YP_001366596.1| transcription-repair coupling factor [Shewanella baltica OS185]
 gi|151365533|gb|ABS08533.1| transcription-repair coupling factor [Shewanella baltica OS185]
          Length = 1162

 Score = 44.7 bits (104), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 25/216 (11%)

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQ 315
           R+   +  S +E+N  IV+  V+ +      ++Y S  +  LK GDS +  ++   L   
Sbjct: 96  RLETLSQLSQIEQN--IVIVPVTTLMMRLPPKAYLSANVFVLKKGDSYKLHDVRQHLTDT 153

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y   +     G F + G  ++IFP+ + ++  R+ +F  ++E I  F P T + ++ V+
Sbjct: 154 GYHSVEQVYEHGEFAIRGSILDIFPTGM-NMPLRIELFDEEVETIRHFDPETQRSLQPVD 212

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
           +I++     +    PT ++A++  ++  + R   + K     E + + Q ++  L     
Sbjct: 213 SIRLLPAKEF----PTDSSAIEGFRQRYRRRFEVIVK-----EPESVYQLVSRSL----- 258

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                 IENY          +   TLF+Y+P+D+ L
Sbjct: 259 --MPAGIENYLPLFF-----DDTATLFDYLPKDTQL 287


>gi|332671921|ref|YP_004454929.1| type III restriction protein res subunit [Cellulomonas fimi ATCC
           484]
 gi|332340959|gb|AEE47542.1| type III restriction protein res subunit [Cellulomonas fimi ATCC
           484]
          Length = 1029

 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           AR  +++V    N+A  +GL   ++V   R    + E+     I    +  +    +R +
Sbjct: 531 ARRVIKEVAARANVATLRGLGFCVSVQHARF---MAEHFNRHGIAAVAVWGDSPRSDREQ 587

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +RDL  G+  VL  ++L  EG+D+P+   + +L   +     S T  +Q +GR  R   
Sbjct: 588 ALRDLASGRIRVLFSVDLFNEGVDVPDVDTILMLRPTE-----SPTLFLQQLGRGLRKTP 642

Query: 684 SK 685
            K
Sbjct: 643 HK 644


>gi|328768329|gb|EGF78376.1| eIF4AIII protein [Batrachochytrium dendrobatidis JAM81]
          Length = 445

 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LTE + E N  V  MH E+   ER  I+++ R
Sbjct: 272 DLYDTLTIT-----QAVIFCNTRRKVDWLTEKMREANFTVAAMHGEMPQKERDAIMQEFR 326

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 327 SGASRVLITTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 372


>gi|322516252|ref|ZP_08069184.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC
           49124]
 gi|322125316|gb|EFX96681.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC
           49124]
          Length = 528

 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|229829117|ref|ZP_04455186.1| hypothetical protein GCWU000342_01202 [Shuttleworthia satelles DSM
           14600]
 gi|229792280|gb|EEP28394.1| hypothetical protein GCWU000342_01202 [Shuttleworthia satelles DSM
           14600]
          Length = 683

 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 124/297 (41%), Gaps = 44/297 (14%)

Query: 523 PTTIVVSATPGSWELEQ-CQGIIVEQIIR--PTG---LVDPPVEIRSARTQVEDVYDEIN 576
           P  +V+SATP    L     G +   +IR  P+G   + +  +     ++  + V  E+ 
Sbjct: 407 PNVLVMSATPIPRTLAMILYGDMNLSVIRELPSGRRKIKNAIIRSDKKKSAWQFVAREV- 465

Query: 577 LAAQQGLRILLTVLTKRMAED--LTEY------LYERNIRVRYMHSEVKTLERIEIIRDL 628
           LA +Q   I   +    ++ED  + +Y       Y   I V  +H  +K+ ++ +++ D 
Sbjct: 466 LAGRQAYVICPLIEASDVSEDENVMDYAQALKDFYGDQITVGLLHGRMKSKDKDKVMEDF 525

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             GK  VLV   ++  G+++P   ++ I +A++ G       L Q  GR  R  +    +
Sbjct: 526 ASGKIQVLVSTTVVEVGVNVPNASVMLIENANRFGL----AQLHQLRGRVGRGADQAYCI 581

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK-------IMEVIDPILLEDA 741
           + D+         +E +RR E  +  N    I  + +K +       I +  D     D 
Sbjct: 582 FIDSSDS------EEISRRLEILVHSNDGFAIASEDLKLRGPGDFFGIRQSGDL----DF 631

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
              +I  DA  L ++ +  K  L+        A   L FEE A IR  ++R +   Y
Sbjct: 632 KIADIYQDADVLQMASEDSKEILE--------ADPRLVFEEHAGIRSFLERRRQEVY 680


>gi|188994014|ref|YP_001928266.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC
           33277]
 gi|188593694|dbj|BAG32669.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC
           33277]
          Length = 427

 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 9/104 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++    K    +LT  L +    V  MHS+++  +R +++RD + G  DVLV  +++ 
Sbjct: 246 RTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVDVLVATDIVA 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSK 685
            G+DI    +V   D   D E +       +  IGR AR  N +
Sbjct: 306 RGIDIDNIRVVINYDIPHDPEDY-------VHRIGRTARGTNGE 342


>gi|188578256|ref|YP_001915185.1| ATP-dependent DNA helicase RecG [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188522708|gb|ACD60653.1| ATP-dependent DNA helicase RecG [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 717

 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +K  E+ + + D + G+ D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 541 GVRVALVHGRMKPAEKQQAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 599

Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689
                L Q  GR  R    +S V+LY
Sbjct: 600 ---AQLHQLRGRVGRGAAASSCVLLY 622


>gi|75061727|sp|Q5R7D1|DDX42_PONAB RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|55731230|emb|CAH92329.1| hypothetical protein [Pongo abelii]
          Length = 942

 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612


>gi|66363178|ref|XP_628555.1| eIF4A-1; eukaryotic translation initiation factor 4A-1; RNA SFII
           helicase [Cryptosporidium parvum Iowa II]
 gi|46229820|gb|EAK90638.1| eIF4A-1; eukaryotic translation initiation factor 4A-1; RNA SFII
           helicase [Cryptosporidium parvum Iowa II]
          Length = 396

 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 24/133 (18%)

Query: 560 EIRSARTQVE----------DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           +IR    QVE          D+YD + +        ++   TK   E L++ + E +  V
Sbjct: 235 KIRQYHVQVEEEKWKFETLCDLYDTLTVTQS-----IIFCNTKNKVEWLSKKMMENHFTV 289

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRS 667
            ++H ++  + R EI+R+ R GK  VL+  +L   G+D+ +  LV   D   +KE +   
Sbjct: 290 SFVHGDLPQVTREEILREFREGKTRVLITTDLWGRGIDVQQVNLVVNYDLPINKELY--- 346

Query: 668 KTSLIQTIGRAAR 680
               I  IGR+ R
Sbjct: 347 ----IHRIGRSGR 355


>gi|325107412|ref|YP_004268480.1| transcription-repair coupling factor [Planctomyces brasiliensis DSM
           5305]
 gi|324967680|gb|ADY58458.1| transcription-repair coupling factor [Planctomyces brasiliensis DSM
           5305]
          Length = 1114

 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 65/128 (50%), Gaps = 4/128 (3%)

Query: 255 IDRMRHSATRSLLERND---CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           + R+  +   +L ER     C+V S  + +  + S +   +    LK+GD ++ +E    
Sbjct: 120 LKRLHQAGDETLPERPAFPRCLVTSIEALLQPVPSHQQLREFTRTLKVGDELDLEEWSHW 179

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV++ ++R     + G F + G  +++FP+       R+ +FG+++E I  F   + +KI
Sbjct: 180 LVERGFERTTAIELPGEFAIHGGILDLFPTD-SLAPLRIELFGDEVESIRTFDVESQRKI 238

Query: 372 RNVETIKI 379
             ++ +++
Sbjct: 239 DTLKQVQL 246


>gi|195355988|ref|XP_002044465.1| GM11962 [Drosophila sechellia]
 gi|194131630|gb|EDW53672.1| GM11962 [Drosophila sechellia]
          Length = 946

 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I  +   G +I++ V TK   ED+ + +         +H +    ER  +++D R GK +
Sbjct: 485 IKKSGSNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSN 544

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +L+  ++   GLD+ +   V   D     +  S  + +  IGR  R
Sbjct: 545 ILIATDVASRGLDVEDLQYVINYD-----YPNSSENYVHRIGRTGR 585


>gi|156098189|ref|XP_001615127.1| eukaryotic initiation factor [Plasmodium vivax SaI-1]
 gi|148804001|gb|EDL45400.1| eukaryotic initiation factor, putative [Plasmodium vivax]
          Length = 388

 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   + LT+ + E N  V  MH+ +   ER +I+   R  KF VL+  ++   GLD+ E
Sbjct: 263 TKLKVDWLTKKMQEANFTVCKMHAGMSQSERDDIMLKFRQCKFRVLISTDIWGRGLDVQE 322

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        S+ S I  IGR+ R
Sbjct: 323 VSLVVNYDLPN-----SRESYIHRIGRSGR 347


>gi|67623509|ref|XP_668037.1| eukaryotic initiation factor 4A-3 (eIF4A-3) (eIF-4A-3)
           [Cryptosporidium hominis TU502]
 gi|54659212|gb|EAL37800.1| eukaryotic initiation factor 4A-3 (eIF4A-3) (eIF-4A-3)
           [Cryptosporidium hominis]
          Length = 395

 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 24/133 (18%)

Query: 560 EIRSARTQVE----------DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           +IR    QVE          D+YD + +        ++   TK   E L++ + E +  V
Sbjct: 234 KIRQYHVQVEEEKWKFETLCDLYDTLTVTQS-----IIFCNTKNKVEWLSKKMMENHFTV 288

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRS 667
            ++H ++  + R EI+R+ R GK  VL+  +L   G+D+ +  LV   D   +KE +   
Sbjct: 289 SFVHGDLPQVTREEILREFREGKTRVLITTDLWGRGIDVQQVNLVVNYDLPINKELY--- 345

Query: 668 KTSLIQTIGRAAR 680
               I  IGR+ R
Sbjct: 346 ----IHRIGRSGR 354


>gi|326634448|pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
          Length = 395

 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L      V  +H +++T ER  +I D R G+  VL+  N+L  G
Sbjct: 247 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 306

Query: 646 LDIPECGLVAILD----ADKEGFLRSKTSLIQTIGRAAR 680
           +DIP   +V   D    A+ +       + I  IGR  R
Sbjct: 307 IDIPTVSMVVNYDLPTLANGQA---DPATYIHRIGRTGR 342


>gi|325979039|ref|YP_004288755.1| ATP-dependent DNA helicase RecG [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178967|emb|CBZ49011.1| ATP-dependent DNA helicase RecG [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 671

 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L+ Y +  +  V  MH  +K  E+  I++D +  K  VLV   ++  G+++P   ++ 
Sbjct: 486 EELSAY-FADSATVALMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMI 544

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           I+DAD+ G     + L Q  GR  R +  S  IL A+  T++
Sbjct: 545 IMDADRFGL----SQLHQLRGRVGRGDKQSYAILVANPKTQT 582


>gi|315613614|ref|ZP_07888521.1| DNA helicase RecG [Streptococcus sanguinis ATCC 49296]
 gi|315314305|gb|EFU62350.1| DNA helicase RecG [Streptococcus sanguinis ATCC 49296]
          Length = 671

 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H ++K+ E+ +I+++ +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQEFKEQKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|306834226|ref|ZP_07467346.1| DNA helicase RecG [Streptococcus bovis ATCC 700338]
 gi|304423799|gb|EFM26945.1| DNA helicase RecG [Streptococcus bovis ATCC 700338]
          Length = 671

 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L+ Y +  +  V  MH  +K  E+  I++D +  K  VLV   ++  G+++P   ++ 
Sbjct: 486 EELSAY-FADSATVALMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMI 544

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           I+DAD+ G     + L Q  GR  R +  S  IL A+  T++
Sbjct: 545 IMDADRFGL----SQLHQLRGRVGRGDKQSYAILVANPKTQT 582


>gi|237755972|ref|ZP_04584559.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691876|gb|EEP60897.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 405

 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L+  +  ++++   TK  A++L E L E       +H +    +R  ++ + R GK  +L
Sbjct: 241 LSQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKIL 300

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLDI    LV        G  R   S I  IGR  R
Sbjct: 301 VATDVAARGLDIKGVDLVI-----NYGLPRDAESYIHRIGRTGR 339


>gi|148702333|gb|EDL34280.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_b [Mus
           musculus]
          Length = 1012

 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 584 VLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 643

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 644 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 695


>gi|19387225|gb|AAL87143.1|AF479824_1 DEAD box RNA helicase Vasa [Melanotaenia fluviatilis]
          Length = 400

 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 214 RTMVFVETKRQADFIAVFLCQEKVSTTSIHGDREQREREQALGDFRSGKCPVLVATSVAA 273

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDIP+   V   D        +    +  IGR  R  N+
Sbjct: 274 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNT 309


>gi|67902058|ref|XP_681285.1| hypothetical protein AN8016.2 [Aspergillus nidulans FGSC A4]
 gi|74656894|sp|Q5AUL4|FAL1_EMENI RecName: Full=ATP-dependent RNA helicase fal1
 gi|40740448|gb|EAA59638.1| hypothetical protein AN8016.2 [Aspergillus nidulans FGSC A4]
 gi|259480767|tpe|CBF73711.1| TPA: ATP-dependent RNA helicase fal1 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5AUL4] [Aspergillus
           nidulans FGSC A4]
          Length = 399

 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R
Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGR 357


>gi|291389880|ref|XP_002711450.1| PREDICTED: DEAD box polypeptide 17 [Oryctolagus cuniculus]
          Length = 835

 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 517 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 576

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 577 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 630

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 631 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 657


>gi|282852620|ref|ZP_06261962.1| transcription-repair coupling factor [Lactobacillus gasseri 224-1]
 gi|282556362|gb|EFB61982.1| transcription-repair coupling factor [Lactobacillus gasseri 224-1]
          Length = 935

 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 60/309 (19%), Positives = 126/309 (40%), Gaps = 27/309 (8%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           +EK  LL GV     +  + +++   QRP I++  ++  A  L  E  N  P   V  F 
Sbjct: 22  KEKRSLLTGVNSGAFSAVLMQMLSTWQRPLILVEDSEDKAQLLLDELGNLLPDEMVFSF- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
                  P      T T +     +++++  ++    +    R   +V++  +  Y +  
Sbjct: 81  -------PVDATIATQTAVASPDELSQRLQTLKFLTEK----RAGIVVITPQALQYKLSD 129

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
              + +     K     +  EL +   +  Y+R++I    G F   GD ++++P   E+ 
Sbjct: 130 PRDFIKAKQVFKPEAEFDLDELTAWFTQAGYRRENIVARPGEFARRGDILDVYPLDQENP 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++++ + EF   T + +   + + I      V     L+ A++ IK+++   
Sbjct: 190 V-RIEFFGDEVDTVKEFDAATQRSLEEKDIVSIGPALDRVFSSRNLHEAIEKIKQDMNES 248

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           +   E          ++      +++LE  G     ENY+  +    P      L +Y+ 
Sbjct: 249 IANEEN---------VKNHFVKAIDLLEADGLP---ENYAFLIDYLLPKS--FNLVDYLD 294

Query: 467 EDSLLFVDE 475
           ++ LL  D+
Sbjct: 295 KNGLLLFDD 303


>gi|256269521|gb|EEU04808.1| Irc3p [Saccharomyces cerevisiae JAY291]
          Length = 689

 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           LL  + K   + L +   +  I   Y+ S+ K +ER  II+  + G+ +VL+   +  EG
Sbjct: 282 LLFGVDKAHVQSLHKLFKDNGINTDYVTSDTKQIERDSIIQKFKNGETEVLMNCGIFTEG 341

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D+P    + +    K     S++ LIQ IGR  R  +SK
Sbjct: 342 TDMPNIDCILLCRPTK-----SRSLLIQMIGRGLRLHHSK 376


>gi|126306068|ref|XP_001381369.1| PREDICTED: similar to Chain C, Structure Of The Human Exon Junction
           Complex With A Trapped Dead-Box Helicase Bound To Rna
           [Monodelphis domestica]
          Length = 404

 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 10/113 (8%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           V D+YD + +      + ++   TKR  + LTE + E N  V  +H ++ + ER  I+++
Sbjct: 261 VCDLYDSLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSIHGDMPSRERKFIMKE 315

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            R G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R
Sbjct: 316 FRSGVNRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGR 363


>gi|91206662|sp|Q4WEB4|FAL1_ASPFU RecName: Full=ATP-dependent RNA helicase fal1
          Length = 398

 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 256 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 310

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R
Sbjct: 311 QGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGR 356


>gi|328771263|gb|EGF81303.1| hypothetical protein BATDEDRAFT_87897 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 452

 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 9/109 (8%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
            DL E   ++ I    +H       R +II++   G   VL+   ++ EG+DIP    V 
Sbjct: 327 NDLVEAFQKKGIPAIGVHGNTPLHTRQKIIKEFSNGNIPVLINCGIVTEGVDIPRIDCVM 386

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYADTITKSIQLA 700
           +    K   L     L Q +GR  R    K    V  + DT+ +S+Q A
Sbjct: 387 LARPTKSSGL-----LQQMLGRGMRKFEGKKRCIVFDFVDTMNRSLQAA 430


>gi|304408993|ref|ZP_07390614.1| transcription-repair coupling factor [Shewanella baltica OS183]
 gi|307302996|ref|ZP_07582751.1| transcription-repair coupling factor [Shewanella baltica BA175]
 gi|304352814|gb|EFM17211.1| transcription-repair coupling factor [Shewanella baltica OS183]
 gi|306913356|gb|EFN43778.1| transcription-repair coupling factor [Shewanella baltica BA175]
          Length = 1165

 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 97/208 (46%), Gaps = 25/208 (12%)

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
           S +E+N  IV+  V+ +      ++Y S  +  LK GDS +  ++   L    Y   +  
Sbjct: 104 SQIEQN--IVIVPVTTLMMRLPPKAYLSANVFVLKKGDSYKLHDVRQHLTDTGYHSVEQV 161

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G F + G  ++IFP+ + ++  R+ +F  ++E I  F P T + ++ V++I++    
Sbjct: 162 YEHGEFAIRGSILDIFPTGM-NMPLRIELFDEEVETIRHFDPETQRSLQPVDSIRLLPAK 220

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
            +    PT ++A++  ++  + R   + K     E + + Q ++  L           IE
Sbjct: 221 EF----PTDSSAIEGFRQRYRRRFEVIVK-----EPESVYQLVSRSL-------MPAGIE 264

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
           NY          +   TLF+Y+P+D+ L
Sbjct: 265 NYLPLFF-----DDTATLFDYLPKDTQL 287


>gi|285019874|ref|YP_003377585.1| helicase [Xanthomonas albilineans GPE PC73]
 gi|283475092|emb|CBA17591.1| putative helicase protein [Xanthomonas albilineans]
          Length = 829

 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 33/183 (18%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI------IRPTG----------LVDPPVEIR-SA 564
           RP  I+ SAT G+      + +I +++        PTG          +V+P + +R SA
Sbjct: 237 RPQFILCSATIGN-PRAHAEALIEQRVHAITDSGAPTGDKHVLLWNPPVVNPDLGLRASA 295

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------RNIRVRYMHSEVK 617
           R+Q   +     +A + GL+ L+   ++ M E LT+YL +       +  R+R       
Sbjct: 296 RSQSNRI---ARIAIKSGLKTLVFAQSRLMVEVLTKYLKDIFDHDPRKPPRIRAYRGGYL 352

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER E  R +R G  D +V  + L  G+DI    +V +      G+  S  +  Q  GR
Sbjct: 353 PSERREAERAMRAGSIDGIVSTSALELGVDIGALDVVVL-----NGYPGSVAATWQRFGR 407

Query: 678 AAR 680
           A R
Sbjct: 408 AGR 410


>gi|218296433|ref|ZP_03497176.1| ATP-dependent DNA helicase RecG [Thermus aquaticus Y51MC23]
 gi|218243227|gb|EED09758.1| ATP-dependent DNA helicase RecG [Thermus aquaticus Y51MC23]
          Length = 767

 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 6/125 (4%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            AQ  L     +L ++  ++LT YL+   +RV  +       ER  I+  LR G+  V V
Sbjct: 390 GAQGALMAPTEILARQHFQNLTRYLFPLGVRVELLLGSTPAREREAILARLRSGEAQVAV 449

Query: 638 GIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           G + L++EG++  + GL  + +  + G L+ +  L     + A+     +++ A  I +S
Sbjct: 450 GTHALIQEGVEFQDLGLAVVDEEHRFGVLQRRALL-----KMAKTPPDVLVMSATPIPRS 504

Query: 697 IQLAI 701
           + L +
Sbjct: 505 LALTL 509



 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+  +H ++   E+  ++   R G +D+LV   ++  G+DIP   L+ + +A++ G    
Sbjct: 587 RIALLHGKMPAREKEAVMEAFRQGAYDLLVSTTVIEVGVDIPRATLIIVENAERFGL--- 643

Query: 668 KTSLIQTIGRAARN 681
              L Q  GR  R 
Sbjct: 644 -AQLHQLRGRVGRG 656


>gi|157370240|ref|YP_001478229.1| transcription-repair coupling factor [Serratia proteamaculans 568]
 gi|157322004|gb|ABV41101.1| transcription-repair coupling factor [Serratia proteamaculans 568]
          Length = 1176

 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 53/296 (17%), Positives = 125/296 (42%), Gaps = 35/296 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A+++E    P +++AP+   A +L  E + F      +  V+    ++  
Sbjct: 49  LTGSACAVECAEIVERHNGPVMLIAPDMQNALRLRDEIQQF-----TDQMVTTLSDWETL 103

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            Y    D++   +  I+ ++  + H  T         I++   + +  +   E      +
Sbjct: 104 PY----DSFSPHQEIISARLSSLYHLPTMV----RGVIILPVNTLMQRVCPHEFLHGHAL 155

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K G  + + +L + L +  Y+  D  +  G F   G  +++FP   E+  +R+  F +
Sbjct: 156 VMKKGQRLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEE-PYRIDFFDD 214

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ +  F     + +  V+ I +     + T +  +       +E+ ++R         
Sbjct: 215 EIDSLRTFDVDNQRTLSEVDAINLLPAHEFPTDKNAIELFRSQWREQFEVR--------- 265

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             +A+ + Q++        + G+  +   Y + L      +P P+LF Y+P+++L+
Sbjct: 266 -RDAEHIYQQV--------SKGTWPAGIEYWQPLFF---SQPLPSLFSYLPDNTLI 309


>gi|51258614|gb|AAH78667.1| DDX42 protein [Homo sapiens]
          Length = 919

 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 482 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 541

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 542 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 593


>gi|70926570|ref|XP_735804.1| helicase [Plasmodium chabaudi chabaudi]
 gi|56509789|emb|CAH86331.1| helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 260

 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 11/120 (9%)

Query: 567 QVEDVYDEINLA------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +VE V +E  L+       + G  +L+    K+  +D+ EYL  + +    +H  +   E
Sbjct: 79  EVEYVKEEFKLSYLLQVLQKTGPPVLIFCENKKDVDDVHEYLLLKGVNAIAIHGSLGQTE 138

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E I   R G+ DVLVG ++  +GLD P    V   D  K+       + +  IGR  R
Sbjct: 139 RLEAINLFRNGEKDVLVGTDVASKGLDFPSIEHVINYDMPKD-----IENYVHRIGRTGR 193


>gi|218768305|ref|YP_002342817.1| transcription-repair coupling factor [Neisseria meningitidis Z2491]
 gi|121052313|emb|CAM08643.1| transcription-repair coupling factor [Neisseria meningitidis Z2491]
          Length = 1296

 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 17/208 (8%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ +   
Sbjct: 37  VVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ--- 92

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            ++  A        D + V   + +  +  V   +     LK G +++   L S LV   
Sbjct: 93  -IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDAG 144

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  
Sbjct: 145 YNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVSE 203

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELK 404
           I++     +    PT + A K  +   +
Sbjct: 204 IRLLPAHEF----PTDSEAQKIFRSRFR 227



 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 987  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1043

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 1044 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1079


>gi|323309653|gb|EGA62861.1| Irc3p [Saccharomyces cerevisiae FostersO]
          Length = 689

 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           LL  + K   + L +   +  I   Y+ S+ K +ER  II+  + G+ +VL+   +  EG
Sbjct: 282 LLFGVDKAHVQSLHKLFKDNGINTBYVTSDTKQIERDXIIQKFKNGETEVLMNCGIFTEG 341

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D+P    + +    K     S++ LIQ IGR  R  +SK
Sbjct: 342 TDMPNIDCILLCRPTK-----SRSLLIQMIGRGLRLHHSK 376


>gi|317011657|gb|ADU85404.1| ATP-dependent DNA helicase RecG [Helicobacter pylori SouthAfrica7]
          Length = 621

 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177
           N KI  P       N+S+ +  F     +  + DQ  AI ++   + S    + L++G  
Sbjct: 209 NAKIVCP-------NNSERLKAFIASLPFQLTNDQQNAIKEIQNDLTSPIACKRLIVGDV 261

Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           G GKT   +A ++ A     ++MAP  ILA QLY+E   F P
Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|308487516|ref|XP_003105953.1| CRE-INF-1 protein [Caenorhabditis remanei]
 gi|308254527|gb|EFO98479.1| CRE-INF-1 protein [Caenorhabditis remanei]
          Length = 402

 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y+ +N+      + ++   T+R  + LTE +  +   V  +H ++   ER  I+R+ R
Sbjct: 261 DLYNVVNVT-----QAVIFCNTRRKVDQLTEQMTNKQFTVSCLHGDMDQAERDTIMREFR 315

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++L  G+D+ +  LV   D        ++ + I  IGR+ R
Sbjct: 316 SGSSRVLITTDILARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGR 361


>gi|228477095|ref|ZP_04061733.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           salivarius SK126]
 gi|228251114|gb|EEK10285.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           salivarius SK126]
          Length = 528

 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|119182910|ref|XP_001242554.1| hypothetical protein CIMG_06450 [Coccidioides immitis RS]
          Length = 388

 Score = 44.7 bits (104), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 228 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 282

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 283 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 328


>gi|225868917|ref|YP_002744865.1| DEAD box helicase family protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702193|emb|CAW99913.1| DEAD box helicase family protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 538

 Score = 44.7 bits (104), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332


>gi|237808346|ref|YP_002892786.1| type III restriction protein res subunit [Tolumonas auensis DSM
           9187]
 gi|237500607|gb|ACQ93200.1| type III restriction protein res subunit [Tolumonas auensis DSM
           9187]
          Length = 692

 Score = 44.7 bits (104), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 13/110 (11%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           + G+R +  V TKR+    TE+    +I      +E + L+R  I+++  LGK DV+V I
Sbjct: 532 EDGIRAVEYV-TKRLG---TEF----DISCNKFTAETELLDRSAILKNFSLGKIDVIVAI 583

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
             L EG+D+P      IL +       +    IQ  GR  RN  +K   Y
Sbjct: 584 KCLDEGVDVPSTQYAHILASST-----NPREYIQRRGRVLRNSPNKEYAY 628


>gi|242808610|ref|XP_002485202.1| ATP dependent RNA helicase (Dbp1), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218715827|gb|EED15249.1| ATP dependent RNA helicase (Dbp1), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 680

 Score = 44.7 bits (104), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L ++L  +N     +H +    ER   +   R G+  +LV   +   G
Sbjct: 455 LIFVETKRMADSLCDFLINQNFPATAIHGDRTQRERERALEMFRNGRCPILVATAVAARG 514

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 515 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 550


>gi|242279733|ref|YP_002991862.1| type III restriction protein res subunit [Desulfovibrio salexigens
           DSM 2638]
 gi|242122627|gb|ACS80323.1| type III restriction protein res subunit [Desulfovibrio salexigens
           DSM 2638]
          Length = 449

 Score = 44.7 bits (104), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI-NLLREGLDIPECGLVAI 656
           L++ L+++ + V  +  +    ER EII DL  GK  VL    +L+ EG D P  GL  +
Sbjct: 336 LSDLLFDQGVEVAVLTGKTPAGEREEIINDLNAGKIKVLASTASLIGEGFDCP--GLSTL 393

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSK 685
                   ++SK  L+Q IGR  R  + K
Sbjct: 394 FLCSP---IKSKGRLVQIIGRILRPADGK 419


>gi|188996905|ref|YP_001931156.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931972|gb|ACD66602.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 405

 Score = 44.7 bits (104), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L+  +  ++++   TK  A++L E L E       +H +    +R  ++ + R GK  +L
Sbjct: 241 LSQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKIL 300

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLDI    LV        G  R   S I  IGR  R
Sbjct: 301 VATDVAARGLDIKGVDLVI-----NYGLPRDAESYIHRIGRTGR 339


>gi|156839635|ref|XP_001643506.1| hypothetical protein Kpol_473p7 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114120|gb|EDO15648.1| hypothetical protein Kpol_473p7 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 478

 Score = 44.7 bits (104), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 5/98 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L +   +V  +H ++++ ER  +I D R G+  VL+  N+L  G
Sbjct: 330 IIFVSTKKTANLLYAKLKQEGHQVSILHGDLQSTERDRLIDDFREGRSKVLITTNVLARG 389

Query: 646 LDIPECGLVAILDADKEGFLRSK---TSLIQTIGRAAR 680
           +DIP   +V  ++ D    L  +    + I  IGR  R
Sbjct: 390 IDIPTVSMV--VNYDLPTSLNGQADPATYIHRIGRTGR 425


>gi|148702332|gb|EDL34279.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Mus
           musculus]
          Length = 927

 Score = 44.7 bits (104), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 499 VLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 558

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 559 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 610


>gi|34541680|ref|NP_906159.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis W83]
 gi|34397998|gb|AAQ67058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Porphyromonas
           gingivalis W83]
          Length = 427

 Score = 44.7 bits (104), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 9/104 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++    K    +LT  L +    V  MHS+++  +R +++RD + G  DVLV  +++ 
Sbjct: 246 RTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVDVLVATDIVA 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSK 685
            G+DI    +V   D   D E +       +  IGR AR  N +
Sbjct: 306 RGIDIDNIRVVINYDIPHDPEDY-------VHRIGRTARGTNGE 342


>gi|327463840|gb|EGF10156.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK1057]
          Length = 1167

 Score = 44.7 bits (104), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 98/227 (43%), Gaps = 14/227 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E   +  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F++  D    E      +    +  ++N  ID  +     + +  +  
Sbjct: 71  LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDHQKSGILVTNVAASKL 129

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++   +   Y            + L +G   +   L+  L +  YK+    + +G + + 
Sbjct: 130 LLPDPIDFKY----------TNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYSLR 179

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           GD ++IF     D  +R+  FG++I+ I  F P     I N+E+I I
Sbjct: 180 GDILDIFERS-ADSPYRLEFFGDEIDGIRIFNPENQTSIENIESILI 225



 Score = 37.7 bits (86), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  +     + D   G++D+LV   ++  G+DIP    + + +AD  G     
Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNSNTLFVENADHMGL---- 908

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 909 STLYQLRGRVGR---SNRIAYA 927


>gi|270294812|ref|ZP_06201013.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274059|gb|EFA19920.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 821

 Score = 44.7 bits (104), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 8/82 (9%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           II D + GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  G
Sbjct: 616 IISDFQQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRAYERAFQLMAQVAG 675

Query: 677 RAAR-NVNSKVILYADTITKSI 697
           RA R N   +V+L   +I   I
Sbjct: 676 RAGRKNKRGRVVLQTKSIDHPI 697


>gi|152965134|ref|YP_001360918.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
 gi|151359651|gb|ABS02654.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
          Length = 565

 Score = 44.7 bits (104), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL I+ +  TKR A  + E L ER      +H ++    R + +R  R GK DVLV
Sbjct: 276 ATGRGLTIVFS-RTKRTAASVAEQLTERGFAAASIHGDLGQGAREQALRAFRHGKVDVLV 334

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             ++   G+D+ +   V      ++     + + +  IGR  R  N+ V +
Sbjct: 335 ATDVAARGIDVEDVTHVINYQCPED-----EKTYLHRIGRTGRAGNTGVAV 380


>gi|115371929|ref|ZP_01459242.1| transcription-repair coupling factor [Stigmatella aurantiaca
           DW4/3-1]
 gi|115371164|gb|EAU70086.1| transcription-repair coupling factor [Stigmatella aurantiaca
           DW4/3-1]
          Length = 494

 Score = 44.7 bits (104), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 109/265 (41%), Gaps = 39/265 (14%)

Query: 130 SINNHSKDITFFQ------MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183
            + N   D  F Q      ++    P+GD  A + + L+  H R + Q   G+ G+ +  
Sbjct: 32  GLRNPGMDTPFSQTAGSEALRGAVPPTGDPFARLLERLQPGH-RARTQ---GLHGAARGH 87

Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF----------VSYYDYYQ 233
            +A++   ++ P + +A ++  A  L  +   F   N               V  YD   
Sbjct: 88  VLARLSRTLKAPLVCVAVDEEAADALAGDLAFFLGGNGTLLAPRVLRLPADEVLPYDELS 147

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
           PE ++            ++E++  + H +  +   R   +V+S  + +  +  V + + +
Sbjct: 148 PEPHI------------VSERLGTLFHLSQGT---RFPALVLSLRALLRRVLPVSTMTGL 192

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
              L  G  +++  L   LV   Y+   +    GTF V G  +++F S L +   R+  F
Sbjct: 193 AQLLTTGQDIDRDTLARQLVLMGYQSSPLVEDPGTFSVRGGILDVF-SPLYERPVRLEFF 251

Query: 354 GNDIEEISEFYPLTGQKIRNVETIK 378
           G+ IE I  F P      R V+++K
Sbjct: 252 GDTIESIRLFEP---DNQRTVDSLK 273


>gi|145593830|ref|YP_001158127.1| ATP-dependent DNA helicase RecG [Salinispora tropica CNB-440]
 gi|145303167|gb|ABP53749.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
          Length = 733

 Score = 44.7 bits (104), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  +   E+  ++R    G  DVLV   ++  G+D+P   ++ +LDAD+ G  
Sbjct: 549 GLRIGVLHGRLPAEEKDAVMRSFAAGDLDVLVATTVVEVGVDVPNATVMIVLDADRFGV- 607

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R   + + L
Sbjct: 608 ---SQLHQLRGRVGRGSAAGLCL 627


>gi|50310213|ref|XP_455126.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660335|sp|Q6CLR3|DED1_KLULA RecName: Full=ATP-dependent RNA helicase DED1
 gi|49644262|emb|CAG97833.1| KLLA0F01034p [Kluyveromyces lactis]
          Length = 627

 Score = 44.7 bits (104), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A+ +GL  L+ V TKR A+ LT++L     +   +H +    ER   +   + G+  +LV
Sbjct: 413 ASNEGL-TLIFVETKRAADSLTDFLIMEGFKATAIHGDRTQGERERALSAFKTGRATILV 471

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              +   GLDIP    V   D   +         +  IGR  R  N+ V
Sbjct: 472 ATAVAARGLDIPNVTHVINFDLPND-----IDDYVHRIGRTGRAGNTGV 515


>gi|329767219|ref|ZP_08258746.1| ATP-dependent DNA helicase RecG [Gemella haemolysans M341]
 gi|328836886|gb|EGF86533.1| ATP-dependent DNA helicase RecG [Gemella haemolysans M341]
          Length = 669

 Score = 44.7 bits (104), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 6/103 (5%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVT 177
           N +I     S  +NN  KDI  F+    +  +G Q   I +++  ++   K+ +LL G  
Sbjct: 230 NSRIEDTRYSVGVNN--KDIKVFKDSLPFTLTGAQSRVIDEIVTDLNEPYKMDRLLQGDV 287

Query: 178 GSGKTFTMAKVIEAMQRPAI---VMAPNKILAAQLYSEFKNFF 217
           GSGKT   A  + A  +      +MAP +ILA Q +  F  FF
Sbjct: 288 GSGKTAVAAATLYATIKAGYQTAIMAPTEILANQHFETFFEFF 330


>gi|222153378|ref|YP_002562555.1| DEAD box helicase family protein [Streptococcus uberis 0140J]
 gi|222114191|emb|CAR42728.1| DEAD box helicase family protein [Streptococcus uberis 0140J]
          Length = 561

 Score = 44.7 bits (104), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 270 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQIDILVATDVAARGLDI-- 327

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 328 SGVTHVYNYD---ITQDPESYVHRIGRTGR 354


>gi|194216767|ref|XP_001501051.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           [Equus caballus]
          Length = 935

 Score = 44.7 bits (104), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612


>gi|238502855|ref|XP_002382661.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus flavus NRRL3357]
 gi|317027125|ref|XP_001400167.2| ATP-dependent RNA helicase FAL1 [Aspergillus niger CBS 513.88]
 gi|317148165|ref|XP_001822547.2| ATP-dependent RNA helicase FAL1 [Aspergillus oryzae RIB40]
 gi|152032452|sp|A5AAE5|FAL1_ASPNC RecName: Full=ATP-dependent RNA helicase fal1
 gi|220691471|gb|EED47819.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus flavus NRRL3357]
          Length = 399

 Score = 44.7 bits (104), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R
Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGR 357


>gi|119776507|ref|YP_929247.1| ATP-dependent DNA helicase RecG [Shewanella amazonensis SB2B]
 gi|119769007|gb|ABM01578.1| ATP-dependent DNA helicase RecG [Shewanella amazonensis SB2B]
          Length = 691

 Score = 44.7 bits (104), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 8/114 (7%)

Query: 589 VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           VL  + AED    L E    + +  +H  +K  E+  I+ D + GK D+LV   ++  G+
Sbjct: 496 VLECQAAEDTAGGLKEALPELGIGLVHGRMKGAEKQAIMADFKAGKLDLLVATTVIEVGV 555

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           D+P   L+ I + ++ G       L Q  GR  R   +   V+LY   ++ + Q
Sbjct: 556 DVPNASLMIIENPERLGL----AQLHQLRGRVGRGAVASHCVLLYKAPLSFTAQ 605


>gi|307638179|gb|ADN80629.1| ATP-dependent DNA helicase [Helicobacter pylori 908]
 gi|325996775|gb|ADZ52180.1| ATP-dependent DNA helicase [Helicobacter pylori 2018]
 gi|325998367|gb|ADZ50575.1| ATP-dependent DNA helicase [Helicobacter pylori 2017]
          Length = 628

 Score = 44.7 bits (104), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 9/102 (8%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177
           N KI  P+ S  ++N       F     +  + DQ  AI ++   + S    + L++G  
Sbjct: 214 NAKIACPNNSERLDN-------FIASLPFKLTRDQQNAIKEIQSDLTSSIACKRLIIGDV 266

Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           G GKT   +A ++ A     ++MAP  ILA QLY E   F P
Sbjct: 267 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYHEALKFLP 308


>gi|157838001|ref|NP_082350.3| ATP-dependent RNA helicase DDX42 [Mus musculus]
 gi|123796460|sp|Q810A7|DDX42_MOUSE RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|74146847|dbj|BAE41388.1| unnamed protein product [Mus musculus]
 gi|123242261|emb|CAM23778.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Mus musculus]
          Length = 929

 Score = 44.7 bits (104), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 501 VLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612


>gi|256825728|ref|YP_003149688.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256689121|gb|ACV06923.1| DNA/RNA helicase, superfamily II [Kytococcus sedentarius DSM 20547]
          Length = 499

 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +GL I+ T  TKR A  + E L ER      +H ++    R + +R  R GK DVLV  +
Sbjct: 256 RGLTIVFT-RTKRTAAKVAEQLVERGFAAAAIHGDLGQGAREQALRAFRTGKVDVLVATD 314

Query: 641 LLREGLDI 648
           +   G+D+
Sbjct: 315 VAARGIDV 322


>gi|156547765|ref|XP_001605842.1| PREDICTED: similar to CG9748-PA [Nasonia vitripennis]
          Length = 708

 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 7/133 (5%)

Query: 559 VEIRSARTQVEDVYDEINL--AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           VE    R+ + D+    N     Q+ L  L+ V TK+ A+ L E+L+ ++  V  +H + 
Sbjct: 463 VEEHEKRSYLLDLLGACNFQEPTQESL-TLVFVETKKGADMLEEFLHNQHYPVTSIHGDR 521

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLI 672
              ER + +R  R G   +LV   +   GLDIP    V   D   D E ++    +T  +
Sbjct: 522 SQHEREDALRRFRSGHTPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRM 581

Query: 673 QTIGRAARNVNSK 685
             +G A    NSK
Sbjct: 582 GNLGLATSFFNSK 594


>gi|75287517|sp|Q5VQL1|RH14_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 14
 gi|55296348|dbj|BAD68264.1| putative p68 RNA helicase [Oryza sativa Japonica Group]
 gi|222617825|gb|EEE53957.1| hypothetical protein OsJ_00557 [Oryza sativa Japonica Group]
 gi|240065031|gb|ACS44654.1| ATP-dependent RNA helicase DB10 [Oryza sativa Japonica Group]
 gi|240065056|gb|ACS44655.1| ATP-dependent RNA helicase DB10 [Oryza sativa Indica Group]
          Length = 708

 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D+I  + + G +I++   TKRM + L   L  R      +H +    ER  ++ + R G+
Sbjct: 416 DQILRSQEPGSKIIIFCSTKRMCDQLARNL-ARQYGASAIHGDKSQAERDSVLSEFRSGR 474

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +LV  ++   GLDI +  +V   D     F       +  IGR  R
Sbjct: 475 CPILVATDVAARGLDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGR 517


>gi|328950394|ref|YP_004367729.1| ATP-dependent DNA helicase RecG [Marinithermus hydrothermalis DSM
           14884]
 gi|328450718|gb|AEB11619.1| ATP-dependent DNA helicase RecG [Marinithermus hydrothermalis DSM
           14884]
          Length = 775

 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            AQ  L     +L K+  ++L+ YL+   +RV  +   +   E+ E++R +R G+ DV+V
Sbjct: 399 GAQSALMAPTEILAKQHFQNLSRYLWPLGVRVELLVGAMSAAEKREVLRRVREGEVDVVV 458

Query: 638 GIN-LLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           G + L++E ++  + GL  I +  + G L+ +  L
Sbjct: 459 GTHALIQEDVEFKDLGLAVIDEEHRFGVLQRRALL 493



 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 10/117 (8%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R+A++L   L   ++R+  +H  +   E+  ++   R  +FD+LV   ++  G+DIP   
Sbjct: 582 RLADELRALLP--DVRIEILHGRMSAAEKDAVMERFRRQEFDLLVSTTVIEVGVDIPNAT 639

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQL--AIDETT 705
           L+ I +A++ G       L Q  GR  R       +++  DT  ++++    I+E+T
Sbjct: 640 LMVIENAERFGL----AQLHQLRGRVGRGDREAYCILIAGDTSKRTMKRLKVIEEST 692


>gi|327399449|ref|YP_004340318.1| transcription-repair coupling factor [Hippea maritima DSM 10411]
 gi|327182078|gb|AEA34259.1| transcription-repair coupling factor [Hippea maritima DSM 10411]
          Length = 1032

 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 272 CIVVSSVSC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            + ++++S  I  + S +S+   ++Q+K GD VE  E +  L +  YKR D+    G F 
Sbjct: 85  LVFLTNISALIQPVISFDSFIDKVIQIKRGDVVELDEFIKRLSELFYKRVDMVYAPGEFA 144

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
             G  I++F S   D   R+  F ++++ I  FY L  Q  R  ETI
Sbjct: 145 KRGAIIDLF-STFYDKPMRIEFFDDEVDSIKLFY-LENQ--RTFETI 187


>gi|308469293|ref|XP_003096885.1| CRE-DRH-1 protein [Caenorhabditis remanei]
 gi|308241300|gb|EFO85252.1| CRE-DRH-1 protein [Caenorhabditis remanei]
          Length = 1037

 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 18/129 (13%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++E +R    G+  VLV  ++  EGLDI +C LV      K  +  ++ + +Q  GR  
Sbjct: 755 KQMEKLRKFASGEIRVLVATSVAEEGLDIAKCNLVI-----KYNYATNEIAHVQRRGR-G 808

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK---KHNINPQSVKEKIM----EV 732
           R +NSK IL    IT SI L  D+    R+K+   NK   K   NP + +E +      +
Sbjct: 809 RAINSKCIL----ITNSIPLR-DQEGANRDKENMMNKALLKIQSNPFAFREAVTAEASNI 863

Query: 733 IDPILLEDA 741
            + IL EDA
Sbjct: 864 WNRILREDA 872


>gi|307182555|gb|EFN69748.1| ATP-dependent RNA helicase bel [Camponotus floridanus]
          Length = 692

 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L EYL      V  +H +    ER E +R  R GK  +LV   +   G
Sbjct: 475 LVFVETKKGADMLEEYLATMGYPVTSIHGDRTQREREEALRRFRAGKAPILVATAVAARG 534

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D   D E ++    +T  +  +G A    N K
Sbjct: 535 LDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNLGLATSFFNHK 578


>gi|302754310|ref|XP_002960579.1| hypothetical protein SELMODRAFT_164382 [Selaginella moellendorffii]
 gi|302771598|ref|XP_002969217.1| hypothetical protein SELMODRAFT_91413 [Selaginella moellendorffii]
 gi|300162693|gb|EFJ29305.1| hypothetical protein SELMODRAFT_91413 [Selaginella moellendorffii]
 gi|300171518|gb|EFJ38118.1| hypothetical protein SELMODRAFT_164382 [Selaginella moellendorffii]
          Length = 401

 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  E L+E +   N  V  MH E+   ER  I+++ R
Sbjct: 260 DLYDTLTIT-----QAVIFCNTKRKVEWLSEKMRSSNFTVSSMHGEMPQKERDTIMKEFR 314

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   GLD+ +  LV   D        S+   I  IGR+ R
Sbjct: 315 EGQTRVLITTDVWARGLDVQQVSLVINYDLPN-----SRELYIHRIGRSGR 360


>gi|291391627|ref|XP_002712267.1| PREDICTED: interferon induced with helicase C domain 1 [Oryctolagus
           cuniculus]
          Length = 1022

 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 20/167 (11%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERN----IRVRYMH-------SEVKTL---ERIEII 625
           ++  R ++   T++ A  L++++ E      + V+  H       SE K +   E+ E+I
Sbjct: 713 EESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVI 772

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R GK ++L+   +  EGLDI EC ++      + G + ++ +++Q  GR AR   S 
Sbjct: 773 SKFRTGKINLLIATTVAEEGLDIKECNVII-----RYGLVTNEIAMVQARGR-ARADEST 826

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
            IL   + +  ++       R +      ++  N+ P+  + KI+E+
Sbjct: 827 YILVGCSGSGVVERETVNDFREKMMYTAIHRVQNMKPEEYEHKILEL 873


>gi|281207287|gb|EFA81470.1| DEAD/DEAH box helicase [Polysphondylium pallidum PN500]
          Length = 922

 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 9/127 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K+  +D+ EYL  + +    +H +    ER   I+  + GK DVL+  ++  +
Sbjct: 461 VLIFCENKKDVDDIYEYLLLKQVEAVSLHGDKTQEERDIAIKMFKEGKKDVLIATDVASK 520

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P+   V   D  KE       + I  IGR  R V   +I Y  T+    +  I E 
Sbjct: 521 GLDFPDIQHVINFDMPKE-----IENYIHRIGRTGRCVC--IICY--TMRMIPREHIQED 571

Query: 705 TRRREKQ 711
           ++R ++Q
Sbjct: 572 SKRHQQQ 578


>gi|262282056|ref|ZP_06059825.1| ATP-dependent DNA helicase RecG [Streptococcus sp. 2_1_36FAA]
 gi|262262510|gb|EEY81207.1| ATP-dependent DNA helicase RecG [Streptococcus sp. 2_1_36FAA]
          Length = 671

 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+L  Y +  + RV  +H ++K+ E+  I++  +  + D+LV   ++  G+++P   +
Sbjct: 484 LEEELQAY-FGVDARVSLLHGKMKSDEKEAIMQAFKNKEVDILVSTTVIEVGVNVPNATI 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  IL A+  T+S
Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGDKQSYAILVANPKTES 582


>gi|145506835|ref|XP_001439378.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406562|emb|CAK71981.1| unnamed protein product [Paramecium tetraurelia]
          Length = 442

 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 586 LLTVLTKRMAEDLTEY-LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           LL    K++     EY L    ++ RY+H ++K  ER  I+ D + G  + L+  NL   
Sbjct: 308 LLIFCQKKIDTQKLEYRLSLHGLKARYLHGDLKQAERDYIMEDFKTGAINCLITTNLASR 367

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           GLDI +  +V   D     F  +    I  IGR  R
Sbjct: 368 GLDISDVDVVINYD-----FPDNIEDYIHRIGRTGR 398


>gi|226823309|ref|NP_001152847.1| eukaryotic initiation factor 4A-I isoform 2 [Mus musculus]
 gi|74151289|dbj|BAE38776.1| unnamed protein product [Mus musculus]
          Length = 364

 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|311255076|ref|XP_003126098.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Sus
           scrofa]
          Length = 801

 Score = 44.7 bits (104), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 483 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 542

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 543 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 596

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 597 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 623


>gi|302783318|ref|XP_002973432.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii]
 gi|300159185|gb|EFJ25806.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii]
          Length = 506

 Score = 44.7 bits (104), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           IL+ V TKR A+ L ++L +  I    +H +   +ER   +R  R G   +LV  ++   
Sbjct: 316 ILVFVETKRGADSLEDWLIQMGISATTIHGDRTQVEREHALRSFRTGVTPILVATDVAAR 375

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           GLDIP   +  +++ D    +      I   GRA ++
Sbjct: 376 GLDIPH--VAHVINYDLPSDIDDYVHRIGRTGRAGKS 410


>gi|311742949|ref|ZP_07716757.1| DNA helicase RecG [Aeromicrobium marinum DSM 15272]
 gi|311313629|gb|EFQ83538.1| DNA helicase RecG [Aeromicrobium marinum DSM 15272]
          Length = 705

 Score = 44.7 bits (104), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+ ++H  +   E+  ++R    G  DVLV   ++  G+D+P   ++ ++DAD+ G  
Sbjct: 521 GLRLGFLHGRLPADEKDAVMRAFAAGDVDVLVATTVIEVGVDVPNATVMVVMDADRFGM- 579

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADT 692
              + L Q  GR  R     + L   T
Sbjct: 580 ---SQLHQLRGRVGRGQEPGLCLLVTT 603


>gi|226365506|ref|YP_002783289.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4]
 gi|226243996|dbj|BAH54344.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4]
          Length = 587

 Score = 44.7 bits (104), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 8/145 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  EDL E L  R      ++ ++   +R   I  L+ G  D+LV  ++   
Sbjct: 253 MIIFVRTKQATEDLAERLRSRGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDVAAR 312

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R    + +L+     + +  AI+
Sbjct: 313 GLDVDRISHVVNYDIPHDTESYVHR----IGRTGRAGR--AGEALLFVAPRERHLLKAIE 366

Query: 703 ETTRRREKQLEHNKKHNINPQSVKE 727
           + TR+   +++     ++N Q V +
Sbjct: 367 KATRQPLAEMQLPSVDDVNAQRVSK 391


>gi|224095173|ref|XP_002195734.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Taeniopygia
           guttata]
          Length = 842

 Score = 44.7 bits (104), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 17/151 (11%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+  ++  
Sbjct: 527 KTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVAS 586

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +++ A   
Sbjct: 587 RGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGNLKQA--- 637

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
             R   K LE         Q++  K+M+++D
Sbjct: 638 --RELIKVLEEAN------QAINPKLMQLVD 660


>gi|62857341|ref|NP_001016823.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Xenopus (Silurana)
           tropicalis]
 gi|89273979|emb|CAJ82187.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Xenopus (Silurana)
           tropicalis]
 gi|163916608|gb|AAI57773.1| hypothetical protein LOC549577 [Xenopus (Silurana) tropicalis]
          Length = 647

 Score = 44.7 bits (104), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  YL + +     +H + +  +R E IRD R GK  V+V   +  
Sbjct: 475 RTMIFVNTKKKADVIAGYLCQEHFPTTSIHGDREQCQREEAIRDFRSGKCPVIVCTAVAA 534

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDI     V   D  KE         +  IGR  R  N
Sbjct: 535 RGLDIENVQHVINYDVPKE-----IDEYVHRIGRTGRCGN 569


>gi|116628945|ref|YP_814117.1| transcription-repair coupling factor [Lactobacillus gasseri ATCC
           33323]
 gi|116094527|gb|ABJ59679.1| transcription-repair coupling factor [Lactobacillus gasseri ATCC
           33323]
          Length = 1165

 Score = 44.7 bits (104), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 60/309 (19%), Positives = 126/309 (40%), Gaps = 27/309 (8%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           +EK  LL GV     +  + +++   QRP I++  ++  A  L  E  N  P   V  F 
Sbjct: 22  KEKRSLLTGVNSGAFSAVLMQMLSTWQRPLILVEDSEDKAQLLLDELGNLLPDEMVFSF- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
                  P      T T +     +++++  ++    +    R   +V++  +  Y +  
Sbjct: 81  -------PVDATIATQTAVASPDELSQRLQTLKFLTEK----RAGIVVITPQALQYKLSD 129

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
              + +     K     +  EL +   +  Y+R++I    G F   GD ++++P   E+ 
Sbjct: 130 PRDFIKAKQVFKPEAEFDLDELTAWFTQAGYRRENIVARPGEFARRGDILDVYPLDQEN- 188

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++++ + EF   T + +   + + I      V     L+ A++ IK+++   
Sbjct: 189 PVRIEFFGDEVDTVKEFDAATQRSLEEKDIVSIGPALDRVFSSRNLHEAIEKIKQDMNES 248

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           +   E          ++      +++LE  G     ENY+  +    P      L +Y+ 
Sbjct: 249 IANEEN---------VKNHFVKAIDLLEADGLP---ENYAFLIDYLLP--KSFNLVDYLD 294

Query: 467 EDSLLFVDE 475
           ++ LL  D+
Sbjct: 295 KNGLLLFDD 303


>gi|302138848|gb|ADK94762.1| vasa [Clarias gariepinus]
          Length = 681

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 500 RTMVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALSDFRTGKCPVLVATSVAA 559

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDI     V   D  K     S    +  IGR  R  N+
Sbjct: 560 RGLDIEHVQHVVNFDLPK-----SIEEYVHRIGRTGRCGNT 595


>gi|225870075|ref|YP_002746022.1| DEAD box helicase family protein [Streptococcus equi subsp. equi
           4047]
 gi|225699479|emb|CAW93007.1| DEAD box helicase family protein [Streptococcus equi subsp. equi
           4047]
          Length = 538

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332


>gi|212639618|ref|YP_002316138.1| primosome assembly protein PriA [Anoxybacillus flavithermus WK1]
 gi|212561098|gb|ACJ34153.1| Primosomal protein N' (replication factor Y) - superfamily II
           helicase [Anoxybacillus flavithermus WK1]
          Length = 804

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 20/147 (13%)

Query: 591 TKRMAEDLTEYL-YERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREG 645
           T+++ E+LT+ L + R IR+     +V T  R      ++ +   GK D+L+G  ++ +G
Sbjct: 564 TQKVEEELTKLLPHARVIRM-----DVDTTSRKGAHERLLNEFGDGKADILLGTQMIAKG 618

Query: 646 LDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR-NVNSKVILYADTITK-S 696
           LD P   LV +L AD    +       ++   L Q  GRA R ++  +V++   T    S
Sbjct: 619 LDFPNVTLVGVLAADTMLHIPDFRAAEKTFQLLTQVSGRAGRHHLPGEVVIQTYTPEHYS 678

Query: 697 IQLAIDETTRR-REKQLEHNKKHNINP 722
           IQLA D       E+++ + KKH   P
Sbjct: 679 IQLAADHHFEAFYEREMMNRKKHGYPP 705


>gi|237831253|ref|XP_002364924.1| ATP-dependent helicase, putative [Toxoplasma gondii ME49]
 gi|211962588|gb|EEA97783.1| ATP-dependent helicase, putative [Toxoplasma gondii ME49]
 gi|221487231|gb|EEE25477.1| ATP-dependent helicase, putative [Toxoplasma gondii GT1]
 gi|221506914|gb|EEE32531.1| ATP-dependent helicase, putative [Toxoplasma gondii VEG]
          Length = 395

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK   E L + + E N  V  MH ++   ER EI+R  R
Sbjct: 254 DLYDTLTIT-----QAVIFCNTKAKVEWLAQKMKEANFTVSRMHGDMPQQERDEIMRQFR 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   GLD+ +  LV   D        S+   I  IGR+ R
Sbjct: 309 GGQSRVLIATDVWGRGLDVQQVSLVINYDLPN-----SRELYIHRIGRSGR 354


>gi|254428150|ref|ZP_05041857.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
 gi|196194319|gb|EDX89278.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
          Length = 551

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A++   +L+ V TK+   +L E L  R +R   ++ ++   +R + ++ L+  +FD+L
Sbjct: 241 LEAEEHDAVLVFVRTKQATLELAEQLNRRGLRAEALNGDIPQQQREKTVQRLKDKRFDLL 300

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  +++  GLD+P   +  +++ D  G   +    I   GRA R  ++  IL+     + 
Sbjct: 301 IATDVVARGLDVPR--ITHVVNYDMPGDPEAYVHRIGRTGRAGRQGDA--ILFVARREQH 356

Query: 697 IQLAIDETTRR 707
           +   I+  TR+
Sbjct: 357 VLRQIERITRQ 367


>gi|171847136|gb|AAI61525.1| LOC549577 protein [Xenopus (Silurana) tropicalis]
          Length = 678

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  YL + +     +H + +  +R E IRD R GK  V+V   +  
Sbjct: 506 RTMIFVNTKKKADVIAGYLCQEHFPTTSIHGDREQCQREEAIRDFRSGKCPVIVCTAVAA 565

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDI     V   D  KE         +  IGR  R  N
Sbjct: 566 RGLDIENVQHVINYDVPKE-----IDEYVHRIGRTGRCGN 600


>gi|268573672|ref|XP_002641813.1| C. briggsae CBR-INF-1 protein [Caenorhabditis briggsae]
 gi|187026294|emb|CAP34430.1| CBR-INF-1 protein [Caenorhabditis briggsae AF16]
          Length = 402

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y+ +N+      + ++   T+R  + LTE +  +   V  +H ++   ER  I+R+ R
Sbjct: 261 DLYNVVNVT-----QAVIFCNTRRKVDQLTEQMTSKQFTVSCLHGDMDQAERDTIMREFR 315

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++L  G+D+ +  LV   D        ++ + I  IGR+ R
Sbjct: 316 SGSSRVLITTDILARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGR 361


>gi|320583801|gb|EFW98014.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Pichia angusta DL-1]
          Length = 396

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + L+E L + N  V  MH +++  ER  ++ + R
Sbjct: 255 DLYDSLTIT-----QAVIFCNTKKKVDWLSESLRKANFTVSSMHGDMQQDERDRVMDEFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
           LG   VL+  ++   G+D+ +  LV   D   DKE +       +  IGR+ R
Sbjct: 310 LGNSRVLISTDIWARGIDVQQVSLVINYDLPYDKENY-------VHRIGRSGR 355


>gi|289662159|ref|ZP_06483740.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 717

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +K  E+ + + D + G+ D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 541 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 599

Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689
                L Q  GR  R    +S V+LY
Sbjct: 600 ---AQLHQLRGRVGRGAAASSCVLLY 622


>gi|298345284|ref|YP_003717971.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 43063]
 gi|315655703|ref|ZP_07908601.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 51333]
 gi|298235345|gb|ADI66477.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 43063]
 gi|315489767|gb|EFU79394.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 51333]
          Length = 525

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL I+ T  TKR  + L++ L ER      +H ++    R   +R  R GK DVLV
Sbjct: 274 ARNRGLTIIFT-RTKRTCQRLSDELAERGFATGAIHGDLGQNARERALRAFRHGKVDVLV 332

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
             ++   G+D+ +   V   +  ++       + I  IGR AR  N
Sbjct: 333 ATDVAARGIDVDDVTHVINYECPED-----DKTYIHRIGRTARAGN 373


>gi|126326479|ref|XP_001374256.1| PREDICTED: similar to melanoma differentiation associated protein-5
           [Monodelphis domestica]
          Length = 1023

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 13/143 (9%)

Query: 614 SEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           SE K +   E+ E+I + R GK ++L+   +  EGLDI EC +V      +   + ++ +
Sbjct: 756 SEFKAMTQNEQKEVINNFRTGKINLLIATTVAEEGLDIKECNIVI-----RYSLVTNEIA 810

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH--NKKHNINPQSVKEK 728
           ++Q  GRA  + ++ V++ +D    S  +  +     REK +     +  N+ P+   +K
Sbjct: 811 MLQARGRARADESTYVLVASDG---SGVVERENVNLYREKMMHKAIERVQNMKPEEYAQK 867

Query: 729 IMEVIDPILLEDAATTNISIDAQ 751
           I  +    L+E    T  S+  Q
Sbjct: 868 IWGLQKQSLMEKKMKTRKSLAKQ 890


>gi|121719103|ref|XP_001276289.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus clavatus NRRL 1]
 gi|142985525|sp|A1C595|FAL1_ASPCL RecName: Full=ATP-dependent RNA helicase fal1
 gi|119404487|gb|EAW14863.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus clavatus NRRL 1]
          Length = 399

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R
Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGR 357


>gi|154249193|ref|YP_001410018.1| type III restriction protein res subunit [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153129|gb|ABS60361.1| type III restriction protein res subunit [Fervidobacterium nodosum
           Rt17-B1]
          Length = 696

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           E L  + I       E+   ERIEI++D   G    LV + +L EG+D+PE  +  I+ +
Sbjct: 562 EILKSKKIYAVKFTQELSNKERIEILKDFGEGYIQALVAMKILDEGVDVPESKIAVIMSS 621

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYA-DTITK 695
                  +    IQ IGR  R  ++K   Y  D ITK
Sbjct: 622 S-----TNPREFIQRIGRVLRISDNKGYSYVYDIITK 653


>gi|18857967|ref|NP_572424.1| CG10777 [Drosophila melanogaster]
 gi|7290853|gb|AAF46295.1| CG10777 [Drosophila melanogaster]
 gi|16648356|gb|AAL25443.1| LD32873p [Drosophila melanogaster]
 gi|220947598|gb|ACL86342.1| CG10777-PB [synthetic construct]
          Length = 945

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I  +   G +I++ V TK   ED+ + +         +H +    ER  +++D R GK +
Sbjct: 484 IKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSN 543

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +L+  ++   GLD+ +   V   D     +  S  + +  IGR  R
Sbjct: 544 ILIATDVASRGLDVEDLQYVINYD-----YPNSSENYVHRIGRTGR 584


>gi|51244372|ref|YP_064256.1| helicase [Desulfotalea psychrophila LSv54]
 gi|50875409|emb|CAG35249.1| related to predicted helicase [Desulfotalea psychrophila LSv54]
          Length = 1053

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           + A+ + +   +  I  + +  E    ER E +R  R GK   L  +++L EG+DIPE  
Sbjct: 578 KHAQYMADNFNKAGIVSKTLLGETPREERAESLRAFRAGKIHFLFTVDVLSEGVDIPEIN 637

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           LV  L   +     S T  +Q +GR  R+  +K  L
Sbjct: 638 LVLFLRPTE-----SVTVFLQQLGRGLRHAPNKDCL 668


>gi|115447485|ref|NP_001047522.1| Os02g0636300 [Oryza sativa Japonica Group]
 gi|75323584|sp|Q6H874|RH47A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 47A
 gi|49387967|dbj|BAD25075.1| DEAD/DEAH box helicase-like [Oryza sativa Japonica Group]
 gi|113537053|dbj|BAF09436.1| Os02g0636300 [Oryza sativa Japonica Group]
 gi|215713571|dbj|BAG94708.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222623309|gb|EEE57441.1| hypothetical protein OsJ_07650 [Oryza sativa Japonica Group]
          Length = 573

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           +D+   L  R ++   +H ++  L R  +++  + G+F VLV   L   GLD+PEC LV 
Sbjct: 445 KDVVFKLEARGMKATELHGDLGKLARSTVLKKFKDGEFRVLVTNELSARGLDVPECDLVI 504

Query: 656 ILD 658
            LD
Sbjct: 505 NLD 507


>gi|116199007|ref|XP_001225315.1| eukaryotic initiation factor 4A-12 [Chaetomium globosum CBS 148.51]
 gi|118573324|sp|Q2GWJ5|FAL1_CHAGB RecName: Full=ATP-dependent RNA helicase FAL1
 gi|88178938|gb|EAQ86406.1| eukaryotic initiation factor 4A-12 [Chaetomium globosum CBS 148.51]
          Length = 394

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R
Sbjct: 259 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 313

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 314 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 359


>gi|309799277|ref|ZP_07693525.1| transcription-repair coupling factor [Streptococcus infantis
           SK1302]
 gi|308117122|gb|EFO54550.1| transcription-repair coupling factor [Streptococcus infantis
           SK1302]
          Length = 570

 Score = 44.7 bits (104), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 89/193 (46%), Gaps = 13/193 (6%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QLLLG++GS K+  +A   +  Q   +VM      A +L ++  +    + V      Y 
Sbjct: 30  QLLLGLSGSAKSLAIASSAKN-QDKILVMTSTYGEAERLVNDLISILGSDMV------YP 82

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
           +   ++  P  +  +  +  I  +++ +R     S   +   +V +  +    +   + +
Sbjct: 83  FLVDDS--PMVEFLVSSQDKIFSRVEALRFLRDES---QKGILVCNLAASRLFLPDPQVF 137

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
              I++L+IG   EQ EL + L+   YK+      +G F + GD ++IF +  +    R+
Sbjct: 138 DNSILKLEIGQECEQSELKNQLISLGYKKVTQVQSQGEFSLRGDILDIFETS-QLYPNRI 196

Query: 351 SMFGNDIEEISEF 363
             FG++I+ I EF
Sbjct: 197 EFFGDEIDGIREF 209


>gi|226355564|ref|YP_002785304.1| transcription-repair coupling factor [Deinococcus deserti VCD115]
 gi|226317554|gb|ACO45550.1| putative transcription-repair coupling factor [Deinococcus deserti
           VCD115]
          Length = 1041

 Score = 44.7 bits (104), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 593 RMAEDLTEYLYERNI----RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           R+A      LY RN+    R+   H  +   E  EI+     G FDVL+   ++  GLDI
Sbjct: 724 RIASIGARSLYLRNLVPEARIGVAHGRMNEEELEEIMLGFEQGAFDVLLSTTIVETGLDI 783

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQ 698
           PE   + I  AD+ G       L Q  GR  R   +    + Y   +T++ Q
Sbjct: 784 PEANTILIERADRLGL----AQLYQLRGRVGRRAQTAYAYLFYPPRMTENAQ 831


>gi|19113315|ref|NP_596523.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces pombe 972h-]
 gi|10720389|sp|P24782|DBP2_SCHPO RecName: Full=ATP-dependent RNA helicase dbp2; AltName:
           Full=p68-like protein
 gi|173419|gb|AAA35319.1| p68 RNA helicase [Schizosaccharomyces pombe]
 gi|3810840|emb|CAA21801.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces pombe]
          Length = 550

 Score = 44.7 bits (104), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 2/116 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TKR+A+D+T +L +       +H +    ER  ++ + R GK  ++V  ++  
Sbjct: 371 KVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVAS 430

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            G+D+   G+  + + D  G        I   GRA     +     +D   ++ +L
Sbjct: 431 RGIDVK--GITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQAREL 484


>gi|116193555|ref|XP_001222590.1| hypothetical protein CHGG_06495 [Chaetomium globosum CBS 148.51]
 gi|88182408|gb|EAQ89876.1| hypothetical protein CHGG_06495 [Chaetomium globosum CBS 148.51]
          Length = 602

 Score = 44.7 bits (104), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 36/65 (55%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V +KR AE++ ++L+   +    MH +   LER   +R  R GK+ +L+   +  
Sbjct: 363 RTIIFVNSKRAAEEVDDFLFNLGMPCTSMHGDRNQLEREAAMRGFRGGKWPILIATGVTA 422

Query: 644 EGLDI 648
            G+D+
Sbjct: 423 RGIDV 427


>gi|70986940|ref|XP_748956.1| DEAD/DEAH box helicase [Aspergillus fumigatus Af293]
 gi|66846586|gb|EAL86918.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus Af293]
 gi|159123274|gb|EDP48394.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus A1163]
          Length = 690

 Score = 44.7 bits (104), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLVA 655
           LTE      I  RY+ ++     R+E +R  R G++ VL+   L  EG DIP  +C L+A
Sbjct: 319 LTETFRNYGIDARYITAKTPKDVRMEQLRAFRNGEYPVLLNCGLFTEGTDIPNIDCVLLA 378

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR 680
                     RS+  LIQ IGR  R
Sbjct: 379 -------RPTRSRNLLIQMIGRGLR 396


>gi|322391161|ref|ZP_08064633.1| competence protein FA [Streptococcus peroris ATCC 700780]
 gi|321145914|gb|EFX41303.1| competence protein FA [Streptococcus peroris ATCC 700780]
          Length = 432

 Score = 44.7 bits (104), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 6/127 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           + G  +L+     +  E L E L E+  + +       T +R+E ++  R  K  +L+  
Sbjct: 299 KTGYPLLVFASEIKKGEKLKEILQEQFPKEKIGFVSSVTEDRLEQVQAFRDRKLTILIST 358

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN---SKVILYADTITKS 696
            +L  G+  P C  V +++A+   F  +K+SLIQ  GR  R+++     +I + D +  S
Sbjct: 359 TILERGVTFP-CVDVCVVEANHRLF--TKSSLIQIGGRVGRSIDRPTGDLIFFHDGLNGS 415

Query: 697 IQLAIDE 703
           I+ AI E
Sbjct: 416 IKKAIKE 422


>gi|269926755|ref|YP_003323378.1| ATP-dependent DNA helicase RecG [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790415|gb|ACZ42556.1| ATP-dependent DNA helicase RecG [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 786

 Score = 44.7 bits (104), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 6/98 (6%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E L +Y++  ++R+  +H  +K  E+ E++   RLG+  VLV   ++  G+D+P   ++ 
Sbjct: 600 ERLQKYVFP-DLRLGLLHGRMKPREKDEVMERFRLGELQVLVSTAVVEVGIDVPNATVML 658

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADT 692
           I  AD+ G       L Q  GR  R    S  +L +D+
Sbjct: 659 IEGADRFGL----AQLHQFRGRVGRGTEKSYCLLLSDS 692


>gi|254524540|ref|ZP_05136595.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas sp. SKA14]
 gi|219722131|gb|EED40656.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas sp. SKA14]
          Length = 829

 Score = 44.7 bits (104), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 16/135 (11%)

Query: 554 LVDPPVEIR-SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------R 605
           +++P + +R SAR+Q   +     +A + GL+ L+   T+ M E LT+YL +       +
Sbjct: 284 VINPDLGLRASARSQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRK 340

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
             R+R         ER E  R +R G  D +V  + L  G+DI    +V +      G+ 
Sbjct: 341 PPRIRAYRGGYLPTERRETERAMRAGNIDGIVSTSALELGVDIGSLDVVIL-----NGYP 395

Query: 666 RSKTSLIQTIGRAAR 680
            S  +  Q  GRA R
Sbjct: 396 GSVAATWQRFGRAGR 410


>gi|205277319|ref|NP_001034520.2| vasa RNA helicase [Tribolium castaneum]
 gi|270011102|gb|EFA07550.1| vasa [Tribolium castaneum]
          Length = 627

 Score = 44.7 bits (104), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TKR A+ L  +L E+NI+   +H +    ER + + D + G   VLV   +  
Sbjct: 459 RTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFKTGHRKVLVATGVAA 518

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDI +   V   D  K     S    +  IGR  R  N
Sbjct: 519 RGLDIKDVQHVINYDLPK-----SIDEYVHRIGRTGRVGN 553


>gi|116252136|ref|YP_767974.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256784|emb|CAK07874.1| putative ATP-dependent DNA helicase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 701

 Score = 44.7 bits (104), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 150 SGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTF----TMAKVIEAMQRPAIVMAPNKI 204
           +G Q  AIA++LK +   E+ ++LL G  GSGKT      MA VIE+  + A++MAP +I
Sbjct: 275 TGSQNEAIAEVLKDMAGNERMLRLLQGDVGSGKTLVALMAMAAVIESGGQ-AVLMAPTEI 333

Query: 205 LAAQLYSEFKNF 216
           LA Q ++    F
Sbjct: 334 LARQHHATISKF 345


>gi|327404711|ref|YP_004345549.1| primosomal protein N' [Fluviicola taffensis DSM 16823]
 gi|327320219|gb|AEA44711.1| primosomal protein N' [Fluviicola taffensis DSM 16823]
          Length = 827

 Score = 44.7 bits (104), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 18/141 (12%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           +L   T+++ +DL+  L +  I    + +       +E+I+     + DVL+G  ++ +G
Sbjct: 584 MLGFGTEKVEDDLSLILPDVRIGRMDLETTRNKNGHLELIQAFENREIDVLIGTQMVAKG 643

Query: 646 LDIPECGLVAILDADK-------EGFLRSKTSLIQTIGRAA-RNVNSKVILYAD-----T 692
           LD    GLV ILDAD          F R+   + Q  GR+  RN   KVI+         
Sbjct: 644 LDFDHVGLVGILDADLMLNKTDFRAFERAFQLMTQVAGRSGRRNKRGKVIIQTGNPDHWV 703

Query: 693 ITKSIQ-----LAIDETTRRR 708
           I K I+      AI+E   RR
Sbjct: 704 IQKVIEHDYDSFAINEIVERR 724


>gi|296136685|ref|YP_003643927.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
 gi|295796807|gb|ADG31597.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
          Length = 666

 Score = 44.7 bits (104), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 11/161 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK+  E+L E L  R      ++ +V    R  +++ L+ G+ D+LV  ++   
Sbjct: 249 MIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATDVAAR 308

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R+ ++  IL+     + +  AI+
Sbjct: 309 GLDVERISHVVNYDIPTDTESYVHR----IGRTGRAGRSGDA--ILFVTPRERHLLRAIE 362

Query: 703 ETTRRREKQLEHNKKHNINPQSVK---EKIMEVIDPILLED 740
             TR+   Q++      +N   +    E+I E  +   LED
Sbjct: 363 RATRQPITQMQLPSTEAVNDSRISRFMERITEAREQEGLED 403


>gi|189193873|ref|XP_001933275.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187978839|gb|EDU45465.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 686

 Score = 44.7 bits (104), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L  +      +H +    ER + +   R G+  +LV   +   G
Sbjct: 458 LIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRTGRCPILVATAVAARG 517

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 518 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 553


>gi|22330935|ref|NP_187583.2| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75328099|sp|Q84TG1|RH57_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 57
 gi|29028778|gb|AAO64768.1| At3g09720 [Arabidopsis thaliana]
 gi|110742885|dbj|BAE99340.1| RNA helicase like protein [Arabidopsis thaliana]
 gi|332641282|gb|AEE74803.1| DEAD-box ATP-dependent RNA helicase 57 [Arabidopsis thaliana]
          Length = 541

 Score = 44.7 bits (104), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L + L   NIR   +HS++   ER   +   R G+  VL+  +++  
Sbjct: 383 VLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIAR 442

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G+  +++ D   F  S ++ I  IGR+ R
Sbjct: 443 GMDFK--GINCVINYD---FPDSASAYIHRIGRSGR 473


>gi|325116173|emb|CBZ51727.1| putative ATP-dependent helicase, putaive [Neospora caninum
           Liverpool]
          Length = 395

 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK   E L + + E N  V  MH ++   ER EI+R  R
Sbjct: 254 DLYDTLTIT-----QAVIFCNTKAKVEWLAQKMKEANFTVSRMHGDMPQQERDEIMRQFR 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   GLD+ +  LV   D        S+   I  IGR+ R
Sbjct: 309 GGQSRVLIATDVWGRGLDVQQVSLVINYDLPN-----SRELYIHRIGRSGR 354


>gi|304390841|ref|ZP_07372793.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315656383|ref|ZP_07909272.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304325724|gb|EFL92970.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492942|gb|EFU82544.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 525

 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL I+ T  TKR  + L++ L ER      +H ++    R   +R  R GK DVLV
Sbjct: 274 ARNRGLTIIFT-RTKRTCQRLSDELAERGFATGAIHGDLGQNARERALRAFRHGKVDVLV 332

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
             ++   G+D+ +   V   +  ++       + I  IGR AR  N
Sbjct: 333 ATDVAARGIDVDDVTHVINYECPED-----DKTYIHRIGRTARAGN 373


>gi|295106692|emb|CBL04235.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 530

 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 36/75 (48%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RI++   TK   ED  E L +   R   +HS+     R   + + R GK  +LV  ++L 
Sbjct: 245 RIIVFARTKNRTEDCAEALCDAGFRAESIHSDKSQGARRRALENFRRGKTSILVATDVLA 304

Query: 644 EGLDIPECGLVAILD 658
            G+D+P+   V   D
Sbjct: 305 RGIDVPDVDHVINFD 319


>gi|282865077|ref|ZP_06274130.1| type III restriction protein res subunit [Streptomyces sp. ACTE]
 gi|282560000|gb|EFB65549.1| type III restriction protein res subunit [Streptomyces sp. ACTE]
          Length = 1046

 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           AR  V+ V D++  +  + +R L   ++   A  + ++     +    +  E    ER  
Sbjct: 544 ARLVVQAVKDKV--SDPRIMRALGFCVSVAHAHFMADFFRRAGLNAVALSGETPRHERKS 601

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            + DLR G   V+  ++L  EGLD+P+   + +L         S T  +Q +GR  R   
Sbjct: 602 ALDDLRAGTVQVIFSVDLFNEGLDVPDVDTLLLLRPTS-----SATVFLQQLGRGLRRTQ 656

Query: 684 SKVIL 688
            K +L
Sbjct: 657 GKAVL 661


>gi|255717290|ref|XP_002554926.1| KLTH0F17050p [Lachancea thermotolerans]
 gi|238936309|emb|CAR24489.1| KLTH0F17050p [Lachancea thermotolerans]
          Length = 478

 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 5/98 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L +   +V  +H +++  ER  +I D R G+  VL+  N+L  G
Sbjct: 330 IIFVQTKQTANVLYAKLKQAGHQVSILHGDLQASERDRLIDDFREGRSKVLITTNVLARG 389

Query: 646 LDIPECGLVAILDADKEGFLRSK---TSLIQTIGRAAR 680
           +DIP   +V  ++ D     + K   ++ I  IGR  R
Sbjct: 390 IDIPTVSMV--VNYDLPTTFQGKADPSTYIHRIGRTGR 425


>gi|126309196|ref|XP_001369799.1| PREDICTED: similar to eukaryotic initiation factor 4AI [Monodelphis
           domestica]
          Length = 460

 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 335 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 394

Query: 651 CGLV 654
             LV
Sbjct: 395 VSLV 398


>gi|154175477|ref|YP_001407964.1| ATP-dependent DNA helicase RecG [Campylobacter curvus 525.92]
 gi|112803336|gb|EAU00680.1| molybdenum-pterin binding protein [Campylobacter curvus 525.92]
          Length = 604

 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 147 YHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT-MAKVIEAMQRPAIVMAPNKI 204
           + P+ DQ  AI  +   + H   K ++++G  GSGKT   +A  +      A++MAP  I
Sbjct: 226 FAPTNDQLNAINDIRTDLAHGEAKRRVVMGDVGSGKTLVILAAALSVYPGCAVLMAPTSI 285

Query: 205 LAAQLYSEFKNFFP 218
           L  Q+Y+E K   P
Sbjct: 286 LCEQIYNEAKRLLP 299


>gi|3097266|emb|CAA76677.1| translation initiation factor [Pisum sativum]
          Length = 407

 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L++L +V TKR  + LTE +   N  V  MH ++   ER  I+ + R G   VL+  ++ 
Sbjct: 274 LKLLYSVNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVLITTDVW 333

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 334 ARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 366


>gi|6682259|gb|AAF23311.1|AC016661_36 putative RNA helicase [Arabidopsis thaliana]
          Length = 545

 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L + L   NIR   +HS++   ER   +   R G+  VL+  +++  
Sbjct: 387 VLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIAR 446

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G+  +++ D   F  S ++ I  IGR+ R
Sbjct: 447 GMDFK--GINCVINYD---FPDSASAYIHRIGRSGR 477


>gi|322796814|gb|EFZ19232.1| hypothetical protein SINV_01003 [Solenopsis invicta]
          Length = 1201

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 12/140 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  +D+T+ +     +   +H +    ER  ++++ R GK  +LV  ++  
Sbjct: 361 KTIIFVETKRKVDDITKNIRREGWQAVSIHGDKNQQERDHVLQEFRNGKAPILVATDVAA 420

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLD+ +   V   D     F  S    I  IGR  R   +    YA   T +++ A D 
Sbjct: 421 RGLDVDDVKYVINFD-----FPSSSEDYIHRIGRTGRKRQTGT-AYAFFTTHNMKHAGDL 474

Query: 704 TTRRREKQLEHNKKHNINPQ 723
               RE         N+NP+
Sbjct: 475 IEVLRE------AGQNVNPR 488


>gi|319637789|ref|ZP_07992555.1| ATP-dependent DNA helicase RecG [Neisseria mucosa C102]
 gi|317400944|gb|EFV81599.1| ATP-dependent DNA helicase RecG [Neisseria mucosa C102]
          Length = 729

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 9/111 (8%)

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L   T+ +A+ L   L E NI +  +H  +K  E+ E++    +G+ +VLV   ++  G+
Sbjct: 537 LQTATETLAQ-LQAALPELNIGL--VHGRMKAAEKAEVMAQFAVGRLNVLVATTVIEVGV 593

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           D+P   L+ I  A++ G       L Q  GR  R       V+L+A+ +++
Sbjct: 594 DVPNAALMVIEHAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPLSE 640


>gi|304385371|ref|ZP_07367716.1| helicase [Pediococcus acidilactici DSM 20284]
 gi|304328578|gb|EFL95799.1| helicase [Pediococcus acidilactici DSM 20284]
          Length = 948

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 9/136 (6%)

Query: 554 LVDPPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE--DLTEYLYERNIRV 609
           L+D    +R   A+ +++ V ++I+     G R+   +   R AE  ++ + +  +    
Sbjct: 410 LIDEKTPLRHLLAQERMDYVAEQIDYYGHDGERVYGLIFCSRQAEAVEVAQIMTAKGHPT 469

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           R +       ER +IIR    G+ + LV +++  EG+DIP+   V +L   +     S  
Sbjct: 470 RALTGNTSVSEREKIIRRFEKGELEYLVTVDIFNEGVDIPKVNQVIMLRNTE-----SSI 524

Query: 670 SLIQTIGRAARNVNSK 685
             IQ +GR  R    K
Sbjct: 525 IFIQQLGRGLRKAPEK 540


>gi|190572200|ref|YP_001970045.1| putative helicase [Stenotrophomonas maltophilia K279a]
 gi|190010122|emb|CAQ43730.1| putative helicase [Stenotrophomonas maltophilia K279a]
          Length = 829

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 16/135 (11%)

Query: 554 LVDPPVEIR-SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------R 605
           +++P + +R SAR+Q   +     +A + GL+ L+   T+ M E LT+YL +       +
Sbjct: 284 VINPDLGLRASARSQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRK 340

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
             R+R         ER E  R +R G  D +V  + L  G+DI    +V +      G+ 
Sbjct: 341 PPRIRAYRGGYLPTERRETERAMRAGNIDGIVSTSALELGVDIGSLDVVIL-----NGYP 395

Query: 666 RSKTSLIQTIGRAAR 680
            S  +  Q  GRA R
Sbjct: 396 GSVAATWQRFGRAGR 410


>gi|170730951|ref|YP_001776384.1| ATP-dependent DNA helicase RecG [Xylella fastidiosa M12]
 gi|167965744|gb|ACA12754.1| ATP-dependent DNA helicase [Xylella fastidiosa M12]
          Length = 718

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +K  E+   +R  +  + DVLV   ++  G+D+P   L+ I +A++ G  
Sbjct: 542 GVRVGLVHGRMKAAEKQRTMRAFKYNEIDVLVATTVIEVGVDVPNASLMIIENAERLGL- 600

Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689
                L Q  GR  R   V+S V+LY
Sbjct: 601 ---AQLHQLRGRVGRGSVVSSCVLLY 623


>gi|149244712|ref|XP_001526899.1| eukaryotic initiation factor 4A-12 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032453|sp|A5DWJ1|FAL1_LODEL RecName: Full=ATP-dependent RNA helicase FAL1
 gi|146449293|gb|EDK43549.1| eukaryotic initiation factor 4A-12 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 399

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD  NL   Q +   +   TK     LT+ + ++N  V  MH ++K  ER  I+ D R
Sbjct: 258 DLYD--NLTITQAV---IFCNTKIKVNWLTDQMRKQNFTVVAMHGDMKQEERDAIMNDFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D   DKE +       I  IGR+ R
Sbjct: 313 SGNSRVLISTDVWARGIDVQQISLVINYDLPLDKENY-------IHRIGRSGR 358


>gi|325927901|ref|ZP_08189125.1| ATP-dependent DNA helicase RecG [Xanthomonas perforans 91-118]
 gi|325541741|gb|EGD13259.1| ATP-dependent DNA helicase RecG [Xanthomonas perforans 91-118]
          Length = 717

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +K  E+ + + D + G+ D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 541 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 599

Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689
                L Q  GR  R    +S V+LY
Sbjct: 600 ---AQLHQLRGRVGRGAAASSCVLLY 622


>gi|325680276|ref|ZP_08159836.1| primosomal protein N' [Ruminococcus albus 8]
 gi|324107985|gb|EGC02241.1| primosomal protein N' [Ruminococcus albus 8]
          Length = 817

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 88/207 (42%), Gaps = 14/207 (6%)

Query: 25  LDYFSFEEKQLEVDKTMVADA-------MRRIRSEAGKHRKNAAKRMLIHQRENTASKGE 77
           +D+    E Q E+DK +   A       +  +  +       + KR +  +    A+  E
Sbjct: 141 IDFLEITEDQQEIDKFLDIKAFPERKKPLDMLIDKGFVEETQSFKRKVGDESVKMAALAE 200

Query: 78  FQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWS---INNH 134
               + ++  +K+  E+ E+    SV+ L  +      ++K        R +    + + 
Sbjct: 201 GYEDAELTPKQKKVVELLEECGAASVKELCYMTGCTATIIKRLCDKNAVRVFEQEVMRDT 260

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKTFTMAKVIEA-- 191
             +IT  +   D   + +Q AA   ++  I + +    LL GVTGSGKT    KVI+A  
Sbjct: 261 LGEITERESPDDITLNEEQTAAFDGIMALIRAGKPAGALLYGVTGSGKTSVFIKVIDAVL 320

Query: 192 -MQRPAIVMAPNKILAAQLYSEFKNFF 217
            M R A+++ P   L  Q+ + FK  F
Sbjct: 321 KMGRTAMMLVPEISLTPQMVARFKVLF 347


>gi|253575858|ref|ZP_04853192.1| helicase domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251844652|gb|EES72666.1| helicase domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 387

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 6/127 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q+G +I + V   R     TE L      +    +     +R E +   R G+  +LV  
Sbjct: 244 QRGAQIFIFVTRIRQIAAFTELLRTYFPGLPIEGTSSIDPDRSEKVLAFREGRIRMLVTT 303

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NVNSKVILYADTITKS 696
            +L  G+ +P+   V I+DAD + F   + SL+Q  GRA R   + N KV+  A   TKS
Sbjct: 304 TILERGVTVPKSD-VYIVDADSDLF--DEASLVQMAGRAGRSKDDPNGKVVFAAPAWTKS 360

Query: 697 IQLAIDE 703
            + AI +
Sbjct: 361 QRDAIRQ 367


>gi|228472537|ref|ZP_04057297.1| primosomal protein N` [Capnocytophaga gingivalis ATCC 33624]
 gi|228275950|gb|EEK14706.1| primosomal protein N` [Capnocytophaga gingivalis ATCC 33624]
          Length = 818

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+++ E+L ++  +  I    M +        +II     G+ D+LVG  ++ +GLD P+
Sbjct: 579 TEKVEEELLQFFPKARIERMDMDTTKGKYGFEKIIHHFERGETDILVGTQMVSKGLDFPK 638

Query: 651 CGLVAILDADKEGFL---------RSKTSLIQTIGRAARNVNSKVIL 688
            GLV +++AD   FL         R+   L    GRA R    +V++
Sbjct: 639 VGLVGVMNADL--FLHQPDFRASERAFQLLSHIAGRAGRKEQGRVLI 683


>gi|195977782|ref|YP_002123026.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974487|gb|ACG62013.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 538

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332


>gi|115437508|ref|XP_001217828.1| eukaryotic initiation factor 4A-12 [Aspergillus terreus NIH2624]
 gi|121734188|sp|Q0CAS8|FAL1_ASPTN RecName: Full=ATP-dependent RNA helicase fal1
 gi|114188643|gb|EAU30343.1| eukaryotic initiation factor 4A-12 [Aspergillus terreus NIH2624]
          Length = 399

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R
Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGR 357


>gi|81429227|ref|YP_396228.1| putative ATP-dependent RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610870|emb|CAI55922.1| Putative ATP-dependent RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 530

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++   +R+ +++  + G+ DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKARGYNAEGIHGDLSQQKRMSVLKSFKAGRLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
            G+  + + D     +   S +  IGR  R   S V
Sbjct: 306 SGVTHVYNYD---IPQDPDSYVHRIGRTGRAGKSGV 338


>gi|37360146|dbj|BAC98051.1| mKIAA0928 protein [Mus musculus]
          Length = 1475

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 49  RSKQMEAEFRKQE--EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTE----- 101

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GRA   +++ V+L ADT
Sbjct: 102 YRSYVQSKGRARAPISNYVML-ADT 125


>gi|2558535|emb|CAA72735.1| RNA helicase (DEAD box) [Danio rerio]
          Length = 700

 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 5/108 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A    R ++ V TKR A+ +  +L +  I    +H + +  ER + + D RLG   VL
Sbjct: 508 LRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGHCPVL 567

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           V  ++   GLDI +   V   D        S    +  IGR  R  N+
Sbjct: 568 VATSVAARGLDIEQVQHVVNFD-----MPSSIDEYVHRIGRTGRCGNT 610


>gi|332523769|ref|ZP_08400021.1| helicase C-terminal domain protein [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332315033|gb|EGJ28018.1| helicase C-terminal domain protein [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 455

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 2/54 (3%)

Query: 605 RNIRVRYMHSEVKT--LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           ++I +  +H++ KT   ER +I++D R GK  V+  ++L+ EG D+P+C +  +
Sbjct: 210 QSIGINAIHADAKTPKAERDKIMQDFRDGKIQVVCNVDLISEGFDVPDCAVTIL 263


>gi|304403848|ref|ZP_07385510.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304346826|gb|EFM12658.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 546

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L +R      +H ++   +R  ++R  R G  DVLV  ++   GLD+  
Sbjct: 249 TKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDV-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  +++ D     +   S +  IGR  R
Sbjct: 307 SGVTHVINFD---LPQDPESYVHRIGRTGR 333


>gi|225619936|ref|YP_002721193.1| transcription-repair coupling factor [Brachyspira hyodysenteriae
           WA1]
 gi|225214755|gb|ACN83489.1| transcription-repair coupling factor [Brachyspira hyodysenteriae
           WA1]
          Length = 1247

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 2/151 (1%)

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVES 289
           Y  P  Y P  DT    + S    I + R +    L+ +  CI++++V+ +   + + + 
Sbjct: 74  YNIPNYYFPDYDTVPFTKMSPVSDIAQDRINILYKLINKEKCIIITTVNAVTRKLPNRDD 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
             ++ + L +GD ++   L  +L    Y  +     +GT  V G  +++F     +   R
Sbjct: 134 LKKLPIHLNVGDKLDLDNLRLTLYDLGYVIEREVAEKGTASVRGSIVDVFSVEYNN-PIR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           + +F ++IE I  F    G+  ++VE I IY
Sbjct: 193 IELFDDEIESIRLFNIEDGRSFKSVENIIIY 223


>gi|171688604|ref|XP_001909242.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944264|emb|CAP70374.1| unnamed protein product [Podospora anserina S mat+]
          Length = 678

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTE      I  RY+  +    ER E +   +  +F VL+   +  EG DIP    V + 
Sbjct: 312 LTERFRHHGIDARYVFGDTPAKERAETLEKFKKKEFPVLLNCGVFTEGTDIPNIDCVVLA 371

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
                   RS+  LIQ IGR  R    K   +   +  S+ + I
Sbjct: 372 RP-----TRSRNLLIQMIGRGMRLHEGKENCHVIDMVASLDVGI 410


>gi|19309904|emb|CAC84069.1| vasa-like protein [Danio rerio]
          Length = 715

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 5/108 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A    R ++ V TKR A+ +  +L +  I    +H + +  ER + + D RLG   VL
Sbjct: 523 LRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGHCPVL 582

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           V  ++   GLDI +   V   D        S    +  IGR  R  N+
Sbjct: 583 VATSVAARGLDIEQVQHVVNFD-----MPSSIDEYVHRIGRTGRCGNT 625


>gi|325297782|ref|YP_004257699.1| DEAD/DEAH box helicase domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324317335|gb|ADY35226.1| DEAD/DEAH box helicase domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 418

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 9/106 (8%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q+  R+++   +K   +++T+ L    + V  MHS+++  +R EI+ + R G+ ++LV  
Sbjct: 242 QEPERVIIFASSKLKVKEVTKALKRLKLNVGEMHSDLEQSQRDEIMHEFRNGRINMLVAT 301

Query: 640 NLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVN 683
           +++  G+DI +  LV   D   D E +       +  IGR AR  N
Sbjct: 302 DIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANN 340


>gi|121634295|ref|YP_974540.1| putative DNA helicase [Neisseria meningitidis FAM18]
 gi|120866001|emb|CAM09738.1| putative DNA helicase [Neisseria meningitidis FAM18]
 gi|325131701|gb|EGC54406.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M6190]
 gi|325137717|gb|EGC60294.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis ES14902]
          Length = 680

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E L   L E NI +  +H  +K  E+ E++     G+ +VLV   ++  G+D+P   L+ 
Sbjct: 496 EQLQTALPELNIGL--VHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMV 553

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I  A++ G       L Q  GR  R       V+L+A+ +++
Sbjct: 554 IEHAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPLSE 591


>gi|15791152|ref|NP_280976.1| Hef nuclease [Halobacterium sp. NRC-1]
 gi|169236908|ref|YP_001690108.1| Hef nuclease [Halobacterium salinarum R1]
 gi|10581766|gb|AAG20456.1| ATP-dependent RNA helicase homolog eIF-4A [Halobacterium sp. NRC-1]
 gi|167727974|emb|CAP14762.1| nuclease domain protein / probable ATP-dependent helicase
           [Halobacterium salinarum R1]
          Length = 784

 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 16/145 (11%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-------HSEVKTLERIEIIRDL 628
            L  + G R+++   ++  AE LT +L E     R++          +   E+ E + + 
Sbjct: 364 TLGIEDGDRVIVFTESRDTAEALTAFLGEHFDTRRFVGQGDADGSDGMTQTEQRETLAEF 423

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           R G F+VLV  ++  EGLD+PE  LV   +      + +    +Q  GR  R    + V+
Sbjct: 424 RNGDFEVLVSTSVAEEGLDVPEVDLVLFFEP-----VPTAIRSVQRKGRTGRQTAGRVVV 478

Query: 688 LYADTITKSIQLAIDETTRRREKQL 712
           L A+         I   +RRRE+++
Sbjct: 479 LLAEDTRDEAYFWI---SRRREQEM 500


>gi|323127665|gb|ADX24962.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 539

 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332


>gi|312863296|ref|ZP_07723534.1| ATP-dependent DNA helicase RecG [Streptococcus vestibularis F0396]
 gi|311100832|gb|EFQ59037.1| ATP-dependent DNA helicase RecG [Streptococcus vestibularis F0396]
          Length = 676

 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 11/117 (9%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + ++LT++ +  +  V  MH  +K  E+ +I++D +  K  +LV   ++  G+++P   +
Sbjct: 489 LHQELTDF-FGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATV 547

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA----DTITKSIQLAIDETT 705
           + I+DAD+ G     + L Q  GR  R +  S  +L A    DT  K +Q A+ ETT
Sbjct: 548 MVIMDADRFGL----SQLHQLRGRVGRGDKQSYCVLVANPKNDTGKKRMQ-AMCETT 599


>gi|270292353|ref|ZP_06198564.1| ATP-dependent DNA helicase RecG [Streptococcus sp. M143]
 gi|270278332|gb|EFA24178.1| ATP-dependent DNA helicase RecG [Streptococcus sp. M143]
          Length = 671

 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H ++K+ E+ +I+++ +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQEFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|237833949|ref|XP_002366272.1| RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211963936|gb|EEA99131.1| RNA helicase, putative [Toxoplasma gondii ME49]
          Length = 1214

 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 7/137 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P E R+       V  E+ +A +   + ++ V T++  E L ++ + ++ RV  +H+ ++
Sbjct: 685 PEEGRAREEMHPRVASELLVAEEDTHKCIVFVETQQEVEQLAQHPFLQSWRVAPLHAGLE 744

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             +R   +   R G+  VL+  +++  GLD+P   LV  L         + ++ I   GR
Sbjct: 745 QEQRDTNLSRFRSGEAPVLIATDVVARGLDVPAVTLVVHLHPPV-----NPSTYIHRSGR 799

Query: 678 AAR--NVNSKVILYADT 692
           A R  +V   V+LY+ +
Sbjct: 800 AGRGGHVGDSVVLYSSS 816


>gi|199597141|ref|ZP_03210573.1| RecG-like helicase [Lactobacillus rhamnosus HN001]
 gi|258508655|ref|YP_003171406.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus GG]
 gi|199591945|gb|EDZ00020.1| RecG-like helicase [Lactobacillus rhamnosus HN001]
 gi|257148582|emb|CAR87555.1| ATP-dependent DNA helicase RecG [Lactobacillus rhamnosus GG]
 gi|259649961|dbj|BAI42123.1| DNA helicase RecG [Lactobacillus rhamnosus GG]
          Length = 679

 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H ++K  E+ +I+R    G   VLV   ++  G+D+P   ++AI DAD+ G    
Sbjct: 501 QVALLHGKMKPDEKDQIMRAFSHGDIAVLVSTTVVEVGVDVPNATVMAIFDADRFGL--- 557

Query: 668 KTSLIQTIGRAARNVN-SKVILYAD 691
            + L Q  GR  R    ++ +L AD
Sbjct: 558 -SQLHQLRGRVGRGSKAAQCLLIAD 581


>gi|253700922|ref|YP_003022111.1| ATP-dependent DNA helicase RecG [Geobacter sp. M21]
 gi|251775772|gb|ACT18353.1| ATP-dependent DNA helicase RecG [Geobacter sp. M21]
          Length = 772

 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 14/121 (11%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           +MAE L + ++  ++RV  +H  +   E+  ++++ + G  D+LV   ++  G+D+P   
Sbjct: 576 QMAEHLAQEVFP-DLRVAVLHGRMPAAEKEAVMKEFKAGSTDILVATTVIEVGIDVPNAT 634

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           ++ I  A++ G     + L Q  GR  R             ++ I LA D+ +   +K+L
Sbjct: 635 VMVIEHAERFGL----SQLHQLRGRVGRGSER---------SRCILLAGDKLSEDGQKRL 681

Query: 713 E 713
           E
Sbjct: 682 E 682


>gi|156052539|ref|XP_001592196.1| eukaryotic initiation factor 4A-12 [Sclerotinia sclerotiorum 1980]
 gi|160385735|sp|A7EM88|FAL1_SCLS1 RecName: Full=ATP-dependent RNA helicase fal1
 gi|154704215|gb|EDO03954.1| eukaryotic initiation factor 4A-12 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 399

 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D   ++E +       I  IGR+ R
Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPVNRENY-------IHRIGRSGR 357


>gi|110666996|ref|YP_656807.1| Hef nuclease [Haloquadratum walsbyi DSM 16790]
 gi|109624743|emb|CAJ51150.1| probable nuclease domain protein/ probable ATP-dependent RNA
           helicase [Haloquadratum walsbyi DSM 16790]
          Length = 851

 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 16/146 (10%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM------HSEVKTL-ERIEIIRDL 628
            L  + G R+++   ++  AE LTE+L       R++       SE  T  E+ + +   
Sbjct: 365 TLGIEGGERVIIFTESRDTAEALTEFLSASFDVQRFVGQNDTGRSEGMTQREQQKALTAF 424

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           R G+F+VL+  ++  EGLD+PE  LV   +      +RS    IQ  GR  R    + V+
Sbjct: 425 RSGEFEVLISTSVAEEGLDVPEVDLVLFFEPVPTA-IRS----IQRKGRTGRQTEGRVVV 479

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
           L A+         I   +RRR+K++E
Sbjct: 480 LLAEDTRDEAYFWI---SRRRQKKME 502


>gi|323465937|gb|ADX69624.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           helveticus H10]
          Length = 453

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+   TK+  ++LT YL ++ ++V  +H  V   ER   +R +  G+F  +V  +L   G
Sbjct: 248 LVFANTKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQYVVASDLAARG 307

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           LDI    LV   +       R    +I  IGR  RN
Sbjct: 308 LDIDGVSLVINYE-----IPRDIEFVIHRIGRTGRN 338


>gi|322412126|gb|EFY03034.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 539

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332


>gi|306827075|ref|ZP_07460372.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782]
 gi|304430709|gb|EFM33721.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782]
          Length = 539

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332


>gi|294627104|ref|ZP_06705692.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294667377|ref|ZP_06732595.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292598537|gb|EFF42686.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292602818|gb|EFF46251.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 717

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +K  E+ + + D + G+ D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 541 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 599

Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689
                L Q  GR  R    +S V+LY
Sbjct: 600 ---AQLHQLRGRVGRGAAASSCVLLY 622


>gi|282917845|ref|ZP_06325595.1| helicase [Staphylococcus aureus subsp. aureus D139]
 gi|283767575|ref|ZP_06340490.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus H19]
 gi|282318130|gb|EFB48490.1| helicase [Staphylococcus aureus subsp. aureus D139]
 gi|283461454|gb|EFC08538.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus H19]
          Length = 953

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  LR GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLREGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            EG+DIPE   V +L   +   +      IQ +GR  R
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLR 544


>gi|260951197|ref|XP_002619895.1| hypothetical protein CLUG_01054 [Clavispora lusitaniae ATCC 42720]
 gi|238847467|gb|EEQ36931.1| hypothetical protein CLUG_01054 [Clavispora lusitaniae ATCC 42720]
          Length = 962

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           ++I+D + G +++LV  ++  EGLDI E  L+   D+       S    +Q +GR  RN 
Sbjct: 512 QLIKDFKKGSYNILVATSIGEEGLDIGEVDLIVCYDS-----TSSPIKNVQRMGRTGRNR 566

Query: 683 NSKVIL 688
           + KV+L
Sbjct: 567 DGKVLL 572


>gi|217034285|ref|ZP_03439702.1| hypothetical protein HP9810_885g16 [Helicobacter pylori 98-10]
 gi|216943257|gb|EEC22722.1| hypothetical protein HP9810_885g16 [Helicobacter pylori 98-10]
          Length = 621

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177
           N KI  P       N+S+ +  F     +  + DQ  AI ++   + S    + L++G  
Sbjct: 209 NAKIACP-------NNSERLKAFIASLPFKLTNDQQNAIKEIQSDLTSPIACKRLIIGDV 261

Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           G GKT   +A ++ A     ++MAP  ILA QLY+E   F P
Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|239917402|ref|YP_002956960.1| ATP-dependent DNA helicase RecG [Micrococcus luteus NCTC 2665]
 gi|281414113|ref|ZP_06245855.1| ATP-dependent DNA helicase RecG [Micrococcus luteus NCTC 2665]
 gi|239838609|gb|ACS30406.1| ATP-dependent DNA helicase RecG [Micrococcus luteus NCTC 2665]
          Length = 730

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  +   E+   ++    G+ DVLV   ++  G+D+P   ++A+LDAD  G  
Sbjct: 544 GLRIDAVHGRMDQAEQDAAMQAFARGETDVLVATTVVEVGVDVPNATVMAVLDADDFGL- 602

Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690
              ++L Q  GR  R   + V L A
Sbjct: 603 ---STLHQLRGRVGRGPGAAVCLLA 624


>gi|119499061|ref|XP_001266288.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Neosartorya fischeri NRRL 181]
 gi|142985577|sp|A1D071|FAL1_NEOFI RecName: Full=ATP-dependent RNA helicase fal1
 gi|119414452|gb|EAW24391.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Neosartorya fischeri NRRL 181]
          Length = 399

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R
Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGR 357


>gi|118442893|ref|YP_878819.1| helicase [Clostridium novyi NT]
 gi|118133349|gb|ABK60393.1| helicase, putative [Clostridium novyi NT]
          Length = 834

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 13/118 (11%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKF 633
           N    +  R L    +K+ A+ + +Y     +R    Y  SE +  +R E I  L  G+ 
Sbjct: 444 NYKKYKSTRALGFCTSKQHAKFMADYFNNAGVRACAVYSGSESEEFDRKEAISMLVKGEV 503

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLR---SKTSLIQTIGRAARNVNSKVIL 688
            VL  I++  EGLDIP   +V         FLR   S T  +Q +GR  R    K  L
Sbjct: 504 QVLFSIDMFNEGLDIPSIDMVM--------FLRPTESPTIFLQQLGRGLRKYQDKKYL 553


>gi|5270|emb|CAA36873.1| p68 protein [Schizosaccharomyces pombe]
          Length = 550

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 2/116 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TKR+A+D+T +L +       +H +    ER  ++ + R GK  ++V  ++  
Sbjct: 371 KVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVAS 430

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            G+D+   G+  + + D  G        I   GRA     +     +D   ++ +L
Sbjct: 431 RGIDVK--GITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQAREL 484


>gi|114047309|ref|YP_737859.1| transcription-repair coupling factor [Shewanella sp. MR-7]
 gi|113888751|gb|ABI42802.1| transcription-repair coupling factor [Shewanella sp. MR-7]
          Length = 1160

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 60/305 (19%), Positives = 132/305 (43%), Gaps = 36/305 (11%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           ++Q L  + G G+  T+A ++   +   +++  +   A  +  E       +A++  +  
Sbjct: 17  QMQTLSCLAGVGQAVTLASLVRQHKGTTLIVTSDTPTALSIELELNYLLAKSAIKVRLFP 76

Query: 229 YDYYQP-EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
                P +++ P  D   ++  +++ QI +  HS           +V+  V+ +      
Sbjct: 77  DRETLPYDSFSPHQDLISQRLETLS-QITQAEHS-----------VVIVPVTTLMMRLPP 124

Query: 288 ESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           +SY S  +  LK GD  +  ++   L    Y   +     G F + G  ++IFP+ + ++
Sbjct: 125 KSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGV-NM 183

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F +++E I  F P T +    V+ +++     +    PT ++A++  ++  + R
Sbjct: 184 PLRIELFDDEVETIRHFDPETQRSSTPVDAVRLLPAKEF----PTDSSAIEGFRQRYRRR 239

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
              + K     E + + Q ++ +L           IENY          +   TLF+Y+P
Sbjct: 240 FEVIVK-----EPESVYQLVSRNL-------MPAGIENYLPLFF-----DEVATLFDYLP 282

Query: 467 EDSLL 471
           +D+ L
Sbjct: 283 KDTQL 287


>gi|309389035|gb|ADO76915.1| ATP-dependent DNA helicase RecG [Halanaerobium praevalens DSM 2228]
          Length = 685

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 595 AEDLTEYL---YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           AE+L   L   + +N ++  +HS V  LE+ EI+   R GK D+L+   ++  G+D+   
Sbjct: 497 AEELYNNLKTGFFKNNKLALIHSSVPALEKKEIMEKFRAGKIDILIATTVIEVGVDVSNA 556

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            ++ I +A++ G       L Q  GR  R
Sbjct: 557 SIMIIENAERFGL----AQLHQLRGRVGR 581


>gi|298695752|gb|ADI98974.1| helicase, putative [Staphylococcus aureus subsp. aureus ED133]
          Length = 953

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  LR GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLREGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            EG+DIPE   V +L   +   +      IQ +GR  R
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLR 544


>gi|296923414|emb|CAZ27718.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Oncorhynchus mykiss]
          Length = 677

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+ + IR+ RLG  ++L+  ++  EGLDIPEC LV      + G L ++ +  Q  GRA
Sbjct: 420 EQKDTIRNFRLGSLNLLISTSVAEEGLDIPECNLVV-----RYGLLTNEIAQQQASGRA 473


>gi|291458171|ref|ZP_06597561.1| transcription-repair coupling factor [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419254|gb|EFE92973.1| transcription-repair coupling factor [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 1125

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 5/188 (2%)

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIV 295
           Y P  D    +  +    I R R  A   L E    I+V+++  +   I   ES+   ++
Sbjct: 74  YYPAKDLLFYQADTQGTLITRQRVEALSHLTEDESGILVTTIDALMDKIWDRESFQGAVL 133

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
           +L  G   E   L   L    Y+R       G + + G  ++I+P   E+   R+  +G+
Sbjct: 134 RLAPGQIHELSALSKKLTSLGYQRLPAVEAMGEYSLRGGILDIYPFTAEN-PIRLEFWGD 192

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE---LEK 412
           +I+ I  F  L+ + +  ++  +I   +     R    + + Y+ E  ++ L E   L +
Sbjct: 193 EIDNIRSFDLLSQRSVEKLDEAEICPAAERGCGRKGDASLLDYLPEHARIFLDEPARLRE 252

Query: 413 EGRLLEAQ 420
            GR++EA+
Sbjct: 253 RGRMVEAE 260



 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV + H ++   +  EI+     G+ DVLV   ++  GLDIP    + I DAD+ G    
Sbjct: 812 RVAFAHGKMNEGQLEEIMLRFINGEIDVLVSTTIIETGLDIPNANTLIINDADRMGL--- 868

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
            + L Q  GR  R+  +    YA  + +  +L  +E+ +R
Sbjct: 869 -SQLYQIRGRVGRSSRTA---YAFFLYRRGKLLSEESEKR 904


>gi|224009464|ref|XP_002293690.1| eukaryotic translation initiation factor 4A [Thalassiosira
           pseudonana CCMP1335]
 gi|220970362|gb|EED88699.1| eukaryotic translation initiation factor 4A [Thalassiosira
           pseudonana CCMP1335]
          Length = 369

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + L E + ER+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 244 TRRKVDWLQEQMQERDFTVSCMHGDMDQRERDIIMREFRSGSSRVLITTDLLARGIDVQQ 303

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        ++ + I  IGR+ R
Sbjct: 304 VSLVINFDLPT-----NRENYIHRIGRSGR 328


>gi|195128419|ref|XP_002008661.1| GI13618 [Drosophila mojavensis]
 gi|193920270|gb|EDW19137.1| GI13618 [Drosophila mojavensis]
          Length = 595

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +QGL+  +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G   VL+
Sbjct: 369 RQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERTQHQRDNCVRAFREGHIWVLI 428

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+  G+D     LV   D     F  SK S I  IGR  R
Sbjct: 429 CTELMGRGIDFKGVNLVINYD-----FPPSKISYIHRIGRTGR 466


>gi|161506980|ref|YP_001576934.1| putative RNA helicase [Lactobacillus helveticus DPC 4571]
 gi|160347969|gb|ABX26643.1| putative RNA helicase [Lactobacillus helveticus DPC 4571]
          Length = 453

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++LT YL ++ ++V  +H  V   ER   +R +  G+F  +V  +L   GLDI  
Sbjct: 253 TKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQYVVASDLAARGLDIDG 312

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +       R    +I  IGR  RN
Sbjct: 313 VSLVINYE-----IPRDIEFVIHRIGRTGRN 338


>gi|154308886|ref|XP_001553778.1| eukaryotic initiation factor 4A-12 [Botryotinia fuckeliana B05.10]
 gi|160385734|sp|A6S4N4|FAL1_BOTFB RecName: Full=ATP-dependent RNA helicase fal1
 gi|150852597|gb|EDN27789.1| eukaryotic initiation factor 4A-12 [Botryotinia fuckeliana B05.10]
          Length = 399

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D   ++E +       I  IGR+ R
Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPVNRENY-------IHRIGRSGR 357


>gi|113970068|ref|YP_733861.1| transcription-repair coupling factor [Shewanella sp. MR-4]
 gi|113884752|gb|ABI38804.1| transcription-repair coupling factor [Shewanella sp. MR-4]
          Length = 1160

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 60/305 (19%), Positives = 132/305 (43%), Gaps = 36/305 (11%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           ++Q L  + G G+  T+A ++   +   +++  +   A  +  E       +A++  +  
Sbjct: 17  QMQTLSCLAGVGQAVTLASLVRQHKGTTLIVTSDTPTALSIELELNYLLAKSAIKVRLFP 76

Query: 229 YDYYQP-EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
                P +++ P  D   ++  +++ QI +  HS           +V+  V+ +      
Sbjct: 77  DRETLPYDSFSPHQDLISQRLETLS-QITQAEHS-----------VVIVPVTTLMMRLPP 124

Query: 288 ESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           +SY S  +  LK GD  +  ++   L    Y   +     G F + G  ++IFP+ + ++
Sbjct: 125 KSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGV-NM 183

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F +++E I  F P T +    V+ +++     +    PT ++A++  ++  + R
Sbjct: 184 PLRIELFDDEVETIRHFDPETQRSSTPVDAVRLLPAKEF----PTDSSAIEGFRQRYRRR 239

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
              + K     E + + Q ++ +L           IENY          +   TLF+Y+P
Sbjct: 240 FEVIVK-----EPESVYQLVSRNL-------MPAGIENYLPLFF-----DEVATLFDYLP 282

Query: 467 EDSLL 471
           +D+ L
Sbjct: 283 KDTQL 287


>gi|321250245|ref|XP_003191742.1| translation initiation factor [Cryptococcus gattii WM276]
 gi|317458209|gb|ADV19955.1| Translation initiation factor, putative [Cryptococcus gattii WM276]
          Length = 401

 Score = 44.3 bits (103), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L++R   V  MH ++K  ER  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 276 TRRKVDWLTQQLHDRQFTVSAMHGDMKQEEREVIMKEFRSGSSRVLITTDLLARGIDVQQ 335

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  + KE ++
Sbjct: 336 VSLVINYDLPSSKENYI 352


>gi|168010592|ref|XP_001757988.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690865|gb|EDQ77230.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 463

 Score = 44.3 bits (103), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 8/173 (4%)

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           AT+ +   R  +   +RPL     + +R     V   P S + E  +  +   +      
Sbjct: 242 ATMPQAVLRAAAVWGHRPLLVRAQSIIRVEDFRVE--PSSIDSETKESTVSPDLQGAKES 299

Query: 555 VDPPVE----IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           + P +E    + S R  V+ +   I+  A +   +++ +   R  +D+   L  R +   
Sbjct: 300 LPPNLEHFYVVASLRHHVDILRKSIH--ALEARSVIVFLNHSRRLKDVQFKLEARGLTAG 357

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            +H E+  +ER  I+   R GK  VLV   +   GLDIP C LV  L+   +G
Sbjct: 358 ALHGELSKMERSNILNSFRNGKLRVLVTSEVGARGLDIPTCDLVVNLELPTDG 410


>gi|158300606|ref|XP_320481.4| AGAP012045-PA [Anopheles gambiae str. PEST]
 gi|157013241|gb|EAA00456.4| AGAP012045-PA [Anopheles gambiae str. PEST]
          Length = 910

 Score = 44.3 bits (103), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I++ V TK+  +DL + +         +H +    ER  +++D R GK  +LV  ++  
Sbjct: 477 KIIIFVETKKKVDDLLKNIVRDGYGATSIHGDKSQTERDYVLQDFRHGKSTILVATDVAA 536

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     +  S    I  IGR  R
Sbjct: 537 RGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGR 568


>gi|139473559|ref|YP_001128275.1| DEAD box helicase family protein [Streptococcus pyogenes str.
           Manfredo]
 gi|134271806|emb|CAM30039.1| DEAD box helicase family protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 539

 Score = 44.3 bits (103), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332


>gi|95102876|gb|ABF51379.1| eukaryotic translation initiation factor 4A [Bombyx mori]
          Length = 420

 Score = 44.3 bits (103), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++A     + ++   T+R  + LTE ++ R+  V  MH ++   ER  I+R  R
Sbjct: 279 DLYDTLSIA-----QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFR 333

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  +LL  G+D+ +   V
Sbjct: 334 TGSSRVLITTDLLARGIDVQQVSCV 358


>gi|50914526|ref|YP_060498.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
 gi|50903600|gb|AAT87315.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 539

 Score = 44.3 bits (103), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332


>gi|327284970|ref|XP_003227208.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Anolis
           carolinensis]
          Length = 647

 Score = 44.3 bits (103), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 328 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 387

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 388 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 441

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 442 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 468


>gi|331265918|ref|YP_004325548.1| ATP-dependent DNA helicase RecG [Streptococcus oralis Uo5]
 gi|326682590|emb|CBZ00207.1| ATP-dependent DNA helicase RecG [Streptococcus oralis Uo5]
          Length = 671

 Score = 44.3 bits (103), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H ++K+ E+ +I+++ +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQEFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|301067543|ref|YP_003789566.1| superfamily II DNA and RNA helicase [Lactobacillus casei str.
           Zhang]
 gi|300439950|gb|ADK19716.1| Superfamily II DNA and RNA helicase [Lactobacillus casei str.
           Zhang]
          Length = 502

 Score = 44.3 bits (103), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++R  + G+ D LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPDSYVHRIGRTGR 332


>gi|260102894|ref|ZP_05753131.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           helveticus DSM 20075]
 gi|260083296|gb|EEW67416.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           helveticus DSM 20075]
          Length = 453

 Score = 44.3 bits (103), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++LT YL ++ ++V  +H  V   ER   +R +  G+F  +V  +L   GLDI  
Sbjct: 253 TKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQYVVASDLAARGLDIDG 312

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +       R    +I  IGR  RN
Sbjct: 313 VSLVINYE-----IPRDIEFVIHRIGRTGRN 338


>gi|254572872|ref|XP_002493545.1| ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase [Pichia
           pastoris GS115]
 gi|238033344|emb|CAY71366.1| ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase [Pichia
           pastoris GS115]
 gi|328354630|emb|CCA41027.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435]
          Length = 606

 Score = 44.3 bits (103), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 10/109 (9%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++GL ++  V TKRMA+ L+ +L  RN     +H +    ER   +   + G   +LV  
Sbjct: 398 KEGLTLIF-VETKRMADTLSHFLVTRNFPATSIHGDRTQQEREHALHLFKSGAAPILVAT 456

Query: 640 NLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKV 686
            +   GLDIP    V   D  AD + +       +  IGR  R  N  +
Sbjct: 457 AVAARGLDIPNVTHVVNYDLPADIDDY-------VHRIGRTGRAGNVGI 498


>gi|116495993|ref|YP_807727.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334]
 gi|191639473|ref|YP_001988639.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
 gi|227533029|ref|ZP_03963078.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239630391|ref|ZP_04673422.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|116106143|gb|ABJ71285.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334]
 gi|190713775|emb|CAQ67781.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
 gi|227189430|gb|EEI69497.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239526674|gb|EEQ65675.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|327383567|gb|AEA55043.1| DEAD box helicase family protein [Lactobacillus casei LC2W]
 gi|327386759|gb|AEA58233.1| DEAD box helicase family protein [Lactobacillus casei BD-II]
          Length = 502

 Score = 44.3 bits (103), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++R  + G+ D LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPDSYVHRIGRTGR 332


>gi|310778805|ref|YP_003967138.1| type III restriction protein res subunit [Ilyobacter polytropus DSM
           2926]
 gi|309748128|gb|ADO82790.1| type III restriction protein res subunit [Ilyobacter polytropus DSM
           2926]
          Length = 799

 Score = 44.3 bits (103), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 19/113 (16%)

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           ++  E+ +  R EI+   + GK D+L  +++  EG+DIP    V         FLR  TS
Sbjct: 458 FIVGEISSKSRTEILDKFKNGKLDLLFVVDVFNEGVDIPSIDTVM--------FLRPTTS 509

Query: 671 ---LIQTIGRAARNVNSKVIL--------YADTITKSIQLAIDETTRRREKQL 712
               IQ +GR  R   SK  L        Y   I K + L+ D     +E ++
Sbjct: 510 YTIFIQQLGRGLRTSESKTKLRVLDFVGNYKGAILKPLFLSGDYKPSEKESKI 562


>gi|227534630|ref|ZP_03964679.1| helicase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187731|gb|EEI67798.1| helicase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 458

 Score = 44.3 bits (103), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 18/123 (14%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            I   ++ S+   L R E +   + GK  ++  ++L+ EG D+PECG+V +        L
Sbjct: 239 GISAIHVDSKTPALNRDEAMTAFKDGKIRIISNVDLISEGFDVPECGVVIM--------L 290

Query: 666 RSKTSLIQTIGRAARNV----NSKVILYADTITKSIQLAIDETTRR-----REKQLEHNK 716
           R   SL+  I ++ R +    N + I+  D +    +  + +T R      R KQ +H  
Sbjct: 291 RPTASLVLDIQQSMRGMRYRPNKRAII-IDHVANVYRFGLPDTDREWSLEDRPKQEKHRG 349

Query: 717 KHN 719
           K +
Sbjct: 350 KSD 352


>gi|18859541|ref|NP_571132.1| probable ATP-dependent RNA helicase DDX4 [Danio rerio]
 gi|2463519|dbj|BAA22535.1| vas [Danio rerio]
          Length = 716

 Score = 44.3 bits (103), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 5/108 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A    R ++ V TKR A+ +  +L +  I    +H + +  ER + + D RLG   VL
Sbjct: 524 LRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGHCPVL 583

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           V  ++   GLDI +   V   D        S    +  IGR  R  N+
Sbjct: 584 VATSVAARGLDIEQVQHVVNFD-----MPSSIDEYVHRIGRTGRCGNT 626


>gi|330719991|gb|EGG98438.1| ATP-dependent RNA helicase SrmB [gamma proteobacterium IMCC2047]
          Length = 448

 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 21/143 (14%)

Query: 554 LVDP-PVEIRSARTQVEDVYDEINLAAQQGL--RILLTVLTKRM-------------AED 597
           L DP  + + S R Q + +  +I LA   G   R+LL +LT+               A+ 
Sbjct: 203 LTDPQKLLLNSVRDQHQSIRQQIILADDTGHKERLLLALLTREKYEKALIFTNTRAKADV 262

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L E L++  +R   +H E++   R  ++  LR G    LV  ++   GLDI    LV   
Sbjct: 263 LGEMLFKSEVRSGVLHGEMEQEHRNRVVERLRTGHISALVASDVAARGLDIKGIDLVINF 322

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
           D       RS    +  IGR  R
Sbjct: 323 D-----MARSGDDYLHRIGRTGR 340


>gi|328462823|gb|EGF34690.1| putative RNA helicase [Lactobacillus helveticus MTCC 5463]
          Length = 453

 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++LT YL ++ ++V  +H  V   ER   +R +  G+F  +V  +L   GLDI  
Sbjct: 253 TKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQYVVASDLAARGLDIDG 312

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +       R    +I  IGR  RN
Sbjct: 313 VSLVINYE-----IPRDIEFVIHRIGRTGRN 338


>gi|293365912|ref|ZP_06612615.1| DNA helicase RecG [Streptococcus oralis ATCC 35037]
 gi|307702316|ref|ZP_07639274.1| ATP-dependent DNA helicase RecG [Streptococcus oralis ATCC 35037]
 gi|291315590|gb|EFE56040.1| DNA helicase RecG [Streptococcus oralis ATCC 35037]
 gi|307624119|gb|EFO03098.1| ATP-dependent DNA helicase RecG [Streptococcus oralis ATCC 35037]
          Length = 671

 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H ++K+ E+ +I+++ +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQEFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLIANPKTDS 582


>gi|289668008|ref|ZP_06489083.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 717

 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +K  E+ + + D + G+ D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 541 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 599

Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689
                L Q  GR  R    +S V+LY
Sbjct: 600 ---AQLHQLRGRVGRGAAASSCVLLY 622


>gi|251782861|ref|YP_002997164.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391491|dbj|BAH81950.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 539

 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332


>gi|161870155|ref|YP_001599325.1| transcription-repair coupling factor [Neisseria meningitidis
           053442]
 gi|161595708|gb|ABX73368.1| transcription-repair coupling factor [Neisseria meningitidis
           053442]
          Length = 1371

 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 91/212 (42%), Gaps = 17/212 (8%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L + L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            V  I++ +   +    PT + A K  +   +
Sbjct: 200 PVSEIRLLSAHEF----PTDSEAQKIFRSRFR 227



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 1062 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1118

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 1119 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1154


>gi|78049064|ref|YP_365239.1| ATP-dependent DNA helicase RecG [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037494|emb|CAJ25239.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 717

 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +K  E+ + + D + G+ D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 541 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 599

Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689
                L Q  GR  R    +S V+LY
Sbjct: 600 ---AQLHQLRGRVGRGAAASSCVLLY 622


>gi|11990882|dbj|BAB19807.1| vasa [Oreochromis niloticus]
          Length = 645

 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +   L +       +H + +  +R + + D R GK  VLV  ++  
Sbjct: 461 RTMVFVETKRQADFIATILCQEKFPTTSIHGDREQWQREQALGDFRSGKCSVLVATSVGA 520

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDIP+   V   D        +    +  IGR  R  N+
Sbjct: 521 RGLDIPDVQFVVNFD-----LPNNIDEYVHRIGRTGRCGNT 556


>gi|332139566|ref|YP_004425304.1| ATP-dependent DNA helicase RecG [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549588|gb|AEA96306.1| ATP-dependent DNA helicase RecG [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 690

 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 8/112 (7%)

Query: 589 VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           VL  + AED    L     +++V  +H  +K  E+ +++ D + GK D+LV   ++  G+
Sbjct: 495 VLECQAAEDAAVTLRTALPDLQVGLVHGRLKPAEKAQVMADFKDGKLDLLVATTVIEVGV 554

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSK-VILYADTITKS 696
           D+P   ++ I + ++ G       L Q  GR  R  V S+ V++Y   ++K+
Sbjct: 555 DVPNASIMIIENPERLGL----AQLHQLRGRVGRGAVESQCVLMYQSPLSKT 602


>gi|331701287|ref|YP_004398246.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128630|gb|AEB73183.1| DEAD/DEAH box helicase domain protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 453

 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 9/159 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+   T++  E+LTEYL  + ++V  +H  +K  ER +I++ ++  +F  +V  +L   
Sbjct: 246 VLIFANTRKRVEELTEYLKGQGLKVAMIHGGLKPRERKQIMKRVKNLEFQFVVATDLAAR 305

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKSIQLAID 702
           G+DI     V   D   E         I  +GR  RN    + + LY+    K ++   D
Sbjct: 306 GIDIEGVSDVINDDIPTEDL----EFFIHRVGRTGRNGMSGTSITLYSPDEEKEVEELED 361

Query: 703 ETTRRREKQLEHNK---KHNINPQSVKEKIMEVIDPILL 738
                + K L++ +    ++ N +    K  + +DP ++
Sbjct: 362 MGIHFKPKALKNGEIVDSYDRNRRKTHRKKHDKLDPTMI 400


>gi|326911972|ref|XP_003202329.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
           [Meleagris gallopavo]
          Length = 645

 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 322 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 381

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 382 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 435

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 436 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 462


>gi|318056099|gb|ADV36250.1| Vasa [Gadus morhua]
          Length = 644

 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L   N+    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 462 RTMVFVETKRQADFIAAFLCRENVATTSIHGDREQREREQALGDFRSGKCPVLVATSVAA 521

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDI +   V   D        +    +  IGR  R  N+
Sbjct: 522 RGLDIKDVQHVVNFD-----LPNNIDDYVHRIGRTGRCGNT 557


>gi|307709631|ref|ZP_07646083.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK564]
 gi|307619529|gb|EFN98653.1| ATP-dependent DNA helicase RecG [Streptococcus mitis SK564]
          Length = 671

 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H ++K+ E+ +I+++ +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQEFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MLIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|148613856|ref|NP_001091974.1| probable ATP-dependent RNA helicase DDX17 isoform 3 [Homo sapiens]
          Length = 731

 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 413 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 472

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 473 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 526

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 527 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 553


>gi|94990733|ref|YP_598833.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
 gi|94544241|gb|ABF34289.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
          Length = 539

 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332


>gi|62088770|dbj|BAD92832.1| DEAD box polypeptide 17 isoform p82 variant [Homo sapiens]
          Length = 737

 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 415 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 474

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 475 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 528

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 529 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 555


>gi|38201710|ref|NP_006377.2| probable ATP-dependent RNA helicase DDX17 isoform 1 [Homo sapiens]
 gi|110611789|gb|AAH00595.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
          Length = 729

 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 413 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 472

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 473 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 526

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 527 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 553


>gi|15675334|ref|NP_269508.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|19746376|ref|NP_607512.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232]
 gi|71903810|ref|YP_280613.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71910967|ref|YP_282517.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94988830|ref|YP_596931.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94994657|ref|YP_602755.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
 gi|13622515|gb|AAK34229.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|19748574|gb|AAL98011.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS8232]
 gi|71802905|gb|AAX72258.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71853749|gb|AAZ51772.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94542338|gb|ABF32387.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94548165|gb|ABF38211.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
          Length = 539

 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332


>gi|21910615|ref|NP_664883.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28895696|ref|NP_802046.1| ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
 gi|21904817|gb|AAM79686.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28810945|dbj|BAC63879.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
          Length = 539

 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332


>gi|332969227|gb|EGK08257.1| DNA/RNA helicase [Desmospora sp. 8437]
          Length = 788

 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+   + R A+ L++Y  ++  +   +H+  K   RIE +R LR G+ + +  ++L  
Sbjct: 428 RTLVFCSSVRQAQFLSDYFNQQGNKTVALHAGTKN--RIEAVRALREGRIEAIFTVDLFN 485

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           EG+DIP    +  +   +     S +  IQ +GR  R    K
Sbjct: 486 EGVDIPPVDTLLFVRPTE-----SVSVFIQQLGRGLRLAEGK 522


>gi|332251086|ref|XP_003274677.1| PREDICTED: eukaryotic initiation factor 4A-I isoform 1 [Nomascus
           leucogenys]
          Length = 410

 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 285 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 344

Query: 651 CGLV 654
             LV
Sbjct: 345 VSLV 348


>gi|291403975|ref|XP_002718260.1| PREDICTED: eukaryotic translation initiation factor 4A-like
           [Oryctolagus cuniculus]
          Length = 319

 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R++ V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 194 TRREVDWLTEKMHARDVTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 253

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        ++ + I  IG   R
Sbjct: 254 VSLVINYDLPT-----NRENYIHRIGHGGR 278


>gi|190575687|ref|YP_001973532.1| ATP-dependent DNA helicase RecG [Stenotrophomonas maltophilia
           K279a]
 gi|190013609|emb|CAQ47244.1| putative ATP-dependent DNA helicase [Stenotrophomonas maltophilia
           K279a]
          Length = 703

 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 16/138 (11%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDL----TEYLYER------NIRVRYMHSEVKTL 619
           ++ + I LA Q+G ++         +E+L     +  YE        +RV  +H  +K  
Sbjct: 481 ELIERIALACQEGRQVYWVCTLIEESEELDATPAQATYESLQALLPGVRVGLVHGRLKAA 540

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++  +   + G  D+LV   ++  G+D+P   L+ I +A++ G       L Q  GR  
Sbjct: 541 EKLATMVAFKAGDIDLLVATTVIEVGVDVPNASLMVIENAERLGL----AQLHQLRGRVG 596

Query: 680 RN--VNSKVILYADTITK 695
           R   V+  V+LY   +++
Sbjct: 597 RGSAVSRCVLLYQAPLSQ 614


>gi|257051055|sp|A0MQH0|DICER_CRIGR RecName: Full=Endoribonuclease Dicer
 gi|116831677|gb|ABK28790.1| DICER [Cricetulus griseus]
          Length = 1917

 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RSKQMEAEFRKQE--EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GRA   +++ V+L ADT
Sbjct: 543 YRSYVQSKGRARAPISNYVML-ADT 566


>gi|169843536|ref|XP_001828497.1| ATP-dependent RNA helicase DBP3 [Coprinopsis cinerea okayama7#130]
 gi|116510435|gb|EAU93330.1| ATP-dependent RNA helicase DBP3 [Coprinopsis cinerea okayama7#130]
          Length = 671

 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 37/71 (52%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RIL+  L K+ A  + E L  +   V  +H ++    R+E + + + GK  +LV  ++  
Sbjct: 507 RILVFALYKKEASRVEEMLKRQGYTVGALHGDMSQSARMEALDNFKTGKTQLLVATDVAA 566

Query: 644 EGLDIPECGLV 654
            GLDIP  G V
Sbjct: 567 RGLDIPNVGAV 577


>gi|58259399|ref|XP_567112.1| translation initiation factor [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134107479|ref|XP_777624.1| hypothetical protein CNBA7450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687330|sp|Q5KN60|IF4A_CRYNE RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|50260318|gb|EAL22977.1| hypothetical protein CNBA7450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223249|gb|AAW41293.1| translation initiation factor, putative [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 401

 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L++R   V  MH ++K  ER  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 276 TRRKVDWLTQQLHDRQFTVSAMHGDMKQEEREVIMKEFRSGSSRVLITTDLLARGIDVQQ 335

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  + KE ++
Sbjct: 336 VSLVINYDLPSSKENYI 352


>gi|294340821|emb|CAZ89216.1| Cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Thiomonas sp. 3As]
          Length = 666

 Score = 44.3 bits (103), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 11/161 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK+  E+L E L  R      ++ +V    R  +++ L+ G+ D+LV  ++   
Sbjct: 249 MIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATDVAAR 308

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R+ ++  IL+     + +  AI+
Sbjct: 309 GLDVERISHVVNYDIPTDTESYVHR----IGRTGRAGRSGDA--ILFVTPRERHLLRAIE 362

Query: 703 ETTRRREKQLEHNKKHNINPQSVK---EKIMEVIDPILLED 740
             TR+   Q++      +N   +    E+I E  +   LED
Sbjct: 363 RATRQPITQMQLPSTEAVNDSRISRFMERITEAREQEGLED 403


>gi|195169451|ref|XP_002025535.1| GL15249 [Drosophila persimilis]
 gi|194109014|gb|EDW31057.1| GL15249 [Drosophila persimilis]
          Length = 688

 Score = 44.3 bits (103), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           N +A  G +I++ V TK   ED+ + +         +H +    ER  +++D R GK ++
Sbjct: 234 NNSANNGSKIIIFVETKIKVEDILQIIRTEGYIATSIHGDKTQNERDSVLKDFRNGKSNI 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           L+  ++   GLD+ +   V   D     +  S  + +  IGR  R
Sbjct: 294 LIATDVASRGLDVEDLQYVINYD-----YPNSSENYVHRIGRTGR 333


>gi|218530998|ref|YP_002421814.1| helicase [Methylobacterium chloromethanicum CM4]
 gi|218523301|gb|ACK83886.1| helicase domain protein [Methylobacterium chloromethanicum CM4]
          Length = 545

 Score = 44.3 bits (103), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 11/117 (9%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A  + + +    I    + +E    ER  ++RD R GK   LV + +L  G ++PE  L+
Sbjct: 258 AASVRDAIRAEGISCETVTAETGKRERDRMVRDFRAGKIRCLVSVGVLSTGFNVPEVDLI 317

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYADTITKSIQLAIDETTRR 707
           A+L   +   L      +Q +GRA R    K    V+ YA  +   +   +D  T R
Sbjct: 318 ALLRPTQSAGL-----YVQQVGRALRRAPGKSDAIVLDYAGLV--RMHGPVDAVTAR 367


>gi|153805930|ref|ZP_01958598.1| hypothetical protein BACCAC_00170 [Bacteroides caccae ATCC 43185]
 gi|149130607|gb|EDM21813.1| hypothetical protein BACCAC_00170 [Bacteroides caccae ATCC 43185]
          Length = 818

 Score = 44.3 bits (103), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  
Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671

Query: 676 GRAAR-NVNSKVILYADTITKSI 697
           GRA R N   +VIL   +I   I
Sbjct: 672 GRAGRKNKRGRVILQTKSIDHPI 694


>gi|325144576|gb|EGC66875.1| transcription-repair coupling factor [Neisseria meningitidis
           M01-240013]
 gi|325205943|gb|ADZ01396.1| transcription-repair coupling factor [Neisseria meningitidis
           M04-240196]
          Length = 1296

 Score = 44.3 bits (103), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 17/208 (8%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ +   
Sbjct: 37  VVLTLDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ--- 92

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            ++  A        D + V   + +  +  V   +     LK G +++   L S LV   
Sbjct: 93  -IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDAG 144

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  
Sbjct: 145 YNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVSE 203

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELK 404
           I++     +    PT + A K  +   +
Sbjct: 204 IRLLPAHEF----PTDSEAQKIFRSRFR 227



 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 987  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1043

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 1044 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1079


>gi|296923416|emb|CAZ27720.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Oncorhynchus mykiss]
          Length = 623

 Score = 44.3 bits (103), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+ + IR+ RLG  ++L+  ++  EGLDIPEC LV      + G L ++ +  Q  GRA
Sbjct: 420 EQKDTIRNFRLGSLNLLISTSVAEEGLDIPECNLVV-----RYGLLTNEIAQQQASGRA 473


>gi|254561985|ref|YP_003069080.1| helicase domain-containing protein, DEAD/DEAH motif
           [Methylobacterium extorquens DM4]
 gi|254269263|emb|CAX25229.1| putative helicase domain protein, DEAD/DEAH motif [Methylobacterium
           extorquens DM4]
          Length = 545

 Score = 44.3 bits (103), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 11/117 (9%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A  + + +    I    + +E    ER  ++RD R GK   LV + +L  G ++PE  L+
Sbjct: 258 AASVRDAIRAEGISCETVTAETGKRERDRMVRDFRAGKIRCLVSVGVLSTGFNVPEVDLI 317

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYADTITKSIQLAIDETTRR 707
           A+L   +   L      +Q +GRA R    K    V+ YA  +   +   +D  T R
Sbjct: 318 ALLRPTQSAGL-----YVQQVGRALRRAPGKSDAIVLDYAGLV--RMHGPVDAVTAR 367


>gi|227894658|ref|ZP_04012463.1| ATP-dependent RNA helicase [Lactobacillus ultunensis DSM 16047]
 gi|227863553|gb|EEJ70974.1| ATP-dependent RNA helicase [Lactobacillus ultunensis DSM 16047]
          Length = 453

 Score = 44.3 bits (103), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++LT YL ++ ++V  +H  V   ER   +R +  G+F  +V  +L   GLDI  
Sbjct: 253 TKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQYVVASDLAARGLDIDG 312

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +       R    +I  IGR  RN
Sbjct: 313 VSLVINYE-----IPRDIEFVIHRIGRTGRN 338


>gi|221502205|gb|EEE27943.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 1057

 Score = 44.3 bits (103), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 12/151 (7%)

Query: 530  ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
            A PG+      +  +V QI++    V+ P++  + R  +E+     N  A      ++ V
Sbjct: 878  AVPGAMNT-AAKNSMVTQIVK---HVEEPLKAAALRADLEEFLSANNSQA------IVFV 927

Query: 590  LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
             +KR        +    I+   +       ER ++ R+ R G+F VLV  ++   GLD P
Sbjct: 928  RSKRAIHPTAHTIRLAGIQTEVLTGNRTQPERQQVFRNFRDGRFPVLVATSVAARGLDFP 987

Query: 650  ECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              GLV  +D  +E  +      I   GRA R
Sbjct: 988  NVGLVINVDMPQE--MEHYVHRIGRTGRAGR 1016


>gi|149186080|ref|ZP_01864394.1| primosome assembly protein PriA [Erythrobacter sp. SD-21]
 gi|148830111|gb|EDL48548.1| primosome assembly protein PriA [Erythrobacter sp. SD-21]
          Length = 725

 Score = 44.3 bits (103), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            +R+A+++ E L E  + V    +        E I  +  G+ DV+VG  L+ +G   PE
Sbjct: 490 VERIADEVAERLPEARVFVATSDTLNSPGRAAEFIASVDAGEIDVIVGTQLVTKGFHFPE 549

Query: 651 CGLVAILDAD---KEGFLRSK----TSLIQTIGRAARNVNSKVIL 688
             LV ++DAD   + G LR+       + Q  GRA R      +L
Sbjct: 550 LTLVGVVDADLGLEGGDLRAGERTYQQVAQVAGRAGRGAKPGEVL 594


>gi|21909542|ref|NP_663810.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes MGAS315]
 gi|21903722|gb|AAM78613.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes MGAS315]
          Length = 1139

 Score = 44.3 bits (103), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 94/206 (45%), Gaps = 12/206 (5%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           +G++GS K   +A      Q+  +V+   +    +L S+  +      V  F  + D   
Sbjct: 1   MGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFADDVA 58

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
              ++  +   ++K  S  E +  +R+  ++ +L     + +S +  +     V + SQ 
Sbjct: 59  AAEFIFAS---MDKALSRIETLQFLRNPKSQGVL----IVSLSGLRTLLPNPDVFTKSQ- 110

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            +QL +G+  +   L   L+   Y++    I  G F   GD ++I+    +++ +R+  F
Sbjct: 111 -IQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRLEFF 168

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKI 379
           G+DI+ I +F+P T +    +E + I
Sbjct: 169 GDDIDSIRQFHPETQKSFEQLEGVFI 194


>gi|16117825|dbj|BAB69820.1| putative ATP-dependent RNA helicase [Streptococcus sobrinus]
          Length = 522

 Score = 44.3 bits (103), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ +IRD +    D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R   S K + +           I+  T++R 
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEMGYLSIIENLTKKRM 362

Query: 710 KQLE 713
           K L+
Sbjct: 363 KGLK 366


>gi|332674307|gb|AEE71124.1| DNA helicase RecG [Helicobacter pylori 83]
          Length = 621

 Score = 44.3 bits (103), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177
           N KI  P       N+S+ +  F     +  + DQ  AI ++   + S    + L++G  
Sbjct: 209 NAKIACP-------NNSERLKAFITSLPFKLTNDQQNAIKEIQSDLTSPIACKRLIIGDV 261

Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           G GKT   +A ++ A     ++MAP  ILA QLY+E   F P
Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|325917666|ref|ZP_08179860.1| ATP-dependent DNA helicase RecG [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536130|gb|EGD07932.1| ATP-dependent DNA helicase RecG [Xanthomonas vesicatoria ATCC
           35937]
          Length = 714

 Score = 44.3 bits (103), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +K  E+ + + D + G+ D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 538 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 596

Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689
                L Q  GR  R    +S V+LY
Sbjct: 597 ---AQLHQLRGRVGRGAAASSCVLLY 619


>gi|297833736|ref|XP_002884750.1| hypothetical protein ARALYDRAFT_478294 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330590|gb|EFH61009.1| hypothetical protein ARALYDRAFT_478294 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 539

 Score = 44.3 bits (103), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L + L   NIR   +HS++   ER   +   R G+  VL+  +++  
Sbjct: 381 VLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIAR 440

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G+  +++ D   F  S ++ I  IGR+ R
Sbjct: 441 GMDFK--GINCVINYD---FPDSASAYIHRIGRSGR 471


>gi|256083681|ref|XP_002578069.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238663419|emb|CAZ34307.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 944

 Score = 44.3 bits (103), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 9/97 (9%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L ++L + N  V  +H +    ER   ++  R G+  +L+   +   G
Sbjct: 419 LVFVETKRGADVLAKFLCQLNFPVTSIHGDRPQTEREHALQSFRSGRTPILIATAVAARG 478

Query: 646 LDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
           LDIP    V   D  +D E +       +  IGR  R
Sbjct: 479 LDIPNVKHVINFDLPSDIEEY-------VHRIGRTGR 508


>gi|209559644|ref|YP_002286116.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
 gi|209540845|gb|ACI61421.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
          Length = 539

 Score = 44.3 bits (103), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332


>gi|297626903|ref|YP_003688666.1| Transcription-repair coupling factor [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922668|emb|CBL57245.1| Transcription-repair coupling factor [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 1232

 Score = 44.3 bits (103), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 14/185 (7%)

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           + F  + ++    RP +V+      A  L  E  +      V Y+ ++ +    E   P 
Sbjct: 39  RAFITSGLVRRAGRPLLVVTSTFREAESLVDELSSLLGDEEVAYYPAW-ETLPHERLSPN 97

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM-IVQLKI 299
           +DT       +  +++ +R  A +  L     +V    S +     V   + + +V+L+ 
Sbjct: 98  SDT-------VGHRLEVLRRIAGKDDLPAPSVVVAPIRSVLQP--QVRGLADLPVVKLRT 148

Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIE 358
            +  +   L + LV   Y R D+   RG F V G  ++IF P++   V  RV  FG+ IE
Sbjct: 149 AEDYDPSRLEADLVAAAYSRVDLVERRGEFAVRGGIVDIFAPTYSHPV--RVDFFGDTIE 206

Query: 359 EISEF 363
           ++  F
Sbjct: 207 DLRFF 211


>gi|126701125|ref|YP_001090022.1| transcription-repair coupling factor [Clostridium difficile 630]
 gi|255102711|ref|ZP_05331688.1| transcription-repair coupling factor [Clostridium difficile
           QCD-63q42]
 gi|255308532|ref|ZP_05352703.1| transcription-repair coupling factor [Clostridium difficile ATCC
           43255]
 gi|115252562|emb|CAJ70405.1| Transcription-repair coupling factor (TRCF ATP-dependent helicase
           mfd) [Clostridium difficile]
          Length = 1128

 Score = 44.3 bits (103), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 21/178 (11%)

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           K+GDS++ ++L   LV   Y+R       G F + G  I++F     +   R+ +F ++I
Sbjct: 143 KVGDSLDLEKLTEKLVSLGYERVSKIEGFGQFSIRGGIIDVFSLEYTN-PIRMELFDDEI 201

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           + I  F   + + I  ++   I  +  ++ P  T +  +K  KE  K        EG   
Sbjct: 202 DSIRTFDVYSQKSIDKLQQFSITPSREFIYPEKTTDALVKLKKETTKNT-----DEGTF- 255

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                 Q I Y    + +    + +ENY  Y+      E   ++F Y+ +D+++F+++
Sbjct: 256 ------QNIDY----ISSKTYFEGVENYIDYIY----PEENKSIFTYLADDAIVFIND 299


>gi|115434786|ref|NP_001042151.1| Os01g0172200 [Oryza sativa Japonica Group]
 gi|55296347|dbj|BAD68263.1| putative p68 RNA helicase [Oryza sativa Japonica Group]
 gi|113531682|dbj|BAF04065.1| Os01g0172200 [Oryza sativa Japonica Group]
 gi|215713416|dbj|BAG94553.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 759

 Score = 44.3 bits (103), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D+I  + + G +I++   TKRM + L   L  R      +H +    ER  ++ + R G+
Sbjct: 467 DQILRSQEPGSKIIIFCSTKRMCDQLARNL-ARQYGASAIHGDKSQAERDSVLSEFRSGR 525

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +LV  ++   GLDI +  +V   D     F       +  IGR  R
Sbjct: 526 CPILVATDVAARGLDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGR 568


>gi|112983736|ref|NP_001037376.1| eukaryotic translation initiation factor 4A [Bombyx mori]
 gi|73695588|gb|AAZ80489.1| translation initiation factor 4A [Bombyx mori]
          Length = 420

 Score = 44.3 bits (103), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++A     + ++   T+R  + LTE ++ R+  V  MH ++   ER  I+R  R
Sbjct: 279 DLYDTLSIA-----QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFR 333

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  +LL  G+D+ +   V
Sbjct: 334 TGSSRVLITTDLLARGIDVQQVSCV 358


>gi|14211584|dbj|BAB56110.1| vasa short form [Oreochromis niloticus]
          Length = 621

 Score = 44.3 bits (103), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +   L +       +H + +  +R + + D R GK  VLV  ++  
Sbjct: 437 RTMVFVETKRQADFIATILCQEKFPTTSIHGDREQWQREQALGDFRSGKCSVLVATSVGA 496

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDIP+   V   D        +    +  IGR  R  N+
Sbjct: 497 RGLDIPDVQFVVNFD-----LPNNIDEYVHRIGRTGRCGNT 532


>gi|322384200|ref|ZP_08057910.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321151092|gb|EFX44409.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 486

 Score = 44.3 bits (103), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L +R      +H ++   +R  ++R  R G  DVLV  ++   GLD+  
Sbjct: 230 TKRRVDELSEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDV-- 287

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  +++ D     +   S +  IGR  R
Sbjct: 288 SGVSHVINFD---LPQDPESYVHRIGRTGR 314


>gi|312138933|ref|YP_004006269.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|311888272|emb|CBH47584.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
          Length = 610

 Score = 44.3 bits (103), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 8/145 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  EDL E L  R      ++ ++   +R   I  L+ G  D+LV  ++   
Sbjct: 257 MIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDVAAR 316

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  ++  +L+     + +  +I+
Sbjct: 317 GLDVDRISHVVNYDIPHDTESYVHR----IGRTGRAGRTGDA--LLFVAPRERHLLKSIE 370

Query: 703 ETTRRREKQLEHNKKHNINPQSVKE 727
            TTR+   +++     ++N Q V +
Sbjct: 371 RTTRQPLTEIQLPTVEDVNAQRVSK 395


>gi|253743154|gb|EES99653.1| ATP-dependent RNA helicase-like protein [Giardia intestinalis ATCC
           50581]
          Length = 657

 Score = 44.3 bits (103), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           K  A+ +  Y  +   RV  +H ++   ER   ++  + G+ ++L+G ++ + GLDIP  
Sbjct: 479 KSEADRIFRYFDDMRYRVAVIHGDMTQKERENNLKYFKAGRTNILIGTDVAQRGLDIPNV 538

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            LV  L+ D  G +   T  I   GRA R
Sbjct: 539 RLV--LNYDLPGNVDDYTHRIGRTGRAGR 565


>gi|237832369|ref|XP_002365482.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211963146|gb|EEA98341.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
          Length = 1053

 Score = 44.3 bits (103), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 12/151 (7%)

Query: 530  ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
            A PG+      +  +V QI++    V+ P++  + R  +E+     N  A      ++ V
Sbjct: 874  AVPGAMNT-AAKNSMVTQIVK---HVEEPLKAAALRADLEEFLSANNSQA------IVFV 923

Query: 590  LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
             +KR        +    I+   +       ER ++ R+ R G+F VLV  ++   GLD P
Sbjct: 924  RSKRAIHPTAHTIRLAGIQTEVLTGNRTQPERQQVFRNFRDGRFPVLVATSVAARGLDFP 983

Query: 650  ECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              GLV  +D  +E  +      I   GRA R
Sbjct: 984  NVGLVINVDMPQE--MEHYVHRIGRTGRAGR 1012


>gi|212534924|ref|XP_002147618.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|210070017|gb|EEA24107.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
          Length = 286

 Score = 44.3 bits (103), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R
Sbjct: 144 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFR 198

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 199 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 244


>gi|118082784|ref|XP_416260.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
           [Gallus gallus]
          Length = 655

 Score = 44.3 bits (103), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 332 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 391

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 392 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 445

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 446 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 472


>gi|85103782|ref|XP_961600.1| eukaryotic initiation factor 4A-12 [Neurospora crassa OR74A]
 gi|74625334|sp|Q9P735|FAL1_NEUCR RecName: Full=ATP-dependent RNA helicase fal-1
 gi|16415977|emb|CAB88547.2| probable translation initiation factor eIF-4A [Neurospora crassa]
 gi|28923147|gb|EAA32364.1| eukaryotic initiation factor 4A-12 [Neurospora crassa OR74A]
          Length = 400

 Score = 44.3 bits (103), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R
Sbjct: 258 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 313 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 358


>gi|310800687|gb|EFQ35580.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 401

 Score = 44.3 bits (103), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R
Sbjct: 259 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 313

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 314 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 359


>gi|148686840|gb|EDL18787.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Mus musculus]
          Length = 1916

 Score = 44.3 bits (103), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RSKQMEAEFRKQE--EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GRA   +++ V+L ADT
Sbjct: 543 YRSYVQSKGRARAPISNYVML-ADT 566


>gi|109478606|ref|XP_001068155.1| PREDICTED: dicer 1, ribonuclease type III [Rattus norvegicus]
 gi|109479876|ref|XP_001069041.1| PREDICTED: dicer 1, ribonuclease type III [Rattus norvegicus]
 gi|149025439|gb|EDL81806.1| rCG20888 [Rattus norvegicus]
          Length = 1918

 Score = 44.3 bits (103), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RSKQMEAEFRKQE--EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GRA   +++ V+L ADT
Sbjct: 543 YRSYVQSKGRARAPISNYVML-ADT 566


>gi|253771018|gb|ACT35657.1| vasa-like protein [Haliotis asinina]
          Length = 763

 Score = 44.3 bits (103), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+ V  KR A+ L  YL +       +H +    ER E +RD + G   +L+  ++  
Sbjct: 560 KTLVFVEQKRNADFLASYLSQSGFPTTSIHGDRLQREREEALRDFKRGTAPILIATSVAA 619

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDIPE   V   D        S    +  IGR  R  N
Sbjct: 620 RGLDIPEVKHVVNYD-----LPSSIDEYVHRIGRTGRCGN 654


>gi|218187595|gb|EEC70022.1| hypothetical protein OsI_00586 [Oryza sativa Indica Group]
          Length = 754

 Score = 44.3 bits (103), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D+I  + + G +I++   TKRM + L   L  R      +H +    ER  ++ + R G+
Sbjct: 463 DQILRSQEPGSKIIIFCSTKRMCDQLARNL-ARQYGASAIHGDKSQAERDSVLSEFRSGR 521

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +LV  ++   GLDI +  +V   D     F       +  IGR  R
Sbjct: 522 CPILVATDVAARGLDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGR 564


>gi|148686841|gb|EDL18788.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Mus musculus]
          Length = 1908

 Score = 44.3 bits (103), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 482 RSKQMEAEFRKQE--EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTE----- 534

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GRA   +++ V+L ADT
Sbjct: 535 YRSYVQSKGRARAPISNYVML-ADT 558


>gi|117168271|ref|NP_683750.2| endoribonuclease Dicer [Mus musculus]
 gi|225000568|gb|AAI72621.1| Dicer1, Dcr-1 homolog (Drosophila) [synthetic construct]
          Length = 1906

 Score = 44.3 bits (103), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 480 RSKQMEAEFRKQE--EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTE----- 532

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GRA   +++ V+L ADT
Sbjct: 533 YRSYVQSKGRARAPISNYVML-ADT 556


>gi|260945385|ref|XP_002616990.1| hypothetical protein CLUG_02434 [Clavispora lusitaniae ATCC 42720]
 gi|238848844|gb|EEQ38308.1| hypothetical protein CLUG_02434 [Clavispora lusitaniae ATCC 42720]
          Length = 397

 Score = 44.3 bits (103), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK     L + L + N  V  MH ++K  ER  I+ D R
Sbjct: 257 DLYDSLTIT-----QAVIFCNTKSKVNWLADQLRKANFAVSSMHGDMKQEERDSIMNDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D   DKE +       +  IGR+ R
Sbjct: 312 TGNSRVLISTDVWARGIDVQQVSLVINYDLPLDKENY-------VHRIGRSGR 357


>gi|224024964|ref|ZP_03643330.1| hypothetical protein BACCOPRO_01695 [Bacteroides coprophilus DSM
           18228]
 gi|224018200|gb|EEF76198.1| hypothetical protein BACCOPRO_01695 [Bacteroides coprophilus DSM
           18228]
          Length = 423

 Score = 44.3 bits (103), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 19/155 (12%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           QQ  R+++   +K   +++T+ L    + V  MHS++   +R  I+ + R G+ ++LV  
Sbjct: 242 QQPERVIIFASSKIKVKEVTKALKRLKLNVGEMHSDLDQSQREAIMHEFRNGRINMLVAT 301

Query: 640 NLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +++  G+DI +  LV   D   D E +       +  IGR AR  N    +         
Sbjct: 302 DIVARGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTARANNDGCAI--------- 345

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
              + ET + + KQ+E+  +  I    V E++ E 
Sbjct: 346 -TFVSETEQNKFKQIENFLEKEIYKIPVPEELGEA 379


>gi|221481739|gb|EEE20115.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
          Length = 1053

 Score = 44.3 bits (103), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 12/151 (7%)

Query: 530  ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
            A PG+      +  +V QI++    V+ P++  + R  +E+     N  A      ++ V
Sbjct: 874  AVPGAMNT-AAKNSMVTQIVK---HVEEPLKAAALRADLEEFLSANNSQA------IVFV 923

Query: 590  LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
             +KR        +    I+   +       ER ++ R+ R G+F VLV  ++   GLD P
Sbjct: 924  RSKRAIHPTAHTIRLAGIQTEVLTGNRTQPERQQVFRNFRDGRFPVLVATSVAARGLDFP 983

Query: 650  ECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              GLV  +D  +E  +      I   GRA R
Sbjct: 984  NVGLVINVDMPQE--MEHYVHRIGRTGRAGR 1012


>gi|159029421|emb|CAO90797.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 832

 Score = 44.3 bits (103), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 14/109 (12%)

Query: 591 TKRMAEDLT-EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+R+ ++L+ E+   R +R     +  K   R E+++    G+FDVLVG  +L +GLDI 
Sbjct: 596 TQRVTQELSKEFPDLRCLRFDSDTTRNKNAPR-ELLKLFTDGEFDVLVGTQMLTKGLDIE 654

Query: 650 ECGLVAILDADKEGFL---------RSKTSLIQTIGRAARN-VNSKVIL 688
              LV ++ AD  G L         R+  +L Q  GRA R     KVI+
Sbjct: 655 RVTLVGVMAAD--GLLYHSDYRASERAFQTLTQVAGRAGRGETEGKVII 701


>gi|118783118|ref|XP_312776.3| AGAP003089-PA [Anopheles gambiae str. PEST]
 gi|116129059|gb|EAA08469.4| AGAP003089-PA [Anopheles gambiae str. PEST]
          Length = 400

 Score = 44.3 bits (103), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LTE + E N  V  MH ++   ER EI+++ R
Sbjct: 259 DLYDTLTIT-----QAVIFCNTRRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 313

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 314 SGQSRVLITTDVWARGIDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 359


>gi|108761990|ref|YP_629050.1| DEAD/DEAH family helicase [Myxococcus xanthus DK 1622]
 gi|108465870|gb|ABF91055.1| helicase, DEAD/DEAH family [Myxococcus xanthus DK 1622]
          Length = 1280

 Score = 44.3 bits (103), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 7/107 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+   +   A  + ++L  + IR   +H+   + +R + +R L  G  D +  ++L  
Sbjct: 570 RTLVFCCSISHAHFVQQWLGGQGIRAVAVHAGAGSADRAQSLRQLANGTLDAICAVDLFN 629

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VIL 688
           EG+D+P    V +L   +     S    +Q +GR  R    K  VIL
Sbjct: 630 EGVDVPSIDRVVMLRPTE-----SPVVFLQQLGRGLRKAKGKERVIL 671


>gi|329962241|ref|ZP_08300247.1| primosomal protein [Bacteroides fluxus YIT 12057]
 gi|328530349|gb|EGF57226.1| primosomal protein [Bacteroides fluxus YIT 12057]
          Length = 823

 Score = 44.3 bits (103), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  G
Sbjct: 618 IIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRAYERAYQLMAQVAG 677

Query: 677 RAAR-NVNSKVILYADTITKSI 697
           RA R N   +V+L   +I   I
Sbjct: 678 RAGRKNKRGRVVLQTKSIDHPI 699


>gi|257051057|sp|Q8R418|DICER_MOUSE RecName: Full=Endoribonuclease Dicer; AltName:
           Full=Double-strand-specific ribonuclease mDCR-1
          Length = 1916

 Score = 44.3 bits (103), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RSKQMEAEFRKQE--EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GRA   +++ V+L ADT
Sbjct: 543 YRSYVQSKGRARAPISNYVML-ADT 566


>gi|157150698|ref|YP_001449735.1| ATP-dependent DNA helicase RecG [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075492|gb|ABV10175.1| ATP-dependent DNA helicase RecG [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 671

 Score = 44.3 bits (103), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+L  Y +  + RV  +H ++K+ E+  I++  +  + D+LV   ++  G+++P   +
Sbjct: 484 LEEELQAY-FGGDARVSLLHGKMKSDEKEAIMQAFKNKEVDILVSTTVIEVGVNVPNATI 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T+S
Sbjct: 543 MVIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTES 582


>gi|149053067|gb|EDM04884.1| eukaryotic translation initiation factor 4A1, isoform CRA_a [Rattus
           norvegicus]
          Length = 393

 Score = 44.3 bits (103), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|194363858|ref|YP_002026468.1| DEAD/DEAH box helicase domain-containing protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194346662|gb|ACF49785.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 829

 Score = 44.3 bits (103), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 16/135 (11%)

Query: 554 LVDPPVEIR-SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-------R 605
           +++P + +R SAR+Q   +     +A + GL+ L+   T+ M E LT+YL +       +
Sbjct: 284 VINPDLGLRASARSQSNRI---ARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRK 340

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
             R+R         ER E  R +R G  D +V  + L  G+DI    +V +      G+ 
Sbjct: 341 PPRIRAYRGGYLPTERRETERAMRAGTIDGIVSTSALELGVDIGSLDVVIL-----NGYP 395

Query: 666 RSKTSLIQTIGRAAR 680
            S  +  Q  GRA R
Sbjct: 396 GSVAATWQRFGRAGR 410


>gi|332297440|ref|YP_004439362.1| ATP-dependent DNA helicase RecG [Treponema brennaborense DSM 12168]
 gi|332180543|gb|AEE16231.1| ATP-dependent DNA helicase RecG [Treponema brennaborense DSM 12168]
          Length = 744

 Score = 44.3 bits (103), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 595 AEDLTEYLYER---NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           AED+  +L +      R+  +HS ++  E+  I+ D + G+ D+LV  +++  G+D+P  
Sbjct: 564 AEDMYRFLSQEVYPQFRIALVHSRIEEAEQHRILDDFKNGRTDILVATSVVEVGVDVPNA 623

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + +  AD+ G      +L Q  GR  R+
Sbjct: 624 TCMVVEHADRFGM----AALHQLRGRVGRS 649


>gi|320590134|gb|EFX02577.1| dead box helicase [Grosmannia clavigera kw1407]
          Length = 1329

 Score = 44.3 bits (103), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S +K  ++IE I   + G F+VLV  ++  EGLDI +  L+   DA       S   ++Q
Sbjct: 592 SGMKQKQQIEAIEKFKAGAFNVLVATSIGEEGLDIGQVDLIICYDASS-----SPIRMLQ 646

Query: 674 TIGRAARNVNSKVIL 688
            +GR  R     VIL
Sbjct: 647 RMGRTGRKRAGHVIL 661


>gi|320095784|ref|ZP_08027429.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319977291|gb|EFW08989.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 575

 Score = 44.3 bits (103), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 14/129 (10%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TKR A  L E L  R   V  +H ++    R + +R  R GK DVLV  ++  
Sbjct: 331 RAVIFCRTKRTAARLGEDLAARGFAVGSLHGDLGQGAREQALRAFRNGKVDVLVATDVAA 390

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL----YADT-----IT 694
            G+D+ +   V      ++     +   I  IGR  R  NS   +    + DT     I+
Sbjct: 391 RGIDVDDVTHVVNYQCPED-----EKIYIHRIGRTGRAGNSGTAVTFVDWDDTPRWSLIS 445

Query: 695 KSIQLAIDE 703
           K++ L + E
Sbjct: 446 KALGLGVPE 454


>gi|317125440|ref|YP_004099552.1| ATP-dependent DNA helicase RecG [Intrasporangium calvum DSM 43043]
 gi|315589528|gb|ADU48825.1| ATP-dependent DNA helicase RecG [Intrasporangium calvum DSM 43043]
          Length = 755

 Score = 44.3 bits (103), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R   +H  ++T E+   +R    G+ DVLV   ++  G+D+P   ++ ++DAD+ G  
Sbjct: 570 GVRTAVLHGRLETDEKEATMRAFAAGEIDVLVATTVIEVGVDVPNASVMVVVDADRFGI- 628

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADT 692
              + L Q  GR  R     + L   T
Sbjct: 629 ---SQLHQLRGRVGRGSVPGLCLLVTT 652


>gi|302036528|ref|YP_003796850.1| putative ATP-dependent DNA helicase Lhr [Candidatus Nitrospira
           defluvii]
 gi|300604592|emb|CBK40924.1| putative ATP-dependent DNA helicase Lhr [Candidatus Nitrospira
           defluvii]
          Length = 1459

 Score = 44.3 bits (103), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 18/141 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +    +     L+ V T+R+AE ++ YL E   R+R++  EV       + R +R
Sbjct: 278 DIYDRVAALVEAHRSTLVFVNTRRLAERVSHYLEE---RLRHLGDEVVAAHHGSLSRTIR 334

Query: 630 L--------GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           L        G   V+V    L  G+D+    LV  +     G  RS  + +Q IGRA   
Sbjct: 335 LSAEDRLKTGAVRVVVATASLELGIDVGTVDLVCQI-----GSPRSIATGLQRIGRAGHW 389

Query: 682 VNS--KVILYADTITKSIQLA 700
           V++  K  L+A T  + I+ A
Sbjct: 390 VHAIPKGRLFATTRDELIECA 410


>gi|218921790|emb|CAW30776.1| IF protein [Haemonchus contortus]
          Length = 180

 Score = 44.3 bits (103), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 54/98 (55%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +N+      + ++   T+R  E LTE + ++   V  +H +++  +R  I+R+ R
Sbjct: 84  DLYDAVNVT-----QAVIFCNTRRKVEQLTEQMTKKQFTVSSLHGDMEQQDRDVIMREFR 138

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 139 SGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 176


>gi|325676644|ref|ZP_08156320.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
 gi|325552534|gb|EGD22220.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
          Length = 453

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 8/145 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  EDL E L  R      ++ ++   +R   I  L+ G  D+LV  ++   
Sbjct: 257 MIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDVAAR 316

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  ++  +L+     + +  +I+
Sbjct: 317 GLDVDRISHVVNYDIPHDTESYVHR----IGRTGRAGRTGDA--LLFVAPRERHLLKSIE 370

Query: 703 ETTRRREKQLEHNKKHNINPQSVKE 727
            TTR+   +++     ++N Q V +
Sbjct: 371 RTTRQPLTEIQLPTVEDVNAQRVSK 395


>gi|320590131|gb|EFX02574.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 713

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L  +N     +H +    ER   +   R G+  +LV   +   G
Sbjct: 481 LIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARG 540

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 541 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGL 576


>gi|312864570|ref|ZP_07724801.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei
           F0415]
 gi|311099697|gb|EFQ57910.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei
           F0415]
          Length = 521

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ +IRD +    D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R   S K + +           I+  T++R 
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEMGYLSIIENLTKKRM 362

Query: 710 KQLE 713
           K L+
Sbjct: 363 KGLK 366


>gi|307546355|ref|YP_003898834.1| primosomal protein N' [Halomonas elongata DSM 2581]
 gi|307218379|emb|CBV43649.1| K04066 primosomal protein N' (replication factor Y) (superfamily II
           helicase) [Halomonas elongata DSM 2581]
          Length = 745

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILA 206
           +G+Q AA+  L +G+ +     LL GVTGSGKT    ++IEA+   QR A+V+ P   L 
Sbjct: 211 NGEQAAAMGALHEGLDAFHPC-LLHGVTGSGKTEVYLQLIEAVVGRQRQALVLVPEIGLT 269

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
            Q    F+  F    V       D+ + +A+
Sbjct: 270 PQTLERFRKRFQVPVVALHSGLTDHERLDAW 300


>gi|293400344|ref|ZP_06644490.1| putative helicase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306744|gb|EFE47987.1| putative helicase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 385

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 13/163 (7%)

Query: 526 IVVSATPGSWELEQC---QGIIVEQIIRPTG--LVDPPVEIRSARTQVEDVYDEINLAAQ 580
           ++++ATP    LE+    +  +VE   RP G  L++P V       Q+  +   +     
Sbjct: 198 LMLTATPDEDMLERVKRQEVCMVELFQRPHGYPLIEPQVYQMPKAAQMVWMLYFLRKQKH 257

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            G++ L+ V T  MA  L  +L    +  R      KT E+ ++I +    ++D L+   
Sbjct: 258 DGIQTLVFVPTIHMANTLYRFL---RLTHRCAVFTSKTKEKEKVIDEFHEKRYDFLITTT 314

Query: 641 LLREGLDIPECGL-VAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +L  G+ I   G+ V IL AD   F   + SLIQ IGR  RN+
Sbjct: 315 ILERGITIR--GIYVMILCADHPIF--QEASLIQMIGRVGRNI 353


>gi|240013954|ref|ZP_04720867.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae DGI18]
 gi|240121523|ref|ZP_04734485.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae PID24-1]
          Length = 1234

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 83/199 (41%), Gaps = 17/199 (8%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ +    ++  A   
Sbjct: 46  ALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ----IKSGAA-- 98

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
                D + V   + +  +  V   +     LK G +++   L + LV   Y      + 
Sbjct: 99  -----DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVA 153

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
            G F V G  +++FP   E   +R+ +F N+I+ I  F   T + I  V  I++     +
Sbjct: 154 AGEFAVRGGIVDLFPMGSE-TPYRIDLFDNEIDSIKTFDTDTQRTISPVSEIRLLPAHEF 212

Query: 386 VTPRPTLNTAMKYIKEELK 404
               PT + A K  +   +
Sbjct: 213 ----PTDSEAQKIFRSRFR 227



 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 923  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 979

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 980  -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1015


>gi|224036359|pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-Eif4a
 gi|224036361|pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-Eif4a
          Length = 414

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 289 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 348

Query: 651 CGLV 654
             LV
Sbjct: 349 VSLV 352


>gi|153814527|ref|ZP_01967195.1| hypothetical protein RUMTOR_00741 [Ruminococcus torques ATCC 27756]
 gi|317500570|ref|ZP_07958791.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|145848021|gb|EDK24939.1| hypothetical protein RUMTOR_00741 [Ruminococcus torques ATCC 27756]
 gi|316898003|gb|EFV20053.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 1115

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V + H ++K  E  +I+ D   G  DVLV   ++  GLDIP    + I DAD+ G     
Sbjct: 806 VAFAHGQMKERELEDIMYDFINGDIDVLVSTTIIETGLDIPNANTMIIQDADRFGL---- 861

Query: 669 TSLIQTIGRAARN 681
           + L Q  GR  R+
Sbjct: 862 SQLYQLRGRVGRS 874



 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 105/245 (42%), Gaps = 33/245 (13%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---- 216
           + G  + +K+ LL G+ GSG  + +            V+  N+  A + Y E+  F    
Sbjct: 30  ISGCVNTQKIHLLSGI-GSGCGYKL------------VVFSNEEKAKKAYEEYLLFGEET 76

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           + + A +    Y D              I+ ++  N +++ +R  A +   E    ++ +
Sbjct: 77  YLYPARDLLFYYAD--------------IKGKTLTNRRMEVLRAIAEKKK-EEPVTVITT 121

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
             + + GI S +   +  + +   D+V+  +L   L    Y+R+      G F V G  I
Sbjct: 122 MDAFLDGIISPDEIQKNRIHITGEDTVDLTKLEQDLTALGYERESQIEAPGQFAVRGGII 181

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++FP   E++  R+ ++G++I+ I  F   + + I N+  I IY  S        L + +
Sbjct: 182 DVFPLA-EEMPVRIELWGDEIDSIRMFDAKSQRSIENISEITIYPASENCFGNNGLVSFL 240

Query: 397 KYIKE 401
           KY  E
Sbjct: 241 KYFPE 245


>gi|20385913|gb|AAM21495.1|AF430845_1 dicer-like protein [Mus musculus]
          Length = 1917

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 491 RSKQMEAEFRKQE--EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTE----- 543

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GRA   +++ V+L ADT
Sbjct: 544 YRSYVQSKGRARAPISNYVML-ADT 567


>gi|21244116|ref|NP_643698.1| ATP-dependent DNA helicase RecG [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21109744|gb|AAM38234.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 717

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +K  E+ + + D + G+ D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 541 GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGL- 599

Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689
                L Q  GR  R    +S V+LY
Sbjct: 600 ---AQLHQLRGRVGRGAAASSCVLLY 622


>gi|271969774|ref|YP_003343970.1| transcription-repair coupling factor [Streptosporangium roseum DSM
           43021]
 gi|270512949|gb|ACZ91227.1| transcription-repair coupling factor [Streptosporangium roseum DSM
           43021]
          Length = 1204

 Score = 44.3 bits (103), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 110/273 (40%), Gaps = 41/273 (15%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A  L +   +    N V  F ++ +    E   PR DT  ++ + +     R+ H     
Sbjct: 97  AEDLAAALTSLLDPNTVAVFPAW-ETLPHERLSPRGDTVGQRLAVLR----RLAHPIEGD 151

Query: 266 LLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +      ++V+ V  +      G+G +       V+L+ GD  +   ++  LV+  Y R 
Sbjct: 152 VAAGPLQVIVAPVRAVLQPIVRGLGDLRP-----VRLRAGDDADLDGIVHRLVENGYNRV 206

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG   V G  +++FP   E+   R+  +G+ +EEI  F      K+ +  ++++ 
Sbjct: 207 DMVEKRGEVAVRGGLLDVFPP-TEEHPLRLEFWGDSVEEIRWF------KVADQRSLEVA 259

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               +  P   L      + E+++ R  EL +         L   +   L+ L      +
Sbjct: 260 EEGLFAAPCREL-----LLTEDVRRRARELAE---------LHPALAEILDQLAEGVPME 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
            +E ++  L G         L +++P  + +FV
Sbjct: 306 GMEAFAPVLAGEM-----DLLIDHLPAQAAVFV 333


>gi|257205736|emb|CAX82519.1| belle [Schistosoma japonicum]
          Length = 939

 Score = 44.3 bits (103), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 9/97 (9%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L ++L + N  V  +H +    ER   ++  R G+  +L+   +   G
Sbjct: 418 LVFVETKRGADILAKFLCQLNFPVASIHGDRPQTEREHALQSFRSGRTPILIATAVAARG 477

Query: 646 LDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
           LDIP    V   D  +D E +       +  IGR  R
Sbjct: 478 LDIPNVKHVINFDLPSDIEEY-------VHRIGRTGR 507


>gi|224537786|ref|ZP_03678325.1| hypothetical protein BACCELL_02669 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520606|gb|EEF89711.1| hypothetical protein BACCELL_02669 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 823

 Score = 44.3 bits (103), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  G
Sbjct: 618 IIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRSYERAFQLMAQVAG 677

Query: 677 RAAR-NVNSKVILYADTITKSI 697
           RA R N   +VIL   +I   I
Sbjct: 678 RAGRKNKRGRVILQTKSIDHPI 699


>gi|212639602|ref|YP_002316122.1| ATP-dependent DNA helicase RecG [Anoxybacillus flavithermus WK1]
 gi|212561082|gb|ACJ34137.1| RecG-like helicase [Anoxybacillus flavithermus WK1]
          Length = 682

 Score = 44.3 bits (103), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LT Y Y+   R+  MH  + + E+ E++R        +LV   ++  G+++P   ++ I 
Sbjct: 494 LTHY-YKGRYRIGLMHGRLSSEEKEEVMRAFSANDIHILVSTTVVEVGVNVPNATVMVIY 552

Query: 658 DADKEGFLRSKTSLIQTIGRAARN-VNSKVILYAD 691
           DAD+ G     + L Q  GR  R    S  IL AD
Sbjct: 553 DADRFGL----SQLHQLRGRVGRGQAQSYCILVAD 583


>gi|170720851|ref|YP_001748539.1| transcription-repair coupling factor [Pseudomonas putida W619]
 gi|169758854|gb|ACA72170.1| transcription-repair coupling factor [Pseudomonas putida W619]
          Length = 1149

 Score = 44.3 bits (103), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 41/208 (19%), Positives = 90/208 (43%), Gaps = 21/208 (10%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   +  R  +++  +   A +L  E + F P   V  F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPGLPVLPFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +       
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELSHG----------ILVVPITTALHRLAPTRFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G +++ +++ S L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDVGQTIDVEQMRSRLEATGYRCVDTVYEHGEFAVRGALIDLFPMG-SKLPYRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKI 379
           +F ++IE +  F P T + I  V++I++
Sbjct: 184 LFDDEIETLRTFDPETQRSIDKVDSIRL 211



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VL+   ++  G+D+P  
Sbjct: 825 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 882

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             + I  ADK G       L Q  GR  R+ +     YA  +T + Q    +  +R E
Sbjct: 883 NTIVIERADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPARQKVSADAEKRLE 933


>gi|167769539|ref|ZP_02441592.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM
           17241]
 gi|167668507|gb|EDS12637.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM
           17241]
          Length = 572

 Score = 44.3 bits (103), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 4/118 (3%)

Query: 573 DEINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           D +NL  Q     R ++   TK M + LTEYL +   R   +H ++K   R ++++  R 
Sbjct: 231 DALNLLLQYHDPKRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRD 290

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GK  +LV  ++   G+D+     V   D  +E         I   GRA R   S  ++
Sbjct: 291 GKTRILVATDVAARGIDVENIEAVFNFDIPQE--FEHYIHRIGRTGRAGRTGMSHTLV 346


>gi|163789886|ref|ZP_02184322.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
 gi|159874826|gb|EDP68894.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
          Length = 527

 Score = 44.3 bits (103), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  R   +H ++   +R+ +++  + GK DVLV  ++   GLDI  
Sbjct: 248 TKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLKAFKTGKLDVLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|71051290|gb|AAH99392.1| Eif4a1 protein [Mus musculus]
          Length = 405

 Score = 44.3 bits (103), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 280 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 339

Query: 651 CGLV 654
             LV
Sbjct: 340 VSLV 343


>gi|74219920|dbj|BAE40541.1| unnamed protein product [Mus musculus]
          Length = 406

 Score = 44.3 bits (103), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|28377407|ref|NP_784299.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|254555590|ref|YP_003062007.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|300769652|ref|ZP_07079536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179612|ref|YP_003923740.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28270239|emb|CAD63140.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|254044517|gb|ACT61310.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|300492805|gb|EFK27989.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308045103|gb|ADN97646.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 528

 Score = 44.3 bits (103), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L++ L  R      +H ++    R +I+R  + GK D+LV  ++   GLD+  
Sbjct: 248 TKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILVATDVAARGLDV-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+  + + D     +   S +  IGR  R  +  V L
Sbjct: 306 SGVTHVYNYD---IPQDPDSYVHRIGRTGRAGHKGVSL 340


>gi|332879243|ref|ZP_08446940.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682663|gb|EGJ55563.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 448

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 9/102 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   +D+   L     +V  MHS+++  ER E++   +  + DVLV  +++ 
Sbjct: 246 RVIIFASSKLKVKDMAIALGRAGFKVGAMHSDLEQQERDEVMYKFKAQQIDVLVATDIVA 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVN 683
            G+DI +  LV   D   D E +       +  IGR AR  N
Sbjct: 306 RGIDIDDIQLVINFDVPHDAEDY-------VHRIGRTARANN 340


>gi|322412399|gb|EFY03307.1| putative late competence protein required for DNA uptake
           [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 441

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 10/171 (5%)

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           +I+ + IR  GL+      +  R  V+ +  +     + G  +L+ +    MAE +TE L
Sbjct: 266 LILPKFIRSFGLLKKIHCQKLPRALVKSISQQ----RKTGCPLLIFLPIIAMAELVTELL 321

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
                  +      ++ +R++ I D R GK  +LV   +L  G+  P    V +L A   
Sbjct: 322 KLAFPEEQIACVSSQSADRVKDIDDFRQGKKGILVTTTILERGVTFPGVD-VFVLMAQHR 380

Query: 663 GFLRSKTSLIQTIGRAARNV---NSKVILYADTITKSIQLAIDETTRRREK 710
           G+  S  SL+Q  GR  R++     KV  + D I+++++ A  E     +K
Sbjct: 381 GY--SSQSLVQIAGRVGRSIERPTGKVYFFHDGISQAMRNARKEIKEMNQK 429


>gi|322516063|ref|ZP_08069000.1| DNA helicase RecG [Streptococcus vestibularis ATCC 49124]
 gi|322125478|gb|EFX96824.1| DNA helicase RecG [Streptococcus vestibularis ATCC 49124]
          Length = 316

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 11/117 (9%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + ++LT++ +  +  V  MH  +K  E+ +I++D +  K  +LV   ++  G+++P   +
Sbjct: 129 LHQELTDF-FGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATV 187

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA----DTITKSIQLAIDETT 705
           + I+DAD+ G     + L Q  GR  R +  S  +L A    DT  K +Q A+ ETT
Sbjct: 188 MVIMDADRFGL----SQLHQLRGRVGRGDKQSYCVLVANPKNDTGKKRMQ-AMCETT 239


>gi|308159971|gb|EFO62485.1| ATP-dependent RNA helicase-like protein [Giardia lamblia P15]
          Length = 655

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           K  A+ +  Y  +   RV  +H ++   ER   ++  + G+ ++L+G ++ + GLDIP  
Sbjct: 479 KSEADRIFRYFDDMRYRVAVIHGDMTQKERENNLKYFKAGRTNILIGTDVAQRGLDIPNV 538

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            LV  L+ D  G +   T  I   GRA R
Sbjct: 539 RLV--LNYDLPGNVDDYTHRIGRTGRAGR 565


>gi|226487070|emb|CAX75400.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
 gi|226487074|emb|CAX75402.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
 gi|226487078|emb|CAX75404.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
          Length = 768

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 5/98 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TKR  + LT  L  R   V  MH   +  +R   +   + G+ ++L+  ++  
Sbjct: 335 RTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLASFKSGRMNILIATDVAS 394

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            GLDI     V   D     F       I  IGR AR+
Sbjct: 395 RGLDIDNIEYVVNFD-----FPNQTEDYIHRIGRTARS 427


>gi|253730160|ref|ZP_04864325.1| helicase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253726098|gb|EES94827.1| helicase [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 953

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  L+ GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQVVIEKLKEGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            EG+DIPE   V +L   +   +      IQ +GR  R  ++K
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549


>gi|163852239|ref|YP_001640282.1| helicase domain-containing protein [Methylobacterium extorquens
           PA1]
 gi|163663844|gb|ABY31211.1| helicase domain protein [Methylobacterium extorquens PA1]
          Length = 545

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 11/117 (9%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A  + + +    I    + +E    ER  ++RD R GK   LV + +L  G ++PE  L+
Sbjct: 258 AASVRDAIRAEGISCETVTAETGKRERDRMVRDFRAGKIRCLVSVGVLSTGFNVPEVDLI 317

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYADTITKSIQLAIDETTRR 707
           A+L   +   L      +Q +GRA R    K    V+ YA  +   +   +D  T R
Sbjct: 318 ALLRPTQSAGL-----YVQQVGRALRRAPGKSDAIVLDYAGLV--RMHGPVDAVTAR 367


>gi|145345795|ref|XP_001417385.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577612|gb|ABO95678.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 480

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 2/103 (1%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L ++LY+       +H +    ER   ++  R GK  +LV  ++   G
Sbjct: 305 LVFVETKRGADQLEDFLYQNGKPATSIHGDRTQQEREAALKSFRAGKTPILVATDVAARG 364

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           LDIP   +  +++ D    +   T  I   GRA +   +  + 
Sbjct: 365 LDIPH--VTHVINFDLPSDIDDYTHRIGRTGRAGKKGRATALF 405


>gi|22830885|dbj|BAC15765.1| double-strand-specific ribonuclease MDCR [Mus musculus]
          Length = 1906

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 480 RSKQMEAEFRKQE--EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTE----- 532

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GRA   +++ V+L ADT
Sbjct: 533 YRSYVQSKGRARAPISNYVML-ADT 556


>gi|326903247|gb|EGE50180.1| LOW QUALITY PROTEIN: hypothetical protein TBPG_01112 [Mycobacterium
           tuberculosis W-148]
          Length = 125

 Score = 44.3 bits (103), Expect = 0.093,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 29/121 (23%)

Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK------GKA- 762
           KQ+ +N+ + I+PQ +++KI +++D +  E   T  + +     + S+ +      G+A 
Sbjct: 2   KQIAYNEANGIDPQPLRKKIADILDQVYREADDTAVVEVGGSGRNASRGRRAQGEPGRAV 61

Query: 763 --------------------HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGL 802
                                +K L  QM  AA +L FE AAR RDEI  LK     +G+
Sbjct: 62  SAGVFEGRDTSAMPRAELADLIKDLTAQMMAAARDLQFELAARFRDEIADLKRE--LRGM 119

Query: 803 D 803
           D
Sbjct: 120 D 120


>gi|301757526|ref|XP_002914626.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DDX17-like [Ailuropoda melanoleuca]
          Length = 775

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 457 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 516

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 517 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 570

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 571 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 597


>gi|302408591|ref|XP_003002130.1| ATP-dependent RNA helicase FAL1 [Verticillium albo-atrum VaMs.102]
 gi|261359051|gb|EEY21479.1| ATP-dependent RNA helicase FAL1 [Verticillium albo-atrum VaMs.102]
          Length = 401

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R
Sbjct: 259 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 313

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 314 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 359


>gi|302910116|ref|XP_003050220.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256731157|gb|EEU44507.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R
Sbjct: 265 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 319

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 320 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 365


>gi|195502701|ref|XP_002098342.1| GE24009 [Drosophila yakuba]
 gi|194184443|gb|EDW98054.1| GE24009 [Drosophila yakuba]
          Length = 2250

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 551 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 605

Query: 683 NSKVILYADTITKSIQLAIDETTR 706
              VIL A T       A+  T R
Sbjct: 606 AYHVILVAPTYKSPPVGAVQLTDR 629


>gi|168187210|ref|ZP_02621845.1| DNA/RNA helicase [Clostridium botulinum C str. Eklund]
 gi|169294890|gb|EDS77023.1| DNA/RNA helicase [Clostridium botulinum C str. Eklund]
          Length = 833

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 13/118 (11%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKF 633
           N    +  R L    +K+ A+ + +Y     ++    Y  SE + ++R E I  L  G+ 
Sbjct: 444 NYKKYKSTRALGFCTSKKHAKFMADYFNNAGVKACAVYSGSESEDIDRKEAISMLAKGEV 503

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLR---SKTSLIQTIGRAARNVNSKVIL 688
            VL  I++  EGLDIP   +V         FLR   S T  +Q +GR  R    K  L
Sbjct: 504 KVLFSIDMFNEGLDIPSIDMVM--------FLRPTESPTIFLQQLGRGLRKYQDKKYL 553


>gi|19072786|gb|AAL84638.1|AF484524_1 endoribonuclease Dicer [Mus musculus x Mus spretus]
          Length = 1539

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 474 RSKQMEAEFRKQE--EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTE----- 526

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GRA   +++ V+L ADT
Sbjct: 527 YRSYVQSKGRARAPISNYVML-ADT 550


>gi|72382000|ref|YP_291355.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str.
           NATL2A]
 gi|72001850|gb|AAZ57652.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str.
           NATL2A]
          Length = 846

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           TE   E N+ +  +H ++K++E+ E+I++    K D+LV   ++  G+D+P   ++ I D
Sbjct: 660 TEIFSEFNVEL--LHGKMKSVEKQEVIQNFINKKSDILVSTTVIEVGVDVPNASVMLIED 717

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           +D+ G       L Q  GR  R  +    L +
Sbjct: 718 SDRFGL----AQLHQLRGRVGRGASKSYCLLS 745


>gi|4503529|ref|NP_001407.1| eukaryotic initiation factor 4A-I isoform 1 [Homo sapiens]
 gi|21450625|ref|NP_659207.1| eukaryotic initiation factor 4A-I isoform 1 [Mus musculus]
 gi|40786436|ref|NP_955404.1| eukaryotic initiation factor 4A-I [Rattus norvegicus]
 gi|77735407|ref|NP_001029400.1| eukaryotic initiation factor 4A-I [Bos taurus]
 gi|154147660|ref|NP_001093666.1| eukaryotic initiation factor 4A-I [Sus scrofa]
 gi|326807000|ref|NP_001192066.1| eukaryotic initiation factor 4A-I [Callithrix jacchus]
 gi|149724255|ref|XP_001504824.1| PREDICTED: eukaryotic translation initiation factor 4A, isoform 1
           [Equus caballus]
 gi|291405131|ref|XP_002718844.1| PREDICTED: eukaryotic translation initiation factor 4A-like
           [Oryctolagus cuniculus]
 gi|301778191|ref|XP_002924476.1| PREDICTED: eukaryotic initiation factor 4A-I-like [Ailuropoda
           melanoleuca]
 gi|46397463|sp|P60842|IF4A1_HUMAN RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|46397464|sp|P60843|IF4A1_MOUSE RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|109892471|sp|Q3SZ54|IF4A1_BOVIN RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|219403|dbj|BAA02897.1| eukaryotic initiation factor 4AI [Homo sapiens]
 gi|2943740|dbj|BAA25075.1| eIF4A [Mus musculus]
 gi|16307020|gb|AAH09585.1| Eukaryotic translation initiation factor 4A, isoform 1 [Homo
           sapiens]
 gi|26346290|dbj|BAC36796.1| unnamed protein product [Mus musculus]
 gi|29612606|gb|AAH49915.1| Eukaryotic translation initiation factor 4A1 [Mus musculus]
 gi|39793992|gb|AAH63812.1| Eukaryotic translation initiation factor 4A1 [Rattus norvegicus]
 gi|49522221|gb|AAH73752.1| Eukaryotic translation initiation factor 4A, isoform 1 [Homo
           sapiens]
 gi|54696622|gb|AAV38683.1| eukaryotic translation initiation factor 4A, isoform 1 [Homo
           sapiens]
 gi|54696624|gb|AAV38684.1| eukaryotic translation initiation factor 4A, isoform 1 [Homo
           sapiens]
 gi|58864806|emb|CAI51943.1| eukaryotic translation initiation factor 4A1 [Mus musculus]
 gi|61357581|gb|AAX41409.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic
           construct]
 gi|61357587|gb|AAX41410.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic
           construct]
 gi|74138684|dbj|BAE27158.1| unnamed protein product [Mus musculus]
 gi|74138757|dbj|BAE27191.1| unnamed protein product [Mus musculus]
 gi|74139346|dbj|BAE40818.1| unnamed protein product [Mus musculus]
 gi|74139356|dbj|BAE40821.1| unnamed protein product [Mus musculus]
 gi|74139407|dbj|BAE40845.1| unnamed protein product [Mus musculus]
 gi|74141945|dbj|BAE41037.1| unnamed protein product [Mus musculus]
 gi|74151432|dbj|BAE38831.1| unnamed protein product [Mus musculus]
 gi|74151508|dbj|BAE38862.1| unnamed protein product [Mus musculus]
 gi|74177669|dbj|BAE38935.1| unnamed protein product [Mus musculus]
 gi|74185163|dbj|BAE39182.1| unnamed protein product [Mus musculus]
 gi|74188940|dbj|BAE39241.1| unnamed protein product [Mus musculus]
 gi|74189138|dbj|BAE39326.1| unnamed protein product [Mus musculus]
 gi|74189153|dbj|BAE39332.1| unnamed protein product [Mus musculus]
 gi|74193609|dbj|BAE22765.1| unnamed protein product [Mus musculus]
 gi|74198159|dbj|BAE35256.1| unnamed protein product [Mus musculus]
 gi|74201277|dbj|BAE26099.1| unnamed protein product [Mus musculus]
 gi|74204464|dbj|BAE39979.1| unnamed protein product [Mus musculus]
 gi|74208421|dbj|BAE26397.1| unnamed protein product [Mus musculus]
 gi|74211475|dbj|BAE26477.1| unnamed protein product [Mus musculus]
 gi|74220076|dbj|BAE40614.1| unnamed protein product [Mus musculus]
 gi|74220399|dbj|BAE31424.1| unnamed protein product [Mus musculus]
 gi|74268155|gb|AAI03131.1| Eukaryotic translation initiation factor 4A, isoform 1 [Bos taurus]
 gi|85792232|gb|ABC84193.1| eukaryotic translation initiation factor 4A isoform 1 [Sus scrofa]
 gi|90076216|dbj|BAE87788.1| unnamed protein product [Macaca fascicularis]
 gi|119610573|gb|EAW90167.1| eukaryotic translation initiation factor 4A, isoform 1, isoform
           CRA_b [Homo sapiens]
 gi|119610574|gb|EAW90168.1| eukaryotic translation initiation factor 4A, isoform 1, isoform
           CRA_b [Homo sapiens]
 gi|123992423|gb|ABM83970.1| eukaryotic translation initiation factor 4A, isoform 1 [synthetic
           construct]
 gi|123999458|gb|ABM87287.1| eukaryotic translation initiation factor 4A, isoform 1 [synthetic
           construct]
 gi|149053069|gb|EDM04886.1| eukaryotic translation initiation factor 4A1, isoform CRA_c [Rattus
           norvegicus]
 gi|168279007|dbj|BAG11383.1| eukaryotic initiation factor 4A-I [synthetic construct]
 gi|189069177|dbj|BAG35515.1| unnamed protein product [Homo sapiens]
 gi|296476703|gb|DAA18818.1| eukaryotic translation initiation factor 4A isoform 1 [Bos taurus]
 gi|227238|prf||1617105B initiation factor 4AI
          Length = 406

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|159110489|ref|XP_001705502.1| ATP-dependent RNA helicase-like protein [Giardia lamblia ATCC
           50803]
 gi|157433587|gb|EDO77828.1| ATP-dependent RNA helicase-like protein [Giardia lamblia ATCC
           50803]
          Length = 656

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           K  A+ +  Y  +   RV  +H ++   ER   ++  + G+ ++L+G ++ + GLDIP  
Sbjct: 479 KSEADRIFRYFDDMRYRVAVIHGDMTQKERENNLKYFKAGRTNILIGTDVAQRGLDIPNV 538

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            LV  L+ D  G +   T  I   GRA R
Sbjct: 539 RLV--LNYDLPGNVDDYTHRIGRTGRAGR 565


>gi|257069043|ref|YP_003155298.1| ATP-dependent DNA helicase RecQ [Brachybacterium faecium DSM 4810]
 gi|256559861|gb|ACU85708.1| ATP-dependent DNA helicase RecQ [Brachybacterium faecium DSM 4810]
          Length = 762

 Score = 44.3 bits (103), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++  LT   AEDL E L     RVR         ER E+ R L+  +   L   + L  G
Sbjct: 271 IIYTLTVSAAEDLAELLDRPGRRVRAYTGRTDAEERAELERALKENEVKALAATSALGMG 330

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            D P+ G V  L A       S  +  Q +GRA R  ++  +L
Sbjct: 331 FDKPDLGFVVHLGAPS-----SPVAYYQQVGRAGRATDTADVL 368


>gi|150024302|ref|YP_001295128.1| transcription-repair coupling factor [Flavobacterium psychrophilum
           JIP02/86]
 gi|149770843|emb|CAL42308.1| Transcription-repair coupling factor [Flavobacterium psychrophilum
           JIP02/86]
          Length = 1117

 Score = 44.3 bits (103), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 93/230 (40%), Gaps = 17/230 (7%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A I  LLK I    K+ +  G+ GS  +F +  +    +   +++   K  AA + ++ +
Sbjct: 14  AKIVNLLKTIKGDNKIHIK-GLVGSSFSFVIEALFAKSENSFLLLCNEKEEAAYILNDLE 72

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CI 273
                  V ++ S Y          R    IE   + N     +R      L  R    I
Sbjct: 73  QLVSDQDVLFYPSSY----------RRPYQIEDTDNANV---LLRSEVLNRLNSRKKPAI 119

Query: 274 VVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +VS    I+  + + +   +  +++ +GD V    +   L + ++KR D     G F V 
Sbjct: 120 IVSYPEAIFEKVVTKKELDKNTLKISVGDLVSIDFINEVLFEYEFKRVDFITEPGEFSVR 179

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           G  +++F S   D  +R+  FGN+++ I  F   T   I     I I  N
Sbjct: 180 GGILDVF-SFSNDNPYRIEFFGNEVDSIRTFDVATQLSIEKKNKIAIIPN 228



 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 16/162 (9%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY--LYER---NIRVRYM 612
           P+E        E + D I+   ++G ++    +  R+ E++ E   + +R   + +V   
Sbjct: 744 PIETHVVGFNEETIRDAISFEIERGGQVFF--INNRI-ENIKEVAGMIQRLVPDAKVGIG 800

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H ++   +  E++     G+FDVLV   ++  GLD+P    + I +A+  G     + L 
Sbjct: 801 HGQMDGKKLEELMLAFMEGEFDVLVATTIIESGLDVPNANTIFINNANNFGL----SDLH 856

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
           Q  GR  R+ N K   Y      S+   + E  R+R + LE 
Sbjct: 857 QMRGRVGRS-NKKAFCYFICPPYSV---MTEDARKRIQALEQ 894


>gi|114669834|ref|XP_001147587.1| PREDICTED: DEAD box polypeptide 42 protein isoform 4 [Pan
           troglodytes]
          Length = 775

 Score = 44.3 bits (103), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 338 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 397

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 398 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 449


>gi|398103|gb|AAA26886.1| Exp9 [Streptococcus pneumoniae]
          Length = 78

 Score = 44.3 bits (103), Expect = 0.094,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI
Sbjct: 7   TKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI 64


>gi|197099748|ref|NP_001126779.1| eukaryotic initiation factor 4A-I [Pongo abelii]
 gi|73621051|sp|Q5R5F5|IF4A1_PONAB RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|55732624|emb|CAH93011.1| hypothetical protein [Pongo abelii]
          Length = 406

 Score = 44.3 bits (103), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|77413593|ref|ZP_00789780.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 515]
 gi|77160359|gb|EAO71483.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 515]
          Length = 528

 Score = 44.3 bits (103), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ +IRD +    D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|68474769|ref|XP_718592.1| hypothetical protein CaO19.10024 [Candida albicans SC5314]
 gi|68474936|ref|XP_718509.1| hypothetical protein CaO19.2488 [Candida albicans SC5314]
 gi|74627388|sp|Q5A9Z6|FAL1_CANAL RecName: Full=ATP-dependent RNA helicase FAL1
 gi|46440277|gb|EAK99585.1| hypothetical protein CaO19.2488 [Candida albicans SC5314]
 gi|46440366|gb|EAK99673.1| hypothetical protein CaO19.10024 [Candida albicans SC5314]
          Length = 399

 Score = 44.3 bits (103), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD  NL   Q +   +   TK     L + + ++N  V  MH ++K  ER  I+ D R
Sbjct: 258 DLYD--NLTITQAV---IFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D   DKE +       I  IGR+ R
Sbjct: 313 RGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENY-------IHRIGRSGR 358


>gi|323320775|gb|ADX36410.1| eukaryotic initiation factor-like protein [Brachymyrmex
           patagonicus]
          Length = 256

 Score = 44.3 bits (103), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++      + ++   T+R  + LTE +++R+  V  MH +++  ER  I+R  R
Sbjct: 115 DLYDTLSIT-----QAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFR 169

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 170 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 207


>gi|323143379|ref|ZP_08078066.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066]
 gi|322416845|gb|EFY07492.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066]
          Length = 683

 Score = 44.3 bits (103), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 11/155 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK  AED+   L  R +    +H ++   +R +II  L+ G  D+++  ++   
Sbjct: 295 VLVFVRTKTDAEDVANKLMARGMACAALHGDIPQRQREKIIERLKNGSLDIIIATDVAAR 354

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R    + IL+     +     I+
Sbjct: 355 GLDVDRITHVFNYDIPYDAESYVHR----IGRTGRAGR--QGEAILFVSPRERRALRQIE 408

Query: 703 ETTRRREKQLEHNKKHNINP---QSVKEKIMEVID 734
             TR+R + +      ++N    ++ + +I+E I+
Sbjct: 409 RVTRQRIEPMRMPTVADVNKRRLENFRNQILETIE 443


>gi|319399660|gb|EFV87914.1| transcription-repair coupling factor [Staphylococcus epidermidis
           FRI909]
          Length = 1166

 Score = 44.3 bits (103), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 25/186 (13%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           +K+G  ++    L+ LV   Y+R+ +    G F + G  I+I+P  L     R+ +F  +
Sbjct: 138 IKVGQDIDVDTFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGTPVRIELFDTE 195

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           ++ I +F   T +   N+  ++I   S Y+      +  +++++ ELK          + 
Sbjct: 196 VDSIRDFDVETQRSNDNINQVEITTASDYIIT----DEVIQHLQNELK----------KA 241

Query: 417 LEAQR--LEQRITYDLEMLETTGSCQSIEN--YSRYLTGRNPG---EPPPTLFEYIPEDS 469
            E  R  +E+ +  DL+  ET  S +  E+  +   L  R      E P TL +Y  +++
Sbjct: 242 YEYTRPKIEKSVRNDLK--ETYESFKLFESTFFDHQLLRRLVAFMYEKPSTLIDYFQKNA 299

Query: 470 LLFVDE 475
           ++ VDE
Sbjct: 300 IVVVDE 305


>gi|312375424|gb|EFR22803.1| hypothetical protein AND_14200 [Anopheles darlingi]
          Length = 971

 Score = 44.3 bits (103), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I++ V TK+  +DL + +         +H +    ER  +++D R GK  +LV  ++  
Sbjct: 519 KIIIFVETKKKVDDLLKNIVRDGYGATSIHGDKSQSERDYVLQDFRHGKSTILVATDVAA 578

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     +  S    I  IGR  R
Sbjct: 579 RGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGR 610


>gi|260664026|ref|ZP_05864879.1| primosomal protein N [Lactobacillus jensenii SJ-7A-US]
 gi|260561912|gb|EEX27881.1| primosomal protein N [Lactobacillus jensenii SJ-7A-US]
          Length = 797

 Score = 44.3 bits (103), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 15/106 (14%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINL 641
            L   T+++ E+LTE L       R +  +V T  R     EI+     G  D+L+G  +
Sbjct: 553 FLGTGTQKVEEELTELL----PGARVLRMDVDTTRRKGSYKEILDKFGAGNADILLGTQM 608

Query: 642 LREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           + +GLD P   LV +++AD   +L       ++   L Q  GRA R
Sbjct: 609 IAKGLDFPNVTLVGVINADTALYLPDYNASEKTFELLTQVAGRAGR 654


>gi|158257374|dbj|BAF84660.1| unnamed protein product [Homo sapiens]
          Length = 406

 Score = 44.3 bits (103), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|5679690|emb|CAB51742.1| RNA helicase-1 [Plasmodium falciparum]
          Length = 386

 Score = 44.3 bits (103), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 11/120 (9%)

Query: 567 QVEDVYDEINLA------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +VE V +E  L+       + G  +L+    K+  +D+ EYL  + +    +H  +   E
Sbjct: 226 EVEYVKEEFKLSYLLEVLQKTGPPVLIFCENKKDVDDVHEYLLLKGVNAVAIHGNLGQSE 285

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E I   R GK D+LVG ++  +GLD P    V   D  K+       + +  IGR  R
Sbjct: 286 RQEAINLFREGKKDILVGTDVASKGLDFPSIEHVINYDMPKD-----IENYVHRIGRTGR 340


>gi|54696620|gb|AAV38682.1| eukaryotic translation initiation factor 4A, isoform 1 [synthetic
           construct]
 gi|61367705|gb|AAX43035.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic
           construct]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|327349134|gb|EGE77991.1| dicer [Ajellomyces dermatitidis ATCC 18188]
          Length = 1482

 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DLR GK ++LV  ++L EG+D+  C LV   DA     + +  S IQ  GR AR   S
Sbjct: 475 IDDLRSGKKNLLVATSVLEEGIDVSACHLVVCFDA-----ISNLRSFIQRRGR-ARKERS 528

Query: 685 KVILYADTITKS 696
           K +++ +   KS
Sbjct: 529 KFVIFLNGDDKS 540


>gi|310794364|gb|EFQ29825.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 695

 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 5/99 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L  +N     +H +    ER   +   R G+  +LV   +   G
Sbjct: 455 LIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEFFRNGRCPILVATAVAARG 514

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           LDIP    V   D   +         +  IGR  R  N+
Sbjct: 515 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNT 548


>gi|288926741|ref|ZP_06420652.1| ATP-dependent RNA helicase DeaD [Prevotella buccae D17]
 gi|288336471|gb|EFC74846.1| ATP-dependent RNA helicase DeaD [Prevotella buccae D17]
          Length = 579

 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   + +   L  ++I    MHS+++  ER +I+   + G+ DVLV  +++ 
Sbjct: 247 RVIIFCGSKMKVKQVNAALQRKHINCGEMHSDLEQAERDDIMFKFKSGQLDVLVATDIVA 306

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            G+DI +  +V   D   D E +       +  IGR AR
Sbjct: 307 RGIDIDDIAMVINYDVPHDAEDY-------VHRIGRTAR 338


>gi|199598808|ref|ZP_03212220.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|229551599|ref|ZP_04440324.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus
           LMS2-1]
 gi|258509533|ref|YP_003172284.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|258540734|ref|YP_003175233.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|199590313|gb|EDY98407.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|229315064|gb|EEN81037.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus
           LMS2-1]
 gi|257149460|emb|CAR88433.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|257152410|emb|CAR91382.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|259650800|dbj|BAI42962.1| RNA helicase [Lactobacillus rhamnosus GG]
          Length = 502

 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++R  + G+ D LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
            G+  + + D     +   S +  IGR  R  +  V
Sbjct: 306 SGVTHVYNYD---IPQDPDSYVHRIGRTGRAGHKGV 338


>gi|148667738|gb|EDL00155.1| mCG1035528 [Mus musculus]
          Length = 406

 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|148727325|ref|NP_001092045.1| eukaryotic initiation factor 4A-I [Pan troglodytes]
 gi|158514251|sp|A5A6N4|IF4A1_PANTR RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|146741502|dbj|BAF62407.1| eukaryotic translation initiation factor 4A, isoform 1 [Pan
           troglodytes verus]
          Length = 406

 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|108798904|ref|YP_639101.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. MCS]
 gi|119868019|ref|YP_937971.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. KMS]
 gi|108769323|gb|ABG08045.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. MCS]
 gi|119694108|gb|ABL91181.1| ATP-dependent DNA helicase RecG [Mycobacterium sp. KMS]
          Length = 741

 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  MH  +   E+  ++   R G+ DVLV   ++  G+D+P   ++ ++DAD+ G  
Sbjct: 560 GLRLGLMHGRLSGDEKDAVMTAFRAGEIDVLVCTTVIEVGVDVPNATVMVVMDADRFGI- 618

Query: 666 RSKTSLIQTIGRAARNVNSKVILYA 690
              + L Q  GR  R     + L A
Sbjct: 619 ---SQLHQLRGRIGRGSYPSLCLLA 640


>gi|290985850|ref|XP_002675638.1| predicted protein [Naegleria gruberi]
 gi|284089235|gb|EFC42894.1| predicted protein [Naegleria gruberi]
          Length = 920

 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 21/123 (17%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           II D R G F+VLV   +  EGLDI E  L+ + D+       S T LIQ +GR  R   
Sbjct: 559 IIHDFRDGIFNVLVSTPIGEEGLDIGEIDLIVLYDS-----ASSPTRLIQRVGRTGRKRK 613

Query: 684 SKVI----------LYADTITKSIQL--AIDETTRRRE-KQLEHNKK---HNINPQSVKE 727
             ++           Y ++I +   L  A+ E     + K  E N +   + I PQ V+E
Sbjct: 614 GNIVALLSEGRERHAYEESIKQKKVLIDALKEIPYHNDVKFFEKNMRMVPNQIIPQVVRE 673

Query: 728 KIM 730
           KI+
Sbjct: 674 KII 676


>gi|256843386|ref|ZP_05548874.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus 125-2-CHN]
 gi|256614806|gb|EEU20007.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus 125-2-CHN]
          Length = 678

 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 15/142 (10%)

Query: 566 TQVEDVYDEINLAAQQGLRI-----LLT---VLTKRMAEDLTEYLYER--NIRVRYMHSE 615
           +Q+++VY ++     QG +I     L+T    L  + AE+L E L     N +V  +H +
Sbjct: 449 SQMKEVYRQMQEQLNQGFQIYAVTPLITESETLDLKNAEELHEKLSHDFPNHKVVLLHGQ 508

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +   ++ EI+     G+ D+LV  +++  G+D+    ++ I +AD+ G     + L Q  
Sbjct: 509 MPGAQKDEIMTAFAAGEIDILVTTSVIEVGVDVANANMMVIYNADRFGL----SQLHQLR 564

Query: 676 GRAARN-VNSKVILYADTITKS 696
           GR  R    S  +  AD  T S
Sbjct: 565 GRIGRGQTQSYCVFLADPKTDS 586



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 560 EIRSART--QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T   V  ++  I    Q  L +   +L  +  + + E L    +RV  +    K
Sbjct: 284 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 343

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           TLER EI R+L  G  +V++G + L+++ +   + GLV I
Sbjct: 344 TLERREIYRELTDGTINVVIGTHALIQDSVIFKKLGLVII 383


>gi|238878985|gb|EEQ42623.1| eukaryotic initiation factor 4A-12 [Candida albicans WO-1]
          Length = 399

 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD  NL   Q +   +   TK     L + + ++N  V  MH ++K  ER  I+ D R
Sbjct: 258 DLYD--NLTITQAV---IFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D   DKE +       I  IGR+ R
Sbjct: 313 RGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENY-------IHRIGRSGR 358


>gi|257052562|ref|YP_003130395.1| Hef nuclease [Halorhabdus utahensis DSM 12940]
 gi|256691325|gb|ACV11662.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
          Length = 833

 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 25/154 (16%)

Query: 554 LVDPPVEIRSARTQVEDVYD------------EINLAAQQGLRILLTVLTKRMAEDLTEY 601
           L+  P ++R AR + ED  D               L    G R+++   ++  AE LT++
Sbjct: 333 LISAP-KVREARRKAEDFEDLHPKFRRTRMQIAETLGIHDGERVIVFTESRDTAETLTDF 391

Query: 602 LYERNIRVRYMHSE-------VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           L E     +++          +   E+ E +   R G+F+VLV  ++  EGLD+PE  LV
Sbjct: 392 LGEHFSVEKFVGQSDTDGSDGMTQTEQQETLEAFRAGEFEVLVSTSVAEEGLDVPEVDLV 451

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              +      + +    IQ  GR  R     V++
Sbjct: 452 LFYEP-----VPTAIRSIQRKGRTGRQTEGAVVV 480


>gi|188528292|ref|YP_001910979.1| ATP-dependent DNA helicase RecG [Helicobacter pylori Shi470]
 gi|188144532|gb|ACD48949.1| DNA recombinase (recG) [Helicobacter pylori Shi470]
          Length = 623

 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 9/102 (8%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177
           N KI  P       N+S+    F     +  + DQ  AI ++   + S    + L++G  
Sbjct: 209 NAKIACP-------NNSERFKAFIASLPFQLTNDQQNAIKEIQSDLASPIACKRLIIGDV 261

Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           G GKT   +A ++ A     ++MAP  ILA QLY+E   F P
Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|163793172|ref|ZP_02187148.1| Transcription-repair coupling factor [alpha proteobacterium BAL199]
 gi|159181818|gb|EDP66330.1| Transcription-repair coupling factor [alpha proteobacterium BAL199]
          Length = 1162

 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + LK+GD +  + LL+   +  Y R D     G F V G  I++FP+ +++ A R+  FG
Sbjct: 133 LTLKVGDDMPLESLLAMFTRSGYGRTDTVREPGEFAVRGGIIDVFPTGMDEPA-RLDFFG 191

Query: 355 NDIEEISEF 363
           +++E +  F
Sbjct: 192 DELEAVRTF 200


>gi|39940710|ref|XP_359892.1| eukaryotic initiation factor 4A-12 [Magnaporthe oryzae 70-15]
 gi|152032454|sp|A4QU31|FAL1_MAGO7 RecName: Full=ATP-dependent RNA helicase FAL1
 gi|145010887|gb|EDJ95543.1| eukaryotic initiation factor 4A-12 [Magnaporthe oryzae 70-15]
          Length = 401

 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R
Sbjct: 259 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 313

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 314 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 359


>gi|73966209|ref|XP_851852.1| PREDICTED: similar to eukaryotic translation initiation factor 4A,
           isoform 1 isoform 2 [Canis familiaris]
          Length = 406

 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|330878592|gb|EGH12741.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 1150

 Score = 43.9 bits (102), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 120/307 (39%), Gaps = 55/307 (17%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +   +   
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELEHG----------VLVVPITTALHRLAPTKFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++   + + L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDVGQKLDVNAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPFRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P T + I  VE++++                       L  R   L+
Sbjct: 184 LFDDEIETLRTFDPDTQRSIDKVESVRL-----------------------LPAREFPLQ 220

Query: 412 KEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           KE       R  +R   D       + L +  +   IE Y          E   TLF+Y+
Sbjct: 221 KEEVTRFKARFRERFDVDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYL 275

Query: 466 PEDSLLF 472
           P+DS +F
Sbjct: 276 PQDSQVF 282



 Score = 37.4 bits (85), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 30/103 (29%)

Query: 605 RNIRVRYMHSEVKTLERI-----EIIRDLRLG---------------------KFDVLVG 638
           R  +V Y+H++VKT+E+      E++ + R+G                     +F+VL+ 
Sbjct: 811 RGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRERDLEQVMSDFYHKRFNVLIA 870

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             ++  G+D+P    + I  ADK G       L Q  GR  R+
Sbjct: 871 STIIETGIDVPSANTIIIERADKFGL----AQLHQLRGRVGRS 909


>gi|313681446|ref|YP_004059184.1| ATP-dependent DNA helicase recg [Sulfuricurvum kujiense DSM 16994]
 gi|313154306|gb|ADR32984.1| ATP-dependent DNA helicase RecG [Sulfuricurvum kujiense DSM 16994]
          Length = 595

 Score = 43.9 bits (102), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 152 DQPAAIAQL---LKGIHSREKVQLLLGVTGSGKTFT-MAKVIEAMQRPAIVMAPNKILAA 207
           DQ  AIA +   L+G ++  +  +++G  GSGKT   +A VI      +I+MAP  ILAA
Sbjct: 225 DQQNAIADIGSDLRGENAARR--MIVGDVGSGKTMVILASVILMHPYRSILMAPTTILAA 282

Query: 208 QLYSEFKNFFP 218
           QLY E + + P
Sbjct: 283 QLYEEAQKYLP 293


>gi|296453842|ref|YP_003660985.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183273|gb|ADH00155.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 1194

 Score = 43.9 bits (102), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 38/221 (17%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P G +PA  A + +G+  +    ++L V  SG+    A+      R      PN I  AQ
Sbjct: 51  PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L  E     PH               E   PR DT   + +       R++H +    + 
Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDPMF 143

Query: 269 RNDCIVVSSV-----SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
               I+V  +       + G+G VE      +   +G+ +   E    L++  Y R D+ 
Sbjct: 144 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVDLV 198

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + RG F V G  +++FP        R+  FG++I+ I EF+
Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238


>gi|239610437|gb|EEQ87424.1| dicer-like protein 2 [Ajellomyces dermatitidis ER-3]
          Length = 1509

 Score = 43.9 bits (102), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DLR GK ++LV  ++L EG+D+  C LV   DA     + +  S IQ  GR AR   S
Sbjct: 501 IDDLRSGKKNLLVATSVLEEGIDVSACHLVVCFDA-----ISNLRSFIQRRGR-ARKERS 554

Query: 685 KVILYADTITKS 696
           K +++ +   KS
Sbjct: 555 KFVIFLNGDDKS 566


>gi|85373850|ref|YP_457912.1| transcription-repair coupling factor [Erythrobacter litoralis
           HTCC2594]
 gi|84786933|gb|ABC63115.1| transcription-repair coupling factor [Erythrobacter litoralis
           HTCC2594]
          Length = 1162

 Score = 43.9 bits (102), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 8/93 (8%)

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
           +  +G  +  + L + L +Q Y R D  +  G + + G  ++IFPS L D   R+  FG+
Sbjct: 129 EFAVGTEIGMESLSALLRRQGYTRTDTVVDSGEYAIRGSIVDIFPSGL-DQGLRLDFFGD 187

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           ++E +  F P T     + E IK    SH + P
Sbjct: 188 ELESLRLFDPSTQM---STEVIK----SHLLLP 213


>gi|34556787|ref|NP_906602.1| ATP-dependent DNA helicase RecG [Wolinella succinogenes DSM 1740]
 gi|34482502|emb|CAE09502.1| ATP-DEPENDENT DNA HELICASE EC 3.6.1 [Wolinella succinogenes]
          Length = 605

 Score = 43.9 bits (102), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFT-MAKVIEAMQRPAIVMAPNKILAA 207
           +  Q  AI  + + + S +  + +++G  G GKT   +A    A  + A++MAP  ILA 
Sbjct: 229 TSGQKEAIGAIWRDLSSSKAARRIIMGDVGCGKTLVILAAAYMAYPKQAVLMAPTTILAE 288

Query: 208 QLYSEFKNFFP 218
           QLY+E K F P
Sbjct: 289 QLYAEAKRFLP 299


>gi|315640551|ref|ZP_07895659.1| transcription-repair coupling factor [Enterococcus italicus DSM
           15952]
 gi|315483755|gb|EFU74243.1| transcription-repair coupling factor [Enterococcus italicus DSM
           15952]
          Length = 1179

 Score = 43.9 bits (102), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 44/240 (18%), Positives = 98/240 (40%), Gaps = 21/240 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G+ GS K   +    + +++  +V+ PN   A QL  + +                
Sbjct: 27  QLITGLAGSAKNLAIVGAFQKLEQSVVVVVPNLYYANQLAEDLR---------------- 70

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVE 288
           + Q + YV   D  +  E +      +    AT + +  E     ++   +    +   +
Sbjct: 71  HVQEQVYVFPVDEVLSAEMAFASADAKAERVATLTAIAAEERGIYILPVAALRKRLPKKQ 130

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDVA 347
           ++    + + + D ++ ++L    V+  + RQ +    G F + G  ++I+P + +  V 
Sbjct: 131 TWQNAQLSIALEDELDLEQLPKKFVQMGFVRQAMIEKPGDFSIRGSIVDIYPLNQVHPV- 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+ +F  +++ I  F   T + +  VE I I   +  +          + ++E L+ RL
Sbjct: 190 -RIELFDVEVDSIRYFDAQTQRSLEQVEKIAIQPTTELIFAPEDFEHGKETLREMLEKRL 248



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 854 DARIGYAHGQMTEIQLENTLFDFIEGEYDILVTTTIIETGVDIPNANTLFVENADYMGL- 912

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 913 ---STLYQLRGRVGRS 925


>gi|312384402|gb|EFR29139.1| hypothetical protein AND_02178 [Anopheles darlingi]
          Length = 819

 Score = 43.9 bits (102), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++      + ++   T+R  + LTE + E+   V  MH +++  +R  I++  R
Sbjct: 419 DLYDTLSIT-----QAVIFCNTRRKVDQLTEEMTEKTFTVSAMHGDMEQRDRDLIMKQFR 473

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  +LL  G+D+ +  LV
Sbjct: 474 TGSSRVLITTDLLARGIDVQQVSLV 498


>gi|254497847|ref|ZP_05110613.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
 gi|254352925|gb|EET11694.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
          Length = 584

 Score = 43.9 bits (102), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 6/133 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           LA ++   +++ V TK   E++ E L ++ +R   +H ++    R  II   R G  D+L
Sbjct: 240 LAVEEYQGVIVFVRTKSSTEEVAELLQQQGLRAMAIHGDITQALRERIIAQFRQGAIDIL 299

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLD+     V   D   +       + +  IGR  R   S V IL+      
Sbjct: 300 VATDVAARGLDVERVTHVINYDLPHD-----NETYVHRIGRTGRAGRSGVAILFVTPKES 354

Query: 696 SIQLAIDETTRRR 708
            +  +++  TR+R
Sbjct: 355 RLISSVERHTRQR 367


>gi|261195592|ref|XP_002624200.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081]
 gi|239588072|gb|EEQ70715.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081]
          Length = 1509

 Score = 43.9 bits (102), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DLR GK ++LV  ++L EG+D+  C LV   DA     + +  S IQ  GR AR   S
Sbjct: 501 IDDLRSGKKNLLVATSVLEEGIDVSACHLVVCFDA-----ISNLRSFIQRRGR-ARKERS 554

Query: 685 KVILYADTITKS 696
           K +++ +   KS
Sbjct: 555 KFVIFLNGDDKS 566


>gi|223993165|ref|XP_002286266.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977581|gb|EED95907.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 480

 Score = 43.9 bits (102), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 3/106 (2%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++ V  K +A +L   L++    V  +H + +  ER ++I   + G   +L+  ++  
Sbjct: 297 KVIVFVGKKYVAHELANQLWDEGFAVDSLHGDREQWERTKVINAFKQGTLRLLIATDVAA 356

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GLD+ + G+V  ++ D    +      I  IGR  R   +K I Y
Sbjct: 357 RGLDVKDVGVV--VNYDMPVGVNGAEDYIHRIGRTGR-AGAKGIAY 399


>gi|156837570|ref|XP_001642807.1| hypothetical protein Kpol_365p4 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113378|gb|EDO14949.1| hypothetical protein Kpol_365p4 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 691

 Score = 43.9 bits (102), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 6/85 (7%)

Query: 602 LYERN-IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           L+ +N +   Y+      ++R E I+D + GK +VLV   +  EG DIP    + +    
Sbjct: 309 LFNKNGVNAEYVLGSTNDVKRDETIKDFKNGKIEVLVNCGIFTEGTDIPSIDCILLGRPT 368

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSK 685
           K     S++ LIQ IGR  R  +SK
Sbjct: 369 K-----SRSLLIQMIGRGLRLHHSK 388


>gi|74139596|dbj|BAE40935.1| unnamed protein product [Mus musculus]
          Length = 406

 Score = 43.9 bits (102), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|77409647|ref|ZP_00786319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
 gi|77171747|gb|EAO74944.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
 gi|319744779|gb|EFV97119.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813]
          Length = 528

 Score = 43.9 bits (102), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ +IRD +    D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|296086337|emb|CBI31778.3| unnamed protein product [Vitis vinifera]
          Length = 568

 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G + ++   TKR A+ L  Y   RN R   +H ++   +R   +   R G F+VLV  +
Sbjct: 359 KGGKCIVFTQTKRDADRLA-YAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATD 417

Query: 641 LLREGLDIPECGLV 654
           +   GLDIP   L+
Sbjct: 418 VAARGLDIPNVDLI 431


>gi|271500156|ref|YP_003333181.1| transcription-repair coupling factor [Dickeya dadantii Ech586]
 gi|270343711|gb|ACZ76476.1| transcription-repair coupling factor [Dickeya dadantii Ech586]
          Length = 1150

 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 122/303 (40%), Gaps = 38/303 (12%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
           Q LLG +TG+      A+++E      +++ P+   A +L  E + F  H          
Sbjct: 17  QRLLGQLTGAACAVECAEIVERHTGLVVLITPDMQNALRLRDEIQQFTGH---------- 66

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
               P   +P  +T      S +++I   R S    L      +++  V+ +       +
Sbjct: 67  ----PVMMLPDWETLPYDSFSPHQEIVSARLSTLYQLPSLTRGVLILPVNTLMQKVCPHA 122

Query: 290 YSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +     + LK G  + +  L S L +  Y+  D  +  G F   G  +++FP   E+  +
Sbjct: 123 FLHGHALMLKKGQRLSRDRLRSQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEE-PF 181

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     + T +  +       +E+ ++R  
Sbjct: 182 RIDFFDDEIDSLRLFDADTQRTLNEVEQIHLLPAREFPTDKNAIELFRSQWREQFEVR-- 239

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
                    +A+ + Q++        + G+  +   Y + L      +P P LF Y+P  
Sbjct: 240 --------RDAEHIYQQV--------SKGTLPAGIEYWQPLFF---NQPLPALFSYLPTG 280

Query: 469 SLL 471
           +LL
Sbjct: 281 TLL 283


>gi|124505577|ref|XP_001351530.1| eukaryotic initiation factor, putative [Plasmodium falciparum 3D7]
 gi|23498289|emb|CAD49261.1| eukaryotic initiation factor, putative [Plasmodium falciparum 3D7]
 gi|117956286|gb|ABK58711.1| eIF4A-like protein [Plasmodium falciparum]
          Length = 390

 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+   + LT+ + E N  V  MH+ +   ER +I+   R  KF VL+  ++   GLD+ E
Sbjct: 265 TQMKVDWLTKKMLESNFTVCKMHAGMSQSERDDIMLKFRQCKFRVLISTDIWGRGLDVQE 324

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        S+ S I  IGR+ R
Sbjct: 325 VSLVVNYDLPN-----SRESYIHRIGRSGR 349


>gi|63054443|ref|NP_588215.2| dicer [Schizosaccharomyces pombe 972h-]
 gi|1351642|sp|Q09884|DCR1_SCHPO RecName: Full=Protein Dicer; AltName: Full=Cell cycle control
           protein dcr1; AltName: Full=RNA interference pathway
           protein dcr1; Includes: RecName: Full=Endoribonuclease
           dcr1; Includes: RecName: Full=ATP-dependent helicase
           dcr1
 gi|157310516|emb|CAB41233.2| dicer [Schizosaccharomyces pombe]
          Length = 1374

 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 14/137 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           + +   + GK++VL+   +  EG+D+P C LV      +    R+ T  +Q+ GR AR +
Sbjct: 414 DTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVI-----RFNICRTVTQYVQSRGR-ARAM 467

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHN----KKHNINPQSVKEKIMEVIDPILL 738
            SK +++ +T     +L I E     EK L+         NI    V E+   V D I+ 
Sbjct: 468 ASKFLIFLNT----EELLIHERILHEEKNLKFALSELSNSNIFDSLVCEERERVTDDIVY 523

Query: 739 EDAATTNISIDAQQLSL 755
           E   T  +      +SL
Sbjct: 524 EVGETGALLTGLYAVSL 540


>gi|270291093|ref|ZP_06197316.1| II DNA/RNA helicase [Pediococcus acidilactici 7_4]
 gi|270280489|gb|EFA26324.1| II DNA/RNA helicase [Pediococcus acidilactici 7_4]
          Length = 599

 Score = 43.9 bits (102), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 9/136 (6%)

Query: 554 LVDPPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE--DLTEYLYERNIRV 609
           L+D    +R   A+ +++ V ++I+     G R+   +   R AE  ++ + +  +    
Sbjct: 410 LIDEKTPLRHLLAQERMDYVAEQIDYYGHDGERVYGLIFCSRQAEAVEVAQIMTAKGHPT 469

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           R +       ER +IIR    G+ + LV +++  EG+DIP+   V +L   +     S  
Sbjct: 470 RALTGNTSVSEREKIIRRFEKGELEYLVTVDIFNEGVDIPKVNQVIMLRNTE-----SSI 524

Query: 670 SLIQTIGRAARNVNSK 685
             IQ +GR  R    K
Sbjct: 525 IFIQQLGRGLRKAPEK 540


>gi|260072636|gb|ACX30534.1| transcription-repair coupling factor [uncultured SUP05 cluster
           bacterium]
 gi|269468648|gb|EEZ80288.1| transcription-repair coupling factor (superfamily II helicase)
           [uncultured SUP05 cluster bacterium]
          Length = 1143

 Score = 43.9 bits (102), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 98/244 (40%), Gaps = 44/244 (18%)

Query: 284 IGSVESYSQMIVQLKI----------GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           I ++ES SQ +  L+           GD +E       L+K  Y R    +  G F + G
Sbjct: 109 ITTLESLSQHLCPLEFSKKYSFSLESGDELEMHNFSEKLLKIGYHRVTTVMEHGEFNIKG 168

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++++P   +   +R+ +F  +IE I  F P T + I  ++ I +     + T      
Sbjct: 169 SLVDLYPMGAKS-PYRIDLFDQEIESIRTFDPSTQRSIELIDQISLLPAREFATD----T 223

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
           T+++  K   K  L         +  +  E R+   +E              S +    N
Sbjct: 224 TSIEVFK---KNYLKAFNNTDDFIFTEVSESRLPSGIEFY-----------LSLFFNHTN 269

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
                 TLF+Y+P ++++  ++   T+  +   Y GD H +   A+      S +D  PL
Sbjct: 270 ------TLFDYLPHNTVVATNQGFSTL--VDQTY-GDLHTRHKNAK------SNLDRLPL 314

Query: 514 RFEE 517
            F++
Sbjct: 315 DFDQ 318



 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 8/108 (7%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           NI VR  H ++ + E   I+ D   G+F +LV   ++  G+DIP    + I +A   G  
Sbjct: 835 NIHVRIAHGQMPSKELERIMSDFYHGRFQILVCTTIIETGIDIPNANTIIINNAQNFGL- 893

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
                L Q  GR  R+ +     YA  + KS Q ++ +  ++R   +E
Sbjct: 894 ---AQLHQLRGRVGRSHHRA---YAYLVIKSHQ-SLSKNAKKRLDAIE 934


>gi|229824775|ref|ZP_04450844.1| hypothetical protein GCWU000182_00124 [Abiotrophia defectiva ATCC
           49176]
 gi|229791104|gb|EEP27218.1| hypothetical protein GCWU000182_00124 [Abiotrophia defectiva ATCC
           49176]
          Length = 681

 Score = 43.9 bits (102), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 6/102 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            E+LT  L     +++Y+H ++K  E+ +I+ +   G+ D+L+   ++  G+++P   ++
Sbjct: 492 TEELTS-LIGNKAKIKYLHGKMKNDEKNQIMEEFSDGRIDILISTTVVEVGVNVPNATVM 550

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITK 695
            I +AD+ G      SL Q  GR  R N  S  I  +   +K
Sbjct: 551 MIENADRFGL----ASLHQLRGRIGRGNAQSYCIFMSGNTSK 588


>gi|156057183|ref|XP_001594515.1| hypothetical protein SS1G_04322 [Sclerotinia sclerotiorum 1980]
 gi|154702108|gb|EDO01847.1| hypothetical protein SS1G_04322 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 638

 Score = 43.9 bits (102), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE  S R  + D+   I  A     R ++ V TKR A+++ +YL+  ++    +HS+   
Sbjct: 402 VEAASKRKALYDLLLSIPPA-----RTIIFVNTKRTADEIDDYLFNNDLPCTSIHSDRTQ 456

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDI 648
            ER + IR  R G+  +L+   +   GLD+
Sbjct: 457 REREDSIRAFRNGRMPILIATGVSARGLDV 486


>gi|146296229|ref|YP_001180000.1| transcription-repair coupling factor [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409805|gb|ABP66809.1| transcription-repair coupling factor [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 1143

 Score = 43.9 bits (102), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +I++ Y H ++   +  E++ D   GK+DVLV   ++  G+D+P    + + DAD+ G  
Sbjct: 841 DIKIAYAHGQMDERQLEEVLIDFINGKYDVLVCTTIIESGVDMPNVNTLIVEDADRLGL- 899

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R+
Sbjct: 900 ---AQLYQLRGRVGRS 912


>gi|46122961|ref|XP_386034.1| hypothetical protein FG05858.1 [Gibberella zeae PH-1]
 gi|91206664|sp|Q4IAA0|FAL1_GIBZE RecName: Full=ATP-dependent RNA helicase FAL1
          Length = 401

 Score = 43.9 bits (102), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R
Sbjct: 259 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 313

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 314 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 359


>gi|315608792|ref|ZP_07883768.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
 gi|315249486|gb|EFU29499.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
          Length = 579

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   + +   L  ++I    MHS+++  ER +I+   + G+ DVLV  +++ 
Sbjct: 247 RVIIFCGSKMKVKQVNAALQRKHINCGEMHSDLEQAERDDIMFKFKSGQLDVLVATDIVA 306

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            G+DI +  +V   D   D E +       +  IGR AR
Sbjct: 307 RGIDIDDIAMVINYDVPHDAEDY-------VHRIGRTAR 338


>gi|269794445|ref|YP_003313900.1| ATP-dependent DNA helicase RecG [Sanguibacter keddieii DSM 10542]
 gi|269096630|gb|ACZ21066.1| ATP-dependent DNA helicase RecG [Sanguibacter keddieii DSM 10542]
          Length = 758

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +A +L      R +R+  +H ++   E+   +     G+ D+LV   ++  G+D+P    
Sbjct: 562 VAAELAALEVFRGVRIGILHGQMPQAEKEAAMAAFTAGEVDLLVSTTVIEVGVDVPRATA 621

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + +LDAD+ G     + L Q  GR  R  ++ +
Sbjct: 622 MVVLDADRFGL----SQLHQLRGRVGRGADAGI 650


>gi|241760119|ref|ZP_04758217.1| transcription-repair coupling factor [Neisseria flavescens SK114]
 gi|241319573|gb|EER56003.1| transcription-repair coupling factor [Neisseria flavescens SK114]
          Length = 1134

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 17/208 (8%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ +   
Sbjct: 37  VVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ--- 92

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            ++  A        D + V   + +  +  V   +     LK G +++   L S LV   
Sbjct: 93  -IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDAG 144

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  
Sbjct: 145 YNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVSE 203

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELK 404
           I++     +    PT + A K  +   +
Sbjct: 204 IRLLPAHEF----PTDSEAQKIFRSRFR 227



 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 825 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 881

Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
              L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 882 -AQLHQLRGRVGRSHHQAYSYLLTPEYITKDAEKRLD 917


>gi|237751833|ref|ZP_04582313.1| ATP-dependent DNA recombinase RecG [Helicobacter bilis ATCC 43879]
 gi|229373199|gb|EEO23590.1| ATP-dependent DNA recombinase RecG [Helicobacter bilis ATCC 43879]
          Length = 614

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 171 QLLLGVTGSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           ++++G  G GKT   +A VI A  + +I+MAP  ILA QL+ E K + P +    FVS
Sbjct: 241 RIVMGDVGCGKTMVILASVILAYPQKSILMAPTTILAKQLFEEAKKYLPKHINISFVS 298


>gi|170086129|ref|XP_001874288.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651840|gb|EDR16080.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1307

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++E+I   + G+++VLV   +  EGLDI E  +    DADK     + T ++Q  GR  
Sbjct: 625 EQLEVINKFKAGEYNVLVATCIGEEGLDIGEIDVTVCYDADK-----APTRMVQRFGRTG 679

Query: 680 R 680
           R
Sbjct: 680 R 680


>gi|156379595|ref|XP_001631542.1| predicted protein [Nematostella vectensis]
 gi|156218584|gb|EDO39479.1| predicted protein [Nematostella vectensis]
          Length = 78

 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+  I++  R G+  +L+  ++L EGLD+P C LV   D+       +  SL+Q+ GRA+
Sbjct: 6   EQEVILKSFRTGRIKLLISTSVLEEGLDVPVCNLVVRFDSTM-----NLKSLVQSRGRAS 60

Query: 680 RNVNSKVIL 688
           R  +S  ++
Sbjct: 61  RRSDSHFVV 69


>gi|15930131|gb|AAH15505.1| DDX42 protein [Homo sapiens]
 gi|23336904|tpg|DAA00077.1| TPA_exp: SF3b125 DEAD-box protein [Homo sapiens]
 gi|158259277|dbj|BAF85597.1| unnamed protein product [Homo sapiens]
          Length = 819

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 382 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 441

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 442 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 493


>gi|22536941|ref|NP_687792.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae
           2603V/R]
 gi|22533794|gb|AAM99664.1|AE014227_8 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 2603V/R]
          Length = 528

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ +IRD +    D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|73966205|ref|XP_864504.1| PREDICTED: similar to eukaryotic translation initiation factor 4A,
           isoform 1 isoform 4 [Canis familiaris]
          Length = 351

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 226 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 285

Query: 651 CGLV 654
             LV
Sbjct: 286 VSLV 289


>gi|328698487|ref|XP_001948012.2| PREDICTED: hypothetical protein LOC100166297 [Acyrthosiphon pisum]
          Length = 2033

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 5/68 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++E++   + G F+VL+  ++  EGLDI +  L+  L+A+K     S    +Q +GR  
Sbjct: 575 EQLEVMSRFKSGDFNVLIATSVAEEGLDIGDVDLIICLEANK-----SPIKFVQRLGRTG 629

Query: 680 RNVNSKVI 687
           R  + K I
Sbjct: 630 RKRSGKCI 637


>gi|327272183|ref|XP_003220865.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like [Anolis
           carolinensis]
          Length = 680

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+  +I++ R G  ++L   ++  EGLD+PEC +V      + G + ++ +++Q  GR A
Sbjct: 420 EQQNVIQNFRKGALNLLFSTSVAEEGLDVPECNIVV-----RYGLMTNEIAMMQARGR-A 473

Query: 680 RNVNSKVILYADTITKSI 697
           R  NS   + A T +K +
Sbjct: 474 RAPNSICSVLAKTNSKEV 491


>gi|322712791|gb|EFZ04364.1| eukaryotic initiation factor 4A-12 [Metarhizium anisopliae ARSEF
           23]
          Length = 402

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R
Sbjct: 260 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 314

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 315 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 360


>gi|313901321|ref|ZP_07834808.1| helicase C-terminal domain protein [Clostridium sp. HGF2]
 gi|312953929|gb|EFR35610.1| helicase C-terminal domain protein [Clostridium sp. HGF2]
          Length = 384

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 143/360 (39%), Gaps = 55/360 (15%)

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE--LEKEGRLLEA-- 419
           YPLT  + R    I +Y N H       +  A    K EL M  I+  L K  R+  A  
Sbjct: 56  YPLTPAQKRCASEIVMYLNHH---QDVLVYAACGAGKTELVMEAIKQSLAKGCRVGFAIS 112

Query: 420 -----QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  + +R+    + L     C   E Y+    G         L+ Y     LL +D
Sbjct: 113 RRQVVLEIRERMQDAFKNLNVIAVC---EGYTEVTEGDLIICTMHQLYRYHAAFDLLIMD 169

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           E     P     YRG+    A L +    + +C+ NR              + ++ATP  
Sbjct: 170 EVD-AFP-----YRGN----AVLKQIA--IHACIGNR--------------LYLTATPDE 203

Query: 535 ---WELEQCQGIIVEQIIRPTG--LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
               +++Q +  +VE   RP G  L+ P V+      Q+  +   +    ++  + L+ V
Sbjct: 204 EMLSDVKQGKLQMVELFQRPHGYPLIVPDVKAALPSIQLYQLIRFLKRQKKEAAQTLVFV 263

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            T  +AE ++ +L    I  R      KT ++ +I++     +++ L+   +L  G+ I 
Sbjct: 264 PTIALAEQMSRWL---RIVFRCTSFTSKTKDKEKILKRFHEKRYECLIATTVLERGITIK 320

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNV---NSKVILYADTITKSIQLAIDETTR 706
              +V I  AD   F  ++ SLIQ IGR  RN+     K +      T+ I+  I    R
Sbjct: 321 GVHVV-IYHADHPVF--NEASLIQMIGRVGRNIEMPTGKGLFLCTRKTRDIERCIQALQR 377


>gi|242241588|ref|ZP_04796033.1| transcription-repair coupling factor [Staphylococcus epidermidis
           W23144]
 gi|242234969|gb|EES37280.1| transcription-repair coupling factor [Staphylococcus epidermidis
           W23144]
          Length = 1166

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 25/186 (13%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           +K+G  ++    L+ LV   Y+R+ +    G F + G  I+I+P  L     R+ +F  +
Sbjct: 138 IKVGQDIDVDTFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYP--LIGTPVRIELFDTE 195

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           ++ I +F   T +   N+  ++I   S Y+      +  +++++ ELK          + 
Sbjct: 196 VDSIRDFDVETQRSNDNINQVEITTASDYIIT----DEVIQHLQNELK----------KA 241

Query: 417 LEAQR--LEQRITYDLEMLETTGSCQSIEN--YSRYLTGRNPG---EPPPTLFEYIPEDS 469
            E  R  +E+ +  DL+  ET  S +  E+  +   L  R      E P TL +Y  +++
Sbjct: 242 YEYTRPKIEKSVRNDLK--ETYESFKLFESTFFDHQLLRRLVAFMYEKPSTLIDYFQKNA 299

Query: 470 LLFVDE 475
           ++ VDE
Sbjct: 300 IVVVDE 305


>gi|73969117|ref|XP_860802.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 14 [Canis
           familiaris]
          Length = 614

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N
Sbjct: 394 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN 435


>gi|323438789|gb|EGA96528.1| putative helicase [Staphylococcus aureus O11]
          Length = 304

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  L+ GK + ++ ++L 
Sbjct: 86  LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 145

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            EG+DIPE   V +L   +   +      IQ +GR  R  ++K
Sbjct: 146 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 183


>gi|256077046|ref|XP_002574819.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238660034|emb|CAZ31052.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 637

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 4/111 (3%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++ G  IL+ V T+R A+ L  YLY +  +V  +H +    +R   +   R G+  VLV 
Sbjct: 428 SEAGTLILVFVETRRGADALENYLYSQKFQVASIHGDRTQEDRELALSCFRSGRTPVLVA 487

Query: 639 INLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
             +   GLDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 488 TAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDK 538


>gi|224127806|ref|XP_002329182.1| predicted protein [Populus trichocarpa]
 gi|222870963|gb|EEF08094.1| predicted protein [Populus trichocarpa]
          Length = 531

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +   AE+L   L   +IRV  +HS +   +R  +I D R GK  VL+  ++L  
Sbjct: 377 MLIFVQSIERAEELYGELKFDSIRVGVIHSNLSQEQRESVIDDFRAGKTWVLIATDVLGR 436

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G+  +++ D   F     S I  IGR+ R
Sbjct: 437 GMDFK--GVKCVINYD---FPDCAASYIHRIGRSGR 467


>gi|194225335|ref|XP_001496219.2| PREDICTED: similar to Endoribonuclease Dicer (Helicase with RNase
           motif) (Helicase MOI) [Equus caballus]
          Length = 1785

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 354 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 406

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GR AR   S  I+ ADT
Sbjct: 407 YRSYVQSKGR-ARAPISNYIMLADT 430


>gi|149065924|gb|EDM15797.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_a [Rattus
           norvegicus]
          Length = 652

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N
Sbjct: 394 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN 435


>gi|73969107|ref|XP_531736.2| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 1 [Canis
           familiaris]
          Length = 664

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 348 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 407

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 408 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 461

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 462 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 488


>gi|328870357|gb|EGG18732.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 734

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           Q+GL   IL+ V +K  A +L + L   NI V  +HS+    +R  I++  R GK  VL+
Sbjct: 484 QKGLEPPILIFVQSKERATELFQELIFDNINVDVIHSDRTQQQRDTIVQRFRSGKIWVLI 543

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+  G+D      V   D     F  +  S +  IGR  R
Sbjct: 544 CTELMARGMDFKGVNYVINFD-----FPNTIASYVHRIGRTGR 581


>gi|238854795|ref|ZP_04645125.1| primosomal protein N' [Lactobacillus jensenii 269-3]
 gi|282933873|ref|ZP_06339221.1| primosomal protein N' [Lactobacillus jensenii 208-1]
 gi|238832585|gb|EEQ24892.1| primosomal protein N' [Lactobacillus jensenii 269-3]
 gi|281301962|gb|EFA94216.1| primosomal protein N' [Lactobacillus jensenii 208-1]
          Length = 797

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 15/106 (14%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINL 641
            L   T+++ E+LTE L       R +  +V T  R     EI+     G  D+L+G  +
Sbjct: 553 FLGTGTQKVEEELTELL----PGARVLRMDVDTTRRKGSYKEILDKFGAGNADILLGTQM 608

Query: 642 LREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           + +GLD P   LV +++AD   +L       ++   L Q  GRA R
Sbjct: 609 IAKGLDFPNVTLVGVINADTALYLPDYNASEKTFELLTQVAGRAGR 654


>gi|221117600|ref|XP_002163251.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           [Hydra magnipapillata]
          Length = 790

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G  +L+ V  K  +E++   L E+   +  +H +    ER  +++  +  +F +LV  ++
Sbjct: 521 GGSVLIFVTKKSNSEEVAANLKEQGYELGLIHGDFDQFERNNVLKQFKQKQFLILVATDV 580

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
              GLDIP    V   D       R  T+    IGR  R    K I Y     +    A 
Sbjct: 581 AARGLDIPSIKTVINYDV-----ARDITTHTHRIGRTGR-AGEKGIAYTLITPQDTHFAA 634

Query: 702 D 702
           D
Sbjct: 635 D 635


>gi|219114457|ref|XP_002176399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402645|gb|EEC42635.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 575

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 2/100 (2%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I++ V  K    DL   L+E    V  +H +    ER  +++  + G+  VL+  ++  
Sbjct: 387 KIIVFVAKKISCNDLANRLWEDGFAVDSLHGDRPQWERTRVMQAFKGGQLRVLIATDVAA 446

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLD+ + G+V  ++ D    +      +  IGR  R  N
Sbjct: 447 RGLDVKDVGVV--VNYDMPSGVNGVEDYVHRIGRTGRAGN 484


>gi|148997750|ref|ZP_01825314.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus
           pneumoniae SP11-BS70]
 gi|148999065|ref|ZP_01826496.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP11-BS70]
 gi|168575113|ref|ZP_02721076.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae MLV-016]
 gi|307068324|ref|YP_003877290.1| RecG-like helicase [Streptococcus pneumoniae AP200]
 gi|147755104|gb|EDK62160.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
           SP11-BS70]
 gi|147756249|gb|EDK63291.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus
           pneumoniae SP11-BS70]
 gi|183578801|gb|EDT99329.1| ATP-dependent DNA helicase RecG [Streptococcus pneumoniae MLV-016]
 gi|306409861|gb|ADM85288.1| RecG-like helicase [Streptococcus pneumoniae AP200]
          Length = 671

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  + D+LV   ++  G+++P   +
Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERETDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|6468270|emb|CAB61567.1| ATP-dependent RNA helicase [Candida albicans]
          Length = 399

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD  NL   Q +   +   TK     L + + ++N  V  MH ++K  ER  I+ D R
Sbjct: 258 DLYD--NLTITQAV---IFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D   DKE +       I  IGR+ R
Sbjct: 313 RGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENY-------IHRIGRSGR 358


>gi|61367710|gb|AAX43036.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic
           construct]
          Length = 407

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|325204285|gb|ADY99738.1| transcription-repair coupling factor [Neisseria meningitidis
           M01-240355]
          Length = 1374

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 17/212 (8%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L + L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            V  I++     +    PT + A K  +   +
Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227



 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 1065 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1121

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 1122 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1157


>gi|25010852|ref|NP_735247.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae NEM316]
 gi|76786821|ref|YP_329524.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909]
 gi|76799328|ref|ZP_00781491.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 18RS21]
 gi|77406817|ref|ZP_00783849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
 gi|77411327|ref|ZP_00787675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|23095231|emb|CAD46441.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561878|gb|ABA44462.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae A909]
 gi|76585318|gb|EAO61913.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 18RS21]
 gi|77162587|gb|EAO73550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|77174571|gb|EAO77408.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
          Length = 528

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ +IRD +    D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|332638230|ref|ZP_08417093.1| ATP-dependent DNA helicase RecG [Weissella cibaria KACC 11862]
          Length = 678

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L+EY +    RV  +H  +   E+ +++   +  +F VLV   ++  G+D+P   ++ I
Sbjct: 490 ELSEY-FAPTYRVGLLHGRLSNQEKEDVMAAFKANEFQVLVSTTVIEVGVDVPNSTVMLI 548

Query: 657 LDADKEGFLRSKTSLIQTIGRAARN 681
           LDAD+ G     + L Q  GR  R 
Sbjct: 549 LDADRFGL----SQLHQLRGRVGRG 569


>gi|308455475|ref|XP_003090271.1| hypothetical protein CRE_17660 [Caenorhabditis remanei]
 gi|308265015|gb|EFP08968.1| hypothetical protein CRE_17660 [Caenorhabditis remanei]
          Length = 637

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 16/128 (12%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++E +R    G+  VLV  ++  EGLDI +C LV      K  +  ++ + +Q  GR  
Sbjct: 439 KQMEKLRKFASGEIRVLVATSVAEEGLDIAKCNLVI-----KYNYATNEIAHVQRRGR-G 492

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI--NPQSVKEKIM----EVI 733
           R +NSK IL    IT SI L   E   R ++ + +     I  NP + +E +      + 
Sbjct: 493 RAINSKCIL----ITNSIPLRDQEGANRDKENMMNKALLTIQSNPFAFREAVTSEASNIW 548

Query: 734 DPILLEDA 741
           + IL EDA
Sbjct: 549 NRILREDA 556


>gi|298708482|emb|CBJ30606.1| eukaryotic initiation factor 4A [Ectocarpus siliculosus]
          Length = 404

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + L+E + ER+  +  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 279 TRRRVDWLSEKMQERDFTISCMHGDMGQGERDVIMREFRSGSSRVLITTDLLARGIDVQQ 338

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        ++ + I  IGR+ R
Sbjct: 339 VSLVINYD-----LPTNRENYIHRIGRSGR 363


>gi|258566652|ref|XP_002584070.1| ATP-dependent RNA helicase ded1 [Uncinocarpus reesii 1704]
 gi|237905516|gb|EEP79917.1| ATP-dependent RNA helicase ded1 [Uncinocarpus reesii 1704]
          Length = 670

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+E+L  +N     +H +    ER   +   R  +  +LV   +   G
Sbjct: 445 LIFVETKRMADSLSEFLINQNFPATAIHGDRTQRERERALEYFRNARCPILVATAVAARG 504

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 505 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGL 540


>gi|293333116|ref|NP_001169206.1| hypothetical protein LOC100383059 [Zea mays]
 gi|223975507|gb|ACN31941.1| unknown [Zea mays]
          Length = 364

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L + L   +IRV  +H+++   +R + + +LR GK  VL+   ++  
Sbjct: 212 VLIFVQSKERAKELYKELAFDDIRVDVIHADLSEQQRQDAVDNLRAGKTWVLIATEVIAR 271

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G+ ++++ D   F  S  + I  IGR+ R
Sbjct: 272 GMDFK--GVASVINYD---FPESAAAYIHRIGRSGR 302


>gi|213692705|ref|YP_002323291.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524166|gb|ACJ52913.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458861|dbj|BAJ69482.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 1194

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 38/221 (17%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P G +PA  A + +G+  +    ++L V  SG+    A+      R      PN I  AQ
Sbjct: 51  PEGLRPALAAAIGQGVAGKPGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 104

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L  E     PH               E   PR DT   + +       R++H +    + 
Sbjct: 105 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDTDPMF 143

Query: 269 RNDCIVVSSV-----SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
               I+V  +       + G+G VE      +   +G+ +   E    L++  Y R D+ 
Sbjct: 144 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVDLV 198

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + RG F V G  +++FP        R+  FG++I+ I EF+
Sbjct: 199 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 238


>gi|119614682|gb|EAW94276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Homo
           sapiens]
          Length = 828

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 391 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 450

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 451 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 502


>gi|317010106|gb|ADU80686.1| ATP-dependent DNA helicase RecG [Helicobacter pylori India7]
          Length = 621

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177
           N KI  P       N+S+ +  F     +  + DQ  AI ++   + S    + L++G  
Sbjct: 209 NAKIACP-------NNSERLKAFIASLPFKLTNDQQNAIKEIQSDLTSPIACKRLIVGDV 261

Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           G GKT   +A ++ A     ++MAP  ILA QLY+E   F P
Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|300120302|emb|CBK19856.2| unnamed protein product [Blastocystis hominis]
          Length = 563

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 7/97 (7%)

Query: 585 ILLTVLTKRMAEDL-TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +L+ V +K  A  L TE  Y+R + V  +HS++  L R   I   R G+  VL+  +LL 
Sbjct: 371 MLVFVQSKDRARQLYTELAYDR-VNVDVIHSDLSNLARTAAINRFRTGETWVLIATDLLG 429

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD    GL  +++ D   F +S    I  IGR  R
Sbjct: 430 RGLDF--LGLNTVVNYD---FPQSGVDYIHRIGRTGR 461


>gi|298369030|ref|ZP_06980348.1| transcription-repair coupling factor [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298283033|gb|EFI24520.1| transcription-repair coupling factor [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 513

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 17/212 (8%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L + L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            V  I++     +    PT + A K  +   +
Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227


>gi|227891526|ref|ZP_04009331.1| DNA/RNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227866673|gb|EEJ74094.1| DNA/RNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 950

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 9/130 (6%)

Query: 555 VDPPVEIR--SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE--DLTEYLYERNIRVR 610
           VD    +R  +A  +V+ + D+++     GL++   V   R  E  +L +   +   + +
Sbjct: 407 VDETTNLRYLTAPKRVKYILDQLDYYGYSGLKVHGLVFCSRQDEALELAQAFTDAGHQAK 466

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            + ++     R  ++R+L  GK + ++ +NL  EG+DIP    V +L        +S   
Sbjct: 467 ALTNQDSNERRRAVVRELEEGKIEYIITVNLFNEGIDIPCVNQVVMLRNT-----QSSIV 521

Query: 671 LIQTIGRAAR 680
            IQ +GR  R
Sbjct: 522 FIQQLGRGLR 531


>gi|225076550|ref|ZP_03719749.1| hypothetical protein NEIFLAOT_01598 [Neisseria flavescens
           NRL30031/H210]
 gi|224952113|gb|EEG33322.1| hypothetical protein NEIFLAOT_01598 [Neisseria flavescens
           NRL30031/H210]
          Length = 730

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E L   L E NI +  +H  +K  E+ E++ +   G  +VLV   ++  G+D+P   L+ 
Sbjct: 546 EQLQAALPELNIGL--VHGRMKAAEKAEVMAEFAAGCLNVLVATTVIEVGVDVPNAALMV 603

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I  A++ G       L Q  GR  R       V+L+A+ +++
Sbjct: 604 IEHAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPLSE 641


>gi|254422402|ref|ZP_05036120.1| transcription-repair coupling factor [Synechococcus sp. PCC 7335]
 gi|196189891|gb|EDX84855.1| transcription-repair coupling factor [Synechococcus sp. PCC 7335]
          Length = 1177

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 90/207 (43%), Gaps = 35/207 (16%)

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            IV +  +    +  VE++    +++ +G  +  K+L  SL K  Y++     + G +  
Sbjct: 131 AIVTTERALQPHLPPVEAFRPYCLEITLGMELNLKDLGLSLAKLGYEKVSSVEVEGQWSQ 190

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD I++FP   E +  R+ +FG+++E + EF P   + +  +E +              
Sbjct: 191 RGDIIDVFPVAAE-LPVRMELFGDELERLREFDPANQRSLDKIEAL-------------- 235

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML---ETTGSCQSIENYSRY 448
           L T   Y               G L+ +   E+ +  DL      ET  +   IE   R+
Sbjct: 236 LLTTTDY---------------GPLILSALEEKELLEDLLTEESQETFAATGKIEGARRF 280

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           +      E P ++ +Y+P+D+L+ +DE
Sbjct: 281 MGLAF--ESPASILDYLPDDTLVVIDE 305


>gi|126339554|ref|XP_001367967.1| PREDICTED: similar to DEAD-box protein p72 [Monodelphis domestica]
          Length = 772

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 456 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 515

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 516 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 569

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 570 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 596


>gi|47678395|emb|CAG30318.1| DDX17 [Homo sapiens]
 gi|109451124|emb|CAK54423.1| DDX17 [synthetic construct]
 gi|109451702|emb|CAK54722.1| DDX17 [synthetic construct]
 gi|119580647|gb|EAW60243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_c [Homo
           sapiens]
 gi|169145045|emb|CAQ08924.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
 gi|208967743|dbj|BAG72517.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [synthetic construct]
          Length = 652

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 394 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 447

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 448 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 474


>gi|93587673|ref|NP_001035277.1| probable ATP-dependent RNA helicase DDX17 isoform 4 [Mus musculus]
 gi|76364169|sp|Q501J6|DDX17_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX17; AltName:
           Full=DEAD box protein 17
 gi|63146347|gb|AAH96036.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Mus musculus]
          Length = 650

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N
Sbjct: 394 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN 435


>gi|40068493|ref|NP_951062.1| probable ATP-dependent RNA helicase DDX17 isoform 1 [Mus musculus]
 gi|74181626|dbj|BAE30078.1| unnamed protein product [Mus musculus]
 gi|74220643|dbj|BAE31531.1| unnamed protein product [Mus musculus]
 gi|148672698|gb|EDL04645.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_a [Mus
           musculus]
          Length = 652

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N
Sbjct: 394 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN 435


>gi|297261056|ref|XP_001092491.2| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Macaca
           mulatta]
 gi|297708870|ref|XP_002831174.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Pongo
           abelii]
 gi|332859781|ref|XP_525595.3| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Pan
           troglodytes]
 gi|3122595|sp|Q92841|DDX17_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX17; AltName:
           Full=DEAD box protein 17; AltName: Full=DEAD box protein
           p72; AltName: Full=RNA-dependent helicase p72
 gi|1592565|gb|AAC50787.1| DEAD-box protein p72 [Homo sapiens]
 gi|2832596|emb|CAB09792.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
 gi|119580650|gb|EAW60246.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_f [Homo
           sapiens]
          Length = 650

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 394 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 447

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 448 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 474


>gi|332995097|gb|AEF05152.1| ATP-dependent DNA helicase RecG [Alteromonas sp. SN2]
          Length = 690

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 12/114 (10%)

Query: 589 VLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           VL  + AED    L   L E N+ +  +H  +K  E+++++ D + G+ D+LV   ++  
Sbjct: 495 VLECQAAEDAAVILRTALPELNVGL--VHGRLKPAEKLQVMADFKAGELDLLVATTVIEV 552

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSK-VILYADTITKS 696
           G+D+P   ++ I + ++ G       L Q  GR  R  V S+ V++Y   ++K+
Sbjct: 553 GVDVPNASIMIIENPERLGL----AQLHQLRGRVGRGAVESQCVLMYQSPLSKT 602


>gi|330826895|ref|YP_004390198.1| ATP-dependent DNA helicase RecG [Alicycliphilus denitrificans K601]
 gi|329312267|gb|AEB86682.1| ATP-dependent DNA helicase RecG [Alicycliphilus denitrificans K601]
          Length = 705

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 12/118 (10%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DL+E L    + V  +HS + + E+  ++ + + G+  VLV   ++  G+D+P   L+ I
Sbjct: 518 DLSEALP--GVTVGLLHSRMPSAEKKAVMEEFKSGRMGVLVSTTVIEVGVDVPNASLMVI 575

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTRRREKQL 712
             A++ G     + L Q  GR  R   +   V+LY+   +      + ET R R K +
Sbjct: 576 EHAERFGL----SQLHQLRGRVGRGAAASACVLLYSTGDSGR----LGETARDRLKAM 625


>gi|289624078|ref|ZP_06457032.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 578

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 121/307 (39%), Gaps = 55/307 (17%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +   +   
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELEHG----------VLVVPITTALHRLAPTKFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPFRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P T + I  VE++++                       L  R   L+
Sbjct: 184 LFDDEIETLRTFDPDTQRSIDKVESVRL-----------------------LPAREFPLQ 220

Query: 412 KEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           KE       R  +R   D       + L +  +   IE Y          E   TLF+Y+
Sbjct: 221 KEEVTRFKARFRERFDVDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYL 275

Query: 466 PEDSLLF 472
           P+D+ +F
Sbjct: 276 PQDTQVF 282


>gi|194226836|ref|XP_001916530.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Equus
           caballus]
          Length = 791

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 475 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 534

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 535 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 588

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 589 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 615


>gi|50420221|ref|XP_458643.1| DEHA2D04048p [Debaryomyces hansenii CBS767]
 gi|74602737|sp|Q6BT27|FAL1_DEBHA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49654310|emb|CAG86782.1| DEHA2D04048p [Debaryomyces hansenii]
          Length = 399

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK     LT+ + + N  V  MH ++K  ER  I+ D R
Sbjct: 258 DLYDSLTIT-----QAVIFCNTKVKVNWLTDQMKKANFTVVAMHGDMKQDERDSIMNDFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D   DKE +       +  IGR+ R
Sbjct: 313 TGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENY-------VHRIGRSGR 358


>gi|118400980|ref|XP_001032811.1| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila]
 gi|89287156|gb|EAR85148.1| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila SB210]
          Length = 481

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 8/114 (7%)

Query: 568 VEDVY-DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           ++D+  D+I  +  Q  RI++ V ++  +E + ++L + +I+    H+ + T +RI+ + 
Sbjct: 313 IQDILVDQIKKSTSQ--RIIVFVQSQASSESIAKHLQDHDIKALSFHANLNTEQRIDTLA 370

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +   GK  VLV  +L   GLD      V   D     F     S +  +GR  R
Sbjct: 371 NFDEGKVRVLVSTDLASRGLDFQNVDHVIQFD-----FALDAVSFLHRVGRTCR 419


>gi|42518357|ref|NP_964287.1| RNA helicase [Lactobacillus johnsonii NCC 533]
 gi|41582642|gb|AAS08253.1| probable RNA helicase [Lactobacillus johnsonii NCC 533]
          Length = 484

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++   +R+ +++  R GK D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVSHVYNYD---IPQDPNSYVHRIGRTGR 332


>gi|332296036|ref|YP_004437959.1| primosomal protein N' [Thermodesulfobium narugense DSM 14796]
 gi|332179139|gb|AEE14828.1| primosomal protein N' [Thermodesulfobium narugense DSM 14796]
          Length = 731

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 10/109 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGLDIP 649
           ++R+AE+L     + N+  R     V T  +++ +++D+  GK D LVG  ++ +GL+ P
Sbjct: 491 SQRIAEELKNLFPDANV-ARIDSDSVNTYSKLKAVLKDIADGKIDFLVGTQIITKGLNFP 549

Query: 650 ECGLVAI--LD-----ADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA 690
           +   V I  L+      D   F +    L+Q  GRA R +V+ KV++ A
Sbjct: 550 KINFVGIPFLEPLTSIPDFRSFEKLYQLLVQVTGRAGRYSVDGKVVIQA 598


>gi|312194934|ref|YP_004014995.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
 gi|311226270|gb|ADP79125.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
          Length = 785

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 596 EDLTEYLYE---RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           E+L  +L +     +R+  +H  +    +  ++     G+ DVLV   ++  G+D+P   
Sbjct: 588 EELLPWLADGPLAGLRLAALHGRLPADAKDSVMTRFAAGELDVLVATTVIEVGVDVPNAT 647

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           ++AI+DAD+ G     + L Q  GR  R   + V L
Sbjct: 648 VIAIMDADRFGV----SQLHQLRGRVGRGQGAGVCL 679


>gi|121634996|ref|YP_975241.1| transcription-repair coupling factor [Neisseria meningitidis FAM18]
 gi|120866702|emb|CAM10454.1| transcription-repair coupling factor [Neisseria meningitidis FAM18]
 gi|325138289|gb|EGC60858.1| transcription-repair coupling factor [Neisseria meningitidis
           ES14902]
          Length = 1375

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 17/212 (8%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L + L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            V  I++     +    PT + A K  +   +
Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 1066 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1122

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 1123 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1158


>gi|322698074|gb|EFY89847.1| eukaryotic initiation factor 4A-12 [Metarhizium acridum CQMa 102]
          Length = 402

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R
Sbjct: 260 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 314

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 315 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 360


>gi|312215634|emb|CBX95586.1| similar to eukaryotic initiation factor 4A-I [Leptosphaeria
           maculans]
          Length = 396

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH ++  ++R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 271 TRRKVDWLTDKLTARDFTVSAMHGDMDQIQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 330

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 331 VSLVINYDLPANRENYI 347


>gi|308237838|ref|NP_001184123.1| endoribonuclease Dicer [Sus scrofa]
 gi|307715909|gb|ADN88174.1| dicer [Sus scrofa]
          Length = 1915

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 491 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 543

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GRA   +++ V+L ADT
Sbjct: 544 YRSYVQSKGRARAPISNYVML-ADT 567


>gi|302686080|ref|XP_003032720.1| hypothetical protein SCHCODRAFT_67353 [Schizophyllum commune H4-8]
 gi|300106414|gb|EFI97817.1| hypothetical protein SCHCODRAFT_67353 [Schizophyllum commune H4-8]
          Length = 652

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 8/112 (7%)

Query: 578 AAQQGLRILLTVL---TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           AA  G  + LT++   TKRMA+ L ++L    +    +H +    ER   +   R G+  
Sbjct: 423 AANGGNGMGLTLVFVETKRMADGLCDFLLSHRMPATSIHGDRTQREREMALNTFRSGRTP 482

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +LV   +   GLDIP   +  +++ D  G +      +  IGR  R  N+ V
Sbjct: 483 ILVATAVAARGLDIPN--VTHVVNYDLPGDI---DDYVHRIGRTGRAGNTGV 529


>gi|270261435|ref|ZP_06189708.1| hypothetical protein SOD_a06670 [Serratia odorifera 4Rx13]
 gi|270044919|gb|EFA18010.1| hypothetical protein SOD_a06670 [Serratia odorifera 4Rx13]
          Length = 1159

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 55/296 (18%), Positives = 130/296 (43%), Gaps = 35/296 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TG+      A+++E    P +++AP+   A +L  E + F      +  V+    ++  
Sbjct: 32  LTGAACAVECAEIVERHNGPVMLIAPDMQNALRLRDEIQQF-----TDQMVTTLPDWETL 86

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            Y    D++   +  I+ ++  + H  T         I++   + +  +   E      +
Sbjct: 87  PY----DSFSPHQEIISARLSSLYHLPTMV----RGVIILPVNTLMQRVCPHEFLHGHAL 138

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K G  + +++L + L +  Y+  D  +  G F   G  ++++P   E+  +R+  F +
Sbjct: 139 VMKKGQRLSREKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEE-PYRIDFFDD 197

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ +  F   T + +  VE I +     +    PT  TA++  + + + +  E+ +   
Sbjct: 198 EIDSLRIFDVDTQRTLSEVEAINLLPAHEF----PTDKTAIELFRSQWREQF-EVRR--- 249

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             +A+ + Q++        + G+  +   Y + L      +P P+LF Y+P ++L+
Sbjct: 250 --DAEHIYQQV--------SKGTWPAGIEYWQPLFF---SQPLPSLFSYLPANTLI 292



 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 833 EKAAEKLAELVPEARIAIGHGQMRERDLERV--MNDFHHQRFNVLVCTTIIETGIDIPSA 890

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD+ G       L Q  GR  R+
Sbjct: 891 NTIIIERADRFGL----AQLHQLRGRVGRS 916


>gi|119484480|ref|ZP_01619097.1| Transcription-repair coupling factor [Lyngbya sp. PCC 8106]
 gi|119457954|gb|EAW39077.1| Transcription-repair coupling factor [Lyngbya sp. PCC 8106]
          Length = 1147

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 1/103 (0%)

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            IV +  S    +  VE++    + LK G + + K+L   L    Y+R  +    G +  
Sbjct: 125 AIVATERSLQPHLPPVEAFKPYCLTLKQGTTQDSKQLDEQLATLGYERVSLVETEGQWSR 184

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            GD ++IFP   E +  R+  FG+++E I EF P T + +  +
Sbjct: 185 RGDIVDIFPVAAE-LPVRLEWFGDELERIREFDPTTQRSLDKI 226


>gi|58429986|gb|AAW78361.1| vasa RNA helicase [Tribolium castaneum]
          Length = 580

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TKR A+ L  +L E+NI+   +H +    ER + + D + G   VLV   +  
Sbjct: 411 RTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFKTGHRKVLVATGVAA 470

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDI +   V   D  K     S    +  IGR  R  N
Sbjct: 471 RGLDIKDVQHVINYDLPK-----SIDEYVHRIGRTGRVGN 505


>gi|31077172|sp|P29562|IF4A1_RABIT RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
          Length = 398

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 273 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 332

Query: 651 CGLV 654
             LV
Sbjct: 333 VSLV 336


>gi|317014937|gb|ADU82373.1| ATP-dependent DNA helicase RecG [Helicobacter pylori Gambia94/24]
          Length = 623

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177
           N KI  P       N+S+ +  F     +  + DQ  AI ++   + S    + L++G  
Sbjct: 209 NAKIACP-------NNSERLKAFIASLPFKLTRDQQNAIKEIQSDLTSSIACKRLIIGDV 261

Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           G GKT   +A ++ A     ++MAP  ILA QLY+E   F P
Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|301619410|ref|XP_002939087.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like [Xenopus
           (Silurana) tropicalis]
          Length = 624

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 5/59 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+ E+I   R G+ ++LV  ++  EGLDIP+C +V      + G + ++ +++Q  GRA
Sbjct: 422 EQREVIEKFRKGELNLLVSTSVAEEGLDIPQCNVVV-----RYGLMTNEIAMVQARGRA 475


>gi|238853544|ref|ZP_04643916.1| transcription-repair coupling factor [Lactobacillus gasseri 202-4]
 gi|238833840|gb|EEQ26105.1| transcription-repair coupling factor [Lactobacillus gasseri 202-4]
          Length = 1165

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 60/309 (19%), Positives = 126/309 (40%), Gaps = 27/309 (8%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           +EK  LL GV     +  + +++   QRP I++  ++  A  L  E  N  P   V  F 
Sbjct: 22  KEKRSLLTGVNSGAFSAVLMQMLSTWQRPLILVEDSEDKAQLLLDELGNLLPDEMVFSF- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
                  P      T T +     +++++  ++    +    R   +V++  +  Y +  
Sbjct: 81  -------PVDATIATQTAVASPDELSQRLQTLKFLTEK----RAGIVVITPQALQYKLSD 129

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
              + +     K     +  EL +   +  Y+R++I    G F   GD ++++P   E+ 
Sbjct: 130 PRDFIKAKQVFKPEAEFDLDELTAWFTQAGYRRENIVARPGEFARRGDILDVYPLDQEN- 188

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++++ + EF   T + +   + + I      V     L+ A++ IK+++   
Sbjct: 189 PVRIEFFGDEVDTVKEFDAATQRSLEEKDIVSIGPALDRVFSSRNLHEAIEKIKQDMNES 248

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           +   E          ++      +++LE  G     ENY+  +    P      L +Y+ 
Sbjct: 249 IANEEN---------VKNYFVKAIDLLEADGLP---ENYAFLIDYLLP--KSFNLVDYLD 294

Query: 467 EDSLLFVDE 475
           ++ LL  D+
Sbjct: 295 KNGLLLFDD 303


>gi|227529544|ref|ZP_03959593.1| ATP-dependent DNA helicase/translocase [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350629|gb|EEJ40920.1| ATP-dependent DNA helicase/translocase [Lactobacillus vaginalis
           ATCC 49540]
          Length = 486

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 57/101 (56%), Gaps = 8/101 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+E ++ +R GK++ L+  ++L  G+  PE   V +L AD + F  S ++L+Q  GRA 
Sbjct: 389 KRLEKVQQMREGKYEFLITTSILERGVTFPEID-VFVLGADDQVF--SSSALVQIAGRAG 445

Query: 680 RNVN---SKVILYADTITKSIQLAIDETT--RRREKQLEHN 715
           R+ +    KV+ +  + ++ ++ A  +     R+ ++L H 
Sbjct: 446 RSASRPTGKVMFWIQSYSRQVREAQRQIAYMNRKGRRLLHG 486


>gi|254524632|ref|ZP_05136687.1| ATP-dependent DNA helicase RecG [Stenotrophomonas sp. SKA14]
 gi|219722223|gb|EED40748.1| ATP-dependent DNA helicase RecG [Stenotrophomonas sp. SKA14]
          Length = 703

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +K  E++  +   + G+ D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 527 GVRVGLVHGRLKAAEKLATMVAFKTGEIDLLVATTVIEVGVDVPNASLMVIENAERLGL- 585

Query: 666 RSKTSLIQTIGRAARN--VNSKVILYADTITK 695
                L Q  GR  R   V+  V+LY   +++
Sbjct: 586 ---AQLHQLRGRVGRGSAVSRCVLLYQAPLSQ 614


>gi|254172456|ref|ZP_04879131.1| DNA repair protein Rad25 [Thermococcus sp. AM4]
 gi|214033385|gb|EEB74212.1| DNA repair protein Rad25 [Thermococcus sp. AM4]
          Length = 462

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 34/185 (18%)

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------- 568
           W  +R   I + A  G    E    +  E +IR   L  P  E+ +  + +         
Sbjct: 232 WRRVRGEEIKIEAVVGPIIYE----VRAEDLIREGFLAKPRFEVITYESSMPSFSERYKE 287

Query: 569 --EDVY---DEINLA--------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
             EDV    DE N A         ++G R+L+ V      + L E L +  I+  ++ S+
Sbjct: 288 LYEDVVMNNDERNRAIVAKAKELVRKGHRVLIDVKRIEHGKILKEMLEKEGIKAEFLSSQ 347

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            +   R E++   + G+  VL+   LL+EG+DIPE   + +    K     S    IQTI
Sbjct: 348 SQN--RWEVLEAYKNGEIPVLIS-TLLKEGVDIPEISAIILAGGGK-----SDIMTIQTI 399

Query: 676 GRAAR 680
           GRA R
Sbjct: 400 GRALR 404


>gi|198273896|ref|ZP_03206428.1| hypothetical protein BACPLE_00030 [Bacteroides plebeius DSM 17135]
 gi|198272974|gb|EDY97243.1| hypothetical protein BACPLE_00030 [Bacteroides plebeius DSM 17135]
          Length = 820

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 10/100 (10%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  G
Sbjct: 615 IINDFEEGKTDILIGTQMISKGLDFDRVSVVGILNADSMMNYPDFRSYERAFQLMAQVAG 674

Query: 677 RAAR-NVNSKVILYADTITKSI--QLAIDETTRRREKQLE 713
           RA R N    V+L   +    +  Q+  ++ TR  ++Q+E
Sbjct: 675 RAGRKNKQGLVVLQTKSPENPLIHQIMANDYTRLYQEQME 714


>gi|269468391|gb|EEZ80056.1| recG-like helicase [uncultured SUP05 cluster bacterium]
          Length = 688

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 6/102 (5%)

Query: 589 VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           VL    A +   YL E   N+ V  +H ++   E+ EI+R     K DVLV   ++  G+
Sbjct: 492 VLRAESAINTHHYLQENLPNLSVVLIHGKMNKDEKSEIMRQFSANKIDVLVATTVIEVGV 551

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           ++P   L+ I ++++ G       L Q  GR  R  ++ + +
Sbjct: 552 NVPNASLMVIENSERLGL----AQLHQLRGRVGRGADASICI 589


>gi|255528251|ref|ZP_05395069.1| ATP-dependent DNA helicase, RecQ family [Clostridium
           carboxidivorans P7]
 gi|296188052|ref|ZP_06856444.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Clostridium carboxidivorans
           P7]
 gi|255508054|gb|EET84476.1| ATP-dependent DNA helicase, RecQ family [Clostridium
           carboxidivorans P7]
 gi|296047178|gb|EFG86620.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Clostridium carboxidivorans
           P7]
          Length = 666

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 90/191 (47%), Gaps = 25/191 (13%)

Query: 523 PTTIVVSATPGSWEL-EQCQGIIVEQ--IIRPTGLVDPPVEIRSAR----TQVEDVYDEI 575
           P T+ ++AT  S E+ + C    +++  +I+   L+   + ++  +     + ED + E+
Sbjct: 187 PITLGLTATLNSKEITDICNDFRIDKDNVIKDDALIRSEIALKVLKFENEKEKEDKFWEL 246

Query: 576 NLAAQQGLRILLTVLTK---RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            L   +  +IL+ +  K   R  E+LT+   ER  +    H ++ + +R EII   +   
Sbjct: 247 -LNIHKNEKILVYLYRKYHQRGVENLTKDALERGFKATGFHGDMSSKDRQEIINRYKNND 305

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFL--RSKTSLIQTIGRAARNV--NSKVIL 688
            DV+   N    G+DIP+  +V         F+   S     Q IGR AR++   +  +L
Sbjct: 306 IDVIFATNAFGMGIDIPDIKVVI-------HFMIPESVEQYYQEIGRGARDIPAANAYVL 358

Query: 689 YADTITKSIQL 699
           Y +   K+IQ+
Sbjct: 359 YTN---KNIQV 366


>gi|145491061|ref|XP_001431530.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398635|emb|CAK64132.1| unnamed protein product [Paramecium tetraurelia]
          Length = 532

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V TK+  EDL  YL E       +H +    +R  ++++ +  K  +L   ++  
Sbjct: 316 KVLIFVETKKDCEDLASYLSEHGFFCMSLHGDKTQQQRDYVMKEFKASKCKLLCATDVAS 375

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +  LV   D     F     + +  IGR  R
Sbjct: 376 RGLDVRDISLVINYD-----FPNQIDNYVHRIGRTGR 407


>gi|124025499|ref|YP_001014615.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str.
           NATL1A]
 gi|123960567|gb|ABM75350.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str.
           NATL1A]
          Length = 846

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           TE   E N+ +  +H ++K++E+ E+I++    K D+LV   ++  G+D+P   ++ I D
Sbjct: 660 TEIFSEFNVEL--LHGKMKSVEKQEVIQNFINKKSDILVSTTVIEVGVDVPNASVMLIED 717

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           +D+ G       L Q  GR  R       L +
Sbjct: 718 SDRFGL----AQLHQLRGRVGRGATKSYCLLS 745


>gi|73969115|ref|XP_860773.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 13 [Canis
           familiaris]
          Length = 624

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 308 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 367

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N
Sbjct: 368 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN 409


>gi|3986287|dbj|BAA34994.1| DjVLGB [Dugesia japonica]
          Length = 781

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 14/149 (9%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           IL+ V TK+ A+ L  +L  +   V  +H +   +ER   +   R G+  +LV   +   
Sbjct: 439 ILIFVETKKGADSLARFLLSKGYPVSSIHGDRSQVEREAALSMFRNGQCPILVATAVAAR 498

Query: 645 GLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAA-----RNVNSKVILY-----A 690
           GLDIP    V   D  +D E ++    +T  +   GRA      +N N  + L      A
Sbjct: 499 GLDIPNVKHVINYDLPSDIEEYVHRIGRTGRLGNHGRATSFYVDKNNNIAIDLVDLLKEA 558

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHN 719
           + I      A+ +  +R      +NK+HN
Sbjct: 559 NQIVPQWLSALADELKRNSTMGSNNKRHN 587


>gi|281352202|gb|EFB27786.1| hypothetical protein PANDA_013869 [Ailuropoda melanoleuca]
          Length = 400

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 275 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 334

Query: 651 CGLV 654
             LV
Sbjct: 335 VSLV 338


>gi|261278544|pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
          Length = 187

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L      V  +H +++T ER  +I D R G+  VL+  N+L  G
Sbjct: 39  IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 98

Query: 646 LDIPECGLVAILD----ADKEGFLRSKTSLIQTIGRAAR 680
           +DIP   +V   D    A+ +       + I  IGR  R
Sbjct: 99  IDIPTVSMVVNYDLPTLANGQA---DPATYIHRIGRTGR 134


>gi|254409584|ref|ZP_05023365.1| Type III restriction enzyme, res subunit family [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183581|gb|EDX78564.1| Type III restriction enzyme, res subunit family [Microcoleus
           chthonoplastes PCC 7420]
          Length = 505

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 16/127 (12%)

Query: 574 EINLAAQQGLRILLTVLTKRMAE--------DLTEYLYERNIRVRYMHSEVKTLERIEII 625
           EI L  +  LR+L  ++ K   E        + T Y   + + +  +       ER EI+
Sbjct: 315 EIALGTEGKLRVLADLVAKHYPERILVFTNDNATVYRISQELLIPAITHHTPVKERHEIL 374

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NV 682
           +  R G + +LV  ++L EG+D+P+  +  IL         S+   +Q +GR  R   + 
Sbjct: 375 QRFREGDYKILVASHVLNEGVDVPDARVAIILSGTG-----SEREYVQRLGRVLRKGTDQ 429

Query: 683 NSKVILY 689
           N   ILY
Sbjct: 430 NKLAILY 436


>gi|320590875|gb|EFX03318.1| ATP-dependent RNA helicase dbp3 [Grosmannia clavigera kw1407]
          Length = 541

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RIL+  L K+ A  +  +L  + +RV  +H +++  +R   +   + G+  VLV  ++  
Sbjct: 379 RILVFCLYKKEAVRVENFLQGQGVRVCSIHGDLRQEQRTRSLEAFKTGQTPVLVATDVAA 438

Query: 644 EGLDIPECGLV 654
            GLDIPE  LV
Sbjct: 439 RGLDIPEVKLV 449


>gi|296475171|gb|DAA17286.1| endoribonuclease Dicer [Bos taurus]
          Length = 1922

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GRA   +++ V+L ADT
Sbjct: 543 YRSYVQSKGRARAPISNYVML-ADT 566


>gi|302383040|ref|YP_003818863.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193668|gb|ADL01240.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 696

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 14/124 (11%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A DL   L   NI +   H ++   ER  ++ D   G+  VLV   ++  G+D+P   ++
Sbjct: 502 ARDLRRIL---NIEIGLAHGQMPGAEREAVMADFADGRLPVLVATTVVEVGVDVPNATIM 558

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTRRREKQL 712
            I  AD+ G       L Q  GR  R   S   ++LY          A+ ET R R + L
Sbjct: 559 VIEHADRFGL----AQLHQLRGRVGRGAKSSACILLYGGQ-----DGALGETARERLETL 609

Query: 713 EHNK 716
              +
Sbjct: 610 RRTE 613


>gi|257097239|pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
           Dbp5
          Length = 189

 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L      V  +H +++T ER  +I D R G+  VL+  N+L  G
Sbjct: 41  IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 100

Query: 646 LDIPECGLVAILDADKEGFLRSK-TSLIQTIGRAAR 680
           +DIP    V   D       ++   + I  IGR  R
Sbjct: 101 IDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGR 136


>gi|229592861|ref|YP_002874980.1| putative ATP-dependent helicase [Pseudomonas fluorescens SBW25]
 gi|229364727|emb|CAY52698.1| putative ATP-dependent helicase [Pseudomonas fluorescens SBW25]
          Length = 1419

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 12/160 (7%)

Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612
           PPV + +  A    E VYD +   A++    L+ V T+R+AE L  +L ER     V   
Sbjct: 250 PPVPLSAVMANDVWERVYDRLAELAREHRTTLIFVNTRRLAERLARHLSERLGKTAVAAH 309

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R++  + L+ G+  VL+    L  G+DI +  LV  +     G   S    +
Sbjct: 310 HGSLAKEMRLDAEQRLKGGELQVLIATASLELGIDIGDVDLVCQI-----GSPGSINGFL 364

Query: 673 QTIGRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709
           Q +GR+   V    K  L+A T    I+  A+ +  RR E
Sbjct: 365 QRVGRSRHQVGGTPKGRLFATTRDDLIECAALLDCVRRGE 404


>gi|221140387|ref|ZP_03564880.1| helicase [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|302752351|gb|ADL66528.1| DEAD/H helicase / Type III restriction enzyme, res subunit
           [Staphylococcus aureus subsp. aureus str. JKD6008]
          Length = 953

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  L+ GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            EG+DIPE   V +L   +   +      IQ +GR  R  ++K
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549


>gi|254412667|ref|ZP_05026440.1| transcription-repair coupling factor [Microcoleus chthonoplastes
           PCC 7420]
 gi|196180402|gb|EDX75393.1| transcription-repair coupling factor [Microcoleus chthonoplastes
           PCC 7420]
          Length = 1192

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/229 (19%), Positives = 103/229 (44%), Gaps = 36/229 (15%)

Query: 256 DRMRHSAT--RSLLERNDCIVVSSVSCIYG-------IGSVESYSQMIVQLKIGDSVEQK 306
           D +RHS+T      E N  + V+ ++ +         +  V++++   + +  G + + K
Sbjct: 109 DLVRHSSTPDSGDTEENHSVTVNGLAIVATHAALQPHLPPVKAFAPYCLTINQGMTRDIK 168

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           ++ + L +  Y R  +  + G +   GD +++FP   E +  R+  FG+++E++ EF P 
Sbjct: 169 DIDNQLARLGYDRVPLVEMEGQWSRRGDIVDVFPVAAE-LPVRLEWFGDELEQLREFDPG 227

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           + + +  +E + +          P +  A+                     +AQ+++  +
Sbjct: 228 SQRSLDKIEQLVLTPTDF----SPIITDALSDA------------------QAQQVQLHL 265

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
             + + L   G    +E   R+L      E P +L +Y+P+++++ +DE
Sbjct: 266 GEEEQALWQAGG--HLEGSRRFLG--IAFEQPASLLDYLPDNTVIAIDE 310


>gi|156544419|ref|XP_001607535.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 52
           [Nasonia vitripennis]
          Length = 596

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           Q+GL   +L+ V +K  A++L + L    I V  +HS+    +R  ++R  R GK  VL+
Sbjct: 381 QRGLTPPVLVFVQSKERAQELFKELIYDGINVDLIHSDRTQTQRDNVVRCFREGKIWVLI 440

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+  G+D     LV   D     F  S  S I  IGR  R
Sbjct: 441 CTELMGRGIDFIGVNLVINYD-----FPPSAISYIHRIGRTGR 478


>gi|133777033|gb|AAH43036.4| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Mus musculus]
          Length = 810

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 382 VLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 441

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 442 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 493


>gi|42733596|ref|NP_976235.1| endoribonuclease Dicer [Bos taurus]
 gi|257051053|sp|Q6TUI4|DICER_BOVIN RecName: Full=Endoribonuclease Dicer
 gi|38679195|gb|AAR26432.1| dicer [Bos taurus]
          Length = 1923

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GRA   +++ V+L ADT
Sbjct: 543 YRSYVQSKGRARAPISNYVML-ADT 566


>gi|29348161|ref|NP_811664.1| primosomal protein N' [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340064|gb|AAO77858.1| primosomal protein N' (replication factor Y) [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 818

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  
Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671

Query: 676 GRAAR-NVNSKVILYADTITKSI 697
           GRA R N   +V+L   +I   I
Sbjct: 672 GRAGRKNKRGRVVLQTKSIDHPI 694


>gi|332231227|ref|XP_003264799.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Nomascus
           leucogenys]
          Length = 644

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 326 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 385

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 386 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 439

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 440 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 466


>gi|255065241|ref|ZP_05317096.1| transcription-repair coupling factor [Neisseria sicca ATCC 29256]
 gi|255050662|gb|EET46126.1| transcription-repair coupling factor [Neisseria sicca ATCC 29256]
          Length = 1158

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 17/212 (8%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L + L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            V  I++     +    PT + A K  +   +
Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227



 Score = 37.7 bits (86), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 849 RIGVAHRQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 905

Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
              L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 906 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 941


>gi|90962424|ref|YP_536340.1| DNA/RNA helicase [Lactobacillus salivarius UCC118]
 gi|90821618|gb|ABE00257.1| DNA/RNA helicase, DEAD/DEAH box family [Lactobacillus salivarius
           UCC118]
          Length = 951

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 9/130 (6%)

Query: 555 VDPPVEIR--SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE--DLTEYLYERNIRVR 610
           VD    +R  +A  +V+ + D+++     GL++   V   R  E  +L +   +   + +
Sbjct: 408 VDETTNLRYLTAPKRVKYILDQLDYYGYSGLKVHGLVFCSRQDEALELAQAFTDAGHQAK 467

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            + ++     R  ++R+L  GK + ++ +NL  EG+DIP    V +L        +S   
Sbjct: 468 ALTNQDSNERRRAVVRELEEGKIEYIITVNLFNEGIDIPCVNQVVMLRNT-----QSSIV 522

Query: 671 LIQTIGRAAR 680
            IQ +GR  R
Sbjct: 523 FIQQLGRGLR 532


>gi|326634440|pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
           H337r And Ip6
 gi|326634442|pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
           And Ip6
          Length = 188

 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L      V  +H +++T ER  +I D R G+  VL+  N+L  G
Sbjct: 40  IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 99

Query: 646 LDIPECGLVAILDADKEGFLRSK-TSLIQTIGRAAR 680
           +DIP    V   D       ++   + I  IGR  R
Sbjct: 100 IDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGR 135


>gi|325142431|gb|EGC64835.1| transcription-repair coupling factor [Neisseria meningitidis
           961-5945]
 gi|325198436|gb|ADY93892.1| transcription-repair coupling factor [Neisseria meningitidis G2136]
          Length = 1375

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 17/212 (8%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L + L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            V  I++     +    PT + A K  +   +
Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 1066 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1122

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 1123 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1158


>gi|330795215|ref|XP_003285670.1| hypothetical protein DICPUDRAFT_149527 [Dictyostelium purpureum]
 gi|325084396|gb|EGC37825.1| hypothetical protein DICPUDRAFT_149527 [Dictyostelium purpureum]
          Length = 757

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 14/178 (7%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
           P  I V ++  + E        V+Q+++P   +D P  + +    + D   E+NL  +  
Sbjct: 498 PLKIRVKSSSANQESSAIVSKNVKQVVKPIVDLDRPQYLTNFLKSIMD--KELNLRNRSL 555

Query: 583 LRILLTVLTKRMA-----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           + + +  + + M      + L      R  +   +H ++K +ER  +I D + GK  ++V
Sbjct: 556 ILVFVNTIKQAMPVLNIIDKLCVSYTGRKYKCSCIHGDMKQIERDAVINDFKSGKLTIIV 615

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTI 693
             ++L  G+ I     V   D     F  S    I  +GR  R  N    + L+ +T+
Sbjct: 616 ATDILGRGIHINNLRFVINYD-----FPTSLEQYIHRVGRTGRQGNKGHALTLFTETV 668


>gi|296191894|ref|XP_002743821.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
           [Callithrix jacchus]
          Length = 650

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 394 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 447

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 448 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 474


>gi|224477065|ref|YP_002634671.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421672|emb|CAL28486.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 507

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 4/122 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
            G+  + + D      S T  I   GRA +      + + + I       I++T  RR +
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK--KGIAVTFVNPIEMDYIRQIEQTNDRRMR 364

Query: 711 QL 712
            L
Sbjct: 365 AL 366


>gi|167465104|ref|ZP_02330193.1| DEAD/DEAH box helicase domain protein [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 376

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L +R      +H ++   +R  ++R  R G  DVLV  ++   GLD+  
Sbjct: 164 TKRRVDELSEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDV-- 221

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  +++ D     +   S +  IGR  R
Sbjct: 222 SGVSHVINFD---LPQDPESYVHRIGRTGR 248


>gi|149540257|ref|XP_001511956.1| PREDICTED: similar to eukaryotic initiation factor 4AI
           [Ornithorhynchus anatinus]
          Length = 373

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 248 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 307

Query: 651 CGLV 654
             LV
Sbjct: 308 VSLV 311


>gi|32880087|gb|AAP88874.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17, 72kDa [synthetic
           construct]
 gi|61372130|gb|AAX43789.1| DEAD box polypeptide 17 [synthetic construct]
 gi|61372139|gb|AAX43790.1| DEAD box polypeptide 17 [synthetic construct]
          Length = 651

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 394 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 447

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 448 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 474


>gi|66551115|ref|XP_623285.1| PREDICTED: eukaryotic initiation factor 4A-like isoform 2 [Apis
           mellifera]
          Length = 423

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++      + ++   T+R  + LTE +  R+  V  MH +++  ER  I+R  R
Sbjct: 282 DLYDTLSIT-----QAVIFCNTRRKVDWLTESMRTRDFTVSAMHGDMEQKERDLIMRQFR 336

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 337 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 374


>gi|83589747|ref|YP_429756.1| replication restart DNA helicase PriA [Moorella thermoacetica ATCC
           39073]
 gi|83572661|gb|ABC19213.1| replication restart DNA helicase PriA [Moorella thermoacetica ATCC
           39073]
          Length = 821

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 8/112 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF-----LRSKTS--LIQTI 675
           EI R    G  D+LVG   +  G+D P   LV +++AD   +      R +T   L Q  
Sbjct: 618 EIYRTFAGGHADILVGTQTIARGMDFPGVTLVGVVNADLSLYQPDFRARERTFQLLTQVA 677

Query: 676 GRAARNVNSKVILYA-DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           GRA R    KVI+   +    +I LA  +  RR  +Q    ++    P  VK
Sbjct: 678 GRAGRKSAGKVIIQTYNPADPAITLAAAQDYRRFYEQEIAGRRAGGYPPFVK 729


>gi|113475354|ref|YP_721415.1| transcription-repair coupling factor [Trichodesmium erythraeum
           IMS101]
 gi|110166402|gb|ABG50942.1| transcription-repair coupling factor [Trichodesmium erythraeum
           IMS101]
          Length = 1180

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 68/166 (40%), Gaps = 15/166 (9%)

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NI 607
           RP      P ++ +ART +     E+N    +G ++   V      E+L   L E     
Sbjct: 805 RPIKTHLAPYDLETARTAIRQ---ELN----RGGQVFYVVPRIEGIEELAGKLREMIPGA 857

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+   H ++   E   I+     G+ D+LV   ++  GLDIP    + I DA K G    
Sbjct: 858 RINIGHGKMDAAELESIMLTFSAGEADILVCTTIIESGLDIPRVNTILIEDAQKFGL--- 914

Query: 668 KTSLIQTIGRAAR-NVNSKV-ILYADTITKSIQLAIDETTRRREKQ 711
            + L Q  GR  R  V +   + Y  T +  I L  D   R R  Q
Sbjct: 915 -SQLYQLRGRVGRAGVQAHAWLFYPTTSSGGIALTDDAQKRLRAIQ 959



 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 12/109 (11%)

Query: 280 CIYGIGSVESYSQMIVQLKIG-----------DSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           C+  + S+ S S+ +   KI            DS+E+  L   LV+  Y+   +    G 
Sbjct: 153 CLTLMASIASSSKTLGSTKISNTDIEINHSESDSLERPSLEEKLVQMGYELVPLVETEGQ 212

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +   GD I++FP   E +  R+  FG+++ +I EF P T + +  +  I
Sbjct: 213 WSRRGDIIDVFPVASE-LPVRLEWFGDELRQIREFDPSTQRSLDKIAQI 260


>gi|269942063|emb|CBI50475.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
          Length = 953

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  L+ GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            EG+DIPE   V +L   +   +      IQ +GR  R  ++K
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549


>gi|255547506|ref|XP_002514810.1| ATP binding protein, putative [Ricinus communis]
 gi|223545861|gb|EEF47364.1| ATP binding protein, putative [Ricinus communis]
          Length = 1388

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           T+Y+   N R++    + +     EI+ + R GK +++V  ++L EGLD+  C LV   D
Sbjct: 407 TQYIAGNNFRLQSQSRKTQN----EIVEEFREGKVNIIVATSILEEGLDVQSCNLVVRFD 462

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
                   + +S IQ+ GR AR  NS  +L
Sbjct: 463 PST-----TVSSFIQSRGR-ARMQNSDYLL 486


>gi|193664366|ref|XP_001952053.1| PREDICTED: eukaryotic initiation factor 4A-like [Acyrthosiphon
           pisum]
          Length = 411

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++      + ++   T+R  E LTE +  +   V  MH E+   +R  I+R  R
Sbjct: 270 DLYDTLSIT-----QAVIFCNTRRKVEWLTENMRLKTFTVSAMHGEMDQRQRELIMRQFR 324

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  +LL  G+D+ +  LV   D        ++ + I  IGR+ R
Sbjct: 325 SGSSRVLITTDLLARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGR 370


>gi|94676686|ref|YP_588583.1| ATP-dependent DNA helicase RecG [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219836|gb|ABF13995.1| ATP-dependent DNA helicase RecG [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 699

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 8/110 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            K   E++  YL E  +++  +H  +K  E+ ++++  + GK  +LV   ++  G+DIP 
Sbjct: 508 VKATWEEIRSYLPE--LQIGLIHGRMKAQEKQQLMQAFQAGKIRLLVATTVIEVGVDIPN 565

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
             L+ I +A++ G       L Q  GR  R + +   V++Y   + K+ Q
Sbjct: 566 ASLIIIENAERLGL----AQLHQLRGRVGRAIVASHCVLIYNSPLNKAAQ 611


>gi|20095114|ref|NP_614961.1| Hef nuclease [Methanopyrus kandleri AV19]
 gi|19888409|gb|AAM02891.1| ERCC4-like helicase-nuclease [Methanopyrus kandleri AV19]
          Length = 741

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 9/122 (7%)

Query: 595 AEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           A+ + +YL E  I V  +     +K  E++++I+ ++ G+  VLV  ++  EGLD+P C 
Sbjct: 368 AKLIADYLKEIGISVGVLLGKEHMKEHEQLDVIKSIKRGECRVLVSTSVGEEGLDLPTCE 427

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKSIQLAIDETTRRREK 710
            V + +      + S+   IQ IGR AR+  V +  +L A     ++        RRREK
Sbjct: 428 EVVLYEP-----VPSEIRTIQRIGRTARDGAVGNAHVLVARGSFPTLDEIYFHVARRREK 482

Query: 711 QL 712
           ++
Sbjct: 483 KM 484


>gi|268565371|ref|XP_002639425.1| Hypothetical protein CBG04018 [Caenorhabditis briggsae]
 gi|187036206|emb|CAP24812.1| hypothetical protein CBG_04018 [Caenorhabditis briggsae AF16]
          Length = 393

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LT+ + E N  V  MH +++  +R E++++ R G   VL+  ++   GLD+P+  LV   
Sbjct: 275 LTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGNTRVLISTDVWARGLDVPQVSLVINY 334

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
           D        ++   I  IGR+ R
Sbjct: 335 D-----LPNNRELYIHRIGRSGR 352


>gi|16803851|ref|NP_465336.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes EGD-e]
 gi|224501387|ref|ZP_03669694.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL R2-561]
 gi|16411265|emb|CAC99889.1| lmo1811 [Listeria monocytogenes EGD-e]
          Length = 682

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 507 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 562

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R V+ S  IL AD  T+
Sbjct: 563 HQLRGRVGRGVDQSYCILIADPKTE 587


>gi|194333556|ref|YP_002015416.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           aestuarii DSM 271]
 gi|194311374|gb|ACF45769.1| DEAD/DEAH box helicase domain protein [Prosthecochloris aestuarii
           DSM 271]
          Length = 607

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 8/158 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V T+   +DL+E L  R      +  E+   +R + I  L+ GK +++V  ++   
Sbjct: 273 VIIFVRTRTATQDLSEKLRARGYAAAALSGEMVQHQREKTIDQLKNGKLNIIVATDVAAR 332

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D  +D E ++      I   GRA R+ ++  IL+  +   S+   I+
Sbjct: 333 GLDVERVTHVINYDIPSDTESYVHR----IGRTGRAGRSGDA--ILFVTSREMSMLRTIE 386

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
              RR   ++E      IN + + +   ++ D I  ED
Sbjct: 387 RAVRRSIDRMELPSAEMINDKRIAKFKQQISDVISTED 424


>gi|325132515|gb|EGC55208.1| transcription-repair coupling factor [Neisseria meningitidis M6190]
          Length = 1232

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 17/212 (8%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L + L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            V  I++     +    PT + A K  +   +
Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227



 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 923  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 979

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 980  -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1015


>gi|298386156|ref|ZP_06995713.1| primosomal protein N' [Bacteroides sp. 1_1_14]
 gi|298261384|gb|EFI04251.1| primosomal protein N' [Bacteroides sp. 1_1_14]
          Length = 818

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  
Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671

Query: 676 GRAAR-NVNSKVILYADTITKSI 697
           GRA R N   +V+L   +I   I
Sbjct: 672 GRAGRKNKRGRVVLQTKSIDHPI 694


>gi|271969938|ref|YP_003344134.1| type III restriction enzyme, res subunit [Streptosporangium roseum
           DSM 43021]
 gi|270513113|gb|ACZ91391.1| type III restriction enzyme, res subunit [Streptosporangium roseum
           DSM 43021]
          Length = 1028

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 9/126 (7%)

Query: 564 ARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           AR     + D++ +L A +GL   ++V   R A  + E+  +  ++   +       ER 
Sbjct: 528 ARLVFNALLDKVSDLQAVRGLGFCVSV---RHAHFMAEFFTKAGLKSLAVDGSTDPAERR 584

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             +  LR GK   L  ++L  EGLDIP+   + +L   +     S T  +Q +GR  R  
Sbjct: 585 AALLALRDGKVTFLFAVDLFNEGLDIPDVNTLLLLRPTE-----SATVFLQQLGRGLRRT 639

Query: 683 NSKVIL 688
            +K +L
Sbjct: 640 PNKDVL 645


>gi|255029718|ref|ZP_05301669.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes LO28]
          Length = 648

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 507 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 562

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R V+ S  IL AD  T+
Sbjct: 563 HQLRGRVGRGVDQSYCILIADPKTE 587


>gi|254674059|emb|CBA09843.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha275]
          Length = 488

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 8/100 (8%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E L   L E NI +  +H  +K  E+ E++     G+ +VLV   ++  G+D+P   L+ 
Sbjct: 304 EQLQTALPELNIGL--VHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMV 361

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
           I  A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 362 IEHAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 397


>gi|253569563|ref|ZP_04846973.1| primosomal protein N [Bacteroides sp. 1_1_6]
 gi|251841582|gb|EES69663.1| primosomal protein N [Bacteroides sp. 1_1_6]
          Length = 818

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  
Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671

Query: 676 GRAAR-NVNSKVILYADTITKSI 697
           GRA R N   +V+L   +I   I
Sbjct: 672 GRAGRKNKRGRVVLQTKSIDHPI 694


>gi|198282005|ref|NP_001095463.1| probable ATP-dependent RNA helicase DDX17 [Bos taurus]
 gi|154757449|gb|AAI51649.1| DDX17 protein [Bos taurus]
 gi|296487004|gb|DAA29117.1| DEAD box polypeptide 17 [Bos taurus]
          Length = 650

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 394 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 447

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 448 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 474


>gi|149408137|ref|NP_001092258.1| RNA helicase LGP2 [Rattus norvegicus]
          Length = 678

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+I++ R GK ++LV  ++  EGLDI +C +V      + G L ++ S++Q  GRA
Sbjct: 422 EVIQEFRDGKLNLLVATSVAEEGLDIAQCNVVV-----RYGLLTNEISMVQARGRA 472


>gi|17539846|ref|NP_501018.1| Dicer Related Helicase family member (drh-1) [Caenorhabditis
           elegans]
 gi|21703172|gb|AAM76083.1|AF480439_1 dicer-related helicase [Caenorhabditis elegans]
 gi|2662588|gb|AAB88350.1| Dicer related helicase protein 1 [Caenorhabditis elegans]
          Length = 1037

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 13/99 (13%)

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S+ K +E++++  D   G+  +LV  ++  EGLD+PEC LV      K  +  ++ + +Q
Sbjct: 751 SKQKQMEKLKMFAD---GEIRILVSTSVAEEGLDVPECSLVI-----KYNYATNEIAHVQ 802

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
             GR  R +NS+ +L    IT SI L   E+  R ++ L
Sbjct: 803 RRGR-GRALNSECVL----ITNSIALRDQESNNRDKESL 836


>gi|157817897|ref|NP_001100529.1| ATP-dependent RNA helicase DDX42 [Rattus norvegicus]
 gi|149054552|gb|EDM06369.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (predicted) [Rattus
           norvegicus]
          Length = 929

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDIPVLVATDVAAR 560

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612


>gi|57650998|ref|YP_187294.1| helicase, putative [Staphylococcus aureus subsp. aureus COL]
 gi|87162160|ref|YP_495065.1| putative helicase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88196426|ref|YP_501250.1| hypothetical protein SAOUHSC_02790 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151222598|ref|YP_001333420.1| hypothetical protein NWMN_2386 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161510687|ref|YP_001576346.1| helicase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|258451206|ref|ZP_05699239.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|282920480|ref|ZP_06328203.1| helicase [Staphylococcus aureus A9765]
 gi|284025507|ref|ZP_06379905.1| putative helicase [Staphylococcus aureus subsp. aureus 132]
 gi|294849036|ref|ZP_06789781.1| helicase [Staphylococcus aureus A9754]
 gi|304379685|ref|ZP_07362418.1| helicase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57285184|gb|AAW37278.1| helicase, putative [Staphylococcus aureus subsp. aureus COL]
 gi|87128134|gb|ABD22648.1| putative helicase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203984|gb|ABD31794.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150375398|dbj|BAF68658.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160369496|gb|ABX30467.1| helicase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|257860998|gb|EEV83813.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|282594426|gb|EFB99412.1| helicase [Staphylococcus aureus A9765]
 gi|294824415|gb|EFG40839.1| helicase [Staphylococcus aureus A9754]
 gi|304341861|gb|EFM07767.1| helicase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315196341|gb|EFU26694.1| helicase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320139052|gb|EFW30935.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320142618|gb|EFW34425.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329315168|gb|AEB89581.1| Helicase [Staphylococcus aureus subsp. aureus T0131]
 gi|329726395|gb|EGG62859.1| helicase C-terminal domain protein [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 953

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  L+ GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            EG+DIPE   V +L   +   +      IQ +GR  R  ++K
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549


>gi|288575749|ref|ZP_06393935.1| transcription-repair coupling factor [Neisseria mucosa ATCC 25996]
 gi|288567231|gb|EFC88791.1| transcription-repair coupling factor [Neisseria mucosa ATCC 25996]
          Length = 529

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 17/212 (8%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L + L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            V  I++     +    PT + A K  +   +
Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227


>gi|241889944|ref|ZP_04777242.1| ATP-dependent DNA helicase RecG [Gemella haemolysans ATCC 10379]
 gi|241863566|gb|EER67950.1| ATP-dependent DNA helicase RecG [Gemella haemolysans ATCC 10379]
          Length = 669

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 6/103 (5%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVT 177
           N +I        INN  KDI  F+    +  +G Q   I +++  +++  K+ +LL G  
Sbjct: 230 NSRIENNRYCVGINN--KDINEFKNSLPFMLTGAQSRVIDEIVDDLNNPYKMDRLLQGDV 287

Query: 178 GSGKTFTMAKVIEAMQRPAI---VMAPNKILAAQLYSEFKNFF 217
           GSGKT   A  + A  +      +MAP +ILA Q +  F  FF
Sbjct: 288 GSGKTAVAAATLYATIKAGYQTAIMAPTEILANQHFETFFEFF 330


>gi|149247861|ref|XP_001528318.1| hypothetical protein LELG_00838 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448272|gb|EDK42660.1| hypothetical protein LELG_00838 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 760

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L   L    I  +Y+  E    ER  I+ D +LGK  VL  + +  EG DIP    + +
Sbjct: 398 ELCSTLQSHGINAQYVTGETSKSERAAIVEDFKLGKIPVLCNVEVFTEGTDIPNIDSIIL 457

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR 680
                     S+T + Q+IGR  R
Sbjct: 458 ARPT-----LSRTLVTQSIGRGLR 476


>gi|197118286|ref|YP_002138713.1| ATP-dependent DNA helicase RecG [Geobacter bemidjiensis Bem]
 gi|197087646|gb|ACH38917.1| ATP-dependent DNA helicase RecG [Geobacter bemidjiensis Bem]
          Length = 772

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 14/121 (11%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           +MAE L + ++  ++RV  +H  +   E+  ++++ + G  D+LV   ++  G+D+P   
Sbjct: 576 QMAEHLAQDVFP-DLRVAVLHGRMPAAEKEAVMKEFKAGTTDILVATTVIEVGIDVPNAT 634

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           ++ I  A++ G     + L Q  GR  R             ++ I LA D+ +   +K+L
Sbjct: 635 VMVIEHAERFGL----SQLHQLRGRVGRGSER---------SRCILLAGDKLSEDGQKRL 681

Query: 713 E 713
           E
Sbjct: 682 E 682


>gi|29346241|ref|NP_809744.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568326|ref|ZP_04845737.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
 gi|29338136|gb|AAO75938.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842399|gb|EES70479.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
          Length = 422

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 9/107 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   +++T+ L    + V  MHS+++  +R  ++ + + G+ ++LV  +++ 
Sbjct: 246 RVIIFASSKIKVKEVTKALKMMKLNVGEMHSDLEQAQREVVMHEFKAGRINILVATDIVA 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+DI +  LV   D   D E +       +  IGR AR  N  V L
Sbjct: 306 RGIDIDDIRLVINFDVPHDSEDY-------VHRIGRTARANNDGVAL 345


>gi|328956669|ref|YP_004374055.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
 gi|328672993|gb|AEB29039.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
          Length = 533

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  R   +H ++   +R+ +++  + GK D+LV  ++   GLDI  
Sbjct: 253 TKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLKSFKTGKLDILVATDVAARGLDI-- 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 311 SGVTHVYNYD---IPQDPESYVHRIGRTGR 337


>gi|304387420|ref|ZP_07369611.1| transcription-repair coupling factor [Neisseria meningitidis ATCC
           13091]
 gi|304338513|gb|EFM04632.1| transcription-repair coupling factor [Neisseria meningitidis ATCC
           13091]
          Length = 1301

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 17/212 (8%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  KRLKVVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L + L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            V  I++     +    PT + A K  +   +
Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227



 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 992  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1048

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 1049 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1084


>gi|297695020|ref|XP_002824758.1| PREDICTED: Fanconi anemia group M protein-like [Pongo abelii]
          Length = 1967

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++E+++  R G ++ LV   +  EGLDI E  L+   D+ K     S   LIQ +GR  
Sbjct: 524 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLIQRMGRTG 578

Query: 680 RNVNSKVIL 688
           R    ++++
Sbjct: 579 RKRQGRIVV 587


>gi|193669397|ref|XP_001951491.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Acyrthosiphon
           pisum]
          Length = 401

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 260 DLYDTLTIT-----QAVIFCSTKRKVDWLTEKMRESNFTVSSMHGDMPQKERDAIMKEFR 314

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 315 AGQTRVLITTDIWARGIDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 360


>gi|170579138|ref|XP_001894695.1| ATP-dependent RNA helicase An3 [Brugia malayi]
 gi|158598597|gb|EDP36460.1| ATP-dependent RNA helicase An3, putative [Brugia malayi]
          Length = 754

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A DL  YL +    V  +H ++K  +R + +   R G   +LV   +   G
Sbjct: 554 LVFVETKRGASDLAYYLQKDGYNVVAIHGDLKQFDREKHLETFRSGVATILVATAVAARG 613

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D  +D + ++    +T  +  +G A    N K
Sbjct: 614 LDIPNVKHVINYDLPSDIDEYVHRIGRTGRVGNVGLATSFFNDK 657


>gi|91087239|ref|XP_975511.1| PREDICTED: similar to eIF4AIII CG7483-PA [Tribolium castaneum]
 gi|270010579|gb|EFA07027.1| hypothetical protein TcasGA2_TC009998 [Tribolium castaneum]
          Length = 404

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 263 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMRENNFTVSSMHGDMPQKERDNIMKEFR 317

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 318 SGQSRVLITTDVWARGIDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 363


>gi|73969095|ref|XP_860442.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 5 [Canis
           familiaris]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 314 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 373

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 374 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 427

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 428 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 454


>gi|53715495|ref|YP_101487.1| primosomal protein N' [Bacteroides fragilis YCH46]
 gi|253566634|ref|ZP_04844087.1| primosomal protein N [Bacteroides sp. 3_2_5]
 gi|52218360|dbj|BAD50953.1| primosomal protein N' [Bacteroides fragilis YCH46]
 gi|251944806|gb|EES85281.1| primosomal protein N [Bacteroides sp. 3_2_5]
 gi|301164952|emb|CBW24513.1| putative primosomal protein N' [Bacteroides fragilis 638R]
          Length = 819

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  
Sbjct: 613 KIIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRSYERAFQLMAQVA 672

Query: 676 GRAAR-NVNSKVILYADTITKSI 697
           GRA R N   +V+L   +I   I
Sbjct: 673 GRAGRKNKRGRVVLQTKSIDHPI 695


>gi|21284138|ref|NP_647226.1| hypothetical protein MW2409 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|300910703|ref|ZP_07128153.1| helicase [Staphylococcus aureus subsp. aureus TCH70]
 gi|21205581|dbj|BAB96274.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|300887683|gb|EFK82878.1| helicase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 951

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  L+ GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            EG+DIPE   V +L   +   +      IQ +GR  R  ++K
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549


>gi|87311618|ref|ZP_01093735.1| transcription-repair coupling factor [Blastopirellula marina DSM
           3645]
 gi|87285621|gb|EAQ77538.1| transcription-repair coupling factor [Blastopirellula marina DSM
           3645]
          Length = 1077

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 19/149 (12%)

Query: 272 CIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            I+V+S+ S +  + S  + +    ++ +GD ++ +EL   LV+ ++       + G F 
Sbjct: 127 AIIVTSIESLLQPVPSAANVAANSRRVAVGDQLDVEELAQWLVRHKFHSTSAVELPGEFS 186

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA-------NS 383
           + G  +++F    E  A R+ +FG++IE I +F   T + +  +ET++I           
Sbjct: 187 LRGGILDVFAPDWEQPA-RIELFGDEIESIRQFEIGTQRSLHPLETVEITVLRYGKGQTG 245

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           H+    PT +  +          LIELE+
Sbjct: 246 HFSDYLPTASACV----------LIELER 264


>gi|322705505|gb|EFY97090.1| DEAD/DEAH box RNA helicase [Metarhizium anisopliae ARSEF 23]
          Length = 650

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 36/67 (53%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G+R ++   ++R  ++L ++LY   + V  MHSE    ER   +R  R G+  +L+   +
Sbjct: 363 GVRTIIFANSRREVDNLDDFLYNMGLPVTSMHSERTQKEREAALRSFRAGQAPILIATGV 422

Query: 642 LREGLDI 648
              G+D+
Sbjct: 423 TARGIDV 429


>gi|302334111|gb|ADL24304.1| DEAD/H helicase / Type III restriction enzyme, res subunit
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 953

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  L+ GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            EG+DIPE   V +L   +   +      IQ +GR  R  ++K
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549


>gi|253734082|ref|ZP_04868247.1| helicase [Staphylococcus aureus subsp. aureus TCH130]
 gi|253727777|gb|EES96506.1| helicase [Staphylococcus aureus subsp. aureus TCH130]
          Length = 953

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  L+ GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            EG+DIPE   V +L   +   +      IQ +GR  R  ++K
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549


>gi|227889885|ref|ZP_04007690.1| helicase [Lactobacillus johnsonii ATCC 33200]
 gi|227849329|gb|EEJ59415.1| helicase [Lactobacillus johnsonii ATCC 33200]
          Length = 970

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L  L+     + AE+L E L ++ I+ + +  +     R E++ +L  GK + +V +++ 
Sbjct: 457 LHGLIFCSRNKEAEELAESLRQKGIQAKSLSGKDDVETRDEVVEELEKGKINYIVTVDIF 516

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            EG+DIP    + +L + K     S    +Q +GR  R
Sbjct: 517 NEGIDIPCINQIVLLRSTK-----SSIVFVQQLGRGLR 549


>gi|145974737|gb|ABQ00072.1| PL10A [Fenneropenaeus chinensis]
          Length = 660

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+LY     V  +H +    ER + +R  R G+  +LV   +   G
Sbjct: 501 LVFVETKKGADALEEFLYRHGYPVTSIHGDRSQREREDALRVFRSGQCPILVATAVAARG 560

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 561 LDIPHVKHVINFDLPSDIEEYVHRIGRTGRMGNLGLATSFFNDK 604


>gi|149054239|gb|EDM06056.1| similar to hypothetical protein FLJ11354 (predicted), isoform CRA_a
           [Rattus norvegicus]
 gi|149054240|gb|EDM06057.1| similar to hypothetical protein FLJ11354 (predicted), isoform CRA_a
           [Rattus norvegicus]
          Length = 374

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+I++ R GK ++LV  ++  EGLDI +C +V      + G L ++ S++Q  GRA
Sbjct: 118 EVIQEFRDGKLNLLVATSVAEEGLDIAQCNVVV-----RYGLLTNEISMVQARGRA 168


>gi|109092953|ref|XP_001085678.1| PREDICTED: eukaryotic initiation factor 4A-I-like isoform 7 [Macaca
           mulatta]
          Length = 406

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TQRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|323441629|gb|EGA99276.1| putative helicase [Staphylococcus aureus O46]
          Length = 953

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  L+ GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            EG+DIPE   V +L   +   +      IQ +GR  R  ++K
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549


>gi|300087739|ref|YP_003758261.1| transcription-repair coupling factor [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527472|gb|ADJ25940.1| transcription-repair coupling factor [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 1148

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R+A  L   + E +I+V   H ++   E  +++     G  DVLV   ++  G+DIP   
Sbjct: 827 RIANQLRNIVPEASIQV--AHGQMSERELEQVMSSFVDGDIDVLVCTTIIESGVDIPNAN 884

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            + I DADK G     T L Q  GR  R+  S
Sbjct: 885 TIIINDADKLGL----TQLYQLRGRVGRSTQS 912



 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 48/250 (19%), Positives = 109/250 (43%), Gaps = 14/250 (5%)

Query: 143 MQTDYH---PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
           M +D H   P   Q  A  +L + + S+++ QL + V  + +   +A + + + +  +++
Sbjct: 1   MNSDLHWLLPHLRQDLAYKKLYEHLSSKQQ-QLDITVLDAVRPILIAALFQEINQSLLIV 59

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
             N   A ++  +   F P   +  F  Y+++       P     I+ +  ++ +I R  
Sbjct: 60  THNHERARKIEEQLSLFVPDGQIRLF-PYFEF------APFNHEIIDID--LDNEIIRFL 110

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +      +R   I+VS  + +  + +   +S + + +  G  +  + +   L    Y+ 
Sbjct: 111 STVFGQNNDRPQVIIVSIDALVRLLPAPSDFSAISLSVFPGLDISPESICKQLDTFGYRY 170

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           ++I    GT+   G  ++IFP    D   R+  FGN+IE +  + P +    +++E   +
Sbjct: 171 ENISDTPGTYSRRGGILDIFPPG-SDAPVRLEFFGNNIETLRIYDPASQLTKKHIEFATV 229

Query: 380 YANSHYVTPR 389
              S  + P+
Sbjct: 230 GPASLILKPQ 239


>gi|148686462|gb|EDL18409.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Mus musculus]
          Length = 715

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 528 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 587

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADT 692
            GLDI     V   D        +    +  IGR  R  N+ + I + DT
Sbjct: 588 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDT 632


>gi|73966207|ref|XP_536623.2| PREDICTED: similar to eukaryotic translation initiation factor 4A,
           isoform 1 isoform 1 [Canis familiaris]
 gi|50814|emb|CAA26842.1| unnamed protein product [Mus musculus]
 gi|50819|emb|CAA26845.1| unnamed protein product [Mus musculus]
          Length = 390

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 265 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 324

Query: 651 CGLV 654
             LV
Sbjct: 325 VSLV 328


>gi|66767801|ref|YP_242563.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188990915|ref|YP_001902925.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv.
           campestris str. B100]
 gi|66573133|gb|AAY48543.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167732675|emb|CAP50869.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv.
           campestris]
          Length = 642

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA RN ++  IL+     K +  AI+
Sbjct: 311 GLDVERVSHVLNYDIPYDTESYVHR----IGRTGRAGRNGDA--ILFVTPREKGMLRAIE 364

Query: 703 ETTRRREKQLEHNKKHNIN 721
             TR+  ++++      +N
Sbjct: 365 RATRQPIEEMQLPSVDAVN 383


>gi|60683468|ref|YP_213612.1| putative primosomal protein N' [Bacteroides fragilis NCTC 9343]
 gi|265767517|ref|ZP_06095183.1| primosomal protein N [Bacteroides sp. 2_1_16]
 gi|60494902|emb|CAH09709.1| putative primosomal protein N' [Bacteroides fragilis NCTC 9343]
 gi|263252822|gb|EEZ24334.1| primosomal protein N [Bacteroides sp. 2_1_16]
          Length = 819

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  
Sbjct: 613 KIIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRSYERAFQLMAQVA 672

Query: 676 GRAAR-NVNSKVILYADTITKSI 697
           GRA R N   +V+L   +I   I
Sbjct: 673 GRAGRKNKRGRVVLQTKSIDHPI 695


>gi|49487268|ref|YP_044489.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|49245711|emb|CAG44190.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
          Length = 953

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  L+ GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            EG+DIPE   V +L   +   +      IQ +GR  R  ++K
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549


>gi|331701894|ref|YP_004398853.1| type III restriction protein res subunit [Lactobacillus buchneri
           NRRL B-30929]
 gi|329129237|gb|AEB73790.1| type III restriction protein res subunit [Lactobacillus buchneri
           NRRL B-30929]
          Length = 451

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 11/150 (7%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G R ++     + ++ +     +  I  ++  S+  + ER  I+ D R GK  VL    L
Sbjct: 216 GQRTIVYAHDTQHSKQIAAEFRKAGISAKHCDSKTPSDERKRIMSDFRKGKITVLCNFGL 275

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSL---IQTIGRAARNVNSKVILYADTITKSIQ 698
           + EG D+ EC    I         R   SL   IQ   R  R + +K+    D      +
Sbjct: 276 VDEGYDVKECTCCVI--------ARPTESLVFDIQATMRCMRYLPNKMATIIDHAANYTR 327

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEK 728
             + +T R+   +    KK   N +S+  K
Sbjct: 328 FGLPDTPRQWSLEGRPKKKRQNNTKSIPVK 357


>gi|297209690|ref|ZP_06926086.1| helicase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|296885363|gb|EFH24300.1| helicase [Staphylococcus aureus subsp. aureus ATCC 51811]
          Length = 953

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  L+ GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            EG+DIPE   V +L   +   +      IQ +GR  R  ++K
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549


>gi|308810286|ref|XP_003082452.1| putative nicotiana eukaryotic (ISS) [Ostreococcus tauri]
 gi|116060920|emb|CAL57398.1| putative nicotiana eukaryotic (ISS) [Ostreococcus tauri]
          Length = 404

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + LTE + + N  V  MH ++   ER EI+ + R
Sbjct: 263 DLYDTLTIT-----QAVIFCNTKKKVDWLTEKMRQNNFTVSAMHGDMPQKEREEIMNEFR 317

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV  ++ D  G   ++ + I  IGR+ R
Sbjct: 318 GGTTRVLITTDMWARGIDVQQVSLV--INYDLPG---NRENYIHRIGRSGR 363


>gi|110339425|gb|ABG67961.1| eukaryotic initiation factor 4A [Callinectes sapidus]
          Length = 432

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 38/64 (59%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ +++R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 307 TRRKVDWLTDKMHQRDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 366

Query: 651 CGLV 654
             LV
Sbjct: 367 VSLV 370


>gi|331089330|ref|ZP_08338231.1| hypothetical protein HMPREF1025_01814 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330405511|gb|EGG85043.1| hypothetical protein HMPREF1025_01814 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 383

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V + H ++K  E  +I+ D   G  DVLV   ++  GLDIP    + I DAD+ G     
Sbjct: 74  VAFAHGQMKERELEDIMYDFINGDIDVLVSTTIIETGLDIPNANTMIIQDADRFGL---- 129

Query: 669 TSLIQTIGRAARN 681
           + L Q  GR  R+
Sbjct: 130 SQLYQLRGRVGRS 142


>gi|302318882|ref|NP_001032894.2| ATP-dependent RNA helicase DDX42 [Danio rerio]
          Length = 908

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V  K   E+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 503 VLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVLVATDVAAR 562

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y    TK    A D
Sbjct: 563 GLDIPSIRTVVNYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTTKDTSFAGD 614


>gi|298483039|ref|ZP_07001220.1| primosomal protein N' [Bacteroides sp. D22]
 gi|298270783|gb|EFI12363.1| primosomal protein N' [Bacteroides sp. D22]
          Length = 818

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  
Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671

Query: 676 GRAAR-NVNSKVILYADTITKSI 697
           GRA R N   +V+L   +I   I
Sbjct: 672 GRAGRKNKRGRVVLQTKSIEHPI 694


>gi|291537820|emb|CBL10931.1| Superfamily II DNA and RNA helicases [Roseburia intestinalis XB6B4]
          Length = 535

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 27/199 (13%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKRM ++LTE L  R      +H ++K  +R  ++R  R GK ++L+  ++   G+D+ +
Sbjct: 258 TKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILIATDVAARGIDVDD 317

Query: 651 CGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTI-----TKSIQLAI 701
              V   D   D E ++    +T      GRA   V  K +     I     TK + + I
Sbjct: 318 VEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDIMRYCKTKIVAMPI 377

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK-- 759
             T              +   Q   EK+ME I  I+ E+     I I  +Q++ S     
Sbjct: 378 PST--------------DDVAQIKAEKVMEEIGRIIDEENLKDTIDIIEKQINESDYTAM 423

Query: 760 --GKAHLKSLRKQMHLAAD 776
               A LK    Q++L  D
Sbjct: 424 DIAAAFLKQALGQINLDND 442


>gi|255011617|ref|ZP_05283743.1| putative primosomal protein N' [Bacteroides fragilis 3_1_12]
          Length = 809

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  
Sbjct: 603 KIIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRSYERAFQLMAQVA 662

Query: 676 GRAAR-NVNSKVILYADTITKSI 697
           GRA R N   +V+L   +I   I
Sbjct: 663 GRAGRKNKRGRVVLQTKSIDHPI 685


>gi|125540426|gb|EAY86821.1| hypothetical protein OsI_08201 [Oryza sativa Indica Group]
          Length = 787

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           +D+   L  R ++   +H ++  L R  +++  + G+F VLV   L   GLD+PEC LV 
Sbjct: 659 KDVVFKLEARGMKATELHGDLGKLARSTVLKKFKDGEFRVLVTNELSARGLDVPECDLVI 718

Query: 656 ILD 658
            LD
Sbjct: 719 NLD 721


>gi|26340024|dbj|BAC33675.1| unnamed protein product [Mus musculus]
          Length = 810

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 382 VLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 441

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 442 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 493


>gi|329122093|ref|ZP_08250701.1| transcription-repair-coupling factor [Dialister micraerophilus DSM
           19965]
 gi|327466900|gb|EGF12416.1| transcription-repair-coupling factor [Dialister micraerophilus DSM
           19965]
          Length = 1132

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           M +D  E +++  +R+   +  +K  E  +++ D    K+DVL+   L+  GLD P    
Sbjct: 806 MMKDRLEKIFKGKVRIGVAYGRMKGSELEKVMFDFYQDKYDVLLCTTLIENGLDQPNANT 865

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARN 681
           + I DAD  G     + L Q  GR  R+
Sbjct: 866 IIIYDADFMGL----SQLYQMKGRVGRS 889


>gi|284802257|ref|YP_003414122.1| hypothetical protein LM5578_2013 [Listeria monocytogenes 08-5578]
 gi|284995399|ref|YP_003417167.1| hypothetical protein LM5923_1964 [Listeria monocytogenes 08-5923]
 gi|284057819|gb|ADB68760.1| hypothetical protein LM5578_2013 [Listeria monocytogenes 08-5578]
 gi|284060866|gb|ADB71805.1| hypothetical protein LM5923_1964 [Listeria monocytogenes 08-5923]
          Length = 697

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 522 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 577

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R V+ S  IL AD  T+
Sbjct: 578 HQLRGRVGRGVDQSYCILIADPKTE 602


>gi|255572248|ref|XP_002527063.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223533568|gb|EEF35307.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 650

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 34/73 (46%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L  +LY        +H +    ER + +R  R G   +LV  ++   G
Sbjct: 454 LVFVETKKGADSLEHWLYVNGFPATSIHGDRSQQEREQALRSFRSGNTPILVATDVAARG 513

Query: 646 LDIPECGLVAILD 658
           LDIP    V   D
Sbjct: 514 LDIPHVAHVVNFD 526


>gi|329897463|ref|ZP_08272106.1| Transcription-repair coupling factor [gamma proteobacterium
           IMCC3088]
 gi|328921160|gb|EGG28563.1| Transcription-repair coupling factor [gamma proteobacterium
           IMCC3088]
          Length = 1150

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 1/124 (0%)

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++V   + ++ +  ++  +   +QL IGD  +       L+   Y   D     G F + 
Sbjct: 109 LIVPVSTAMHRLPPIDYIASNALQLGIGDEFDAVAFRQQLLNAGYVAVDTVYEHGEFALR 168

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  +++FP     V +R+  F  D++ I  F P T + I  +E I +     +   +  L
Sbjct: 169 GSILDVFPMG-SSVPYRIDTFDADVDTIRTFDPETQRTIEAIERIDLLPAREFPLTKGAL 227

Query: 393 NTAM 396
           N  M
Sbjct: 228 NQFM 231


>gi|302380838|ref|ZP_07269301.1| transcription-repair coupling factor [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311333|gb|EFK93351.1| transcription-repair coupling factor [Finegoldia magna
           ACS-171-V-Col3]
          Length = 1168

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 59/289 (20%), Positives = 124/289 (42%), Gaps = 32/289 (11%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           + +P +V+  + + A  L +E+ N    N  E+F             P  +       S+
Sbjct: 49  IDKPLVVVVEDNMRARNL-TEYLNDIEENICEFF-------------PSRELNFYNAKSL 94

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ-MIVQLKIGDSVEQKELLS 310
           ++  +  R +    LL     I+V++   +    + +S ++     +K  D +  +EL  
Sbjct: 95  DDNAEDQRVNVLFKLLNNEKFIIVTTFDALTKKITKKSVAKKYAFTIKDTDLINLEELQE 154

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            L   +Y+R D    +G F + G  ++IFP H      R+ +F ++I+ +  F   T + 
Sbjct: 155 KLRVLKYERVDTIESKGQFAIRGGIVDIFPVH-SRFPVRIELFDDEIDSMRFFEVSTQRS 213

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL---IELEKEGRLLEA-QRLEQRI 426
           I + + + I + S  +       + +  I++ L  R+   I  E    + +  ++L + I
Sbjct: 214 IEDCKFVDIISCSELIIEDSKKESIINSIQKNLDKRVDHPIFGENVDNVKDKFEKLMEYI 273

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
             DLE      SC        +LT ++      T+F+Y  +DS++ +++
Sbjct: 274 RSDLEYEIDLVSC--------FLTKKD----YDTVFDYFADDSIMMIED 310


>gi|195565659|ref|XP_002106416.1| GD16140 [Drosophila simulans]
 gi|194203792|gb|EDX17368.1| GD16140 [Drosophila simulans]
          Length = 800

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I  +   G +I++ V TK   ED+ + +         +H +    ER  +++D R GK +
Sbjct: 485 IKNSGSNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSN 544

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +L+  ++   GLD+ +   V   D     +  S  + +  IGR  R
Sbjct: 545 ILIATDVASRGLDVEDLQYVINYD-----YPNSSENYVHRIGRTGR 585


>gi|156554534|ref|XP_001605420.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 775

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +  ++G + ++ V TK+  +D+T+ +         +H +    ER  ++ + R GK  +L
Sbjct: 353 IGCERGNKTIIFVETKKKVDDITKAIKRNGWPAIAIHGDKSQPERDYVLSEFRNGKTAIL 412

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLD+ +   V   D     +  S    I  IGR  R
Sbjct: 413 VATDVAARGLDVEDVKYVVNFD-----YPNSSEDYIHRIGRTGR 451


>gi|194466496|ref|ZP_03072483.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri 100-23]
 gi|194453532|gb|EDX42429.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri 100-23]
          Length = 678

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H  + T E+ E +R  + G+  VLV   ++  G+D P   ++ I DAD+ G    
Sbjct: 501 KVGLLHGRMGTEEKDEAMRQFKSGELQVLVATTVIEVGVDNPNATVMVIYDADRFGL--- 557

Query: 668 KTSLIQTIGRAAR-NVNSKVILYADTIT 694
              L Q  GR  R N  S  +L AD  T
Sbjct: 558 -AQLHQLRGRVGRGNRQSYCLLIADPKT 584


>gi|21232073|ref|NP_637990.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|21113816|gb|AAM41914.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 642

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA RN ++  IL+     K +  AI+
Sbjct: 311 GLDVERVSHVLNYDIPYDTESYVHR----IGRTGRAGRNGDA--ILFVTPREKGMLRAIE 364

Query: 703 ETTRRREKQLEHNKKHNIN 721
             TR+  ++++      +N
Sbjct: 365 RATRQPIEEMQLPSVDAVN 383


>gi|114331666|ref|YP_747888.1| primosomal protein N' [Nitrosomonas eutropha C91]
 gi|114308680|gb|ABI59923.1| replication restart DNA helicase PriA [Nitrosomonas eutropha C91]
          Length = 733

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 11/119 (9%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGF---LRSK----TSLIQTIGRAAR-NV 682
           GK D+LVG  LL +G D P   LV +L+AD   +    R++    + L+Q  GRA R ++
Sbjct: 533 GKVDILVGTQLLAKGHDFPNLALVCVLNADSSLYSTDFRAEEHLFSQLMQVAGRAGRAHI 592

Query: 683 NSKVILYADTITKSIQLAI--DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
              V++  +     + LA+   +     + QL+  K  +  P  V   ++    P+L E
Sbjct: 593 PGTVLIQTEFPQHPLYLALIRQDYAAYAQTQLKERKSASFPP-FVYLAVLRAEAPVLAE 650



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT---FTMAKVIEAMQRPAIVMAPNKIL 205
           P+ +Q  AIA++L  I +     LL G+TGSGKT     +A  + A Q+  +V+ P   L
Sbjct: 199 PTTEQAHAIAEILARIGTFTP-WLLHGITGSGKTEVYLQVAASLLAQQKQILVLVPEINL 257

Query: 206 AAQLYSEFKNFFPHNAV 222
             QL + F+  FP+  +
Sbjct: 258 TPQLEATFRKRFPNTPL 274


>gi|224036248|pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
 gi|224036250|pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
 gi|224036251|pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
 gi|224036253|pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
          Length = 388

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 263 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 322

Query: 651 CGLV 654
             LV
Sbjct: 323 VSLV 326


>gi|149173513|ref|ZP_01852143.1| ATP-dependent DNA helicase RecG [Planctomyces maris DSM 8797]
 gi|148847695|gb|EDL62028.1| ATP-dependent DNA helicase RecG [Planctomyces maris DSM 8797]
          Length = 691

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           +  +H ++   ER EI+R    G   VLV   ++  G+D+P   L+ IL AD+ G     
Sbjct: 512 IGLVHGQMDREERAEIMRQFHQGTIQVLVSTTVVEVGVDVPNATLMVILQADRFGL---- 567

Query: 669 TSLIQTIGRAARNVN 683
           + L Q  GR +R ++
Sbjct: 568 SQLHQLRGRVSRGLH 582


>gi|118582049|sp|Q0UWA6|DED1_PHANO RecName: Full=ATP-dependent RNA helicase DED1
          Length = 696

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L  +      +H +    ER + +   R G+  +LV   +   G
Sbjct: 464 LIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRSGRCPILVATAVAARG 523

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 524 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 559


>gi|325266091|ref|ZP_08132777.1| transcription-repair coupling factor [Kingella denitrificans ATCC
           33394]
 gi|324982729|gb|EGC18355.1| transcription-repair coupling factor [Kingella denitrificans ATCC
           33394]
          Length = 1258

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 82/193 (42%), Gaps = 13/193 (6%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P IV+  +   A +L + ++ F P +    F+  ++    E + P  D   E+ S + + 
Sbjct: 35  PKIVLTADSETALRLQTAWQFFRPQDNA-LFLPDWETLPYERFSPHQDLVSERLSVLWQ- 92

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
              +++ A        D +     + +  +            LK G +++  +L  +LV+
Sbjct: 93  ---LKNGAA-------DVLFAPVSTAMQRLAPPSFLMGRTFWLKTGQTLDLDKLRENLVE 142

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y      +  G F V G  +++FP    D+ +R+ +F N+I+ I  F P T + +  V
Sbjct: 143 AGYAAVSNVVAAGEFAVRGGIVDLFPMG-ADLPYRIDLFDNEIDSIKTFDPDTQRTLAPV 201

Query: 375 ETIKIYANSHYVT 387
             I++     + T
Sbjct: 202 SEIRLLPAHEFPT 214



 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 944  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1000

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 1001 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1036


>gi|312380576|gb|EFR26532.1| hypothetical protein AND_07336 [Anopheles darlingi]
          Length = 608

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 9/103 (8%)

Query: 581 QGLR--ILLTVLTKRMAEDL-TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           QGL   +L+ V +K  A+ L TE +Y+  + V  +HS+    ER  ++R  R GK  +L+
Sbjct: 386 QGLSPPVLVFVQSKDRAQQLFTELIYD-GLNVDVIHSDRSQRERDNVVRAFREGKIWILI 444

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+  G+D     LV   D     F  S  S +  IGR  R
Sbjct: 445 CTELMSRGIDFKGVNLVVNYD-----FPPSTISYVHRIGRTGR 482


>gi|298385617|ref|ZP_06995175.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
 gi|298261758|gb|EFI04624.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
          Length = 413

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 9/107 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   +++T+ L    + V  MHS+++  +R  ++ + + G+ ++LV  +++ 
Sbjct: 246 RVIIFASSKIKVKEVTKALKMMKLNVGEMHSDLEQAQREVVMHEFKAGRINILVATDIVA 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+DI +  LV   D   D E +       +  IGR AR  N  V L
Sbjct: 306 RGIDIDDIRLVINFDVPHDSEDY-------VHRIGRTARANNDGVAL 345


>gi|269218657|ref|ZP_06162511.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269211768|gb|EEZ78108.1| putative ATP-dependent DNA helicase RecG [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 706

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            I V  MH  + + E+ E +     G+  +LV   ++  G+D+PE   + ILDAD+ G  
Sbjct: 523 GIGVGTMHGRMSSDEKAEAMESFASGRAPILVSTTVVEVGVDVPEATAMVILDADRFGL- 581

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKS 696
              + L Q  GR  R     V L   +  K 
Sbjct: 582 ---SQLHQLRGRIGRGTAPGVCLAVTSAEKG 609


>gi|167764398|ref|ZP_02436523.1| hypothetical protein BACSTE_02786 [Bacteroides stercoris ATCC
           43183]
 gi|167697803|gb|EDS14382.1| hypothetical protein BACSTE_02786 [Bacteroides stercoris ATCC
           43183]
          Length = 820

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  G
Sbjct: 615 IIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRAYERAFQLMAQVAG 674

Query: 677 RAAR-NVNSKVILYADTITKSI 697
           RA R N   +V+L   +I   I
Sbjct: 675 RAGRKNKRGRVVLQTKSIEHPI 696


>gi|83589093|ref|YP_429102.1| DEAD/DEAH box helicase-like [Moorella thermoacetica ATCC 39073]
 gi|83572007|gb|ABC18559.1| DEAD/DEAH box helicase-like protein [Moorella thermoacetica ATCC
           39073]
          Length = 453

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 28/174 (16%)

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
            + E  +RP G    P      R+ V    + IN     GL++LL V    + E +  +L
Sbjct: 281 FVREPFLRPPGTGPLP------RSMV----NCINTTLGAGLQLLLFVPAVSLVEGVAAWL 330

Query: 603 YER-------NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
            +           VR  H+      R E+I   R G+F VLV   ++  G+ IP    V 
Sbjct: 331 LDSWPGQAPGGAWVRGCHAAHP--RREEVIAAFRRGEFPVLVTTTVMERGVTIPRLN-VL 387

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNV---NSKVILYADTITKSIQLAIDETTR 706
           +L A+ EG + + ++L+Q  GRA R+      +V      I + +  AI E  R
Sbjct: 388 VLYAE-EGRVFTASTLVQIAGRAGRSAAYPTGRVWF----IGRHLSPAIAEAAR 436


>gi|73969105|ref|XP_860607.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 10 [Canis
           familiaris]
          Length = 655

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 339 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 398

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 399 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 452

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 453 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 479


>gi|59800577|ref|YP_207289.1| hypothetical protein NGO0117 [Neisseria gonorrhoeae FA 1090]
 gi|194097746|ref|YP_002000787.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae NCCP11945]
 gi|239998249|ref|ZP_04718173.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 35/02]
 gi|240015874|ref|ZP_04722414.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae FA6140]
 gi|240114966|ref|ZP_04729028.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID18]
 gi|240117250|ref|ZP_04731312.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID1]
 gi|240124998|ref|ZP_04737884.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-92-679]
 gi|260441218|ref|ZP_05795034.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae DGI2]
 gi|268594104|ref|ZP_06128271.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 35/02]
 gi|268600632|ref|ZP_06134799.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID18]
 gi|268602945|ref|ZP_06137112.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID1]
 gi|268683583|ref|ZP_06150445.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-92-679]
 gi|291044555|ref|ZP_06570264.1| ATP-dependent DNA helicase recG [Neisseria gonorrhoeae DGI2]
 gi|59717472|gb|AAW88877.1| putative DNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|193933036|gb|ACF28860.1| RecG [Neisseria gonorrhoeae NCCP11945]
 gi|268547493|gb|EEZ42911.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 35/02]
 gi|268584763|gb|EEZ49439.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID18]
 gi|268587076|gb|EEZ51752.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID1]
 gi|268623867|gb|EEZ56267.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-92-679]
 gi|291011449|gb|EFE03445.1| ATP-dependent DNA helicase recG [Neisseria gonorrhoeae DGI2]
 gi|317163533|gb|ADV07074.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 680

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++ +   G+ +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPEPNIGL--VHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAGESVCVLLFAEPL 589


>gi|85060202|ref|YP_455904.1| ATP-dependent DNA helicase RecG [Sodalis glossinidius str.
           'morsitans']
 gi|84780722|dbj|BAE75499.1| ATP-dependent DNA helicase [Sodalis glossinidius str. 'morsitans']
          Length = 694

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 6/94 (6%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           +RV  +H  +K LE+ ++++  + G   +LV   ++  G+D+P   L+ I + ++ G   
Sbjct: 519 LRVGLVHGRMKALEKQQLMQAFKAGDVQLLVATTVIEVGVDVPNASLMIIENPERLGL-- 576

Query: 667 SKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
               L Q  GR  R   +   V+LY   ++K+ Q
Sbjct: 577 --AQLHQLRGRVGRGAVASHCVLLYKSPLSKTAQ 608


>gi|329116940|ref|ZP_08245657.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis
           NCFD 2020]
 gi|326907345|gb|EGE54259.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis
           NCFD 2020]
          Length = 537

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI +
Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILVATDVAARGLDISD 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              V   D       +   S +  IGR  R
Sbjct: 308 VTHVYNYD-----ITQDPESYVHRIGRTGR 332


>gi|304384760|ref|ZP_07367106.1| DNA helicase RecG [Pediococcus acidilactici DSM 20284]
 gi|304328954|gb|EFL96174.1| DNA helicase RecG [Pediococcus acidilactici DSM 20284]
          Length = 675

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L ++  +R   +  +H ++   E+ +I+ D + GK+  LV   ++  G+D+P   L+ 
Sbjct: 486 EELKDFFGQR-YAIGILHGKMDGAEKDQIMADFKAGKYAGLVSTTVIEVGVDVPNATLMV 544

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN 681
           I DAD+ G       L Q  GR  R 
Sbjct: 545 IQDADRFGL----AQLHQLRGRIGRG 566


>gi|281339672|gb|EFB15256.1| hypothetical protein PANDA_009266 [Ailuropoda melanoleuca]
          Length = 1917

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GR AR   S  I+ ADT
Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566


>gi|253744188|gb|EET00428.1| ATP-dependent RNA helicase [Giardia intestinalis ATCC 50581]
          Length = 900

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V TK   E LT  L   N+R   ++  +   +R   + D   G++++L+  ++  
Sbjct: 300 KLLVFVATKHHCEYLTSILQANNLRATCIYGSLDQRQRTIALSDFDKGRYNILISTDVAA 359

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DIP    V   +     F  S  + +  +GR+AR
Sbjct: 360 RGIDIPSLDCVINYN-----FPSSGKNYVHRVGRSAR 391


>gi|227890267|ref|ZP_04008072.1| DNA helicase RecG [Lactobacillus johnsonii ATCC 33200]
 gi|227849081|gb|EEJ59167.1| DNA helicase RecG [Lactobacillus johnsonii ATCC 33200]
          Length = 679

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 6/89 (6%)

Query: 595 AEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           AEDL   +  Y ++  V  +H ++K  ++ EI+     GK ++LV  +++  G+D+P   
Sbjct: 488 AEDLQAKIAHYFKDENVVLLHGQMKGDQKNEIMDSFAAGKINILVTTSVIEVGVDVPNAN 547

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
           ++ I +AD+ G     + L Q  GR  R 
Sbjct: 548 MMVIFNADRFGL----SQLHQLRGRIGRG 572


>gi|225424226|ref|XP_002280664.1| PREDICTED: similar to ATP-dependent helicase [Vitis vinifera]
          Length = 1272

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 23/165 (13%)

Query: 558  PVE---IRSARTQVEDVY----DEINLAAQQGLRILLTVLTK-------RMAEDLTEYLY 603
            PVE   I       EDVY    DE+ +  +  + I+  V+ +       R A    E + 
Sbjct: 1033 PVETYTIEGCDAGFEDVYQMMLDELEVGGK--IYIVYPVIEQSEQLPQLRAASTDLETIS 1090

Query: 604  ER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
             R    +   +H  +K+ E+ E +R  R G+ ++L+   ++  G+D+P+  ++ +++A++
Sbjct: 1091 SRFQGYKCGLLHGRMKSDEKDEALRRFRSGETNILLSTQVIEIGVDVPDASMMVVMNAER 1150

Query: 662  EGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAIDETT 705
             G       L Q  GR  R V  SK +L + T +   +L + E +
Sbjct: 1151 FGI----AQLHQLRGRVGRGVRKSKCLLVSSTASGLNRLKVLENS 1191


>gi|167534955|ref|XP_001749152.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772305|gb|EDQ85958.1| predicted protein [Monosiga brevicollis MX1]
          Length = 543

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           Q GL+  +L+ V +K  A+ L E L   N+ V  +H++    +R E+++  R G+  VL+
Sbjct: 343 QTGLQPPVLIFVQSKSRAQQLFEELVYENVNVDVIHADRTQQQRDEVVKRFREGQVWVLI 402

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +L+  G+D     +V   D     F  + T  I  +GR  R
Sbjct: 403 CTDLMGRGVDFKAVNVVINYD-----FPPNATEYIHRVGRTGR 440


>gi|328947735|ref|YP_004365072.1| UvrABC system protein C [Treponema succinifaciens DSM 2489]
 gi|328448059|gb|AEB13775.1| UvrABC system protein C [Treponema succinifaciens DSM 2489]
          Length = 655

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 29/40 (72%)

Query: 754 SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           SL + KG+  +K L+ QM  AA NLNFE+AAR+RD IK L
Sbjct: 204 SLLEGKGEETVKKLQGQMKEAAKNLNFEKAARLRDGIKAL 243


>gi|312085225|ref|XP_003144594.1| hypothetical protein LOAG_09017 [Loa loa]
 gi|307760242|gb|EFO19476.1| hypothetical protein LOAG_09017 [Loa loa]
          Length = 802

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A DL  YL +    V  +H ++K  +R + +   R G   +LV   +   G
Sbjct: 607 LVFVETKRGASDLAYYLQKDGYNVVAIHGDLKQFDREKHLETFRSGVAPILVATAVAARG 666

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D  +D + ++    +T  +  +G A    N K
Sbjct: 667 LDIPNVKHVINYDLPSDIDEYVHRIGRTGRVGNVGLATSFFNDK 710


>gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
 gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
          Length = 509

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++   L ER      +H ++   +R+ ++R+ + GK D+LV  ++   GLDI  
Sbjct: 247 TKRRVDEVARGLVERGYSAEGIHGDLSQDKRLGVLRNFKNGKLDILVATDVAARGLDI-- 304

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 305 SGVTHVYNFD---IPQDPESYVHRIGRTGR 331


>gi|262401079|gb|ACY66442.1| eukaryotic initiation factor 4A [Scylla paramamosain]
          Length = 140

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ +++R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 15  TRRKVDWLTDKMHQRDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 74

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D   ++E ++
Sbjct: 75  VSLVINYDLPTNRENYI 91


>gi|257413647|ref|ZP_04743689.2| ATP-dependent RNA helicase, DEAD/DEAH family [Roseburia
           intestinalis L1-82]
 gi|257202759|gb|EEV01044.1| ATP-dependent RNA helicase, DEAD/DEAH family [Roseburia
           intestinalis L1-82]
          Length = 553

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 27/199 (13%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKRM ++LTE L  R      +H ++K  +R  ++R  R GK ++L+  ++   G+D+ +
Sbjct: 276 TKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILIATDVAARGIDVDD 335

Query: 651 CGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTI-----TKSIQLAI 701
              V   D   D E ++    +T      GRA   V  K +     I     TK + + I
Sbjct: 336 VEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDIMRYCKTKIVAMPI 395

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK-- 759
             T              +   Q   EK+ME I  I+ E+     I I  +Q++ S     
Sbjct: 396 PST--------------DDVAQIKAEKVMEEIGRIIDEENLKDTIDIIEKQINESDYTAM 441

Query: 760 --GKAHLKSLRKQMHLAAD 776
               A LK    Q++L  D
Sbjct: 442 DIAAAFLKQALGQINLDND 460


>gi|220678758|emb|CAX13889.1| novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 43 (DDX43) [Danio rerio]
 gi|220678952|emb|CAX13571.1| novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 43 (DDX43) [Danio rerio]
          Length = 719

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V  K  A+DL+  L  + I V+ +H + +  +R E ++D + G+  +LV  +L  
Sbjct: 525 KVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRILVATDLAS 584

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +  +  + + D   F R+    +  +GR  R
Sbjct: 585 RGLDVHD--ITHVFNYD---FPRNVEEYVHRVGRTGR 616


>gi|195331135|ref|XP_002032258.1| GM23619 [Drosophila sechellia]
 gi|194121201|gb|EDW43244.1| GM23619 [Drosophila sechellia]
          Length = 2249

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 9/81 (11%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 553 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 607

Query: 683 NSKVIL----YADTITKSIQL 699
              VIL    Y     +S+QL
Sbjct: 608 AYHVILVAPSYKSPTVESVQL 628


>gi|90581395|ref|ZP_01237190.1| putative ATP-dependent DNA helicase RecG [Vibrio angustum S14]
 gi|90437372|gb|EAS62568.1| putative ATP-dependent DNA helicase RecG [Vibrio angustum S14]
          Length = 693

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 8/106 (7%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A++LT  L   ++++  +H  +K  E+  ++   + G+ D+LV   ++  G+D+P   L+
Sbjct: 508 ADELTGLL--PDLKIGLVHGRMKAAEKQAVMASFKAGELDLLVATTVIEVGVDVPNASLM 565

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKSIQ 698
            I + ++ G       L Q  GR  R    +  V+LY   ++K+ Q
Sbjct: 566 VIENPERLGL----AQLHQLRGRVGRGKVASHCVLLYHAPLSKTAQ 607


>gi|158312984|ref|YP_001505492.1| DEAD/DEAH box helicase domain-containing protein [Frankia sp.
           EAN1pec]
 gi|158108389|gb|ABW10586.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec]
          Length = 781

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  + +  R EI+     G+ DVLV   ++  G+D+P   ++ I+DAD  G  
Sbjct: 597 GLRVEGLHGRLPSPVRDEIMTRFAAGEVDVLVATTVIEVGVDVPNATVMIIMDADWFGV- 655

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
              + L Q  GR  R     V L   ++  ++  A
Sbjct: 656 ---SQLHQLRGRVGRGSAPGVCLLHTSVDGAVPAA 687


>gi|333030152|ref|ZP_08458213.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
 gi|332740749|gb|EGJ71231.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
          Length = 404

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 10/110 (9%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+   +K   +++   L + +++V  +HS++    R E++++ + G  D+LVG +++  G
Sbjct: 248 LVFASSKAKVKEVARALKKMDLKVGEIHSDLNQKTREEMLQNFKAGNIDILVGTDIIARG 307

Query: 646 LDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
           +D+ +  LV   D   D E +       +  IGR AR  N  V I + +T
Sbjct: 308 IDVDDIRLVINYDVPNDSEDY-------VHRIGRTARANNDGVAITFVNT 350


>gi|319947517|ref|ZP_08021749.1| helicase [Streptococcus australis ATCC 700641]
 gi|319746457|gb|EFV98718.1| helicase [Streptococcus australis ATCC 700641]
          Length = 975

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 7/125 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRI--LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  +V+ +  +I+     G ++  L+   +K+ A +L   L ++  R R +  E     
Sbjct: 430 TSEERVKHIIKKIDFYGVSGEKVKGLMFCSSKQEAHELASKLNQKGKRCRALTGEDNMET 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E++  L  G+ D ++ +++  EG+DIP    V +L        +S    +Q +GR  R
Sbjct: 490 RNEVVAQLEKGELDYILTVDIFNEGIDIPSVNQVVMLRNT-----QSSIVFVQQLGRGLR 544

Query: 681 NVNSK 685
              SK
Sbjct: 545 KHESK 549


>gi|309812806|ref|ZP_07706544.1| transcription-repair coupling factor [Dermacoccus sp. Ellin185]
 gi|308433223|gb|EFP57117.1| transcription-repair coupling factor [Dermacoccus sp. Ellin185]
          Length = 1209

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 12/106 (11%)

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G+G +E      V L  GD    ++++ +LV   Y R D+   RG F V G  +++FP  
Sbjct: 148 GLGDLEP-----VSLAAGDERPLEDIVEALVAAAYTRVDMVERRGEFAVRGGILDVFPP- 201

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
            ED   R+  +G+ +EEI  F      K+ +  ++++  +  +  P
Sbjct: 202 TEDHPVRLEFWGDTVEEIRWF------KVADQRSLEVNPHGLWAPP 241


>gi|294102390|ref|YP_003554248.1| ATP-dependent DNA helicase RecG [Aminobacterium colombiense DSM
           12261]
 gi|293617370|gb|ADE57524.1| ATP-dependent DNA helicase RecG [Aminobacterium colombiense DSM
           12261]
          Length = 695

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 5/91 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++ V  +H ++ + E+  I+R    G  D++V   ++  G+D+P+  ++ I DAD+ G  
Sbjct: 514 DLNVGLLHGQLPSSEKETIMRSFARGHLDLIVSTTVIEVGVDVPQATVMVIEDADRFGL- 572

Query: 666 RSKTSLIQTIGRAARNVN-SKVILYADTITK 695
              + L Q  GR  R  N S  +L ++  T+
Sbjct: 573 ---SQLHQLRGRVGRGGNQSYCVLLSNPTTR 600


>gi|270290362|ref|ZP_06196587.1| ATP-dependent DNA helicase RecG [Pediococcus acidilactici 7_4]
 gi|270281143|gb|EFA26976.1| ATP-dependent DNA helicase RecG [Pediococcus acidilactici 7_4]
          Length = 675

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L ++  +R   +  +H ++   E+ +I+ D + GK+  LV   ++  G+D+P   L+ 
Sbjct: 486 EELKDFFGQR-YAIGILHGKMDGAEKDQIMADFKAGKYAGLVSTTVIEVGVDVPNATLMV 544

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN 681
           I DAD+ G       L Q  GR  R 
Sbjct: 545 IQDADRFGL----AQLHQLRGRIGRG 566


>gi|27463689|gb|AAO15914.1|AF510054_1 vasa-like [Schistocerca gregaria]
          Length = 588

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  + G ++L+ V TKR+A+ L  +L E+      +H +    +R E + D + G+  +L
Sbjct: 413 LREEGGKKVLVFVETKRIADFLAAFLCEQKFPTTSIHGDRLQSQREEALYDFKSGRMGIL 472

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           V   +   GLDI     V   D  K     S    +  IGR  R  N
Sbjct: 473 VATAVAARGLDIKNVAHVINYDLPK-----SIDEYVHRIGRTGRVGN 514


>gi|324113535|gb|EGC07510.1| transcription-repair coupling protein [Escherichia fergusonii B253]
          Length = 1148

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 128/309 (41%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G           + +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 G---------HALMMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
             D+ +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 -SDLPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +    E+++     +A+ + Q++        + G+  +   Y + L      EP P LF
Sbjct: 231 WR-DTFEVKR-----DAEHIYQQV--------SKGTLPAGIEYWQPLFF---SEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|317498522|ref|ZP_07956816.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316894215|gb|EFV16403.1| ATP-dependent DNA helicase RecG [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 676

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+ Y+H ++K  ++ +++ D   GK DVLV   ++  G+++P   ++ + +A++ G  
Sbjct: 501 SVRISYLHGKMKAADKQKVMDDFSEGKIDVLVSTTVVEVGVNVPNATVMMVENAERFGL- 559

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R 
Sbjct: 560 ---AQLHQLRGRVGRG 572


>gi|301770225|ref|XP_002920522.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like
           [Ailuropoda melanoleuca]
          Length = 1931

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GR AR   S  I+ ADT
Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566


>gi|237717374|ref|ZP_04547855.1| primosomal protein N [Bacteroides sp. D1]
 gi|262406139|ref|ZP_06082689.1| primosomal protein N [Bacteroides sp. 2_1_22]
 gi|294644034|ref|ZP_06721811.1| primosomal protein N' [Bacteroides ovatus SD CC 2a]
 gi|294810186|ref|ZP_06768853.1| primosomal protein N' [Bacteroides xylanisolvens SD CC 1b]
 gi|229443357|gb|EEO49148.1| primosomal protein N [Bacteroides sp. D1]
 gi|262357014|gb|EEZ06104.1| primosomal protein N [Bacteroides sp. 2_1_22]
 gi|292640558|gb|EFF58799.1| primosomal protein N' [Bacteroides ovatus SD CC 2a]
 gi|294442598|gb|EFG11398.1| primosomal protein N' [Bacteroides xylanisolvens SD CC 1b]
          Length = 818

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  
Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671

Query: 676 GRAAR-NVNSKVILYADTITKSI 697
           GRA R N   +V+L   +I   I
Sbjct: 672 GRAGRKNKRGRVVLQTKSIEHPI 694


>gi|308234564|ref|ZP_07665301.1| ATP-dependent DNA helicase RecG [Atopobium vaginae DSM 15829]
 gi|328944162|ref|ZP_08241627.1| DNA helicase RecG [Atopobium vaginae DSM 15829]
 gi|327492131|gb|EGF23905.1| DNA helicase RecG [Atopobium vaginae DSM 15829]
          Length = 749

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 23/165 (13%)

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI---RVR 610
           ++ P ++ + ART V+D+      +AQ          T   A+   E L   +    R+ 
Sbjct: 518 IICPLIDNQDARTTVDDIAPNAQSSAQ----------TLHSAQQTFESLKRSSFSAYRIG 567

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +   + + E+  ++   R  K DVLV   ++  G+D+P    + ILDAD+ G      +
Sbjct: 568 LLTGRMDSDEKDRVMSQFRAHKLDVLVATTIVEVGVDVPRACAMIILDADRFGL----AT 623

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           L Q  GR  R   +  + Y  T +K   LA     RRR   LE+ 
Sbjct: 624 LHQLRGRVGRGSLAAQV-YLVTASKKHSLA-----RRRLDILENT 662


>gi|167860961|gb|ACA05234.1| vasa-like protein [Apostichopus japonicus]
          Length = 530

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+   TKR A+ L  YL +       +H + +  ER E + D +  +  VLV  ++  
Sbjct: 324 RTLVFTETKRGADFLASYLSQSGFPTTSIHGDREQREREEALNDFKRNRASVLVATSVAS 383

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
            GLDIP    V   D   E         +  IGR  R  N+ +
Sbjct: 384 RGLDIPAVKHVVNFDLPSE-----IDDYVHRIGRTGRCGNTGL 421


>gi|167765566|ref|ZP_02437630.1| hypothetical protein CLOSS21_00060 [Clostridium sp. SS2/1]
 gi|167712751|gb|EDS23330.1| hypothetical protein CLOSS21_00060 [Clostridium sp. SS2/1]
 gi|291559032|emb|CBL37832.1| ATP-dependent DNA helicase RecG [butyrate-producing bacterium
           SSC/2]
          Length = 676

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+ Y+H ++K  ++ +++ D   GK DVLV   ++  G+++P   ++ + +A++ G  
Sbjct: 501 SVRISYLHGKMKAADKQKVMDDFSEGKIDVLVSTTVVEVGVNVPNATVMMVENAERFGL- 559

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R 
Sbjct: 560 ---AQLHQLRGRVGRG 572


>gi|123325507|gb|ABM74410.1| vasa protein [Botrylloides violaceus]
          Length = 630

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A+   R L+ V TKR A+ L  +L +  +    +H + +  ER   + D + G+  +L+ 
Sbjct: 452 AETAARTLVFVDTKRNADFLATFLSQEGLPTTSIHGDRQQRERETALLDFKNGRCPILIA 511

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYAD 691
            ++   GLDIP+   V   D   +         +  IGR  R  N+ S    Y+D
Sbjct: 512 TSVAARGLDIPKVEHVINYDLPSD-----IDEYVHRIGRTGRCGNLGSATSFYSD 561


>gi|114669836|ref|XP_001147439.1| PREDICTED: DEAD box polypeptide 42 protein isoform 2 [Pan
           troglodytes]
 gi|114669838|ref|XP_001147515.1| PREDICTED: DEAD box polypeptide 42 protein isoform 3 [Pan
           troglodytes]
          Length = 674

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 237 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 296

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 297 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 348


>gi|114654613|ref|XP_001154199.1| PREDICTED: dicer1 isoform 3 [Pan troglodytes]
 gi|114654615|ref|XP_001154247.1| PREDICTED: dicer1 isoform 4 [Pan troglodytes]
 gi|114654617|ref|XP_001154306.1| PREDICTED: dicer1 isoform 5 [Pan troglodytes]
 gi|114654619|ref|XP_001154369.1| PREDICTED: endoribonuclease Dicer isoform 6 [Pan troglodytes]
          Length = 1922

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GR AR   S  I+ ADT
Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566


>gi|98986202|dbj|BAE94497.1| Vasa [Polyandrocarpa misakiensis]
          Length = 705

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TKR A+ L  +L + N+    +H +    ER   + D + G   +++  ++  
Sbjct: 501 RTLVFVETKRKADFLAAFLSQENLPTTSIHGDRYQREREMALADFKSGTCPIMIATSVAA 560

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYAD 691
            GLDIP+   V   D   E         +  +GR  R  N+      Y+D
Sbjct: 561 RGLDIPKVEHVINFDLPNE-----IDEFVHRVGRTGRCGNLGQATSFYSD 605


>gi|42519402|ref|NP_965332.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii NCC 533]
 gi|41583690|gb|AAS09298.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii NCC 533]
          Length = 679

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 6/89 (6%)

Query: 595 AEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           AEDL   +  Y ++  V  +H ++K  ++ EI+     GK ++LV  +++  G+D+P   
Sbjct: 488 AEDLQAKIAHYFKDENVVLLHGQMKGDQKNEIMDSFAAGKINILVTTSVIEVGVDVPNAN 547

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
           ++ I +AD+ G     + L Q  GR  R 
Sbjct: 548 MMVIFNADRFGL----SQLHQLRGRIGRG 572


>gi|26988872|ref|NP_744297.1| transcription-repair coupling factor [Pseudomonas putida KT2440]
 gi|24983679|gb|AAN67761.1|AE016407_5 transcription-repair coupling factor [Pseudomonas putida KT2440]
          Length = 1149

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 89/208 (42%), Gaps = 21/208 (10%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   +  R  +++  +   A +L  E + F P   V  F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +       
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELSHG----------ILVVPITTALHRLAPTRFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G +++ +++   L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMG-SKLPYRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKI 379
           +F N+IE +  F P T + I  V+++++
Sbjct: 184 LFDNEIETLRTFDPETQRSIDKVDSVRL 211



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VLV   ++  G+D+P  
Sbjct: 825 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSA 882

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             + I  ADK G       L Q  GR  R+ +     YA  +T + Q    +  +R E
Sbjct: 883 NTIVIERADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPTRQKVSADAEKRLE 933


>gi|310641357|ref|YP_003946115.1| dead/deah box helicase domain-containing protein [Paenibacillus
           polymyxa SC2]
 gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
           polymyxa SC2]
          Length = 525

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L +R      +H ++   +R  ++R  R G  DVLV  ++   GLD+  
Sbjct: 249 TKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVAARGLDV-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  +++ D     +   S +  IGR  R
Sbjct: 307 SGVTHVVNFD---LPQDPESYVHRIGRTGR 333


>gi|260642551|ref|ZP_05416333.2| primosomal protein [Bacteroides finegoldii DSM 17565]
 gi|260621597|gb|EEX44468.1| primosomal protein [Bacteroides finegoldii DSM 17565]
          Length = 818

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  
Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671

Query: 676 GRAAR-NVNSKVILYADTITKSI 697
           GRA R N   +V+L   +I   I
Sbjct: 672 GRAGRKNKRGRVVLQTKSIEHPI 694


>gi|242810274|ref|XP_002485548.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218716173|gb|EED15595.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 667

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTE   +  I  RY+ +      R E +   + G++ VL+   L  EG DIP    V + 
Sbjct: 319 LTEAFRDNGIDARYITANTPRQTRNEELEAFKRGEYPVLLNCGLFTEGTDIPNIDCVVLA 378

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
                   RSK+ LIQ IGR  R
Sbjct: 379 RP-----TRSKSLLIQMIGRGLR 396


>gi|73963940|ref|XP_537547.2| PREDICTED: similar to dicer1 isoform 1 [Canis familiaris]
          Length = 1923

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GR AR   S  I+ ADT
Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566


>gi|332223646|ref|XP_003260983.1| PREDICTED: endoribonuclease Dicer isoform 1 [Nomascus leucogenys]
 gi|332223648|ref|XP_003260984.1| PREDICTED: endoribonuclease Dicer isoform 2 [Nomascus leucogenys]
          Length = 1922

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GR AR   S  I+ ADT
Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566


>gi|329667073|gb|AEB93021.1| ATP-dependent DNA helicase RecG [Lactobacillus johnsonii DPC 6026]
          Length = 679

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 6/89 (6%)

Query: 595 AEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           AEDL   +  Y ++  V  +H ++K  ++ EI+     GK ++LV  +++  G+D+P   
Sbjct: 488 AEDLQAKIAHYFKDENVVLLHGQMKGDQKNEIMDSFAAGKINILVTTSVIEVGVDVPNAN 547

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
           ++ I +AD+ G     + L Q  GR  R 
Sbjct: 548 MMVIFNADRFGL----SQLHQLRGRIGRG 572


>gi|313149452|ref|ZP_07811645.1| primosomal protein N [Bacteroides fragilis 3_1_12]
 gi|313138219|gb|EFR55579.1| primosomal protein N [Bacteroides fragilis 3_1_12]
          Length = 819

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  
Sbjct: 613 KIIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRSYERAFQLMAQVA 672

Query: 676 GRAAR-NVNSKVILYADTITKSI 697
           GRA R N   +V+L   +I   I
Sbjct: 673 GRAGRKNKRGRVVLQTKSIDHPI 695


>gi|298245570|ref|ZP_06969376.1| ATP-dependent DNA helicase RecG [Ktedonobacter racemifer DSM 44963]
 gi|297553051|gb|EFH86916.1| ATP-dependent DNA helicase RecG [Ktedonobacter racemifer DSM 44963]
          Length = 913

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  +K  E+ +++   R  K D+LV  +++  G+D+P   ++ I DAD+ G  
Sbjct: 735 TLRLGLLHGAMKPAEKDQVMHRFRDHKLDILVATSVIEVGIDVPNATVMVIEDADRFGL- 793

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R 
Sbjct: 794 ---SQLHQFRGRVGRG 806


>gi|258424971|ref|ZP_05687842.1| helicase [Staphylococcus aureus A9635]
 gi|257844805|gb|EEV68848.1| helicase [Staphylococcus aureus A9635]
          Length = 953

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  L+ GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            EG+DIPE   V +L   +   +      IQ +GR  R  ++K
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLRKSSNK 549


>gi|254993542|ref|ZP_05275732.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J2-064]
          Length = 259

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 84  MHGKLLPADKEQIMRDFNNKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 139

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  N S  IL AD  T+
Sbjct: 140 HQLRGRVGRGANQSYCILIADPKTE 164


>gi|126653480|ref|ZP_01725573.1| hypothetical protein BB14905_23188 [Bacillus sp. B14905]
 gi|126589758|gb|EAZ83892.1| hypothetical protein BB14905_23188 [Bacillus sp. B14905]
          Length = 182

 Score = 43.5 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 29/45 (64%)

Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           K  ++ +RK+M  A D   FEEAA++RDE+K L+    F+G D S
Sbjct: 138 KKQIEDIRKRMKFAVDEEQFEEAAKLRDEVKELEKQLQFEGGDVS 182


>gi|119177270|ref|XP_001240430.1| conserved hypothetical protein [Coccidioides immitis RS]
 gi|303316075|ref|XP_003068042.1| Eukaryotic translation initiation factor 4A, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|118593421|sp|Q1DQ20|IF4A_COCIM RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|240107718|gb|EER25897.1| Eukaryotic translation initiation factor 4A, putative [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 398

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH E++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 273 TRRKVDWLTDKLIARDFTVSAMHGEMEQNQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 332

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 333 VSLVINYDLPANRENYI 349


>gi|163845859|ref|YP_001633903.1| ATP-dependent DNA helicase RecG [Chloroflexus aurantiacus J-10-fl]
 gi|222523571|ref|YP_002568041.1| ATP-dependent DNA helicase RecG [Chloroflexus sp. Y-400-fl]
 gi|163667148|gb|ABY33514.1| ATP-dependent DNA helicase RecG [Chloroflexus aurantiacus J-10-fl]
 gi|222447450|gb|ACM51716.1| ATP-dependent DNA helicase RecG [Chloroflexus sp. Y-400-fl]
          Length = 872

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 16/143 (11%)

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL----TEYLYER-------NIRVR 610
           R  R +   VY  I     +G ++ +       +E L     E +YER       ++RV 
Sbjct: 638 RVGRAERAKVYRHIRKQVAEGRQVYVICPLVEESEKLDLPSAEEMYERLQHEVFPDLRVA 697

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H ++   E+ +++R  R  ++D+LV   ++  G+D+P    + I  A++ G       
Sbjct: 698 LLHGKLSAREKDDVMRAFRDHQYDILVATAVIEVGIDVPNATTIVIEGAERFGL----AQ 753

Query: 671 LIQTIGRAARNVN-SKVILYADT 692
           L Q  GR  R  + S  IL +D+
Sbjct: 754 LHQFRGRVGRGHHQSYCILISDS 776


>gi|325128294|gb|EGC51178.1| transcription-repair coupling factor [Neisseria meningitidis N1568]
          Length = 1305

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 88/208 (42%), Gaps = 17/208 (8%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  +   A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ +   
Sbjct: 37  VVLTQDAEQALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ--- 92

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            ++  A        D + V   + +  +  V   +     LK G +++   L + LV   
Sbjct: 93  -IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAG 144

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  
Sbjct: 145 YNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVSE 203

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELK 404
           I++     +    PT + A K  +   +
Sbjct: 204 IRLLPAHEF----PTDSEAQKIFRSRFR 227



 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 996  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1052

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 1053 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1088


>gi|320032406|gb|EFW14359.1| ATP-dependent RNA helicase eIF4A [Coccidioides posadasii str.
           Silveira]
          Length = 382

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH E++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 257 TRRKVDWLTDKLIARDFTVSAMHGEMEQNQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 316

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 317 VSLVINYDLPANRENYI 333


>gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa
           E681]
 gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
           polymyxa E681]
          Length = 529

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L +R      +H ++   +R  ++R  R G  DVLV  ++   GLD+  
Sbjct: 249 TKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVAARGLDV-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  +++ D     +   S +  IGR  R
Sbjct: 307 SGVTHVVNFD---LPQDPESYVHRIGRTGR 333


>gi|296215831|ref|XP_002754304.1| PREDICTED: endoribonuclease Dicer isoform 1 [Callithrix jacchus]
 gi|296215833|ref|XP_002754305.1| PREDICTED: endoribonuclease Dicer isoform 2 [Callithrix jacchus]
 gi|296215835|ref|XP_002754306.1| PREDICTED: endoribonuclease Dicer isoform 3 [Callithrix jacchus]
          Length = 1922

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GR AR   S  I+ ADT
Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566


>gi|291537686|emb|CBL10798.1| Superfamily II DNA and RNA helicases [Roseburia intestinalis M50/1]
          Length = 530

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 27/199 (13%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKRM ++LTE L  R      +H ++K  +R  ++R  R GK ++L+  ++   G+D+ +
Sbjct: 253 TKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILIATDVAARGIDVDD 312

Query: 651 CGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTI-----TKSIQLAI 701
              V   D   D E ++    +T      GRA   V  K +     I     TK + + I
Sbjct: 313 VEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDIMRYCKTKIVAMPI 372

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK-- 759
             T              +   Q   EK+ME I  I+ E+     I I  +Q++ S     
Sbjct: 373 PST--------------DDVAQIKAEKVMEEIGRIIDEENLKDTIDIIEKQINESDYTAM 418

Query: 760 --GKAHLKSLRKQMHLAAD 776
               A LK    Q++L  D
Sbjct: 419 DIAAAFLKQALGQINLDND 437


>gi|257386865|ref|YP_003176638.1| Hef nuclease [Halomicrobium mukohataei DSM 12286]
 gi|257169172|gb|ACV46931.1| helicase domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 851

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 12/120 (10%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-HSEVKTLERI------EIIRDL 628
            L  + G R+++   ++  AE LT++L +     +++  S+ +  E +      E +   
Sbjct: 370 TLGIENGERVIVFTESRDTAETLTDFLSDHFETEKFVGQSDTEGSEGMTQTQQQETLDRF 429

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G+F+VLV  ++  EGLD+PE  LV   +      + +    IQ  GR  R    +V++
Sbjct: 430 RAGEFEVLVSTSVAEEGLDVPEVDLVLFYEP-----VPTAIRSIQRKGRTGRQTEGRVVV 484


>gi|121711547|ref|XP_001273389.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1]
 gi|119401540|gb|EAW11963.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1]
          Length = 539

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGL 653
           ++LTE      I  RY+ ++     R+E +R  R  ++ VL+   L  EG DIP  +C L
Sbjct: 174 KELTETFRNYGIDARYITAKTSREARMEQLRAFRDREYPVLLNCGLFTEGTDIPNIDCVL 233

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR 680
           +A          RS+  LIQ IGR  R
Sbjct: 234 LARP-------TRSRNLLIQMIGRGLR 253


>gi|11602713|emb|CAC18543.1| translation initiation factor 4A-like protein [Echinococcus
           multilocularis]
          Length = 403

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +        ++   T+R AE L + + + N  V  MH ++   ER EI+R+ R
Sbjct: 262 DLYDTLTVTQS-----VIFCNTRRKAEWLADKMCKSNFTVTVMHGDMVQKEREEIMRNFR 316

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +  VL+  +LL  G+D+ +  +V        G   ++   I  IGR+ R
Sbjct: 317 SSESRVLITTDLLARGIDVQQVSMVI-----NYGLPNNRELYIHRIGRSGR 362


>gi|62857657|ref|NP_001016781.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Xenopus (Silurana)
           tropicalis]
          Length = 609

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 324 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQQERDWVLCEFRTGKAPIL 383

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 384 IATDVASRGLDVEDIKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 437

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 438 LKQA-----RELVKVLEEAN------QTINPKLMQLVD 464


>gi|225007636|ref|NP_001139357.1| probable ATP-dependent RNA helicase DDX4 isoform 1 [Mus musculus]
 gi|74223562|dbj|BAE21618.1| unnamed protein product [Mus musculus]
 gi|187950715|gb|AAI37602.1| Ddx4 protein [Mus musculus]
 gi|219519729|gb|AAI44761.1| Ddx4 protein [Mus musculus]
          Length = 728

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 541 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 600

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADT 692
            GLDI     V   D        +    +  IGR  R  N+ + I + DT
Sbjct: 601 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDT 645


>gi|33859536|ref|NP_034159.1| probable ATP-dependent RNA helicase DDX4 isoform 2 [Mus musculus]
 gi|20141439|sp|Q61496|DDX4_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Mvh; AltName:
           Full=Vasa homolog
 gi|12852922|dbj|BAB29578.1| unnamed protein product [Mus musculus]
          Length = 702

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 515 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 574

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADT 692
            GLDI     V   D        +    +  IGR  R  N+ + I + DT
Sbjct: 575 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDT 619


>gi|56807749|ref|ZP_00365611.1| COG0513: Superfamily II DNA and RNA helicases [Streptococcus
           pyogenes M49 591]
          Length = 385

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332


>gi|325125148|gb|ADY84478.1| Transcriptional repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 1163

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 63/311 (20%), Positives = 126/311 (40%), Gaps = 35/311 (11%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           SR K  LL GV        +   +  + +P +++  N+  A + Y++       + +E F
Sbjct: 21  SRIKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERYNDLSRLLADDDLELF 80

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
               +          T T +     ++ +I          L  R   ++ +     Y + 
Sbjct: 81  ALDGNL--------ATQTAVSSPDELSSRI----QCLNLLLSGRPGVVIATPQGLQYPLS 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +   + +      +GD +   +L   L +  Y R+++ +  G F + GD ++++P   E 
Sbjct: 129 APALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRES 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+  FG++I+ I  F  LT Q  R++E +          P  T+  A  ++      
Sbjct: 189 -PLRLEFFGDEIDTIKTF-DLTSQ--RSLEEL----------PEATVPAASDHV-----F 229

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEML-ETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
              +L++ GR L A  L +     LE+  E   + Q  ++ +RYL    P     +L +Y
Sbjct: 230 TAEDLDRAGREL-AGDLPKEAAASLEIAQEALANGQLPDDCNRYLDYLLP--KSFSLLDY 286

Query: 465 IPEDSLLFVDE 475
           +P   L+  ++
Sbjct: 287 LPAKGLILFND 297


>gi|322696164|gb|EFY87960.1| ATP-dependent RNA helicase DED1 [Metarhizium acridum CQMa 102]
          Length = 666

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L    G   L+ V TKRMA+ L+++L  ++     +H +    ER   +   R G+  +L
Sbjct: 436 LHTHAGGLTLIFVETKRMADSLSDFLINQSFPATSIHGDRTQRERERALEFFRNGRCPIL 495

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 496 VATAVAARGLDIPNVTHVINYDLPTD-----VDDYVHRIGRTGRAGNTGI 540


>gi|297695799|ref|XP_002825114.1| PREDICTED: endoribonuclease Dicer-like isoform 1 [Pongo abelii]
 gi|297695801|ref|XP_002825115.1| PREDICTED: endoribonuclease Dicer-like isoform 2 [Pongo abelii]
 gi|297695803|ref|XP_002825116.1| PREDICTED: endoribonuclease Dicer-like isoform 3 [Pongo abelii]
          Length = 1922

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GR AR   S  I+ ADT
Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566


>gi|295085452|emb|CBK66975.1| primosomal protein N' [Bacteroides xylanisolvens XB1A]
          Length = 818

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  
Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671

Query: 676 GRAAR-NVNSKVILYADTITKSI 697
           GRA R N   +V+L   +I   I
Sbjct: 672 GRAGRKNKRGRVVLQTKSIEHPI 694


>gi|295699664|ref|YP_003607557.1| DEAD/H associated domain protein [Burkholderia sp. CCGE1002]
 gi|295438877|gb|ADG18046.1| DEAD/H associated domain protein [Burkholderia sp. CCGE1002]
          Length = 1509

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 10/151 (6%)

Query: 539 QCQGIIVEQI-IRPTGLVDPPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           +C  I V  +  R   L  PPV + +  A    E VYD +     Q    L+ V T+RMA
Sbjct: 267 ECAVIDVGHVRARDLALEIPPVPLEAVMANEVWERVYDRLAELVAQHRTTLIFVNTRRMA 326

Query: 596 EDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           E    +L ER  +  V   H  +    R +  + L+ G+  VL+    L  G+DI +  L
Sbjct: 327 ERAARHLTERLGKDAVAAHHGSLAKEHRFDAEQRLKRGELRVLIATASLELGIDIGDVDL 386

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           V      + G  R+    +Q +GR+  +V  
Sbjct: 387 VC-----QMGSPRAIAPFLQRVGRSGHHVGG 412


>gi|302525016|ref|ZP_07277358.1| ATP-dependent DNA helicase RecG [Streptomyces sp. AA4]
 gi|302433911|gb|EFL05727.1| ATP-dependent DNA helicase RecG [Streptomyces sp. AA4]
          Length = 717

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 19/189 (10%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           + +++  +H  + T E+  +++    GK +VLV   ++  G+++P    + ILDAD+ G 
Sbjct: 532 KGLKIAALHGRMPTDEKDAVMQAFGAGKVEVLVATTVVEVGVNVPNATAMVILDADRFGV 591

Query: 665 LRSKTSLIQTIGRAAR-NVNSKVILYADTI----TKSIQLAIDETTRRREKQ---LEHNK 716
               + L Q  GR  R +V    +L  +T+    T+    A++ TT   E     LE  +
Sbjct: 592 ----SQLHQLRGRVGRGSVPGLCLLVTETLDGTSTRERLAAVESTTDGFELSRLDLELRR 647

Query: 717 KHNI--NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLA 774
           + +I    QS K   ++++  +L ++   T     AQ+L      G   L SL     + 
Sbjct: 648 EGDILGAAQSGKRSGLKLLS-LLRDEDLITEARAQAQELV----TGDPELVSLPGLAQMV 702

Query: 775 ADNLNFEEA 783
           AD ++ E A
Sbjct: 703 ADVVDLERA 711


>gi|251793133|ref|YP_003007861.1| ATP-dependent DNA helicase RecG [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534528|gb|ACS97774.1| ATP-dependent DNA helicase RecG [Aggregatibacter aphrophilus
           NJ8700]
          Length = 693

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H  +K  E+ EI+++ +    D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 517 HLRIGLVHGRMKPAEKQEIMQEFKDANLDLLVATTVIEVGVDVPNASLMIIENAERLGL- 575

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITK 695
              + L Q  GR  R   +   V++Y   + K
Sbjct: 576 ---SQLHQLRGRVGRGTTASFCVLMYKPPLGK 604


>gi|167393063|ref|XP_001740410.1| ATP-dependent RNA helicase DBP1 [Entamoeba dispar SAW760]
 gi|165895499|gb|EDR23175.1| ATP-dependent RNA helicase DBP1, putative [Entamoeba dispar SAW760]
          Length = 281

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 15/117 (12%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E + D +   A +G + ++ V TKR A+ L  YLY+   +V  +H +     R +  RD 
Sbjct: 78  EAILDVLREFAGKGEKTVIFVETKRGADMLENYLYDHGYKVDSIHGD-----RSQADRDF 132

Query: 629 RLGKF-----DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            L +F      +LV  ++   GLDIP+  +V   D   E       S +  +GR  R
Sbjct: 133 SLKRFKENVIQLLVATDVASRGLDIPDIEVVINYDMPNE-----IESYVHRVGRTGR 184


>gi|114654623|ref|XP_510148.2| PREDICTED: dicer1 isoform 7 [Pan troglodytes]
          Length = 1715

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GR AR   S  I+ ADT
Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566


>gi|29294649|ref|NP_085124.2| endoribonuclease Dicer isoform 1 [Homo sapiens]
 gi|29294651|ref|NP_803187.1| endoribonuclease Dicer isoform 1 [Homo sapiens]
 gi|257051056|sp|Q9UPY3|DICER_HUMAN RecName: Full=Endoribonuclease Dicer; AltName: Full=Helicase with
           RNase motif; Short=Helicase MOI
 gi|20521696|dbj|BAA76772.2| KIAA0928 protein [Homo sapiens]
 gi|119602002|gb|EAW81596.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Homo sapiens]
 gi|152012889|gb|AAI50288.1| Dicer 1, ribonuclease type III [Homo sapiens]
 gi|307685563|dbj|BAJ20712.1| dicer 1, ribonuclease type III [synthetic construct]
          Length = 1922

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GR AR   S  I+ ADT
Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566


>gi|332532738|ref|ZP_08408612.1| ATP-dependent DNA helicase RecG [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037765|gb|EGI74215.1| ATP-dependent DNA helicase RecG [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 693

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 8/114 (7%)

Query: 589 VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           VL  + AED    L E   ++ V  +H  +K+ E+  I+ + + G   VLV   ++  G+
Sbjct: 498 VLQCQAAEDSALQLKEALPDLNVGLVHGRMKSAEKQAIMSEFKAGNIHVLVATTVIEVGV 557

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           D+P   L+ I + ++ G       L Q  GR  R   +   V+LY   ++ + Q
Sbjct: 558 DVPNASLIIIENPERLGL----AQLHQLRGRVGRGATASHCVLLYHAPLSHTAQ 607


>gi|329936750|ref|ZP_08286457.1| ATP-dependent DNA helicase RecG [Streptomyces griseoaurantiacus
           M045]
 gi|329303980|gb|EGG47863.1| ATP-dependent DNA helicase RecG [Streptomyces griseoaurantiacus
           M045]
          Length = 989

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 15/127 (11%)

Query: 567 QVEDVYDEI--NLAAQQGLRILLTVLTKRMAEDLTEYLYE---RNIRVRYMHSEVKTLER 621
           ++ D  DE+    AA+   R  L VL      D+ E L     R +RV  +H  +   ++
Sbjct: 767 RIGDEADEVRKKAAAEGERRPPLAVL------DVAEQLVAGPLRGLRVEVLHGRMPPEDK 820

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             ++R    G+ DVLV   ++  G+++P    + I+DAD+ G     + L Q  GR  R 
Sbjct: 821 DAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGV----SQLHQLRGRVGRG 876

Query: 682 VNSKVIL 688
               + L
Sbjct: 877 AAPGLCL 883


>gi|303234885|ref|ZP_07321510.1| transcription-repair coupling factor [Finegoldia magna BVS033A4]
 gi|302494003|gb|EFL53784.1| transcription-repair coupling factor [Finegoldia magna BVS033A4]
          Length = 1168

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 59/289 (20%), Positives = 124/289 (42%), Gaps = 32/289 (11%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           + +P +V+  + + A  L +E+ N    N  E+F             P  +       S+
Sbjct: 49  IDKPLVVVVEDNMRARNL-TEYLNDIEENICEFF-------------PSRELNFYNAKSL 94

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ-MIVQLKIGDSVEQKELLS 310
           ++  +  R +    LL     I+V++   +    + +S ++     +K  D +  +EL  
Sbjct: 95  DDNAEDQRVNVLFKLLNNEKFIIVTTFDALTKKITKKSVAKKYAFTIKDTDLINLEELQE 154

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            L   +Y+R D    +G F + G  ++IFP H      R+ +F ++I+ +  F   T + 
Sbjct: 155 KLRVLKYERVDTIESKGQFAIRGGIVDIFPVH-SRFPVRIELFDDEIDSMRFFEVSTQRS 213

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL---IELEKEGRLLEA-QRLEQRI 426
           I + + + I + S  +       + +  I++ L  R+   I  E    + +  ++L + I
Sbjct: 214 IEDCKFVDIISCSELIIEDSKKESIINSIQKNLDKRVDHPIFGENVDNVKDKFEKLMEYI 273

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
             DLE      SC        +LT ++      T+F+Y  +DS++ +++
Sbjct: 274 RSDLEYEIDLVSC--------FLTKKD----YDTVFDYFADDSIMMIED 310


>gi|291165181|gb|ADD81195.1| vasa [Thunnus orientalis]
          Length = 192

 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 50  RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 109

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDIP+   V   D        +    +  IGR  R  N+
Sbjct: 110 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNT 145


>gi|302419543|ref|XP_003007602.1| ATP-dependent RNA helicase DED1 [Verticillium albo-atrum VaMs.102]
 gi|261353253|gb|EEY15681.1| ATP-dependent RNA helicase DED1 [Verticillium albo-atrum VaMs.102]
          Length = 582

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 36/65 (55%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V +KR+A++L ++L+        MHS+   LER   +R  R G   +LV   ++ 
Sbjct: 385 RTIIFVNSKRVADELDDFLFNSGYPCTSMHSDRTQLEREGAMRAFRAGTSPILVATGVMA 444

Query: 644 EGLDI 648
            G+D+
Sbjct: 445 RGIDV 449


>gi|255537355|ref|XP_002509744.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223549643|gb|EEF51131.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 595

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  +D    L  R ++   +H ++  L R  I++  + G+  VLV   L   GLD+PEC 
Sbjct: 458 RQLKDAVFKLEARGMKAAELHGDLGKLSRSTILKKFKNGEVRVLVTNELSARGLDVPECD 517

Query: 653 LVAILD 658
           LV  LD
Sbjct: 518 LVVNLD 523


>gi|195394063|ref|XP_002055665.1| GJ19487 [Drosophila virilis]
 gi|194150175|gb|EDW65866.1| GJ19487 [Drosophila virilis]
          Length = 953

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I++ V TK   ED+ + +         +H +    ER  +++D R GK ++L+  ++  
Sbjct: 494 KIIIFVETKIKVEDILQIIRSEGYTATSIHGDKSQSERDSVLKDFRNGKSNILIATDVAS 553

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     +  S  + +  IGR  R
Sbjct: 554 RGLDVEDLQFVINYD-----YPNSSENYVHRIGRTGR 585


>gi|115480217|ref|NP_001063702.1| Os09g0520700 [Oryza sativa Japonica Group]
 gi|75322251|sp|Q650T9|RH7_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 7
 gi|52076165|dbj|BAD46678.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113631935|dbj|BAF25616.1| Os09g0520700 [Oryza sativa Japonica Group]
          Length = 696

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 12/125 (9%)

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R+AR QV  + D I   ++ G  I+ T  TK  A DL+  +       R +H +V   +R
Sbjct: 352 RAARAQV--IPDIIRCYSRGGRTIIFTE-TKESASDLSGLIAGS----RALHGDVAQAQR 404

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             I+   R GKF VLV  N+   GLDI +  L+   +       R   + I   GR  R 
Sbjct: 405 EVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPP-----RDVEAYIHRSGRTGRA 459

Query: 682 VNSKV 686
            N+ V
Sbjct: 460 GNTGV 464


>gi|281212253|gb|EFA86413.1| hypothetical protein PPL_00205 [Polysphondylium pallidum PN500]
          Length = 1213

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 10/115 (8%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q  L+ +L   T    + +T  +Y     V+  +S +    + E +  L+ G+  V+V
Sbjct: 675 GGQSTLQYILASATIGNPKHMTMKMY-----VKAYYSSLSNKHKQETLNQLKTGQVKVIV 729

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             N L  G+DIPE     I+     G+  SK S  Q +GR  R+    VI    T
Sbjct: 730 ASNALEAGVDIPELDACLII-----GYPGSKMSWKQRVGRVGRSKKGLVIFIPTT 779


>gi|166714784|gb|ABY88104.1| UvrB [Stenotrophomonas sp. ICB209]
          Length = 61

 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 34/53 (64%)

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
           ++FP+  +  + R+ +F  ++E+I+ F PLTG+ +RN++   +Y  +H  T R
Sbjct: 3   DVFPAESDSESPRLELFDGEVEKITMFDPLTGETLRNMQRFTVYPKTHGATTR 55


>gi|119602001|gb|EAW81595.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Homo sapiens]
          Length = 1923

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GR AR   S  I+ ADT
Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566


>gi|21665773|emb|CAB38857.2| hypothetical helicase K12H4.8-like protein [Homo sapiens]
          Length = 1912

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 480 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 532

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GR AR   S  I+ ADT
Sbjct: 533 YRSYVQSKGR-ARAPISNYIMLADT 556


>gi|322701035|gb|EFY92786.1| cell cycle control protein [Metarhizium acridum CQMa 102]
          Length = 397

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE L  R+  V  MH ++   +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 272 TRRKVDWLTEKLTARDFTVSAMHGDMDQTQRDLIMKEFRSGSSRVLIATDLLARGIDVQQ 331

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 332 VSLVINYDLPANRENYI 348


>gi|307133775|ref|NP_001182502.1| endoribonuclease Dicer isoform 2 [Homo sapiens]
 gi|300517087|gb|ADK25182.1| t-Dicer [Homo sapiens]
          Length = 1829

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GR AR   S  I+ ADT
Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566


>gi|241667284|ref|ZP_04754862.1| ATP-dependent DNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875835|ref|ZP_05248545.1| ATP-dependent DNA helicase recG [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841856|gb|EET20270.1| ATP-dependent DNA helicase recG [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 679

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAMQRP---A 196
           F  +  Y  +  Q   I ++L  I  S   ++LL G  G+GKT   A  +    +    A
Sbjct: 245 FYKKLPYQLTQAQQRTITEILADISQSSAMIRLLQGDVGAGKTIVAAMAVYTAVKSGYQA 304

Query: 197 IVMAPNKILAAQLYSEFKNFFP 218
           +VMAP +ILA Q YS F ++ P
Sbjct: 305 VVMAPTEILAEQHYSFFASYMP 326



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 8/107 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            K + ++L E L + N+ + Y    +K+ ++I+ + D +  K+ VLV   ++  G+D+P 
Sbjct: 490 VKTLHKELAEALGKENVGLVY--GSMKSKDKIQEMSDFKAKKYKVLVATTVIEVGVDVPN 547

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
             ++ I +A++ G     + L Q  GR  R       ++LY+D I++
Sbjct: 548 ASIMIIDNAERLGI----SQLHQLRGRVGRGAKESYCILLYSDRISE 590


>gi|237718772|ref|ZP_04549253.1| primosomal protein N [Bacteroides sp. 2_2_4]
 gi|293372147|ref|ZP_06618538.1| primosomal protein N' [Bacteroides ovatus SD CMC 3f]
 gi|299144651|ref|ZP_07037719.1| primosomal protein N' [Bacteroides sp. 3_1_23]
 gi|229451904|gb|EEO57695.1| primosomal protein N [Bacteroides sp. 2_2_4]
 gi|292632939|gb|EFF51526.1| primosomal protein N' [Bacteroides ovatus SD CMC 3f]
 gi|298515142|gb|EFI39023.1| primosomal protein N' [Bacteroides sp. 3_1_23]
          Length = 818

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  
Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671

Query: 676 GRAAR-NVNSKVILYADTITKSI 697
           GRA R N   +V+L   +I   I
Sbjct: 672 GRAGRKNKRGRVVLQTKSIDHPI 694


>gi|212716156|ref|ZP_03324284.1| hypothetical protein BIFCAT_01072 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661523|gb|EEB22098.1| hypothetical protein BIFCAT_01072 [Bifidobacterium catenulatum DSM
           16992]
          Length = 1182

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 69/163 (42%), Gaps = 32/163 (19%)

Query: 222 VEYFVSYY-----DYYQPEAY--------VPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           VE   S+Y     D  Q EA+         PR DT   + +       R++H    S L 
Sbjct: 82  VETIRSWYSGDPNDVAQLEAWETLPHERLSPRADTVASRMAVFR----RLKHPQEGSKLF 137

Query: 269 RNDCIVVSSV-----SCIYGIGSVES--YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
               I+V  V       + G+  VE   +SQ       G+ +   E    LV+  Y R D
Sbjct: 138 GPIRILVMPVRSLIQPVVAGLADVEPLVFSQ-------GEELALDEASRRLVENAYTRVD 190

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + + RG F V G  I++FP  L     R+  FG++I+ I EF+
Sbjct: 191 LVMDRGEFAVRGGIIDVFPPTLPHPV-RIEFFGDEIDTIREFH 232


>gi|189465388|ref|ZP_03014173.1| hypothetical protein BACINT_01737 [Bacteroides intestinalis DSM
           17393]
 gi|189437662|gb|EDV06647.1| hypothetical protein BACINT_01737 [Bacteroides intestinalis DSM
           17393]
          Length = 823

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  G
Sbjct: 618 IIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRSYERAFQLMAQVSG 677

Query: 677 RAAR-NVNSKVILYADTITKSI 697
           RA R N   +VIL   +I   I
Sbjct: 678 RAGRKNKRGRVILQTKSIDHPI 699


>gi|187954507|gb|AAI40777.1| FANCM protein [Homo sapiens]
 gi|219518301|gb|AAI44512.1| FANCM protein [Homo sapiens]
          Length = 2022

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++E+++  R G ++ LV   +  EGLDI E  L+   D+ K     S   L+Q +GR  
Sbjct: 498 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLVQRMGRTG 552

Query: 680 RNVNSKVIL 688
           R    ++++
Sbjct: 553 RKRQGRIVI 561


>gi|251796145|ref|YP_003010876.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247543771|gb|ACT00790.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 535

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L +R      +H ++   +R  ++R  R G  DVLV  ++   GLD+  
Sbjct: 249 TKRRVDELSEGLQKRGYTADGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDV-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  +++ D     +   S +  IGR  R
Sbjct: 307 SGVTHVINFD---LPQDPESYVHRIGRTGR 333


>gi|169830067|ref|YP_001700225.1| hypothetical protein Bsph_4651 [Lysinibacillus sphaericus C3-41]
 gi|168994555|gb|ACA42095.1| Hypothetical yacH protein [Lysinibacillus sphaericus C3-41]
          Length = 182

 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 29/45 (64%)

Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           K  ++ +RK+M  A D   FEEAA++RDE+K L+    F+G D S
Sbjct: 138 KKQIEEIRKRMKFAVDEEQFEEAAKLRDEVKELEKQLQFEGGDVS 182


>gi|114654621|ref|XP_001154071.1| PREDICTED: dicer1 isoform 2 [Pan troglodytes]
          Length = 1868

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GR AR   S  I+ ADT
Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566


>gi|114654611|ref|XP_001154010.1| PREDICTED: dicer1 isoform 1 [Pan troglodytes]
          Length = 1930

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GR AR   S  I+ ADT
Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566


>gi|54026656|ref|YP_120898.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
 gi|54018164|dbj|BAD59534.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
          Length = 602

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 16/164 (9%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  E+L E L  R      ++ ++   +R   I  L+ G  D+LV  ++   
Sbjct: 271 MIIFVRTKQGTEELAEKLRARGFSAAAINGDIAQNQRERTIGQLKSGALDILVATDVAAR 330

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE 703
           GLD+     V   D   +       S +  IGR  R   S + +L+     + +  AI+ 
Sbjct: 331 GLDVDRISHVVNYDIPHD-----TESYVHRIGRTGRAGRSGQALLFVAPRERHLLKAIER 385

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
            TR   ++++     ++N Q V +            DA T N+S
Sbjct: 386 ATRHPLEEMQLPSVEDVNAQRVSK----------FGDAITENLS 419


>gi|50815|emb|CAA26843.1| unnamed protein product [Mus musculus]
 gi|50820|emb|CAA26846.1| unnamed protein product [Mus musculus]
          Length = 370

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 245 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 304

Query: 651 CGLV 654
             LV
Sbjct: 305 VSLV 308


>gi|148548800|ref|YP_001268902.1| transcription-repair coupling factor [Pseudomonas putida F1]
 gi|148512858|gb|ABQ79718.1| transcription-repair coupling factor [Pseudomonas putida F1]
          Length = 1149

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 89/208 (42%), Gaps = 21/208 (10%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   +  R  +++  +   A +L  E + F P   V  F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +       
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELSHG----------ILVVPITTALHRLAPTRFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G +++ +++   L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMG-SKLPYRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKI 379
           +F N+IE +  F P T + I  V+++++
Sbjct: 184 LFDNEIETLRTFDPETQRSIDKVDSVRL 211



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VLV   ++  G+D+P  
Sbjct: 825 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSA 882

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             + I  ADK G       L Q  GR  R+ +     YA  +T + Q    +  +R E
Sbjct: 883 NTIVIERADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPTRQKVSADAEKRLE 933


>gi|329726470|gb|EGG62933.1| helicase C-terminal domain protein [Staphylococcus epidermidis
           VCU144]
          Length = 601

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 563 SARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  +VE +  + N     G  L+ L+ V ++  A  L   L +R I    +  +     
Sbjct: 430 ASNERVEHIIKKTNYYGYSGDVLKGLIFVSSRGEAYQLANQLSKRGISSVGLTGKDSIAY 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E I+ L+ G  + ++ ++L  EG+DIPE   V +L   K     S    IQ +GR  R
Sbjct: 490 RAETIQQLKEGSINYIITVDLFNEGIDIPEINQVVMLRPTK-----SSIIFIQQLGRGLR 544

Query: 681 NVNSK 685
              +K
Sbjct: 545 KSTNK 549


>gi|294776591|ref|ZP_06742061.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
 gi|294449579|gb|EFG18109.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
          Length = 425

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 9/99 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   +++T+      + V  MHS+++  +R +I+R+ + G+ ++L+  +++ 
Sbjct: 246 RVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRINILIATDIVS 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            G+DI +  LV   D   D E +       +  IGR AR
Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTAR 337


>gi|261840195|gb|ACX99960.1| ATP-dependent DNA helicase RecG [Helicobacter pylori 52]
          Length = 621

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177
           N KI  P       N+S+ +  F     +  + DQ  AI ++   + S    + L++G  
Sbjct: 209 NAKIACP-------NNSERLKAFIASLPFKLTHDQQNAIKEIQSDLTSPIACKRLIIGDV 261

Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           G GKT   +A ++ A     ++MAP  ILA QLY+E   F P
Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|226487072|emb|CAX75401.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
          Length = 647

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 5/98 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TKR  + LT  L  R   V  MH   +  +R   +   + G+ ++L+  ++  
Sbjct: 214 RTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLASFKSGRMNILIATDVAS 273

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            GLDI     V   D     F       I  IGR AR+
Sbjct: 274 RGLDIDNIEYVVNFD-----FPNQTEDYIHRIGRTARS 306


>gi|289578512|ref|YP_003477139.1| primosomal protein N' [Thermoanaerobacter italicus Ab9]
 gi|289528225|gb|ADD02577.1| primosomal protein N' [Thermoanaerobacter italicus Ab9]
          Length = 732

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEV--KTLERIEIIRDLRLGKFDVLVGINLLRE 644
           L + T+R+  D+ ++    N RV  M  +   K     +I  D R GK D+L+G  ++ +
Sbjct: 487 LGIGTERVENDIKKFF--PNARVLRMDVDTTRKKGSHEKIFYDFRNGKADILIGTQMISK 544

Query: 645 GLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           G DIP   LV ++ AD    L       R+   L Q  GRA R
Sbjct: 545 GFDIPNVTLVGVILADITLNLPDFRSSERTFQLLTQVAGRAGR 587


>gi|253326818|gb|ACT31323.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Rattus norvegicus]
          Length = 728

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 542 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 601

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADT 692
            GLDI     V   D        +    +  IGR  R  N+ + I + DT
Sbjct: 602 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDT 646


>gi|255691877|ref|ZP_05415552.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
 gi|260622430|gb|EEX45301.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
          Length = 421

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 9/107 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   +++ + L    + V  MHS+++  +R  ++ + + G+ ++LV  +++ 
Sbjct: 246 RVIIFASSKIKVKEVAKALMAMKLNVGEMHSDLEQAQRETVMHEFKAGRVNILVATDIVA 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+DI +  LV   D   D E +       +  IGR AR  N  V L
Sbjct: 306 RGIDIDDIRLVINFDVPHDSEDY-------VHRIGRTARANNDGVAL 345


>gi|145353098|ref|XP_001420866.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581101|gb|ABO99159.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 404

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + LTE + + N  V  MH ++   ER EI+ + R
Sbjct: 263 DLYDTLTIT-----QAVIFCNTKKKVDWLTEKMRQNNFTVSAMHGDMPQKEREEIMNEFR 317

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV  ++ D  G   ++ + I  IGR+ R
Sbjct: 318 GGTTRVLITTDVWARGIDVQQVSLV--INYDLPG---NRENYIHRIGRSGR 363


>gi|116628939|ref|YP_814111.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238853538|ref|ZP_04643910.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4]
 gi|311111251|ref|ZP_07712648.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
 gi|116094521|gb|ABJ59673.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC
           33323]
 gi|238833834|gb|EEQ26099.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4]
 gi|311066405|gb|EFQ46745.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
          Length = 485

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++   +R+ +++  R GK D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVSHVYNYD---IPQDPDSYVHRIGRTGR 332


>gi|73963946|ref|XP_868526.1| PREDICTED: similar to dicer1 isoform 4 [Canis familiaris]
          Length = 1900

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GR AR   S  I+ ADT
Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566


>gi|317056475|ref|YP_004104942.1| primosomal protein N' [Ruminococcus albus 7]
 gi|315448744|gb|ADU22308.1| primosomal protein N' [Ruminococcus albus 7]
          Length = 817

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 82  SSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLK---NGKIWTPHRSWSINNHSKDI 138
           + ++  +K+  E+ E++ + SV+ L  +    + ++K      +   +    + N   + 
Sbjct: 205 ADLTPKQKKVVELLEESGSASVKELCYMTGCTSTIIKRLCEKDVIRVYEQEVMRNAVGEF 264

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKTFTMAKVIEA---MQR 194
           T  +   D   + +Q  A   ++  I + +    LL GVTGSGKT    KVI++   M +
Sbjct: 265 TVRESPEDIVLNDEQKMAYNGIMNLIRTEKPAGALLYGVTGSGKTSVFIKVIDSVIKMGK 324

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHN 220
            AI++ P   L  Q+ + FK  F  N
Sbjct: 325 TAIMLVPEISLTPQMLARFKVLFGEN 350


>gi|302039582|ref|YP_003799904.1| transcription-repair-coupling factor [Candidatus Nitrospira
           defluvii]
 gi|300607646|emb|CBK43979.1| Transcription-repair-coupling factor [Candidatus Nitrospira
           defluvii]
          Length = 1157

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           ++  I+Q +   S+E++ L+SSL++  Y++  +  I G F + G  ++I+ +   D   R
Sbjct: 145 FTDAILQFRPDGSLEREALVSSLLRLGYRKGSVVEIPGEFSIRGGIVDIYSTAYAD-PLR 203

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           V   G+ IE I  F P T +    ++   +      + P
Sbjct: 204 VEFLGDTIESIRFFDPATQKSTDKIKQAWVLPARELIRP 242


>gi|282851939|ref|ZP_06261299.1| type III restriction enzyme, res subunit [Lactobacillus gasseri
           224-1]
 gi|282556948|gb|EFB62550.1| type III restriction enzyme, res subunit [Lactobacillus gasseri
           224-1]
          Length = 371

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 33/63 (52%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           ++ + +   +  I  ++  S     ER  I+ D R GK  +L  ++L+ EG D+P+C  V
Sbjct: 193 SQKIVKRFQDNGINAKHCDSTTPAKERDRIMNDFREGKIKILSNVDLISEGFDVPDCSCV 252

Query: 655 AIL 657
            +L
Sbjct: 253 ILL 255


>gi|258645792|ref|ZP_05733261.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
           DSM 15470]
 gi|260403163|gb|EEW96710.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
           DSM 15470]
          Length = 510

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TKR A+++TE L +R      +H ++   +R  ++R  + G  D+LV  ++   G
Sbjct: 245 IVFVRTKRRADEVTEALKKRGYMAEGLHGDLSQQKRDAVVRQFKEGTIDILVATDVAARG 304

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDI   G+  + + D     +   + +  +GR  R
Sbjct: 305 LDI--SGVTHVYNFD---MPQDSETYVHRVGRTGR 334


>gi|256751660|ref|ZP_05492535.1| TRCF domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749469|gb|EEU62498.1| TRCF domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 405

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H +++  +  +++ D   G++DVLV   ++  GLDIP    + + DADK G    
Sbjct: 101 RVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDADKLGL--- 157

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 158 -SQLYQLRGRVGRS 170


>gi|223590235|sp|A5DL80|DBP2_PICGU RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 554

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A +  ++L+   TKR  +++T YL         +H + +  ER  ++R+ + GK  ++V 
Sbjct: 369 ADKEAKVLIFSSTKRACDEITSYLRADGWPALAIHGDKQQNERDWVLREFKTGKSPIMVA 428

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            ++   G+D+   G+  +++ D  G +      I   GRA     + V L+ +  +K
Sbjct: 429 TDVAARGIDVK--GISYVINYDMPGNIEDYVHRIGRTGRAG-TTGTAVSLFTEANSK 482


>gi|149374936|ref|ZP_01892709.1| helicase-related protein [Marinobacter algicola DG893]
 gi|149360825|gb|EDM49276.1| helicase-related protein [Marinobacter algicola DG893]
          Length = 1282

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 11/114 (9%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           QV  V+ E     Q+  R L   +++  A+ + +    + +R   +H E + + R E + 
Sbjct: 614 QVHRVWGE-----QKQSRTLAFCVSRVHADFMADQFSRKGVRSAAVHGESE-MSRGEALE 667

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            L  G+ DV+  ++L  EG+D+P    V +L   +     SK   +Q IGR  R
Sbjct: 668 KLENGQLDVIFSVDLFNEGVDLPAIDTVLLLRPTE-----SKILFLQQIGRGLR 716


>gi|119586186|gb|EAW65782.1| Fanconi anemia, complementation group M, isoform CRA_b [Homo
           sapiens]
          Length = 2083

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++E+++  R G ++ LV   +  EGLDI E  L+   D+ K     S   L+Q +GR  
Sbjct: 524 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLVQRMGRTG 578

Query: 680 RNVNSKVIL 688
           R    ++++
Sbjct: 579 RKRQGRIVI 587


>gi|109084784|ref|XP_001100868.1| PREDICTED: endoribonuclease Dicer [Macaca mulatta]
          Length = 1920

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R + M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 490 RNKQMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 542

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GR AR   S  I+ ADT
Sbjct: 543 YRSYVQSKGR-ARAPISNYIMLADT 566


>gi|313499733|gb|ADR61099.1| Mfd [Pseudomonas putida BIRD-1]
          Length = 1141

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 89/208 (42%), Gaps = 21/208 (10%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   +  R  +++  +   A +L  E + F P   V  F  +    YD 
Sbjct: 13  LPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDWETLPYDL 72

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +       
Sbjct: 73  FSPH-----QDIISQRIASLY-RLPELSHG----------ILVVPITTALHRLAPTRFLL 116

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G +++ +++   L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 117 GSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMG-SKLPYRID 175

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKI 379
           +F N+IE +  F P T + I  V+++++
Sbjct: 176 LFDNEIETLRTFDPETQRSIDKVDSVRL 203



 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VLV   ++  G+D+P  
Sbjct: 817 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSA 874

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             + I  ADK G       L Q  GR  R+ +     YA  +T + Q    +  +R E
Sbjct: 875 NTIVIERADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPTRQKVSADAEKRLE 925


>gi|300362413|ref|ZP_07058589.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03]
 gi|300353404|gb|EFJ69276.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03]
          Length = 485

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++   +R+ +++  R GK D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVSHVYNYD---IPQDPDSYVHRIGRTGR 332


>gi|193785182|dbj|BAG54335.1| unnamed protein product [Homo sapiens]
          Length = 674

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 237 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 296

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 297 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 348


>gi|157704331|gb|ABV68854.1| elongation initiation factor 4A [Trichoplusia ni]
          Length = 171

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++A     + ++   T+R  + LTE ++ R+  V  MH ++   ER  I+R  R
Sbjct: 30  DLYDTLSIA-----QAVIFCNTRRKVDWLTESMHGRDFTVSAMHGDMDQREREVIMRQFR 84

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  +LL  G+D+ +   V
Sbjct: 85  TGSSRVLITTDLLARGIDVQQVSCV 109


>gi|56756857|gb|AAW26600.1| SJCHGC06283 protein [Schistosoma japonicum]
          Length = 402

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +        ++   TKR    LTE + + N  V  MH ++   ER +I++D R
Sbjct: 261 DLYDTLTVTQS-----VIFCNTKRKVAWLTEKMLKNNFTVASMHGDMVQKEREKIMKDFR 315

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  +L   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 316 AGDSRVLITTDLWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 361


>gi|148237065|ref|NP_001080139.1| eukaryotic translation initiation factor 4A2 [Xenopus laevis]
 gi|27371050|gb|AAH41252.1| Eif4a2-prov protein [Xenopus laevis]
          Length = 263

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 185 TRRKVDWLTEKMHSRDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 244

Query: 651 CGLVAILD--ADKEGFLRS 667
             LV   D   ++E ++ S
Sbjct: 245 VSLVINYDLPTNRENYIHS 263


>gi|260175390|ref|ZP_05761802.1| primosomal protein N' (replication factor Y) [Bacteroides sp. D2]
 gi|315923620|ref|ZP_07919860.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697495|gb|EFS34330.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 818

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  
Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671

Query: 676 GRAAR-NVNSKVILYADTITKSI 697
           GRA R N   +V+L   +I   I
Sbjct: 672 GRAGRKNKRGRVVLQTKSIDHPI 694


>gi|257484414|ref|ZP_05638455.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 546

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 121/307 (39%), Gaps = 55/307 (17%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +   +   
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELEHG----------VLVVPITTALHRLAPTKFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPFRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P T + I  VE++++                       L  R   L+
Sbjct: 184 LFDDEIETLRTFDPDTQRSIDKVESVRL-----------------------LPAREFPLQ 220

Query: 412 KEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           KE       R  +R   D       + L +  +   IE Y          E   TLF+Y+
Sbjct: 221 KEEVTRFKARFRERFDVDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYL 275

Query: 466 PEDSLLF 472
           P+D+ +F
Sbjct: 276 PQDTQVF 282


>gi|239928514|ref|ZP_04685467.1| putative ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC
           14672]
 gi|291436839|ref|ZP_06576229.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291339734|gb|EFE66690.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 719

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++  LT   AE+ T+YL  R  RV       +  +R++   DL   +   LV  + L  G
Sbjct: 253 IVYALTVAAAEETTDYLRRRGFRVASYTGRTENADRLQAEADLLENRVKALVATSALGMG 312

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            D P+ G V  L     G   S  +  Q +GRA R V    +L
Sbjct: 313 FDKPDLGFVVHL-----GSPSSPIAYYQQVGRAGRGVAHADVL 350


>gi|224071778|ref|XP_002303572.1| predicted protein [Populus trichocarpa]
 gi|222841004|gb|EEE78551.1| predicted protein [Populus trichocarpa]
          Length = 563

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  +D    L  R ++   +H ++  L R  I++  + G+  VLV   L   GLD+PEC 
Sbjct: 427 RQLKDAVFKLEARGMKAAELHGDLGKLGRSTILKKFKSGEVRVLVTNELAARGLDVPECD 486

Query: 653 LVAILD 658
           LV  LD
Sbjct: 487 LVVNLD 492


>gi|221060158|ref|XP_002260724.1| ATP-dependent DNA helicase [Plasmodium knowlesi strain H]
 gi|193810798|emb|CAQ42696.1| ATP-dependent DNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 1252

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V +K+  E++  +L E+ + VR  H+++   E+ E        +  ++V       G
Sbjct: 285 LIYVTSKKECENIFSFLKEKGLLVRMYHADLSNDEKKEAHEKFLKDEVQIIVATVAFGMG 344

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILY 689
           +D P+   +        GF RS  + +Q +GRA R N N++ IL+
Sbjct: 345 IDKPDIRRII-----HYGFSRSLEAYVQQVGRAGRDNSNAEAILF 384


>gi|190344782|gb|EDK36533.2| hypothetical protein PGUG_00631 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 413

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI++  R G  +VLV  ++  EGLDI E  L+   D+       S    IQ +GR  R  
Sbjct: 8   EIVKKFRSGDINVLVATSIGEEGLDIGEVDLIVCYDS-----TSSPIKNIQRMGRTGRKR 62

Query: 683 NSKVIL 688
           + KV+L
Sbjct: 63  DGKVLL 68


>gi|239917090|ref|YP_002956648.1| transcription-repair coupling factor Mfd [Micrococcus luteus NCTC
           2665]
 gi|281414448|ref|ZP_06246190.1| transcription-repair coupling factor [Micrococcus luteus NCTC 2665]
 gi|239838297|gb|ACS30094.1| transcription-repair coupling factor Mfd [Micrococcus luteus NCTC
           2665]
          Length = 1218

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 11/96 (11%)

Query: 273 IVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
           IVV+ V  +      G+G +       V L+ G+  +   ++++L    Y R D+   RG
Sbjct: 141 IVVAPVRAVLQPLVAGLGELSP-----VTLRTGEERDFDGVVAALADAAYSRVDMVSRRG 195

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            F V G  I++FP   ED   R+  FG+++E++  F
Sbjct: 196 EFAVRGGLIDVFPP-TEDYPVRIEFFGDEVEQMRWF 230


>gi|163753497|ref|ZP_02160621.1| transcription-repair coupling factor [Kordia algicida OT-1]
 gi|161327229|gb|EDP98554.1| transcription-repair coupling factor [Kordia algicida OT-1]
          Length = 1095

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 11/144 (7%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLT----VLTKRMAEDLTEYLYERNIRVRYMH 613
           P+E    R Q E + D ++   Q+G ++          K +A  +   + +  I + +  
Sbjct: 721 PIETHVIRFQEETIRDAVSYEIQRGGQVFFIHNRIENIKEVAGMIQRLVPDAKIGIGHGQ 780

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            E K LE++ +      G+FDVLV   ++  GLD+P    + I +A+  G     + L Q
Sbjct: 781 MEGKKLEKLMLA--FMNGEFDVLVSTTIIESGLDVPNANTIFINNANNFGL----SDLHQ 834

Query: 674 TIGRAARNVNSKVILYADTITKSI 697
             GR  R+ N K   Y  T   S+
Sbjct: 835 MRGRVGRS-NKKAFCYFITPPDSV 857


>gi|156391127|ref|XP_001635620.1| predicted protein [Nematostella vectensis]
 gi|156222716|gb|EDO43557.1| predicted protein [Nematostella vectensis]
          Length = 518

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 90/200 (45%), Gaps = 23/200 (11%)

Query: 519 NCLRPT--TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI- 575
           N +RP   T++ SAT        C+ I+V+ +    G +    E     TQ+  +++ + 
Sbjct: 279 NNVRPDRQTLLFSATFKKKVEHLCRDILVDPVRVVIGELG---EANEDVTQIVHIFNSMP 335

Query: 576 --------NLAAQQGLRILLTVLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
                   NL +      +L  +TK++ +E+L   L + +  V  +H ++   ER +++ 
Sbjct: 336 SKWEWLTQNLVSFASAGSVLIFVTKKLNSEELATNLRKNDFEVALLHGDMDQFERSKVLG 395

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             +  +  +LV  ++   GLDIP    V   D  ++  + + T  I   GRA    N+  
Sbjct: 396 QFKKREIPILVATDVAARGLDIPSIKTVINYDVARD--ITTHTHRIGRTGRAGEKGNAYT 453

Query: 687 IL------YADTITKSIQLA 700
           +L      +A  + +++++A
Sbjct: 454 LLTQSDQNFAGDLVRNLEIA 473


>gi|148550419|ref|YP_001270521.1| ATP-dependent DNA helicase RecG [Pseudomonas putida F1]
 gi|148514477|gb|ABQ81337.1| ATP-dependent DNA helicase RecG [Pseudomonas putida F1]
          Length = 692

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L   L E  +RV  +H  +K  E+ EI+ + + G   +LV   ++  G+D+P   L+ 
Sbjct: 508 EELGSALGE--LRVGLIHGRMKPAEKAEIMAEFKAGNLQLLVATTVIEVGVDVPNASLMI 565

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 566 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 603


>gi|330889122|gb|EGH21783.1| transcription-repair coupling factor [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 1150

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 121/307 (39%), Gaps = 55/307 (17%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +   +   
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELEHG----------VLVVPITTALHRLAPTKFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPFRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P T + I  VE++++                       L  R   L+
Sbjct: 184 LFDDEIETLRTFDPDTQRSIDKVESVRL-----------------------LPAREFPLQ 220

Query: 412 KEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           KE       R  +R   D       + L +  +   IE Y          E   TLF+Y+
Sbjct: 221 KEEVTRFKARFRERFDVDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYL 275

Query: 466 PEDSLLF 472
           P+D+ +F
Sbjct: 276 PQDTQVF 282



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VL+   ++  G+D+P  
Sbjct: 826 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 884 NTIIIERADKFGL----AQLHQLRGRVGRS 909


>gi|325275147|ref|ZP_08141120.1| ATP-dependent DNA helicase RecG [Pseudomonas sp. TJI-51]
 gi|324099719|gb|EGB97592.1| ATP-dependent DNA helicase RecG [Pseudomonas sp. TJI-51]
          Length = 692

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L   L E  +RV  +H  +K  E+ EI+ + + G   +LV   ++  G+D+P   L+ 
Sbjct: 508 EELGSALGE--LRVGLIHGRMKPAEKAEIMAEFKAGNLQLLVATTVIEVGVDVPNASLMI 565

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 566 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 603


>gi|323350835|ref|ZP_08086494.1| transcription-repair coupling factor [Streptococcus sanguinis
           VMC66]
 gi|322123009|gb|EFX94712.1| transcription-repair coupling factor [Streptococcus sanguinis
           VMC66]
          Length = 1167

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 14/227 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E   +  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F++  D    E      +    +  ++N  ID           +++  
Sbjct: 71  LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDH----------QKSGI 119

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V +  +    +     +    + L +G   +   L+  L +  YK+    + +G + + 
Sbjct: 120 LVTNVAASKLLLPDPIDFKTTNINLIVGQEYDLNNLVKMLSRTGYKKVSQVLSQGEYSLR 179

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I
Sbjct: 180 GDILDIFERSAE-FPYRLEFFGDEIDGIRIFNPENQTSIENIESILI 225



 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  +     + D   G++D+LV   ++  G+DIP    + + +AD  G     
Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL---- 908

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 909 STLYQLRGRVGR---SNRIAYA 927


>gi|296104251|ref|YP_003614397.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058710|gb|ADF63448.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 442

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  ++  R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +VL
Sbjct: 243 LKQEEATRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMAQIKRTEGIKRLTDGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR  R
Sbjct: 303 VATDVAARGIDIPDVSHVINFD-----MPRSGDTYLHRIGRTGR 341


>gi|238024884|ref|YP_002909116.1| DEAD/H associated domain-containing protein [Burkholderia glumae
           BGR1]
 gi|237879549|gb|ACR31881.1| DEAD/H associated domain protein [Burkholderia glumae BGR1]
          Length = 1632

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSE 615
           P+E   A    E VYD I   A      L+ V T+RMAE L  +L ER  +  +   H  
Sbjct: 345 PLEPVMANDVWERVYDRIAELAAGHRTTLVFVNTRRMAERLARHLGERLGHDLIAAHHGS 404

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ G+  +LV    L  G+DI E  LV  +     G  R     +Q +
Sbjct: 405 LAKESRFDAEQRLKHGRLKLLVATASLELGIDIGEVELVCQI-----GSPRGIAPFLQRV 459

Query: 676 GRAARNVNS 684
           GR+   V  
Sbjct: 460 GRSGHQVGG 468


>gi|226939558|ref|YP_002794631.1| Mfd [Laribacter hongkongensis HLHK9]
 gi|226714484|gb|ACO73622.1| Mfd [Laribacter hongkongensis HLHK9]
          Length = 1131

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/212 (19%), Positives = 87/212 (41%), Gaps = 21/212 (9%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKES 249
           +P +++  +   A ++  E   F P   V +F  +    YD   P A     D   E+ +
Sbjct: 35  QPLVILTADPQAARRIADELPFFDPELEVAFFPDWETLPYDQLSPHA-----DLVSERLA 89

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELL 309
           ++     ++R         + D IV +  + +  +  VE  +     LK GD ++  +L 
Sbjct: 90  TLW----KLRQG-------KADVIVTAVPTAMGRLAPVEFLAGRTFLLKAGDRLDADQLR 138

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369
           + L    Y         G F V G  I++FPS    + +R+ +F ++I+ +  F   T +
Sbjct: 139 ADLALAGYTHVTQVYAPGEFSVRGGLIDLFPSGAA-LPYRIELFDDEIDTLRTFDVDTQR 197

Query: 370 KIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
            +  V  +++     + T    +    ++ +E
Sbjct: 198 TLYPVNDVRLLPAREFPTDEGGVTAFRQHFRE 229



 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           M E LTE L E   RV+  H +++  E  +++RD    +F+VL+   ++  G+DIP    
Sbjct: 815 MREKLTELLPE--ARVQVAHGQMRERELEQVMRDFNQQRFNVLLCSTIIETGIDIPNANT 872

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARN 681
           + I  AD+ G       L Q  GR  R+
Sbjct: 873 IIIHRADRFGL----AQLHQLRGRVGRS 896


>gi|160883094|ref|ZP_02064097.1| hypothetical protein BACOVA_01062 [Bacteroides ovatus ATCC 8483]
 gi|156111566|gb|EDO13311.1| hypothetical protein BACOVA_01062 [Bacteroides ovatus ATCC 8483]
          Length = 818

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  
Sbjct: 612 KIIADFEQGKTDILIGTQMVSKGLDFDHVSIVGILNADTMLNYPDFRSYERAFQLMAQVA 671

Query: 676 GRAAR-NVNSKVILYADTITKSI 697
           GRA R N   +V+L   +I   I
Sbjct: 672 GRAGRKNKRGRVVLQTKSIDHPI 694


>gi|15806542|ref|NP_295255.1| transcription-repair coupling factor [Deinococcus radiodurans R1]
 gi|6459293|gb|AAF11095.1|AE001997_1 transcription-repair coupling factor [Deinococcus radiodurans R1]
          Length = 1054

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 593 RMAEDLTEYLYERNI----RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           R+A      LY RN+    R+   H  +   E  EI+     G FDVL+   ++  GLDI
Sbjct: 732 RIASIGARSLYLRNLVPEARIGVAHGRMNEEELEEIMLGFEQGAFDVLLATTIVETGLDI 791

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQ 698
           PE   + I  +D+ G       L Q  GR  R   +    + Y   +T++ Q
Sbjct: 792 PEANTILIERSDRLGL----AQLYQLRGRVGRRAQTAYAYLFYPPRMTENAQ 839


>gi|322706990|gb|EFY98569.1| DEAD-box helicases & Helicase superfamily domain-containing protein
           [Metarhizium anisopliae ARSEF 23]
          Length = 397

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE L  R+  V  MH ++   +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 272 TRRKVDWLTEKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQ 331

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 332 VSLVINYDLPANRENYI 348


>gi|298486416|ref|ZP_07004477.1| Transcription-repair coupling factor [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159044|gb|EFI00104.1| Transcription-repair coupling factor [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 1152

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 121/307 (39%), Gaps = 55/307 (17%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +   +   
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELEHG----------VLVVPITTALHRLAPTKFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPFRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P T + I  VE++++                       L  R   L+
Sbjct: 184 LFDDEIETLRTFDPDTQRSIDKVESVRL-----------------------LPAREFPLQ 220

Query: 412 KEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           KE       R  +R   D       + L +  +   IE Y          E   TLF+Y+
Sbjct: 221 KEEVTRFKARFRERFDVDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYL 275

Query: 466 PEDSLLF 472
           P+D+ +F
Sbjct: 276 PQDTQVF 282



 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VL+   ++  G+D+P  
Sbjct: 828 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 885

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 886 NTIIIERADKFGL----AQLHQLRGRVGRS 911


>gi|302502754|ref|XP_003013338.1| hypothetical protein ARB_00523 [Arthroderma benhamiae CBS 112371]
 gi|291176901|gb|EFE32698.1| hypothetical protein ARB_00523 [Arthroderma benhamiae CBS 112371]
          Length = 455

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 271 TRRKVDWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 330

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 331 VSLVINYDLPANRENYI 347


>gi|227888879|ref|ZP_04006684.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
           ATCC 33200]
 gi|227850572|gb|EEJ60658.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
           ATCC 33200]
          Length = 484

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++   +R+ +++  R GK D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVSHVYNYD---IPQDPDSYVHRIGRTGR 332


>gi|212693337|ref|ZP_03301465.1| hypothetical protein BACDOR_02849 [Bacteroides dorei DSM 17855]
 gi|212664102|gb|EEB24674.1| hypothetical protein BACDOR_02849 [Bacteroides dorei DSM 17855]
          Length = 423

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 9/99 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   +++T+      + V  MHS+++  +R +I+R+ + G+ ++L+  +++ 
Sbjct: 246 RVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRINILIATDIVS 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            G+DI +  LV   D   D E +       +  IGR AR
Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTAR 337


>gi|125716894|ref|YP_001034027.1| transcription-repair coupling factor [Streptococcus sanguinis SK36]
 gi|125496811|gb|ABN43477.1| Transcription-repair coupling factor, putative [Streptococcus
           sanguinis SK36]
          Length = 1167

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 14/227 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E   +  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F++  D    E      +    +  ++N  ID           +++  
Sbjct: 71  LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDH----------QKSGI 119

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V +  +    +     +    + L +G   +   L+  L +  YK+    + +G + + 
Sbjct: 120 LVTNVAASKLLLPDPIDFKTTNINLIVGQEYDLNNLVKMLSRTGYKKVSQVLSQGEYSLR 179

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I
Sbjct: 180 GDILDIFERSAE-FPYRLEFFGDEIDGIRIFNPENQTSIENIESILI 225



 Score = 38.1 bits (87), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  +     + D   G++D+LV   ++  G+DIP    + + +AD  G     
Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL---- 908

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 909 STLYQLRGRVGR---SNRIAYA 927


>gi|118617568|ref|YP_905900.1| ATP-dependent DNA helicase RecG [Mycobacterium ulcerans Agy99]
 gi|118569678|gb|ABL04429.1| ATP-dependent DNA helicase RecG [Mycobacterium ulcerans Agy99]
          Length = 743

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  MH  +   E+   +   R G  DVLV   ++  G+D+P   ++ ++DAD+ G  
Sbjct: 558 GLRLALMHGRLSADEKEAAMAAFRAGNVDVLVCTTVIEVGVDVPNATVMLVMDADRFGI- 616

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTIT 694
              + L Q  GR  R  +  + L A  ++
Sbjct: 617 ---SQLHQLRGRIGRGEHPSLCLLASWVS 642


>gi|50303057|ref|XP_451466.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660682|sp|Q6CX73|FAL1_KLULA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49640597|emb|CAH03054.1| KLLA0A10659p [Kluyveromyces lactis]
          Length = 398

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T++  + L+  L + N  V  MH ++K  ER +++ D R
Sbjct: 257 DLYDSLTIT-----QCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GK  VL+  ++   G+D+ +  LV   D        +  + I  IGR+ R
Sbjct: 312 SGKARVLISTDVWARGIDVQQISLVINYDIPD-----NLENYIHRIGRSGR 357


>gi|311743167|ref|ZP_07716975.1| transcription-repair coupling factor [Aeromicrobium marinum DSM
           15272]
 gi|311313847|gb|EFQ83756.1| transcription-repair coupling factor [Aeromicrobium marinum DSM
           15272]
          Length = 1169

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           V++++GD  E   L+  L    Y R D+   RG F V G  +++FP   E+   R+  +G
Sbjct: 153 VEIRVGDDHELDALVRDLAAAAYTRVDLVERRGEFAVRGGIVDVFPP-TEEHPLRLEFWG 211

Query: 355 NDIEEISEF 363
           + +EEI  F
Sbjct: 212 DTVEEIRRF 220


>gi|270159019|ref|ZP_06187675.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968]
 gi|289166145|ref|YP_003456283.1| ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A)
           [Legionella longbeachae NSW150]
 gi|269987358|gb|EEZ93613.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968]
 gi|288859318|emb|CBJ13253.1| putative ATP-dependent RNA helicase deaD (cold-shock DEAD-box
           protein A) [Legionella longbeachae NSW150]
          Length = 569

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           LA +    +++ V TK   E++ E L ++ +R   +H ++    R  II   R G  D+L
Sbjct: 240 LAVEDYQGVIVFVRTKSSTEEVAEILQQQGLRAMAIHGDITQALRERIIAQFRQGAIDIL 299

Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           V  ++   GLD+     V   D   D E +       +  IGR  R   S V IL+    
Sbjct: 300 VATDVAARGLDVERVTHVINYDLPHDNETY-------VHRIGRTGRAGRSGVAILFVTPK 352

Query: 694 TKSIQLAIDETTRRR 708
              +  +I+  TR+R
Sbjct: 353 EGRLITSIERHTRQR 367


>gi|254884100|ref|ZP_05256810.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|319640865|ref|ZP_07995576.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
 gi|254836893|gb|EET17202.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|317387502|gb|EFV68370.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
          Length = 425

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 9/99 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   +++T+      + V  MHS+++  +R +I+R+ + G+ ++L+  +++ 
Sbjct: 246 RVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRINILIATDIVS 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            G+DI +  LV   D   D E +       +  IGR AR
Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTAR 337


>gi|229821387|ref|YP_002882913.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
 gi|229567300|gb|ACQ81151.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
           12333]
          Length = 580

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL I+ T  TKR A  + + L +R      +H ++    R + +R  R GK DVLV
Sbjct: 295 ADGRGLTIVFT-RTKRTAAKVADELVDRGFAAAAIHGDLGQGAREQALRAFRHGKVDVLV 353

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             ++   G+DI +   V      ++     + + +  IGR  R  N+   +
Sbjct: 354 ATDVAARGIDIDDVTHVVNYQCPED-----EKTFLHRIGRTGRAGNTGTAV 399


>gi|169824178|ref|YP_001691789.1| transcription-repair coupling factor [Finegoldia magna ATCC 29328]
 gi|167830983|dbj|BAG07899.1| transcription-repair coupling factor [Finegoldia magna ATCC 29328]
          Length = 1168

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 58/289 (20%), Positives = 124/289 (42%), Gaps = 32/289 (11%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           + +P +V+  + + A  L +E+ N    N  E+F             P  +       S+
Sbjct: 49  INKPLVVVVEDNMRARNL-TEYLNDIEENICEFF-------------PSRELNFYNAKSL 94

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ-MIVQLKIGDSVEQKELLS 310
           ++  +  R +    LL     I+V++   +    + +S ++     +K  D +  +EL  
Sbjct: 95  DDNAEDQRVNVLFKLLNNEKFIIVTTFDALTKKITKKSVAKKYAFTIKDTDLINLEELQE 154

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            L   +Y+R D    +G F + G  ++IFP H      R+ +F ++I+ +  F   T + 
Sbjct: 155 KLRALKYERVDTIESKGQFAIRGGIVDIFPVH-SRFPVRIELFDDEIDSMRFFEVSTQRS 213

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL---IELEKEGRLLEA-QRLEQRI 426
           I + + + I + S  +       + +  I++ L  R+   I  E    + +  ++L + I
Sbjct: 214 IEDCKFVDIISCSELIIEDSKKESIINSIQKNLDKRVDHPIFGENVDNVKDKFEKLMEYI 273

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
             DLE      SC        +LT ++      T+F+Y  +D+++ +++
Sbjct: 274 RSDLEYEIDLVSC--------FLTKKD----YDTVFDYFADDTIMMIED 310


>gi|158300210|ref|XP_001689233.1| AGAP012358-PB [Anopheles gambiae str. PEST]
 gi|158300212|ref|XP_320199.4| AGAP012358-PA [Anopheles gambiae str. PEST]
 gi|157013048|gb|EDO63299.1| AGAP012358-PB [Anopheles gambiae str. PEST]
 gi|157013049|gb|EAA00143.4| AGAP012358-PA [Anopheles gambiae str. PEST]
          Length = 598

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 9/103 (8%)

Query: 581 QGLR--ILLTVLTKRMAEDL-TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           QGL   +L+ V +K  A+ L TE +Y+  + V  +HS+    ER  ++R  R GK  +L+
Sbjct: 387 QGLHPPVLVFVQSKDRAQQLFTELIYD-GLNVDVIHSDRTQRERDNVVRAFREGKIWILI 445

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+  G+D     LV   D     F  S  S +  IGR  R
Sbjct: 446 CTELMSRGIDFKGVNLVVNYD-----FPPSTISYVHRIGRTGR 483


>gi|50290013|ref|XP_447438.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661246|sp|Q6FQQ6|IF4A_CANGA RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|49526748|emb|CAG60375.1| unnamed protein product [Candida glabrata]
          Length = 396

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD I++      + ++   T+R  E+LT+ L   N  V  ++S++   ER  I+++ R
Sbjct: 254 DLYDSISVT-----QAVIFCNTRRKVEELTQRLTADNFTVSSIYSDLPQQERDTIMKEFR 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   +L+  +LL  G+D+ +  LV   D   +KE ++
Sbjct: 309 SGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYI 346


>gi|74959747|ref|NP_065988.1| Fanconi anemia group M protein [Homo sapiens]
 gi|78099254|sp|Q8IYD8|FANCM_HUMAN RecName: Full=Fanconi anemia group M protein; Short=Protein FACM;
           AltName: Full=ATP-dependent RNA helicase FANCM; AltName:
           Full=Fanconi anemia-associated polypeptide of 250 kDa;
           Short=FAAP250; AltName: Full=Protein Hef ortholog
 gi|71912519|gb|AAZ53290.1| Fanconi anemia complementation group M [Homo sapiens]
 gi|119586185|gb|EAW65781.1| Fanconi anemia, complementation group M, isoform CRA_a [Homo
           sapiens]
 gi|162319388|gb|AAI56491.1| Fanconi anemia, complementation group M [synthetic construct]
          Length = 2048

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++E+++  R G ++ LV   +  EGLDI E  L+   D+ K     S   L+Q +GR  
Sbjct: 524 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLVQRMGRTG 578

Query: 680 RNVNSKVIL 688
           R    ++++
Sbjct: 579 RKRQGRIVI 587


>gi|322388970|ref|ZP_08062541.1| helicase [Streptococcus parasanguinis ATCC 903]
 gi|321144339|gb|EFX39746.1| helicase [Streptococcus parasanguinis ATCC 903]
          Length = 654

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 7/125 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRI--LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  +V+ +  +I+     G ++  L+   +K+ A DL   L ++    R +  E     
Sbjct: 430 TSEERVKHIIKKIDFYGVSGEKVKGLMFCSSKQEAHDLASKLNQKGKHCRALTGEDNMET 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E++  L  G+ D ++ +++  EG+DIP    V +L        +S    +Q +GR  R
Sbjct: 490 RNEVVAQLEKGELDYILTVDIFNEGIDIPSVNQVVMLRNT-----QSSIVFVQQLGRGLR 544

Query: 681 NVNSK 685
              SK
Sbjct: 545 KHESK 549


>gi|313159822|gb|EFR59178.1| transcription-repair coupling factor [Alistipes sp. HGB5]
          Length = 1108

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 79/185 (42%), Gaps = 16/185 (8%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY-VPRTDTYIEKESSINEQI 255
           + +A ++  AA L ++F N      V +F S   Y +  AY        +++ +++N   
Sbjct: 57  VFVAEDRDAAAYLMNDFYNLLDEKQVYFFPS--SYKRSVAYGAEDAQGVVQRTAAMN--- 111

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
                 A +   +    +     +    +   E+  +  + +K+GDS+    L  +LV  
Sbjct: 112 ------AVKGFTKGYLIVCTYPEALAERVADAETLRRDTIAVKVGDSISIAVLEDALVDA 165

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF---YPLTGQKIR 372
            + R D     G + V G  +++F S  E   +R+  FG++++ I  F     L+  K+ 
Sbjct: 166 NFTRVDFVYEPGQYSVRGGIVDVF-SFSESKPYRIDFFGDEVDSIRRFNISSQLSADKLD 224

Query: 373 NVETI 377
            VE I
Sbjct: 225 RVEII 229



 Score = 37.7 bits (86), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H ++   +   +I D   G+FDVLV   ++  G+DIP    + + +A   G    
Sbjct: 788 RVGVGHGKMPAEKLERLIMDFIYGEFDVLVATTIVENGIDIPNANTIIVNNAQNFGL--- 844

Query: 668 KTSLIQTIGRAARNVNSKVILY 689
            + L Q  GR  R+ N K   Y
Sbjct: 845 -SDLHQLRGRVGRS-NQKAYCY 864


>gi|313123080|ref|YP_004033339.1| transcription-repair coupling factor (superfamily ii helicase)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279643|gb|ADQ60362.1| Transcription-repair coupling factor (Superfamily II helicase)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 1158

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 61/321 (19%), Positives = 125/321 (38%), Gaps = 33/321 (10%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           SR K  LL GV        +   +  + +P +++  N+  A + Y++       + +E F
Sbjct: 21  SRIKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERYNDLSRLLADDELELF 80

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
               +          T T +     ++ +I          L  R   ++ +     Y + 
Sbjct: 81  ALDGNL--------ATQTAVSSPDELSSRI----QCLNLLLSGRPGVVIATPQGLQYPLS 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +   + +      +GD +   +L   L +  Y R+++ +  G F + GD ++++P   E 
Sbjct: 129 APALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRES 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+  FG++I+ I  F  LT Q  R++E +          P  T+  A  ++      
Sbjct: 189 -PLRLEFFGDEIDTIKTF-DLTSQ--RSLEEL----------PEATVPAASDHV-----F 229

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
              +L++ GR L+    ++         E   + Q  ++  RYL    P     +L +Y+
Sbjct: 230 TAEDLDRAGRELDGDLPKEAAASLAIAQEALANGQLPDDCDRYLDYLLP--ESFSLLDYL 287

Query: 466 PEDSLLFVDESHVTIPQISGM 486
           P   LL  ++  +    +  M
Sbjct: 288 PAKGLLLFNDWQLIAESVKNM 308


>gi|308271395|emb|CBX28003.1| hypothetical protein N47_G33270 [uncultured Desulfobacterium sp.]
          Length = 1171

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 64/321 (19%), Positives = 133/321 (41%), Gaps = 39/321 (12%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           LLK    +E+     G++GS K +   ++    + P +V+ P+   +A   ++   FF  
Sbjct: 14  LLKSFSEKEQGIDFEGLSGSKKAYIAFRLYIKHKLPTLVIVPSVKESADFVNDLNYFFNG 73

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE-QIDRMRHSATRSLLERNDCIVVSSV 278
             +           P    P+ +   +  S  NE   DR+R +  +++  +   I+V++ 
Sbjct: 74  QNI-----------PVMIFPQYNVSSKSVSYHNEIASDRIR-TLYKAIESQIPPIIVTTP 121

Query: 279 SCIYG----IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
             + G       + ++S++I +   G+ +E+   ++ LV   Y R  I    G + + G 
Sbjct: 122 GALAGRLIPKNELLNFSELIAE---GEEIERDRFIAKLVAGGYCRTAIVEEPGDYCIRGG 178

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I+IF     D   R+ +  + IE I  F   + + ++ V    I      +     LN 
Sbjct: 179 IIDIFTPLYPD-PLRIDLSDDFIESIRFFSAASQRSLKPVHEAIILPAKEAIIKANDLNY 237

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
            + +I+E      I + K   +++              ++  G    IE  +  +  +  
Sbjct: 238 IVSHIRELASGLNIPVTKVRTIIDK-------------IKNEGVLPEIEGLNCLVYSK-- 282

Query: 455 GEPPPTLFEYIPEDSLLFVDE 475
              P + F+YIP++S++ +DE
Sbjct: 283 ---PDSFFDYIPKNSIIIMDE 300


>gi|300867169|ref|ZP_07111832.1| type III restriction enzyme, res subunit [Oscillatoria sp. PCC
           6506]
 gi|300334783|emb|CBN56998.1| type III restriction enzyme, res subunit [Oscillatoria sp. PCC
           6506]
          Length = 512

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 16/127 (12%)

Query: 574 EINLAAQQGLRILLTVLTKR--------MAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           EI+L     +R+L  +L +          A++ T Y   +   +  +  +    ER +I+
Sbjct: 315 EISLCTDGKIRVLAGLLAQHYPHRTLIFTADNATVYRVSQEFLIPSITHQTPVKERHQIL 374

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R G+++ L+  ++L EG+D+P+  +  IL         S+   IQ +GR  R  N +
Sbjct: 375 TQFRSGEYNTLIASHVLNEGVDVPDARIAIILSGTG-----SEREYIQRLGRVLRKGNDE 429

Query: 686 ---VILY 689
               ILY
Sbjct: 430 NKLAILY 436


>gi|297544787|ref|YP_003677089.1| primosomal protein N' [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842562|gb|ADH61078.1| primosomal protein N' [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 732

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEV--KTLERIEIIRDLRLGKFDVLVGINLLRE 644
           L + T+R+  D+ ++    N RV  M  +   K     +I  D R GK D+L+G  ++ +
Sbjct: 487 LGIGTERVENDIKKFF--PNARVLRMDVDTTRKKGSHEKIFYDFRNGKADILIGTQMISK 544

Query: 645 GLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           G DIP   LV ++ AD    L       R+   L Q  GRA R
Sbjct: 545 GFDIPNVTLVGVILADITLNLPDFRSSERTFQLLTQVAGRAGR 587


>gi|171778471|ref|ZP_02919629.1| hypothetical protein STRINF_00480 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282872|gb|EDT48296.1| hypothetical protein STRINF_00480 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 989

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 54/98 (55%), Gaps = 7/98 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           +++ A++L E +Y +  +     +H+ ++  +R E ++ ++ GK  ++V +++  EG+DI
Sbjct: 275 SRKRADELYEKIYSQYKKYNPVVIHTGIRPTQRKENLQQVKSGKAKIVVCVDMFGEGIDI 334

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           P   + AI D       RS    +Q IGR AR   +K+
Sbjct: 335 PTLKIAAIHDK-----YRSLPITLQFIGRFARTSGNKL 367


>gi|326920976|ref|XP_003206741.1| PREDICTED: endoribonuclease Dicer-like [Meleagris gallopavo]
          Length = 1921

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           EV+  ++ E++R  R  + ++L+  +++ EG+DIP+C LV   D   E       S +Q+
Sbjct: 495 EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE-----YRSYVQS 549

Query: 675 IGRAARNVNSKVILYADT 692
            GR AR   S  I+ ADT
Sbjct: 550 KGR-ARAPISNYIMLADT 566


>gi|167772295|ref|ZP_02444348.1| hypothetical protein ANACOL_03672 [Anaerotruncus colihominis DSM
           17241]
 gi|167665398|gb|EDS09528.1| hypothetical protein ANACOL_03672 [Anaerotruncus colihominis DSM
           17241]
          Length = 816

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+++ ++L E   +  +    M + +      +   D   GK+D+++G  ++ +GLD P 
Sbjct: 571 TQKVEQELGELFPDARVLRMDMDTTMARFSHEKHFADFSAGKYDIIIGTQMVAKGLDFPN 630

Query: 651 CGLVAILDADK-------EGFLRSKTSLIQTIGRAAR 680
             LV +L AD          F R+ +   Q +GR+ R
Sbjct: 631 VTLVGVLSADSALYAQDYRSFERAFSLFTQVVGRSGR 667


>gi|47827092|dbj|BAD21122.1| ATP-dependent RNA helicase [Hordeum vulgare subsp. vulgare]
 gi|326532610|dbj|BAK05234.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 764

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 13/134 (9%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+   S RT + D+   I + A+ G  I+ T  TKR A++++  L   +I    +H ++ 
Sbjct: 318 PLTTTSKRTILSDL---ITVYAKGGKTIVFT-RTKRDADEVSLALTT-SIASEALHGDIS 372

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI--LDADKEGFL-RSKTSLIQT 674
             +R   +   R GKF VLV  ++   GLDIP   L+    L  D E F+ RS  +    
Sbjct: 373 QHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRT---- 428

Query: 675 IGRAARNVNSKVIL 688
            GRA +  N+ ++ 
Sbjct: 429 -GRAGKAGNAILMF 441


>gi|305666665|ref|YP_003862952.1| ATP-dependent DNA helicase recQ [Maribacter sp. HTCC2170]
 gi|88707470|gb|EAQ99714.1| ATP-dependent DNA helicase recQ [Maribacter sp. HTCC2170]
          Length = 632

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+RMA+DLT YL        Y H  +   E+ E +      K + +V  N    G
Sbjct: 231 IVYVRTRRMAQDLTNYLNANKCSASYFHGGLSKEEKKERLNKWLDNKTNTMVATNAFGMG 290

Query: 646 LDIPECGLVA---ILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYAD 691
           +D P+  LV    I D  +  F        Q  GRA RN N +K IL  +
Sbjct: 291 IDKPDVELVVHYQIPDCIENYF--------QEAGRAGRNGNPAKAILLTN 332


>gi|84393833|ref|ZP_00992578.1| helicase-related protein [Vibrio splendidus 12B01]
 gi|84375528|gb|EAP92430.1| helicase-related protein [Vibrio splendidus 12B01]
          Length = 580

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 25/161 (15%)

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L + GF  P+ M + P+   +++ L+P      A+ G ++ E    +++EQ  R T    
Sbjct: 189 LLDEGFLTPARMIDAPVLSYDFSQLKP------ASTGRYK-EAELDMVIEQSKRAT---- 237

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
                         + D+I   A+  L I++   T R A+++   L E    +  +  + 
Sbjct: 238 ------------PQIVDQIIELAKDKLGIMVFAATVRHAQEILGLLPEGESSI--VIGDT 283

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
            TLER +II D +  K   LV +++L  G D P   L+AIL
Sbjct: 284 PTLERDQIISDFKERKIKFLVNVSVLTTGFDAPHVDLIAIL 324


>gi|330982230|gb|EGH80333.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 1150

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 55/277 (19%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           A +L  E K F P   V +F  +    YD + P       D   ++ +S+  ++  + H 
Sbjct: 51  AERLEQELKFFAPTLPVLHFPDWETLPYDLFSPH-----QDIISQRIASLY-RLPELEHG 104

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
                      +VV   + ++ +   +      + L +G  ++ + + + L    Y+  D
Sbjct: 105 ----------VLVVPITTALHRLAPTKFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVD 154

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
                G F V G  I++FP     + +R+ +F ++IE +  F P T + I  VE++++  
Sbjct: 155 TVYEHGEFTVRGALIDLFPMG-SKLPFRIDLFDDEIETLRTFDPDTQRSIDKVESVRL-- 211

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD------LEMLET 435
                                L  R   L+KE       R  +R   D       + L +
Sbjct: 212 ---------------------LPAREFPLQKEEVTRFKARFRERFDVDFRRSPIFQDLSS 250

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             +   IE Y          E   TLF+Y+P+D+ +F
Sbjct: 251 GITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF 282



 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VL+   ++  G+D+P  
Sbjct: 826 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 884 NTIIIERADKFGL----AQLHQLRGRVGRS 909


>gi|330869865|gb|EGH04574.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330986245|gb|EGH84348.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331013175|gb|EGH93231.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 1150

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 121/307 (39%), Gaps = 55/307 (17%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +   +   
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELEHG----------VLVVPITTALHRLAPTKFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPFRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P T + I  VE++++                       L  R   L+
Sbjct: 184 LFDDEIETLRTFDPDTQRSIDKVESVRL-----------------------LPAREFPLQ 220

Query: 412 KEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           KE       R  +R   D       + L +  +   IE Y          E   TLF+Y+
Sbjct: 221 KEEVTRFKARFRERFDVDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYL 275

Query: 466 PEDSLLF 472
           P+D+ +F
Sbjct: 276 PQDTQVF 282



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VL+   ++  G+D+P  
Sbjct: 826 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 884 NTIIIERADKFGL----AQLHQLRGRVGRS 909


>gi|322703781|gb|EFY95385.1| ATP-dependent RNA helicase ded-1 [Metarhizium anisopliae ARSEF 23]
          Length = 665

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 5/110 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L    G   L+ V TKRMA+ L+++L  ++     +H +    ER   +   R G+  +L
Sbjct: 430 LHTHAGGLTLIFVETKRMADSLSDFLINQSFPATSIHGDRTQRERERALEFFRNGRCPIL 489

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 490 VATAVAARGLDIPNVTHVINYDLPTD-----VDDYVHRIGRTGRAGNTGI 534


>gi|322701321|gb|EFY93071.1| DEAD/DEAH box RNA helicase [Metarhizium acridum CQMa 102]
          Length = 631

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 36/67 (53%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G+R ++   ++R  ++L ++LY   + V  MHSE    ER   +R  R G+  +L+   +
Sbjct: 363 GVRTIIFANSRREVDNLDDFLYNMGLPVTSMHSERTQKEREAALRSFRAGQAPILIATGV 422

Query: 642 LREGLDI 648
              G+D+
Sbjct: 423 TARGIDV 429


>gi|320335085|ref|YP_004171796.1| DEAD/DEAH box helicase domain-containing protein [Deinococcus
           maricopensis DSM 21211]
 gi|319756374|gb|ADV68131.1| DEAD/DEAH box helicase domain protein [Deinococcus maricopensis DSM
           21211]
          Length = 604

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 9/111 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TKR  ++L   L  R +    +H ++   +R   +   R G+  VLV  ++  
Sbjct: 242 RAIVFTRTKREVDELAMELIHRGLEAEALHGDLAQSQRERALGSFRAGRVRVLVATDVAA 301

Query: 644 EGLDIPECGLVAI--LDADKEGFL-RSKTSLIQTIGRAARNVNSKVILYAD 691
            GLDIPE  LV    L  D E ++ RS  +     GRA R   + +++Y +
Sbjct: 302 RGLDIPEIDLVVQYHLPQDPESYVHRSGRT-----GRAGRT-GTAIVMYGE 346


>gi|224369718|ref|YP_002603882.1| UvrB2 [Desulfobacterium autotrophicum HRM2]
 gi|223692435|gb|ACN15718.1| UvrB2 [Desulfobacterium autotrophicum HRM2]
          Length = 37

 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/34 (55%), Positives = 25/34 (73%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180
           Y P+GD P AI  L++G+ + EK Q+LLGVT SG
Sbjct: 4   YGPAGDHPKAIDYLVRGVKADEKYQVLLGVTRSG 37


>gi|325922280|ref|ZP_08184061.1| ATP-dependent DNA helicase RecG [Xanthomonas gardneri ATCC 19865]
 gi|325547233|gb|EGD18306.1| ATP-dependent DNA helicase RecG [Xanthomonas gardneri ATCC 19865]
          Length = 714

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +K  E+ + + D + G  D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 538 GVRVALVHGRMKPAEKQKAMLDFKQGHTDLLVATTVIEVGVDVPNASLMIIENAERLGL- 596

Query: 666 RSKTSLIQTIGRAARN--VNSKVILY 689
                L Q  GR  R    +S V+LY
Sbjct: 597 ---AQLHQLRGRVGRGAAASSCVLLY 619


>gi|324989584|gb|EGC21530.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK353]
          Length = 1167

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 14/227 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E   +  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F++  D    E      +    +  ++N  ID           +++  
Sbjct: 71  LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDH----------QKSGI 119

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V +  +    +     +    + L +G   +   L+  L +  YK+    + +G + + 
Sbjct: 120 LVTNVAASKLLLPDPIDFKTTNINLIVGQEYDLNNLVKMLSRTGYKKVSQVLSQGEYSLR 179

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I
Sbjct: 180 GDILDIFERSAE-FPYRLEFFGDEIDGIRIFNPENQTSIENIESILI 225



 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  +     + D   G++D+LV   ++  G+DIP    + + +AD  G     
Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL---- 908

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 909 STLYQLRGRVGR---SNRIAYA 927


>gi|307264798|ref|ZP_07546360.1| primosomal protein N' [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920056|gb|EFN50268.1| primosomal protein N' [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 732

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEV--KTLERIEIIRDLRLGKFDVLVGINLLRE 644
           L + T+R+  D+ ++    N RV  M  +   K     +I  D R GK D+L+G  ++ +
Sbjct: 487 LGIGTERVENDIKKFF--PNARVLRMDVDTTRKKGSHEKIFYDFRNGKADILIGTQMISK 544

Query: 645 GLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           G DIP   LV ++ AD    L       R+   L Q  GRA R
Sbjct: 545 GFDIPNVTLVGVILADITLNLPDFRSSERTFQLLTQVAGRAGR 587


>gi|302667761|ref|XP_003025461.1| hypothetical protein TRV_00401 [Trichophyton verrucosum HKI 0517]
 gi|291189571|gb|EFE44850.1| hypothetical protein TRV_00401 [Trichophyton verrucosum HKI 0517]
          Length = 455

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 271 TRRKVDWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 330

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 331 VSLVINYDLPANRENYI 347


>gi|221486494|gb|EEE24755.1| DEAD box ATP-dependent RNA helicase, putative [Toxoplasma gondii
           GT1]
          Length = 1190

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 67/139 (48%), Gaps = 7/139 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           V  E+  A +   + ++ V T++  E L ++ + ++ RV  +H+ ++  +R   +   R 
Sbjct: 674 VASELLAAEEDTHKCIVFVETQQEVEQLAQHPFLQSWRVAPLHAGLEQEQRDTNLSRFRS 733

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVIL 688
           G+  VL+  +++  GLD+P   LV  L         + ++ I   GRA R  +V   V+L
Sbjct: 734 GEAPVLIATDVVARGLDVPAVTLVVHLHPPV-----NPSTYIHRSGRAGRGGHVGDSVVL 788

Query: 689 YADTITKSIQLAIDETTRR 707
           Y+ +    +   + +T  R
Sbjct: 789 YSSSERGKLAEVVQQTRTR 807


>gi|212537071|ref|XP_002148691.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210068433|gb|EEA22524.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 666

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTE   +  I  RY+ +      R E +   + G++ VL+   L  EG DIP    V + 
Sbjct: 319 LTEAFRDNGIDARYITANTPRQTRNEELEAFKKGEYPVLLNCGLFTEGTDIPNIDCVVLA 378

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
                   RSK+ LIQ IGR  R
Sbjct: 379 RP-----TRSKSLLIQMIGRGLR 396


>gi|317026087|ref|XP_001388951.2| ATP-dependent DNA helicase mph1 [Aspergillus niger CBS 513.88]
 gi|189082535|sp|A2Q8R2|MPH1_ASPNC RecName: Full=ATP-dependent DNA helicase mph1
          Length = 1124

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 15/119 (12%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYL--YERNIR--VRYMHSEVKTLE------RIEIIRDLR 629
           Q   R+++ V  +  AE++T  L  YE  IR  V    S  K  E      +++I++  +
Sbjct: 690 QPATRVMIFVHFRDSAEEVTRVLKRYEPMIRPHVFVGQSSAKGSEGMGQKTQLDIVQKFK 749

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G ++ +V  ++  EGLDI E  L+   D+       S   ++Q +GR  R  + K+ L
Sbjct: 750 KGTYNTIVATSIGEEGLDIGEVDLIVCYDSSA-----SPIRMLQRMGRTGRKRSGKITL 803


>gi|156717646|ref|NP_001096363.1| eukaryotic translation initiation factor 4A2 [Xenopus (Silurana)
           tropicalis]
 gi|134024000|gb|AAI35872.1| LOC100124955 protein [Xenopus (Silurana) tropicalis]
          Length = 265

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 187 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 246

Query: 651 CGLVAILD--ADKEGFLRS 667
             LV   D   ++E ++ S
Sbjct: 247 VSLVINYDLPTNRENYIHS 265


>gi|14042692|dbj|BAB55355.1| unnamed protein product [Homo sapiens]
          Length = 622

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 495 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 543

Query: 705 TRRREKQLEHNKKHNINP 722
                K L+   K  + P
Sbjct: 544 VLMDLKALQLEAKQKVPP 561


>gi|86130975|ref|ZP_01049574.1| transcription-repair coupling factor [Dokdonia donghaensis MED134]
 gi|85818386|gb|EAQ39546.1| transcription-repair coupling factor [Dokdonia donghaensis MED134]
          Length = 1159

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 53/266 (19%), Positives = 115/266 (43%), Gaps = 23/266 (8%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           ++F  +++      Q   + +L + I   +++Q   G+TGS  +F ++++ E  +RP ++
Sbjct: 25  SYFLSKSELSQHFAQSLPLQKLGEAIAHSQRIQAK-GLTGSSLSFAVSQLFEGRERPVLL 83

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN-----E 253
           +  +K  AA   ++ +       V ++        P +Y  R    IE+  + N     E
Sbjct: 84  ILNDKEEAAYYLNDLEALRKEENVLFY--------PGSY--RRPYQIEETDNANILLRAE 133

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
            ++R+      +L      IV    +    + + +   +  +++ + D +    +   L 
Sbjct: 134 VLNRVNSRKKPAL------IVTYPDALFEKVVTRKELDRQTLKVTVNDKLSLDFINEMLF 187

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
           + ++KR D     G F V G  +++F S   D  +R+  FG++++ I  F   +   +  
Sbjct: 188 EYRFKRVDFVTEPGEFSVRGGIVDVF-SFSHDRPYRIEFFGDEVDSIRTFDVESQLSLDQ 246

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYI 399
           V+ I I  N        T  + +KYI
Sbjct: 247 VKKISIMPNVENKALEETRASFLKYI 272



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 14/161 (8%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLT----VLTKRMAEDLTEYLYERNIRVRYMH 613
           P+E    R   E + D ++   Q+G ++          K +A  +   + +  + V +  
Sbjct: 767 PIESNVVRFSEEVIRDAVSYEIQRGGQVFFIHNRIENIKEVAGLIQRLVPDAKVGVGHGQ 826

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            E K LE   +      G+FDVLV   ++  GLD+P    + I +A+  G     + L Q
Sbjct: 827 MEGKALEAKML--SFMNGEFDVLVSTTIIESGLDVPNANTIFINNANNFGL----SDLHQ 880

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
             GR  R+ N K   Y  T   S+   + E  R+R + LE 
Sbjct: 881 MRGRVGRS-NKKAFCYFITPPYSV---MTEDARKRIQALEQ 917


>gi|325288509|ref|YP_004264690.1| type III restriction protein res subunit [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963910|gb|ADY54689.1| type III restriction protein res subunit [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 537

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 30/203 (14%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           + ++  T+ L E+  R   ++ E    ER+  ++D   G +DVL    LL EG D P   
Sbjct: 242 KTSQKFTQILREKGFRAAEVNGESADRERL--LKDFDAGSYDVLCNSMLLTEGWDCPSVD 299

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
            + +L   K      ++   Q +GR  R    K  L          L +D        +L
Sbjct: 300 CIVVLRPTK-----IRSLYCQMVGRGTRLFPGKEYL----------LLLDFLWHTERHEL 344

Query: 713 EHNKKHNINPQSVKEKIMEVID----PILLEDA---ATTNISIDAQQLSLSKKKGKAHLK 765
            H        + V +K+ E I+    P+ LE A   A+ ++ I A++ +L+K+     L+
Sbjct: 345 CHPAHLICESEEVAKKMTENIEEAGCPVDLEAAEKQASEDV-IAAREEALAKQ-----LQ 398

Query: 766 SLRKQMHLAADNLNFEEAARIRD 788
            +R +     D L FE + +  D
Sbjct: 399 EMRNRKRKLVDPLQFEMSIQAED 421


>gi|317129245|ref|YP_004095527.1| ATP-dependent DNA helicase RecG [Bacillus cellulosilyticus DSM
           2522]
 gi|315474193|gb|ADU30796.1| ATP-dependent DNA helicase RecG [Bacillus cellulosilyticus DSM
           2522]
          Length = 678

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           ++  I    Q  L +   +L ++  E L + L    I+V+ +    K  ER  I+ +LR 
Sbjct: 295 LFAVIQAGLQGALMVPTEILAEQHKESLVDLLEPFGIKVQLLTGSTKVKERRAILEELRE 354

Query: 631 GKFDVLVGIN-LLREGLDIPECGLV 654
           GK D+++G + L++EG+D    GLV
Sbjct: 355 GKIDIILGTHALIQEGVDFKNLGLV 379


>gi|268318827|ref|YP_003292483.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
           FI9785]
 gi|262397202|emb|CAX66216.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
           FI9785]
          Length = 484

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++   +R+ +++  R GK D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVSHVYNYD---IPQDPDSYVHRIGRTGR 332


>gi|237731096|ref|ZP_04561577.1| transcription-repair coupling factor [Citrobacter sp. 30_2]
 gi|226906635|gb|EEH92553.1| transcription-repair coupling factor [Citrobacter sp. 30_2]
          Length = 1148

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 125/303 (41%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAEHHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPAMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L   L    Y+  D  +  G +   G  +++FP   E + +
Sbjct: 130 --------MKKGQRLSRDALREQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE-LPY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  V+ I +     +    PT  TA++  + + +    
Sbjct: 181 RLDFFDDEIDSLRLFDTDTQRTLEEVDAINLLPAHEF----PTDKTAIELFRSQWR-DTF 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E+++     +A+ + Q++        + G+  +   Y + L      EP P LF Y P +
Sbjct: 236 EVKR-----DAEHIYQQV--------SKGTLPAGIEYWQPLFF---SEPLPPLFSYFPAN 279

Query: 469 SLL 471
           +LL
Sbjct: 280 TLL 282


>gi|225023458|ref|ZP_03712650.1| hypothetical protein EIKCOROL_00316 [Eikenella corrodens ATCC
           23834]
 gi|224943807|gb|EEG25016.1| hypothetical protein EIKCOROL_00316 [Eikenella corrodens ATCC
           23834]
          Length = 533

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 6/89 (6%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           + +  +H  +K+ E+  ++ +   G+  VLV   ++  G+D+P   L+ I  A++ G   
Sbjct: 358 LTIGLVHGRMKSAEKATVMAEFAAGRIHVLVATTVIEVGVDVPNAALMVIEHAERMGL-- 415

Query: 667 SKTSLIQTIGRAARN--VNSKVILYADTI 693
             + L Q  GR  R   V+S V+L+A+ +
Sbjct: 416 --SQLHQLRGRVGRGAAVSSCVLLFAEPL 442


>gi|169602158|ref|XP_001794501.1| hypothetical protein SNOG_03958 [Phaeosphaeria nodorum SN15]
 gi|160706094|gb|EAT89163.2| hypothetical protein SNOG_03958 [Phaeosphaeria nodorum SN15]
          Length = 623

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L  +      +H +    ER + +   R G+  +LV   +   G
Sbjct: 391 LIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRSGRCPILVATAVAARG 450

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 451 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 486


>gi|149065925|gb|EDM15798.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_b [Rattus
           norvegicus]
          Length = 523

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 205 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 264

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N
Sbjct: 265 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN 306


>gi|154342919|ref|XP_001567405.1| ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134064737|emb|CAM42842.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 604

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   QG R+L+ V  KR A+ L  YL +  I    +H +    ER E +   + G   VL
Sbjct: 374 LKEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCRVL 433

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLDIP   +V   D        +    +  IGR  R
Sbjct: 434 VATDVASRGLDIPNVAVVVQYD-----LPSNIDDYVHRIGRTGR 472


>gi|111023319|ref|YP_706291.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
 gi|110822849|gb|ABG98133.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
          Length = 555

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ + + L ER   V  +H ++  + R + ++  R GK DVLV  ++   G+DI
Sbjct: 299 TKRTAQKVADDLAERGFSVGSVHGDLNQVAREKALKAFRTGKIDVLVATDVAARGIDI 356


>gi|94957752|ref|NP_001035555.1| endoribonuclease Dicer [Gallus gallus]
 gi|257051054|sp|Q25BN1|DICER_CHICK RecName: Full=Endoribonuclease Dicer
 gi|90074858|dbj|BAE87103.1| Dicer protein [Gallus gallus]
          Length = 1921

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           EV+  ++ E++R  R  + ++L+  +++ EG+DIP+C LV   D   E       S +Q+
Sbjct: 495 EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE-----YRSYVQS 549

Query: 675 IGRAARNVNSKVILYADT 692
            GR AR   S  I+ ADT
Sbjct: 550 KGR-ARAPISNYIMLADT 566


>gi|37519594|ref|NP_922971.1| primosome assembly protein PriA [Gloeobacter violaceus PCC 7421]
 gi|35210585|dbj|BAC87966.1| primosomal protein N' [Gloeobacter violaceus PCC 7421]
          Length = 809

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 14/109 (12%)

Query: 591 TKRMAEDLTE-YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+R+A  L+E +   R +R     +  K   R +I+     G+ DVLVG  +L +GLD+P
Sbjct: 572 TQRIAAQLSEQFPTLRVLRFDRDTTARKDAHR-QILEQFGRGEADVLVGTQMLTKGLDLP 630

Query: 650 ECGLVAILDADKEGFL---------RSKTSLIQTIGRAARNVN-SKVIL 688
           +  LV IL AD  G L         R+   L Q  GRA R     +VIL
Sbjct: 631 QVTLVGILAAD--GLLNLPDFRASERAFQLLTQVAGRAGRGSEPGRVIL 677


>gi|326389547|ref|ZP_08211114.1| primosomal protein N' [Thermoanaerobacter ethanolicus JW 200]
 gi|325994552|gb|EGD52977.1| primosomal protein N' [Thermoanaerobacter ethanolicus JW 200]
          Length = 732

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEV--KTLERIEIIRDLRLGKFDVLVGINLLRE 644
           L + T+R+  D+ ++    N RV  M  +   K     +I  D R GK D+L+G  ++ +
Sbjct: 487 LGIGTERVENDIKKFF--PNARVLRMDVDTTRKKGSHEKIFYDFRNGKADILIGTQMISK 544

Query: 645 GLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           G DIP   LV ++ AD    L       R+   L Q  GRA R
Sbjct: 545 GFDIPNVTLVGVILADITLNLPDFRSSERTFQLLTQVAGRAGR 587


>gi|302184811|ref|ZP_07261484.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           syringae 642]
          Length = 1150

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 55/277 (19%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           A +L  E K F P   V +F  +    YD + P       D   ++ +S+  ++  + H 
Sbjct: 51  AERLEQELKFFAPTLPVLHFPDWETLPYDLFSPH-----QDIISQRIASLY-RLPELEHG 104

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
                      +VV   + ++ +   +      + L +G  ++ + + + L    Y+  D
Sbjct: 105 ----------VLVVPITTALHRLAPTKFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVD 154

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
                G F V G  I++FP     + +R+ +F ++IE +  F P T + I  VE++++  
Sbjct: 155 TVYEHGEFTVRGALIDLFPMG-SKLPFRIDLFDDEIETLRTFDPDTQRSIDKVESVRL-- 211

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD------LEMLET 435
                                L  R   L+KE       R  +R   D       + L +
Sbjct: 212 ---------------------LPAREFPLQKEEVTRFKARFRERFDVDFRRSPIFQDLSS 250

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             +   IE Y          E   TLF+Y+P+D+ +F
Sbjct: 251 GITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF 282



 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VL+   ++  G+D+P  
Sbjct: 826 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 884 NTIIIERADKFGL----AQLHQLRGRVGRS 909


>gi|226480840|emb|CAX73517.1| ATP-dependent RNA helicase DDX3X [Schistosoma japonicum]
          Length = 637

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 4/111 (3%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++ G   L+ V TKR A+ L  YLY +  +V  +H +    +R   +   R G+  VLV 
Sbjct: 428 SEAGTLTLVFVETKRGADALENYLYSQKFQVASIHGDRTQEDRELALSCFRSGRTPVLVA 487

Query: 639 INLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
             +   GLDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 488 TAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDK 538


>gi|237710076|ref|ZP_04540557.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|237723636|ref|ZP_04554117.1| ATP-dependent RNA helicase [Bacteroides sp. D4]
 gi|265753725|ref|ZP_06089080.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
 gi|229437984|gb|EEO48061.1| ATP-dependent RNA helicase [Bacteroides dorei 5_1_36/D4]
 gi|229456169|gb|EEO61890.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|263235439|gb|EEZ20963.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
          Length = 423

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 9/99 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   +++T+      + V  MHS+++  +R +I+R+ + G+ ++L+  +++ 
Sbjct: 246 RVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRINILIATDIVS 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            G+DI +  LV   D   D E +       +  IGR AR
Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTAR 337


>gi|224054908|ref|XP_002194080.1| PREDICTED: interferon induced with helicase C domain 1 [Taeniopygia
           guttata]
          Length = 1073

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 44/159 (27%)

Query: 604 ERNIRVRYM-----HSEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E  I+  Y+      SE+K +   E+ E+I   R G  ++L+   +  EGLDI EC +V 
Sbjct: 791 EVGIKAHYLIGSGHKSEMKPMTQNEQREVIDKFRCGNVNLLIATTVAEEGLDIKECNIVI 850

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK----- 710
                + G + ++ +++Q  GRA           AD  T ++ ++ D     RE      
Sbjct: 851 -----RYGLVTNEIAMVQARGRA----------RADESTYALVVSSDSGAVERESVNIYR 895

Query: 711 ---------------QLEH-NKKHNINPQSVKEKIMEVI 733
                          Q E+ NK HN   QS+ EK M+V+
Sbjct: 896 EKMMYKAIQRVQKMPQEEYLNKIHNFQLQSIVEKQMKVM 934


>gi|84998580|ref|XP_954011.1| eukaryotic translation initiation factor [Theileria annulata]
 gi|65305009|emb|CAI73334.1| eukaryotic translation initiation factor, putative [Theileria
           annulata]
          Length = 394

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   + L + + + N  V  MH E+   ER +I++  R G+  VL+  +L   GLD+ +
Sbjct: 269 TKEKVDWLAKKMKDANFEVSKMHGEMSQKERNDIMQRFRKGESRVLISTDLWGRGLDVQQ 328

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        S+ S I  IGR+ R
Sbjct: 329 VSLVVNYD-----LPNSRESYIHRIGRSGR 353


>gi|50726394|dbj|BAD34005.1| CAF protein-like [Oryza sativa Japonica Group]
 gi|51091635|dbj|BAD36404.1| CAF protein-like [Oryza sativa Japonica Group]
          Length = 1375

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI+   R GK  +++   +L EGLD+P C LV   D        +  S IQ+ GR AR  
Sbjct: 448 EIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSA-----TVCSFIQSRGR-ARME 501

Query: 683 NSKVIL 688
           NS  +L
Sbjct: 502 NSDYLL 507


>gi|47227923|emb|CAF97552.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 366

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 241 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 300

Query: 651 CGLV 654
             LV
Sbjct: 301 VSLV 304


>gi|314935617|ref|ZP_07842969.1| putative helicase [Staphylococcus hominis subsp. hominis C80]
 gi|313656182|gb|EFS19922.1| putative helicase [Staphylococcus hominis subsp. hominis C80]
          Length = 943

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 7/120 (5%)

Query: 563 SARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  +++ + ++ N     G  L+ L+ V  K  A ++ E L   NI  + +       +
Sbjct: 431 TSEERIKHIIEKTNYYGYSGSQLKGLIFVSRKEEATEIAEKLSLNNIPSKALIGSDTQNK 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R ++I +L  GK + +V +NL  EG+DIPE   + +L +      +S     Q +GR  R
Sbjct: 491 RTKVINELVNGKINYIVTVNLFNEGIDIPEVNQIVMLRS-----TQSSIIFTQQLGRGLR 545


>gi|297737705|emb|CBI26906.3| unnamed protein product [Vitis vinifera]
          Length = 988

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 23/165 (13%)

Query: 558 PVE---IRSARTQVEDVY----DEINLAAQQGLRILLTVLTK-------RMAEDLTEYLY 603
           PVE   I       EDVY    DE+ +  +  + I+  V+ +       R A    E + 
Sbjct: 749 PVETYTIEGCDAGFEDVYQMMLDELEVGGK--IYIVYPVIEQSEQLPQLRAASTDLETIS 806

Query: 604 ER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
            R    +   +H  +K+ E+ E +R  R G+ ++L+   ++  G+D+P+  ++ +++A++
Sbjct: 807 SRFQGYKCGLLHGRMKSDEKDEALRRFRSGETNILLSTQVIEIGVDVPDASMMVVMNAER 866

Query: 662 EGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAIDETT 705
            G       L Q  GR  R V  SK +L + T +   +L + E +
Sbjct: 867 FGI----AQLHQLRGRVGRGVRKSKCLLVSSTASGLNRLKVLENS 907


>gi|251764794|sp|Q69LX2|DCL2B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2b; AltName:
           Full=Dicer-like protein 2b; Short=OsDCL2b
          Length = 1377

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI+   R GK  +++   +L EGLD+P C LV   D        +  S IQ+ GR AR  
Sbjct: 448 EIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSA-----TVCSFIQSRGR-ARME 501

Query: 683 NSKVIL 688
           NS  +L
Sbjct: 502 NSDYLL 507


>gi|195058057|ref|XP_001995378.1| GH23128 [Drosophila grimshawi]
 gi|193899584|gb|EDV98450.1| GH23128 [Drosophila grimshawi]
          Length = 1294

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+++++ D R G  +VLV  ++  EGLD+ E  L+   D        + T  +Q IGR  
Sbjct: 476 EQLQVMGDFRGGICNVLVATSIAEEGLDVGEVDLIVCFDISSS----NPTRFVQRIGRTG 531

Query: 680 RNVNSKVILYA-----DTITKSIQLAIDETTRR 707
           R     V++         + K +  + D+T R+
Sbjct: 532 RKKQGAVVMLVTEGREQQLLKEVLASRDQTNRK 564


>gi|158530232|gb|ABW71831.1| putative RNA helicase [Phytophthora infestans]
          Length = 544

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 28/193 (14%)

Query: 518 WNCLRPTTIV----------VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           W+   P  IV          +  T GS +L   + I  +QI+    ++D   +  S +  
Sbjct: 325 WSATWPKEIVALANDFLTDFIQVTVGSLDLTANKRI--KQIVE---VMDDHQKYSSLQDH 379

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           + D+Y        +G RI++   TKR A++L+  L       + +H      ER  ++R+
Sbjct: 380 LRDIY--------EGGRIIIFCETKRGADELSRNLRNTRYICKAIHGNKSQEERDYVLRE 431

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + G+  +LV  ++   GLDI +   V   D  K     +    I  IGR AR  N    
Sbjct: 432 FKDGRTQILVATDVASRGLDIKDIRYVVNFDMPK-----NIEDYIHRIGRTARAGNKGTS 486

Query: 688 LYADTITKSIQLA 700
           +   T + + +LA
Sbjct: 487 ISFFTASNNGRLA 499


>gi|329118091|ref|ZP_08246803.1| DNA helicase RecG [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465751|gb|EGF12024.1| DNA helicase RecG [Neisseria bacilliformis ATCC BAA-1200]
          Length = 679

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E L   L E NI +  +H  +K  E+  ++ +   G+ +VLV   ++  G+D+P   L+ 
Sbjct: 495 EQLQTALPELNIGL--VHGRMKATEKATVMAEFAAGRLNVLVATTVIEVGVDVPNAALMV 552

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I  A++ G       L Q  GR  R       V+L+A+ +++
Sbjct: 553 IEHAERMGL----AQLHQLRGRVGRGAAKSVCVLLFAEPLSE 590


>gi|313887901|ref|ZP_07821580.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846067|gb|EFR33449.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 544

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKRM E L   + +R  +V  +H +++   R  +++  R G  DVL+  ++   GLD+ +
Sbjct: 249 TKRMVEALELEIAQRGYKVDSLHGDMRQSSRDNVMKKFRNGTIDVLIATDVAARGLDVSD 308

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D  ++         +  IGR AR
Sbjct: 309 IDLVFNYDLPQQA-----EYYVHRIGRTAR 333


>gi|294886917|ref|XP_002771918.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239875718|gb|EER03734.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 521

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 2/112 (1%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G ++L+   TKR A+DLT  L         +H + K  ER  ++ + + GK  +++  ++
Sbjct: 362 GSKLLIFTDTKRGADDLTRTLRMDGWPALCIHGDKKQEERDWVLHEFKSGKSPIMIATDV 421

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
              GLD+ +  +  +++ D  G +      I   GRA    N+     AD I
Sbjct: 422 ASRGLDVKD--IRHVVNYDFPGQIEDYVHRIGRTGRAGCKGNAYTFFTADKI 471


>gi|225387033|ref|ZP_03756797.1| hypothetical protein CLOSTASPAR_00783 [Clostridium asparagiforme DSM
            15981]
 gi|225046851|gb|EEG57097.1| hypothetical protein CLOSTASPAR_00783 [Clostridium asparagiforme DSM
            15981]
          Length = 1221

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 7/99 (7%)

Query: 609  VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            V + H +++  E   I+ D   G+ DVLV   ++  GLDIP    + + DAD+ G     
Sbjct: 910  VTFAHGQMREHELERIMADFINGEIDVLVSTTIIETGLDIPNANTMIVHDADRMGL---- 965

Query: 669  TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
            + L Q  GR  R+  +    YA  + K  +L  +E  +R
Sbjct: 966  SQLYQLRGRVGRSNRTS---YAFLMYKRDKLLKEEAEKR 1001


>gi|150005667|ref|YP_001300411.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
 gi|149934091|gb|ABR40789.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
          Length = 425

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 9/99 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   +++T+      + V  MHS+++  +R +I+R+ + G+ ++L+  +++ 
Sbjct: 246 RVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRINILIATDIVS 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            G+DI +  LV   D   D E +       +  IGR AR
Sbjct: 306 RGIDIDDIRLVINYDVPHDSEDY-------VHRIGRTAR 337


>gi|167037733|ref|YP_001665311.1| primosomal protein N' [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|167040395|ref|YP_001663380.1| primosomal protein N' [Thermoanaerobacter sp. X514]
 gi|300914479|ref|ZP_07131795.1| primosomal protein N' [Thermoanaerobacter sp. X561]
 gi|307724285|ref|YP_003904036.1| primosomal protein N' [Thermoanaerobacter sp. X513]
 gi|320116148|ref|YP_004186307.1| primosomal protein N' [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166854635|gb|ABY93044.1| primosomal protein N' [Thermoanaerobacter sp. X514]
 gi|166856567|gb|ABY94975.1| primosomal protein N' [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|300889414|gb|EFK84560.1| primosomal protein N' [Thermoanaerobacter sp. X561]
 gi|307581346|gb|ADN54745.1| primosomal protein N' [Thermoanaerobacter sp. X513]
 gi|319929239|gb|ADV79924.1| primosomal protein N' [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 732

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEV--KTLERIEIIRDLRLGKFDVLVGINLLRE 644
           L + T+R+  D+ ++    N RV  M  +   K     +I  D R GK D+L+G  ++ +
Sbjct: 487 LGIGTERVENDIKKFF--PNARVLRMDVDTTRKKGSHEKIFYDFRNGKADILIGTQMISK 544

Query: 645 GLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           G DIP   LV ++ AD    L       R+   L Q  GRA R
Sbjct: 545 GFDIPNVTLVGVILADITLNLPDFRSSERTFQLLTQVAGRAGR 587


>gi|319791034|ref|YP_004152674.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS]
 gi|315593497|gb|ADU34563.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
          Length = 421

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+ V T+  A+ + E LY+  +     H ++    R  I+   +  ++DV++  +L  
Sbjct: 247 RVLVFVATQHSAQIVAEKLYKNGVYAVPFHGDIAQGTRTGILAQFKESRWDVVIATDLAA 306

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+DI +  +V   D       RS T  I  IGR  R   S + +
Sbjct: 307 RGIDIAQLPVVINYD-----LPRSPTDYIHRIGRTGRAGESGLAI 346


>gi|256752268|ref|ZP_05493131.1| primosomal protein N' [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748836|gb|EEU61877.1| primosomal protein N' [Thermoanaerobacter ethanolicus CCSD1]
          Length = 732

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEV--KTLERIEIIRDLRLGKFDVLVGINLLRE 644
           L + T+R+  D+ ++    N RV  M  +   K     +I  D R GK D+L+G  ++ +
Sbjct: 487 LGIGTERVENDIKKFF--PNARVLRMDVDTTRKKGSHEKIFYDFRNGKADILIGTQMISK 544

Query: 645 GLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           G DIP   LV ++ AD    L       R+   L Q  GRA R
Sbjct: 545 GFDIPNVTLVGVILADITLNLPDFRSSERTFQLLTQVAGRAGR 587


>gi|241890101|ref|ZP_04777399.1| primosomal protein N' [Gemella haemolysans ATCC 10379]
 gi|241863723|gb|EER68107.1| primosomal protein N' [Gemella haemolysans ATCC 10379]
          Length = 787

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 15/111 (13%)

Query: 600 EYLYER--NIRVRYMHSEVKT----LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           EYLY+    +R+  M S+  +     ER+  + D +  K D+L+G  ++ +GLD P   L
Sbjct: 552 EYLYQNIPGVRITRMDSDTTSRKGAYERL--LTDFKNHKSDILLGTQMISKGLDFPNITL 609

Query: 654 VAILDADKEGFLRSKTS-------LIQTIGRAARNVNSKVILYADTITKSI 697
           V +L  D    L S  +       L+QT GRA R+     +++   I  +I
Sbjct: 610 VGVLSIDNMIALPSFKANEKLFQLLVQTAGRAGRSKKEGEVVFQTNIASNI 660



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQR---PAIVMAPNKILAAQLYSEFKNFFPHN 220
           LL GVTG+GKT    K++EA+ R    AI++ P  IL  Q+  +F+  F  N
Sbjct: 279 LLHGVTGAGKTEIYIKLVEAVIRVGKEAIILVPEIILTPQIEKKFRKVFSDN 330


>gi|297587541|ref|ZP_06946185.1| transcription-repair coupling factor [Finegoldia magna ATCC 53516]
 gi|297574230|gb|EFH92950.1| transcription-repair coupling factor [Finegoldia magna ATCC 53516]
          Length = 1168

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 128/305 (41%), Gaps = 47/305 (15%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           + +P +V+  + + A  L +E+ N    N  E+F             P  +  +    S+
Sbjct: 49  IDKPLVVIVEDNMRARNL-TEYLNDIEDNICEFF-------------PSRELNLYNAKSL 94

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ-MIVQLKIGDSVEQKELLS 310
           ++  +  R +    LL     I+V++   +    + +S ++     +K  D +  +EL  
Sbjct: 95  DDNAENQRVNVLFKLLNNEQPIIVTTFDALTKKITKKSVAKKYTFTIKDTDLINLEELQE 154

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            L   +Y+R D    +G F + G  ++IFP H      R+ +F ++I+ +  F   T + 
Sbjct: 155 KLKVLKYERVDTIESKGQFAIRGGIVDIFPVH-SRFPVRIELFDDEIDSMRFFEVSTQRS 213

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL--------IELEKEGRLLEAQRL 422
           I + + I I + S  +       + +  I++ L  R+        I+  K+    + ++L
Sbjct: 214 IEDCKFIDIISCSELIIEESKKESIINSIQKNLDKRVNHPIFGENIDNVKD----KFEKL 269

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482
            + I  DLE      SC        +LT ++      T+F+Y       F+DES + I  
Sbjct: 270 MEYIRNDLEYEIDLVSC--------FLTKKDYD----TIFDY-------FLDESIMMIED 310

Query: 483 ISGMY 487
           +S  Y
Sbjct: 311 LSRCY 315


>gi|169628250|ref|YP_001701899.1| transcription-repair coupling factor [Mycobacterium abscessus ATCC
           19977]
 gi|169240217|emb|CAM61245.1| Probable transcription-repair coupling factor (TrcF) [Mycobacterium
           abscessus]
          Length = 1216

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 8/195 (4%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L L      + F +  + +A   P +V+      A  L +E ++ +  +AV    S+
Sbjct: 31  KTGLDLTAPTCARAFVVTGMADASDAPVLVVTATTREAQDLTAELRDVY-GDAVTLLPSW 89

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
            +    E   P  DT   +   ++    R+ H    S +     +V+++V  +    S E
Sbjct: 90  -ETLPHERLSPGVDTVGARLQVLH----RLAHPED-SRMGVPLRVVITTVRSLLQPMSPE 143

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            +    V+L +G  +E   +++ LV+  Y R D+   RG F V G  +++F S   D   
Sbjct: 144 LFDLEPVELAVGAELEFDGVIARLVELAYTRVDMVAGRGEFAVRGGILDVF-SPTADHPV 202

Query: 349 RVSMFGNDIEEISEF 363
           RV  +G+++ E+  F
Sbjct: 203 RVEFWGDEVSEMRYF 217


>gi|157146181|ref|YP_001453500.1| transcription-repair coupling factor [Citrobacter koseri ATCC
           BAA-895]
 gi|157083386|gb|ABV13064.1| hypothetical protein CKO_01937 [Citrobacter koseri ATCC BAA-895]
          Length = 1148

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 125/303 (41%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHAGPIVLIAPDMQNALRLHDEVRQFTDQLVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E   +
Sbjct: 130 --------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQ-PY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  V+ I +     +    PT  TA++  + + +    
Sbjct: 181 RLDFFDDEIDSLRLFDADTQRTLEEVDAINLLPAHEF----PTDKTAIELFRSQWR-DTF 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E+++     +A+ + Q++        + G+  +   Y + L      EP P LF Y P +
Sbjct: 236 EVKR-----DAEHIYQQV--------SKGTLPAGIEYWQPLFF---NEPLPPLFSYFPAN 279

Query: 469 SLL 471
           +LL
Sbjct: 280 TLL 282


>gi|556308|gb|AAA50407.1| protein synthesis initiation factor 4A [Mus musculus]
          Length = 406

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVCAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|330973230|gb|EGH73296.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 1150

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 55/277 (19%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           A +L  E K F P   V +F  +    YD + P       D   ++ +S+  ++  + H 
Sbjct: 51  AERLEQELKFFAPTLPVLHFPDWETLPYDLFSPH-----QDIISQRIASLY-RLPELEHG 104

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
                      +VV   + ++ +   +      + L +G  ++ + + + L    Y+  D
Sbjct: 105 ----------VLVVPITTALHRLAPTKFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVD 154

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
                G F V G  I++FP     + +R+ +F ++IE +  F P T + I  VE++++  
Sbjct: 155 TVYEHGEFTVRGALIDLFPMG-SKLPFRIDLFDDEIETLRTFDPDTQRSIDKVESVRL-- 211

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD------LEMLET 435
                                L  R   L+KE       R  +R   D       + L +
Sbjct: 212 ---------------------LPAREFPLQKEEVTRFKARFRERFDVDFRRSPIFQDLSS 250

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             +   IE Y          E   TLF+Y+P+D+ +F
Sbjct: 251 GITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF 282



 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VL+   ++  G+D+P  
Sbjct: 826 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 884 NTIIIERADKFGL----AQLHQLRGRVGRS 909


>gi|328945180|gb|EGG39335.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK1087]
          Length = 1167

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 14/227 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E   +  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F++  D    E      +    +  ++N  ID           +++  
Sbjct: 71  LISLLGEDKVYTFLAD-DTPIAEFVFASQEKIFSRLDALNFLIDH----------QKSGI 119

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V +  +    +     +    + L +G   +   L+  L +  YK+    + +G + + 
Sbjct: 120 LVTNVAASKLLLPDPIDFKTTNINLIVGQEYDLNNLVKMLSRTGYKKVSQVLSQGEYSLR 179

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I
Sbjct: 180 GDILDIFERSAE-FPYRLEFFGDEIDGIRIFNPENQTSIENIESILI 225



 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  +     + D   G++D+LV   ++  G+DIP    + + +AD  G     
Sbjct: 853 IGYVHGQMSEIRLENTLLDFINGEYDILVTTTIIETGVDIPNANTLFVENADHMGL---- 908

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 909 STLYQLRGRVGR---SNRIAYA 927


>gi|322494127|emb|CBZ29424.1| putative ATP-dependent RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 622

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   QG R+L+ V  KR A+ L  YL +  I    +H +    ER E +   + G   VL
Sbjct: 390 LKEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCRVL 449

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLDIP   +V   D        +    +  IGR  R
Sbjct: 450 VATDVASRGLDIPNVAVVVQYD-----LPSNIDDYVHRIGRTGR 488


>gi|320324788|gb|EFW80860.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329153|gb|EFW85150.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 1150

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 55/277 (19%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           A +L  E K F P   V +F  +    YD + P       D   ++ +S+  ++  + H 
Sbjct: 51  AERLEQELKFFAPTLPVLHFPDWETLPYDLFSPH-----QDIISQRIASLY-RLPELEHG 104

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
                      +VV   + ++ +   +      + L +G  ++ + + + L    Y+  D
Sbjct: 105 ----------VLVVPITTALHRLAPTKFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVD 154

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
                G F V G  I++FP     + +R+ +F ++IE +  F P T + I  VE++++  
Sbjct: 155 TVYEHGEFTVRGALIDLFPMG-SKLPFRIDLFDDEIETLRTFDPDTQRSIDKVESVRL-- 211

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD------LEMLET 435
                                L  R   L+KE       R  +R   D       + L +
Sbjct: 212 ---------------------LPAREFPLQKEEVTRFKARFRERFDVDFRRSPIFQDLSS 250

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             +   IE Y          E   TLF+Y+P+D+ +F
Sbjct: 251 GITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF 282



 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VL+   ++  G+D+P  
Sbjct: 826 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 884 NTIIIERADKFGL----AQLHQLRGRVGRS 909


>gi|308069664|ref|YP_003871269.1| ATP-dependent DNA helicase recG [Paenibacillus polymyxa E681]
 gi|305858943|gb|ADM70731.1| ATP-dependent DNA helicase recG [Paenibacillus polymyxa E681]
          Length = 695

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H  +   E+ E++R     +  +LV   ++  G+D+P   L+ I+DAD+ G    
Sbjct: 516 RVGLLHGRMTPAEKEEVMRSFYANEVQLLVSTTVVEVGVDVPNATLMIIMDADRFGL--- 572

Query: 668 KTSLIQTIGRAARNVN-SKVILYAD 691
            + L Q  GR  R  + S  +L AD
Sbjct: 573 -SQLHQLRGRVGRGAHASYCVLIAD 596


>gi|302389602|ref|YP_003825423.1| ATP-dependent DNA helicase RecG [Thermosediminibacter oceani DSM
           16646]
 gi|302200230|gb|ADL07800.1| ATP-dependent DNA helicase RecG [Thermosediminibacter oceani DSM
           16646]
          Length = 674

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H ++KT E+  I++D    K DVLV   ++  G+D+P   L+ + +A++ G  
Sbjct: 499 HLRIGILHGKMKTEEKDRIMKDFYDKKIDVLVATTVVEVGVDVPSATLIVVENAERFGL- 557

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R+
Sbjct: 558 ---AQLHQLRGRVGRS 570


>gi|149371008|ref|ZP_01890603.1| transcription-repair coupling factor [unidentified eubacterium
           SCB49]
 gi|149355794|gb|EDM44352.1| transcription-repair coupling factor [unidentified eubacterium
           SCB49]
          Length = 1115

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 107/245 (43%), Gaps = 29/245 (11%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            I SR+   L  G+ GS  +  +A + +  + P +++  +K  AA   ++ +N    + V
Sbjct: 24  AIESRDNYTLS-GLVGSAVSLVIADIFKTSETPVLLILNDKEEAAYHLNDLENLLGEDNV 82

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSIN-----EQIDRMRHSATRSLLERNDCIVVSS 277
            ++        P +Y  R    IE+  + N     E ++R+      SL      IV   
Sbjct: 83  LFY--------PGSY--RRPYQIEETDNANILLRSEVLNRINSRRKPSL------IVTYP 126

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            +    + + +   +  +++ +G++V    +   L + ++KR D     G F V G  ++
Sbjct: 127 EALFEKVVTKKELDKNTLKISVGENVTIDFVNEVLFEYKFKRTDFVTEPGEFSVRGGILD 186

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEF---YPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
           ++ S   D  +R+  FG+D++ I  F     L+ ++++ +  I    N H    R +   
Sbjct: 187 VY-SFSNDEPYRIEFFGDDVDSIRTFDVETQLSLEQLKKISIIPNVENKHLDENRESF-- 243

Query: 395 AMKYI 399
            +KY+
Sbjct: 244 -LKYV 247


>gi|145517995|ref|XP_001444875.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412308|emb|CAK77478.1| unnamed protein product [Paramecium tetraurelia]
          Length = 813

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 586 LLTVLTKRMAEDLTEY-LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           LL    K++     EY L    ++ RY+H ++K  ER +I+ + + G  + L+  NL   
Sbjct: 679 LLIFCQKKLDTQKLEYRLSIHGLKARYLHGDLKQAERDQIMVEFKSGAINCLITTNLASR 738

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           GLD+ +  +V   D     F  +    I  IGR  R
Sbjct: 739 GLDVSDVDVVINYD-----FPDTIEDYIHRIGRTGR 769


>gi|328869570|gb|EGG17948.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum]
          Length = 631

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 5/102 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K+  +D+ EYL  + +    +H +    ER   I+  + GK DVLV  ++  +
Sbjct: 440 VLIFCENKKDVDDIHEYLLLKQVEAVAVHGDKSQEERDTAIKAFKDGKKDVLVATDVASK 499

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           GLD P+   V   D  KE       + I  IGR  R   + V
Sbjct: 500 GLDFPDIQHVINFDMPKE-----IENYIHRIGRTGRCGKTGV 536


>gi|302853426|ref|XP_002958228.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f.
           nagariensis]
 gi|300256416|gb|EFJ40682.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f.
           nagariensis]
          Length = 574

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 69/147 (46%), Gaps = 4/147 (2%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++ V T+R  +++  +L E   R   +H      +R   I+  R G ++ L+  ++  
Sbjct: 420 RVIVFVNTQRQCDNVHRHLEELGYRCTILHGGKTQDQREAGIKGFRDGTYNCLIATDVAG 479

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA-RNVNSKVILYADT-ITKSIQLAI 701
            G+D+P+  LV  ++ D    + + T  I   GRA  + V    +   DT +   ++  +
Sbjct: 480 RGIDVPDVALV--INYDMPNNIENYTHRIGRTGRAGKKGVAVTFLTLGDTGVFYDLKKLL 537

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEK 728
           +E+      +L  ++   + P S++ K
Sbjct: 538 EESKAAVPPELARHEASKLKPGSIEAK 564


>gi|302542239|ref|ZP_07294581.1| ATP-dependent DNA helicase RecG [Streptomyces hygroscopicus ATCC
           53653]
 gi|302459857|gb|EFL22950.1| ATP-dependent DNA helicase RecG [Streptomyces himastatinicus ATCC
           53653]
          Length = 737

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           R++RV  +H  +    + E++R    G  DVLV   ++  G+++P    + I+DAD+ G 
Sbjct: 552 RDLRVEVLHGRMAPEAKDEVMRRFAAGGVDVLVATTVIEVGVNVPNATAMVIMDADRFGV 611

Query: 665 LRSKTSLIQTIGRAARNVNSKVIL 688
               + L Q  GR  R     + L
Sbjct: 612 ----SQLHQLRGRVGRGSAPGLCL 631


>gi|238022627|ref|ZP_04603053.1| hypothetical protein GCWU000324_02536 [Kingella oralis ATCC 51147]
 gi|237865830|gb|EEP66966.1| hypothetical protein GCWU000324_02536 [Kingella oralis ATCC 51147]
          Length = 1156

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 42/208 (20%), Positives = 84/208 (40%), Gaps = 17/208 (8%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV  P+   A +L + ++ F P +    F+  ++    E + P  D   E+ S + +  +
Sbjct: 38  IVFTPDAETALRLQTAWQFFRPEDNA-LFLPDWETLPYERFSPHQDLVSERLSVLWQLKN 96

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            +            D + V   + +  +            LK G  ++   L  +LV+  
Sbjct: 97  GL-----------ADALFVPVATAMQRLAPAPFLLGRTFWLKTGQRLDIAALRQNLVEAG 145

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y      +  G F V G  +++FP+   D  +R+ +F ++I+ I  F P + + I  V  
Sbjct: 146 YSAVSNVVAGGEFAVRGGIVDLFPTG-SDTPYRIDLFDDEIDSIKTFDPDSQRTIAPVSE 204

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELK 404
           I++     +    PT + A K  +   +
Sbjct: 205 IRLLPAHEF----PTDDAAQKIFRSRFR 228


>gi|218193216|gb|EEC75643.1| hypothetical protein OsI_12390 [Oryza sativa Indica Group]
          Length = 1318

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI+   R GK  +++   +L EGLD+P C LV   D        +  S IQ+ GR AR  
Sbjct: 383 EIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSA-----TVCSFIQSRGR-ARME 436

Query: 683 NSKVIL 688
           NS  +L
Sbjct: 437 NSDYLL 442


>gi|238588435|ref|XP_002391725.1| hypothetical protein MPER_08804 [Moniliophthora perniciosa FA553]
 gi|215456784|gb|EEB92655.1| hypothetical protein MPER_08804 [Moniliophthora perniciosa FA553]
          Length = 674

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++E+I+  + G+F+VLV  ++  EGLDI E  L+   DA K     +   ++Q +GR  
Sbjct: 46  EQLEVIKKFKAGEFNVLVATSIGEEGLDIGEVDLIICYDAQK-----TPIRMLQRLGRTG 100

Query: 680 R 680
           R
Sbjct: 101 R 101


>gi|148245051|ref|YP_001219745.1| transcription-repair coupling factor [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326878|dbj|BAF62021.1| transcription-repair coupling factor [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 1145

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 10/115 (8%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAE+L + + +  IR+   H ++ T E  +I+ D    +F +LV   ++  G+DIP    
Sbjct: 827 MAENLKQIIPKLQIRI--AHGKIPTRELEQIMSDFYHARFHILVCTTIIETGIDIPNANT 884

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           + I +A   G       L Q  GR  R+ +     YA  I KS  L++ +T + R
Sbjct: 885 IIINNAQNFGL----AQLHQLRGRVGRSHHRA---YAYLIVKS-HLSLSKTAKDR 931


>gi|41469333|gb|AAS07189.1| putative ribonuclease III, 5'-partial (with alternative splicing)
           [Oryza sativa Japonica Group]
          Length = 1017

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI+   R GK  +++   +L EGLD+P C LV   D        +  S IQ+ GR AR  
Sbjct: 55  EIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSA-----TVCSFIQSRGR-ARME 108

Query: 683 NSKVIL 688
           NS  +L
Sbjct: 109 NSDYLL 114


>gi|115453927|ref|NP_001050564.1| Os03g0583900 [Oryza sativa Japonica Group]
 gi|122246906|sp|Q10HL3|DCL2A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2a; AltName:
           Full=Dicer-like protein 2a; Short=OsDCL2a
 gi|50399921|gb|AAT76309.1| putative RNA helicase/RNAseIII protein, C-terminus truncated [Oryza
           sativa Japonica Group]
 gi|108709535|gb|ABF97330.1| Type III restriction enzyme, res subunit family protein, expressed
           [Oryza sativa Japonica Group]
 gi|113549035|dbj|BAF12478.1| Os03g0583900 [Oryza sativa Japonica Group]
 gi|215701504|dbj|BAG92928.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1410

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI+   R GK  +++   +L EGLD+P C LV   D        +  S IQ+ GR AR  
Sbjct: 448 EIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSA-----TVCSFIQSRGR-ARME 501

Query: 683 NSKVIL 688
           NS  +L
Sbjct: 502 NSDYLL 507


>gi|73965187|ref|XP_537598.2| PREDICTED: similar to DEAD box polypeptide 42 protein isoform 1
           [Canis familiaris]
          Length = 696

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612


>gi|67483276|ref|XP_656915.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56474154|gb|EAL51537.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 535

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 9/114 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V TKR A++L   L ++  RV  MH +    ER   + D + G  + L+  ++  
Sbjct: 400 KVLIFVKTKRSADNLCYKLRDQRYRVACMHGDKVQAERDRALSDFKSGAVNYLIATDVAS 459

Query: 644 EGLDIPECGLVAI--LDADKEGFLRSKTSLIQTIGRAARNVNSKVI---LYADT 692
            GLDI    +V    + +D E ++      I   GR  R+V  + I    YAD 
Sbjct: 460 RGLDIRNIEIVINYEMPSDIENYIHR----IGRTGRMGRSVEGEAISLFTYADA 509


>gi|320167743|gb|EFW44642.1| eIF4AIII protein [Capsaspora owczarzaki ATCC 30864]
          Length = 413

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  E L E + + N  V +MH E+   ER  I++  R G   VL+  +L   G+D+ +
Sbjct: 285 TRRKVEFLAEEMAKANFTVSHMHGEMDQKERDTIMKQFRSGATRVLITTDLWARGIDVQQ 344

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             LV   D   ++E +       I  IGR+ R   S V +
Sbjct: 345 VSLVINYDLPINRENY-------IHRIGRSGRFGRSGVAI 377


>gi|269468408|gb|EEZ80073.1| hypothetical protein Sup05_1317 [uncultured SUP05 cluster
           bacterium]
          Length = 614

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 11/149 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK +  +L+E L  R      ++ +++  +R +II   + G  D+LV  ++   GLD+P 
Sbjct: 261 TKTLTIELSEKLSARGFSAEAINGDIQQSQREKIINKFKKGGIDILVATDVAARGLDVPR 320

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
              V   D   D E ++      I   GRA R    + IL+     + +   I+  TR++
Sbjct: 321 ISHVVNYDIPQDAETYVHR----IGRTGRAGR--EGEAILFVSHRERRMLNNIERVTRQK 374

Query: 709 EKQLEHNKKHNINPQSV---KEKIMEVID 734
            + LE      IN + +   K++I E I+
Sbjct: 375 IEPLELPTAKIINEKRIDTFKKRITETIN 403


>gi|254281274|ref|NP_001156875.1| endoribonuclease Dicer [Taeniopygia guttata]
          Length = 1921

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           EV+  ++ E++R  R  + ++L+  +++ EG+DIP+C LV   D   E       S +Q+
Sbjct: 495 EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE-----YRSYVQS 549

Query: 675 IGRAARNVNSKVILYADT 692
            GR AR   S  I+ ADT
Sbjct: 550 KGR-ARAPISNYIMLADT 566


>gi|255955551|ref|XP_002568528.1| Pc21g15180 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590239|emb|CAP96415.1| Pc21g15180 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 416

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + L + + E N  V  MH E+   ER  I++D R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLADKMREANFTVSSMHGEMPQKERDSIMQDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R
Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSLVINYDLPT-----NRENYIHRIGRSGR 357


>gi|260830085|ref|XP_002609992.1| hypothetical protein BRAFLDRAFT_287272 [Branchiostoma floridae]
 gi|229295354|gb|EEN66002.1| hypothetical protein BRAFLDRAFT_287272 [Branchiostoma floridae]
          Length = 672

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 7/97 (7%)

Query: 586 LLTVLTKRMAEDL-TEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +L  +  RM  DL  + ++++ N+R   MH +    ER   +  L  G+ DV+V   +L 
Sbjct: 475 VLVFVDSRMGADLLADAIHKKCNVRALSMHGDKPQSERSAALNSLLKGEVDVVVATGVLG 534

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+    LV + D        S    I  IGRA R
Sbjct: 535 RGLDLCRVRLVIVFDMPP-----SVNEYIHQIGRAGR 566


>gi|194246516|ref|YP_002004155.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali]
 gi|193806873|emb|CAP18302.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali]
          Length = 531

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++  YL E N  V ++H ++K  +R +++ + R  K  +L+  ++   G+DI  
Sbjct: 251 TKKDVDEINAYLQENNFSVDFLHGDLKQNQRQQVMNNFRNQKIKILIATDVAARGIDISS 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +V   D       R     +  IGR  R
Sbjct: 311 ITMVINYDLS-----RQNEIYVHRIGRTGR 335


>gi|146096170|ref|XP_001467723.1| ATP-dependent RNA helicase [Leishmania infantum JPCM5]
 gi|134072089|emb|CAM70788.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
 gi|322501693|emb|CBZ36774.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 614

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   QG R+L+ V  KR A+ L  YL +  I    +H +    ER E +   + G   VL
Sbjct: 382 LKEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCRVL 441

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLDIP   +V   D        +    +  IGR  R
Sbjct: 442 VATDVASRGLDIPNVAVVVQYD-----LPSNIDDYVHRIGRTGR 480


>gi|146311285|ref|YP_001176359.1| transcription-repair coupling factor [Enterobacter sp. 638]
 gi|145318161|gb|ABP60308.1| transcription-repair coupling factor [Enterobacter sp. 638]
          Length = 1148

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 60/303 (19%), Positives = 126/303 (41%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHAGPVVLVAPDMQNALRLHDEIRQFTDSLVFNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G+ + +  L S L    Y+  D  +  G +   G  ++++P    D  +
Sbjct: 130 --------MKKGERLSRDALRSQLDSAGYRHVDQVMEHGEYATRGALLDLYPMG-SDQPY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  V+ I +     +    PT  TA++  + + + +  
Sbjct: 181 RLDFFDDEIDSLRVFDADTQRTLEEVDAINLLPAHEF----PTDKTAIELFRSQWRDKF- 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           ++++     +A+ + Q++        + G+  +   Y + L      EP P LF Y P  
Sbjct: 236 DVKR-----DAEHIYQQV--------SKGTLPAGIEYWQPLFF---SEPLPALFSYFPAK 279

Query: 469 SLL 471
           +L+
Sbjct: 280 TLI 282


>gi|114777171|ref|ZP_01452182.1| transcription-repair coupling factor [Mariprofundus ferrooxydans
           PV-1]
 gi|114552316|gb|EAU54799.1| transcription-repair coupling factor [Mariprofundus ferrooxydans
           PV-1]
          Length = 1109

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           I   E  +  + Q+K GD ++   L S L +      D  + +G F   G   +++P+  
Sbjct: 110 IAPPEVVAAHVWQIKPGDMLDIAALKSRLAEAGMSPADRVLAQGEFAARGGLFDVWPA-T 168

Query: 344 EDVAWRVSMFGNDIEEISEFYP 365
           E+   R+ MFG+DIE I  F P
Sbjct: 169 EETPLRIDMFGDDIESIRRFDP 190


>gi|46446859|ref|YP_008224.1| primosome assembly protein PriA [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400500|emb|CAF23949.1| putative primosomal protein N' [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 745

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 9/69 (13%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF----LRSKTSLIQTI--- 675
           +++RD   GK DVL+G  ++ +GL  PE  LV +L++D  G      R+  ++ Q I   
Sbjct: 539 KLLRDFGTGKADVLIGTQMIAKGLHFPEVTLVGVLNSDA-GLNIPDFRASETIFQLITQV 597

Query: 676 -GRAARNVN 683
            GR+ R V 
Sbjct: 598 AGRSGRGVT 606


>gi|332662377|ref|YP_004445165.1| primosomal protein N' [Haliscomenobacter hydrossis DSM 1100]
 gi|332331191|gb|AEE48292.1| primosomal protein N' [Haliscomenobacter hydrossis DSM 1100]
          Length = 823

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 8/83 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D   G+ +VLVG  ++ +GLD  + GLV +L AD+           R+   ++Q  
Sbjct: 616 KIINDFEEGRINVLVGTQMVTKGLDFEKVGLVGVLSADQLLQFPDFRAGERAFQLMLQVA 675

Query: 676 GRAAR-NVNSKVILYADTITKSI 697
           GRA R +   KVI+ +  +   +
Sbjct: 676 GRAGRKHKRGKVIIQSHNVANPV 698


>gi|332229234|ref|XP_003263796.1| PREDICTED: Fanconi anemia group M protein isoform 2 [Nomascus
           leucogenys]
          Length = 2024

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++E+++  R G ++ LV   +  EGLDI E  L+   D+ K     S   L+Q +GR  
Sbjct: 498 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLVQRMGRTG 552

Query: 680 RNVNSKVIL 688
           R    ++++
Sbjct: 553 RKRQGRIVV 561


>gi|315037505|ref|YP_004031073.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1112]
 gi|325955969|ref|YP_004286579.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           30SC]
 gi|312275638|gb|ADQ58278.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1112]
 gi|325332534|gb|ADZ06442.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           30SC]
 gi|327182801|gb|AEA31248.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1118]
          Length = 497

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++    R+ +++  R GK D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 307 SGVTHVYNYD---IPQDPDSYVHRIGRTGR 333


>gi|296214902|ref|XP_002753903.1| PREDICTED: fanconi anemia group M protein [Callithrix jacchus]
          Length = 2043

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++E+++  R G ++ LV   +  EGLDI E  L+   D+ K     S   L+Q +GR  
Sbjct: 522 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLVQRMGRTG 576

Query: 680 RNVNSKVIL 688
           R    ++++
Sbjct: 577 RKRQGRIVV 585


>gi|226365826|ref|YP_002783609.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
 gi|226244316|dbj|BAH54664.1| putative ATP-dependent RNA helicase [Rhodococcus opacus B4]
          Length = 534

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ +++ L ER   V  +H ++  + R + ++  R GK DVLV  ++   G+DI
Sbjct: 300 TKRTAQKVSDELAERGFAVGSVHGDLNQVAREKALKAFRSGKIDVLVATDVAARGIDI 357


>gi|209972934|ref|YP_002300381.1| gp19.5 [Bacillus phage SPO1]
 gi|209871254|gb|ACI91010.1| gp19.5 [Bacillus phage SPO1]
          Length = 530

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 15/163 (9%)

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q  R  G+++        R QV    D++   A+ G + L+ V      E +   L  + 
Sbjct: 367 QTARDQGIIN-----NQERNQV--FVDKVLERAKSGKQCLIIVNETTHGEIILSMLQNQG 419

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           + V + H E+    R  ++  L  G  DVLV   +L EG+D+     + ++   K     
Sbjct: 420 VTVDFTHGEMTKTHRQSVLDRLDEGSLDVLVATPILDEGVDVSGINCLFLMAGGK----- 474

Query: 667 SKTSLIQTIGRAARNV--NSKVILYADTITKSIQLAIDETTRR 707
           S   ++Q IGR  R     S + +Y D +    +  +D T RR
Sbjct: 475 SMRQILQRIGRGLRKKEDGSGLEVY-DALDYHNEFLVDHTARR 516


>gi|114652855|ref|XP_509928.2| PREDICTED: Fanconi anemia group M protein isoform 2 [Pan
           troglodytes]
          Length = 2048

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++E+++  R G ++ LV   +  EGLDI E  L+   D+ K     S   L+Q +GR  
Sbjct: 524 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLVQRMGRTG 578

Query: 680 RNVNSKVIL 688
           R    ++++
Sbjct: 579 RKRQGRIVV 587


>gi|33521040|gb|AAQ21341.1| Csw015 [uncultured bacterium]
          Length = 1499

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSE 615
           P+ +  +  Q E VY  +          L+ V T+RMAE    +L ER  R  V   H  
Sbjct: 295 PLSVVMSNDQWEQVYGRVAELVLSHRTTLVFVNTRRMAERAARHLAERLGREAVAAHHGS 354

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R+   + L+ G   VLV    L  GLDI +  LV  L     G  RS  + +Q +
Sbjct: 355 LSKEARLLAEQRLKRGDLKVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRV 409

Query: 676 GRAARNVNS 684
           GR+   V  
Sbjct: 410 GRSGHQVGG 418


>gi|57867605|ref|YP_189253.1| DEAD-box ATP dependent DNA helicase [Staphylococcus epidermidis
           RP62A]
 gi|293366046|ref|ZP_06612734.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81673916|sp|Q5HME0|Y1688_STAEQ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SERP1688
 gi|57638263|gb|AAW55051.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           epidermidis RP62A]
 gi|291319769|gb|EFE60127.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726161|gb|EGG62633.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU144]
 gi|329734135|gb|EGG70453.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU045]
          Length = 509

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 4/122 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
            G+  + + D      S T  I   GRA +      + + + I       I++   RR K
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK--EGIAVTFVNPIEMDYIRQIEDVNNRRMK 364

Query: 711 QL 712
            L
Sbjct: 365 AL 366


>gi|332842130|ref|XP_003314350.1| PREDICTED: Fanconi anemia group M protein isoform 1 [Pan
           troglodytes]
          Length = 2022

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++E+++  R G ++ LV   +  EGLDI E  L+   D+ K     S   L+Q +GR  
Sbjct: 498 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLVQRMGRTG 552

Query: 680 RNVNSKVIL 688
           R    ++++
Sbjct: 553 RKRQGRIVV 561


>gi|296421505|ref|XP_002840305.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636520|emb|CAZ84496.1| unnamed protein product [Tuber melanosporum]
          Length = 472

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE L  R+  V  MH ++   +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 347 TRRKVDWLTEKLTARDFTVSAMHGDMDQHQRDLIMKEFRSGSSRVLIATDLLARGIDVQQ 406

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 407 VSLVINYDLPANRENYI 423


>gi|94992721|ref|YP_600820.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
 gi|94546229|gb|ABF36276.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
          Length = 416

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---ITQDPESYVHRIGRTGR 332


>gi|21752288|dbj|BAC04159.1| unnamed protein product [Homo sapiens]
          Length = 669

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++E+++  R G ++ LV   +  EGLDI E  L+   D+ K     S   L+Q +GR  
Sbjct: 524 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLVQRMGRTG 578

Query: 680 RNVNSKVIL 688
           R    ++++
Sbjct: 579 RKRQGRIVI 587


>gi|37521894|ref|NP_925271.1| ATP-dependent RNA helicase [Gloeobacter violaceus PCC 7421]
 gi|35212893|dbj|BAC90266.1| gll2325 [Gloeobacter violaceus PCC 7421]
          Length = 384

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 575 INLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           + L  ++G+R +++   TK  A  L+EYL +  I    +H      +R E +   + GK+
Sbjct: 232 LELLEREGMRQVIVFTRTKHRANRLSEYLSKARISCERIHGNRSQGQRTEALAGFKSGKY 291

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            VLV  ++   G+DI   G V   D  +     +    I  +GR AR
Sbjct: 292 RVLVATDIASRGIDIEALGHVVNFDVPQ-----AAEDYIHRVGRTAR 333


>gi|319648702|ref|ZP_08002913.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
 gi|317389121|gb|EFV69937.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
          Length = 516

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LTE L  R      +H ++   +R+  +R  + G  +VLV  ++   GLDI  
Sbjct: 230 TKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDI-- 287

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   + + + +     K +  AI++TT+R+
Sbjct: 288 SGVTHVYNFD---VPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRK 343


>gi|297193946|ref|ZP_06911344.1| transcriptional-repair coupling factor [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152012|gb|EFH31470.1| transcriptional-repair coupling factor [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 1070

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 12/108 (11%)

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           + G+G +E      V L+ G   +  +++  L    Y R ++   RG F V G  +++FP
Sbjct: 33  VKGLGDLEP-----VSLRTGQQADLNDVVEGLAAAAYSRVELVEKRGEFAVRGGILDVFP 87

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
              E+   RV  +G+D+EEI  F      K+ +  +++I  +  +  P
Sbjct: 88  P-TEEHPLRVEFWGDDVEEIRYF------KVADQRSLEIAEHGLWAPP 128


>gi|293373074|ref|ZP_06619442.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f]
 gi|292631960|gb|EFF50570.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f]
          Length = 422

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 9/107 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   +++ + L    + V  MHS+++  +R  ++ + + G+ ++LV  +++ 
Sbjct: 246 RVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRINILVATDIVA 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+DI +  LV   D   D E +       +  IGR AR  N  V L
Sbjct: 306 RGIDIDDIRLVINFDVPHDSEDY-------VHRIGRTARANNDGVAL 345


>gi|257453021|ref|ZP_05618320.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 3_1_5R]
 gi|317059561|ref|ZP_07924046.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 3_1_5R]
 gi|313685237|gb|EFS22072.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 3_1_5R]
          Length = 679

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 45/79 (56%), Gaps = 4/79 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N ++  +H  +K +E+ EI++  +  + D+LV   ++  G+D+P   ++ IL+A++ G  
Sbjct: 501 NYKIALLHGRMKNIEKDEIMQRFKQREIDILVSTTVIEVGIDVPNAVIMTILNAERFGL- 559

Query: 666 RSKTSLIQTIGRAARNVNS 684
              ++L Q  GR  R  ++
Sbjct: 560 ---SALHQLRGRVGRGKDA 575


>gi|254805085|ref|YP_003083306.1| transcription-repair coupling factor [Neisseria meningitidis
           alpha14]
 gi|254668627|emb|CBA06236.1| transcription-repair coupling factor [Neisseria meningitidis
           alpha14]
          Length = 1375

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 87/208 (41%), Gaps = 17/208 (8%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  +   A +L + +  F PH+    F+  ++    E + P  D   E+ S++ +   
Sbjct: 37  VVLTQDAEQALRLQTAWLFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ--- 92

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            ++  A        D + V   + +  +  V   +     LK G +++   L S LV   
Sbjct: 93  -IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDAG 144

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  
Sbjct: 145 YNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVSE 203

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELK 404
           I++     +    PT + A K  +   +
Sbjct: 204 IRLLPAHEF----PTDSEAQKIFRSRFR 227



 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 1066 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1122

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 1123 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1158


>gi|227829772|ref|YP_002831551.1| type III restriction protein res subunit [Sulfolobus islandicus
           L.S.2.15]
 gi|227456219|gb|ACP34906.1| type III restriction protein res subunit [Sulfolobus islandicus
           L.S.2.15]
          Length = 666

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 599 TEYLYERNI----RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           T Y +ER I    +V+ +  +    ER++++++LR G+ DVL+   +  EG+DIPE  L+
Sbjct: 306 TAYEFERAISDLGKVKVITGDSSRYERLKVVQNLRKGEIDVLISTIVGEEGIDIPEAKLL 365

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681
            + D       +S     Q +GR  R 
Sbjct: 366 IMTDVP-----QSALRFYQRLGRLIRG 387


>gi|238854784|ref|ZP_04645114.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 269-3]
 gi|260664015|ref|ZP_05864868.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii SJ-7A-US]
 gi|282933862|ref|ZP_06339210.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 208-1]
 gi|313472296|ref|ZP_07812788.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 1153]
 gi|238832574|gb|EEQ24881.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 269-3]
 gi|239529856|gb|EEQ68857.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 1153]
 gi|260561901|gb|EEX27870.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii SJ-7A-US]
 gi|281301951|gb|EFA94205.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 208-1]
          Length = 674

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 4/79 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y  + +V  +H ++   ++ +I+ D   G  D+LV  +++  G+D+P   ++ I DAD+ 
Sbjct: 494 YFNHEKVVLLHGQMSGEDKDQIMTDFSEGNIDILVATSVIEVGVDVPNANMMVIFDADRF 553

Query: 663 GFLRSKTSLIQTIGRAARN 681
           G     + L Q  GR  R 
Sbjct: 554 GL----SQLHQLRGRIGRG 568



 Score = 37.7 bits (86), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 560 EIRSARTQVE--DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T V    +Y  I    Q  L +   +L  +    + E L    +R+  + S  K
Sbjct: 282 DVGSGKTVVAVFAIYAAITAGYQAALMVPTEILANQHFGKIAELLRPFGVRIALLTSSTK 341

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
            +E+ EI R+L  G  +V++G + L++  L     GLV I
Sbjct: 342 AMEKREIYRELADGTLNVVIGTHALIQPSLKFKNLGLVII 381


>gi|222625282|gb|EEE59414.1| hypothetical protein OsJ_11564 [Oryza sativa Japonica Group]
          Length = 1371

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI+   R GK  +++   +L EGLD+P C LV   D        +  S IQ+ GR AR  
Sbjct: 448 EIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSA-----TVCSFIQSRGR-ARME 501

Query: 683 NSKVIL 688
           NS  +L
Sbjct: 502 NSDYLL 507


>gi|89114032|gb|ABD61607.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550

Query: 683 NSKVIL----YADTITKSIQL 699
              VIL    Y      S+QL
Sbjct: 551 AYHVILVAPSYKSPTVGSVQL 571


>gi|329666667|gb|AEB92615.1| putative RNA helicase [Lactobacillus johnsonii DPC 6026]
          Length = 479

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++   +R+ +++  R GK D+LV  ++   GLDI  
Sbjct: 243 TKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDI-- 300

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 301 SGVSHVYNYD---IPQDPDSYVHRIGRTGR 327


>gi|240080014|ref|ZP_04724557.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae FA19]
 gi|268596156|ref|ZP_06130323.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae FA19]
 gi|268549944|gb|EEZ44963.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae FA19]
          Length = 680

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++ +   G+ +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPEPNIGL--VHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|294888665|ref|XP_002772561.1| ATP-dependent RNA helicase rok1, putative [Perkinsus marinus ATCC
           50983]
 gi|239876829|gb|EER04377.1| ATP-dependent RNA helicase rok1, putative [Perkinsus marinus ATCC
           50983]
          Length = 239

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 5/98 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L  V +K  A++LT+ L    + V  +HS++   +R   I + RLGK  +L+  +++  G
Sbjct: 54  LAFVQSKARAQELTKELMFDGVFVACIHSDMSRKQRDTCIENFRLGKIWILICTDVMARG 113

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +D    G+  +++ D     R+  + I  +GR  R  N
Sbjct: 114 VDFK--GVAQVINID---IPRASATYIHRVGRTGRAGN 146


>gi|27468597|ref|NP_765234.1| ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|81843521|sp|Q8CRP6|Y1679_STAES RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SE_1679
 gi|27316144|gb|AAO05278.1|AE016749_224 ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
          Length = 509

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 4/122 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
            G+  + + D      S T  I   GRA +      + + + I       I++   RR K
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK--EGIAVTFVNPIEMDYIRQIEDVNNRRMK 364

Query: 711 QL 712
            L
Sbjct: 365 AL 366


>gi|319399568|gb|EFV87823.1| DEAD/DEAH box helicase family protein [Staphylococcus epidermidis
           FRI909]
          Length = 509

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 4/122 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
            G+  + + D      S T  I   GRA +      + + + I       I++   RR K
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK--EGIAVTFVNPIEMDYIRQIEDVNNRRMK 364

Query: 711 QL 712
            L
Sbjct: 365 AL 366


>gi|301093191|ref|XP_002997444.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans
           T30-4]
 gi|262110700|gb|EEY68752.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans
           T30-4]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE +  ++  V  MH +++  ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 286 TRRKVDWLTEKMQSKDFTVSAMHGDMEQRERDIIMREFRSGSSRVLITTDLLARGIDVQQ 345

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        ++ + I  IGR+ R
Sbjct: 346 VSLVINYDLPT-----NRENYIHRIGRSGR 370


>gi|209809352|ref|YP_002264890.1| putative ATP-dependent RNA helicase RhlE [Aliivibrio salmonicida
           LFI1238]
 gi|208010914|emb|CAQ81319.1| putative ATP-dependent RNA helicase RhlE [Aliivibrio salmonicida
           LFI1238]
          Length = 442

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 21/142 (14%)

Query: 554 LVDPPVEIR----SARTQVEDVYDEINLAAQQGL-----------RILLTVLTKRMAEDL 598
           L++ P+EI+     A T V+ V+  +N   +  L           + L+ V  K   E L
Sbjct: 226 LLNDPIEIQVQSADASTLVQRVF-TVNKGEKTALLAHLIKQNEWRQALIFVNAKNSCEHL 284

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
            + L +R I     H +     R  I+   +LG+ +VL+  N+   GLDI +  +V   D
Sbjct: 285 ADKLSKRGITAEVFHGDKGQGARTRILEAFKLGEIEVLIATNIAARGLDIEKLPVVINFD 344

Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680
                  RS +  +  IGR+ R
Sbjct: 345 -----LPRSPSDYMHRIGRSGR 361


>gi|125606362|gb|EAZ45398.1| hypothetical protein OsJ_30047 [Oryza sativa Japonica Group]
          Length = 685

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 12/125 (9%)

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R+AR QV  + D I   ++ G  I+ T  TK  A DL+  +       R +H +V   +R
Sbjct: 341 RAARAQV--IPDIIRCYSRGGRTIIFTE-TKESASDLSGLIAGS----RALHGDVAQAQR 393

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             I+   R GKF VLV  N+   GLDI +  L+   +       R   + I   GR  R 
Sbjct: 394 EVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPP-----RDVEAYIHRSGRTGRA 448

Query: 682 VNSKV 686
            N+ V
Sbjct: 449 GNTGV 453


>gi|23273574|gb|AAH36056.1| FANCM protein [Homo sapiens]
 gi|119586188|gb|EAW65784.1| Fanconi anemia, complementation group M, isoform CRA_d [Homo
           sapiens]
 gi|325463111|gb|ADZ15326.1| Fanconi anemia, complementation group M [synthetic construct]
          Length = 669

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++E+++  R G ++ LV   +  EGLDI E  L+   D+ K     S   L+Q +GR  
Sbjct: 524 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLVQRMGRTG 578

Query: 680 RNVNSKVIL 688
           R    ++++
Sbjct: 579 RKRQGRIVI 587


>gi|66045137|ref|YP_234978.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255844|gb|AAY36940.1| Transcription-repair coupling factor [Pseudomonas syringae pv.
           syringae B728a]
          Length = 1150

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 55/277 (19%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           A +L  E K F P   V +F  +    YD + P       D   ++ +S+  ++  + H 
Sbjct: 51  AERLEQELKFFAPTLPVLHFPDWETLPYDLFSPH-----QDIISQRIASLY-RLPELEHG 104

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
                      +VV   + ++ +   +      + L +G  ++ + + + L    Y+  D
Sbjct: 105 ----------VLVVPITTALHRLAPTKFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVD 154

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
                G F V G  I++FP     + +R+ +F ++IE +  F P T + I  VE++++  
Sbjct: 155 TVYEHGEFTVRGALIDLFPMG-SKLPFRIDLFDDEIETLRTFDPDTQRSIDKVESVRL-- 211

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD------LEMLET 435
                                L  R   L+KE       R  +R   D       + L +
Sbjct: 212 ---------------------LPAREFPLQKEEVTRFKARFRERFDVDFRRSPIFQDLSS 250

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             +   IE Y          E   TLF+Y+P+D+ +F
Sbjct: 251 GITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF 282



 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VL+   ++  G+D+P  
Sbjct: 826 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 884 NTIIIERADKFGL----AQLHQLRGRVGRS 909


>gi|50293589|ref|XP_449206.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74608568|sp|Q6FKN8|DBP5_CANGA RecName: Full=ATP-dependent RNA helicase DBP5
 gi|49528519|emb|CAG62178.1| unnamed protein product [Candida glabrata]
          Length = 504

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-EGFLR 666
           +V  +HS+++T ER  +I D R G+  VL+  N+L  G+DIP   +V   D       + 
Sbjct: 378 QVSILHSDLRTDERDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGMP 437

Query: 667 SKTSLIQTIGRAAR 680
              + +  IGR  R
Sbjct: 438 DYATYVHRIGRTGR 451


>gi|325188273|emb|CCA22813.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 465

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE +  ++  V  MH ++   +R  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 340 TRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRVLITTDLLARGIDVQQ 399

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        ++ + I  IGR+ R
Sbjct: 400 VSLVVNYD-----LPLNRENYIHRIGRSGR 424


>gi|313226956|emb|CBY22101.1| unnamed protein product [Oikopleura dioica]
          Length = 664

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 15/130 (11%)

Query: 565 RTQVEDVYDE------INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           R  +E V DE      + +  +    +L+    KR  + + EYL  + +    +H     
Sbjct: 438 RQDIEYVLDEAKVVTVLQMLQKTSPPVLIFAERKRAVDKVHEYLLLKGVECAAIHGGKDQ 497

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIG 676
            +R+E  R  R G+ DVLV  ++  +GLD PE   V   D   D E +       I  IG
Sbjct: 498 EDRMEACRQFRGGEKDVLVATDIASKGLDFPEIEHVINYDMPEDIENY-------IHRIG 550

Query: 677 RAARNVNSKV 686
           R  R  +  V
Sbjct: 551 RTGRGNHQGV 560


>gi|282852614|ref|ZP_06261956.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus
           gasseri 224-1]
 gi|282556356|gb|EFB61976.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus
           gasseri 224-1]
          Length = 452

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++   +R+ +++  R GK D+LV  ++   GLDI  
Sbjct: 215 TKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDI-- 272

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 273 SGVSHVYNYD---IPQDPDSYVHRIGRTGR 299


>gi|257467419|ref|ZP_05631730.1| ATP-dependent DNA helicase recG [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315918543|ref|ZP_07914783.1| ATP-dependent DNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313692418|gb|EFS29253.1| ATP-dependent DNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 679

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 45/79 (56%), Gaps = 4/79 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N ++  +H  +K +E+ EI++  +  + D+LV   ++  G+D+P   ++ IL+A++ G  
Sbjct: 501 NYKIALLHGRMKNIEKDEIMQRFKQREIDILVSTTVIEVGIDVPNAVIMTILNAERFGL- 559

Query: 666 RSKTSLIQTIGRAARNVNS 684
              ++L Q  GR  R  ++
Sbjct: 560 ---SALHQLRGRVGRGKDA 575


>gi|227878361|ref|ZP_03996316.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus
           JV-V01]
 gi|256849208|ref|ZP_05554641.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           MV-1A-US]
 gi|293380351|ref|ZP_06626422.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
 gi|227862040|gb|EEJ69604.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus
           JV-V01]
 gi|256713984|gb|EEU28972.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           MV-1A-US]
 gi|290923034|gb|EFD99965.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
          Length = 495

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++    R+ +++  R GK D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 307 SGVTHVYNYD---IPQDPDSYVHRIGRTGR 333


>gi|222617461|gb|EEE53593.1| hypothetical protein OsJ_36838 [Oryza sativa Japonica Group]
          Length = 676

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G + ++   TKR A+ L+ Y   R+ + + +H ++   +R   ++  R G F++L+  +
Sbjct: 389 KGGKCIVFTQTKRDADRLS-YTMGRSFQCQALHGDITQAQRERTLKGFREGHFNILIATD 447

Query: 641 LLREGLDIPECGLV 654
           +   GLDIP   LV
Sbjct: 448 VAARGLDIPNVDLV 461


>gi|260831340|ref|XP_002610617.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae]
 gi|229295984|gb|EEN66627.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae]
          Length = 1760

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 7/87 (8%)

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L  R +R R   +E+    + EI+R  R+ + ++L+G +++ EG+D+P+C LV   D  K
Sbjct: 444 LSSRGMRSR--ETEMAFRRQEEILRRFRMHENNLLIGTSVVEEGVDVPKCNLVVRFDLPK 501

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +       S +Q+ GRA    +  V+L
Sbjct: 502 D-----YRSYVQSKGRARAQGSHYVML 523


>gi|254448008|ref|ZP_05061472.1| transcription-repair coupling factor [gamma proteobacterium
           HTCC5015]
 gi|198262434|gb|EDY86715.1| transcription-repair coupling factor [gamma proteobacterium
           HTCC5015]
          Length = 1162

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 34/238 (14%)

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           + + P  D   E+ S++  Q+ R++    R LL      ++ + S +  IG V+   Q  
Sbjct: 90  DVFSPHQDIISERLSTLY-QLPRLQ----RGLL------IIPATSLLQRIGPVDYIEQQA 138

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
               +GD+V+  +L   L +  Y+     +  G F V G  +++FP   +   +R+ +F 
Sbjct: 139 FVASVGDTVDLNQLRQRLEQAGYQCVSQVMEHGEFAVRGALLDLFPMG-QAQPFRIDLFD 197

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE I  F P T +     + I +     +    P   +A+   +   + R  E + + 
Sbjct: 198 DEIETIRTFDPETQRSTGQHQHINLLPAREF----PFNPSAIDDFRSAWRERF-EGDPQN 252

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
            L+     E ++               IE Y      R       TLF+Y+PE++LLF
Sbjct: 253 ALIYRNISEGQLP------------SGIEYYLPLFFERT-----ATLFDYLPENALLF 293


>gi|190571463|ref|YP_001975821.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190357735|emb|CAQ55186.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 408

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TKR A+ L + L++ +     +H +++  +R  +I   R G+  ++V  ++   
Sbjct: 243 IIIFVKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIMVATDVASR 302

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           GLDIP    V   D  +     S+   +  IGR AR
Sbjct: 303 GLDIPHIQHVINYDVPQ-----SQADYVHRIGRTAR 333


>gi|86742488|ref|YP_482888.1| DEAD/DEAH box helicase-like protein [Frankia sp. CcI3]
 gi|86569350|gb|ABD13159.1| DEAD/DEAH box helicase-like [Frankia sp. CcI3]
          Length = 649

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL ++  V T+R A+ + E L +R      +H ++   +R + +R  R GK DVLV
Sbjct: 326 AGGRGLAMVF-VRTRRTADKVAEDLAKRGFAAAAVHGDLGQGQREQALRAFRSGKVDVLV 384

Query: 638 GINLLREGLDI 648
             ++   G+DI
Sbjct: 385 ATDVAARGIDI 395


>gi|89114026|gb|ABD61604.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550

Query: 683 NSKVIL----YADTITKSIQL 699
              VIL    Y      S+QL
Sbjct: 551 AYHVILVAPSYKSPTVGSVQL 571


>gi|89114034|gb|ABD61608.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550

Query: 683 NSKVIL----YADTITKSIQL 699
              VIL    Y      S+QL
Sbjct: 551 AYHVILVAPSYKSPTVGSVQL 571


>gi|50399920|gb|AAT76308.1| putative RNA helicase/RNAseIII protein, C-terminus truncated [Oryza
           sativa Japonica Group]
          Length = 585

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI+   R GK  +++   +L EGLD+P C LV   D        +  S IQ+ GR AR  
Sbjct: 448 EIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSA-----TVCSFIQSRGR-ARME 501

Query: 683 NSKVIL 688
           NS  +L
Sbjct: 502 NSDYLL 507


>gi|332229232|ref|XP_003263795.1| PREDICTED: Fanconi anemia group M protein isoform 1 [Nomascus
           leucogenys]
          Length = 2050

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++E+++  R G ++ LV   +  EGLDI E  L+   D+ K     S   L+Q +GR  
Sbjct: 524 EQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQK-----SPIRLVQRMGRTG 578

Query: 680 RNVNSKVIL 688
           R    ++++
Sbjct: 579 RKRQGRIVV 587


>gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 536

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L +R      +H ++   +R  ++R  R G  DVLV  ++   GLD+  
Sbjct: 249 TKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVATDVAARGLDV-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  +++ D     +   S +  IGR  R
Sbjct: 307 SGVTHVVNFD---LPQDPESYVHRIGRTGR 333


>gi|221632687|ref|YP_002521908.1| transcription-repair coupling factor [Thermomicrobium roseum DSM
           5159]
 gi|221157121|gb|ACM06248.1| transcription-repair coupling factor [Thermomicrobium roseum DSM
           5159]
          Length = 1165

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 44/225 (19%), Positives = 89/225 (39%), Gaps = 21/225 (9%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           + +   +A +   + RP +V+ P +  A +L            VE        +Q    +
Sbjct: 45  AARPAVLAALARILDRPLLVIVPRQAHADELADAVGQLLGEIPVEV-------WQAPETL 97

Query: 239 PRTDTYIEKESSINEQ---IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           P  D + +  +S  E+   + RM   +           +  +   +  +   ES     +
Sbjct: 98  P-YDVFAQDRASAVERSWFLQRMTEPSP-------GLFIAPARGLLQLLPPNESLRGCPL 149

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L++G  +  + +L  LV   Y    +    G+F   G  ++++P    D+A R+  FG+
Sbjct: 150 TLRVGQKMALQTVLDYLVDSGYAPVPLVQQPGSFSRRGGIVDVWPPG-NDLAVRIEFFGD 208

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
           +I+ I  F P T + +  + +I +   S    P P L  A   ++
Sbjct: 209 EIDSIRRFEPTTQRSVDRLHSIMLLPLSE--APLPQLQAAATKLR 251


>gi|209524916|ref|ZP_03273461.1| type III restriction protein res subunit [Arthrospira maxima
           CS-328]
 gi|209494565|gb|EDZ94875.1| type III restriction protein res subunit [Arthrospira maxima
           CS-328]
          Length = 493

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)

Query: 574 EINLAAQQGLRILLTVLTKRMAE--------DLTEYLYERNIRVRYMHSEVKTLERIEII 625
           EI L     LRIL  ++++   E        + T Y   ++  +  +  +    ER +I+
Sbjct: 315 EIALCTDGKLRILADIISQNHPERTLIFTVDNTTVYRISQDFLIPAITHQTPVKERHQIL 374

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NV 682
              R G++  LV  ++L EG+D+P+  +  IL         S+   IQ +GR  R     
Sbjct: 375 DKFRQGEYRTLVASHVLNEGVDVPDAKIAIILSGTG-----SEREYIQRLGRVLRKGSQT 429

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQ 711
             + +LY + IT++         RR  KQ
Sbjct: 430 GKRAVLY-EVITENTSEEQTSQRRRGHKQ 457


>gi|194744012|ref|XP_001954492.1| GF18290 [Drosophila ananassae]
 gi|190627529|gb|EDV43053.1| GF18290 [Drosophila ananassae]
          Length = 2252

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 551 EVLKRFRMHDCNVLIGTSILEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 605

Query: 683 NSKVILYADTI----TKSIQLAIDETTR 706
              VIL A +       S++L  DE+ R
Sbjct: 606 AYHVILVAPSFETPPVDSVELT-DESHR 632


>gi|125564407|gb|EAZ09787.1| hypothetical protein OsI_32075 [Oryza sativa Indica Group]
          Length = 685

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 12/125 (9%)

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R+AR QV  + D I   ++ G  I+ T  TK  A DL+  +       R +H +V   +R
Sbjct: 341 RAARAQV--IPDIIRCYSRGGRTIIFTE-TKESASDLSGLIAGS----RALHGDVAQAQR 393

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             I+   R GKF VLV  N+   GLDI +  L+   +       R   + I   GR  R 
Sbjct: 394 EVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPP-----RDVEAYIHRSGRTGRA 448

Query: 682 VNSKV 686
            N+ V
Sbjct: 449 GNTGV 453


>gi|115470561|ref|NP_001058879.1| Os07g0143700 [Oryza sativa Japonica Group]
 gi|113610415|dbj|BAF20793.1| Os07g0143700 [Oryza sativa Japonica Group]
          Length = 292

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 8/121 (6%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            G + ++   TKR A+ L  Y   R+   + +H ++   +R   +   R G+F++LV  +
Sbjct: 17  NGGKCIVFTQTKREADRLA-YAMGRSYACQALHGDISQNQRERTLSGFRDGRFNILVATD 75

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSIQ 698
           +   GLDIP   LV   +      L      +   GR AR     S +++Y +   ++++
Sbjct: 76  VAARGLDIPNVDLVIHYELPNTSEL-----FVHRSGRTARAGKKGSAILIYTNDQARAVR 130

Query: 699 L 699
           +
Sbjct: 131 I 131


>gi|89114022|gb|ABD61602.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550

Query: 683 NSKVIL----YADTITKSIQL 699
              VIL    Y      S+QL
Sbjct: 551 AYHVILVAPSYKSPTVGSVQL 571


>gi|89114030|gb|ABD61606.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550

Query: 683 NSKVIL----YADTITKSIQL 699
              VIL    Y      S+QL
Sbjct: 551 AYHVILVAPSYKSPTVGSVQL 571


>gi|71736642|ref|YP_274082.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557195|gb|AAZ36406.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 1150

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 55/277 (19%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           A +L  E K F P   V +F  +    YD + P       D   ++ +S+  ++  + H 
Sbjct: 51  AERLEQELKFFAPTLPVLHFPDWETLPYDLFSPH-----QDIISQRIASLY-RLPELEHG 104

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
                      +VV   + ++ +   +      + L +G  ++ + + + L    Y+  D
Sbjct: 105 ----------VLVVPITTALHRLAPTKFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVD 154

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
                G F V G  I++FP     + +R+ +F ++IE +  F P T + I  VE++++  
Sbjct: 155 TVYEHGEFTVRGALIDLFPMG-SKLPFRIDLFDDEIETLRTFDPDTQRSIDKVESVRL-- 211

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD------LEMLET 435
                                L  R   L+KE       R  +R   D       + L +
Sbjct: 212 ---------------------LPAREFPLQKEEVTRFKARFRERFDVDFRRSPIFQDLSS 250

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             +   IE Y          E   TLF+Y+P+D+ +F
Sbjct: 251 GITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF 282



 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VL+   ++  G+D+P  
Sbjct: 826 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 884 NTIIIERADKFGL----AQLHQLRGRVGRS 909


>gi|293367165|ref|ZP_06613836.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291318726|gb|EFE59101.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 949

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 563 SARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  +VE +  + N     G  L+ L+ V ++  A  L   L +R I    +  +     
Sbjct: 427 ASNERVEHIIKKTNYYGYSGDVLKGLIFVSSRGEAYQLANQLSKRGISSVGLTGKDSIAY 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E I+ L+ G  + ++ ++L  EG+DIPE   V +L   K   +      IQ +GR  R
Sbjct: 487 RTETIQQLKEGSINYIITVDLFNEGIDIPEINQVVMLRPTKSSII-----FIQQLGRGLR 541

Query: 681 NVNSK 685
              +K
Sbjct: 542 KSTNK 546


>gi|225450401|ref|XP_002278318.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296089875|emb|CBI39694.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P    S RT + D+   I + A+ G  I+ T  TKR A++++  L   +I    +H ++ 
Sbjct: 345 PTTATSKRTILSDL---ITVYAKGGKTIVFT-QTKRDADEVSMALTN-SIASEALHGDIS 399

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
             +R   +   R GKF VLV  ++   GLDIP   L+
Sbjct: 400 QHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 436


>gi|260836711|ref|XP_002613349.1| hypothetical protein BRAFLDRAFT_118736 [Branchiostoma floridae]
 gi|229298734|gb|EEN69358.1| hypothetical protein BRAFLDRAFT_118736 [Branchiostoma floridae]
          Length = 2342

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++ +++  R G ++VLV   +  EGLDI +  L+   DA K     S   L+Q +GR  
Sbjct: 514 EQLAVMKKFREGGYNVLVSTCVGEEGLDIGDVDLIVCFDAHK-----SPIRLVQRMGRTG 568

Query: 680 RNVNSKVIL 688
           R    ++++
Sbjct: 569 RKRQGRIVM 577


>gi|167626709|ref|YP_001677209.1| ATP-dependent DNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596710|gb|ABZ86708.1| ATP-dependent DNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 679

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 8/107 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            K + ++L E L + N+ + Y    +K+ ++I+ + D +  K+ VLV   ++  G+D+P 
Sbjct: 490 VKTLHKELAEALGKENVGLVY--GSMKSKDKIQEMSDFKAKKYKVLVATTVIEVGVDVPN 547

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
             ++ I +A++ G     + L Q  GR  R       ++LY+D I++
Sbjct: 548 ASIMIIDNAERLGI----SQLHQLRGRVGRGAKESYCILLYSDRISE 590



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAMQRP---A 196
           F  +  Y  +  Q   I ++L  I  S   ++LL G  G+GKT   A  +    +    A
Sbjct: 245 FYKKLPYQLTQAQQRTITEILADISQSSPMIRLLQGDVGAGKTIVAAMAVYTAVKSGYQA 304

Query: 197 IVMAPNKILAAQLYSEFKNFF 217
           +VMAP +ILA Q YS F ++ 
Sbjct: 305 VVMAPTEILAEQHYSFFVSYM 325


>gi|158337270|ref|YP_001518445.1| transcription-repair coupling factor [Acaryochloris marina
           MBIC11017]
 gi|158307511|gb|ABW29128.1| transcription-repair coupling factor [Acaryochloris marina
           MBIC11017]
          Length = 1164

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 87/204 (42%), Gaps = 28/204 (13%)

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            IV +  +    +  V+ +    + L+ G  ++ K L   L +  Y+R  +    G +  
Sbjct: 123 AIVTTERALQPHLPPVQIFEPYCLSLEAGIELDLKTLSDKLARLGYERVSLVETEGQWSR 182

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IFP   E +  R+  FG++++++ EF P + + + + E + +   S       +
Sbjct: 183 RGDIVDIFPVASE-LPIRLEWFGDELDKMREFDPTSQRSLDSSEKLTLTPTSFAPITLAS 241

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           L+                        EAQ+ + +  Y  E         ++E   R+L  
Sbjct: 242 LS------------------------EAQQAQVK-AYLTEEELALLETGTLEGSQRFLG- 275

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDE 475
               E P +L +Y+PE++L+ VDE
Sbjct: 276 -MAFETPASLLDYLPENTLVVVDE 298


>gi|115840564|ref|XP_785431.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 48
           [Strongylocentrotus purpuratus]
          Length = 360

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 219 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKEREAIMKEFR 273

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 274 SGASRVLITTDVWARGLDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 319


>gi|89114028|gb|ABD61605.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550

Query: 683 NSKVIL----YADTITKSIQL 699
              VIL    Y      S+QL
Sbjct: 551 AYHVILVAPSYKSPTVGSVQL 571


>gi|78186470|ref|YP_374513.1| DEAD/DEAH box helicase-like [Chlorobium luteolum DSM 273]
 gi|78166372|gb|ABB23470.1| ATP-dependent RNA helicase CsdA [Chlorobium luteolum DSM 273]
          Length = 590

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 8/158 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK M  +L E L  R      ++ ++   +R   +  L+ G  ++++  ++   
Sbjct: 252 MLIFVRTKTMTLELAEKLQARGYAAAALNGDMVQNQRERTVDQLKDGSLNIVIATDVAAR 311

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R+   + IL+     K++  AI+
Sbjct: 312 GLDVERISHVINYDVPYDTESYVHR----IGRTGRAGRS--GEAILFVAPREKNMLYAIE 365

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           + TR+R + +E      IN + +++    + D I  ED
Sbjct: 366 KATRKRIELMELPSTEIINDKRIEKFKQRISDTIAAED 403


>gi|312870458|ref|ZP_07730578.1| DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus oris
           PB013-T2-3]
 gi|311094015|gb|EFQ52339.1| DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus oris
           PB013-T2-3]
          Length = 457

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK  AE+LT YL E+ ++V  +H  ++   R  ++R +R   +  +V  +L   G+DI  
Sbjct: 254 TKERAEELTRYLSEQGLKVALIHGGLEPRRRKRVMRQIRNLDYQYVVATDLAARGIDIDG 313

Query: 651 CGLVA--ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILY 689
             LV    L  D E F       +  +GR  RN    + + LY
Sbjct: 314 VSLVINDDLPTDLEYF-------VHRVGRTGRNQMTGTAITLY 349


>gi|312978402|ref|ZP_07790144.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           crispatus CTV-05]
 gi|310894745|gb|EFQ43817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           crispatus CTV-05]
          Length = 495

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++    R+ +++  R GK D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTRGLQARGYNAAEIHGDLSQARRMSVLKRFREGKLDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 307 SGVTHVYNYD---IPQDPDSYVHRIGRTGR 333


>gi|296421581|ref|XP_002840343.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636558|emb|CAZ84534.1| unnamed protein product [Tuber melanosporum]
          Length = 1066

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 27/183 (14%)

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  ++IE+I+D ++G ++V+V  ++  EGLDI E  +  I+  D++G   S   L+Q +
Sbjct: 576 MKQKDQIEVIKDFQVGIYNVIVATSIGEEGLDIGEVDM--IICYDQQG---SSIRLLQRM 630

Query: 676 GRAARNVNSKV-ILYA-----DTITKS------IQLAIDETTRRREKQLEHNKKHNINPQ 723
           GR  R  +  V IL       D   ++      IQ  I+   R        N  H+++P+
Sbjct: 631 GRTGRKRDGHVHILLTQGKEEDNFKRATRDHEFIQGEIESGKR-------FNYHHDLSPR 683

Query: 724 SVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
            V   I  V+D  ++E  A  N   +  +  L K KGK   K  +K +        F  A
Sbjct: 684 IVPRDIECVVDRKVIEIPA-ENTQPEPPKRKL-KGKGK-QTKVTKKFLMPDGVKTGFVRA 740

Query: 784 ARI 786
           +RI
Sbjct: 741 SRI 743


>gi|288917959|ref|ZP_06412318.1| transcription-repair coupling factor [Frankia sp. EUN1f]
 gi|288350614|gb|EFC84832.1| transcription-repair coupling factor [Frankia sp. EUN1f]
          Length = 1189

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           V L  GDS + +E+ + LV   Y R D+   RG   V G  +++FP   E+   R+  FG
Sbjct: 147 VALAKGDSADLEEVTARLVGIAYHRVDLVERRGEIAVRGGILDVFPP-TEEHPLRIEFFG 205

Query: 355 NDIEEISEF 363
           +++E+I  F
Sbjct: 206 DEVEDIRHF 214


>gi|241663171|ref|YP_002981531.1| transcription-repair coupling factor [Ralstonia pickettii 12D]
 gi|240865198|gb|ACS62859.1| transcription-repair coupling factor [Ralstonia pickettii 12D]
          Length = 1143

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 41/219 (18%), Positives = 92/219 (42%), Gaps = 26/219 (11%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAI----VMAPNKILAAQLYSEFKNFFPHNAVEYFVSY-- 228
           G+ G+     +A+ +E   R  +    V+  N + A +L  E + F P   V+    +  
Sbjct: 22  GLQGAADALLLARYLE-QHRATVPMLAVVCANAVDAQRLAEELRWFAPQARVKLLPDWET 80

Query: 229 --YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
             YD + P       D   E+ +++++    +++ A        D ++V + + +  +  
Sbjct: 81  LPYDNFSPH-----QDLISERLATLHD----LQNGAC-------DILLVPASTALQRVAP 124

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
               +      K G+ +++  L +      Y+     +  G + V G  I++FP     +
Sbjct: 125 PSFLAAYTFFFKKGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMG-SPL 183

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
            +R+ +FG++IE I  F P T + +  V  +++     +
Sbjct: 184 PYRLDLFGDEIETIRSFDPDTQRSLYPVNEVRLLPGREF 222


>gi|238619266|ref|YP_002914091.1| type III restriction protein res subunit [Sulfolobus islandicus
           M.16.4]
 gi|238380335|gb|ACR41423.1| type III restriction protein res subunit [Sulfolobus islandicus
           M.16.4]
          Length = 666

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 599 TEYLYERNI----RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           T Y +ER I    +V+ +  +    ER++++++LR G+ DVL+   +  EG+DIPE  L+
Sbjct: 306 TAYEFERAISDLGKVKVITGDSSRYERLKVVQNLRKGEIDVLISTIVGEEGIDIPEAKLL 365

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681
            + D       +S     Q +GR  R 
Sbjct: 366 IMTDVP-----QSALRFYQRLGRLIRG 387


>gi|258564346|ref|XP_002582918.1| eukaryotic initiation factor 4A-6 [Uncinocarpus reesii 1704]
 gi|237908425|gb|EEP82826.1| eukaryotic initiation factor 4A-6 [Uncinocarpus reesii 1704]
          Length = 398

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 273 TRRKVDWLTDKLIARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 332

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 333 VSLVINYDLPANRENYI 349


>gi|89114024|gb|ABD61603.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550

Query: 683 NSKVIL----YADTITKSIQL 699
              VIL    Y      S+QL
Sbjct: 551 AYHVILVAPSYKSPTVGSVQL 571


>gi|89114020|gb|ABD61601.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 496 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 550

Query: 683 NSKVIL----YADTITKSIQL 699
              VIL    Y      S+QL
Sbjct: 551 AYHVILVAPSYKSPTVGSVQL 571


>gi|323476830|gb|ADX82068.1| type III restriction protein res subunit [Sulfolobus islandicus
           HVE10/4]
          Length = 666

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 599 TEYLYERNI----RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           T Y +ER I    +V+ +  +    ER++++++LR G+ DVL+   +  EG+DIPE  L+
Sbjct: 306 TAYEFERAISDLGKVKVITGDSSRYERLKVVQNLRKGEIDVLISTIVGEEGIDIPEAKLL 365

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681
            + D       +S     Q +GR  R 
Sbjct: 366 IMTDVP-----QSALRFYQRLGRLIRG 387


>gi|320583085|gb|EFW97301.1| ATP-dependent RNA helicase DED1 [Pichia angusta DL-1]
          Length = 2471

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+MA+ L+++L  ++     +H +    ER   +   R G+  +LV   +   G
Sbjct: 400 LIFVETKKMADILSDFLINQDFPATSIHGDRSQYERERALESFRTGRTPILVATAVAARG 459

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ V
Sbjct: 460 LDIPNVTHVVNYDLPND-----IDDYVHRIGRTGRAGNTGV 495


>gi|319642140|ref|ZP_07996803.1| hypothetical protein HMPREF9011_02403 [Bacteroides sp. 3_1_40A]
 gi|317386233|gb|EFV67149.1| hypothetical protein HMPREF9011_02403 [Bacteroides sp. 3_1_40A]
          Length = 759

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R  +E +Y  +   A  G + ++  ++   A  + EY   R +    + S+   +ER  +
Sbjct: 207 RPGIERLYRSVRQFAS-GKKGMVYAISIEHARRIAEYYSRRGVNAVAVDSKTPAMERKRM 265

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + R GK +VLV +++  EG D P+   V +          S    +Q +GR  R    
Sbjct: 266 VEEFRHGKIEVLVNVDVFSEGFDCPDVEFVQLARPTL-----SLAKYLQQVGRGLRRSEG 320

Query: 685 K 685
           K
Sbjct: 321 K 321


>gi|299144503|ref|ZP_07037582.1| ATP-dependent DNA helicase RecG [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298517591|gb|EFI41331.1| ATP-dependent DNA helicase RecG [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 680

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 5/94 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y  +IRV  +H ++ + E+  +++D + G  D++V   ++  G+++P   ++ I +A++ 
Sbjct: 496 YFSDIRVALLHGKMSSDEKNSVMQDFKDGCTDIIVSTTVIEVGVNVPNATVILIYNAERF 555

Query: 663 GFLRSKTSLIQTIGRAARNVN-SKVILYADTITK 695
           G       L Q  GR  R+V+ S  ILY  + +K
Sbjct: 556 GL----AQLHQLRGRVGRSVHKSYCILYNSSNSK 585


>gi|282876512|ref|ZP_06285378.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus
           epidermidis SK135]
 gi|281294764|gb|EFA87292.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus
           epidermidis SK135]
 gi|329735713|gb|EGG71996.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU028]
          Length = 509

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 4/122 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
            G+  + + D      S T  I   GRA +      + + + I       I++   RR K
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK--EGIAVTFVNPIEMDYIRQIEDVNNRRMK 364

Query: 711 QL 712
            L
Sbjct: 365 AL 366


>gi|296807429|ref|XP_002844208.1| eukaryotic initiation factor 4A [Arthroderma otae CBS 113480]
 gi|238843691|gb|EEQ33353.1| eukaryotic initiation factor 4A [Arthroderma otae CBS 113480]
          Length = 395

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 271 TRRKVDWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 330

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 331 VSLVINYDLPANRENYI 347


>gi|317139883|ref|XP_001817822.2| ATP-dependent DNA helicase mph1 [Aspergillus oryzae RIB40]
 gi|189082536|sp|Q2URJ5|MPH1_ASPOR RecName: Full=ATP-dependent DNA helicase mph1
          Length = 1129

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 15/120 (12%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYL--YERNIR--VRYMHSEVKTLE------RIEIIRDL 628
           +Q   RI++ V  +  AE++T  L  YE  IR  V    S  K  E      +++I++  
Sbjct: 692 SQSSTRIMIFVHFRDSAEEVTRVLKRYEPMIRPHVFVGQSSAKGSEGMGQKTQLDIVQKF 751

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G ++ +V  ++  EGLDI E  L+   D+       S   ++Q +GR  R     ++L
Sbjct: 752 KKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSA-----SPIRMLQRMGRTGRKRAGNIVL 806


>gi|183979315|dbj|BAG30754.1| DEAD box polypeptide 5 [Papilio xuthus]
          Length = 539

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 6/117 (5%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           EI  + + G + ++ V TKR  E++T  +         MH +    ER +++   + G+ 
Sbjct: 348 EIGQSQEPGAKTIIFVETKRKVENITRNIRRFGWPAVCMHGDKTQQERDDVLYQFKQGRA 407

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            +LV  ++   GLD+   G+  +++ D   +  S    I  IGR  R+  SK   YA
Sbjct: 408 SILVATDVAARGLDVD--GIKYVINFD---YPNSSEDYIHRIGRTGRS-KSKGTSYA 458


>gi|169850031|ref|XP_001831713.1| ATP-dependent RNA helicase ded-1 [Coprinopsis cinerea okayama7#130]
 gi|116507149|gb|EAU90044.1| ATP-dependent RNA helicase ded-1 [Coprinopsis cinerea okayama7#130]
          Length = 653

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L   N+    +H +    ER   ++  R G+  ++V   +   G
Sbjct: 437 LVFVETKRMADMLSDFLIGNNMPATSIHGDRTQREREMALQTFRTGRTPIMVATAVAARG 496

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N  V
Sbjct: 497 LDIPNVTHVVNYDLPSD-----IDDYVHRIGRTGRAGNVGV 532


>gi|60115443|dbj|BAD90012.1| DEAD box RNA helicase [Tubifex tubifex]
          Length = 396

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +N   QQ  R L+ V  KR A+ +  YL +       +H + +  ER E +RD + G   
Sbjct: 206 LNSQGQQ--RTLVFVEQKRQADFIASYLSQSEFPTTSIHGDREQREREEALRDFKNGTAP 263

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +LV  ++   GLDIP  G+  +++ D     +S    +  IGR  R  N
Sbjct: 264 ILVATSVAARGLDIP--GVNHVINFDMP---QSIDEYVHRIGRTGRCGN 307


>gi|94984652|ref|YP_604016.1| transcription factor CarD [Deinococcus geothermalis DSM 11300]
 gi|94554933|gb|ABF44847.1| transcription factor CarD [Deinococcus geothermalis DSM 11300]
          Length = 1041

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 593 RMAEDLTEYLYERNI----RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           R+A      LY RN+    R+   H  +   E  EI+     G FDVL+   ++  GLDI
Sbjct: 724 RIASIGARSLYLRNLVPEARIGVAHGRMNEEELEEIMLGFEQGAFDVLLSTTIVETGLDI 783

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQ 698
           PE   + I  AD+ G       L Q  GR  R   +    + Y   +T++ Q
Sbjct: 784 PEANTILIERADRLGL----AQLYQLRGRVGRRQQTAYAYLFYPPRMTENAQ 831


>gi|332089282|gb|EGI94388.1| transcription-repair coupling factor [Shigella boydii 5216-82]
          Length = 1148

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 121/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+  T  +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACTTLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|329734596|gb|EGG70907.1| helicase C-terminal domain protein [Staphylococcus epidermidis
           VCU045]
          Length = 952

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 563 SARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  +VE +  + N     G  L+ L+ V ++  A  L   L +R I    +  +     
Sbjct: 430 ASNERVEHIIKKTNYYGYSGDVLKGLIFVSSRGEAYQLANQLSKRGISSVGLTGKDSIAY 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E I+ L+ G  + ++ ++L  EG+DIPE   V +L   K   +      IQ +GR  R
Sbjct: 490 RTETIQQLKEGSINYIITVDLFNEGIDIPEINQVVMLRPTKSSII-----FIQQLGRGLR 544

Query: 681 NVNSK 685
              +K
Sbjct: 545 KSTNK 549


>gi|329956671|ref|ZP_08297244.1| primosomal protein [Bacteroides clarus YIT 12056]
 gi|328524043|gb|EGF51119.1| primosomal protein [Bacteroides clarus YIT 12056]
          Length = 820

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  G
Sbjct: 615 IIADFEQGKTDILIGTQMVSKGLDFDHVNVVGILNADTMLNYPDFRAYERAFQLMAQVAG 674

Query: 677 RAAR-NVNSKVILYADTITKSI 697
           RA R N   +V+L   +I   I
Sbjct: 675 RAGRKNKRGRVVLQTKSIDHLI 696


>gi|323474095|gb|ADX84701.1| type III restriction protein res subunit [Sulfolobus islandicus
           REY15A]
          Length = 666

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 599 TEYLYERNI----RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           T Y +ER I    +V+ +  +    ER++++++LR G+ DVL+   +  EG+DIPE  L+
Sbjct: 306 TAYEFERAISDLGKVKVITGDSSRYERLKVVQNLRKGEIDVLISTIVGEEGIDIPEAKLL 365

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681
            + D       +S     Q +GR  R 
Sbjct: 366 IMTDVP-----QSALRFYQRLGRLIRG 387


>gi|323359428|ref|YP_004225824.1| transcription-repair coupling factor [Microbacterium testaceum
           StLB037]
 gi|323275799|dbj|BAJ75944.1| transcription-repair coupling factor [Microbacterium testaceum
           StLB037]
          Length = 1195

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 22/173 (12%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+AP    A  L        P   V +F ++ +    E   P  +T       +  ++D
Sbjct: 57  LVIAPTGRRAESLGPALDAVLPGAQVLHFPAW-ETLPHERLSPSPET-------VGRRLD 108

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSS 311
            +R  A  +       +V +SV         G+G V       V+L +G    + E +++
Sbjct: 109 VLRRIAAWN--GEAPLVVTASVRSALQPLAPGLGDVAP-----VELTVGGRGHELEAVTT 161

Query: 312 -LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            LV+  Y R D+   RG F V G  +++FP  + D  +RV  FG+++++I  F
Sbjct: 162 RLVELAYHRVDMVSRRGEFAVRGGILDVFPP-VADHPYRVEFFGDEVDQIRAF 213


>gi|261880679|ref|ZP_06007106.1| ATP-dependent RNA helicase DeaD [Prevotella bergensis DSM 17361]
 gi|270332631|gb|EFA43417.1| ATP-dependent RNA helicase DeaD [Prevotella bergensis DSM 17361]
          Length = 560

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K+  + + + L +  I    MHS++   +R +I+   + G+ DVLV  +++ 
Sbjct: 247 RVIIFSGSKQKVKQINQALAQLKINSGEMHSDLDQSQRDDIMYKFKSGQIDVLVATDIVA 306

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +  +V   D       R     +  IGR AR
Sbjct: 307 RGIDIDDIAMVINYD-----VPRDSEDYVHRIGRTAR 338


>gi|269861249|ref|XP_002650337.1| ATP-dependent RNA helicase [Enterocytozoon bieneusi H348]
 gi|220066220|gb|EED43712.1| ATP-dependent RNA helicase [Enterocytozoon bieneusi H348]
          Length = 419

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 8/131 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++ V +K+M + +          V  +H +V   +R   + +    K  +LV  ++  
Sbjct: 276 QVIIFVNSKKMVDIIYNVFSADGFTVSKLHGDVPLADRDLTLANFAQAKTKILVTTDVFS 335

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA------DTITKS 696
            G+DIP+  L+   D   + F  S  + I  IGR+ R N    VI +       +T+ K 
Sbjct: 336 RGMDIPQVNLIVNFDLPIDTFGNSIETYIHRIGRSGRFNRKGFVIDFISNGDDLETLVK- 394

Query: 697 IQLAIDETTRR 707
           IQ +I+ET+++
Sbjct: 395 IQASINETSKK 405


>gi|3914013|sp|O52236|MFD_MYXXA RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|2736296|gb|AAB94134.1| transcription-repair coupling factor [Myxococcus xanthus]
          Length = 1201

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 10/127 (7%)

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
           +  ++ +G   ++  L   LV+  Y+   +    GTF V GD +++F S L D   R+  
Sbjct: 161 LAARVAVGQDFDRDSLARRLVRMGYQNSPLVEDVGTFSVRGDLLDVF-SPLYDKPVRLEF 219

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIK----IYANSHYVT--PRPTLNTAMKYIKEELKMR 406
           FG+ IE I  F P   Q  R V+ +K    + A    +T   RP   +A + + + + + 
Sbjct: 220 FGDTIESIRAFDP---QSQRTVDALKEVDLVPAREVLLTDETRPRAESAARAVADRINLP 276

Query: 407 LIELEKE 413
            I+L ++
Sbjct: 277 TIKLREQ 283


>gi|326519741|dbj|BAK00243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 649

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 6/114 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D+I    + G ++++   TKRM + L+  L  R      +H +    ER  ++ + R G+
Sbjct: 397 DQILRQQEPGSKVIIFCSTKRMCDQLSRNL-SRQYGASAIHGDKSQAERDSVLSEFRTGR 455

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             +LV  ++   GLD+ +  +V   D     F       +  IGR  R   S +
Sbjct: 456 CPILVATDVAARGLDVKDIRVVVNYD-----FPTGVEDYVHRIGRTGRAGASGI 504


>gi|326472675|gb|EGD96684.1| ATP-dependent RNA helicase DED1 [Trichophyton tonsurans CBS 112818]
          Length = 582

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+E+L  ++     +H +    ER   +   R G+  +LV   +   G
Sbjct: 412 LIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARG 471

Query: 646 LDIPECGLVAI 656
           LDIP    V I
Sbjct: 472 LDIPNVTHVNI 482


>gi|325685125|gb|EGD27254.1| helicase [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 916

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 7/120 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRM--AEDLTEYLYERNIRVRYMHSEVKTLE 620
            A+ +V  +  E++     G R    V   R   A+ L E   ++    + + ++     
Sbjct: 388 GAKKRVSYLLKELDYYGYSGPRPCGLVFCSRQEEAQQLAEAFTQQGQPAQALTNQDSPAV 447

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R + ++DL  G+   LV ++L  EG+DIP    + +L A +     S T  IQ +GR  R
Sbjct: 448 RRQAVKDLESGRLHYLVTVDLFNEGVDIPALNQIVMLRATQ-----SATVFIQQLGRGLR 502


>gi|238483465|ref|XP_002372971.1| DEAD box helicase Mph1, putative [Aspergillus flavus NRRL3357]
 gi|220701021|gb|EED57359.1| DEAD box helicase Mph1, putative [Aspergillus flavus NRRL3357]
          Length = 1129

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 15/120 (12%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYL--YERNIR--VRYMHSEVKTLE------RIEIIRDL 628
           +Q   RI++ V  +  AE++T  L  YE  IR  V    S  K  E      +++I++  
Sbjct: 692 SQSSTRIMIFVHFRDSAEEVTRVLKRYEPMIRPHVFVGQSSAKGSEGMGQKTQLDIVQKF 751

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G ++ +V  ++  EGLDI E  L+   D+       S   ++Q +GR  R     ++L
Sbjct: 752 KKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSA-----SPIRMLQRMGRTGRKRAGNIVL 806


>gi|183981755|ref|YP_001850046.1| ATP-dependent DNA helicase RecG [Mycobacterium marinum M]
 gi|183175081|gb|ACC40191.1| ATP-dependent DNA helicase RecG [Mycobacterium marinum M]
          Length = 743

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  MH  +   E+   +   R G  DVLV   ++  G+D+P   ++ ++DAD+ G  
Sbjct: 558 GLRLALMHGRLSADEKEAAMAAFRAGNVDVLVCTTVIEVGVDVPNATVMLVMDADRFGI- 616

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTIT 694
              + L Q  GR  R  +  + L A  ++
Sbjct: 617 ---SQLHQLRGRIGRGEHPSLCLLASWVS 642


>gi|160884579|ref|ZP_02065582.1| hypothetical protein BACOVA_02566 [Bacteroides ovatus ATCC 8483]
 gi|237718558|ref|ZP_04549039.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|260174903|ref|ZP_05761315.1| ATP-dependent RNA helicase [Bacteroides sp. D2]
 gi|299145716|ref|ZP_07038784.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
 gi|315923146|ref|ZP_07919386.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156110318|gb|EDO12063.1| hypothetical protein BACOVA_02566 [Bacteroides ovatus ATCC 8483]
 gi|229452018|gb|EEO57809.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|298516207|gb|EFI40088.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
 gi|313697021|gb|EFS33856.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 422

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 9/107 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   +++ + L    + V  MHS+++  +R  ++ + + G+ ++LV  +++ 
Sbjct: 246 RVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRINILVATDIVA 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+DI +  LV   D   D E +       +  IGR AR  N  V L
Sbjct: 306 RGIDIDDIRLVINFDVPHDSEDY-------VHRIGRTARANNDGVAL 345


>gi|150004949|ref|YP_001299693.1| hypothetical protein BVU_2412 [Bacteroides vulgatus ATCC 8482]
 gi|149933373|gb|ABR40071.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
          Length = 751

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R  +E +Y  +   A  G + ++  ++   A  + EY   R +    + S+   +ER  +
Sbjct: 199 RPGIERLYRSVRQFAS-GKKGMVYAISIEHARRIAEYYSRRGVNAVAVDSKTPAMERKRM 257

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + R GK +VLV +++  EG D P+   V +          S    +Q +GR  R    
Sbjct: 258 VEEFRHGKIEVLVNVDVFSEGFDCPDVEFVQLARPTL-----SLAKYLQQVGRGLRRSEG 312

Query: 685 K 685
           K
Sbjct: 313 K 313


>gi|312194532|ref|YP_004014593.1| transcription-repair coupling factor [Frankia sp. EuI1c]
 gi|311225868|gb|ADP78723.1| transcription-repair coupling factor [Frankia sp. EuI1c]
          Length = 1215

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           V L+ GDS +  +++  LV   Y R D+   RG   V G  +++FP   E+   RV  FG
Sbjct: 166 VLLRSGDSADLADVVERLVGIAYHRVDLVERRGQIAVRGGILDVFPPT-EEHPLRVEFFG 224

Query: 355 NDIEEISEF 363
           ++IE+I  F
Sbjct: 225 DEIEDIRPF 233


>gi|257082654|ref|ZP_05577015.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
 gi|256990684|gb|EEU77986.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
          Length = 449

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 82/155 (52%), Gaps = 14/155 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++T+YL ++ ++V  +H ++   ER  ++R ++   +  +V  +L   G+DI  
Sbjct: 252 TKQTVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAARGIDIE- 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNV--NSKVILYA----DTITKSIQLAIDET 704
            G+  +++A+    L      I  +GR  RN    + + LY+    + IT+  QL +  +
Sbjct: 311 -GVSHVINAEVPHEL---DFFIHRVGRTGRNGLNGTAITLYSPADDEAITQIEQLGV--S 364

Query: 705 TRRRE-KQLEHNKKHNINPQSVKEKIMEVIDPILL 738
            + +E K  E  + ++ N ++ +EK  E +DP L+
Sbjct: 365 FKPKEIKNGEIVETYDRNRRTKREKSREELDPTLI 399


>gi|108711873|gb|ABF99668.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
           Japonica Group]
          Length = 596

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 73/144 (50%), Gaps = 14/144 (9%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+   S RT + D+   I + A+ G  I+ T  TKR A++++  L   +I    +H ++ 
Sbjct: 170 PLTSTSKRTVLSDL---ITVYAKGGKTIVFTK-TKRDADEVSLALTN-SIASEALHGDIS 224

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI--LDADKEGFL-RSKTSLIQT 674
             +R   +   R GKF VLV  ++   GLDIP   L+    L  D E F+ RS  +    
Sbjct: 225 QHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT---- 280

Query: 675 IGRAARNVNSKVILYADTITKSIQ 698
            GRA +   + ++++ ++  ++++
Sbjct: 281 -GRAGK-AGTAILMFTNSQRRTVR 302


>gi|108800931|ref|YP_641128.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119870071|ref|YP_940023.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           KMS]
 gi|126436556|ref|YP_001072247.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           JLS]
 gi|108771350|gb|ABG10072.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. MCS]
 gi|119696160|gb|ABL93233.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. KMS]
 gi|126236356|gb|ABN99756.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. JLS]
          Length = 557

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 70/153 (45%), Gaps = 8/153 (5%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  +QG  +++ V TK+  E++ E L  R      ++ ++    R   I  L+ G  D+L
Sbjct: 246 LETEQGDGMIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTISQLKDGSIDIL 305

Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           V  ++   GLD+     V   D   D E ++      I   GRA R  +   +L+     
Sbjct: 306 VATDVAARGLDVERISHVVNFDIPHDPESYVHR----IGRTGRAGR--SGTALLFVTPRE 359

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           + +  +I+  TR++  +++     ++N Q V++
Sbjct: 360 RHLLNSIERVTRQKLVEIQLPSVEDVNAQRVEK 392


>gi|330820078|ref|YP_004348940.1| DEAD/H associated domain protein [Burkholderia gladioli BSR3]
 gi|327372073|gb|AEA63428.1| DEAD/H associated domain protein [Burkholderia gladioli BSR3]
          Length = 1663

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSE 615
           P+E   A    E +YD I   A      L+ V T+RMAE L  +L ER     +   H  
Sbjct: 348 PLEPVMANDVWERIYDRIAELAAAHRTTLVFVNTRRMAERLARHLGERLGQQAIAAHHGS 407

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R++  + L+ G+  +LV    L  G+DI E  LV  +     G  R     +Q +
Sbjct: 408 LAKEARLDAEQRLKRGELKLLVATASLELGIDIGEVELVCQI-----GSPRGIAPFLQRV 462

Query: 676 GRAARNVNS 684
           GR+   V  
Sbjct: 463 GRSGHQVGG 471


>gi|298484048|ref|ZP_07002217.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
 gi|298269829|gb|EFI11421.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
          Length = 420

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 9/107 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   +++ + L    + V  MHS+++  +R  ++ + + G+ ++LV  +++ 
Sbjct: 246 RVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRINILVATDIVA 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+DI +  LV   D   D E +       +  IGR AR  N  V L
Sbjct: 306 RGIDIDDIRLVINFDVPHDSEDY-------VHRIGRTARANNDGVAL 345


>gi|302409340|ref|XP_003002504.1| ATP-dependent RNA helicase DBP3 [Verticillium albo-atrum VaMs.102]
 gi|261358537|gb|EEY20965.1| ATP-dependent RNA helicase DBP3 [Verticillium albo-atrum VaMs.102]
          Length = 571

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RIL+  L K+ A  +  +L +R I V  +H +++  +R   +   + G   V+V  ++  
Sbjct: 434 RILVFCLYKKEATRVEGFLQQRGIHVCGIHGDLRQDQRTRSLEAFKSGSTSVMVATDVAA 493

Query: 644 EGLDIPECGLV 654
            GLDIPE  LV
Sbjct: 494 RGLDIPEVKLV 504


>gi|227877601|ref|ZP_03995655.1| ATP-dependent RNA helicase [Lactobacillus crispatus JV-V01]
 gi|256844556|ref|ZP_05550042.1| RNA helicase [Lactobacillus crispatus 125-2-CHN]
 gi|256849055|ref|ZP_05554488.1| RNA helicase [Lactobacillus crispatus MV-1A-US]
 gi|262047537|ref|ZP_06020492.1| RNA helicase [Lactobacillus crispatus MV-3A-US]
 gi|293381585|ref|ZP_06627572.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
 gi|227862795|gb|EEJ70260.1| ATP-dependent RNA helicase [Lactobacillus crispatus JV-V01]
 gi|256613634|gb|EEU18837.1| RNA helicase [Lactobacillus crispatus 125-2-CHN]
 gi|256713831|gb|EEU28819.1| RNA helicase [Lactobacillus crispatus MV-1A-US]
 gi|260572113|gb|EEX28678.1| RNA helicase [Lactobacillus crispatus MV-3A-US]
 gi|290921855|gb|EFD98870.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
          Length = 453

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++LT YL ++ ++V  +H  V   ER   +R +  G++  +V  +L   GLDI  
Sbjct: 253 TKQKVDELTNYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQYVVASDLAARGLDIDG 312

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +       R    +I  IGR  RN
Sbjct: 313 VSLVVNYE-----IPRDIEFVIHRIGRTGRN 338


>gi|227827099|ref|YP_002828878.1| type III restriction protein res subunit [Sulfolobus islandicus
           M.14.25]
 gi|229584267|ref|YP_002842768.1| type III restriction protein res subunit [Sulfolobus islandicus
           M.16.27]
 gi|227458894|gb|ACP37580.1| type III restriction protein res subunit [Sulfolobus islandicus
           M.14.25]
 gi|228019316|gb|ACP54723.1| type III restriction protein res subunit [Sulfolobus islandicus
           M.16.27]
          Length = 666

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 599 TEYLYERNI----RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           T Y +ER I    +V+ +  +    ER++++++LR G+ DVL+   +  EG+DIPE  L+
Sbjct: 306 TAYEFERAISDLGKVKVITGDSSRYERLKVVQNLRKGEIDVLISTIVGEEGIDIPEAKLL 365

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681
            + D       +S     Q +GR  R 
Sbjct: 366 IMTDVP-----QSALRFYQRLGRLIRG 387


>gi|219113631|ref|XP_002186399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583249|gb|ACI65869.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 414

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + L E + +R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 289 TRRKVDWLQEEMQKRDFTVSCMHGDMDQRERDIIMREFRSGSSRVLITTDLLARGIDVQQ 348

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        ++ + I  IGR+ R
Sbjct: 349 VSLVINFDLPT-----NRENYIHRIGRSGR 373


>gi|119580652|gb|EAW60248.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_h [Homo
           sapiens]
          Length = 547

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 231 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 290

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N
Sbjct: 291 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN 332


>gi|296272208|ref|YP_003654839.1| transcription-repair coupling factor [Arcobacter nitrofigilis DSM
           7299]
 gi|296096383|gb|ADG92333.1| transcription-repair coupling factor [Arcobacter nitrofigilis DSM
           7299]
          Length = 989

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           NI++  +HS++  ++  ++I D   GKFD+L+  +++  GL +P    + I  AD+ G  
Sbjct: 712 NIKIEMIHSKITQVKAEKLIEDFNDGKFDILLATSIVESGLHLPNANSMIIDGADRFGI- 770

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R 
Sbjct: 771 ---ADLHQLRGRVGRG 783


>gi|288921130|ref|ZP_06415419.1| helicase domain protein [Frankia sp. EUN1f]
 gi|288347506|gb|EFC81794.1| helicase domain protein [Frankia sp. EUN1f]
          Length = 742

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           LTK  AE+LT +L  +   V   H   +  ERI    DL   +   L+  + L  G D P
Sbjct: 285 LTKPAAEELTGFLRAQGHTVATYHGGTEPAERIAAEEDLLANRVKALIATSALGMGFDKP 344

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + G V  + A       S  +  Q +GRA R + S
Sbjct: 345 DLGFVVHVGAPN-----SPIAYYQQVGRAGRALES 374


>gi|284997137|ref|YP_003418904.1| type III restriction enzyme, res subunit [Sulfolobus islandicus
           L.D.8.5]
 gi|284445032|gb|ADB86534.1| type III restriction enzyme, res subunit [Sulfolobus islandicus
           L.D.8.5]
          Length = 666

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 599 TEYLYERNI----RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           T Y +ER I    +V+ +  +    ER++++++LR G+ DVL+   +  EG+DIPE  L+
Sbjct: 306 TAYEFERAISDLGKVKVITGDSSRYERLKVVQNLRKGEIDVLISTIVGEEGIDIPEAKLL 365

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681
            + D       +S     Q +GR  R 
Sbjct: 366 IMTDVP-----QSALRFYQRLGRLIRG 387


>gi|256082050|ref|XP_002577276.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238662581|emb|CAZ33513.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 612

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++L  +   R+L+   TKR  + +  YLY   +R   +H +     R + +   R G  +
Sbjct: 415 LDLCGESVCRVLVFCNTKREVDQIDNYLYSNGVRSTSIHGDKNQYSRAKSLDLFRKGTAN 474

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           VL+  ++   G+DIP   + A+++    G        +  IGR  R
Sbjct: 475 VLIASSVAARGIDIPN--VFAVINI---GLPNELDDYVHRIGRTGR 515


>gi|229582539|ref|YP_002840938.1| type III restriction protein res subunit [Sulfolobus islandicus
           Y.N.15.51]
 gi|228013255|gb|ACP49016.1| type III restriction protein res subunit [Sulfolobus islandicus
           Y.N.15.51]
          Length = 666

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 599 TEYLYERNI----RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           T Y +ER I    +V+ +  +    ER++++++LR G+ DVL+   +  EG+DIPE  L+
Sbjct: 306 TAYEFERAISDLGKVKVITGDSSRYERLKVVQNLRKGEIDVLISTIVGEEGIDIPEAKLL 365

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681
            + D       +S     Q +GR  R 
Sbjct: 366 IMTDVP-----QSALRFYQRLGRLIRG 387


>gi|149914018|ref|ZP_01902550.1| Possible DNA helicase [Roseobacter sp. AzwK-3b]
 gi|149812302|gb|EDM72133.1| Possible DNA helicase [Roseobacter sp. AzwK-3b]
          Length = 1703

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 9/128 (7%)

Query: 566 TQVEDVYD--EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           T++ D+ D  E  L ++     ++   T+   E + E+L ++ I     H+ +   ++ E
Sbjct: 507 TKMADILDAIEAQLPSEGVSGAVVYCATRNATERVAEFLKQQGIAAERYHAGLSADDKRE 566

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           I  D R+G   V+   N    G+D P+  LV  + AD  G L    + +Q  GRA R+  
Sbjct: 567 IQEDFRVGNLRVIAATNAFGMGVDKPDIRLV--VHADVPGSLE---NYLQEAGRAGRDRE 621

Query: 684 SK--VILY 689
           S   V+L+
Sbjct: 622 SANCVLLF 629


>gi|145256950|ref|XP_001401571.1| ATP-dependent RNA helicase ded1 [Aspergillus niger CBS 513.88]
 gi|134034089|sp|A2QI25|DED1_ASPNC RecName: Full=ATP-dependent RNA helicase ded1
 gi|134058481|emb|CAL00690.1| unnamed protein product [Aspergillus niger]
          Length = 678

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L  +      +H +    ER   +   R G+  +LV   +   G
Sbjct: 453 LIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARG 512

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 513 LDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 548


>gi|325200091|gb|ADY95546.1| transcription-repair coupling factor [Neisseria meningitidis
           H44/76]
          Length = 1379

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 113/283 (39%), Gaps = 35/283 (12%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  +   A +L + +  F PH+    F+  ++    E + P  D   E+ S++ +   
Sbjct: 37  VVLTQDAEQALRLQTAWLFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ--- 92

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            ++  A        D + V   + +  +  V   +     LK G +++   L S LV   
Sbjct: 93  -IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDAG 144

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  
Sbjct: 145 YNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTISPVSE 203

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           I++     +    PT + A K  +   +  +     +  + +A               + 
Sbjct: 204 IRLLPAHEF----PTDSEAQKIFRSRFREEVDGNPNDAAVYKAV--------------SN 245

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF-VDESHV 478
           G   +   Y   L   N  E   TLF+YI ED+L   +D+ H 
Sbjct: 246 GHFGAGVEYYLPLFFENELE---TLFDYIGEDALFVSLDDVHA 285



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 1070 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1126

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 1127 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1162


>gi|323141155|ref|ZP_08076056.1| primosomal protein N' [Phascolarctobacterium sp. YIT 12067]
 gi|322414298|gb|EFY05116.1| primosomal protein N' [Phascolarctobacterium sp. YIT 12067]
          Length = 758

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 15/133 (11%)

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------R 666
           S V      +I+R    G  +VL+G  ++ +G DIP   LV +L AD    L       R
Sbjct: 544 STVAKFAHADILRRFADGAANVLIGTQMVAKGHDIPNVTLVGVLAADSTLHLPDYRASER 603

Query: 667 SKTSLIQTIGRAARNVNSKVILYA--DTITKSIQLAIDE---TTRRREKQLEHNKKHNIN 721
           + + L Q  GRA R      +++   D     +QLA+ +   T  +RE Q    +K+   
Sbjct: 604 AFSLLTQAAGRAGRGDRPGHVIFQTYDPDNPILQLAVTQDYDTFAKRELQ---ERKNYFY 660

Query: 722 PQSVKEKIMEVID 734
           P   +   ++V+D
Sbjct: 661 PPFAQMLKLQVVD 673


>gi|291296567|ref|YP_003507965.1| ATP-dependent DNA helicase RecG [Meiothermus ruber DSM 1279]
 gi|290471526|gb|ADD28945.1| ATP-dependent DNA helicase RecG [Meiothermus ruber DSM 1279]
          Length = 787

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 5/91 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H ++K  E+  ++   + G FD+LV   ++  G+DIP+  ++ I +A++ G  
Sbjct: 605 DVRIDLLHGKMKAEEKDAVMERFKQGAFDLLVSTTVIEVGVDIPQATVMIIENAERFGL- 663

Query: 666 RSKTSLIQTIGRAAR-NVNSKVILYADTITK 695
                L Q  GR  R  + S  +L A   +K
Sbjct: 664 ---AQLHQLRGRVGRGGLESYCVLIAGETSK 691


>gi|256374971|ref|YP_003098631.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
 gi|255919274|gb|ACU34785.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
          Length = 609

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL ++ T  TKR A+ + + + ER   V  +H ++    R + +R  R GK DVLV
Sbjct: 290 ARDRGLSMIFT-RTKRTAQKVADDMAERGFAVAAVHGDLGQGAREQALRAFRSGKIDVLV 348

Query: 638 GINLLREGLDI 648
             ++   G+D+
Sbjct: 349 ATDVAARGIDV 359


>gi|237713244|ref|ZP_04543725.1| ATP-dependent RNA helicase [Bacteroides sp. D1]
 gi|262406616|ref|ZP_06083165.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646166|ref|ZP_06723822.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294807864|ref|ZP_06766646.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229446711|gb|EEO52502.1| ATP-dependent RNA helicase [Bacteroides sp. D1]
 gi|262355319|gb|EEZ04410.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638495|gb|EFF56857.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294444926|gb|EFG13611.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 420

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 9/107 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   +++ + L    + V  MHS+++  +R  ++ + + G+ ++LV  +++ 
Sbjct: 246 RVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRINILVATDIVA 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+DI +  LV   D   D E +       +  IGR AR  N  V L
Sbjct: 306 RGIDIDDIRLVINFDVPHDSEDY-------VHRIGRTARANNDGVAL 345


>gi|213967358|ref|ZP_03395506.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato T1]
 gi|301381676|ref|ZP_07230094.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058434|ref|ZP_07249975.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato K40]
 gi|302131161|ref|ZP_07257151.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213927659|gb|EEB61206.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato T1]
 gi|331019538|gb|EGH99594.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 1150

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 120/307 (39%), Gaps = 55/307 (17%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +   +   
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELEHG----------VLVVPITTALHRLAPTKFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++   + + L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDVGQKLDVNAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPFRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P T + I  VE++++                       L  R   L+
Sbjct: 184 LFDDEIETLRTFDPDTQRSIDKVESVRL-----------------------LPAREFPLQ 220

Query: 412 KEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           KE       R  +R   D       + L +  +   IE Y          E   TLF+Y+
Sbjct: 221 KEEVTRFKARFRERFDVDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYL 275

Query: 466 PEDSLLF 472
           P+D+ +F
Sbjct: 276 PQDTQVF 282


>gi|206889688|ref|YP_002248538.1| ATP-dependent DNA helicase RecG [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741626|gb|ACI20683.1| ATP-dependent DNA helicase RecG [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 690

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H ++   +R EI+++ R G   +LV   ++  G+D+P   L+ I+ A++ G    
Sbjct: 511 KVALIHGKMSAKQREEIMKEFRNGDIHILVATTVIEVGVDVPNATLMIIIHAERFGL--- 567

Query: 668 KTSLIQTIGRAARNVN-SKVILYADTITKSIQL 699
              L Q  GR  R +  SK IL    +T+  +L
Sbjct: 568 -AQLHQLRGRVGRGLRPSKCILLPYKLTEEAKL 599


>gi|254444929|ref|ZP_05058405.1| transcription-repair coupling factor [Verrucomicrobiae bacterium
           DG1235]
 gi|198259237|gb|EDY83545.1| transcription-repair coupling factor [Verrucomicrobiae bacterium
           DG1235]
          Length = 1144

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 89/191 (46%), Gaps = 9/191 (4%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT-DTYIEKESSIN 252
           R   ++A N  LA QL ++   F      +   + + Y+  E  +    D+ +++  + +
Sbjct: 45  RVLTIVAKNSRLAEQLNADLAYFHTQIRGDKTKTRFLYFPEETELSEDEDSPVDRFETGS 104

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSV--SCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++I     +A  S+ + ND +V+ +   +    + +V++ +   + LK G +   ++L+ 
Sbjct: 105 DRI-----AALASIRQSNDQLVLVTTPRALAQAVPAVDALTASQLVLKAGQTHPFEKLVE 159

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            L    Y  + +    G F   G  I+++P    D  +R+  FG++I+ I E  P+T + 
Sbjct: 160 KLKSLDYDNEGLCEAPGQFARRGGLIDVYPIS-ADTPYRIDFFGDEIDAIKELDPVTQRS 218

Query: 371 IRNVETIKIYA 381
               E+I I A
Sbjct: 219 GAPTESIAIDA 229



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +A  L + L E +I V +   + K LE + +  D    K+ VLV   ++  GLDIP C  
Sbjct: 809 VAAKLEKMLPEVSIGVGHGQMDEKKLENVML--DFVNQKYQVLVCTTIIESGLDIPNCNT 866

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR 680
           + I  AD+ G     + L Q  GR  R
Sbjct: 867 IIIEGADRFGL----SQLYQLRGRVGR 889


>gi|3435312|gb|AAC32396.1| RNA helicase-related protein [Homo sapiens]
          Length = 709

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 382 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 441

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           GLDIP    V   D  ++  + + T  I   GRA 
Sbjct: 442 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAG 474


>gi|330967943|gb|EGH68203.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 1150

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 120/307 (39%), Gaps = 55/307 (17%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +   +   
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELEHG----------VLVVPITTALHRLAPTKFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++   + + L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDVGQKLDVNAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPFRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P T + I  VE++++                       L  R   L+
Sbjct: 184 LFDDEIETLRTFDPDTQRSIDKVESVRL-----------------------LPAREFPLQ 220

Query: 412 KEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           KE       R  +R   D       + L +  +   IE Y          E   TLF+Y+
Sbjct: 221 KEEVTRFKARFRERFDVDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYL 275

Query: 466 PEDSLLF 472
           P+D+ +F
Sbjct: 276 PQDTQVF 282


>gi|310642729|ref|YP_003947487.1| ATP-dependent DNA helicase recg [Paenibacillus polymyxa SC2]
 gi|309247679|gb|ADO57246.1| ATP-dependent DNA helicase RecG [Paenibacillus polymyxa SC2]
          Length = 682

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H  +   E+ E++R     +  +LV   ++  G+D+P   L+ I+DAD+ G    
Sbjct: 503 RVGLLHGRMTPAEKEEVMRSFYANEVQLLVSTTVVEVGVDVPNATLMIIMDADRFGL--- 559

Query: 668 KTSLIQTIGRAARNVN-SKVILYAD 691
            + L Q  GR  R  + S  +L AD
Sbjct: 560 -SQLHQLRGRVGRGAHASYCVLIAD 583


>gi|304404155|ref|ZP_07385817.1| ATP-dependent DNA helicase RecG [Paenibacillus curdlanolyticus YK9]
 gi|304347133|gb|EFM12965.1| ATP-dependent DNA helicase RecG [Paenibacillus curdlanolyticus YK9]
          Length = 682

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            ++V  +H  + T E+ E +R     +  VLV   ++  G+D+P   L+ I+DA++ G  
Sbjct: 501 KLKVGLLHGRMTTAEKDEAMRAFGANETQVLVATTVVEVGVDVPNATLIVIIDAERFGL- 559

Query: 666 RSKTSLIQTIGRAARNVN-SKVILYAD 691
              + L Q  GR  R  + S  IL AD
Sbjct: 560 ---SQLHQLRGRVGRGEHQSHCILVAD 583


>gi|295425856|ref|ZP_06818536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064459|gb|EFG55387.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           amylolyticus DSM 11664]
          Length = 456

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++LT++L ++ ++V  +H  +   ER   +R +  G+F  +V  +L   GLDI  
Sbjct: 256 TKQKVDELTKFLQDQGLKVAKIHGGITERERKRTLRQVEQGQFQYVVASDLAARGLDIDG 315

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +       R+   +I  IGR  RN
Sbjct: 316 VSLVINYEVP-----RNLEFVIHRIGRTGRN 341


>gi|295692275|ref|YP_003600885.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
 gi|295030381|emb|CBL49860.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
          Length = 453

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++LT YL ++ ++V  +H  V   ER   +R +  G++  +V  +L   GLDI  
Sbjct: 253 TKQKVDELTNYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQYVVASDLAARGLDIDG 312

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +       R    +I  IGR  RN
Sbjct: 313 VSLVVNYE-----IPRDIEFVIHRIGRTGRN 338


>gi|282892035|ref|ZP_06300512.1| hypothetical protein pah_c205o067 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498077|gb|EFB40419.1| hypothetical protein pah_c205o067 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 746

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           +  LL G+TGSGKT    + IE    MQ+ AI++ P   L AQ    FK+ FP N
Sbjct: 228 QTHLLYGITGSGKTEVYLQAIEKALQMQKSAIMLVPEISLTAQTIERFKSRFPDN 282



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 10/117 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE----GFLRSKTS---LIQTI 675
           +++RD   GK DVL+G  ++ +GL   E  LV +L+ D       F  S+ +   + Q  
Sbjct: 540 KLLRDFGTGKADVLIGTQMIAKGLHFSEVTLVGVLNGDASLNIPDFRSSEIAFQLMTQVA 599

Query: 676 GRAARNVNSKVILYADTI--TKSIQLAIDET-TRRREKQLEHNKKHNINPQSVKEKI 729
           GRA R +    ++    I    +IQLA  +  T   E+++   +  N  P S   K+
Sbjct: 600 GRAGRGITQGKVIIQTHIPDNSTIQLASQQNYTAFFEEEISSRELFNFPPFSSMVKL 656


>gi|281424310|ref|ZP_06255223.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
 gi|281401579|gb|EFB32410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
          Length = 544

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   + +   L  ++I    MHS++    R +++   + G+FDVLV  +++ 
Sbjct: 249 RVIIFCGSKLKVKQVAGALQRKHINCGEMHSDLDQATRDDVMFKFKSGQFDVLVATDIVA 308

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            G+DI +  +V   D   D E +       +  IGR AR
Sbjct: 309 RGIDIDDIAMVINYDVPHDAEDY-------VHRIGRTAR 340


>gi|254884324|ref|ZP_05257034.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837117|gb|EET17426.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 759

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R  +E +Y  +   A  G + ++  ++   A  + EY   R +    + S+   +ER  +
Sbjct: 207 RPGIERLYRSVRQFAS-GKKGMVYAISIEHARRIAEYYSRRGVNAVAVDSKTPAMERKRM 265

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + R GK +VLV +++  EG D P+   V +          S    +Q +GR  R    
Sbjct: 266 VEEFRHGKIEVLVNVDVFSEGFDCPDVEFVQLARPTL-----SLAKYLQQVGRGLRRSEG 320

Query: 685 K 685
           K
Sbjct: 321 K 321


>gi|154503862|ref|ZP_02040922.1| hypothetical protein RUMGNA_01688 [Ruminococcus gnavus ATCC 29149]
 gi|153795461|gb|EDN77881.1| hypothetical protein RUMGNA_01688 [Ruminococcus gnavus ATCC 29149]
          Length = 1121

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 99/233 (42%), Gaps = 24/233 (10%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTG---SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           A +A+  + +  R K + +L + G   S KT  M  + +      IV +  +  A + Y 
Sbjct: 10  AGLAEYQEILQKRRKEKGILQIAGCVNSQKTHLMYALGDGFSYKIIVFSSEE-KAQKAYE 68

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           E++  F  + V Y+             P  D            + + R    RS++ R  
Sbjct: 69  EYR--FLDSGVLYY-------------PARDLLFYHADIKGNYLMKQRMEVIRSMVTRQK 113

Query: 272 ----CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
                ++ +  + + G+   E      +Q+  GD+V+  +L   L    Y R+      G
Sbjct: 114 NQEITVITTMDAFLDGLSPAEEIVSKRIQISSGDTVDFTKLQERLSCLGYAREVQIEGPG 173

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            F V G  ++IFP   E+V  RV ++G++++ I  F   + + I N++ I+IY
Sbjct: 174 QFAVRGGILDIFPL-TEEVPVRVELWGDEVDSIRTFDVESQRSIENLQEIEIY 225



 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V + H ++   E   I+ D   G  DVLV   ++  GLDI     + I DAD+ G L   
Sbjct: 803 VAFAHGQMAEHELENIMYDFINGDIDVLVSTTIIETGLDISNANTMIIHDADRLG-LSQM 861

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSI 697
             L   +GR+ R   + ++   D + K +
Sbjct: 862 YQLRGRVGRSNRMAYAFLLYRRDKLLKEV 890


>gi|104773287|ref|YP_618267.1| putative helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103422368|emb|CAI96888.1| Putative helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 921

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 7/120 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRM--AEDLTEYLYERNIRVRYMHSEVKTLE 620
            A+ +V  +  E++     G R    V   R   A  L E   ++    + + ++     
Sbjct: 393 GAKKRVSYLLKELDYYGYSGTRPCGLVFCSRQEEARQLAEAFTQQGQPAQALTNQDSPAV 452

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R + ++DL  G+   LV ++L  EG+DIP    + +L A +     S T  IQ +GR  R
Sbjct: 453 RRQAVKDLESGRLHYLVTVDLFNEGVDIPALNQIVMLRATQ-----SATVFIQQLGRGLR 507


>gi|193068305|ref|ZP_03049268.1| ATP-dependent RNA helicase SrmB [Escherichia coli E110019]
 gi|192958257|gb|EDV88697.1| ATP-dependent RNA helicase SrmB [Escherichia coli E110019]
          Length = 444

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +VL
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNSYLEGEMVQGKRNEAIKRLTEGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR AR
Sbjct: 303 VATDVAARGIDIPDVSHVFNFD-----MPRSGDTYLHRIGRTAR 341


>gi|331005600|ref|ZP_08328970.1| ATP-dependent DNA helicase RecG [gamma proteobacterium IMCC1989]
 gi|330420573|gb|EGG94869.1| ATP-dependent DNA helicase RecG [gamma proteobacterium IMCC1989]
          Length = 708

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N+ V  +H  +K  E+ +++   + G+ D+LV   ++  G+D+P   L+ I + ++ G  
Sbjct: 532 NLTVGLVHGRLKPPEKEQVMAQFKAGEIDLLVATTVIEVGVDVPNASLMIIENPERLGL- 590

Query: 666 RSKTSLIQTIGRAARN--VNSKVILYADTIT 694
                L Q  GR  R    +  V+LY D ++
Sbjct: 591 ---AQLHQLRGRVGRGSIASHCVLLYGDKVS 618


>gi|237797686|ref|ZP_04586147.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020536|gb|EGI00593.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 1150

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 120/307 (39%), Gaps = 55/307 (17%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +   +   
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELEHG----------VLVVPITTALHRLAPTKFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++   + + L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDVGQKLDVDAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPFRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P T + I  VE++++                       L  R   L+
Sbjct: 184 LFDDEIETLRTFDPDTQRSIDKVESVRL-----------------------LPAREFPLQ 220

Query: 412 KEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           KE       R  +R   D       + L +  +   IE Y          E   TLF+Y+
Sbjct: 221 KEEVTRFKARFRERFDVDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYL 275

Query: 466 PEDSLLF 472
           P+D+ +F
Sbjct: 276 PQDTQVF 282


>gi|212544462|ref|XP_002152385.1| DEAD/DEAH box RNA helicase, putative [Penicillium marneffei ATCC
           18224]
 gi|210065354|gb|EEA19448.1| DEAD/DEAH box RNA helicase, putative [Penicillium marneffei ATCC
           18224]
          Length = 593

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TK  A+ L ++LY R +    +HS+    ER + +   R GK  +L+   +  
Sbjct: 397 RTLIFVNTKAQADRLDDFLYNRGLPSTSIHSDRTQREREDAMSAFRSGKTPILIATGVSS 456

Query: 644 EGLDIPECGLVAILD---ADKEGFLRSKTSLIQTIGRAARNVNSKV 686
            GLDI     V   D   +D+ G        +  IGR AR  N  +
Sbjct: 457 RGLDIKNVMHVINFDLPSSDQGGI----DEYVHRIGRTARIGNEGI 498


>gi|28869305|ref|NP_791924.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852546|gb|AAO55619.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 1150

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 120/307 (39%), Gaps = 55/307 (17%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +   +   
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELEHG----------VLVVPITTALHRLAPTKFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++   + + L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDVGQKLDVNAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPFRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P T + I  VE++++                       L  R   L+
Sbjct: 184 LFDDEIETLRTFDPDTQRSIDKVESVRL-----------------------LPAREFPLQ 220

Query: 412 KEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           KE       R  +R   D       + L +  +   IE Y          E   TLF+Y+
Sbjct: 221 KEEVTRFKARFRERFDVDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYL 275

Query: 466 PEDSLLF 472
           P+D+ +F
Sbjct: 276 PQDTQVF 282


>gi|299140955|ref|ZP_07034093.1| ATP-dependent RNA helicase DeaD [Prevotella oris C735]
 gi|298577921|gb|EFI49789.1| ATP-dependent RNA helicase DeaD [Prevotella oris C735]
          Length = 542

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   + +   L  ++I    MHS++    R +++   + G+FDVLV  +++ 
Sbjct: 247 RVIIFCGSKLKVKQVAGALQRKHINCGEMHSDLDQATRDDVMFKFKSGQFDVLVATDIVA 306

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            G+DI +  +V   D   D E +       +  IGR AR
Sbjct: 307 RGIDIDDIAMVINYDVPHDAEDY-------VHRIGRTAR 338


>gi|283833508|ref|ZP_06353249.1| transcription-repair coupling factor [Citrobacter youngae ATCC
           29220]
 gi|291071173|gb|EFE09282.1| transcription-repair coupling factor [Citrobacter youngae ATCC
           29220]
          Length = 1148

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 125/303 (41%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPAMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L   L    Y+  D  +  G +   G  +++FP   E + +
Sbjct: 130 --------MKKGQRLSRDALREQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE-LPY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  V+ I +     +    PT  TA++  + + +    
Sbjct: 181 RLDFFDDEIDSLRLFDTDTQRTLEEVDAINLLPAHEF----PTDKTAIELFRSQWR-DTF 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E+++     +A+ + Q++        + G+  +   Y + L      EP P LF Y P +
Sbjct: 236 EVKR-----DAEHIYQQV--------SKGTLPAGIEYWQPLFF---SEPLPPLFSYFPAN 279

Query: 469 SLL 471
           +LL
Sbjct: 280 TLL 282


>gi|260558407|ref|ZP_05830603.1| helicase [Enterococcus faecium C68]
 gi|261207113|ref|ZP_05921802.1| helicase [Enterococcus faecium TC 6]
 gi|289567232|ref|ZP_06447617.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
 gi|293556891|ref|ZP_06675452.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
 gi|293567807|ref|ZP_06679148.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
 gi|294615128|ref|ZP_06695014.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
 gi|294617803|ref|ZP_06697416.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
 gi|260075581|gb|EEW63887.1| helicase [Enterococcus faecium C68]
 gi|260078741|gb|EEW66443.1| helicase [Enterococcus faecium TC 6]
 gi|289160980|gb|EFD08895.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
 gi|291589392|gb|EFF21199.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
 gi|291592070|gb|EFF23693.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
 gi|291595943|gb|EFF27223.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
 gi|291600975|gb|EFF31266.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
          Length = 503

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  R   +H ++   +R+ ++R  + G  D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|156358317|ref|XP_001624467.1| predicted protein [Nematostella vectensis]
 gi|156211250|gb|EDO32367.1| predicted protein [Nematostella vectensis]
          Length = 642

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++E++   R+G ++ LV   +  EGLDI +  L+   DA       S   L+Q +GR  
Sbjct: 515 EQLEVVHRFRMGGYNTLVSTCVGEEGLDIGDVDLIVCFDAHA-----SPIRLVQRMGRTG 569

Query: 680 RNVNSKVIL 688
           R  + ++++
Sbjct: 570 RKRDGRIVV 578


>gi|241662507|ref|YP_002980867.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240864534|gb|ACS62195.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
          Length = 627

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I+ T  TKR A+ L E L E       +H ++    R   +  LR G+  VLV  ++   
Sbjct: 300 IVFTA-TKRDADSLAERLTEHGFSAGALHGDMHQGARNRTLTALRRGQLRVLVATDVAAR 358

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           G+D+P+   V   D  K+         +  IGR  R   S + +
Sbjct: 359 GIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGIAI 397


>gi|19115766|ref|NP_594854.1| translation initiation factor eIF4A [Schizosaccharomyces pombe
           972h-]
 gi|1708418|sp|P47943|IF4A_SCHPO RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|1321961|emb|CAA56772.1| translation initiation factor eIF-4A [Schizosaccharomyces pombe]
 gi|2222814|gb|AAB61679.1| cell cycle control protein eIF-4A [Schizosaccharomyces pombe]
 gi|6318257|emb|CAB60237.1| translation initiation factor eIF4A [Schizosaccharomyces pombe]
          Length = 392

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE L ER+  V  MH ++   +R  ++ + R G   +L+  +LL  G+D+ +
Sbjct: 267 TRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQ 326

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 327 VSLVINYDLPANRENYI 343


>gi|17738129|ref|NP_524453.1| Dicer-1 [Drosophila melanogaster]
 gi|51316117|sp|Q9VCU9|DCR1_DROME RecName: Full=Endoribonuclease Dcr-1; Short=Protein dicer-1
 gi|7300916|gb|AAF56056.1| Dicer-1 [Drosophila melanogaster]
          Length = 2249

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 553 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 607

Query: 683 NSKVIL----YADTITKSIQL 699
              VIL    Y      S+QL
Sbjct: 608 AYHVILVAPSYKSPTVGSVQL 628


>gi|325188272|emb|CCA22812.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 470

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE +  ++  V  MH ++   +R  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 345 TRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRVLITTDLLARGIDVQQ 404

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        ++ + I  IGR+ R
Sbjct: 405 VSLVVNYD-----LPLNRENYIHRIGRSGR 429


>gi|257885750|ref|ZP_05665403.1| helicase [Enterococcus faecium 1,231,501]
 gi|257821606|gb|EEV48736.1| helicase [Enterococcus faecium 1,231,501]
          Length = 503

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  R   +H ++   +R+ ++R  + G  D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|209525598|ref|ZP_03274136.1| transcription-repair coupling factor [Arthrospira maxima CS-328]
 gi|209493931|gb|EDZ94248.1| transcription-repair coupling factor [Arthrospira maxima CS-328]
          Length = 1167

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 95/236 (40%), Gaps = 44/236 (18%)

Query: 248 ESSINEQIDRMRHSATRSLLERND------CIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           E S +E++   +      L+ RN        +V +  S    +  V  +    + LK+G 
Sbjct: 91  EPSYSEEMVWGQMQVLADLVARNTGKADPVAVVATERSLQPHLPPVSDFQSYCLTLKLGM 150

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
           + E K +   L +  Y+R  +    G +   GD +++FP   E +  R+  FG+++E I 
Sbjct: 151 TWEGKTIDEKLAQLGYQRVAVVETEGQWSRRGDIVDVFPVASE-LPVRLEWFGDELERIR 209

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
           E  P+T + +  VE + I   +++                                 A  
Sbjct: 210 ELDPVTQRSLDRVEQL-ILTPTNF---------------------------------API 235

Query: 422 LEQRITYDLEMLETTGSCQSIENYS--RYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           +E  ++   E LET  S Q  E  +   +L G      P +L +Y+PE +L  +DE
Sbjct: 236 IEANLSLSTETLETLKSAQISETKTGLSHLLGLA-YHKPASLIDYLPELTLAVIDE 290


>gi|261408394|ref|YP_003244635.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|329929405|ref|ZP_08283153.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
 gi|261284857|gb|ACX66828.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
 gi|328936492|gb|EGG32937.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
          Length = 533

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L +R      +H ++   +R  ++R  R G  DVLV  ++   GLD+  
Sbjct: 249 TKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVATDVAARGLDV-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  +++ D     +   S +  IGR  R
Sbjct: 307 SGVTHVVNFD---LPQDPESYVHRIGRTGR 333


>gi|52078994|ref|YP_077785.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis ATCC 14580]
 gi|52784366|ref|YP_090195.1| YdbR [Bacillus licheniformis ATCC 14580]
 gi|81691189|sp|Q65N62|CSHA_BACLD RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|52002205|gb|AAU22147.1| probable ATP-dependent RNA helicase YdbR [Bacillus licheniformis
           ATCC 14580]
 gi|52346868|gb|AAU39502.1| YdbR [Bacillus licheniformis ATCC 14580]
          Length = 487

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LTE L  R      +H ++   +R+  +R  + G  +VLV  ++   GLDI  
Sbjct: 250 TKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDI-- 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   + + + +     K +  AI++TT+R+
Sbjct: 308 SGVTHVYNFD---VPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRK 363


>gi|315282978|ref|ZP_07871264.1| ATP-dependent DNA helicase RecQ [Listeria marthii FSL S4-120]
 gi|313613375|gb|EFR87233.1| ATP-dependent DNA helicase RecQ [Listeria marthii FSL S4-120]
          Length = 467

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 42/235 (17%)

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           SL  +DE+H  I Q    +R D+     L ++               +E N   P T+V+
Sbjct: 130 SLFVIDEAHC-ISQWGHDFRPDY---LMLGQF--------------IKEANF--PVTMVL 169

Query: 529 SATPGSWE----LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQQ 581
           +AT         L Q Q    EQII      +  +++     Q    E +YD +      
Sbjct: 170 TATATKKVRADILTQLQLTDCEQIIYSVNRPNISLQVEKFSNQQLKKERLYDLVRKLQTP 229

Query: 582 GLRILLTVLTKRMAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           G+   +   +K++AE +   L E   +RV Y H +++  +RI I +    G+ D++   +
Sbjct: 230 GI---IYFSSKKLAESIAHELREMAELRVAYYHGDMEAEDRIVIQQQFVYGQLDIICATS 286

Query: 641 LLREGLDIPECGLVA--ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYAD 691
               G+D  +   V    + AD E +L       Q IGRA R+  +   ++LYA+
Sbjct: 287 AFGMGIDKADIRFVIHYHMPADLEAYL-------QEIGRAGRDGQNSIAILLYAN 334


>gi|313899722|ref|ZP_07833225.1| ATP-dependent RNA helicase DbpA [Clostridium sp. HGF2]
 gi|312955337|gb|EFR37002.1| ATP-dependent RNA helicase DbpA [Clostridium sp. HGF2]
          Length = 477

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+    ++   LY++ I V  +H  +   +R+E ++D RLGK  +L   ++   G+DI +
Sbjct: 248 TQEHVREICRMLYDKGISVDQLHGGMLQEDRLENMKDFRLGKLRILTATDVAARGIDIQD 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +  I++ D       K + I  IGR+AR
Sbjct: 308 --VTHIINYD---MPNKKETYIHRIGRSAR 332


>gi|315042486|ref|XP_003170619.1| ATP-dependent RNA helicase eIF4A [Arthroderma gypseum CBS 118893]
 gi|311344408|gb|EFR03611.1| ATP-dependent RNA helicase eIF4A [Arthroderma gypseum CBS 118893]
          Length = 396

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 271 TRRKVDWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 330

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 331 VSLVINYDLPANRENYI 347


>gi|229578692|ref|YP_002837090.1| type III restriction protein res subunit [Sulfolobus islandicus
           Y.G.57.14]
 gi|228009406|gb|ACP45168.1| type III restriction protein res subunit [Sulfolobus islandicus
           Y.G.57.14]
          Length = 666

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 599 TEYLYERNI----RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           T Y +ER I    +V+ +  +    ER++++++LR G+ DVL+   +  EG+DIPE  L+
Sbjct: 306 TAYEFERAISDLGKVKIITGDSSRYERLKVVQNLRKGEIDVLISTIVGEEGIDIPEAKLL 365

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681
            + D       +S     Q +GR  R 
Sbjct: 366 IMTDVP-----QSALRFYQRLGRLIRG 387


>gi|82703444|ref|YP_413010.1| primosomal protein N' [Nitrosospira multiformis ATCC 25196]
 gi|82411509|gb|ABB75618.1| replication restart DNA helicase PriA [Nitrosospira multiformis
           ATCC 25196]
          Length = 734

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 7/72 (9%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIG 676
           I++D+R  + D+LVG  +L +G D P   LV+IL++D   F        R    L+Q  G
Sbjct: 531 ILKDIREQRVDILVGTQILAKGHDFPNLSLVSILNSDASLFSTDFRASERLFAQLMQVAG 590

Query: 677 RAARNVNSKVIL 688
           RA R+     +L
Sbjct: 591 RAGRSGTPGEVL 602


>gi|259486129|tpe|CBF83723.1| TPA: ATP-dependent RNA helicase eIF4A (EC 3.6.1.-)(Eukaryotic
           initiation factor 4A)(eIF-4A)(Translation initiation
           factor 1) [Source:UniProtKB/Swiss-Prot;Acc:Q5B948]
           [Aspergillus nidulans FGSC A4]
          Length = 398

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 273 TRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 332

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 333 VSLVINYDLPANRENYI 349


>gi|47121785|gb|AAT11555.1| vasa-like protein [Copidosoma floridanum]
 gi|47175561|gb|AAT12450.1| vasa protein [Copidosoma floridanum]
          Length = 708

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 7/116 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           IL+ V  KR A+ +  +L + N     +H +    ER E + D + G+  +LV   +   
Sbjct: 540 ILVFVDQKRTADFIAAFLSDNNFPTTSIHGDRLQREREEALNDFKSGRMCILVATAVAAR 599

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSIQ 698
           GLDI     V   D  KE         I  IGR  R  N    V  Y ++I   IQ
Sbjct: 600 GLDIKNVRFVINFDLPKE-----IDEYIHRIGRTGRVGNKGKAVSFYDESIDNRIQ 650


>gi|315037650|ref|YP_004031218.1| RNA helicase [Lactobacillus amylovorus GRL 1112]
 gi|325956135|ref|YP_004286745.1| RNA helicase [Lactobacillus acidophilus 30SC]
 gi|312275783|gb|ADQ58423.1| putative RNA helicase [Lactobacillus amylovorus GRL 1112]
 gi|325332700|gb|ADZ06608.1| RNA helicase [Lactobacillus acidophilus 30SC]
 gi|327182943|gb|AEA31390.1| RNA helicase [Lactobacillus amylovorus GRL 1118]
          Length = 453

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++LT+YL ++ ++V  +H  V   ER   +R +  G++  +V  +L   GLDI  
Sbjct: 253 TKQTVDELTKYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQYVVASDLAARGLDIDG 312

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +       R    +I  IGR  RN
Sbjct: 313 ISLVINYE-----IPRDIEFVIHRIGRTGRN 338


>gi|269204122|ref|YP_003283391.1| helicase, putative [Staphylococcus aureus subsp. aureus ED98]
 gi|296276645|ref|ZP_06859152.1| helicase, putative [Staphylococcus aureus subsp. aureus MR1]
 gi|262076412|gb|ACY12385.1| helicase, putative [Staphylococcus aureus subsp. aureus ED98]
          Length = 953

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  L+ GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            EG+DIPE   V +L   +   +      IQ +GR  R
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLR 544


>gi|302895469|ref|XP_003046615.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256727542|gb|EEU40902.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 637

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +LTE   +     RY+  +   +ER E +   R  +F VLV   +  EG DIP    + +
Sbjct: 284 ELTERFRKHGFDARYVTGDTPKVERGETLDAFRNSEFPVLVNCGVFTEGTDIPNIDCIIL 343

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR 680
                    RS+  L+Q IGR  R
Sbjct: 344 GRP-----TRSRNLLVQMIGRGMR 362


>gi|212274773|ref|NP_001130659.1| hypothetical protein LOC100191761 [Zea mays]
 gi|194689766|gb|ACF78967.1| unknown [Zea mays]
          Length = 598

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 27/175 (15%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+   S RT + D+   I + A+ G  I+ T  TK+ A++++  L   +I    +H ++ 
Sbjct: 170 PLTTTSKRTVLSDL---ITVYAKGGKTIVFT-RTKKDADEVSLALTN-SIASEALHGDIS 224

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI--LDADKEGFLRSKTSLIQTI 675
             +R   +   R GKF VLV  ++   GLDIP   L+    L  D E F       +   
Sbjct: 225 QHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETF-------VHRS 277

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN---INPQSVKE 727
           GR  R   +   +          L    + +R  K LE +   N   I+P S++E
Sbjct: 278 GRTGRAGKAGTAI----------LMFTSSQKRTVKSLERDVGCNFEFISPPSIEE 322


>gi|171778647|ref|ZP_02919743.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282604|gb|EDT48028.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 533

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD +    D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R   S + I +           I+  T++R 
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLAIIENLTKKRM 362

Query: 710 KQLE 713
           K L+
Sbjct: 363 KGLK 366


>gi|108711872|gb|ABF99667.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
           Japonica Group]
 gi|215686855|dbj|BAG89705.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 597

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 73/144 (50%), Gaps = 14/144 (9%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+   S RT + D+   I + A+ G  I+ T  TKR A++++  L   +I    +H ++ 
Sbjct: 170 PLTSTSKRTVLSDL---ITVYAKGGKTIVFTK-TKRDADEVSLALTN-SIASEALHGDIS 224

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI--LDADKEGFL-RSKTSLIQT 674
             +R   +   R GKF VLV  ++   GLDIP   L+    L  D E F+ RS  +    
Sbjct: 225 QHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT---- 280

Query: 675 IGRAARNVNSKVILYADTITKSIQ 698
            GRA +   + ++++ ++  ++++
Sbjct: 281 -GRAGK-AGTAILMFTNSQRRTVR 302


>gi|41055130|ref|NP_957372.1| eukaryotic initiation factor 4A-III [Danio rerio]
 gi|82209617|sp|Q7ZVA6|IF4A3_DANRE RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|28277876|gb|AAH45939.1| Eukaryotic translation initiation factor 4A, isoform 3 [Danio
           rerio]
 gi|182892106|gb|AAI65833.1| Eif4a3 protein [Danio rerio]
          Length = 406

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 265 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 319

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  L+   D        ++   I  IGR+ R
Sbjct: 320 SGASRVLISTDVWARGLDVSQVSLIINYD-----LPNNRELYIHRIGRSGR 365


>gi|312977884|ref|ZP_07789630.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           crispatus CTV-05]
 gi|310895191|gb|EFQ44259.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           crispatus CTV-05]
          Length = 453

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++LT YL ++ ++V  +H  V   ER   +R +  G++  +V  +L   GLDI  
Sbjct: 253 TKQKVDELTNYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQYVVASDLAARGLDIDG 312

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +       R    +I  IGR  RN
Sbjct: 313 VSLVVNYE-----IPRDIEFVIHRIGRTGRN 338


>gi|256844404|ref|ZP_05549890.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           125-2-CHN]
 gi|256613482|gb|EEU18685.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           125-2-CHN]
          Length = 494

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++    R+ +++  R GK D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 307 SGVTHVYNYD---IPQDPDSYVHRIGRTGR 333


>gi|148539566|ref|NP_001091916.1| eukaryotic initiation factor 4a [Strongylocentrotus purpuratus]
 gi|126722145|emb|CAM57102.1| eukaryotic initiation factor 4a [Strongylocentrotus purpuratus]
          Length = 426

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + L + ++ER+  V  MH ++   ER +I+++ R G   VL+  +LL  G+D+ +
Sbjct: 301 TRRKVDWLCQKMHERDFTVSIMHRDMDQKERDKIMKEFRTGSSRVLICTDLLARGIDVQQ 360

Query: 651 CGLV 654
             LV
Sbjct: 361 VSLV 364


>gi|307202009|gb|EFN81574.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
          Length = 724

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +  ++G ++++ V TK+  +D+T+ +         +H +    ER  ++ + R GK  +L
Sbjct: 350 IGTERGSKMIIFVETKKKVDDITKAIKREGWSAISIHGDKSQPERDYVLSEFRNGKTMIL 409

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLD+ +   V   D     +  S    I  IGR  R
Sbjct: 410 VATDVAARGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGR 448


>gi|289671343|ref|ZP_06492418.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 916

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 10/157 (6%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSE 615
           P+ +  +  Q   VY ++   AQQ    L+ V T+R+AE    +L +     RV   H  
Sbjct: 242 PLSVVMSNDQWLQVYADVAALAQQHRTTLVFVNTRRLAERAARHLGDLLGKQRVAAHHGS 301

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R+   + L+ G   VLV    L  GLDI +  LV  L     G  RS  + +Q  
Sbjct: 302 LSRETRMLAEQRLKAGDLTVLVATASLELGLDIGDVDLVCQL-----GSPRSIATFLQRA 356

Query: 676 GRAARNVNS--KVILYADTITKSIQL-AIDETTRRRE 709
           GR+   V    K  L+  T  + ++  A+ ++ RR E
Sbjct: 357 GRSGHKVGGTPKARLFPQTRDELVECAALLDSIRRGE 393


>gi|227494674|ref|ZP_03924990.1| possible DNA helicase RecG [Actinomyces coleocanis DSM 15436]
 gi|226831856|gb|EEH64239.1| possible DNA helicase RecG [Actinomyces coleocanis DSM 15436]
          Length = 697

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           + I+V  +H ++   E+ +II D   G+  +LV   ++  G+DI +  L+ ILDA + G 
Sbjct: 514 QGIKVGELHGKLTPEEKAQIISDFNTGQLSLLVTTTVIEVGVDIKDASLMVILDAQQFGL 573

Query: 665 LRSKTSLIQTIGRAARN 681
               + L Q  GR  R 
Sbjct: 574 ----SQLHQLRGRVGRG 586


>gi|187927918|ref|YP_001898405.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12J]
 gi|309781089|ref|ZP_07675827.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
 gi|187724808|gb|ACD25973.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
 gi|308920155|gb|EFP65814.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
          Length = 627

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I+ T  TKR A+ L E L E       +H ++    R   +  LR G+  VLV  ++   
Sbjct: 300 IVFTA-TKRDADSLAERLTEHGFSAGALHGDMHQGARNRTLTALRRGQLRVLVATDVAAR 358

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           G+D+P+   V   D  K+         +  IGR  R   S + +
Sbjct: 359 GIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGIAI 397


>gi|92081444|dbj|BAE93269.1| RNA helicase [Tubifex tubifex]
          Length = 402

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +N   QQ  R L+ V  KR A+ +  YL +       +H + +  ER E +RD + G   
Sbjct: 212 LNSQGQQ--RTLVFVEQKRQADFIASYLSQSEFPTTSIHGDREQREREEALRDFKNGTAP 269

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +LV  ++   GLDIP  G+  +++ D     +S    +  IGR  R  N
Sbjct: 270 ILVATSVAARGLDIP--GVNHVINFDMP---QSIDEYVHRIGRTGRCGN 313


>gi|158298823|ref|XP_318978.3| AGAP009863-PA [Anopheles gambiae str. PEST]
 gi|157014071|gb|EAA43551.3| AGAP009863-PA [Anopheles gambiae str. PEST]
          Length = 404

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++      + ++   T+R  + LTE + E+   V  MH +++  +R  I++  R
Sbjct: 263 DLYDTLSIT-----QAVIFCNTRRKVDQLTEQMTEKTFTVSAMHGDMEQRDRDLIMKQFR 317

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  +LL  G+D+ +  LV
Sbjct: 318 TGSSRVLITTDLLARGIDVQQVSLV 342


>gi|118358020|ref|XP_001012258.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89294025|gb|EAR92013.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 744

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           R+++   TK  A    E + + NI+  V+ +H ++   +R    +  R GKF  LV  N+
Sbjct: 328 RVIIFCETKNEA---NEIMLKANIKQDVQVLHGDIPQKQREITFQGFREGKFKCLVATNV 384

Query: 642 LREGLDIPECGLVAILDADKE 662
              GLDIPE  L+  L+  KE
Sbjct: 385 AARGLDIPEVDLIVQLEPPKE 405


>gi|56461091|ref|YP_156372.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
 gi|56180101|gb|AAV82823.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 594

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 8/108 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V T++   D+ E L     +   +  ++   +R + +  LR G  ++LVG +++ 
Sbjct: 249 RALIFVRTRQDTMDVAELLQRNGFKAAPLSGDLNQAQREQTVSQLRSGHIEILVGTDVVA 308

Query: 644 EGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GLD+PE   V   D  +D E ++      I   GRA R    + IL+
Sbjct: 309 RGLDVPEITHVINYDLPSDTESYVHR----IGRTGRAGR--TGEAILF 350


>gi|69248308|ref|ZP_00604710.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257878842|ref|ZP_05658495.1| helicase [Enterococcus faecium 1,230,933]
 gi|257881478|ref|ZP_05661131.1| helicase [Enterococcus faecium 1,231,502]
 gi|257890700|ref|ZP_05670353.1| helicase [Enterococcus faecium 1,231,410]
 gi|258615088|ref|ZP_05712858.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium DO]
 gi|293560261|ref|ZP_06676758.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
 gi|294621795|ref|ZP_06700954.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
 gi|314938932|ref|ZP_07846197.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|314943517|ref|ZP_07850284.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|314948188|ref|ZP_07851582.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
 gi|314951548|ref|ZP_07854594.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|314991589|ref|ZP_07857065.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|314994922|ref|ZP_07860049.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|68194452|gb|EAN08953.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257813070|gb|EEV41828.1| helicase [Enterococcus faecium 1,230,933]
 gi|257817136|gb|EEV44464.1| helicase [Enterococcus faecium 1,231,502]
 gi|257827060|gb|EEV53686.1| helicase [Enterococcus faecium 1,231,410]
 gi|291598627|gb|EFF29685.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
 gi|291605711|gb|EFF35148.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
 gi|313590904|gb|EFR69749.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|313593873|gb|EFR72718.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|313596242|gb|EFR75087.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|313597889|gb|EFR76734.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|313641641|gb|EFS06221.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|313645321|gb|EFS09901.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
          Length = 503

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  R   +H ++   +R+ ++R  + G  D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|327292761|ref|XP_003231078.1| ATP-dependent RNA helicase eIF4A [Trichophyton rubrum CBS 118892]
 gi|326466708|gb|EGD92161.1| ATP-dependent RNA helicase eIF4A [Trichophyton rubrum CBS 118892]
          Length = 396

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 271 TRRKVDWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 330

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 331 VSLVINYDLPANRENYI 347


>gi|325684691|gb|EGD26845.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 1158

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 65/324 (20%), Positives = 124/324 (38%), Gaps = 39/324 (12%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           SR K  LL GV        +   +  + +P +++  N+  A + Y++       + +E F
Sbjct: 21  SRIKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERYNDLSRLLADDDLELF 80

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
               +          T T +     ++ +I          L  R   ++ +     Y + 
Sbjct: 81  ALDGNL--------ATQTAVSSPDELSSRI----QCLNLLLSGRPGVVIATPQGLQYPLS 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +   + +      +GD +   +L   L +  Y R+++ +  G F + GD ++++P   E 
Sbjct: 129 APALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRES 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRN--VETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
              R+  FG++I+ I  F  LT Q+      E I   A+ H  T                
Sbjct: 189 -PLRLEFFGDEIDTIKTF-DLTSQRSLEELPEAIVPAASDHVFTAE-------------- 232

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEML-ETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
                +L++ GR L A  L +     LE+  E   + Q  ++  RYL    P     +L 
Sbjct: 233 -----DLDRAGREL-AGDLPKEAAASLEIAQEAFANGQLPDDCDRYLDYLLP--ESFSLL 284

Query: 463 EYIPEDSLLFVDESHVTIPQISGM 486
           +Y+P   LL  ++  +    +  M
Sbjct: 285 DYLPAKGLLLFNDWQLIAESVKNM 308


>gi|321399813|emb|CAJ08508.2| putative ATP-dependent RNA helicase [Leishmania major strain
           Friedlin]
          Length = 615

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   QG R+L+ V  KR A+ L  YL +  I    +H +    ER E +   + G   VL
Sbjct: 384 LKEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCRVL 443

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLDIP   +V   D        +    +  IGR  R
Sbjct: 444 VATDVASRGLDIPNVAVVVQYD-----LPSNIDDYVHRIGRTGR 482


>gi|308159786|gb|EFO62305.1| ATP-dependent RNA helicase [Giardia lamblia P15]
          Length = 554

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+H+ +   +R EI+   R     +LV  ++L  GLD P  GLV   D   +      T 
Sbjct: 375 YLHAGLTKSQRHEIVTKFRTADLWILVCTDVLARGLDFPRIGLVINFDIPSD-----LTH 429

Query: 671 LIQTIGRAARNV-NSKVILYAD---TITKSIQLAIDET 704
            I  IGRA R    + V L+ +   ++ +S+  A+ ++
Sbjct: 430 YIHRIGRAGRQTEGTAVTLFTERDASLVRSLATAVRDS 467


>gi|302854754|ref|XP_002958882.1| DEAD/DEAH box helicase [Volvox carteri f. nagariensis]
 gi|300255784|gb|EFJ40070.1| DEAD/DEAH box helicase [Volvox carteri f. nagariensis]
          Length = 347

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           +G+V   VE+ S   ++  + + +   A  G  ++ T    R AE++  YL  R I V  
Sbjct: 181 SGVVRQHVELVSDEQKLGRLLELLAPGAAGGPAVVFTRSLTR-AEEVARYLSGRGISVAM 239

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           +HS++   +R E ++  R G   VLV   L   GL+ P+  LV
Sbjct: 240 LHSDLTQAQRDEAMQCFRFGVTSVLVATALASRGLNFPDVDLV 282


>gi|295097891|emb|CBK86981.1| Superfamily II DNA and RNA helicases [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 442

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  ++  R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +VL
Sbjct: 243 LKQEEATRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMAQVKRTEGIKRLTDGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR  R
Sbjct: 303 VATDVAARGIDIPDVSHVINFD-----MPRSGDTYLHRIGRTGR 341


>gi|295692132|ref|YP_003600742.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
 gi|295030238|emb|CBL49717.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
          Length = 494

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++    R+ +++  R GK D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 307 SGVTHVYNYD---IPQDPDSYVHRIGRTGR 333


>gi|259231914|gb|ACW20130.1| vasa protein [Strongylocentrotus nudus]
          Length = 104

 Score = 43.1 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 35/66 (53%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TKR A+ L   L +       +H + +  ER E +RD + GK  +LV  ++  
Sbjct: 5   RTLVFVATKRNADFLASLLSQSEFPTTSIHGDRQQQEREEALRDFKTGKAPILVATSVAA 64

Query: 644 EGLDIP 649
            GLDIP
Sbjct: 65  RGLDIP 70


>gi|258446412|ref|ZP_05694567.1| type III restriction protein res subunit [Staphylococcus aureus
           A6300]
 gi|257854480|gb|EEV77428.1| type III restriction protein res subunit [Staphylococcus aureus
           A6300]
          Length = 953

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  L+ GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            EG+DIPE   V +L   +   +      IQ +GR  R
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLR 544


>gi|171687943|ref|XP_001908912.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943933|emb|CAP69585.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1064

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 5/73 (6%)

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  ++IE I   + G+++VLV  ++  EGLDI +  L+   DA       S   ++Q +
Sbjct: 569 MKQKQQIETIEKFKNGQYNVLVATSIGEEGLDIGQVDLIVCYDASS-----SPIRMLQRM 623

Query: 676 GRAARNVNSKVIL 688
           GR  R    K++L
Sbjct: 624 GRTGRKRAGKIVL 636


>gi|167036344|ref|YP_001671575.1| ATP-dependent DNA helicase RecG [Pseudomonas putida GB-1]
 gi|166862832|gb|ABZ01240.1| ATP-dependent DNA helicase RecG [Pseudomonas putida GB-1]
          Length = 692

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L   L E  +RV  +H  +K  E+ EI+   + G+  +LV   ++  G+D+P   L+ 
Sbjct: 508 EELGSALGE--LRVGLIHGRMKPAEKAEIMAQFKAGELQLLVATTVIEVGVDVPNASLMI 565

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 566 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 603


>gi|157873697|ref|XP_001685353.1| ATP-dependent RNA helicase [Leishmania major strain Friedlin]
          Length = 614

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   QG R+L+ V  KR A+ L  YL +  I    +H +    ER E +   + G   VL
Sbjct: 384 LKEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCRVL 443

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLDIP   +V   D        +    +  IGR  R
Sbjct: 444 VATDVASRGLDIPNVAVVVQYD-----LPSNIDDYVHRIGRTGR 482


>gi|50554453|ref|XP_504635.1| YALI0E31427p [Yarrowia lipolytica]
 gi|74633162|sp|Q6C3X7|DBP5_YARLI RecName: Full=ATP-dependent RNA helicase DBP5
 gi|49650504|emb|CAG80239.1| YALI0E31427p [Yarrowia lipolytica]
          Length = 488

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 8/115 (6%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +E++Y  + +A+      ++ V  +  A  L + + +   +V  +HS++   ER  ++ D
Sbjct: 327 LEELYSMLTIASS-----VIFVAQRSTANALYQRMSKNGHKVSLLHSDLSVDERDRLMDD 381

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            R G+  VL+  N++  G+DI    +V   D   DK G    +T L   IGR  R
Sbjct: 382 FRFGRSKVLISTNVIARGIDIATVSMVVNYDLPTDKNGKPDPETYL-HRIGRTGR 435


>gi|329941162|ref|ZP_08290441.1| transcriptional-repair coupling factor [Streptomyces
           griseoaurantiacus M045]
 gi|329299693|gb|EGG43592.1| transcriptional-repair coupling factor [Streptomyces
           griseoaurantiacus M045]
          Length = 1176

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 92/215 (42%), Gaps = 22/215 (10%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           + + F +A +     RP + +      A  L +  +   P   V  + S+ +    E   
Sbjct: 38  AARPFAVAALARGTGRPVLAVTATGREAEDLAAALRTLLPPQGVVEYPSW-ETLPHERLS 96

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQM 293
           PR+DT   + + +     R+ H            +VV+ V  +      G+G +     +
Sbjct: 97  PRSDTVGRRLAVLR----RLAHPRADDPETGPVSVVVAPVRSVLQPQVKGLGDL-----V 147

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            V L+ G++ +   ++++L    Y R ++   RG F V G  +++FP   E+   RV  +
Sbjct: 148 PVALRSGETADLGAVVAALSAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRVEFW 206

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           G+D+EEI  F      K+ +  ++++  +  +  P
Sbjct: 207 GDDVEEIRYF------KVADQRSLEVAEHGLWAPP 235


>gi|326693689|ref|ZP_08230694.1| ATP-dependent DNA helicase RecG [Leuconostoc argentinum KCTC 3773]
          Length = 676

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 9/107 (8%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           T + + M  +L EY       +  +H  +   E+ +++ D +  +  VLV   ++  G+D
Sbjct: 484 TAMYEAMQLELPEY------TIGLLHGRLSNDEKKQLMADFKANRIQVLVATTVIEVGVD 537

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +P   ++ ILDAD+ G L     L   +GR +R   S  +L AD  T
Sbjct: 538 VPNASIMLILDADRFG-LAQLHQLRGRVGRGSR--QSYTLLIADPKT 581


>gi|325283382|ref|YP_004255923.1| DEAD/DEAH box helicase domain-containing protein [Deinococcus
           proteolyticus MRP]
 gi|324315191|gb|ADY26306.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
           MRP]
          Length = 612

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 9/104 (8%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R      +H ++   +R   +   R G+  +LV  ++   GLDIPE
Sbjct: 249 TKRETDELALELIHRGFEAEALHGDLAQNQRERALGSFRSGRTSILVATDVAARGLDIPE 308

Query: 651 CGLVAI--LDADKEGFL-RSKTSLIQTIGRAARNVNSKVILYAD 691
             LV    L  D E ++ RS  +     GRA R   + +I+Y D
Sbjct: 309 VDLVVQYHLPQDPESYVHRSGRT-----GRAGR-AGTAIIMYGD 346


>gi|320163650|gb|EFW40549.1| eukaryotic translation initiation factor 4A isoform 1B [Capsaspora
           owczarzaki ATCC 30864]
          Length = 419

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y+ +N+      + ++   T+R  + LTE ++ ++  V  +H ++   ER  I+R+ R
Sbjct: 278 DLYETLNVT-----QAVIFTNTRRKVDWLTEKMHAKDFTVSALHGDMDQKERDVIMREFR 332

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  +LL  G+D+ +  LV
Sbjct: 333 SGSSRVLITTDLLARGIDVQQVSLV 357


>gi|254776598|ref|ZP_05218114.1| RhlE [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 505

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ + + L ER  +V  +H ++  + R + ++  R G  DVLV  ++   G+DI
Sbjct: 271 TKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKAFRTGDIDVLVATDVAARGIDI 328


>gi|242046786|ref|XP_002461139.1| hypothetical protein SORBIDRAFT_02g041390 [Sorghum bicolor]
 gi|241924516|gb|EER97660.1| hypothetical protein SORBIDRAFT_02g041390 [Sorghum bicolor]
          Length = 546

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L + L   ++RV  +H+++   +R + + +LR GK  VL+   ++  
Sbjct: 394 VLIFVQSKERAKELYKELAFDDVRVDAIHADLNEQQRQDAVDNLRAGKTWVLIATEVIAR 453

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G+  +++ D   F  S  + I  IGR  R
Sbjct: 454 GMDFK--GVNCVINYD---FPESAAAYIHRIGRCGR 484


>gi|240112222|ref|ZP_04726712.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae MS11]
 gi|268598281|ref|ZP_06132448.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae MS11]
 gi|293397684|ref|ZP_06641890.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae F62]
 gi|268582412|gb|EEZ47088.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae MS11]
 gi|291611630|gb|EFF40699.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae F62]
          Length = 680

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++ +   G+ +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPEPNIGL--VHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|224096586|ref|XP_002310663.1| predicted protein [Populus trichocarpa]
 gi|222853566|gb|EEE91113.1| predicted protein [Populus trichocarpa]
          Length = 407

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LT  + E N  V  MH ++   ER  I+ + R
Sbjct: 266 DLYDTLTIT-----QAVIFCNTKRKVDWLTAKMVEFNFTVSAMHGDMPQRERDAIMSNFR 320

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LG+  VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 321 LGETRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 366


>gi|212638043|ref|YP_002314563.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
 gi|212559523|gb|ACJ32578.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
          Length = 471

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L  R      +H ++   +R+ ++R  + G  D+LV  ++   GLDI  
Sbjct: 252 TKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIDILVATDVAARGLDI-- 309

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-AIDETTRRRE 709
            G+  + + D     +   S +  IGR  R   + + +   T  +  QL  I++TT+R+ 
Sbjct: 310 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKTGMAITFVTPREIGQLHHIEKTTKRKM 366

Query: 710 KQLE 713
           ++++
Sbjct: 367 ERMK 370


>gi|71905675|ref|YP_283262.1| replication restart DNA helicase PriA [Dechloromonas aromatica RCB]
 gi|71845296|gb|AAZ44792.1| replication restart DNA helicase PriA [Dechloromonas aromatica RCB]
          Length = 666

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD-LRLGKFDVLVGINLLREGLDIP 649
           T+R+   L E   E  + +R     VK+ ++ E++ D +  G+ D+LVG  +L +G D P
Sbjct: 427 TQRLEGWLQEAFPEARV-LRVDRDSVKSRKQWEVMLDRIHGGEADILVGTQMLAKGHDFP 485

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           +  LV +L AD   F        R    L+Q  GRA R
Sbjct: 486 KLTLVGVLGADSALFAADWRAPERLFAQLMQVAGRAGR 523


>gi|327399690|ref|YP_004340559.1| DEAD/DEAH box helicase domain-containing protein [Hippea maritima
           DSM 10411]
 gi|327182319|gb|AEA34500.1| DEAD/DEAH box helicase domain protein [Hippea maritima DSM 10411]
          Length = 716

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 11/112 (9%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           ++ E+L +  + +  RV  +H ++K  E+  I++D + G  D L+   ++  G+D P   
Sbjct: 525 KLHEELKDGFF-KGFRVELLHGKLKPEEKDAILKDFKEGAIDCLISTTVIEVGIDSPLAT 583

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVIL-----YADTITKSIQ 698
           ++ I +AD+ G     + L Q  GR  R + +S  IL      +DT  K I+
Sbjct: 584 VIIIENADRFGL----SQLHQLRGRVGRSSFDSYAILITNNNLSDTAKKRIE 631


>gi|302327262|gb|ADL26463.1| ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 739

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK+   ++ E L  R   V  ++ ++    R   I  L++GK D++V  ++   
Sbjct: 303 VLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVATDVAAR 362

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           G+D+    LV   D   D E ++      I   GRA R+ N+  IL+     K +   I+
Sbjct: 363 GIDVDRISLVVNYDIPYDTESYVHR----IGRTGRAGRSGNA--ILFITPREKRMLKTIE 416

Query: 703 ETTRR 707
           + TR+
Sbjct: 417 KATRQ 421


>gi|289617636|emb|CBI61359.1| unnamed protein product [Sordaria macrospora]
          Length = 317

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R
Sbjct: 175 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFR 229

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 230 QGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 275


>gi|258439557|ref|ZP_05690303.1| type III restriction protein res subunit [Staphylococcus aureus
           A9299]
 gi|257847333|gb|EEV71335.1| type III restriction protein res subunit [Staphylococcus aureus
           A9299]
          Length = 953

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  L+ GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            EG+DIPE   V +L   +   +      IQ +GR  R
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLR 544


>gi|257459507|ref|ZP_05624616.1| ATP-dependent DNA helicase RecG [Campylobacter gracilis RM3268]
 gi|257442932|gb|EEV18066.1| ATP-dependent DNA helicase RecG [Campylobacter gracilis RM3268]
          Length = 986

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSR-EKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           +DI+ +     + P+ DQ +AI  +   + S   + ++++G  GSGKT  +     AM  
Sbjct: 596 RDISDWLASLPFEPTRDQLSAIKDIASDLQSPLARRRVVMGDVGSGKTLVILAS-AAMNY 654

Query: 195 PAI--VMAPNKILAAQLYSEFKNFFP 218
           P I  +MAP  ILA Q+Y+E +   P
Sbjct: 655 PRISYLMAPTSILAEQIYAEARRLLP 680


>gi|251812202|ref|ZP_04826675.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
 gi|251804299|gb|EES56956.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
          Length = 528

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 4/122 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+LV  ++   GLDI  
Sbjct: 268 TKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 325

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
            G+  + + D      S T  I   GRA +      + + + I       I++   RR K
Sbjct: 326 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK--EGIAVTFVNPIEMDYIRQIEDVNNRRMK 383

Query: 711 QL 712
            L
Sbjct: 384 AL 385


>gi|240013433|ref|ZP_04720346.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae DGI18]
 gi|240120504|ref|ZP_04733466.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID24-1]
          Length = 680

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++ +   G+ +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPEPNIGL--VHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|281422527|ref|ZP_06253526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
 gi|281403351|gb|EFB34031.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
          Length = 568

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 15/127 (11%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           T ++D++   +L      R+++   +K   + L   L +  +    MHS+++  ER +++
Sbjct: 234 TIIKDIFKAGDLK-----RVIVFSGSKFKVKQLAASLQQIGVNCGAMHSDLEQAERDDVM 288

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR-NV 682
              + G++DVLV  +++  G+DI +  +V   D   D E +       +  IGR AR N 
Sbjct: 289 FKFKSGQYDVLVATDIVARGIDIDDIEMVINYDVPHDTEDY-------VHRIGRTARANR 341

Query: 683 NSKVILY 689
           + + I +
Sbjct: 342 DGRAITF 348


>gi|237807374|ref|YP_002891814.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237499635|gb|ACQ92228.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 642

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 11/155 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK  AE+LT  L  R      +H ++    R   +  L+ G+ D+L+  ++   
Sbjct: 250 LLVFVRTKTAAEELTSKLSARGHSCEALHGDIPQKLRERTVEKLKAGQIDILIATDVAAR 309

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  ++  IL+     + +   I+
Sbjct: 310 GLDVERITHVVNYDIPYDTESYVHR----IGRTGRAGRTGDA--ILFVAPRERRMLRMIE 363

Query: 703 ETTRRREKQLEHNKKHNINPQSV---KEKIMEVID 734
           + TR+  + ++     +IN   +   K +I E +D
Sbjct: 364 QATRQPIEPMQMPTAKDINKHRLERFKLQIRETLD 398


>gi|145517226|ref|XP_001444496.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124411918|emb|CAK77099.1| unnamed protein product [Paramecium tetraurelia]
          Length = 434

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           +L   +K+  +DL + L      V  +HS+++  ER +++++ + G   +LV  +L+  G
Sbjct: 300 ILFCNSKKTVDDLYDKLTAEGFTVSKIHSQMEQKEREQVMQEFKKGAARILVSTDLMGRG 359

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +D+ +  LV   +     F R K   I  +GRA R
Sbjct: 360 IDVQQLSLVINYE-----FPRLKEQYIHRVGRAGR 389


>gi|147904603|ref|NP_001080569.1| ATP-dependent RNA helicase DDX42 [Xenopus laevis]
 gi|82209788|sp|Q7ZY47|DDX42_XENLA RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|27696431|gb|AAH43977.1| Ddx42-prov protein [Xenopus laevis]
          Length = 947

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V  K  AE+L   L + +  +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 498 VLVFVTKKANAEELAANLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVLVATDVAAR 557

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y    +K    A D
Sbjct: 558 GLDIPSIKTVVNYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTSKESNFAGD 609


>gi|324997533|ref|ZP_08118645.1| transcription-repair coupling factor [Pseudonocardia sp. P1]
          Length = 1211

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           V L +G+  E ++LL  LV+  Y R ++   RG F V G  +++FP   E    RV  +G
Sbjct: 163 VSLAVGEEHEFEQLLERLVELAYTRAEMVTTRGEFAVRGGILDVFPPTAEHPV-RVEFWG 221

Query: 355 NDIEEISEF 363
           +++ E+  F
Sbjct: 222 DEVSEMRAF 230


>gi|322788219|gb|EFZ14001.1| hypothetical protein SINV_14366 [Solenopsis invicta]
          Length = 423

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 282 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFR 336

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 337 SGQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 382


>gi|317179704|dbj|BAJ57492.1| DNA recombinase [Helicobacter pylori F30]
          Length = 621

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFT-MAKVIE 190
           N+S+ +  F     +  + DQ  AI ++   + S    + L++G  G GKT   +A ++ 
Sbjct: 216 NNSERLKAFIASLPFQLTNDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVL 275

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           A     ++MAP  ILA QLY+E   F P
Sbjct: 276 AYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|298711900|emb|CBJ48587.1| dicer-like 3 [Ectocarpus siliculosus]
          Length = 1557

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           + I   R G+  +LV  +   EG+D+PEC LV  +D      +++  SLI T GRA    
Sbjct: 440 QTINMFRAGEVQILVTTDACSEGIDVPECNLVVSMDK-----IKTSRSLIHTRGRARSKG 494

Query: 683 NSKVILYADTIT---KSIQLAIDETTRRREKQLEHNK 716
              VI+  D        + L + E+   +  QL H K
Sbjct: 495 GKFVIMVEDGDDMERDRVSLMLMESEDIKRFQLGHEK 531


>gi|265750963|ref|ZP_06087026.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263237859|gb|EEZ23309.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 751

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R  +E +Y  +   A  G + ++  ++   A  + EY   R +    + S+   +ER  +
Sbjct: 199 RPGIERLYRSVRQFAS-GKKGMVYAISIEHARRIAEYYSRRGVNAVAVDSKTPAMERKRM 257

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + R GK +VLV +++  EG D P+   V +          S    +Q +GR  R    
Sbjct: 258 VEEFRHGKIEVLVNVDVFSEGFDCPDVEFVQLARPTL-----SLAKYLQQVGRGLRRSEG 312

Query: 685 K 685
           K
Sbjct: 313 K 313


>gi|228474931|ref|ZP_04059660.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
 gi|314935968|ref|ZP_07843318.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
 gi|228271163|gb|EEK12543.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
 gi|313655974|gb|EFS19716.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
          Length = 503

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 4/122 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALLTKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
            G+  + + D      S T  I   GRA +      + + + I       I+E   RR K
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK--EGIAVTFVNPIEMDYIRQIEEVNDRRMK 364

Query: 711 QL 712
            L
Sbjct: 365 AL 366


>gi|227894493|ref|ZP_04012298.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus ultunensis
           DSM 16047]
 gi|227863652|gb|EEJ71073.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus ultunensis
           DSM 16047]
          Length = 496

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++    R+ +++  R GK D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTRGLQARGYNAAGIHGDLSQARRMTVLKRFREGKLDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 307 SGVTHVYNYD---IPQDPDSYVHRIGRTGR 333


>gi|148268925|ref|YP_001247868.1| type III restriction enzyme, res subunit [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150395002|ref|YP_001317677.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus JH1]
 gi|253315915|ref|ZP_04839128.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|257794827|ref|ZP_05643806.1| type III restriction protein res subunit [Staphylococcus aureus
           A9781]
 gi|258407507|ref|ZP_05680650.1| type III restriction protein res subunit [Staphylococcus aureus
           A9763]
 gi|258422164|ref|ZP_05685076.1| type III restriction protein res subunit [Staphylococcus aureus
           A9719]
 gi|258442887|ref|ZP_05691447.1| type III restriction protein res subunit [Staphylococcus aureus
           A8115]
 gi|258450471|ref|ZP_05698563.1| type III restriction protein res subunit [Staphylococcus aureus
           A6224]
 gi|258455152|ref|ZP_05703112.1| type III restriction protein res subunit [Staphylococcus aureus
           A5937]
 gi|282893943|ref|ZP_06302175.1| type III restriction enzyme, res subunit [Staphylococcus aureus
           A8117]
 gi|282926982|ref|ZP_06334607.1| type III restriction enzyme, res subunit [Staphylococcus aureus
           A10102]
 gi|295405184|ref|ZP_06814997.1| type III restriction enzyme [Staphylococcus aureus A8819]
 gi|297244240|ref|ZP_06928130.1| type III restriction enzyme [Staphylococcus aureus A8796]
 gi|147741994|gb|ABQ50292.1| type III restriction enzyme, res subunit [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149947454|gb|ABR53390.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus JH1]
 gi|257788799|gb|EEV27139.1| type III restriction protein res subunit [Staphylococcus aureus
           A9781]
 gi|257841019|gb|EEV65470.1| type III restriction protein res subunit [Staphylococcus aureus
           A9763]
 gi|257841595|gb|EEV66032.1| type III restriction protein res subunit [Staphylococcus aureus
           A9719]
 gi|257852008|gb|EEV75942.1| type III restriction protein res subunit [Staphylococcus aureus
           A8115]
 gi|257856563|gb|EEV79472.1| type III restriction protein res subunit [Staphylococcus aureus
           A6224]
 gi|257862363|gb|EEV85131.1| type III restriction protein res subunit [Staphylococcus aureus
           A5937]
 gi|282591029|gb|EFB96103.1| type III restriction enzyme, res subunit [Staphylococcus aureus
           A10102]
 gi|282764001|gb|EFC04129.1| type III restriction enzyme, res subunit [Staphylococcus aureus
           A8117]
 gi|285818149|gb|ADC38636.1| DNA/RNA helicase of DEAD/DEAH box family [Staphylococcus aureus
           04-02981]
 gi|294970129|gb|EFG46147.1| type III restriction enzyme [Staphylococcus aureus A8819]
 gi|297179018|gb|EFH38263.1| type III restriction enzyme [Staphylococcus aureus A8796]
 gi|312830832|emb|CBX35674.1| type III restriction enzyme, res subunit [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315130864|gb|EFT86849.1| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|329723769|gb|EGG60298.1| helicase C-terminal domain protein [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 953

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L+ L+ V +K+ A DL + L  + I+   +  +     R  +I  L+ GK + ++ ++L 
Sbjct: 452 LQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLF 511

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            EG+DIPE   V +L   +   +      IQ +GR  R
Sbjct: 512 NEGIDIPEVNQVVMLRPTESSII-----FIQQLGRGLR 544


>gi|41409410|ref|NP_962246.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41398241|gb|AAS05862.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 505

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ + + L ER  +V  +H ++  + R + ++  R G  DVLV  ++   G+DI
Sbjct: 271 TKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKAFRTGDIDVLVATDVAARGIDI 328


>gi|326475356|gb|EGD99365.1| eukaryotic translation initiation factor 4 [Trichophyton tonsurans
           CBS 112818]
 gi|326482351|gb|EGE06361.1| eukaryotic initiation factor 4A [Trichophyton equinum CBS 127.97]
          Length = 396

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 271 TRRKVDWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 330

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 331 VSLVINYDLPANRENYI 347


>gi|322794838|gb|EFZ17785.1| hypothetical protein SINV_13785 [Solenopsis invicta]
          Length = 586

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L EYL      V  +H +    ER + +R  R GK  +LV   +   G
Sbjct: 436 LVFVETKKGADMLEEYLASMGYPVTSIHGDRTQREREDALRRFRAGKAPILVATAVAARG 495

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D   D E ++    +T  +  +G A    N K
Sbjct: 496 LDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNLGLATSFFNHK 539


>gi|298492421|ref|YP_003722598.1| primosomal protein N' ['Nostoc azollae' 0708]
 gi|298234339|gb|ADI65475.1| primosomal protein N' ['Nostoc azollae' 0708]
          Length = 848

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 20/174 (11%)

Query: 591 TKRMAEDLT-EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+R+A++L  ++ + R IR     +  K   R  ++     G+ D+LVG  +L +GLD+P
Sbjct: 614 TQRVAQELNKQFPHLRLIRFDRDTTRNKGAHR-NLLTQFANGEADLLVGTQMLSKGLDLP 672

Query: 650 ECGLVAILDADKEGFL---------RSKTSLIQTIGRAARNVN-SKVILYADTITKSIQL 699
           +  LV ++ AD  G L         R+  +L Q  GRA R  +  +VI+   T    +  
Sbjct: 673 QVTLVGVVAAD--GLLHLSDYRASERAFQTLTQVAGRAGRGEDPGRVIVQTYTPEHPVIE 730

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKI---MEVIDPILLEDAA---TTNIS 747
           A+     +     E  ++  +N   +   I   +  +DPI +++ A    TN S
Sbjct: 731 AVKTHDYQSFCDAELAQRQALNYPPMGRLILLRLSSVDPIQVQNTAQIIATNFS 784


>gi|240127511|ref|ZP_04740172.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-93-1035]
 gi|268685886|ref|ZP_06152748.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-93-1035]
 gi|268626170|gb|EEZ58570.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae SK-93-1035]
          Length = 680

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++ +   G+ +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPEPNIGL--VHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|237710161|ref|ZP_04540642.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229455623|gb|EEO61344.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 751

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R  +E +Y  +   A  G + ++  ++   A  + EY   R +    + S+   +ER  +
Sbjct: 199 RPGIERLYRSVRQFAS-GKKGMVYAISIEHARRIAEYYSRRGVNAVAVDSKTPAMERKRM 257

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + R GK +VLV +++  EG D P+   V +          S    +Q +GR  R    
Sbjct: 258 VEEFRHGKIEVLVNVDVFSEGFDCPDVEFVQLARPTL-----SLAKYLQQVGRGLRRSEG 312

Query: 685 K 685
           K
Sbjct: 313 K 313


>gi|255543078|ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223548563|gb|EEF50054.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 772

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 11/129 (8%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + A+ G  I+ T  TKR A++++  L   +I    +H ++   +R   +   R GK
Sbjct: 359 DLVTVYAKGGKTIIFT-QTKRDADEVSMVLTN-SIASEALHGDISQHQRERTLNGFRQGK 416

Query: 633 FDVLVGINLLREGLDIPECGLVAI--LDADKEGFL-RSKTSLIQTIGRAARNVNSKVILY 689
           F VLV  ++   GLDIP   LV    L  D E F+ RS  +     GRA +   + V+++
Sbjct: 417 FTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRT-----GRAGKE-GTAVLMF 470

Query: 690 ADTITKSIQ 698
             +  ++++
Sbjct: 471 TSSQRRTVK 479


>gi|184200206|ref|YP_001854413.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
           DC2201]
 gi|183580436|dbj|BAG28907.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
           DC2201]
          Length = 719

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 9/152 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E++ + L  R      ++ ++    R   +  LR GK D+LV  ++   
Sbjct: 324 VIVFVRTKAATEEIADKLKARGYTAAAINGDIPQNLRERTVDSLREGKIDILVATDVAAR 383

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+    LV   D   D E ++      I   GRA R    + IL+     K +  AI+
Sbjct: 384 GLDVERISLVVNYDIPHDTESYVHR----IGRTGRAGR--KGEAILFMTPREKYLLRAIE 437

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           + TR+  +Q+       +N Q+ K+   + I+
Sbjct: 438 KATRQPVEQMRVPTTDEVN-QTRKDNFAQQIE 468


>gi|294775777|ref|ZP_06741279.1| type III restriction enzyme, res subunit [Bacteroides vulgatus
           PC510]
 gi|294450363|gb|EFG18861.1| type III restriction enzyme, res subunit [Bacteroides vulgatus
           PC510]
          Length = 759

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R  +E +Y  +   A  G + ++  ++   A  + EY   R +    + S+   +ER  +
Sbjct: 207 RPGIERLYRSVRQFAS-GKKGMVYAISIEHARRIAEYYSRRGVNAVAVDSKTPAMERKRM 265

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + R GK +VLV +++  EG D P+   V +          S    +Q +GR  R    
Sbjct: 266 VEEFRHGKIEVLVNVDVFSEGFDCPDVEFVQLARPTL-----SLAKYLQQVGRGLRRSEG 320

Query: 685 K 685
           K
Sbjct: 321 K 321


>gi|257896496|ref|ZP_05676149.1| helicase [Enterococcus faecium Com12]
 gi|257833061|gb|EEV59482.1| helicase [Enterococcus faecium Com12]
          Length = 503

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  R   +H ++   +R+ ++R  + G  D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|240122804|ref|ZP_04735760.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID332]
 gi|268681416|ref|ZP_06148278.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID332]
 gi|268621700|gb|EEZ54100.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae PID332]
          Length = 680

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++ +   G+ +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPEPNIGL--VHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|227550862|ref|ZP_03980911.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
           TX1330]
 gi|257887886|ref|ZP_05667539.1| helicase [Enterococcus faecium 1,141,733]
 gi|257893315|ref|ZP_05672968.1| helicase [Enterococcus faecium 1,231,408]
 gi|293379275|ref|ZP_06625421.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
 gi|227179960|gb|EEI60932.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
           TX1330]
 gi|257823940|gb|EEV50872.1| helicase [Enterococcus faecium 1,141,733]
 gi|257829694|gb|EEV56301.1| helicase [Enterococcus faecium 1,231,408]
 gi|292642071|gb|EFF60235.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
          Length = 503

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  R   +H ++   +R+ ++R  + G  D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|254493027|ref|ZP_05106198.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 1291]
 gi|226512067|gb|EEH61412.1| ATP-dependent DNA helicase RecG [Neisseria gonorrhoeae 1291]
          Length = 680

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++ +   G+ +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPEPNIGL--VHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|225719342|gb|ACO15517.1| Eukaryotic initiation factor 4A-III [Caligus clemensi]
          Length = 403

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 262 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFR 316

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 317 SGQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 362


>gi|255281781|ref|ZP_05346336.1| ATP-dependent DNA helicase RecG [Bryantella formatexigens DSM
           14469]
 gi|255267848|gb|EET61053.1| ATP-dependent DNA helicase RecG [Bryantella formatexigens DSM
           14469]
          Length = 685

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 19/128 (14%)

Query: 595 AEDLTEY------LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           AED+  Y      +   +IR+ Y+H ++K  E+ E++     G   VLV   ++  G+++
Sbjct: 486 AEDVISYTERLREVMPEDIRIEYLHGKMKPKEKNEVMERFLCGDIQVLVSTTVVEVGVNV 545

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITKSIQLAIDETTRR 707
           P   ++ I +A++ G       L Q  GR  R    S  I+ + T         +E TR+
Sbjct: 546 PNATVMMIENAERFGL----AQLHQLRGRVGRGKAQSYCIMISST--------DNEKTRK 593

Query: 708 REKQLEHN 715
           R + L H+
Sbjct: 594 RLEILNHS 601


>gi|238491700|ref|XP_002377087.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus flavus
           NRRL3357]
 gi|220697500|gb|EED53841.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus flavus
           NRRL3357]
          Length = 676

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L  +      +H +    ER   +   R G+  +LV   +   G
Sbjct: 453 LIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARG 512

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 513 LDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 548


>gi|186474065|ref|YP_001861407.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184196397|gb|ACC74361.1| DEAD/H associated domain protein [Burkholderia phymatum STM815]
          Length = 1497

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 10/164 (6%)

Query: 526 IVVSATPGSWELEQCQGIIVEQII-RPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQG 582
           +V   +P S E   C  + V  +  R   L  PPV + +  +    E VY+ +     Q 
Sbjct: 235 LVGGTSPDSDEPANCAIVDVGHVRERDLALEMPPVPLEAVMSNEAWELVYNRLAELVAQH 294

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
              L+ V T+RMAE +  +L ER  +  V   H  +    R +  + L+ G+  VL+   
Sbjct: 295 RTTLVFVNTRRMAERVARHLTERLGKDAVAAHHGSLAKEHRFDAEQRLKRGELRVLIATA 354

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            L  G+DI +  LV      + G  R+    +Q +GR+  +V  
Sbjct: 355 SLELGIDIGDVDLVC-----QMGSPRAIAPFLQRVGRSGHHVGG 393


>gi|126338208|ref|XP_001370190.1| PREDICTED: similar to initiation factor 4AII [Monodelphis
           domestica]
          Length = 620

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 495 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 554

Query: 651 CGLV 654
             LV
Sbjct: 555 VSLV 558


>gi|145588218|ref|YP_001154815.1| primosomal protein N' [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145046624|gb|ABP33251.1| replication restart DNA helicase PriA [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 709

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           E+ +++  G  D++VG  ++ +G D    GLVA+LDAD   F        R    L+Q  
Sbjct: 491 ELFQEIHAGNVDIVVGTQMIAKGHDYQNIGLVAVLDADSRLFSPDFRAAERLFAQLVQVA 550

Query: 676 GRAARN 681
           GRA R+
Sbjct: 551 GRAGRS 556


>gi|143455890|sp|Q0DM51|RH3_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
           Flags: Precursor
 gi|18855061|gb|AAL79753.1|AC096687_17 putative RNA helicase [Oryza sativa Japonica Group]
          Length = 758

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 73/144 (50%), Gaps = 14/144 (9%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+   S RT + D+   I + A+ G  I+ T  TKR A++++  L   +I    +H ++ 
Sbjct: 331 PLTSTSKRTVLSDL---ITVYAKGGKTIVFTK-TKRDADEVSLALTN-SIASEALHGDIS 385

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI--LDADKEGFL-RSKTSLIQT 674
             +R   +   R GKF VLV  ++   GLDIP   L+    L  D E F+ RS  +    
Sbjct: 386 QHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT---- 441

Query: 675 IGRAARNVNSKVILYADTITKSIQ 698
            GRA +   + ++++ ++  ++++
Sbjct: 442 -GRAGK-AGTAILMFTNSQRRTVR 463


>gi|329735052|gb|EGG71349.1| helicase C-terminal domain protein [Staphylococcus epidermidis
           VCU028]
          Length = 952

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 563 SARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  +VE +  + N     G  L+ L+ V ++  A  L   L +R I    +  +     
Sbjct: 430 ASNERVEHIIKKTNYYGYSGDVLKGLIFVSSRGEAYQLANQLSKRGISSVGLTGKDSIAY 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E I+ L+ G  + ++ ++L  EG+DIPE   V +L   K   +      IQ +GR  R
Sbjct: 490 RAETIQQLKEGSINYIITVDLFNEGIDIPEINQVVMLRPTKSSII-----FIQQLGRGLR 544

Query: 681 NVNSK 685
              +K
Sbjct: 545 KSTNK 549


>gi|138895652|ref|YP_001126105.1| DNA/RNA helicase [Geobacillus thermodenitrificans NG80-2]
 gi|134267165|gb|ABO67360.1| DNA/RNA helicase [Geobacillus thermodenitrificans NG80-2]
          Length = 815

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 29/177 (16%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+   + R A+ L EY   R  R   +HS+  T+ R + I  L   + D +  ++L  
Sbjct: 451 RTLVFCSSIRQADFLCEYFRRRGYRTVSLHSKQTTIPRQQAIAMLEQCELDAIFTVDLFN 510

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-----VILYADTITKSIQ 698
           EG+DIP    +  +   +     S T   Q +GR  R    K     + L  +     ++
Sbjct: 511 EGVDIPSVDTLLFVRPTE-----SLTVFTQQVGRGLRLYEGKDYCVIIDLIGNYRNADVK 565

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
           L++ +T R                   K+K+ E + P + E   T  + +D Q + L
Sbjct: 566 LSLFDTQR----------------GETKKKVRESVMPTVPE---TCELHLDIQTIHL 603


>gi|115456345|ref|NP_001051773.1| Os03g0827700 [Oryza sativa Japonica Group]
 gi|113550244|dbj|BAF13687.1| Os03g0827700 [Oryza sativa Japonica Group]
          Length = 723

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 73/144 (50%), Gaps = 14/144 (9%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+   S RT + D+   I + A+ G  I+ T  TKR A++++  L   +I    +H ++ 
Sbjct: 296 PLTSTSKRTVLSDL---ITVYAKGGKTIVFTK-TKRDADEVSLALTN-SIASEALHGDIS 350

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI--LDADKEGFL-RSKTSLIQT 674
             +R   +   R GKF VLV  ++   GLDIP   L+    L  D E F+ RS  +    
Sbjct: 351 QHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT---- 406

Query: 675 IGRAARNVNSKVILYADTITKSIQ 698
            GRA +   + ++++ ++  ++++
Sbjct: 407 -GRAGK-AGTAILMFTNSQRRTVR 428


>gi|74212599|dbj|BAE31038.1| unnamed protein product [Mus musculus]
          Length = 286

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 161 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 220

Query: 651 CGLV 654
             LV
Sbjct: 221 VSLV 224


>gi|31794389|ref|NP_856882.1| ATP-dependent RNA helicase RhlE [Mycobacterium bovis AF2122/97]
 gi|31619985|emb|CAD95329.1| PROBABLE ATP-DEPENDENT RNA HELICASE RHLE [Mycobacterium bovis
           AF2122/97]
          Length = 527

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ + + L ER   V  +H ++  L R + ++  R G  DVLV  ++   G+DI
Sbjct: 279 TKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDI 336


>gi|118581024|ref|YP_902274.1| primosomal protein N' [Pelobacter propionicus DSM 2379]
 gi|118503734|gb|ABL00217.1| replication restart DNA helicase PriA [Pelobacter propionicus DSM
           2379]
          Length = 744

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 14/150 (9%)

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL--ERIEIIRDLRLGKFDVLVGINLLRE 644
           L   T+R+  +L E L   + R+  M S+  T       ++R +  G  D+L+G  ++ +
Sbjct: 501 LGAGTERVEHELRELLP--HARILRMDSDTTTGRGSHDRLLRRMNDGSADILIGTQMITK 558

Query: 645 GLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR-NVNSKVILYA-DTITK 695
           G D P   LV +++A+    +       R+   L Q  GRA R +   +VIL A D    
Sbjct: 559 GHDFPSVTLVGVINAEASLHMPDFRSSERTFQLLCQVFGRAGRGDTPGRVILQALDPGHY 618

Query: 696 SIQLAIDETTRRREKQ-LEHNKKHNINPQS 724
           +IQ AID  +    +Q LE  ++    P S
Sbjct: 619 AIQCAIDHDSAGFYRQELEFRREAGYPPFS 648


>gi|330876520|gb|EGH10669.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964238|gb|EGH64498.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 691

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+LT  L E  +RV  +H  +K  E+  I+ + + G   +LV   ++  G+D+P   L+ 
Sbjct: 507 EELTSALGE--VRVGLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLMI 564

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 565 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 602


>gi|319764638|ref|YP_004128575.1| ATP-dependent DNA helicase recg [Alicycliphilus denitrificans BC]
 gi|317119199|gb|ADV01688.1| ATP-dependent DNA helicase RecG [Alicycliphilus denitrificans BC]
          Length = 705

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 12/118 (10%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DL+E L    + V  +HS + + E+  ++ + + G+  VLV   ++  G+D+P   L+ I
Sbjct: 518 DLSEALP--GVTVGLLHSRMPSAEKKAVMEEFKSGRTGVLVSTTVIEVGVDVPNASLMVI 575

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTRRREKQL 712
             A++ G     + L Q  GR  R   +   V+LY+   +      + ET R R K +
Sbjct: 576 EHAERFGL----SQLHQLRGRVGRGAAASACVLLYSTGDSGR----LGETARDRLKAM 625


>gi|297566655|ref|YP_003685627.1| hypothetical protein Mesil_2251 [Meiothermus silvanus DSM 9946]
 gi|296851104|gb|ADH64119.1| Protein of unknown function DUF1998 [Meiothermus silvanus DSM 9946]
          Length = 797

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 13/115 (11%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLY---ERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           AA+ GLR L+   ++R AE +  Y      R  R  Y  +E + LE       L+ G+  
Sbjct: 320 AAEAGLRALVFANSRRTAELVARYAGIPEVRPYRAGYTATERRRLEA-----SLKAGETK 374

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           VLV  + L  G+DI E  +V +L     G+  S ++  Q  GRA R     ++++
Sbjct: 375 VLVSTSALELGVDIGELDMVVLL-----GYPGSLSAFWQRAGRAGRGNRRALVVW 424


>gi|301765278|ref|XP_002918060.1| PREDICTED: chromosome-associated kinesin KIF4A-like [Ailuropoda
           melanoleuca]
 gi|281352549|gb|EFB28133.1| hypothetical protein PANDA_006442 [Ailuropoda melanoleuca]
          Length = 1235

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 64/144 (44%), Gaps = 15/144 (10%)

Query: 147 YHPSGDQP----AAIAQLLKGIHSREKVQLLL-GVTGSGKTFTMAKVIEAMQ--RPAIVM 199
           + PS +Q      A+A L+KGI       +L  G TGSGKT++M     A Q   P + +
Sbjct: 55  FDPSTEQEEVFNTAVAPLIKGIFKGYNATVLAYGQTGSGKTYSMGGAYTAEQENEPTVGV 114

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYF--VSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
            P  I   QL   FK     N +E+   VSY + Y  E       +  EK S IN + D 
Sbjct: 115 IPRVI---QLL--FKEIDKKNDIEFTLKVSYLEIYNEEILDLLCPSR-EKASQINIREDP 168

Query: 258 MRHSATRSLLERNDCIVVSSVSCI 281
                   L E+   + + +VSC+
Sbjct: 169 KEGIKIVGLTEKTVVVALDTVSCL 192


>gi|262047224|ref|ZP_06020182.1| helicase [Lactobacillus crispatus MV-3A-US]
 gi|260572469|gb|EEX29031.1| helicase [Lactobacillus crispatus MV-3A-US]
          Length = 494

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++    R+ +++  R GK D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTRGLQARGYNAAEIHGDLSQARRMSVLKRFREGKLDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 307 SGVTHVYNYD---IPQDPDSYVHRIGRTGR 333


>gi|256089611|ref|XP_002580881.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238666537|emb|CAZ37120.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 151

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           ++R  E LT  L ER+  V  MH E++ +ER  I+   R G   +L+  +LL  G+D+ +
Sbjct: 73  SRRKVEWLTNELIERDFIVSAMHGEMEQIERDNIMTAFRSGSSRILISTDLLSRGIDVQQ 132

Query: 651 CGLVAILD 658
             LV   D
Sbjct: 133 ISLVINFD 140


>gi|255564033|ref|XP_002523015.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223537737|gb|EEF39357.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 956

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A ++G ++++   TKR+ + L   +  +      +H +    ER  ++   R GK  +LV
Sbjct: 729 AQERGSKVIIFCSTKRLCDQLARSIGHQ-FGAAAIHGDKSQGERDWVLNQFRSGKSPILV 787

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI +  +V   D     F       +  IGR  R   + V + A  I  +I
Sbjct: 788 ATDVAARGLDIKDIRVVINYD-----FPTGIEDYVHRIGRTGRAGATGVNVAAHMIATTI 842

Query: 698 QLAID 702
            + +D
Sbjct: 843 WMVVD 847


>gi|213970706|ref|ZP_03398831.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           T1]
 gi|301382593|ref|ZP_07231011.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059230|ref|ZP_07250771.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           K40]
 gi|213924540|gb|EEB58110.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           T1]
          Length = 691

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+LT  L E  +RV  +H  +K  E+  I+ + + G   +LV   ++  G+D+P   L+ 
Sbjct: 507 EELTSALGE--VRVGLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLMI 564

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 565 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 602


>gi|195143531|ref|XP_002012751.1| GL23778 [Drosophila persimilis]
 gi|194101694|gb|EDW23737.1| GL23778 [Drosophila persimilis]
          Length = 2278

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 563 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 617

Query: 683 NSKVILYADTIT 694
              VIL A   T
Sbjct: 618 AYHVILVAPRYT 629


>gi|123454959|ref|XP_001315228.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121897898|gb|EAY03005.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 955

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +I +I+  R G ++VLV   +  EGLDI E  L+   D  K     S T  IQ +GR  R
Sbjct: 394 QINLIQSFRRGIYNVLVATAIGEEGLDIGEVDLIICYDVQK-----SITRTIQRMGRTGR 448

Query: 681 NVNSKVIL 688
             + KVI 
Sbjct: 449 KRDGKVIF 456


>gi|125773725|ref|XP_001358121.1| GA18437 [Drosophila pseudoobscura pseudoobscura]
 gi|54637856|gb|EAL27258.1| GA18437 [Drosophila pseudoobscura pseudoobscura]
          Length = 2280

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 565 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPT-----TYRSYVQCKGRARAAP 619

Query: 683 NSKVILYADTIT 694
              VIL A   T
Sbjct: 620 AYHVILVAPRYT 631


>gi|331018574|gb|EGH98630.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 691

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+LT  L E  +RV  +H  +K  E+  I+ + + G   +LV   ++  G+D+P   L+ 
Sbjct: 507 EELTSALGE--VRVGLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLMI 564

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 565 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 602


>gi|328790612|ref|XP_003251437.1| PREDICTED: eukaryotic initiation factor 4A-like [Apis mellifera]
          Length = 548

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++      + ++   T+R  + LTE +  R+  V  MH +++  ER  I+R  R
Sbjct: 407 DLYDTLSIT-----QAVIFCNTRRKVDWLTESMRTRDFTVSAMHGDMEQKERDLIMRQFR 461

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 462 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 499


>gi|325295610|ref|YP_004282124.1| primosomal protein N' [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325066058|gb|ADY74065.1| primosomal protein N' [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 786

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 7/64 (10%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG----FLRSK---TSLIQTIG 676
           II+D++ GK+DV+VG  +  +G + P+  LV +L AD  G    ++ S+    +++ T G
Sbjct: 583 IIKDIKEGKYDVIVGTQIASKGHNFPKLTLVGVLMADLLGGAPDYMASERIFQTIVHTTG 642

Query: 677 RAAR 680
           RA R
Sbjct: 643 RAGR 646


>gi|325001944|ref|ZP_08123056.1| ATP-dependent DNA helicase, RecQ family protein [Pseudonocardia sp.
           P1]
          Length = 706

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           LT + A+++ E+L ER   VR    +    +R+    DL+  +   LV  + L  G D P
Sbjct: 265 LTVQAADEVAEFLRERGFAVRSYSGKTDPEQRLAAESDLQENRVKALVATSALGMGFDKP 324

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVIL 688
           + G V  L A       S  +  Q IGRA R +  ++V+L
Sbjct: 325 DLGFVVHLGAPA-----SPVAYYQQIGRAGRALERAEVVL 359


>gi|307167458|gb|EFN61031.1| Probable ATP-dependent RNA helicase DDX52 [Camponotus floridanus]
          Length = 498

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           Q+G+   +L+ V +K  A++L   L    I V  +H++  T +R  I+R  R G+  VL+
Sbjct: 314 QKGISPPVLVFVQSKERAQELFNELIYDGINVDVIHADRTTTQRDNIVRCFREGQIWVLI 373

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+  G+D     LV   D     F  S  S I  IGR  R
Sbjct: 374 CTELMSRGIDFKGVNLVINYD-----FPPSAISYIHRIGRTGR 411


>gi|302782918|ref|XP_002973232.1| hypothetical protein SELMODRAFT_267628 [Selaginella moellendorffii]
 gi|300158985|gb|EFJ25606.1| hypothetical protein SELMODRAFT_267628 [Selaginella moellendorffii]
          Length = 597

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TKR A+ L ++L         +H +    ER + +R  R G   +LV  ++   
Sbjct: 411 MLVFVETKRGADALEDWLIRSGFPATTIHGDRTQPEREQALRCFRTGMTPILVATDVAAR 470

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           GLDIP    V   D   +         +  IGR  R  NS +
Sbjct: 471 GLDIPHVAHVINYDLPSD-----IDDYVHRIGRTGRAGNSGL 507


>gi|291236621|ref|XP_002738237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21-like
           [Saccoglossus kowalevskii]
          Length = 700

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 93/235 (39%), Gaps = 31/235 (13%)

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           P  + +Y+ +++L      HV + ++  M    F   A   E        MDN P     
Sbjct: 246 PGRILDYVQKNTLNLSQLKHVILDEVDRMLDMGF---ADTVEEILSASYKMDN-PGE--- 298

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSA-RTQ 567
                P T++ SAT   W     +  +  +I R          T      + IR   R +
Sbjct: 299 ----NPQTLLFSATLPEWVYRTAKKYMKSEIKRVDLIGQQKLKTATTVEHLAIRCHYRQR 354

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSEVKTLERIEII 625
              + D + + + +  R ++   TK+   D  E     +IR  V+ +H ++   +R   +
Sbjct: 355 AATISDVVQVYSGKHGRCMIFTETKK---DANEMGLSSSIRQDVQVLHGDIAQNQREITL 411

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  R GKF  LV  ++   GLDIPE  L+ + +  K+       + I   GR  R
Sbjct: 412 KGFRDGKFRCLVATDVAARGLDIPEVDLIVMCEPPKDA-----ENYIHRSGRTGR 461


>gi|262282226|ref|ZP_06059995.1| II ATP-dependent DNA/RNA helicase [Streptococcus sp. 2_1_36FAA]
 gi|262262680|gb|EEY81377.1| II ATP-dependent DNA/RNA helicase [Streptococcus sp. 2_1_36FAA]
          Length = 433

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 6/89 (6%)

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T  R+EI++D R  K  +LV   +L  G+  P C  V +L+A+   F RS  +L+Q  GR
Sbjct: 338 TENRLEIVQDFRDKKISILVTTTILERGVTFP-CVDVIVLEANHRLFTRS--ALVQIGGR 394

Query: 678 AARNV---NSKVILYADTITKSIQLAIDE 703
             R++      ++ + D     I+ AI+E
Sbjct: 395 VGRSMERPTGDLLFFHDGTNIQIEKAINE 423


>gi|257063714|ref|YP_003143386.1| RecG-like helicase [Slackia heliotrinireducens DSM 20476]
 gi|256791367|gb|ACV22037.1| RecG-like helicase [Slackia heliotrinireducens DSM 20476]
          Length = 723

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 19/129 (14%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + +V  +H  +    +   + D R G+ DVLV   ++  G+D+P   ++ I DAD+ G  
Sbjct: 539 DFKVGLLHGRMDAKAKHAAMEDFRAGQTDVLVCTTVIEVGVDVPNATVMIIEDADRFGL- 597

Query: 666 RSKTSLIQTIGRAARNVN-SKVILYADTITK--------------SIQLAIDETTRRREK 710
              + L Q  GR  R     +V L A T ++                +LA  +   RRE 
Sbjct: 598 ---SQLHQLRGRVGRGTKPGEVYLIAATSSEDALERLSAMEATDDGFELAERDLALRREG 654

Query: 711 QLEHNKKHN 719
            +  N++H 
Sbjct: 655 DILGNRQHG 663


>gi|256853014|ref|ZP_05558384.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256711473|gb|EEU26511.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
          Length = 449

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 82/155 (52%), Gaps = 14/155 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++T+YL ++ ++V  +H ++   ER  ++R ++   +  +V  +L   G+DI  
Sbjct: 252 TKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAARGIDIE- 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNV--NSKVILYA----DTITKSIQLAIDET 704
            G+  +++A+    L      I  +GR  RN    + + LY+    + IT+  QL +  +
Sbjct: 311 -GVSHVINAEVPHEL---DFFIHRVGRTGRNGLNGTAITLYSPADDEAITQIEQLGV--S 364

Query: 705 TRRRE-KQLEHNKKHNINPQSVKEKIMEVIDPILL 738
            + +E K  E  + ++ N ++ +EK  E +DP L+
Sbjct: 365 FKPKEIKNGEIVETYDRNRRTKREKSREELDPTLI 399


>gi|255975964|ref|ZP_05426550.1| helicase [Enterococcus faecalis T2]
 gi|255968836|gb|EET99458.1| helicase [Enterococcus faecalis T2]
          Length = 449

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 83/155 (53%), Gaps = 14/155 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++T+YL ++ ++V  +H ++   ER  ++R ++   +  +V  +L   G+DI  
Sbjct: 252 TKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAARGIDIE- 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVI-LYA----DTITKSIQLAIDET 704
            G+  +++A+    L      I  +GR  RN +N   I LY+    + IT+  QL +  +
Sbjct: 311 -GVSHVINAEVPHEL---DFFIHRVGRTGRNGLNGTAITLYSPADDEAITQIEQLGV--S 364

Query: 705 TRRRE-KQLEHNKKHNINPQSVKEKIMEVIDPILL 738
            + +E K  E  + ++ N ++ +EK  E +DP L+
Sbjct: 365 FKPKEIKNGEIVETYDRNRRTKREKSREELDPTLI 399


>gi|269957066|ref|YP_003326855.1| ATP-dependent DNA helicase RecG [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305747|gb|ACZ31297.1| ATP-dependent DNA helicase RecG [Xylanimonas cellulosilytica DSM
           15894]
          Length = 749

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 14/142 (9%)

Query: 556 DPPVEIRSARTQVEDVYDEINLAA-----QQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           D  V  ++A T  +DV D + L+A     +  LR +L V     A+ L E      + V 
Sbjct: 515 DDEVSGKAAATDFDDVPDFLALSAGDVPDRTPLRAVLEV-----ADQLRETPALAGLAVD 569

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H ++   E+   +     G   VLV   ++  G+D+PE  ++ + DAD+ G     + 
Sbjct: 570 VLHGQLPPAEKDAAMTRFAAGTSQVLVSTTVIEVGVDVPEATVMVVFDADRFGL----SQ 625

Query: 671 LIQTIGRAARNVNSKVILYADT 692
           L Q  GR  R     + L   T
Sbjct: 626 LHQLRGRVGRGSAPGLCLLVST 647


>gi|269798436|ref|YP_003312336.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
 gi|269095065|gb|ACZ25056.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
           2008]
          Length = 515

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++TE L +R      +H ++   +R  +IR  R G  D+LV  ++   GLDI  
Sbjct: 250 TKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDI-- 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  +   GRA +
Sbjct: 308 SGVSHVYNYDMPQDPESYTHRVGRTGRAGK 337


>gi|222085971|ref|YP_002544503.1| ATP-dependent DNA helicase RecG [Agrobacterium radiobacter K84]
 gi|221723419|gb|ACM26575.1| ATP-dependent DNA helicase RecG [Agrobacterium radiobacter K84]
          Length = 701

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 22/90 (24%)

Query: 148 HPSGD----------------QPAAIAQLLKGIHSREK-VQLLLGVTGSGKTF----TMA 186
           HP+GD                Q AAIA +LK +   ++ ++LL G  G+GKT      +A
Sbjct: 257 HPTGDISRKILESLPFSLTNSQTAAIADILKDMAGTDRMLRLLQGDVGAGKTLVALMAIA 316

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            VIE+  + A++MAP +ILA Q Y+    F
Sbjct: 317 AVIESGGQ-AVLMAPTEILARQHYATIAKF 345


>gi|196249572|ref|ZP_03148269.1| type III restriction protein res subunit [Geobacillus sp. G11MC16]
 gi|196210866|gb|EDY05628.1| type III restriction protein res subunit [Geobacillus sp. G11MC16]
          Length = 815

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 29/177 (16%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+   + R A+ L EY   R  R   +HS+  T+ R + I  L   + D +  ++L  
Sbjct: 451 RTLVFCSSIRQADFLCEYFRRRGYRTVSLHSKQTTIPRQQAIAMLEQCELDAIFTVDLFN 510

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-----VILYADTITKSIQ 698
           EG+DIP    +  +   +     S T   Q +GR  R    K     + L  +     ++
Sbjct: 511 EGVDIPSVDTLLFVRPTE-----SLTVFTQQVGRGLRLYEGKDYCVIIDLIGNYRNADVK 565

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
           L++ +T R                   K+K+ E + P + E   T  + +D Q + L
Sbjct: 566 LSLFDTQR----------------GETKKKVRESVMPTVPE---TCELHLDIQTIHL 603


>gi|195481394|ref|XP_002086716.1| GE11154 [Drosophila yakuba]
 gi|194186506|gb|EDX00118.1| GE11154 [Drosophila yakuba]
          Length = 1371

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ++++I+ D R G  +VLV  ++  EG+D+ E  ++   D        + T  +Q IGR  
Sbjct: 361 QQLQIMSDFRSGTSNVLVATSIGEEGIDVGEVEMIVCFDISSS----NPTRFVQRIGRTG 416

Query: 680 RNVNSKVIL 688
           R  N +V++
Sbjct: 417 RKKNGEVVM 425


>gi|195344412|ref|XP_002038781.1| GM10427 [Drosophila sechellia]
 gi|194133802|gb|EDW55318.1| GM10427 [Drosophila sechellia]
          Length = 1593

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ++++I+ D R G  +VLV  ++  EGLD+ E  ++   D        + T  IQ IGR  
Sbjct: 481 QQLQIMTDFRSGTSNVLVATSIGEEGLDVGEVEMIVCFDICST----NPTRFIQRIGRTG 536

Query: 680 RNVNSKVIL 688
           R  N +V++
Sbjct: 537 RKKNGEVVM 545


>gi|167032697|ref|YP_001667928.1| transcription-repair coupling factor [Pseudomonas putida GB-1]
 gi|166859185|gb|ABY97592.1| transcription-repair coupling factor [Pseudomonas putida GB-1]
          Length = 1141

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 39/208 (18%), Positives = 90/208 (43%), Gaps = 21/208 (10%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   +  R  +++  +   A +L  E + F P   V  F  +    YD 
Sbjct: 13  LPGAALSLAIAEAATSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDWETLPYDL 72

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +       
Sbjct: 73  FSPH-----QDIISQRIASLY-RLPELSHG----------ILVVPITTALHRLAPTRFLL 116

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G +++ +++ + L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 117 GSSLVLDVGQTIDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMG-SKLPYRID 175

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKI 379
           +F ++IE +  F P T + I  V+++++
Sbjct: 176 LFDDEIETLRTFDPETQRSIDKVDSVRL 203



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VLV   ++  G+D+P  
Sbjct: 817 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSA 874

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             + I  ADK G       L Q  GR  R+ +     YA  +T + Q    +  +R E
Sbjct: 875 NTIVIERADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPTRQKVSADAEKRLE 925


>gi|166366739|ref|YP_001659012.1| helicase protein [Microcystis aeruginosa NIES-843]
 gi|166089112|dbj|BAG03820.1| probable helicase protein [Microcystis aeruginosa NIES-843]
          Length = 500

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 20/154 (12%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDL--------TEYLYERNIRVRYMHSEVKTLERIEII 625
           EI+   Q  LR+L  ++ +   E +        T Y    +  +  +  +    ER EI+
Sbjct: 314 EISSGTQGKLRVLAELICEHHPEPILIFTNDNATVYRISESFLIPAITHQTPVKERHEIL 373

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV--- 682
              R G++ +LV  ++L EG+D+PE  +  IL         S    IQ +GR  R     
Sbjct: 374 TRFRQGEYKILVTSHVLNEGVDVPEARIAIILSGTG-----STREYIQRLGRVLRKGQQE 428

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
           + + ILY + I ++     +E T +R +  + NK
Sbjct: 429 DKRAILY-EVIAEN---TTEEKTSQRRRGEQKNK 458


>gi|161506849|ref|YP_001576803.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus DPC
           4571]
 gi|160347838|gb|ABX26512.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus DPC
           4571]
          Length = 503

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++    R+ +++  R GK D+LV  ++   GLDI  
Sbjct: 253 TKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVAARGLDI-- 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 311 SGVTHVYNYD---IPQDPDSYVHRIGRTGR 337


>gi|116671594|ref|YP_832527.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp.
           FB24]
 gi|116611703|gb|ABK04427.1| ATP-dependent RNA helicase CsdA [Arthrobacter sp. FB24]
          Length = 747

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 8/160 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ++  V TK   EDL + L  R  +   ++ ++   +R   +  L+ G+ D+LV  ++   
Sbjct: 338 VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAAR 397

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R+ ++  IL+     K +  +I+
Sbjct: 398 GLDVERISHVVNYDIPHDTESYVHR----IGRTGRAGRSGDA--ILFMTPREKYLLRSIE 451

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + TR+  +Q+       +N   + +    + + +  ED A
Sbjct: 452 KATRQPVEQMHLPTAETVNTLRLGKFAERITETLASEDVA 491


>gi|71000162|ref|XP_754798.1| eukaryotic translation initiation factor 4 [Aspergillus fumigatus
           Af293]
 gi|74674080|sp|Q4WX43|IF4A_ASPFU RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|66852435|gb|EAL92760.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           fumigatus Af293]
 gi|159127807|gb|EDP52922.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           fumigatus A1163]
          Length = 406

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 273 TRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 332

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 333 VSLVINYDLPANRENYI 349


>gi|297202208|ref|ZP_06919605.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|297148059|gb|EDY61279.2| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 723

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL +++   TKR A DL + L +R      +H ++    R + +R  R GK DVLV
Sbjct: 223 AEGRGL-VMVFCRTKRTAADLADQLKQRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLV 281

Query: 638 GINLLREGLDI 648
             ++   G+D+
Sbjct: 282 CTDVAARGIDV 292


>gi|239629010|ref|ZP_04672041.1| transcription-repair coupling factor [Clostridiales bacterium
           1_7_47_FAA]
 gi|239519156|gb|EEQ59022.1| transcription-repair coupling factor [Clostridiales bacterium
           1_7_47FAA]
          Length = 1186

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V + H +++  E   I+ D   G+ DVLV   ++  GLDIP    + I DAD+ G     
Sbjct: 874 VTFAHGQMREHELERIMADFINGEIDVLVSTTIIETGLDIPNANTMIIHDADRMGL---- 929

Query: 669 TSLIQTIGRAARN 681
           + L Q  GR  R+
Sbjct: 930 SQLYQLRGRVGRS 942


>gi|163856004|ref|YP_001630302.1| transcription-repair coupling factor [Bordetella petrii DSM 12804]
 gi|163259732|emb|CAP42033.1| transcription-repair coupling factor [Bordetella petrii]
          Length = 1153

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 39/191 (20%), Positives = 72/191 (37%), Gaps = 23/191 (12%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQ 233
           GS   + +A +     RP +V+    + A +L  E   F P   V     +    YD + 
Sbjct: 36  GSADAWLLADLARQAARPLVVLTAAPLEAQRLADEIPQFAPDLRVRQLPDWETLPYDAFS 95

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQ 292
           P                 ++ +   R     +L++R  D ++V   + +Y +      + 
Sbjct: 96  P-----------------HQDLVSQRLHTLHALMQRTVDVLLVPVTTALYRLAPPSFLAA 138

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
                K  D +++  L + L    Y         G F + G  I++FP     V +R+ +
Sbjct: 139 YTFSFKQKDRLDEAALRAQLTLANYTHVTQVTAPGEFCLRGGLIDLFPMG-SAVPYRLDL 197

Query: 353 FGNDIEEISEF 363
           F ++IE I  F
Sbjct: 198 FDDEIESIRSF 208


>gi|78042906|ref|YP_359101.1| DEAD-box ATP dependent DNA helicase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995021|gb|ABB13920.1| ATP-dependent RNA helicase, DEAD box family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 430

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++ E L  R    + +H ++   ER + I+  + GK ++LV  ++   GLDIP+
Sbjct: 248 TKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPD 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRRE 709
              V   D  +     +  S I  IGR  R     K I   +   + +  AI+E   +R 
Sbjct: 308 VSHVINFDIPQ-----NPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEEAINKRL 362

Query: 710 KQ 711
           K+
Sbjct: 363 KR 364


>gi|169773691|ref|XP_001821314.1| ATP-dependent RNA helicase ded1 [Aspergillus oryzae RIB40]
 gi|91206555|sp|Q2UGK3|DED1_ASPOR RecName: Full=ATP-dependent RNA helicase ded1
 gi|83769175|dbj|BAE59312.1| unnamed protein product [Aspergillus oryzae]
          Length = 675

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L  +      +H +    ER   +   R G+  +LV   +   G
Sbjct: 452 LIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARG 511

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 512 LDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 547


>gi|73662111|ref|YP_300892.1| ATP-dependent RNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123643052|sp|Q49Z29|Y802_STAS1 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SSP0802
 gi|72494626|dbj|BAE17947.1| putative ATP-dependent RNA helicase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 506

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 336


>gi|327282752|ref|XP_003226106.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Anolis
           carolinensis]
          Length = 697

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++ V  K  A+DL+     + I V+ +HS  +  +R + + D R G+  VLV  +L  
Sbjct: 538 KVIIFVGKKLTADDLSSDFSLQGIPVQSLHSNREQCDREQALEDFRQGRVRVLVATDLAS 597

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     F R+    +  +GR  R
Sbjct: 598 RGLDVQDITHVFNFD-----FPRNIEEYVHRVGRTGR 629


>gi|289643147|ref|ZP_06475276.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca
           glomerata]
 gi|289507039|gb|EFD28009.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca
           glomerata]
          Length = 829

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +   E+ E +     G+ DVLV   ++  G+D+P   ++ ++DAD+ G  
Sbjct: 645 GLRVEALHGRLPPDEKEETMTRFAAGELDVLVATTVIEVGVDVPNATVMVVMDADRFGV- 703

Query: 666 RSKTSLIQTIGRAARN-VNSKVILYAD 691
              + L Q  GR  R       +LY D
Sbjct: 704 ---SQLHQLRGRVGRGSAPGWCLLYTD 727


>gi|269978182|ref|ZP_06185132.1| ATP-dependent DNA helicase RecG [Mobiluncus mulieris 28-1]
 gi|269933691|gb|EEZ90275.1| ATP-dependent DNA helicase RecG [Mobiluncus mulieris 28-1]
          Length = 836

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + ++HS + +  +   I D   G   +LV   ++  G+D+PE  ++ ILDAD+ G     
Sbjct: 656 ITWVHSGLDSGAKQRAIADFVSGVAPLLVSTTVIEVGMDVPEASMMIILDADRFGL---- 711

Query: 669 TSLIQTIGRAARNVNSKVIL 688
           + L Q  GR  R V   V L
Sbjct: 712 SQLHQLRGRIGRGVRPGVCL 731


>gi|237727656|ref|ZP_04558137.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229434512|gb|EEO44589.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 751

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R  +E +Y  +   A  G + ++  ++   A  + EY   R +    + S+   +ER  +
Sbjct: 199 RPGIERLYRSVRQFAS-GKKGMVYAISIEHARRIAEYYSRRGVNAVAVDSKTPAMERKRM 257

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + R GK +VLV +++  EG D P+   V +          S    +Q +GR  R    
Sbjct: 258 VEEFRHGKIEVLVNVDVFSEGFDCPDVEFVQLARPTL-----SLAKYLQQVGRGLRRSEG 312

Query: 685 K 685
           K
Sbjct: 313 K 313


>gi|256821642|ref|YP_003145605.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795181|gb|ACV25837.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 598

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 8/141 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK    +L + L  R  R   ++ ++    R  I+  L+ G+ D+L+  ++   
Sbjct: 250 MIIFVRTKIATTELADKLTARGFRAEALNGDIAQTTRERIVEKLKKGQIDILIATDVAAR 309

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R+ N+  IL+     + +  AI+
Sbjct: 310 GLDVERISHVVNYDIPYDTESYVHR----IGRTGRAGRSGNA--ILFVAHRERRMLKAIE 363

Query: 703 ETTRRREKQLEHNKKHNINPQ 723
             T +   +++     NIN Q
Sbjct: 364 RATNQPITEMQMPSIDNINEQ 384


>gi|227015821|gb|ACP17918.1| putative transcription-repair coupling factor [Pseudomonas
           nitroreducens]
          Length = 1154

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           R   +VV   + ++ +   +      + L +G  ++ +++ S      Y+  D     G 
Sbjct: 102 RRGVLVVPITTALHRLAPAKFLLGSSLVLDVGQKLDVEQMRSRFEAAGYRCVDTVYEHGE 161

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           F V G  I++FP   E + +R+ +F ++IE +  F P T + I  VE+I++     +
Sbjct: 162 FAVRGALIDLFPMGSE-LPYRIDLFDDEIETLRTFDPETQRSIDKVESIRLLPAREF 217



 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E  I + +     + LER+  + D    +F+VLV   ++  G+D+P  
Sbjct: 830 EKCARDLAELVPEARIGIGHGQMNERELERV--MSDFYHKRFNVLVASTIIETGIDVPSA 887

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 888 NTILIERADKFGL----AQLHQLRGRVGRS 913


>gi|213018866|ref|ZP_03334674.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212995817|gb|EEB56457.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 402

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TKR A+ L + L++ +     +H +++  +R  +I   R G+  ++V  ++   
Sbjct: 237 IIIFVKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIMVATDVASR 296

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           GLDIP    V   D  +     S+   +  IGR AR
Sbjct: 297 GLDIPHIQHVINYDVPQ-----SQADYVHRIGRTAR 327


>gi|195498547|ref|XP_002096570.1| GE25739 [Drosophila yakuba]
 gi|194182671|gb|EDW96282.1| GE25739 [Drosophila yakuba]
          Length = 1495

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ++++I+ D R G  +VLV  ++  EG+D+ E  ++   D        + T  +Q IGR  
Sbjct: 485 QQLQIMSDFRSGTSNVLVATSIGEEGIDVGEVEMIVCFDISSS----NPTRFVQRIGRTG 540

Query: 680 RNVNSKVIL 688
           R  N +V++
Sbjct: 541 RKKNGEVVM 549


>gi|116008407|ref|NP_650971.2| CG7922 [Drosophila melanogaster]
 gi|113194811|gb|AAF55897.2| CG7922 [Drosophila melanogaster]
          Length = 1489

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ++++I+ D R G  +VLV  ++  EGLD+ E  ++   D        + T  IQ IGR  
Sbjct: 481 QQLQIMTDFRSGTSNVLVATSIGEEGLDVGEVEMIVCFDI----CSTNPTRFIQRIGRTG 536

Query: 680 RNVNSKVIL 688
           R  N +V++
Sbjct: 537 RKKNGEVVM 545


>gi|84995732|ref|XP_952588.1| eukaryotic translation initiation factor 4a [Theileria annulata
           strain Ankara]
 gi|65302749|emb|CAI74856.1| eukaryotic translation initiation factor 4a, putative [Theileria
           annulata]
          Length = 400

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT  + E++  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 275 TRRKVDYLTLKMQEKDFTVSSMHGDMGQKERDLIMREFRSGSTRVLITTDLLARGIDVQQ 334

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        S  + I  IGR+ R
Sbjct: 335 VSLVINYD-----LPMSPDNYIHRIGRSGR 359


>gi|118351203|ref|XP_001008880.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89290647|gb|EAR88635.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 643

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 33/231 (14%)

Query: 519 NCLRP-TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVYD 573
           NC R   T++ SAT  S E+ +   I + + IR    P G  +  +  +  R Q ED  +
Sbjct: 362 NCNRERQTLLFSATLTS-EVNKLIDIALRKPIRIQANPDGQTNDKLIQKMLRIQHEDFRE 420

Query: 574 EINLAAQQGL---RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
              LA        R ++   TKR    +        ++V  +H ++   +RI+   D + 
Sbjct: 421 AALLAIAAKYYKERTIIFFKTKRQTHRMAIIFGLFGLKVCELHGDLTQNQRIQAFSDFKE 480

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK-TSLIQTIGRAARNVNSKVILY 689
           GK+  L+  +L   GLDI   G+ A+++ +    L S+ T  I  +GR AR  N  +   
Sbjct: 481 GKYQYLMATDLASRGLDIQ--GVKAVINFE----LPSEVTRYIHRVGRTARAGNEGI--- 531

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINP--------QSVKEKIMEV 732
                 S+ + +D   +  +K L+ NK   +          Q  KEKI  V
Sbjct: 532 ------SLTIGLDAELKTLKKMLKENKDKMMEKVSLSVETLQKYKEKIQNV 576


>gi|152974078|ref|YP_001373595.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152022830|gb|ABS20600.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 511

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV  ++   GLDI  
Sbjct: 261 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI-- 318

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRR 708
            G+  + + D     +   S +  IGR  R   + + +   T  +  QL  I+ TT+R+
Sbjct: 319 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKTGLAMLFVTPREMGQLKNIERTTKRK 374


>gi|315604928|ref|ZP_07879985.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313364|gb|EFU61424.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 598

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 14/134 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A+   R ++   TKR A  L E L  R   V  +H ++    R + +R  R GK DVL
Sbjct: 316 LQAEGRGRTVIFCRTKRTAARLGEDLTARGFAVGALHGDLGQGAREQALRAFRKGKVDVL 375

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL----YADT 692
           V  ++   G+D+ +   V      ++     +   I  IGR  R  NS   +    + DT
Sbjct: 376 VATDVAARGIDVDDVTHVINYQCPED-----EKIYIHRIGRTGRAGNSGTAVTFVDWDDT 430

Query: 693 -----ITKSIQLAI 701
                I+K++ L +
Sbjct: 431 PRWSLISKALGLGV 444


>gi|313638753|gb|EFS03844.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL S4-171]
          Length = 525

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV  ++   GLDI  
Sbjct: 249 TKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R       I +           ++ETT++R 
Sbjct: 307 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRM 363

Query: 710 KQLE 713
           + L+
Sbjct: 364 QPLQ 367


>gi|302133612|ref|ZP_07259602.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 691

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+LT  L E  +RV  +H  +K  E+  I+ + + G   +LV   ++  G+D+P   L+ 
Sbjct: 507 EELTSALGE--VRVGLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLMI 564

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 565 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 602


>gi|261416325|ref|YP_003250008.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372781|gb|ACX75526.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 802

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK+   ++ E L  R   V  ++ ++    R   I  L++GK D++V  ++   
Sbjct: 366 VLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVATDVAAR 425

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           G+D+    LV   D   D E ++      I   GRA R+ N+  IL+     K +   I+
Sbjct: 426 GIDVDRISLVVNYDIPYDTESYVHR----IGRTGRAGRSGNA--ILFITPREKRMLKTIE 479

Query: 703 ETTRR 707
           + TR+
Sbjct: 480 KATRQ 484


>gi|194388532|dbj|BAG60234.1| unnamed protein product [Homo sapiens]
          Length = 229

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 104 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 163

Query: 651 CGLV 654
             LV
Sbjct: 164 VSLV 167


>gi|89099486|ref|ZP_01172362.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
 gi|89085872|gb|EAR64997.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
          Length = 479

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 42/195 (21%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L  R      +H ++   +R+ ++R  + G  DVLV  ++   GLDI  
Sbjct: 230 TKRRVDELAEALNLRGFLAEGIHGDLSQAKRMSVLRKFKEGSIDVLVATDVAARGLDI-- 287

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
            G+  + + D     +   S +  IGR  R     + +   T  +   LA+ E T     
Sbjct: 288 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKEGMAMTFITPREKSYLAVVERT----- 339

Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQ 770
                          K K+ +++ P L E       +++ QQ +   K  +A        
Sbjct: 340 --------------TKSKMGKMVPPTLAE-------ALEGQQKAAVDKISQA-------- 370

Query: 771 MHLAADNL-NFEEAA 784
             ++A+NL N++EAA
Sbjct: 371 --ISANNLENYKEAA 383


>gi|186680838|ref|YP_001864034.1| primosome assembly protein PriA [Nostoc punctiforme PCC 73102]
 gi|186463290|gb|ACC79091.1| primosomal protein N' [Nostoc punctiforme PCC 73102]
          Length = 842

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 12/101 (11%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFL---------RSKTSLIQTIGRAAR- 680
           G+ D+LVG  +L +GLD+P+  LV ++ AD  G L         R+  +L Q  GRA R 
Sbjct: 648 GEADLLVGTQMLTKGLDLPQVTLVGVVAAD--GLLNLSDYRASERAFQTLTQVAGRAGRG 705

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN 721
           N   +VI+   T    +  A+         Q E  ++  +N
Sbjct: 706 NDPGRVIVQTYTTEHQVIAAVRSHDYHSFSQAELEQRQALN 746


>gi|313893137|ref|ZP_07826714.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442490|gb|EFR60905.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 523

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++TE L +R      +H ++   +R  +IR  R G  D+LV  ++   GLDI  
Sbjct: 250 TKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDI-- 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  +   GRA +
Sbjct: 308 SGVSHVYNYDMPQDPESYTHRVGRTGRAGK 337


>gi|294794656|ref|ZP_06759792.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
 gi|294454986|gb|EFG23359.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
          Length = 515

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++TE L +R      +H ++   +R  +IR  R G  D+LV  ++   GLDI  
Sbjct: 250 TKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDI-- 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  +   GRA +
Sbjct: 308 SGVSHVYNYDMPQDPESYTHRVGRTGRAGK 337


>gi|282849975|ref|ZP_06259358.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
 gi|294792894|ref|ZP_06758041.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
 gi|282580412|gb|EFB85812.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
 gi|294456793|gb|EFG25156.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
          Length = 515

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++TE L +R      +H ++   +R  +IR  R G  D+LV  ++   GLDI  
Sbjct: 250 TKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDI-- 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  +   GRA +
Sbjct: 308 SGVSHVYNYDMPQDPESYTHRVGRTGRAGK 337


>gi|260102329|ref|ZP_05752566.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           helveticus DSM 20075]
 gi|260083862|gb|EEW67982.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           helveticus DSM 20075]
 gi|328463453|gb|EGF35104.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus MTCC
           5463]
          Length = 503

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++    R+ +++  R GK D+LV  ++   GLDI  
Sbjct: 253 TKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVAARGLDI-- 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 311 SGVTHVYNYD---IPQDPDSYVHRIGRTGR 337


>gi|229585164|ref|YP_002843666.1| type III restriction protein res subunit [Sulfolobus islandicus
           M.16.27]
 gi|228020214|gb|ACP55621.1| type III restriction protein res subunit [Sulfolobus islandicus
           M.16.27]
          Length = 444

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEI+   R GK++V+V  ++L EG+D+P+  +  +L     G   +    IQ +GR  
Sbjct: 357 ERIEILEKFRSGKYNVIVTSSVLDEGIDVPDASIGIVL-----GGYGTSRQFIQRLGRIL 411

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
           R   +K     + ITK      D    +R +Q
Sbjct: 412 RKKENKKARLIEIITKGTS---DYNLSKRRRQ 440


>gi|15610347|ref|NP_217727.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Rv]
 gi|15842798|ref|NP_337835.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|121639098|ref|YP_979322.1| putative ATP-dependent RNA helicase rhlE [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148663072|ref|YP_001284595.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Ra]
 gi|148824410|ref|YP_001289164.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis F11]
 gi|167968329|ref|ZP_02550606.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis H37Ra]
 gi|215405221|ref|ZP_03417402.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           02_1987]
 gi|215413087|ref|ZP_03421788.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           94_M4241A]
 gi|215432173|ref|ZP_03430092.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054]
 gi|215447511|ref|ZP_03434263.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85]
 gi|224991590|ref|YP_002646279.1| putative ATP-dependent RNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253800250|ref|YP_003033251.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           1435]
 gi|254233823|ref|ZP_04927148.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis C]
 gi|254365837|ref|ZP_04981882.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254552311|ref|ZP_05142758.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260188256|ref|ZP_05765730.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A]
 gi|260202366|ref|ZP_05769857.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46]
 gi|260206559|ref|ZP_05774050.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85]
 gi|289444785|ref|ZP_06434529.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46]
 gi|289448897|ref|ZP_06438641.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A]
 gi|289555487|ref|ZP_06444697.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           605]
 gi|289575929|ref|ZP_06456156.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85]
 gi|289747027|ref|ZP_06506405.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           02_1987]
 gi|289755331|ref|ZP_06514709.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054]
 gi|289759347|ref|ZP_06518725.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85]
 gi|294993850|ref|ZP_06799541.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis 210]
 gi|297635860|ref|ZP_06953640.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           4207]
 gi|297732857|ref|ZP_06961975.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           R506]
 gi|298526689|ref|ZP_07014098.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           94_M4241A]
 gi|306777536|ref|ZP_07415873.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu001]
 gi|306786080|ref|ZP_07424402.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu003]
 gi|306790447|ref|ZP_07428769.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu004]
 gi|306794968|ref|ZP_07433270.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu005]
 gi|306799169|ref|ZP_07437471.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu006]
 gi|306805014|ref|ZP_07441682.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu008]
 gi|306809200|ref|ZP_07445868.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu007]
 gi|306973655|ref|ZP_07486316.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu010]
 gi|313660190|ref|ZP_07817070.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           V2475]
 gi|2072674|emb|CAB08305.1| PROBABLE ATP-DEPENDENT RNA HELICASE RHLE [Mycobacterium
           tuberculosis H37Rv]
 gi|13883125|gb|AAK47649.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|121494746|emb|CAL73227.1| Probable ATP-dependent RNA helicase rhlE [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124599352|gb|EAY58456.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis C]
 gi|134151350|gb|EBA43395.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507224|gb|ABQ75033.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Ra]
 gi|148722937|gb|ABR07562.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis F11]
 gi|224774705|dbj|BAH27511.1| putative ATP-dependent RNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253321753|gb|ACT26356.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           1435]
 gi|289417704|gb|EFD14944.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46]
 gi|289421855|gb|EFD19056.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A]
 gi|289440119|gb|EFD22612.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           605]
 gi|289540360|gb|EFD44938.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85]
 gi|289687555|gb|EFD55043.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           02_1987]
 gi|289695918|gb|EFD63347.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054]
 gi|289714911|gb|EFD78923.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85]
 gi|298496483|gb|EFI31777.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214084|gb|EFO73483.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu001]
 gi|308329234|gb|EFP18085.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu003]
 gi|308333066|gb|EFP21917.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu004]
 gi|308336752|gb|EFP25603.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu005]
 gi|308340590|gb|EFP29441.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu006]
 gi|308344527|gb|EFP33378.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu007]
 gi|308348323|gb|EFP37174.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu008]
 gi|308356899|gb|EFP45750.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu010]
 gi|323718078|gb|EGB27260.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           CDC1551A]
 gi|326902560|gb|EGE49493.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis W-148]
 gi|328459985|gb|AEB05408.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           4207]
          Length = 527

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ + + L ER   V  +H ++  L R + ++  R G  DVLV  ++   G+DI
Sbjct: 279 TKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDI 336


>gi|313634128|gb|EFS00790.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL N1-067]
          Length = 526

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV  ++   GLDI  
Sbjct: 251 TKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI-- 308

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R       I +           ++ETT++R 
Sbjct: 309 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRM 365

Query: 710 KQLE 713
           + L+
Sbjct: 366 QPLQ 369


>gi|300120679|emb|CBK20233.2| unnamed protein product [Blastocystis hominis]
          Length = 536

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 6/131 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T RM + L+E L    I    +HS +   +R   +   R  +  VLV  ++   GLDIP+
Sbjct: 331 TCRMVQLLSEMLRAFQIENVPLHSLLSQNQRDAALAKFRNNRTAVLVCTDVASRGLDIPQ 390

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-AIDETTRRRE 709
             LV   D  K+ F       I  +GR AR   +   +   T+    +L AI+  T +R 
Sbjct: 391 VDLVTNYDLPKDPF-----DYIHRVGRTARAGRAGTAVSFVTLPSVGKLQAIEAMTGKRC 445

Query: 710 KQLEHNKKHNI 720
           ++ E  ++ N+
Sbjct: 446 REFEGVEEENV 456


>gi|269120813|ref|YP_003308990.1| type III restriction protein res subunit [Sebaldella termitidis
           ATCC 33386]
 gi|268614691|gb|ACZ09059.1| type III restriction protein res subunit [Sebaldella termitidis
           ATCC 33386]
          Length = 993

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 11/70 (15%)

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR---SKTSLIQTI 675
           L+R E+I   + G+ ++L  +++  EG+DIP+  L+         FLR   S T  IQ +
Sbjct: 537 LKRKEVINAFQTGEIEILCVVDIFNEGIDIPDVNLLL--------FLRPTMSSTIFIQQL 588

Query: 676 GRAARNVNSK 685
           GR  R V +K
Sbjct: 589 GRGLRKVKNK 598


>gi|153837338|ref|ZP_01990005.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           AQ3810]
 gi|149749369|gb|EDM60142.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           AQ3810]
          Length = 1153

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 125/300 (41%), Gaps = 38/300 (12%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L  + G+     +A++ +     ++++ P+  +A +L +E + F      +  VS +  +
Sbjct: 21  LGNLPGAALPLAIAELAKQHSSHSLLVVPDPQIALKLQAEIEQF-----TDQPVSLFPDW 75

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS- 291
           +   Y    D +   +  I+++I R+       L  +   + +  VS +    S   +  
Sbjct: 76  ETLPY----DNFSPHQEIISDRIARLYQ-----LPNQRGGVTIVPVSTVLQRQSPRDFLL 126

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q  + +K GD+   + L   L    Y+  D     G +   G  +++FP    D  +R+ 
Sbjct: 127 QHTLMVKTGDNFSLENLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSAD-PYRID 185

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            F ++I+ I  F P   + I +++ I++     +    PT   A++  +   + +     
Sbjct: 186 FFDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEF----PTTKEAIEDFRTRWRTQF---- 237

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                 EA+R  + I     M  T G+  +   Y + L   +      TLF+Y+PEDS L
Sbjct: 238 ------EARREPESIY----MQVTKGTWPAGIEYWQPLFFDHT----ETLFDYLPEDSQL 283



 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AEDL + + E  I V +     + LERI  + D    +F+VLV   ++  G+D+P  
Sbjct: 826 EKTAEDLQKLIPEARITVAHGQMRERELERI--MNDFYHQRFNVLVCTTIIETGIDVPTA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + +  AD  G       L Q  GR  R+
Sbjct: 884 NTIIMDRADNLGL----AQLHQLRGRVGRS 909


>gi|67524949|ref|XP_660536.1| hypothetical protein AN2932.2 [Aspergillus nidulans FGSC A4]
 gi|74657405|sp|Q5B948|IF4A_EMENI RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|40744327|gb|EAA63503.1| hypothetical protein AN2932.2 [Aspergillus nidulans FGSC A4]
          Length = 421

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 296 TRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 355

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 356 VSLVINYDLPANRENYI 372


>gi|325190800|emb|CCA25291.1| RNAdependent RNA Polymerase1 (RDR1) putative [Albugo laibachii
           Nc14]
          Length = 768

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+  I+   R G+  +L+  N+L EG+D+PEC  V   D      +    SLIQ+ GRA 
Sbjct: 524 EQRPILEKFRQGQIRLLIATNVLEEGIDVPECSFVIRFDG-----VAGVKSLIQSRGRAR 578

Query: 680 RNVNSKVIL 688
               S +IL
Sbjct: 579 CKYGSFMIL 587


>gi|316984071|gb|EFV63049.1| transcription-repair coupling factor [Neisseria meningitidis
           H44/76]
          Length = 1235

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 113/283 (39%), Gaps = 35/283 (12%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  +   A +L + +  F PH+    F+  ++    E + P  D   E+ S++ +   
Sbjct: 37  VVLTQDAEQALRLQTAWLFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ--- 92

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            ++  A        D + V   + +  +  V   +     LK G +++   L S LV   
Sbjct: 93  -IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDAG 144

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  
Sbjct: 145 YNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTISPVSE 203

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           I++     +    PT + A K  +   +  +     +  + +A               + 
Sbjct: 204 IRLLPAHEF----PTDSEAQKIFRSRFREEVDGNPNDAAVYKAV--------------SN 245

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF-VDESHV 478
           G   +   Y   L   N  E   TLF+YI ED+L   +D+ H 
Sbjct: 246 GHFGAGVEYYLPLFFENELE---TLFDYIGEDALFVSLDDVHA 285



 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 926  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 982

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 983  -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1018


>gi|313497427|gb|ADR58793.1| DEAD/H associated domain protein [Pseudomonas putida BIRD-1]
          Length = 1426

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 22/152 (14%)

Query: 550 RPTGLVD-------------PPVEIRSA-RTQVED-VYDEINLAAQQGLRILLTVLTKRM 594
           RP  +VD             PPV + +   T V   VYD +   A++    L+ V T+R+
Sbjct: 230 RPCAIVDIGHARKRDLAIEVPPVPLGAVMATDVWGLVYDRLATLAREHRTTLVFVNTRRL 289

Query: 595 AEDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           AE +T +L +R  +  V   H  +    R++  + L+ G+  VLV    L  G+DI +  
Sbjct: 290 AERITRHLSDRLGKEAVAAHHGSLSKALRLDAEQRLKSGQLQVLVATASLELGIDIGDID 349

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           LV  + +       S  + +Q +GRA   V+ 
Sbjct: 350 LVCQIASPG-----SIAAFLQRVGRAGHQVDG 376


>gi|331240812|ref|XP_003333056.1| DEAD box family helicase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309312046|gb|EFP88637.1| DEAD box family helicase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 721

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L     E  I  R + S    LER  ++ + R  KF VLV   +L EG D+P    V + 
Sbjct: 355 LANKFREAGIDARVIFSGTPPLERKILLDEFRSSKFPVLVNCAVLTEGADVPNVDCVILA 414

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
                   RS+T L Q IGR  R
Sbjct: 415 RP-----TRSRTLLTQMIGRGLR 432


>gi|308370192|ref|ZP_07420594.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu002]
 gi|308378233|ref|ZP_07481964.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu009]
 gi|308380612|ref|ZP_07490534.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu011]
 gi|308406085|ref|ZP_07669502.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu012]
 gi|308325014|gb|EFP13865.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu002]
 gi|308353157|gb|EFP42008.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu009]
 gi|308360899|gb|EFP49750.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu011]
 gi|308364543|gb|EFP53394.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu012]
          Length = 524

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ + + L ER   V  +H ++  L R + ++  R G  DVLV  ++   G+DI
Sbjct: 276 TKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDI 333


>gi|289434134|ref|YP_003464006.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170378|emb|CBH26918.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 526

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV  ++   GLDI  
Sbjct: 251 TKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI-- 308

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R       I +           ++ETT++R 
Sbjct: 309 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRM 365

Query: 710 KQLE 713
           + L+
Sbjct: 366 QPLQ 369


>gi|254673347|emb|CBA08563.1| transcription-repair coupling factor [Neisseria meningitidis
           alpha275]
          Length = 1375

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 87/208 (41%), Gaps = 17/208 (8%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  +   A +L + +  F PH+    F+  ++    E + P  D   E+ S++ +   
Sbjct: 37  VVLTQDAEQALRLQTAWLFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ--- 92

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            ++  A        D + V   + +  +  V   +     LK G +++   L S LV   
Sbjct: 93  -IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDAG 144

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  
Sbjct: 145 YNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTISPVSE 203

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELK 404
           I++     +    PT + A K  +   +
Sbjct: 204 IRLLPAHEF----PTDSEAQKIFRSRFR 227



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 1066 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1122

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 1123 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1158


>gi|221194768|ref|ZP_03567825.1| ATP-dependent DNA helicase RecG [Atopobium rimae ATCC 49626]
 gi|221185672|gb|EEE18062.1| ATP-dependent DNA helicase RecG [Atopobium rimae ATCC 49626]
          Length = 720

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +   + + E+ E++   R G  DVLV   ++  G+D+P   ++ I +AD+ G  
Sbjct: 536 DLRLGILTGRMSSAEKDEVMEKFRSGDLDVLVSTTVIEVGIDVPNATVMLIYNADRFGL- 594

Query: 666 RSKTSLIQTIGRAAR-NVNSKVILYAD 691
               +L Q  GR  R ++  KV L +D
Sbjct: 595 ---ATLHQLRGRVGRGSLPGKVFLNSD 618


>gi|187960121|ref|NP_001120807.1| nucleolar RNA helicase 2 [Danio rerio]
 gi|169642686|gb|AAI60629.1| Ddx21 protein [Danio rerio]
          Length = 759

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 15/145 (10%)

Query: 522 RPTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVY 572
           +P T++ SAT  SW  +      + Q I V+ I + T      VE   I    +Q   V 
Sbjct: 348 KPQTLLFSATCPSWVYDVAKKYMRSQFIHVDLIGKKTQKAATTVEHLAIACHWSQRASVI 407

Query: 573 -DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDLR 629
            D I + +    R ++   TK+ A   TE     +I+   + +H ++   +R   ++  R
Sbjct: 408 GDVIQVYSGSHGRTIVFCETKKEA---TELSLNTSIKQSAQSLHGDIPQKQREVTLKGFR 464

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G F+VLV  N+   GLDIPE  LV
Sbjct: 465 NGSFEVLVATNVAARGLDIPEVDLV 489


>gi|158333512|ref|YP_001514684.1| primosome assembly protein PriA [Acaryochloris marina MBIC11017]
 gi|158303753|gb|ABW25370.1| primosomal protein N' [Acaryochloris marina MBIC11017]
          Length = 829

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 9/106 (8%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+R+ E+L +   E R IR     +  K   R +++     G+ D++VG  +L +G+D+P
Sbjct: 586 TQRVMEELAKTFPELRVIRFDSDTTRRKGAHR-QLLNQFARGEADLMVGTQMLTKGIDLP 644

Query: 650 ECGLVAILDADK-------EGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +  L+ +L AD            R+  +L+Q  GRA R  +   +L
Sbjct: 645 QVQLIGVLAADSLLNIPDFRASERTFQTLLQVAGRAGRGEHPGQVL 690


>gi|90075096|dbj|BAE87228.1| unnamed protein product [Macaca fascicularis]
          Length = 258

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 133 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 192

Query: 651 CGLV 654
             LV
Sbjct: 193 VSLV 196


>gi|41469334|gb|AAS07190.1| putative ribonuclease III, 5'-partial (with alternative splicing)
           [Oryza sativa Japonica Group]
          Length = 538

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI+   R GK  +++   +L EGLD+P C LV   D        +  S IQ+ GR AR  
Sbjct: 55  EIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSA-----TVCSFIQSRGR-ARME 108

Query: 683 NSKVIL 688
           NS  +L
Sbjct: 109 NSDYLL 114


>gi|26247258|ref|NP_753298.1| transcription-repair coupling factor [Escherichia coli CFT073]
 gi|26107659|gb|AAN79858.1|AE016759_132 Transcription-repair coupling factor [Escherichia coli CFT073]
          Length = 951

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 844 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 901

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
             + I  AD  G       L Q  GR  R+    + +  D  +KS
Sbjct: 902 NTIIIERADHFGL----AQLHQLRGRVGRSXPPGICMATDAASKS 942



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 37  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 96

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 97  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 145

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 146 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 196

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 197 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQ 251

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 252 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 294

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 295 SYFPANTLL 303


>gi|71030100|ref|XP_764692.1| RNA helicase-1 [Theileria parva strain Muguga]
 gi|68351648|gb|EAN32409.1| RNA helicase-1, putative [Theileria parva]
          Length = 400

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT  + E++  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 275 TRRKVDYLTLKMQEKDFTVSSMHGDMGQKERDLIMREFRSGSTRVLITTDLLARGIDVQQ 334

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        S  + I  IGR+ R
Sbjct: 335 VSLVINYD-----LPMSPDNYIHRIGRSGR 359


>gi|307701074|ref|ZP_07638099.1| putative ATP-dependent DNA helicase RecG [Mobiluncus mulieris
           FB024-16]
 gi|307614069|gb|EFN93313.1| putative ATP-dependent DNA helicase RecG [Mobiluncus mulieris
           FB024-16]
          Length = 836

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + ++HS + +  +   I D   G   +LV   ++  G+D+PE  ++ ILDAD+ G     
Sbjct: 656 ITWVHSGLDSGAKQRAIADFVSGVAPLLVSTTVIEVGMDVPEASMMIILDADRFGL---- 711

Query: 669 TSLIQTIGRAARNVNSKVIL 688
           + L Q  GR  R V   V L
Sbjct: 712 SQLHQLRGRIGRGVRPGVCL 731


>gi|311110123|ref|ZP_07711520.1| putative prophage LambdaSa03, helicase [Lactobacillus gasseri
           MV-22]
 gi|311065277|gb|EFQ45617.1| putative prophage LambdaSa03, helicase [Lactobacillus gasseri
           MV-22]
          Length = 454

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 41/77 (53%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G + ++   + + A+++ +     NI      S+    ER +I++D + GK  VL   +
Sbjct: 214 KGRKTIVYCHSVQFAKEVAKAFRGANISAYEADSKTPEKERDKIMQDFKDGKITVLCNCD 273

Query: 641 LLREGLDIPECGLVAIL 657
           L+ EG ++P+C  V +L
Sbjct: 274 LISEGFNVPDCSCVVLL 290


>gi|255972909|ref|ZP_05423495.1| helicase [Enterococcus faecalis T1]
 gi|256618957|ref|ZP_05475803.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256762384|ref|ZP_05502964.1| helicase [Enterococcus faecalis T3]
 gi|256958868|ref|ZP_05563039.1| helicase [Enterococcus faecalis DS5]
 gi|256962038|ref|ZP_05566209.1| helicase [Enterococcus faecalis Merz96]
 gi|256965236|ref|ZP_05569407.1| helicase [Enterococcus faecalis HIP11704]
 gi|257078900|ref|ZP_05573261.1| helicase [Enterococcus faecalis JH1]
 gi|257085363|ref|ZP_05579724.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|257086858|ref|ZP_05581219.1| helicase [Enterococcus faecalis D6]
 gi|257089771|ref|ZP_05584132.1| helicase [Enterococcus faecalis CH188]
 gi|257415987|ref|ZP_05592981.1| helicase [Enterococcus faecalis AR01/DG]
 gi|257422733|ref|ZP_05599723.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294779570|ref|ZP_06744964.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300861181|ref|ZP_07107268.1| DEAD-box ATP-dependent RNA helicase CshB [Enterococcus faecalis
           TUSoD Ef11]
 gi|255963927|gb|EET96403.1| helicase [Enterococcus faecalis T1]
 gi|256598484|gb|EEU17660.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256683635|gb|EEU23330.1| helicase [Enterococcus faecalis T3]
 gi|256949364|gb|EEU65996.1| helicase [Enterococcus faecalis DS5]
 gi|256952534|gb|EEU69166.1| helicase [Enterococcus faecalis Merz96]
 gi|256955732|gb|EEU72364.1| helicase [Enterococcus faecalis HIP11704]
 gi|256986930|gb|EEU74232.1| helicase [Enterococcus faecalis JH1]
 gi|256993393|gb|EEU80695.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|256994888|gb|EEU82190.1| helicase [Enterococcus faecalis D6]
 gi|256998583|gb|EEU85103.1| helicase [Enterococcus faecalis CH188]
 gi|257157815|gb|EEU87775.1| helicase [Enterococcus faecalis ARO1/DG]
 gi|257164557|gb|EEU94517.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294453360|gb|EFG21768.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300850220|gb|EFK77970.1| DEAD-box ATP-dependent RNA helicase CshB [Enterococcus faecalis
           TUSoD Ef11]
 gi|323480612|gb|ADX80051.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62]
          Length = 449

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 82/155 (52%), Gaps = 14/155 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++T+YL ++ ++V  +H ++   ER  ++R ++   +  +V  +L   G+DI  
Sbjct: 252 TKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAARGIDIE- 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNV--NSKVILYA----DTITKSIQLAIDET 704
            G+  +++A+    L      I  +GR  RN    + + LY+    + IT+  QL +  +
Sbjct: 311 -GVSHVINAEVPHEL---DFFIHRVGRTGRNGLNGTAITLYSPADDEAITQIEQLGV--S 364

Query: 705 TRRRE-KQLEHNKKHNINPQSVKEKIMEVIDPILL 738
            + +E K  E  + ++ N ++ +EK  E +DP L+
Sbjct: 365 FKPKEIKNGEIVETYDRNRRTKREKSREELDPTLI 399


>gi|238022292|ref|ZP_04602718.1| hypothetical protein GCWU000324_02199 [Kingella oralis ATCC 51147]
 gi|237866906|gb|EEP67948.1| hypothetical protein GCWU000324_02199 [Kingella oralis ATCC 51147]
          Length = 681

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L   T+ +AE L   L + NI +  +H  +K  E+ EI+     G  +VLV   ++  G+
Sbjct: 489 LKAATETLAE-LQAALPQLNIGL--VHGRMKPAEKAEIMAQFVAGSLNVLVATTVIEVGV 545

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           D+P   L+ I  A++ G       L Q  GR  R   +   V+L+A+ + +
Sbjct: 546 DVPNASLMVIEHAERMGL----AQLHQLRGRVGRGAAASTCVLLFAEPLGQ 592


>gi|238018738|ref|ZP_04599164.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
 gi|237865209|gb|EEP66499.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
          Length = 521

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++TE L +R      +H ++   +R  +IR  R G  D+LV  ++   GLDI  
Sbjct: 250 TKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDI-- 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  +   GRA +
Sbjct: 308 SGVSHVYNYDMPQDPESYTHRVGRTGRAGK 337


>gi|119492517|ref|XP_001263624.1| eukaryotic translation initiation factor 4, putative [Neosartorya
           fischeri NRRL 181]
 gi|134034146|sp|A1D7N3|IF4A_NEOFI RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|119411784|gb|EAW21727.1| eukaryotic translation initiation factor 4, putative [Neosartorya
           fischeri NRRL 181]
          Length = 398

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 273 TRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 332

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 333 VSLVINYDLPANRENYI 349


>gi|160871992|ref|ZP_02062124.1| ATP-dependent DNA helicase RecG [Rickettsiella grylli]
 gi|159120791|gb|EDP46129.1| ATP-dependent DNA helicase RecG [Rickettsiella grylli]
          Length = 721

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 12/102 (11%)

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           L K +  DLT+      +R+  +H  + + E+  I+RD + G  D+LV  +++  G+D+ 
Sbjct: 535 LFKTLKADLTD------LRLGLIHGRLHSTEKESIMRDFKKGVIDLLVSTSIIEVGVDVS 588

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILY 689
              L+ I +A++ G       L Q  GR  R+ +    ++LY
Sbjct: 589 NANLMVIENAERLGL----AQLHQLRGRVGRSSSKSCCILLY 626


>gi|57865446|ref|YP_189608.1| helicase [Staphylococcus epidermidis RP62A]
 gi|57636104|gb|AAW52892.1| helicase, putative [Staphylococcus epidermidis RP62A]
          Length = 952

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 563 SARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  +VE +  + N     G  L+ L+ V ++  A  L   L +R I    +  +     
Sbjct: 430 ASNERVEHIIKKTNYYGYSGDVLKGLIFVSSRGEAYQLANQLSKRGISSVGLTGKDSIAY 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E I+ L+ G  + ++ ++L  EG+DIPE   V +L   K   +      IQ +GR  R
Sbjct: 490 RAETIQQLKEGSINYIITVDLFNEGIDIPEINQVVMLRPTKSSII-----FIQQLGRGLR 544

Query: 681 NVNSK 685
              +K
Sbjct: 545 KSTNK 549


>gi|315443280|ref|YP_004076159.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
 gi|315261583|gb|ADT98324.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
          Length = 561

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 11/163 (6%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  +QG  +++ V TK+  E++ E L  R      ++ ++    R   I  L+ G  D+L
Sbjct: 246 LETEQGDAMIVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTITQLKDGTIDIL 305

Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           V  ++   GLD+     V   D   D E ++      I   GRA R  +   +L+     
Sbjct: 306 VATDVAARGLDVERISHVVNFDIPHDPESYVHR----IGRTGRAGR--SGTALLFVTPRE 359

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIMEVID 734
           + +  AI+  TR++  + E     ++N + V   ++ I + +D
Sbjct: 360 RHLLGAIERVTRQKLVESELPSVDDVNEKRVAKFRDSITDALD 402


>gi|241759124|ref|ZP_04757233.1| ATP-dependent DNA helicase RecG [Neisseria flavescens SK114]
 gi|241320620|gb|EER56890.1| ATP-dependent DNA helicase RecG [Neisseria flavescens SK114]
          Length = 729

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E L   L E NI +  +H  +K  E+ E++     G+ +VLV   ++  G+D+P   L+ 
Sbjct: 545 EQLQTALPELNIGL--VHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMV 602

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I   ++ G       L Q  GR  R       V+L+A+ +++
Sbjct: 603 IEHVERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPLSE 640


>gi|255716336|ref|XP_002554449.1| KLTH0F05610p [Lachancea thermotolerans]
 gi|238935832|emb|CAR24012.1| KLTH0F05610p [Lachancea thermotolerans]
          Length = 396

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 7/100 (7%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           + D+YD I++      + ++   T+R  E+LT+ L   N  V  ++S++   +R  I+++
Sbjct: 252 LSDLYDSISVT-----QAVIFCNTRRKVEELTQRLVADNFTVSAIYSDLPQQQRDTIMKE 306

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            R G   +L+  +LL  G+D+ +  LV   D   +KE ++
Sbjct: 307 FRTGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYI 346


>gi|269123878|ref|YP_003306455.1| ATP-dependent DNA helicase RecG [Streptobacillus moniliformis DSM
           12112]
 gi|268315204|gb|ACZ01578.1| ATP-dependent DNA helicase RecG [Streptobacillus moniliformis DSM
           12112]
          Length = 689

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 4/72 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H ++K+ E+  I+ + + G+ D+LV   ++  G+++P   ++ IL++++ G     
Sbjct: 518 VGLLHGKIKSKEKENIMNEFKEGRIDILVSTTVVEVGVNVPNSSIIVILNSERFGL---- 573

Query: 669 TSLIQTIGRAAR 680
           +SL Q  GR  R
Sbjct: 574 SSLHQLRGRVGR 585


>gi|134055054|emb|CAK43695.1| unnamed protein product [Aspergillus niger]
          Length = 884

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 15/119 (12%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYL--YERNIR--VRYMHSEVKTLE------RIEIIRDLR 629
           Q   R+++ V  +  AE++T  L  YE  IR  V    S  K  E      +++I++  +
Sbjct: 450 QPATRVMIFVHFRDSAEEVTRVLKRYEPMIRPHVFVGQSSAKGSEGMGQKTQLDIVQKFK 509

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G ++ +V  ++  EGLDI E  L+   D+       S   ++Q +GR  R  + K+ L
Sbjct: 510 KGTYNTIVATSIGEEGLDIGEVDLIVCYDSSA-----SPIRMLQRMGRTGRKRSGKITL 563


>gi|22135801|gb|AAM91087.1| At5g26740 [Arabidopsis thaliana]
          Length = 748

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           S RT + D+   I + A+ G  I+ T  TKR A++++  L   +I    +H ++   +R 
Sbjct: 336 SKRTILSDL---ITVYAKGGKNIVFTQ-TKRDADEVSLAL-SNSIATEALHGDISQHQRE 390

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
             +   R GKF VLV  ++   GLDIP   LV
Sbjct: 391 RTLNAFRQGKFTVLVATDVASRGLDIPNVDLV 422


>gi|55820109|ref|YP_138551.1| transcription repair coupling factor [Streptococcus thermophilus
           LMG 18311]
 gi|55736094|gb|AAV59736.1| transcription repair coupling factor [Streptococcus thermophilus
           LMG 18311]
          Length = 1168

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 67/350 (19%), Positives = 138/350 (39%), Gaps = 48/350 (13%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF----- 225
           QL++G +GS K   MA  +        ++   +  A QL  +       + V  F     
Sbjct: 28  QLVMGFSGSSKAVAMASALSNQVPKIFIVTSTQNEAEQLVGDLSAILGEDKVYSFFADDV 87

Query: 226 -VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
             + + +  PE    +T + +E   S+N  +D           E +  +V S V     +
Sbjct: 88  SAAEFIFASPE----KTHSRLE---SLNFLMDE----------EASGVLVTSLVGTKLHL 130

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
            +   Y    + L +G   +   L   L    Y+R +  +  G F   GD ++I+    E
Sbjct: 131 PNPRVYKDSRIDLVLGKEYDLDALSRHLTHIGYQRVEQVLSPGEFSRRGDILDIYELTAE 190

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            + +R+  FG++I+ I +F   + + + N++ + I      +  R     A K +     
Sbjct: 191 -LPYRLEFFGDEIDGIRQFDSDSQKSLNNLDHVVISPADDIILTREDYQRAEKAL----- 244

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   E  +  A  L +   Y  E+L  T      ++  ++L+     +   TLF+Y
Sbjct: 245 --------ESAVSRADGLHK--AYLEEVLSVTSDGHRHKDLRKFLSLFY--DKAYTLFDY 292

Query: 465 IPEDSLLFVDESHVTIP-------QISGMYRGDFHRKATLAEYGFRLPSC 507
           +P+ + +F+D+    +        +++ +   D H+  +L+   + + S 
Sbjct: 293 LPKGTPVFIDDFQKIVDRHGRLELEVANLLTEDLHQGKSLSHLNYFVDSF 342


>gi|323976513|gb|EGB71601.1| transcription-repair coupling protein [Escherichia coli TW10509]
          Length = 1148

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
             D+ +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 -SDLPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|306818557|ref|ZP_07452280.1| possible DNA helicase RecG [Mobiluncus mulieris ATCC 35239]
 gi|304648730|gb|EFM46032.1| possible DNA helicase RecG [Mobiluncus mulieris ATCC 35239]
          Length = 819

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + ++HS + +  +   I D   G   +LV   ++  G+D+PE  ++ ILDAD+ G     
Sbjct: 639 ITWVHSGLDSGAKQRAIADFVSGVAPLLVSTTVIEVGMDVPEASMMIILDADRFGL---- 694

Query: 669 TSLIQTIGRAARNVNSKVIL 688
           + L Q  GR  R V   V L
Sbjct: 695 SQLHQLRGRIGRGVRPGVCL 714


>gi|296119987|ref|ZP_06838541.1| putative helicase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967141|gb|EFG80412.1| putative helicase [Corynebacterium ammoniagenes DSM 20306]
          Length = 1046

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAE  T +     +  R +H      ER   I DLR G    +  ++L  EG+DIPE   
Sbjct: 574 MAEQFTAF----GLPARAIHGGTSLSERNRAIADLRSGMIKAIFSVDLFNEGVDIPEVNT 629

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           + +L   +   L      IQ +GR  R  + K
Sbjct: 630 LLLLRPSQSPVL-----FIQQLGRGLRLSHGK 656


>gi|291242221|ref|XP_002741008.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like
           [Saccoglossus kowalevskii]
          Length = 681

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L   L    I V  +H++    +R  ++R  R GK  +L+   L+  
Sbjct: 419 MLVFVQSKERAKELFLELIYDGINVDVIHADRTQTQRDNVVRSFRAGKIWILICTELMGR 478

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D     LV   D     F  S  S I  IGR  R
Sbjct: 479 GIDFKGVNLVVNYD-----FPSSAVSYIHRIGRTGR 509


>gi|289619621|emb|CBI53904.1| unnamed protein product [Sordaria macrospora]
          Length = 1586

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y++++V   ++  IIR  +LG+ + L   ++  EGLDIP+C +V   D        +   
Sbjct: 513 YVNAKVNFQQQNRIIRKFKLGEINCLFATSVAEEGLDIPDCNIVIRFD-----LYDTLIQ 567

Query: 671 LIQTIGRAAR 680
            IQ+ GRA R
Sbjct: 568 YIQSRGRARR 577


>gi|284929135|ref|YP_003421657.1| primosomal protein N' [cyanobacterium UCYN-A]
 gi|284809594|gb|ADB95299.1| primosomal protein N' [cyanobacterium UCYN-A]
          Length = 839

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 7/57 (12%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           GK DVLVG  +L +GLDI    LV ++ AD   +L       R+  +L+Q  GRA R
Sbjct: 643 GKVDVLVGTQMLTKGLDIDRVTLVGVVSADGLLYLSDYYASERAFQTLMQVSGRAGR 699


>gi|298527832|ref|ZP_07015236.1| primosomal protein N' [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511484|gb|EFI35386.1| primosomal protein N' [Desulfonatronospira thiodismutans ASO3-1]
          Length = 778

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPN 202
           D+  S +Q  A+  L   +       LL G+TGSGKT     +A+    M R AI++AP 
Sbjct: 240 DFCFSPEQKEALKHLSPRLRQGFGACLLHGITGSGKTLVYLDLARQSLEMGRSAILLAPE 299

Query: 203 KILAAQLYSEFKNFFPHNAV 222
             +A QLY + + + P  A+
Sbjct: 300 IAIARQLYQQARQYLPGAAI 319


>gi|238484739|ref|XP_002373608.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           flavus NRRL3357]
 gi|220701658|gb|EED57996.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           flavus NRRL3357]
          Length = 439

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 272 TRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 331

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 332 VSLVINYDLPANRENYI 348


>gi|193212281|ref|YP_001998234.1| DEAD/DEAH box helicase domain-containing protein [Chlorobaculum
           parvum NCIB 8327]
 gi|193085758|gb|ACF11034.1| DEAD/DEAH box helicase domain protein [Chlorobaculum parvum NCIB
           8327]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 8/158 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TK    +L E L  R      ++ ++    R   I  L+ G  ++++  ++   
Sbjct: 259 IIIFVRTKTETVNLAEKLQARGYLAAALNGDMVQSARERTIEQLKDGTLNIVIATDVAAR 318

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R+   + IL+     + +  AI+
Sbjct: 319 GLDVDRISHVINYDIPTDTESYVHR----IGRTGRAGRS--GEAILFVSPRERGMLFAIE 372

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
             TR+R  ++E      +N + + +    + D I  ED
Sbjct: 373 RATRKRIDKMELPSTETVNDKRIAKFKQRITDTIAAED 410


>gi|168023701|ref|XP_001764376.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684528|gb|EDQ70930.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 689

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 11/130 (8%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           S RTQ+  V D I+     G RI++   TK  A +L   L  ++   R +H ++   +R 
Sbjct: 346 SMRTQL--VQDVISCYGSGG-RIIVFTETKNDASELAGAL--KSGTARALHGDIPQNQRE 400

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             ++  R GKF VLV  ++   GLDI +  LV   +       R   + I   GR  R  
Sbjct: 401 VTLQGFRTGKFSVLVATDVAARGLDINDVQLVIQCEPP-----RDAETYIHRSGRTGRAG 455

Query: 683 NSKV-ILYAD 691
           N+ V +L+ D
Sbjct: 456 NTGVSVLFFD 465


>gi|6320224|ref|NP_010304.1| Fal1p [Saccharomyces cerevisiae S288c]
 gi|2500524|sp|Q12099|FAL1_YEAST RecName: Full=ATP-dependent RNA helicase FAL1; AltName:
           Full=Translation initiation factor four A-like protein 1
 gi|160385737|sp|A6ZXY5|FAL1_YEAS7 RecName: Full=ATP-dependent RNA helicase FAL1; AltName:
           Full=Translation initiation factor four A-like protein 1
 gi|840874|emb|CAA89846.1| unknown [Saccharomyces cerevisiae]
 gi|1216228|emb|CAA65213.1| orf:PZC399 [Saccharomyces cerevisiae]
 gi|1431450|emb|CAA98842.1| FAL1 [Saccharomyces cerevisiae]
 gi|51830220|gb|AAU09684.1| YDR021W [Saccharomyces cerevisiae]
 gi|151942009|gb|EDN60365.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|256273263|gb|EEU08206.1| Fal1p [Saccharomyces cerevisiae JAY291]
 gi|285811043|tpg|DAA11867.1| TPA: Fal1p [Saccharomyces cerevisiae S288c]
          Length = 399

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + L++ L + N  V  MH ++K  ER +++ D R
Sbjct: 258 DIYDSLTIT-----QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  ++   G+D+ +  LV
Sbjct: 313 TGHSRVLISTDVWARGIDVQQVSLV 337


>gi|302789710|ref|XP_002976623.1| hypothetical protein SELMODRAFT_151274 [Selaginella moellendorffii]
 gi|300155661|gb|EFJ22292.1| hypothetical protein SELMODRAFT_151274 [Selaginella moellendorffii]
          Length = 595

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TKR A+ L ++L         +H +    ER + +R  R G   +LV  ++   
Sbjct: 409 MLVFVETKRGADALEDWLIRSGFPATTIHGDRTQPEREQALRCFRTGMTPILVATDVAAR 468

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           GLDIP    V   D   +         +  IGR  R  NS +
Sbjct: 469 GLDIPHVAHVINYDLPSD-----IDDYVHRIGRTGRAGNSGL 505


>gi|242241488|ref|ZP_04795933.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
 gi|242235031|gb|EES37342.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
          Length = 528

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 4/122 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+LV  ++   GLDI  
Sbjct: 268 TKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 325

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
            G+  + + D      S T  I   GRA +      + + + I       I++   RR K
Sbjct: 326 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK--EGIAVTFVNPIEMDYIRQIEDVNNRRMK 383

Query: 711 QL 712
            L
Sbjct: 384 AL 385


>gi|227875295|ref|ZP_03993437.1| possible DNA helicase RecG [Mobiluncus mulieris ATCC 35243]
 gi|227844200|gb|EEJ54367.1| possible DNA helicase RecG [Mobiluncus mulieris ATCC 35243]
          Length = 819

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + ++HS + +  +   I D   G   +LV   ++  G+D+PE  ++ ILDAD+ G     
Sbjct: 639 ITWVHSGLDSGAKQRAIADFVSGVAPLLVSTTVIEVGMDVPEASMMIILDADRFGL---- 694

Query: 669 TSLIQTIGRAARNVNSKVIL 688
           + L Q  GR  R V   V L
Sbjct: 695 SQLHQLRGRIGRGVRPGVCL 714


>gi|227518643|ref|ZP_03948692.1| ATP-dependent RNA helicase [Enterococcus faecalis TX0104]
 gi|227553173|ref|ZP_03983222.1| ATP-dependent RNA helicase [Enterococcus faecalis HH22]
 gi|227073900|gb|EEI11863.1| ATP-dependent RNA helicase [Enterococcus faecalis TX0104]
 gi|227177699|gb|EEI58671.1| ATP-dependent RNA helicase [Enterococcus faecalis HH22]
 gi|315575567|gb|EFU87758.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
 gi|315579991|gb|EFU92182.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
          Length = 452

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 83/155 (53%), Gaps = 14/155 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++T+YL ++ ++V  +H ++   ER  ++R ++   +  +V  +L   G+DI  
Sbjct: 255 TKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVI-LYA----DTITKSIQLAIDET 704
            G+  +++A+    L      I  +GR  RN +N   I LY+    + IT+  QL +  +
Sbjct: 314 -GVSHVINAEVPHEL---DFFIHRVGRTGRNGLNGTAITLYSPADDEAITQIEQLGV--S 367

Query: 705 TRRRE-KQLEHNKKHNINPQSVKEKIMEVIDPILL 738
            + +E K  E  + ++ N ++ +EK  E +DP L+
Sbjct: 368 FKPKEIKNGEIVETYDRNRRTKREKSREELDPTLI 402


>gi|195569151|ref|XP_002102574.1| GD19428 [Drosophila simulans]
 gi|194198501|gb|EDX12077.1| GD19428 [Drosophila simulans]
          Length = 1487

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ++++I+ D R G  +VLV  ++  EGLD+ E  ++   D        + T  IQ IGR  
Sbjct: 481 QQLQIMTDFRSGTSNVLVATSIGEEGLDVGEVEMIVCFDI----CSTNPTRFIQRIGRTG 536

Query: 680 RNVNSKVIL 688
           R  N +V++
Sbjct: 537 RKKNGEVVM 545


>gi|154279240|ref|XP_001540433.1| eukaryotic initiation factor 4A [Ajellomyces capsulatus NAm1]
 gi|160395527|sp|A6R3R5|IF4A_AJECN RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|150412376|gb|EDN07763.1| eukaryotic initiation factor 4A [Ajellomyces capsulatus NAm1]
          Length = 385

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 273 TRRKVDWLTDKLTARDFTVSAMHGDMEQQQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 332

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 333 VSLVINYDLPANRENYI 349


>gi|91207081|sp|Q2UPY3|IF4A_ASPOR RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|83766239|dbj|BAE56382.1| unnamed protein product [Aspergillus oryzae]
          Length = 421

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 296 TRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 355

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 356 VSLVINYDLPANRENYI 372


>gi|328868773|gb|EGG17151.1| hypothetical protein DFA_08133 [Dictyostelium fasciculatum]
          Length = 640

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           ++L+  +TK  A+ L +Y+    N R+  +H + +   RI II   +  + D+LV  ++ 
Sbjct: 438 KVLIFTMTKGGADKLADYIRSNGNARIDSIHGDKQQSRRIAIINAFKRDQLDILVATDVA 497

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             GLDI       I D           S +  IGR AR
Sbjct: 498 SRGLDI-----RTITDVINFSMPNQSESYVHRIGRTAR 530


>gi|325277315|ref|ZP_08142941.1| transcription-repair coupling factor [Pseudomonas sp. TJI-51]
 gi|324097550|gb|EGB95770.1| transcription-repair coupling factor [Pseudomonas sp. TJI-51]
          Length = 1149

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 39/208 (18%), Positives = 90/208 (43%), Gaps = 21/208 (10%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   +  R  +++  +   A +L  E + F P   V  F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +       
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELSHG----------ILVVPVTTALHRLAPTRFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G +++ +++ + L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDVGQTLDVEQMRTRLEATGYRCVDTVYEHGEFAVRGALIDLFPMG-SKLPYRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKI 379
           +F ++IE +  F P T + I  V+++++
Sbjct: 184 LFDDEIETLRTFDPETQRSIDKVDSVRL 211



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VLV   ++  G+D+P  
Sbjct: 825 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSA 882

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             + I  ADK G       L Q  GR  R+ +     YA  +T + Q    +  +R E
Sbjct: 883 NTIVIERADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPTRQKVSADAEKRLE 933


>gi|312218576|emb|CBX98521.1| hypothetical protein [Leptosphaeria maculans]
          Length = 679

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L  +      +H +    ER + +   R G+  +LV   +   G
Sbjct: 456 LIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRNGRCPILVATAVAARG 515

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 516 LDIPNVKHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 551


>gi|271969585|ref|YP_003343781.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021]
 gi|270512760|gb|ACZ91038.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021]
          Length = 697

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  + + E L ER      +H ++   +R + +R  R GK DVLV  ++   G+D+ +
Sbjct: 292 TKRACDMVVEQLKERGFAAAAVHGDLGQGQREQALRAFRNGKIDVLVATDVAARGIDVDD 351

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  ++     + + +  IGR  R   + V +
Sbjct: 352 VTHVVNYDCPQD-----EKAYVHRIGRTGRAGKTGVAV 384


>gi|257899462|ref|ZP_05679115.1| helicase [Enterococcus faecium Com15]
 gi|293573030|ref|ZP_06683972.1| cold-shock deAd box protein a [Enterococcus faecium E980]
 gi|257837374|gb|EEV62448.1| helicase [Enterococcus faecium Com15]
 gi|291606932|gb|EFF36312.1| cold-shock deAd box protein a [Enterococcus faecium E980]
          Length = 503

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  R   +H ++   +R+ ++R  + G  D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKNGHLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|254568340|ref|XP_002491280.1| Putative ATP-dependent RNA helicase of the DEAD-box family [Pichia
           pastoris GS115]
 gi|238031077|emb|CAY69000.1| Putative ATP-dependent RNA helicase of the DEAD-box family [Pichia
           pastoris GS115]
 gi|328352202|emb|CCA38601.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435]
          Length = 434

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 11/117 (9%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRM--AEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           V++ Y    LA ++     + V   R   AE L   L     RV  +HSE+  +ERI  +
Sbjct: 238 VKEAYLNAVLALEENADSTVIVFVNRTQTAELLRRTLRNLEFRVASLHSEMPQIERINSL 297

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
              + G   +L+  ++   GLDIP   LV   D  AD + +       I  +GR AR
Sbjct: 298 HRFKAGAARILIATDVASRGLDIPSVELVVNYDMPADPDDY-------IHRVGRTAR 347


>gi|298528164|ref|ZP_07015568.1| transcription-repair coupling factor [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511816|gb|EFI35718.1| transcription-repair coupling factor [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1144

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 92/207 (44%), Gaps = 25/207 (12%)

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
           ++    V+++ S +  +   +    + + L  G+     ++L  LV+  Y R  +    G
Sbjct: 107 QKGKAAVLTADSMLNYLPPPDVVRDVFLLLMTGEETNPGDILDKLVEWGYVRVFMVTSPG 166

Query: 328 TFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
                GD ++I+ P +   +  R+  FGN +E I  F P++ + IR +E   I      V
Sbjct: 167 EVSQRGDILDIYAPGYPHPL--RLEFFGNHLESIRTFEPVSQRSIRQLEECLILP----V 220

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
           +P P  +  +K  +++       L+  G +  ++ L QR+ + LE        +    Y 
Sbjct: 221 SPSPMEDHLVKQARDKADY----LKSTGEI--SRELRQRLEFKLE--------EKDPFYP 266

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFV 473
             L   +PGE    + E++PED+  F+
Sbjct: 267 AGLFYSSPGE----ISEFLPEDAHFFL 289


>gi|169883094|gb|ABZ02207.1| VASA [Trichosurus vulpecula]
          Length = 704

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 522 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 581

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ K I + D
Sbjct: 582 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGKAISFFD 625


>gi|58331980|ref|NP_001011139.1| eukaryotic translation initiation factor 4A1 [Xenopus (Silurana)
           tropicalis]
 gi|54261694|gb|AAH84468.1| eukaryotic translation initiation factor 4A, isoform 1 [Xenopus
           (Silurana) tropicalis]
 gi|89267437|emb|CAJ82477.1| eukaryotic translation initiation factor 4A, isoform 1 [Xenopus
           (Silurana) tropicalis]
          Length = 406

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|315606044|ref|ZP_07881075.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315312326|gb|EFU60412.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 1194

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 78/184 (42%), Gaps = 18/184 (9%)

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           +A++    + P +V+      A  L +   ++ P  A    +  ++    E   P+ DT 
Sbjct: 42  LARLASGAKSPLVVLTATGRDAESLTNALASWMPGVA---MLPAWETLPHERLSPQVDTM 98

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC-----IYGIGSVESYSQMIVQLKI 299
             + + +     R+ H            ++V  +       I G+  +E      V+++ 
Sbjct: 99  ARRIAVLR----RLVHPVADDASAGPISVLVVPIRAFLQPIIAGLADLEP-----VRVRA 149

Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359
           GD V+  E+   L +  Y+R D+   RG   V G  +++FP   E    RV ++G+++++
Sbjct: 150 GDVVDLTEMTERLAELGYERVDMVEARGQISVRGGILDVFPPQ-EPHPLRVELWGDEVDD 208

Query: 360 ISEF 363
           I  F
Sbjct: 209 IRAF 212


>gi|307610762|emb|CBX00373.1| ATP-dependent DNA helicase RecG [Legionella pneumophila 130b]
          Length = 660

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 6/90 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H  +K LE+   +   + G+ D+LV   ++  G+D+P   L+ I +A++ G    
Sbjct: 486 RVGLVHGRMKALEKEATMAAFKQGEIDLLVATTVIEVGVDVPNASLMIIENAERLGL--- 542

Query: 668 KTSLIQTIGRAARNVNSK--VILYADTITK 695
            + L Q  GR  R  N    ++LY   +++
Sbjct: 543 -SQLHQLRGRVGRGNNQSHCLLLYQSPLSQ 571


>gi|302788684|ref|XP_002976111.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
 gi|300156387|gb|EFJ23016.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
          Length = 597

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + A+ G  I+ T  TKR  +D+   +  R+I    +H ++   +R + +   R G+
Sbjct: 243 DLLTVYAKGGKAIVFTK-TKRDTDDVAAVM-SRSIGCEALHGDISQYQREKTLSGFRDGR 300

Query: 633 FDVLVGINLLREGLDIPECGLV 654
           F+VLV  ++   GLDIP   L+
Sbjct: 301 FNVLVATDVAARGLDIPNVDLI 322


>gi|256851309|ref|ZP_05556698.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 27-2-CHN]
 gi|260660733|ref|ZP_05861648.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 115-3-CHN]
 gi|282933246|ref|ZP_06338633.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 208-1]
 gi|297206179|ref|ZP_06923574.1| DNA helicase RecG [Lactobacillus jensenii JV-V16]
 gi|256616371|gb|EEU21559.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 27-2-CHN]
 gi|260548455|gb|EEX24430.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 115-3-CHN]
 gi|281302750|gb|EFA94965.1| ATP-dependent DNA helicase RecG [Lactobacillus jensenii 208-1]
 gi|297149305|gb|EFH29603.1| DNA helicase RecG [Lactobacillus jensenii JV-V16]
          Length = 674

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 560 EIRSARTQVE--DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T V    +Y  I    Q  L +   +L  +    + E L    +R+  + S  K
Sbjct: 282 DVGSGKTVVAVFGIYAAITAGYQAALMVPTEILANQHFGKIDELLRPFGVRIALLTSSTK 341

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           T+E+ EI R+L  G  +V++G + L++ GL   + GLV I
Sbjct: 342 TMEKREIYRELADGTLNVVIGTHALIQPGLKFKKLGLVII 381



 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 4/79 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y  + +V  +H ++   E+ +I+ +   G  ++LV  +++  G+D+P   ++ I DAD+ 
Sbjct: 494 YFNHEKVVLLHGQMNGEEKDQIMTEFSQGDINILVATSVIEVGVDVPNANMMVIFDADRF 553

Query: 663 GFLRSKTSLIQTIGRAARN 681
           G     + L Q  GR  R 
Sbjct: 554 GL----SQLHQLRGRIGRG 568


>gi|261379837|ref|ZP_05984410.1| ATP-dependent DNA helicase RecG [Neisseria subflava NJ9703]
 gi|284797526|gb|EFC52873.1| ATP-dependent DNA helicase RecG [Neisseria subflava NJ9703]
          Length = 729

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L   T+ +A+ L   L E NI +  +H  +K  E+ E++     G  +VLV   ++  G+
Sbjct: 537 LQTATETLAQ-LQAALPELNIGL--VHGRMKAAEKAEVMAQFAAGHLNVLVATTVIEVGV 593

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           D+P   L+ I  A++ G       L Q  GR  R       V+L+A+ +++
Sbjct: 594 DVPNAALMVIEHAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPLSE 640


>gi|255559765|ref|XP_002520902.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223540033|gb|EEF41611.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 535

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V  K  A +L E L   +IRV  +HS++   +R   + D R G   VL+  +++  
Sbjct: 381 VLIFVQNKERANELYEELKFDSIRVGVIHSDLLQTQREIAVDDFRAGNSWVLIATDVVAR 440

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G+  +++ D   F  S  + I  IGR+ R
Sbjct: 441 GMDFK--GVNCVINYD---FPNSAAAYIHRIGRSGR 471


>gi|159110427|ref|XP_001705473.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
 gi|157433558|gb|EDO77799.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
          Length = 900

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+ V TK   E LT  L   N+R   ++  +   +R   + +   G++ +L+  ++  
Sbjct: 300 RLLVFVATKHHCEYLTSILQANNLRATCIYGSLDQKQRTLALSEFDKGRYSILISTDVAA 359

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DIP    V   +     F  S  + +  +GR+AR
Sbjct: 360 RGIDIPNLNCVINYN-----FPSSGKNYVHRVGRSAR 391


>gi|9971884|gb|AAG10446.1|AF279106_8 predicted primosomal protein N' (replication factor Y) -
           superfamily II helicase [uncultured marine gamma
           proteobacterium EBAC31A08]
          Length = 662

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 16/145 (11%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGLDIP 649
           T+R+ E L     +  I +R  H   K +  +E I++ +      +LVG  +L +G D P
Sbjct: 424 TERVEEVLKSSFVKTPI-IRVDHDSTKKVGAMEAIVKKIHSSDAAILVGTQMLAKGHDFP 482

Query: 650 ECGLVAILDADKEGFLRSKTS--------LIQTIGRAARNVN-SKVIL---YADTITKSI 697
           +  L  IL+AD  G +  + +        LIQ  GRA RN N +KVI+   Y D I  + 
Sbjct: 483 KVTLSVILNAD-NGLISPEINALEKISQLLIQVSGRAGRNNNLAKVIIQTRYPDDINLN- 540

Query: 698 QLAIDETTRRREKQLEHNKKHNINP 722
           ++   +  +   + L  N++ N+ P
Sbjct: 541 KIKTGDYMKFASQCLSTNEQMNLPP 565


>gi|28897749|ref|NP_797354.1| transcription-repair coupling factor [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260363824|ref|ZP_05776579.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           K5030]
 gi|260876916|ref|ZP_05889271.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           AN-5034]
 gi|260897942|ref|ZP_05906438.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           Peru-466]
 gi|260903477|ref|ZP_05911872.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           AQ4037]
 gi|28805962|dbj|BAC59238.1| transcription-repair coupling factor [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085487|gb|EFO35182.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           Peru-466]
 gi|308093632|gb|EFO43327.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           AN-5034]
 gi|308110343|gb|EFO47883.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           AQ4037]
 gi|308113858|gb|EFO51398.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           K5030]
          Length = 1153

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 125/300 (41%), Gaps = 38/300 (12%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L  + G+     +A++ +     ++++ P+  +A +L +E + F      +  VS +  +
Sbjct: 21  LGNLPGAALPLAIAELAKQHSSHSLLVVPDPQIALKLQAEIEQF-----TDQPVSLFPDW 75

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS- 291
           +   Y    D +   +  I+++I R+       L  +   + +  VS +    S   +  
Sbjct: 76  ETLPY----DNFSPHQEIISDRIARLYQ-----LPNQRGGVTIVPVSTVLQRQSPRDFLL 126

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q  + +K GD+   + L   L    Y+  D     G +   G  +++FP    D  +R+ 
Sbjct: 127 QHTLMVKTGDNFSLENLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSAD-PYRID 185

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            F ++I+ I  F P   + I +++ I++     +    PT   A++  +   + +     
Sbjct: 186 FFDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEF----PTTKEAIEDFRTRWRTQF---- 237

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                 EA+R  + I     M  T G+  +   Y + L   +      TLF+Y+PEDS L
Sbjct: 238 ------EARREPESIY----MQVTKGTWPAGIEYWQPLFFDHT----ETLFDYLPEDSQL 283



 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AEDL + + E  I V +     + LERI  + D    +F+VLV   ++  G+D+P  
Sbjct: 826 EKTAEDLQKLIPEARITVAHGQMRERELERI--MNDFYHQRFNVLVCTTIIETGIDVPTA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + +  AD  G       L Q  GR  R+
Sbjct: 884 NTIIMDRADNLGL----AQLHQLRGRVGRS 909


>gi|330961341|gb|EGH61601.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 1150

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 121/307 (39%), Gaps = 55/307 (17%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +   +   
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELVHG----------VLVVPITTALHRLAPTKFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPFRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P T + I  VE++++                       L  R   L+
Sbjct: 184 LFDDEIETLRTFDPDTQRSIDKVESVRL-----------------------LPAREFPLQ 220

Query: 412 KEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           KE       R  +R   D       + L +  +   IE Y          E   TLF+Y+
Sbjct: 221 KEEVTRFKARFRERFDVDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYL 275

Query: 466 PEDSLLF 472
           P+D+ +F
Sbjct: 276 PQDTQVF 282


>gi|330447151|ref|ZP_08310801.1| ATP-dependent DNA helicase RecG [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491342|dbj|GAA05298.1| ATP-dependent DNA helicase RecG [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 693

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 8/106 (7%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A++LT  L   ++++  +H  +K  E+  ++   + G+ D+LV   ++  G+D+P   L+
Sbjct: 508 ADELTGLL--PDLKIGLVHGRMKAQEKQAVMASFKAGELDLLVATTVIEVGVDVPNASLM 565

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKSIQ 698
            I + ++ G       L Q  GR  R    +  V+LY   ++K+ Q
Sbjct: 566 VIENPERLGL----AQLHQLRGRVGRGKVASHCVLLYHAPLSKTAQ 607


>gi|319641150|ref|ZP_07995852.1| helicase [Bacteroides sp. 3_1_40A]
 gi|317387191|gb|EFV68068.1| helicase [Bacteroides sp. 3_1_40A]
          Length = 591

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 71/180 (39%), Gaps = 13/180 (7%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           T +  +Y+ +   A  G + ++  ++   A  +  Y     +    + S    LER E++
Sbjct: 233 TGIRQLYESVRRYAA-GKKGIVYAVSIAHARQIAAYYSLHGVEAVAIDSRTPALERKELV 291

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL---IQTIGRAARNV 682
            D R GK  VLV +++  EG D P+   V +         R   SL   +Q +GR  R  
Sbjct: 292 EDFRRGKISVLVNVDIFSEGFDCPDVEFVQL--------ARPTLSLAKYLQQVGRGLRKS 343

Query: 683 NSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           ++K   +  D +       +    R  E   E     N  P++  E     +   L ED+
Sbjct: 344 DNKESCVLIDNVGLHRIFGLPVRDRDWEAMFEGRMAGNAQPRTRMENNGLSVSCSLSEDS 403


>gi|300692069|ref|YP_003753064.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum PSI07]
 gi|299079129|emb|CBJ51797.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum PSI07]
          Length = 614

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I+ T  TKR A+ L E L E       +H ++    R   +  LR G+  VLV  ++   
Sbjct: 297 IVFTA-TKRDADSLAERLTETGFSAGALHGDMHQGARNRTLTALRRGQLRVLVATDVAAR 355

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           G+D+P+   V   D  K+         +  IGR  R   S + +
Sbjct: 356 GIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGIAI 394


>gi|296133301|ref|YP_003640548.1| primosomal protein N' [Thermincola sp. JR]
 gi|296031879|gb|ADG82647.1| primosomal protein N' [Thermincola potens JR]
          Length = 829

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+ D   GK D+L+G  ++ +GLD P+  LV ++ AD    L       R+   L Q  
Sbjct: 616 KILTDFAAGKADILIGTQMIAKGLDFPKVTLVGVISADTSLNLPDFRAAERTFQLLTQVA 675

Query: 676 GRAAR-NVNSKVIL 688
           GRA R     KVI+
Sbjct: 676 GRAGRAGAPGKVIV 689


>gi|259145266|emb|CAY78530.1| Fal1p [Saccharomyces cerevisiae EC1118]
 gi|323309503|gb|EGA62714.1| Fal1p [Saccharomyces cerevisiae FostersO]
 gi|323334268|gb|EGA75650.1| Fal1p [Saccharomyces cerevisiae AWRI796]
          Length = 399

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + L++ L + N  V  MH ++K  ER +++ D R
Sbjct: 258 DIYDSLTIT-----QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  ++   G+D+ +  LV
Sbjct: 313 TGHSRVLISTDVWARGIDVQQVSLV 337


>gi|284173812|ref|ZP_06387781.1| type III restriction protein res subunit [Sulfolobus solfataricus
           98/2]
 gi|261602084|gb|ACX91687.1| type III restriction protein res subunit [Sulfolobus solfataricus
           98/2]
          Length = 444

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+   R GK++V+V  ++L EG+D+P+  +  +L     G   +    IQ +GR  
Sbjct: 357 ERVEILEKFRSGKYNVIVTSSVLDEGIDVPDASVAIVL-----GGYGTSRQFIQRLGRIL 411

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
           R   +K     + +TK      D    +R +Q
Sbjct: 412 RKKENKKARLIEIVTKGTS---DYNLSKRRRQ 440


>gi|148231181|ref|NP_001086413.1| translation initiation factor eIF4A II [Xenopus laevis]
 gi|50603985|gb|AAH77641.1| LOC444845 protein [Xenopus laevis]
          Length = 406

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|46107330|ref|XP_380724.1| hypothetical protein FG00548.1 [Gibberella zeae PH-1]
          Length = 1092

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 18/154 (11%)

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           + + +R  G V  P     A T +    D    A     R+++    +  AED+   L +
Sbjct: 484 ISKWLRTDGFVGHPKLAALADTVLNHFMDN---ATNTATRVIVFSEYRDSAEDIVRMLNK 540

Query: 605 RN--IRVRYMHSE--------VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
               I+ R    +        +K  ++IE I   + G+F+VLV  ++  EGLDI +  L+
Sbjct: 541 HRPLIKARVFVGQADSKRGEGMKQAQQIEAIDRFKEGEFNVLVATSIGEEGLDIGQVDLI 600

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              D+       S   ++Q +GR  R    K++L
Sbjct: 601 VCYDSSA-----SPIRMLQRMGRTGRKQEGKIVL 629


>gi|34581455|ref|ZP_00142935.1| transcription-repair coupling factor [Rickettsia sibirica 246]
 gi|28262840|gb|EAA26344.1| transcription-repair coupling factor [Rickettsia sibirica 246]
          Length = 1122

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 23/187 (12%)

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYV 238
           FT+    + +++  I+ A N+  A QLY +   F  +  + YF SY    YD+  P A +
Sbjct: 14  FTIDNFTKNLKQDFILSASNEEEALQLYKQALFFSSNENIYYFPSYNTIPYDHTSPNANI 73

Query: 239 P--RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
              R +T I K ++ N   +++  + T +LL +              +   + +S+  ++
Sbjct: 74  LSRRAETLI-KLTTNNSNSNKLLITHTANLLNK--------------LPPKDFFSKYFLK 118

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L         EL   LV+  + R  I I  G F V G+ I+I  S  +  A+R+      
Sbjct: 119 LSPKMKFTTDELAMFLVENSFTRNAISIDVGEFAVRGEIIDIILSGPK--AYRIHFSWGY 176

Query: 357 IEEISEF 363
           IE I EF
Sbjct: 177 IESIKEF 183



 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           E++ +   GKFD+LV   ++  G+DI E   + I +AD  G     + L Q  GR  R
Sbjct: 834 EVMNEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGL----SQLYQLRGRIGR 887


>gi|332662165|ref|YP_004444953.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332330979|gb|AEE48080.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 451

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  ++G RI++   +K     L   L+ +N+ V  M S+V+  +R E +   R  K D++
Sbjct: 238 LKDRKGQRIVVFCSSKASVSSLYSKLHRKNLSVGQMSSDVEQDQREETMLAFRNSKIDII 297

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  +++  G+D+    LV   D       R     +  +GR AR
Sbjct: 298 VATDVISRGIDVDGIDLVVNYDVP-----RDPEDYVHRVGRTAR 336


>gi|328873292|gb|EGG21659.1| hypothetical protein DFA_01545 [Dictyostelium fasciculatum]
          Length = 1285

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 12/115 (10%)

Query: 605  RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            R  +   +H ++K  ER ++I D + GK  VLV  ++L  G+ I     V   D     F
Sbjct: 1053 RKYKCGAIHGDLKQHERDQVINDFKAGKMTVLVATDILGRGIHINNLRFVINYD-----F 1107

Query: 665  LRSKTSLIQTIGRAAR--NVNSKVILYAD-----TITKSIQLAIDETTRRREKQL 712
              S    I  +GR  R  N    + LY D     T  K +   ++E +++ + QL
Sbjct: 1108 PTSLEQYIHRVGRTGRQGNKGHALTLYCDIPQNQTFAKGLVRILEECSQQVDPQL 1162


>gi|229545940|ref|ZP_04434665.1| ATP-dependent RNA helicase [Enterococcus faecalis TX1322]
 gi|307291362|ref|ZP_07571246.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|229308903|gb|EEN74890.1| ATP-dependent RNA helicase [Enterococcus faecalis TX1322]
 gi|306497593|gb|EFM67126.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|315030003|gb|EFT41935.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
          Length = 452

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 83/155 (53%), Gaps = 14/155 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++T+YL ++ ++V  +H ++   ER  ++R ++   +  +V  +L   G+DI  
Sbjct: 255 TKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVI-LYA----DTITKSIQLAIDET 704
            G+  +++A+    L      I  +GR  RN +N   I LY+    + IT+  QL +  +
Sbjct: 314 -GVSHVINAEVPHEL---DFFIHRVGRTGRNGLNGTAITLYSPADDEAITQIEQLGV--S 367

Query: 705 TRRRE-KQLEHNKKHNINPQSVKEKIMEVIDPILL 738
            + +E K  E  + ++ N ++ +EK  E +DP L+
Sbjct: 368 FKPKEIKNGEIVETYDRNRRTKREKSREELDPTLI 402


>gi|169610828|ref|XP_001798832.1| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15]
 gi|160702165|gb|EAT83689.2| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15]
          Length = 1443

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 15/84 (17%)

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           E N+ +R   S++ TL++       R G+ + L   ++  EGLDIP+C LV   D     
Sbjct: 388 EENVSLR---SQILTLQK------FRRGELNCLFATSVAEEGLDIPQCNLVVRFD----- 433

Query: 664 FLRSKTSLIQTIGRAARNVNSKVI 687
             R+    +Q+ GR AR+ NSK +
Sbjct: 434 LYRTMIGYVQSRGR-ARHRNSKYL 456


>gi|189425609|ref|YP_001952786.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189421868|gb|ACD96266.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 430

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR A+ L   LY+R +    +H ++    R   + +LR GK   LV  ++   GLDI  
Sbjct: 252 TKRDADTLARDLYDRGLSAAALHGDMTQGARTRTLTNLRRGKVRFLVATDVAARGLDI-- 309

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+  +++ D     R+    +  IGR  R   + V +
Sbjct: 310 NGISHVINFD---LPRAAEDYVHRIGRTGRAGATGVAI 344


>gi|119947094|ref|YP_944774.1| ATP-dependent DNA helicase RecG [Psychromonas ingrahamii 37]
 gi|119865698|gb|ABM05175.1| ATP-dependent DNA helicase RecG [Psychromonas ingrahamii 37]
          Length = 690

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 6/95 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H  +K  E+  ++   + G+ D+LV   ++  G+D+P   L+ I + ++ G  
Sbjct: 514 DLRIGLVHGRMKANEKQSVMDAFKEGQLDLLVATTVIEVGVDVPNASLMIIENPERLGL- 572

Query: 666 RSKTSLIQTIGRAARN--VNSKVILYADTITKSIQ 698
                L Q  GR  R    +  V+LY + ++K+ Q
Sbjct: 573 ---AQLHQLRGRVGRGEVASHCVLLYKNPLSKTAQ 604


>gi|28278797|gb|AAH45237.1| LOC444845 protein [Xenopus laevis]
          Length = 404

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 279 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 338

Query: 651 CGLV 654
             LV
Sbjct: 339 VSLV 342


>gi|299066924|emb|CBJ38119.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum CMR15]
          Length = 613

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I+ T  TKR A+ L E L E       +H ++    R   +  LR G+  VLV  ++   
Sbjct: 297 IVFTA-TKRDADSLAERLTETGFSAGALHGDMHQGARNRTLTALRRGQLRVLVATDVAAR 355

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           G+D+P+   V   D  K+         +  IGR  R   S + +
Sbjct: 356 GIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGIAI 394


>gi|298735506|ref|YP_003728027.1| ATP-dependent DNA helicase RecG [Helicobacter pylori B8]
 gi|298354691|emb|CBI65563.1| ATP-dependent DNA helicase RecG [Helicobacter pylori B8]
          Length = 623

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 9/102 (8%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177
           + KI  P+ S  ++N       F     +  + DQ  AI ++   + S    + L++G  
Sbjct: 209 SAKIACPNNSERLDN-------FIASLPFKLTRDQQNAIKEIQSDLTSSIACKRLIIGDV 261

Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           G GKT   +A ++ A     ++MAP  ILA QLY+E   F P
Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|296315116|ref|ZP_06865057.1| ATP-dependent DNA helicase RecG [Neisseria polysaccharea ATCC
           43768]
 gi|296838029|gb|EFH21967.1| ATP-dependent DNA helicase RecG [Neisseria polysaccharea ATCC
           43768]
          Length = 680

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++ +   G+ +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPELNIGL--VHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|212721126|ref|NP_001132058.1| hypothetical protein LOC100193470 [Zea mays]
 gi|194693318|gb|ACF80743.1| unknown [Zea mays]
          Length = 506

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 13/130 (10%)

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           ++AR QV  + D I   +  G  I+ T  TK  A +L+  ++      R +H +V   +R
Sbjct: 358 KAARAQV--IPDIIRCYSHGGRTIIFTE-TKDSASELSGLIHGS----RALHGDVAQAQR 410

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             I+   R GKF VLV  N+   GLDI +  L+   +       R   + I   GR  R 
Sbjct: 411 EVILAGFRSGKFQVLVATNVAARGLDINDVQLIIQCEPP-----RDVEAYIHRSGRTGRA 465

Query: 682 VNSKV-ILYA 690
            N+ V ++Y 
Sbjct: 466 GNTGVAVIYC 475


>gi|117920732|ref|YP_869924.1| transcription-repair coupling factor [Shewanella sp. ANA-3]
 gi|117613064|gb|ABK48518.1| transcription-repair coupling factor [Shewanella sp. ANA-3]
          Length = 1160

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 59/305 (19%), Positives = 131/305 (42%), Gaps = 36/305 (11%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           ++Q L  + G G+  T+A ++   +   +++  +   A  +  E       + ++  +  
Sbjct: 17  QMQTLSCLAGVGQAVTLASLVRQHKGTTLIVTSDTPTALSIELELNYLLAKSVIKVRLFP 76

Query: 229 YDYYQP-EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
                P +++ P  D   ++  +++ QI +  HS           +V+  V+ +      
Sbjct: 77  DRETLPYDSFSPHQDLISQRLETLS-QITQAEHS-----------VVIVPVTTLMMRLPP 124

Query: 288 ESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           +SY S  +  LK GD  +  ++   L    Y   +     G F + G  ++IFP+ + ++
Sbjct: 125 KSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGV-NM 183

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F +++E I  F P T +    V+ +++     +    PT ++A++  ++  + R
Sbjct: 184 PLRIELFDDEVETIRHFDPETQRSSTPVDAVRLLPAKEF----PTDSSAIEGFRQRYRRR 239

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
              + K     E + + Q ++ +L           IENY          +   TLF+Y+P
Sbjct: 240 FEVIVK-----EPESVYQLVSRNL-------MPAGIENYLPLFF-----DEVATLFDYLP 282

Query: 467 EDSLL 471
           +D+ L
Sbjct: 283 KDTQL 287


>gi|62638007|gb|AAX92639.1| Vasa protein [Monopterus albus]
          Length = 450

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 278 RTMVFVETKRQADFIALFLCQEKVPTTSIHGDREQPEREKALADFRSGKCPVLVATSVAA 337

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDIP+   V   D        +    +  IGR  R  N
Sbjct: 338 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGN 372


>gi|5019620|dbj|BAA78691.1| helicase-MOI [Homo sapiens]
          Length = 1924

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 8/85 (9%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R   M +E +  E  E++R  R  + ++L+  +++ EG+DIP+C LV   D   E     
Sbjct: 492 RNNTMEAEFRKQE--EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE----- 544

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
             S +Q+ GR AR   S  I+ ADT
Sbjct: 545 YRSYVQSKGR-ARAPISNYIMLADT 568


>gi|88802028|ref|ZP_01117556.1| transcription-repair coupling factor [Polaribacter irgensii 23-P]
 gi|88782686|gb|EAR13863.1| transcription-repair coupling factor [Polaribacter irgensii 23-P]
          Length = 1114

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 106/230 (46%), Gaps = 19/230 (8%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q + I+Q+++     +    +  + GS  +F +++  +  +RP +++  +K  AA   ++
Sbjct: 12  QSSNISQIIQAFKQDKNHFQITNLVGSSLSFVISETFKTSERPYLLVLNDKEEAAYYLND 71

Query: 213 FKNFFPH-NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
            +      N + Y  SY   YQ E  V   +  +  E  +  +I+  + SA         
Sbjct: 72  LEQLLGEKNVLFYPGSYRRPYQIEE-VDNANVLLRSE--VLNRINSQKKSA--------- 119

Query: 272 CIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            I+V+    ++  + + +   +  +++ +G+++    +   L + ++KR D     G F 
Sbjct: 120 -IIVTYPDALFEKVVTKKELDKNTLKVTVGENLSLDFVNELLFEYKFKRVDFVTEPGDFS 178

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF---YPLTGQKIRNVETI 377
           V G  +++F S   D  +R+  FG++IE I  F     L+ +K++ V  I
Sbjct: 179 VRGGIVDVF-SFSNDEPYRIEFFGDEIESIRSFDVETQLSKEKLKKVSII 227


>gi|119357571|ref|YP_912215.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354920|gb|ABL65791.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeobacteroides DSM
           266]
          Length = 589

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 8/154 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           IL+ V TK M  +L E L  R      ++ ++    R   +  L+ G  ++++  ++   
Sbjct: 251 ILIFVRTKTMTLELAEKLQARGYDASALNGDMAQNMRERTVEQLKSGALNIVIATDVAAR 310

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D  +D E ++      I   GRA R+   + IL+     K++  AI+
Sbjct: 311 GLDVDRISHVINYDIPSDTESYVHR----IGRTGRAGRS--GEAILFVSPREKNMLYAIE 364

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           + TR+R + +E      IN + + +    + D I
Sbjct: 365 KATRKRIELMELPSTEIINNKRISKFKQRITDTI 398


>gi|113461266|ref|YP_719335.1| primosome assembly protein PriA [Haemophilus somnus 129PT]
 gi|112823309|gb|ABI25398.1| replication restart DNA helicase PriA [Haemophilus somnus 129PT]
          Length = 730

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF---LRSKTSL----IQTI 675
           + +RD++LGK  +L+G  +L +G   P   LVA+L+ D   F    R++  L    +Q  
Sbjct: 524 QYLRDIQLGKSQILIGTQMLAKGHHFPNVTLVALLNVDSALFSTDFRAEERLAQLYVQVA 583

Query: 676 GRAAR 680
           GRA R
Sbjct: 584 GRAGR 588


>gi|170717269|ref|YP_001784384.1| primosome assembly protein PriA [Haemophilus somnus 2336]
 gi|168825398|gb|ACA30769.1| primosomal protein N' [Haemophilus somnus 2336]
          Length = 730

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF---LRSKTSL----IQTI 675
           + +RD++LGK  +L+G  +L +G   P   LVA+L+ D   F    R++  L    +Q  
Sbjct: 524 QYLRDIQLGKSQILIGTQMLAKGHHFPNVTLVALLNVDSALFSTDFRAEERLAQLYVQVA 583

Query: 676 GRAAR 680
           GRA R
Sbjct: 584 GRAGR 588


>gi|325972264|ref|YP_004248455.1| DEAD/DEAH box helicase [Spirochaeta sp. Buddy]
 gi|324027502|gb|ADY14261.1| DEAD/DEAH box helicase domain protein [Spirochaeta sp. Buddy]
          Length = 378

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A+ + E L +  I  R +HS+     R E++RD +LG   VLV  +LL  G+DI     V
Sbjct: 257 ADRVVEKLQKNGIEARSIHSKKTQGARTELLRDFKLGYLRVLVTTDLLSRGIDIEFLPFV 316

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR 680
              +       RS  + I  IGR  R
Sbjct: 317 INYELP-----RSPINFIHRIGRTGR 337


>gi|315302253|ref|ZP_07873161.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL
           F6-596]
 gi|313629376|gb|EFR97601.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL
           F6-596]
          Length = 526

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV  ++   GLDI  
Sbjct: 251 TKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI-- 308

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R       I +           ++ETT++R 
Sbjct: 309 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRM 365

Query: 710 KQLE 713
           + L+
Sbjct: 366 QPLQ 369


>gi|307279184|ref|ZP_07560242.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
 gi|306504309|gb|EFM73521.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
          Length = 452

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 82/155 (52%), Gaps = 14/155 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++T+YL ++ ++V  +H ++   ER  ++R ++   +  +V  +L   G+DI  
Sbjct: 255 TKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNV--NSKVILYA----DTITKSIQLAIDET 704
            G+  +++A+    L      I  +GR  RN    + + LY+    + IT+  QL +  +
Sbjct: 314 -GVSHVINAEVPHEL---DFFIHRVGRTGRNGLNGTAITLYSPADDEAITQIEQLGV--S 367

Query: 705 TRRRE-KQLEHNKKHNINPQSVKEKIMEVIDPILL 738
            + +E K  E  + ++ N ++ +EK  E +DP L+
Sbjct: 368 FKPKEIKNGEIVETYDRNRRTKREKSREELDPTLI 402


>gi|302558168|ref|ZP_07310510.1| ATP-dependent DNA helicase RecG [Streptomyces griseoflavus Tu4000]
 gi|302475786|gb|EFL38879.1| ATP-dependent DNA helicase RecG [Streptomyces griseoflavus Tu4000]
          Length = 740

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 597 DLTEYLYE---RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           D+ E L     R +RV  +H  ++  ++  ++R    G+ DVLV   ++  G+++P    
Sbjct: 544 DIAEQLAAGPLRGLRVEVLHGRMQPDDKDAVMRRFAAGEADVLVATTVIEVGVNVPNATA 603

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + I+DAD+ G     + L Q  GR  R     + L
Sbjct: 604 MVIMDADRFGV----SQLHQLRGRVGRGSAPGLCL 634


>gi|238755589|ref|ZP_04616926.1| ATP-dependent DNA helicase recG [Yersinia ruckeri ATCC 29473]
 gi|238706189|gb|EEP98569.1| ATP-dependent DNA helicase recG [Yersinia ruckeri ATCC 29473]
          Length = 693

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           +RV  +H  +K  E+  +++  + G+  +LV   ++  G+D+P   L+ I + ++ G   
Sbjct: 518 VRVGLVHGRMKAAEKQSVMQSFKQGELQLLVATTVIEVGVDVPNASLMIIDNPERLGL-- 575

Query: 667 SKTSLIQTIGRAARNVNSK--VILYADTITKSIQL 699
               L Q  GR  R   +   V+LY   ++K+ Q+
Sbjct: 576 --AQLHQLRGRVGRGAVASHCVLLYKTPLSKTAQM 608


>gi|227827897|ref|YP_002829677.1| type III restriction protein res subunit [Sulfolobus islandicus
           M.14.25]
 gi|238620123|ref|YP_002914949.1| type III restriction protein res subunit [Sulfolobus islandicus
           M.16.4]
 gi|227459693|gb|ACP38379.1| type III restriction protein res subunit [Sulfolobus islandicus
           M.14.25]
 gi|238381193|gb|ACR42281.1| type III restriction protein res subunit [Sulfolobus islandicus
           M.16.4]
 gi|323474984|gb|ADX85590.1| nucleotide excision repair helicase, Xpb2 [Sulfolobus islandicus
           REY15A]
 gi|323477715|gb|ADX82953.1| nucleotide excision repair helicase, Xpb2 [Sulfolobus islandicus
           HVE10/4]
          Length = 444

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEI+   R GK++V+V  ++L EG+D+P+  +  +L     G   +    IQ +GR  
Sbjct: 357 ERIEILEKFRSGKYNVIVTSSVLDEGIDVPDASIGIVL-----GGYGTSRQFIQRLGRIL 411

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
           R   +K     + ITK      D    +R +Q
Sbjct: 412 RKKENKKARLIEIITKGTS---DYNLSKRRRQ 440


>gi|116872279|ref|YP_849060.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741157|emb|CAK20277.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 518

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV  ++   GLDI  
Sbjct: 249 TKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R       I +           ++ETT++R 
Sbjct: 307 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRM 363

Query: 710 KQLE 713
           + L+
Sbjct: 364 QPLQ 367


>gi|145222813|ref|YP_001133491.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           gilvum PYR-GCK]
 gi|145215299|gb|ABP44703.1| ATP-dependent RNA helicase CsdA [Mycobacterium gilvum PYR-GCK]
          Length = 559

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 11/163 (6%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  +QG  +++ V TK+  E++ E L  R      ++ ++    R   I  L+ G  D+L
Sbjct: 246 LETEQGDAMIVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTIAQLKDGTIDIL 305

Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           V  ++   GLD+     V   D   D E ++      I   GRA R  +   +L+     
Sbjct: 306 VATDVAARGLDVERISHVVNFDIPHDPESYVHR----IGRTGRAGR--SGTALLFVTPRE 359

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIMEVID 734
           + +  AI+  TR++  + E     ++N + V   ++ I + +D
Sbjct: 360 RHLLGAIERVTRQKLVESELPSVDDVNEKRVAKFRDSITDALD 402


>gi|333024583|ref|ZP_08452647.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
 gi|332744435|gb|EGJ74876.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
          Length = 527

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 2/111 (1%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TKR A D++E L  R      +H ++    R + +R  R GK DVLV  ++   
Sbjct: 218 VMIFCRTKRTAADISEQLQRRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAAR 277

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           G+D+   G+  +++       ++    I   GRA R+  +  ++  D I +
Sbjct: 278 GIDVE--GVTHVINYQTPEDEKTYLHRIGRTGRAGRSGTAVTLVDWDDIPR 326


>gi|323305584|gb|EGA59325.1| Fal1p [Saccharomyces cerevisiae FostersB]
          Length = 408

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + L++ L + N  V  MH ++K  ER +++ D R
Sbjct: 258 DIYDSLTIT-----QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  ++   G+D+ +  LV
Sbjct: 313 TGHSRVLISTDVWXRGIDVQQVSLV 337


>gi|317181205|dbj|BAJ58991.1| DNA recombinase [Helicobacter pylori F32]
          Length = 621

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFT-MAKVIE 190
           N+S+ +  F     +  + DQ  AI ++   + S    + L++G  G GKT   +A ++ 
Sbjct: 216 NNSERLKAFITSLPFKLTNDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVL 275

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           A     ++MAP  ILA QLY+E   F P
Sbjct: 276 AYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|303228490|ref|ZP_07315321.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516848|gb|EFL58759.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 523

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 8/120 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++TE L +R      +H ++   +R  +IR  R G  D+LV  ++   GLDI  
Sbjct: 250 TKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDI-- 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ--LAIDETTRRR 708
            G+  + + D      S T  +   GRA +   +    Y   I + I+   AI+  T+R+
Sbjct: 308 SGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEA----YTFVIPREIEHLHAIERLTKRK 363


>gi|148233734|ref|NP_001085314.1| eukaryotic translation initiation factor 4A1 [Xenopus laevis]
 gi|46329822|gb|AAH68800.1| LOC443739 protein [Xenopus laevis]
 gi|76780122|gb|AAI06280.1| LOC443739 protein [Xenopus laevis]
          Length = 406

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|15897401|ref|NP_342006.1| DNA repair protein rad25 [Sulfolobus solfataricus P2]
 gi|227830619|ref|YP_002832399.1| type III restriction protein res subunit [Sulfolobus islandicus
           L.S.2.15]
 gi|229579502|ref|YP_002837900.1| type III restriction protein res subunit [Sulfolobus islandicus
           Y.G.57.14]
 gi|229581810|ref|YP_002840209.1| type III restriction protein res subunit [Sulfolobus islandicus
           Y.N.15.51]
 gi|284998146|ref|YP_003419913.1| type III restriction enzyme, res subunit [Sulfolobus islandicus
           L.D.8.5]
 gi|13813630|gb|AAK40796.1| DNA repair protein rad25 [Sulfolobus solfataricus P2]
 gi|227457067|gb|ACP35754.1| type III restriction protein res subunit [Sulfolobus islandicus
           L.S.2.15]
 gi|228010216|gb|ACP45978.1| type III restriction protein res subunit [Sulfolobus islandicus
           Y.G.57.14]
 gi|228012526|gb|ACP48287.1| type III restriction protein res subunit [Sulfolobus islandicus
           Y.N.15.51]
 gi|284446041|gb|ADB87543.1| type III restriction enzyme, res subunit [Sulfolobus islandicus
           L.D.8.5]
          Length = 444

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEI+   R GK++V+V  ++L EG+D+P+  +  +L     G   +    IQ +GR  
Sbjct: 357 ERIEILEKFRSGKYNVIVTSSVLDEGIDVPDASIGIVL-----GGYGTSRQFIQRLGRIL 411

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
           R   +K     + ITK      D    +R +Q
Sbjct: 412 RKKENKKARLIEIITKGTS---DYNLSKRRRQ 440


>gi|24379088|ref|NP_721043.1| ATP-dependent RNA helicase [Streptococcus mutans UA159]
 gi|24376988|gb|AAN58349.1|AE014905_2 putative ATP-dependent RNA helicase, DEAD-box family [Streptococcus
           mutans UA159]
          Length = 517

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD +    D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|323349512|gb|EGA83736.1| Fal1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 399

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + L++ L + N  V  MH ++K  ER +++ D R
Sbjct: 258 DIYDSLTIT-----QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  ++   G+D+ +  LV
Sbjct: 313 TGHSRVLISTDVWARGIDVQQVSLV 337


>gi|260913046|ref|ZP_05919528.1| DNA helicase RecG [Pasteurella dagmatis ATCC 43325]
 gi|260632633|gb|EEX50802.1| DNA helicase RecG [Pasteurella dagmatis ATCC 43325]
          Length = 693

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL + L   ++R+  +H  +K  E+ EI+   +  + D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLRKIL--PHLRIGLVHGRMKPAEKQEIMTAFKSAEIDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I +A++ G     + L Q  GR  R   +   V++Y   + K
Sbjct: 567 IENAERLGL----SQLHQLRGRVGRGTTASFCVLMYKPPLGK 604


>gi|239637375|ref|ZP_04678357.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
 gi|239596975|gb|EEQ79490.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
          Length = 509

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 336


>gi|229550132|ref|ZP_04438857.1| ATP-dependent RNA helicase [Enterococcus faecalis ATCC 29200]
 gi|293383060|ref|ZP_06628978.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|293387787|ref|ZP_06632331.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|307271133|ref|ZP_07552416.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|307273339|ref|ZP_07554584.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|307277485|ref|ZP_07558577.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|307288127|ref|ZP_07568137.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|312900642|ref|ZP_07759939.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|312904121|ref|ZP_07763289.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|312907351|ref|ZP_07766342.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|312909967|ref|ZP_07768815.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|312952381|ref|ZP_07771256.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|229304718|gb|EEN70714.1| ATP-dependent RNA helicase [Enterococcus faecalis ATCC 29200]
 gi|291079725|gb|EFE17089.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|291082857|gb|EFE19820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|306500863|gb|EFM70181.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|306505750|gb|EFM74928.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|306509866|gb|EFM78891.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|306512631|gb|EFM81280.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|310626379|gb|EFQ09662.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|310629765|gb|EFQ13048.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|310632597|gb|EFQ15880.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|311289925|gb|EFQ68481.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|311292123|gb|EFQ70679.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|315027381|gb|EFT39313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
 gi|315033779|gb|EFT45711.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
 gi|315036865|gb|EFT48797.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
 gi|315145689|gb|EFT89705.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
 gi|315147874|gb|EFT91890.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
 gi|315150649|gb|EFT94665.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
 gi|315153344|gb|EFT97360.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
 gi|315155879|gb|EFT99895.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
 gi|315157954|gb|EFU01971.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
 gi|315160224|gb|EFU04241.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
 gi|315164257|gb|EFU08274.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
 gi|315166649|gb|EFU10666.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
 gi|315170067|gb|EFU14084.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
 gi|315174457|gb|EFU18474.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
 gi|315578466|gb|EFU90657.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
 gi|327535018|gb|AEA93852.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           faecalis OG1RF]
          Length = 452

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 82/155 (52%), Gaps = 14/155 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++T+YL ++ ++V  +H ++   ER  ++R ++   +  +V  +L   G+DI  
Sbjct: 255 TKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNV--NSKVILYA----DTITKSIQLAIDET 704
            G+  +++A+    L      I  +GR  RN    + + LY+    + IT+  QL +  +
Sbjct: 314 -GVSHVINAEVPHEL---DFFIHRVGRTGRNGLNGTAITLYSPADDEAITQIEQLGV--S 367

Query: 705 TRRRE-KQLEHNKKHNINPQSVKEKIMEVIDPILL 738
            + +E K  E  + ++ N ++ +EK  E +DP L+
Sbjct: 368 FKPKEIKNGEIVETYDRNRRTKREKSREELDPTLI 402


>gi|256827018|ref|YP_003150977.1| DNA/RNA helicase, superfamily II [Cryptobacterium curtum DSM 15641]
 gi|256583161|gb|ACU94295.1| DNA/RNA helicase, superfamily II [Cryptobacterium curtum DSM 15641]
          Length = 551

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 38/82 (46%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  + G RI++   T+   +     L +    V  +HS+    +R   I  L  GK D+L
Sbjct: 238 LNERGGTRIIVFARTRHRVDTCVRKLRKAGFAVEPIHSDRSQNQRKRAIEALEAGKCDIL 297

Query: 637 VGINLLREGLDIPECGLVAILD 658
           V  ++L  G+DIP    V  LD
Sbjct: 298 VATDVLARGIDIPNVNYVVNLD 319


>gi|225680931|gb|EEH19215.1| ATP-dependent RNA helicase eIF4A [Paracoccidioides brasiliensis
           Pb03]
          Length = 375

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 250 TRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 309

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 310 VSLVINYDLPANRENYI 326


>gi|254167251|ref|ZP_04874103.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
           boonei T469]
 gi|197623514|gb|EDY36077.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
           boonei T469]
          Length = 439

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 23/177 (12%)

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL----- 598
           ++E++IR +G      E   AR         I   ++   R+L  +L     E +     
Sbjct: 274 MLERLIRMSGRSKEAREALLARIYAR----RIAFGSRAKYRVLGDLLMLHRGEKIIIFTE 329

Query: 599 -TEYLYERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
             E +YE + R  V ++  E K  ER  ++   R G + V+    +L EG+D+P+  +  
Sbjct: 330 ENEQVYEISKRFLVPFITHETKKKEREHVLNSFRRGDYTVIATSKVLNEGVDVPDASVGI 389

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSIQLAIDETTRRREK 710
           +L         SK   +Q +GR  R  + + + +LY + I++++++    T RRR K
Sbjct: 390 VLGGSG-----SKREYVQRLGRILRKSSKDKRAVLY-EIISRTVEIG---TARRRRK 437


>gi|257062106|ref|YP_003139994.1| transcription-repair coupling factor [Cyanothece sp. PCC 8802]
 gi|256592272|gb|ACV03159.1| transcription-repair coupling factor [Cyanothece sp. PCC 8802]
          Length = 1158

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L+IG +   +E+  +LV+  Y+R  +    G +   GD ++IFP   E +  R+  FG++
Sbjct: 143 LQIGITKTSQEIDETLVRLGYERVALVETEGQWSRRGDIVDIFPVSSE-LPIRLEWFGDE 201

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           +E+I E  P T + +  +E + +   S      P +   +K     L+  L + EKEG
Sbjct: 202 LEKIRELDPATQRSLDKLEQVILTPTSF----NPIIANTLKNKNINLQNYLSDEEKEG 255


>gi|189242416|ref|XP_001811064.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
           [Tribolium castaneum]
          Length = 1142

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I++ V TK+  +D+T+ +         +H +    ER  ++ + R GK  +LV  ++  
Sbjct: 799 KIIVFVETKKKVDDITKCIRREGYAAISIHGDKSQPERDYVLSEFRTGKSSILVATDVAA 858

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     +  S    +  IGR  R
Sbjct: 859 RGLDVEDVKYVINFD-----YPNSSEDYVHRIGRTGR 890


>gi|29375944|ref|NP_815098.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis V583]
 gi|257419189|ref|ZP_05596183.1| helicase [Enterococcus faecalis T11]
 gi|29343406|gb|AAO81168.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis V583]
 gi|257161017|gb|EEU90977.1| helicase [Enterococcus faecalis T11]
          Length = 449

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 82/155 (52%), Gaps = 14/155 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++T+YL ++ ++V  +H ++   ER  ++R ++   +  +V  +L   G+DI  
Sbjct: 252 TKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAARGIDIE- 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNV--NSKVILYA----DTITKSIQLAIDET 704
            G+  +++A+    L      I  +GR  RN    + + LY+    + IT+  QL +  +
Sbjct: 311 -GVSHVINAEVPHEL---DFFIHRVGRTGRNGLNGTAITLYSPADDEAITQIEQLGV--S 364

Query: 705 TRRRE-KQLEHNKKHNINPQSVKEKIMEVIDPILL 738
            + +E K  E  + ++ N ++ +EK  E +DP L+
Sbjct: 365 FKPKEIKNGEIVETYDRNRRTKREKSREELDPTLI 399


>gi|88856286|ref|ZP_01130945.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
 gi|88814370|gb|EAR24233.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
          Length = 638

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R      +  +V   +R   +  L+ GK D+LV  ++   
Sbjct: 259 MIVFVRTKSETENLAEKLRARGYSAAAISGDVAQAQRERTVNQLKSGKLDILVATDVAAR 318

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  +   I +     + +  AI+
Sbjct: 319 GLDVDRISHVVNFDIPVDTESYVHR----IGRTGRAGR--SGSAISFVTPRERRLLTAIE 372

Query: 703 ETTRRREKQLEHNKKHNIN 721
           + TR+   Q++     ++N
Sbjct: 373 KATRQPLTQMQLPSVEDVN 391


>gi|330684829|gb|EGG96522.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU121]
          Length = 509

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 336


>gi|328768074|gb|EGF78121.1| hypothetical protein BATDEDRAFT_33571 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 404

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  + LTE++  R+  V  +H E++  ER  I+ + R G   +L+  +LL  G+D+ +
Sbjct: 279 TKRKVDWLTEHMRARDFTVSALHGEMEQKERQTIMGEFRSGSSRILITTDLLARGIDVQQ 338

Query: 651 CGLV 654
             LV
Sbjct: 339 VSLV 342


>gi|325188274|emb|CCA22814.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 414

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE +  ++  V  MH ++   +R  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 289 TRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRVLITTDLLARGIDVQQ 348

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        ++ + I  IGR+ R
Sbjct: 349 VSLVVNYD-----LPLNRENYIHRIGRSGR 373


>gi|302877849|ref|YP_003846413.1| transcription-repair coupling factor [Gallionella capsiferriformans
           ES-2]
 gi|302580638|gb|ADL54649.1| transcription-repair coupling factor [Gallionella capsiferriformans
           ES-2]
          Length = 1134

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 13/120 (10%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAE LTE L E   R+R  H ++   E   ++RD    +F++L+   ++  G+D+P    
Sbjct: 817 MAEKLTELLPE--ARIRTAHGQMGERELEAVMRDFYQQRFNILLCTTIIETGIDVPTANT 874

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           + +  AD+ G       L Q  GR  R+ +     YA  +  S    +D  T + +K+LE
Sbjct: 875 IIMNRADRFGL----AQLHQLRGRVGRSHHQA---YAYLLVDS----LDGLTVQAKKRLE 923


>gi|217031874|ref|ZP_03437377.1| hypothetical protein HPB128_199g82 [Helicobacter pylori B128]
 gi|216946526|gb|EEC25128.1| hypothetical protein HPB128_199g82 [Helicobacter pylori B128]
          Length = 613

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 9/102 (8%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177
           + KI  P+ S  ++N       F     +  + DQ  AI ++   + S    + L++G  
Sbjct: 199 SAKIACPNNSERLDN-------FIASLPFKLTRDQQNAIKEIQSDLTSSIACKRLIIGDV 251

Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           G GKT   +A ++ A     ++MAP  ILA QLY+E   F P
Sbjct: 252 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYNEALKFLP 293


>gi|115398049|ref|XP_001214616.1| ATP-dependent RNA helicase ded1 [Aspergillus terreus NIH2624]
 gi|121737954|sp|Q0CLJ6|DED1_ASPTN RecName: Full=ATP-dependent RNA helicase ded1
 gi|114192807|gb|EAU34507.1| ATP-dependent RNA helicase ded1 [Aspergillus terreus NIH2624]
          Length = 674

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D ++     GL  L+ V TKRMA+ L+++L  +      +H +    ER   +   R 
Sbjct: 438 LLDILHTHGTSGL-TLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRS 496

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           G+  +LV   +   GLDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 497 GRCPILVATAVAASGLDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 547


>gi|122227760|sp|Q0ILZ4|RH9_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 9
          Length = 628

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G + ++   TKR A+ L+ Y   R+ + + +H ++   +R   ++  R G F++L+  +
Sbjct: 341 KGGKCIVFTQTKRDADRLS-YTMGRSFQCQALHGDITQAQRERTLKGFREGHFNILIATD 399

Query: 641 LLREGLDIPECGLV 654
           +   GLDIP   LV
Sbjct: 400 VAARGLDIPNVDLV 413


>gi|2370591|emb|CAA73167.1| translation initiation factor eIF4A I [Xenopus laevis]
          Length = 406

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|47221681|emb|CAG10153.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 359

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+R AE LT+ L  ++  V  +HSE+   ER   +++ R G   V +  +LL  G
Sbjct: 229 VIFVNTRRKAEWLTQELTSKDFTVSVLHSEMGQSERDTTMKEFRSGSSRVFITTDLLARG 288

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +++    LV   D        S  + I  IGR+ R
Sbjct: 289 INVQHASLVINFDLST-----SLENYIHRIGRSGR 318


>gi|325117073|emb|CBZ52625.1| putative ATP-dependent RNA helicase [Neospora caninum Liverpool]
          Length = 1056

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 10/137 (7%)

Query: 544  IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
            +V+QI++    V+ P++  + R  +E+ +     +  +  + ++ V +KR        + 
Sbjct: 889  LVKQIVK---QVEEPLKAAALRADLEEFF-----STSRDSQAIVFVRSKRAIHPTAHTIR 940

Query: 604  ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
               I    +       ER ++ R+ R G+F VLV  ++   GLD P  GLV  +D  +E 
Sbjct: 941  LAGIPAEVLTGNRTQPERQQVFRNFREGRFPVLVATSIAARGLDFPNVGLVINVDMPQE- 999

Query: 664  FLRSKTSLIQTIGRAAR 680
             +      I   GRA R
Sbjct: 1000 -MEHYVHRIGRTGRAGR 1015


>gi|311104675|ref|YP_003977528.1| transcription-repair coupling factor [Achromobacter xylosoxidans
           A8]
 gi|310759364|gb|ADP14813.1| transcription-repair coupling factor [Achromobacter xylosoxidans
           A8]
          Length = 1154

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 73/190 (38%), Gaps = 21/190 (11%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQ 233
           GSG  + +A +      P +++    + A +L  E + F P   V     +    YD + 
Sbjct: 37  GSGDAWLLADLARQASAPLVILTAEPVEAQRLAEEIQLFAPDLRVRQLPDWETLPYDAFS 96

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
           P             +  I+E++  +    T+S+    D + V   + +Y +      +  
Sbjct: 97  PH------------QDLISERLHTLHSLMTKSV----DVLTVPVTTALYRLAPPSFLAAY 140

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
               K  D + +  L + L    Y         G F + G  I++FP     V +R+ +F
Sbjct: 141 TFSFKQKDKLNEAALRAQLTLANYNHVTQVTAPGEFCLRGGLIDLFPMG-SVVPYRLDLF 199

Query: 354 GNDIEEISEF 363
            ++IE I  F
Sbjct: 200 DDEIETIRSF 209


>gi|261838796|gb|ACX98562.1| ATP-dependent DNA helicase [Helicobacter pylori 51]
          Length = 621

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFT-MAKVIE 190
           N+S+ +  F     +  + DQ  AI ++   + S    + L++G  G GKT   +A ++ 
Sbjct: 216 NNSERLKAFITSLPFKLTNDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVL 275

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           A     ++MAP  ILA QLY+E   F P
Sbjct: 276 AYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|190405005|gb|EDV08272.1| eukaryotic initiation factor 4A-12 [Saccharomyces cerevisiae
           RM11-1a]
          Length = 399

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + L++ L + N  V  MH ++K  ER +++ D R
Sbjct: 258 DIYDSLTIT-----QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  ++   G+D+ +  LV
Sbjct: 313 TGHSRVLISTDVWARGIDVQQVSLV 337


>gi|162453584|ref|YP_001615951.1| hypothetical protein sce5308 [Sorangium cellulosum 'So ce 56']
 gi|161164166|emb|CAN95471.1| deaD3 [Sorangium cellulosum 'So ce 56']
          Length = 632

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G R L+ V T+  A +L + L    +  R +  +++  ER   +   R G    LV  ++
Sbjct: 257 GERTLVFVRTREGAAELADKLTALGLPARALSGDLEQRERTRTLDAFRSGAITTLVATDV 316

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              G+D+PE G V  + AD  G     T      GRA R   + V+L A
Sbjct: 317 AARGIDVPEVGRV--IHADPPGDPEIFTHRSGRTGRAGRK-GTSVLLVA 362


>gi|159029663|emb|CAO87741.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 500

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 21/155 (13%)

Query: 574 EINLAAQQGLRILLTVLTKRMAE--------DLTEYLYERNIRVRYMHSEVKTLERIEII 625
           EI+   Q  LR+L  ++ +   E        + T Y    +  +  +  +    ER EI+
Sbjct: 314 EISSGTQGKLRVLAELICEHYPEAILIFTNDNATVYRISESFLIPAITHQTPVKERHEIL 373

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV--- 682
              R G++ +LV  ++L EG+D+PE  +  IL         S    IQ +GR  R     
Sbjct: 374 TRFRQGEYKILVTSHVLNEGVDVPEARIAIILSGTG-----STREYIQRLGRVLRKGQQE 428

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           + + ILY      + +   ++T++RR    EH  K
Sbjct: 429 DKRAILYEVIAENTTE---EKTSQRRRG--EHKNK 458


>gi|169603339|ref|XP_001795091.1| hypothetical protein SNOG_04678 [Phaeosphaeria nodorum SN15]
 gi|118593422|sp|Q0UU86|IF4A_PHANO RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|111067318|gb|EAT88438.1| hypothetical protein SNOG_04678 [Phaeosphaeria nodorum SN15]
          Length = 396

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH ++   +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 271 TRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 330

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 331 VSLVINYDLPANRENYI 347


>gi|91206542|sp|Q4PHU9|DBP2_USTMA RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 552

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 6/104 (5%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           ++A+ G  I+ T  TKR+A+DLT++L +       +H + +  ER  ++ + + G+  ++
Sbjct: 372 ISAENGKVIIFTS-TKRVADDLTKFLRQDGWPALAIHGDKQQQERDWVLAEFKSGRSPIM 430

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V   +   GLD+ +   V   D     F  +    +  IGR  R
Sbjct: 431 VATAVASRGLDVKDISYVINYD-----FPTNTEDYVHQIGRTGR 469


>gi|86609671|ref|YP_478433.1| primosome assembly protein PriA [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558213|gb|ABD03170.1| primosomal protein N' [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 801

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 11/68 (16%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL---------RSKTSLIQ 673
           +++   R GK  VLVG  +L +GLDIP+  LV ++ AD  G L         RS   L Q
Sbjct: 596 DLLEQFRSGKAQVLVGTQMLTKGLDIPQVTLVGVMAAD--GLLHQADYRAGERSFQLLTQ 653

Query: 674 TIGRAARN 681
             GR+ R 
Sbjct: 654 VAGRSGRG 661


>gi|17545671|ref|NP_519073.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
 gi|17427964|emb|CAD14654.1| putative atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 608

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I+ T  TKR A+ L E L E       +H ++    R   +  LR G+  VLV  ++   
Sbjct: 297 IVFTA-TKRDADSLAERLTETGFSAGALHGDMHQGARNRTLTALRRGQLRVLVATDVAAR 355

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           G+D+P+   V   D  K+         +  IGR  R   S + +
Sbjct: 356 GIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGIAI 394


>gi|226223484|ref|YP_002757591.1| ATP-dependent RNA helicase [Listeria monocytogenes Clip81459]
 gi|225875946|emb|CAS04650.1| Putative ATP-dependent RNA helicase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328467139|gb|EGF38229.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 1816]
 gi|328475471|gb|EGF46234.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 220]
          Length = 517

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV  ++   GLDI  
Sbjct: 249 TKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R       I +           ++ETT++R 
Sbjct: 307 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRM 363

Query: 710 KQLE 713
           + L+
Sbjct: 364 QPLQ 367


>gi|196014693|ref|XP_002117205.1| DEAD box ATP-dependent RNA helicase [Trichoplax adhaerens]
 gi|190580170|gb|EDV20255.1| DEAD box ATP-dependent RNA helicase [Trichoplax adhaerens]
          Length = 401

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 260 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFR 314

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 315 SGASRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 360


>gi|158706448|sp|Q0UI93|DCL1_PHANO RecName: Full=Dicer-like protein 1; Includes: RecName:
           Full=Endoribonuclease DCL1; Includes: RecName:
           Full=ATP-dependent helicase DCL1
          Length = 1522

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 15/84 (17%)

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           E N+ +R   S++ TL++       R G+ + L   ++  EGLDIP+C LV   D     
Sbjct: 460 EENVSLR---SQILTLQK------FRRGELNCLFATSVAEEGLDIPQCNLVVRFD----- 505

Query: 664 FLRSKTSLIQTIGRAARNVNSKVI 687
             R+    +Q+ GR AR+ NSK +
Sbjct: 506 LYRTMIGYVQSRGR-ARHRNSKYL 528


>gi|149376197|ref|ZP_01893962.1| ATP-dependent DNA helicase RecG [Marinobacter algicola DG893]
 gi|149359602|gb|EDM48061.1| ATP-dependent DNA helicase RecG [Marinobacter algicola DG893]
          Length = 691

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 16/133 (12%)

Query: 569 EDVYDEINLAAQQGLRILLT--------VLTKRMAEDLTEYLYER--NIRVRYMHSEVKT 618
           +DV D +  A ++G +             L  + AE   + L ER  +++V  +H  +K 
Sbjct: 469 DDVTDRVRKACKEGRQAYWVCTLIEESEALQCQAAEGTAQELAERLPDLKVGLVHGRLKA 528

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            E+  ++   + G+ D+LV   ++  G+D+P   L+ I + ++ G       L Q  GR 
Sbjct: 529 AEKAAVMEQFKNGELDLLVATTVIEVGVDVPNASLIIIENPERLGL----AQLHQLRGRV 584

Query: 679 ARNVNSK--VILY 689
            R   +   V++Y
Sbjct: 585 GRGEEASFCVLMY 597


>gi|27468957|ref|NP_765594.1| hypothetical protein SE2039 [Staphylococcus epidermidis ATCC 12228]
 gi|27316505|gb|AAO05680.1|AE016750_285 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
          Length = 855

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 563 SARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  +VE +  + N     G  L+ L+ V ++  A  L   L +R I    +  +     
Sbjct: 333 ASNERVEHIIKKTNYYGYSGDVLKGLIFVSSRGEAYQLANQLSKRGISSVGLTGKDSIAY 392

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E I+ L+ G  + ++ ++L  EG+DIPE   V +L   K   +      IQ +GR  R
Sbjct: 393 RAETIQQLKEGSINYIITVDLFNEGIDIPEINQVVMLRPTKSSII-----FIQQLGRGLR 447

Query: 681 NVNSK 685
              +K
Sbjct: 448 KSTNK 452


>gi|16799933|ref|NP_470201.1| hypothetical protein lin0859 [Listeria innocua Clip11262]
 gi|217965039|ref|YP_002350717.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Listeria monocytogenes HCC23]
 gi|290892943|ref|ZP_06555933.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
 gi|16413310|emb|CAC96091.1| lin0859 [Listeria innocua Clip11262]
 gi|217334309|gb|ACK40103.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Listeria monocytogenes HCC23]
 gi|290557519|gb|EFD91043.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
          Length = 516

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV  ++   GLDI  
Sbjct: 249 TKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R       I +           ++ETT++R 
Sbjct: 307 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRM 363

Query: 710 KQLE 713
           + L+
Sbjct: 364 QPLQ 367


>gi|254228105|ref|ZP_04921535.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262395917|ref|YP_003287770.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
 gi|151939601|gb|EDN58429.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262339511|gb|ACY53305.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
          Length = 522

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVYD-EINLAAQQGLR---------ILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y  ++   A   ++         +L+   TK  A 
Sbjct: 198 GLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQVLVFTKTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L ++L E+N+    +H       R + + D + G+  VLV  ++   G+DIP+
Sbjct: 258 RLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAARGIDIPQ 311


>gi|294884821|gb|ADF47423.1| eukaryotic initiation factor-4A3 [Dugesia japonica]
          Length = 399

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      ++++   TKR  E LTE + E N  V  +H ++   ER EI R  R
Sbjct: 257 DIYDTVTVT-----QVVIFCNTKRKVEWLTEKMRENNFPVSSIHGDMPQGERDEITRQFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +  VL+  ++   G+D+    LV   D        ++   I  IGR+ R
Sbjct: 312 ALETRVLITTDVWARGIDVQHVSLVINYD-----LPNNRELYIHRIGRSGR 357


>gi|302873918|ref|YP_003842551.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689833|ref|ZP_07632279.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302576775|gb|ADL50787.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
           743B]
          Length = 374

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR A+DL   LY+R      +HS++   +R  I++  R   F  L+  ++   GLDI  
Sbjct: 248 TKRRADDLEVGLYQRGYNCAKLHSDIPQSKRERIMKAFRNADFQYLIATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  I + D      S  S I  IGR  R
Sbjct: 306 SGVTHIYNYD---IPESVESYIHRIGRTGR 332


>gi|255714715|ref|XP_002553639.1| KLTH0E03630p [Lachancea thermotolerans]
 gi|238935021|emb|CAR23202.1| KLTH0E03630p [Lachancea thermotolerans]
          Length = 672

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E L     +  +  +Y+  + +  ER  I+ D + G+ +VL+   +  EG DIP    + 
Sbjct: 289 ETLHSLFVKHGVNAQYVTGKTRQSERDAIVEDFKRGRIEVLMNCGVFTEGTDIPNVDSIL 348

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +    K     S++ L+Q IGR  R  +SK
Sbjct: 349 LCRPTK-----SRSLLVQMIGRGLRLHHSK 373


>gi|226292640|gb|EEH48060.1| ATP-dependent RNA helicase eIF4A [Paracoccidioides brasiliensis
           Pb18]
          Length = 366

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 241 TRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 300

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 301 VSLVINYDLPANRENYI 317


>gi|224086197|ref|XP_002193200.1| PREDICTED: DEAD box polypeptide 42 protein [Taeniopygia guttata]
          Length = 923

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L + +  +  +H ++   ER ++I + +     +LV  ++   
Sbjct: 501 VLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAAR 560

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612


>gi|189203493|ref|XP_001938082.1| ATP-dependent RNA helicase eIF4A [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|330914916|ref|XP_003296835.1| hypothetical protein PTT_07032 [Pyrenophora teres f. teres 0-1]
 gi|187985181|gb|EDU50669.1| ATP-dependent RNA helicase eIF4A [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|311330840|gb|EFQ95065.1| hypothetical protein PTT_07032 [Pyrenophora teres f. teres 0-1]
          Length = 396

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH ++   +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 271 TRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 330

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 331 VSLVINYDLPANRENYI 347


>gi|149001989|ref|ZP_01826943.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus
           pneumoniae SP14-BS69]
 gi|147759798|gb|EDK66788.1| N-acetylmannosamine-6-phosphate 2-epimerase [Streptococcus
           pneumoniae SP14-BS69]
          Length = 671

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H  +K+ E+ +I++D +  K D+LV   ++  G+++P   +
Sbjct: 484 LSEELTTH-FAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+ AD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 543 MIIMAADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTDS 582


>gi|118469425|ref|YP_886296.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
 gi|118170712|gb|ABK71608.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
          Length = 502

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ +++ L ER  +V  +H ++    R + ++  R G+ DVLV  ++   G+DI
Sbjct: 266 TKRTAQKVSDELAERGFKVGAVHGDLGQGAREKALKSFRTGEIDVLVATDVAARGIDI 323


>gi|187477560|ref|YP_785584.1| transcription-repair coupling factor [Bordetella avium 197N]
 gi|115422146|emb|CAJ48670.1| transcription-repair coupling factor [Bordetella avium 197N]
          Length = 1145

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 76/190 (40%), Gaps = 21/190 (11%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQ 233
           GSG  + +A +     +P +V+  + + A +L  E   F P   V     +    YD + 
Sbjct: 28  GSGDGWLLADLARRAGKPIVVLTADPVHAQRLADEIPLFAPELRVRQLPDWETLPYDAFS 87

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
           P             +  I+E++  +    T+S+    D + V   + +Y +      +  
Sbjct: 88  PH------------QDLISERLHTLHALMTQSV----DILTVPVTTALYRLPPPSFLAAY 131

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
               +  D ++++ L + L    Y         G F + G  I++FP     + +R+ MF
Sbjct: 132 TFSFRQRDKLDEQALRTQLTLANYNHVTQVTAPGEFCLRGGLIDLFPMG-SALPYRLDMF 190

Query: 354 GNDIEEISEF 363
            ++IE I  F
Sbjct: 191 DDEIESIRAF 200


>gi|15898673|ref|NP_343278.1| ATP-dependent helicase, putative [Sulfolobus solfataricus P2]
 gi|284175038|ref|ZP_06389007.1| ATP-dependent helicase, putative [Sulfolobus solfataricus 98/2]
 gi|13815136|gb|AAK42068.1| ATP-dependent helicase, putative [Sulfolobus solfataricus P2]
 gi|261603165|gb|ACX92768.1| type III restriction protein res subunit [Sulfolobus solfataricus
           98/2]
          Length = 665

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 599 TEYLYERNI----RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           T Y +ER I    +V+ +  +    ER++++++LR G+ DVL+   +  EG+DIPE  L+
Sbjct: 306 TAYEFERAISDLGKVKVITGDSPRYERLKVVQNLRKGEIDVLISTIVGEEGIDIPEAKLL 365

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681
            + D       +S     Q +GR  R 
Sbjct: 366 IMTDVP-----QSPLRFYQRLGRLIRG 387


>gi|71021341|ref|XP_760901.1| hypothetical protein UM04754.1 [Ustilago maydis 521]
 gi|46100997|gb|EAK86230.1| hypothetical protein UM04754.1 [Ustilago maydis 521]
          Length = 1448

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 7/107 (6%)

Query: 576  NLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +L  Q GL+  +LL V +   A+DL   L    + V  +HSE   L+R  +I   + G  
Sbjct: 1235 SLILQGGLKPPVLLFVQSIERAKDLFHELVYDGLHVDVIHSERPKLQRERVISAFKRGDI 1294

Query: 634  DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             VL+   L+  G+D     LV   D     F +S  S I  IGR  R
Sbjct: 1295 WVLICTELMARGIDFKGVQLVINYD-----FPQSVQSYIHRIGRTGR 1336


>gi|328910410|gb|AEB62006.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens LL3]
          Length = 480

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L  R      +H ++   +R+  +R  + G  +VLV  ++   GLDI  
Sbjct: 236 TKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDI-- 293

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   + + + +     KS+  AI++TT+R+
Sbjct: 294 SGVTHVYNFD---VPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRK 349


>gi|319939646|ref|ZP_08014005.1| II ATP-dependent DNA/RNA helicase [Streptococcus anginosus
           1_2_62CV]
 gi|319811235|gb|EFW07541.1| II ATP-dependent DNA/RNA helicase [Streptococcus anginosus
           1_2_62CV]
          Length = 433

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 10/127 (7%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G  +L+     R  ++L E L     N +V  + S   T  R+EI+   R  +  +LV  
Sbjct: 302 GFPLLIFASEIRRGQELAEILQSNFPNEKVGCVAS--TTENRLEIVEKFRQKEITILVTT 359

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN---SKVILYADTITKS 696
            +L  G+  P C  V +++A+   F  S+++L+Q  GR  R+ +    ++I + D  T +
Sbjct: 360 TILERGVTFP-CVDVFVVEANHHLF--SRSALVQIAGRVGRSTDRPTGELIFFHDGTTMA 416

Query: 697 IQLAIDE 703
           I+ AI E
Sbjct: 417 IEKAIKE 423


>gi|300743898|ref|ZP_07072918.1| transcription-repair coupling factor [Rothia dentocariosa M567]
 gi|300380259|gb|EFJ76822.1| transcription-repair coupling factor [Rothia dentocariosa M567]
          Length = 1229

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 90/203 (44%), Gaps = 21/203 (10%)

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPA--------IVMAPNKILAAQLYSEFKNFFPHNA 221
           VQ L+G     +   +A +  A++R +        +++ P +  A        ++ P + 
Sbjct: 32  VQTLIGAVAGVQAPLIADLAVAVRRQSRTGKTPLTLIITPTERQAEDTAHALHSYLPDHH 91

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
           +E F ++ +    E   PR+DT + K  ++   I  +     + ++     ++   V+  
Sbjct: 92  IESFPAW-ETLPHERLSPRSDT-VGKRLNVLRSITHLETPTPQVVIAPVRAVIQPLVA-- 147

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-P 340
            GI ++E      V L  G+    K+++  L    Y R D+   RG + V G  I++F P
Sbjct: 148 -GIENLEP-----VSLARGEEYSFKDVIKGLTDAAYSRVDLVAKRGEYAVRGGIIDVFAP 201

Query: 341 SHLEDVAWRVSMFGNDIEEISEF 363
           +    V  R+  FG++++EI  F
Sbjct: 202 TAQHPV--RLEFFGDELDEIRYF 222


>gi|297380629|gb|ADI35516.1| ATP-dependent DNA helicase RecG [Helicobacter pylori v225d]
          Length = 621

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFT-MAKVIE 190
           N+S+ +  F     +  + DQ  AI ++   + S    + L++G  G GKT   +A ++ 
Sbjct: 216 NNSERLKAFITSLPFKLTNDQQNAIKEIQSDLASPIACKRLIIGDVGCGKTMVILASMVL 275

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           A     ++MAP  ILA QLY+E   F P
Sbjct: 276 AYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|240281151|gb|EER44654.1| ATP-dependent RNA helicase eIF4A [Ajellomyces capsulatus H143]
 gi|325092352|gb|EGC45662.1| RNA helicase [Ajellomyces capsulatus H88]
          Length = 398

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 273 TRRKVDWLTDKLTARDFTVSAMHGDMEQQQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 332

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 333 VSLVINYDLPANRENYI 349


>gi|195612018|gb|ACG27839.1| nucleolar RNA helicase 2 [Zea mays]
          Length = 744

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 27/175 (15%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+   S RT + D+   I + A+ G  I+ T  TK+ A++++  L   +I    +H ++ 
Sbjct: 315 PLTATSKRTVLSDL---ITVYAKGGKTIVFT-RTKKDADEVSLALTN-SIASEALHGDIS 369

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI--LDADKEGFLRSKTSLIQTI 675
             +R   +   R GKF VLV  ++   GLDIP   L+    L  D E F       +   
Sbjct: 370 QHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETF-------VHRS 422

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN---INPQSVKE 727
           GR  R   +   +          L    + +R  K LE +   N   I+P S++E
Sbjct: 423 GRTGRAGKAGTAI----------LMFTSSQKRTVKSLERDVGCNFEFISPPSIEE 467


>gi|209696308|ref|YP_002264239.1| ATP-dependent DNA helicase RecG [Aliivibrio salmonicida LFI1238]
 gi|208010262|emb|CAQ80594.1| ATP-dependent DNA helicase RecG [Aliivibrio salmonicida LFI1238]
          Length = 693

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 8/106 (7%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE L   L E NI +  +H  +K+ E+  I+++ + GK  +LV   ++  G+D+P   L+
Sbjct: 508 AESLRLQLPELNIGL--VHGRMKSQEKQRIMQEFKEGKLHLLVATTVIEVGVDVPNSSLM 565

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
            I + ++ G       L Q  GR  R   +   V+LY   ++K+ Q
Sbjct: 566 IIENPERLGL----AQLHQLRGRVGRGTVASHCVLLYHAPLSKTAQ 607


>gi|154509558|ref|ZP_02045200.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799192|gb|EDN81612.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC
           17982]
          Length = 581

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 14/134 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A+   R ++   TKR A  L E L  R   V  +H ++    R + +R  R GK DVL
Sbjct: 309 LQAEGRGRTVIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQGAREQALRAFRNGKVDVL 368

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL----YADT 692
           V  ++   G+D+ +   V      ++     +   I  IGR  R  NS   +    + DT
Sbjct: 369 VATDVAARGIDVDDVTHVINYQCPED-----EKIYIHRIGRTGRAGNSGTAVTFVDWDDT 423

Query: 693 -----ITKSIQLAI 701
                I+K++ L +
Sbjct: 424 PRWSLISKALGLGV 437


>gi|39938640|ref|NP_950406.1| primosomal protein N' [Onion yellows phytoplasma OY-M]
 gi|39721749|dbj|BAD04239.1| primosomal protein N' [Onion yellows phytoplasma OY-M]
          Length = 819

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 18/142 (12%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           E +  YL +  ++ R +  +  T+ +I    ++  D    K D+L+G  ++ +GLD  + 
Sbjct: 589 EYIEAYLQKEFLQARLIKFDSDTITKISQYEKLWNDFNQEKADILLGTQMIAKGLDFHKV 648

Query: 652 GLVAILDADK-------EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            LV IL AD        +G  ++   LIQ  GR  R    KVI+ +  I      AI+  
Sbjct: 649 TLVGILMADSLLKIPSFKGSEKTFQLLIQAAGRCGRKEQGKVIVQSYNID---HFAINAA 705

Query: 705 TRRREK----QLEHNKKHNINP 722
            +  EK    QL   +K + NP
Sbjct: 706 VKYEEKEFLRQLLEERKISQNP 727


>gi|318062100|ref|ZP_07980821.1| putative ATP-dependent RNA helicase [Streptomyces sp. SA3_actG]
          Length = 527

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL +++   TKR A D++E L  R      +H ++    R + +R  R GK DVLV
Sbjct: 212 AEGRGL-VMIFCRTKRTAADISEQLQRRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLV 270

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             ++   G+D+   G+  +++       ++    I   GRA R+  +  ++  D I +
Sbjct: 271 CTDVAARGIDVE--GVTHVINYQTPEDEKTYLHRIGRTGRAGRSGTAVTLVDWDDIPR 326


>gi|317178226|dbj|BAJ56015.1| DNA recombinase [Helicobacter pylori F16]
          Length = 621

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFT-MAKVIE 190
           N+S+ +  F     +  + DQ  AI ++   + S    + L++G  G GKT   +A ++ 
Sbjct: 216 NNSERLKAFITSLPFKLTNDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVL 275

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           A     ++MAP  ILA QLY+E   F P
Sbjct: 276 AYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|295425677|ref|ZP_06818364.1| RNA helicase DeaD [Lactobacillus amylolyticus DSM 11664]
 gi|295064693|gb|EFG55614.1| RNA helicase DeaD [Lactobacillus amylolyticus DSM 11664]
          Length = 493

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++    R+ +++  R GK ++LV  ++   GLDI  
Sbjct: 249 TKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKQFRAGKLEILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 307 SGVTHVYNYD---IPQDPDSYVHRIGRTGR 333


>gi|289704875|ref|ZP_06501292.1| transcription-repair coupling factor [Micrococcus luteus SK58]
 gi|289558371|gb|EFD51645.1| transcription-repair coupling factor [Micrococcus luteus SK58]
          Length = 1218

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
            + G+G +       V L+ G+  +   ++++L    Y R D+   RG F V G  I++F
Sbjct: 153 LVAGLGELSP-----VTLRTGEERDFDGVVAALADAAYSRVDMVSRRGEFAVRGGLIDVF 207

Query: 340 PSHLEDVAWRVSMFGNDIEEISEF 363
           P   ED   R+  FG+++E++  F
Sbjct: 208 PP-TEDYPVRIEFFGDEVEQMRWF 230


>gi|253575788|ref|ZP_04853123.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844831|gb|EES72844.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 683

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N++V  +H  +   E+ E++R     +  +LV   ++  G+D+P   L+ ++DAD+ G  
Sbjct: 502 NMKVGLLHGRMTAAEKDEVMRAFYENEVQLLVSTTVVEVGVDVPNATLMIVMDADRFGL- 560

Query: 666 RSKTSLIQTIGRAARNVN-SKVILYAD 691
              + L Q  GR  R  + S  +L AD
Sbjct: 561 ---SQLHQLRGRVGRGEHASYCVLIAD 584


>gi|126315120|ref|XP_001365663.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 700

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 514 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 573

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYAD 691
            GLDI     V   D        +    +  IGR  R  N  K I + D
Sbjct: 574 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNIGKAISFFD 617


>gi|84995362|ref|XP_952403.1| RNA helicase [Theileria annulata strain Ankara]
 gi|65302564|emb|CAI74671.1| RNA helicase, putative [Theileria annulata]
          Length = 620

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 39/78 (50%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   E + EYL  + + V  +H  +   ER+E I D +  K DVL+G ++  +
Sbjct: 443 VLIFCENKADVEIINEYLILKGVEVSAIHGGLSQEERMESISDFKNHKKDVLIGTDVASK 502

Query: 645 GLDIPECGLVAILDADKE 662
           GLD P    V   D  ++
Sbjct: 503 GLDFPSIHHVINFDLPRD 520


>gi|16802907|ref|NP_464392.1| hypothetical protein lmo0866 [Listeria monocytogenes EGD-e]
 gi|224499403|ref|ZP_03667752.1| hypothetical protein LmonF1_06772 [Listeria monocytogenes Finland
           1988]
 gi|224503166|ref|ZP_03671473.1| hypothetical protein LmonFR_11698 [Listeria monocytogenes FSL
           R2-561]
 gi|254827809|ref|ZP_05232496.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165]
 gi|254832169|ref|ZP_05236824.1| hypothetical protein Lmon1_12514 [Listeria monocytogenes 10403S]
 gi|254898962|ref|ZP_05258886.1| hypothetical protein LmonJ_04075 [Listeria monocytogenes J0161]
 gi|254911550|ref|ZP_05261562.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818]
 gi|254935876|ref|ZP_05267573.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900]
 gi|16410269|emb|CAC98944.1| lmo0866 [Listeria monocytogenes EGD-e]
 gi|258600190|gb|EEW13515.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165]
 gi|258608464|gb|EEW21072.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900]
 gi|293589496|gb|EFF97830.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818]
          Length = 520

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV  ++   GLDI  
Sbjct: 249 TKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R       I +           ++ETT++R 
Sbjct: 307 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRM 363

Query: 710 KQLE 713
           + L+
Sbjct: 364 QPLQ 367


>gi|312138702|ref|YP_004006038.1| transcription repair coupling factor mfd [Rhodococcus equi 103S]
 gi|311888041|emb|CBH47353.1| transcription repair coupling factor Mfd [Rhodococcus equi 103S]
          Length = 1228

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 11/96 (11%)

Query: 273 IVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
           ++V++V  +      G+G +E      V L+IG   +  EL+S L +  Y R D+   RG
Sbjct: 137 VIVTTVRSLVQPMAPGLGDIEP-----VVLRIGSEHDFGELVSRLAELAYTRVDMVGKRG 191

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            F V G  +++FP    D   RV  +G+++ E+  F
Sbjct: 192 EFAVRGGILDVFPP-TSDHPVRVEFWGDEVTELRAF 226


>gi|315281538|ref|ZP_07870145.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
           S4-120]
 gi|307570401|emb|CAR83580.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
 gi|313609827|gb|EFR85263.1| dead-box ATP-dependent rna helicase ydbr [Listeria monocytogenes
           FSL F2-208]
 gi|313614811|gb|EFR88348.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
           S4-120]
          Length = 518

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV  ++   GLDI  
Sbjct: 251 TKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI-- 308

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R       I +           ++ETT++R 
Sbjct: 309 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRM 365

Query: 710 KQLE 713
           + L+
Sbjct: 366 QPLQ 369


>gi|297812857|ref|XP_002874312.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
 gi|297320149|gb|EFH50571.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
          Length = 748

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           S RT + D+   I + A+ G  I+ T  TKR A++++  L   +I    +H ++   +R 
Sbjct: 336 SKRTILSDL---ITVYAKGGKTIVFTQ-TKRDADEVSLAL-SNSIATEALHGDISQHQRE 390

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
             +   R GKF VLV  ++   GLDIP   LV
Sbjct: 391 RTLNAFRQGKFTVLVATDVASRGLDIPNVDLV 422


>gi|293348206|ref|XP_001059856.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 41-like [Rattus
           norvegicus]
          Length = 1348

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 482 VLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 541

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 542 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 590

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 591 VLMDLKALLLEAKQKVPP 608


>gi|290580897|ref|YP_003485289.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
 gi|254997796|dbj|BAH88397.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
          Length = 517

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD +    D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|257066460|ref|YP_003152716.1| transcription-repair coupling factor [Anaerococcus prevotii DSM
           20548]
 gi|256798340|gb|ACV28995.1| transcription-repair coupling factor [Anaerococcus prevotii DSM
           20548]
          Length = 1170

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 61/347 (17%), Positives = 137/347 (39%), Gaps = 37/347 (10%)

Query: 159 QLLKGIHSREKVQ------------LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206
           +LL+ I+S E+V+             L G+T   K   +  + E  +   +++A N+   
Sbjct: 3   KLLENINSLEQVKQIENNIDDYSPIYLSGLTDGFKPHLVLALFEKFKESLVIIAENE-KR 61

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266
           A++Y +  N    N    F             P  D       SI+ +    R      L
Sbjct: 62  AEIYLDSINGIIENKAYLF-------------PSLDINFYNIKSIDNRKLSQRMEVLTKL 108

Query: 267 LERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
            +  + IV++++  +   + +++ +++  V++K  D ++    + +L+   Y    +   
Sbjct: 109 AKGENFIVITTLKAMTNKLTTLDRFNKSFVKIKDEDIIDVNNFIENLINLNYTANSLVEN 168

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           +G F   G  I+ +P    D   R+ +F ++++ I  F   + + I  +   +I   +  
Sbjct: 169 KGDFAKRGSIIDFWPVSY-DNPVRIELFDDEVDSIRLFDKDSQRTIEKISEAEISPVTEL 227

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
           +  +   +  +K I  E+    + L+ + + +  Q+L  +       +E +    +I+  
Sbjct: 228 IYSKDDYDKVIKNINREI----MSLDNDSKEINRQKLIDKYKQITAFIEESMFVSNID-- 281

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
              L      +   +  +YIP+  L+F D+    I      Y   F 
Sbjct: 282 ---LVNPYRKDDYSSFLDYIPKSGLIFFDDVARVIEDYDNFYENFFE 325


>gi|284992633|ref|YP_003411187.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284065878|gb|ADB76816.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
           DSM 43160]
          Length = 611

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 34/64 (53%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TKR A+ + + L ER      +H ++    R + +R  R GK DVLV  ++   
Sbjct: 355 VMVFCRTKRTAQKVADELVERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVATDVAAR 414

Query: 645 GLDI 648
           G+D+
Sbjct: 415 GIDV 418


>gi|225562444|gb|EEH10723.1| ATP-dependent RNA helicase EIF4A [Ajellomyces capsulatus G186AR]
          Length = 386

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 273 TRRKVDWLTDKLTARDFTVSAMHGDMEQQQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 332

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 333 VSLVINYDLPANRENYI 349


>gi|169630359|ref|YP_001704008.1| ATP-dependent DNA helicase RecG [Mycobacterium abscessus ATCC
           19977]
 gi|169242326|emb|CAM63354.1| ATP-dependent DNA helicase RecG [Mycobacterium abscessus]
          Length = 746

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  + + ++  ++     G+ DVLV   ++  G+D+P   ++ I+DAD+ G  
Sbjct: 562 GLRIGLLHGRLPSEQKDAVMTAFNAGEIDVLVCTTVIEVGVDVPNATVMLIMDADRFGI- 620

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R  N  + L
Sbjct: 621 ---SQLHQLRGRVGRGGNKGLCL 640


>gi|28867305|ref|NP_789924.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28850539|gb|AAO53619.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 691

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+LT  L E  +RV  +H  +K  E+  I+ + + G   +LV   ++  G+D+P   L+ 
Sbjct: 507 EELTSALGE--VRVGLIHGRMKHAEKAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLMI 564

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 565 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 602


>gi|70989821|ref|XP_749760.1| ATP-dependent RNA helicase [Aspergillus fumigatus Af293]
 gi|74668891|sp|Q4WH83|DBP3_ASPFU RecName: Full=ATP-dependent RNA helicase dbp3
 gi|66847391|gb|EAL87722.1| ATP-dependent RNA helicase, putative [Aspergillus fumigatus Af293]
 gi|159129169|gb|EDP54283.1| ATP-dependent RNA helicase, putative [Aspergillus fumigatus A1163]
          Length = 503

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            A  G ++L+  L K+ A  +   L  +N +V  +H ++   ER + +   + G   VLV
Sbjct: 334 GAAVGDKVLVFCLYKKEAVRVERLLRSKNFKVAGIHGDLNQHERFKSLEAFKTGSATVLV 393

Query: 638 GINLLREGLDIPECGLV 654
             ++   GLDIP   LV
Sbjct: 394 ATDVAARGLDIPSVKLV 410


>gi|46907098|ref|YP_013487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47092073|ref|ZP_00229866.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
           H7858]
 gi|254992756|ref|ZP_05274946.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-064]
 gi|255521719|ref|ZP_05388956.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-175]
 gi|258611720|ref|ZP_05241706.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
 gi|293596169|ref|ZP_05228867.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
 gi|293596832|ref|ZP_05264606.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
 gi|300764074|ref|ZP_07074069.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
 gi|46880365|gb|AAT03664.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47019513|gb|EAL10253.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
           H7858]
 gi|258605664|gb|EEW18272.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
 gi|293582796|gb|EFF94828.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
 gi|293593090|gb|EFG00851.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
 gi|300515064|gb|EFK42116.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
 gi|332311273|gb|EGJ24368.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A]
          Length = 519

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV  ++   GLDI  
Sbjct: 251 TKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI-- 308

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R       I +           ++ETT++R 
Sbjct: 309 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRM 365

Query: 710 KQLE 713
           + L+
Sbjct: 366 QPLQ 369


>gi|301119687|ref|XP_002907571.1| ATP-dependent RNA helicase DBP2, putative [Phytophthora infestans
           T30-4]
 gi|262106083|gb|EEY64135.1| ATP-dependent RNA helicase DBP2, putative [Phytophthora infestans
           T30-4]
          Length = 546

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 28/193 (14%)

Query: 518 WNCLRPTTIV----------VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           W+   P  IV          +  T GS +L   + I  +QI+    ++D   +  S +  
Sbjct: 327 WSATWPKEIVALANDFLTDFIQVTVGSLDLTANKRI--KQIVE---VMDDHQKYSSLQDH 381

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           + D+Y        +G RI++   TKR A++L+  L       + +H      ER  ++R+
Sbjct: 382 LRDIY--------EGGRIIIFCETKRGADELSRNLRNTRYICKAIHGNKSQEERDYVLRE 433

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + G+  +LV  ++   GLDI +   V   D  K     +    I  IGR AR  N    
Sbjct: 434 FKDGRTQILVATDVASRGLDIKDIRYVVNFDMPK-----NIEDYIHRIGRTARAGNKGTS 488

Query: 688 LYADTITKSIQLA 700
           +   T + + +LA
Sbjct: 489 ISFFTASNNGRLA 501


>gi|156554399|ref|XP_001604593.1| PREDICTED: similar to DEAD box polypeptide 5 [Nasonia vitripennis]
          Length = 551

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 17/125 (13%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY------MHSEVKTL 619
           T++  +  EI      G + ++ V TK+  E++T     RNIR RY      MH +    
Sbjct: 358 TKLGTLLQEIGNVNDDGGKTIIFVETKKKVENIT-----RNIR-RYGWPAVCMHGDKSQQ 411

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  ++R+ R  K  +LV  ++   GLD+ +   V   D     +  S    I  IGR  
Sbjct: 412 ERDYVLREFRNKKGSILVATDVAARGLDVDDVRYVINFD-----YPSSSEDYIHRIGRTG 466

Query: 680 RNVNS 684
           R+ +S
Sbjct: 467 RSQSS 471


>gi|176866061|ref|NP_001116510.1| eukaryotic initiation factor 4A-II isoform c [Mus musculus]
 gi|74003462|ref|XP_860499.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 7 [Canis familiaris]
 gi|74003474|ref|XP_860687.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 12 [Canis familiaris]
 gi|114590938|ref|XP_001156093.1| PREDICTED: similar to initiation factor 4AII isoform 7 [Pan
           troglodytes]
 gi|26353724|dbj|BAC40492.1| unnamed protein product [Mus musculus]
 gi|74215693|dbj|BAE21449.1| unnamed protein product [Mus musculus]
          Length = 362

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 282 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 341

Query: 651 CGLV 654
             LV
Sbjct: 342 VSLV 345


>gi|15612477|ref|NP_224130.1| ATP-dependent DNA helicase RecG [Helicobacter pylori J99]
 gi|10720254|sp|Q9ZJA1|RECG_HELPJ RecName: Full=ATP-dependent DNA helicase recG
 gi|4156031|gb|AAD06990.1| ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
          Length = 623

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 9/102 (8%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177
           N KI  P       N+S+ +  F     +  + DQ  AI ++   + S    + L++G  
Sbjct: 209 NAKIACP-------NNSERLKAFIASLPFKLTRDQQNAIKEIQSDLTSPIACKRLIIGDV 261

Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           G GKT   +A ++ A     ++MAP  ILA QLY E   F P
Sbjct: 262 GCGKTMVILASMVLAYPNKTLLMAPTSILAKQLYHEALKFLP 303


>gi|57506018|ref|ZP_00371941.1| ATP-dependent DNA helicase RecG [Campylobacter upsaliensis RM3195]
 gi|57015626|gb|EAL52417.1| ATP-dependent DNA helicase RecG [Campylobacter upsaliensis RM3195]
          Length = 603

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 8/105 (7%)

Query: 117 LKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE--KVQLLL 174
           LKN K   P +++ I     DI  +     + P+ DQ  AI  + + + S+E  K ++++
Sbjct: 198 LKNKK--NPSKAYKIKLF--DIEKWLKTLPFSPTKDQIQAICDIREDL-SKEVAKRRVIM 252

Query: 175 GVTGSGKTFTM-AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           G  G GKT  + A  +    + A++MAP  ILA QL+ E +   P
Sbjct: 253 GDVGCGKTLVLLAAALSVYPKQALLMAPTSILAEQLFEEAQKLLP 297


>gi|310794641|gb|EFQ30102.1| RNase3 domain-containing protein [Glomerella graminicola M1.001]
          Length = 1447

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 12/104 (11%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E ++ +   R GK ++L+  ++L EG+D+P C +V   D     +  +  S IQ  GR A
Sbjct: 482 EDLQSLHQFRNGKTNLLIATSVLEEGIDVPACNVVICFD-----YPPNLKSFIQRRGR-A 535

Query: 680 RNVNSKVILYADTITK------SIQLAIDETTRRREKQLEHNKK 717
           R  +SK+++  D+         +++  +      +E++LEH K+
Sbjct: 536 RMKDSKLLMLHDSSESAPKEWAALEAEMKSQYEEKERELEHLKE 579


>gi|171462856|ref|YP_001796969.1| primosomal protein N' [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192394|gb|ACB43355.1| primosomal protein N' [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 708

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           E+ +++  G  D++VG  ++ +G D    GLVA+LDAD   F        R    L+Q  
Sbjct: 490 ELFQEIHAGNVDIVVGTQMIAKGHDYQNIGLVAVLDADSRLFSQDFRAAERLFAQLVQVA 549

Query: 676 GRAAR 680
           GRA R
Sbjct: 550 GRAGR 554


>gi|52842250|ref|YP_096049.1| ATP-dependent DNA helicase RecG [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629361|gb|AAU28102.1| ATP dependent DNA helicase RecG [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 690

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 6/90 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H  +K LE+   +   + G+ D+LV   ++  G+D+P   L+ I +A++ G    
Sbjct: 516 RVGLVHGRMKALEKEATMAAFKQGEIDLLVATTVIEVGVDVPNASLMIIENAERLGL--- 572

Query: 668 KTSLIQTIGRAARNVNSK--VILYADTITK 695
            + L Q  GR  R  N    ++LY   +++
Sbjct: 573 -SQLHQLRGRVGRGNNQSHCLLLYQSPLSQ 601


>gi|58336606|ref|YP_193191.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           NCFM]
 gi|227903163|ref|ZP_04020968.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus acidophilus
           ATCC 4796]
 gi|58253923|gb|AAV42160.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           NCFM]
 gi|227869149|gb|EEJ76570.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus acidophilus
           ATCC 4796]
          Length = 495

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++    R+ +++  R GK D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 307 SGVTHVYNYD---IPQDPDSYVHRIGRTGR 333


>gi|71745728|ref|XP_827494.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70831659|gb|EAN77164.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 735

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 5/102 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TKR AE L   L    I    +H + +  +R   ++D + G   +LV  ++   
Sbjct: 541 VLIFVETKRSAEQLHSALKSSGIPSTTIHGDRRQSDREIALKDFKSGITPILVATDVASR 600

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           GLDIP    V   D  KE            IGR  R  N  V
Sbjct: 601 GLDIPNVAHVIQYDLPKE-----MDDYTHRIGRTGRAGNKGV 637


>gi|323465797|gb|ADX69484.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus helveticus
           H10]
          Length = 499

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++    R+ +++  R GK D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 307 SGVTHVYNYD---IPQDPDSYVHRIGRTGR 333


>gi|303231880|ref|ZP_07318591.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513487|gb|EFL55518.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 523

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 8/120 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++TE L +R      +H ++   +R  +IR  R G  D+LV  ++   GLDI  
Sbjct: 250 TKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDI-- 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ--LAIDETTRRR 708
            G+  + + D      S T  +   GRA +   +    Y   I + I+   AI+  T+R+
Sbjct: 308 SGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEA----YTFVIPREIEHLHAIERLTKRK 363


>gi|325676609|ref|ZP_08156287.1| transcription-repair coupling factor [Rhodococcus equi ATCC 33707]
 gi|325552787|gb|EGD22471.1| transcription-repair coupling factor [Rhodococcus equi ATCC 33707]
          Length = 1225

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 11/96 (11%)

Query: 273 IVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
           ++V++V  +      G+G +E      V L+IG   +  EL+S L +  Y R D+   RG
Sbjct: 134 VIVTTVRSLVQPMAPGLGDIEP-----VVLRIGSEHDFGELVSRLAELAYTRVDMVGKRG 188

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            F V G  +++FP    D   RV  +G+++ E+  F
Sbjct: 189 EFAVRGGILDVFPP-TSDHPVRVEFWGDEVTELRAF 223


>gi|296107648|ref|YP_003619349.1| ATP-dependent DNA helicase RecG [Legionella pneumophila 2300/99
           Alcoy]
 gi|295649550|gb|ADG25397.1| ATP-dependent DNA helicase RecG [Legionella pneumophila 2300/99
           Alcoy]
          Length = 690

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 6/90 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H  +K LE+   +   + G+ D+LV   ++  G+D+P   L+ I +A++ G    
Sbjct: 516 RVGLVHGRMKALEKEATMAAFKQGEIDLLVATTVIEVGVDVPNASLMIIENAERLGL--- 572

Query: 668 KTSLIQTIGRAARNVNSK--VILYADTITK 695
            + L Q  GR  R  N    ++LY   +++
Sbjct: 573 -SQLHQLRGRVGRGNNQSHCLLLYQSPLSQ 601


>gi|238855614|ref|ZP_04645915.1| ATP-dependent RNA helicase [Lactobacillus jensenii 269-3]
 gi|260665326|ref|ZP_05866174.1| RNA helicase [Lactobacillus jensenii SJ-7A-US]
 gi|282933012|ref|ZP_06338406.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|238831758|gb|EEQ24094.1| ATP-dependent RNA helicase [Lactobacillus jensenii 269-3]
 gi|260560830|gb|EEX26806.1| RNA helicase [Lactobacillus jensenii SJ-7A-US]
 gi|281302866|gb|EFA95074.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
          Length = 452

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   +++T YL ++ +RV  +H  +   ER   +R +R G F  +V  +L   G+DI  
Sbjct: 253 TKTKVDEITSYLQDQGLRVAKIHGGITERERKRTLRLVRQGDFQYVVATDLAARGIDIDG 312

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +  K+        +I  IGR  RN
Sbjct: 313 VSLVINYELPKD-----LEFVIHRIGRTGRN 338


>gi|254977126|ref|ZP_05273598.1| transcription-repair coupling factor [Clostridium difficile
           QCD-66c26]
 gi|255094455|ref|ZP_05323933.1| transcription-repair coupling factor [Clostridium difficile CIP
           107932]
 gi|255316206|ref|ZP_05357789.1| transcription-repair coupling factor [Clostridium difficile
           QCD-76w55]
 gi|255518868|ref|ZP_05386544.1| transcription-repair coupling factor [Clostridium difficile
           QCD-97b34]
 gi|255652047|ref|ZP_05398949.1| transcription-repair coupling factor [Clostridium difficile
           QCD-37x79]
 gi|260685021|ref|YP_003216306.1| transcription-repair coupling factor [Clostridium difficile CD196]
 gi|260688679|ref|YP_003219813.1| transcription-repair coupling factor [Clostridium difficile R20291]
 gi|260211184|emb|CBA66656.1| transcription-repair coupling factor [Clostridium difficile CD196]
 gi|260214696|emb|CBE07346.1| transcription-repair coupling factor [Clostridium difficile R20291]
          Length = 1128

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 21/178 (11%)

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           K+GDS++ ++L   LV   Y+R       G F + G  I++F     +   R+ +F ++I
Sbjct: 143 KVGDSLDLEKLTEKLVSLGYERVSKIEGFGQFSIRGGIIDVFSLEYTN-PIRMELFDDEI 201

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           + I  F   + + I  ++   I  +  ++ P  T +  +K  KE  K        EG   
Sbjct: 202 DSIRTFDVYSQKSIDKLQQFSITPSREFIYPEKTTDALVKLKKETTKNT-----DEGTF- 255

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                 Q I Y    + +    +  ENY  Y+      E   ++F Y+ +D+++F+++
Sbjct: 256 ------QNIDY----ISSKTYFEGAENYIDYIY----PEENKSIFTYLADDAIVFIND 299


>gi|218194025|gb|EEC76452.1| hypothetical protein OsI_14162 [Oryza sativa Indica Group]
          Length = 779

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 73/144 (50%), Gaps = 14/144 (9%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+   S RT + D+   I + A+ G  I+ T  TKR A++++  L   +I    +H ++ 
Sbjct: 352 PLTSTSKRTVLSDL---ITVYAKGGKTIVFTK-TKRDADEVSLALTN-SIASEALHGDIS 406

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI--LDADKEGFL-RSKTSLIQT 674
             +R   +   R GKF VLV  ++   GLDIP   L+    L  D E F+ RS  +    
Sbjct: 407 QHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT---- 462

Query: 675 IGRAARNVNSKVILYADTITKSIQ 698
            GRA +   + ++++ ++  ++++
Sbjct: 463 -GRAGK-AGTAILMFTNSQRRTVR 484


>gi|308198038|ref|XP_001387028.2| predicted protein [Scheffersomyces stipitis CBS 6054]
 gi|149389001|gb|EAZ63005.2| predicted protein [Pichia stipitis CBS 6054]
          Length = 941

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EII++ + G +++LV  ++  EGLDI E  L+   D+       S    IQ +GR  R  
Sbjct: 469 EIIKNFKQGTYNILVATSIGEEGLDIGEVDLIICYDS-----TSSPIKNIQRMGRTGRKR 523

Query: 683 NSKVIL 688
           + KV+L
Sbjct: 524 DGKVVL 529


>gi|329939625|ref|ZP_08288926.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus
           M045]
 gi|329301195|gb|EGG45090.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus
           M045]
          Length = 848

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL ++    TKR A D+ E L +R      +H ++    R + +R  R GK DVLV
Sbjct: 293 AEGRGLAMIF-CRTKRTAADIAEQLQQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLV 351

Query: 638 GINLLREGLDI 648
             ++   G+D+
Sbjct: 352 CTDVAARGIDV 362


>gi|320094383|ref|ZP_08026169.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319978684|gb|EFW10241.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 1194

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           V++ +GD V+  E  + L    Y+R D+   RG   V G  +++FP   E    RV ++G
Sbjct: 145 VRIAVGDVVDLPEATARLSDLGYQRVDMVEARGQMSVRGGILDVFPPQ-EPHPLRVELWG 203

Query: 355 NDIEEISEF 363
           +++EEI  F
Sbjct: 204 DEVEEIRAF 212


>gi|123478917|ref|XP_001322619.1| helicase  [Trichomonas vaginalis G3]
 gi|121905468|gb|EAY10396.1| Helicase conserved C-terminal domain containing protein
           [Trichomonas vaginalis G3]
          Length = 323

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + + + L   NI   +   +    +R E+++  R  +F VL+  NLL  G+DIP 
Sbjct: 186 TRRYIQAVQQLLEYMNIACEWCSPDRTKDDRREVVKKFRNQQFKVLLTTNLLARGIDIPS 245

Query: 651 CGLVAILDADK-EGFLRSKTSLIQTIGRAAR 680
           C +V   D  + E F     S +   GR  R
Sbjct: 246 CNVVINFDMPRMERFEPDYDSYLHRSGRCGR 276


>gi|50409637|ref|XP_456892.1| DEHA2A12958p [Debaryomyces hansenii CBS767]
 gi|74659543|sp|Q6BY27|DBP2_DEBHA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49652556|emb|CAG84869.1| DEHA2A12958p [Debaryomyces hansenii]
          Length = 536

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 3/112 (2%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+   TKR  +++T YL         +H + +  ER  ++++ + GK  ++V  ++  
Sbjct: 354 KCLIFASTKRTCDEITNYLRADGWPALAIHGDKQQGERDWVLKEFKTGKSPIMVATDVAA 413

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            G+D+   G+  +++ D  G +      I   GRA  +  + V  + D  +K
Sbjct: 414 RGIDVK--GISYVINLDMPGNIEDYVHRIGRTGRAG-STGTAVSFFTDNNSK 462


>gi|332971571|gb|EGK10521.1| ATP-dependent RNA helicase [Kingella kingae ATCC 23330]
          Length = 481

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E L + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 275 TKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 334

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   S + +
Sbjct: 335 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRSGIAI 367


>gi|322386965|ref|ZP_08060589.1| competence protein FA [Streptococcus cristatus ATCC 51100]
 gi|321269247|gb|EFX52183.1| competence protein FA [Streptococcus cristatus ATCC 51100]
          Length = 433

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 8/99 (8%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV ++ S   T  R+EI+ + R  +  +LV   +L  G+  P C  V +L+A+   F  S
Sbjct: 330 RVGFVAS--TTENRLEIVEEFRKREITILVTTTILERGVTFP-CVDVFVLEANHRLF--S 384

Query: 668 KTSLIQTIGRAARNV---NSKVILYADTITKSIQLAIDE 703
           +++L+Q  GR  R++      +  + D  T SI+ AI E
Sbjct: 385 RSALVQISGRVGRSMERPTGDLFFFHDGTTHSIEKAIRE 423


>gi|320182099|gb|EFW57003.1| ATP-dependent RNA helicase SrmB [Shigella boydii ATCC 9905]
          Length = 444

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +VL
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR AR
Sbjct: 303 VATDVAARGIDIPDASHVFNFD-----MPRSGDTYLHRIGRTAR 341


>gi|317182726|dbj|BAJ60510.1| DNA recombinase [Helicobacter pylori F57]
          Length = 621

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFT-MAKVIE 190
           N+S+ +  F     +  + DQ  AI ++   + S    + L++G  G GKT   +A ++ 
Sbjct: 216 NNSERLKAFITSLPFKLTNDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMVL 275

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           A     ++MAP  ILA QLY+E   F P
Sbjct: 276 AYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|297621578|ref|YP_003709715.1| Primosomal protein N' [Waddlia chondrophila WSU 86-1044]
 gi|297376879|gb|ADI38709.1| Primosomal protein N' [Waddlia chondrophila WSU 86-1044]
          Length = 743

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 8/74 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE----GFLRSKTS---LIQTI 675
           ++++D + GK DVL+G  ++ +GL  PE  LV +++ D       F  S+T    + Q  
Sbjct: 539 QLLKDFKTGKADVLIGTQMVAKGLHFPEVTLVGVINCDGSLNIPDFRASETVFQLITQVA 598

Query: 676 GRAARN-VNSKVIL 688
           GRA R  +  +VIL
Sbjct: 599 GRAGRGALPGEVIL 612


>gi|296332826|ref|ZP_06875286.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673172|ref|YP_003864844.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150106|gb|EFG90995.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411416|gb|ADM36535.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 494

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L  R      +H ++   +R+  +R  + G  +VLV  ++   GLDI  
Sbjct: 250 TKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDI-- 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   + + + +     KS+  AI++TT+R+
Sbjct: 308 SGVTHVYNFD---VPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRK 363


>gi|269967184|ref|ZP_06181249.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|269828174|gb|EEZ82443.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 522

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 16/115 (13%)

Query: 553 GLVDPPVEIR------SARTQVEDVYD-EINLAAQQGLR---------ILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y  ++   A   ++         +L+   TK  A 
Sbjct: 198 GLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQVLVFTKTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
            L ++L E+N+    +H       R + + D + G+  VLV  ++   G+DIP+ 
Sbjct: 258 RLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAARGIDIPQL 312


>gi|154300125|ref|XP_001550479.1| hypothetical protein BC1G_10438 [Botryotinia fuckeliana B05.10]
 gi|150856727|gb|EDN31919.1| hypothetical protein BC1G_10438 [Botryotinia fuckeliana B05.10]
          Length = 1398

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 6/66 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           + +   + GK D+L+  N+L EG+D+P C LV      K   L+   S +Q  GR AR  
Sbjct: 493 DTLSSFKRGKIDILIATNVLEEGIDVPACNLVICF--SKPANLK---SFVQRRGR-ARQQ 546

Query: 683 NSKVIL 688
           +SK+IL
Sbjct: 547 DSKLIL 552


>gi|125537372|gb|EAY83860.1| hypothetical protein OsI_39082 [Oryza sativa Indica Group]
          Length = 630

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G + ++   TKR A+ L+ Y   R+ + + +H ++   +R   ++  R G F++L+  +
Sbjct: 341 KGGKCIVFTQTKRDADRLS-YTMGRSFQCQALHGDITQAQRERTLKGFREGHFNILIATD 399

Query: 641 LLREGLDIPECGLV 654
           +   GLDIP   LV
Sbjct: 400 VAARGLDIPNVDLV 413


>gi|114590936|ref|XP_001155860.1| PREDICTED: similar to initiation factor 4AII isoform 3 [Pan
           troglodytes]
          Length = 361

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 282 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 341

Query: 651 CGLV 654
             LV
Sbjct: 342 VSLV 345


>gi|74003456|ref|XP_860391.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 4 [Canis familiaris]
 gi|114590940|ref|XP_001155920.1| PREDICTED: similar to initiation factor 4AII isoform 4 [Pan
           troglodytes]
 gi|114590942|ref|XP_001156431.1| PREDICTED: similar to initiation factor 4AII isoform 10 [Pan
           troglodytes]
          Length = 360

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 282 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 341

Query: 651 CGLV 654
             LV
Sbjct: 342 VSLV 345


>gi|315638822|ref|ZP_07893994.1| DNA helicase RecG [Campylobacter upsaliensis JV21]
 gi|315481040|gb|EFU71672.1| DNA helicase RecG [Campylobacter upsaliensis JV21]
          Length = 603

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 8/105 (7%)

Query: 117 LKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE--KVQLLL 174
           LKN K   P +++ I     DI  +     + P+ DQ  AI  + + + S+E  K ++++
Sbjct: 198 LKNKK--NPSKAYKIELF--DIEKWLKTLPFSPTKDQIQAICDIREDL-SKEVAKRRVIM 252

Query: 175 GVTGSGKTFTM-AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           G  G GKT  + A  +    + A++MAP  ILA QL+ E +   P
Sbjct: 253 GDVGCGKTLVLLAAALSVYPKQALLMAPTSILAEQLFEEAQKLLP 297


>gi|322433996|ref|YP_004216208.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX9]
 gi|321161723|gb|ADW67428.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX9]
          Length = 1233

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 39/205 (19%), Positives = 87/205 (42%), Gaps = 13/205 (6%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G+T + +   +     A + PA+++  +   A  L         H A+           P
Sbjct: 37  GLTFTARALYLPLFAAASESPALILVADNKAAEAL---------HQAILATCELTGALDP 87

Query: 235 EAYV--PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYS 291
            + V  P  D    +  S + +I   R ++   +  ++  +V++ + S    +   + YS
Sbjct: 88  ASIVRLPAHDVLPFESLSPHPEIQETRAASLWKITSKSAKLVIAPIESACLKLFPADFYS 147

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
            + ++L++ +      L+  L+   Y R D+  + G   + G  ++++   + D   R+ 
Sbjct: 148 ALALRLRVNEEYLPDMLVEHLLSVGYTRVDVVEMPGQLTLRGGILDVYSPEM-DRPIRID 206

Query: 352 MFGNDIEEISEFYPLTGQKIRNVET 376
            FG++IE I +F P T +    ++T
Sbjct: 207 FFGDEIESIRKFDPETQRSSSQLDT 231


>gi|289550302|ref|YP_003471206.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
 gi|315660238|ref|ZP_07913093.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           lugdunensis M23590]
 gi|289179834|gb|ADC87079.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
 gi|315494665|gb|EFU83005.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           lugdunensis M23590]
          Length = 504

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 336


>gi|261331698|emb|CBH14692.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 738

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 5/102 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TKR AE L   L    I    +H + +  +R   ++D + G   +LV  ++   
Sbjct: 544 VLIFVETKRSAEQLHSALKSSGIPSTTIHGDRRQSDREIALKDFKSGITPILVATDVASR 603

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           GLDIP    V   D  KE            IGR  R  N  V
Sbjct: 604 GLDIPNVAHVIQYDLPKE-----MDDYTHRIGRTGRAGNKGV 640


>gi|295672568|ref|XP_002796830.1| ATP-dependent RNA helicase eIF4A [Paracoccidioides brasiliensis
           Pb01]
 gi|226282202|gb|EEH37768.1| ATP-dependent RNA helicase eIF4A [Paracoccidioides brasiliensis
           Pb01]
          Length = 398

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 273 TRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 332

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 333 VSLVINYDLPANRENYI 349


>gi|8825618|gb|AAF74278.2| vasa-like protein [Danio dangila]
          Length = 399

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  I    +H + +  ER + + D R+G+  VLV  ++  
Sbjct: 214 RTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRIGQCPVLVATSVAA 273

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDI +   V   D        S    +  IGR  R  N+
Sbjct: 274 RGLDIEQVQHVVNFDMPS-----SIDEYVHRIGRTGRCGNT 309


>gi|485388|dbj|BAA06336.1| eukaryotic initiation factor 4AII [Homo sapiens]
          Length = 407

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 282 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 341

Query: 651 CGLV 654
             LV
Sbjct: 342 VSLV 345


>gi|116492606|ref|YP_804341.1| ATP-dependent DNA helicase RecG [Pediococcus pentosaceus ATCC
           25745]
 gi|116102756|gb|ABJ67899.1| ATP-dependent DNA helicase RecG [Pediococcus pentosaceus ATCC
           25745]
          Length = 675

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 6/97 (6%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++L E+  E+   +  +H ++   ++ +I+ D + GK+  LV   ++  G+D+P   L+ 
Sbjct: 486 QELCEFFGEK-YPIAILHGKMDGAQKDQIMADFKEGKYMGLVSTTVIEVGVDVPNATLMV 544

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYAD 691
           I DAD+ G       L Q  GR  R    +  IL AD
Sbjct: 545 IQDADRFGL----AQLHQLRGRVGRGQYQAYCILVAD 577


>gi|315221977|ref|ZP_07863888.1| putative competence protein ComFA [Streptococcus anginosus F0211]
 gi|315188943|gb|EFU22647.1| putative competence protein ComFA [Streptococcus anginosus F0211]
          Length = 433

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 8/101 (7%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N +V ++ S   T  R+EI+   R  +  +LV   +L  G+  P C  V +++A+   F 
Sbjct: 328 NEKVGFVAS--TTENRLEIVEKFRQKEITILVTTTILERGVTFP-CVDVFVVEANHRLF- 383

Query: 666 RSKTSLIQTIGRAARNVN---SKVILYADTITKSIQLAIDE 703
            S+++L+Q  GR  R+++    ++I + D  T +I+ AI E
Sbjct: 384 -SRSALVQIAGRVGRSMDRPTGELIFFHDGATMAIEKAIKE 423


>gi|308185293|ref|YP_003929426.1| ATP-dependent DNA helicase RecG [Helicobacter pylori SJM180]
 gi|308061213|gb|ADO03109.1| ATP-dependent DNA helicase RecG [Helicobacter pylori SJM180]
          Length = 623

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFT-MAKVIE 190
           N+S+ +  F     +  + DQ  AI ++   + S    + L++G  G GKT   +A ++ 
Sbjct: 216 NNSERLKAFIASLPFKLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVL 275

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           A     ++MAP  ILA QLY+E   F P
Sbjct: 276 AYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|302696869|ref|XP_003038113.1| hypothetical protein SCHCODRAFT_63532 [Schizophyllum commune H4-8]
 gi|300111810|gb|EFJ03211.1| hypothetical protein SCHCODRAFT_63532 [Schizophyllum commune H4-8]
          Length = 396

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LTE + + N  V  MH E+   ER  I+ + R
Sbjct: 255 DLYDTLTIT-----QAVIFCNTRRKVDWLTEKMRQSNFTVSSMHGEMVQKERDAIMAEFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  A++E +       I  IGR+ R
Sbjct: 310 AGTSRVLITTDVWARGIDVQQVSLVINYDLPANRENY-------IHRIGRSGR 355


>gi|289640625|ref|ZP_06472797.1| helicase domain protein [Frankia symbiont of Datisca glomerata]
 gi|289509514|gb|EFD30441.1| helicase domain protein [Frankia symbiont of Datisca glomerata]
          Length = 579

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL I+  V T+R A+ + + L  R      +H ++   +R + +R  R GK DVLV
Sbjct: 165 AEGRGLAIVF-VRTRRTADRVADDLTGRGFAAAAVHGDIGQGQREQALRAFRSGKIDVLV 223

Query: 638 GINLLREGLDI 648
             ++   G+DI
Sbjct: 224 ATDVAARGIDI 234


>gi|255730427|ref|XP_002550138.1| eukaryotic initiation factor 4A [Candida tropicalis MYA-3404]
 gi|240132095|gb|EER31653.1| eukaryotic initiation factor 4A [Candida tropicalis MYA-3404]
          Length = 397

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD I++      + ++   T+   E LT  L E++  V  +H+++   ER  I+++ R
Sbjct: 255 DLYDSISVT-----QAVIFCNTRTKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   +L+  +LL  G+D+ +  LV   D  A+KE ++
Sbjct: 310 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 347


>gi|118489724|gb|ABK96663.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 481

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           S RT + D+   + + A+ G  I+ T  TKR A++++  L    I    +H ++   +R 
Sbjct: 73  SKRTILSDL---VTVYAKGGKTIIFT-QTKRDADEVSMALTN-TIASEALHGDISQHQRE 127

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
             +   R GKF VLV  ++   GLDIP   L+
Sbjct: 128 RTLNGFRQGKFTVLVATDVASRGLDIPNVDLI 159


>gi|169596224|ref|XP_001791536.1| hypothetical protein SNOG_00869 [Phaeosphaeria nodorum SN15]
 gi|111071244|gb|EAT92364.1| hypothetical protein SNOG_00869 [Phaeosphaeria nodorum SN15]
          Length = 598

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RIL+   +K   + + +++Y + + V  MHS+    ER + +R  R G+  ++V   +  
Sbjct: 388 RILVFTNSKFKCDTVDDFIYNKGLPVTSMHSDRTQREREDALRSFRTGRCPIMVATGVSA 447

Query: 644 EGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVN 683
            GLD+     V   D  + + G +   T  I  IGR AR  N
Sbjct: 448 RGLDVANIKHVINYDLPSTQHGGI---TEYIHRIGRTARIGN 486


>gi|50311547|ref|XP_455798.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74605081|sp|Q6CJU1|DBP5_KLULA RecName: Full=ATP-dependent RNA helicase DBP5
 gi|49644934|emb|CAG98506.1| KLLA0F15950p [Kluyveromyces lactis]
          Length = 469

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 40/73 (54%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L +   +V  +H ++++ +R  +I D R G+  VL+  N+L  G
Sbjct: 321 IIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARG 380

Query: 646 LDIPECGLVAILD 658
           +DIP   +V   D
Sbjct: 381 IDIPSVSMVVNYD 393


>gi|71033289|ref|XP_766286.1| eukaryotic translation initiation factor 4A [Theileria parva strain
           Muguga]
 gi|68353243|gb|EAN34003.1| eukaryotic translation initiation factor 4A, putative [Theileria
           parva]
          Length = 394

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   + L + + + N  V  MH E+   ER +I++  R G+  VL+  +L   GLD+ +
Sbjct: 269 TKEKVDWLAKKMKDGNFEVCKMHGEMSQKERNDIMQRFRKGESRVLISTDLWGRGLDVQQ 328

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        S+ S I  IGR+ R
Sbjct: 329 VSLVVNYD-----LPNSRESYIHRIGRSGR 353


>gi|310779687|ref|YP_003968020.1| transcription-repair coupling factor [Ilyobacter polytropus DSM
           2926]
 gi|309749010|gb|ADO83672.1| transcription-repair coupling factor [Ilyobacter polytropus DSM
           2926]
          Length = 991

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 96/209 (45%), Gaps = 19/209 (9%)

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           N  +Y+ +  DY +   Y       IE  +  +E+   + +   + L  R++ I++ S+ 
Sbjct: 37  NIEDYYFTLSDYSKESVYK------IENFNYSDEEFQTINYGLLKILENRDNWILLVSLE 90

Query: 280 CIYGIGSVESY--SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
                G +  Y  S   ++L +    + K +   LVK  +++  +   R  +   GD ++
Sbjct: 91  -----GILRDYFASGDQIELCLEKDYDLKAIEEKLVKNGFRKNYLVEKRWEYSRRGDILD 145

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           I+P + E+   R+  FG+++E IS F   T + + N++ I +Y N++    +        
Sbjct: 146 IYPPNGENPV-RIEFFGDEVERISYFNIETQKSMGNLDKINVYINNNKAGKKTFSELLEN 204

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRI 426
            + +EL++ L     E + L   +LE+ I
Sbjct: 205 MVSDELEIYL-----ENKELMNYKLEELI 228


>gi|311113149|ref|YP_003984371.1| transcription-repair coupling factor [Rothia dentocariosa ATCC
           17931]
 gi|310944643|gb|ADP40937.1| transcription-repair coupling factor [Rothia dentocariosa ATCC
           17931]
          Length = 1229

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 90/203 (44%), Gaps = 21/203 (10%)

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPA--------IVMAPNKILAAQLYSEFKNFFPHNA 221
           VQ L+G     +   +A +  A++R +        +++ P +  A        ++ P + 
Sbjct: 32  VQTLIGAVAGVQAPLIADLAVAVRRQSRTGKTPLTLIITPTERQAEDTAHALHSYLPDHH 91

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
           +E F ++ +    E   PR+DT + K  ++   I  +     + ++     ++   V+  
Sbjct: 92  IESFPAW-ETLPHERLSPRSDT-VGKRLNVLRSITHLETPTPQVVIAPVRAVIQPLVA-- 147

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-P 340
            GI ++E      V L  G+    K+++  L    Y R D+   RG + V G  I++F P
Sbjct: 148 -GIENLEP-----VSLARGEEYSFKDVIKGLTDAAYSRVDLVAKRGEYAVRGGIIDVFAP 201

Query: 341 SHLEDVAWRVSMFGNDIEEISEF 363
           +    V  R+  FG++++EI  F
Sbjct: 202 TAQHPV--RLEFFGDELDEIRYF 222


>gi|296178353|dbj|BAJ07808.1| putative vasa protein [Oxycomanthus japonicus]
          Length = 851

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+ V TKR A+ L   L +       +H +    ER E +RD + G+  V+V  ++  
Sbjct: 668 KTLVFVETKRSADFLASLLSQSGFPTTSIHGDRMQKEREEALRDFKTGRAPVMVATSVAA 727

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADT 692
            GLDIP+   V   D  ++      +  +  IGR  R  N  K   + D+
Sbjct: 728 RGLDIPKVKHVINYDLPED-----ISEYVHRIGRTGRVGNLGKATSFFDS 772


>gi|284018161|sp|A3GH78|MPH1_PICST RecName: Full=ATP-dependent DNA helicase MPH1
          Length = 1050

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EII++ + G +++LV  ++  EGLDI E  L+   D+       S    IQ +GR  R  
Sbjct: 533 EIIKNFKQGTYNILVATSIGEEGLDIGEVDLIICYDS-----TSSPIKNIQRMGRTGRKR 587

Query: 683 NSKVIL 688
           + KV+L
Sbjct: 588 DGKVVL 593


>gi|255023812|ref|ZP_05295798.1| ATP-dependent DNA helicase, recQ [Listeria monocytogenes FSL
           J1-208]
          Length = 322

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 28/184 (15%)

Query: 523 PTTIVVSATPG---------SWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVY 572
           P T+V++AT              L  C+ II   + RP   +   VE   S + + E +Y
Sbjct: 19  PVTMVLTATATKKVRADILTQLYLTDCEQIIYS-VNRPN--ISLQVEKFSSQQLKKERLY 75

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLG 631
           + I+     G+   +   +K++AE +   L E   +RV Y H ++ T +RI I +    G
Sbjct: 76  ELISKLQTPGI---IYFSSKKLAESIARELSEIAELRVAYYHGDMDTEDRIIIQQQFVYG 132

Query: 632 KFDVLVGINLLREGLDIPECGLVA--ILDADKEGFLRSKTSLIQTIGRAARNVNSKV--I 687
           + D++   +    G+D  +   V    + AD E +L       Q IGRA R+    V  +
Sbjct: 133 QLDIICATSAFGMGIDKADIRFVIHYHMPADLEAYL-------QEIGRAGRDSKDSVAIL 185

Query: 688 LYAD 691
           LYA+
Sbjct: 186 LYAN 189


>gi|291456465|ref|ZP_06595855.1| transcription-repair coupling factor [Bifidobacterium breve DSM
           20213]
 gi|291381742|gb|EFE89260.1| transcription-repair coupling factor [Bifidobacterium breve DSM
           20213]
          Length = 1196

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 38/221 (17%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P G +PA  A + +G++      ++L V  SG+    A+      R      PN I  AQ
Sbjct: 60  PEGLRPALAAAIAQGVNGGAGKPVVL-VVASGRE---AEETVGSLRSWYDGDPNDI--AQ 113

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L  E     PH               E   PR DT   + +       R++H +  + + 
Sbjct: 114 L--EAWETLPH---------------ERLSPRADTVASRMAVFR----RLKHPSDANPMF 152

Query: 269 RNDCIVVSSV-----SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
               I+V  +       + G+G VE      +   +G+ +   E    L++  Y R ++ 
Sbjct: 153 GPIRILVMPIRSLIQPVVQGLGDVEP-----LVFTVGEDLPLDEAAKRLIENAYTRVELV 207

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + RG F V G  +++FP        R+  FG++I+ I EF+
Sbjct: 208 MDRGEFAVRGGILDVFPPTAPHPV-RIEFFGDEIDTIKEFH 247


>gi|254491416|ref|ZP_05104595.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224462894|gb|EEF79164.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 402

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           K  AE+++ +L  +NI  + +H +    +R E  R  R GK   LV  ++   GLD+P+ 
Sbjct: 254 KERAEEVSAFLQSQNISAQVVHGDFNQADRRERTRKFRQGKVKALVATDVAARGLDLPQV 313

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             V   D    G +      I  +GR  R
Sbjct: 314 SHVINYDVPFRGDI-----YIHRVGRTGR 337


>gi|167041390|gb|ABZ06143.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
           HF4000_005K23]
          Length = 427

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 10/136 (7%)

Query: 549 IRPTGLVDPPVEIRSARTQVE--DVYDEIN--LAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           IR      P  +I+    QV   D Y+++   L  ++G  ILL V TKR A+ + + L++
Sbjct: 203 IRVGSTTTPISKIKQEVIQVSEGDKYNKLQEELYKRKG-SILLFVKTKRNADKMADRLHD 261

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
              R   MH  ++  +R   +   R GK  +L+   L   GLD+P     +I        
Sbjct: 262 DGHRCDCMHGNLRQSKRQRTLIAFRSGKIRILISTELASRGLDVP-----SIQHVINYHL 316

Query: 665 LRSKTSLIQTIGRAAR 680
            +     I  IGR AR
Sbjct: 317 PQVPEDFIHRIGRTAR 332


>gi|148665241|gb|EDK97657.1| eukaryotic translation initiation factor 4A2, isoform CRA_c [Mus
           musculus]
          Length = 367

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 287 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 346

Query: 651 CGLV 654
             LV
Sbjct: 347 VSLV 350


>gi|123500450|ref|XP_001327863.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121910798|gb|EAY15640.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 478

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y  +++      + ++   +K   + ++E L +    V  +H+ +  LER  I+RD R
Sbjct: 327 DIYGSVSIQ-----KAIIFANSKNAVDYISEQLQQHGFGVAPIHAGLDQLERDRIMRDFR 381

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  +LL  G+D+ +  LV   +  K+         I  IGR+ R
Sbjct: 382 TGTARVLISTDLLARGIDVQQVTLVINFELPKK-----LEQYIHRIGRSGR 427


>gi|46143481|ref|ZP_00135158.2| COG1200: RecG-like helicase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126209289|ref|YP_001054514.1| ATP-dependent DNA helicase RecG [Actinobacillus pleuropneumoniae
           L20]
 gi|126098081|gb|ABN74909.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 693

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL   L   ++R+  +H  +K  E+ EI+ + +    D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLQRAL--PDLRIGLVHGRMKPQEKQEIMAEFKAANIDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I ++++ G       L Q  GR  R   +   V+LY   + K
Sbjct: 567 IENSERLGL----AQLHQLRGRVGRGATASHCVLLYKPPLGK 604


>gi|313624489|gb|EFR94491.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
           J1-023]
          Length = 516

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV  ++   GLDI  
Sbjct: 249 TKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R       I +           ++ETT++R 
Sbjct: 307 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRM 363

Query: 710 KQLE 713
           + L+
Sbjct: 364 QPLQ 367


>gi|307251432|ref|ZP_07533346.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306856516|gb|EFM88658.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 693

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL   L   ++R+  +H  +K  E+ EI+ + +    D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLQRAL--PDLRIGLVHGRMKPQEKQEIMAEFKAANIDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I ++++ G       L Q  GR  R   +   V+LY   + K
Sbjct: 567 IENSERLGL----AQLHQLRGRVGRGATASHCVLLYKPPLGK 604


>gi|302769696|ref|XP_002968267.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
 gi|300163911|gb|EFJ30521.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
          Length = 614

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + A+ G  I+ T  TKR  +D+   +  R+I    +H ++   +R + +   R G+
Sbjct: 243 DLLTVYAKGGKAIVFTK-TKRDTDDVAAVM-SRSIGCEALHGDISQYQREKTLSGFRDGR 300

Query: 633 FDVLVGINLLREGLDIPECGLV 654
           F+VLV  ++   GLDIP   L+
Sbjct: 301 FNVLVATDVAARGLDIPNVDLI 322


>gi|262047905|ref|ZP_06020851.1| phage helicase [Lactobacillus crispatus MV-3A-US]
 gi|260571783|gb|EEX28358.1| phage helicase [Lactobacillus crispatus MV-3A-US]
          Length = 447

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 605 RNIRVRYMHSEVKTLE--RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           R+  +  +H++ KT E  R +I+ D + GK  +L  ++L+ EG ++P+C  V +L
Sbjct: 236 RDAGINAVHADAKTPESKRDKIMVDFKEGKIKILCNVDLVSEGFNVPDCSCVVLL 290


>gi|253743371|gb|EES99785.1| ATP-dependent RNA helicase [Giardia intestinalis ATCC 50581]
          Length = 553

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+H+ +   +R EI+   R  +  +LV  ++L  GLD P  GLV   D   +      T 
Sbjct: 375 YLHAGLTKNQRHEIVTKFRAAELWILVCTDVLARGLDFPRIGLVINFDIPSD-----LTH 429

Query: 671 LIQTIGRAARNV-NSKVILYAD 691
            I  IGRA R    + V L+ +
Sbjct: 430 YIHRIGRAGRQTEGTAVTLFTE 451


>gi|319426232|gb|ADV54306.1| transcription-repair coupling factor [Shewanella putrefaciens 200]
          Length = 1162

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 102/237 (43%), Gaps = 33/237 (13%)

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           +++ P  D   ++  +++ QI +  HS           ++V   + +  +      S  +
Sbjct: 84  DSFSPHQDLISQRLETLS-QISQTEHS----------VVIVPVTTLMMRLPPKAYLSANV 132

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             LK GD  +   +   L    Y   +     G F + G  ++IFP+ + ++  R+ +F 
Sbjct: 133 FVLKKGDRYQLHNVRQHLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGV-NMPLRIELFD 191

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           +++E I  F P T + +  VE+I++     +    PT + A++  ++  + R   + K  
Sbjct: 192 DEVETIRHFDPETQRSLHPVESIRLLPAKEF----PTDSAAIEGFRQRYRRRFEVIVK-- 245

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
              E + + Q ++ +L           IENY          +   TLFEY+P+++ L
Sbjct: 246 ---EPESVYQLVSRNL-------MPAGIENYLPLFF-----DEVATLFEYLPKETQL 287


>gi|119472958|ref|ZP_01614814.1| ATP-dependent DNA helicase recG [Alteromonadales bacterium TW-7]
 gi|119444627|gb|EAW25937.1| ATP-dependent DNA helicase recG [Alteromonadales bacterium TW-7]
          Length = 693

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 98/245 (40%), Gaps = 46/245 (18%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           L+ +DE H          R   H++ TL E G               ++N   P  +V++
Sbjct: 393 LIIIDEQH----------RFGVHQRLTLREKG---------------QFNGCYPHQLVMT 427

Query: 530 ATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
           ATP    L       +E  I    P G   P   +    T+ +D+   +  A  +  R +
Sbjct: 428 ATPIPRTLAMTAYADLEVSIIDELPPGRT-PITTVALPDTRRDDIITRVKSACNEQERQV 486

Query: 587 LTVLT---------KRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             V T          + AED    L E   ++ +  +H  +K  E+  I+ D + G   V
Sbjct: 487 YWVCTLIDESEALQCQAAEDSAVQLKEALPDLSIGLVHGRMKPAEKQSIMDDFKKGLIHV 546

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSK-VILYADTI 693
           LV   ++  G+D+P   L+ I + ++ G       L Q  GR  R N+ S  V+LY   +
Sbjct: 547 LVATTVIEVGVDVPNASLIIIENPERLGL----AQLHQLRGRVGRGNIASHCVLLYHAPL 602

Query: 694 TKSIQ 698
           + + Q
Sbjct: 603 SHTAQ 607


>gi|118587055|ref|ZP_01544485.1| primosomal replication factor Y, primosomal protein N' [Oenococcus
           oeni ATCC BAA-1163]
 gi|118432465|gb|EAV39201.1| primosomal replication factor Y, primosomal protein N' [Oenococcus
           oeni ATCC BAA-1163]
          Length = 803

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 27/38 (71%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           +I+RD   G +DVL+G  ++ +GLD P+  LV +++AD
Sbjct: 596 KILRDFGKGNYDVLLGTQMVAKGLDFPDVTLVGVINAD 633


>gi|47094873|ref|ZP_00232487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a
           F6854]
 gi|284801196|ref|YP_003413061.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578]
 gi|284994338|ref|YP_003416106.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923]
 gi|47016755|gb|EAL07674.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a
           F6854]
 gi|284056758|gb|ADB67699.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578]
 gi|284059805|gb|ADB70744.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923]
          Length = 522

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV  ++   GLDI  
Sbjct: 251 TKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI-- 308

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R       I +           ++ETT++R 
Sbjct: 309 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRM 365

Query: 710 KQLE 713
           + L+
Sbjct: 366 QPLQ 369


>gi|316978431|gb|EFV61418.1| putative ATP-dependent RNA helicase Pl10 [Trichinella spiralis]
          Length = 552

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N ++ + L  L+ V TKR A DL  +L      V  +H ++K  ER + +   R G 
Sbjct: 337 DLLNASSPETL-TLIFVETKRGAADLAYFLSGERYSVVAIHGDLKQFEREQHLESFRSGN 395

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
             +LV   +   GLDIP    V   D   E         +  IGR  R  N
Sbjct: 396 TPILVATAVAARGLDIPNVKHVINYDLPSE-----IDEYVHRIGRTGRVGN 441


>gi|303251147|ref|ZP_07337331.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307253511|ref|ZP_07535381.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649998|gb|EFL80170.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306859012|gb|EFM91055.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 693

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL   L   ++R+  +H  +K  E+ EI+ + +    D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLQRAL--PDLRIGLVHGRMKPQEKQEIMAEFKAANIDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I ++++ G       L Q  GR  R   +   V+LY   + K
Sbjct: 567 IENSERLGL----AQLHQLRGRVGRGATASHCVLLYKPPLGK 604


>gi|298245667|ref|ZP_06969473.1| type III restriction protein res subunit [Ktedonobacter racemifer
           DSM 44963]
 gi|297553148|gb|EFH87013.1| type III restriction protein res subunit [Ktedonobacter racemifer
           DSM 44963]
          Length = 463

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 9/82 (10%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  I+   R G++  LV   +L EG+D+P+C +  I+  +      +K   IQ +GR  
Sbjct: 382 ERRTILERFRSGQYTKLVTGRVLNEGVDVPDCRVAVIVSGNS-----TKREYIQRLGRVL 436

Query: 680 RNVNSKVILY----ADTITKSI 697
           R    + +LY    +DT  +S+
Sbjct: 437 RPKEGEALLYELVTSDTTEESV 458


>gi|291279604|ref|YP_003496439.1| ATP-dependent DNA recombinase RecG [Deferribacter desulfuricans
           SSM1]
 gi|290754306|dbj|BAI80683.1| ATP-dependent DNA recombinase RecG [Deferribacter desulfuricans
           SSM1]
          Length = 762

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H ++K+ E+ +++ D + GK  +LV   ++  G+D+ E  ++ I +A++ G     
Sbjct: 581 VTLLHGKMKSEEKKQVLHDFKYGKKSILVSTTVIEVGIDVTEATVIVIENAERFGL---- 636

Query: 669 TSLIQTIGRAARN 681
           + L Q  GR  RN
Sbjct: 637 SQLHQLRGRVGRN 649


>gi|219559266|ref|ZP_03538342.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T17]
          Length = 508

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ + + L ER   V  +H ++  L R + ++  R G  DVLV  ++   G+DI
Sbjct: 276 TKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDI 333


>gi|195124758|ref|XP_002006854.1| GI21295 [Drosophila mojavensis]
 gi|193911922|gb|EDW10789.1| GI21295 [Drosophila mojavensis]
          Length = 1728

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 15/113 (13%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I++ R G+ ++++  ++L EG+D+  C  V ILD      +++    +QT GRA     S
Sbjct: 455 IQEFRDGEANIMICSSVLEEGIDVQACNYVIILDP-----IKTFNMYVQTKGRARSKEAS 509

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
            +I+ +D           E  +   + L++ K H    + +K++++E  DP L
Sbjct: 510 FMIISSDL----------EKQKTSTQILQYRKAHADIGEYLKDRVLERADPQL 552


>gi|164657065|ref|XP_001729659.1| hypothetical protein MGL_3203 [Malassezia globosa CBS 7966]
 gi|159103552|gb|EDP42445.1| hypothetical protein MGL_3203 [Malassezia globosa CBS 7966]
          Length = 560

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +Q+  ++++   TKR A+DLT++L +       +H + +  ER  ++R+ + G   ++V 
Sbjct: 378 SQENGKVIIFTGTKRAADDLTKFLRQDGWPGLAIHGDKQQDERDWVLREFKSGNSPIMVA 437

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +   GLD+ +   V  +++D   F  +    I  IGR  R
Sbjct: 438 TAVASRGLDVKDISYV--INSD---FPTNTEDYIHQIGRTGR 474


>gi|221308280|ref|ZP_03590127.1| hypothetical protein Bsubs1_02593 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312602|ref|ZP_03594407.1| hypothetical protein BsubsN3_02569 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317526|ref|ZP_03598820.1| hypothetical protein BsubsJ_02533 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321802|ref|ZP_03603096.1| hypothetical protein BsubsS_02604 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321314132|ref|YP_004206419.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|134039178|sp|P96614|CSHA_BACSU RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|291482867|dbj|BAI83942.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020406|gb|ADV95392.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis BSn5]
          Length = 494

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L  R      +H ++   +R+  +R  + G  +VLV  ++   GLDI  
Sbjct: 250 TKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDI-- 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   + + + +     KS+  AI++TT+R+
Sbjct: 308 SGVTHVYNFD---VPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRK 363


>gi|90081060|dbj|BAE90010.1| unnamed protein product [Macaca fascicularis]
          Length = 407

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 282 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 341

Query: 651 CGLV 654
             LV
Sbjct: 342 VSLV 345


>gi|673433|emb|CAA40268.1| protein synthesis initiation factor 4A [Mus musculus]
 gi|15214821|gb|AAH12547.1| Eukaryotic translation initiation factor 4A, isoform 2 [Homo
           sapiens]
 gi|29126861|gb|AAH48105.1| Eukaryotic translation initiation factor 4A, isoform 2 [Homo
           sapiens]
 gi|119598580|gb|EAW78174.1| eukaryotic translation initiation factor 4A, isoform 2, isoform
           CRA_c [Homo sapiens]
          Length = 408

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 283 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 342

Query: 651 CGLV 654
             LV
Sbjct: 343 VSLV 346


>gi|3775987|emb|CAA09196.1| RNA helicase [Arabidopsis thaliana]
          Length = 748

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           S RT + D+   I + A+ G  I+ T  TKR A++++  L   +I    +H ++   +R 
Sbjct: 336 SKRTILSDL---ITVYAKGGKTIVFTQ-TKRDADEVSLAL-SNSIATEALHGDISQHQRE 390

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
             +   R GKF VLV  ++   GLDIP   LV
Sbjct: 391 RTLNAFRQGKFTVLVATDVASRGLDIPNVDLV 422


>gi|54297960|ref|YP_124329.1| ATP-dependent DNA helicase RecG [Legionella pneumophila str. Paris]
 gi|53751745|emb|CAH13167.1| ATP-dependent DNA helicase RecG [Legionella pneumophila str. Paris]
          Length = 690

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 6/90 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H  +K LE+   +   + G+ D+LV   ++  G+D+P   L+ I +A++ G    
Sbjct: 516 RVGLVHGRMKALEKEATMAAFKQGEIDLLVATTVIEVGVDVPNASLMIIENAERLGL--- 572

Query: 668 KTSLIQTIGRAARNVNSK--VILYADTITK 695
            + L Q  GR  R  N    ++LY   +++
Sbjct: 573 -SQLHQLRGRVGRGNNQSHCLLLYQSPLSQ 601


>gi|329889843|ref|ZP_08268186.1| DEAD/DEAH box helicase family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328845144|gb|EGF94708.1| DEAD/DEAH box helicase family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 696

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 14/120 (11%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AEDL +YL      V   H ++   ER  ++ +   G+  VLV   ++  G+D+P   ++
Sbjct: 502 AEDLRKYL---GTEVGLAHGQMPGAEREAVMAEFADGRLPVLVATTVVEVGVDVPNASIM 558

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTRRREKQL 712
            I  AD+ G       L Q  GR  R   +   ++LY          A+ ET + R + L
Sbjct: 559 VIEHADRFGL----AQLHQLRGRVGRGAKASACILLYGGE-----DGALGETAKERLETL 609


>gi|320166262|gb|EFW43161.1| ATP dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 633

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L  V TKR A+ L ++LY        +H +    ER + +R  R G   +LV   +   G
Sbjct: 436 LCFVETKRAADSLEDFLYHEGFPAASIHGDRSQREREDALRTFRSGHTPILVATAVAARG 495

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           LDIP    V   D   E         +  IGR  R  N
Sbjct: 496 LDIPNVKHVINYDLPTE-----IDEYVHRIGRTGRVGN 528


>gi|293366822|ref|ZP_06613498.1| DNA replication factor Y [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319123|gb|EFE59493.1| DNA replication factor Y [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329736673|gb|EGG72939.1| primosomal protein N' [Staphylococcus epidermidis VCU045]
          Length = 802

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +++ D   GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 594 KLLNDFEAGKGDILLGTQMIAKGLDYPNITLVGVLNADTMLNLPDFRASERTYQLLTQVS 653

Query: 676 GRAARN 681
           GRA R+
Sbjct: 654 GRAGRH 659


>gi|289571435|ref|ZP_06451662.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
           tuberculosis T17]
 gi|289545189|gb|EFD48837.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
           tuberculosis T17]
          Length = 489

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ + + L ER   V  +H ++  L R + ++  R G  DVLV  ++   G+DI
Sbjct: 279 TKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDI 336


>gi|156056669|ref|XP_001594258.1| hypothetical protein SS1G_04065 [Sclerotinia sclerotiorum 1980]
 gi|189082206|sp|A7EFH4|MPH1_SCLS1 RecName: Full=ATP-dependent DNA helicase mph1
 gi|154701851|gb|EDO01590.1| hypothetical protein SS1G_04065 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1235

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 30/167 (17%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++E IR  + G  +V+V  ++  EGLDI E  L+   D+       S   ++Q +GR  
Sbjct: 684 KQLETIRKFKAGGINVIVATSIGEEGLDIGEVDLIVCYDSSS-----SPIRMLQRMGRTG 738

Query: 680 RNVNSKVILY------ADTITKS------IQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           R    K++L        D+  KS      IQ  I   +R       H+    I P+ VK 
Sbjct: 739 RKRAGKIVLLLMRGKEEDSYKKSKDNYEQIQRMISSGSRF---TFRHDLSARIIPRKVKP 795

Query: 728 KIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH-LKSLRKQMHL 773
           ++ +    I LE         + Q  SL + K +A   K L K+ H+
Sbjct: 796 EVDKRFIEIPLE---------NTQDPSLPEPKRRAKPRKKLAKKFHM 833


>gi|148554437|ref|YP_001262019.1| transcription-repair coupling factor [Sphingomonas wittichii RW1]
 gi|148499627|gb|ABQ67881.1| transcription-repair coupling factor [Sphingomonas wittichii RW1]
          Length = 1195

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q++ +L  G+ V++  L + L    Y R D    +G + V G  +++FP+  E  A R+ 
Sbjct: 135 QLVARLAPGERVDRDRLAAMLQANGYIRTDTVTEQGEYAVRGSLVDLFPAG-EPHALRLD 193

Query: 352 MFGNDIEEISEF 363
            FG++IE + +F
Sbjct: 194 FFGDEIESVRQF 205


>gi|78486348|ref|YP_392273.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2]
 gi|78364634|gb|ABB42599.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
          Length = 574

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 11/153 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TK    +L E L  R      ++ +V   +R   +  L+ GK D+L+  +++  
Sbjct: 247 IIIFVRTKTATVELAEKLEARGYAAAALNGDVAQNQRERTVDQLKKGKLDILIATDVVAR 306

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  +   IL+     + +  +I+
Sbjct: 307 GLDVERISHVINYDIPYDNESYVHR----IGRTGRAGR--SGTAILFVAPRERRLLRSIE 360

Query: 703 ETTRRREKQLEHNKKHNINPQSV---KEKIMEV 732
            +T+++  Q+E      IN   +   K+KI++ 
Sbjct: 361 ASTKKKITQMELPTAQEINDSRITRFKDKIVDA 393


>gi|2137271|pir||I49638 probable RNA helicase protein - mouse (fragment)
 gi|286075|dbj|BAA03584.1| Drosophila vasa homologue [Mus musculus]
          Length = 637

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 456 RTMVFVETKKKADFIATFLCQEKISSTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 515

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADT 692
            GLDI     V   D        +    +  IGR  R  N+ + I + DT
Sbjct: 516 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDT 560


>gi|28900245|ref|NP_799900.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837460|ref|ZP_01990127.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260361632|ref|ZP_05774659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260880805|ref|ZP_05893160.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260896485|ref|ZP_05904981.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|260899501|ref|ZP_05907896.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|28808556|dbj|BAC61733.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749260|gb|EDM60045.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308089237|gb|EFO38932.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308092075|gb|EFO41770.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308109261|gb|EFO46801.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|308112745|gb|EFO50285.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 522

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 16/115 (13%)

Query: 553 GLVDPPVEIR------SARTQVEDVYD-EINLAAQQGLR---------ILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y  ++   A   ++         +L+   TK  A 
Sbjct: 198 GLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQVLVFTKTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
            L ++L E+N+    +H       R + + D + G+  VLV  ++   G+DIP+ 
Sbjct: 258 RLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAARGIDIPQL 312


>gi|313891693|ref|ZP_07825300.1| transcription-repair coupling factor [Dialister microaerophilus
           UPII 345-E]
 gi|313119971|gb|EFR43156.1| transcription-repair coupling factor [Dialister microaerophilus
           UPII 345-E]
          Length = 1126

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           M +D  E +++  +R+   +  +K  E  +++ D    K+D+L+   L+  GLD P    
Sbjct: 800 MMKDRLEKIFKGKVRIGVAYGRMKGSELEKVMFDFYQDKYDLLLCTTLIENGLDQPNANT 859

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARN 681
           + I DAD  G     + L Q  GR  R+
Sbjct: 860 IIIYDADFMGL----SQLYQMKGRVGRS 883


>gi|307257926|ref|ZP_07539680.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306863573|gb|EFM95502.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 693

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL   L   ++R+  +H  +K  E+ EI+ + +    D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLQRAL--PDLRIGLVHGRMKPQEKQEIMAEFKAANIDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I ++++ G       L Q  GR  R   +   V+LY   + K
Sbjct: 567 IENSERLGL----AQLHQLRGRVGRGATASHCVLLYKPPLGK 604


>gi|307246757|ref|ZP_07528825.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255741|ref|ZP_07537544.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307260193|ref|ZP_07541902.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306852332|gb|EFM84569.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306861301|gb|EFM93292.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865738|gb|EFM97617.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 693

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL   L   ++R+  +H  +K  E+ EI+ + +    D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLQRAL--PDLRIGLVHGRMKPQEKQEIMAEFKAANIDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I ++++ G       L Q  GR  R   +   V+LY   + K
Sbjct: 567 IENSERLGL----AQLHQLRGRVGRGATASHCVLLYKPPLGK 604


>gi|303252704|ref|ZP_07338866.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248898|ref|ZP_07530909.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648443|gb|EFL78637.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854593|gb|EFM86785.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 693

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL   L   ++R+  +H  +K  E+ EI+ + +    D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLQRAL--PDLRIGLVHGRMKPQEKQEIMAEFKAANIDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I ++++ G       L Q  GR  R   +   V+LY   + K
Sbjct: 567 IENSERLGL----AQLHQLRGRVGRGATASHCVLLYKPPLGK 604


>gi|166714782|gb|ABY88103.1| UvrB [Stenotrophomonas sp. ICB194]
          Length = 50

 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
           I++F   LE  A R+ +F  ++E+IS F PLT + +RN+    +Y  +H
Sbjct: 2   IDVFRGELESDALRMELFDGEVEKISMFDPLTAETLRNMHRFTVYPKTH 50


>gi|242822575|ref|XP_002487915.1| eukaryotic translation initiation factor 4, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218712836|gb|EED12261.1| eukaryotic translation initiation factor 4, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 397

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 272 TRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 331

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 332 VSLVINYDLPANRENYI 348


>gi|218548644|ref|YP_002382435.1| transcription-repair coupling factor [Escherichia fergusonii ATCC
           35469]
 gi|218356185|emb|CAQ88802.1| transcription-repair coupling factor [Escherichia fergusonii ATCC
           35469]
          Length = 1148

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G           + +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 G---------HALMMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
             D+ +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 -SDLPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 231 WR----------DAFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|160946735|ref|ZP_02093938.1| hypothetical protein PEPMIC_00693 [Parvimonas micra ATCC 33270]
 gi|158447119|gb|EDP24114.1| hypothetical protein PEPMIC_00693 [Parvimonas micra ATCC 33270]
          Length = 580

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 12/99 (12%)

Query: 587 LTVL---TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           LTV+   TK+M +DLT  L  R      +H ++K ++R  ++   R    D+LV  ++  
Sbjct: 243 LTVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNSTIDILVATDVAA 302

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            G+D+ +  LV   D   D E +       +  IGR AR
Sbjct: 303 RGIDVDDVDLVINYDMPQDVEYY-------VHRIGRTAR 334


>gi|16198386|gb|AAH15842.1| Eukaryotic translation initiation factor 4A, isoform 2 [Homo
           sapiens]
          Length = 407

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 282 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 341

Query: 651 CGLV 654
             LV
Sbjct: 342 VSLV 345


>gi|73621052|sp|Q4R4Y9|IF4A2_MACFA RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|67970988|dbj|BAE01836.1| unnamed protein product [Macaca fascicularis]
          Length = 408

 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 283 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 342

Query: 651 CGLV 654
             LV
Sbjct: 343 VSLV 346


>gi|332523459|ref|ZP_08399711.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314723|gb|EGJ27708.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 538

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILVATDVAARGLDISN 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              V   D       +   S +  IGR  R
Sbjct: 308 VTHVYNYD-----ITQDPESYVHRIGRTGR 332


>gi|332025289|gb|EGI65460.1| Putative ATP-dependent RNA helicase DDX17 [Acromyrmex echinatior]
          Length = 706

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +  ++G ++++ V TK+  +D+T+ +         +H +    ER  ++ + R GK  +L
Sbjct: 349 IGTERGSKMIIFVETKKKVDDITKTIKREGWSAISIHGDKSQPERDYVLSEFRNGKTMIL 408

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLD+ +   V   D     +  S    I  IGR  R
Sbjct: 409 VATDVAARGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGR 447


>gi|328552138|gb|AEB22630.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens TA208]
          Length = 494

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L  R      +H ++   +R+  +R  + G  +VLV  ++   GLDI  
Sbjct: 250 TKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDI-- 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   + + + +     KS+  AI++TT+R+
Sbjct: 308 SGVTHVYNFD---VPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRK 363


>gi|323967055|gb|EGB62481.1| transcription-repair coupling protein [Escherichia coli M863]
 gi|327253513|gb|EGE65151.1| transcription-repair coupling factor [Escherichia coli STEC_7v]
          Length = 1148

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G           + +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 G---------HALMMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
             D+ +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 -SDLPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 231 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282


>gi|319401494|gb|EFV89704.1| primosomal protein N' [Staphylococcus epidermidis FRI909]
          Length = 802

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +++ D   GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 594 KLLNDFEAGKGDILLGTQMIAKGLDYPNITLVGVLNADTMLNLPDFRASERTYQLLTQVS 653

Query: 676 GRAARN 681
           GRA R+
Sbjct: 654 GRAGRH 659


>gi|325296847|ref|NP_001191665.1| ATP-dependent RNA helicase DDX5 [Aplysia californica]
 gi|304441889|gb|ADM34180.1| ATP-dependent RNA helicase DDX5 [Aplysia californica]
          Length = 600

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+ V TKR A+D+   +      V  +H +    ER   + D R G+  +LV  ++  
Sbjct: 354 KTLIFVETKRKADDIARRMKRDGWPVLSIHGDKSQQERDWALNDFRNGRNPILVATDVAS 413

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +       +  IGR  R+ N+
Sbjct: 414 RGLDVEDIKFVINFD-----YPNCSEDYVHRIGRTGRSTNT 449


>gi|254572992|ref|XP_002493605.1| Essential ATP-dependent RNA helicase of the DEAD-box protein family
           [Pichia pastoris GS115]
 gi|238033404|emb|CAY71426.1| Essential ATP-dependent RNA helicase of the DEAD-box protein family
           [Pichia pastoris GS115]
 gi|328354565|emb|CCA40962.1| ATP-dependent RNA helicase DDX5/DBP2 [Pichia pastoris CBS 7435]
          Length = 537

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TKR  ++LT YL         +H + +  ER  ++++ R GK  ++V  ++  
Sbjct: 349 KILVFASTKRTCDELTTYLRSDGWPALAIHGDKEQRERDWVLQEFRSGKSPIMVATDVAA 408

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            G+D+   G+  +++ D  G +      I   GRA 
Sbjct: 409 RGIDVK--GINFVVNYDMPGNIEDYVHRIGRTGRAG 442


>gi|237797799|ref|ZP_04586260.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331020649|gb|EGI00706.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 691

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L+  L E  +RV  +H  +K +E+  I+ + + G   +LV   ++  G+D+P   L+ 
Sbjct: 507 EELSSALGE--VRVGLIHGRMKPVEKAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLMI 564

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 565 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 602


>gi|258652378|ref|YP_003201534.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258555603|gb|ACV78545.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
           44233]
          Length = 586

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL ++ T  TKR A  + E L ER      +H ++    R + +R  R GK DVLV
Sbjct: 295 ARGRGLTMVFT-RTKRTAAKVAEDLEERGFAAAAVHGDLGQGAREQALRAFRAGKVDVLV 353

Query: 638 GINLLREGLDI 648
             ++   G+D+
Sbjct: 354 ATDVAARGIDV 364


>gi|255036621|ref|YP_003087242.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254949377|gb|ACT94077.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 385

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 5/107 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + +QQ  ++L+ V   R A++L E L +  I    MHS+     R E +   + GK  VL
Sbjct: 244 IKSQQMKQVLVFVSATRTADNLVEKLKKNGIDAMAMHSKKSQGARTEALNKFKSGKLTVL 303

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           V  +L   G+DI     V   +       RS    +  IGR  R  N
Sbjct: 304 VATDLASRGIDIQFLPYVINFELP-----RSPKDYVHRIGRTGRAEN 345


>gi|226305684|ref|YP_002765644.1| ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
 gi|226184801|dbj|BAH32905.1| putative ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
          Length = 474

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ + + L ER   V  +H ++  + R + ++  R GK DVLV  ++   G+DI
Sbjct: 229 TKRTAQKVADDLAERGFSVGAVHGDLGQIAREKALKGFRNGKVDVLVATDVAARGIDI 286


>gi|223590193|sp|A5DLE0|DBP8_PICGU RecName: Full=ATP-dependent RNA helicase DBP8
 gi|190347673|gb|EDK39993.2| hypothetical protein PGUG_04091 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 433

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE L   L + +IRV  +HSE+   ER   +   R G   VL+  ++   GLDIP   LV
Sbjct: 266 AEILRRTLRKLDIRVASLHSEMPQSERTNSLHRFRAGAARVLIATDVASRGLDIPNVELV 325

Query: 655 AILD--ADKEGFLRSKTSLIQTIGRAAR 680
              D  AD + +       I  +GR AR
Sbjct: 326 VNQDIPADPDDY-------IHRVGRTAR 346


>gi|171743238|ref|ZP_02919045.1| hypothetical protein BIFDEN_02367 [Bifidobacterium dentium ATCC
           27678]
 gi|283455784|ref|YP_003360348.1| transcription-repair coupling factor [Bifidobacterium dentium Bd1]
 gi|171278852|gb|EDT46513.1| hypothetical protein BIFDEN_02367 [Bifidobacterium dentium ATCC
           27678]
 gi|283102418|gb|ADB09524.1| Transcription-repair coupling factor [Bifidobacterium dentium Bd1]
          Length = 1173

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 32/163 (19%)

Query: 222 VEYFVSYY-----DYYQPEAY--------VPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           VE   S+Y     D  Q EA+         PR DT   + +       R++H    + + 
Sbjct: 73  VEAIRSWYGGDPQDVAQLEAWETLPHERLSPRADTVASRMAVFR----RLKHPEEGNAMF 128

Query: 269 RNDCIVVSSV-----SCIYGIGSVES--YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
               I+V  V       + G+G +E   ++Q       G+ +   E    LV+  Y R D
Sbjct: 129 GPIRILVMPVRSLIQPVVAGLGDIEPLVFTQ-------GEELALDEASKRLVESAYTRVD 181

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + + RG F V G  I++FP  L     R+  FG++I+ I +F+
Sbjct: 182 LVMDRGEFAVRGGIIDVFPPTLPHPV-RIEFFGDEIDAIKQFH 223


>gi|168828898|gb|ACA33927.1| vasa [Salvelinus leucomaenis]
          Length = 662

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 480 RTMVFVETKRQADFIATFLCQEKVNTTSIHGDREQREREQALGDFRSGKCPVLVATSVAA 539

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI +   +   D        +    +  IGR  R  N+ + + + D
Sbjct: 540 RGLDIKDVQHIVNFD-----LPNNIDEYVHRIGRTGRCGNTGRAVCFFD 583


>gi|167623544|ref|YP_001673838.1| transcription-repair coupling factor [Shewanella halifaxensis
           HAW-EB4]
 gi|167353566|gb|ABZ76179.1| transcription-repair coupling factor [Shewanella halifaxensis
           HAW-EB4]
          Length = 1157

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 60/311 (19%), Positives = 121/311 (38%), Gaps = 36/311 (11%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            + S +  Q L  ++G+ +  T+A + +  Q   +V+  +   A  L +E        ++
Sbjct: 11  AVKSAKLAQTLCTLSGAAQALTIANIAKQHQGVTLVVTADTPNAIGLEAELSYLLSEQSI 70

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                      P    P  +T      S ++ +   R  A   + +    +V+  V+ + 
Sbjct: 71  -----------PIWLFPDRETLPYDSFSPHQDLVSQRLEALSRIPQAQQSVVIVPVTTLM 119

Query: 283 GIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                +S+ +  ++ L+ GD     ++   L+   Y   +     G F V G  I+IFP 
Sbjct: 120 VRLPPQSFLTGNVLMLEKGDKYRLLDVREQLINTGYHVVEQVYEHGEFAVRGSIIDIFPM 179

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
                 +R+ +F +++E I  F P T +  + +  I++     +    PT + A++  ++
Sbjct: 180 G-SSQPFRIELFDDEVETIRNFDPETQRSSKEINAIRLLPAKEF----PTDDAAIEGFRQ 234

Query: 402 ELKMRLIELEKE-GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
             + R   L KE G +              +M+        IENY              T
Sbjct: 235 RYRRRFEVLVKEPGSI-------------YQMVSKKTMPAGIENYLPLFFDET-----AT 276

Query: 461 LFEYIPEDSLL 471
           LF+Y+P+ + L
Sbjct: 277 LFDYLPDSTQL 287


>gi|158259929|dbj|BAF82142.1| unnamed protein product [Homo sapiens]
          Length = 406

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G    L+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRALITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|114590950|ref|XP_001155683.1| PREDICTED: eukaryotic translation initiation factor 4A isoform 2
           [Pan troglodytes]
          Length = 369

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 291 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 350

Query: 651 CGLV 654
             LV
Sbjct: 351 VSLV 354


>gi|86606133|ref|YP_474896.1| primosome assembly protein PriA [Synechococcus sp. JA-3-3Ab]
 gi|86554675|gb|ABC99633.1| primosomal protein N' [Synechococcus sp. JA-3-3Ab]
          Length = 797

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 11/68 (16%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL---------RSKTSLIQ 673
           +++   R GK  VLVG  +L +GLDIP+  LV ++ AD  G L         R+   L Q
Sbjct: 592 DLLEQFRSGKAQVLVGTQMLTKGLDIPQVTLVGVVAAD--GLLHQPDYRAGERTFQLLTQ 649

Query: 674 TIGRAARN 681
             GRA R 
Sbjct: 650 VAGRAGRG 657


>gi|79328737|ref|NP_001031943.1| emb1138 (embryo defective 1138); ATP binding / ATP-dependent
           helicase/ RNA binding / helicase/ nucleic acid binding /
           zinc ion binding [Arabidopsis thaliana]
 gi|108861893|sp|Q8L7S8|RH3_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
           AltName: Full=Protein EMBRYO DEFECTIVE 1138; Flags:
           Precursor
 gi|19347898|gb|AAL85971.1| unknown protein [Arabidopsis thaliana]
 gi|20259537|gb|AAM13888.1| unknown protein [Arabidopsis thaliana]
 gi|20453225|gb|AAM19851.1| At5g26752 [Arabidopsis thaliana]
 gi|21689779|gb|AAM67533.1| unknown protein [Arabidopsis thaliana]
 gi|23397145|gb|AAN31856.1| unknown protein [Arabidopsis thaliana]
 gi|25090432|gb|AAN72300.1| At5g26752/At5g26752 [Arabidopsis thaliana]
 gi|27311701|gb|AAO00816.1| Unknown protein [Arabidopsis thaliana]
 gi|110739485|dbj|BAF01652.1| hypothetical protein [Arabidopsis thaliana]
 gi|332006182|gb|AED93565.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
          Length = 748

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           S RT + D+   I + A+ G  I+ T  TKR A++++  L   +I    +H ++   +R 
Sbjct: 336 SKRTILSDL---ITVYAKGGKTIVFTQ-TKRDADEVSLAL-SNSIATEALHGDISQHQRE 390

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
             +   R GKF VLV  ++   GLDIP   LV
Sbjct: 391 RTLNAFRQGKFTVLVATDVASRGLDIPNVDLV 422


>gi|30690260|ref|NP_680225.2| emb1138 (embryo defective 1138); ATP binding / ATP-dependent
           helicase/ RNA binding / helicase/ nucleic acid binding /
           zinc ion binding [Arabidopsis thaliana]
 gi|20856975|gb|AAM26693.1| At5g26743 [Arabidopsis thaliana]
 gi|28416497|gb|AAO42779.1| At5g26743 [Arabidopsis thaliana]
 gi|332006181|gb|AED93564.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
          Length = 747

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           S RT + D+   I + A+ G  I+ T  TKR A++++  L   +I    +H ++   +R 
Sbjct: 336 SKRTILSDL---ITVYAKGGKTIVFTQ-TKRDADEVSLAL-SNSIATEALHGDISQHQRE 390

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
             +   R GKF VLV  ++   GLDIP   LV
Sbjct: 391 RTLNAFRQGKFTVLVATDVASRGLDIPNVDLV 422


>gi|73621050|sp|Q4R8K5|IF4A1_MACFA RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|67968411|dbj|BAE00567.1| unnamed protein product [Macaca fascicularis]
          Length = 406

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+     MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTASAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|56605748|ref|NP_001008336.1| eukaryotic initiation factor 4A-II [Rattus norvegicus]
 gi|77404209|ref|NP_001029216.1| eukaryotic initiation factor 4A-II [Bos taurus]
 gi|83700235|ref|NP_001958.2| eukaryotic initiation factor 4A-II [Homo sapiens]
 gi|154147698|ref|NP_001093665.1| eukaryotic initiation factor 4A-II [Sus scrofa]
 gi|176865892|ref|NP_038534.2| eukaryotic initiation factor 4A-II isoform a [Mus musculus]
 gi|197098908|ref|NP_001126879.1| eukaryotic initiation factor 4A-II [Pongo abelii]
 gi|307548907|ref|NP_001182590.1| eukaryotic translation initiation factor 4A2 [Macaca mulatta]
 gi|55621670|ref|XP_516936.1| PREDICTED: eukaryotic initiation factor 4A-II isoform 11 [Pan
           troglodytes]
 gi|74003468|ref|XP_545242.2| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 2 [Canis familiaris]
 gi|194222679|ref|XP_001498096.2| PREDICTED: similar to Eukaryotic initiation factor 4A-II
           (ATP-dependent RNA helicase eIF4A-2) (eIF4A-II)
           (eIF-4A-II) [Equus caballus]
 gi|291400269|ref|XP_002716499.1| PREDICTED: eukaryotic translation initiation factor 4A, isoform 2
           [Oryctolagus cuniculus]
 gi|301758024|ref|XP_002914858.1| PREDICTED: eukaryotic initiation factor 4A-II-like [Ailuropoda
           melanoleuca]
 gi|2507330|sp|P10630|IF4A2_MOUSE RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|45645183|sp|Q14240|IF4A2_HUMAN RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|73621053|sp|Q5R4X1|IF4A2_PONAB RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|81889423|sp|Q5RKI1|IF4A2_RAT RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|109892472|sp|Q3SZ65|IF4A2_BOVIN RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|673434|emb|CAA40269.1| protein synthesis initiation factor 4A [Mus musculus]
 gi|15489200|gb|AAH13708.1| Eukaryotic translation initiation factor 4A, isoform 2 [Homo
           sapiens]
 gi|26345442|dbj|BAC36372.1| unnamed protein product [Mus musculus]
 gi|32880063|gb|AAP88862.1| eukaryotic translation initiation factor 4A, isoform 2 [Homo
           sapiens]
 gi|55716055|gb|AAH85859.1| Eukaryotic translation initiation factor 4A2 [Rattus norvegicus]
 gi|55733019|emb|CAH93195.1| hypothetical protein [Pongo abelii]
 gi|61359891|gb|AAX41782.1| eukaryotic translation initiation factor 4A isoform 2 [synthetic
           construct]
 gi|62969091|gb|AAH94422.1| Eukaryotic translation initiation factor 4A2 [Mus musculus]
 gi|74267868|gb|AAI03107.1| Eukaryotic translation initiation factor 4A, isoform 2 [Bos taurus]
 gi|85792276|gb|ABC84195.1| eukaryotic translation initiation factor 4A isoform 2 [Sus scrofa]
 gi|119598578|gb|EAW78172.1| eukaryotic translation initiation factor 4A, isoform 2, isoform
           CRA_a [Homo sapiens]
 gi|119598583|gb|EAW78177.1| eukaryotic translation initiation factor 4A, isoform 2, isoform
           CRA_a [Homo sapiens]
 gi|123981670|gb|ABM82664.1| eukaryotic translation initiation factor 4A, isoform 2 [synthetic
           construct]
 gi|123996477|gb|ABM85840.1| eukaryotic translation initiation factor 4A, isoform 2 [synthetic
           construct]
 gi|148665242|gb|EDK97658.1| eukaryotic translation initiation factor 4A2, isoform CRA_d [Mus
           musculus]
 gi|149019926|gb|EDL78074.1| eukaryotic translation initiation factor 4A2, isoform CRA_a [Rattus
           norvegicus]
 gi|296491283|gb|DAA33346.1| eukaryotic initiation factor 4A-II [Bos taurus]
 gi|307684696|dbj|BAJ20388.1| eukaryotic translation initiation factor 4A, isoform 2 [synthetic
           construct]
 gi|227239|prf||1617105C initiation factor 4AII
          Length = 407

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 282 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 341

Query: 651 CGLV 654
             LV
Sbjct: 342 VSLV 345


>gi|116490833|ref|YP_810377.1| replication restart DNA helicase PriA [Oenococcus oeni PSU-1]
 gi|290890278|ref|ZP_06553357.1| hypothetical protein AWRIB429_0747 [Oenococcus oeni AWRIB429]
 gi|116091558|gb|ABJ56712.1| replication restart DNA helicase PriA [Oenococcus oeni PSU-1]
 gi|290480064|gb|EFD88709.1| hypothetical protein AWRIB429_0747 [Oenococcus oeni AWRIB429]
          Length = 803

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 27/38 (71%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           +I+RD   G +DVL+G  ++ +GLD P+  LV +++AD
Sbjct: 596 KILRDFGKGNYDVLLGTQMVAKGLDFPDVTLVGVINAD 633


>gi|332193686|gb|AEE31807.1| fanconi anemia group M protein [Arabidopsis thaliana]
          Length = 1390

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++   R G F+V+V  ++  EGLDI E  LV   DA+      S   +IQ +GR  R  N
Sbjct: 519 VLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANV-----SPLRMIQRMGRTGRKNN 573

Query: 684 SKVIL 688
            + +L
Sbjct: 574 GRPLL 578


>gi|323971097|gb|EGB66344.1| srmB protein [Escherichia coli TA007]
          Length = 207

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +VL
Sbjct: 6   LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 65

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR AR
Sbjct: 66  VATDVAARGIDIPDVSHVFNFD-----MPRSGDTYLHRIGRTAR 104


>gi|313619814|gb|EFR91407.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
           S4-378]
          Length = 518

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV  ++   GLDI  
Sbjct: 251 TKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI-- 308

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R       I +           ++ETT++R 
Sbjct: 309 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRM 365

Query: 710 KQLE 713
           + L+
Sbjct: 366 QPLQ 369


>gi|239611619|gb|EEQ88606.1| ATP-dependent RNA helicase ded1 [Ajellomyces dermatitidis ER-3]
 gi|327348365|gb|EGE77222.1| ATP-dependent RNA helicase DED1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 692

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L+++L +  +    +H +    ER   +   R G+  +LV   +   G
Sbjct: 461 LVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTGRCPILVATAVAARG 520

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           LDIP    V   D   E         +  IGR  R  N+ +     + +K+ ++A
Sbjct: 521 LDIPNVTHVINYDLPNE-----IDDYVHRIGRTGRAGNTGISTAFFSRSKNFKIA 570


>gi|165977264|ref|YP_001652857.1| ATP-dependent DNA helicase RecG [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165877365|gb|ABY70413.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 693

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL   L   ++R+  +H  +K  E+ EI+ + +    D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLQRAL--PDLRIGLVHGRMKPQEKQEIMAEFKAANIDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I ++++ G       L Q  GR  R   +   V+LY   + K
Sbjct: 567 IENSERLGL----AQLHQLRGRVGRGATASHCVLLYKPPLGK 604


>gi|121705144|ref|XP_001270835.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           clavatus NRRL 1]
 gi|134034143|sp|A1CJT5|IF4A_ASPCL RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|119398981|gb|EAW09409.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           clavatus NRRL 1]
          Length = 398

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 273 TRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 332

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 333 VSLVINYDLPANRENYI 349


>gi|116626979|ref|YP_819598.1| transcription-repair coupling factor [Streptococcus thermophilus
           LMD-9]
 gi|116100256|gb|ABJ65402.1| Transcription-repair coupling factor (superfamily II helicase)
           [Streptococcus thermophilus LMD-9]
 gi|312277424|gb|ADQ62081.1| Transcription-repair coupling factor (Superfamily II helicase)
           [Streptococcus thermophilus ND03]
          Length = 1168

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 68/350 (19%), Positives = 138/350 (39%), Gaps = 48/350 (13%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF----- 225
           QL++G +GS K   MA  +        ++   +  A QL  +       + V  F     
Sbjct: 28  QLVMGFSGSSKAVAMASALSNQVPKIFIVTSTQNEAEQLVGDLSAILGEDKVYSFFADDV 87

Query: 226 -VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
             + + +  PE    +T + +E   S+N  +D           E +  +V S V     +
Sbjct: 88  SAAEFIFASPE----KTHSRLE---SLNFLMDE----------EASGVLVTSLVGTKLHL 130

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
            +   Y    + L +G   +   L   L    Y+R +  +  G F   GD ++I+    E
Sbjct: 131 PNPRVYKDSRIDLVLGKEHDLDALSRHLTHIGYQRVEQVLSPGEFSRRGDILDIYELTAE 190

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            + +R+  FG++I+ I +F   + + + N+E + I      +  R     A K +     
Sbjct: 191 -LPYRLEFFGDEIDGIRQFDSDSQKSLNNLEHVVISPADDIILTREDYQRAEKAL----- 244

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   E  +  A  L +   Y  E+L  T      ++  ++L+     +   TLF+Y
Sbjct: 245 --------ESAISRADGLHK--AYLEEVLSVTIDGHRHKDLRKFLSLFY--DKAYTLFDY 292

Query: 465 IPEDSLLFVDESHVTIP-------QISGMYRGDFHRKATLAEYGFRLPSC 507
           +P+ + +F+D+    +        +++ +   D H+  +L+   + + S 
Sbjct: 293 LPKGTPVFIDDFQKIVDRHGRLELEVANLLTEDLHQGKSLSHLNYFVDSF 342



 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+ ++H ++  +     + D   G +D+LV   ++  G+DIP    + I +AD  G    
Sbjct: 850 RIGFVHGQMSEVMLENTLLDFLNGDYDILVATTIIETGIDIPNVNTLLIENADHMGL--- 906

Query: 668 KTSLIQTIGRAARNVNSKVILYA 690
            ++L Q  GR  R   S  I YA
Sbjct: 907 -STLYQLRGRVGR---SNRIAYA 925


>gi|313473099|ref|ZP_07813583.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           jensenii 1153]
 gi|313448798|gb|EEQ67665.2| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           jensenii 1153]
          Length = 415

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   +++T YL ++ +RV  +H  +   ER   +R +R G F  +V  +L   G+DI  
Sbjct: 216 TKTKVDEITSYLQDQGLRVAKIHGGITERERKRTLRLVRQGDFQYVVATDLAARGIDIDG 275

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +  K+        +I  IGR  RN
Sbjct: 276 VSLVINYELPKD-----LEFVIHRIGRTGRN 301


>gi|289614471|emb|CBI58755.1| unnamed protein product [Sordaria macrospora]
          Length = 1365

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +   R G+F++LV  N+L EG+D+P C LV   D        +  S IQ  GRA +  ++
Sbjct: 480 LEGFREGRFNLLVATNVLEEGIDVPICNLVICFDKPS-----NIKSFIQRRGRARKGSST 534

Query: 685 KVILYADTITKS 696
             ++  D   +S
Sbjct: 535 LYLMVQDASGES 546


>gi|253741975|gb|EES98832.1| Translation initiation factor eIF-4A, putative [Giardia
           intestinalis ATCC 50581]
          Length = 391

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 10/113 (8%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           VED+Y    L+ QQG+ I    + +   ++L E L      +  +HSE+   ER +I+ +
Sbjct: 248 VEDIYKV--LSVQQGV-IFCNSIAR--VKELAEKLKSAGHTISCIHSELDQAERNKIMGE 302

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            R G+  +L+  N++  G+D+    LV   D  +E       + +  IGR+ R
Sbjct: 303 FRSGQTRILIATNIIARGIDVQNVSLVINYDIPREA-----ETYLHRIGRSGR 350


>gi|251810643|ref|ZP_04825116.1| DNA replication factor Y [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876355|ref|ZP_06285222.1| primosomal protein N' [Staphylococcus epidermidis SK135]
 gi|251805803|gb|EES58460.1| DNA replication factor Y [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295380|gb|EFA87907.1| primosomal protein N' [Staphylococcus epidermidis SK135]
          Length = 802

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +++ D   GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 594 KLLNDFEAGKGDILLGTQMIAKGLDYPNITLVGVLNADTMLNLPDFRASERTYQLLTQVS 653

Query: 676 GRAARN 681
           GRA R+
Sbjct: 654 GRAGRH 659


>gi|242242495|ref|ZP_04796940.1| DNA replication factor Y [Staphylococcus epidermidis W23144]
 gi|242234069|gb|EES36381.1| DNA replication factor Y [Staphylococcus epidermidis W23144]
          Length = 802

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +++ D   GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 594 KLLNDFEAGKGDILLGTQMIAKGLDYPNITLVGVLNADTMLNLPDFRASERTYQLLTQVS 653

Query: 676 GRAARN 681
           GRA R+
Sbjct: 654 GRAGRH 659


>gi|238854499|ref|ZP_04644837.1| cold-shock DEAD box protein A [Lactobacillus jensenii 269-3]
 gi|260664817|ref|ZP_05865668.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           SJ-7A-US]
 gi|282934107|ref|ZP_06339386.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|313472627|ref|ZP_07813116.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           jensenii 1153]
 gi|238832852|gb|EEQ25151.1| cold-shock DEAD box protein A [Lactobacillus jensenii 269-3]
 gi|239529420|gb|EEQ68421.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           jensenii 1153]
 gi|260561300|gb|EEX27273.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301854|gb|EFA94119.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
          Length = 484

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++   +R+ +++  + GK D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKNGKLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            G+  + + D      S    I   GRA +N
Sbjct: 306 SGVTHVYNYDIPQDPDSYVHRIGRTGRAGKN 336


>gi|212537643|ref|XP_002148977.1| ATP dependent RNA helicase (Dbp1), putative [Penicillium marneffei
           ATCC 18224]
 gi|210068719|gb|EEA22810.1| ATP dependent RNA helicase (Dbp1), putative [Penicillium marneffei
           ATCC 18224]
          Length = 692

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L ++L  +N     +H +    ER   +   R  +  +LV   +   G
Sbjct: 462 LIFVETKRMADSLCDFLINQNFPATAIHGDRTQRERERALEMFRNARCPILVATAVAARG 521

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 522 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNTGI 557


>gi|194216574|ref|XP_001490317.2| PREDICTED: similar to Eukaryotic initiation factor 4A-III
           (Eukaryotic translation initiation factor 4A isoform 3)
           (ATP-dependent RNA helicase eIF4A-3) (ATP-dependent RNA
           helicase DDX48) (DEAD box protein 48) (Eukaryotic
           initiation factor 4A-like NUK-34) (Nucl [Equus caballus]
          Length = 375

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTE + E N  V  MH ++   ER  I+++ R G   VL+  ++   GLD+P+  L+   
Sbjct: 257 LTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY 316

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
           D        ++   I  IGR+ R
Sbjct: 317 D-----LPNNRELYIHRIGRSGR 334


>gi|222480951|ref|YP_002567188.1| ERCC4 domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222453853|gb|ACM58118.1| ERCC4 domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 836

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 24/149 (16%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE--------VKTLERIEIIRD 627
            L   +G R +L   ++  AE L E+L   +  VR    +        +   ++ E + +
Sbjct: 363 TLGINEGERAILFTESRDTAEALVEFL-STSFDVRKFVGQGDKEGSDGMSQKQQQETLDE 421

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + G F+VLV  ++  EGLD+PE  LV   +      + +    IQ  GR  R    KV+
Sbjct: 422 FKAGDFEVLVSTSVAEEGLDVPEVDLVCFYEP-----VPTAIRSIQRKGRTGRQAEGKVV 476

Query: 688 LYADTITKSIQLAIDET----TRRREKQL 712
           +     T+      DE     +RRREK++
Sbjct: 477 VLMAEDTR------DEAFFWISRRREKKM 499


>gi|145502420|ref|XP_001437188.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404337|emb|CAK69791.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           +K+  +DL + L      V  +HS+++  ER +++++ + G   +LV  +L+  G+D+ +
Sbjct: 266 SKKTVDDLHDKLTAEGFTVSKIHSQMEQKEREQVMQEFKKGAARILVSTDLMGRGIDVQQ 325

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   +     F R K   I  +GRA R
Sbjct: 326 LSLVINYE-----FPRLKEQYIHRVGRAGR 350


>gi|327282024|ref|XP_003225744.1| PREDICTED: eukaryotic initiation factor 4A-II-like [Anolis
           carolinensis]
          Length = 406

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|314933387|ref|ZP_07840752.1| primosomal protein N' [Staphylococcus caprae C87]
 gi|313653537|gb|EFS17294.1| primosomal protein N' [Staphylococcus caprae C87]
          Length = 802

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +++ D   GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 594 KLLNDFEAGKGDILLGTQMIAKGLDYPNITLVGVLNADTMLNLPDFRASERTYQLLTQVS 653

Query: 676 GRAARN 681
           GRA R+
Sbjct: 654 GRAGRH 659


>gi|261204854|ref|XP_002627164.1| ATP-dependent RNA helicase ded1 [Ajellomyces dermatitidis SLH14081]
 gi|239592223|gb|EEQ74804.1| ATP-dependent RNA helicase ded1 [Ajellomyces dermatitidis SLH14081]
          Length = 692

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L+++L +  +    +H +    ER   +   R G+  +LV   +   G
Sbjct: 461 LVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTGRCPILVATAVAARG 520

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           LDIP    V   D   E         +  IGR  R  N+ +     + +K+ ++A
Sbjct: 521 LDIPNVTHVINYDLPNE-----IDDYVHRIGRTGRAGNTGISTAFFSRSKNFKIA 570


>gi|223043911|ref|ZP_03613952.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus capitis SK14]
 gi|314934151|ref|ZP_07841512.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
 gi|222442626|gb|EEE48730.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus capitis SK14]
 gi|313653056|gb|EFS16817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
          Length = 511

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 336


>gi|145500870|ref|XP_001436418.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124403557|emb|CAK69021.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           +K+  +DL + L      V  +HS+++  ER +++++ + G   +LV  +L+  G+D+ +
Sbjct: 266 SKKTVDDLHDKLTAEGFTVSKIHSQMEQKEREQVMQEFKKGAARILVSTDLMGRGIDVQQ 325

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   +     F R K   I  +GRA R
Sbjct: 326 LSLVINYE-----FPRLKEQYIHRVGRAGR 350


>gi|27467806|ref|NP_764443.1| PriA,primosomal protein [Staphylococcus epidermidis ATCC 12228]
 gi|27315350|gb|AAO04485.1|AE016746_275 PriA ,primosomal protein [Staphylococcus epidermidis ATCC 12228]
 gi|329730018|gb|EGG66409.1| primosomal protein N' [Staphylococcus epidermidis VCU144]
 gi|329736191|gb|EGG72463.1| primosomal protein N' [Staphylococcus epidermidis VCU028]
          Length = 802

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +++ D   GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 594 KLLNDFEAGKGDILLGTQMIAKGLDYPNITLVGVLNADTMLNLPDFRASERTYQLLTQVS 653

Query: 676 GRAARN 681
           GRA R+
Sbjct: 654 GRAGRH 659


>gi|328470214|gb|EGF41125.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus 10329]
          Length = 522

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 16/115 (13%)

Query: 553 GLVDPPVEIR------SARTQVEDVYD-EINLAAQQGLR---------ILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y  ++   A   ++         +L+   TK  A 
Sbjct: 198 GLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQVLVFTKTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
            L ++L E+N+    +H       R + + D + G+  VLV  ++   G+DIP+ 
Sbjct: 258 RLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAARGIDIPQL 312


>gi|318079420|ref|ZP_07986752.1| putative ATP-dependent RNA helicase [Streptomyces sp. SA3_actF]
          Length = 461

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL +++   TKR A D++E L  R      +H ++    R + +R  R GK DVLV
Sbjct: 212 AEGRGL-VMIFCRTKRTAADISEQLQRRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLV 270

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             ++   G+D+   G+  +++       ++    I   GRA R+  +  ++  D I +
Sbjct: 271 CTDVAARGIDVE--GVTHVINYQTPEDEKTYLHRIGRTGRAGRSGTAVTLVDWDDIPR 326


>gi|306823175|ref|ZP_07456551.1| transcription-repair coupling factor [Bifidobacterium dentium ATCC
           27679]
 gi|309801612|ref|ZP_07695733.1| transcription-repair coupling factor [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553807|gb|EFM41718.1| transcription-repair coupling factor [Bifidobacterium dentium ATCC
           27679]
 gi|308221744|gb|EFO78035.1| transcription-repair coupling factor [Bifidobacterium dentium
           JCVIHMP022]
          Length = 1173

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 32/163 (19%)

Query: 222 VEYFVSYY-----DYYQPEAY--------VPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           VE   S+Y     D  Q EA+         PR DT   + +       R++H    + + 
Sbjct: 73  VEAIRSWYGGDPQDVAQLEAWETLPHERLSPRADTVASRMAVFR----RLKHPEEGNAMF 128

Query: 269 RNDCIVVSSV-----SCIYGIGSVES--YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
               I+V  V       + G+G +E   ++Q       G+ +   E    LV+  Y R D
Sbjct: 129 GPIRILVMPVRSLIQPVVAGLGDIEPLVFTQ-------GEELALDEASKRLVESAYTRVD 181

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + + RG F V G  I++FP  L     R+  FG++I+ I +F+
Sbjct: 182 LVMDRGEFAVRGGIIDVFPPTLPHPV-RIEFFGDEIDAIKQFH 223


>gi|256852006|ref|ZP_05557393.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           27-2-CHN]
 gi|260661425|ref|ZP_05862338.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           115-3-CHN]
 gi|282931887|ref|ZP_06337366.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|297205122|ref|ZP_06922518.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           jensenii JV-V16]
 gi|256615418|gb|EEU20608.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           27-2-CHN]
 gi|260547880|gb|EEX23857.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           115-3-CHN]
 gi|281303998|gb|EFA96121.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|297149700|gb|EFH29997.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           jensenii JV-V16]
          Length = 484

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++   +R+ +++  + GK D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKNGKLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            G+  + + D      S    I   GRA +N
Sbjct: 306 SGVTHVYNYDIPQDPDSYVHRIGRTGRAGKN 336


>gi|221234483|ref|YP_002516919.1| DEAD-box RNA helicase-like protein [Caulobacter crescentus NA1000]
 gi|220963655|gb|ACL95011.1| DEAD-box RNA helicase-like protein [Caulobacter crescentus NA1000]
          Length = 741

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 23/177 (12%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+   T+     +   L ER   V  +  E+   ER + ++ LR G   V V  ++   G
Sbjct: 247 LVFANTRESVRSMHAKLRERGFAVVGLSGELSQRERADALQALRDGHARVCVATDVAARG 306

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P+ GLV   +        +K +L+   GR  R     V            L +  T 
Sbjct: 307 LDLPDLGLVIHAE-----LPINKATLLHRSGRTGRAGKKGVSA----------LVVPYTR 351

Query: 706 RRREKQL------EHNKKHNINPQSVKEKIMEVI--DPILLEDAATTNISIDAQQLS 754
           RR+ +QL      E +     +  S++EK  E +  DPI  E +   ++++    L+
Sbjct: 352 RRKAEQLLYAAGVEADWGGAPSADSIREKDQERLLEDPIFSEASTEEDVALAEAMLA 408


>gi|110639820|ref|YP_680030.1| transcription-repair coupling factor [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282501|gb|ABG60687.1| transcription-repair coupling factor [Cytophaga hutchinsonii ATCC
           33406]
          Length = 1122

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 8/106 (7%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV + H +++  +  E++     G++DVLV  N++  GLDIP    + I  A   G    
Sbjct: 796 RVTFAHGQMEGDKLEEVMLKFVEGEYDVLVSTNIIESGLDIPNANTIIINSAHMFGL--- 852

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
            + L Q  GR  R+ N K   Y   +T S+  A+   +R+R   LE
Sbjct: 853 -SDLHQMRGRVGRS-NKKAFCY--LLTPSVS-ALTGDSRKRLSVLE 893



 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           +IG+ + ++ +   L    ++R D     G + + G  I+IF S+  ++ +R+ +FG +I
Sbjct: 147 RIGEKLNREFMEEFLQSYGFERTDFVYEAGQYAIRGGIIDIF-SYANELPFRIELFGTEI 205

Query: 358 EEISEFYPLTGQKIRNVETIKIYAN 382
           E I  F P +   + N+  + I  N
Sbjct: 206 ESIRTFNPESQLSVDNIPVLSITPN 230


>gi|4490563|emb|CAB38639.1| RNA helicase [Plasmodium falciparum]
          Length = 180

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 37/70 (52%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           + G  +L+    K+  +D+ EYL  + +    +H  +   ER E I   R GK D+LVG 
Sbjct: 89  KTGPPVLIFCENKKDVDDVHEYLLLKGVNAVAIHGNLGQSERQEAINLFREGKKDILVGT 148

Query: 640 NLLREGLDIP 649
           ++  +GLD P
Sbjct: 149 DVASKGLDFP 158


>gi|311693200|gb|ADP96073.1| DNA helicase, ATP-dependent, RecG [marine bacterium HP15]
          Length = 691

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 16/133 (12%)

Query: 569 EDVYDEINLAAQQGLRILLT--------VLTKRMAEDLTEYLYER--NIRVRYMHSEVKT 618
           EDV + +  A ++G +             L  + AE   + L ER  +++V  +H  +K 
Sbjct: 469 EDVIERVRGACREGRQAYWVCTLIEESEALQCQAAEVTAQELAERLPDLKVGLVHGRLKA 528

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            E+  ++   ++G+ D+LV   ++  G+D+P   L+ I + ++ G       L Q  GR 
Sbjct: 529 QEKAAVMEQFKVGELDLLVATTVIEVGVDVPNASLIIIENPERLGL----AQLHQLRGRV 584

Query: 679 ARNVNSK--VILY 689
            R   +   V++Y
Sbjct: 585 GRGEQASFCVLMY 597


>gi|307183175|gb|EFN70084.1| Probable ATP-dependent RNA helicase DDX17 [Camponotus floridanus]
          Length = 705

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +  ++G ++++ V TK+  +D+T+ +         +H +    ER  ++ + R GK  +L
Sbjct: 351 IGTERGSKMIIFVETKKKVDDITKTIKRDGWSAISIHGDKSQPERDYVLSEFRNGKTMIL 410

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLD+ +   V   D     +  S    I  IGR  R
Sbjct: 411 VATDVAARGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGR 449


>gi|57866751|ref|YP_188362.1| primosomal protein N' [Staphylococcus epidermidis RP62A]
 gi|57637409|gb|AAW54197.1| primosomal protein N' [Staphylococcus epidermidis RP62A]
          Length = 802

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +++ D   GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 594 KLLNDFEAGKGDILLGTQMIAKGLDYPNITLVGVLNADTMLNLPDFRASERTYQLLTQVS 653

Query: 676 GRAARN 681
           GRA R+
Sbjct: 654 GRAGRH 659


>gi|26987797|ref|NP_743222.1| DEAD/H associated domain protein [Pseudomonas putida KT2440]
 gi|24982493|gb|AAN66686.1|AE016296_6 ATP-dependent DNA helicase lhr, putative [Pseudomonas putida
           KT2440]
          Length = 1434

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 7/116 (6%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDL 628
           VYD +   A++    L+ V T+R+AE +T +L +R  +  V   H  +    R++  + L
Sbjct: 266 VYDRLATLAREHRTTLVFVNTRRLAERITRHLSDRLGKEAVAAHHGSLSKALRLDAEQRL 325

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + G+  VLV    L  G+DI +  LV  + +       S  + +Q +GRA   V+ 
Sbjct: 326 KSGQLQVLVATASLELGIDIGDIDLVCQVASPG-----SIAAFLQRVGRAGHQVDG 376


>gi|15803103|ref|NP_289134.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 EDL933]
 gi|12516997|gb|AAG57692.1|AE005488_3 ATP-dependent RNA helicase [Escherichia coli O157:H7 str. EDL933]
          Length = 444

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +VL
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR AR
Sbjct: 303 VATDVAARGIDIPDVSHVFNFD-----MPRSGDTYLHRIGRTAR 341


>gi|316968094|gb|EFV52429.1| vacuolar proton pump subunit D 1 [Trichinella spiralis]
          Length = 794

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           L   +A++L   L+     VRY+  +++  ER+++I  +R  +  +LV  +LL  G+D+P
Sbjct: 599 LLMTIAQELDSRLWS----VRYISRDIEPQERLKVIEQMRSIESRILVSSDLLSRGVDLP 654

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              +V  LD  K G     T  +   GRA R
Sbjct: 655 MLNMVVNLDVPKYG-----TDYLHRAGRAGR 680


>gi|306833030|ref|ZP_07466162.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
 gi|304424929|gb|EFM28063.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
          Length = 526

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD +    D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|297520171|ref|ZP_06938557.1| ATP-dependent RNA helicase SrmB [Escherichia coli OP50]
          Length = 416

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +VL
Sbjct: 215 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 274

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR AR
Sbjct: 275 VATDVAARGIDIPDVSHVFNFD-----MPRSGDTYLHRIGRTAR 313


>gi|269103367|ref|ZP_06156064.1| helicase-related protein [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163265|gb|EEZ41761.1| helicase-related protein [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 804

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 10/142 (7%)

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
           Q +  ++I    G  DP V   +  TQ+   +   +   ++  R L   ++K+ A+ +  
Sbjct: 401 QFVNYQEIPWRNGKFDPKVLDNAFATQLRAQHILKHWQEKKQTRTLAFCISKKHADYMAN 460

Query: 601 YLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           +     I+    Y +SEV+   R E ++ L  G+ D++  ++L  EG DIP    + ++ 
Sbjct: 461 FFTLAGIKAIAVYSYSEVR---RNEALKQLEHGEIDIIFSVDLFNEGTDIPAIDTILMIR 517

Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680
             +     SK   +Q +GR  R
Sbjct: 518 PTE-----SKILFLQQLGRGLR 534


>gi|218690692|ref|YP_002398904.1| ATP-dependent RNA helicase SrmB [Escherichia coli ED1a]
 gi|218428256|emb|CAR09175.2| ATP-dependent RNA helicase [Escherichia coli ED1a]
          Length = 444

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +VL
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR AR
Sbjct: 303 VATDVAARGIDIPDVSHVFNFD-----MPRSGDTYLHRIGRTAR 341


>gi|154250423|ref|YP_001411248.1| DEAD/DEAH box helicase domain-containing protein [Fervidobacterium
           nodosum Rt17-B1]
 gi|154154359|gb|ABS61591.1| DEAD/DEAH box helicase domain protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 923

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           ++  I    Q  L    TVL ++  E++ E      IRV  +   V   ER EI+RD++ 
Sbjct: 444 IFRAIVSGKQAALLAPTTVLARQHYENIAERFKPFGIRVALLDRFVTKKEREEILRDVKN 503

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           GK D+L+G + +   +   + GLV I +  K G
Sbjct: 504 GKIDLLIGTHSILNNVVFADLGLVVIDEEQKFG 536


>gi|326430178|gb|EGD75748.1| eIF-4a [Salpingoeca sp. ATCC 50818]
          Length = 409

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE L  R  +V   H ++   ER  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 284 TRRKVDWLTEQLRARGHQVSCTHGDMTQDERNMIMKEFRAGSTRVLITTDLLARGIDVQQ 343

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
             LV   D  +++E +L         IGR+ R
Sbjct: 344 VSLVINFDLPSNRENYLHR-------IGRSGR 368


>gi|321479177|gb|EFX90133.1| hypothetical protein DAPPUDRAFT_300157 [Daphnia pulex]
          Length = 404

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 263 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDTIMKEFR 317

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 318 NGQSRVLITTDVWARGIDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 363


>gi|311898243|dbj|BAJ30651.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054]
          Length = 884

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A D+ E L +R      +H ++    R + +R  R GK DVLV  ++   G+D+
Sbjct: 235 TKRTAADVAEQLTKRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDV 292


>gi|307611190|emb|CBX00835.1| hypothetical protein LPW_25391 [Legionella pneumophila 130b]
          Length = 589

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E++ E L +  +R   +H ++    R  II   + G  D+LV  ++   
Sbjct: 248 VIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVAAR 307

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAI 701
           GLD+     V   D   D E +       +  IGR  R   S V IL+       +  +I
Sbjct: 308 GLDVERVTHVINYDMPHDNETY-------VHRIGRTGRAGRSGVTILFVTPKESRLISSI 360

Query: 702 DETTRRREKQLEHNKKHNI 720
           +  TR+R ++++    H I
Sbjct: 361 ERHTRQRIEKVQVPNDHMI 379


>gi|307169387|gb|EFN62107.1| Eukaryotic initiation factor 4A-III [Camponotus floridanus]
          Length = 402

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 261 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFR 315

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 316 SGQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 361


>gi|297571784|ref|YP_003697558.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932131|gb|ADH92939.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 520

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           +V   I  A  +GL I+ T  TKR A  + E L  R      +H ++    R + +R  R
Sbjct: 277 EVLARILQARGRGLTIIFT-RTKRTAARVAEDLAARGFATGALHGDLGQGAREQALRAFR 335

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            GK DVLV  ++   G+D+     V    A ++     + + +  IGR  R  +S   +
Sbjct: 336 HGKIDVLVATDVAARGIDVDNVTHVINYQAPED-----EKTYVHRIGRTGRAGHSGTAI 389


>gi|270003649|gb|EFA00097.1| hypothetical protein TcasGA2_TC002912 [Tribolium castaneum]
          Length = 557

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A+ L   L    I V  +H++   L+R   +R  R G+  VL+   L+  
Sbjct: 340 VLVFVQSKDRAQQLFNELIYDGINVDAIHADRTQLQRDNTVRSFREGRIWVLICTELMAR 399

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D     LV   D     F  S  S +  +GRA R
Sbjct: 400 GIDFKGVNLVINYD-----FPPSAISYVHRVGRAGR 430


>gi|259502863|ref|ZP_05745765.1| ATP-dependent RNA helicase DbpA [Lactobacillus antri DSM 16041]
 gi|259169230|gb|EEW53725.1| ATP-dependent RNA helicase DbpA [Lactobacillus antri DSM 16041]
          Length = 463

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK  AE+LT YL E+ ++V  +H  ++  +R   +R +R   +  +V  +L   G+DI  
Sbjct: 260 TKERAEELTRYLTEQGLKVALIHGGLEPRKRKRTMRQIRNLDYQYVVATDLAARGIDIDG 319

Query: 651 CGLVAI--LDADKEGFLRSKTSLIQTIGRAARN--VNSKVILY 689
             LV    L  D E F       +  +GR  RN    + + LY
Sbjct: 320 VSLVINDDLPTDLEYF-------VHRVGRTGRNQLTGTAITLY 355


>gi|240850745|ref|YP_002972145.1| ATP-dependent DNA helicase RecG [Bartonella grahamii as4aup]
 gi|240267868|gb|ACS51456.1| ATP-dependent DNA helicase RecG [Bartonella grahamii as4aup]
          Length = 702

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 15/141 (10%)

Query: 567 QVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTE------YLYER-NIRVRYMHSEVK 617
           ++ ++ + I +A ++G  L  +  ++ +  A DLT       +L+ER    V  +H ++ 
Sbjct: 469 RLHELIERIAIALEKGEKLYWICPLVEESTALDLTSIENRFAFLHERFGAHVGMIHGKMS 528

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T ++   +   + G   +LV   ++  G+DIP+  ++ I  A+  G     + L Q  GR
Sbjct: 529 TEKKEAAMASFKCGNTRILVATTVIEVGVDIPDASIIIIEHAEHFGL----SQLHQLRGR 584

Query: 678 AARN--VNSKVILYADTITKS 696
             R    +S ++LY D +TK+
Sbjct: 585 VGRGNKKSSCILLYKDPLTKT 605


>gi|238061200|ref|ZP_04605909.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
           protein [Micromonospora sp. ATCC 39149]
 gi|237883011|gb|EEP71839.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
           protein [Micromonospora sp. ATCC 39149]
          Length = 557

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL ++ T  TKR A+ + E L  R   V  +H ++    R   +R  R GK D+LV
Sbjct: 292 AEGRGLTMIFT-RTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDILV 350

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
             ++   GLD+   G+  +++ D      + T  I   GRA 
Sbjct: 351 ATDVAARGLDV--SGVTHVINYDCPEDQDTYTHRIGRTGRAG 390


>gi|224060745|ref|XP_002196090.1| PREDICTED: eukaryotic translation initiation factor 4A2
           [Taeniopygia guttata]
          Length = 407

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 282 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 341

Query: 651 CGLV 654
             LV
Sbjct: 342 VSLV 345


>gi|190151182|ref|YP_001969707.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307264531|ref|ZP_07546115.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189916313|gb|ACE62565.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306870130|gb|EFN01890.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 693

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL   L   ++R+  +H  +K  E+ EI+ + +    D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLQRAL--PDLRIGLVHGRMKPQEKQEIMAEFKAANIDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I ++++ G       L Q  GR  R   +   V+LY   + K
Sbjct: 567 IENSERLGL----AQLHQLRGRVGRGATASHCVLLYKPPLGK 604


>gi|167464130|ref|ZP_02329219.1| ATP-dependent DNA helicase RecG [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322384318|ref|ZP_08058016.1| ATP-dependent DNA helicase RecG-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321150820|gb|EFX44257.1| ATP-dependent DNA helicase RecG-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 681

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++ +  +H  +   E+ + +R  + G   VLV   ++  G+D+P   L+ + DAD+ G  
Sbjct: 500 DLNIGLLHGRMTAAEKDDTMRSFKDGSIQVLVSTTVIEVGVDVPNATLMVVYDADRFGL- 558

Query: 666 RSKTSLIQTIGRAARNVN-SKVILYADT---ITKSIQLAIDETT 705
              + L Q  GR  R  + S  +L AD    + K    A+ ETT
Sbjct: 559 ---SQLHQLRGRVGRGEHQSFCVLIADPKTEVGKERMQAMTETT 599


>gi|152981099|ref|YP_001355159.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281176|gb|ABR89586.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 778

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 11/160 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L   L  R      ++ +++  +R   I+ L+ GK D+LV  ++   
Sbjct: 249 MIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVATDVAAR 308

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E +    T  I   GRA R  + + IL+     +++  AI+
Sbjct: 309 GLDVERISHVINYDVPHDPESY----THRIGRTGRAGR--SGEAILFIAPRERNLLKAIE 362

Query: 703 ETTRRREKQLEHNKKHNINPQSV---KEKIMEVIDPILLE 739
             TR+    LE      +N   +   KE+I E I    LE
Sbjct: 363 RATRQPISVLELPSVEAVNDVRISRFKEQIAETIAAGGLE 402


>gi|114590952|ref|XP_001155612.1| PREDICTED: similar to initiation factor 4AII isoform 1 [Pan
           troglodytes]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 265 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 324

Query: 651 CGLV 654
             LV
Sbjct: 325 VSLV 328


>gi|67921537|ref|ZP_00515055.1| Transcription-repair coupling factor [Crocosphaera watsonii WH
           8501]
 gi|67856649|gb|EAM51890.1| Transcription-repair coupling factor [Crocosphaera watsonii WH
           8501]
          Length = 1160

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
           KE    LV+  Y+R ++  + G +   GD ++IFP   E +  R+  FG+++E+I EF P
Sbjct: 155 KEFDGKLVRLGYERVNLVEVEGQWSRRGDIVDIFPVSSE-IPIRLEWFGDELEKIREFDP 213

Query: 366 LTGQKIRNVETI 377
            T + +  +E I
Sbjct: 214 STQRSLDKLEQI 225


>gi|325833432|ref|ZP_08165881.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
 gi|325485356|gb|EGC87825.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
          Length = 560

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   TK   ED  E L +   R   +HS+    +R   + + R G+  +LV  ++L 
Sbjct: 297 RVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVATDVLA 356

Query: 644 EGLDIPECGLVAILD 658
            G+D+P+   V   D
Sbjct: 357 RGIDVPDVDHVINFD 371


>gi|325189223|emb|CCA23746.1| DEAD box helicase putative [Albugo laibachii Nc14]
          Length = 809

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 2/99 (2%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G ++++ V  K+  + L +YL +   R   +H      +R E +R  R G  DVLV  ++
Sbjct: 647 GQKVMVFVNIKKECDVLGKYLAQEGFRTTILHGGKSQEQREESLRGFREGFCDVLVATDV 706

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              GLDIP+  +  +++ D    + +    I   GRA +
Sbjct: 707 AGRGLDIPD--VTHVVNYDLPSKIENYCHRIGRTGRAGK 743


>gi|300812041|ref|ZP_07092491.1| helicase C-terminal domain protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496967|gb|EFK32039.1| helicase C-terminal domain protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 921

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 7/120 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRM--AEDLTEYLYERNIRVRYMHSEVKTLE 620
            A+ +V  +  E++     G R    V   R   A  L E   ++    + + ++     
Sbjct: 393 GAKKRVSYLLKELDYYGYSGPRPCGLVFCSRQEEARQLAEAFTQQGQPAQALTNQDSPAV 452

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R + ++DL  G+   LV ++L  EG+DIP    + +L A +     S T  IQ +GR  R
Sbjct: 453 RRQAVKDLESGRLHYLVTVDLFNEGVDIPALNQIVMLRATQ-----SATVFIQQLGRGLR 507


>gi|296102868|ref|YP_003613014.1| transcription-repair coupling factor [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057327|gb|ADF62065.1| transcription-repair coupling factor [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 1148

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 61/304 (20%), Positives = 127/304 (41%), Gaps = 51/304 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           +TG+     +A++ E    P +++AP+   A +L+ E +  F  N V     +    YD 
Sbjct: 22  LTGAACATLVAEIAERHPGPVVLVAPDMQNALRLHDEIRQ-FTDNLVFSLADWETLPYDS 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSV 287
           + P   +      I    S   Q+  M+         +L++R     V   S ++G   V
Sbjct: 81  FSPHQEI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV 129

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
                    +K G  + + +L + L    Y+  D  +  G +   G  ++++P    D  
Sbjct: 130 ---------MKKGQRLSRDDLRAQLDSAGYRHVDQVMEHGEYATRGALLDLYPMG-SDQP 179

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
           +R+  F ++I+ +  F   T + +  VE I +     +    PT  TA++  + + + + 
Sbjct: 180 YRLDFFDDEIDSLRVFDADTQRTLEEVEAINLLPAHEF----PTDKTAIELFRSQWRDKF 235

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
            ++++     +A+ + Q++        + G+  +   Y + L      EP P LF Y P 
Sbjct: 236 -DVKR-----DAEHIYQQV--------SKGTLPAGIEYWQPLFF---NEPLPALFSYFPA 278

Query: 468 DSLL 471
           ++L+
Sbjct: 279 NTLI 282


>gi|224007100|ref|XP_002292510.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972152|gb|EED90485.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 365

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  Q+GL IL+ V TKR  + + + L ER      +H +    ER + +R  + G+  VL
Sbjct: 223 LTIQEGL-ILIFVETKRNCDFVEDILCERGFPACSIHGDKSQREREDSLRAFKTGRCPVL 281

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  ++   GLDIP    V   D        +    +  IGR  R  N+   L
Sbjct: 282 VATDVAARGLDIPNVTQVVNYDLPT-----NIDDYVHRIGRTGRAGNTGAAL 328


>gi|134085663|ref|NP_001076996.1| nucleolar RNA helicase 2 [Bos taurus]
 gi|133778115|gb|AAI23649.1| DDX21 protein [Bos taurus]
 gi|296472163|gb|DAA14278.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Bos taurus]
          Length = 784

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK+ A++L++ +  R    + +H ++   +R   ++  R G F VLV  N+  
Sbjct: 441 RTIIFCETKKEAQELSQNVAVRQ-DAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAA 499

Query: 644 EGLDIPECGLV 654
            GLDIPE  LV
Sbjct: 500 RGLDIPEVDLV 510


>gi|170720277|ref|YP_001747965.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169758280|gb|ACA71596.1| DEAD/H associated domain protein [Pseudomonas putida W619]
          Length = 1451

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 22/152 (14%)

Query: 550 RPTGLVD-------------PPVEIRSA-RTQVED-VYDEINLAAQQGLRILLTVLTKRM 594
           RP  +VD             PPV + +   T V + VYD + + A++    L+ V T+R+
Sbjct: 257 RPCAIVDIGHTRQRDLALEVPPVPLGAVMATDVWNLVYDRLAILAREHRTTLVFVNTRRL 316

Query: 595 AEDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           AE LT +L +R  +  V   H  +    R++  + L+ G+  VLV    L  G+D+ +  
Sbjct: 317 AERLTRHLSDRLGKEAVAAHHGSLAKELRLDAEQRLKNGQLQVLVATASLELGIDVGDVD 376

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           LV  + +       S  + +Q +GR+   V  
Sbjct: 377 LVCQIASPG-----SIAAFLQRVGRSGHQVEG 403


>gi|71896321|ref|NP_001026097.1| ATP-dependent RNA helicase DDX42 [Gallus gallus]
 gi|82194905|sp|Q5F485|DDX42_CHICK RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|60098437|emb|CAH65049.1| hypothetical protein RCJMB04_2e15 [Gallus gallus]
          Length = 944

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L + +  +  +H ++   ER ++I + +     +LV  ++   
Sbjct: 501 VLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAAR 560

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612


>gi|48136057|ref|XP_393356.1| PREDICTED: eukaryotic initiation factor 4A-III-like isoform 1 [Apis
           mellifera]
          Length = 403

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 262 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFR 316

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 317 SGQSRVLITTDVWARGIDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 362


>gi|83765677|dbj|BAE55820.1| unnamed protein product [Aspergillus oryzae]
          Length = 853

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 15/120 (12%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYL--YERNIR--VRYMHSEVKTLE------RIEIIRDL 628
           +Q   RI++ V  +  AE++T  L  YE  IR  V    S  K  E      +++I++  
Sbjct: 416 SQSSTRIMIFVHFRDSAEEVTRVLKRYEPMIRPHVFVGQSSAKGSEGMGQKTQLDIVQKF 475

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G ++ +V  ++  EGLDI E  L+   D+       S   ++Q +GR  R     ++L
Sbjct: 476 KKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSA-----SPIRMLQRMGRTGRKRAGNIVL 530


>gi|325184962|emb|CCA19454.1| DEAD box ATPdependent RNA helicase putative [Albugo laibachii Nc14]
          Length = 399

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LT  + E N  V  MH ++   ER  I+++ R
Sbjct: 258 DLYDTLTIT-----QAVIFCNTKRKVDWLTTKMREANFTVSSMHGDMPQRERDTIMQEFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 313 SGGSRVLITTDIWGRGLDVQQVSLVICYD-----LPNNRELYIHRIGRSGR 358


>gi|317140737|ref|XP_001818384.2| ATP-dependent RNA helicase eIF4A [Aspergillus oryzae RIB40]
          Length = 397

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 272 TRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 331

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 332 VSLVINYDLPANRENYI 348


>gi|311898036|dbj|BAJ30444.1| putative transcription-repair-coupling factor [Kitasatospora setae
           KM-6054]
          Length = 1202

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 101/247 (40%), Gaps = 47/247 (19%)

Query: 149 PSGDQPAAIAQLLKGIHSR--EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206
           P   +P AIA L + +  R  E+ + +L VT +G+                        A
Sbjct: 36  PPAARPFAIAALARSLAGRGGERGRPVLAVTATGRE-----------------------A 72

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266
             L +  ++  P +AV  F ++ +    E   PR+DT   + + +     R+ H      
Sbjct: 73  EDLAASLRSLLPADAVAEFPAW-ETLPHERLSPRSDTVGRRLAVLR----RIVHPRADDP 127

Query: 267 LERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
                 +VV+ V  +      G+  +E      V L+ G+  +  E+   L    Y R +
Sbjct: 128 AAGPVQVVVAPVRSVLQPQVKGLAELEP-----VALRTGERYDLGEVARRLAAAAYARVE 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           +   RG F V G  +++FP   E+   RV  +G+D+EEI  F      K+ +  +++I  
Sbjct: 183 LVEKRGEFAVRGGILDVFPP-TEEHPLRVEFWGDDVEEIRYF------KVADQRSLEIAE 235

Query: 382 NSHYVTP 388
           +  +  P
Sbjct: 236 HGLWAPP 242


>gi|297595326|gb|ADI48178.1| vasa [Crepidula fornicata]
          Length = 502

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+ V  KR A+ L  +L +       +H +    ER E + D + GK  VL+  N+  
Sbjct: 310 RVLVFVGQKRNADFLASFLSQSGYPTTSIHGDRLQREREEALMDFKRGKSPVLIATNVAA 369

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDIP+   V   D   +         +  IGR  R  N
Sbjct: 370 RGLDIPDVTHVVNYDLPTD-----IDEYVHRIGRTGRCGN 404


>gi|283458570|ref|YP_003363203.1| transcription-repair coupling factor [Rothia mucilaginosa DY-18]
 gi|283134618|dbj|BAI65383.1| transcription-repair coupling factor [Rothia mucilaginosa DY-18]
          Length = 1330

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 76/173 (43%), Gaps = 21/173 (12%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
           ++++AP    A  L +  +++ P   +  F ++ +    E   PR+DT       +  ++
Sbjct: 158 SLIIAPTDRQAEDLAAALRSYLPAADIALFPAW-ETLPHERLSPRSDT-------VGRRL 209

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLS 310
             +R  A     ++   +V++ V  +      GI  +E      V L  G+    K+++ 
Sbjct: 210 QVLR--AMTGDADKRPQVVIAPVRAVIQPIVTGIEKLEP-----VHLVRGEEYPFKDVVR 262

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            L    Y R D+   RG + V G  I++FP        R+  FG++++E+  F
Sbjct: 263 GLNDAAYSRVDLVAKRGEYAVRGGIIDVFPP-TATTPVRLEFFGDELDEMRHF 314


>gi|149636565|ref|XP_001513702.1| PREDICTED: similar to DEAD/H box polypeptide 4 [Ornithorhynchus
           anatinus]
          Length = 526

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L + NI    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 342 RTMVFVETKKKADFIATFLCQENISTTSIHGDREQREREQALGDFRSGKCPVLVATSVAA 401

Query: 644 EGLDI 648
            GLDI
Sbjct: 402 RGLDI 406


>gi|94499512|ref|ZP_01306049.1| transcription-repair coupling factor [Oceanobacter sp. RED65]
 gi|94428266|gb|EAT13239.1| transcription-repair coupling factor [Oceanobacter sp. RED65]
          Length = 1143

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 41/182 (22%)

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI----RVRYMHSEVK 617
           R+    +  V D   +A     R+ +    K+  E+L +    R I    +V Y+H+EVK
Sbjct: 758 RTLNMAMSGVRDLSIIATPPARRLAVKTFVKKWDENLVKEAVLREILRGGQVYYLHNEVK 817

Query: 618 TLERI-----EIIRDLRLG---------------------KFDVLVGINLLREGLDIPEC 651
           T+E+      ++I D R+G                     +F+VLV   ++  G+D+P  
Sbjct: 818 TIEKTAEDLAKLIPDARIGVAHGQMTERQLESVMSDFYHKRFNVLVCTTIVETGIDVPNA 877

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
             + +  ADK G       L Q  GR  R+ +         I K I       T+  EK+
Sbjct: 878 NTIVLERADKFGL----AQLHQLRGRVGRSHHQAYAYLMTPIEKKI-------TKDAEKR 926

Query: 712 LE 713
           L+
Sbjct: 927 LD 928



 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L +G++++  +L   LV   Y+  D     G F V G  ++IFP   E   +R+ +F ++
Sbjct: 126 LSVGETLDMDKLRQQLVSAGYQSVDGVYEHGEFCVRGAILDIFPMGSE-TPFRIELFDDE 184

Query: 357 IEEISEFYPLTGQKIRNVETIKI 379
           IE I  F P T +     + I++
Sbjct: 185 IESIRWFNPETQRSTETTDKIEL 207


>gi|90414227|ref|ZP_01222207.1| ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90324674|gb|EAS41215.1| ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 437

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 23/157 (14%)

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL------------ 590
           +  E +  P  +V  P +    R Q E  Y     + Q+ +R+L T++            
Sbjct: 208 LAFEHMNSPESVVVEPDQKTGHRIQEELFYP----SNQEKMRLLQTLIEEEWPDRAIIFA 263

Query: 591 -TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            TK   ED+  +L   N RV  ++ +V   +R+ I+     G+ D+LV  ++   GL IP
Sbjct: 264 NTKHRCEDIWGHLAADNHRVGLLNGDVPQKKRVRILEQFTQGEIDILVATDVAARGLHIP 323

Query: 650 ECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNS 684
           +   V   D   D E ++      I   GRA  + NS
Sbjct: 324 QVTHVYNYDLPDDAEDYVHR----IGRTGRAGESGNS 356


>gi|148546345|ref|YP_001266447.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148510403|gb|ABQ77263.1| DEAD/H associated domain protein [Pseudomonas putida F1]
          Length = 1426

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 22/152 (14%)

Query: 550 RPTGLVD-------------PPVEIRSA-RTQVED-VYDEINLAAQQGLRILLTVLTKRM 594
           RP  +VD             PPV + +   T V   VYD +   A++    L+ V T+R+
Sbjct: 230 RPCAIVDIGHARKRDLAIEVPPVPLGAVMATDVWGLVYDRLATLAREHRTTLVFVNTRRL 289

Query: 595 AEDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           AE +T +L +R  +  V   H  +    R++  + L+ G+  VLV    L  G+DI +  
Sbjct: 290 AERITRHLSDRLGKEAVAAHHGSLSKALRLDAEQRLKSGQLQVLVATASLELGIDIGDID 349

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           LV  + +       S    +Q +GRA   V+ 
Sbjct: 350 LVCQIASPG-----SIAGFLQRVGRAGHQVDG 376


>gi|325124880|gb|ADY84210.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 921

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 7/120 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRM--AEDLTEYLYERNIRVRYMHSEVKTLE 620
            A+ +V  +  E++     G R    V   R   A  L E   ++    + + ++     
Sbjct: 393 GAKKRVSYLLKELDYYGYSGPRPCGLVFCSRQEEARQLAEAFTQQGQPAQALTNQDSPAV 452

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R + ++DL  G+   LV ++L  EG+DIP    + +L A +     S T  IQ +GR  R
Sbjct: 453 RRQAVKDLESGRLHYLVTVDLFNEGVDIPALNQIVMLRATQ-----SATVFIQQLGRGLR 507


>gi|308183623|ref|YP_003927750.1| ATP-dependent DNA helicase RecG [Helicobacter pylori PeCan4]
 gi|308065808|gb|ADO07700.1| ATP-dependent DNA helicase RecG [Helicobacter pylori PeCan4]
          Length = 623

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFT-MAKVIE 190
           N+S+ +  F     +  + DQ  AI ++   + S    + L++G  G GKT   +A ++ 
Sbjct: 216 NNSERLKAFIASLPFKLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVL 275

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           A     ++MAP  ILA QLY+E   F P
Sbjct: 276 AYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|291166899|gb|EFE28945.1| ATP-dependent DNA helicase RecG [Filifactor alocis ATCC 35896]
          Length = 684

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 589 VLTKRMAEDLTEYLYE---RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           VL  + AE+L E L      + RV  +H ++K+ E+ E++R  +  + DVLV   ++  G
Sbjct: 481 VLDLKSAEELYESLKTGVFSSFRVGLLHGKMKSSEKTEMMRQYQEHEIDVLVSTTVIEVG 540

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           +++P   ++ I DA + G     + L Q  GR  R 
Sbjct: 541 INVPNATVMIIEDAQRFGL----SQLHQLRGRVGRG 572


>gi|268686819|ref|ZP_06153681.1| transcription-repair coupling factor [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627103|gb|EEZ59503.1| transcription-repair coupling factor [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 1241

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 17/199 (8%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ +    ++  A   
Sbjct: 53  ALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ----IKSGAA-- 105

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
                D + V   + +  +  V   +     LK G +++   L + LV   Y      + 
Sbjct: 106 -----DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVA 160

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
            G F V G  +++FP   E   +R+ +F ++I+ I  F   T + I  V  I++     +
Sbjct: 161 AGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDSIKTFDTDTQRTISPVSEIRLLPAHEF 219

Query: 386 VTPRPTLNTAMKYIKEELK 404
               PT + A K  +   +
Sbjct: 220 ----PTDSEAQKIFRSRFR 234



 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 930  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 986

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 987  -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1022


>gi|226479202|emb|CAX73096.1| ATP-dependent RNA helicase DDX3Y [Schistosoma japonicum]
          Length = 270

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 4/111 (3%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++ G   L+ V TKR A+ L  YLY +  +V  +H +    +R   +   R G+  VLV 
Sbjct: 61  SEAGTLTLVFVETKRGADALENYLYSQKFQVASIHGDRTQEDRELALSCFRSGRTPVLVA 120

Query: 639 INLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
             +   GLDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 121 TAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDK 171


>gi|238918011|ref|YP_002931525.1| ATP-dependent DNA helicase RecG [Edwardsiella ictaluri 93-146]
 gi|238867579|gb|ACR67290.1| ATP-dependent DNA helicase RecG, putative [Edwardsiella ictaluri
           93-146]
          Length = 693

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE L + L E  +R+  +H  +K  ++  ++   + G+ D+LV   ++  G+D+P   L+
Sbjct: 508 AETLIQQLPE--LRIALVHGRMKATDKQRVMAQFKAGEVDLLVATTVIEVGVDVPNASLM 565

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
            I + ++ G       L Q  GR  R   +   V+LY   ++++ Q
Sbjct: 566 IIENPERLGL----AQLHQLRGRVGRGAIASHCVLLYKSPLSQTAQ 607


>gi|226224414|ref|YP_002758521.1| ATP-dependent DNA helicase recG [Listeria monocytogenes Clip81459]
 gi|225876876|emb|CAS05585.1| Putative ATP-dependent DNA helicase recG [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 682

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 507 MHGKLLPADKEQIMRDFNNKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 562

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  + S  IL AD  T+
Sbjct: 563 HQLRGRVGRGADQSYCILIADPKTE 587


>gi|224124522|ref|XP_002330044.1| predicted protein [Populus trichocarpa]
 gi|222871469|gb|EEF08600.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           S RT + D+   + + A+ G  I+ T  TKR A++++  L    I    +H ++   +R 
Sbjct: 367 SKRTILSDL---VTVYAKGGKTIIFT-QTKRDADEVSMALTN-TIASEALHGDISQHQRE 421

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
             +   R GKF VLV  ++   GLDIP   L+
Sbjct: 422 RTLNGFRQGKFTVLVATDVASRGLDIPNVDLI 453


>gi|212546709|ref|XP_002153508.1| eukaryotic translation initiation factor 4, putative [Penicillium
           marneffei ATCC 18224]
 gi|210065028|gb|EEA19123.1| eukaryotic translation initiation factor 4, putative [Penicillium
           marneffei ATCC 18224]
          Length = 397

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 272 TRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 331

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 332 VSLVINYDLPANRENYI 348


>gi|170767442|ref|ZP_02901895.1| ATP-dependent RNA helicase SrmB [Escherichia albertii TW07627]
 gi|170123776|gb|EDS92707.1| ATP-dependent RNA helicase SrmB [Escherichia albertii TW07627]
          Length = 444

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +VL
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR AR
Sbjct: 303 VATDVAARGIDIPDVSHVFNFD-----MPRSGDTYLHRIGRTAR 341


>gi|169617257|ref|XP_001802043.1| hypothetical protein SNOG_11806 [Phaeosphaeria nodorum SN15]
 gi|160703370|gb|EAT80850.2| hypothetical protein SNOG_11806 [Phaeosphaeria nodorum SN15]
          Length = 1091

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 598  LTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            L EY+    + RV  +HS +K  +RI  +   R     +LV  ++   GLDIPE GLV  
Sbjct: 929  LLEYMLRMLDHRVTALHSGLKQQDRISNLARFRAQAARILVATDVAARGLDIPEVGLVVN 988

Query: 657  LDADKEGFLRSKTSLIQTIGRAAR 680
             D       R     I  +GR AR
Sbjct: 989  FDVP-----RDPDDYIHRVGRTAR 1007


>gi|119581203|gb|EAW60799.1| likely ortholog of mouse D11lgp2, isoform CRA_c [Homo sapiens]
          Length = 379

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+I+  + G  ++LV  ++  EGLDIP C +V      + G L ++ S++Q  GRA
Sbjct: 277 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 327


>gi|45383077|ref|NP_989880.1| eukaryotic initiation factor 4A-II [Gallus gallus]
 gi|82213243|sp|Q8JFP1|IF4A2_CHICK RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|21435808|gb|AAM53975.1|AF515726_1 translational eukaryotic inititation factor 4AII [Gallus gallus]
 gi|53132817|emb|CAG31939.1| hypothetical protein RCJMB04_14a6 [Gallus gallus]
          Length = 407

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 282 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 341

Query: 651 CGLV 654
             LV
Sbjct: 342 VSLV 345


>gi|52842555|ref|YP_096354.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629666|gb|AAU28407.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 589

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E++ E L +  +R   +H ++    R  II   + G  D+LV  ++   
Sbjct: 248 VIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVAAR 307

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAI 701
           GLD+     V   D   D E +       +  IGR  R   S V IL+       +  +I
Sbjct: 308 GLDVERVTHVINYDMPHDNETY-------VHRIGRTGRAGRSGVTILFVTPKESRLISSI 360

Query: 702 DETTRRREKQLEHNKKHNI 720
           +  TR+R ++++    H I
Sbjct: 361 ERHTRQRIEKVQVPNDHMI 379


>gi|16130501|ref|NP_417071.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89109382|ref|AP_003162.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|170082185|ref|YP_001731505.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238901741|ref|YP_002927537.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|134878|sp|P21507|SRMB_ECOLI RecName: Full=ATP-dependent RNA helicase srmB
 gi|42996|emb|CAA32364.1| SrmB protein [Escherichia coli]
 gi|285777|dbj|BAA02447.1| putative ATP dependent RNA helicase [Escherichia coli]
 gi|987650|dbj|BAA10922.1| putative ATP dependent RNA helicase [Escherichia coli K-12]
 gi|1788930|gb|AAC75629.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675467|dbj|BAE76752.1| ATP-dependent RNA helicase [Escherichia coli str. K12 substr.
           W3110]
 gi|169890020|gb|ACB03727.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238860047|gb|ACR62045.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|260448344|gb|ACX38766.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|315137200|dbj|BAJ44359.1| ATP-dependent RNA helicase SrmB [Escherichia coli DH1]
          Length = 444

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +VL
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR AR
Sbjct: 303 VATDVAARGIDIPDVSHVFNFD-----MPRSGDTYLHRIGRTAR 341


>gi|82545029|ref|YP_408976.1| ATP-dependent RNA helicase SrmB [Shigella boydii Sb227]
 gi|187731766|ref|YP_001881357.1| ATP-dependent RNA helicase SrmB [Shigella boydii CDC 3083-94]
 gi|81246440|gb|ABB67148.1| ATP-dependent RNA helicase [Shigella boydii Sb227]
 gi|187428758|gb|ACD08032.1| ATP-dependent RNA helicase SrmB [Shigella boydii CDC 3083-94]
 gi|320175854|gb|EFW50935.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae CDC 74-1112]
 gi|320186377|gb|EFW61111.1| ATP-dependent RNA helicase SrmB [Shigella flexneri CDC 796-83]
 gi|332092586|gb|EGI97658.1| ATP-dependent RNA helicase srmB [Shigella boydii 3594-74]
          Length = 444

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +VL
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR AR
Sbjct: 303 VATDVAARGIDIPDVSHVFNFD-----MPRSGDTYLHRIGRTAR 341


>gi|320105780|ref|YP_004181370.1| transcription-repair coupling factor [Terriglobus saanensis SP1PR4]
 gi|319924301|gb|ADV81376.1| transcription-repair coupling factor [Terriglobus saanensis SP1PR4]
          Length = 1210

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 91/210 (43%), Gaps = 16/210 (7%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           L G   R +V    G+T + +   +  +++A   PA+++  +   A  L         H 
Sbjct: 26  LSGGSGRRRVS---GLTFTARALYLPYMVKAGNAPALILVSDNKAAEAL---------HQ 73

Query: 221 AVEYFVSYYDYYQPEAYV--PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
           A+            E  +  P  D    +  S + +I   R S    +      +V++ +
Sbjct: 74  ALLGTCELTGVLACEEVLRLPAHDVLPFENLSPHAEIQEARASTLWKIATGQAKVVIAPL 133

Query: 279 -SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            S    + S + Y+ + ++LK G+  + + +L+ L+K  Y R D+  + G   + G  ++
Sbjct: 134 ESACMRLFSKDFYAGLALELKRGEEYDTEMILAHLLKVGYTRVDVVEMPGQVTLRGGIVD 193

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           ++   + D   R+  FG++IE + +F P T
Sbjct: 194 VYSPEM-DRPVRIDFFGDEIESMRKFDPDT 222


>gi|209762794|gb|ACI79709.1| ATP-dependent RNA helicase [Escherichia coli]
          Length = 444

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +VL
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR AR
Sbjct: 303 VATDVAARGIDIPDVSHVFNFD-----MPRSGDTYLHRIGRTAR 341


>gi|220933289|ref|YP_002512188.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219994599|gb|ACL71201.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 602

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 7/152 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK    +L E L  R      ++ ++   +R  ++  L+ G+ D+LV  +++  
Sbjct: 251 MLIFVRTKTETVELAERLTARGHACEALNGDIPQNQRERVVERLKKGQLDILVATDVVAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+    +  +L+ D      S    I   GRA R    + IL+     + +  AI+  
Sbjct: 311 GLDVER--ISHVLNYDIPHDTESYVHRIGRTGRAGR--TGEAILFVAPREQRMLKAIERA 366

Query: 705 TRRREKQLEHNKKHNINPQSV---KEKIMEVI 733
           TR+  + +      ++N Q +   KE+I E +
Sbjct: 367 TRQPIEPMHMPTAGDVNAQRIARFKERINEAL 398


>gi|195145936|ref|XP_002013946.1| GL23119 [Drosophila persimilis]
 gi|194102889|gb|EDW24932.1| GL23119 [Drosophila persimilis]
          Length = 1395

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ++I+I+ D R G  +VLV  ++  EG+D+ E  ++   D        + T  +Q IGR  
Sbjct: 484 QQIQIMADFRSGTSNVLVATSIGEEGIDVGEVEMIVCFDICSS----NPTRFVQRIGRTG 539

Query: 680 RNVNSKVIL 688
           R  N +V++
Sbjct: 540 RKKNGEVVM 548


>gi|154150192|ref|YP_001403810.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Methanoregula boonei 6A8]
 gi|153998744|gb|ABS55167.1| DEAD/DEAH box helicase domain protein [Methanoregula boonei 6A8]
          Length = 532

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR AEDL   +  R  R   +H ++K  +R  ++   R G  D+L+  ++   G+D+ +
Sbjct: 253 TKRGAEDLAGRIRARGYRAEELHGDMKQSQRDRVMGGFRKGTIDILIATDVAARGIDVED 312

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
             +V   D  ++         I  IGR  R   S
Sbjct: 313 VDMVINYDVPQD-----VDYYIHRIGRTGRAGKS 341


>gi|154298930|ref|XP_001549886.1| hypothetical protein BC1G_11712 [Botryotinia fuckeliana B05.10]
 gi|160380630|sp|A6SFV4|DBP8_BOTFB RecName: Full=ATP-dependent RNA helicase dbp8
 gi|150857617|gb|EDN32809.1| hypothetical protein BC1G_11712 [Botryotinia fuckeliana B05.10]
          Length = 545

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A+ LT  L   + RV  +HS++   +RI+ +   R     +LV  ++   GLDIPE GLV
Sbjct: 384 ADYLTHLLRLLDHRVTALHSKLPQRQRIDNLGRFRASAARILVATDVAARGLDIPEVGLV 443

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR 680
              D       R     I  +GR AR
Sbjct: 444 INYD-----IPRDPDDYIHRVGRTAR 464


>gi|332141064|ref|YP_004426802.1| transcription-repair coupling factor [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327551086|gb|AEA97804.1| transcription-repair coupling factor [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 1165

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 82/441 (18%), Positives = 165/441 (37%), Gaps = 59/441 (13%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           GS     +++ +   + P +++  +   A +L  E         + +F+S   +  P   
Sbjct: 30  GSSAALCISQALSQYKGPIVLITADTPSAMKLEKE---------IAFFLSDNKHNTPITL 80

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIVQ 296
            P  +T      S ++ I   R        ++ D I +  V+ +   +   +  ++ ++ 
Sbjct: 81  FPDWETLPYDSFSPHQDIVSQRLETLFRFTQQGDGIFIVPVNTLMQRLAPTDYLAKYLLM 140

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L  GD++++ +   +L +  Y      +    F V G  I++FP    D  +R+ +F ++
Sbjct: 141 LNKGDTLDRDQFRRNLEQAGYLHVSQVMSHSEFSVRGSIIDLFPMG-SDQPFRIDLFDDE 199

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           I+ I  F   T +   +V  I++     +    PT   A+   +++       LEK    
Sbjct: 200 IDSIRYFDTETQRSGESVNKIRLLPAREF----PTDKEAITLFRQQF------LEK---- 245

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
            +A    + +   +    + G+  S   Y   L  +N      TLF+Y+   SLL +   
Sbjct: 246 FDANNASESVFSQV----SKGTMPSGVEYYLPLFFKNTA----TLFDYLHPKSLLLL--- 294

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR---PLR-----FEEWNCLRPTTIVV 528
           H  +   S  +  D   +     Y    P    +    P+       ++W     T  V+
Sbjct: 295 HGDVQDASEFFWADVQERYEQYRYNLARPLLAPDELFLPINELFGAIKQWPRASLTNAVL 354

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQQGLRILL 587
              PG+  L QC+ +               + I S  +   E +   +N A   G ++L 
Sbjct: 355 EEKPGTTNL-QCEKL-------------DDIAINSQKKVPAERLIKTVNHATDNGAKVLF 400

Query: 588 TVLTKRMAEDLTEYLYERNIR 608
              T+   E L   L +  I+
Sbjct: 401 CAETQGRREGLLSVLAKAGIK 421


>gi|85712866|ref|ZP_01043908.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
 gi|85693330|gb|EAQ31286.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
          Length = 587

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 8/108 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V T++   D+ E L  +  R   +  ++   +R + +  LR G   VLV  +++ 
Sbjct: 249 RALVFVRTRQDTMDVAELLQRQGFRAAPLSGDLNQAQREQTVTQLRSGHIKVLVATDVVA 308

Query: 644 EGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GLD+PE   V   D  +D E ++      I   GRA R  + + IL+
Sbjct: 309 RGLDVPEITHVINYDLPSDTESYVHR----IGRTGRAGR--SGEAILF 350


>gi|157155812|ref|YP_001463900.1| ATP-dependent RNA helicase SrmB [Escherichia coli E24377A]
 gi|191167986|ref|ZP_03029788.1| ATP-dependent RNA helicase SrmB [Escherichia coli B7A]
 gi|300817647|ref|ZP_07097862.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300927047|ref|ZP_07142799.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|301330322|ref|ZP_07222969.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|307313853|ref|ZP_07593469.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|309794370|ref|ZP_07688793.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|157077842|gb|ABV17550.1| ATP-dependent RNA helicase SrmB [Escherichia coli E24377A]
 gi|190901993|gb|EDV61740.1| ATP-dependent RNA helicase SrmB [Escherichia coli B7A]
 gi|300416931|gb|EFK00242.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|300529635|gb|EFK50697.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300843656|gb|EFK71416.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|306906354|gb|EFN36869.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|308121826|gb|EFO59088.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|315061895|gb|ADT76222.1| ATP-dependent RNA helicase [Escherichia coli W]
 gi|323377524|gb|ADX49792.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
          Length = 444

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +VL
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR AR
Sbjct: 303 VATDVAARGIDIPDVSHVFNFD-----MPRSGDTYLHRIGRTAR 341


>gi|116617652|ref|YP_818023.1| ATP-dependent DNA helicase RecG [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096499|gb|ABJ61650.1| ATP-dependent DNA helicase RecG [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 676

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N  +  +H  +   E+  ++ D +  K  VLV   ++  G+D+P   ++ I+DAD+ G  
Sbjct: 496 NDTIGLLHGRLSNDEKKALMADFKRNKIQVLVATTVIEVGVDVPNASIMLIMDADRFGL- 554

Query: 666 RSKTSLIQTIGRAARNV-NSKVILYAD 691
                L Q  GR  R    S  IL AD
Sbjct: 555 ---AQLHQLRGRVGRGTRQSYTILVAD 578


>gi|332215079|ref|XP_003256667.1| PREDICTED: eukaryotic initiation factor 4A-II [Nomascus leucogenys]
          Length = 407

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 282 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 341

Query: 651 CGLV 654
             LV
Sbjct: 342 VSLV 345


>gi|330997407|ref|ZP_08321258.1| primosomal protein [Paraprevotella xylaniphila YIT 11841]
 gi|329570781|gb|EGG52497.1| primosomal protein [Paraprevotella xylaniphila YIT 11841]
          Length = 825

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 8/73 (10%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           I+ D + GK DVLVG  ++ +GLD     +V IL+AD          F R+   + Q  G
Sbjct: 620 ILEDFQSGKTDVLVGTQMVTKGLDFERVSVVGILNADTMFNIPDFRSFERAFQLMAQVAG 679

Query: 677 RAA-RNVNSKVIL 688
           RA  R+   +VIL
Sbjct: 680 RAGRRSRQGRVIL 692


>gi|326934003|ref|XP_003213086.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Meleagris
           gallopavo]
          Length = 944

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L + +  +  +H ++   ER ++I + +     +LV  ++   
Sbjct: 501 VLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAAR 560

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612


>gi|322699135|gb|EFY90899.1| ATP-dependent DNA helicase mph1 [Metarhizium acridum CQMa 102]
          Length = 1070

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  ++I+ I   R G+F+VLV  ++  EGLDI +  L+   D+       S   ++Q +
Sbjct: 562 MKQAQQIQTIEKFRKGEFNVLVATSIGEEGLDIGQVDLIVCYDSSA-----SPIRMLQRM 616

Query: 676 GRAARNVNSKVIL 688
           GR  R     ++L
Sbjct: 617 GRTGRKRAGNIVL 629


>gi|317028056|ref|XP_001400485.2| DEAD/DEAH box RNA helicase [Aspergillus niger CBS 513.88]
          Length = 585

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 5/106 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A    R L+ V +K  A+ L +YLY   +    +HS+    ER + +R  R  K  +L
Sbjct: 389 LLAMPPSRTLIFVNSKTQADFLDDYLYNMGLPSTSIHSDRTQREREDALRAFRTAKCPIL 448

Query: 637 VGINLLREGLDIPECGLVAILDADK--EGFLRSKTSLIQTIGRAAR 680
           V   +   GLDI     V   D  +   G +   T  +  IGR AR
Sbjct: 449 VATGVSARGLDIKNVMHVVNFDLPRVQHGGI---TEYVHRIGRTAR 491


>gi|307329828|ref|ZP_07608983.1| ATP-dependent DNA helicase RecG [Streptomyces violaceusniger Tu
           4113]
 gi|306884557|gb|EFN15588.1| ATP-dependent DNA helicase RecG [Streptomyces violaceusniger Tu
           4113]
          Length = 736

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +AE LT+      +RV  +H  ++   + +++R    G+ DVLV   ++  G+++P    
Sbjct: 541 VAEQLTKGPLS-GLRVEVLHGRMQPEAKDDVMRRFAAGEVDVLVATTVIEVGVNVPNATA 599

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + I+DAD+ G     + L Q  GR  R   + + L
Sbjct: 600 MVIMDADRFGV----SQLHQLRGRVGRGSAAGLCL 630


>gi|281350720|gb|EFB26304.1| hypothetical protein PANDA_002799 [Ailuropoda melanoleuca]
          Length = 399

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 274 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 333

Query: 651 CGLV 654
             LV
Sbjct: 334 VSLV 337


>gi|260440312|ref|ZP_05794128.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae DGI2]
 gi|291043604|ref|ZP_06569320.1| transcription-repair coupling factor [Neisseria gonorrhoeae DGI2]
 gi|291012067|gb|EFE04056.1| transcription-repair coupling factor [Neisseria gonorrhoeae DGI2]
          Length = 1234

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 17/199 (8%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ +    ++  A   
Sbjct: 46  ALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ----IKSGAA-- 98

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
                D + V   + +  +  V   +     LK G +++   L + LV   Y      + 
Sbjct: 99  -----DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVA 153

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
            G F V G  +++FP   E   +R+ +F ++I+ I  F   T + I  V  I++     +
Sbjct: 154 AGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDSIKTFDTDTQRTISPVSEIRLLPAHEF 212

Query: 386 VTPRPTLNTAMKYIKEELK 404
               PT + A K  +   +
Sbjct: 213 ----PTDSEAQKIFRSRFR 227



 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 923  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 979

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 980  -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1015


>gi|255657458|ref|ZP_05402867.1| transcription-repair coupling factor [Clostridium difficile
           QCD-23m63]
 gi|296449053|ref|ZP_06890843.1| transcription-repair coupling factor [Clostridium difficile NAP08]
 gi|296879876|ref|ZP_06903849.1| transcription-repair coupling factor [Clostridium difficile NAP07]
 gi|296262146|gb|EFH08951.1| transcription-repair coupling factor [Clostridium difficile NAP08]
 gi|296429165|gb|EFH15039.1| transcription-repair coupling factor [Clostridium difficile NAP07]
          Length = 1128

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 79/178 (44%), Gaps = 21/178 (11%)

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           K+GD+++ + L   LV   Y+R       G F + G  I++F     +   R+ +F ++I
Sbjct: 143 KVGDNLDLERLTEKLVSLGYERVSKIEGFGQFSIRGGIIDVFSLEYTN-PIRMELFDDEI 201

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           + I  F   + + I  ++   I  +  ++ P  T +  +K  KE  K        EG   
Sbjct: 202 DSIRTFDVYSQKSIDKLQQFSITPSREFIYPEKTTDALVKLKKETTKNT-----DEGTF- 255

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                 Q I Y    + +    + +ENY  Y+      E   ++F Y+ +D+++F+++
Sbjct: 256 ------QNIDY----ISSKTYFEGVENYIDYIY----PEENKSIFTYLADDAIVFIND 299


>gi|170064010|ref|XP_001867348.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167881455|gb|EDS44838.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 1122

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           V   E+I  +RD R G  + LV   +  EG+D+ E  L+   D      +++ T  +Q I
Sbjct: 15  VSQKEQIATMRDFRSGLCNTLVATCVAEEGIDVGEVDLIVCFD-----IVKNPTRFVQRI 69

Query: 676 GRAARNVNSKVIL 688
           GR  R    +V++
Sbjct: 70  GRTGRQAVGRVLM 82


>gi|254852719|ref|ZP_05242067.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL R2-503]
 gi|300763876|ref|ZP_07073873.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL N1-017]
 gi|258606040|gb|EEW18648.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL R2-503]
 gi|300515612|gb|EFK42662.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL N1-017]
          Length = 682

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 507 MHGKLLPADKEQIMRDFNNKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 562

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  + S  IL AD  T+
Sbjct: 563 HQLRGRVGRGADQSYCILIADPKTE 587


>gi|91224087|ref|ZP_01259350.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01]
 gi|91190998|gb|EAS77264.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01]
          Length = 517

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 16/115 (13%)

Query: 553 GLVDPPVEIR------SARTQVEDVYD-EINLAAQQGLR---------ILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y  ++   A   ++         +L+   TK  A 
Sbjct: 198 GLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQVLVFTKTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
            L ++L E+N+    +H       R + + D + G+  VLV  ++   G+DIP+ 
Sbjct: 258 RLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAARGIDIPQL 312


>gi|46908043|ref|YP_014432.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|254826147|ref|ZP_05231148.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J1-194]
 gi|254933283|ref|ZP_05266642.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes HPB2262]
 gi|46881313|gb|AAT04609.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|293584843|gb|EFF96875.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes HPB2262]
 gi|293595387|gb|EFG03148.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J1-194]
 gi|328473539|gb|EGF44376.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes 220]
 gi|332312252|gb|EGJ25347.1| ATP-dependent DNA helicase recG [Listeria monocytogenes str. Scott
           A]
          Length = 682

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 507 MHGKLLPADKEQIMRDFNNKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 562

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  + S  IL AD  T+
Sbjct: 563 HQLRGRVGRGADQSYCILIADPKTE 587


>gi|71024093|ref|XP_762276.1| hypothetical protein UM06129.1 [Ustilago maydis 521]
 gi|74699014|sp|Q4P184|FAL1_USTMA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|46101778|gb|EAK87011.1| hypothetical protein UM06129.1 [Ustilago maydis 521]
          Length = 397

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + L+  + E N +V  MH E++  ER E++ + R
Sbjct: 256 DLYDTLTIT-----QAVIFCNTRRKVDWLSAKMKENNFQVSSMHGEMQQKERDEVMAEFR 310

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+DI    LV   D        ++ + I  IGR+ R
Sbjct: 311 QGSSRVLITTDVWARGIDIANISLVINYDLPT-----NRENYIHRIGRSGR 356


>gi|320588377|gb|EFX00846.1| eukaryotic translation initiation factor [Grosmannia clavigera
           kw1407]
          Length = 396

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH ++   +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 271 TRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQ 330

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 331 VSLVINYDLPANRENYI 347


>gi|331664144|ref|ZP_08365054.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA143]
 gi|331059943|gb|EGI31920.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA143]
          Length = 444

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +VL
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR AR
Sbjct: 303 VATDVAARGIDIPDVSHVFNFD-----MPRSGDTYLHRIGRTAR 341


>gi|298706995|emb|CBJ29803.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 402

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LT  + E N  V  MH ++   ER  I+ + R
Sbjct: 261 DLYDTLTVT-----QAVIFCNTKRKVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFR 315

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 316 SGRSRVLIATDVWGRGLDVQQVSLVICYD-----LPNNRELYIHRIGRSGR 361


>gi|294947712|ref|XP_002785456.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
 gi|239899367|gb|EER17252.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
          Length = 695

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 7/133 (5%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +++ D+Y  +    ++GL  L+ V TKR A+++   L         +H +    ER E +
Sbjct: 450 SKLRDLYRVLEEQTEEGL-TLVFVETKRKADEIENMLRRDRYPATSIHGDRSQWEREEAL 508

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-S 684
           +  + G+  +LV  ++   GLDI    LV   D        +    +  IGR  R  N  
Sbjct: 509 KAFKSGELPILVATDVAARGLDISHVNLVINYD-----LPNNIDDYVHRIGRTGRAGNLG 563

Query: 685 KVILYADTITKSI 697
             I + +  +K I
Sbjct: 564 TAIAFVNEGSKPI 576


>gi|289208228|ref|YP_003460294.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
 gi|288943859|gb|ADC71558.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
          Length = 627

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 4/99 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK    ++ E L  + ++   ++ +++  ER  ++ DLR G+ DV+V  ++   G+D+P 
Sbjct: 254 TKAATAEIAEALNAQGVQSSPLNGDMEQGERERVVADLRDGRLDVIVATDVAARGIDVPR 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
             +  + + D  G        I   GRA R    + IL+
Sbjct: 314 --ITHVFNYDAPGDAEVYVHRIGRTGRAGR--KGRAILF 348


>gi|143636073|gb|ABO93350.1| vasa-like protein [Hydractinia echinata]
          Length = 680

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  + G + L+ V TKR A+ L  YL +       +H +    +R E +R+ R G+  VL
Sbjct: 470 LGQEGGNKNLVFVQTKRQADFLASYLCQNGFPTTSIHGDRFQQQREEALREFRAGQQTVL 529

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +   +   GLDI +   V   D   E         I  IGR  R
Sbjct: 530 IATAVAARGLDIADVKQVINYDLPDE-----IEEYIHRIGRTGR 568


>gi|188997024|ref|YP_001931275.1| ATP-dependent DNA helicase RecG [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932091|gb|ACD66721.1| ATP-dependent DNA helicase RecG [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 799

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKTFT 184
           H S+ I+     +T FQ    +  +  Q   I ++L  I     + +++ G  GSGKT  
Sbjct: 336 HPSYKISVDPNFLTNFQKNLPFELTQVQIRTIKEILADIQKEIPMNRMVQGDVGSGKTVV 395

Query: 185 MAKVIEAMQ---RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
            A    A+      A VMAP +ILA Q Y  FKNF  +   +Y ++
Sbjct: 396 AATASLAVALNGYQAAVMAPTEILAWQHYHNFKNFLKNYLKDYEIA 441


>gi|198242225|ref|YP_002215922.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197936741|gb|ACH74074.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326623670|gb|EGE30015.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 1148

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 125/303 (41%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E   +
Sbjct: 130 --------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQ-PY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +   + +    PT   A++  + + +    
Sbjct: 181 RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPANEF----PTDKAAIELFRSQWR-DTF 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E++++     A+ + Q+++         G+  +   Y + L      EP P LF Y P +
Sbjct: 236 EVKRD-----AEHIYQQVS--------KGTLPAGIEYWQPLFF---SEPLPPLFSYFPAN 279

Query: 469 SLL 471
           +L+
Sbjct: 280 TLV 282



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|148264526|ref|YP_001231232.1| type III restriction enzyme, res subunit [Geobacter uraniireducens
           Rf4]
 gi|146398026|gb|ABQ26659.1| type III restriction enzyme, res subunit [Geobacter uraniireducens
           Rf4]
          Length = 706

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 16/104 (15%)

Query: 593 RMAEDLTEYLYERN-IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           R  + ++  L ER+ +RVR       T ER EI+RDL  G  D +V I  L EG+D+P+ 
Sbjct: 551 RQIQAVSRLLGERHGLRVRNFTFRESTEEREEILRDLTSGFLDGVVAIRCLDEGIDLPDL 610

Query: 652 GLVAILDADKEGFLRSKTS----LIQTIGRAARNVNSK--VILY 689
                    + GFL + ++     +Q  GR  RN   K   I+Y
Sbjct: 611 ---------RMGFLLASSTNPRQFVQRRGRLLRNSPGKNRAIIY 645


>gi|119500998|ref|XP_001267256.1| ATP dependent RNA helicase (Dbp1), putative [Neosartorya fischeri
           NRRL 181]
 gi|134034091|sp|A1CXK7|DED1_NEOFI RecName: Full=ATP-dependent RNA helicase ded1
 gi|119415421|gb|EAW25359.1| ATP dependent RNA helicase (Dbp1), putative [Neosartorya fischeri
           NRRL 181]
          Length = 676

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L  +      +H +    ER   +   R G+  +LV   +   G
Sbjct: 456 LIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARG 515

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 516 LDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 551


>gi|77917983|ref|YP_355798.1| putative ATP-dependent RNA helicase [Pelobacter carbinolicus DSM
           2380]
 gi|77544066|gb|ABA87628.1| putative ATP-dependent RNA helicase [Pelobacter carbinolicus DSM
           2380]
          Length = 435

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR A+ L   L  +  R   +H ++    R   +RDLR G+  VLV  ++   GLD+  
Sbjct: 253 TKRDADSLARDLSAQGYRAAALHGDMNQGARNRTVRDLRRGRIRVLVATDVAARGLDV-- 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            G+  + + D   F       I   GRA 
Sbjct: 311 AGISHVFNYDLPKFAEDYVHRIGRTGRAG 339


>gi|116493012|ref|YP_804747.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC
           25745]
 gi|116103162|gb|ABJ68305.1| Superfamily II DNA and RNA helicase [Pediococcus pentosaceus ATCC
           25745]
          Length = 453

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK  A++LT+YL  + + V  +H  ++  ER  I++D+   ++  +V  +L   G+DI  
Sbjct: 252 TKERADELTDYLKAQGLDVAKIHGGIQPRERKRIMKDIHRLRYQYVVATDLAARGIDIDG 311

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAARN 681
             LV   D   D E F       I  +GR  RN
Sbjct: 312 VSLVINDDIPTDLEFF-------IHRVGRTGRN 337


>gi|329766978|ref|ZP_08258506.1| hypothetical protein HMPREF0428_00203 [Gemella haemolysans M341]
 gi|328837703|gb|EGF87328.1| hypothetical protein HMPREF0428_00203 [Gemella haemolysans M341]
          Length = 787

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 8/93 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS-------LIQTI 675
           +++ D +  K D+L+G  ++ +GLD P   LV +L  D    + S  +       L+QT 
Sbjct: 579 KLLTDFKKHKSDILLGTQMISKGLDFPNITLVGVLSIDSMIAIPSFKANEKLFQLLVQTA 638

Query: 676 GRAARNVNSKVILYADTITKSI-QLAIDETTRR 707
           GRA R+     +++   I  +I   AID +  R
Sbjct: 639 GRAGRSEKEGEVVFQTNIASNILDYAIDHSYER 671



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQR---PAIVMAPNKILAAQLYSEFKNFFPHN 220
           LL GVTGSGKT    K++E   R    AIV+ P  IL  Q+  +FK  F  N
Sbjct: 279 LLHGVTGSGKTEIYIKLVEESLRNGKDAIVLVPEIILTPQIEKKFKKIFNEN 330


>gi|323355798|gb|EGA87612.1| Fal1p [Saccharomyces cerevisiae VL3]
          Length = 372

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + L++ L + N  V  MH ++K  ER +++ D R
Sbjct: 231 DIYDSLTIT-----QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFR 285

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  ++   G+D+ +  LV
Sbjct: 286 TGHSRVLISTDVWARGIDVQQVSLV 310


>gi|323173106|gb|EFZ58737.1| ATP-dependent RNA helicase srmB [Escherichia coli LT-68]
          Length = 442

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +VL
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR AR
Sbjct: 303 VATDVAARGIDIPDVSHVFNFD-----MPRSGDTYLHRIGRTAR 341


>gi|299136367|ref|ZP_07029551.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX8]
 gi|298602491|gb|EFI58645.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX8]
          Length = 1301

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 16/210 (7%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           L G   R +V    G+T + +   +   + A Q PA+V+  +   A  L         H 
Sbjct: 26  LAGGTGRRRVS---GLTATARALYLPYFVRASQAPALVIVSDNKAAEAL---------HA 73

Query: 221 AVEYFVSYYDYYQPEAY--VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
           AV            E    +P  D    +  S + +I   R +A   L      +V++ V
Sbjct: 74  AVLAACELTGVLAVEEVLRLPAHDVLPFENLSPHPEIQEQRAAALWKLASGAAKLVIAPV 133

Query: 279 SCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             +   + + + Y+ + + L+ G+    + L+  LV   Y R D+  + G   V G  ++
Sbjct: 134 EAVCMKLFARDFYAALALTLRTGEEHIPEMLIEHLVSVGYTRVDVVEMPGQVTVRGGILD 193

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           ++   +E    R+  FG++IE +  F P T
Sbjct: 194 VYGPEMERPV-RIDFFGDEIESMRRFDPDT 222


>gi|294495366|ref|YP_003541859.1| ERCC4 domain protein [Methanohalophilus mahii DSM 5219]
 gi|292666365|gb|ADE36214.1| ERCC4 domain protein [Methanohalophilus mahii DSM 5219]
          Length = 754

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 15/103 (14%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++EII   + G F+VLV  ++  EGLDIP   LV   +      + S+   IQ  GR  
Sbjct: 415 QQVEIIDHFKQGNFNVLVATSVAEEGLDIPATDLVVFYEP-----IPSEIRSIQRKGRTG 469

Query: 680 RNVNSKVILYADTITKSIQLAIDE----TTRRREKQLEHNKKH 718
           R    +V++    +TK  +   DE    ++  REK+++ N K 
Sbjct: 470 RKHAGRVVVL---VTKGTR---DEGYYWSSANREKKMQGNIKQ 506


>gi|289679717|ref|ZP_06500607.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           syringae FF5]
          Length = 444

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 55/277 (19%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           A +L  E K F P   V +F  +    YD + P       D   ++ +S+  ++  + H 
Sbjct: 51  AERLEQELKFFAPTLPVLHFPDWETLPYDLFSPH-----QDIISQRIASLY-RLPELEHG 104

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
                      +VV   + ++ +   +      + L +G  ++ + + + L    Y+  D
Sbjct: 105 ----------VLVVPITTALHRLAPTKFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVD 154

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
                G F V G  I++FP     + +R+ +F ++IE +  F P T + I  VE++++  
Sbjct: 155 TVYEHGEFTVRGALIDLFPMG-SKLPFRIDLFDDEIETLRTFDPDTQRSIDKVESVRL-- 211

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD------LEMLET 435
                                L  R   L+KE       R  +R   D       + L +
Sbjct: 212 ---------------------LPAREFPLQKEEVTRFKARFRERFDVDFRRSPIFQDLSS 250

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             +   IE Y          E   TLF+Y+P+D+ +F
Sbjct: 251 GITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF 282


>gi|257054977|ref|YP_003132809.1| ATP-dependent DNA helicase RecG [Saccharomonospora viridis DSM
           43017]
 gi|256584849|gb|ACU95982.1| ATP-dependent DNA helicase RecG [Saccharomonospora viridis DSM
           43017]
          Length = 722

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  +   E+  ++R    G+ DVLV   ++  G+++P   L+ I+DAD+ G  
Sbjct: 538 GLRIGVLHGRLPGDEKDAVMRAFAAGELDVLVATTVVEVGVNVPNATLMIIMDADRFGV- 596

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R 
Sbjct: 597 ---SQLHQLRGRVGRG 609


>gi|209762788|gb|ACI79706.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|320646171|gb|EFX15111.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H- str.
           493-89]
 gi|320651466|gb|EFX19862.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H- str. H
           2687]
          Length = 444

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +VL
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR AR
Sbjct: 303 VATDVAARGIDIPDVSHVFNFD-----MPRSGDTYLHRIGRTAR 341


>gi|198451661|ref|XP_002137335.1| GA27149 [Drosophila pseudoobscura pseudoobscura]
 gi|198131589|gb|EDY67893.1| GA27149 [Drosophila pseudoobscura pseudoobscura]
          Length = 1366

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ++I+I+ D R G  +VLV  ++  EG+D+ E  ++   D        + T  +Q IGR  
Sbjct: 484 QQIQIMADFRSGTSNVLVATSIGEEGIDVGEVEMIVCFDICSS----NPTRFVQRIGRTG 539

Query: 680 RNVNSKVIL 688
           R  N +V++
Sbjct: 540 RKKNGEVVM 548


>gi|116180670|ref|XP_001220184.1| cell cycle control protein-related [Chaetomium globosum CBS 148.51]
 gi|118593420|sp|Q2HFP1|IF4A_CHAGB RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|88185260|gb|EAQ92728.1| cell cycle control protein-related [Chaetomium globosum CBS 148.51]
          Length = 397

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH ++   +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 272 TRRKVDWLTDKLQARDFTVSAMHGDMDQTQRDLIMKEFRSGSSRVLIATDLLARGIDVQQ 331

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 332 VSLVINYDLPANRENYI 348


>gi|15832696|ref|NP_311469.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           Sakai]
 gi|24113917|ref|NP_708427.1| ATP-dependent RNA helicase SrmB [Shigella flexneri 2a str. 301]
 gi|26248941|ref|NP_754981.1| ATP-dependent RNA helicase SrmB [Escherichia coli CFT073]
 gi|30063977|ref|NP_838148.1| ATP-dependent RNA helicase SrmB [Shigella flexneri 2a str. 2457T]
 gi|74313139|ref|YP_311558.1| ATP-dependent RNA helicase SrmB [Shigella sonnei Ss046]
 gi|91211903|ref|YP_541889.1| ATP-dependent RNA helicase SrmB [Escherichia coli UTI89]
 gi|110642738|ref|YP_670468.1| ATP-dependent RNA helicase SrmB [Escherichia coli 536]
 gi|110806520|ref|YP_690040.1| ATP-dependent RNA helicase SrmB [Shigella flexneri 5 str. 8401]
 gi|117624797|ref|YP_853710.1| ATP-dependent RNA helicase SrmB [Escherichia coli APEC O1]
 gi|157162056|ref|YP_001459374.1| ATP-dependent RNA helicase SrmB [Escherichia coli HS]
 gi|168748352|ref|ZP_02773374.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757760|ref|ZP_02782767.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4401]
 gi|168765031|ref|ZP_02790038.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768681|ref|ZP_02793688.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773496|ref|ZP_02798503.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778555|ref|ZP_02803562.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790377|ref|ZP_02815384.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC869]
 gi|170019141|ref|YP_001724095.1| ATP-dependent RNA helicase SrmB [Escherichia coli ATCC 8739]
 gi|170684258|ref|YP_001744765.1| ATP-dependent RNA helicase SrmB [Escherichia coli SMS-3-5]
 gi|188494838|ref|ZP_03002108.1| ATP-dependent RNA helicase SrmB [Escherichia coli 53638]
 gi|191174027|ref|ZP_03035544.1| ATP-dependent RNA helicase SrmB [Escherichia coli F11]
 gi|193064108|ref|ZP_03045193.1| ATP-dependent RNA helicase SrmB [Escherichia coli E22]
 gi|194429273|ref|ZP_03061800.1| ATP-dependent RNA helicase SrmB [Escherichia coli B171]
 gi|194432156|ref|ZP_03064445.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae 1012]
 gi|194437565|ref|ZP_03069661.1| ATP-dependent RNA helicase SrmB [Escherichia coli 101-1]
 gi|195936724|ref|ZP_03082106.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208805922|ref|ZP_03248259.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813312|ref|ZP_03254641.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820708|ref|ZP_03261028.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397789|ref|YP_002272051.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920055|ref|YP_002294139.1| ATP-dependent RNA helicase SrmB [Escherichia coli SE11]
 gi|215487920|ref|YP_002330351.1| ATP-dependent RNA helicase SrmB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217327593|ref|ZP_03443676.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           TW14588]
 gi|218547896|ref|YP_002381687.1| ATP-dependent RNA helicase SrmB [Escherichia fergusonii ATCC 35469]
 gi|218555158|ref|YP_002388071.1| ATP-dependent RNA helicase SrmB [Escherichia coli IAI1]
 gi|218559497|ref|YP_002392410.1| ATP-dependent RNA helicase SrmB [Escherichia coli S88]
 gi|218696204|ref|YP_002403871.1| ATP-dependent RNA helicase SrmB [Escherichia coli 55989]
 gi|218701090|ref|YP_002408719.1| ATP-dependent RNA helicase SrmB [Escherichia coli IAI39]
 gi|218706079|ref|YP_002413598.1| ATP-dependent RNA helicase SrmB [Escherichia coli UMN026]
 gi|227887612|ref|ZP_04005417.1| ATP-dependent RNA helicase [Escherichia coli 83972]
 gi|237705086|ref|ZP_04535567.1| ATP-dependent RNA helicase SrmB [Escherichia sp. 3_2_53FAA]
 gi|253772524|ref|YP_003035355.1| ATP-dependent RNA helicase SrmB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162551|ref|YP_003045659.1| ATP-dependent RNA helicase SrmB [Escherichia coli B str. REL606]
 gi|254794527|ref|YP_003079364.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017274|ref|ZP_05431139.1| ATP-dependent RNA helicase SrmB [Shigella sp. D9]
 gi|256021737|ref|ZP_05435602.1| ATP-dependent RNA helicase SrmB [Escherichia sp. 4_1_40B]
 gi|260845261|ref|YP_003223039.1| ATP-dependent RNA helicase SrmB [Escherichia coli O103:H2 str.
           12009]
 gi|260856670|ref|YP_003230561.1| ATP-dependent RNA helicase SrmB [Escherichia coli O26:H11 str.
           11368]
 gi|260869263|ref|YP_003235665.1| ATP-dependent RNA helicase SrmB [Escherichia coli O111:H- str.
           11128]
 gi|261222988|ref|ZP_05937269.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259462|ref|ZP_05951995.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283852|ref|YP_003500670.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str.
           CB9615]
 gi|293406018|ref|ZP_06650010.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1412]
 gi|293410992|ref|ZP_06654568.1| ATP-dependent RNA helicase SrmB [Escherichia coli B354]
 gi|293415845|ref|ZP_06658488.1| ATP-dependent RNA helicase SrmB [Escherichia coli B185]
 gi|293446931|ref|ZP_06663353.1| ATP-dependent RNA helicase SrmB [Escherichia coli B088]
 gi|298381818|ref|ZP_06991417.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1302]
 gi|300820745|ref|ZP_07100895.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300898309|ref|ZP_07116657.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|300904240|ref|ZP_07122099.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300920744|ref|ZP_07137150.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1]
 gi|300927702|ref|ZP_07143270.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300935710|ref|ZP_07150679.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|300951705|ref|ZP_07165525.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300958783|ref|ZP_07170895.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300974119|ref|ZP_07172469.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300982280|ref|ZP_07175991.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|301021938|ref|ZP_07185897.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|301024863|ref|ZP_07188500.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|301047215|ref|ZP_07194307.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|301302943|ref|ZP_07209071.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|301648340|ref|ZP_07248080.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|306814360|ref|ZP_07448522.1| ATP-dependent RNA helicase SrmB [Escherichia coli NC101]
 gi|307139213|ref|ZP_07498569.1| ATP-dependent RNA helicase SrmB [Escherichia coli H736]
 gi|312965492|ref|ZP_07779724.1| ATP-dependent RNA helicase srmB [Escherichia coli 2362-75]
 gi|312973178|ref|ZP_07787350.1| ATP-dependent RNA helicase srmB [Escherichia coli 1827-70]
 gi|331643200|ref|ZP_08344335.1| ATP-dependent RNA helicase SrmB [Escherichia coli H736]
 gi|331648323|ref|ZP_08349412.1| ATP-dependent RNA helicase SrmB [Escherichia coli M605]
 gi|331654039|ref|ZP_08355040.1| ATP-dependent RNA helicase SrmB [Escherichia coli M718]
 gi|331658721|ref|ZP_08359665.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA206]
 gi|331669327|ref|ZP_08370175.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA271]
 gi|331674026|ref|ZP_08374789.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA280]
 gi|331678573|ref|ZP_08379248.1| ATP-dependent RNA helicase SrmB [Escherichia coli H591]
 gi|331684226|ref|ZP_08384822.1| ATP-dependent RNA helicase SrmB [Escherichia coli H299]
 gi|332278266|ref|ZP_08390679.1| ATP-dependent RNA helicase SrmB [Shigella sp. D9]
 gi|26109347|gb|AAN81549.1|AE016764_231 ATP-dependent RNA helicase srmB [Escherichia coli CFT073]
 gi|13362913|dbj|BAB36865.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. Sakai]
 gi|24053020|gb|AAN44134.1| ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
 gi|30042233|gb|AAP17958.1| ATP-dependent RNA helicase [Shigella flexneri 2a str. 2457T]
 gi|73856616|gb|AAZ89323.1| ATP-dependent RNA helicase [Shigella sonnei Ss046]
 gi|91073477|gb|ABE08358.1| ATP-dependent RNA helicase [Escherichia coli UTI89]
 gi|110344330|gb|ABG70567.1| ATP-dependent RNA helicase SrmB [Escherichia coli 536]
 gi|110616068|gb|ABF04735.1| ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
 gi|115513921|gb|ABJ01996.1| putative transcriptional regulator YfiE [Escherichia coli APEC O1]
 gi|157067736|gb|ABV06991.1| ATP-dependent RNA helicase SrmB [Escherichia coli HS]
 gi|169754069|gb|ACA76768.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|170521976|gb|ACB20154.1| ATP-dependent RNA helicase SrmB [Escherichia coli SMS-3-5]
 gi|187770668|gb|EDU34512.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017076|gb|EDU55198.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4113]
 gi|188490037|gb|EDU65140.1| ATP-dependent RNA helicase SrmB [Escherichia coli 53638]
 gi|189003613|gb|EDU72599.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355321|gb|EDU73740.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362179|gb|EDU80598.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365096|gb|EDU83512.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370150|gb|EDU88566.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC869]
 gi|190905718|gb|EDV65340.1| ATP-dependent RNA helicase SrmB [Escherichia coli F11]
 gi|192929343|gb|EDV82952.1| ATP-dependent RNA helicase SrmB [Escherichia coli E22]
 gi|194412681|gb|EDX28976.1| ATP-dependent RNA helicase SrmB [Escherichia coli B171]
 gi|194419685|gb|EDX35765.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae 1012]
 gi|194423371|gb|EDX39362.1| ATP-dependent RNA helicase SrmB [Escherichia coli 101-1]
 gi|208725723|gb|EDZ75324.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734589|gb|EDZ83276.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740831|gb|EDZ88513.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159189|gb|ACI36622.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209762790|gb|ACI79707.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209762792|gb|ACI79708.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209762796|gb|ACI79710.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209913314|dbj|BAG78388.1| ATP-dependent RNA helicase [Escherichia coli SE11]
 gi|215265992|emb|CAS10401.1| ATP-dependent RNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|217319960|gb|EEC28385.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352936|emb|CAU98735.1| ATP-dependent RNA helicase [Escherichia coli 55989]
 gi|218355437|emb|CAQ88046.1| ATP-dependent RNA helicase [Escherichia fergusonii ATCC 35469]
 gi|218361926|emb|CAQ99526.1| ATP-dependent RNA helicase [Escherichia coli IAI1]
 gi|218366266|emb|CAR04013.1| ATP-dependent RNA helicase [Escherichia coli S88]
 gi|218371076|emb|CAR18903.1| ATP-dependent RNA helicase [Escherichia coli IAI39]
 gi|218433176|emb|CAR14074.1| ATP-dependent RNA helicase [Escherichia coli UMN026]
 gi|222034281|emb|CAP77022.1| ATP-dependent RNA helicase srmB [Escherichia coli LF82]
 gi|226901452|gb|EEH87711.1| ATP-dependent RNA helicase SrmB [Escherichia sp. 3_2_53FAA]
 gi|227835962|gb|EEJ46428.1| ATP-dependent RNA helicase [Escherichia coli 83972]
 gi|242378176|emb|CAQ32951.1| SrmB, DEAD-box RNA helicase [Escherichia coli BL21(DE3)]
 gi|253323568|gb|ACT28170.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974452|gb|ACT40123.1| ATP-dependent RNA helicase [Escherichia coli B str. REL606]
 gi|253978619|gb|ACT44289.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
 gi|254593927|gb|ACT73288.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|257755319|dbj|BAI26821.1| ATP-dependent RNA helicase SrmB [Escherichia coli O26:H11 str.
           11368]
 gi|257760408|dbj|BAI31905.1| ATP-dependent RNA helicase SrmB [Escherichia coli O103:H2 str.
           12009]
 gi|257765619|dbj|BAI37114.1| ATP-dependent RNA helicase SrmB [Escherichia coli O111:H- str.
           11128]
 gi|281179625|dbj|BAI55955.1| ATP-dependent RNA helicase [Escherichia coli SE15]
 gi|281601988|gb|ADA74972.1| ATP-dependent RNA helicase [Shigella flexneri 2002017]
 gi|284922526|emb|CBG35613.1| ATP-dependent RNA helicase [Escherichia coli 042]
 gi|290763725|gb|ADD57686.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str.
           CB9615]
 gi|291323761|gb|EFE63189.1| ATP-dependent RNA helicase SrmB [Escherichia coli B088]
 gi|291428226|gb|EFF01253.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1412]
 gi|291433493|gb|EFF06472.1| ATP-dependent RNA helicase SrmB [Escherichia coli B185]
 gi|291471460|gb|EFF13944.1| ATP-dependent RNA helicase SrmB [Escherichia coli B354]
 gi|294490578|gb|ADE89334.1| ATP-dependent RNA helicase SrmB [Escherichia coli IHE3034]
 gi|298279260|gb|EFI20774.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1302]
 gi|299881405|gb|EFI89616.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|300300892|gb|EFJ57277.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|300308942|gb|EFJ63462.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300314531|gb|EFJ64315.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300357971|gb|EFJ73841.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|300396394|gb|EFJ79932.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|300403773|gb|EFJ87311.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300408834|gb|EFJ92372.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|300412315|gb|EFJ95625.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1]
 gi|300449067|gb|EFK12687.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300459099|gb|EFK22592.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|300464255|gb|EFK27748.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300526498|gb|EFK47567.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300841878|gb|EFK69638.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|301073616|gb|EFK88422.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|305851754|gb|EFM52206.1| ATP-dependent RNA helicase SrmB [Escherichia coli NC101]
 gi|307554595|gb|ADN47370.1| ATP-dependent RNA helicase SrmB [Escherichia coli ABU 83972]
 gi|307625875|gb|ADN70179.1| ATP-dependent RNA helicase SrmB [Escherichia coli UM146]
 gi|309702962|emb|CBJ02293.1| ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
 gi|310331773|gb|EFP99008.1| ATP-dependent RNA helicase srmB [Escherichia coli 1827-70]
 gi|312289912|gb|EFR17800.1| ATP-dependent RNA helicase srmB [Escherichia coli 2362-75]
 gi|312947148|gb|ADR27975.1| ATP-dependent RNA helicase SrmB [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313648255|gb|EFS12699.1| ATP-dependent RNA helicase srmB [Shigella flexneri 2a str. 2457T]
 gi|315256604|gb|EFU36572.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1]
 gi|315287992|gb|EFU47394.1| DEAD/DEAH box helicase [Escherichia coli MS 110-3]
 gi|315294533|gb|EFU53881.1| DEAD/DEAH box helicase [Escherichia coli MS 153-1]
 gi|315300543|gb|EFU59772.1| DEAD/DEAH box helicase [Escherichia coli MS 16-3]
 gi|315615838|gb|EFU96470.1| ATP-dependent RNA helicase srmB [Escherichia coli 3431]
 gi|320188917|gb|EFW63576.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC1212]
 gi|320196412|gb|EFW71036.1| ATP-dependent RNA helicase SrmB [Escherichia coli WV_060327]
 gi|320200140|gb|EFW74729.1| ATP-dependent RNA helicase SrmB [Escherichia coli EC4100B]
 gi|320640825|gb|EFX10319.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           G5101]
 gi|320657068|gb|EFX24887.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662733|gb|EFX30072.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667553|gb|EFX34473.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323156234|gb|EFZ42393.1| ATP-dependent RNA helicase srmB [Escherichia coli EPECa14]
 gi|323159233|gb|EFZ45223.1| ATP-dependent RNA helicase srmB [Escherichia coli E128010]
 gi|323167785|gb|EFZ53480.1| ATP-dependent RNA helicase srmB [Shigella sonnei 53G]
 gi|323177294|gb|EFZ62882.1| ATP-dependent RNA helicase srmB [Escherichia coli 1180]
 gi|323184544|gb|EFZ69918.1| ATP-dependent RNA helicase srmB [Escherichia coli 1357]
 gi|323188309|gb|EFZ73601.1| ATP-dependent RNA helicase srmB [Escherichia coli RN587/1]
 gi|323936316|gb|EGB32607.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323941161|gb|EGB37346.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|323944576|gb|EGB40645.1| DEAD/DEAH box helicase [Escherichia coli H120]
 gi|323949230|gb|EGB45121.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323955812|gb|EGB51570.1| DEAD/DEAH box helicase [Escherichia coli H263]
 gi|323961191|gb|EGB56804.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323968024|gb|EGB63436.1| DEAD/DEAH box helicase [Escherichia coli M863]
 gi|323978394|gb|EGB73479.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
 gi|324008433|gb|EGB77652.1| DEAD/DEAH box helicase [Escherichia coli MS 57-2]
 gi|324014379|gb|EGB83598.1| DEAD/DEAH box helicase [Escherichia coli MS 60-1]
 gi|324020034|gb|EGB89253.1| DEAD/DEAH box helicase [Escherichia coli MS 117-3]
 gi|324118214|gb|EGC12110.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|326340382|gb|EGD64186.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           1125]
 gi|326345065|gb|EGD68809.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           1044]
 gi|327252286|gb|EGE63958.1| ATP-dependent RNA helicase srmB [Escherichia coli STEC_7v]
 gi|330912344|gb|EGH40854.1| ATP-dependent RNA helicase SrmB [Escherichia coli AA86]
 gi|331039998|gb|EGI12218.1| ATP-dependent RNA helicase SrmB [Escherichia coli H736]
 gi|331042872|gb|EGI15013.1| ATP-dependent RNA helicase SrmB [Escherichia coli M605]
 gi|331048888|gb|EGI20964.1| ATP-dependent RNA helicase SrmB [Escherichia coli M718]
 gi|331054386|gb|EGI26413.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA206]
 gi|331064521|gb|EGI36432.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA271]
 gi|331069299|gb|EGI40691.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA280]
 gi|331075033|gb|EGI46353.1| ATP-dependent RNA helicase SrmB [Escherichia coli H591]
 gi|331079178|gb|EGI50380.1| ATP-dependent RNA helicase SrmB [Escherichia coli H299]
 gi|332089185|gb|EGI94292.1| ATP-dependent RNA helicase srmB [Shigella dysenteriae 155-74]
 gi|332100618|gb|EGJ03964.1| ATP-dependent RNA helicase SrmB [Shigella sp. D9]
 gi|332344451|gb|AEE57785.1| ATP-dependent RNA helicase SrmB [Escherichia coli UMNK88]
 gi|332753986|gb|EGJ84360.1| ATP-dependent RNA helicase srmB [Shigella flexneri 4343-70]
 gi|332755796|gb|EGJ86154.1| ATP-dependent RNA helicase srmB [Shigella flexneri 2747-71]
 gi|332761970|gb|EGJ92243.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-671]
 gi|332766578|gb|EGJ96783.1| srmB, DEAD-box RNA helicase [Shigella flexneri 2930-71]
 gi|333000838|gb|EGK20410.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-218]
 gi|333001669|gb|EGK21236.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-272]
 gi|333015945|gb|EGK35280.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-227]
 gi|333016831|gb|EGK36157.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-304]
          Length = 444

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +VL
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR AR
Sbjct: 303 VATDVAARGIDIPDVSHVFNFD-----MPRSGDTYLHRIGRTAR 341


>gi|328466166|gb|EGF37323.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes 1816]
          Length = 682

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 507 MHGKLLPADKEQIMRDFNNKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 562

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  + S  IL AD  T+
Sbjct: 563 HQLRGRVGRGADQSYCILIADPKTE 587


>gi|297156905|gb|ADI06617.1| ATP-dependent DNA helicase RecG [Streptomyces bingchenggensis
           BCW-1]
          Length = 743

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 597 DLTEYLYE---RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           D+ E L +   R +RV  ++  ++   + E++R    G+ DVLV   ++  G+++P    
Sbjct: 547 DVAEQLAKGPLRELRVEVLYGRMQPEAKDEVMRRFAAGEVDVLVATTVIEVGVNVPNATA 606

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + I+DAD+ G     + L Q  GR  R   + + L
Sbjct: 607 MVIMDADRFGV----SQLHQLRGRVGRGSAAGLCL 637


>gi|260753800|ref|YP_003226693.1| transcription-repair coupling factor [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258553163|gb|ACV76109.1| transcription-repair coupling factor [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 1167

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 597 DLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           DL ++L E+   +R++  H ++   E    +      KFDVL+   ++  GLDIP    +
Sbjct: 842 DLEKFLSEQVPEIRFVIAHGQMAATEVENRMSAFYDKKFDVLLSTTIVESGLDIPSANTM 901

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
            +  AD+ G     + L Q  GR  R   SK   YA  +T  +  +I ET  +R
Sbjct: 902 IVYRADRFGL----SQLYQIRGRVGR---SKTRAYA-YLTTPVNHSISETAEKR 947



 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 21/92 (22%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q+   L  G  +++++L++ L    Y++ +     G + + G  ++++P+ L   A R+ 
Sbjct: 131 QLCQTLAAGVRLDREKLVTLLRAHGYQQSETVSQSGDYAIRGGLVDLWPAGLP-YALRLD 189

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
            FG++IE + +F P T + I  ++   +   S
Sbjct: 190 FFGDEIETLRQFDPTTQRSIAEIDKFNLLPAS 221


>gi|240128422|ref|ZP_04741083.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae SK-93-1035]
          Length = 1234

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 17/199 (8%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ +    ++  A   
Sbjct: 46  ALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ----IKSGAA-- 98

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
                D + V   + +  +  V   +     LK G +++   L + LV   Y      + 
Sbjct: 99  -----DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVA 153

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
            G F V G  +++FP   E   +R+ +F ++I+ I  F   T + I  V  I++     +
Sbjct: 154 AGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDSIKTFDTDTQRTISPVSEIRLLPAHEF 212

Query: 386 VTPRPTLNTAMKYIKEELK 404
               PT + A K  +   +
Sbjct: 213 ----PTDSEAQKIFRSRFR 227



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 923  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 979

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 980  -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1015


>gi|223043793|ref|ZP_03613836.1| putative primosomal protein N' [Staphylococcus capitis SK14]
 gi|222442890|gb|EEE48992.1| putative primosomal protein N' [Staphylococcus capitis SK14]
          Length = 802

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIG 676
           ++ D   GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  G
Sbjct: 595 LLNDFEAGKGDILLGTQMIAKGLDYPNITLVGVLNADTMLNLPDFRASERTYQLLTQVSG 654

Query: 677 RAARN 681
           RA R+
Sbjct: 655 RAGRH 659


>gi|222151060|ref|YP_002560214.1| ATP-dependent DNA helicase [Macrococcus caseolyticus JCSC5402]
 gi|222120183|dbj|BAH17518.1| ATP-dependent DNA helicase [Macrococcus caseolyticus JCSC5402]
          Length = 678

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H ++KT E+ E++   +   FDV+V   ++  G+++P   ++ I DA++ G    
Sbjct: 502 KVGLLHGKMKTEEKDEVMNKFQNHDFDVIVSTTVVEVGVNVPNATMIVIYDAERFGL--- 558

Query: 668 KTSLIQTIGRAARN 681
            ++L Q  GR  R+
Sbjct: 559 -STLHQLRGRVGRS 571


>gi|183231239|ref|XP_650493.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|169802550|gb|EAL45107.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 722

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 72/153 (47%), Gaps = 9/153 (5%)

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           ++  VE+   + ++E +   +     +G RI++   T++  ++L + L ERNI    +H 
Sbjct: 361 IEQIVEVIETKKKIERLISIVLEQNNKGGRIIIFTETQKNCDELYQNLMERNINCLLLHG 420

Query: 615 EVKTLERIEIIRDLRLG-KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            +  ++R   I++ + G    +L+  +L   GLD+   GL  +++ D    L      + 
Sbjct: 421 GIDQIDRQNTIQEFKSGIGRTILITTSLCARGLDVK--GLELVINYDCPNHLEDYVHRVG 478

Query: 674 TIGRAARNVNSKVIL------YADTITKSIQLA 700
             GRA +   +   +      Y++ I K++ L+
Sbjct: 479 RTGRAGKRGKAITFITKEEERYSEDIVKALTLS 511


>gi|116513258|ref|YP_812164.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116092573|gb|ABJ57726.1| DNA or RNA helicase of superfamily II [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 921

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 7/120 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRM--AEDLTEYLYERNIRVRYMHSEVKTLE 620
            A+ +V  +  E++     G R    V   R   A  L E   ++    + + ++     
Sbjct: 393 GAKKRVSYLLKELDYYGYSGPRPCGLVFCSRQEEARQLAEAFTQQGQPAQSLTNQDSPAV 452

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R + ++DL  G+   LV ++L  EG+DIP    + +L A +     S T  IQ +GR  R
Sbjct: 453 RRQAVKDLESGRLHYLVTVDLFNEGVDIPALNQIVMLRATQ-----SATVFIQQLGRGLR 507


>gi|157819755|ref|NP_001102328.1| hypothetical protein LOC364073 [Rattus norvegicus]
 gi|149040979|gb|EDL94936.1| rCG20177 [Rattus norvegicus]
          Length = 659

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L IL+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 431 DLLNATGKDSL-ILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 489

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 490 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 548

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 549 ---NITKDL 554


>gi|85105148|ref|XP_961898.1| hypothetical protein NCU08270 [Neurospora crassa OR74A]
 gi|74616659|sp|Q7S8J7|DCL1_NEUCR RecName: Full=Dicer-like protein 1; Includes: RecName:
           Full=Endoribonuclease dcl-1; Includes: RecName:
           Full=ATP-dependent helicase dcl-1
 gi|28923482|gb|EAA32662.1| predicted protein [Neurospora crassa OR74A]
          Length = 1584

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+++++   ++  IIR  +LG+ + L   ++  EGLDIP+C +V   D        +   
Sbjct: 513 YVNAKINFQQQNRIIRKFKLGEINCLFATSVAEEGLDIPDCNIVIRFD-----LYDTLIQ 567

Query: 671 LIQTIGRAAR 680
            IQ+ GRA R
Sbjct: 568 CIQSRGRARR 577


>gi|330502559|ref|YP_004379428.1| transcription-repair coupling factor [Pseudomonas mendocina NK-01]
 gi|328916845|gb|AEB57676.1| transcription-repair coupling factor [Pseudomonas mendocina NK-01]
          Length = 1145

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 62/308 (20%), Positives = 115/308 (37%), Gaps = 57/308 (18%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+      R  +V+      A +L  E   F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASNAGRFTLVLTEGSQSAERLQEELAFFAPDLPVLHFPDWETLPYDV 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESY 290
           + P                 ++ I   R +A   L + +  I+V  ++  ++ +      
Sbjct: 81  FSP-----------------HQDIISQRIAALYRLPQLSRGILVVPIATALHRLAPKRFL 123

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
               + L +G  ++ +++ + L    Y+  D     G F V G  I++FP    D  +R+
Sbjct: 124 LGSSLVLDVGQKLDVEQMRTRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMG-SDTPYRI 182

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F ++IE +  F P   + +  VE+I++                       L  R   L
Sbjct: 183 DLFDDEIETLRTFDPENQRSVDKVESIRL-----------------------LPAREFPL 219

Query: 411 EKEGRLLEAQRLEQRITYDL------EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
           EK+       R  +R   D       + L +  +   IE Y          E   TLF+Y
Sbjct: 220 EKKAVTDFRGRFRERFDVDFRRCPIYQDLSSGITPAGIEYYLPLFF-----EETGTLFDY 274

Query: 465 IPEDSLLF 472
           +P D+ +F
Sbjct: 275 LPSDTQVF 282



 Score = 37.7 bits (86), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 30/103 (29%)

Query: 605 RNIRVRYMHSEVKTLERI-----EIIRDLRLG---------------------KFDVLVG 638
           R  +V Y+H++VKT+E+      E++ + R+G                     +F+VLV 
Sbjct: 807 RGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRERDLEQVMSDFYHKRFNVLVA 866

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             ++  G+D+P    + I  ADK G       L Q  GR  R+
Sbjct: 867 STIIETGIDVPSANTIIIERADKFGL----AQLHQLRGRVGRS 905


>gi|325497055|gb|EGC94914.1| transcription-repair coupling factor [Escherichia fergusonii
           ECD227]
          Length = 1148

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G           + +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 G---------HALMMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
             D+ +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 -SDLPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|302854279|ref|XP_002958649.1| hypothetical protein VOLCADRAFT_69703 [Volvox carteri f.
           nagariensis]
 gi|300256038|gb|EFJ40315.1| hypothetical protein VOLCADRAFT_69703 [Volvox carteri f.
           nagariensis]
          Length = 582

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 16/158 (10%)

Query: 571 VYDEINLAAQQGLRILLTVL---TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +  E+   A  G  + LT++    K   +++   L E  I    +H  +   ER   +RD
Sbjct: 375 ISSEVAAEASGGPPMPLTIVFVERKNRCDEVAAALQEDGIPANALHGGLGQFEREAALRD 434

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADK--EGFLR--SKTSLIQTIGRAARNVN 683
              G   VLV  +L   GLD+   G V  +D  K  E ++    +T    T GRA    N
Sbjct: 435 FAKGHIKVLVATDLASRGLDVKGIGHVINMDLPKTFEDYVHRIGRTGRAGTKGRATSLWN 494

Query: 684 SKVILYADTITKSI---------QLAIDETTRRREKQL 712
            +       I +++           A  +  R+ E+QL
Sbjct: 495 DRDSFLVAQIKQALAELEKGNGFAFATGKEARKEERQL 532


>gi|196232968|ref|ZP_03131817.1| primosomal protein N' [Chthoniobacter flavus Ellin428]
 gi|196222946|gb|EDY17467.1| primosomal protein N' [Chthoniobacter flavus Ellin428]
          Length = 741

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           E +   R GK D+LVG  ++ +GL  P   LV I++AD    L       R+   L Q  
Sbjct: 536 ETLTAFRTGKIDILVGTQMIAKGLHFPNVTLVGIINADLGLHLPDFRAGERTFQLLTQVA 595

Query: 676 GRAAR-NVNSKVILYADT-ITKSIQLA 700
           GRA R +V  +V + + T  + SIQ A
Sbjct: 596 GRAGRGDVEGEVFVQSFTPFSPSIQHA 622


>gi|194098853|ref|YP_002001917.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae NCCP11945]
 gi|240115873|ref|ZP_04729935.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae PID18]
 gi|193934143|gb|ACF29967.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae NCCP11945]
          Length = 1234

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 17/199 (8%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ +    ++  A   
Sbjct: 46  ALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ----IKSGAA-- 98

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
                D + V   + +  +  V   +     LK G +++   L + LV   Y      + 
Sbjct: 99  -----DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVA 153

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
            G F V G  +++FP   E   +R+ +F ++I+ I  F   T + I  V  I++     +
Sbjct: 154 AGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDSIKTFDTDTQRTISPVSEIRLLPAHEF 212

Query: 386 VTPRPTLNTAMKYIKEELK 404
               PT + A K  +   +
Sbjct: 213 ----PTDSEAQKIFRSRFR 227



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 923  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 979

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 980  -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1015


>gi|150006493|ref|YP_001301237.1| putative helicase [Bacteroides vulgatus ATCC 8482]
 gi|149934917|gb|ABR41615.1| putative helicase [Bacteroides vulgatus ATCC 8482]
          Length = 784

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 13/180 (7%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           T +  +Y+ +   A  G + ++  ++   A  +  Y     +    + S    LER E++
Sbjct: 230 TGIRQLYESVRRYAA-GKKGIVYAVSIAHARQIAAYYSLHGVESVAIDSRTPALERKELV 288

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL---IQTIGRAARNV 682
            D R GK  VLV +++  EG D P+   V +         R   SL   +Q +GR  R  
Sbjct: 289 EDFRRGKISVLVNVDIFSEGFDCPDVEFVQL--------ARPTLSLAKYLQQVGRGLRKS 340

Query: 683 NSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           ++K   +  D +       +    R  E   E     N  P +  E     +   L ED+
Sbjct: 341 DNKESCMLIDNVGLHRIFGLPVRDRDWEAMFEGRMAGNAQPWTRMENSGLSVSCSLSEDS 400


>gi|126307972|ref|XP_001366879.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 751

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+ E+I+  R G  ++LV  ++  EGLDIP+C ++   D      L ++ S++Q  GRA
Sbjct: 492 EQREVIQRFREGTLNLLVATSVAEEGLDIPQCNMIVRYD-----LLTNEISMMQARGRA 545


>gi|53713588|ref|YP_099580.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
 gi|60681868|ref|YP_212012.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|253565577|ref|ZP_04843032.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|265763909|ref|ZP_06092477.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|52216453|dbj|BAD49046.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
 gi|60493302|emb|CAH08086.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|251945856|gb|EES86263.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|263256517|gb|EEZ27863.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|301163360|emb|CBW22910.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
          Length = 418

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 9/107 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   +++ + L    + V  MHS+++ ++R  I+ + + G+ ++LV  +++ 
Sbjct: 246 RVIIFASSKIKVKEVAKALKMMKLNVGEMHSDLEQVQREFIMHEFKSGRINILVATDIVS 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+DI +  LV   D   D E +       +  IGR AR  N  V L
Sbjct: 306 RGIDIDDIRLVINFDVPHDSEDY-------VHRIGRTARANNDGVAL 345


>gi|325518010|gb|EGC97823.1| putative helicase [Burkholderia sp. TJI49]
          Length = 1002

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 18/211 (8%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSE 615
           P+E   A    E VYD I   A      L+ V T+R AE +  +L ER  +  +   H  
Sbjct: 183 PLEPVMATDVWEQVYDRIAALAAAHRTTLVFVNTRRTAERMARHLAERLGKDAIAAHHGS 242

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ G+  +LV    L  G+DI +  LV      + G  R     +Q +
Sbjct: 243 LAKEHRFDAEQRLKRGELKLLVATASLELGIDIGDVDLVC-----QVGSPRGIAPFLQRV 297

Query: 676 GRAARNVNS--KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           GR+  +V    K  L+  +  + ++ A           L+  ++  ++   + +  ++V+
Sbjct: 298 GRSGHHVGGMPKGRLFPLSRDELVECA---------ALLDCVRRGELDTLRIPQAPLDVL 348

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
              ++ +AA      DA   S ++    AHL
Sbjct: 349 AQQIVAEAACAEWQEDALYASFTRAAPYAHL 379


>gi|325067248|ref|ZP_08125921.1| transcription-repair coupling factor [Actinomyces oris K20]
          Length = 173

 Score = 42.4 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 9/129 (6%)

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           E   PR DT  ++ S +          A R L+     ++   ++   G+G +E      
Sbjct: 19  ERLSPRADTVAQRLSVLRRLAHPEEGGAIRVLIVPVRALLAPVIA---GLGELEP----- 70

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           VQL  G +V  +E    L    Y R D+   RG + V G  +++FP   E    RV  FG
Sbjct: 71  VQLAPGLTVGLEETARRLEAAAYTRVDMVESRGEYAVRGGILDVFPPS-EPRPVRVDFFG 129

Query: 355 NDIEEISEF 363
           ++I+E+S F
Sbjct: 130 DEIDEVSSF 138


>gi|325964224|ref|YP_004242130.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470311|gb|ADX73996.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 710

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 8/160 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ++  V TK   EDL + L  R  +   ++ ++   +R   +  L+ G+ D+LV  ++   
Sbjct: 315 VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAAR 374

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R+ ++  IL+     K +  +I+
Sbjct: 375 GLDVERISHVINYDIPHDTESYVHR----IGRTGRAGRSGDA--ILFMTPREKYLLRSIE 428

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + TR+  +Q+       +N   + +    + + +  ED A
Sbjct: 429 KATRQPVEQMHLPTAETVNTLRLGKFAERITETLASEDVA 468


>gi|322515551|ref|ZP_08068533.1| DNA helicase RecG [Actinobacillus ureae ATCC 25976]
 gi|322118394|gb|EFX90657.1| DNA helicase RecG [Actinobacillus ureae ATCC 25976]
          Length = 693

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL   L   ++R+  +H  +K  E+ EI+ + +    D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLQRAL--PDLRIGLVHGRMKPQEKQEIMAEFKAANIDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I ++++ G       L Q  GR  R   +   V+LY   + K
Sbjct: 567 IENSERLGL----AQLHQLRGRVGRGATASHCVLLYKPPLGK 604


>gi|313890723|ref|ZP_07824348.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120824|gb|EFR43938.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 538

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV  ++   GLDI  
Sbjct: 248 TKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILVATDVAARGLDISN 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              V   D       +   S +  IGR  R
Sbjct: 308 VTHVYNYD-----ITQDPESYVHRIGRTGR 332


>gi|307111380|gb|EFN59614.1| hypothetical protein CHLNCDRAFT_29172 [Chlorella variabilis]
          Length = 402

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + + N  V  MH ++   ER  I+ + R
Sbjct: 261 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMRQNNFTVSAMHGDMPQKEREAIMDEFR 315

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  LV   D        S+   I  IGR+ R
Sbjct: 316 KGATRVLITTDVWARGLDVQQVSLVINYD-----LPNSRELYIHRIGRSGR 361


>gi|283856518|ref|YP_163381.2| transcription-repair coupling factor [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|283775523|gb|AAV90270.2| transcription-repair coupling factor [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 1167

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 597 DLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           DL ++L E+   +R++  H ++   E    +      KFDVL+   ++  GLDIP    +
Sbjct: 842 DLEKFLSEQVPEIRFVIAHGQMAATEVENRMSAFYDKKFDVLLSTTIVESGLDIPSANTM 901

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
            +  AD+ G     + L Q  GR  R   SK   YA  +T  +  +I ET  +R
Sbjct: 902 IVYRADRFGL----SQLYQIRGRVGR---SKTRAYA-YLTTPVNHSISETAEKR 947



 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 21/92 (22%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q+   L  G  +++++L++ L    Y++ +     G + + G  ++++P+ L   A R+ 
Sbjct: 131 QLCQTLAAGVRLDREKLVTLLRAHGYQQSETVSQSGDYAIRGGLVDLWPAGLP-YALRLD 189

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
            FG++IE + +F P T + I  ++   +   S
Sbjct: 190 FFGDEIETLRQFDPTTQRSIAEIDKFNLLPAS 221


>gi|261340877|ref|ZP_05968735.1| ATP-dependent RNA helicase SrmB [Enterobacter cancerogenus ATCC
           35316]
 gi|288317308|gb|EFC56246.1| ATP-dependent RNA helicase SrmB [Enterobacter cancerogenus ATCC
           35316]
          Length = 442

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  +   R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +VL
Sbjct: 243 LKQEDATRTIVFVRKRERVHELAEILRNAGINNCYLEGEMAQVKRTEGIKRLTDGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR  R
Sbjct: 303 VATDVAARGIDIPDVSHVINFD-----MPRSGDTYLHRIGRTGR 341


>gi|134057429|emb|CAK47767.1| unnamed protein product [Aspergillus niger]
          Length = 587

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 5/106 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A    R L+ V +K  A+ L +YLY   +    +HS+    ER + +R  R  K  +L
Sbjct: 391 LLAMPPSRTLIFVNSKTQADFLDDYLYNMGLPSTSIHSDRTQREREDALRAFRTAKCPIL 450

Query: 637 VGINLLREGLDIPECGLVAILDADK--EGFLRSKTSLIQTIGRAAR 680
           V   +   GLDI     V   D  +   G +   T  +  IGR AR
Sbjct: 451 VATGVSARGLDIKNVMHVVNFDLPRVQHGGI---TEYVHRIGRTAR 493


>gi|109092957|ref|XP_001085318.1| PREDICTED: eukaryotic initiation factor 4A-I-like isoform 4 [Macaca
           mulatta]
          Length = 378

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TQRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGL 653
             L
Sbjct: 341 VSL 343


>gi|41469332|gb|AAS07188.1| putative ribonuclease III, 5'-partial (with alternative splicing)
           [Oryza sativa Japonica Group]
          Length = 416

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI+   R GK  +++   +L EGLD+P C LV   D        +  S IQ+ GR AR  
Sbjct: 55  EIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSA-----TVCSFIQSRGR-ARME 108

Query: 683 NSKVIL 688
           NS  +L
Sbjct: 109 NSDYLL 114


>gi|58336753|ref|YP_193338.1| RNA helicase [Lactobacillus acidophilus NCFM]
 gi|227903314|ref|ZP_04021119.1| ATP-dependent RNA helicase [Lactobacillus acidophilus ATCC 4796]
 gi|58254070|gb|AAV42307.1| RNA helicase [Lactobacillus acidophilus NCFM]
 gi|227868943|gb|EEJ76364.1| ATP-dependent RNA helicase [Lactobacillus acidophilus ATCC 4796]
          Length = 453

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++LT++L ++ ++V  +H  V   ER   +R +  G++  +V  +L   GLDI  
Sbjct: 253 TKQKVDELTKFLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQYVVASDLAARGLDIDG 312

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +       R    +I  IGR  RN
Sbjct: 313 VSLVVNYE-----IPRDIEFVIHRIGRTGRN 338


>gi|115473749|ref|NP_001060473.1| Os07g0647900 [Oryza sativa Japonica Group]
 gi|143456709|sp|Q5K5B6|RH57_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 57
 gi|22093706|dbj|BAC07000.1| putative ATP-dependent RNA helicase [Oryza sativa Japonica Group]
 gi|23495827|dbj|BAC20037.1| putative ATP-dependent RNA helicase [Oryza sativa Japonica Group]
 gi|113612009|dbj|BAF22387.1| Os07g0647900 [Oryza sativa Japonica Group]
 gi|125601315|gb|EAZ40891.1| hypothetical protein OsJ_25369 [Oryza sativa Japonica Group]
          Length = 540

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 53/96 (55%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L + L   ++R   +H+++   +R + + +LR GK  VL+   ++  
Sbjct: 388 VLIFVQSKERAKELYKELAFDDVRADVIHADLDEEQRQDAVDNLRAGKTWVLIATEVIAR 447

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G+  +++ D   F  S ++ I  IGR+ R
Sbjct: 448 GMDFK--GVNCVINYD---FPESASAYIHRIGRSGR 478


>gi|70994563|ref|XP_752059.1| ATP dependent RNA helicase (Dbp1) [Aspergillus fumigatus Af293]
 gi|74671260|sp|Q4WP13|DED1_ASPFU RecName: Full=ATP-dependent RNA helicase ded1
 gi|66849693|gb|EAL90021.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus fumigatus
           Af293]
          Length = 674

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L  +      +H +    ER   +   R G+  +LV   +   G
Sbjct: 454 LIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARG 513

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 514 LDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 549


>gi|328789292|ref|XP_001120427.2| PREDICTED: probable ATP-dependent RNA helicase DDX52-like, partial
           [Apis mellifera]
          Length = 512

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L   L    I V  +H++    +R  ++R  R GK  VL+   L+  
Sbjct: 327 VLVFVQSKERAQELFNELIYDGINVDVIHADRTQTQRDNVVRCFREGKIWVLICTELMAR 386

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D     LV   D     F  S  S I  IGR  R
Sbjct: 387 GIDFKGINLVINYD-----FPSSAISYIHRIGRTGR 417


>gi|324113103|gb|EGC07079.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
 gi|325496344|gb|EGC94203.1| ATP-dependent RNA helicase SrmB [Escherichia fergusonii ECD227]
          Length = 444

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +VL
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR AR
Sbjct: 303 VATDVAARGIDIPDVSHVFNFD-----MPRSGDTYLHRIGRTAR 341


>gi|307638596|gb|ACY78116.2| RNA helicase LGP2 [Ctenopharyngodon idella]
          Length = 680

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 6/60 (10%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+D RLG  ++L+  ++  EGLDI EC LV      + G L ++ +  Q  GR AR +NS
Sbjct: 425 IKDFRLGHLNLLISTSVAEEGLDIAECNLVV-----RYGLLTNEIAQQQASGR-ARALNS 478


>gi|308172326|ref|YP_003919031.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605190|emb|CBI41561.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens DSM 7]
          Length = 511

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L  R      +H ++   +R+  +R  + G  +VLV  ++   GLDI  
Sbjct: 267 TKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDI-- 324

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   + + + +     KS+  AI++TT+R+
Sbjct: 325 SGVTHVYNFD---VPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRK 380


>gi|306834606|ref|ZP_07467718.1| transcription-repair coupling factor [Streptococcus bovis ATCC
           700338]
 gi|304423242|gb|EFM26396.1| transcription-repair coupling factor [Streptococcus bovis ATCC
           700338]
          Length = 1169

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 60/307 (19%), Positives = 128/307 (41%), Gaps = 33/307 (10%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G++GS +   +A   +A +   +V+   +    +L S+  +    + V  F  + D
Sbjct: 30  QLIMGLSGSSRALAIASAYQANEEKIVVITSTQNEVEKLASDLSSLIGEDKVYTF--FAD 87

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                 ++  +   ++K  S  E ++ ++ +    +L      + S V     + + E Y
Sbjct: 88  DVAAAEFIFAS---MDKAHSRLEVLNFLQDNKQSGIL------ITSLVGARVLLPNPEIY 138

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR--GTFRVCGDSIEIFPSHLEDVAW 348
           ++  +   +G+     +++  L    Y  Q +  +R  G F   GD ++I+     D  +
Sbjct: 139 AESQLNFVVGEDYNIDKVVKVLSNVGY--QKVSQVRNPGEFSRRGDIVDIY-EMTADYPY 195

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FG++++ I +F   T + + N+E + I      +        A K  +        
Sbjct: 196 RLEFFGDEVDGIRQFDAETQKSLSNIEQVTISPADELILSEEDFARASKAFE-------- 247

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
                   LE  + EQ+  Y  E+   T      ++  R+L+     E   TL +YIP+ 
Sbjct: 248 ------TFLETAKDEQQ-AYLSELYAATQEQYKHQDIRRFLSLFYAKE--WTLLDYIPKG 298

Query: 469 SLLFVDE 475
           + +F D+
Sbjct: 299 TPVFFDD 305


>gi|299541897|ref|ZP_07052220.1| hypothetical protein BFZC1_23144 [Lysinibacillus fusiformis ZC1]
 gi|298725635|gb|EFI66276.1| hypothetical protein BFZC1_23144 [Lysinibacillus fusiformis ZC1]
          Length = 180

 Score = 42.4 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           K  ++ +RK+M  A D   FEEAA++RDE+K L+    F+G D
Sbjct: 136 KKQIEDIRKRMKSAVDEEQFEEAAKLRDEVKELEKHLQFEGGD 178


>gi|256831947|ref|YP_003160674.1| DEAD/DEAH box helicase domain-containing protein [Jonesia
           denitrificans DSM 20603]
 gi|256685478|gb|ACV08371.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
           20603]
          Length = 544

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL ++ T  TKR A  + + L ER      +H ++    R + +R  R GK DVLV
Sbjct: 271 ARGRGLSVIFT-RTKRNAAKVADELTERGFAAGALHGDLGQGAREQALRAFRNGKVDVLV 329

Query: 638 GINLLREGLDI 648
             ++   G+D+
Sbjct: 330 ATDVAARGIDV 340


>gi|164424264|ref|XP_958421.2| eIF4A [Neurospora crassa OR74A]
 gi|161789047|sp|Q7RV88|IF4A_NEUCR RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|157070442|gb|EAA29185.2| eIF4A [Neurospora crassa OR74A]
          Length = 397

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH ++   +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 272 TRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQ 331

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 332 VSLVINYDLPANRENYI 348


>gi|86135186|ref|ZP_01053768.1| transcription-repair coupling factor [Polaribacter sp. MED152]
 gi|85822049|gb|EAQ43196.1| transcription-repair coupling factor [Polaribacter sp. MED152]
          Length = 1110

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 13/156 (8%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVL----TKRMAEDLTEYLYERNIRVRYMH 613
           P+E    R   E + D I+    +G ++          K +A  L   +    I + +  
Sbjct: 738 PIESNVIRFSEETIRDAISYEISRGGQVFFIHNRIDNIKEVAGLLQRLVPSAKIGIGHGQ 797

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            E K LE  E++     G+FDVLV   ++  GLD+P    + I +A+  G     + L Q
Sbjct: 798 MEGKKLE--ELMFGFMNGEFDVLVSTTIIESGLDVPNANTIFINNANNFGL----SDLHQ 851

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             GR  R+ N K   Y   IT    +  D+  +R E
Sbjct: 852 MRGRVGRS-NKKAFCYF--ITPPYHMMTDDARKRIE 884



 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 49/248 (19%), Positives = 105/248 (42%), Gaps = 14/248 (5%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q A ++Q++  +   +    +  + GS  +F +++  + + +P +++  +K  AA   ++
Sbjct: 12  QSAKVSQVITALQQEKNQFQISNLAGSSLSFVISESFKKVVKPYLLVFNDKEEAAYYLND 71

Query: 213 FKNFF-PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
            +      N + Y  SY   YQ E      +  +   S +  +I+  +  A         
Sbjct: 72  LEQLLGDKNVLFYPGSYRRPYQIE---DTDNANVLLRSEVLNRINSRKKPA--------- 119

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            IV    +    + + +   +  +++ +G+ +    +   L + ++KR D     G F V
Sbjct: 120 IIVTYPTALFEKVVTKKELEKNTLKITVGEELSLDFVNEVLFEYKFKRVDFVTEPGDFSV 179

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I++F S   D  +R+  FG+DI+ I  F   T      ++ + I  N    T +  
Sbjct: 180 RGGIIDVF-SFSNDEPYRIEFFGDDIDSIRTFDVETQLSKEKLKKVSIMPNVENKTLQEN 238

Query: 392 LNTAMKYI 399
             + +KYI
Sbjct: 239 RQSFLKYI 246


>gi|332847543|ref|XP_003315473.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 [Pan
           troglodytes]
          Length = 578

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+I+  + G  ++LV  ++  EGLDIP C +V      + G L ++ S++Q  GRA
Sbjct: 415 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 465


>gi|320449878|ref|YP_004201974.1| ATP-dependent DNA helicase RecG [Thermus scotoductus SA-01]
 gi|320150047|gb|ADW21425.1| ATP-dependent DNA helicase RecG [Thermus scotoductus SA-01]
          Length = 775

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E+L   L E  +R+  +H  +   E+  ++   R G+FD+LV   ++  G+DIP   L
Sbjct: 583 LYEELKGLLPE--VRMALLHGRMPAREKDSVMEAFRKGEFDLLVSTTVVEVGVDIPRASL 640

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA 690
           + + +A++ G       L Q  GR  R  + S  IL A
Sbjct: 641 IIVENAERFGL----AQLHQLRGRVGRGGLESYAILIA 674



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 6/125 (4%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            AQ  L     +L K+  ++L+ YL+   +RV  +   +   ER  +I  L  G+  V V
Sbjct: 397 GAQGALMAPTEILAKQHYQNLSRYLFPLGVRVELLLGSMTPKEREGVIERLLSGEAQVAV 456

Query: 638 GIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           G + L++EG+   + GL  + +  + G L+ +  L     + A+     +++ A  I +S
Sbjct: 457 GTHALIQEGVGFKDLGLAVVDEEHRFGVLQRRALL-----KLAKVPPDVLVMSATPIPRS 511

Query: 697 IQLAI 701
           + L +
Sbjct: 512 LALTL 516


>gi|302382668|ref|YP_003818491.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193296|gb|ADL00868.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 728

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 15/138 (10%)

Query: 573 DEINLAAQQGLR------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +EI LA    LR       L+   T+   + LT  L ER   V  +  E+    R E ++
Sbjct: 237 NEIELAVVNVLRYFEAPGALVFANTRERVKHLTASLRERGFSVVGLSGELTQSARSEALQ 296

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLV--AILDADKEGFL-RSKTSLIQTIGRAARNVN 683
            LR G   V V  ++   GLD+P+ GLV  A +  +K G L RS  +     GRA +   
Sbjct: 297 ALRDGHARVCVATDVAARGLDLPDLGLVIHAEIPVNKAGLLHRSGRT-----GRAGKKGV 351

Query: 684 SKVILYADTITKSIQLAI 701
           S V+L + T  + ++L +
Sbjct: 352 S-VLLVSYTRRRKVELML 368


>gi|241890049|ref|ZP_04777347.1| transcription-repair coupling factor [Gemella haemolysans ATCC
           10379]
 gi|241863671|gb|EER68055.1| transcription-repair coupling factor [Gemella haemolysans ATCC
           10379]
          Length = 1183

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 36/180 (20%), Positives = 83/180 (46%), Gaps = 11/180 (6%)

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           EL   LV   Y+R +   + G F   G  ++IF S L +   R+  F ++++ +  F  +
Sbjct: 142 ELQRKLVNMGYRRVESVDVVGEFSKRGSIVDIF-SPLSEKPIRLDFFDDELDSMRIFDEI 200

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           T + +  +++  IY  S +       +  ++ +  +L  + I+ ++       Q +   +
Sbjct: 201 TQRSLDRIDSAVIYPTSDFFLTSEEKDIVVERVLAKLDDKKIQKDEN-----YQEISTYL 255

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
              +E+   TG    +E++S  +      E   ++ +Y+ +D+++F D  H  + +I G+
Sbjct: 256 KEKVEIYRATGDFSDLESFSNLIY-----ENTYSIADYLNDDTIVFYDNYHKILEKIEGL 310


>gi|241762219|ref|ZP_04760301.1| transcription-repair coupling factor [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373266|gb|EER62885.1| transcription-repair coupling factor [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 1167

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 597 DLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           DL ++L E+   +R++  H ++   E    +      KFDVL+   ++  GLDIP    +
Sbjct: 842 DLEKFLSEQVPEIRFVIAHGQMAATEVENRMSAFYDKKFDVLLSTTIVESGLDIPSANTM 901

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
            +  AD+ G     + L Q  GR  R   SK   YA  +T  +  +I ET  +R
Sbjct: 902 IVYRADRFGL----SQLYQIRGRVGR---SKTRAYA-YLTTPVNHSISETAEKR 947



 Score = 38.1 bits (87), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 21/92 (22%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q+   L  G  +++++L++ L    Y++ +     G + + G  ++++P+ L   A R+ 
Sbjct: 131 QLCQTLAAGVRLDREKLVTLLRAHGYQQSETVSQSGDYAIRGGLVDLWPAGLP-YALRLD 189

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
            FG++IE + +F P T + I  ++   +   S
Sbjct: 190 FFGDEIETLRQFDPTTQRSIAEIDKFNLLPAS 221


>gi|227432482|ref|ZP_03914468.1| ATP-dependent DNA helicase RecG [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351753|gb|EEJ41993.1| ATP-dependent DNA helicase RecG [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 676

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N  +  +H  +   E+  ++ D +  K  VLV   ++  G+D+P   ++ I+DAD+ G  
Sbjct: 496 NDTIGLLHGRLSNDEKKALMADFKRNKIQVLVATTVIEVGVDVPNASIMLIMDADRFGL- 554

Query: 666 RSKTSLIQTIGRAARNV-NSKVILYAD 691
                L Q  GR  R    S  IL AD
Sbjct: 555 ---AQLHQLRGRVGRGTRQSYTILVAD 578


>gi|210135687|ref|YP_002302126.1| ATP-dependent DNA helicase RecG [Helicobacter pylori P12]
 gi|210133655|gb|ACJ08646.1| ATP-dependent DNA helicase RecG [Helicobacter pylori P12]
          Length = 623

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFT-MAKVIE 190
           N+S+ +  F     +  + DQ  AI ++   + S    + L++G  G GKT   +A ++ 
Sbjct: 216 NNSERLKAFIASLPFKLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVL 275

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           A     ++MAP  ILA QLY+E   F P
Sbjct: 276 AYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|126179703|ref|YP_001047668.1| DEAD/DEAH box helicase domain-containing protein [Methanoculleus
           marisnigri JR1]
 gi|125862497|gb|ABN57686.1| DEAD/DEAH box helicase domain protein [Methanoculleus marisnigri
           JR1]
          Length = 527

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +DLT +L  R      +H ++K   R  ++   R G  D+LV  ++   G+D+ +
Sbjct: 253 TKRGVDDLTTHLQARGYFAEGLHGDMKQTLRDRVMAKFRAGSIDILVATDVAARGIDVED 312

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D  ++         I  IGR AR
Sbjct: 313 VDLVINYDVPQD-----IEYYIHRIGRTAR 337


>gi|108563817|ref|YP_628133.1| ATP-dependent DNA helicase RecG [Helicobacter pylori HPAG1]
 gi|107837590|gb|ABF85459.1| DNA recombinase [Helicobacter pylori HPAG1]
          Length = 623

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFT-MAKVIE 190
           N+S+ +  F     +  + DQ  AI ++   + S    + L++G  G GKT   +A ++ 
Sbjct: 216 NNSERLKAFIASLPFKLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVL 275

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           A     ++MAP  ILA QLY+E   F P
Sbjct: 276 AYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|68475061|ref|XP_718416.1| likely translation initiation factor eIF4A subunit [Candida
           albicans SC5314]
 gi|68475598|ref|XP_718147.1| likely translation initiation factor eIF4A subunit [Candida
           albicans SC5314]
 gi|241948159|ref|XP_002416802.1| ATP-dependent RNA helicase eif4A, putative; eukaryotic initiation
           factor 4A, putative [Candida dubliniensis CD36]
 gi|2500523|sp|P87206|IF4A_CANAL RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|2190248|dbj|BAA20371.1| translation initiation factor [Candida albicans]
 gi|46439903|gb|EAK99215.1| likely translation initiation factor eIF4A subunit [Candida
           albicans SC5314]
 gi|46440181|gb|EAK99490.1| likely translation initiation factor eIF4A subunit [Candida
           albicans SC5314]
 gi|223640140|emb|CAX44387.1| ATP-dependent RNA helicase eif4A, putative [Candida dubliniensis
           CD36]
 gi|238879373|gb|EEQ43011.1| eukaryotic initiation factor 4A [Candida albicans WO-1]
          Length = 397

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD I++      + ++   T+   E LT  L E++  V  +H+++   ER  I+++ R
Sbjct: 255 DLYDSISVT-----QAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   +L+  +LL  G+D+ +  LV   D  A+KE ++
Sbjct: 310 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 347


>gi|67613960|ref|XP_667337.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           hominis TU502]
 gi|126643927|ref|XP_001388148.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           parvum Iowa II]
 gi|10720033|sp|O02494|IF4A_CRYPV RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
 gi|2150025|gb|AAB58726.1| translation initiation factor [Cryptosporidium parvum]
 gi|2155304|gb|AAB58799.1| translation initiation factor [Cryptosporidium parvum]
 gi|54658467|gb|EAL37111.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           hominis]
 gi|126117225|gb|EAZ51325.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           parvum Iowa II]
 gi|323508859|dbj|BAJ77322.1| cgd1_880 [Cryptosporidium parvum]
 gi|323510549|dbj|BAJ78168.1| cgd1_880 [Cryptosporidium parvum]
          Length = 405

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ + ER+     MH ++   +R  I+R  R G   VL+  +LL  G+D+ +
Sbjct: 279 TRRRVDQLTKQMRERDFTCSSMHGDMDQKDREVIMRQFRSGSSRVLITTDLLARGIDVQQ 338

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        S  + I  IGR+ R
Sbjct: 339 VSLVINYD-----LPVSPETYIHRIGRSGR 363


>gi|325568403|ref|ZP_08144770.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
           12755]
 gi|325158172|gb|EGC70325.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
           12755]
          Length = 508

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  +   +H ++   +R+ ++R  + G+ D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|322708815|gb|EFZ00392.1| ATP-dependent DNA helicase mph1 [Metarhizium anisopliae ARSEF 23]
          Length = 1077

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  ++I+ I   R G+F+VLV  ++  EGLDI +  L+   D+       S   ++Q +
Sbjct: 569 MKQAQQIQTIEKFRKGEFNVLVATSIGEEGLDIGQVDLIVCYDSSA-----SPIRMLQRM 623

Query: 676 GRAARNVNSKVIL 688
           GR  R     ++L
Sbjct: 624 GRTGRKRAGNIVL 636


>gi|315658501|ref|ZP_07911373.1| DNA replication factor Y [Staphylococcus lugdunensis M23590]
 gi|315496830|gb|EFU85153.1| DNA replication factor Y [Staphylococcus lugdunensis M23590]
          Length = 802

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +++ D   GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 594 KLLSDFEQGKGDILLGTQMIAKGLDYPNITLVGVLNADTMLNLPDFRASERTYQILTQVA 653

Query: 676 GRAARN 681
           GRA R+
Sbjct: 654 GRAGRH 659


>gi|310790877|gb|EFQ26410.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 396

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH ++   +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 271 TRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQ 330

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 331 VSLVINYDLPANRENYI 347


>gi|296420816|ref|XP_002839964.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636172|emb|CAZ84155.1| unnamed protein product [Tuber melanosporum]
          Length = 593

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 7/115 (6%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +YD +  A     R L+ V  KR+A+ L +YLY   +    +H +    ER + I   
Sbjct: 396 EAIYDLLCTAPPA--RTLIFVNHKRVADSLDDYLYNLKLPTTSIHGDRTQREREDAILAF 453

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           R GK  +++   +   GLDI    ++ +++ D    +++    I  IGR AR  N
Sbjct: 454 RSGKCPIMIATAVAARGLDIKN--VMHVINYD---MVQNIDEYIHRIGRTARIGN 503


>gi|289621395|emb|CBI52178.1| unnamed protein product [Sordaria macrospora]
          Length = 372

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH ++   +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 247 TRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQ 306

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 307 VSLVINYDLPANRENYI 323


>gi|240281206|gb|EER44709.1| ATP-dependent RNA helicase DED1 [Ajellomyces capsulatus H143]
 gi|325092298|gb|EGC45608.1| ATP-dependent RNA helicase DED1 [Ajellomyces capsulatus H88]
          Length = 694

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L+++L +  +    +H +    ER   +   R G+  +LV   +   G
Sbjct: 465 LVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTGRCPILVATAVAARG 524

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           LDIP    V   D   E         +  IGR  R  N+ +     + +K+ ++A
Sbjct: 525 LDIPNVTHVINYDLPNE-----IDDYVHRIGRTGRAGNTGISTAFFSRSKNFKIA 574


>gi|148544386|ref|YP_001271756.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri DSM 20016]
 gi|148531420|gb|ABQ83419.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri DSM 20016]
          Length = 678

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H  + T E+ E +R  + G+  VLV   ++  G+D P   ++ I DAD+ G L  
Sbjct: 501 KVGLLHGRMGTEEKDEAMRQFKSGELQVLVATTVIEVGVDNPNATVMVIYDADRFG-LAQ 559

Query: 668 KTSLIQTIGRAARNVNSKVILYADTIT 694
              L   +GR +R   S  +L AD  T
Sbjct: 560 LHQLRGRVGRGSR--QSYCLLIADPKT 584


>gi|148359886|ref|YP_001251093.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
 gi|296107936|ref|YP_003619637.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
           Alcoy]
 gi|148281659|gb|ABQ55747.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
 gi|295649838|gb|ADG25685.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
           Alcoy]
          Length = 589

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E++ E L +  +R   +H ++    R  II   + G  D+LV  ++   
Sbjct: 248 VIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVAAR 307

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAI 701
           GLD+     V   D   D E +       +  IGR  R   S V IL+       +  +I
Sbjct: 308 GLDVERVTHVINYDMPHDNETY-------VHRIGRTGRAGRSGVTILFVTPKESRLISSI 360

Query: 702 DETTRRREKQLEHNKKHNI 720
           +  TR+R ++++    H I
Sbjct: 361 ERHTRQRIEKVQVPNDHMI 379


>gi|78043791|ref|YP_360317.1| primosomal protein N' [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995906|gb|ABB14805.1| primosomal protein N' [Carboxydothermus hydrogenoformans Z-2901]
          Length = 718

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 12/101 (11%)

Query: 591 TKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           T+R+ E+L +    +  RV Y  M S+    + +E I++    + D+++G  +L +G D 
Sbjct: 477 TQRVEEELKKLFPAKIFRVDYDTMRSKNSYDKILEAIKN---KEADIIIGTQMLAKGFDF 533

Query: 649 PECGLVAILDADKEGFL-------RSKTSLIQTIGRAARNV 682
           P+  LV +L+AD+   L       RS   L Q  GRA R +
Sbjct: 534 PDLTLVGVLNADQSLNLPDFRAGERSFNLLTQVAGRAGRGL 574


>gi|59801051|ref|YP_207763.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae FA 1090]
 gi|59717946|gb|AAW89351.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae FA 1090]
          Length = 1234

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 17/199 (8%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ +    ++  A   
Sbjct: 46  ALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ----IKSGAA-- 98

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
                D + V   + +  +  V   +     LK G +++   L + LV   Y      + 
Sbjct: 99  -----DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVA 153

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
            G F V G  +++FP   E   +R+ +F ++I+ I  F   T + I  V  I++     +
Sbjct: 154 AGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDSIKTFDTDTQRTISPVSEIRLLPAHEF 212

Query: 386 VTPRPTLNTAMKYIKEELK 404
               PT + A K  +   +
Sbjct: 213 ----PTDSEAQKIFRSRFR 227



 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 923  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 979

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 980  -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1015


>gi|326571914|gb|EGE21919.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis BC8]
          Length = 698

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 9/96 (9%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL++ L   +IR   +H ++K  ++  +++  + G  D+L+   ++  G+D+P   L+ 
Sbjct: 513 EDLSDRL---DIRTGLIHGKMKAADKQAVMQAFKAGDIDLLIATTVIEVGVDVPNASLMV 569

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILY 689
           I +A++ G     + L Q  GR  R       V+LY
Sbjct: 570 IENAERLGL----SQLHQLRGRVGRGSAKSFCVLLY 601


>gi|320546379|ref|ZP_08040695.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
 gi|320448989|gb|EFW89716.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
          Length = 530

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD +    D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|306830918|ref|ZP_07464080.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426941|gb|EFM30051.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 526

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD +    D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|289751901|ref|ZP_06511279.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
           tuberculosis T92]
 gi|289692488|gb|EFD59917.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
           tuberculosis T92]
          Length = 328

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ + + L ER   V  +H ++  L R + ++  R G  DVLV  ++   G+DI
Sbjct: 176 TKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDI 233


>gi|289551006|ref|YP_003471910.1| Helicase PriA essential for oriC/DnaA-independent DNA replication
           [Staphylococcus lugdunensis HKU09-01]
 gi|289180538|gb|ADC87783.1| Helicase PriA essential for oriC/DnaA-independent DNA replication
           [Staphylococcus lugdunensis HKU09-01]
          Length = 802

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +++ D   GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 594 KLLSDFEQGKGDILLGTQMIAKGLDYPNITLVGVLNADTMLNLPDFRASERTYQILTQVA 653

Query: 676 GRAARN 681
           GRA R+
Sbjct: 654 GRAGRH 659


>gi|268601549|ref|ZP_06135716.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID18]
 gi|268585680|gb|EEZ50356.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID18]
          Length = 1241

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 17/199 (8%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ +    ++  A   
Sbjct: 53  ALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ----IKSGAA-- 105

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
                D + V   + +  +  V   +     LK G +++   L + LV   Y      + 
Sbjct: 106 -----DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVA 160

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
            G F V G  +++FP   E   +R+ +F ++I+ I  F   T + I  V  I++     +
Sbjct: 161 AGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDSIKTFDTDTQRTISPVSEIRLLPAHEF 219

Query: 386 VTPRPTLNTAMKYIKEELK 404
               PT + A K  +   +
Sbjct: 220 ----PTDSEAQKIFRSRFR 234



 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 930  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 986

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 987  -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1022


>gi|195131547|ref|XP_002010212.1| GI14822 [Drosophila mojavensis]
 gi|193908662|gb|EDW07529.1| GI14822 [Drosophila mojavensis]
          Length = 963

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I++ V TK   ED+ + +         +H +    ER  +++D R GK ++L+  ++  
Sbjct: 491 KIIIFVETKIKVEDILQIIRNEGYVATSIHGDKSQSERDSVLKDFRNGKSNILIATDVAS 550

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     +  S  + +  IGR  R
Sbjct: 551 RGLDVEDLQYVINYD-----YPNSSENYVHRIGRTGR 582


>gi|114667315|ref|XP_001166993.1| PREDICTED: similar to Likely ortholog of mouse D11lgp2 isoform 3
           [Pan troglodytes]
 gi|114667317|ref|XP_001166930.1| PREDICTED: similar to Likely ortholog of mouse D11lgp2 isoform 2
           [Pan troglodytes]
 gi|114667319|ref|XP_001167022.1| PREDICTED: similar to Likely ortholog of mouse D11lgp2 isoform 4
           [Pan troglodytes]
          Length = 767

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+I+  + G  ++LV  ++  EGLDIP C +V      + G L ++ S++Q  GRA
Sbjct: 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472


>gi|11992016|gb|AAG42403.1|AF300471_6 Mfd protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 1145

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 597 DLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           DL ++L E+   +R++  H ++   E    +      KFDVL+   ++  GLDIP    +
Sbjct: 820 DLEKFLSEQVPEIRFVIAHGQMAATEVENRMSAFYDKKFDVLLSTTIVESGLDIPSANTM 879

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
            +  AD+ G     + L Q  GR  R   SK   YA  +T  +  +I ET  +R
Sbjct: 880 IVYRADRFGL----SQLYQIRGRVGR---SKTRAYA-YLTTPVNHSISETAEKR 925



 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 20/92 (21%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q+   L  G  +++++L++ L    Y++ +     G + + G  ++++P+ L   A R+ 
Sbjct: 109 QLCQTLAAGVRLDREKLVTLLRAHGYQQSETVSQSGDYAIRGGLVDLWPAGLP-YALRLD 167

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
            FG++IE + +F P T +++  ++   +   S
Sbjct: 168 FFGDEIETLRQFDPTTQRRLAEIDKFNLLPAS 199


>gi|15219634|ref|NP_174785.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|332193685|gb|AEE31806.1| fanconi anemia group M protein [Arabidopsis thaliana]
          Length = 1324

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++   R G F+V+V  ++  EGLDI E  LV   DA+      S   +IQ +GR  R  N
Sbjct: 519 VLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANV-----SPLRMIQRMGRTGRKNN 573

Query: 684 SKVILYADTITKSIQLAIDETTRRREK 710
            ++        + ++ +I +   R +K
Sbjct: 574 GRIPHVYKPEVQHVEFSIKQFVPRGKK 600


>gi|325282867|ref|YP_004255408.1| transcription factor CarD [Deinococcus proteolyticus MRP]
 gi|324314676|gb|ADY25791.1| transcription factor CarD [Deinococcus proteolyticus MRP]
          Length = 1054

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 10/112 (8%)

Query: 593 RMAEDLTEYLYERNI----RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           R+A      LY R++    R+   H  +   E  EI++    G FDVL+   ++  GLDI
Sbjct: 737 RIASIGARSLYLRSLVPEARIGVAHGRMSEEELEEIMKGFEEGAFDVLLSTTIVETGLDI 796

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQ 698
           PE   + I  AD+ G       L Q  GR  R   +    + Y   +T++ Q
Sbjct: 797 PEANTILIERADRLGL----AQLYQLRGRVGRREQTAYAYLFYPPRMTENAQ 844


>gi|323338339|gb|EGA79567.1| Fal1p [Saccharomyces cerevisiae Vin13]
          Length = 282

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + L++ L + N  V  MH ++K  ER +++ D R
Sbjct: 141 DIYDSLTIT-----QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFR 195

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV  ++ D    +    + I  IGR+ R
Sbjct: 196 TGHSRVLISTDVWARGIDVQQVSLV--INYDLPEIIE---NYIHRIGRSGR 241


>gi|291242437|ref|XP_002741112.1| PREDICTED: eukaryotic translation initiation factor 4A-like
           [Saccoglossus kowalevskii]
          Length = 398

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 312 SGASRVLITTDVWARGIDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 357


>gi|242047398|ref|XP_002461445.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
 gi|241924822|gb|EER97966.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
          Length = 602

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 8/121 (6%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            G + ++   TKR A+ L  Y+  R+   + +H ++   +R   +   R G+F++LV  +
Sbjct: 329 NGGKCIVFTQTKRDADRLA-YVMGRSYPCQALHGDISQNQRERTLSGFRDGRFNILVATD 387

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSIQ 698
           +   GLDIP   LV   +      L      +   GR AR     S +++Y    T++++
Sbjct: 388 VAARGLDIPNVDLVVHYEIPNTSEL-----FVHRSGRTARAGKKGSAILIYTYEQTRAVR 442

Query: 699 L 699
           +
Sbjct: 443 V 443


>gi|227544370|ref|ZP_03974419.1| DNA helicase RecG [Lactobacillus reuteri CF48-3A]
 gi|300909769|ref|ZP_07127230.1| DNA helicase RecG [Lactobacillus reuteri SD2112]
 gi|227185633|gb|EEI65704.1| DNA helicase RecG [Lactobacillus reuteri CF48-3A]
 gi|300893634|gb|EFK86993.1| DNA helicase RecG [Lactobacillus reuteri SD2112]
          Length = 686

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H  + T E+ E +R  + G+  VLV   ++  G+D P   ++ I DAD+ G L  
Sbjct: 509 KVGLLHGRMGTEEKDEAMRQFKSGELQVLVATTVIEVGVDNPNATVMVIYDADRFG-LAQ 567

Query: 668 KTSLIQTIGRAARNVNSKVILYADTIT 694
              L   +GR +R   S  +L AD  T
Sbjct: 568 LHQLRGRVGRGSR--QSYCLLIADPKT 592


>gi|224477631|ref|YP_002635237.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222422238|emb|CAL29052.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 956

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 9/135 (6%)

Query: 555 VDPPVEIR--SARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVR 610
           VD   ++R  ++  +V+ + D  +     G  L+ L+ V  K  A +L E L    I   
Sbjct: 420 VDDNSQLRYLTSEERVKYILDRTDYYGYSGDTLKGLIFVSRKNEAVELAEKLTNHGIATV 479

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +        R E+I+ L+ G  + ++ ++L  EG+DIPE   V +L   +   +     
Sbjct: 480 ALTGSDSQQRRNEVIQQLKDGDINYIITVDLFNEGIDIPEINQVVMLRGTQSSII----- 534

Query: 671 LIQTIGRAARNVNSK 685
            +Q +GR  R   +K
Sbjct: 535 FVQQLGRGLRKSANK 549


>gi|187736504|ref|YP_001878616.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426556|gb|ACD05835.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 400

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 19/153 (12%)

Query: 558 PVEIRSARTQVE------------DVYDEINLAAQQGL---RILLTVLTKRMAEDLTEYL 602
           P E+  AR +V             D  DE+ LA  +G     +++   T++ A+ +   L
Sbjct: 199 PAEVTIARREVAATISHAFYPVALDQRDELLLALLKGTDFRSVMIFTRTRKEADAVCGML 258

Query: 603 YERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
                R  V  MHS++   ER+E ++  + GK+D+LV  ++   G+DI   G+  +++  
Sbjct: 259 KHHGYRGEVAVMHSDIPQKERMEALKGFKSGKYDILVATDVAARGIDI--SGVTHVINYR 316

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
                      I   GRA  + ++  I+ AD +
Sbjct: 317 VPENAEDYVHRIGRTGRAEASGDAFTIMTADEL 349


>gi|164658197|ref|XP_001730224.1| hypothetical protein MGL_2606 [Malassezia globosa CBS 7966]
 gi|159104119|gb|EDP43010.1| hypothetical protein MGL_2606 [Malassezia globosa CBS 7966]
          Length = 653

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 13/127 (10%)

Query: 559 VEIRSARTQVEDVYDEINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           VE R  ++ + DV     LAA    GL  L+ V TKRMA+ L+++L   NI    +H + 
Sbjct: 421 VEDRDKQSMLLDV-----LAAMPTSGL-TLIFVETKRMADMLSDFLIYSNIAATSIHGDR 474

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
              ER   +   R G+  +LV   +   GLDIP    V   D   +         +  IG
Sbjct: 475 TQREREYALDLFRSGRTPILVATAVAARGLDIPNVTHVVNYDLPSD-----IDDYVHRIG 529

Query: 677 RAARNVN 683
           R  R  N
Sbjct: 530 RTGRAGN 536


>gi|149636857|ref|XP_001510982.1| PREDICTED: similar to Dicer protein [Ornithorhynchus anatinus]
          Length = 1921

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 8/109 (7%)

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           EV+  ++ E++R  R  + ++L+  +++ EG+DIP+C LV   D   E       S +Q+
Sbjct: 495 EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE-----YRSYVQS 549

Query: 675 IGRAARNVNSKVILYADTITKSIQLAID-ETTRRREKQLEHNKKHNINP 722
            GR AR   S  I+ AD+  K +    D +T +  EK L +    +++P
Sbjct: 550 KGR-ARAPISNYIMLADS-DKIVTFEEDLKTYKAIEKILRNKCSKSVDP 596


>gi|229542534|ref|ZP_04431594.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
 gi|229326954|gb|EEN92629.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
          Length = 475

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R      +H ++   +R+ ++R  + GK DVLV  ++   GLDI  
Sbjct: 249 TKRRVDELANALNLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 307 SGVTHVYNYD---IPQDPESYVHRIGRTGR 333


>gi|73965191|ref|XP_861211.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           isoform 3 [Canis familiaris]
          Length = 533

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 338 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 397

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           GLDIP    V   D  ++  + + T  I   GRA 
Sbjct: 398 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAG 430


>gi|54295187|ref|YP_127602.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
 gi|53755019|emb|CAH16507.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
          Length = 589

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E++ E L +  +R   +H ++    R  II   + G  D+LV  ++   
Sbjct: 248 VIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVAAR 307

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAI 701
           GLD+     V   D   D E +       +  IGR  R   S V IL+       +  +I
Sbjct: 308 GLDVERVTHVINYDMPHDNETY-------VHRIGRTGRAGRSGVTILFVTPKESRLISSI 360

Query: 702 DETTRRREKQLEHNKKHNI 720
           +  TR+R ++++    H I
Sbjct: 361 ERHTRQRIEKVQVPNDHMI 379


>gi|54298236|ref|YP_124605.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
 gi|53752021|emb|CAH13447.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
          Length = 589

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E++ E L +  +R   +H ++    R  II   + G  D+LV  ++   
Sbjct: 248 VIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVAAR 307

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAI 701
           GLD+     V   D   D E +       +  IGR  R   S V IL+       +  +I
Sbjct: 308 GLDVERVTHVINYDMPHDNETY-------VHRIGRTGRAGRSGVTILFVTPKESRLISSI 360

Query: 702 DETTRRREKQLEHNKKHNI 720
           +  TR+R ++++    H I
Sbjct: 361 ERHTRQRIEKVQVPNDHMI 379


>gi|320352705|ref|YP_004194044.1| transcription-repair coupling factor [Desulfobulbus propionicus DSM
           2032]
 gi|320121207|gb|ADW16753.1| transcription-repair coupling factor [Desulfobulbus propionicus DSM
           2032]
          Length = 1177

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 46/227 (20%), Positives = 96/227 (42%), Gaps = 29/227 (12%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY-YDY 231
           ++G+ G+     +A+ +E +Q     + P       L  +   FF +  V  + S+    
Sbjct: 17  IVGLHGASTALLLARAVETLQHTVCCILPADEQLEPLAQDIA-FFSNVRVLLYPSFEIPP 75

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN--DCIVVSSVSCIY----GIG 285
           Y P +  P T               R+   AT  LL  +   CIV++S   +        
Sbjct: 76  YTPLSPDPAT------------VCGRL---ATLYLLREDLSPCIVLTSAEAVLRRVLPAA 120

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            + ++ ++++    G+  +++ L+ SL+   Y++ D+    G   + G  ++++P  L+ 
Sbjct: 121 VLNAHCELVM---TGEETDREALIGSLIAAGYQQCDMVRQEGDLALRGGIVDVYPPTLDP 177

Query: 346 VA---WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
            A    R+  FG+ +E I  F PL+ +  + +    +   S  + PR
Sbjct: 178 AANGPLRLDFFGDTVESIRLFDPLSQRSRQELREAILLPASDLLFPR 224


>gi|315282812|ref|ZP_07871135.1| ATP-dependent DNA helicase RecG [Listeria marthii FSL S4-120]
 gi|313613541|gb|EFR87362.1| ATP-dependent DNA helicase RecG [Listeria marthii FSL S4-120]
          Length = 682

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 507 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 562

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  + S  IL AD  T+
Sbjct: 563 HQLRGRVGRGADQSYCILIADPKTE 587


>gi|298713116|emb|CBJ33475.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 479

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           ++++YD + +        ++   TKR A+ + E L  +      +H  +  ++R   +  
Sbjct: 301 IQELYDVLEMGQS-----IIFCRTKREADVINERLQAQGFTCSVLHGSLDGVDRDATMEQ 355

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            RLG   VL+  N+L  G+D+P   LV   D    G+
Sbjct: 356 FRLGHNKVLLTTNVLSRGVDVPAVSLVVNYDMPTMGY 392


>gi|268679487|ref|YP_003303918.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617518|gb|ACZ11883.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 614

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 11/147 (7%)

Query: 79  QSQSSISMSEKQTREIS---EQTMTPSVQALARLIQSDNPL--LKNGKIWTPHRSWSINN 133
           +++S +S+     +E+S   +Q   P +Q   +  +  N L  L   K+  P    S   
Sbjct: 160 EAKSLLSLHFPTPQEVSAFEKQGYPPEIQKCLKFTEIYNYLKKLSTKKVTFP----SCAK 215

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFT-MAKVIEA 191
            + D T F     +  + DQ   I ++ +        + +++G  G GKT   ++ V+ A
Sbjct: 216 LAGDETAFIASLPFTLTQDQQKVIGEIKRDFLGENATKRVVMGDVGCGKTMVILSSVMMA 275

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFP 218
             + +++MAP  +LA QL+ E + F P
Sbjct: 276 YPKKSVLMAPTTVLARQLFEEARKFLP 302


>gi|222144592|gb|ACM46113.1| DDX3/PL10 DEAD-box RNA helicase [Schmidtea polychroa]
          Length = 458

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 11/111 (9%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           IL+ V TKR A+ L  +L+    RV  +H +    +R   ++  R G+  +LV   +   
Sbjct: 214 ILVFVETKRGADSLEGFLHGEGFRVASIHGDRSQSDRELALQCFRDGRTPILVATAVAAR 273

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYAD 691
           GLDIP    V   D   D E +       +  IGR  R  N+   +  Y D
Sbjct: 274 GLDIPNVKFVINYDLPTDIEEY-------VHRIGRTGRVGNLGEAISFYTD 317


>gi|154684961|ref|YP_001420122.1| YdbR [Bacillus amyloliquefaciens FZB42]
 gi|154350812|gb|ABS72891.1| YdbR [Bacillus amyloliquefaciens FZB42]
          Length = 511

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L  R      +H ++   +R+  +R  + G  +VLV  ++   GLDI  
Sbjct: 267 TKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDI-- 324

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   + + + +     KS+  AI++TT+R+
Sbjct: 325 SGVTHVYNFD---VPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRK 380


>gi|115384944|ref|XP_001209019.1| eukaryotic initiation factor 4A [Aspergillus terreus NIH2624]
 gi|114196711|gb|EAU38411.1| eukaryotic initiation factor 4A [Aspergillus terreus NIH2624]
          Length = 419

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 294 TRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDIIMKEFRSGSSRVLIATDLLARGIDVQQ 353

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 354 VSLVINYDLPANRENYI 370


>gi|148231712|ref|NP_001085915.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Xenopus laevis]
 gi|49256146|gb|AAH73528.1| MGC82787 protein [Xenopus laevis]
          Length = 682

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+ E I   R G+ ++L+  ++  EGLDIP+C +V      + G + ++ S++Q  GRA
Sbjct: 422 EQRETIEMFRKGQLNLLISTSVAEEGLDIPQCNIVV-----RYGLMTNEISMVQARGRA 475


>gi|326469786|gb|EGD93795.1| DEAD/DEAH box helicase [Trichophyton tonsurans CBS 112818]
          Length = 654

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLV 654
           DLT    E  +  RY+  +     R++ +   R  +F VLV   L  EG DIP  +C L+
Sbjct: 309 DLTAKFREIGVDARYITGQTPKDVRVKELEAFRNYEFPVLVNCGLFTEGTDIPNIDCVLL 368

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR 680
           A          RSK  LIQ IGR  R
Sbjct: 369 ARP-------TRSKNLLIQMIGRGLR 387


>gi|325977801|ref|YP_004287517.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325177729|emb|CBZ47773.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 526

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD +    D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|313233924|emb|CBY10092.1| unnamed protein product [Oikopleura dioica]
          Length = 611

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 10/126 (7%)

Query: 570 DVYDEINL------AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           D  D+IN       A  Q    ++   TK+ A+ L  YLY+R  R   +H +    ER  
Sbjct: 382 DENDKINFLTDLLTATDQNTCFVVFTETKKGADYLDNYLYDRGFRSTCIHGDRNQREREG 441

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAA 679
            ++  R     VLV   +   GLDIP    V   D  +D + ++    +T  +  IG A 
Sbjct: 442 ALKSFREAVTPVLVATAVAARGLDIPNVRHVINFDLPSDIDEYVHRIGRTGRVGNIGLAT 501

Query: 680 RNVNSK 685
              N K
Sbjct: 502 SFFNDK 507


>gi|302307011|ref|NP_983480.2| ACR078Wp [Ashbya gossypii ATCC 10895]
 gi|299788794|gb|AAS51304.2| ACR078Wp [Ashbya gossypii ATCC 10895]
          Length = 466

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 39/73 (53%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L     +V  +H ++++ +R  +I D R G+  VL+  N+L  G
Sbjct: 319 IIFVQTKQTANMLYTELKREGHQVSILHGDLQSADRDRLIGDFREGRSKVLITTNVLARG 378

Query: 646 LDIPECGLVAILD 658
           +DIP   +V   D
Sbjct: 379 IDIPTVSMVVNYD 391


>gi|290893059|ref|ZP_06556048.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J2-071]
 gi|290557419|gb|EFD90944.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J2-071]
          Length = 682

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 507 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 562

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  + S  IL AD  T+
Sbjct: 563 HQLRGRVGRGADQSYCILIADPKTE 587


>gi|159125027|gb|EDP50144.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus fumigatus
           A1163]
          Length = 674

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L  +      +H +    ER   +   R G+  +LV   +   G
Sbjct: 454 LIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARG 513

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 514 LDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 549


>gi|157151166|ref|YP_001449924.1| competence ComFA-like protein [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075960|gb|ABV10643.1| competence ComFA-like protein [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 433

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 6/89 (6%)

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T  R+EI++D R  K  +L+   +L  G+  P C  V +L+A+   F RS  +L+Q  GR
Sbjct: 338 TENRLEIVQDFRDKKISILITTTILERGVTFP-CVDVIVLEANHRLFTRS--ALVQIGGR 394

Query: 678 AARNV---NSKVILYADTITKSIQLAIDE 703
             R++      ++ + D     I+ AI+E
Sbjct: 395 VGRSMERPTGDLLFFHDGTNIQIEKAINE 423


>gi|143456572|sp|Q0D8N0|RH53_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 53
 gi|218199081|gb|EEC81508.1| hypothetical protein OsI_24871 [Oryza sativa Indica Group]
 gi|222636421|gb|EEE66553.1| hypothetical protein OsJ_23067 [Oryza sativa Japonica Group]
          Length = 602

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 8/121 (6%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            G + ++   TKR A+ L  Y   R+   + +H ++   +R   +   R G+F++LV  +
Sbjct: 327 NGGKCIVFTQTKREADRLA-YAMGRSYACQALHGDISQNQRERTLSGFRDGRFNILVATD 385

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSIQ 698
           +   GLDIP   LV   +      L      +   GR AR     S +++Y +   ++++
Sbjct: 386 VAARGLDIPNVDLVIHYELPNTSEL-----FVHRSGRTARAGKKGSAILIYTNDQARAVR 440

Query: 699 L 699
           +
Sbjct: 441 I 441


>gi|40643202|emb|CAE14775.1| Helicase C-terminal domain [Leptospira phage LE1]
          Length = 501

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G R ++  ++ RMA  L   L E  I+ + + +E    ER   I   R G+   L+   L
Sbjct: 246 GRRTIVFTVSVRMAVMLEAILKENGIKAKALSAESSVEERRYAISQFRRGEITHLLNCAL 305

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             EG D PE   V I    K     S+T   Q +GR  R
Sbjct: 306 FTEGFDCPEIEAVVIACPTK-----SRTKYSQMVGRGTR 339


>gi|87240993|gb|ABD32851.1| Helicase, C-terminal; Zinc finger, CCHC-type; GUCT [Medicago
           truncatula]
          Length = 753

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           S RT + D+   I + A+ G  I+ T  TKR A++++  L   +I    +H ++   +R 
Sbjct: 340 SKRTILSDL---ITVYAKGGKTIVFT-QTKRDADEVSLALTN-SITSEALHGDISQHQRE 394

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
             +   R GKF VLV  ++   GLDIP   L+
Sbjct: 395 RTLNGFRQGKFTVLVATDVASRGLDIPNVDLI 426


>gi|50547377|ref|XP_501158.1| YALI0B20922p [Yarrowia lipolytica]
 gi|74660087|sp|Q6CDV4|IF4A_YARLI RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|49647024|emb|CAG83411.1| YALI0B20922p [Yarrowia lipolytica]
          Length = 395

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y+ IN++     + ++   T+R  + LT+ L E +  V  MH E +  +R  I++  R
Sbjct: 254 DLYETINVS-----QAVIFCNTRRKVDYLTQALTEADFTVSSMHGETEQSQRDVIMKAFR 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   +L+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 309 TGSSRILITTDLLARGIDVQQVSLVINFDLPSNRENYI 346


>gi|322700444|gb|EFY92199.1| Dicer-like protein 2 [Metarhizium acridum CQMa 102]
          Length = 1441

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 6/78 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++  ++  R GK ++L+  ++L EG+D+P C +V   D        +  S +Q  GR A
Sbjct: 496 DQMAALQSFRSGKINILIATSVLEEGIDVPACNMVICFDHPA-----TPKSFVQRRGR-A 549

Query: 680 RNVNSKVILYADTITKSI 697
           R   SK+IL ++  + ++
Sbjct: 550 RMKESKLILLSEYSSSAV 567


>gi|313122802|ref|YP_004033061.1| DNA or RNA helicase of superfamily ii [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312279365|gb|ADQ60084.1| DNA or RNA helicase of superfamily II [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 921

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 7/120 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRM--AEDLTEYLYERNIRVRYMHSEVKTLE 620
            A+ +V  +  E++     G R    V   R   A  L E   ++    + + ++     
Sbjct: 393 GAKKRVSYLLKELDYYGYSGPRPCGLVFCSRQEEARQLAEAFTQQGQPAQALTNQDSPAV 452

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R + ++DL  G+   LV ++L  EG+DIP    + +L A +     S T  IQ +GR  R
Sbjct: 453 RRQAVKDLESGRLHYLVTVDLFNEGVDIPALNQIVMLRATQ-----SATVFIQQLGRGLR 507


>gi|288904866|ref|YP_003430088.1| ATP-dependent RNA helicase [Streptococcus gallolyticus UCN34]
 gi|288731592|emb|CBI13147.1| putative ATP-dependent RNA helicase [Streptococcus gallolyticus
           UCN34]
          Length = 526

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R  R   +H ++   +R+ ++RD +    D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|193215401|ref|YP_001996600.1| primosomal protein N' [Chloroherpeton thalassium ATCC 35110]
 gi|193088878|gb|ACF14153.1| primosomal protein N' [Chloroherpeton thalassium ATCC 35110]
          Length = 829

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           EI++D + GK  +L+G  ++ +GLD P   LV +++AD    L       R    L+Q  
Sbjct: 618 EILKDFQTGKTKILLGTQMVAKGLDFPNVTLVGVINADIGLTLPDFRASERLFALLLQVA 677

Query: 676 GRAARN 681
           GRA R 
Sbjct: 678 GRAGRG 683


>gi|184153750|ref|YP_001842091.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri JCM 1112]
 gi|227363189|ref|ZP_03847323.1| DNA helicase RecG [Lactobacillus reuteri MM2-3]
 gi|325682706|ref|ZP_08162222.1| DNA helicase RecG [Lactobacillus reuteri MM4-1A]
 gi|183225094|dbj|BAG25611.1| ATP-dependent DNA helicase RecG [Lactobacillus reuteri JCM 1112]
 gi|227071795|gb|EEI10084.1| DNA helicase RecG [Lactobacillus reuteri MM2-3]
 gi|324977056|gb|EGC14007.1| DNA helicase RecG [Lactobacillus reuteri MM4-1A]
          Length = 690

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H  + T E+ E +R  + G+  VLV   ++  G+D P   ++ I DAD+ G L  
Sbjct: 513 KVGLLHGRMGTEEKDEAMRQFKSGELQVLVATTVIEVGVDNPNATVMVIYDADRFG-LAQ 571

Query: 668 KTSLIQTIGRAARNVNSKVILYADTIT 694
              L   +GR +R   S  +L AD  T
Sbjct: 572 LHQLRGRVGRGSR--QSYCLLIADPKT 596


>gi|110430646|gb|ABG73436.1| DEAD/DEAH box helicase family protein [Oryza brachyantha]
          Length = 688

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 12/127 (9%)

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R+AR QV  + D I   ++ G  I+ T  TK  A +L+  +       R +H +V   +R
Sbjct: 342 RAARAQV--IPDIIRCYSRGGRTIIFTE-TKESASELSGLIAGS----RALHGDVAQAQR 394

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             I+   R GKF VLV  N+   GLDI +  L+   +       R   + I   GR  R 
Sbjct: 395 EVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPP-----RDVEAYIHRSGRTGRA 449

Query: 682 VNSKVIL 688
            N+ V +
Sbjct: 450 GNTGVAV 456


>gi|145233847|ref|XP_001400296.1| ATP-dependent RNA helicase eIF4A [Aspergillus niger CBS 513.88]
 gi|134034144|sp|A2QEN5|IF4A_ASPNC RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|134057232|emb|CAK44496.1| unnamed protein product [Aspergillus niger]
          Length = 398

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 273 TRRKVDWLTDKLTARDFTVSAMHGDMEQGQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 332

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 333 VSLVINYDLPANRENYI 349


>gi|37520933|ref|NP_924310.1| helicase protein [Gloeobacter violaceus PCC 7421]
 gi|35211928|dbj|BAC89305.1| glr1364 [Gloeobacter violaceus PCC 7421]
          Length = 468

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 22/159 (13%)

Query: 575 INLAAQQGLRILLTVLTKRMAE--------DLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           I +  +  LR++  +L +   E        + T Y   R+  +  +  +    ER  I+ 
Sbjct: 316 IAMGTESKLRVMADLLVRHYPEPALIFTYDNATVYRIARDYLIPAITHQTPVKERHAILA 375

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVN 683
             R G++  +V   +L EG+D+PE  +  +L         S    IQ +G   R  R+ N
Sbjct: 376 AFRTGEYRAVVASQVLNEGVDVPEASVAILLSGTA-----SAREYIQRLGRILRKGRDPN 430

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
              +LY      +++   + T+ RR     H + H+  P
Sbjct: 431 KHAVLYEVYSEDTLE---ERTSARRHA---HTRPHHQPP 463


>gi|312126278|ref|YP_003991152.1| type iii restriction protein res subunit [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776297|gb|ADQ05783.1| type III restriction protein res subunit [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 885

 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK---TLERIEIIRDLRLGKFDVLVGIN 640
           R L    ++  AE + EY  +  ++   ++S  +      R + I  LR G+ +V+  ++
Sbjct: 501 RTLAFCTSRNHAEFMAEYFNQNGVKSCAVYSGEQGKNAAFRGQAIEKLRKGEINVIFTVD 560

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +  EG+DIPE  +V  L   +     S T  +Q +GR  R    K  L
Sbjct: 561 MFNEGVDIPEIDMVMFLRPTE-----SPTVFLQQLGRGLRKAKDKYYL 603


>gi|255721753|ref|XP_002545811.1| hypothetical protein CTRG_00592 [Candida tropicalis MYA-3404]
 gi|240136300|gb|EER35853.1| hypothetical protein CTRG_00592 [Candida tropicalis MYA-3404]
          Length = 440

 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 9/88 (10%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE L   L + + RV  +HSE+   ER   +   + G   +L+  ++   GLDIP   LV
Sbjct: 266 AEVLRRTLRKLDFRVASLHSEMPQAERTNSLHRFKAGAARILIATDVASRGLDIPTVELV 325

Query: 655 AILD--ADKEGFLRSKTSLIQTIGRAAR 680
              D  AD + F       I  +GR AR
Sbjct: 326 VNFDIPADPDDF-------IHRVGRTAR 346


>gi|212692918|ref|ZP_03301046.1| hypothetical protein BACDOR_02418 [Bacteroides dorei DSM 17855]
 gi|237708308|ref|ZP_04538789.1| primosomal protein N [Bacteroides sp. 9_1_42FAA]
 gi|237723519|ref|ZP_04554000.1| primosomal protein N [Bacteroides sp. D4]
 gi|265757058|ref|ZP_06090920.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212664540|gb|EEB25112.1| hypothetical protein BACDOR_02418 [Bacteroides dorei DSM 17855]
 gi|229438070|gb|EEO48147.1| primosomal protein N [Bacteroides dorei 5_1_36/D4]
 gi|229457529|gb|EEO63250.1| primosomal protein N [Bacteroides sp. 9_1_42FAA]
 gi|263233557|gb|EEZ19186.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 820

 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II +  LGK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  
Sbjct: 614 KIITNFELGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNFPDFRSYERAFQLMAQVA 673

Query: 676 GRAAR-NVNSKVIL 688
           GRA R N    VIL
Sbjct: 674 GRAGRKNKQGLVIL 687


>gi|167035344|ref|YP_001670575.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166861832|gb|ABZ00240.1| DEAD/H associated domain protein [Pseudomonas putida GB-1]
          Length = 1429

 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 22/152 (14%)

Query: 550 RPTGLVD-------------PPVEIRSA-RTQVED-VYDEINLAAQQGLRILLTVLTKRM 594
           RP  +VD             PPV + +   T V   VYD +   A++    L+ V T+R+
Sbjct: 230 RPCAIVDVGHARKRDLAIEVPPVPLGAVMATDVWGLVYDRLATLAREHRTTLVFVNTRRL 289

Query: 595 AEDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           AE +T +L +R  +  V   H  +    R++  + L+ G+  VLV    L  G+DI +  
Sbjct: 290 AERITRHLSDRLGKEAVAAHHGSLSKELRLDAEQRLKRGQLQVLVATASLELGIDIGDVD 349

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           LV  + +       S  + +Q +GRA   V+ 
Sbjct: 350 LVCQIASPG-----SIAAFLQRVGRAGHQVDG 376


>gi|164658139|ref|XP_001730195.1| hypothetical protein MGL_2577 [Malassezia globosa CBS 7966]
 gi|159104090|gb|EDP42981.1| hypothetical protein MGL_2577 [Malassezia globosa CBS 7966]
          Length = 480

 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 12/130 (9%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A+ + + +     RV  +H ++ T  R   I + R GK  VL+  N++  G+DI +  LV
Sbjct: 338 ADKIAQRMTAEGHRVDSLHGKLDTAARDRTIDEFRSGKCKVLIATNVIARGIDIQQVTLV 397

Query: 655 AILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
              D    ++G   ++T L   IGR  R     V         SI    D+T+RR+ + +
Sbjct: 398 INYDMPLTQQGDPDAETYL-HRIGRTGRFGRKGV---------SINFVHDDTSRRQMESI 447

Query: 713 EHNKKHNINP 722
           E     +I P
Sbjct: 448 ERALHCHIVP 457


>gi|145603147|ref|XP_361955.2| hypothetical protein MGG_04400 [Magnaporthe oryzae 70-15]
 gi|152032534|sp|A4QVP2|IF4A_MAGO7 RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|145011448|gb|EDJ96104.1| hypothetical protein MGG_04400 [Magnaporthe oryzae 70-15]
          Length = 396

 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH ++   +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 271 TRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQ 330

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 331 VSLVINYDLPANRENYI 347


>gi|108798364|ref|YP_638561.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119867461|ref|YP_937413.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           KMS]
 gi|108768783|gb|ABG07505.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119693550|gb|ABL90623.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS]
          Length = 507

 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ + + L ER  +V  +H ++    R + ++  R G+ DVLV  ++   G+DI
Sbjct: 269 TKRTAQKVADELAERGFKVGAVHGDLGQGAREKALKSFRTGEVDVLVATDVAARGIDI 326


>gi|56418761|ref|YP_146079.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
 gi|81675946|sp|Q5L3G9|CSHA_GEOKA RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|56378603|dbj|BAD74511.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
          Length = 467

 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L  R      +H ++   +R+ ++R  + G  ++LV  ++   GLDI  
Sbjct: 249 TKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-AIDETTRRRE 709
            G+  + + D     +   S +  IGR  R   + V +   T  +  QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKM 363

Query: 710 KQLE 713
           ++++
Sbjct: 364 ERMK 367


>gi|116493289|ref|YP_805024.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC
           25745]
 gi|116103439|gb|ABJ68582.1| Superfamily II DNA and RNA helicase [Pediococcus pentosaceus ATCC
           25745]
          Length = 526

 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++++ L  R      +H ++    R+ I+R  R G+ D+LV  ++   GLDI  
Sbjct: 248 TKRRVDEVSKGLVTRGYNAAGIHGDLTQQRRMSILRQFREGQLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|327259080|ref|XP_003214366.1| PREDICTED: endoribonuclease Dicer-like isoform 2 [Anolis
           carolinensis]
          Length = 1915

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           EV+  ++ E++R  R  + ++L+  +++ EG+DIP+C LV   D   E       S +Q+
Sbjct: 485 EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE-----YRSYVQS 539

Query: 675 IGRAARNVNSKVILYADT 692
            GR AR   S  I+ AD+
Sbjct: 540 KGR-ARAPISNYIMLADS 556


>gi|331238187|ref|XP_003331749.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28 [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
 gi|309310739|gb|EFP87330.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28 [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
          Length = 834

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 2/96 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V  K+ A+ L + +         +HS     +R   +  LR G+ D+LV  +L   
Sbjct: 682 IIVFVNQKKTADQLAKDISRAGWSTTTLHSGKNQEQREAALASLRAGESDILVATDLAGR 741

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D+P+ GLV  ++    G + +    I   GRA +
Sbjct: 742 GIDVPDVGLV--VNFQMAGTIEAYVHRIGRTGRAGK 775


>gi|261418549|ref|YP_003252231.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
 gi|297528577|ref|YP_003669852.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
 gi|319765363|ref|YP_004130864.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
 gi|261375006|gb|ACX77749.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
 gi|297251829|gb|ADI25275.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
 gi|317110229|gb|ADU92721.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
          Length = 467

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L  R      +H ++   +R+ ++R  + G  ++LV  ++   GLDI  
Sbjct: 249 TKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-AIDETTRRRE 709
            G+  + + D     +   S +  IGR  R   + V +   T  +  QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKM 363

Query: 710 KQLE 713
           ++++
Sbjct: 364 ERMK 367


>gi|213410166|ref|XP_002175853.1| translation initiation factor eIF4A [Schizosaccharomyces japonicus
           yFS275]
 gi|212003900|gb|EEB09560.1| translation initiation factor eIF4A [Schizosaccharomyces japonicus
           yFS275]
          Length = 392

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE L ER+  V  MH ++   +R  ++ + R G   +L+  +LL  G+D+ +
Sbjct: 267 TRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDILMHEFRTGSSRILITTDLLARGIDVQQ 326

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 327 VSLVINYDLPANRENYI 343


>gi|254389835|ref|ZP_05005059.1| ATP-dependent helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197703546|gb|EDY49358.1| ATP-dependent helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 943

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           +R L   ++ + A  + E     N+    +  E    +R + + DL+ G   ++  ++L 
Sbjct: 460 MRALGFCVSVQHAHYMAEEFRRNNLNAVALSGESSNSDRRKALDDLKSGAVQIIFSVDLF 519

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            EGLDIP+   V +L         S T  +Q +GR  R    K  L
Sbjct: 520 NEGLDIPDVDTVLMLRPTS-----SATIFLQQLGRGLRRSEGKPFL 560


>gi|166031178|ref|ZP_02234007.1| hypothetical protein DORFOR_00864 [Dorea formicigenerans ATCC
           27755]
 gi|166029025|gb|EDR47782.1| hypothetical protein DORFOR_00864 [Dorea formicigenerans ATCC
           27755]
          Length = 1114

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           + V + H ++K  E  +I+ D   G  DVLV   ++  GLDI     + I DAD+ G L 
Sbjct: 800 LNVSFAHGQMKEHELEKIMYDFINGDIDVLVSTTIIETGLDISNVNTMIIHDADRLG-LS 858

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               L   +GR+ R   + ++   D + K I
Sbjct: 859 QLYQLRGRVGRSGRMAYAFLLYRKDKLLKEI 889


>gi|333000436|gb|EGK20018.1| ATP-dependent RNA helicase srmB [Shigella flexneri VA-6]
          Length = 444

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +VL
Sbjct: 243 LKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR AR
Sbjct: 303 VATDVAARGIDIPDVSHVFNFD-----MPRSGDTYLHRIGRTAR 341


>gi|332847541|ref|XP_001166868.2| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 1 [Pan
           troglodytes]
          Length = 661

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+I+  + G  ++LV  ++  EGLDIP C +V      + G L ++ S++Q  GRA
Sbjct: 405 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 455


>gi|327259078|ref|XP_003214365.1| PREDICTED: endoribonuclease Dicer-like isoform 1 [Anolis
           carolinensis]
          Length = 1918

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           EV+  ++ E++R  R  + ++L+  +++ EG+DIP+C LV   D   E       S +Q+
Sbjct: 495 EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE-----YRSYVQS 549

Query: 675 IGRAARNVNSKVILYADT 692
            GR AR   S  I+ AD+
Sbjct: 550 KGR-ARAPISNYIMLADS 566


>gi|312134559|ref|YP_004001897.1| transcription-repair coupling factor [Caldicellulosiruptor
           owensensis OL]
 gi|311774610|gb|ADQ04097.1| transcription-repair coupling factor [Caldicellulosiruptor
           owensensis OL]
          Length = 1141

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 126/314 (40%), Gaps = 27/314 (8%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L  G  ++ + L+  L+K  Y+R      +G F   G  ++I+P        R+  FG
Sbjct: 131 IHLTEGFDIQLENLIEKLLKFGYERVKTVEKKGQFSQKGGIVDIYPVA-SRYPVRIEFFG 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           + I+ I  F   T +    ++++KIY    +       +  +K IKE+ K   ++L+++G
Sbjct: 190 DTIDTIRLFDVETQKSFERIDSVKIYKAIEW-DLEEDFSEGLKCIKEDCKKMKLKLKEDG 248

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           R    + LE+     +E L+          Y ++ +  +           I  + L+FVD
Sbjct: 249 R----KNLEESFREVVEELQLNVERLYPYYYQQFFSVVD-----------IFSECLVFVD 293

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           E       +  + +      + L E GF LP   +          C    + V+    GS
Sbjct: 294 EYSQVYSSLKALEQEKQEMFSDLLEKGFVLPKMAE----------CYFTMSEVLEKLSGS 343

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
             L+    +I E  ++     +   E+ S   Q E + D++     +   I +   ++  
Sbjct: 344 IILQTFVSVIKELELKDIISFNFLRELPSYNGQKEVLIDDLKYYMSKNYTINIFAGSRTS 403

Query: 595 AEDLTEYLYERNIR 608
            EDL + L   +I+
Sbjct: 404 LEDLADALLREDIQ 417


>gi|294775138|ref|ZP_06740665.1| type III restriction enzyme, res subunit [Bacteroides vulgatus
           PC510]
 gi|294451026|gb|EFG19499.1| type III restriction enzyme, res subunit [Bacteroides vulgatus
           PC510]
          Length = 784

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 13/180 (7%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           T +  +Y+ +   A  G + ++  ++   A  +  Y     +    + S    LER E++
Sbjct: 230 TGIRQLYESVRRYAA-GKKGIVYAVSIAHARQIAAYYSLHGVESVAIDSRTPALERKELV 288

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL---IQTIGRAARNV 682
            D R GK  VLV +++  EG D P+   V +         R   SL   +Q +GR  R  
Sbjct: 289 EDFRRGKISVLVNVDIFSEGFDCPDVEFVQL--------ARPTLSLAKYLQQVGRGLRKS 340

Query: 683 NSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           ++K   +  D +       +    R  E   E     N  P +  E     +   L ED+
Sbjct: 341 DNKESCMLIDNVGLHRIFGLPVRDRDWEAMFEGRMAGNAQPWTRMENSGLSVSCSLSEDS 400


>gi|217964036|ref|YP_002349714.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes HCC23]
 gi|217333306|gb|ACK39100.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes HCC23]
          Length = 682

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 507 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 562

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  + S  IL AD  T+
Sbjct: 563 HQLRGRVGRGADQSYCILIADPKTE 587


>gi|153876061|ref|ZP_02003573.1| hypothetical protein BGP_0848 [Beggiatoa sp. PS]
 gi|152067476|gb|EDN66428.1| hypothetical protein BGP_0848 [Beggiatoa sp. PS]
          Length = 66

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 35/47 (74%)

Query: 750 AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           A+ L LS +K    +K L+K+M+  A+NL FEEAA++RDEI++L+ +
Sbjct: 16  AEYLLLSPEKFDKKIKQLQKKMYQHAENLEFEEAAQLRDEIQQLQHN 62


>gi|323359687|ref|YP_004226083.1| RecG-like helicase [Microbacterium testaceum StLB037]
 gi|323276058|dbj|BAJ76203.1| RecG-like helicase [Microbacterium testaceum StLB037]
          Length = 729

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            IRV  +H ++ + E+  +++    G  DVLV   ++  G+D+P    + IL+AD+ G  
Sbjct: 545 GIRVEILHGKMPSDEKDAVMQAFARGDIDVLVATTVIEVGVDVPNASTMVILEADRFGV- 603

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R 
Sbjct: 604 ---SQLHQLRGRVGRG 616


>gi|260576816|ref|ZP_05844800.1| ATP-dependent DNA helicase, RecQ family [Rhodobacter sp. SW2]
 gi|259020959|gb|EEW24271.1| ATP-dependent DNA helicase, RecQ family [Rhodobacter sp. SW2]
          Length = 1415

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 9/129 (6%)

Query: 566 TQVEDVYDEI--NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           T++ D+   I  NL  +     ++   T+   E + E+L  + +   Y H++    E+ E
Sbjct: 469 TKLTDILSAIAENLPLEGASGAVVYCATRSATEKVAEFLKGQGLAADYFHAKRSPEEKRE 528

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +    R+G+  V+   N    G+D P+  LV  +  D  G L    + +Q  GRA R+ +
Sbjct: 529 VQEAFRIGQLRVIAATNAFGMGIDKPDIRLV--VHGDIPGSLE---NYLQEAGRAGRDRD 583

Query: 684 --SKVILYA 690
             S V+L+A
Sbjct: 584 PASCVLLFA 592


>gi|257867061|ref|ZP_05646714.1| helicase [Enterococcus casseliflavus EC30]
 gi|257873396|ref|ZP_05653049.1| helicase [Enterococcus casseliflavus EC10]
 gi|257877139|ref|ZP_05656792.1| helicase [Enterococcus casseliflavus EC20]
 gi|257801117|gb|EEV30047.1| helicase [Enterococcus casseliflavus EC30]
 gi|257807560|gb|EEV36382.1| helicase [Enterococcus casseliflavus EC10]
 gi|257811305|gb|EEV40125.1| helicase [Enterococcus casseliflavus EC20]
          Length = 507

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  +   +H ++   +R+ ++R  + G+ D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|255944863|ref|XP_002563199.1| Pc20g06740 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587934|emb|CAP86003.1| Pc20g06740 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 396

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 271 TRRKVDWLTDKLTARDFTVSAMHGDMEQGQRDVIMKEFRSGSSRVLIATDLLARGIDVQQ 330

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 331 VSLVINYDLPANRENYI 347


>gi|224500042|ref|ZP_03668391.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes Finland
           1988]
 gi|254829194|ref|ZP_05233881.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL N3-165]
 gi|254831587|ref|ZP_05236242.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes 10403S]
 gi|254899492|ref|ZP_05259416.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes J0161]
 gi|254912369|ref|ZP_05262381.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes J2818]
 gi|254936696|ref|ZP_05268393.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes F6900]
 gi|258601604|gb|EEW14929.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL N3-165]
 gi|258609293|gb|EEW21901.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes F6900]
 gi|293590351|gb|EFF98685.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes J2818]
          Length = 682

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 507 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 562

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  + S  IL AD  T+
Sbjct: 563 HQLRGRVGRGADQSYCILIADPKTE 587


>gi|148239816|ref|YP_001225203.1| transcription-repair coupling factor [Synechococcus sp. WH 7803]
 gi|147848355|emb|CAK23906.1| Transcription-repair coupling factor [Synechococcus sp. WH 7803]
          Length = 1180

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 41/210 (19%), Positives = 95/210 (45%), Gaps = 15/210 (7%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           LL G   + +    + +     RP +V+ P    A +  +  +     +A  Y  S    
Sbjct: 30  LLRGAGRAARALVASAMARHQDRPLLVVVPTLEEAGRWTALLELMGWRSAQLYPTSEGSP 89

Query: 232 YQPEAYVPRTDTYIEKESSINE-QIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
           Y+P  + P ++    +   ++E Q++           +  D  +V++  C+   +   + 
Sbjct: 90  YEP--FDPTSEITWGQLQVLSELQVEG----------QSRDLAIVATERCLQPHLPPPQV 137

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
            +     L+ GDS++ + L  SL +  Y+R       GT+   GD +++FP   E +  R
Sbjct: 138 LADRCRTLRKGDSIDLEALAVSLSQLGYERVSTIDQEGTWSRRGDIVDVFPVSSE-LPVR 196

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           +  FG++++++ EF P + + +  ++++++
Sbjct: 197 LEFFGDELDKLREFDPASQRSLDPIDSLRL 226


>gi|116196386|ref|XP_001224005.1| hypothetical protein CHGG_04791 [Chaetomium globosum CBS 148.51]
 gi|88180704|gb|EAQ88172.1| hypothetical protein CHGG_04791 [Chaetomium globosum CBS 148.51]
          Length = 649

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LT+      +  R++  +  T +R E +   + G+F VLV   +  EG DIP    + + 
Sbjct: 294 LTQRFRHYGVDARFVTGDTPTRDRAERLDAFKKGEFPVLVNCGVFTEGTDIPNIDCIVLA 353

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
                   RS+  LIQ IGR  R
Sbjct: 354 RP-----TRSRNLLIQMIGRGMR 371


>gi|320170226|gb|EFW47125.1| ATP-dependent RNA helicase dbp2 [Capsaspora owczarzaki ATCC 30864]
          Length = 562

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++  Q   + ++   TKR  +DLT  +         +H +    ER  ++ + + GK D+
Sbjct: 317 SIVTQPDHKTIIFTETKRGTDDLTRRMRRSGWNAMSIHGDKNQSERDWVLAEFKAGKCDI 376

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           L+  ++   GLD+ +   V   D     F  +    +  IGR AR
Sbjct: 377 LIATDVASRGLDVKDIRFVINYD-----FPNNVEDYVHRIGRTAR 416


>gi|317490115|ref|ZP_07948604.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|316910820|gb|EFV32440.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
          Length = 509

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   TK   ED  E L +   R   +HS+    +R   + + R G+  +LV  ++L 
Sbjct: 245 RVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVATDVLA 304

Query: 644 EGLDIPECGLVAILD 658
            G+D+P+   V   D
Sbjct: 305 RGIDVPDVDHVINFD 319


>gi|296112326|ref|YP_003626264.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis RH4]
 gi|295920020|gb|ADG60371.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis RH4]
 gi|326561837|gb|EGE12172.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 7169]
 gi|326563383|gb|EGE13648.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 12P80B1]
 gi|326568942|gb|EGE19011.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis BC1]
          Length = 698

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 9/96 (9%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL++ L   +IR   +H ++K  ++  +++  + G  D+L+   ++  G+D+P   L+ 
Sbjct: 513 EDLSDRL---DIRTGLIHGKMKAADKQAVMQAFKAGDIDLLIATTVIEVGVDVPNASLMV 569

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILY 689
           I +A++ G     + L Q  GR  R       V+LY
Sbjct: 570 IENAERLGL----SQLHQLRGRVGRGSAKSFCVLLY 601


>gi|289435154|ref|YP_003465026.1| ATP-dependent DNA helicase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171398|emb|CBH27942.1| ATP-dependent DNA helicase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 682

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 507 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 562

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  + S  IL AD  T+
Sbjct: 563 HQLRGRVGRGADQSYCILIADPKTE 587


>gi|258645650|ref|ZP_05733119.1| transcription-repair coupling factor [Dialister invisus DSM 15470]
 gi|260403014|gb|EEW96561.1| transcription-repair coupling factor [Dialister invisus DSM 15470]
          Length = 1135

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 4/109 (3%)

Query: 256 DRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           DRMR  A  SLL+ R   ++ + V     I S     + ++ + +G+ +E++ L+  LVK
Sbjct: 135 DRMRGLA--SLLDGRRSAVIATVVEAAQKIISPSGILENLMTIHMGEVIEREILVGKLVK 192

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
             Y+R D     G F V GD ++IF  + E   +RV  F ++++ I  F
Sbjct: 193 LGYERVDQVERCGHFSVRGDIVDIFAIN-ESHPFRVEFFDDEVDGIRVF 240



 Score = 37.7 bits (86), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            I V Y   + +TLE+I +  D    K+DVL+   ++  G+D P    + + DADK G  
Sbjct: 818 TIAVAYGQMDGRTLEKIMV--DFFEKKYDVLLCTTIIENGVDQPNANTMLVYDADKLGL- 874

Query: 666 RSKTSLIQTIGRAARN 681
              + + Q  GR  R+
Sbjct: 875 ---SQIYQMRGRVGRS 887


>gi|171687533|ref|XP_001908707.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943728|emb|CAP69380.1| unnamed protein product [Podospora anserina S mat+]
          Length = 396

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH ++   +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 271 TRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQ 330

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 331 VSLVINYDLPANRENYI 347


>gi|167518125|ref|XP_001743403.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778502|gb|EDQ92117.1| predicted protein [Monosiga brevicollis MX1]
          Length = 288

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  E LT  + +R+  V  +H E++  ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 163 TRRKVEWLTTAMRDRDFTVSAIHGEMEQAERDVIMREFRSGSSRVLITTDLLARGIDVHQ 222

Query: 651 CGLVAILD 658
             LV   D
Sbjct: 223 VSLVINFD 230


>gi|158341273|ref|YP_001522363.1| primosome assembly protein PriA [Acaryochloris marina MBIC11017]
 gi|158311514|gb|ABW33125.1| primosomal protein N' [Acaryochloris marina MBIC11017]
          Length = 830

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 20/138 (14%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+R+ ++L +   E R IR     +  K   R +++     G+ D++VG  +L +G+D+P
Sbjct: 587 TQRVMQELDKTFPELRVIRFDSDTTRRKGAHR-QLLNQFARGQADLMVGTQMLTKGIDLP 645

Query: 650 ECGLVAILDADK-------EGFLRSKTSLIQTIGRAARNVN-SKVIL--YA--DTITKSI 697
           +  L+ +L AD            R+  +L+Q  GRA R  +  +VIL  YA    + +++
Sbjct: 646 QVQLIGVLAADSLLNIPDFRASERTFQTLLQVAGRAGRGEHPGQVILQTYAPEHPVIQAV 705

Query: 698 Q------LAIDETTRRRE 709
           Q        I+E  +RRE
Sbjct: 706 QQYSMNTFLINELKQRRE 723


>gi|111225403|ref|YP_716197.1| ATP-dependent RNA helicase-like protein [Frankia alni ACN14a]
 gi|111152935|emb|CAJ64683.1| DEAD-box protein family; ATP-dependent RNA helicase-like protein
           [Frankia alni ACN14a]
          Length = 532

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL ++  V T+R A+ + E L +R      +H ++   +R + +R  R GK DVLV
Sbjct: 221 AGGRGLAMVF-VRTRRTADKVAEDLDKRGFAAAAVHGDLGQGQREQALRAFRAGKVDVLV 279

Query: 638 GINLLREGLDI 648
             ++   G+DI
Sbjct: 280 ATDVAARGIDI 290


>gi|16331597|ref|NP_442325.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
 gi|3914015|sp|Q55750|MFD_SYNY3 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|1001661|dbj|BAA10395.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
          Length = 1199

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 1/126 (0%)

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           +   IV +  +    +  V +  +  + L+ G  ++ K L  +L +  Y+R       G 
Sbjct: 154 KGKAIVATEKALQPHLPPVATLREYCLALRRGQEMDSKSLELTLARLGYERGSTVETEGQ 213

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           +   GD ++IFP   E +  R+  FG+++E+I EF P + + + ++  + +   S     
Sbjct: 214 WSRRGDIVDIFPVSAE-LPVRLEWFGDELEKIREFDPASQRSLDDLTGLVLTPTSFDQVI 272

Query: 389 RPTLNT 394
            P LN 
Sbjct: 273 EPALNA 278


>gi|330838664|ref|YP_004413244.1| ATP-dependent DNA helicase RecG [Selenomonas sputigena ATCC 35185]
 gi|329746428|gb|AEB99784.1| ATP-dependent DNA helicase RecG [Selenomonas sputigena ATCC 35185]
          Length = 685

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           R +R   +H +++  E+  ++ D   GK DVLV   ++  G+D+P   ++ I +A++ G 
Sbjct: 506 REVRCGLVHGKLRGKEKEAVMADFHAGKLDVLVTTTVIEVGVDVPNASIMVIENAERFGL 565

Query: 665 LRSKTSLIQTIGRAARNVN 683
                 L Q  GR  R  +
Sbjct: 566 ----AQLHQLRGRVGRGAH 580


>gi|326563268|gb|EGE13535.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 46P47B1]
 gi|326569240|gb|EGE19301.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis BC7]
          Length = 698

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 9/96 (9%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL++ L   +IR   +H ++K  ++  +++  + G  D+L+   ++  G+D+P   L+ 
Sbjct: 513 EDLSDRL---DIRTGLIHGKMKAADKQAVMQAFKAGDIDLLIATTVIEVGVDVPNASLMV 569

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILY 689
           I +A++ G     + L Q  GR  R       V+LY
Sbjct: 570 IENAERLGL----SQLHQLRGRVGRGSAKSFCVLLY 601


>gi|325265712|ref|ZP_08132401.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
 gi|324982843|gb|EGC18466.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
          Length = 449

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E L + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   S + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRSGLAI 347


>gi|307571393|emb|CAR84572.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes L99]
          Length = 697

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 522 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 577

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  + S  IL AD  T+
Sbjct: 578 HQLRGRVGRGADQSYCILIADPKTE 602


>gi|295136419|ref|YP_003587095.1| transcription-repair coupling factor [Zunongwangia profunda SM-A87]
 gi|294984434|gb|ADF54899.1| transcription-repair coupling factor [Zunongwangia profunda SM-A87]
          Length = 1126

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 103/238 (43%), Gaps = 30/238 (12%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G+ GS  +F +A   +  +RP +++  +K  AA   ++ +     + V ++       
Sbjct: 35  LKGLIGSSLSFVVANAFKEAKRPFLLILNDKEEAAYHLNDLEQLIGEDNVLFY------- 87

Query: 233 QPEAYVPRTDTYIEKESSIN-----EQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGS 286
            P +Y  R    IE+  + N     E ++R+          +   ++V+    ++  + +
Sbjct: 88  -PGSY--RRPYQIEETDNANVLLRAEVLNRINS-------RKKPAVIVTYPDALFEKVVT 137

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            +   +  +++K+ D +    +   L + ++KR D     G F V G  I++F S   D 
Sbjct: 138 RKELDRSTLKIKVNDELSIDFVNEVLFEYKFKRVDFVTEPGEFSVRGGIIDVF-SFSNDE 196

Query: 347 AWRVSMFGNDIEEISEF---YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
            +R+  FG++++ I  F     L+  K+  +  +    N H    R +    +KYI E
Sbjct: 197 PYRIEFFGDEVDSIRSFDVETQLSTDKVNKISIMPNVENKHLDEVRESF---LKYIAE 251


>gi|291006385|ref|ZP_06564358.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 467

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL ++ T  TKR A+ L++ L ER      +H ++    R + +R  R GK D+LV
Sbjct: 232 ANGRGLSMIFT-RTKRTAQKLSDELTERGFAAAAVHGDLGQGAREQALRAFRSGKVDILV 290

Query: 638 GINLLREGLDI 648
             ++   G+D+
Sbjct: 291 ATDVAARGIDV 301


>gi|294880401|ref|XP_002768997.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
 gi|239872070|gb|EER01715.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
          Length = 689

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 7/133 (5%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +++ D+Y  +    ++GL  L+ V TKR A+++   L         +H +    ER E +
Sbjct: 445 SKLRDLYRVLEEQTEEGL-TLVFVETKRKADEIENMLRRDRYPATSIHGDRSQWEREEAL 503

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-S 684
           +  + G+  +LV  ++   GLDI    LV   D        +    +  IGR  R  N  
Sbjct: 504 KAFKSGELPILVATDVAARGLDISHVNLVINYD-----LPNNIDDYVHRIGRTGRAGNLG 558

Query: 685 KVILYADTITKSI 697
             I + +  +K I
Sbjct: 559 TAIAFVNEGSKPI 571


>gi|257792189|ref|YP_003182795.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|257476086|gb|ACV56406.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
          Length = 508

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   TK   ED  E L +   R   +HS+    +R   + + R G+  +LV  ++L 
Sbjct: 245 RVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVATDVLA 304

Query: 644 EGLDIPECGLVAILD 658
            G+D+P+   V   D
Sbjct: 305 RGIDVPDVDHVINFD 319


>gi|118574850|gb|ABL07003.1| DH [Medicago sativa]
          Length = 406

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R
Sbjct: 265 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQRERDAIMSEFR 319

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 320 VGTTRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 365


>gi|134097656|ref|YP_001103317.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133910279|emb|CAM00392.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 496

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL ++ T  TKR A+ L++ L ER      +H ++    R + +R  R GK D+LV
Sbjct: 232 ANGRGLSMIFT-RTKRTAQKLSDELTERGFAAAAVHGDLGQGAREQALRAFRSGKVDILV 290

Query: 638 GINLLREGLDI 648
             ++   G+D+
Sbjct: 291 ATDVAARGIDV 301


>gi|332088088|gb|EGI93213.1| ATP-dependent RNA helicase srmB [Shigella boydii 5216-82]
          Length = 442

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +VLV  ++  
Sbjct: 250 RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DIP+   V   D       RS  + +  IGR AR
Sbjct: 310 RGIDIPDVSHVFNFD-----MPRSGDTYLHRIGRTAR 341


>gi|322707759|gb|EFY99337.1| Dicer-like protein 2 [Metarhizium anisopliae ARSEF 23]
          Length = 1442

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           ++  R GK ++L+  ++L EG+D+P C +V   D  +     +  S +Q  GR AR   S
Sbjct: 501 LQSFRSGKINILIATSVLEEGIDVPACNMVICFDHPQ-----TPKSFLQRRGR-ARMKES 554

Query: 685 KVILYADTITKSI 697
           K+IL ++  + ++
Sbjct: 555 KLILLSEHSSSAV 567


>gi|294789302|ref|ZP_06754540.1| ATP-dependent RNA helicase RhlE [Simonsiella muelleri ATCC 29453]
 gi|294482727|gb|EFG30416.1| ATP-dependent RNA helicase RhlE [Simonsiella muelleri ATCC 29453]
          Length = 455

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E L + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              V   D  K+         +  IGR  R
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGR 339


>gi|301112965|ref|XP_002998253.1| eukaryotic initiation factor 4A-III, putative [Phytophthora
           infestans T30-4]
 gi|262112547|gb|EEY70599.1| eukaryotic initiation factor 4A-III, putative [Phytophthora
           infestans T30-4]
          Length = 406

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LT  + E N  V  MH ++   ER  I+++ R
Sbjct: 265 DLYDTLTIT-----QAVIFCNTKRKVDWLTSKMREANFTVSAMHGDMPQKERDAIMQEFR 319

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 320 SGGSRVLITTDVWGRGLDVQQVSLVICYD-----LPNNRELYIHRIGRSGR 365


>gi|240103715|ref|YP_002960024.1| DNA repair helicase, XPB-rad25 -like protein [Thermococcus
           gammatolerans EJ3]
 gi|239911269|gb|ACS34160.1| DNA repair helicase, XPB-rad25 -like protein [Thermococcus
           gammatolerans EJ3]
          Length = 462

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++G R+L+ V      + L E L    ++  ++ S+  +  R E++   + G+  VL+ 
Sbjct: 311 VRKGHRVLIDVKRIEHGKILKEMLDREGVKAEFLSSQ--SPNRWEVLEAYKNGEIPVLIS 368

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LL+EG+DIPE   + +    K     S    IQTIGRA R
Sbjct: 369 -TLLKEGVDIPEISAIILAGGGK-----SDIMTIQTIGRALR 404


>gi|225562366|gb|EEH10645.1| ATP-dependent RNA helicase DED1 [Ajellomyces capsulatus G186AR]
          Length = 694

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L+++L +  +    +H +    ER   +   R G+  +LV   +   G
Sbjct: 465 LVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTGRCPILVATAVAARG 524

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           LDIP    V   D   E         +  IGR  R  N+ +     + +K+ ++A
Sbjct: 525 LDIPNVTHVINYDLPNE-----IDDYVHRIGRTGRAGNTGISTAFFSRSKNFKIA 574


>gi|154279136|ref|XP_001540381.1| ATP-dependent RNA helicase ded1 [Ajellomyces capsulatus NAm1]
 gi|160380637|sp|A6R3L3|DED1_AJECN RecName: Full=ATP-dependent RNA helicase DED1
 gi|150412324|gb|EDN07711.1| ATP-dependent RNA helicase ded1 [Ajellomyces capsulatus NAm1]
          Length = 694

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L+++L +  +    +H +    ER   +   R G+  +LV   +   G
Sbjct: 465 LVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTGRCPILVATAVAARG 524

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           LDIP    V   D   E         +  IGR  R  N+ +     + +K+ ++A
Sbjct: 525 LDIPNVTHVINYDLPNE-----IDDYVHRIGRTGRAGNTGISTAFFSRSKNFKIA 574


>gi|118404346|ref|NP_001072473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Xenopus (Silurana)
           tropicalis]
 gi|112419339|gb|AAI21889.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Xenopus (Silurana)
           tropicalis]
          Length = 666

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++ V  K +A+DL+     + I V+ +H   +  +R + + D + GK  +LV  +L  
Sbjct: 507 KVIVFVGKKLVADDLSSDFSLQGIPVQSLHGNREQCDREQALDDFKKGKVRILVATDLAS 566

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     F R+    +  +GR  R
Sbjct: 567 RGLDVHDVTHVLNFD-----FPRNIEEYVHRVGRTGR 598


>gi|56119116|ref|NP_001007820.1| probable ATP-dependent RNA helicase DDX4 [Bos taurus]
 gi|75071078|sp|Q5W5U4|DDX4_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4
 gi|33332326|gb|AAQ11373.1| DEAD/H box polypeptide 4 [Bos taurus]
          Length = 729

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 544 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 603

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLA 700
            GLDI     V   D        +    +  IGR  R  N+ + I + D  + S QLA
Sbjct: 604 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDS-QLA 655


>gi|16077525|ref|NP_388339.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|1881268|dbj|BAA19295.1| ydbR [Bacillus subtilis]
 gi|2632758|emb|CAB12265.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 511

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L  R      +H ++   +R+  +R  + G  +VLV  ++   GLDI  
Sbjct: 267 TKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDI-- 324

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   + + + +     KS+  AI++TT+R+
Sbjct: 325 SGVTHVYNFD---VPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRK 380


>gi|27366603|ref|NP_762130.1| cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
 gi|37676317|ref|NP_936713.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|320158491|ref|YP_004190869.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
 gi|27358169|gb|AAO07120.1| Cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
 gi|37200858|dbj|BAC96683.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|319933803|gb|ADV88666.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
          Length = 641

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 11/74 (14%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA-----KVIEAMQRP-AIVMAPN 202
           P+  Q AAI  LL+G+ +  K Q     TG+GKT   +     K+  A ++P AIV+AP 
Sbjct: 29  PTPIQAAAIPHLLQGVDALGKAQ-----TGTGKTAAFSLPLLNKLDLAQRKPQAIVLAPT 83

Query: 203 KILAAQLYSEFKNF 216
           + LA Q+ +E KN 
Sbjct: 84  RELAIQVAAEMKNL 97


>gi|87300608|ref|ZP_01083450.1| putative ATP-dependent helicase [Synechococcus sp. WH 5701]
 gi|87284479|gb|EAQ76431.1| putative ATP-dependent helicase [Synechococcus sp. WH 5701]
          Length = 519

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER E IR LR G+  +L  ++L  EGLDIPE   V  L   +     S    +Q +GR  
Sbjct: 97  ERAEQIRRLRAGELQILFAVDLFNEGLDIPEIDTVLFLRPTE-----SAIVFLQQLGRGL 151

Query: 680 RNVNSKVIL 688
           R   SK  L
Sbjct: 152 RLHPSKSCL 160


>gi|296475821|gb|DAA17936.1| probable ATP-dependent RNA helicase DDX4 [Bos taurus]
          Length = 729

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 544 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 603

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLA 700
            GLDI     V   D        +    +  IGR  R  N+ + I + D  + S QLA
Sbjct: 604 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDS-QLA 655


>gi|256389420|ref|YP_003110984.1| transcription-repair coupling factor [Catenulispora acidiphila DSM
           44928]
 gi|256355646|gb|ACU69143.1| transcription-repair coupling factor [Catenulispora acidiphila DSM
           44928]
          Length = 1182

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 90/214 (42%), Gaps = 17/214 (7%)

Query: 179 SGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           S + F +A +  A     RP + +      A  L +  +       V  F S+ +    E
Sbjct: 38  SVRPFALAALARAQGPAGRPVLAVTATGREAEDLVAALRGLLDPETVVDFPSW-ETLPHE 96

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI- 294
              PR+DT   + + +     R+ H    +       +VV+ +  +     V+  + ++ 
Sbjct: 97  RLSPRSDTVGRRLAVLR----RLVHPDAATEGAGALKVVVAPIRSVLQ-PQVKGLADLVP 151

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           V  + G  ++  +L++ L    Y R D+   RG F V G  +++FP   E+   R+  +G
Sbjct: 152 VAARTGAEIDLDDLVNRLAAAAYTRTDLVDKRGEFAVRGGIVDVFPP-TEEHPLRLEFWG 210

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           + IEEI  F      K+ +  ++++  +  +  P
Sbjct: 211 DQIEEIRYF------KVADQRSLEVAEHGLWAPP 238


>gi|255017210|ref|ZP_05289336.1| hypothetical protein LmonF_04463 [Listeria monocytogenes FSL
           F2-515]
          Length = 394

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV  ++   GLDI  
Sbjct: 249 TKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R       I +           ++ETT++R 
Sbjct: 307 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRM 363

Query: 710 KQLE 713
           + L+
Sbjct: 364 QPLQ 367


>gi|150863861|ref|XP_001382482.2| Dead-Box Protein 8, ATP-dependent helicase involved in rRNA
           processing [Scheffersomyces stipitis CBS 6054]
 gi|158514820|sp|A3LP87|DBP8_PICST RecName: Full=ATP-dependent RNA helicase DBP8
 gi|149385117|gb|ABN64453.2| Dead-Box Protein 8, ATP-dependent helicase involved in rRNA
           processing [Scheffersomyces stipitis CBS 6054]
          Length = 445

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 9/88 (10%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE L   L +   RV  +HSE+   ER   ++  + G   +L+  ++   GLDIP   LV
Sbjct: 266 AEVLRRTLRKLEFRVASLHSEMPQSERTNSVQRFKAGAARILIATDVASRGLDIPSVELV 325

Query: 655 AILD--ADKEGFLRSKTSLIQTIGRAAR 680
              D  AD + F       I  +GR AR
Sbjct: 326 VNFDIPADPDDF-------IHRVGRTAR 346


>gi|156101964|ref|XP_001616675.1| ATP dependent RNA helicase [Plasmodium vivax SaI-1]
 gi|148805549|gb|EDL46948.1| ATP dependent RNA helicase, putative [Plasmodium vivax]
          Length = 1282

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V +K+  E +  +L E+ + VR  H+++   ++ E        +  ++V       G
Sbjct: 285 LIYVNSKKECESIFSFLKEKGLLVRMYHADLTNADKKEAHEKFLKDEVQIIVATVAFGMG 344

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILY 689
           +D P+     I      GF RS  + +Q +GRA R N N++ IL+
Sbjct: 345 IDKPD-----IRRIIHYGFSRSLEAYVQQVGRAGRDNSNAEAILF 384


>gi|148726561|emb|CAN88468.1| novel protein similar to vertebrate eukaryotic translation
           initiation factor 4A, isoform 2 (EIF4A2, zgc:63783)
           [Danio rerio]
          Length = 382

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 257 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDIIMREFRSGSSRVLITTDLLARGIDVQQ 316

Query: 651 CGLV 654
             LV
Sbjct: 317 VSLV 320


>gi|111220646|ref|YP_711440.1| putative ATP-dependent DNA helicase [Frankia alni ACN14a]
 gi|111148178|emb|CAJ59847.1| putative ATP-dependent DNA helicase [Frankia alni ACN14a]
          Length = 766

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           LTK  AE+LT +L      V   H   +  ERI    DL   +   LV  + L  G D P
Sbjct: 299 LTKAAAEELTAFLRGEGYPVACYHGGTEAAERIAAEEDLLANRVKALVATSALGMGFDKP 358

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVIL 688
           + G VA + A       S  S  Q IGRA R V  ++V+L
Sbjct: 359 DLGFVAHVGAPS-----SPISYYQQIGRAGRAVETAEVVL 393


>gi|116180300|ref|XP_001219999.1| hypothetical protein CHGG_00778 [Chaetomium globosum CBS 148.51]
 gi|121791807|sp|Q2HG76|MPH1_CHAGB RecName: Full=ATP-dependent DNA helicase MPH1
 gi|88185075|gb|EAQ92543.1| hypothetical protein CHGG_00778 [Chaetomium globosum CBS 148.51]
          Length = 1134

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  ++IE I   + G F+VLV  ++  EGLDI +  L+   DA       S   ++Q +
Sbjct: 593 MKQKQQIETIEKFKNGGFNVLVATSIGEEGLDIGQVDLIVCYDASA-----SPIRMLQRM 647

Query: 676 GRAARNVNSKVIL 688
           GR  R     ++L
Sbjct: 648 GRTGRKRAGNIVL 660


>gi|47096532|ref|ZP_00234122.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes str. 1/2a
           F6854]
 gi|47015064|gb|EAL06007.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes str. 1/2a
           F6854]
          Length = 697

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 522 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 577

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  + S  IL AD  T+
Sbjct: 578 HQLRGRVGRGADQSYCILIADPKTE 602


>gi|326565924|gb|EGE16085.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 103P14B1]
 gi|326575426|gb|EGE25351.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 101P30B1]
 gi|326577957|gb|EGE27821.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis O35E]
          Length = 698

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 9/96 (9%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL++ L   +IR   +H ++K  ++  +++  + G  D+L+   ++  G+D+P   L+ 
Sbjct: 513 EDLSDRL---DIRTGLIHGKMKAADKQAVMQAFKAGDIDLLIATTVIEVGVDVPNASLMV 569

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILY 689
           I +A++ G     + L Q  GR  R       V+LY
Sbjct: 570 IENAERLGL----SQLHQLRGRVGRGSAKSFCVLLY 601


>gi|322374710|ref|ZP_08049224.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C300]
 gi|321280210|gb|EFX57249.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C300]
          Length = 271

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           +T  L  R  R   +H ++   +R+ ++RD + G  DVLV  ++   GLDI   G+  + 
Sbjct: 1   MTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDI--SGVTHVY 58

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQLAIDETTRRREKQLE 713
           + D     +   S +  IGR  R   S   +   A      +Q+ I+  T++R K L+
Sbjct: 59  NYD---IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI-IENLTKKRMKGLK 112


>gi|317124068|ref|YP_004098180.1| transcription-repair coupling factor [Intrasporangium calvum DSM
           43043]
 gi|315588156|gb|ADU47453.1| transcription-repair coupling factor [Intrasporangium calvum DSM
           43043]
          Length = 1208

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 85/199 (42%), Gaps = 22/199 (11%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+      A  L +    F   + +  F S+ +    E   PR+DT   + + +   
Sbjct: 62  PIVVVTATTREAEDLATALGAFLSPDGIAVFPSW-ETLPHERLSPRSDTVGRRLAVLR-- 118

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELL 309
             R+ H            +VV+ V  +      G+G +     + V+L+ GD    ++++
Sbjct: 119 --RVAHPDLADSAYGPLSVVVAPVRALLQPVTKGLGEL-----VPVRLEAGDERPLEDVV 171

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369
            +L    Y R D+   RG F V G  +++FP   E+   RV  +G+ +EE+  F      
Sbjct: 172 DALAAAAYTRTDLVERRGEFAVRGGILDVFPP-TEEHPVRVEFWGDTVEEVRWF------ 224

Query: 370 KIRNVETIKIYANSHYVTP 388
           K+ +  +++I  +  +  P
Sbjct: 225 KVADQRSLEIAEHGLWAPP 243


>gi|322434403|ref|YP_004216615.1| ATP-dependent DNA helicase, RecQ family [Acidobacterium sp.
           MP5ACTX9]
 gi|321162130|gb|ADW67835.1| ATP-dependent DNA helicase, RecQ family [Acidobacterium sp.
           MP5ACTX9]
          Length = 587

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 96/237 (40%), Gaps = 51/237 (21%)

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLR----PT 524
           SLL VDE+H TIPQ    +  DF                   RP      N  +    P 
Sbjct: 140 SLLVVDEAH-TIPQ----WGHDF-------------------RPAFLSIGNARKALGDPP 175

Query: 525 TIVVSATPGSW-ELEQCQGIIVEQIIR-PTGL--------VDPPVEIRSARTQVEDVYDE 574
            + ++AT      LE  Q +  E   R  TG+        V P V   +   ++ D+   
Sbjct: 176 VLALTATATEQVALEILQSLHAEDATRIHTGIERENLFFSVHPTVSNEAKLARITDM--- 232

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             L  +QG  I+ T  + R A++L ++L ++ I   + H ++KT +R  I ++   G   
Sbjct: 233 --LTREQGTGIIYTA-SVRAADELYQHLTDQGISTAHYHGKMKTRDRELIQQEFMHGTHK 289

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILY 689
           V++       G+D P+   V   +     F  S  +  Q  GRA R+      V+LY
Sbjct: 290 VMIATKAFGLGIDKPDIRFVYHYE-----FPDSLETYYQEAGRAGRDGQPAHAVLLY 341


>gi|260887360|ref|ZP_05898623.1| ATP-dependent DNA helicase RecG [Selenomonas sputigena ATCC 35185]
 gi|260862898|gb|EEX77398.1| ATP-dependent DNA helicase RecG [Selenomonas sputigena ATCC 35185]
          Length = 711

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           R +R   +H +++  E+  ++ D   GK DVLV   ++  G+D+P   ++ I +A++ G 
Sbjct: 532 REVRCGLVHGKLRGKEKEAVMADFHAGKLDVLVTTTVIEVGVDVPNASIMVIENAERFGL 591

Query: 665 LRSKTSLIQTIGRAARNVN 683
                 L Q  GR  R  +
Sbjct: 592 ----AQLHQLRGRVGRGAH 606


>gi|320008320|gb|ADW03170.1| ATP-dependent DNA helicase RecG [Streptomyces flavogriseus ATCC
           33331]
          Length = 753

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +   ++ +++R    G+ DVLV   ++  G+++P   ++ I+DAD+ G  
Sbjct: 569 GLRVEVLHGRMPADDKDDVMRRFAAGQADVLVATTVIEVGVNVPNATVMVIMDADRFGV- 627

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R     + L
Sbjct: 628 ---SQLHQLRGRVGRGSAPGLCL 647


>gi|238021260|ref|ZP_04601686.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147]
 gi|237868240|gb|EEP69246.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147]
          Length = 449

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E L + LYE+      +H ++    R   + D+R G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTETLADELYEKGFAANCLHGDMPQGWRNRTLMDVRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
              V   D  K+         +  IGR  R   + + + +AD 
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAVSFADA 352


>gi|255089378|ref|XP_002506611.1| predicted protein [Micromonas sp. RCC299]
 gi|226521883|gb|ACO67869.1| predicted protein [Micromonas sp. RCC299]
          Length = 639

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A QGL  L+ V TKR A+ L ++L ++      +H +    ER   ++  R GK  +LV 
Sbjct: 434 AVQGL-TLVFVETKRGADQLEDWLSQQGFPSTSIHGDRTQQEREWALKSFRSGKTPILVA 492

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            ++   GLDIP    V   D   +         +  IGR  R
Sbjct: 493 TDVAARGLDIPHVTHVINFDLPSD-----VDDYVHRIGRTGR 529


>gi|194374847|dbj|BAG62538.1| unnamed protein product [Homo sapiens]
          Length = 661

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+I+  + G  ++LV  ++  EGLDIP C +V      + G L ++ S++Q  GRA
Sbjct: 405 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 455


>gi|119493499|ref|ZP_01624166.1| primosome assembly protein PriA [Lyngbya sp. PCC 8106]
 gi|119452682|gb|EAW33862.1| primosome assembly protein PriA [Lyngbya sp. PCC 8106]
          Length = 894

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 16/145 (11%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+R+ E+L +   E R IR     +  K   RI + R     + D+LVG  +L +GLD+ 
Sbjct: 656 TQRVVEELGKLFPELRIIRFDSDTTRTKDAHRILLTR-FAQREADLLVGTQMLTKGLDLA 714

Query: 650 ECGLVAILDADKEGFL---------RSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQL 699
              LV ++ AD  G L         R+  +L+Q  GRA R N   +VI+   T    +  
Sbjct: 715 GVSLVGVISAD--GLLHLSDYRASERAFQTLLQVAGRAGRGNDPGRVIIQTYTPEHPVIQ 772

Query: 700 AID--ETTRRREKQLEHNKKHNINP 722
           A+   E     E++LE  ++ N  P
Sbjct: 773 AVQGYEYEPFVERELEQRQELNYPP 797


>gi|114667313|ref|XP_001167051.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 5 [Pan
           troglodytes]
          Length = 678

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+I+  + G  ++LV  ++  EGLDIP C +V      + G L ++ S++Q  GRA
Sbjct: 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472


>gi|126434048|ref|YP_001069739.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           JLS]
 gi|126233848|gb|ABN97248.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS]
          Length = 507

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ + + L ER  +V  +H ++    R + ++  R G+ DVLV  ++   G+DI
Sbjct: 269 TKRTAQKVADELAERGFKVGAVHGDLGQGAREKALKSFRTGEVDVLVATDVAARGIDI 326


>gi|14861844|ref|NP_149068.1| putative ATP-dependent RNA helicase Pl10 [Mus musculus]
 gi|130256|sp|P16381|DDX3L_MOUSE RecName: Full=Putative ATP-dependent RNA helicase Pl10
 gi|200389|gb|AAA39942.1| PL10 protein [Mus musculus]
 gi|26325502|dbj|BAC26505.1| unnamed protein product [Mus musculus]
 gi|148681106|gb|EDL13053.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
 gi|223460348|gb|AAI39288.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
 gi|223461116|gb|AAI39287.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
          Length = 660

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L IL+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 432 DLLNATGKDSL-ILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 490

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 491 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 549

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 550 ---NITKDL 555


>gi|19074653|ref|NP_586159.1| putative ATP-DEPENDENT RNA HELICASE [Encephalitozoon cuniculi
           GB-M1]
 gi|74621115|sp|Q8SR63|RRP3_ENCCU RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|19069295|emb|CAD25763.1| putative ATP-DEPENDENT RNA HELICASE [Encephalitozoon cuniculi
           GB-M1]
          Length = 400

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 13/160 (8%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   QG+ +++ V     A  ++  L         +H E+   +R E +R  +  +F+VL
Sbjct: 234 LEMSQGMSVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  +L   GLDI    LV   D  K G        I  +GR AR   S        IT  
Sbjct: 294 VCTDLGSRGLDISHVDLVINFDVPKSG-----KDYIHRVGRTARAGRS-----GTAITLV 343

Query: 697 IQLAIDETTR---RREKQLEHNKKHNINPQSVKEKIMEVI 733
            Q  +++  +     EK+LE  K    N  ++  +I E I
Sbjct: 344 TQYDVEQIQKIEFTLEKKLEEFKMMKKNFGTICARIEEAI 383


>gi|240274195|gb|EER37713.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus H143]
 gi|325095426|gb|EGC48736.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus H88]
          Length = 487

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 36/71 (50%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+  L K+ A  +  ++  +  +V  +H ++   ER   +   +LG   VLV  ++  
Sbjct: 324 KVLVFCLYKKEATRIERFIRSKGFKVAGIHGDMNQTERFNSLDAFKLGSVPVLVATDVAA 383

Query: 644 EGLDIPECGLV 654
            GLDIP   LV
Sbjct: 384 RGLDIPAVKLV 394


>gi|241948951|ref|XP_002417198.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223640536|emb|CAX44790.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 399

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD  NL   Q +   +   TK     L + + ++N  V  MH ++K  ER  I+ + R
Sbjct: 258 DLYD--NLTITQAV---IFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNEFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D   DKE +       I  IGR+ R
Sbjct: 313 RGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENY-------IHRIGRSGR 358


>gi|193783596|dbj|BAG53507.1| unnamed protein product [Homo sapiens]
          Length = 487

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+I+  + G  ++LV  ++  EGLDIP C +V      + G L ++ S++Q  GRA
Sbjct: 385 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 435


>gi|10432595|dbj|BAB13818.1| unnamed protein product [Homo sapiens]
          Length = 678

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+I+  + G  ++LV  ++  EGLDIP C +V      + G L ++ S++Q  GRA
Sbjct: 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472


>gi|313637341|gb|EFS02825.1| ATP-dependent DNA helicase RecG [Listeria seeligeri FSL S4-171]
          Length = 682

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 507 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 562

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  + S  IL AD  T+
Sbjct: 563 HQLRGRVGRGADQSYCILIADPKTE 587


>gi|313632773|gb|EFR99739.1| ATP-dependent DNA helicase RecG [Listeria seeligeri FSL N1-067]
          Length = 682

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 507 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 562

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  + S  IL AD  T+
Sbjct: 563 HQLRGRVGRGADQSYCILIADPKTE 587


>gi|254281220|ref|NP_001123390.2| endoribonuclease Dicer [Xenopus (Silurana) tropicalis]
 gi|238064965|sp|B3DLA6|DICER_XENTR RecName: Full=Endoribonuclease Dicer
 gi|169261418|gb|ACA52289.1| endoribonuclease [Xenopus tropicalis]
          Length = 1893

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           EV+  ++ E++R  R  + ++L+  +++ EG+DIP+C LV   D   E       S +Q+
Sbjct: 486 EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPSE-----YRSYVQS 540

Query: 675 IGRAARNVNSKVILYADT 692
            GR AR   S  I+ AD+
Sbjct: 541 KGR-ARAPISNYIMLADS 557


>gi|221126994|ref|XP_002154563.1| PREDICTED: similar to RNA-directed RNA polymerase, partial [Hydra
           magnipapillata]
          Length = 2180

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 13/105 (12%)

Query: 584 RILLTVLTKRMAEDLTEYLYER----NIRVRYMHSEVKTL----ERIEIIRDLRLGKFDV 635
           ++L+ V TK +A  L ++L +     N R+ + H     +    E+   IRD   G+ ++
Sbjct: 427 KVLIFVHTKNVARALYKFLCDNFGMFNPRMVFGHGGYDGMLWEGEQELAIRDFATGECNL 486

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +V  ++L EGLD+ EC +V    +     ++S    IQ  GRA +
Sbjct: 487 IVATSVLEEGLDVAECDVVISFTS-----VKSLIQFIQVRGRARK 526


>gi|254468066|ref|ZP_05081472.1| primosomal protein N' [beta proteobacterium KB13]
 gi|207086876|gb|EDZ64159.1| primosomal protein N' [beta proteobacterium KB13]
          Length = 725

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           ++  D+   K D+LVG  +L +G D P   LV ILDAD   +        R  + L+Q  
Sbjct: 519 QLYADMHDQKLDILVGTQMLSKGHDFPHLTLVGILDADHALYSSDFRAGERLFSQLVQVA 578

Query: 676 GRAAR 680
           GR+ R
Sbjct: 579 GRSGR 583


>gi|239825779|ref|YP_002948403.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
 gi|239806072|gb|ACS23137.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
          Length = 466

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L  R      +H ++   +R+ ++R  + G  ++LV  ++   GLDI  
Sbjct: 249 TKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-AIDETTRRRE 709
            G+  + + D     +   S +  IGR  R   + V +   T  +  QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHNIERTTKRKM 363

Query: 710 KQLE 713
           ++++
Sbjct: 364 ERMK 367


>gi|149408122|ref|NP_077024.2| probable ATP-dependent RNA helicase DHX58 [Homo sapiens]
 gi|50401123|sp|Q96C10|DHX58_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DHX58; AltName:
           Full=Probable ATP-dependent helicase LGP2; AltName:
           Full=Protein D11Lgp2 homolog; AltName: Full=RIG-I-like
           receptor LGP2; Short=RLR
 gi|15928965|gb|AAH14949.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Homo sapiens]
 gi|119581201|gb|EAW60797.1| likely ortholog of mouse D11lgp2, isoform CRA_b [Homo sapiens]
 gi|119581202|gb|EAW60798.1| likely ortholog of mouse D11lgp2, isoform CRA_b [Homo sapiens]
 gi|325463123|gb|ADZ15332.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [synthetic construct]
          Length = 678

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+I+  + G  ++LV  ++  EGLDIP C +V      + G L ++ S++Q  GRA
Sbjct: 422 EVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 472


>gi|321253117|ref|XP_003192635.1| hypothetical protein CGB_C1160C [Cryptococcus gattii WM276]
 gi|317459104|gb|ADV20848.1| hypothetical protein CNBC0850 [Cryptococcus gattii WM276]
          Length = 396

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LTE + E N  V  MH E+   ER  I+ + R
Sbjct: 255 DLYDTLTIT-----QAVIFCNTRRKVDWLTEKMREANFTVSSMHGEMVQKERDAIMAEFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        S+ + +  IGR+ R
Sbjct: 310 GGQSRVLITTDVWARGIDVQQVSLVINYDLPT-----SRENYLHRIGRSGR 355


>gi|294812829|ref|ZP_06771472.1| ATP-dependent helicase [Streptomyces clavuligerus ATCC 27064]
 gi|294325428|gb|EFG07071.1| ATP-dependent helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 1045

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           +R L   ++ + A  + E     N+    +  E    +R + + DL+ G   ++  ++L 
Sbjct: 562 MRALGFCVSVQHAHYMAEEFRRNNLNAVALSGESSNSDRRKALDDLKSGAVQIIFSVDLF 621

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            EGLDIP+   V +L         S T  +Q +GR  R    K  L
Sbjct: 622 NEGLDIPDVDTVLMLRPTS-----SATIFLQQLGRGLRRSEGKPFL 662


>gi|282860072|ref|ZP_06269153.1| ATP-dependent RNA helicase DeaD family protein [Prevotella bivia
           JCVIHMP010]
 gi|282587160|gb|EFB92384.1| ATP-dependent RNA helicase DeaD family protein [Prevotella bivia
           JCVIHMP010]
          Length = 589

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K+  + +   L  ++I    MHS++   +R +++   + G+ DVLV  +++ 
Sbjct: 247 RVIIFSGSKQKVKQIASSLNRKHINCGEMHSDLDQAQRDDVMFKFKSGQIDVLVATDIVA 306

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            G+DI +  +V   D   D E +       +  IGR AR
Sbjct: 307 RGIDIDDITMVINYDVPHDVEDY-------VHRIGRTAR 338


>gi|194205947|ref|XP_001917975.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Equus caballus]
          Length = 785

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK+ A++L++ +  + +  + +H ++   +R   ++  R G F VLV  N+  
Sbjct: 442 RTIIFCETKKEAQELSQSVSIK-LDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAA 500

Query: 644 EGLDIPECGLV 654
            GLDIPE  LV
Sbjct: 501 RGLDIPEVDLV 511


>gi|163868513|ref|YP_001609722.1| ATP-dependent DNA helicase RecG [Bartonella tribocorum CIP 105476]
 gi|161018169|emb|CAK01727.1| ATP-dependent DNA helicase [Bartonella tribocorum CIP 105476]
          Length = 702

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 15/141 (10%)

Query: 567 QVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTE------YLYER-NIRVRYMHSEVK 617
           ++ ++ + I +A  +G  L  +  ++ +  A DLT       +L+ER    V  +H ++ 
Sbjct: 469 RIHELIERIAIALDKGEKLYWICPLVEESKALDLTSIENRFAFLHERFGTHVGMIHGKMS 528

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T E+   +   + G   +LV   ++  G+DIP+  ++ I  A+  G     + L Q  GR
Sbjct: 529 TAEKETAMASFKCGNTRILVATTVIEVGVDIPDASIIIIEHAEHFGL----SQLHQLRGR 584

Query: 678 AARN--VNSKVILYADTITKS 696
             R    +S ++LY + +TK+
Sbjct: 585 VGRGDKKSSCILLYKEPLTKT 605


>gi|121704948|ref|XP_001270737.1| DEAD/DEAH box RNA helicase, putative [Aspergillus clavatus NRRL 1]
 gi|119398883|gb|EAW09311.1| DEAD/DEAH box RNA helicase, putative [Aspergillus clavatus NRRL 1]
          Length = 584

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A    R L+ V TK  A+ L ++LY   +    +HS+    ER + +R  R  +  +L
Sbjct: 390 LLAMPPSRTLIFVNTKTQADFLDDFLYNMGLPSTSIHSDRTQREREDALRAFRTARCPIL 449

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSK-TSLIQTIGRAAR 680
           V   +   GLDI    ++ +++ D    +    T  I  IGR AR
Sbjct: 450 VATGVSARGLDIK--NVMHVINFDLPSVMHGGITEYIHRIGRTAR 492


>gi|328853782|gb|EGG02918.1| hypothetical protein MELLADRAFT_38323 [Melampsora larici-populina
           98AG31]
          Length = 554

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ++ E+IR  +  +F+VLV  ++  EGLDI     +   +A K     S   ++Q +GR  
Sbjct: 428 QQAEVIRKFKADEFNVLVATSIGEEGLDIGALDCIICYEAQK-----SPLRMLQRLGRTG 482

Query: 680 RNVNSKVIL 688
           RN + KVI+
Sbjct: 483 RNEDGKVIV 491


>gi|326576486|gb|EGE26394.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis CO72]
          Length = 698

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 9/96 (9%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL++ L   +IR   +H ++K  ++  +++  + G  D+L+   ++  G+D+P   L+ 
Sbjct: 513 EDLSDRL---DIRTGLIHGKMKAADKQAVMQAFKAGDIDLLIATTVIEVGVDVPNASLMV 569

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILY 689
           I +A++ G     + L Q  GR  R       V+LY
Sbjct: 570 IENAERLGL----SQLHQLRGRVGRGSAKSFCVLLY 601


>gi|313623266|gb|EFR93510.1| ATP-dependent DNA helicase RecG [Listeria innocua FSL J1-023]
          Length = 682

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 507 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 562

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  + S  IL AD  T+
Sbjct: 563 HQLRGRVGRGADQSYCILIADPKTE 587


>gi|313618310|gb|EFR90360.1| ATP-dependent DNA helicase RecG [Listeria innocua FSL S4-378]
          Length = 580

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 405 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 460

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  + S  IL AD  T+
Sbjct: 461 HQLRGRVGRGADQSYCILIADPKTE 485


>gi|301607421|ref|XP_002933320.1| PREDICTED: interferon-induced helicase C domain-containing protein
           1-like [Xenopus (Silurana) tropicalis]
          Length = 998

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 14/108 (12%)

Query: 599 TEYLYERNIRVRYM-----HSEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            E   E  IR  Y+     +S+ K +   E+ +II     G+ ++LV  ++  EGLDI E
Sbjct: 712 NEKFTEVGIRSSYLIGAGHNSDFKPMTQNEQKQIIHKFSTGELNLLVATSVAEEGLDIKE 771

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           C +V      + G + ++ +++Q  GR AR  +S  +L A + + +I+
Sbjct: 772 CNVVI-----RYGLVTNEIAMVQARGR-ARADDSSYVLVAPSSSGAIE 813


>gi|261204964|ref|XP_002627219.1| eukaryotic initiation factor 4A [Ajellomyces dermatitidis SLH14081]
 gi|239592278|gb|EEQ74859.1| eukaryotic initiation factor 4A [Ajellomyces dermatitidis SLH14081]
 gi|239611568|gb|EEQ88555.1| eukaryotic initiation factor 4A [Ajellomyces dermatitidis ER-3]
 gi|327348420|gb|EGE77277.1| ATP-dependent RNA helicase eIF4A [Ajellomyces dermatitidis ATCC
           18188]
          Length = 398

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 273 TRRKVDWLTDKLTARDFTVSAMHGDMEQQQRDIIMKEFRSGSSRVLIATDLLARGIDVQQ 332

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 333 VSLVINYDLPANRENYI 349


>gi|213420793|ref|ZP_03353859.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 445

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 124/303 (40%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCQHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E   +
Sbjct: 130 --------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQ-PY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + +    
Sbjct: 181 RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWR-DTF 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E++++     A+ + Q+++         G+  +   Y + L      EP P LF Y P +
Sbjct: 236 EVKRD-----AEHIYQQVS--------KGTLPAGIEYWQPLFF---SEPLPPLFSYFPAN 279

Query: 469 SLL 471
           +L+
Sbjct: 280 TLV 282


>gi|152971432|ref|YP_001336541.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896027|ref|YP_002920763.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae NTUH-K2044]
 gi|262040311|ref|ZP_06013562.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|150956281|gb|ABR78311.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238548345|dbj|BAH64696.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259042420|gb|EEW43440.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 443

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 575 INLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +NL  Q +  R ++ V  +    +L  +L E  I   ++  E+   +R E I+ L  G+ 
Sbjct: 240 VNLLQQPEATRAIVFVRKRERVHELANWLREAGINTCWLEGEMVQAKRNEAIKRLTDGRV 299

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +VL+  ++   G+DIP+   V   D       R+  + +  IGR  R
Sbjct: 300 NVLIATDVAARGIDIPDVSHVFNFD-----MPRTADTYLHRIGRTGR 341


>gi|146414784|ref|XP_001483362.1| hypothetical protein PGUG_04091 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 433

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE L   L + +IRV  +HSE+   ER   +   R G   VL+  ++   GLDIP   LV
Sbjct: 266 AEILRRTLRKLDIRVASLHSEMPQSERTNSLHRFRAGAARVLIATDVASRGLDIPNVELV 325

Query: 655 AILD--ADKEGFLRSKTSLIQTIGRAAR 680
              D  AD + +       I  +GR AR
Sbjct: 326 VNQDIPADPDDY-------IHRVGRTAR 346


>gi|62858607|ref|NP_001016345.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 [Xenopus (Silurana)
           tropicalis]
 gi|89266955|emb|CAJ81385.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 [Xenopus (Silurana)
           tropicalis]
          Length = 479

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+++A  L+ ++ E   +V  +  E+   +R E+I+  R GK  VLV  N+   G+D+ +
Sbjct: 343 TRKIANWLSRHMLEDGHQVALLSGELSVCDRAEMIQRFREGKDKVLVTTNVCARGIDVEQ 402

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
             +V   D   + +G +  +T L   IGR  R
Sbjct: 403 VSIVVNFDLPVNVDGSVDFETYL-HRIGRTGR 433


>gi|58265474|ref|XP_569893.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108955|ref|XP_776592.1| hypothetical protein CNBC0850 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74686072|sp|Q5KJJ2|FAL1_CRYNE RecName: Full=ATP-dependent RNA helicase FAL1
 gi|50259272|gb|EAL21945.1| hypothetical protein CNBC0850 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226125|gb|AAW42586.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 396

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LTE + E N  V  MH E+   ER  I+ + R
Sbjct: 255 DLYDTLTIT-----QAVIFCNTRRKVDWLTEKMREANFTVSSMHGEMVQKERDAIMAEFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        S+ + +  IGR+ R
Sbjct: 310 GGQSRVLITTDVWARGIDVQQVSLVINYDLPT-----SRENYLHRIGRSGR 355


>gi|311071129|ref|YP_003976052.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
 gi|310871646|gb|ADP35121.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
          Length = 497

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R      +H ++   +R+  +R  + G  +VLV  ++   GLDI  
Sbjct: 250 TKRRVDELSEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDI-- 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKSIQLAIDETTRRR 708
            G+  + + D     +   S +  IGR  R   + + + +     K +  AI++TT+R+
Sbjct: 308 SGVTHVYNFD---VPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRK 363


>gi|301612200|ref|XP_002935570.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Xenopus (Silurana)
           tropicalis]
          Length = 943

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 2/104 (1%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V  K  AE+L   L + +  +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 499 VLIFVTKKANAEELANNLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVLVATDVAAR 558

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GLDIP    V   D  ++  + + T  I   GRA     +  +L
Sbjct: 559 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGEKGVAHTLL 600


>gi|291541583|emb|CBL14693.1| DNA or RNA helicases of superfamily II [Ruminococcus bromii L2-63]
          Length = 446

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 2/100 (2%)

Query: 560 EIRSARTQVEDVYDEINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           EI  A T+     D I    Q   G + +    T + +    +   E  I  R++     
Sbjct: 190 EIEKAMTKNTVFGDVIKYYRQLADGKKAVCYCSTVKHSMATAQAFCEAGISARHIDGATP 249

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
             +R +II + R GK  +L  ++L+ EG D+P+C    +L
Sbjct: 250 KAQREQIINEFRSGKITILCNVDLISEGFDVPDCECTILL 289


>gi|255018656|ref|ZP_05290782.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL F2-515]
          Length = 190

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 44  MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 99

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  + S  IL AD  T+
Sbjct: 100 HQLRGRVGRGADQSYCILIADPKTE 124


>gi|229077333|ref|ZP_04210009.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-2]
 gi|228705971|gb|EEL58283.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-2]
          Length = 968

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 650 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 708

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 709 ---SQLYQLRGRVGRS 721


>gi|189235329|ref|XP_975300.2| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
           [Tribolium castaneum]
          Length = 553

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A+ L   L    I V  +H++   L+R   +R  R G+  VL+   L+  
Sbjct: 365 VLVFVQSKDRAQQLFNELIYDGINVDAIHADRTQLQRDNTVRSFREGRIWVLICTELMAR 424

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D     LV   D     F  S  S +  +GRA R
Sbjct: 425 GIDFKGVNLVINYD-----FPPSAISYVHRVGRAGR 455


>gi|167748599|ref|ZP_02420726.1| hypothetical protein ANACAC_03372 [Anaerostipes caccae DSM 14662]
 gi|167651913|gb|EDR96042.1| hypothetical protein ANACAC_03372 [Anaerostipes caccae DSM 14662]
          Length = 478

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+ M   L + L  + I    +H +++  ER++ +   R G F  L+  ++   G+D  E
Sbjct: 250 TREMTNVLFQKLRRKRIFCGMLHGDMEQKERLKTVNAFRRGGFRFLIATDVAARGIDFEE 309

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
              V   D     F   K + +  IGR  RN NS
Sbjct: 310 ISHVVNYD-----FPTGKETYVHRIGRTGRNGNS 338


>gi|152993498|ref|YP_001359219.1| ATP-dependent DNA helicase RecG [Sulfurovum sp. NBC37-1]
 gi|151425359|dbj|BAF72862.1| ATP-dependent DNA recombinase RecG [Sulfurovum sp. NBC37-1]
          Length = 602

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 152 DQPAAIAQLLKGIHSREKV--QLLLGVTGSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQ 208
           +Q   I Q+ K +   +K   ++++G  GSGKT   +A V+ A+   +I+MAP  +LA Q
Sbjct: 227 EQQNVIVQIRKDLAREDKAAKRMIVGDVGSGKTMVILASVMMALPHKSILMAPTSLLALQ 286

Query: 209 LYSEFKNFFP 218
           LY E     P
Sbjct: 287 LYEEACKHLP 296


>gi|113197617|gb|AAI21215.1| zinc responsive protein Zd10A [Xenopus (Silurana) tropicalis]
          Length = 479

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+++A  L+ ++ E   +V  +  E+   +R E+I+  R GK  VLV  N+   G+D+ +
Sbjct: 343 TRKIANWLSRHMLEDGHQVALLSGELSVCDRAEMIQRFREGKDKVLVTTNVCARGIDVEQ 402

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
             +V   D   + +G +  +T L   IGR  R
Sbjct: 403 VSIVVNFDLPVNVDGSVDFETYL-HRIGRTGR 433


>gi|84387538|ref|ZP_00990556.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
 gi|84377586|gb|EAP94451.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
          Length = 531

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 4/128 (3%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TK  A  L+ +L E+ I    +H       R + + + + GK  VLV  ++  
Sbjct: 245 QVLVFSKTKHGANKLSHFLDEQGISAAPIHGNKSQGARTKALENFKTGKVRVLVATDIAA 304

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK--SIQLAI 701
            G+DIP+  L  +++ D           I   GRA     +  ++ AD + +   I+  I
Sbjct: 305 RGIDIPQ--LPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIERLI 362

Query: 702 DETTRRRE 709
            +   RRE
Sbjct: 363 QQVLERRE 370


>gi|331698532|ref|YP_004334771.1| ATP-dependent DNA helicase RecG [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953221|gb|AEA26918.1| ATP-dependent DNA helicase RecG [Pseudonocardia dioxanivorans
           CB1190]
          Length = 748

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H ++   E+   +R    G+ DVLV   ++  G+D+P    + ILDAD+ G  
Sbjct: 563 GLRLGILHGKLPADEKDATMRAFEAGEIDVLVATTVIEVGVDVPNSTGMVILDADRFGL- 621

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R     V L
Sbjct: 622 ---SQLHQLRGRVGRGEAPGVCL 641


>gi|289625459|ref|ZP_06458413.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330866514|gb|EGH01223.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 691

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L+  L E  IRV  +H  +K  E+  I+ + + G   +LV   ++  G+D+P   L+ 
Sbjct: 507 EELSSALGE--IRVGLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLMI 564

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 565 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 602


>gi|268325930|emb|CBH39518.1| putative ATP-dependent RNA helicase [uncultured archaeon]
          Length = 780

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  E++EII   + G ++VLV  ++  EGLDIP   LV   +      + S    IQ  
Sbjct: 418 LKQKEQVEIITKFKAGDYNVLVATSVAEEGLDIPATDLVLFYEP-----IPSAIRSIQRK 472

Query: 676 GRAARNVNSKVILYADTITK 695
           GR AR    KVI+     TK
Sbjct: 473 GRTARKKVGKVIVLIAKGTK 492


>gi|195379282|ref|XP_002048409.1| GJ13954 [Drosophila virilis]
 gi|194155567|gb|EDW70751.1| GJ13954 [Drosophila virilis]
          Length = 605

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +QGL+  +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G   VL+
Sbjct: 368 RQGLQPPVLVFVQSKDRAKQLFEELLYDGINVDVIHAERTQHQRDNCVRAFREGHIWVLI 427

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+  G+D     LV   D     F  S  S I  IGR  R
Sbjct: 428 CTELMGRGIDFKGVNLVINYD-----FPPSTISYIHRIGRTGR 465


>gi|194763631|ref|XP_001963936.1| GF20995 [Drosophila ananassae]
 gi|190618861|gb|EDV34385.1| GF20995 [Drosophila ananassae]
          Length = 996

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I++ V TK   ED+ + +         +H +    ER  +++D R GK ++L+  ++  
Sbjct: 502 KIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVLKDFRNGKSNILIATDVAS 561

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     +  S  + +  IGR  R
Sbjct: 562 RGLDVEDLQYVINYD-----YPNSSENYVHRIGRTGR 593


>gi|170017653|ref|YP_001728572.1| ATP-dependent DNA helicase RecG [Leuconostoc citreum KM20]
 gi|169804510|gb|ACA83128.1| ATP-dependent DNA helicase RecG [Leuconostoc citreum KM20]
          Length = 676

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 9/104 (8%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           T + + M  +L +Y      ++  +H  +   E+ +++ D +  +  +LV   ++  G+D
Sbjct: 484 TAMYEAMQLELPQY------QIGLLHGRLSNDEKKQLMEDFKANRIQILVATTVIEVGVD 537

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +P   ++ ILDAD+ G L     L   +GR  R   S  IL AD
Sbjct: 538 VPNASVMLILDADRFG-LAQLHQLRGRVGRGKR--QSYTILVAD 578


>gi|48696457|ref|YP_024499.1| putative helicase [Staphylococcus phage K]
 gi|66394961|ref|YP_240935.1| ORF012 [Staphylococcus phage G1]
 gi|37729151|gb|AAO47518.1| ORF69 [Staphylococcus phage K]
 gi|62636983|gb|AAX92094.1| ORF012 [Staphylococcus phage G1]
 gi|182627928|gb|ACB89090.1| gp ORF097 [Staphylococcus phage A5W]
          Length = 582

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            + ++E L + ++   ++H E+ +  R E + D+R GK  V++  +L+ EG+DI   G+ 
Sbjct: 458 GDTISEMLNDLDVEHYFLHGEIDSETRREKLNDMRSGKLKVMIATSLIDEGVDI--SGIN 515

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR 680
           A++       LR     +Q IGRA R
Sbjct: 516 ALILGAGGKSLRQT---LQRIGRALR 538


>gi|74694926|sp|Q75C39|DBP5_ASHGO RecName: Full=ATP-dependent RNA helicase DBP5
          Length = 467

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 39/73 (53%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L     +V  +H ++++ +R  +I D R G+  VL+  N+L  G
Sbjct: 320 IIFVQTKQTANMLYTELKREGHQVSILHGDLQSADRDRLIGDFREGRSKVLITTNVLARG 379

Query: 646 LDIPECGLVAILD 658
           +DIP   +V   D
Sbjct: 380 IDIPTVSMVVNYD 392


>gi|15669706|ref|NP_248519.1| reverse gyrase [Methanocaldococcus jannaschii DSM 2661]
 gi|42559436|sp|Q58907|RGYR_METJA RecName: Full=Reverse gyrase; Includes: RecName: Full=Helicase;
           Includes: RecName: Full=Topoisomerase; Contains:
           RecName: Full=Mja r-Gyr intein
 gi|1500401|gb|AAB99531.1| reverse gyrase, intein containing (rgy) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 1613

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 19/97 (19%)

Query: 568 VEDVYDE----------INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           V D+YDE          I L    G+  +        A+++ +YL E NI+ + +HS+ K
Sbjct: 301 VVDIYDEEFSKEKILEYIKLFGSGGIVFVSIDYGVEKAQEIEKYLLENNIKAKLIHSKDK 360

Query: 618 TLERIEIIRDLRLGKFDVLVGI----NLLREGLDIPE 650
                +   D R GK DVL+G+     +L  GLD+PE
Sbjct: 361 -----KGFDDFREGKIDVLIGVASYYGVLVRGLDMPE 392


>gi|121602625|ref|YP_989090.1| transcription-repair coupling factor [Bartonella bacilliformis
           KC583]
 gi|120614802|gb|ABM45403.1| transcription-repair coupling factor [Bartonella bacilliformis
           KC583]
          Length = 1163

 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 93/211 (44%), Gaps = 25/211 (11%)

Query: 172 LLLGVTGSGKTFTMAKVIE--AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY- 228
           +L G+    + F +A++    A  +P + +  ++   A L        P+  V +F ++ 
Sbjct: 18  ILDGIIDGVEAFALAQLSTEIAQGKPLVYVVRDETKIAHLQQALSFIEPNLPVLHFPAWD 77

Query: 229 ---YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
              YD   P        T   +  S+   I  +R++   ++      IV ++ + I  + 
Sbjct: 78  CLPYDRVSPAI------TITARRLSVLAHISTLRNNPHPAI------IVTTANAIIQRLP 125

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR--GTFRVCGDSIEIF-PSH 342
                   I+ +++G  V+   L+  L +  ++R  +GI+R  G F V G  I+IF PS 
Sbjct: 126 PCAMIDNQILHVRVGQRVDMDHLIHYLERNNFER--VGIVRDVGEFAVRGGIIDIFSPSE 183

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
           +E    R+  FG+ +E I  F   T + I+N
Sbjct: 184 VE--PSRLDFFGDTLETIRVFDTETQRTIKN 212


>gi|330996590|ref|ZP_08320470.1| helicase protein [Paraprevotella xylaniphila YIT 11841]
 gi|329572824|gb|EGG54451.1| helicase protein [Paraprevotella xylaniphila YIT 11841]
          Length = 767

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 12/129 (9%)

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+ + +  +E +Y+ +   A  G + ++  +    A  +  +  +R I    + S+  T 
Sbjct: 212 EVLNRKPCIEQLYESVRQYAD-GKKGIVYAICISHARSIAGFYRQRGINSVAIDSKTPTR 270

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL---IQTIG 676
           +R ++I + + GK  VLV +++  EG D P+   + +         R   SL   +Q +G
Sbjct: 271 QRKQLIENFKRGKIQVLVNVDVFSEGFDCPDVEFIQM--------ARPTLSLAKYLQQVG 322

Query: 677 RAARNVNSK 685
           R  R    K
Sbjct: 323 RGLRKATGK 331


>gi|329850695|ref|ZP_08265540.1| transcription-repair coupling factor [Asticcacaulis biprosthecum
           C19]
 gi|328841010|gb|EGF90581.1| transcription-repair coupling factor [Asticcacaulis biprosthecum
           C19]
          Length = 1161

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + LK G +++  +L +  V   Y R      RG F V G  +++FP    D   R+  FG
Sbjct: 131 LSLKPGLTIDMTDLDAYFVNNGYTRVSTVAERGEFAVRGGLVDVFPPS-ADEPVRLDFFG 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANS 383
           + +E I  F P T + ++ +  +   A S
Sbjct: 190 DSLESIRSFDPETQRSLKQISQLNFTAVS 218


>gi|329116832|ref|ZP_08245549.1| ATP-dependent DNA helicase RecG [Streptococcus parauberis NCFD
           2020]
 gi|326907237|gb|EGE54151.1| ATP-dependent DNA helicase RecG [Streptococcus parauberis NCFD
           2020]
          Length = 671

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 6/101 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L +Y ++ + R+  MH ++K  ++  I++  +  + D+LV   ++  G+++P   ++ I
Sbjct: 487 ELKDY-FKESARIALMHGKMKNEDKDAIMQAFKNKETDLLVSTTVIEVGVNVPNATIMMI 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           +DAD+ G     + L Q  GR  R +  S  IL A+  T S
Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGHKQSYAILVANPKTDS 582


>gi|258652096|ref|YP_003201252.1| ATP-dependent DNA helicase RecG [Nakamurella multipartita DSM
           44233]
 gi|258555321|gb|ACV78263.1| ATP-dependent DNA helicase RecG [Nakamurella multipartita DSM
           44233]
          Length = 760

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++RV  +H  +   E+  ++     G+ DVLV   ++  G+D+P   ++ I+DA++ G  
Sbjct: 576 DLRVGVLHGRLVPAEKDAVMTAFAAGELDVLVATTVIEVGVDVPNATMMVIMDAERFGM- 634

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R     + L
Sbjct: 635 ---SQLHQLRGRVGRGSAPGICL 654


>gi|225849264|ref|YP_002729428.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644065|gb|ACN99115.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 397

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L+  Q  + ++   TK  A+ L+E L +    V  +H +    +R  ++ + R GK  +L
Sbjct: 239 LSQNQAEKTIIFTQTKLEADQLSEDLSKEGFSVSAIHGDFSQKKRETVLHNFRTGKLKIL 298

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLDI    LV        G  ++  S +  IGR  R
Sbjct: 299 VATDVAARGLDIKGVELVI-----NYGLPKNAESYVHRIGRTGR 337


>gi|213513760|ref|NP_001133649.1| Probable ATP-dependent RNA helicase DHX58 [Salmo salar]
 gi|209154816|gb|ACI33640.1| Probable ATP-dependent RNA helicase DHX58 [Salmo salar]
          Length = 678

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+ E IR  R G  ++L+  ++  EGLDIPEC LV      + G L ++ +  Q  GRA
Sbjct: 421 EQKETIRTFRRGSLNLLISTSVAEEGLDIPECNLVV-----RYGLLTNEIAQQQASGRA 474


>gi|116873246|ref|YP_850027.1| ATP-dependent DNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742124|emb|CAK21248.1| ATP-dependent DNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 682

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 507 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 562

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  + S  IL AD  T+
Sbjct: 563 HQLRGRVGRGADQSYCILIADPKTE 587


>gi|119719922|ref|YP_920417.1| DEAD/DEAH box helicase domain-containing protein [Thermofilum
           pendens Hrk 5]
 gi|119525042|gb|ABL78414.1| DEAD/DEAH box helicase domain protein [Thermofilum pendens Hrk 5]
          Length = 946

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 23/183 (12%)

Query: 568 VEDVYDEINLAAQ--------QGLRILLTVLTKRMAEDLTEYL---YERNIRVRYMHSEV 616
           VED+ +E +LA +        +G  +++   T+  AE +   L   Y  N+RV   H  +
Sbjct: 237 VEDIDEEGDLAGRVKRVAELCRGGGVIVFTNTRDTAEFIGRVLARDYGLNVRVH--HGSL 294

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
              ER E  R  + G+ D +V  + L  G+DI    LV      + G  R    L Q +G
Sbjct: 295 SRQEREEAERLFKSGRVDAIVATSSLELGVDIGYARLVV-----QFGSPRQAIKLAQRVG 349

Query: 677 RAARN---VNSKVI--LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           RA  +   V+  VI  LY +   +S  LA     R  EKQ  H K  ++    V   ++E
Sbjct: 350 RAGHSLSEVSRGVIVPLYLEDAVESAVLARRVYLRALEKQGFHEKPLDVLSHQVAGLVLE 409

Query: 732 VID 734
             D
Sbjct: 410 YRD 412


>gi|91793030|ref|YP_562681.1| transcription-repair coupling factor [Shewanella denitrificans
           OS217]
 gi|91715032|gb|ABE54958.1| transcription-repair coupling factor [Shewanella denitrificans
           OS217]
          Length = 1179

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 9/118 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A+DL + L E   RV   H +++  +  +++ D    +F+VLV   ++  G+D+P  
Sbjct: 852 EKCAQDLRDLLPE--ARVVTGHGQMRERDLEKVMADFYHQRFNVLVCTTIIETGIDVPSA 909

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             + I  ADK G       L Q  GR  R+ +     YA  IT  I+L   +  +R E
Sbjct: 910 NTIVIDRADKFGL----AQLHQLRGRVGRSHHQA---YAYMITPPIKLISTDARKRLE 960



 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 58/305 (19%), Positives = 131/305 (42%), Gaps = 34/305 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           ++ Q L+ + G  ++ ++A++I A +  ++++  +   A  L +E      ++ V   + 
Sbjct: 16  QQTQRLVTLGGLSQSLSLAQLILANKGTSLIVTHDTPTAMLLETELHYLLANHDVNLCLF 75

Query: 228 YYDYYQP-EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
                 P +++ P  D   ++  ++  Q+  + H+A          ++V   + +  +  
Sbjct: 76  PDRETLPYDSFSPHQDLISQRLETL-AQLGNLGHNA----------VIVPINTLMVRLPP 124

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
               S  ++ LK GD+   + +   LV   Y   +     G F + G  ++IFP+  +  
Sbjct: 125 QSYLSANVMVLKKGDTYALQTVRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPTGCQQ- 183

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F ++IE I  F   T +    V+ I++     + T     + A++  ++  + R
Sbjct: 184 PLRIELFDDEIESIRHFDVETQRSEVAVDAIRMLPAKEFATD----SAAIEGFRQRYRRR 239

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
              + K     EA+ + Q ++ +L           IENY          +   +LF+Y+P
Sbjct: 240 FEVISK-----EAESVYQLVSRNL-------MPAGIENYLPLFF-----DDTASLFDYLP 282

Query: 467 EDSLL 471
           E++ L
Sbjct: 283 ENTQL 287


>gi|227525|prf||1705301A ATP dependent RNA helicase
          Length = 697

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LYE       +H +    +R E +   R GK
Sbjct: 474 DLLNATGKDSL-TLVFVETKKGADALEDFLYEEGYACTSIHGDRSQRDREEALHQFRSGK 532

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N K I 
Sbjct: 533 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVERIGRTGRVGNLGLATSFFNEKNI- 591

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 592 ---NITKDL 597


>gi|319440509|ref|ZP_07989665.1| ATP-dependent DNA helicase [Corynebacterium variabile DSM 44702]
          Length = 745

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  +    + E++ DL  G+ DVLV   ++  G+DIPE  ++ ++DA+  G  
Sbjct: 568 GLRIGRLHGRMD--NKAEVMADLASGEIDVLVATTVVEVGVDIPEATVMVVVDAENFGV- 624

Query: 666 RSKTSLIQTIGRAARNVNSK 685
              + L Q  GR  R  ++ 
Sbjct: 625 ---SQLHQLRGRVGRGADNS 641


>gi|302416733|ref|XP_003006198.1| ATP-dependent RNA helicase ded1 [Verticillium albo-atrum VaMs.102]
 gi|261355614|gb|EEY18042.1| ATP-dependent RNA helicase ded1 [Verticillium albo-atrum VaMs.102]
          Length = 676

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 5/99 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L  ++     +H +    ER   +   R G+  +LV   +   G
Sbjct: 444 LIFVETKRMADSLSDFLINQSFPATSIHGDRTQRERERALEFFRNGRCPILVATAVAARG 503

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           LDIP    V   D   +         +  IGR  R  N+
Sbjct: 504 LDIPNVTHVVNYDLPTD-----IDDYVHRIGRTGRAGNT 537


>gi|14590845|ref|NP_142917.1| helicase [Pyrococcus horikoshii OT3]
 gi|3257417|dbj|BAA30100.1| 873aa long hypothetical helicase [Pyrococcus horikoshii OT3]
          Length = 873

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 8/114 (7%)

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER +I RD R G   VL+  N L  G+D+ +   V       +G      SLIQ  GRA
Sbjct: 316 LERWKIERDFREGNLKVLLATNALELGIDVGDLDAVINYGIPSDGLF----SLIQRFGRA 371

Query: 679 ARNVN----SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            R+ N    + +IL  + +    +   DE     EK L      N+  + + +K
Sbjct: 372 GRDPNRVAINGIILRKNGLDYYYKEHFDELVEGIEKGLVDKIPVNLGNEKIAKK 425


>gi|295693180|ref|YP_003601790.1| ATP-dependent DNA helicase recg [Lactobacillus crispatus ST1]
 gi|295031286|emb|CBL50765.1| ATP-dependent DNA helicase RecG [Lactobacillus crispatus ST1]
          Length = 678

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 17/188 (9%)

Query: 522 RPTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           +P  + ++ATP   +  L     + V +I        P +      +Q+++VY ++    
Sbjct: 403 QPDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISTWKTSSQMKEVYRQMQEQL 462

Query: 580 QQGLRI-----LLT---VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLR 629
            QG +I     L+T    L  + AE+L E L     + +V  +H ++   ++ EI+    
Sbjct: 463 NQGFQIYAVTPLITESETLDLKNAEELHEKLSHDFPDQKVVLLHGQMPGAQKDEIMAAFA 522

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVIL 688
            G+ ++LV  +++  G+D+    ++ I +AD+ G     + L Q  GR  R    S  + 
Sbjct: 523 AGEINILVTTSVIEVGVDVANANMMVIYNADRFGL----SQLHQLRGRIGRGRTQSYCVF 578

Query: 689 YADTITKS 696
            AD  T S
Sbjct: 579 LADPKTDS 586


>gi|195438679|ref|XP_002067260.1| GK16276 [Drosophila willistoni]
 gi|194163345|gb|EDW78246.1| GK16276 [Drosophila willistoni]
          Length = 950

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I++ V TK   ED+ + +         +H +    ER  +++D R GK ++L+  ++  
Sbjct: 498 KIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVLKDFRNGKSNILIATDVAS 557

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     +  S  + +  IGR  R
Sbjct: 558 RGLDVEDLQYVINYD-----YPNSSENYVHRIGRTGR 589


>gi|104773517|ref|YP_618497.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103422598|emb|CAI97201.1| Transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 1158

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 64/322 (19%), Positives = 129/322 (40%), Gaps = 35/322 (10%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           SR K  LL GV        +   +  + +P +++  N+  A + +++       + +E F
Sbjct: 21  SRIKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERHNDLSRLLADDDLELF 80

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
           V   +          T T +     ++ +I          L  R   ++ +     Y + 
Sbjct: 81  VLDGNL--------ATQTAVSSPDELSSRI----QCLNLLLSGRPGVVIATPQGLQYPLS 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +   + +      +GD +   +L   L +  Y R+++ +  G F + GD ++++P   E 
Sbjct: 129 APALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRES 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+  FG++I+ I  F  LT Q  R++E +          P  T+  A  ++      
Sbjct: 189 -PLRLEFFGDEIDTIKTF-DLTSQ--RSLEEL----------PEATVPAASDHV-----F 229

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEML-ETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
              +L++ GR L A  L +     LE+  E   + Q  ++ +RYL          +L +Y
Sbjct: 230 TAEDLDRAGREL-AGDLPKEAAASLEIAQEALANGQLPDDCNRYLD--YLLSKSFSLLDY 286

Query: 465 IPEDSLLFVDESHVTIPQISGM 486
           +P   LL  ++  +    +  M
Sbjct: 287 LPAKGLLLFNDWQLIAESVKNM 308


>gi|47210542|emb|CAF93934.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1479

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 7/94 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +++R  R  + ++L+  +++ EG+DIP+C LV   D   E       S +Q+ GRA   V
Sbjct: 549 QVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE-----YRSYVQSKGRARAPV 603

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
           ++ ++L     TK+ +   D TT +  +++  NK
Sbjct: 604 SNYIMLADSERTKAFE--DDLTTYKAIEKILRNK 635


>gi|325474706|gb|EGC77892.1| ATP-dependent DNA helicase RecG [Treponema denticola F0402]
          Length = 678

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT----EYLYER------N 606
           P +   +   + E VY+ I     QG +           EDL+    E ++E       N
Sbjct: 461 PIITYVAGEDKAERVYNFIGQEILQGRQAYFVYPLIEENEDLSLKSAERMFEELKTGFPN 520

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
             +  +HS+V   E+  I+++ R GK ++LV  +++  G+D+P    + I  AD+ G   
Sbjct: 521 HSLALIHSKVAEEEQKRIMQEFRSGKLNILVATSVVEVGVDVPNATCMVIEHADRFGL-- 578

Query: 667 SKTSLIQTIGRAAR-NVNSKVIL-YADTITK 695
             ++L Q  GR  R ++ S   L Y   IT+
Sbjct: 579 --SALHQLRGRVGRGDLQSYCFLIYGKKITE 607


>gi|281427125|ref|NP_001163918.1| dicer 1, ribonuclease type III [Xenopus laevis]
 gi|261826170|gb|ACX94846.1| truncated double-stranded RNA-specific endoribonuclease type III
           [Xenopus laevis]
          Length = 1795

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           EV+  ++ E++R  R  + ++L+  +++ EG+DIP+C LV   D   E       S +Q+
Sbjct: 487 EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPSE-----YRSYVQS 541

Query: 675 IGRAARNVNSKVILYADT 692
            GR AR   S  I+ AD+
Sbjct: 542 KGR-ARAPISNYIMLADS 558


>gi|254578784|ref|XP_002495378.1| ZYRO0B09856p [Zygosaccharomyces rouxii]
 gi|238938268|emb|CAR26445.1| ZYRO0B09856p [Zygosaccharomyces rouxii]
          Length = 540

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 2/99 (2%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           Q  ++L+   TKR  +D+T+YL +       +H +    ER  ++ + + G+  ++V  +
Sbjct: 356 QDSKVLVFASTKRTCDDITQYLRQDGWSALAIHGDKDQRERDWVLEEFKNGRSPIMVATD 415

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +   G+D+   G+  +++ D  G +      I   GRA 
Sbjct: 416 VAARGIDVK--GINYVINYDMPGNIEDYVHRIGRTGRAG 452


>gi|299822345|ref|ZP_07054231.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
 gi|299815874|gb|EFI83112.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
          Length = 512

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV  ++   GLDI  
Sbjct: 251 TKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI-- 308

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R       I +           ++ETT++R 
Sbjct: 309 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRM 365

Query: 710 KQLE 713
           + L+
Sbjct: 366 EPLK 369


>gi|196250549|ref|ZP_03149239.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
 gi|196209898|gb|EDY04667.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
          Length = 467

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L  R      +H ++   +R+ ++R  + G  ++LV  ++   GLDI  
Sbjct: 249 TKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-AIDETTRRRE 709
            G+  + + D     +   S +  IGR  R   + V +   T  +  QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKM 363

Query: 710 KQLE 713
           ++++
Sbjct: 364 ERMK 367


>gi|186684085|ref|YP_001867281.1| excinuclease ABC subunit C [Nostoc punctiforme PCC 73102]
 gi|229558461|sp|B2J6D3|UVRC_NOSP7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|186466537|gb|ACC82338.1| excinuclease ABC, C subunit [Nostoc punctiforme PCC 73102]
          Length = 625

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 20/29 (68%), Positives = 24/29 (82%)

Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           L +QM+ AA+NLNFE AARIRD+I  LKS
Sbjct: 221 LTQQMNAAAENLNFESAARIRDQISGLKS 249


>gi|51244134|ref|YP_064018.1| transcription-repair coupling factor [Desulfotalea psychrophila
           LSv54]
 gi|50875171|emb|CAG35011.1| related to transcription-repair coupling factor [Desulfotalea
           psychrophila LSv54]
          Length = 1184

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 93/216 (43%), Gaps = 29/216 (13%)

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           I+V+S+  +   +   E  S  +  +  G+  ++  L++SL+   Y +  +    G F V
Sbjct: 103 IIVTSIEALLRRVIPKELLSARVELIMAGEDCDRDGLITSLLLLGYDKVSLTKNVGDFAV 162

Query: 332 CGDSIEIFP-------SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            G  I+I+P         L +   R+  FG+ +E +  F P++ +    +E   +     
Sbjct: 163 RGGIIDIYPPAFALENGQLHEGPLRLDFFGDTVESLRTFDPVSQRSTGKLEEAILLPTRD 222

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE----MLETTGSCQ 440
           ++     ++T+ K   +E+   L            Q    + +++ E    MLE   + Q
Sbjct: 223 FI-----IDTSAKKSLQEIGTAL------------QTRADKYSWNEELTQTMLEKINTGQ 265

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
            I     +L    PG+   +LF+++ ED+ + + +S
Sbjct: 266 GIAGIESFLPLFFPGKNLSSLFDFLTEDTTMVLMDS 301



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 8/99 (8%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V IR A   VED        AQ  + +  TVL ++  +   E L    +R+  ++     
Sbjct: 662 VAIRGAFKVVED-------GAQAAILVPTTVLAEQHLKTFRERLQNFPLRIECLNRFRTA 714

Query: 619 LERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
            E+ EI++DL  GK D+++G + LL + +   + GL+ I
Sbjct: 715 KEQREIVKDLAAGKIDIVIGTHRLLSKDVQFKDLGLLII 753


>gi|47224688|emb|CAG00282.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 497

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V  K + +DL+  +  + I V+ +H + +  +R E +R+ R GK  +LV  +L  
Sbjct: 334 KVLIFVGRKILVDDLSSDMCLQGISVQSLHGDREQCDREEALREFREGKVRILVATDLAS 393

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     F R+    +  +GR  R
Sbjct: 394 RGLDVLDITHVFNYD-----FPRNIEEYVHRVGRTGR 425


>gi|16760091|ref|NP_455708.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142138|ref|NP_805480.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213425039|ref|ZP_03357789.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|25290813|pir||AI0644 transcription-repair coupling factor (TrcF) STY1256 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502385|emb|CAD08340.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29137767|gb|AAO69329.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 1148

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 124/303 (40%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCQHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E   +
Sbjct: 130 --------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQ-PY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + +    
Sbjct: 181 RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWR-DTF 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E++++     A+ + Q+++         G+  +   Y + L      EP P LF Y P +
Sbjct: 236 EVKRD-----AEHIYQQVS--------KGTLPAGIEYWQPLFF---SEPLPPLFSYFPAN 279

Query: 469 SLL 471
           +L+
Sbjct: 280 TLV 282


>gi|134299934|ref|YP_001113430.1| ATP-dependent DNA helicase RecG [Desulfotomaculum reducens MI-1]
 gi|134052634|gb|ABO50605.1| ATP-dependent DNA helicase RecG [Desulfotomaculum reducens MI-1]
          Length = 685

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +  +  +H  +KT E+  ++ + R G  D+LV   ++  G+D+P    + I DA + G  
Sbjct: 502 DCSIGLLHGRMKTQEKELVMNEFRKGTIDLLVSTTVIEVGVDVPNATAMVIWDAQRFGL- 560

Query: 666 RSKTSLIQTIGRAARNVN-SKVILYADTITK 695
                L Q  GR  R  + S  IL  D  T+
Sbjct: 561 ---AQLHQLRGRVGRGSHQSYCILVGDPTTR 588


>gi|68487950|ref|XP_712192.1| hypothetical protein CaO19.13973 [Candida albicans SC5314]
 gi|68488947|ref|XP_711718.1| hypothetical protein CaO19.6652 [Candida albicans SC5314]
 gi|74656119|sp|Q59PR3|DBP8_CANAL RecName: Full=ATP-dependent RNA helicase DBP8
 gi|46433039|gb|EAK92496.1| hypothetical protein CaO19.6652 [Candida albicans SC5314]
 gi|46433563|gb|EAK92999.1| hypothetical protein CaO19.13973 [Candida albicans SC5314]
 gi|238880002|gb|EEQ43640.1| hypothetical protein CAWG_01884 [Candida albicans WO-1]
          Length = 440

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 9/88 (10%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE L   L + + RV  +HSE+   ER   +   + G   +L+  ++   GLDIP   LV
Sbjct: 266 AEVLRRMLRKLDFRVASLHSEMPQSERTNSLHRFKAGAARILIATDVASRGLDIPTVELV 325

Query: 655 AILD--ADKEGFLRSKTSLIQTIGRAAR 680
              D  AD + F       I  +GR AR
Sbjct: 326 INFDIPADPDDF-------IHRVGRTAR 346


>gi|323496023|ref|ZP_08101086.1| transcription-repair coupling factor [Vibrio sinaloensis DSM 21326]
 gi|323318914|gb|EGA71862.1| transcription-repair coupling factor [Vibrio sinaloensis DSM 21326]
          Length = 1154

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 124/307 (40%), Gaps = 39/307 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+     +A++        ++  P+   A +L  E + F      E  VS +  ++  
Sbjct: 24  LQGASLAIAIAELANQHSSHTLLAVPDPQTALKLLQEIEQF-----TEQDVSLFPDWETL 78

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMI 294
            Y    D +   +  I+++I ++    T++       I +  VS +    S   Y  Q  
Sbjct: 79  PY----DNFSPHQEIISDRIAKLYQLPTQT-----SGITIVPVSTLLQRQSPRDYLMQHT 129

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K GD     +L   L K  Y+  D     G +   G  +++FP    D  +R+  F 
Sbjct: 130 LMVKAGDLYSLDKLRLQLEKSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDFFD 188

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P   + I +V  I++     +    PT  TA++  +   + R        
Sbjct: 189 DEIDTIRTFDPENQRSIDDVNEIRLLPAHEF----PTTETAIEDFRIRWRQR-------- 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFV 473
              EA+R  + +     M  + G+  +   Y + L      E   TLF+YI EDS L++V
Sbjct: 237 --FEARREPESVY----MQVSKGTWPAGIEYWQPLF----FEQTETLFDYIAEDSQLVYV 286

Query: 474 DESHVTI 480
            +    I
Sbjct: 287 GDIEAAI 293


>gi|296116226|ref|ZP_06834844.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977332|gb|EFG84092.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 406

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+   T+R A+DL   L  R +    MH E     R   +RD R  K  VL+  +++ 
Sbjct: 279 RVLIFTETRRQADDLANAL-GREMTCGVMHGEHTQARRERTLRDFRDHKLHVLIATDVMA 337

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+ +  LV   D       R   + +  IGR AR
Sbjct: 338 RGIDVEDVMLVVNYD-----IPRQAEAYVHRIGRTAR 369


>gi|255522527|ref|ZP_05389764.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J1-175]
          Length = 244

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 69  MHGKLLPADKEQIMRDFNNKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 124

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  + S  IL AD  T+
Sbjct: 125 HQLRGRVGRGADQSYCILIADPKTE 149


>gi|254780028|ref|YP_003058135.1| ATP-dependent DNA helicase RecG [Helicobacter pylori B38]
 gi|254001941|emb|CAX30198.1| ATP-dependent DNA helicase RecG [Helicobacter pylori B38]
          Length = 623

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 130 SINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFT-MAK 187
           +  N+S+ +  F     +  + DQ  AI ++   + S    + L++G  G GKT   +A 
Sbjct: 213 ACTNNSERLDNFIASLPFKLTRDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILAS 272

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           ++ A     ++MAP  ILA QLY+E   F P
Sbjct: 273 MVLAYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 518

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L ++      +H ++   +R  ++R  R G  DVLV  ++   GLD+  
Sbjct: 249 TKRRVDELSEALQKQGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDV-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  +++ D     +   S +  IGR  R
Sbjct: 307 SGVTHVVNFD---LPQDPESYVHRIGRTGR 333


>gi|242371572|ref|ZP_04817146.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
 gi|242350724|gb|EES42325.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
          Length = 525

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+LV  ++   GLDI  
Sbjct: 265 TKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 322

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 323 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 352


>gi|242241346|ref|YP_002989527.1| ATP-dependent DNA helicase RecG [Dickeya dadantii Ech703]
 gi|242133403|gb|ACS87705.1| ATP-dependent DNA helicase RecG [Dickeya dadantii Ech703]
          Length = 693

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++ +  +H  +KT E+  ++   + G+  +LV   ++  G+D+P   L+ I + ++ G  
Sbjct: 517 DLTIGLVHGRMKTQEKQAVMEAFKTGRLHLLVATTVIEVGVDVPNASLMIIENPERLGL- 575

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITKSIQL 699
                L Q  GR  R   +   V+LY   ++K+ Q+
Sbjct: 576 ---AQLHQLRGRVGRGAVASHCVLLYKSPLSKTAQM 608


>gi|239999138|ref|ZP_04719062.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae 35/02]
 gi|268594974|ref|ZP_06129141.1| transcription-repair coupling factor [Neisseria gonorrhoeae 35/02]
 gi|268548363|gb|EEZ43781.1| transcription-repair coupling factor [Neisseria gonorrhoeae 35/02]
 gi|317164430|gb|ADV07971.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 1234

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 17/199 (8%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ +    ++  A   
Sbjct: 46  ALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ----IKSGAA-- 98

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
                D + V   + +  +  V   +     LK G +++   L + LV   Y      + 
Sbjct: 99  -----DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVA 153

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
            G F V G  +++FP   E   +R+ +F ++I+ I  F   T + I  V  I++     +
Sbjct: 154 AGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDGIKTFDTDTQRTISPVSEIRLLPAHEF 212

Query: 386 VTPRPTLNTAMKYIKEELK 404
               PT + A K  +   +
Sbjct: 213 ----PTDSEAQKIFRSRFR 227



 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 923  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 979

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 980  -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1015


>gi|303271977|ref|XP_003055350.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545]
 gi|226463324|gb|EEH60602.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545]
          Length = 1468

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 8/103 (7%)

Query: 593  RMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            + AE+  + L E+   V +  +H +  + E+   ++D + GK  VLV   ++  G+D+P 
Sbjct: 1271 KSAEEEHKRLVEKYPEVTFGILHGKQSSDEKATALKDFKDGKTQVLVATTVIEVGVDVPN 1330

Query: 651  CGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYAD 691
              L+ I DAD+ G  +    L Q  GR  R    +S  +L  D
Sbjct: 1331 ASLIIIEDADRFGVAQ----LHQMRGRVGRGKTASSCFLLLGD 1369


>gi|194068383|dbj|BAG55012.1| vasa [Saccostrea kegaki]
          Length = 422

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+ V  KR A+ L  YL +       +H +    ER E +RD + GK  VL+  ++  
Sbjct: 227 KTLVFVEQKRNADFLASYLSQNGFPTTSIHGDRLQAEREEALRDFKTGKAPVLIATSVAA 286

Query: 644 EGLDIP 649
            GLDIP
Sbjct: 287 RGLDIP 292


>gi|270016294|gb|EFA12740.1| hypothetical protein TcasGA2_TC002367 [Tribolium castaneum]
          Length = 668

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I++ V TK+  +D+T+ +         +H +    ER  ++ + R GK  +LV  ++  
Sbjct: 325 KIIVFVETKKKVDDITKCIRREGYAAISIHGDKSQPERDYVLSEFRTGKSSILVATDVAA 384

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     +  S    +  IGR  R
Sbjct: 385 RGLDVEDVKYVINFD-----YPNSSEDYVHRIGRTGR 416


>gi|257457590|ref|ZP_05622757.1| ATP-dependent DNA helicase RecG [Treponema vincentii ATCC 35580]
 gi|257444976|gb|EEV20052.1| ATP-dependent DNA helicase RecG [Treponema vincentii ATCC 35580]
          Length = 641

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 10/112 (8%)

Query: 590 LTKRMAEDLTEYLYERNI---RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L+ + AED+   L  R+    R+  +HS+V   E   I+++ R G   +LV  +++  G+
Sbjct: 455 LSLKSAEDMFAEL-SRDFPHHRLALLHSKVPEDEARAIMQEFRAGAIHILVATSVIEVGV 513

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKS 696
           D+P    + I  AD+ G     ++L Q  GR  R  +     +LY   IT++
Sbjct: 514 DVPNATCMVIEHADRFGL----SALHQLRGRIGRGSDQAYCFLLYGKNITET 561


>gi|240016396|ref|ZP_04722936.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae FA6140]
 gi|240125910|ref|ZP_04738796.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae SK-92-679]
          Length = 1234

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 17/199 (8%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ +    ++  A   
Sbjct: 46  ALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ----IKSGAA-- 98

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
                D + V   + +  +  V   +     LK G +++   L + LV   Y      + 
Sbjct: 99  -----DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVA 153

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
            G F V G  +++FP   E   +R+ +F ++I+ I  F   T + I  V  I++     +
Sbjct: 154 AGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDGIKTFDTDTQRTISPVSEIRLLPAHEF 212

Query: 386 VTPRPTLNTAMKYIKEELK 404
               PT + A K  +   +
Sbjct: 213 ----PTDSEAQKIFRSRFR 227



 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 923  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 979

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 980  -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1015


>gi|242310019|ref|ZP_04809174.1| ATP-dependent DNA helicase [Helicobacter pullorum MIT 98-5489]
 gi|239523316|gb|EEQ63182.1| ATP-dependent DNA helicase [Helicobacter pullorum MIT 98-5489]
          Length = 602

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 130 SINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFTM-AK 187
           SI   + D   +Q    +  +  Q  AI ++ K + S +  + +++G  G GKT  + A 
Sbjct: 208 SICPLNGDFKKWQRNLPFALTKGQQMAILEIQKDLDSNKAARRVIVGDVGCGKTMVIFAS 267

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           V+ A  + +I+M P  ILA Q+Y E + F P +
Sbjct: 268 VLMAYPKKSILMVPTSILAKQIYQESQKFLPKH 300


>gi|224109196|ref|XP_002315119.1| dicer-like protein [Populus trichocarpa]
 gi|222864159|gb|EEF01290.1| dicer-like protein [Populus trichocarpa]
          Length = 1408

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI+ + R G  +++V  ++L EGLD+  C LV   D        S +S IQ+ GR AR  
Sbjct: 439 EIVEEFRKGMVNIIVATSILEEGLDVQSCNLVIRFDPPS-----SVSSFIQSRGR-ARMQ 492

Query: 683 NSKVILYADT 692
           NS  +L   T
Sbjct: 493 NSDYLLMVKT 502


>gi|189501723|ref|YP_001957440.1| hypothetical protein Aasi_0272 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497164|gb|ACE05711.1| hypothetical protein Aasi_0272 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 1123

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 23/224 (10%)

Query: 157 IAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           I +LL  I +S      L G+ GS      A + +      I +  +K  AA LY++  N
Sbjct: 16  IKELLNNICNSSHSFIRLKGLAGSLPAILGAALHQLNNFTQIFILQDKEAAAYLYTDLLN 75

Query: 216 FF-PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC-- 272
              P   V Y              P  +   + ++ ++   + MR+   + L + N    
Sbjct: 76  LLGPQKVVLY--------------PAIEYQTDSKAFLDTAANLMRNEILQQLRQSNKVSK 121

Query: 273 -IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            IV    + +  + S +S ++    ++  + +   E + +L+ + +++ D     G F +
Sbjct: 122 IIVTYPEAIVTKVISQDSLTKNSWSIQPKEKLVLSEFVDTLIDKGFEKVDFVYEAGQFAI 181

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP---LTGQKIR 372
            G  I+IF S+   + +RV + GN+IE I  F P   L+ +K++
Sbjct: 182 RGGIIDIF-SYGSQLPYRVELLGNEIESIRLFNPSNQLSTEKVK 224



 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 34/148 (22%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERI-----EIIRDLRLG--------------- 631
           K++ +D   Y  +R  +V ++H+ +  ++ +     +++ + R+G               
Sbjct: 757 KKIVQDAIHYEVQRGGQVFFVHNRINNIQEVANMLYKLVPEYRIGIAHGQMDGDQLEKKM 816

Query: 632 ------KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
                  +D+LV  N++  GLDIP    + I D+   G     + L Q  GR  R+ N K
Sbjct: 817 LTFIAGGYDILVSTNIIESGLDIPNANTIIINDSHMFGL----SDLHQMRGRVGRS-NKK 871

Query: 686 VILYADTITKSIQLAIDETTRRREKQLE 713
              Y      S   ++ E  R+R   LE
Sbjct: 872 AFCYLIAPPNS---SLTEEARKRLSTLE 896


>gi|154300880|ref|XP_001550854.1| hypothetical protein BC1G_10578 [Botryotinia fuckeliana B05.10]
 gi|160380613|sp|A6SCT6|DBP3_BOTFB RecName: Full=ATP-dependent RNA helicase dbp3
 gi|150856326|gb|EDN31518.1| hypothetical protein BC1G_10578 [Botryotinia fuckeliana B05.10]
          Length = 592

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 46/96 (47%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE R    ++  +  +    +Q+  RIL+  L K+ A  +  ++ ++  RV  +H ++  
Sbjct: 405 VEPRDKEYRLMQLLKQYQSGSQKDDRILVFCLYKKEATRVESFIRQKGFRVAGIHGDLSQ 464

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            +R   +   + G   VLV  ++   GLDIP   LV
Sbjct: 465 EQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLV 500


>gi|74152734|dbj|BAE42635.1| unnamed protein product [Mus musculus]
          Length = 929

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   E  ++I D +     VLV  ++   
Sbjct: 501 VLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSEGNKVISDFKKKDIPVLVATDVAAR 560

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 561 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 612


>gi|70725957|ref|YP_252871.1| hypothetical protein SH0956 [Staphylococcus haemolyticus JCSC1435]
 gi|123660708|sp|Q4L7W0|Y956_STAHJ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SH0956
 gi|68446681|dbj|BAE04265.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 503

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 336


>gi|13518015|ref|NP_077726.1| probable ATP-dependent RNA helicase DDX4 isoform 1 [Homo sapiens]
 gi|20138033|sp|Q9NQI0|DDX4_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog
 gi|8102021|gb|AAF72705.1| VASA protein [Homo sapiens]
 gi|56789238|gb|AAH88362.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Homo sapiens]
 gi|119575324|gb|EAW54929.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Homo sapiens]
 gi|158258266|dbj|BAF85106.1| unnamed protein product [Homo sapiens]
          Length = 724

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 542 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAA 601

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 602 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 645


>gi|71019993|ref|XP_760227.1| hypothetical protein UM04080.1 [Ustilago maydis 521]
 gi|74701057|sp|Q4P733|DED1_USTMA RecName: Full=ATP-dependent RNA helicase DED1
 gi|46099796|gb|EAK85029.1| hypothetical protein UM04080.1 [Ustilago maydis 521]
          Length = 672

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 5/102 (4%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G   L+ V TKRMA+ L+++L    I    +H +    ER   +   R GK  ++V   +
Sbjct: 450 GGLTLIFVETKRMADMLSDFLLRSKIGATSIHGDRTQRERERALELFRSGKTPIMVATAV 509

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
              GLDIP    V   D   +         +  IGR  R  N
Sbjct: 510 AARGLDIPNVTHVVNYDLPSD-----VDDYVHRIGRTGRAGN 546


>gi|332882147|ref|ZP_08449781.1| primosomal protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679898|gb|EGJ52861.1| primosomal protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 825

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 8/73 (10%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           I+ D + GK DVL+G  ++ +GLD     +V IL+AD          F R+   + Q  G
Sbjct: 620 ILEDFQSGKTDVLIGTQMVTKGLDFERVSVVGILNADAMLNIPDFRSFERAFQLMAQVAG 679

Query: 677 RAA-RNVNSKVIL 688
           RA  R+   +VIL
Sbjct: 680 RAGRRSRQGRVIL 692


>gi|328697410|ref|XP_001948642.2| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 718

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 6/128 (4%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           + ++ + G + ++ V  K+  ++LT  +         MH +    +R  ++ + R GK  
Sbjct: 345 MKISNEPGFKAIIFVEKKKKVDELTRQIKNEGYIATSMHGDKSQQDRDHVLNEFRNGKSP 404

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   GLD+ +   V   D     +  S    +  IGR  R+  +  I Y    T
Sbjct: 405 ILVATDVAARGLDVDDVKYVINFD-----YPNSSEDYVHRIGRTGRSKQAG-IAYTFFST 458

Query: 695 KSIQLAID 702
            +++ A D
Sbjct: 459 NNMRQAKD 466


>gi|312221692|emb|CBY01632.1| hypothetical protein [Leptosphaeria maculans]
          Length = 308

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R
Sbjct: 138 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQRERDSIMQDFR 192

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
                VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 193 QANSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 238


>gi|294625117|ref|ZP_06703762.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292600581|gb|EFF44673.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 648

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 267 MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 326

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA RN ++  IL+     K +  +I+
Sbjct: 327 GLDVERISHVLNYDIPYDTESYVHR----IGRTGRAGRNGDA--ILFVTPREKGMLRSIE 380

Query: 703 ETTRRREKQLEHNKKHNIN 721
             TR+  ++++      +N
Sbjct: 381 RATRQPIEEMQLPSVDAVN 399


>gi|268684509|ref|ZP_06151371.1| transcription-repair coupling factor [Neisseria gonorrhoeae
           SK-92-679]
 gi|268624793|gb|EEZ57193.1| transcription-repair coupling factor [Neisseria gonorrhoeae
           SK-92-679]
          Length = 1241

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 17/199 (8%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ +    ++  A   
Sbjct: 53  ALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ----IKSGAA-- 105

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
                D + V   + +  +  V   +     LK G +++   L + LV   Y      + 
Sbjct: 106 -----DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVA 160

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
            G F V G  +++FP   E   +R+ +F ++I+ I  F   T + I  V  I++     +
Sbjct: 161 AGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDGIKTFDTDTQRTISPVSEIRLLPAHEF 219

Query: 386 VTPRPTLNTAMKYIKEELK 404
               PT + A K  +   +
Sbjct: 220 ----PTDSEAQKIFRSRFR 234



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 930  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 986

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 987  -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1022


>gi|217076630|ref|YP_002334346.1| primosomal protein N' [Thermosipho africanus TCF52B]
 gi|217036483|gb|ACJ75005.1| primosomal protein N' [Thermosipho africanus TCF52B]
          Length = 723

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 27/115 (23%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL----------GKFDVLVGIN 640
           T+R+ +++      RNI      S V T    E+I+D RL          G+ ++LVG  
Sbjct: 492 TERIEKEIQNLFPARNI------SRVDT----EVIQDYRLFQRILKGLYNGELNILVGTK 541

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTS-------LIQTIGRAARNVNSKVIL 688
           ++ +GLD+P   L+ ++D D    L    S       ++Q +GR+ R    K ++
Sbjct: 542 MITKGLDVPTVNLIGVIDIDAIQSLPDYNSAINLFRLIVQVVGRSGRKEKGKALI 596



 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           + S+ KV LL GVTGSGKT     VIE +    + + P   L  Q  S   + FP   VE
Sbjct: 223 VKSKSKV-LLHGVTGSGKTEVYLSVIERLNTKVLYLVPEVSLIEQTLSRIYSRFPDLKVE 281

Query: 224 YFVSY 228
            + SY
Sbjct: 282 VYHSY 286


>gi|206889345|ref|YP_002248930.1| transcription-repair coupling factor [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741283|gb|ACI20340.1| transcription-repair coupling factor [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 1042

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 29/183 (15%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV   N+  AA+LY+ FK F          S+++      ++P   T            +
Sbjct: 52  IVFEENEDQAAKLYAAFKTF---------SSFFNTTDEIVFLPSKGT------------E 90

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           RM  +  + L ERN  I+ +  S       +  + + I  +K G ++E++ L  +L+   
Sbjct: 91  RM-IAIFKILNERNKKIITTVDSA-----KIPPHIETI-NIKKGGTIEREFLAKNLINLG 143

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y + ++    G F   G   +I+    E+   R+  FG++IEEI  FYP T +  ++   
Sbjct: 144 YSKVELVTQEGEFSEHGWVFDIWGIG-EEYPARIEFFGDEIEEIKLFYPDTQRSFKDKNE 202

Query: 377 IKI 379
           I I
Sbjct: 203 IWI 205


>gi|138893877|ref|YP_001124330.1| DEAD-box ATP dependent DNA helicase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265390|gb|ABO65585.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus
           thermodenitrificans NG80-2]
          Length = 467

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L  R      +H ++   +R+ ++R  + G  ++LV  ++   GLDI  
Sbjct: 249 TKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-AIDETTRRRE 709
            G+  + + D     +   S +  IGR  R   + V +   T  +  QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKM 363

Query: 710 KQLE 713
           ++++
Sbjct: 364 ERMK 367


>gi|332821345|ref|XP_517757.3| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 4 [Pan
           troglodytes]
          Length = 724

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 542 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAA 601

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 602 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 645


>gi|332669674|ref|YP_004452682.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332338712|gb|AEE45295.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
          Length = 590

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL I+    TKR A  + + L ER      +H ++    R + +R  R GK DVLV
Sbjct: 295 ANGRGLTIVF-ARTKRTAAKVADELVERGFAAGALHGDLGQGAREQALRAFRHGKVDVLV 353

Query: 638 GINLLREGLDI 648
             ++   G+D+
Sbjct: 354 ATDVAARGIDV 364


>gi|326437446|gb|EGD83016.1| hypothetical protein PTSG_03652 [Salpingoeca sp. ATCC 50818]
          Length = 837

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           VY+E    A+     L+ V      E++     E  +  R +  + +   R  I+ D R 
Sbjct: 486 VYEEWKRLAEGRKSTLVFVSKIVHLENIQNVFRENGVDARQLTGQTRLDLRDRILSDFRA 545

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            KF VL+ + +L EG D+P    + I  A + G   S T L Q +GR  R
Sbjct: 546 RKFPVLINVGVLTEGTDLPCVDCIVI--ARRVG---SHTLLAQMVGRGLR 590


>gi|319937738|ref|ZP_08012141.1| ATP-dependent RNA helicase dbpA [Coprobacillus sp. 29_1]
 gi|319807173|gb|EFW03787.1| ATP-dependent RNA helicase dbpA [Coprobacillus sp. 29_1]
          Length = 479

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+    ++ + LY+  I V  +H  +   +R+E + D RLGK   LV  ++   G+DI  
Sbjct: 248 TQERVNEVYDMLYKNGISVHKIHGGMLQTDRLENMNDFRLGKVQFLVATDVAARGIDIEN 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              V   D  +E       + I  IGR AR
Sbjct: 308 ISHVINYDLPREA-----QNYIHRIGRTAR 332


>gi|255950086|ref|XP_002565810.1| Pc22g19070 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592827|emb|CAP99195.1| Pc22g19070 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 682

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L  +      +H +    ER   +   R G+  +LV   +   G
Sbjct: 466 LIFVETKRMADSLSDFLINQRFPATAIHGDRTQRERERALELFRNGRCPILVATAVAARG 525

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 526 LDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNTGI 561


>gi|220934531|ref|YP_002513430.1| transcription-repair coupling factor [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995841|gb|ACL72443.1| transcription-repair coupling factor [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 1157

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 48/232 (20%), Positives = 97/232 (41%), Gaps = 19/232 (8%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G+ +   MA+ +   +   +V+ P+   A  L  E + F   +++           P   
Sbjct: 27  GAARGLAMARALAGHKGLGVVITPDTREAETLARELEFFLGDDSL-----------PVLT 75

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ-MIVQ 296
           +P  +T      S +E I   R      L + +  I+V  V+ +    +  ++ Q  ++ 
Sbjct: 76  LPDWETLPYDLFSPHEDIISQRLETLYRLPDLSRGILVVPVNTLMQRIAPRAWLQGRVLM 135

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDVAWRVSMFGN 355
           L  GD +++  L  +L +  Y      +  G F V G  I++FP   LE   +RV +  +
Sbjct: 136 LANGDRLDRDALRRNLEQAGYHCVSQVMEHGEFAVRGSLIDLFPMGSLE--PYRVDLLDD 193

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
           +IE I  F P + + + +V  +++     +    P    A+K  ++  + R 
Sbjct: 194 EIESIRSFDPESQRSLDSVNAVRLLPAHEF----PMDEAAIKGFRQRYRTRF 241


>gi|156064101|ref|XP_001597972.1| hypothetical protein SS1G_00058 [Sclerotinia sclerotiorum 1980]
 gi|160380631|sp|A7E436|DBP8_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp8
 gi|154690920|gb|EDN90658.1| hypothetical protein SS1G_00058 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 540

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A+ LT  L     RV  +HS++   +RI+ +   R     +LV  ++   GLDIPE GLV
Sbjct: 379 ADYLTHLLRLLEHRVTALHSKLPQRQRIDNLGRFRASAARILVATDVAARGLDIPEVGLV 438

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
              D       R     I  +GR AR     + + +       + LAI+   +R  +Q+E
Sbjct: 439 INYDVP-----RDPDDYIHRVGRTARAGRKGEAVTFVGQRDVQLILAIE---KRVGRQME 490

Query: 714 HNKKHNIN 721
              +  +N
Sbjct: 491 AWTEEGVN 498


>gi|74207549|dbj|BAE40025.1| unnamed protein product [Mus musculus]
          Length = 622

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 435 VLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 495 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 543

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 544 VLMDLKALLLEAKQKVPP 561


>gi|47211987|emb|CAF95263.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 514

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TK+  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 303 IMAEKENKTIIFVETKKRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLAEFRSGKAPIL 362

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N
Sbjct: 363 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN 404


>gi|268536796|ref|XP_002633533.1| C. briggsae CBR-DRH-1 protein [Caenorhabditis briggsae]
          Length = 1043

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 14/120 (11%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++E +R    G+  VLV  ++  EGLD+ EC LV      K  +  ++ + +Q  GR  
Sbjct: 760 KQMEKLRKFATGEIRVLVATSVAEEGLDVAECNLVI-----KYNYATNEIAHVQRRGR-G 813

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK---KHNINPQSVKEKIMEVIDPI 736
           R +NS  +L    +T SI L  D+    R+K+   N+   K   NP + ++ +M  I  I
Sbjct: 814 RAMNSTCVL----VTNSIPLR-DQEGANRDKENMMNQALLKITTNPGAFRDAVMAEIGNI 868


>gi|172056656|ref|YP_001813116.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171989177|gb|ACB60099.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 530

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++TE L +R      +H ++   +R ++IR  + G  D+LV  ++   GLDI  
Sbjct: 249 TKKRVDEMTEGLIQRGYTADGLHGDLTQAKRDQVIRRFKKGTIDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 307 SGVTHVYNFD---VPQDPESYVHRIGRTGR 333


>gi|71026577|ref|XP_762954.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68349906|gb|EAN30671.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 707

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 9/123 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+    K  A+ LT  L  R  +   +H      +R  I+   R G  +VLV  ++  
Sbjct: 566 KVLIFSDLKSFADQLTSALRYRRFKSASLHGNKTQAQRERILNMFRSGDVNVLVATDVAA 625

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILY--ADTITKS-IQL 699
            GLDI +   V  LD  K     S    I  IGR  R N   + +LY   DT+T + ++ 
Sbjct: 626 RGLDIKDIDYVINLDVPK-----SLLDYIHRIGRTGRGNSKGESLLYFPIDTLTPAKVKF 680

Query: 700 AID 702
           A D
Sbjct: 681 AQD 683


>gi|290957574|ref|YP_003488756.1| helicase [Streptomyces scabiei 87.22]
 gi|260647100|emb|CBG70199.1| putative helicase [Streptomyces scabiei 87.22]
          Length = 865

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +GL +++   TKR A DL + L +R      +H ++    R + +R  R GK DVLV  +
Sbjct: 284 RGL-VMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTD 342

Query: 641 LLREGLDI 648
           +   G+D+
Sbjct: 343 VAARGIDV 350


>gi|259489484|tpe|CBF89793.1| TPA: DNA helicase (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 971

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 15/119 (12%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYL--YERNIR--VRYMHSEVKTLE------RIEIIRDLR 629
           Q   R+++ V  +  AE++T  L  YE  IR  V    S  K  E      +++II+  +
Sbjct: 529 QTATRVMIFVHFRDSAEEVTRVLKRYEPMIRPHVFVGQSSAKGSEGMGQKTQLDIIQKFK 588

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G ++ +V  ++  EGLDI E  L+   D+       S   ++Q +GR  R     ++L
Sbjct: 589 KGTYNTIVATSIGEEGLDIGEVDLIVCYDSSA-----SPIRMLQRMGRTGRKRAGNIVL 642


>gi|226228176|ref|YP_002762282.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
 gi|226091367|dbj|BAH39812.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
          Length = 374

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 2/109 (1%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+   TK  A+ +   L +  I    MH++    ERI+ + D + GK  VLV  ++ + 
Sbjct: 242 VLVFTRTKSGADRVVSDLAQAKIHAGAMHADKSQRERIQALEDFKSGKLRVLVATDIAQR 301

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           GLDI   G+  +++ D           I   GRAA   ++   + A+ I
Sbjct: 302 GLDI--SGITHVINFDVPQQPEDYVHRIGRTGRAASTGDAYTFMSAEEI 348


>gi|195436432|ref|XP_002066172.1| GK22219 [Drosophila willistoni]
 gi|194162257|gb|EDW77158.1| GK22219 [Drosophila willistoni]
          Length = 1284

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++ I+ D R G  ++LV  ++  EG+D+ E  ++   D        + T  +Q IGR  
Sbjct: 490 QQLAIMADFRAGTSNILVATSIGEEGIDVGEVEMIVCFDICSS----NPTRFVQRIGRTG 545

Query: 680 RNVNSKVILYA 690
           R  N +V++ A
Sbjct: 546 RKKNGEVVMLA 556


>gi|78048530|ref|YP_364705.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036960|emb|CAJ24661.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 648

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 267 MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 326

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA RN ++  IL+     K +  +I+
Sbjct: 327 GLDVERISHVLNYDIPYDTESYVHR----IGRTGRAGRNGDA--ILFVTPREKGMLRSIE 380

Query: 703 ETTRRREKQLEHNKKHNIN 721
             TR+  ++++      +N
Sbjct: 381 RATRQPIEEMQLPSVDAVN 399


>gi|152978695|ref|YP_001344324.1| ATP-dependent DNA helicase RecG [Actinobacillus succinogenes 130Z]
 gi|150840418|gb|ABR74389.1| ATP-dependent DNA helicase RecG [Actinobacillus succinogenes 130Z]
          Length = 693

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H  +K  E+ EI+   +  + D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 517 HLRIGLVHGRMKPAEKQEIMARFKAAELDLLVATTVIEVGVDVPNASLMIIENAERLGL- 575

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITK 695
              + L Q  GR  R   +   V++Y   + K
Sbjct: 576 ---SQLHQLRGRVGRGSTASFCVLMYKPPLGK 604


>gi|119718031|ref|YP_924996.1| type III restriction enzyme, res subunit [Nocardioides sp. JS614]
 gi|119538692|gb|ABL83309.1| type III restriction enzyme, res subunit [Nocardioides sp. JS614]
          Length = 1033

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            E     R + + DLR  + +V+  ++L  EGLDIPE   V  L   +     S T  +Q
Sbjct: 584 GETAPTARQQALSDLRGRRVNVVFAVDLFNEGLDIPEIDTVLFLRPTE-----SATVFLQ 638

Query: 674 TIGRAARNVNSKVILYA 690
             GR  R    K +L A
Sbjct: 639 QFGRGLRRTTDKAVLTA 655


>gi|319939673|ref|ZP_08014032.1| primosome assembly protein PriA [Streptococcus anginosus 1_2_62CV]
 gi|319811262|gb|EFW07568.1| primosome assembly protein PriA [Streptococcus anginosus 1_2_62CV]
          Length = 793

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+++   G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 586 QILKEFGEGRADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVA 645

Query: 676 GRAAR 680
           GRA R
Sbjct: 646 GRAGR 650


>gi|302521780|ref|ZP_07274122.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp.
           SPB78]
 gi|302430675|gb|EFL02491.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp.
           SPB78]
          Length = 485

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL +++   TKR A D++E L  R      +H ++    R + +R  R GK DVLV
Sbjct: 260 AEGRGL-VMIFCRTKRTAADISEQLQRRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLV 318

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             ++   G+D+   G+  +++       ++    I   GRA R+  +  ++  D I +
Sbjct: 319 CTDVAARGIDVE--GVTHVINYQTPEDEKTYLHRIGRTGRAGRSGTAVTLVDWDDIPR 374


>gi|296234835|ref|XP_002762632.1| PREDICTED: ATP-dependent RNA helicase DDX3Y [Callithrix jacchus]
          Length = 656

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 9/101 (8%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           IL+ V+TK+  + L E+LY        +H +     R E +R  R GK  +LV   +   
Sbjct: 440 ILVFVVTKKEVDSLEEFLYHEGYACTSIHGDRSQRAREEALRQFRSGKSPILVATAVAAR 499

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVN 683
           GLDI     V   D  +D E +       +  IGR  R  N
Sbjct: 500 GLDISNVRHVINFDLPSDIEEY-------VHRIGRTGRAGN 533


>gi|312140644|ref|YP_004007980.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|325675727|ref|ZP_08155411.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
 gi|311889983|emb|CBH49301.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
 gi|325553698|gb|EGD23376.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
          Length = 545

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ + + L ER   V  +H ++  + R + +   R GK DVLV  ++   G+DI
Sbjct: 302 TKRTAQKVADDLNERGFNVGAVHGDLGQIAREKALAGFRSGKVDVLVATDVAARGIDI 359


>gi|268599202|ref|ZP_06133369.1| transcription-repair coupling factor [Neisseria gonorrhoeae MS11]
 gi|268603888|ref|ZP_06138055.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID1]
 gi|268682351|ref|ZP_06149213.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID332]
 gi|268583333|gb|EEZ48009.1| transcription-repair coupling factor [Neisseria gonorrhoeae MS11]
 gi|268588019|gb|EEZ52695.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID1]
 gi|268622635|gb|EEZ55035.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID332]
          Length = 1241

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 17/199 (8%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ +    ++  A   
Sbjct: 53  ALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ----IKSGAA-- 105

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
                D + V   + +  +  V   +     LK G +++   L + LV   Y      + 
Sbjct: 106 -----DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVA 160

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
            G F V G  +++FP   E   +R+ +F ++I+ I  F   T + I  V  I++     +
Sbjct: 161 AGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDGIKTFDTDTQRTISPVSEIRLLPAHEF 219

Query: 386 VTPRPTLNTAMKYIKEELK 404
               PT + A K  +   +
Sbjct: 220 ----PTDSEAQKIFRSRFR 234



 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 930  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 986

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 987  -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1022


>gi|255326571|ref|ZP_05367648.1| ATP-dependent DNA helicase RecG [Rothia mucilaginosa ATCC 25296]
 gi|255296311|gb|EET75651.1| ATP-dependent DNA helicase RecG [Rothia mucilaginosa ATCC 25296]
          Length = 1171

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 606  NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
             +R+  +H  +   E+  ++     G+ D+L+   ++  G+++P   L+ I+DAD+ G  
Sbjct: 987  GVRIGTLHGRMDPAEKTSVMTAFERGEIDLLISTTVIEVGVNVPNATLMIIMDADRFGI- 1045

Query: 666  RSKTSLIQTIGRAARN 681
               + L Q  GR  R 
Sbjct: 1046 ---SGLHQLRGRVGRG 1058


>gi|295402561|ref|ZP_06812510.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112527|ref|YP_003990843.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
 gi|294975409|gb|EFG51038.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217628|gb|ADP76232.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
          Length = 465

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L  R      +H ++   +R+ ++R  + G  ++LV  ++   GLDI  
Sbjct: 249 TKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-AIDETTRRRE 709
            G+  + + D     +   S +  IGR  R   + V +   T  +  QL  I+ TT+R+ 
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHNIERTTKRKM 363

Query: 710 KQLE 713
           ++++
Sbjct: 364 ERMK 367


>gi|255009347|ref|ZP_05281473.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313147103|ref|ZP_07809296.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313135870|gb|EFR53230.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 418

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 9/107 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K   +++ + L    + V  MHS+++  +R  I+ + + G+ ++LV  +++ 
Sbjct: 246 RVIIFASSKLKVKEVAKALKMMKLNVGEMHSDLEQAQREFIMHEFKSGRINILVATDIVS 305

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+DI +  LV   D   D E +       +  IGR AR  N  V L
Sbjct: 306 RGIDIDDIRLVINFDVPHDSEDY-------VHRIGRTARANNDGVAL 345


>gi|224825918|ref|ZP_03699022.1| DEAD/H associated domain protein [Lutiella nitroferrum 2002]
 gi|224602142|gb|EEG08321.1| DEAD/H associated domain protein [Lutiella nitroferrum 2002]
          Length = 1444

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSE 615
           P+E   +    + VYD +     +    L+ V T+R+AE +T +L ER     V   H  
Sbjct: 250 PLEAVMSGEVWQQVYDRLATLIDEHRTTLVFVNTRRLAERVTRHLSERLGETLVAAHHGS 309

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R++  + L+ G+   LV    L  G+DI +  LV  L     G  RS ++ +Q +
Sbjct: 310 LAREARLDAEQRLKRGELRALVATASLELGIDIGDVDLVCQL-----GSPRSISAFLQRV 364

Query: 676 GRAARNVNS 684
           GR+   V+ 
Sbjct: 365 GRSGHAVSG 373


>gi|255571736|ref|XP_002526811.1| protein with unknown function [Ricinus communis]
 gi|223533815|gb|EEF35546.1| protein with unknown function [Ricinus communis]
          Length = 1351

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++   R GK++V+V  ++  EGLDI E  LV   DA+      S   +IQ +GR  R  +
Sbjct: 516 VLEKFRAGKYNVIVATSIGEEGLDIMEVDLVICFDANV-----SPLRMIQRMGRTGRKHD 570

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHN 715
            ++        + ++L+I++   R +K  + N
Sbjct: 571 GRIPHVLKPEVQFVKLSIEQYIPRGKKLKDDN 602


>gi|170744979|ref|YP_001763278.1| type III restriction protein res subunit [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659386|gb|ACB28433.1| type III restriction protein res subunit [Methylobacterium
           radiotolerans JCM 2831]
          Length = 462

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 605 RNIRVRYMHSEVKT--LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           R   V   H + KT   ER  +I  L  G+  VL  ++L+ EG+D+P  G V +L     
Sbjct: 249 RGAGVAAAHVDGKTDAAERRRLIAGLGTGELRVLTNVDLIGEGVDVPAIGAVILLRPT-- 306

Query: 663 GFLRSKTSLIQTIGRAARNVNSK 685
              RS+   +Q++GRA R    K
Sbjct: 307 ---RSEARYLQSVGRALRPSAGK 326


>gi|123457078|ref|XP_001316270.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121898971|gb|EAY04047.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 513

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 5/111 (4%)

Query: 552 TGLVDPPVEIRSARTQVEDVYDE----INLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
            GL DPP  I      V D YD+    I+         L+    K   + + +YLYE N 
Sbjct: 311 VGLQDPPALIEQHFEYVRD-YDKFPALIDFLNAHDCPTLVFAERKTSVDRIEDYLYEENY 369

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
            V  +H +     R+  +     G+  ++V  ++   G+DIP  G V  +D
Sbjct: 370 PVVAIHGDRDMDNRLAALDGFTSGRARIMVATDVAARGIDIPNVGHVINMD 420


>gi|332006183|gb|AED93566.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
          Length = 655

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           S RT + D+   I + A+ G  I+ T  TKR A++++  L   +I    +H ++   +R 
Sbjct: 243 SKRTILSDL---ITVYAKGGKTIVFTQ-TKRDADEVSLAL-SNSIATEALHGDISQHQRE 297

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
             +   R GKF VLV  ++   GLDIP   LV
Sbjct: 298 RTLNAFRQGKFTVLVATDVASRGLDIPNVDLV 329


>gi|330881518|gb|EGH15667.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 597

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 58/290 (20%), Positives = 113/290 (38%), Gaps = 55/290 (18%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKE 248
           +R  +++  +   A +L  E K F P   V +F  +    YD + P       D   ++ 
Sbjct: 38  KRFTLLLTADSQSAERLEQELKFFAPTLPVLHFPDWETLPYDLFSPH-----QDIISQRI 92

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           +S+  ++  + H            +VV   + ++ +   +      + L +G  ++ + +
Sbjct: 93  ASLY-RLPELEHG----------VLVVPITTALHRLAPTKFLLGSSLVLDVGQKLDVEAM 141

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
            + L    Y+  D     G F V G  I++FP     + +R+ +F ++IE +  F P T 
Sbjct: 142 RTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPFRIDLFDDEIETLRTFDPDTQ 200

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I  VE++++                       L  R   L+KE       R  +R   
Sbjct: 201 RSIDKVESVRL-----------------------LPAREFPLQKEEVTRFKARFRERFDV 237

Query: 429 D------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           D       + L +  +   IE Y          E   TLF+++P+D+ +F
Sbjct: 238 DFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDFLPQDTQVF 282


>gi|322380295|ref|ZP_08054511.1| DNA recombinase RecG [Helicobacter suis HS5]
 gi|321147278|gb|EFX41962.1| DNA recombinase RecG [Helicobacter suis HS5]
          Length = 613

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 152 DQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQL 209
           DQ  AI+ + + +  +   + L++G  GSGKT   +A V  A    +++MAP  ILA Q+
Sbjct: 240 DQQKAISSIKQDLQGKVATKRLIMGDVGSGKTMVILASVALASPYKSLLMAPTSILAKQI 299

Query: 210 YSEFKNFFP 218
           Y+E   F P
Sbjct: 300 YTEALKFLP 308


>gi|320580417|gb|EFW94640.1| Putative ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 499

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+  L K+ A  + + L  +   V  +H ++   +R + ++D + GK ++L+  ++  
Sbjct: 337 KLLIFALYKKEAARVEKTLTYKGFSVAALHGDLNQAQRTQALQDFKAGKHNILLATDVAA 396

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLDIP   +V  L      F  +    +  IGR  R
Sbjct: 397 RGLDIPNVKVVINLT-----FPLTVEDYVHRIGRTGR 428


>gi|302558562|ref|ZP_07310904.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000]
 gi|302476180|gb|EFL39273.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000]
          Length = 868

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 34/64 (53%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TKR A DL + L +R      +H ++    R + +R  R GK DVLV  ++   
Sbjct: 297 VMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAAR 356

Query: 645 GLDI 648
           G+D+
Sbjct: 357 GIDV 360


>gi|226510222|ref|NP_001147777.1| nucleolar RNA helicase 2 [Zea mays]
 gi|195613718|gb|ACG28689.1| nucleolar RNA helicase 2 [Zea mays]
          Length = 613

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 8/118 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR A+ L  Y+  R+ + + +H ++   +R   +   R G+F++LV  ++  
Sbjct: 341 KCIVFTQTKREADRLA-YVMGRSYQCQALHGDISQNQRERTLSGFRDGRFNILVATDVAA 399

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSIQL 699
            GLDIP   LV   +      L      +   GR AR     S +++Y    T+++++
Sbjct: 400 RGLDIPNVDLVVHYEIPNTSEL-----FVHRSGRTARAGKKGSAILIYTYEQTRAVRV 452


>gi|195494738|ref|XP_002094967.1| GE22119 [Drosophila yakuba]
 gi|194181068|gb|EDW94679.1| GE22119 [Drosophila yakuba]
          Length = 594

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +QGL+  +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G   VL+
Sbjct: 363 RQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFREGSIWVLI 422

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+  G+D     LV   D     F  +  S I  IGR  R
Sbjct: 423 CTELMGRGIDFKGVNLVINYD-----FPPTTISYIHRIGRTGR 460


>gi|164656042|ref|XP_001729149.1| hypothetical protein MGL_3616 [Malassezia globosa CBS 7966]
 gi|159103039|gb|EDP41935.1| hypothetical protein MGL_3616 [Malassezia globosa CBS 7966]
          Length = 730

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 31/44 (70%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           ++VR+  S++ T ERI+++RD + G  D+LV  +L+  G+D+P 
Sbjct: 564 LQVRFYSSDLGTGERIQLLRDFQHGHIDLLVCSDLIARGIDLPH 607


>gi|164655646|ref|XP_001728952.1| hypothetical protein MGL_3946 [Malassezia globosa CBS 7966]
 gi|159102840|gb|EDP41738.1| hypothetical protein MGL_3946 [Malassezia globosa CBS 7966]
          Length = 396

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N +V  MH E++  ER  I+ + R
Sbjct: 255 DLYDTLTIT-----QAVIFCNTRRKVDWLTDRMRENNFQVSSMHGEMQQKERDAIMGEFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+    LV   D        ++ + I  IGR+ R
Sbjct: 310 QGGSRVLITTDVWARGIDVQNVSLVINYDLPT-----NRENYIHRIGRSGR 355


>gi|322419244|ref|YP_004198467.1| ATP-dependent DNA helicase RecG [Geobacter sp. M18]
 gi|320125631|gb|ADW13191.1| ATP-dependent DNA helicase RecG [Geobacter sp. M18]
          Length = 769

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 14/121 (11%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           +MAE L   ++  ++R+  +H  +   E+  +++  + G+ D+LV   ++  G+D+P   
Sbjct: 573 QMAEHLARDVFP-DLRLAVLHGRMSAAEKEAVMKSFKAGETDILVATTVIEVGIDVPNAT 631

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           ++ +  A++ G     + L Q  GR  R             ++ I LA D+ +   +K+L
Sbjct: 632 VMVVEHAERFGL----SQLHQLRGRVGRGCER---------SRCILLAGDKLSEDGQKRL 678

Query: 713 E 713
           E
Sbjct: 679 E 679


>gi|295674161|ref|XP_002797626.1| GPI inositol-deacylase [Paracoccidioides brasiliensis Pb01]
 gi|226280276|gb|EEH35842.1| GPI inositol-deacylase [Paracoccidioides brasiliensis Pb01]
          Length = 1440

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLVA 655
           LT+      I  RY+ S+ +   R E +   R  ++ VLV   L  EG DIP  +C L+A
Sbjct: 235 LTDTFRRFGIDARYITSQTRKNLRTEELEAFRNQEYPVLVNCGLFTEGTDIPNIDCVLLA 294

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR 680
                     RSK  LIQ IGR  R
Sbjct: 295 RPT-------RSKNLLIQMIGRGLR 312


>gi|317133050|ref|YP_004092364.1| primosomal protein N' [Ethanoligenens harbinense YUAN-3]
 gi|315471029|gb|ADU27633.1| primosomal protein N' [Ethanoligenens harbinense YUAN-3]
          Length = 813

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 7/58 (12%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           G++D+LVG  ++ +GLD P   LV +L AD+  +        R+ + L Q +GRA R 
Sbjct: 610 GEYDMLVGTQMVAKGLDFPNVTLVGVLSADQSLYSGDYRAAERTFSLLTQVVGRAGRG 667


>gi|239636308|ref|ZP_04677310.1| primosomal protein N' [Staphylococcus warneri L37603]
 gi|239597663|gb|EEQ80158.1| primosomal protein N' [Staphylococcus warneri L37603]
          Length = 802

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +++ D   GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 594 KLLNDFENGKGDILLGTQMIAKGLDYPNITLVGVLNADTMLNLPDFRASERTYQLLTQVA 653

Query: 676 GRAARN 681
           GRA R+
Sbjct: 654 GRAGRH 659


>gi|239625390|ref|ZP_04668421.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519620|gb|EEQ59486.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1438

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 10/129 (7%)

Query: 592 KRMAEDLTEY--LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           +R AE L  Y  L   +   R  H  +   +R E+ +DLR G+  +L   + +  G+D+ 
Sbjct: 308 RRYAEKLAYYVNLLGGDGFARVHHGSLSKEQRAEVEQDLRDGRLRLLCATSSMELGIDVG 367

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN--SKVILYADTITKSIQLAIDETTRR 707
           E  LV      + G  R+ +S +Q +GRA       S + +Y  T ++S+   +      
Sbjct: 368 ELDLVI-----QVGCPRTVSSTMQRLGRAGHGPGRVSVMYMYPRTASESVYCGMTAQV-A 421

Query: 708 REKQLEHNK 716
           R+  +EH K
Sbjct: 422 RQGGVEHTK 430


>gi|213649271|ref|ZP_03379324.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 1130

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 124/303 (40%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 4   LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 63

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 64  SPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCQHSYLHGHALV- 111

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E   +
Sbjct: 112 --------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQ-PY 162

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + +    
Sbjct: 163 RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWR-DTF 217

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E++++     A+ + Q+++         G+  +   Y + L      EP P LF Y P +
Sbjct: 218 EVKRD-----AEHIYQQVS--------KGTLPAGIEYWQPLFF---SEPLPPLFSYFPAN 261

Query: 469 SLL 471
           +L+
Sbjct: 262 TLV 264


>gi|163915660|gb|AAI57684.1| LOC100135374 protein [Xenopus (Silurana) tropicalis]
          Length = 898

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 2/104 (1%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V  K  AE+L   L + +  +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 454 VLIFVTKKANAEELANNLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVLVATDVAAR 513

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GLDIP    V   D  ++  + + T  I   GRA     +  +L
Sbjct: 514 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAGEKGVAHTLL 555


>gi|148697460|gb|EDL29407.1| mCG50480 [Mus musculus]
          Length = 111

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 25  TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLAHGIDVQQ 84

Query: 651 CGLVAILD--ADKEGFLRSKTS 670
             LV   D   ++E ++  +  
Sbjct: 85  VSLVINYDLPTNRENYIHRRCG 106


>gi|109478564|ref|XP_234443.4| PREDICTED: DEAD-box protein abstrakt-like [Rattus norvegicus]
          Length = 621

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 434 VLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 493

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 494 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 542

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 543 VLMDLKALLLEAKQKVPP 560


>gi|119178046|ref|XP_001240731.1| conserved hypothetical protein [Coccidioides immitis RS]
 gi|118575172|sp|Q1DP69|DBP2_COCIM RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 542

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  ++V  ++  
Sbjct: 374 KILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVAS 433

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+ +  +  +L+ D   +  +    +  IGR  R
Sbjct: 434 RGIDVRD--ITHVLNYD---YPNNSEDYVHRIGRTGR 465


>gi|50054446|ref|NP_001001910.1| probable ATP-dependent RNA helicase DDX4 [Sus scrofa]
 gi|51315697|sp|Q6GWX0|DDX4_PIG RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog;
           AltName: Full=Vasa-like protein
 gi|48727699|gb|AAT46129.1| VASA-like protein [Sus scrofa]
          Length = 722

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 540 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAA 599

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 600 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 643


>gi|113476495|ref|YP_722556.1| primosome assembly protein PriA [Trichodesmium erythraeum IMS101]
 gi|110167543|gb|ABG52083.1| replication restart DNA helicase PriA [Trichodesmium erythraeum
           IMS101]
          Length = 914

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 27/187 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL----RLGKFDVLVGINLLREGL 646
           T+++A++LT         +RY+  +  T  + +  R+L      G+ D+L+G  +L +GL
Sbjct: 679 TQKVAQELTRQF----PGLRYIRYDSDTTRKKDAHRNLLNQFANGEADLLIGTQMLTKGL 734

Query: 647 DIPECGLVAILDADKEGFL---------RSKTSLIQTIGRAARNVN-SKVILYADTITKS 696
           D+ +  LV ++ AD  G L         R+  +L+Q  GRA R  N  +VI+   T    
Sbjct: 735 DLAQVTLVGVVSAD--GLLHFSDYRANERTFQTLLQVAGRAGRGDNPGRVIIQTYTPEHP 792

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS-- 754
           +  A+         + E   +  ++       I+     + L     T +++ AQ+L+  
Sbjct: 793 VIQAVQRNDYESFVETELQGRAELHYPPYGRLIL-----LRLSSYDPTEVAVTAQELASV 847

Query: 755 LSKKKGK 761
           L +K+GK
Sbjct: 848 LREKEGK 854


>gi|332821347|ref|XP_003310753.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 1 [Pan
           troglodytes]
          Length = 690

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 508 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAA 567

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 568 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 611


>gi|331009375|gb|EGH89431.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 488

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L+  L E  +RV  +H  +K  E+  I+ + + G   +LV   ++  G+D+P   L+ 
Sbjct: 304 EELSSALGE--VRVGLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLMI 361

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 362 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 399


>gi|322379509|ref|ZP_08053874.1| DNA recombinase (recG) [Helicobacter suis HS1]
 gi|321148064|gb|EFX42599.1| DNA recombinase (recG) [Helicobacter suis HS1]
          Length = 613

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 152 DQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQL 209
           DQ  AI+ + + +  +   + L++G  GSGKT   +A V  A    +++MAP  ILA Q+
Sbjct: 240 DQQKAISSIKQDLQGKVATKRLIMGDVGSGKTMVILASVALASPYKSLLMAPTSILAKQI 299

Query: 210 YSEFKNFFP 218
           Y+E   F P
Sbjct: 300 YTEALKFLP 308


>gi|304437107|ref|ZP_07397070.1| transcription-repair coupling factor [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304370058|gb|EFM23720.1| transcription-repair coupling factor [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 1097

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 4/116 (3%)

Query: 266 LLERNDCIVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           LL     IV++ +      G S   +S+  + L++G  + ++ L+  L    Y+      
Sbjct: 112 LLRHEPIIVLADIGAAAQKGLSTTEFSRAALSLRLGQDLPRETLMERLSALGYEHVPEVE 171

Query: 325 IRGTFRVCGDSIEIFP-SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             G F V G  +++FP + L  +  RV  F  +I+ + E+ PLT + I+N+ T  I
Sbjct: 172 NVGQFSVRGGIVDVFPINALSPI--RVEFFDTEIDSMREYDPLTKRSIKNIGTASI 225


>gi|297787958|ref|XP_002862173.1| hypothetical protein ARALYDRAFT_333427 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297307387|gb|EFH38431.1| hypothetical protein ARALYDRAFT_333427 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 8/121 (6%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G + ++   TKR A+ L+ Y   R+ +   +H ++   +R   +   R G F +LV  +
Sbjct: 10  KGGKCIVFTQTKRDADRLS-YALARSFKCEALHGDISQSQRERTLAGFRDGHFKILVATD 68

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSIQ 698
           +   GLD+P   L+   +        +  + +   GR  R     S +++Y+   +++++
Sbjct: 69  VAARGLDVPNVDLIIHYE-----LPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVK 123

Query: 699 L 699
           +
Sbjct: 124 I 124


>gi|256390612|ref|YP_003112176.1| type III restriction protein res subunit [Catenulispora acidiphila
           DSM 44928]
 gi|256356838|gb|ACU70335.1| type III restriction protein res subunit [Catenulispora acidiphila
           DSM 44928]
          Length = 556

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 11/76 (14%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR- 666
           R  ++HS +    R  ++ + RLG+  V+  +++  EG+D+P+  L+        GFLR 
Sbjct: 403 RATFLHSGLSRQRRQILLNEFRLGRVPVITCVDVFNEGVDVPDVNLI--------GFLRV 454

Query: 667 --SKTSLIQTIGRAAR 680
             S+   +Q +GR  R
Sbjct: 455 THSRRIFVQQLGRGLR 470


>gi|240080515|ref|ZP_04725058.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae FA19]
 gi|240113117|ref|ZP_04727607.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae MS11]
 gi|240118171|ref|ZP_04732233.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae PID1]
 gi|240123719|ref|ZP_04736675.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae PID332]
 gi|268596647|ref|ZP_06130814.1| transcription-repair coupling factor [Neisseria gonorrhoeae FA19]
 gi|268550435|gb|EEZ45454.1| transcription-repair coupling factor [Neisseria gonorrhoeae FA19]
          Length = 1234

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 17/199 (8%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A +L + ++ F PH+    F+  ++    E + P  D   E+ S++ +    ++  A   
Sbjct: 46  ALRLQTAWRFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ----IKSGAA-- 98

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
                D + V   + +  +  V   +     LK G +++   L + LV   Y      + 
Sbjct: 99  -----DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVA 153

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
            G F V G  +++FP   E   +R+ +F ++I+ I  F   T + I  V  I++     +
Sbjct: 154 AGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDGIKTFDTDTQRTISPVSEIRLLPAHEF 212

Query: 386 VTPRPTLNTAMKYIKEELK 404
               PT + A K  +   +
Sbjct: 213 ----PTDSEAQKIFRSRFR 227



 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 923  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 979

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 980  -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1015


>gi|114153757|sp|Q9LYJ9|RH46_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 46
 gi|332004672|gb|AED92055.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana]
          Length = 645

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           + G +I++   TKRM + L   L  R      +H +    ER +++   R G+  VLV  
Sbjct: 404 EPGSKIIIFCSTKRMCDQLARNL-TRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVAT 462

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++   GLD+ +  +V   D     F       +  IGR  R
Sbjct: 463 DVAARGLDVKDIRVVVNYD-----FPNGVEDYVHRIGRTGR 498


>gi|39944894|ref|XP_361984.1| hypothetical protein MGG_04429 [Magnaporthe oryzae 70-15]
 gi|189082434|sp|A4RN08|MPH1_MAGO7 RecName: Full=ATP-dependent DNA helicase MPH1
 gi|145021550|gb|EDK05679.1| hypothetical protein MGG_04429 [Magnaporthe oryzae 70-15]
          Length = 1102

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  ++IE I   R G F+VLV  ++  EGLDI +  L+   DA       S   ++Q +
Sbjct: 547 MKQKQQIETIAKFRDGIFNVLVATSIGEEGLDIGQVDLIICYDASS-----SPIRMLQRM 601

Query: 676 GRAARNVNSKVIL 688
           GR  R    K+ L
Sbjct: 602 GRTGRKRAGKITL 614


>gi|3047077|gb|AAC13590.1| contains similarity to the conserved C-terminal domain of helicases
           (Pfam: helicase_C.hmm, score: 90.11), similar to
           DEAD-box h [Arabidopsis thaliana]
          Length = 477

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           S RT + D+   I + A+ G  I+ T  TKR A++++  L   +I    +H ++   +R 
Sbjct: 338 SKRTILSDL---ITVYAKGGKTIVFTQ-TKRDADEVSLAL-SNSIATEALHGDISQHQRE 392

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
             +   R GKF VLV  ++   GLDIP   LV
Sbjct: 393 RTLNAFRQGKFTVLVATDVASRGLDIPNVDLV 424


>gi|88808865|ref|ZP_01124374.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 7805]
 gi|88786807|gb|EAR17965.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 7805]
          Length = 1180

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 41/210 (19%), Positives = 95/210 (45%), Gaps = 15/210 (7%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           LL G   + +    + +     RP +V+ P    A +  +        +A  Y  S    
Sbjct: 30  LLRGAGRAARALVASAMARHQDRPLLVVVPTLEEAGRWTALLDLMGWRSAQLYPTSEGSP 89

Query: 232 YQPEAYVPRTDTYIEKESSINE-QIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
           Y+P  + P ++    +   ++E Q++           + ND  +V++  C+   +   + 
Sbjct: 90  YEP--FDPTSEITWGQLQVLSELQVEG----------QSNDLAIVATERCLQPHLPPPQV 137

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
            +     L+ GD+++ + L  SL +  Y+R       GT+   GD +++FP   E +  R
Sbjct: 138 LADRCRTLRKGDTLDLEVLALSLSQLGYERVSTIDQEGTWSRRGDIVDVFPVSSE-LPVR 196

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           +  FG++++++ EF P + + +  ++++++
Sbjct: 197 LEFFGDELDKLREFDPASQRSLDPIDSLRL 226


>gi|296393416|ref|YP_003658300.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296180563|gb|ADG97469.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
           44985]
          Length = 764

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  MH  +   E+ + +     G+  VLV   ++  G+D+P   ++ +LDAD+ G  
Sbjct: 585 GVRLGLMHGALPAAEKDQAMASFSAGETQVLVSTTVIEVGVDVPNSTVMVVLDADRFGI- 643

Query: 666 RSKTSLIQTIGRAARNVNSKVILY 689
              + L Q  GR  R  +  + L+
Sbjct: 644 ---SQLHQLRGRVGRGEHPGLCLF 664


>gi|291550022|emb|CBL26284.1| transcription-repair coupling factor [Ruminococcus torques L2-14]
          Length = 1118

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   +  +I+ D   G  DVLV   ++  GLDI     + I DAD+ G  
Sbjct: 801 DARVSYAHGQMNEHQLEDIMYDFINGDIDVLVSTTIIETGLDIANANTMIIQDADRFGL- 859

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 860 ---SQLYQLRGRVGRS 872


>gi|262195552|ref|YP_003266761.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365]
 gi|262078899|gb|ACY14868.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM
           14365]
          Length = 782

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           RV  +H  +   ER  ++ D R G+ D+LV   ++  G+D+PE  ++ IL+A   G 
Sbjct: 596 RVGLVHGRMVQAERDRVMGDFRAGRVDILVATTVIEVGVDVPEATVMVILEAHCFGL 652


>gi|187450507|emb|CAO85533.1| ENSANGG00000013284 protein [Anopheles gambiae]
          Length = 225

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I++ V TK+  +DL + +         +H +    ER  +++D R GK  +LV  ++  
Sbjct: 87  KIIIFVETKKKVDDLLKNIVRDGYGATSIHGDKSQTERDYVLQDFRHGKSTILVATDVAA 146

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     +  S    I  IGR  R
Sbjct: 147 RGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGR 178


>gi|154301554|ref|XP_001551189.1| hypothetical protein BC1G_10104 [Botryotinia fuckeliana B05.10]
 gi|150855766|gb|EDN30958.1| hypothetical protein BC1G_10104 [Botryotinia fuckeliana B05.10]
          Length = 1842

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 6/61 (9%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + R GK + L+  ++  EGLDIP+C LV   D        +    IQ+ GR AR++NS
Sbjct: 801 MHNFRNGKINCLIATSVAEEGLDIPDCNLVVRFD-----LYNTVIQYIQSRGR-ARHINS 854

Query: 685 K 685
           +
Sbjct: 855 R 855


>gi|115613179|ref|XP_781239.2| PREDICTED: similar to Fanconi anemia complementation group M
           [Strongylocentrotus purpuratus]
 gi|115925565|ref|XP_001193687.1| PREDICTED: similar to Fanconi anemia complementation group M
           [Strongylocentrotus purpuratus]
          Length = 2463

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 8/82 (9%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+I ++ + + G ++ LV   +  EGLDI +  L+   DA K     S   L+Q +GR  
Sbjct: 493 EQIRVVSEFKNGGYNTLVSTCVGEEGLDIGDVDLIVCFDAHK-----SPIRLVQRMGRTG 547

Query: 680 RNVNSKVILYADTITKSIQLAI 701
           R    ++++    +T+  + AI
Sbjct: 548 RKREGRIVML---VTEGKEAAI 566


>gi|91091128|ref|XP_969655.1| PREDICTED: similar to werner syndrome helicase [Tribolium
           castaneum]
 gi|270013136|gb|EFA09584.1| hypothetical protein TcasGA2_TC011701 [Tribolium castaneum]
          Length = 874

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++  +T+R  EDL E L    +R R  H+ +   ER E   +    K DV+V       G
Sbjct: 270 IIYCITRRQTEDLCEILKNCGVRCRVYHAGLSQKERQEAHEEFVRDKVDVIVATIAFGMG 329

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           +D P+     I +    G   S  S  Q +GRA R+
Sbjct: 330 IDKPD-----IRNVIHYGSSNSVESYYQEVGRAGRD 360


>gi|317140423|gb|ADV03672.1| vasa-like protein [Gadus morhua]
          Length = 354

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L + N+    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 264 RTMVFVETKRQADFIAAFLCQENVATTSIHGDREQREREQALGDFRSGKCPVLVATSVAA 323

Query: 644 EGLDI 648
            GLDI
Sbjct: 324 RGLDI 328


>gi|315633797|ref|ZP_07889087.1| DNA helicase RecG [Aggregatibacter segnis ATCC 33393]
 gi|315477839|gb|EFU68581.1| DNA helicase RecG [Aggregatibacter segnis ATCC 33393]
          Length = 693

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H  +K  E+  ++   +L + D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 517 HLRIGLVHGRMKPSEKQAVMEQFKLAELDLLVATTVIEVGVDVPNASLMIIENAERLGL- 575

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITK 695
              + L Q  GR  R   +   V++Y   + K
Sbjct: 576 ---SQLHQLRGRVGRGSTASFCVLMYKPPLGK 604


>gi|304385533|ref|ZP_07367877.1| transcription-repair coupling factor [Pediococcus acidilactici DSM
           20284]
 gi|304328037|gb|EFL95259.1| transcription-repair coupling factor [Pediococcus acidilactici DSM
           20284]
          Length = 1165

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y+H ++   +  +I+ D   G++DVLV   ++  G+DIP    + + +AD  G L  
Sbjct: 855 RVAYIHGQMTEKQLEDILFDFIEGEYDVLVTTTIIETGIDIPNANTLFVENADHMG-LSQ 913

Query: 668 KTSLIQTIGRAAR 680
              L   IGR++R
Sbjct: 914 LYQLRGRIGRSSR 926


>gi|300122033|emb|CBK22607.2| unnamed protein product [Blastocystis hominis]
          Length = 408

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  E L   L E N  V  MH ++   ER  I+ + R G   VL+  ++   GLD+ +
Sbjct: 244 TRRKVEWLAAKLREANFTVSSMHGDMPQKERDRIMEEFRAGNSRVLIATDVWGRGLDVQQ 303

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        S+   I  IGR+ R
Sbjct: 304 VSLVINYDLPN-----SRELYIHRIGRSGR 328


>gi|270290199|ref|ZP_06196425.1| transcription-repair coupling factor [Pediococcus acidilactici 7_4]
 gi|270281736|gb|EFA27568.1| transcription-repair coupling factor [Pediococcus acidilactici 7_4]
          Length = 1165

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y+H ++   +  +I+ D   G++DVLV   ++  G+DIP    + + +AD  G L  
Sbjct: 855 RVAYIHGQMTEKQLEDILFDFIEGEYDVLVTTTIIETGIDIPNANTLFVENADHMG-LSQ 913

Query: 668 KTSLIQTIGRAAR 680
              L   IGR++R
Sbjct: 914 LYQLRGRIGRSSR 926


>gi|269960991|ref|ZP_06175360.1| transcription-repair coupling factor [Vibrio harveyi 1DA3]
 gi|269834210|gb|EEZ88300.1| transcription-repair coupling factor [Vibrio harveyi 1DA3]
          Length = 1123

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 117/279 (41%), Gaps = 38/279 (13%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
           ++++ P+  +A +L +E + F      +  VS +  ++   Y    D +   +  I+++I
Sbjct: 14  SLLVVPDPQMALKLQAEIEQF-----TDQSVSLFPDWETLPY----DNFSPHQEIISDRI 64

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS-QMIVQLKIGDSVEQKELLSSLVK 314
            R+       L  +   + +  VS +    S   +  Q  + +K GD    ++L   L  
Sbjct: 65  ARLYQ-----LPNQAGGVTIVPVSTVLQRQSPRDFLLQHTLMVKTGDQFSLEKLRVQLEN 119

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y+  D     G +   G  +++FP    D  +R+  F ++I+ I  F P   + I ++
Sbjct: 120 SGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PYRIDFFDDEIDTIRTFDPENQRSIEDI 178

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           + I++     +    PT   A++  +   + +           EA+R  + I     M  
Sbjct: 179 QQIQLLPAHEF----PTTKAAIEDFRTRWRSQF----------EARREPESIY----MQV 220

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
           T G+  +   Y + L   +      TLF+Y+PEDS L +
Sbjct: 221 TKGTWPAGIEYWQPLFFDHT----ETLFDYLPEDSQLII 255


>gi|303315651|ref|XP_003067830.1| ATP-dependent RNA helicase DBP2, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240107506|gb|EER25685.1| ATP-dependent RNA helicase DBP2, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320034056|gb|EFW16002.1| ATP-dependent RNA helicase DBP2 [Coccidioides posadasii str.
           Silveira]
          Length = 545

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  ++V  ++  
Sbjct: 377 KILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVAS 436

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+ +  +  +L+ D   +  +    +  IGR  R
Sbjct: 437 RGIDVRD--ITHVLNYD---YPNNSEDYVHRIGRTGR 468


>gi|295672658|ref|XP_002796875.1| ATP-dependent RNA helicase DED1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226282247|gb|EEH37813.1| ATP-dependent RNA helicase DED1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 683

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L+++L +  +    +H +    ER   +   R G+  +LV   +   G
Sbjct: 460 LVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTGRCPILVATAVAARG 519

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           LDIP    V   D   E         +  IGR  R  N+ +     + +K+ ++A
Sbjct: 520 LDIPNVTHVINYDLPNE-----IDDYVHRIGRTGRAGNTGLSTAFFSRSKNFKIA 569


>gi|226315226|ref|YP_002775122.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226098176|dbj|BAH46618.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 513

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 28/175 (16%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L +R      +H ++   +R  ++R  + G  +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALTKRGYGAEGIHGDLNQAKRDSVLRKFKEGTIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-AIDETTRRR- 708
            G+  + + D     +   S +  IGR  R   + + +   T  +   L  I+ TT RR 
Sbjct: 307 SGVTHVFNFD---IPQDSESYVHRIGRTGRAGKTGLAITFVTSREIDHLRLIERTTNRRM 363

Query: 709 --------------------EKQLEHNKKHNINP-QSVKEKIMEVIDPILLEDAA 742
                               +K LE + + +++  +++ E+++E +D + L  AA
Sbjct: 364 ERRAVPSMAEALEGQQKMTVDKILEASGRDDLSAYKTLAEQLLEDVDSVTLVSAA 418


>gi|225388633|ref|ZP_03758357.1| hypothetical protein CLOSTASPAR_02369 [Clostridium asparagiforme
           DSM 15981]
 gi|225045309|gb|EEG55555.1| hypothetical protein CLOSTASPAR_02369 [Clostridium asparagiforme
           DSM 15981]
          Length = 829

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 8/108 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK---TLERIEIIRDLRLGKFDVLVGIN 640
           R L    +++ AE + +    RNI    ++S+       +R E +R LR G+  V+  ++
Sbjct: 451 RALGFCCSRKHAEQMAKEFCRRNIPAAAVYSDSDGEYAADRGEAVRRLRDGELRVIFSVD 510

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +  EGLDI E  +V  L   +     S    +Q +GR  R    K  L
Sbjct: 511 MFNEGLDISELDMVMFLRPTE-----SPVVFLQQLGRGLRKSRGKEFL 553


>gi|260817577|ref|XP_002603662.1| hypothetical protein BRAFLDRAFT_235564 [Branchiostoma floridae]
 gi|229288984|gb|EEN59673.1| hypothetical protein BRAFLDRAFT_235564 [Branchiostoma floridae]
          Length = 701

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+IR  R G+ ++L+   +  EGLDI EC  V      + G + ++ +++Q  GR AR  
Sbjct: 439 EVIRQFREGELNLLIATTVAEEGLDIKECNFVI-----RYGLVTNEIAMMQASGR-ARAE 492

Query: 683 NSKVILYADTITKSIQ 698
           +S   L A   T + Q
Sbjct: 493 DSTYTLVAGGKTGAGQ 508


>gi|146180580|ref|XP_001021192.2| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila]
 gi|146144450|gb|EAS00947.2| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila SB210]
          Length = 602

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            +D+ EYL  + I V  +H   K  ER + +++ +  + DVLV  ++  +GLD P    V
Sbjct: 416 VDDIHEYLLLKGIDVTSLHGGKKQEERTKAMKEFQQSQKDVLVATDIGAKGLDFPNVQHV 475

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR 680
              D  KE       S +  IGR  R
Sbjct: 476 INFDMPKE-----IESYVHRIGRTGR 496


>gi|134034145|sp|Q0CXD0|IF4A_ASPTN RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
          Length = 396

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH +++  +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 271 TRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDIIMKEFRSGSSRVLIATDLLARGIDVQQ 330

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 331 VSLVINYDLPANRENYI 347


>gi|30271874|gb|AAP29972.1| transcription-repair coupling protein Mfd [Pseudomonas putida]
          Length = 421

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 41/215 (19%), Positives = 90/215 (41%), Gaps = 23/215 (10%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   +  R  +++  +   A +L  E + F P   V  F  +    YD 
Sbjct: 13  LPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDWETLPYDL 72

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESY 290
           + P                 ++ I   R ++   L E +  I+V  V+  ++ +      
Sbjct: 73  FSP-----------------HQDIISQRIASLYRLPELSHGILVVPVTTALHRLAPTRFL 115

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
               + L +G +++ +++   L    Y+  D     G F V G  I++FP     + +R+
Sbjct: 116 LGSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMG-SKLPYRI 174

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
            +F ++IE +  F P T + I  V+++++     +
Sbjct: 175 DLFDDEIETLRTFDPETQRSIDKVDSVRLLPAREF 209


>gi|32471209|ref|NP_864202.1| ATP-dependent DNA helicase RecG [Rhodopirellula baltica SH 1]
 gi|32396911|emb|CAD71879.1| ATP-dependent DNA helicase RecG [Rhodopirellula baltica SH 1]
          Length = 734

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 29/139 (20%)

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           LVDP        T V   Y+++     +GLR+ L  L  RMA D                
Sbjct: 522 LVDPAEPPAEDITSVHSTYEQLRTGPLKGLRVGL--LHGRMASD---------------- 563

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
                 E+ +++     G+ DVLV   ++  G+D+P   ++AIL  ++ G       L Q
Sbjct: 564 ------EKQQVMESFAEGELDVLVSTTVIEVGIDVPNATVMAILGGNRFGL----AQLHQ 613

Query: 674 TIGRAARNVNSK-VILYAD 691
             GR +R  ++  V ++ D
Sbjct: 614 LRGRVSRGTHAGHVCVFVD 632


>gi|332821351|ref|XP_003310755.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 3 [Pan
           troglodytes]
          Length = 704

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 522 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAA 581

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 582 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 625


>gi|332519222|ref|ZP_08395689.1| transcription-repair coupling factor [Lacinutrix algicola 5H-3-7-4]
 gi|332045070|gb|EGI81263.1| transcription-repair coupling factor [Lacinutrix algicola 5H-3-7-4]
          Length = 1120

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 48/239 (20%), Positives = 106/239 (44%), Gaps = 30/239 (12%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G+ GS  +F +++  +  Q+P +++  +K  AA   ++F+       V ++       
Sbjct: 40  LKGLVGSSLSFVVSESFKNAQKPFLLIFNDKEEAAFYLNDFEQLLNSKDVLFY------- 92

Query: 233 QPEAYVPRTDTYIEKESSIN-----EQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGS 286
            P +Y  R    IE+  + N     E ++R+         ++   I+V+    ++  + +
Sbjct: 93  -PGSY--RRPYQIEETDNANVLLRAEVLNRINS-------QKKPAIIVTYPDALFEKVVT 142

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            +   +  +++ +GD +    +   L + ++KR D     G F V G  +++F S   D 
Sbjct: 143 RKELERNTLKINVGDDLNIDFVNEVLFEYKFKRVDFVTEPGEFSVRGGIVDVF-SFSHDE 201

Query: 347 AWRVSMFGNDIEEISEF---YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            +R+  FG++++ I  F     L+ ++I+ +  I    N      R +     KYI ++
Sbjct: 202 PYRIEFFGDEVDSIRTFDVETQLSNEQIKKIGIIPNVENKFLEESRASF---FKYIAQK 257



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLT----VLTKRMAEDLTEYLYERNIRVRYMH 613
           P+E    R   E + D ++   Q+G +I          K +A  L   + +  I + +  
Sbjct: 747 PIESNVIRFNEETIRDAVSYEIQRGGQIFFIHNRIENIKEVAGMLQRLVPDAKIGIGHGQ 806

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            + K LE  E++     G FDVLV   ++  GLD+P    + I +A+  G     + L Q
Sbjct: 807 LDGKKLE--ELMLAFINGDFDVLVSTTIIESGLDVPNANTIFINNANNFGL----SDLHQ 860

Query: 674 TIGRAARNVNSKVILY 689
             GR  R+ N K   Y
Sbjct: 861 MRGRVGRS-NKKAFCY 875


>gi|328780921|ref|XP_394723.3| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
           mellifera]
          Length = 726

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +   +G ++++ V TK+  +D+T+ +         +H +    ER  ++ + R GK  +L
Sbjct: 348 IGKDRGSKMIIFVETKKKVDDITKAIKREGWPAISIHGDKSQPERDYVLSEFRNGKTMIL 407

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLD+ +   V   D     +  S    I  IGR  R
Sbjct: 408 VATDVAARGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGR 446


>gi|325918892|ref|ZP_08180966.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
           35937]
 gi|325534878|gb|EGD06800.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
           35937]
          Length = 636

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA RN ++  IL+     K +  +I+
Sbjct: 311 GLDVERVSHVLNYDIPYDTESYVHR----IGRTGRAGRNGDA--ILFVTPREKGMLRSIE 364

Query: 703 ETTRRREKQLEHNKKHNIN 721
             TR+  ++++      +N
Sbjct: 365 RATRQPIEEMQLPSVDAVN 383


>gi|301605166|ref|XP_002932198.1| PREDICTED: probable ATP-dependent RNA helicase DDX59-like [Xenopus
           (Silurana) tropicalis]
          Length = 785

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 7/97 (7%)

Query: 586 LLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +L  +  R+  DL      +   +    MHS+   +ER++I++ L  G++DV+V   +L 
Sbjct: 614 VLVFVDCRLGADLLSDAVSKITGLECVAMHSDKSQVERMKILQGLLQGEYDVVVSTGVLG 673

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+    LV   D        S    +  IGRA R
Sbjct: 674 RGLDLVNVKLVVNFD-----MPSSMDEYVHQIGRAGR 705


>gi|289668227|ref|ZP_06489302.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 640

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA RN ++  IL+     K +  +I+
Sbjct: 311 GLDVERVSHVLNYDIPYDTESYVHR----IGRTGRAGRNGDA--ILFVTPREKGMLRSIE 364

Query: 703 ETTRR 707
             TR+
Sbjct: 365 RATRQ 369


>gi|256852224|ref|ZP_05557610.1| RNA helicase [Lactobacillus jensenii 27-2-CHN]
 gi|260661744|ref|ZP_05862655.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           115-3-CHN]
 gi|282932648|ref|ZP_06338062.1| ATP-dependent RNA helicase DeaD [Lactobacillus jensenii 208-1]
 gi|256615270|gb|EEU20461.1| RNA helicase [Lactobacillus jensenii 27-2-CHN]
 gi|260547491|gb|EEX23470.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           115-3-CHN]
 gi|281303222|gb|EFA95410.1| ATP-dependent RNA helicase DeaD [Lactobacillus jensenii 208-1]
          Length = 452

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++ +YL ++ +RV  +H  +   ER   +R +R G F  +V  +L   G+DI  
Sbjct: 253 TKQKVDEVAKYLQDQGLRVAKIHGGITERERKRTLRLVRQGDFQYVVATDLAARGIDIDG 312

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +  K+        +I  IGR  RN
Sbjct: 313 VSLVINYELPKD-----LEFVIHRIGRTGRN 338


>gi|216548263|ref|NP_001136021.1| probable ATP-dependent RNA helicase DDX4 isoform 2 [Homo sapiens]
          Length = 690

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 508 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAA 567

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 568 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 611


>gi|189205613|ref|XP_001939141.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187975234|gb|EDU41860.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1572

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 15/84 (17%)

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           E+NI +R          +I  +   R G+ + L   ++  EGLDIP+C LV   D     
Sbjct: 508 EQNISLR---------NQILTVAKFRRGELNCLFATSVAEEGLDIPQCNLVVRFD----- 553

Query: 664 FLRSKTSLIQTIGRAARNVNSKVI 687
             R+  + +Q+ GR AR+ NSK +
Sbjct: 554 LYRTMIAYVQSRGR-ARHRNSKYL 576


>gi|83648397|ref|YP_436832.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83636440|gb|ABC32407.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 593

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 8/145 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK    +L E L  R      ++ +     R + I  L+ G+ D++V  ++   
Sbjct: 254 MIIFVRTKSATTELAEKLQARGYAAEALNGDQTQKIREQTIDRLKKGRLDIVVATDVAAR 313

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+   GLV   D   D E ++      I   GRA R    K IL+A    + +  AI+
Sbjct: 314 GLDVERIGLVLNYDIPYDTEAYVHR----IGRTGRAGR--EGKAILFAAPKERRLLRAIE 367

Query: 703 ETTRRREKQLEHNKKHNINPQSVKE 727
             T++     E      I+ Q +++
Sbjct: 368 SATKQPLTPYEAPSAEKISEQRIQQ 392


>gi|77460087|ref|YP_349594.1| transcription-repair coupling factor [Pseudomonas fluorescens
           Pf0-1]
 gi|77384090|gb|ABA75603.1| transcription-repair coupling factor [Pseudomonas fluorescens
           Pf0-1]
          Length = 1149

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 58/301 (19%), Positives = 120/301 (39%), Gaps = 43/301 (14%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   A +R  +++  +   A +L  E   F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +   +   
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELEHG----------VLVVPITTALHRLAPTKFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++ +++ S L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDVGQKLDVEQMRSRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPYRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P   + I  V+++K+     +    P    A+   K   + R     
Sbjct: 184 LFDDEIETLRTFDPENQRSIDKVDSVKLLPAKEF----PLQKDAVTRFKARFRERF---- 235

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                     ++ R     + L +  +   IE Y          E   TLF+Y+P+D+ +
Sbjct: 236 ---------DVDFRRCPIFQDLSSGITPAGIEYYLPLFF-----EETSTLFDYLPQDTQV 281

Query: 472 F 472
           F
Sbjct: 282 F 282



 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 37/135 (27%)

Query: 605 RNIRVRYMHSEVKTLERI-----EIIRDLRLG---------------------KFDVLVG 638
           R  +V Y+H++VKT+E+      E++ + R+G                     +F+VL+ 
Sbjct: 810 RGGQVYYLHNDVKTIEKCAAELAELVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLIA 869

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + I  ADK G       L Q  GR  R+ +     YA  +T   Q
Sbjct: 870 STIIETGIDVPSANTIIIERADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPPRQ 922

Query: 699 LAIDETTRRREKQLE 713
               + T   EK+LE
Sbjct: 923 ----QITGDAEKRLE 933


>gi|47217820|emb|CAG07234.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 737

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V  K  +E+L   L +    +  +H ++   ER ++I D +     +LV  ++   
Sbjct: 349 VLIFVTKKTNSEELATNLTQEGYSLGLLHGDMDQSERNKVISDFKKSNMPILVATDVAAR 408

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K + Y    +K    A D
Sbjct: 409 GLDIPSIRTVVNYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTSKDSSFAGD 460


>gi|309363783|emb|CAP25885.2| CBR-DRH-1 protein [Caenorhabditis briggsae AF16]
          Length = 1059

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 14/120 (11%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++E +R    G+  VLV  ++  EGLD+ EC LV      K  +  ++ + +Q  GR  
Sbjct: 769 KQMEKLRKFATGEIRVLVATSVAEEGLDVAECNLVI-----KYNYATNEIAHVQRRGR-G 822

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK---KHNINPQSVKEKIMEVIDPI 736
           R +NS  +L    +T SI L  D+    R+K+   N+   K   NP + ++ +M  I  I
Sbjct: 823 RAMNSTCVL----VTNSIPLR-DQEGANRDKENMMNQALLKITTNPGAFRDAVMAEIGNI 877


>gi|311113805|ref|YP_003985027.1| ATP-dependent DNA helicase [Rothia dentocariosa ATCC 17931]
 gi|310945299|gb|ADP41593.1| ATP-dependent DNA helicase [Rothia dentocariosa ATCC 17931]
          Length = 1119

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 8/88 (9%)

Query: 598  LTEYLYER----NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            +T YL +       R+  +H  +   E+  ++     G+ D+LV   ++  G+++P   L
Sbjct: 923  MTAYLKQNPALTGTRIASLHGRMDPEEKTAVMTAFERGEIDILVSTTVIEVGVNVPNATL 982

Query: 654  VAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I+DAD+ G     + L Q  GR  R 
Sbjct: 983  MMIMDADRFGI----SGLHQLRGRVGRG 1006


>gi|283457869|ref|YP_003362469.1| RecG-like helicase [Rothia mucilaginosa DY-18]
 gi|283133884|dbj|BAI64649.1| RecG-like helicase [Rothia mucilaginosa DY-18]
          Length = 1215

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 606  NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
             +R+  +H  +   E+  ++     G+ D+L+   ++  G+++P   L+ I+DAD+ G  
Sbjct: 1031 GVRIGTLHGRMDPAEKTAVMTAFERGEIDLLISTTVIEVGVNVPNATLMIIMDADRFGI- 1089

Query: 666  RSKTSLIQTIGRAARN 681
               + L Q  GR  R 
Sbjct: 1090 ---SGLHQLRGRVGRG 1102


>gi|213402561|ref|XP_002172053.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000100|gb|EEB05760.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces japonicus
           yFS275]
          Length = 626

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ LT++L   +     +H +    ER   +   R G+  ++V   +   G
Sbjct: 427 LIFVETKRMADALTDFLLNSSFPATSIHGDRTQRERERALELFRSGRSSIMVATAVASRG 486

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           LDIP    V   D   +         +  IGR  R  N+
Sbjct: 487 LDIPNVTHVINYDLPTD-----IDDYVHRIGRTGRAGNT 520


>gi|187450441|emb|CAO85519.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450443|emb|CAO85520.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450445|emb|CAO85521.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450447|emb|CAO85522.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450449|emb|CAO85523.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450451|emb|CAO85524.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450453|emb|CAO85525.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450455|emb|CAO85526.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450457|emb|CAO85527.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450459|emb|CAO85528.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450461|emb|CAO85529.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450463|emb|CAO85530.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450465|emb|CAO85531.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450467|emb|CAO85532.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450509|emb|CAO85534.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450511|emb|CAO85535.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450513|emb|CAO85536.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450515|emb|CAO85537.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450517|emb|CAO85538.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450519|emb|CAO85539.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450521|emb|CAO85540.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450523|emb|CAO85541.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450525|emb|CAO85542.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450527|emb|CAO85543.1| ENSANGG00000013284 protein [Anopheles gambiae]
          Length = 225

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I++ V TK+  +DL + +         +H +    ER  +++D R GK  +LV  ++  
Sbjct: 87  KIIIFVETKKKVDDLLKNIVRDGYGATSIHGDKSQTERDYVLQDFRHGKSTILVATDVAA 146

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     +  S    I  IGR  R
Sbjct: 147 RGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGR 178


>gi|168017610|ref|XP_001761340.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687346|gb|EDQ73729.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 589

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            QQ L  L+ V TK+ A+ L ++L         +H +    ER   +R  R G   +LV 
Sbjct: 398 GQQSL-TLVFVETKKGADSLEDWLCRMGFPATTIHGDRSQQEREHALRSFRTGVTPILVA 456

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
            ++   GLDIP    V   D   +         +  IGR  R   S V
Sbjct: 457 TDVAARGLDIPHVAHVVNFDLPSD-----IDDYVHRIGRTGRAGKSGV 499


>gi|169603375|ref|XP_001795109.1| hypothetical protein SNOG_04697 [Phaeosphaeria nodorum SN15]
 gi|160706381|gb|EAT88457.2| hypothetical protein SNOG_04697 [Phaeosphaeria nodorum SN15]
          Length = 1275

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 15/126 (11%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYL--YERNIRVRYM-------HSE-VKTLERI 622
           D +  A     RI++    +  AE+++  L  +E  IR R         +SE +   E++
Sbjct: 664 DNVEGAPPSQTRIMVFAHFRDSAEEISRILKRHEPMIRPRVFVGQSTGKNSEGMSQKEQL 723

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E I   + G F+ L+  ++  EGLDI E  L+   D+       S   ++Q +GR  R  
Sbjct: 724 EAIEQFKQGTFNTLIATSIGEEGLDIGEVDLIICYDSKA-----SPIRMLQRMGRTGRKR 778

Query: 683 NSKVIL 688
             K+++
Sbjct: 779 QGKIVM 784


>gi|126699799|ref|YP_001088696.1| ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|115251236|emb|CAJ69067.1| ATP-dependent RNA helicase [Clostridium difficile]
          Length = 497

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 18/143 (12%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK     L   + +    +R +H+++    RI +I+D +  KF++LV  ++   
Sbjct: 248 VIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILVSSDVASR 307

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNS-KVIL--------YADTI 693
           G+ I +  LV   D   DKE +       I  IGR  R  NS K I         Y + I
Sbjct: 308 GIHIDDISLVINYDVPQDKENY-------IHRIGRTGRKGNSGKAITIVTEKDEKYIENI 360

Query: 694 TKSIQLAIDETTRRREKQLEHNK 716
              I   I+E T   + ++ H K
Sbjct: 361 ETYIGYKINELTDIEQSRITHGK 383


>gi|163838674|ref|NP_001106217.1| eukaryotic initiation factor 4A-III [Bombyx mori]
 gi|110376569|gb|ABG73410.1| eIF4AIII protein [Bombyx mori]
          Length = 405

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LT+ + E N  V  MH ++   ER  I+++ R
Sbjct: 264 DLYDTLTIT-----QAVIFCNTKRKVDWLTQKMQEANFTVSSMHGDMPQKERDNIMKEFR 318

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 319 SGQSRVLITTDVWARGIDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 364


>gi|56413798|ref|YP_150873.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362721|ref|YP_002142358.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128055|gb|AAV77561.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094198|emb|CAR59702.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 1148

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 127/309 (41%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q  LG +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++  
Sbjct: 16  QCQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCPHSYLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E   +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + +
Sbjct: 176 SEQ-PYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +    E++++     A+ + Q+++         G+  +   Y + L      EP P LF
Sbjct: 231 WR-DTFEVKRD-----AEHIYQQVS--------KGTLPAGIEYWQPLFF---SEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++L+
Sbjct: 274 SYFPANTLV 282



 Score = 37.4 bits (85), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|21243540|ref|NP_643122.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109105|gb|AAM37658.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 632

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA RN ++  IL+     K +  +I+
Sbjct: 311 GLDVERISHVLNYDIPYDTESYVHR----IGRTGRAGRNGDA--ILFVTPREKGMLRSIE 364

Query: 703 ETTRRREKQLEHNKKHNIN 721
             TR+  ++++      +N
Sbjct: 365 RATRQPIEEMQLPSVDAVN 383


>gi|28958131|gb|AAH47455.1| DDX4 protein [Homo sapiens]
          Length = 690

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 508 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAA 567

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 568 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 611


>gi|262231852|ref|NP_001160005.1| probable ATP-dependent RNA helicase DDX4 isoform 3 [Homo sapiens]
          Length = 704

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 522 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAA 581

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 582 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 625


>gi|255307197|ref|ZP_05351368.1| ATP-dependent RNA helicase [Clostridium difficile ATCC 43255]
          Length = 497

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 18/137 (13%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK     L   + +    +R +H+++    RI +I+D +  KF++LV  ++   G+ I +
Sbjct: 254 TKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILVSSDVASRGIHIDD 313

Query: 651 CGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNS-KVIL--------YADTITKSIQL 699
             LV   D   DKE +       I  IGR  R  NS K I         Y + I   I  
Sbjct: 314 ISLVINYDVPQDKENY-------IHRIGRTGRKGNSGKAITIVTEKDEKYIENIETYIGY 366

Query: 700 AIDETTRRREKQLEHNK 716
            I+E T   + ++ H K
Sbjct: 367 KINELTDIEQSRITHGK 383


>gi|241949263|ref|XP_002417354.1| conserved hypothetical protein [Candida dubliniensis CD36]
 gi|223640692|emb|CAX45002.1| conserved hypothetical protein [Candida dubliniensis CD36]
          Length = 654

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           ++ I  +Y+  E   +ER  I+ D + GKF VL  + +  EG DIP    + +       
Sbjct: 293 QQGIDAQYVLGETSRIEREFIVEDFKQGKFPVLCNVGVFTEGTDIPNIDSIILARPT--- 349

Query: 664 FLRSKTSLIQTIGRAAR 680
              S++ +IQ IGR  R
Sbjct: 350 --MSQSLMIQMIGRGLR 364


>gi|217963906|ref|YP_002349584.1| ATP-dependent DNA helicase, recQ [Listeria monocytogenes HCC23]
 gi|217333176|gb|ACK38970.1| ATP-dependent DNA helicase, recQ [Listeria monocytogenes HCC23]
 gi|307571524|emb|CAR84703.1| ATP-dependent DNA helicase, putative [Listeria monocytogenes L99]
          Length = 467

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 28/184 (15%)

Query: 523 PTTIVVSATPG---------SWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVY 572
           P T+V++AT              L  C+ II   + RP   +   VE   S + + E +Y
Sbjct: 164 PVTMVLTATATKKVRVDILTQLHLTDCEQIIYS-VNRPN--ISLQVEKFSSQQLKKERLY 220

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLG 631
           + +      G+   +   +K++AE +   L E   +RV Y H ++ T +RI I +    G
Sbjct: 221 ELVRKLQTPGI---IYFSSKKLAESIAHELSEIAELRVAYYHGDMDTEDRIIIQQQFVYG 277

Query: 632 KFDVLVGINLLREGLDIPECGLVA--ILDADKEGFLRSKTSLIQTIGRAARNVNSKV--I 687
           + D++   +    G+D  +   V    + AD E +L       Q IGRA R+    V  +
Sbjct: 278 QLDIICATSAFGMGIDKADIRFVIHYHMPADLEAYL-------QEIGRAGRDGKDSVAIL 330

Query: 688 LYAD 691
           LYA+
Sbjct: 331 LYAN 334


>gi|195439780|ref|XP_002067737.1| GK12550 [Drosophila willistoni]
 gi|194163822|gb|EDW78723.1| GK12550 [Drosophila willistoni]
          Length = 800

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 16/129 (12%)

Query: 567 QVEDVYDE-------INL----AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           Q+ DV DE       INL    +A+   + ++ V TK+  +++T  +  +  R   +H +
Sbjct: 355 QIVDVCDESEKIVKLINLLTDISAESETKTIIFVETKKRVDEITRNISRQGWRACAIHGD 414

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
               ER  ++   R G+  +LV  ++   GLD+ +   V   D     +  +    +  I
Sbjct: 415 KSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYD-----YPSNSEDYVHRI 469

Query: 676 GRAARNVNS 684
           GR  R+ N+
Sbjct: 470 GRTGRSNNT 478


>gi|149019928|gb|EDL78076.1| eukaryotic translation initiation factor 4A2, isoform CRA_c [Rattus
           norvegicus]
 gi|149019929|gb|EDL78077.1| eukaryotic translation initiation factor 4A2, isoform CRA_c [Rattus
           norvegicus]
          Length = 233

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 155 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 214

Query: 651 CGLV 654
             LV
Sbjct: 215 VSLV 218


>gi|118366889|ref|XP_001016660.1| P68-like protein, putative [Tetrahymena thermophila]
 gi|89298427|gb|EAR96415.1| P68-like protein, putative [Tetrahymena thermophila SB210]
          Length = 699

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 7/138 (5%)

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +D  VEI   ++Q  D   EI     +  + ++   TK+  +DL++ L   NIR   +H 
Sbjct: 433 IDQQVEIID-KSQKYDRVKEILSTMTRSDKTIIFTQTKKDCDDLSKALQTDNIRNICIHG 491

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +    +R +++   + G+ + L+  ++   GLD+ +  LV   D     F +     +  
Sbjct: 492 DKSQRDRDKVMDLFKTGRVNTLIATDVASRGLDVKDIKLVINYD-----FPKQIEDYVHR 546

Query: 675 IGRAAR-NVNSKVILYAD 691
           +GR  R     K I + D
Sbjct: 547 VGRTGRAGAQGKAISFLD 564


>gi|68488835|ref|XP_711764.1| hypothetical protein CaO19.10316 [Candida albicans SC5314]
 gi|68488880|ref|XP_711740.1| hypothetical protein CaO19.2798 [Candida albicans SC5314]
 gi|46433062|gb|EAK92518.1| hypothetical protein CaO19.2798 [Candida albicans SC5314]
 gi|46433087|gb|EAK92542.1| hypothetical protein CaO19.10316 [Candida albicans SC5314]
          Length = 655

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           ++ I  +Y+  E   +ER  I+ D + GKF VL  + +  EG DIP    + +       
Sbjct: 293 QQGIDAQYVLGETSKIEREFIVEDFKQGKFPVLCNVGVFTEGTDIPNIDSIILARPT--- 349

Query: 664 FLRSKTSLIQTIGRAARNVNSKV---ILYADTITKSIQLAIDETTRRREKQLEHNKKH 718
              S++ +IQ IGR  R    K    ++    ITKS  LA+  T    E Q +  +K+
Sbjct: 350 --MSQSLMIQMIGRGLRLHKEKSHCHVIDLVGITKS-SLALKATLSGEEPQEQEKRKY 404


>gi|319949507|ref|ZP_08023558.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
 gi|319436821|gb|EFV91890.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
          Length = 499

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ L + L ER  RV  +H ++    R + ++  R G  DVLV  ++   G+D+
Sbjct: 281 TKRTAQKLADDLAERGFRVGAIHGDLGQGAREKSLKAFRSGDVDVLVATDVAARGIDV 338


>gi|313246316|emb|CBY35237.1| unnamed protein product [Oikopleura dioica]
          Length = 653

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q+ L I+ T  TK+ A+ L  +L+ER  +   +H +    ER E +   + G+  +LV 
Sbjct: 445 GQEMLTIVFTE-TKKGADYLDHFLHERGYQSTCIHGDRNQQEREEAVHLFKSGQTPILVA 503

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
             +   GLDIP    V   D   E         +  IGR  R  N+
Sbjct: 504 TAVAARGLDIPNVRHVINFDLPSE-----IDEYVHRIGRTGRAGNT 544


>gi|242024557|ref|XP_002432694.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212518164|gb|EEB19956.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 407

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 266 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSCMHGDMPQKERDAIMKEFR 320

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 321 TGLSRVLITTDVWARGIDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 366


>gi|205353050|ref|YP_002226851.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272831|emb|CAR37757.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628129|gb|EGE34472.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 124/303 (40%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E   +
Sbjct: 130 --------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQ-PY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + +    
Sbjct: 181 RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWR-DTF 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E++++     A+ + Q+++         G+  +   Y + L      EP P LF Y P +
Sbjct: 236 EVKRD-----AEHIYQQVS--------KGTLPAGIEYWQPLFF---SEPLPPLFSYFPAN 279

Query: 469 SLL 471
           +L+
Sbjct: 280 TLV 282



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|241204637|ref|YP_002975733.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858527|gb|ACS56194.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 701

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 153 QPAAIAQLLKGIHSREK-VQLLLGVTGSGKTF----TMAKVIEAMQRPAIVMAPNKILAA 207
           Q  AIA++LK +   E+ ++LL G  GSGKT      MA VIE+  + A++MAP +ILA 
Sbjct: 278 QNEAIAEVLKDMAGNERMLRLLQGDVGSGKTLVALMAMAAVIESGGQ-AVLMAPTEILAR 336

Query: 208 QLYSEFKNF 216
           Q ++    F
Sbjct: 337 QHHATISKF 345


>gi|156050031|ref|XP_001590977.1| hypothetical protein SS1G_07601 [Sclerotinia sclerotiorum 1980]
 gi|154692003|gb|EDN91741.1| hypothetical protein SS1G_07601 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 673

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LT    E  I  +++  +   +ER   +   R G+F VLV   +  EG DIP    V + 
Sbjct: 314 LTNKFREHGIDAQFVTGDTPKIERSTRLDAFRNGEFPVLVNCGVFTEGTDIPNIDCVLLA 373

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
              K     S+  L+Q IGR  R
Sbjct: 374 RPTK-----SRNLLVQMIGRGMR 391


>gi|88811932|ref|ZP_01127185.1| ATP-dependent DNA helicase RecG [Nitrococcus mobilis Nb-231]
 gi|88790816|gb|EAR21930.1| ATP-dependent DNA helicase RecG [Nitrococcus mobilis Nb-231]
          Length = 697

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 8/107 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R+ E L E      +RV  +H  +K +E+  ++     G+  +LV   ++  G+D+P  
Sbjct: 513 QRLRESLPE------LRVGLVHGRMKGVEKEAVMAGFEAGELQLLVATTVIEVGVDVPNA 566

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            L+ I +A++ G L     L   IGR A   +S V++Y   ++++ Q
Sbjct: 567 SLMIIENAERFG-LAQLHQLRGRIGRGA-TASSCVLMYHGPLSQTAQ 611


>gi|68480950|ref|XP_715628.1| hypothetical protein CaO19.10436 [Candida albicans SC5314]
 gi|46437260|gb|EAK96610.1| hypothetical protein CaO19.10436 [Candida albicans SC5314]
          Length = 1187

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EII+  + G F++LV  ++  EGLDI E  L+   D+       S    IQ +GR  R  
Sbjct: 583 EIIKKFKKGVFNILVATSIGEEGLDIGEVDLIICYDS-----TSSPIKNIQRMGRTGRKR 637

Query: 683 NSKVIL 688
           + KV++
Sbjct: 638 DGKVLM 643


>gi|312864925|ref|ZP_07725155.1| primosomal protein N' [Streptococcus downei F0415]
 gi|311099545|gb|EFQ57759.1| primosomal protein N' [Streptococcus downei F0415]
          Length = 794

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+++   GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 587 KILQEFGQGKADILLGTQMIAKGLDFPNVTLVGVLNADTSLNLPDFRSAERTFQLLTQVA 646

Query: 676 GRAAR 680
           GRA R
Sbjct: 647 GRAGR 651


>gi|261824923|pdb|3HJH|A Chain A, A Rigid N-Terminal Clamp Restrains The Motor Domains Of
           The Bacterial Transcription-Repair Coupling Factor
          Length = 483

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 231 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282


>gi|254819273|ref|ZP_05224274.1| hypothetical protein MintA_05066 [Mycobacterium intracellulare ATCC
           13950]
          Length = 1200

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 188 VIEAMQR--PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           V  A+ R  P +V+      A  L +E +  F  +AV  F S+ +    E   P  DT  
Sbjct: 34  VASALARLGPLLVVTATGREADDLTAELRGVF-GDAVAVFPSW-ETLPHERLSPGVDTVG 91

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG----IGSVESYSQMIVQLKIGD 301
            + + +     R+ H     L      +V ++ S +      +G +E      V L +G 
Sbjct: 92  ARLTVLR----RLAHPDDARLGPPLQVVVTAARSLLQPMTPQLGLIEP-----VTLSVGA 142

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
            VE + +++ LV+  Y R D+   RG F V G  +++FP   E    R+  +G+++ E+ 
Sbjct: 143 EVEFEGVIARLVELAYTRVDMVGRRGEFAVRGGILDVFPPTAEHPV-RIEFWGDEVSEMR 201

Query: 362 EF 363
            F
Sbjct: 202 MF 203


>gi|297205610|ref|ZP_06923006.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           jensenii JV-V16]
 gi|297150188|gb|EFH30485.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           jensenii JV-V16]
          Length = 461

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++ +YL ++ +RV  +H  +   ER   +R +R G F  +V  +L   G+DI  
Sbjct: 262 TKQKVDEVAKYLQDQGLRVAKIHGGITERERKRTLRLVRQGDFQYVVATDLAARGIDIDG 321

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             LV   +  K+        +I  IGR  RN
Sbjct: 322 VSLVINYELPKD-----LEFVIHRIGRTGRN 347


>gi|225869162|ref|YP_002745110.1| ATP-dependent DNA helicase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702438|emb|CAX00322.1| ATP-dependent DNA helicase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 671

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L +Y ++ +  V  MH ++K  ++  I++  +  + DVLV   ++  G+++P   ++ I
Sbjct: 487 ELKDY-FKASASVALMHGKMKADDKEMIMQRFKAKEIDVLVSTTVIEVGVNVPNATIMLI 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           ++AD+ G     + L Q  GR  R    S  IL AD  T S
Sbjct: 546 MNADRFGL----SQLHQLRGRVGRGSKQSYAILVADPKTDS 582


>gi|229816677|ref|ZP_04446965.1| hypothetical protein COLINT_03725 [Collinsella intestinalis DSM
           13280]
 gi|229807729|gb|EEP43543.1| hypothetical protein COLINT_03725 [Collinsella intestinalis DSM
           13280]
          Length = 984

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A +L +   +R  +   +       ER E+IR L  G+ + +  +N+L EG+DIP    +
Sbjct: 478 ARELAKQFTQRGYKSEAIDGNDSNAERDEVIRKLESGELEYIFSVNILNEGVDIPAVNQI 537

Query: 655 AILDADKEGFLRSKTSL--IQTIGRAARNVNSK 685
            +L        R+++S+  +Q +GR  R  ++K
Sbjct: 538 IMLR-------RTESSIVFVQQLGRGLRKADNK 563


>gi|195380844|ref|XP_002049171.1| GJ20897 [Drosophila virilis]
 gi|194143968|gb|EDW60364.1| GJ20897 [Drosophila virilis]
          Length = 1722

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 58/111 (52%), Gaps = 15/111 (13%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G+ ++++  ++L EG+D+  C  V ILD      +++    +QT GR AR+ +S
Sbjct: 450 IQQFRDGEANMMICSSVLEEGIDVQACNYVIILDP-----IKTFNMYVQTKGR-ARSKDS 503

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
             IL++  +         E  +  E+  ++ K H    + +K++++E  DP
Sbjct: 504 SFILFSSEL---------EQQKISEQIHQYRKAHAEIGEYLKDRVLERTDP 545


>gi|184154940|ref|YP_001843280.1| phage helicase [Lactobacillus fermentum IFO 3956]
 gi|183226284|dbj|BAG26800.1| phage helicase [Lactobacillus fermentum IFO 3956]
 gi|299782970|gb|ADJ40968.1| Phage helicase [Lactobacillus fermentum CECT 5716]
          Length = 448

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
            I+  ++ S+  + ER +I+ D + GK  VL   +L+ EG ++P+C  V +L
Sbjct: 239 GIKAAHVDSKTPSGERSKIMVDFKAGKIMVLCNCDLISEGFNVPDCSCVVLL 290


>gi|204930833|ref|ZP_03221706.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320292|gb|EDZ05496.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 124/303 (40%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E   +
Sbjct: 130 --------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQ-PY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + +    
Sbjct: 181 RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWR-DTF 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E++++     A+ + Q+++         G+  +   Y + L      EP P LF Y P +
Sbjct: 236 EVKRD-----AEHIYQQVS--------KGTLPAGIEYWQPLFF---SEPLPPLFSYFPAN 279

Query: 469 SLL 471
           +L+
Sbjct: 280 TLV 282



 Score = 37.4 bits (85), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|70929228|ref|XP_736707.1| helicase [Plasmodium chabaudi chabaudi]
 gi|56511470|emb|CAH85853.1| helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 158

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RI++ V TKR A+ +T+ L    +    +H + K  ER  ++ D + GK  +L+  ++  
Sbjct: 8   RIIVFVETKRSADFITKALRLEGMPALCIHGDKKQDERRWVLNDFKTGKSPILIATDVAS 67

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLDI +   V   D     F       +  IGR  R
Sbjct: 68  RGLDIKDVKFVINYD-----FPNQIEDYVHRIGRTGR 99


>gi|328855473|gb|EGG04599.1| hypothetical protein MELLADRAFT_78286 [Melampsora larici-populina
           98AG31]
          Length = 646

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           QG   L+ V TKRMA+ L  +L   N     +H +    ER   +   R  +  ++V   
Sbjct: 420 QGGLTLVFVETKRMADMLEGFLVSSNFAATSIHGDRTQRERERALETFRSSRTPIMVATA 479

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +   GLDIP    V   D   +         +  IGR  R  N+ V
Sbjct: 480 VAARGLDIPNVTHVVNYDLPSD-----IDDYVHRIGRTGRAGNTGV 520


>gi|313635144|gb|EFS01470.1| transcription-repair-coupling factor [Listeria seeligeri FSL
           N1-067]
          Length = 258

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 46/231 (19%), Positives = 94/231 (40%), Gaps = 15/231 (6%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNSLDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   L+     IV+ 
Sbjct: 74  MEADRLFLY-------------PADELISSELSISSPELRGQRVEALDFLISGKPGIVIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  V  +    + +  G+ ++ + L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPEVLRQQLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +
Sbjct: 181 IDIYPIT-EEFPIRIELFDTEVDSLRFFDVETQRSTSRVEEFRLLPATEII 230


>gi|307208568|gb|EFN85902.1| Eukaryotic initiation factor 4A-III [Harpegnathos saltator]
          Length = 403

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R
Sbjct: 262 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFR 316

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 317 SGASRVLITTDVWARGIDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 362


>gi|289648570|ref|ZP_06479913.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 1150

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 61/307 (19%), Positives = 120/307 (39%), Gaps = 55/307 (17%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            + V   + ++ +   +   
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELEHG----------VLAVPITTALHRLAPTKFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPFRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P T + I  VE++++                       L  R   L+
Sbjct: 184 LFDDEIETLRTFDPDTQRSIDKVESVRL-----------------------LPAREFPLQ 220

Query: 412 KEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           KE       R  +R   D       + L +  +   IE Y          E   TLF+Y+
Sbjct: 221 KEEVTRFKARFRERFDVDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYL 275

Query: 466 PEDSLLF 472
           P+D+ +F
Sbjct: 276 PQDTQVF 282



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VL+   ++  G+D+P  
Sbjct: 826 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 884 NTIIIERADKFGL----AQLHQLRGRVGRS 909


>gi|302411438|ref|XP_003003552.1| helicase C-terminal domain-containing protein [Verticillium
           albo-atrum VaMs.102]
 gi|261357457|gb|EEY19885.1| helicase C-terminal domain-containing protein [Verticillium
           albo-atrum VaMs.102]
          Length = 1128

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  ++I  +   R G+++VLV  ++  EGLDI +  L+   DA       S   ++Q +
Sbjct: 572 MKQAQQIATVEKFRTGEYNVLVATSIGEEGLDIGQVDLIVCYDASS-----SPIRMLQRM 626

Query: 676 GRAARNVNSKVIL 688
           GR  R     V+L
Sbjct: 627 GRTGRKREGNVVL 639


>gi|257068997|ref|YP_003155252.1| RecG-like helicase [Brachybacterium faecium DSM 4810]
 gi|256559815|gb|ACU85662.1| RecG-like helicase [Brachybacterium faecium DSM 4810]
          Length = 739

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 4/95 (4%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A  L E       R+  +H  +   E+ EI+  +  G+ D+LV   ++  G+D+P   ++
Sbjct: 545 ARRLAERAELAGARLGVLHGRLTGEEKQEIMGQMVRGEIDLLVSTTVIEVGVDVPNASVM 604

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            ILDA++ G     + L Q  GR  R  ++ +  +
Sbjct: 605 IILDAERFGV----SQLHQLRGRVGRGEHAGIAFF 635


>gi|261377774|ref|ZP_05982347.1| transcription-repair coupling factor [Neisseria cinerea ATCC 14685]
 gi|269146063|gb|EEZ72481.1| transcription-repair coupling factor [Neisseria cinerea ATCC 14685]
          Length = 1134

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 87/208 (41%), Gaps = 17/208 (8%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  +   A +L + +  F PH+    F+  ++    E + P  D   E+ S++ +   
Sbjct: 37  VVLTQDAEQALRLQTAWLFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ--- 92

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            ++  A        D + V   + +  +  V   +     LK G +++   L S LV   
Sbjct: 93  -IKSGAA-------DVLFVPVATAMQKLPPVLFLTGRTFWLKTGQTLDIGRLKSDLVDAG 144

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  
Sbjct: 145 YNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVSE 203

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELK 404
           I++     +    PT + A K  +   +
Sbjct: 204 IRLLPAHEF----PTDSEAQKIFRSRFR 227



 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 825 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 881

Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
              L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 882 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 917


>gi|225181200|ref|ZP_03734646.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
 gi|225168169|gb|EEG76974.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
          Length = 470

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 5/94 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L +R      +H ++    R  ++R  + G  D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELYEALNKRGYSAEGIHGDMTQARRDSVMRQFKDGSIDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            G+  + + D     +   S +  IGR  R  N+
Sbjct: 307 TGVTHVYNFD---IPQDPESYVHRIGRTGRAGNT 337


>gi|156937309|ref|YP_001435105.1| Reverse gyrase [Ignicoccus hospitalis KIN4/I]
 gi|156566293|gb|ABU81698.1| Reverse gyrase [Ignicoccus hospitalis KIN4/I]
          Length = 1259

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 9/103 (8%)

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           P G+ +    +  + ++  DV + +    + GL  +   L  + AE++ E L     R  
Sbjct: 315 PGGVGEGVRNVVDSYSRSSDVVEVVKKLGKGGLVFVPADLGAKGAEEVAEAL-----RAA 369

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGI----NLLREGLDIP 649
            + +EV T ERI +I+D   G+ +VLVG+     +L  G+D+P
Sbjct: 370 GVAAEVATSERIGVIKDFEEGRVEVLVGVATHYGVLVRGIDLP 412


>gi|158312770|ref|YP_001505278.1| DEAD/DEAH box helicase domain-containing protein [Frankia sp.
           EAN1pec]
 gi|158108175|gb|ABW10372.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec]
          Length = 671

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL ++  V T+R A+ + E L  R      +H ++   +R + +R  R GK DVLV
Sbjct: 345 AESRGLAMVF-VRTRRTADKVAEDLARRGFAAAPVHGDLGQGQREQALRAFRAGKVDVLV 403

Query: 638 GINLLREGLDIPECGLVAILD----ADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             ++   G+D+   G+  +++     D+  +L         IGR  R   S V +
Sbjct: 404 ATDVAARGIDV--GGVTHVVNYQCPEDEHAYL-------HRIGRTGRAGGSGVAV 449


>gi|67619527|ref|XP_667652.1| dead box RNA helicase [Cryptosporidium hominis TU502]
 gi|54658801|gb|EAL37417.1| dead box RNA helicase [Cryptosporidium hominis]
          Length = 480

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 10/105 (9%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER----NIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +QG +I+L  L    ++D  + L+++    N+ V  +HS++  ++R  II+  R GK  +
Sbjct: 328 KQG-KIMLPTLVFTNSKDDAQRLFKKLMYDNLIVEAIHSDMPKVKRDNIIQRFRTGKIWI 386

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           L+  +L+  G+D      V   D     F  S ++ I  +GR  R
Sbjct: 387 LICTDLMARGVDFKNVSCVVNYD-----FPHSPSNYIHRVGRCGR 426


>gi|68481063|ref|XP_715573.1| hypothetical protein CaO19.2919 [Candida albicans SC5314]
 gi|74679884|sp|Q5A1A0|MPH1_CANAL RecName: Full=ATP-dependent DNA helicase MPH1
 gi|46437201|gb|EAK96552.1| hypothetical protein CaO19.2919 [Candida albicans SC5314]
          Length = 1187

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EII+  + G F++LV  ++  EGLDI E  L+   D+       S    IQ +GR  R  
Sbjct: 583 EIIKKFKKGVFNILVATSIGEEGLDIGEVDLIICYDS-----TSSPIKNIQRMGRTGRKR 637

Query: 683 NSKVIL 688
           + KV++
Sbjct: 638 DGKVLM 643


>gi|313235130|emb|CBY25002.1| unnamed protein product [Oikopleura dioica]
          Length = 653

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q+ L I+ T  TK+ A+ L  +L+ER  +   +H +    ER E +   + G+  +LV 
Sbjct: 445 GQEMLTIVFTE-TKKGADYLDHFLHERGYQSTCIHGDRNQQEREEAVHLFKSGQTPILVA 503

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
             +   GLDIP    V   D   E         +  IGR  R  N+
Sbjct: 504 TAVAARGLDIPNVRHVINFDLPSE-----IDEYVHRIGRTGRAGNT 544


>gi|308177222|ref|YP_003916628.1| ATP-dependent DNA helicase RecG [Arthrobacter arilaitensis Re117]
 gi|307744685|emb|CBT75657.1| putative ATP-dependent DNA helicase RecG [Arthrobacter arilaitensis
           Re117]
          Length = 729

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            IR + +HS++ T ++ E +     G+ DVL+   ++  G+D+    L+ I+DA++ G  
Sbjct: 545 GIRTQTLHSQLDTTDKQETMDSFARGEIDVLISTTVIEVGVDVHNATLMVIMDAERFGI- 603

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R 
Sbjct: 604 ---SQLHQLRGRVGRG 616


>gi|238063276|ref|ZP_04607985.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           sp. ATCC 39149]
 gi|237885087|gb|EEP73915.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           sp. ATCC 39149]
          Length = 735

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  +   E+  ++R    G+ DVLV   ++  G+++P   ++ +LDAD+ G  
Sbjct: 551 GLRIGILHGRLPADEKDAVMRAFADGELDVLVATTVVEVGVNVPNATVMIVLDADRFGV- 609

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R   + + L
Sbjct: 610 ---SQLHQLRGRVGRGSAAGLCL 629


>gi|257064977|ref|YP_003144649.1| DNA/RNA helicase, superfamily II [Slackia heliotrinireducens DSM
           20476]
 gi|256792630|gb|ACV23300.1| DNA/RNA helicase, superfamily II [Slackia heliotrinireducens DSM
           20476]
          Length = 657

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 39/79 (49%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           + G R+++   TK  A++ T  L +  I    +H++    +R   +   R GK  V+V  
Sbjct: 245 KGGFRVIVFTKTKGGADNCTRRLCKIGIGAEAIHADRSQAQRQRALERFREGKTHVIVAT 304

Query: 640 NLLREGLDIPECGLVAILD 658
           ++L  G+D+PE   V   D
Sbjct: 305 DVLARGIDVPEVDYVVNYD 323


>gi|229820092|ref|YP_002881618.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
 gi|229566005|gb|ACQ79856.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
           12333]
          Length = 748

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            + +  +H  +    +   + D   GK  VLV   ++  G+D+PE  ++A+LDAD+ G  
Sbjct: 564 GVEIGMLHGRLTPDVKDAAMADFSSGKVPVLVTTTVIEVGVDVPEATVMAVLDADRFGL- 622

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R  +  V L
Sbjct: 623 ---SQLHQLRGRVGRGSDPAVCL 642


>gi|168822320|ref|ZP_02834320.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205341236|gb|EDZ28000.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320086344|emb|CBY96117.1| Transcription-repair-coupling factor TRCF; ATP-dependent helicase
           mfd [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 124/303 (40%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E   +
Sbjct: 130 --------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQ-PY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + +    
Sbjct: 181 RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWR-DTF 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E++++     A+ + Q+++         G+  +   Y + L      EP P LF Y P +
Sbjct: 236 EVKRD-----AEHIYQQVS--------KGTLPAGIEYWQPLFF---SEPLPPLFSYFPAN 279

Query: 469 SLL 471
           +L+
Sbjct: 280 TLV 282



 Score = 37.4 bits (85), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|168233095|ref|ZP_02658153.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194470858|ref|ZP_03076842.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194457222|gb|EDX46061.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205332729|gb|EDZ19493.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 124/303 (40%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E   +
Sbjct: 130 --------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQ-PY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + +    
Sbjct: 181 RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWR-DTF 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E++++     A+ + Q+++         G+  +   Y + L      EP P LF Y P +
Sbjct: 236 EVKRD-----AEHIYQQVS--------KGTLPAGIEYWQPLFF---SEPLPPLFSYFPAN 279

Query: 469 SLL 471
           +L+
Sbjct: 280 TLV 282


>gi|163782095|ref|ZP_02177094.1| ATP-dependent DNA helicase RecG [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882627|gb|EDP76132.1| ATP-dependent DNA helicase RecG [Hydrogenivirga sp. 128-5-R1-1]
          Length = 670

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 8/92 (8%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKTFT-----MAKVIEA 191
           I  FQ +  +  +G Q   + ++L  +     + +LL G  GSGKT       +A V + 
Sbjct: 228 IAEFQSKLSFKLTGAQLRVLREILTDMGREHPMNRLLQGDVGSGKTVVAIGAALAAVKKG 287

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            Q    VM P +ILA Q Y +FK FF    VE
Sbjct: 288 YQ--VAVMVPTEILAHQHYRKFKEFFEKEGVE 317


>gi|156936986|ref|YP_001434782.1| DEAD/DEAH box helicase [Ignicoccus hospitalis KIN4/I]
 gi|156565970|gb|ABU81375.1| DEAD/DEAH box helicase domain protein [Ignicoccus hospitalis
           KIN4/I]
          Length = 943

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 9/112 (8%)

Query: 586 LLTVLTKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           L+ V T+  AE L E L +   ++V   HS +    R EI ++L+ GK DV++    L  
Sbjct: 257 LVFVNTRYAAERLHEELSKIEGLKVEVHHSSISKEIRQEIEKNLKDGKLDVVIATKTLEL 316

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NVNSKVILYADTI 693
           G+DI +   V +          S  SL+Q +GRA      V+  VI+  D I
Sbjct: 317 GIDISDLNKVILFKPPG-----SVASLLQRVGRAGHKLGGVSRGVIITTDEI 363


>gi|148709265|gb|EDL41211.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Mus musculus]
          Length = 633

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 446 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 505

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 506 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 554

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 555 VLMDLKALLLEAKQKVPP 572


>gi|126290301|ref|XP_001367933.1| PREDICTED: similar to Dicer protein [Monodelphis domestica]
          Length = 1923

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           EV+  ++ E++R  R  + ++L+  +++ EG+DIP+C LV   D   E       S +Q+
Sbjct: 495 EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPME-----YRSYVQS 549

Query: 675 IGRAARNVNSKVILYADTITKSIQ 698
            GRA   +++ ++L      KS +
Sbjct: 550 KGRARAPISNYIMLADSDKIKSFE 573


>gi|74191640|dbj|BAE30391.1| unnamed protein product [Mus musculus]
          Length = 622

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 495 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 543

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 544 VLMDLKALLLEAKQKVPP 561


>gi|326534262|dbj|BAJ89481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G + ++   TKR A+ L  Y   R+   + +H ++   +R   +   R G+F++LV  ++
Sbjct: 331 GGKCIVFTQTKREADRLA-YAMGRSYACQALHGDISQNQRERTLSGFRDGRFNILVATDV 389

Query: 642 LREGLDIPECGLV 654
              GLDIP   LV
Sbjct: 390 AARGLDIPNVDLV 402


>gi|330798075|ref|XP_003287081.1| hypothetical protein DICPUDRAFT_151154 [Dictyostelium purpureum]
 gi|325082917|gb|EGC36384.1| hypothetical protein DICPUDRAFT_151154 [Dictyostelium purpureum]
          Length = 565

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 6/98 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           R L+  +TK+ AE L+++L +  ++R+  +H +     R  I+   + GK D+++  ++ 
Sbjct: 379 RTLIFTMTKKGAETLSDFLGKNGDVRIGCLHGDKPQQTRSNIVNRFKEGKLDMVIATDIA 438

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             GLDI       I D        +  + +  IGR AR
Sbjct: 439 SRGLDIKH-----ITDVINFSLPPNCETYVHRIGRTAR 471


>gi|289663283|ref|ZP_06484864.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 640

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA RN ++  IL+     K +  +I+
Sbjct: 311 GLDVERVSHVLNYDIPYDTESYVHR----IGRTGRAGRNGDA--ILFVTPREKGMLRSIE 364

Query: 703 ETTRR 707
             TR+
Sbjct: 365 RATRQ 369


>gi|295689522|ref|YP_003593215.1| transcription-repair coupling factor [Caulobacter segnis ATCC
           21756]
 gi|295431425|gb|ADG10597.1| transcription-repair coupling factor [Caulobacter segnis ATCC
           21756]
          Length = 1155

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 78/216 (36%), Gaps = 27/216 (12%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY---- 228
           L G         MA +  A       +A +   A       K F P        S+    
Sbjct: 17  LAGAPEGFDALVMADIARARGGLTAFVARDTARAGAFIDSLKFFAPEIEAVLLPSWDCLP 76

Query: 229 YDYYQPEAYVP--RTDTYIEKESSINEQIDRMRHSATRSLLER---NDCIVVSSVSCIYG 283
           YD   P A V   R  T       + E    +   A  +LL+R    D ++ +S S    
Sbjct: 77  YDRIGPSASVSATRMSTLSRLARGLGESKPAILVIAAHALLQRVPTKDVLLRASYSA--- 133

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
                         K+G  V+ K+L +      Y R      RG F + G  I+++P   
Sbjct: 134 --------------KVGGVVDIKDLETYFAVNGYARASTVSERGEFAIRGGVIDVYPPAA 179

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           E+   R+ +FG+ +E I  F P T +  + ++ I +
Sbjct: 180 EEPV-RLDLFGDTLESIRAFDPETQRSTKQLKEIDL 214



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 17/186 (9%)

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ----- 580
           + ++ATP    L+     I E  I  T    PPV+  + RT +   +D + L        
Sbjct: 758 LTLTATPIPRTLQMALSGIREMSIIAT----PPVDRLAVRTYISP-FDPVTLREALLREK 812

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G +    V   +  ED+ ++L  +   V+Y+  H ++   +  +++     G++DVL+
Sbjct: 813 YRGGQSYYVVPRIKDLEDIEKFLRTQVPEVKYVVGHGQMSATQLEDVMTAFYEGQYDVLL 872

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + +  AD  G       L Q  GR  R+           + KS+
Sbjct: 873 ATTIVESGLDIPSANTLIVHRADMFGL----AQLYQIRGRVGRSKARAYAYLTTPVEKSL 928

Query: 698 QLAIDE 703
            L+ ++
Sbjct: 929 TLSAEK 934


>gi|260809351|ref|XP_002599469.1| hypothetical protein BRAFLDRAFT_122755 [Branchiostoma floridae]
 gi|229284748|gb|EEN55481.1| hypothetical protein BRAFLDRAFT_122755 [Branchiostoma floridae]
          Length = 623

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  +DLT  +         +H +    ER  ++   R GK  +LV  ++  
Sbjct: 359 KTIIFVETKRRVDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNQFRSGKAPILVATDVAS 418

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            GLD+ +   V   D     +  S    +  IGR AR+
Sbjct: 419 RGLDVSDIKFVINFD-----YPNSAEDYVHRIGRTARS 451


>gi|207857277|ref|YP_002243928.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206709080|emb|CAR33413.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 124/303 (40%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E   +
Sbjct: 130 --------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQ-PY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + +    
Sbjct: 181 RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWR-DTF 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E++++     A+ + Q+++         G+  +   Y + L      EP P LF Y P +
Sbjct: 236 EVKRD-----AEHIYQQVS--------KGTLPAGIEYWQPLFF---SEPLPPLFSYFPAN 279

Query: 469 SLL 471
           +L+
Sbjct: 280 TLV 282



 Score = 37.4 bits (85), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|168467175|ref|ZP_02701017.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195630325|gb|EDX48951.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 124/303 (40%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E   +
Sbjct: 130 --------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQ-PY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + +    
Sbjct: 181 RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWR-DTF 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E++++     A+ + Q+++         G+  +   Y + L      EP P LF Y P +
Sbjct: 236 EVKRD-----AEHIYQQVS--------KGTLPAGIEYWQPLFF---SEPLPPLFSYFPAN 279

Query: 469 SLL 471
           +L+
Sbjct: 280 TLV 282



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|168239121|ref|ZP_02664179.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194738344|ref|YP_002114221.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194713846|gb|ACF93067.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288100|gb|EDY27487.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 124/303 (40%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E   +
Sbjct: 130 --------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQ-PY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + +    
Sbjct: 181 RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWR-DTF 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E++++     A+ + Q+++         G+  +   Y + L      EP P LF Y P +
Sbjct: 236 EVKRD-----AEHIYQQVS--------KGTLPAGIEYWQPLFF---SEPLPPLFSYFPAN 279

Query: 469 SLL 471
           +L+
Sbjct: 280 TLV 282



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|146197837|dbj|BAF57631.1| DEAD box polypeptide 48 protein [Dugesia japonica]
          Length = 376

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      ++++   TKR  E LT+ + E N  V  +H ++   ER EI R  R
Sbjct: 234 DIYDTVTVT-----QVVIFCNTKRKVEWLTDKMRENNFTVSSIHGDMPQGERDEITRQFR 288

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +  VL+  ++   G+D+    LV   D        ++   I  IGR+ R
Sbjct: 289 ALETRVLITTDVWARGIDVQHVSLVINYD-----LPNNRELYIHRIGRSGR 334


>gi|73953311|ref|XP_851746.1| PREDICTED: similar to Nucleolar RNA helicase II (Nucleolar RNA
           helicase Gu) (RH II/Gu) (DEAD-box protein 21) [Canis
           familiaris]
          Length = 784

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK+ A++L++ +  R    + +H ++   +R   ++  R G F VLV  N+  
Sbjct: 441 RTIIFCETKKEAQELSQNVSIRQ-DAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAA 499

Query: 644 EGLDIPECGLV 654
            GLDIPE  LV
Sbjct: 500 RGLDIPEVDLV 510


>gi|298207099|ref|YP_003715278.1| transcription-repair coupling factor [Croceibacter atlanticus
           HTCC2559]
 gi|83849733|gb|EAP87601.1| transcription-repair coupling factor [Croceibacter atlanticus
           HTCC2559]
          Length = 1126

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 14/161 (8%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLT----VLTKRMAEDLTEYLYERNIRVRYMH 613
           PVE    R   E + D +    Q+G ++          K +A  +   + +  I + +  
Sbjct: 742 PVETNVIRFSEESIRDAVQYEIQRGGQVYFVHNRIENIKEVAGMIQRVVPDAKIGIGHGQ 801

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            E K LE  +++     G FDVLV   ++  GLD+P    + I +A+  G     + L Q
Sbjct: 802 MEGKKLE--QLMLSFMNGDFDVLVSTTIIESGLDVPNANTIFINNANNFGL----SDLHQ 855

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
             GR  R+ N K   Y  T   S   A+ +  R+R   LE 
Sbjct: 856 MRGRVGRS-NKKAFCYFITPPYS---AMTDDARKRITALEQ 892


>gi|159108104|ref|XP_001704325.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
 gi|15213754|gb|AAK92152.1| DEAD-box RNA helicase [Giardia intestinalis]
 gi|157432385|gb|EDO76651.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
          Length = 554

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+H+ +   +R EI+   R     +LV  ++L  GLD P  GLV   D   +      T 
Sbjct: 375 YLHAGLTKNQRHEIVTKFRTADLWILVCTDVLARGLDFPRIGLVINFDIPSD-----LTH 429

Query: 671 LIQTIGRAARNVNSKVI 687
            I  IGRA R      +
Sbjct: 430 YIHRIGRAGRQTEGTAV 446


>gi|326429449|gb|EGD75019.1| hypothetical protein PTSG_07244 [Salpingoeca sp. ATCC 50818]
          Length = 2864

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+I ++ + R G  + LV   +  EGLDI    L+   D+       S T LIQ +GR  
Sbjct: 457 EQIAVVSNFRAGVHNTLVATCVGEEGLDIGHVDLIICFDSKG-----SSTRLIQRMGRTG 511

Query: 680 RNVNSKVI 687
           R  N +++
Sbjct: 512 RKRNGRIV 519


>gi|325860554|ref|ZP_08173658.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
 gi|325481939|gb|EGC84968.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
          Length = 572

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 10/111 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K+  + +   L  ++I    MHS++   +R +++   + G+ DVLV  +++ 
Sbjct: 247 RVIIFSGSKQKVKQIAASLGRKHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVA 306

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691
            G+DI +  +V   D   D E +       +  IGR AR + + K I + +
Sbjct: 307 RGIDIDDIAMVINYDVPHDAEDY-------VHRIGRTARADRDGKAITFVN 350


>gi|312069559|ref|XP_003137738.1| hypothetical protein LOAG_02152 [Loa loa]
 gi|307767094|gb|EFO26328.1| hypothetical protein LOAG_02152 [Loa loa]
          Length = 415

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y  +N+      + ++   T+R  + L   + +    V  MH E++  ER  I+R+ R
Sbjct: 274 DLYSTVNVT-----QAVIFCNTRRKVDYLATQMSKEKYTVSCMHGEMEQSERDVIMREFR 328

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  +LL  G+D+ +  LV   D        ++ + I  IGR+ R
Sbjct: 329 SGSSRVLITTDLLARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGR 374


>gi|294665477|ref|ZP_06730761.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292604731|gb|EFF48098.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 648

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 267 MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 326

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA RN ++  IL+     K +  +I+
Sbjct: 327 GLDVERISHVLNYDIPYDTESYVHR----IGRTGRAGRNGDA--ILFVTPREKGMLRSIE 380

Query: 703 ETTRRREKQLEHNKKHNIN 721
             TR+  ++++      +N
Sbjct: 381 RATRQPIEEMQLPSVDAVN 399


>gi|255023649|ref|ZP_05295635.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-208]
          Length = 399

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV  ++   GLDI  
Sbjct: 251 TKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI-- 308

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRRE 709
            G+  + + D     +   S +  IGR  R       I +           ++ETT++R 
Sbjct: 309 SGVTHVYNYD---IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRM 365

Query: 710 KQLE 713
           + L+
Sbjct: 366 QPLQ 369


>gi|241896736|emb|CAZ65730.1| dicer-2 protein [Mucor circinelloides f. lusitanicus]
          Length = 1608

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +II+  R G+ ++L+  N+  EGLDI  C +V   D     F  +  S IQ+ GRA +  
Sbjct: 487 KIIQKFRSGELNLLIATNVAEEGLDIQPCNVVFRFD-----FFHTLISYIQSRGRARKEG 541

Query: 683 NSKVIL 688
           +  +IL
Sbjct: 542 SKFIIL 547


>gi|238878820|gb|EEQ42458.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 655

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           ++ I  +Y+  E   +ER  I+ D + GKF VL  + +  EG DIP    + +       
Sbjct: 293 QQGIDAQYVLGETSKIEREFIVEDFKQGKFPVLCNVGVFTEGTDIPNIDSIILARPT--- 349

Query: 664 FLRSKTSLIQTIGRAAR 680
              S++ +IQ IGR  R
Sbjct: 350 --MSQSLMIQMIGRGLR 364


>gi|223056226|gb|ACM80365.1| vasa [Asterias forbesi]
          Length = 715

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 33/66 (50%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TKR A+     L +       +H + +  ER E + D R G+  VLV  ++  
Sbjct: 515 RTLVFVETKRSADFXASVLSQSEFPTTSIHGDREQREREEALADFRSGRAPVLVATSVAA 574

Query: 644 EGLDIP 649
            GLDIP
Sbjct: 575 RGLDIP 580


>gi|167748398|ref|ZP_02420525.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
 gi|167652390|gb|EDR96519.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
          Length = 466

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKRM +++T  L  R      +H ++K  +R  +++  R G+ D+LV  ++   G+D+ +
Sbjct: 261 TKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILVATDVAARGIDVDD 320

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
              V   D   D E ++      I   GRA R  N+   +    I K
Sbjct: 321 VDAVFNYDLPQDDEFYVHR----IGRTGRAGRTGNAFTFVAGKEIYK 363


>gi|161614554|ref|YP_001588519.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363918|gb|ABX67686.1| hypothetical protein SPAB_02303 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 124/303 (40%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E   +
Sbjct: 130 --------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQ-PY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + +    
Sbjct: 181 RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWR-DTF 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E++++     A+ + Q+++         G+  +   Y + L      EP P LF Y P +
Sbjct: 236 EVKRD-----AEHIYQQVS--------KGTLPTGIEYWQPLFF---SEPLPPLFSYFPAN 279

Query: 469 SLL 471
           +L+
Sbjct: 280 TLV 282



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|86357712|ref|YP_469604.1| ATP-dependent DNA helicase protein [Rhizobium etli CFN 42]
 gi|86281814|gb|ABC90877.1| ATP-dependent DNA helicase protein [Rhizobium etli CFN 42]
          Length = 701

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 6/66 (9%)

Query: 156 AIAQLLKGIHSREK-VQLLLGVTGSGKTF----TMAKVIEAMQRPAIVMAPNKILAAQLY 210
           AIA++LK +   E+ ++LL G  GSGKT      MA VIE+  + A++MAP +ILA Q +
Sbjct: 281 AIAEILKDMAGAERMLRLLQGDVGSGKTLVALMAMAAVIESGGQ-AVLMAPTEILARQHH 339

Query: 211 SEFKNF 216
           +    F
Sbjct: 340 ATISKF 345


>gi|317472067|ref|ZP_07931399.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
 gi|316900471|gb|EFV22453.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 528

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKRM +++T  L  R      +H ++K  +R  +++  R G+ D+LV  ++   G+D+ +
Sbjct: 252 TKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILVATDVAARGIDVDD 311

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
              V   D   D E ++      I   GRA R  N+   +    I K
Sbjct: 312 VDAVFNYDLPQDDEFYVHR----IGRTGRAGRTGNAFTFVAGKEIYK 354


>gi|308493749|ref|XP_003109064.1| hypothetical protein CRE_11850 [Caenorhabditis remanei]
 gi|308247621|gb|EFO91573.1| hypothetical protein CRE_11850 [Caenorhabditis remanei]
          Length = 519

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 15/170 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGII--VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R T   + A  GS +L  C+ +    E I         P E R  R  V ++ + +N A 
Sbjct: 302 RYTKQAIMAVNGSLDLTSCKSVTQHFEFI---------PHENRFER--VCEIVNFLNNAH 350

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               ++++ V +K MA+ L+     + I  + +H      +R   ++ LR G+  +LV  
Sbjct: 351 GNSYKMIIFVKSKVMADHLSSEFCMKGINSQGLHGGRSQSDRELSLKMLRTGEVQILVAT 410

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           +L   G+D+P+  +  +L+ D    +      +   GRA R   S   ++
Sbjct: 411 DLASRGIDVPD--ITHVLNYDFPMDIEEYVHRVGRTGRAGRKGESMSFMW 458


>gi|302537363|ref|ZP_07289705.1| ATP-dependent DNA helicase [Streptomyces sp. C]
 gi|302446258|gb|EFL18074.1| ATP-dependent DNA helicase [Streptomyces sp. C]
          Length = 723

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 6/113 (5%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +LA   G  I+ T LT   AE++T YL  R   V       +  +R +   DL+  +   
Sbjct: 248 HLAELPGSGIIYT-LTVAAAEEVTAYLRHRGHTVSSYTGRTENADREQAESDLQANRVKA 306

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           LV  + L  G D P+ G V  L     G   S  +  Q +GRA R V    +L
Sbjct: 307 LVATSALGMGFDKPDLGFVVHL-----GSPSSPIAYYQQVGRAGRGVEHAEVL 354


>gi|300122867|emb|CBK23874.2| unnamed protein product [Blastocystis hominis]
          Length = 394

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  E L   L E N  V  MH ++   ER  I+ + R G   VL+  ++   GLD+ +
Sbjct: 244 TRRKVEWLAAKLREANFTVSSMHGDMPQKERDRIMEEFRAGNSRVLIATDVWGRGLDVQQ 303

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        S+   I  IGR+ R
Sbjct: 304 VSLVINYDLPN-----SRELYIHRIGRSGR 328


>gi|293603936|ref|ZP_06686351.1| transcription-repair coupling factor [Achromobacter piechaudii ATCC
           43553]
 gi|292817773|gb|EFF76839.1| transcription-repair coupling factor [Achromobacter piechaudii ATCC
           43553]
          Length = 1160

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 38/190 (20%), Positives = 73/190 (38%), Gaps = 21/190 (11%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQ 233
           GSG  + +A +      P +++    + A +L  E + F P   V     +    YD + 
Sbjct: 43  GSGDAWLLADLARQASAPLVILTAEPVEAQRLAEEIQLFAPDLRVRQLPDWETLPYDAFS 102

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
           P             +  I+E++    H+    +++  D + V   + +Y +      +  
Sbjct: 103 PH------------QDLISERL----HTLHSLMMKTVDVLTVPITTALYRLAPPSFLAAY 146

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
               K  D + +  L + L    Y         G F + G  I++FP     V +R+ +F
Sbjct: 147 TFSFKQKDKLNEAALRAQLTLANYNHVTQVTAPGEFCLRGGLIDLFPMG-SVVPYRLDLF 205

Query: 354 GNDIEEISEF 363
            ++IE I  F
Sbjct: 206 DDEIETIRSF 215


>gi|283783133|ref|YP_003373887.1| transcription-repair coupling factor [Gardnerella vaginalis 409-05]
 gi|283441749|gb|ADB14215.1| transcription-repair coupling factor [Gardnerella vaginalis 409-05]
          Length = 1202

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 18/181 (9%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF-VSYYDYYQPEAYVPRTDTYIEKES 249
           A ++P +V+ P+   A    +  ++++  +A +   +  ++    E   PR DT   + +
Sbjct: 89  AKKKPVVVIVPSSRDAEDFIASVRDWYDGDAQDVAKLEAWETLPHERLSPRADTVASRIA 148

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSV-----SCIYGIGSVESYSQMIVQLKIGDSVE 304
                  R+ H    + L     ++V  V       + GIG ++      +  + G  + 
Sbjct: 149 VFR----RLCHPENNTSLFGPIRVLVMPVRSLIQPVVEGIGDIDP-----LLFECGKELT 199

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEF 363
            +  +  LV+  Y R D+ + RG F V G  I++F P+    V  R+  FG++I+ I +F
Sbjct: 200 LEYAVKRLVENAYNRVDLVMERGEFAVRGGIIDVFAPTMTHPV--RIEFFGDEIDTIKQF 257

Query: 364 Y 364
           +
Sbjct: 258 H 258


>gi|225869886|ref|YP_002745833.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047]
 gi|225699290|emb|CAW92639.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047]
          Length = 671

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L +Y ++ +  V  MH ++K  ++  I++  +  + DVLV   ++  G+++P   ++ I
Sbjct: 487 ELKDY-FKASASVALMHGKMKADDKEMIMQRFKAKEIDVLVSTTVIEVGVNVPNATIMLI 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           ++AD+ G     + L Q  GR  R    S  IL AD  T S
Sbjct: 546 MNADRFGL----SQLHQLRGRVGRGSKQSYAILVADPKTDS 582


>gi|157375001|ref|YP_001473601.1| type III restriction enzyme, res subunit [Shewanella sediminis
           HAW-EB3]
 gi|157317375|gb|ABV36473.1| type III restriction enzyme, res subunit [Shewanella sediminis
           HAW-EB3]
          Length = 580

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 9/108 (8%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A++QG  +++   T R A+++ + L      +  + ++ KT++R EII D +  K   LV
Sbjct: 248 ASRQG--VIIFAATVRHAQEIMQRLMHETAAL--ITADTKTVDRDEIICDFKARKIKYLV 303

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            + +L  G D P   L+AIL         S +   Q +GR  R    K
Sbjct: 304 NVAVLTTGFDAPHVDLIAILRPTA-----SVSLFQQMVGRGLRICEGK 346


>gi|85792253|gb|ABC84194.1| eukaryotic translation initiation factor 4A isoform 2 [Sus scrofa]
          Length = 407

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 282 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 341

Query: 651 CGLV 654
             LV
Sbjct: 342 VPLV 345


>gi|71800669|gb|AAZ41384.1| Ded1-like DEAD-box RNA helicase [Chironomus tentans]
          Length = 776

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 9/100 (9%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+LY+    V  +H +    ER + ++  R G   +LV   +   G
Sbjct: 536 LIFVETKKGADALEEFLYQNKHPVTSIHGDRSQREREDALKCFRSGDCPILVATAVAARG 595

Query: 646 LDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVN 683
           LDIP    V   D  +D E +       +  IGR  R  N
Sbjct: 596 LDIPHVKHVINYDLPSDVEEY-------VHRIGRTGRMGN 628


>gi|19387223|gb|AAL87142.1|AF479823_1 DEAD box RNA helicase Vasa [Pantodon buchholzi]
          Length = 394

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 214 RTMVFVETKRKADFIATFLCQEQISTTSIHGDREQREREQALGDFRSGKCPVLVATSVAA 273

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ K I + D
Sbjct: 274 RGLDIEHVQHVVNFDLPS-----TIDEYVHRIGRTGRCGNTGKAISFFD 317


>gi|38198643|ref|NP_938180.1| eukaryotic translation initiation factor 4A, isoform 1A [Danio
           rerio]
 gi|29294689|gb|AAH48899.1| Eukaryotic translation initiation factor 4A, isoform 1A [Danio
           rerio]
          Length = 406

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H +++  ER  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSALHGDMEQKERDVIMKEFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|16764571|ref|NP_460186.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62179736|ref|YP_216153.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167991999|ref|ZP_02573098.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168264274|ref|ZP_02686247.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194446626|ref|YP_002040470.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449956|ref|YP_002045215.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197250617|ref|YP_002146826.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|224584278|ref|YP_002638076.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238910964|ref|ZP_04654801.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16419734|gb|AAL20145.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62127369|gb|AAX65072.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194405289|gb|ACF65511.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408260|gb|ACF68479.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197214320|gb|ACH51717.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|205329787|gb|EDZ16551.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205347253|gb|EDZ33884.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|224468805|gb|ACN46635.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261246428|emb|CBG24237.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992993|gb|ACY87878.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157757|emb|CBW17249.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312912204|dbj|BAJ36178.1| transcriptional repressor UlaR [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|322714206|gb|EFZ05777.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323129485|gb|ADX16915.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988107|gb|AEF07090.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 124/303 (40%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E   +
Sbjct: 130 --------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQ-PY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + +    
Sbjct: 181 RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWR-DTF 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E++++     A+ + Q+++         G+  +   Y + L      EP P LF Y P +
Sbjct: 236 EVKRD-----AEHIYQQVS--------KGTLPAGIEYWQPLFF---SEPLPPLFSYFPAN 279

Query: 469 SLL 471
           +L+
Sbjct: 280 TLV 282



 Score = 37.4 bits (85), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|50554139|ref|XP_504478.1| YALI0E27715p [Yarrowia lipolytica]
 gi|74659776|sp|Q6C4D4|DBP2_YARLI RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49650347|emb|CAG80081.1| YALI0E27715p [Yarrowia lipolytica]
          Length = 552

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+   TKR+A+D+T++L +       +H + +  ER  ++ + R GK  ++V  ++  
Sbjct: 365 KCLIFTGTKRVADDITKFLRQDGWPALAIHGDKQQQERDWVLNEFRQGKSPIMVATDVAS 424

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+     V   D     +  +    +  IGR  R
Sbjct: 425 RGIDVKGINFVINYD-----YPSNSEDYVHRIGRTGR 456


>gi|116619820|ref|YP_821976.1| replication restart DNA helicase PriA [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116222982|gb|ABJ81691.1| replication restart DNA helicase PriA [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 806

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           I+ D R G +D+LVG  ++ +G DIP   LV ++ AD            R+   L Q  G
Sbjct: 601 ILNDFREGNYDMLVGTQMIAKGHDIPNVTLVGVISADIGLGMPDFRAAERTFQLLTQVAG 660

Query: 677 RAARNVNSKVIL 688
           RA R     ++L
Sbjct: 661 RAGRGNVPGIVL 672


>gi|327313656|ref|YP_004329093.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
 gi|326944744|gb|AEA20629.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
          Length = 572

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 10/111 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K+  + +   L  ++I    MHS++   +R +++   + G+ DVLV  +++ 
Sbjct: 247 RVIIFSGSKQKVKQIAASLGRKHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVA 306

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691
            G+DI +  +V   D   D E +       +  IGR AR + + K I + +
Sbjct: 307 RGIDIDDIAMVINYDVPHDAEDY-------VHRIGRTARADRDGKAITFVN 350


>gi|322616592|gb|EFY13501.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619893|gb|EFY16767.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622461|gb|EFY19306.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629421|gb|EFY26198.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633907|gb|EFY30645.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636838|gb|EFY33541.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641362|gb|EFY38001.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645127|gb|EFY41656.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652291|gb|EFY48647.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655642|gb|EFY51944.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660947|gb|EFY57177.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665467|gb|EFY61655.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667556|gb|EFY63717.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673650|gb|EFY69752.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677576|gb|EFY73640.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679759|gb|EFY75798.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687232|gb|EFY83204.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194018|gb|EFZ79219.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199427|gb|EFZ84520.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323208844|gb|EFZ93782.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210654|gb|EFZ95533.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217818|gb|EGA02533.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323228043|gb|EGA12184.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229621|gb|EGA13744.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232846|gb|EGA16942.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240118|gb|EGA24162.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242895|gb|EGA26916.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323255555|gb|EGA39314.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261591|gb|EGA45168.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266985|gb|EGA50470.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272089|gb|EGA55503.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 124/303 (40%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E   +
Sbjct: 130 --------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQ-PY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + +    
Sbjct: 181 RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWR-DTF 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E++++     A+ + Q+++         G+  +   Y + L      EP P LF Y P +
Sbjct: 236 EVKRD-----AEHIYQQVS--------KGTLPAGIEYWQPLFF---SEPLPPLFSYFPAN 279

Query: 469 SLL 471
           +L+
Sbjct: 280 TLV 282



 Score = 37.4 bits (85), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|313123981|ref|YP_004034240.1| phage helicase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280544|gb|ADQ61263.1| phage helicase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 437

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 36/76 (47%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G + +    T   A ++ +   E  I       +  T  R E++   + GK+ VLV  +L
Sbjct: 189 GRQTICYTPTVATAREVVQRFQEAGISAAEADGKTPTAIRDEVMEGFKSGKYQVLVNCDL 248

Query: 642 LREGLDIPECGLVAIL 657
           + EG ++PEC  V +L
Sbjct: 249 VSEGFNVPECSCVILL 264


>gi|311743209|ref|ZP_07717016.1| DeaD protein [Aeromicrobium marinum DSM 15272]
 gi|311313277|gb|EFQ83187.1| DeaD protein [Aeromicrobium marinum DSM 15272]
          Length = 567

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 4/147 (2%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  + G  +++ V TK+  E+L E L  R      ++ ++   +R  I+  L+ G  D+L
Sbjct: 240 LEVENGDGMIIFVRTKQATEELAEKLRSRGFDAAALNGDLVQAQRERIVGQLKGGSLDIL 299

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLD+    +  +++ D      S    I   GRA R  + + +L+     + 
Sbjct: 300 VATDVAARGLDVDR--ITHVINHDIPHDAESYVHRIGRTGRAGR--SGEAVLFVTPRERR 355

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQ 723
           +  AI++ + R  +++       +N Q
Sbjct: 356 MLSAIEKVSGRPVEEMSVPSAEEVNTQ 382


>gi|257870943|ref|ZP_05650596.1| helicase [Enterococcus gallinarum EG2]
 gi|257805107|gb|EEV33929.1| helicase [Enterococcus gallinarum EG2]
          Length = 502

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  +   +H ++   +R+ ++R  + G  D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|160933491|ref|ZP_02080879.1| hypothetical protein CLOLEP_02337 [Clostridium leptum DSM 753]
 gi|156867368|gb|EDO60740.1| hypothetical protein CLOLEP_02337 [Clostridium leptum DSM 753]
          Length = 824

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIGRAARN 681
           G++D++VG  ++ +GLD P   LV +L AD+         + R+   L Q +GR+ R 
Sbjct: 619 GEYDIMVGTQMVAKGLDFPNVTLVGVLSADQALYSDDFRSYERAFALLTQVVGRSGRG 676


>gi|109077270|ref|XP_001100045.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 3
           [Macaca mulatta]
 gi|297294298|ref|XP_001099856.2| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 1
           [Macaca mulatta]
          Length = 725

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 543 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 602

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 603 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 646


>gi|37728039|gb|AAO43500.1| recombination and repair protein [Rhizobium etli]
          Length = 701

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 6/66 (9%)

Query: 156 AIAQLLKGIHSREK-VQLLLGVTGSGKTF----TMAKVIEAMQRPAIVMAPNKILAAQLY 210
           AIA++LK +   E+ ++LL G  GSGKT      MA VIE+  + A++MAP +ILA Q +
Sbjct: 281 AIAEILKDMAGAERMLRLLQGDVGSGKTLVALMAMAAVIESGGQ-AVLMAPTEILARQHH 339

Query: 211 SEFKNF 216
           +    F
Sbjct: 340 ATISKF 345


>gi|47206108|emb|CAF92273.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 215

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 85/176 (48%), Gaps = 19/176 (10%)

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTG--L 554
           YGF  PS +  R +      C++   ++  A  G+ +       I+++I   ++ T   +
Sbjct: 48  YGFEKPSAIQQRAIL----PCIKGHDVIAQAQSGTGKTATFVISILQRIDTSLKETQALI 103

Query: 555 VDPPVEIRSARTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           + P  E+     ++    D+Y+ + +      + ++ V T+R  + LTE L  ++  V  
Sbjct: 104 LAPTRELAQQEWKLPTLCDLYETLTIT-----QAVIFVNTRRKVDWLTENLLGKDFTVSA 158

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
           MH +++   R  ++++ R G   +L+  +LL  G+D+ +  LV   D  A++E ++
Sbjct: 159 MHGDMEQKTRDLVMKEFRSGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYI 214


>gi|325291138|ref|YP_004267319.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324966539|gb|ADY57318.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 518

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L +R      +H ++  L R  ++R  + G  D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELYEALNKRGYSAEGIHGDLTQLRRDSVLRHFKEGVTDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  I + D     +   S +  IGR  R
Sbjct: 307 SGVTHIYNFD---IPQDPESYVHRIGRTGR 333


>gi|297846616|ref|XP_002891189.1| hypothetical protein ARALYDRAFT_473682 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337031|gb|EFH67448.1| hypothetical protein ARALYDRAFT_473682 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1321

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++   R G F+V+V  ++  EGLDI E  LV   DA+      S   +IQ +GR  R  N
Sbjct: 529 VLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANV-----SPLRMIQRMGRTGRKNN 583

Query: 684 SKV 686
            ++
Sbjct: 584 GRI 586


>gi|325678863|ref|ZP_08158461.1| ATP-dependent DNA helicase RecG [Ruminococcus albus 8]
 gi|324109367|gb|EGC03585.1| ATP-dependent DNA helicase RecG [Ruminococcus albus 8]
          Length = 678

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            K  A++L+E  + ++ RV  +H  +   ++ ++++  +  + D+LV   ++  G+D+P 
Sbjct: 484 VKSYAKNLSEGFF-KDYRVGLLHGRLAPDKKEKVMKQFKEHELDLLVSTTVVEVGVDVPN 542

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITKSI 697
             ++ I +AD+ G     + L Q  GR  R    S  IL  D  T+ +
Sbjct: 543 AAIMVIENADRFGL----SQLHQLRGRVGRGQFKSSCILITDNPTEEV 586


>gi|172040364|ref|YP_001800078.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
 gi|171851668|emb|CAQ04644.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
          Length = 778

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 6/130 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R      ++ ++   +R   +  L+ G+ D+LV  ++   
Sbjct: 373 MIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAAR 432

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE 703
           GLD+     V   D       R   S +  IGR  R   S + +L+     + +  +I+ 
Sbjct: 433 GLDVERITHVFNYD-----IPRDTESYVHRIGRTGRAGRSGRAVLFVTPRERRMLKSIER 487

Query: 704 TTRRREKQLE 713
            T+ R  ++E
Sbjct: 488 ATKSRLNEIE 497


>gi|120405422|ref|YP_955251.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119958240|gb|ABM15245.1| ATP-dependent RNA helicase CsdA [Mycobacterium vanbaalenii PYR-1]
          Length = 564

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 8/151 (5%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  +QG  +++ V TK+  E++ E L  R      ++ ++    R   I  L+ G  D+L
Sbjct: 246 LEVEQGDAMIVFVRTKQATEEVAEKLRSRGFAAAAINGDIPQAVRERTISQLKDGTIDIL 305

Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           V  ++   GLD+     V   D   D E ++      I   GRA R  +   +L+     
Sbjct: 306 VATDVAARGLDVERISHVVNFDIPHDPESYVHR----IGRTGRAGR--SGTALLFVTPRE 359

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           + +  AI+  TR++  + E     ++N + V
Sbjct: 360 RHLLGAIERVTRQKLVESELPSVEDVNEKRV 390


>gi|306827200|ref|ZP_07460490.1| phage DNA/RNA helicase [Streptococcus pyogenes ATCC 10782]
 gi|304430656|gb|EFM33675.1| phage DNA/RNA helicase [Streptococcus pyogenes ATCC 10782]
          Length = 454

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 33/49 (67%), Gaps = 2/49 (4%)

Query: 605 RNIRVRYMHSEVKT--LERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +++ +  +H++ KT   +R +I++D R GK  V+  ++L+ EG D+P+C
Sbjct: 209 QSMGINAIHADAKTPKAKRDKIMKDFRDGKIQVICNVDLISEGFDVPDC 257


>gi|260584701|ref|ZP_05852447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
           elegans ATCC 700633]
 gi|260157724|gb|EEW92794.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
           elegans ATCC 700633]
          Length = 509

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  R   +H ++   +R+ ++RD +    D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELARGLEMRGFRAEGIHGDLSQQKRMSVLRDFKNNHLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|237742837|ref|ZP_04573318.1| DNA/RNA helicase [Fusobacterium sp. 4_1_13]
 gi|229430485|gb|EEO40697.1| DNA/RNA helicase [Fusobacterium sp. 4_1_13]
          Length = 942

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 13/123 (10%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED--LTEYLYERNIRVRYMHSEVKTLE 620
           ++ T+V+ + ++    +  G R+   +   ++ E   L E   E+ I+   + SE    E
Sbjct: 414 TSDTRVKHILEKSKYYSYSGERLSCLIFVSKVEEAKILVEKFLEQGIKAIALSSENSDNE 473

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS---LIQTIGR 677
           R E IR L  G+ + ++ +++  EG+DIP C    IL       LR  TS    IQ +GR
Sbjct: 474 REEAIRKLEQGEIEYIISVDIFNEGVDIP-CVNQVIL-------LRPTTSAIVYIQQLGR 525

Query: 678 AAR 680
             R
Sbjct: 526 GLR 528


>gi|194899456|ref|XP_001979275.1| GG24642 [Drosophila erecta]
 gi|190650978|gb|EDV48233.1| GG24642 [Drosophila erecta]
          Length = 1450

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ++++I+ D R G  +VLV  ++  EG+D+ E  ++   D        + T  +Q IGR  
Sbjct: 485 QQLQIMADFRSGTSNVLVATSIGEEGIDVGEVEMIVCFDICSS----NPTRFVQRIGRTG 540

Query: 680 RNVNSKVIL 688
           R  N +V++
Sbjct: 541 RKKNGEVVM 549


>gi|194745250|ref|XP_001955101.1| GF18603 [Drosophila ananassae]
 gi|190628138|gb|EDV43662.1| GF18603 [Drosophila ananassae]
          Length = 1475

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ++++I+ D R G  +VLV  ++  EG+D+ E  ++   D        + T  +Q IGR  
Sbjct: 484 QQLQIMADFRSGTSNVLVATSIGEEGIDVGEVEMIVCFDICSS----NPTRFVQRIGRTG 539

Query: 680 RNVNSKVIL 688
           R  N +V++
Sbjct: 540 RKKNGEVVM 548


>gi|160893327|ref|ZP_02074114.1| hypothetical protein CLOL250_00876 [Clostridium sp. L2-50]
 gi|156865019|gb|EDO58450.1| hypothetical protein CLOL250_00876 [Clostridium sp. L2-50]
          Length = 750

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFF 217
             R+K  LL G+TGSGKT    K+++    M + AI++ P   L  Q    F+N+F
Sbjct: 229 QGRQKTYLLHGITGSGKTEVYVKIVKKTIEMGKQAIILIPEIALTYQTVRYFRNYF 284


>gi|45360981|ref|NP_989127.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [Xenopus (Silurana)
           tropicalis]
 gi|38511935|gb|AAH61342.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19 [Xenopus (Silurana)
           tropicalis]
 gi|89272120|emb|CAJ82182.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19 [Xenopus (Silurana)
           tropicalis]
          Length = 487

 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 8/113 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++Y  I +A     + ++   T++ A  L   LY+   +V  +  E+   +R  +I   R
Sbjct: 334 NIYGSITIA-----QAMIFCHTRKTASWLAGELYKEGHQVALLSGEMMVEQRAAVIDRFR 388

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            GK  VLV  N+   G+D+ +  +V   D   DK+G   ++T L   IGR  R
Sbjct: 389 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYL-HRIGRTGR 440


>gi|315222004|ref|ZP_07863915.1| primosomal protein [Streptococcus anginosus F0211]
 gi|315188970|gb|EFU22674.1| primosomal protein [Streptococcus anginosus F0211]
          Length = 799

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+++   G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 592 QILKEFGEGRADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVA 651

Query: 676 GRAAR 680
           GRA R
Sbjct: 652 GRAGR 656


>gi|295828366|gb|ADG37852.1| AT1G12770-like protein [Capsella grandiflora]
 gi|295828368|gb|ADG37853.1| AT1G12770-like protein [Capsella grandiflora]
 gi|295828370|gb|ADG37854.1| AT1G12770-like protein [Capsella grandiflora]
 gi|295828372|gb|ADG37855.1| AT1G12770-like protein [Capsella grandiflora]
          Length = 190

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  +D+   L  R +    MH ++  LER  +++  + G+  VLV   L   GLD+ EC 
Sbjct: 87  RQLKDVVYKLEARGMNSAEMHGDLGKLERSTVLKKFKKGEIKVLVTNELSARGLDVAECD 146

Query: 653 LVAILD 658
           LV  L+
Sbjct: 147 LVVNLE 152


>gi|308081024|ref|NP_001183303.1| hypothetical protein LOC100501699 [Zea mays]
 gi|238010618|gb|ACR36344.1| unknown [Zea mays]
          Length = 643

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 34/73 (46%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L ++L+        +H +    ER   +R  + G   +LV  ++   G
Sbjct: 439 LVFVETKRGADALEDWLFRNGFPATSIHGDRTQQEREHALRSFKSGATPILVATDVAARG 498

Query: 646 LDIPECGLVAILD 658
           LDIP    V   D
Sbjct: 499 LDIPHVAHVINFD 511


>gi|118594179|ref|ZP_01551526.1| putative ATP-dependent RNA helicase protein [Methylophilales
           bacterium HTCC2181]
 gi|118439957|gb|EAV46584.1| putative ATP-dependent RNA helicase protein [Methylophilales
           bacterium HTCC2181]
          Length = 427

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   TKRMA+ L++ LY  +I+   +H ++    R + I   +  +  +LV  +L   G
Sbjct: 247 IIFTATKRMADQLSDQLYHSDIKTSALHGDMSQGSRTKTINRFKRNETKILVATDLASRG 306

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +D+     V   D       R     I  IGR  R  N  + +
Sbjct: 307 IDVKNISHVFNYDMP-----RFAEDYIHRIGRTGRANNKGIAI 344


>gi|74003476|ref|XP_860721.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 13 [Canis familiaris]
 gi|74003478|ref|XP_860753.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 14 [Canis familiaris]
          Length = 280

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 155 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 214

Query: 651 CGLV 654
             LV
Sbjct: 215 VSLV 218


>gi|88813291|ref|ZP_01128530.1| Transcription-repair coupling factor [Nitrococcus mobilis Nb-231]
 gi|88789463|gb|EAR20591.1| Transcription-repair coupling factor [Nitrococcus mobilis Nb-231]
          Length = 1146

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 9/118 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R+A  L E +   + RVR  H +++  E   ++ D    +F+VLV   ++  G+D+P  
Sbjct: 821 ERIARQLHELI--PDARVRIAHGQMRETELERVMLDFYHQRFNVLVCTTIIESGIDVPSA 878

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             + I  AD+ G  R    L Q  GR  R+ +     YA  I     L   +  +R E
Sbjct: 879 NTIIINRADRLGLAR----LYQLRGRVGRSHHRA---YAYLIAPPKNLMTPDAVKRLE 929


>gi|88800098|ref|ZP_01115668.1| transcription-repair coupling protein Mfd [Reinekea sp. MED297]
 gi|88777224|gb|EAR08429.1| transcription-repair coupling protein Mfd [Reinekea sp. MED297]
          Length = 1151

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 96/213 (45%), Gaps = 17/213 (7%)

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRP--AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           ++ + G++GS     +A+++   Q+    IV +PN++   +L ++   +      ++ V 
Sbjct: 15  IRTISGLSGSADALALAEIMTQHQQTVLCIVDSPNQL--ERLSTDLDAY--RGQADWQVM 70

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGS 286
            +  ++   Y    D +   E  I+E     R +  ++L +R   IV+++ + + + +  
Sbjct: 71  AFPDWETLPY----DNFSPHEDIISE-----RLAVLKALEQRPYAIVLTTAANLSHRLPP 121

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           V        Q ++GD +   +    L K  Y+  D     G F V G  ++++P   E +
Sbjct: 122 VSEIQGGAFQWQVGDPLNLDQQREKLNKAGYRATDTVFEHGEFAVRGALLDVYPMGSE-L 180

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             R+ +F ++IE I  F P T +       I++
Sbjct: 181 PVRIELFDDEIESIRWFDPETQRTSEKTHAIEL 213


>gi|313608166|gb|EFR84210.1| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL F2-208]
          Length = 277

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 102 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 157

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  + S  IL AD  T+
Sbjct: 158 HQLRGRVGRGADQSYCILIADPKTE 182


>gi|330913942|ref|XP_003296428.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1]
 gi|311331414|gb|EFQ95479.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1]
          Length = 1572

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 15/84 (17%)

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           E+NI +R          +I  +   R G+ + L   ++  EGLDIP+C LV   D     
Sbjct: 508 EQNISLR---------NQILTVAKFRRGELNCLFATSVAEEGLDIPQCNLVVRFD----- 553

Query: 664 FLRSKTSLIQTIGRAARNVNSKVI 687
             R+  + +Q+ GR AR+ NSK +
Sbjct: 554 LYRTMIAYVQSRGR-ARHRNSKYL 576


>gi|311271296|ref|XP_001928807.2| PREDICTED: LOW QUALITY PROTEIN: nucleolar RNA helicase 2 [Sus
           scrofa]
          Length = 844

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK+ A++L++    R    + +H ++   +R   ++  R G F VLV  N+  
Sbjct: 501 RTIIFCETKKEAQELSQNAAVRQ-DAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAA 559

Query: 644 EGLDIPECGLV 654
            GLDIPE  LV
Sbjct: 560 RGLDIPEVDLV 570


>gi|297243627|ref|ZP_06927558.1| transcription-repair coupling factor [Gardnerella vaginalis AMD]
 gi|296888378|gb|EFH27119.1| transcription-repair coupling factor [Gardnerella vaginalis AMD]
          Length = 1202

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 18/181 (9%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF-VSYYDYYQPEAYVPRTDTYIEKES 249
           A ++P +V+ P+   A    +  ++++  +A +   +  ++    E   PR DT   + +
Sbjct: 89  AKKKPVVVIVPSSRDAEDFIASVRDWYDGDAQDVAKLEAWETLPHERLSPRADTVASRIA 148

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSV-----SCIYGIGSVESYSQMIVQLKIGDSVE 304
                  R+ H    + L     ++V  V       + GIG ++      +  + G  + 
Sbjct: 149 VFR----RLCHPENNTSLFGPIRVLVMPVRSLIQPVVEGIGDIDP-----LLFECGKELT 199

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEF 363
            +  +  LV+  Y R D+ + RG F V G  I++F P+    V  R+  FG++I+ I +F
Sbjct: 200 LEYAVKRLVENAYTRVDLVMERGEFAVRGGIIDVFAPTMTHPV--RIEFFGDEIDTIKQF 257

Query: 364 Y 364
           +
Sbjct: 258 H 258


>gi|289435167|ref|YP_003465039.1| primosomal protein N [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171411|emb|CBH27955.1| primosomal protein N [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 797

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     +++R  R  + D+L+G  ++ +GLD P
Sbjct: 558 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLRSFRNHEADILLGTQMIAKGLDFP 616

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 617 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 655


>gi|166714754|gb|ABY88091.1| UvrB [Stenotrophomonas sp. LMG 10883]
          Length = 40

 Score = 41.6 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 27/39 (69%)

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
           I++FP+ L+  A R+ +F  DIE +S F PLTG+ +R +
Sbjct: 2   IDVFPAELDSEALRIELFDGDIENMSMFDPLTGESLRKM 40


>gi|254560072|ref|YP_003067167.1| helicase domain-containing protein [Methylobacterium extorquens
           DM4]
 gi|254267350|emb|CAX23182.1| putative enzyme with a helicase domain [Methylobacterium extorquens
           DM4]
          Length = 994

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E R+     E  + E   A  Q   ++ T    R  E L  Y     ++++ + S+    
Sbjct: 259 EDRAIAVAAERQFLEDKAAGLQHRLMVRTDSKARATELLDAYEAVTKLKLKLVKSDHSVG 318

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
               I+ DLR G+ D +V +N+L EG D+P   + AI    K     S    +Q IGR A
Sbjct: 319 HVKRILADLRSGQLDGIVCVNMLGEGFDLPNLKIAAIHTPHK-----SLAVTLQFIGRFA 373

Query: 680 RN 681
           R 
Sbjct: 374 RT 375


>gi|255931895|ref|XP_002557504.1| Pc12g06640 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582123|emb|CAP80291.1| Pc12g06640 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 645

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 9/112 (8%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECG 652
           A  LT    +  +  RY+ +      R+E +R  +  +F VL+   L  EG DIP  +C 
Sbjct: 299 ARRLTAAFRDHGVDARYITASTPKGVRVEQLRAFKDQEFPVLLNCGLFTEGTDIPNIDCV 358

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           L+A          RS+  LIQ IGR  R    K   +   +  S++  +  T
Sbjct: 359 LLARP-------TRSRNLLIQMIGRGLRLFPGKKDCHVIDMVASLETGVLST 403


>gi|218249019|ref|YP_002374390.1| transcription-repair coupling factor [Cyanothece sp. PCC 8801]
 gi|218169497|gb|ACK68234.1| transcription-repair coupling factor [Cyanothece sp. PCC 8801]
          Length = 1158

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L+IG +   +E+  +LV+  Y+R  +    G +   GD ++IFP   E +  R+  FG+ 
Sbjct: 143 LQIGITKTSQEIDETLVRLGYERVALVETEGQWSRRGDIVDIFPVSSE-LPIRLEWFGDA 201

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           +E+I E  P T + +  +E + +   S      P +   +K     L+  L + EKEG
Sbjct: 202 LEKIRELDPATQRSLDKLEQVILTPTSF----NPIIANTLKNKNINLQNYLSDEEKEG 255


>gi|152986523|ref|YP_001349049.1| putative helicase [Pseudomonas aeruginosa PA7]
 gi|150961681|gb|ABR83706.1| putative helicase [Pseudomonas aeruginosa PA7]
          Length = 676

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 7/123 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A ++     ER      +HS+    E+  I+  LR G  D ++ + +L EG D P+  + 
Sbjct: 353 AREIRSLYQERGFNADVIHSKQTEDEQAAILAALRNGSLDCIIQVQMLGEGFDHPKLSVA 412

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI-QLAIDETTRRRE-KQL 712
           AI         RS    IQ +GR  R V      + D I   +  L ++   R +E KQ 
Sbjct: 413 AIFRP-----FRSLAPYIQFVGRIMRVVVQNDPGHPDNIGHIVTHLGMNLDARLKEFKQF 467

Query: 713 EHN 715
           E++
Sbjct: 468 END 470


>gi|148228442|ref|NP_001082679.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Xenopus laevis]
 gi|51704021|gb|AAH80992.1| LOC398649 protein [Xenopus laevis]
          Length = 610

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  ++LT  +         +H +    ER  ++ + R GK  +L
Sbjct: 324 IMAEKENKTIIFVETKRRCDELTRRMRRDGWPAMCIHGDKSQQERDWVLCEFRTGKAPIL 383

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N K   Y      +
Sbjct: 384 IATDVASRGLDVEDIKFVINYD-----YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 437

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 438 LKQA-----RELVKVLEEAN------QTINPKLMQLVD 464


>gi|78212830|ref|YP_381609.1| transcription-repair coupling factor [Synechococcus sp. CC9605]
 gi|78197289|gb|ABB35054.1| transcription-repair coupling factor [Synechococcus sp. CC9605]
          Length = 1192

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 86/180 (47%), Gaps = 29/180 (16%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L+ GD V+ + L  +L +  Y+R +     G++   GD ++IFP   E +  R+  FG +
Sbjct: 145 LRKGDQVDLEALGETLAQLGYERVNTIEQEGSWSRRGDIVDIFPVSSE-LPVRLEFFGEE 203

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE-LEKEGR 415
           ++++ EF P + + +  V+ +++           T       I ++L+  + + LE    
Sbjct: 204 LDKLREFDPASQRSLDPVDALRL-----------TPTGFGPLIADQLRETMPDGLEP--- 249

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LL A+  EQ        L   G+ + +    R L G   G+ P +L +Y+P+ + + +DE
Sbjct: 250 LLGAEGTEQ--------LLNGGTPEGM----RRLMGLAWGQ-PASLLDYLPDTTTVVIDE 296


>gi|82523774|emb|CAI78518.1| hypothetical protein [uncultured bacterium]
          Length = 694

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 5/89 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H ++K  E  +I+   + GK DVLV   +L  G+D+    ++ I  A++ G    
Sbjct: 513 RVGLVHGQMKQQEAQKIMEQFKDGKIDVLVATTVLEVGVDVANATVMVIEHAERFGL--- 569

Query: 668 KTSLIQTIGRAARNV-NSKVILYADTITK 695
              L Q  GR  R V +S  +L AD  T+
Sbjct: 570 -AQLHQLRGRIGRGVHDSSCLLIADLETE 597


>gi|330986881|gb|EGH84984.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 691

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L+  L E  +RV  +H  +K  E+  I+ + + G   +LV   ++  G+D+P   L+ 
Sbjct: 507 EELSSALGE--VRVGLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLMI 564

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 565 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 602


>gi|330957275|gb|EGH57535.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 691

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L+  L E  +RV  +H  +K  E+  I+ + + G   +LV   ++  G+D+P   L+ 
Sbjct: 507 EELSSALGE--VRVGLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLMI 564

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 565 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 602


>gi|310824213|ref|YP_003956571.1| transcription-repair-coupling factor [Stigmatella aurantiaca
           DW4/3-1]
 gi|309397285|gb|ADO74744.1| Transcription-repair-coupling factor [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1194

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 33/240 (13%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P+GD  A + + L+  H R + Q   G+ G+ +   +A++   ++ P + +A ++  A  
Sbjct: 20  PTGDPFARLLERLQPGH-RARTQ---GLHGAARGHVLARLSRTLKAPLVCVAVDEEAADA 75

Query: 209 LYSEFKNFFPHNAVEYF----------VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           L  +   F   N               V  YD   PE ++            ++E++  +
Sbjct: 76  LAGDLAFFLGGNGTLLAPRVLRLPADEVLPYDELSPEPHI------------VSERLGTL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
            H +  +   R   +V+S  + +  +  V + + +   L  G  +++  L   LV   Y+
Sbjct: 124 FHLSQGT---RFPALVLSLRALLRRVLPVSTMTGLAQLLTTGQDIDRDTLARQLVLMGYQ 180

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
              +    GTF V G  +++F S L +   R+  FG+ IE I  F P      R V+++K
Sbjct: 181 SSPLVEDPGTFSVRGGILDVF-SPLYERPVRLEFFGDTIESIRLFEP---DNQRTVDSLK 236


>gi|237681149|ref|NP_001153721.1| ATP-dependent RNA helicase belle [Tribolium castaneum]
 gi|270008148|gb|EFA04596.1| belle [Tribolium castaneum]
          Length = 699

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 9/100 (9%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+L+     V  +H +    ER + +R  R G   +LV   +   G
Sbjct: 479 LVFVETKKGADSLEEFLHFEGYPVTSIHGDRSQREREDALRQFRSGNTPILVATAVAARG 538

Query: 646 LDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVN 683
           LDIP    V   D  +D E +       +  IGR  R  N
Sbjct: 539 LDIPHVKHVINFDLPSDIEEY-------VHRIGRTGRMGN 571


>gi|154324134|ref|XP_001561381.1| eukaryotic initiation factor 4A [Botryotinia fuckeliana B05.10]
 gi|160395528|sp|A6RJ45|IF4A_BOTFB RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|150842695|gb|EDN17888.1| eukaryotic initiation factor 4A [Botryotinia fuckeliana B05.10]
          Length = 398

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH ++   +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 273 TRRKVDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQ 332

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 333 VSLVINYDLPANRENYI 349


>gi|70949647|ref|XP_744215.1| helicase  [Plasmodium chabaudi chabaudi]
 gi|56524075|emb|CAH74440.1| helicase, truncated, putative [Plasmodium chabaudi chabaudi]
          Length = 186

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RI++ V TKR A+ +T+ L    +    +H + K  ER  ++ D + GK  +L+  ++  
Sbjct: 21  RIIVFVETKRSADFITKALRLEGMPALCIHGDKKQDERRWVLNDFKTGKSPILIATDVAS 80

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLDI +   V   D     F       +  IGR  R
Sbjct: 81  RGLDIKDVKFVINYD-----FPNQIEDYVHRIGRTGR 112


>gi|21223535|ref|NP_629314.1| helicase [Streptomyces coelicolor A3(2)]
 gi|9714451|emb|CAC01367.1| putative helicase [Streptomyces coelicolor A3(2)]
          Length = 879

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A DL + L +R      +H ++    R + +R  R GK DVLV  ++   G+D+
Sbjct: 235 TKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDV 292


>gi|89092443|ref|ZP_01165397.1| ATP-dependent DNA helicase RecG [Oceanospirillum sp. MED92]
 gi|89083531|gb|EAR62749.1| ATP-dependent DNA helicase RecG [Oceanospirillum sp. MED92]
          Length = 692

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 7/95 (7%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE LTE L E  +R+  +H  +K  E+ +I++  +  + D+LV   ++  G+D+P   ++
Sbjct: 508 AEQLTEALPE--LRIGLVHGRMKPAEKADIMQKFKSAELDLLVATTVIEVGVDVPNASVM 565

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVIL 688
            I + ++ G       L Q  GR  R +V S  +L
Sbjct: 566 IIENPERLGL----AQLHQLRGRVGRGSVESFCVL 596


>gi|332522488|ref|ZP_08398740.1| ATP-dependent DNA helicase RecG [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313752|gb|EGJ26737.1| ATP-dependent DNA helicase RecG [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 671

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + ++L  Y ++ + R+  MH ++K  ++  I++  +  + D+LV   ++  G+++P   +
Sbjct: 484 LEQELKNY-FQGDARIALMHGKMKNEDKDAIMQAFKNQEIDLLVSTTVIEVGVNVPNATI 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T++
Sbjct: 543 MLIMDADRFGL----SQLHQLRGRVGRGHKQSYALLVANPKTET 582


>gi|315640125|ref|ZP_07895247.1| DNA helicase RecG [Enterococcus italicus DSM 15952]
 gi|315484102|gb|EFU74576.1| DNA helicase RecG [Enterococcus italicus DSM 15952]
          Length = 674

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 6/102 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            +++ E+L E+    N  V  +H ++K  E+ +++   +  +  +LV   ++  G+++P 
Sbjct: 480 AQKIYEELKEFFEPIN-AVGLLHGKMKPSEKEQVMEQFKENQTQILVSTTVIEVGVNVPN 538

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYAD 691
             L+ I+DAD+ G       L Q  GR  R V+ S  IL A+
Sbjct: 539 ATLMIIIDADRFGL----AQLHQLRGRVGRGVSASYCILVAN 576


>gi|301598117|ref|ZP_07243125.1| Type III restriction enzyme, res subunit [Acinetobacter baumannii
           AB059]
          Length = 529

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 15/116 (12%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R  +E+ +D I +A    +        KR  E    Y  E++++   + S  KT  + E+
Sbjct: 274 REDLENGFDHIVMARASSM--------KRAKEIFNIYSKEKDLKPVLIDS--KTKNKTEV 323

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++ +R  +  ++V +N+L EG D+P+  + AI D  K     S   ++Q  GR  R
Sbjct: 324 LKAIRNREHKIIVCVNMLGEGFDLPQLKISAIHDPHK-----SINVMLQFTGRFTR 374


>gi|291395373|ref|XP_002714087.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2
           [Oryctolagus cuniculus]
          Length = 701

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 516 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 575

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 576 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 619


>gi|257481743|ref|ZP_05635784.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330890912|gb|EGH23573.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. mori str.
           301020]
          Length = 691

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L+  L E  +RV  +H  +K  E+  I+ + + G   +LV   ++  G+D+P   L+ 
Sbjct: 507 EELSSALGE--VRVGLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLMI 564

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 565 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 602


>gi|255524857|ref|ZP_05391806.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|255511427|gb|EET87718.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
          Length = 375

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   LY+R    + +HS++   +R  I++  R G F  L+  ++   GLDI  
Sbjct: 248 TKRRVDELEVSLYKRGCDCKKLHSDILQSKRERIMKAFRNGDFQYLIATDVASRGLDIS- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  I + D      S  S I  IGR  R
Sbjct: 307 -GVSHIYNYD---IPESAESYIHRIGRTGR 332


>gi|254491939|ref|ZP_05105118.1| ATP-dependent DNA helicase RecG [Methylophaga thiooxidans DMS010]
 gi|224463417|gb|EEF79687.1| ATP-dependent DNA helicase RecG [Methylophaga thiooxydans DMS010]
          Length = 695

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 15/130 (11%)

Query: 570 DVYDEINLAAQQGLRILLTV--------LTKRMAEDLTEYLYER--NIRVRYMHSEVKTL 619
           DV + +  A QQ  ++            L  + AED    L +   ++R+  +H  +KT 
Sbjct: 473 DVIERVYAACQQQRQVYWVCTLIEESEHLQCQAAEDTATSLQDSLPDLRIGLVHGRMKTK 532

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ++  ++   + G+ D+LV   ++  G+D+P   L+ I +A++ G       L Q  GR  
Sbjct: 533 DKDTVMTAFKEGQLDMLVATTVIEVGVDVPNASLMVIENAERLGL----AQLHQLRGRVG 588

Query: 680 RN-VNSKVIL 688
           R  + S  +L
Sbjct: 589 RGQIESHCVL 598


>gi|120564782|gb|ABM30180.1| VASA2n [Paragonimus westermani]
          Length = 606

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 4/112 (3%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           ++  G+  L+ V TKR A+ L +YL+ +  +V  +H +    +R   +   R G+  +LV
Sbjct: 385 SSDPGVLTLVFVETKRGADSLEDYLFSQKFQVASIHGDRTQDDRELALSCFRNGRTPILV 444

Query: 638 GINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
              +   GLDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 445 ATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGIATSFFNDK 496


>gi|114603672|ref|XP_001145017.1| PREDICTED: DEAD-box protein abstrakt isoform 2 [Pan troglodytes]
          Length = 625

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 438 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 497

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 498 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 546

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 547 VLMDLKALLLEAKQKVPP 564


>gi|157126319|ref|XP_001654592.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882564|gb|EAT46789.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 699

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           ++A+   + ++ V TKR  +D+T  +     R   +H +    ER  ++   R G+  +L
Sbjct: 364 ISAENETKTIIFVETKRRVDDITRNINRNGWRAVSIHGDKSQQERDYVLNAFRNGRQGIL 423

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           V  ++   GLD+ +   V   D     +  +    +  IGR  R+ N+
Sbjct: 424 VATDVAARGLDVEDVKFVINYD-----YPSNSEDYVHRIGRTGRSNNT 466


>gi|91788228|ref|YP_549180.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91697453|gb|ABE44282.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 422

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TK  AE + + L + +I     H E+   +R ++++D R+    V+V  ++  
Sbjct: 251 RALVFVATKHAAEIVADKLRKVHIEAEPFHGELSQGKRTQVLQDFRIKAVQVVVATDVAA 310

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            G+DI +  +V   D       RS       IGR  R   S
Sbjct: 311 RGIDIAQMPVVVNYD-----LPRSAVDYTHRIGRTGRAGES 346


>gi|82544418|ref|YP_408365.1| transcription-repair coupling factor [Shigella boydii Sb227]
 gi|81245829|gb|ABB66537.1| transcription-repair coupling factor [Shigella boydii Sb227]
 gi|320175622|gb|EFW50714.1| Transcription-repair coupling factor [Shigella dysenteriae CDC
           74-1112]
 gi|320184241|gb|EFW59055.1| Transcription-repair coupling factor [Shigella flexneri CDC 796-83]
 gi|332094450|gb|EGI99499.1| transcription-repair coupling factor [Shigella boydii 3594-74]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|71733507|ref|YP_272494.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554060|gb|AAZ33271.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322268|gb|EFW78364.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331916|gb|EFW87854.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 691

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L+  L E  +RV  +H  +K  E+  I+ + + G   +LV   ++  G+D+P   L+ 
Sbjct: 507 EELSSALGE--VRVGLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLMI 564

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 565 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 602


>gi|70733354|ref|YP_263129.1| ATP-dependent DNA helicase RecG [Pseudomonas fluorescens Pf-5]
 gi|68347653|gb|AAY95259.1| ATP-dependent DNA helicase RecG [Pseudomonas fluorescens Pf-5]
          Length = 691

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL+  L E  +RV  +H  +K  E+  ++ + + G   +LV   ++  G+D+P   L+ 
Sbjct: 507 EDLSSALGE--LRVGLIHGRMKAPEKAAVMAEFKAGNLQLLVATTVIEVGVDVPNASLMI 564

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I + ++ G       L Q  GR  R   +   V+LY   +++
Sbjct: 565 IENPERLGL----AQLHQLRGRVGRGSAASHCVLLYHPPLSQ 602


>gi|73620772|sp|Q91VN6|DDX41_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX41; AltName:
           Full=DEAD box protein 41
 gi|15030112|gb|AAH11308.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Mus musculus]
          Length = 622

 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 495 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 543

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 544 VLMDLKALLLEAKQKVPP 561


>gi|313637333|gb|EFS02818.1| primosomal protein N' [Listeria seeligeri FSL S4-171]
          Length = 797

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     +++R  R  + D+L+G  ++ +GLD P
Sbjct: 558 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLRSFRNHEADILLGTQMIAKGLDFP 616

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 617 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 655


>gi|315303728|ref|ZP_07874239.1| primosomal protein N' [Listeria ivanovii FSL F6-596]
 gi|313627905|gb|EFR96527.1| primosomal protein N' [Listeria ivanovii FSL F6-596]
          Length = 319

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     +++R  R  + D+L+G  ++ +GLD P
Sbjct: 80  TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLRSFRNHEADILLGTQMIAKGLDFP 138

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 139 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 177


>gi|311031130|ref|ZP_07709220.1| DEAD/DEAH box helicase domain protein [Bacillus sp. m3-13]
          Length = 507

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L++ L  R      +H ++   +R+ ++R  + G  DVLV  ++   GLDI  
Sbjct: 249 TKRRVDELSDALNVRGYSAEGIHGDLSQAKRMSVLRKFKEGSIDVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGR 333


>gi|302524385|ref|ZP_07276727.1| cold-shock DEAD-box protein [Streptomyces sp. AA4]
 gi|302433280|gb|EFL05096.1| cold-shock DEAD-box protein [Streptomyces sp. AA4]
          Length = 522

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL ++ +  TKR A+ + + L ER      +H ++    R + +R  R GK DVLV
Sbjct: 232 AEGRGLTMIFS-RTKRTAQKIADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLV 290

Query: 638 GINLLREGLDI 648
             ++   G+DI
Sbjct: 291 ATDVAARGIDI 301


>gi|315585905|gb|ADU40286.1| DNA helicase RecG [Helicobacter pylori 35A]
          Length = 621

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFT-MAKVIE 190
           N+S+ +  F     +  + DQ  AI  +   + S    + L++G  G GKT   +A ++ 
Sbjct: 216 NNSERLKAFITSLPFKLTNDQQNAIKAIQSDLTSPIACKRLIIGDVGCGKTMVILASMVL 275

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           A     ++MAP  ILA QLY+E   F P
Sbjct: 276 AYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|260867476|ref|YP_003233878.1| transcription-repair coupling factor Mfd [Escherichia coli O111:H-
           str. 11128]
 gi|257763832|dbj|BAI35327.1| transcription-repair coupling factor Mfd [Escherichia coli O111:H-
           str. 11128]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.7 bits (86), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|229100846|ref|ZP_04231656.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-28]
 gi|228682572|gb|EEL36639.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-28]
          Length = 621

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV Y H ++   E   ++     G+ DVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 303 DARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGL- 361

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 362 ---SQLYQLRGRVGRS 374


>gi|241958758|ref|XP_002422098.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223645443|emb|CAX40099.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 440

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 9/88 (10%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE L   L + + RV  +HSE+   ER   +   + G   +L+  ++   GLDIP   LV
Sbjct: 266 AEVLRRMLRKLDFRVASLHSEMPQSERTNSLHRFKAGAARILIATDVASRGLDIPTVELV 325

Query: 655 AILD--ADKEGFLRSKTSLIQTIGRAAR 680
              D  AD + F       I  +GR AR
Sbjct: 326 INFDIPADPDDF-------IHRVGRTAR 346


>gi|255570116|ref|XP_002526020.1| conserved hypothetical protein [Ricinus communis]
 gi|223534667|gb|EEF36360.1| conserved hypothetical protein [Ricinus communis]
          Length = 983

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 87/201 (43%), Gaps = 20/201 (9%)

Query: 521 LRPTTIVVSATP--GSWELEQCQGIIVEQIIR-PTGLVDPPVEIRSARTQ-VEDVYDEIN 576
           + P  + +SATP   +  L     + + QI   P G +     I    +Q  ED+Y  I 
Sbjct: 706 MAPHILAMSATPIPRTLALALYGDMSLTQITDLPPGRIPVETHIIEGNSQGFEDIYKMIL 765

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEY---------LYERNIRVR--YMHSEVKTLERIEII 625
              + G R+ L       +E L +          + +R  R     +H  +K+ E+ E +
Sbjct: 766 DELEAGGRVYLVYPVIEQSEQLPQLRAASADLQAISDRFQRFNCGLLHGRMKSDEKDEAL 825

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NS 684
           R  R G+  +L+   ++  G+D+P+  ++ +++A++ G       L Q  GR  R    S
Sbjct: 826 RRFRSGETQILLSTQVIEVGVDVPDASMMVVMNAERFGI----AQLHQLRGRVGRGERKS 881

Query: 685 KVILYADTITKSIQLAIDETT 705
           K IL   T +   +L + E +
Sbjct: 882 KCILLGSTSSSLNRLKVLEKS 902


>gi|260800652|ref|XP_002595212.1| hypothetical protein BRAFLDRAFT_238703 [Branchiostoma floridae]
 gi|229280456|gb|EEN51224.1| hypothetical protein BRAFLDRAFT_238703 [Branchiostoma floridae]
          Length = 407

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE +  R+  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 282 TRRKVDWLTEKMSGRDFTVSAMHGDMDQRERDLIMREFRSGSSRVLITTDLLARGIDVQQ 341

Query: 651 CGLV 654
             LV
Sbjct: 342 VSLV 345


>gi|160380699|sp|A7EYW0|DBP3_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp3
          Length = 596

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 46/96 (47%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE R    ++  +  +    +Q+  RIL+  L K+ A  +  ++ ++  RV  +H ++  
Sbjct: 409 VEPRDKEYRLMQLLKQYQSGSQKDDRILVFCLYKKEATRVEGFIRQKGFRVAGIHGDLSQ 468

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            +R   +   + G   VLV  ++   GLDIP   LV
Sbjct: 469 EQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLV 504


>gi|156057455|ref|XP_001594651.1| eukaryotic initiation factor 4A [Sclerotinia sclerotiorum 1980]
 gi|160395529|sp|A7EGL7|IF4A_SCLS1 RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|154702244|gb|EDO01983.1| eukaryotic initiation factor 4A [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 398

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH ++   +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 273 TRRKVDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQ 332

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 333 VSLVINYDLPANRENYI 349


>gi|71903679|ref|YP_280482.1| phage DNA/RNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71802774|gb|AAX72127.1| phage DNA/RNA helicase [Streptococcus pyogenes MGAS6180]
          Length = 455

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 33/49 (67%), Gaps = 2/49 (4%)

Query: 605 RNIRVRYMHSEVKT--LERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +++ +  +H++ KT   +R +I++D R GK  V+  ++L+ EG D+P+C
Sbjct: 210 QSMGINAIHADAKTPKAKRDKIMKDFRDGKIQVICNVDLISEGFDVPDC 258


>gi|157108214|ref|XP_001650127.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|65306807|gb|AAY41941.1| vasa-like protein [Aedes aegypti]
 gi|108879362|gb|EAT43587.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 638

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 44/107 (41%), Gaps = 5/107 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A      L+ V TKR A+ L   L E       +H +    ER E +RD + GK  +L
Sbjct: 457 LEADDPTGTLVFVETKRNADYLASLLSETKFPTTSIHGDRLQREREEALRDFKSGKMFIL 516

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  ++   GLDI     V   D  K     S    +  IGR  R  N
Sbjct: 517 IATSVAARGLDIKNVAHVVNYDLPK-----SIDDYVHRIGRTGRVGN 558


>gi|75076134|sp|Q4R5S7|DDX4_MACFA RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog
 gi|67970411|dbj|BAE01548.1| unnamed protein product [Macaca fascicularis]
          Length = 725

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 543 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 602

Query: 644 EGLDI 648
            GLDI
Sbjct: 603 RGLDI 607


>gi|134111599|ref|XP_775335.1| hypothetical protein CNBE0530 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257994|gb|EAL20688.1| hypothetical protein CNBE0530 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 605

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 37/71 (52%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RIL+  L K+ A+ L   +      V  +H ++    R + +   + G+ +VLV  ++  
Sbjct: 441 RILVFALYKKEAQRLEYTIRRAGYAVGALHGDMTQEARFKALEAFKTGQQNVLVATDVAA 500

Query: 644 EGLDIPECGLV 654
            GLDIP+ GLV
Sbjct: 501 RGLDIPDVGLV 511


>gi|330972219|gb|EGH72285.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 691

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 590 LTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           LT + AE   E L     ++RV  +H  +K  E+  I+ + + G   +LV   ++  G+D
Sbjct: 497 LTCKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVD 556

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           +P   L+ I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 557 VPNSSLMIIENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 602


>gi|330007678|ref|ZP_08306017.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. MS 92-3]
 gi|328535359|gb|EGF61841.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. MS 92-3]
          Length = 421

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 575 INLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +NL  Q +  R ++ V  +    +L  +L E  I   ++  E+   +R E I+ L  G+ 
Sbjct: 240 VNLLQQPEATRAIVFVRKRERVHELANWLREAGINTCWLEGEMVQAKRNEAIKRLTDGRV 299

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +VL+  ++   G+DIP+   V   D       R+  + +  IGR  R
Sbjct: 300 NVLIATDVAARGIDIPDVSHVFNFD-----MPRTADTYLHRIGRTGR 341


>gi|320179184|gb|EFW54142.1| Transcription-repair coupling factor [Shigella boydii ATCC 9905]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|312214509|emb|CBX94500.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1118

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 7/122 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           SA+ Q   ++D I     Q  R L+   +K  A+ + ++LY + + V  +HS+    ER 
Sbjct: 369 SAKNQA--LFDLIFSEGPQ--RTLVFTNSKVKADVVDDFLYNKGLPVTSIHSDRTQRERE 424

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK-TSLIQTIGRAARN 681
           + +R  R G+  ++V   +   GLD+    +  +++ D      S  T  +  IGR AR 
Sbjct: 425 DALRSFRTGRCPIMVATGVTARGLDV--ANVKHVINYDLPSTQHSGITEYVHRIGRTARI 482

Query: 682 VN 683
            N
Sbjct: 483 GN 484


>gi|307278457|ref|ZP_07559532.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
 gi|306504963|gb|EFM74158.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
          Length = 536

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  +   +H ++   +R+ ++R  + G  D+LV  ++   GLDI  
Sbjct: 269 TKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDI-- 326

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 327 SGVTHVYNYD---IPQDPESYVHRIGRTGR 353


>gi|298484810|ref|ZP_07002910.1| ATP-dependent DNA helicase RecG [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160664|gb|EFI01685.1| ATP-dependent DNA helicase RecG [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 691

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L+  L E  +RV  +H  +K  E+  I+ + + G   +LV   ++  G+D+P   L+ 
Sbjct: 507 EELSSALGE--VRVGLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLMI 564

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 565 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 602


>gi|284161344|ref|YP_003399967.1| DEAD/DEAH box helicase [Archaeoglobus profundus DSM 5631]
 gi|284011341|gb|ADB57294.1| DEAD/DEAH box helicase domain protein [Archaeoglobus profundus DSM
           5631]
          Length = 736

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++EI+   R G   VLV  ++  EGLDIPE  LV   +A     + S+   IQ  GR  
Sbjct: 409 EQVEIVERFRAGDIKVLVATSVGEEGLDIPEVDLVVFYEA-----IPSEIRSIQRKGRTG 463

Query: 680 RNVNSKVIL 688
           R    ++++
Sbjct: 464 RKKEGRIVV 472


>gi|301112328|ref|XP_002905243.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262095573|gb|EEY53625.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 709

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V  K  A +L   L    + +  +H++    +R ++IR  R G+  VL+  +L+  G+D 
Sbjct: 501 VQNKERANELYHELLYDGVNIGAVHADRTKEQRDDVIRRFRTGEVWVLICTDLMSRGMDF 560

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
               +V   D     F +S  S I  IGR  RN
Sbjct: 561 KAVNMVINYD-----FPQSAVSYIHRIGRTGRN 588


>gi|241954988|ref|XP_002420215.1| ATP-dependent RNA helicase, helicase; DEAD box helicase, putative
           [Candida dubliniensis CD36]
 gi|223643556|emb|CAX42438.1| ATP-dependent RNA helicase, helicase [Candida dubliniensis CD36]
          Length = 1132

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EII+  + G F++LV  ++  EGLDI E  L+   D+       S    IQ +GR  R  
Sbjct: 536 EIIKKFKQGVFNILVATSIGEEGLDIGEVDLIICYDS-----TSSPIKNIQRMGRTGRKR 590

Query: 683 NSKVIL 688
           + KV++
Sbjct: 591 DGKVLM 596


>gi|222640112|gb|EEE68244.1| hypothetical protein OsJ_26445 [Oryza sativa Japonica Group]
          Length = 2897

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 6/108 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I  A ++G ++++   TK+M + L   +  R+     +H +    ER  ++   R G+
Sbjct: 839 EQILRAQERGSKVIIFCSTKKMCDQLARDI-GRSFGAASIHGDKSQAERDNVLNQFRTGR 897

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +LV  ++   GLDI +  +V   D     F       +  IGR  R
Sbjct: 898 APILVATDVAARGLDIKDIRVVINYD-----FPTGIEDYVHRIGRTGR 940


>gi|215428688|ref|ZP_03426607.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T92]
          Length = 280

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ + + L ER   V  +H ++  L R + ++  R G  DVLV  ++   G+DI
Sbjct: 128 TKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDI 185


>gi|91179152|gb|ABE27760.1| pl10-like protein [Chlamys farreri]
          Length = 760

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N AA      L  V TK+ A+ L ++L         +H +    ER E +R  R G 
Sbjct: 531 DLLNAAAGPEALTLTFVETKKGADALEDFLIVEGYPATSIHGDRSQKEREEALRQFRNGD 590

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
             +LV   +   GLDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 591 RPILVATAVAARGLDIPNVRHVVNFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEK 647


>gi|162605914|ref|XP_001713472.1| RNA helicase [Guillardia theta]
 gi|6690145|gb|AAF24010.1|AF083031_7 RNA helicase [Guillardia theta]
          Length = 381

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +A+ +T++ Y       ++H++++   R +I  D R+GK  +LV  +L+  G+DIP   L
Sbjct: 265 LAKKITDFGYP----CYFIHAKMRLDIRNKIFHDFRIGKSKLLVSSDLITRGIDIPNINL 320

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR 680
           V   D        S  S +  IGR  R
Sbjct: 321 VVNFDLP-----LSSESYLHRIGRTGR 342


>gi|58268018|ref|XP_571165.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|74685312|sp|Q5KHB7|DBP3_CRYNE RecName: Full=ATP-dependent RNA helicase DBP3
 gi|57227399|gb|AAW43858.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 605

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 37/71 (52%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RIL+  L K+ A+ L   +      V  +H ++    R + +   + G+ +VLV  ++  
Sbjct: 441 RILVFALYKKEAQRLEYTIRRAGYAVGALHGDMTQEARFKALEAFKTGQQNVLVATDVAA 500

Query: 644 EGLDIPECGLV 654
            GLDIP+ GLV
Sbjct: 501 RGLDIPDVGLV 511


>gi|330897621|gb|EGH29040.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 338

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 55/277 (19%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           A +L  E K F P   V +F  +    YD + P       D   ++ +S+  ++  + H 
Sbjct: 51  AERLEQELKFFAPTLPVLHFPDWETLPYDLFSPH-----QDIISQRIASLY-RLPELEHG 104

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
                      +VV   + ++ +   +      + L +G  ++ + + + L    Y+  D
Sbjct: 105 ----------VLVVPITTALHRLAPTKFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVD 154

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
                G F V G  I++FP     + +R+ +F ++IE +  F P T + I  VE++++  
Sbjct: 155 TVYEHGEFTVRGALIDLFPMG-SKLPFRIDLFDDEIETLRTFDPDTQRSIDKVESVRL-- 211

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD------LEMLET 435
                                L  R   L+KE       R  +R   D       + L +
Sbjct: 212 ---------------------LPAREFPLQKEEVTRFKARFRERFDVDFRRSPIFQDLSS 250

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             +   IE Y          E   TLF+Y+P+D+ +F
Sbjct: 251 GITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF 282


>gi|330997507|ref|ZP_08321355.1| helicase protein [Paraprevotella xylaniphila YIT 11841]
 gi|329570452|gb|EGG52179.1| helicase protein [Paraprevotella xylaniphila YIT 11841]
          Length = 772

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 12/128 (9%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           + + R  +E +Y+ +   A  G + ++  ++   A ++  Y     I    + S+   L+
Sbjct: 214 VLNKRPTIEKLYESVRHYAD-GKKGVVYAISIGHARNIASYYSGHGINAVAIDSKTPALQ 272

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL---IQTIGR 677
           R + + D + G+  VLV +++  EG D P+   V +         R   SL   +Q +GR
Sbjct: 273 RKQFVEDFKQGRIQVLVNVDVFSEGFDCPDIEFVQM--------ARPTLSLAKYLQQVGR 324

Query: 678 AARNVNSK 685
             R    K
Sbjct: 325 GLRKSKGK 332


>gi|326798757|ref|YP_004316576.1| transcription-repair coupling factor [Sphingobacterium sp. 21]
 gi|326549521|gb|ADZ77906.1| transcription-repair coupling factor [Sphingobacterium sp. 21]
          Length = 1112

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 86/210 (40%), Gaps = 12/210 (5%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G+ GS    T     +  +RP I + P+   AA   S+ +       V +F S   Y 
Sbjct: 32  LKGMIGSADAITAVSSYQLQERPFIFVLPDYEEAAFFLSDLEGLL-DKQVLFFPS--SYR 88

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           +P  +      ++ + +   E +  + H++     E    IV    +    + +    S+
Sbjct: 89  KPFDFTQADSAHVLQRA---ETLSTLNHTS-----ELPKMIVTYPEALAEKVINRTELSK 140

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             +++ I   ++   +   L++  ++R D     G F + G  ++IF S   D+ +R+  
Sbjct: 141 NTLEISINAKLDIDFINEFLIEYDFERVDFVYEPGQFAIRGGIVDIF-SFSNDLPYRIEF 199

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           FGN +E I  F       +  + T+ I  N
Sbjct: 200 FGNLVESIRTFDTENQLSVNKIHTVTIVPN 229


>gi|326511343|dbj|BAJ87685.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 410

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 36/64 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE L+ R   V  MH +++   R  ++++ R G   VL+  +LL  G+D+ +
Sbjct: 285 TRRKVDWLTEKLHSREFTVSAMHGDMEMQAREVVMKEFRSGSSRVLIATDLLARGIDVQQ 344

Query: 651 CGLV 654
             LV
Sbjct: 345 VSLV 348


>gi|296111607|ref|YP_003621989.1| transcription-repair coupling factor [Leuconostoc kimchii IMSNU
           11154]
 gi|295833139|gb|ADG41020.1| transcription-repair coupling factor [Leuconostoc kimchii IMSNU
           11154]
          Length = 1174

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 63/319 (19%), Positives = 124/319 (38%), Gaps = 42/319 (13%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +    QLLLGV GS +  ++A +     R  +V+   +  A QL+S+             
Sbjct: 20  TEHSAQLLLGVNGSARAASIASLYSGRPRQMLVVTDTQAHADQLFSDLSGLM-------- 71

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYG- 283
                   P    P  ++ +  E +I+    R++   T   L R +  I+V+S++ +   
Sbjct: 72  -------SPVLNFPSEES-LATEMAISSPDLRLQRIETLLALRRGEKKIIVTSIAGVERL 123

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +    S  +  +   +G + +  E+ S+L+   Y    +    G F   G  I+I+P   
Sbjct: 124 LPQPVSLDEAYLSFTVGQNYDLNEIKSTLMMMGYTPTKLVQGAGEFAQRGAIIDIYPLTS 183

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           +D   R+  F  +++++ +F   T +    ++ + I   + ++        A   I+++ 
Sbjct: 184 DD-PIRLDFFDTELDQLKQFDVATQKSTTVLKQVVIQPATDFIVSEAQYQAAKIAIEKDF 242

Query: 404 KMRLIEL-------EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
                 L         +G +L    L +R                +  Y+ Y  G     
Sbjct: 243 SQHRTTLTGVNKKHATDGFMLTQHVLNER-----------ERGNQLLPYAAYFFG----- 286

Query: 457 PPPTLFEYIPEDSLLFVDE 475
              TL +Y  +D+LL VDE
Sbjct: 287 GVTTLRDYFTKDALLIVDE 305



 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H ++   +   I+ D   G +DVLV   ++  G+DIP    + + +AD  G    
Sbjct: 854 RVAAIHGQMSETQLESILYDFLNGNYDVLVTTTIIETGVDIPNANTLIVENADHMGL--- 910

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 911 -SQLYQLRGRVGRS 923


>gi|291395371|ref|XP_002714086.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1
           [Oryctolagus cuniculus]
          Length = 729

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 544 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 603

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 604 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 647


>gi|289571171|ref|ZP_06451398.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T17]
 gi|289544925|gb|EFD48573.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T17]
          Length = 315

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           +R+  MH  +   ++   +   R G+ DVLV   ++  G+D+P   ++ ++DAD+ G   
Sbjct: 136 LRLALMHGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGI-- 193

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTI 693
             + L Q  GR  R  +  V L A  +
Sbjct: 194 --SQLHQLRGRIGRGEHPSVCLLASWV 218


>gi|254581840|ref|XP_002496905.1| ZYRO0D10802p [Zygosaccharomyces rouxii]
 gi|238939797|emb|CAR27972.1| ZYRO0D10802p [Zygosaccharomyces rouxii]
          Length = 650

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 5/100 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           LL  +  +  + L        I+   + SE K  ER +II + + G   VL+   +  EG
Sbjct: 267 LLFAVDIKHVKALHHLFVSYGIKAECVTSETKARERDQIIDNFKKGDVKVLINCGIFTEG 326

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D+P  G+  IL        RS++ L+Q IGR  R  +SK
Sbjct: 327 TDMP--GIDCILLCRPT---RSRSLLVQMIGRGLRLHHSK 361


>gi|237712236|ref|ZP_04542717.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229453557|gb|EEO59278.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 784

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 13/166 (7%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           T +  +Y+ +   A  G + ++  ++   A  +  Y     +    + S    LER E++
Sbjct: 230 TGIRQLYESVRRYAA-GKKGIVYAVSIAHARQIAAYYSLHGVESVAIDSRTPALERKELV 288

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL---IQTIGRAARNV 682
            D R GK  VLV +++  EG D P+   V +         R   SL   +Q +GR  R  
Sbjct: 289 EDFRRGKISVLVNVDIFSEGFDCPDVEFVQL--------ARPTLSLAKYLQQVGRGLRKS 340

Query: 683 NSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           ++K   +  D +       +    R  E   E     N  P++  E
Sbjct: 341 DNKESCVLIDNVGLHRIFGLPVRDRDWEAMFEGRMAGNAQPRTRME 386


>gi|207725326|ref|YP_002255722.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|206590561|emb|CAQ37523.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
          Length = 633

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I+ T  TKR A+ L E L E       +H ++    R   +  LR G   +LV  ++   
Sbjct: 329 IVFTA-TKRDADSLAERLTETGFAAGALHGDMHQGARNRTLTALRRGHLRILVATDVAAR 387

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           G+D+P+   V   D  K+         +  IGR  R   S + +
Sbjct: 388 GIDVPDITHVVNFDLPKQA-----EDYVHRIGRTGRAGRSGIAI 426


>gi|160935086|ref|ZP_02082472.1| hypothetical protein CLOLEP_03962 [Clostridium leptum DSM 753]
 gi|156866539|gb|EDO59911.1| hypothetical protein CLOLEP_03962 [Clostridium leptum DSM 753]
          Length = 682

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 5/89 (5%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           R+ RV  +H  +K  E+  ++R    G+ D+LV   ++  G+D+P   ++ I +A++ G 
Sbjct: 499 RDYRVGLLHGRMKPAEKEAVMRAFSRGELDLLVSTTVIEVGVDVPNAVIMLIENAERFGL 558

Query: 665 LRSKTSLIQTIGRAARNV-NSKVILYADT 692
               + L Q  GR  R    S  IL +D 
Sbjct: 559 ----SQLHQLRGRVGRGKEKSYCILVSDA 583


>gi|149912292|ref|ZP_01900862.1| putative transcription-repair coupling factor [Moritella sp. PE36]
 gi|149804626|gb|EDM64687.1| putative transcription-repair coupling factor [Moritella sp. PE36]
          Length = 1106

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 83/188 (44%), Gaps = 12/188 (6%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS   FT+A++    + P + +  +   A +L  E ++F   +  +  +++ D+    
Sbjct: 24  LVGSSLAFTLAELCAQTKFPILAVVADTPSALKLEQEVRHFLADD--KPLITFPDW---- 77

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
             +P  D +   +  I+++I    H+  R     +  I+VS  + +  I  V   +Q  +
Sbjct: 78  ETLP-YDNFSPHQDIISQRI----HALHRFQQTTSGLIIVSVNTLMQRIAPVSFLAQHSL 132

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD ++   +   L    Y   D  +  G F   G  ++++P       +R+  F +
Sbjct: 133 IVKTGDKIDMHAMRKRLETSGYHAVDQVLEHGEFSARGSILDLYPMG-SSSPFRIDFFDD 191

Query: 356 DIEEISEF 363
           ++EEI  F
Sbjct: 192 EVEEIRGF 199


>gi|149376584|ref|ZP_01894344.1| transcription-repair coupling protein Mfd [Marinobacter algicola
           DG893]
 gi|149359102|gb|EDM47566.1| transcription-repair coupling protein Mfd [Marinobacter algicola
           DG893]
          Length = 1038

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AEDL + + E   RV   H +++  E  +I+ D    +F+VLV   ++  G+DIP  
Sbjct: 717 EKTAEDLRQLIPE--ARVGVAHGQMRERELEQIMSDFYHKRFNVLVCTTIIETGIDIPSA 774

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 775 NTIIIERADKFGL----AQLHQLRGRVGRS 800


>gi|29829640|ref|NP_824274.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29606748|dbj|BAC70809.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 759

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A DL + L +R      +H ++    R + +R  R GK DVLV  ++   G+D+
Sbjct: 235 TKRTAADLADQLQQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDV 292


>gi|19746262|ref|NP_607398.1| hypothetical protein spyM18_1291 [Streptococcus pyogenes MGAS8232]
 gi|19748449|gb|AAL97897.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232]
          Length = 455

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 33/49 (67%), Gaps = 2/49 (4%)

Query: 605 RNIRVRYMHSEVKT--LERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +++ +  +H++ KT   +R +I++D R GK  V+  ++L+ EG D+P+C
Sbjct: 210 QSMGINAIHADAKTPKAKRDKIMKDFRDGKIQVICNVDLISEGFDVPDC 258


>gi|33598622|ref|NP_886265.1| putative primosomal protein [Bordetella parapertussis 12822]
 gi|33574751|emb|CAE39410.1| putative primosomal protein [Bordetella parapertussis]
          Length = 700

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R+ E L E+  +  I      S  +      +   +  G+ D++VG  ++ +G D   
Sbjct: 458 TQRIEEQLAEWFPQARIARIDADSTRRKGSAQALFAAVHAGEVDIMVGTQMVAKGHDFAR 517

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAARNVNSKVIL 688
            GLV +L+AD   F        R    L+Q  GRA R+     +L
Sbjct: 518 LGLVGVLNADSMLFAHDFRAPERLFAQLMQVAGRAGRHAAGAQVL 562


>gi|191168584|ref|ZP_03030368.1| transcription-repair coupling factor [Escherichia coli B7A]
 gi|209918370|ref|YP_002292454.1| transcription-repair coupling factor [Escherichia coli SE11]
 gi|218553691|ref|YP_002386604.1| transcription-repair coupling factor [Escherichia coli IAI1]
 gi|218694647|ref|YP_002402314.1| transcription-repair coupling factor [Escherichia coli 55989]
 gi|260854597|ref|YP_003228488.1| transcription-repair coupling factor Mfd [Escherichia coli O26:H11
           str. 11368]
 gi|190901378|gb|EDV61143.1| transcription-repair coupling factor [Escherichia coli B7A]
 gi|209911629|dbj|BAG76703.1| transcription-repair coupling factor [Escherichia coli SE11]
 gi|218351379|emb|CAU97085.1| transcription-repair coupling factor [Escherichia coli 55989]
 gi|218360459|emb|CAQ98013.1| transcription-repair coupling factor [Escherichia coli IAI1]
 gi|257753246|dbj|BAI24748.1| transcription-repair coupling factor Mfd [Escherichia coli O26:H11
           str. 11368]
 gi|323156751|gb|EFZ42887.1| transcription-repair coupling factor [Escherichia coli EPECa14]
 gi|323175269|gb|EFZ60882.1| transcription-repair coupling factor [Escherichia coli LT-68]
 gi|323947582|gb|EGB43586.1| transcription-repair coupling protein [Escherichia coli H120]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|332186186|ref|ZP_08387932.1| transcription-repair coupling factor [Sphingomonas sp. S17]
 gi|332014001|gb|EGI56060.1| transcription-repair coupling factor [Sphingomonas sp. S17]
          Length = 1155

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q++ +L  G+ +  ++L + L    Y R +    +G F V G  +++FPS  E+ A R+ 
Sbjct: 125 QLVARLAPGERIGLEKLSTLLQANGYVRTETVHDQGEFAVRGGLVDLFPSG-EEQALRLD 183

Query: 352 MFGNDIEEISEFYP 365
            FG++IE +  F P
Sbjct: 184 FFGDEIESVRTFDP 197



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 11/123 (8%)

Query: 589 VLTKRMAE--DLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ++T R+A+  D+ EYL +    VRY+  H ++   E  E +      KF+VLV   ++  
Sbjct: 824 LVTPRVADLPDIEEYLRKEVPEVRYVVAHGQMSPTEVEERMSAFYDRKFEVLVSTTIIES 883

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+DIP    + +  AD+ G       L Q  GR  R   SK   YA  +T   ++  +  
Sbjct: 884 GIDIPSANTMIVNRADRFGL----AQLYQLRGRVGR---SKTRAYAYMVTPPERMMTEAA 936

Query: 705 TRR 707
            +R
Sbjct: 937 EKR 939


>gi|325284506|ref|YP_004257045.1| type III restriction protein res subunit [Deinococcus proteolyticus
           MRP]
 gi|324316680|gb|ADY27791.1| type III restriction protein res subunit [Deinococcus proteolyticus
           MRP]
          Length = 471

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 13/156 (8%)

Query: 575 INLAAQQGLRILLTVLTKRMAE--------DLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           I    +  LR+L  +L +  +E        + T Y   R   +  +  +  T ER  ++ 
Sbjct: 312 IAYGTEGKLRVLEEILAQHPSERTIIFTNDNATVYRISREFLIPSITHQTPTKERHTLLE 371

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R G++ +LV   +L EG+D+PE  +  +L         ++   IQ +GR  R    K 
Sbjct: 372 RFRAGEYRLLVTSRVLNEGVDVPEASVAVVLSGTS-----TEREHIQRLGRILRRAQGKK 426

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
            +  + IT+          RR + Q       +I P
Sbjct: 427 AVLYEVITEGTTEERISQQRRGQWQPAGEAGPDIGP 462


>gi|316957340|gb|EFV47075.1| ATP-dependent RNA helicase vasa [Trichinella spiralis]
          Length = 180

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+ V  KRMA+ ++  L     +   +H + +  ER + +R+ + GK +VLV  ++  
Sbjct: 10  KILIFVSRKRMADIVSMELLNNGFKSTSIHGDREQYEREKALRNFKQGKANVLVATDVAA 69

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLDI     V   D  K          +  IGR  R
Sbjct: 70  RGLDIAGVDYVINFDMPK-----CVDDYVHRIGRTGR 101


>gi|317470864|ref|ZP_07930245.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
 gi|316901691|gb|EFV23624.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 478

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+ M   L + L  + I    +H +++  ER++ +   R G F  L+  ++   G+D  E
Sbjct: 250 TREMTNVLFQKLRRKRIFCGMLHGDMEQRERLKTVDAFRRGGFRFLIATDVAARGIDFEE 309

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
              V   D     F   K + +  IGR  RN NS
Sbjct: 310 ISHVVNYD-----FPTGKETYVHRIGRTGRNGNS 338


>gi|315303712|ref|ZP_07874226.1| ATP-dependent DNA helicase RecG [Listeria ivanovii FSL F6-596]
 gi|313627925|gb|EFR96544.1| ATP-dependent DNA helicase RecG [Listeria ivanovii FSL F6-596]
          Length = 457

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 282 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 337

Query: 672 IQTIGRAARNVN-SKVILYADTITK 695
            Q  GR  R  + S  IL AD  T+
Sbjct: 338 HQLRGRVGRGADQSYCILIADPKTE 362


>gi|302414618|ref|XP_003005141.1| ATP-dependent RNA helicase eIF4A [Verticillium albo-atrum VaMs.102]
 gi|261356210|gb|EEY18638.1| ATP-dependent RNA helicase eIF4A [Verticillium albo-atrum VaMs.102]
          Length = 397

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH ++   +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 272 TRRKVDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQ 331

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 332 VSLVINYDLPANRENYI 348


>gi|260779597|ref|ZP_05888487.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604406|gb|EEX30710.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 733

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF---LRSKTSL----IQTIGR 677
           + D+R GK+ +L+G  +L +G   P+  LVA+LD D   +    R+   L    IQ  GR
Sbjct: 525 LGDIRSGKYQILIGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGR 584

Query: 678 AAR 680
           A R
Sbjct: 585 AGR 587


>gi|126733715|ref|ZP_01749462.1| Possible DNA helicase [Roseobacter sp. CCS2]
 gi|126716581|gb|EBA13445.1| Possible DNA helicase [Roseobacter sp. CCS2]
          Length = 1873

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 12/157 (7%)

Query: 560 EIRSARTQVE--DVYDEINLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           ++RS R + +  D+YD I+    Q  R   ++   +++  E +  +L  + +   + H+ 
Sbjct: 509 DVRSTRKEAKLGDIYDVISEMLPQDGRSGAVVYCSSRKSTERVAAFLAHQGMAAAHFHAG 568

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +   E+ +     R+G   V+   N    G+D P+  LV  +  D  G L    + +Q  
Sbjct: 569 LSPDEKKDTQEKFRIGDLRVIAATNAFGMGIDKPDIRLV--IHCDIPGSLE---NYLQEA 623

Query: 676 GRAARNVNSK--VILYA-DTITKSIQLAIDETTRRRE 709
           GRA R+      V+LYA D + +  QL+      R E
Sbjct: 624 GRAGRDRQDANCVLLYAIDDVERQFQLSARSRLARHE 660


>gi|126306582|ref|XP_001377534.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
           [Monodelphis domestica]
          Length = 719

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +L+ V  K  A+ L++ +++   +R   MHS+   +ER  I++ L  G+++V+V   +L 
Sbjct: 450 VLVFVDCKLGADLLSDAVHKITGLRSISMHSDKSQMERTSILQGLFQGEYEVVVSTGVLG 509

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSI 697
            GLD+    LV   D        S    +  +GRA R   N   I + +  TK +
Sbjct: 510 RGLDLINVTLVVNFDMPS-----SMDEYVHQVGRAGRLGHNGTAITFINNNTKKL 559


>gi|187479680|ref|YP_787705.1| primosomal protein N' [Bordetella avium 197N]
 gi|115424267|emb|CAJ50820.1| primosomal protein N' [Bordetella avium 197N]
          Length = 682

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R+ E L E   E  I      S  +      +   +  G+ D+LVG  ++ +G D   
Sbjct: 446 TQRVEEHLAELFPEARIARIDADSTRRKGSAQALFASVHAGEVDILVGTQMVAKGHDFSR 505

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAARNVNSKVIL 688
            GLV +L+AD   F        R    L+Q  GRA R+     +L
Sbjct: 506 LGLVGVLNADSMLFSQDFRAPERLFAQLLQVAGRAGRHTGGGEVL 550


>gi|299362|gb|AAB26029.1| Mfd protein, transcription repair coupling factor, TRCF=mfd product
           [Escherichia coli, Peptide, 1148 aa]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 231 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|73949725|ref|XP_544339.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
           [Canis familiaris]
          Length = 725

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 543 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 602

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 603 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 646


>gi|270047502|ref|NP_598820.2| probable ATP-dependent RNA helicase DDX41 [Mus musculus]
 gi|74142777|dbj|BAE33914.1| unnamed protein product [Mus musculus]
          Length = 622

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 495 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 543

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 544 VLMDLKALLLEAKQKVPP 561


>gi|56420639|ref|YP_147957.1| DNA/RNA helicase [Geobacillus kaustophilus HTA426]
 gi|56380481|dbj|BAD76389.1| DNA/RNA helicase [Geobacillus kaustophilus HTA426]
          Length = 815

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 11/105 (10%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+   + R A+ L+EY      R   +HS+   + R + I  L   + D +  ++L  
Sbjct: 451 RTLVFCSSIRQADFLSEYFQRHGCRTISLHSKQTAISRKQAIAMLERRELDAIFTVDLFN 510

Query: 644 EGLDIPECGLVAILDADKEGFLR---SKTSLIQTIGRAARNVNSK 685
           EG+DIP          D   F+R   S T  IQ +GR  R    K
Sbjct: 511 EGVDIP--------SVDTLLFVRPTESLTVFIQQVGRGLRLYKGK 547


>gi|33603573|ref|NP_891133.1| putative primosomal protein [Bordetella bronchiseptica RB50]
 gi|33577698|emb|CAE34963.1| putative primosomal protein [Bordetella bronchiseptica RB50]
          Length = 700

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R+ E L E+  +  I      S  +      +   +  G+ D++VG  ++ +G D   
Sbjct: 458 TQRIEEQLAEWFPQARIARIDADSTRRKGSAQALFAAVHAGEVDIMVGTQMVAKGHDFAR 517

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAARNVNSKVIL 688
            GLV +L+AD   F        R    L+Q  GRA R+     +L
Sbjct: 518 LGLVGVLNADSMLFAHDFRAPERLFAQLMQVAGRAGRHAAGAQVL 562


>gi|269955581|ref|YP_003325370.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304262|gb|ACZ29812.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 605

 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 38/72 (52%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A+   R ++   TKR A  +++ L +R      +H ++    R + +R LR GK DVL
Sbjct: 315 LQAEGRGRSIVFARTKRTAAKVSDELRDRGFAAGAIHGDLGQGAREQALRALRHGKIDVL 374

Query: 637 VGINLLREGLDI 648
           V  ++   G+D+
Sbjct: 375 VATDVAARGIDV 386


>gi|254508504|ref|ZP_05120622.1| transcription-repair coupling factor [Vibrio parahaemolyticus 16]
 gi|219548529|gb|EED25536.1| transcription-repair coupling factor [Vibrio parahaemolyticus 16]
          Length = 1153

 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 121/295 (41%), Gaps = 38/295 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+     +A++ +      ++  P+   A +L  E + F   +     V+ +  ++  
Sbjct: 24  LQGASLALAIAELADQHTSHTLLAVPDPQTALKLLQEIEQFTDQD-----VALFPDWETL 78

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMI 294
            Y    D +   +  I+++I R+    T S       I +  VS +    S   Y  Q  
Sbjct: 79  PY----DNFSPHQEIISDRIARLYQLPTLS-----RGITIVPVSTLLQRQSPRDYLMQHT 129

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K+GD    ++L   L K  Y+  D     G +   G  +++FP    D  +R+  F 
Sbjct: 130 LMVKVGDLFSLEKLRMQLEKSGYRNVDQVFGPGEYASRGSILDLFPMGSND-PFRIDFFD 188

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P   + I +V+ I++     +    PT  +A++  +   + R        
Sbjct: 189 DEIDTIRTFDPENQRSIDDVQEIRLLPAHEF----PTTESAIEDFRIRWRQRF------- 237

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
              EA+R  + +     M  + G+  +   Y + L      E   TLF+YI +DS
Sbjct: 238 ---EARREPESVY----MQVSKGTWPAGIEYWQPLFF----EQTETLFDYIADDS 281


>gi|213051995|ref|ZP_03344873.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 718

 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 124/303 (40%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCQHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E   +
Sbjct: 130 --------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQ-PY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + +    
Sbjct: 181 RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWR-DTF 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E++++     A+ + Q+++         G+  +   Y + L      EP P LF Y P +
Sbjct: 236 EVKRD-----AEHIYQQVS--------KGTLPAGIEYWQPLFF---SEPLPPLFSYFPAN 279

Query: 469 SLL 471
           +L+
Sbjct: 280 TLV 282


>gi|7573310|emb|CAB87628.1| DRH1 DEAD box protein-like [Arabidopsis thaliana]
          Length = 713

 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           + G +I++   TKRM + L   L  R      +H +    ER +++   R G+  VLV  
Sbjct: 472 EPGSKIIIFCSTKRMCDQLARNL-TRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVAT 530

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++   GLD+ +  +V   D     F       +  IGR  R
Sbjct: 531 DVAARGLDVKDIRVVVNYD-----FPNGVEDYVHRIGRTGR 566


>gi|29375434|ref|NP_814588.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis V583]
 gi|227520091|ref|ZP_03950140.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX0104]
 gi|227554958|ref|ZP_03985005.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           HH22]
 gi|229546689|ref|ZP_04435414.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX1322]
 gi|229548784|ref|ZP_04437509.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           ATCC 29200]
 gi|293383725|ref|ZP_06629632.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|293388799|ref|ZP_06633292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|307267925|ref|ZP_07549313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|307271845|ref|ZP_07553113.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|307275145|ref|ZP_07556297.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|307286655|ref|ZP_07566741.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|307290778|ref|ZP_07570673.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|312901614|ref|ZP_07760885.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|312904406|ref|ZP_07763566.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|312907060|ref|ZP_07766056.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|312952884|ref|ZP_07771745.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|312978684|ref|ZP_07790411.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|29342894|gb|AAO80658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis V583]
 gi|227072435|gb|EEI10398.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX0104]
 gi|227175901|gb|EEI56873.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           HH22]
 gi|229306092|gb|EEN72088.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           ATCC 29200]
 gi|229308195|gb|EEN74182.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX1322]
 gi|291078801|gb|EFE16165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|291081956|gb|EFE18919.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|306498159|gb|EFM67681.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|306502133|gb|EFM71417.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|306508173|gb|EFM77291.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|306511351|gb|EFM80353.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|306515566|gb|EFM84093.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|310627045|gb|EFQ10328.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|310629187|gb|EFQ12470.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|310632233|gb|EFQ15516.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|311288391|gb|EFQ66947.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|311291302|gb|EFQ69858.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|315027034|gb|EFT38966.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
 gi|315029211|gb|EFT41143.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
 gi|315032370|gb|EFT44302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
 gi|315034370|gb|EFT46302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
 gi|315145185|gb|EFT89201.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
 gi|315148006|gb|EFT92022.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
 gi|315149607|gb|EFT93623.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
 gi|315153133|gb|EFT97149.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
 gi|315155152|gb|EFT99168.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
 gi|315158764|gb|EFU02781.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
 gi|315163093|gb|EFU07110.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
 gi|315165079|gb|EFU09096.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
 gi|315167890|gb|EFU11907.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
 gi|315171750|gb|EFU15767.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
 gi|315174909|gb|EFU18926.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
 gi|315574115|gb|EFU86306.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
 gi|315577243|gb|EFU89434.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
 gi|315581764|gb|EFU93955.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
 gi|327534429|gb|AEA93263.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF]
          Length = 536

 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  +   +H ++   +R+ ++R  + G  D+LV  ++   GLDI  
Sbjct: 269 TKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDI-- 326

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 327 SGVTHVYNYD---IPQDPESYVHRIGRTGR 353


>gi|21071032|ref|NP_057306.2| probable ATP-dependent RNA helicase DDX41 [Homo sapiens]
 gi|55625482|ref|XP_518135.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform 3 [Pan
           troglodytes]
 gi|20532370|sp|Q9UJV9|DDX41_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX41; AltName:
           Full=DEAD box protein 41; AltName: Full=DEAD box protein
           abstrakt homolog
 gi|15930065|gb|AAH15476.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Homo sapiens]
 gi|119605387|gb|EAW84981.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_d [Homo
           sapiens]
 gi|189067937|dbj|BAG37875.1| unnamed protein product [Homo sapiens]
 gi|306921323|dbj|BAJ17741.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [synthetic construct]
 gi|325463517|gb|ADZ15529.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [synthetic construct]
          Length = 622

 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 495 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 543

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 544 VLMDLKALLLEAKQKVPP 561


>gi|83745783|ref|ZP_00942840.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
 gi|207743697|ref|YP_002260089.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
 gi|83727473|gb|EAP74594.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
 gi|206595096|emb|CAQ62023.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
          Length = 631

 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I+ T  TKR A+ L E L E       +H ++    R   +  LR G   +LV  ++   
Sbjct: 329 IVFTA-TKRDADSLAERLTETGFAAGALHGDMHQGARNRTLTALRRGHLRILVATDVAAR 387

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           G+D+P+   V   D  K+         +  IGR  R   S + +
Sbjct: 388 GIDVPDITHVVNFDLPKQA-----EDYVHRIGRTGRAGRSGIAI 426


>gi|327265659|ref|XP_003217625.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Anolis
           carolinensis]
          Length = 672

 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 485 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKDVLVATDVASK 544

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 545 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 593

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 594 VLMDLKALLLEAKQKVPP 611


>gi|323962713|gb|EGB58291.1| transcription-repair coupling protein [Escherichia coli H489]
 gi|323973296|gb|EGB68485.1| transcription-repair coupling protein [Escherichia coli TA007]
 gi|332342663|gb|AEE55997.1| transcription-repair coupling factor protein [Escherichia coli
           UMNK88]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|291395375|ref|XP_002714088.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3
           [Oryctolagus cuniculus]
          Length = 706

 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 524 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 583

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 584 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 627


>gi|293433403|ref|ZP_06661831.1| transcription-repair coupling factor [Escherichia coli B088]
 gi|331667514|ref|ZP_08368378.1| transcription-repair coupling factor [Escherichia coli TA271]
 gi|291324222|gb|EFE63644.1| transcription-repair coupling factor [Escherichia coli B088]
 gi|320201009|gb|EFW75593.1| Transcription-repair coupling factor [Escherichia coli EC4100B]
 gi|331065099|gb|EGI36994.1| transcription-repair coupling factor [Escherichia coli TA271]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.7 bits (86), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|289617128|emb|CBI56196.1| putative SGS1 protein [Sordaria macrospora]
          Length = 2276

 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 582  GLRILLTVLTKRMAEDLTEYLYERN-IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            G   ++  L+++ AE++ + L E++ IR ++ H+ + T E+I++  D + G   V+V   
Sbjct: 1442 GQTGIIYTLSRKSAENIAKNLEEKHGIRAKHYHASITTEEKIKVQHDWQAGDVKVVVATI 1501

Query: 641  LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
                G+D P+   V       +   +S     Q  GRA R+
Sbjct: 1502 AFGMGIDKPDVRFVI-----HQHIPKSLEGYYQETGRAGRD 1537


>gi|251797726|ref|YP_003012457.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. JDR-2]
 gi|247545352|gb|ACT02371.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. JDR-2]
          Length = 684

 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +++V  +H  +   E+ E++R     +  +LV   ++  G+D+P   L+ I+DA++ G  
Sbjct: 503 DLKVGLLHGRLSASEKDEVMRGFGANETQLLVATTVVEVGVDVPNATLIIIMDAERFGL- 561

Query: 666 RSKTSLIQTIGRAARNVN-SKVILYAD 691
              + L Q  GR  R  + S  +L AD
Sbjct: 562 ---SQLHQLRGRVGRGAHQSFCVLVAD 585


>gi|149732732|ref|XP_001496163.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
           isoform 1 [Equus caballus]
          Length = 725

 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 543 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 602

Query: 644 EGLDI 648
            GLDI
Sbjct: 603 RGLDI 607


>gi|129277522|ref|NP_001076071.1| probable ATP-dependent RNA helicase DDX41 [Bos taurus]
 gi|126717403|gb|AAI33466.1| DDX41 protein [Bos taurus]
 gi|296485512|gb|DAA27627.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Bos taurus]
          Length = 622

 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 495 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 543

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 544 VLMDLKALLLEAKQKVPP 561


>gi|194439730|ref|ZP_03071799.1| transcription-repair coupling factor [Escherichia coli 101-1]
 gi|194421349|gb|EDX37367.1| transcription-repair coupling factor [Escherichia coli 101-1]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             + I  AD  G       L Q  GR  R+ +     YA  +T   +    +T +R E
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRSHHQA---YAWLLTPHPKAMTTDTQKRLE 931


>gi|157160641|ref|YP_001457959.1| transcription-repair coupling factor [Escherichia coli HS]
 gi|312971250|ref|ZP_07785428.1| transcription-repair coupling factor [Escherichia coli 1827-70]
 gi|157066321|gb|ABV05576.1| transcription-repair coupling factor [Escherichia coli HS]
 gi|310336452|gb|EFQ01638.1| transcription-repair coupling factor [Escherichia coli 1827-70]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|332525439|ref|ZP_08401598.1| DEAD/DEAH box helicase-like protein [Rubrivivax benzoatilyticus
           JA2]
 gi|332108707|gb|EGJ09931.1| DEAD/DEAH box helicase-like protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 415

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+ V T+  +E +   L    I    +H E+    R  ++ +L  G+  V++  +L  
Sbjct: 250 RVLVFVATRHASEMVAAKLQRAGIAAAALHGELSQGARARVLAELAHGRLRVVLATDLAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GL IP   L A+++ D     RS       IGR AR
Sbjct: 310 RGLHIP--ALAAVVNYD---LPRSAADYTHRIGRTAR 341


>gi|330977359|gb|EGH77309.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 691

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 590 LTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           LT + AE   E L     ++RV  +H  +K  E+  I+ + + G   +LV   ++  G+D
Sbjct: 497 LTCKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVD 556

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           +P   L+ I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 557 VPNSSLMIIENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 602


>gi|313632756|gb|EFR99724.1| primosomal protein N' [Listeria seeligeri FSL N1-067]
          Length = 797

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     +++R  R  + D+L+G  ++ +GLD P
Sbjct: 558 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLRSFRNHEADILLGTQMIAKGLDFP 616

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 617 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 655


>gi|270159982|ref|ZP_06188638.1| transcription-repair coupling factor [Legionella longbeachae
           D-4968]
 gi|289165275|ref|YP_003455413.1| Transcription-repair coupling factor [Legionella longbeachae
           NSW150]
 gi|269988321|gb|EEZ94576.1| transcription-repair coupling factor [Legionella longbeachae
           D-4968]
 gi|288858448|emb|CBJ12326.1| Transcription-repair coupling factor [Legionella longbeachae
           NSW150]
          Length = 1146

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R+ EDL   + E  IR  +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 825 ERICEDLQSLVPEAKIRSAHGQMRERELERV--MSDFYHHRFNVLVCTTIIETGIDIPTA 882

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 883 NTIIIDRADKFGL----AQLHQLRGRVGRS 908


>gi|169831746|ref|YP_001717728.1| primosomal protein N' [Candidatus Desulforudis audaxviator MP104C]
 gi|169638590|gb|ACA60096.1| primosomal protein N' [Candidatus Desulforudis audaxviator MP104C]
          Length = 735

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 7/106 (6%)

Query: 116 LLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLL 174
           LL+ G + T  RS + N +    T  ++      +G+Q  A+  + KG  + R++  LL 
Sbjct: 169 LLEKGVLTTSRRSVARNPYPVSQTITELP---RLTGEQLRALEAIEKGFQAQRKEFFLLH 225

Query: 175 GVTGSGKT--FTMAKVIEAMQ-RPAIVMAPNKILAAQLYSEFKNFF 217
           GVTGSGKT  +  A     +Q R  +V+ P   LA QL  +FK  F
Sbjct: 226 GVTGSGKTEIYLRAAAGALVQGRQVLVLVPEITLATQLIHQFKARF 271


>gi|120402790|ref|YP_952619.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955608|gb|ABM12613.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii
           PYR-1]
          Length = 494

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ + + L ER  +V  +H ++    R + ++  R G+ DVLV  ++   G+DI
Sbjct: 270 TKRTAQKVADELGERGFKVGAVHGDLGQAAREKALKSFRTGEVDVLVATDVAARGIDI 327


>gi|6118555|gb|AAF04150.1|AF195417_1 DEAD-box protein abstrakt [Homo sapiens]
          Length = 621

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 434 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 493

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 494 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 542

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 543 VLMDLKALLLEAKQKVPP 560


>gi|58040739|ref|YP_192703.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58003153|gb|AAW62047.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 393

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   + L + L   N+RV  +H +     R + +   R G+  VLV  ++   GLDIP+
Sbjct: 269 TKNTVDALAKTLRRHNLRVETLHGDRTQGARNKALDLFRQGRIPVLVTTDIASRGLDIPD 328

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV  +D  +     +  + +  IGR AR
Sbjct: 329 VDLVINMDMPE-----TPEAYVHRIGRTAR 353


>gi|16125686|ref|NP_420250.1| ATP-dependent DNA helicase RecG [Caulobacter crescentus CB15]
 gi|221234441|ref|YP_002516877.1| ATP-dependent DNA helicase recG [Caulobacter crescentus NA1000]
 gi|13422802|gb|AAK23418.1| ATP-dependent DNA helicase RecG [Caulobacter crescentus CB15]
 gi|220963613|gb|ACL94969.1| ATP-dependent DNA helicase recG [Caulobacter crescentus NA1000]
          Length = 698

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 20/191 (10%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R AED    L      V  +H ++   E+  +++    G+ +VLV   ++  G+++P   
Sbjct: 500 RAAEDRAADLARHLPGVGLVHGQMPPAEKDAVMQRFVDGEVNVLVATTVVEVGVNVPNAS 559

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNV--NSKVILYADTITKSIQLAIDETTRRREK 710
           ++ I  AD+ G       L Q  GR  R    ++ V+LY   +++  Q  +D   RR + 
Sbjct: 560 IMVIEHADRFGL----AQLHQLRGRVGRGTRESACVLLYDPPLSEVAQQRLD-ILRRSDD 614

Query: 711 QLEHNKK-----HNINPQSVKEK---IMEVIDPI----LLEDAATTNISIDAQQLSLSKK 758
             E  +K        +P  +K+       + DP+    L+  AA     I A+ L+L+  
Sbjct: 615 GFEIAEKDLELRGGGDPLGLKQSGFPAYRLADPVAHRDLIAVAADDARLILARDLALTSP 674

Query: 759 KGKAHLKSLRK 769
           +G+A L++L++
Sbjct: 675 RGQA-LRTLQE 684


>gi|7022398|dbj|BAA91585.1| unnamed protein product [Homo sapiens]
          Length = 622

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 495 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 543

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 544 VLMDLKALLLEAKQKVPP 561


>gi|22297958|ref|NP_681205.1| primosome assembly protein PriA [Thermosynechococcus elongatus
           BP-1]
 gi|22294136|dbj|BAC07967.1| primosomal replication factor Y [Thermosynechococcus elongatus
           BP-1]
          Length = 850

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 8/74 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +++     G+ DV+VG  +L +G+D+P+  LV IL AD    L       R+   L Q  
Sbjct: 642 QLLTQFAAGEADVMVGTQMLTKGIDLPQVALVGILAADSLLHLPDYQAAERTFQILTQVA 701

Query: 676 GRAARNVN-SKVIL 688
           GR+ R  +  +VIL
Sbjct: 702 GRSGRGAHPGQVIL 715


>gi|46124927|ref|XP_387017.1| hypothetical protein FG06841.1 [Gibberella zeae PH-1]
          Length = 249

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH ++   +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 124 TRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQ 183

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 184 VSLVINYDLPANRENYI 200


>gi|323453007|gb|EGB08879.1| hypothetical protein AURANDRAFT_70153 [Aureococcus anophagefferens]
          Length = 306

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ + +++  V  MH ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 181 TRRKVDWLTDGMTQKDFTVSAMHGDMDQKERDIIMREFRSGSSRVLITTDLLARGIDVQQ 240

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        ++ + I  IGR+ R
Sbjct: 241 VSLVINYDLPT-----NRENYIHRIGRSGR 265


>gi|300114141|ref|YP_003760716.1| transcription-repair coupling factor [Nitrosococcus watsonii C-113]
 gi|299540078|gb|ADJ28395.1| transcription-repair coupling factor [Nitrosococcus watsonii C-113]
          Length = 1158

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 91/202 (45%), Gaps = 12/202 (5%)

Query: 180 GKTFTMAKVIEAMQRPA--IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G +F +     A   P   +++ P+ I A +L  E + F+  N  +  + ++  ++   Y
Sbjct: 29  GSSFGLVLAASAYHHPGPILIITPDTITANRLEDELR-FYRSNQEDSPILHFPDWETLPY 87

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
               DT+   +  ++E++  + +   R  LER   IV  S + +  +   E      + L
Sbjct: 88  ----DTFSPHQDILSERLATL-YQLPR--LERGILIVPVS-TLMQRLAPQEYLETHSLLL 139

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
            IGD +  +     L K  Y+     +  G F + G  I++FP     V +R+ +  +++
Sbjct: 140 AIGDRLHLENWRKQLEKGGYRCVSQVMEHGEFTIRGSLIDLFPMG-STVPYRIDLLDDEV 198

Query: 358 EEISEFYPLTGQKIRNVETIKI 379
           + +  F P T + +++V  I++
Sbjct: 199 DSLRSFDPETQRSLQSVAQIQL 220


>gi|296193469|ref|XP_002744529.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Callithrix
           jacchus]
          Length = 622

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 495 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 543

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 544 VLMDLKALLLEAKQKVPP 561


>gi|295828374|gb|ADG37856.1| AT1G12770-like protein [Capsella grandiflora]
          Length = 190

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  +D+   L  R +    MH ++  LER  +++  + G+  VLV   L   GLD+ EC 
Sbjct: 87  RQLKDVVYKLEARGMNSAEMHGDLGKLERSTVLKKFKKGEIKVLVTNELSARGLDVAECD 146

Query: 653 LVAILD 658
           LV  L+
Sbjct: 147 LVVNLE 152


>gi|294673582|ref|YP_003574198.1| DEAD/DEAH box helicase [Prevotella ruminicola 23]
 gi|294472821|gb|ADE82210.1| ATP-dependent helicase, DEAD/DEAH box family [Prevotella ruminicola
           23]
          Length = 446

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 14/115 (12%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           ++D++ + +L      R+++    K   +++T  L   +I    MHS++   ER E +  
Sbjct: 236 IQDIFKKGDLQ-----RVIIFSGKKERVKEVTRKLKSMHINCDQMHSDLSQAERDEAMYR 290

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            + G+ DVLV  +++  G+DI +  LV   D  +D E +       +  IGR AR
Sbjct: 291 FKAGQTDVLVATDIVARGIDIDDIRLVINYDVPSDSEDY-------VHRIGRTAR 338


>gi|293376735|ref|ZP_06622957.1| ATP-dependent RNA helicase DbpA [Turicibacter sanguinis PC909]
 gi|325845681|ref|ZP_08168964.1| ATP-dependent RNA helicase DbpA [Turicibacter sp. HGF1]
 gi|292644601|gb|EFF62689.1| ATP-dependent RNA helicase DbpA [Turicibacter sanguinis PC909]
 gi|325488282|gb|EGC90708.1| ATP-dependent RNA helicase DbpA [Turicibacter sp. HGF1]
          Length = 479

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   + L   L ++   +  +H  +   ER E +++ ++G+F  LV  ++  
Sbjct: 242 RCMIFCSTKEAVDALYRNLSQKGYPIERLHGGLDQKERFETMKNFKIGRFAYLVSTDVAA 301

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA 690
            G+D+     V   D   E     K S +  IGRA R     K I +A
Sbjct: 302 RGIDVSGVSHVINYDLPPE-----KDSFVHRIGRAGRAGQKGKAITFA 344


>gi|30584005|gb|AAP36251.1| Homo sapiens DEAD-box protein abstrakt [synthetic construct]
 gi|61369941|gb|AAX43416.1| DEAD box polypeptide 41 [synthetic construct]
 gi|61369946|gb|AAX43417.1| DEAD box polypeptide 41 [synthetic construct]
          Length = 623

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 495 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 543

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 544 VLMDLKALLLEAKQKVPP 561


>gi|330952140|gb|EGH52400.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae Cit 7]
          Length = 691

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 590 LTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           LT + AE   E L     ++RV  +H  +K  E+  I+ + + G   +LV   ++  G+D
Sbjct: 497 LTCKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVD 556

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           +P   L+ I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 557 VPNSSLMIIENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 602


>gi|323185763|gb|EFZ71124.1| transcription-repair coupling factor [Escherichia coli 1357]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|317121767|ref|YP_004101770.1| ATP-dependent DNA helicase RecG [Thermaerobacter marianensis DSM
           12885]
 gi|315591747|gb|ADU51043.1| ATP-dependent DNA helicase RecG [Thermaerobacter marianensis DSM
           12885]
          Length = 924

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 7/111 (6%)

Query: 599 TEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            E++  R   +RV  +H  +   E+  ++R       DVLV   ++  G+D+P   ++ I
Sbjct: 730 AEFVARRYPRLRVGILHGRMPGAEKERVMRAFERRALDVLVATTVIEVGVDVPNATVMII 789

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSIQLAIDETTR 706
             AD+ G       L Q  GR  R    S  IL AD  T   +L ++   R
Sbjct: 790 EGADRFGL----AQLHQLRGRVGRGSKESLCILVADPATAEGRLRLEALCR 836


>gi|330910930|gb|EGH39440.1| transcription-repair coupling factor [Escherichia coli AA86]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|302189228|ref|ZP_07265901.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. syringae
           642]
          Length = 691

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 590 LTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           LT + AE   E L     ++RV  +H  +K  E+  I+ + + G   +LV   ++  G+D
Sbjct: 497 LTCKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVD 556

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           +P   L+ I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 557 VPNSSLMIIENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 602


>gi|301785524|ref|XP_002928176.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like
           [Ailuropoda melanoleuca]
          Length = 622

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 495 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 543

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 544 VLMDLKALLLEAKQKVPP 561


>gi|294668966|ref|ZP_06734053.1| transcription-repair coupling factor [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309139|gb|EFE50382.1| transcription-repair coupling factor [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 325

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 87/208 (41%), Gaps = 17/208 (8%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  +   A +L + +  F PH+    F+  ++    E + P  D   E+ S++ +   
Sbjct: 37  VVLTQDAEQALRLQTAWLFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ--- 92

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            ++  A        D + V   + +  +  V   +     LK G +++   L S LV   
Sbjct: 93  -IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDAG 144

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  
Sbjct: 145 YNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVSE 203

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELK 404
           I++     +    PT + A K  +   +
Sbjct: 204 IRLLPAHEF----PTDSEAQKIFRSRFR 227


>gi|194433692|ref|ZP_03065968.1| transcription-repair coupling factor [Shigella dysenteriae 1012]
 gi|194418121|gb|EDX34214.1| transcription-repair coupling factor [Shigella dysenteriae 1012]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|169642132|gb|AAI60762.1| LOC100127243 protein [Xenopus laevis]
          Length = 638

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MHS+   +ER++I++ L  G++DV+V   +L  GLD+    LV   D        S    
Sbjct: 495 MHSDKSQMERMKILQGLLQGEYDVVVSTGVLGRGLDLVNVKLVVNFDMPP-----SMDEY 549

Query: 672 IQTIGRAAR 680
           +  IGRA R
Sbjct: 550 VHQIGRAGR 558


>gi|170682845|ref|YP_001744064.1| transcription-repair coupling factor [Escherichia coli SMS-3-5]
 gi|170520563|gb|ACB18741.1| transcription-repair coupling factor [Escherichia coli SMS-3-5]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 231 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|16800991|ref|NP_471259.1| ATP-dependent DNA helicase RecG [Listeria innocua Clip11262]
 gi|16414426|emb|CAC97155.1| lin1925 [Listeria innocua Clip11262]
          Length = 682

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++   ++ +I+RD    K D LV   ++  G+++P   ++ I DAD+ G       L
Sbjct: 507 MHGKLLPADKEQIMRDFNDKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGL----AQL 562

Query: 672 IQTIGRAARNV-NSKVILYADTITK 695
            Q  GR  R    S  IL AD  T+
Sbjct: 563 HQLRGRVGRGAEQSYCILIADPKTE 587


>gi|110634054|ref|YP_674262.1| transcription-repair coupling factor [Mesorhizobium sp. BNC1]
 gi|110285038|gb|ABG63097.1| transcription-repair coupling factor [Chelativorans sp. BNC1]
          Length = 1167

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 10/119 (8%)

Query: 597 DLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           ++ E+L E+   ++V   H ++   E  +I+     GK+DVL+   ++  GLDIP    +
Sbjct: 843 EVKEFLAEQVPELKVATAHGQIAAGELDDIMNAFYDGKYDVLLSTTIVESGLDIPTANTL 902

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
            +  AD  G       L Q  GR  R   SKV  YA   T      +  T  RR K L+
Sbjct: 903 IVHRADMFGL----AQLYQLRGRVGR---SKVRAYA-LFTLPANRTLTPTAERRLKVLQ 953


>gi|66475700|ref|XP_627666.1| Rok1p, eIF4A-1-family RNA SFII helicase [Cryptosporidium parvum
           Iowa II]
 gi|32398898|emb|CAD98363.1| dead box RNA helicase, possible [Cryptosporidium parvum]
 gi|46229099|gb|EAK89948.1| Rok1p, eIF4A-1-family RNA SFII helicase [Cryptosporidium parvum
           Iowa II]
 gi|323508863|dbj|BAJ77324.1| cgd6_3210 [Cryptosporidium parvum]
          Length = 480

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 10/105 (9%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER----NIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +QG +I+L  L    ++D  + L+++    N+ V  +HS++  ++R  II+  R GK  +
Sbjct: 328 KQG-KIMLPTLVFTNSKDDAQRLFKKLMYDNLIVEAIHSDMPKVKRDNIIQRFRTGKIWI 386

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           L+  +L+  G+D      V   D     F  S ++ I  +GR  R
Sbjct: 387 LICTDLMARGVDFKNVSCVVNYD-----FPHSPSNYIHRVGRCGR 426


>gi|332706186|ref|ZP_08426255.1| DNA / RNA helicase, superfamily II [Lyngbya majuscula 3L]
 gi|332355023|gb|EGJ34494.1| DNA / RNA helicase, superfamily II [Lyngbya majuscula 3L]
          Length = 508

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 13/116 (11%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDL--------TEYLYERNIRVRYMHSEVKTLERIEII 625
           EI L     LRILL +L +   E +        T Y   + + +  +  +    ER +I+
Sbjct: 315 EIALGTDGKLRILLDLLAQHYPEKMLIFTNGNATLYRISQELLIPAITHQTPVKERHDIL 374

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           +  R G++  L   ++L EG+D+P+  +  IL         S    IQ +GR  R 
Sbjct: 375 KRFREGEYRCLAASHVLNEGVDVPDARVAIILSGTG-----SSREYIQRLGRVLRK 425


>gi|328477415|gb|EGF47542.1| phage helicase [Lactobacillus rhamnosus MTCC 5462]
          Length = 509

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 10/83 (12%)

Query: 605 RNIRVRYMHSEVKT--LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           R+  +  +H++ KT   +R +I+RD + G   VL  ++L+ EG ++P+ G++ +      
Sbjct: 361 RSAGISAVHADAKTPKAQREKIMRDFKAGDITVLSNVDLISEGFNVPDVGVIIM------ 414

Query: 663 GFLRSKTSLIQTIGRAARNVNSK 685
             LR   SL+  I ++ R +  K
Sbjct: 415 --LRPTASLVLDIQQSMRGMRYK 435


>gi|312898631|ref|ZP_07758021.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
 gi|310620550|gb|EFQ04120.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
          Length = 522

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TKR  ++L+E L +R      +H ++   +R  +IR  R    D+LV  ++   G
Sbjct: 251 IIFVRTKRRVDELSEGLKKRGYSAEGIHGDLTQAKRDSVIRQFREKTIDILVATDVAARG 310

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDI   G+  + + D     +   S +  +GR  R
Sbjct: 311 LDI--SGVTHVYNYD---LPQDPESYVHRVGRTGR 340


>gi|307105760|gb|EFN54008.1| hypothetical protein CHLNCDRAFT_31911 [Chlorella variabilis]
          Length = 556

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 10/122 (8%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V I+  R  V D+   +    ++GL  L+ V TK+ A+ L ++L    +    +H +   
Sbjct: 300 VPIQDKRQMVLDLLQTL----EKGL-TLIFVETKKGADALEDFLCRNGLPATSIHGDRSQ 354

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER   +R  R G+  VLV  ++   GLDIP    V   D   +         +  IGR 
Sbjct: 355 AEREAALRSFRTGRTPVLVATDVAARGLDIPHVTHVINFDLPSD-----IDDYVHRIGRT 409

Query: 679 AR 680
            R
Sbjct: 410 GR 411


>gi|304385240|ref|ZP_07367585.1| ATP-dependent RNA helicase DbpA [Pediococcus acidilactici DSM
           20284]
 gi|304328447|gb|EFL95668.1| ATP-dependent RNA helicase DbpA [Pediococcus acidilactici DSM
           20284]
          Length = 453

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK  A++LT YL  + + V  +H  +   ER  I++D+   ++  +V  +L   G+DI  
Sbjct: 252 TKERADELTNYLKSQGLPVAKIHGGIPPRERKRIMKDIHRLRYQYVVATDLAARGIDIEG 311

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAARN 681
             LV   D   D E F       I  +GR  RN
Sbjct: 312 VSLVINDDIPTDLEFF-------IHRVGRTGRN 337


>gi|254302222|ref|ZP_04969580.1| DEAD/DEAH box family helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322414|gb|EDK87664.1| DEAD/DEAH box family helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 942

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 15/138 (10%)

Query: 555 VDPPVEIR--SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED--LTEYLYERNIRVR 610
           +D    I+  ++ T+V+ + ++    +  G R+   +   ++ E   L E   E+ I+  
Sbjct: 404 IDEKTSIKKLTSDTRVKHILEKSKYYSYSGERLSCLIFVSKVEEAKILVEKFLEQGIKAI 463

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            + SE    ER E I+ L  G+ + ++ +++  EG+DIP C    IL       LR  TS
Sbjct: 464 ALSSENSDNEREEAIKKLEQGEIEYIISVDIFNEGVDIP-CVNQVIL-------LRPTTS 515

Query: 671 ---LIQTIGRAARNVNSK 685
               IQ +GR  R   +K
Sbjct: 516 AIVYIQQLGRGLRKYKNK 533


>gi|118578051|sp|Q0U8V9|DBP8_PHANO RecName: Full=ATP-dependent RNA helicase DBP8
          Length = 508

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 598 LTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           L EY+    + RV  +HS +K  +RI  +   R     +LV  ++   GLDIPE GLV  
Sbjct: 346 LLEYMLRMLDHRVTALHSGLKQQDRISNLARFRAQAARILVATDVAARGLDIPEVGLVVN 405

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR 680
            D       R     I  +GR AR
Sbjct: 406 FDVP-----RDPDDYIHRVGRTAR 424


>gi|6808044|emb|CAB70750.1| hypothetical protein [Homo sapiens]
          Length = 635

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 453 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAA 512

Query: 644 EGLDI 648
            GLDI
Sbjct: 513 RGLDI 517


>gi|79513425|ref|NP_196965.2| ATP binding / ATP-dependent helicase/ helicase/ nucleic acid
           binding / protein binding [Arabidopsis thaliana]
 gi|332004671|gb|AED92054.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana]
          Length = 712

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           + G +I++   TKRM + L   L  R      +H +    ER +++   R G+  VLV  
Sbjct: 472 EPGSKIIIFCSTKRMCDQLARNL-TRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVAT 530

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++   GLD+ +  +V   D     F       +  IGR  R
Sbjct: 531 DVAARGLDVKDIRVVVNYD-----FPNGVEDYVHRIGRTGR 566


>gi|73953218|ref|XP_536417.2| PREDICTED: similar to Probable ATP-dependent helicase DDX41
           (DEAD-box protein 41) (DEAD-box protein abstrakt
           homolog) isoform 1 [Canis familiaris]
          Length = 622

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 495 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 543

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 544 VLMDLKALLLEAKQKVPP 561


>gi|16129077|ref|NP_415632.1| transcription-repair coupling factor [Escherichia coli str. K-12
           substr. MG1655]
 gi|89107960|ref|AP_001740.1| transcription-repair coupling factor [Escherichia coli str. K-12
           substr. W3110]
 gi|170080765|ref|YP_001730085.1| transcription-repair coupling factor [Escherichia coli str. K-12
           substr. DH10B]
 gi|238900368|ref|YP_002926164.1| transcription-repair coupling factor [Escherichia coli BW2952]
 gi|256023188|ref|ZP_05437053.1| transcription-repair coupling factor [Escherichia sp. 4_1_40B]
 gi|307137749|ref|ZP_07497105.1| transcription-repair coupling factor [Escherichia coli H736]
 gi|2507063|sp|P30958|MFD_ECOLI RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|1651547|dbj|BAA35929.1| transcription-repair coupling factor [Escherichia coli str. K12
           substr. W3110]
 gi|1787357|gb|AAC74198.1| transcription-repair coupling factor [Escherichia coli str. K-12
           substr. MG1655]
 gi|169888600|gb|ACB02307.1| transcription-repair coupling factor [Escherichia coli str. K-12
           substr. DH10B]
 gi|238863683|gb|ACR65681.1| transcription-repair coupling factor [Escherichia coli BW2952]
 gi|309701385|emb|CBJ00686.1| transcription-repair coupling factor [Escherichia coli ETEC H10407]
 gi|323937854|gb|EGB34118.1| transcription-repair coupling protein [Escherichia coli E1520]
 gi|323942583|gb|EGB38750.1| transcription-repair coupling protein [Escherichia coli E482]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|220931855|ref|YP_002508763.1| ATP-dependent DNA helicase RecG [Halothermothrix orenii H 168]
 gi|219993165|gb|ACL69768.1| ATP-dependent DNA helicase RecG [Halothermothrix orenii H 168]
          Length = 683

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y +   V  +H ++   E+ +++ D R G  DVLV   ++  G+D+P   ++ I +AD+ 
Sbjct: 505 YLKGYNVGLLHGKLPPEEKKQVMEDFRQGVIDVLVSTTVVEVGVDVPNATIMIIENADRF 564

Query: 663 GFLRSKTSLIQTIGRAARN-VNSKVILYADTIT 694
           G       L Q  GR  R    S  IL  +  T
Sbjct: 565 GL----AQLHQLRGRVGRGKYQSYCILIGNPTT 593


>gi|188491808|ref|ZP_02999078.1| transcription-repair coupling factor [Escherichia coli 53638]
 gi|188487007|gb|EDU62110.1| transcription-repair coupling factor [Escherichia coli 53638]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282


>gi|297171094|gb|ADI22106.1| transcription-repair coupling factor (superfamily II helicase)
           [uncultured Planctomycetales bacterium HF0200_11L05]
          Length = 530

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 31/184 (16%)

Query: 197 IVMAPNKILAAQLYSEFK------NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
           I++  N +LA   Y E K      N FPH         YD++ P                
Sbjct: 26  IIITSNSLLAESTYQELKKKHLKVNLFPHTET----LPYDFFSP---------------- 65

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
            ++ I  +R      LL      ++ S+  +      + +      LK+  S+ +K+L+S
Sbjct: 66  -SKDIKNLRMQVLSGLLAGEIHTLIVSIHALMSPCPDKPHLLPFELLKVNTSINRKKLIS 124

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP---LT 367
            L    Y+R+DI    G F + G  I+I+ +   D   R+ +  + IE +  F P   +T
Sbjct: 125 GLQNSGYERKDIVNEIGEFALRGSIIDIYATGY-DEPIRIEINESKIESLRTFDPSSQIT 183

Query: 368 GQKI 371
            QKI
Sbjct: 184 RQKI 187


>gi|289646385|ref|ZP_06477728.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 691

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L+  L E  +RV  +H  +K  E+  I+ + + G   +LV   ++  G+D+P   L+ 
Sbjct: 507 EELSSALGE--VRVGLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLMI 564

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 565 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 602


>gi|256018630|ref|ZP_05432495.1| transcription-repair coupling factor [Shigella sp. D9]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|163748921|ref|ZP_02156172.1| ATP-dependent DNA helicase RecQ [Shewanella benthica KT99]
 gi|161331297|gb|EDQ02185.1| ATP-dependent DNA helicase RecQ [Shewanella benthica KT99]
          Length = 654

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 27/216 (12%)

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF-EEWNCLRPTTIV 527
           SLL VDE+H  I +    +R D+           +LP        R+ +E N  +   + 
Sbjct: 138 SLLVVDEAHC-ISEWGHNFRPDY----------LKLP--------RYRQELNIPQTLLLT 178

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN--LAAQQGLRI 585
            +ATP   E    +  I ++ +  TG     + +     +  D  D +   L  +QGL  
Sbjct: 179 ATATPKVIEDMGDKFGIAKENVSLTGFYRANLHLAVQGVKTLDKLDTLCHWLQPRQGLSG 238

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V  ++ AE + E+L  RNI     H+ + +  R +I  D   G+  ++V       G
Sbjct: 239 IIYVTLQKTAEQVAEHLSSRNIPAIAYHAGMNSDVRSKIQDDFMSGRQQLIVATIAFGMG 298

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           +D  +   V   D  K     S  +  Q IGRA R+
Sbjct: 299 IDKSDIRYVVHYDLPK-----SVENYAQEIGRAGRD 329


>gi|157422943|gb|AAI53508.1| Eif4a1b protein [Danio rerio]
          Length = 429

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   +R  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 304 TRRKVDWLTEKMHARDFTVSALHGDMDQKDRDLIMREFRSGSSRVLITTDLLARGIDVQQ 363

Query: 651 CGLV 654
             LV
Sbjct: 364 VSLV 367


>gi|156934399|ref|YP_001438315.1| transcription-repair coupling factor [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532653|gb|ABU77479.1| hypothetical protein ESA_02230 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 60/303 (19%), Positives = 122/303 (40%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACAVEVAEMAERHAGPLVLIAPDMQTALRLHDEIQQFTESLVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPGMQRGVLILPVNTLMQR-----VCPHSFLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   ++ G  + +  L + L +  Y+  D  +  G +   G  ++++P   E   +
Sbjct: 130 --------MQKGQQLSRDTLRAQLDQAGYRHVDQVMAHGEYATRGALLDLYPMGSEQ-PY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + + R  
Sbjct: 181 RIDFFDDEIDSLRLFDVDTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRDRF- 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
                    E +R  + I   +    + G+  +   Y + L      EP P LF Y P++
Sbjct: 236 ---------EVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLFSYFPKN 279

Query: 469 SLL 471
           +L+
Sbjct: 280 TLV 282


>gi|149183244|ref|ZP_01861688.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
 gi|148849040|gb|EDL63246.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
          Length = 470

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R      +H ++   +R+ ++R  + G+ DVLV  ++   GLDI  
Sbjct: 230 TKRRVDELARALTLRGYSAEGIHGDLSQAKRMTVLRQFKEGRIDVLVATDVAARGLDI-- 287

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 288 SGVTHVYNFD---IPQDPESYVHRIGRTGR 314


>gi|118471657|ref|YP_889663.1| transcription-repair coupling factor [Mycobacterium smegmatis str.
           MC2 155]
 gi|118172944|gb|ABK73840.1| transcription-repair coupling factor [Mycobacterium smegmatis str.
           MC2 155]
          Length = 1215

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           V L +G  +E +++++ LV   Y R D+   RG F V G  +++FP   E    RV  +G
Sbjct: 154 VTLSVGAEMEFEDVVARLVDLSYTRVDMVGKRGEFAVRGGILDVFPPTAEHPV-RVEFWG 212

Query: 355 NDIEEISEF 363
           ++I E+  F
Sbjct: 213 DEISEMRAF 221


>gi|281342094|gb|EFB17678.1| hypothetical protein PANDA_018093 [Ailuropoda melanoleuca]
          Length = 613

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 426 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 485

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 486 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 534

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 535 VLMDLKALLLEAKQKVPP 552


>gi|225432126|ref|XP_002274485.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1864

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I  + ++G ++++   TK++ + L   +  RN     +H +   +ER  ++   R GK
Sbjct: 734 EQILRSQERGSKVIIFCSTKKLCDQLARSI-GRNFGAAVIHGDKSQVERDWVLNQFRSGK 792

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +LV  ++   GLDI +  +V   D     F       +  IGR  R
Sbjct: 793 SPILVATDVAARGLDIKDIRVVINYD-----FPTGIEDYVHRIGRTGR 835


>gi|220905823|ref|YP_002481134.1| excinuclease ABC subunit C [Cyanothece sp. PCC 7425]
 gi|254764930|sp|B8HSX6|UVRC_CYAP4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|219862434|gb|ACL42773.1| excinuclease ABC, C subunit [Cyanothece sp. PCC 7425]
          Length = 624

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 25/32 (78%)

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + +L  QM  AA+NLNFE+AARIRD+I  LK+
Sbjct: 217 IDTLTPQMEAAAENLNFEQAARIRDQINGLKT 248


>gi|126291595|ref|XP_001381058.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 649

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 462 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKDVLVATDVASK 521

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 522 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 570

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 571 VLMDLKALLLEAKQKVPP 588


>gi|121638855|ref|YP_979079.1| ATP-dependent DNA helicase RecG [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224991347|ref|YP_002646036.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|121494503|emb|CAL72984.1| Probable atp-dependent dna helicase recG [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224774462|dbj|BAH27268.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
          Length = 737

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           +R+  MH  +   ++   +   R G+ DVLV   ++  G+D+P   ++ ++DAD+ G   
Sbjct: 558 LRLALMHGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGI-- 615

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTI 693
             + L Q  GR  R  +  V L A  +
Sbjct: 616 --SQLHQLRGRIGRGEHPSVCLLASWV 640


>gi|74311675|ref|YP_310094.1| transcription-repair coupling factor [Shigella sonnei Ss046]
 gi|73855152|gb|AAZ87859.1| transcription-repair coupling factor [Shigella sonnei Ss046]
 gi|323165624|gb|EFZ51411.1| transcription-repair coupling factor [Shigella sonnei 53G]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|66043471|ref|YP_233312.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. syringae
           B728a]
 gi|289672854|ref|ZP_06493744.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. syringae
           FF5]
 gi|63254178|gb|AAY35274.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. syringae
           B728a]
          Length = 691

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 590 LTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           LT + AE   E L     ++RV  +H  +K  E+  I+ + + G   +LV   ++  G+D
Sbjct: 497 LTCKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVD 556

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           +P   L+ I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 557 VPNSSLMIIENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 602


>gi|15610110|ref|NP_217489.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis H37Rv]
 gi|15842526|ref|NP_337563.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis
           CDC1551]
 gi|31794150|ref|NP_856643.1| ATP-dependent DNA helicase RecG [Mycobacterium bovis AF2122/97]
 gi|148662822|ref|YP_001284345.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis H37Ra]
 gi|148824163|ref|YP_001288917.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis F11]
 gi|215404949|ref|ZP_03417130.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           02_1987]
 gi|215412817|ref|ZP_03421529.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           94_M4241A]
 gi|215428424|ref|ZP_03426343.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T92]
 gi|215431923|ref|ZP_03429842.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis EAS054]
 gi|215447241|ref|ZP_03433993.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T85]
 gi|253797935|ref|YP_003030936.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis KZN
           1435]
 gi|254233059|ref|ZP_04926386.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis C]
 gi|254365610|ref|ZP_04981655.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254552051|ref|ZP_05142498.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187997|ref|ZP_05765471.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis CPHL_A]
 gi|260206297|ref|ZP_05773788.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis K85]
 gi|289448645|ref|ZP_06438389.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis CPHL_A]
 gi|289553237|ref|ZP_06442447.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis KZN
           605]
 gi|289575680|ref|ZP_06455907.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis K85]
 gi|289746772|ref|ZP_06506150.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           02_1987]
 gi|289751650|ref|ZP_06511028.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T92]
 gi|289755089|ref|ZP_06514467.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis EAS054]
 gi|289759098|ref|ZP_06518476.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T85]
 gi|294993940|ref|ZP_06799631.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis 210]
 gi|297635597|ref|ZP_06953377.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis KZN
           4207]
 gi|297732595|ref|ZP_06961713.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis KZN
           R506]
 gi|298526443|ref|ZP_07013852.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           94_M4241A]
 gi|306777265|ref|ZP_07415602.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu001]
 gi|306781176|ref|ZP_07419513.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu002]
 gi|306785814|ref|ZP_07424136.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu003]
 gi|306789854|ref|ZP_07428176.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu004]
 gi|306794666|ref|ZP_07432968.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu005]
 gi|306798909|ref|ZP_07437211.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu006]
 gi|306804754|ref|ZP_07441422.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu008]
 gi|306808948|ref|ZP_07445616.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu007]
 gi|306969046|ref|ZP_07481707.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu009]
 gi|306973383|ref|ZP_07486044.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu010]
 gi|307081091|ref|ZP_07490261.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu011]
 gi|307085693|ref|ZP_07494806.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu012]
 gi|313659927|ref|ZP_07816807.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis KZN
           V2475]
 gi|54039023|sp|P64323|RECG_MYCBO RecName: Full=ATP-dependent DNA helicase recG
 gi|54041650|sp|P64322|RECG_MYCTU RecName: Full=ATP-dependent DNA helicase recG
 gi|1694858|emb|CAB05438.1| PROBABLE ATP-DEPENDENT DNA HELICASE RECG [Mycobacterium
           tuberculosis H37Rv]
 gi|13882836|gb|AAK47377.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis
           CDC1551]
 gi|31619745|emb|CAD96685.1| PROBABLE ATP-DEPENDENT DNA HELICASE RECG [Mycobacterium bovis
           AF2122/97]
 gi|124602118|gb|EAY61128.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis C]
 gi|134151123|gb|EBA43168.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506974|gb|ABQ74783.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis H37Ra]
 gi|148722690|gb|ABR07315.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis F11]
 gi|253319438|gb|ACT24041.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis KZN
           1435]
 gi|289421603|gb|EFD18804.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis CPHL_A]
 gi|289437869|gb|EFD20362.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis KZN
           605]
 gi|289540111|gb|EFD44689.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis K85]
 gi|289687300|gb|EFD54788.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           02_1987]
 gi|289692237|gb|EFD59666.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T92]
 gi|289695676|gb|EFD63105.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis EAS054]
 gi|289714662|gb|EFD78674.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis T85]
 gi|298496237|gb|EFI31531.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214410|gb|EFO73809.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu001]
 gi|308326011|gb|EFP14862.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu002]
 gi|308329589|gb|EFP18440.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu003]
 gi|308333680|gb|EFP22531.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu004]
 gi|308337078|gb|EFP25929.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu005]
 gi|308340890|gb|EFP29741.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu006]
 gi|308344727|gb|EFP33578.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu007]
 gi|308348707|gb|EFP37558.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu008]
 gi|308353403|gb|EFP42254.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu009]
 gi|308357279|gb|EFP46130.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu010]
 gi|308361292|gb|EFP50143.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu011]
 gi|308364809|gb|EFP53660.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           SUMu012]
 gi|323718446|gb|EGB27619.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904587|gb|EGE51520.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis W-148]
 gi|328457710|gb|AEB03133.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis KZN
           4207]
          Length = 737

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           +R+  MH  +   ++   +   R G+ DVLV   ++  G+D+P   ++ ++DAD+ G   
Sbjct: 558 LRLALMHGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGI-- 615

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTI 693
             + L Q  GR  R  +  V L A  +
Sbjct: 616 --SQLHQLRGRIGRGEHPSVCLLASWV 640


>gi|330038909|ref|XP_003239737.1| eukaryotic initiation factor 4a [Cryptomonas paramecium]
 gi|327206662|gb|AEA38839.1| eukaryotic initiation factor 4a [Cryptomonas paramecium]
          Length = 390

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V +K+ AE L E +      V  +H  +   +R  I+++ RLG   VL+  +LL  G
Sbjct: 260 IVYVNSKKKAEWLAEKMSSNGFEVLCLHGSITQADRSAIMKNFRLGIRRVLITTDLLSRG 319

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +D+ +  LV   D        SK   I  IGR+ R
Sbjct: 320 IDVQQVCLVINYDLPT-----SKEIYIHRIGRSGR 349


>gi|326433091|gb|EGD78661.1| eIF4AIII-PA [Salpingoeca sp. ATCC 50818]
          Length = 366

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LTE + E N  V  MH ++   +R EI+++ R
Sbjct: 253 DLYDTLTIT-----QAVIFCNTRRKVDWLTEKMKEANFTVSSMHGDMPQKKRNEIMQEFR 307

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  ++   GLD+ +  LV
Sbjct: 308 SGATRVLITTDVWARGLDVQQVSLV 332


>gi|315641802|ref|ZP_07896806.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
 gi|315482477|gb|EFU73016.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
          Length = 522

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  +   +H ++   +R+ ++R  + G  D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|315445551|ref|YP_004078430.1| DEAD/DEAH box helicase [Mycobacterium sp. Spyr1]
 gi|315263854|gb|ADU00596.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
          Length = 505

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ + + L ER  RV  +H ++    R + ++  R G  DVLV  ++   G+DI
Sbjct: 270 TKRTAQKVADELGERGFRVGAVHGDLGQSAREKALKGFRNGDVDVLVATDVAARGIDI 327


>gi|311103602|ref|YP_003976455.1| primosomal protein N' [Achromobacter xylosoxidans A8]
 gi|310758291|gb|ADP13740.1| primosomal protein N' [Achromobacter xylosoxidans A8]
          Length = 681

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R+ E L E   E  I      S  K      +   +  G+ D+LVG  ++ +G D   
Sbjct: 436 TQRVEEHLAELFPEARILRIDADSTRKKGSAEALFASVHAGEVDILVGTQMVAKGHDFAR 495

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAARNVNSKVIL 688
            GLV +L+AD   F        R    L+Q  GRA R+  +  +L
Sbjct: 496 LGLVGVLNADSMLFAHDFRAPERLFAQLMQVAGRAGRHQGNGEVL 540


>gi|298253895|ref|ZP_06977482.1| transcription-repair coupling factor [Gardnerella vaginalis 5-1]
 gi|297532038|gb|EFH71013.1| transcription-repair coupling factor [Gardnerella vaginalis 5-1]
          Length = 1202

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 18/181 (9%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF-VSYYDYYQPEAYVPRTDTYIEKES 249
           A ++P +V+ P+   A    +  ++++  +A +   +  ++    E   PR DT   + +
Sbjct: 89  AKKKPVVVIVPSSRDAEDFIASVRDWYDGDAQDVAKLEAWETLPHERLSPRADTVASRIA 148

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSV-----SCIYGIGSVESYSQMIVQLKIGDSVE 304
                  R+ H    + L     ++V  V       + GIG ++      +  + G  + 
Sbjct: 149 VFR----RLCHPENNTSLFGPIRVLVMPVRSLIQPVVEGIGDIDP-----LLFECGKELT 199

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEF 363
            +  +  LV+  Y R D+ + RG F V G  I++F P+    V  R+  FG++I+ I +F
Sbjct: 200 LEYAVKRLVENAYTRVDLVMERGEFAVRGGIIDVFAPTMTHPV--RIEFFGDEIDTIKQF 257

Query: 364 Y 364
           +
Sbjct: 258 H 258


>gi|294054382|ref|YP_003548040.1| transcription-repair coupling factor [Coraliomargarita akajimensis
           DSM 45221]
 gi|293613715|gb|ADE53870.1| transcription-repair coupling factor [Coraliomargarita akajimensis
           DSM 45221]
          Length = 1133

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 33/139 (23%)

Query: 604 ERNIRVRYMHSEVKTLERI--------------------------EIIRDLRLGKFDVLV 637
           +R  +V Y+H+ V T+E +                          +I+     G+FDVLV
Sbjct: 783 DRGGQVFYLHNRVGTIEGVANQIREMHPKLNVAVGHGQMTEGALEKIMTKFVAGEFDVLV 842

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP C  + I  AD+ G       L Q  GR  R    K   YA  +    
Sbjct: 843 CTTIIESGIDIPNCNTLIIEGADRFGL----AQLYQIRGRVGR---FKQQAYAYLLLHRH 895

Query: 698 QLAIDETTRRREKQLEHNK 716
              +D+  +R     +HN+
Sbjct: 896 AALVDQAQKRLNALKQHNQ 914


>gi|291395377|ref|XP_002714089.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 4
           [Oryctolagus cuniculus]
          Length = 692

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 510 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 569

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 570 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 613


>gi|291276629|ref|YP_003516401.1| ATP-dependent DNA helicase [Helicobacter mustelae 12198]
 gi|290963823|emb|CBG39659.1| ATP-dependent DNA helicase [Helicobacter mustelae 12198]
          Length = 615

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 150 SGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT-MAKVIEAMQRPAIVMAPNKILAA 207
           +  Q +AIA + K +   R   ++++G  G GKT   +A V+ A     ++M P  ILA 
Sbjct: 231 TNSQTSAIATIAKDLSGERAARRIIMGDVGCGKTIVILASVVMAYPHQCLLMVPTTILAF 290

Query: 208 QLYSEFKNFFP 218
           Q+Y E K   P
Sbjct: 291 QIYEEAKKLLP 301


>gi|217967527|ref|YP_002353033.1| ATP-dependent DNA helicase RecG [Dictyoglomus turgidum DSM 6724]
 gi|217336626|gb|ACK42419.1| ATP-dependent DNA helicase RecG [Dictyoglomus turgidum DSM 6724]
          Length = 779

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            K++ E+L ++    NI +  +H  V   ER  I+ + + G+  +LV   ++  G+DIP 
Sbjct: 583 AKKLYEELKKFFPRFNIGL--IHGLVPREERTRIMEEFQKGEIQILVATTVIEVGVDIPN 640

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
             ++ I +AD+ G       L Q  GR  R    S   L AD
Sbjct: 641 ASIMVIENADRFGL----AQLHQLRGRVGRGSEQSYCFLIAD 678


>gi|206900533|ref|YP_002251220.1| transcription-repair coupling factor [Dictyoglomus thermophilum
           H-6-12]
 gi|206739636|gb|ACI18694.1| transcription-repair coupling factor [Dictyoglomus thermophilum
           H-6-12]
          Length = 1070

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 2/111 (1%)

Query: 254 QIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           Q+   R  A   ++  N   +V+S+ S IY +   E+  + I+++K+G+ + ++++   L
Sbjct: 103 QVQGKRLKAISDIIYNNSFSIVASLKSLIYPLIPKENIEKRILKIKVGEEITREKIEKFL 162

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            +  Y+R       G + + G  ++IFP   E+   R+  FG++I  I  F
Sbjct: 163 AENLYQRTPQVEKIGEYSIRGGILDIFPPLYEN-PIRIEFFGDEISSIRFF 212


>gi|194871760|ref|XP_001972900.1| GG15782 [Drosophila erecta]
 gi|190654683|gb|EDV51926.1| GG15782 [Drosophila erecta]
          Length = 592

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +QGL+  +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G   VL+
Sbjct: 361 RQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFREGSIWVLI 420

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+  G+D     LV   D     F  +  S I  IGR  R
Sbjct: 421 CTELMGRGIDFKGVNLVINYD-----FPPTTISYIHRIGRTGR 458


>gi|226224546|ref|YP_002758653.1| ATP-dependent DNA helicase [Listeria monocytogenes Clip81459]
 gi|254931887|ref|ZP_05265246.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|225877008|emb|CAS05717.1| Putative ATP-dependent DNA helicase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293583439|gb|EFF95471.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|332312382|gb|EGJ25477.1| ATP-dependent DNA helicase [Listeria monocytogenes str. Scott A]
          Length = 467

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 12/106 (11%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           +K++AE +   L E  ++RV Y H ++ T +RI I +    G+ DV+   +    G+D  
Sbjct: 236 SKKLAESIAHELSEIADLRVAYYHGDMDTEDRIIIQQQFVYGQLDVICATSAFGMGIDKA 295

Query: 650 ECGLVA--ILDADKEGFLRSKTSLIQTIGRAARNVNSKV--ILYAD 691
           +   V    + AD E +L       Q IGRA R+  + V  +LYA+
Sbjct: 296 DIRYVIHYHMPADLEAYL-------QEIGRAGRDGENSVAILLYAN 334


>gi|145225254|ref|YP_001135932.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           gilvum PYR-GCK]
 gi|145217740|gb|ABP47144.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum
           PYR-GCK]
          Length = 505

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ + + L ER  RV  +H ++    R + ++  R G  DVLV  ++   G+DI
Sbjct: 270 TKRTAQKVADELGERGFRVGAVHGDLGQSAREKALKGFRNGDVDVLVATDVAARGIDI 327


>gi|119716507|ref|YP_923472.1| type III restriction enzyme, res subunit [Nocardioides sp. JS614]
 gi|119537168|gb|ABL81785.1| type III restriction enzyme, res subunit [Nocardioides sp. JS614]
          Length = 558

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 11/76 (14%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR- 666
           R  Y+HS +   +R  ++   RLG+  ++  +++  EG+D+P+  L+A        FLR 
Sbjct: 401 RASYLHSGLSRQQRQILLNAFRLGRVPIITCVDVFNEGVDVPDVNLIA--------FLRV 452

Query: 667 --SKTSLIQTIGRAAR 680
             S+   +Q +GR  R
Sbjct: 453 THSRRIFVQQLGRGLR 468


>gi|330685491|gb|EGG97144.1| primosomal protein N' [Staphylococcus epidermidis VCU121]
          Length = 802

 Score = 41.6 bits (96), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +++ D   GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 594 KLLTDFENGKGDILLGTQMIAKGLDYPNITLVGVLNADTMLNLPDFRASERTYQLLTQVA 653

Query: 676 GRAARN 681
           GRA R+
Sbjct: 654 GRAGRH 659


>gi|331217149|ref|XP_003321253.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300243|gb|EFP76834.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 574

 Score = 41.6 bits (96), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 40/70 (57%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V TKR+A+DLT+YL +       +H + +  ER  ++ + + G+  +++  ++  
Sbjct: 359 KVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQQERDWVLEEFKSGRSPIMIATDVAS 418

Query: 644 EGLDIPECGL 653
            GL +P   L
Sbjct: 419 RGLAVPHIHL 428


>gi|225860052|ref|YP_002741561.1| transcription-repair coupling factor [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229483|ref|ZP_06963164.1| transcription-repair coupling factor [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255135|ref|ZP_06978721.1| transcription-repair coupling factor [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298501796|ref|YP_003723736.1| transcription-repair coupling factor [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727732|gb|ACO23583.1| transcription-repair coupling factor [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237391|gb|ADI68522.1| transcription-repair coupling factor [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327388991|gb|EGE87339.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA04375]
          Length = 1169

 Score = 41.6 bits (96), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 130/309 (42%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  ++M+     A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDRIVLLMSTYG-EAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|218557995|ref|YP_002390908.1| transcription-repair coupling factor [Escherichia coli S88]
 gi|218364764|emb|CAR02454.1| transcription-repair coupling factor [Escherichia coli S88]
 gi|294491241|gb|ADE89997.1| transcription-repair coupling factor [Escherichia coli IHE3034]
 gi|307627415|gb|ADN71719.1| transcription-repair coupling factor [Escherichia coli UM146]
 gi|323957940|gb|EGB53652.1| transcription-repair coupling protein [Escherichia coli H263]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|167391022|ref|XP_001733479.1| ATP-dependent RNA helicase DDX3X [Entamoeba dispar SAW760]
 gi|165896682|gb|EDR24029.1| ATP-dependent RNA helicase DDX3X, putative [Entamoeba dispar
           SAW760]
          Length = 392

 Score = 41.6 bits (96), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 15/117 (12%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E + D +   A +G + ++ V TK+ A+ L  YLY+   +V  +H +     R +  RD 
Sbjct: 177 EAILDVLREFAGKGEKTVIFVETKKGADMLENYLYDHGYKVDSIHGD-----RSQADRDF 231

Query: 629 RLGKF-----DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            L +F      +LV  ++   GLDIP+  +V   D   E       S +  +GR  R
Sbjct: 232 SLKRFKENVIQLLVATDVASRGLDIPDIEVVINYDMPNE-----IESYVHRVGRTGR 283


>gi|33597889|ref|NP_885532.1| transcription-repair coupling factor [Bordetella parapertussis
           12822]
 gi|33574318|emb|CAE38652.1| transcription-repair coupling factor [Bordetella parapertussis]
          Length = 1151

 Score = 41.6 bits (96), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 36/186 (19%), Positives = 74/186 (39%), Gaps = 13/186 (6%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           GSG  + +A +     +P +V+  + + A +L  E   F P   V      ++    +A+
Sbjct: 34  GSGDGWLLADLARQASKPLVVLTADPLEAQRLADEIPQFAPELRVRQLPD-WETLPYDAF 92

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
            P  D   ++  +++  ++           +  D + V   + +Y +      +      
Sbjct: 93  SPHQDLISQRLRTLHALMN-----------QGVDILTVPVTTALYRLAPPAFLAAYTFSF 141

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           K  D +++  L + L    Y         G F + G  I++FP     V +R+ +F ++I
Sbjct: 142 KQKDRLDEAALRAQLTLANYSHVTQVTAPGEFCLRGGLIDLFPMG-SVVPYRLDLFDDEI 200

Query: 358 EEISEF 363
           E I  F
Sbjct: 201 ESIRSF 206


>gi|33594190|ref|NP_881834.1| putative primosomal protein [Bordetella pertussis Tohama I]
 gi|33564265|emb|CAE43557.1| putative primosomal protein [Bordetella pertussis Tohama I]
 gi|332383604|gb|AEE68451.1| putative primosomal protein [Bordetella pertussis CS]
          Length = 680

 Score = 41.6 bits (96), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R+ E L E+  +  I      S  +      +   +  G+ D++VG  ++ +G D   
Sbjct: 438 TQRIEEQLAEWFPQARIARIDADSTRRKGSAQALFAAVHAGEVDIMVGTQMVAKGHDFAR 497

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAARNVNSKVIL 688
            GLV +L+AD   F        R    L+Q  GRA R+     +L
Sbjct: 498 LGLVGVLNADSMLFAHDFRAPERLFAQLMQVAGRAGRHAAGAQVL 542


>gi|34763212|ref|ZP_00144176.1| DNA/RNA HELICASE (DEAD/DEAH BOX FAMILY) [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887122|gb|EAA24229.1| DNA/RNA HELICASE (DEAD/DEAH BOX FAMILY) [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 942

 Score = 41.6 bits (96), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 13/128 (10%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED--LTEYLYERNIRVRYMHSEVKTLE 620
           ++ T+V+ + ++    +  G R+   +   ++ E   L E   E+ ++   + SE    E
Sbjct: 414 TSDTRVKHILEKSKYYSYSGERLNCLIFVSKVEEAKILVEKFLEQGVKAIALSSENSDNE 473

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS---LIQTIGR 677
           R E IR L  G+ + ++ +++  EG+DIP C    IL       LR  TS    IQ +GR
Sbjct: 474 REEAIRKLEQGEIEYIISVDIFNEGVDIP-CVNQVIL-------LRPTTSAIVYIQQLGR 525

Query: 678 AARNVNSK 685
             R   +K
Sbjct: 526 GLRKYKNK 533


>gi|328772390|gb|EGF82428.1| hypothetical protein BATDEDRAFT_29496 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 508

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 34/66 (51%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RIL+  L K+ A  L ++L      V  +H ++  ++R   I   R GK  +L+  ++  
Sbjct: 340 RILIFALYKKEASRLDQFLKRNGYNVASIHGDLSQVQRTAAIDGFRSGKIPLLIATDVAA 399

Query: 644 EGLDIP 649
            G+DIP
Sbjct: 400 RGIDIP 405


>gi|325684686|gb|EGD26840.1| cold-shock DEAD box protein A [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 478

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++    R+++++  + G+ D+LV  ++   GLDI  
Sbjct: 250 TKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILVATDVAARGLDI-- 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            G+  + + D     +   S +  IGRA ++
Sbjct: 308 SGVTHVYNYD---IPQDPDSYVHRIGRAGKS 335


>gi|300783035|ref|YP_003763326.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
 gi|299792549|gb|ADJ42924.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
          Length = 598

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL ++ +  TKR A+ + + L ER      +H ++    R + +R  R GK DVLV
Sbjct: 312 AEDRGLTMIFS-RTKRTAQKVADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLV 370

Query: 638 GINLLREGLDI 648
             ++   G+DI
Sbjct: 371 ATDVAARGIDI 381


>gi|293189188|ref|ZP_06607912.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
 gi|292821860|gb|EFF80795.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
          Length = 502

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 14/134 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A+   R ++   TKR A  L E L  R   V  +H ++    R + +R  R GK DVL
Sbjct: 309 LQAEGRGRTVIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQGAREQALRAFRNGKVDVL 368

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL----YADT 692
           V  ++   G+D+ +   V      ++     +   I  IGR  R  NS   +    + DT
Sbjct: 369 VATDVAARGIDVDDVTHVINYQCPED-----EKIYIHRIGRTGRAGNSGTAVTFVDWDDT 423

Query: 693 -----ITKSIQLAI 701
                I+K++ L +
Sbjct: 424 PRWSLISKALGLGV 437


>gi|281178224|dbj|BAI54554.1| transcription-repair coupling factor [Escherichia coli SE15]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 231 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.7 bits (86), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|219559003|ref|ZP_03538079.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis T17]
          Length = 318

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           +R+  MH  +   ++   +   R G+ DVLV   ++  G+D+P   ++ ++DAD+ G   
Sbjct: 139 LRLALMHGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGI-- 196

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTI 693
             + L Q  GR  R  +  V L A  +
Sbjct: 197 --SQLHQLRGRIGRGEHPSVCLLASWV 221


>gi|209549324|ref|YP_002281241.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535080|gb|ACI55015.1| ATP-dependent DNA helicase RecG [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 701

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 6/66 (9%)

Query: 156 AIAQLLKGIHSREK-VQLLLGVTGSGKTF----TMAKVIEAMQRPAIVMAPNKILAAQLY 210
           AIA++LK +   E+ ++LL G  GSGKT      MA VIE+  + A++MAP +ILA Q +
Sbjct: 281 AIAEVLKDMAGTERMLRLLQGDVGSGKTLVALMAMAAVIESGGQ-AVLMAPTEILARQHH 339

Query: 211 SEFKNF 216
           +    F
Sbjct: 340 ATISKF 345


>gi|56090019|gb|AAV70960.1| Vasa [Carassius gibelio]
          Length = 701

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R G+  VLV  ++  
Sbjct: 518 RTMVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALSDFRTGQCPVLVATSVAA 577

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDI +   V   D        S    +  IGR  R  N
Sbjct: 578 RGLDIEQVQHVVNFD-----LPSSIDEYVHRIGRTGRCGN 612


>gi|333008322|gb|EGK27796.1| transcription-repair coupling factor [Shigella flexneri K-272]
 gi|333019810|gb|EGK39082.1| transcription-repair coupling factor [Shigella flexneri K-227]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|329571432|gb|EGG53119.1| putative DEAD-box ATP-dependent RNA helicase CshB [Enterococcus
           faecalis TX1467]
          Length = 324

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 83/155 (53%), Gaps = 14/155 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++T+YL ++ ++V  +H ++   ER  ++R ++   +  +V  +L   G+DI  
Sbjct: 127 TKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAARGIDIE- 185

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVI-LYA----DTITKSIQLAIDET 704
            G+  +++A+    L      I  +GR  RN +N   I LY+    + IT+  QL +  +
Sbjct: 186 -GVSHVINAEVPHEL---DFFIHRVGRTGRNGLNGTAITLYSPADDEAITQIEQLGV--S 239

Query: 705 TRRRE-KQLEHNKKHNINPQSVKEKIMEVIDPILL 738
            + +E K  E  + ++ N ++ +EK  E +DP L+
Sbjct: 240 FKPKEIKNGEIVETYDRNRRTKREKSREELDPTLI 274


>gi|325928505|ref|ZP_08189695.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
 gi|325541118|gb|EGD12670.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
          Length = 537

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA RN ++  IL+     K +  +I+
Sbjct: 311 GLDVERISHVLNYDIPYDTESYVHR----IGRTGRAGRNGDA--ILFVTPREKGMLRSIE 364

Query: 703 ETTRRREKQLEHNKKHNIN 721
             TR+  ++++      +N
Sbjct: 365 RATRQPIEEMQLPSVDAVN 383


>gi|313607919|gb|EFR84063.1| ATP-dependent DNA helicase RecQ [Listeria monocytogenes FSL F2-208]
          Length = 467

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 28/184 (15%)

Query: 523 PTTIVVSATPGS---------WELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVY 572
           P T+V++AT              L  C+ II   + RP   +   VE   S + + E +Y
Sbjct: 164 PVTMVLTATATKKVRADILTQLHLTDCEQIIYS-VNRPN--ISLQVEKFSSQQLKKERLY 220

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLG 631
           + +      G+   +   +K++AE +   L E   +RV Y H ++ T +RI I +    G
Sbjct: 221 ELVCKLQTPGI---IYFSSKKLAESIAHELSEIAELRVAYYHGDMDTEDRIIIQQQFVYG 277

Query: 632 KFDVLVGINLLREGLDIPECGLVA--ILDADKEGFLRSKTSLIQTIGRAARNVNSKV--I 687
           + D++   +    G+D  +   V    + AD E +L       Q IGRA R+    V  +
Sbjct: 278 QLDIICATSAFGMGIDKADIRFVIHYHMPADLEAYL-------QEIGRAGRDGKDSVAIL 330

Query: 688 LYAD 691
           LYA+
Sbjct: 331 LYAN 334


>gi|291542590|emb|CBL15700.1| primosomal protein N' [Ruminococcus bromii L2-63]
          Length = 815

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 7/60 (11%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDA-------DKEGFLRSKTSLIQTIGRAARNVN 683
           GK+D+LVG  ++ +GL+ P   LV +L+        D   + R+ + L Q +GR+ R  +
Sbjct: 611 GKYDILVGTQMVAKGLNFPNVTLVGVLNTDYMLYADDYRSYERTFSLLTQVVGRSGRGAS 670


>gi|260202115|ref|ZP_05769606.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis T46]
 gi|289444537|ref|ZP_06434281.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis T46]
 gi|289417456|gb|EFD14696.1| ATP-dependent DNA helicase RecG [Mycobacterium tuberculosis T46]
          Length = 737

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           +R+  MH  +   ++   +   R G+ DVLV   ++  G+D+P   ++ ++DAD+ G   
Sbjct: 558 LRLALMHGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGI-- 615

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTI 693
             + L Q  GR  R  +  V L A  +
Sbjct: 616 --SQLHQLRGRIGRGEHPSVCLLASWV 640


>gi|241895658|ref|ZP_04782954.1| ATP-dependent DNA helicase RecG [Weissella paramesenteroides ATCC
           33313]
 gi|241871025|gb|EER74776.1| ATP-dependent DNA helicase RecG [Weissella paramesenteroides ATCC
           33313]
          Length = 678

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L+ Y +     V  +H  +   E+  ++   +  +F VLV   ++  G+D+P   ++ 
Sbjct: 489 EELSTY-FAPKFNVGLLHGRLSNDEKDTVMTAFKANEFQVLVATTVIEVGVDVPNATVML 547

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN 681
           ILDAD+ G     + L Q  GR  R 
Sbjct: 548 ILDADRFGL----SQLHQLRGRVGRG 569


>gi|189441606|gb|AAI67373.1| dicer1 protein [Xenopus (Silurana) tropicalis]
          Length = 811

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           EV+  ++ E++R  R  + ++L+  +++ EG+DIP+C LV   D   E       S +Q+
Sbjct: 486 EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPSE-----YRSYVQS 540

Query: 675 IGRAARNVNSKVILYADT 692
            GR AR   S  I+ AD+
Sbjct: 541 KGR-ARAPISNYIMLADS 557


>gi|161527600|ref|YP_001581426.1| DEAD/DEAH box helicase domain-containing protein [Nitrosopumilus
           maritimus SCM1]
 gi|160338901|gb|ABX11988.1| DEAD/DEAH box helicase domain protein [Nitrosopumilus maritimus
           SCM1]
          Length = 913

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 19/179 (10%)

Query: 517 EWNCLRP-TTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDV 571
           E+N   P T I +SAT G++E E  + ++      +IIR T +    VE++     + DV
Sbjct: 178 EFNSELPLTKIGLSATVGNFE-EAGKFVVGTKRKCEIIRDTSVRKYDVEVKYVDGTISDV 236

Query: 572 YDEI-----NLAAQQGLRILLTVLTKRMAEDLTEYLYERNI-RVRYMHSEVKTLERIEII 625
            ++I     NL       +LL   T+  +E L   L E++I  +   H  +    R E  
Sbjct: 237 AEKIIEHVSNLNLDSP--VLLFTNTRGESEFLASILKEKSIIPIELHHGSLSKEVREETE 294

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           ++LR GK  ++V  + L  GLDI    LV        G  R  + L+Q IGR+  N N+
Sbjct: 295 QNLREGKRGIVVCTSSLELGLDIGSVELVI-----HYGSPRQVSKLVQRIGRSRHNRNA 348


>gi|90109237|pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
           Coupling Factor
 gi|90109238|pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
           Coupling Factor
          Length = 1151

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 19  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 78

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 79  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 127

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 128 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 178

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 179 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 233

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 234 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 276

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 277 SYFPANTLL 285



 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 826 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 884 NTIIIERADHFGL----AQLHQLRGRVGRS 909


>gi|115456051|ref|NP_001051626.1| Os03g0805200 [Oryza sativa Japonica Group]
 gi|75326432|sp|Q75HJ0|RH37_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 37; AltName:
           Full=OsPL10a
 gi|41469394|gb|AAS07217.1| putative helicase [Oryza sativa Japonica Group]
 gi|108711635|gb|ABF99430.1| ATP-dependent RNA helicase An3, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113550097|dbj|BAF13540.1| Os03g0805200 [Oryza sativa Japonica Group]
 gi|222626000|gb|EEE60132.1| hypothetical protein OsJ_13017 [Oryza sativa Japonica Group]
          Length = 637

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L  +LY        +H +    ER   +R  + G   +LV  ++   G
Sbjct: 437 LVFVETKRGADALENWLYTNGFPATSIHGDRTQQEREYALRSFKSGATPILVATDVAARG 496

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R   S +
Sbjct: 497 LDIPHVAHVINFDLPND-----IDDYVHRIGRTGRAGKSGL 532


>gi|157158427|ref|YP_001462347.1| transcription-repair coupling factor [Escherichia coli E24377A]
 gi|193070928|ref|ZP_03051859.1| transcription-repair coupling factor [Escherichia coli E110019]
 gi|157080457|gb|ABV20165.1| transcription-repair coupling factor [Escherichia coli E24377A]
 gi|192955782|gb|EDV86254.1| transcription-repair coupling factor [Escherichia coli E110019]
 gi|324117315|gb|EGC11222.1| transcription-repair coupling protein [Escherichia coli E1167]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|71276350|ref|ZP_00652627.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Dixon]
 gi|71901364|ref|ZP_00683458.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|170729445|ref|YP_001774878.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
 gi|71162812|gb|EAO12537.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Dixon]
 gi|71728863|gb|EAO31000.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|167964238|gb|ACA11248.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
          Length = 609

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 4/121 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R +    ++ +++  +R   I  L+ GK D+LV  ++   
Sbjct: 251 MIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+     V  L+ D    + S    I   GRA R  + + IL+     K +   I+  
Sbjct: 311 GLDVERISHV--LNYDIPYDVESYVHRIGRTGRAGR--SGEAILFVTPREKGMLRQIERA 366

Query: 705 T 705
           T
Sbjct: 367 T 367


>gi|333026815|ref|ZP_08454879.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
 gi|332746667|gb|EGJ77108.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
          Length = 492

 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +AA+ G R+LL + TK   + LTE+L    +R   +H      +R   +   + G   VL
Sbjct: 302 IAARDG-RVLLFLDTKHAVDRLTEHLLRSGVRAAALHGGKSQPQRTRTLEQFKTGHVSVL 360

Query: 637 VGINLLREGLDIPECGLVAILD 658
           V  N+   G+ + +  LV  +D
Sbjct: 361 VATNVAARGIHVDDLDLVVNVD 382


>gi|332092875|gb|EGI97943.1| transcription-repair coupling factor [Shigella dysenteriae 155-74]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|327297022|ref|XP_003233205.1| ATP-dependent DNA helicase [Trichophyton rubrum CBS 118892]
 gi|326464511|gb|EGD89964.1| ATP-dependent DNA helicase [Trichophyton rubrum CBS 118892]
          Length = 1181

 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++EII+  + G ++ +V  ++  EGLDI E  L+   D+       S   ++Q +GR  
Sbjct: 768 KQLEIIKKFKEGTYNTIVATSIGEEGLDIGEVDLIICYDSSA-----SPIRMLQRMGRTG 822

Query: 680 RNVNSKVIL 688
           R    KV+L
Sbjct: 823 RKRTGKVVL 831


>gi|306824746|ref|ZP_07458090.1| DNA helicase RecG [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432957|gb|EFM35929.1| DNA helicase RecG [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 671

 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 58/104 (55%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++E+LT + +     V  +H ++K+ E+ +I+++ +  K D+LV   ++  G+++    +
Sbjct: 484 LSEELTAH-FAGKAEVALLHGKMKSDEKDQIMQEFKERKTDILVSTTVIEVGVNVSNATV 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T+S
Sbjct: 543 MIIMDADRFGL----SQLHQLRGRVGRGDKQSYAVLVANPKTES 582


>gi|301299426|ref|ZP_07205705.1| DEAD/DEAH box helicase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852962|gb|EFK80567.1| DEAD/DEAH box helicase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 526

 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 27/175 (15%)

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           ++ +R ++++D   GK++VL    LL EG D P    V +L   K   L S     Q +G
Sbjct: 264 ESTDREQVLKDYEEGKYNVLCNSMLLTEGWDCPSVDCVIVLRPTKVRALYS-----QMVG 318

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-- 734
           R  R    K  L          L +D        +L H        ++V +K+ E I+  
Sbjct: 319 RGTRLAPGKKEL----------LLLDFLWHTERHELCHPANLIATDEAVAKKMTENIEEL 368

Query: 735 --PILLEDA---ATTNISID-----AQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
             PI LE A   A  +I+++     A+QLS  K++ +  +  L+ +M + A +L 
Sbjct: 369 GTPIDLEQAEQQAKEDIALEREESLAKQLSEMKRRKRKLVDPLQFEMSIQASDLT 423


>gi|297294301|ref|XP_002804411.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 [Macaca
           mulatta]
          Length = 705

 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 523 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 582

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 583 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 626


>gi|283784907|ref|YP_003364772.1| transcription-repair coupling factor [Citrobacter rodentium ICC168]
 gi|282948361|emb|CBG87947.1| transcription-repair coupling factor [Citrobacter rodentium ICC168]
          Length = 1148

 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 100/242 (41%), Gaps = 33/242 (13%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHVGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQEI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSYLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G S+ +  L S L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQSLSRDALRSQLDGAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E   +R+  F ++I+ +  F   T + +  V  I +     +    PT  TA++  + +
Sbjct: 176 SEQ-PYRLDFFDDEIDSLRLFDADTQRTLEEVAEINLLPAHEF----PTDKTAIELFRSQ 230

Query: 403 LK 404
            +
Sbjct: 231 WR 232


>gi|282895664|ref|ZP_06303789.1| Primosomal protein n [Raphidiopsis brookii D9]
 gi|281199358|gb|EFA74223.1| Primosomal protein n [Raphidiopsis brookii D9]
          Length = 884

 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 12/81 (14%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFL---------RSKTSLIQTIGRAARN 681
           G+ D+LVG  +L +GLD+P+  LV ++ AD  G L         R+  +L Q  GRA R 
Sbjct: 690 GEADLLVGTQMLTKGLDLPQVTLVGVVAAD--GLLHLSDYRASERAFQTLTQVAGRAGRG 747

Query: 682 VNS-KVILYADTITKSIQLAI 701
             S +VI+   T   ++  A+
Sbjct: 748 EESGRVIIQTYTPEHAVIAAV 768


>gi|229490988|ref|ZP_04384821.1| dead/deah box helicase [Rhodococcus erythropolis SK121]
 gi|229322104|gb|EEN87892.1| dead/deah box helicase [Rhodococcus erythropolis SK121]
          Length = 385

 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR A+ + + L ER   V  +H ++  + R + ++  R GK DVLV  ++   G+DI +
Sbjct: 229 TKRTAQKVADDLAERGFSVGAVHGDLGQIAREKALKGFRNGKVDVLVATDVAARGIDIDD 288

Query: 651 C 651
            
Sbjct: 289 V 289


>gi|261401307|ref|ZP_05987432.1| ATP-dependent DNA helicase RecG [Neisseria lactamica ATCC 23970]
 gi|269208687|gb|EEZ75142.1| ATP-dependent DNA helicase RecG [Neisseria lactamica ATCC 23970]
          Length = 680

 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++     G+ +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPELNIGL--VHGRMKAAEKAEVMARFSSGELNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+++
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAESL 589


>gi|224124506|ref|XP_002330040.1| predicted protein [Populus trichocarpa]
 gi|222871465|gb|EEF08596.1| predicted protein [Populus trichocarpa]
          Length = 735

 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 69/141 (48%), Gaps = 10/141 (7%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I +  T    +  ++     +G + ++   TKR A++++  L + +I    +H ++   +
Sbjct: 324 ISTTATSKRTILSDLVTVYAKGEKTIIFTRTKRDADEVSMALTQ-SIASEALHGDISQHQ 382

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI--LDADKEGFL-RSKTSLIQTIGR 677
           R   +   R GKF VLV  ++   GLDIP   L+    L  D E F+ RS  +     GR
Sbjct: 383 RERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRT-----GR 437

Query: 678 AARNVNSKVILYADTITKSIQ 698
           A +   + ++++ ++  ++++
Sbjct: 438 AGKE-GTAILMFTNSQRRTVR 457


>gi|169615935|ref|XP_001801383.1| hypothetical protein SNOG_11134 [Phaeosphaeria nodorum SN15]
 gi|182676441|sp|Q0UAT0|FAL1_PHANO RecName: Full=ATP-dependent RNA helicase FAL1
 gi|160703076|gb|EAT81633.2| hypothetical protein SNOG_11134 [Phaeosphaeria nodorum SN15]
          Length = 374

 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R
Sbjct: 232 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQRERDSIMQDFR 286

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
                VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 287 QANSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 332


>gi|120437484|ref|YP_863170.1| transcription-repair coupling factor [Gramella forsetii KT0803]
 gi|117579634|emb|CAL68103.1| transcription-repair coupling factor [Gramella forsetii KT0803]
          Length = 1125

 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 104/252 (41%), Gaps = 31/252 (12%)

Query: 159 QLLKGIHSREKVQL---LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           +L   I S EK Q    L G+ GS  +F +A   +    P +++  +K  AA   ++ + 
Sbjct: 18  ELRNAIASFEKNQSNIHLKGLVGSALSFVVADAFKESDHPFLLIFNDKEEAAYYLNDLEQ 77

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN-----EQIDRMRHSATRSLLERN 270
                 V ++        P +Y  R    IE+  + N     E ++R+      +L    
Sbjct: 78  LVGEKNVLFY--------PGSY--RRPYQIEETDNANVLLRAEVLNRINSRKKPAL---- 123

Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             IV    +    + + +   +  +++ +GD +    +   L + Q+KR D     G F 
Sbjct: 124 --IVTYPDALFEKVVTRKELDKSTLKIAVGDELSIDFVNEVLFEYQFKRVDFVTEPGEFS 181

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF---YPLTGQKIRNVETIKIYANSHYVT 387
           V G  I++F S   D  +R+  FG++I+ I  F     L+  K + +  +    N H   
Sbjct: 182 VRGGIIDVF-SFSHDEPYRIEFFGDEIDSIRTFDVETQLSTDKKKKISVMPNVENKHLDE 240

Query: 388 PRPTLNTAMKYI 399
            R +    +KYI
Sbjct: 241 VRESF---LKYI 249



 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 14/161 (8%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILL----TVLTKRMAEDLTEYLYERNIRVRYMH 613
           P+E    R   E + D ++   Q+G ++          K +A  +   + +  I V +  
Sbjct: 742 PIESHVIRFSEETIRDAVSYEIQRGGQVFFIHNRVENIKEVAGMIQRLVPDAKIGVGHGQ 801

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            E K LE++ +      G+FDVLV   ++  GLD+ E   + I +A+  G     + L Q
Sbjct: 802 MEGKKLEKLML--SFINGEFDVLVSTTIVESGLDVSEANTIFINNANNFGL----SDLHQ 855

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
             GR  R+ N K   Y  T   S   A+ E  R+R   LE 
Sbjct: 856 MRGRVGRS-NKKAFCYFITPPYS---AMTEDARKRITALEQ 892


>gi|329113371|ref|ZP_08242152.1| Transcription-repair-coupling factor [Acetobacter pomorum DM001]
 gi|326697196|gb|EGE48856.1| Transcription-repair-coupling factor [Acetobacter pomorum DM001]
          Length = 1142

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 5/131 (3%)

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLE----RNDCIVVSSVSCIYGIGSVESYSQMI 294
           P  D       S N  I   R S    LLE    R   ++ +  + +  +   +++    
Sbjct: 51  PAWDCLPYDRVSPNPSIVAERVSTLTRLLEPAKGRPRLVLATVNAVVQRVAPRKTFEGQS 110

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + ++ G+S++Q  L+  L+   Y R D  +  G F   G   +++P+   +   R+ +FG
Sbjct: 111 LSIRTGESLDQGFLIELLIANGYTRTDTVMEAGEFATRGGIFDLYPAGAGE-PLRLDLFG 169

Query: 355 NDIEEISEFYP 365
           +++E I  F P
Sbjct: 170 DEVENIRAFDP 180


>gi|319786302|ref|YP_004145777.1| ATP-dependent DNA helicase RecG [Pseudoxanthomonas suwonensis 11-1]
 gi|317464814|gb|ADV26546.1| ATP-dependent DNA helicase RecG [Pseudoxanthomonas suwonensis 11-1]
          Length = 687

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 8/114 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            +R  E LT  L    +RV  +H  +K   +   +R  + G  D+LV   ++  G+D+P 
Sbjct: 498 AERTFEQLTAQLP--GVRVGLVHGRMKASGKQAAMRAFKDGHTDLLVATTVIEVGVDVPN 555

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKSIQLAID 702
             L+ I +A++ G       L Q  GR  R    +S V+LY   ++ + +  +D
Sbjct: 556 ASLMIIENAERLGL----AQLHQLRGRVGRGAAASSCVLLYQPPLSATARQRLD 605


>gi|313679752|ref|YP_004057491.1| ATP-dependent DNA helicase recg [Oceanithermus profundus DSM 14977]
 gi|313152467|gb|ADR36318.1| ATP-dependent DNA helicase RecG [Oceanithermus profundus DSM 14977]
          Length = 776

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H  +K  E+  ++   R   FDVLV   ++  G+DIP   L+ I +A++ G    
Sbjct: 596 RVEVLHGRMKAEEKDALMERFRNRDFDVLVSTTVIEVGVDIPGANLMIIENAERFGL--- 652

Query: 668 KTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
              L Q  GR  R       +++  DT  K++Q
Sbjct: 653 -AQLHQLRGRVGRGGEQAYCILIAGDTSRKTMQ 684


>gi|254161220|ref|YP_003044328.1| transcription-repair coupling factor [Escherichia coli B str.
           REL606]
 gi|242376916|emb|CAQ31635.1| transcription-repair coupling factor [Escherichia coli BL21(DE3)]
 gi|253973121|gb|ACT38792.1| transcription-repair coupling factor [Escherichia coli B str.
           REL606]
 gi|253977335|gb|ACT43005.1| transcription-repair coupling factor [Escherichia coli BL21(DE3)]
          Length = 1148

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|238881270|gb|EEQ44908.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 904

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EII+  + G F++LV  ++  EGLDI E  L+   D+       S    IQ +GR  R  
Sbjct: 583 EIIKKFKKGVFNILVATSIGEEGLDIGEVDLIICYDS-----TSSPIKNIQRMGRTGRKR 637

Query: 683 NSKVIL 688
           + KV++
Sbjct: 638 DGKVLM 643


>gi|296130315|ref|YP_003637565.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296022130|gb|ADG75366.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 598

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL I+    TKR A  + + L ER      +H ++    R + +R  R GK DVLV
Sbjct: 296 ARGRGLTIVF-ARTKRTAAKVADELVERGFAAGAIHGDLGQGAREQALRAFRHGKVDVLV 354

Query: 638 GINLLREGLDI 648
             ++   G+D+
Sbjct: 355 ATDVAARGIDV 365


>gi|189207078|ref|XP_001939873.1| ATP-dependent RNA helicase fal1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|330936277|ref|XP_003305321.1| hypothetical protein PTT_18129 [Pyrenophora teres f. teres 0-1]
 gi|187975966|gb|EDU42592.1| ATP-dependent RNA helicase fal1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|311317725|gb|EFQ86604.1| hypothetical protein PTT_18129 [Pyrenophora teres f. teres 0-1]
          Length = 399

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQRERDSIMQDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
                VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 312 QANSRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 357


>gi|149726038|ref|XP_001502240.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX41
           (DEAD box protein 41) (DEAD box protein abstrakt
           homolog) [Equus caballus]
          Length = 622

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 495 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 543

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 544 VLMDLKALLLEAKQKVPP 561


>gi|91215486|ref|ZP_01252457.1| transcription-repair coupling factor [Psychroflexus torquis ATCC
           700755]
 gi|91186438|gb|EAS72810.1| transcription-repair coupling factor [Psychroflexus torquis ATCC
           700755]
          Length = 1121

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 103/246 (41%), Gaps = 17/246 (6%)

Query: 157 IAQLLKGIHSREKVQLLL-GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           I +L + + S EK Q+ + G+ GS  +F  ++     +RP +++  +K  AA   ++ + 
Sbjct: 16  IKELSETLLSGEKKQIFIKGLIGSAVSFVQSESFLKSERPFLLVFNDKEEAAYHLNDLEQ 75

Query: 216 FFPH-NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
                N + Y  SY   YQ E     TD         N  I        R    +   I+
Sbjct: 76  LVDEKNVLFYPGSYRRPYQIE----ETD---------NANILLRSEVLNRINSRKKPSII 122

Query: 275 VSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+    I+  + + +   + ++++ + D +    +   L +  +KR D     G F V G
Sbjct: 123 VTYPEAIFEKVVTKKELDRTVLKINLNDELSIDFVNEVLFEYNFKRVDFVTEPGEFSVRG 182

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I++F S   D  +R+  FG++I+ I  F   T    +  + I I  N   V       
Sbjct: 183 GIIDVF-SFSNDEPYRIEFFGDEIDSIRAFDVETQLSTKQKKRIDIMPNVEKVQLDEVRQ 241

Query: 394 TAMKYI 399
           T ++YI
Sbjct: 242 TFLEYI 247


>gi|74187323|dbj|BAE22641.1| unnamed protein product [Mus musculus]
          Length = 406

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+ R G   VL+  +LL   +D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARSIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|22298495|ref|NP_681742.1| transcription-repair coupling factor [Thermosynechococcus elongatus
           BP-1]
 gi|22294675|dbj|BAC08504.1| transcription-repair coupling factor [Thermosynechococcus elongatus
           BP-1]
          Length = 1142

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 270 NDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           N  IV +  +    +   E +    + L++G +    E+ ++L    Y+R  +    G +
Sbjct: 114 NIAIVTTERALQPHLPPPEQFRAACLTLQVGQAYSLGEVATTLAALGYERVSLVETEGQW 173

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
              GD ++IFP   E +  R+  FG++IE I EF P
Sbjct: 174 SRRGDIVDIFPVSAE-LPVRLQWFGDEIESIREFDP 208


>gi|94311500|ref|YP_584710.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans
           CH34]
 gi|93355352|gb|ABF09441.1| ATP-dependent RNA helicase [Cupriavidus metallidurans CH34]
          Length = 634

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I+ T  TKR A+ L E L +       +H ++    R   +  LR G   VLV  ++   
Sbjct: 314 IVFTA-TKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNLRVLVATDVAAR 372

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           G+D+P+   V   D  K+         +  IGR  R   S V +
Sbjct: 373 GIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGVAI 411


>gi|82705769|ref|XP_727104.1| eukaryotic initiation factor 4a-3 [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23482794|gb|EAA18669.1| eukaryotic initiation factor 4a-3 [Plasmodium yoelii yoelii]
          Length = 390

 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   + L + + E N  V  MH+ +   ER +I+   R  K+ VL+  ++   GLD+ E
Sbjct: 265 TKLKVDWLAKKMQESNFTVCKMHAGMSQSERDDIMLKFRQCKYRVLISTDIWGRGLDVHE 324

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        S+ S I  IGR+ R
Sbjct: 325 VSLVVNYDLPN-----SRESYIHRIGRSGR 349


>gi|325268106|ref|ZP_08134752.1| DNA helicase RecG [Kingella denitrificans ATCC 33394]
 gi|324980491|gb|EGC16157.1| DNA helicase RecG [Kingella denitrificans ATCC 33394]
          Length = 681

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 6/91 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            + V  +H  +K  E+  ++ +   G+  VLV   ++  G+D+P   L+ I  A++ G  
Sbjct: 505 GLSVGLVHGRMKAAEKAAVMAEFIAGRLHVLVATTVIEVGVDVPNASLMVIEHAERMGL- 563

Query: 666 RSKTSLIQTIGRAARN--VNSKVILYADTIT 694
                L Q  GR  R    +S V+++A+ ++
Sbjct: 564 ---AQLHQLRGRVGRGAAASSCVLMFAEPLS 591


>gi|300938685|ref|ZP_07153409.1| transcription-repair coupling factor [Escherichia coli MS 21-1]
 gi|300456330|gb|EFK19823.1| transcription-repair coupling factor [Escherichia coli MS 21-1]
          Length = 1164

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 247 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.4 bits (85), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|302915819|ref|XP_003051720.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732659|gb|EEU46007.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 397

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R+  V  MH ++   +R  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 272 TRRKVDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQ 331

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  A++E ++
Sbjct: 332 VSLVINYDLPANRENYI 348


>gi|168019686|ref|XP_001762375.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686453|gb|EDQ72842.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 689

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           PP   R+       + D I++    G  I+ T  TKR A+D+   L  R +    +H ++
Sbjct: 278 PPAAKRTV------LNDLISVHGSVGKTIVFT-QTKRDADDVASVLG-RTLGCEALHGDI 329

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
              +R   +   R G+F VLV  ++   GLDIP   LV
Sbjct: 330 TQSQRERTLASFREGRFSVLVATDVAARGLDIPNVDLV 367


>gi|149007710|ref|ZP_01831319.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP18-BS74]
 gi|307126180|ref|YP_003878211.1| transcription-repair coupling factor [Streptococcus pneumoniae
           670-6B]
 gi|147760705|gb|EDK67677.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP18-BS74]
 gi|306483242|gb|ADM90111.1| transcription-repair coupling factor [Streptococcus pneumoniae
           670-6B]
          Length = 1169

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 130/309 (42%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  ++M+     A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDRIVLLMSTYG-EAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|219850480|ref|YP_002464913.1| ATP-dependent DNA helicase RecG [Chloroflexus aggregans DSM 9485]
 gi|219544739|gb|ACL26477.1| ATP-dependent DNA helicase RecG [Chloroflexus aggregans DSM 9485]
          Length = 862

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 27/198 (13%)

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELE-QCQGIIVEQII--RPTGLVDPPVEIRS---ART 566
           LR +   C  P  +V++ATP    L     G +   ++  RP G      EIR+   +R 
Sbjct: 578 LRLKNKGC-NPHMLVMTATPIPRTLTLTIYGDLDVSVLDERPPGRQ----EIRTRRISRL 632

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDL----TEYLYER-------NIRVRYMHSE 615
           + E  Y  I     +G ++ +       +E L     E +YE+       ++RV  +H +
Sbjct: 633 EREKAYRHIRKQVAEGRQVYVICPLVEESEKLDLPSAEEMYEKLQHEVFPDLRVALLHGK 692

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +   E+  ++R  R  ++D+LV   ++  G+D+P    + I  A++ G       L Q  
Sbjct: 693 MSAREKDGVMRAFRDHQYDILVSTAVIEVGIDVPNATTIVIEGAERFGL----AQLHQFR 748

Query: 676 GRAARNVN-SKVILYADT 692
           GR  R  + S  IL +D+
Sbjct: 749 GRVGRGSHQSYCILISDS 766


>gi|325269118|ref|ZP_08135738.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
 gi|324988505|gb|EGC20468.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
          Length = 572

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 55/109 (50%), Gaps = 10/109 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K+  + +   L  ++I    MHS++   +R +++   + G+ DVLV  +++ 
Sbjct: 247 RVIIFSGSKQKVKQIAASLSRKHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVA 306

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR-NVNSKVILY 689
            G+DI +  +V   D   D E +       +  IGR AR + + K I +
Sbjct: 307 RGIDIDDITMVINYDVPHDAEDY-------VHRIGRTARADRDGKAITF 348


>gi|323479053|gb|ADX78492.1| primosomal protein N [Enterococcus faecalis 62]
          Length = 810

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 15/101 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+++ E+L   L E     R +  +V T  R     +I+R    G+ D+L+G  ++ +GL
Sbjct: 571 TQKVEEELQTLLPES----RILRMDVDTTRRKGAHEKILRTFGEGQADILLGTQMIAKGL 626

Query: 647 DIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           D P   LV +L+AD    L       R+   L Q  GRA R
Sbjct: 627 DFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVSGRAGR 667


>gi|300928331|ref|ZP_07143866.1| transcription-repair coupling factor [Escherichia coli MS 187-1]
 gi|300463663|gb|EFK27156.1| transcription-repair coupling factor [Escherichia coli MS 187-1]
          Length = 1164

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 247 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|270290969|ref|ZP_06197192.1| ATP-dependent RNA helicase YqfR [Pediococcus acidilactici 7_4]
 gi|270280365|gb|EFA26200.1| ATP-dependent RNA helicase YqfR [Pediococcus acidilactici 7_4]
          Length = 453

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK  A++LT YL  + + V  +H  +   ER  I++D+   ++  +V  +L   G+DI  
Sbjct: 252 TKERADELTNYLKSQGLPVAKIHGGIPPRERKRIMKDIHRLRYQYVVATDLAARGIDIEG 311

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAARN 681
             LV   D   D E F       I  +GR  RN
Sbjct: 312 VSLVINDDIPTDLEFF-------IHRVGRTGRN 337


>gi|262403377|ref|ZP_06079937.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC586]
 gi|262350876|gb|EEZ00010.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC586]
          Length = 464

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVYDE---------INLAAQQGLR-ILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y           + LA +   + +L+ + TK  A 
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLAKEGNWQQVLVFMRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L  YL E+ +    +H       R   + D + G+  +LV  ++   G+DIP+
Sbjct: 258 RLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQ 311


>gi|260948446|ref|XP_002618520.1| eukaryotic initiation factor 4A [Clavispora lusitaniae ATCC 42720]
 gi|238848392|gb|EEQ37856.1| eukaryotic initiation factor 4A [Clavispora lusitaniae ATCC 42720]
          Length = 396

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 7/99 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD I++      + ++   T+   E+L   L   N  V  +H+++   ER  I+ + R
Sbjct: 254 DLYDSISVT-----QAVIFCNTRSKVENLMAKLKANNFTVSAIHADLPQAERDTIMNEFR 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR 666
            G   +L+  +LL  G+D+ +  LV   D  A+KE ++ 
Sbjct: 309 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 347


>gi|224824692|ref|ZP_03697799.1| transcription-repair coupling factor [Lutiella nitroferrum 2002]
 gi|224603185|gb|EEG09361.1| transcription-repair coupling factor [Lutiella nitroferrum 2002]
          Length = 1129

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           + M E L E L E  I V   H +++  E  +++RD    +F++L+   ++  G+DIP  
Sbjct: 812 QNMQEKLAELLPEARIGV--AHGQLRERELEQVMRDFLQQRFNLLLCSTIIETGIDIPNA 869

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
             + I  ADK G       L Q  GR  R+ +     YA  +T       D  TR  +K+
Sbjct: 870 NTILINRADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTP------DGMTRDAQKR 916

Query: 712 LE 713
           LE
Sbjct: 917 LE 918


>gi|197301673|ref|ZP_03166743.1| hypothetical protein RUMLAC_00399 [Ruminococcus lactaris ATCC
           29176]
 gi|197299113|gb|EDY33643.1| hypothetical protein RUMLAC_00399 [Ruminococcus lactaris ATCC
           29176]
          Length = 686

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 10/93 (10%)

Query: 595 AEDLTEY------LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           AE++T+Y      +   +IRV Y+H ++K  E+ EI+      +  VLV   ++  G+D+
Sbjct: 487 AENVTDYSQMLQEILGPSIRVGYLHGKMKEKEKDEIMTAFGRNEIQVLVSTTVVEVGIDV 546

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           P   ++ I +A++ G       L Q  GR  R 
Sbjct: 547 PNATVIMIENAERFGL----AQLHQLRGRVGRG 575


>gi|145589112|ref|YP_001155709.1| transcription-repair coupling factor [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047518|gb|ABP34145.1| transcription-repair coupling factor [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 1180

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 36/184 (19%), Positives = 76/184 (41%), Gaps = 21/184 (11%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           A +L  E   F P   V     +    YD++ P       D   E+ +++ E ++     
Sbjct: 58  AQRLADEIPAFAPQLKVRLLPDWEILPYDHFSPH-----QDLVSERLATLYELLN----- 107

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
                    D ++V   + +  +G  +  S      + GD + +  L   L +  Y    
Sbjct: 108 ------GSCDIVLVPVTTALQRLGPPQFLSGHTFFFRQGDKLNESALRLQLQQAGYDPVS 161

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
             +  G + + G  I++FP    ++ +R+ +FG++IE+I  F P T + +  V+ +++  
Sbjct: 162 AVLRPGEYSIRGGLIDLFPMG-SNLPYRLDLFGDEIEQIRAFDPDTQRSLYPVKEVRLLP 220

Query: 382 NSHY 385
              +
Sbjct: 221 GHEF 224


>gi|326334210|ref|ZP_08200433.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
 gi|325948001|gb|EGD40118.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
          Length = 482

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TKR A+ + + L ER      +H +++   R  +++  R GK +VLV  ++  
Sbjct: 245 KVVVFARTKRQAQRVADDLAERGFPASPLHGDMQQAARERVMQKFRDGKVEVLVATDVAA 304

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVILYAD-----TITKSI 697
            G+D+   G+  +++       ++    I   GRA A  V   ++ +AD      I K++
Sbjct: 305 RGIDV--TGVSHVVNYTTPDDEKTYVHRIGRTGRAGASGVAVTLVDWADLHKWKMINKAL 362

Query: 698 QLAIDE 703
            L  D+
Sbjct: 363 DLPFDD 368


>gi|325300555|ref|YP_004260472.1| type III restriction protein res subunit [Bacteroides salanitronis
           DSM 18170]
 gi|324320108|gb|ADY37999.1| type III restriction protein res subunit [Bacteroides salanitronis
           DSM 18170]
          Length = 790

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           + + R  +E +Y+ +   A  G + ++  ++   A ++ EY     +    + S+    E
Sbjct: 233 VLNKRPSIERLYESVRQYAD-GKKGIIYAISISHARNIAEYYKGHGMNAVAIDSKTPAKE 291

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  ++ D R G   VLV +++  EG D P+   V +          S +  +Q +GR  R
Sbjct: 292 RKRLVEDFRQGGIQVLVNVDVFSEGFDCPDVEFVQLARP-----TLSLSKYLQQVGRGLR 346

Query: 681 NVNSK 685
               K
Sbjct: 347 KTVGK 351


>gi|301785417|ref|XP_002928121.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Ailuropoda melanoleuca]
          Length = 729

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 544 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 603

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 604 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 647


>gi|325676737|ref|ZP_08156410.1| ATP-dependent RNA helicase [Rhodococcus equi ATCC 33707]
 gi|325552285|gb|EGD21974.1| ATP-dependent RNA helicase [Rhodococcus equi ATCC 33707]
          Length = 712

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +A+++G R ++   TK  AE +TE L E+ +    +H      +R  ++   + G+  VL
Sbjct: 283 IASREGGRTIMFARTKLGAEGITERLREKGVAAEALHGGKAQNQRTRVLERFKTGRTPVL 342

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           V  ++   G+ +    LV  +D  ++         +   GR AR   + V+
Sbjct: 343 VATDVAARGIHVDGIDLVVHVDPPQD-----HKDYLHRAGRTARAGEAGVV 388


>gi|253773863|ref|YP_003036694.1| transcription-repair coupling factor [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253324907|gb|ACT29509.1| transcription-repair coupling factor [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
          Length = 1164

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 247 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|257066452|ref|YP_003152708.1| primosomal protein N' [Anaerococcus prevotii DSM 20548]
 gi|256798332|gb|ACV28987.1| primosomal protein N' [Anaerococcus prevotii DSM 20548]
          Length = 790

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 10/107 (9%)

Query: 591 TKRMAEDLTEYLYERNI-RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E++  +    NI R+  M +  K L  + + RD++  K D+L+G  ++ +GLD  
Sbjct: 549 TEKLEEEVRNFFPNANILRMDSMTATNKNLYEM-MYRDMKNNKIDILLGTQMIAKGLDFK 607

Query: 650 ECGLVAILDADKE----GFLRSKTS---LIQTIGRAARN-VNSKVIL 688
              LV I+ AD       F  ++T+   L Q  GRA R+ +  +VI+
Sbjct: 608 NVSLVGIISADLSLNVGDFKANETTFQLLTQVSGRAGRDKIKGRVII 654


>gi|60115445|dbj|BAD90013.1| p68 RNA helicase [Tubifex tubifex]
          Length = 490

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR A DL   +         +H +    ER  ++RD R G+  +LV  ++  
Sbjct: 310 KTMVFVETKRRANDLAYKMKRAGWMAACIHGDKSQEERDSVLRDFRNGRIPILVATDVAA 369

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     +       +  IGR  R
Sbjct: 370 RGLDVDDVKFVVNFD-----YPNCSEDYVHRIGRTGR 401


>gi|50421353|ref|XP_459226.1| DEHA2D17072p [Debaryomyces hansenii CBS767]
 gi|74602368|sp|Q6BRE4|DBP5_DEBHA RecName: Full=ATP-dependent RNA helicase DBP5
 gi|49654893|emb|CAG87398.1| DEHA2D17072p [Debaryomyces hansenii]
          Length = 493

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 3/97 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK  A  L   + +   +   +H+ ++T ER  +I D R G+  VL+  N+L  G
Sbjct: 345 IIFVKTKDTANILYAKMKKEGHKCSILHAGLETSERDRLIDDFREGRSKVLITTNVLARG 404

Query: 646 LDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
           +DI    +V   D   D++G     T L   IGR  R
Sbjct: 405 IDIASVSMVVNYDLPVDQKGAPDPSTYL-HRIGRTGR 440


>gi|15602784|ref|NP_245856.1| hypothetical protein PM0919 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|20139711|sp|Q9CMB4|RECG_PASMU RecName: Full=ATP-dependent DNA helicase recG
 gi|12721238|gb|AAK03003.1| RecG [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 693

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H  +K  E+ +I++  +  + D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 517 HLRIGLVHGRMKPAEKQDIMQAFKQAEIDLLVATTVIEVGVDVPNASLMIIENAERLGL- 575

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITK 695
              + L Q  GR  R   +   V++Y   + K
Sbjct: 576 ---SQLHQLRGRVGRGTTASFCVLMYKPPLGK 604


>gi|332263067|ref|XP_003280577.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Nomascus
           leucogenys]
          Length = 578

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 391 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 450

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 451 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 499

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 500 VLMDLKALLLEAKQKVPP 517


>gi|319778865|ref|YP_004129778.1| ATP-dependent RNA helicase DbpA [Taylorella equigenitalis MCE9]
 gi|317108889|gb|ADU91635.1| ATP-dependent RNA helicase DbpA [Taylorella equigenitalis MCE9]
          Length = 457

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+   E L+ +L E+NI  +++H E++  ER +++         VLV  ++   GLDI  
Sbjct: 250 TRTQCEKLSSFLNEQNISSKFLHGEMEKREREDVLLQFSNKSLSVLVATDVAARGLDIE- 308

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            GL A+L+ +    + +    I  IGR  R+ +  ++ 
Sbjct: 309 -GLDAVLNIELSPNVPTH---IHRIGRTGRHSDRGLVF 342


>gi|296450396|ref|ZP_06892152.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP08]
 gi|296879481|ref|ZP_06903475.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP07]
 gi|296260657|gb|EFH07496.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP08]
 gi|296429627|gb|EFH15480.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP07]
          Length = 497

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 9/102 (8%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK     L   + +    +R +H+++    RI +I+D +  KF+VLV  ++   
Sbjct: 248 VIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKKQKFNVLVSSDVASR 307

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNS 684
           G+ I +  LV   D   DKE +       I  IGR  R  NS
Sbjct: 308 GIHIDDISLVINYDVPQDKENY-------IHRIGRTGRKRNS 342


>gi|256028359|ref|ZP_05442193.1| DNA/RNA helicase [Fusobacterium sp. D11]
          Length = 663

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 11/101 (10%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L  L+ V     A+ L E   E+ I+   + SE    ER E IR L  G+ + +V +++ 
Sbjct: 157 LHCLIFVSKVEEAKILVEKFLEQGIKAIALSSENSDNEREEAIRKLEQGEIEYIVSVDIF 216

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTS---LIQTIGRAAR 680
            EG+DIP C    IL       LR  TS    IQ +GR  R
Sbjct: 217 NEGVDIP-CVNQVIL-------LRPTTSAIVYIQQLGRGLR 249


>gi|227824655|ref|ZP_03989487.1| primosomal protein N [Acidaminococcus sp. D21]
 gi|226905154|gb|EEH91072.1| primosomal protein N [Acidaminococcus sp. D21]
          Length = 798

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R  R G+++VL+G  ++ +G D+P   LV IL AD    L       R    L Q  
Sbjct: 594 KIMRAFRSGEYNVLLGTQMVAKGHDVPNVTLVGILSADSTLNLPDFRSGERCFALLTQAA 653

Query: 676 GRAARN 681
           GRA R 
Sbjct: 654 GRAGRG 659


>gi|195591171|ref|XP_002085316.1| GD12376 [Drosophila simulans]
 gi|194197325|gb|EDX10901.1| GD12376 [Drosophila simulans]
          Length = 592

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +QGL+  +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G   VL+
Sbjct: 362 RQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFREGSIWVLI 421

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+  G+D     LV   D     F  +  S I  IGR  R
Sbjct: 422 CTELMGRGIDFKGVNLVINYD-----FPPTTISYIHRIGRTGR 459


>gi|149732736|ref|XP_001496190.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
           isoform 3 [Equus caballus]
          Length = 691

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 509 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 568

Query: 644 EGLDI 648
            GLDI
Sbjct: 569 RGLDI 573


>gi|47087433|ref|NP_998616.1| eukaryotic translation initiation factor 4A, isoform 2 [Danio
           rerio]
 gi|32766429|gb|AAH55242.1| Eukaryotic translation initiation factor 4A, isoform 2 [Danio
           rerio]
          Length = 280

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 155 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDIIMREFRSGSSRVLITTDLLARGIDVQQ 214

Query: 651 CGLV 654
             LV
Sbjct: 215 VSLV 218


>gi|54294931|ref|YP_127346.1| ATP-dependent DNA helicase RecG [Legionella pneumophila str. Lens]
 gi|53754763|emb|CAH16250.1| ATP-dependent DNA helicase RecG [Legionella pneumophila str. Lens]
          Length = 690

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H  +K  E+   +   + G+ D+LV   ++  G+D+P   L+ I +A++ G    
Sbjct: 516 RVGLVHGRMKAFEKEATMAAFKQGEIDLLVATTVIEVGVDVPNASLMIIENAERLGL--- 572

Query: 668 KTSLIQTIGRAARNVNSK--VILYADTITK 695
            + L Q  GR  R  N    ++LY   +++
Sbjct: 573 -SQLHQLRGRVGRGNNQSHCLLLYQSPLSQ 601


>gi|15827355|ref|NP_301618.1| ATP-dependent RNA helicase [Mycobacterium leprae TN]
 gi|221229833|ref|YP_002503249.1| putative ATP-dependent RNA helicase [Mycobacterium leprae Br4923]
 gi|13092904|emb|CAC30321.1| putative ATP-dependent RNA helicase [Mycobacterium leprae]
 gi|219932940|emb|CAR70906.1| putative ATP-dependent RNA helicase [Mycobacterium leprae Br4923]
          Length = 544

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ +T  L ER   V  +H ++  + R   +   R G  DVLV  ++   G+DI
Sbjct: 294 TKRTAQKVTNELNERGFAVGAVHGDLGQIARENALEAFRTGNVDVLVATDVAARGIDI 351


>gi|6322323|ref|NP_012397.1| Tif2p [Saccharomyces cerevisiae S288c]
 gi|6322912|ref|NP_012985.1| Tif1p [Saccharomyces cerevisiae S288c]
 gi|124218|sp|P10081|IF4A_YEAST RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Stimulator factor I 37 kDa component;
           AltName: Full=Translation initiation factor 1/2;
           AltName: Full=p37
 gi|160395531|sp|A6ZQJ1|IF4A_YEAS7 RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Stimulator factor I 37 kDa component;
           AltName: Full=Translation initiation factor 1/2;
           AltName: Full=p37
 gi|192988258|pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
 gi|192988259|pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
 gi|192988263|pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
 gi|192988264|pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
 gi|4621|emb|CAA31301.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|4623|emb|CAA31302.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|486521|emb|CAA82138.1| TIF1 [Saccharomyces cerevisiae]
 gi|854559|emb|CAA60817.1| translation initiation factor [Saccharomyces cerevisiae]
 gi|1015544|emb|CAA89433.1| TIF2 [Saccharomyces cerevisiae]
 gi|151941599|gb|EDN59962.1| translation initiation factor eIF4A subunit [Saccharomyces
           cerevisiae YJM789]
 gi|151944988|gb|EDN63243.1| translation initiation factor eIF4A subunit [Saccharomyces
           cerevisiae YJM789]
 gi|190409872|gb|EDV13137.1| eukaryotic initiation factor 4A [Saccharomyces cerevisiae RM11-1a]
 gi|259147888|emb|CAY81138.1| Tif1p [Saccharomyces cerevisiae EC1118]
 gi|285812764|tpg|DAA08662.1| TPA: Tif2p [Saccharomyces cerevisiae S288c]
 gi|285813313|tpg|DAA09210.1| TPA: Tif1p [Saccharomyces cerevisiae S288c]
 gi|323304041|gb|EGA57820.1| Tif1p [Saccharomyces cerevisiae FostersB]
 gi|323304434|gb|EGA58205.1| Tif2p [Saccharomyces cerevisiae FostersB]
 gi|323308246|gb|EGA61495.1| Tif1p [Saccharomyces cerevisiae FostersO]
 gi|323332640|gb|EGA74046.1| Tif1p [Saccharomyces cerevisiae AWRI796]
 gi|323332976|gb|EGA74378.1| Tif2p [Saccharomyces cerevisiae AWRI796]
 gi|323336789|gb|EGA78053.1| Tif1p [Saccharomyces cerevisiae Vin13]
 gi|323337041|gb|EGA78297.1| Tif2p [Saccharomyces cerevisiae Vin13]
 gi|323347652|gb|EGA81917.1| Tif1p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323348035|gb|EGA82293.1| Tif2p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323354172|gb|EGA86018.1| Tif1p [Saccharomyces cerevisiae VL3]
 gi|323354391|gb|EGA86230.1| Tif2p [Saccharomyces cerevisiae VL3]
          Length = 395

 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD I++      + ++   T+R  E+LT  L      V  ++S++   ER  I+++ R
Sbjct: 253 DLYDSISVT-----QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR 307

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   +L+  +LL  G+D+ +  LV   D  A+KE ++
Sbjct: 308 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 345


>gi|325000473|ref|ZP_08121585.1| ATP-dependent DNA helicase RecG [Pseudonocardia sp. P1]
          Length = 721

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 597 DLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           D+   + E+   +R+  +H ++   E+  ++R     + DVLV   ++  G+D+P    +
Sbjct: 525 DIAPMITEKLGGLRIGILHGKLPADEKDAVMRAFERAELDVLVATTVIEVGVDVPNATGI 584

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            +LDAD+ G     + L Q  GR  R   + + L
Sbjct: 585 VLLDADRFGL----SQLHQLRGRVGRGSAAGLCL 614


>gi|321258735|ref|XP_003194088.1| ATP-dependent rRNA helicase RRP3 [Cryptococcus gattii WM276]
 gi|317460559|gb|ADV22301.1| ATP-dependent rRNA helicase RRP3 [Cryptococcus gattii WM276]
          Length = 586

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 37/71 (52%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RIL+  L K+ A+ L   +      V  +H ++    R + +   + G+ +VLV  ++  
Sbjct: 422 RILVFALYKKEAQRLEYTIRRAGYAVGALHGDMTQEARFKALEAFKTGQQNVLVATDVAA 481

Query: 644 EGLDIPECGLV 654
            GLDIP+ GLV
Sbjct: 482 RGLDIPDVGLV 492


>gi|315287490|gb|EFU46901.1| transcription-repair coupling factor [Escherichia coli MS 110-3]
          Length = 1164

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 247 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|331234891|ref|XP_003330106.1| ATP-dependent RNA helicase DED1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309309096|gb|EFP85687.1| ATP-dependent RNA helicase DED1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 660

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 5/105 (4%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G   L+ V TKRMA+ L  +L + N     +H +    ER   +   R  +  V+V   +
Sbjct: 438 GGLTLVFVETKRMADMLENFLIQSNFAATSIHGDRSQRERERALETFRSSRTPVMVATAV 497

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              GLDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 498 AARGLDIPNVTHVVNYDLPND-----IDDYVHRIGRTGRAGNTGI 537


>gi|301785421|ref|XP_002928123.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 3
           [Ailuropoda melanoleuca]
          Length = 692

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 510 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 569

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 570 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 613


>gi|301328512|ref|ZP_07221578.1| transcription-repair coupling factor [Escherichia coli MS 78-1]
 gi|307310109|ref|ZP_07589759.1| transcription-repair coupling factor [Escherichia coli W]
 gi|300845119|gb|EFK72879.1| transcription-repair coupling factor [Escherichia coli MS 78-1]
 gi|306909827|gb|EFN40321.1| transcription-repair coupling factor [Escherichia coli W]
 gi|315060391|gb|ADT74718.1| transcription-repair coupling factor [Escherichia coli W]
 gi|323379049|gb|ADX51317.1| transcription-repair coupling factor [Escherichia coli KO11]
 gi|324017516|gb|EGB86735.1| transcription-repair coupling factor [Escherichia coli MS 117-3]
          Length = 1164

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 247 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.7 bits (86), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|297828586|ref|XP_002882175.1| hypothetical protein ARALYDRAFT_477362 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328015|gb|EFH58434.1| hypothetical protein ARALYDRAFT_477362 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 625

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I  + + G ++++   TKRM + LT  L  R      +H +    ER  ++   R G+
Sbjct: 400 EQILRSQEPGSKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGR 458

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             VLV  ++   GLD+ +  + A+++ D   F       +  IGR  R
Sbjct: 459 TPVLVATDVAARGLDVKD--IRAVVNYD---FPNGVEDYVHRIGRTGR 501


>gi|282900305|ref|ZP_06308256.1| Primosomal protein n [Cylindrospermopsis raciborskii CS-505]
 gi|281194810|gb|EFA69756.1| Primosomal protein n [Cylindrospermopsis raciborskii CS-505]
          Length = 884

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 12/81 (14%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFL---------RSKTSLIQTIGRAARN 681
           G+ D+LVG  +L +GLD+P+  LV ++ AD  G L         R+  +L Q  GRA R 
Sbjct: 690 GEADLLVGTQMLTKGLDLPQVTLVGVVAAD--GLLHLSDYRASERAFQTLTQVAGRAGRG 747

Query: 682 VNS-KVILYADTITKSIQLAI 701
             S +VI+   T   ++  A+
Sbjct: 748 EESGRVIIQTYTPEHAVIAAV 768


>gi|226941736|ref|YP_002796810.1| primosome assembly protein PriA [Laribacter hongkongensis HLHK9]
 gi|226716663|gb|ACO75801.1| PriA [Laribacter hongkongensis HLHK9]
          Length = 718

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 143 MQTDYHPS--GDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAI 197
           +QT   P+   +Q AA+A L +   S     LL GVTGSGKT    + IE   A  R A+
Sbjct: 180 LQTGPRPALTPEQDAALAALPE---SGFAPALLFGVTGSGKTELYLRRIEATLAAGRQAL 236

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY-DYYQPEAYV 238
           V+ P   L  QL + F+  FP   +    S+  D  + EA+V
Sbjct: 237 VLVPEINLTPQLEARFRARFPATPMAILTSHQPDRARSEAWV 278


>gi|255656171|ref|ZP_05401580.1| ATP-dependent RNA helicase [Clostridium difficile QCD-23m63]
          Length = 497

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 9/102 (8%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK     L   + +    +R +H+++    RI +I+D +  KF+VLV  ++   
Sbjct: 248 VIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKKQKFNVLVSSDVASR 307

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNS 684
           G+ I +  LV   D   DKE +       I  IGR  R  NS
Sbjct: 308 GIHIDDISLVINYDVPQDKENY-------IHRIGRTGRKRNS 342


>gi|239826563|ref|YP_002949187.1| primosome assembly protein PriA [Geobacillus sp. WCH70]
 gi|239806856|gb|ACS23921.1| primosomal protein N' [Geobacillus sp. WCH70]
          Length = 804

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 15/102 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+++ E+LT+ L E     R +  +V T  R      ++ +   GK D+L+G  ++ +GL
Sbjct: 564 TQKVEEELTKLLPE----ARVIRMDVDTTSRKGAHERLLAEFGAGKADILLGTQMIAKGL 619

Query: 647 DIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           D P+  LV +L AD    L       ++   L Q  GRA R+
Sbjct: 620 DFPKVTLVGVLAADTMLHLPDFRASEKTFQLLTQVSGRAGRH 661



 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 150 SGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQR---PAIVMAPNKIL 205
           + +Q  A++ +++ + + E +V LL GVTGSGKT    + IE + R    AIV+ P   L
Sbjct: 268 TDEQEKALSAIVERVRANEHEVFLLYGVTGSGKTEVYMQAIEEVLRQGKEAIVLVPEISL 327

Query: 206 AAQLYSEFKNFF 217
             Q+   FK  F
Sbjct: 328 TPQMVERFKGRF 339


>gi|148360394|ref|YP_001251601.1| transcription repair coupling factor [Legionella pneumophila str.
           Corby]
 gi|296106539|ref|YP_003618239.1| transcription-repair coupling factor (superfamily II helicase)
           [Legionella pneumophila 2300/99 Alcoy]
 gi|148282167|gb|ABQ56255.1| transcription repair coupling factor [Legionella pneumophila str.
           Corby]
 gi|295648440|gb|ADG24287.1| transcription-repair coupling factor (superfamily II helicase)
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 1153

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R+ +DL   + E  I+  +     + LERI  + D    +F+VLV   ++  G+DIP  
Sbjct: 826 ERVCQDLEALVPEAKIQSAHGQMRERQLERI--MSDFYHHRFNVLVCTTIIETGIDIPTA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             + I  ADK G       L Q  GR  R+ +     YA  +T + +L   +  +R E
Sbjct: 884 NTIIIDRADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPNEKLLTPDAVKRLE 934


>gi|154342955|ref|XP_001567423.1| ATP-dependent RNA helicase-like protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134064755|emb|CAM42860.1| putative RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 584

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +   +++L E +    + +  MH+++   +R E +   RLGK  VLV   LL  
Sbjct: 379 VLVFVQSVERSKELYEEIRAEGLHMAIMHAKMTVEQREETVLQFRLGKIWVLVTTELLAR 438

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G V   D     F  +  S I  +GR  R
Sbjct: 439 GIDFKNVGTVINFD-----FPATVDSYIHRVGRTGR 469


>gi|118587509|ref|ZP_01544933.1| ATP-dependent DNA helicase RecG [Oenococcus oeni ATCC BAA-1163]
 gi|118431960|gb|EAV38702.1| ATP-dependent DNA helicase RecG [Oenococcus oeni ATCC BAA-1163]
          Length = 676

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
            ++  R+ E+L  Y      R+  +H  +   E+ ++I D    +  VLV   ++  G+D
Sbjct: 484 VLIYDRLKEELKPY------RIGLLHGRLTNDEKQQVINDFSTNRVQVLVTTTVIEVGVD 537

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITK 695
           I    ++ ILDAD+ G       L Q  GR  R    S  IL +D  T+
Sbjct: 538 IKNATIMVILDADRFGI----AQLHQLRGRVGRGKKQSYAILVSDPKTQ 582


>gi|314936625|ref|ZP_07843972.1| primosomal protein N' [Staphylococcus hominis subsp. hominis C80]
 gi|313655244|gb|EFS18989.1| primosomal protein N' [Staphylococcus hominis subsp. hominis C80]
          Length = 802

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 8/74 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +++ D   GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 594 KLLTDFENGKGDILLGTQMIAKGLDYPNITLVGVLNADTMLNLPDFRASERTYQLLTQVS 653

Query: 676 GRAARNVNS-KVIL 688
           GRA R+  + KVI+
Sbjct: 654 GRAGRHEKTGKVII 667


>gi|313241312|emb|CBY33588.1| unnamed protein product [Oikopleura dioica]
          Length = 467

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y+ + +      + ++ + T++  E LT+ L  R+  V  MH ++    R +++R+ R
Sbjct: 326 DLYETVTIT-----QCVIFLNTRKKVEWLTQQLNRRDFTVSCMHGDMDQKNREQVMREFR 380

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  +LL  G+D+ +  LV
Sbjct: 381 TGSSRVLITTDLLARGIDVQQVSLV 405


>gi|313889712|ref|ZP_07823355.1| ATP-dependent DNA helicase RecG [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313122009|gb|EFR45105.1| ATP-dependent DNA helicase RecG [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 671

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 5/88 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + ++L  Y ++ + R+  MH ++K  ++  I++  +  + D+LV   ++  G+++P   +
Sbjct: 484 LEQELKNY-FQGDARIALMHGKMKNEDKDAIMQAFKNQEIDLLVSTTVIEVGVNVPNATI 542

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARN 681
           + I+DAD+ G     + L Q  GR  R 
Sbjct: 543 MLIMDADRFGL----SQLHQLRGRVGRG 566


>gi|307609748|emb|CBW99260.1| transcription-repair coupling factor [Legionella pneumophila 130b]
          Length = 1153

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R+ +DL   + E  I+  +     + LERI  + D    +F+VLV   ++  G+DIP  
Sbjct: 826 ERVCQDLEALVPEAKIQSAHGQMRERQLERI--MSDFYHHRFNVLVCTTIIETGIDIPTA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             + I  ADK G       L Q  GR  R+ +     YA  +T + +L   +  +R E
Sbjct: 884 NTIIIDRADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPNEKLLTPDAVKRLE 934


>gi|297807481|ref|XP_002871624.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317461|gb|EFH47883.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 713

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           + G +I++   TKRM + L   L  R      +H +    ER +++   R G+  VLV  
Sbjct: 472 EPGSKIIIFCSTKRMCDQLARNL-TRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVAT 530

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++   GLD+ +  +V   D     F       +  IGR  R
Sbjct: 531 DVAARGLDVKDIRVVVNYD-----FPNGVEDYVHRIGRTGR 566


>gi|282162816|ref|YP_003355201.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
 gi|282155130|dbj|BAI60218.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
          Length = 765

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 11/102 (10%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++EI+   R G+F+ L+  ++  EGLDIP   LV   +      + S+   IQ  GR  
Sbjct: 411 KQVEILDAFRAGEFNTLIATSVAEEGLDIPSTDLVIFYEP-----VPSEIRSIQRRGRTG 465

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN 721
           RN   +VI+     T+      DE T R  +  E      +N
Sbjct: 466 RNAVGRVIVLISKGTR------DEGTYRVSQAKEKKMYRTMN 501


>gi|259047424|ref|ZP_05737825.1| ATP-dependent DNA helicase RecG [Granulicatella adiacens ATCC
           49175]
 gi|259035615|gb|EEW36870.1| ATP-dependent DNA helicase RecG [Granulicatella adiacens ATCC
           49175]
          Length = 683

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           +   ++V  +H ++   E+  ++ D +     VLV   ++  G+D+P   ++ ILDAD+ 
Sbjct: 502 FSDRVKVGLLHGKMPADEKEVVMADFKANNLQVLVSTTVIEVGVDVPNATVMVILDADRF 561

Query: 663 GFLRSKTSLIQTIGRAARNVN-SKVILYADTITKS 696
           G       L Q  GR  R  + S  IL A   T++
Sbjct: 562 GL----AQLHQLRGRVGRGQHASTCILVASPKTEN 592


>gi|258542202|ref|YP_003187635.1| DNA helicase transcription-repair coupling factor [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633280|dbj|BAH99255.1| DNA helicase transcription-repair coupling factor [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636339|dbj|BAI02308.1| DNA helicase transcription-repair coupling factor [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639392|dbj|BAI05354.1| DNA helicase transcription-repair coupling factor [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642448|dbj|BAI08403.1| DNA helicase transcription-repair coupling factor [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645503|dbj|BAI11451.1| DNA helicase transcription-repair coupling factor [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648556|dbj|BAI14497.1| DNA helicase transcription-repair coupling factor [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651609|dbj|BAI17543.1| DNA helicase transcription-repair coupling factor [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654600|dbj|BAI20527.1| DNA helicase transcription-repair coupling factor [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 1158

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 81/204 (39%), Gaps = 18/204 (8%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +++++  + GV        +A+     + P + +A N    A+L        P   V  F
Sbjct: 7   AQKRIATVWGVPEGYDALLLARRARDHKGPVLHIARNDAAMARLNDMLAFVAPDVDVLRF 66

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE----RNDCIVVSSVSCI 281
                        P  D       S N  I   R S    LLE    R   ++ +  + +
Sbjct: 67  -------------PAWDCLPYDRVSPNPAIVAERVSTLTRLLEPAKGRPRLVLATVNAVV 113

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +++    + ++ G+S++Q  L+  L+   Y R D  +  G F   G   +++P+
Sbjct: 114 QRVAPRKTFEGQSLSIRTGESLDQGFLIELLIANGYTRTDTVMEAGEFATRGGIFDLYPA 173

Query: 342 HLEDVAWRVSMFGNDIEEISEFYP 365
              +   R+ +FG+++E I  F P
Sbjct: 174 GAGE-PLRLDLFGDEVENIRAFDP 196


>gi|254882908|ref|ZP_05255618.1| primosomal protein N [Bacteroides sp. 4_3_47FAA]
 gi|319639712|ref|ZP_07994445.1| primosomal protein N [Bacteroides sp. 3_1_40A]
 gi|254835701|gb|EET16010.1| primosomal protein N [Bacteroides sp. 4_3_47FAA]
 gi|317388676|gb|EFV69522.1| primosomal protein N [Bacteroides sp. 3_1_40A]
          Length = 820

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  
Sbjct: 614 KIIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNFPDFRSYERAFQLMAQVA 673

Query: 676 GRAAR-NVNSKVIL 688
           GRA R N    VIL
Sbjct: 674 GRAGRKNKQGLVIL 687


>gi|300767263|ref|ZP_07077175.1| DNA helicase RecG [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308180477|ref|YP_003924605.1| DNA helicase RecG [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|300495082|gb|EFK30238.1| DNA helicase RecG [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308045968|gb|ADN98511.1| DNA helicase RecG [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 679

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 6/99 (6%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++ +L EY +  +++V  +H  +K  E+  ++   + G   +LV   ++  G+D+    +
Sbjct: 488 LSANLQEY-FGASVKVGLLHGRMKPEEKDAVMAAFKAGDIQLLVSTTVIEVGVDVKNATI 546

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYAD 691
           + I DAD+ G  +    L Q  GR  R    S  IL AD
Sbjct: 547 MMIYDADRFGLAQ----LHQLRGRVGRGTKASYCILVAD 581


>gi|156406955|ref|XP_001641310.1| predicted protein [Nematostella vectensis]
 gi|156228448|gb|EDO49247.1| predicted protein [Nematostella vectensis]
          Length = 487

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   +D+ EYL  + +    +H +    ER+  IR+   G  DVLV  ++  +
Sbjct: 301 VLIFAEKKSDVDDIHEYLLLKGVEAVAIHGDKSQEERVHAIREFHQGNKDVLVATDVASK 360

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKV 686
           GLD P+   V   D   D E +       +  IGR  R   + V
Sbjct: 361 GLDFPDIQHVINFDMPEDIENY-------VHRIGRTGRCGKTGV 397


>gi|149192401|ref|ZP_01870601.1| transcription-repair coupling factor [Vibrio shilonii AK1]
 gi|148833766|gb|EDL50803.1| transcription-repair coupling factor [Vibrio shilonii AK1]
          Length = 331

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 46/237 (19%), Positives = 94/237 (39%), Gaps = 24/237 (10%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           + L  + G      +++         +++ P+  LA +L  E + FFP     +      
Sbjct: 19  KFLGNLIGGALALAISEHANTYNDHTLLVVPDPQLALKLQGELEQFFPGEIALF------ 72

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
              P+      D +   +  I+++I R+      +L +++  I +  VS +    S   +
Sbjct: 73  ---PDWETLPYDNFSPHQDIISDRIARLY-----ALPQQSKGITIVPVSTLLQRQSPRDF 124

Query: 291 -SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
             Q  + +K GD     +L   L    Y+  D     G +   G  +++FP       +R
Sbjct: 125 LMQHTLMVKTGDLFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMG-SSAPYR 183

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
           +  F ++I+ I  F P   + I ++  I++     +    PT   A+    EE ++R
Sbjct: 184 IDFFDDEIDTIRTFDPENQRSIEDISEIRLLPAHEF----PTTKDAI----EEFRVR 232


>gi|68037499|gb|AAY84883.1| DEAD-box ATPase-RNA-helicase [Triticum aestivum]
          Length = 381

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D+I    + G ++++   TKRM + L+  L  R      +H +    ER  ++ + R G+
Sbjct: 128 DQILRQQEPGSKVIIFCSTKRMCDQLSRNL-SRQYGASAIHGDKSQAERDSVLSEFRTGR 186

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +LV  ++   GLD+ +  +V   D     F       +  IGR  R
Sbjct: 187 CPILVATDVAARGLDVKDIRVVVNYD-----FPTGVEDYVHRIGRTGR 229


>gi|84468310|dbj|BAE71238.1| hypothetical protein [Trifolium pratense]
          Length = 402

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +G + ++   TKR A++++ Y    +I  + +H ++   +R   +   R G+F VLV
Sbjct: 128 AYGKGGKTIVFTRTKRDADEIS-YSLTSSIASKALHGDISQYQRERTLDGFRQGRFTVLV 186

Query: 638 GINLLREGLDIPECGLV 654
             ++   GLDIP   L+
Sbjct: 187 ATDVASRGLDIPNVDLI 203


>gi|54293927|ref|YP_126342.1| transcription-repair coupling factor [Legionella pneumophila str.
           Lens]
 gi|53753759|emb|CAH15217.1| Transcription-repair coupling factor [Legionella pneumophila str.
           Lens]
          Length = 1153

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R+ +DL   + E  I+  +     + LERI  + D    +F+VLV   ++  G+DIP  
Sbjct: 826 ERVCQDLEALVPEAKIQSAHGQMRERQLERI--MSDFYHHRFNVLVCTTIIETGIDIPTA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             + I  ADK G       L Q  GR  R+ +     YA  +T + +L   +  +R E
Sbjct: 884 NTIIIDRADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPNEKLLTPDAVKRLE 934


>gi|146293254|ref|YP_001183678.1| transcription-repair coupling factor [Shewanella putrefaciens
           CN-32]
 gi|145564944|gb|ABP75879.1| transcription-repair coupling factor [Shewanella putrefaciens
           CN-32]
          Length = 1162

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 48/237 (20%), Positives = 102/237 (43%), Gaps = 33/237 (13%)

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           +++ P  D   ++  +++ QI +  HS           ++V   + +  +      S  +
Sbjct: 84  DSFSPHQDLISQRLETLS-QISQTEHS----------VVIVPVTTLMMRLPPKAYLSANV 132

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             LK GD  +   +   L    Y   +     G F + G  ++IFP+ + ++  R+ +F 
Sbjct: 133 FVLKKGDRYQLHNVRQHLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGV-NMPLRIELFD 191

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           +++E I  F P T + +  VE+I++     +    PT + A++  ++  + R   + K  
Sbjct: 192 DEVETIRHFDPETQRSLHPVESIRLLPAKEF----PTDSAAIEGFRQRYRRRFEVIVK-- 245

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
              E + + Q ++ +L           IENY          +   TLF+Y+P+++ L
Sbjct: 246 ---EPESVYQLVSRNL-------MPAGIENYLPLFF-----DEVATLFDYLPKETQL 287


>gi|71898665|ref|ZP_00680835.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|71731612|gb|EAO33673.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
          Length = 609

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 4/121 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R +    ++ +++  +R   I  L+ GK D+LV  ++   
Sbjct: 251 MIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+     V  L+ D    + S    I   GRA R  + + IL+     K +   I+  
Sbjct: 311 GLDVERISHV--LNYDIPYDVESYVHRIGRTGRAGR--SGEAILFVTPREKGMLRQIERA 366

Query: 705 T 705
           T
Sbjct: 367 T 367


>gi|332233581|ref|XP_003265982.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Nomascus leucogenys]
          Length = 693

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 511 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 570

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 571 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 614


>gi|307822340|ref|ZP_07652572.1| transcription-repair coupling factor [Methylobacter tundripaludum
           SV96]
 gi|307736906|gb|EFO07751.1| transcription-repair coupling factor [Methylobacter tundripaludum
           SV96]
          Length = 1155

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 47/242 (19%), Positives = 97/242 (40%), Gaps = 40/242 (16%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH-----NAVEYFVSYY 229
           G+TG G +  +A  I+   R  +++  +   A +L  E   F        N  ++    Y
Sbjct: 23  GLTGCGDSLALASAIKNEDRLFVMITRDNQTALRLEHELSFFLQGEHPILNFPDWETLPY 82

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
           D + P   +P   +   K  ++  Q+ R               +VVS  + ++ +   E 
Sbjct: 83  DVFSP---LPEIISERLKTLALLPQVKR-------------GALVVSVTTLMHRLAPREH 126

Query: 290 YSQMIVQLKIGDS-------VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
                  +K+GD        ++ + +    V Q Y+        G F V G  +++FP  
Sbjct: 127 VLANSFAVKVGDDFNLELNRIKLESVGYHCVSQVYQ-------HGEFAVRGSIVDLFPMG 179

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
                +R+ +F  +IE I  F P T + +  ++ I+++    +    P  + A+K+ ++ 
Sbjct: 180 -SKAPYRIELFDEEIESIRTFDPETQRSLEKIDRIQLFPAREF----PFTDEAIKHFRQA 234

Query: 403 LK 404
            +
Sbjct: 235 FR 236


>gi|293414407|ref|ZP_06657056.1| transcription-repair coupling factor [Escherichia coli B185]
 gi|291434465|gb|EFF07438.1| transcription-repair coupling factor [Escherichia coli B185]
          Length = 1148

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|289766285|ref|ZP_06525663.1| DNA/RNA helicase [Fusobacterium sp. D11]
 gi|289717840|gb|EFD81852.1| DNA/RNA helicase [Fusobacterium sp. D11]
          Length = 660

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 11/101 (10%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L  L+ V     A+ L E   E+ I+   + SE    ER E IR L  G+ + +V +++ 
Sbjct: 154 LHCLIFVSKVEEAKILVEKFLEQGIKAIALSSENSDNEREEAIRKLEQGEIEYIVSVDIF 213

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTS---LIQTIGRAAR 680
            EG+DIP C    IL       LR  TS    IQ +GR  R
Sbjct: 214 NEGVDIP-CVNQVIL-------LRPTTSAIVYIQQLGRGLR 246


>gi|257054731|ref|YP_003132563.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
 gi|256584603|gb|ACU95736.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
          Length = 559

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL ++ T  TKR A+ + + L ER      +H ++    R + +R  R GK D+LV
Sbjct: 261 AEGRGLTMIFT-RTKRTAQKVADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDILV 319

Query: 638 GINLLREGLDI 648
             ++   G+D+
Sbjct: 320 ATDVAARGIDV 330


>gi|238879720|gb|EEQ43358.1| hypothetical protein CAWG_01593 [Candida albicans WO-1]
          Length = 562

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TKR  +++T YL         +H + +  ER  ++ + R GK  ++V  ++  
Sbjct: 377 KILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAA 436

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+D+   G+  +++ D  G +      +  IGR  R   S   +
Sbjct: 437 RGIDVK--GITHVINYDMPGNIE---DYVHRIGRTGRGGASGTAI 476


>gi|241737496|ref|XP_002414033.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215507887|gb|EEC17341.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 402

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + L+E + E N  V  MH ++   ER  I+++ R
Sbjct: 261 DLYDTLTIT-----QAVIFCNTKRKVDWLSEKMREANFTVSSMHGDMPQKERDAIMKEFR 315

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 316 SGSSRVLITTDIWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 361


>gi|176865998|ref|NP_001116509.1| eukaryotic initiation factor 4A-II isoform b [Mus musculus]
          Length = 312

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 187 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 246

Query: 651 CGLV 654
             LV
Sbjct: 247 VSLV 250


>gi|157820683|ref|NP_001101516.1| probable ATP-dependent RNA helicase DDX41 [Rattus norvegicus]
 gi|149039854|gb|EDL93970.1| rCG24134 [Rattus norvegicus]
 gi|187469705|gb|AAI66825.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Rattus norvegicus]
          Length = 622

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 495 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 543

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 544 VLMDLKALLLEAKQKVPP 561


>gi|91206539|sp|Q59LU0|DBP2_CANAL RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 562

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TKR  +++T YL         +H + +  ER  ++ + R GK  ++V  ++  
Sbjct: 376 KILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAA 435

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+D+   G+  +++ D  G +      +  IGR  R   S   +
Sbjct: 436 RGIDVK--GITHVINYDMPGNIE---DYVHRIGRTGRGGASGTAI 475


>gi|52841189|ref|YP_094988.1| transcription repair coupling factor [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628300|gb|AAU27041.1| transcription repair coupling factor [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 1153

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R+ +DL   + E  I+  +     + LERI  + D    +F+VLV   ++  G+DIP  
Sbjct: 826 ERVCQDLEALVPEAKIQSAHGQMRERQLERI--MSDFYHHRFNVLVCTTIIETGIDIPTA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             + I  ADK G       L Q  GR  R+ +     YA  +T + +L   +  +R E
Sbjct: 884 NTIIIDRADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPNEKLLTPDAVKRLE 934


>gi|30062647|ref|NP_836818.1| transcription-repair coupling factor [Shigella flexneri 2a str.
           2457T]
 gi|30040893|gb|AAP16624.1| transcription-repair coupling factor [Shigella flexneri 2a str.
           2457T]
 gi|313650430|gb|EFS14837.1| transcription-repair coupling factor [Shigella flexneri 2a str.
           2457T]
 gi|332758277|gb|EGJ88600.1| transcription-repair coupling factor [Shigella flexneri 4343-70]
 gi|332759433|gb|EGJ89741.1| transcription-repair coupling factor [Shigella flexneri 2747-71]
 gi|332761054|gb|EGJ91341.1| transcription-repair coupling factor [Shigella flexneri K-671]
 gi|332767336|gb|EGJ97530.1| transcription-repair coupling factor [Shigella flexneri 2930-71]
 gi|333005518|gb|EGK25036.1| transcription-repair coupling factor [Shigella flexneri K-218]
 gi|333019350|gb|EGK38633.1| transcription-repair coupling factor [Shigella flexneri K-304]
          Length = 1148

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS----ATRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGILIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|88797925|ref|ZP_01113512.1| probable ATP-dependent RNA helicase [Reinekea sp. MED297]
 gi|88779122|gb|EAR10310.1| probable ATP-dependent RNA helicase [Reinekea sp. MED297]
          Length = 448

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+  AE+L   L     RV  +H E++  ER  I+   R G  DV+V  +L   GLD+  
Sbjct: 251 TRVQAEELANNLRLHQKRVATLHGEIEQDERNRIMTRFRDGVVDVIVATDLAARGLDVEG 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D  + G        +  +GR  R
Sbjct: 311 VDLVVNFDIAQSG-----DEHVHRVGRTGR 335


>gi|86140950|ref|ZP_01059509.1| transcription-repair coupling factor [Leeuwenhoekiella blandensis
           MED217]
 gi|85832892|gb|EAQ51341.1| transcription-repair coupling factor [Leeuwenhoekiella blandensis
           MED217]
          Length = 1127

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 13/154 (8%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLT----VLTKRMAEDLTEYLYERNIRVRYMH 613
           P+E    R   E + D I+   Q+G ++          K +A  +   + +  + + +  
Sbjct: 743 PIETHIIRLSEETIRDAISYEIQRGGQVFFIHNRLQNIKEVAGMIQRLVPDAKVAIGHGQ 802

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            + K LE  E++     G FDVLV   ++  GLD+P    + I +A+  G     + L Q
Sbjct: 803 MDGKKLE--ELMLQFMDGAFDVLVSTTIIESGLDVPNANTIFINNANNFGL----SDLHQ 856

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
             GR  R+ N K   Y   IT  +    D+  +R
Sbjct: 857 MRGRVGRS-NKKAFCYF--ITPPLSAMTDDARKR 887



 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 46/228 (20%), Positives = 97/228 (42%), Gaps = 14/228 (6%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF-VSYYDY 231
           L G+ GS  +  +A+  +   +P +V+  +K  A  + ++ +     + V ++  SY   
Sbjct: 32  LDGLIGSSLSIAIAESFKTADKPFLVILNDKEEATYILNDLEQLVKEDHVLFYPGSYRRP 91

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           YQ E      +  I   + +  +I+  +  A          I+    +    + + +   
Sbjct: 92  YQIEG---TDNANILLRAEVLNRINSRKKPA---------LIITYPDALFEKVVTRKELD 139

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           +  +++KI D++    +   L + ++KR D     G F V G  I++F S   D  +R+ 
Sbjct: 140 KSTLKVKINDNLSLDFVNEMLFEYKFKRVDFVTEPGEFSVRGGIIDVF-SFSHDQPYRIE 198

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
            FG++++ I  F   T   +  +  I +  N      + T  + +KYI
Sbjct: 199 FFGDEVDSIRTFDVETQLSVDKINKISLMPNVENKALQETRESFLKYI 246


>gi|312213955|emb|CBX93957.1| similar to dicer-like protein 1 [Leptosphaeria maculans]
          Length = 1588

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +I  +   R G+ + +   ++  EGLDIP+C LV   D       R+    +Q+ GR AR
Sbjct: 516 QILAVSSFRRGELNCIFATSVAEEGLDIPQCNLVVRFD-----LYRTMIGYVQSRGR-AR 569

Query: 681 NVNSKVI 687
           + NSK +
Sbjct: 570 HTNSKYL 576


>gi|253583420|ref|ZP_04860618.1| ATP-dependent DNA helicase [Fusobacterium varium ATCC 27725]
 gi|251833992|gb|EES62555.1| ATP-dependent DNA helicase [Fusobacterium varium ATCC 27725]
          Length = 686

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 6/91 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+ + E++++YL E  I V  +H  +K  ++ EI+   +  + D++V   ++  G+D+P 
Sbjct: 499 TEELLEEVSKYLPEYRIGV--LHGRMKNADKDEIMNSFKNKELDIMVSTTVIEVGVDVPN 556

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             ++ I +A++ G     ++L Q  GR  R 
Sbjct: 557 ATVMVINNAERFGL----SALHQLRGRVGRG 583


>gi|218192669|gb|EEC75096.1| hypothetical protein OsI_11255 [Oryza sativa Indica Group]
          Length = 1023

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   +++   L +R  R+  +H +     R+E ++  + G + VLV  ++   
Sbjct: 479 VLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVATDVAAR 538

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           GLDI     V   D  KE  +      I  IGR  R  +     Y     K ++ A
Sbjct: 539 GLDIKSIKTVVNFDIAKEMDMH-----IHRIGRTGRAGDKDGTAYTLITQKEVRFA 589


>gi|182680762|ref|YP_001828922.1| DEAD/DEAH box helicase domain-containing protein [Xylella
           fastidiosa M23]
 gi|182630872|gb|ACB91648.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
 gi|307579229|gb|ADN63198.1| DEAD/DEAH box helicase domain-containing protein [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 609

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 4/121 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R +    ++ +++  +R   I  L+ GK D+LV  ++   
Sbjct: 251 MIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+     V  L+ D    + S    I   GRA R  + + IL+     K +   I+  
Sbjct: 311 GLDVERISHV--LNYDIPYDVESYVHRIGRTGRAGR--SGEAILFVTPREKGMLRQIERA 366

Query: 705 T 705
           T
Sbjct: 367 T 367


>gi|125555969|gb|EAZ01575.1| hypothetical protein OsI_23609 [Oryza sativa Indica Group]
          Length = 442

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 6/105 (5%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           N   QQ L  L+ V TKR A+ L  +LY +      +H +    ER   +R  + G   +
Sbjct: 195 NSKLQQPL-TLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPI 253

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +V  ++   GLD+P    V   D  K     S    +  IGR  R
Sbjct: 254 MVATDVASRGLDVPNVAHVINYDLPK-----SVEDYVHRIGRTGR 293


>gi|117623299|ref|YP_852212.1| transcription-repair coupling factor [Escherichia coli APEC O1]
 gi|115512423|gb|ABJ00498.1| transcription-repair coupling factor; mutation frequency decline
           [Escherichia coli APEC O1]
          Length = 1164

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 247 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|76781331|gb|ABA54551.1| vasa-like protein [Monopterus albus]
          Length = 618

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TKR A+ +  +L +  +    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 446 RTMVFAETKRQADFIALFLCQEKVPTTSIHGDREQPEREKALADFRSGKCLVLVATSVAA 505

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDIP+   V   D        +    +  IGR  R  N
Sbjct: 506 RGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGN 540


>gi|28378326|ref|NP_785218.1| ATP-dependent DNA helicase RecG [Lactobacillus plantarum WCFS1]
 gi|254556534|ref|YP_003062951.1| ATP-dependent DNA helicase RecG [Lactobacillus plantarum JDM1]
 gi|28271161|emb|CAD64066.1| ATP-dependent DNA helicase RecG [Lactobacillus plantarum WCFS1]
 gi|254045461|gb|ACT62254.1| ATP-dependent DNA helicase RecG [Lactobacillus plantarum JDM1]
          Length = 679

 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 6/99 (6%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           ++ +L EY +  +++V  +H  +K  E+  ++   + G   +LV   ++  G+D+    +
Sbjct: 488 LSANLQEY-FGASVKVGLLHGRMKPEEKDAVMAAFKAGDIQLLVSTTVIEVGVDVKNATI 546

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYAD 691
           + I DAD+ G  +    L Q  GR  R    S  IL AD
Sbjct: 547 MMIYDADRFGLAQ----LHQLRGRVGRGTKASYCILVAD 581


>gi|323953199|gb|EGB49065.1| transcription-repair coupling protein [Escherichia coli H252]
          Length = 1148

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|301785419|ref|XP_002928122.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Ailuropoda melanoleuca]
          Length = 706

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 524 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 583

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 584 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 627


>gi|300816816|ref|ZP_07097036.1| transcription-repair coupling factor [Escherichia coli MS 107-1]
 gi|300902508|ref|ZP_07120488.1| transcription-repair coupling factor [Escherichia coli MS 84-1]
 gi|301305647|ref|ZP_07211736.1| transcription-repair coupling factor [Escherichia coli MS 124-1]
 gi|309796542|ref|ZP_07690949.1| transcription-repair coupling factor [Escherichia coli MS 145-7]
 gi|300405409|gb|EFJ88947.1| transcription-repair coupling factor [Escherichia coli MS 84-1]
 gi|300530590|gb|EFK51652.1| transcription-repair coupling factor [Escherichia coli MS 107-1]
 gi|300839075|gb|EFK66835.1| transcription-repair coupling factor [Escherichia coli MS 124-1]
 gi|308119854|gb|EFO57116.1| transcription-repair coupling factor [Escherichia coli MS 145-7]
 gi|315253014|gb|EFU32982.1| transcription-repair coupling factor [Escherichia coli MS 85-1]
          Length = 1164

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 247 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.4 bits (85), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|297676837|ref|XP_002816330.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Pongo
           abelii]
          Length = 621

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 434 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 493

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 494 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 542

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 543 VLMDLKALLLEAKQKVPP 560


>gi|300948704|ref|ZP_07162781.1| transcription-repair coupling factor [Escherichia coli MS 116-1]
 gi|300956220|ref|ZP_07168532.1| transcription-repair coupling factor [Escherichia coli MS 175-1]
 gi|301644530|ref|ZP_07244523.1| transcription-repair coupling factor [Escherichia coli MS 146-1]
 gi|331641657|ref|ZP_08342792.1| transcription-repair coupling factor [Escherichia coli H736]
 gi|260449747|gb|ACX40169.1| transcription-repair coupling factor [Escherichia coli DH1]
 gi|300316948|gb|EFJ66732.1| transcription-repair coupling factor [Escherichia coli MS 175-1]
 gi|300451798|gb|EFK15418.1| transcription-repair coupling factor [Escherichia coli MS 116-1]
 gi|301077112|gb|EFK91918.1| transcription-repair coupling factor [Escherichia coli MS 146-1]
 gi|331038455|gb|EGI10675.1| transcription-repair coupling factor [Escherichia coli H736]
          Length = 1164

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 247 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|255973920|ref|ZP_05424506.1| helicase [Enterococcus faecalis T2]
 gi|255966792|gb|EET97414.1| helicase [Enterococcus faecalis T2]
          Length = 515

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  +   +H ++   +R+ ++R  + G  D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|229823426|ref|ZP_04449495.1| hypothetical protein GCWU000282_00724 [Catonella morbi ATCC 51271]
 gi|229787201|gb|EEP23315.1| hypothetical protein GCWU000282_00724 [Catonella morbi ATCC 51271]
          Length = 482

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R + +  LR G+ D+LV   +L  G+ +P C  V IL AD E  L ++ SL+Q  GR  
Sbjct: 382 KRQDKVMALRQGELDLLVTTTILERGVTLPHCQ-VCILGADDE--LYTRASLMQMSGRVG 438

Query: 680 RNVN 683
           R+ +
Sbjct: 439 RSAD 442


>gi|226307581|ref|YP_002767541.1| ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis PR4]
 gi|229493790|ref|ZP_04387568.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
 gi|226186698|dbj|BAH34802.1| probable ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis
           PR4]
 gi|229319289|gb|EEN85132.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
          Length = 591

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 8/145 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  EDL E L  R      ++ ++   +R   I  L+ G  D+LV  ++   
Sbjct: 253 MIIFVRTKQATEDLAEKLRARGHSAAAINGDIVQAQRERTIGQLKNGALDILVATDVAAR 312

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  ++  +L+     + +  +I+
Sbjct: 313 GLDVDRISHVVNYDIPHDTESYVHR----IGRTGRAGRQGDA--LLFVAPRERHLLKSIE 366

Query: 703 ETTRRREKQLEHNKKHNINPQSVKE 727
           + TR+   +++     ++N Q V +
Sbjct: 367 KATRQPLAEMQLPSVDDVNAQRVAK 391


>gi|150004036|ref|YP_001298780.1| putative primosomal protein N' [Bacteroides vulgatus ATCC 8482]
 gi|294778074|ref|ZP_06743508.1| primosomal protein N' [Bacteroides vulgatus PC510]
 gi|149932460|gb|ABR39158.1| putative primosomal protein N' [Bacteroides vulgatus ATCC 8482]
 gi|294448132|gb|EFG16698.1| primosomal protein N' [Bacteroides vulgatus PC510]
          Length = 820

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  
Sbjct: 614 KIIADFEQGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNFPDFRSYERAFQLMAQVA 673

Query: 676 GRAAR-NVNSKVIL 688
           GRA R N    VIL
Sbjct: 674 GRAGRKNKQGLVIL 687


>gi|153854681|ref|ZP_01995931.1| hypothetical protein DORLON_01929 [Dorea longicatena DSM 13814]
 gi|149752785|gb|EDM62716.1| hypothetical protein DORLON_01929 [Dorea longicatena DSM 13814]
          Length = 1126

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++ V Y H +++  E   I+ D   G+ DVLV   ++  GLDI     + I DAD+ G  
Sbjct: 799 DLTVAYAHGQMREHELERIMYDFINGEIDVLVSTTIIETGLDISNANTMIIHDADRLGL- 857

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 858 ---SQLYQLRGRVGRS 870


>gi|148827157|ref|YP_001291910.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae PittGG]
 gi|148718399|gb|ABQ99526.1| ATP-dependent DNA helicase [Haemophilus influenzae PittGG]
          Length = 693

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+ L   NI +  +H  +K  E+ +++   +  + D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLTKALPMLNIGL--VHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           I +A++ G     + L Q  GR  R   +   V++Y   + K  Q
Sbjct: 567 IENAERLGL----SQLHQLRGRVGRGCTASFCVLMYKPPLGKVSQ 607


>gi|121605306|ref|YP_982635.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120594275|gb|ABM37714.1| DEAD/DEAH box helicase domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 417

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+ V TK  AE + + L + +I     H E+   +R ++++D +     V+V  ++  
Sbjct: 251 RVLVFVATKHAAEIVADKLRKADIEAEPFHGELSQGKRNQVLQDFKAKLLQVVVATDVAA 310

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +  +V   D       RS    I  IGR  R
Sbjct: 311 RGIDIAQLPVVVNYD-----LPRSSVDYIHRIGRTGR 342


>gi|118602908|ref|YP_904123.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567847|gb|ABL02652.1| ATP-dependent RNA helicase CsdA [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 606

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 70/153 (45%), Gaps = 7/153 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK +  +L E L  R      ++ +++  +R  II + + GK D+L+  ++   
Sbjct: 255 MIIFVRTKTLTTELAEKLSARGFSAEAINGDIQQNQRERIITNYKKGKIDILIATDVAAR 314

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+     V   D  ++    S    I   GRA R  ++  IL+     + +   I+  
Sbjct: 315 GLDVERISHVVNYDIPQDA--ESYVHRIGRTGRAGRKGDA--ILFVSNRERRMLNTIEHI 370

Query: 705 TRRREKQLEHNKKHNINPQSV---KEKIMEVID 734
           TR++   +E      IN + +   K+ I + I+
Sbjct: 371 TRQKITPIELPSAKIINAKRIETFKQNIAQTIN 403


>gi|114603670|ref|XP_001144645.1| PREDICTED: DEAD-box protein abstrakt isoform 1 [Pan troglodytes]
          Length = 606

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 419 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 478

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 479 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 527

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 528 VLMDLKALLLEAKQKVPP 545


>gi|94495555|ref|ZP_01302135.1| transcription-repair coupling factor [Sphingomonas sp. SKA58]
 gi|94424943|gb|EAT09964.1| transcription-repair coupling factor [Sphingomonas sp. SKA58]
          Length = 1169

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 1/92 (1%)

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q++ +L   + +  + L   L    Y R D    RG F + G  +++FP   ED   R+ 
Sbjct: 141 QLVAKLAPKERIAIQRLADMLQANGYVRTDTVHDRGEFAIRGGIVDLFPGG-EDQPLRLD 199

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
            FG++IE +  F P   +   +VE   +   S
Sbjct: 200 FFGDEIETVRRFDPADQRTTGSVEGFTLLPAS 231


>gi|319638036|ref|ZP_07992800.1| transcription-repair coupling factor [Neisseria mucosa C102]
 gi|317400681|gb|EFV81338.1| transcription-repair coupling factor [Neisseria mucosa C102]
          Length = 1134

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 87/208 (41%), Gaps = 17/208 (8%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  +   A +L + +  F PH+    F+  ++    E + P  D   E+ S++ +   
Sbjct: 37  VVLTQDAEQALRLQTAWLFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ--- 92

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            ++  A        D + V   + +  +  V   +     LK G +++   L + LV   
Sbjct: 93  -IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAG 144

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  
Sbjct: 145 YNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVSE 203

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELK 404
           I++     +    PT + A K  +   +
Sbjct: 204 IRLLPAHEF----PTDSEAQKIFRSRFR 227



 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 825 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 881

Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
              L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 882 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 917


>gi|316974223|gb|EFV57735.1| putative ribosomal protein S7e [Trichinella spiralis]
          Length = 2029

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E++++ R GK ++L   ++L EG+D+  C  V   D        +  S +Q+ GRA + +
Sbjct: 793 EVLKNFRHGKLNLLAATSILEEGIDVRHCNYVIRFDTP-----LTFRSFVQSKGRARQKI 847

Query: 683 NSKVILYADTITKSIQ 698
               IL  D   +S Q
Sbjct: 848 AYYTILVQDRFLESFQ 863


>gi|195124341|ref|XP_002006652.1| GI18468 [Drosophila mojavensis]
 gi|193911720|gb|EDW10587.1| GI18468 [Drosophila mojavensis]
          Length = 1373

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+++I+ D R G  +VLV  ++  EGLD+ E  L+   D        + T  +Q IGR  
Sbjct: 480 EQLQIMSDFRQGVSNVLVATSIGEEGLDVGEVELIVCFDICSS----NPTRFVQRIGRTG 535

Query: 680 RNVNSKVIL 688
           R     V++
Sbjct: 536 RQKKGDVVM 544


>gi|115471073|ref|NP_001059135.1| Os07g0202100 [Oryza sativa Japonica Group]
 gi|75325411|sp|Q6Z4K6|RH52B_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52B; AltName:
           Full=OsPL10b
 gi|34393986|dbj|BAC83834.1| putative DEAD-box RNA helicase DEAD3 [Oryza sativa Japonica Group]
 gi|113610671|dbj|BAF21049.1| Os07g0202100 [Oryza sativa Japonica Group]
 gi|222636630|gb|EEE66762.1| hypothetical protein OsJ_23477 [Oryza sativa Japonica Group]
          Length = 638

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L  +LY        +H +    ER   +R  + G   +LV  ++   G
Sbjct: 432 LVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREYALRSFKSGATPILVATDVAARG 491

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R   S +
Sbjct: 492 LDIPHVAHVINFDLPND-----IDDYVHRIGRTGRAGKSGL 527


>gi|163848628|ref|YP_001636672.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526563|ref|YP_002571034.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163669917|gb|ABY36283.1| DEAD/DEAH box helicase domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450442|gb|ACM54708.1| DEAD/DEAH box helicase domain protein [Chloroflexus sp. Y-400-fl]
          Length = 552

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++ A+D+ E L  R      +H ++    R  ++R  R G+ DVLV  ++   GLDI E
Sbjct: 248 TRQEADDIGERLQGRGYAAESLHGDLSQAARDRVMRRFREGQLDVLVATDVAARGLDIAE 307

Query: 651 CGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
              V   D   D E ++      I   GRA R
Sbjct: 308 VSHVINYDVPTDPESYVHR----IGRTGRAGR 335


>gi|116490527|ref|YP_810071.1| ATP-dependent DNA helicase RecG [Oenococcus oeni PSU-1]
 gi|116091252|gb|ABJ56406.1| ATP-dependent DNA helicase RecG [Oenococcus oeni PSU-1]
          Length = 676

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
            ++  R+ E+L  Y      R+  +H  +   E+ ++I D    +  VLV   ++  G+D
Sbjct: 484 VLIYDRLKEELKPY------RIGLLHGRLTNDEKQQVINDFSTNRVQVLVTTTVIEVGVD 537

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITK 695
           I    ++ ILDAD+ G       L Q  GR  R    S  IL +D  T+
Sbjct: 538 IKNATIMVILDADRFGI----AQLHQLRGRVGRGKKQSYAILVSDPKTQ 582


>gi|331646372|ref|ZP_08347475.1| transcription-repair coupling factor [Escherichia coli M605]
 gi|331045124|gb|EGI17251.1| transcription-repair coupling factor [Escherichia coli M605]
          Length = 1164

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 247 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|322700629|gb|EFY92383.1| ATP-dependent RNA helicase dbp-2 [Metarhizium acridum CQMa 102]
          Length = 552

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+ V TKR+A+D+T +L +       +H + +  ER  ++   + GK  ++V  ++  
Sbjct: 385 KILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVAS 444

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+    +  +L+ D   +  +    I  IGR  R
Sbjct: 445 RGIDVRN--ITHVLNYD---YPNNSEDYIHRIGRTGR 476


>gi|302846090|ref|XP_002954582.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
           nagariensis]
 gi|300260001|gb|EFJ44223.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
           nagariensis]
          Length = 424

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 10/126 (7%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G + ++ V TK  A+++   + E       +H ++   +R + +   R GK++ LV  ++
Sbjct: 242 GGKAIIFVNTKAKADEVNMAVNEF-ASCDALHGDISQAQREKALALFRDGKYNCLVATDV 300

Query: 642 LREGLDIPECGLVAILD--ADKEGFL-RSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              GLDIP   LVA  D   D E FL RS  +     GRA +   + V+L+ +   +S+ 
Sbjct: 301 AARGLDIPSVDLVAHFDLPQDNEAFLHRSGRT-----GRAGKT-GTAVVLFTEREARSLA 354

Query: 699 LAIDET 704
           L +  T
Sbjct: 355 LILRAT 360


>gi|296224810|ref|XP_002758206.1| PREDICTED: eukaryotic initiation factor 4A-II-like, partial
           [Callithrix jacchus]
          Length = 183

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 58  TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 117

Query: 651 CGLV 654
             LV
Sbjct: 118 VSLV 121


>gi|294012664|ref|YP_003546124.1| primosomal protein N' [Sphingobium japonicum UT26S]
 gi|292675994|dbj|BAI97512.1| primosomal protein N' [Sphingobium japonicum UT26S]
          Length = 723

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD---KEGFLRSK----TSLIQTI 675
           E ++ +  G  D+++G  L+ +G   P   LV ++DAD   + G LR+       ++Q  
Sbjct: 520 EFVKSVEAGAVDIIIGTQLVTKGYHFPNLTLVGVIDADLGLEGGDLRASERTFQQIVQVA 579

Query: 676 GRAARNVNSKVILYADTITKS--IQ-LAIDETTRRREKQLEHNKKHNINP 722
           GRA R      +     + ++  IQ L   ++ R  E + E+ ++ N+ P
Sbjct: 580 GRAGRGQKPGRVFIQTRMPEAEVIQALIAGDSERFYEVETENRRRANVPP 629


>gi|269795550|ref|YP_003315005.1| ATP-dependent DNA helicase RecQ [Sanguibacter keddieii DSM 10542]
 gi|269097735|gb|ACZ22171.1| ATP-dependent DNA helicase RecQ [Sanguibacter keddieii DSM 10542]
          Length = 979

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++  LT  +AE +   L    + V          ER  +  DL+  +   LV  + L  G
Sbjct: 525 IVYCLTVSVAEQVAAQLKAAGLPVAAYTGRTDPTERESLEADLKANRVKALVATSALGMG 584

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            D P+ G V  L     G   S  +  Q +GRA R V+S +++
Sbjct: 585 FDKPDLGFVVHL-----GAPSSPIAYYQQVGRAGRGVDSALVV 622


>gi|296811414|ref|XP_002846045.1| helicase C-terminal domain-containing protein [Arthroderma otae CBS
           113480]
 gi|238843433|gb|EEQ33095.1| helicase C-terminal domain-containing protein [Arthroderma otae CBS
           113480]
          Length = 1092

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++EII+  + G ++ +V  ++  EGLDI E  L+   D+       S   ++Q +GR  
Sbjct: 687 KQLEIIKKFKEGTYNTIVATSIGEEGLDIGEVDLIICYDSSA-----SPIRMLQRMGRTG 741

Query: 680 RNVNSKVIL 688
           R    KV+L
Sbjct: 742 RKRTGKVVL 750


>gi|224010271|ref|XP_002294093.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220970110|gb|EED88448.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 471

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+ V TK+  + LT  L     + R MH +    ER  ++R+ +  +  +LV  ++  
Sbjct: 317 RVLVFVETKKGCDMLTRSLRMDGFQARAMHGDKSQEERDWVLREFKSCQATLLVATDVAA 376

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +  +V   D     F     + I  IGR  R
Sbjct: 377 RGLDVDDIKMVVNFD-----FPNDTETYIHRIGRTGR 408


>gi|156369954|ref|XP_001628238.1| predicted protein [Nematostella vectensis]
 gi|156215209|gb|EDO36175.1| predicted protein [Nematostella vectensis]
          Length = 361

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L+A    R L+ V  KR+A+ L  +L + N     + S+    ER   +RD R G+ ++L
Sbjct: 203 LSATGTDRTLVFVELKRVADFLAAWLSQNNFPTTSISSDRCQSEREAALRDFRDGRANIL 262

Query: 637 VGINLLREGLDIP 649
           V  ++   GLDIP
Sbjct: 263 VATSVAARGLDIP 275


>gi|149244076|ref|XP_001526581.1| eukaryotic initiation factor 4A [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032533|sp|A5DVM3|IF4A_LODEL RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|146448975|gb|EDK43231.1| eukaryotic initiation factor 4A [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 397

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD I++      + ++   T+   E LT  L E+   V  +H+++   ER  I+++ R
Sbjct: 255 DLYDSISVT-----QAVIFCNTRSKVEFLTNKLREQKFTVSAIHADLPQGERDTIMKEFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   +L+  +LL  G+D+ +  LV   D  A+KE ++
Sbjct: 310 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 347


>gi|60501853|gb|AAX22126.1| vasa [Carassius auratus]
          Length = 688

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R G+  VLV  ++  
Sbjct: 505 RTMVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALSDFRTGQCPVLVATSVAA 564

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDI +   V   D        S    +  IGR  R  N
Sbjct: 565 RGLDIEQVQHVVNFD-----LPSSIDEYVHRIGRTGRCGN 599


>gi|104784351|ref|YP_610849.1| ATP-dependent DNA helicase RecG [Pseudomonas entomophila L48]
 gi|95113338|emb|CAK18066.1| ATP-dependent DNA helicase [Pseudomonas entomophila L48]
          Length = 692

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L   L E  +RV  +H  +K  E+  ++ + + G+  +LV   ++  G+D+P   L+ 
Sbjct: 508 EELGSALGE--LRVGLIHGRMKPAEKAAVMAEFKAGELQLLVATTVIEVGVDVPNASLMI 565

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 566 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 603


>gi|16273626|ref|NP_439884.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae Rd KW20]
 gi|260580699|ref|ZP_05848526.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae RdAW]
 gi|1172894|sp|P43809|RECG_HAEIN RecName: Full=ATP-dependent DNA helicase recG
 gi|1574599|gb|AAC23387.1| ATP-dependent DNA helicase (recG) [Haemophilus influenzae Rd KW20]
 gi|260092761|gb|EEW76697.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae RdAW]
          Length = 693

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+ L   NI +  +H  +K  E+ +++   +  + D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLTKALPMLNIGL--VHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           I +A++ G     + L Q  GR  R   +   V++Y   + K  Q
Sbjct: 567 IENAERLGL----SQLHQLRGRVGRGCTASFCVLMYKPPLGKVSQ 607


>gi|332077813|gb|EGI88272.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA41301]
          Length = 1171

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 130/309 (42%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  ++M+     A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDRIVLLMSTYG-EAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302



 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNTNTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|332071328|gb|EGI81823.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA17545]
          Length = 1169

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 130/309 (42%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  ++M+     A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDRIVLLMSTYG-EAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302



 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|326433130|gb|EGD78700.1| eukaryotic initiation factor 4A [Salpingoeca sp. ATCC 50818]
          Length = 473

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y+ +N A     + ++ V  +R A +L + L      V  +H E++  ERI  +   R
Sbjct: 331 DLYNSLNTA-----QTVVFVNRRRTALELEDRLVRDKFAVSVIHGEMEQDERIATLDRFR 385

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFL 665
            G+  VLV  N++  G+D+ +  LV   D   D+E ++
Sbjct: 386 SGQSRVLVATNVVARGIDVQQVSLVINYDVPLDRESYI 423


>gi|300821105|ref|ZP_07101254.1| transcription-repair coupling factor [Escherichia coli MS 119-7]
 gi|331676906|ref|ZP_08377602.1| transcription-repair coupling factor [Escherichia coli H591]
 gi|300526404|gb|EFK47473.1| transcription-repair coupling factor [Escherichia coli MS 119-7]
 gi|331075595|gb|EGI46893.1| transcription-repair coupling factor [Escherichia coli H591]
          Length = 1164

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 247 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|294788315|ref|ZP_06753558.1| transcription-repair coupling factor [Simonsiella muelleri ATCC
           29453]
 gi|294483746|gb|EFG31430.1| transcription-repair coupling factor [Simonsiella muelleri ATCC
           29453]
          Length = 1131

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 6/113 (5%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK+G ++    L  +LV   Y      +  G F V G  +++FP    D  +R+ +F  +
Sbjct: 125 LKVGQNLNLDALRENLVNAGYSAVSNVVANGEFAVRGGIVDLFPMG-SDFPYRIDLFDKE 183

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           I+ I  F P T + +  V  I++     +    PT   A K  + + +  LIE
Sbjct: 184 IDSIKTFDPETQRTLHPVSEIRMLPAHEF----PTDEHAQKLFRTQFR-ELIE 231



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+   H +++  E  +++RD    KF+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 826 RIGVAHGQLRERELEQVMRDFLNQKFNVLLCSTIIETGIDIPNANTIIINRADKFGI--- 882

Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
              L Q  GR  R+ +     +L  + +TK  Q  +D
Sbjct: 883 -AQLHQLRGRVGRSHHQAYAYLLTPEYLTKDAQKRLD 918


>gi|294631256|ref|ZP_06709816.1| ATP-dependent RNA helicase DeaD [Streptomyces sp. e14]
 gi|292834589|gb|EFF92938.1| ATP-dependent RNA helicase DeaD [Streptomyces sp. e14]
          Length = 960

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL ++    TKR A DL + L +R      +H ++    R + +R  R GK DVLV
Sbjct: 310 AEGRGLAMIF-CRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLV 368

Query: 638 GINLLREGLDI 648
             ++   G+D+
Sbjct: 369 CTDVAARGIDV 379


>gi|259047319|ref|ZP_05737720.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
 gi|259036015|gb|EEW37270.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
          Length = 520

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  R   +H ++   +R+ ++RD +    D+LV  ++   GLDI  
Sbjct: 259 TKRRVDELARGLEMRGYRAEGIHGDLSQQKRMSVLRDFKNNHLDILVATDVAARGLDI-- 316

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 317 SGVTHVYNYD---IPQDPESYVHRIGRTGR 343


>gi|302878653|ref|YP_003847217.1| ATP-dependent DNA helicase, RecQ family [Gallionella
           capsiferriformans ES-2]
 gi|302581442|gb|ADL55453.1| ATP-dependent DNA helicase, RecQ family [Gallionella
           capsiferriformans ES-2]
          Length = 1707

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 6/122 (4%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AED++ +L E      + H+ ++  E+ ++ ++   G   V+V  N    G+D P+ 
Sbjct: 536 RKSAEDISAFLKEMGWNCAFFHAGLQPDEKNDVQQNFISGGLRVIVATNAFGMGVDKPD- 594

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSIQLAIDETTRRREK 710
            + A++ A+  G L    + +Q  GRA R+ N S+ IL  D     +Q  +   +R   K
Sbjct: 595 -VRAVIHAEIPGSLE---NYLQEAGRAGRDRNQSRCILLYDEEDVEVQFGLAARSRLSRK 650

Query: 711 QL 712
            +
Sbjct: 651 DI 652


>gi|295662382|ref|XP_002791745.1| ATP-dependent RNA helicase DBP2 [Paracoccidioides brasiliensis
           Pb01]
 gi|226279871|gb|EEH35437.1| ATP-dependent RNA helicase DBP2 [Paracoccidioides brasiliensis
           Pb01]
          Length = 547

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  ++V  ++  
Sbjct: 378 KILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVAS 437

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+ +  +  +L+ D   +  +    +  IGR  R
Sbjct: 438 RGIDVRD--ITHVLNYD---YPNNSEDYVHRIGRTGR 469


>gi|156043047|ref|XP_001588080.1| hypothetical protein SS1G_10526 [Sclerotinia sclerotiorum 1980]
 gi|154694914|gb|EDN94652.1| hypothetical protein SS1G_10526 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 548

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 46/96 (47%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE R    ++  +  +    +Q+  RIL+  L K+ A  +  ++ ++  RV  +H ++  
Sbjct: 409 VEPRDKEYRLMQLLKQYQSGSQKDDRILVFCLYKKEATRVEGFIRQKGFRVAGIHGDLSQ 468

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            +R   +   + G   VLV  ++   GLDIP   LV
Sbjct: 469 EQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLV 504


>gi|13874468|dbj|BAB46863.1| hypothetical protein [Macaca fascicularis]
          Length = 242

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 117 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 176

Query: 651 CGLV 654
             LV
Sbjct: 177 VSLV 180


>gi|87121489|ref|ZP_01077378.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
 gi|86163332|gb|EAQ64608.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
          Length = 617

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 11/155 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK    +L E L  R      ++ ++    R   +  ++ G+ D+LV  +++  
Sbjct: 250 MIIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVERIKRGQIDILVATDVVAR 309

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDI     V   D   D E ++      I   GRA R  N+  IL+     + +  AI+
Sbjct: 310 GLDIDRISHVVNYDIPYDTESYVHR----IGRTGRAGRTGNA--ILFVAHRERRMLQAIE 363

Query: 703 ETTRRREKQLEHNKKHNINPQSV---KEKIMEVID 734
             TR+  ++++     +IN Q V   K++I + +D
Sbjct: 364 RATRQPIERMQLPTASDINTQRVNRFKQRITDTLD 398


>gi|332821349|ref|XP_003310754.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 2 [Pan
           troglodytes]
          Length = 575

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 393 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAA 452

Query: 644 EGLDI 648
            GLDI
Sbjct: 453 RGLDI 457


>gi|312143899|ref|YP_003995345.1| ATP-dependent DNA helicase RecG [Halanaerobium sp. 'sapolanicus']
 gi|311904550|gb|ADQ14991.1| ATP-dependent DNA helicase RecG [Halanaerobium sp. 'sapolanicus']
          Length = 685

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 595 AEDLTEYL---YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           AE+L E L   +  +  +  +HS +K  E+ EI+   R GK D+L+   ++  G+D+   
Sbjct: 497 AEELYEKLKNGFFADFSLALLHSGIKEEEKKEIMLQFRAGKIDILIATTVIEVGVDVSNA 556

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            L+ I +A++ G       L Q  GR  R 
Sbjct: 557 SLMIIENAERFGL----AQLHQLRGRVGRG 582


>gi|307548813|dbj|BAJ19133.1| vasa [Misgurnus anguillicaudatus]
          Length = 644

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  I    +H + +  ER + + D R G+  VLV  ++  
Sbjct: 455 RTMVFVGTKRSADFIATFLCQEKIPTTSIHGDREQREREKALSDFRTGQCPVLVATSVAA 514

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDI     V   D        S    +  IGR  R  N
Sbjct: 515 RGLDIEHVQHVVNFD-----LPSSIDEYVHRIGRTGRCGN 549


>gi|301513499|ref|ZP_07238736.1| Type III restriction enzyme, res subunit [Acinetobacter baumannii
           AB058]
          Length = 423

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 15/116 (12%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R  +E+ +D I +A    +        KR  E    Y  E++++   + S  KT  + E+
Sbjct: 274 REDLENGFDHIVMARASSM--------KRAKEIFNIYSKEKDLKPVLIDS--KTKNKTEV 323

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++ +R  +  ++V +N+L EG D+P+  + AI D  K     S   ++Q  GR  R
Sbjct: 324 LKAIRNREHKIIVCVNMLGEGFDLPQLKISAIHDPHK-----SINVMLQFTGRFTR 374


>gi|268325275|emb|CBH38863.1| putative DNA repair helicase [uncultured archaeon]
          Length = 460

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EI+   R GK+  +V   +L EG+D+PE  +  IL         SK    Q +GR  
Sbjct: 373 ERAEIMDKFRAGKYKAIVTSKVLEEGIDVPEASVGVILSGSG-----SKREYKQRLGRIL 427

Query: 680 RNVNSKVILYADTITK 695
           R    K+ +  + I+K
Sbjct: 428 RKKEGKLAILYEIISK 443


>gi|325982541|ref|YP_004294943.1| primosomal protein N' [Nitrosomonas sp. AL212]
 gi|325532060|gb|ADZ26781.1| primosomal protein N' [Nitrosomonas sp. AL212]
          Length = 737

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           EI+  +   + D+L+G  LL +G D P   LV IL+AD   +        R    L+Q  
Sbjct: 533 EILHAIHTQQVDILIGTQLLAKGHDFPNLSLVGILNADTSLYSTDFRASERLFAQLMQVS 592

Query: 676 GRAAR-NVNSKVIL 688
           GRA R NV   V++
Sbjct: 593 GRAGRANVAGHVLI 606


>gi|209881795|ref|XP_002142335.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209557941|gb|EEA07986.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 498

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 5/98 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L +LL   +K  A+ L   +   N+ V  +HS++   +R  I++  R G+  VL+  +L+
Sbjct: 351 LPVLLFTNSKENAQKLFSKIVFDNLLVDMIHSDMAKTKRDNIVKKFRTGQIWVLICTDLI 410

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             G+D      V   D     F ++ T  I  IGR+ R
Sbjct: 411 ARGVDFKNVATVINYD-----FPQTSTIYIHRIGRSGR 443


>gi|218440062|ref|YP_002378391.1| primosome assembly protein PriA [Cyanothece sp. PCC 7424]
 gi|218172790|gb|ACK71523.1| primosomal protein N' [Cyanothece sp. PCC 7424]
          Length = 825

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 13/101 (12%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ ++LT    E R IR     +  K   R E++     G+ DVLVG  +L +GLD+ 
Sbjct: 589 TQKVTQELTRQFPELRWIRFDSDTTRQKGAHR-ELLSQFARGEADVLVGTQMLTKGLDLA 647

Query: 650 ECGLVAILDADKEGFL---------RSKTSLIQTIGRAARN 681
           +  LV ++ AD  G L         R+  +L Q  GRA R 
Sbjct: 648 QVTLVGVVAAD--GLLFHSDYRASERAFQTLTQVAGRAGRG 686


>gi|149020164|ref|ZP_01835138.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP23-BS72]
 gi|147930842|gb|EDK81823.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP23-BS72]
          Length = 1169

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 130/309 (42%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  ++M+     A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDRIVLLMSTYG-EAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302



 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|170020491|ref|YP_001725445.1| transcription-repair coupling factor [Escherichia coli ATCC 8739]
 gi|169755419|gb|ACA78118.1| transcription-repair coupling factor [Escherichia coli ATCC 8739]
          Length = 1164

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 247 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|115292171|emb|CAK32533.1| putative dicer-like protein [Mucor circinelloides]
          Length = 1529

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++K  ++ E+I   R G+ ++L+  N+  EGLDI  C  V   D       ++  + IQ+
Sbjct: 457 QMKYTKQNEVIAKFRAGELNLLIATNVAEEGLDIQACNYVIRFD-----LFKTVIAYIQS 511

Query: 675 IGRAARNVNSKVIL 688
            GRA R  +SK IL
Sbjct: 512 RGRARRK-DSKYIL 524


>gi|315040958|ref|XP_003169856.1| ATP-dependent RNA helicase DBP2 [Arthroderma gypseum CBS 118893]
 gi|311345818|gb|EFR05021.1| ATP-dependent RNA helicase DBP2 [Arthroderma gypseum CBS 118893]
          Length = 558

 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  ++V  ++  
Sbjct: 390 KVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVAS 449

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+ +  +  +L+ D   +  +    +  IGR  R
Sbjct: 450 RGIDVRD--ITHVLNHD---YPNNSEDYVHRIGRTGR 481


>gi|290889928|ref|ZP_06553015.1| hypothetical protein AWRIB429_0405 [Oenococcus oeni AWRIB429]
 gi|290480538|gb|EFD89175.1| hypothetical protein AWRIB429_0405 [Oenococcus oeni AWRIB429]
          Length = 676

 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
            ++  R+ E+L  Y      R+  +H  +   E+ ++I D    +  VLV   ++  G+D
Sbjct: 484 VLIYDRLKEELKPY------RIGLLHGRLTNDEKQQVINDFSTNRVQVLVTTTVIEVGVD 537

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITK 695
           I    ++ ILDAD+ G       L Q  GR  R    S  IL +D  T+
Sbjct: 538 IKNATIMVILDADRFGI----AQLHQLRGRVGRGKKQSYAILVSDPKTQ 582


>gi|221059537|ref|XP_002260414.1| helicase [Plasmodium knowlesi strain H]
 gi|193810487|emb|CAQ41681.1| helicase, putative [Plasmodium knowlesi strain H]
          Length = 528

 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RI++ V TK+ A+ +T+ L    +    +H + K  ER  ++ D + GK  +L+  ++  
Sbjct: 362 RIIVFVETKKNADFITKALRLDGVPALCIHGDKKQDERRWVLNDFKTGKSPILIATDVAS 421

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLDI +   V   D     F       +  IGR  R
Sbjct: 422 RGLDIKDVKYVVNFD-----FPNQIEDYVHRIGRTGR 453


>gi|154686003|ref|YP_001421164.1| ATP-dependent DNA helicase RecG [Bacillus amyloliquefaciens FZB42]
 gi|154351854|gb|ABS73933.1| RecG [Bacillus amyloliquefaciens FZB42]
          Length = 682

 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           +Y     V  MH ++ + E+ +++R+    +  VLV   ++  G+++P   ++ I DAD+
Sbjct: 497 VYRGKWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADR 556

Query: 662 EGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691
            G     + L Q  GR  R +  S  IL AD
Sbjct: 557 FGL----SQLHQLRGRVGRGDHQSFCILMAD 583


>gi|41407085|ref|NP_959921.1| hypothetical protein MAP0987 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395436|gb|AAS03304.1| Mfd [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 1221

 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           V L +G  +E + +++ LV+  Y R D+   RG F V G  +++FP   E    RV  +G
Sbjct: 154 VTLSVGQEIEFEHVIARLVELAYSRVDMVGRRGEFAVRGGILDVFPPTAEHPV-RVEFWG 212

Query: 355 NDIEEISEF 363
           +++ E+  F
Sbjct: 213 DEVSEMRMF 221


>gi|327302680|ref|XP_003236032.1| ATP-dependent RNA helicase DBP2 [Trichophyton rubrum CBS 118892]
 gi|326461374|gb|EGD86827.1| ATP-dependent RNA helicase DBP2 [Trichophyton rubrum CBS 118892]
          Length = 538

 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  ++V  ++  
Sbjct: 371 KVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVAS 430

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+ +  +  +L+ D   +  +    +  IGR  R
Sbjct: 431 RGIDVRD--ITHVLNHD---YPNNSEDYVHRIGRTGR 462


>gi|317496128|ref|ZP_07954488.1| type III restriction enzyme [Gemella moribillum M424]
 gi|316913703|gb|EFV35189.1| type III restriction enzyme [Gemella moribillum M424]
          Length = 512

 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 97/193 (50%), Gaps = 19/193 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-------EDVYDEIN 576
           T + +SATP   ++++    I++  IR  G + P  +I+  +++V       + +   I 
Sbjct: 310 TLVFLSATPSD-KVKKLVDEIIKIPIRFHGYLLPIPKIKIEQSKVFTYEKKSQYITQFIT 368

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYER---NIRVRYMHSEVKTLERIEIIRDLRLGKF 633
              +   R+L+   T  M++ L  YL +    N+ + +++SE +  +R E +   +  + 
Sbjct: 369 QRLELARRLLIFAPTIAMSKSLKLYLEKSLVDNVIIDFVYSEDE--KRQEKVEKFKKWEI 426

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NVNSKVILYA 690
           D+L+   +L  G+       V + +++ + F  +K +LIQ  GR  R   + + +++  A
Sbjct: 427 DILITTTILERGVTFDYLD-VLVFESNHKIF--TKEALIQIAGRVGRKEYDYSGEIVFLA 483

Query: 691 DTITKSIQLAIDE 703
           D I K+++LAI E
Sbjct: 484 DKINKNMKLAIKE 496


>gi|300922643|ref|ZP_07138740.1| transcription-repair coupling factor [Escherichia coli MS 182-1]
 gi|300420992|gb|EFK04303.1| transcription-repair coupling factor [Escherichia coli MS 182-1]
          Length = 1164

 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 247 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|284006731|emb|CBA71988.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
          Length = 449

 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V  +  A +L ++L + NI+   +  E+   +R E ++ L  G+ +VLV  ++   G
Sbjct: 259 IIFVRKRERAHELVQWLQQANIKTWLLEGEMVQAKRTEAVKRLNSGQINVLVATDVASRG 318

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDI +   V   D       R+    +  IGR AR
Sbjct: 319 LDIDDISHVFNFD-----LPRTADVYLHRIGRTAR 348


>gi|189219366|ref|YP_001940007.1| RecG-like helicase [Methylacidiphilum infernorum V4]
 gi|189186224|gb|ACD83409.1| RecG-like helicase [Methylacidiphilum infernorum V4]
          Length = 694

 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 16/175 (9%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKT----FTMAKVIEAMQRP 195
           F     ++P+  Q  A+ ++ + + S   + +LLLG  GSGKT    +   K +E  Q  
Sbjct: 253 FLSSLPFNPTSAQKKAMEEIDRDLESASPMNRLLLGDVGSGKTLVAVYAAIKTVERGQN- 311

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            + M+P   LA+Q Y   K +    AV  F    D  Q E ++P TD         NE +
Sbjct: 312 VLFMSPTGALASQHYLTLKKWLSSLAVPLFYIGRDVGQKEEFLP-TD---------NENV 361

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
               H +  S       + V + + ++   + +S   +I+  +    VEQ+  L+
Sbjct: 362 FFHEHPSDLSPGSLPGKVFVGTHALLFRSFNPDSLGLVIIDEQHKFGVEQRAALA 416


>gi|157692267|ref|YP_001486729.1| ATP-dependent DNA helicase RecG [Bacillus pumilus SAFR-032]
 gi|157681025|gb|ABV62169.1| DNA helicase RecG [Bacillus pumilus SAFR-032]
          Length = 682

 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTE  Y     +  MH ++ + E+ +++RD    +  +LV   ++  G+++P   ++ I 
Sbjct: 494 LTE-AYRGKWSIGLMHGKLASDEKDQVMRDFTANEVQILVSTTVVEVGVNVPNATIMVIY 552

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVN-SKVILYAD 691
           DAD+ G     + L Q  GR  R  + S  IL AD
Sbjct: 553 DADRFGL----SQLHQLRGRVGRGEHQSFCILMAD 583


>gi|154271069|ref|XP_001536388.1| hypothetical protein HCAG_08709 [Ajellomyces capsulatus NAm1]
 gi|160380608|sp|A6RGE3|DBP2_AJECN RecName: Full=ATP-dependent RNA helicase DBP2
 gi|150409611|gb|EDN05055.1| hypothetical protein HCAG_08709 [Ajellomyces capsulatus NAm1]
          Length = 542

 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/104 (22%), Positives = 53/104 (50%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A +  ++L+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  ++
Sbjct: 368 MEANKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIM 427

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+D+ +  +  +L+ D   +  +    +  IGR  R
Sbjct: 428 VATDVASRGIDVRD--ITHVLNYD---YPNNSEDYVHRIGRTGR 466


>gi|146306624|ref|YP_001187089.1| transcription-repair coupling factor [Pseudomonas mendocina ymp]
 gi|145574825|gb|ABP84357.1| transcription-repair coupling factor [Pseudomonas mendocina ymp]
          Length = 1145

 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 42/208 (20%), Positives = 85/208 (40%), Gaps = 21/208 (10%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+      R  +V+      A +L  E   F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASNAGRFTLVLTEGSQSAERLQEELAFFAPDLPVLHFPDWETLPYDV 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P             +  I+++I  +      S       +VV   + ++ +       
Sbjct: 81  FSPH------------QDIISQRIATLYRLPQLS----RGILVVPIATALHRLAPKRFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++ +++ + L    Y+  D     G F V G  I++FP   E V +R+ 
Sbjct: 125 GSSLVLDVGQKLDVEQMRTRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-VPYRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKI 379
           +F ++IE +  F P   + +  VE+I++
Sbjct: 184 LFDDEIETLRTFDPENQRSVDKVESIRL 211



 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 9/117 (7%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           + A +L E + E  I V   H +++  E  +++ D    +F+VLV   ++  G+D+P   
Sbjct: 823 KCASELAELVPEARIGVG--HGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSAN 880

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
            + I  ADK G       L Q  GR  R+ +     YA  +T   +   D+  +R E
Sbjct: 881 TIIIERADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPPRKSMTDDAQKRLE 930


>gi|15836857|ref|NP_297545.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
 gi|9105065|gb|AAF83065.1|AE003878_13 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
          Length = 614

 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 4/121 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R +    ++ +++  +R   I  L+ GK D+LV  ++   
Sbjct: 257 MIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAAR 316

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+     V  L+ D    + S    I   GRA R  + + IL+     K +   I+  
Sbjct: 317 GLDVERISHV--LNYDIPYDVESYVHRIGRTGRAGR--SGEAILFVTPREKGMLRQIERA 372

Query: 705 T 705
           T
Sbjct: 373 T 373


>gi|66800751|ref|XP_629301.1| hypothetical protein DDB_G0293064 [Dictyostelium discoideum AX4]
 gi|60462682|gb|EAL60884.1| hypothetical protein DDB_G0293064 [Dictyostelium discoideum AX4]
          Length = 573

 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 12/115 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRD 627
           D   EI  +A +  + L+  +TK+ A+ L  Y+     N+R+  +H +V    R  I++D
Sbjct: 377 DTLGEI-YSADEKAQTLIFTMTKKGADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQD 435

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVA--ILDADKEGFLRSKTSLIQTIGRAAR 680
            +  + D++V  ++   GLDI     V    L +D E +       +  IGR  R
Sbjct: 436 FKNKRLDIVVATDVASRGLDIKGISHVINFSLPSDCETY-------VHRIGRTGR 483


>gi|332279698|ref|ZP_08392111.1| transcription-repair coupling factor [Shigella sp. D9]
 gi|332102050|gb|EGJ05396.1| transcription-repair coupling factor [Shigella sp. D9]
          Length = 1169

 Score = 41.2 bits (95), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 37  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 96

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 97  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 145

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 146 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 196

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 197 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 251

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 252 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 294

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 295 SYFPANTLL 303



 Score = 37.4 bits (85), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 844 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 901

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 902 NTIIIERADHFGL----AQLHQLRGRVGRS 927


>gi|315171197|gb|EFU15214.1| primosomal protein [Enterococcus faecalis TX1342]
          Length = 810

 Score = 41.2 bits (95), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 15/101 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+++ E+L   L E     R +  +V T  R     +I+R    G+ D+L+G  ++ +GL
Sbjct: 571 TQKVEEELQTLLPES----RILRMDVDTTRRKGAHEKILRTFGEGQADILLGTQMIAKGL 626

Query: 647 DIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           D P   LV +L+AD    L       R+   L Q  GRA R
Sbjct: 627 DFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVSGRAGR 667


>gi|312953220|ref|ZP_07772066.1| primosomal protein [Enterococcus faecalis TX0102]
 gi|310628837|gb|EFQ12120.1| primosomal protein [Enterococcus faecalis TX0102]
 gi|315152789|gb|EFT96805.1| primosomal protein [Enterococcus faecalis TX0031]
 gi|315159376|gb|EFU03393.1| primosomal protein [Enterococcus faecalis TX0312]
          Length = 810

 Score = 41.2 bits (95), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 15/101 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+++ E+L   L E     R +  +V T  R     +I+R    G+ D+L+G  ++ +GL
Sbjct: 571 TQKVEEELQTLLPES----RILRMDVDTTRRKGAHEKILRTFGEGQADILLGTQMIAKGL 626

Query: 647 DIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           D P   LV +L+AD    L       R+   L Q  GRA R
Sbjct: 627 DFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVSGRAGR 667


>gi|261868130|ref|YP_003256052.1| ATP-dependent DNA helicase RecG [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413462|gb|ACX82833.1| ATP-dependent DNA helicase RecG [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 693

 Score = 41.2 bits (95), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H  +K  E+  ++   +L + D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 517 HLRIGLVHGRMKPNEKQAVMAQFKLAELDLLVATTVIEVGVDVPNASLMIIENAERLGL- 575

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITK 695
              + L Q  GR  R   +   V++Y   + K
Sbjct: 576 ---SQLHQLRGRVGRGSTASFCVLMYKPPLGK 604


>gi|115452607|ref|NP_001049904.1| Os03g0308500 [Oryza sativa Japonica Group]
 gi|122247124|sp|Q10MH8|RH24_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 24
 gi|108707754|gb|ABF95549.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113548375|dbj|BAF11818.1| Os03g0308500 [Oryza sativa Japonica Group]
 gi|215737377|dbj|BAG96306.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 770

 Score = 41.2 bits (95), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   +++   L +R  R+  +H +     R+E ++  + G + VLV  ++   
Sbjct: 467 VLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVATDVAAR 526

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           GLDI     V   D  KE  +      I  IGR  R  +     Y     K ++ A
Sbjct: 527 GLDIKSIKTVVNFDIAKEMDMH-----IHRIGRTGRAGDKDGTAYTLITQKEVRFA 577


>gi|320160931|ref|YP_004174155.1| ATP-dependent DNA helicase RecG [Anaerolinea thermophila UNI-1]
 gi|319994784|dbj|BAJ63555.1| ATP-dependent DNA helicase RecG [Anaerolinea thermophila UNI-1]
          Length = 816

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
            R+  MH ++K  E+ E++   R GK+ +LV  +++  G+D+P   ++ I  A++ G   
Sbjct: 637 FRIGMMHGKLKPEEKDEVMAGFRDGKYHILVSTSVIEVGVDVPNATVMLIEGANRFGL-- 694

Query: 667 SKTSLIQTIGRAARN 681
               L Q  GR  R 
Sbjct: 695 --AQLHQFRGRVGRG 707


>gi|313236949|emb|CBY12196.1| unnamed protein product [Oikopleura dioica]
          Length = 390

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 36/64 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  E LT+ L  R+  V  MH ++    R +++R+ R G   VL+  +LL  G+D+ +
Sbjct: 265 TRKKVEWLTQQLNRRDFTVSCMHGDMDQKNREQVMREFRTGSSRVLITTDLLARGIDVQQ 324

Query: 651 CGLV 654
             LV
Sbjct: 325 VSLV 328


>gi|300933595|ref|ZP_07148851.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
          Length = 779

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 5/149 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R      ++ ++   +R   +  L+ G+ D+LV  ++   
Sbjct: 353 MIMFVRTKNETEELAERLRARGFNAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAAR 412

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+    +  + + D      S    I   GRA R  + + IL+     + +  AI+  
Sbjct: 413 GLDVDR--ITHVFNYDIPHDTESYVHRIGRTGRAGR--SGRAILFVTPRERRLLKAIERA 468

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+    ++E      +N  + KEK  E +
Sbjct: 469 TKSTLNEIELPSVDAVN-DARKEKFREAL 496


>gi|262118318|ref|NP_001160006.1| probable ATP-dependent RNA helicase DDX4 isoform 4 [Homo sapiens]
          Length = 575

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 393 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAA 452

Query: 644 EGLDI 648
            GLDI
Sbjct: 453 RGLDI 457


>gi|257081095|ref|ZP_05575456.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
 gi|256989125|gb|EEU76427.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
          Length = 513

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  +   +H ++   +R+ ++R  + G  D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|255970683|ref|ZP_05421269.1| primosomal protein n [Enterococcus faecalis T1]
 gi|255961701|gb|EET94177.1| primosomal protein n [Enterococcus faecalis T1]
          Length = 797

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 15/101 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+++ E+L   L E     R +  +V T  R     +I+R    G+ D+L+G  ++ +GL
Sbjct: 558 TQKVEEELQTLLPES----RILRMDVDTTRRKGAHEKILRTFGEGQADILLGTQMIAKGL 613

Query: 647 DIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           D P   LV +L+AD    L       R+   L Q  GRA R
Sbjct: 614 DFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVSGRAGR 654


>gi|255971301|ref|ZP_05421887.1| helicase [Enterococcus faecalis T1]
 gi|256617719|ref|ZP_05474565.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256761605|ref|ZP_05502185.1| helicase [Enterococcus faecalis T3]
 gi|256854305|ref|ZP_05559669.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256957293|ref|ZP_05561464.1| helicase [Enterococcus faecalis DS5]
 gi|256959973|ref|ZP_05564144.1| helicase [Enterococcus faecalis Merz96]
 gi|256964332|ref|ZP_05568503.1| helicase [Enterococcus faecalis HIP11704]
 gi|257077733|ref|ZP_05572094.1| helicase [Enterococcus faecalis JH1]
 gi|257083763|ref|ZP_05578124.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|257086188|ref|ZP_05580549.1| helicase [Enterococcus faecalis D6]
 gi|257089260|ref|ZP_05583621.1| helicase [Enterococcus faecalis CH188]
 gi|257415413|ref|ZP_05592407.1| helicase [Enterococcus faecalis AR01/DG]
 gi|257418444|ref|ZP_05595438.1| helicase [Enterococcus faecalis T11]
 gi|257421095|ref|ZP_05598085.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294781261|ref|ZP_06746607.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300859873|ref|ZP_07105961.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
           TUSoD Ef11]
 gi|255962319|gb|EET94795.1| helicase [Enterococcus faecalis T1]
 gi|256597246|gb|EEU16422.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256682856|gb|EEU22551.1| helicase [Enterococcus faecalis T3]
 gi|256709865|gb|EEU24909.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256947789|gb|EEU64421.1| helicase [Enterococcus faecalis DS5]
 gi|256950469|gb|EEU67101.1| helicase [Enterococcus faecalis Merz96]
 gi|256954828|gb|EEU71460.1| helicase [Enterococcus faecalis HIP11704]
 gi|256985763|gb|EEU73065.1| helicase [Enterococcus faecalis JH1]
 gi|256991793|gb|EEU79095.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|256994218|gb|EEU81520.1| helicase [Enterococcus faecalis D6]
 gi|256998072|gb|EEU84592.1| helicase [Enterococcus faecalis CH188]
 gi|257157241|gb|EEU87201.1| helicase [Enterococcus faecalis ARO1/DG]
 gi|257160272|gb|EEU90232.1| helicase [Enterococcus faecalis T11]
 gi|257162919|gb|EEU92879.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294451597|gb|EFG20053.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300850691|gb|EFK78440.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
           TUSoD Ef11]
 gi|323480025|gb|ADX79464.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62]
          Length = 515

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  +   +H ++   +R+ ++R  + G  D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|289209171|ref|YP_003461237.1| ATP-dependent DNA helicase RecG [Thioalkalivibrio sp. K90mix]
 gi|288944802|gb|ADC72501.1| ATP-dependent DNA helicase RecG [Thioalkalivibrio sp. K90mix]
          Length = 687

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L E L E +I +   H  +K  ER  ++   R G  D+LV   ++  G+D+P   L+ I 
Sbjct: 505 LREALPELSIGL--AHGRMKGPERDTVMERFRAGALDLLVATTVIEVGVDVPNASLMIIE 562

Query: 658 DADKEGFLRSKTSLIQTIGRAARN--VNSKVILY 689
           +A++ G     + L Q  GR  R    ++ V+LY
Sbjct: 563 NAERMGL----SQLHQLRGRVGRGNTASACVLLY 592


>gi|126325503|ref|XP_001378186.1| PREDICTED: similar to helicase like protein 2 [Monodelphis
           domestica]
          Length = 829

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 599 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 657

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 658 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDRNI- 716

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 717 ---NITKDL 722


>gi|111018675|ref|YP_701647.1| DNA repair helicase [Rhodococcus jostii RHA1]
 gi|110818205|gb|ABG93489.1| possible DNA repair helicase [Rhodococcus jostii RHA1]
          Length = 574

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           + +A  ++E V +   + AQ G  IL +  TK  +    E L E  +      S++   +
Sbjct: 272 LAAATGKLETVRELGGVLAQTGRSILFSE-TKESSRAAAEVLLEEGVLAAPYTSDLSRTD 330

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  ++   + G    LV   +L EG+D+PE  +  IL + K     S+  +IQ +GR  R
Sbjct: 331 RTTLLGAFKSGAMKALVAPKVLDEGVDVPEADVGVILASSK-----SRRQMIQRMGRIIR 385


>gi|124810293|ref|XP_001348829.1| helicase 45 [Plasmodium falciparum 3D7]
 gi|23497730|gb|AAN37268.1| helicase 45 [Plasmodium falciparum 3D7]
 gi|83272531|gb|ABC00776.1| eIF4A-like [Plasmodium falciparum]
 gi|112434012|gb|ABI18354.1| eIF4A-like [Plasmodium falciparum]
          Length = 398

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  + LT+ ++ R   V  MH ++   +R  I+R+ R G   VLV  +LL  G+D+ +
Sbjct: 271 TRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARGIDVQQ 330

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        S  + I  IGR+ R
Sbjct: 331 VSLVINYDLPA-----SPDTYIHRIGRSGR 355


>gi|23098064|ref|NP_691530.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
 gi|22776289|dbj|BAC12565.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 495

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++ E L  R  R   +H ++   +R+ +++  + G+ DVLV  ++   GLDI  
Sbjct: 249 TKKRVDEVAEGLQARGYRSEGIHGDLTQGKRMSVLKKFKQGRVDVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 307 SGVTHVYNFD---IPQDPESYVHRIGRTGR 333


>gi|329116498|ref|ZP_08245215.1| helicase C-terminal domain protein [Streptococcus parauberis NCFD
           2020]
 gi|326906903|gb|EGE53817.1| helicase C-terminal domain protein [Streptococcus parauberis NCFD
           2020]
          Length = 456

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 31/47 (65%), Gaps = 2/47 (4%)

Query: 607 IRVRYMHSEVKT--LERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           + +  +H++ KT   ER ++++D R GK  ++  ++L+ EG D+P+C
Sbjct: 212 LGINAVHADAKTPKAERDKLMQDFREGKIQIICNVDLISEGFDVPDC 258


>gi|315135746|dbj|BAJ42905.1| transcription-repair coupling factor [Escherichia coli DH1]
          Length = 1169

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 37  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 96

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 97  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 145

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 146 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 196

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 197 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 251

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 252 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 294

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 295 SYFPANTLL 303



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 844 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 901

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 902 NTIIIERADHFGL----AQLHQLRGRVGRS 927


>gi|300120970|emb|CBK21212.2| unnamed protein product [Blastocystis hominis]
          Length = 617

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 11/118 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   +KR A++LT  L +R      +H + +  ER  ++ + + G+  ++V  ++  
Sbjct: 439 RCIIFTQSKRGADELTRILRQRGFNALAIHGDKEQRERDFVLHEFKSGRVTIMVATDVAS 498

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV------NSKVILYADTITK 695
            GLD+ +  +V   D     F       I  +GRA R           V  + DT  K
Sbjct: 499 RGLDVKDIRVVINYD-----FPSCVEDYIHRVGRAGRKTADGYSEGMAVSFFTDTSAK 551


>gi|218199270|gb|EEC81697.1| hypothetical protein OsI_25294 [Oryza sativa Indica Group]
          Length = 639

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L  +LY        +H +    ER   +R  + G   +LV  ++   G
Sbjct: 433 LVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREYALRSFKSGATPILVATDVAARG 492

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R   S +
Sbjct: 493 LDIPHVAHVINFDLPND-----IDDYVHRIGRTGRAGKSGL 528


>gi|217076137|ref|YP_002333853.1| type III restriction enzyme, res subunit [Thermosipho africanus
           TCF52B]
 gi|217035990|gb|ACJ74512.1| type III restriction enzyme, res subunit [Thermosipho africanus
           TCF52B]
          Length = 697

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 8/138 (5%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVL--TKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           I++A+ +++ + D I+   +    I  T++    ++  +  + L  +NI       E+  
Sbjct: 522 IKAAKNKIKVLEDIISDIEKNNGEISHTIIFTDDKLINETIDLLKSKNIYAVKFTQELSN 581

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            +RI+++ +   G   VLV + +L EG+D+PE  +  I+ +       +    IQ IGR 
Sbjct: 582 KQRIDVLENFGKGIIQVLVAMKILDEGVDVPESKIAIIMSSS-----TNPREFIQRIGRI 636

Query: 679 AR-NVNSKVILYADTITK 695
            R + N K     D ITK
Sbjct: 637 LRISENKKYSYIYDIITK 654


>gi|260826097|ref|XP_002608002.1| hypothetical protein BRAFLDRAFT_74954 [Branchiostoma floridae]
 gi|229293352|gb|EEN64012.1| hypothetical protein BRAFLDRAFT_74954 [Branchiostoma floridae]
          Length = 430

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 16/153 (10%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   +D+ EYL  + +    +H      ER   I   R GK DVLV  ++  +
Sbjct: 243 VLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEERTRAIEAFREGKKDVLVATDVASK 302

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P+   V   D  ++       + +  IGR  R   + +       T  I  A DE+
Sbjct: 303 GLDFPDIQHVINFDMPED-----IENYVHRIGRTGRCGKTGI------ATTFINKACDES 351

Query: 705 TRRREKQLEHNKKHNINP-----QSVKEKIMEV 732
                K L    K  I P     +S  EK +E+
Sbjct: 352 VLLDLKHLLLEAKQKIPPVLETLESESEKYLEL 384


>gi|195328469|ref|XP_002030937.1| GM24308 [Drosophila sechellia]
 gi|194119880|gb|EDW41923.1| GM24308 [Drosophila sechellia]
          Length = 592

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +QGL+  +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G   VL+
Sbjct: 362 RQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAEKSHHQRDNCVRAFREGSIWVLI 421

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+  G+D     LV   D     F  +  S I  IGR  R
Sbjct: 422 CTELMGRGIDFKGVNLVINYD-----FPPTTISYIHRIGRTGR 459


>gi|146096246|ref|XP_001467744.1| ATP-dependent RNA helicase-like protein [Leishmania infantum JPCM5]
 gi|134072110|emb|CAM70809.1| putative ATP-dependent RNA helicase-like protein [Leishmania
           infantum JPCM5]
 gi|322501711|emb|CBZ36792.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 584

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +   +++L E +    + +  MH+++   +R E +   RLGK  VLV   LL  
Sbjct: 379 VLVFVQSVERSKELYEEIRAEGLHMAIMHAKMTVEQREETVLQFRLGKIWVLVTTELLAR 438

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G V   D     F  +  S I  +GR  R
Sbjct: 439 GIDFKNVGTVINFD-----FPATVDSYIHRVGRTGR 469


>gi|54296975|ref|YP_123344.1| transcription-repair coupling factor [Legionella pneumophila str.
           Paris]
 gi|53750760|emb|CAH12167.1| Transcription-repair coupling factor [Legionella pneumophila str.
           Paris]
          Length = 1153

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R+ +DL   + E  I+  +     + LERI  + D    +F+VLV   ++  G+DIP  
Sbjct: 826 ERVCQDLEALVPEAKIQSAHGQMRERQLERI--MSDFYHHRFNVLVCTTIIETGIDIPTA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             + I  ADK G       L Q  GR  R+ +     YA  +T + +L   +  +R E
Sbjct: 884 NTIIIDRADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPNEKLLTPDAVKRLE 934


>gi|11513342|pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
           Eif4a
          Length = 165

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD I++      + ++   T+R  E+LT  L      V  ++S++   ER  I+++ R
Sbjct: 23  DLYDSISVT-----QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR 77

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   +L+  +LL  G+D+ +  LV   D  A+KE ++
Sbjct: 78  SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 115


>gi|89092720|ref|ZP_01165673.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89083232|gb|EAR62451.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 427

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+  ++LT+YL +  I    +H E    ER+ ++ +   G   VLV  ++   G
Sbjct: 250 LVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGDLHVLVATDVAARG 309

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDI     V   D   +       + +  IGR  R
Sbjct: 310 LDIESLPYVVNYDLPNQ-----PEAYVHRIGRTGR 339


>gi|329121361|ref|ZP_08249987.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
 gi|327469770|gb|EGF15236.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
          Length = 497

 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TKR A+++TE L +R      +H ++   +R  +IR  + G  D LV  ++   G
Sbjct: 251 IVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIRQFKEGTIDFLVATDVAARG 310

Query: 646 LDIPECGLVAILDAD 660
           LDI   G+  + + D
Sbjct: 311 LDI--SGVTHVYNFD 323


>gi|325182937|emb|CCA17392.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
 gi|325189887|emb|CCA24367.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 1653

 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 27/124 (21%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN- 681
           EII + + G  +VLV   +  EGLDI +  L+ + D      + S   LIQ +GR  R  
Sbjct: 581 EIITNFKAGTINVLVATCIAEEGLDIGQVDLIVLYDT-----VTSPVRLIQRMGRTGRKR 635

Query: 682 VNSKVILY---------------ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           + + VIL                A  ITK++      TT+  + +LE  K   + P+SV 
Sbjct: 636 IGNVVILVTEGDEEKKLQRSLSNARGITKAL------TTKALKNKLEFAKCPRMLPESVT 689

Query: 727 EKIM 730
            +++
Sbjct: 690 PQLV 693


>gi|313892323|ref|ZP_07825915.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
           UPII 345-E]
 gi|313119182|gb|EFR42382.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
           UPII 345-E]
          Length = 491

 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TKR A+++TE L +R      +H ++   +R  +IR  + G  D LV  ++   G
Sbjct: 245 IVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIRQFKEGTIDFLVATDVAARG 304

Query: 646 LDIPECGLVAILDAD 660
           LDI   G+  + + D
Sbjct: 305 LDI--SGVTHVYNFD 317


>gi|330934775|ref|XP_003304700.1| hypothetical protein PTT_17349 [Pyrenophora teres f. teres 0-1]
 gi|311318582|gb|EFQ87201.1| hypothetical protein PTT_17349 [Pyrenophora teres f. teres 0-1]
          Length = 1322

 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 100/229 (43%), Gaps = 20/229 (8%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYL--YERNIRVRYM-------HSEVKTL-ERIEI 624
           ++ A     RI++    +  AE++   L  +E  IR R         +SE  T  +++E 
Sbjct: 710 VDGAPPSQTRIMVFAHFRDSAEEIARILKRHEPMIRPRIFVGQAHGKNSEGMTQKDQLEA 769

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +   ++G+F+ L+  ++  EGLDI E  L+   D+       S   ++Q +GR  R    
Sbjct: 770 VEKFKIGEFNTLIATSIGEEGLDIGEVDLIICYDSKA-----SPIRMLQRMGRTGRKRQG 824

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV-IDPILLEDAAT 743
           ++++      +         +  + ++L  N  H    + V  +I+   + P++  D   
Sbjct: 825 RIVMLQMQGKEENDANKANDSYLKMQELIANGTHFNFHEDVSRRILPSDVKPVV--DRRV 882

Query: 744 TNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNL-NFEEAARIRDEI 790
            +I + ++QQ  L   K     K   K+ H+  D +  F  A R+ +EI
Sbjct: 883 VDIPVENSQQDWLPVPKKGRRTKKPPKKFHMPDDVITGFVTAGRMGEEI 931


>gi|297675280|ref|XP_002815614.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Pongo abelii]
          Length = 725

 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 543 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRYGKCPVLVATSVAA 602

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 603 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 646


>gi|296331147|ref|ZP_06873621.1| primosome assembly protein PriA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674302|ref|YP_003865974.1| primosomal replication factor Y (primosomal protein N') [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151791|gb|EFG92666.1| primosome assembly protein PriA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412546|gb|ADM37665.1| primosomal replication factor Y (primosomal protein N') [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 805

 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 15/102 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+R+ E+LT+ L   N RV  M  +V T  R     +++     GK D+L+G  ++ +GL
Sbjct: 565 TQRVEEELTKVL--PNARVIRM--DVDTTSRKGAHEKLLSAFGEGKADILLGTQMIAKGL 620

Query: 647 DIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           D P   LV +L AD    +       ++   L Q  GRA R+
Sbjct: 621 DFPNVTLVGVLSADTTLHIPDFRSAEKTFQLLTQVSGRAGRH 662


>gi|295096197|emb|CBK85287.1| transcription-repair coupling factor [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 1148

 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 56/300 (18%), Positives = 133/300 (44%), Gaps = 43/300 (14%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TG+     +A++ E    P +++AP+   A +L+ E + F   +++ + ++ ++    +
Sbjct: 22  LTGAACATLVAEIAERHPGPVVLVAPDMQNALRLHDEIRQF--TDSLVFSLADWETLPYD 79

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           ++ P  +    + S++  Q+  M+         +L++R     V   S ++G   V    
Sbjct: 80  SFSPHQEIISSRLSTLY-QLPTMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV---- 129

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
                +K G  + +  L   L    Y+  D  +  G +   G  ++++P    D  +R+ 
Sbjct: 130 -----MKKGQRLSRDALRVQLDGAGYRHVDQVMEHGEYATRGALLDLYPMG-SDRPYRLD 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            F ++I+ +  F   T + +  V++I +     +    PT  TA++  + + + R  +++
Sbjct: 184 FFDDEIDSLRVFDADTQRTLEEVDSINLLPAHEF----PTDKTAIELFRSQWRDRF-DVK 238

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
           +     +A+ + Q++        + G+  +   Y + L      EP P LF Y P ++L+
Sbjct: 239 R-----DAEHIYQQV--------SKGTLPAGIEYWQPLFF---NEPLPALFSYFPANTLI 282


>gi|257080476|ref|ZP_05574837.1| primosomal protein N [Enterococcus faecalis E1Sol]
 gi|256988506|gb|EEU75808.1| primosomal protein N [Enterococcus faecalis E1Sol]
          Length = 810

 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGQGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|254774025|ref|ZP_05215541.1| hypothetical protein MaviaA2_05024 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 1201

 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           V L +G  +E + +++ LV+  Y R D+   RG F V G  +++FP   E    RV  +G
Sbjct: 136 VTLSVGQEIEFEHVIARLVELAYSRVDMVGRRGEFAVRGGILDVFPPTAEHPV-RVEFWG 194

Query: 355 NDIEEISEF 363
           +++ E+  F
Sbjct: 195 DEVSEMRMF 203


>gi|156057349|ref|XP_001594598.1| hypothetical protein SS1G_04405 [Sclerotinia sclerotiorum 1980]
 gi|160419160|sp|A7EGG4|PRP28_SCLS1 RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|154702191|gb|EDO01930.1| hypothetical protein SS1G_04405 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 816

 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 19/124 (15%)

Query: 108 RLIQSD-NPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS 166
           R+ + D N   K G I  P RSWS +   K +     Q  Y    D+P+A+ +    I  
Sbjct: 359 RIFKEDFNISTKGGAIPNPMRSWSESKLPKRLLDVINQVGY----DEPSAVQRAAIPIAL 414

Query: 167 REKVQLLLGVTGSGKT--FTMAKVIEAMQRP------------AIVMAPNKILAAQLYSE 212
           + +  + + VTGSGKT  F +  ++   + P            AI++AP + LA Q+  E
Sbjct: 415 QARDLIGVAVTGSGKTAAFLLPLLVYISELPPLNEFTKNDGPYAIILAPTRELAQQIEVE 474

Query: 213 FKNF 216
            K F
Sbjct: 475 AKKF 478


>gi|28302109|gb|AAL87139.2|AF479820_1 DEAD box RNA helicase Vasa [Cyprinus carpio]
          Length = 691

 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R G+  VLV  ++  
Sbjct: 508 RTMVFVETKRSADFIATFLCQEKMSTTSIHGDREQREREKALSDFRTGQCPVLVATSVAA 567

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDI +   V   D        S    +  IGR  R  N
Sbjct: 568 RGLDIEQVQHVVNFD-----LPSSIDEYVHRIGRTGRCGN 602


>gi|70938767|ref|XP_740015.1| eukaryotic initiation factor [Plasmodium chabaudi chabaudi]
 gi|56517431|emb|CAH80551.1| eukaryotic initiation factor, putative [Plasmodium chabaudi
           chabaudi]
          Length = 336

 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   + L + + E N  V  MH+ +   ER +I+   R  K+ VL+  ++   GLD+ E
Sbjct: 211 TKLKVDWLAKKMQESNFTVCKMHAGMSQSERDDIMLKFRQCKYRVLISTDIWGRGLDVHE 270

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        S+ S I  IGR+ R
Sbjct: 271 VSLVVNYDLPN-----SRESYIHRIGRSGR 295


>gi|33602793|ref|NP_890353.1| transcription-repair coupling factor [Bordetella bronchiseptica
           RB50]
 gi|33577235|emb|CAE35792.1| transcription-repair coupling factor [Bordetella bronchiseptica
           RB50]
          Length = 1151

 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 36/186 (19%), Positives = 74/186 (39%), Gaps = 13/186 (6%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           GSG  + +A +     +P +V+  + + A +L  E   F P   V      ++    +A+
Sbjct: 34  GSGDGWLLADLARQAGKPLVVLTADPLEAQRLADEIPQFAPELRVRQLPD-WETLPYDAF 92

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
            P  D   ++  +++  ++           +  D + V   + +Y +      +      
Sbjct: 93  SPHQDLISQRLRTLHALMN-----------QGVDILTVPVTTALYRLAPPAFLAAYTFSF 141

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           K  D +++  L + L    Y         G F + G  I++FP     V +R+ +F ++I
Sbjct: 142 KQKDRLDEAALRAQLTLANYSHVTQVTAPGEFCLRGGLIDLFPMG-SVVPYRLDLFDDEI 200

Query: 358 EEISEF 363
           E I  F
Sbjct: 201 ESIRSF 206


>gi|299538292|ref|ZP_07051577.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
 gi|298726494|gb|EFI67084.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
          Length = 507

 Score = 41.2 bits (95), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 7/149 (4%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++SA  +  DV   +    Q  L I+    TKR  ++L + L  R      +H ++   +
Sbjct: 220 VKSAEREKFDVLSRLLNVHQPELAIIFG-RTKRRVDELAQALSIRGYLAEGIHGDLSQAK 278

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI ++R  +  K D+LV  ++   GLDI   G+  + + D     +   S +  IGR  R
Sbjct: 279 RISVLRQFKENKIDILVATDVAARGLDI--SGVTHVYNFD---IPQDPESYVHRIGRTGR 333

Query: 681 NVNSKVILYADTITKSIQLAI-DETTRRR 708
              S + +   T  +   L I +ETT++R
Sbjct: 334 AGKSGLAVTFVTPREMGYLRIVEETTKKR 362


>gi|257898623|ref|ZP_05678276.1| helicase [Enterococcus faecium Com15]
 gi|257836535|gb|EEV61609.1| helicase [Enterococcus faecium Com15]
          Length = 449

 Score = 41.2 bits (95), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 79/154 (51%), Gaps = 12/154 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++ +YL  + ++V  +H ++   ER  ++R ++  ++  +V  +L   G+DI  
Sbjct: 252 TKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEYQYVVATDLAARGIDIE- 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKSIQLAIDETTRRR 708
            G+  +++A+    L      I  +GR  RN    + + LY+    ++I  AI++     
Sbjct: 311 -GVSHVINAEIPEDL---DFFIHRVGRTGRNGLKGTAITLYSPNDEQAID-AIEKLGVSF 365

Query: 709 E----KQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           E    K  E  K ++ N ++ +EK  +V+DP L+
Sbjct: 366 EPKEIKNGEIVKTYDRNRRTKREKSKDVLDPTLI 399


>gi|194227826|ref|XP_001491482.2| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box
           protein 3, X-chromosomal) (Helicase-like protein 2)
           (HLP2) (DEAD box, X isoform) [Equus caballus]
          Length = 762

 Score = 41.2 bits (95), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 533 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 591

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 592 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 650

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 651 ---NITKDL 656


>gi|195166521|ref|XP_002024083.1| GL22752 [Drosophila persimilis]
 gi|194107438|gb|EDW29481.1| GL22752 [Drosophila persimilis]
          Length = 597

 Score = 41.2 bits (95), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +QGL+  +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G   VL+
Sbjct: 366 RQGLQPPVLVFVQSKDRAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFREGNIWVLI 425

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+  G+D     LV   D     F  +  S I  IGR  R
Sbjct: 426 CTELMGRGIDFKGVNLVINYD-----FPPTTISYIHRIGRTGR 463


>gi|119475372|ref|ZP_01615725.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2143]
 gi|119451575|gb|EAW32808.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2143]
          Length = 697

 Score = 41.2 bits (95), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 590 LTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           L  + AED  E L     +I+V  +H  +K  E+  I+   +  + D+LV   ++  G+D
Sbjct: 503 LEAQAAEDTCEQLKLALPDIKVALIHGRMKPSEKESIMAAFKANQIDLLVATTVIEVGVD 562

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           +P   L+ I +A++ G     + L Q  GR  R   +   V++Y   + K
Sbjct: 563 VPNASLMIIENAERLGL----SQLHQLRGRVGRGPTASHCVLMYQAPLGK 608


>gi|39996461|ref|NP_952412.1| helicase [Geobacter sulfurreducens PCA]
 gi|39983341|gb|AAR34735.1| helicase, putative [Geobacter sulfurreducens PCA]
          Length = 1041

 Score = 41.2 bits (95), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 8/115 (6%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E ++A+ +G+   +T+   R AE + E   +R I      S + + +  +++  LR G+ 
Sbjct: 548 EPDVASLKGIGFCVTI---RHAEYMAEQFSQRGIPSAPFVSGIDSDQCADLLARLRNGQL 604

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             L  ++ L EG+D+PE   V  L   +     S T  +Q +GR  R+   K  L
Sbjct: 605 TFLFTVDKLSEGVDVPEINTVLFLRPTE-----SLTVFLQQLGRGLRHAPEKECL 654


>gi|330955723|gb|EGH55983.1| transcription-repair coupling factor [Pseudomonas syringae Cit 7]
          Length = 188

 Score = 41.2 bits (95), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 21/178 (11%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           A +L  E K F P   V +F  +    YD + P       D   ++ +S+  ++  + H 
Sbjct: 7   AERLEQELKFFAPTLPVLHFPDWETLPYDLFSPHQ-----DIISQRIASLY-RLPELEHG 60

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
                      +VV   + ++ +   +      + L +G  ++ + + + L    Y+  D
Sbjct: 61  ----------VLVVPITTALHRLAPTKFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVD 110

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                G F V G  I++FP     + +R+ +F ++IE +  F P T + I  VE++++
Sbjct: 111 TVYEHGEFTVRGALIDLFPMG-SKLPFRIDLFDDEIETLRTFDPDTQRSIDKVESVRL 167


>gi|325846657|ref|ZP_08169572.1| putative ATP-dependent DNA helicase RecG [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481415|gb|EGC84456.1| putative ATP-dependent DNA helicase RecG [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 659

 Score = 41.2 bits (95), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 596 EDLTEYLYER------NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           E+  E LY+R      + R+  +H ++K  E+  I+++   GK DVL+   ++  G+D+ 
Sbjct: 469 ENSVENLYKRYKTKFTDKRIEKLHGKLKADEKENILKEFSDGKIDVLISTTVIEVGIDVS 528

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
               + I +A+  G     +SL Q  GR  R
Sbjct: 529 NANCMVIYNANNFGL----SSLHQLRGRIGR 555


>gi|300172900|ref|YP_003772065.1| ATP-dependent DNA helicase RecG [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887278|emb|CBL91246.1| ATP-dependent DNA helicase RecG [Leuconostoc gasicomitatum LMG
           18811]
          Length = 676

 Score = 41.2 bits (95), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H  +   E+  ++ D +  +  +LV   ++  G+D+P   ++ ILDAD+ G L  
Sbjct: 498 QVGLLHGRLSNDEKKTLMADFKANRIQILVATTVIEVGVDVPNATVMLILDADRFG-LAQ 556

Query: 668 KTSLIQTIGRAARNVNSKVILYAD 691
              L   +GR +R   S  IL AD
Sbjct: 557 LHQLRGRVGRGSR--QSYTILVAD 578


>gi|255712573|ref|XP_002552569.1| KLTH0C07964p [Lachancea thermotolerans]
 gi|238933948|emb|CAR22131.1| KLTH0C07964p [Lachancea thermotolerans]
          Length = 398

 Score = 41.2 bits (95), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK++ + L+  L + N  V  MH ++K  +R  ++ D R
Sbjct: 257 DLYDSLTIT-----QCVIFCNTKKVVDWLSSKLLQANFAVASMHGDMKQEDRDRVMNDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        +  + I  IGR+ R
Sbjct: 312 SGTSRVLISTDVWARGIDVQQVSLVINYD-----LPDNLENYIHRIGRSGR 357


>gi|241172335|ref|XP_002410726.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215494955|gb|EEC04596.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 658

 Score = 41.2 bits (95), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V  K  AE+L   L  ++  V  +H ++   +R ++I   +   F +LV  ++   
Sbjct: 432 VLIFVTKKANAEELAANLKTKDHNVALLHGDMDQNDRTKVIASFKKKDFPILVATDVAAR 491

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           GLDIP    V   D  ++  + + T  +   GRA 
Sbjct: 492 GLDIPHVRTVVNYDIARD--IDTHTHRVGRTGRAG 524


>gi|195977526|ref|YP_002122770.1| ATP-dependent DNA helicase RecG [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974231|gb|ACG61757.1| ATP-dependent DNA helicase RecG [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 671

 Score = 41.2 bits (95), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L +Y ++ +  +  MH ++K  ++  I++  +  + DVLV   ++  G+++P   ++ I
Sbjct: 487 ELKDY-FKASASIALMHGKMKADDKEMIMQRFKAKEIDVLVSTTVIEVGVNVPNATIMLI 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           ++AD+ G     + L Q  GR  R    S  IL AD  T S
Sbjct: 546 MNADRFGL----SQLHQLRGRVGRGSKQSYAILVADPKTDS 582


>gi|193787510|dbj|BAG52716.1| unnamed protein product [Homo sapiens]
          Length = 575

 Score = 41.2 bits (95), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 393 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAA 452

Query: 644 EGLDI 648
            GLDI
Sbjct: 453 RGLDI 457


>gi|150021559|ref|YP_001306913.1| type III restriction enzyme, res subunit [Thermosipho melanesiensis
           BI429]
 gi|149794080|gb|ABR31528.1| type III restriction enzyme, res subunit [Thermosipho melanesiensis
           BI429]
          Length = 698

 Score = 41.2 bits (95), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+   +RIE++ +   G   VLV + +L EG+D+PE  +  I+ + K     +    IQ 
Sbjct: 579 ELSNKQRIEVLNNFGEGIIQVLVAMKILDEGVDVPESKIAIIMSSSK-----NPREFIQR 633

Query: 675 IGRAAR-NVNSKVILYADTITK 695
           IGR  R + N K     D ITK
Sbjct: 634 IGRILRVSENKKYSYIYDIITK 655


>gi|17065030|gb|AAL32669.1| RNA helicase, DRH1 [Arabidopsis thaliana]
          Length = 619

 Score = 41.2 bits (95), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I  + + G ++++   TKRM + LT  L  R      +H +    ER  ++   R G+
Sbjct: 394 EQILRSQEPGSKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGR 452

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             VLV  ++   GLD+ +  + A+++ D   F       +  IGR  R
Sbjct: 453 TPVLVATDVAARGLDVKD--IRAVVNYD---FPNGVEDYVHRIGRTGR 495


>gi|320449791|ref|YP_004201887.1| dead/deah box helicase domain-containing protein [Thermus
           scotoductus SA-01]
 gi|320149960|gb|ADW21338.1| dead/deah box helicase domain protein [Thermus scotoductus SA-01]
          Length = 745

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 7/111 (6%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++GLR L+    ++ AE +  Y    + RVR   +     ER  +   L+ G+  VLV 
Sbjct: 283 AEEGLRGLIFTNARKSAELIARY--AAHPRVRPYRAGYTAKERRRLEEALKTGEVQVLVS 340

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            + L  G+DI E   V ++     G+  S ++  Q  GRA R     +++Y
Sbjct: 341 TSALELGVDIGELDAVVLV-----GYPGSISAFWQRAGRAGRGSRRALVVY 386


>gi|269838956|ref|YP_003323648.1| ATP-dependent DNA helicase, RecQ family [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269790686|gb|ACZ42826.1| ATP-dependent DNA helicase, RecQ family [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 563

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 89/245 (36%), Gaps = 69/245 (28%)

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL----RPT 524
           SL  VDE+H                   ++E+G+      D RP   +    +    RP 
Sbjct: 133 SLFVVDEAHC------------------ISEWGY------DFRPSYLQLGEVVEEVGRPP 168

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV------------------------E 560
            + ++AT   W        + + I R  G+ DP V                        +
Sbjct: 169 VLALTATATPW--------VRQDIARTLGMRDPLVVAHGFDRPNLFLQVHRLEQHEDERQ 220

Query: 561 IRSA--RTQVEDVYDEINLAAQQGLRI--LLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           +  A    QVE   +E++   ++ L    L+   T R AE+   +L E  I   Y H   
Sbjct: 221 VLEALLSGQVEAYTEEVSARIRRALEGPGLIYTNTTRAAEETAGWLKEMGIPAGYYHGRR 280

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           +  ER  + +D   GK  V+V  N    G+D P+   V   DA       S  +  Q  G
Sbjct: 281 RKSERERVQQDFMEGKLRVVVATNAFGMGIDKPDVRFVIHRDAPA-----SLEAYYQEAG 335

Query: 677 RAARN 681
           RA R+
Sbjct: 336 RAGRD 340


>gi|262203090|ref|YP_003274298.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262086437|gb|ACY22405.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 752

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+  +H  +   E+ E++     G+ D+LV   ++  G+D+P   ++ I+DA++ G    
Sbjct: 570 RIGLLHGRLPADEKNEVMDAFGRGELDILVATTVIEVGVDVPNATMMVIVDAERFGV--- 626

Query: 668 KTSLIQTIGRAARNVNSKVILY---ADTITKSIQ 698
            + L Q  GR  R  ++ + L    A  +++S+Q
Sbjct: 627 -SQLHQLRGRVGRGKHAGLCLLMTSAPQVSQSMQ 659


>gi|302422698|ref|XP_003009179.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102]
 gi|261352325|gb|EEY14753.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102]
          Length = 1510

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++  I   R G+F+ L+  ++  EG+DI +C +V   D        S    IQ+ GR A
Sbjct: 538 EQVMTITKFRRGEFNCLLATSVAEEGIDIADCKIVIRFD-----LFNSVIQYIQSKGR-A 591

Query: 680 RNVNSKVILYAD 691
           R++NS+ I  A+
Sbjct: 592 RHLNSEYICMAE 603


>gi|170578019|ref|XP_001894230.1| eukaryotic initiation factor 4A [Brugia malayi]
 gi|158599270|gb|EDP36940.1| eukaryotic initiation factor 4A, putative [Brugia malayi]
          Length = 413

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y  +N+      + ++   T+R  + L   + +    V  MH E++  ER  I+R+ R
Sbjct: 272 DLYSTVNVT-----QAVIFCNTRRKVDYLAAQMSKEKYTVSCMHGEMEQNERDVIMREFR 326

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  +LL  G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 327 SGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 372


>gi|154323886|ref|XP_001561257.1| hypothetical protein BC1G_00342 [Botryotinia fuckeliana B05.10]
 gi|150842571|gb|EDN17764.1| hypothetical protein BC1G_00342 [Botryotinia fuckeliana B05.10]
          Length = 1170

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++E IR  + G  +V+V  ++  EGLDI E  L+   D+       S   ++Q +GR  
Sbjct: 631 KQLETIRKFKAGGINVIVATSIGEEGLDIGEVDLIVCYDSSS-----SPIRMLQRMGRTG 685

Query: 680 RNVNSKVIL 688
           R    K++L
Sbjct: 686 RKRAGKIVL 694


>gi|146329097|ref|YP_001209598.1| transcription-repair coupling factor [Dichelobacter nodosus
           VCS1703A]
 gi|146232567|gb|ABQ13545.1| transcription-repair coupling factor [Dichelobacter nodosus
           VCS1703A]
          Length = 1117

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 9/115 (7%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R+A  L+E L +  I V +     + LE+I  ++D     +D+LV   ++  G+DIP   
Sbjct: 790 RIARALSEQLPQARIAVAHGQLRERALEKI--MQDFYNRHYDLLVASTIIESGIDIPNAN 847

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
            + I  ADK G       L Q  GR  R+ +     YA  IT + Q    +  RR
Sbjct: 848 TIIINRADKLGL----AQLHQLRGRVGRSHHQA---YAYLITPAWQTLNKDAQRR 895


>gi|148235554|ref|NP_001080632.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [Xenopus laevis]
 gi|28436904|gb|AAH46696.1| Ddx19-prov protein [Xenopus laevis]
          Length = 487

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 8/113 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++Y  I +A     + ++   T++ A  L   LY+   +V  +  E+   +R  +I   R
Sbjct: 334 NIYGSITIA-----QAMIFCHTRKTASWLAGELYKEGHQVAMLSGEMMVEQRAAVIDRFR 388

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            GK  VLV  N+   G+D+ +  +V   D   DK+G   ++T L   IGR  R
Sbjct: 389 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYL-HRIGRTGR 440


>gi|78485512|ref|YP_391437.1| transcription-repair coupling factor [Thiomicrospira crunogena
           XCL-2]
 gi|78363798|gb|ABB41763.1| transcription-repair coupling factor [Thiomicrospira crunogena
           XCL-2]
          Length = 1159

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 108/294 (36%), Gaps = 42/294 (14%)

Query: 184 TMAKVIEAMQRPAI-VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242
            +A + +A   P + V+    +  A  YSE   FF            DY  P    P  +
Sbjct: 34  ALALIEKAQNAPGLAVLLTENMAEANKYSELLRFFAET---------DY--PILSFPEWE 82

Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC-IYGIGSVESYSQMIVQLKIGD 301
           T    + S ++ I   R      L      +++  VS  I  +   +   +    L+ G+
Sbjct: 83  TLPYDQFSPHQDIISQRLKTLYQLPSTKQGLLILPVSTLIQKVVPHQFIEKYTFLLQCGE 142

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
           +V+       L    Y+R    +  G F V G  I+++P       +R+ +F ++IE I 
Sbjct: 143 TVDIDAFTRQLESSGYQRVSQVMEHGEFAVRGSIIDLYPMG-SRTPYRLDLFDDEIETIR 201

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
            F P T + + ++E I++     Y                       +L  EG  L  Q 
Sbjct: 202 SFDPETQRSVDSIEQIELLPAKEY-----------------------DLTPEGISLFRQN 238

Query: 422 LEQRITYDL---EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
                  D    ++  +    Q+++    YL+  +      T F+Y+P D L F
Sbjct: 239 FRSHFGDDARNSQLYRSVKDGQTVDGLEYYLSLFHSN--IATFFDYLPSDCLFF 290



 Score = 40.8 bits (94), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 13/128 (10%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++MAE++   L E   +V   H ++   E  +++++    +F++LV   ++  G+DIP  
Sbjct: 836 EQMAEEIQALLPE--AKVETAHGQMHERELEQVMQNFYHRRFNILVCTTIIETGIDIPTA 893

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
             + I  ADK G       L Q  GR  R+ + K   Y  T  K++       T+  EK+
Sbjct: 894 NTILIHRADKFGL----AQLHQLRGRVGRS-HHKAYAYLFTAGKAL------MTKDAEKR 942

Query: 712 LEHNKKHN 719
           L    KH+
Sbjct: 943 LTAIAKHD 950


>gi|46199206|ref|YP_004873.1| DNA helicase recG [Thermus thermophilus HB27]
 gi|46196831|gb|AAS81246.1| DNA helicase recG [Thermus thermophilus HB27]
          Length = 770

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  +   E+ E++   R G +D+LV   ++  G+DIP+  L+ + +A++ G  
Sbjct: 588 GVRLALLHGRMPAREKDEVMEAFRRGDYDLLVSTTVVEVGVDIPKATLIIVENAERFGL- 646

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R 
Sbjct: 647 ---AQLHQLRGRVGRG 659


>gi|47226371|emb|CAG09339.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1038

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 19/109 (17%)

Query: 584 RILLTVLTKRMAEDLTEYLYER------NIRVRYM-----HSEVKTL---ERIEIIRDLR 629
           R ++   T+R A  LT+++ E       +++  Y+      S VK +   E+ +++   R
Sbjct: 703 RGIIFTKTRRGAIALTQWIRENSKFADMDVKPAYVIGGGDQSVVKPMTAAEQKDVLNKFR 762

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            G+ ++L+  ++  EGLDIP+C  V      + G + ++ S+IQT GR 
Sbjct: 763 NGEVNLLIATSVAEEGLDIPKCNFVI-----RYGHVANEISMIQTEGRG 806


>gi|68073071|ref|XP_678450.1| helicase  [Plasmodium berghei strain ANKA]
 gi|56498921|emb|CAH99688.1| helicase, truncated, putative [Plasmodium berghei]
          Length = 187

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RI++ V TKR A+ +T+ L    +    +H + K  ER  ++ D + GK  +L+  ++  
Sbjct: 21  RIIVFVETKRSADFITKALRLEGMPALCIHGDKKQDERRWVLNDFKTGKSPILIATDVAS 80

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLDI     V   D     F       +  IGR  R
Sbjct: 81  RGLDIKNVKFVINYD-----FPNQIEDYVHRIGRTGR 112


>gi|322494146|emb|CBZ29443.1| ATP-dependent RNA helicase-like protein,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 584

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +   +++L E +    + +  MH+++   +R E +   RLGK  VLV   LL  
Sbjct: 379 VLVFVQSVERSKELYEEIRAEGLHMAIMHAKMTVEQREETVLQFRLGKIWVLVTTELLAR 438

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G V   D     F  +  S I  +GR  R
Sbjct: 439 GIDFKNVGTVINFD-----FPATVDSYIHRVGRTGR 469


>gi|317404549|gb|EFV84956.1| primosomal protein [Achromobacter xylosoxidans C54]
          Length = 701

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R+ E L E   E  I      S  K      +   +  G+ D+LVG  ++ +G D   
Sbjct: 456 TQRVEEHLAELFPEARILRIDADSTRKKGSAEALFASVHAGEVDILVGTQMVSKGHDFAR 515

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAARN-VNSKVIL 688
            GLV +L+ D   F        R    L+Q  GRA R+  N +VI+
Sbjct: 516 LGLVGVLNPDSALFAHDFRAPERLFAQLMQVAGRAGRHQGNGQVII 561


>gi|315179704|gb|ADT86618.1| hypothetical protein vfu_A01441 [Vibrio furnissii NCTC 11218]
          Length = 536

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 33/67 (49%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TKR A  L  +L E  I+   +H       R   + + + G+  VLV  ++  
Sbjct: 245 QVLVFTRTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFKSGELRVLVATDIAA 304

Query: 644 EGLDIPE 650
            G+DIP+
Sbjct: 305 RGIDIPQ 311


>gi|315050970|ref|XP_003174859.1| DEAD box family helicase [Arthroderma gypseum CBS 118893]
 gi|311340174|gb|EFQ99376.1| DEAD box family helicase [Arthroderma gypseum CBS 118893]
          Length = 654

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLV 654
           DLT    E  +  RY+  +     R + +   R  +F VLV   L  EG DIP  +C L+
Sbjct: 309 DLTAKFREFGVDARYITGQTPKDVRAKELEAFRNYEFPVLVNCGLFTEGTDIPNIDCVLL 368

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR 680
           A          RSK  LIQ IGR  R
Sbjct: 369 ARP-------TRSKNLLIQMIGRGLR 387


>gi|262192455|ref|ZP_06050606.1| helicase-related protein [Vibrio cholerae CT 5369-93]
 gi|262031614|gb|EEY50201.1| helicase-related protein [Vibrio cholerae CT 5369-93]
          Length = 779

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 68/143 (47%), Gaps = 12/143 (8%)

Query: 541 QGIIVEQIIRPTGLVDPPV---EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           Q +  ++I    G  DP     ++ ++R + E VY E    A++  R L   ++K+ A+ 
Sbjct: 202 QAVNYQEIPWRNGKFDPNTLDNKLATSR-RAEHVYREWQ--AKKQTRTLAFCVSKKHADF 258

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           + +Y   + I    ++S+   + R + ++ L  GK +++  ++L  EG D+P    + + 
Sbjct: 259 MAQYFVAKGIHAIAVYSD-SAVRRNQALQWLDQGKIEIIFSVDLFNEGTDLPSIDTILMA 317

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
              +     SK   +Q +GR  R
Sbjct: 318 RPTE-----SKILFLQQLGRGLR 335


>gi|240013980|ref|ZP_04720893.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18]
 gi|240121547|ref|ZP_04734509.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1]
          Length = 462

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+DIP 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDVAARGIDIPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|254038860|ref|ZP_04872912.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|226838825|gb|EEH70852.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
          Length = 623

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL    +   AEDL ++   + +RV  +HSE+    + +   ++     DV++ +N+L 
Sbjct: 284 KILAVGCSITHAEDLAKWYEAKGLRVVIIHSEMDDEVKADAFLNIENHNADVVISVNMLM 343

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EG D     ++AI         RS  +  Q +GR  R +
Sbjct: 344 EGYDHKYLSILAIFRP-----YRSLNAFAQVVGRILRAI 377


>gi|241958200|ref|XP_002421819.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223645164|emb|CAX39763.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 557

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TKR  +++T YL         +H +    ER  ++ + R GK  ++V  ++  
Sbjct: 366 KILVFASTKRTCDEITTYLRSDGWPALAIHGDKDQSERDWVLDEFRKGKTSIMVATDVAA 425

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+D+   G+  +++ D  G +      +  IGR  R   S   +
Sbjct: 426 RGIDVK--GITHVINYDMPGNIE---DYVHRIGRTGRGGASGTAI 465


>gi|294660132|ref|XP_462573.2| DEHA2G23782p [Debaryomyces hansenii CBS767]
 gi|218512022|sp|Q6BGU8|DBP8_DEBHA RecName: Full=ATP-dependent RNA helicase DBP8
 gi|199434486|emb|CAG91086.2| DEHA2G23782p [Debaryomyces hansenii]
          Length = 441

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 11/99 (11%)

Query: 586 LLTVLTKRMA--EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           L  + T R A  E L   L +   RV  +HSE+   ER   +   + G   +L+  ++  
Sbjct: 255 LSIIFTNRTATAELLRRTLRKLEFRVASLHSEMPQTERTNSLHRFKAGAAKILIATDVAS 314

Query: 644 EGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            GLDIP   LV   D  AD + F       I  +GR AR
Sbjct: 315 RGLDIPTVELVVNYDIPADADDF-------IHRVGRTAR 346


>gi|189500980|ref|YP_001960450.1| ATP-dependent DNA helicase RecG [Chlorobium phaeobacteroides BS1]
 gi|189496421|gb|ACE04969.1| ATP-dependent DNA helicase RecG [Chlorobium phaeobacteroides BS1]
          Length = 719

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 11/110 (10%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H ++++ E+  ++   R G  D+LVG  ++  G+D+P   ++ I  A++ G  
Sbjct: 535 GLRIGLLHGQMRSEEKESVMERFRSGTLDLLVGTTVIEVGVDVPNASVMVIEHAERFGL- 593

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
                L Q  GR  R                +  A+    R R   +E N
Sbjct: 594 ---AQLHQLRGRVGRGAEQSYCFL-------LHAAVGGDARERLAAMERN 633


>gi|170745607|ref|YP_001776829.1| type III restriction protein res subunit [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659261|gb|ACB28313.1| type III restriction protein res subunit [Methylobacterium
           radiotolerans JCM 2831]
          Length = 609

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 14/121 (11%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A+   L+I+ + L       + +   ER +R  Y+HS         I+R L     DV+V
Sbjct: 289 ASNPNLKIIASALNYEHCRQVVQAYNERGLRAAYIHSRDDQPANRAILRRLEANDLDVIV 348

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---------NVNSKVIL 688
            +  L EG D P   + A+            +  +Q +GR  R          VN  V++
Sbjct: 349 QVRKLGEGFDHPLLAVAAVF-----SIFGQLSPFVQFVGRIMRVVRQNAPNDPVNRGVVV 403

Query: 689 Y 689
           Y
Sbjct: 404 Y 404


>gi|158289216|ref|XP_310969.4| AGAP000169-PA [Anopheles gambiae str. PEST]
 gi|157018948|gb|EAA06209.4| AGAP000169-PA [Anopheles gambiae str. PEST]
          Length = 525

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+I++IR  R G  + L+   +  EG+D+ E  L+   D  K     + T  +Q +GR  
Sbjct: 408 EQIDVIRQFRAGTINTLIATCVAEEGIDVGEVDLIVCFDIAK-----NPTRFVQRVGRTG 462

Query: 680 RNVNSKVIL 688
           R    +V++
Sbjct: 463 RQRVGRVLM 471


>gi|148643247|ref|YP_001273760.1| Hef nuclease [Methanobrevibacter smithii ATCC 35061]
 gi|222445478|ref|ZP_03607993.1| hypothetical protein METSMIALI_01117 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349960|ref|ZP_05975377.1| putative ATP-dependent RNA helicase [Methanobrevibacter smithii DSM
           2374]
 gi|148552264|gb|ABQ87392.1| ERCC4-like helicase [Methanobrevibacter smithii ATCC 35061]
 gi|222435043|gb|EEE42208.1| hypothetical protein METSMIALI_01117 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860743|gb|EFC93041.1| putative ATP-dependent RNA helicase [Methanobrevibacter smithii DSM
           2374]
          Length = 772

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 12/123 (9%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ EII+  ++G++DVL+  ++  EG+DIP   LV + +      + S+  +IQ  GR  
Sbjct: 426 EQKEIIKAFKIGEYDVLLSTSVAEEGIDIPAVDLVILYEP-----VPSEVRMIQRRGRTG 480

Query: 680 RNVNS--KVILYADTITKSIQLAIDETTRRREKQL-EHNKKHNINPQSVK----EKIMEV 732
           R  +   KV++   T  +    A     RR + QL + +    +N  +++    EK ++V
Sbjct: 481 RKRSGRVKVLITNGTRDEGYYWASVNKERRMKHQLIDPDVLEELNSNAIERMENEKRVKV 540

Query: 733 IDP 735
           +DP
Sbjct: 541 LDP 543


>gi|146298962|ref|YP_001193553.1| transcription-repair coupling factor [Flavobacterium johnsoniae
           UW101]
 gi|146153380|gb|ABQ04234.1| transcription-repair coupling factor [Flavobacterium johnsoniae
           UW101]
          Length = 1121

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 8/109 (7%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N RV   H ++   +  E++     G FDVLV   ++  GLD+P    + I +A+  G  
Sbjct: 796 NARVGIGHGQMDGAKLEELMLGFMNGDFDVLVATTIIESGLDVPNANTIFINNANNFGL- 854

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
              + L Q  GR  R+ N K   Y      S   ++ E  R+R + LE 
Sbjct: 855 ---SDLHQMRGRVGRS-NKKAFCYFICPPYS---SMTEDARKRIQALEQ 896



 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 48/247 (19%), Positives = 103/247 (41%), Gaps = 17/247 (6%)

Query: 159 QLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
           Q+  G+    ++++ + G+ GS  +F +  V +  + P +++  NK  AA   ++ +   
Sbjct: 18  QIASGLLEGNQIKMNISGLLGSAVSFIIRSVFKKTELPFLIVLDNKEEAAYYLNDLEQMI 77

Query: 218 PHNAVEYF-VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
               V ++ VS+   YQ    V  TD         N  +        R    +   ++V+
Sbjct: 78  GEQDVLFYPVSFRRPYQ----VDETD---------NANVLLRAEVLNRINSRKKPAVIVT 124

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
               ++  + + +   +  +++ + D +    +   L + ++KR D     G F V G  
Sbjct: 125 YPEALFEKVVTRQQLDKNTLKVSLNDKISIDFINEVLFEYEFKRVDFITEPGEFSVRGGI 184

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +++F S   D  +R+  FGN+++ I  F   T   +   + I I  N      +    + 
Sbjct: 185 VDVF-SFSNDHPYRIEFFGNEVDSIRTFDVETQLSVETHKKITIIPNVENKIFQENRESF 243

Query: 396 MKYIKEE 402
           + YI E+
Sbjct: 244 LDYIAEK 250


>gi|7582292|gb|AAF64266.1|AF208852_1 BM-010 [Homo sapiens]
 gi|119598579|gb|EAW78173.1| eukaryotic translation initiation factor 4A, isoform 2, isoform
           CRA_b [Homo sapiens]
 gi|119598582|gb|EAW78176.1| eukaryotic translation initiation factor 4A, isoform 2, isoform
           CRA_b [Homo sapiens]
 gi|119598584|gb|EAW78178.1| eukaryotic translation initiation factor 4A, isoform 2, isoform
           CRA_b [Homo sapiens]
          Length = 312

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 187 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 246

Query: 651 CGLV 654
             LV
Sbjct: 247 VSLV 250


>gi|73965189|ref|XP_861178.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           isoform 2 [Canis familiaris]
          Length = 432

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 237 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 296

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           GLDIP    V   D  ++  + + T  I   GRA 
Sbjct: 297 GLDIPSIKTVINYDVARD--IDTHTHRIGRTGRAG 329


>gi|73540622|ref|YP_295142.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72118035|gb|AAZ60298.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 632

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I+ T  TKR A+ L E L +       +H ++    R   +  LR G   VLV  ++   
Sbjct: 316 IVFTA-TKRDADSLAERLSDTGFAAGALHGDMTQGARNRTLTALRRGNLRVLVATDVAAR 374

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           G+D+P+   V   D  K+         +  IGR  R   S V +
Sbjct: 375 GIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGVAI 413


>gi|62185446|ref|YP_220231.1| putative transcription-repair coupling factor [Chlamydophila
           abortus S26/3]
 gi|62148513|emb|CAH64284.1| putative transcription-repair coupling factor [Chlamydophila
           abortus S26/3]
          Length = 1085

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 19/132 (14%)

Query: 89  KQTREISEQTMTPSVQALARL--IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTD 146
           K++R++SE+++    + L +L   +S  P      I+ PH         +++  F+    
Sbjct: 509 KRSRDLSEKSLVLYAEKLLQLEAQRSTTPAF----IYPPH--------GEEVIKFEESFP 556

Query: 147 YHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAP 201
           Y  + DQ  AI Q+   + S + + +L+ G  G GKT   M   ++A+   QR  IVM P
Sbjct: 557 YEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAVCDGQRQVIVMVP 616

Query: 202 NKILAAQLYSEF 213
             ILA Q Y  F
Sbjct: 617 TTILANQHYETF 628


>gi|329575935|gb|EGG57456.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
           TX1467]
          Length = 457

 Score = 41.2 bits (95), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  +   +H ++   +R+ ++R  + G  D+LV  ++   GLDI  
Sbjct: 190 TKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDI-- 247

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 248 SGVTHVYNYD---IPQDPESYVHRIGRTGR 274


>gi|328911691|gb|AEB63287.1| branch migrating ATP-dependent DNA helicase involved in DNA
           recombination and repair [Bacillus amyloliquefaciens
           LL3]
          Length = 682

 Score = 41.2 bits (95), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           +Y     V  MH ++ + E+ +++R+    +  VLV   ++  G+++P   ++ I DAD+
Sbjct: 497 VYRGKWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADR 556

Query: 662 EGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691
            G     + L Q  GR  R +  S  IL AD
Sbjct: 557 FGL----SQLHQLRGRVGRGDHQSFCILMAD 583


>gi|300741702|ref|ZP_07071723.1| ATP-dependent DNA helicase RecG [Rothia dentocariosa M567]
 gi|300380887|gb|EFJ77449.1| ATP-dependent DNA helicase RecG [Rothia dentocariosa M567]
          Length = 763

 Score = 41.2 bits (95), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 8/88 (9%)

Query: 598 LTEYLYER----NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +T YL +       R+  +H  +   E+  ++     G+ D+LV   ++  G+++P   L
Sbjct: 567 MTAYLKQNPALTGTRIASLHGRMDPEEKTAVMTAFERGEIDILVSTTVIEVGVNVPNATL 626

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARN 681
           + I+DAD+ G     + L Q  GR  R 
Sbjct: 627 MMIMDADRFGI----SGLHQLRGRVGRG 650


>gi|288803318|ref|ZP_06408751.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18]
 gi|288334138|gb|EFC72580.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18]
          Length = 553

 Score = 41.2 bits (95), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K+  + +   L   +I    MHS++   +R +++   + G+ DVLV  +++ 
Sbjct: 229 RVIIFSGSKQKVKQIAGSLNRMHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVS 288

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691
            G+DI +  +V   D   D E +       +  IGR AR + + K I + +
Sbjct: 289 RGIDIDDIAMVINYDVPHDAEDY-------VHRIGRTARADRDGKAITFVN 332


>gi|227551392|ref|ZP_03981441.1| ATP-dependent RNA helicase [Enterococcus faecium TX1330]
 gi|257895994|ref|ZP_05675647.1| helicase [Enterococcus faecium Com12]
 gi|227179511|gb|EEI60483.1| ATP-dependent RNA helicase [Enterococcus faecium TX1330]
 gi|257832559|gb|EEV58980.1| helicase [Enterococcus faecium Com12]
          Length = 449

 Score = 41.2 bits (95), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 79/154 (51%), Gaps = 12/154 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++ +YL  + ++V  +H ++   ER  ++R ++  ++  +V  +L   G+DI  
Sbjct: 252 TKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEYQYVVATDLAARGIDIE- 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKSIQLAIDETTRRR 708
            G+  +++A+    L      I  +GR  RN    + + LY+    ++I  AI++     
Sbjct: 311 -GVSHVINAEIPEDL---DFFIHRVGRTGRNGLKGTAITLYSPNDEQAID-AIEKLGVSF 365

Query: 709 E----KQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           E    K  E  K ++ N ++ +EK  +V+DP L+
Sbjct: 366 EPKEIKNGEIVKTYDRNRRTKREKSKDVLDPTLI 399


>gi|198466271|ref|XP_002135148.1| GA23405 [Drosophila pseudoobscura pseudoobscura]
 gi|198150524|gb|EDY73775.1| GA23405 [Drosophila pseudoobscura pseudoobscura]
          Length = 597

 Score = 41.2 bits (95), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +QGL+  +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G   VL+
Sbjct: 366 RQGLQPPVLVFVQSKDRAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFREGNIWVLI 425

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+  G+D     LV   D     F  +  S I  IGR  R
Sbjct: 426 CTELMGRGIDFKGVNLVINYD-----FPPTTISYIHRIGRTGR 463


>gi|170576579|ref|XP_001893687.1| RNA-dependent helicase [Brugia malayi]
 gi|158600176|gb|EDP37484.1| RNA-dependent helicase, putative [Brugia malayi]
          Length = 553

 Score = 41.2 bits (95), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 21/172 (12%)

Query: 566 TQVEDVYDEIN-----------LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           TQ+ ++ DE N           +  ++  + ++ V TKR A+DLT ++         +H 
Sbjct: 348 TQIVEIIDESNKQQRLMAILSDIMNKEDCKTIIFVETKRKADDLTRWMRRDGWPALCIHG 407

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +    ER   + + R GK  +L+  ++   GLD+ +   V   D     +  +    +  
Sbjct: 408 DKGQSERDWALSEFRSGKTPILLATDVAARGLDVDDIKYVINFD-----YSNNSEDYVHR 462

Query: 675 IGRAARNVNSKV----ILYADTI-TKSIQLAIDETTRRREKQLEHNKKHNIN 721
           IGR  R   + V      YA+    K +   ++E  +    +L    K N N
Sbjct: 463 IGRTGRRDKTGVAYTFFTYANAPKAKDLIKVLEEANQSIPPELHQMAKDNFN 514


>gi|154282055|ref|XP_001541840.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150412019|gb|EDN07407.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1437

 Score = 41.2 bits (95), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DLR GK ++L+  ++L EG+D+  C LV   D      + +  S IQ  GR AR   S
Sbjct: 443 IDDLRSGKKNLLIATSVLEEGIDVSACHLVVCFDT-----ISNLRSFIQRRGR-ARKERS 496

Query: 685 KVILY 689
           K +++
Sbjct: 497 KFVMF 501


>gi|28198133|ref|NP_778447.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
 gi|28056193|gb|AAO28096.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
          Length = 615

 Score = 41.2 bits (95), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 4/121 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R +    ++ +++  +R   I  L+ GK D+LV  ++   
Sbjct: 257 MIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAAR 316

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+     V  L+ D    + S    I   GRA R  + + IL+     K +   I+  
Sbjct: 317 GLDVERISHV--LNYDIPYDVESYVHRIGRTGRAGR--SGEAILFVTPREKGMLRQIERA 372

Query: 705 T 705
           T
Sbjct: 373 T 373


>gi|308173550|ref|YP_003920255.1| branch migrating ATP-dependent DNA helicase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606414|emb|CBI42785.1| branch migrating ATP-dependent DNA helicase involved in DNA
           recombination and repair [Bacillus amyloliquefaciens DSM
           7]
          Length = 682

 Score = 41.2 bits (95), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           +Y     V  MH ++ + E+ +++R+    +  VLV   ++  G+++P   ++ I DAD+
Sbjct: 497 VYRGKWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADR 556

Query: 662 EGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691
            G     + L Q  GR  R +  S  IL AD
Sbjct: 557 FGL----SQLHQLRGRVGRGDHQSFCILMAD 583


>gi|221119958|ref|XP_002163544.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 53
           [Hydra magnipapillata]
          Length = 745

 Score = 41.2 bits (95), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 20/158 (12%)

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
           GS +L+ C    V Q+          VE      + + V D I+  A  G ++++ V  K
Sbjct: 481 GSLDLQACHS--VSQL----------VEFIEQHEKQDRVMDFISAMAPDG-KLIIFVGRK 527

Query: 593 RMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
             A+D++  L  +  NI ++ +H +    +R + + D++ G   VL+  ++   GLDI +
Sbjct: 528 VTADDISSNLAMKGTNIGIQCIHGDRDQSDREQALEDMKTGAARVLIATDVASRGLDIKD 587

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             L  +L+ D   F R     +  IGR  R   S   L
Sbjct: 588 --LTHVLNYD---FPRHIEDYVHRIGRTGRAGRSGCAL 620


>gi|149003146|ref|ZP_01828055.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP14-BS69]
 gi|237651085|ref|ZP_04525337.1| transcription-repair coupling factor [Streptococcus pneumoniae CCRI
           1974]
 gi|237821198|ref|ZP_04597043.1| transcription-repair coupling factor [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147758887|gb|EDK65883.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP14-BS69]
          Length = 1169

 Score = 41.2 bits (95), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 130/309 (42%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  +++      A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V + V+    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIVASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302



 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|119963381|ref|YP_948725.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
 gi|119950240|gb|ABM09151.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
          Length = 726

 Score = 41.2 bits (95), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ++  V TK   EDL + L  R  +   ++ ++   +R   +  L+ G+ D+LV  ++   
Sbjct: 319 VIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAAR 378

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R+ ++  IL+     K +  +I+
Sbjct: 379 GLDVERISHVINYDIPHDTESYVHR----IGRTGRAGRSGDA--ILFMTPREKYLLRSIE 432

Query: 703 ETTRRREKQLEHNKKHNIN 721
           + TR+  +Q+       +N
Sbjct: 433 KATRQPVEQMHLPTAETVN 451


>gi|91210269|ref|YP_540255.1| transcription-repair coupling factor [Escherichia coli UTI89]
 gi|237706900|ref|ZP_04537381.1| transcription-repair coupling factor [Escherichia sp. 3_2_53FAA]
 gi|91071843|gb|ABE06724.1| transcription-repair coupling factor; mutation frequency decline
           [Escherichia coli UTI89]
 gi|226898110|gb|EEH84369.1| transcription-repair coupling factor [Escherichia sp. 3_2_53FAA]
          Length = 1169

 Score = 41.2 bits (95), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 37  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 96

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 97  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 145

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 146 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 196

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 197 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 251

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 252 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 294

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 295 SYFPANTLL 303


>gi|194336584|ref|YP_002018378.1| primosomal protein N' [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309061|gb|ACF43761.1| primosomal protein N' [Pelodictyon phaeoclathratiforme BU-1]
          Length = 812

 Score = 41.2 bits (95), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 10/146 (6%)

Query: 80  SQSSISMSEKQTREISEQTMTPSVQALARLIQSD----NPLLKNGKIWTPHRSWSINNHS 135
           ++ S+  S KQ   I       +  A A  I S     N L+K G  +      ++ +H 
Sbjct: 203 AEESLKNSPKQLEAIKILASFGNTFAFAETIGSSRETLNALVKKG--FVEKSQMAVTSHF 260

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFT---MAKVIEA 191
                   Q+   P+  Q  A+ QL   +   E K  LL GVTGSGKT     + K + A
Sbjct: 261 TTGFSETPQSTKTPTASQQKALEQLTHAVTQEEYKTFLLHGVTGSGKTLIYIELLKKVLA 320

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFF 217
             + AIV+ P   L  Q    F+  F
Sbjct: 321 AGKTAIVLVPEIALTPQTAGRFREHF 346


>gi|69248136|ref|ZP_00604639.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257878212|ref|ZP_05657865.1| helicase [Enterococcus faecium 1,230,933]
 gi|257881006|ref|ZP_05660659.1| helicase [Enterococcus faecium 1,231,502]
 gi|257884664|ref|ZP_05664317.1| helicase [Enterococcus faecium 1,231,501]
 gi|257889589|ref|ZP_05669242.1| helicase [Enterococcus faecium 1,231,410]
 gi|257892472|ref|ZP_05672125.1| helicase [Enterococcus faecium 1,231,408]
 gi|258616279|ref|ZP_05714049.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium DO]
 gi|260559258|ref|ZP_05831444.1| helicase [Enterococcus faecium C68]
 gi|293553475|ref|ZP_06674103.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1039]
 gi|293559336|ref|ZP_06675878.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1162]
 gi|293569834|ref|ZP_06680921.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1071]
 gi|294617902|ref|ZP_06697511.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1679]
 gi|294622258|ref|ZP_06701312.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium U0317]
 gi|314939754|ref|ZP_07846976.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|314942115|ref|ZP_07848971.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|314948290|ref|ZP_07851682.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
 gi|314952378|ref|ZP_07855385.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|314992003|ref|ZP_07857456.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|314995699|ref|ZP_07860789.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|68194541|gb|EAN09035.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257812440|gb|EEV41198.1| helicase [Enterococcus faecium 1,230,933]
 gi|257816664|gb|EEV43992.1| helicase [Enterococcus faecium 1,231,502]
 gi|257820502|gb|EEV47650.1| helicase [Enterococcus faecium 1,231,501]
 gi|257825949|gb|EEV52575.1| helicase [Enterococcus faecium 1,231,410]
 gi|257828851|gb|EEV55458.1| helicase [Enterococcus faecium 1,231,408]
 gi|260075015|gb|EEW63331.1| helicase [Enterococcus faecium C68]
 gi|291587582|gb|EFF19459.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1071]
 gi|291595847|gb|EFF27131.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1679]
 gi|291598229|gb|EFF29324.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium U0317]
 gi|291602352|gb|EFF32576.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1039]
 gi|291606700|gb|EFF36092.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1162]
 gi|313590090|gb|EFR68935.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|313593438|gb|EFR72283.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|313595495|gb|EFR74340.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|313599125|gb|EFR77970.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|313640983|gb|EFS05563.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|313645271|gb|EFS09851.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
          Length = 449

 Score = 41.2 bits (95), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 79/154 (51%), Gaps = 12/154 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++ +YL  + ++V  +H ++   ER  ++R ++  ++  +V  +L   G+DI  
Sbjct: 252 TKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEYQYVVATDLAARGIDIE- 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKSIQLAIDETTRRR 708
            G+  +++A+    L      I  +GR  RN    + + LY+    ++I  AI++     
Sbjct: 311 -GVSHVINAEIPEDL---DFFIHRVGRTGRNGLKGTAITLYSPNDEQAID-AIEKLGVSF 365

Query: 709 E----KQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           E    K  E  K ++ N ++ +EK  +V+DP L+
Sbjct: 366 EPKEIKNGEIVKTYDRNRRAKREKSKDVLDPTLI 399


>gi|304398629|ref|ZP_07380501.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304353840|gb|EFM18215.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 442

 Score = 41.2 bits (95), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L  +L+E  IR  Y+  E+   +R E I+ L  G+ +VLV  ++  
Sbjct: 250 RCIVFVRKRERLHELVSWLHEAGIRSSYLEGEMVQAKRNEAIKRLSEGRVNVLVATDIAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+ +   V   D       R+  + +  IGR  R
Sbjct: 310 RGIDVEDVSHVFNYD-----MPRTADTYLHRIGRTGR 341


>gi|260945675|ref|XP_002617135.1| hypothetical protein CLUG_02579 [Clavispora lusitaniae ATCC 42720]
 gi|238848989|gb|EEQ38453.1| hypothetical protein CLUG_02579 [Clavispora lusitaniae ATCC 42720]
          Length = 572

 Score = 41.2 bits (95), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L     E  +  +Y+  E    ER  I+ D + GK DVL  + +  EG DIP    + + 
Sbjct: 202 LCGVFQENGVNAQYVTGETVKYERQAILEDFKNGKIDVLCNVLVFTEGTDIPNIDSLILA 261

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
              K     S+  L+Q IGR  R
Sbjct: 262 RPTK-----SRPLLVQMIGRGLR 279


>gi|195380381|ref|XP_002048949.1| GJ21324 [Drosophila virilis]
 gi|194143746|gb|EDW60142.1| GJ21324 [Drosophila virilis]
          Length = 1366

 Score = 41.2 bits (95), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+++I+ D R G  +VLV  ++  EGLD+ E  L+   D        + T  +Q IGR  
Sbjct: 481 EQLQIMSDFRQGITNVLVATSIGEEGLDVGEVELIVCFDICSS----NPTRFVQRIGRTG 536

Query: 680 RNVNSKVIL 688
           R     V++
Sbjct: 537 RQKRGDVVM 545


>gi|160914516|ref|ZP_02076731.1| hypothetical protein EUBDOL_00522 [Eubacterium dolichum DSM 3991]
 gi|158433674|gb|EDP11963.1| hypothetical protein EUBDOL_00522 [Eubacterium dolichum DSM 3991]
          Length = 420

 Score = 41.2 bits (95), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 18/187 (9%)

Query: 522 RPTTIVVSATPGSW---ELEQCQGIIVEQIIRPTG--LVDPPVEIRSARTQVEDVYDEIN 576
           R   + ++ATP      ++E  +  +VE   RP G  L++P  EIR+   +++  Y    
Sbjct: 227 RGVMVYLTATPDESMLKDVEDGKLALVELFERPHGYPLIEP--EIRTCANRMQLFYLIAF 284

Query: 577 LAAQQ--GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           L  Q+  G++ L+ V T RMA +L + L     R +   S+ +  E+  I+ D    K++
Sbjct: 285 LYQQRKAGIQTLVFVPTIRMANELHKKLCLL-FRCKAFTSQSEDKEK--IVDDFHKKKYE 341

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV---NSKVILYAD 691
            L+   +L  G+ I     + IL AD   F  ++ SL Q IGR  R++   + K I   +
Sbjct: 342 CLITTTILERGITIKG-IYIIILQADHVVF--NEASLTQIIGRVGRSIEMPSGKGIFLCE 398

Query: 692 TITKSIQ 698
            +T+ I+
Sbjct: 399 RVTRDIE 405


>gi|55981235|ref|YP_144532.1| ATP-dependent DNA helicase RecG [Thermus thermophilus HB8]
 gi|55772648|dbj|BAD71089.1| DNA helicase RecG [Thermus thermophilus HB8]
          Length = 770

 Score = 41.2 bits (95), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  +   E+ E++   R G +D+LV   ++  G+DIP+  L+ + +A++ G  
Sbjct: 588 GVRLALLHGRMPAREKDEVMEAFRRGDYDLLVSTTVVEVGVDIPKATLIIVENAERFGL- 646

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R 
Sbjct: 647 ---AQLHQLRGRVGRG 659


>gi|320589959|gb|EFX02415.1| eukaryotic initiation factor 4a-12 [Grosmannia clavigera kw1407]
          Length = 403

 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R
Sbjct: 261 DLYDTLTIT-----QAVIFCNTRRKVDWLTDKMRESNFTVSSMHGDMPQKERDSIMQDFR 315

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
                VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 316 QFNTRVLISTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 361


>gi|297830946|ref|XP_002883355.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329195|gb|EFH59614.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 612

 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 8/121 (6%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G + ++   TKR A+ L+ Y   R+ +   +H ++   +R   +   R G F++LV  +
Sbjct: 345 KGGKCIVFTQTKRDADRLS-YALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATD 403

Query: 641 LLREGLDIPECGLVAI--LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           +   GLD+P   L+    L  + E F+          GRA +   S +++Y+   +++++
Sbjct: 404 VAARGLDVPNVDLIIHYELPNNTETFVHRTGR----TGRAGKK-GSAILIYSQDQSRAVK 458

Query: 699 L 699
           +
Sbjct: 459 I 459


>gi|261346027|ref|ZP_05973671.1| transcription-repair coupling factor [Providencia rustigianii DSM
           4541]
 gi|282565913|gb|EFB71448.1| transcription-repair coupling factor [Providencia rustigianii DSM
           4541]
          Length = 1148

 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 55/299 (18%), Positives = 120/299 (40%), Gaps = 41/299 (13%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF--FPHNAVEYFVSY-YDYY 232
           + G+      A++IE  Q P +++  +   A ++  E   F  +P  A+  + +  YD +
Sbjct: 22  LVGAAGPLECAEMIERHQGPVVIVTRDMQNALRVRDELHQFTQYPIEALSDWETLPYDNF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
            P   +      I    S   ++  M+  A          +++   + +  +   +  + 
Sbjct: 82  SPHQEI------ISHRLSTLYRLPTMQKGA----------LILPVNTLMQKVCPPDFLTG 125

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             + +  GD + +  L   L K  Y+  +  +  G + + G  +++FP    D+ +R+  
Sbjct: 126 HALVMAKGDKLSRDNLREELDKAGYRHVEQVLEHGEYAIRGALLDLFPMG-SDLPFRIDF 184

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           F ++I+ +  F   T + +  V  I +     +    PT   A++  + + + R      
Sbjct: 185 FDDEIDSLRTFDVDTQRTLEEVPDINLLPAHEF----PTDKDAIERFRSQWRERF----- 235

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                E +R       D E +    S Q++ +   Y       EP P+LF+Y+P ++L 
Sbjct: 236 -----EVRR-------DPEHIYQQVSKQTLPSGIEYWQPLFFAEPLPSLFDYLPANTLF 282


>gi|221059063|ref|XP_002260177.1| RNA helicase [Plasmodium knowlesi strain H]
 gi|193810250|emb|CAQ41444.1| RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 398

 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  + LT+ ++ R   V  MH ++   +R  I+R+ R G   VLV  +LL  G+D+ +
Sbjct: 271 TRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARGIDVQQ 330

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        S  + I  IGR+ R
Sbjct: 331 VSLVINYDLPT-----SPDTYIHRIGRSGR 355


>gi|119605385|gb|EAW84979.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_c [Homo
           sapiens]
          Length = 274

 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 87  VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 146

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 147 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 195

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 196 VLMDLKALLLEAKQKVPP 213


>gi|60501851|gb|AAX22125.1| vasa-2 [Carassius auratus]
          Length = 677

 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R G+  VLV  ++  
Sbjct: 494 RTMVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALSDFRTGQCPVLVATSVAA 553

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDI +   V   D        S    +  IGR  R  N
Sbjct: 554 RGLDIEQVQHVVNFD-----LPSSIDEYVHRIGRTGRCGN 588


>gi|74003472|ref|XP_860656.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 11 [Canis familiaris]
          Length = 267

 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 187 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 246

Query: 651 CGLV 654
             LV
Sbjct: 247 VSLV 250


>gi|84687759|ref|ZP_01015631.1| Possible DNA helicase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664260|gb|EAQ10752.1| Possible DNA helicase [Rhodobacterales bacterium HTCC2654]
          Length = 1569

 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 566 TQVEDVYD--EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           T++ D+ D  E  L  +     ++   T+   E + E+L ++ I     H+ +   ++ E
Sbjct: 374 TKLTDILDAIEAGLPREGASGAVVYCATRSATERVAEFLKQQGIAAERYHAGLSADDKRE 433

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           I  D R+G   V+   N    G+D P+  LV  +  D  G L    + +Q  GRA R+ +
Sbjct: 434 IQEDFRVGNLRVIAATNAFGMGVDKPDIRLV--VHGDVPGSLE---NYMQEAGRAGRDRD 488

Query: 684 -SKVILYADTITKSIQLAIDETTR 706
            ++ +L  +T     Q ++   +R
Sbjct: 489 PAQCVLLFNTEDVDRQFSLSARSR 512


>gi|67920172|ref|ZP_00513692.1| Helicase, C-terminal [Crocosphaera watsonii WH 8501]
 gi|67857656|gb|EAM52895.1| Helicase, C-terminal [Crocosphaera watsonii WH 8501]
          Length = 266

 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            I  R++     + ER EI+   R GK  VL    L  EGLDIP    V +    K    
Sbjct: 91  GIPARHLDGTTPSQERQEILEQFRQGKILVLTNCQLFDEGLDIPALEAVQVAKPTK---- 146

Query: 666 RSKTSLIQTIGRAARNVNSK 685
            S T  +Q +GR  R    K
Sbjct: 147 -SLTKWLQMVGRVLRPTEDK 165


>gi|308159705|gb|EFO62227.1| Helicase [Giardia lamblia P15]
          Length = 476

 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 128 SWSINNHSKDITFFQMQTDYH-PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFT-- 184
           SW   +  + IT     + +H P+  Q AAI  +L     R++  LL   TG+GKT +  
Sbjct: 25  SWEKLSVPESITELLHASGFHTPTKTQVAAIKPIL---CDRKRSGLLEAPTGTGKTISFL 81

Query: 185 ---MAKVIEAMQRP-AIVMAPNKILAAQLYSEFKNF 216
              M+ +I     P AI++AP KIL  Q+Y   +N 
Sbjct: 82  TVAMSHIIPDKSLPQAIIIAPTKILCRQIYGVAENL 117


>gi|302519357|ref|ZP_07271699.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
 gi|302428252|gb|EFL00068.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
          Length = 492

 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +AA+ G R+LL + TK   + LTE+L    +R   +H      +R   +   + G   VL
Sbjct: 302 IAARDG-RVLLFLDTKHAVDRLTEHLLRSGVRAAALHGGKSQPQRTRTLEQFKTGHVSVL 360

Query: 637 VGINLLREGLDIPECGLVAILD 658
           V  N+   G+ + +  LV  +D
Sbjct: 361 VATNVAARGIHVDDLDLVVNVD 382


>gi|291407215|ref|XP_002720005.1| PREDICTED: CG7878-like [Oryctolagus cuniculus]
          Length = 635

 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++ V  K  A+DL   L  + I +  +H + +  +R + + D R GK  +L+  +L  
Sbjct: 477 KVIVFVSRKITADDLASDLGIQGIPIESLHGDREQSDREQALEDFRTGKVKILIATDLAS 536

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     F R+    +  IGR  R
Sbjct: 537 RGLDVNDITHVYNYD-----FPRNIEEYVHRIGRTGR 568


>gi|261207791|ref|ZP_05922476.1| helicase [Enterococcus faecium TC 6]
 gi|289566243|ref|ZP_06446675.1| ATP-dependent RNA helicase YqfR [Enterococcus faecium D344SRF]
 gi|294616582|ref|ZP_06696358.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1636]
 gi|260078174|gb|EEW65880.1| helicase [Enterococcus faecium TC 6]
 gi|289161950|gb|EFD09818.1| ATP-dependent RNA helicase YqfR [Enterococcus faecium D344SRF]
 gi|291590532|gb|EFF22265.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1636]
          Length = 449

 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 79/154 (51%), Gaps = 12/154 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++ +YL  + ++V  +H ++   ER  ++R ++  ++  +V  +L   G+DI  
Sbjct: 252 TKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEYQYVVATDLAARGIDIE- 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKSIQLAIDETTRRR 708
            G+  +++A+    L      I  +GR  RN    + + LY+    ++I  AI++     
Sbjct: 311 -GVSHVINAEIPEDL---DFFIHRVGRTGRNGLKGTAITLYSPNDEQAID-AIEKLGVSF 365

Query: 709 E----KQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           E    K  E  K ++ N ++ +EK  +V+DP L+
Sbjct: 366 EPKEIKNGEIVKTYDRNRRAKREKSKDVLDPTLI 399


>gi|284033244|ref|YP_003383175.1| DEAD/DEAH box helicase domain-containing protein [Kribbella flavida
           DSM 17836]
 gi|283812537|gb|ADB34376.1| DEAD/DEAH box helicase domain protein [Kribbella flavida DSM 17836]
          Length = 815

 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 14/136 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A+   R+++   TKR A  LT+ L +R  +   +H ++    R   +   R  K DVL
Sbjct: 239 LQAEDRGRVMIFCRTKREAGRLTDDLADRGFKAAAIHGDLNQQARERALTRFRGDKIDVL 298

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL----YAD- 691
           +  ++   G+D+   G+  +++         + + I  IGR  R   S + +    +AD 
Sbjct: 299 ICTDVAARGIDV--EGVTHVIN---NTCPEDEKAYIHRIGRTGRAGASGIAVTFVDWADV 353

Query: 692 ----TITKSIQLAIDE 703
               TI K++ L  DE
Sbjct: 354 TRWKTINKALDLPYDE 369


>gi|213408108|ref|XP_002174825.1| dicer [Schizosaccharomyces japonicus yFS275]
 gi|212002872|gb|EEB08532.1| dicer [Schizosaccharomyces japonicus yFS275]
          Length = 1384

 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+IR  + G  +VLV   +  EGLDIP C +V      +    ++   LIQ+ GRA  N 
Sbjct: 416 EVIRRFKHGSANVLVATAIAEEGLDIPSCDVVF-----RFSLCKTAIQLIQSKGRARANT 470

Query: 683 NSKVILYAD 691
           +  V L ++
Sbjct: 471 SIFVNLLSE 479


>gi|254456582|ref|ZP_05070011.1| ATP-dependent DNA helicase RecG [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083584|gb|EDZ61010.1| ATP-dependent DNA helicase RecG [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 683

 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H +  T E+ +I+ +    KFD+LV   ++  G+D P   ++ I +A+K G    
Sbjct: 507 KVSLLHGKTDTEEKEKILNNFLNKKFDILVSTTIIEVGIDFPNANVIIIENANKFGL--- 563

Query: 668 KTSLIQTIGRAAR 680
            + L Q  GR  R
Sbjct: 564 -SQLHQLRGRVGR 575


>gi|110805128|ref|YP_688648.1| transcription-repair coupling factor [Shigella flexneri 5 str.
           8401]
 gi|110614676|gb|ABF03343.1| transcription-repair coupling factor [Shigella flexneri 5 str.
           8401]
          Length = 1169

 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 37  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 96

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS----ATRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 97  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGILIVPVNTLMQR-----VCPHSFLH 145

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 146 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 196

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 197 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 251

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 252 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 294

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 295 SYFPANTLL 303



 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 844 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 901

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 902 NTIIIERADHFGL----AQLHQLRGRVGRS 927


>gi|74003480|ref|XP_860790.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 15 [Canis familiaris]
          Length = 334

 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 209 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 268

Query: 651 CGLV 654
             LV
Sbjct: 269 VSLV 272


>gi|33592030|ref|NP_879674.1| transcription-repair coupling factor [Bordetella pertussis Tohama
           I]
 gi|33571674|emb|CAE41167.1| transcription-repair coupling factor [Bordetella pertussis Tohama
           I]
 gi|332381446|gb|AEE66293.1| transcription-repair coupling factor [Bordetella pertussis CS]
          Length = 1143

 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 36/186 (19%), Positives = 74/186 (39%), Gaps = 13/186 (6%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           GSG  + +A +     +P +V+  + + A +L  E   F P   V      ++    +A+
Sbjct: 26  GSGDGWLLADLARQAGKPLVVLTADPLEAQRLADEIPQFAPELRVRQLPD-WETLPYDAF 84

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
            P  D   ++  +++  ++           +  D + V   + +Y +      +      
Sbjct: 85  SPHQDLISQRLRTLHALMN-----------QGVDILTVPVTTALYRLAPPAFLAAYTFSF 133

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           K  D +++  L + L    Y         G F + G  I++FP     V +R+ +F ++I
Sbjct: 134 KQKDRLDEAALRAQLTLANYSHVTQVTAPGEFCLRGGLIDLFPMG-SVVPYRLDLFDDEI 192

Query: 358 EEISEF 363
           E I  F
Sbjct: 193 ESIRSF 198


>gi|322388624|ref|ZP_08062224.1| helicase [Streptococcus infantis ATCC 700779]
 gi|321140544|gb|EFX36049.1| helicase [Streptococcus infantis ATCC 700779]
          Length = 966

 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 9/136 (6%)

Query: 554 LVDPPVEIR--SARTQVEDVYDEINLAAQQGLRI--LLTVLTKRMAEDLTEYLYERNIRV 609
           L+D    I   ++  +V+ +  +I+     G ++  L+   +K+ A +L+  L +     
Sbjct: 431 LIDEKTNISNLTSNERVKHILQKIDFYGVSGEKVKGLIFCSSKQEAHELSLKLNQHGKTC 490

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           R +  +     R E++  L  G+ D ++ +++  EG+DIP    V +L        +S  
Sbjct: 491 RALTGDDNIETRNEVVSQLEKGELDYILTVDIFNEGIDIPSVNQVVMLRN-----TQSSI 545

Query: 670 SLIQTIGRAARNVNSK 685
             +Q +GR  R  +SK
Sbjct: 546 VFVQQLGRGLRKHDSK 561


>gi|302318908|ref|NP_001180543.1| dicer-2 [Bombyx mori]
 gi|300669733|dbj|BAJ11655.1| DICER-2 [Bombyx mori]
          Length = 1677

 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           G  + L+  +++ EGLDIP+C LV   DA  E       S IQ+ GRA  +  S VIL
Sbjct: 468 GDLNCLISTSVIEEGLDIPQCALVVRYDAPTE-----YRSYIQSKGRARSSEASFVIL 520


>gi|296424770|ref|XP_002841919.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638171|emb|CAZ86110.1| unnamed protein product [Tuber melanosporum]
          Length = 1402

 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++  +   R GK + L+  ++  EGLDIP+C LV   D       R+    +Q+ GRA 
Sbjct: 391 EQMITVSKFRQGKLNCLIATSVAEEGLDIPDCSLVIRFD-----LYRTMIQYVQSRGRAR 445

Query: 680 RNVNSKV 686
            +V+  +
Sbjct: 446 SSVSKYI 452


>gi|254442945|ref|ZP_05056421.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257253|gb|EDY81561.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 436

 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 23/188 (12%)

Query: 554 LVDP-PVEIRSARTQVEDVYD---EINLAAQQGL-----------RILLTVLTKRMAEDL 598
           L DP  +E+ +A   VE +     E++  ++ GL           R+L+ V +KR AE++
Sbjct: 201 LKDPVKIELEAASRPVESIAQRAIEVDGNSRTGLLRHLLETEGWERVLVFVGSKRRAENV 260

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           T  L +  I+   +H  +   +R   +   +  K  VL+  ++   G+DI   GL  +++
Sbjct: 261 TVKLQKHGIKAVALHGNMSQDKRARSLERFKQSKVRVLMATDVAARGIDI--AGLPCVVN 318

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT---RRREKQLEHN 715
            D     RS    +  IGR  R   S + +   T  K     + E     R   ++LE  
Sbjct: 319 YD---LPRSAADYVHRIGRTGRAGESGLAVNFITDDKDAHFRLIEKKNGLRLERERLEGF 375

Query: 716 KKHNINPQ 723
              N NP+
Sbjct: 376 VPENWNPE 383


>gi|149511215|ref|XP_001519332.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
           [Ornithorhynchus anatinus]
          Length = 790

 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +  QG R ++   TK+   D TE     NI+   + +H ++   +R   ++  R G F V
Sbjct: 431 SGNQG-RAIVFCETKK---DATEMALNSNIKQEAQALHGDIAQSQREITLKGFRNGVFKV 486

Query: 636 LVGINLLREGLDIPECGLV 654
           LV  N+   GLDIPE  LV
Sbjct: 487 LVATNVAARGLDIPEVDLV 505


>gi|42528079|ref|NP_973177.1| ATP-dependent DNA helicase RecG [Treponema denticola ATCC 35405]
 gi|41819124|gb|AAS13096.1| ATP-dependent DNA helicase RecG [Treponema denticola ATCC 35405]
          Length = 678

 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 14/135 (10%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT----EYLYER------N 606
           P +   +   + E VY+ I     QG +           EDL+    E ++E       N
Sbjct: 461 PIITYVAGEDKAERVYNFIGQEILQGRQAYFVYPLIEENEDLSLKSAERMFEELKTGFPN 520

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
             +  +HS+V   E+  I+ + R GK ++LV  +++  G+D+P    + I  AD+ G   
Sbjct: 521 HSLALIHSKVAEEEQKRIMEEFRSGKLNILVATSVVEVGVDVPNATCMVIEHADRFGL-- 578

Query: 667 SKTSLIQTIGRAARN 681
             ++L Q  GR  R 
Sbjct: 579 --SALHQLRGRVGRG 591


>gi|12381896|dbj|BAB21258.1| eukaryotic initiation factor 4A [Oryza sativa]
 gi|12381898|dbj|BAB21259.1| eukaryotic initiation factor 4A [Oryza sativa]
          Length = 414

 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 12/112 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD  +LA  Q +   + V T RM + LT+ +  R+  V   H ++  + R  I+R+ R
Sbjct: 273 DLYD--SLAITQSV---IFVNTLRMVDWLTDKMRSRDHTVSATHGDMDQITRDIIMREFR 327

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT-SLIQTIGRAAR 680
            G   VL+  +LL  G+D+ +  LV   D      L ++T + +  IGR+ R
Sbjct: 328 SGSSRVLITTDLLDRGIDVQQVSLVINYD------LSTQTENYLHRIGRSGR 373


>gi|332797792|ref|YP_004459292.1| DEAD/DEAH box helicase domain-containing protein [Acidianus
           hospitalis W1]
 gi|332695527|gb|AEE94994.1| DEAD/DEAH box helicase domain protein [Acidianus hospitalis W1]
          Length = 622

 Score = 41.2 bits (95), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 9/110 (8%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +QG   L+ V +++ AE L E L +      + HS V   ER +I+  L+ G+ +V+V  
Sbjct: 179 KQGKNALVFVRSRKSAESLAETLRKFGFNASHYHSGVPLEERRQIVEMLKKGEINVVVST 238

Query: 640 NLLREGLDIPECGLV----AILDADKEGFLRSKTSL-----IQTIGRAAR 680
             L +G+++P    +     + ++D++G L+    L      Q  GRA R
Sbjct: 239 TALGQGVNLPVYATIFYDTVLPESDEKGNLKGWRDLNLMEFKQMAGRAGR 288


>gi|332374956|gb|AEE62619.1| unknown [Dendroctonus ponderosae]
          Length = 588

 Score = 41.2 bits (95), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A+ L   L    I V  +H++    +R  +++  R GK  VL+   L+  
Sbjct: 368 VLIFVQSKERAQQLFNELIYDGIMVDAIHADRTQTQRDNVVKCFREGKIWVLICTELMAR 427

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D     LV   D     F  S  S +  IGRA R
Sbjct: 428 GIDFKGVNLVVNYD-----FPPSTISYVHRIGRAGR 458


>gi|302560465|ref|ZP_07312807.1| DEAD/DEAH family helicase [Streptomyces griseoflavus Tu4000]
 gi|302478083|gb|EFL41176.1| DEAD/DEAH family helicase [Streptomyces griseoflavus Tu4000]
          Length = 1014

 Score = 41.2 bits (95), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 79/188 (42%), Gaps = 22/188 (11%)

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIV--VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           RL   +DN+ L    +  +  TT +  V    G++++     ++    +R  GLV     
Sbjct: 455 RLWEALDNKLLCPFHYFGISDTTDLSAVEWKRGAYDVSSLSNVLTGNKVR-AGLV----- 508

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +++ R +V D            +R L   ++   A+ + E           +  E    +
Sbjct: 509 VKAVREKVAD---------PSRMRALGFCVSVAHAQFMAECFRSAGFLAVAVSGETPADQ 559

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R + + DLR G   V+  ++L  EG+D+P+   + +L         S T  +Q +GR  R
Sbjct: 560 RRQALSDLRSGALQVIFSVDLFNEGVDVPDVDTLLLLRPTS-----SATVFLQQLGRGLR 614

Query: 681 NVNSKVIL 688
             ++K +L
Sbjct: 615 RSDNKPVL 622


>gi|261392435|emb|CAX49980.1| transcription-repair coupling factor (TRCF) [Neisseria meningitidis
           8013]
          Length = 1379

 Score = 41.2 bits (95), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 90/212 (42%), Gaps = 17/212 (8%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +V+  +   A +L + ++ F P++    F+  ++    E + P  D   E+ S++ 
Sbjct: 33  RRLKVVLTQDAEQALRLQTAWRFFRPYDTA-VFLPDWETLPYERFSPHQDLVSERLSALW 91

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +    ++  A        D + V   + +  +  V   +     LK G +++   L + L
Sbjct: 92  Q----IKSGAA-------DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDL 140

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I 
Sbjct: 141 VDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTIS 199

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            V  I++     +    PT + A K  +   +
Sbjct: 200 PVSEIRLLPAHEF----PTDSEAQKIFRSRFR 227



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 1070 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1126

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 1127 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1162


>gi|257887499|ref|ZP_05667152.1| helicase [Enterococcus faecium 1,141,733]
 gi|293570504|ref|ZP_06681559.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E980]
 gi|257823553|gb|EEV50485.1| helicase [Enterococcus faecium 1,141,733]
 gi|291609450|gb|EFF38717.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E980]
          Length = 449

 Score = 41.2 bits (95), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 79/154 (51%), Gaps = 12/154 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++ +YL  + ++V  +H ++   ER  ++R ++  ++  +V  +L   G+DI  
Sbjct: 252 TKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEYQYVVATDLAARGIDIE- 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKSIQLAIDETTRRR 708
            G+  +++A+    L      I  +GR  RN    + + LY+    ++I  AI++     
Sbjct: 311 -GVSHVINAEIPEDL---DFFIHRVGRTGRNGLKGTAITLYSPNDEQAID-AIEKLGVSF 365

Query: 709 E----KQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           E    K  E  K ++ N ++ +EK  +V+DP L+
Sbjct: 366 EPKEIKNGEIVKTYDRNRRTKREKSKDVLDPTLI 399


>gi|242012227|ref|XP_002426835.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212511048|gb|EEB14097.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 678

 Score = 41.2 bits (95), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + +++  + ++ V TKR  +++T+ L +       +H +    ER  ++   R G+  +L
Sbjct: 369 IGSEKENKTIIFVETKRKVDNITQILRKDGWPALSIHGDKNQQERDHVLTQFRNGRASIL 428

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLD+ +   V I D     +  S    I  IGR  R
Sbjct: 429 VATDVAARGLDVEDVKFVIIFD-----YPSSLEDYIHRIGRTGR 467


>gi|168702194|ref|ZP_02734471.1| transcription-repair coupling factor [Gemmata obscuriglobus UQM
           2246]
          Length = 1121

 Score = 41.2 bits (95), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L  GD VE  EL   LV   YKR D     G F   G   +IFP    D  +R+  FG++
Sbjct: 159 LAAGDIVEPSELAEWLVANGYKRVDAVEFPGEFSRRGGICDIFPPDSPD-PFRLEFFGDE 217

Query: 357 IEEISEF 363
           +E +  F
Sbjct: 218 VEGLRTF 224


>gi|149183210|ref|ZP_01861656.1| ATP-dependent DNA helicase [Bacillus sp. SG-1]
 gi|148849075|gb|EDL63279.1| ATP-dependent DNA helicase [Bacillus sp. SG-1]
          Length = 682

 Score = 41.2 bits (95), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 5/96 (5%)

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           E+ ++   +V  MH  + + E+ E+++     +  VLV   ++  G+++P   ++ I DA
Sbjct: 495 EFYFQDRYKVGLMHGRLHSDEKDEVMKAFSRNEIQVLVSTTVVEVGVNVPNATMMVIYDA 554

Query: 660 DKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTIT 694
           ++ G     + L Q  GR  R    S  IL AD  T
Sbjct: 555 ERFGL----SQLHQLRGRVGRGSEQSYCILLADPKT 586


>gi|16740867|gb|AAH16295.1| EIF4A2 protein [Homo sapiens]
          Length = 179

 Score = 41.2 bits (95), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 54  TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 113

Query: 651 CGLV 654
             LV
Sbjct: 114 VSLV 117


>gi|299117107|emb|CBN73878.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 467

 Score = 41.2 bits (95), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+ V TK+  + LT  L         +H +    ER  ++ D + G+  +LV  ++  
Sbjct: 308 RVLIFVETKKGCDALTRSLRHEGWPALAIHGDKNQSERDRVLHDFKEGRSLILVATDVAA 367

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +  +V   D  KE       S +  IGR  R
Sbjct: 368 RGLDVKDIRMVINFDFPKE-----MESYVHRIGRCGR 399


>gi|297675282|ref|XP_002815615.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Pongo abelii]
          Length = 705

 Score = 41.2 bits (95), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 523 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRYGKCPVLVATSVAA 582

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 583 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 626


>gi|297830638|ref|XP_002883201.1| hypothetical protein ARALYDRAFT_479492 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329041|gb|EFH59460.1| hypothetical protein ARALYDRAFT_479492 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 408

 Score = 41.2 bits (95), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + L+E +   N  V  MH ++   ER EI+   R
Sbjct: 267 DLYDTLTIT-----QAVIFCNTKRKVDYLSEKMRSNNFTVSSMHGDMPQKERDEIMNQFR 321

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 322 SGESRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 367


>gi|238920914|ref|YP_002934429.1| ATP-dependent RNA helicase SrmB [Edwardsiella ictaluri 93-146]
 gi|238870483|gb|ACR70194.1| ATP-dependent RNA helicase SrmB [Edwardsiella ictaluri 93-146]
          Length = 448

 Score = 41.2 bits (95), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L  +L++  I+  ++  E+   +R E I+ +  G+ +VLV  ++   GLDIP+   V  
Sbjct: 263 ELVTWLHQAGIQACFLEGEMVQAKRNEAIKRMLDGRVNVLVATDVAARGLDIPDISHVFN 322

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
            D       RS    +  IGR AR       +    I    QL + + +R  ++ L+   
Sbjct: 323 FD-----MPRSADVYLHRIGRTARAGRKGTAI--SLIEAHDQLLLGKVSRYVQEPLKSRV 375

Query: 717 KHNINPQS 724
             N+ P++
Sbjct: 376 VDNLRPET 383


>gi|221107548|ref|XP_002154883.1| PREDICTED: similar to putative RNA-dependent RNA polymerase,
           partial [Hydra magnipapillata]
          Length = 2237

 Score = 41.2 bits (95), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 13/105 (12%)

Query: 584 RILLTVLTKRMAEDLTEYLYER----NIRVRYMHSEVKTL----ERIEIIRDLRLGKFDV 635
           ++L+ V T+ +A  L ++L +     N R+ + H     +    E+   IRD   G+ ++
Sbjct: 514 KVLIFVHTRNVARALYKFLCDNFGMFNPRMVFGHGGYDGMLWEGEQELAIRDFATGECNL 573

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +V  ++L EGLD+ EC +V    +     ++S    IQ  GRA +
Sbjct: 574 IVATSVLEEGLDVAECDVVVSFTS-----VKSLIQFIQVRGRARK 613


>gi|71904171|ref|YP_280974.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS6180]
 gi|71803266|gb|AAX72619.1| ATP-dependent DNA helicase [Streptococcus pyogenes MGAS6180]
          Length = 671

 Score = 41.2 bits (95), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L+ Y +E   +V  +H  +K  E+  I++D +  K  +LV   ++  G+++P   ++ I
Sbjct: 487 ELSTY-FEGIAKVALVHGRMKNDEKDAIMQDFKDKKSHILVSTTVIEVGVNVPNATIMII 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           +DAD+ G     + L Q  GR  R    S  +L A+  T S
Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGYKQSYAVLVANPKTDS 582


>gi|15675625|ref|NP_269799.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes M1 GAS]
 gi|71911332|ref|YP_282882.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS5005]
 gi|13622833|gb|AAK34520.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes M1 GAS]
 gi|71854114|gb|AAZ52137.1| ATP-dependent DNA helicase [Streptococcus pyogenes MGAS5005]
          Length = 671

 Score = 41.2 bits (95), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L+ Y +E   +V  +H  +K  E+  I++D +  K  +LV   ++  G+++P   ++ I
Sbjct: 487 ELSTY-FEGIAKVALVHGRMKNDEKDAIMQDFKDKKSHILVSTTVIEVGVNVPNATIMII 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           +DAD+ G     + L Q  GR  R    S  +L A+  T S
Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGYKQSYAVLVANPKTDS 582


>gi|71022799|ref|XP_761629.1| hypothetical protein UM05482.1 [Ustilago maydis 521]
 gi|74699660|sp|Q4P331|IF4A_USTMA RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|46101182|gb|EAK86415.1| hypothetical protein UM05482.1 [Ustilago maydis 521]
          Length = 411

 Score = 41.2 bits (95), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ L  R   V  MH +++  +R  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 286 TRRKVDWLTDKLTSREFTVSAMHGDMEQAQREVIMREFRSGSSRVLITTDLLARGIDVQQ 345

Query: 651 CGLV 654
             LV
Sbjct: 346 VSLV 349


>gi|321475108|gb|EFX86072.1| hypothetical protein DAPPUDRAFT_309030 [Daphnia pulex]
          Length = 1607

 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 5/65 (7%)

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +++  +++ EI++  R G  ++LV  ++L EG+DIP+C L+   D      +++    +Q
Sbjct: 416 TQILNMKQNEIMQYFREGLCNLLVATSVLEEGIDIPDCNLIIRFDR-----IKTYCDYVQ 470

Query: 674 TIGRA 678
           T GRA
Sbjct: 471 TKGRA 475


>gi|319787505|ref|YP_004146980.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466017|gb|ADV27749.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 616

 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 8/119 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   E+L   L  R +    ++ +++  +R   I+ L+ G+ DVLV  ++   GLD+  
Sbjct: 260 TKAATEELANKLQARGVAAAAINGDMQQQQRERTIQQLKDGRLDVLVATDVAARGLDVER 319

Query: 651 CGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
              V   D   D E ++      I   GRA R  + + IL+     K +  AI+  TR+
Sbjct: 320 ISHVLNYDIPYDTESYVHR----IGRTGRAGR--SGEAILFVTPREKGMLRAIERATRQ 372


>gi|295399761|ref|ZP_06809742.1| primosomal protein N' [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978164|gb|EFG53761.1| primosomal protein N' [Geobacillus thermoglucosidasius C56-YS93]
          Length = 804

 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 15/102 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+++ E+LT+ L E     R +  +V T  R      ++ +   GK D+L+G  ++ +GL
Sbjct: 564 TQKVEEELTKLLPE----ARVIRMDVDTTSRKGAHERLLAEFGEGKADILLGTQMIAKGL 619

Query: 647 DIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           D P+  LV +L AD    L       ++   L Q  GRA R+
Sbjct: 620 DFPKVTLVGVLAADTTLHLPDFRASEKTFQLLTQVSGRAGRH 661



 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 150 SGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFTMAKVIEAMQR---PAIVMAPNKIL 205
           + +Q  A++ +++ + + + +V LL GVTGSGKT    + IE + R    AIV+ P   L
Sbjct: 268 TAEQEKALSSVIESVRTNKHEVFLLYGVTGSGKTEVYMQAIEEVLRQGKEAIVLVPEISL 327

Query: 206 AAQLYSEFKNFF 217
             Q+   FK  F
Sbjct: 328 TPQMVKRFKGRF 339


>gi|258423399|ref|ZP_05686290.1| helicase domain-containing protein [Staphylococcus aureus A9635]
 gi|257846460|gb|EEV70483.1| helicase domain-containing protein [Staphylococcus aureus A9635]
          Length = 360

 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 11/106 (10%)

Query: 602 LYERNI-RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           +Y++ I ++ Y+HSE   + R E +  LR G FDV+    +L  G  +    +V I DA 
Sbjct: 246 VYKQKITKLTYVHSE--DVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVI-DAH 302

Query: 661 KEGFLRSKTSLIQTIGRAARNV---NSKVILYADTITKSIQLAIDE 703
           +     ++ +LIQ  GR  R +     KV+ + + ++ ++ LA  E
Sbjct: 303 Q----YTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMNMILAKKE 344


>gi|260799746|ref|XP_002594845.1| hypothetical protein BRAFLDRAFT_124435 [Branchiostoma floridae]
 gi|229280082|gb|EEN50856.1| hypothetical protein BRAFLDRAFT_124435 [Branchiostoma floridae]
          Length = 724

 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L   L    I V  +H++    +R   ++  R GK  VL+   L+  
Sbjct: 460 VLIFVQSKERAKELFHELIYDGINVDVIHADRTQTQRDNTVKCFRTGKIWVLICTELMGR 519

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D     LV   D     F  S  S I  IGR  R
Sbjct: 520 GIDFKGVNLVINYD-----FPTSAVSYIHRIGRTGR 550


>gi|220933542|ref|YP_002512441.1| DEAD/DEAH box helicase domain-containing protein [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219994852|gb|ACL71454.1| DEAD/DEAH box helicase domain-containing protein [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 432

 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK MA+ L  +L   +I+V  +  +V   +R  +++     +F VLV  ++  
Sbjct: 264 RSMVFVNTKHMADKLEAWLKGNDIKVAVLSGDVPQQKRQRLLKQFENDEFQVLVATDVAA 323

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GL IP+   V   D  + G        +  IGR  R
Sbjct: 324 RGLHIPDVSHVFNFDLPQSG-----EDYVHRIGRTGR 355


>gi|153828264|ref|ZP_01980931.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           623-39]
 gi|148876218|gb|EDL74353.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           623-39]
          Length = 983

 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 68/143 (47%), Gaps = 12/143 (8%)

Query: 541 QGIIVEQIIRPTGLVDPPV---EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           Q +  ++I    G  DP     ++ ++R + E VY E    A++  R L   ++K+ A+ 
Sbjct: 406 QAVNYQEIPWRNGKFDPNTLDNKLATSR-RAEHVYREWQ--AKKQTRTLAFCVSKKHADF 462

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           + +Y   + I    ++S+   + R + ++ L  GK +++  ++L  EG D+P    + + 
Sbjct: 463 MAQYFVAKGIHAIAVYSD-SAVRRNQALQWLDQGKIEIIFSVDLFNEGTDLPSIDTILMA 521

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
              +     SK   +Q +GR  R
Sbjct: 522 RPTE-----SKILFLQQLGRGLR 539


>gi|94971575|ref|YP_593623.1| transcription-repair coupling factor [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553625|gb|ABF43549.1| transcription-repair coupling factor [Candidatus Koribacter
           versatilis Ellin345]
          Length = 1182

 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 80/196 (40%), Gaps = 21/196 (10%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQL------YSEFKNFFPHNAVEYFVSY 228
           G+T S +    A   +A  +P IV+ P+   A +L      Y E       +AV      
Sbjct: 37  GLTPSARALHYALFSKATLKPLIVVVPSNRAAEELLPIVQAYCELTGTAHADAV------ 90

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS-VSCIYGIGSV 287
                    +P  D    +  S + +I   R +A   ++      V++  V+        
Sbjct: 91  -------VMLPAYDVLPYENLSPHPEIQEARAAALWKIVSGTARFVIAPFVATAMHYRPA 143

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           E Y  +   +  G+S++  EL + L    Y   D+  + G + + G  ++I+P   E   
Sbjct: 144 EFYFDLTKVINRGNSIDSDELRAHLNTSGYSTVDVVEMPGEYALRGGILDIYPPESEHPV 203

Query: 348 WRVSMFGNDIEEISEF 363
            R+ +FG+++E I +F
Sbjct: 204 -RIELFGDEVESIRKF 218


>gi|58337584|ref|YP_194169.1| ATP-dependent DNA helicase RecG [Lactobacillus acidophilus NCFM]
 gi|58254901|gb|AAV43138.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM]
          Length = 678

 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 15/146 (10%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRI-----LLT---VLTKRMAEDLTEYLYER--N 606
           P +      +Q++DVY  ++    QG +I     L+T    L  + AE+L E L     +
Sbjct: 440 PIISSWKTSSQMKDVYKRMHEQLDQGFQIYAVTPLITDSETLDLKNAEELHEKLSHDFPD 499

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
            +V  +H ++  +++ EI+     G+ ++LV  +++  G+D+    ++ I +AD+ G   
Sbjct: 500 KKVVLLHGQMPGVKKDEIMSAFASGEINILVTTSVIEVGVDVANANMMIIYNADRFGL-- 557

Query: 667 SKTSLIQTIGRAARN-VNSKVILYAD 691
             + L Q  GR  R    S  +  AD
Sbjct: 558 --SQLHQLRGRIGRGETQSYCVFIAD 581



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 3/100 (3%)

Query: 560 EIRSART--QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T   V  ++  I    Q  L +   +L  +  + + E L    IRV  + S  K
Sbjct: 284 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPFGIRVALLTSNTK 343

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           TLER EI R+L  G  +V++G + L+++ +   + GLV I
Sbjct: 344 TLERREIYRELTDGTINVVIGTHALIQKNVIFKKLGLVII 383


>gi|11513344|pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
 gi|11513345|pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
          Length = 394

 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD I++      + ++   T+R  E+LT  L      V  ++S++   ER  I ++ R
Sbjct: 252 DLYDSISVT-----QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFR 306

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   +L+  +LL  G+D+ +  LV   D  A+KE ++
Sbjct: 307 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 344


>gi|330873209|gb|EGH07358.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 344

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 8/96 (8%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L+  L E  +RV  +H  +K  E+  I+ + + G   +LV   ++  G+D+P   L+ 
Sbjct: 160 EELSSALGE--VRVGLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLMI 217

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILY 689
           I + ++ G       L Q  GR  R   V+  V+LY
Sbjct: 218 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLY 249


>gi|330835320|ref|YP_004410048.1| DNA repair helicase RAD25 [Metallosphaera cuprina Ar-4]
 gi|329567459|gb|AEB95564.1| DNA repair helicase RAD25 [Metallosphaera cuprina Ar-4]
          Length = 443

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EI+   R G + V+V  N+  EG+D+P+  +  +L     G   +   ++Q +GR  
Sbjct: 357 ERKEILSKFRTGDYKVIVASNVFDEGVDVPDASVGIVL-----GGYGTSRQMMQRLGRIL 411

Query: 680 RNVNSKVILYADTITKS 696
           R    KV    + ++K 
Sbjct: 412 RKSEGKVATLVEIVSKG 428


>gi|329943213|ref|ZP_08291987.1| transcription-repair coupling factor [Chlamydophila psittaci Cal10]
 gi|332287793|ref|YP_004422694.1| transcription-repair coupling factor [Chlamydophila psittaci 6BC]
 gi|325507232|gb|ADZ18870.1| transcription-repair coupling factor [Chlamydophila psittaci 6BC]
 gi|328814760|gb|EGF84750.1| transcription-repair coupling factor [Chlamydophila psittaci Cal10]
 gi|328915051|gb|AEB55884.1| transcription-repair coupling factor [Chlamydophila psittaci 6BC]
          Length = 1083

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 15/130 (11%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K++R++SE+++   +    +L+Q     L+  +  TP  S+    H +++  F+    Y 
Sbjct: 507 KRSRDLSEKSL---ILYAEKLLQ-----LEAQRSTTP--SFIYPPHGEEVIKFEESFPYE 556

Query: 149 PSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ  AI Q+   + S + + +L+ G  G GKT   M   ++A+   QR  IVM P  
Sbjct: 557 ETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAVCDGQRQVIVMVPTT 616

Query: 204 ILAAQLYSEF 213
           ILA Q Y  F
Sbjct: 617 ILANQHYETF 626


>gi|309790907|ref|ZP_07685449.1| transcription-repair coupling factor [Oscillochloris trichoides
           DG6]
 gi|308227021|gb|EFO80707.1| transcription-repair coupling factor [Oscillochloris trichoides
           DG6]
          Length = 1171

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 77/177 (43%), Gaps = 17/177 (9%)

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
           + Q+ LL +LV + Y+        G     G  ++++PS  +D   R+  FG++IE +  
Sbjct: 153 LNQERLLRTLVARGYRPTSAVTAPGEINRRGGIVDLWPSA-DDRPLRIEFFGDEIESLRR 211

Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
           F P T +  + ++   I  +  +  P      A+ +I+    +   +L +E         
Sbjct: 212 FDPATQRSDQRLDAASI--SPPHEIPLWNREQALAWIE---SLDCTDLRREA-------- 258

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNP-GEPPPTLFEYIPEDSLLFVDESHV 478
           +      LE L      +    Y+ +   R P G   PTL +++P + L+ + E+H+
Sbjct: 259 QAEWEAALERLRAGERFEGRAFYAPFF--RAPVGPASPTLLDHLPPECLVLLSEAHM 313


>gi|300704701|ref|YP_003746304.1| DEAD/DEAH box helicase [Ralstonia solanacearum CFBP2957]
 gi|299072365|emb|CBJ43703.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum CFBP2957]
          Length = 603

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I+ T  TKR A+ L E L E       +H ++    R   +  LR G   +LV  ++   
Sbjct: 297 IVFTA-TKRDADSLAERLTETGFAAGALHGDMHQGARNRTLTALRRGHLRILVATDVAAR 355

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           G+D+P+   V   D  K+         +  IGR  R   S + +
Sbjct: 356 GIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGIAI 394


>gi|258593268|emb|CBE69607.1| Transcription-repair-coupling factor (TRCF) (ATP-dependent helicase
           mfd) [NC10 bacterium 'Dutch sediment']
          Length = 1152

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 46/239 (19%), Positives = 89/239 (37%), Gaps = 38/239 (15%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I +++  + S      L G+ G+ K   ++++     RP +V+  +   A  L  + + F
Sbjct: 12  IGEIVDRLDSGADALYLTGLFGASKALILSQIARRSGRPLVVVTSSSAEAELLAKDLQVF 71

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DCIVV 275
           F                      R    +  E   + +    R +    L  +N D  VV
Sbjct: 72  F----------------------RDSVGVMAERDEDPETGYQRITCLTGLATKNCDLAVV 109

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
              + +  +    +       L +G  + + EL+  L    Y+R      RG + + G+ 
Sbjct: 110 CLQAALERLAPPSAILGAAFTLYVGRLIARDELVGVLETGGYRRVHQTTDRGEYSLRGNL 169

Query: 336 IEIFP-------------SHLE--DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           +++FP               +E  D   R   FG++I E+  F P T + I +VE + +
Sbjct: 170 LDLFPLTPSLNGSTGLTTGRVEPPDCPVRAEFFGDEILELRAFDPATQRSIGSVEQVTV 228


>gi|260768003|ref|ZP_05876937.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972]
 gi|260616033|gb|EEX41218.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972]
          Length = 540

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 33/67 (49%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TKR A  L  +L E  I+   +H       R   + + + G+  VLV  ++  
Sbjct: 245 QVLVFTRTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFKSGELRVLVATDIAA 304

Query: 644 EGLDIPE 650
            G+DIP+
Sbjct: 305 RGIDIPQ 311


>gi|257867932|ref|ZP_05647585.1| ATP-dependent DNA helicase RecQ [Enterococcus casseliflavus EC30]
 gi|257874262|ref|ZP_05653915.1| ATP-dependent DNA helicase RecQ [Enterococcus casseliflavus EC10]
 gi|257802015|gb|EEV30918.1| ATP-dependent DNA helicase RecQ [Enterococcus casseliflavus EC30]
 gi|257808426|gb|EEV37248.1| ATP-dependent DNA helicase RecQ [Enterococcus casseliflavus EC10]
          Length = 588

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 98/241 (40%), Gaps = 31/241 (12%)

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +LL VDE+H  I Q    +R  +           RL   +DN       W   +PT + +
Sbjct: 132 ALLAVDEAHC-ISQWGHDFRPSY----------LRLAETIDN-------WE-QKPTIVAL 172

Query: 529 SATPG---SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
           +AT     + ++E    I  E  ++ TG     +  +  + Q +D Y    L   QG   
Sbjct: 173 TATATPKVAEDIENLLSIPAENQVK-TGFARENLAFQVVKDQ-KDTYITTYLKMNQGQSG 230

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   T++  E +   L   ++ V Y H  +   ER     +    +  V+V  N    G
Sbjct: 231 IIYASTRKEVERIYHLLKHEHVSVGYYHGGLSEEERSFFQEEFLYDRLQVMVATNAF--G 288

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV--NSKVILYADTITKSIQLAIDE 703
           + I +  +  ++ A   G L    S  Q  GRA R+   +  ++LYA    +  Q  ID+
Sbjct: 289 MGINKSNVRFVIHAQIPGNLE---SYYQEAGRAGRDGEPSDAILLYAPQDMQIQQFFIDQ 345

Query: 704 T 704
           +
Sbjct: 346 S 346


>gi|227904224|ref|ZP_04022029.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
 gi|227867872|gb|EEJ75293.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
          Length = 682

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 15/146 (10%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRI-----LLT---VLTKRMAEDLTEYLYER--N 606
           P +      +Q++DVY  ++    QG +I     L+T    L  + AE+L E L     +
Sbjct: 444 PIISSWKTSSQMKDVYKRMHEQLDQGFQIYAVTPLITDSETLDLKNAEELHEKLSHDFPD 503

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
            +V  +H ++  +++ EI+     G+ ++LV  +++  G+D+    ++ I +AD+ G   
Sbjct: 504 KKVVLLHGQMPGVKKDEIMSAFASGEINILVTTSVIEVGVDVANANMMIIYNADRFGL-- 561

Query: 667 SKTSLIQTIGRAARN-VNSKVILYAD 691
             + L Q  GR  R    S  +  AD
Sbjct: 562 --SQLHQLRGRIGRGETQSYCVFIAD 585



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 3/100 (3%)

Query: 560 EIRSART--QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T   V  ++  I    Q  L +   +L  +  + + E L    IRV  + S  K
Sbjct: 288 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPFGIRVALLTSNTK 347

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           TLER EI R+L  G  +V++G + L+++ +   + GLV I
Sbjct: 348 TLERREIYRELTDGTINVVIGTHALIQKNVIFKKLGLVII 387


>gi|297191821|ref|ZP_06909219.1| ATP-dependent DNA helicase RecG [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197722012|gb|EDY65920.1| ATP-dependent DNA helicase RecG [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 738

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +   ++ +++R    G  DVLV   ++  G+++P    + I+DAD+ G  
Sbjct: 554 GLRVEVLHGRMAPDDKDDVMRRFSAGDVDVLVATTVIEVGVNVPNATAMVIMDADRFGV- 612

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R     + L
Sbjct: 613 ---SQLHQLRGRVGRGSAPGLCL 632


>gi|161503691|ref|YP_001570803.1| transcription-repair coupling factor [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865038|gb|ABX21661.1| hypothetical protein SARI_01775 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 1148

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 61/303 (20%), Positives = 124/303 (40%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHVGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E   +
Sbjct: 130 --------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQ-PY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + +    
Sbjct: 181 RLDFFDDEIDSLRLFDADTQRTLEEVEVINLLPAHEF----PTDKAAIELFRSQWR-DTF 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E++++     A+ + Q+++         G+  +   Y + L      EP P LF Y P +
Sbjct: 236 EVKRD-----AEHIYQQVS--------KGTLPAGIEYWQPLFF---SEPLPPLFSYFPAN 279

Query: 469 SLL 471
           +L+
Sbjct: 280 TLV 282


>gi|90075746|dbj|BAE87553.1| unnamed protein product [Macaca fascicularis]
          Length = 396

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 231 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKGQPERDWVLNEFRSGKAPIL 290

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N
Sbjct: 291 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN 332


>gi|88602972|ref|YP_503150.1| Hef nuclease [Methanospirillum hungatei JF-1]
 gi|88188434|gb|ABD41431.1| helicase-like protein [Methanospirillum hungatei JF-1]
          Length = 750

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 10/120 (8%)

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +I  I   R G+F VLV  ++  EGLDIP   +V   +      + S+   IQ  GR  R
Sbjct: 416 QIATISRFREGEFSVLVATSVGEEGLDIPSTDVVIFYEP-----VPSEIRSIQRKGRTGR 470

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +   ++I+     T      I   +RRREK +    K   N    ++KI++   P+ L+D
Sbjct: 471 HNTGRIIVLVTRKTTDETFQI--VSRRREKAMVTGMK---NLTGHEKKILQTALPLDLDD 525


>gi|47086809|ref|NP_997777.1| probable ATP-dependent RNA helicase DDX5 [Danio rerio]
 gi|37362204|gb|AAQ91230.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Danio rerio]
          Length = 518

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  +DLT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 345 KTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILIATDVAS 404

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            GLD+ +   V   D     +  +    I  IGR AR+
Sbjct: 405 RGLDVEDVKFVINFD-----YPNNSEDYIHRIGRTARS 437


>gi|18395852|ref|NP_566141.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|16226725|gb|AAL16243.1|AF428313_1 AT3g01540/F4P13_9 [Arabidopsis thaliana]
 gi|15215694|gb|AAK91393.1| AT3g01540/F4P13_9 [Arabidopsis thaliana]
 gi|32306509|gb|AAP78938.1| At3g01540 [Arabidopsis thaliana]
 gi|332640163|gb|AEE73684.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
          Length = 618

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I  + + G ++++   TKRM + LT  L  R      +H +    ER  ++   R G+
Sbjct: 394 EQILRSQEPGSKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGR 452

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             VLV  ++   GLD+ +  + A+++ D   F       +  IGR  R
Sbjct: 453 TPVLVATDVAARGLDVKD--IRAVVNYD---FPNGVEDYVHRIGRTGR 495


>gi|23098975|ref|NP_692441.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
 gi|22777203|dbj|BAC13476.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 676

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           E  Y  +IR+  MH  +   E+ +++R     K  VLV   ++  G+++P   ++ I DA
Sbjct: 491 EAYYSDDIRIGLMHGRLTANEKEDVMRQFAENKIQVLVSTTVVEVGVNVPNATIMIIYDA 550

Query: 660 DKEGFLRSKTSLIQTIGRAARN 681
           ++ G     + L Q  GR  R 
Sbjct: 551 ERFGL----SQLHQLRGRVGRG 568


>gi|30678365|ref|NP_850492.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|42572223|ref|NP_974206.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|79295442|ref|NP_001030619.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|108861885|sp|Q8H136|RH14_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 14
 gi|6016713|gb|AAF01539.1|AC009325_9 RNA helicase, DRH1 [Arabidopsis thaliana]
 gi|3149952|dbj|BAA28347.1| DRH1 [Arabidopsis thaliana]
 gi|332640162|gb|AEE73683.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
 gi|332640164|gb|AEE73685.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
 gi|332640165|gb|AEE73686.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
          Length = 619

 Score = 40.8 bits (94), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I  + + G ++++   TKRM + LT  L  R      +H +    ER  ++   R G+
Sbjct: 394 EQILRSQEPGSKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGR 452

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             VLV  ++   GLD+ +  + A+++ D   F       +  IGR  R
Sbjct: 453 TPVLVATDVAARGLDVKD--IRAVVNYD---FPNGVEDYVHRIGRTGR 495


>gi|281211187|gb|EFA85353.1| hypothetical protein PPL_02356 [Polysphondylium pallidum PN500]
          Length = 771

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 8/115 (6%)

Query: 590 LTKRMAEDL-TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           L KR+ + L T+   +R  ++  MH ++K  ER + I+D + GK  VL+  ++L  G+ I
Sbjct: 564 LQKRLEKSLATDKSKKRPTKIGCMHGDMKQEERDQTIKDFKSGKTTVLISTDILGRGIHI 623

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSIQLAI 701
                +   D     F  S    I  +GR  R  N    V  +  TI K++   +
Sbjct: 624 NNLRFIINYD-----FPLSLDQYIHRVGRTGRQGNKGHSVSYFDPTIDKTMATGL 673


>gi|271969202|ref|YP_003343398.1| ATP-dependent DNA helicase RecG [Streptosporangium roseum DSM
           43021]
 gi|270512377|gb|ACZ90655.1| ATP-dependent DNA helicase RecG [Streptosporangium roseum DSM
           43021]
          Length = 723

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 597 DLTEYLYE---RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           D+ + L E     +R   +H ++   E+  ++R    G+ DV+V   ++  G+D+P   +
Sbjct: 527 DVAQMLSEGPLHGLRTAVLHGKLPPEEKDAVMRAFTRGETDVMVATTVIEVGVDVPNSSV 586

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARN 681
           + I+DAD+ G     + L Q  GR  R 
Sbjct: 587 MVIMDADRFGV----SQLHQLRGRVGRG 610


>gi|226292592|gb|EEH48012.1| ATP-dependent RNA helicase DED1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 687

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L+++L +  +    +H +    ER   +   R G+  +LV   +   G
Sbjct: 460 LVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTGRCPILVATAVAARG 519

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   E         +  IGR  R  N+ +
Sbjct: 520 LDIPNVTHVINYDLPNE-----IDDYVHRIGRTGRAGNTGL 555


>gi|194880776|ref|XP_001974538.1| GG21041 [Drosophila erecta]
 gi|190657725|gb|EDV54938.1| GG21041 [Drosophila erecta]
          Length = 1729

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 15/115 (13%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G+ ++++  ++L EG+D+  C  V ILD      L++    +QT GR AR+ N+
Sbjct: 454 IQKFREGEANLMICSSVLEEGIDVQACNYVLILDP-----LKTFNMYVQTKGR-ARSPNA 507

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
             +L+A  +         E T+  ++  ++   H    + +K +++E  +P + E
Sbjct: 508 SFVLFASEL---------EETKISKQISQYRTAHAEIAEYLKYRVLERFEPEMYE 553


>gi|189082538|sp|A6RIS1|MPH1_BOTFB RecName: Full=ATP-dependent DNA helicase mph1
          Length = 1229

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++E IR  + G  +V+V  ++  EGLDI E  L+   D+       S   ++Q +GR  
Sbjct: 690 KQLETIRKFKAGGINVIVATSIGEEGLDIGEVDLIVCYDSSS-----SPIRMLQRMGRTG 744

Query: 680 RNVNSKVIL 688
           R    K++L
Sbjct: 745 RKRAGKIVL 753


>gi|167758784|ref|ZP_02430911.1| hypothetical protein CLOSCI_01126 [Clostridium scindens ATCC 35704]
 gi|167663524|gb|EDS07654.1| hypothetical protein CLOSCI_01126 [Clostridium scindens ATCC 35704]
          Length = 1114

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++ V Y H ++K  +   I+ D   G+ DVLV   ++  GLDI     + I DAD  G  
Sbjct: 799 DVTVEYAHGQMKEHQLERIMYDFINGEIDVLVSTTIIETGLDISNVNTMIIHDADHLGL- 857

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 858 ---SQLYQLRGRVGRS 870


>gi|104773512|ref|YP_618492.1| DEAD-box ATP dependent DNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116513507|ref|YP_812413.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103422593|emb|CAI97196.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116092822|gb|ABJ57975.1| Superfamily II DNA and RNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325125143|gb|ADY84473.1| ATP-dependent RNA helicase-like protein [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 483

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++    R+++++  + G+ D+LV  ++   GLDI  
Sbjct: 250 TKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILVATDVAARGLDI-- 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            G+  + + D     +   S +  IGR  R   S
Sbjct: 308 SGVTHVYNYD---IPQDPDSYVHRIGRTGRAGKS 338


>gi|50550293|ref|XP_502619.1| YALI0D09449p [Yarrowia lipolytica]
 gi|74659944|sp|Q6C9P3|DBP3_YARLI RecName: Full=ATP-dependent RNA helicase DBP3
 gi|49648487|emb|CAG80807.1| YALI0D09449p [Yarrowia lipolytica]
          Length = 532

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+   R +   + D +   A    +IL+  L K+ A  +   L  R   V  +H ++  
Sbjct: 345 VEVLDPRAKEGRLLDLLRQYANDDFKILIFALYKKEATRVENTLTRRGYGVAAIHGDLSQ 404

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            +R + + + + G+ ++L+  ++   GLDIP   LV  L      F  +    +  IGR 
Sbjct: 405 QQRTKALDEFKKGEKNILLATDVAARGLDIPNVKLVINLT-----FPLTVEDYVHRIGRT 459

Query: 679 AR 680
            R
Sbjct: 460 GR 461


>gi|117647206|ref|NP_001071115.1| probable ATP-dependent RNA helicase DDX4 [Rattus norvegicus]
 gi|2500526|sp|Q64060|DDX4_RAT RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog;
           Short=rVLG
 gi|806464|gb|AAB33364.1| vasa-like gene protein [Rattus sp.]
          Length = 713

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 527 RPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 586

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADT 692
            GLDI     V   +        +    +  IGR  R  N+ + I + DT
Sbjct: 587 RGLDIENVQHVINFN-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDT 631


>gi|22537822|ref|NP_688673.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae 2603V/R]
 gi|25011766|ref|NP_736161.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae NEM316]
 gi|76788227|ref|YP_330296.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae A909]
 gi|77406424|ref|ZP_00783482.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae H36B]
 gi|77412547|ref|ZP_00788841.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae CJB111]
 gi|22534716|gb|AAN00546.1|AE014268_6 ATP-dependent DNA helicase RecG [Streptococcus agalactiae 2603V/R]
 gi|24413306|emb|CAD47385.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563284|gb|ABA45868.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae A909]
 gi|77161398|gb|EAO72415.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae CJB111]
 gi|77174957|gb|EAO77768.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae H36B]
          Length = 671

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L+ Y +E   +V  +H  +K  E+  I++D +  K  +LV   ++  G+++P   ++ I
Sbjct: 487 ELSTY-FEGIAKVALVHGRMKNDEKDAIMQDFKDKKSHILVSTTVIEVGVNVPNATIMII 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           +DAD+ G     + L Q  GR  R    S  +L A+  T S
Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGYKQSYAVLVANPKTDS 582


>gi|332159041|ref|YP_004424320.1| putative protein DNA repair protein RAD25 [Pyrococcus sp. NA2]
 gi|331034504|gb|AEC52316.1| putative protein DNA repair protein RAD25 [Pyrococcus sp. NA2]
          Length = 732

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 5/82 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  + S++   ER+++I+ ++ G  D+++   +  EG+DIPE GL+ + D  K     S
Sbjct: 339 RVEVLTSDMSKDERLDLIKRVKEGLVDIIISTLVGEEGVDIPEAGLLVMTDIPK-----S 393

Query: 668 KTSLIQTIGRAARNVNSKVILY 689
                Q +GR  R  + + I Y
Sbjct: 394 PLRFYQRLGRLIRVASPRRIKY 415


>gi|329119861|ref|ZP_08248535.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464017|gb|EGF10328.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 444

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   S + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRSGIAV 347


>gi|326527477|dbj|BAK08013.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 614

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G + ++   TKR A+ L+ Y   R ++ + +H ++   +R   ++  R G+F  L+  +
Sbjct: 348 KGGKCIVFTQTKRDADRLS-YTMGRTVQCQALHGDITQGQRERTLQGFREGRFSTLIATD 406

Query: 641 LLREGLDIPECGLV 654
           +   GLDIP   LV
Sbjct: 407 VAARGLDIPNVDLV 420


>gi|320536875|ref|ZP_08036868.1| ATP-dependent DNA helicase RecG [Treponema phagedenis F0421]
 gi|320146258|gb|EFW37881.1| ATP-dependent DNA helicase RecG [Treponema phagedenis F0421]
          Length = 684

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 590 LTKRMAEDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           L+ + AE + +YL +   R  V  +HS++   E+ EI+ + + GK  +L   +++  G+D
Sbjct: 503 LSLKSAEQMYQYLQQGFPRHKVALIHSKIPENEQKEIMEEFKAGKIHILAATSVIEVGVD 562

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTIT 694
           +P    + I  +++ G     ++L Q  GR  R        ++Y   IT
Sbjct: 563 VPNATCMVIEHSERFGL----SALHQLRGRVGRGGEQSYCFLMYGKNIT 607


>gi|315084648|gb|EFT56624.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
          Length = 630

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 64/126 (50%), Gaps = 8/126 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G+  +LV  ++  
Sbjct: 301 KVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVAA 360

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVILYADT-----ITKSI 697
            G+D+   G+  +++ +     ++    I   GRA A+ +   ++ +AD      I K++
Sbjct: 361 RGIDV--TGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADVTRWKLINKAL 418

Query: 698 QLAIDE 703
            L + E
Sbjct: 419 NLELSE 424


>gi|301299240|ref|ZP_07205527.1| helicase C-terminal domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853200|gb|EFK80797.1| helicase C-terminal domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 950

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 9/130 (6%)

Query: 555 VDPPVEIR--SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE--DLTEYLYERNIRVR 610
           VD    +R  +A  +V+ + D+++     G ++   V   R  E  +L +   +   + +
Sbjct: 407 VDETTNLRYLTAPKRVKYILDQLDYYGYSGPKVHGLVFCSRQDEALELAQAFTDAGHQAK 466

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            + ++     R  ++R+L  GK + ++ +NL  EG+DIP    V +L        +S   
Sbjct: 467 ALTNQDSNERRRAVVRELEEGKIEYIITVNLFNEGIDIPCVNQVVMLRN-----TQSSIV 521

Query: 671 LIQTIGRAAR 680
            IQ +GR  R
Sbjct: 522 FIQQLGRGLR 531


>gi|224476319|ref|YP_002633925.1| putative primosomal replication factor Y [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222420926|emb|CAL27740.1| putative primosomal replication factor Y (primosomal protein N')
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 802

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +++ D   GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 594 KLLNDFGEGKGDILLGTQMIAKGLDFPNITLVGVLNADTMLNLPDFRASERTFQLLTQVS 653

Query: 676 GRAARN 681
           GRA R+
Sbjct: 654 GRAGRH 659


>gi|167626971|ref|YP_001677471.1| DNA/RNA helicase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167596972|gb|ABZ86970.1| DNA/RNA helicase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 912

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 26/141 (18%)

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           VE II      D   + RSA   V +V + + LA +                     L +
Sbjct: 395 VEHIIDKANFYDYSGKSRSALMFVSNVDEAVQLATK---------------------LSQ 433

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           R I+ + + S+     R E I +L  G  +++V +++  EG+DIP    V +L       
Sbjct: 434 RGIKAKALSSQDSERVRQETIGELESGLLEIIVTVDIFNEGIDIPCVNQVILLRPT---- 489

Query: 665 LRSKTSLIQTIGRAARNVNSK 685
            +S    IQ +GR  R   SK
Sbjct: 490 -QSAIVYIQQLGRGLRKYKSK 509


>gi|91200730|emb|CAJ73782.1| similar to transcription-repair coupling factor [Candidatus
           Kuenenia stuttgartiensis]
          Length = 1092

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 8/153 (5%)

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-------DCIVVSSVSCIYGIGS 286
           P    P  +     ES   E I   R      L  +N       D IV S  + I  + S
Sbjct: 82  PVTLFPAVEDIFNNESDAYEDIMAQRLFILNQLCRKNKDASHQTDVIVSSIQALIQPVPS 141

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            ++    IV  + G     + L+  L    Y+       +G + + G  I+IFP   E +
Sbjct: 142 KKTIGDNIVSFQKGQEYPMENLIGLLHSHHYQETSQVENQGEYAIRGGIIDIFPFATE-I 200

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             R+  FG++IE +  F   T Q +  + + +I
Sbjct: 201 PCRIEYFGDEIESVRSFNVETQQSVAQINSCQI 233


>gi|80979093|gb|ABB54749.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 15/115 (13%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      +++    +Q+ GR AR   +
Sbjct: 440 IQQFRDGNANLMICSSVLEEGIDVQACNHVFILDP-----VKTFNMYVQSKGR-ARTTEA 493

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           K +L+          A  E  +  ++  ++ K HN   + +K++++E  +P L E
Sbjct: 494 KFVLFT---------ADKEREKTIQQIYQYRKAHNDIAEYLKDRVLEKTEPELYE 539


>gi|56461474|ref|YP_156755.1| DNA helicase RecJ [Idiomarina loihiensis L2TR]
 gi|56180484|gb|AAV83206.1| DNA helicase RecJ [Idiomarina loihiensis L2TR]
          Length = 693

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 8/114 (7%)

Query: 589 VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           VL  + AED    L E+   + +  +H  +K  ++ ++++  + G  D+LV   ++  G+
Sbjct: 498 VLECQAAEDTANDLQEQLPGLSIGLVHGRLKHEQKEQVMQAFKAGDIDLLVATTVIEVGV 557

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKSIQ 698
           D+P   L+ I + ++ G       L Q  GR  R    +  V+LY   ++++ Q
Sbjct: 558 DVPNASLMIIENPERLGL----AQLHQLRGRVGRGSVASHCVLLYHSPLSQTAQ 607


>gi|54026546|ref|YP_120788.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
 gi|54018054|dbj|BAD59424.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
          Length = 1148

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ + + L ER   V  +H ++  ++R + +   R G  DVLV  ++   G+DI
Sbjct: 296 TKRTAQKVADDLAERGFAVGAVHGDLGQVQREKALDKFRKGVIDVLVATDVAARGIDI 353


>gi|88810845|ref|ZP_01126102.1| probable ATP-dependent DNA helicase [Nitrococcus mobilis Nb-231]
 gi|88792475|gb|EAR23585.1| probable ATP-dependent DNA helicase [Nitrococcus mobilis Nb-231]
          Length = 1468

 Score = 40.8 bits (94), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRD 627
           ++YD++    +     L+ V T+R+AE    +L ER     +   H  +    R+E  R 
Sbjct: 265 EIYDQLAGLIEAHKTTLIFVNTRRLAERAARHLAERLGEDAITAHHGSLAREHRLEAERR 324

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           L+ G+   LV    L  G+DI    LV  L     G  R+  +L+Q +GR+   V++
Sbjct: 325 LKNGELRALVATAALELGIDIGAVDLVCQL-----GSPRAIATLLQRVGRSGHAVSA 376


>gi|328553517|gb|AEB24009.1| ATP-dependent DNA helicase RecG [Bacillus amyloliquefaciens TA208]
          Length = 682

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           +Y     V  MH ++ + E+ +++R+    +  VLV   ++  G+++P   ++ I DAD+
Sbjct: 497 VYRGKWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADR 556

Query: 662 EGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691
            G     + L Q  GR  R +  S  IL AD
Sbjct: 557 FGL----SQLHQLRGRVGRGDHQSFCILMAD 583


>gi|322799398|gb|EFZ20748.1| hypothetical protein SINV_08125 [Solenopsis invicta]
          Length = 764

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 586 LLTVLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           LL  +TK++ AE+L   L  +   V  +H ++  LER ++I   +      LV  ++   
Sbjct: 503 LLIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQLERNKVITAFKKKDVSTLVATDVAAR 562

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           GLDIP    V   D  ++  + + T  I   GRA 
Sbjct: 563 GLDIPHIKTVVNYDVARD--IDTHTHRIGRTGRAG 595


>gi|313848365|emb|CBY17369.1| putative transcription-repair coupling factor [Chlamydophila
           psittaci RD1]
          Length = 1085

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 15/130 (11%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K++R++SE+++   +    +L+Q     L+  +  TP  S+    H +++  F+    Y 
Sbjct: 509 KRSRDLSEKSL---ILYAEKLLQ-----LEAQRSTTP--SFIYPPHGEEVIKFEESFPYE 558

Query: 149 PSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ  AI Q+   + S + + +L+ G  G GKT   M   ++A+   QR  IVM P  
Sbjct: 559 ETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAVCDGQRQVIVMVPTT 618

Query: 204 ILAAQLYSEF 213
           ILA Q Y  F
Sbjct: 619 ILANQHYETF 628


>gi|301755880|ref|XP_002913778.1| PREDICTED: nucleolar RNA helicase 2-like [Ailuropoda melanoleuca]
          Length = 794

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK+ A++L++ +  +    + +H ++   +R   ++  R G F VLV  N+  
Sbjct: 442 RTIIFCETKKEAQELSQNVSIKQ-DAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAA 500

Query: 644 EGLDIPECGLV 654
            GLDIPE  LV
Sbjct: 501 RGLDIPEVDLV 511


>gi|315502398|ref|YP_004081285.1| ATP-dependent DNA helicase recg [Micromonospora sp. L5]
 gi|315409017|gb|ADU07134.1| ATP-dependent DNA helicase RecG [Micromonospora sp. L5]
          Length = 733

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  +   E+  ++R    G+ DVLV   ++  G+++P   ++ +LDAD+ G  
Sbjct: 549 GLRIGVLHGRLPADEKDAVMRAYADGELDVLVATTVVEVGVNVPNATVMIVLDADRFGV- 607

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R   + + L
Sbjct: 608 ---SQLHQLRGRVGRGSAAGLCL 627


>gi|312111729|ref|YP_003990045.1| primosomal protein N' [Geobacillus sp. Y4.1MC1]
 gi|311216830|gb|ADP75434.1| primosomal protein N' [Geobacillus sp. Y4.1MC1]
          Length = 804

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 15/102 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+++ E+LT+ L E     R +  +V T  R      ++ +   GK D+L+G  ++ +GL
Sbjct: 564 TQKVEEELTKLLPE----ARVIRMDVDTTSRKGAHERLLAEFGEGKADILLGTQMIAKGL 619

Query: 647 DIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           D P+  LV +L AD    L       ++   L Q  GRA R+
Sbjct: 620 DFPKVTLVGVLAADTTLHLPDFRASEKTFQLLTQVSGRAGRH 661



 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 150 SGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFTMAKVIEAMQR---PAIVMAPNKIL 205
           + +Q  A++ +++ + + + +V LL GVTGSGKT    + IE + R    AIV+ P   L
Sbjct: 268 TAEQEKALSSVIESVRTNKHEVFLLYGVTGSGKTEVYMQAIEEVLRQGKEAIVLVPEISL 327

Query: 206 AAQLYSEFKNFF 217
             Q+   FK  F
Sbjct: 328 TPQMVKRFKGRF 339


>gi|290581000|ref|YP_003485392.1| putative late competence protein [Streptococcus mutans NN2025]
 gi|254997899|dbj|BAH88500.1| putative late competence protein [Streptococcus mutans NN2025]
          Length = 433

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T +R+E + + R G   +LV   +L  G+  P C  V ++ ++   +L +K+SL+Q  GR
Sbjct: 337 TTDRLEKVENFRKGNTQILVSTTILERGVTFP-CVDVFVMMSNH--YLFTKSSLVQIAGR 393

Query: 678 AARNV---NSKVILYADTITKSIQLAIDETTRRREK 710
             R+    + K++ + + + ++++ AI E     +K
Sbjct: 394 VGRSADRPDGKLLFFHNGMNRAMKKAIMEIKTMNKK 429


>gi|224064557|ref|XP_002301515.1| predicted protein [Populus trichocarpa]
 gi|222843241|gb|EEE80788.1| predicted protein [Populus trichocarpa]
          Length = 807

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 5/116 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   +D+   L ++  +V  +H +     R+EI++  + G + VLV  ++   
Sbjct: 473 VLVFASKKATVDDIESQLAQKAFKVAALHGDKDQASRMEILQKFKSGVYHVLVATDVAAR 532

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           GLDI     V   D  +E  +      +  IGR  R  +   I Y     K  + A
Sbjct: 533 GLDIKSIKSVVNFDIAREMDVH-----VHRIGRTGRAGDKDGIAYTLITQKEARFA 583


>gi|221230954|ref|YP_002510106.1| transcription-repair coupling factor [Streptococcus pneumoniae ATCC
           700669]
 gi|225853617|ref|YP_002735129.1| transcription-repair coupling factor [Streptococcus pneumoniae JJA]
 gi|220673414|emb|CAR67872.1| putative putative transcription-repair coupling factor
           [Streptococcus pneumoniae ATCC 700669]
 gi|225722629|gb|ACO18482.1| transcription-repair coupling factor [Streptococcus pneumoniae JJA]
          Length = 1169

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 130/309 (42%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  +++      A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V + V+    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIVASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|241568989|ref|XP_002402624.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215500065|gb|EEC09559.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 1081

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++ +++  R G ++VLV   +  EGLDI E  L+   DA K     S   L+Q +GR  
Sbjct: 499 EQLLVVKRFRDGGYNVLVSTCVGEEGLDIGEIDLIVCYDAPK-----SPIRLVQRMGRTG 553

Query: 680 RNVNSKVIL 688
           R    ++++
Sbjct: 554 RKRAGRIVV 562


>gi|126343379|ref|XP_001380649.1| PREDICTED: similar to Gu protein [Monodelphis domestica]
          Length = 902

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDL 628
           + D I + +    R ++   TK+ A++L+      +I+   + +H ++   +R   ++  
Sbjct: 580 IGDVIQVYSGSHGRTIIFCETKKEAQELS---LNESIKQDAQSLHGDIPQKQREITLQGF 636

Query: 629 RLGKFDVLVGINLLREGLDIPECGLV 654
           R GKF VLV  N+   GLDIPE  LV
Sbjct: 637 RNGKFGVLVATNVAARGLDIPEVDLV 662


>gi|169860811|ref|XP_001837040.1| ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130]
 gi|116501762|gb|EAU84657.1| ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130]
          Length = 396

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LTE +   N  V  MH E+   ER  I+ + R
Sbjct: 255 DLYDTLTIT-----QAVIFCNTRRKVDWLTEKMRASNFTVSSMHGEMVQKERDAIMAEFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  A++E +       I  IGR+ R
Sbjct: 310 SGTSRVLITTDVWARGIDVQQVSLVINYDLPANRENY-------IHRIGRSGR 355


>gi|30249476|ref|NP_841546.1| priA; primosomal protein N' (replication factor Y) [Nitrosomonas
           europaea ATCC 19718]
 gi|30138839|emb|CAD85416.1| probable priA; primosomal protein N' (replication factor Y)
           [Nitrosomonas europaea ATCC 19718]
          Length = 730

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 20/112 (17%)

Query: 591 TKRMAEDLTEYLYERNI------RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           T+R+   L  +  E  I       +R+  +  + L+RI        G+ D+LVG  LL +
Sbjct: 490 TQRVEAALIRHFPEARILRVDRDSIRHKGAWQQMLDRIH------RGEADILVGTQLLAK 543

Query: 645 GLDIPECGLVAILDADKEGF---LRSK----TSLIQTIGRAAR-NVNSKVIL 688
           G D P   LV  L+AD   +    R++      LIQ  GRA R NV   V++
Sbjct: 544 GHDFPNLALVCALNADASLYSTDFRAEEHLFAQLIQVAGRAGRANVPGSVLI 595


>gi|22331253|ref|NP_188872.2| PMH2 (putative mitochondrial RNA helicase 2); ATP binding /
           ATP-dependent helicase/ helicase/ nucleic acid binding
           [Arabidopsis thaliana]
 gi|75335516|sp|Q9LUW5|RH53_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 53
 gi|9293867|dbj|BAB01770.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|17064852|gb|AAL32580.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|20259816|gb|AAM13255.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|332643101|gb|AEE76622.1| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
          Length = 616

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 8/121 (6%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G + ++   TKR A+ L+ Y   R+ +   +H ++   +R   +   R G F++LV  +
Sbjct: 348 KGGKCIVFTQTKRDADRLS-YALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATD 406

Query: 641 LLREGLDIPECGLVAI--LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           +   GLD+P   L+    L  + E F+          GRA +   S +++Y+   +++++
Sbjct: 407 VAARGLDVPNVDLIIHYELPNNTETFVHRTGR----TGRAGKK-GSAILIYSQDQSRAVK 461

Query: 699 L 699
           +
Sbjct: 462 I 462


>gi|77408999|ref|ZP_00785719.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae COH1]
 gi|77172383|gb|EAO75532.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae COH1]
          Length = 671

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L+ Y +E   +V  +H  +K  E+  I++D +  K  +LV   ++  G+++P   ++ I
Sbjct: 487 ELSTY-FEGIAKVALVHGRMKNDEKDAIMQDFKDKKSHILVSTTVIEVGVNVPNATIMII 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           +DAD+ G     + L Q  GR  R    S  +L A+  T S
Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGYKQSYAVLVANPKTDS 582


>gi|95928230|ref|ZP_01310978.1| primosomal protein N' [Desulfuromonas acetoxidans DSM 684]
 gi|95135501|gb|EAT17152.1| primosomal protein N' [Desulfuromonas acetoxidans DSM 684]
          Length = 736

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R+A +L E   E  I      S      + +++  +  G+ D+LVG  ++ +G D   
Sbjct: 500 TERLAAELQERFPEARIARMDRDSTAAKGAQQQLVSRMEAGEVDILVGTQMIAKGHDFGA 559

Query: 651 CGLVAILDADK-------EGFLRSKTSLIQTIGRAAR-NVNSKVIL 688
             LV ILDAD            RS + L Q  GRA R +V  +V++
Sbjct: 560 VTLVGILDADAALNFPDFRAAERSFSLLAQVAGRAGRGDVRGEVLV 605


>gi|326928431|ref|XP_003210383.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like
           [Meleagris gallopavo]
          Length = 604

 Score = 40.8 bits (94), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 417 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKDVLVATDVASK 476

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 477 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 525

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 526 VLMDLKALLLEAKQKVPP 543


>gi|326479821|gb|EGE03831.1| ATP-dependent RNA helicase DBP2 [Trichophyton equinum CBS 127.97]
          Length = 536

 Score = 40.8 bits (94), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  ++V  ++  
Sbjct: 369 KVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVAS 428

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+ +  +  +L+ D   +  +    +  IGR  R
Sbjct: 429 RGIDVRD--ITHVLNHD---YPNNSEDYVHRIGRTGR 460


>gi|293377452|ref|ZP_06623654.1| putative ATP-dependent RNA helicase DbpA [Enterococcus faecium
           PC4.1]
 gi|292643970|gb|EFF62078.1| putative ATP-dependent RNA helicase DbpA [Enterococcus faecium
           PC4.1]
          Length = 425

 Score = 40.8 bits (94), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 78/154 (50%), Gaps = 12/154 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++ +YL  + ++V  +H ++   ER  ++R ++  ++  +V  +L   G+DI  
Sbjct: 252 TKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEYQYVVATDLAARGIDIE- 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKSIQLAIDETTRRR 708
            G+  +++A+           I  +GR  RN    + + LY+    ++I  AI++     
Sbjct: 311 -GVSHVINAE---IPEDLDFFIHRVGRTGRNGLKGTAITLYSPNDEQAID-AIEKLGVSF 365

Query: 709 E----KQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           E    K  E  K ++ N ++ +EK  +V+DP L+
Sbjct: 366 EPKEIKNGEIVKTYDRNRRTKREKSKDVLDPTLI 399


>gi|257876826|ref|ZP_05656479.1| ATP-dependent DNA helicase RecQ [Enterococcus casseliflavus EC20]
 gi|257810992|gb|EEV39812.1| ATP-dependent DNA helicase RecQ [Enterococcus casseliflavus EC20]
          Length = 588

 Score = 40.8 bits (94), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 98/241 (40%), Gaps = 31/241 (12%)

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +LL VDE+H  I Q    +R  +           RL   +DN       W   +PT + +
Sbjct: 132 ALLAVDEAHC-ISQWGHDFRPSY----------LRLAETIDN-------WE-QKPTIVAL 172

Query: 529 SATPG---SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
           +AT     + ++E    I  E  ++ TG     +  +  + Q +D Y    L   QG   
Sbjct: 173 TATATPKVAEDIENLLSIPAENQVK-TGFARENLAFQVVKDQ-KDTYITTYLKMNQGQSG 230

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   T++  E +   L   ++ V Y H  +   ER     +    +  V+V  N    G
Sbjct: 231 IIYASTRKEVERIYHLLKHEHVSVGYYHGGLSEEERSFFQEEFLYDRLQVMVATNAF--G 288

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV--NSKVILYADTITKSIQLAIDE 703
           + I +  +  ++ A   G L    S  Q  GRA R+   +  ++LYA    +  Q  ID+
Sbjct: 289 MGINKSNVRFVIHAQIPGNLE---SYYQEAGRAGRDGEPSDAILLYAPQDMQIQQFFIDQ 345

Query: 704 T 704
           +
Sbjct: 346 S 346


>gi|255713670|ref|XP_002553117.1| KLTH0D09328p [Lachancea thermotolerans]
 gi|238934497|emb|CAR22679.1| KLTH0D09328p [Lachancea thermotolerans]
          Length = 551

 Score = 40.8 bits (94), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 2/96 (2%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TKR  +++T YL +       +H +    ER  ++++ R G   ++V  ++  
Sbjct: 360 KILIFASTKRTCDEITRYLRQDGWPALAIHGDKAQNERDWVLQEFRTGNSPIMVATDVAA 419

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            G+D+   G+  +++ D  G +      I   GRA 
Sbjct: 420 RGIDVK--GINFVINYDMPGNIEDYVHRIGRTGRAG 453


>gi|257055065|ref|YP_003132897.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
 gi|256584937|gb|ACU96070.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
          Length = 449

 Score = 40.8 bits (94), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 10/114 (8%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +AA+QG R +L V TK   + LT  L    +    +H      +R  ++ D R G+  VL
Sbjct: 255 IAARQG-RTILFVRTKHHVDRLTTRLRAAGVPAAALHGGKTQGQRNRVLADFRSGRMPVL 313

Query: 637 VGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  ++   G+ +   GLV  +D  AD + +L          GR AR   S  ++
Sbjct: 314 VATDVAARGIHVDGIGLVLHVDPAADHKDYL-------HRAGRTARAGASGTVV 360


>gi|225680888|gb|EEH19172.1| ATP-dependent RNA helicase ded1 [Paracoccidioides brasiliensis
           Pb03]
          Length = 686

 Score = 40.8 bits (94), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L+++L +  +    +H +    ER   +   R G+  +LV   +   G
Sbjct: 460 LVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTGRCPILVATAVAARG 519

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   E         +  IGR  R  N+ +
Sbjct: 520 LDIPNVTHVINYDLPNE-----IDDYVHRIGRTGRAGNTGL 555


>gi|317124484|ref|YP_004098596.1| ATP-dependent DNA helicase, RecQ family [Intrasporangium calvum DSM
           43043]
 gi|315588572|gb|ADU47869.1| ATP-dependent DNA helicase, RecQ family [Intrasporangium calvum DSM
           43043]
          Length = 728

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           LT   AED+   L E    V       +  ERI + +DLR  +   LV  + L  G D P
Sbjct: 262 LTVSAAEDVAAALREAGYEVAAYTGRTEPGERIRLEQDLRDNRLKALVATSALGMGFDKP 321

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G V  L A       S  +  Q +GRA R      +L
Sbjct: 322 DLGFVLHLGAPS-----SPVAYYQQVGRAGRATERADVL 355


>gi|300812076|ref|ZP_07092524.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496915|gb|EFK31989.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 481

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++    R+++++  + G+ D+LV  ++   GLDI  
Sbjct: 250 TKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILVATDVAARGLDI-- 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            G+  + + D     +   S +  IGR  R   S
Sbjct: 308 SGVTHVYNYD---IPQDPDSYVHRIGRTGRAGKS 338


>gi|242045340|ref|XP_002460541.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
 gi|241923918|gb|EER97062.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
          Length = 711

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 14/130 (10%)

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           ++AR QV  + D I   +  G  I+ T  TK  A +L+  +       R +H +V   +R
Sbjct: 359 KAARAQV--IPDIIRCYSHGGRTIIFTE-TKDSASELSGLIPGS----RALHGDVVQAQR 411

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR- 680
             I+   R GKF VLV  N+   GLDI +  L+   +       R   + I   GR  R 
Sbjct: 412 EVILAGFRGGKFQVLVATNVAARGLDINDVQLIIQCEPP-----RDVEAYIHRSGRTGRA 466

Query: 681 -NVNSKVILY 689
            N    V+LY
Sbjct: 467 GNTGVAVMLY 476


>gi|294934064|ref|XP_002780961.1| eukaryotic translation initiation factor 4A, putative [Perkinsus
           marinus ATCC 50983]
 gi|239891132|gb|EER12756.1| eukaryotic translation initiation factor 4A, putative [Perkinsus
           marinus ATCC 50983]
          Length = 389

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + L E ++E +  V  MH+++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 264 TRRKVDYLAEKMHEADHTVSCMHADLTQEERDLIMREFRSGSSRVLISTDLLARGIDVQQ 323

Query: 651 CGLV 654
             LV
Sbjct: 324 VSLV 327


>gi|294893710|ref|XP_002774608.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239880001|gb|EER06424.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 520

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 2/112 (1%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G ++L+   TKR A+DLT  L         +H + K  ER  ++ + + GK  +++  ++
Sbjct: 357 GSKLLIFTDTKRGADDLTRTLRMDGWPALCIHGDKKQEERDWVLHEFKSGKSPIMIATDV 416

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
              GLD+ +  +  +++ D  G +      I   GRA    N+      D I
Sbjct: 417 ASRGLDVKD--IRHVVNYDFPGQIEDYVHRIGRTGRAGCKGNAYTFFTPDKI 466


>gi|229016238|ref|ZP_04173186.1| DNA/RNA helicase [Bacillus cereus AH1273]
 gi|229022490|ref|ZP_04179023.1| DNA/RNA helicase [Bacillus cereus AH1272]
 gi|228738803|gb|EEL89266.1| DNA/RNA helicase [Bacillus cereus AH1272]
 gi|228745009|gb|EEL95063.1| DNA/RNA helicase [Bacillus cereus AH1273]
          Length = 795

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 11/100 (11%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   + R A  L+ Y  E       +HSE K + R + I+ L   + D +  ++L  
Sbjct: 431 RTIVFCSSIRQAVFLSTYFNENGYSTISLHSETKHISREDAIKQLDSNELDAIFTVDLFN 490

Query: 644 EGLDIPECGLVAILDADKEGFLR---SKTSLIQTIGRAAR 680
           EG+DIP          D   F+R   S T   Q IGR  R
Sbjct: 491 EGVDIP--------SVDTLLFVRPTESLTVFTQQIGRGLR 522


>gi|218704525|ref|YP_002412044.1| transcription-repair coupling factor [Escherichia coli UMN026]
 gi|218431622|emb|CAR12501.1| transcription-repair coupling factor [Escherichia coli UMN026]
          Length = 1148

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|297625572|ref|YP_003687335.1| carboxylic ester hydrolase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|189026828|emb|CAQ16308.1| putative carboxylic ester hydrolase [Propionibacterium
           freudenreichii subsp. shermanii]
 gi|296921337|emb|CBL55890.1| Putative carboxylic ester hydrolase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 1054

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R   IRDLR G+   L  ++L  EG+DIP    V +L   +     S T  +Q +GR  R
Sbjct: 587 REAAIRDLREGRLACLCTVDLFNEGIDIPSIDTVIMLRPTQ-----SATIFLQQLGRGLR 641

Query: 681 NVNSKVIL 688
               K +L
Sbjct: 642 RAPGKSVL 649


>gi|90408322|ref|ZP_01216486.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3]
 gi|90310553|gb|EAS38674.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3]
          Length = 579

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 8/125 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK    +L E L  R  R   ++ ++    R   I  L+ G  D+LV  ++   
Sbjct: 253 VIIFARTKTATVELAERLEARGYRSAALNGDMNQQTRERTIARLKSGGLDILVATDVAAR 312

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+    LV   D   D E ++      I   GRA R    K IL+A    + +  AI+
Sbjct: 313 GLDVERISLVVNYDIPTDTESYVHR----IGRTGRAGR--KGKAILFAAPRERRLLKAIE 366

Query: 703 ETTRR 707
             TR+
Sbjct: 367 RATRQ 371


>gi|40215441|gb|AAR82738.1| SD11113p [Drosophila melanogaster]
          Length = 1640

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 15/115 (13%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      +++    +Q+ GR AR   +
Sbjct: 426 IQQFRDGNANLMICSSVLEEGIDVQACNHVFILDP-----VKTFNMYVQSKGR-ARTTEA 479

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           K +L+          A  E  +  ++  ++ K HN   + +K++++E  +P L E
Sbjct: 480 KFVLFT---------ADKEREKTIQQIYQYRKAHNDIAEYLKDRVLEKTEPELYE 525


>gi|332285682|ref|YP_004417593.1| primosomal protein [Pusillimonas sp. T7-7]
 gi|330429635|gb|AEC20969.1| primosomal protein [Pusillimonas sp. T7-7]
          Length = 703

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 8/79 (10%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARNV- 682
           G+ D+LVG  ++ +G D    GLV +L+AD   F        R    L+Q  GRA R+V 
Sbjct: 499 GEVDLLVGTQMVAKGHDFANLGLVGVLNADAMLFAQDFRAPERLFAQLMQVAGRAGRHVK 558

Query: 683 NSKVILYADTITKSIQLAI 701
             +VI+  D   +++  A+
Sbjct: 559 GGEVIIQTDYPEQAVYQAL 577


>gi|325972110|ref|YP_004248301.1| primosomal protein N' [Spirochaeta sp. Buddy]
 gi|324027348|gb|ADY14107.1| primosomal protein N' [Spirochaeta sp. Buddy]
          Length = 654

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 8/72 (11%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGR 677
           + D R G  D+L+G  ++ +GL+ P+  LV I+ AD    +       R+ + L+Q  GR
Sbjct: 450 LSDFRQGSIDILLGTQMVAKGLNFPKVELVGIVLADSGMNIPDFRSQERTFSLLVQVSGR 509

Query: 678 AAR-NVNSKVIL 688
           A R N   KVI+
Sbjct: 510 AGRYNDQGKVII 521


>gi|315187033|gb|EFU20790.1| ATP-dependent DNA helicase RecG [Spirochaeta thermophila DSM 6578]
          Length = 683

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 593 RMAEDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           R AE + E+L  R  R  V  +HS +   E+  I+R+   GK  +LV  +++  G+++P 
Sbjct: 488 RNAESMVEFLRRRYPRWKVALIHSRIPDEEKERIMREFMQGKIRILVATSVIEVGVNVPT 547

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
              + I  A++ G      +L Q  GR  R+
Sbjct: 548 ATCIVIEHAERFGL----ATLHQLRGRVGRS 574


>gi|331662525|ref|ZP_08363448.1| transcription-repair coupling factor [Escherichia coli TA143]
 gi|331060947|gb|EGI32911.1| transcription-repair coupling factor [Escherichia coli TA143]
          Length = 1148

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 231 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|296169013|ref|ZP_06850678.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295896310|gb|EFG75967.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 443

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ + + L ER  +V  +H ++  + R + ++  R G  DVLV  ++   G+DI
Sbjct: 271 TKRTAQKVADELAERGFKVGAVHGDLGQIAREKALKAFRNGDIDVLVATDVAARGIDI 328


>gi|281344701|gb|EFB20285.1| hypothetical protein PANDA_020280 [Ailuropoda melanoleuca]
          Length = 645

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++ V  + +A+DL+  L  + I V+ +H +    +R   + D R GK  VL+  +L  
Sbjct: 488 KVIVFVRRRLVADDLSSDLSIQGITVQSLHGDRDQHDRERALEDFRSGKVKVLIATDLAS 547

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     F R+    +  +GR  R
Sbjct: 548 RGLDVNDITHVYNYD-----FPRNIEEYVHRVGRTGR 579


>gi|257457231|ref|ZP_05622406.1| primosomal protein N' [Treponema vincentii ATCC 35580]
 gi|257445382|gb|EEV20450.1| primosomal protein N' [Treponema vincentii ATCC 35580]
          Length = 690

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 16/106 (15%)

Query: 599 TEYLYER------NIRVRYMHSEV--KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TEY+ E+      +  V+ + ++V  K  + ++I+ D R G  D+L+G  ++ +GL+ P 
Sbjct: 449 TEYIEEQVRKTFPDCTVQRIDTDVLQKNKQAVQILHDFRSGAIDILLGTQMIAKGLNFPG 508

Query: 651 CGLVAILDADK-------EGFLRSKTSLIQTIGRAARNV-NSKVIL 688
             LV I  AD            R+ + ++Q  GRA R V + +VI+
Sbjct: 509 VRLVGIALADTGLQMPDFRAAERTFSLIMQVAGRAGRYVPDGEVII 554


>gi|156044530|ref|XP_001588821.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980]
 gi|154694757|gb|EDN94495.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1515

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            +LGK D+L+  N+L EG+D+  C LV      K   L+   S IQ  GR AR  +SK+I
Sbjct: 531 FKLGKIDILIATNVLEEGIDVRACNLVICF--SKPSNLK---SFIQRRGR-ARQQDSKLI 584

Query: 688 L 688
           L
Sbjct: 585 L 585


>gi|152990085|ref|YP_001355807.1| primosome assembly protein PriA [Nitratiruptor sp. SB155-2]
 gi|151421946|dbj|BAF69450.1| primosomal replication factor Y [Nitratiruptor sp. SB155-2]
          Length = 610

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 8/87 (9%)

Query: 610 RYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD-------ADK 661
           R+    V T  ++E +I++    K D+LVG  +L +G D P+  L  ++D       AD 
Sbjct: 406 RFDKDAVSTQRKLEKLIKEFAQKKIDILVGTQMLSKGHDYPDVALSVVMDIDYVLAMADY 465

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVIL 688
               R+ +  +Q  GRA R  ++ V++
Sbjct: 466 RARERAVSLFVQISGRAGRKESANVLV 492


>gi|157121045|ref|XP_001653747.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882993|gb|EAT47218.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 814

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 34/149 (22%)

Query: 87  SEKQTREISEQTMTPSVQALARLIQSD-NPLLKNGKIWTPHRSWSINNHSKDITFFQMQT 145
           SEK   E++E+          R+ + D N  +K GKI  P RSWS     K+I     + 
Sbjct: 353 SEKDCDEMTERDW--------RIFREDYNITIKGGKIPNPFRSWSETGFPKEILDIIDKV 404

Query: 146 DY-HPSGDQPAAIAQLLKGIHSREKVQLLLGV--TGSGKTFT--------------MAKV 188
            Y  P+  Q  AI     G+ +R+    ++G+  TGSGKT                + ++
Sbjct: 405 GYKEPTPIQRQAIPI---GLQNRD----IIGIAETGSGKTLAFLIPLLTWIQSLPKIDRL 457

Query: 189 IEAMQRP-AIVMAPNKILAAQLYSEFKNF 216
             A Q P AI++AP + LA Q+  E + F
Sbjct: 458 ETADQGPYAIILAPTRELAQQIEEETQKF 486


>gi|37748194|gb|AAH59237.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
          Length = 851

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  QG R ++   TK+ A++L++    +    + +H ++   +R   ++  R G F VLV
Sbjct: 507 SGHQG-RTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFRNGNFGVLV 564

Query: 638 GINLLREGLDIPECGLV 654
             N+   GLDIPE  LV
Sbjct: 565 ATNVAARGLDIPEVDLV 581


>gi|326802990|ref|YP_004320808.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651469|gb|AEA01652.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 508

 Score = 40.8 bits (94), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++++  L ER  +   +H ++   +R  I++D + G+ ++LV  ++   GLDI  
Sbjct: 248 TKRRVDEVSRGLIERGYQAEGIHGDLSQEKRSSIMKDFKDGRLEILVATDVAARGLDISN 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              V   D  ++       S +  IGR  R
Sbjct: 308 VTHVYNYDIPQD-----PESYVHRIGRTGR 332


>gi|312127908|ref|YP_003992782.1| primosomal protein n' [Caldicellulosiruptor hydrothermalis 108]
 gi|311777927|gb|ADQ07413.1| primosomal protein N' [Caldicellulosiruptor hydrothermalis 108]
          Length = 724

 Score = 40.8 bits (94), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 17/110 (15%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI--EIIRDLRLGKFDVLVGINLLREGLDI 648
           T+++ E++  Y   ++ RV  M S+  + +    +I++  R  + D+LVG  ++ +GL  
Sbjct: 488 TQKIEEEIKAYF--KDARVLRMDSDTTSRKDATEQIVKKFREKEADILVGTQMIAKGLHF 545

Query: 649 PECGLVAILDAD----------KEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           P+  LV ++DAD          +E   R+   L Q  GR+ R    KVI+
Sbjct: 546 PDLTLVGVIDADILLNMPDFRSRE---RTFQLLTQVAGRSGREKPGKVII 592


>gi|294463243|gb|ADE77157.1| unknown [Picea sitchensis]
          Length = 394

 Score = 40.8 bits (94), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           +  +   +H  +KT E+ + I+  + GK  +L+   ++  G+DIPE  ++ I++A++ G 
Sbjct: 221 KGYKCGLLHGRMKTTEKEKAIQQFKEGKTQILLSTQVVEVGIDIPEATMMVIMNAERFGI 280

Query: 665 LRSKTSLIQTIGRAARNVN-SKVILYADT 692
               + L Q  GR  R    S  IL + +
Sbjct: 281 ----SQLHQFRGRVGRGTGKSTCILVSSS 305


>gi|294944227|ref|XP_002784150.1| eukaryotic translation initiation factor 4A, putative [Perkinsus
           marinus ATCC 50983]
 gi|239897184|gb|EER15946.1| eukaryotic translation initiation factor 4A, putative [Perkinsus
           marinus ATCC 50983]
          Length = 389

 Score = 40.8 bits (94), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + L E ++E +  V  MH+++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 264 TRRKVDYLAEKMHEADHTVSCMHADLTQEERDLIMREFRSGSSRVLISTDLLARGIDVQQ 323

Query: 651 CGLV 654
             LV
Sbjct: 324 VSLV 327


>gi|228475036|ref|ZP_04059764.1| primosomal protein N' [Staphylococcus hominis SK119]
 gi|228271021|gb|EEK12409.1| primosomal protein N' [Staphylococcus hominis SK119]
          Length = 802

 Score = 40.8 bits (94), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +++ D   GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 594 KLLTDFENGKGDILLGTQMIAKGLDYPNITLVGVLNADTMLNLPDFRASERTYQLLTQVS 653

Query: 676 GRAARN 681
           GRA R+
Sbjct: 654 GRAGRH 659


>gi|218700384|ref|YP_002408013.1| transcription-repair coupling factor [Escherichia coli IAI39]
 gi|293409480|ref|ZP_06653056.1| transcription-repair coupling factor [Escherichia coli B354]
 gi|218370370|emb|CAR18173.1| transcription-repair coupling factor [Escherichia coli IAI39]
 gi|291469948|gb|EFF12432.1| transcription-repair coupling factor [Escherichia coli B354]
          Length = 1148

 Score = 40.8 bits (94), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|118097368|ref|XP_425202.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
           [Gallus gallus]
          Length = 617

 Score = 40.8 bits (94), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 430 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKDVLVATDVASK 489

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 490 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 538

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 539 VLMDLKALLLEAKQKVPP 556


>gi|281600530|gb|ADA73514.1| Transcription-repair coupling factor [Shigella flexneri 2002017]
          Length = 1169

 Score = 40.8 bits (94), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 37  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 96

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS----ATRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 97  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGILIVPVNTLMQR-----VCPHSFLH 145

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 146 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 196

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 197 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 251

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 252 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 294

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 295 SYFPANTLL 303



 Score = 37.4 bits (85), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 844 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 901

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 902 NTIIIERADHFGL----AQLHQLRGRVGRS 927


>gi|223590197|sp|A5DKW3|DRS1_PICGU RecName: Full=ATP-dependent RNA helicase DRS1
 gi|190347530|gb|EDK39816.2| hypothetical protein PGUG_03914 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 705

 Score = 40.8 bits (94), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 5/101 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           QQ  RI++ V  K MA  L   L    ++V  +H  +   +R++ ++D R     VL+  
Sbjct: 445 QQQNRIVVFVSRKEMAHRLRIVLGLLGMKVSELHGSLTQEQRLQSVKDFRSLAVPVLICT 504

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +L   GLDIP+  +V   D  K     +    +  +GR AR
Sbjct: 505 DLAARGLDIPKIEIVINFDMPK-----THEIYLHRVGRTAR 540


>gi|170058665|ref|XP_001865019.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167877695|gb|EDS41078.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 686

 Score = 40.8 bits (94), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           ++A+   + ++ V TKR  +D+T  +     R   +H +    ER  ++   R G+  +L
Sbjct: 358 ISAEAETKTIVFVETKRRVDDITRSICRNGWRAVSIHGDKSQQERDYVLNAFRNGRQGIL 417

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           V  ++   GLD+ +   V   D     +  +    +  IGR  R+ N+
Sbjct: 418 VATDVAARGLDVEDVKFVINYD-----YPSNSEDYVHRIGRTGRSNNT 460


>gi|41393175|ref|NP_958918.1| eukaryotic translation initiation factor 4A, isoform 1B [Danio
           rerio]
 gi|29612461|gb|AAH49427.1| Eukaryotic translation initiation factor 4A, isoform 1B [Danio
           rerio]
 gi|122890762|emb|CAM13210.1| eukaryotic translation initiation factor 4A isoform 1B [Danio
           rerio]
          Length = 406

 Score = 40.8 bits (94), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   +R  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSALHGDMDQKDRDLIMREFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|26368308|dbj|BAB26817.2| unnamed protein product [Mus musculus]
          Length = 832

 Score = 40.8 bits (94), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  QG R ++   TK+ A++L++    +    + +H ++   +R   ++  R G F VLV
Sbjct: 488 SGHQG-RTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFRNGNFGVLV 545

Query: 638 GINLLREGLDIPECGLV 654
             N+   GLDIPE  LV
Sbjct: 546 ATNVAARGLDIPEVDLV 562


>gi|80979095|gb|ABB54750.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 40.8 bits (94), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 15/115 (13%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      +++    +Q+ GR AR   +
Sbjct: 440 IQQFRDGNANLMICSSVLEEGIDVQACNHVFILDP-----VKTFNMYVQSKGR-ARTTEA 493

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           K +L+          A  E  +  ++  ++ K HN   + +K++++E  +P L E
Sbjct: 494 KFVLFT---------ADKEREKTIQQIYQYRKAHNDIAEYLKDRVLEKTEPELYE 539


>gi|297612409|ref|NP_001068490.2| Os11g0689400 [Oryza sativa Japonica Group]
 gi|77552592|gb|ABA95389.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
 gi|255680379|dbj|BAF28853.2| Os11g0689400 [Oryza sativa Japonica Group]
          Length = 1398

 Score = 40.8 bits (94), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 6/108 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I  A ++G ++++   TK+M + L   +  R+     +H +    ER  ++   R G+
Sbjct: 840 EQILRAQERGSKVIIFCSTKKMCDQLARDI-GRSFGAASIHGDKSQAERDNVLNQFRTGR 898

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +LV  ++   GLDI +  +V   D     F       +  IGR  R
Sbjct: 899 APILVATDVAARGLDIKDIRVVINYD-----FPTGIEDYVHRIGRTGR 941


>gi|74003482|ref|XP_860819.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 16 [Canis familiaris]
          Length = 312

 Score = 40.8 bits (94), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 187 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 246

Query: 651 CGLV 654
             LV
Sbjct: 247 VSLV 250


>gi|24378982|ref|NP_720937.1| putative late competence protein [Streptococcus mutans UA159]
 gi|24376872|gb|AAN58243.1|AE014895_8 putative late competence protein [Streptococcus mutans UA159]
          Length = 433

 Score = 40.8 bits (94), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T +R+E + + R G   +LV   +L  G+  P C  V ++ ++   +L +K+SL+Q  GR
Sbjct: 337 TTDRLEKVENFRKGNTQILVSTTILERGVTFP-CVDVFVMMSNH--YLFTKSSLVQIAGR 393

Query: 678 AARNV---NSKVILYADTITKSIQLAIDETTRRREK 710
             R+    + K++ + + + ++++ AI E     +K
Sbjct: 394 VGRSADRPDGKLLFFHNGMNRAMKKAIMEIKTMNKK 429


>gi|331682620|ref|ZP_08383239.1| transcription-repair coupling factor [Escherichia coli H299]
 gi|331080251|gb|EGI51430.1| transcription-repair coupling factor [Escherichia coli H299]
          Length = 1148

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|330846291|ref|XP_003294974.1| hypothetical protein DICPUDRAFT_85413 [Dictyostelium purpureum]
 gi|325074446|gb|EGC28501.1| hypothetical protein DICPUDRAFT_85413 [Dictyostelium purpureum]
          Length = 445

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 124/304 (40%), Gaps = 53/304 (17%)

Query: 464 YIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS------CMDNRPLRFEE 517
           Y+PE  L  V ++ V I     +     +RK ++      +         M+N P + ++
Sbjct: 153 YVPELDLPAVVKNQVIIGTPGKILTHILNRKLSIKHLKMVVMDEADFIVSMENVPTQIQQ 212

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------- 568
            + L P  I +     ++     QG  VE +I+   + +P V+IR  ++ +         
Sbjct: 213 IHRLLPKQIKICLFSATF----SQG--VENLIKNV-VPEPNVDIRLKKSDLGLQRIHQYF 265

Query: 569 -------------EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS- 614
                         D+Y  I++        ++ V T + A+ L E + E    V  ++  
Sbjct: 266 IDCGSESNKPFILSDLYGFISIGQS-----IVFVHTIQTAKTLYEKMKEDGHSVSILYGK 320

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR-SKTSLIQ 673
           ++ T  R E +++ R GK  VL+  N+L  G+DIP+  LV   D   +   R      + 
Sbjct: 321 DLSTEARFEHLKNFREGKSKVLISTNVLARGIDIPQVSLVVNYDIPLDENARPDPVHYLH 380

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            IGR  R   S V         +I    D++++ +   +  +  H+I   +  E  +E +
Sbjct: 381 RIGRVGRFGRSGV---------AITFVHDQSSKTKLNNIIEHLGHHIEEINASE--LEQL 429

Query: 734 DPIL 737
           D IL
Sbjct: 430 DGIL 433


>gi|312959638|ref|ZP_07774155.1| transcription-repair coupling factor [Pseudomonas fluorescens WH6]
 gi|311286355|gb|EFQ64919.1| transcription-repair coupling factor [Pseudomonas fluorescens WH6]
          Length = 1149

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 60/307 (19%), Positives = 118/307 (38%), Gaps = 55/307 (17%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   A +R  +++  +   A +L  E   F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +   +   
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELAHG----------VLVVPITTALHRLAPTKFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++  ++ + L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDVGQKLDVDQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMG-SKLPYRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P   + I  VE+IK+                       L  R   L+
Sbjct: 184 LFDDEIETLRTFDPENQRSIDKVESIKL-----------------------LPAREFPLQ 220

Query: 412 KEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           K+       R  +R   D       + L +  +   IE Y              TLF+Y+
Sbjct: 221 KDAVTRFKARFRERFDVDFRRCPIFQDLSSGITPAGIEYYLPLFFDET-----STLFDYL 275

Query: 466 PEDSLLF 472
           P+D+ +F
Sbjct: 276 PQDTQVF 282



 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 13/122 (10%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VL+   ++  G+D+P  
Sbjct: 825 EKCAADLAELVPE--ARIAIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 882

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
             + I  ADK G       L Q  GR  R+ +     YA  +T   Q    + T   EK+
Sbjct: 883 NTIIIERADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPPRQ----QITSDAEKR 931

Query: 712 LE 713
           LE
Sbjct: 932 LE 933


>gi|309810396|ref|ZP_07704230.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185]
 gi|308435636|gb|EFP59434.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185]
          Length = 537

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL I+ +  TKR A  +++ L  R      +H ++    R + +R  R GK DVLV
Sbjct: 282 AKDRGLTIIFS-RTKRTAAKVSDELISRGFAAAPLHGDLGQGAREQALRAFRSGKVDVLV 340

Query: 638 GINLLREGLDI 648
             ++   G+D+
Sbjct: 341 ATDVAARGIDV 351


>gi|294784709|ref|ZP_06749997.1| helicase [Fusobacterium sp. 3_1_27]
 gi|294486423|gb|EFG33785.1| helicase [Fusobacterium sp. 3_1_27]
          Length = 942

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 11/101 (10%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L  L+ V     A+ L E   E+ I+   + SE    ER E IR L  G+ + +V +++ 
Sbjct: 436 LSCLIFVSKVEEAKILVEKFLEQGIKAIALSSENSDNEREEAIRKLEQGEIEYIVSVDIF 495

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTS---LIQTIGRAAR 680
            EG+DIP C    IL       LR  TS    IQ +GR  R
Sbjct: 496 NEGVDIP-CVNQVIL-------LRPTTSAIVYIQQLGRGLR 528


>gi|169829741|ref|YP_001699899.1| ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus C3-41]
 gi|168994229|gb|ACA41769.1| Probable ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus
           C3-41]
          Length = 508

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 7/149 (4%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++SA  +  DV   +    Q  L I+    TKR  ++L + L  R      +H ++   +
Sbjct: 220 VKSAEREKFDVLSRLLNVHQPELAIIFG-RTKRRVDELAQALSIRGYLAEGIHGDLSQAK 278

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI ++R  +  K D+LV  ++   GLDI   G+  + + D     +   S +  IGR  R
Sbjct: 279 RISVLRQFKENKIDILVATDVAARGLDI--SGVTHVYNFD---IPQDPESYVHRIGRTGR 333

Query: 681 NVNSKVILYADTITKSIQLAI-DETTRRR 708
              S + +   T  +   L I +ETT++R
Sbjct: 334 AGKSGLAVTFVTPREMGYLRIVEETTKKR 362


>gi|126651493|ref|ZP_01723697.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
 gi|126591746|gb|EAZ85842.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
          Length = 513

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 7/149 (4%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++SA  +  DV   +    Q  L I+    TKR  ++L + L  R      +H ++   +
Sbjct: 220 VKSAEREKFDVLSRLLNVHQPELAIIFG-RTKRRVDELAQALSIRGYLAEGIHGDLSQAK 278

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI ++R  +  K D+LV  ++   GLDI   G+  + + D     +   S +  IGR  R
Sbjct: 279 RISVLRQFKENKIDILVATDVAARGLDI--SGVTHVYNFD---IPQDPESYVHRIGRTGR 333

Query: 681 NVNSKVILYADTITKSIQLAI-DETTRRR 708
              S + +   T  +   L I +ETT++R
Sbjct: 334 AGKSGLAVTFVTPREMGYLRIVEETTKKR 362


>gi|124485198|ref|YP_001029814.1| hypothetical protein Mlab_0371 [Methanocorpusculum labreanum Z]
 gi|124362739|gb|ABN06547.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
           Z]
          Length = 656

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+   TKR  +DL   +  R   V  +H ++K  +R  ++   R G  DVL+  ++   G
Sbjct: 248 LVFCNTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDVLIATDVAARG 307

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +D+ +  +V   D  ++         +  IGR AR
Sbjct: 308 IDVDDVDIVFNYDVPQD-----VEYYVHRIGRTAR 337


>gi|80979099|gb|ABB54752.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 15/115 (13%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      +++    +Q+ GR AR   +
Sbjct: 440 IQQFRDGNANLMICSSVLEEGIDVQACNHVFILDP-----VKTFNMYVQSKGR-ARTTEA 493

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           K +L+          A  E  +  ++  ++ K HN   + +K++++E  +P L E
Sbjct: 494 KFVLFT---------ADKEREKTIQQIYQYRKAHNDIAEYLKDRVLEKTEPELYE 539


>gi|81295381|ref|NP_001032278.1| nucleolar RNA helicase 2 [Rattus norvegicus]
 gi|123780397|sp|Q3B8Q1|DDX21_RAT RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
           protein 21; AltName: Full=Gu-alpha; AltName:
           Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
           RNA helicase II; AltName: Full=RH II/Gu
 gi|77748254|gb|AAI05879.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Rattus norvegicus]
 gi|149038676|gb|EDL92965.1| rCG22008, isoform CRA_b [Rattus norvegicus]
          Length = 782

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  QG R ++   TK+ A++L++    +    + +H ++   +R   ++  R G F VLV
Sbjct: 431 SGHQG-RTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFRNGNFGVLV 488

Query: 638 GINLLREGLDIPECGLV 654
             N+   GLDIPE  LV
Sbjct: 489 ATNVAARGLDIPEVDLV 505


>gi|56785882|gb|AAW29073.1| DEAD box helicase Vasa1 [Nematostella vectensis]
          Length = 279

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L+A    R L+ V  KR+A+ L  +L + N     + S+    ER   +RD R G+ ++L
Sbjct: 191 LSATGTDRTLVFVELKRVADFLAAWLSQNNFPTTSISSDRCQSEREAALRDFRDGRANIL 250

Query: 637 VGINLLREGLDIP 649
           V  ++   GLDIP
Sbjct: 251 VATSVAARGLDIP 263


>gi|21674393|ref|NP_662458.1| ATP-dependent DNA helicase RecG [Chlorobium tepidum TLS]
 gi|21647574|gb|AAM72800.1| ATP-dependent DNA helicase RecG [Chlorobium tepidum TLS]
          Length = 704

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           +R+  +H ++   E+  ++ + R G+ D+LVG  ++  G+D+P   ++ I  A++ G   
Sbjct: 521 LRLGLIHGQLPAAEKEAVMAEFRSGRLDILVGTTVIEVGVDVPNATIMVIEHAERFGI-- 578

Query: 667 SKTSLIQTIGRAARN 681
             + L Q  GR  R 
Sbjct: 579 --SQLHQLRGRVGRG 591


>gi|22026807|ref|NP_523778.2| Dicer-2 [Drosophila melanogaster]
 gi|21627058|gb|AAF57830.2| Dicer-2 [Drosophila melanogaster]
          Length = 1722

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 15/115 (13%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      +++    +Q+ GR AR   +
Sbjct: 447 IQQFRDGNANLMICSSVLEEGIDVQACNHVFILDP-----VKTFNMYVQSKGR-ARTTEA 500

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           K +L+          A  E  +  ++  ++ K HN   + +K++++E  +P L E
Sbjct: 501 KFVLFT---------ADKEREKTIQQIYQYRKAHNDIAEYLKDRVLEKTEPELYE 546


>gi|16215719|dbj|BAB69959.1| double-strand-specific ribonuclease [Drosophila melanogaster]
          Length = 1722

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 15/115 (13%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      +++    +Q+ GR AR   +
Sbjct: 447 IQQFRDGNANLMICSSVLEEGIDVQACNHVFILDP-----VKTFNMYVQSKGR-ARTTEA 500

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           K +L+          A  E  +  ++  ++ K HN   + +K++++E  +P L E
Sbjct: 501 KFVLFT---------ADKEREKTIQQIYQYRKAHNDIAEYLKDRVLEKTEPELYE 546


>gi|332304872|ref|YP_004432723.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172201|gb|AEE21455.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 576

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 8/125 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK    +L+E L  R   V  ++ ++    R   +  L+ GK D+LV  +++  
Sbjct: 249 VIIFVRTKTATMELSEKLSARGYAVEPLNGDIPQNSRERTVERLKRGKIDILVATDVVAR 308

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  ++  IL+     K +  +I+
Sbjct: 309 GLDVERVSHVINYDVPYDTESYVHR----IGRTGRAGRQGDA--ILFISHREKRMLFSIE 362

Query: 703 ETTRR 707
             TR+
Sbjct: 363 RATRQ 367


>gi|316969067|gb|EFV53229.1| ATP-dependent RNA helicase vasa [Trichinella spiralis]
          Length = 287

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+ V  KRMA+ ++  L     +   +H + +  ER + +R+ + GK +VLV  ++  
Sbjct: 116 KILIFVSRKRMADIVSMELLNNGFKSTSIHGDREQYEREKALRNFKQGKANVLVATDVAA 175

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDI     V   D  K          +  IGR  R  N
Sbjct: 176 RGLDIAGVDYVINFDMPK-----CVDDYVHRIGRTGRVGN 210


>gi|302865853|ref|YP_003834490.1| ATP-dependent DNA helicase RecG [Micromonospora aurantiaca ATCC
           27029]
 gi|302568712|gb|ADL44914.1| ATP-dependent DNA helicase RecG [Micromonospora aurantiaca ATCC
           27029]
          Length = 733

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  +   E+  ++R    G+ DVLV   ++  G+++P   ++ +LDAD+ G  
Sbjct: 549 GLRIGVLHGRLPADEKDAVMRAYADGELDVLVATTVVEVGVNVPNATVMIVLDADRFGV- 607

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R   + + L
Sbjct: 608 ---SQLHQLRGRVGRGSAAGLCL 627


>gi|300767251|ref|ZP_07077163.1| DNA replication factor Y [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180465|ref|YP_003924593.1| DNA replication factor Y [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|300495070|gb|EFK30226.1| DNA replication factor Y [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308045956|gb|ADN98499.1| DNA replication factor Y [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+++ E+L + L + NI      +  K     +++     G+ D+L+G  ++ +GLD P 
Sbjct: 566 TEKVEEELQDLLPDANIIRMDNDTTRKKGAHAKLLAQFGSGEADILIGTQMIAKGLDFPN 625

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
             LV +L+AD    L       R+   L Q  GRA R
Sbjct: 626 VTLVGVLNADTALGLPDFRASERTFQLLTQVSGRAGR 662


>gi|222624792|gb|EEE58924.1| hypothetical protein OsJ_10575 [Oryza sativa Japonica Group]
          Length = 696

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   +++   L +R  R+  +H +     R+E ++  + G + VLV  ++   
Sbjct: 393 VLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVATDVAAR 452

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           GLDI     V   D  KE  +      I  IGR  R  +     Y     K ++ A
Sbjct: 453 GLDIKSIKTVVNFDIAKEMDMH-----IHRIGRTGRAGDKDGTAYTLITQKEVRFA 503


>gi|238505736|ref|XP_002384077.1| DEAD/DEAH box RNA helicase, putative [Aspergillus flavus NRRL3357]
 gi|220690191|gb|EED46541.1| DEAD/DEAH box RNA helicase, putative [Aspergillus flavus NRRL3357]
          Length = 604

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 1/107 (0%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A    R L+ V +K  A+ L +YLY   +    +HS+    ER + +R  R  K  +L
Sbjct: 407 LLAMPPSRTLIFVNSKAQADLLDDYLYNMGLPSTSIHSDRTQREREDALRAFRTAKCPIL 466

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           V   +   GLDI     V   D  ++         +  IGR AR  N
Sbjct: 467 VATGVSARGLDIKNVMHVVNYDLPRQSH-GGIVEYVHRIGRTARIGN 512


>gi|189501939|ref|YP_001957656.1| hypothetical protein Aasi_0524 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497380|gb|ACE05927.1| hypothetical protein Aasi_0524 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 832

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +II +L  G+ D+LVG  ++ +GLD  +  LV +LD D+  +        R    + Q  
Sbjct: 623 QIIDNLESGQTDILVGTQMITKGLDFGQVSLVGVLDVDRLLYFPDFRANERCFQLITQVS 682

Query: 676 GRAAR 680
           GRA R
Sbjct: 683 GRAGR 687


>gi|126274019|ref|XP_001387376.1| Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Scheffersomyces
           stipitis CBS 6054]
 gi|146324945|sp|A3GFI4|IF4A_PICST RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|126213246|gb|EAZ63353.1| Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Pichia stipitis
           CBS 6054]
          Length = 397

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD I++      + ++   T+   E LT  L   N  V  +H+++   ER  I+++ R
Sbjct: 255 DLYDSISVT-----QAVIFCNTRSKVEFLTTKLKAENFTVSAIHADLPQAERDTIMKEFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   +L+  +LL  G+D+ +  LV   D  ++KE ++
Sbjct: 310 SGSSRILIATDLLARGIDVQQVSLVINYDLPSNKENYI 347


>gi|80979085|gb|ABB54745.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 15/115 (13%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      +++    +Q+ GR AR   +
Sbjct: 440 IQQFRDGNANLMICSSVLEEGIDVQACNHVFILDP-----VKTFNMYVQSKGR-ARTTEA 493

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           K +L+          A  E  +  ++  ++ K HN   + +K++++E  +P L E
Sbjct: 494 KFVLFT---------ADKEREKTIQQIYQYRKAHNDIAEYLKDRVLEKTEPELYE 539


>gi|55379328|ref|YP_137178.1| Hef nuclease [Haloarcula marismortui ATCC 43049]
 gi|55232053|gb|AAV47472.1| ATP-dependent RNA helicase homolog eIF-4A [Haloarcula marismortui
           ATCC 43049]
          Length = 852

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 12/119 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-HSEVKTLERI------EIIRDLR 629
           L  + G R+++   ++  AE L ++L +     +++  S+    E +      E +   R
Sbjct: 367 LGIENGERVIVFTESRDTAETLVDFLSDHFTTQKFVGQSDTDGSEGMTQTQQQETLDRFR 426

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+F+VLV  ++  EGLD+PE  LV   +      + +    IQ  GR  R    +V++
Sbjct: 427 NGEFEVLVSTSVAEEGLDVPEVDLVLFYEP-----VPTAIRAIQRKGRTGRQAEGRVVV 480


>gi|72384374|ref|NP_062426.2| nucleolar RNA helicase 2 [Mus musculus]
 gi|74213643|dbj|BAE35625.1| unnamed protein product [Mus musculus]
 gi|112180476|gb|AAH43655.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
 gi|148700139|gb|EDL32086.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Mus
           musculus]
          Length = 851

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  QG R ++   TK+ A++L++    +    + +H ++   +R   ++  R G F VLV
Sbjct: 507 SGHQG-RTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFRNGNFGVLV 564

Query: 638 GINLLREGLDIPECGLV 654
             N+   GLDIPE  LV
Sbjct: 565 ATNVAARGLDIPEVDLV 581


>gi|19113180|ref|NP_596388.1| ATP-dependent RNA helicase Dbp3 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|1723271|sp|Q10202|DBP3_SCHPO RecName: Full=ATP-dependent RNA helicase dbp3
 gi|3451298|emb|CAA20430.1| ATP-dependent RNA helicase Dbp3 (predicted) [Schizosaccharomyces
           pombe]
          Length = 578

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 9/127 (7%)

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
           V  T GS EL   Q I   QI+    ++D P   RS    ++++  +   +  +  +IL+
Sbjct: 371 VKITIGSDELAASQNI--TQIVE---ILDDP---RSKERMLDNLLRKHLSSGGKDDKILI 422

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
            VL K+ A  + E    R   V  +H ++    R++ + D + GK  VLV  ++   GLD
Sbjct: 423 FVLYKKEAARV-EGTLARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLD 481

Query: 648 IPECGLV 654
           IP+  LV
Sbjct: 482 IPKVQLV 488


>gi|13959325|sp|Q9JIK5|DDX21_MOUSE RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
           protein 21; AltName: Full=Gu-alpha; AltName:
           Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
           RNA helicase II; AltName: Full=RH II/Gu
 gi|16975510|gb|AAD43959.3|AF159131_1 nucleolar RNA helicase II/Gu [Mus musculus]
          Length = 851

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  QG R ++   TK+ A++L++    +    + +H ++   +R   ++  R G F VLV
Sbjct: 507 SGHQG-RTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFRNGNFGVLV 564

Query: 638 GINLLREGLDIPECGLV 654
             N+   GLDIPE  LV
Sbjct: 565 ATNVAARGLDIPEVDLV 581


>gi|66363286|ref|XP_628609.1| abstrakt protein SF II helicase + Znknuckle C2HC (PA)
           [Cryptosporidium parvum Iowa II]
 gi|46229614|gb|EAK90432.1| abstrakt protein SF II helicase + Znknuckle C2HC (PA)
           [Cryptosporidium parvum Iowa II]
          Length = 570

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+    K+  +++ EYL  + +    +H  +   +R   I   R G+ DVLVG ++  
Sbjct: 376 RVLIFSENKKDVDEIHEYLLLKGVNAVAIHGGLTQEQRFRSIEKFRNGEMDVLVGTDVAS 435

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           +GLD      V   D  KE       + +  IGR  R 
Sbjct: 436 KGLDFENIQHVINFDMPKE-----IENYVHRIGRTGRG 468


>gi|329898744|ref|ZP_08272452.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088]
 gi|328920765|gb|EGG28222.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088]
          Length = 412

 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 2/111 (1%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           +++L+   TK  A  L   L + NIR   +H      +R + + D + GK  VLV  ++ 
Sbjct: 243 VQVLVFSRTKHGANKLVRELDKANIRAAAIHGNRSQSQRTKALADFKSGKIAVLVATDIA 302

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
             G+DI +  L  +++ D           I   GRA  N  +  ++ AD +
Sbjct: 303 SRGIDIAQ--LPVVINFDLPNVPEDYVHRIGRTGRAGSNGRAISLVCADEV 351


>gi|320334953|ref|YP_004171664.1| transcription factor CarD [Deinococcus maricopensis DSM 21211]
 gi|319756242|gb|ADV67999.1| transcription factor CarD [Deinococcus maricopensis DSM 21211]
          Length = 1042

 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 9/102 (8%)

Query: 593 RMAEDLTEYLYERNI----RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           R+A      LY R +    RV   H ++   E  EI+     G FDVL+   ++  GLDI
Sbjct: 725 RVASIGARSLYLRTLVPEARVGVAHGQMNEEELEEIMLGFEEGAFDVLLATTIVETGLDI 784

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAA-RNVNSKVILY 689
           PE   + I  +D+ G       L Q  GR   R+V++   L+
Sbjct: 785 PEANTILIERSDRLGL----AQLYQLRGRVGRRSVDAYAYLF 822


>gi|302345341|ref|YP_003813694.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149991|gb|ADK96253.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 573

 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   +K+  + +   L   +I    MHS++   +R +++   + G+ DVLV  +++ 
Sbjct: 247 RVIIFSGSKQKVKQIAGSLNRMHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVS 306

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691
            G+DI +  +V   D   D E +       +  IGR AR + + K I + +
Sbjct: 307 RGIDIDDIAMVINYDVPHDAEDY-------VHRIGRTARADRDGKAITFVN 350


>gi|299821767|ref|ZP_07053655.1| DNA helicase RecG [Listeria grayi DSM 20601]
 gi|299817432|gb|EFI84668.1| DNA helicase RecG [Listeria grayi DSM 20601]
          Length = 682

 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  MH ++   E+ +I+RD      D LV   ++  G+++P   ++ I DAD+ G    
Sbjct: 503 KVGLMHGKLLPAEKEDIMRDFNENNLDCLVSTTVVEVGVNVPNATMMVIYDADRFGL--- 559

Query: 668 KTSLIQTIGRAARNV-NSKVILYADTITK 695
              L Q  GR  R    S  IL A+  T+
Sbjct: 560 -AQLHQLRGRVGRGSEQSYCILIANPKTE 587


>gi|222032867|emb|CAP75606.1| Transcription-repair-coupling factor [Escherichia coli LF82]
 gi|312945676|gb|ADR26503.1| transcription-repair coupling factor [Escherichia coli O83:H1 str.
           NRG 857C]
          Length = 1148

 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 231 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|222529030|ref|YP_002572912.1| primosomal protein N' [Caldicellulosiruptor bescii DSM 6725]
 gi|222455877|gb|ACM60139.1| primosomal protein N' [Caldicellulosiruptor bescii DSM 6725]
          Length = 724

 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 17/110 (15%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI--EIIRDLRLGKFDVLVGINLLREGLDI 648
           T+++ E++  Y   ++ RV  M S+  + +    +I++  R  + D+LVG  ++ +GL  
Sbjct: 488 TQKIEEEIKAYF--KDARVLRMDSDTTSKKDATEQIVKKFREKEADILVGTQMIAKGLHF 545

Query: 649 PECGLVAILDAD----------KEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           P+  LV ++DAD          +E   R+   L Q  GR+ R    KVI+
Sbjct: 546 PDLTLVGVIDADILLNMPDFRSRE---RTFQLLTQVAGRSGREKPGKVII 592


>gi|187931154|ref|YP_001891138.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712063|gb|ACD30360.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 679

 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 8/107 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            K + ++L E L + N+ + Y    +K+ ++IE +   +  K+ VLV   ++  G+D+P 
Sbjct: 490 VKTLYQELLEALGKENVGLVY--GSMKSKDKIEQMAAFKAKKYAVLVATTVIEVGVDVPN 547

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
             ++ I +A++ G     + L Q  GR  R       ++LY+D I++
Sbjct: 548 ATIMIIDNAERLGI----SQLHQLRGRVGRGAKESYCILLYSDKISE 590


>gi|153870816|ref|ZP_02000135.1| truncated transcription-repair coupling factor [Beggiatoa sp. PS]
 gi|152072718|gb|EDN69865.1| truncated transcription-repair coupling factor [Beggiatoa sp. PS]
          Length = 668

 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           ++A+++ E + E   RVR  H +++  E  ++++D    +F+VLV   ++  G+D+P   
Sbjct: 348 KIADEVQELVPEA--RVRIAHGKMRERELEQVMQDFYHRRFNVLVCTTIIETGIDVPTAN 405

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYADTITKSIQLAID 702
            + I  ADK G       L Q  GR  R+ +      +I +   +TK  Q  ID
Sbjct: 406 TMIINRADKLGL----AQLYQLRGRVGRSHHRAYAYLLIPHPKAMTKDAQKRID 455


>gi|149920097|ref|ZP_01908570.1| hypothetical protein PPSIR1_33219 [Plesiocystis pacifica SIR-1]
 gi|149819040|gb|EDM78477.1| hypothetical protein PPSIR1_33219 [Plesiocystis pacifica SIR-1]
          Length = 561

 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 111/298 (37%), Gaps = 64/298 (21%)

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           R +E +R EQR +   +++  +      E   R L GR  G              L+  D
Sbjct: 78  RRVEIERGEQRASSSAKVIVASIRSLHAERIGRVLAGRQIG--------------LVIYD 123

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM----------DNRPLR--FEEWNCLR 522
           E H  + +       +    A +  +G R P  +          D R L   F+E    R
Sbjct: 124 ECHHAVAE------SNREVLARIGVFGERWPGTLVGFTATTRRADGRALGEVFQEIVTER 177

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV--------EIRSARTQVEDVYDE 574
             + +++A      L   +G+ +E  +    L D PV        E+ +     E + + 
Sbjct: 178 SLSDMIAAG----YLRPLEGLRIETKV---SLEDVPVLGGTSFGAELDAGDFDPEALEEA 230

Query: 575 INLAAQQGL------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           +N+ A+  L            R +   +  R AE L+  L    +R   +H E+    R 
Sbjct: 231 VNVEARNQLVARSIMELCRDRRTIAFCVGVRHAEHLSAALNRLGVRAAIVHGEMPKPARE 290

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +   R G F VL  + +L EG D P    +A++        RS+   +Q +GR  R
Sbjct: 291 RALSRFRAGDFRVLTNVGVLTEGFDDPGVSAIAMVRPT-----RSEALYLQCVGRGMR 343


>gi|78776607|ref|YP_392922.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78497147|gb|ABB43687.1| ATP-dependent DNA helicase RecG [Sulfurimonas denitrificans DSM
           1251]
          Length = 604

 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           A   KG+ +R   ++++G  GSGKT   +A  +      +I+MAP  ILA Q+Y E K +
Sbjct: 238 ADFQKGLSAR---RMIVGDVGSGKTMVILASALMNSPNRSILMAPTTILANQIYEEAKKY 294

Query: 217 FP 218
            P
Sbjct: 295 LP 296


>gi|7385089|gb|AAF61690.1|AF220365_1 nucleolar RNA helicase II/Gu [Mus musculus]
 gi|148700138|gb|EDL32085.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_a [Mus
           musculus]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  QG R ++   TK+ A++L++    +    + +H ++   +R   ++  R G F VLV
Sbjct: 461 SGHQG-RTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFRNGNFGVLV 518

Query: 638 GINLLREGLDIPECGLV 654
             N+   GLDIPE  LV
Sbjct: 519 ATNVAARGLDIPEVDLV 535


>gi|80979087|gb|ABB54746.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 15/115 (13%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      +++    +Q+ GR AR   +
Sbjct: 440 IQQFRDGNANLMICSSVLEEGIDVQACNHVFILDP-----VKTFNMYVQSKGR-ARTTEA 493

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           K +L+          A  E  +  ++  ++ K HN   + +K++++E  +P L E
Sbjct: 494 KFVLFT---------ADKEREKTIQQIYQYRKAHNDIAEYLKDRVLEKTEPELYE 539


>gi|32266655|ref|NP_860687.1| ATP-dependent DNA helicase RecG [Helicobacter hepaticus ATCC 51449]
 gi|32262706|gb|AAP77753.1| ATP-dependent DNA recombinase RecG [Helicobacter hepaticus ATCC
           51449]
          Length = 628

 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFT-MAKVIEAM 192
           + DIT F     +  +  Q +AI  +   + S+   + L++G  G GKT   +  V+   
Sbjct: 229 NNDITPFIESLPFSLTSGQCSAIKDISLDLDSKIAARRLIMGDVGCGKTIVILCAVMMTY 288

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFP 218
              +I+MAP  ILA QLY E K   P
Sbjct: 289 PHTSILMAPTTILATQLYEEAKRLLP 314


>gi|74211590|dbj|BAE26522.1| unnamed protein product [Mus musculus]
          Length = 851

 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  QG R ++   TK+ A++L++    +    + +H ++   +R   ++  R G F VLV
Sbjct: 507 SGHQG-RTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFRNGNFGVLV 564

Query: 638 GINLLREGLDIPECGLV 654
             N+   GLDIPE  LV
Sbjct: 565 ATNVAARGLDIPEVDLV 581


>gi|1169228|sp|P46942|DB10_NICSY RecName: Full=ATP-dependent RNA helicase-like protein DB10
 gi|563986|dbj|BAA03763.1| RNA helicase like protein DB10 [Nicotiana sylvestris]
          Length = 607

 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 6/108 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I  + + G +I++   TK+M + L+  L  RN     +H +    ER  ++   R G+
Sbjct: 381 EQILRSKEPGSKIIIFCSTKKMCDQLSRNL-TRNFGAAAIHGDKSQGERDYVLSQFRAGR 439

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             VLV  ++   GLDI +  +V   D     F       +  IGR  R
Sbjct: 440 SPVLVATDVAARGLDIKDIRVVINYD-----FPTGIEDYVHRIGRTGR 482


>gi|326387000|ref|ZP_08208610.1| primosome assembly protein PriA [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326208181|gb|EGD58988.1| primosome assembly protein PriA [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 721

 Score = 40.8 bits (94), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 7/98 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            +R+A+++ E L +  + V    +     +  E +     G  DV+VG  L+ +G   PE
Sbjct: 486 VERIADEMAEILPDARVAVVTSDTLTSPAKAAEFVDLATHGGIDVIVGTQLVTKGFHFPE 545

Query: 651 CGLVAILDAD---KEGFLRSK----TSLIQTIGRAARN 681
             LV ++DAD   + G LR+       + Q  GRA R 
Sbjct: 546 LTLVGVVDADMGLEGGDLRAAERTYQQIAQVAGRAGRG 583


>gi|315172964|gb|EFU16981.1| primosomal protein [Enterococcus faecalis TX1346]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|302308420|ref|NP_985329.2| AFL221Cp [Ashbya gossypii ATCC 10895]
 gi|299790624|gb|AAS53153.2| AFL221Cp [Ashbya gossypii ATCC 10895]
          Length = 557

 Score = 40.8 bits (94), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I++   TKR  +++T YL +       +H + +  ER  ++ + R G+  ++V  ++  
Sbjct: 363 KIIIFASTKRTCDEITSYLRQDGWPALAIHGDKQQQERDWVLNEFRTGRSPIMVATDVAA 422

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            G+D+   G+  +++ D  G +      I   GRA 
Sbjct: 423 RGIDVK--GINFVINYDMPGNIEDYVHRIGRTGRAG 456


>gi|290993372|ref|XP_002679307.1| dicer helicase [Naegleria gruberi]
 gi|284092923|gb|EFC46563.1| dicer helicase [Naegleria gruberi]
          Length = 857

 Score = 40.8 bits (94), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 9/89 (10%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DL +YL    + +    S + + ++  I+ + R G  + L+  ++  EGLD+P C LV  
Sbjct: 454 DLKDYL---KVDILLGKSGMTSNQQNTILDNFRQGIVNTLISTSVAEEGLDVPACSLVIR 510

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           LD      + +  ++IQ+ GR AR+ NS+
Sbjct: 511 LDG-----IETTKTMIQSRGR-ARSANSE 533


>gi|257088236|ref|ZP_05582597.1| primosomal protein n [Enterococcus faecalis D6]
 gi|256996266|gb|EEU83568.1| primosomal protein n [Enterococcus faecalis D6]
 gi|315026428|gb|EFT38360.1| primosomal protein [Enterococcus faecalis TX2137]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|256846170|ref|ZP_05551628.1| DNA/RNA helicase [Fusobacterium sp. 3_1_36A2]
 gi|256719729|gb|EEU33284.1| DNA/RNA helicase [Fusobacterium sp. 3_1_36A2]
          Length = 942

 Score = 40.8 bits (94), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 11/101 (10%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L  L+ V     A+ L E   E+ I+   + SE    ER E IR L  G+ + +V +++ 
Sbjct: 436 LSCLIFVSKVEEAKILVEKFLEQGIKAIALSSENSDNEREEAIRKLEQGEIEYIVSVDIF 495

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTS---LIQTIGRAAR 680
            EG+DIP C    IL       LR  TS    IQ +GR  R
Sbjct: 496 NEGVDIP-CVNQVIL-------LRPTTSAIVYIQQLGRGLR 528


>gi|254556522|ref|YP_003062939.1| primosomal protein N' [Lactobacillus plantarum JDM1]
 gi|254045449|gb|ACT62242.1| primosomal protein N' [Lactobacillus plantarum JDM1]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+++ E+L + L + NI      +  K     +++     G+ D+L+G  ++ +GLD P 
Sbjct: 566 TEKVEEELQDLLPDANIIRMDNDTTRKKGAHAKLLAQFGSGEADILIGTQMIAKGLDFPN 625

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
             LV +L+AD    L       R+   L Q  GRA R
Sbjct: 626 VTLVGVLNADTALGLPDFRASERTFQLLTQVSGRAGR 662


>gi|297581209|ref|ZP_06943133.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
 gi|297534525|gb|EFH73362.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
          Length = 974

 Score = 40.8 bits (94), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 68/143 (47%), Gaps = 12/143 (8%)

Query: 541 QGIIVEQIIRPTGLVDPPV---EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           Q +  ++I    G  DP     ++ ++R + E VY E    A++  R L   ++K+ A+ 
Sbjct: 406 QAVNYQEIPWRNGKFDPNTLDNKLATSR-RAEHVYREWQ--AKKQTRTLAFCVSKKHADF 462

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           + +Y   + I    ++S+   + R + ++ L  GK +++  ++L  EG D+P    + + 
Sbjct: 463 MAQYFVAKGIHAIAVYSD-SAVRRNQALQWLDQGKIEIIFSVDLFNEGTDLPSIDTILMA 521

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
              +     SK   +Q +GR  R
Sbjct: 522 RPTE-----SKILFLQQLGRGLR 539


>gi|80979089|gb|ABB54747.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 40.8 bits (94), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 15/115 (13%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      +++    +Q+ GR AR   +
Sbjct: 440 IQQFRDGNANLMICSSVLEEGIDVQACNHVFILDP-----VKTFNMYVQSKGR-ARTTEA 493

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           K +L+          A  E  +  ++  ++ K HN   + +K++++E  +P L E
Sbjct: 494 KFVLFT---------ADKEREKTIQQIYQYRKAHNDIAEYLKDRVLEKTEPELYE 539


>gi|80979091|gb|ABB54748.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 40.8 bits (94), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 15/115 (13%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      +++    +Q+ GR AR   +
Sbjct: 440 IQQFRDGNANLMICSSVLEEGIDVQACNHVFILDP-----VKTFNMYVQSKGR-ARTTEA 493

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           K +L+          A  E  +  ++  ++ K HN   + +K++++E  +P L E
Sbjct: 494 KFVLFT---------ADKEREKTIQQIYQYRKAHNDIAEYLKDRVLEKTEPELYE 539


>gi|55821999|ref|YP_140440.1| transcription repair coupling factor [Streptococcus thermophilus
           CNRZ1066]
 gi|55737984|gb|AAV61625.1| transcription repair coupling factor [Streptococcus thermophilus
           CNRZ1066]
          Length = 1168

 Score = 40.8 bits (94), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 67/350 (19%), Positives = 139/350 (39%), Gaps = 48/350 (13%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF----- 225
           QL++G +GS K   MA  +        ++   +  A QL  +       + V  F     
Sbjct: 28  QLVMGFSGSSKAVAMASALSNQVPKIFIVTSTQNEAEQLVGDLSAILGEDKVYSFFADDV 87

Query: 226 -VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
             + + +  PE    +T + +E   S+N  +D           E +  +V S V     +
Sbjct: 88  SAAEFIFASPE----KTHSRLE---SLNFLMDE----------EASGVLVTSLVGTKLHL 130

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
            +   Y    + L +G   +   L   L    Y+R +  +  G F   GD ++I+    E
Sbjct: 131 PNPRVYKDSRIDLVLGKEYDLDALSRHLTHIGYQRVEQVLSPGEFSRRGDILDIYELTAE 190

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            + +R+  FG++I+ I +F   + + + N++ + I      +  R     A K ++  + 
Sbjct: 191 -LPYRLEFFGDEIDGIRQFDSDSQKSLNNLDHVVISPADDIILTREDYQRAEKALESAVS 249

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   +G  L    LE       E+L  T      ++  ++L+     +   TLF+Y
Sbjct: 250 ------RSDG--LHKAYLE-------EVLSVTIDGHRHKDLRKFLSLFY--DKAYTLFDY 292

Query: 465 IPEDSLLFVDESHVTIP-------QISGMYRGDFHRKATLAEYGFRLPSC 507
           +P+ + +F+D+    +        +++ +   D H+  +L+   + + S 
Sbjct: 293 LPKGTPVFIDDFQKIVDRHGRLELEVANLLTEDLHQGKSLSHLNYFVDSF 342



 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+ ++H ++  +     + D   G +D+LV   ++  G+DIP    + I +AD  G    
Sbjct: 850 RIGFVHGQMSEVMLENTLLDFLNGDYDILVATTIIETGIDIPNVNTLLIENADHMGL--- 906

Query: 668 KTSLIQTIGRAARNVNSKVILYA 690
            ++L Q  GR  R   S  I YA
Sbjct: 907 -STLYQLRGRVGR---SNRIAYA 925


>gi|191173073|ref|ZP_03034606.1| transcription-repair coupling factor [Escherichia coli F11]
 gi|190906618|gb|EDV66224.1| transcription-repair coupling factor [Escherichia coli F11]
          Length = 1148

 Score = 40.8 bits (94), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|331005597|ref|ZP_08328968.1| putative helicase [gamma proteobacterium IMCC1989]
 gi|330420612|gb|EGG94907.1| putative helicase [gamma proteobacterium IMCC1989]
          Length = 594

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I+++ L  +    +TE    R +R  Y+HS+  +     I+  L   + DV+V + +L 
Sbjct: 288 KIIVSALNYKHCIQITEAYSARGLRAEYIHSQEDSRINQNILDKLERHELDVIVQVRMLG 347

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           EG D P   + A+          + +   Q +GR  R V+
Sbjct: 348 EGFDHPFLSVAAVC-----SIFSNLSPFAQFVGRVMRVVD 382


>gi|322711331|gb|EFZ02905.1| ATP-dependent RNA helicase dbp-2 [Metarhizium anisopliae ARSEF 23]
          Length = 545

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+ V TKR+A+D+T +L +       +H + +  ER  ++   + GK  ++V  ++  
Sbjct: 385 KILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVAS 444

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+    +  +L+ D   +  +    I  IGR  R
Sbjct: 445 RGIDVRN--ITHVLNYD---YPNNSEDYIHRIGRTGR 476


>gi|319745647|gb|EFV97947.1| DNA helicase RecG [Streptococcus agalactiae ATCC 13813]
          Length = 671

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L+ Y +E   +V  +H  +K  E+  I++D +  K  +LV   ++  G+++P   ++ I
Sbjct: 487 ELSTY-FEGIAKVALVHGRMKNDEKDAIMQDFKDKKSHILVSTTVIEVGVNVPNATIMII 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           +DAD+ G     + L Q  GR  R    S  +L A+  T S
Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGYKQSYAVLVANPKTDS 582


>gi|312139811|ref|YP_004007147.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|311889150|emb|CBH48463.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
          Length = 700

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +A+++G R ++   TK  AE +TE L E+ +    +H      +R  ++   + G+  VL
Sbjct: 238 IASREGGRTIMFARTKLGAEGITERLREKGVAAEALHGGKAQNQRTRVLERFKTGRTPVL 297

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           V  ++   G+ +    LV  +D  ++         +   GR AR   + V+
Sbjct: 298 VATDVAARGIHVDGIDLVVHVDPPQD-----HKDYLHRAGRTARAGEAGVV 343


>gi|307288890|ref|ZP_07568863.1| primosomal protein [Enterococcus faecalis TX0109]
 gi|306500162|gb|EFM69506.1| primosomal protein [Enterococcus faecalis TX0109]
 gi|315164417|gb|EFU08434.1| primosomal protein [Enterococcus faecalis TX1302]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|294138788|ref|YP_003554766.1| helicase [Shewanella violacea DSS12]
 gi|293325257|dbj|BAI99987.1| helicase [Shewanella violacea DSS12]
          Length = 1056

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 35/189 (18%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR---SKTSLIQTIG 676
           ER  + +DL+LG  ++L  +++  EG+DIPE         D   FLR   S T  +Q +G
Sbjct: 598 ERHSVRQDLQLGNINILCVVDIFNEGVDIPEI--------DTLLFLRPTESLTIFLQQLG 649

Query: 677 RAARNVNSK-VILYADTI---------TKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           R  R+ + K  +   D +         ++  +  I +T     K++EH   H   P    
Sbjct: 650 RGLRHNDGKECVTVLDFVGNARTEYDFSQKFRALIGKTHTAISKEIEHGFPH--LPLGCH 707

Query: 727 EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRK---QMHLAADNLNFEEA 783
            ++ +    I+L          + +Q  L+++K K+H+++ +    Q    ++ LNF   
Sbjct: 708 IELQKKTKEIILN---------NIKQAILNQQKLKSHIQNFQHHTVQKLTLSNFLNFYPN 758

Query: 784 ARIRDEIKR 792
            R+ D  K+
Sbjct: 759 IRLIDIYKK 767


>gi|256962964|ref|ZP_05567135.1| primosomal protein n [Enterococcus faecalis HIP11704]
 gi|307273624|ref|ZP_07554852.1| primosomal protein [Enterococcus faecalis TX0855]
 gi|256953460|gb|EEU70092.1| primosomal protein n [Enterococcus faecalis HIP11704]
 gi|306509637|gb|EFM78679.1| primosomal protein [Enterococcus faecalis TX0855]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|256761050|ref|ZP_05501630.1| primosomal protein n [Enterococcus faecalis T3]
 gi|256682301|gb|EEU21996.1| primosomal protein n [Enterococcus faecalis T3]
          Length = 797

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 590 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 649

Query: 676 GRAAR 680
           GRA R
Sbjct: 650 GRAGR 654


>gi|255974263|ref|ZP_05424849.1| primosomal protein n [Enterococcus faecalis T2]
 gi|255967135|gb|EET97757.1| primosomal protein n [Enterococcus faecalis T2]
          Length = 797

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 590 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 649

Query: 676 GRAAR 680
           GRA R
Sbjct: 650 GRAGR 654


>gi|300861573|ref|ZP_07107657.1| primosomal protein N' [Enterococcus faecalis TUSoD Ef11]
 gi|295114434|emb|CBL33071.1| replication restart DNA helicase PriA [Enterococcus sp. 7L76]
 gi|300849034|gb|EFK76787.1| primosomal protein N' [Enterococcus faecalis TUSoD Ef11]
 gi|315144144|gb|EFT88160.1| primosomal protein [Enterococcus faecalis TX2141]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|225555683|gb|EEH03974.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus G186AR]
          Length = 544

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  ++V  ++  
Sbjct: 376 KVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVAS 435

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+ +  +  +L+ D   +  +    +  IGR  R
Sbjct: 436 RGIDVRD--ITHVLNYD---YPNNSEDYVHRIGRTGR 467


>gi|157873736|ref|XP_001685372.1| ATP-dependent RNA helicase-like protein; RNA helicase [Leishmania
           major strain Friedlin]
 gi|68128444|emb|CAJ08547.1| putative RNA helicase [Leishmania major strain Friedlin]
          Length = 580

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +   +++L E +    + +  MH+++   +R E +   RLGK  VLV   LL  
Sbjct: 379 VLVFVQSVERSKELYEEIRMEGLHMAIMHAKMTVEQREETVLQFRLGKIWVLVTTELLAR 438

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G V   D     F  +  S I  +GR  R
Sbjct: 439 GIDFKNVGTVINFD-----FPATVDSYIHRVGRTGR 469


>gi|148229654|ref|NP_001084230.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus laevis]
 gi|8163810|gb|AAF73861.1|AF218580_1 p68 RNA helicase [Xenopus laevis]
          Length = 608

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  +DLT  L         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 341 KTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIATDVAS 400

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     +  S    I  IGR AR
Sbjct: 401 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTAR 432


>gi|62740097|gb|AAH94097.1| Unknown (protein for MGC:115016) [Xenopus laevis]
          Length = 695

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 472 DLLNATGKDSL-TLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 530

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N K I 
Sbjct: 531 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNI- 589

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 590 ---NITKDL 595


>gi|9438227|gb|AAF86585.1| DEAD box RNA helicase [Homo sapiens]
          Length = 724

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+    +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 542 RTMVFVETKKKADFTATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAA 601

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 602 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 645


>gi|29377580|ref|NP_816734.1| primosomal protein n' [Enterococcus faecalis V583]
 gi|227554545|ref|ZP_03984592.1| primosomal replication protein n [Enterococcus faecalis HH22]
 gi|257417969|ref|ZP_05594963.1| primosomal protein N [Enterococcus faecalis T11]
 gi|29345047|gb|AAO82804.1| primosomal protein n' [Enterococcus faecalis V583]
 gi|227176343|gb|EEI57315.1| primosomal replication protein n [Enterococcus faecalis HH22]
 gi|257159797|gb|EEU89757.1| primosomal protein N [Enterococcus faecalis T11]
 gi|315573273|gb|EFU85464.1| primosomal protein [Enterococcus faecalis TX0309B]
 gi|315581153|gb|EFU93344.1| primosomal protein [Enterococcus faecalis TX0309A]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|143456452|sp|Q0DB53|RH52A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52A
 gi|51090883|dbj|BAD35456.1| putative DEAD-box protein 3 [Oryza sativa Japonica Group]
 gi|222635845|gb|EEE65977.1| hypothetical protein OsJ_21891 [Oryza sativa Japonica Group]
          Length = 602

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L  +LY +      +H +    ER   +R  + G   ++V  ++   G
Sbjct: 355 LVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRG 414

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LD+P    V   D  K     S    +  IGR  R
Sbjct: 415 LDVPNVAHVINYDLPK-----SIEDYVHRIGRTGR 444


>gi|45185939|ref|NP_983655.1| ACR253Cp [Ashbya gossypii ATCC 10895]
 gi|74694768|sp|Q75BL8|IF4A_ASHGO RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|44981729|gb|AAS51479.1| ACR253Cp [Ashbya gossypii ATCC 10895]
          Length = 396

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 55/100 (55%), Gaps = 7/100 (7%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           + D+YD I++      + ++   T+R  E+LT+ L + +  V  ++S++   +R  I+++
Sbjct: 252 LSDLYDSISVT-----QAVIFCNTRRKVEELTKRLTDDSFTVSAIYSDLPQAQRDTIMKE 306

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFL 665
            R G   +L+  +LL  G+D+ +  LV   D   +KE ++
Sbjct: 307 FRTGSSRILISTDLLARGIDVQQVSLVINYDLPNNKENYI 346


>gi|109896747|ref|YP_660002.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109699028|gb|ABG38948.1| ATP-dependent RNA helicase CsdA [Pseudoalteromonas atlantica T6c]
          Length = 579

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 8/125 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK    +L+E L  R   V  ++ ++    R   +  L+ GK D+LV  +++  
Sbjct: 249 VIIFVRTKTATMELSEKLSARGYAVEPLNGDIPQNSRERTVERLKRGKIDILVATDVVAR 308

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  ++  IL+     K +  +I+
Sbjct: 309 GLDVERVSHVINYDVPYDTESYVHR----IGRTGRAGRQGDA--ILFISHREKRMLFSIE 362

Query: 703 ETTRR 707
             TR+
Sbjct: 363 RATRQ 367


>gi|321476790|gb|EFX87750.1| hypothetical protein DAPPUDRAFT_306525 [Daphnia pulex]
          Length = 494

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 3/111 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++ A  L E +      V  +  E++  +RI II   R GK  VL+  N++  G+D+ +
Sbjct: 355 TRKTASWLAETMSREGHAVALLSGELEIDQRINIINRFREGKEKVLITTNVMARGIDVEQ 414

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             +V   D   D+ G    +T L   IGR  R   S V +      +S+Q+
Sbjct: 415 VTMVVNFDLPVDQNGRADCETYL-HRIGRTGRFGKSGVAINLVDGPRSMQV 464


>gi|313901534|ref|ZP_07834979.1| ATP-dependent DNA helicase RecG [Thermaerobacter subterraneus DSM
           13965]
 gi|313468195|gb|EFR63664.1| ATP-dependent DNA helicase RecG [Thermaerobacter subterraneus DSM
           13965]
          Length = 930

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 34/193 (17%)

Query: 599 TEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            EY+  R   +RV  +H  +   E+  ++R       DVLV   ++  G+D+P   ++ I
Sbjct: 736 AEYVARRYPRLRVGILHGRMPGPEKERVMRAFERRALDVLVATTVIEVGVDVPNATVMII 795

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSIQLAIDETTR--------- 706
             AD+ G       L Q  GR  R    S  IL AD  +   ++ ++   R         
Sbjct: 796 EGADRFGL----AQLHQLRGRVGRGSKESLCILVADPASAEGRMRLEALCRSQSGFDIAE 851

Query: 707 -----RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG- 760
                R        ++H +         + + DP+  +DA    ++ +A +  L +  G 
Sbjct: 852 FDLQLRGPGDFFGTRQHGL-------PALRIADPV--KDAGLLRLAREAARRLLERDPGL 902

Query: 761 --KAHLKSLRKQM 771
              AH +SLR+++
Sbjct: 903 DAPAH-RSLREEV 914


>gi|313123075|ref|YP_004033334.1| dead box ATP-dependent RNA helicase srmb [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312279638|gb|ADQ60357.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 481

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++    R+++++  + G+ D+LV  ++   GLDI  
Sbjct: 250 TKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILVATDVAARGLDI-- 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            G+  + + D     +   S +  IGR  R   S
Sbjct: 308 SGVTHVYNYD---IPQDPDSYVHRIGRTGRAGKS 338


>gi|312902125|ref|ZP_07761385.1| primosomal protein [Enterococcus faecalis TX0470]
 gi|311290789|gb|EFQ69345.1| primosomal protein [Enterococcus faecalis TX0470]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|306814036|ref|ZP_07448209.1| transcription-repair coupling factor [Escherichia coli NC101]
 gi|305852673|gb|EFM53121.1| transcription-repair coupling factor [Escherichia coli NC101]
          Length = 1148

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|303228966|ref|ZP_07315776.1| conserved hypothetical protein [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516380|gb|EFL58312.1| conserved hypothetical protein [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 179

 Score = 40.8 bits (94), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 27/37 (72%)

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           K +  +K LR+Q+  A  + NFEEAA+IRD+IK L+S
Sbjct: 136 KAQYEIKQLRRQLETAIGDENFEEAAQIRDKIKALES 172


>gi|283771250|ref|ZP_06344139.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus H19]
 gi|283459455|gb|EFC06548.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus H19]
          Length = 506

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 336


>gi|257417252|ref|ZP_05594246.1| primosomal protein n [Enterococcus faecalis AR01/DG]
 gi|257159080|gb|EEU89040.1| primosomal protein n [Enterococcus faecalis ARO1/DG]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|256958402|ref|ZP_05562573.1| primosomal protein n [Enterococcus faecalis DS5]
 gi|257078287|ref|ZP_05572648.1| primosomal protein n [Enterococcus faecalis JH1]
 gi|294779978|ref|ZP_06745358.1| primosomal protein N' [Enterococcus faecalis PC1.1]
 gi|307270560|ref|ZP_07551858.1| primosomal protein [Enterococcus faecalis TX4248]
 gi|256948898|gb|EEU65530.1| primosomal protein n [Enterococcus faecalis DS5]
 gi|256986317|gb|EEU73619.1| primosomal protein n [Enterococcus faecalis JH1]
 gi|294452959|gb|EFG21381.1| primosomal protein N' [Enterococcus faecalis PC1.1]
 gi|306513141|gb|EFM81775.1| primosomal protein [Enterococcus faecalis TX4248]
 gi|315034826|gb|EFT46758.1| primosomal protein [Enterococcus faecalis TX0027]
 gi|315146581|gb|EFT90597.1| primosomal protein [Enterococcus faecalis TX4244]
 gi|329576777|gb|EGG58270.1| primosomal protein [Enterococcus faecalis TX1467]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|218281658|ref|ZP_03488059.1| hypothetical protein EUBIFOR_00626 [Eubacterium biforme DSM 3989]
 gi|218217265|gb|EEC90803.1| hypothetical protein EUBIFOR_00626 [Eubacterium biforme DSM 3989]
          Length = 614

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E +T+ L  +++R+  +H ++ + E+ E +      +FD+LV   ++  G+D+    ++ 
Sbjct: 432 EGMTKTL--KDVRIGLLHGKMTSQEKEETMAKFSKHEFDILVSTTVIEVGIDVANASVMV 489

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN 681
           I DA + G     ++L Q  GR AR+
Sbjct: 490 IYDAHRFGL----STLHQLRGRVARD 511


>gi|200390896|ref|ZP_03217507.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199603341|gb|EDZ01887.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 1148

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 60/303 (19%), Positives = 124/303 (40%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E   +
Sbjct: 130 --------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQ-PY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + +    
Sbjct: 181 RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWR-DTF 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E++++     A+ + Q+++         G+  +   Y + L      EP P LF Y P +
Sbjct: 236 EVKRD-----AEHIYQQVS--------KGTLPAGIEYWQPLFF---SEPLPPLFSYFPAN 279

Query: 469 SLL 471
           +++
Sbjct: 280 TMV 282



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|52430509|gb|AAH82849.1| DDX5 protein [Xenopus laevis]
          Length = 608

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  +DLT  L         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 341 KTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIATDVAS 400

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     +  S    I  IGR AR
Sbjct: 401 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTAR 432


>gi|45709504|gb|AAH67585.1| Ddx5 protein [Danio rerio]
          Length = 496

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  +DLT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 345 KTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILIATDVAS 404

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            GLD+ +   V   D     +  +    I  IGR AR+
Sbjct: 405 RGLDVEDVKFVINFD-----YPNNSEDYIHRIGRTARS 437


>gi|34364998|emb|CAE46035.1| hypothetical protein [Homo sapiens]
          Length = 496

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 309 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 368

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 369 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 417

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 418 VLMDLKALLLEAKQKVPP 435


>gi|332686449|ref|YP_004456223.1| ATP-dependent RNA helicase YqfR [Melissococcus plutonius ATCC
           35311]
 gi|332370458|dbj|BAK21414.1| ATP-dependent RNA helicase YqfR [Melissococcus plutonius ATCC
           35311]
          Length = 449

 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 14/155 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++T YL E  +RV  +H ++   ER  ++R ++  ++  +V  +L   G+DI  
Sbjct: 252 TKQRVDEITTYLKEHGLRVAKIHGDISPRERKRVMRQVQNLEYQYVVATDLAARGIDIE- 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADT----ITKSIQLAIDET 704
            G+  +++ +     +     I  +GR  RN    + + LY+      IT+  +L I  T
Sbjct: 311 -GVSEVINTE---IPKDLDFFIHRVGRTGRNGLKGTAITLYSPADEQQITEIEKLGI--T 364

Query: 705 TRRRE-KQLEHNKKHNINPQSVKEKIMEVIDPILL 738
            + +E K  E    ++ N +  +EK  + +DPIL+
Sbjct: 365 FQPKEIKNGEIIATYDRNRRLKREKTQDELDPILI 399


>gi|315150902|gb|EFT94918.1| primosomal protein [Enterococcus faecalis TX0012]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|307292142|ref|ZP_07572008.1| primosomal protein [Enterococcus faecalis TX0411]
 gi|306496795|gb|EFM66346.1| primosomal protein [Enterococcus faecalis TX0411]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|301023324|ref|ZP_07187117.1| transcription-repair coupling factor [Escherichia coli MS 69-1]
 gi|300397049|gb|EFJ80587.1| transcription-repair coupling factor [Escherichia coli MS 69-1]
          Length = 1164

 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 247 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.4 bits (85), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|281346961|gb|EFB22545.1| hypothetical protein PANDA_001614 [Ailuropoda melanoleuca]
          Length = 765

 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK+ A++L++ +  +    + +H ++   +R   ++  R G F VLV  N+  
Sbjct: 413 RTIIFCETKKEAQELSQNVSIKQ-DAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAA 471

Query: 644 EGLDIPECGLV 654
            GLDIPE  LV
Sbjct: 472 RGLDIPEVDLV 482


>gi|256960471|ref|ZP_05564642.1| primosomal protein n [Enterococcus faecalis Merz96]
 gi|293385129|ref|ZP_06630955.1| primosomal proteiN n [Enterococcus faecalis R712]
 gi|293389102|ref|ZP_06633574.1| primosomal proteiN n [Enterococcus faecalis S613]
 gi|312906687|ref|ZP_07765687.1| primosomal protein [Enterococcus faecalis DAPTO 512]
 gi|312910851|ref|ZP_07769687.1| primosomal protein N' [Enterococcus faecalis DAPTO 516]
 gi|256950967|gb|EEU67599.1| primosomal protein n [Enterococcus faecalis Merz96]
 gi|291077606|gb|EFE14970.1| primosomal proteiN n [Enterococcus faecalis R712]
 gi|291081570|gb|EFE18533.1| primosomal proteiN n [Enterococcus faecalis S613]
 gi|310627335|gb|EFQ10618.1| primosomal protein [Enterococcus faecalis DAPTO 512]
 gi|311288874|gb|EFQ67430.1| primosomal protein N' [Enterococcus faecalis DAPTO 516]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|256618120|ref|ZP_05474966.1| primosomal protein n [Enterococcus faecalis ATCC 4200]
 gi|256597647|gb|EEU16823.1| primosomal protein n [Enterococcus faecalis ATCC 4200]
 gi|315031810|gb|EFT43742.1| primosomal protein [Enterococcus faecalis TX0017]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|255716972|ref|XP_002554767.1| KLTH0F13310p [Lachancea thermotolerans]
 gi|238936150|emb|CAR24330.1| KLTH0F13310p [Lachancea thermotolerans]
          Length = 1028

 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E++R  + G +++LV  ++  EGLDI E  L+   DA       S    IQ +GR  R  
Sbjct: 556 EVLRKFKDGTYNILVCTSIGEEGLDIGEVDLIICYDA-----TSSPIKNIQRMGRTGRKR 610

Query: 683 NSKVIL 688
           + K++L
Sbjct: 611 DGKIVL 616


>gi|227517268|ref|ZP_03947317.1| primosomal replication protein n [Enterococcus faecalis TX0104]
 gi|227075275|gb|EEI13238.1| primosomal replication protein n [Enterococcus faecalis TX0104]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|307153455|ref|YP_003888839.1| primosomal protein N' [Cyanothece sp. PCC 7822]
 gi|306983683|gb|ADN15564.1| primosomal protein N' [Cyanothece sp. PCC 7822]
          Length = 835

 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 13/101 (12%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ ++LT+   + R++R     +  K   R E+I     G+ DVLVG  +L +GLD+ 
Sbjct: 599 TQKVTQELTQMFPDLRSLRFDSDTTSRKGAHR-ELISQFARGEADVLVGTQMLTKGLDLA 657

Query: 650 ECGLVAILDADKEGFL---------RSKTSLIQTIGRAARN 681
              LV ++ AD  G L         R+  +L Q  GRA R 
Sbjct: 658 GVTLVGVVAAD--GLLYHSDYRASERAFQTLTQVAGRAGRG 696


>gi|254372315|ref|ZP_04987806.1| hypothetical protein FTCG_01382 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570044|gb|EDN35698.1| hypothetical protein FTCG_01382 [Francisella novicida GA99-3549]
          Length = 648

 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 8/107 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            K + ++L E L + N+ + Y    +K+ ++IE +   +  K+ VLV   ++  G+D+P 
Sbjct: 490 VKTLYQELLEALGKENVGLVY--GSMKSKDKIEQMAAFKAKKYAVLVATTVIEVGVDVPN 547

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
             ++ I +A++ G     + L Q  GR  R       ++LY+D I++
Sbjct: 548 ATIMIIDNAERLGI----SQLHQLRGRVGRGAKESYCILLYSDKISE 590


>gi|134301433|ref|YP_001121401.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049210|gb|ABO46281.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 679

 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 8/107 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            K + ++L E L + N+ + Y    +K+ ++IE +   +  K+ VLV   ++  G+D+P 
Sbjct: 490 VKTLYQELLEALGKENVGLVY--GSMKSKDKIEQMAAFKAKKYAVLVATTVIEVGVDVPN 547

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
             ++ I +A++ G     + L Q  GR  R       ++LY+D I++
Sbjct: 548 ATIMIIDNAERLGI----SQLHQLRGRVGRGAKESYCILLYSDKISE 590


>gi|118496945|ref|YP_897995.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           novicida U112]
 gi|194324173|ref|ZP_03057947.1| type III restriction enzyme, res subunit family [Francisella
           tularensis subsp. novicida FTE]
 gi|118422851|gb|ABK89241.1| ATP-dependent DNA helicase [Francisella novicida U112]
 gi|194321620|gb|EDX19104.1| type III restriction enzyme, res subunit family [Francisella
           tularensis subsp. novicida FTE]
          Length = 679

 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 8/107 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            K + ++L E L + N+ + Y    +K+ ++IE +   +  K+ VLV   ++  G+D+P 
Sbjct: 490 VKTLYQELLEALGKENVGLVY--GSMKSKDKIEQMAAFKAKKYAVLVATTVIEVGVDVPN 547

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
             ++ I +A++ G     + L Q  GR  R       ++LY+D I++
Sbjct: 548 ATIMIIDNAERLGI----SQLHQLRGRVGRGAKESYCILLYSDKISE 590


>gi|80979097|gb|ABB54751.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 15/115 (13%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      +++    +Q+ GR AR   +
Sbjct: 440 IQQFRDGNANLMICSSVLEEGIDVQACNHVFILDP-----VKTFNMYVQSKGR-ARTTEA 493

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           K +L+          A  E  +  ++  ++ K HN   + +K++++E  +P L E
Sbjct: 494 KFVLFT---------ADKEREKTIQQIYQYRKAHNDIAEYLKDRVLEKTEPELYE 539


>gi|89255931|ref|YP_513293.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314413|ref|YP_763136.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501920|ref|YP_001427985.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167009166|ref|ZP_02274097.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367289|ref|ZP_04983316.1| ATP-dependent DNA helicase recG [Francisella tularensis subsp.
           holarctica 257]
 gi|290953712|ref|ZP_06558333.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312947|ref|ZP_06803666.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89143762|emb|CAJ78964.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129312|gb|ABI82499.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253106|gb|EBA52200.1| ATP-dependent DNA helicase recG [Francisella tularensis subsp.
           holarctica 257]
 gi|156252523|gb|ABU61029.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 679

 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 8/107 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            K + ++L E L + N+ + Y    +K+ ++IE +   +  K+ VLV   ++  G+D+P 
Sbjct: 490 VKTLYQELLEALGKENVGLVY--GSMKSKDKIEQMAAFKAKKYAVLVATTVIEVGVDVPN 547

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
             ++ I +A++ G     + L Q  GR  R       ++LY+D I++
Sbjct: 548 ATIMIIDNAERLGI----SQLHQLRGRVGRGAKESYCILLYSDKISE 590


>gi|28378315|ref|NP_785207.1| primosomal protein N' [Lactobacillus plantarum WCFS1]
 gi|28271150|emb|CAD64055.1| primosomal protein N' [Lactobacillus plantarum WCFS1]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+++ E+L + L + NI      +  K     +++     G+ D+L+G  ++ +GLD P 
Sbjct: 566 TEKVEEELQDLLPDANIIRMDNDTTRKKGAHAKLLAQFGSGEADILIGTQMIAKGLDFPN 625

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
             LV +L+AD    L       R+   L Q  GRA R
Sbjct: 626 VTLVGVLNADTALGLPDFRASERTFQLLTQVSGRAGR 662


>gi|332884982|gb|EGK05235.1| hypothetical protein HMPREF9456_02905 [Dysgonomonas mossii DSM
           22836]
          Length = 1097

 Score = 40.8 bits (94), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 75/153 (49%), Gaps = 21/153 (13%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEV-K 617
           I + +  +E  YD I +A          V  +  AE++ E +Y++       ++HS + K
Sbjct: 361 IETLKRDLEAGYDHILMA---------RVDERSKAEEVYEQIYKKYSEYSPVFIHSGISK 411

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TL+R EI+  ++  +  ++V +++L EG D+P+  + A+ +  K     + T+  Q IGR
Sbjct: 412 TLQR-EILEGIKEKRHRIIVCVDMLGEGFDLPQLKICAMHEMHK-----NITTSFQFIGR 465

Query: 678 AARNVNSKV---ILYADTITKSIQLAIDETTRR 707
             R   S +    + A+ +  S +  + E  R+
Sbjct: 466 FTRTTGSNLGPATIIANIVDNSFKGVLSELYRK 498


>gi|327536242|gb|AEA95076.1| DNA replication factor Y [Enterococcus faecalis OG1RF]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|320197559|gb|EFW72172.1| Transcription-repair coupling factor [Escherichia coli WV_060327]
          Length = 1148

 Score = 40.8 bits (94), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 231 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|314933981|ref|ZP_07841346.1| putative prophage LambdaSa03, helicase [Staphylococcus caprae C87]
 gi|313654131|gb|EFS17888.1| putative prophage LambdaSa03, helicase [Staphylococcus caprae C87]
          Length = 469

 Score = 40.8 bits (94), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 4/78 (5%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT--LERIEIIRDLRLGKFDVLVG 638
            G + +L   +   ++++ E    RN  +   H++ KT  ++R EI+ + + G   VL  
Sbjct: 215 NGQKTILYAHSIEASKEIAEQF--RNAGIYAEHADAKTSVVKRNEIMMNFKSGIIKVLCN 272

Query: 639 INLLREGLDIPECGLVAI 656
           ++L+ EG D+P+C  V +
Sbjct: 273 VDLISEGFDVPDCTCVIL 290


>gi|257083201|ref|ZP_05577562.1| primosomal protein n [Enterococcus faecalis Fly1]
 gi|256991231|gb|EEU78533.1| primosomal protein n [Enterococcus faecalis Fly1]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|294933328|ref|XP_002780686.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239890671|gb|EER12481.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 166

 Score = 40.8 bits (94), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 2/112 (1%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G ++L+   TKR A+DLT  L         +H + K  ER  ++ + + GK  +++  ++
Sbjct: 3   GSKLLIFTDTKRGADDLTRTLRMDGWPALCIHGDKKQEERDWVLHEFKSGKSPIMIATDV 62

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
              GLD+ +  +  +++ D  G +      I   GRA    N+     AD I
Sbjct: 63  ASRGLDVKD--IRHVVNYDFPGQIEDYVHRIGRTGRAGCKGNAYTFFTADKI 112


>gi|229547450|ref|ZP_04436175.1| primosomal replication protein N [Enterococcus faecalis TX1322]
 gi|256854796|ref|ZP_05560160.1| primosomal protein n' [Enterococcus faecalis T8]
 gi|229307482|gb|EEN73469.1| primosomal replication protein N [Enterococcus faecalis TX1322]
 gi|256710356|gb|EEU25400.1| primosomal protein n' [Enterococcus faecalis T8]
 gi|315028352|gb|EFT40284.1| primosomal protein [Enterococcus faecalis TX4000]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|218190304|gb|EEC72731.1| hypothetical protein OsI_06346 [Oryza sativa Indica Group]
          Length = 1382

 Score = 40.8 bits (94), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 6/108 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I  A ++G ++++   TK+M + L   +  R+     +H +    ER  ++   R G+
Sbjct: 839 EQILRAQERGSKVIIFCSTKKMCDQLARDI-GRSFGAASIHGDKSQAERDNVLNQFRTGR 897

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +LV  ++   GLDI +  +V   D     F       +  IGR  R
Sbjct: 898 APILVATDVAARGLDIKDIRVVINYD-----FPTGIEDYVHRIGRTGR 940


>gi|195588318|ref|XP_002083905.1| GD13105 [Drosophila simulans]
 gi|194195914|gb|EDX09490.1| GD13105 [Drosophila simulans]
          Length = 814

 Score = 40.8 bits (94), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 16/129 (12%)

Query: 567 QVEDVYDE-----------INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           Q+ DV DE            +++A+   + ++ V TK+  +++T  +  +  R   +H +
Sbjct: 375 QIVDVCDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGD 434

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
               ER  ++   R G+  +LV  ++   GLD+ +   V   D     +  +    +  I
Sbjct: 435 KSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYD-----YPSNSEDYVHRI 489

Query: 676 GRAARNVNS 684
           GR  R+ N+
Sbjct: 490 GRTGRSNNT 498


>gi|125559398|gb|EAZ04934.1| hypothetical protein OsI_27114 [Oryza sativa Indica Group]
          Length = 540

 Score = 40.8 bits (94), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 53/96 (55%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L + L   ++R   +H+++   +R + + +LR G+  VL+   ++  
Sbjct: 388 VLIFVQSKERAKELYKELAFDDVRADVIHADLDEEQRQDAVDNLRAGQTWVLIATEVIAR 447

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G+  +++ D   F  S ++ I  IGR+ R
Sbjct: 448 GMDFK--GVNCVINYD---FPESASAYIHRIGRSGR 478


>gi|66767742|ref|YP_242504.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|66573074|gb|AAY48484.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1155

 Score = 40.8 bits (94), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I + +     + LER+ +  D +  +F+VL+   ++  G+DIP   
Sbjct: 833 RMQRDLSELVPEARIGIAHGQMPERELERVML--DFQKQRFNVLLSTTIIESGIDIPNAN 890

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD+ G       L Q  GR  R+
Sbjct: 891 TIIINRADRFGL----AQLHQLRGRVGRS 915


>gi|187730283|ref|YP_001880716.1| transcription-repair coupling factor [Shigella boydii CDC 3083-94]
 gi|187427275|gb|ACD06549.1| transcription-repair coupling factor [Shigella boydii CDC 3083-94]
          Length = 1148

 Score = 40.8 bits (94), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRYVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|325957104|ref|YP_004292516.1| ATP-dependent DNA helicase RecG [Lactobacillus acidophilus 30SC]
 gi|325333669|gb|ADZ07577.1| ATP-dependent DNA helicase RecG [Lactobacillus acidophilus 30SC]
          Length = 678

 Score = 40.8 bits (94), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 17/187 (9%)

Query: 523 PTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           P  + ++ATP   +  L     + V +I        P +      +Q++DVY  +     
Sbjct: 404 PDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISAWKTSSQMKDVYKLMYEQLD 463

Query: 581 QGLRI-----LLT---VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRL 630
           QG +I     L+T    L  + AE+L E L     +  V  +H ++   ++ EI+     
Sbjct: 464 QGFQIYAVTPLITESETLDLKNAEELHEKLSHDFPDQNVVLLHGQMPGAKKDEIMSAFAS 523

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILY 689
           G+ ++LV  +++  G+D+    ++ I +AD+ G     + L Q  GR  R    S  I  
Sbjct: 524 GEINILVTTSVIEVGVDVANANMMVIYNADRFGL----SQLHQLRGRIGRGQTQSYCIFI 579

Query: 690 ADTITKS 696
           AD  T S
Sbjct: 580 ADPKTDS 586



 Score = 37.7 bits (86), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 560 EIRSART--QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T   V  ++  I+   Q  L +   +L  +  + + E L    +RV  +    K
Sbjct: 284 DVGSGKTVVAVYAIFAAISAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 343

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           TLER EI R+L  G  + ++G + L+++ +   + GLV I
Sbjct: 344 TLERREIYRELTDGTINAVIGTHALIQKNVIFKKLGLVII 383


>gi|317404929|gb|EFV85296.1| ATP-dependent DNA helicase [Achromobacter xylosoxidans C54]
          Length = 696

 Score = 40.8 bits (94), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H  +   E+  +++  R G+ D+LV   ++  G+D+P   L+ I  A++ G  
Sbjct: 520 DLRIGLVHGRLPQAEKAAVMQAFREGEIDLLVATTVIEVGVDVPNASLMVIEHAERFGL- 578

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITK 695
                L Q  GR  R       V+LY   +++
Sbjct: 579 ---AQLHQLRGRVGRGTAESVCVLLYQTPLSQ 607


>gi|297157473|gb|ADI07185.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 587

 Score = 40.8 bits (94), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 33/64 (51%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TKR A D+ + L  R      +H ++    R + +R  R GK DVLV  ++   
Sbjct: 225 VMIFCRTKRTAADIADQLAHRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVATDVAAR 284

Query: 645 GLDI 648
           G+D+
Sbjct: 285 GIDV 288


>gi|293605612|ref|ZP_06687992.1| DNA helicase RecG [Achromobacter piechaudii ATCC 43553]
 gi|292815992|gb|EFF75093.1| DNA helicase RecG [Achromobacter piechaudii ATCC 43553]
          Length = 696

 Score = 40.8 bits (94), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H  +   E+  +++  R G+ D+LV   ++  G+D+P   L+ I  A++ G  
Sbjct: 520 DLRIGLVHGRLPQAEKAAVMQAFREGEVDLLVATTVIEVGVDVPNASLMVIEHAERFGL- 578

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITK 695
                L Q  GR  R       V+LY   +++
Sbjct: 579 ---AQLHQLRGRVGRGTAESVCVLLYQTPLSQ 607


>gi|253996647|ref|YP_003048711.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
           mobilis JLW8]
 gi|253983326|gb|ACT48184.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
          Length = 576

 Score = 40.8 bits (94), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR A+ L E LY    +   +H ++    R   +  LR G   VLV  ++   G+D+  
Sbjct: 253 TKRHADVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRHGDVKVLVATDVAARGIDV-- 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDETTRRR 708
            G+  +++ D   F       +  IGR  R  N+ + I +A  + + +   I++ T  R
Sbjct: 311 HGITHVINYDLPKF---AEDYVHRIGRTGRANNTGIAISFASNMDRHLLRKIEQYTGNR 366


>gi|194748100|ref|XP_001956487.1| GF25239 [Drosophila ananassae]
 gi|190623769|gb|EDV39293.1| GF25239 [Drosophila ananassae]
          Length = 535

 Score = 40.8 bits (94), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +QGL+  +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G   VL+
Sbjct: 355 RQGLQPPVLVFVQSKDRAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFREGSIWVLI 414

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+  G+D     LV   D     F  +  S I  IGR  R
Sbjct: 415 CTELMGRGIDFKGVNLVINYD-----FPPTTISYIHRIGRTGR 452


>gi|166711350|ref|ZP_02242557.1| transcription-repair coupling factor [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 1154

 Score = 40.8 bits (94), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I + +     + LER+ +  D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRDLSELVPEARIGIAHGQMPERELERVML--DFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD+ G       L Q  GR  R+
Sbjct: 890 TIIINRADRFGL----AQLHQLRGRVGRS 914


>gi|254373789|ref|ZP_04989272.1| ATP-dependent DNA helicase RecG [Francisella novicida GA99-3548]
 gi|151571510|gb|EDN37164.1| ATP-dependent DNA helicase RecG [Francisella novicida GA99-3548]
          Length = 679

 Score = 40.8 bits (94), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 8/107 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            K + ++L E L + N+ + Y    +K+ ++IE +   +  K+ VLV   ++  G+D+P 
Sbjct: 490 VKTLYQELLEALGKENVGLVY--GSMKSKDKIEQMAAFKAKKYAVLVATTVIEVGVDVPN 547

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
             ++ I +A++ G     + L Q  GR  R       ++LY+D I++
Sbjct: 548 ATIMIIDNAERLGI----SQLHQLRGRVGRGAKESYCILLYSDKISE 590


>gi|84623030|ref|YP_450402.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84366970|dbj|BAE68128.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 1154

 Score = 40.8 bits (94), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I + +     + LER+ +  D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRDLSELVPEARIGIAHGQMPERELERVML--DFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD+ G       L Q  GR  R+
Sbjct: 890 TIIINRADRFGL----AQLHQLRGRVGRS 914


>gi|45361303|ref|NP_989229.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
 gi|38969901|gb|AAH63223.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
 gi|89271852|emb|CAJ81861.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
          Length = 609

 Score = 40.8 bits (94), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  +DLT  L         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 341 KTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIATDVAS 400

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     +  S    I  IGR AR
Sbjct: 401 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTAR 432


>gi|331672629|ref|ZP_08373418.1| transcription-repair coupling factor [Escherichia coli TA280]
 gi|331070272|gb|EGI41638.1| transcription-repair coupling factor [Escherichia coli TA280]
          Length = 1164

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 247 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|330470231|ref|YP_004407974.1| dead/deah box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328813202|gb|AEB47374.1| dead/deah box helicase domain protein [Verrucosispora maris
           AB-18-032]
          Length = 563

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL ++ T  TKR A+ + E L  R   V  +H ++    R   +R  R GK D LV
Sbjct: 267 AESRGLTMIFT-RTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTLV 325

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             ++   G+D+   G+  +++ D       + +    IGR  R   S V +
Sbjct: 326 ATDVAARGIDV--TGVTHVINYDCP---EDQDTYTHRIGRTGRAGASGVAV 371


>gi|328772988|gb|EGF83025.1| hypothetical protein BATDEDRAFT_29115 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 483

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR A+D+T  L         +H + K  ER  ++++ + GK  +L+  ++   GLD+ +
Sbjct: 311 TKRTADDITRDLRHDGFPALAIHGDKKQQERDWVMQEFKSGKTPILIATDVAARGLDVKD 370

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
              V   D     F  +    +  IGR  R  N+K   Y
Sbjct: 371 VKFVINFD-----FPNNIEDYVHRIGRTGR-ANNKGTAY 403


>gi|328676417|gb|AEB27287.1| ATP-dependent DNA helicase RecG [Francisella cf. novicida Fx1]
          Length = 679

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 8/107 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            K + ++L E L + N+ + Y    +K+ ++IE +   +  K+ VLV   ++  G+D+P 
Sbjct: 490 VKTLYQELLEALGKENVGLVY--GSMKSKDKIEQMAAFKAKKYAVLVATTVIEVGVDVPN 547

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
             ++ I +A++ G     + L Q  GR  R       ++LY+D I++
Sbjct: 548 ATIMIIDNAERLGI----SQLHQLRGRVGRGAKESYCILLYSDKISE 590


>gi|325093360|gb|EGC46670.1| dicer-like protein [Ajellomyces capsulatus H88]
          Length = 1436

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DLR GK ++L+  ++L EG+D+  C LV   D      + +  S IQ  GR AR   S
Sbjct: 426 IDDLRSGKKNLLIATSVLEEGIDVSACHLVICFDT-----INNLRSFIQRRGR-ARKERS 479

Query: 685 KVILY 689
           K +++
Sbjct: 480 KFVMF 484


>gi|324005970|gb|EGB75189.1| transcription-repair coupling factor [Escherichia coli MS 57-2]
          Length = 1164

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 247 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.7 bits (86), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|323507844|emb|CBQ67715.1| probable RNA helicase dbp2 (DEAD box protein) [Sporisorium
           reilianum]
          Length = 536

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 6/104 (5%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           ++A  G  I+ T  TKR+A+D+T++L +       +H + +  ER  ++ + + G+  ++
Sbjct: 355 ISADNGKVIIFTS-TKRVADDITKFLRQDGWPALAIHGDKQQQERDWVLAEFKSGRSPIM 413

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V   +   GLD+ +   V   D     F  +    +  IGR  R
Sbjct: 414 VATAVASRGLDVKDISYVINYD-----FPTNTEDYVHQIGRTGR 452


>gi|303241725|ref|ZP_07328222.1| ATP-dependent DNA helicase RecG [Acetivibrio cellulolyticus CD2]
 gi|302590726|gb|EFL60477.1| ATP-dependent DNA helicase RecG [Acetivibrio cellulolyticus CD2]
          Length = 691

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           +++RV  ++ ++K  ++ E++R    G+ D+LV   ++  G+++P   ++ I +A++ G 
Sbjct: 507 KDLRVGLIYGKMKAKDKEEVMRSFVGGEIDILVSTTVIEVGVNVPNASIMVIENAERFGL 566

Query: 665 LRSKTSLIQTIGRAARN-VNSKVILYADTITK 695
                 L Q  GR  R    S  ILY++  T+
Sbjct: 567 ----AQLHQLRGRVGRGEYQSHCILYSEGKTE 594


>gi|281204115|gb|EFA78311.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1026

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 11/136 (8%)

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY-E 604
           + I+  TG+  P V  +    Q+++++++     ++   I++    KR  +  +EYLY E
Sbjct: 726 QHIVATTGMTRPDVA-KMVGEQIQEIHNQ----DKKDNLIIVFCNQKRNCDHFSEYLYNE 780

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
             +    MHS  +  +R   + + +  +  +++  ++   GLDIP    V  LD     F
Sbjct: 781 FQMNSVVMHSGKEQYQRERGLANFKSHRIPIMIATDVAARGLDIPNVKAVVNLD-----F 835

Query: 665 LRSKTSLIQTIGRAAR 680
             +    +  IGR  R
Sbjct: 836 PNNIEDYVHRIGRTGR 851


>gi|239982544|ref|ZP_04705068.1| ATP-dependent DNA helicase RecG [Streptomyces albus J1074]
 gi|291454386|ref|ZP_06593776.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
 gi|291357335|gb|EFE84237.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 734

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  +   ++ +++R    G+ DVLV   ++  G+++P    + I+DAD+ G  
Sbjct: 550 GLRIEVLHGRMAPDDKDDVMRRFAAGEVDVLVATTVIEVGVNVPNATAMVIMDADRFGV- 608

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R     + L
Sbjct: 609 ---SQLHQLRGRVGRGSAPGLCL 628


>gi|239918016|ref|YP_002957574.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
 gi|239839223|gb|ACS31020.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
          Length = 611

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TKR A  + + L  R      +H ++    R + +R  R GK D+LV  ++  
Sbjct: 293 RTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAFRNGKVDILVATDVAA 352

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+D+ +   V    A ++     + + +  +GR  R  N  V +
Sbjct: 353 RGIDVDDVTHVFNFQAPED-----EKTYVHRVGRTGRAGNKGVAV 392


>gi|288574800|ref|ZP_06393157.1| transcription-repair coupling factor [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570541|gb|EFC92098.1| transcription-repair coupling factor [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 1014

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 3/112 (2%)

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           +S   G+ S    S+ ++ L+IG+   +  L+S L    Y R D+    G + V G  ++
Sbjct: 94  ISTPGGMMSPFMNSEGLLSLRIGECAGRDRLISWLDSSGYSRSDLVWKPGEYAVRGGIVD 153

Query: 338 IF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           +F PS    +  RV  F ++IEE+  F P        VE   ++     VTP
Sbjct: 154 LFDPS--SRMPLRVVFFDDEIEEMRLFSPEDQTSKCKVEAFSVWELGDRVTP 203


>gi|262203393|ref|YP_003274601.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262086740|gb|ACY22708.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 543

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR A+ + + L ER  +V  +H ++  + R + ++  R G  DVLV  ++   G+DI +
Sbjct: 293 TKRTAQKVADDLAERGFKVGAVHGDLGQVAREKALKRFRDGTIDVLVATDVAARGIDIDD 352

Query: 651 C 651
            
Sbjct: 353 V 353


>gi|224418611|ref|ZP_03656617.1| ATP-dependent DNA helicase RecG [Helicobacter canadensis MIT
           98-5491]
 gi|253826841|ref|ZP_04869726.1| ATP-dependent DNA recombinase RecG [Helicobacter canadensis MIT
           98-5491]
 gi|313142138|ref|ZP_07804331.1| ATP-dependent DNA helicase [Helicobacter canadensis MIT 98-5491]
 gi|253510247|gb|EES88906.1| ATP-dependent DNA recombinase RecG [Helicobacter canadensis MIT
           98-5491]
 gi|313131169|gb|EFR48786.1| ATP-dependent DNA helicase [Helicobacter canadensis MIT 98-5491]
          Length = 613

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 153 QPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFTM-AKVIEAMQRPAIVMAPNKILAAQLY 210
           Q  AI ++   ++S++  + +++G  G GKT  + A V+ A  + +++M P  ILA Q+Y
Sbjct: 235 QEKAILEIASSLNSQKSARRVIVGDVGCGKTMVIFASVLIAYPKRSVLMVPTSILAKQIY 294

Query: 211 SEFKNFFPHN 220
           +E + + P N
Sbjct: 295 NESQKYLPKN 304


>gi|254368764|ref|ZP_04984777.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121685|gb|EDO65855.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 679

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 8/107 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            K + ++L E L + N+ + Y    +K+ ++IE +   +  K+ VLV   ++  G+D+P 
Sbjct: 490 VKTLYQELLEALGKENVGLVY--GSMKSKDKIEQMAAFKAKKYAVLVATTVIEVGVDVPN 547

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
             ++ I +A++ G     + L Q  GR  R       ++LY+D I++
Sbjct: 548 ATIMIIDNAERLGI----SQLHQLRGRVGRGAKESYCILLYSDKISE 590


>gi|145629154|ref|ZP_01784953.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           22.1-21]
 gi|144978657|gb|EDJ88380.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           22.1-21]
          Length = 569

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+ L   NI +  +H  +K  E+ +++   +  + D+LV   ++  G+D+P   L+ 
Sbjct: 385 EDLTKALPMLNIGL--VHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMI 442

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           I +A++ G     + L Q  GR  R   +   V++Y   + K  Q
Sbjct: 443 IENAERLGL----SQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQ 483


>gi|119605383|gb|EAW84977.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_a [Homo
           sapiens]
 gi|119605386|gb|EAW84980.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_a [Homo
           sapiens]
 gi|193787208|dbj|BAG52414.1| unnamed protein product [Homo sapiens]
          Length = 496

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 309 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 368

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 369 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 417

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 418 VLMDLKALLLEAKQKVPP 435


>gi|307284850|ref|ZP_07565006.1| primosomal protein [Enterococcus faecalis TX0860]
 gi|306503109|gb|EFM72366.1| primosomal protein [Enterococcus faecalis TX0860]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|306826192|ref|ZP_07459527.1| transcription-repair coupling factor [Streptococcus sp. oral taxon
           071 str. 73H25AP]
 gi|304431668|gb|EFM34649.1| transcription-repair coupling factor [Streptococcus sp. oral taxon
           071 str. 73H25AP]
          Length = 1167

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 92/197 (46%), Gaps = 15/197 (7%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E  +   +++      A ++ S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEK-ENKIVLLTSTYGEAERIISDLLSLLGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   ++  P  +  +  +  I  +I+ +R  +  S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDS--PMVEFLMSSQEKIISRIEALRFLSDPS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
             + + I+++ +G+  +Q ELL  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 ARFKESIIKIAVGEEYDQHELLHRLKEIGYRKVTQVQTQGEFSIRGDILDIFEMSQLE-- 189

Query: 347 AWRVSMFGNDIEEISEF 363
            +R+  FG++++ I  F
Sbjct: 190 PFRIEFFGDEVDGIRTF 206



 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|258452958|ref|ZP_05700952.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|257859469|gb|EEV82323.1| conserved hypothetical protein [Staphylococcus aureus A5948]
          Length = 360

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 602 LYERNI-RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           +Y++ I ++ Y+HSE   + R E +  LR G FDV+    +L  G  +    +V I DA 
Sbjct: 246 VYKQKITKLTYVHSE--DVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVI-DAH 302

Query: 661 KEGFLRSKTSLIQTIGRAARNV---NSKVILYADTITKSIQLAIDETTR 706
           +     ++ SLIQ  GR  R +     KV+ + + ++ ++  A  E  R
Sbjct: 303 Q----YTQESLIQIAGRVGRKLECPTGKVLFFHEGVSMNMIQAKKEIQR 347


>gi|257420428|ref|ZP_05597418.1| primosomal protein n [Enterococcus faecalis X98]
 gi|257162252|gb|EEU92212.1| primosomal protein n [Enterococcus faecalis X98]
 gi|315154710|gb|EFT98726.1| primosomal protein [Enterococcus faecalis TX0043]
          Length = 810

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|290581017|ref|YP_003485409.1| primosome assembly protein [Streptococcus mutans NN2025]
 gi|254997916|dbj|BAH88517.1| primosome assembly protein [Streptococcus mutans NN2025]
          Length = 794

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPN 202
           D +P  +Q  A+ Q+   I S  K  LL G+TGSGKT     VI+    + + AIV+ P 
Sbjct: 257 DLNP--EQQTAVEQITAAIGSSNKPYLLEGITGSGKTEVYLHVIDQTLKLGKTAIVLVPE 314

Query: 203 KILAAQLYSEFKNFF 217
             L  Q+ S F + F
Sbjct: 315 ISLTPQMTSRFISRF 329


>gi|261403376|ref|YP_003247600.1| reverse gyrase [Methanocaldococcus vulcanius M7]
 gi|261370369|gb|ACX73118.1| reverse gyrase [Methanocaldococcus vulcanius M7]
          Length = 1443

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 19/97 (19%)

Query: 568 VEDVYDE----------INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           VED+YDE          I +    GL  +        AE++ +YL E NI+ + ++S+ K
Sbjct: 301 VEDIYDEEFKKEEVLEYIKIFGSGGLVFVPIDYGVEKAEEIEKYLLENNIKAKLIYSKDK 360

Query: 618 TLERIEIIRDLRLGKFDVLVGI----NLLREGLDIPE 650
                +   + R G+ DVL+G+     +L  GLD+PE
Sbjct: 361 -----KGFEEFRKGEIDVLIGVASYYGVLVRGLDMPE 392


>gi|241760530|ref|ZP_04758623.1| dead/deah box helicase [Neisseria flavescens SK114]
 gi|241319034|gb|EER55536.1| dead/deah box helicase [Neisseria flavescens SK114]
          Length = 464

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              V   D  K+         +  IGR  R
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGR 339


>gi|294933513|ref|XP_002780743.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
 gi|239890799|gb|EER12538.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
          Length = 634

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 558 PVEIRSARTQVE--DVYDEIN-LAAQQGLRILLTVLTKRM------------AEDLTEYL 602
           PV I   R      DV  E+  + A+  L  LL  L K               +++ EYL
Sbjct: 407 PVTINVGRAGAANLDVVQEVEYVKAESKLTYLLQCLQKTAPPVMVFCSDKASCDEVLEYL 466

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
             + +    +H  ++  ER +  R  + G  DVL+G ++  +GLD P    V   D  KE
Sbjct: 467 LLKGVGACAIHGGLEQSERHKSTRLFKSGAKDVLIGTDVASKGLDFPAIQHVINYDMPKE 526

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVIL---YADTITKSIQLAIDETTRRREKQLEH 714
             + +    I   GR  R   +   +     +T+   ++  ++E  +R    LEH
Sbjct: 527 --IENYVHRIGRTGRCGRTGVATTFINKSVDETVLLDLKAILEEAGQRVPPFLEH 579


>gi|261380720|ref|ZP_05985293.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava
           NJ9703]
 gi|284796437|gb|EFC51784.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava
           NJ9703]
          Length = 469

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|218689066|ref|YP_002397278.1| transcription-repair coupling factor [Escherichia coli ED1a]
 gi|218426630|emb|CAR07458.1| transcription-repair coupling factor [Escherichia coli ED1a]
          Length = 1148

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G           + +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 G---------HALAMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 231 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|308803500|ref|XP_003079063.1| putative DEAD-box RNA helicase DEAD3 (ISS) [Ostreococcus tauri]
 gi|116057517|emb|CAL51944.1| putative DEAD-box RNA helicase DEAD3 (ISS) [Ostreococcus tauri]
          Length = 492

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 2/103 (1%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L ++L+        +H +    ER   ++  R GK  +LV  ++   G
Sbjct: 253 LVFVETKRGADQLEDFLFTNGKPATSIHGDRTQQEREAALKSFRSGKTPILVATDVAARG 312

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           LDIP   +  +++ D    +   T  I   GRA +   +  + 
Sbjct: 313 LDIPH--VTHVINFDLPSDIDDYTHRIGRTGRAGKKGRATALF 353


>gi|21232129|ref|NP_638046.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21113878|gb|AAM41970.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 1155

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I + +     + LER+ +  D +  +F+VL+   ++  G+DIP   
Sbjct: 833 RMQRDLSELVPEARIGIAHGQMPERELERVML--DFQKQRFNVLLSTTIIESGIDIPNAN 890

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD+ G       L Q  GR  R+
Sbjct: 891 TIIINRADRFGL----AQLHQLRGRVGRS 915


>gi|56708621|ref|YP_170517.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110671092|ref|YP_667649.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457814|ref|ZP_03666287.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371254|ref|ZP_04987256.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875485|ref|ZP_05248195.1| recG, ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56605113|emb|CAG46234.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321425|emb|CAL09617.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569494|gb|EDN35148.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841484|gb|EET19920.1| recG, ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159858|gb|ADA79249.1| ATP-dependent DNA helicase RecG [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 679

 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 8/107 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            K + ++L E L + N+ + Y    +K+ ++IE +   +  K+ VLV   ++  G+D+P 
Sbjct: 490 VKTLYQELLEALGKENVGLVY--GSMKSKDKIEQMAAFKAKKYAVLVATTVIEVGVDVPN 547

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
             ++ I +A++ G     + L Q  GR  R       ++LY+D I++
Sbjct: 548 ATIMIIDNAERLGI----SQLHQLRGRVGRGAKESYCILLYSDKISE 590


>gi|311068108|ref|YP_003973031.1| ATP-dependent DNA helicase RecG [Bacillus atrophaeus 1942]
 gi|310868625|gb|ADP32100.1| ATP-dependent DNA helicase RecG [Bacillus atrophaeus 1942]
          Length = 681

 Score = 40.8 bits (94), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           +Y     V  MH ++ + E+ +++R+    +  +LV   ++  G+++P   ++ I DAD+
Sbjct: 496 VYRGKWNVGLMHGKLHSDEKDQVMREFSANECQILVSTTVVEVGVNVPNATIMVIYDADR 555

Query: 662 EGFLRSKTSLIQTIGRAARN-VNSKVILYAD 691
            G     + L Q  GR  R    S  IL AD
Sbjct: 556 FGL----SQLHQLRGRVGRGEYQSFCILMAD 582


>gi|317575704|ref|NP_001187588.1| eukaryotic initiation factor 4a-i [Ictalurus punctatus]
 gi|308323440|gb|ADO28856.1| eukaryotic initiation factor 4a-i [Ictalurus punctatus]
          Length = 406

 Score = 40.8 bits (94), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDLIMKEFRSGSSRVLITTDLLARGIDVQQ 340

Query: 651 CGLV 654
             LV
Sbjct: 341 VSLV 344


>gi|293404403|ref|ZP_06648397.1| transcription-repair coupling factor [Escherichia coli FVEC1412]
 gi|298380180|ref|ZP_06989785.1| transcription-repair coupling factor [Escherichia coli FVEC1302]
 gi|300896877|ref|ZP_07115367.1| transcription-repair coupling factor [Escherichia coli MS 198-1]
 gi|291428989|gb|EFF02014.1| transcription-repair coupling factor [Escherichia coli FVEC1412]
 gi|298279878|gb|EFI21386.1| transcription-repair coupling factor [Escherichia coli FVEC1302]
 gi|300359284|gb|EFJ75154.1| transcription-repair coupling factor [Escherichia coli MS 198-1]
          Length = 1164

 Score = 40.8 bits (94), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 247 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.7 bits (86), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|284920939|emb|CBG34002.1| transcription-repair coupling factor [Escherichia coli 042]
          Length = 1164

 Score = 40.8 bits (94), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 247 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|256273812|gb|EEU08734.1| Dbp2p [Saccharomyces cerevisiae JAY291]
          Length = 547

 Score = 40.8 bits (94), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+   TKRM +D+T+YL E       +H +    ER  ++++ R G+  ++V  ++  
Sbjct: 362 KTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAA 421

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            G+   + G+  +++ D  G +      I   GRA 
Sbjct: 422 RGIGNVK-GINYVINYDMPGNIEDYVHRIGRTGRAG 456


>gi|225563402|gb|EEH11681.1| dicer-like protein [Ajellomyces capsulatus G186AR]
          Length = 1436

 Score = 40.8 bits (94), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DLR GK ++L+  ++L EG+D+  C LV   D      + +  S IQ  GR AR   S
Sbjct: 426 IDDLRSGKKNLLIATSVLEEGIDVSACHLVICFDT-----INNLRSFIQRRGR-ARKERS 479

Query: 685 KVILY 689
           K +++
Sbjct: 480 KFVMF 484


>gi|207344103|gb|EDZ71352.1| YJL138Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 285

 Score = 40.8 bits (94), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD I++      + ++   T+R  E+LT  L      V  ++S++   ER  I+++ R
Sbjct: 143 DLYDSISVT-----QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR 197

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   +L+  +LL  G+D+ +  LV   D  A+KE ++
Sbjct: 198 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 235


>gi|188575614|ref|YP_001912543.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188520066|gb|ACD58011.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 1154

 Score = 40.8 bits (94), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I + +     + LER+ +  D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRDLSELVPEARIGIAHGQMPERELERVML--DFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD+ G       L Q  GR  R+
Sbjct: 890 TIIINRADRFGL----AQLHQLRGRVGRS 914


>gi|149910751|ref|ZP_01899386.1| hypothetical protein PE36_00195 [Moritella sp. PE36]
 gi|149806191|gb|EDM66170.1| hypothetical protein PE36_00195 [Moritella sp. PE36]
          Length = 555

 Score = 40.8 bits (94), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T   A+D+ +   +  I   ++   +K  ER + ++    G++ VL    LL EG + P 
Sbjct: 232 TVNHAKDVAQAFNDNGIAATHVSGVMKPRERKKRLKAFERGEYQVLTNATLLTEGWNCPP 291

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
              + IL         SK +LIQ  GR  R VN
Sbjct: 292 VSCLLILRGSS-----SKGALIQMAGRVLRKVN 319


>gi|139473203|ref|YP_001127918.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes str.
           Manfredo]
 gi|134271449|emb|CAM29669.1| ATP-dependent DNA helicase [Streptococcus pyogenes str. Manfredo]
          Length = 671

 Score = 40.8 bits (94), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L+ Y +E   +V  +H  +K  E+  I++D +  K  +LV   ++  G+++P   ++ I
Sbjct: 487 ELSTY-FEGIAKVALVHGRMKNDEKDAIMQDFKDKKSHILVSTTVIEVGVNVPNATIMII 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           +DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGHKQSYAVLVANPKTDS 582


>gi|58581095|ref|YP_200111.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425689|gb|AAW74726.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 1154

 Score = 40.8 bits (94), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I + +     + LER+ +  D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRDLSELVPEARIGIAHGQMPERELERVML--DFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD+ G       L Q  GR  R+
Sbjct: 890 TIIINRADRFGL----AQLHQLRGRVGRS 914


>gi|1183961|emb|CAA93395.1| RNA elicase [Saccharomyces cerevisiae]
          Length = 547

 Score = 40.8 bits (94), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+   TKRM +D+T+YL E       +H +    ER  ++++ R G+  ++V  ++  
Sbjct: 362 KTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAA 421

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            G+   + G+  +++ D  G +      I   GRA 
Sbjct: 422 RGIGNVK-GINYVINYDMPGNIEDYVHRIGRTGRAG 456


>gi|328349839|emb|CCA36239.1| hypothetical protein PP7435_Chr1-0071 [Pichia pastoris CBS 7435]
          Length = 483

 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 3/97 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V  K  A  L + + +    V  +H ++++ ER  +I D R G+  VL+  N+L  G
Sbjct: 335 IIFVQRKETANMLYKRMKDEGHTVSILHGDLESSERDRLIDDFREGRSKVLITTNVLARG 394

Query: 646 LDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
           +DI    +V   D   D++G     T L   IGR  R
Sbjct: 395 IDIASVSMVVNYDLPVDRQGNADPSTYL-HRIGRTGR 430


>gi|327303796|ref|XP_003236590.1| DEAD box helicase [Trichophyton rubrum CBS 118892]
 gi|326461932|gb|EGD87385.1| DEAD box helicase [Trichophyton rubrum CBS 118892]
          Length = 654

 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLV 654
           DLT    E  +  RY+  +     R + +   R  +F VLV   L  EG DIP  +C L+
Sbjct: 309 DLTAKFREIGVDARYITGQTPKDVRAKELEAFRNYEFPVLVNCGLFTEGTDIPNIDCVLL 368

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR 680
           A          RSK  LIQ IGR  R
Sbjct: 369 ARP-------TRSKNLLIQMIGRGLR 387


>gi|325091997|gb|EGC45307.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus H88]
          Length = 544

 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  ++V  ++  
Sbjct: 376 KVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVAS 435

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+ +  +  +L+ D   +  +    +  IGR  R
Sbjct: 436 RGIDVRD--ITHVLNYD---YPNNSEDYVHRIGRTGR 467


>gi|313213750|emb|CBY40630.1| unnamed protein product [Oikopleura dioica]
          Length = 416

 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q+ L I+ T  TK+ A+ L  +L+ER  +   +H +    ER E +   + G+  +LV 
Sbjct: 208 GQEMLTIVFTE-TKKGADYLDHFLHERGYQSTCIHGDRNQQEREEAVHLFKSGQTPILVA 266

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
             +   GLDIP    V   D   E         +  IGR  R  N+
Sbjct: 267 TAVAARGLDIPNVRHVINFDLPSE-----IDEYVHRIGRTGRAGNT 307


>gi|318056420|ref|ZP_07975143.1| DEAD-box RNA helicase [Streptomyces sp. SA3_actG]
 gi|318077530|ref|ZP_07984862.1| DEAD-box RNA helicase [Streptomyces sp. SA3_actF]
          Length = 473

 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +AA+ G R+LL + TK   + LTE+L    +R   +H      +R   +   + G   VL
Sbjct: 283 IAARDG-RVLLFLDTKHAVDRLTEHLLRSGVRAAALHGGKSQPQRTRTLEQFKTGHVSVL 341

Query: 637 VGINLLREGLDIPECGLVAILD 658
           V  N+   G+ + +  LV  +D
Sbjct: 342 VATNVAARGIHVDDLDLVVNVD 363


>gi|289667201|ref|ZP_06488276.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 1154

 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I + +     + LER+ +  D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRDLSELVPEARIGIAHGQMPERELERVML--DFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD+ G       L Q  GR  R+
Sbjct: 890 TIIINRADRFGL----AQLHQLRGRVGRS 914


>gi|258422918|ref|ZP_05685818.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
 gi|257846942|gb|EEV70956.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
          Length = 506

 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 336


>gi|257885669|ref|ZP_05665322.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,501]
 gi|294618523|ref|ZP_06698085.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1679]
 gi|257821525|gb|EEV48655.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,501]
 gi|291595223|gb|EFF26554.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1679]
          Length = 678

 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 91/197 (46%), Gaps = 29/197 (14%)

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELE-----QCQGIIVEQIIRPTGLVDPPVEIRSART- 566
           LR + W   RP  + ++ATP    L      +    I++++  P G +  P+E R  RT 
Sbjct: 395 LREKGW---RPDVLFMTATPIPRTLAITAYGEMDVSIIDEL--PAGRI--PIETRWVRTP 447

Query: 567 QVEDVYD--EINLAAQQGLRILLTVLTKRMAEDLTEY--LYER-------NIRVRYMHSE 615
           Q++ V D  +  LA    + ++  ++ +  A D+     +YE+          V  +H +
Sbjct: 448 QLDSVLDWTKKELARGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGK 507

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  E+  I+   +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  
Sbjct: 508 MKNQEKEVIMEAFKDNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLR 563

Query: 676 GRAARNVN-SKVILYAD 691
           GR  R  + S  IL A+
Sbjct: 564 GRVGRGSDASYCILVAN 580


>gi|239615016|gb|EEQ92003.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis ER-3]
 gi|327357154|gb|EGE86011.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 548

 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  ++V  ++  
Sbjct: 380 KVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVAS 439

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+ +  +  +L+ D   +  +    +  IGR  R
Sbjct: 440 RGIDVRD--ITHVLNYD---YPNNSEDYVHRIGRTGR 471


>gi|224088162|ref|XP_002308349.1| predicted protein [Populus trichocarpa]
 gi|222854325|gb|EEE91872.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L  +LY        +H +    ER   +R  + GK  +LV  ++   G
Sbjct: 315 LVFVETKKGADSLEHWLYVNKFPATSIHGDRSQQEREMALRSFKSGKTPILVATDVAARG 374

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDIP    V   D   +         +  IGR  R
Sbjct: 375 LDIPHVAHVVNFDLPND-----IDDYVHRIGRTGR 404


>gi|90408914|ref|ZP_01217050.1| putative ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
 gi|90309973|gb|EAS38122.1| putative ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
          Length = 431

 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 34/172 (19%)

Query: 525 TIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAA 579
           T++ SAT P     EQ Q +  E       L++ PVEI+     A T V+ V+  +N   
Sbjct: 199 TLLFSATFP-----EQVQALTQE-------LLNEPVEIQLQSADASTLVQRVFT-VNKGQ 245

Query: 580 QQGL-----------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +  L           + L+ V  KR  + L E L +R I     H       R  ++   
Sbjct: 246 KTALLAHLIKHHQWRQALIFVNAKRNCDHLAEKLSKRGITAEVFHGAKGQGARDRVLESF 305

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           + G+ +VL+  ++   GLDI +  +V   D       RS +  +  IGR+ R
Sbjct: 306 KAGEINVLIATDIAARGLDIEKLPVVINFD-----LPRSPSDYMHRIGRSGR 352


>gi|148230348|ref|NP_001079703.1| similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA
           helicase, 68kDa) [Xenopus laevis]
 gi|28838521|gb|AAH47981.1| MGC53795 protein [Xenopus laevis]
          Length = 607

 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  +DLT  L         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 339 KTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIATDVAS 398

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     +  S    I  IGR AR
Sbjct: 399 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTAR 430


>gi|28574962|ref|NP_648062.2| CG10077, isoform A [Drosophila melanogaster]
 gi|20976828|gb|AAM27489.1| GH10652p [Drosophila melanogaster]
 gi|28380590|gb|AAF50635.2| CG10077, isoform A [Drosophila melanogaster]
 gi|220947070|gb|ACL86078.1| CG10077-PA [synthetic construct]
 gi|220960420|gb|ACL92746.1| CG10077-PA [synthetic construct]
          Length = 818

 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 16/129 (12%)

Query: 567 QVEDVYDE-----------INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           Q+ DV DE            +++A+   + ++ V TK+  +++T  +  +  R   +H +
Sbjct: 378 QIVDVCDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGD 437

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
               ER  ++   R G+  +LV  ++   GLD+ +   V   D     +  +    +  I
Sbjct: 438 KSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYD-----YPSNSEDYVHRI 492

Query: 676 GRAARNVNS 684
           GR  R+ N+
Sbjct: 493 GRTGRSNNT 501


>gi|3986285|dbj|BAA34993.1| DjVLGA [Dugesia japonica]
          Length = 726

 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 11/111 (9%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           IL+ V TKR A+ L  +L+     V  +H +    +R   ++  R G   +LV   +   
Sbjct: 469 ILVFVETKRGADALEGFLHTEGSCVASIHGDRSQSDRELALQSFREGSTPILVATRVAAR 528

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYAD 691
           GLDIP    V   D   D E +       +  IGR  R  N+   +  Y D
Sbjct: 529 GLDIPNVKFVINYDLPTDIEEY-------VHRIGRTGRVGNLGEAISFYTD 572


>gi|86144457|ref|ZP_01062789.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
 gi|85837356|gb|EAQ55468.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
          Length = 523

 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 4/128 (3%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TK  A  L  +L E++I    +H       R + + + + GK  VLV  ++  
Sbjct: 245 QVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVATDIAA 304

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK--SIQLAI 701
            G+DIP+  L  +++ D           I   GRA     +  ++ AD + +   I+  I
Sbjct: 305 RGIDIPQ--LPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIERLI 362

Query: 702 DETTRRRE 709
            +   RRE
Sbjct: 363 QQVLERRE 370


>gi|46128439|ref|XP_388773.1| hypothetical protein FG08597.1 [Gibberella zeae PH-1]
          Length = 620

 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 38/72 (52%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L    G+R ++ V +++ A++L ++L+   + V  MHS+    ER   +R  R G   +L
Sbjct: 393 LEEMHGIRTIIFVNSRQSADNLDDFLFNMKLPVTSMHSDRTQQEREAAMRAFRSGNAPIL 452

Query: 637 VGINLLREGLDI 648
           +   +   G+D+
Sbjct: 453 IATGVTARGIDV 464


>gi|331089329|ref|ZP_08338230.1| hypothetical protein HMPREF1025_01813 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330405510|gb|EGG85042.1| hypothetical protein HMPREF1025_01813 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 712

 Score = 40.8 bits (94), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 105/245 (42%), Gaps = 33/245 (13%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---- 216
           + G  + +K+ LL G+ GSG  + +            V+  N+  A + Y E+  F    
Sbjct: 30  ISGCVNTQKIHLLSGI-GSGCGYKL------------VVFSNEEKAKKAYEEYLLFGEET 76

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           + + A +    Y D              I+ ++  N +++ +R  A +   E    ++ +
Sbjct: 77  YLYPARDLLFYYAD--------------IKGKTLTNRRMEVLRAIAEKKK-EEPVTVITT 121

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
             + + GI S +   +  + +   D+V+  +L   L    Y+R+      G F V G  I
Sbjct: 122 MDAFLDGIISPDEIQKNRIHITGEDTVDLTKLEQDLTALGYERESQIEAPGQFAVRGGII 181

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++FP   E++  R+ ++G++I+ I  F   + + I N+  I IY  S        L + +
Sbjct: 182 DVFPLA-EEMPVRIELWGDEIDSIRMFDAKSQRSIENISEITIYPASENCFGNNGLVSFL 240

Query: 397 KYIKE 401
           KY  E
Sbjct: 241 KYFPE 245


>gi|328957308|ref|YP_004374694.1| ATP-dependent DNA helicase RecG [Carnobacterium sp. 17-4]
 gi|328673632|gb|AEB29678.1| ATP-dependent DNA helicase RecG [Carnobacterium sp. 17-4]
          Length = 682

 Score = 40.8 bits (94), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 6/102 (5%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E LT Y  +R  +V  +H ++K+ ++  I+ + +  K  VLV   ++  G+++P    + 
Sbjct: 493 EKLTAYYGDR-FQVGLLHGKMKSADKENIMENFKEKKLQVLVSTTVIEVGVNVPNATTMI 551

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           I DAD+ G     + L Q  GR  R +  S  IL A+  T++
Sbjct: 552 IYDADRFGL----SQLHQLRGRVGRGDKESYCILVANPKTEN 589



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 560 EIRSARTQVEDV--YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T V  +  Y   N+  Q  L +   +L ++  E LTE      +R+  +    K
Sbjct: 286 DVGSGKTIVAAIALYAATNVGVQSALMVPTGILAEQHMESLTELFDPLEVRIALLTGSTK 345

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLV 654
           T ER  I+  L  G+ DVL+G + L+++ +     GLV
Sbjct: 346 TKERRIILEQLANGELDVLIGTHALIQQDVYFSRLGLV 383


>gi|258654637|ref|YP_003203793.1| transcription-repair coupling factor [Nakamurella multipartita DSM
           44233]
 gi|258557862|gb|ACV80804.1| transcription-repair coupling factor [Nakamurella multipartita DSM
           44233]
          Length = 1192

 Score = 40.8 bits (94), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           V L++G  V+  EL+  LV   Y R D+   RG   V G  ++IFP    D   RV  +G
Sbjct: 150 VTLRVGQEVDLTELVDRLVSLAYGRVDMVEKRGEIAVRGGILDIFPP-TADHPIRVEFWG 208

Query: 355 NDIEEISEF 363
           ++I ++  F
Sbjct: 209 DEISDLRTF 217


>gi|229548019|ref|ZP_04436744.1| primosomal replication protein n [Enterococcus faecalis ATCC 29200]
 gi|257091367|ref|ZP_05585728.1| primosomal protein n [Enterococcus faecalis CH188]
 gi|307276654|ref|ZP_07557772.1| primosomal protein [Enterococcus faecalis TX2134]
 gi|312905431|ref|ZP_07764545.1| primosomal protein [Enterococcus faecalis TX0635]
 gi|229306895|gb|EEN72891.1| primosomal replication protein n [Enterococcus faecalis ATCC 29200]
 gi|257000179|gb|EEU86699.1| primosomal protein n [Enterococcus faecalis CH188]
 gi|306506764|gb|EFM75916.1| primosomal protein [Enterococcus faecalis TX2134]
 gi|310631160|gb|EFQ14443.1| primosomal protein [Enterococcus faecalis TX0635]
 gi|315161199|gb|EFU05216.1| primosomal protein [Enterococcus faecalis TX0645]
 gi|315167225|gb|EFU11242.1| primosomal protein [Enterococcus faecalis TX1341]
 gi|315577115|gb|EFU89306.1| primosomal protein [Enterococcus faecalis TX0630]
          Length = 810

 Score = 40.8 bits (94), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I+R    G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 603 KILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVS 662

Query: 676 GRAAR 680
           GRA R
Sbjct: 663 GRAGR 667


>gi|269127644|ref|YP_003301014.1| ATP-dependent DNA helicase RecG [Thermomonospora curvata DSM 43183]
 gi|268312602|gb|ACY98976.1| ATP-dependent DNA helicase RecG [Thermomonospora curvata DSM 43183]
          Length = 736

 Score = 40.8 bits (94), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H ++   ++  ++R    G+ DVL+   ++  G+D+P   ++ I+DAD+ G  
Sbjct: 552 GLRIGVLHGKLPPDDKDAVMRRFAAGEIDVLLATTVVEVGVDVPNATVMVIMDADRFGV- 610

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R 
Sbjct: 611 ---SQLHQLRGRVGRG 623


>gi|163786687|ref|ZP_02181135.1| transcription-repair coupling factor [Flavobacteriales bacterium
           ALC-1]
 gi|159878547|gb|EDP72603.1| transcription-repair coupling factor [Flavobacteriales bacterium
           ALC-1]
          Length = 1096

 Score = 40.8 bits (94), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 105/236 (44%), Gaps = 30/236 (12%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G+ GS  +  +++  +  ++P +++  +K  AA   ++ +       V ++       
Sbjct: 19  LKGLVGSSFSIVISEAFKTAEKPFLLIFDDKEEAAYYLNDLEQLINDKDVLFY------- 71

Query: 233 QPEAYVPRTDTYIEKESSIN-----EQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGS 286
            P +Y  R    IE+ ++ N     E ++R+          +  C++V+    ++  + +
Sbjct: 72  -PGSY--RRPYQIEETNNANVLLRAEVLNRINS-------RKKPCVIVTYPDALFEKVVT 121

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            +   +  +++ +G+ +    +   L + ++KR D     G F V G  I++F S   D 
Sbjct: 122 KKELEKNTLKISVGNELSIDFVNEVLFEYKFKRVDFVTEPGEFSVRGGIIDVF-SFSHDE 180

Query: 347 AWRVSMFGNDIEEISEF---YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
            +R+  FG++++ I  F     L+ ++I+ V  I   AN      R +    +KYI
Sbjct: 181 PYRIEFFGDEVDSIRTFDVETQLSTERIKKVSIIPNVANKLIAEQRESF---LKYI 233



 Score = 37.7 bits (86), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 14/161 (8%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLT----VLTKRMAEDLTEYLYERNIRVRYMH 613
           P+E    R   E + D ++   Q+G ++          K +A  +   + +  I + +  
Sbjct: 725 PIESHVIRFAEETIRDAVSYEIQRGGQVFFIHNRIENIKEVAGMIQRLVPDAKIGIGHGQ 784

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            + K LE + +      G+FDVLV   ++  GLD+P    + I +A+  G     + L Q
Sbjct: 785 LDGKKLEHLML--SFMNGEFDVLVSTTIVESGLDVPNANTIFINNANNFGL----SDLHQ 838

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
             GR  R+ N K   Y  T   S   A+    R+R   LE 
Sbjct: 839 MRGRVGRS-NKKAFCYFITPEYS---AMTTDARKRITALEQ 875


>gi|157325275|ref|YP_001468697.1| gp58 [Listeria phage B025]
 gi|66733281|gb|AAY53098.1| gp58 [Listeria phage B025]
          Length = 380

 Score = 40.8 bits (94), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 7/148 (4%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G + +L   +   ++ +     +  I   ++  +    ER  II+  R G+  VL  ++L
Sbjct: 154 GQQAILYASSLYQSQKMAASFEQVGITAAHIDGKTPKAERDHIIQQFRNGEIKVLCNLDL 213

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           + EG D+P+C  V +L        +S +  IQ   R  R    K  +  D +    +  +
Sbjct: 214 IGEGFDVPDCSTVIMLRP-----TQSLSLYIQQSMRGMRYRTGKTAIIIDHVGNVNRFGL 268

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKI 729
            +  R+    LE  K  N N      KI
Sbjct: 269 PDMERKWS--LEAKKGSNSNKAEAPVKI 294


>gi|24378965|ref|NP_720920.1| primosome assembly protein PriA [Streptococcus mutans UA159]
 gi|24376854|gb|AAN58226.1|AE014894_3 primosomal replication factor Y (primosomal protein N')
           [Streptococcus mutans UA159]
          Length = 794

 Score = 40.8 bits (94), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPN 202
           D +P  +Q  A+ Q+   I S  K  LL G+TGSGKT     VI+    + + AIV+ P 
Sbjct: 257 DLNP--EQQTAVEQITAAIGSSNKPYLLEGITGSGKTEVYLHVIDQTLKLGKTAIVLVPE 314

Query: 203 KILAAQLYSEFKNFF 217
             L  Q+ S F + F
Sbjct: 315 ISLTPQMTSRFISRF 329


>gi|78048574|ref|YP_364749.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037004|emb|CAJ24723.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 1154

 Score = 40.8 bits (94), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I + +     + LER+ +  D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRDLSELVPEARIGIAHGQMPERELERVML--DFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD+ G       L Q  GR  R+
Sbjct: 890 TIIINRADRFGL----AQLHQLRGRVGRS 914


>gi|193066296|ref|ZP_03047347.1| transcription-repair coupling factor [Escherichia coli E22]
 gi|194429791|ref|ZP_03062305.1| transcription-repair coupling factor [Escherichia coli B171]
 gi|260843354|ref|YP_003221132.1| transcription-repair coupling factor Mfd [Escherichia coli O103:H2
           str. 12009]
 gi|192926068|gb|EDV80711.1| transcription-repair coupling factor [Escherichia coli E22]
 gi|194412138|gb|EDX28446.1| transcription-repair coupling factor [Escherichia coli B171]
 gi|257758501|dbj|BAI29998.1| transcription-repair coupling factor Mfd [Escherichia coli O103:H2
           str. 12009]
 gi|323163658|gb|EFZ49480.1| transcription-repair coupling factor [Escherichia coli E128010]
          Length = 1148

 Score = 40.8 bits (94), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE   +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEATNLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +           + E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DIFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|326383298|ref|ZP_08204986.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326198048|gb|EGD55234.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 526

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR A+ + + L ER   V  +H ++  + R + +   R GK DVLV  ++   G+D+ +
Sbjct: 295 TKRTAQKVADDLAERGFSVGAVHGDLGQVAREKALNKFREGKIDVLVATDVAARGIDVDD 354

Query: 651 C 651
            
Sbjct: 355 V 355


>gi|325279096|ref|YP_004251638.1| primosomal protein N' [Odoribacter splanchnicus DSM 20712]
 gi|324310905|gb|ADY31458.1| primosomal protein N' [Odoribacter splanchnicus DSM 20712]
          Length = 810

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 9/108 (8%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           +I D   GK D+L+G  ++ +GLD     LV ++DAD            R    L+Q  G
Sbjct: 605 VIEDFEQGKTDILIGTQMVTKGLDFANVKLVGVIDADSMVNFPDFRAEERVYCMLMQVSG 664

Query: 677 RAARNVNSK--VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
           R+ R  +    VI  AD   +   +  D   R   +QL   ++  + P
Sbjct: 665 RSGRKGDRGKVVIQAADVKNRVYTMLTDGNYRTFFEQLAAERELFVYP 712


>gi|302333727|gb|ADL23920.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 506

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 336


>gi|325678530|ref|ZP_08158141.1| transcription-repair coupling factor [Ruminococcus albus 8]
 gi|324109749|gb|EGC03954.1| transcription-repair coupling factor [Ruminococcus albus 8]
          Length = 1153

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H +++  E  EI R +   + D+LV   L+  G+D+P    + I DAD+ G  
Sbjct: 847 DARIGYAHGQMEEKELSEIWRQVVEHEIDILVCTTLIETGIDVPNVNTLIIEDADRLGL- 905

Query: 666 RSKTSLIQTIGRAARNVNSKVILY 689
              + L Q  GR  R+ N +   Y
Sbjct: 906 ---SQLHQLRGRVGRS-NRRAFAY 925



 Score = 37.7 bits (86), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 44/228 (19%), Positives = 97/228 (42%), Gaps = 17/228 (7%)

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQMIVQL 297
           P  D        I+ + +  R  A  +++     I+ +S+ +C+ G     +  +    +
Sbjct: 81  PAKDMNFAYMEGISREYEHRRIEALSAIMSGRCRIMAASMEACLQGTIPPSALKEYTFTI 140

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           + G  ++ +EL   L+   Y R D       F V G  I+IFP   +    R+ ++G+++
Sbjct: 141 ENGSEIDTEELQRKLLAAGYTRTDQVEGAAQFAVRGSIIDIFPVQ-DKQPVRIELWGDEV 199

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           + ++ F   + ++  ++E+I I      + P           +EEL  R+    K  R  
Sbjct: 200 DTMAYFDTESQRRNESLESITIAPALEIIFPS----------EEELISRMEAAAKAARGK 249

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
              ++ + I  D++++ +  +  +++ Y  Y    N      T+F+Y 
Sbjct: 250 LIDKIRENIQKDIDLINSGITLTNLDKY--YTLAYN---ETATVFDYF 292


>gi|261188002|ref|XP_002620418.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis SLH14081]
 gi|239593429|gb|EEQ76010.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis SLH14081]
          Length = 548

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  ++V  ++  
Sbjct: 380 KVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVAS 439

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+ +  +  +L+ D   +  +    +  IGR  R
Sbjct: 440 RGIDVRD--ITHVLNYD---YPNNSEDYVHRIGRTGR 471


>gi|256086569|ref|XP_002579470.1| hypothetical protein [Schistosoma mansoni]
 gi|238664906|emb|CAZ35709.1| expressed protein [Schistosoma mansoni]
          Length = 1357

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           +N R+   HS +   ++I ++   R G ++ LV   +  EG+D+ +  L+   DA K   
Sbjct: 562 KNSRLSNAHSGISQRDQIRVMDGFRSGVYNTLVSTCIGEEGIDVGQVDLIVCFDASK--- 618

Query: 665 LRSKTSLIQTIGRAARNVNSKVIL 688
             S   L+Q  GR  R    ++++
Sbjct: 619 --SPIQLMQRQGRTGRKRLGRIVV 640


>gi|323341495|ref|ZP_08081736.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
 gi|323091106|gb|EFZ33737.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
          Length = 446

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   +DLT YL  + +RV  +H  +   ER   +R+++  ++  +V  +L   G+DI  
Sbjct: 253 TKERVDDLTRYLRSQGLRVAKIHGGIPPRERKRTMREIQNMEYQFVVATDLAARGIDIE- 311

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNV--NSKVILYADTITKSI 697
            G+  +++ D    L      I  +GR  RN    + + LYA +  K I
Sbjct: 312 -GVSQVINDDIPEDLE---FFIHRVGRTGRNGMEGTAITLYAPSEDKMI 356


>gi|215741236|dbj|BAG97731.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 478

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L  +LY +      +H +    ER   +R  + G   ++V  ++   G
Sbjct: 231 LVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRG 290

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LD+P    V   D  K     S    +  IGR  R
Sbjct: 291 LDVPNVAHVINYDLPK-----SIEDYVHRIGRTGR 320


>gi|212696071|ref|ZP_03304199.1| hypothetical protein ANHYDRO_00607 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676700|gb|EEB36307.1| hypothetical protein ANHYDRO_00607 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 439

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 596 EDLTEYLYER------NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           E+  E LY+R      + R+  +H ++K  E+  I+++   GK DVL+   ++  G+D+ 
Sbjct: 249 ENSVENLYKRYKTKFTDKRIEKLHGKLKADEKENILKEFSDGKIDVLISTTVIEVGIDVS 308

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
               + I +A+  G     +SL Q  GR  R
Sbjct: 309 NANCMVIYNANNFGL----SSLHQLRGRIGR 335


>gi|208780398|ref|ZP_03247739.1| type III restriction enzyme, res subunit family [Francisella
           novicida FTG]
 gi|208743766|gb|EDZ90069.1| type III restriction enzyme, res subunit family [Francisella
           novicida FTG]
          Length = 679

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 8/107 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            K + ++L E L + N+ + Y    +K+ ++IE +   +  K+ VLV   ++  G+D+P 
Sbjct: 490 VKTLYQELLEALGKENVGLVY--GSMKSKDKIEQMAAFKAKKYAVLVATTVIEVGVDVPN 547

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
             ++ I +A++ G     + L Q  GR  R       ++LY+D I++
Sbjct: 548 ATIMIIDNAERLGI----SQLHQLRGRVGRGAKESYCILLYSDKISE 590


>gi|167970005|ref|ZP_02552282.1| ATP-dependent DNA helicase recG [Mycobacterium tuberculosis H37Ra]
          Length = 1293

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 607  IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
            +R+  MH  +   ++   +   R G+ DVLV   ++  G+D+P   ++ ++DAD+ G   
Sbjct: 1114 LRLALMHGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGI-- 1171

Query: 667  SKTSLIQTIGRAARNVNSKVILYADTI 693
              + L Q  GR  R  +  V L A  +
Sbjct: 1172 --SQLHQLRGRIGRGEHPSVCLLASWV 1196


>gi|120564784|gb|ABM30181.1| VASA3n [Paragonimus westermani]
          Length = 606

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 4/112 (3%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           ++  G+  L+ V TKR A+ L +YL+ +   V  +H +    +R   +   R G+  +LV
Sbjct: 385 SSDPGVLTLVFVETKRGADSLEDYLFSQKFHVASIHGDRTQDDRELALPCFRNGRTPILV 444

Query: 638 GINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
              +   GLDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 445 ATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGIATSFFNDK 496


>gi|327183827|gb|AEA32274.1| ATP-dependent DNA helicase RecG [Lactobacillus amylovorus GRL 1118]
          Length = 678

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 17/187 (9%)

Query: 523 PTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           P  + ++ATP   +  L     + V +I        P +      +Q++DVY  +     
Sbjct: 404 PDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISAWKTSSQMKDVYKLMYEQLD 463

Query: 581 QGLRI-----LLT---VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRL 630
           QG +I     L+T    L  + AE+L E L     +  V  +H ++   ++ EI+     
Sbjct: 464 QGFQIYAVTPLITESETLDLKNAEELHEKLSHDFPDQNVVLLHGQMPGAKKDEIMSAFAS 523

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILY 689
           G+ ++LV  +++  G+D+    ++ I +AD+ G     + L Q  GR  R    S  I  
Sbjct: 524 GEINILVTTSVIEVGVDVANANMMVIYNADRFGL----SQLHQLRGRIGRGQTQSYCIFI 579

Query: 690 ADTITKS 696
           AD  T S
Sbjct: 580 ADPKTDS 586


>gi|315038623|ref|YP_004032191.1| ATP-dependent DNA helicase RecG [Lactobacillus amylovorus GRL 1112]
 gi|312276756|gb|ADQ59396.1| ATP-dependent DNA helicase RecG [Lactobacillus amylovorus GRL 1112]
          Length = 678

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 17/187 (9%)

Query: 523 PTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           P  + ++ATP   +  L     + V +I        P +      +Q++DVY  +     
Sbjct: 404 PDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISAWKTSSQMKDVYKLMYEQLD 463

Query: 581 QGLRI-----LLT---VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRL 630
           QG +I     L+T    L  + AE+L E L     +  V  +H ++   ++ EI+     
Sbjct: 464 QGFQIYAVTPLITESETLDLKNAEELHEKLSHDFPDQNVVLLHGQMPGAKKDEIMSAFAS 523

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILY 689
           G+ ++LV  +++  G+D+    ++ I +AD+ G     + L Q  GR  R    S  I  
Sbjct: 524 GEINILVTTSVIEVGVDVANANMMVIYNADRFGL----SQLHQLRGRIGRGQTQSYCIFI 579

Query: 690 ADTITKS 696
           AD  T S
Sbjct: 580 ADPKTDS 586


>gi|295397807|ref|ZP_06807872.1| DNA replication factor Y [Aerococcus viridans ATCC 11563]
 gi|294973942|gb|EFG49704.1| DNA replication factor Y [Aerococcus viridans ATCC 11563]
          Length = 811

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 15/88 (17%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIG 676
           I++ +   K D+L+G  ++ +GLD P   LV I++AD   +L       R+   L Q  G
Sbjct: 605 ILKQIADKKADILLGTQMIAKGLDFPNITLVGIINADTTLYLPDFRAAERTFQLLTQMSG 664

Query: 677 RAAR-NVNSKVIL-------YADTITKS 696
           RA R +++ +V++       YA T+ K+
Sbjct: 665 RAGRGDLDGQVLIQTYNPDHYALTLAKN 692


>gi|293556809|ref|ZP_06675370.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1039]
 gi|291600893|gb|EFF31184.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1039]
          Length = 678

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 91/197 (46%), Gaps = 29/197 (14%)

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELE-----QCQGIIVEQIIRPTGLVDPPVEIRSART- 566
           LR + W   RP  + ++ATP    L      +    I++++  P G +  P+E R  RT 
Sbjct: 395 LREKGW---RPDVLFMTATPIPRTLAITAYGEMDVSIIDEL--PAGRI--PIETRWVRTP 447

Query: 567 QVEDVYD--EINLAAQQGLRILLTVLTKRMAEDLTEY--LYER-------NIRVRYMHSE 615
           Q++ V D  +  LA    + ++  ++ +  A D+     +YE+          V  +H +
Sbjct: 448 QLDSVLDWTKKELARGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGK 507

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  E+  I+   +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  
Sbjct: 508 MKNQEKEVIMEAFKDNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLR 563

Query: 676 GRAARNVN-SKVILYAD 691
           GR  R  + S  IL A+
Sbjct: 564 GRVGRGSDASYCILVAN 580


>gi|282917430|ref|ZP_06325183.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus D139]
 gi|282318632|gb|EFB48989.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus D139]
          Length = 506

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 336


>gi|255531453|ref|YP_003091825.1| primosomal protein N' [Pedobacter heparinus DSM 2366]
 gi|255344437|gb|ACU03763.1| primosomal protein N' [Pedobacter heparinus DSM 2366]
          Length = 824

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           ++I D +  K D+L+G  ++ +GLD     L+ +++AD          F RS   L Q  
Sbjct: 618 QLISDFQEKKTDILIGTQMVAKGLDFDNVTLIGVINADTLLNYPDFRAFERSYQLLAQVA 677

Query: 676 GRAA-RNVNSKVILYA 690
           GRA  R+   KVI+ A
Sbjct: 678 GRAGRRDKQGKVIIQA 693


>gi|262201927|ref|YP_003273135.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262085274|gb|ACY21242.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 597

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 18/167 (10%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  E+L E L  R      ++ ++   +R   I  L+ G  D+LV  ++   
Sbjct: 264 MIVFVRTKQATEELAEKLRSRGFSAVAINGDMAQAQRERTINQLKSGGIDILVATDVAAR 323

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  N+  +L+     + +  +I+
Sbjct: 324 GLDVDRISHVVNYDIPHDTESYVHR----IGRTGRAGRAGNA--LLFVSPRERHLLRSIE 377

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
             TR    ++      ++N Q V              D+ T N+S D
Sbjct: 378 RATRSTLTEIGLPSVEDVNAQRVAR----------FADSITENLSSD 414


>gi|217968880|ref|YP_002354114.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|217506207|gb|ACK53218.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 441

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR A++L+  L E+ I    +H ++   +R   +  LR G+  VLV  ++   G+D+  
Sbjct: 254 TKRSADELSLALQEKGISAAALHGDMHQTQRNRTLDRLRQGRIGVLVATDVAARGIDV-- 311

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  +++ D     R     +  IGR  R
Sbjct: 312 AGISHVINFDPP---RQAEDYVHRIGRTGR 338


>gi|289209652|ref|YP_003461718.1| type III restriction protein res subunit [Thioalkalivibrio sp.
           K90mix]
 gi|288945283|gb|ADC72982.1| type III restriction protein res subunit [Thioalkalivibrio sp.
           K90mix]
          Length = 1066

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 5/98 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           +R L   +++  A  + EY   + +    +  +    ER  I RDLR G+   +  ++L 
Sbjct: 578 VRGLGFCISRAHARFMAEYFSAKQVPSAVLTGDSSDHERKSIQRDLREGRIRFIFTVDLY 637

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            EG+D+PE   V +L   +     S T  +Q +GR  R
Sbjct: 638 NEGVDLPEVDTVLLLRPTE-----SLTVYLQQMGRGLR 670


>gi|224052027|ref|XP_002200489.1| PREDICTED: similar to Fanconi anemia, complementation group M
           [Taeniopygia guttata]
          Length = 1598

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 16/112 (14%)

Query: 573 DEINLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYM----HSEVKTL------ER 621
           DE   A   G  R+++    +   +++ E L   +  VR M    HS  K+       E+
Sbjct: 437 DEEKSAGSAGDTRVMIFSSFRDSVQEIAEMLARLSPAVRAMTFVGHSSGKSTKGFTQKEQ 496

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +E++R  R G ++ LV   +  EGLDI E  L+   DA      RS   L+Q
Sbjct: 497 LEVVRRFREGGYNTLVSTCVGEEGLDIGEVDLIVCFDAQ-----RSPVRLVQ 543


>gi|172040746|ref|YP_001800460.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum
           DSM 7109]
 gi|171852050|emb|CAQ05026.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum
           DSM 7109]
          Length = 430

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R++  V T        +YL    I+V  +H       R   + D R GK  VLV  ++  
Sbjct: 294 RVIFFVRTTHAVTRWAKYLSAGGIKVSALHGNRGHQSRQRALADFREGKVRVLVATDIAA 353

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            G+D+P  G+ A++  D     R   +L+   GR  R   S  +
Sbjct: 354 RGIDVP--GVQAVVHIDPP---RDPKALVHRSGRTGRAGASGTV 392


>gi|188990859|ref|YP_001902869.1| Transcription-repair coupling factor (TRCF). [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167732619|emb|CAP50813.1| Transcription-repair coupling factor (TRCF) [Xanthomonas campestris
           pv. campestris]
          Length = 1156

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I + +     + LER+ +  D +  +F+VL+   ++  G+DIP   
Sbjct: 834 RMQRDLSELVPEARIGIAHGQMPERELERVML--DFQKQRFNVLLSTTIIESGIDIPNAN 891

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD+ G       L Q  GR  R+
Sbjct: 892 TIIINRADRFGL----AQLHQLRGRVGRS 916


>gi|66046145|ref|YP_235986.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. syringae
           B728a]
 gi|63256852|gb|AAY37948.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. syringae
           B728a]
          Length = 1473

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 8/118 (6%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E  L  ++G  ++  V +++ AE+L ++L       +Y H+ ++  E+ +I    + G+ 
Sbjct: 285 EEELGTREGGAVIF-VSSRKGAEELADFLIGHGWACKYFHAGLEPHEKKDIQDAFKGGEL 343

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILY 689
            ++V  N    G+D P+  LV  + AD  G L    + +Q  GRA R+      V+LY
Sbjct: 344 KIIVATNAFGMGVDKPDIRLV--IHADIPGSLE---NYLQEAGRAGRDQGQARCVLLY 396


>gi|33240450|ref|NP_875392.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33237978|gb|AAQ00045.1| Transcription-repair coupling factor [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 1170

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 91/213 (42%), Gaps = 27/213 (12%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF----VSYYD 230
           G + S K  T++ +     +P +V+ P  +  A  ++        N V  +    VS Y+
Sbjct: 33  GGSTSAKAITISSLALKSNKPVLVIVPT-LEEASRWNSIMQILGWNKVLLYPSSEVSPYE 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSL---LERNDCIVVSSVSCIYGIGS 286
             +    +      +  E   N+  D M    T R+L   L R + ++ +SVS I G   
Sbjct: 92  SIEISKEIEWAQLSVLSELLANDYRDPMAIICTERALQPHLPRPELMLENSVSIIKG--- 148

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                         + +    L  +L+K  Y++       GT+   GD I+IF  + E +
Sbjct: 149 --------------NELNLDNLSRNLIKIGYEKTTTTEQEGTWSRRGDIIDIFAVNNE-L 193

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             R+ +FG++I++I EF P+  + +  +  I+I
Sbjct: 194 PIRIELFGDNIDKIREFDPINQRSLDEINNIRI 226


>gi|47215263|emb|CAF96990.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 383

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 41/69 (59%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+R AE LT+ L  ++  V  +H E++  ER  ++++ R G   VL+  +LL  G
Sbjct: 253 VIFVNTRRKAEWLTQRLKSQDFTVSLLHGEMEQNERNLVMKEFRSGSSRVLITTDLLARG 312

Query: 646 LDIPECGLV 654
           +D+ +  +V
Sbjct: 313 IDVQQVSMV 321


>gi|69249786|ref|ZP_00605048.1| ATP-dependent DNA helicase RecG [Enterococcus faecium DO]
 gi|257878761|ref|ZP_05658414.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,230,933]
 gi|257881402|ref|ZP_05661055.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,502]
 gi|257890619|ref|ZP_05670272.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,410]
 gi|258615172|ref|ZP_05712942.1| ATP-dependent DNA helicase RecG [Enterococcus faecium DO]
 gi|293562982|ref|ZP_06677449.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1162]
 gi|294622007|ref|ZP_06701151.1| ATP-dependent DNA helicase RecG [Enterococcus faecium U0317]
 gi|314937645|ref|ZP_07844971.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133a04]
 gi|314942856|ref|ZP_07849669.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133C]
 gi|314948008|ref|ZP_07851412.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0082]
 gi|314950926|ref|ZP_07853995.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133A]
 gi|314991426|ref|ZP_07856903.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133B]
 gi|314995053|ref|ZP_07860173.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133a01]
 gi|68194075|gb|EAN08620.1| ATP-dependent DNA helicase RecG [Enterococcus faecium DO]
 gi|257812989|gb|EEV41747.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,230,933]
 gi|257817060|gb|EEV44388.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,502]
 gi|257826979|gb|EEV53605.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,410]
 gi|291598434|gb|EFF29507.1| ATP-dependent DNA helicase RecG [Enterococcus faecium U0317]
 gi|291605108|gb|EFF34575.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1162]
 gi|313590779|gb|EFR69624.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133a01]
 gi|313593906|gb|EFR72751.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133B]
 gi|313596935|gb|EFR75780.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133A]
 gi|313598328|gb|EFR77173.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133C]
 gi|313643022|gb|EFS07602.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0133a04]
 gi|313645606|gb|EFS10186.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TX0082]
          Length = 678

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 91/197 (46%), Gaps = 29/197 (14%)

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELE-----QCQGIIVEQIIRPTGLVDPPVEIRSART- 566
           LR + W   RP  + ++ATP    L      +    I++++  P G +  P+E R  RT 
Sbjct: 395 LREKGW---RPDVLFMTATPIPRTLAITAYGEMDVSIIDEL--PAGRI--PIETRWVRTP 447

Query: 567 QVEDVYD--EINLAAQQGLRILLTVLTKRMAEDLTEY--LYER-------NIRVRYMHSE 615
           Q++ V D  +  LA    + ++  ++ +  A D+     +YE+          V  +H +
Sbjct: 448 QLDSVLDWTKKELARGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGK 507

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  E+  I+   +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  
Sbjct: 508 MKNQEKEVIMEAFKDNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLR 563

Query: 676 GRAARNVN-SKVILYAD 691
           GR  R  + S  IL A+
Sbjct: 564 GRVGRGSDASYCILVAN 580


>gi|326665839|ref|XP_003198128.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like [Danio
           rerio]
          Length = 688

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+  +I   R G  ++L+  ++  EGLDIPEC LV      + G L ++ +  Q  GR A
Sbjct: 428 EQKSVISHFRQGYLNLLISTSVAEEGLDIPECNLVV-----RYGLLTNEIAQQQASGR-A 481

Query: 680 RNVNSKVILYADTITKSIQ 698
           R  NS   + AD   + ++
Sbjct: 482 RASNSVYSVVADVGGREVR 500


>gi|323475246|gb|ADX85852.1| SSL2, DNA or RNA helicase, superfamily II [Sulfolobus islandicus
           REY15A]
          Length = 469

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 11/93 (11%)

Query: 599 TEYLYERNI------RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           T Y +E+ I      +V+ +  +    ER++I++ +R G  DV++   +  EG+DIPE  
Sbjct: 306 TAYKFEKAISDLAKGKVKVLTGDSSRYERLKIVQSVRKGDIDVIISTLVGEEGIDIPEAK 365

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           L+ + D       +S     Q +GR  R   SK
Sbjct: 366 LLIMTDVP-----QSPLRFYQRLGRLIRGKESK 393


>gi|312865767|ref|ZP_07725989.1| transcription-repair coupling factor [Streptococcus downei F0415]
 gi|311098642|gb|EFQ56864.1| transcription-repair coupling factor [Streptococcus downei F0415]
          Length = 1169

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R A +L E + E NI V  +H ++  ++    + D   G +DVLV   ++  G+D+P   
Sbjct: 838 RKAMELQELVPEANIGV--VHGQMSEIQLENTLFDFLDGVYDVLVATTIIETGIDMPNVN 895

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            + + +AD+ G     ++L Q  GR  R   S  I YA
Sbjct: 896 TLFVENADQMGL----STLYQLRGRVGR---SNRIAYA 926



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/209 (17%), Positives = 88/209 (42%), Gaps = 12/209 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G++G+ K+  +A    A Q   +++  ++  A  L  +       + V  F +  D
Sbjct: 28  QLVMGLSGASKSLAIAGNFLANQGKLVILTASQNEAENLAGDLVGLLGDDQVYQFFAD-D 86

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
               E  V   +  + +  S+N  +D  +             +V S +     + + + Y
Sbjct: 87  IVGAEFIVASQEKSLSRVESLNFLLDETKSG----------VLVTSLLGARVLLPNPKDY 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +  ++   +    +   L  +L    YK+    +  G F   GD ++I+     D A+ +
Sbjct: 137 ASFVLSFTVSQDYDLTSLAKTLTSLGYKKVSQVLSPGEFSQRGDILDIYDGR-TDQAYCL 195

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             FG++++ +  F P + + + N+++  +
Sbjct: 196 EFFGDELDGLRIFDPESQKSLENLDSFTL 224


>gi|306826760|ref|ZP_07460062.1| DNA helicase RecG [Streptococcus pyogenes ATCC 10782]
 gi|304431049|gb|EFM34056.1| DNA helicase RecG [Streptococcus pyogenes ATCC 10782]
          Length = 671

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L+ Y +E   +V  +H  +K  E+  I++D +  K  +LV   ++  G+++P   ++ I
Sbjct: 487 ELSTY-FEGIAKVALVHGRMKNDEKDAIMQDFKDKKSHILVSTTVIEVGVNVPNATIMII 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           +DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGHKQSYAVLVANPKTDS 582


>gi|297518235|ref|ZP_06936621.1| transcription-repair coupling factor [Escherichia coli OP50]
          Length = 542

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 231 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282


>gi|296194573|ref|XP_002745045.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Callithrix jacchus]
          Length = 724

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 542 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRSGKCPVLVATSVAA 601

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 602 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 645


>gi|294664095|ref|ZP_06729492.1| transcription-repair coupling factor [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292606135|gb|EFF49389.1| transcription-repair coupling factor [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1154

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I + +     + LER+ +  D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRDLSELVPEARIGIAHGQMPERELERVML--DFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD+ G       L Q  GR  R+
Sbjct: 890 TIIINRADRFGL----AQLHQLRGRVGRS 914


>gi|294909743|ref|XP_002777840.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239885802|gb|EER09635.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 625

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 2/108 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+   TKR A+D+T  L         +H + K  ER  ++ + + G+  +++  ++  
Sbjct: 430 KALIFTDTKRCADDITRVLRRDGWPALAIHGDKKQTERDWVLAEFKTGRMPIMIATDVAS 489

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
            GLD+ +   V  ++ D  G +      I   GRA  +  +     AD
Sbjct: 490 RGLDVKDVKYV--INYDFPGTIEDYVHRIGRTGRAGAHGTAYSFFTAD 535


>gi|254564599|ref|XP_002489410.1| Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family
           [Pichia pastoris GS115]
 gi|238029206|emb|CAY67127.1| Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family
           [Pichia pastoris GS115]
          Length = 482

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 3/97 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V  K  A  L + + +    V  +H ++++ ER  +I D R G+  VL+  N+L  G
Sbjct: 334 IIFVQRKETANMLYKRMKDEGHTVSILHGDLESSERDRLIDDFREGRSKVLITTNVLARG 393

Query: 646 LDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
           +DI    +V   D   D++G     T L   IGR  R
Sbjct: 394 IDIASVSMVVNYDLPVDRQGNADPSTYL-HRIGRTGR 429


>gi|218676102|ref|YP_002394921.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218324370|emb|CAV25741.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 523

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 4/128 (3%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TK  A  L  +L E++I    +H       R + + + + GK  VLV  ++  
Sbjct: 245 QVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVATDIAA 304

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK--SIQLAI 701
            G+DIP+  L  +++ D           I   GRA     +  ++ AD + +   I+  I
Sbjct: 305 RGIDIPQ--LPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIERLI 362

Query: 702 DETTRRRE 709
            +   RRE
Sbjct: 363 QQVLERRE 370


>gi|168052555|ref|XP_001778715.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669930|gb|EDQ56508.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 579

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            QQ L  L+ V TK+ A+ L ++L         +H +    ER   +R  R G   +LV 
Sbjct: 387 GQQTL-TLVFVETKKGADSLEDWLCRMGFPATTIHGDRSQQEREHALRSFRTGVTPILVA 445

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
            ++   GLDIP    V   D   +         +  IGR  R   S V
Sbjct: 446 TDVAARGLDIPHVAHVVNFDLPSD-----IDDYVHRIGRTGRAGKSGV 488


>gi|149908557|ref|ZP_01897219.1| RecG-like helicase [Moritella sp. PE36]
 gi|149808391|gb|EDM68328.1| RecG-like helicase [Moritella sp. PE36]
          Length = 690

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 13/125 (10%)

Query: 589 VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           VL  + AED    L ++  ++R+  +H  +K++E+  ++   +  + D+LV   ++  G+
Sbjct: 495 VLEAQAAEDTANDLQKQLPDLRIGLVHGRMKSIEKQYVMDAFKTKQLDLLVATTVIEVGV 554

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILY----ADTITKSIQLA 700
           D+P   L+ I + ++ G       L Q  GR  R    +  V+LY    +DT +K + + 
Sbjct: 555 DVPNASLMIIENPERLGL----AQLHQLRGRVGRGKVASHCVLLYHAPLSDTGSKRLSV- 609

Query: 701 IDETT 705
           + ETT
Sbjct: 610 LRETT 614


>gi|91794823|ref|YP_564474.1| ATP-dependent DNA helicase RecG [Shewanella denitrificans OS217]
 gi|91716825|gb|ABE56751.1| ATP-dependent DNA helicase RecG [Shewanella denitrificans OS217]
          Length = 691

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 6/85 (7%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           ++V  +H  +K+ ++  ++   ++G+ D+LV   ++  G+D+P   L+ I + ++ G   
Sbjct: 516 LKVGLVHGRMKSADKQAVMAQFKMGELDLLVATTVIEVGVDVPNASLMVIENPERLGL-- 573

Query: 667 SKTSLIQTIGRAARNVNSK--VILY 689
               L Q  GR  R   +   V+LY
Sbjct: 574 --AQLHQLRGRVGRGAIASHCVLLY 596


>gi|50914858|ref|YP_060830.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS10394]
 gi|50903932|gb|AAT87647.1| ATP-dependent DNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 671

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L+ Y +E   +V  +H  +K  E+  I++D +  K  +LV   ++  G+++P   ++ I
Sbjct: 487 ELSTY-FEGIAKVALVHGRMKNDEKDAIMQDFKDKKSHILVSTTVIEVGVNVPNATIMII 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           +DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGHKQSYAVLVANPKTDS 582


>gi|325922308|ref|ZP_08184088.1| transcription-repair coupling factor Mfd [Xanthomonas gardneri ATCC
           19865]
 gi|325547213|gb|EGD18287.1| transcription-repair coupling factor Mfd [Xanthomonas gardneri ATCC
           19865]
          Length = 1156

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I + +     + LER+ +  D +  +F+VL+   ++  G+DIP   
Sbjct: 834 RMQRDLSELVPEARIGIAHGQMPERELERVML--DFQKQRFNVLLSTTIIESGIDIPNAN 891

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD+ G       L Q  GR  R+
Sbjct: 892 TIIINRADRFGL----AQLHQLRGRVGRS 916


>gi|325957866|ref|YP_004289332.1| helicase domain-containing protein [Methanobacterium sp. AL-21]
 gi|325329298|gb|ADZ08360.1| helicase domain protein [Methanobacterium sp. AL-21]
          Length = 769

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 15/103 (14%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EII+  + G++DVL+  ++  EG+DIP   LV + +      + S+  +IQ  GR  R  
Sbjct: 427 EIIKSFKNGEYDVLISTSVAEEGIDIPSVDLVVLYEP-----VPSEIRMIQRRGRTGRKN 481

Query: 683 NSKVILYADTITKSIQLAIDE----TTRRREKQLEHNKKHNIN 721
             ++ +    ITK  +   DE    ++  +EKQ++     N N
Sbjct: 482 RGRMFIL---ITKGTR---DESYYWSSINKEKQMKKQLNKNFN 518


>gi|298243695|ref|ZP_06967502.1| excinuclease ABC, C subunit [Ktedonobacter racemifer DSM 44963]
 gi|297556749|gb|EFH90613.1| excinuclease ABC, C subunit [Ktedonobacter racemifer DSM 44963]
          Length = 690

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/28 (67%), Positives = 24/28 (85%)

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIK 791
           LK L+++M  AA++LNFEEAARIRD IK
Sbjct: 222 LKDLQRRMEEAAESLNFEEAARIRDRIK 249


>gi|258515529|ref|YP_003191751.1| primosomal protein N' [Desulfotomaculum acetoxidans DSM 771]
 gi|257779234|gb|ACV63128.1| primosomal protein N' [Desulfotomaculum acetoxidans DSM 771]
          Length = 747

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           EI+++   GK D+L+G  +L +GL++P   LV +++AD    +       ++   L Q  
Sbjct: 535 EILKNFLDGKADILIGTQMLAKGLNLPNVTLVGVINADTTLHMPDFRAAEKTFQLLTQVA 594

Query: 676 GRAARN 681
           GRA R 
Sbjct: 595 GRAGRG 600


>gi|255037131|ref|YP_003087752.1| primosomal protein N' [Dyadobacter fermentans DSM 18053]
 gi|254949887|gb|ACT94587.1| primosomal protein N' [Dyadobacter fermentans DSM 18053]
          Length = 831

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D   G  D+LVG  ++ +GLD     +V I DAD+           R+   L Q  
Sbjct: 622 QIISDFEEGGIDILVGTQMVSKGLDFDNVSVVGIFDADRIIHFPEFRASERAFQMLTQVS 681

Query: 676 GRAARNVN 683
           GRA R  +
Sbjct: 682 GRAGRRAD 689


>gi|227893319|ref|ZP_04011124.1| DNA helicase RecG [Lactobacillus ultunensis DSM 16047]
 gi|227864899|gb|EEJ72320.1| DNA helicase RecG [Lactobacillus ultunensis DSM 16047]
          Length = 681

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 86/188 (45%), Gaps = 17/188 (9%)

Query: 522 RPTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           RP  + ++ATP   +  L     + V +I        P +      +Q+++VY  ++   
Sbjct: 406 RPDILAMTATPIPRTLALTVYGDMTVSEIHHLPAGRKPIISAWKTSSQMKEVYHLMHEQL 465

Query: 580 QQGLRI-----LLT---VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLR 629
            QG +I     L+T    L  + AE+L + L     + +V  +H ++   ++ EI+    
Sbjct: 466 DQGFQIYAVTPLITESETLDLKNAEELHKKLSHDFPDQKVVLLHGQMPGPKKDEIMTAFA 525

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVIL 688
            G+ ++LV  +++  G+D+    ++ I +AD+ G     + L Q  GR  R +  S  + 
Sbjct: 526 NGEINILVTTSVIEVGVDVANANMMVIYNADRFGL----SQLHQLRGRIGRGITQSYCVF 581

Query: 689 YADTITKS 696
            AD  T S
Sbjct: 582 VADPKTDS 589



 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 560 EIRSART--QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T   V  ++  I    Q  L +   +L  +  + + E L    +RV  +    K
Sbjct: 287 DVGSGKTVVAVYAIFAAITAGYQAALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 346

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           TLER EI R+L  G  +V++G + L+++ +   + GLV I
Sbjct: 347 TLERREIYRELTDGTINVVIGTHALIQKNVIFKKLGLVII 386


>gi|189908862|gb|ACE60552.1| dicer-like protein 2 [Brassica rapa]
          Length = 1392

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 10/97 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E + D R G  +++V  ++L EGLD+  C LV   D        +  S IQ+ GR AR  
Sbjct: 438 ETVEDFRKGLVNIIVSTSILEEGLDVQSCNLVVGFDPAS-----NICSFIQSQGR-ARMP 491

Query: 683 NSKVILY---ADTITKS-IQLAIDETTRRREKQLEHN 715
           NS  ++     D  TKS +   I    R RE  L ++
Sbjct: 492 NSDYLMMVERGDMETKSRLMTYISGGKRMREDSLRYS 528


>gi|195484183|ref|XP_002090584.1| GE13195 [Drosophila yakuba]
 gi|194176685|gb|EDW90296.1| GE13195 [Drosophila yakuba]
          Length = 821

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 34/149 (22%)

Query: 87  SEKQTREISEQTMTPSVQALARLIQSD-NPLLKNGKIWTPHRSWSINNHSKDITFFQMQT 145
           SEK   E++E+          R+ + D N  +K G+I  P RSWS +   K+I     + 
Sbjct: 360 SEKDNDEMTERDW--------RIFREDYNVTIKGGRIPNPIRSWSESGFPKEIIDIIDKV 411

Query: 146 DY-HPSGDQPAAIAQLLKGIHSREKVQLLLGV--TGSGKTFT--------------MAKV 188
            Y  P+  Q  AI     G+ +R+    ++GV  TGSGKT                + ++
Sbjct: 412 GYKEPTPIQRQAIPI---GLQNRD----IIGVAETGSGKTLAFLIPLLSWIQSLPKIERL 464

Query: 189 IEAMQRP-AIVMAPNKILAAQLYSEFKNF 216
            +  Q P AI+MAP + LA Q+  E   F
Sbjct: 465 EDVDQGPYAIIMAPTRELAQQIEEETTKF 493


>gi|194880138|ref|XP_001974373.1| GG21122 [Drosophila erecta]
 gi|190657560|gb|EDV54773.1| GG21122 [Drosophila erecta]
          Length = 816

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 34/149 (22%)

Query: 87  SEKQTREISEQTMTPSVQALARLIQSD-NPLLKNGKIWTPHRSWSINNHSKDITFFQMQT 145
           SEK   E++E+          R+ + D N  +K G+I  P RSWS +   K+I     + 
Sbjct: 355 SEKDNDEMTERDW--------RIFREDYNVTIKGGRIPNPIRSWSESGFPKEIIDIIDKV 406

Query: 146 DY-HPSGDQPAAIAQLLKGIHSREKVQLLLGV--TGSGKTFT--------------MAKV 188
            Y  P+  Q  AI     G+ +R+    ++GV  TGSGKT                + ++
Sbjct: 407 GYKEPTPIQRQAIPI---GLQNRD----IIGVAETGSGKTLAFLIPLLSWIQSLPKIERL 459

Query: 189 IEAMQRP-AIVMAPNKILAAQLYSEFKNF 216
            +  Q P AI+MAP + LA Q+  E   F
Sbjct: 460 EDVDQGPYAIIMAPTRELAQQIEEETTKF 488


>gi|45361237|ref|NP_989196.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Xenopus
           (Silurana) tropicalis]
 gi|38649000|gb|AAH63374.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Xenopus
           (Silurana) tropicalis]
          Length = 699

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 475 DLLNATGKDSL-TLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 533

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N K I 
Sbjct: 534 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNI- 592

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 593 ---NITKDL 598


>gi|76253275|emb|CAH61467.1| Pl10-related protein [Rana lessonae]
          Length = 687

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 476 DLLNATGKDSL-TLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 534

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N K I 
Sbjct: 535 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNI- 593

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 594 ---NITKDL 599


>gi|47214564|emb|CAF96237.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 384

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 41/69 (59%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+R AE LT+ L  ++  V  +H E++  ER  ++++ R G   VL+  +LL  G
Sbjct: 254 VIFVNTRRKAEWLTQRLKSQDFTVSLLHGEMEQNERNLVMKEFRSGSSRVLITTDLLARG 313

Query: 646 LDIPECGLV 654
           +D+ +  +V
Sbjct: 314 IDVQQVSMV 322


>gi|88799091|ref|ZP_01114671.1| DEAD/DEAH box helicase-like protein [Reinekea sp. MED297]
 gi|88778074|gb|EAR09269.1| DEAD/DEAH box helicase-like protein [Reinekea sp. MED297]
          Length = 579

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V T+   + L+E L  R      +  EV   +R +I+  ++ GK D+++  ++   
Sbjct: 247 IIIFVRTRVECQFLSEKLAARGYAATALSGEVAQKQREDILSAMKKGKLDIIIATDVAAR 306

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+DI    +  +++ D  G + + T  I   GRA R  + K IL+ 
Sbjct: 307 GIDIER--ITHVINWDIPGDVSTYTHRIGRTGRAGR--SGKAILFC 348


>gi|333004926|gb|EGK24446.1| transcription-repair coupling factor [Shigella flexneri VA-6]
          Length = 1148

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRYVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|332799423|ref|YP_004460922.1| primosomal protein N' [Tepidanaerobacter sp. Re1]
 gi|332697158|gb|AEE91615.1| primosomal protein N' [Tepidanaerobacter sp. Re1]
          Length = 731

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQ 208
           +Q  A+  ++K  +  ++  L+ GVTGSGKT    + IE + +     I++ P   L  Q
Sbjct: 202 EQQNALTTIIKNFNDSKRTTLIYGVTGSGKTEVYIRAIENVLKAGKKVIMLVPEISLTPQ 261

Query: 209 LYSEFKNFFP 218
           + S F++ FP
Sbjct: 262 MLSIFRSRFP 271


>gi|332308441|ref|YP_004436292.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175770|gb|AEE25024.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 421

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   E ++++L     RV  +  +V   +R++I+ D   GK D+LV  ++   GL IP 
Sbjct: 262 TKHSCEKVSDWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDILVATDVAARGLHIPM 321

Query: 651 CGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
              V   D   D E +       +  IGR  R
Sbjct: 322 VSHVFNYDLPDDAEDY-------VHRIGRTGR 346


>gi|323489534|ref|ZP_08094761.1| primosomal protein N' [Planococcus donghaensis MPA1U2]
 gi|323396665|gb|EGA89484.1| primosomal protein N' [Planococcus donghaensis MPA1U2]
          Length = 798

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARNV 682
           GK D+L+G  ++ +GLD P   LV +L AD    L       ++   L Q  GRA R+V
Sbjct: 598 GKADILLGTQMIAKGLDFPNITLVGVLSADTTLHLPDFRAAEKTYQLLTQVSGRAGRDV 656


>gi|319902744|ref|YP_004162472.1| type III restriction protein res subunit [Bacteroides helcogenes P
           36-108]
 gi|319417775|gb|ADV44886.1| type III restriction protein res subunit [Bacteroides helcogenes P
           36-108]
          Length = 760

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 12/129 (9%)

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+ + +  +E +Y  I   A+ G + ++  ++   A  +  Y   R +    + S+   +
Sbjct: 208 ELLNRQPSIERLYASIERYAR-GKKGIVYAISIAHARRIAAYYSTRGVEAVAIDSKTPAI 266

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL---IQTIG 676
           ER  ++ D R G+  VLV +++  EG D P+   + +         R   SL   +Q +G
Sbjct: 267 ERKRLVDDFRQGRIKVLVNVDIFSEGFDCPDVEFIQL--------ARPTLSLAKYLQQVG 318

Query: 677 RAARNVNSK 685
           R  R    K
Sbjct: 319 RGLRKSGDK 327


>gi|307324569|ref|ZP_07603776.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306889813|gb|EFN20792.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 463

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +AA+ G R+LL + TKR  + LT +L    +R   +H      +R   +   + G    L
Sbjct: 281 VAARDG-RVLLFLDTKRAVDRLTRHLLTSGVRAAALHGGKSQPQRTRTLDQFKSGHVTAL 339

Query: 637 VGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  N+   G+ + +  LV  +D  AD + +L          GR AR   S  ++
Sbjct: 340 VATNVAARGIHVDDLDLVVNVDPPADHKDYLHRG-------GRTARAGGSGSVI 386


>gi|258566071|ref|XP_002583780.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237907481|gb|EEP81882.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1083

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 15/129 (11%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR----YMHSEVKTLE----- 620
           DV  +IN +A+   R+++    +  AE++   L +    +R       +  K  E     
Sbjct: 664 DVGSKINESAESDTRVMIFSHFRDSAEEIVRVLKKHQPMIRPHVFVGQANAKGSEGMDQK 723

Query: 621 -RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            +++++   + G ++ +V  ++  EGLDI E  L+   D        S   ++Q +GR  
Sbjct: 724 TQLDVVSKFKTGTYNTIVATSIGEEGLDIGEVDLIICYDGHS-----SPIRMLQRMGRTG 778

Query: 680 RNVNSKVIL 688
           R     +IL
Sbjct: 779 RKRAGNIIL 787


>gi|170594503|ref|XP_001902003.1| ATP-dependent RNA helicase P62 [Brugia malayi]
 gi|158590947|gb|EDP29562.1| ATP-dependent RNA helicase P62, putative [Brugia malayi]
          Length = 587

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 5/104 (4%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +++Q  + L+ V  KR A+ LT  + ++      +H +    ER  ++ D + G+  +LV
Sbjct: 427 SSEQHCKTLIFVGMKRTADWLTRLIRKKGYPALSLHGDKSQTERNFVMNDFKNGECSILV 486

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             ++   GLD+ +   V   D  K     +    I  IGR AR+
Sbjct: 487 ATDVAARGLDVNDIKYVINFDCPK-----NIEDYIHRIGRTARH 525


>gi|114630811|ref|XP_507825.2| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan troglodytes]
          Length = 783

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  QG R ++   TK+ A++L++    +    + +H ++   +R   ++  R G F VLV
Sbjct: 435 SGHQG-RTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFRNGSFGVLV 492

Query: 638 GINLLREGLDIPECGLV 654
             N+   GLDIPE  LV
Sbjct: 493 ATNVAARGLDIPEVDLV 509


>gi|148226262|ref|NP_001080283.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Xenopus laevis]
 gi|27924277|gb|AAH44972.1| Pl10-prov protein [Xenopus laevis]
          Length = 697

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 474 DLLNATGKDSL-TLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 532

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N K I 
Sbjct: 533 CPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNI- 591

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 592 ---NITKDL 597


>gi|58038544|ref|YP_190508.1| transcription-repair coupling factor [Gluconobacter oxydans 621H]
 gi|58000958|gb|AAW59852.1| Transcription-repair coupling factor [Gluconobacter oxydans 621H]
          Length = 1173

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 5/109 (4%)

Query: 273 IVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+++V S I  +    ++    + +K G+S++Q  L+  L+   Y R D  +  G F  
Sbjct: 113 IVLTTVHSLIQRVPPRSAFRGQSISVKTGESLDQAMLIELLIANGYTRTDTVMEAGEFAT 172

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            G   ++F +   D   R+ +FG+++E I  F    G + R+ ET+K +
Sbjct: 173 RGGIFDLFLAGESD-PIRLDLFGDEVENIRAFD--VGTQ-RSTETLKCF 217



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RMAE LTE +   + +    H  +   E   ++ +   GK+D+L+  N++  GLD+P   
Sbjct: 841 RMAERLTEIV--PDAKTVQAHGRLTPTELERVMTEFADGKYDILLSTNIVESGLDMPSVN 898

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD  G       L Q  GR  R 
Sbjct: 899 TIIIHRADMFGL----GQLYQLRGRVGRG 923


>gi|56750886|ref|YP_171587.1| primosome assembly protein PriA [Synechococcus elongatus PCC 6301]
 gi|81299462|ref|YP_399670.1| primosome assembly protein PriA [Synechococcus elongatus PCC 7942]
 gi|56685845|dbj|BAD79067.1| primosomal protein N' [Synechococcus elongatus PCC 6301]
 gi|81168343|gb|ABB56683.1| replication restart DNA helicase PriA [Synechococcus elongatus PCC
           7942]
          Length = 806

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 20/101 (19%)

Query: 591 TKRMAEDLTEYLYERNI-RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            KR+  +L  Y Y+ +  R +  H +V        +   R     +LVG  +L +G+D+P
Sbjct: 578 VKRLFPELAVYRYDSDTTRQKGGHQKV--------LDQFRSQPASLLVGTQMLTKGIDLP 629

Query: 650 ECGLVAILDADKEGFL---------RSKTSLIQTIGRAARN 681
           E  LV ++ AD  G L         RS  +LIQ  GRA R 
Sbjct: 630 EVTLVGVVAAD--GLLHMPDFRASERSLQTLIQVAGRAGRG 668


>gi|66801681|ref|XP_629765.1| hypothetical protein DDB_G0292010 [Dictyostelium discoideum AX4]
 gi|60463168|gb|EAL61361.1| hypothetical protein DDB_G0292010 [Dictyostelium discoideum AX4]
          Length = 777

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 11/114 (9%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           + ++ +LTV+     E + +   ER  +   +H ++K  ER  +I + + GK  +LV  +
Sbjct: 586 KSVKPILTVI-----EKMCDQFRERKYKCGAIHGDMKQFERDSVIDNFKSGKISILVATD 640

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADT 692
           +L  G+ I    L  +++ D   F  S    +  +GR  R  N    + L+ DT
Sbjct: 641 ILGRGIHIG-GNLRFVINYD---FPSSLEQYVHRVGRTGRQGNKGHALTLFTDT 690


>gi|56808185|ref|ZP_00365964.1| COG1200: RecG-like helicase [Streptococcus pyogenes M49 591]
 gi|209559895|ref|YP_002286367.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes NZ131]
 gi|209541096|gb|ACI61672.1| Putative ATP-dependent DNA helicase [Streptococcus pyogenes NZ131]
          Length = 671

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L+ Y +E   +V  +H  +K  E+  I++D +  K  +LV   ++  G+++P   ++ I
Sbjct: 487 ELSTY-FEGIAKVALVHGRMKNDEKDAIMQDFKDKKSHILVSTTVIEVGVNVPNATIMII 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           +DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGHKQSYAVLVANPKTDS 582


>gi|329770525|ref|ZP_08261903.1| hypothetical protein HMPREF0433_01667 [Gemella sanguinis M325]
 gi|328836274|gb|EGF85943.1| hypothetical protein HMPREF0433_01667 [Gemella sanguinis M325]
          Length = 786

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 153 QPAAIAQLLKGIHSREKVQLLL-GVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQ 208
           Q   +  +LK  +     + LL GVTGSGKT    +++E      + +IV+ P  IL  Q
Sbjct: 258 QQGVLNHILKDFNKNNFNEYLLHGVTGSGKTEIYIRLVEEALKSNKNSIVLVPEIILTPQ 317

Query: 209 LYSEFKNFFPHN 220
           +  +F+N F +N
Sbjct: 318 IEKKFRNIFGNN 329



 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 11/109 (10%)

Query: 600 EYLYER--NIRVRYMHSEV--KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EYL E    +R+  M S+   K     +++ + +  K D+L+G  ++ +GLD P   LV 
Sbjct: 551 EYLLEHIPGVRITRMDSDTTNKKGAYEKLLTNFKNKKSDILLGTQMISKGLDFPNITLVG 610

Query: 656 ILDADKEGFLRSKTS-------LIQTIGRAARNVNSKVILYADTITKSI 697
           +L  D    + S  +       L+QT GRA R+  +  +++   I  +I
Sbjct: 611 VLSIDSLISIPSFKANEKLFQLLVQTAGRAGRSNKTGEVIFQTNIESNI 659


>gi|310793920|gb|EFQ29381.1| type III restriction enzyme [Glomerella graminicola M1.001]
          Length = 1113

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  E+I  I+  + G+++VLV  ++  EGLDI +  L+   DA       S   ++Q +
Sbjct: 588 MKQSEQIATIQKFKDGEYNVLVATSIGEEGLDIGQVDLIVCYDASS-----SPIRMLQRM 642

Query: 676 GRAARNVNSKVIL 688
           GR  R     ++L
Sbjct: 643 GRTGRKRAGNIVL 655


>gi|269140076|ref|YP_003296777.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|267985737|gb|ACY85566.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|304559904|gb|ADM42568.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda FL6-60]
          Length = 448

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L  +L++  I+  ++  E+   +R E I+ +  G+ +VLV  ++   GLDIP+   V  
Sbjct: 263 ELVTWLHQAGIQACFLEGEMVQAKRNEAIKRMLDGRVNVLVATDVAARGLDIPDISHVFN 322

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR 680
            D       RS    +  IGR AR
Sbjct: 323 FD-----MPRSADVYLHRIGRTAR 341


>gi|261333672|emb|CBH16667.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 616

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +G  +L+ V  KR A+ L  +L    +    +H +    ER E +R  + G   VL
Sbjct: 365 LRENEGKLVLVFVEKKRDADYLERFLRNSELACVSIHGDRVQREREEALRLFKSGACQVL 424

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLDIP  G+V   D        +    +  IGR  R
Sbjct: 425 VATDVASRGLDIPNVGVVIQYDMPS-----NIDDYVHRIGRTGR 463


>gi|158338329|ref|YP_001519506.1| ATP-dependent DNA helicase RecG [Acaryochloris marina MBIC11017]
 gi|158308570|gb|ABW30187.1| ATP-dependent DNA helicase RecG [Acaryochloris marina MBIC11017]
          Length = 818

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 11/111 (9%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N +V  +H  + + E+ E+I   R     +LV   ++  G+DIP   ++ I  AD+ G  
Sbjct: 637 NFQVGLLHGRLTSAEKEEVISQFREHTLHILVSTTVVEVGVDIPNATVMLIEHADRFGL- 695

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
              + L Q  GR  R  +    L  ++       +  ET R+R   LE ++
Sbjct: 696 ---SQLHQLRGRVGRGAHQSYCLLMNS-------SKTETARQRLAVLEQSQ 736


>gi|110641290|ref|YP_669020.1| transcription-repair coupling factor [Escherichia coli 536]
 gi|300982404|ref|ZP_07176102.1| transcription-repair coupling factor [Escherichia coli MS 200-1]
 gi|110342882|gb|ABG69119.1| transcription-repair coupling factor [Escherichia coli 536]
 gi|300307241|gb|EFJ61761.1| transcription-repair coupling factor [Escherichia coli MS 200-1]
 gi|324013204|gb|EGB82423.1| transcription-repair coupling factor [Escherichia coli MS 60-1]
          Length = 1164

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 247 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|16126087|ref|NP_420651.1| transcription-repair coupling factor [Caulobacter crescentus CB15]
 gi|221234857|ref|YP_002517293.1| transcription-repair coupling factor [Caulobacter crescentus
           NA1000]
 gi|13423283|gb|AAK23819.1| transcription-repair coupling factor [Caulobacter crescentus CB15]
 gi|220964029|gb|ACL95385.1| transcription-repair coupling factor [Caulobacter crescentus
           NA1000]
          Length = 1155

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 80/212 (37%), Gaps = 19/212 (8%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY---- 228
           L G         MA +  A       +A +   A       K F P      F S+    
Sbjct: 17  LAGAPEGFDALVMADIARARGGLTAFVARDTARAGAFIDALKFFAPEIEAVLFPSWDCLP 76

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI-VVSSVSCIYGIGSV 287
           YD   P + V  T             + R+     R L E    I V+++ + +  + + 
Sbjct: 77  YDRIGPSSGVSATRM---------ATLSRL----ARGLGESKAAILVIAAPALLQRVPTK 123

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           E   +     K+G +V+ K+L        Y R      RG F + G  I+++P   E+  
Sbjct: 124 EVLLRASYAAKVGANVDIKDLERYFAVNGYTRASTVSERGEFAIRGGVIDVYPPAAEEPV 183

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            R+ +FG+ +E I  F P T +  + ++ I +
Sbjct: 184 -RLDLFGDTLESIRAFDPETQRSTKQLKEIDL 214


>gi|76800761|ref|YP_325769.1| helicase-like protein [Natronomonas pharaonis DSM 2160]
 gi|76556626|emb|CAI48197.1| helicase homolog [Natronomonas pharaonis DSM 2160]
          Length = 450

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 19/128 (14%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDL------TEYLYERNIRVRYM----HSEVKTLERIE 623
           E+ + A++ L +L  +L +   + +      T+ +Y  +I  R++     SE+ T ER E
Sbjct: 313 EVMMNAERKLTVLADILDRHDGDRVIVFTAYTDLVY--DIAERFLIPPITSEMGTDERRE 370

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--N 681
           I+   R G +  +V  N+L EG+D+P+  +  +L         S+    Q +GR  R  +
Sbjct: 371 ILDRFRRGDYSRVVAANVLDEGVDVPDANVAVVLSGSG-----SQREFTQRLGRVLRPSD 425

Query: 682 VNSKVILY 689
              + +LY
Sbjct: 426 DGGRALLY 433


>gi|68069123|ref|XP_676472.1| RNA helicase-1 [Plasmodium berghei strain ANKA]
 gi|56496186|emb|CAH99280.1| RNA helicase-1, putative [Plasmodium berghei]
          Length = 393

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  + LT+ ++ R   V  MH ++   +R  I+R+ R G   VLV  +LL  G+D+ +
Sbjct: 270 TRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARGIDVQQ 329

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        S  + I  IGR+ R
Sbjct: 330 VSLVINYD-----LPCSPDTYIHRIGRSGR 354


>gi|49474349|ref|YP_032391.1| ATP-dependent DNA helicase recG [Bartonella quintana str. Toulouse]
 gi|49239853|emb|CAF26247.1| ATP-dependent DNA helicase recG [Bartonella quintana str. Toulouse]
          Length = 702

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H ++ T E+   +   + G   +LV   ++  G+DIP+  ++ I  A+  G    
Sbjct: 519 RVGVIHGKMSTDEKEAAMTSFKCGNICILVATTVIEVGVDIPDASIIVIEHAEHFGL--- 575

Query: 668 KTSLIQTIGRAARN--VNSKVILYADTITKS 696
            + L Q  GR  R    +S ++LY + +TK+
Sbjct: 576 -SQLHQLRGRVGRGEKKSSCILLYKNPLTKT 605


>gi|21911087|ref|NP_665355.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS315]
 gi|28895227|ref|NP_801577.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes SSI-1]
 gi|21905297|gb|AAM80158.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28810473|dbj|BAC63410.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes SSI-1]
          Length = 671

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L+ Y +E   +V  +H  +K  E+  I++D +  K  +LV   ++  G+++P   ++ I
Sbjct: 487 ELSTY-FEGIAKVALVHGRMKNDEKDAIMQDFKDKKSHILVSTTVIEVGVNVPNATIMII 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           +DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGHKQSYAVLVANPKTDS 582


>gi|254225215|ref|ZP_04918828.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
 gi|125622314|gb|EAZ50635.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
          Length = 464

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVY--------DEINLAAQQG--LRILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y        D +    ++G   ++L+ + TK  A 
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L  YL E+ +    +H       R   + D + G+  +LV  ++   G+DIP+
Sbjct: 258 RLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQ 311


>gi|332233583|ref|XP_003265983.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Nomascus leucogenys]
          Length = 577

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 395 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 454

Query: 644 EGLDI 648
            GLDI
Sbjct: 455 RGLDI 459


>gi|299740482|ref|XP_001833782.2| hypothetical protein CC1G_13093 [Coprinopsis cinerea okayama7#130]
 gi|298404266|gb|EAU88034.2| hypothetical protein CC1G_13093 [Coprinopsis cinerea okayama7#130]
          Length = 2069

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 15/139 (10%)

Query: 554  LVDPPVEIRSARTQVEDVYDEINLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
            L++PP   RS +  +E V  ++    ++    +L+ V T  + E++ E L        + 
Sbjct: 1681 LIEPPC--RSNKQAIEKVVAQVKSHMRRSHSHVLVFVQTLEVGEEVAELL-----DCGFY 1733

Query: 613  HSEVKTLE-RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
            H +VK  E R EI  +   GK  VLV  + L  G D P   LV  L A +E         
Sbjct: 1734 HGKVKKPEERQEIYMNWFSGKNKVLVATSALSAGTDCPTVDLVVHLGAPQE-----MVHY 1788

Query: 672  IQTIGRAA-RNVNSKVILY 689
            +Q + R   R   +K +LY
Sbjct: 1789 VQEVSRGGRRGQATKCVLY 1807


>gi|296393668|ref|YP_003658552.1| transcription-repair coupling factor [Segniliparus rotundus DSM
           44985]
 gi|296180815|gb|ADG97721.1| transcription-repair coupling factor [Segniliparus rotundus DSM
           44985]
          Length = 1214

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 14/184 (7%)

Query: 184 TMAKVIEAMQR--PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
            +A V+ A+ +  PA+V+ P +  A  L  E  +      V   V  ++    E   P  
Sbjct: 39  ALAFVVSAVAQSGPALVVVPGEREAGTLAQELADLIGAQRV-VLVPAWETLPHERLSPSL 97

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI--VQLKI 299
               E+   +   + R   S  R+     D  V+S+ S I     VE     +  V+L++
Sbjct: 98  RVVGERLWGLRRFLGR-EPSEGRA----PDVAVMSARSFIQ---PVEPAVLDVEPVRLRV 149

Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359
           G   +  EL   L    Y R D+   RG F V G  +++F S L+D   RV  +G++I E
Sbjct: 150 GREEDLTELAEQLTALGYTRVDLVAERGDFAVRGGILDVF-SPLDDHPVRVQFWGDEITE 208

Query: 360 ISEF 363
           +  F
Sbjct: 209 LRSF 212


>gi|296184919|ref|ZP_06853330.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
 gi|296050701|gb|EFG90124.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
          Length = 374

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E +  R   V  MH ++   +R+  +R  + G  D LV  ++   G+D+ +
Sbjct: 251 TKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGTLDFLVATDVAARGIDVDD 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              V   D  ++       S +  IGR  R  N + I Y+
Sbjct: 311 VSHVINYDLPQD-----MESYVHRIGRTGR-ANKEGIAYS 344


>gi|291533464|emb|CBL06577.1| hypothetical protein MHY_18240 [Megamonas hypermegale ART12/1]
          Length = 380

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 87/208 (41%), Gaps = 15/208 (7%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           + G+ G+ K   +A   +   +  I++  N+    + Y++F +  P  ++          
Sbjct: 30  IYGLAGTQKHIVIANAYKQNPKTTIIITHNQDGVEEWYNDFSSLLPEASI---------- 79

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYS 291
                +P  D      ++ + ++   R      L  +   I++++  + +    S + + 
Sbjct: 80  ---WELPALDVMSVSATAKSLELKAKRMKILGMLTRKEPVIILATTNAAMQKDMSRQDFE 136

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              VQ+++    E  ++L  LV   Y+R D     G     G  I+I+P +  D   R+ 
Sbjct: 137 NSSVQIELNKEYEHDKILEQLVSLGYERVDKVEQIGQCSARGGIIDIYPIN-SDTPIRIE 195

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKI 379
            F ++IE I EF   + + +RN+   +I
Sbjct: 196 FFDSEIESIREFAIDSQRSLRNIAKCEI 223


>gi|260592210|ref|ZP_05857668.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
 gi|260535844|gb|EEX18461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
          Length = 573

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 14/115 (12%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           ++DV+   N+      R+++   +K+  + +   L  ++I    MHS++   +R +I+  
Sbjct: 236 LKDVFKGGNMK-----RVIIFSGSKQKVKRIAGALSRKHINCGEMHSDLDQEQRNDIMFK 290

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            + G+ DVLV  +++  G+DI +  +V   D   D E +       +  IGR AR
Sbjct: 291 FKSGQVDVLVATDIVSRGIDIDDITMVINYDVPHDVEDY-------VHRIGRTAR 338


>gi|228477219|ref|ZP_04061857.1| primosomal protein N' [Streptococcus salivarius SK126]
 gi|228251238|gb|EEK10409.1| primosomal protein N' [Streptococcus salivarius SK126]
          Length = 798

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  + LTE L E  +    + +  K     +++     GK D+L+G  ++ +GLD P 
Sbjct: 559 TQKAYDQLTELLPEAKVIRMDVDTTRKKGAHEKLLEAFGSGKADILLGTQMIAKGLDFPN 618

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
             LV +L+AD    L       R+   L Q  GRA R
Sbjct: 619 VTLVGVLNADTSLNLPDFRSAERTFQLLTQVAGRAGR 655



 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILA 206
           +  Q  A+ ++ + I    K  LL GVTGSGKT     +IE   AM + AIV+ P   L 
Sbjct: 263 NAQQAHAVEEMTRQIGQGGKPFLLEGVTGSGKTEVYLHLIERTLAMGKTAIVLVPEISLT 322

Query: 207 AQLYSEFKNFF 217
            Q+ + F + F
Sbjct: 323 PQMTNRFISRF 333


>gi|237809398|ref|YP_002893838.1| ATP-dependent RNA helicase RhlB [Tolumonas auensis DSM 9187]
 gi|259585616|sp|C4LB49|RHLB_TOLAT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|237501659|gb|ACQ94252.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 425

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   ED+  +L     RV  +  +V   +R++I+ D   G  DVLV  ++   GL IP+
Sbjct: 265 TKHGCEDVHAWLQADGHRVGLLTGDVPQKKRLKILEDFTAGLLDVLVATDVAARGLHIPD 324

Query: 651 CGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNS 684
              V   D   D E ++      I   GRA R+ ++
Sbjct: 325 VSHVFNYDLPDDAEDYVHR----IGRTGRAGRSGHA 356


>gi|198430288|ref|XP_002129439.1| PREDICTED: similar to eukaryotic translation initiation factor 4A
           [Ciona intestinalis]
          Length = 430

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE L  R+  V  +H ++   +R  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 305 TRRKVDWLTEELQRRDFTVSALHGDMDQGDREVIMREFRSGSSRVLITTDLLARGIDVQQ 364

Query: 651 CGLV 654
             LV
Sbjct: 365 VSLV 368


>gi|58584965|ref|YP_198538.1| superfamily II DNA/RNA helicase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58419281|gb|AAW71296.1| Superfamily II DNA/RNA helicase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 408

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TK+ A+ L   L + N     +H ++K  +R  +I   R G   ++V  ++   
Sbjct: 243 IIVFVRTKQRADQLAYKLRKDNHSALAIHGDLKQRKRKRVINSFRRGHNQIMVATDVASR 302

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           GLDIP    V   DA +     S+ + I   GR AR
Sbjct: 303 GLDIPHIQHVINYDAPE-----SQANYIHRTGRTAR 333


>gi|19746733|ref|NP_607869.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS8232]
 gi|94994975|ref|YP_603073.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS10750]
 gi|19748960|gb|AAL98368.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
           MGAS8232]
 gi|94548483|gb|ABF38529.1| ATP-dependent DNA helicase recG [Streptococcus pyogenes MGAS10750]
          Length = 671

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L+ Y +E   +V  +H  +K  E+  I++D +  K  +LV   ++  G+++P   ++ I
Sbjct: 487 ELSTY-FEGIAKVALVHGRMKNDEKDAIMQDFKDKKSHILVSTTVIEVGVNVPNATIMII 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           +DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGHKQSYAVLVANPKTDS 582


>gi|21243585|ref|NP_643167.1| transcription-repair coupling factor [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21109155|gb|AAM37703.1| transcription-repair coupling factor [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 1154

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I + +     + LER+ +  D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRDLSELVPEARIGIAHGQMPERELERVML--DFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD+ G       L Q  GR  R+
Sbjct: 890 TIIINRADRFGL----AQLHQLRGRVGRS 914


>gi|137318|sp|P24125|V51K_BPL79 RecName: Full=51.5 kDa protein
 gi|215499|gb|AAA32363.1| conserved bacteriophage encoded protein [Lactococcus phage (ISOLATE
           7-9)]
          Length = 452

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
            +T   DV  E  +    G + +L   +   ++   +   E  I+  ++ ++    ER +
Sbjct: 171 GKTIFGDVVQEY-VKHANGQKAILYAHSVEASQSFAKEFQEAGIKAVHVDAKTPKNERDK 229

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ D R G+  VL  ++L+ EG D+P+C
Sbjct: 230 LMLDFRNGRIKVLCNVDLISEGFDVPDC 257


>gi|323466296|gb|ADX69983.1| DNA helicase RecG [Lactobacillus helveticus H10]
          Length = 679

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 560 EIRSART--QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T   V  ++  I    Q  L +   +L  +  + + E L    +RV  +    K
Sbjct: 287 DVGSGKTVVAVYAIFAAITAGYQVALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 346

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           TLER EI R+L  G  +V++G + L++E +   + GLV I
Sbjct: 347 TLERREIYRELTDGTINVMIGTHALIQENVIFKKLGLVII 386



 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 17/188 (9%)

Query: 522 RPTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           +P  + ++ATP   +  L     + V +I        P +      +Q+++VY ++    
Sbjct: 406 QPDILAMTATPIPRTLALTVYGDMTVSEIHHMPAGRKPIISSWKTSSQMKNVYQKMQDQL 465

Query: 580 QQGLRI-----LLT---VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLR 629
            QG +I     L+T    L  + AE+L   L     + +V  +H ++   ++ EI+    
Sbjct: 466 DQGFQIYAVTPLITESETLDLKNAEELHAKLSHDFPDQKVVLLHGQMPGPKKDEIMTAFA 525

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVIL 688
            G+ ++LV  +++  G+D+    ++ I +AD+ G     + L Q  GR  R    S  + 
Sbjct: 526 SGEINILVTTSVIEVGVDVANANMMVIYNADRFGL----SQLHQLRGRIGRGKTQSYCVF 581

Query: 689 YADTITKS 696
            AD  T S
Sbjct: 582 VADPKTDS 589


>gi|313635134|gb|EFS01462.1| transcription-repair coupling factor [Listeria seeligeri FSL
           N1-067]
          Length = 746

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H ++   E   +I     G+FDVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 427 DARVAIAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 485

Query: 666 RSKTSLIQTIGRAAR 680
              + L Q  GR  R
Sbjct: 486 ---SQLYQLRGRVGR 497


>gi|254458684|ref|ZP_05072108.1| ATP-dependent DNA helicase [Campylobacterales bacterium GD 1]
 gi|207084450|gb|EDZ61738.1| ATP-dependent DNA helicase [Campylobacterales bacterium GD 1]
          Length = 599

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 162 KGIHSREKVQLLLGVTGSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           K + SR   ++++G  GSGKT   +A     + R +I+MAP  ILA QL+ E + F P
Sbjct: 241 KDVASR---RMIVGDVGSGKTMVILASASMMLPRRSILMAPTTILANQLFEEAQKFLP 295


>gi|123478919|ref|XP_001322620.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121905469|gb|EAY10397.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 418

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD-KEGFLRSKTSLIQTIGRA 678
           ER E+++  R  K  VL+  NLL  G+DIP C +V   D   KE  L    S +   GR 
Sbjct: 310 ERREVVKKFREQKIKVLLTTNLLARGIDIPTCKVVINFDMPRKENRLPDYESYLHRQGRC 369

Query: 679 AR 680
            R
Sbjct: 370 GR 371


>gi|58617486|ref|YP_196685.1| transcription-repair coupling factor [Ehrlichia ruminantium str.
           Gardel]
 gi|58417098|emb|CAI28211.1| Transcription-repair coupling factor [Ehrlichia ruminantium str.
           Gardel]
          Length = 1123

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +I++   H ++ + E   ++ D   GKF VL+  +++  GLDIP    + I +AD  G  
Sbjct: 823 DIKIGIAHGQLPSHELENVMNDFLDGKFTVLLTTSIIECGLDIPHANTIIIHNADMFGL- 881

Query: 666 RSKTSLIQTIGRAAR 680
                L Q  GR  R
Sbjct: 882 ---AQLYQLKGRVGR 893


>gi|294637622|ref|ZP_06715901.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685]
 gi|291089177|gb|EFE21738.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685]
          Length = 448

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L  +L++  I+  ++  E+   +R E I+ +  G+ +VLV  ++   GLDIP+   V  
Sbjct: 263 ELVTWLHQAGIQACFLEGELVQAKRNEAIKRMLDGRVNVLVATDVAARGLDIPDISHVFN 322

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR 680
            D       RS    +  IGR AR
Sbjct: 323 FD-----MPRSADVYLHRIGRTAR 341


>gi|68250339|ref|YP_249451.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae 86-028NP]
 gi|68058538|gb|AAX88791.1| ATP-dependent DNA helicase [Haemophilus influenzae 86-028NP]
          Length = 693

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+ L   NI +  +H  +K  E+ +++   +  + D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLTKALPMLNIGL--VHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           I +A++ G     + L Q  GR  R   +   V++Y   + K  Q
Sbjct: 567 IENAERLGL----SQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQ 607


>gi|332374906|gb|AEE62594.1| unknown [Dendroctonus ponderosae]
          Length = 458

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MAE L++ +      V  +  ++   +RI ++   R GK  VL+  N+L  G+D+ +
Sbjct: 321 TKKMAEWLSQKMSNDGHAVAILSGDLTVEQRINVLDRFREGKEKVLITTNVLSRGIDVEQ 380

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
             +V   D   + EG    +T L   IGR  R
Sbjct: 381 VTIVVNFDLPVNVEGKADCETYL-HRIGRTGR 411


>gi|327439299|dbj|BAK15664.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 481

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 16/137 (11%)

Query: 555 VDPPVEIRSARTQVE----DVYDEINLAAQQGLRI-------LLTVLTKRMAEDLTEYLY 603
           VD  V+   A  ++E    +V DE   AA + + +       ++   TK   + L +YLY
Sbjct: 202 VDIEVQSEEAAPKIEHAVIEVQDEEKTAAVEKIAVVENPDTCIIFCRTKDRVDALHDYLY 261

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +R   V  +H  +    R+ ++ D + G F  LV  ++   G+DI    LV   D   E 
Sbjct: 262 DREYSVDKLHGGMDQSTRLLVMNDYKRGDFRYLVATDVAARGIDIENISLVINYDLPME- 320

Query: 664 FLRSKTSLIQTIGRAAR 680
               K + +   GR  R
Sbjct: 321 ----KEAYVHRTGRTGR 333


>gi|317151291|ref|XP_001824556.2| DEAD/DEAH box RNA helicase [Aspergillus oryzae RIB40]
          Length = 593

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 1/107 (0%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A    R L+ V +K  A+ L +YLY   +    +HS+    ER + +R  R  K  +L
Sbjct: 396 LLAMPPSRTLIFVNSKAQADLLDDYLYNMGLPSTSIHSDRTQREREDALRAFRTAKCPIL 455

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           V   +   GLDI     V   D  ++         +  IGR AR  N
Sbjct: 456 VATGVSARGLDIKNVMHVVNYDLPRQSH-GGIVEYVHRIGRTARIGN 501


>gi|312373567|gb|EFR21282.1| hypothetical protein AND_17289 [Anopheles darlingi]
          Length = 744

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           ++A+   + ++ V TKR  +D+T  +     R   +H +    ER  ++   R G+  +L
Sbjct: 360 ISAEPDTKTIIFVETKRRVDDITRIVNRNGWRAVAIHGDKSQQERDYVLSAFRNGRQGIL 419

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           V  ++   GLD+ +   V   D     +  +    +  IGR  R+ N+
Sbjct: 420 VATDVAARGLDVEDVKFVINYD-----YPSNSEDYVHRIGRTGRSNNT 462


>gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii DSM
           519]
 gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii]
          Length = 515

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+E L  R   V  +H ++K   R +++R  + G   +LV  ++   GLDI  
Sbjct: 249 TKRRVDELSEALSIRGYDVEGIHGDMKQERREKVLRRFKRGSIKILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 307 SGVSHVFNFD---LPQDPESYVHRIGRTGR 333


>gi|298373275|ref|ZP_06983264.1| primosomal protein N' [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274327|gb|EFI15879.1| primosomal protein N' [Bacteroidetes oral taxon 274 str. F0058]
          Length = 809

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 7/73 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK----EGFLRSKTS---LIQTI 675
           +IIR       D++VG  ++ +GLD    GLVA+L+AD       F   + +   L+Q  
Sbjct: 604 DIIRRFETQHLDIMVGTQMIAKGLDFSNVGLVAVLNADNLLNFTDFRVEENAFQMLVQIS 663

Query: 676 GRAARNVNSKVIL 688
           GRA R    +V++
Sbjct: 664 GRAGRRQAGRVMI 676


>gi|227886529|ref|ZP_04004334.1| transcription-repair coupling factor TRCF [Escherichia coli 83972]
 gi|301051097|ref|ZP_07197931.1| transcription-repair coupling factor [Escherichia coli MS 185-1]
 gi|227836733|gb|EEJ47199.1| transcription-repair coupling factor TRCF [Escherichia coli 83972]
 gi|300297269|gb|EFJ53654.1| transcription-repair coupling factor [Escherichia coli MS 185-1]
 gi|307553115|gb|ADN45890.1| transcription-repair coupling factor [Escherichia coli ABU 83972]
 gi|315291014|gb|EFU50379.1| transcription-repair coupling factor [Escherichia coli MS 153-1]
          Length = 1164

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 247 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.4 bits (85), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|261377495|ref|ZP_05982068.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
           14685]
 gi|269146228|gb|EEZ72646.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
           14685]
          Length = 473

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              V   D  K+         +  IGR  R
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGR 339


>gi|261365074|ref|ZP_05977957.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
           25996]
 gi|288566497|gb|EFC88057.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
           25996]
          Length = 457

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              V   D  K+         +  IGR  R
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGR 339


>gi|188582184|ref|YP_001925629.1| helicase domain protein [Methylobacterium populi BJ001]
 gi|179345682|gb|ACB81094.1| helicase domain protein [Methylobacterium populi BJ001]
          Length = 545

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 9/103 (8%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE + + +         + +E    ER  I+R+ R G    L  + +L  G ++PE  L+
Sbjct: 258 AESVRDAIRAEGFSCETVTAETGKRERDRIVREFRAGNIRCLASVGVLSTGFNVPEVDLI 317

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYADTI 693
           A+L   +   L      +Q +GRA R    K    V+ YA  +
Sbjct: 318 ALLRPTQSAGL-----YVQQVGRALRRAPGKSDAIVLDYAGLV 355


>gi|114669840|ref|XP_001147133.1| PREDICTED: DEAD box polypeptide 42 protein isoform 1 [Pan
           troglodytes]
          Length = 625

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 37/78 (47%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 237 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 296

Query: 645 GLDIPECGLVAILDADKE 662
           GLDIP    V   D  ++
Sbjct: 297 GLDIPSIKTVINYDVARD 314


>gi|50659095|ref|NP_004719.2| nucleolar RNA helicase 2 [Homo sapiens]
 gi|76803555|sp|Q9NR30|DDX21_HUMAN RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
           protein 21; AltName: Full=Gu-alpha; AltName:
           Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
           RNA helicase II; AltName: Full=RH II/Gu
 gi|31455230|gb|AAH08071.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens]
 gi|55664208|emb|CAH72377.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens]
 gi|119574691|gb|EAW54306.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Homo
           sapiens]
 gi|261858100|dbj|BAI45572.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
          Length = 783

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  QG R ++   TK+ A++L++    +    + +H ++   +R   ++  R G F VLV
Sbjct: 435 SGHQG-RTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFRNGSFGVLV 492

Query: 638 GINLLREGLDIPECGLV 654
             N+   GLDIPE  LV
Sbjct: 493 ATNVAARGLDIPEVDLV 509


>gi|309972869|gb|ADO96070.1| ATP-dependent DNA helicase [Haemophilus influenzae R2846]
          Length = 693

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+ L   NI +  +H  +K  E+ +++   +  + D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLTKALPMLNIGL--VHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           I +A++ G     + L Q  GR  R   +   V++Y   + K  Q
Sbjct: 567 IENAERLGL----SQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQ 607


>gi|332638696|ref|ZP_08417559.1| transcription-repair coupling factor [Weissella cibaria KACC 11862]
          Length = 1172

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 13/225 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
            L+ G++G+ +T  +A + E +QRP +++  ++  A QL  +         V  F +  +
Sbjct: 26  HLMTGISGTARTVYLAALHENIQRPMVIVGDSQFHADQLAEDLAAMVGDEHVAVFPTE-E 84

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
               E  V   DT + +  +++             L +    +V         +  V ++
Sbjct: 85  TLSAEIAVTSLDTRLARVQALH-----------LLLTDPQAVVVTGVAGVQRYLPPVATF 133

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +   +++      E  EL ++L +  Y+R       G F V G  ++I+P    D   R+
Sbjct: 134 AAAALEIDFDHEYELAELQATLYQMGYQRNGSVEQPGEFAVRGSIVDIYPLD-ADYPVRL 192

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
             F   ++ +  F   T + + N+E + I   +  V     L  A
Sbjct: 193 DFFDTALDSLRSFDAETQRSLENLEHVTILPATDLVIDAADLQAA 237



 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y+H ++   +   I+ D    ++DVLV   ++  G+DIP    + + +AD  G    
Sbjct: 856 RVGYIHGQMTEAQMEGILVDFINREYDVLVTTTIIETGVDIPNANTLFVENADHMGL--- 912

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSI 697
              L Q  GR  R+ N     +    T+S+
Sbjct: 913 -AQLYQLRGRVGRSNNIAYAYFTYPGTRSL 941


>gi|319776734|ref|YP_004139222.1| ATP-dependent DNA helicase [Haemophilus influenzae F3047]
 gi|329123155|ref|ZP_08251725.1| DNA helicase RecG [Haemophilus aegyptius ATCC 11116]
 gi|317451325|emb|CBY87563.1| ATP-dependent DNA helicase [Haemophilus influenzae F3047]
 gi|327471710|gb|EGF17152.1| DNA helicase RecG [Haemophilus aegyptius ATCC 11116]
          Length = 693

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+ L   NI +  +H  +K  E+ +++   +  + D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLTKALPMLNIGL--VHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           I +A++ G     + L Q  GR  R   +   V++Y   + K  Q
Sbjct: 567 IENAERLGL----SQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQ 607


>gi|294625045|ref|ZP_06703694.1| transcription-repair coupling factor [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600675|gb|EFF44763.1| transcription-repair coupling factor [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1154

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I + +     + LER+ +  D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRDLSELVPEARIGIAHGQMPERELERVML--DFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD+ G       L Q  GR  R+
Sbjct: 890 TIIINRADRFGL----AQLHQLRGRVGRS 914


>gi|258623163|ref|ZP_05718173.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
 gi|258584555|gb|EEW09294.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
          Length = 663

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 269 IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 328

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 329 LDVPR--ITHVFNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQIRMLRTIERVT 384

Query: 706 RR--REKQLEHNKK 717
           R    E QL H  K
Sbjct: 385 RSSMEEIQLPHRDK 398


>gi|255729652|ref|XP_002549751.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240132820|gb|EER32377.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 1162

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+I+  + G++++LV  ++  EGLDI E  L+   D+       S    +Q +GR  R  
Sbjct: 539 EVIKKFKNGEYNILVATSIGEEGLDIGEVDLIICYDS-----TSSPIKNVQRMGRTGRKR 593

Query: 683 NSKVIL 688
           + KV+L
Sbjct: 594 DGKVLL 599


>gi|240115845|ref|ZP_04729907.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|260440339|ref|ZP_05794155.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI2]
 gi|268601522|ref|ZP_06135689.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291043632|ref|ZP_06569348.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|268585653|gb|EEZ50329.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291012095|gb|EFE04084.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 462

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|240016422|ref|ZP_04722962.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140]
          Length = 462

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|229589088|ref|YP_002871207.1| transcription-repair coupling factor [Pseudomonas fluorescens
           SBW25]
 gi|229360954|emb|CAY47814.1| transcription-repair coupling factor [Pseudomonas fluorescens
           SBW25]
          Length = 1149

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 60/307 (19%), Positives = 119/307 (38%), Gaps = 55/307 (17%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   A +R  +++  +   A +L  E   F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +   +   
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELAHG----------VLVVPITTALHRLAPTKFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L IG  ++ +++ + L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMG-SKLPYRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P   + I  V++IK+                       L  R   L+
Sbjct: 184 LFDDEIETLRTFDPENQRSIDKVDSIKL-----------------------LPAREFPLQ 220

Query: 412 KEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           K+       R  +R   D       + L +  +   IE Y              TLF+Y+
Sbjct: 221 KDAVTRFKARFRERFDVDFRRCPIFQDLSSGITPAGIEYYLPLFFDET-----STLFDYL 275

Query: 466 PEDSLLF 472
           P+D+ +F
Sbjct: 276 PQDTQVF 282



 Score = 38.1 bits (87), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 13/122 (10%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E  I + +     + LE  +++ D    +F+VL+   ++  G+D+P  
Sbjct: 825 EKCAADLAELVPEARIAIGHGQMRERDLE--QVMSDFYHKRFNVLIASTIIETGIDVPSA 882

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
             + I  ADK G       L Q  GR  R+ +     YA  +T   Q    + T   EK+
Sbjct: 883 NTIIIERADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPPRQ----QITSDAEKR 931

Query: 712 LE 713
           LE
Sbjct: 932 LE 933


>gi|254419102|ref|ZP_05032826.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
 gi|196185279|gb|EDX80255.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
          Length = 699

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 10/118 (8%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A+DL   L    + V   H ++   ER  ++ D   G+  +LV   ++  G+D+P   ++
Sbjct: 505 ADDLRRLL---GVEVGLAHGQMPGAEREAVMADFADGRLPLLVATTVVEVGVDVPNASIM 561

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
            I  AD+ G L     L   +GR A+  +S ++LY          A+ ET + R + L
Sbjct: 562 VIEHADRFG-LAQLHQLRGRVGRGAK-ASSCILLYGGQ-----DGALGETAKERLETL 612


>gi|194015058|ref|ZP_03053675.1| ATP-dependent DNA helicase RecG [Bacillus pumilus ATCC 7061]
 gi|194014084|gb|EDW23649.1| ATP-dependent DNA helicase RecG [Bacillus pumilus ATCC 7061]
          Length = 682

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTE  Y     +  MH ++ + E+ +++RD    +  +LV   ++  G+++P   ++ I 
Sbjct: 494 LTE-AYRGKWSIGLMHGKLASDEKDQVMRDFTANEVQILVSTTVVEVGVNVPNATIMVIY 552

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVN-SKVILYAD 691
           DAD+ G     + L Q  GR  R  + S  +L AD
Sbjct: 553 DADRFGL----SQLHQLRGRVGRGEHQSFCVLMAD 583


>gi|193788232|dbj|BAG53126.1| unnamed protein product [Homo sapiens]
          Length = 625

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 37/78 (47%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 237 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 296

Query: 645 GLDIPECGLVAILDADKE 662
           GLDIP    V   D  ++
Sbjct: 297 GLDIPSIKTVINYDVARD 314


>gi|327403557|ref|YP_004344395.1| transcription-repair coupling factor [Fluviicola taffensis DSM
           16823]
 gi|327319065|gb|AEA43557.1| transcription-repair coupling factor [Fluviicola taffensis DSM
           16823]
          Length = 1113

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 85/198 (42%), Gaps = 22/198 (11%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G+ GS K+  +A V E +    + +  +K  AA   ++ +   P N        + Y+ P
Sbjct: 34  GLIGSSKSIAVASVCEQVPGNHLFVLEDKESAAYFLNDLEQLLPDNK-------HIYFYP 86

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-----RNDCIVVSSVSCIYGIGSVES 289
            +Y  RT   +       E+ D     A   +LE     +N  +V    +    + + + 
Sbjct: 87  ASY--RTPYQL-------EETDNANVVARAEVLEKINTGKNTWVVTYPQALFERVPTQKR 137

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
            S+  ++++ G +         L++  ++R D     G F + G  ++IF S   D  +R
Sbjct: 138 LSENTMRVERGKTYSIDFFNELLLEYGFERVDFVYEPGQFSIRGGIVDIF-SFSNDQPFR 196

Query: 350 VSMFGNDIEEISEFYPLT 367
           V  FG++++ I  F P++
Sbjct: 197 VEFFGDEVDSIRTFDPVS 214



 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV   H ++   +  +++ D   G++DVL+   ++  G+DI     + I D+   G  
Sbjct: 791 GVRVAIGHGQMDGKQLEKVMMDFIQGEYDVLIATTIIESGIDISNANTIIINDSHMFGL- 849

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
              + L Q  GR  R+ N K   Y   I++ I L   E  +R E
Sbjct: 850 ---SDLHQLRGRVGRS-NKKGFCY--LISQPISLLTSEARKRLE 887


>gi|319778250|ref|YP_004129163.1| ATP-dependent DNA helicase RecG [Taylorella equigenitalis MCE9]
 gi|317108274|gb|ADU91020.1| ATP-dependent DNA helicase RecG [Taylorella equigenitalis MCE9]
          Length = 680

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 6/91 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +I+V  +H ++K+ E+ +I++  +  +  +LV   ++  G+D+P   ++ I  A++ G  
Sbjct: 504 DIKVGLVHGQLKSSEKNDIMQKFKDNECQILVATTVIEVGVDVPNASIMVIEHAERFGL- 562

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTIT 694
                L Q  GR  R  NS   +++Y + +T
Sbjct: 563 ---AQLHQLRGRVGRGQNSSTCILIYQEPLT 590


>gi|313668514|ref|YP_004048798.1| ATP-dependent RNA helicase [Neisseria lactamica ST-640]
 gi|313005976|emb|CBN87433.1| putative ATP-dependent RNA helicase [Neisseria lactamica 020-06]
          Length = 462

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|255067653|ref|ZP_05319508.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
           29256]
 gi|255048127|gb|EET43591.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
           29256]
          Length = 457

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              V   D  K+         +  IGR  R
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGR 339


>gi|254821954|ref|ZP_05226955.1| RhlE [Mycobacterium intracellulare ATCC 13950]
          Length = 452

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ + + L ER   V  +H ++  + R + ++  R G  DVLV  ++   G+DI
Sbjct: 271 TKRTAQKVADELAERGFAVGAVHGDLGQVAREKALKAFRTGDIDVLVATDVAARGIDI 328


>gi|194865632|ref|XP_001971526.1| GG15018 [Drosophila erecta]
 gi|190653309|gb|EDV50552.1| GG15018 [Drosophila erecta]
          Length = 824

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 16/129 (12%)

Query: 567 QVEDVYDE-----------INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           Q+ DV DE            +++A+   + ++ V TK+  +++T  +  +  R   +H +
Sbjct: 378 QIVDVCDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGD 437

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
               ER  ++   R G+  +LV  ++   GLD+ +   V   D     +  +    +  I
Sbjct: 438 KSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYD-----YPSNSEDYVHRI 492

Query: 676 GRAARNVNS 684
           GR  R+ N+
Sbjct: 493 GRTGRSNNT 501


>gi|148825722|ref|YP_001290475.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae PittEE]
 gi|229846915|ref|ZP_04467021.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           7P49H1]
 gi|148715882|gb|ABQ98092.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           PittEE]
 gi|229809999|gb|EEP45719.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           7P49H1]
          Length = 693

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+ L   NI +  +H  +K  E+ +++   +  + D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLTKALPMLNIGL--VHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           I +A++ G     + L Q  GR  R   +   V++Y   + K  Q
Sbjct: 567 IENAERLGL----SQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQ 607


>gi|62087546|dbj|BAD92220.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 variant [Homo
           sapiens]
          Length = 674

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 445 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 503

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 504 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 562

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 563 ---NITKDL 568


>gi|57239455|ref|YP_180591.1| transcription-repair coupling factor [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579431|ref|YP_197643.1| transcription-repair coupling factor [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161534|emb|CAH58461.1| transcription-repair coupling factor [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58418057|emb|CAI27261.1| Transcription-repair coupling factor [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 1122

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +I++   H ++ + E   ++ D   GKF VL+  +++  GLDIP    + I +AD  G  
Sbjct: 822 DIKIGIAHGQLPSHELENVMNDFLDGKFTVLLTTSIIECGLDIPHANTIIIHNADMFGL- 880

Query: 666 RSKTSLIQTIGRAAR 680
                L Q  GR  R
Sbjct: 881 ---AQLYQLKGRVGR 892


>gi|15231074|ref|NP_191416.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75335836|sp|Q9M2F9|RH52_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 52
 gi|6735374|emb|CAB68195.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|15146288|gb|AAK83627.1| AT3g58570/F14P22_160 [Arabidopsis thaliana]
 gi|21593710|gb|AAM65677.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|27363456|gb|AAO11647.1| At3g58570/F14P22_160 [Arabidopsis thaliana]
 gi|332646279|gb|AEE79800.1| DEAD-box ATP-dependent RNA helicase 52 [Arabidopsis thaliana]
          Length = 646

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L  +L         +H +    ER   +R  + G+  +LV  ++   G
Sbjct: 409 LVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARG 468

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  NS +
Sbjct: 469 LDIPHVAHVVNFDLPND-----IDDYVHRIGRTGRAGNSGL 504


>gi|320168199|gb|EFW45098.1| DEAD box polypeptide 49 [Capsaspora owczarzaki ATCC 30864]
          Length = 611

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 5/114 (4%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +V+D Y    L   +   I++   + R  E +T  +     R   +HSE+    R+  + 
Sbjct: 403 KVKDCYLSYLLGQHEDKSIIVFTSSCRNCETITRMIKALGFRCVALHSEMSQSMRLGSLA 462

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +    ++L+  ++   GLDIP   LV   D       R+ T  +  +GR AR
Sbjct: 463 KFKSSIVNILIATDVASRGLDIPTVKLVINNDVP-----RTSTDYVHRVGRTAR 511


>gi|300974586|ref|ZP_07172647.1| transcription-repair coupling factor [Escherichia coli MS 45-1]
 gi|300410528|gb|EFJ94066.1| transcription-repair coupling factor [Escherichia coli MS 45-1]
          Length = 1164

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 247 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.4 bits (85), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|260495554|ref|ZP_05815679.1| DNA/RNA helicase [Fusobacterium sp. 3_1_33]
 gi|260196896|gb|EEW94418.1| DNA/RNA helicase [Fusobacterium sp. 3_1_33]
          Length = 942

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 11/101 (10%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L  L+ V     A+ L E   E+ I+   + SE    ER E IR L  G+ + ++ +++ 
Sbjct: 436 LHCLIFVSKVEEAKILVEKFLEQGIKAIALSSENSDNEREEAIRKLEQGEIEYIISVDIF 495

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTS---LIQTIGRAAR 680
            EG+DIP C    IL       LR  TS    IQ +GR  R
Sbjct: 496 NEGVDIP-CVNQVIL-------LRPTTSAIVYIQQLGRGLR 528


>gi|260582089|ref|ZP_05849884.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae NT127]
 gi|260094979|gb|EEW78872.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae NT127]
          Length = 693

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+ L   NI +  +H  +K  E+ +++   +  + D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLTKALPMLNIGL--VHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           I +A++ G     + L Q  GR  R   +   V++Y   + K  Q
Sbjct: 567 IENAERLGL----SQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQ 607


>gi|255025717|ref|ZP_05297703.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J2-003]
          Length = 626

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H ++   E   +I     G+FDVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 306 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 364

Query: 666 RSKTSLIQTIGRAAR 680
              + L Q  GR  R
Sbjct: 365 ---SQLYQLRGRVGR 376


>gi|242239055|ref|YP_002987236.1| transcription-repair coupling factor [Dickeya dadantii Ech703]
 gi|242131112|gb|ACS85414.1| transcription-repair coupling factor [Dickeya dadantii Ech703]
          Length = 1147

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 124/303 (40%), Gaps = 38/303 (12%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
           Q LLG +TG+      A++IE      +++AP+   A +L  E + F             
Sbjct: 16  QRLLGQLTGAACAVECAEIIERHTGLVVLIAPDMQNALRLRDEIQQF------------- 62

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
               P   +P  +T      S +++I   R S    L      +++  V+ +       +
Sbjct: 63  -SELPIMTLPDWETLPYDSFSPHQEIISARLSILYQLPTLTRGVLILPVNTLMQKVCPHT 121

Query: 290 YSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +     + LK G  + + +L S L +  Y+  D  +  G F   G  +++FP   E+  +
Sbjct: 122 FLHGHALVLKKGQRLSRDKLRSQLEQAGYRNVDQVMEHGEFATRGALLDLFPMGSEE-PF 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  V+ I +     +    PT   A++  + + + R  
Sbjct: 181 RIDFFDDEIDSLRLFDVDTQRTLNEVDHINLLPAREF----PTEKNAIELFRSQWRERF- 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E+ ++     A  L Q ++ ++           IE +          +P PTLF Y+P  
Sbjct: 236 EVRRD-----ADHLYQLVSKNI-------LPAGIEYWQPLFFS----QPLPTLFSYLPAG 279

Query: 469 SLL 471
           +LL
Sbjct: 280 TLL 282


>gi|237743041|ref|ZP_04573522.1| DNA/RNA helicase [Fusobacterium sp. 7_1]
 gi|229433601|gb|EEO43813.1| DNA/RNA helicase [Fusobacterium sp. 7_1]
          Length = 942

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 11/101 (10%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L  L+ V     A+ L E   E+ I+   + SE    ER E IR L  G+ + ++ +++ 
Sbjct: 436 LHCLIFVSKVEEAKILVEKFLEQGIKAIALSSENSDNEREEAIRKLEQGEIEYIISVDIF 495

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTS---LIQTIGRAAR 680
            EG+DIP C    IL       LR  TS    IQ +GR  R
Sbjct: 496 NEGVDIP-CVNQVIL-------LRPTTSAIVYIQQLGRGLR 528


>gi|195998213|ref|XP_002108975.1| hypothetical protein TRIADDRAFT_63563 [Trichoplax adhaerens]
 gi|190589751|gb|EDV29773.1| hypothetical protein TRIADDRAFT_63563 [Trichoplax adhaerens]
          Length = 654

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TK+ ++ L+  L      V  +H +    ER  ++ + R G+  VL+  ++  
Sbjct: 328 KTIVFVETKKKSDYLSRRLVRSGWPVLCIHGDKCQSERDRVLSEFRSGRIPVLIATDVAA 387

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLDI +  LV   D     F  +    +  IGR AR
Sbjct: 388 RGLDISDVKLVINYD-----FPNNSEDYVHRIGRTAR 419


>gi|170091668|ref|XP_001877056.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648549|gb|EDR12792.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 396

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LTE +   N  V  MH E+   ER  I+ + R
Sbjct: 255 DLYDTLTIT-----QAVIFCNTRRKVDWLTEKMRASNFTVSSMHGEMVQKERDAIMAEFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  A++E +       I  IGR+ R
Sbjct: 310 GGTSRVLITTDVWARGIDVQQVSLVINYDLPANRENY-------IHRIGRSGR 355


>gi|66813222|ref|XP_640790.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
 gi|60468778|gb|EAL66778.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
          Length = 2285

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 559 VEIRSARTQVEDVYDEINLAA-----QQGLRILLTVLTKRMAEDLT-EYLYERNIRVRYM 612
           +++ S   +  ++ D+IN          G ++L  +++++    L  + +Y  N R    
Sbjct: 379 LKLLSIEIKENNINDKINCIVFVETRDTGKKLLNLLISEKEISKLNPKLIYGHNGRNGMK 438

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSE +     +II+  + G   VLV  N+L EG+DI EC  V   D      L S  SLI
Sbjct: 439 HSEQQ-----QIIQQFKEGVCQVLVSTNVLEEGIDIKECNSVICFDN-----LYSLKSLI 488

Query: 673 QTIGR 677
           Q  GR
Sbjct: 489 QRRGR 493


>gi|82540694|ref|XP_724645.1| RNA helicase-1 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479359|gb|EAA16210.1| RNA helicase-1 [Plasmodium yoelii yoelii]
          Length = 443

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  + LT+ ++ R   V  MH ++   +R  I+R+ R G   VLV  +LL  G+D+ +
Sbjct: 271 TRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARGIDVQQ 330

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        S  + I  IGR+ R
Sbjct: 331 VSLVINYDLPC-----SPDTYIHRIGRSGR 355


>gi|332025702|gb|EGI65860.1| ATP-dependent RNA helicase DDX42 [Acromyrmex echinatior]
          Length = 752

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 586 LLTVLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           LL  +TK++ AE+L   L  +   V  +H ++  +ER ++I   +  +   LV  ++   
Sbjct: 487 LLIFVTKKLNAEELANNLKLKEFEVLLLHGDMDQIERNKVITAFKKKEVSTLVATDVAAR 546

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           GLDIP    V   D  ++  + + T  I   GRA 
Sbjct: 547 GLDIPHIKTVVNYDVARD--IDTHTHRIGRTGRAG 579


>gi|319898189|ref|YP_004136386.1| ATP-dependent DNA helicase [Haemophilus influenzae F3031]
 gi|317433695|emb|CBY82083.1| ATP-dependent DNA helicase [Haemophilus influenzae F3031]
          Length = 693

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+ L   NI +  +H  +K  E+ +++   +  + D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLTKALPMLNIGL--VHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           I +A++ G     + L Q  GR  R   +   V++Y   + K  Q
Sbjct: 567 IENAERLGL----SQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQ 607


>gi|319638186|ref|ZP_07992949.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
 gi|317400459|gb|EFV81117.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
          Length = 469

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              V   D  K+         +  IGR  R
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGR 339


>gi|313669001|ref|YP_004049285.1| DNA helicase [Neisseria lactamica ST-640]
 gi|313006463|emb|CBN87926.1| putative DNA helicase [Neisseria lactamica 020-06]
          Length = 680

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++     G+ +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPELNIGL--VHGRMKAAEKAEVMTRFSSGELNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|302661477|ref|XP_003022406.1| hypothetical protein TRV_03470 [Trichophyton verrucosum HKI 0517]
 gi|291186349|gb|EFE41788.1| hypothetical protein TRV_03470 [Trichophyton verrucosum HKI 0517]
          Length = 635

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLV 654
           DLT    E  +  RY+  +     R + +   R  +F VLV   L  EG DIP  +C L+
Sbjct: 290 DLTAKFREIGVDARYITGQTPKDVRAKELEAFRNYEFPVLVNCGLFTEGTDIPNIDCVLL 349

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR 680
           A          RSK  LIQ IGR  R
Sbjct: 350 ARP-------TRSKNLLIQMIGRGLR 368


>gi|294638300|ref|ZP_06716553.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda ATCC 23685]
 gi|291088553|gb|EFE21114.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda ATCC 23685]
          Length = 693

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 48/94 (51%), Gaps = 6/94 (6%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           +R+  +H  +K  ++ +++   + G+ D+LV   ++  G+D+P   L+ I + ++ G   
Sbjct: 518 LRIALVHGRMKAADKQQVMARFKAGEIDLLVATTVIEVGVDVPNASLMIIENPERLGL-- 575

Query: 667 SKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
               L Q  GR  R   +   V+LY   ++++ Q
Sbjct: 576 --AQLHQLRGRVGRGAVASHCVLLYKAPLSQTAQ 607


>gi|289769255|ref|ZP_06528633.1| helicase [Streptomyces lividans TK24]
 gi|289699454|gb|EFD66883.1| helicase [Streptomyces lividans TK24]
          Length = 556

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A DL + L +R      +H ++    R + +R  R GK DVLV  ++   G+D+
Sbjct: 342 TKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDV 399


>gi|270157490|ref|ZP_06186147.1| ATP-dependent helicase Lhr [Legionella longbeachae D-4968]
 gi|289164122|ref|YP_003454260.1| helicase, DEAD/DEAH box family [Legionella longbeachae NSW150]
 gi|269989515|gb|EEZ95769.1| ATP-dependent helicase Lhr [Legionella longbeachae D-4968]
 gi|288857295|emb|CBJ11122.1| putative helicase, DEAD/DEAH box family [Legionella longbeachae
           NSW150]
          Length = 1428

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 7/113 (6%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIR 626
           +++Y++I   AQ+    L+ V T+++AE +  +L  R    +V   H  +    R+E   
Sbjct: 261 DEIYEKITGLAQENRATLVFVNTRKLAERVAHHLGHRLGENKVLAHHGSLSRKLRLEAEN 320

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            L+ G   VLV    L  G+DI    LV  +     G  R+  + +Q IGRA 
Sbjct: 321 QLKNGSLKVLVATASLELGIDIGHVDLVCQI-----GSPRAIATALQRIGRAG 368


>gi|260558329|ref|ZP_05830525.1| ATP-dependent DNA helicase RecG [Enterococcus faecium C68]
 gi|293567889|ref|ZP_06679230.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1071]
 gi|260075503|gb|EEW63809.1| ATP-dependent DNA helicase RecG [Enterococcus faecium C68]
 gi|291589474|gb|EFF21281.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1071]
          Length = 678

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 91/197 (46%), Gaps = 29/197 (14%)

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELE-----QCQGIIVEQIIRPTGLVDPPVEIRSART- 566
           LR + W   RP  + ++ATP    L      +    I++++  P G +  P+E R  RT 
Sbjct: 395 LREKGW---RPDVLFMTATPIPRTLAITAYGEMDVSIIDEL--PAGRI--PIETRWVRTP 447

Query: 567 QVEDVYD--EINLAAQQGLRILLTVLTKRMAEDLTEY--LYER-------NIRVRYMHSE 615
           Q++ V D  +  LA    + ++  ++ +  A D+     +YE+          V  +H +
Sbjct: 448 QLDSVLDWTKKELARGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGK 507

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  E+  I+   +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  
Sbjct: 508 MKNQEKEVIMEAFKDNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLR 563

Query: 676 GRAARNVN-SKVILYAD 691
           GR  R  + S  IL A+
Sbjct: 564 GRVGRGSDASYCILVAN 580


>gi|82751683|ref|YP_417424.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
 gi|123548216|sp|Q2YUH3|Y1965_STAAB RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAB1965c
 gi|82657214|emb|CAI81654.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
          Length = 506

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 336


>gi|117925938|ref|YP_866555.1| type III restriction enzyme, res subunit [Magnetococcus sp. MC-1]
 gi|117609694|gb|ABK45149.1| type III restriction enzyme, res subunit [Magnetococcus sp. MC-1]
          Length = 398

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A+++T+     ++    +H E+ T ER   +     G   V+V + +L EG D P    V
Sbjct: 249 AQNVTDAFNNADVEAVMVHGELSTAERKAALARFEKGSAMVVVNVAVLTEGYDHPPTSCV 308

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +L          K+++IQ +GR  R V+
Sbjct: 309 VLLRPSSY-----KSTMIQMVGRGLRTVD 332


>gi|145639715|ref|ZP_01795318.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           PittII]
 gi|145271272|gb|EDK11186.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           PittII]
 gi|309750684|gb|ADO80668.1| ATP-dependent DNA helicase [Haemophilus influenzae R2866]
          Length = 693

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+ L   NI +  +H  +K  E+ +++   +  + D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLTKALPMLNIGL--VHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           I +A++ G     + L Q  GR  R   +   V++Y   + K  Q
Sbjct: 567 IENAERLGL----SQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQ 607


>gi|328473273|gb|EGF44121.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           10329]
          Length = 1153

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 59/300 (19%), Positives = 124/300 (41%), Gaps = 38/300 (12%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L  + G+     +A++ +     ++++ P+  +A +L +E + F      +  VS +  +
Sbjct: 21  LGNLPGAALPLAIAELAKQHSSHSLLVVPDPQIALKLQAEIEQF-----TDQPVSLFPDW 75

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS- 291
           +   Y    D +   +  I+++I R+       L  +   + +  VS +    S   +  
Sbjct: 76  ETLPY----DNFSPHQEIISDRIARLYQ-----LPNQRGGVTIVPVSTVLQRQSPRDFLL 126

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q  + +K GD+   + L   L    Y+  D     G +   G  +++FP    D  +R+ 
Sbjct: 127 QHTLMVKTGDNFSLENLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSAD-PYRID 185

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            F ++I+ I  F P   + I +++ I++     +    PT   A++  +   + +     
Sbjct: 186 FFDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEF----PTTKEAIEDFRTRWRTQ----- 236

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                 EA+R  + I   +++ + T     IE +              TLF+Y+PEDS L
Sbjct: 237 -----FEARREPESIY--MQVTKRTWPA-GIEYWQPLFFDHT-----ETLFDYLPEDSQL 283



 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AEDL + + E  I V +     + LERI  + D    +F+VLV   ++  G+D+P  
Sbjct: 826 EKTAEDLQKLIPEARITVAHGQMRERELERI--MNDFYHQRFNVLVCTTIIETGIDVPTA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + +  AD  G       L Q  GR  R+
Sbjct: 884 NTIIMDRADNLGL----AQLHQLRGRVGRS 909


>gi|326491859|dbj|BAJ98154.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 786

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 37/71 (52%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RIL+  L K+ AE + + L  +  +V+ +H +     R + I   R G+  +LV  ++  
Sbjct: 623 RILVFALYKKEAERIEQTLRRKGWKVQGIHGDKSQALRSKAIESFRSGEEPLLVATDVAA 682

Query: 644 EGLDIPECGLV 654
            GLDIP+   V
Sbjct: 683 RGLDIPDVEYV 693


>gi|307173398|gb|EFN64357.1| Probable ATP-dependent RNA helicase DDX5 [Camponotus floridanus]
          Length = 639

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 12/140 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  +D+T  +     +   +H +    ER  ++++ R G+  +LV  ++  
Sbjct: 387 KTIIFVETKRKVDDITRNIRRDGWQAVSIHGDKNQQERDHVLQEFRSGRAPILVATDVAA 446

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLD+ +   V   D     +  S    I  IGR  R   +    YA   + +++ A D 
Sbjct: 447 RGLDVDDVKYVINFD-----YPSSSEDYIHRIGRTGRRRQTGTA-YAFFTSHNMKHAGDL 500

Query: 704 TTRRREKQLEHNKKHNINPQ 723
               RE         N+NP+
Sbjct: 501 IEVLRE------AGQNVNPR 514


>gi|294884893|gb|ADF47451.1| vasa PlVAS1-like protein [Dugesia japonica]
          Length = 802

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+ V +KRMA+     L     +   +H + +  +R   + D + G+ + +V  N+  
Sbjct: 617 KTLIFVESKRMADFFGIKLGFLGFKATTIHGDREQEQREIALNDFKSGRVNFMVATNVAA 676

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSIQLA 700
            GLDIP+  +  +++ D  G +    + +  IGR  R  NV   +  + D  TK I LA
Sbjct: 677 RGLDIPK--VDNVINIDMPGDI---DTYVHRIGRTGRCGNVGRAISFFDD--TKDIALA 728


>gi|302508978|ref|XP_003016449.1| hypothetical protein ARB_04738 [Arthroderma benhamiae CBS 112371]
 gi|291180019|gb|EFE35804.1| hypothetical protein ARB_04738 [Arthroderma benhamiae CBS 112371]
          Length = 635

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLV 654
           DLT    E  +  RY+  +     R + +   R  +F VLV   L  EG DIP  +C L+
Sbjct: 290 DLTAKFREIGVDARYITGQTPKDVRAKELEAFRNYEFPVLVNCGLFTEGTDIPNIDCVLL 349

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR 680
           A          RSK  LIQ IGR  R
Sbjct: 350 ARP-------TRSKNLLIQMIGRGLR 368


>gi|289616575|emb|CBI56740.1| unnamed protein product [Sordaria macrospora]
          Length = 592

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 35/65 (53%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V +KR A++L ++L+ + +    MH E    ER   +R  R G+  VL+   +  
Sbjct: 400 RTIIFVNSKRAADELDDFLFNKGVPCVSMHGERTQREREAAMRAFRAGRSPVLITTAVTA 459

Query: 644 EGLDI 648
            G+D+
Sbjct: 460 RGIDV 464


>gi|240080542|ref|ZP_04725085.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA19]
 gi|240118143|ref|ZP_04732205.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|240123692|ref|ZP_04736648.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|268596673|ref|ZP_06130840.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268603859|ref|ZP_06138026.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682325|ref|ZP_06149187.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268550461|gb|EEZ45480.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268587990|gb|EEZ52666.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268622609|gb|EEZ55009.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
          Length = 462

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|229527823|ref|ZP_04417214.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)]
 gi|229334185|gb|EEN99670.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)]
          Length = 464

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVY--------DEINLAAQQG--LRILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y        D +    ++G   ++L+ + TK  A 
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L  YL E+ +    +H       R   + D + G+  +LV  ++   G+DIP+
Sbjct: 258 RLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQ 311


>gi|189520693|ref|XP_001923830.1| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Danio rerio]
          Length = 671

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TK+  ++LT  +         +H +    ER  ++ + R GK  +L
Sbjct: 337 IMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPIL 396

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N
Sbjct: 397 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN 438


>gi|156099810|ref|XP_001615701.1| RNA helicase-1 [Plasmodium vivax SaI-1]
 gi|5679692|emb|CAB51741.1| RNA helicase-1 [Plasmodium cynomolgi]
 gi|148804575|gb|EDL45974.1| RNA helicase-1, putative [Plasmodium vivax]
          Length = 398

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  + LT+ ++ R   V  MH ++   +R  I+R+ R G   VLV  +LL  G+D+ +
Sbjct: 271 TRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARGIDVQQ 330

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        S  + I  IGR+ R
Sbjct: 331 VSLVINYD-----LPCSPDTYIHRIGRSGR 355


>gi|117924535|ref|YP_865152.1| type III restriction enzyme, res subunit [Magnetococcus sp. MC-1]
 gi|117608291|gb|ABK43746.1| type III restriction enzyme, res subunit [Magnetococcus sp. MC-1]
          Length = 560

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A+++T+     ++    +H E+ T ER   +     G   V+V + +L EG D P    V
Sbjct: 249 AQNVTDAFNNADVEAVMVHGELTTAERKAALARFEKGSAMVVVNVAVLTEGYDHPPTSCV 308

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +L          K+++IQ +GR  R V+
Sbjct: 309 VLLRPSS-----YKSTMIQMVGRGLRTVD 332


>gi|313207139|ref|YP_004046316.1| transcription-repair coupling factor [Riemerella anatipestifer DSM
           15868]
 gi|312446455|gb|ADQ82810.1| transcription-repair coupling factor [Riemerella anatipestifer DSM
           15868]
          Length = 1119

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 96/221 (43%), Gaps = 28/221 (12%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF-VSYYDYYQ 233
           G+ GS  +   A++     +P +++  +K  A    +E +     + V YF  ++ + YQ
Sbjct: 37  GMAGSSPSLICAELFLTQNQPILLIVDDKEDAHYTTTELEELLGEDKVLYFPATHLEPYQ 96

Query: 234 PEA-----YVPRTDTYIEKESSINEQIDRMRHSA-TRSLLERNDCIVVSSVSCIYGIGSV 287
            E       V RT+   +  ++   ++    ++A    +L++ D   +S           
Sbjct: 97  TEKTQNANLVLRTEVLNQLNANPEPKVIVAHYAALCEKVLKKEDFKAISH---------- 146

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQ-QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                    +K+G  ++  +    L++Q  +   D     G F V G  +++F S+  D 
Sbjct: 147 --------HIKVGYQLD-FDFTGELLEQFNFHLTDFVSEPGEFAVRGGIVDVF-SYANDK 196

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            +R++ FGN++E I  F   T   I  VE++++ +N ++  
Sbjct: 197 PYRITFFGNEVESIKTFDIETQLSISKVESLQLVSNMNFAV 237



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H ++   +  E I D   G++DVLV   ++  G+D+P    + I DA + G    
Sbjct: 794 RVITGHGQMDGKQLEENILDFMEGRYDVLVSTTIVESGVDVPNANTIFINDAQRFGM--- 850

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
              + Q  GR  R+ N K   Y   IT    +   +  +R E
Sbjct: 851 -ADVHQMRGRVGRS-NRKAFCY--LITPPFDMVTSDARKRLE 888


>gi|311106511|ref|YP_003979364.1| ATP-dependent DNA helicase RecG [Achromobacter xylosoxidans A8]
 gi|310761200|gb|ADP16649.1| ATP-dependent DNA helicase RecG [Achromobacter xylosoxidans A8]
          Length = 696

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H  +   E+  +++  R G+ D+LV   ++  G+D+P   L+ I  A++ G  
Sbjct: 520 DLRIGLVHGRLPQAEKAAVMQAFRDGEVDLLVATTVIEVGVDVPNASLMVIEHAERFGL- 578

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITK 695
                L Q  GR  R       V+LY   +++
Sbjct: 579 ---AQLHQLRGRVGRGTAESVCVLLYQTPLSQ 607


>gi|304382917|ref|ZP_07365399.1| ATP-dependent RNA helicase DeaD [Prevotella marshii DSM 16973]
 gi|304335942|gb|EFM02190.1| ATP-dependent RNA helicase DeaD [Prevotella marshii DSM 16973]
          Length = 420

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++    K   +D+   L   +I+   MHS++   ER EI+   + G  DVLV  +++ 
Sbjct: 247 RTIIFSGKKNKVKDINRALQRLHIKSGEMHSDLTQAERDEIMYRFKSGAIDVLVATDIVA 306

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D       R     +  IGR AR
Sbjct: 307 RGIDIDDIYTVINYDVP-----RDAEDYVHRIGRTAR 338


>gi|296328513|ref|ZP_06871032.1| DNA/RNA helicase (DEAD/DEAH box family) [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296154322|gb|EFG95121.1| DNA/RNA helicase (DEAD/DEAH box family) [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 942

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 15/133 (11%)

Query: 555 VDPPVEIRSART--QVEDVYDEINLAAQQGLRILLTVLTKRMAED--LTEYLYERNIRVR 610
           +D    I++  +  +V+ + ++    +  G R+   +   ++ E   L E   E+ ++  
Sbjct: 404 IDEKTSIKNLTSDERVKHILEKSKYYSYSGERLYCLIFVSKVEEAKILVEKFLEQGVKAI 463

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            + SE    ER E IR L  G+ + +V +++  EG+DIP C    IL       LR  TS
Sbjct: 464 ALSSENSDNEREEAIRKLEQGEIEYIVSVDIFNEGVDIP-CVNQVIL-------LRPTTS 515

Query: 671 ---LIQTIGRAAR 680
               IQ +GR  R
Sbjct: 516 AIVYIQQLGRGLR 528


>gi|289742393|gb|ADD19944.1| eukaryotic initiation factor 4a [Glossina morsitans morsitans]
          Length = 403

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++        ++   T+R  + LTE +   N  V  MH +++  +R  I++  R
Sbjct: 262 DLYDTLSITQS-----VIFCNTRRKVDQLTEEMTTHNFTVSAMHGDMEQRDRELIMKQFR 316

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 317 SGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 354


>gi|281415806|ref|ZP_06247548.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
          Length = 597

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TKR A  + + L  R      +H ++    R + +R  R GK D+LV  ++  
Sbjct: 293 RTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAFRNGKVDILVATDVAA 352

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+D+ +   V    A ++     + + +  +GR  R  N  V +
Sbjct: 353 RGIDVDDVTHVFNFQAPED-----EKTYVHRVGRTGRAGNKGVAV 392


>gi|258624003|ref|ZP_05718956.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
 gi|258583797|gb|EEW08593.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
          Length = 663

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 269 IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 328

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 329 LDVPR--ITHVFNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQIRMLRTIERVT 384

Query: 706 RR--REKQLEHNKK 717
           R    E QL H  K
Sbjct: 385 RSSMEEIQLPHRDK 398


>gi|229514699|ref|ZP_04404160.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21]
 gi|229348679|gb|EEO13637.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21]
          Length = 464

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVY--------DEINLAAQQG--LRILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y        D +    ++G   ++L+ + TK  A 
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L  YL E+ +    +H       R   + D + G+  +LV  ++   G+DIP+
Sbjct: 258 RLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQ 311


>gi|256823635|ref|YP_003147598.1| ATP-dependent DNA helicase RecG [Kangiella koreensis DSM 16069]
 gi|256797174|gb|ACV27830.1| ATP-dependent DNA helicase RecG [Kangiella koreensis DSM 16069]
          Length = 700

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 595 AEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           AE     L E+  N RV  +H  +K  ++  ++   + G  D+LV   ++  G+D+P   
Sbjct: 511 AESAANLLTEQLPNCRVGLLHGRLKPEQKQLVMDKFKQGDLDILVATTVIEVGVDVPNAS 570

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVIL 688
           L+ I + ++ G     + L Q  GR  R +V S  +L
Sbjct: 571 LMVIENPERLGL----SQLHQLRGRVGRGSVESHCVL 603


>gi|261400326|ref|ZP_05986451.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC
           23970]
 gi|269209952|gb|EEZ76407.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC
           23970]
          Length = 462

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|209879275|ref|XP_002141078.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556684|gb|EEA06729.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 397

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +        ++    K   E L+  + E +  V ++H ++   +R +I+R+ R
Sbjct: 256 DLYDTLTITQS-----VIFCNKKAKVEWLSSKMIENHFTVSFVHGDLSQKDREQILREFR 310

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GK  VL+  +L   G+DI +  LV   D        +K   I  IGR+ R
Sbjct: 311 QGKTRVLIATDLWGRGIDIQQINLVINYDIPT-----NKELYIHRIGRSGR 356


>gi|198285649|gb|ACH85363.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Salmo salar]
          Length = 611

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 30/183 (16%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQVED-------- 570
           P T++ SAT  SW  +     + ++ +RPT     L+    + + A T VE         
Sbjct: 216 PQTLLFSATCPSWVYD-----VAKRYMRPTYEHVDLIGK--KTQKAATTVEHLAIACHWS 268

Query: 571 -----VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
                + D + + +    R ++   TK+ A +L+     +    + +H ++   +R   +
Sbjct: 269 QRAAVIGDVVQVYSGSHGRTIVFCETKKDANELSMNASIKQ-SSQSLHGDIPQKQREITL 327

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +  R G F+VLV  N+   GLDIPE  LV      K+       S I   GR  R   + 
Sbjct: 328 KGFRSGTFEVLVATNVAARGLDIPEVDLVVQCSPPKD-----VESYIHRSGRTGRAGRTG 382

Query: 686 VIL 688
           V +
Sbjct: 383 VCI 385


>gi|198463474|ref|XP_002135506.1| GA28589 [Drosophila pseudoobscura pseudoobscura]
 gi|198151271|gb|EDY74133.1| GA28589 [Drosophila pseudoobscura pseudoobscura]
          Length = 799

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 16/129 (12%)

Query: 567 QVEDVYDEI-----------NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           Q+ DV DE            +++A+   + ++ V TK+  +++T  +  +  R   +H +
Sbjct: 363 QIVDVCDESEKLGKLIKLLSDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGD 422

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
               ER  ++   R G+  +LV  ++   GLD+ +   V   D     +  +    +  I
Sbjct: 423 KSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYD-----YPSNSEDYVHRI 477

Query: 676 GRAARNVNS 684
           GR  R+ N+
Sbjct: 478 GRTGRSNNT 486


>gi|167394408|ref|XP_001733535.1| pre-mRNA-processing ATP-dependent RNA helicase prp11 [Entamoeba
           dispar SAW760]
 gi|165894690|gb|EDR22596.1| pre-mRNA-processing ATP-dependent RNA helicase prp11, putative
           [Entamoeba dispar SAW760]
          Length = 636

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 9/127 (7%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG-KFDVLVGI 639
           +G RI++   T++  ++L + L ERNI    +H  +  ++R   I++ + G    +L+  
Sbjct: 301 KGGRIIIFTETQKNCDELYQNLMERNINCLLLHGGIDQIDRQNTIQEFKSGIGRTILITT 360

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL------YADTI 693
           +L   GLDI   GL  +++ D    L      +   GRA +   +   +      Y++ I
Sbjct: 361 SLCARGLDIK--GLELVINYDCPNHLEDYVHRVGRTGRAGKRGKAITFITKEEEKYSEDI 418

Query: 694 TKSIQLA 700
            K++ L+
Sbjct: 419 VKALTLS 425


>gi|149633893|ref|XP_001512924.1| PREDICTED: similar to helicase like protein 2 [Ornithorhynchus
           anatinus]
          Length = 651

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 419 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 477

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 478 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 536

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 537 ---NITKDL 542


>gi|116333167|ref|YP_794694.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
 gi|116098514|gb|ABJ63663.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
          Length = 523

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++   L  R      +H ++    R +I+ D R GK D+LV  ++   G+DI +
Sbjct: 248 TKRRVDEIASGLEARGYNAAGIHGDLTQKRRTQIMNDFRHGKLDILVATDVAARGIDIND 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              V   D  ++       S +  +GR  R
Sbjct: 308 VTHVYNYDIPQD-----PDSYVHRVGRTGR 332


>gi|94991096|ref|YP_599196.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS10270]
 gi|94544604|gb|ABF34652.1| ATP-dependent DNA helicase recG [Streptococcus pyogenes MGAS10270]
          Length = 671

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L+ Y +E   +V  +H  +K  E+  I++D +  K  +LV   ++  G+++P   ++ I
Sbjct: 487 ELSTY-FEGIAKVALVHGRMKNDEKDAIMQDFKDKKSHILVSTTVIEVGVNVPNATIMII 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           +DAD+ G     + L Q  GR  R +  S  +L A+  T S
Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGHKQSYAVLVANPKTDS 582


>gi|62896755|dbj|BAD96318.1| DEAD-box protein abstrakt variant [Homo sapiens]
          Length = 622

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+         T  I  A DE+
Sbjct: 495 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNT------GNATTFINKACDES 543

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 544 VLMDLKALLLEAKQKVPP 561


>gi|332971662|gb|EGK10611.1| transcription-repair coupling factor [Psychrobacter sp. 1501(2011)]
          Length = 1243

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +RMAE++ E + E  + V +     + LE  ++++     KF+VLV   ++  G+D+P  
Sbjct: 911 ERMAENIRELVPEARVGVAHGQMNERGLE--QVMQQFYHKKFNVLVCTTIIETGIDVPNA 968

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 969 NTIIIERADKFGL----AQLHQLRGRVGRS 994


>gi|332559068|ref|ZP_08413390.1| DNA helicase [Rhodobacter sphaeroides WS8N]
 gi|332276780|gb|EGJ22095.1| DNA helicase [Rhodobacter sphaeroides WS8N]
          Length = 1679

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 17/170 (10%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+   E + E+L  + I   + H+ +   ++  +    R+G   V+   N    G+D P+
Sbjct: 507 TRAETERIAEFLKRQGIAAEHFHAGLTPDDKQTVQERFRVGDLRVIAATNAFGMGIDKPD 566

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN---VNSKVILYADTITKSIQLAIDETTRR 707
             LV  L AD  G L    + +Q  GRA R+    +  ++ ++D + +   L       R
Sbjct: 567 IRLV--LHADIPGSLE---NYLQEAGRAGRDRQPADCVLLYHSDDVERQFTLTARSRLER 621

Query: 708 RE-----KQLEHNKKHNINPQSVKEKIMEVI----DPILLEDAATTNISI 748
            E     K L    +H  N   V     E++    D   + D+AT +  +
Sbjct: 622 HEIGAIFKALRRIDEHTRNSGKVVASAGEIVREEKDRAFVRDSATDDTRV 671


>gi|301170495|emb|CBW30102.1| ATP-dependent DNA helicase [Haemophilus influenzae 10810]
          Length = 693

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+ L   NI +  +H  +K  E+ +++   +  + D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLTKALPMLNIGL--VHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           I +A++ G     + L Q  GR  R   +   V++Y   + K  Q
Sbjct: 567 IENAERLGL----SQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQ 607


>gi|289192008|ref|YP_003457949.1| reverse gyrase [Methanocaldococcus sp. FS406-22]
 gi|288938458|gb|ADC69213.1| reverse gyrase [Methanocaldococcus sp. FS406-22]
          Length = 1119

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 19/97 (19%)

Query: 568 VEDVYDE----------INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           V D+YDE          I L    G+  +        A+++ +YL + NI+ + +HS+ K
Sbjct: 301 VVDIYDEEFSKEKILEYIKLFGSGGIVFVSIDYGVEKAQEIEKYLLDNNIKAKLIHSKDK 360

Query: 618 TLERIEIIRDLRLGKFDVLVGI----NLLREGLDIPE 650
                +   D R GK DVL+G+     +L  GLD+PE
Sbjct: 361 -----KGFDDFREGKIDVLIGVASYYGVLVRGLDMPE 392


>gi|261207034|ref|ZP_05921723.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TC 6]
 gi|289565332|ref|ZP_06445782.1| ATP-dependent DNA helicase RecG [Enterococcus faecium D344SRF]
 gi|294615352|ref|ZP_06695225.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1636]
 gi|260078662|gb|EEW66364.1| ATP-dependent DNA helicase RecG [Enterococcus faecium TC 6]
 gi|289162822|gb|EFD10672.1| ATP-dependent DNA helicase RecG [Enterococcus faecium D344SRF]
 gi|291591726|gb|EFF23362.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E1636]
          Length = 678

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 91/197 (46%), Gaps = 29/197 (14%)

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELE-----QCQGIIVEQIIRPTGLVDPPVEIRSART- 566
           LR + W   RP  + ++ATP    L      +    I++++  P G +  P+E R  RT 
Sbjct: 395 LREKGW---RPDVLFMTATPIPRTLAITAYGEMDVSIIDEL--PAGRI--PIETRWVRTP 447

Query: 567 QVEDVYD--EINLAAQQGLRILLTVLTKRMAEDLTEY--LYER-------NIRVRYMHSE 615
           Q++ V D  +  LA    + ++  ++ +  A D+     +YE+          V  +H +
Sbjct: 448 QLDSVLDWTKKELARGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGK 507

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  E+  I+   +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  
Sbjct: 508 MKNQEKEVIMEAFKDNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLR 563

Query: 676 GRAARNVN-SKVILYAD 691
           GR  R  + S  IL A+
Sbjct: 564 GRVGRGSDASYCILVAN 580


>gi|254670282|emb|CBA05583.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha153]
          Length = 680

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++     G+ +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPELNIGL--VHGRMKAAEKAEVMARFSSGELNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|196247690|ref|ZP_03146392.1| primosomal protein N' [Geobacillus sp. G11MC16]
 gi|196212474|gb|EDY07231.1| primosomal protein N' [Geobacillus sp. G11MC16]
          Length = 620

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 153 QPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQR---PAIVMAPNKILAAQ 208
           Q  A+A +   + +RE +  LL GVTGSGKT    + IE + R    AIV+ P   L  Q
Sbjct: 268 QTKALAAITASVRAREHRTFLLYGVTGSGKTEVYMQAIEEVLRQGKEAIVLVPEISLTPQ 327

Query: 209 LYSEFKN-FFPHNAV 222
           +   FK  F P  AV
Sbjct: 328 MVERFKGRFGPKVAV 342


>gi|154301827|ref|XP_001551325.1| hypothetical protein BC1G_10065 [Botryotinia fuckeliana B05.10]
 gi|160380621|sp|A6SBT4|DBP5_BOTFB RecName: Full=ATP-dependent RNA helicase dbp5
 gi|150855727|gb|EDN30919.1| hypothetical protein BC1G_10065 [Botryotinia fuckeliana B05.10]
          Length = 470

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 7/100 (7%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V  +  A ++ E L +   +V  +H   +  ER +++ D R GK  VL+  N+L  G
Sbjct: 312 IIFVKRRDTASNIAERLTKEGHKVAAVHGAFEGSERDQVLEDFRQGKAKVLITTNVLARG 371

Query: 646 LDIPECGLVAILDADKEGFLRSKT-----SLIQTIGRAAR 680
           +D+    +V   D   +G  RS +     + +  IGR  R
Sbjct: 372 IDVQSVSMVINYDVPMKG--RSDSDPPPETYLHRIGRTGR 409


>gi|300794325|ref|NP_001179891.1| ATP-dependent RNA helicase DDX3X [Bos taurus]
 gi|297493243|ref|XP_002700250.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Bos
           taurus]
 gi|296470612|gb|DAA12727.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Bos taurus]
          Length = 661

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 432 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 490

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 491 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 549

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 550 ---NITKDL 555


>gi|74006746|ref|XP_861599.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 13 [Canis familiaris]
          Length = 656

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 427 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 485

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 486 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 544

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 545 ---NITKDL 550


>gi|59801077|ref|YP_207789.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|194098823|ref|YP_002001886.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239999112|ref|ZP_04719036.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae 35/02]
 gi|240113089|ref|ZP_04727579.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|240125882|ref|ZP_04738768.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254493889|ref|ZP_05107060.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268594948|ref|ZP_06129115.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268599176|ref|ZP_06133343.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268684482|ref|ZP_06151344.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|293398939|ref|ZP_06643104.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|59717972|gb|AAW89377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|193934113|gb|ACF29937.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512929|gb|EEH62274.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548337|gb|EEZ43755.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268583307|gb|EEZ47983.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268624766|gb|EEZ57166.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|291610353|gb|EFF39463.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|317164404|gb|ADV07945.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 462

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|159117719|ref|XP_001709079.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           ATCC 50803]
 gi|157437194|gb|EDO81405.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           ATCC 50803]
          Length = 391

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 10/113 (8%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           VED+Y    L+ QQG  ++      R+ E L E L      +  +HSE+   ER +I+ +
Sbjct: 248 VEDIYKV--LSVQQG--VIFCNSIGRVKE-LAEKLKSAGHTLSCIHSELDQAERNKIMGE 302

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            R G+  +L+  N++  G+D+    LV   D  +E       + +  IGR+ R
Sbjct: 303 FRSGQTRILIATNIIARGIDVQNVSLVINYDIPRE-----PETYLHRIGRSGR 350


>gi|301171467|ref|NP_001180345.1| ATP-dependent RNA helicase DDX3X isoform 2 [Homo sapiens]
          Length = 661

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 433 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 550

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 551 ---NITKDL 556


>gi|297817170|ref|XP_002876468.1| hypothetical protein ARALYDRAFT_486308 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322306|gb|EFH52727.1| hypothetical protein ARALYDRAFT_486308 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 639

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L  +L         +H +    ER   +R  + G+  +LV  ++   G
Sbjct: 400 LVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARG 459

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  NS +
Sbjct: 460 LDIPHVAHVVNFDLPND-----IDDYVHRIGRTGRAGNSGL 495


>gi|291542986|emb|CBL16096.1| ATP-dependent DNA helicase RecG [Ruminococcus bromii L2-63]
          Length = 681

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +I V  +H ++K+ E+ E++R     ++ VLV   ++  G+D+P   ++ I +A++ G  
Sbjct: 500 DIAVGIVHGQMKSDEKDEVMRKFVENEYSVLVATTVIEVGVDVPNATVIVIENAERFGL- 558

Query: 666 RSKTSLIQTIGRAARNVN-SKVILYADTITKS 696
              + L Q  GR  R  + S  IL +D  +K+
Sbjct: 559 ---SQLHQLRGRVGRGSSQSYCILISDKGSKT 587


>gi|254674247|emb|CBA10031.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha275]
          Length = 462

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|254527187|ref|ZP_05139239.1| transcription-repair coupling factor [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538611|gb|EEE41064.1| transcription-repair coupling factor [Prochlorococcus marinus str.
           MIT 9202]
          Length = 1169

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 108/245 (44%), Gaps = 22/245 (8%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
           ++L+K I    ++ ++ G +   K+  +A + +  ++  +++ PN  +A           
Sbjct: 17  SELIKRISKNNELNVI-GSSRYAKSIILASIAKKEEKNILLICPNVEIA----------- 64

Query: 218 PHNAVEYFVSYYD----YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            +  + YF S  D    YY P  ++P       KE   + Q+  +     +   E N  I
Sbjct: 65  -YKWIGYFESINDKSVLYYPPTEHLPYASINKSKEIEFS-QLTVLSKLIKKKKNELN--I 120

Query: 274 VVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           V+S+   +   + +     +  + L+ G  +E +EL + L    YK+ ++    G +   
Sbjct: 121 VISTERSLQPHLINKNLLIENKLDLQKGVRIEIQELANKLTLLGYKKDNVTSTEGFWSRR 180

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G+ I+I+P + E    R+  F N IE+I E+ P T + + ++  I+I      +  R  L
Sbjct: 181 GEIIDIYPVNNE-FPVRLEFFDNIIEKIREYDPQTQKTLESINNIEIIQAGVDLLIRDKL 239

Query: 393 NTAMK 397
           N   K
Sbjct: 240 NNLSK 244


>gi|260796379|ref|XP_002593182.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae]
 gi|229278406|gb|EEN49193.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae]
          Length = 614

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   ++    L  V TK+ A+ L  +LY     V  +H +    ER + +   R G 
Sbjct: 391 DLLNATGKEDSLTLTFVETKKGADSLEAFLYSEGYPVSSIHGDRSQREREDALMTFRTGV 450

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
             +LV   +   GLDIP    V   D  +D + ++    +T  +  +G A    N K
Sbjct: 451 TPILVATAVAARGLDIPNVKHVINFDLPSDIDEYVHRIGRTGRVGNLGLATSFFNDK 507


>gi|159482639|ref|XP_001699375.1| eukaryotic initiation factor [Chlamydomonas reinhardtii]
 gi|158272826|gb|EDO98621.1| eukaryotic initiation factor [Chlamydomonas reinhardtii]
          Length = 392

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + + N  V  MH ++   ER  I+ + R
Sbjct: 251 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMRQNNFTVASMHGDMVQKEREAIMGEFR 305

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 306 SGAARVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 351


>gi|153801601|ref|ZP_01956187.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|124122857|gb|EAY41600.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
          Length = 464

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVY--------DEINLAAQQG--LRILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y        D +    ++G   ++L+ + TK  A 
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L  YL E+ +    +H       R   + D + G+  +LV  ++   G+DIP+
Sbjct: 258 RLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQ 311


>gi|15677233|ref|NP_274386.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|7226614|gb|AAF41742.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|308389485|gb|ADO31805.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha710]
 gi|316984178|gb|EFV63156.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
 gi|325130443|gb|EGC53205.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           OX99.30304]
 gi|325136474|gb|EGC59080.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M0579]
 gi|325140412|gb|EGC62933.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           CU385]
 gi|325200011|gb|ADY95466.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
 gi|325201923|gb|ADY97377.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240149]
 gi|325208326|gb|ADZ03778.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           NZ-05/33]
          Length = 462

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|73748952|ref|YP_308191.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. CBDB1]
 gi|73660668|emb|CAI83275.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. CBDB1]
          Length = 740

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H  +   E+  I+R    G+ D+LV   ++  G+DIP   ++ +  AD+ G    
Sbjct: 563 RVALLHGRMNASEKETIMRHFSEGEMDILVSTPVIEVGIDIPNAAVMLVESADRFGL--- 619

Query: 668 KTSLIQTIGRAARNVNSKVILY 689
            + L Q  GR  R       ++
Sbjct: 620 -SQLHQFRGRVGRGTEQSYCMF 640


>gi|1230564|gb|AAB02546.1| Gu protein [Homo sapiens]
          Length = 801

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  QG R ++   TK+ A++L++    +    + +H ++   +R   ++  R G F VLV
Sbjct: 453 SGHQG-RTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFRNGSFGVLV 510

Query: 638 GINLLREGLDIPECGLV 654
             N+   GLDIPE  LV
Sbjct: 511 ATNVAARGLDIPEVDLV 527


>gi|261212630|ref|ZP_05926914.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341]
 gi|260837695|gb|EEX64372.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341]
 gi|327485418|gb|AEA79824.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae LMA3894-4]
          Length = 464

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVY--------DEINLAAQQG--LRILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y        D +    ++G   ++L+ + TK  A 
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L  YL E+ +    +H       R   + D + G+  +LV  ++   G+DIP+
Sbjct: 258 RLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQ 311


>gi|255527323|ref|ZP_05394201.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|255508970|gb|EET85332.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
          Length = 527

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E +  R   V  MH ++   +R+  +R  + G  D LV  ++   G+D+ +
Sbjct: 251 TKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGTLDFLVATDVAARGIDVDD 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              V   D  ++       S +  IGR  R  N + I Y+
Sbjct: 311 VSHVINYDLPQD-----MESYVHRIGRTGR-ANKEGIAYS 344


>gi|294893610|ref|XP_002774558.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239879951|gb|EER06374.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 639

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 558 PVEIRSARTQVE--DVYDEIN-LAAQQGLRILLTVLTKRM------------AEDLTEYL 602
           PV I   R      DV  E+  + A+  L  LL  L K               +++ EYL
Sbjct: 412 PVTINVGRAGAANLDVVQEVEYVKAESKLTYLLQCLQKTAPPVMVFCSDKASCDEVLEYL 471

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
             + +    +H  ++  ER +  R  + G  DVL+G ++  +GLD P    V   D  KE
Sbjct: 472 LLKGVGACAIHGGLEQSERHKSTRLFKSGAKDVLIGTDVASKGLDFPAIQHVINYDMPKE 531

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVIL---YADTITKSIQLAIDETTRRREKQLEH 714
             + +    I   GR  R   +   +     +T+   ++  ++E  +R    LEH
Sbjct: 532 --IENYVHRIGRTGRCGRTGVATTFINKSVDETVLLDLKAILEEAGQRVPPFLEH 584


>gi|229526174|ref|ZP_04415578.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis
           VL426]
 gi|229336332|gb|EEO01350.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis
           VL426]
          Length = 464

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVY--------DEINLAAQQG--LRILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y        D +    ++G   ++L+ + TK  A 
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L  YL E+ +    +H       R   + D + G+  +LV  ++   G+DIP+
Sbjct: 258 RLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQ 311


>gi|195492387|ref|XP_002093968.1| GE20460 [Drosophila yakuba]
 gi|194180069|gb|EDW93680.1| GE20460 [Drosophila yakuba]
          Length = 818

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 16/129 (12%)

Query: 567 QVEDVYDE-----------INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           Q+ DV DE            +++A+   + ++ V TK+  +++T  +  +  R   +H +
Sbjct: 377 QIVDVCDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGD 436

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
               ER  ++   R G+  +LV  ++   GLD+ +   V   D     +  +    +  I
Sbjct: 437 KSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYD-----YPSNSEDYVHRI 491

Query: 676 GRAARNVNS 684
           GR  R+ N+
Sbjct: 492 GRTGRSNNT 500


>gi|218962137|ref|YP_001741912.1| Putative ATP dependant helicase yprA [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730794|emb|CAO81706.1| Putative ATP dependant helicase yprA [Candidatus Cloacamonas
           acidaminovorans]
          Length = 863

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 10/138 (7%)

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL-YERNI--RVR 610
           +++P + IR + TQ  ++        Q  L+ LL   ++R  E +  YL  ++ I  +VR
Sbjct: 296 VIEPALGIRRSSTQ--EISSIAKSLLQTNLQALLFTGSRRSVELIFRYLTADQKIADKVR 353

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
              S     ER ++ RDLR G+  +++  N L  G+DI   GL AIL     G+  +  +
Sbjct: 354 SYRSGYLAEERRKVERDLREGEIGLVISTNALELGIDIG--GLDAIL---LNGYPGTICA 408

Query: 671 LIQTIGRAARNVNSKVIL 688
             Q  GRA R  N  + +
Sbjct: 409 TRQQAGRAGRKGNPSLCI 426


>gi|254286694|ref|ZP_04961649.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
 gi|150423278|gb|EDN15224.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
          Length = 464

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVY--------DEINLAAQQG--LRILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y        D +    ++G   ++L+ + TK  A 
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L  YL E+ +    +H       R   + D + G+  +LV  ++   G+DIP+
Sbjct: 258 RLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQ 311


>gi|117924600|ref|YP_865217.1| type III restriction enzyme, res subunit [Magnetococcus sp. MC-1]
 gi|117608356|gb|ABK43811.1| type III restriction enzyme, res subunit [Magnetococcus sp. MC-1]
          Length = 560

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A+++T+     ++    +H E+ T ER   +     G   V+V + +L EG D P    V
Sbjct: 249 AQNVTDAFNNADVEAVMVHGELTTAERKAALARFEKGSAMVVVNVAVLTEGYDHPPTSCV 308

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +L          K+++IQ +GR  R V+
Sbjct: 309 VLLRPSS-----YKSTMIQMVGRGLRTVD 332


>gi|60501849|gb|AAX22124.1| DEAD-box RNA-dependent helicase p68 [Carassius auratus]
          Length = 611

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  +DLT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 345 KTIIFVETKRRCDDLTRSMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVAS 404

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            GLD+ +   V   D     +  +    I  IGR AR+
Sbjct: 405 RGLDVEDIKFVINYD-----YPNNSEDYIHRIGRTARS 437


>gi|83645461|ref|YP_433896.1| transcription-repair coupling factor [Hahella chejuensis KCTC 2396]
 gi|83633504|gb|ABC29471.1| transcription-repair coupling factor [Hahella chejuensis KCTC 2396]
          Length = 1149

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 87/204 (42%), Gaps = 6/204 (2%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
             G    + +A+ ++  +R  +V+ P+   A QL S  K FF  +A +   +      P+
Sbjct: 20  AVGQSDAYILAQALKEQKRLLVVITPDMPSADQLESAVK-FFLGDAKKNESTPPILTLPD 78

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
                 DT+   +  I+++I  + +  T +    +  ++V   + +  +   E   +  +
Sbjct: 79  WETLPYDTFSPHQDIISQRIQTLHNLPTCA----SGLLIVPLSTIMVRLAPKEFVQRSTL 134

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L+ G  +      S L +  Y+  D     G F V G  ++IFP       +R+ +F  
Sbjct: 135 ILRKGQPLRIDSYRSELEQAGYRCVDTVYEHGEFAVRGSILDIFPMG-SKAPFRIDLFDE 193

Query: 356 DIEEISEFYPLTGQKIRNVETIKI 379
           ++E + +F P T +    V+ I +
Sbjct: 194 EVETLRQFDPETQRSASQVDEISL 217


>gi|74006722|ref|XP_861268.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 3 [Canis familiaris]
 gi|74006724|ref|XP_861300.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 4 [Canis familiaris]
 gi|74006730|ref|XP_861379.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 6 [Canis familiaris]
 gi|74006732|ref|XP_538003.2| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 1 [Canis familiaris]
          Length = 662

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 433 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 550

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 551 ---NITKDL 556


>gi|49484306|ref|YP_041530.1| helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282904748|ref|ZP_06312622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|282906426|ref|ZP_06314277.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282920258|ref|ZP_06327982.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus C427]
 gi|283958860|ref|ZP_06376305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|295428668|ref|ZP_06821294.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|81650664|sp|Q6GEZ3|Y2168_STAAR RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAR2168
 gi|49242435|emb|CAG41149.1| putative helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282316118|gb|EFB46499.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus C427]
 gi|282330376|gb|EFB59894.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282594781|gb|EFB99758.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|283789578|gb|EFC28401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|295127338|gb|EFG56978.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|315193240|gb|EFU23638.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 506

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 336


>gi|87196351|ref|NP_001347.3| ATP-dependent RNA helicase DDX3X isoform 1 [Homo sapiens]
 gi|3023628|sp|O00571|DDX3X_HUMAN RecName: Full=ATP-dependent RNA helicase DDX3X; AltName: Full=DEAD
           box protein 3, X-chromosomal; AltName: Full=DEAD box, X
           isoform; AltName: Full=Helicase-like protein 2;
           Short=HLP2
 gi|2148924|gb|AAB95637.1| helicase like protein 2 [Homo sapiens]
 gi|3523150|gb|AAC34298.1| DEAD box RNA helicase DDX3 [Homo sapiens]
 gi|15080078|gb|AAH11819.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Homo sapiens]
 gi|57209229|emb|CAI41416.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Homo sapiens]
 gi|119579806|gb|EAW59402.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579807|gb|EAW59403.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579808|gb|EAW59404.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579809|gb|EAW59405.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|158255742|dbj|BAF83842.1| unnamed protein product [Homo sapiens]
 gi|168277370|dbj|BAG10663.1| ATP-dependent RNA helicase DDX3X [synthetic construct]
          Length = 662

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 433 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 550

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 551 ---NITKDL 556


>gi|15925071|ref|NP_372605.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927656|ref|NP_375189.1| hypothetical protein SA1885 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283733|ref|NP_646821.1| hypothetical protein MW2004 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486874|ref|YP_044095.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650754|ref|YP_186888.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161548|ref|YP_494683.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195982|ref|YP_500795.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148268533|ref|YP_001247476.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394597|ref|YP_001317272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151222197|ref|YP_001333019.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156980397|ref|YP_001442656.1| hypothetical protein SAHV_2066 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510293|ref|YP_001575952.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253316240|ref|ZP_04839453.1| putative helicase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006870|ref|ZP_05145471.2| putative helicase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257793840|ref|ZP_05642819.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
 gi|258407008|ref|ZP_05680158.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
 gi|258422029|ref|ZP_05684946.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
 gi|258433601|ref|ZP_05688674.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
 gi|258440496|ref|ZP_05690666.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258445704|ref|ZP_05693882.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
 gi|258450158|ref|ZP_05698253.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
 gi|258453208|ref|ZP_05701199.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus A5948]
 gi|258453387|ref|ZP_05701369.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
 gi|262049250|ref|ZP_06022125.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
 gi|262052494|ref|ZP_06024692.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
 gi|269203717|ref|YP_003282986.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282895275|ref|ZP_06303488.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
 gi|282911647|ref|ZP_06319446.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282923070|ref|ZP_06330755.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|282929553|ref|ZP_06336950.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
 gi|284025116|ref|ZP_06379514.1| putative helicase [Staphylococcus aureus subsp. aureus 132]
 gi|294850566|ref|ZP_06791293.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|295407012|ref|ZP_06816814.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
 gi|296275711|ref|ZP_06858218.1| putative helicase [Staphylococcus aureus subsp. aureus MR1]
 gi|297246745|ref|ZP_06930562.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
 gi|81648913|sp|Q6G7M9|Y1985_STAAS RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAS1985
 gi|81694077|sp|Q5HEB9|Y2072_STAAC RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SACOL2072
 gi|81704263|sp|Q7A0D2|Y2004_STAAW RecName: Full=Probable DEAD-box ATP-dependent RNA helicase MW2004
 gi|81705333|sp|Q7A4G0|Y1885_STAAN RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SA1885
 gi|81781186|sp|Q99SH6|Y2081_STAAM RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAV2081
 gi|122538977|sp|Q2FWH5|Y2316_STAA8 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SAOUHSC_02316
 gi|123484971|sp|Q2FF45|Y2037_STAA3 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SAUSA300_2037
 gi|13701876|dbj|BAB43168.1| SA1885 [Staphylococcus aureus subsp. aureus N315]
 gi|14247854|dbj|BAB58243.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21205175|dbj|BAB95869.1| MW2004 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245317|emb|CAG43792.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284940|gb|AAW37034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus COL]
 gi|87127522|gb|ABD22036.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203540|gb|ABD31350.1| ATP-dependent RNA helicase, DEAD box family, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147741602|gb|ABQ49900.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149947049|gb|ABR52985.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150374997|dbj|BAF68257.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156722532|dbj|BAF78949.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160369102|gb|ABX30073.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257787812|gb|EEV26152.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
 gi|257841341|gb|EEV65785.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
 gi|257841929|gb|EEV66361.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
 gi|257849332|gb|EEV73311.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
 gi|257852565|gb|EEV76483.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257855543|gb|EEV78480.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
 gi|257856632|gb|EEV79538.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
 gi|257859154|gb|EEV82011.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus A5948]
 gi|257864368|gb|EEV87114.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
 gi|259159615|gb|EEW44661.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
 gi|259162615|gb|EEW47182.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
 gi|262076007|gb|ACY11980.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269941681|emb|CBI50088.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
 gi|282324412|gb|EFB54725.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282589032|gb|EFB94136.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
 gi|282593261|gb|EFB98258.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|282762348|gb|EFC02495.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
 gi|285817746|gb|ADC38233.1| Cold-shock DEAD-box protein A [Staphylococcus aureus 04-02981]
 gi|294822586|gb|EFG39028.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|294968037|gb|EFG44064.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
 gi|297176405|gb|EFH35677.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
 gi|312830433|emb|CBX35275.1| DEAD/DEAH box helicase family protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315128752|gb|EFT84752.1| putative helicase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315196987|gb|EFU27329.1| putative helicase [Staphylococcus aureus subsp. aureus CGS01]
 gi|323439203|gb|EGA96930.1| ATP-dependent RNA helicase [Staphylococcus aureus O11]
 gi|323442419|gb|EGB00048.1| ATP-dependent RNA helicase [Staphylococcus aureus O46]
 gi|329314766|gb|AEB89179.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329724041|gb|EGG60565.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329726361|gb|EGG62829.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329729332|gb|EGG65740.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 506

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 336


>gi|328884859|emb|CCA58098.1| putative ATP-dependent RNA helicase [Streptomyces venezuelae ATCC
           10712]
          Length = 874

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A D+ E L  R      +H ++    R + +R  R GK DVLV  ++   G+D+
Sbjct: 235 TKRTAADIAEQLERRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDV 292


>gi|328849915|gb|EGF99087.1| hypothetical protein MELLADRAFT_50777 [Melampsora larici-populina
           98AG31]
          Length = 395

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LTE + E N  V  MH ++   ER  I+ + R
Sbjct: 254 DLYDTLTIT-----QAVIFCNTRRKVDWLTEKMREANFTVSSMHGDMPQKERDTIMGEFR 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 309 NGTSRVLITTDVWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 354


>gi|330808512|ref|YP_004352974.1| transcription-repair coupling factor [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376620|gb|AEA67970.1| Transcription-repair coupling factor [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1149

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 58/301 (19%), Positives = 120/301 (39%), Gaps = 43/301 (14%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   A +R  +++  +   A +L  E   F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +   +   
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELSHG----------VLVVPITTALHRLAPTQFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L IG  ++ +++ + L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMG-SKLPYRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P   + I  V++I++     +    P    A+   K   + R     
Sbjct: 184 LFDDEIETLRTFDPENQRSIDKVQSIRLLPAKEF----PLQKDAVTRFKARFRERF---- 235

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                     ++ R     + L +  +   IE Y          E   TLF+Y+P+D+ +
Sbjct: 236 ---------DVDFRRCPIFQDLSSGITPAGIEYYLPLFF-----EETSTLFDYLPQDTQV 281

Query: 472 F 472
           F
Sbjct: 282 F 282



 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 13/122 (10%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VL+   ++  G+D+P  
Sbjct: 825 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 882

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
             + I  ADK G       L Q  GR  R+ +     YA  +T   Q    + T   EK+
Sbjct: 883 NTIIIERADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPPRQ----QITPDAEKR 931

Query: 712 LE 713
           LE
Sbjct: 932 LE 933


>gi|319789141|ref|YP_004150774.1| ATP-dependent DNA helicase RecG [Thermovibrio ammonificans HB-1]
 gi|317113643|gb|ADU96133.1| ATP-dependent DNA helicase RecG [Thermovibrio ammonificans HB-1]
          Length = 817

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H ++K  E+ +++   + G+F VLV   ++  G+D+PE  ++ I  A++ G    
Sbjct: 637 RVGLLHGKMKQEEKDKVMEAFKRGEFQVLVSTTVIEVGVDVPEATVMVIEHAERFGL--- 693

Query: 668 KTSLIQTIGRAARN 681
              L Q  GR  R 
Sbjct: 694 -AQLHQLRGRVGRG 706


>gi|299470460|emb|CBN78452.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 815

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N RV   HS++K LE  +++    LG+ D+L+  +++  G+D+P    + + D+   G  
Sbjct: 350 NARVAVGHSKIKNLE--DVVLQFTLGRGDILLATSIIENGIDMPNVNSIVVQDSHMFGL- 406

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R+
Sbjct: 407 ---SQLYQMRGRVGRS 419


>gi|296194575|ref|XP_002745046.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Callithrix jacchus]
          Length = 704

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 522 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRSGKCPVLVATSVAA 581

Query: 644 EGLDI 648
            GLDI
Sbjct: 582 RGLDI 586


>gi|291563511|emb|CBL42327.1| ATP-dependent DNA helicase RecG [butyrate-producing bacterium
           SS3/4]
          Length = 684

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            IRV Y+H ++K  E+ +I+ +   G+  VLV   ++  G+++P   ++ I +A++ G  
Sbjct: 502 GIRVEYLHGKMKGKEKNKIMEEFAAGEIQVLVSTTVIEVGVNVPNATVMMIENAERFGL- 560

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R 
Sbjct: 561 ---AQLHQLRGRVGRG 573


>gi|261393122|emb|CAX50727.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis 8013]
          Length = 680

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 8/100 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++     G  +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPELNIGL--VHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
            A++ G       L Q  GR  R       V+L+A+ +++
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPLSE 591


>gi|229522888|ref|ZP_04412302.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80]
 gi|229340105|gb|EEO05113.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80]
          Length = 464

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVY--------DEINLAAQQG--LRILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y        D +    ++G   ++L+ + TK  A 
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L  YL E+ +    +H       R   + D + G+  +LV  ++   G+DIP+
Sbjct: 258 RLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQ 311


>gi|221141602|ref|ZP_03566095.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|302751962|gb|ADL66139.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. JKD6008]
          Length = 506

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 336


>gi|167527009|ref|XP_001747837.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773586|gb|EDQ87224.1| predicted protein [Monosiga brevicollis MX1]
          Length = 532

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D I+ A+ + L  L+ V TK+ A+ L  YL  +      +H +    ER E + D R 
Sbjct: 405 LLDLISAASSEDL-FLIFVETKKAADALEYYLTMQGRPATSIHGDRTQYEREEALADFRA 463

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILD 658
           G+  +LV   +   GLDIP    V   D
Sbjct: 464 GRRPILVATAVAARGLDIPNVKHVINFD 491


>gi|145633450|ref|ZP_01789180.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           3655]
 gi|144986013|gb|EDJ92615.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           3655]
          Length = 693

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+ L   NI +  +H  +K  E+ +++   +  + D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLTKALPMLNIGL--VHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           I +A++ G     + L Q  GR  R   +   V++Y   + K  Q
Sbjct: 567 IENAERLGL----SQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQ 607


>gi|109089499|ref|XP_001110939.1| PREDICTED: nucleolar RNA helicase 2-like isoform 3 [Macaca mulatta]
          Length = 783

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  QG R ++   TK+ A++L++    +    + +H ++   +R   ++  R G F VLV
Sbjct: 435 SGHQG-RTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFRNGSFGVLV 492

Query: 638 GINLLREGLDIPECGLV 654
             N+   GLDIPE  LV
Sbjct: 493 ATNVAARGLDIPEVDLV 509


>gi|47206563|emb|CAF94489.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 490

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 8/113 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++Y  I +A     + ++   T++ A  L   L   N +V  +  E++  +R  +I   R
Sbjct: 338 NIYGAITIA-----QAIIFCHTRKTAGWLAGELSRENHQVAVLSGEMQVEQRAAVIERFR 392

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            GK  VLV  N+   G+D+ +  +V   D   DK+G   ++T L   IGR  R
Sbjct: 393 DGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYL-HRIGRTGR 444


>gi|85115638|ref|XP_964910.1| hypothetical protein NCU09093 [Neurospora crassa OR74A]
 gi|28926707|gb|EAA35674.1| hypothetical protein NCU09093 [Neurospora crassa OR74A]
          Length = 593

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 36/65 (55%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V +KR A++L ++L+ + +    MHS+    ER   +R  R G+  VL+   +  
Sbjct: 400 RTIIFVNSKRAADELDDFLFNKGVPCVSMHSDRTQREREAAMRAFRAGRSPVLITTAVTA 459

Query: 644 EGLDI 648
            G+D+
Sbjct: 460 RGIDV 464


>gi|309379638|emb|CBX21809.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 680

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++     G+ +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPELNIGL--VHGRMKAAEKAEVMARFSSGELNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|301789077|ref|XP_002929955.1| PREDICTED: probable ATP-dependent RNA helicase DDX53-like
           [Ailuropoda melanoleuca]
          Length = 590

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++ V  + +A+DL+  L  + I V+ +H +    +R   + D R GK  VL+  +L  
Sbjct: 433 KVIVFVRRRLVADDLSSDLSIQGITVQSLHGDRDQHDRERALEDFRSGKVKVLIATDLAS 492

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     F R+    +  +GR  R
Sbjct: 493 RGLDVNDITHVYNYD-----FPRNIEEYVHRVGRTGR 524


>gi|289617824|emb|CBI55401.1| unnamed protein product [Sordaria macrospora]
          Length = 1039

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  ++IE I+  + G ++VLV  ++  EGLDI +  L+   DA       S   ++Q +
Sbjct: 565 MKQKQQIETIQKFKDGVYNVLVATSIGEEGLDIGQVDLIVCYDASA-----SPIRMLQRM 619

Query: 676 GRAARNVNSKVIL 688
           GR  R     ++L
Sbjct: 620 GRTGRKRAGNIVL 632


>gi|262164855|ref|ZP_06032593.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
 gi|262027235|gb|EEY45902.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
          Length = 643

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 309 LDVPR--ITHVFNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQIRMLRTIERVT 364

Query: 706 RR--REKQLEHNKK 717
           R    E QL H  K
Sbjct: 365 RSSMEEIQLPHRDK 378


>gi|260101410|ref|ZP_05751647.1| DNA helicase RecG [Lactobacillus helveticus DSM 20075]
 gi|260084750|gb|EEW68870.1| DNA helicase RecG [Lactobacillus helveticus DSM 20075]
          Length = 679

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 560 EIRSART--QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T   V  ++  I    Q  L +   +L  +  + + E L    +RV  +    K
Sbjct: 287 DVGSGKTVVAVYAIFAAITAGYQVALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 346

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           TLER EI R+L  G  +V++G + L++E +   + GLV I
Sbjct: 347 TLERREIYRELMDGTINVMIGTHALIQENVIFKKLGLVII 386



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 17/188 (9%)

Query: 522 RPTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           +P  + ++ATP   +  L     + V +I        P +      TQ++DVY ++    
Sbjct: 406 QPDILAMTATPIPRTLALTVYGDMTVSEIHHMPAGRKPIISSWKTSTQMKDVYQKMQDQL 465

Query: 580 QQGLRI-----LLT---VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLR 629
            QG +I     L+T    L  + AE+L   L     + +V  +H ++   ++ EI+    
Sbjct: 466 DQGFQIYAVTPLITESETLDLKNAEELHAKLSHDFPDQKVVLLHGQMPGPKKDEIMIAFA 525

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVIL 688
            G+ ++LV  +++  G+D+    ++ I +AD+ G     + L Q  GR  R    S  + 
Sbjct: 526 SGEINILVTTSVIEVGVDVANANMMVIYNADRFGL----SQLHQLRGRIGRGKTQSYCVF 581

Query: 689 YADTITKS 696
            AD  T S
Sbjct: 582 VADPKTDS 589


>gi|241667544|ref|ZP_04755122.1| DNA/RNA helicase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876089|ref|ZP_05248799.1| DNA/RNA helicase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842110|gb|EET20524.1| DNA/RNA helicase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 912

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 7/121 (5%)

Query: 567 QVEDVYDEINLAAQQG-LR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           +VE + D+ N     G LR  L+ V     A  L   L +R ++ + + S+     R E 
Sbjct: 394 RVEHIIDKANFYGYSGKLRSALMFVSNIDEAVQLATKLSQRGVKAKALSSQDSERVRQET 453

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I +L  G  +++V +++  EG+DIP    V +L        +S    IQ +GR  R   S
Sbjct: 454 IGELESGLLEIIVTVDIFNEGIDIPCVNQVILLRPT-----QSAIVYIQQLGRGLRKYKS 508

Query: 685 K 685
           K
Sbjct: 509 K 509


>gi|224048550|ref|XP_002190979.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 53
           [Taeniopygia guttata]
          Length = 729

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++ V  K  A+DL      + I V+ +H   +  +R + + D + GK  +LV  +L  
Sbjct: 572 KVIIFVGKKLTADDLASDFGIQGIPVQSLHGNREQCDREQALDDFKKGKVRILVATDLAS 631

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     F R+    +  +GR  R
Sbjct: 632 RGLDVHDITHVFNFD-----FPRNIEEYVHRVGRTGR 663


>gi|195109134|ref|XP_001999145.1| GI24348 [Drosophila mojavensis]
 gi|193915739|gb|EDW14606.1| GI24348 [Drosophila mojavensis]
          Length = 2256

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 5/74 (6%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           ++++  R+   +VL+G ++L EG+D+P+C LV   D        +  S +Q  GRA    
Sbjct: 551 DVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVIRWDPPT-----TYRSYVQCKGRARAAP 605

Query: 683 NSKVILYADTITKS 696
              ++L A T   S
Sbjct: 606 AYHIMLVAPTYDPS 619


>gi|134096391|ref|YP_001101466.1| putative cold-shock DeaD box ATP-dependent RNA helicase (partial
           match) [Herminiimonas arsenicoxydans]
 gi|133740294|emb|CAL63345.1| putative ATP-dependent RNA helicase DeaD-like [Herminiimonas
           arsenicoxydans]
          Length = 826

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 8/125 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L   L  R      ++ +++  +R   I+ L+ GK D+LV  ++   
Sbjct: 249 MIIFARTKLGTEELAGKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVATDVAAR 308

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E +    T  I   GRA R  + + IL+     +++  AI+
Sbjct: 309 GLDVERISHVINYDVPHDPESY----THRIGRTGRAGR--SGEAILFIAPRERNLLKAIE 362

Query: 703 ETTRR 707
             TR+
Sbjct: 363 RATRQ 367


>gi|67423403|dbj|BAD99522.1| VASA RNA helicase [Daphnia magna]
          Length = 775

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 9/121 (7%)

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R  RT++ +V  ++  A     + ++ V +K+ A+ +  +L   N++   +H +    +R
Sbjct: 579 RDKRTKLMEVLQDLGDA-----KTIVFVDSKKTADFVAAFLCNNNLQSTSIHGDRLQSQR 633

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGR 677
            + +RD + G  ++LV  N+   GLDI     V   D   D E ++    +T  +  IG+
Sbjct: 634 EQALRDFKNGVRNILVATNVAARGLDIAGVNYVVNYDLPTDIEEYVHRVGRTGRVGNIGK 693

Query: 678 A 678
           +
Sbjct: 694 S 694


>gi|88192202|pdb|2B2N|A Chain A, Structure Of Transcription-Repair Coupling Factor
 gi|88192203|pdb|2B2N|B Chain B, Structure Of Transcription-Repair Coupling Factor
          Length = 344

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 231 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282


>gi|332218192|ref|XP_003258243.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Nomascus leucogenys]
          Length = 783

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  QG R ++   TK+ A++L++    +    + +H ++   +R   ++  R G F VLV
Sbjct: 435 SGHQG-RTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFRNGSFGVLV 492

Query: 638 GINLLREGLDIPECGLV 654
             N+   GLDIPE  LV
Sbjct: 493 ATNVAARGLDIPEVDLV 509


>gi|328885306|emb|CCA58545.1| ATP-dependent DNA helicase RecG [Streptomyces venezuelae ATCC
           10712]
          Length = 730

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  +   ++ +++R    G+ DVLV   ++  G+++P    + I+DAD+ G  
Sbjct: 546 GLRIAVLHGRMHPDDKDDVMRRFAAGELDVLVATTVIEVGVNVPNATAMVIMDADRFGV- 604

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R     + L
Sbjct: 605 ---SQLHQLRGRVGRGSAPGLCL 624


>gi|317013293|gb|ADU83901.1| ATP-dependent DNA helicase RecG [Helicobacter pylori Lithuania75]
          Length = 623

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFT-MAKVIE 190
           ++S+ +  F     +  + DQ  AI ++   + S    + L++G  G GKT   +A ++ 
Sbjct: 216 DNSERLKAFITSLPFKLTHDQQNAIKEIQSDLTSSIACKRLIIGDVGCGKTMVILASMVL 275

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           A     ++MAP  ILA QLY+E   F P
Sbjct: 276 AYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|311068092|ref|YP_003973015.1| primosome assembly protein PriA [Bacillus atrophaeus 1942]
 gi|310868609|gb|ADP32084.1| primosome assembly protein PriA [Bacillus atrophaeus 1942]
          Length = 805

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 15/102 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+R+ E+LT+ L   N RV  M  +V T  R     +++     GK D+L+G  ++ +GL
Sbjct: 565 TQRVEEELTKVL--PNARVIRM--DVDTTSRKGSHEKLLSAFGEGKADILLGTQMIAKGL 620

Query: 647 DIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           D P   LV +L AD    +       ++   L Q  GRA R+
Sbjct: 621 DFPNVTLVGVLSADTTLHIPDFRSAEKTFQLLTQVSGRAGRH 662


>gi|291407356|ref|XP_002719895.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3
           [Oryctolagus cuniculus]
          Length = 661

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 10/120 (8%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 433 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAA-----RNVN 683
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A      RNVN
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNVN 551


>gi|260584631|ref|ZP_05852377.1| ATP-dependent DNA helicase RecG [Granulicatella elegans ATCC
           700633]
 gi|260157654|gb|EEW92724.1| ATP-dependent DNA helicase RecG [Granulicatella elegans ATCC
           700633]
          Length = 683

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           +E  + V  +H  +K+ E+  ++   +     VLV   ++  G+D+P   ++ ILDAD+ 
Sbjct: 500 FENRLSVGLLHGRLKSDEKESVMTAFQKNDVQVLVSTTVIEVGVDVPNATVMVILDADRF 559

Query: 663 GFLRSKTSLIQTIGRAARNVN-SKVILYA 690
           G       L Q  GR  R  + S  IL A
Sbjct: 560 GL----AQLHQLRGRVGRGEHASTCILIA 584


>gi|195952677|ref|YP_002120967.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932289|gb|ACG56989.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 364

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 41/71 (57%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V TK+ A+DL   L ++ IR + +H ++   +R + +   + G   +L+  ++  
Sbjct: 242 KMLIFVKTKKDAKDLFFLLTKKGIRAQALHGDLTQRQREKALSAFKSGAVSILIATDVAA 301

Query: 644 EGLDIPECGLV 654
            GLDI + G+V
Sbjct: 302 RGLDIKDVGVV 312


>gi|220927762|ref|YP_002504671.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
 gi|219998090|gb|ACL74691.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
           H10]
          Length = 542

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   + +  +L ++    R +H ++   +R+  I+  + GKF +LV  ++   G+ I +
Sbjct: 250 TKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILVATDVAARGIHIED 309

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D   +     K + +  IGR  R
Sbjct: 310 LSLVINYDVPND-----KDNYVHRIGRTGR 334


>gi|154250084|ref|YP_001410909.1| type III restriction protein res subunit [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154020|gb|ABS61252.1| type III restriction protein res subunit [Fervidobacterium nodosum
           Rt17-B1]
          Length = 848

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK---TLERIEIIRDLRLGKFDVLVGIN 640
           R +   +++  AE + +Y  +  +    ++S  +    L R E I  L+  + DV+  ++
Sbjct: 468 RAIGFCVSRNHAEYMADYFNKNGVNACAVYSGEQGRNALPRWEAIEKLKNREIDVIFTVD 527

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +  EG+DIPE  +V  L   +     S T  IQ +GR  R    K  L
Sbjct: 528 VFNEGVDIPEIEMVMFLRPTE-----STTVFIQQLGRGLRKAKGKKYL 570


>gi|115468814|ref|NP_001058006.1| Os06g0602400 [Oryza sativa Japonica Group]
 gi|113596046|dbj|BAF19920.1| Os06g0602400 [Oryza sativa Japonica Group]
          Length = 484

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L  +LY +      +H +    ER   +R  + G   ++V  ++   G
Sbjct: 237 LVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRG 296

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LD+P    V   D  K     S    +  IGR  R
Sbjct: 297 LDVPNVAHVINYDLPK-----SIEDYVHRIGRTGR 326


>gi|45382259|ref|NP_990158.1| probable ATP-dependent RNA helicase DDX5 [Gallus gallus]
 gi|5114446|gb|AAD40318.1|AF158370_1 DEAD-box RNA helicase [Gallus gallus]
          Length = 595

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  +DLT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 331 KTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 390

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 391 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 426


>gi|218768385|ref|YP_002342897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
 gi|121052393|emb|CAM08725.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
 gi|319410631|emb|CBY91000.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
           2594]
          Length = 462

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|147669719|ref|YP_001214537.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. BAV1]
 gi|146270667|gb|ABQ17659.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. BAV1]
          Length = 818

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H  +   E+  I+R    G+ D+LV   ++  G+DIP   ++ +  AD+ G    
Sbjct: 641 RVALLHGRMNASEKETIMRHFSEGEMDILVSTPVIEVGIDIPNAAVMLVESADRFGL--- 697

Query: 668 KTSLIQTIGRAARNVNSKVILY 689
            + L Q  GR  R       ++
Sbjct: 698 -SQLHQFRGRVGRGTEQSYCMF 718


>gi|67624743|ref|XP_668654.1| DEAD box polypeptide, Y chromosome-related [Cryptosporidium hominis
           TU502]
 gi|54659828|gb|EAL38390.1| DEAD box polypeptide, Y chromosome-related [Cryptosporidium
           hominis]
          Length = 702

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +GL ++  V  KR A+ + ++L ++N     +H +    ER   +R  R G+  +L
Sbjct: 455 LEQGEGLTVVF-VEMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALRLFRSGQRPIL 513

Query: 637 VGINLLREGLDIPECGLVAILD 658
           V  ++   GLDIP    V  LD
Sbjct: 514 VATDVAARGLDIPNITHVINLD 535


>gi|326423778|ref|NP_759830.2| ATP-dependent DNA helicase RecG [Vibrio vulnificus CMCP6]
 gi|319999140|gb|AAO09357.2| ATP-dependent DNA helicase RecG [Vibrio vulnificus CMCP6]
          Length = 693

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 8/114 (7%)

Query: 589 VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           VL  + A D  E L  +  ++R+  +H  +K  E+  +++  +  +  +LV   ++  G+
Sbjct: 498 VLEAQAAADTAEELQRKLPDVRIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGV 557

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKSIQ 698
           D+P   L+ I + ++ G       L Q  GR  R    +  V+LY   ++K+ Q
Sbjct: 558 DVPNASLMIIENPERLGL----AQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQ 607


>gi|303233282|ref|ZP_07319954.1| putative ATP-dependent DNA helicase RecG [Atopobium vaginae
           PB189-T1-4]
 gi|302480672|gb|EFL43760.1| putative ATP-dependent DNA helicase RecG [Atopobium vaginae
           PB189-T1-4]
          Length = 775

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+  +   +KT ++  ++   R  + DVLV   ++  G+D+P    + ILDAD+ G    
Sbjct: 588 RIGLLTGALKTEDKERVMEAFRAHEIDVLVATTIVEVGVDVPNANTMLILDADRFGL--- 644

Query: 668 KTSLIQTIGRAARN 681
             +L Q  GR  R 
Sbjct: 645 -ATLHQLRGRVGRG 657


>gi|257426220|ref|ZP_05602635.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428878|ref|ZP_05605272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257431487|ref|ZP_05607860.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257434197|ref|ZP_05610547.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257437110|ref|ZP_05613150.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282914927|ref|ZP_06322707.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|282925469|ref|ZP_06333123.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus C101]
 gi|293508999|ref|ZP_06667786.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510911|ref|ZP_06669610.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293547513|ref|ZP_06672188.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257270925|gb|EEV03098.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257274220|gb|EEV05737.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257277728|gb|EEV08398.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257280836|gb|EEV10981.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257283503|gb|EEV13630.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282312870|gb|EFB43271.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus C101]
 gi|282321130|gb|EFB51461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|290919633|gb|EFD96706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291094703|gb|EFE24975.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466196|gb|EFF08723.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus M809]
          Length = 506

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 336


>gi|229845419|ref|ZP_04465549.1| ATP-dependent DNA helicase [Haemophilus influenzae 6P18H1]
 gi|229811615|gb|EEP47314.1| ATP-dependent DNA helicase [Haemophilus influenzae 6P18H1]
          Length = 693

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+ L   NI +  +H  +K  E+ +++   +  + D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLTKALPMLNIGL--VHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           I +A++ G     + L Q  GR  R   +   V++Y   + K  Q
Sbjct: 567 IENAERLGL----SQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQ 607


>gi|242008404|ref|XP_002424996.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212508625|gb|EEB12258.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 684

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 9/103 (8%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V T++ A+ L EYL+ +   V  +H E    ER + +R  R G+  +LV   +   G
Sbjct: 468 LVFVETRKGADCLEEYLHYQGYPVSCIHGERSQREREDALRRFRSGETPILVATAVAARG 527

Query: 646 LDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDI     V   D  +D E +       +  IGR  R  N  V
Sbjct: 528 LDISHVTHVINFDLPSDIEEY-------VHRIGRTGRMGNLGV 563


>gi|195434729|ref|XP_002065355.1| GK14711 [Drosophila willistoni]
 gi|194161440|gb|EDW76341.1| GK14711 [Drosophila willistoni]
          Length = 425

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++        ++   T+R  + LT+ +   N  V  MH +++  +R  I++  R
Sbjct: 284 DLYDTLSITQS-----VIFCNTRRKVDQLTQEMSNHNFTVSAMHGDMEQRDREVIMKQFR 338

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 339 SGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 376


>gi|158294546|ref|XP_315671.4| AGAP005652-PA [Anopheles gambiae str. PEST]
 gi|157015613|gb|EAA11703.5| AGAP005652-PA [Anopheles gambiae str. PEST]
          Length = 728

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           ++A+   + ++ V TKR  +D+T  +     R   +H +    ER  ++   R G+  +L
Sbjct: 353 ISAEPDTKTIIFVETKRRVDDITRIVNRNGWRAVAIHGDKSQQERDYVLSTFRNGRQGIL 412

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           V  ++   GLD+ +   V   D     +  +    +  IGR  R+ N+
Sbjct: 413 VATDVAARGLDVEDVKFVINYD-----YPSNSEDYVHRIGRTGRSNNT 455


>gi|148378652|ref|YP_001253193.1| helicase [Clostridium botulinum A str. ATCC 3502]
 gi|153930789|ref|YP_001383035.1| restriction/helicase domain-containing protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153934536|ref|YP_001386584.1| restriction/helicase domain-containing protein [Clostridium
           botulinum A str. Hall]
 gi|148288136|emb|CAL82204.1| putative helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152926833|gb|ABS32333.1| restriction/helicase domain protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|152930450|gb|ABS35949.1| restriction/helicase domain protein [Clostridium botulinum A str.
           Hall]
          Length = 988

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 17/136 (12%)

Query: 555 VDPPVEIRS--ARTQVEDVYDEINLAAQQGLRI--LLTVLTKRMAEDLTEYLYERNIRVR 610
           +D  +E +   A  +V+ + D+IN     G R+  L+    K+ A++L++    +  +  
Sbjct: 437 LDDKIEFKYLVAEERVKHIIDKINFYGYCGERVKGLIFCSDKKEAKELSDIFNTKGYKTV 496

Query: 611 YMHSEV------KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            +  E       K +ER+E  +D  L   D +  +++  EG+DIP    V +L   K   
Sbjct: 497 ALTGESLQEEREKAIERLE--QDETLNSLDYIFTVDIFNEGVDIPSVNQVVMLRPTK--- 551

Query: 665 LRSKTSLIQTIGRAAR 680
             S    +Q +GR  R
Sbjct: 552 --SSIIFVQQLGRGLR 565


>gi|302511351|ref|XP_003017627.1| hypothetical protein ARB_04509 [Arthroderma benhamiae CBS 112371]
 gi|291181198|gb|EFE36982.1| hypothetical protein ARB_04509 [Arthroderma benhamiae CBS 112371]
          Length = 1178

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++EII+  + G ++ +V  ++  EGLDI E  L+   D+       S   ++Q +GR  
Sbjct: 770 KQLEIIKKFKEGTYNTIVATSIGEEGLDIGEVDLIICYDSSA-----SPIRMLQRMGRTG 824

Query: 680 RNVNSKVIL 688
           R    KV+L
Sbjct: 825 RKRMGKVVL 833


>gi|283471297|emb|CAQ50508.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 506

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++LV  ++   GLDI  
Sbjct: 249 TKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 336


>gi|261392357|emb|CAX49897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
 gi|325204361|gb|ADY99814.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240355]
          Length = 462

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|237738008|ref|ZP_04568489.1| ATP-dependent DNA helicase recG [Fusobacterium mortiferum ATCC
           9817]
 gi|229419888|gb|EEO34935.1| ATP-dependent DNA helicase recG [Fusobacterium mortiferum ATCC
           9817]
          Length = 684

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 99/252 (39%), Gaps = 37/252 (14%)

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR------GDFHRKATLAEYGF 502
           LTG   G+    L E I    +  V  +H  I +    +R       + HR   L     
Sbjct: 347 LTGSFTGKKKQRLLEDIANGDVGIVIGTHALIEESVVFHRLGMIIIDEQHRFGVLQRKAL 406

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE-QCQGIIVEQIIRPTGLVDPPVEI 561
           R    + N               +V+SATP    L     G +   +I        P+  
Sbjct: 407 RDKGVLAN--------------LVVMSATPIPRSLALSIYGDLDVSVIDELPPGRKPIRT 452

Query: 562 RSART--QVEDVYDEINLAAQQGLRILLTV--------LTKRMAEDLTEYL--YERNIRV 609
           +   T  ++E +YD I+    QG +             L+ +   +L E +  +  N ++
Sbjct: 453 KWIATDEEIETMYDFIDKKLSQGRQAYFIAPLIEESEKLSAKSTAELMEEVEKFLPNYKI 512

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H ++K  E+ EI+   +  + D+LV   ++  G+D+P   ++ I +A++ G     +
Sbjct: 513 GVLHGKMKNSEKDEIMSRFKNKELDILVSTTVIEVGVDVPNSSIIVINNAERFGL----S 568

Query: 670 SLIQTIGRAARN 681
           +L Q  GR  R 
Sbjct: 569 ALHQLRGRVGRG 580


>gi|221640075|ref|YP_002526337.1| DNA helicase [Rhodobacter sphaeroides KD131]
 gi|221160856|gb|ACM01836.1| DNA helicase [Rhodobacter sphaeroides KD131]
          Length = 1695

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 17/170 (10%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+   E + E+L  + I   + H+ +   ++  +    R+G   V+   N    G+D P+
Sbjct: 523 TRAETERIAEFLKRQGIAAEHFHAGLTPDDKQTVQERFRVGDLRVIAATNAFGMGIDKPD 582

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN---VNSKVILYADTITKSIQLAIDETTRR 707
             LV  L AD  G L    + +Q  GRA R+    +  ++ ++D + +   L       R
Sbjct: 583 IRLV--LHADIPGSLE---NYLQEAGRAGRDRQPADCVLLYHSDDVERQFTLTARSRLER 637

Query: 708 RE-----KQLEHNKKHNINPQSVKEKIMEVI----DPILLEDAATTNISI 748
            E     K L    +H  N   V     E++    D   + D+AT +  +
Sbjct: 638 HEIGAILKALRRIDEHTRNSGKVVASAGEIVREEKDRAFVRDSATDDTRV 687


>gi|153829646|ref|ZP_01982313.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
 gi|148874874|gb|EDL73009.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
          Length = 464

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVY--------DEINLAAQQG--LRILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y        D +    ++G   ++L+ + TK  A 
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L  YL E+ +    +H       R   + D + G+  +LV  ++   G+DIP+
Sbjct: 258 RLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQ 311


>gi|148975750|ref|ZP_01812581.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
 gi|145964823|gb|EDK30075.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
          Length = 551

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 4/128 (3%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TK  A  L  +L E+ I    +H       R + + + + GK  VLV  ++  
Sbjct: 245 QVLVFSKTKHGANKLARFLDEQGITAAPIHGNKSQGARTKALENFKTGKVRVLVATDIAA 304

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK--SIQLAI 701
            G+DIP+  L  +++ D           I   GRA     +  ++ AD + +   I+  I
Sbjct: 305 RGIDIPQ--LPQVVNFDLPHVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIERLI 362

Query: 702 DETTRRRE 709
            +   RRE
Sbjct: 363 QQVLERRE 370


>gi|74006744|ref|XP_861568.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 12 [Canis familiaris]
          Length = 653

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 424 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 482

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 483 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 541

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 542 ---NITKDL 547


>gi|4126714|dbj|BAA36710.1| DEAD-Box Protein [Ciona intestinalis]
          Length = 669

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 8/125 (6%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE +  R+++ ++  ++N       R L+ V TKR A+ L   L + +     +H +   
Sbjct: 447 VEWKDKRSKLLELIADVNETKS---RTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQ 503

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            +R + +RD +L    +LV  ++   GLDIP+   V   D  +E         +  IGR 
Sbjct: 504 QDREQALRDFKLAVCPILVATSVAARGLDIPKVEHVINYDMPRE-----IDEYVHRIGRT 558

Query: 679 ARNVN 683
            R  N
Sbjct: 559 GRCGN 563


>gi|145219994|ref|YP_001130703.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206158|gb|ABP37201.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeovibrioides DSM
           265]
          Length = 598

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 8/160 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK M  ++ E L  R      ++ ++   +R   I  L+ G  ++++  ++   
Sbjct: 252 MIIFVRTKTMTLEIAEKLQARGYSAAALNGDMVQQQRERTIDQLKSGALNIVIATDVAAR 311

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D  +D E ++      I   GRA R+   + IL+     +++  +I+
Sbjct: 312 GLDVERISHVINYDIPSDTESYVHR----IGRTGRAGRS--GEAILFVSPRERNMLSSIE 365

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
             TR++ + +E      IN + + +    + D I  ED A
Sbjct: 366 RATRKKIELMELPSTEIINDKRIAKFKQRITDTIAAEDLA 405


>gi|326483398|gb|EGE07408.1| helicase domain-containing protein [Trichophyton equinum CBS
           127.97]
          Length = 1176

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++EII+  + G ++ +V  ++  EGLDI E  L+   D+       S   ++Q +GR  
Sbjct: 767 KQLEIIKKFKEGTYNTIVATSIGEEGLDIGEVDLIICYDSSA-----SPIRMLQRMGRTG 821

Query: 680 RNVNSKVIL 688
           R    KV+L
Sbjct: 822 RKRMGKVVL 830


>gi|298695355|gb|ADI98577.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 487

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++LV  ++   GLDI  
Sbjct: 230 TKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDI-- 287

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 288 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 317


>gi|262174005|ref|ZP_06041682.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
 gi|261891363|gb|EEY37350.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
          Length = 643

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 309 LDVPR--ITHVFNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQIRMLRTIERVT 364

Query: 706 RR--REKQLEHNKK 717
           R    E QL H  K
Sbjct: 365 RSSMEEIQLPHRDK 378


>gi|258612325|ref|ZP_05711832.1| transcription-repair coupling factor [Listeria monocytogenes F6900]
 gi|258610889|gb|EEW23497.1| transcription-repair coupling factor [Listeria monocytogenes F6900]
          Length = 709

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H ++   E   +I     G+FDVLV   ++  G+DIP    + + DAD+ G  
Sbjct: 389 DARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL- 447

Query: 666 RSKTSLIQTIGRAAR 680
              + L Q  GR  R
Sbjct: 448 ---SQLYQLRGRVGR 459


>gi|257887985|ref|ZP_05667638.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,141,733]
 gi|257824039|gb|EEV50971.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,141,733]
          Length = 678

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 29/197 (14%)

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELE-----QCQGIIVEQIIRPTGLVDPPVEIRSART- 566
           LR + W   RP  + ++ATP    L      +    I++++  P G +  P+E R  RT 
Sbjct: 395 LREKGW---RPDVLFMTATPIPRTLAITAYGEMDVSIIDEL--PAGRI--PIETRWVRTP 447

Query: 567 QVEDVYDEI--NLAAQQGLRILLTVLTKRMAEDLTEY--LYER-------NIRVRYMHSE 615
           Q++ V D     LA    + ++  ++ +  A D+     +YE+          V  +H +
Sbjct: 448 QLDSVLDWTRKELARGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGK 507

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  E+  I+   +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  
Sbjct: 508 MKNQEKEVIMEAFKDNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLR 563

Query: 676 GRAARNVN-SKVILYAD 691
           GR  R  + S  IL A+
Sbjct: 564 GRVGRGSDASYCILVAN 580


>gi|224373507|ref|YP_002607879.1| transcription-repair coupling factor [Nautilia profundicola AmH]
 gi|223589861|gb|ACM93597.1| transcription-repair coupling factor [Nautilia profundicola AmH]
          Length = 974

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           ++++ GD +   EL   L+   Y+  DI   +G     GD  +I+P +LE    RVS+F 
Sbjct: 96  IEIEFGDDINLNELKEKLILWGYEHVDIVSEKGEVSFRGDIFDIWPINLEKPV-RVSLFD 154

Query: 355 NDIEEISEFYPLTGQKIRNVETIKI 379
            ++E I  F   + + I  +E+  I
Sbjct: 155 TEVESIRIFEETSQKSIEEIESFTI 179


>gi|222640394|gb|EEE68526.1| hypothetical protein OsJ_26968 [Oryza sativa Japonica Group]
          Length = 553

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 4/122 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L   L  R +    ++ +++  +R   I  L+ GK D+LV  ++   
Sbjct: 156 MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAAR 215

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+    +  +L+ D      S    I   GRA R  + + IL+A    K +   I+  
Sbjct: 216 GLDVER--ISHVLNYDIPYDTESYVHRIGRTGRAGR--SGEAILFATPREKGMLRQIERA 271

Query: 705 TR 706
           TR
Sbjct: 272 TR 273


>gi|50305963|ref|XP_452942.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660551|sp|Q6CSZ7|DHH1_KLULA RecName: Full=ATP-dependent RNA helicase DHH1
 gi|49642075|emb|CAH01793.1| KLLA0C16599p [Kluyveromyces lactis]
          Length = 514

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 5/85 (5%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E L + + E      Y H+ +K  ER ++  + R GK   LV  +LL  G+DI    +V 
Sbjct: 287 ELLAKKITELGFSCYYSHARMKQSERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI 346

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR 680
             D     F ++  + +  IGR+ R
Sbjct: 347 NFD-----FPKTAETYLHRIGRSGR 366


>gi|37678423|ref|NP_933032.1| RecG-like helicase [Vibrio vulnificus YJ016]
 gi|37197163|dbj|BAC93003.1| RecG-like helicase [Vibrio vulnificus YJ016]
          Length = 693

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 8/114 (7%)

Query: 589 VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           VL  + A D  E L  +  ++R+  +H  +K  E+  +++  +  +  +LV   ++  G+
Sbjct: 498 VLEAQAAADTAEELQRKLPDVRIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGV 557

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKSIQ 698
           D+P   L+ I + ++ G       L Q  GR  R    +  V+LY   ++K+ Q
Sbjct: 558 DVPNASLMIIENPERLGL----AQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQ 607


>gi|14521782|ref|NP_127258.1| DNA repair protein RAD25 [Pyrococcus abyssi GE5]
 gi|5459002|emb|CAB50488.1| ERCC3/XPB TFIIH basal transcription factor complex helicase, XPB
           subunit homolog [Pyrococcus abyssi GE5]
          Length = 453

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R  R GK+  +V   +L EG+D+P+  +  I+         S   L+Q +GR  
Sbjct: 358 ERVEILRKFREGKYMAVVSSQVLDEGIDVPDASVGIIISGTG-----SPRELVQRLGRIL 412

Query: 680 RNVNSK--VILY 689
           R    K   ILY
Sbjct: 413 RPAPGKERAILY 424


>gi|317402005|gb|EFV82605.1| transcription-repair coupling factor [Achromobacter xylosoxidans
           C54]
          Length = 1160

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 21/190 (11%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQ 233
           GSG  + +A +      P +V+    + A +L  E   F P   V     +    YD + 
Sbjct: 43  GSGDAWLLADLARQAGAPLVVLTAEPLEAQRLAEEIALFAPGLRVRQLPDWETLPYDAFS 102

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
           P             +  I+E++    H+    +++  D + V   + +Y +      +  
Sbjct: 103 PH------------QDLISERL----HTLHSLMMKTVDVLTVPVTTALYRLAPPSFLAAY 146

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
               K  D + +  L + L    Y         G F + G  I++FP     + +R+ +F
Sbjct: 147 TFSFKQKDKLNEAALRAQLTLANYNHVTQVTAPGEFCLRGGLIDLFPMG-SALPYRLDLF 205

Query: 354 GNDIEEISEF 363
            ++IE I  F
Sbjct: 206 DDEIETIRSF 215


>gi|312880591|ref|ZP_07740391.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM
           12260]
 gi|310783882|gb|EFQ24280.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM
           12260]
          Length = 561

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 2/107 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R LL   T+   ++L E L +   R   +H ++   ER   +   R G+ D+LV  ++  
Sbjct: 245 RALLFCATRMETQELAERLGDEGFRAMALHGDMTQRERNNALESFRRGRVDLLVATDVAA 304

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            GLDI   GL  ++     G L +        GRA     + ++L A
Sbjct: 305 RGLDID--GLSHVIQYGLPGCLETFIHRSGRTGRAGHEGRNVILLTA 349


>gi|308389889|gb|ADO32209.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis alpha710]
 gi|325135657|gb|EGC58273.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M0579]
 gi|325201565|gb|ADY97019.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M01-240149]
 gi|325207546|gb|ADZ02998.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis NZ-05/33]
          Length = 680

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++     G+ +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPELNIGL--VHGRMKAAEKAEVMARFSSGELNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|307564959|ref|ZP_07627476.1| primosomal protein N' [Prevotella amnii CRIS 21A-A]
 gi|307346272|gb|EFN91592.1| primosomal protein N' [Prevotella amnii CRIS 21A-A]
          Length = 765

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           II D  LGK ++L+G  ++ +GLD     +V ILDAD          +  +   + Q  G
Sbjct: 560 IITDFSLGKTNLLIGTQMVTKGLDFDNVSVVGILDADSMLNYPDFRAYEEAFMMMCQVSG 619

Query: 677 RAAR 680
           RA R
Sbjct: 620 RAGR 623


>gi|304387310|ref|ZP_07369503.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091]
 gi|304338693|gb|EFM04810.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091]
          Length = 462

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|294670965|ref|ZP_06735821.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307452|gb|EFE48695.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 453

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              V   D  K+         +  IGR  R
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGR 339


>gi|261212543|ref|ZP_05926828.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
 gi|260838474|gb|EEX65130.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
          Length = 639

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 309 LDVPR--ITHVFNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQIRMLRTIERVT 364

Query: 706 RR--REKQLEHNKK 717
           R    E QL H  K
Sbjct: 365 RSSMEEIQLPHRDK 378


>gi|296004804|ref|XP_002808754.1| RNA helicase, putative [Plasmodium falciparum 3D7]
 gi|225632138|emb|CAX64027.1| RNA helicase, putative [Plasmodium falciparum 3D7]
          Length = 1132

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 56/126 (44%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   T++   ++ E L E   +V Y+H+E+   +R    RD + GK ++L+  N+L 
Sbjct: 845 RYVIFCNTRKSVMNIREILEELEYKVSYIHNEMNYKDRSRNYRDFKKGKTNILICTNILS 904

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            G+    C ++    ++       KT  I       +N NS    +    T  +   I+ 
Sbjct: 905 RGVKFDNCEIINYDLSNNINDYIYKTKNICGSSNFDKNNNSLTSFFNKKTTNIVNDIIER 964

Query: 704 TTRRRE 709
           T  +++
Sbjct: 965 TVDKKQ 970


>gi|197692141|dbj|BAG70034.1| ATP-dependent RNA helicase DDX3X [Homo sapiens]
 gi|197692387|dbj|BAG70157.1| ATP-dependent RNA helicase DDX3X [Homo sapiens]
          Length = 662

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 433 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 550

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 551 ---NITKDL 556


>gi|161507718|ref|YP_001577679.1| ATP-dependent DNA helicase RecG [Lactobacillus helveticus DPC 4571]
 gi|160348707|gb|ABX27381.1| ATP-dependent DNA [Lactobacillus helveticus DPC 4571]
          Length = 676

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 560 EIRSART--QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T   V  ++  I    Q  L +   +L  +  + + E L    +RV  +    K
Sbjct: 284 DVGSGKTVVAVYAIFAAITAGYQVALMVPTEILATQHFKKIDELLRPLGVRVALLTGNTK 343

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           TLER EI R+L  G  +V++G + L++E +   + GLV I
Sbjct: 344 TLERREIYRELMDGTINVMIGTHALIQENVIFKKLGLVII 383



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 17/188 (9%)

Query: 522 RPTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           +P  + ++ATP   +  L     + V +I        P +      TQ++DVY ++    
Sbjct: 403 QPDILAMTATPIPRTLALTVYGDMTVSEIHHMPAGRKPIISSWKTSTQMKDVYQKMQDQL 462

Query: 580 QQGLRI-----LLT---VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLR 629
            QG +I     L+T    L  + AE+L   L     + +V  +H ++   ++ EI+    
Sbjct: 463 DQGFQIYAVTPLITESETLDLKNAEELHAKLSHDFPDQKVVLLHGQMPGPKKDEIMIAFA 522

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVIL 688
            G+ ++LV  +++  G+D+    ++ I +AD+ G     + L Q  GR  R    S  + 
Sbjct: 523 SGEINILVTTSVIEVGVDVANANMMVIYNADRFGL----SQLHQLRGRIGRGKTQSYCVF 578

Query: 689 YADTITKS 696
            AD  T S
Sbjct: 579 VADPKTDS 586


>gi|15925478|ref|NP_373012.1| DNA or RNA helicases of superfamily II (truncated) [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15928067|ref|NP_375600.1| hypothetical protein SA2276 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156980803|ref|YP_001443062.1| hypothetical protein SAHV_2472 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255007262|ref|ZP_05145863.2| type III restriction protein res subunit [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|13702438|dbj|BAB43579.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14248262|dbj|BAB58650.1| similar to putative helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156722938|dbj|BAF79355.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
          Length = 496

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           +K+ A DL + L  + I+   +  +     R  +I  L+ GK + ++ ++L  EG+DIPE
Sbjct: 3   SKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLKEGKINYIITVDLFNEGIDIPE 62

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              V +L   +   +      IQ +GR  R
Sbjct: 63  VNQVVMLRPTESSII-----FIQQLGRGLR 87


>gi|325968256|ref|YP_004244448.1| helicase [Vulcanisaeta moutnovskia 768-28]
 gi|323707459|gb|ADY00946.1| helicase domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 1037

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 8/112 (7%)

Query: 577 LAAQQGLRILLTVLTK--RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           + A+ G+   + V T+  R AE+L + L E    +  + +  KT +R  I +    G + 
Sbjct: 873 VKAEVGIGSKIIVFTQFIRQAEELYKVLKEELGPIITLITS-KTSDRDSIFKAFARGAYK 931

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V+V   +L EG+D+P+  +  IL         S+  +IQ IGR  R  + KV
Sbjct: 932 VIVATTVLDEGIDVPDADVAIILSGTG-----SRRQMIQRIGRVVRASDDKV 978


>gi|322373358|ref|ZP_08047894.1| primosomal protein N' [Streptococcus sp. C150]
 gi|321278400|gb|EFX55469.1| primosomal protein N' [Streptococcus sp. C150]
          Length = 798

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  + LTE L E  +    + +  K     +++     GK D+L+G  ++ +GLD P 
Sbjct: 559 TQKAYDQLTELLPEARVIRMDVDTTRKKGAHEKLLEAFGSGKADILLGTQMIAKGLDFPN 618

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
             LV +L+AD    L       R+   L Q  GRA R
Sbjct: 619 VTLVGVLNADTSLNLPDFRSAERTFQLLTQVAGRAGR 655


>gi|315274587|ref|ZP_07869462.1| transcription-repair-coupling factor [Listeria marthii FSL S4-120]
 gi|313615782|gb|EFR89035.1| transcription-repair-coupling factor [Listeria marthii FSL S4-120]
          Length = 409

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H ++   E   +I     G+FDVLV   ++  G+DIP    + + DAD+ G    
Sbjct: 91  RVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGL--- 147

Query: 668 KTSLIQTIGRAAR 680
            + L Q  GR  R
Sbjct: 148 -SQLYQLRGRVGR 159


>gi|308162755|gb|EFO65133.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           P15]
          Length = 391

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 10/113 (8%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           VED+Y    L+ QQG  ++      R+ E L E L      +  +HSE+   ER +I+ +
Sbjct: 248 VEDIYKV--LSVQQG--VIFCNSIGRVKE-LAEKLKSAGHTLSCIHSELDQAERNKIMGE 302

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            R G+  +L+  N++  G+D+    LV   D  +E       + +  IGR+ R
Sbjct: 303 FRSGQTRILIATNIIARGIDVQNVSLVINYDIPRE-----PETYLHRIGRSGR 350


>gi|297686801|ref|XP_002820927.1| PREDICTED: nucleolar RNA helicase 2-like [Pongo abelii]
          Length = 783

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  QG R ++   TK+ A++L++    +    + +H ++   +R   ++  R G F VLV
Sbjct: 435 SGHQG-RTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFRNGSFGVLV 492

Query: 638 GINLLREGLDIPECGLV 654
             N+   GLDIPE  LV
Sbjct: 493 ATNVAARGLDIPEVDLV 509


>gi|296235289|ref|XP_002762845.1| PREDICTED: ATP-dependent RNA helicase DDX3X isoform 1 [Callithrix
           jacchus]
 gi|297709768|ref|XP_002831596.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Pongo
           abelii]
          Length = 660

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 433 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 550

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 551 ---NITKDL 556


>gi|295100690|emb|CBK98235.1| primosomal protein N' [Faecalibacterium prausnitzii L2-6]
          Length = 753

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 28/173 (16%)

Query: 55  KHRKNAAKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDN 114
           +H +N+ K +   Q++   +  +  + + +S  E+   E+    +T +V         DN
Sbjct: 130 RHTENSYKLVGTLQQKPKPTAKQLAAVALLSGGERTQNEMEAHGITKAVL--------DN 181

Query: 115 PLLKNGKIWTPHRSWSINNHS------KDITFFQMQTDYHPSGDQPAAIAQLLKGIH-SR 167
            L   G +     + SI+ +S      + IT          +  Q AA   LL G+  + 
Sbjct: 182 -LCAKGVVECSKVNKSIDLYSSIPLKNEPITL---------TAQQQAAYDALLPGLEDTA 231

Query: 168 EKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFKNFF 217
               LL GVTGSGKT    K+IE   A+ R A+V+ P   L  Q+    K+ F
Sbjct: 232 PHSALLYGVTGSGKTLVFLKLIERCLALGRRALVLVPEISLTPQMILRLKSRF 284


>gi|284993319|ref|YP_003411874.1| ATP-dependent DNA helicase, RecQ family [Geodermatophilus obscurus
           DSM 43160]
 gi|284066565|gb|ADB77503.1| ATP-dependent DNA helicase, RecQ family [Geodermatophilus obscurus
           DSM 43160]
          Length = 568

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 7/99 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  E ++  L ER +RVR  H+ +K  ER +  R     + DV+V       G+D P+
Sbjct: 263 TRKGTEGISAELAERGLRVRPYHAGLKKSEREDTQRAFMDDELDVVVATTAFGMGIDKPD 322

Query: 651 CGLVAILD-ADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   + AD      S  S  Q IGRA R+    + L
Sbjct: 323 TRFVVHAEPAD------SVDSYYQEIGRAGRDGQPALAL 355


>gi|262192111|ref|ZP_06050273.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93]
 gi|262032022|gb|EEY50598.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93]
          Length = 464

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVY--------DEINLAAQQG--LRILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y        D +    ++G   ++L+ + TK  A 
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L  YL E+ +    +H       R   + D + G+  +LV  ++   G+DIP+
Sbjct: 258 RLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQ 311


>gi|260408201|gb|ACX37415.1| vasa [Botryllus schlosseri]
          Length = 655

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 7/111 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TKR A+ L   L + N+    +H + +  ER   + D + G   +L+  ++  
Sbjct: 457 RTLVFVDTKRNADFLATLLSQENLPTTSIHGDRQQREREMALVDFKNGTCPILIATSVAA 516

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADT 692
            GLDIP+   V   D   E         +  IGR  R  N+ +    Y D+
Sbjct: 517 RGLDIPKVEHVINYDLPSE-----IDEYVHRIGRTGRCGNLGTATSFYDDS 562


>gi|253688855|ref|YP_003018045.1| transcription-repair coupling factor [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755433|gb|ACT13509.1| transcription-repair coupling factor [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 1150

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 129/314 (41%), Gaps = 50/314 (15%)

Query: 166 SREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV-- 222
           S+   Q LLG +TG+      A++IE      +++AP+   A +L  E + F   +    
Sbjct: 12  SKAGEQRLLGQLTGAACAVECAEIIERHAGLVVLIAPDMQNALRLRDEIQQFTDQHVTTL 71

Query: 223 -EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSS 277
            ++    YD + P   +      I    S   Q+  M          +L++R     V  
Sbjct: 72  PDWETLPYDSFSPHQEI------ISTRLSTLYQLPNMTRGVLILPVNTLMQR-----VCP 120

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            S ++G   V         LK G  + + +L S L +  Y+  D  +  G +   G  ++
Sbjct: 121 HSFLHGHALV---------LKKGQRLSRDKLRSQLEQAGYRSVDQVMEHGEYATRGALLD 171

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           +FP   E+  +R+  F ++I+ +  F   T + +  V  I +     +    PT  TA++
Sbjct: 172 LFPMGSEE-PYRIDFFDDEIDSLRLFDVDTQRTLNEVPHINLLPAHEF----PTDKTAIE 226

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
             + + + +  E+ +     +A+ + Q+++  +           IE +          EP
Sbjct: 227 LFRSQWREQF-EVRR-----DAEHIYQQVSKGV-------WPAGIEYWQPLFF----SEP 269

Query: 458 PPTLFEYIPEDSLL 471
            P+LF Y P ++L+
Sbjct: 270 LPSLFSYFPNNTLI 283


>gi|240128393|ref|ZP_04741054.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268686791|ref|ZP_06153653.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268627075|gb|EEZ59475.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 462

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|291297189|ref|YP_003508587.1| DEAD/DEAH box helicase domain-containing protein [Meiothermus ruber
           DSM 1279]
 gi|290472148|gb|ADD29567.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279]
          Length = 556

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 18/147 (12%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK    DL   L  R      +H ++  ++R  ++   R G   VLV  ++  
Sbjct: 240 RTIVFTSTKAECNDLALGLESRAHSAAPIHGDMGQIDRERVMERFRSGAVSVLVATDVAA 299

Query: 644 EGLDIPECGLVA---ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            GLDIPE  LV    + D ++    RS  +     GRA R+    VILY     + ++  
Sbjct: 300 RGLDIPEVDLVVHYRLPDQNESYLHRSGRT-----GRAGRS-GKVVILYGPREKRELETL 353

Query: 701 IDETTRRREKQLEHNKKHNINPQSVKE 727
                   E++L+ N K  +NP + +E
Sbjct: 354 --------ERELKRNFKR-VNPPTPEE 371


>gi|307154808|ref|YP_003890192.1| transcription-repair coupling factor [Cyanothece sp. PCC 7822]
 gi|306985036|gb|ADN16917.1| transcription-repair coupling factor [Cyanothece sp. PCC 7822]
          Length = 1169

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359
           G + E K L ++L +  Y+R ++    G +   GD ++IFP   E +  R+  FG+++E+
Sbjct: 157 GMTQEVKTLDTALTRLGYERVNLVETEGQWSRRGDIVDIFPVSAE-LPVRLEWFGDELEQ 215

Query: 360 ISEFYPLTGQKIRNVETIKIYANSHY 385
           + EF P T + +  +  + +   S++
Sbjct: 216 LREFDPATQRSLDQITQLTLTPISYF 241


>gi|188529677|gb|ACD62525.1| Vasa [Silurus meridionalis]
          Length = 662

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R G+  VLV  ++  
Sbjct: 478 RTMVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALGDFRTGQCPVLVATSVAA 537

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDI +   V   D  K          +  IGR  R  N+
Sbjct: 538 RGLDIEQVQNVINFDLPK-----YIDEYVHRIGRTGRCGNT 573


>gi|191639457|ref|YP_001988623.1| Transcription-repair coupling factor (TRCF) [Lactobacillus casei
           BL23]
 gi|190713759|emb|CAQ67765.1| Transcription-repair coupling factor (TRCF) [Lactobacillus casei
           BL23]
 gi|205270976|emb|CAP07849.1| transcriptional-repair coupling factor [Lactobacillus casei BL23]
 gi|327383550|gb|AEA55026.1| Transcription-repair coupling factor [Lactobacillus casei LC2W]
 gi|327386742|gb|AEA58216.1| Transcription-repair coupling factor [Lactobacillus casei BD-II]
          Length = 1174

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 44/232 (18%), Positives = 98/232 (42%), Gaps = 13/232 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
            L+ G++GS KT     +++   +  +++  N+  A +L ++  +    +AV Y     D
Sbjct: 25  HLVTGLSGSAKTVFFGALLQQRPQQILIVENNRFHADELAADLSSLL-GDAVVYDFPVED 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
               E  V   +T        N++I+ +    +     +   IV S       + S   +
Sbjct: 84  VLAAEVAVSSPETR-------NDRINALTFIQSG----KPGIIVTSLAGYKRLLPSPADW 132

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +   + + +   ++ + +   LV   Y+R  +    G F + G  I+++P + +D   R+
Sbjct: 133 TASELAIDMTSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDVYPLNQDD-PIRI 191

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            +F  +I+ I  F   T + ++ ++ I I   +  V     L  A + I ++
Sbjct: 192 ELFDTEIDSIRSFDIATQRSLQKLQQITIAPATDMVATDQVLAAAGERITKQ 243



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y H ++   +   +I D   G +DVLV   ++  G+D+P    + I +AD  G     
Sbjct: 856 VGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGL---- 911

Query: 669 TSLIQTIGRAARN 681
           + L Q  GR  R+
Sbjct: 912 SQLYQLRGRIGRS 924


>gi|164657394|ref|XP_001729823.1| hypothetical protein MGL_2809 [Malassezia globosa CBS 7966]
 gi|159103717|gb|EDP42609.1| hypothetical protein MGL_2809 [Malassezia globosa CBS 7966]
          Length = 402

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE L+     V  MH ++   +R  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 277 TRRKVDWLTEQLHAMEFTVSAMHGDMDQQQREVIMREFRSGSSRVLITTDLLARGIDVQQ 336

Query: 651 CGLV 654
             LV
Sbjct: 337 VSLV 340


>gi|153215146|ref|ZP_01949844.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
 gi|124114870|gb|EAY33690.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
          Length = 464

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVY--------DEINLAAQQG--LRILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y        D +    ++G   ++L+ + TK  A 
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L  YL E+ +    +H       R   + D + G+  +LV  ++   G+DIP+
Sbjct: 258 RLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQ 311


>gi|115398415|ref|XP_001214799.1| hypothetical protein ATEG_05621 [Aspergillus terreus NIH2624]
 gi|121737771|sp|Q0CL13|DBP3_ASPTN RecName: Full=ATP-dependent RNA helicase dbp3
 gi|114192990|gb|EAU34690.1| hypothetical protein ATEG_05621 [Aspergillus terreus NIH2624]
          Length = 493

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 34/71 (47%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L   L K+ A  +  +L  R  +V  +H ++   ER   +   + G   VLV  ++  
Sbjct: 330 KVLAFCLYKKEATRIERFLQSRGFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAA 389

Query: 644 EGLDIPECGLV 654
            GLDIP   LV
Sbjct: 390 RGLDIPAVKLV 400


>gi|110638983|ref|YP_679192.1| primosomal protein N' [Cytophaga hutchinsonii ATCC 33406]
 gi|110281664|gb|ABG59850.1| primosomal protein N'(replication factor Y)(possible helicase)
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 815

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R+ ++L   L E  IR   + +  K     E+I      + D+L+G  ++ +GLD   
Sbjct: 575 TERIEDELQILLPEARIRRMDLDTTRKKNSFAELITAFSQHEIDILIGTQMVTKGLDFAN 634

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAARNVN-SKVIL 688
             LV + DAD+  +        R+   ++Q  GRA R     KVI+
Sbjct: 635 VELVGVYDADRMLYFPDFRAIERTYQMIVQVSGRAGRKSGEGKVII 680


>gi|88608231|ref|YP_506101.1| primosomal protein N' [Neorickettsia sennetsu str. Miyayama]
 gi|88600400|gb|ABD45868.1| primosomal protein N' [Neorickettsia sennetsu str. Miyayama]
          Length = 709

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 12/97 (12%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            +++AE++ E    + + +  M S+ K  E I+ I     G  D+++G  ++ +G D P 
Sbjct: 478 VEKIAEEIGELFPSKEVLI--MSSDTKITENIQKIEK---GDVDIVIGTQIIAKGYDFPR 532

Query: 651 CGLVAILDAD---KEGFLRSKTS----LIQTIGRAAR 680
             L+AI+D+D     G LR+       L Q IGR  R
Sbjct: 533 LTLLAIIDSDVSMHTGDLRNSEKSFQILQQAIGRVGR 569


>gi|71420983|ref|XP_811671.1| RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70876358|gb|EAN89820.1| RNA helicase, putative [Trypanosoma cruzi]
          Length = 553

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +    ++L + +  + + +  M+S++   ER E I + RLGK  V++  +LL  
Sbjct: 366 VLIFVQSIERTKELYDEIRCQGLNIAVMNSKMNHEERDETIMNFRLGKLWVIITTDLLSR 425

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G V   D     F  +  S I  IGR  R
Sbjct: 426 GIDFKNIGTVINFD-----FPITIESYIHRIGRCGR 456


>gi|332834196|ref|XP_003312635.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan troglodytes]
          Length = 715

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  QG R ++   TK+ A++L++    +    + +H ++   +R   ++  R G F VLV
Sbjct: 367 SGHQG-RTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFRNGSFGVLV 424

Query: 638 GINLLREGLDIPECGLV 654
             N+   GLDIPE  LV
Sbjct: 425 ATNVAARGLDIPEVDLV 441


>gi|332218194|ref|XP_003258244.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Nomascus leucogenys]
          Length = 715

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  QG R ++   TK+ A++L++    +    + +H ++   +R   ++  R G F VLV
Sbjct: 367 SGHQG-RTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFRNGSFGVLV 424

Query: 638 GINLLREGLDIPECGLV 654
             N+   GLDIPE  LV
Sbjct: 425 ATNVAARGLDIPEVDLV 441


>gi|326930919|ref|XP_003211585.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Meleagris
           gallopavo]
          Length = 597

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  +DLT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 333 KTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 392

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 393 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 428


>gi|291619493|ref|YP_003522235.1| RecG [Pantoea ananatis LMG 20103]
 gi|291154523|gb|ADD79107.1| RecG [Pantoea ananatis LMG 20103]
 gi|327395802|dbj|BAK13224.1| ATP-dependent DNA helicase RecG [Pantoea ananatis AJ13355]
          Length = 692

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++RV  +H  +K  E++ +++  +  +  +L+   ++  G+D+P   L+ I + ++ G  
Sbjct: 516 DLRVGLVHGRMKPAEKLAVMQAFKANEIQLLIATTVIEVGVDVPNASLMIIENPERLGL- 574

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
                L Q  GR  R   +   V+LY   ++K+ Q
Sbjct: 575 ---AQLHQLRGRVGRGAVASHCVLLYKAPLSKTAQ 606


>gi|262403840|ref|ZP_06080398.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
 gi|262350344|gb|EEY99479.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
          Length = 643

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 309 LDVPR--ITHVFNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQIRMLRTIERVT 364

Query: 706 RR--REKQLEHNKK 717
           R    E QL H  K
Sbjct: 365 RSSMEEIQLPHRDK 378


>gi|226286755|gb|EEH42268.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 659

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLVA 655
           LT+      +  RY+ S+ +   R E +   R  ++ VLV   L  EG DIP  +C L+A
Sbjct: 316 LTDTFRRFGVDARYITSQTRKNLRTEELEAFRNQEYPVLVNCGLFTEGTDIPNIDCVLLA 375

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR 680
                     RSK  LIQ IGR  R
Sbjct: 376 -------RPTRSKNLLIQMIGRGLR 393


>gi|283797869|ref|ZP_06347022.1| ATP-dependent DNA helicase RecG [Clostridium sp. M62/1]
 gi|291074560|gb|EFE11924.1| ATP-dependent DNA helicase RecG [Clostridium sp. M62/1]
 gi|295091919|emb|CBK78026.1| ATP-dependent DNA helicase RecG [Clostridium cf. saccharolyticum
           K10]
          Length = 722

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK++ E+L E     ++RV Y+H ++K  E+  ++     G+  VLV   ++  G+++P 
Sbjct: 530 TKKLRENLPE-----SVRVEYLHGKMKPKEKNLLMEQFAEGEIQVLVSTTVIEVGINVPN 584

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             ++ I +A++ G       L Q  GR  R 
Sbjct: 585 ATVMMIENAERFGL----AQLHQLRGRVGRG 611


>gi|301171475|ref|NP_001180346.1| ATP-dependent RNA helicase DDX3X isoform 3 [Homo sapiens]
 gi|296235291|ref|XP_002762846.1| PREDICTED: ATP-dependent RNA helicase DDX3X isoform 2 [Callithrix
           jacchus]
 gi|297709770|ref|XP_002831597.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Pongo
           abelii]
 gi|194388152|dbj|BAG65460.1| unnamed protein product [Homo sapiens]
          Length = 646

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 417 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 475

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 476 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 534

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 535 ---NITKDL 540


>gi|172063096|ref|YP_001810747.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171995613|gb|ACB66531.1| DEAD/H associated domain protein [Burkholderia ambifaria MC40-6]
          Length = 1505

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSEVKTLERIEIIR 626
           E VYD I   A      L+ V T+R AE +  +L ER  +  +   H  +    R +  +
Sbjct: 269 EQVYDRIAALAAAHRTTLVFVNTRRTAERMARHLAERLGKDAIAAHHGSLAKEHRFDAEQ 328

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            L+ G+  +LV    L  G+DI +  LV      + G  R     +Q +GR+  +V  
Sbjct: 329 RLKRGELKLLVATASLELGIDIGDVDLVC-----QVGSPRGIAPFLQRVGRSGHHVGG 381


>gi|110833889|ref|YP_692748.1| transcription-repair coupling factor [Alcanivorax borkumensis SK2]
 gi|110647000|emb|CAL16476.1| transcription-repair coupling factor [Alcanivorax borkumensis SK2]
          Length = 1159

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/227 (19%), Positives = 88/227 (38%), Gaps = 23/227 (10%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF--PHNAV 222
           + RE  +   G+        +A++  +     +V+APN   A QL      +    +  V
Sbjct: 12  NGREHYKDWAGLNAGSMAAVLAELARSQNHLLVVLAPNSSRAQQLTDSLSFYLTGSNTPV 71

Query: 223 EYFVSY----YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
             F  +    YD + P             +  I+++I  +    T         +VV   
Sbjct: 72  MLFPDWETLPYDLFSPH------------QDIISDRIQVLHQLPT----THKGILVVPVN 115

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           + +  +      +     LK+GD  + +   S LV   Y+++D     G F V G  ++I
Sbjct: 116 TLMQRLAPPIHITGNSFLLKVGDRFDMEATRSRLVASGYRQRDNVYEHGEFAVRGAIMDI 175

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           FP   E   +R+ +F ++IE +  F   + +    V+ I +   + +
Sbjct: 176 FPMGAEQ-PFRIELFDDEIESLRLFEAESQRSTGKVDNITLLPAAEF 221



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H +++  E   ++ D    +F+VLV   ++  G+D+P    + I  ADK G  
Sbjct: 841 DARVGIAHGQMRERELEAVMSDFYHRRFNVLVSTTIIETGIDVPSANTIIIDRADKLGL- 899

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
                L Q  GR  R+ +     YA  IT S ++   +  +R E
Sbjct: 900 ---AQLHQLRGRVGRSHHQA---YAYLITPSPKVMTKDAIKRLE 937


>gi|2580550|gb|AAC51829.1| dead box, X isoform [Homo sapiens]
 gi|2580552|gb|AAC51830.1| dead box, X isoform [Homo sapiens]
          Length = 662

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 433 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 550

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 551 ---NITKDL 556


>gi|114149265|sp|Q3MSQ8|DDX4_RANLE RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog
 gi|76253272|emb|CAH56439.1| DEAD box protein [Rana lessonae]
          Length = 724

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  +    +H + +  ER   +RD R G+  V+V  ++  
Sbjct: 540 RTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQKERETALRDFRTGQCPVIVATSVAA 599

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D   +         +  IGR  R  N+ + I + D
Sbjct: 600 RGLDIENVSYVINFDIPDD-----IDEYVHRIGRTGRCGNTGRAISFFD 643


>gi|54298857|ref|YP_125226.1| primosomal protein N' (replication factor Y) [Legionella
           pneumophila str. Paris]
 gi|53752642|emb|CAH14077.1| Primosomal protein N' (replication factor Y) [Legionella
           pneumophila str. Paris]
          Length = 725

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKT----FTMAKVIEAMQRPAIVMAPNKILAA 207
           +Q  A+A +L+ IH  +   LL GVTGSGKT      +AK++E  ++  +V+ P   L  
Sbjct: 199 EQAVAVASILEHIHHYQCF-LLQGVTGSGKTEVYLHVIAKILEQGKQ-VLVLVPEIGLTP 256

Query: 208 QLYSEFKNFFPH 219
           QL S F   F H
Sbjct: 257 QLLSRFTARFNH 268


>gi|51476855|emb|CAH18395.1| hypothetical protein [Homo sapiens]
 gi|119574692|gb|EAW54307.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_c [Homo
           sapiens]
 gi|123993911|gb|ABM84557.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
 gi|124000685|gb|ABM87851.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
 gi|189054973|dbj|BAG37957.1| unnamed protein product [Homo sapiens]
          Length = 715

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  QG R ++   TK+ A++L++    +    + +H ++   +R   ++  R G F VLV
Sbjct: 367 SGHQG-RTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFRNGSFGVLV 424

Query: 638 GINLLREGLDIPECGLV 654
             N+   GLDIPE  LV
Sbjct: 425 ATNVAARGLDIPEVDLV 441


>gi|326476158|gb|EGE00168.1| ATP-dependent DNA helicase [Trichophyton tonsurans CBS 112818]
          Length = 1176

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++EII+  + G ++ +V  ++  EGLDI E  L+   D+       S   ++Q +GR  
Sbjct: 767 KQLEIIKKFKEGTYNTIVATSIGEEGLDIGEVDLIICYDSSA-----SPIRMLQRMGRTG 821

Query: 680 RNVNSKVIL 688
           R    KV+L
Sbjct: 822 RKRMGKVVL 830


>gi|322386007|ref|ZP_08059647.1| primosome assembly protein PriA [Streptococcus cristatus ATCC
           51100]
 gi|321269990|gb|EFX52910.1| primosome assembly protein PriA [Streptococcus cristatus ATCC
           51100]
          Length = 801

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 7/97 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  ++LT    E  I    + +  K     EI+     G+ D+L+G  ++ +GLD P 
Sbjct: 562 TQKAYDELTTLFPEARILRMDVDTTRKKGSHEEILEAFGQGQADILLGTQMIAKGLDFPN 621

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
             LV +L+AD    L       R+   L Q  GRA R
Sbjct: 622 VTLVGVLNADTALNLPDFRSSERTFQLLTQVAGRAGR 658


>gi|315044265|ref|XP_003171508.1| helicase domain-containing protein [Arthroderma gypseum CBS 118893]
 gi|311343851|gb|EFR03054.1| helicase domain-containing protein [Arthroderma gypseum CBS 118893]
          Length = 1184

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++EII+  + G ++ +V  ++  EGLDI E  L+   D+       S   ++Q +GR  
Sbjct: 773 KQLEIIKKFKEGTYNTIVATSIGEEGLDIGEVDLIICYDSSA-----SPIRMLQRMGRTG 827

Query: 680 RNVNSKVIL 688
           R    KV+L
Sbjct: 828 RKRMGKVVL 836


>gi|309378859|emb|CBX22564.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 462

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|302334881|ref|YP_003800088.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
 gi|301318721|gb|ADK67208.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
          Length = 554

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A  Q  R+L+   TK  A+DL + L    I    MH++     R   +   R G   V
Sbjct: 375 GAAGVQPERVLVFCRTKHRADDLDKRLKSAGISADVMHADRPQRARERALEKFRAGTCQV 434

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           LV  +++  G+D+   G+ A+++ D           I   GRA    ++   +  D I+
Sbjct: 435 LVATDVMSRGIDV--SGIDAVVNYDVPMDPEDYVHRIGRTGRAGATGHAYTFVAPDEIS 491


>gi|291167153|gb|EFE29199.1| transketolase, C- subunit [Filifactor alocis ATCC 35896]
          Length = 309

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE---------INLAAQQGLRILLTVL 590
           C G+  E IIR    +D P  +R  R  VED++DE         + L     + ++ T  
Sbjct: 138 CDGVETEHIIRAVAELDGPCYVRLGRPSVEDIFDETYQFEIGKGVTLKEGNDVTLVCTGF 197

Query: 591 TKRMAEDLTEYLYERNIRVRYMH 613
               A    E L + NI  R +H
Sbjct: 198 ETGQALQAAEELEKDNIHARVIH 220


>gi|302920275|ref|XP_003053036.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256733976|gb|EEU47323.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 621

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 38/72 (52%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L    G+R ++ V +++ A++L ++LY   + V  +HS+    ER   +R  R G   +L
Sbjct: 380 LEEMHGVRTIIFVNSRQAADNLDDFLYNMKLPVTSIHSDRTQQEREAAMRSFRSGNAPIL 439

Query: 637 VGINLLREGLDI 648
           +   +   G+D+
Sbjct: 440 IATGVSARGIDV 451


>gi|227533044|ref|ZP_03963093.1| transcription-repair coupling factor (TRCF) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227189445|gb|EEI69512.1| transcription-repair coupling factor (TRCF) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 1174

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 44/232 (18%), Positives = 98/232 (42%), Gaps = 13/232 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
            L+ G++GS KT     +++   +  +++  N+  A +L ++  +    +AV Y     D
Sbjct: 25  HLVTGLSGSAKTVFFGALLQQRPQQILIVENNRFHADELAADLSSLL-GDAVVYDFPVED 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
               E  V   +T        N++I+ +    +     +   IV S       + S   +
Sbjct: 84  VLAAEVAVSSPETR-------NDRINALTFIQSG----KPGIIVTSLAGYKRLLPSPADW 132

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +   + + +   ++ + +   LV   Y+R  +    G F + G  I+++P + +D   R+
Sbjct: 133 AASELAIDMTSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDVYPLNQDD-PIRI 191

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            +F  +I+ I  F   T + ++ ++ I I   +  V     L  A + I ++
Sbjct: 192 ELFDTEIDSIRSFDIATQRSLQKLQQITIAPATDMVATDQVLAAAGERITKQ 243



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y H ++   +   +I D   G +DVLV   ++  G+D+P    + I +AD  G     
Sbjct: 856 VGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGL---- 911

Query: 669 TSLIQTIGRAARN 681
           + L Q  GR  R+
Sbjct: 912 SQLYQLRGRIGRS 924


>gi|226323668|ref|ZP_03799186.1| hypothetical protein COPCOM_01443 [Coprococcus comes ATCC 27758]
 gi|225207852|gb|EEG90206.1| hypothetical protein COPCOM_01443 [Coprococcus comes ATCC 27758]
          Length = 813

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y H +++  +  +I+ D   G+ DVLV   ++  GLDI     + I DAD+ G     
Sbjct: 501 VAYAHGQMREHKLEDIMYDFINGEIDVLVSTTIIETGLDISNANTMIIHDADRMGL---- 556

Query: 669 TSLIQTIGRAARN 681
           + L Q  GR  R+
Sbjct: 557 SQLYQLRGRVGRS 569


>gi|239625761|ref|ZP_04668792.1| type III restriction protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519991|gb|EEQ59857.1| type III restriction protein [Clostridiales bacterium 1_7_47FAA]
          Length = 829

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER E IR LR G+  V+  +++  EGLDI E  +V  L   +     S    +Q +GR  
Sbjct: 490 ERSEAIRKLRAGEIKVIFSVDMFNEGLDISEIDMVMFLRPTE-----SPVVFLQQLGRGL 544

Query: 680 RNVNSKVIL 688
           R   +K  L
Sbjct: 545 RKSRNKEYL 553


>gi|119946809|ref|YP_944489.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119865413|gb|ABM04890.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 581

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 8/125 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK    +L E L  R  R   ++ ++    R   I  L+ G  D+LV  ++   
Sbjct: 256 VIIFARTKTATVELAERLEARGYRSAALNGDMNQQVRERTIARLKSGGLDILVATDVAAR 315

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+    LV   D   D E ++      I   GRA R    K IL+A    + +  AI+
Sbjct: 316 GLDVERLSLVVNYDIPTDTESYVHR----IGRTGRAGR--KGKAILFAAPRERRLLKAIE 369

Query: 703 ETTRR 707
             TR+
Sbjct: 370 RATRQ 374


>gi|40063513|gb|AAR38313.1| ATP-dependent RNA helicase RhlE [uncultured marine bacterium 581]
          Length = 446

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 38/75 (50%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TKR A  L E+L +++I+   +H       R   + + + GK  VLV  ++  
Sbjct: 245 QVLVFSRTKRGANRLAEFLEKKDIQAAAIHGNKSQGARTRALSEFKSGKLRVLVATDIAA 304

Query: 644 EGLDIPECGLVAILD 658
            GLDI +   V  LD
Sbjct: 305 RGLDIEQLPQVVNLD 319


>gi|331090628|ref|ZP_08339479.1| hypothetical protein HMPREF9477_00122 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401068|gb|EGG80663.1| hypothetical protein HMPREF9477_00122 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 1112

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 3/125 (2%)

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
           I  LK+GD+V+   L   +    Y R+      G F V G  I+I+P   E+V  R+  +
Sbjct: 136 IFTLKVGDTVDFDSLKEKVAALGYDREVQIDGMGQFAVRGGIIDIYPL-TEEVPIRIEFW 194

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
            ++I+ I  F   + + I N+E I IY  + +        + ++Y   E  M  + L++ 
Sbjct: 195 DDEIDSIRTFDVESQRSIENLEEIVIYPATDFPEEEGKRVSFLEYFPVEETM--VFLDEP 252

Query: 414 GRLLE 418
            RL+E
Sbjct: 253 ARLME 257



 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y H ++   +  +I+ D   G+ DVLV   ++  GLDI     + I +ADK G     
Sbjct: 802 VTYAHGQMSEHQLEKIMYDFINGEIDVLVSTTIIETGLDISNANTMIIHEADKLGL---- 857

Query: 669 TSLIQTIGRAARN 681
           + L Q  GR  R+
Sbjct: 858 SQLYQLRGRVGRS 870


>gi|296314174|ref|ZP_06864115.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
           ATCC 43768]
 gi|296839180|gb|EFH23118.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
           ATCC 43768]
          Length = 457

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|289432949|ref|YP_003462822.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. GT]
 gi|288946669|gb|ADC74366.1| ATP-dependent DNA helicase RecG [Dehalococcoides sp. GT]
          Length = 818

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H  +   E+  I+R    G+ D+LV   ++  G+DIP   ++ +  AD+ G    
Sbjct: 641 RVALLHGRMNASEKETIMRHFSEGEMDILVSTPVIEVGIDIPNAAVMLVESADRFGL--- 697

Query: 668 KTSLIQTIGRAARNVNSKVILY 689
            + L Q  GR  R       ++
Sbjct: 698 -SQLHQFRGRVGRGTEQSYCMF 718


>gi|256785357|ref|ZP_05523788.1| helicase [Streptomyces lividans TK24]
          Length = 513

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A DL + L +R      +H ++    R + +R  R GK DVLV  ++   G+D+
Sbjct: 299 TKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDV 356


>gi|225684691|gb|EEH22975.1| DEAD box family helicase [Paracoccidioides brasiliensis Pb03]
          Length = 652

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLVA 655
           LT+      +  RY+ S+ +   R E +   R  ++ VLV   L  EG DIP  +C L+A
Sbjct: 309 LTDTFRRFGVDARYITSQTRKNLRTEELEAFRNQEYPVLVNCGLFTEGTDIPNIDCVLLA 368

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR 680
                     RSK  LIQ IGR  R
Sbjct: 369 -------RPTRSKNLLIQMIGRGLR 386


>gi|123477017|ref|XP_001321678.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121904509|gb|EAY09455.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 521

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 10/115 (8%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI---EIIRDLRLGKF 633
           L   Q  +I++   TKR  + L+++L  ++IR   +H +    ER+   +  ++ R G  
Sbjct: 324 LKENQSKKIIIFAKTKRTVQQLSDFLKSKSIRCLSIHGDKTQQERVVALDKFKNARTG-- 381

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            VLV  ++   GLD+ +  LV  L+ D  G +      +  IGR AR   + V +
Sbjct: 382 GVLVATDVAARGLDVTDIDLV--LNYDFPGDIE---DYVHRIGRTARGEKTGVAI 431


>gi|77464192|ref|YP_353696.1| DNA helicase [Rhodobacter sphaeroides 2.4.1]
 gi|77388610|gb|ABA79795.1| Possible DNA helicase [Rhodobacter sphaeroides 2.4.1]
          Length = 1715

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 17/170 (10%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+   E + E+L  + I   + H+ +   ++  +    R+G   V+   N    G+D P+
Sbjct: 544 TRAETERIAEFLKRQGIAAEHFHAGLTPDDKQTVQERFRVGDLRVIAATNAFGMGIDKPD 603

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN---VNSKVILYADTITKSIQLAIDETTRR 707
             LV  L AD  G L    + +Q  GRA R+    +  ++ ++D + +   L       R
Sbjct: 604 IRLV--LHADIPGSLE---NYLQEAGRAGRDRQPADCVLLYHSDDVERQFTLTARSRLER 658

Query: 708 RE-----KQLEHNKKHNINPQSVKEKIMEVI----DPILLEDAATTNISI 748
            E     K L    +H  N   V     E++    D   + D+AT +  +
Sbjct: 659 HEIGAILKALRRIDEHTRNSGKVVASAGEIVREEKDRAFVRDSATDDTRV 708


>gi|156119497|ref|NP_001095245.1| putative ATP-dependent RNA helicase an3 [Xenopus laevis]
 gi|113825|sp|P24346|DDX3_XENLA RecName: Full=Putative ATP-dependent RNA helicase an3
 gi|65060|emb|CAA40605.1| ATP dependent RNA helicase [Xenopus laevis]
          Length = 697

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 474 DLLNATGKDSL-TLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 532

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N K I 
Sbjct: 533 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNI- 591

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 592 ---NITKDL 597


>gi|74096143|ref|NP_001027593.1| DEAD-Box Protein [Ciona intestinalis]
 gi|4126716|dbj|BAA36711.1| DEAD-Box Protein [Ciona intestinalis]
          Length = 659

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 8/125 (6%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE +  R+++ ++  ++N       R L+ V TKR A+ L   L + +     +H +   
Sbjct: 437 VEWKDKRSKLLELIADVNETKS---RTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQ 493

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            +R + +RD +L    +LV  ++   GLDIP+   V   D  +E         +  IGR 
Sbjct: 494 QDREQALRDFKLAVCPILVATSVAARGLDIPKVEHVINYDMPRE-----IDEYVHRIGRT 548

Query: 679 ARNVN 683
            R  N
Sbjct: 549 GRCGN 553


>gi|310779483|ref|YP_003967816.1| ATP-dependent DNA helicase RecG [Ilyobacter polytropus DSM 2926]
 gi|309748806|gb|ADO83468.1| ATP-dependent DNA helicase RecG [Ilyobacter polytropus DSM 2926]
          Length = 684

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 54/102 (52%), Gaps = 8/102 (7%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R   +H  +K  E+ EI+   +  K D+LV   ++  G+++P   ++ I + ++ G    
Sbjct: 511 RAGLLHGRMKNSEKDEIMHFFKNHKLDILVATTVIEVGINVPNASIMVINNTERFGL--- 567

Query: 668 KTSLIQTIGRAARNVN-SKVILYADT---ITKSIQLAIDETT 705
            ++L Q  GR  R ++ S   L+++T   ++KS  + ++ TT
Sbjct: 568 -SALHQLRGRVGRGIHPSYCFLFSETDNDVSKSRLMIMESTT 608


>gi|296220513|ref|XP_002756342.1| PREDICTED: nucleolar RNA helicase 2 [Callithrix jacchus]
          Length = 799

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  QG R ++   TK+ A++L++    +    + +H ++   +R   ++  R G F VLV
Sbjct: 451 SGHQG-RTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFRNGSFGVLV 508

Query: 638 GINLLREGLDIPECGLV 654
             N+   GLDIPE  LV
Sbjct: 509 ATNVAARGLDIPEVDLV 525


>gi|239630377|ref|ZP_04673408.1| transcription-repair coupling factor [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239526660|gb|EEQ65661.1| transcription-repair coupling factor [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 1174

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 44/232 (18%), Positives = 98/232 (42%), Gaps = 13/232 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
            L+ G++GS KT     +++   +  +++  N+  A +L ++  +    +AV Y     D
Sbjct: 25  HLVTGLSGSAKTVFFGALLQQRPQQILIVENNRFHADELAADLSSLL-GDAVVYDFPVED 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
               E  V   +T        N++I+ +    +     +   IV S       + S   +
Sbjct: 84  VLAAEVAVSSPETR-------NDRINALTFIQSG----KPGIIVTSLAGYKRLLPSPADW 132

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +   + + +   ++ + +   LV   Y+R  +    G F + G  I+++P + +D   R+
Sbjct: 133 AASELAIDMTSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDVYPLNQDD-PIRI 191

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            +F  +I+ I  F   T + ++ ++ I I   +  V     L  A + I ++
Sbjct: 192 ELFDTEIDSIRSFDIATQRSLQKLQQITIAPATDMVATDQVLAAAGERITKQ 243



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y H ++   +   +I D   G +DVLV   ++  G+D+P    + I +AD  G     
Sbjct: 856 VGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGL---- 911

Query: 669 TSLIQTIGRAARN 681
           + L Q  GR  R+
Sbjct: 912 SQLYQLRGRIGRS 924


>gi|167855886|ref|ZP_02478636.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis 29755]
 gi|167852974|gb|EDS24238.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis 29755]
          Length = 441

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L+E L +R IR  Y+  E+   +R + I  L+ G  +VLV  ++  
Sbjct: 251 RSIVFVRRRESVRELSETLRKRGIRSTYLEGEMAQTQRNQAIARLKDGVVNVLVATDVAA 310

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D        S  + +  IGR AR
Sbjct: 311 RGIDIDDVDFVINFD-----LPYSADTYLHRIGRTAR 342


>gi|168022304|ref|XP_001763680.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685173|gb|EDQ71570.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 549

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 9/110 (8%)

Query: 586 LLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++  +  RM  DL          I+ R +H E    +R E +++  +G+  V+V   +L 
Sbjct: 391 VVVFVNSRMGSDLLAEAIRTVTGIQARSLHGEKSIKDRRETLKNFLMGEIPVIVATGVLG 450

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYAD 691
            GLD+     V I D     F  S    I  IGRA+R  N  S ++   D
Sbjct: 451 RGLDLLRVTQVIIFD-----FPSSIEEYIHMIGRASRLSNAGSAMVFVND 495


>gi|156548982|ref|XP_001607217.1| PREDICTED: similar to CG7922-PA [Nasonia vitripennis]
          Length = 1498

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           K  E++  + D R  K +VL+  ++  EGLD+ E  L+   D        + T L+Q +G
Sbjct: 444 KQKEQLAALEDFRNDKVNVLISTSVGEEGLDVGEVDLIICFDISSS----TPTRLVQRMG 499

Query: 677 RAARNVNSKVIL 688
           R  R  + +V++
Sbjct: 500 RTGRKRSGRVVI 511


>gi|156100409|ref|XP_001615932.1| helicase [Plasmodium vivax SaI-1]
 gi|148804806|gb|EDL46205.1| helicase, putative [Plasmodium vivax]
          Length = 528

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RI++ V TK+ A+ +T+ L    +    +H + K  ER  ++ D + GK  +L+  ++  
Sbjct: 362 RIIVFVETKKNADFITKALRLDGVPALCIHGDKKQDERRWVLNDFKTGKSPILIATDVAS 421

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLDI +   V   D     F       +  IGR  R
Sbjct: 422 RGLDIKDVKYVINFD-----FPNQIEDYVHRIGRTGR 453


>gi|138894691|ref|YP_001125144.1| primosome assembly protein PriA [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266204|gb|ABO66399.1| Primosomal protein N [Geobacillus thermodenitrificans NG80-2]
          Length = 801

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 153 QPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQR---PAIVMAPNKILAAQ 208
           Q  A+A +   + +RE +  LL GVTGSGKT    + IE + R    AIV+ P   L  Q
Sbjct: 268 QTKALAAITASVRAREHRTFLLYGVTGSGKTEVYMQAIEEVLRQGKEAIVLVPEISLTPQ 327

Query: 209 LYSEFKN-FFPHNAV 222
           +   FK  F P  AV
Sbjct: 328 MVERFKGRFGPKVAV 342


>gi|126658851|ref|ZP_01729994.1| primosome assembly protein PriA [Cyanothece sp. CCY0110]
 gi|126619801|gb|EAZ90527.1| primosome assembly protein PriA [Cyanothece sp. CCY0110]
          Length = 850

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIG 676
           ++ +   G+ D+LVG  +L +GLD+ +  LV ++ AD   +L       R+  +L Q  G
Sbjct: 647 LLEEFSRGEADILVGTQMLTKGLDLAQVTLVGVVSADGLLYLSDYRAAERAFQTLTQVAG 706

Query: 677 RAARN 681
           RA R 
Sbjct: 707 RAGRG 711


>gi|92115360|ref|YP_575288.1| ATP-dependent DNA helicase RecG [Chromohalobacter salexigens DSM
           3043]
 gi|91798450|gb|ABE60589.1| ATP-dependent DNA helicase RecG [Chromohalobacter salexigens DSM
           3043]
          Length = 697

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 8/105 (7%)

Query: 589 VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
            LT + AE    +L E   ++ V  +H  +K  E+ E++     G+ D+LV   ++  G+
Sbjct: 501 ALTCQAAEATHAHLGEALPDLAVGLVHGRMKAGEKAEVMAAFTSGELDLLVATTVIEVGV 560

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILY 689
           D+P   L+ I + ++ G     + L Q  GR  R       V+LY
Sbjct: 561 DVPNASLMIIENPERLGL----SQLHQLRGRVGRGATESFCVLLY 601


>gi|74007704|ref|XP_549061.2| PREDICTED: similar to Chromosome-associated kinesin KIF4A
           (Chromokinesin) [Canis familiaris]
          Length = 1234

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 15/144 (10%)

Query: 147 YHPSGDQP----AAIAQLLKGIHSREKVQLLL-GVTGSGKTFTMAKVIEAMQ--RPAIVM 199
           + PS +Q      A+A L+KGI       +L  G TGSGKT++M     A Q   P + +
Sbjct: 55  FDPSTEQEEVFNTAVAPLIKGIFKGYNATVLAYGQTGSGKTYSMGGAYTADQENEPTVGV 114

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYF--VSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
            P  I   QL   FK     + +E+   VSY + Y  E       +  EK S IN + D 
Sbjct: 115 IPRVI---QLL--FKEIDKKSDIEFTLKVSYLEIYNEEILDLLCPSR-EKASQINIREDP 168

Query: 258 MRHSATRSLLERNDCIVVSSVSCI 281
                   L E+   + + +VSC+
Sbjct: 169 KEGIKIVGLTEKTVVVALDTVSCL 192


>gi|325928058|ref|ZP_08189271.1| transcription-repair coupling factor Mfd [Xanthomonas perforans
           91-118]
 gi|325541556|gb|EGD13085.1| transcription-repair coupling factor Mfd [Xanthomonas perforans
           91-118]
          Length = 1110

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I + +     + LER+ +  D +  +F+VL+   ++  G+DIP   
Sbjct: 788 RMQRDLSELVPEARIGIAHGQMPERELERVML--DFQKQRFNVLLSTTIIESGIDIPNAN 845

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD+ G       L Q  GR  R+
Sbjct: 846 TIIINRADRFGL----AQLHQLRGRVGRS 870


>gi|313623260|gb|EFR93506.1| primosomal protein N' [Listeria innocua FSL J1-023]
          Length = 558

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     ++++  R  + D+L+G  ++ +GLD P
Sbjct: 319 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLKSFRNHEADILLGTQMIAKGLDFP 377

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 378 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 416


>gi|296194577|ref|XP_002745047.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 3
           [Callithrix jacchus]
          Length = 690

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 508 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRSGKCPVLVATSVAA 567

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ + I + D
Sbjct: 568 RGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 611


>gi|293192359|ref|ZP_06609470.1| ATP-dependent DNA helicase RecG [Actinomyces odontolyticus F0309]
 gi|292820274|gb|EFF79268.1| ATP-dependent DNA helicase RecG [Actinomyces odontolyticus F0309]
          Length = 715

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 14/116 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER----NIRVRYMHSEVKTLERIEII 625
           D  D++  A ++G R L +V      E++T YL        I +  +     +  + +I+
Sbjct: 498 DASDDVADAEEEGARPLASV------EEVTAYLRSHPALSGIAIHELTGRTPSPVKAQIM 551

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            D   G+  +LV   ++  G+D+ E  L+ ILDA + G       L Q  GR  R+
Sbjct: 552 EDFSTGRAPLLVATTVIEVGVDVSEATLMVILDAQQFGL----AQLHQLRGRVGRS 603


>gi|284047691|ref|YP_003398030.1| primosomal protein N' [Acidaminococcus fermentans DSM 20731]
 gi|283951912|gb|ADB46715.1| primosomal protein N' [Acidaminococcus fermentans DSM 20731]
          Length = 797

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 10/110 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +I++  R G ++VL+G  ++ +G DIP   LV +L AD +  L       R    L Q  
Sbjct: 593 QILQAFRSGLYNVLLGTQMVAKGHDIPNVTLVGVLSADSQLNLPDFRSGERCFALLTQAA 652

Query: 676 GRAARNVNSKVILYA--DTITKSIQLAIDETTRRREK-QLEHNKKHNINP 722
           GRA R      +++   D     +QLA  +      K +LE  K+ +  P
Sbjct: 653 GRAGRGDKPGEVIFQAYDAENPILQLAARQDYEGFAKMELEQRKELSYPP 702


>gi|226307271|ref|YP_002767231.1| ATP-dependent DNA helicase [Rhodococcus erythropolis PR4]
 gi|226186388|dbj|BAH34492.1| putative ATP-dependent DNA helicase [Rhodococcus erythropolis PR4]
          Length = 709

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++  LT   A DL   L ER   V     +    ER  + +DL   +   LV  + L  G
Sbjct: 263 IIYTLTVSAARDLASLLSERGHTVAAYTGQTDPTERESLEQDLLGNRVKALVATSALGMG 322

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSI 697
            D P+ G V  L A       S  S  Q +GRA R+ + + VIL      K I
Sbjct: 323 FDKPDLGFVVHLGAPS-----SPISYYQQVGRAGRSTDRADVILLPGAEDKQI 370


>gi|116787191|gb|ABK24405.1| unknown [Picea sitchensis]
          Length = 408

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R
Sbjct: 267 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFR 321

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 322 AGTTRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 367


>gi|160902853|ref|YP_001568434.1| DEAD/DEAH box helicase domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160360497|gb|ABX32111.1| DEAD/DEAH box helicase domain protein [Petrotoga mobilis SJ95]
          Length = 974

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 13/113 (11%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           I++  +H      E I+ I DL  G  D+L+   ++  G+DIP    + + D ++ G   
Sbjct: 679 IKIAMVHGGTPKKEFIKSINDLYDGNIDLLLSTTIIENGIDIPNVNTLILDDPERYGI-- 736

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
             + L Q  GR  R+ N +  +Y         L   E T + +K+LE  K++N
Sbjct: 737 --SQLYQIKGRVGRS-NRRAFVYF--------LFKKEVTPQTKKRLEAIKQYN 778


>gi|6808033|emb|CAB70746.1| hypothetical protein [Homo sapiens]
          Length = 240

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 53  VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 112

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 113 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 161

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 162 VLMDLKALLLEAKQKVPP 179


>gi|125975219|ref|YP_001039129.1| excinuclease ABC subunit C [Clostridium thermocellum ATCC 27405]
 gi|256003119|ref|ZP_05428111.1| excinuclease ABC, C subunit [Clostridium thermocellum DSM 2360]
 gi|281419193|ref|ZP_06250209.1| excinuclease ABC, C subunit [Clostridium thermocellum JW20]
 gi|189038042|sp|A3DJ07|UVRC_CLOTH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|125715444|gb|ABN53936.1| Excinuclease ABC subunit C [Clostridium thermocellum ATCC 27405]
 gi|255992810|gb|EEU02900.1| excinuclease ABC, C subunit [Clostridium thermocellum DSM 2360]
 gi|281407059|gb|EFB37321.1| excinuclease ABC, C subunit [Clostridium thermocellum JW20]
 gi|316939383|gb|ADU73417.1| excinuclease ABC, C subunit [Clostridium thermocellum DSM 1313]
          Length = 625

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +K L K M  AADNL FE AARIRD+I  LK
Sbjct: 207 IKKLEKDMKEAADNLEFERAARIRDKINSLK 237


>gi|326334855|ref|ZP_08201056.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692892|gb|EGD34830.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 1108

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 91/210 (43%), Gaps = 18/210 (8%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY-YQ 233
           G+ GS  +F ++++ +  ++    +  +K  AA L ++ +     + V +F S Y   YQ
Sbjct: 33  GIVGSAISFVLSEIFKQTKQTLFFVGDDKEQAAYLLNDLELLLGQDQVLFFPSSYRRPYQ 92

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQ 292
            E     TD             + +  +   S +++   +VVS    ++  + + +   +
Sbjct: 93  TE----ETDN-----------ANVLLRAEVLSHIQKEAKVVVSYSEALFEKVLTRQQLEK 137

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             + LK+G+ +    L   L + Q+ R D     G F V G  +++F S   D  +R+  
Sbjct: 138 NTLTLKVGEQLSLDTLNEVLFEYQFNRVDFVSEPGEFSVRGGIVDVF-SFSNDTPYRIEF 196

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           F + IE I  F   T   I+ V ++ I  N
Sbjct: 197 FSDVIESIRSFDVETQLSIQQVPSVVIIPN 226


>gi|325335423|gb|ADZ11697.1| Transcription-repair coupling factor (superfamily II helicase)
           [Riemerella anatipestifer RA-GD]
          Length = 1097

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 96/221 (43%), Gaps = 28/221 (12%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF-VSYYDYYQ 233
           G+ GS  +   A++     +P +++  +K  A    +E +     + V YF  ++ + YQ
Sbjct: 37  GMAGSSPSLICAELFLTQNQPILLIVDDKEDAHYTTTELEELLGEDKVLYFPATHLEPYQ 96

Query: 234 PEA-----YVPRTDTYIEKESSINEQIDRMRHSA-TRSLLERNDCIVVSSVSCIYGIGSV 287
            E       V RT+   +  ++   ++    ++A    +L++ D   +S           
Sbjct: 97  TEKTQNANLVLRTEVLNQLNANPEPKVIVAHYAALCEKVLKKEDFKAISH---------- 146

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQ-QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                    +K+G  ++  +    L++Q  +   D     G F V G  +++F S+  D 
Sbjct: 147 --------HIKVGYQLD-FDFTGELLEQFNFHLTDFVSEPGEFAVRGGIVDVF-SYANDK 196

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            +R++ FGN++E I  F   T   I  VE++++ +N ++  
Sbjct: 197 PYRITFFGNEVESIKTFDIETQLSISKVESLQLVSNMNFAV 237



 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H ++   +  E I D   G++DVLV   ++  G+D+P    + I DA + G    
Sbjct: 794 RVITGHGQMDGKQLEENILDFMEGRYDVLVSTTIVESGVDVPNANTIFINDAQRFGM--- 850

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
              + Q  GR  R+ N K   Y   IT    +   +  +R E
Sbjct: 851 -ADVHQMRGRVGRS-NRKAFCY--LITPPFDMVTSDARKRLE 888


>gi|322833632|ref|YP_004213659.1| transcription-repair coupling factor [Rahnella sp. Y9602]
 gi|321168833|gb|ADW74532.1| transcription-repair coupling factor [Rahnella sp. Y9602]
          Length = 1147

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 57/301 (18%), Positives = 129/301 (42%), Gaps = 36/301 (11%)

Query: 173 LLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           LLG +TGS      A++ E    P +++AP+   A +L  E + F  +  +   ++ ++ 
Sbjct: 18  LLGQLTGSACALECAQISERHTGPILLIAPDMQNALRLRDEIQQFTDNKVLS--IADWET 75

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
              +++ P  +    + SS+ +             +ER   I++   + +  +   E   
Sbjct: 76  LPYDSFSPHQEIISSRLSSLYQL----------PTMERG-IIILPVNTLMQRVCPHEFLH 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + +K G  + + +L + L +  Y+  D  +  G F   G  ++++P   E+  +R+ 
Sbjct: 125 GHALVMKKGQQLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEE-PYRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            F ++I+ +  F   T + +  VE I +     + T +  +       +E+ ++R     
Sbjct: 184 FFDDEIDSLRIFDVDTQRTLSEVEHINLLPAHEFPTDKNAIELFRSQWREKFEVRR---- 239

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                 +A+ + Q+++         G+  +   Y + L      +P  TLF Y+PE++L+
Sbjct: 240 ------DAEHVYQQVS--------KGTFPAGIEYWQPLFF---SQPLTTLFSYLPENTLV 282

Query: 472 F 472
            
Sbjct: 283 L 283


>gi|257899371|ref|ZP_05679024.1| ATP-dependent DNA helicase RecG [Enterococcus faecium Com15]
 gi|257837283|gb|EEV62357.1| ATP-dependent DNA helicase RecG [Enterococcus faecium Com15]
          Length = 678

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 29/197 (14%)

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELE-----QCQGIIVEQIIRPTGLVDPPVEIRSART- 566
           LR + W   RP  + ++ATP    L      +    I++++  P G +  P+E R  RT 
Sbjct: 395 LREKGW---RPDVLFMTATPIPRTLAITAYGEMDVSIIDEL--PAGRI--PIETRWVRTP 447

Query: 567 QVEDVYDEI--NLAAQQGLRILLTVLTKRMAEDLTEY--LYER-------NIRVRYMHSE 615
           Q++ V D     LA    + ++  ++ +  A D+     +YE+          V  +H +
Sbjct: 448 QLDSVLDWTRKELARGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGK 507

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  E+  I+   +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  
Sbjct: 508 MKNQEKEVIMEAFKDNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLR 563

Query: 676 GRAARNVN-SKVILYAD 691
           GR  R  + S  IL A+
Sbjct: 564 GRVGRGSDASYCILVAN 580


>gi|229154613|ref|ZP_04282730.1| DNA/RNA helicase [Bacillus cereus ATCC 4342]
 gi|228629011|gb|EEK85721.1| DNA/RNA helicase [Bacillus cereus ATCC 4342]
          Length = 781

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 11/100 (11%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   + R A  L+ Y  E       +HSE K + R + I+ L   + D +  ++L  
Sbjct: 417 RTIVFCSSIRQAVFLSTYFNENGYSTISLHSETKHISREDAIKQLDNNELDAIFTVDLFN 476

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSL---IQTIGRAAR 680
           EG+DIP          D   F+R   SL    Q IGR  R
Sbjct: 477 EGVDIP--------SVDTLLFVRPTESLTIFTQQIGRGLR 508


>gi|219872069|ref|YP_002476444.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis SH0165]
 gi|219692273|gb|ACL33496.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis SH0165]
          Length = 441

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L+E L +R IR  Y+  E+   +R + I  L+ G  +VLV  ++  
Sbjct: 251 RSIVFVRRRESVRELSETLRKRGIRSTYLEGEMAQTQRNQAIARLKDGVVNVLVATDVAA 310

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D        S  + +  IGR AR
Sbjct: 311 RGIDIDDVDFVINFD-----LPYSADTYLHRIGRTAR 342


>gi|196229584|ref|ZP_03128449.1| transcription-repair coupling factor [Chthoniobacter flavus
           Ellin428]
 gi|196226816|gb|EDY21321.1| transcription-repair coupling factor [Chthoniobacter flavus
           Ellin428]
          Length = 1082

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/204 (18%), Positives = 90/204 (44%), Gaps = 14/204 (6%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           V  + + F  A +++  +    ++ PN      +++E   +FP      F    D    E
Sbjct: 35  VVAAAQPFLAALLVQQAKARVWIVCPNVRTQETMHNELLQWFPDA---LFFPEIDRAPVE 91

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
             +P  ++  E+   +     R+     R +      +V++  S    + S  +  Q+ +
Sbjct: 92  GALPDPESIAERLGIVQ----RLTSVKGRQV------VVLTRASLDDEVPSPAALKQLEI 141

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
           +L+    +++++LL  L +  Y+       RG F V G  +++F  H   +  R+ +F +
Sbjct: 142 RLRRSTRLDREKLLKQLAEAGYEHVPQVSARGQFAVRGGILDVFSFH-HSLPVRIELFDD 200

Query: 356 DIEEISEFYPLTGQKIRNVETIKI 379
           +I+ + EF   T   +++++T+ +
Sbjct: 201 EIDSLREFDLDTQISVQHLDTVTL 224


>gi|182413406|ref|YP_001818472.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177840620|gb|ACB74872.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
          Length = 403

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+   T+  A+ +   L  +   V  MHS+    ERIE +   + GKF+VLV  ++   
Sbjct: 243 VLIFCRTRMGADRIAHRLKTKGHTVGVMHSDRSQRERIEALDGFKSGKFEVLVATDIAAR 302

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           GLDI   G+  +++ D      +    +  IGR  R
Sbjct: 303 GLDI--AGVSHVINYDVP---ENPEDYVHRIGRTGR 333


>gi|171318122|ref|ZP_02907290.1| DEAD/H associated domain protein [Burkholderia ambifaria MEX-5]
 gi|171096690|gb|EDT41576.1| DEAD/H associated domain protein [Burkholderia ambifaria MEX-5]
          Length = 1503

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSEVKTLERIEIIR 626
           E VYD I   A      L+ V T+R AE +  +L ER  +  +   H  +    R +  +
Sbjct: 269 EQVYDRIAALAAAHRTTLVFVNTRRTAERMARHLAERLGKDAIAAHHGSLAKEHRFDAEQ 328

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            L+ G+  +LV    L  G+DI +  LV      + G  R     +Q +GR+  +V  
Sbjct: 329 RLKRGELKLLVATASLELGIDIGDVDLVC-----QVGSPRGIAPFLQRVGRSGHHVGG 381


>gi|153955940|ref|YP_001396705.1| RNA helicase [Clostridium kluyveri DSM 555]
 gi|219856282|ref|YP_002473404.1| hypothetical protein CKR_2939 [Clostridium kluyveri NBRC 12016]
 gi|146348798|gb|EDK35334.1| Predicted RNA helicase [Clostridium kluyveri DSM 555]
 gi|219570006|dbj|BAH07990.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 524

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 6/100 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E +  R   V  MH ++   +R+  +R  + G  D LV  ++   G+D+  
Sbjct: 252 TKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLDFLVATDVAARGIDVEN 311

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              V   D  ++       S +  IGR  R  N + I Y+
Sbjct: 312 VSHVINYDLPQD-----TESYVHRIGRTGR-ANKEGIAYS 345


>gi|118470234|ref|YP_889292.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium smegmatis str. MC2 155]
 gi|118171521|gb|ABK72417.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium smegmatis str. MC2 155]
          Length = 581

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 8/151 (5%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  ++G  +++ V TK+  E++ + L  R      ++ ++   +R   I  L+ G  D+L
Sbjct: 255 LEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDIL 314

Query: 637 VGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +  ++   GLD+     V   D   D E ++      I   GRA R  +   +L+     
Sbjct: 315 IATDVAARGLDVERISHVINYDIPHDTESYVHR----IGRTGRAGR--SGHAVLFVTPRE 368

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           + +  +I++ TR +  + E     ++N Q V
Sbjct: 369 RHLLKSIEKATRSKLIEAELPSVEDVNAQRV 399


>gi|11890755|gb|AAF78930.2|AAF78930 RNA helicase II/Gu protein [Homo sapiens]
          Length = 715

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  QG R ++   TK+ A++L++    +    + +H ++   +R   ++  R G F VLV
Sbjct: 367 SGHQG-RTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFRNGSFGVLV 424

Query: 638 GINLLREGLDIPECGLV 654
             N+   GLDIPE  LV
Sbjct: 425 ATNVAARGLDIPEVDLV 441


>gi|71749190|ref|XP_827934.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70833318|gb|EAN78822.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 660

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +G  +L+ V  KR A+ L  +L    +    +H +    ER E +R  + G   VL
Sbjct: 407 LRENEGKLVLVFVEKKRDADYLERFLRNSELACVSIHGDRVQREREEALRLFKSGACQVL 466

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLDIP  G+V   D        +    +  IGR  R
Sbjct: 467 VATDVASRGLDIPNVGVVIQYDMPS-----NIDDYVHRIGRTGR 505


>gi|186686894|ref|YP_001870087.1| ATP-dependent DNA helicase RecQ [Nostoc punctiforme PCC 73102]
 gi|186469246|gb|ACC85046.1| ATP-dependent DNA helicase, RecQ family [Nostoc punctiforme PCC
           73102]
          Length = 1675

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 13/126 (10%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           PV     +  +E V + I L    G   L+   T++ AE L E L + +I+ +Y H ++ 
Sbjct: 478 PVAGNKEQVLLEQVKEAIKL----GGSTLVYTTTRKNAEKLAELLNQSHIKAKYYHGKLA 533

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA--ILDADKEGFLRSKTSLIQTI 675
             ++ E++++ + GK +V+        G++  +   V    + A+ EG+       +Q  
Sbjct: 534 KEKKQEVLQEFKSGKLNVITATCAFGMGINRKDVRAVIHHSMSANLEGY-------VQEA 586

Query: 676 GRAARN 681
           GRA R+
Sbjct: 587 GRAGRD 592


>gi|325299294|ref|YP_004259211.1| primosomal protein N' [Bacteroides salanitronis DSM 18170]
 gi|324318847|gb|ADY36738.1| primosomal protein N' [Bacteroides salanitronis DSM 18170]
          Length = 819

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  
Sbjct: 613 KIISDFEEGKTDILIGTQMVSKGLDFDRVSVVGILNADSMLNYPDFRSYERAFQLMAQVA 672

Query: 676 GRAARNVNSKVIL 688
           GRA R     +++
Sbjct: 673 GRAGRKSKRGLVV 685


>gi|302854756|ref|XP_002958883.1| eukaryotic initiation factor [Volvox carteri f. nagariensis]
 gi|300255785|gb|EFJ40071.1| eukaryotic initiation factor [Volvox carteri f. nagariensis]
          Length = 400

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE + + N  V  MH ++   ER  I+ + R
Sbjct: 259 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMRQNNFTVASMHGDMVQKEREAIMGEFR 313

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 314 SGAARVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 359


>gi|227550756|ref|ZP_03980805.1| DNA helicase RecG [Enterococcus faecium TX1330]
 gi|257896396|ref|ZP_05676049.1| ATP-dependent DNA helicase RecG [Enterococcus faecium Com12]
 gi|293379481|ref|ZP_06625625.1| ATP-dependent DNA helicase RecG [Enterococcus faecium PC4.1]
 gi|227180074|gb|EEI61046.1| DNA helicase RecG [Enterococcus faecium TX1330]
 gi|257832961|gb|EEV59382.1| ATP-dependent DNA helicase RecG [Enterococcus faecium Com12]
 gi|292642004|gb|EFF60170.1| ATP-dependent DNA helicase RecG [Enterococcus faecium PC4.1]
          Length = 678

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 29/197 (14%)

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELE-----QCQGIIVEQIIRPTGLVDPPVEIRSART- 566
           LR + W   RP  + ++ATP    L      +    I++++  P G +  P+E R  RT 
Sbjct: 395 LREKGW---RPDVLFMTATPIPRTLAITAYGEMDVSIIDEL--PAGRI--PIETRWVRTP 447

Query: 567 QVEDVYDEI--NLAAQQGLRILLTVLTKRMAEDLTEY--LYER-------NIRVRYMHSE 615
           Q++ V D     LA    + ++  ++ +  A D+     +YE+          V  +H +
Sbjct: 448 QLDSVLDWTRKELARGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGK 507

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  E+  I+   +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  
Sbjct: 508 MKNQEKEVIMEAFKDNQMQILVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLR 563

Query: 676 GRAARNVN-SKVILYAD 691
           GR  R  + S  IL A+
Sbjct: 564 GRVGRGSDASYCILVAN 580


>gi|303271803|ref|XP_003055263.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463237|gb|EEH60515.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 394

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R
Sbjct: 253 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMRANNFTVSAMHGDMPQKERDAIMGEFR 307

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R
Sbjct: 308 GGTTRVLITTDVWARGIDVQQVSLVINYD-----LPNNRENYIHRIGRSGR 353


>gi|188529679|gb|ACD62526.1| Vasa short form [Silurus meridionalis]
          Length = 641

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R G+  VLV  ++  
Sbjct: 457 RTMVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALGDFRTGQCPVLVATSVAA 516

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLDI +   V   D  K          +  IGR  R  N+
Sbjct: 517 RGLDIEQVQNVINFDLPK-----YIDEYVHRIGRTGRCGNT 552


>gi|194758757|ref|XP_001961625.1| GF15062 [Drosophila ananassae]
 gi|190615322|gb|EDV30846.1| GF15062 [Drosophila ananassae]
          Length = 819

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 34/149 (22%)

Query: 87  SEKQTREISEQTMTPSVQALARLIQSD-NPLLKNGKIWTPHRSWSINNHSKDITFFQMQT 145
           SEK   E++E+          R+ + D N  +K GKI  P RSWS +   ++I     + 
Sbjct: 358 SEKDNDEMTERDW--------RIFREDYNITIKGGKIPNPIRSWSESGFPREIIDIIDKV 409

Query: 146 DY-HPSGDQPAAIAQLLKGIHSREKVQLLLGV--TGSGKTFT--------------MAKV 188
            Y  P+  Q  AI     G+ +R+    ++GV  TGSGKT                + ++
Sbjct: 410 GYKEPTPIQRQAIPI---GLQNRD----IIGVAETGSGKTLAFLIPLLSWIQSLPKIERL 462

Query: 189 IEAMQRP-AIVMAPNKILAAQLYSEFKNF 216
            +  Q P AI+MAP + LA Q+  E   F
Sbjct: 463 EDVDQGPYAIIMAPTRELAQQIEEETTKF 491


>gi|115437436|ref|NP_001043295.1| Os01g0549400 [Oryza sativa Japonica Group]
 gi|143455968|sp|Q5JKF2|RH40_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 40
 gi|57899403|dbj|BAD88050.1| putative ATP-dependent RNA helicase DB10 [Oryza sativa Japonica
           Group]
 gi|113532826|dbj|BAF05209.1| Os01g0549400 [Oryza sativa Japonica Group]
 gi|125570769|gb|EAZ12284.1| hypothetical protein OsJ_02174 [Oryza sativa Japonica Group]
          Length = 792

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G ++L+   TKRM + L   L  R      +H +    ER +++   R G+  +LV  ++
Sbjct: 395 GSKVLIFCTTKRMCDQLARTL-TRQFGASAIHGDKSQSEREKVLSHFRSGRSPILVATDV 453

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              GLDI +  +V   D     F       +  IGR  R
Sbjct: 454 AARGLDIKDIRVVINYD-----FPTGIEDYVHRIGRTGR 487


>gi|52425790|ref|YP_088927.1| RecG protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307842|gb|AAU38342.1| RecG protein [Mannheimia succiniciproducens MBEL55E]
          Length = 693

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H  +K  E+  I+   +  + D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 517 HLRIGLVHGRMKPAEKQAIMASFKAAELDLLVATTVIEVGVDVPNASLMIIENAERLGL- 575

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITK 695
              + L Q  GR  R   +   V++Y   + K
Sbjct: 576 ---SQLHQLRGRVGRGSTASFCVLMYKPPLGK 604


>gi|332972878|gb|EGK10821.1| DNA helicase RecG [Kingella kingae ATCC 23330]
          Length = 680

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +++  +H  +K  E+  ++ +   G  +VLV   ++  G+D+P   L+ I  A++ G  
Sbjct: 504 QLKIGLVHGRMKAAEKAAVMAEFISGSLNVLVATTVIEVGVDVPNASLMVIEHAERMGL- 562

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTI 693
                L Q  GR  R   +   V+L+A+ +
Sbjct: 563 ---AQLHQLRGRVGRGAAASTCVLLFAEPL 589


>gi|328950754|ref|YP_004368089.1| transcription-repair coupling factor [Marinithermus hydrothermalis
           DSM 14884]
 gi|328451078|gb|AEB11979.1| transcription-repair coupling factor [Marinithermus hydrothermalis
           DSM 14884]
          Length = 985

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+  +H ++   E  E++   + G FD+LV   ++  GLDIPE   + I  ADK G    
Sbjct: 688 RIGVVHGQMPEDEIEEVMFLFQEGAFDLLVATTIVESGLDIPEANTILIERADKLGL--- 744

Query: 668 KTSLIQTIGRAAR 680
             +L Q  GR  R
Sbjct: 745 -ANLYQLRGRVGR 756


>gi|327478768|gb|AEA82078.1| ATP-dependent DNA helicase RecG [Pseudomonas stutzeri DSM 4166]
          Length = 690

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL+  L    +RV  +H  +K  E+  ++   + G+  +LV   ++  G+D+P   L+ 
Sbjct: 506 EDLSAALV--GLRVGLIHGRMKPAEKAAVMEQFKRGELQLLVATTVIEVGVDVPNASLMI 563

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I + ++ G       L Q  GR  R   +   V+LY   +++
Sbjct: 564 IENPERLGL----AQLHQLRGRVGRGSAASHCVLLYHPPLSQ 601


>gi|325916554|ref|ZP_08178820.1| transcription-repair coupling factor Mfd [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537227|gb|EGD08957.1| transcription-repair coupling factor Mfd [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 1155

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL E + E  I + +     + LER+ +  D +  +F+VL+   ++  G+DIP   
Sbjct: 833 RMQRDLAELVPEARIGIAHGQMPERELERVML--DFQKQRFNVLLSTTIIESGIDIPNAN 890

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD+ G       L Q  GR  R+
Sbjct: 891 TIIINRADRFGL----AQLHQLRGRVGRS 915


>gi|313608144|gb|EFR84197.1| primosomal protein N' [Listeria monocytogenes FSL F2-208]
          Length = 243

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     ++++  R  + D+L+G  ++ +GLD P
Sbjct: 4   TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLKSFRNHEADILLGTQMIAKGLDFP 62

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 63  DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 101


>gi|313680042|ref|YP_004057781.1| transcription factor card [Oceanithermus profundus DSM 14977]
 gi|313152757|gb|ADR36608.1| transcription factor CarD [Oceanithermus profundus DSM 14977]
          Length = 986

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           R+  +H  +   E  E++R    G FD+LV   ++  GLDIPE   + I  AD+ G 
Sbjct: 689 RIGVVHGRMADREIEEVMRHFARGAFDLLVATTIVESGLDIPEANTILIERADRLGL 745


>gi|313892557|ref|ZP_07826144.1| ATP-dependent DNA helicase RecG [Dialister microaerophilus UPII
           345-E]
 gi|313118954|gb|EFR42159.1| ATP-dependent DNA helicase RecG [Dialister microaerophilus UPII
           345-E]
          Length = 678

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 5/57 (8%)

Query: 171 QLLLGVTGSGKT----FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +LL G  GSGKT     T AK++E   + A +MAP ++LA+Q Y  F N + + +VE
Sbjct: 282 RLLQGDVGSGKTAIAALTAAKIVENGYQ-ATIMAPTEVLASQHYKTFLNLYKNLSVE 337


>gi|307262320|ref|ZP_07543968.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306867983|gb|EFM99811.1| ATP-dependent DNA helicase recG [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 693

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL   L   ++R+  +H  +K  E+  I+ + +    D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLQRAL--PDLRIGLVHGRMKPQEKQAIMAEFKAANIDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I ++++ G       L Q  GR  R   +   V+LY   + K
Sbjct: 567 IENSERLGL----AQLHQLRGRVGRGATASHCVLLYKPPLGK 604


>gi|302872126|ref|YP_003840762.1| primosomal protein N' [Caldicellulosiruptor obsidiansis OB47]
 gi|302574985|gb|ADL42776.1| primosomal protein N' [Caldicellulosiruptor obsidiansis OB47]
          Length = 724

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 17/110 (15%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI--EIIRDLRLGKFDVLVGINLLREGLDI 648
           T+++ E++  Y   ++ RV  M S+  + +    +I++  R  + D+LVG  ++ +GL  
Sbjct: 488 TQKIEEEIKAYF--KDARVLRMDSDTTSKKDATEQILKKFREKEADILVGTQMIAKGLHF 545

Query: 649 PECGLVAILDAD----------KEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           P+  LV ++DAD          +E   R+   L Q  GR+ R    KVI+
Sbjct: 546 PDLTLVGVIDADILLNMPDFRSRE---RTFQLLTQVAGRSGREKPGKVII 592


>gi|304310488|ref|YP_003810086.1| ATP-dependent RNA helicase [gamma proteobacterium HdN1]
 gi|301796221|emb|CBL44429.1| ATP-dependent RNA helicase [gamma proteobacterium HdN1]
          Length = 527

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR AEDL+  L +    V  +H ++    R   +  LR G+  +LV  ++   G+D+  
Sbjct: 254 TKRAAEDLSNTLRDEGFSVEALHGDMHQKLRNRTLTKLRQGRIGILVATDVAARGIDV-- 311

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  +++ D    +      I   GRA R
Sbjct: 312 VGISHVINYDPPRQVEDYVHRIGRTGRAGR 341


>gi|253733085|ref|ZP_04867250.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728993|gb|EES97722.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 517

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++LV  ++   GLDI  
Sbjct: 260 TKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDI-- 317

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 318 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 347


>gi|197337466|ref|YP_002157976.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
 gi|197314718|gb|ACH64167.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
          Length = 640

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 6/131 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++   +R   + +++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 309 LDVPR--ITHVFNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQMRMLRTIERVT 364

Query: 706 RR--REKQLEH 714
           +    E QL H
Sbjct: 365 KSTMEEIQLPH 375


>gi|153825002|ref|ZP_01977669.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
 gi|149741327|gb|EDM55361.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
          Length = 464

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVY--------DEINLAAQQG--LRILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y        D +    ++G   ++L+ + TK  A 
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L  YL E+ +    +H       R   + D + G+  +LV  ++   G+DIP+
Sbjct: 258 RLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQ 311


>gi|146280531|ref|YP_001170684.1| ATP-dependent DNA helicase RecG [Pseudomonas stutzeri A1501]
 gi|145568736|gb|ABP77842.1| ATP-dependent DNA helicase RecG [Pseudomonas stutzeri A1501]
          Length = 690

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL+  L    +RV  +H  +K  E+  ++   + G+  +LV   ++  G+D+P   L+ 
Sbjct: 506 EDLSAALV--GLRVGLIHGRMKPAEKAAVMEQFKRGELQLLVATTVIEVGVDVPNASLMI 563

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I + ++ G       L Q  GR  R   +   V+LY   +++
Sbjct: 564 IENPERLGL----AQLHQLRGRVGRGSAASHCVLLYHPPLSQ 601


>gi|119480453|ref|XP_001260255.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
 gi|134034069|sp|A1DG51|DBP3_NEOFI RecName: Full=ATP-dependent RNA helicase dbp3
 gi|119408409|gb|EAW18358.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
          Length = 503

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 36/71 (50%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+  L K+ A  +   L  +N +V  +H ++   ER + +   + G   VLV  ++  
Sbjct: 340 KVLVFCLYKKEAVRVERLLRTKNFKVAGIHGDLNQHERFKSLEAFKTGAATVLVATDVAA 399

Query: 644 EGLDIPECGLV 654
            GLDIP   LV
Sbjct: 400 RGLDIPSVKLV 410


>gi|46908175|ref|YP_014564.1| ATP-dependent DNA helicase RecQ [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|254825563|ref|ZP_05230564.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254852843|ref|ZP_05242191.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|255521520|ref|ZP_05388757.1| ATP-dependent DNA helicase RecQ, putative [Listeria monocytogenes
           FSL J1-175]
 gi|300763748|ref|ZP_07073745.1| ATP-dependent DNA helicase RecQ [Listeria monocytogenes FSL N1-017]
 gi|46881445|gb|AAT04741.1| putative ATP-dependent DNA helicase RecQ [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|258606174|gb|EEW18782.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293594806|gb|EFG02567.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300515484|gb|EFK42534.1| ATP-dependent DNA helicase RecQ [Listeria monocytogenes FSL N1-017]
          Length = 467

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 12/106 (11%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           +K++AE     L E  ++RV Y H ++ T +RI I +    G+ DV+   +    G+D  
Sbjct: 236 SKKLAESTAHELSEIADLRVAYYHGDMDTEDRIIIQQQFVYGQLDVICATSAFGMGIDKA 295

Query: 650 ECGLVA--ILDADKEGFLRSKTSLIQTIGRAARNVNSKV--ILYAD 691
           +   V    + AD E +L       Q IGRA R+  + V  +LYA+
Sbjct: 296 DIRYVIHYHMPADLEAYL-------QEIGRAGRDGENSVAILLYAN 334


>gi|50293017|ref|XP_448941.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661092|sp|Q6FLF3|DBP2_CANGA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49528254|emb|CAG61911.1| unnamed protein product [Candida glabrata]
          Length = 544

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 2/96 (2%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TKR  +++T YL +       +H +    ER  ++ + R G   ++V  ++  
Sbjct: 359 KILIFASTKRTCDEITSYLRQDGWPALAIHGDKDQRERDWVLNEFRTGNSPIMVATDVAA 418

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            G+D+   G+  +++ D  G +      I   GRA 
Sbjct: 419 RGIDVK--GINFVVNYDMPGNIEDYVHRIGRTGRAG 452


>gi|67541074|ref|XP_664311.1| hypothetical protein AN6707.2 [Aspergillus nidulans FGSC A4]
 gi|40739335|gb|EAA58525.1| hypothetical protein AN6707.2 [Aspergillus nidulans FGSC A4]
 gi|259480293|tpe|CBF71291.1| TPA: DEAD/DEAH box helicase, putative (AFU_orthologue;
           AFUA_7G05530) [Aspergillus nidulans FGSC A4]
          Length = 643

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 72/184 (39%), Gaps = 21/184 (11%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLVA 655
           LTE   +  I  RY+        R E +   R  +F VL+   L  EG D+P  +C L+A
Sbjct: 292 LTETFRQYGIDARYITGTTPKTTRDEQLDKFRAREFPVLLNCGLFTEGTDMPNIDCVLLA 351

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYADTITKSI-------QLAIDET 704
                     RS+  LIQ IGR  R    K    +I    T+   +        L  DE 
Sbjct: 352 RP-------TRSRNLLIQMIGRGLRLYPGKKDCHIIDMVATLNTGVISTPTLFGLHPDEV 404

Query: 705 TRR-REKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
             +   K L+  K    N +  +E ++    P L +D   T    D     +   K + H
Sbjct: 405 LEKVTAKDLKERKATGQNVRDPEESLLSESGPELPDDLKLTFTKYDTIYDLIHDMKSEKH 464

Query: 764 LKSL 767
           ++SL
Sbjct: 465 IRSL 468


>gi|327441583|dbj|BAK17948.1| DNA or RNA helicase of superfamily II [Solibacillus silvestris
           StLB046]
          Length = 956

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 9/136 (6%)

Query: 554 LVDPPVEIRSA--RTQVEDVYDEINLAAQQGLRI--LLTVLTKRMAEDLTEYLYERNIRV 609
           L+D   +++    R +++ + ++I+     G R+  L+   TK  A  L+  L  R  + 
Sbjct: 416 LIDETADLQKLVHRERIDHIIEKISYYGFSGDRVRGLMFCSTKEEARTLSNLLTMRGYKT 475

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +  +    ER E I  L  G+ + ++ +++  EG+DIP    + +L        +S  
Sbjct: 476 TALTGDHSQEEREEAIAKLENGELEYILTVDIFNEGIDIPFINQIVMLRQT-----QSSI 530

Query: 670 SLIQTIGRAARNVNSK 685
             IQ +GR  R  N K
Sbjct: 531 IFIQQLGRGLRKHNVK 546


>gi|311898529|dbj|BAJ30937.1| putative ATP-dependent DNA helicase RecG [Kitasatospora setae
           KM-6054]
          Length = 739

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +    + +++R    G+ DVLV   ++  G+++P    + I+DAD+ G  
Sbjct: 555 GLRVEILHGRLAPDAKDDVMRRFAAGEVDVLVATTVIEVGVNVPNSTAMVIMDADRFGV- 613

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R   + + L
Sbjct: 614 ---SQLHQLRGRVGRGSAAGLCL 633


>gi|300215046|gb|ADJ79462.1| DNA/RNA helicase, DEAD/DEAH box family [Lactobacillus salivarius
           CECT 5713]
          Length = 735

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 9/135 (6%)

Query: 555 VDPPVEIR--SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE--DLTEYLYERNIRVR 610
           VD    +R  +A  +V+ + D+++     G ++   V   R  E  +L +   +   + +
Sbjct: 192 VDETTNLRYLTAPKRVKYILDQLDYYGYSGPKVHGLVFCSRQDEALELAKSFTDAGHQAK 251

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            + ++     R  ++R+L  GK + ++ +NL  EG+DIP    V +L        +S   
Sbjct: 252 ALTNQDSNERRRAVVRELEEGKIEYIITVNLFNEGIDIPCVNQVVMLRN-----TQSSIV 306

Query: 671 LIQTIGRAARNVNSK 685
            IQ +GR  R    K
Sbjct: 307 FIQQLGRGLRKYPGK 321


>gi|254994680|ref|ZP_05276870.1| transcription repair coupling factor (mfd) [Anaplasma marginale
           str. Mississippi]
          Length = 1099

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N++V   H    T    +I+ D   GKF VL+  +++  G+DIP    + + +AD  G  
Sbjct: 794 NVKVEVAHGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPFANTIIVHNADMFGL- 852

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R+
Sbjct: 853 ---AQLYQLKGRVGRS 865


>gi|254581160|ref|XP_002496565.1| ZYRO0D03058p [Zygosaccharomyces rouxii]
 gi|238939457|emb|CAR27632.1| ZYRO0D03058p [Zygosaccharomyces rouxii]
          Length = 395

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD I++      + ++   T+R  E+LT+ L   +  V  ++S++   ER  I+++ R
Sbjct: 253 DLYDSISVT-----QAVIFCNTRRKVEELTQKLRADSFTVSSIYSDLPQQERDVIMKEFR 307

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   +L+  +LL  G+D+ +  LV   D   +KE ++
Sbjct: 308 SGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYI 345


>gi|256822363|ref|YP_003146326.1| transcription-repair coupling factor [Kangiella koreensis DSM
           16069]
 gi|256795902|gb|ACV26558.1| transcription-repair coupling factor [Kangiella koreensis DSM
           16069]
          Length = 1140

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R  E+L E L E   R++  H +++  E  +++RD    +F+VLV   ++  G+D P  
Sbjct: 820 QRTVEELQELLPE--ARIQLAHGQMRERELEQVMRDFYHQRFNVLVCTTIVETGIDNPNA 877

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 878 NTMIIDRADKFGL----AQLHQLRGRVGRS 903


>gi|197302598|ref|ZP_03167653.1| hypothetical protein RUMLAC_01327 [Ruminococcus lactaris ATCC
           29176]
 gi|197298496|gb|EDY33041.1| hypothetical protein RUMLAC_01327 [Ruminococcus lactaris ATCC
           29176]
          Length = 1117

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V + H ++   E  +I+ D   G+ DVLV   ++  GLDI     + I DAD+ G L   
Sbjct: 805 VSFAHGQMSERELEDIMYDFINGEIDVLVSTTIIETGLDIANANTMIIQDADRFG-LSQL 863

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSI 697
             L   +GR++R   + ++   D + K +
Sbjct: 864 YQLRGRVGRSSRMAYAFLLYRRDKLLKEV 892


>gi|254381813|ref|ZP_04997176.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
 gi|194340721|gb|EDX21687.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
          Length = 518

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR A D+ E L +R      +H ++    R + +R  R GK DVLV  ++   G+D+  
Sbjct: 297 TKRTAADIAEQLEKRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEG 356

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V    A ++     + + +  +GR  R  N  + +
Sbjct: 357 VTHVINYQAPED-----EKTFLHRVGRTGRAGNKGIAV 389


>gi|194290281|ref|YP_002006188.1| dead/deah box helicase/ATP-dependent RNA helicase [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224116|emb|CAQ70125.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP-DEPENDENT
           RNA HELICASE (C-terminal)(rhlE-like) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 624

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I+ T  TKR A+ L E L +       +H ++    R   +  LR G   VLV  ++   
Sbjct: 314 IVFTA-TKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNLRVLVATDVAAR 372

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           G+D+P+   V   D  K+         +  IGR  R   S + +
Sbjct: 373 GIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGIAI 411


>gi|171914601|ref|ZP_02930071.1| primosome assembly protein PriA [Verrucomicrobium spinosum DSM
           4136]
          Length = 778

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 11/85 (12%)

Query: 608 RVRYMHSEVKTLERIEIIRD----LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           + R    +  T++R   +RD     R  K D+L+G  ++ +GLD P   LV +L+AD   
Sbjct: 554 QARLARVDTDTMQRKNQLRDTLRAFRSQKLDILIGTQMIAKGLDFPNVTLVGVLNADLAL 613

Query: 664 FL-------RSKTSLIQTIGRAARN 681
            +       R+   L Q  GRA R 
Sbjct: 614 SMPDFRAAERTFQLLTQVAGRAGRG 638


>gi|74006742|ref|XP_861537.1| PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide
           3 isoform 11 [Canis familiaris]
          Length = 646

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 417 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 475

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 476 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 534

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 535 ---NITKDL 540


>gi|162464317|ref|NP_001105848.1| putative RH2 protein [Zea mays]
 gi|84322402|gb|ABC55720.1| putative RH2 protein [Zea mays]
 gi|146217167|gb|ABQ10647.1| RNA helicase 2 [Zea mays]
 gi|194700534|gb|ACF84351.1| unknown [Zea mays]
          Length = 407

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R
Sbjct: 266 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQQERDAIMGEFR 320

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 321 SGATRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 366


>gi|330996640|ref|ZP_08320518.1| ATP-dependent DNA helicase RecG [Paraprevotella xylaniphila YIT
           11841]
 gi|329572712|gb|EGG54345.1| ATP-dependent DNA helicase RecG [Paraprevotella xylaniphila YIT
           11841]
          Length = 698

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT-MAKVIEAMQRP- 195
           TF++    +  +G Q   I ++ + + S R+  +LL G  GSGKT   +  ++ A+    
Sbjct: 259 TFYEKNLPFELTGAQKRVIREIRQDMGSGRQMNRLLQGDVGSGKTLVALMSILIALDNGF 318

Query: 196 -AIVMAPNKILAAQLYSEFKNFF 217
            A +MAP +ILA Q Y  F+N  
Sbjct: 319 QACIMAPTEILAEQHYVTFQNLL 341


>gi|327279490|ref|XP_003224489.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Anolis
           carolinensis]
          Length = 600

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  +DLT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 339 KTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 398

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 399 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 434


>gi|317124106|ref|YP_004098218.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043]
 gi|315588194|gb|ADU47491.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043]
          Length = 605

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E L E L  R      ++ ++   +R   +  LR GK D+LV  ++   
Sbjct: 268 MIVFVRTKNETETLAEKLRARGFSAAAINGDIVQAQRERTVDQLRSGKLDILVATDVAAR 327

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R+ ++  I +     + +  AI+
Sbjct: 328 GLDVERISHVVNFDIPTDTESYVHR----IGRTGRAGRSGDA--ISFVTPRERHLLKAIE 381

Query: 703 ETTRRREKQLEHNKKHNIN 721
           + TR+   ++      +IN
Sbjct: 382 KATRQGLTEMRPPTVEDIN 400


>gi|307207083|gb|EFN84892.1| Fanconi anemia group M protein [Harpegnathos saltator]
          Length = 1344

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           K  ++I+ + D R    +VL+  ++  EGLD+ E  L+   D  +     S T L+Q +G
Sbjct: 437 KQKQQIKALEDFRNNHVNVLISTSIGEEGLDVGEVDLIICFDVSQ----HSPTRLVQRMG 492

Query: 677 RAARNVNSKVIL 688
           R  R  +  +I+
Sbjct: 493 RTGRKRDGHIII 504


>gi|308071113|ref|YP_003872718.1| ComF operon protein 1 [Paenibacillus polymyxa E681]
 gi|305860392|gb|ADM72180.1| ComF operon protein 1 [Paenibacillus polymyxa E681]
          Length = 662

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 6/135 (4%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           + ++ Q+G ++ L V      + L E L ++   V    +  +  ER   +R  R  +  
Sbjct: 515 LRVSIQRGAQVFLFVTRISHIQGLVELLIKQLPDVPIAGTSSQDEERTAKVRLFRATEIR 574

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN---SKVILYAD 691
           VLV   +L  G+ +P    V +LDAD   F   + SL+Q  GRA R+ +     VI  + 
Sbjct: 575 VLVTTTILERGVTVPRSD-VYVLDADSSLF--DEASLVQMAGRAGRSKDDPCGGVIFTSP 631

Query: 692 TITKSIQLAIDETTR 706
             T+  + AI +  R
Sbjct: 632 QWTRGQKRAIRQIKR 646


>gi|293399873|ref|ZP_06644019.1| ATP-dependent RNA helicase DbpA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306273|gb|EFE47516.1| ATP-dependent RNA helicase DbpA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 477

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 24/194 (12%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  +Q    ++   T+   + + E LY  ++ V  +H  +   +RI  IRD + GK  +L
Sbjct: 234 LCKEQPASCIIFARTQEGVKTICEELYALDMCVDKLHGGMLQEDRIGNIRDFKKGKIRIL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+D+ +   +   D   +     K + +  IGR  R   S V +        
Sbjct: 294 VATDVAARGIDVQDISHIINYDMPNQ-----KETYLHRIGRTGRQSASGVAI-------- 340

Query: 697 IQLAIDETTRRREKQLEH--------NKKHNINPQSVKEKIME-VIDPILLEDAATTNIS 747
               I+E    R+ +LE          +K  +  Q VK++ +E +  P  L +     + 
Sbjct: 341 --TFINEYDGERKAELEEYLGYPLEIREKDEVRKQEVKKETIEPLTKPFALREDKGKEVH 398

Query: 748 IDAQQLSLSKKKGK 761
            D  +L L+  K K
Sbjct: 399 KDTMKLYLNGGKTK 412


>gi|283779708|ref|YP_003370463.1| transcription-repair coupling factor [Pirellula staleyi DSM 6068]
 gi|283438161|gb|ADB16603.1| transcription-repair coupling factor [Pirellula staleyi DSM 6068]
          Length = 1087

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +A  L + + E ++R+   H ++   E  +++ D   GKFD+L+   ++  GLDIP    
Sbjct: 777 IARRLNQIVPEASLRIG--HGQMNETELEQVMVDFVAGKFDLLLATTIVESGLDIPNANT 834

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           + I +A++ G       L Q  GR  R  N
Sbjct: 835 IFINEAERYGL----ADLHQLRGRVGRYKN 860


>gi|195440590|ref|XP_002068123.1| GK12420 [Drosophila willistoni]
 gi|194164208|gb|EDW79109.1| GK12420 [Drosophila willistoni]
          Length = 541

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G   VL+   L+  
Sbjct: 371 VLIFVQSKDRAKQLFEELLYDGINVDVIHAERTQHQRDNCVRAFREGNIWVLICTELMGR 430

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D     LV   D     F  +  S I  IGR  R
Sbjct: 431 GIDFKGVNLVINYD-----FPPTTISYIHRIGRTGR 461


>gi|163790825|ref|ZP_02185250.1| primosomal protein n' [Carnobacterium sp. AT7]
 gi|159873893|gb|EDP67972.1| primosomal protein n' [Carnobacterium sp. AT7]
          Length = 804

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 12/136 (8%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+++ E+L + L E  +    + +  K     +++     G+ D+L+G  ++ +GLD P 
Sbjct: 565 TQKIEEELKDVLPEAKVIRMDVDTTRKKGAHEKLLASFGKGEADILLGTQMIAKGLDFPN 624

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAAR-NVNSKVILYA-DTITKSIQLAI 701
             LV +L+AD    L       R+   L Q  GRA R  +  +VI+   +    +IQLA 
Sbjct: 625 ITLVGVLNADTGLGLPDFRASERTFQLLTQVSGRAGRAELTGEVIVQTFNPEHYAIQLAK 684

Query: 702 D---ETTRRREKQLEH 714
           D   +T  ++E  L H
Sbjct: 685 DHDYDTFYKKEMSLRH 700



 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKT-FTMAKVIEAMQ--RPA 196
           F+    +  +  Q  AI  +LK +   R +V LL GVTGSGKT   +  + + +Q  + A
Sbjct: 260 FKQTVSFQLNEGQEKAIQPILKAVSEERPEVFLLKGVTGSGKTEIYLQTIAQTLQNNKSA 319

Query: 197 IVMAPNKILAAQLYSEFKNFF 217
           +++ P   L  Q+ + FK  F
Sbjct: 320 LMLVPEIALTPQMVNHFKGRF 340


>gi|308198048|ref|XP_001386798.2| RNA helicase required for poly(A+) mRNA export [Scheffersomyces
           stipitis CBS 6054]
 gi|284018078|sp|A3GH91|DBP5_PICST RecName: Full=ATP-dependent RNA helicase DBP5
 gi|149388830|gb|EAZ62775.2| RNA helicase required for poly(A+) mRNA export [Pichia stipitis CBS
           6054]
          Length = 500

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKT 669
           +H  ++T ER  +I D R G+  VL+  N+L  G+DI    +V   D   DK+G     T
Sbjct: 378 LHGGLETSERDRLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDLPTDKDGNADPST 437

Query: 670 SLIQTIGRAAR 680
            L   IGR  R
Sbjct: 438 YL-HRIGRTGR 447


>gi|149238864|ref|XP_001525308.1| hypothetical protein LELG_03236 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013494|sp|A5E0U9|DBP8_LODEL RecName: Full=ATP-dependent RNA helicase DBP8
 gi|146450801|gb|EDK45057.1| hypothetical protein LELG_03236 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 444

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE L   L +   +V  +HSE+   ER   +   + G   +L+  ++   GLDIP   LV
Sbjct: 269 AEVLRRMLRKLEFKVASLHSEMPQTERTNSLHRFKAGAARILIATDVASRGLDIPTVELV 328

Query: 655 AILD--ADKEGFLRSKTSLIQTIGRAAR 680
              D  AD + F       I  +GR AR
Sbjct: 329 VNFDIPADPDDF-------IHRVGRTAR 349


>gi|332020434|gb|EGI60854.1| Putative ATP-dependent RNA helicase DDX52 [Acromyrmex echinatior]
          Length = 558

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           Q+G+   +L+ V +K  A++L   L    I V  +H++    +R   +R  R GK  VL+
Sbjct: 375 QKGISPPVLVFVQSKERAQELFNELIYDGINVDVIHADRTMTQRDNTVRCFREGKIWVLI 434

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+  G+D     LV   D     F  S  S I  IGR  R
Sbjct: 435 CTELMGRGIDFKGVNLVINYD-----FPPSAISYIHRIGRTGR 472


>gi|322368028|ref|ZP_08042597.1| Hef nuclease [Haladaptatus paucihalophilus DX253]
 gi|320552044|gb|EFW93689.1| Hef nuclease [Haladaptatus paucihalophilus DX253]
          Length = 806

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 20/149 (13%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYER---NIRVRYMHSE--------VKTLERIEII 625
           L    G RI++   ++  AE LT++  +     +  R    +        +   E+ E +
Sbjct: 367 LGLNDGERIIVFTESRDTAETLTDFFNDELGSQLTARRFVGQGDKDGSDGMTQKEQQETL 426

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R G+F+VLV  ++  EGLD+PE  LV   +      + +    IQ  GR  R    +
Sbjct: 427 DKFRAGEFEVLVSTSVAEEGLDVPEVDLVLFYEP-----VPTAVRSIQRKGRTGRQAQGQ 481

Query: 686 -VILYADTITKSIQLAIDETTRRREKQLE 713
            V+L A+         I   ++RRE ++E
Sbjct: 482 VVVLLAEDTRDEAYFWI---SKRREDEME 507


>gi|308187815|ref|YP_003931946.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
 gi|308058325|gb|ADO10497.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
          Length = 442

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L  +L+E  IR  Y+  E+   +R E I+ L  G+ +VLV  ++  
Sbjct: 250 RSIVFVRKRERLHELVSWLHEAGIRSSYLEGEMVQAKRNEAIKRLSEGRVNVLVATDIAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+ +   V   D       R+  + +  IGR  R
Sbjct: 310 RGIDVEDVSHVFNYD-----MPRTADTYLHRIGRTGR 341


>gi|301156627|emb|CBW16098.1| ATP-dependent DNA helicase [Haemophilus parainfluenzae T3T1]
          Length = 693

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+ L    +++  +H  +K  E+ +I+   +  + D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLTKAL--PMLKIGLVHGRMKPQEKQDIMAAFKSAELDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           I +A++ G     + L Q  GR  R   +   V++Y   + K  Q
Sbjct: 567 IENAERLGL----SQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQ 607


>gi|291244806|ref|XP_002742284.1| PREDICTED: eukaryotic translation initiation factor 4A-like
           [Saccoglossus kowalevskii]
          Length = 425

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE +  R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 300 TRRKVDWLTEKMQGRDFTVSSLHGDMDQKERDIIMREFRSGSSRVLITTDLLARGIDVQQ 359

Query: 651 CGLV 654
             LV
Sbjct: 360 VSLV 363


>gi|260776195|ref|ZP_05885090.1| transcription-repair coupling factor [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607418|gb|EEX33683.1| transcription-repair coupling factor [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 1153

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 98/232 (42%), Gaps = 31/232 (13%)

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMIVQLKIG 300
           D +   +  I+++I R+    T+     N  I +  ++ +    S   +  Q  + +K+G
Sbjct: 81  DNFSPHQEIISDRIARLYQLPTQ-----NSGITIVPINTLLQRQSPRDFLMQHTLMVKVG 135

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           D    ++L   L K  Y+  D     G +   G  +++FP    D  +R+  F ++I+ I
Sbjct: 136 DLYSLEKLRIQLEKSGYRHVDQVFGPGEYASRGSILDLFPMGASD-PFRIDFFDDEIDTI 194

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
             F P   + I +V+ I++     +    PT  +A++  +   + R           EA+
Sbjct: 195 RTFDPENQRSINDVKEIRLLPAHEF----PTSESAIEDFRIRWRQRF----------EAR 240

Query: 421 RLEQRITYDLEMLETTGSCQS-IENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
           R  + +     M  + G+  + IE +     G        TLF+YI +DS L
Sbjct: 241 REPESVY----MQVSKGTWPAGIEYWQPLFFGHTE-----TLFDYIADDSQL 283


>gi|254497711|ref|ZP_05110485.1| transcription repair coupling factor [Legionella drancourtii
           LLAP12]
 gi|254353058|gb|EET11819.1| transcription repair coupling factor [Legionella drancourtii
           LLAP12]
          Length = 1149

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R+ +DL   + E   +VR  H +++  E   ++ +    +F+VLV   ++  G+DIP  
Sbjct: 826 ERICQDLQTLVPE--AKVRSAHGQMRERELERVMSEFYHHRFNVLVCTTIIETGIDIPTA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             + I  ADK G       L Q  GR  R+ +     YA  +T   +L   +  +R E
Sbjct: 884 NTIIIDRADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPDEKLLTSDAVKRLE 934


>gi|254826134|ref|ZP_05231135.1| primosome assembly protein PriA [Listeria monocytogenes FSL J1-194]
 gi|293595374|gb|EFG03135.1| primosome assembly protein PriA [Listeria monocytogenes FSL J1-194]
          Length = 797

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     ++++  R  + D+L+G  ++ +GLD P
Sbjct: 558 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLKSFRNHEADILLGTQMIAKGLDFP 616

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 617 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 655


>gi|195344854|ref|XP_002038991.1| GM17282 [Drosophila sechellia]
 gi|194134121|gb|EDW55637.1| GM17282 [Drosophila sechellia]
          Length = 822

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 34/149 (22%)

Query: 87  SEKQTREISEQTMTPSVQALARLIQSD-NPLLKNGKIWTPHRSWSINNHSKDITFFQMQT 145
           SEK+  E++E+          R+ + D N  +K G+I  P RSW+ +   K+I     + 
Sbjct: 361 SEKENDEMTERDW--------RIFREDYNVTIKGGRIPNPIRSWNESGFPKEIIDIIDKV 412

Query: 146 DY-HPSGDQPAAIAQLLKGIHSREKVQLLLGV--TGSGKTFT--------------MAKV 188
            Y  P+  Q  AI     G+ +R+    ++GV  TGSGKT                + ++
Sbjct: 413 GYKEPTPIQRQAIPI---GLQNRD----IIGVAETGSGKTLAFLIPLLSWIQSLPKIERL 465

Query: 189 IEAMQRP-AIVMAPNKILAAQLYSEFKNF 216
            +  Q P AI+MAP + LA Q+  E   F
Sbjct: 466 EDVDQGPYAIIMAPTRELAQQIEEETTKF 494


>gi|194752113|ref|XP_001958367.1| GF10884 [Drosophila ananassae]
 gi|190625649|gb|EDV41173.1| GF10884 [Drosophila ananassae]
          Length = 822

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 16/128 (12%)

Query: 567 QVEDVYDE-----------INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           Q+ DV DE            +++A+   + ++ V TK+  +++T  +  +  R   +H +
Sbjct: 372 QIVDVCDENEKLMKLVKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGD 431

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
               ER  ++   R G+  +LV  ++   GLD+ +   V   D     +  +    +  I
Sbjct: 432 KSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYD-----YPSNSEDYVHRI 486

Query: 676 GRAARNVN 683
           GR  R+ N
Sbjct: 487 GRTGRSNN 494


>gi|161870238|ref|YP_001599408.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
 gi|161595791|gb|ABX73451.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
          Length = 462

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|73541054|ref|YP_295574.1| transcription-repair coupling factor [Ralstonia eutropha JMP134]
 gi|72118467|gb|AAZ60730.1| Transcription-repair coupling factor [Ralstonia eutropha JMP134]
          Length = 1150

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/192 (18%), Positives = 78/192 (40%), Gaps = 21/192 (10%)

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSINE 253
           V+  N + A +L  E   F P   V     +    YD + P             +  ++E
Sbjct: 52  VVCANAVDAQRLADEIPWFAPETRVRLLPDWETLPYDSFSPH------------QDLVSE 99

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           ++  +    T     + D ++V + + +Y +      +      K G+ +++  L +   
Sbjct: 100 RLATLHDIQT----GQCDVMLVPASTALYRLAPPSFLAAYTFFFKQGERLDEAALKAQFT 155

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
              Y+     +  G + V G  I+++P     + +R+ +FG++IE I  F P T + +  
Sbjct: 156 LAGYEHVSAVMRPGEYSVRGGLIDLYPMG-SALPYRIDLFGDEIETIRAFDPDTQRSLYP 214

Query: 374 VETIKIYANSHY 385
           V+ +++     +
Sbjct: 215 VKEVRLLPGREF 226


>gi|54026849|ref|YP_121091.1| putative transcription-repair coupling factor [Nocardia farcinica
           IFM 10152]
 gi|54018357|dbj|BAD59727.1| putative transcription-repair coupling factor [Nocardia farcinica
           IFM 10152]
          Length = 1205

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 34/197 (17%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           + ++F  A V  A +RP +V+      A  L  E       ++V  F S+ +    E   
Sbjct: 40  AARSFVAATV--AGKRPVVVVTATGREADDLTVELTEIL-GDSVAQFPSW-ETLPHERLS 95

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI-------VVSSVSCIY-----GIGS 286
           P  DT           + R R +  R L   +D +       VV++V  +      G+G 
Sbjct: 96  PSADT-----------VGR-RLAVLRRLAHPDDPVFPVPLRVVVTTVRSLMQPMAAGLGD 143

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           +E      + L+ G  ++  +LL+ LV+  Y R D+   RG F V G  +++FP    D 
Sbjct: 144 IEP-----IVLREGAELDFDDLLTRLVEFAYTRVDMVGKRGEFAVRGGILDLFPP-TADH 197

Query: 347 AWRVSMFGNDIEEISEF 363
             RV  +G+++ ++  F
Sbjct: 198 PVRVEFWGDEVTQVRAF 214


>gi|16803864|ref|NP_465349.1| primosome assembly protein PriA [Listeria monocytogenes EGD-e]
 gi|224501374|ref|ZP_03669681.1| primosome assembly protein PriA [Listeria monocytogenes FSL R2-561]
 gi|254831574|ref|ZP_05236229.1| primosome assembly protein PriA [Listeria monocytogenes 10403S]
 gi|16411278|emb|CAC99902.1| priA [Listeria monocytogenes EGD-e]
          Length = 797

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     ++++  R  + D+L+G  ++ +GLD P
Sbjct: 558 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLKSFRNHEADILLGTQMIAKGLDFP 616

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 617 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 655


>gi|332881843|ref|ZP_08449486.1| ATP-dependent DNA helicase RecG [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332680187|gb|EGJ53141.1| ATP-dependent DNA helicase RecG [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 698

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT-MAKVIEAMQRP- 195
           TF++    +  +G Q   I ++ + + S R+  +LL G  GSGKT   +  ++ A+    
Sbjct: 259 TFYEKNLPFELTGAQKRVIREIRQDMGSGRQMNRLLQGDVGSGKTLVALMSILIALDNGF 318

Query: 196 -AIVMAPNKILAAQLYSEFKNFF 217
            A +MAP +ILA Q Y  F+N  
Sbjct: 319 QACIMAPTEILAEQHYVTFQNLL 341



 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 91/208 (43%), Gaps = 34/208 (16%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +++  DL EY      ++  +H ++K  E+   ++D   GK  +LV   ++  G+++P  
Sbjct: 505 EQLCRDLPEY------KISRVHGKMKAAEKEAEMQDFISGKTQILVATTVIEVGVNVPNA 558

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
            ++ I +A++ G       L Q  GR  R  +     Y   +TK  QL+ D T +R +  
Sbjct: 559 SVMVIENAERFGL----AQLHQLRGRVGRGADQS---YCILVTK-YQLSAD-TRKRIQIM 609

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI---------DAQQLSLSKKKGKA 762
            E N    I    +K +      P  LE    + +S          D Q L L+++  + 
Sbjct: 610 TETNDGFEIAEADLKLR-----GPGDLEGTQQSGVSFTLRLANLARDGQVLQLARETAE- 663

Query: 763 HLKSLRKQMHLAA--DNLNFEEAARIRD 788
             K L    H AA  +++ + +  ++RD
Sbjct: 664 --KVLDDDPHCAASKNDILWRQLNKLRD 689


>gi|332291666|ref|YP_004430275.1| transcription-repair coupling factor [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169752|gb|AEE19007.1| transcription-repair coupling factor [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 1137

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 14/161 (8%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLT----VLTKRMAEDLTEYLYERNIRVRYMH 613
           P+E    R   E + D +    Q+G ++          K +A  +   + +  + + +  
Sbjct: 744 PIESNVVRFSEEVIRDAVQYEIQRGGQVFFIHNRIENIKEVAGLIQRLVPDAKVGIGHGQ 803

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            E KTLE   +      G+FDVLV   ++  GLD+P    + I +A+  G     + L Q
Sbjct: 804 MEGKTLEAKML--SFMNGEFDVLVSTTIIESGLDVPNANTIFINNANNFGL----SDLHQ 857

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
             GR  R+ N K   Y  T   S   A+ +  R+R + LE 
Sbjct: 858 MRGRVGRS-NKKAFCYFITPPYS---AMTDDARKRIQALEQ 894



 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 82/190 (43%), Gaps = 14/190 (7%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH-NAVEYFVSYYDYYQ 233
           G+ GS  +FT++   E+ + P +++  +K  AA   ++ +      N + Y  SY   YQ
Sbjct: 37  GLVGSALSFTISSAFESAESPFLIILNDKEEAAYFLNDLEQLRKEANVLFYPGSYRRPYQ 96

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
            E      +  I   + +  +I+  R  A          +V    +    + + +   + 
Sbjct: 97  IEEI---DNANILLRAEVLNRINSRRKPA---------LLVTYPDALFEKVVTRKELDRQ 144

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            +++ + D +    +   L + ++KR D     G F V G  +++F S   D  +R+  F
Sbjct: 145 TLKIAVSDQLSLDFVNEMLFEYKFKRVDFVTEPGEFSVRGGIVDVF-SFSHDEPYRIEFF 203

Query: 354 GNDIEEISEF 363
           G++++ I  F
Sbjct: 204 GDEVDSIRTF 213


>gi|327537366|gb|EGF24098.1| ATP-dependent DNA helicase RecG [Rhodopirellula baltica WH47]
          Length = 556

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 29/139 (20%)

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP        T V   Y+++     +GLR+ L  L  RMA D                
Sbjct: 344 LIDPAEPPAEDITSVHSTYEQLRTGPLKGLRVGL--LHGRMASD---------------- 385

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
                 E+ +++     G+ DVLV   ++  G+D+P   ++AIL  ++ G       L Q
Sbjct: 386 ------EKQQVMESFAEGELDVLVSTTVIEVGIDVPNATVMAILGGNRFGL----AQLHQ 435

Query: 674 TIGRAARNVNS-KVILYAD 691
             GR +R  ++  V ++ D
Sbjct: 436 LRGRVSRGTHAGHVCVFVD 454


>gi|325142563|gb|EGC64962.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           961-5945]
 gi|325198512|gb|ADY93968.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           G2136]
          Length = 462

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|322516110|ref|ZP_08069045.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           vestibularis ATCC 49124]
 gi|322125405|gb|EFX96755.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           vestibularis ATCC 49124]
          Length = 447

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   Q    ++ V TK  A+DL  YL    ++V  +H  +   ER  I+  ++  +F+ +
Sbjct: 237 LKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLEFEYI 296

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           V  +L   G+DI     V I DA  +      +  +  +GR  RN
Sbjct: 297 VATDLAARGIDIEGVSHV-INDAIPQDL----SFFVHRVGRTGRN 336


>gi|296417821|ref|XP_002838549.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634492|emb|CAZ82740.1| unnamed protein product [Tuber melanosporum]
          Length = 1490

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 11/105 (10%)

Query: 604 ERNIRVRYMHSEVKTLE-RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           E N R R    E+  L+ + E I D R GK +++V  +++ EG+DIP C LV        
Sbjct: 392 EGNGRTRKAIYELVNLKGQYETIEDFRAGKKNLVVSTSVVEEGMDIPACRLVVCFSLPP- 450

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILY--ADT---ITKSIQLAID 702
               +  S IQ  GRA    ++ V+++   DT   I K  QL +D
Sbjct: 451 ----NLKSFIQRRGRARMAKSNYVLMFNEGDTQGKIDKFKQLEMD 491


>gi|269959135|ref|YP_003328924.1| transcription repair coupling factor [Anaplasma centrale str.
           Israel]
 gi|269848966|gb|ACZ49610.1| transcription repair coupling factor [Anaplasma centrale str.
           Israel]
          Length = 1122

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N++V   H    T    +I+ D   GKF VL+  +++  G+DIP    + + +AD  G  
Sbjct: 817 NVKVEVAHGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPFANTIIVHNADMFGL- 875

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R+
Sbjct: 876 ---AQLYQLKGRVGRS 888


>gi|257455867|ref|ZP_05621086.1| transcription-repair coupling factor [Enhydrobacter aerosaccus
           SK60]
 gi|257446715|gb|EEV21739.1| transcription-repair coupling factor [Enhydrobacter aerosaccus
           SK60]
          Length = 1182

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +RMAE + E + E   RV   H ++K  E  +I++     K +VLV   ++  G+DIP  
Sbjct: 857 ERMAETVRELVPES--RVAVAHGQMKERELEQIMQSFYHKKHNVLVCTTIIETGIDIPNA 914

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 915 NTIIINRADKFGL----AQLHQLRGRVGRS 940


>gi|290893047|ref|ZP_06556036.1| primosome assembly protein PriA [Listeria monocytogenes FSL J2-071]
 gi|290557407|gb|EFD90932.1| primosome assembly protein PriA [Listeria monocytogenes FSL J2-071]
          Length = 797

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     ++++  R  + D+L+G  ++ +GLD P
Sbjct: 558 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLKSFRNHEADILLGTQMIAKGLDFP 616

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 617 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 655


>gi|254805163|ref|YP_003083384.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
 gi|254668705|emb|CBA06474.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
          Length = 462

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|238897336|ref|YP_002923013.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259585614|sp|C4K8M8|RHLB_HAMD5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|229465091|gb|ACQ66865.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 422

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK+  ED+  +L     RV  +  +V   +RI+I+ D   G  D+LV  ++  
Sbjct: 258 RCIIFANTKQRCEDIWGHLVADGHRVGLLTGDVAQRKRIQILDDFSKGYLDILVATDVAA 317

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GL IP+   V   D  +     +    I  IGR  R
Sbjct: 318 RGLHIPKVTHVFNYDLPE-----NVEDYIHRIGRTGR 349


>gi|253731082|ref|ZP_04865247.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|297210100|ref|ZP_06926493.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300910462|ref|ZP_07127914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304379262|ref|ZP_07362001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|253725209|gb|EES93938.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|296885300|gb|EFH24240.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300888304|gb|EFK83495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304342121|gb|EFM08021.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312437505|gb|ADQ76576.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|320140748|gb|EFW32600.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143723|gb|EFW35500.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 517

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++LV  ++   GLDI  
Sbjct: 260 TKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDI-- 317

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 318 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 347


>gi|226326727|ref|ZP_03802245.1| hypothetical protein PROPEN_00585 [Proteus penneri ATCC 35198]
 gi|225204948|gb|EEG87302.1| hypothetical protein PROPEN_00585 [Proteus penneri ATCC 35198]
          Length = 345

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 18/122 (14%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   +D+  +L     RV  +  +V   +R+ I+ D   G  D+LV  ++  
Sbjct: 169 RCIIFANTKHRCDDIWAHLVADGHRVGLLTGDVPQKKRLRILEDFTQGNLDILVATDVAA 228

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            GL IP    V   D   D E +       +  IGR  R  NS           SI LA 
Sbjct: 229 RGLHIPSVTHVFNYDLPDDCEDY-------VHRIGRTGRAGNSG---------NSISLAC 272

Query: 702 DE 703
           +E
Sbjct: 273 EE 274


>gi|196004420|ref|XP_002112077.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
 gi|190585976|gb|EDV26044.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
          Length = 633

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 18/169 (10%)

Query: 523 PTTIVVSATPGSWELEQCQ----------GIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           P T++ SAT   W L+              +I +  +R +  V+  V       +   + 
Sbjct: 233 PQTLLFSATMPKWALKTIDKYMKSDKKIVDLIGKDALRTSTTVEHKVISCPYHERAATIG 292

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLT-EYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           D + +      R ++   TK+ A +L    + ++ ++V  +H +++  +R   ++  R G
Sbjct: 293 DLVKVYGGDHARTIIFSPTKKEANELALSSVLKQEVQV--LHGDIQQAQREVTLKGFREG 350

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            F  LV  ++   GLDIPE  LV   +  K+       + I   GR  R
Sbjct: 351 NFPCLVATDVAARGLDIPEVDLVIQCEPPKDA-----DTYIHRSGRTGR 394


>gi|254933296|ref|ZP_05266655.1| primosome assembly protein PriA [Listeria monocytogenes HPB2262]
 gi|293584856|gb|EFF96888.1| primosome assembly protein PriA [Listeria monocytogenes HPB2262]
 gi|332312265|gb|EGJ25360.1| Primosomal protein N' [Listeria monocytogenes str. Scott A]
          Length = 797

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     ++++  R  + D+L+G  ++ +GLD P
Sbjct: 558 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLKSFRNHEADILLGTQMIAKGLDFP 616

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 617 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 655


>gi|119492913|ref|XP_001263731.1| DEAD/DEAH box RNA helicase, putative [Neosartorya fischeri NRRL
           181]
 gi|119411891|gb|EAW21834.1| DEAD/DEAH box RNA helicase, putative [Neosartorya fischeri NRRL
           181]
          Length = 584

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A    R L+ V TK  A+ L ++LY   +    +HS+    ER + +R  R  +  ++
Sbjct: 388 LLAMPPSRTLIFVNTKTQADFLDDFLYNMGLPSTSIHSDRTQREREDALRSFRSARCPIM 447

Query: 637 VGINLLREGLDIPECGLVAILD---ADKEGFLRSKTSLIQTIGRAAR 680
           V   +   GLDI     V   D   A   G     T  I  IGR AR
Sbjct: 448 VATGVSARGLDIKNVMHVVNFDLPSATHGGI----TEYIHRIGRTAR 490


>gi|116873259|ref|YP_850040.1| primosome assembly protein PriA [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742137|emb|CAK21261.1| primosomal protein N [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 797

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     ++++  R  + D+L+G  ++ +GLD P
Sbjct: 558 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLKSFRNHEADILLGTQMIAKGLDFP 616

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 617 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 655


>gi|55821673|ref|YP_140115.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55823593|ref|YP_142034.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|55737658|gb|AAV61300.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55739578|gb|AAV63219.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 447

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   Q    ++ V TK  A+DL  YL    ++V  +H  +   ER  I+  ++  +F+ +
Sbjct: 237 LKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLEFEYI 296

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           V  +L   G+DI     V I DA  +      +  +  +GR  RN
Sbjct: 297 VATDLAARGIDIEGVSHV-INDAIPQDL----SFFVHRVGRTGRN 336


>gi|82523824|emb|CAI78566.1| hypothetical protein [uncultured candidate division OP8 bacterium]
          Length = 453

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+   TK  A  L E+L  + I+   +H       R E +   + GK+ VLV  ++   G
Sbjct: 244 LVFTRTKHRANRLAEHLVRQGIKAERIHGNRSQGRRTEALAGFKAGKYRVLVATDIAARG 303

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +D+ E G V   D             I  +GR AR
Sbjct: 304 IDVTELGHVVNFDVPL-----VPDDYIHRVGRTAR 333


>gi|119717509|ref|YP_924474.1| ATP-dependent DNA helicase RecG [Nocardioides sp. JS614]
 gi|119538170|gb|ABL82787.1| ATP-dependent DNA helicase RecG [Nocardioides sp. JS614]
          Length = 750

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 6/119 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+ ++ N+ A  G  + L  + +  A+     L    +RV  +H ++   ++  ++R   
Sbjct: 532 DLDEDGNILAPPGASVTLNAVEEVAAQLADGPLA--GLRVERLHGKMAPEDKDAVMRAFA 589

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G  DVLV   ++  G+D+     + +LDAD+ G     + L Q  GR  R  +  + L
Sbjct: 590 AGGVDVLVSTTVIEVGVDVANATAMVLLDADRFGV----SQLHQLRGRVGRGGHPGICL 644


>gi|116628386|ref|YP_821005.1| superfamily II DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116101663|gb|ABJ66809.1| Superfamily II DNA and RNA helicase [Streptococcus thermophilus
           LMD-9]
          Length = 447

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   Q    ++ V TK  A+DL  YL    ++V  +H  +   ER  I+  ++  +F+ +
Sbjct: 237 LKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLEFEYI 296

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           V  +L   G+DI     V I DA  +      +  +  +GR  RN
Sbjct: 297 VATDLAARGIDIEGVSHV-INDAIPQDL----SFFVHRVGRTGRN 336


>gi|332687106|ref|YP_004456880.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
 gi|332371115|dbj|BAK22071.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
          Length = 502

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   L  R  +   +H ++   +R+ ++R  + G  D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRAFKNGDLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|301755322|ref|XP_002913508.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like [Ailuropoda
           melanoleuca]
          Length = 654

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 433 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 550

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 551 ---NITKDL 556


>gi|302851895|ref|XP_002957470.1| hypothetical protein VOLCADRAFT_68157 [Volvox carteri f.
           nagariensis]
 gi|300257274|gb|EFJ41525.1| hypothetical protein VOLCADRAFT_68157 [Volvox carteri f.
           nagariensis]
          Length = 473

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           +D    L  R ++   +H E+  L R  ++ D R G+   LV  ++   GLD+P C  V
Sbjct: 307 QDAQFKLQARGMKAAALHGEMPRLARANLLNDFRRGRLRALVVSDVAARGLDVPSCDAV 365


>gi|297589855|ref|ZP_06948495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|297576983|gb|EFH95697.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
          Length = 517

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++LV  ++   GLDI  
Sbjct: 260 TKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDI-- 317

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 318 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 347


>gi|226224427|ref|YP_002758534.1| primosomal replication factor Y [Listeria monocytogenes Clip81459]
 gi|225876889|emb|CAS05598.1| Putative primosomal replication factor Y [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 797

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     ++++  R  + D+L+G  ++ +GLD P
Sbjct: 558 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLKSFRNHEADILLGTQMIAKGLDFP 616

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 617 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 655


>gi|224124518|ref|XP_002330043.1| predicted protein [Populus trichocarpa]
 gi|222871468|gb|EEF08599.1| predicted protein [Populus trichocarpa]
          Length = 402

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           S RT + D+   + + A+ G  I+ T  TKR A++++  L    I    +H ++   +R 
Sbjct: 38  SKRTILSDL---VTVYAKGGKTIIFTQ-TKRDADEVSMAL-TNTIASEALHGDISQHQRE 92

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             +   R GKF VLV  ++   GLDIP   L
Sbjct: 93  RTLNGFRQGKFTVLVATDVASRGLDIPNVDL 123


>gi|294656897|ref|XP_002770326.1| DEHA2D16896p [Debaryomyces hansenii CBS767]
 gi|218511696|sp|Q6BRF0|MPH1_DEBHA RecName: Full=ATP-dependent DNA helicase MPH1
 gi|199431824|emb|CAR65680.1| DEHA2D16896p [Debaryomyces hansenii]
          Length = 1105

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           ++I+  + G++++LV  ++  EGLDI E  L+   D+       S    IQ +GR  R  
Sbjct: 543 DLIKKFKKGEYNILVATSIGEEGLDIGEVDLIVCYDS-----TSSPIKNIQRMGRTGRKR 597

Query: 683 NSKVIL 688
           + KV+L
Sbjct: 598 DGKVLL 603


>gi|118352386|ref|XP_001009465.1| Type III restriction enzyme, res subunit family protein [Tetrahymena
            thermophila]
 gi|89291232|gb|EAR89220.1| Type III restriction enzyme, res subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 2098

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 10/94 (10%)

Query: 604  ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            E+   +++   + K  E+ +I+   R  +F +LV  +++ EG DIP C +V         
Sbjct: 1332 EKQFSIKFYALKQKYSEQQKIVERFRNKQFKILVSTSVVEEGFDIPSCNIVIAFSK---- 1387

Query: 664  FLRSKTSLIQTIGRAARNVNSK----VILYADTI 693
             + S+   IQ  GR AR  NSK    V +Y + I
Sbjct: 1388 -IISQRQYIQMKGR-ARAENSKFYALVAVYNNVI 1419


>gi|59713567|ref|YP_206342.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59481815|gb|AAW87454.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 634

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 6/131 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++   +R   + +++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 309 LDVPR--ITHVFNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQMRMLRTIERVT 364

Query: 706 RR--REKQLEH 714
           +    E QL H
Sbjct: 365 KSTMEEIQLPH 375


>gi|85709174|ref|ZP_01040240.1| primosomal protein N [Erythrobacter sp. NAP1]
 gi|85690708|gb|EAQ30711.1| primosomal protein N [Erythrobacter sp. NAP1]
          Length = 721

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            +R+A++++E   E  + V    +        E +  +     DV+VG  L+ +G   PE
Sbjct: 486 VERIADEVSELFPEARVAVATSDTLGSPARAAEFLAQVEARAIDVIVGTQLVTKGFHFPE 545

Query: 651 CGLVAILDAD---KEGFLRSK----TSLIQTIGRAARNVNSKVIL 688
             LV ++DAD   + G LR+       + Q  GRA R      +L
Sbjct: 546 LTLVGVVDADLGLEGGDLRAAERTYQQVAQVAGRAGRGAKPGEVL 590



 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 7/100 (7%)

Query: 135 SKDITFFQMQTDYHP---SGDQPAAIAQLLKGIHSREKVQLLL-GVTGSGKTFT-MAKVI 189
           S D  + +   D+H    S DQ     QL+K + +R+    LL GVTGSGKT T    V 
Sbjct: 172 SIDRPYDRADADHHQPALSDDQMRVAKQLVKAVEARKFEPFLLDGVTGSGKTETYFEPVA 231

Query: 190 EA--MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           EA  M R  +V+ P   L     + F++ F    V++  S
Sbjct: 232 EALRMGRQVLVLLPEIALTENFLTRFEDRFGAAPVQWHSS 271


>gi|312279014|gb|ADQ63671.1| Peptide chain release factor 2 [Streptococcus thermophilus ND03]
          Length = 447

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   Q    ++ V TK  A+DL  YL    ++V  +H  +   ER  I+  ++  +F+ +
Sbjct: 237 LKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLEFEYI 296

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           V  +L   G+DI     V I DA  +      +  +  +GR  RN
Sbjct: 297 VATDLAARGIDIEGVSHV-INDAIPQDL----SFFVHRVGRTGRN 336


>gi|312131382|ref|YP_003998722.1| primosomal protein n' [Leadbetterella byssophila DSM 17132]
 gi|311907928|gb|ADQ18369.1| primosomal protein N' [Leadbetterella byssophila DSM 17132]
          Length = 821

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGLD 647
           V T+R+ +DL E   E  + +R      +T    E II +   G+ D+LVG  ++ +GLD
Sbjct: 579 VGTERIEDDLREIFPEAGV-LRMDLDTTRTKNAYENIIGEFETGEVDILVGTQMVTKGLD 637

Query: 648 IPECGLVAILDADK-------EGFLRSKTSLIQTIGRAARNVNSKVIL 688
                LV + +ADK           R+   + Q  GRA R     ++L
Sbjct: 638 FDRVNLVGVFNADKLINFPDFRSGERAFQLITQVSGRAGRREEKGIVL 685


>gi|301067528|ref|YP_003789551.1| transcription-repair coupling factor (superfamily II helicase)
           [Lactobacillus casei str. Zhang]
 gi|300439935|gb|ADK19701.1| Transcription-repair coupling factor (superfamily II helicase)
           [Lactobacillus casei str. Zhang]
          Length = 1174

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/232 (18%), Positives = 98/232 (42%), Gaps = 13/232 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
            L+ G++GS KT     +++   +  +++  N+  A +L ++  +    +AV Y     D
Sbjct: 25  HLVTGLSGSAKTVFFGALLQQRPQQILIVENNRFHADELAADLSSLL-GDAVVYDFPVED 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
               E  V   +T        N++I+ +    +     +   IV S       + S   +
Sbjct: 84  VLAAEVAVSSPETR-------NDRINALTFIQSG----KPGIIVTSLAGYKRLLPSPADW 132

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +   + + +   ++ + +   LV   Y+R  +    G F + G  I+++P + +D   R+
Sbjct: 133 AASELAIDMTSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDVYPLNQDD-PIRI 191

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            +F  +I+ I  F   T + ++ ++ I I   +  V     L  A + I ++
Sbjct: 192 ELFDTEIDSIRSFDIATQRSLQKLQQITIAPATDMVATDQVLAAAGERITKQ 243



 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y H ++   +   +I D   G +DVLV   ++  G+D+P    + I +AD  G     
Sbjct: 856 VGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGL---- 911

Query: 669 TSLIQTIGRAARN 681
           + L Q  GR  R+
Sbjct: 912 SQLYQLRGRIGRS 924


>gi|302661145|ref|XP_003022243.1| hypothetical protein TRV_03646 [Trichophyton verrucosum HKI 0517]
 gi|291186180|gb|EFE41625.1| hypothetical protein TRV_03646 [Trichophyton verrucosum HKI 0517]
          Length = 1177

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++EII+  + G ++ +V  ++  EGLDI E  L+   D+       S   ++Q +GR  
Sbjct: 769 KQLEIIKKFKEGTYNTIVATSIGEEGLDIGEVDLIICYDSSA-----SPIRMLQRMGRTG 823

Query: 680 RNVNSKVIL 688
           R    KV+L
Sbjct: 824 RKRMGKVVL 832


>gi|242067108|ref|XP_002454843.1| hypothetical protein SORBIDRAFT_04g038330 [Sorghum bicolor]
 gi|241934674|gb|EES07819.1| hypothetical protein SORBIDRAFT_04g038330 [Sorghum bicolor]
          Length = 407

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R
Sbjct: 266 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQQERDAIMGEFR 320

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 321 SGDTRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 366


>gi|294901517|ref|XP_002777393.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239885024|gb|EER09209.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 515

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G +I++   TKR A+DLT  L         +H + K  ER  ++++ + GK  +++  ++
Sbjct: 347 GSKIVIFTDTKRAADDLTRMLRMDGWPALSIHGDKKQEERDWVLQEFKSGKSPIMIATDV 406

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
              GLD+ +  L  +++ D  G +      I   GRA 
Sbjct: 407 ASRGLDVKD--LRHVINYDFPGQIEDYVHRIGRTGRAG 442


>gi|238836384|gb|ACR61400.1| vasa [Ctenopharyngodon idella]
          Length = 670

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  I    +H + +  ER + + D R G+  VLV  ++  
Sbjct: 487 RTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRTGQCPVLVATSVAA 546

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDI     V   D        +    +  IGR  R  N
Sbjct: 547 RGLDIEHVQHVVNFD-----LPNNIDEYVHRIGRTGRCGN 581


>gi|223462261|gb|AAI50863.1| Ddx3x protein [Mus musculus]
          Length = 661

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 433 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 550

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 551 ---NITKDL 556


>gi|195542171|gb|ACF98296.1| eIF-4A [Pennisetum glaucum]
          Length = 407

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R
Sbjct: 266 DLYDTLTIT-----QAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQQERDAIMTEFR 320

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 321 SGATRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 366


>gi|197287125|ref|YP_002152997.1| ATP-dependent RNA helicase RhlB [Proteus mirabilis HI4320]
 gi|227357184|ref|ZP_03841553.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|226739541|sp|B4F1V3|RHLB_PROMH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|194684612|emb|CAR46501.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320]
 gi|227162716|gb|EEI47683.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 432

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   +D+  +L     RV  +  +V   +R+ I+ D   G  D+LV  ++  
Sbjct: 258 RCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVPQKKRLRILEDFTQGNIDILVATDVAA 317

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GL IP   +  + + D           I   GRA ++ NS
Sbjct: 318 RGLHIPS--VTHVFNYDLPDDCEDYVHRIGRTGRAGKSGNS 356


>gi|229917516|ref|YP_002886162.1| type III restriction protein res subunit [Exiguobacterium sp. AT1b]
 gi|229468945|gb|ACQ70717.1| type III restriction protein res subunit [Exiguobacterium sp. AT1b]
          Length = 959

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 22/194 (11%)

Query: 567 QVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           +VE + ++I      G  LR L+   +K+ A  L+E L  R  +   +  +    +R + 
Sbjct: 432 RVERIIEKIKYYGYSGEKLRGLMFCSSKKEAIYLSEQLNARGFKTCALTGDDTQAKRKQE 491

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + +L  G  D ++ +++  EG+DIP    V +L   +   +      IQ +GR  R   S
Sbjct: 492 VNNLEQGLLDYILTVDIFNEGIDIPSINQVVMLRQTESSII-----FIQQLGRGLRKHKS 546

Query: 685 K--------VILYADTITKSIQLAIDETTRR---REKQLEH---NKKHNINPQSV-KEKI 729
           K        +  Y +     I L+ D +  +   R K ++    +    IN ++V KE+I
Sbjct: 547 KRYVTVIDFIANYKNNYLIPIALSGDRSQNKDSIRRKVIDRSYISGTSTINFEAVAKERI 606

Query: 730 MEVIDPILLEDAAT 743
            E I+   L D  T
Sbjct: 607 YESINQARLTDLKT 620


>gi|254829181|ref|ZP_05233868.1| primosome assembly protein PriA [Listeria monocytogenes FSL N3-165]
 gi|284802270|ref|YP_003414135.1| primosome assembly protein PriA [Listeria monocytogenes 08-5578]
 gi|284995412|ref|YP_003417180.1| primosome assembly protein PriA [Listeria monocytogenes 08-5923]
 gi|258601591|gb|EEW14916.1| primosome assembly protein PriA [Listeria monocytogenes FSL N3-165]
 gi|284057832|gb|ADB68773.1| primosome assembly protein PriA [Listeria monocytogenes 08-5578]
 gi|284060879|gb|ADB71818.1| primosome assembly protein PriA [Listeria monocytogenes 08-5923]
          Length = 797

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     ++++  R  + D+L+G  ++ +GLD P
Sbjct: 558 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLKSFRNHEADILLGTQMIAKGLDFP 616

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 617 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 655


>gi|24584994|ref|NP_609888.2| CG10333 [Drosophila melanogaster]
 gi|22946759|gb|AAF53680.2| CG10333 [Drosophila melanogaster]
 gi|60677727|gb|AAX33370.1| RH55640p [Drosophila melanogaster]
          Length = 822

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 34/149 (22%)

Query: 87  SEKQTREISEQTMTPSVQALARLIQSD-NPLLKNGKIWTPHRSWSINNHSKDITFFQMQT 145
           SEK+  E++E+          R+ + D N  +K G+I  P RSW+ +   K+I     + 
Sbjct: 361 SEKENDEMTERDW--------RIFREDYNVTIKGGRIPNPIRSWNESGFPKEIIDIIDKV 412

Query: 146 DY-HPSGDQPAAIAQLLKGIHSREKVQLLLGV--TGSGKTFT--------------MAKV 188
            Y  P+  Q  AI     G+ +R+    ++GV  TGSGKT                + ++
Sbjct: 413 GYKEPTPIQRQAIPI---GLQNRD----IIGVAETGSGKTLAFLIPLLSWIQSLPKIERL 465

Query: 189 IEAMQRP-AIVMAPNKILAAQLYSEFKNF 216
            +  Q P AI+MAP + LA Q+  E   F
Sbjct: 466 EDVDQGPYAIIMAPTRELAQQIEEETTKF 494


>gi|66357412|ref|XP_625884.1| Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc)
           [Cryptosporidium parvum Iowa II]
 gi|46226846|gb|EAK87812.1| Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc)
           [Cryptosporidium parvum Iowa II]
 gi|323510023|dbj|BAJ77905.1| cgd4_3000 [Cryptosporidium parvum]
          Length = 702

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +GL ++  V  KR A+ + ++L ++N     +H +    ER   +R  R G+  +L
Sbjct: 455 LEQGEGLTVVF-VEMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALRLFRSGQRPIL 513

Query: 637 VGINLLREGLDIPECGLVAILD 658
           V  ++   GLDIP    V  LD
Sbjct: 514 VATDVAARGLDIPNITHVINLD 535


>gi|326803014|ref|YP_004320832.1| transcription-repair coupling factor [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650035|gb|AEA00218.1| transcription-repair coupling factor [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 1183

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 8/101 (7%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H ++   +  E++ D   G  DVLV   ++  G+D+P    + + DAD+ G    
Sbjct: 862 RVAIAHGQMHANQLEEVLMDFLAGDDDVLVTTTIIETGIDMPNVNTLLVEDADRMGL--- 918

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
            ++L Q  GR  R   S  + YA  + +  + A++E + +R
Sbjct: 919 -STLYQLRGRVGR---SNRVAYAYFMYRPDK-ALNEASEKR 954


>gi|307352953|ref|YP_003894004.1| helicase domain-containing protein [Methanoplanus petrolearius DSM
           11571]
 gi|307156186|gb|ADN35566.1| helicase domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 766

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 19/131 (14%)

Query: 598 LTEYLYERNIRVRYMHSEV-----KTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           L EYL  R I  +    +      K L   ++IE +   R G+F VL+  ++  EGLD+P
Sbjct: 386 LDEYLKGRGIDCKKFIGQASRDSEKGLSQKKQIETLTGFRNGEFRVLIATSVGEEGLDVP 445

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
              LV   +A     + S+   IQ  GR  R+ +  +I+    +TK      DET R   
Sbjct: 446 STDLVIFYEA-----VPSEIRSIQRKGRTGRHGSGSIIVL---VTKGTS---DETFRYVS 494

Query: 710 KQLEHNKKHNI 720
           +  E   K  I
Sbjct: 495 QNREKTMKKGI 505


>gi|306820708|ref|ZP_07454336.1| conserved hypothetical protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551318|gb|EFM39281.1| conserved hypothetical protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 454

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 65/353 (18%), Positives = 140/353 (39%), Gaps = 45/353 (12%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            +Q+   I ++    L+ G++     F +  + +   +  + + P+ I +  +Y E K  
Sbjct: 14  FSQINNAISNKNTPLLINGISTDATAFLINYIHKTQGKNVVFITPSDISSQDIYKELKK- 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTY-IEKESSINEQIDRMRHSATRSLLERN-DCIV 274
                          Y  +  + ++D     +  + N Q +  R    R + E + D ++
Sbjct: 73  ---------------YSEKVLILQSDELKFYQIDATNRQNEFSRIRVLRKVYENDYDFLI 117

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR--QDIGIIRGTFRVC 332
           ++  SC+      + Y +  + + +    + KEL   L+   Y+R  +  GI  G F + 
Sbjct: 118 LTLSSCMRRYMPKKYYDENFIDISLSSKFDLKELSEVLITLGYERVKKVEGI--GQFSLR 175

Query: 333 GDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
           G  +++F P +   V  R+  F ++++ I  F   T      ++ ++I     Y+ P   
Sbjct: 176 GFILDVFTPDNSSPV--RIEFFDDEVDSIRIFDLYTQISTTKIKNVRIIHAREYLYP--- 230

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                K +KE  +    ++ K+            I YD+E ++     + +E Y  +L  
Sbjct: 231 -----KNVKEIAETLFKQITKDAN--------DDIRYDIEKIQNNSYFKGLEKYINFLY- 276

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
             P E   ++F+ I +D  L   E +    +   ++   +    T  + GF L
Sbjct: 277 --PDE-DTSIFDIISKDINLVFSEPNRFFEKSDNIFYEFYENYKTAFKRGFAL 326


>gi|302412697|ref|XP_003004181.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261356757|gb|EEY19185.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 1240

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           +R + M    +     E +   R G  ++L+  ++L EG+D+P C LV   D  +     
Sbjct: 269 VRKKDMWDLSRAAHETEPLLQFRSGHLNLLIATSVLEEGIDVPACNLVICFDEPE----- 323

Query: 667 SKTSLIQTIGRAARNVNSKVILYADT 692
           +  + +Q  GRA +  +S V+L   T
Sbjct: 324 NLKAFVQRRGRARKKDSSLVVLLPGT 349


>gi|241766968|ref|ZP_04764765.1| ATP-dependent DNA helicase RecG [Acidovorax delafieldii 2AN]
 gi|241362544|gb|EER58432.1| ATP-dependent DNA helicase RecG [Acidovorax delafieldii 2AN]
          Length = 768

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 8/96 (8%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DL+E L      V  +HS + T E+  ++     G+  VLV   ++  G+D+P   L+ I
Sbjct: 581 DLSEALP--GCMVGLLHSRMPTAEKKAVMALFTSGQMGVLVSTTVIEVGVDVPNASLMVI 638

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYA 690
             A++ G     + L Q  GR  R   +   V+LYA
Sbjct: 639 EHAERFGL----SQLHQLRGRVGRGAAASACVLLYA 670


>gi|294901515|ref|XP_002777392.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239885023|gb|EER09208.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 531

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G +I++   TKR A+DLT  L         +H + K  ER  ++++ + GK  +++  ++
Sbjct: 363 GSKIVIFTDTKRAADDLTRMLRMDGWPALSIHGDKKQEERDWVLQEFKSGKSPIMIATDV 422

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
              GLD+ +  L  +++ D  G +      I   GRA 
Sbjct: 423 ASRGLDVKD--LRHVINYDFPGQIEDYVHRIGRTGRAG 458


>gi|294894930|ref|XP_002775023.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239880806|gb|EER06839.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 647

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 2/108 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+   TKR A+D+T  L         +H + K  ER  ++ + + G+  +++  ++  
Sbjct: 452 KALIFTDTKRCADDITRVLRRDGWPALSIHGDKKQSERDWVLAEFKSGRMPIMIATDVAS 511

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
            GLD+ +   V  ++ D  G +      I   GRA  +  +     AD
Sbjct: 512 RGLDVKDVKYV--INYDFPGTIEDYVHRIGRTGRAGAHGTAYSFFTAD 557


>gi|284992417|ref|YP_003410971.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284065662|gb|ADB76600.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
           DSM 43160]
          Length = 726

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  +   ++   +R    G  DVLV   ++  G+D+P   ++ +LDAD+ G  
Sbjct: 542 GLRLEVLHGRMTPEDKEARMRAFAAGDVDVLVATTVVEVGVDVPNATVMVVLDADRFGV- 600

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKS 696
              + L Q  GR AR  +  + L     + S
Sbjct: 601 ---SQLHQLRGRVARGRHQGLCLLVSEASAS 628


>gi|332140113|ref|YP_004425851.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550135|gb|AEA96853.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 589

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK    +L + L  R   V  ++ ++    R   +  L+ GK D+LV  +++  
Sbjct: 249 MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDILVATDVVAR 308

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  ++  IL+     K +  +I+
Sbjct: 309 GLDVERVSHVINYDIPYDSESYVHR----IGRTGRAGRQGDA--ILFISHREKRLLFSIE 362

Query: 703 ETTRR 707
           +TT++
Sbjct: 363 KTTKQ 367


>gi|229918086|ref|YP_002886732.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
 gi|229469515|gb|ACQ71287.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
          Length = 509

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++TE L +R      +H ++   +R ++IR  + G  D+LV  ++   GLDI  
Sbjct: 249 TKKRVDEVTEALIKRGYTADGLHGDLTQSKRDQVIRRFKNGTIDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 307 SGVTHVYNFD---VPQDPESYVHRIGRTGR 333


>gi|169795894|ref|YP_001713687.1| putative bifunctional restriction enzyme/helicase [Acinetobacter
           baumannii AYE]
 gi|213157410|ref|YP_002319455.1| type III restriction enzyme, res subunit [Acinetobacter baumannii
           AB0057]
 gi|215483381|ref|YP_002325594.1| Type III restriction enzyme, res subunit [Acinetobacter baumannii
           AB307-0294]
 gi|332854428|ref|ZP_08435360.1| helicase protein [Acinetobacter baumannii 6013150]
 gi|332868465|ref|ZP_08438177.1| helicase protein [Acinetobacter baumannii 6013113]
 gi|169148821|emb|CAM86690.1| conserved hypothetical protein; putative bifunctional protein
           [Includes :putative Restriction enzyme; putative
           helicase] [Acinetobacter baumannii AYE]
 gi|213056570|gb|ACJ41472.1| type III restriction enzyme, res subunit [Acinetobacter baumannii
           AB0057]
 gi|213987326|gb|ACJ57625.1| Type III restriction enzyme, res subunit [Acinetobacter baumannii
           AB307-0294]
 gi|332728004|gb|EGJ59396.1| helicase protein [Acinetobacter baumannii 6013150]
 gi|332733352|gb|EGJ64539.1| helicase protein [Acinetobacter baumannii 6013113]
          Length = 998

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 15/116 (12%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R  +E+ +D I +A    +        KR  E    Y  E++++   + S  KT  + E+
Sbjct: 274 REDLENGFDHIVMARASSM--------KRAKEIFNIYSKEKDLKPVLIDS--KTKNKTEV 323

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++ +R  +  ++V +N+L EG D+P+  + AI D  K     S   ++Q  GR  R
Sbjct: 324 LKAIRNREHKIIVCVNMLGEGFDLPQLKISAIHDPHK-----SINVMLQFTGRFTR 374


>gi|189082208|sp|A6ZVS0|MPH1_YEAS7 RecName: Full=ATP-dependent DNA helicase MPH1; AltName:
           Full=Mutator phenotype protein 1
 gi|151943160|gb|EDN61495.1| DEAH family protein [Saccharomyces cerevisiae YJM789]
          Length = 993

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+I + + G+++VLV  ++  EGLDI E  L+   D        S    IQ +GR  R  
Sbjct: 558 EVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDT-----TSSPIKNIQRMGRTGRKR 612

Query: 683 NSKVIL 688
           + K++L
Sbjct: 613 DGKIVL 618


>gi|162312291|ref|XP_001713145.1| mitochondrial ATP-dependent DNA helicase Irc3 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|212277742|sp|Q1MTR1|IRC3_SCHPO RecName: Full=Putative mitochondrial ATP-dependent helicase irc3
 gi|157310454|emb|CAA20693.2| mitochondrial ATP-dependent DNA helicase Irc3 (predicted)
           [Schizosaccharomyces pombe]
          Length = 606

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 33/169 (19%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLVAILDADKEGF 664
           I  R +  E    ER  +I+D R  KF VLV   +L EG DIP  +C ++A   +     
Sbjct: 290 IDARALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLMIARPTS----- 344

Query: 665 LRSKTSLIQTIGRAARNVNSK----VILYADTITKSIQLAIDETTRR---REKQLEHNKK 717
             S   L Q IGR  R    K    ++ + D++ + + L +D T       E +  +NK 
Sbjct: 345 --SPNLLTQMIGRGLRLHEGKRDCLILDFCDSL-RRVSLHVDPTLAGLSPDEVENFYNKS 401

Query: 718 HN--INP---------QSV-----KEKIMEVIDPILLEDAATTNISIDA 750
            N   NP         QSV       K++E++D I  +D +  N+S +A
Sbjct: 402 KNSLANPDYDPKIYGLQSVLWYSKLRKLIEMMDNIKNKDRSIFNLSTNA 450


>gi|91772921|ref|YP_565613.1| Hef nuclease [Methanococcoides burtonii DSM 6242]
 gi|91711936|gb|ABE51863.1| Hef helicase [Methanococcoides burtonii DSM 6242]
          Length = 769

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++EII   + G+++VLV  ++  EGLDIP   LV   +      + S+   IQ  GR  
Sbjct: 425 QQVEIIEKFKAGEYNVLVATSVAEEGLDIPATDLVVFYEP-----VPSEIRSIQRKGRTG 479

Query: 680 RNVNSKVIL 688
           R    +V++
Sbjct: 480 RKHEGRVVV 488


>gi|56416451|ref|YP_153525.1| transcription repair coupling factor [Anaplasma marginale str. St.
           Maries]
 gi|56387683|gb|AAV86270.1| transcription repair coupling factor [Anaplasma marginale str. St.
           Maries]
          Length = 1152

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N++V   H    T    +I+ D   GKF VL+  +++  G+DIP    + + +AD  G  
Sbjct: 847 NVKVEVAHGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPFANTIIVHNADMFGL- 905

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R+
Sbjct: 906 ---AQLYQLKGRVGRS 918


>gi|57113867|ref|NP_001008986.1| ATP-dependent RNA helicase DDX3Y [Pan troglodytes]
 gi|51315848|sp|Q6GVM6|DDX3Y_PANTR RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|48728366|gb|AAT46349.1| DDX3Y [Pan troglodytes]
          Length = 660

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +LV   +   G
Sbjct: 443 LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 502

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           LDI     V   D  +D E ++    +T  +  +G A    N K I     ITK +
Sbjct: 503 LDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNI----NITKDL 554


>gi|185134419|ref|NP_001117665.1| Vasa [Oncorhynchus mykiss]
 gi|6521014|dbj|BAA88059.1| Vasa [Oncorhynchus mykiss]
          Length = 647

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 73/184 (39%), Gaps = 14/184 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L    +    +H + +  ER + + D R G+  VLV  ++  
Sbjct: 465 RTMVFVETKRQADFIATFLCREKVNTTSIHGDREQREREQALGDFRSGRCPVLVATSVAA 524

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAID 702
            GLDI +   +   D        +    +  IGR  R  N+ + + + D          D
Sbjct: 525 RGLDIKDVQHIVNFD-----LPNNIDEYVHRIGRTGRCGNTGRAVCFFDP-------GAD 572

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKA 762
               R   ++    +  + P+ ++E                T  S D+++    ++ G +
Sbjct: 573 GNLARSLVKVLSGAQQEV-PKWLEEAAFSAHGTTGFNPGGRTFASTDSRKGGSLQRDGAS 631

Query: 763 HLKS 766
           HL +
Sbjct: 632 HLAA 635


>gi|89098707|ref|ZP_01171589.1| primosome assembly protein PriA [Bacillus sp. NRRL B-14911]
 gi|89086669|gb|EAR65788.1| primosome assembly protein PriA [Bacillus sp. NRRL B-14911]
          Length = 802

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 152 DQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAA 207
           +Q AAI  +L  I+  E  V LL GVTGSGKT    + I+ +    R AIV+ P   L  
Sbjct: 269 EQDAAIRPILSSINETEHHVFLLYGVTGSGKTEVYLQSIQRVLEQGREAIVLVPEISLTP 328

Query: 208 QLYSEFKNFF 217
           Q+ + FK  F
Sbjct: 329 QMVTRFKGRF 338



 Score = 37.7 bits (86), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 15/102 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+++ E+L + L E     R +  +V T  R      ++ + + G  D+L+G  ++ +GL
Sbjct: 563 TQKVEEELGKILPE----ARVVRMDVDTTSRKGSHERLLNEFQEGHADILLGTQMIAKGL 618

Query: 647 DIPECGLVAILDADK----EGFLRSKTS---LIQTIGRAARN 681
           D P   LV +L AD       F  S+ +   L Q  GRA R+
Sbjct: 619 DFPNITLVGVLSADTMLHLPDFRASEKTFQLLTQVSGRAGRH 660


>gi|297566385|ref|YP_003685357.1| transcription factor CarD [Meiothermus silvanus DSM 9946]
 gi|296850834|gb|ADH63849.1| transcription factor CarD [Meiothermus silvanus DSM 9946]
          Length = 988

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+  +H ++   +  E++     G FDVL+   ++  GLDIPE   + I  AD+ G    
Sbjct: 691 RIGVVHGQMPEGDIEEVMLAFAEGAFDVLLATTIIESGLDIPEANTIVIERADRLGL--- 747

Query: 668 KTSLIQTIGRAAR 680
             +L Q  GR  R
Sbjct: 748 -AALYQLRGRVGR 759


>gi|121635074|ref|YP_975319.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
 gi|120866780|emb|CAM10533.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
 gi|325132439|gb|EGC55132.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M6190]
 gi|325134396|gb|EGC57041.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M13399]
 gi|325138213|gb|EGC60782.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           ES14902]
 gi|325144497|gb|EGC66796.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240013]
 gi|325205865|gb|ADZ01318.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M04-240196]
          Length = 462

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|114570037|ref|YP_756717.1| ATP-dependent DNA helicase RecG [Maricaulis maris MCS10]
 gi|114340499|gb|ABI65779.1| ATP-dependent DNA helicase RecG [Maricaulis maris MCS10]
          Length = 694

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 20/183 (10%)

Query: 522 RPTTIVVSATP--GSWELEQCQGIIVEQII-RPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           RP T+V++ATP   +  L     + V ++  +P G + P   + S   ++++V + +  A
Sbjct: 413 RPDTLVMTATPIPRTLSLAVYGDLDVSRLDEKPAGRIPPDTRLVSME-RLDEVVEGVRRA 471

Query: 579 AQQGLRILLT---VLTKRM-----AEDLTEYLYE--RNIRVRYMHSEVKTLERIEIIRDL 628
             +G R+      V    M     AED   +L     + RV  +H  +K  E+ +I    
Sbjct: 472 IGRGDRVYWVCPLVEESEMSELSAAEDRWRHLRAVLGDDRVGLLHGRMKPAEKEDIATRF 531

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKV 686
           R G+ DVLV   ++  G+D P+  ++ I  A++ G       L Q  GR  R    +S +
Sbjct: 532 RAGEMDVLVATTVIEVGVDAPDATVMIIEHAERFGL----AQLHQLRGRVGRGDKPSSCL 587

Query: 687 ILY 689
           +LY
Sbjct: 588 LLY 590


>gi|109079956|ref|XP_001092587.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform 3
           [Macaca mulatta]
          Length = 622

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDHEERTKAIEAFREGKKDVLVATDVASK 494

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 495 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 543

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    +  + P
Sbjct: 544 VLMDLKALLLEARQKVPP 561


>gi|56694884|ref|YP_164394.1| DEAD box family helicase [Bacillus phage BCJA1c]
 gi|52631311|gb|AAU85063.1| DEAD box family helicase [Bacillus phage BCJA1c]
          Length = 526

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 8/113 (7%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +E + DE+   A+    ++   L K  ++  TE L ++  +   ++ + K  +R EI+ D
Sbjct: 218 LESIADEMAKVAKDRKTVVFLPLVK-TSQKFTELLNKKGFKAAEVNGDSK--DRAEILED 274

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
               K++VL    LL EG D P    V +L   K   +RS  S  Q +GR  R
Sbjct: 275 FDNDKYNVLCNSMLLTEGWDCPSVDCVVVLRPTK---VRSLYS--QMVGRGTR 322


>gi|50842805|ref|YP_056032.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
           KPA171202]
 gi|50840407|gb|AAT83074.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
           KPA171202]
 gi|314923604|gb|EFS87435.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1]
 gi|314966442|gb|EFT10541.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
 gi|315092781|gb|EFT64757.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
 gi|315103751|gb|EFT75727.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
 gi|315105899|gb|EFT77875.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
 gi|327327264|gb|EGE69040.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL103PA1]
          Length = 561

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 63/126 (50%), Gaps = 8/126 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G   +LV  ++  
Sbjct: 305 KVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGDATILVATDVAA 364

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVILYADT-----ITKSI 697
            G+D+   G+  +++ +     ++    I   GRA A+ V   ++ +AD      I K++
Sbjct: 365 RGIDV--TGVSHVINHECPEDEKTYVHRIGRTGRAGAKGVAVTLVDWADVTRWKLINKAL 422

Query: 698 QLAIDE 703
            L + E
Sbjct: 423 NLELSE 428


>gi|72161050|ref|YP_288707.1| ATP-dependent DNA helicase RecG [Thermobifida fusca YX]
 gi|71914782|gb|AAZ54684.1| ATP-dependent DNA helicase RecG [Thermobifida fusca YX]
          Length = 733

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  +   E+ +++R    G+ DVLV   ++  G+++P   ++ I+DAD+ G  
Sbjct: 547 GLRLAALHGRLAPDEKDKVMRAFAAGEIDVLVATTVVEVGVNVPNATVMMIMDADRFGV- 605

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R 
Sbjct: 606 ---SQLHQLRGRVGRG 618


>gi|47093061|ref|ZP_00230839.1| primosomal protein N` [Listeria monocytogenes str. 4b H7858]
 gi|47018562|gb|EAL09317.1| primosomal protein N` [Listeria monocytogenes str. 4b H7858]
          Length = 797

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     ++++  R  + D+L+G  ++ +GLD P
Sbjct: 558 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLKSFRNHEADILLGTQMIAKGLDFP 616

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 617 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 655


>gi|323333071|gb|EGA74472.1| Mph1p [Saccharomyces cerevisiae AWRI796]
          Length = 957

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+I + + G+++VLV  ++  EGLDI E  L+   D        S    IQ +GR  R  
Sbjct: 558 EVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDT-----TSSPIKNIQRMGRTGRKR 612

Query: 683 NSKVIL 688
           + K++L
Sbjct: 613 DGKIVL 618


>gi|301348104|ref|ZP_07228845.1| Type III restriction enzyme, res subunit [Acinetobacter baumannii
           AB056]
          Length = 940

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 15/116 (12%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R  +E+ +D I +A    +        KR  E    Y  E++++   + S  KT  + E+
Sbjct: 216 REDLENGFDHIVMARASSM--------KRAKEIFNIYSKEKDLKPVLIDS--KTKNKTEV 265

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++ +R  +  ++V +N+L EG D+P+  + AI D  K     S   ++Q  GR  R
Sbjct: 266 LKAIRNREHKIIVCVNMLGEGFDLPQLKISAIHDPHK-----SINVMLQFTGRFTR 316


>gi|289724644|gb|ADD18300.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 652

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/108 (20%), Positives = 51/108 (47%), Gaps = 5/108 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +++++  + ++ V TK+  +++T  +  +  R   +H +    ER  ++   R G+  +L
Sbjct: 360 ISSEKDTKTIIFVETKKRVDEITRSISRQGWRACAIHGDKSQQERDYVLTSFRNGRSSIL 419

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           V  ++   GLD+ +   V   D     +  +    +  IGR  R+ N+
Sbjct: 420 VATDVAARGLDVDDVKFVINYD-----YPSNSEDYVHRIGRTGRSNNT 462


>gi|255093167|ref|ZP_05322645.1| ATP-dependent RNA helicase [Clostridium difficile CIP 107932]
 gi|255314909|ref|ZP_05356492.1| ATP-dependent RNA helicase [Clostridium difficile QCD-76w55]
 gi|255517583|ref|ZP_05385259.1| ATP-dependent RNA helicase [Clostridium difficile QCD-97b34]
 gi|260683781|ref|YP_003215066.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260209944|emb|CBA63924.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
          Length = 497

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 9/102 (8%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK     L   + +    +R +H+++    RI +I+D +  KF++LV  ++   
Sbjct: 248 VIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILVSSDVASR 307

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNS 684
           G+ I +  LV   D   DKE +       I  IGR  R  NS
Sbjct: 308 GIHIDDISLVINYDVPQDKENY-------IHRIGRTGRKGNS 342


>gi|182417252|ref|ZP_02948605.1| ATP-dependent DNA helicase RecG [Clostridium butyricum 5521]
 gi|237667623|ref|ZP_04527607.1| ATP-dependent DNA helicase RecG [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182378898|gb|EDT76411.1| ATP-dependent DNA helicase RecG [Clostridium butyricum 5521]
 gi|237655971|gb|EEP53527.1| ATP-dependent DNA helicase RecG [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 677

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 15/121 (12%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDL--TEYLYER-------NIRVRYMHSEVKTL 619
           E  YDEI    Q  + I+  ++ +   E L   E LYE+       N+RV  +H ++K  
Sbjct: 454 ELAYDEIKKGRQ--VYIVCPLIEEDEKEQLNSVETLYEKLTSTIFKNLRVEILHGKMKGN 511

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ +II+  +  + DVL+   ++  G+++P   ++ + +A++ G       L Q  GR  
Sbjct: 512 EKDDIIKRFKNHESDVLISTTVIEVGVNVPNASVMIVENAERFGL----AQLHQLRGRVG 567

Query: 680 R 680
           R
Sbjct: 568 R 568


>gi|145547248|ref|XP_001459306.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124427130|emb|CAK91909.1| unnamed protein product [Paramecium tetraurelia]
          Length = 712

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 16/175 (9%)

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  E++++I   +  + +VLV   +  EGLDI E  L+   D+   GF  S   +IQ +
Sbjct: 392 MKQKEQLQVIDKFK-NELNVLVATCIAEEGLDIGEVDLIICYDS---GF--SPIRMIQRM 445

Query: 676 GRAARNVNSKVILYADTITKSIQLA-IDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           GR  R  + ++I+    +T+  + A  +++  +  K ++  K  NIN  S   +I++   
Sbjct: 446 GRTGRKRDGRIIV---LLTEGKEAADYEKSVNKYSKLIKELKDFNINLYSSNPRILQSQP 502

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            I   D     I I  +Q  +  K      K L+KQ   +  N + +E  +I+ E
Sbjct: 503 QIKFIDGDIEQIDIKIKQDPIKTKN-----KDLKKQKR-SHKNTDQQETKQIKIE 551


>gi|108804816|ref|YP_644753.1| type III restriction enzyme, res subunit [Rubrobacter xylanophilus
           DSM 9941]
 gi|108766059|gb|ABG04941.1| type III restriction enzyme, res subunit [Rubrobacter xylanophilus
           DSM 9941]
          Length = 468

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E    ER EI+   R G++  ++  ++L EG+D+PE G+  IL         S+   +Q 
Sbjct: 378 ETPARERKEILDRFREGRYRAIIASDVLNEGVDVPEAGVGIILAGSA-----SRREYVQR 432

Query: 675 IGRAARNVNSK-VILY 689
           +GR  R    K  +LY
Sbjct: 433 LGRLLRPREGKRAVLY 448


>gi|46908056|ref|YP_014445.1| primosome assembly protein PriA [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|254852731|ref|ZP_05242079.1| primosome assembly protein PriA [Listeria monocytogenes FSL R2-503]
 gi|255522391|ref|ZP_05389628.1| primosome assembly protein PriA [Listeria monocytogenes FSL J1-175]
 gi|300763863|ref|ZP_07073860.1| primosomal protein N` [Listeria monocytogenes FSL N1-017]
 gi|46881326|gb|AAT04622.1| primosomal protein N` [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|258606054|gb|EEW18662.1| primosome assembly protein PriA [Listeria monocytogenes FSL R2-503]
 gi|300515599|gb|EFK42649.1| primosomal protein N` [Listeria monocytogenes FSL N1-017]
          Length = 797

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     ++++  R  + D+L+G  ++ +GLD P
Sbjct: 558 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLKSFRNHEADILLGTQMIAKGLDFP 616

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 617 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 655


>gi|116205049|ref|XP_001228335.1| hypothetical protein CHGG_10408 [Chaetomium globosum CBS 148.51]
 gi|88176536|gb|EAQ84004.1| hypothetical protein CHGG_10408 [Chaetomium globosum CBS 148.51]
          Length = 1227

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            R G  ++LV  ++L EG+D+P C LV     DK   L+   S IQ  GRA  + +   +
Sbjct: 455 FRKGTINLLVATSVLEEGIDVPACNLVICF--DKPDNLK---SFIQRRGRARMSASRLYL 509

Query: 688 LY---ADTITKSIQLAIDETTRRREKQLEHNKK 717
           L    AD  ++  Q    E  R+ E  +  N++
Sbjct: 510 LVEDEADGSSRGWQNLEQEMKRKYEDDMRENQR 542


>gi|47096545|ref|ZP_00234135.1| primosomal protein N` [Listeria monocytogenes str. 1/2a F6854]
 gi|254899479|ref|ZP_05259403.1| primosome assembly protein PriA [Listeria monocytogenes J0161]
 gi|254912382|ref|ZP_05262394.1| primosomal protein N` [Listeria monocytogenes J2818]
 gi|254936709|ref|ZP_05268406.1| primosomal protein N [Listeria monocytogenes F6900]
 gi|47015077|gb|EAL06020.1| primosomal protein N` [Listeria monocytogenes str. 1/2a F6854]
 gi|258609306|gb|EEW21914.1| primosomal protein N [Listeria monocytogenes F6900]
 gi|293590364|gb|EFF98698.1| primosomal protein N` [Listeria monocytogenes J2818]
          Length = 797

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     ++++  R  + D+L+G  ++ +GLD P
Sbjct: 558 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLKSFRNHEADILLGTQMIAKGLDFP 616

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 617 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 655


>gi|330831669|ref|YP_004394621.1| ATP-dependent RNA helicase rhlB [Aeromonas veronii B565]
 gi|328806805|gb|AEB52004.1| ATP-dependent RNA helicase rhlB [Aeromonas veronii B565]
          Length = 416

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 12/131 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK + ED+  +L     RV  +  +V   +R++I+ D   G  D+LV  ++   GL IP+
Sbjct: 252 TKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKGALDILVATDVAARGLHIPD 311

Query: 651 CGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYAD------TITKSIQLAID 702
              V   D   D E ++      I   GRA ++ +S  +   D       I + I  AI 
Sbjct: 312 VTHVFNYDLPDDAEDYVHR----IGRTGRAGKSGHSISLACEDYAFNLPAIEEYIHHAIP 367

Query: 703 ETTRRREKQLE 713
            +   RE  L+
Sbjct: 368 VSKYDREALLD 378


>gi|328774208|gb|EGF84245.1| hypothetical protein BATDEDRAFT_9192 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 581

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++E+I   + G ++VLV  ++  EGLDI +  L+   DA       S   ++Q +GR  
Sbjct: 459 EQLEVISKFQSGNYNVLVSTSIGEEGLDIGDVDLIVCYDAQT-----SPVRMLQRMGRTG 513

Query: 680 RNVNSKVIL 688
           R    ++++
Sbjct: 514 RKRQGRIVV 522


>gi|315022463|gb|EFT35490.1| transcription-repair coupling factor [Riemerella anatipestifer
           RA-YM]
          Length = 1096

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 96/221 (43%), Gaps = 28/221 (12%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF-VSYYDYYQ 233
           G+ GS  +   A++     +P +++  +K  A    +E +     + V YF  ++ + YQ
Sbjct: 14  GMAGSSPSLICAELFLTQNQPILLIVDDKEDAHYTTTELEELLGEDKVLYFPATHLEPYQ 73

Query: 234 PEA-----YVPRTDTYIEKESSINEQIDRMRHSA-TRSLLERNDCIVVSSVSCIYGIGSV 287
            E       V RT+   +  ++   ++    ++A    +L++ D   +S           
Sbjct: 74  TEKTQNANLVLRTEVLNQLNANPEPKVIVAHYAALCEKVLKKEDFKAISH---------- 123

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQ-QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                    +K+G  ++  +    L++Q  +   D     G F V G  +++F S+  D 
Sbjct: 124 --------HIKVGYQLD-FDFTGELLEQFNFHLTDFVSEPGEFAVRGGIVDVF-SYANDK 173

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            +R++ FGN++E I  F   T   I  VE++++ +N ++  
Sbjct: 174 PYRITFFGNEVESIKTFDIETQLSISKVESLQLVSNMNFAV 214



 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H ++   +  E I D   G++DVLV   ++  G+D+P    + I DA + G    
Sbjct: 771 RVITGHGQMDGKQLEENILDFMEGRYDVLVSTTIVESGVDVPNANTIFINDAQRFGM--- 827

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
              + Q  GR  R+ N K   Y   IT    +   +  +R E
Sbjct: 828 -ADVHQMRGRVGRS-NRKAFCY--LITPPFDMVTSDARKRLE 865


>gi|312863883|ref|ZP_07724121.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
           vestibularis F0396]
 gi|311101419|gb|EFQ59624.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
           vestibularis F0396]
          Length = 447

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   Q    ++ V TK  A+DL  YL    ++V  +H  +   ER  I+  ++  +F+ +
Sbjct: 237 LKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLEFEYI 296

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           V  +L   G+DI     V I DA  +      +  +  +GR  RN
Sbjct: 297 VATDLAARGIDIEGVSHV-INDAIPQDL----SFFVHRVGRTGRN 336


>gi|302783853|ref|XP_002973699.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
 gi|302787961|ref|XP_002975750.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
 gi|300156751|gb|EFJ23379.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
 gi|300158737|gb|EFJ25359.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
          Length = 445

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G ++++   TKR   ++ + +  R++    +H ++   +R   +   R G+F VLV  +
Sbjct: 252 KGGKVIVFAKTKRDTHNVAQAM-SRSVPCEALHGDIPQFQRERTLSGFRDGRFSVLVATD 310

Query: 641 LLREGLDIPECGLV 654
           +   GLDIP   LV
Sbjct: 311 VAARGLDIPNVDLV 324


>gi|237747216|ref|ZP_04577696.1| ATP-dependent DNA helicase recG [Oxalobacter formigenes HOxBLS]
 gi|229378567|gb|EEO28658.1| ATP-dependent DNA helicase recG [Oxalobacter formigenes HOxBLS]
          Length = 687

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 12/105 (11%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           + + V  +H  +K +E+  ++ D   G+  VLV   ++  G+D+P   L+ I  A++ G 
Sbjct: 506 KGLSVGLVHGRMKPVEKQRVMSDFVDGRIQVLVATTVIEVGVDVPNASLMVIEHAERFGL 565

Query: 665 LRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRR 708
               + L Q  GR  R +V+S  +L         Q  + ET R+R
Sbjct: 566 ----SQLHQLRGRVGRGDVDSVCLLM-------YQKPLGETARQR 599


>gi|217964023|ref|YP_002349701.1| primosomal protein N (ATP-dependent helicase PriA)(Replication
           factor Y) [Listeria monocytogenes HCC23]
 gi|217333293|gb|ACK39087.1| primosomal protein N (ATP-dependent helicase PriA)(Replication
           factor Y) [Listeria monocytogenes HCC23]
 gi|307571406|emb|CAR84585.1| primosomal protein N` (replication factor Y) [Listeria
           monocytogenes L99]
          Length = 797

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     ++++  R  + D+L+G  ++ +GLD P
Sbjct: 558 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLKSFRNHEADILLGTQMIAKGLDFP 616

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 617 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 655


>gi|325128442|gb|EGC51323.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           N1568]
          Length = 462

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K+         +  IGR  R   + + +
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGRAGRTGIAI 347


>gi|315650057|ref|ZP_07903136.1| transcription-repair coupling factor [Eubacterium saburreum DSM
           3986]
 gi|315487686|gb|EFU77990.1| transcription-repair coupling factor [Eubacterium saburreum DSM
           3986]
          Length = 1112

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +I V Y+H  +   +    + D   G  DVLV   ++  GLD+P    + + DAD+ G  
Sbjct: 801 DINVEYVHGRMDERQLEARMVDFINGDVDVLVTTTIVETGLDVPNANTIIVHDADRLGL- 859

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
              + L Q  GR  R   SK   YA  +    +L  +E ++R
Sbjct: 860 ---SQLYQLRGRVGR---SKRSAYAFLMYTGNKLLSEEASKR 895


>gi|307111894|gb|EFN60128.1| hypothetical protein CHLNCDRAFT_56582 [Chlorella variabilis]
          Length = 863

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RI++   TK   + +   L   + RV  +H      +R E I+  R   ++VLV  ++  
Sbjct: 710 RIIVFANTKSQCDAVARQLGNMDYRVTMLHGGKSQDQREESIKGFREDVYNVLVATDVAG 769

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+D+P   LV  ++ D    +   T  I   GRA R   +   L
Sbjct: 770 RGIDVPNVALV--INYDMANTIEQYTHRIGRTGRAGRKGTAVTFL 812


>gi|302553973|ref|ZP_07306315.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471591|gb|EFL34684.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 475

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A DL + L +R      +H ++    R + +R  R GK DVLV  ++   G+D+
Sbjct: 235 TKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDV 292


>gi|290968757|ref|ZP_06560294.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781053|gb|EFD93644.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 520

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 5/99 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TKR  +++ E L +R      +H ++   +R  +IR  R    D+LV  ++   G
Sbjct: 247 IIFVRTKRRVDEVAEALKKRGYSSEGIHGDLTQAKRDSVIRQFREKTIDILVATDVAARG 306

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           LDI   G+  + + D     +   S +  +GR  R   S
Sbjct: 307 LDI--SGVTHVFNYD---LPQDPESYVHRVGRTGRAGKS 340


>gi|260663566|ref|ZP_05864456.1| ATP-dependent DNA helicase RecG [Lactobacillus fermentum 28-3-CHN]
 gi|260552107|gb|EEX25160.1| ATP-dependent DNA helicase RecG [Lactobacillus fermentum 28-3-CHN]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H  +   E+  +++D + GK  V+V   ++  G+D P   ++ I DAD+ G    
Sbjct: 501 QVGLLHGRMNNDEKAVVMKDFQAGKVQVMVATTVIEVGVDNPNATVMLIYDADRFGL--- 557

Query: 668 KTSLIQTIGRAARNV-NSKVILYADTIT 694
              L Q  GR  R    S  +L AD  T
Sbjct: 558 -AQLHQLRGRVGRGKRQSYCLLVADPKT 584


>gi|254804394|ref|YP_003082615.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14]
 gi|254667936|emb|CBA04143.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14]
          Length = 680

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++     G  +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPELNIGL--VHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|229493168|ref|ZP_04386960.1| ATP-dependent DNA helicase, RecQ family [Rhodococcus erythropolis
           SK121]
 gi|229319899|gb|EEN85728.1| ATP-dependent DNA helicase, RecQ family [Rhodococcus erythropolis
           SK121]
          Length = 699

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++  LT   A DL   L ER   V     +    ER  + +DL   +   LV  + L  G
Sbjct: 253 IIYTLTVSAARDLASLLSERGHTVAAYTGQTDPTERESLEQDLLGNRVKALVATSALGMG 312

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSI 697
            D P+ G V  L A       S  S  Q +GRA R+ + + VIL      K I
Sbjct: 313 FDKPDLGFVVHLGAPS-----SPISYYQQVGRAGRSTDRADVILLPGAEDKQI 360


>gi|222474820|ref|YP_002563235.1| transcription repair coupling factor (mfd) [Anaplasma marginale
           str. Florida]
 gi|222418956|gb|ACM48979.1| transcription repair coupling factor (mfd) [Anaplasma marginale
           str. Florida]
          Length = 1152

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N++V   H    T    +I+ D   GKF VL+  +++  G+DIP    + + +AD  G  
Sbjct: 847 NVKVEVAHGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPFANTIIVHNADMFGL- 905

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R+
Sbjct: 906 ---AQLYQLKGRVGRS 918


>gi|145301126|ref|YP_001143967.1| ATP-dependent RNA helicase RhlB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|189040025|sp|A4STJ7|RHLB_AERS4 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|142853898|gb|ABO92219.1| ATP-dependent RNA helicase RhlB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 429

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK + ED+  +L     RV  +  +V   +R++I+ D   G  D+LV  ++   GL IP+
Sbjct: 265 TKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKGTLDILVATDVAARGLHIPD 324

Query: 651 CGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNS 684
              V   D   D E ++      I   GRA ++ +S
Sbjct: 325 VTHVFNYDLPDDAEDYVHR----IGRTGRAGKSGHS 356


>gi|148653434|ref|YP_001280527.1| transcription-repair coupling factor [Psychrobacter sp. PRwf-1]
 gi|148572518|gb|ABQ94577.1| transcription-repair coupling factor [Psychrobacter sp. PRwf-1]
          Length = 1271

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 592  KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
            +RMAE++ E + E  + V +     + LE  ++++     KF+VLV   ++  G+D+P  
Sbjct: 940  ERMAENIRELVPEARVGVAHGQMNERGLE--QVMQQFYHKKFNVLVCTTIIETGIDVPNA 997

Query: 652  GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
              + I  ADK G       L Q  GR  R+
Sbjct: 998  NTIIIERADKFGL----AQLHQLRGRVGRS 1023


>gi|67967669|dbj|BAE00317.1| unnamed protein product [Macaca fascicularis]
          Length = 480

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 266 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 324

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 325 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 383

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 384 ---NITKDL 389


>gi|74006728|ref|XP_850382.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 2 [Canis familiaris]
          Length = 663

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 433 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 550

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 551 ---NITKDL 556


>gi|15606049|ref|NP_213426.1| ATP-dependent RNA helicase DeaD [Aquifex aeolicus VF5]
 gi|2983229|gb|AAC06826.1| ATP-dependent RNA helicase DeaD [Aquifex aeolicus VF5]
          Length = 293

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR     +EDV  + N       ++++ V  KR A+ L E L  +  RV  +H ++    
Sbjct: 192 IREKIELLEDVLRDFN-------KVIVFVNRKRDAKFLGEKLSTKGFRVGALHGDLPQRR 244

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           R EI++  R G  +VLV  ++   GLDI E 
Sbjct: 245 REEILKKFRRGFINVLVATDVASRGLDISEV 275


>gi|333029638|ref|ZP_08457699.1| primosomal protein N' [Bacteroides coprosuis DSM 18011]
 gi|332740235|gb|EGJ70717.1| primosomal protein N' [Bacteroides coprosuis DSM 18011]
          Length = 819

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D + G+  +L+G  ++ +GLD     +V IL+AD          + R+   + Q  
Sbjct: 613 KIISDFQEGRTKILIGTQMVSKGLDFDHVSVVGILNADTMLNYPDFRAYERAYQLMAQVS 672

Query: 676 GRAAR-NVNSKVILYADTITKSIQLAI 701
           GRA R N   +VIL   ++   I L +
Sbjct: 673 GRAGRKNKRGRVILQTRSMDHPIILQV 699


>gi|324506599|gb|ADY42814.1| Eukaryotic initiation factor 4A [Ascaris suum]
 gi|324507947|gb|ADY43360.1| Eukaryotic initiation factor 4A [Ascaris suum]
          Length = 415

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y  +N+      + ++   T+R  + L   + +    V  MH +++  ER  I+R+ R
Sbjct: 274 DLYQTVNVT-----QAVIFCNTRRKVDYLANQMTKEKYTVSCMHGDMEQSERDLIMREFR 328

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  +LL  G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 329 SGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 374


>gi|319744324|gb|EFV96687.1| competence protein FA [Streptococcus agalactiae ATCC 13813]
          Length = 429

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           K+  R+++++D R  K  +LV   +L  G+  P    V ++ A+   F  +K+SL+Q  G
Sbjct: 333 KSTSRLKLVQDFRDNKLSILVSTTILERGVTFPSVD-VFVIQANHHLF--TKSSLVQISG 389

Query: 677 RAARNVN-SKVILY--ADTITKSIQLAIDE 703
           R  R +   + +LY   D  +KS+  AI E
Sbjct: 390 RVGRALERPEGLLYFLHDGKSKSMHQAIKE 419


>gi|299140874|ref|ZP_07034012.1| type III restriction enzyme, res subunit [Prevotella oris C735]
 gi|298577840|gb|EFI49708.1| type III restriction enzyme, res subunit [Prevotella oris C735]
          Length = 1097

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 74/152 (48%), Gaps = 19/152 (12%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKT 618
           I + +  +E  YD I +A          V  ++ AE++ E +Y+++ +     +HS +  
Sbjct: 361 IDTLKRDLEAGYDHILMAR---------VDERKKAEEIYEQIYKKHSKYSPVLIHSGISK 411

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           + + EI+  ++  +  ++V +++L EG D+P+  + A+ +  K     + T+  Q IGR 
Sbjct: 412 VSQREILEGIKEKRHRIIVCVDMLGEGFDLPQLKICAMHEMHK-----NITTSFQFIGRF 466

Query: 679 ARNVNSKV---ILYADTITKSIQLAIDETTRR 707
            R   S +    + A+ +    +  ++E  R+
Sbjct: 467 TRTTGSNLGTATVIANIVDNRFKGVLNELYRK 498


>gi|256274143|gb|EEU09053.1| Mph1p [Saccharomyces cerevisiae JAY291]
          Length = 993

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+I + + G+++VLV  ++  EGLDI E  L+   D        S    IQ +GR  R  
Sbjct: 558 EVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDT-----TSSPIKNIQRMGRTGRKR 612

Query: 683 NSKVIL 688
           + K++L
Sbjct: 613 DGKIVL 618


>gi|239996759|ref|ZP_04717283.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
          Length = 596

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK    +L + L  R   V  ++ ++    R   +  L+ GK D+LV  +++  
Sbjct: 249 MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDILVATDVVAR 308

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  ++  IL+     K +  +I+
Sbjct: 309 GLDVERVSHVINYDIPYDSESYVHR----IGRTGRAGRQGDA--ILFISHREKRLLFSIE 362

Query: 703 ETTRR 707
           +TT++
Sbjct: 363 KTTKQ 367


>gi|219110339|ref|XP_002176921.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411456|gb|EEC51384.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 529

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+ V TK+  + LT  L     + R MH +    ER   +R+ +  +  +LV  ++  
Sbjct: 378 RVLVFVETKKGCDMLTRSLRSDGFQARAMHGDKSQEERDWALREFKGMQSTLLVATDVAA 437

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +  +V   D     F +   S I  +GR  R
Sbjct: 438 RGLDVDDIRIVVNFD-----FPKEMDSYIHRVGRTGR 469


>gi|218440658|ref|YP_002378987.1| transcription-repair coupling factor [Cyanothece sp. PCC 7424]
 gi|218173386|gb|ACK72119.1| transcription-repair coupling factor [Cyanothece sp. PCC 7424]
          Length = 1168

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359
           G ++E K L  +L +  Y+R ++    G +   GD ++IFP   E +  R+  FG+++E+
Sbjct: 157 GMTLEAKTLDQNLTQLGYERVNLVETEGQWSRRGDIVDIFPVSAE-LPVRLEWFGDELEQ 215

Query: 360 ISEFYPLTGQKIRNVETIKIYANSHY 385
           + EF P T + + ++  + +   S +
Sbjct: 216 LREFDPSTQRSLDHITQLTLTPISFF 241


>gi|184155717|ref|YP_001844057.1| ATP-dependent DNA helicase RecG [Lactobacillus fermentum IFO 3956]
 gi|183227061|dbj|BAG27577.1| ATP-dependent DNA helicase RecG [Lactobacillus fermentum IFO 3956]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H  +   E+  +++D + GK  V+V   ++  G+D P   ++ I DAD+ G    
Sbjct: 501 QVGLLHGRMNNDEKAVVMKDFQAGKVQVMVATTVIEVGVDNPNATVMLIYDADRFGL--- 557

Query: 668 KTSLIQTIGRAARNV-NSKVILYADTIT 694
              L Q  GR  R    S  +L AD  T
Sbjct: 558 -AQLHQLRGRVGRGKRQSYCLLVADPKT 584


>gi|148242659|ref|YP_001227816.1| superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
 gi|147850969|emb|CAK28463.1| Superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
          Length = 560

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 19/129 (14%)

Query: 575 INLAAQQGLRILLTVL-------------TKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           I L  QQ L  LL VL             TK +   + E L    I    ++ +V    R
Sbjct: 234 ILLPHQQKLSALLRVLEAHGPGGVIIFARTKAVTVTVAEALEAEGIACSVLNGDVPQSLR 293

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAA 679
              I  L+ G+ DVLV  ++   GLD+   GLV   DA  D E ++      I   GRA 
Sbjct: 294 ERTIERLKQGRIDVLVATDVAARGLDVDRIGLVVNYDAPFDSEAYVHR----IGRTGRAG 349

Query: 680 RNVNSKVIL 688
           R  ++ + L
Sbjct: 350 RQGDAILFL 358


>gi|158520042|ref|YP_001527912.1| primosomal protein N' [Desulfococcus oleovorans Hxd3]
 gi|158508868|gb|ABW65835.1| primosomal protein N' [Desulfococcus oleovorans Hxd3]
          Length = 679

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 10/112 (8%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           LL + T+++ E + +   E ++      +  +    + I++DL+  K D+LVG  ++ +G
Sbjct: 428 LLGLGTEKVEEAVKQLFPEASVARLDRDTTTRKGAMLRILKDLKNRKIDILVGTQMIAKG 487

Query: 646 LDIPECGLVAILDAD--------KEGFLRSKTSLIQTIGRAARNVN-SKVIL 688
            D P   L+ ++ AD        + G  R+   L Q  GRA R V+  +VIL
Sbjct: 488 HDFPGITLIGVICADLSLNFPDFRAG-ERTFQLLAQVAGRAGRGVDPGRVIL 538



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQ 208
           DQ A +A L+  + +     LL G+TGSGKT    +V+    AM + A+V+ P   L AQ
Sbjct: 138 DQEAVVADLVSRLDAGFCSCLLAGITGSGKTEVYMRVVAAALAMGKTALVLVPEIALIAQ 197

Query: 209 LYSEFKNFFPHN 220
               F   F H 
Sbjct: 198 AEHRFCARFGHT 209


>gi|148270885|ref|YP_001245345.1| type III restriction enzyme, res subunit [Thermotoga petrophila
           RKU-1]
 gi|147736429|gb|ABQ47769.1| type III restriction enzyme, res subunit [Thermotoga petrophila
           RKU-1]
          Length = 464

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 18/123 (14%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+      +AE + +YL +        HS++   ER+  I + + G+ +VLV    L 
Sbjct: 326 RVLIFHERIEIAEYIFKYLKKIGFAAGIYHSKMPVKERLVSISEFKDGRINVLVACKALD 385

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTS----LIQTIGRAARNVNSK-----VILYADTIT 694
           EG D+P         A + G + + TS     IQ +GR  R   SK      +++ D + 
Sbjct: 386 EGFDVP---------AAETGIIVAGTSSVRQWIQRMGRILRRSTSKEFSKIYVMFVDKVE 436

Query: 695 KSI 697
           K +
Sbjct: 437 KDV 439


>gi|90075540|dbj|BAE87450.1| unnamed protein product [Macaca fascicularis]
          Length = 252

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 155 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 214

Query: 651 CGL 653
             L
Sbjct: 215 VSL 217


>gi|90413103|ref|ZP_01221100.1| putative transcription-repair coupling factor [Photobacterium
           profundum 3TCK]
 gi|90325946|gb|EAS42392.1| putative transcription-repair coupling factor [Photobacterium
           profundum 3TCK]
          Length = 1151

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 59/297 (19%), Positives = 126/297 (42%), Gaps = 38/297 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           ++G+    ++A++  A Q P + + P+   A +L  E   F    +VE  V+ +  ++  
Sbjct: 24  LSGAALALSVAELSHAHQGPVLAVVPDTQTALRLQPEISQF---TSVE--VNVFPDWETL 78

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMI 294
            Y    D +   +   ++++ R+    T+S     D I++  +S +   +   E   +  
Sbjct: 79  PY----DNFSPHQDITSDRLARLYKLPTQS-----DGIILVPISTLLQRLTPREYLRKHA 129

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + ++ GD +   +L   L    Y+  D  +  G +   G  +++FP    +  +R+  F 
Sbjct: 130 LIVRNGDRLSLDKLRLQLESSGYRHADQVMEHGEYASRGSLLDLFPMG-SNQPYRIDFFD 188

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++++ I +F P   +    +++I +     +    PT   A+    E  +MR  E     
Sbjct: 189 DEVDSIRQFDPENQRSTGEIDSINLLPAHEF----PTDEIAI----ENFRMRWRE----- 235

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
              EA+R  + I    + +        IE +          E   TLF+Y+P+++LL
Sbjct: 236 -RFEARREPESI---YQQVSKRTWPAGIEYWQPLFF-----ENTETLFDYLPDETLL 283


>gi|4689114|gb|AAD27766.1|AF077033_1 putative ATP-dependent RNA helicase ROK1 [Homo sapiens]
          Length = 598

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +   A++L   L    I V  +H+E    +R   +   R GK  VL+   LL  
Sbjct: 414 VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLAR 473

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILY 689
           G+D     LV   D     F  S    I  IGR  R  N  K I +
Sbjct: 474 GIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITF 514


>gi|39996428|ref|NP_952379.1| ATP-dependent DNA helicase RecG [Geobacter sulfurreducens PCA]
 gi|39983308|gb|AAR34702.1| ATP-dependent DNA helicase RecG [Geobacter sulfurreducens PCA]
          Length = 714

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 6/99 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           +MAE L   ++  ++R+  +H  +K  E+  ++R  +  + D+LV   ++  G+D+P   
Sbjct: 518 QMAEHLANDVFP-DLRLGVLHGRMKPEEKEAVMRSFKGREIDILVSTTVIEVGIDVPNAT 576

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA 690
           ++ I  A++ G     + L Q  GR  R +  S+ IL A
Sbjct: 577 VMVIEHAERFGL----SQLHQLRGRVGRGSATSRCILMA 611


>gi|77361885|ref|YP_341460.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76876796|emb|CAI88018.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 434

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V  K+  E L + L +R +  +  H +    ER  +I   + G+ +VL+  ++   G
Sbjct: 259 LIFVNAKKDCEHLAQKLEKRGVNAQVFHGDKGQSERTRVIEKFKAGEIEVLIATDIAARG 318

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDI +  +V   +       RS    +  IGR+ R
Sbjct: 319 LDIEKLPVVINFN-----LPRSPADYMHRIGRSGR 348


>gi|77413322|ref|ZP_00789517.1| competence protein F [Streptococcus agalactiae 515]
 gi|77160636|gb|EAO71752.1| competence protein F [Streptococcus agalactiae 515]
          Length = 429

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           K+  R+++++D R  K  +LV   +L  G+  P    V ++ A+   F  +K+SL+Q  G
Sbjct: 333 KSTSRLKLVQDFRDNKLSILVSTTILERGVTFPSVD-VFVIQANHHLF--TKSSLVQISG 389

Query: 677 RAARNVN-SKVILY--ADTITKSIQLAIDE 703
           R  R +   + +LY   D  +KS+  AI E
Sbjct: 390 RVGRALERPEGLLYFLHDGKSKSMHQAIKE 419


>gi|15600973|ref|NP_232603.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121586756|ref|ZP_01676539.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121727729|ref|ZP_01680817.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|147672261|ref|YP_001215860.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|153816784|ref|ZP_01969451.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|227811827|ref|YP_002811837.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|229506632|ref|ZP_04396141.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286]
 gi|229510570|ref|ZP_04400050.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|229517298|ref|ZP_04406743.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9]
 gi|229605109|ref|YP_002875813.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236]
 gi|254850597|ref|ZP_05239947.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255745988|ref|ZP_05419935.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101]
 gi|262162174|ref|ZP_06031189.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1]
 gi|262167359|ref|ZP_06035068.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27]
 gi|298500057|ref|ZP_07009863.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
 gi|9657596|gb|AAF96116.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549053|gb|EAX59090.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121629946|gb|EAX62356.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|126512587|gb|EAZ75181.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|146314644|gb|ABQ19184.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|227010969|gb|ACP07180.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|227014875|gb|ACP11084.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|229345334|gb|EEO10307.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9]
 gi|229353015|gb|EEO17955.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|229356983|gb|EEO21901.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286]
 gi|229371595|gb|ACQ62017.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236]
 gi|254846302|gb|EET24716.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255735742|gb|EET91140.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101]
 gi|262024243|gb|EEY42935.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27]
 gi|262028249|gb|EEY46907.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1]
 gi|297542038|gb|EFH78089.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
          Length = 451

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVY--------DEINLAAQQG--LRILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y        D +    ++G   ++L+ + TK  A 
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L  YL E+ +    +H       R   + D + G+  +LV  ++   G+DIP+
Sbjct: 258 RLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQ 311


>gi|283779377|ref|YP_003370132.1| DEAD/H associated domain-containing protein [Pirellula staleyi DSM
           6068]
 gi|283437830|gb|ADB16272.1| DEAD/H associated domain protein [Pirellula staleyi DSM 6068]
          Length = 1510

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 11/122 (9%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERI 622
           Q E+VY +++   Q     L+ V T+R+AE     LTE L E    V   H  +    R+
Sbjct: 281 QWEEVYAQLSSMIQSHRSTLVFVNTRRLAERVSHRLTELLGEEA--VASHHGSLSKQIRL 338

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +  + L+ GK   +V    L  G+DI    LV  +     G  RS  + +Q +GR+  N+
Sbjct: 339 DAEQRLKAGKLRAIVATASLEMGIDIGYIDLVCQI-----GSPRSIATFLQRVGRSGHNL 393

Query: 683 NS 684
            +
Sbjct: 394 GA 395


>gi|282164729|ref|YP_003357114.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE]
 gi|282157043|dbj|BAI62131.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE]
          Length = 471

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TKR  ++LT+ L ER      +H ++   +R  ++R  + G  +VLV  ++   G
Sbjct: 245 IVFVRTKRRVDELTKALGERGYPAEGIHGDLAQSKRDSVMRGFKEGTTEVLVATDVAARG 304

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDI     V  LD  ++       S +  IGR  R
Sbjct: 305 LDISGVTHVYNLDIPQD-----PDSYVHRIGRTGR 334


>gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
 gi|296027164|gb|ADG77934.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
           DSM 20162]
          Length = 602

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 18/171 (10%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R      ++ ++   +R   I  L+ GK D+LV  ++   
Sbjct: 270 MIIFVRTKSATEELAEKLRARGHAAAAINGDIVQAQRERTIGQLKDGKVDILVATDVAAR 329

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  ++  +L+     + +  AI+
Sbjct: 330 GLDVERISHVVNYDIPHDTESYVHR----IGRTGRAGRKGDA--LLFVTPRERHLLRAIE 383

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           + TR+   ++      ++N   V EK  E I         T N+S D  Q+
Sbjct: 384 KATRQPLTEIGLPSVEDVNAHRV-EKFGESI---------TENLSNDHLQM 424


>gi|194207332|ref|XP_001915885.1| PREDICTED: Fanconi anemia, complementation group M [Equus caballus]
          Length = 2127

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 10/88 (11%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM----HSEVKTL------ERIEIIRDLRLGKF 633
           R+++    +   +++ E L +    +R M    H+  K++      E++E+++  R G +
Sbjct: 554 RVMIFSSFRDSVQEIAEMLLQHQPMIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGY 613

Query: 634 DVLVGINLLREGLDIPECGLVAILDADK 661
           + LV   +  EGLDI E  L+   DA K
Sbjct: 614 NTLVSTCVGEEGLDIGEVDLIICFDAQK 641


>gi|167646874|ref|YP_001684537.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp.
           K31]
 gi|167349304|gb|ABZ72039.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
          Length = 691

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 15/166 (9%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H ++   E+  ++ D   GK  VLV   ++  G+++P   ++ I  AD+ G L   
Sbjct: 509 VGLVHGQMPAAEKDAVMADFVDGKVSVLVATTVVEVGVNVPNASIMVIEHADRFG-LAQL 567

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK-----HNINPQ 723
             L   +GR +R  +S V+LY   +++  Q  +D   RR +   E  +K        +P 
Sbjct: 568 HQLRGRVGRGSRE-SSCVLLYDPPLSEVAQQRLD-ILRRSDDGFEIAEKDLELRGGGDPL 625

Query: 724 SVKEK---IMEVIDPI----LLEDAATTNISIDAQQLSLSKKKGKA 762
            +K+      ++ DP+    L+  AA     I A+   L+  +G+A
Sbjct: 626 GLKQSGFPAYKLADPVAHRDLIAVAADDARLILARDPDLTSPRGQA 671


>gi|21410145|gb|AAH30895.1| Ddx21 protein [Mus musculus]
          Length = 689

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  QG R ++   TK+ A++L++    +    + +H ++   +R   ++  R G F VLV
Sbjct: 345 SGHQG-RTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFRNGNFGVLV 402

Query: 638 GINLLREGLDIPECGLV 654
             N+   GLDIPE  LV
Sbjct: 403 ATNVAARGLDIPEVDLV 419


>gi|71277994|ref|YP_271015.1| primosomal protein N' [Colwellia psychrerythraea 34H]
 gi|71143734|gb|AAZ24207.1| primosomal protein N' [Colwellia psychrerythraea 34H]
          Length = 736

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 19/157 (12%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+++   L E   E +I      S  K  E  ++++++   K  +LVG  +L +G   P+
Sbjct: 499 TEQLESRLEELFPESSIVRIDRDSTRKKGELAKLLQEVTDKKHQLLVGTQMLAKGHHFPD 558

Query: 651 CGLVAILDADKEGF---LRSKTS----LIQTIGRAARNVN-SKVILYADTITKSIQLAID 702
             LVA+LD D   F    R+       LIQ  GRA R     KV++ ++ +   +     
Sbjct: 559 VTLVAVLDVDGALFSFDFRASEQMAQLLIQVAGRAGRASKPGKVLVQSNFVDHPLL---- 614

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
                  + L HN  H+   Q++ E+   ++ P   +
Sbjct: 615 -------QDLVHNGYHHFAHQALTERKQALLPPFTFQ 644


>gi|74182539|dbj|BAB25270.3| unnamed protein product [Mus musculus]
          Length = 427

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   GLDI
Sbjct: 3   VTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDI 62

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           P    V   D  ++  + + T  I   GRA      K + Y     K    A D
Sbjct: 63  PSIKTVINYDVARD--IDTHTHRIGRTGRAGE----KGVAYTLLTPKDSNFAGD 110


>gi|172056647|ref|YP_001813107.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171989168|gb|ACB60090.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 391

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 26/184 (14%)

Query: 562 RSARTQVEDVYDEIN----------LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           R   TQV+  Y E++          LA  QG ++L  +  +     L   L + +++ R 
Sbjct: 203 RVMSTQVKFGYIEMSRRLKPEYLRRLANMQGAKVLTFINNRSFLGPLNGELSKFSLKYRI 262

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           + +E    ER+E +R  + G+F +LV   L   GLDI     V   D  +     S    
Sbjct: 263 LDAEKGKRERMETLRSYKRGEFPLLVTTGLAARGLDIEAVTHVVHYDLPE-----SFDDF 317

Query: 672 IQTIGRAARNVNSKVIL---------YADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
           +   GR  R   S ++L         +  T+TK + + ++E    R + +   K+    P
Sbjct: 318 VHRSGRTGRGNASGMVLALVTDHDLKHLKTLTKQMGVELEEMEIYRGEVIP--KREETEP 375

Query: 723 QSVK 726
           +++K
Sbjct: 376 KTIK 379


>gi|332860595|ref|XP_001146428.2| PREDICTED: ATP-dependent RNA helicase DDX3X-like, partial [Pan
           troglodytes]
          Length = 448

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +LV   +   G
Sbjct: 304 LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 363

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           LDI     V   D  +D E ++    +T  +  +G A    N + I     ITK +
Sbjct: 364 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI----NITKDL 415


>gi|313618295|gb|EFR90349.1| primosomal protein N' [Listeria innocua FSL S4-378]
          Length = 686

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     ++++  R  + D+L+G  ++ +GLD P
Sbjct: 447 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLKSFRNHEADILLGTQMIAKGLDFP 505

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 506 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 544


>gi|311278491|ref|YP_003940722.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308747686|gb|ADO47438.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 444

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    ++ E L    I   Y+  E+   +R+E I+ L  G+ +VL+  ++  
Sbjct: 250 RSIVFVRKRERVHEMAELLRAAGINNCYLEGEMAQAKRVEGIKRLTDGRVNVLIATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DIP+   V   D       RS  + +  IGR  R
Sbjct: 310 RGIDIPDVSHVFNFD-----MPRSGDTYLHRIGRTGR 341


>gi|307203141|gb|EFN82321.1| ATP-dependent RNA helicase p62 [Harpegnathos saltator]
          Length = 410

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 16/162 (9%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           +T +E+++D    A +   +I++ V TK+  E +T  +         +H +    ER  +
Sbjct: 226 KTLLENIHD----ANEDSSKIIIFVETKKKVESITRSIRRFGWPAVCIHGDKSQHERDFV 281

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R  K  +LV  ++   GLD+ +   V   D     +  S    I  IGR  R+ N+
Sbjct: 282 LREFRNKKSSILVATDVAARGLDVDDVKYVINFD-----YPSSSEDYIHRIGRTGRSGNT 336

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
               YA    ++ + A D     +E       K  +NPQ +K
Sbjct: 337 GT-SYALFTPQNARQARDLINVLKE------AKQEVNPQLIK 371


>gi|288556423|ref|YP_003428358.1| DNA/RNA helicase [Bacillus pseudofirmus OF4]
 gi|288547583|gb|ADC51466.1| DNA/RNA helicase [Bacillus pseudofirmus OF4]
          Length = 423

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 13/122 (10%)

Query: 569 EDVYDEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +DV++ I  A    +  R L+   + + +  L E   ++ +    ++S+  + +R   IR
Sbjct: 40  DDVFNNIYDAWLKYKQTRTLVFCSSIKQSNYLAECFQQKGVSCISLNSKTSSTDRKGAIR 99

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL---IQTIGRAARNVN 683
            L  G+ ++++ ++L  EG+DIP          D   F+R   SL   IQ +GR  R  +
Sbjct: 100 KLETGELEIILTVDLFNEGIDIPT--------VDTLLFVRPTESLSVFIQQVGRGLRLAD 151

Query: 684 SK 685
            K
Sbjct: 152 DK 153


>gi|283781500|ref|YP_003372255.1| ATP-dependent DNA helicase RecG [Pirellula staleyi DSM 6068]
 gi|283439953|gb|ADB18395.1| ATP-dependent DNA helicase RecG [Pirellula staleyi DSM 6068]
          Length = 699

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           + IR   +H ++ + E+ EI+     GK  VL+   ++  G+D+P   L+ I D ++ G 
Sbjct: 515 QGIRCGMLHGKMSSTEKDEILTRFEAGKLQVLIATPVIEVGIDVPNATLMTIEDGERFGL 574

Query: 665 LRSKTSLIQTIGRAARN 681
                 L Q  GR  R 
Sbjct: 575 ----AQLHQLRGRVTRG 587


>gi|282853714|ref|ZP_06263051.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
 gi|282583167|gb|EFB88547.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
          Length = 494

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 63/126 (50%), Gaps = 8/126 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G   +LV  ++  
Sbjct: 238 KVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGDATILVATDVAA 297

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVILYADT-----ITKSI 697
            G+D+   G+  +++ +     ++    I   GRA A+ V   ++ +AD      I K++
Sbjct: 298 RGIDV--TGVSHVINHECPEDEKTYVHRIGRTGRAGAKGVAVTLVDWADVTRWKLINKAL 355

Query: 698 QLAIDE 703
            L + E
Sbjct: 356 NLELSE 361


>gi|304316960|ref|YP_003852105.1| ATP-dependent DNA helicase RecG [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778462|gb|ADL69021.1| ATP-dependent DNA helicase RecG [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 682

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 69/136 (50%), Gaps = 14/136 (10%)

Query: 588 TVLTKRMAEDLTEYLYE---RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++  + AE + E +Y+   +  RV  +H  + + ++ +++ +   GK D+LV   ++  
Sbjct: 480 NLINAKSAEVVYEEIYKGVFKEFRVGLVHGGMSSNDKNKVMNEFVNGKIDILVSTTVIEV 539

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVIL----YADTITKSIQL 699
           G+++P   ++ I +A++ G       L Q  GR  R+ N S  IL    Y+D + K +++
Sbjct: 540 GVNVPNASVIVIENAERFGL----AQLHQLRGRVGRSSNQSYCILIAYSYSDVVKKRLKV 595

Query: 700 A--IDETTRRREKQLE 713
               ++  +  EK LE
Sbjct: 596 MTETNDGFKIAEKDLE 611


>gi|255072433|ref|XP_002499891.1| predicted protein [Micromonas sp. RCC299]
 gi|226515153|gb|ACO61149.1| predicted protein [Micromonas sp. RCC299]
          Length = 394

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LT+ + + N  V  MH ++   ER  I+ + R
Sbjct: 253 DLYDTLTIT-----QAVIFCNTKRKVDWLTDKMRQNNFTVSSMHGDMPQKERDAIMGEFR 307

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R
Sbjct: 308 GGTTRVLITTDVWARGIDVQQVSLVINYD-----LPNNRENYIHRIGRSGR 353


>gi|224500055|ref|ZP_03668404.1| primosome assembly protein PriA [Listeria monocytogenes Finland
           1988]
          Length = 769

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     ++++  R  + D+L+G  ++ +GLD P
Sbjct: 558 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLKSFRNHEADILLGTQMIAKGLDFP 616

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 617 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 655


>gi|221196649|ref|ZP_03569696.1| putative ATP-dependent helicase lhr [Burkholderia multivorans
           CGD2M]
 gi|221203318|ref|ZP_03576337.1| dead/H associated family [Burkholderia multivorans CGD2]
 gi|221177252|gb|EEE09680.1| dead/H associated family [Burkholderia multivorans CGD2]
 gi|221183203|gb|EEE15603.1| putative ATP-dependent helicase lhr [Burkholderia multivorans
           CGD2M]
          Length = 1466

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSE 615
           P+E   A    E +YD I   A      L+ V T+R AE +  +L ER  +  +   H  
Sbjct: 245 PLEPVMANDVWEQLYDRIAALAAAHRTTLVFVNTRRTAERMARHLAERLGKDAIAAHHGS 304

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ G+  +LV    L  G+DI +  LV      + G  R     +Q +
Sbjct: 305 LAKEHRFDAEQRLKRGELKLLVATASLELGIDIGDVDLVC-----QVGSPRGIAPFLQRV 359

Query: 676 GRAARNVNS 684
           GR+  +V  
Sbjct: 360 GRSGHHVGG 368


>gi|207344252|gb|EDZ71457.1| YIR002Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 993

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+I + + G+++VLV  ++  EGLDI E  L+   D        S    IQ +GR  R  
Sbjct: 558 EVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDT-----TSSPIKNIQRMGRTGRKR 612

Query: 683 NSKVIL 688
           + K++L
Sbjct: 613 DGKIVL 618


>gi|254427874|ref|ZP_05041581.1| transcription-repair coupling factor [Alcanivorax sp. DG881]
 gi|196194043|gb|EDX89002.1| transcription-repair coupling factor [Alcanivorax sp. DG881]
          Length = 1159

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H +++  E   ++ D    +F+VLV   ++  G+D+P    + I  ADK G  
Sbjct: 841 DARVGIAHGQMRERELEAVMSDFYHRRFNVLVSTTIIETGIDVPSANTIIIDRADKLGL- 899

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
                L Q  GR  R+ +     YA  IT S ++   +  +R E
Sbjct: 900 ---AQLHQLRGRVGRSHHQA---YAYLITPSPKVMTKDAIKRLE 937



 Score = 37.7 bits (86), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK+GD  + +   S LV   Y+++D     G F V G  ++I+P   E   +R+ +F ++
Sbjct: 134 LKVGDRFDMEATRSRLVASGYRQRDNVYEHGEFAVRGAIMDIYPMGAEQ-PFRIELFDDE 192

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHY 385
           IE +  F   + +    V+ I +   + +
Sbjct: 193 IESLRLFEAESQRSTGKVDDITLLPAAEF 221


>gi|167753303|ref|ZP_02425430.1| hypothetical protein ALIPUT_01576 [Alistipes putredinis DSM 17216]
 gi|167659234|gb|EDS03364.1| hypothetical protein ALIPUT_01576 [Alistipes putredinis DSM 17216]
          Length = 476

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           +K+  ++L   L    + V  MHS++   +R +++ D +  K  +LV  +++  G+DI +
Sbjct: 253 SKQKVKELAHTLKRMKLDVAPMHSDLDQEKREQVMLDFKNNKVRILVATDIVARGIDIED 312

Query: 651 CGLVAILDA--DKEGFLR--SKTSLIQTIGRAARNVN 683
            G+V   D   D E ++    +T+     GRA   VN
Sbjct: 313 IGMVINYDVPHDPEDYIHRIGRTARASATGRAVTFVN 349


>gi|160942234|ref|ZP_02089543.1| hypothetical protein CLOBOL_07120 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434791|gb|EDP12558.1| hypothetical protein CLOBOL_07120 [Clostridium bolteae ATCC
           BAA-613]
          Length = 829

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 8/108 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK---TLERIEIIRDLRLGKFDVLVGIN 640
           R L    ++  AE + +    RNI    ++S+      +ER E I  L+ G+  V+  ++
Sbjct: 451 RALGFCCSRTHAEQMAKEFCRRNIPAAAVYSDSDGEYAVERSEAIEKLKRGELKVIFSVD 510

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +  EGLDI E  +V  L   +     S    +Q +GR  R    K  L
Sbjct: 511 MFNEGLDISEIDMVMFLRPTE-----SPVVFLQQLGRGLRKSRDKEYL 553


>gi|146417127|ref|XP_001484533.1| hypothetical protein PGUG_03914 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 705

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 5/101 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           QQ  RI++ V  K MA  L   L    ++V  +H  +   +R++ ++D R     VL+  
Sbjct: 445 QQQNRIVVFVSRKEMAHRLRIVLGLLGMKVLELHGSLTQEQRLQSVKDFRSLAVPVLICT 504

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +L   GLDIP+  +V   D  K     +    +  +GR AR
Sbjct: 505 DLAARGLDIPKIEIVINFDMPK-----THEIYLHRVGRTAR 540


>gi|6322192|ref|NP_012267.1| Mph1p [Saccharomyces cerevisiae S288c]
 gi|731905|sp|P40562|MPH1_YEAST RecName: Full=ATP-dependent DNA helicase MPH1; AltName:
           Full=Mutator phenotype protein 1
 gi|557851|emb|CAA86204.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|190406221|gb|EDV09488.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
 gi|259147261|emb|CAY80514.1| Mph1p [Saccharomyces cerevisiae EC1118]
 gi|285812649|tpg|DAA08548.1| TPA: Mph1p [Saccharomyces cerevisiae S288c]
          Length = 993

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+I + + G+++VLV  ++  EGLDI E  L+   D        S    IQ +GR  R  
Sbjct: 558 EVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDT-----TSSPIKNIQRMGRTGRKR 612

Query: 683 NSKVIL 688
           + K++L
Sbjct: 613 DGKIVL 618


>gi|20373098|dbj|BAB91216.1| RNA helicase [Mesocricetus auratus]
          Length = 662

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 433 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 550

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 551 ---NITKDL 556


>gi|328473549|gb|EGF44386.1| primosome assembly protein PriA [Listeria monocytogenes 220]
          Length = 770

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     ++++  R  + D+L+G  ++ +GLD P
Sbjct: 558 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLKSFRNHEADILLGTQMIAKGLDFP 616

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 617 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 655


>gi|314983245|gb|EFT27337.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA3]
 gi|315090093|gb|EFT62069.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA4]
          Length = 494

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 63/126 (50%), Gaps = 8/126 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G   +LV  ++  
Sbjct: 238 KVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGDATILVATDVAA 297

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVILYADT-----ITKSI 697
            G+D+   G+  +++ +     ++    I   GRA A+ V   ++ +AD      I K++
Sbjct: 298 RGIDV--TGVSHVINHECPEDEKTYVHRIGRTGRAGAKGVAVTLVDWADVTRWKLINKAL 355

Query: 698 QLAIDE 703
            L + E
Sbjct: 356 NLELSE 361


>gi|303237011|ref|ZP_07323583.1| transcription-repair coupling factor [Prevotella disiens
           FB035-09AN]
 gi|302482791|gb|EFL45814.1| transcription-repair coupling factor [Prevotella disiens
           FB035-09AN]
          Length = 1194

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 15/194 (7%)

Query: 525 TIVVSATPGSWELE-QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     I+R       P++   +    E + D IN    +  
Sbjct: 784 TLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEISTFSAETIADAINFEMSRNG 843

Query: 584 RILLTVLTKRMAE--DLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++    +  R+A   +L   +  Y  + RV   H ++K  E  EII       +DVL+  
Sbjct: 844 QVFF--VNDRIANLPELASLIKKYVPDCRVAIGHGQMKPEELEEIIIGFMNHDYDVLLST 901

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I DA K G     + L Q  GR  R+ N K   Y   +      
Sbjct: 902 TIVENGIDISNANTIIINDAHKFGL----SDLHQMRGRVGRS-NKKAFCY---LLAPPLA 953

Query: 700 AIDETTRRREKQLE 713
           A++   RRR + LE
Sbjct: 954 ALNPDARRRLEALE 967


>gi|290987403|ref|XP_002676412.1| predicted protein [Naegleria gruberi]
 gi|284090014|gb|EFC43668.1| predicted protein [Naegleria gruberi]
          Length = 407

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           +++  E L E L +++  V  MH E+   +R  I+ + R     VL+  +LL  G+D+  
Sbjct: 282 SRKKVEQLAEQLNKKDFTVSCMHGEMDPKDRELIMHEFRTSASRVLITTDLLARGIDVHH 341

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D       R K + +  IGR+ R
Sbjct: 342 VSLVINFD-----LPRHKENYLHRIGRSGR 366


>gi|255002792|ref|ZP_05277756.1| transcription repair coupling factor (mfd) [Anaplasma marginale
           str. Puerto Rico]
          Length = 1152

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N++V   H    T    +I+ D   GKF VL+  +++  G+DIP    + + +AD  G  
Sbjct: 847 NVKVEVAHGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPFANTIIVHNADMFGL- 905

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R+
Sbjct: 906 ---AQLYQLKGRVGRS 918


>gi|255101321|ref|ZP_05330298.1| ATP-dependent RNA helicase [Clostridium difficile QCD-63q42]
          Length = 497

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 9/102 (8%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK     L   + +    +R +H+++    RI +I+D +  KF++LV  ++   
Sbjct: 248 VIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILVSSDVASR 307

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNS 684
           G+ I +  LV   D   DKE +       I  IGR  R  NS
Sbjct: 308 GIHIDDISLVINYDVPQDKENY-------IHRIGRTGRKGNS 342


>gi|225868016|ref|YP_002743964.1| primosomal protein N' [Streptococcus equi subsp. zooepidemicus]
 gi|225701292|emb|CAW98291.1| putative primosomal protein N' [Streptococcus equi subsp.
           zooepidemicus]
          Length = 794

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIG 676
           I++    G  DVL+G  ++ +GLD P   LV +L+AD    L       R+   L Q  G
Sbjct: 588 ILKAFGNGDADVLLGTQMIAKGLDFPNVTLVGVLNADTSLHLPDFRASERTFQLLTQVAG 647

Query: 677 RAAR 680
           RA R
Sbjct: 648 RAGR 651


>gi|215486325|ref|YP_002328756.1| transcription-repair coupling factor [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312968807|ref|ZP_07783014.1| transcription-repair coupling factor [Escherichia coli 2362-75]
 gi|215264397|emb|CAS08754.1| transcription-repair coupling factor [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312286209|gb|EFR14122.1| transcription-repair coupling factor [Escherichia coli 2362-75]
 gi|323190466|gb|EFZ75740.1| transcription-repair coupling factor [Escherichia coli RN587/1]
          Length = 1148

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  V+ I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVDAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|159489124|ref|XP_001702547.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280569|gb|EDP06326.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 600

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 6/111 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+   + ++ +QGL  L+ V TKR A++L   L    +    +H +    +R   +R  +
Sbjct: 390 DLISTVEVSRRQGL-TLVFVETKRGADELERILTRNQLPATSIHGDRSQEQREMALRSFK 448

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GK  V+V  ++   GLDIP    V   D  K+         +  IGR  R
Sbjct: 449 SGKTPVMVATDVAARGLDIPHVTHVINYDLPKD-----IDDYVHRIGRTGR 494


>gi|91206541|sp|Q7SBC6|DBP2_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-2
          Length = 562

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TKR+A+D+T +L +       +H + +  ER  ++   + GK  ++V  ++  
Sbjct: 383 KILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVAS 442

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+    +  +L+ D   +  +    I  IGR  R
Sbjct: 443 RGIDVRN--ITHVLNYD---YPNNSEDYIHRIGRTGR 474


>gi|146301226|ref|YP_001195817.1| primosomal protein N' [Flavobacterium johnsoniae UW101]
 gi|146155644|gb|ABQ06498.1| primosomal protein N' [Flavobacterium johnsoniae UW101]
          Length = 815

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II   +  + D+LVG  +L +GLD     LV I++AD          F RS   + Q  
Sbjct: 609 KIIDTFKNREIDILVGTQMLAKGLDFDNVSLVGIMNADNMLHHPDFRAFERSFQMMTQVA 668

Query: 676 GRAARN 681
           GRA R+
Sbjct: 669 GRAGRS 674


>gi|74006736|ref|XP_861449.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 8 [Canis familiaris]
          Length = 663

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 433 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 550

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 551 ---NITKDL 556


>gi|332685778|ref|YP_004455552.1| helicase PriA [Melissococcus plutonius ATCC 35311]
 gi|332369787|dbj|BAK20743.1| helicase PriA essential for oriC/ DnaA-independent DNA replication
           [Melissococcus plutonius ATCC 35311]
          Length = 809

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  GRA R
Sbjct: 610 GKADILLGTQMIAKGLDFPNVTLVGVLNADTSLNLPDFRSSERTFQLLTQVSGRAGR 666


>gi|317057762|ref|YP_004106229.1| transcription-repair coupling factor [Ruminococcus albus 7]
 gi|315450031|gb|ADU23595.1| transcription-repair coupling factor [Ruminococcus albus 7]
          Length = 1156

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++   E  EI R +   + D+LV   L+  G+D+P    + I DAD+ G  
Sbjct: 847 DARIGYAHGQMDEKELSEIWRQVVEHEIDILVCTTLIETGIDVPNVNTLIIEDADRLGL- 905

Query: 666 RSKTSLIQTIGRAARNVNSKVILY 689
              + L Q  GR  R+ N +   Y
Sbjct: 906 ---SQLHQLRGRVGRS-NRRAFAY 925


>gi|298505437|gb|ADI84160.1| ATP-dependent DNA helicase RecG [Geobacter sulfurreducens KN400]
          Length = 767

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 6/99 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           +MAE L   ++  ++R+  +H  +K  E+  ++R  +  + D+LV   ++  G+D+P   
Sbjct: 571 QMAEHLANDVFP-DLRLGVLHGRMKPEEKEAVMRSFKGREIDILVSTTVIEVGIDVPNAT 629

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA 690
           ++ I  A++ G     + L Q  GR  R +  S+ IL A
Sbjct: 630 VMVIEHAERFGL----SQLHQLRGRVGRGSATSRCILMA 664


>gi|282909394|ref|ZP_06317209.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282326664|gb|EFB56962.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
          Length = 467

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++LV  ++   GLDI  
Sbjct: 210 TKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDI-- 267

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D      S T  I   GRA +
Sbjct: 268 SGVSHVYNFDIPQDTESYTHRIGRTGRAGK 297


>gi|257068518|ref|YP_003154773.1| transcription-repair coupling factor Mfd [Brachybacterium faecium
           DSM 4810]
 gi|256559336|gb|ACU85183.1| transcription-repair coupling factor Mfd [Brachybacterium faecium
           DSM 4810]
          Length = 1211

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 19/130 (14%)

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQM 293
           PR DT  ++ S++     R+ H  +    E    +V+  V  +      G+G +      
Sbjct: 115 PRADTVAKRLSTLR----RIAHPES----EDPAHVVLMPVRSLLQPIAKGLGELRP---- 162

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            V+  +GD+   ++L   L    Y R D+   RG F V G  +++FP   E    RV +F
Sbjct: 163 -VRAAVGDTYPLEDLERDLTGAAYARVDMVEKRGEFAVRGGILDVFPP-TEPHPVRVDLF 220

Query: 354 GNDIEEISEF 363
           G++I+++  F
Sbjct: 221 GDEIDDVRYF 230


>gi|227515691|ref|ZP_03945740.1| DNA helicase RecG [Lactobacillus fermentum ATCC 14931]
 gi|227085939|gb|EEI21251.1| DNA helicase RecG [Lactobacillus fermentum ATCC 14931]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H  +   E+  +++D + GK  V+V   ++  G+D P   ++ I DAD+ G    
Sbjct: 501 QVGLLHGRMNNDEKAVVMKDFQAGKVQVMVATTVIEVGVDNPNATVMLIYDADRFGL--- 557

Query: 668 KTSLIQTIGRAARNV-NSKVILYADTIT 694
              L Q  GR  R    S  +L AD  T
Sbjct: 558 -AQLHQLRGRVGRGKRQSYCLLVADPKT 584


>gi|227517284|ref|ZP_03947333.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0104]
 gi|257417234|ref|ZP_05594228.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis AR01/DG]
 gi|227075291|gb|EEI13254.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0104]
 gi|257159062|gb|EEU89022.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis ARO1/DG]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 521 LRPTTIVVSATPGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYD 573
           L+P  + ++ATP    L      E    II E    P G +  P+E R  R  Q++ V +
Sbjct: 400 LKPDVLFMTATPIPRTLAITAYGEMDVSIIDEM---PAGRI--PIETRWIRPPQLDTVLE 454

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDL---------TEYLYERNIRVRYMHSEVKTLERI 622
             E  LA      I+  ++ +  A D+          +  Y    +V  +H ++K  E+ 
Sbjct: 455 WMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKD 514

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+++ +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  GR  R  
Sbjct: 515 DIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLRGRVGRGS 570

Query: 683 N-SKVILYAD 691
           + S  IL A+
Sbjct: 571 SASYCILVAN 580


>gi|224073176|ref|XP_002304009.1| predicted protein [Populus trichocarpa]
 gi|222841441|gb|EEE78988.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L  +L         +H +    ER + +R  + G   +LV  ++   G
Sbjct: 226 LVFVETKKGADSLEHWLCINGFPATSIHGDRSQQEREQALRSFKTGNTPILVATDVAARG 285

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  NS +
Sbjct: 286 LDIPHVAHVVNFDLPND-----IDDYVHRIGRTGRAGNSGL 321


>gi|195155931|ref|XP_002018854.1| GL26027 [Drosophila persimilis]
 gi|194115007|gb|EDW37050.1| GL26027 [Drosophila persimilis]
          Length = 578

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 5/110 (4%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I++  +     ++ V TKR A+ L  YL E       +H +    +R + +RD + GK  
Sbjct: 399 IDILKESADGTIVFVETKRGADFLASYLSEAEHPTTSIHGDRLQSQREQALRDFKTGKMK 458

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           VL+  ++   GLDI     V   D  K     +    +  IGR  R  N+
Sbjct: 459 VLIATSVASRGLDIKNVKHVVNYDMPK-----TIDDYVHRIGRTGRVGNN 503


>gi|167946991|ref|ZP_02534065.1| putative ATP-dependent DNA helicase RecG [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 209

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 7/92 (7%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTE L E  + V  +H  +K+ E+ +I+   + G+ D+LV   ++  G+D+P   L+ I 
Sbjct: 87  LTETLPE--LEVGLVHGRIKSDEKEQIMARFKAGEIDLLVATTVIEVGVDVPNASLMIIE 144

Query: 658 DADKEGFLRSKTSLIQTIGRAAR-NVNSKVIL 688
           + ++ G       L Q  GR  R +V+S  +L
Sbjct: 145 NPERLGL----AQLHQLRGRVGRGSVDSHCVL 172


>gi|167538349|ref|XP_001750839.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163770660|gb|EDQ84343.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1758

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+  +++  + G+++VLV   +  EGLDI +  L+     D++G   S+T L+Q  GR  
Sbjct: 589 EQARVLQQFKNGQYNVLVATCVAEEGLDIGDVDLIVCY--DQQG---SQTRLVQRSGRTG 643

Query: 680 RNVNSKVIL 688
           R  + K++ 
Sbjct: 644 RKRDGKIVF 652


>gi|145234506|ref|XP_001400624.1| ATP-dependent RNA helicase dbp3 [Aspergillus niger CBS 513.88]
 gi|134034068|sp|A2QFL3|DBP3_ASPNC RecName: Full=ATP-dependent RNA helicase dbp3
 gi|134057571|emb|CAK37981.1| unnamed protein product [Aspergillus niger]
          Length = 495

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 36/71 (50%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+  L K+ A  +   L+ +  +V  +H ++   ER + +   + G   VLV  ++  
Sbjct: 332 KILVFCLYKKEAVRVERLLWNKGFKVAGIHGDLGQQERFKSLESFKKGVSTVLVATDVAA 391

Query: 644 EGLDIPECGLV 654
            GLDIP   LV
Sbjct: 392 RGLDIPSVKLV 402


>gi|119475746|ref|ZP_01616099.1| probable ATP-dependent RNA helicase [marine gamma proteobacterium
           HTCC2143]
 gi|119451949|gb|EAW33182.1| probable ATP-dependent RNA helicase [marine gamma proteobacterium
           HTCC2143]
          Length = 451

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 23/158 (14%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
           P  I V  +P     + CQ +++   I+                 VE + DE     +Q 
Sbjct: 203 PVAIAV-GSPDHQHQDICQQLVLADTIK------------HKEKLVEALIDE-----EQA 244

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + L+   T+   + L+  L  + ++V Y+H ++   +R +++   R G   VLV  ++ 
Sbjct: 245 QKTLVFCNTRVQCQQLSHLLRYKKMKVGYIHGDISQNDRKQVMNQFRQGGIAVLVATDVA 304

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             GLDI    LV   +  + G        +  +GR  R
Sbjct: 305 ARGLDIKGVDLVVNFNIAQSG-----DDHLHRVGRTGR 337


>gi|73542491|ref|YP_297011.1| ATP-dependent DNA helicase RecG [Ralstonia eutropha JMP134]
 gi|72119904|gb|AAZ62167.1| ATP-dependent DNA helicase RecG [Ralstonia eutropha JMP134]
          Length = 728

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++RV  +H  +   E+  ++ D    +  VLV   ++  G+D+P   L+ I  A++ G  
Sbjct: 552 DLRVGLVHGRLPPAEKASVMDDFSANRLQVLVATTVIEVGVDVPNASLMVIEHAERFGL- 610

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
                L Q  GR  R     V L
Sbjct: 611 ---AQLHQLRGRVGRGTAESVCL 630


>gi|109900519|ref|YP_663774.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas atlantica T6c]
 gi|122971428|sp|Q15N18|RHLB_PSEA6 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|109702800|gb|ABG42720.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 421

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   E + ++L     RV  +  +V   +R++I+ D   GK D+LV  ++   GL IP 
Sbjct: 262 TKHSCEKVADWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDILVATDVAARGLHIPM 321

Query: 651 CGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
              V   D   D E +       +  IGR  R
Sbjct: 322 VSHVFNYDLPDDAEDY-------VHRIGRTGR 346


>gi|239610645|gb|EEQ87632.1| RecQ family helicase MusN [Ajellomyces dermatitidis ER-3]
 gi|327348921|gb|EGE77778.1| RecQ family helicase MusN [Ajellomyces dermatitidis ATCC 18188]
          Length = 1562

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 14/142 (9%)

Query: 582  GLRILLTVLTKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            G   ++  L+++  E + E L +   I+  + H+ + + +RI I RD + GK++V+V   
Sbjct: 921  GKAGIIYCLSRQSCERVAEQLRDTHKIKAVHYHAGLPSNDRISIQRDWQRGKYNVIVATI 980

Query: 641  LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV--NSKVILYADTITKSIQ 698
                G+D P+   V           +S     Q  GRA R+   +   + Y    T SI+
Sbjct: 981  AFGMGIDKPDVRFVI-----HHSMPKSLEGYYQETGRAGRDGERSGCYLYYGFQDTASIR 1035

Query: 699  LAID------ETTRRREKQLEH 714
              ID      E   R+ + L H
Sbjct: 1036 HMIDKGEGSSEQKSRQHRMLRH 1057


>gi|229586940|ref|YP_002845441.1| Transcription-repair coupling factor [Rickettsia africae ESF-5]
 gi|228021990|gb|ACP53698.1| Transcription-repair coupling factor [Rickettsia africae ESF-5]
          Length = 1122

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 82/187 (43%), Gaps = 23/187 (12%)

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYV 238
           FT+    + +++  I+ A N+  A QLY +   F  +  + YF SY    YD+  P A +
Sbjct: 14  FTIDNFTKNLKQDFILSASNEEEALQLYKQALFFSSNENIYYFPSYNTIPYDHTSPNANI 73

Query: 239 P--RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
              R +T I K ++ N   +++  + T +LL +              +   + +S+  ++
Sbjct: 74  LSRRAETLI-KLTTNNSNSNKLLITHTANLLNK--------------LPPKDFFSKYFLK 118

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L         EL   LV+  + R    I  G F V G+ I+I  S  +  A+R+      
Sbjct: 119 LSPKMKFTTDELAMFLVENSFTRNASSIDVGEFAVRGEIIDIILSGPK--AYRIHFSWGY 176

Query: 357 IEEISEF 363
           IE I EF
Sbjct: 177 IESIKEF 183



 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           E++ +   GKFD+LV   ++  G+DI E   + I +AD  G     + L Q  GR  R
Sbjct: 834 EVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGL----SQLYQLRGRIGR 887


>gi|73670114|ref|YP_306129.1| DNA repair helicase RAD25 [Methanosarcina barkeri str. Fusaro]
 gi|72397276|gb|AAZ71549.1| DNA repair helicase RAD25 [Methanosarcina barkeri str. Fusaro]
          Length = 491

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  I+   + GK+  +V   +L EG+D+PE  +  I          SK + IQ +GR  
Sbjct: 367 ERNSILEKFKEGKYRAVVTSKVLDEGIDVPEANIGIIASGTG-----SKLAYIQRLGRIL 421

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           R    K  +  + IT+    A   T RRR+K +   K    + Q
Sbjct: 422 RKKEGKEAILYEIITEETTEA--GTARRRKKAVSTRKDFGKSAQ 463


>gi|120554850|ref|YP_959201.1| transcription-repair coupling factor [Marinobacter aquaeolei VT8]
 gi|120324699|gb|ABM19014.1| transcription-repair coupling factor [Marinobacter aquaeolei VT8]
          Length = 1173

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AEDL + + E   RV   H +++  +  +I+ D    +F+VLV   ++  G+DIP  
Sbjct: 844 EKTAEDLRKLIPE--ARVGVAHGQMRERQLEQIMSDFYHKRFNVLVCTTIVETGIDIPSA 901

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 902 NTIIIERADKFGL----AQLHQLRGRVGRS 927


>gi|150390547|ref|YP_001320596.1| primosomal protein N' [Alkaliphilus metalliredigens QYMF]
 gi|149950409|gb|ABR48937.1| primosomal protein N' [Alkaliphilus metalliredigens QYMF]
          Length = 829

 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK----EGFLRSKTS---LIQTIG 676
           I+   + G+ D+L+G  ++ +GLD P   LV I+ AD       F  S+ +   + Q  G
Sbjct: 614 ILERFKKGEIDILIGTQMIAKGLDFPNVTLVGIVSADMMLNFPDFRASEKTFQLITQVAG 673

Query: 677 RAARNVNSKVIL 688
           RA R ++  V++
Sbjct: 674 RAGRGLDPGVVI 685



 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEF 213
           I QL+K    R +  LL G+TGSGKT    ++IE    M +  IV+ P  +L  Q    F
Sbjct: 294 ITQLIK--QERRQNYLLHGITGSGKTEIYLQLIEEVNRMGKQGIVLVPEIVLTPQTIERF 351

Query: 214 KNFF 217
           K  F
Sbjct: 352 KGRF 355


>gi|332877622|ref|ZP_08445366.1| primosomal protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684471|gb|EGJ57324.1| primosomal protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 815

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +I+ D    +  +LVG  ++ +GLD    GLV +++AD          + RS   L+Q  
Sbjct: 608 KILSDFEQQETQILVGTQMITKGLDFTNVGLVGVMNADAAIHSPDYRAYERSFQLLMQVS 667

Query: 676 GRAARNVNSKVIL 688
           GRA R+     +L
Sbjct: 668 GRAGRSAQQGRVL 680


>gi|326502382|dbj|BAJ95254.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 412

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R
Sbjct: 271 DLYDTLTIT-----QAVIFCNTKRKVDWLTERMRTNNFTVSAMHGDMPQKERDAIMNEFR 325

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 326 GGTTRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 371


>gi|300917885|ref|ZP_07134518.1| transcription-repair coupling factor [Escherichia coli MS 115-1]
 gi|300414875|gb|EFJ98185.1| transcription-repair coupling factor [Escherichia coli MS 115-1]
          Length = 1164

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       +P P LF
Sbjct: 247 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSDPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|298368676|ref|ZP_06979994.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282679|gb|EFI24166.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 443

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P 
Sbjct: 255 TKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPT 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              V   D  K+         +  IGR  R
Sbjct: 315 ITHVINYDLPKQA-----EDYVHRIGRTGR 339


>gi|294783698|ref|ZP_06749022.1| helicase [Fusobacterium sp. 1_1_41FAA]
 gi|294480576|gb|EFG28353.1| helicase [Fusobacterium sp. 1_1_41FAA]
          Length = 942

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           + L  L+ V     A+ L E   E+ ++   + SE    ER E IR L  G+ + ++ ++
Sbjct: 434 EKLHCLVFVSKVEEAKILVEKFLEQGVKALALSSENSDNEREEAIRKLEEGEIEYIISVD 493

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTS---LIQTIGRAAR 680
           +  EG+DIP C    IL       LR  TS    IQ +GR  R
Sbjct: 494 IFNEGVDIP-CVNQVIL-------LRPTTSAIVYIQQLGRGLR 528


>gi|261492178|ref|ZP_05988748.1| helicase RecG [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261312158|gb|EEY13291.1| helicase RecG [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 693

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL   L   ++R+  +H  +K  E+  I+ + +    D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLQRAL--PDLRIGLVHGRLKPQEKQAIMAEFKAANLDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I ++++ G       L Q  GR  R   +   V++Y   + K
Sbjct: 567 IENSERLGL----AQLHQLRGRVGRGATASHCVLMYKPPLGK 604


>gi|257420441|ref|ZP_05597431.1| ATP-dependent DNA helicase recG [Enterococcus faecalis X98]
 gi|257162265|gb|EEU92225.1| ATP-dependent DNA helicase recG [Enterococcus faecalis X98]
 gi|315154698|gb|EFT98714.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0043]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 521 LRPTTIVVSATPGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYD 573
           L+P  + ++ATP    L      E    II E    P G +  P+E R  R  Q++ V +
Sbjct: 400 LKPDVLFMTATPIPRTLAITAYGEMDVSIIDEM---PAGRI--PIETRWIRPPQLDTVLE 454

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDL---------TEYLYERNIRVRYMHSEVKTLERI 622
             E  LA      I+  ++ +  A D+          +  Y    +V  +H ++K  E+ 
Sbjct: 455 WMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKD 514

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+++ +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  GR  R  
Sbjct: 515 DIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLRGRVGRGS 570

Query: 683 N-SKVILYAD 691
           + S  IL A+
Sbjct: 571 SASYCILVAN 580


>gi|256960459|ref|ZP_05564630.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis Merz96]
 gi|293385117|ref|ZP_06630943.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis R712]
 gi|312906699|ref|ZP_07765699.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DAPTO 512]
 gi|312910839|ref|ZP_07769675.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DAPTO 516]
 gi|256950955|gb|EEU67587.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis Merz96]
 gi|291077594|gb|EFE14958.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis R712]
 gi|310627347|gb|EFQ10630.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DAPTO 512]
 gi|311288862|gb|EFQ67418.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DAPTO 516]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 521 LRPTTIVVSATPGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYD 573
           L+P  + ++ATP    L      E    II E    P G +  P+E R  R  Q++ V +
Sbjct: 400 LKPDVLFMTATPIPRTLAITAYGEMDVSIIDEM---PAGRI--PIETRWIRPPQLDTVLE 454

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDL---------TEYLYERNIRVRYMHSEVKTLERI 622
             E  LA      I+  ++ +  A D+          +  Y    +V  +H ++K  E+ 
Sbjct: 455 WMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKD 514

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+++ +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  GR  R  
Sbjct: 515 DIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLRGRVGRGS 570

Query: 683 N-SKVILYAD 691
           + S  IL A+
Sbjct: 571 SASYCILVAN 580


>gi|284038918|ref|YP_003388848.1| primosomal protein N' [Spirosoma linguale DSM 74]
 gi|283818211|gb|ADB40049.1| primosomal protein N' [Spirosoma linguale DSM 74]
          Length = 804

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II++   G+ D+LVG  ++ +GLD     LV I DAD+           R+   + Q  
Sbjct: 595 QIIQEFEGGQVDILVGTQMITKGLDFDNVSLVGIFDADRLIHFPDFRATERAFQMITQVS 654

Query: 676 GRAAR 680
           GRA R
Sbjct: 655 GRAGR 659


>gi|254975780|ref|ZP_05272252.1| ATP-dependent RNA helicase [Clostridium difficile QCD-66c26]
 gi|255650694|ref|ZP_05397596.1| ATP-dependent RNA helicase [Clostridium difficile QCD-37x79]
 gi|260687441|ref|YP_003218575.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|260213458|emb|CBE05139.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 497

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 9/102 (8%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK     L   + +    +R +H+++    RI +I+D +  KF++LV  ++   
Sbjct: 248 VIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILVSSDVASR 307

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNS 684
           G+ I +  LV   D   DKE +       I  IGR  R  NS
Sbjct: 308 GIHIDDISLVINYDVPQDKENY-------IHRIGRTGRKGNS 342


>gi|225557690|gb|EEH05975.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus G186AR]
          Length = 487

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 35/71 (49%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+  L K+ A  +  ++  +  +V  +H ++   ER   +   + G   VLV  ++  
Sbjct: 324 KVLVFCLYKKEATRIERFIRSKGFKVAGIHGDMNQTERFNSLNAFKSGSVPVLVATDVAA 383

Query: 644 EGLDIPECGLV 654
            GLDIP   LV
Sbjct: 384 RGLDIPAVKLV 394


>gi|225464928|ref|XP_002275011.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 412

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R
Sbjct: 271 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFR 325

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 326 SGTTRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 371


>gi|224282806|ref|ZP_03646128.1| transcription-repair coupling factor [Bifidobacterium bifidum NCIMB
           41171]
 gi|313139965|ref|ZP_07802158.1| transcription-repair coupling factor [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132475|gb|EFR50092.1| transcription-repair coupling factor [Bifidobacterium bifidum NCIMB
           41171]
          Length = 1199

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 280 CIYGIGSVES--YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            + G+G V+   ++Q       G+ +   ++   LV+  Y R D+ + RG F V G  I+
Sbjct: 170 VVKGLGDVDPLVFTQ-------GEELPLDDVSRRLVENAYTRVDLVMDRGEFAVRGGIID 222

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFY 364
           +FP        R+  FG++I+ I EF+
Sbjct: 223 VFPPTAPHPV-RIEFFGDEIDSIREFH 248


>gi|219521150|gb|AAI72016.1| Ddx3x protein [Mus musculus]
          Length = 661

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 432 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 490

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 491 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 549

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 550 ---NITKDL 555


>gi|145636800|ref|ZP_01792466.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           PittHH]
 gi|145270098|gb|EDK10035.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           PittHH]
          Length = 693

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+ L   NI +  +H  +K  E+ +++   +  + D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLTKALPMLNIGL--VHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           I +A++ G     + L Q  GR  R   +   V++Y   + K  Q
Sbjct: 567 IENAERLGL----SQLHQLRGRVGRGRTASFCVLMYKPPLGKVSQ 607


>gi|119469744|ref|ZP_01612613.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Alteromonadales bacterium TW-7]
 gi|119446991|gb|EAW28262.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Alteromonadales bacterium TW-7]
          Length = 435

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V  K+  E L   L +R I  +  H +    ER  +I   + G+ +VL+  ++   G
Sbjct: 259 LIFVNAKKDCEHLAGKLEKRGINAQVFHGDKGQSERTRVIEKFKAGEIEVLIATDIAARG 318

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDI +  +V   +       RS    +  IGR+ R
Sbjct: 319 LDIAKLPVVINFN-----LPRSPADYMHRIGRSGR 348


>gi|114705391|ref|ZP_01438299.1| DEAD/DEAH box helicase [Fulvimarina pelagi HTCC2506]
 gi|114540176|gb|EAU43296.1| DEAD/DEAH box helicase [Fulvimarina pelagi HTCC2506]
          Length = 587

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 3/104 (2%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  +VE     +   A+Q   I+    T+     L+  L ER      +  E+   E
Sbjct: 223 VRIAPNEVEHAVTNVLRHAEQPSAIVFCN-TRETVRHLSSGLIERGFAAVTLSGELGQAE 281

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV--AILDADKE 662
           R + I+ LR G+  V V  ++   GLD+P  GLV  A L +D E
Sbjct: 282 RNQAIQALRDGRARVCVATDVAARGLDLPSLGLVIHADLPSDAE 325


>gi|29377569|ref|NP_816723.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis V583]
 gi|227554533|ref|ZP_03984580.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis HH22]
 gi|256962943|ref|ZP_05567114.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis HIP11704]
 gi|257083222|ref|ZP_05577583.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis Fly1]
 gi|257088220|ref|ZP_05582581.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis D6]
 gi|257417957|ref|ZP_05594951.1| ATP-dependent DNA helicase recG [Enterococcus faecalis T11]
 gi|307273601|ref|ZP_07554829.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0855]
 gi|29345036|gb|AAO82793.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis V583]
 gi|227176331|gb|EEI57303.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis HH22]
 gi|256953439|gb|EEU70071.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis HIP11704]
 gi|256991252|gb|EEU78554.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis Fly1]
 gi|256996250|gb|EEU83552.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis D6]
 gi|257159785|gb|EEU89745.1| ATP-dependent DNA helicase recG [Enterococcus faecalis T11]
 gi|306509614|gb|EFM78656.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0855]
 gi|315026444|gb|EFT38376.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX2137]
 gi|315171209|gb|EFU15226.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1342]
 gi|315573261|gb|EFU85452.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0309B]
 gi|315581165|gb|EFU93356.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0309A]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 521 LRPTTIVVSATPGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYD 573
           L+P  + ++ATP    L      E    II E    P G +  P+E R  R  Q++ V +
Sbjct: 400 LKPDVLFMTATPIPRTLAITAYGEMDVSIIDEM---PAGRI--PIETRWIRPPQLDTVLE 454

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDL---------TEYLYERNIRVRYMHSEVKTLERI 622
             E  LA      I+  ++ +  A D+          +  Y    +V  +H ++K  E+ 
Sbjct: 455 WMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKD 514

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+++ +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  GR  R  
Sbjct: 515 DIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLRGRVGRGS 570

Query: 683 N-SKVILYAD 691
           + S  IL A+
Sbjct: 571 SASYCILVAN 580


>gi|117926052|ref|YP_866669.1| type III restriction enzyme, res subunit [Magnetococcus sp. MC-1]
 gi|117609808|gb|ABK45263.1| type III restriction enzyme, res subunit [Magnetococcus sp. MC-1]
          Length = 560

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A+++T+     ++    +H E+ T ER   +     G   V+V + +L EG D P    V
Sbjct: 249 AQNVTDAFNNADVEAVMVHGELSTGERKAALARFEKGSAMVVVNVAVLTEGYDHPPTSCV 308

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +L          K+++IQ +GR  R V+
Sbjct: 309 VLLRPSS-----YKSTMIQMVGRGLRTVD 332


>gi|300214981|gb|ADJ79397.1| Transcription-repair coupling factor [Lactobacillus salivarius CECT
           5713]
          Length = 908

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V Y+H  +   +   I+ D   G++DVLV   ++  G+DIP    + + +AD+ G    
Sbjct: 590 KVAYIHGRMTETQLENILIDFIDGEYDVLVTTTIIETGVDIPNVNTLFVDNADRMGL--- 646

Query: 668 KTSLIQTIGRAARNVNSKVILYA 690
            + L Q  GR  R   S  I YA
Sbjct: 647 -SQLYQLRGRVGR---SNRIAYA 665


>gi|269837932|ref|YP_003320160.1| ATP-dependent DNA helicase RecG [Sphaerobacter thermophilus DSM
           20745]
 gi|269787195|gb|ACZ39338.1| ATP-dependent DNA helicase RecG [Sphaerobacter thermophilus DSM
           20745]
          Length = 824

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 5/94 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H  ++  E+  I+   R  + D+LV  +++  G+D+P   ++ I  AD+ G  
Sbjct: 644 DLRLGLLHGRMRPAEKDAIMTAFRDHEIDILVSTSVVEVGIDVPNATVMLIEGADRFGL- 702

Query: 666 RSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQ 698
                L Q  GR  R     V IL AD +++  Q
Sbjct: 703 ---AQLHQFRGRVGRGAARSVCILVADDVSEEGQ 733


>gi|238925630|ref|YP_002939147.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC
           33656]
 gi|238877306|gb|ACR77013.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC
           33656]
 gi|291524137|emb|CBK89724.1| Superfamily II DNA and RNA helicases [Eubacterium rectale DSM
           17629]
 gi|291527820|emb|CBK93406.1| Superfamily II DNA and RNA helicases [Eubacterium rectale M104/1]
          Length = 530

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+   TK+M ++L   L  R      +H ++K ++R  ++++ R GK D+L+  ++   G
Sbjct: 247 LVFCNTKKMVDELAYELCGRGYSAEGLHGDMKQVQRDRVMKNFRNGKTDILIATDVAARG 306

Query: 646 LDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
           +D+ +   V   D   D E ++      I   GRA R
Sbjct: 307 IDVDDVEAVFNYDLPQDDEYYVHR----IGRTGRAGR 339


>gi|229547467|ref|ZP_04436192.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1322]
 gi|256854780|ref|ZP_05560144.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T8]
 gi|229307391|gb|EEN73378.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1322]
 gi|256710340|gb|EEU25384.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T8]
 gi|315028368|gb|EFT40300.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX4000]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 521 LRPTTIVVSATPGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYD 573
           L+P  + ++ATP    L      E    II E    P G +  P+E R  R  Q++ V +
Sbjct: 400 LKPDVLFMTATPIPRTLAITAYGEMDVSIIDEM---PAGRI--PIETRWIRPPQLDTVLE 454

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDL---------TEYLYERNIRVRYMHSEVKTLERI 622
             E  LA      I+  ++ +  A D+          +  Y    +V  +H ++K  E+ 
Sbjct: 455 WMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKD 514

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+++ +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  GR  R  
Sbjct: 515 DIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLRGRVGRGS 570

Query: 683 N-SKVILYAD 691
           + S  IL A+
Sbjct: 571 SASYCILVAN 580


>gi|254491679|ref|ZP_05104858.1| transcription-repair coupling factor [Methylophaga thiooxidans
           DMS010]
 gi|224463157|gb|EEF79427.1| transcription-repair coupling factor [Methylophaga thiooxydans
           DMS010]
          Length = 1101

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L++GD  + ++    L K  Y+     +  G F V G  I+++P     + +R+ +F 
Sbjct: 83  LMLEVGDQFDIEQWRMRLEKAGYRNVSQVMEHGEFTVRGAIIDLYPMG-SKLPYRIDLFD 141

Query: 355 NDIEEISEFYPLTGQKIRNVETIKI 379
           ++I+ +  F P T + I N++TI++
Sbjct: 142 DEIDTLRTFDPETQRSIENIDTIRL 166



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R+A ++   + E  + V   H +++  E  +++ D    +F+VLV   ++  G+D+P  
Sbjct: 779 ERVAREIEAIMPEAKVAV--AHGQMRERELEQVMLDFYHQRFNVLVCTTIIETGIDVPSA 836

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             + I  ADK G       L Q  GR  R+ +     YA  IT   ++   +  +R E
Sbjct: 837 NTIFIDRADKLGL----AQLYQIRGRVGRSHHRA---YAYLITPPQKVMTKDAVKRLE 887


>gi|195995859|ref|XP_002107798.1| hypothetical protein TRIADDRAFT_51673 [Trichoplax adhaerens]
 gi|190588574|gb|EDV28596.1| hypothetical protein TRIADDRAFT_51673 [Trichoplax adhaerens]
          Length = 1418

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ E++   R  K+++LV  N+L EG+D+ EC +V   D      +   +S +Q+ GRA 
Sbjct: 469 EQEEVMNRFRRHKYNLLVATNVLEEGVDVSECNVVIRFDR-----VNHFSSYLQSRGRAR 523

Query: 680 RNVNSKVIL 688
            + +S V++
Sbjct: 524 ADDSSYVLM 532


>gi|50120752|ref|YP_049919.1| transcription-repair coupling factor [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611278|emb|CAG74725.1| transcription-repair coupling factor [Pectobacterium atrosepticum
           SCRI1043]
          Length = 1149

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 127/309 (41%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV---EYFV 226
           Q LLG +TG+      A++IE      +++AP+   A +L  E + F   +     ++  
Sbjct: 16  QRLLGELTGAACAVECAEIIERHAGLVVLIAPDMQNALRLRDEIQQFTNQHVTTLPDWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M          +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQEI------ISTRLSTLYQLPNMTRGVLILPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         LK G  + + +L S L +  Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------LKKGQRLSRDKLRSQLEQAGYRSVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E+  +R+  F ++I+ +  F   T + +  V  I +     +    PT  TA++  + +
Sbjct: 176 SEE-PYRIDFFDDEIDSLRLFDVDTQRTLNEVPHINLLPAHEF----PTDKTAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            + +  E+ +     +A+ + Q+++  +           IE +          EP P+LF
Sbjct: 231 WREQF-EVRR-----DAEHIYQQVSKGV-------WPAGIEYWQPLFF----SEPLPSLF 273

Query: 463 EYIPEDSLL 471
            Y P ++L+
Sbjct: 274 SYFPSNTLI 282


>gi|88811449|ref|ZP_01126704.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231]
 gi|88791338|gb|EAR22450.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231]
          Length = 437

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q   R L+ V TKR AE +T YL         +  ++   +R ++++  + GK  +LV  
Sbjct: 252 QDATRTLVFVNTKRDAERVTAYLVGNGFDAEVISGDIPQKKREQLLQRFQEGKLPMLVAT 311

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++   GL IP+   +   D       ++    +  IGR AR
Sbjct: 312 DVAARGLHIPDVSRIVNYD-----LPQNAEDYVHRIGRTAR 347


>gi|77408110|ref|ZP_00784857.1| competence protein F [Streptococcus agalactiae COH1]
 gi|77173294|gb|EAO76416.1| competence protein F [Streptococcus agalactiae COH1]
          Length = 429

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           K+  R+++++D R  K  +LV   +L  G+  P    V ++ A+   F  +K+SL+Q  G
Sbjct: 333 KSTSRLKLVQDFRDNKLSILVSTTILERGVTFPSVD-VFVIQANHHLF--TKSSLVQISG 389

Query: 677 RAARNVN-SKVILY--ADTITKSIQLAIDE 703
           R  R +   + +LY   D  +KS+  AI E
Sbjct: 390 RVGRALERPEGLLYFLHDGKSKSMHQAIKE 419


>gi|315146597|gb|EFT90613.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX4244]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 521 LRPTTIVVSATPGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYD 573
           L+P  + ++ATP    L      E    II E    P G +  P+E R  R  Q++ V +
Sbjct: 400 LKPDVLFMTATPIPRTLAITAYGEMDVSIIDEM---PAGRI--PIETRWIRPPQLDTVLE 454

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDL---------TEYLYERNIRVRYMHSEVKTLERI 622
             E  LA      I+  ++ +  A D+          +  Y    +V  +H ++K  E+ 
Sbjct: 455 WMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKD 514

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+++ +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  GR  R  
Sbjct: 515 DIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLRGRVGRGS 570

Query: 683 N-SKVILYAD 691
           + S  IL A+
Sbjct: 571 SASYCILVAN 580


>gi|313124094|ref|YP_004034353.1| replication restart DNA helicase pria [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280657|gb|ADQ61376.1| Replication restart DNA helicase PriA [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 793

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 15/106 (14%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINL 641
            L   T+++ E+L E   +  I    +  +V T  R     +I+     G+ D+L+G  +
Sbjct: 549 FLGTGTQKVQEELAELFPQAKI----LRMDVDTTRRKGSYDKILTSFGQGEADILLGTQM 604

Query: 642 LREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           + +GLD P   LV +++AD   +L       R+   L Q  GRA R
Sbjct: 605 IAKGLDFPNVTLVGVINADTGLWLPDYNASERTFELLTQVAGRAGR 650


>gi|307191879|gb|EFN75298.1| Probable ATP-dependent RNA helicase DDX5 [Harpegnathos saltator]
          Length = 627

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 12/140 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  +D+T  +     +   +H +    ER  ++++ R G+  +LV  ++  
Sbjct: 374 KTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQERDHVLQEFRSGRAPILVATDVAA 433

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLD+ +   V   D     +  S    I  IGR  R   +    YA   + +++ A D 
Sbjct: 434 RGLDVDDVKYVINFD-----YPSSSEDYIHRIGRTGRRRQTGT-AYAFFTSHNMKHAGDL 487

Query: 704 TTRRREKQLEHNKKHNINPQ 723
               RE         N+NP+
Sbjct: 488 IEVLRE------AGQNVNPR 501


>gi|261494245|ref|ZP_05990744.1| helicase RecG [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310097|gb|EEY11301.1| helicase RecG [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 693

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL   L   ++R+  +H  +K  E+  I+ + +    D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLQRAL--PDLRIGLVHGRLKPQEKQAIMAEFKAANLDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I ++++ G       L Q  GR  R   +   V++Y   + K
Sbjct: 567 IENSERLGL----AQLHQLRGRVGRGATASHCVLMYKPPLGK 604


>gi|323340706|ref|ZP_08080958.1| primosome assembly protein PriA [Lactobacillus ruminis ATCC 25644]
 gi|323091829|gb|EFZ34449.1| primosome assembly protein PriA [Lactobacillus ruminis ATCC 25644]
          Length = 810

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 18/102 (17%)

Query: 629 RLGKF--DVLVGINLLREGLDIPECGLVAILDADKE-GFLRSKTS------LIQTIGRAA 679
           R G+   D+L+G  ++ +GLD P+  LV +L+AD   G    ++S      L Q  GRA 
Sbjct: 607 RFGRHEADILLGTQMIAKGLDFPDVTLVGVLNADTALGLPDFRSSEKTFQLLTQVSGRAG 666

Query: 680 R-NVNSKVILYADTITK---SIQLAIDETTRR---REKQLEH 714
           R + N +V++   T  K   +IQLA  +   R    E QL H
Sbjct: 667 RADKNGEVVI--QTFNKEHYAIQLACTQEYERFYAYEMQLRH 706


>gi|261400653|ref|ZP_05986778.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
           protein [Neisseria lactamica ATCC 23970]
 gi|269209560|gb|EEZ76015.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
           protein [Neisseria lactamica ATCC 23970]
          Length = 1741

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 7/131 (5%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  Q+G  ++  V  ++ AED  EYL ++     Y H+ ++T  + +I      G   V+
Sbjct: 522 LDHQRGGAVVF-VGRRKSAEDYNEYLQKQGWACEYFHAGLETNAKADIQNRFIEGGLRVI 580

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITK 695
           V  N    G+D P+  LV  + A+  G L    + +Q  GRA R+   +K IL  +    
Sbjct: 581 VATNAFGMGVDKPDVRLV--IHAEITGSLE---NYLQEAGRAGRDREEAKCILLYEKSDV 635

Query: 696 SIQLAIDETTR 706
             Q  I + ++
Sbjct: 636 DTQFGISKMSQ 646


>gi|222152152|ref|YP_002561312.1| transcription-repair coupling factor [Macrococcus caseolyticus
           JCSC5402]
 gi|222121281|dbj|BAH18616.1| transcription-repair coupling factor [Macrococcus caseolyticus
           JCSC5402]
          Length = 1166

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 92/220 (41%), Gaps = 24/220 (10%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           L+ G+  S K   +A+     Q+  +V+  N   A +L  +         V  F      
Sbjct: 28  LITGLNPSAKAMMLAESYMHHQKQMVVVTSNLYQAERLERDLIQLVDEEDVFKF------ 81

Query: 232 YQPEAYVPRTDTYIEKESS-----INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
                  P  D  IE+ S+     + E+I  + H A      +N   ++        I  
Sbjct: 82  -------PVQDIMIEEFSTKSPDLMQERIRTLTHLAKG----QNGLFLIPVNGLEKLISK 130

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            E++ +  +++ +G  V+  EL  SL+   Y++ +     G F V G  I+I+P   E V
Sbjct: 131 KETFLRYHLEIMLGIDVDLSELQQSLIDMGYQKTERVTTLGEFSVRGGLIDIYPMIGEPV 190

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
             R+ +F  +++ I  F   + + + N++ +++   S ++
Sbjct: 191 --RIELFDTEVDSIRAFDIDSQRSLHNIDKVELSTASEFI 228


>gi|223997764|ref|XP_002288555.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975663|gb|EED93991.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 369

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + L   + E N  V  MH ++   ER +++ D R
Sbjct: 228 DLYDTLTVT-----QAVIFCNTKQKVDWLATKMRESNFTVAAMHGDMTQDERDKVMEDFR 282

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  +L   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 283 SGSSRVLIATDLWGRGIDVQQVSLVICYDLPT-----NRELYIHRIGRSGR 328


>gi|194365003|ref|YP_002027613.1| DEAD/DEAH box helicase domain-containing protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194347807|gb|ACF50930.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 646

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 10/141 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L   L  R +    ++ +++  +R   I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  + + IL+A    K +   I+
Sbjct: 311 GLDVERISHVLNYDIPYDTESYVHR----IGRTGRAGR--SGEAILFATPREKGMLRQIE 364

Query: 703 ETTRR--REKQLEHNKKHNIN 721
             TR+   E QL   +  N N
Sbjct: 365 RATRQPIEEMQLPSVEAVNDN 385


>gi|70729336|ref|YP_259073.1| transcription-repair coupling factor [Pseudomonas fluorescens Pf-5]
 gi|68343635|gb|AAY91241.1| transcription-repair coupling factor [Pseudomonas fluorescens Pf-5]
          Length = 1149

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 58/311 (18%), Positives = 120/311 (38%), Gaps = 63/311 (20%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+   A +R  +++  +   A +L  E   F P   V +F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSADRLEQELSFFAPDLPVLHFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P       D   ++ +S+  ++  + H            +VV   + ++ +   +   
Sbjct: 81  FSPH-----QDIISQRIASLY-RLPELEHG----------VLVVPITTALHRLAPTQFLL 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L +G  ++ +++ + L    Y+  D     G F V G  I++FP     + +R+ 
Sbjct: 125 GSSLVLDVGQKLDVEQMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPYRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +  F P   + I  V+++++                       L  +   L+
Sbjct: 184 LFDDEIETLRTFDPENQRSIDKVDSVRL-----------------------LPAKEFPLQ 220

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG----------EPPPTL 461
           KE       R  +R   D         C   ++ S   +G  P           E   TL
Sbjct: 221 KEAVTRFKARFRERFDVDFR------RCPIFQDLS---SGITPAGIEYYLPLFFEETSTL 271

Query: 462 FEYIPEDSLLF 472
           F+Y+P+D+ +F
Sbjct: 272 FDYLPQDTQVF 282



 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 13/122 (10%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VL+   ++  G+D+P  
Sbjct: 825 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 882

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
             + I  ADK G       L Q  GR  R+ +     YA  +T   Q    + T   EK+
Sbjct: 883 NTIIIERADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPPRQ----QITPDAEKR 931

Query: 712 LE 713
           LE
Sbjct: 932 LE 933


>gi|54310595|ref|YP_131615.1| ATP-dependent RNA helicase RhlB [Photobacterium profundum SS9]
 gi|56749602|sp|Q6LLL5|RHLB_PHOPR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|46915038|emb|CAG21813.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Photobacterium
           profundum SS9]
          Length = 437

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   ED+  +L   N RV  ++ +V   +R+ I+     G  D+LV  ++  
Sbjct: 258 RAIIFANTKHRCEDIWGHLAADNHRVGLLNGDVPQKKRVRILEQFTQGDIDILVATDVAA 317

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            GL IP+   V   D   D E +       +  IGR  R
Sbjct: 318 RGLHIPQVTHVYNYDLPDDAEDY-------VHRIGRTGR 349


>gi|6753620|ref|NP_034158.1| ATP-dependent RNA helicase DDX3X [Mus musculus]
 gi|2500528|sp|Q62167|DDX3X_MOUSE RecName: Full=ATP-dependent RNA helicase DDX3X; AltName:
           Full=D1Pas1-related sequence 2; AltName: Full=DEAD box
           RNA helicase DEAD3; Short=mDEAD3; AltName: Full=DEAD box
           protein 3, X-chromosomal; AltName: Full=Embryonic RNA
           helicase
 gi|407996|gb|AAA53630.1| RNA helicase [Mus musculus]
 gi|1835122|emb|CAA86261.1| dead-box RNA helicase [Mus musculus]
 gi|74187753|dbj|BAE24540.1| unnamed protein product [Mus musculus]
 gi|74190343|dbj|BAE37257.1| unnamed protein product [Mus musculus]
 gi|123858229|emb|CAM15722.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Mus
           musculus]
 gi|1098036|prf||2115205A RNA helicase
          Length = 662

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 433 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 550

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 551 ---NITKDL 556


>gi|332535929|ref|ZP_08411636.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034692|gb|EGI71243.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 422

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V  K+  E L   L +R +  +  H +    ER  +I   + G+ +VL+  ++  
Sbjct: 257 QVLIFVNAKKDCEHLAAKLEKRGVNAQVFHGDKGQSERTRVIEKFKAGEIEVLIATDIAA 316

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLDI +  +V   +       RS    +  IGR+ R
Sbjct: 317 RGLDIEKLPVVINFN-----LPRSPADYMHRIGRSGR 348


>gi|323698290|ref|ZP_08110202.1| primosomal protein N' [Desulfovibrio sp. ND132]
 gi|323458222|gb|EGB14087.1| primosomal protein N' [Desulfovibrio desulfuricans ND132]
          Length = 793

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKT---FTMAKVIEAMQRPAIVMAPNKILAAQ 208
           +Q  A+ ++ + +       L+ GVTGSGKT     MA+ +    R  + +AP   LA Q
Sbjct: 260 EQRTALDEMTETMERGGGAHLVHGVTGSGKTVLYMEMARRLLERGRSVLFLAPEVALACQ 319

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQ 233
           LY      FP    +Y   +Y  YQ
Sbjct: 320 LYRTVARRFP----QYRTIFYHGYQ 340


>gi|313219016|emb|CBY43265.1| unnamed protein product [Oikopleura dioica]
          Length = 393

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 10/126 (7%)

Query: 570 DVYDEINL------AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           D  D+IN       A  Q    ++   TK+ A+ L  YLY+R  R   +H +    ER  
Sbjct: 166 DENDKINFLTDLLTATDQNTCFVVFTETKKGADYLDNYLYDRGFRSTCIHGDRNQREREG 225

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAA 679
            ++  R     VLV   +   GLDIP    V   D  +D + ++    +T  +  IG A 
Sbjct: 226 ALKSFREAVTPVLVATAVAARGLDIPNVRHVINFDLPSDIDEYVHRIGRTGRVGNIGLAT 285

Query: 680 RNVNSK 685
              N K
Sbjct: 286 SFFNDK 291


>gi|304388291|ref|ZP_07370407.1| DNA helicase RecG [Neisseria meningitidis ATCC 13091]
 gi|304337722|gb|EFM03875.1| DNA helicase RecG [Neisseria meningitidis ATCC 13091]
          Length = 680

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++     G  +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPELNIGL--VHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|300811688|ref|ZP_07092163.1| primosomal protein N' [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497315|gb|EFK32362.1| primosomal protein N' [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 793

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 15/106 (14%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINL 641
            L   T+++ E+L E   +  I    +  +V T  R     +I+     G+ D+L+G  +
Sbjct: 549 FLGTGTQKVQEELAELFPQAKI----LRMDVDTTRRKGSYDKILTSFGQGEADILLGTQM 604

Query: 642 LREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           + +GLD P   LV +++AD   +L       R+   L Q  GRA R
Sbjct: 605 IAKGLDFPNVTLVGVINADTGLWLPDYNASERTFELLTQVAGRAGR 650


>gi|294787729|ref|ZP_06752973.1| ATP-dependent DNA helicase RecG [Simonsiella muelleri ATCC 29453]
 gi|294484022|gb|EFG31705.1| ATP-dependent DNA helicase RecG [Simonsiella muelleri ATCC 29453]
          Length = 680

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L   T  +AE L  +L   NI +  +H  +K  E+  ++ +   G  +VLV   ++  G+
Sbjct: 488 LQTATDTLAE-LQNHLPSLNIGL--VHGRMKAAEKAAVMSEFISGSLNVLVATTVIEVGV 544

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           D+P   L+ I  A++ G       L Q  GR  R    ++ V+L+A+ + +
Sbjct: 545 DVPNASLMVIEHAERMGL----AQLHQLRGRVGRGAVASTCVLLFAEPLGQ 591


>gi|256761066|ref|ZP_05501646.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T3]
 gi|256682317|gb|EEU22012.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T3]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 521 LRPTTIVVSATPGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYD 573
           L+P  + ++ATP    L      E    II E    P G +  P+E R  R  Q++ V +
Sbjct: 400 LKPDVLFMTATPIPRTLAITAYGEMDVSIIDEM---PAGRI--PIETRWIRPPQLDTVLE 454

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDL---------TEYLYERNIRVRYMHSEVKTLERI 622
             E  LA      I+  ++ +  A D+          +  Y    +V  +H ++K  E+ 
Sbjct: 455 WMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKD 514

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+++ +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  GR  R  
Sbjct: 515 DIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLRGRVGRGS 570

Query: 683 N-SKVILYAD 691
           + S  IL A+
Sbjct: 571 SASYCILVAN 580


>gi|255003926|ref|ZP_05278727.1| transcription repair coupling factor (mfd) [Anaplasma marginale
           str. Virginia]
          Length = 1148

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N++V   H    T    +I+ D   GKF VL+  +++  G+DIP    + + +AD  G  
Sbjct: 843 NVKVEVAHGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPFANTIIVHNADMFGL- 901

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R+
Sbjct: 902 ---AQLYQLKGRVGRS 914


>gi|228906670|ref|ZP_04070544.1| DNA/RNA helicase [Bacillus thuringiensis IBL 200]
 gi|228852982|gb|EEM97762.1| DNA/RNA helicase [Bacillus thuringiensis IBL 200]
          Length = 795

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 11/100 (11%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   + R A  L+ Y  E       +HSE K + R + I+ L   + D +  ++L  
Sbjct: 431 RTIVFCSSIRQAVFLSTYFNENGYSTISLHSETKHISREDAIKQLDNNELDAIFTVDLFN 490

Query: 644 EGLDIPECGLVAILDADKEGFLR---SKTSLIQTIGRAAR 680
           EG+DIP          D   F+R   S T   Q IGR  R
Sbjct: 491 EGVDIP--------SVDTLLFVRPTESLTIFTQQIGRGLR 522


>gi|224023580|ref|ZP_03641946.1| hypothetical protein BACCOPRO_00284 [Bacteroides coprophilus DSM
           18228]
 gi|224016802|gb|EEF74814.1| hypothetical protein BACCOPRO_00284 [Bacteroides coprophilus DSM
           18228]
          Length = 845

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  G
Sbjct: 640 IIADFEEGKTDILIGTQMVSKGLDFDRVSVVGILNADSMLNYPDFRSYERAFQLMAQVAG 699

Query: 677 RAA-RNVNSKVIL 688
           RA  RN    V+L
Sbjct: 700 RAGRRNKQGLVVL 712


>gi|195021969|ref|XP_001985492.1| GH14471 [Drosophila grimshawi]
 gi|193898974|gb|EDV97840.1| GH14471 [Drosophila grimshawi]
          Length = 603

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G   VL+   L+  
Sbjct: 372 VLVFVQSKERAKQLFEELLYDGINVDVIHAERTQHQRDNCVRAFREGHIWVLICTELMGR 431

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D     LV   D     F  +  S I  IGR  R
Sbjct: 432 GIDFKGVNLVINYD-----FPPTTISYIHRIGRTGR 462


>gi|70726703|ref|YP_253617.1| primosomal protein [Staphylococcus haemolyticus JCSC1435]
 gi|68447427|dbj|BAE05011.1| primosomal protein [Staphylococcus haemolyticus JCSC1435]
          Length = 802

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           +++ +   GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  
Sbjct: 594 KLLNEFEEGKGDILLGTQMIAKGLDYPNITLVGVLNADTMLNLPDFRASERTYQLLTQVA 653

Query: 676 GRAARN 681
           GRA R+
Sbjct: 654 GRAGRH 659


>gi|22536519|ref|NP_687370.1| helicase [Streptococcus agalactiae 2603V/R]
 gi|25010398|ref|NP_734793.1| competence protein ComFA [Streptococcus agalactiae NEM316]
 gi|76788009|ref|YP_329058.1| competence protein ComFA [Streptococcus agalactiae A909]
 gi|77406961|ref|ZP_00783980.1| competence protein F [Streptococcus agalactiae H36B]
 gi|77410656|ref|ZP_00787016.1| competence protein F [Streptococcus agalactiae CJB111]
 gi|22533352|gb|AAM99242.1|AE014207_3 helicase, putative [Streptococcus agalactiae 2603V/R]
 gi|23094750|emb|CAD45969.1| competence protein ComFA [Streptococcus agalactiae NEM316]
 gi|76563066|gb|ABA45650.1| competence protein ComFA, putative [Streptococcus agalactiae A909]
 gi|77163371|gb|EAO74322.1| competence protein F [Streptococcus agalactiae CJB111]
 gi|77174439|gb|EAO77289.1| competence protein F [Streptococcus agalactiae H36B]
          Length = 429

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           K+  R+++++D R  K  +LV   +L  G+  P    V ++ A+   F  +K+SL+Q  G
Sbjct: 333 KSTSRLKLVQDFRDNKLSILVSTTILERGVTFPSVD-VFVIQANHHLF--TKSSLVQISG 389

Query: 677 RAARNVN-SKVILY--ADTITKSIQLAIDE 703
           R  R +   + +LY   D  +KS+  AI E
Sbjct: 390 RVGRALERPEGLLYFLHDGKSKSMHQAIKE 419


>gi|332523343|ref|ZP_08399595.1| helicase C-terminal domain protein [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314607|gb|EGJ27592.1| helicase C-terminal domain protein [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 955

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 7/124 (5%)

Query: 564 ARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           ++ +V+ + D+I      G  +R L+   +K  A +L+     + ++ + +  +     R
Sbjct: 428 SKERVKHILDKIEYYGHDGQKVRGLIFCSSKDEARELSIQFNLQGLKTKALTGDDNQKVR 487

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            E ++ L  G+ D L+ +++  EG+DIP    V +L        +S    IQ +GR  R 
Sbjct: 488 EEAVKALESGQLDYLLTVDIFNEGIDIPSVNQVVMLRNT-----QSSIIFIQQLGRGLRK 542

Query: 682 VNSK 685
            +SK
Sbjct: 543 HSSK 546


>gi|326490075|dbj|BAJ94111.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 346

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 17/174 (9%)

Query: 525 TIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEI---RSARTQVEDVYDE 574
           T++ SAT PG  +      LE    + V ++   T L+   VE       R+ + D+   
Sbjct: 79  TLLFSATFPGEIQKMASDFLENYIFLAVGRVGSSTELIAQRVEFVQEADKRSHLMDLLHA 138

Query: 575 INLAAQQGLRILLTVL--TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
              ++ QG + L  V   TKR A+ L  +L         +H +    ER   +R  + G+
Sbjct: 139 QRDSSDQGKQALTLVFVETKRGADSLENWLCTNGFPATSIHGDRNQQEREHALRSFKSGQ 198

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             +LV  ++   GLDIP    V   D   +         +  IGR  R   S +
Sbjct: 199 TPILVATDVAARGLDIPHVAHVVNFDLPND-----IDDYVHRIGRTGRAGKSGI 247


>gi|332653345|ref|ZP_08419090.1| primosomal protein N` [Ruminococcaceae bacterium D16]
 gi|332518491|gb|EGJ48094.1| primosomal protein N` [Ruminococcaceae bacterium D16]
          Length = 817

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 11/105 (10%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI--EIIRDLRLGKFDVLVGINLLR 643
            + V T+R+ E+L E      + V  M S+  T      +I+   R GK  +L+G  ++ 
Sbjct: 572 FIGVGTQRVQEELEERF--PGVEVLRMDSDTVTAAHSHEKILEQFRSGKAPILLGTQMVA 629

Query: 644 EGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +GLD     LV ++ AD+  F+       R+ + L Q +GRA R 
Sbjct: 630 KGLDFENVTLVGVVLADQSLFVDDFRAGERTFSLLTQVVGRAGRG 674


>gi|297622638|ref|YP_003704072.1| type III restriction protein res subunit [Truepera radiovictrix DSM
           17093]
 gi|297163818|gb|ADI13529.1| type III restriction protein res subunit [Truepera radiovictrix DSM
           17093]
          Length = 480

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 16/144 (11%)

Query: 575 INLAAQQGLRILLTVLTKRMAE--------DLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           I    +  LR+L  +L +   E        + T Y   ++  +  +  + K  ER EI+ 
Sbjct: 316 IAFGTEGKLRVLADLLRRHFPERTLVFTDDNATVYRVSQDFLIPAITHQTKVKERHEILA 375

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R G + VLV   +L EG+D+P   +  +L         S    +Q +GR  R    K+
Sbjct: 376 RFRSGAYPVLVTSRVLNEGVDVPAAKVAVVLSGTG-----STREYVQRLGRILRRGEGKL 430

Query: 687 ILYADTITKSIQLAIDETTRRREK 710
            +  + + +      +E   RR +
Sbjct: 431 AVLYEVVAEGTS---EEGVSRRRR 451


>gi|289428099|ref|ZP_06429802.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           J165]
 gi|289158699|gb|EFD06900.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           J165]
 gi|313822547|gb|EFS60261.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
 gi|314960461|gb|EFT04563.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
 gi|314989611|gb|EFT33702.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
 gi|315085333|gb|EFT57309.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
 gi|327327119|gb|EGE68898.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA3]
 gi|327443743|gb|EGE90397.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
 gi|328754844|gb|EGF68460.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
          Length = 560

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 64/126 (50%), Gaps = 8/126 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G+  +LV  ++  
Sbjct: 301 KVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVAA 360

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVILYADT-----ITKSI 697
            G+D+   G+  +++ +     ++    I   GRA A+ +   ++ +AD      I K++
Sbjct: 361 RGIDV--TGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADVTRWKLINKAL 418

Query: 698 QLAIDE 703
            L + E
Sbjct: 419 NLELSE 424


>gi|257467948|ref|ZP_05632044.1| ATP-dependent DNA helicase recG [Fusobacterium ulcerans ATCC 49185]
 gi|317062234|ref|ZP_07926719.1| ATP-dependent DNA helicase [Fusobacterium ulcerans ATCC 49185]
 gi|313687910|gb|EFS24745.1| ATP-dependent DNA helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 686

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 50/91 (54%), Gaps = 6/91 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+ + E++++YL   + R+  +H  +K  E+ E++   +  + D++V   ++  G+D+P 
Sbjct: 499 TEELLEEVSKYL--PDYRIGVLHGRMKNAEKDEVMSRFKNKELDIMVSTTVIEVGVDVPN 556

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             ++ I +A++ G     ++L Q  GR  R 
Sbjct: 557 ATVMVINNAERFGL----SALHQLRGRVGRG 583


>gi|239944591|ref|ZP_04696528.1| ATP-dependent DNA helicase RecG [Streptomyces roseosporus NRRL
           15998]
 gi|239991053|ref|ZP_04711717.1| ATP-dependent DNA helicase RecG [Streptomyces roseosporus NRRL
           11379]
 gi|291448054|ref|ZP_06587444.1| ATP-dependent DNA helicase RecG [Streptomyces roseosporus NRRL
           15998]
 gi|291351001|gb|EFE77905.1| ATP-dependent DNA helicase RecG [Streptomyces roseosporus NRRL
           15998]
          Length = 734

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            + V  +H  +   E+ +++R    G  DVLV   ++  G+++P    + I+DAD+ G  
Sbjct: 550 GLTVEVLHGRMHPDEKDDVMRRFAAGDVDVLVATTVIEVGVNVPNATAMVIMDADRFGV- 608

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R   + + L
Sbjct: 609 ---SQLHQLRGRVGRGSAAGLCL 628


>gi|294898580|ref|XP_002776285.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239883195|gb|EER08101.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 654

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 2/108 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+   TKR A+D+T  L         +H + K  ER  ++ + + G+  +++  ++  
Sbjct: 452 KALIFTDTKRCADDITRVLRRDGWPALSIHGDKKQSERDWVLAEFKSGRMPIMIATDVAS 511

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
            GLD+ +   V  ++ D  G +      I   GRA  +  +     AD
Sbjct: 512 RGLDVKDVKYV--INYDFPGTVEDYVHRIGRTGRAGAHGTAYSFFTAD 557


>gi|261195180|ref|XP_002623994.1| RecQ family helicase MusN [Ajellomyces dermatitidis SLH14081]
 gi|239587866|gb|EEQ70509.1| RecQ family helicase MusN [Ajellomyces dermatitidis SLH14081]
          Length = 1562

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 14/142 (9%)

Query: 582  GLRILLTVLTKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            G   ++  L+++  E + E L +   I+  + H+ + + +RI I RD + GK++V+V   
Sbjct: 921  GKAGIIYCLSRQSCERVAEQLRDTHKIKAVHYHAGLPSNDRISIQRDWQRGKYNVIVATI 980

Query: 641  LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV--NSKVILYADTITKSIQ 698
                G+D P+   V           +S     Q  GRA R+   +   + Y    T SI+
Sbjct: 981  AFGMGIDKPDVRFVI-----HHSMPKSLEGYYQETGRAGRDGERSGCYLYYGFQDTASIR 1035

Query: 699  LAID------ETTRRREKQLEH 714
              ID      E   R+ + L H
Sbjct: 1036 HMIDKGEGSSEQKSRQHRMLRH 1057


>gi|256088516|ref|XP_002580378.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665945|emb|CAZ36617.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 959

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 21/143 (14%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +A+ +T+  Y       Y+H+ +   +R  +  D R G    LV  +LL  G+DIP   +
Sbjct: 804 LAKKITQLGYS----CYYIHARMSQQDRNRVFHDFRNGCCRNLVCTDLLTRGIDIPTVNV 859

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR----NVNSKVILYAD-----TITKSIQLAIDET 704
           V   D     F +   + +  IGR+ R     +   ++ YAD     T+   +   I   
Sbjct: 860 VINFD-----FPKYSETYLHRIGRSGRFGHLGIAINLVTYADRYSLKTVETELVTEIKPI 914

Query: 705 TRRREKQL---EHNKKHNINPQS 724
            +  +K+L   E+  ++N++P +
Sbjct: 915 PKEIDKRLYVAEYQNENNLDPMT 937


>gi|18645108|gb|AAL76409.1| ATP-dependent RNA helicase RhlE [uncultured marine proteobacterium]
          Length = 446

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 38/75 (50%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TKR A  L E+L +++I+   +H       R   + + + GK  VLV  ++  
Sbjct: 254 QVLVFSRTKRGANRLAEFLEKKDIQAAAIHGNKSQGARTRALSEFKSGKLRVLVATDIAA 313

Query: 644 EGLDIPECGLVAILD 658
            GLDI +   V  LD
Sbjct: 314 RGLDIEQLPQVVNLD 328


>gi|85057334|ref|YP_456250.1| superfamily II DNA/RNA helicase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789439|gb|ABC65171.1| superfamily II DNA and RNA helicase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 547

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++T YL ++      +H ++K  +R  ++ + R GK  +L+  ++   GLDI +
Sbjct: 251 TKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAARGLDISD 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +V   D   E         +  IGR  R
Sbjct: 311 IKMVINYDLPHED-----EVYVHRIGRTGR 335


>gi|15615072|ref|NP_243375.1| primosome assembly protein PriA [Bacillus halodurans C-125]
 gi|10175129|dbj|BAB06228.1| primosomal replication factor Y [Bacillus halodurans C-125]
          Length = 804

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+++ E+LT+ L E  +    + +  K     ++++    G+ D+L+G  ++ +GLD P 
Sbjct: 564 TQKVEEELTKVLPEARVIRMDVDTTRKKGAHEQLLKQFGQGEADILLGTQMIAKGLDFPN 623

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
             LV IL AD    L       R+   L Q  GRA R+
Sbjct: 624 ITLVGILAADAMLHLPDFRATERTFQLLSQVSGRAGRH 661


>gi|311898765|dbj|BAJ31173.1| putative ATP-dependent DNA helicase [Kitasatospora setae KM-6054]
          Length = 731

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           LT   AE++TE+L  R  +V       +  ER E    L   +   LV  + L  G D P
Sbjct: 267 LTVAAAEEVTEFLRGRGYQVAAYSGRTEDAERREAETALLENRVKALVATSALGMGFDKP 326

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G V  L     G   S  +  Q +GRA R V+   +L
Sbjct: 327 DLGFVVHL-----GSPSSPIAYYQQVGRAGRGVDRAEVL 360


>gi|310287260|ref|YP_003938518.1| transcription-repair coupling factor (superfamily II helicase)
           [Bifidobacterium bifidum S17]
 gi|309251196|gb|ADO52944.1| Transcription-repair coupling factor (superfamily II helicase)
           [Bifidobacterium bifidum S17]
          Length = 1199

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 280 CIYGIGSVES--YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            + G+G V+   ++Q       G+ +   ++   LV+  Y R D+ + RG F V G  I+
Sbjct: 170 VVKGLGDVDPLVFTQ-------GEELPLDDVSRRLVENAYTRVDLVMDRGEFAVRGGIID 222

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFY 364
           +FP        R+  FG++I+ I EF+
Sbjct: 223 VFPPTAPHPV-RIEFFGDEIDSIREFH 248


>gi|224052974|ref|XP_002297644.1| predicted protein [Populus trichocarpa]
 gi|222844902|gb|EEE82449.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L  +L   N     +H +    ER + +R  + G   +LV  ++   G
Sbjct: 387 LVFVETKKGADSLEHWLCINNFPATSIHGDRSQQEREQALRSFKSGNTPILVATDVAARG 446

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDIP    V   D   +         +  IGR  R
Sbjct: 447 LDIPRVAHVVNFDLPND-----IDDYVHRIGRTGR 476


>gi|221215274|ref|ZP_03588240.1| putative ATP-dependent helicase lhr [Burkholderia multivorans CGD1]
 gi|221164958|gb|EED97438.1| putative ATP-dependent helicase lhr [Burkholderia multivorans CGD1]
          Length = 1466

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSE 615
           P+E   A    E +YD I   A      L+ V T+R AE +  +L ER  +  +   H  
Sbjct: 245 PLEPVMANDVWEQLYDRIAALAAAHRTTLVFVNTRRTAERMARHLAERLGKDAIAAHHGS 304

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ G+  +LV    L  G+DI +  LV      + G  R     +Q +
Sbjct: 305 LAKEHRFDAEQRLKRGELKLLVATASLELGIDIGDVDLVC-----QVGSPRGIAPFLQRV 359

Query: 676 GRAARNVNS 684
           GR+  +V  
Sbjct: 360 GRSGHHVGG 368


>gi|254436450|ref|ZP_05049955.1| Helicase conserved C-terminal domain protein [Nitrosococcus oceani
           AFC27]
 gi|207087984|gb|EDZ65258.1| Helicase conserved C-terminal domain protein [Nitrosococcus oceani
           AFC27]
          Length = 517

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           DV++ + + +EG D P C  V  +     G+ RS T ++Q IGRA R+   K
Sbjct: 156 DVIIALGMAKEGFDWPFCEHVLTI-----GYRRSMTEIVQIIGRATRDSEGK 202


>gi|160939694|ref|ZP_02087042.1| hypothetical protein CLOBOL_04586 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437485|gb|EDP15249.1| hypothetical protein CLOBOL_04586 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1200

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V + H +++  E   I+ D   G+ DVLV   ++  GLDI     + I DAD+ G     
Sbjct: 890 VTFAHGQMREHELERIMADFINGEIDVLVSTTIIETGLDISNANTMIIHDADRMGL---- 945

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
           + L Q  GR  R+  +    YA  + K  +L  +E  +R
Sbjct: 946 SQLYQLRGRVGRSNRTS---YAFLMYKRDKLLREEAEKR 981


>gi|148670595|gb|EDL02542.1| DNA segment, Chr 11, Lothar Hennighausen 2, expressed, isoform
           CRA_a [Mus musculus]
          Length = 609

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+I++ R G   +LV  ++  EGLDI +C +V      + G L ++ S++Q  GRA
Sbjct: 353 EVIQEFRDGILSLLVATSVAEEGLDIAQCNVVV-----RYGLLTNEISMVQARGRA 403


>gi|161520961|ref|YP_001584388.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189352858|ref|YP_001948485.1| ATP-dependent helicase [Burkholderia multivorans ATCC 17616]
 gi|160345011|gb|ABX18096.1| DEAD/H associated domain protein [Burkholderia multivorans ATCC
           17616]
 gi|189336880|dbj|BAG45949.1| ATP-dependent helicase [Burkholderia multivorans ATCC 17616]
          Length = 1480

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSE 615
           P+E   A    E +YD I   A      L+ V T+R AE +  +L ER  +  +   H  
Sbjct: 259 PLEPVMANDVWEQLYDRIAALAAAHRTTLVFVNTRRTAERMARHLAERLGKDAIAAHHGS 318

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ G+  +LV    L  G+DI +  LV      + G  R     +Q +
Sbjct: 319 LAKEHRFDAEQRLKRGELKLLVATASLELGIDIGDVDLVC-----QVGSPRGIAPFLQRV 373

Query: 676 GRAARNVNS 684
           GR+  +V  
Sbjct: 374 GRSGHHVGG 382


>gi|121603277|ref|YP_980606.1| primosomal protein N' [Polaromonas naphthalenivorans CJ2]
 gi|120592246|gb|ABM35685.1| primosomal protein N' [Polaromonas naphthalenivorans CJ2]
          Length = 709

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT----FTMAKVIEAMQRP---AIVMAPN 202
           S  Q  AIA+       +++  LL G TGSGKT       AKV+E  Q P    +VM P 
Sbjct: 139 SAQQACAIAEFDAETSEKQRPALLFGATGSGKTEVYLRAAAKVLE--QDPEAQVLVMVPE 196

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
             L  QL + F+  F H   E  V  +    P
Sbjct: 197 INLTPQLQARFEARFAHLGRERVVPMHSGLTP 228


>gi|325133693|gb|EGC56350.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M13399]
 gi|325143874|gb|EGC66189.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M01-240013]
          Length = 680

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++     G  +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPELNIGL--VHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|320162646|gb|EFW39545.1| ATP-dependent RNA helicase DRS1 [Capsaspora owczarzaki ATCC 30864]
          Length = 924

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            ++   +H ++  L+R+E +   + G+ D L+  +L   GLDI   G+  +++AD    L
Sbjct: 611 GLKAAELHGDLNQLQRLESLEAFKEGRVDFLLATDLASRGLDI--VGVETVVNADMPNTL 668

Query: 666 RSKTSLIQTIGRAAR 680
              T  I  +GR AR
Sbjct: 669 ---TQYIHRVGRTAR 680


>gi|311064109|ref|YP_003970834.1| transcription-repair coupling factor [Bifidobacterium bifidum
           PRL2010]
 gi|310866428|gb|ADP35797.1| Mfd Transcription-repair coupling factor [Bifidobacterium bifidum
           PRL2010]
          Length = 1199

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 280 CIYGIGSVES--YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            + G+G V+   ++Q       G+ +   ++   LV+  Y R D+ + RG F V G  I+
Sbjct: 170 VVKGLGDVDPLVFTQ-------GEELPLDDVSRRLVENAYTRVDLVMDRGEFAVRGGIID 222

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFY 364
           +FP        R+  FG++I+ I EF+
Sbjct: 223 VFPPTAPHPV-RIEFFGDEIDSIREFH 248


>gi|296387524|ref|ZP_06876999.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 449

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 10/144 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  E+L   L  + I    +H +     R+  ++  + G+ D+LV  ++   GLDI E
Sbjct: 253 TRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAARGLDIEE 312

Query: 651 CGLVAILDAD--KEGFLRSKTSLIQTIGRAARNVNSKVILYADTI--TKSIQLAIDETTR 706
             LV   D     E ++      I   GRA  +  +  ++ AD +    +I+  I +T +
Sbjct: 313 MPLVVNFDLPIVAEDYVHR----IGRTGRAGASGQAVSLVCADEVELLAAIETLIGQTLQ 368

Query: 707 RREKQLEHNKKHNINPQSVKEKIM 730
           RRE+  +   +H + PQ+    ++
Sbjct: 369 RREEP-DFEPEHRV-PQTAPGGVV 390


>gi|256958386|ref|ZP_05562557.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DS5]
 gi|257078303|ref|ZP_05572664.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis JH1]
 gi|294780233|ref|ZP_06745605.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis PC1.1]
 gi|307270576|ref|ZP_07551874.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX4248]
 gi|256948882|gb|EEU65514.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis DS5]
 gi|256986333|gb|EEU73635.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis JH1]
 gi|294452776|gb|EFG21206.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis PC1.1]
 gi|306513157|gb|EFM81791.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX4248]
 gi|315034810|gb|EFT46742.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0027]
 gi|329575686|gb|EGG57213.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1467]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 521 LRPTTIVVSATPGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYD 573
           L+P  + ++ATP    L      E    II E    P G +  P+E R  R  Q++ V +
Sbjct: 400 LKPDVLFMTATPIPRTLAITAYGEMDVSIIDEM---PAGRI--PIETRWIRPPQLDTVLE 454

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDL---------TEYLYERNIRVRYMHSEVKTLERI 622
             E  LA      I+  ++ +  A D+          +  Y    +V  +H ++K  E+ 
Sbjct: 455 WMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKD 514

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+++ +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  GR  R  
Sbjct: 515 DIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLRGRVGRGS 570

Query: 683 N-SKVILYAD 691
           + S  IL A+
Sbjct: 571 SASYCILVAN 580


>gi|255970699|ref|ZP_05421285.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T1]
 gi|312953204|ref|ZP_07772050.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0102]
 gi|255961717|gb|EET94193.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T1]
 gi|310628821|gb|EFQ12104.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0102]
 gi|315152773|gb|EFT96789.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0031]
 gi|315159392|gb|EFU03409.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0312]
 gi|323479037|gb|ADX78476.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis 62]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 521 LRPTTIVVSATPGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYD 573
           L+P  + ++ATP    L      E    II E    P G +  P+E R  R  Q++ V +
Sbjct: 400 LKPDVLFMTATPIPRTLAITAYGEMDVSIIDEM---PAGRI--PIETRWIRPPQLDTVLE 454

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDL---------TEYLYERNIRVRYMHSEVKTLERI 622
             E  LA      I+  ++ +  A D+          +  Y    +V  +H ++K  E+ 
Sbjct: 455 WMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKD 514

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+++ +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  GR  R  
Sbjct: 515 DIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLRGRVGRGS 570

Query: 683 N-SKVILYAD 691
           + S  IL A+
Sbjct: 571 SASYCILVAN 580


>gi|255023004|ref|ZP_05294990.1| primosome assembly protein PriA [Listeria monocytogenes FSL J1-208]
          Length = 380

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     ++++  R  + D+L+G  ++ +GLD P
Sbjct: 141 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLKSFRNHEADILLGTQMIAKGLDFP 199

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 200 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 238


>gi|255974275|ref|ZP_05424861.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T2]
 gi|256618137|ref|ZP_05474983.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis ATCC 4200]
 gi|300861637|ref|ZP_07107721.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TUSoD Ef11]
 gi|307284862|ref|ZP_07565018.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0860]
 gi|255967147|gb|EET97769.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis T2]
 gi|256597664|gb|EEU16840.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis ATCC 4200]
 gi|295114424|emb|CBL33061.1| ATP-dependent DNA helicase RecG [Enterococcus sp. 7L76]
 gi|300849098|gb|EFK76851.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TUSoD Ef11]
 gi|306503121|gb|EFM72378.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0860]
 gi|315031793|gb|EFT43725.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0017]
 gi|315145460|gb|EFT89476.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX2141]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 521 LRPTTIVVSATPGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYD 573
           L+P  + ++ATP    L      E    II E    P G +  P+E R  R  Q++ V +
Sbjct: 400 LKPDVLFMTATPIPRTLAITAYGEMDVSIIDEM---PAGRI--PIETRWIRPPQLDTVLE 454

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDL---------TEYLYERNIRVRYMHSEVKTLERI 622
             E  LA      I+  ++ +  A D+          +  Y    +V  +H ++K  E+ 
Sbjct: 455 WMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKD 514

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+++ +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  GR  R  
Sbjct: 515 DIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLRGRVGRGS 570

Query: 683 N-SKVILYAD 691
           + S  IL A+
Sbjct: 571 SASYCILVAN 580


>gi|229541140|ref|ZP_04430200.1| primosomal protein N' [Bacillus coagulans 36D1]
 gi|229325560|gb|EEN91235.1| primosomal protein N' [Bacillus coagulans 36D1]
          Length = 801

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPA 196
           FQ    +  + +Q  AI  +L  +  +R +  LL GVTGSGKT    + I+ +    + A
Sbjct: 256 FQKSVPHALTAEQKQAIGPVLSAVRENRNETFLLFGVTGSGKTEIYLQSIQEVLNQGKEA 315

Query: 197 IVMAPNKILAAQLYSEFKNFF 217
           IV+ P   L  Q+ + FK+ F
Sbjct: 316 IVLVPEISLTPQMVNRFKSRF 336



 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 17/134 (12%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+++ E+L   L E     R +  +V T  R      +++    G+ D+L+G  ++ +GL
Sbjct: 561 TQKVEEELGRLLPE----ARVIRMDVDTTGRKGAHERMLQSFANGEADILLGTQMIAKGL 616

Query: 647 DIPECGLVAILDADK----EGFLRSKTS---LIQTIGRAARN-VNSKVILYADTITK-SI 697
           D P   LV +L+AD       F  S+ +   L Q  GRA R+ +  +V++   T    SI
Sbjct: 617 DFPNITLVGVLNADTMLHLPDFRASEKTFQLLTQVSGRAGRHQLEGEVVVQTYTPEHYSI 676

Query: 698 QLAIDETTRRREKQ 711
           Q A ++   R  +Q
Sbjct: 677 QFAGEQDYERFYRQ 690


>gi|224108331|ref|XP_002314808.1| predicted protein [Populus trichocarpa]
 gi|222863848|gb|EEF00979.1| predicted protein [Populus trichocarpa]
          Length = 888

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 89/202 (44%), Gaps = 22/202 (10%)

Query: 521 LRPTTIVVSATP--GSWELEQCQGIIVEQIIR-PTGLVDPPVE---IRSARTQVEDVYDE 574
           + P  + +SATP   +  L     + + QI   P G V  PVE           EDVY  
Sbjct: 611 MAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRV--PVETYIFEGNYDGFEDVYKM 668

Query: 575 INLAAQQGLRILLTVLTKRMAEDL---------TEYLYER--NIRVRYMHSEVKTLERIE 623
           +    + G R+ L       +E L          E +  R  +     +H ++K+ ++ E
Sbjct: 669 MRDELEAGGRVYLVYPVIEQSEQLPQLRAAAADLEVISHRFQDYNCGLLHGKMKSDDKDE 728

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            ++  R G   +L+   ++  G+D+P+  ++ +++A++ G  +    L   +GR AR   
Sbjct: 729 ALKRFRSGVTHILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLH-QLRGRVGRGAR--K 785

Query: 684 SKVILYADTITKSIQLAIDETT 705
           SK +L A T +   +L + E +
Sbjct: 786 SKCLLVASTTSSLDRLKVLEKS 807


>gi|123468442|ref|XP_001317439.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121900173|gb|EAY05216.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 416

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 8/117 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V + + A  ++  L   N R    H ++   ERI  I   + G + VLV  N+   G
Sbjct: 251 IIFVGSCKTATIISTLLSNLNFRTIVYHGQLPQRERINAIDRFKNGDYRVLVATNVGSRG 310

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV---ILYADTITKSIQL 699
           LD+P   LV   +  +E         I  +GRA R   S V   I+ A+ +   I+L
Sbjct: 311 LDVPHVDLVINYELPEE-----HEEYIHRVGRAGRAERSGVAVTIITANEVVGYIRL 362


>gi|62389854|ref|YP_225256.1| transcription-repair coupling factor [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325189|emb|CAF19670.1| PUTATIVE TRANSCRIPTION-REPAIR COUPLING FACTOR [Corynebacterium
           glutamicum ATCC 13032]
          Length = 1217

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           A++P  +T   +  S    I   R      L +    +  +   C   +   E  + +  
Sbjct: 78  AWLPSWETLPHERLSPGVDIVGKRAQVLNHLGDLKVVVAAARAFCQPVLKDAEGRAPLT- 136

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            LK G   +   L + LV + YK  D+   RG F   G  ++IFP+ L D   RV  +G+
Sbjct: 137 -LKEGAEFDFSALTTELVFRAYKHVDMVAKRGEFATRGGILDIFPTTL-DYPVRVEFWGD 194

Query: 356 DIEEISEF 363
           ++ +I +F
Sbjct: 195 EVSDIRQF 202


>gi|50401141|sp|Q99J87|DHX58_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DHX58; AltName:
           Full=Probable ATP-dependent helicase LGP2; AltName:
           Full=Protein D11Lgp2; AltName: Full=RIG-I-like receptor
           Lgp2; Short=RLR
 gi|13194586|gb|AAK15474.1| unknown [Mus musculus]
 gi|13194588|gb|AAK15475.1| unknown [Mus musculus]
 gi|20809730|gb|AAH29209.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Mus musculus]
 gi|148670596|gb|EDL02543.1| DNA segment, Chr 11, Lothar Hennighausen 2, expressed, isoform
           CRA_b [Mus musculus]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+I++ R G   +LV  ++  EGLDI +C +V      + G L ++ S++Q  GRA
Sbjct: 422 EVIQEFRDGILSLLVATSVAEEGLDIAQCNVVV-----RYGLLTNEISMVQARGRA 472


>gi|76797823|ref|ZP_00780088.1| competence protein ComFA [Streptococcus agalactiae 18RS21]
 gi|76586837|gb|EAO63330.1| competence protein ComFA [Streptococcus agalactiae 18RS21]
          Length = 429

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           K+  R+++++D R  K  +LV   +L  G+  P    V ++ A+   F  +K+SL+Q  G
Sbjct: 333 KSTSRLKLVQDFRDNKLSILVSTTILERGVTFPSVD-VFVIQANHHLF--TKSSLVQISG 389

Query: 677 RAARNVN-SKVILY--ADTITKSIQLAIDE 703
           R  R +   + +LY   D  +KS+  AI E
Sbjct: 390 RVGRALERPEGLLYFLHDGKSKSMHQAIKE 419


>gi|325919883|ref|ZP_08181873.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325549667|gb|EGD20531.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 506

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A++  L+I+ + L       + E    R  R  Y+HS   +     +++ L   + DV+V
Sbjct: 191 ASEARLKIIASALNYEHCRQVVEAYRARGRRADYVHSRENSTANARVLKKLENHELDVIV 250

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
            +  L EG D P   + A+L         + +  +Q +GR  R V
Sbjct: 251 QVRKLGEGFDHPFLAVAAVLS-----IFANLSPFVQFVGRIMRVV 290


>gi|313807189|gb|EFS45682.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
 gi|313819383|gb|EFS57097.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
 gi|313820647|gb|EFS58361.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
 gi|313825517|gb|EFS63231.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
 gi|314924891|gb|EFS88722.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
 gi|314978145|gb|EFT22239.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
 gi|314986302|gb|EFT30394.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
 gi|315088606|gb|EFT60582.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
          Length = 564

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 64/126 (50%), Gaps = 8/126 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G+  +LV  ++  
Sbjct: 305 KVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVAA 364

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVILYADT-----ITKSI 697
            G+D+   G+  +++ +     ++    I   GRA A+ +   ++ +AD      I K++
Sbjct: 365 RGIDV--TGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADVTRWKLINKAL 422

Query: 698 QLAIDE 703
            L + E
Sbjct: 423 NLELSE 428


>gi|266623849|ref|ZP_06116784.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
 gi|288864339|gb|EFC96637.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
          Length = 1049

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 14/154 (9%)

Query: 571 VYDEINLAAQQGLRILLTVLT----KRMAEDLTEY--LYERNIRVRYMHSEVKTLERIEI 624
           V++E+ +A  Q      +V+     +R AE L  Y  L   +   R  H  +   +R E+
Sbjct: 50  VWEELGMAVYQKCLDCKSVIAFSEGRRYAEKLAYYVNLLGGDGFARVHHGSLSKEQRAEV 109

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            ++LR G+  +L   + +  G+D+ +   V  +     G  R+ +S +Q +GRA  N  S
Sbjct: 110 EQELREGRLRLLCATSSMELGIDVGDIDQVLQI-----GCPRTVSSTMQRLGRAGHNPGS 164

Query: 685 KVI--LYADTITKSIQLAIDETTRRREKQLEHNK 716
             +  +Y  T  +S+   +   T R    +EH K
Sbjct: 165 VSVMYMYPRTAPESVYCGMTAETARL-GGVEHTK 197


>gi|254993323|ref|ZP_05275513.1| primosome assembly protein PriA [Listeria monocytogenes FSL J2-064]
          Length = 682

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     ++++  R  + D+L+G  ++ +GLD P
Sbjct: 558 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLKSFRNHEADILLGTQMIAKGLDFP 616

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 617 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 655


>gi|222152208|ref|YP_002561383.1| transcription-repair coupling factor [Streptococcus uberis 0140J]
 gi|222113019|emb|CAR40328.1| putative transcription-repair coupling factor [Streptococcus uberis
           0140J]
          Length = 1166

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 105/249 (42%), Gaps = 23/249 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QLL+G++GS K   +A   E+     +V+  ++  + +L S+         +  F S  D
Sbjct: 26  QLLMGLSGSSKALAIAANFESQDEKLVVVTSSQNESEKLASDLSAILGEEYIYQFFS--D 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVE 288
                 ++          SS+++ I R+   A + LL+  +   ++ S V     + S +
Sbjct: 84  DVAAAEFIF---------SSLDKTISRVE--AIKFLLDDTEKGILITSIVGLRVLLPSPK 132

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           ++    + L IG+      ++  L    Y +    +  G +   GD ++++    E+  +
Sbjct: 133 TFLTSYLSLSIGNEYNLDTIVKQLTTMGYHKVSQVLHPGEYSKRGDILDVYEITKEN-PY 191

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR-------PTLNTAMKYIKE 401
           R+  FG++++ I EF   T   +  V  I+I   S  +  +         L  A K   +
Sbjct: 192 RIEFFGDEVDGIREFNLDTQLSLSTVNEIEISPASDLILEKNDFIRGINNLEKAYKVAND 251

Query: 402 ELKMRLIEL 410
           +LK  L E+
Sbjct: 252 DLKKYLSEI 260


>gi|218193167|gb|EEC75594.1| hypothetical protein OsI_12293 [Oryza sativa Indica Group]
          Length = 404

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R
Sbjct: 263 DLYDTLTIT-----QAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFR 317

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 318 SGATRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 363


>gi|194760837|ref|XP_001962639.1| GF14338 [Drosophila ananassae]
 gi|190616336|gb|EDV31860.1| GF14338 [Drosophila ananassae]
          Length = 1472

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 586  LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
            ++ V TKR A+ L  +L E       +H +    +R + +RD + GK  VL+  ++   G
Sbjct: 1305 IVFVETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALRDFKTGKMKVLIATSVAARG 1364

Query: 646  LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            LDI     V   D        +    +  IGR  R  N+
Sbjct: 1365 LDIKNVKHVVNFD-----MPNNIADYVHRIGRTGRVGNN 1398


>gi|189463122|ref|ZP_03011907.1| hypothetical protein BACCOP_03833 [Bacteroides coprocola DSM 17136]
 gi|189430101|gb|EDU99085.1| hypothetical protein BACCOP_03833 [Bacteroides coprocola DSM 17136]
          Length = 631

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 8/116 (6%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L + QG  I+ T   K+  E +++YL E+ I   + H+ +    + +  +    G+F V+
Sbjct: 221 LTSVQGSAIVYTRNRKKTKE-VSQYLNEQGITATFYHAGLNNDTKDQRQKGWINGEFRVM 279

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYA 690
           V  N    G+D P+  LV  +D     F  S  +  Q  GRA R+      V+LYA
Sbjct: 280 VATNAFGMGIDKPDVRLVVHID-----FPDSPEAYFQEAGRAGRDGQKSYAVLLYA 330


>gi|152992308|ref|YP_001358029.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424169|dbj|BAF71672.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
          Length = 447

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++LL V  K +A+ + E L   + +V  +H E    ER + +   R G++ +LV  ++  
Sbjct: 246 KVLLFVRKKELADGVAESLRSWDYKVGILHGERTHQERKKSLNAFREGRYRILVATDIAA 305

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLDI +  +V   D         K   I  +GR  R
Sbjct: 306 RGLDISDLDVVINYD-----IPHVKHDFIHRVGRTGR 337


>gi|85374570|ref|YP_458632.1| primosome assembly protein PriA [Erythrobacter litoralis HTCC2594]
 gi|84787653|gb|ABC63835.1| primosomal protein N [Erythrobacter litoralis HTCC2594]
          Length = 721

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            +R+A+++ E L +  + V    +     +  E +R     + DV+VG  L+ +G   PE
Sbjct: 486 VERIADEVAEILPDARVAVVTSDTLNTPDKAAEFVRQAEAREIDVIVGTQLVTKGFHFPE 545

Query: 651 CGLVAILDAD---KEGFLRSK----TSLIQTIGRAARNVNSKVIL 688
             LV ++DAD   + G LR+       + Q  GRA R      +L
Sbjct: 546 LTLVGVVDADLGLEGGDLRAAERTYQQVAQVAGRAGRGSKPGEVL 590


>gi|329297879|ref|ZP_08255215.1| ATP-dependent RNA helicase RhlB [Plautia stali symbiont]
          Length = 431

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 18/122 (14%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   ED+  +L     RV  ++ +V   +R+ I+ D+  G  D+LV  ++  
Sbjct: 258 RAIVFANTKHRCEDIWGHLAADGHRVGLLNGDVAQKKRLRILDDVTKGDVDILVATDVAA 317

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            GL IP    V   D   D+E +       +  IGR  R         A     SI LA 
Sbjct: 318 RGLHIPAVTHVFNYDLPDDREDY-------VHRIGRTGR---------AGASGHSISLAC 361

Query: 702 DE 703
           +E
Sbjct: 362 EE 363


>gi|315172952|gb|EFU16969.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1346]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 521 LRPTTIVVSATPGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYD 573
           L+P  + ++ATP    L      E    II E    P G +  P+E R  R  Q++ V +
Sbjct: 400 LKPDVLFMTATPIPRTLAITAYGEMDVSIIDEM---PAGRI--PIETRWIRPPQLDTVLE 454

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDL---------TEYLYERNIRVRYMHSEVKTLERI 622
             E  LA      I+  ++ +  A D+          +  Y    +V  +H ++K  E+ 
Sbjct: 455 WMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKD 514

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+++ +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  GR  R  
Sbjct: 515 DIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLRGRVGRGS 570

Query: 683 N-SKVILYAD 691
           + S  IL A+
Sbjct: 571 SASYCILVAN 580


>gi|307276670|ref|ZP_07557788.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX2134]
 gi|306506780|gb|EFM75932.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX2134]
 gi|327536226|gb|AEA95060.1| DNA helicase RecG [Enterococcus faecalis OG1RF]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 521 LRPTTIVVSATPGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYD 573
           L+P  + ++ATP    L      E    II E    P G +  P+E R  R  Q++ V +
Sbjct: 400 LKPDVLFMTATPIPRTLAITAYGEMDVSIIDEM---PAGRI--PIETRWIRPPQLDTVLE 454

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDL---------TEYLYERNIRVRYMHSEVKTLERI 622
             E  LA      I+  ++ +  A D+          +  Y    +V  +H ++K  E+ 
Sbjct: 455 WMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKD 514

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+++ +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  GR  R  
Sbjct: 515 DIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLRGRVGRGS 570

Query: 683 N-SKVILYAD 691
           + S  IL A+
Sbjct: 571 SASYCILVAN 580


>gi|300714630|ref|YP_003739433.1| ATP-dependent DNA helicase RecG [Erwinia billingiae Eb661]
 gi|299060466|emb|CAX57573.1| ATP-dependent DNA helicase RecG [Erwinia billingiae Eb661]
          Length = 693

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L   L E N+ +  +H  +K  E+  +++  +LG+  +L+   ++  G+D+P   L+ 
Sbjct: 509 EELKLALPELNVGL--VHGRMKPSEKQAVMQAFKLGEIHLLIATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKSIQ 698
           I + ++ G       L Q  GR  R    +  V+LY   ++K+ Q
Sbjct: 567 IENPERLGL----AQLHQLRGRVGRGSVASHCVLLYKAPLSKTAQ 607


>gi|298675601|ref|YP_003727351.1| ERCC4 domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298288589|gb|ADI74555.1| ERCC4 domain protein [Methanohalobium evestigatum Z-7303]
          Length = 759

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++EII   + G+++V+V  ++  EGLDIP   LV   +      + S+   IQ  GR A
Sbjct: 414 QQVEIIDKFKTGEYNVIVSTSVAEEGLDIPSTDLVLFYEP-----VPSEIRSIQRKGRTA 468

Query: 680 RNVNSKVIL 688
           R    +V++
Sbjct: 469 RKQEGRVVV 477


>gi|288923497|ref|ZP_06417616.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
 gi|288345155|gb|EFC79565.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
          Length = 783

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 12/105 (11%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +    R +++     G+ DVLV   ++  G+D+P   ++ ILD+D  G  
Sbjct: 599 GLRVEGLHGRMPAAARDDVMTRFAAGEVDVLVATTVIEVGVDVPNATVMIILDSDWFGV- 657

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
              + L Q  GR  R     + L        +Q  +D T    E+
Sbjct: 658 ---SQLHQLRGRVGRGSAPGICL--------LQTCVDATAPAAER 691


>gi|229548042|ref|ZP_04436767.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis ATCC 29200]
 gi|257080492|ref|ZP_05574853.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis E1Sol]
 gi|257091345|ref|ZP_05585706.1| ATP-dependent DNA helicase recG [Enterococcus faecalis CH188]
 gi|312905408|ref|ZP_07764522.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0635]
 gi|229306831|gb|EEN72827.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis ATCC 29200]
 gi|256988522|gb|EEU75824.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis E1Sol]
 gi|257000157|gb|EEU86677.1| ATP-dependent DNA helicase recG [Enterococcus faecalis CH188]
 gi|310631137|gb|EFQ14420.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0635]
 gi|315161222|gb|EFU05239.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0645]
 gi|315577138|gb|EFU89329.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0630]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 521 LRPTTIVVSATPGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYD 573
           L+P  + ++ATP    L      E    II E    P G +  P+E R  R  Q++ V +
Sbjct: 400 LKPDVLFMTATPIPRTLAITAYGEMDVSIIDEM---PAGRI--PIETRWIRPPQLDTVLE 454

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDL---------TEYLYERNIRVRYMHSEVKTLERI 622
             E  LA      I+  ++ +  A D+          +  Y    +V  +H ++K  E+ 
Sbjct: 455 WMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKD 514

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+++ +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  GR  R  
Sbjct: 515 DIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLRGRVGRGS 570

Query: 683 N-SKVILYAD 691
           + S  IL A+
Sbjct: 571 SASYCILVAN 580


>gi|227497408|ref|ZP_03927640.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
 gi|226833084|gb|EEH65467.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
          Length = 557

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TKR A  + E L  R      +H ++    R + +R  R GK DVLV  ++  
Sbjct: 313 RTIIFTRTKRTAARVAEDLGSRGFATAALHGDLGQGAREQALRAFRHGKVDVLVATDVAA 372

Query: 644 EGLDI 648
            G+D+
Sbjct: 373 RGIDV 377


>gi|160940589|ref|ZP_02087933.1| hypothetical protein CLOBOL_05484 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436549|gb|EDP14316.1| hypothetical protein CLOBOL_05484 [Clostridium bolteae ATCC
           BAA-613]
          Length = 490

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 5/98 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   T+ M + L + L    I    +H +++  ER++ +   R G F  L+  ++  
Sbjct: 251 RAMIFCGTREMVQVLFQKLRRDRIFCGMIHGDMEQKERLKNVDAFRRGGFRYLIATDVAA 310

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            G+D  + GLV   D     F   + + +  IGR  RN
Sbjct: 311 RGIDFEDVGLVVNYD-----FPMGRETYVHRIGRTGRN 343


>gi|156549439|ref|XP_001603249.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 795

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 586 LLTVLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           LL  +TK++ AE+L   L  +   V  +H ++  +ER ++I   +     +LV  ++   
Sbjct: 504 LLIFVTKKLNAEELANNLKLKEYEVLLLHGDMDQVERNKVITSFKKKTVSILVATDVAAR 563

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           GLDIP    V   D  ++  + + T  I   GRA 
Sbjct: 564 GLDIPHIRTVINYDVARD--IDTHTHRIGRTGRAG 596


>gi|145295117|ref|YP_001137938.1| hypothetical protein cgR_1060 [Corynebacterium glutamicum R]
 gi|140845037|dbj|BAF54036.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1214

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           A++P  +T   +  S    I   R      L +    +  +   C   +   E  + +  
Sbjct: 75  AWLPSWETLPHERLSPGVDIVGKRAQVLNHLGDLKVVVAAARAFCQPVLKDAEGRAPLT- 133

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            LK G   +   L + LV + YK  D+   RG F   G  ++IFP+ L D   RV  +G+
Sbjct: 134 -LKEGAEFDFSALTTELVFRAYKHVDMVAKRGEFATRGGILDIFPTTL-DYPVRVEFWGD 191

Query: 356 DIEEISEF 363
           ++ +I +F
Sbjct: 192 EVSDIRQF 199


>gi|70608133|ref|NP_084426.2| probable ATP-dependent RNA helicase DHX58 [Mus musculus]
 gi|123239708|emb|CAM22908.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Mus musculus]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+I++ R G   +LV  ++  EGLDI +C +V      + G L ++ S++Q  GRA
Sbjct: 422 EVIQEFRDGILSLLVATSVAEEGLDIAQCNVVV-----RYGLLTNEISMVQARGRA 472


>gi|73668740|ref|YP_304755.1| Hef nuclease [Methanosarcina barkeri str. Fusaro]
 gi|72395902|gb|AAZ70175.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina barkeri
           str. Fusaro]
          Length = 938

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++E++   R G+++VLV  ++  EGLDIP   LV   +      + S+   IQ  GR  
Sbjct: 422 QQVEVLDKFRAGEYNVLVATSVAEEGLDIPSTDLVLFYEP-----IPSEIRSIQRKGRTG 476

Query: 680 RNVNSKVIL 688
           R    +VI+
Sbjct: 477 RQHKGRVII 485


>gi|15677628|ref|NP_274787.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis MC58]
 gi|7227042|gb|AAF42127.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis MC58]
 gi|316984386|gb|EFV63359.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis H44/76]
 gi|325139672|gb|EGC62210.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis CU385]
 gi|325200852|gb|ADY96307.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis H44/76]
          Length = 680

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++     G  +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPELNIGL--VHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|19552188|ref|NP_600190.1| transcription-repair coupling factor [Corynebacterium glutamicum
           ATCC 13032]
          Length = 1214

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           A++P  +T   +  S    I   R      L +    +  +   C   +   E  + +  
Sbjct: 75  AWLPSWETLPHERLSPGVDIVGKRAQVLNHLGDLKVVVAAARAFCQPVLKDAEGRAPLT- 133

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            LK G   +   L + LV + YK  D+   RG F   G  ++IFP+ L D   RV  +G+
Sbjct: 134 -LKEGAEFDFSALTTELVFRAYKHVDMVAKRGEFATRGGILDIFPTTL-DYPVRVEFWGD 191

Query: 356 DIEEISEF 363
           ++ +I +F
Sbjct: 192 EVSDIRQF 199


>gi|330813838|ref|YP_004358077.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486933|gb|AEA81338.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 558

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK  A+ L + L +       +H  ++  +R ++I   R  K  VLV  ++   G
Sbjct: 243 LVFVKTKHNAKKLAKNLEKEGFESDSLHGNLRQNKRNQVIAKFRANKIHVLVATDIAARG 302

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDIP    V   D  ++         I  +GR  R
Sbjct: 303 LDIPHIEHVVNFDLPQQA-----EDFIHRMGRTGR 332


>gi|312902137|ref|ZP_07761397.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0470]
 gi|311290801|gb|EFQ69357.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0470]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 521 LRPTTIVVSATPGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYD 573
           L+P  + ++ATP    L      E    II E    P G +  P+E R  R  Q++ V +
Sbjct: 400 LKPDVLFMTATPIPRTLAITAYGEMDVSIIDEM---PAGRI--PIETRWIRPPQLDTVLE 454

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDL---------TEYLYERNIRVRYMHSEVKTLERI 622
             E  LA      I+  ++ +  A D+          +  Y    +V  +H ++K  E+ 
Sbjct: 455 WMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKD 514

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+++ +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  GR  R  
Sbjct: 515 DIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLRGRVGRGS 570

Query: 683 N-SKVILYAD 691
           + S  IL A+
Sbjct: 571 SASYCILVAN 580


>gi|308173534|ref|YP_003920239.1| primosomal replication factor Y [Bacillus amyloliquefaciens DSM 7]
 gi|307606398|emb|CBI42769.1| primosomal replication factor Y (primosomal protein N') [Bacillus
           amyloliquefaciens DSM 7]
          Length = 803

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 15/102 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+R+ E+LT+ L +     R +  +V T  R     +++     GK D+L+G  ++ +GL
Sbjct: 563 TQRVEEELTKVLPQ----ARVIRMDVDTTSRKGAHEKLLSAFGEGKADILLGTQMIAKGL 618

Query: 647 DIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           D P   LV +L AD    +       ++   L Q  GRA R+
Sbjct: 619 DFPNVTLVGVLSADTTLHIPDFRAAEKTFQLLTQVSGRAGRH 660


>gi|307288878|ref|ZP_07568851.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0109]
 gi|306500150|gb|EFM69494.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0109]
 gi|315164405|gb|EFU08422.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1302]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 521 LRPTTIVVSATPGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYD 573
           L+P  + ++ATP    L      E    II E    P G +  P+E R  R  Q++ V +
Sbjct: 400 LKPDVLFMTATPIPRTLAITAYGEMDVSIIDEM---PAGRI--PIETRWIRPPQLDTVLE 454

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDL---------TEYLYERNIRVRYMHSEVKTLERI 622
             E  LA      I+  ++ +  A D+          +  Y    +V  +H ++K  E+ 
Sbjct: 455 WMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKD 514

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+++ +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  GR  R  
Sbjct: 515 DIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLRGRVGRGS 570

Query: 683 N-SKVILYAD 691
           + S  IL A+
Sbjct: 571 SASYCILVAN 580


>gi|262047918|ref|ZP_06020863.1| phage helicase [Lactobacillus crispatus MV-3A-US]
 gi|260571771|gb|EEX28347.1| phage helicase [Lactobacillus crispatus MV-3A-US]
          Length = 449

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 605 RNIRVRYMHSEVKT--LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           RN  +  +H + KT   +R  I+   + GK  VL  ++L+ EG ++P+C  V +L
Sbjct: 236 RNAGINAVHVDAKTPSQKRENIMGSFKQGKIKVLCNVDLVSEGFNVPDCSCVVLL 290


>gi|197124848|ref|YP_002136799.1| transcription-repair coupling factor [Anaeromyxobacter sp. K]
 gi|196174697|gb|ACG75670.1| transcription-repair coupling factor [Anaeromyxobacter sp. K]
          Length = 1241

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 20/179 (11%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGN 355
           L  G  V+++ L + LV   + R  +    GTF V G  ++++ P+  + V  R+  FG+
Sbjct: 154 LGKGVEVDREALAAKLVLLGFARTPLVEDPGTFAVRGGIVDLWSPADPKPV--RLEFFGD 211

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +IE    F P T +   +VE + +  +   +        A   ++E              
Sbjct: 212 EIESCRAFDPSTQRSEGDVEEVLLCPSREALFTEEGKEAAKTAVRE-------------- 257

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
              A+R+ +  +   E+L+   +          L G +PG    TLF+Y+P  + ++VD
Sbjct: 258 --AAERVNRPTSRVREVLDAIDAGTPFFGLEALLPGFHPGG-LGTLFDYLPAGAAVYVD 313


>gi|187734559|ref|YP_001876671.1| primosomal protein N' [Akkermansia muciniphila ATCC BAA-835]
 gi|187424611|gb|ACD03890.1| primosomal protein N' [Akkermansia muciniphila ATCC BAA-835]
          Length = 738

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 8/73 (10%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA-------DKEGFLRSKTSLIQTIG 676
           I+   R  K D+L+G  ++ +GLD P   LV +L+A       D     R+   L Q  G
Sbjct: 534 ILNQFRAHKIDILLGTQMIAKGLDFPNVTLVGVLNADLGLHIPDPRAGERTFQLLTQVAG 593

Query: 677 RAAR-NVNSKVIL 688
           RA R +++ +VI+
Sbjct: 594 RAGRGDLSGEVII 606


>gi|154685987|ref|YP_001421148.1| primosome assembly protein PriA [Bacillus amyloliquefaciens FZB42]
 gi|154351838|gb|ABS73917.1| PriA [Bacillus amyloliquefaciens FZB42]
          Length = 803

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 15/102 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+R+ E+LT+ L +     R +  +V T  R     +++     GK D+L+G  ++ +GL
Sbjct: 563 TQRVEEELTKVLPQ----ARVIRMDVDTTSRKGAHEKLLSAFGEGKADILLGTQMIAKGL 618

Query: 647 DIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           D P   LV +L AD    +       ++   L Q  GRA R+
Sbjct: 619 DFPNVTLVGVLSADTTLHIPDFRAAEKTFQLLTQVSGRAGRH 660


>gi|254360948|ref|ZP_04977094.1| helicase RecG [Mannheimia haemolytica PHL213]
 gi|153092427|gb|EDN73490.1| helicase RecG [Mannheimia haemolytica PHL213]
          Length = 693

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL   L   ++R+  +H  +K  E+  I+ + +    D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLQRAL--PDLRIGLVHGRLKPQEKQAIMAEFKAANLDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I ++++ G       L Q  GR  R   +   V++Y   + K
Sbjct: 567 IENSERLGL----AQLHQLRGRVGRGATASHCVLMYKPPLGK 604


>gi|146197807|dbj|BAF57619.1| DEAD box polypeptide 19 protein [Dugesia japonica]
          Length = 434

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           +++MA  L + L   +     +  E+  LER   I D R GK  VL+  NL   G+DIP+
Sbjct: 301 SRKMACYLQKALERDSHLSSLLTGELDVLERQRQIDDFRNGKSRVLIATNLCSRGIDIPQ 360

Query: 651 CGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
             L+   D    K+G    +T L   IGR+ R
Sbjct: 361 VNLIINWDMPKTKDGKPDCETYL-HRIGRSGR 391


>gi|148709519|gb|EDL41465.1| mCG1045042 [Mus musculus]
          Length = 346

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 36/64 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+   G   VL+  +LL  G+D+ +
Sbjct: 243 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFCSGSSRVLIPTDLLARGIDVQQ 302

Query: 651 CGLV 654
             L+
Sbjct: 303 VSLI 306


>gi|20807951|ref|NP_623122.1| primosomal protein N [Thermoanaerobacter tengcongensis MB4]
 gi|20516521|gb|AAM24726.1| Primosomal protein N (replication factor Y) - superfamily II
           helicase [Thermoanaerobacter tengcongensis MB4]
          Length = 732

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 15/106 (14%)

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLL 642
           + + T+R+  D+ ++  E     R +  +V T  R     +I  + + GK D+L+G  ++
Sbjct: 487 MGIGTERVEMDIKKFFPE----ARVLRMDVDTTRRKGSHEKIFYEFKNGKADILIGTQMI 542

Query: 643 REGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
            +G DIP   LV ++ AD    L       R+   L Q  GRA R 
Sbjct: 543 SKGFDIPNVTLVGVILADITLNLPDFRSSERTFQLLTQVAGRAGRG 588



 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 14/121 (11%)

Query: 106 LARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQM---QTDYHP--SGDQPAAIAQL 160
           L +++ +D      G I    +   I  + ++I+ FQ+   +  + P  + +Q  A+ ++
Sbjct: 151 LVKILNTDY-----GTIRALEKKGYIEVYEEEISRFQVRDVEKTFPPILTEEQKRAVEEV 205

Query: 161 LKGIHSRE-KVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFKNF 216
            K I S +    LL GVTGSGKT    K+IE    + + AIV+ P   L  Q    F + 
Sbjct: 206 KKSIFSGQPDAYLLFGVTGSGKTEVYLKLIEETVKIGKSAIVLVPEIALTPQTIERFVSR 265

Query: 217 F 217
           F
Sbjct: 266 F 266


>gi|39939200|ref|NP_950966.1| superfamily II DNA/RNA helicase [Onion yellows phytoplasma OY-M]
 gi|39722309|dbj|BAD04799.1| superfamily II DNA and RNA helicase [Onion yellows phytoplasma
           OY-M]
          Length = 552

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++T YL ++      +H ++K  +R  ++ + R GK  +L+  ++   GLDI +
Sbjct: 251 TKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAARGLDISD 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +V   D   E         +  IGR  R
Sbjct: 311 IKMVINYDLPHED-----EVYVHRIGRTGR 335


>gi|218767626|ref|YP_002342138.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis Z2491]
 gi|121051634|emb|CAM07935.1| putative DNA helicase [Neisseria meningitidis Z2491]
 gi|319409884|emb|CBY90199.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis WUE 2594]
          Length = 680

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++     G  +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPELNIGL--VHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|117925364|ref|YP_865981.1| type III restriction enzyme, res subunit [Magnetococcus sp. MC-1]
 gi|117609120|gb|ABK44575.1| type III restriction enzyme, res subunit [Magnetococcus sp. MC-1]
          Length = 560

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A+++T+     ++    +H E+ T ER   +     G   V+V + +L EG D P    V
Sbjct: 249 AQNVTDAFNNADVEAVMVHGELSTGERKAALARFEKGSAMVVVNVAVLTEGYDHPPTSCV 308

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +L          K+++IQ +GR  R V+
Sbjct: 309 VLLRPSSY-----KSTMIQMVGRGLRTVD 332


>gi|324501737|gb|ADY40770.1| ATP-dependent RNA helicase DDX58 [Ascaris suum]
          Length = 1050

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 32/141 (22%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNI---------------RVRYMHSEVKTLERIEIIRDL 628
           R ++ V T+ +AE L+E+L E  I               +      +    +R+ +I D 
Sbjct: 697 RTIIFVTTRMLAEKLSEHLNECRIIDGGPRAIGFVTSSNQSSSFSGQTAAEQRL-MIEDF 755

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G   VLV  ++  EGLDI  C L  I+  +  G   S+ SLIQ  GR AR  NS+ IL
Sbjct: 756 NTGLRKVLVATSVAEEGLDISACNL--IIKYNNTG---SERSLIQRRGR-ARAKNSRSIL 809

Query: 689 YADTITKSIQLAIDETTRRRE 709
                     LA+D +  +RE
Sbjct: 810 ----------LALDGSIEKRE 820


>gi|291618455|ref|YP_003521197.1| SrmB [Pantoea ananatis LMG 20103]
 gi|291153485|gb|ADD78069.1| SrmB [Pantoea ananatis LMG 20103]
          Length = 442

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L  +L++  IR  Y+  E+   +R E I+ L  G+ +VLV  ++  
Sbjct: 250 RSIVFVRKRERLHELVSWLHDAGIRTSYLEGEMVQAKRNEAIKRLVEGRVNVLVATDIAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+ +   V   D       R+  + +  IGR  R
Sbjct: 310 RGIDVDDVSHVINFD-----MPRTADTYLHRIGRTGR 341


>gi|269137456|ref|YP_003294156.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda EIB202]
 gi|267983116|gb|ACY82945.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda EIB202]
 gi|304557530|gb|ADM40194.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda FL6-60]
          Length = 424

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 18/122 (14%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   ED+  +L     RV  +  +V   +R+ I+ D   G  D+LV  ++  
Sbjct: 253 RCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVPQKKRLRILEDFTKGHIDILVATDVAA 312

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            GL IP    V   D   D E +       +  IGR  R         A    KSI LA 
Sbjct: 313 RGLHIPAVTHVFNYDLPDDCEDY-------VHRIGRTGR---------AGASGKSISLAC 356

Query: 702 DE 703
           +E
Sbjct: 357 EE 358


>gi|251781045|ref|ZP_04823965.1| type III restriction enzyme, res subunit [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243085360|gb|EES51250.1| type III restriction enzyme, res subunit [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 538

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A +L +      I  + + S V ++ER + + D + GKF +LV + +L  G D  E   V
Sbjct: 242 ATNLAKCFNVNGISAKSIDSTVDSIEREQTLNDFKEGKFKILVNVAILTTGFDFEELECV 301

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +    K     SK    Q IGR  R  + K
Sbjct: 302 IMARPTK-----SKILYTQCIGRGLRIADGK 327


>gi|237739321|ref|ZP_04569802.1| DNA/RNA helicase [Fusobacterium sp. 2_1_31]
 gi|229422929|gb|EEO37976.1| DNA/RNA helicase [Fusobacterium sp. 2_1_31]
          Length = 942

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           + L  L+ V     A+ L E   E+ ++   + SE    ER E IR L  G+ + ++ ++
Sbjct: 434 EKLHCLVFVSKVEEAKILVEKFLEQGVKALALSSENSDNEREEAIRKLEEGEIEYIISVD 493

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTS---LIQTIGRAAR 680
           +  EG+DIP C    IL       LR  TS    IQ +GR  R
Sbjct: 494 IFNEGVDIP-CVNQVIL-------LRPTTSAIVYIQQLGRGLR 528


>gi|224057083|ref|XP_002193182.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Taeniopygia
           guttata]
          Length = 622

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 6/97 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +L+ V  K  A+ L++ +++   ++   MHSE   +ER +I++ L   K++V+V   +L 
Sbjct: 450 VLVFVDCKLGADLLSDAVHKITGLQCTAMHSEKSQVERTDILQGLLQEKYEVIVSTGVLG 509

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+    LV   D        S    +  +GRA R
Sbjct: 510 RGLDLVNVKLVVNFDMPS-----SMDEYVHQVGRAGR 541


>gi|224139932|ref|XP_002323346.1| predicted protein [Populus trichocarpa]
 gi|222867976|gb|EEF05107.1| predicted protein [Populus trichocarpa]
          Length = 611

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L   L+        +H +    ER   +R  + GK  +LV  ++   G
Sbjct: 418 LVFVETKKGADSLEHLLHVNGFPATSIHGDRTQQEREMALRSFKSGKTPILVATDVAARG 477

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LDIP    V   D   +         +  IGR  R  N+ +
Sbjct: 478 LDIPHVAHVVNFDLPND-----IDDYVHRIGRTGRAGNTGL 513


>gi|212694348|ref|ZP_03302476.1| hypothetical protein BACDOR_03874 [Bacteroides dorei DSM 17855]
 gi|212662849|gb|EEB23423.1| hypothetical protein BACDOR_03874 [Bacteroides dorei DSM 17855]
          Length = 759

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R  +E +Y  +   A  G + ++  ++   A  + EY     +    + S+   +ER  +
Sbjct: 207 RPGIERLYRSVRQFAS-GKKGMVYAISIEHARRIAEYYSRWGVNAVAVDSKTPAMERKRM 265

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + R GK +VLV +++  EG D P+   V +          S    +Q +GR  R    
Sbjct: 266 VEEFRHGKIEVLVNVDVFSEGFDCPDVEFVQLARPTL-----SLAKYLQQVGRGLRRSEG 320

Query: 685 K 685
           K
Sbjct: 321 K 321


>gi|148670597|gb|EDL02544.1| DNA segment, Chr 11, Lothar Hennighausen 2, expressed, isoform
           CRA_c [Mus musculus]
          Length = 533

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+I++ R G   +LV  ++  EGLDI +C +V      + G L ++ S++Q  GRA
Sbjct: 422 EVIQEFRDGILSLLVATSVAEEGLDIAQCNVVV-----RYGLLTNEISMVQARGRA 472


>gi|107103467|ref|ZP_01367385.1| hypothetical protein PaerPA_01004537 [Pseudomonas aeruginosa PACS2]
          Length = 449

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 10/144 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  E+L   L  + I    +H +     R+  ++  + G+ D+LV  ++   GLDI E
Sbjct: 253 TRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAARGLDIEE 312

Query: 651 CGLVAILDAD--KEGFLRSKTSLIQTIGRAARNVNSKVILYADTI--TKSIQLAIDETTR 706
             LV   D     E ++      I   GRA  +  +  ++ AD +    +I+  I +T +
Sbjct: 313 MPLVVNFDLPIVAEDYVHR----IGRTGRAGASGQAVSLVCADEVELLAAIETLIGQTLQ 368

Query: 707 RREKQLEHNKKHNINPQSVKEKIM 730
           RRE+  +   +H + PQ+    ++
Sbjct: 369 RREEP-DFEPEHRV-PQTAPGGVV 390


>gi|119945261|ref|YP_942941.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119863865|gb|ABM03342.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 441

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 28/158 (17%)

Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAAQQGL---------- 583
           EQ Q +  E       L++ PVEI+     A T V+ V+  +N   +  L          
Sbjct: 216 EQVQALTQE-------LLNDPVEIQLQSSDASTLVQRVF-TVNKGQKTALLAHLIKQHQW 267

Query: 584 -RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + L+ V  K     L E L +R I     H +     R  ++   + G+ DVL+  ++ 
Sbjct: 268 QQALIFVNAKNSCNHLAEKLSKRGISAEVFHGDKGQGARSRVLDAFKAGEIDVLIATDIA 327

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             GLDI +  +V   D       RS +  +  IGR+ R
Sbjct: 328 ARGLDIEKLPVVINFD-----LPRSPSDYMHRIGRSGR 360


>gi|15599145|ref|NP_252639.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|218889767|ref|YP_002438631.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|9950138|gb|AAG07337.1|AE004813_4 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|218769990|emb|CAW25752.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 449

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 10/144 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  E+L   L  + I    +H +     R+  ++  + G+ D+LV  ++   GLDI E
Sbjct: 253 TRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAARGLDIEE 312

Query: 651 CGLVAILDAD--KEGFLRSKTSLIQTIGRAARNVNSKVILYADTI--TKSIQLAIDETTR 706
             LV   D     E ++      I   GRA  +  +  ++ AD +    +I+  I +T +
Sbjct: 313 MPLVVNFDLPIVAEDYVHR----IGRTGRAGASGQAVSLVCADEVELLAAIETLIGQTLQ 368

Query: 707 RREKQLEHNKKHNINPQSVKEKIM 730
           RRE+  +   +H + PQ+    ++
Sbjct: 369 RREEP-DFEPEHRV-PQTAPGGVV 390


>gi|74142314|dbj|BAE31919.1| unnamed protein product [Mus musculus]
          Length = 672

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+I++ R G   +LV  ++  EGLDI +C +V      + G L ++ S++Q  GRA
Sbjct: 422 EVIQEFRDGILSLLVATSVAEEGLDIAQCNVVV-----RYGLLTNEISMVQARGRA 472


>gi|26554258|ref|NP_758192.1| ATP-dependent RNA helicase [Mycoplasma penetrans HF-2]
 gi|26454267|dbj|BAC44596.1| ATP-dependent RNA helicase [Mycoplasma penetrans HF-2]
          Length = 457

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  + L +Y+Y+  I V  +HS ++  +R  I R+++    ++L+  +L   G+DI  
Sbjct: 250 TKKEVDALYDYIYQNKIPVLKLHSGLENRQRKNIFREIKENNINLLIATDLASRGVDIEG 309

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              V   D  KE         +   GR+ R
Sbjct: 310 ASHVISYDLPKEDLW-----YVHRAGRSGR 334


>gi|16801004|ref|NP_471272.1| primosome assembly protein PriA [Listeria innocua Clip11262]
 gi|16414439|emb|CAC97168.1| priA [Listeria innocua Clip11262]
          Length = 797

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     ++++  R  + D+L+G  ++ +GLD P
Sbjct: 558 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLKSFRNHEADILLGTQMIAKGLDFP 616

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 617 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 655


>gi|319944239|ref|ZP_08018515.1| DNA helicase RecG [Lautropia mirabilis ATCC 51599]
 gi|319742534|gb|EFV94945.1| DNA helicase RecG [Lautropia mirabilis ATCC 51599]
          Length = 769

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R   +H  +   E+ E++   + G+ D+LV   ++  G+D+P   L+ I  A++ G  
Sbjct: 593 QVRTGLVHGRLSAAEKDEVMAAFKAGELDLLVATTVIEVGVDVPNASLMVIEHAERFGL- 651

Query: 666 RSKTSLIQTIGRAARNVNSK--VILY 689
              + L Q  GR  R       V+LY
Sbjct: 652 ---SQLHQLRGRVGRGTAQSLCVLLY 674


>gi|315151044|gb|EFT95060.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0012]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 521 LRPTTIVVSATPGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYD 573
           L+P  + ++ATP    L      E    II E    P G +  P+E R  R  Q++ V +
Sbjct: 400 LKPDVLFMTATPIPRTLAITAYGEMDVSIIDEM---PAGRI--PIETRWIRPPQLDTVLE 454

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDL---------TEYLYERNIRVRYMHSEVKTLERI 622
             E  LA      I+  ++ +  A D+          +  Y    +V  +H ++K  E+ 
Sbjct: 455 WMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKD 514

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+++ +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  GR  R  
Sbjct: 515 DIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLRGRVGRGS 570

Query: 683 N-SKVILYAD 691
           + S  IL A+
Sbjct: 571 SASYCILVAN 580


>gi|294083795|ref|YP_003550552.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663367|gb|ADE38468.1| DEAD/DEAH box helicase domain protein [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 696

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V   H ++K  ER E ++  R G   +LV   ++  G+D+PE  ++ I  A++ G    
Sbjct: 518 KVALAHGKMKAPERDEAMQAFRDGSAQLLVATTVVEVGVDVPEASIMIIEHAERFGL--- 574

Query: 668 KTSLIQTIGRAARNVN--SKVILYADTITKS 696
              L Q  GR  R  +  S +++YA  I+ +
Sbjct: 575 -AQLHQLRGRVGRGADKSSCILVYAPPISDT 604


>gi|269137385|ref|YP_003294085.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda EIB202]
 gi|267983045|gb|ACY82874.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda EIB202]
 gi|304557486|gb|ADM40150.1| ATP-dependent DNA helicase RecG [Edwardsiella tarda FL6-60]
          Length = 693

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           +R+  +H  +K  ++  ++   + G+ D+LV   ++  G+D+P   L+ I + ++ G   
Sbjct: 518 LRIALVHGRMKAADKQRVMTQFKAGEVDLLVATTVIEVGVDVPNASLMIIENPERLGL-- 575

Query: 667 SKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
               L Q  GR  R   +   V+LY   ++++ Q
Sbjct: 576 --AQLHQLRGRVGRGAIASHCVLLYKAPLSQTAQ 607


>gi|187778894|ref|ZP_02995367.1| hypothetical protein CLOSPO_02489 [Clostridium sporogenes ATCC
           15579]
 gi|187772519|gb|EDU36321.1| hypothetical protein CLOSPO_02489 [Clostridium sporogenes ATCC
           15579]
          Length = 735

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT---FTMAKVIEAMQRPAIVMAPNKILA 206
           +GDQ  A+ ++L   +S  K+ L+ GVTGSGKT     + K +    + +I++ P   L 
Sbjct: 202 NGDQSLALYRIL---NSNRKLFLIHGVTGSGKTEIYMHLVKKLMEKDKDSIILVPEISLT 258

Query: 207 AQLYSEFKNFFPHN 220
            Q+   FK  F  N
Sbjct: 259 PQMVERFKGRFGKN 272


>gi|170759925|ref|YP_001786004.1| restriction/helicase domain-containing protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169406914|gb|ACA55325.1| restriction/helicase domain protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 988

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 15/125 (12%)

Query: 564 ARTQVEDVYDEINLAAQQGLRI--LLTVLTKRMAEDLTEYLYERNIRVRYMHSEV----- 616
           A  +V+ + D+IN     G R+  L+    K+ A++L++    +  +   +  E      
Sbjct: 448 AEERVKHIIDKINFYGYCGERVKGLIFCSDKKEAKELSDIFNTKGYKTVALTGESSQEER 507

Query: 617 -KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            K +ER+E  +D  L   D +  +++  EG+DIP    V +L   K     S    +Q +
Sbjct: 508 EKAIERLE--QDETLNSLDYIFTVDIFNEGVDIPSVNQVVMLRPTK-----SSIIFVQQL 560

Query: 676 GRAAR 680
           GR  R
Sbjct: 561 GRGLR 565


>gi|156064127|ref|XP_001597985.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|160380609|sp|A7E449|DBP2_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp2
 gi|154690933|gb|EDN90671.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 572

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  ++V  ++  
Sbjct: 398 KILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVAS 457

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+     V   D     +  +    I  IGR  R
Sbjct: 458 RGIDVRNITHVFNYD-----YPNNSEDYIHRIGRTGR 489


>gi|145524966|ref|XP_001448305.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415849|emb|CAK80908.1| unnamed protein product [Paramecium tetraurelia]
          Length = 475

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 586 LLTVLTKRMAEDLTEY-LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L    K++     EY L +  I  RY+H +++  +R  I+++ R G    L+  NL   
Sbjct: 340 VLVFCQKKIDTQKLEYKLSQHGINARYLHGDLRQNQRDFIMQEFRDGSAKCLITTNLASR 399

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           GLD+ +  +V   D     F  +    I  IGR  R
Sbjct: 400 GLDVSDVDIVINYD-----FPENIEDYIHRIGRTGR 430


>gi|152986565|ref|YP_001346544.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150961723|gb|ABR83748.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 447

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 10/144 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  E+L   L  + I    +H +     R+  ++  + G+ D+LV  ++   GLDI E
Sbjct: 253 TRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAARGLDIEE 312

Query: 651 CGLVAILDAD--KEGFLRSKTSLIQTIGRAARNVNSKVILYADTI--TKSIQLAIDETTR 706
             LV   D     E ++      I   GRA     +  ++ AD +    +I+  I +T +
Sbjct: 313 MPLVVNFDLPIVAEDYVHR----IGRTGRAGATGQALSLVCADEVELLAAIETLIGQTLQ 368

Query: 707 RREKQLEHNKKHNINPQSVKEKIM 730
           RRE+  +   +H + PQ+    ++
Sbjct: 369 RREEP-DFEPEHRV-PQTAPGGVV 390


>gi|115453811|ref|NP_001050506.1| Os03g0566800 [Oryza sativa Japonica Group]
 gi|122246919|sp|Q10I26|RH34_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 34
 gi|13957631|gb|AAK50586.1|AC084404_11 putative translation initiation factor [Oryza sativa Japonica
           Group]
 gi|108709369|gb|ABF97164.1| Eukaryotic initiation factor 4A-3, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113548977|dbj|BAF12420.1| Os03g0566800 [Oryza sativa Japonica Group]
          Length = 404

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R
Sbjct: 263 DLYDTLTIT-----QAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFR 317

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 318 SGATRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 363


>gi|325685888|gb|EGD27954.1| primosome assembly protein PriA [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 793

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 15/106 (14%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINL 641
            L   T+++ E+L E   +  I    +  +V T  R     +I+     G+ D+L+G  +
Sbjct: 549 FLGTGTQKVQEELAELFPQAKI----LRMDVDTTRRKGSYDKILTSFGQGEADILLGTQM 604

Query: 642 LREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           + +GLD P   LV +++AD   +L       R+   L Q  GRA R
Sbjct: 605 IAKGLDFPNVTLVGVINADTGLWLPDYNASERTFELLTQVAGRAGR 650


>gi|315167213|gb|EFU11230.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX1341]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 521 LRPTTIVVSATPGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYD 573
           L+P  + ++ATP    L      E    II E    P G +  P+E R  R  Q++ V +
Sbjct: 400 LKPDVLFMTATPIPRTLAITAYGEMDVSIIDEM---PAGRI--PIETRWIRPPQLDTVLE 454

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDL---------TEYLYERNIRVRYMHSEVKTLERI 622
             E  LA      I+  ++ +  A D+          +  Y    +V  +H ++K  E+ 
Sbjct: 455 WMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKD 514

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+++ +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  GR  R  
Sbjct: 515 DIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLRGRVGRGS 570

Query: 683 N-SKVILYAD 691
           + S  IL A+
Sbjct: 571 SASYCILVAN 580


>gi|312794621|ref|YP_004027544.1| type III restriction protein res subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181761|gb|ADQ41931.1| type III restriction protein res subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 890

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK---TLERIEIIRDLRLGKFDVLVGIN 640
           R L    ++  AE + EY  +  ++   ++S  +      R + I  L+ G+ +V+  ++
Sbjct: 506 RTLAFCSSRNHAEFMAEYFNQNGVKSCAVYSGEQGKNAAFRGQAIEKLKKGEINVIFTVD 565

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +  EG+DIPE  +V  L   +     S T  +Q +GR  R    K  L
Sbjct: 566 MFNEGVDIPEIDMVMFLRPTE-----SPTVFLQQLGRGLRKAKDKYYL 608


>gi|209418026|gb|ACI46551.1| RE58551p [Drosophila melanogaster]
          Length = 609

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +QGL+  +L+ V +K  A+ L E L    I V  +H+E    +R   ++  R G   VL+
Sbjct: 377 RQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIWVLI 436

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+  G+D     LV   D     F  +  S I  IGR  R
Sbjct: 437 CTELMGRGIDFKGVNLVINYD-----FPPTTISYIHRIGRTGR 474


>gi|150025896|ref|YP_001296722.1| primosomal protein N' [Flavobacterium psychrophilum JIP02/86]
 gi|149772437|emb|CAL43919.1| Primosomal protein N' [Flavobacterium psychrophilum JIP02/86]
          Length = 816

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           ++I   +  + D+LVG  +L +GLD     LV IL+AD          F RS   + Q  
Sbjct: 610 KLIGSFKNREIDILVGTQMLAKGLDFDNVSLVGILNADSMLYFPDFRAFERSFQMMTQVS 669

Query: 676 GRAAR-NVNSKVIL 688
           GRA R +   KVI+
Sbjct: 670 GRAGRSDKKGKVII 683


>gi|126342775|ref|XP_001368413.1| PREDICTED: similar to kinesin family member 4A [Monodelphis
           domestica]
          Length = 1231

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 61/144 (42%), Gaps = 15/144 (10%)

Query: 147 YHPSGDQPA----AIAQLLKGIHSREKVQLLL-GVTGSGKTFTMAKVIEAMQ--RPAIVM 199
           + PS +Q      A+A L+KGI       +L  G TGSGKTF+M     A Q   P + +
Sbjct: 56  FDPSAEQEEVFNLAVAPLIKGIFQGYNATVLAYGQTGSGKTFSMGSAYTAAQENEPTVGV 115

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYF--VSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
            P  I   QL   F         E+   VSY + Y  E  +       EK S IN + D 
Sbjct: 116 IPRVI---QLL--FTEMDKKVDFEFLLKVSYLEIYN-EEILDLLSPSREKSSQINIREDP 169

Query: 258 MRHSATRSLLERNDCIVVSSVSCI 281
                   L E+   + + +VSC+
Sbjct: 170 KEGIKIIGLTEKTVSLAMDTVSCL 193


>gi|90406882|ref|ZP_01215073.1| excinuclease ABC subunit B [Psychromonas sp. CNPT3]
 gi|90311924|gb|EAS40018.1| excinuclease ABC subunit B [Psychromonas sp. CNPT3]
          Length = 109

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-----PILLEDAATTNISIDAQ 751
           +Q AI  TT+RRE Q ++N  +NI PQ + + + +++      P       +     +A 
Sbjct: 1   MQKAIHITTQRRELQHQYNIDNNIVPQGLNKAVDDILQLGKRSPKKSRKGTSELWKKEAT 60

Query: 752 QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            ++  K   K  ++ L KQM + A +L FE+AA++RDEI  L++
Sbjct: 61  PVANEKTLLKQMVR-LEKQMFVHAKDLEFEKAAQLRDEISELQA 103


>gi|116495978|ref|YP_807712.1| transcription-repair coupling factor [Lactobacillus casei ATCC 334]
 gi|116106128|gb|ABJ71270.1| transcription-repair coupling factor [Lactobacillus casei ATCC 334]
          Length = 1174

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 42/232 (18%), Positives = 98/232 (42%), Gaps = 13/232 (5%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
            L+ G++GS KT     +++   +  +++  N+  A +L ++  +      V      YD
Sbjct: 25  HLVTGLSGSAKTVFFGALLQQRPQQILIVENNRFHADELAADLSSLLGDAMV------YD 78

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
           +  P   V   +  +    + N++I+ +    +     +   IV S       + S   +
Sbjct: 79  F--PVEDVLAAEVAVSSPETRNDRINALTFIQSG----KPGIIVTSLAGYKRLLPSPADW 132

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +   + + +   ++ + +   LV   Y+R  +    G F + G  I+++P + +D   R+
Sbjct: 133 AASELAIDMTSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDVYPLNQDD-PIRI 191

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            +F  +I+ I  F   T + ++ ++ I I   +  V     L  A + I ++
Sbjct: 192 ELFDTEIDSIRSFDIATQRSLQKLQQITIAPATDMVATDQVLAAAGERITKQ 243



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y H ++   +   +I D   G +DVLV   ++  G+D+P    + I +AD  G     
Sbjct: 856 VGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGL---- 911

Query: 669 TSLIQTIGRAARN 681
           + L Q  GR  R+
Sbjct: 912 SQLYQLRGRIGRS 924


>gi|327405753|ref|YP_004346591.1| DEAD-like helicase [Fluviicola taffensis DSM 16823]
 gi|327321261|gb|AEA45753.1| DEAD-like helicase [Fluviicola taffensis DSM 16823]
          Length = 653

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D+++ + + +EG D P C     +     G+  S T +IQ IGRA R+ N+K+
Sbjct: 341 DIIIALGMAKEGFDWPYCQHALTI-----GYRGSLTEIIQIIGRATRDSNNKI 388


>gi|325204743|gb|ADZ00197.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M01-240355]
          Length = 680

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++     G  +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPELNIGL--VHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|322821755|gb|EFZ27990.1| RNA helicase, putative [Trypanosoma cruzi]
          Length = 553

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +    ++L + +  + + +  M+S++   ER E I + RLGK  V++  +LL  
Sbjct: 366 VLIFVQSIERTKELYDEIRCQGLNIAVMNSKMSHEERDETIMNFRLGKLWVIITTDLLSR 425

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G V   D     F  +  S I  IGR  R
Sbjct: 426 GIDFKNIGTVINFD-----FPITIESYIHRIGRCGR 456


>gi|320334950|ref|YP_004171661.1| ATP-dependent DNA helicase RecG [Deinococcus maricopensis DSM
           21211]
 gi|319756239|gb|ADV67996.1| ATP-dependent DNA helicase RecG [Deinococcus maricopensis DSM
           21211]
          Length = 779

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           ++A+DL   L   + R+  +H ++   E+ E++   R  +FDVLV   ++  G+D+P   
Sbjct: 586 QLADDLKVILP--DARIDLLHGKMSAAEKDEVMDRFRRREFDVLVSTTVIEVGVDVPNAT 643

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA 690
           ++ I +A++ G     + L Q  GR  R +  S  +L A
Sbjct: 644 VMVIENAERFGL----SQLHQLRGRVGRGSAQSYCVLIA 678


>gi|299535918|ref|ZP_07049238.1| primosomal protein N' [Lysinibacillus fusiformis ZC1]
 gi|298728670|gb|EFI69225.1| primosomal protein N' [Lysinibacillus fusiformis ZC1]
          Length = 803

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           EI+     G+ D+L+G  ++ +GLD P   LV +L AD    L       R+   L Q  
Sbjct: 596 EILEIFGAGQADILLGTQMIAKGLDFPNITLVGVLSADTSLHLPDYRAAERTFQLLTQVS 655

Query: 676 GRAARN 681
           GRA R+
Sbjct: 656 GRAGRH 661


>gi|294673722|ref|YP_003574338.1| type III restriction-modification system subunit Res [Prevotella
           ruminicola 23]
 gi|294472312|gb|ADE81701.1| type III restriction-modification system, Res subunit [Prevotella
           ruminicola 23]
          Length = 472

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 63/147 (42%), Gaps = 10/147 (6%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R Q+ D Y    L   +G + ++  ++++ ++ + +   E  I +  + S+    ER   
Sbjct: 239 RAQLLDSY----LKYAKGKKGIIYSISRKHSDHICQEYREAGINIVRIDSKTPKDERKLY 294

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +   + G  D++V +++  EG D P+   + +    K     S    +Q +GR  R    
Sbjct: 295 VDRFKKGLIDIIVNVDIFSEGFDCPDIEFIQLARPTK-----SLVKYLQQVGRGLRPTAG 349

Query: 685 K-VILYADTITKSIQLAIDETTRRREK 710
           K + L  D +    Q  +  + R  EK
Sbjct: 350 KSICLILDNVGLHFQFGLPNSERDWEK 376


>gi|212691804|ref|ZP_03299932.1| hypothetical protein BACDOR_01299 [Bacteroides dorei DSM 17855]
 gi|237708604|ref|ZP_04539085.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 9_1_42FAA]
 gi|237724128|ref|ZP_04554609.1| ATP-dependent DNA helicase RecG [Bacteroides sp. D4]
 gi|265755202|ref|ZP_06089972.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_33FAA]
 gi|212665705|gb|EEB26277.1| hypothetical protein BACDOR_01299 [Bacteroides dorei DSM 17855]
 gi|229437588|gb|EEO47665.1| ATP-dependent DNA helicase RecG [Bacteroides dorei 5_1_36/D4]
 gi|229457304|gb|EEO63025.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 9_1_42FAA]
 gi|263234344|gb|EEZ19934.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_33FAA]
          Length = 698

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT-MAKVIEAMQRP- 195
           TF+     +  +G Q   I ++ K + S R+  +LL G  GSGKT   +  ++ A+    
Sbjct: 259 TFYSQNLPFELTGAQKRVIKEIRKDMGSGRQMNRLLQGDVGSGKTLVALMSMLIALDNGY 318

Query: 196 -AIVMAPNKILAAQLYSEFKNFF 217
            A +MAP +ILAAQ Y   + F 
Sbjct: 319 QACMMAPTEILAAQHYETIRKFL 341


>gi|115438787|ref|NP_001043673.1| Os01g0639100 [Oryza sativa Japonica Group]
 gi|75321708|sp|Q5VNM3|RH2_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 2
 gi|55297015|dbj|BAD68586.1| putative nicotiana eukaryotic translation initiation factor 4A
           [Oryza sativa Japonica Group]
 gi|55297606|dbj|BAD68952.1| putative nicotiana eukaryotic translation initiation factor 4A
           [Oryza sativa Japonica Group]
 gi|113533204|dbj|BAF05587.1| Os01g0639100 [Oryza sativa Japonica Group]
 gi|215707106|dbj|BAG93566.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222618929|gb|EEE55061.1| hypothetical protein OsJ_02769 [Oryza sativa Japonica Group]
          Length = 404

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R
Sbjct: 263 DLYDTLTIT-----QAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFR 317

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 318 SGATRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 363


>gi|326491449|dbj|BAJ94202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 674

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 6/99 (6%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G +IL+   TKRM + L+  L  R      +H +    ER +++   R G+  +LV  ++
Sbjct: 257 GSKILIFCTTKRMCDQLSRTL-NRQFGAAAIHGDKSQNEREKVLSQFRSGRAPILVATDV 315

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              GLDI +  +V   D     F       +  IGR  R
Sbjct: 316 AARGLDIKDIRVVINYD-----FPTGVEDYVHRIGRTGR 349


>gi|323650132|gb|ADX97152.1| DEAD (asp-glu-ala-asp) box polypeptide 21 [Perca flavescens]
          Length = 256

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           R +H ++   +R   ++  R G F+VLV  N+   GLDIPE  LV      K+       
Sbjct: 4   RALHGDIPQKQREITLKSFRNGGFEVLVATNVAARGLDIPEVDLVVQCSPPKD-----VE 58

Query: 670 SLIQTIGRAARNVNSKVIL 688
           S I   GR  R   + V +
Sbjct: 59  SYIHRSGRTGRAGRTGVCI 77


>gi|299749479|ref|XP_002911384.1| RNA helicase [Coprinopsis cinerea okayama7#130]
 gi|298408458|gb|EFI27890.1| RNA helicase [Coprinopsis cinerea okayama7#130]
          Length = 425

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEI   + Q  ++L+ V TKR+A+D+T+YL +       +H + +  ER  ++ + + G+
Sbjct: 348 DEI---SAQNAKVLIFVATKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLGEFKAGR 404

Query: 633 FDVLVGINLLREGL 646
             +L+  ++   GL
Sbjct: 405 SPILIATDVASRGL 418


>gi|134102556|ref|YP_001108217.1| ATP-dependent DNA helicase RecG [Saccharopolyspora erythraea NRRL
           2338]
 gi|133915179|emb|CAM05292.1| putative ATP-dependent DNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 750

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H  +   ++  ++R    G  DVLV   ++  G+++P   ++ I+DAD+ G  
Sbjct: 566 SLRLGVLHGRLPADDKDAVMRGFAAGDIDVLVATTVVEVGVNVPNATVMVIMDADRFGV- 624

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R     + L
Sbjct: 625 ---SQLHQLRGRVGRGSAPGLCL 644


>gi|229541908|ref|ZP_04430968.1| type III restriction protein res subunit [Bacillus coagulans 36D1]
 gi|229326328|gb|EEN92003.1| type III restriction protein res subunit [Bacillus coagulans 36D1]
          Length = 602

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I+ + L ++    + E    R +R  Y+HS     +   ++  L+  + DV+V +  L 
Sbjct: 288 KIIASALNRQHCIQVMEAYRARGLRAAYVHSLQDDADNDRVLSQLKNHQLDVIVQVRKLG 347

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           EG D P   + AI     E      +  +Q +GR  R V+
Sbjct: 348 EGFDHPYLSVAAIFSVFNE-----LSPFVQFVGRVMRTVD 382


>gi|21323730|dbj|BAB98356.1| Transcription-repair coupling factor - superfamily II helicase
           [Corynebacterium glutamicum ATCC 13032]
          Length = 1209

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           A++P  +T   +  S    I   R      L +    +  +   C   +   E  + +  
Sbjct: 70  AWLPSWETLPHERLSPGVDIVGKRAQVLNHLGDLKVVVAAARAFCQPVLKDAEGRAPLT- 128

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            LK G   +   L + LV + YK  D+   RG F   G  ++IFP+ L D   RV  +G+
Sbjct: 129 -LKEGAEFDFSALTTELVFRAYKHVDMVAKRGEFATRGGILDIFPTTL-DYPVRVEFWGD 186

Query: 356 DIEEISEF 363
           ++ +I +F
Sbjct: 187 EVSDIRQF 194


>gi|24666101|ref|NP_649009.1| CG5589 [Drosophila melanogaster]
 gi|7293941|gb|AAF49303.1| CG5589 [Drosophila melanogaster]
          Length = 594

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +QGL+  +L+ V +K  A+ L E L    I V  +H+E    +R   ++  R G   VL+
Sbjct: 362 RQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIWVLI 421

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+  G+D     LV   D     F  +  S I  IGR  R
Sbjct: 422 CTELMGRGIDFKGVNLVINYD-----FPPTTISYIHRIGRTGR 459


>gi|37524175|ref|NP_927519.1| hypothetical protein plu0153 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783598|emb|CAE12448.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 619

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L+++   +IL    +   AEDL  +  E+ +    +HSE+   E     R++   + DV+
Sbjct: 277 LSSKVPHKILAVGCSISHAEDLYHWYKEKGLNSIIVHSEMSLDELRRAFRNIENHQCDVV 336

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           + +N+L EG D     ++AI         RS  +  Q +GR  R +
Sbjct: 337 ISVNMLMEGYDHKYLSILAIFRP-----YRSINAFAQVVGRILRAI 377


>gi|332675736|gb|AEE72552.1| DEAD-box ATP-dependent RNA helicase CshA [Propionibacterium acnes
           266]
          Length = 564

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 64/126 (50%), Gaps = 8/126 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G+  +LV  ++  
Sbjct: 305 KVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVAA 364

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVILYADT-----ITKSI 697
            G+D+   G+  +++ +     ++    I   GRA A+ +   ++ +AD      I K++
Sbjct: 365 RGIDV--TGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADVTRWKLINKTL 422

Query: 698 QLAIDE 703
            L + E
Sbjct: 423 NLELSE 428


>gi|328553533|gb|AEB24025.1| primosome assembly protein PriA [Bacillus amyloliquefaciens TA208]
 gi|328911675|gb|AEB63271.1| primosomal replication factor Y (primosomal protein N'') [Bacillus
           amyloliquefaciens LL3]
          Length = 803

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 15/102 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+R+ E+LT+ L +     R +  +V T  R     +++     GK D+L+G  ++ +GL
Sbjct: 563 TQRVEEELTKVLPQ----ARVIRMDVDTTSRKGAHEKLLSAFGEGKADILLGTQMIAKGL 618

Query: 647 DIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           D P   LV +L AD    +       ++   L Q  GRA R+
Sbjct: 619 DFPNVTLVGVLSADTTLHIPDFRAAEKTFQLLTQVSGRAGRH 660


>gi|328478045|gb|EGF47932.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus MTCC 5462]
          Length = 313

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR  ++LT  L  R  R   +H ++   +R+ ++R  + G+ D LV  ++   GLDI
Sbjct: 248 TKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAARGLDI 305


>gi|325206697|gb|ADZ02150.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis M04-240196]
          Length = 680

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++     G  +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPELNIGL--VHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|325577828|ref|ZP_08148103.1| DNA helicase RecG [Haemophilus parainfluenzae ATCC 33392]
 gi|325160573|gb|EGC72699.1| DNA helicase RecG [Haemophilus parainfluenzae ATCC 33392]
          Length = 693

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+ L    +++  +H  +K  E+ +I+   +  + D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLTKAL--PMLKIGLVHGRMKPQEKQDIMAAFKNAELDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           I +A++ G     + L Q  GR  R   +   V++Y   + K  Q
Sbjct: 567 IENAERLGL----SQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQ 607


>gi|254882342|ref|ZP_05255052.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 4_3_47FAA]
 gi|319640606|ref|ZP_07995325.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_40A]
 gi|254835135|gb|EET15444.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 4_3_47FAA]
 gi|317387776|gb|EFV68636.1| ATP-dependent DNA helicase RecG [Bacteroides sp. 3_1_40A]
          Length = 698

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT-MAKVIEAMQRP- 195
           TF+     +  +G Q   I ++ K + S R+  +LL G  GSGKT   +  ++ A+    
Sbjct: 259 TFYSQNLPFELTGAQKRVIKEIRKDMGSGRQMNRLLQGDVGSGKTLVALMSMLIALDNGY 318

Query: 196 -AIVMAPNKILAAQLYSEFKNFF 217
            A +MAP +ILAAQ Y   + F 
Sbjct: 319 QACMMAPTEILAAQHYETIRKFL 341


>gi|242041163|ref|XP_002467976.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor]
 gi|241921830|gb|EER94974.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor]
          Length = 766

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   +++ + L +R  R+  +H +     R+E ++  + G + VLV  ++   
Sbjct: 467 VLVFASKKARVDEIEKELNQRGFRIAALHGDKDQASRMETLQKFKSGTYHVLVATDVAAR 526

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           GLDI     V   D  KE  +      I  IGR  R  +     Y     K  + A
Sbjct: 527 GLDIKSIKTVVNFDIAKEMDMH-----IHRIGRTGRAGDKDGTAYTLITQKEARFA 577


>gi|254521627|ref|ZP_05133682.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
 gi|219719218|gb|EED37743.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
          Length = 648

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L   L  R +    ++ +++  +R   I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  + + IL+A    K +   I+
Sbjct: 311 GLDVERISHVLNYDIPYDTESYVHR----IGRTGRAGR--SGEAILFATPREKGMLRQIE 364

Query: 703 ETTRRREKQLEHNKKHNIN 721
             TR+  ++++      +N
Sbjct: 365 RATRQPIEEMQLPSVEAVN 383


>gi|169837126|ref|ZP_02870314.1| primosomal protein N' [candidate division TM7 single-cell isolate
           TM7a]
          Length = 231

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 8/114 (7%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L I+   +  ++ E   + LY      R+     K     E  ++L  GK D+++G  ++
Sbjct: 3   LEIIHKGIGTKLLESELKKLYPNATIARFDGDNKKGESLDERYQELYNGKIDIIIGTQVV 62

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTS-------LIQTIGRAARNVN-SKVIL 688
            +G+D+P+   V ++ AD    L   TS       L Q IGR  R+ N S+V++
Sbjct: 63  AKGIDLPKLNTVGVVQADTNLSLPDYTSEERVFQLLSQVIGRVGRHGNDSEVVI 116


>gi|167525138|ref|XP_001746904.1| p68DDX5 RNA helicase [Monosiga brevicollis MX1]
 gi|163774684|gb|EDQ88311.1| p68DDX5 RNA helicase [Monosiga brevicollis MX1]
          Length = 487

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +DLT  L         MH + +  ER  ++ + R G+  +L+  ++   GLD+ +
Sbjct: 318 TKRNVDDLTRNLRREGFPAMCMHGDKQQRERDTVLAEFRDGRHPILIATDVASRGLDVKD 377

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
              V   D     +  +    +  IGR AR 
Sbjct: 378 IKYVINFD-----YPNNSEDYVHRIGRTARG 403


>gi|168053931|ref|XP_001779387.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669185|gb|EDQ55777.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 741

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 5/116 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+   TK   E+L   + E   +V  +H +     R+E+++  + G + +LV  ++   
Sbjct: 482 VLVFASTKLRVEELEGKISEAGFKVAALHGDKDQATRMEVLQKFKNGIYHILVATDVAAR 541

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           GLDI     V  +D       R   S +  IGR  R  +   + +     K  + A
Sbjct: 542 GLDIKSIKTVVNVD-----IARDMDSHVHRIGRTGRAGDKDGVAHTLVTGKEARFA 592


>gi|150003059|ref|YP_001297803.1| ATP-dependent DNA helicase RecG [Bacteroides vulgatus ATCC 8482]
 gi|294775914|ref|ZP_06741413.1| ATP-dependent DNA helicase RecG [Bacteroides vulgatus PC510]
 gi|149931483|gb|ABR38181.1| ATP-dependent DNA helicase RecG [Bacteroides vulgatus ATCC 8482]
 gi|294450283|gb|EFG18784.1| ATP-dependent DNA helicase RecG [Bacteroides vulgatus PC510]
          Length = 698

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT-MAKVIEAMQRP- 195
           TF+     +  +G Q   I ++ K + S R+  +LL G  GSGKT   +  ++ A+    
Sbjct: 259 TFYSQNLPFELTGAQKRVIKEIRKDMGSGRQMNRLLQGDVGSGKTLVALMSMLIALDNGY 318

Query: 196 -AIVMAPNKILAAQLYSEFKNFF 217
            A +MAP +ILAAQ Y   + F 
Sbjct: 319 QACMMAPTEILAAQHYETIRKFL 341


>gi|120598668|ref|YP_963242.1| transcription-repair coupling factor [Shewanella sp. W3-18-1]
 gi|120558761|gb|ABM24688.1| transcription-repair coupling factor [Shewanella sp. W3-18-1]
          Length = 1162

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 79/179 (44%), Gaps = 16/179 (8%)

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           +++ P  D   ++  +++ QI +  HS           ++V   + +  +      S  +
Sbjct: 84  DSFSPHQDLISQRLETLS-QISQTEHS----------VVIVPVTTLMMRLPPKAYLSANV 132

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             LK GD  +   +   L    Y   +     G F + G  ++IFP+ + ++  R+ +F 
Sbjct: 133 FVLKKGDRYQLHNVRQHLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGV-NMPLRIELFD 191

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
           +++E I  F P T + +  VE+I++     +    PT + A++  ++  + R   + KE
Sbjct: 192 DEVETIRHFDPETQRSLHPVESIRLLPAKEF----PTDSAAIEGFRQRYRRRFEVIVKE 246


>gi|194333600|ref|YP_002015460.1| transcription-repair coupling factor [Prosthecochloris aestuarii
           DSM 271]
 gi|194311418|gb|ACF45813.1| transcription-repair coupling factor [Prosthecochloris aestuarii
           DSM 271]
          Length = 1120

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 8/97 (8%)

Query: 589 VLTKRMA--EDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           VL  R+A  E++ + L E    +R+ Y H ++ T E   I+ D    + DVL+  +++  
Sbjct: 750 VLHNRIAGLEEMKQTLQELVPGVRMAYAHGQMPTAELENIMMDFITHELDVLISTSIIGS 809

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           GLDI     + I  AD  G     + L Q  GR  R+
Sbjct: 810 GLDISNANTIIINRADMFGL----SDLYQLRGRVGRS 842


>gi|325104478|ref|YP_004274132.1| primosomal protein N' [Pedobacter saltans DSM 12145]
 gi|324973326|gb|ADY52310.1| primosomal protein N' [Pedobacter saltans DSM 12145]
          Length = 825

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 7/66 (10%)

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQT 674
           + II D    + DVLVG  ++ +GLD     L+ I++AD          + RS   L Q 
Sbjct: 617 MHIITDFEEKRLDVLVGTQMVAKGLDFDNVTLIGIINADNMLQFPDFRAYERSFQMLSQV 676

Query: 675 IGRAAR 680
            GRA R
Sbjct: 677 AGRAGR 682


>gi|309791795|ref|ZP_07686282.1| ATP-dependent DNA helicase RecQ [Oscillochloris trichoides DG6]
 gi|308226117|gb|EFO79858.1| ATP-dependent DNA helicase RecQ [Oscillochloris trichoides DG6]
          Length = 466

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q  L  ++  LT R  E +  +L  ++I     HS++ + +R E+ + L      VLV  
Sbjct: 10  QLPLSGIVYTLTVRDCERVASWLQSQHIDAAAYHSDIDSAQREELEQRLLSNDLKVLVAT 69

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
             L  G D P+ G V            S     Q +GRA R VN
Sbjct: 70  TALGMGFDKPDLGFVIHFQRPA-----SVVHYYQQVGRAGRAVN 108


>gi|297303643|ref|XP_001095294.2| PREDICTED: ATP-dependent RNA helicase DDX3X [Macaca mulatta]
          Length = 738

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 530 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 588

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 589 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 647

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 648 ---NITKDL 653


>gi|296411733|ref|XP_002835584.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629370|emb|CAZ79741.1| unnamed protein product [Tuber melanosporum]
          Length = 388

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T+R  + LTE + E N  V  MH E+   ER  I+++ R
Sbjct: 257 DLYDTLTIT-----QAVIFCNTRRKVDWLTEKMREANFTVSAMHGEMPQKERDAIMQEFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGL 653
            G   VL+  ++   G+D+ +  L
Sbjct: 312 QGNSRVLISTDVWARGIDVQQVSL 335


>gi|282861348|ref|ZP_06270413.1| ATP-dependent DNA helicase RecG [Streptomyces sp. ACTE]
 gi|282564006|gb|EFB69543.1| ATP-dependent DNA helicase RecG [Streptomyces sp. ACTE]
          Length = 754

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  +   ++ +++R    G+ DVLV   ++  G+++P    + I+DAD+ G  
Sbjct: 570 GLRIEVLHGRMPPDDKDDVMRRFAAGEADVLVATTVIEVGVNVPNATAMVIMDADRFGV- 628

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R     + L
Sbjct: 629 ---SQLHQLRGRVGRGSAPGLCL 648


>gi|227111702|ref|ZP_03825358.1| transcription-repair coupling factor [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 1149

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 127/309 (41%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV---EYFV 226
           Q LLG +TG+      A++IE      +++AP+   A +L  E + F   +     ++  
Sbjct: 16  QRLLGQLTGAACAVECAEIIERHTGLVVLVAPDMQNALRLRDEIQQFTDQHVTTLPDWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M          +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQEI------ISTRLSTLYQLPNMTRGVLILPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         LK G  + + +L S L +  Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------LKKGQRLSRDKLRSQLEQAGYRSVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E+  +R+  F ++I+ +  F   T + +  V  I +     +    PT  TA++  + +
Sbjct: 176 SEE-PYRIDFFDDEIDSLRLFDVDTQRTLNEVPHINLLPAHEF----PTDKTAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            + +  E+ +     +A+ + Q+++  +           IE +          EP P+LF
Sbjct: 231 WREQF-EVRR-----DAEHIYQQVSKGV-------WPAGIEYWQPLFF----SEPLPSLF 273

Query: 463 EYIPEDSLL 471
            Y P ++L+
Sbjct: 274 SYFPNNTLI 282


>gi|190573462|ref|YP_001971307.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a]
 gi|190011384|emb|CAQ44999.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a]
          Length = 654

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 10/141 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L   L  R +    ++ +++  +R   I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  + + IL+A    K +   I+
Sbjct: 311 GLDVERISHVLNYDIPYDTESYVHR----IGRTGRAGR--SGEAILFATPREKGMLRQIE 364

Query: 703 ETTRR--REKQLEHNKKHNIN 721
             TR+   E QL   +  N N
Sbjct: 365 RATRQPIEEMQLPSVEAVNDN 385


>gi|220919566|ref|YP_002494870.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219957420|gb|ACL67804.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 1233

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 20/179 (11%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGN 355
           L  G  V+++ L + LV   + R  +    GTF V G  ++++ P+  + V  R+  FG+
Sbjct: 146 LGKGVEVDREALAAKLVLLGFARTPLVEDPGTFAVRGGIVDLWSPADPKPV--RLEFFGD 203

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +IE    F P T +   +VE + +  +   +        A   ++E              
Sbjct: 204 EIESCRAFDPSTQRSEGDVEEVLLCPSREALFTEEGKEAAKTAVRE-------------- 249

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
              A+R+ +  +   E+L+   +          L G +PG    TLF+Y+P  + ++VD
Sbjct: 250 --AAERVNRPTSRVREVLDAIDAGTPFFGLEALLPGFHPGG-LGTLFDYLPAGAAVYVD 305


>gi|161869430|ref|YP_001598597.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis 053442]
 gi|161594983|gb|ABX72643.1| DNA helicase [Neisseria meningitidis 053442]
          Length = 680

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++     G  +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPELNIGL--VHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|295815286|ref|YP_001250813.3| ATP dependent DNA helicase RecG [Legionella pneumophila str. Corby]
 gi|148281379|gb|ABQ55467.1| ATP dependent DNA helicase RecG [Legionella pneumophila str. Corby]
          Length = 616

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RVR +H  +K  E+   +   + G+ D +V   ++  G+D+P   L+ I +A++ G    
Sbjct: 442 RVRQVHGRMKAHEKEATMAAFKQGEIDKVVATTVIEVGVDVPNASLMIIENAERLGL--- 498

Query: 668 KTSLIQTIGRAARNVNSK--VILYADTITK 695
            + L Q  GR  R  N    ++LY   +++
Sbjct: 499 -SQLHQLRGRVGRGNNQSHCLLLYQSPLSQ 527


>gi|170719350|ref|YP_001747038.1| ATP-dependent DNA helicase RecG [Pseudomonas putida W619]
 gi|169757353|gb|ACA70669.1| ATP-dependent DNA helicase RecG [Pseudomonas putida W619]
          Length = 692

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L   L E  +RV  +H  +K  E+  ++ + + G   +LV   ++  G+D+P   L+ 
Sbjct: 508 EELGSALGE--LRVGLIHGRMKPAEKAAVMAEFKQGDLQLLVATTVIEVGVDVPNASLMI 565

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITK 695
           I + ++ G       L Q  GR  R   V+  V+LY   +++
Sbjct: 566 IENPERLGL----AQLHQLRGRVGRGSAVSHCVLLYHPPLSQ 603


>gi|92081528|dbj|BAE93311.1| zinc finger protein [Ciona intestinalis]
          Length = 556

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 9/143 (6%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE +  R+++ ++  ++N   +   R L+ V TKR A+ L   L + +     +H +   
Sbjct: 343 VEWKDKRSKLLELIADVN---ETKSRTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQ 399

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            +R + +RD +L    +LV  ++   GLDIP+   V   D  +E         +  IGR 
Sbjct: 400 QDREQALRDFKLAVCPILVATSVAARGLDIPKVEHVINYDMPRE-----IDEYVHRIGRT 454

Query: 679 ARNVN-SKVILYADTITKSIQLA 700
            R  N  +   + D     I LA
Sbjct: 455 GRCGNLGRATTFFDNKKTQIWLA 477


>gi|19073987|ref|NP_584593.1| PUTATIVE ATP-DEPENDENT RNA HELICASE (DEAD box family)
           [Encephalitozoon cuniculi GB-M1]
 gi|19068629|emb|CAD25097.1| PUTATIVE ATP-DEPENDENT RNA HELICASE (DEAD box family)
           [Encephalitozoon cuniculi GB-M1]
          Length = 503

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 14/157 (8%)

Query: 559 VEIRSARTQVEDVYD--EINLAAQ-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           VE+R+ +  + ++    +INL        Q  ++L+ V  K    ++ + L +  I    
Sbjct: 309 VEVRNKKKMLLNILKGPDINLKGSWRMEVQPDKVLVFVERKSECGEVEKVLKKSGILCVS 368

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +H + +  +R E ++  R G+F V+V  ++   G+DI +  LV   D  K+         
Sbjct: 369 LHGDKEQADRDEALKGFRNGRFPVMVATSVAARGIDIKDVKLVINYDIPKD-----IKEY 423

Query: 672 IQTIGRAARNVNS--KVILYADTITKSIQLAIDETTR 706
           I  IGR  R   S   +  Y   +T  ++ A+ E  R
Sbjct: 424 IHRIGRTGREGKSGKSISFYDGGMTADLKKALVEVLR 460


>gi|330505643|ref|YP_004382512.1| ATP-dependent DNA helicase RecG [Pseudomonas mendocina NK-01]
 gi|328919929|gb|AEB60760.1| ATP-dependent DNA helicase RecG [Pseudomonas mendocina NK-01]
          Length = 691

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 16/138 (11%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLT----EYLYER------NIRVRYMHSEVKTL 619
           +V + +  A QQG +          +E+LT    E  YE        +RV  +H  +K  
Sbjct: 469 EVVERVRNACQQGRQAYWVCTLIEESEELTCQAAETSYEELSAALGELRVGLIHGRMKPA 528

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+  ++ + + G   +LV   ++  G+D+P   L+ I + ++ G       L Q  GR  
Sbjct: 529 EKAAVMEEFKQGSLQLLVATTVIEVGVDVPNASLMIIENPERLGL----AQLHQLRGRVG 584

Query: 680 RNVNSK--VILYADTITK 695
           R   +   V+LY   +++
Sbjct: 585 RGSAASHCVLLYHAPLSQ 602


>gi|317506526|ref|ZP_07964323.1| ATP-dependent DNA helicase RecG [Segniliparus rugosus ATCC BAA-974]
 gi|316255165|gb|EFV14438.1| ATP-dependent DNA helicase RecG [Segniliparus rugosus ATCC BAA-974]
          Length = 760

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  MH  +   E+ + +     G+  VLV   ++  G+D+P   ++ ILDAD+ G  
Sbjct: 581 GLRLGLMHGGLPPAEKDKAMASFASGETQVLVSTTVIEVGVDVPNSTMMVILDADRFGI- 639

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
              + L Q  GR  R  +  + ++   +T++   ++D
Sbjct: 640 ---SQLHQLRGRVGRGGHPGLCIF---VTRAGGASLD 670


>gi|313812629|gb|EFS50343.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
          Length = 560

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 64/126 (50%), Gaps = 8/126 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G+  +LV  ++  
Sbjct: 301 KVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVAA 360

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVILYADT-----ITKSI 697
            G+D+   G+  +++ +     ++    I   GRA A+ +   ++ +AD      I K++
Sbjct: 361 RGIDV--TGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADVTRWKLINKAL 418

Query: 698 QLAIDE 703
            L + E
Sbjct: 419 NLELSE 424


>gi|289619969|emb|CBI53413.1| unnamed protein product [Sordaria macrospora]
          Length = 602

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TKR+A+D+T +L +       +H + +  ER  ++   + GK  ++V  ++  
Sbjct: 422 KILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVAS 481

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+    +  +L+ D   +  +    I  IGR  R
Sbjct: 482 RGIDVRN--ITHVLNYD---YPNNSEDYIHRIGRTGR 513


>gi|294900399|ref|XP_002776976.1| helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239884323|gb|EER08792.1| helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 181

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G +I++   TKR A+DLT  L         +H + K  ER  ++++ + GK  +++  ++
Sbjct: 3   GSKIVIFTDTKRAADDLTRMLRMDGWPALSIHGDKKQEERDWVLQEFKSGKSPIMIATDV 62

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
              GLD+ +  L  +++ D  G +      I   GRA 
Sbjct: 63  ASRGLDVKD--LRHVINYDFPGQIEDYVHRIGRTGRAG 98


>gi|289425167|ref|ZP_06426944.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           SK187]
 gi|295130858|ref|YP_003581521.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
 gi|289154145|gb|EFD02833.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           SK187]
 gi|291375854|gb|ADD99708.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
 gi|313792354|gb|EFS40453.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
 gi|313816221|gb|EFS53935.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
 gi|313832974|gb|EFS70688.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
 gi|314914858|gb|EFS78689.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
 gi|314962474|gb|EFT06574.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
 gi|314983655|gb|EFT27747.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
 gi|315077690|gb|EFT49741.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
 gi|315080851|gb|EFT52827.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
 gi|315109398|gb|EFT81374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
 gi|327329827|gb|EGE71582.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA2]
 gi|327452200|gb|EGE98854.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
          Length = 560

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 64/126 (50%), Gaps = 8/126 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G+  +LV  ++  
Sbjct: 301 KVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVAA 360

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVILYADT-----ITKSI 697
            G+D+   G+  +++ +     ++    I   GRA A+ +   ++ +AD      I K++
Sbjct: 361 RGIDV--TGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADVTRWKLINKAL 418

Query: 698 QLAIDE 703
            L + E
Sbjct: 419 NLELSE 424


>gi|162455330|ref|YP_001617697.1| primosomal protein N' [Sorangium cellulosum 'So ce 56']
 gi|161165912|emb|CAN97217.1| primosomal protein N' [Sorangium cellulosum 'So ce 56']
          Length = 807

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 608 RVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL- 665
           RV  +  +V   +R + I+  +R GK D+LVG  ++ +G D+P   LV +++AD    L 
Sbjct: 581 RVARLDRDVAGKDRSQAILAKMREGKIDILVGTQMVTKGHDLPNVTLVGVVNADAALGLP 640

Query: 666 ------RSKTSLIQTIGRAAR 680
                 R    L+Q  GRA R
Sbjct: 641 DFRAAERGFQLLVQVAGRAGR 661


>gi|154324248|ref|XP_001561438.1| hypothetical protein BC1G_00523 [Botryotinia fuckeliana B05.10]
 gi|160419159|sp|A6RJA2|PRP28_BOTFB RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|150842752|gb|EDN17945.1| hypothetical protein BC1G_00523 [Botryotinia fuckeliana B05.10]
          Length = 783

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 19/124 (15%)

Query: 108 RLIQSD-NPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS 166
           R+ + D N   K G I  P R+WS +   K +     Q  Y    D+P+A+ +    I  
Sbjct: 360 RIFKEDFNISTKGGAIPNPMRNWSESKLPKRLLDVIHQVGY----DEPSAVQRAAIPIAL 415

Query: 167 REKVQLLLGVTGSGKT--FTMAKVIEAMQRP------------AIVMAPNKILAAQLYSE 212
           + +  + + VTGSGKT  F +  ++   + P            AI++AP + LA Q+  E
Sbjct: 416 QARDLIGVAVTGSGKTAAFLLPLLVYISELPPLNEFTKNDGPYAIILAPTRELAQQIEVE 475

Query: 213 FKNF 216
            K F
Sbjct: 476 AKKF 479


>gi|1170507|sp|P41380|IF4A3_NICPL RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3
 gi|19699|emb|CAA43514.1| nicotiana eukaryotic translation initiation factor 4A [Nicotiana
           plumbaginifolia]
          Length = 391

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LT  + E N  V  MH ++   ER  I+ + R
Sbjct: 250 DLYDTLTIT-----QAVIFCNTKRKVDWLTSKMRENNFTVSSMHGDMPQKERDAIMAEFR 304

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 305 GGTTRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 350


>gi|117924939|ref|YP_865556.1| DEAD/DEAH box helicase [Magnetococcus sp. MC-1]
 gi|117608695|gb|ABK44150.1| DEAD/DEAH box helicase domain protein [Magnetococcus sp. MC-1]
          Length = 439

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 22/172 (12%)

Query: 553 GLVDPP--VEIRSARTQVEDVYDEINLAAQQGLRILL-TVL-------------TKRMAE 596
           GL+  P  VE+    T VE +  ++    +Q  R LL  VL             TK  A 
Sbjct: 200 GLLTNPAKVEVTPESTTVERITQKVLFVDKQNKRSLLKNVLEHESIEQVLVFTRTKHGAN 259

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            + EYL +  I    +H       R + +   R GK  VLV  ++   G+D+   G+  +
Sbjct: 260 RVAEYLDKHRIASAAIHGNKSQSAREKALDGFRKGKLKVLVATDIAARGIDV--AGISHV 317

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRR 707
           ++ D         S +  IGR AR   +   I + D   +   L I++T R+
Sbjct: 318 INFD---LPNESESYVHRIGRTARAGRDGNAISFCDAEERGYLLDIEKTIRQ 366


>gi|319941355|ref|ZP_08015684.1| DNA helicase restriction enzyme Type III R subunit [Sutterella
           wadsworthensis 3_1_45B]
 gi|319805116|gb|EFW01943.1| DNA helicase restriction enzyme Type III R subunit [Sutterella
           wadsworthensis 3_1_45B]
          Length = 1661

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 45/212 (21%)

Query: 11  KDSRIQSISTRVDDLDYFS-----FEEKQLEVDKTMVADAMRRIRSEAGKHRKNAAKRML 65
           KD  I  ++T  DD D F+     F +K   V K+ V   +      A  +R    +R +
Sbjct: 72  KDIGIDLVATLEDDPDAFAAIQCKFYDKDAVVPKSGVDSFI------AASNRDYFKQRYI 125

Query: 66  IHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTP 125
           I   EN               SE    E+  Q +TP +Q + R       +L + +I   
Sbjct: 126 ITTNEN--------------WSENALTEM--QNVTPPIQLVRR------SMLASSRI--- 160

Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185
             +WS+  ++  +     Q    P   Q  AI ++++G  +  + +L++   G+GKTFT 
Sbjct: 161 --NWSVYLNTGKVV---QQKKRTPRKYQEEAIQRVIEGFKTNNRGKLIMAC-GTGKTFTS 214

Query: 186 AKVIEAMQRP---AIVMAPNKILAAQLYSEFK 214
            K+ E M+      + + P+  L +Q  +++K
Sbjct: 215 MKIAEKMEGNNGFVMFLVPSLALLSQTLTDWK 246


>gi|319943535|ref|ZP_08017817.1| DEAD/DEAH box helicase family protein [Lautropia mirabilis ATCC
           51599]
 gi|319743350|gb|EFV95755.1| DEAD/DEAH box helicase family protein [Lautropia mirabilis ATCC
           51599]
          Length = 872

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G  I+ T  TKR AE+L+E L      V  +H ++   ER   +  LR G+  VL+  ++
Sbjct: 420 GQAIVFTA-TKRQAEELSEELQGEGFAVDALHGDMNQRERTRALNRLRQGECQVLIATDV 478

Query: 642 LREGLDI 648
              G+D+
Sbjct: 479 AARGIDV 485


>gi|296504780|ref|YP_003666480.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|296325832|gb|ADH08760.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 457

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 66/125 (52%), Gaps = 9/125 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA+ + + L ER ++V  +H ++   +R ++++ +R  +F  +V  +L   G+DI  
Sbjct: 255 TKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI-TKSIQLAIDETTRRRE 709
            G+  +++ +    L      +  +GR AR  +S +   A TI   + + A+D   ++R 
Sbjct: 314 -GISHVINYELPSDL---DFFVHRVGRTARAGHSGI---AVTIYDPANEEALDSLEKQRH 366

Query: 710 KQLEH 714
            + +H
Sbjct: 367 IEFKH 371


>gi|257095000|ref|YP_003168641.1| ATP-dependent DNA helicase RecG [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047524|gb|ACV36712.1| ATP-dependent DNA helicase RecG [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 691

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 15/124 (12%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++RV  +H  +K  E+  ++     G+ DVLV   ++  G+D+    L+ I  A++ G  
Sbjct: 515 DLRVGLVHGRLKGDEKASVMAAFVAGEIDVLVATTVIEVGVDVANASLMVIEHAERFGL- 573

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTRRREKQL-EHNKKHNINP 722
              + L Q  GR  R       V+LY   +++        T R R K + EH     I  
Sbjct: 574 ---SQLHQLRGRVGRGAEESVCVLLYQQPLSR--------TARARLKIIFEHTDGFEIAR 622

Query: 723 QSVK 726
           Q ++
Sbjct: 623 QDLR 626


>gi|255077858|ref|XP_002502509.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
 gi|226517774|gb|ACO63767.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
          Length = 790

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G + +    TKR A+++T  L  R +    +H ++   +R   ++  R G+F VLV  +
Sbjct: 378 KGAKAICFTQTKREADEVTAAL-GRRMATEVLHGDIAQAQRERTLKRFRDGRFSVLVATD 436

Query: 641 LLREGLDIPECGLVAI--LDADKEGFL 665
           +   GLDI +  LV    L  D E F+
Sbjct: 437 VAARGLDITDVDLVVHYELPHDTESFV 463


>gi|156720285|dbj|BAF76795.1| vasa-related protein [Enchytraeus japonensis]
          Length = 516

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+ V  KR A+ L  +L +  +    +H + +  ER   + D + G+  +LV  ++  
Sbjct: 330 RVLVFVEQKRNADFLASFLSQSELPTTSIHGDREQREREIALNDFKSGRKPILVATSVAA 389

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDIP    V   D  KE         +  IGR  R  N
Sbjct: 390 RGLDIPGVMHVVNYDMPKE-----IDEYVHRIGRTGRCGN 424


>gi|145493274|ref|XP_001432633.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399746|emb|CAK65236.1| unnamed protein product [Paramecium tetraurelia]
          Length = 566

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 19/141 (13%)

Query: 554 LVDPPV--EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM------------AEDLT 599
           LVDP V    RS +  +  + + + +  ++ L  LL  L K               +D+ 
Sbjct: 326 LVDPLVINVGRSGQINLNVIQEILYVKQEEKLHYLLDCLKKTTPPVVIFSEHQNDVDDIN 385

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           EYL  + + V  +H   +  +R + ++    G+ DVLV  ++  +GLD P+   V   D 
Sbjct: 386 EYLLIKGVEVVGLHGGKQQEDRTKALKQFLNGQKDVLVATDVAAKGLDFPDIKHVINYDM 445

Query: 660 DKEGFLRSKTSLIQTIGRAAR 680
            K+       S I  IGR  R
Sbjct: 446 PKD-----IESYIHRIGRTGR 461


>gi|104782724|ref|YP_609222.1| transcription-repair coupling protein [Pseudomonas entomophila L48]
 gi|95111711|emb|CAK16435.1| transcription-repair coupling protein [Pseudomonas entomophila L48]
          Length = 1149

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 40/209 (19%), Positives = 88/209 (42%), Gaps = 23/209 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+  +  +A+      R  +++  +   A +L  E + F P   V  F  +    YD 
Sbjct: 21  LPGAALSLAIAEAASTAGRFTLLLTADSQAADRLEQELRFFAPELPVLPFPDWETLPYDL 80

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESY 290
           + P                 ++ I   R ++   L E +  I+V  V+  ++ +      
Sbjct: 81  FSP-----------------HQDIISQRIASLYRLPELDHGILVVPVTTALHRLAPTRFL 123

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
               + L +G  ++ +++ + L    Y+  D     G F V G  I+++P   +   +R+
Sbjct: 124 LGGSLVLDVGQKIDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLYPMGSKQ-PYRI 182

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +F ++IE +  F P T + I  V+++++
Sbjct: 183 DLFDDEIETLRTFDPETQRSIDKVDSVRL 211



 Score = 38.1 bits (87), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 30/103 (29%)

Query: 605 RNIRVRYMHSEVKTLERI-----EIIRDLRLG---------------------KFDVLVG 638
           R  +V Y+H++VKT+E+      E++ + R+G                     +F+VL+ 
Sbjct: 810 RGGQVYYLHNDVKTIEKCAAELAELVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLIA 869

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             ++  G+D+P    + I  ADK G       L Q  GR  R+
Sbjct: 870 STIIETGIDVPSANTIVIERADKFGL----AQLHQLRGRVGRS 908


>gi|77163546|ref|YP_342072.1| helicase-like [Nitrosococcus oceani ATCC 19707]
 gi|76881860|gb|ABA56542.1| Helicase-like [Nitrosococcus oceani ATCC 19707]
          Length = 693

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           DV++ + + +EG D P C  V  +     G+ RS T ++Q IGRA R+   K
Sbjct: 332 DVIIALGMAKEGFDWPFCEHVLTI-----GYRRSMTEIVQIIGRATRDSEGK 378


>gi|68161065|gb|AAY86964.1| eukaryotic translation initiation factor 4A [Ictalurus punctatus]
          Length = 276

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  +H ++   ER  I+++ R G   VL+  +LL  G+D+ +
Sbjct: 151 TRRKVDWLTEKMHARDFTVSALHGDMDQKERDLIMKEFRSGSSRVLITTDLLARGIDVQQ 210

Query: 651 CGLV 654
             LV
Sbjct: 211 VSLV 214


>gi|325127600|gb|EGC50520.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis N1568]
          Length = 680

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++     G  +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPELNIGL--VHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|312384317|gb|EFR29067.1| hypothetical protein AND_02261 [Anopheles darlingi]
          Length = 1651

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 19/142 (13%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD----------ADKEGFLRSKTSLI 672
           ++I+  R  + +VL   N+L EG+D+  C +V + D          +     ++S T L+
Sbjct: 408 QVIKKFRKHQINVLCATNVLEEGIDLQMCNIVVMFDEPLSYSSYMQSKGRARMKSSTYLL 467

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
                      +++ LY D I  +++ A+   T  R + LEH+ +        KE + ++
Sbjct: 468 MVNDEDRSKFTARIQLYHD-IENTLKKALIGKTINRPEPLEHDVR--------KELLDDI 518

Query: 733 IDPILLEDAATTNISIDAQQLS 754
             P +    A  +++   Q L+
Sbjct: 519 TAPFITPAGAKLDLTSSVQLLN 540


>gi|307292130|ref|ZP_07571996.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0411]
 gi|306496783|gb|EFM66334.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis TX0411]
          Length = 678

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 521 LRPTTIVVSATPGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYD 573
           L+P  + ++ATP    L      E    II E    P G +  P+E R  R  Q++ V +
Sbjct: 400 LKPDVLFMTATPIPRTLAITAYGEMDVSIIDEM---PAGRI--PIETRWIRPPQLDTVLE 454

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDL---------TEYLYERNIRVRYMHSEVKTLERI 622
             E  LA      I+  ++ +  A D+          +  Y    +V  +H ++K  E+ 
Sbjct: 455 WMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKD 514

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+++ +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  GR  R  
Sbjct: 515 DIMQEFKDNQLQLLVSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLRGRVGRGS 570

Query: 683 N-SKVILYAD 691
           + S  IL A+
Sbjct: 571 SASYCILVAN 580


>gi|157413397|ref|YP_001484263.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9215]
 gi|157387972|gb|ABV50677.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9215]
          Length = 1169

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 104/237 (43%), Gaps = 34/237 (14%)

Query: 174 LGVTGS---GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L V GS    K+  +A + +  ++  +++ PN  +A            +  + YF S  D
Sbjct: 29  LNVIGSSRYAKSIIIASIAKKEEKNILLICPNVEIA------------YKWIGYFESIND 76

Query: 231 ----YYQPEAYVPRTDTYIEKESSINE--QIDRMRHSATRSLLERN----DCIVVSSVSC 280
               YY P  ++P         +SIN+  +I+  + +    L+++     + I+ +  S 
Sbjct: 77  KAVLYYPPTEHLPY--------ASINKSKEIEFSQLTVLSKLIKKKKNELNIIISTERSL 128

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
              + +     +  + L+ G  +E +EL + L    YK+ ++    G +   G+ I+I+P
Sbjct: 129 QPHLINKNLLIENKLDLQKGVRIEIQELANKLTMLGYKKDNVTSTEGFWSRRGEIIDIYP 188

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
            + E    R+  F N IE+I E+ P T + + ++  I+I      +  R  LN   K
Sbjct: 189 VNNE-FPVRLEFFDNIIEKIREYDPHTQKTLESINNIEIIQAGVDLLIREKLNNLSK 244


>gi|148709584|gb|EDL41530.1| mCG50578 [Mus musculus]
          Length = 405

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 36/64 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R+  V  MH ++   ER  I+R+   G   VL+  +LL  G+D+ +
Sbjct: 281 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFCSGSSRVLIPTDLLARGIDVQQ 340

Query: 651 CGLV 654
             L+
Sbjct: 341 VSLI 344


>gi|50551977|ref|XP_503463.1| YALI0E02552p [Yarrowia lipolytica]
 gi|74659870|sp|Q6C799|DBP8_YARLI RecName: Full=ATP-dependent RNA helicase DBP8
 gi|49649332|emb|CAG79042.1| YALI0E02552p [Yarrowia lipolytica]
          Length = 442

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 9/88 (10%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE L   L   +++   +HSE++  ER+  +   R     VLV  ++   GLDIP   +V
Sbjct: 262 AETLRRMLMALDVKTASLHSEMRQQERVNALGRFRAQAARVLVATDVASRGLDIPTVEMV 321

Query: 655 AILD--ADKEGFLRSKTSLIQTIGRAAR 680
              D  AD + +       I  +GR AR
Sbjct: 322 INFDLPADADDY-------IHRVGRTAR 342


>gi|74025742|ref|XP_829437.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70834823|gb|EAN80325.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 556

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +    ++L E +  + +R+  M++++   ER E + + RLGK  VLV   LL  
Sbjct: 369 VLIFVQSIERTKELHEEIQCQGLRIAIMNAKMTHEERDETMMNFRLGKIWVLVTTELLSR 428

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G V   D        +  S I  +GR  R
Sbjct: 429 GIDFKNVGTVINFDIPT-----TVESYIHRVGRCGR 459


>gi|325141701|gb|EGC64160.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis 961-5945]
 gi|325197708|gb|ADY93164.1| ATP-dependent DNA helicase RecG [Neisseria meningitidis G2136]
          Length = 680

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L E NI +  +H  +K  E+ E++     G  +VLV   ++  G+D+P   L+ I 
Sbjct: 498 LQTALPELNIGL--VHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVPNAALMVIE 555

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
            A++ G       L Q  GR  R       V+L+A+ +
Sbjct: 556 HAERMGL----AQLHQLRGRVGRGAAESVCVLLFAEPL 589


>gi|320580546|gb|EFW94768.1| ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 529

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/108 (19%), Positives = 51/108 (47%), Gaps = 3/108 (2%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TKR  +++T Y+         +H + +  ER  ++ + R G+  ++V  ++  
Sbjct: 345 KVIVFASTKRTCDEITAYMRSEGWPALAIHGDKEQRERDWVLSEFRSGRSPIMVATDVAA 404

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
            G+D+   G+  +++ D  G +      I   GRA     + + ++ D
Sbjct: 405 RGIDVK--GVTTVINHDMPGNVEDYVHRIGRTGRAGEK-GTAITMFTD 449


>gi|315101547|gb|EFT73523.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
          Length = 560

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 64/126 (50%), Gaps = 8/126 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G+  +LV  ++  
Sbjct: 301 KVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVAA 360

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVILYADT-----ITKSI 697
            G+D+   G+  +++ +     ++    I   GRA A+ +   ++ +AD      I K++
Sbjct: 361 RGIDV--TGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADVTRWKLINKAL 418

Query: 698 QLAIDE 703
            L + E
Sbjct: 419 NLELSE 424


>gi|217964667|ref|YP_002350345.1| helicase [Listeria monocytogenes HCC23]
 gi|217333937|gb|ACK39731.1| helicase [Listeria monocytogenes HCC23]
          Length = 397

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 7/148 (4%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G + +L   +   ++ +T    +  I   ++  +    ER  II+  R G+  VL  ++L
Sbjct: 171 GEQAILYASSLYQSKKMTMSFEQVGITAAHIDGKTPKAERDHIIQQFRNGEIKVLCNLDL 230

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           + EG D+P+C  V +L        +S +  IQ   R  R    K  +  D +    +  +
Sbjct: 231 IGEGFDVPDCSTVIMLRP-----TQSLSLYIQQSMRGMRYRTGKTAIIIDHVGNVNRFGL 285

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKI 729
            +  R+    LE  K  N N      KI
Sbjct: 286 PDMERKW--SLEAKKGSNSNKAEAPVKI 311


>gi|168067781|ref|XP_001785785.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662575|gb|EDQ49411.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 395

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R
Sbjct: 254 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQKERDAIMAEFR 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 309 SGTTRVLITTDVWARGLDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 354


>gi|225155423|ref|ZP_03723915.1| Superfamily II DNA and RNA helicase-like protein [Opitutaceae
           bacterium TAV2]
 gi|224803879|gb|EEG22110.1| Superfamily II DNA and RNA helicase-like protein [Opitutaceae
           bacterium TAV2]
          Length = 536

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK  A+ +   L      V  +HS+    ER+E +   + GKF+VLV  ++   
Sbjct: 374 VIIFTRTKMGADRIAHRLQREGHTVGVIHSDRNQRERVEALEGFKSGKFEVLVATDIAAR 433

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           GLDI   G+  +++ D      +    +  IGR  R
Sbjct: 434 GLDI--AGVSHVINYD---VPENPEDYVHRIGRTGR 464


>gi|146422477|ref|XP_001487176.1| eukaryotic initiation factor 4A [Meyerozyma guilliermondii ATCC
           6260]
 gi|152032535|sp|A5DB98|IF4A_PICGU RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|146388297|gb|EDK36455.1| eukaryotic initiation factor 4A [Meyerozyma guilliermondii ATCC
           6260]
          Length = 396

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD I++      + ++   T+   E LT  L   N  V  +H+++   +R  I+ + R
Sbjct: 254 DLYDSISVT-----QAVIFCNTRSKVEFLTTKLKAENFTVSAIHADLPQSDRDTIMNEFR 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   +L+  +LL  G+D+ +  LV   D  A+KE ++
Sbjct: 309 SGSSRILIATDLLARGIDVQQVSLVINYDLPANKENYI 346


>gi|88860699|ref|ZP_01135336.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas tunicata D2]
 gi|88817294|gb|EAR27112.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas tunicata D2]
          Length = 431

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 21/142 (14%)

Query: 554 LVDPPVEIR----SARTQVEDVYDEINLAAQQGL-----------RILLTVLTKRMAEDL 598
           L+  PVEI+     A T V+ V+  +N  A+  L           + L+ V  K   E L
Sbjct: 215 LLTNPVEIQVQSSDASTVVQRVFT-VNKGAKTELLAHLITEHKWRQALIFVNAKNHCEHL 273

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
            + L +R I  +  H +     R  ++ + + G+ D+L+  ++   GLDI +  +V    
Sbjct: 274 AQKLEKRGISAKVFHGDKGQSARTRVLEEFKAGEIDILIATDIAARGLDIEKLPVVI--- 330

Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680
                  RS    +  IGR+ R
Sbjct: 331 --NYNLPRSPADYMHRIGRSGR 350


>gi|328752857|gb|EGF66473.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
          Length = 564

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 64/126 (50%), Gaps = 8/126 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G+  +LV  ++  
Sbjct: 305 KVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVAA 364

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVILYADT-----ITKSI 697
            G+D+   G+  +++ +     ++    I   GRA A+ +   ++ +AD      I K++
Sbjct: 365 RGIDV--TGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADVTRWKLINKAL 422

Query: 698 QLAIDE 703
            L + E
Sbjct: 423 NLELSE 428


>gi|326913476|ref|XP_003203064.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like [Meleagris
           gallopavo]
          Length = 695

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 469 DLLNATGKDSL-TLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 527

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 528 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 586

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 587 ---NITKDL 592


>gi|323490584|ref|ZP_08095789.1| hypothetical protein GPDM_14537 [Planococcus donghaensis MPA1U2]
 gi|323395676|gb|EGA88517.1| hypothetical protein GPDM_14537 [Planococcus donghaensis MPA1U2]
          Length = 177

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           K K  ++ LRKQM ++    +FEEAAR+RDE+K L +
Sbjct: 131 KIKKEIEELRKQMQISIQGEHFEEAARLRDEVKVLSA 167


>gi|315618286|gb|EFU98876.1| transcription-repair coupling factor [Escherichia coli 3431]
          Length = 1148

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 119/307 (38%), Gaps = 46/307 (14%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
             YD + P                 ++ I   R S    L      +++  V+ +     
Sbjct: 76  LPYDSFSP-----------------HQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVC 118

Query: 287 VESY--SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
             S+  S  +V +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E
Sbjct: 119 PHSFLHSHALV-MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE 177

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + +
Sbjct: 178 -LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWR 232

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                        E +R       D E +    S  ++     Y       EP P LF Y
Sbjct: 233 ----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSY 275

Query: 465 IPEDSLL 471
            P ++LL
Sbjct: 276 FPANTLL 282



 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|313801696|gb|EFS42936.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
 gi|313809686|gb|EFS47420.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
 gi|313827484|gb|EFS65198.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
 gi|313830023|gb|EFS67737.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
 gi|313838410|gb|EFS76124.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
 gi|314918026|gb|EFS81857.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
 gi|314920401|gb|EFS84232.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
 gi|314956494|gb|EFT00782.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
 gi|314957338|gb|EFT01441.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
 gi|314967660|gb|EFT11759.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
 gi|314975747|gb|EFT19842.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
 gi|315095792|gb|EFT67768.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
 gi|315098853|gb|EFT70829.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
 gi|327442653|gb|EGE89307.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
 gi|327452701|gb|EGE99355.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
 gi|327453458|gb|EGF00113.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
 gi|328761493|gb|EGF75017.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL099PA1]
          Length = 564

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 64/126 (50%), Gaps = 8/126 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G+  +LV  ++  
Sbjct: 305 KVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVAA 364

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVILYADT-----ITKSI 697
            G+D+   G+  +++ +     ++    I   GRA A+ +   ++ +AD      I K++
Sbjct: 365 RGIDV--TGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADVTRWKLINKAL 422

Query: 698 QLAIDE 703
            L + E
Sbjct: 423 NLELSE 428


>gi|259500990|ref|ZP_05743892.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners DSM 13335]
 gi|302190561|ref|ZP_07266815.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus iners AB-1]
 gi|309803755|ref|ZP_07697841.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 11V1-d]
 gi|309804668|ref|ZP_07698733.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 09V1-c]
 gi|309806978|ref|ZP_07700960.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 03V1-b]
 gi|309808565|ref|ZP_07702461.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 01V1-a]
 gi|309809614|ref|ZP_07703471.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           2503V10-D]
 gi|312871555|ref|ZP_07731648.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           3008A-a]
 gi|312872588|ref|ZP_07732656.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2062A-h1]
 gi|312874281|ref|ZP_07734313.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2052A-d]
 gi|312874733|ref|ZP_07734752.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2053A-b]
 gi|315653950|ref|ZP_07906866.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners ATCC 55195]
 gi|325912398|ref|ZP_08174793.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           143-D]
 gi|325913097|ref|ZP_08175467.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           60-B]
 gi|329920540|ref|ZP_08277272.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           1401G]
 gi|259167684|gb|EEW52179.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners DSM 13335]
 gi|308164164|gb|EFO66425.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 11V1-d]
 gi|308166060|gb|EFO68278.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 09V1-c]
 gi|308166598|gb|EFO68795.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 03V1-b]
 gi|308168193|gb|EFO70315.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 01V1-a]
 gi|308170095|gb|EFO72131.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           2503V10-D]
 gi|311089478|gb|EFQ47903.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2053A-b]
 gi|311090154|gb|EFQ48566.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2052A-d]
 gi|311091950|gb|EFQ50326.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092950|gb|EFQ51301.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           3008A-a]
 gi|315488646|gb|EFU78292.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners ATCC 55195]
 gi|325475740|gb|EGC78911.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           143-D]
 gi|325477518|gb|EGC80660.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           60-B]
 gi|328936216|gb|EGG32669.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           1401G]
          Length = 487

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT     R      +H ++   +R+ +++  + GK D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELTRGFQARGYDAAGIHGDLTQTKRMSVLKRFKQGKLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            G+  + + D      S    I   GRA +N
Sbjct: 306 SGVSHVYNYDIPQDPDSYVHRIGRTGRAGKN 336


>gi|225568648|ref|ZP_03777673.1| hypothetical protein CLOHYLEM_04726 [Clostridium hylemonae DSM
           15053]
 gi|225162576|gb|EEG75195.1| hypothetical protein CLOHYLEM_04726 [Clostridium hylemonae DSM
           15053]
          Length = 1113

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           + V + H ++K  +  +I+ D   G+ DVLV   ++  GLDI     + I DAD+ G   
Sbjct: 800 VSVAFAHGQMKEHQLEKIMYDFINGEIDVLVSTTIIETGLDISNVNTMIIHDADRLGL-- 857

Query: 667 SKTSLIQTIGRAARN 681
             + L Q  GR  R+
Sbjct: 858 --SQLYQLRGRVGRS 870


>gi|190346829|gb|EDK39007.2| hypothetical protein PGUG_03105 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 676

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L  + I  +Y+  E    ER  II D + G  +VL  + +  EG DIP    + + 
Sbjct: 286 LCGVLQSQGINAQYVTGETAKHERRAIIEDFKNGTINVLCNVQVFTEGTDIPNIDSLFLA 345

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
              K     S+  L+Q IGR  R
Sbjct: 346 RPTK-----SRPLLVQMIGRGLR 363


>gi|154147980|ref|YP_001406586.1| ATP-dependent DNA helicase RecG [Campylobacter hominis ATCC
           BAA-381]
 gi|153803989|gb|ABS50996.1| ATP-dependent DNA helicase RecG [Campylobacter hominis ATCC
           BAA-381]
          Length = 611

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSR-EKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           DI+ +  +  + P+ DQ  AI  +   + S     ++++G  GSGKT  +      M  P
Sbjct: 216 DISAWISKLPFKPTNDQQKAIDDIKNDLSSPIASKRVIMGDVGSGKTLVILAA-ALMNYP 274

Query: 196 AI--VMAPNKILAAQLYSEFKNFFP 218
            I  +MAP  ILA Q+++E K   P
Sbjct: 275 QISYLMAPTSILAEQIFNEAKRLLP 299


>gi|149038677|gb|EDL92966.1| rCG22008, isoform CRA_c [Rattus norvegicus]
          Length = 638

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  QG R ++   TK+ A++L++    +    + +H ++   +R   ++  R G F VLV
Sbjct: 287 SGHQG-RTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFRNGNFGVLV 344

Query: 638 GINLLREGLDIPECGLV 654
             N+   GLDIPE  LV
Sbjct: 345 ATNVAARGLDIPEVDLV 361


>gi|145641878|ref|ZP_01797453.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           R3021]
 gi|145273500|gb|EDK13371.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
           22.4-21]
          Length = 390

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+ L   NI +  +H  +K  E+ +++   +  + D+LV   ++  G+D+P   L+ 
Sbjct: 206 EDLTKALPMLNIGL--VHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMI 263

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           I +A++ G     + L Q  GR  R   +   V++Y   + K  Q
Sbjct: 264 IENAERLGL----SQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQ 304


>gi|123967589|ref|YP_001008447.1| hypothetical protein A9601_00521 [Prochlorococcus marinus str.
           AS9601]
 gi|123197699|gb|ABM69340.1| Hypothetical protein A9601_00521 [Prochlorococcus marinus str.
           AS9601]
          Length = 1341

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 8/82 (9%)

Query: 607 IRVRYMHSEVKTLER---IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           I+  Y+   +KT ER   IE +++L  G+  +L     L EG+D+P    V  +D     
Sbjct: 481 IQSDYVSGAMKTKERNDKIEKLKNLDKGEIRILTNAKCLSEGVDVPTLDGVGFIDP---- 536

Query: 664 FLRSKTSLIQTIGRAARNVNSK 685
              S+  +IQ +GRA R  + K
Sbjct: 537 -RYSQIDIIQAVGRAIRKSDDK 557


>gi|187478413|ref|YP_786437.1| ATP-dependent DNA helicase RecG [Bordetella avium 197N]
 gi|115422999|emb|CAJ49529.1| ATP-dependent DNA helicase [Bordetella avium 197N]
          Length = 684

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++RV  +H  +   E+  ++   R G  D+LV   ++  G+D+P   L+ I  A++ G  
Sbjct: 508 DLRVGLVHGRLPQTEKAAVMEAFRAGDVDLLVATTVIEVGVDVPNASLMVIEHAERFGL- 566

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITK 695
                L Q  GR  R       V+LY   +++
Sbjct: 567 ---AQLHQLRGRVGRGEAESVCVLLYQTPLSQ 595


>gi|327329925|gb|EGE71679.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL097PA1]
          Length = 564

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 64/126 (50%), Gaps = 8/126 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G+  +LV  ++  
Sbjct: 305 KVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVAA 364

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVILYADT-----ITKSI 697
            G+D+   G+  +++ +     ++    I   GRA A+ +   ++ +AD      I K++
Sbjct: 365 RGIDV--TGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADVTRWKLINKAL 422

Query: 698 QLAIDE 703
            L + E
Sbjct: 423 NLELSE 428


>gi|307702811|ref|ZP_07639761.1| transcription-repair coupling factor [Streptococcus oralis ATCC
           35037]
 gi|307623667|gb|EFO02654.1| transcription-repair coupling factor [Streptococcus oralis ATCC
           35037]
          Length = 1166

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 849 IGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 904

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 905 STLYQLRGRVGR---SNRIAYA 923



 Score = 37.7 bits (86), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 91/197 (46%), Gaps = 15/197 (7%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E  +   +++      A ++ S+  +      V     
Sbjct: 23  KKRQLILGLSTSTKAIAIASSLEK-ENKIVLLTSTYGEAERIISDLLSLLGEELV----- 76

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   ++  P  +  +  +  I  +++ +R  +  S   +   +V +  +    + S 
Sbjct: 77  -YPFLVDDS--PMVEFLMSSQEKIISRVEALRFLSDPS---KKGILVCNIAASRLILPSP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
             + +  +++ +G+  +Q ELL  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 131 TRFKESTIKIAVGEEYDQHELLHQLKEIGYRKVTQVRTQGEFSIRGDILDIFEMSQLE-- 188

Query: 347 AWRVSMFGNDIEEISEF 363
            +R+  FG++++ I  F
Sbjct: 189 PFRIEFFGDEVDGIRTF 205


>gi|293570719|ref|ZP_06681769.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E980]
 gi|291609191|gb|EFF38463.1| ATP-dependent DNA helicase RecG [Enterococcus faecium E980]
          Length = 678

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 29/197 (14%)

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELE-----QCQGIIVEQIIRPTGLVDPPVEIRSART- 566
           LR + W   RP  + ++ATP    L      +    I++++  P G +  P+E R  RT 
Sbjct: 395 LREKGW---RPDVLFMTATPIPRTLAITAYGEMDVSIIDEL--PAGRI--PIETRWVRTP 447

Query: 567 QVEDVYDEI--NLAAQQGLRILLTVLTKRMAEDLTEY--LYER-------NIRVRYMHSE 615
           Q++ V D     LA    + ++  ++ +  A D+     +YE+          V  +H +
Sbjct: 448 QLDSVLDWTRKELARGHQMYVICPLIEESEALDVKNAVEIYEKLRELFAPKYEVGLLHGK 507

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  E+  I+   +  +  +LV   ++  G+++P   ++ I+DAD+ G       L Q  
Sbjct: 508 MKNQEKEVIMEAFKDNQMQILVSTTVIEVGVNMPNATVMLIMDADRFGL----AQLHQLR 563

Query: 676 GRAARNVN-SKVILYAD 691
           GR  R  + S  IL A+
Sbjct: 564 GRVGRGSDASYCILVAN 580


>gi|291007073|ref|ZP_06565046.1| ATP-dependent DNA helicase RecG [Saccharopolyspora erythraea NRRL
           2338]
          Length = 740

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H  +   ++  ++R    G  DVLV   ++  G+++P   ++ I+DAD+ G  
Sbjct: 556 SLRLGVLHGRLPADDKDAVMRGFAAGDIDVLVATTVVEVGVNVPNATVMVIMDADRFGV- 614

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R     + L
Sbjct: 615 ---SQLHQLRGRVGRGSAPGLCL 634


>gi|289705155|ref|ZP_06501559.1| ATP-dependent RNA helicase DeaD family protein [Micrococcus luteus
           SK58]
 gi|289558183|gb|EFD51470.1| ATP-dependent RNA helicase DeaD family protein [Micrococcus luteus
           SK58]
          Length = 470

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TKR A  + + L  R      +H ++    R + +R  R GK D+LV  ++  
Sbjct: 293 RTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAFRNGKVDILVATDVAA 352

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+D+ +   V    A ++     + + +  +GR  R  N  V +
Sbjct: 353 RGIDVDDVTHVFNFQAPED-----EKTYVHRVGRTGRAGNKGVAV 392


>gi|260597486|ref|YP_003210057.1| transcription-repair coupling factor [Cronobacter turicensis z3032]
 gi|260216663|emb|CBA29998.1| Transcription-repair-coupling factor [Cronobacter turicensis z3032]
          Length = 1167

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 58/303 (19%), Positives = 116/303 (38%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFVSYYDYY 232
           +TG+     +A++ E    P  ++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 41  LTGAACAVEVAEMAERHAGPLALIAPDMQTALRLHDEIQQFTESLVMNLADWETLPYDSF 100

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 101 SPHQEI------ISSRLSTLYQLPGMQRGVLILPVNTLMQR-----VCPHSFLHGHALV- 148

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   ++ G  + +  L + L +  Y+  D  +  G +   G  ++++P   E   +
Sbjct: 149 --------MQKGQQLSRDTLRAQLDQAGYRHVDQVMAHGEYATRGALLDLYPMGSEQ-PY 199

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + + R  
Sbjct: 200 RIDFFDDEIDSLRLFDVDTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRDRF- 254

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
                            +  D E +    S  ++     Y       EP P LF Y P++
Sbjct: 255 ----------------EVKRDPEHIYQQVSKGTLPAGIEYWQPLFFNEPLPPLFSYFPKN 298

Query: 469 SLL 471
           +L+
Sbjct: 299 TLV 301


>gi|239928711|ref|ZP_04685664.1| ATP-dependent DNA helicase RecG [Streptomyces ghanaensis ATCC
           14672]
 gi|291437035|ref|ZP_06576425.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291339930|gb|EFE66886.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 740

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +H  +   ++  ++R    G+ DVLV   ++  G+++P    + I+DAD+ G  
Sbjct: 556 GLRVEVLHGRMPPDDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGV- 614

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R     + L
Sbjct: 615 ---SQLHQLRGRVGRGSAPGLCL 634


>gi|259906863|ref|YP_002647219.1| ATP-dependent RNA helicase RhlB [Erwinia pyrifoliae Ep1/96]
 gi|224962485|emb|CAX53940.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283476655|emb|CAY72483.1| putative ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163]
 gi|310766111|gb|ADP11061.1| ATP-dependent RNA helicase RhlB [Erwinia sp. Ejp617]
          Length = 430

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   ED+  +L     RV  +  +V   +R+ I+ D   G  D+LV  ++  
Sbjct: 258 RTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVATDVAA 317

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNS 684
            GL IP    V   D   D+E ++      I   GRA  N +S
Sbjct: 318 RGLHIPAVTHVFNYDLPDDREDYVHR----IGRTGRAGANGHS 356


>gi|255659238|ref|ZP_05404647.1| transcription-repair coupling factor [Mitsuokella multacida DSM
           20544]
 gi|260848692|gb|EEX68699.1| transcription-repair coupling factor [Mitsuokella multacida DSM
           20544]
          Length = 1129

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 4/148 (2%)

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY--GIGSVESYS 291
           P   +P  DT+  K ++ +++    R      L+     IV++        G+G  E + 
Sbjct: 78  PIVELPEVDTFDVKAAAKSQERAARRMEVLGRLVRGEHIIVLARTEAAVQKGMGRNE-FK 136

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           ++ + L++G+ + ++ELL  LV   Y+  +     G F V G  ++IF  +   V  RV 
Sbjct: 137 RLSLTLRMGEVLPREELLERLVDLGYEHAEEVERVGQFSVRGGIVDIFAINAA-VPVRVE 195

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKI 379
            F ++I+ + EF   T +  +NV    I
Sbjct: 196 YFDDEIDSLREFDLDTKRSTKNVGAATI 223


>gi|224543056|ref|ZP_03683595.1| hypothetical protein CATMIT_02256 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523996|gb|EEF93101.1| hypothetical protein CATMIT_02256 [Catenibacterium mitsuokai DSM
           15897]
          Length = 1150

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+   H ++   E  +++ D    K+D+LV   ++  G+DIP    + I +ADK G    
Sbjct: 838 RIGVGHGQMDKTELEDVMTDFVEKKYDILVCTTIIETGIDIPNANTIIIENADKFGL--- 894

Query: 668 KTSLIQTIGRAARN 681
              L Q  GR  R+
Sbjct: 895 -AQLYQIKGRVGRS 907


>gi|189460649|ref|ZP_03009434.1| hypothetical protein BACCOP_01291 [Bacteroides coprocola DSM 17136]
 gi|189432608|gb|EDV01593.1| hypothetical protein BACCOP_01291 [Bacteroides coprocola DSM 17136]
          Length = 820

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           II D   GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  G
Sbjct: 615 IIADFEDGKTDILIGTQMVSKGLDFDRVSVVGILNADSMMNYPDFRSYERAFQLMAQVAG 674

Query: 677 RAAR-NVNSKVIL 688
           RA R N    V+L
Sbjct: 675 RAGRKNKQGLVVL 687


>gi|145476883|ref|XP_001424464.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391528|emb|CAK57066.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  E L   + E N  V  +H  +   +R EI+RD + G   VL+G ++LR  LDI  
Sbjct: 270 TKQKCEWLVNKMLESNFTVVQIHEGMSQQQRNEIMRDYKQGIKRVLIGTDILRRCLDIEY 329

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             L+   D        SK   I  IGR  +
Sbjct: 330 VSLIINYDVPT-----SKELYILRIGRKGK 354


>gi|221134070|ref|ZP_03560375.1| ATP-dependent DNA helicase RecG [Glaciecola sp. HTCC2999]
          Length = 695

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 589 VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           VL  + AED    L     ++R+  +H  +K  E+  I+   +  + DVLV   ++  G+
Sbjct: 500 VLQSQAAEDTFIALRTALTDLRIGLVHGRMKPAEKQTIMAQFKAAELDVLVATTVIEVGV 559

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691
           D+P   L+ I + ++ G       L Q  GR  R ++ S  +L  D
Sbjct: 560 DVPNASLMIIENPERLGL----AQLHQLRGRVGRGSIESHCVLMYD 601


>gi|116628137|ref|YP_820756.1| primosome assembly protein PriA [Streptococcus thermophilus LMD-9]
 gi|116101414|gb|ABJ66560.1| replication restart DNA helicase PriA [Streptococcus thermophilus
           LMD-9]
          Length = 798

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  GRA R 
Sbjct: 599 GKADILLGTQMIAKGLDFPNVTLVGVLNADTSLNLPDFRSAERTFQLLTQVAGRAGRG 656



 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 24/145 (16%)

Query: 97  QTMTPSVQALARLIQSDNPLLKN--GKIWTPHRSWS-------INNHSKDIT-------- 139
           +T+  S +A  RL   D  L KN  GK+   H+ +S       I   + DIT        
Sbjct: 189 ETLDISQRAKKRLELRDFLLEKNEPGKLVDLHKLFSRDVVKFFIEAGALDITEVEVNRAD 248

Query: 140 -FFQM--QTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTFTMAKVIE---AM 192
            +F+   +TD+     Q A   +++ G I    K  LL GVTGSGKT     +IE   AM
Sbjct: 249 SYFEKVEKTDFLELNAQQAHAVEVMTGQIGHGGKPFLLEGVTGSGKTEVYLHLIERTLAM 308

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFF 217
            + AIV+ P   L  Q+ + F + F
Sbjct: 309 GKTAIVLVPEISLTPQMTNRFISRF 333


>gi|116051990|ref|YP_789167.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587211|gb|ABJ13226.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 449

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 10/144 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  E+L   L  + I    +H +     R+  ++  + G+ D+LV  ++   GLDI E
Sbjct: 253 TRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAARGLDIEE 312

Query: 651 CGLVAILDAD--KEGFLRSKTSLIQTIGRAARNVNSKVILYADTI--TKSIQLAIDETTR 706
             LV   D     E ++      I   GRA  +  +  ++ AD +    +I+  I +T +
Sbjct: 313 MPLVVNFDLPIVAEDYVHR----IGRTGRAGASGQAVSLVCADEVELLAAIETLIGQTLQ 368

Query: 707 RREKQLEHNKKHNINPQSVKEKIM 730
           RRE+  +   +H + PQ+    ++
Sbjct: 369 RREEP-DFAPEHRV-PQTAPGGVV 390


>gi|260774297|ref|ZP_05883212.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
 gi|260611258|gb|EEX36462.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
          Length = 633

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 10/136 (7%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLIARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
           LD+P    V   D   D E ++      I   GRA R    K IL   T    +   I+ 
Sbjct: 309 LDVPRINHVFNYDIPFDVESYIHR----IGRTGRAGR--KGKAILLVRTNQIRMLRTIER 362

Query: 704 TTRR--REKQLEHNKK 717
            TR    E QL H  K
Sbjct: 363 VTRTSMEEIQLPHRDK 378


>gi|238897365|ref|YP_002923042.1| transcription-repair ATP-dependent coupling factor [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465120|gb|ACQ66894.1| transcription-repair ATP-dependent coupling factor [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 1151

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 95/238 (39%), Gaps = 16/238 (6%)

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
           V+ L  +TGS      A++IE     AI++ P++    QL  E + F  H          
Sbjct: 17  VRQLGQLTGSACVLECAEIIERHLGLAILITPDRQTGLQLEYELQAFISH---------- 66

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVE 288
               P + +P  +T      S ++ I   R +    L  R+   I++   + +  I    
Sbjct: 67  ----PISILPDWETLPYDHFSPHQSIISDRLACLYQLPSRDRGAIIIPINTFMQRICPYS 122

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
              +  V LK    +    L   L K  Y+     +  G F + G  ++++P   E+  +
Sbjct: 123 FLHRHAVFLKKNQRLSLDLLRVQLDKAGYRSVHQVMEHGEFAIRGGLLDLYPMGSEE-PY 181

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
           R+  F N+IE +  F   T + +  +E I +     +   +  + +     +E+ ++R
Sbjct: 182 RIDFFDNEIESLRVFDVDTQRTLSEIEQINLLPAHEFPIDKTAIESFRSQWREQFEIR 239


>gi|311740676|ref|ZP_07714503.1| probable helicase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304196|gb|EFQ80272.1| probable helicase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 1040

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE +     +  I  R + S++   +R + I+DL  G   VL  +++  EG+DIP    +
Sbjct: 572 AEYMARQFQQFGIPTRAVTSDLTATDRAQAIKDLETGDVKVLFSVDIFNEGVDIPAVNTL 631

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR 680
            +L   +     S    +Q +GR  R
Sbjct: 632 LLLRPTQ-----SPVVFLQQLGRGLR 652


>gi|222476086|ref|YP_002564607.1| type III restriction protein res subunit [Halorubrum lacusprofundi
           ATCC 49239]
 gi|222454457|gb|ACM58721.1| type III restriction protein res subunit [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 466

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           + KT ER EI+   R G++ +LV   +L EG+D+P   +  IL         SK    Q 
Sbjct: 373 QTKTDERTEILERFRTGEYSMLVTSQVLDEGIDVPAANVGIILSGSA-----SKRQYAQR 427

Query: 675 IGRAARNVNSK 685
           +GR  R  + +
Sbjct: 428 LGRILRPTDDR 438


>gi|194755862|ref|XP_001960198.1| GF13246 [Drosophila ananassae]
 gi|190621496|gb|EDV37020.1| GF13246 [Drosophila ananassae]
          Length = 1727

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 10/117 (8%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G+ ++++  ++L EG+D+  C  V ILD+     L++    +QT GRA      
Sbjct: 454 IQQFRDGEANLMICSSVLEEGIDVQACNYVLILDS-----LKTFNMYVQTKGRARSKEAV 508

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN-----PQSVKEKIMEVIDPI 736
            +I  AD  T  +   I +  +      E+ K   +      P  + E   ++I P 
Sbjct: 509 FIIFSADANTGEVSKQIGQYRQAHSDISEYLKGRVLERALPLPNEITEHFQDIIPPF 565


>gi|168034811|ref|XP_001769905.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|168034871|ref|XP_001769935.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678811|gb|EDQ65265.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678841|gb|EDQ65295.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 582

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 586 LLTVLTKRMA--EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           L  V  +R A  +++T+ L E+ ++   +H      ER   +RD R G  ++LV  ++  
Sbjct: 390 LTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALRDFRKGTTNILVATDVAS 449

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+   G+  +++ D     ++    +  IGR  R
Sbjct: 450 RGLDV--TGVAHVINLD---LPKTMEDYVHRIGRTGR 481


>gi|159469610|ref|XP_001692956.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas
           reinhardtii]
 gi|158277758|gb|EDP03525.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas
           reinhardtii]
          Length = 571

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++ V T+R  +++  ++ E       +H      +R   I+  R G ++VL+  ++  
Sbjct: 417 RVIVFVNTQRQCDNVHRHMDELGYHCTILHGGKTQDQREAGIKGFRDGTYNVLIATDVAG 476

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+P+  LV  ++ D    + + T  I   GRA R
Sbjct: 477 RGIDVPDVALV--VNYDMPTNIENYTHRIGRTGRAGR 511


>gi|322804977|emb|CBZ02536.1| DNA/RNA helicase of DEAD/DEAH box family [Clostridium botulinum
           H04402 065]
          Length = 988

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 15/125 (12%)

Query: 564 ARTQVEDVYDEINLAAQQGLRI--LLTVLTKRMAEDLTEYLYERNIRVRYMHSEV----- 616
           A  +V+ + D+IN     G R+  L+    K+ A++L++    +  +   +  E      
Sbjct: 448 AEERVKHIIDKINFYGYCGERVKGLIFCSDKKEAKELSDIFNTKGYKTVALTGESSQEER 507

Query: 617 -KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            K +ER+E  +D  L   D +  +++  EG+DIP    V +L   K     S    +Q +
Sbjct: 508 EKAIERLE--QDETLNSLDYIFTVDIFNEGVDIPSVNQVVMLRPTK-----SSIIFVQQL 560

Query: 676 GRAAR 680
           GR  R
Sbjct: 561 GRGLR 565


>gi|308050222|ref|YP_003913788.1| transcription-repair coupling factor [Ferrimonas balearica DSM
           9799]
 gi|307632412|gb|ADN76714.1| transcription-repair coupling factor [Ferrimonas balearica DSM
           9799]
          Length = 1156

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H +++  E  +++ D   G+F++LV   ++  G+DIP    + I  ADK G    
Sbjct: 841 RVGIAHGQMRERELEQVMSDFHHGRFNLLVCTTIIETGIDIPSANTILIERADKFGL--- 897

Query: 668 KTSLIQTIGRAARN 681
              L Q  GR  R+
Sbjct: 898 -AQLHQLRGRVGRS 910


>gi|289664638|ref|ZP_06486219.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 1154

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E   R+   H ++   E  +++ D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRDLSELVPE--ARIGIAHGQMPERELEQVMLDFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD+ G       L Q  GR  R+
Sbjct: 890 TIIINRADRFGL----AQLHQLRGRVGRS 914


>gi|282866591|ref|ZP_06275633.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282558493|gb|EFB64053.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 537

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL ++    TKR A D+ E L  R      +H ++    R + +R  R GK DVLV
Sbjct: 270 AESRGLAMIF-CRTKRTAADIAEQLERRGFASGAVHGDLGQGAREQALRAFRNGKVDVLV 328

Query: 638 GINLLREGLDI 648
             ++   G+D+
Sbjct: 329 CTDVAARGIDV 339


>gi|281337523|gb|EFB13107.1| hypothetical protein PANDA_018037 [Ailuropoda melanoleuca]
          Length = 491

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++  
Sbjct: 334 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAA 393

Query: 644 EGLDI 648
            GLDI
Sbjct: 394 RGLDI 398


>gi|288573129|ref|ZP_06391486.1| type III restriction protein res subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568870|gb|EFC90427.1| type III restriction protein res subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 455

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L E L  R ++   +    K  +R  I+  +R G+  VLV +N+  EGLD+PE  L A++
Sbjct: 333 LCEELEGRGVKALGISGRTKKADRPRILDAVRSGETKVLVAVNVADEGLDLPE--LSALV 390

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK 685
            A      RS     Q IGR  R    K
Sbjct: 391 LAAPS---RSPAKAEQRIGRILRPCEGK 415


>gi|170768251|ref|ZP_02902704.1| transcription-repair coupling factor [Escherichia albertii TW07627]
 gi|170123017|gb|EDS91948.1| transcription-repair coupling factor [Escherichia albertii TW07627]
          Length = 1148

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 122/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L  E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLQDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDTLRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 231 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.7 bits (86), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|113868657|ref|YP_727146.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
 gi|113527433|emb|CAJ93778.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
          Length = 646

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I+ T  TKR A+ L E L +       +H ++    R   +  LR G   VLV  ++   
Sbjct: 323 IVFTA-TKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNLRVLVATDVAAR 381

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           G+D+P+   V   D  K+         +  IGR  R   S   +
Sbjct: 382 GIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGTAI 420


>gi|53722315|ref|YP_111300.1| DEAD/DEAH box helicase [Burkholderia pseudomallei K96243]
 gi|52212729|emb|CAH38761.1| putative DEAD/DEAH box helicase [Burkholderia pseudomallei K96243]
          Length = 1599

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSE 615
           P+E   A    E +YD I   A      L+ V T+RMAE    +L +R     +   H  
Sbjct: 259 PLEPVMANDVWERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAHHGS 318

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +Q +
Sbjct: 319 LAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFLQRV 373

Query: 676 GRAARNVNS 684
           GR+  ++  
Sbjct: 374 GRSGHHIGG 382


>gi|38233611|ref|NP_939378.1| putative helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199871|emb|CAE49537.1| Putative helicase [Corynebacterium diphtheriae]
          Length = 1043

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 5/99 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G++ L   ++   A  +  Y  ++ +    +  +     R   + DL+ G+  V+  ++L
Sbjct: 556 GVKALGFCVSVEHATFMAAYFSKQGVPAAVLSGQDNATTRRNRLDDLKTGRIKVIFSVDL 615

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             EGLDIPE   V +L   +   L      +Q IGR  R
Sbjct: 616 FNEGLDIPEINTVLLLRPTQSPVL-----FLQQIGRGLR 649


>gi|330443885|ref|YP_004376871.1| transcription-repair coupling factor [Chlamydophila pecorum E58]
 gi|328806995|gb|AEB41168.1| transcription-repair coupling factor [Chlamydophila pecorum E58]
          Length = 1070

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 15/131 (11%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K++RE++E+++   V    +L+Q     L+  +  TP  ++    H +++  F     Y 
Sbjct: 493 KRSRELTEKSL---VAYAEKLLQ-----LEAQRSTTP--AFVHPPHGEEVIKFAETFPYE 542

Query: 149 PSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ  AI Q+ + + S + + +L+ G  G GKT   M   ++A+    R  IVM P  
Sbjct: 543 ETPDQLKAIEQIYEDMMSEKLMDRLICGDAGFGKTEVIMRAAVKAVCDGHRQVIVMVPTT 602

Query: 204 ILAAQLYSEFK 214
           ILA Q Y  FK
Sbjct: 603 ILAHQHYETFK 613


>gi|261335430|emb|CBH18424.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 556

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +    ++L E +  + +R+  M++++   ER E + + RLGK  VLV   LL  
Sbjct: 369 VLIFVQSIERTKELHEEIQCQGLRIAIMNAKMTHEERDETMMNFRLGKIWVLVTTELLSR 428

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G V   D        +  S I  +GR  R
Sbjct: 429 GIDFKNVGTVINFDIPT-----TVESYIHRVGRCGR 459


>gi|255726288|ref|XP_002548070.1| ATP-dependent RNA helicase DDX19B [Candida tropicalis MYA-3404]
 gi|240133994|gb|EER33549.1| ATP-dependent RNA helicase DDX19B [Candida tropicalis MYA-3404]
          Length = 496

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V  K  A  L   + +       +H  ++T +R  +I D R G+  VL+  N+L  G
Sbjct: 348 IIFVEKKETANQLYAKMKQEGHTCSILHGGLETADRDRLIDDFREGRSKVLITTNVLARG 407

Query: 646 LDIPECGLVAILDADKEGFLRSKTSL-IQTIGRAAR 680
           +DI    +V   D   + F +   S  +  IGR  R
Sbjct: 408 IDIASVSMVVNYDLPTDKFGKPDPSTYLHRIGRTGR 443


>gi|224101241|ref|XP_002312197.1| dicer-like protein [Populus trichocarpa]
 gi|222852017|gb|EEE89564.1| dicer-like protein [Populus trichocarpa]
          Length = 1468

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 10/106 (9%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           L  LL+ L  +     T+Y+   N     + S+ + ++  EI+ + R G  +++V  ++L
Sbjct: 454 LESLLSKLLPKHGSWKTKYIAGNN---SGLQSQTRKIQN-EIVEEFRKGMVNIIVATSIL 509

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            EGLD+  C LV   D        + +S IQ+ GR AR  NS  +L
Sbjct: 510 EEGLDVQSCNLVIRFDPSA-----TVSSFIQSRGR-ARMQNSDYLL 549


>gi|169827061|ref|YP_001697219.1| primosomal protein N' [Lysinibacillus sphaericus C3-41]
 gi|168991549|gb|ACA39089.1| Primosomal protein N' [Lysinibacillus sphaericus C3-41]
          Length = 803

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTI 675
           EI+     G+ D+L+G  ++ +GLD P   LV +L AD    L       R+   L Q  
Sbjct: 596 EILAAFGEGQADILLGTQMIAKGLDFPNITLVGVLSADTSLHLPDYRAAERTFQLLTQVS 655

Query: 676 GRAARN 681
           GRA R+
Sbjct: 656 GRAGRH 661


>gi|61563575|gb|AAX46760.1| putative DEAD-box family RNA helicase PL10 [Carassius auratus]
          Length = 582

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 5/117 (4%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   ++ L  L+ V TK+ A+ L ++LY        +H +    +R E +   R G+
Sbjct: 459 DLLNATGKESL-TLVFVETKKGADSLEDFLYREGYSCTSIHGDRTQRDREEALHQFRSGR 517

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N K
Sbjct: 518 CPILVATAVAARGLDISNVKHVINFDLSSDIEEYVHRIGRTGRVGNLGLATSFFNDK 574


>gi|126457551|ref|YP_001075778.1| putative ATP-dependent helicase lhr [Burkholderia pseudomallei
           1106a]
 gi|242313618|ref|ZP_04812635.1| putative ATP-dependent helicase lhr [Burkholderia pseudomallei
           1106b]
 gi|126231319|gb|ABN94732.1| putative ATP-dependent helicase lhr [Burkholderia pseudomallei
           1106a]
 gi|242136857|gb|EES23260.1| putative ATP-dependent helicase lhr [Burkholderia pseudomallei
           1106b]
          Length = 1599

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSE 615
           P+E   A    E +YD I   A      L+ V T+RMAE    +L +R     +   H  
Sbjct: 259 PLEPVMANDVWERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAHHGS 318

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +Q +
Sbjct: 319 LAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFLQRV 373

Query: 676 GRAARNVNS 684
           GR+  ++  
Sbjct: 374 GRSGHHIGG 382


>gi|327441097|dbj|BAK17462.1| RecG-like helicase [Solibacillus silvestris StLB046]
          Length = 679

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 12/125 (9%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E L  Y   R   +  MH  + + E+  ++R    GK  VLV   ++  G+++P    + 
Sbjct: 489 EQLKAYFGTR-FEIGLMHGRLHSDEKDAVMRAFSDGKIHVLVSTTVVEVGVNVPNATFMT 547

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTIT---KSIQLAIDETT---RRR 708
           I DA++ G       L Q  GR  R  + S  +L AD  T   K   +++ ET    R  
Sbjct: 548 IYDAERFGL----AQLHQLRGRVGRGEHQSYCVLIADPKTDEGKERMMSMTETNDGFRLA 603

Query: 709 EKQLE 713
           EK LE
Sbjct: 604 EKDLE 608


>gi|325972732|ref|YP_004248923.1| ATP-dependent DNA helicase RecG [Spirochaeta sp. Buddy]
 gi|324027970|gb|ADY14729.1| ATP-dependent DNA helicase RecG [Spirochaeta sp. Buddy]
          Length = 695

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 13/116 (11%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS++   E++ I+++ + G+   LV  +++  G+DIP    + I  AD+ G     ++L
Sbjct: 518 IHSKLDEEEKVHILKEYQGGRIAYLVSTSVVEVGIDIPNATCMVIEHADRFGL----SAL 573

Query: 672 IQTIGRAARNV--NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
            Q  GR  R+V  +   +++ D +T       DE  +R +   E N    I  Q +
Sbjct: 574 HQLRGRVGRSVLQSYCFLVFGDELT-------DEAKQRLKVMKESNDGFYIAEQDL 622


>gi|313109386|ref|ZP_07795348.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
 gi|310881850|gb|EFQ40444.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
          Length = 449

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 10/144 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  E+L   L  + I    +H +     R+  ++  + G+ D+LV  ++   GLDI E
Sbjct: 253 TRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAARGLDIEE 312

Query: 651 CGLVAILDAD--KEGFLRSKTSLIQTIGRAARNVNSKVILYADTI--TKSIQLAIDETTR 706
             LV   D     E ++      I   GRA  +  +  ++ AD +    +I+  I +T +
Sbjct: 313 MPLVVNFDLPIVAEDYVHR----IGRTGRAGASGQAVSLVCADEVELLAAIETLIGQTLQ 368

Query: 707 RREKQLEHNKKHNINPQSVKEKIM 730
           RRE+  +   +H + PQ+    ++
Sbjct: 369 RREEP-DFAPEHRV-PQTAPGGVV 390


>gi|315503693|ref|YP_004082580.1| dead/deah box helicase domain protein [Micromonospora sp. L5]
 gi|315410312|gb|ADU08429.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
          Length = 553

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 3/102 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL ++ T  TKR A+ + E L  R   V  +H ++    R   +R  R GK D LV
Sbjct: 262 AEGRGLTMIFT-RTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTLV 320

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
             ++   G+D+   G+  +++ D      + T  I   GRA 
Sbjct: 321 ATDVAARGIDV--TGVTHVINYDCPEDQDTYTHRIGRTGRAG 360


>gi|289596778|ref|YP_003483474.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|289534565|gb|ADD08912.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
          Length = 756

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 7/95 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E++E++   + G+++VLV  ++  EGLDIP   +V   +      + S+   IQ  GR  
Sbjct: 413 EQVELVEKFKKGEYNVLVATSVAEEGLDIPATDMVIFYEP-----VPSEIRSIQRRGRTG 467

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
           R    KV++   TI  +  +A   ++R +EK++++
Sbjct: 468 RARIGKVVIL--TIKGTRDIAYLWSSRNKEKKMKN 500


>gi|281347447|gb|EFB23031.1| hypothetical protein PANDA_001323 [Ailuropoda melanoleuca]
          Length = 613

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 384 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 442

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 443 SPILVATAVSARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 501

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 502 ---NITKDL 507


>gi|302870034|ref|YP_003838671.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302572893|gb|ADL49095.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 553

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 3/102 (2%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL ++ T  TKR A+ + E L  R   V  +H ++    R   +R  R GK D LV
Sbjct: 262 AEGRGLTMIFT-RTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTLV 320

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
             ++   G+D+   G+  +++ D      + T  I   GRA 
Sbjct: 321 ATDVAARGIDV--TGVTHVINYDCPEDQDTYTHRIGRTGRAG 360


>gi|260435284|ref|ZP_05789254.1| transcription-repair coupling factor [Synechococcus sp. WH 8109]
 gi|260413158|gb|EEX06454.1| transcription-repair coupling factor [Synechococcus sp. WH 8109]
          Length = 1203

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 85/180 (47%), Gaps = 29/180 (16%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L+ GD V+ + L  +L +  Y+R       G++   GD ++IFP   E +  R+  FG +
Sbjct: 156 LRKGDEVDLEALGETLAQLGYERVTTIEQEGSWSRRGDIVDIFPVSSE-LPVRLEFFGEE 214

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE-LEKEGR 415
           ++++ EF P + + +  V+ +++           T       I ++L+  + + LE+   
Sbjct: 215 LDKLREFDPASQRSLDPVDALRL-----------TPTGFGPLIADQLRETMPDGLEQ--- 260

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LL A+  EQ +          G+ + +    R L G   G  P +L +Y+P+ + + +DE
Sbjct: 261 LLGAEGTEQIL--------NGGTPEGM----RRLMGLAWGH-PASLLDYLPDTTTVVIDE 307


>gi|256825526|ref|YP_003149486.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256688919|gb|ACV06721.1| DNA/RNA helicase, superfamily II [Kytococcus sedentarius DSM 20547]
          Length = 1031

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A+ +     E  I  R +  E    ER  + +DL   K +V+   +L  EG+D+PE   V
Sbjct: 563 AQFMARKFTEAGIPARAVTGESNDEERSSVRQDLHHRKINVVFTADLYNEGVDLPEVDTV 622

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
             L   +     S T  +Q +GR  R  + K +L A
Sbjct: 623 LFLRPTE-----SSTIFLQQLGRGLRRHHDKAVLTA 653


>gi|225850461|ref|YP_002730695.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
 gi|225644960|gb|ACO03146.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
          Length = 403

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +G + ++   TKR A++L++ L         +H +    +R  ++RD R  + D+L
Sbjct: 246 LNENEGKKSIVFTETKRGADELSKKLRREGFNADAIHGDYSQAKRERVLRDFRRNRIDIL 305

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLDI    +V           R   S I  IGR  R
Sbjct: 306 VATDVAARGLDIKGVDVVY-----NYSLPRDVESYIHRIGRTGR 344


>gi|261420309|ref|YP_003253991.1| type III restriction protein res subunit [Geobacillus sp. Y412MC61]
 gi|319767119|ref|YP_004132620.1| type III restriction protein res subunit [Geobacillus sp. Y412MC52]
 gi|261376766|gb|ACX79509.1| type III restriction protein res subunit [Geobacillus sp. Y412MC61]
 gi|317111985|gb|ADU94477.1| type III restriction protein res subunit [Geobacillus sp. Y412MC52]
          Length = 815

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+   + R A+ L+EY      R   +HS+   + R + I  L   + D +  ++L  
Sbjct: 451 RTLVFCSSIRQADFLSEYFQRHGCRTVSLHSKQTAISRKQAIAMLERRELDAIFTVDLFN 510

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           EG+DIP    +  +   +     S T   Q +GR  R    K
Sbjct: 511 EGVDIPSVDTLLFVRPTE-----SLTVFTQQVGRGLRLYKGK 547


>gi|212639010|ref|YP_002315530.1| HKD family nuclease fused to DNA/RNA helicase of superfamily II
           [Anoxybacillus flavithermus WK1]
 gi|212560490|gb|ACJ33545.1| HKD family nuclease fused to DNA/RNA helicase of superfamily II
           [Anoxybacillus flavithermus WK1]
          Length = 811

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R A+ L  Y  E   R   +HS+   + R + I  L  G+ D +  ++L  EG+DIP   
Sbjct: 456 RQADFLANYFNEHGYRTVSLHSKQVHITRTKAIELLEKGELDAIFTVDLFNEGVDIPAV- 514

Query: 653 LVAILDADKEGFLR---SKTSLIQTIGRAAR 680
                  D   F+R   S T   Q +GR  R
Sbjct: 515 -------DTLLFVRPTESLTIFTQQVGRGLR 538


>gi|157123248|ref|XP_001660079.1| hypothetical protein AaeL_AAEL009460 [Aedes aegypti]
 gi|108874431|gb|EAT38656.1| conserved hypothetical protein [Aedes aegypti]
          Length = 1557

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+I  ++D R G  + L+   +  EG+D+ E  L+   D  K     + T  +Q IGR  
Sbjct: 503 EQIAAMKDFRSGACNTLIATCVAEEGIDVGEVDLIVCFDIAK-----NPTRFVQRIGRTG 557

Query: 680 RNVNSKVIL 688
           R    +V++
Sbjct: 558 RQRVGRVLM 566


>gi|84995424|ref|XP_952434.1| RNA helicase [Theileria annulata strain Ankara]
 gi|65302595|emb|CAI74702.1| RNA helicase, putative [Theileria annulata]
          Length = 628

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   ++ + E L  +LY        ++ ++   ER   I   + G +  L+  +L+ 
Sbjct: 393 QVIIFCNSREVVEQLYSFLYSGYKSSCKLYGDMLPTERHSTISSFKKGSYRTLIATDLVC 452

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            GLDIP  G+V   D       R   + +  +GR AR  NSK   Y 
Sbjct: 453 RGLDIPAVGVVINYDTP-----RHFHTFLHRVGRCARG-NSKGTSYT 493


>gi|332186818|ref|ZP_08388560.1| primosome assembly protein PriA [Sphingomonas sp. S17]
 gi|332013151|gb|EGI55214.1| primosome assembly protein PriA [Sphingomonas sp. S17]
          Length = 723

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 7/100 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            +R+A++ T    E  I V    +     +  E +  +  G  D++VG  L+ +G   P 
Sbjct: 488 VERIADEATALFPEAKIAVVTSDTIWSPAKAAEFVGRMEAGDIDIVVGTQLITKGYHFPN 547

Query: 651 CGLVAILDAD---KEGFLRSKTSLIQTI----GRAARNVN 683
             LV ++DAD     G LR+     Q I    GRA R   
Sbjct: 548 LTLVGVIDADLGLDGGDLRAAERTFQQIRQVSGRAGRGAK 587


>gi|329897890|ref|ZP_08272240.1| ATP-dependent DNA helicase RecG [gamma proteobacterium IMCC3088]
 gi|328921016|gb|EGG28435.1| ATP-dependent DNA helicase RecG [gamma proteobacterium IMCC3088]
          Length = 694

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 6/93 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H  +K+ E+  I+     G  D+LV   ++  G+D+P   L+ I + ++ G  
Sbjct: 518 DLRIGLIHGRLKSTEKESIMASFAAGHLDLLVATTVIEVGVDVPNASLMIIENPERLGL- 576

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITKS 696
                L Q  GR  R   +   V++Y   ++++
Sbjct: 577 ---AQLHQLRGRVGRGTIASHCVLMYQSPLSQT 606


>gi|323143206|ref|ZP_08077901.1| hypothetical protein HMPREF9444_00515 [Succinatimonas hippei YIT
           12066]
 gi|322417022|gb|EFY07661.1| hypothetical protein HMPREF9444_00515 [Succinatimonas hippei YIT
           12066]
          Length = 681

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D+++ + + +EG D P C +   +     G+ RS T ++Q IGRA R+   K
Sbjct: 336 LDIIIALGMAKEGFDWPWCEVALTV-----GYRRSLTEVVQIIGRATRDCEGK 383


>gi|296331162|ref|ZP_06873636.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674318|ref|YP_003865990.1| branch migrating ATP-dependent DNA helicase involved in DNA
           recombination and repair [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151806|gb|EFG92681.1| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412562|gb|ADM37681.1| branch migrating ATP-dependent DNA helicase involved in DNA
           recombination and repair [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 682

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  MH ++ + E+ +++R+    +  +LV   ++  G+++P   ++ I DAD+ G     
Sbjct: 504 VGLMHGKLHSDEKDQVMREFSANQCQILVSTTVVEVGVNVPNATIMVIYDADRFGL---- 559

Query: 669 TSLIQTIGRAARNVN-SKVILYAD 691
           + L Q  GR  R  + S  IL AD
Sbjct: 560 SQLHQLRGRVGRGEHQSFCILMAD 583


>gi|265751939|ref|ZP_06087732.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236731|gb|EEZ22201.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 768

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 13/166 (7%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           T +  +Y+ +   A  G + ++  ++   A  +  Y     +    + S    LER E +
Sbjct: 214 TGIRQLYESVRRYAA-GKKGIVYAVSIAHARQIAAYYSLHGVESVAIDSRTPALERKEQV 272

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL---IQTIGRAARNV 682
            D R GK  VLV +++  EG D P+   V +         R   SL   +Q +GR  R  
Sbjct: 273 EDFRRGKISVLVNVDIFSEGFDCPDVEFVQL--------ARPTLSLAKYLQQVGRGLRKS 324

Query: 683 NSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           ++K   +  D +       +    R  E   E     N  P++  E
Sbjct: 325 DNKESCVLIDNVGLHRIFGLPVRDRDWEAMFEGRMAGNAQPRTRME 370


>gi|239631182|ref|ZP_04674213.1| superfamily protein DNA/RNA helicase required for DNA uptake
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239525647|gb|EEQ64648.1| superfamily protein DNA/RNA helicase required for DNA uptake
           [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 423

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E I   R  K  VLV   +L  G+ +P C +V ++ A    F  + ++L+Q  GRA R
Sbjct: 334 RAEKITAFRQRKIQVLVTTTILERGVTVPRC-VVGVVAAADRAF--TASALVQIAGRAGR 390

Query: 681 NVNSK---VILYADTITKSIQLA 700
             +S    V+ + D  T ++  A
Sbjct: 391 AADSADDPVVFFTDRYTLALLAA 413


>gi|168056517|ref|XP_001780266.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668320|gb|EDQ54930.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 397

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R
Sbjct: 256 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQKERDAIMAEFR 310

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 311 SGTTRVLITTDVWARGLDVQQVSLVINYDLPN-----NRELYIHRIGRSGR 356


>gi|154298956|ref|XP_001549899.1| p68 RNA helicase [Botryotinia fuckeliana B05.10]
 gi|150857630|gb|EDN32822.1| p68 RNA helicase [Botryotinia fuckeliana B05.10]
          Length = 473

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  ++V  ++  
Sbjct: 310 KILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVAS 369

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+     V   D     +  +    I  IGR  R
Sbjct: 370 RGIDVRNITHVFNYD-----YPNNSEDYIHRIGRTGR 401


>gi|327467201|gb|EGF12705.1| competence protein FA [Streptococcus sanguinis SK330]
          Length = 432

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 6/89 (6%)

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T  R+EI+   R  +  +LV   +L  G+  P    V +L+A+   F  S+++L+Q  GR
Sbjct: 337 TENRLEIVEQFRRKEITILVTTTILERGVTFPGVD-VFVLEANHRLF--SRSALVQISGR 393

Query: 678 AARNVN---SKVILYADTITKSIQLAIDE 703
             R++N    +++ + D  T +++ AI E
Sbjct: 394 VGRSMNRPTGQLLFFHDGTTLAMEKAIRE 422


>gi|319787478|ref|YP_004146953.1| transcription-repair coupling factor [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465990|gb|ADV27722.1| transcription-repair coupling factor [Pseudoxanthomonas suwonensis
           11-1]
          Length = 1166

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM + L E + E  I V +     + LER+ +  D +  +F+VL+   ++  G+DIP   
Sbjct: 843 RMQKQLAELVPEARIGVAHGQMPERELERVML--DFQKQRFNVLLASTIIESGIDIPNAN 900

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  ADK G       L Q  GR  R+
Sbjct: 901 TIVINRADKFGL----AQLHQLRGRVGRS 925


>gi|293364521|ref|ZP_06611246.1| transcription-repair coupling factor [Streptococcus oralis ATCC
           35037]
 gi|291317029|gb|EFE57457.1| transcription-repair coupling factor [Streptococcus oralis ATCC
           35037]
          Length = 1167

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924



 Score = 37.4 bits (85), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 91/197 (46%), Gaps = 15/197 (7%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E  +   +++      A ++ S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKAIAIASSLEK-ENKIVLLTSTYGEAERIISDLLSLLGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   ++  P  +  +  +  I  +++ +R  +  S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDS--PMVEFLMSSQEKIISRVEALRFLSDPS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
             + +  +++ +G+  +Q ELL  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 TRFKESTIKIAVGEEYDQHELLHQLKEIGYRKVTQVRTQGEFSIRGDILDIFEMSQLE-- 189

Query: 347 AWRVSMFGNDIEEISEF 363
            +R+  FG++++ I  F
Sbjct: 190 PFRIEFFGDEVDGIRTF 206


>gi|198476381|ref|XP_001357350.2| GA17489 [Drosophila pseudoobscura pseudoobscura]
 gi|198137669|gb|EAL34419.2| GA17489 [Drosophila pseudoobscura pseudoobscura]
          Length = 578

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 5/99 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TKR A+ L  YL E       +H +    +R + +RD + GK  VL+  ++   G
Sbjct: 410 IVFVETKRGADFLASYLSEAEHPTTSIHGDRLQSQREQALRDFKTGKMKVLIATSVASRG 469

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           LDI     V   D  K     +    +  IGR  R  N+
Sbjct: 470 LDIKNVKHVVNYDMPK-----TIDDYVHRIGRTGRVGNN 503


>gi|170092587|ref|XP_001877515.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647374|gb|EDR11618.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 397

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R   V  MH +++  +R  ++++ R G   VL+  +LL  G+D+ +
Sbjct: 272 TRRKVDWLTEKMHSREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLITTDLLARGIDVQQ 331

Query: 651 CGLV 654
             LV
Sbjct: 332 VSLV 335


>gi|119953366|ref|YP_945575.1| ATP-dependent DNA helicase RecG [Borrelia turicatae 91E135]
 gi|119862137|gb|AAX17905.1| ATP-dependent DNA helicase RecG [Borrelia turicatae 91E135]
          Length = 689

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 22/187 (11%)

Query: 526 IVVSATP--GSWELEQCQGIIVEQIIR-PTGLVDPPVEIRSARTQVED-VYDEINLAAQQ 581
           +++SATP   S  L     + V  I R P G    PV    A+   ED VY+ +N    +
Sbjct: 416 LLMSATPIPRSLALTLFGDLEVSLIKRGPAG--RRPVTTYLAKHGNEDKVYEFLNNELGK 473

Query: 582 GLRI-----LLTVLTKRMAEDLTEY-LYERNIRVRY----MHSEVKTLERIEIIRDLRLG 631
           G ++     L++   K   +D+T   L  +NI V Y    +HS++++  + EI+RD  L 
Sbjct: 474 GHQVYFVYPLISSSEKFNLKDVTSMCLNLKNIFVEYSVAMIHSKLESHVKEEIMRDFYLK 533

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV--NSKVILY 689
           K D+LV  +++  G+D      + +  A++ G     ++L Q  GR  R    +   +LY
Sbjct: 534 KIDILVSTSVIEVGIDCLNATCIVVEHAERFGL----SALHQIRGRVGRGSLKSFLFLLY 589

Query: 690 ADTITKS 696
            + +T++
Sbjct: 590 KEPLTEA 596


>gi|145344838|ref|XP_001416931.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577157|gb|ABO95224.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 474

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   +K  A+ L + L    + +  +H+E+   +R E +   R+G+  VL+  +L+  
Sbjct: 265 VIIFTQSKERAKHLAKELTGDGLHIGLIHAEMSDSKREEQVDRFRMGETWVLIATDLMAR 324

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D    G+  +++ D   F  S TS I  IGR+ R
Sbjct: 325 GMDF--VGVSTVINFD---FPGSPTSYIHRIGRSGR 355


>gi|126696154|ref|YP_001091040.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT
           9301]
 gi|126543197|gb|ABO17439.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT
           9301]
          Length = 818

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 11/117 (9%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRM----AEDLTEYLYER---NIRVRYMHSEVKTLERIE 623
           V DEIN   Q  + + L   +++M    A+   +YL E    N +V  +H ++ + E+ E
Sbjct: 595 VEDEINKGKQAYVILPLIEDSEKMNLSSAKKTFKYLSEEVFFNKKVGLLHGKLSSQEKNE 654

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +I      + ++LV   ++  G+D+P   ++ I ++D+ G     + L Q  GR  R
Sbjct: 655 VINSFLKNEINILVSTTVIEVGIDVPNATIMIIYNSDRFGL----SQLHQLRGRVGR 707


>gi|319900898|ref|YP_004160626.1| primosomal protein N' [Bacteroides helcogenes P 36-108]
 gi|319415929|gb|ADV43040.1| primosomal protein N' [Bacteroides helcogenes P 36-108]
          Length = 820

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           II     GK D+L+G  ++ +GLD     +V IL+AD          + R+   + Q  G
Sbjct: 615 IIAGFERGKTDILIGTQMVSKGLDFDHVSVVGILNADTMLNFPDFRAYERAFQLMAQVAG 674

Query: 677 RAAR-NVNSKVILYADTITKSI 697
           R+ R N   +V+L   +I   I
Sbjct: 675 RSGRKNKRGRVVLQTKSIDHPI 696


>gi|302871262|ref|YP_003839898.1| transcription-repair coupling factor [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574121|gb|ADL41912.1| transcription-repair coupling factor [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 1143

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 127/314 (40%), Gaps = 27/314 (8%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L  G  ++ + L+  L+K  Y+R      +G F   G  ++I+P        RV  FG
Sbjct: 131 IHLTEGLDIQLEILIEKLLKFGYERVKTVEKKGQFSQKGGIVDIYPVA-SRYPVRVEFFG 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           + I+ I  F   T +    ++++KIY    +       +   K +KE+ K   ++L+++G
Sbjct: 190 DTIDTIRFFDVETQKSFERIDSVKIYKAIEW-DLEEDFSEGFKRVKEDYKKMKLKLKEDG 248

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           R    + LE+     +E L+          Y ++ +  +           I ++ L+FVD
Sbjct: 249 R----KNLEESFREVVEELQLNVERLYPYYYQQFFSVVD-----------IFDECLVFVD 293

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           E +     +    +      + L E GF LP   +      E    L  + I+ +     
Sbjct: 294 EYNQVYSSLKASEQEIQEMFSDLLEKGFVLPKMAECYFTMSEVLEKLSSSIILQTFVSVV 353

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
            ELE  + II    +R         EI S   Q E + D++     +G  I +   ++  
Sbjct: 354 KELE-LKDIISFNFLR---------EIPSYNGQKEILIDDLKYYMSKGYTINIFAGSRTS 403

Query: 595 AEDLTEYLYERNIR 608
            EDL + L   +I+
Sbjct: 404 LEDLADALLREDIQ 417


>gi|242086224|ref|XP_002443537.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
 gi|241944230|gb|EES17375.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
          Length = 618

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + + S   Q   V  E+     +G + ++   TKR A+ L+  +  R+ +   +H ++  
Sbjct: 319 LSVSSENRQKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSHSM-SRSFQCEALHGDISQ 377

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            +R   +   R G+F++L+  ++   GLDIP   LV
Sbjct: 378 SQRERTLGGFRDGRFNILIATDVAARGLDIPNVDLV 413


>gi|226198056|ref|ZP_03793628.1| putative ATP-dependent helicase lhr [Burkholderia pseudomallei
           Pakistan 9]
 gi|225929932|gb|EEH25947.1| putative ATP-dependent helicase lhr [Burkholderia pseudomallei
           Pakistan 9]
          Length = 1603

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSE 615
           P+E   A    E +YD I   A      L+ V T+RMAE    +L +R     +   H  
Sbjct: 259 PLEPVMANDVWERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAHHGS 318

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +Q +
Sbjct: 319 LAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFLQRV 373

Query: 676 GRAARNVNS 684
           GR+  ++  
Sbjct: 374 GRSGHHIGG 382


>gi|198274912|ref|ZP_03207444.1| hypothetical protein BACPLE_01071 [Bacteroides plebeius DSM 17135]
 gi|198272359|gb|EDY96628.1| hypothetical protein BACPLE_01071 [Bacteroides plebeius DSM 17135]
          Length = 1039

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 11/107 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           LA +   R L   + K+ A+ +   L +     + + S+    +R ++  DLR G    L
Sbjct: 552 LADEYTCRALCFCVNKKHADFMALQLQKYGFNAKSLTSDTPQPQRKQLAEDLRNGLVHYL 611

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSL---IQTIGRAAR 680
             +++  EG+DIPE   V         FLR   SL   +Q +GR  R
Sbjct: 612 CVVDIFNEGVDIPEVDTVL--------FLRPTDSLTIFLQQLGRGLR 650


>gi|71895253|ref|NP_001025971.1| ATP-dependent RNA helicase DDX3X [Gallus gallus]
 gi|60098425|emb|CAH65043.1| hypothetical protein RCJMB04_2a4 [Gallus gallus]
          Length = 651

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 425 DLLNATGKDSL-TLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 483

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 484 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 542

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 543 ---NITKDL 548


>gi|74693276|sp|Q755W0|FAL1_ASHGO RecName: Full=ATP-dependent RNA helicase FAL1
          Length = 398

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + L+  L + N  V  +H ++K  +R +++ D R
Sbjct: 257 DLYDSLTIT-----QCVIFCNTKKKVDWLSHKLIQNNFAVASIHGDMKQDDRDKVMSDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV  ++ D    L    + I  IGR+ R
Sbjct: 312 SGSSRVLISTDVWARGIDVQQVSLV--INYDLPELLE---NYIHRIGRSGR 357


>gi|320155796|ref|YP_004188175.1| transcription-repair coupling factor [Vibrio vulnificus MO6-24/O]
 gi|319931108|gb|ADV85972.1| transcription-repair coupling factor [Vibrio vulnificus MO6-24/O]
          Length = 1153

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 95/236 (40%), Gaps = 32/236 (13%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+    ++A++        +++ P+   A +L SE + F+  + V  F  +    YD 
Sbjct: 24  LPGASLALSVAELANTHANHTVLIVPDPQTALKLQSEIEQFYTAH-VTIFPDWETLPYDN 82

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P                 +++I   R +    L  + D I +  VS +    S   + 
Sbjct: 83  FSP-----------------HQEIISDRIATLYQLPSQTDGITIVPVSTLLQRQSPRDFL 125

Query: 292 -QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            Q  + + +GD    ++L   L    Y+  D     G +   G  +++FP    D  +R+
Sbjct: 126 LQHTLMVNVGDRYSLEKLRLQLDNSGYRHVDQVFGPGEYASRGSILDLFPMGSRD-PYRI 184

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             F ++I+ I  F P   + I  ++ I++     +    PT   A+    EE ++R
Sbjct: 185 DFFDDEIDTIRTFDPENQRSIEEIQQIRLLPAHEF----PTTEAAI----EEFRIR 232



 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +++AEDLT+ + E   RV   H +++  E   ++ D    +F++LV   ++  G+D+P  
Sbjct: 826 EKVAEDLTKLVPE--ARVTIAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + +  AD  G       L Q  GR  R+
Sbjct: 884 NTIIMDRADNLGL----AQLHQLRGRVGRS 909


>gi|301786799|ref|XP_002928821.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein-like
           [Ailuropoda melanoleuca]
          Length = 2048

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 10/88 (11%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM----HSEVKTL------ERIEIIRDLRLGKF 633
           R+++    +   +++ E L +    +R M    H+  K++      E++E+++  R G +
Sbjct: 480 RVMIFSSFRDSVQEIAEMLLQHQPVIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGY 539

Query: 634 DVLVGINLLREGLDIPECGLVAILDADK 661
           + LV   +  EGLDI E  L+   DA K
Sbjct: 540 NTLVSTCVGEEGLDIGEVDLIICFDAQK 567


>gi|255018993|ref|ZP_05291119.1| primosome assembly protein PriA [Listeria monocytogenes FSL F2-515]
          Length = 198

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     ++++  R  + D+L+G  ++ +GLD P
Sbjct: 74  TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLKSFRNHEADILLGTQMIAKGLDFP 132

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 133 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 171


>gi|228477005|ref|ZP_04061643.1| ATP-dependent RNA helicase [Streptococcus salivarius SK126]
 gi|228251024|gb|EEK10195.1| ATP-dependent RNA helicase [Streptococcus salivarius SK126]
          Length = 447

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   Q    ++ V TK  A+DL  YL    ++V  +H  +   ER  I+  ++   F+ +
Sbjct: 237 LKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLDFEYI 296

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           V  +L   G+DI     V I DA  +      +  +  +GR  RN
Sbjct: 297 VATDLAARGIDIEGVSHV-INDAIPQDL----SFFVHRVGRTGRN 336


>gi|296138846|ref|YP_003646089.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
 gi|296026980|gb|ADG77750.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
           DSM 20162]
          Length = 536

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 38/75 (50%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L AQ     ++   TKR A+ + + L ER  +V  +H ++  + R + +   R G  DVL
Sbjct: 293 LQAQGRGATMIFTRTKRTAQKVADELGERGFKVGAVHGDLGQVAREKALGKFRDGSIDVL 352

Query: 637 VGINLLREGLDIPEC 651
           V  ++   G+DI + 
Sbjct: 353 VATDVAARGIDIDDV 367


>gi|238855798|ref|ZP_04646090.1| DNA or RNA helicase of superfamily II [Lactobacillus jensenii
           269-3]
 gi|260665240|ref|ZP_05866089.1| phage DEAD box family helicase [Lactobacillus jensenii SJ-7A-US]
 gi|282933521|ref|ZP_06338893.1| phage DEAD-box family helicase [Lactobacillus jensenii 208-1]
 gi|313472790|ref|ZP_07813278.1| putative helicase [Lactobacillus jensenii 1153]
 gi|238831574|gb|EEQ23919.1| DNA or RNA helicase of superfamily II [Lactobacillus jensenii
           269-3]
 gi|239529035|gb|EEQ68036.1| putative helicase [Lactobacillus jensenii 1153]
 gi|260560977|gb|EEX26952.1| phage DEAD box family helicase [Lactobacillus jensenii SJ-7A-US]
 gi|281302367|gb|EFA94597.1| phage DEAD-box family helicase [Lactobacillus jensenii 208-1]
          Length = 936

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE--DLTEYLYERNIRVRYMHSEVKTLE 620
           +A  +V+ +  EI+     G  +   V   R AE  +L +   +R  +   + +E    E
Sbjct: 408 TASKRVDYLLKEIDYYGYCGQTVHGLVFCSRQAEAKELAQEFSKRGHQAISLTNENTESE 467

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R + + DL  G+ + ++ ++L  EG+DIP    V +L        +S    IQ +GR  R
Sbjct: 468 RQQAVNDLESGRIEYIITVDLFNEGIDIPCLNQVIMLRNT-----QSSIVFIQQLGRGLR 522

Query: 681 NVNSK 685
               K
Sbjct: 523 KYPGK 527


>gi|168067875|ref|XP_001785829.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662518|gb|EDQ49361.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 538

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 586 LLTVLTKRMA--EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           L  V  +R A  +++T+ L E+ ++   +H      ER   +RD R G  ++LV  ++  
Sbjct: 365 LTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALRDFRKGTTNILVATDVAS 424

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+   G+  +++ D     ++    +  IGR  R
Sbjct: 425 RGLDV--TGVAHVINLD---LPKTMEDYVHRIGRTGR 456


>gi|326381570|ref|ZP_08203264.1| ATP-dependent DNA helicase RecG [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199817|gb|EGD56997.1| ATP-dependent DNA helicase RecG [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 756

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 597 DLTEYLYERNI---RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           DL E L    +   R+  +H  +   E+ +++     G+ DVLV   ++  G+D+P   +
Sbjct: 560 DLAEQLAAGPLAGRRIGILHGRLPADEKNDVMDAFTRGEIDVLVATTVIEVGVDVPNATM 619

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           +AI++A++ G     + L Q  GR  R  ++ + L   T
Sbjct: 620 MAIVNAERFGV----SQLHQLRGRVGRGEHAGLCLLMTT 654


>gi|323453004|gb|EGB08876.1| Apo-Eif4aiii [Aureococcus anophagefferens]
          Length = 395

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + L   + E N  V  MH ++   ER  I+ + R
Sbjct: 254 DLYDTLTIT-----QAVIFCNTKRKVDWLANKMREANFTVSAMHGDMPQRERDAIMAEFR 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 309 GGASRVLIATDIWGRGLDVQQVSLVICYD-----LPNNRELYIHRIGRSGR 354


>gi|322373643|ref|ZP_08048179.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
 gi|321278685|gb|EFX55754.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
          Length = 447

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   Q    ++ V TK  A+DL  YL    ++V  +H  +   ER  I+  ++   F+ +
Sbjct: 237 LKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLDFEYI 296

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           V  +L   G+DI     V I DA  +      +  +  +GR  RN
Sbjct: 297 VATDLAARGIDIEGVSHV-INDAIPQDL----SFFVHRVGRTGRN 336


>gi|315612154|ref|ZP_07887069.1| transcription-repair coupling factor [Streptococcus sanguinis ATCC
           49296]
 gi|315315715|gb|EFU63752.1| transcription-repair coupling factor [Streptococcus sanguinis ATCC
           49296]
          Length = 1167

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924



 Score = 37.7 bits (86), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 91/197 (46%), Gaps = 15/197 (7%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E  +   +++      A ++ S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEK-ENKIVLLTSTYGEAERIISDLLSLLGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   ++  P  +  +  +  I  +++ +R  +  S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDS--PMVEFLMSSQEKIISRVEALRFLSDPS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
             + +  +++ +G+  +Q ELL  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 TRFKESTIKIAVGEEYDQHELLHRLKEIGYRKVTQVQTQGEFSIRGDILDIFEMSQLE-- 189

Query: 347 AWRVSMFGNDIEEISEF 363
            +R+  FG++++ I  F
Sbjct: 190 PFRIEFFGDEVDGIRTF 206


>gi|310829374|ref|YP_003961731.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612]
 gi|308741108|gb|ADO38768.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612]
          Length = 547

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 65/143 (45%), Gaps = 9/143 (6%)

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEIN--LAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           I P  +V P +E +      ++ ++ +   L   +  R L+   TK   +++TE L E  
Sbjct: 205 ISPKTMVAPSIEQKYFNISDQNKFEALTRLLDVYKPQRSLIFCNTKHYVDEITENLQELG 264

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA-DKEGFL 665
             V  +H +++ + R+ +++    G+  +LV  ++   G+D+ +  +V   D  D E + 
Sbjct: 265 YSVDKIHGDMRQVSRLNVLKRFSQGRLKILVATDVAARGIDVDDVDIVFNYDVPDNEEY- 323

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
                 +  IGR  R   S + L
Sbjct: 324 -----YVHRIGRTGRAGKSGLSL 341


>gi|292897893|ref|YP_003537262.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291197741|emb|CBJ44836.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|312170722|emb|CBX78984.1| putative ATP-dependent RNA helicase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 430

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   ED+  +L     RV  +  +V   +R+ I+ D   G  D+LV  ++  
Sbjct: 258 RTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVATDVAA 317

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNS 684
            GL IP    V   D   D+E ++      I   GRA  N +S
Sbjct: 318 RGLHIPAVTHVFNYDLPDDREDYVHR----IGRTGRAGANGHS 356


>gi|293331893|ref|NP_001169380.1| hypothetical protein LOC100383248 [Zea mays]
 gi|224029005|gb|ACN33578.1| unknown [Zea mays]
          Length = 498

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 6/105 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G +IL+   TKRM + L   L  R      +H +    ER +++   R G+  +LV  ++
Sbjct: 395 GSKILIFCTTKRMCDQLARTL-TRQFGASAIHGDKSQSEREKVLNQFRSGRSPILVATDV 453

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              GLDI +  +V   D     F       +  IGR  R   + V
Sbjct: 454 AARGLDIKDIRVVINYD-----FPTGVEDYVHRIGRTGRAGATGV 493


>gi|195579916|ref|XP_002079802.1| GD24145 [Drosophila simulans]
 gi|194191811|gb|EDX05387.1| GD24145 [Drosophila simulans]
          Length = 641

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 34/149 (22%)

Query: 87  SEKQTREISEQTMTPSVQALARLIQSD-NPLLKNGKIWTPHRSWSINNHSKDITFFQMQT 145
           SEK+  E++E+          R+ + D N  +K G+I  P RSW+ +   K+I     + 
Sbjct: 180 SEKENDEMTERDW--------RIFREDYNVTIKGGRIPNPIRSWNESGFPKEIIDIIDKV 231

Query: 146 DY-HPSGDQPAAIAQLLKGIHSREKVQLLLGV--TGSGKTFT--------------MAKV 188
            Y  P+  Q  AI     G+ +R+    ++GV  TGSGKT                + ++
Sbjct: 232 GYKEPTPIQRQAIPI---GLQNRD----IIGVAETGSGKTLAFLIPLLSWIQSLPKIERL 284

Query: 189 IEAMQRP-AIVMAPNKILAAQLYSEFKNF 216
            +  Q P AI+MAP + LA Q+  E   F
Sbjct: 285 EDVDQGPYAIIMAPTRELAQQIEEETTKF 313


>gi|124487920|gb|ABN12043.1| putative eukaryotic translation initiation factor 4A
           [Maconellicoccus hirsutus]
          Length = 372

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++      + ++   T+R  + LT+ + + +  V  MH ++   ER +I++  R
Sbjct: 278 DLYDTLSIT-----QAVIFCNTRRKVDWLTDKMTKNDHTVSSMHGDMDQKEREKIMKHFR 332

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 333 TGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 370


>gi|16768302|gb|AAL28370.1| GM01081p [Drosophila melanogaster]
          Length = 641

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 34/149 (22%)

Query: 87  SEKQTREISEQTMTPSVQALARLIQSD-NPLLKNGKIWTPHRSWSINNHSKDITFFQMQT 145
           SEK+  E++E+          R+ + D N  +K G+I  P RSW+ +   K+I     + 
Sbjct: 180 SEKENDEMTERDW--------RIFREDYNVTIKGGRIPNPIRSWNESGFPKEIIDIIDKV 231

Query: 146 DY-HPSGDQPAAIAQLLKGIHSREKVQLLLGV--TGSGKTFT--------------MAKV 188
            Y  P+  Q  AI     G+ +R+    ++GV  TGSGKT                + ++
Sbjct: 232 GYKEPTPIQRQAIPI---GLQNRD----IIGVAETGSGKTLAFLIPLLSWIQSLPKIERL 284

Query: 189 IEAMQRP-AIVMAPNKILAAQLYSEFKNF 216
            +  Q P AI+MAP + LA Q+  E   F
Sbjct: 285 EDVDQGPYAIIMAPTRELAQQIEEETTKF 313


>gi|254174049|ref|ZP_04880712.1| putative ATP-dependent helicase lhr [Burkholderia mallei ATCC
           10399]
 gi|160695096|gb|EDP85066.1| putative ATP-dependent helicase lhr [Burkholderia mallei ATCC
           10399]
          Length = 1593

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSE 615
           P+E   A    E +YD I   A      L+ V T+RMAE    +L +R     +   H  
Sbjct: 259 PLEPVMANDVWERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAHHGS 318

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +Q +
Sbjct: 319 LAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFLQRV 373

Query: 676 GRAARNVNS 684
           GR+  ++  
Sbjct: 374 GRSGHHIGG 382


>gi|50954992|ref|YP_062280.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951474|gb|AAT89175.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 589

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 8/124 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E L E L  R      +  +V   +R   +  L+ GK D+LV  ++   
Sbjct: 259 MIVFVRTKNETETLAERLRARGYSAAAISGDVAQAQRERTVGQLKSGKLDILVATDVAAR 318

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  +   I +  T  + +  AI+
Sbjct: 319 GLDVDRISHVVNFDIPVDTESYVHR----IGRTGRAGR--SGAAISFVTTRERRLLTAIE 372

Query: 703 ETTR 706
           + TR
Sbjct: 373 KATR 376


>gi|68071941|ref|XP_677884.1| eukaryotic initiation factor [Plasmodium berghei strain ANKA]
 gi|56498165|emb|CAH98223.1| eukaryotic initiation factor, putative [Plasmodium berghei]
          Length = 390

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   + L + + E N  V  MH+ +   ER +I+   R  K+ VL+  ++   GLD+ E
Sbjct: 265 TKLKVDWLAKKMQESNFTVCKMHAGMSQSERDDIMLKFRQCKYRVLISTDIWGRGLDVHE 324

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        S+   I  IGR+ R
Sbjct: 325 VSLVVNYDLPN-----SRECYIHRIGRSGR 349


>gi|328948120|ref|YP_004365457.1| transcription-repair coupling factor [Treponema succinifaciens DSM
            2489]
 gi|328448444|gb|AEB14160.1| transcription-repair coupling factor [Treponema succinifaciens DSM
            2489]
          Length = 1246

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 609  VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            V   H ++ + E  +I R  ++G F +LV   ++  G+DIP    + I  AD  G     
Sbjct: 944  VETAHGKMTSEELDDIFRRFKMGGFHILVATTIIENGIDIPNVNTIIIDRADMYGV---- 999

Query: 669  TSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 1000 SQLYQLRGRVGRS 1012


>gi|198475917|ref|XP_001357204.2| GA21521 [Drosophila pseudoobscura pseudoobscura]
 gi|198137464|gb|EAL34273.2| GA21521 [Drosophila pseudoobscura pseudoobscura]
          Length = 404

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++        ++   T+R  + LT+ +   N  V  MH +++  +R  I++  R
Sbjct: 263 DLYDTLSITQS-----VIFCNTRRKVDQLTQEMSSHNFTVSAMHGDMEQRDREVIMKQFR 317

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 318 SGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 355


>gi|152981028|ref|YP_001352892.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281105|gb|ABR89515.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 466

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR A+ + + L         +H ++    R   +  LR G+  VLV  ++   G+D+P 
Sbjct: 277 TKRDADTIADRLNIAGFAAAALHGDMHQGARNRTLDGLRRGQIRVLVATDVAARGIDVP- 335

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            G+  +++ D   F       I   GRA RN
Sbjct: 336 -GITHVVNYDLPKFPEDYVHRIGRTGRAGRN 365


>gi|113868675|ref|YP_727164.1| ATP-dependent helicase [Ralstonia eutropha H16]
 gi|113527451|emb|CAJ93796.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Ralstonia eutropha H16]
          Length = 520

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 579 AQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           A+QGL  + ++ V +K     L  +L    I    +H +    ER++ +   + G  D L
Sbjct: 283 AEQGLSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKSGTIDAL 342

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   GLDIP+   V   D        S    +  IGR  R
Sbjct: 343 VATDVAARGLDIPDMPCVVNFDVPY-----SAEDYVHRIGRTGR 381


>gi|74006740|ref|XP_861512.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 10 [Canis familiaris]
          Length = 640

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +LV   +   G
Sbjct: 423 LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 482

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           LDI     V   D  +D E ++    +T  +  +G A    N + I     ITK +
Sbjct: 483 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI----NITKDL 534


>gi|15830746|ref|NP_309519.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           Sakai]
 gi|168751336|ref|ZP_02776358.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757829|ref|ZP_02782836.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764889|ref|ZP_02789896.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771340|ref|ZP_02796347.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4486]
 gi|168783484|ref|ZP_02808491.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790092|ref|ZP_02815099.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC869]
 gi|168802501|ref|ZP_02827508.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC508]
 gi|195938873|ref|ZP_03084255.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809609|ref|ZP_03251946.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815000|ref|ZP_03256179.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822485|ref|ZP_03262804.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399391|ref|YP_002269959.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328545|ref|ZP_03444627.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           TW14588]
 gi|254792497|ref|YP_003077334.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226982|ref|ZP_05941263.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256216|ref|ZP_05948749.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282134|ref|YP_003498952.1| transcription-repair coupling factor [Escherichia coli O55:H7 str.
           CB9615]
 gi|13360956|dbj|BAB34915.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           Sakai]
 gi|188014612|gb|EDU52734.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999153|gb|EDU68139.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355265|gb|EDU73684.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359855|gb|EDU78274.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365183|gb|EDU83599.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370352|gb|EDU88768.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC869]
 gi|189375509|gb|EDU93925.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC508]
 gi|208729410|gb|EDZ79011.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731648|gb|EDZ80336.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737970|gb|EDZ85653.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160791|gb|ACI38224.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4115]
 gi|209772998|gb|ACI84811.1| transcription-repair coupling factor [Escherichia coli]
 gi|209773000|gb|ACI84812.1| transcription-repair coupling factor [Escherichia coli]
 gi|209773004|gb|ACI84814.1| transcription-repair coupling factor [Escherichia coli]
 gi|209773006|gb|ACI84815.1| transcription-repair coupling factor [Escherichia coli]
 gi|217318972|gb|EEC27398.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           TW14588]
 gi|254591897|gb|ACT71258.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           TW14359]
 gi|290762007|gb|ADD55968.1| transcription-repair coupling factor [Escherichia coli O55:H7 str.
           CB9615]
 gi|320188121|gb|EFW62786.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC1212]
 gi|320637565|gb|EFX07365.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           G5101]
 gi|320643126|gb|EFX12327.1| transcription-repair coupling factor [Escherichia coli O157:H- str.
           493-89]
 gi|320648584|gb|EFX17239.1| transcription-repair coupling factor [Escherichia coli O157:H- str.
           H 2687]
 gi|320653898|gb|EFX21972.1| transcription-repair coupling factor [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659379|gb|EFX26948.1| transcription-repair coupling factor [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320664514|gb|EFX31665.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326340418|gb|EGD64221.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str.
           1044]
          Length = 1148

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         ++ G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MEKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|322377900|ref|ZP_08052388.1| transcription-repair coupling factor [Streptococcus sp. M334]
 gi|321281076|gb|EFX58088.1| transcription-repair coupling factor [Streptococcus sp. M334]
          Length = 1169

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|307570769|emb|CAR83948.1| bacteriophage helicase [Listeria monocytogenes L99]
          Length = 418

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 7/135 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           ++ +T    +  I   ++  +    ER  II+  R G+  VL  ++L+ EG D+P+C  V
Sbjct: 205 SKKMTMSFEQVGITAAHIDGKTPKAERDHIIQQFRNGEIKVLCNLDLIGEGFDVPDCSTV 264

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
            +L        +S +  IQ   R  R    K  +  D +    +  + +  R+    LE 
Sbjct: 265 IMLRPT-----QSLSLYIQQSMRGMRYRTGKTAIIIDHVGNVNRFGLPDMERKW--SLEA 317

Query: 715 NKKHNINPQSVKEKI 729
            K  N N      KI
Sbjct: 318 KKGSNSNKAEAPVKI 332


>gi|302308377|ref|NP_985263.2| AER408Wp [Ashbya gossypii ATCC 10895]
 gi|299789426|gb|AAS53087.2| AER408Wp [Ashbya gossypii ATCC 10895]
          Length = 398

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + L+  L + N  V  +H ++K  +R +++ D R
Sbjct: 257 DLYDSLTIT-----QCVIFCNTKKKVDWLSHKLIQNNFAVASIHGDMKQDDRDKVMSDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV  ++ D    L    + I  IGR+ R
Sbjct: 312 SGSSRVLISTDVWARGIDVQQVSLV--INYDLPELLE---NYIHRIGRSGR 357


>gi|292486656|ref|YP_003529526.1| putative ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
 gi|291552073|emb|CBA19110.1| putative ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
          Length = 430

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   ED+  +L     RV  +  +V   +R+ I+ D   G  D+LV  ++  
Sbjct: 258 RTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVATDVAA 317

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNS 684
            GL IP    V   D   D+E ++      I   GRA  N +S
Sbjct: 318 RGLHIPAVTHVFNYDLPDDREDYVHR----IGRTGRAGANGHS 356


>gi|293391661|ref|ZP_06635995.1| ATP-dependent DNA helicase RecG [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952195|gb|EFE02314.1| ATP-dependent DNA helicase RecG [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 693

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H  +K  E+  ++   +L + D+LV   ++  G+D+P   L+ I +A++ G  
Sbjct: 517 HLRIGLVHGRMKPNEKQAVMAQFKLVELDLLVATTVIEVGVDVPNASLMIIENAERLGL- 575

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITK 695
              + L Q  GR  R   +   V++Y   + K
Sbjct: 576 ---SQLHQLRGRVGRGSTASFCVLMYKPPLGK 604


>gi|269956105|ref|YP_003325894.1| RecQ family ATP-dependent DNA helicase [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269304786|gb|ACZ30336.1| ATP-dependent DNA helicase, RecQ family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 766

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           LT   AE + E L    + V          +R  +  DL+  +   LV  + L  G D P
Sbjct: 274 LTVSAAEQVAEQLRAAGLAVAAYTGRTDPTQREALEADLKENRVKALVATSALGMGFDKP 333

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G V  L A       S  +  Q +GRA R V+S V++
Sbjct: 334 DLGFVVHLGAPS-----SPIAYYQQVGRAGRGVDSAVVV 367


>gi|269102431|ref|ZP_06155128.1| transcription-repair coupling factor [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162329|gb|EEZ40825.1| transcription-repair coupling factor [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 1153

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 40/216 (18%), Positives = 88/216 (40%), Gaps = 22/216 (10%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           ++G+    ++A++      P + + P+   A +L  E   F  H  V  F  +    YD 
Sbjct: 25  LSGAALALSIAELAANHNGPILAVVPDSQTAVRLQPEISQF-THTDVTIFPDWETLPYDN 83

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P             +  I++++ R+    T    + +  ++V   + +  +   E   
Sbjct: 84  FSPH------------QDIISDRLARLYQLPT----QESGVLLVPISTLLQRLTPREYLH 127

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q  + +K GD +  ++L   L    Y+  D  I  G +   G  ++++P    +  +R+ 
Sbjct: 128 QHALIVKKGDRLSLEKLRLQLEASGYRHVDQVIEHGEYASRGSLLDLYPMG-SNHPYRID 186

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            F ++++ I EF P   +    +E I +     + T
Sbjct: 187 FFDDEVDSIREFDPENQRSTGEIEHINLLPAHEFPT 222


>gi|225022638|ref|ZP_03711830.1| hypothetical protein CORMATOL_02681 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944546|gb|EEG25755.1| hypothetical protein CORMATOL_02681 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 711

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           +N R+  +H ++K  ++   +R    G  D+L+   ++  G+D+P   ++ I +++  G 
Sbjct: 532 KNYRIGLLHGQLKDADKDTTMRQFANGDLDILIATTVIEVGIDVPNATIIMIRESENLGV 591

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADT 692
               + L Q  GR  R     +  +  T
Sbjct: 592 ----SQLHQLRGRVGRGGYDSICFFHHT 615


>gi|168178024|ref|ZP_02612688.1| restriction/helicase domain protein [Clostridium botulinum NCTC
           2916]
 gi|182670498|gb|EDT82472.1| restriction/helicase domain protein [Clostridium botulinum NCTC
           2916]
          Length = 988

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 15/125 (12%)

Query: 564 ARTQVEDVYDEINLAAQQGLRI--LLTVLTKRMAEDLTEYLYERNIRVRYMHSEV----- 616
           A  +V+ + D+IN     G R+  L+    K+ A++L++    +  +   +  E      
Sbjct: 448 AEERVKHIIDKINFYGYCGERVKGLIFCSDKKEAKELSDIFNTKGYKTVALTGESSQEER 507

Query: 617 -KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            K +ER+E  +D  L   D +  +++  EG+DIP    V +L   K     S    +Q +
Sbjct: 508 EKAIERLE--QDETLNSLDYIFTVDIFNEGVDIPSVNQVVMLRPTK-----SSIIFVQQL 560

Query: 676 GRAAR 680
           GR  R
Sbjct: 561 GRGLR 565


>gi|88194528|ref|YP_499323.1| hypothetical protein SAOUHSC_00765 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|284023771|ref|ZP_06378169.1| putative comf operon protein 1 [Staphylococcus aureus subsp. aureus
           132]
 gi|87202086|gb|ABD29896.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|329313471|gb|AEB87884.1| Possible superfamily II DNA/RNA helicase ComFA [Staphylococcus
           aureus subsp. aureus T0131]
          Length = 312

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 602 LYERNI-RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           +Y++ I ++ Y+HSE   + R E +  LR G FDV+    +L  G  +    +V I DA 
Sbjct: 198 VYKQKITKLTYVHSE--DVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVI-DAH 254

Query: 661 KEGFLRSKTSLIQTIGRAARNV---NSKVILYADTITKSIQLAIDETTR 706
           +     ++ +LIQ  GR  R +     KV+ + + ++ ++  A  E  R
Sbjct: 255 Q----YTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMNMIQAKKEIQR 299


>gi|75908979|ref|YP_323275.1| transcription-repair coupling factor [Anabaena variabilis ATCC
           29413]
 gi|75702704|gb|ABA22380.1| transcription-repair coupling factor [Anabaena variabilis ATCC
           29413]
          Length = 1188

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 49/244 (20%), Positives = 99/244 (40%), Gaps = 35/244 (14%)

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYS 291
           QP  +     T   K ++ ++     + S      ++N   VV++V  +   +   +++ 
Sbjct: 114 QPSGFGSSQSTVTAKTATASQSTVNSQQSTVNG--QQNKIAVVATVGALQPHLPPPDAFI 171

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + LK G   + +     +    Y+R  +    G +   GD +++FP   E +  R+ 
Sbjct: 172 PFCLTLKRGLEFDLETFSEKITILGYERVPLVETEGQWSRRGDIVDVFPVSSE-LPVRLE 230

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            FG++IE+I EF P T +   +  T  +   + +    P + TA                
Sbjct: 231 WFGDEIEQIREFDPNTQRSALDKITEIVLTPTSFT---PIITTA---------------- 271

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                     LE+   Y +   ++  +   IE   R+L      E P ++ +Y+PE++L+
Sbjct: 272 ----------LEESAEYQVLSADSEINSALIEGSRRFLG--LAFERPASVLDYLPENTLI 319

Query: 472 FVDE 475
            +DE
Sbjct: 320 TIDE 323


>gi|53716863|ref|YP_105668.1| DEAD-box ATP dependent DNA helicase [Burkholderia mallei ATCC
           23344]
 gi|121596517|ref|YP_989985.1| DEAD-box ATP dependent DNA helicase [Burkholderia mallei SAVP1]
 gi|124382670|ref|YP_001024089.1| DEAD-box ATP dependent DNA helicase [Burkholderia mallei NCTC
           10229]
 gi|126445895|ref|YP_001078517.1| putative ATP-dependent helicase lhr [Burkholderia mallei NCTC
           10247]
 gi|254356727|ref|ZP_04973002.1| putative ATP-dependent helicase lhr [Burkholderia mallei
           2002721280]
 gi|52422833|gb|AAU46403.1| ATP-dependent helicase, DEAD/DEAH family [Burkholderia mallei ATCC
           23344]
 gi|121224315|gb|ABM47846.1| ATP-dependent helicase, DEAD/DEAH family [Burkholderia mallei
           SAVP1]
 gi|124290690|gb|ABM99959.1| ATP-dependent helicase, DEAD/DEAH family [Burkholderia mallei NCTC
           10229]
 gi|126238749|gb|ABO01861.1| putative ATP-dependent helicase lhr [Burkholderia mallei NCTC
           10247]
 gi|148025754|gb|EDK83877.1| putative ATP-dependent helicase lhr [Burkholderia mallei
           2002721280]
          Length = 1598

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSE 615
           P+E   A    E +YD I   A      L+ V T+RMAE    +L +R     +   H  
Sbjct: 259 PLEPVMANDVWERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAHHGS 318

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +Q +
Sbjct: 319 LAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFLQRV 373

Query: 676 GRAARNVNS 684
           GR+  ++  
Sbjct: 374 GRSGHHIGG 382


>gi|315181381|gb|ADT88294.1| ATP-dependent RNA helicase DeaD [Vibrio furnissii NCTC 11218]
          Length = 632

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 309 LDVPR--ITHVFNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQIRMLRTIERVT 364

Query: 706 RR--REKQLEHNKK 717
           R    E QL H  K
Sbjct: 365 RSSMEEIQLPHRDK 378


>gi|307711221|ref|ZP_07647643.1| transcription-repair coupling factor [Streptococcus mitis SK321]
 gi|307617183|gb|EFN96361.1| transcription-repair coupling factor [Streptococcus mitis SK321]
          Length = 1167

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|166714760|gb|ABY88094.1| UvrB [Stenotrophomonas sp. LMG 10877]
          Length = 49

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 30/48 (62%)

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
           I +FP+  +  A R+ +F  ++E+I+ F PLTG+ +RN+    +Y  +
Sbjct: 2   IYVFPAESDSEALRIELFDGEVEKITLFDPLTGETMRNLMRFTVYPKT 49


>gi|305681976|ref|ZP_07404780.1| putative ATP-dependent DNA helicase RecG [Corynebacterium
           matruchotii ATCC 14266]
 gi|305658449|gb|EFM47952.1| putative ATP-dependent DNA helicase RecG [Corynebacterium
           matruchotii ATCC 14266]
          Length = 711

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           +N R+  +H ++K  ++   +R    G  D+L+   ++  G+D+P   ++ I +++  G 
Sbjct: 532 KNYRIGLLHGQLKDADKDTTMRQFANGDLDILIATTVIEVGIDVPNATIIMIRESENLGV 591

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADT 692
               + L Q  GR  R     +  +  T
Sbjct: 592 ----SQLHQLRGRVGRGGYDSICFFHHT 615


>gi|237510504|ref|ZP_04523219.1| putative ATP-dependent helicase lhr [Burkholderia pseudomallei
           MSHR346]
 gi|235002709|gb|EEP52133.1| putative ATP-dependent helicase lhr [Burkholderia pseudomallei
           MSHR346]
          Length = 1598

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSE 615
           P+E   A    E +YD I   A      L+ V T+RMAE    +L +R     +   H  
Sbjct: 259 PLEPVMANDVWERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAHHGS 318

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +Q +
Sbjct: 319 LAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFLQRV 373

Query: 676 GRAARNVNS 684
           GR+  ++  
Sbjct: 374 GRSGHHIGG 382


>gi|195030620|ref|XP_001988166.1| GH11018 [Drosophila grimshawi]
 gi|193904166|gb|EDW03033.1| GH11018 [Drosophila grimshawi]
          Length = 389

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++        ++   T+R  + LT+ +   N  V  MH +++  +R  I++  R
Sbjct: 248 DLYDTLSITQS-----VIFCNTRRKVDQLTQEMSSHNFTVSAMHGDMEQRDREVIMKQFR 302

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 303 SGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 340


>gi|157285013|gb|ABV31246.1| dicer-like 4 [Physcomitrella patens]
          Length = 1445

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++   R G+ +VLV  N+  EGLDI  C LV   D        +  SLIQ+ GR AR + 
Sbjct: 454 VVESFRNGEVNVLVSTNVAEEGLDIQNCHLVIRFD-----LPNTPCSLIQSRGR-ARCLK 507

Query: 684 SKVI 687
           S +I
Sbjct: 508 STII 511


>gi|182420170|ref|ZP_02951401.1| DNA/RNA helicase [Clostridium butyricum 5521]
 gi|237667593|ref|ZP_04527577.1| type III restriction protein, res subunit [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182375972|gb|EDT73562.1| DNA/RNA helicase [Clostridium butyricum 5521]
 gi|237655941|gb|EEP53497.1| type III restriction protein, res subunit [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 833

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 8/108 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK---TLERIEIIRDLRLGKFDVLVGIN 640
           R L    +KR AE + ++  E  +    ++S        ER   I  L  G+  V+  ++
Sbjct: 459 RALGFCTSKRHAEYMAKFFSENGVNSAAVYSGDNGEYAQERNSAINKLTKGELKVVFSVD 518

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +  EGLDIP   +V  L        +S T  +Q +GR  R    K  L
Sbjct: 519 MFNEGLDIPSIDMVMFLRP-----TQSPTVFLQQLGRGLRKFEDKKYL 561


>gi|125718635|ref|YP_001035768.1| superfamily II ATP-dependent DNA/RNA helicase [Streptococcus
           sanguinis SK36]
 gi|125498552|gb|ABN45218.1| Superfamily II ATP-dependent DNA/RNA helicase required for DNA
           uptake (late competence protein), putative
           [Streptococcus sanguinis SK36]
          Length = 432

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 6/89 (6%)

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T  R+EI+   R  +  +LV   +L  G+  P    V +L+A+   F  S+++L+Q  GR
Sbjct: 337 TENRLEIVEQFRRKEITILVTTTILERGVTFPGVD-VFVLEANHRLF--SRSALVQISGR 393

Query: 678 AARNVN---SKVILYADTITKSIQLAIDE 703
             R++N    +++ + D  T +++ AI E
Sbjct: 394 VGRSMNRPTGQLLFFHDGTTLAMEKAIRE 422


>gi|80979131|gb|ABB54768.1| Dicer-2 [Drosophila santomea]
          Length = 1719

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 12/125 (9%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      L++    +QT GRA  N N+
Sbjct: 443 IQQFREGNANLMICSSVLEEGIDVQACNYVLILDP-----LKTFNMYVQTKGRARSN-NA 496

Query: 685 KVILYADTITK---SIQLAIDETTRRR-EKQLEHNKKHNINPQ--SVKEKIMEVIDPILL 738
             +L++  + +   S Q+A   T      + L+        P+   VK+   +VI P + 
Sbjct: 497 NFVLFSSELDRGKISQQIAQYRTAHAEIAEYLKDRVLERTEPEMYXVKQXFQDVIQPFIN 556

Query: 739 EDAAT 743
           E  A 
Sbjct: 557 EHGAV 561


>gi|27365411|ref|NP_760939.1| transcription-repair coupling factor [Vibrio vulnificus CMCP6]
 gi|37680549|ref|NP_935158.1| transcription-repair coupling factor [Vibrio vulnificus YJ016]
 gi|27361558|gb|AAO10466.1| transcription-repair coupling factor [Vibrio vulnificus CMCP6]
 gi|37199297|dbj|BAC95129.1| transcription-repair coupling factor [Vibrio vulnificus YJ016]
          Length = 1153

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 95/236 (40%), Gaps = 32/236 (13%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDY 231
           + G+    ++A++        +++ P+   A +L SE + F+  + V  F  +    YD 
Sbjct: 24  LPGASLALSVAELANTHANHTVLIVPDPQTALKLQSEIEQFYTAH-VTIFPDWETLPYDN 82

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + P                 +++I   R +    L  + D I +  VS +    S   + 
Sbjct: 83  FSP-----------------HQEIISDRIATLYQLPSQTDGITIVPVSTLLQRQSPRDFL 125

Query: 292 -QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            Q  + + +GD    ++L   L    Y+  D     G +   G  +++FP    D  +R+
Sbjct: 126 LQHTLMVNVGDRYSLEKLRLQLDNSGYRHVDQVFGPGEYASRGSILDLFPMGSRD-PYRI 184

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             F ++I+ I  F P   + I  ++ I++     +    PT   A+    EE ++R
Sbjct: 185 DFFDDEIDTIRTFDPENQRSIEEIQQIRLLPAHEF----PTTEAAI----EEFRIR 232



 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +++AEDLT+ + E   RV   H +++  E   ++ D    +F++LV   ++  G+D+P  
Sbjct: 826 EKVAEDLTKLVPE--ARVTIAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTA 883

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + +  AD  G       L Q  GR  R+
Sbjct: 884 NTIIMDRADNLGL----AQLHQLRGRVGRS 909


>gi|323448910|gb|EGB04803.1| hypothetical protein AURANDRAFT_59462 [Aureococcus anophagefferens]
          Length = 469

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 5/99 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L + L         +H +    +R   +R+ + G+  +LVG ++   G
Sbjct: 275 LIFVETKRDADYLEDTLCREGFPASSIHGDKTQRDRELALREFKSGRTPILVGTDVAARG 334

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           LDIP    V   D       R+ +  +  IGR  R  N+
Sbjct: 335 LDIPNVLHVVNFD-----LPRAVSDYVHRIGRTGRAGNT 368


>gi|319956027|ref|YP_004167290.1| transcription-repair coupling factor [Nitratifractor salsuginis DSM
           16511]
 gi|319418431|gb|ADV45541.1| transcription-repair coupling factor [Nitratifractor salsuginis DSM
           16511]
          Length = 998

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           ++L+ G++++ + L   L +  Y   D+    G   V GD I+IF    E   WR+S+F 
Sbjct: 104 LRLEFGETLDLEALKDRLYRWGYHFVDLVSEAGEVSVRGDIIDIFSPGAEH-PWRISLFD 162

Query: 355 NDIEEISEFYPLTGQKIRNVETIK 378
            +IE I  F P T QK R  E ++
Sbjct: 163 EEIESIHPFDPDT-QKRRGDEELE 185


>gi|313884578|ref|ZP_07818339.1| transcription-repair coupling factor [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620362|gb|EFR31790.1| transcription-repair coupling factor [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 1181

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 40/236 (16%), Positives = 100/236 (42%), Gaps = 19/236 (8%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           L+ G+ GS +   +A++ +A     +++  + +   +L  +  +  P   V   ++Y   
Sbjct: 28  LITGLDGSARAIYLAQLFQARPTTILIVESSDLQMQELSQDLAHILPEVPV---LTY--- 81

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESY 290
                  P  D    + +  +      R +A   L +     V+++++ +   +  V+ +
Sbjct: 82  -------PADDNLAIEYAQASMDFASQRVAALNFLAQGQPGFVLTTLAGLRQKLNPVDQW 134

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
                 +++G  ++++ LL +L+   YK  ++ +  G F V G  ++ +P    D   R+
Sbjct: 135 VAYNKIIQVGQELDRQALLDTLIALSYKSVNMVMTPGEFSVRGGIVDFYPLD-SDYPVRL 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             F ++++ I  F   T + +  ++ + +      + P    N     + +ELK R
Sbjct: 194 DFFDSEVDSIRYFNAETQESVEQIDEVILSPVQELIFP----NFMQLMVADELKKR 245



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H ++   E   ++ D   G +DVLV   ++  G+DIP    + +  ADK G    
Sbjct: 861 RVAVAHGQMSETELETVLVDFIQGLYDVLVTTTIIETGVDIPNANTLFVDHADKMGL--- 917

Query: 668 KTSLIQTIGRAAR 680
            ++L Q  GR  R
Sbjct: 918 -STLYQLRGRVGR 929


>gi|295396618|ref|ZP_06806774.1| possible helicase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970549|gb|EFG46468.1| possible helicase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 1061

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 9/100 (9%)

Query: 585 ILLTVLTKRMAEDLTEYLYER---NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +L  V TK  A+++   LY R       + +H  ++  ER   IR +R     V+V +++
Sbjct: 342 LLARVGTKPRADEI-HALYSRLAPEFAPKVIHDSLRASERDAAIRAMRERSSRVIVCVDM 400

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           L EG D+P   + A  D       RS + ++Q IGR AR 
Sbjct: 401 LGEGFDLPTLKVGAFHDTH-----RSLSPMVQLIGRLART 435


>gi|284048361|ref|YP_003398700.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952582|gb|ADB47385.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
          Length = 544

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TK+  ++L   L  R      +H ++   +R  +++  R G+ D+LV  ++  
Sbjct: 257 KMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVATDVAA 316

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            GLDI     V   D   +       S +  IGR  R  N+ V L
Sbjct: 317 RGLDIDNITHVVNFDVPSD-----SESYVHRIGRTGRAGNTGVAL 356


>gi|224042619|ref|XP_002190578.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3
           [Taeniopygia guttata]
          Length = 675

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 449 DLLNATGKDSL-TLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 507

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 508 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 566

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 567 ---NITKDL 572


>gi|195116347|ref|XP_002002717.1| GI17537 [Drosophila mojavensis]
 gi|193913292|gb|EDW12159.1| GI17537 [Drosophila mojavensis]
          Length = 389

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++        ++   T+R  + LT+ +   N  V  MH +++  +R  I++  R
Sbjct: 248 DLYDTLSITQS-----VIFCNTRRKVDQLTQEMTSHNFTVSAMHGDMEQRDREVIMKQFR 302

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 303 SGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 340


>gi|157377633|ref|YP_001476233.1| type III restriction enzyme, res subunit [Shewanella sediminis
           HAW-EB3]
 gi|157320007|gb|ABV39105.1| type III restriction enzyme, res subunit [Shewanella sediminis
           HAW-EB3]
          Length = 1052

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 11/69 (15%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL---IQTIG 676
           ER  + +DL+LG  ++L  +++  EG+DIPE         D   FLR   SL   +Q +G
Sbjct: 594 ERHAVRQDLQLGNINILCVVDIFNEGVDIPEI--------DTLLFLRPTESLTIFLQQLG 645

Query: 677 RAARNVNSK 685
           R  R+ + K
Sbjct: 646 RGLRHNDGK 654


>gi|117620754|ref|YP_854622.1| ATP-dependent RNA helicase RhlB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|189040024|sp|A0KEG9|RHLB_AERHH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|117562161|gb|ABK39109.1| ATP-dependent RNA helicase RhlB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 429

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK + ED+  +L     RV  +  +V   +R++I+ D   G  D+LV  ++   GL IP+
Sbjct: 265 TKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKGTVDILVATDVAARGLHIPD 324

Query: 651 CGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNS 684
              V   D   D E ++      I   GRA ++ +S
Sbjct: 325 VTHVFNYDLPDDAEDYVHR----IGRTGRAGKSGHS 356


>gi|57651588|ref|YP_185687.1| comf operon protein 1, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|87162312|ref|YP_493437.1| putative comf operon protein 1 [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|151220931|ref|YP_001331753.1| hypothetical protein NWMN_0719 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509018|ref|YP_001574677.1| superfamily II DNA/RNA helicase ComFA [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141232|ref|ZP_03565725.1| superfamily II DNA/RNA helicase ComFA [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253731378|ref|ZP_04865543.1| superfamily II DNA/RNA helicase ComFA [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253732802|ref|ZP_04866967.1| superfamily II DNA/RNA helicase ComFA [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|282922047|ref|ZP_06329744.1| II DNA/RNA helicase ComFA [Staphylococcus aureus A9765]
 gi|294850537|ref|ZP_06791265.1| competence protein ComFA [Staphylococcus aureus A9754]
 gi|304381629|ref|ZP_07364279.1| helicase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57285774|gb|AAW37868.1| comf operon protein 1, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|87128286|gb|ABD22800.1| putative comf operon protein 1 [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|150373731|dbj|BAF66991.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160367827|gb|ABX28798.1| possible superfamily II DNA/RNA helicase ComFA [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253724903|gb|EES93632.1| superfamily II DNA/RNA helicase ComFA [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253729167|gb|EES97896.1| superfamily II DNA/RNA helicase ComFA [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|269940327|emb|CBI48704.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
 gi|282593705|gb|EFB98697.1| II DNA/RNA helicase ComFA [Staphylococcus aureus A9765]
 gi|294822616|gb|EFG39057.1| competence protein ComFA [Staphylococcus aureus A9754]
 gi|302750647|gb|ADL64824.1| superfamily II DNA/RNA helicase ComFA [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304339992|gb|EFM05936.1| helicase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315196425|gb|EFU26776.1| possible superfamily II DNA/RNA helicase ComFA [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320139915|gb|EFW31776.1| type III restriction enzyme, res subunit [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|329723819|gb|EGG60347.1| putative ComF operon protein 1 [Staphylococcus aureus subsp. aureus
           21189]
          Length = 360

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 602 LYERNI-RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           +Y++ I ++ Y+HSE   + R E +  LR G FDV+    +L  G  +    +V I DA 
Sbjct: 246 VYKQKITKLTYVHSE--DVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVI-DAH 302

Query: 661 KEGFLRSKTSLIQTIGRAARNV---NSKVILYADTITKSIQLAIDETTR 706
           +     ++ +LIQ  GR  R +     KV+ + + ++ ++  A  E  R
Sbjct: 303 Q----YTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMNMIQAKKEIQR 347


>gi|55821415|ref|YP_139857.1| primosome assembly protein PriA [Streptococcus thermophilus LMG
           18311]
 gi|55737400|gb|AAV61042.1| primosomal replication factor Y [Streptococcus thermophilus LMG
           18311]
          Length = 798

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  GRA R
Sbjct: 599 GKADILLGTQMIAKGLDFPNVTLVGVLNADTSLNLPDFRSAERTFQLLTQVAGRAGR 655



 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 24/145 (16%)

Query: 97  QTMTPSVQALARLIQSDNPLLKN--GKIWTPHRSWS-------INNHSKDIT-------- 139
           +T+  S +A  RL   D  L KN  GK+   H+ +S       I   + DIT        
Sbjct: 189 ETLDISQRAKKRLELRDFLLEKNEPGKLVDLHKLFSRDVVKFFIEAGALDITEVEVNRAD 248

Query: 140 -FFQM--QTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTFTMAKVIE---AM 192
            +F+   +TD+     Q A   +++ G I    K  LL GVTGSGKT     +IE   AM
Sbjct: 249 SYFEKVEKTDFLELNAQQAHAVEVMTGQIGHGGKPFLLEGVTGSGKTEVYLHLIERTLAM 308

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFF 217
            + AIV+ P   L  Q+ + F + F
Sbjct: 309 GKTAIVLVPEISLTPQMTNRFISRF 333


>gi|55823340|ref|YP_141781.1| primosome assembly protein PriA [Streptococcus thermophilus
           CNRZ1066]
 gi|55739325|gb|AAV62966.1| primosomal replication factor Y [Streptococcus thermophilus
           CNRZ1066]
          Length = 798

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  GRA R
Sbjct: 599 GKADILLGTQMIAKGLDFPNVTLVGVLNADTSLNLPDFRSAERTFQLLTQVAGRAGR 655



 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 24/145 (16%)

Query: 97  QTMTPSVQALARLIQSDNPLLKN--GKIWTPHRSWS-------INNHSKDIT-------- 139
           +T+  S +A  RL   D  L KN  GK+   H+ +S       I   + DIT        
Sbjct: 189 ETLDISQRAKKRLELRDFLLEKNEPGKLVDLHKLFSRDVVKFFIEAGALDITEVEVNRAD 248

Query: 140 -FFQM--QTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTFTMAKVIE---AM 192
            +F+   +TD+     Q A   +++ G I    K  LL GVTGSGKT     +IE   AM
Sbjct: 249 NYFEKVEKTDFLELNAQQAHAVEVMTGQIGHGGKPFLLEGVTGSGKTEVYLHLIERTLAM 308

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFF 217
            + AIV+ P   L  Q+ + F + F
Sbjct: 309 GKTAIVLVPEISLTPQMTNRFISRF 333


>gi|78222986|ref|YP_384733.1| ATP-dependent DNA helicase RecG [Geobacter metallireducens GS-15]
 gi|78194241|gb|ABB32008.1| ATP-dependent DNA helicase RecG [Geobacter metallireducens GS-15]
          Length = 767

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 6/99 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           +MAE L   ++   +R+  +H  +K  E+  ++R  +  + D+LV   ++  G+D+P   
Sbjct: 571 QMAEHLANDIFP-ELRLGILHGRMKPEEKEAVMRSFKAREIDILVATTVIEVGIDVPNAT 629

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYA 690
           ++ I  A++ G     + L Q  GR  R    S+ IL A
Sbjct: 630 VMVIEHAERFGL----SQLHQLRGRVGRGSEKSRCILMA 664


>gi|18976964|ref|NP_578321.1| ATP-dependent RNA helicase, putative [Pyrococcus furiosus DSM 3638]
 gi|18892588|gb|AAL80716.1| ATP-dependent RNA helicase, putative [Pyrococcus furiosus DSM 3638]
          Length = 867

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  I RD R G   VL+  N L  G+DI +   V       +G      SLIQ  GRA 
Sbjct: 317 ERFLIERDFREGNLTVLLTTNALELGIDIGDLDAVINYGIPSDGLF----SLIQRFGRAG 372

Query: 680 RNVN----SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           R+ N    + +IL  + +    +   DE     EK L      N++ + + +K
Sbjct: 373 RDPNRIAINGIILRRNGLDYYYKEHFDELVEGIEKGLVEKIPVNLDNEKIAKK 425


>gi|312278743|gb|ADQ63400.1| Replication restart DNA helicase PriA [Streptococcus thermophilus
           ND03]
          Length = 798

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           GK D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  GRA R
Sbjct: 599 GKADILLGTQMIAKGLDFPNVTLVGVLNADTSLNLPDFRSAERTFQLLTQVAGRAGR 655


>gi|309389992|gb|ADO77872.1| transcription-repair coupling factor [Halanaerobium praevalens DSM
           2228]
          Length = 1160

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           + A  L + + E  I V +     K LE+I  + D    KFD+LV   ++  GLDIP   
Sbjct: 844 KTAGKLQKLMPEAKIAVAHGQMNEKRLEKI--MYDFYQQKFDILVCTTIIETGLDIPNVN 901

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAAR 680
            + I  AD+ G     + L Q  GR  R
Sbjct: 902 TIIINHADRMGL----SQLYQLRGRVGR 925


>gi|307705912|ref|ZP_07642750.1| transcription-repair coupling factor [Streptococcus mitis SK597]
 gi|307620573|gb|EFN99671.1| transcription-repair coupling factor [Streptococcus mitis SK597]
          Length = 1168

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 849 IGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 904

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 905 STLYQLRGRVGR---SNRIAYA 923


>gi|307707904|ref|ZP_07644379.1| transcription-repair coupling factor [Streptococcus mitis NCTC
           12261]
 gi|307615969|gb|EFN95167.1| transcription-repair coupling factor [Streptococcus mitis NCTC
           12261]
          Length = 1167

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|307326471|ref|ZP_07605666.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306887879|gb|EFN18870.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 559

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 4/117 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+   + LTE L  R  R   +H  +   +R  ++  +R G  D+LV  ++   GLDI +
Sbjct: 262 TRDQVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRVRGGTADLLVATDVAARGLDIEQ 321

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
             L  +++ D      S    I  +GRA R      I  A+     +  AI+ TTRR
Sbjct: 322 --LTHVVNYDVPSAPESYVHRIGRVGRAGR--EGVAITLAEPREHRMLKAIERTTRR 374


>gi|317049189|ref|YP_004116837.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316950806|gb|ADU70281.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 442

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L  +L+E  IR  Y+  E+   +R E ++ L  G+ +VLV  ++  
Sbjct: 250 RSIVFVRKRERLHELVTWLHEAGIRCSYLEGEMVQAKRNEALKRLNDGRVNVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+DI +   V   D       R+    +  IGR AR     + L
Sbjct: 310 RGIDIEDVSHVFNYD-----MPRTADIYLHRIGRTARAGRKGIAL 349


>gi|255324470|ref|ZP_05365587.1| type III restriction enzyme, res subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|255298376|gb|EET77676.1| type III restriction enzyme, res subunit [Corynebacterium
           tuberculostearicum SK141]
          Length = 1040

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE +        I  R + S++   ER + I+DL  G   VL  +++  EG+DIP    +
Sbjct: 572 AEYMARQFQHFGIPARAVTSDLTATERAQAIKDLENGDVKVLFSVDIFNEGVDIPAVNTL 631

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR 680
            +L   +     S    +Q +GR  R
Sbjct: 632 LLLRPTQ-----SPVVFLQQLGRGLR 652


>gi|225181564|ref|ZP_03735006.1| hypothetical protein DealDRAFT_2595 [Dethiobacter alkaliphilus AHT
           1]
 gi|225167812|gb|EEG76621.1| hypothetical protein DealDRAFT_2595 [Dethiobacter alkaliphilus AHT
           1]
          Length = 181

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 37/70 (52%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           ++  LL+G+  + + QL+ G+  S +T  MA +     RP +++ P++  A ++Y +  +
Sbjct: 14  SLQPLLEGLKVKSRYQLVYGLDESARTMLMAALRLHTDRPVLIVTPDQTHAGRIYEDMLS 73

Query: 216 FFPHNAVEYF 225
            F    V  F
Sbjct: 74  VFKDEDVYLF 83


>gi|168487226|ref|ZP_02711734.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC1087-00]
 gi|183569911|gb|EDT90439.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC1087-00]
          Length = 953

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 129/309 (41%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  +++      A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302



 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|254363222|ref|ZP_04979270.1| ATP-dependent RNA helicase [Mannheimia haemolytica PHL213]
 gi|153095119|gb|EDN75666.1| ATP-dependent RNA helicase [Mannheimia haemolytica PHL213]
          Length = 444

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L+E L +R IR  Y+  E+   +R + I  L+ G  +VLV  ++  
Sbjct: 251 RAIVFVRRREDVRELSETLRKRGIRSTYLEGEMAQTQRNQAINRLKEGVVNVLVATDVAA 310

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D        S  + +  IGR AR
Sbjct: 311 RGIDIDDIDFVLNYD-----LPYSADTYLHRIGRTAR 342


>gi|158312659|ref|YP_001505167.1| transcription-repair coupling factor [Frankia sp. EAN1pec]
 gi|158108064|gb|ABW10261.1| transcription-repair coupling factor [Frankia sp. EAN1pec]
          Length = 1188

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           V L  GD+ + +++ + LV   Y R D+   RG   V G  +++FP   E+   R+  FG
Sbjct: 150 VALAKGDTADLEDVTARLVGIAYHRVDLVERRGEMAVRGGILDVFPP-TEEHPLRIEFFG 208

Query: 355 NDIEEISEF 363
           +++++I  F
Sbjct: 209 DEVDDIRRF 217


>gi|325295454|ref|YP_004281968.1| ATP-dependent DNA helicase RecG [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065902|gb|ADY73909.1| ATP-dependent DNA helicase RecG [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 818

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 10/105 (9%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H ++K  E+ EI+   + G++ VLV   ++  G+D+PE  ++ I  A++ G     
Sbjct: 639 VGLLHGKMKQEEKDEIMEKFKRGEYQVLVSTTVIEVGVDVPEATVMVIEHAERFGL---- 694

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
             L Q  GR  R        Y   ITK    +I E + +R + LE
Sbjct: 695 AQLHQLRGRVGRGNRQS---YCFLITKR---SISEDSIKRLRVLE 733


>gi|302879848|ref|YP_003848412.1| ATP-dependent DNA helicase RecG [Gallionella capsiferriformans
           ES-2]
 gi|302582637|gb|ADL56648.1| ATP-dependent DNA helicase RecG [Gallionella capsiferriformans
           ES-2]
          Length = 685

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 14/126 (11%)

Query: 566 TQVEDVYDEINLAAQQGLRILLT--------VLTKRMAEDLTEYLYER--NIRVRYMHSE 615
           T+ E+V++ +  A   G +            VL  + A++  E L +   ++RV  +H +
Sbjct: 459 TRREEVFERVRAACMTGAQAYWVCPLIDESEVLQLQNAQETFELLTDTFPDLRVGLVHGK 518

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +++ E++  +   + G+  +LV   ++  G+D+P   L+ I  A++ G       L Q  
Sbjct: 519 MESAEKVRTMSAFKAGELQLLVATTVIEVGVDVPNASLMVIDHAERMGL----AQLHQLR 574

Query: 676 GRAARN 681
           GR  R 
Sbjct: 575 GRVGRG 580


>gi|240276504|gb|EER40016.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus H143]
          Length = 426

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  ++V  ++  
Sbjct: 258 KVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVAS 317

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+ +  +  +L+ D   +  +    +  IGR  R
Sbjct: 318 RGIDVRD--ITHVLNYD---YPNNSEDYVHRIGRTGR 349


>gi|229506042|ref|ZP_04395551.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
 gi|229510102|ref|ZP_04399582.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
 gi|229517768|ref|ZP_04407213.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
 gi|229605573|ref|YP_002876277.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
 gi|229345804|gb|EEO10777.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
 gi|229352547|gb|EEO17487.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
 gi|229356393|gb|EEO21311.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
 gi|229372059|gb|ACQ62481.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
          Length = 653

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 259 IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 318

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 319 LDVPR--ITHVYNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQIRMLRTIERVT 374

Query: 706 RR--REKQLEHNKK 717
           R    E QL H  K
Sbjct: 375 RSSMEEIQLPHRDK 388


>gi|209773002|gb|ACI84813.1| transcription-repair coupling factor [Escherichia coli]
 gi|326339337|gb|EGD63151.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str.
           1125]
          Length = 1148

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 120/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         ++ G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MEKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|215254416|gb|ACJ64200.1| vasa [Halocynthia roretzi]
          Length = 691

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TKR A+ L  +L +       +H +    ER + + D + G   +L+  ++  
Sbjct: 494 RTLVFVDTKRNADFLACFLSQEGCPTTSIHGDRLQREREQALYDFKSGVCPILIATSVAA 553

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYAD 691
            GLDIP+   V   D   E         +  IGR  R  N+      Y D
Sbjct: 554 RGLDIPKVEHVINFDLPSE-----IDEYVHRIGRTGRCGNLGQATSFYCD 598


>gi|189082533|sp|Q6CQX2|MPH1_KLULA RecName: Full=ATP-dependent DNA helicase MPH1
          Length = 1002

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           ++I D + G ++VLV  ++  EGLDI E  L+   D+       S    IQ +GR  R  
Sbjct: 572 KVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTS-----SPIKNIQRMGRTGRKR 626

Query: 683 NSK-VILYADTITKSIQLAIDE----TTRRREKQLEHNKKHNINPQSVKEKIME 731
           + + V+L++       + A+++     T      LE+ K   I P +V+ K  E
Sbjct: 627 DGRIVLLFSGNEKFKFEQAMNDYENLQTAITHNALEYTKSDRILPPNVQPKCEE 680


>gi|158333359|ref|YP_001514531.1| DEAD/DEAH box RNA helicase [Acaryochloris marina MBIC11017]
 gi|158303600|gb|ABW25217.1| DEAD/DEAH box RNA helicase [Acaryochloris marina MBIC11017]
          Length = 574

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK MA +L E L  R      +  ++    R + I  ++ G+ D++V  ++   
Sbjct: 249 MLVFVRTKVMAAELAEKLEARGYSSAVLSGDISQPLREKTIERIKAGRLDIIVATDVAAR 308

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  ++  IL+  +  K +  +I+
Sbjct: 309 GLDVERISHVINYDIPYDTETYVHR----IGRTGRAGRQGDA--ILFVSSREKRMLRSIE 362

Query: 703 ETTRR 707
           + TR+
Sbjct: 363 QATRQ 367


>gi|49485622|ref|YP_042843.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297208523|ref|ZP_06924952.1| helicase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300912615|ref|ZP_07130058.1| helicase [Staphylococcus aureus subsp. aureus TCH70]
 gi|49244065|emb|CAG42491.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|296886778|gb|EFH25682.1| helicase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300886861|gb|EFK82063.1| helicase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 360

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 602 LYERNI-RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           +Y++ I ++ Y+HSE   + R E +  LR G FDV+    +L  G  +    +V I DA 
Sbjct: 246 VYKQKITKLTYVHSE--DVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVI-DAH 302

Query: 661 KEGFLRSKTSLIQTIGRAARNV---NSKVILYADTITKSIQLAIDETTR 706
           +     ++ +LIQ  GR  R +     KV+ + + ++ ++  A  E  R
Sbjct: 303 Q----YTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMNMIQAKKEIQR 347


>gi|307176233|gb|EFN65868.1| Fanconi anemia group M protein [Camponotus floridanus]
          Length = 1323

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           K  ++I+ + D R    +VL+  ++  EGLD+ E  L+   D  +   +R    L+Q +G
Sbjct: 436 KQKQQIKALEDFRSNHVNVLISTSIGEEGLDVGEVDLIICFDVSQHSPIR----LVQRMG 491

Query: 677 RAARNVNSKVIL 688
           R  R  +  +I+
Sbjct: 492 RTGRKRDGHIIV 503


>gi|262049534|ref|ZP_06022404.1| hypothetical protein SAD30_0956 [Staphylococcus aureus D30]
 gi|262052325|ref|ZP_06024528.1| hypothetical protein SA930_1051 [Staphylococcus aureus 930918-3]
 gi|259159765|gb|EEW44806.1| hypothetical protein SA930_1051 [Staphylococcus aureus 930918-3]
 gi|259162370|gb|EEW46942.1| hypothetical protein SAD30_0956 [Staphylococcus aureus D30]
          Length = 300

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 602 LYERNI-RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           +Y++ I ++ Y+HSE   + R E +  LR G FDV+    +L  G  +    +V I DA 
Sbjct: 186 VYKQKITKLTYVHSE--DVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVI-DAH 242

Query: 661 KEGFLRSKTSLIQTIGRAARNV---NSKVILYADTITKSIQLAIDETTR 706
           +     ++ +LIQ  GR  R +     KV+ + + ++ ++  A  E  R
Sbjct: 243 Q----YTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMNMIQAKKEIQR 287


>gi|291302062|ref|YP_003513340.1| DEAD/DEAH box helicase domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571282|gb|ADD44247.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis
           DSM 44728]
          Length = 557

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           +V   I  A  +GL I+ +  TKR  + + + L  R   V  +H ++    R   +R  R
Sbjct: 261 EVLARILQAKDRGLTIVFS-RTKRHTQRVADDLEFRGFAVAAVHGDLGQNARERALRAFR 319

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            GK DVLV  ++   GLD+ +   V   D+ ++       + +  IGR  R   + V +
Sbjct: 320 SGKIDVLVATDVAARGLDVRDVTHVINYDSPEDA-----ETYVHRIGRTGRAGATGVAV 373


>gi|281420729|ref|ZP_06251728.1| putative prophage LambdaSa03, helicase [Prevotella copri DSM 18205]
 gi|281405021|gb|EFB35701.1| putative prophage LambdaSa03, helicase [Prevotella copri DSM 18205]
          Length = 553

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G + ++  + ++ A ++ +    + + V  +     T ER + I D   G  +V+V +N
Sbjct: 272 KGKKGIIYAIDRKHASNICDLYATKGVSVCMIDGTTPTAEREQKIADFANGSIEVIVNVN 331

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  EG D P+   + +    K     S +  +Q +GR  R
Sbjct: 332 IFSEGFDCPDIEFIQLARPTK-----SLSLYLQQVGRGLR 366


>gi|254468401|ref|ZP_05081807.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
 gi|207087211|gb|EDZ64494.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
          Length = 444

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 19/134 (14%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           DV +E +L      + ++   TKR A+ L++ LY  N R + +H ++   ER   I   +
Sbjct: 240 DVLNEADLN-----QAIIFTATKREADRLSDELYLMNHRSKTLHGDMSQRERTRTINRFK 294

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
             +  +LV  ++   G+D+ +   V   D       R     I  IGR  R         
Sbjct: 295 NNEIQILVATDVAARGIDVDDITHVINFD-----LPRQVEDYIHRIGRTGR--------- 340

Query: 690 ADTITKSIQLAIDE 703
           A+   K+I L ID+
Sbjct: 341 AERKGKAISLVIDK 354


>gi|194761004|ref|XP_001962722.1| GF15595 [Drosophila ananassae]
 gi|190616419|gb|EDV31943.1| GF15595 [Drosophila ananassae]
          Length = 389

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++        ++   T+R  + LT+ +   N  V  MH +++  +R  I++  R
Sbjct: 248 DLYDTLSITQS-----VIFCNTRRKVDQLTQEMSSHNFTVSAMHGDMEQRDREVIMKQFR 302

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 303 SGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 340


>gi|187920150|ref|YP_001889181.1| DEAD/H associated domain-containing protein [Burkholderia
           phytofirmans PsJN]
 gi|187718588|gb|ACD19811.1| DEAD/H associated domain protein [Burkholderia phytofirmans PsJN]
          Length = 1504

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 9/132 (6%)

Query: 557 PPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYM 612
           PPV + +       E VYD +          L+ V T+RMAE    +L ER  +  V   
Sbjct: 296 PPVPLEAVMPNEAWERVYDRLAELVAMHRTTLIFVNTRRMAERAARHLTERLGKDAVAAH 355

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R +  + L+ G+  VL+    L  G+DI +  LV      + G  R+    +
Sbjct: 356 HGSLAKEHRFDAEQRLKRGELRVLIATASLELGIDIGDVDLVC-----QMGSPRAIAPFL 410

Query: 673 QTIGRAARNVNS 684
           Q +GR+  +V  
Sbjct: 411 QRVGRSGHHVGG 422


>gi|156084736|ref|XP_001609851.1| DEAD box RNA helicase [Babesia bovis T2Bo]
 gi|154797103|gb|EDO06283.1| DEAD box RNA helicase, putative [Babesia bovis]
          Length = 714

 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I++ V  K++A+ +  ++   N+R   +H       R   +   + G FD+LV  +++ 
Sbjct: 568 QIIVFVNMKKVADVVARHISNMNLRAISLHGGKTQDIREGALESFKAGDFDILVATDVVG 627

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            GLD+   G+ A+++ D    + + T  I   GRA 
Sbjct: 628 RGLDVK--GVTAVINFDMPKDIETYTHRIGRTGRAG 661


>gi|329121239|ref|ZP_08249866.1| DNA helicase RecG [Dialister micraerophilus DSM 19965]
 gi|327470173|gb|EGF15636.1| DNA helicase RecG [Dialister micraerophilus DSM 19965]
          Length = 678

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 5/57 (8%)

Query: 171 QLLLGVTGSGKT----FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +LL G  GSGKT     T AK++E   + A +MAP ++LA+Q Y  F N + + +VE
Sbjct: 282 RLLQGDVGSGKTAIAALTAAKIVENGYQ-ATLMAPTEVLASQHYKTFLNLYKNLSVE 337


>gi|323489548|ref|ZP_08094775.1| ATP-dependent DNA helicase RecG [Planococcus donghaensis MPA1U2]
 gi|323396679|gb|EGA89498.1| ATP-dependent DNA helicase RecG [Planococcus donghaensis MPA1U2]
          Length = 682

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 6/103 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + + L  Y  +R   V  MH  +   E+ + +R+   G+ DVLV   ++  G+++P    
Sbjct: 490 LFQQLAIYFKDR-FTVGLMHGRLHPDEKEQTMREFSEGQVDVLVSTTVVEVGVNVPNASF 548

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITK 695
           + I DA++ G     + L Q  GR  R    S  +L AD  T+
Sbjct: 549 MLIYDAERFGL----SQLHQLRGRVGRGSEQSYCVLLADPKTE 587


>gi|313157865|gb|EFR57271.1| DEAD/DEAH box helicase [Alistipes sp. HGB5]
          Length = 502

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 36/64 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           +K   ++L   L    + V  MHS+++  +R E++ D +  K  +LV  +++  G+DI +
Sbjct: 253 SKMKVKELAHTLKRMKLNVAAMHSDLEQAQREEVMLDFKNNKVSILVATDIVARGIDIED 312

Query: 651 CGLV 654
            GLV
Sbjct: 313 IGLV 316


>gi|308499411|ref|XP_003111891.1| hypothetical protein CRE_29486 [Caenorhabditis remanei]
 gi|308268372|gb|EFP12325.1| hypothetical protein CRE_29486 [Caenorhabditis remanei]
          Length = 593

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 18/105 (17%)

Query: 177 TGSGKTFTMA-----KVIEAMQRP---------AIVMAPNKILAAQLYSEFKNFFPHNAV 222
           TGSGKT   A     +++E  QR           IV+ P + LAAQ Y+EF  +      
Sbjct: 191 TGSGKTLAFALPVIEEILELKQRADYSKSSKLLTIVLEPTRELAAQTYTEFVKY----CA 246

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           E  +S  ++   E  +   D  +   + I   +D++  SA R L+
Sbjct: 247 ETSISVANFSGEETDIQHADILVSTPNRIVFHLDKIDTSALRWLI 291



 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 30/168 (17%)

Query: 586 LLTVLTKRMAEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           L+ V +K  A  L + L   + N++V  ++S     ER E +   R G+  VLV   LL 
Sbjct: 394 LVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGKSDKERDETMERFRRGEIWVLVCTELLG 453

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYADTITKSIQ--- 698
            GLD+ + GLV   D        S  S I  +GR  R   S   V  + DT  K I+   
Sbjct: 454 RGLDLSDVGLVINYDLPT-----SIVSYIHRVGRTGRAGKSGHAVTYFTDTDMKYIKSIA 508

Query: 699 --------------LAIDETTRRREKQ-LEHN-KKHNINPQSVKEKIM 730
                         L + + +R R+K+ L+H  K+H I    VKE+++
Sbjct: 509 TVIRQSGFEVPEYLLEMKKVSRDRKKEMLKHAPKRHRI--AMVKEQVI 554


>gi|260770312|ref|ZP_05879245.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
 gi|260615650|gb|EEX40836.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
          Length = 632

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 309 LDVPR--ITHVFNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQIRMLRTIERVT 364

Query: 706 RR--REKQLEHNKK 717
           R    E QL H  K
Sbjct: 365 RSSMEEIQLPHRDK 378


>gi|169836957|ref|ZP_02870145.1| primosome assembly protein PriA [candidate division TM7 single-cell
           isolate TM7a]
          Length = 550

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%)

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS--------LIQTIGR 677
           ++L  GK D+++G  ++ +G+D+P+   V ++ AD    L   TS        L Q IGR
Sbjct: 364 QELYNGKIDIIIGTQVVAKGIDLPKLNTVGVVQADTNLSLPDYTSEERVFQLLLSQVIGR 423

Query: 678 AARNVN-SKVIL 688
             R+ N S+V++
Sbjct: 424 VGRHGNDSEVVI 435


>gi|154496256|ref|ZP_02034952.1| hypothetical protein BACCAP_00541 [Bacteroides capillosus ATCC
           29799]
 gi|150274339|gb|EDN01416.1| hypothetical protein BACCAP_00541 [Bacteroides capillosus ATCC
           29799]
          Length = 694

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A  GL  L  V T   AE L   ++  ++RV ++H ++K  ++  ++     G  DVLV 
Sbjct: 489 AFGGLADLKAVTT--YAETLKTQVFP-DLRVAFVHGKMKPKDKDAVMSAFSAGDIDVLVS 545

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             ++  G+D+P   L+ + +A++ G     + L Q  GR  R 
Sbjct: 546 TTVIEVGVDVPNAALMIVENAERFGL----SQLHQLRGRVGRG 584


>gi|91078472|ref|XP_968116.1| PREDICTED: similar to helicase with zinc finger [Tribolium
           castaneum]
 gi|270003858|gb|EFA00306.1| hypothetical protein TcasGA2_TC003141 [Tribolium castaneum]
          Length = 1419

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 108/251 (43%), Gaps = 31/251 (12%)

Query: 123 WTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182
           W+P R WS               D   +  Q  A+  +   IH +    L++G  G+GKT
Sbjct: 652 WSPSRQWS------------SSLDSRLNLKQKEAVVAITTPIHVKIPPILVIGPFGTGKT 699

Query: 183 FTMAKVIEAM---QRPAIVMAPNKILAAQLY-SEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           FT+A+ ++ +   +   I++  +   AA LY  ++ + +  + +E       YYQ + +V
Sbjct: 700 FTLAQAVKELIKDESNKILLCTHSNSAADLYIKDYLDVWVESGIENARPMRIYYQ-KRWV 758

Query: 239 PRTDTYIEKESSINEQID-RMRHSATRSLLERNDCIVVSSVSCIY--GIG-SVESYSQMI 294
                 ++K  SI    + R     T   LE++  +VV+  + +Y   +G S  S++ ++
Sbjct: 759 ATVSPVVQKYCSIKTTGNSREFQLPTLEELEKHKIVVVTLSTSVYLSAMGLSPGSFTHIL 818

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           +     D   Q     ++       ++  I+     + GD +++ P    + A   ++  
Sbjct: 819 L-----DEAAQALECETITPLALATENTRIV-----LAGDHMQLGPDIFSNFAKERNLHI 868

Query: 355 NDIEEISEFYP 365
           + +E + + YP
Sbjct: 869 SLLERLYDHYP 879


>gi|56479827|ref|NP_707029.2| transcription-repair coupling factor [Shigella flexneri 2a str.
           301]
 gi|56383378|gb|AAN42736.2| transcription-repair coupling factor [Shigella flexneri 2a str.
           301]
          Length = 1148

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 119/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS----ATRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGILIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +   E I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEAEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|332973040|gb|EGK10977.1| primosome assembly protein PriA [Kingella kingae ATCC 23330]
          Length = 720

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R+ E L ++L + NI      S  +  +  ++   +   + DVLVG  +L +G D   
Sbjct: 482 TQRVEETLRQWLPQANIARVDRDSTSRKSDWADLYAQIANQQIDVLVGTQMLAKGHDFAR 541

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAARNVNSKVIL 688
             LV +L+AD   F        R    L+Q  GRA R   +  +L
Sbjct: 542 LNLVLVLNADGSLFSSDFRAPERLFAELMQVSGRAGRAEQAGQVL 586


>gi|332297986|ref|YP_004439908.1| transcription-repair coupling factor [Treponema brennaborense DSM
           12168]
 gi|332181089|gb|AEE16777.1| transcription-repair coupling factor [Treponema brennaborense DSM
           12168]
          Length = 1185

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 30/104 (28%)

Query: 604 ERNIRVRYMHSEVKTLE--RI------------------------EIIRDLRLGKFDVLV 637
           ER  +V Y+H+ V+TLE  RI                        +I R  ++G F VLV
Sbjct: 851 ERGGQVFYLHNRVETLEETRIKLEQLVPEMLVDTAHGQMSAGELDDIFRRFKMGGFHVLV 910

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
              ++  G+DIP    + I  AD  G     + L Q  GR  R+
Sbjct: 911 ATTIIENGIDIPNVNTIIIDRADMYGV----SQLYQLRGRVGRS 950


>gi|282880882|ref|ZP_06289575.1| ATP-dependent DNA helicase RecQ [Prevotella timonensis CRIS 5C-B1]
 gi|281305264|gb|EFA97331.1| ATP-dependent DNA helicase RecQ [Prevotella timonensis CRIS 5C-B1]
          Length = 725

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 85/211 (40%), Gaps = 31/211 (14%)

Query: 490 DFHRKATLAEYGFRLPSCM-----DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544
           +F +   ++ Y      C+     D RP    E+  +RPT   +   P           +
Sbjct: 130 EFFKTVKISFYAIDEAHCISEWGHDFRP----EYRNIRPTINKIGDAPVIALTATATDKV 185

Query: 545 VEQIIRPTGLVDPPVEIRSA----------RTQVEDVYDEINLAAQQ--GLRILLTVLTK 592
              I R  G+ D   E +S+          R +  D+  +I +  +Q  G   ++  L++
Sbjct: 186 RTDIKRSLGIADAR-EFKSSFNRPNLYYEIRQKSSDIDKQIIMFIRQHEGKSGIIYCLSR 244

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           +  E+L+E L   NI+    H+ + ++ R +   D  + + DV+V       G+D P+  
Sbjct: 245 KKVEELSEVLKANNIKAAPYHAGLDSVTRSQTQDDFLMERIDVIVATIAFGMGIDKPDVR 304

Query: 653 LVAILDADK--EGFLRSKTSLIQTIGRAARN 681
            V   D  K  EG+        Q  GRA R+
Sbjct: 305 FVIHYDIPKSLEGYY-------QETGRAGRD 328


>gi|227510455|ref|ZP_03940504.1| DNA helicase RecG [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190107|gb|EEI70174.1| DNA helicase RecG [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 691

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           ++E   +V  +H ++   E+ + +   +  +F VLV   ++  G+D+     + I DAD 
Sbjct: 509 IFEPQFKVGLLHGQMSNQEKDDTMVSFKNNQFQVLVATTVIEVGVDVANANTMLIFDADH 568

Query: 662 EGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691
            G  +    L Q  GR  R +  S  +L AD
Sbjct: 569 FGLAQ----LHQLRGRVGRGSTQSYCVLIAD 595


>gi|298529095|ref|ZP_07016498.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510531|gb|EFI34434.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 367

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 3/99 (3%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q G  ++ T  TK MA  + + L +   R R +   +    R  +++D + G F++LV  
Sbjct: 238 QDGATLVFT-RTKHMATRIAKRLSQAGFRARDLQGNMSQNNRQRVMKDFKRGSFNILVAT 296

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           ++   G+D+   G+  +++ D      S T  I   GRA
Sbjct: 297 DIASRGIDV--AGIGHVVNFDMPDTAESYTHRIGRTGRA 333


>gi|223590207|sp|A5DE68|FAL1_PICGU RecName: Full=ATP-dependent RNA helicase FAL1
 gi|190345565|gb|EDK37471.2| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 397

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD  NL   Q +   +   TK     L   + + N  V  MH ++K  +R  I+++ R
Sbjct: 256 DLYD--NLTITQAV---IFCNTKAKVNWLAGQMRKSNFTVAAMHGDMKQEDRDSIMKEFR 310

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D   DKE +       +  IGR+ R
Sbjct: 311 SGSTRVLISTDVWARGIDVQQVSLVINYDLPLDKENY-------VHRIGRSGR 356


>gi|160892744|ref|ZP_02073534.1| hypothetical protein CLOL250_00275 [Clostridium sp. L2-50]
 gi|156865785|gb|EDO59216.1| hypothetical protein CLOL250_00275 [Clostridium sp. L2-50]
          Length = 676

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 6/104 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           +EDL++ L + +I V Y+H ++   E+  I+ D    K DVLV   ++  G++ P   ++
Sbjct: 492 SEDLSQKL-DSSIHVAYLHGKMTGDEKNRILTDFYEKKVDVLVSTTVIEVGINNPNATVM 550

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSI 697
            + +A++ G      +L Q  GR  R N+ S  I  +    K +
Sbjct: 551 MVENAERFGL----AALHQLRGRVGRGNLQSYCIFISGKKNKEV 590


>gi|157375968|ref|YP_001474568.1| transcription-repair coupling factor [Shewanella sediminis HAW-EB3]
 gi|157318342|gb|ABV37440.1| transcription-repair coupling factor [Shewanella sediminis HAW-EB3]
          Length = 1157

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A +L+E L E   RV   H +++  E  +++ D    KF+VLV   ++  G+D+P  
Sbjct: 831 EKRASELSELLPE--ARVVTAHGQMRERELEKVMSDFYHQKFNVLVCTTIIETGIDVPSA 888

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 889 NTIIIERADKFGL----AQLHQLRGRVGRS 914


>gi|80979125|gb|ABB54765.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 12/125 (9%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      L++    +QT GRA  N N+
Sbjct: 443 IQQFREGNANLMICSSVLEEGIDVQACNYVLILDP-----LKTFNMYVQTKGRARSN-NA 496

Query: 685 KVILYADTITK---SIQLAIDETTRRR-EKQLEHNKKHNINPQ--SVKEKIMEVIDPILL 738
             +L++  + +   S Q+A   T      + L+        P+   VK+   +VI P + 
Sbjct: 497 SFVLFSSELDRGKISQQIAQYRTAHAEIAEYLKDRVLERTEPEMYEVKQHFQDVIQPFIN 556

Query: 739 EDAAT 743
           E  A 
Sbjct: 557 EHGAV 561


>gi|332304825|ref|YP_004432676.1| ATP-dependent DNA helicase RecG [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172154|gb|AEE21408.1| ATP-dependent DNA helicase RecG [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 701

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           ++V  +H  +K  E+  ++   + G+ D+LV   ++  G+D+P   L+ I + ++ G   
Sbjct: 526 LKVGLVHGRLKADEKQRLMEQFKAGEMDLLVATTVIEVGVDVPNASLMIIENPERLGL-- 583

Query: 667 SKTSLIQTIGRAAR-NVNSK-VILYADTITK 695
               L Q  GR  R +V S  V++Y   +TK
Sbjct: 584 --AQLHQLRGRVGRGSVESHCVLMYQSPLTK 612


>gi|312829242|emb|CBX34084.1| type III restriction enzyme, res subunit [Staphylococcus aureus
           subsp. aureus ECT-R 2]
          Length = 360

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 602 LYERNI-RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           +Y++ I ++ Y+HSE   + R E +  LR G FDV+    +L  G  +    +V I DA 
Sbjct: 246 VYKQKITKLTYVHSE--DVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVI-DAH 302

Query: 661 KEGFLRSKTSLIQTIGRAARNVN---SKVILYADTITKSIQLAIDETTR 706
           +     ++ +LIQ  GR  R +     KV+ + + ++ ++  A  E  R
Sbjct: 303 Q----YTQEALIQIAGRVGRKLECPAGKVLFFHEGVSMNMIQAKKEIQR 347


>gi|307190551|gb|EFN74538.1| ATP-dependent RNA helicase DDX42 [Camponotus floridanus]
          Length = 769

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 586 LLTVLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           LL  +TK++ AE+L   L  +   V  +H ++  +ER ++I   +      LV  ++   
Sbjct: 503 LLIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKDVSTLVATDVAAR 562

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           GLDIP    V   D  ++  + + T  I   GRA 
Sbjct: 563 GLDIPHIKTVVNYDVARD--IDTHTHRIGRTGRAG 595


>gi|229491419|ref|ZP_04385243.1| ATP-dependent DNA helicase RecG [Rhodococcus erythropolis SK121]
 gi|229321704|gb|EEN87501.1| ATP-dependent DNA helicase RecG [Rhodococcus erythropolis SK121]
          Length = 753

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++RV  +H  + + E+  ++    +G  DVLV   ++  G+D+P   ++ I+DA++ G  
Sbjct: 569 DLRVGLLHGRLPSDEKDVVMSAFNVGDIDVLVCTTVVEVGVDVPNATVMVIVDAERFGV- 627

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R 
Sbjct: 628 ---SQLHQLRGRVGRG 640


>gi|291296005|ref|YP_003507403.1| transcription factor CarD [Meiothermus ruber DSM 1279]
 gi|290470964|gb|ADD28383.1| transcription factor CarD [Meiothermus ruber DSM 1279]
          Length = 987

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R   +H ++   E  E +     G FDVL+   ++  GLDIPE   + +  ADK G    
Sbjct: 690 RFGVVHGQMPEAEVEETMLAFAEGAFDVLLATTIIESGLDIPEANTILVERADKLGL--- 746

Query: 668 KTSLIQTIGRAAR 680
             +L Q  GR  R
Sbjct: 747 -AALYQLRGRVGR 758


>gi|323340095|ref|ZP_08080360.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
 gi|323092472|gb|EFZ35079.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
          Length = 506

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L++ L  R      +H ++    R+ I++  + G+ D+LV  ++   GLDI  
Sbjct: 257 TKRRVDELSKGLEARGYNAAGIHGDLTQQRRMNILKKFKEGRLDILVATDVAARGLDI-- 314

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 315 SGVTHVYNYD---IPQDPESYVHRIGRTGR 341


>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040622|gb|ACT57418.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 6/75 (8%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT----MAKVIEAMQRPAIVMAP 201
           + P+  Q +AI  +L+ +  + + +++L G  GSGKT      MA  +EA  + A++MAP
Sbjct: 271 FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ-AVIMAP 329

Query: 202 NKILAAQLYSEFKNF 216
             ILA Q Y   K +
Sbjct: 330 IGILAQQHYEFIKKY 344


>gi|195978662|ref|YP_002123906.1| primosome assembly protein PriA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975367|gb|ACG62893.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 794

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           G  DVL+G  ++ +GLD P   LV +L+AD    L       R+   L Q  GRA R
Sbjct: 595 GDADVLLGTQMIAKGLDFPNVTLVGVLNADTSLHLPDFRASERTFQLLTQVAGRAGR 651


>gi|154489097|ref|ZP_02029946.1| hypothetical protein BIFADO_02409 [Bifidobacterium adolescentis
           L2-32]
 gi|154083234|gb|EDN82279.1| hypothetical protein BIFADO_02409 [Bifidobacterium adolescentis
           L2-32]
          Length = 1055

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 9/84 (10%)

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           ER  R + +  E   +ER   +  L  G+ D +  ++L  EG+DIP    + +L      
Sbjct: 518 ERPYRTKAITGENSQMERDTAVAQLENGELDYIFTVDLFNEGVDIPHVNQIVML------ 571

Query: 664 FLRSKTSLI--QTIGRAARNVNSK 685
             ++K+S+I  Q +GR  R  + K
Sbjct: 572 -RQTKSSIIFTQQLGRGLRKASGK 594


>gi|118618015|ref|YP_906347.1| ATP-dependent RNA helicase RhlE [Mycobacterium ulcerans Agy99]
 gi|118570125|gb|ABL04876.1| ATP-dependent RNA helicase RhlE [Mycobacterium ulcerans Agy99]
          Length = 517

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A ++G  ++ T  TKR A+ + + L ER   V  +H ++  + R + ++  R G  +VLV
Sbjct: 266 ARERGATMIFT-RTKRTAQKVADELNERGFAVGAVHGDLGQVAREKALKSFRRGSVNVLV 324

Query: 638 GINLLREGLDI 648
             ++   G+DI
Sbjct: 325 ATDVAARGIDI 335


>gi|21282441|ref|NP_645529.1| hypothetical protein MW0712 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|21203878|dbj|BAB94577.1| MW0712 [Staphylococcus aureus subsp. aureus MW2]
          Length = 312

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 602 LYERNI-RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           +Y++ I ++ Y+HSE   + R E +  LR G FDV+    +L  G  +    +V I DA 
Sbjct: 198 VYKQKITKLTYVHSE--DVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVI-DAH 254

Query: 661 KEGFLRSKTSLIQTIGRAARNV---NSKVILYADTITKSIQLAIDETTR 706
           +     ++ +LIQ  GR  R +     KV+ + + ++ ++  A  E  R
Sbjct: 255 Q----YTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMNMIQAKKEIQR 299


>gi|326942068|gb|AEA17964.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 411

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 66/125 (52%), Gaps = 9/125 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA+ + + L ER ++V  +H ++   +R ++++ +R  +F  +V  +L   G+DI  
Sbjct: 255 TKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI-TKSIQLAIDETTRRRE 709
            G+  +++ +    L      +  +GR AR  +S +   A TI   + + A+D   ++R 
Sbjct: 314 -GISHVINYELPSDL---DFFVHRVGRTARAGHSGI---AVTIYDPANEEALDSLEKQRH 366

Query: 710 KQLEH 714
            + +H
Sbjct: 367 IEFKH 371


>gi|325093268|gb|EGC46578.1| GPI inositol-deacylase [Ajellomyces capsulatus H88]
          Length = 1690

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 71/183 (38%), Gaps = 17/183 (9%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLVA 655
           LTE      +  RY+ S+     R + +   R  ++ VLV   L  EG DIP  +C L+A
Sbjct: 310 LTEAFRRFGVDARYITSQTPKDIRTDELEAFRNQEYPVLVNCGLFTEGTDIPNIDCVLLA 369

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR----RREKQ 711
                     RSK  LIQ IGR  R    K   +   +  S+   I  T        ++ 
Sbjct: 370 RPT-------RSKNLLIQMIGRGLRLYPGKKNCHIIDMVASLGTGITSTPTLFGLHPDEG 422

Query: 712 LEHNKKHNI----NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSL 767
           L+  K  +I    N +S   K       I  +  A      D+    L    G+ H++SL
Sbjct: 423 LDEAKMEDIEKLKNRESYSFKSKSKFSAISADKVAVDFTDYDSVHDLLRDTSGERHIRSL 482

Query: 768 RKQ 770
            + 
Sbjct: 483 SQN 485


>gi|227513464|ref|ZP_03943513.1| DNA helicase RecG [Lactobacillus buchneri ATCC 11577]
 gi|227524607|ref|ZP_03954656.1| DNA helicase RecG [Lactobacillus hilgardii ATCC 8290]
 gi|227083337|gb|EEI18649.1| DNA helicase RecG [Lactobacillus buchneri ATCC 11577]
 gi|227088282|gb|EEI23594.1| DNA helicase RecG [Lactobacillus hilgardii ATCC 8290]
          Length = 727

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           ++E   +V  +H ++   E+ + +   +  +F VLV   ++  G+D+     + I DAD 
Sbjct: 545 IFEPQFKVGLLHGQMSNQEKDDTMVSFKNNQFQVLVATTVIEVGVDVANANTMLIFDADH 604

Query: 662 EGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691
            G       L Q  GR  R +  S  +L AD
Sbjct: 605 FGL----AQLHQLRGRVGRGSTQSYCVLIAD 631


>gi|225873674|ref|YP_002755133.1| transcription-repair coupling factor [Acidobacterium capsulatum
           ATCC 51196]
 gi|225794589|gb|ACO34679.1| transcription-repair coupling factor [Acidobacterium capsulatum
           ATCC 51196]
          Length = 1189

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 121 KIWTPHRSWSINNHSKDITF---FQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGV 176
           K++   ++   + +S D  F   F+   DY+ + DQ +AIA + + + S   + +LL G 
Sbjct: 609 KLYAQRKAAQGHAYSADNEFQREFEDSFDYNETDDQLSAIADIKRDMESTTPMDRLLCGD 668

Query: 177 TGSGKT-FTMAKVIEAMQ--RPAIVMAPNKILAAQLYSEFKNFF 217
            G GKT   M    +A+Q  +   V+ P  +L+ Q Y  FK  F
Sbjct: 669 VGYGKTEVAMRAAFKAVQDGKQVAVLTPTTVLSFQHYETFKKRF 712


>gi|302310612|ref|XP_453667.2| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|199425049|emb|CAH00763.2| KLLA0D13552p [Kluyveromyces lactis]
          Length = 1008

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           ++I D + G ++VLV  ++  EGLDI E  L+   D+       S    IQ +GR  R  
Sbjct: 578 KVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDSTS-----SPIKNIQRMGRTGRKR 632

Query: 683 NSK-VILYADTITKSIQLAIDE----TTRRREKQLEHNKKHNINPQSVKEKIME 731
           + + V+L++       + A+++     T      LE+ K   I P +V+ K  E
Sbjct: 633 DGRIVLLFSGNEKFKFEQAMNDYENLQTAITHNALEYTKSDRILPPNVQPKCEE 686


>gi|121533704|ref|ZP_01665531.1| primosomal protein N' [Thermosinus carboxydivorans Nor1]
 gi|121307695|gb|EAX48610.1| primosomal protein N' [Thermosinus carboxydivorans Nor1]
          Length = 811

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLL-GVTGSGKTFTMAKVIEAMQ---RPAIVMAPNKIL 205
           + +Q  A+ Q+L  I SRE    L+ GVTGSGKT    +   A +   R  IVM P   L
Sbjct: 280 TNEQRQAVTQILAAIASREHKSFLIHGVTGSGKTQVYIEAAAAARQQGRQVIVMVPEIAL 339

Query: 206 AAQLYSEFKNFFPHNAV 222
             Q  S F   F  + V
Sbjct: 340 TGQTVSRFNERFGEDVV 356


>gi|80979123|gb|ABB54764.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 12/125 (9%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      L++    +QT GRA  N N+
Sbjct: 443 IQQFREGNANLMICSSVLEEGIDVQACNYVLILDP-----LKTFNMYVQTKGRARSN-NA 496

Query: 685 KVILYADTITK---SIQLAIDETTRRR-EKQLEHNKKHNINPQ--SVKEKIMEVIDPILL 738
             +L++  + +   S Q+A   T      + L+        P+   VK+   +VI P + 
Sbjct: 497 SFVLFSSELDRGKISQQIAQYRTAHAEIAEYLKDRVLERTEPEMYEVKQHFQDVIQPFIN 556

Query: 739 EDAAT 743
           E  A 
Sbjct: 557 EHGAV 561


>gi|80979119|gb|ABB54762.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 12/125 (9%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      L++    +QT GRA  N N+
Sbjct: 443 IQQFREGNANLMICSSVLEEGIDVQACNYVLILDP-----LKTFNMYVQTKGRARSN-NA 496

Query: 685 KVILYADTITK---SIQLAIDETTRRR-EKQLEHNKKHNINPQ--SVKEKIMEVIDPILL 738
             +L++  + +   S Q+A   T      + L+        P+   VK+   +VI P + 
Sbjct: 497 SFVLFSSELDRGKISQQIAQYRTAHAEIAEYLKDRVLERTEPEMYEVKQHFQDVIQPFIN 556

Query: 739 EDAAT 743
           E  A 
Sbjct: 557 EHGAV 561


>gi|315453841|ref|YP_004074111.1| ATP-dependent DNA helicase [Helicobacter felis ATCC 49179]
 gi|315132893|emb|CBY83521.1| ATP-dependent DNA helicase [Helicobacter felis ATCC 49179]
          Length = 624

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 2/102 (1%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVT 177
           + K W     ++ + + +++  F     +  + DQ  AI  +   +  +   + L++G  
Sbjct: 214 SAKKWEFPSKFARHANLENLQIFLKNLPFTLTSDQQRAITSIQADMQGQVAAKRLIMGDV 273

Query: 178 GSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           G GKT   +A V       +++MAP  +LA QLY E   F P
Sbjct: 274 GCGKTMVILASVALTFPHKSLLMAPTSVLAKQLYQEALKFLP 315


>gi|251792001|ref|YP_003006721.1| transcription-repair coupling factor [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533388|gb|ACS96634.1| transcription-repair coupling factor [Aggregatibacter aphrophilus
           NJ8700]
          Length = 1151

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 102/244 (41%), Gaps = 23/244 (9%)

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM-IV 295
           + P  +T      S ++ I   R SA   L +R   I +  ++ +       SY Q  ++
Sbjct: 70  FFPDWETLPYDSFSPHQDIISARLSALFHLQQRKQGIFILPIATLMQRVCPPSYLQHRVL 129

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +  GD    + L   L K  Y+  +  +  G + V G  +++FP     V +R+  F +
Sbjct: 130 LINKGDRFVIETLRLQLEKSGYRAVEQVLEHGEYAVRGALLDLFPMG-SAVPFRLDFFDD 188

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F   T + ++ ++ I +     +    PT N  +++ + + +    E+ ++  
Sbjct: 189 EIDSIRTFDVDTQRTLQEIDQINLLPAHEF----PTDNQGIEFFRSQFRAAFGEIRRD-- 242

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
               + + Q+I+         G+  +   Y + L      E   TLF+Y P ++L    E
Sbjct: 243 ---PEHIYQQIS--------KGTLAAGIEYWQPLFF----EEMATLFDYFPANTLFITGE 287

Query: 476 SHVT 479
            + T
Sbjct: 288 QNQT 291


>gi|229526685|ref|ZP_04416089.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426]
 gi|229336843|gb|EEO01861.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426]
          Length = 651

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 259 IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 318

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 319 LDVPR--ITHVYNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQIRMLRTIERVT 374

Query: 706 RR--REKQLEHNKK 717
           R    E QL H  K
Sbjct: 375 RSSMEEIQLPHRDK 388


>gi|229514239|ref|ZP_04403700.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21]
 gi|229522353|ref|ZP_04411769.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80]
 gi|229528334|ref|ZP_04417725.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)]
 gi|229334696|gb|EEO00182.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)]
 gi|229340338|gb|EEO05344.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80]
 gi|229348219|gb|EEO13177.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21]
          Length = 653

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 259 IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 318

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 319 LDVPR--ITHVYNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQIRMLRTIERVT 374

Query: 706 RR--REKQLEHNKK 717
           R    E QL H  K
Sbjct: 375 RSSMEEIQLPHRDK 388


>gi|225871066|ref|YP_002747013.1| primosomal protein N' [Streptococcus equi subsp. equi 4047]
 gi|225700470|emb|CAW94892.1| putative primosomal protein N' [Streptococcus equi subsp. equi
           4047]
          Length = 794

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           G  DVL+G  ++ +GLD P   LV +L+AD    L       R+   L Q  GRA R
Sbjct: 595 GDADVLLGTQMIAKGLDFPNVTLVGVLNADTSLHLPDFRASERTFQLLTQVAGRAGR 651


>gi|239827745|ref|YP_002950369.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
 gi|239808038|gb|ACS25103.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
          Length = 435

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA+++ + L E+ ++V  +H ++   ER +++R +R  +F  +V  +L   G+DI  
Sbjct: 255 TKKMADEVADRLIEKGMKVGILHGDLTPRERKKMMRQIRDLEFQYIVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  +++ +     +     I  +GR AR
Sbjct: 314 -GVSHVINYE---LPKDLQFYIHRVGRTAR 339


>gi|157693948|ref|YP_001488410.1| competence protein FA [Bacillus pumilus SAFR-032]
 gi|157682706|gb|ABV63850.1| competence protein FA [Bacillus pumilus SAFR-032]
          Length = 459

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 8/120 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+LL V +    + +T+ L + ++ V  + ++    +R + ++  R  K+DVLV   +L 
Sbjct: 327 RVLLFVPSISTMKKVTKVLRKHHLNVEGVSAD--DPDRKQKVQQFRDDKYDVLVTTTILE 384

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN---VNSKVILYADTITKSIQLA 700
            G+ IP    V +L A+   F  ++++L+Q  GRA R+       V  +   +T+S++ A
Sbjct: 385 RGVTIPNVQ-VGVLGAESTIF--TESALVQISGRAGRHPDFFKGDVFFFHFGLTRSMKQA 441


>gi|80979129|gb|ABB54767.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 12/125 (9%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      L++    +QT GRA  N N+
Sbjct: 443 IQQFREGNANLMICSSVLEEGIDVQACNYVLILDP-----LKTFNMYVQTKGRARSN-NA 496

Query: 685 KVILYADTITK---SIQLAIDETTRRR-EKQLEHNKKHNINPQ--SVKEKIMEVIDPILL 738
             +L++  + +   S Q+A   T      + L+        P+   VK+   +VI P + 
Sbjct: 497 SFVLFSSELDRGKISQQIAQYRTAHAEIAEYLKDRVLERTEPEMYEVKQHFQDVIQPFIN 556

Query: 739 EDAAT 743
           E  A 
Sbjct: 557 EHGAV 561


>gi|80979121|gb|ABB54763.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 12/125 (9%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      L++    +QT GRA  N N+
Sbjct: 443 IQQFREGNANLMICSSVLEEGIDVQACNYVLILDP-----LKTFNMYVQTKGRARSN-NA 496

Query: 685 KVILYADTITK---SIQLAIDETTRRR-EKQLEHNKKHNINPQ--SVKEKIMEVIDPILL 738
             +L++  + +   S Q+A   T      + L+        P+   VK+   +VI P + 
Sbjct: 497 SFVLFSSELDRGKISQQIAQYRTAHAEIAEYLKDRVLERTEPEMYEVKQHFQDVIQPFIN 556

Query: 739 EDAAT 743
           E  A 
Sbjct: 557 EHGAV 561


>gi|80979127|gb|ABB54766.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 12/125 (9%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      L++    +QT GRA  N N+
Sbjct: 443 IQQFREGNANLMICSSVLEEGIDVQACNYVLILDP-----LKTFNMYVQTKGRARSN-NA 496

Query: 685 KVILYADTITK---SIQLAIDETTRRR-EKQLEHNKKHNINPQ--SVKEKIMEVIDPILL 738
             +L++  + +   S Q+A   T      + L+        P+   VK+   +VI P + 
Sbjct: 497 SFVLFSSELDRGKISQQIAQYRTAHAEIAEYLKDRVLERTEPEMYEVKQHFQDVIQPFIN 556

Query: 739 EDAAT 743
           E  A 
Sbjct: 557 EHGAV 561


>gi|78044731|ref|YP_359139.1| excinuclease ABC subunit C [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|90111061|sp|Q3AFE5|UVRC_CARHZ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|77996846|gb|ABB15745.1| excinuclease ABC, C subunit [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 607

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 26/32 (81%)

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           +G+  +K L+K+M +A+DNL FE AA++RD+I
Sbjct: 198 RGENLIKKLKKEMAIASDNLEFERAAKLRDQI 229


>gi|85711466|ref|ZP_01042524.1| putative ATP-dependent helicase [Idiomarina baltica OS145]
 gi|85694618|gb|EAQ32558.1| putative ATP-dependent helicase [Idiomarina baltica OS145]
          Length = 1047

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L   ++ + A+ +T Y  ++ ++ + +  E    +R +I R+L     +++V ++L  
Sbjct: 568 RALAFCVSVQHAQFMTHYFCDKGVKAKLLTGETPQSQREQIKRELEQRDINIIVTVDLFN 627

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           EG+D+P    + +L   +     S +   Q IGR  R    K
Sbjct: 628 EGVDLPYVDTLLLLRPTQ-----SVSLFQQQIGRGLRLFEGK 664


>gi|327394851|dbj|BAK12273.1| ATP-dependent RNA helicase SrmB [Pantoea ananatis AJ13355]
          Length = 442

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L  +L++  IR  Y+  E+   +R E I+ L  G+ +VLV  ++  
Sbjct: 250 RSIVFVRKRERLHELVSWLHDAGIRTSYLEGEMVQAKRNEAIKRLVEGRVNVLVATDIAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+ +   V   D       R+  + +  IGR  R
Sbjct: 310 RGIDVDDVSHVINFD-----MPRTADTYLHRIGRTGR 341


>gi|310831360|ref|YP_003970003.1| putative superfamily II helicase/eIF-4AIII [Cafeteria roenbergensis
           virus BV-PW1]
 gi|309386544|gb|ADO67404.1| putative superfamily II helicase/eIF-4AIII [Cafeteria roenbergensis
           virus BV-PW1]
          Length = 384

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +H  ++  ER +I+ + R GK  +L+  +LL  G+DIPE  LV   D  K     +  + 
Sbjct: 276 IHGGLEQEERSKIVDEFREGKTRILLTTDLLARGIDIPEVKLVINYDLPK-----NHETF 330

Query: 672 IQTIGRAAR 680
           I  IGR+ R
Sbjct: 331 IHRIGRSGR 339


>gi|304385542|ref|ZP_07367886.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
           acidilactici DSM 20284]
 gi|304328046|gb|EFL95268.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
           acidilactici DSM 20284]
          Length = 511

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++ + L  R      +H ++    R+ I+   R G+ D+LV  ++   GLDI  
Sbjct: 248 TKRRVDEVAKGLVARGYNAAGIHGDLTQQRRMNILHQFRDGQLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|226305911|ref|YP_002765871.1| ATP-dependent DNA helicase RecG [Rhodococcus erythropolis PR4]
 gi|226185028|dbj|BAH33132.1| ATP-dependent DNA helicase RecG [Rhodococcus erythropolis PR4]
          Length = 758

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++RV  +H  + + E+  ++    +G  DVLV   ++  G+D+P   ++ I+DA++ G  
Sbjct: 574 DLRVGLLHGRLPSDEKDVVMSAFNVGDIDVLVCTTVVEVGVDVPNATVMVIVDAERFGV- 632

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R 
Sbjct: 633 ---SQLHQLRGRVGRG 645


>gi|169869158|ref|XP_001841147.1| ATP-dependent RNA helicase eIF4A [Coprinopsis cinerea okayama7#130]
 gi|116497789|gb|EAU80684.1| ATP-dependent RNA helicase eIF4A [Coprinopsis cinerea okayama7#130]
          Length = 397

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R   V  MH +++  +R  ++++ R G   VL+  +LL  G+D+ +
Sbjct: 272 TRRKVDWLTEKMHAREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLITTDLLARGIDVQQ 331

Query: 651 CGLV 654
             LV
Sbjct: 332 VSLV 335


>gi|15601559|ref|NP_233190.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121588090|ref|ZP_01677839.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
 gi|121730005|ref|ZP_01682420.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
 gi|153819412|ref|ZP_01972079.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
 gi|153823796|ref|ZP_01976463.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
 gi|227812370|ref|YP_002812380.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
 gi|254849961|ref|ZP_05239311.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
 gi|298499594|ref|ZP_07009400.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
 gi|9658230|gb|AAF96702.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547686|gb|EAX57782.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
 gi|121628252|gb|EAX60768.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
 gi|126510058|gb|EAZ72652.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
 gi|126518684|gb|EAZ75907.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
 gi|227011512|gb|ACP07723.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
 gi|254845666|gb|EET24080.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
 gi|297541575|gb|EFH77626.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
          Length = 663

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 269 IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 328

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 329 LDVPR--ITHVYNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQIRMLRTIERVT 384

Query: 706 RR--REKQLEHNKK 717
           R    E QL H  K
Sbjct: 385 RSSMEEIQLPHRDK 398


>gi|328952384|ref|YP_004369718.1| primosomal protein N' [Desulfobacca acetoxidans DSM 11109]
 gi|328452708|gb|AEB08537.1| primosomal protein N' [Desulfobacca acetoxidans DSM 11109]
          Length = 749

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 17/98 (17%)

Query: 600 EYLYERNIRVRYMHSEVKTLER---------IEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           E+L ER +R  +  + +  L+R         I+I+ +++  + D+L+G  ++ +G D P+
Sbjct: 506 EFL-EREVRRLFPEARIARLDRDTASHRGKAIQILEEMKTHRLDILIGTQMITKGHDFPQ 564

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
             LV  + AD   +        R+   L Q  GRA R 
Sbjct: 565 VTLVGAVAADLSLYFPEYHAGERTFQLLTQVAGRAGRG 602


>gi|313764129|gb|EFS35493.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
 gi|314929970|gb|EFS93801.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
 gi|314972830|gb|EFT16927.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
 gi|328753876|gb|EGF67492.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
          Length = 560

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 64/126 (50%), Gaps = 8/126 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G+  +LV  ++  
Sbjct: 301 KVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVAA 360

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVILYADT-----ITKSI 697
            G+D+   G+  +++ +     ++    I   GRA A+ +   ++ +AD      I K++
Sbjct: 361 RGIDV--TGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADVTRWKLINKAL 418

Query: 698 QLAIDE 703
            L + E
Sbjct: 419 TLELSE 424


>gi|302697553|ref|XP_003038455.1| hypothetical protein SCHCODRAFT_34853 [Schizophyllum commune H4-8]
 gi|300112152|gb|EFJ03553.1| hypothetical protein SCHCODRAFT_34853 [Schizophyllum commune H4-8]
          Length = 533

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 16/128 (12%)

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL-YERN-IRVRYMHSE------ 615
           A  +  DV +E + AA+   R+++ V  +   E++ + L +ER  IR      +      
Sbjct: 355 AENEGRDVENEAHNAAKIESRVMVFVTFREAVEEIVDALNFERPLIRATKFVGQGLDKKG 414

Query: 616 ---VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
              +   E++  +   + G+++VLV  ++  EGLDI E  L+   DA K     +   ++
Sbjct: 415 GKGLAQKEQLATVEKFKAGEYNVLVATSIGEEGLDIGEVDLIVCYDAQK-----TPIRML 469

Query: 673 QTIGRAAR 680
           Q +GR  R
Sbjct: 470 QRLGRTGR 477


>gi|170756392|ref|YP_001780288.1| DNA repair helicase Rad25 [Clostridium botulinum B1 str. Okra]
 gi|169121604|gb|ACA45440.1| restriction/helicase domain protein [Clostridium botulinum B1 str.
           Okra]
          Length = 1002

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 15/125 (12%)

Query: 564 ARTQVEDVYDEINLAAQQGLRI--LLTVLTKRMAEDLTEYLYERNIRVRYMHSEV----- 616
           A  +V+ + D+IN     G R+  L+    K+ A++L++    +  +   +  E      
Sbjct: 462 AEERVKHIIDKINFYGYCGERVKGLIFCSDKKEAKELSDIFNTKGYKTVGLTGESSQEER 521

Query: 617 -KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            K +ER+E  +D  L   D +  +++  EG+DIP    V +L   K   +      +Q +
Sbjct: 522 EKAIERLE--QDETLNSLDYIFTVDIFNEGVDIPSVNQVVMLRPTKSSII-----FVQQL 574

Query: 676 GRAAR 680
           GR  R
Sbjct: 575 GRGLR 579


>gi|308807965|ref|XP_003081293.1| DNA helicase RecG (ISS) [Ostreococcus tauri]
 gi|116059755|emb|CAL55462.1| DNA helicase RecG (ISS) [Ostreococcus tauri]
          Length = 1259

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 13/122 (10%)

Query: 569  EDVYDEINLAAQQGL--RILLTVLTKRMAE-DLTEYLYER------NIRVRYMHSEVKTL 619
            E + DE+   AQ  +  R++    + RM+E    E  Y R      N+R   +H ++   
Sbjct: 1013 EAMRDEVRQGAQAYIIVRLVQESGSSRMSEVKGAEEEYARLVSKYPNVRFGLLHGQLGAE 1072

Query: 620  ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            E+   +     G+   LV  +++  G+D+P   ++ I DAD  G      +L Q  GR  
Sbjct: 1073 EKAAALEKFSAGETQALVATSVVEVGVDVPNASIIIIEDADGFGL----AALHQLRGRVG 1128

Query: 680  RN 681
            R 
Sbjct: 1129 RG 1130


>gi|80979117|gb|ABB54761.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 12/125 (9%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      L++    +QT GRA  N N+
Sbjct: 443 IQQFREGNANLMICSSVLEEGIDVQACNYVLILDP-----LKTFNMYVQTKGRARSN-NA 496

Query: 685 KVILYADTITK---SIQLAIDETTRRR-EKQLEHNKKHNINPQ--SVKEKIMEVIDPILL 738
             +L++  + +   S Q+A   T      + L+        P+   VK+   +VI P + 
Sbjct: 497 SFVLFSSELDRGKISQQIAQYRTAHAEIAEYLKDRVLERTEPEMYEVKQHFQDVIQPFIN 556

Query: 739 EDAAT 743
           E  A 
Sbjct: 557 EHGAV 561


>gi|25027994|ref|NP_738048.1| putative ATP-dependent DNA helicase recG [Corynebacterium efficiens
           YS-314]
 gi|259506386|ref|ZP_05749288.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
 gi|23493277|dbj|BAC18248.1| putative ATP-dependent DNA helicase recG [Corynebacterium efficiens
           YS-314]
 gi|259166027|gb|EEW50581.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
          Length = 707

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           R++ V  +H  +    + +++RD   G  DVLV   ++  G+D+    ++ IL+AD+ G 
Sbjct: 528 RDLTVGMLHGRMDPETKDQVMRDFATGGIDVLVSTTVIEVGIDVANATVMLILEADRFGV 587

Query: 665 LRSKTSLIQTIGRAARNVNSKVIL 688
               + + Q  GR  R   + + L
Sbjct: 588 ----SQIHQLRGRVGRGGFASLCL 607


>gi|15923740|ref|NP_371274.1| comF operon protein 1 [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926427|ref|NP_373960.1| hypothetical protein SA0705 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156979078|ref|YP_001441337.1| hypothetical protein SAHV_0747 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|13700641|dbj|BAB41938.1| SA0705 [Staphylococcus aureus subsp. aureus N315]
 gi|14246519|dbj|BAB56912.1| similar to comF operon protein 1 [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|156721213|dbj|BAF77630.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|285816452|gb|ADC36939.1| ComF operon protein A, DNA transporter ATPase [Staphylococcus
           aureus 04-02981]
          Length = 300

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 602 LYERNI-RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           +Y++ I ++ Y+HSE   + R E +  LR G FDV+    +L  G  +    +V I DA 
Sbjct: 186 VYKQKITKLTYVHSE--DVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVI-DAH 242

Query: 661 KEGFLRSKTSLIQTIGRAARNVN---SKVILYADTITKSIQLAIDETTR 706
           +     ++ +LIQ  GR  R +     KV+ + + ++ ++  A  E  R
Sbjct: 243 Q----YTQEALIQIAGRVGRKLECPAGKVLFFHEGVSMNMIQAKKEIQR 287


>gi|316965513|gb|EFV50216.1| ATP-dependent RNA helicase DHH1 [Trichinella spiralis]
          Length = 456

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 13/105 (12%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +A+ +TE  Y       Y+HS +    R  +  D R+G    LV  +LL  G+DI    +
Sbjct: 324 LAKKITELGYS----CYYIHSRMAQAHRNRVFHDFRMGYCRNLVCSDLLTRGIDIQAVNV 379

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR----NVNSKVILYADTIT 694
           V   D     F R+  + +  IGR+ R     +   +I Y D +T
Sbjct: 380 VVNFD-----FPRNAETYLHRIGRSGRFGHLGIAINLITYEDRMT 419


>gi|297833696|ref|XP_002884730.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
 gi|297330570|gb|EFH60989.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
          Length = 393

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + L+E +   N  V  MH ++   ER EI+   R
Sbjct: 267 DLYDTLTIT-----QAVIFCNTKRKVDFLSEKMRSSNFTVSSMHGDMPQKERDEIMNQFR 321

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G+  VL+  ++   G+D+ +  LV
Sbjct: 322 TGESRVLITTDVFARGIDVHQVSLV 346


>gi|270291823|ref|ZP_06198038.1| transcription-repair coupling factor [Streptococcus sp. M143]
 gi|270279351|gb|EFA25193.1| transcription-repair coupling factor [Streptococcus sp. M143]
          Length = 1167

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H ++  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924



 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDVA 347
            + + I+++ +G+  +Q ELL  L +  Y++      +G F + GD ++IF  S LE   
Sbjct: 133 GFKESIIRIAVGEEYDQYELLYKLKEIGYRKVTQVQTQGEFSIRGDILDIFEMSQLE--P 190

Query: 348 WRVSMFGNDIEEISEF 363
           +R+  FG++++ I  F
Sbjct: 191 FRIEFFGDEVDGIRTF 206


>gi|257068313|ref|YP_003154568.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
 gi|256559131|gb|ACU84978.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
          Length = 582

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           +V   I  A  +GL I+  + TKR A+ +   L +R      +H ++    R + +R  R
Sbjct: 270 EVMARILQARGRGLSIIF-MRTKRQADRVAGDLADRGFAAAPLHGDLGQGAREQALRAFR 328

Query: 630 LGKFDVLVGINLLREGLDI 648
            GK DVLV  ++   G+D+
Sbjct: 329 SGKIDVLVATDVAARGIDV 347


>gi|254671737|emb|CBA09550.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha153]
          Length = 399

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVP 313


>gi|219871623|ref|YP_002475998.1| ATP-dependent DNA helicase RecG [Haemophilus parasuis SH0165]
 gi|219691827|gb|ACL33050.1| ATP-dependent DNA helicase [Haemophilus parasuis SH0165]
          Length = 693

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL   L   ++R+  +H  +K  E+  I+ + +    D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLQHAL--PDLRIGLVHGRMKPQEKQAIMAEFKAADIDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I ++++ G       L Q  GR  R   +   V++Y   + K
Sbjct: 567 IENSERLGL----AQLHQLRGRVGRGATASHCVLMYKAPLGK 604


>gi|242812468|ref|XP_002485963.1| DEAD/DEAH box RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218714302|gb|EED13725.1| DEAD/DEAH box RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 582

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 9/125 (7%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           +T+++ +YD   L +    R L+ V TK  A+ L +YL+   +    +HS+    ER + 
Sbjct: 365 QTKMQCLYDL--LLSMPPARTLIFVNTKVQADRLDDYLFNLGLPSTSIHSDRTQREREDA 422

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA---DKEGFLRSKTSLIQTIGRAARN 681
           +   R GK  +L+   +   GLDI     V   D    D+ G        +  IGR AR 
Sbjct: 423 MSAFRTGKSPILIATGVSARGLDIKNVMHVVNFDLPSYDQGGI----DEYVHRIGRTARI 478

Query: 682 VNSKV 686
            N  +
Sbjct: 479 GNEGI 483


>gi|218437090|ref|YP_002375419.1| type III restriction protein res subunit [Cyanothece sp. PCC 7424]
 gi|218169818|gb|ACK68551.1| type III restriction protein res subunit [Cyanothece sp. PCC 7424]
          Length = 499

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 25/172 (14%)

Query: 574 EINLAAQQGLRILLTVLTKRMAE--------DLTEYLYERNIRVRYMHSEVKTLERIEII 625
           EI       LR+L  ++++   E        + T Y   +   +  +  +    ER +I+
Sbjct: 315 EIASGTDGKLRVLTELISQHYPEAILIFTNDNATVYRISQEFLIPAITHQTPVKERHDIL 374

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS- 684
           +  R G + +LV  ++L EG+D+P+  +  IL         S    +Q +GR  R   + 
Sbjct: 375 KRFREGDYKILVTSHVLNEGVDVPDARIAIILSGTG-----SAREYVQRLGRVLRKGKTP 429

Query: 685 -KVILYADTITKSIQLAIDETT--RRREKQLEHNKKHNINPQSVKEKIMEVI 733
            K+ +  + IT+      +E T  RRR  Q + N      P+  K + +E+I
Sbjct: 430 DKLAILYEVITEDTS---EERTSKRRRGAQEQQNP-----PEPPKHQQLELI 473


>gi|170741586|ref|YP_001770241.1| helicase domain-containing protein [Methylobacterium sp. 4-46]
 gi|168195860|gb|ACA17807.1| helicase domain protein [Methylobacterium sp. 4-46]
          Length = 550

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  I+RD R G+   L  + +L  G ++PE  LVA+L   +     S    +Q +GRA 
Sbjct: 287 ERERIVRDFREGRVRCLTSVGVLTTGFNVPEVDLVALLRPTQ-----STGLYVQQVGRAL 341

Query: 680 RNVNSK 685
           R    K
Sbjct: 342 RRAPGK 347


>gi|145478351|ref|XP_001425198.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392267|emb|CAK57800.1| unnamed protein product [Paramecium tetraurelia]
          Length = 472

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 5/130 (3%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TK   + L  YL +  +R + +H + +  ER  ++   + G   VLV  ++  
Sbjct: 315 KILIFCQTKMKCDQLQLYLIQEGMRCKSLHGDKRQSERDFVMNSFKRGDTTVLVATDVAS 374

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLDI +   V   D  K          +  IGR  R     V +      +  +LA D 
Sbjct: 375 RGLDIKDIEFVINFDMPK-----LIEDYVHRIGRTGRAGAQGVSISLFDSYEDAKLAGDL 429

Query: 704 TTRRREKQLE 713
               RE Q E
Sbjct: 430 VGVLRESQNE 439


>gi|148267210|ref|YP_001246153.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393259|ref|YP_001315934.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|253315816|ref|ZP_04839029.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255005541|ref|ZP_05144142.2| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794929|ref|ZP_05643908.1| helicase [Staphylococcus aureus A9781]
 gi|258418245|ref|ZP_05682510.1| helicase [Staphylococcus aureus A9763]
 gi|258421542|ref|ZP_05684467.1| helicase domain-containing protein [Staphylococcus aureus A9719]
 gi|258430737|ref|ZP_05688449.1| helicase domain-containing protein [Staphylococcus aureus A9299]
 gi|258441771|ref|ZP_05691043.1| helicase domain-containing protein [Staphylococcus aureus A8115]
 gi|258445788|ref|ZP_05693965.1| helicase domain-containing protein [Staphylococcus aureus A6300]
 gi|258449599|ref|ZP_05697701.1| helicase domain-containing protein [Staphylococcus aureus A6224]
 gi|258453999|ref|ZP_05701971.1| helicase domain-containing protein [Staphylococcus aureus A5937]
 gi|282894519|ref|ZP_06302748.1| competence protein ComFA [Staphylococcus aureus A8117]
 gi|282926616|ref|ZP_06334246.1| competence protein ComFA [Staphylococcus aureus A10102]
 gi|295406473|ref|ZP_06816279.1| competence protein ComFA [Staphylococcus aureus A8819]
 gi|296275159|ref|ZP_06857666.1| helicase domain-containing protein [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297245199|ref|ZP_06929073.1| competence protein ComFA [Staphylococcus aureus A8796]
 gi|147740279|gb|ABQ48577.1| helicase domain protein [Staphylococcus aureus subsp. aureus JH9]
 gi|149945711|gb|ABR51647.1| helicase domain protein [Staphylococcus aureus subsp. aureus JH1]
 gi|257788901|gb|EEV27241.1| helicase [Staphylococcus aureus A9781]
 gi|257839038|gb|EEV63517.1| helicase [Staphylococcus aureus A9763]
 gi|257842468|gb|EEV66892.1| helicase domain-containing protein [Staphylococcus aureus A9719]
 gi|257849409|gb|EEV73379.1| helicase domain-containing protein [Staphylococcus aureus A9299]
 gi|257852240|gb|EEV76167.1| helicase domain-containing protein [Staphylococcus aureus A8115]
 gi|257855364|gb|EEV78302.1| helicase domain-containing protein [Staphylococcus aureus A6300]
 gi|257857107|gb|EEV80006.1| helicase domain-containing protein [Staphylococcus aureus A6224]
 gi|257863864|gb|EEV86620.1| helicase domain-containing protein [Staphylococcus aureus A5937]
 gi|282591509|gb|EFB96581.1| competence protein ComFA [Staphylococcus aureus A10102]
 gi|282763232|gb|EFC03363.1| competence protein ComFA [Staphylococcus aureus A8117]
 gi|294968618|gb|EFG44641.1| competence protein ComFA [Staphylococcus aureus A8819]
 gi|297177870|gb|EFH37119.1| competence protein ComFA [Staphylococcus aureus A8796]
 gi|315129434|gb|EFT85427.1| helicase domain protein [Staphylococcus aureus subsp. aureus CGS03]
 gi|329724537|gb|EGG61044.1| putative ComF operon protein 1 [Staphylococcus aureus subsp. aureus
           21172]
          Length = 360

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 602 LYERNI-RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           +Y++ I ++ Y+HSE   + R E +  LR G FDV+    +L  G  +    +V I DA 
Sbjct: 246 VYKQKITKLTYVHSE--DVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVI-DAH 302

Query: 661 KEGFLRSKTSLIQTIGRAARNVN---SKVILYADTITKSIQLAIDETTR 706
           +     ++ +LIQ  GR  R +     KV+ + + ++ ++  A  E  R
Sbjct: 303 Q----YTQEALIQIAGRVGRKLECPAGKVLFFHEGVSMNMIQAKKEIQR 347


>gi|78062702|ref|YP_372610.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
 gi|77970587|gb|ABB11966.1| ATP dependent helicase, Lhr family [Burkholderia sp. 383]
          Length = 1515

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSE 615
           P+E   A    E VYD I   A      L+ V T+R AE +  +L +R  +  +   H  
Sbjct: 259 PLEPVMATDVWEQVYDRIAGLAAAHRTTLVFVNTRRTAERMARHLADRLGKEAIAAHHGS 318

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ G+  +LV    L  G+DI +  LV      + G  R     +Q +
Sbjct: 319 LAKEHRFDAEQRLKRGELKLLVATASLELGIDIGDVDLVC-----QVGSPRGIAPFLQRV 373

Query: 676 GRAARNVNS 684
           GR+  +V  
Sbjct: 374 GRSGHHVGG 382


>gi|323343283|ref|ZP_08083510.1| DNA helicase RecG [Prevotella oralis ATCC 33269]
 gi|323095102|gb|EFZ37676.1| DNA helicase RecG [Prevotella oralis ATCC 33269]
          Length = 700

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 33/224 (14%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTV--------LTKRMAEDLTEYLYER--N 606
           P   I    TQ+  +Y  I    +QG ++ +          +  +  ED  E L E   N
Sbjct: 456 PIQTIHKLDTQMTSLYQGIRQQIEQGRQVYIVFPLIKESEKIDLKNLEDGFETLKEAFPN 515

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
            R+  +H ++K  E+   ++    G+  +LV   ++  G+++P   ++ ILDA + G   
Sbjct: 516 YRMSKVHGQMKPAEKETEMQRFVNGETQILVSTTVIEVGVNVPNASVMVILDAQRFGL-- 573

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
             + L Q  GR  R  +    +   T   +     +ET +R +   E N    I+   +K
Sbjct: 574 --SQLHQLRGRVGRGADQSYCILVTTYKLT-----EETQKRIDIMCETNDGFRISEADLK 626

Query: 727 EKIMEVIDPILLE---------DAATTNISIDAQQLSLSKKKGK 761
            +      P  LE         D    NI+ D Q + L++ + +
Sbjct: 627 LR-----GPGDLEGTQQSGVAFDLKIANIARDGQLIQLARDEAQ 665


>gi|307596489|ref|YP_003902806.1| helicase domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307551690|gb|ADN51755.1| helicase domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 1035

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 8/112 (7%)

Query: 577 LAAQQGLRILLTVLTK--RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           + A+ G+   + V T+  R AE+L + L E    +  + +  KT +R  I +    G + 
Sbjct: 874 VKAEVGIGSKIIVFTQFIRQAEELYKVLKEELGPIVALITS-KTSDRDSIFKAFARGVYK 932

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V+V   +L EG+D+P+  +  IL         S+  +IQ +GR  R  + KV
Sbjct: 933 VIVATTVLDEGIDVPDADVAIILSGTG-----SQRQMIQRVGRVVRASDGKV 979


>gi|300122648|emb|CBK23215.2| unnamed protein product [Blastocystis hominis]
          Length = 624

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 101/231 (43%), Gaps = 41/231 (17%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNI----RVRYMHSEVKTLERIEIIRDLRL 630
           I+L  Q+  +I++  LT    + LT  L   NI    ++R +H  +   +R++ + D R 
Sbjct: 252 IHLHPQE--KIIVFFLTCAQVDFLTSALLSLNILNGIKLRSLHGRMVQKKRVKTMEDFRK 309

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILY 689
            +  VL   ++   G+DIP+   +   D  ++         +  +GR AR     + +L+
Sbjct: 310 PEPGVLFCTDVAARGIDIPDVDWIIQFDPPQD-----PAFFVHRVGRTARAGKKGQSLLF 364

Query: 690 ADTITKSIQLAIDETTRRR--------EKQLEHNKKHNINP-QSVKEKIMEVIDPILLED 740
            +    S + A    TRRR        EK  E  +K ++   QS++E+  +  D  L E 
Sbjct: 365 LE----STEEAYVSFTRRRGVPLIEWEEKWDEAMRKESLETLQSIRERCAK--DRDLYEK 418

Query: 741 AAT---TNISIDAQQLSLSKKKGKAHLKSLRKQ---MHLAADNLNFEEAAR 785
           + T    N+ +        +KKG  HL++ R       L  D+L+    AR
Sbjct: 419 SVTGFVANVRV--------RKKGSLHLQAYRNHDCNFILRFDDLDLASLAR 461


>gi|257469367|ref|ZP_05633461.1| primosomal protein N' [Fusobacterium ulcerans ATCC 49185]
 gi|317063613|ref|ZP_07928098.1| primosomal protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689289|gb|EFS26124.1| primosomal protein [Fusobacterium ulcerans ATCC 49185]
          Length = 773

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            +R+ E++ +Y   R IRV    S+ K     ++  D   GK+D+++G  ++ +GL  P 
Sbjct: 538 VERVEEEVKKYFDVRVIRVDSESSKNKDFYE-KMYFDFLGGKYDIMIGTQMISKGLHFPN 596

Query: 651 CGLVAILDAD 660
             LV +++AD
Sbjct: 597 VTLVGVINAD 606


>gi|257125975|ref|YP_003164089.1| type III restriction protein res subunit [Leptotrichia buccalis
           C-1013-b]
 gi|257049914|gb|ACV39098.1| type III restriction protein res subunit [Leptotrichia buccalis
           C-1013-b]
          Length = 1090

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 15/95 (15%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           M E+ T+  Y+  +    + + + + +R EI+   +  K ++L  +++L EG+DIP   L
Sbjct: 567 MKEEFTKKGYKSAV----ITANISSNDRAEILDKFKNKKIEILCVVDILNEGIDIPTINL 622

Query: 654 VAILDADKEGFLR---SKTSLIQTIGRAARNVNSK 685
           +         FLR   S T  IQ IGR  R   +K
Sbjct: 623 LL--------FLRPTMSSTIFIQQIGRGLRKAENK 649


>gi|195487840|ref|XP_002092062.1| Dcr-2 [Drosophila yakuba]
 gi|194178163|gb|EDW91774.1| Dcr-2 [Drosophila yakuba]
          Length = 1730

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 12/125 (9%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      L++    +QT GRA  N N+
Sbjct: 454 IQQFREGNANLMICSSVLEEGIDVQACNYVLILDP-----LKTFNMYVQTKGRARSN-NA 507

Query: 685 KVILYADTITK---SIQLAIDETTRRR-EKQLEHNKKHNINPQ--SVKEKIMEVIDPILL 738
             +L++  + +   S Q+A   T      + L+        P+   VK+   +VI P + 
Sbjct: 508 SFVLFSSELDRGKISQQIAQYRTAHAEIAEYLKDRVLERTEPEMYEVKQHFQDVIQPFIN 567

Query: 739 EDAAT 743
           E  A 
Sbjct: 568 EHGAV 572


>gi|193606171|ref|XP_001946134.1| PREDICTED: ATP-dependent RNA helicase vasa, isoform A-like
           [Acyrthosiphon pisum]
          Length = 641

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V  KR A+ +  +L E N     +H + +  ER + +RD +  K  VLV   +   G
Sbjct: 479 IVFVEQKRQADFIAAFLSELNYPTTSIHGDREQPEREKALRDFKTKKMKVLVATAVAARG 538

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           LDI   G+  +++ D     ++    +  IGR  R  NS
Sbjct: 539 LDI--MGVTTVVNFD---LPKTIEEYVHRIGRTGRLGNS 572


>gi|183014151|dbj|BAG24403.1| hypothetical protein [Photobacterium damselae subsp. damselae]
          Length = 437

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 64/140 (45%), Gaps = 6/140 (4%)

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
           Q +  ++I    G  DP     +  TQ+   +   +   ++  R L   ++K+ A+ +  
Sbjct: 69  QFVNYQEIPWRNGKFDPEALDNAFATQLRAQHILKHWQEKKQTRTLAFCISKKHADYMAN 128

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           +     I+   ++S+ + + R E ++ L  G+ D++  ++L  EG DIP    + ++   
Sbjct: 129 FFTLAGIKAIAVYSDSE-VRRNEALKQLEHGEIDIIFSVDLFNEGTDIPAIDTILMIRPT 187

Query: 661 KEGFLRSKTSLIQTIGRAAR 680
           +     SK   +Q +GR  R
Sbjct: 188 E-----SKILFLQQLGRGLR 202


>gi|119483248|ref|ZP_01618662.1| Excinuclease ABC, C subunit [Lyngbya sp. PCC 8106]
 gi|119458015|gb|EAW39137.1| Excinuclease ABC, C subunit [Lyngbya sp. PCC 8106]
          Length = 649

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 26/32 (81%)

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           L SL +QM  AA+NLNFE AA+IRD+I+ ++S
Sbjct: 217 LNSLTQQMATAAENLNFEIAAKIRDQIQGVQS 248


>gi|108742054|gb|AAI17661.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TK+  ++LT  +         +H +    ER  ++ + R GK  +L
Sbjct: 337 IMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPIL 396

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N
Sbjct: 397 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN 438


>gi|30264357|ref|NP_846734.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47529804|ref|YP_021153.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187184|ref|YP_030436.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|49481294|ref|YP_038344.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141217|ref|YP_085615.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus E33L]
 gi|65321660|ref|ZP_00394619.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|118479458|ref|YP_896609.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|165872088|ref|ZP_02216728.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167634514|ref|ZP_02392834.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167638543|ref|ZP_02396819.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170687333|ref|ZP_02878550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|190566188|ref|ZP_03019107.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|196034885|ref|ZP_03102292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196041643|ref|ZP_03108935.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|196046361|ref|ZP_03113587.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|218905422|ref|YP_002453256.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225866267|ref|YP_002751645.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227817061|ref|YP_002817070.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228916918|ref|ZP_04080480.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929329|ref|ZP_04092354.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935605|ref|ZP_04098420.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947999|ref|ZP_04110285.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228987535|ref|ZP_04147654.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229123824|ref|ZP_04253018.1| ATP-dependent RNA helicase yqfR [Bacillus cereus 95/8201]
 gi|229157899|ref|ZP_04285973.1| ATP-dependent RNA helicase yqfR [Bacillus cereus ATCC 4342]
 gi|229186526|ref|ZP_04313688.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BGSC 6E1]
 gi|229604072|ref|YP_002868575.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254684044|ref|ZP_05147904.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254721878|ref|ZP_05183667.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. A1055]
 gi|254736393|ref|ZP_05194099.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254741430|ref|ZP_05199117.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Kruger B]
 gi|254753933|ref|ZP_05205968.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Vollum]
 gi|254757805|ref|ZP_05209832.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Australia 94]
 gi|301055779|ref|YP_003793990.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus anthracis
           CI]
 gi|30259015|gb|AAP28220.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47504952|gb|AAT33628.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49181111|gb|AAT56487.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|49332850|gb|AAT63496.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974686|gb|AAU16236.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           E33L]
 gi|118418683|gb|ABK87102.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|164712219|gb|EDR17756.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167513391|gb|EDR88761.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167529966|gb|EDR92701.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170668528|gb|EDT19274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|190563107|gb|EDV17073.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|195992424|gb|EDX56385.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196022831|gb|EDX61512.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|196027631|gb|EDX66246.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|218539590|gb|ACK91988.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225787455|gb|ACO27672.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227005061|gb|ACP14804.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228596957|gb|EEK54615.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BGSC 6E1]
 gi|228625558|gb|EEK82311.1| ATP-dependent RNA helicase yqfR [Bacillus cereus ATCC 4342]
 gi|228659645|gb|EEL15291.1| ATP-dependent RNA helicase yqfR [Bacillus cereus 95/8201]
 gi|228772267|gb|EEM20714.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228811689|gb|EEM58024.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228824045|gb|EEM69862.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830343|gb|EEM75955.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842742|gb|EEM87828.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268480|gb|ACQ50117.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|300377948|gb|ADK06852.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           biovar anthracis str. CI]
          Length = 436

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 66/125 (52%), Gaps = 9/125 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA+ + + L ER ++V  +H ++   +R ++++ +R  +F  +V  +L   G+DI  
Sbjct: 255 TKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI-TKSIQLAIDETTRRRE 709
            G+  +++ +    L      +  +GR AR  +S +   A TI   + + A+D   ++R 
Sbjct: 314 -GISHVINYELPSDL---DFFVHRVGRTARAGHSGI---AVTIYDPANEEALDSLEKQRH 366

Query: 710 KQLEH 714
            + +H
Sbjct: 367 IEFKH 371


>gi|332530190|ref|ZP_08406138.1| transcription-repair coupling factor [Hylemonella gracilis ATCC
           19624]
 gi|332040382|gb|EGI76760.1| transcription-repair coupling factor [Hylemonella gracilis ATCC
           19624]
          Length = 1177

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/115 (19%), Positives = 51/115 (44%), Gaps = 1/115 (0%)

Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
           D +++ + + +Y +      +    + K+   +++  L S L    Y      +  G + 
Sbjct: 115 DLVLMPATTALYRLAPPSFLAATTFEFKVKQKLDEAALRSQLTLAGYNHVTQVVSPGEYA 174

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           V G  I++FP     V +RV +F N+++ I  F P + + +  V  +++     +
Sbjct: 175 VRGGLIDLFPMG-SAVPYRVDLFDNEVDSIRTFDPDSQRSLYPVPEVRLLPGREF 228


>gi|329577423|gb|EGG58873.1| TRCF domain protein [Enterococcus faecalis TX1467]
          Length = 637

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + R+ Y H ++  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G  
Sbjct: 314 DARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL- 372

Query: 666 RSKTSLIQTIGRAARN 681
              ++L Q  GR  R+
Sbjct: 373 ---STLYQLRGRVGRS 385


>gi|229163230|ref|ZP_04291185.1| ATP-dependent RNA helicase yqfR [Bacillus cereus R309803]
 gi|228620293|gb|EEK77164.1| ATP-dependent RNA helicase yqfR [Bacillus cereus R309803]
          Length = 436

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 66/125 (52%), Gaps = 9/125 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA+ + + L ER ++V  +H ++   +R ++++ +R  +F  +V  +L   G+DI  
Sbjct: 255 TKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI-TKSIQLAIDETTRRRE 709
            G+  +++ +    L      +  +GR AR  +S +   A TI   + + A+D   ++R 
Sbjct: 314 -GISHVINYELPSDL---DFFVHRVGRTARAGHSGI---AVTIYDPANEEALDSLEKQRH 366

Query: 710 KQLEH 714
            + +H
Sbjct: 367 IEFKH 371


>gi|254416593|ref|ZP_05030344.1| DEAD/DEAH box helicase domain protein [Microcoleus chthonoplastes
           PCC 7420]
 gi|196176559|gb|EDX71572.1| DEAD/DEAH box helicase domain protein [Microcoleus chthonoplastes
           PCC 7420]
          Length = 1053

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 14/104 (13%)

Query: 592 KRMAEDLTEYLYERN-----IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           K +   + E+L +R       +VR  +  +K+  R +II+ L  G+  +++  + L  G+
Sbjct: 512 KSLLNQIQEHLEQRGQGYLKSQVRIFYGSLKSHHRRQIIQQLSAGEISIILATSALEAGI 571

Query: 647 DIPE--CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           DIPE  C L+        G+  S   L Q  GRA R     VI 
Sbjct: 572 DIPELDCCLL-------RGYPGSLMQLRQRQGRAGRKSPGLVIF 608


>gi|270308438|ref|YP_003330496.1| ATP-dependent DNA helicase [Dehalococcoides sp. VS]
 gi|270154330|gb|ACZ62168.1| ATP-dependent DNA helicase [Dehalococcoides sp. VS]
          Length = 818

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H  +   E+  I++    GK D+LV   ++  G+DIP   ++ +  AD+ G    
Sbjct: 641 KVALLHGRMNAAEKESIMKHFNEGKMDILVSTPVVEVGIDIPNATVMLVESADRFGL--- 697

Query: 668 KTSLIQTIGRAARNVNSKVILY 689
            + L Q  GR  R       ++
Sbjct: 698 -SQLHQFRGRVGRGTEQSYCMF 718


>gi|164424171|ref|XP_962960.2| ATP-dependent RNA helicase dbp-2 [Neurospora crassa OR74A]
 gi|157070404|gb|EAA33724.2| ATP-dependent RNA helicase dbp-2 [Neurospora crassa OR74A]
          Length = 546

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TKR+A+D+T +L +       +H + +  ER  ++   + GK  ++V  ++  
Sbjct: 367 KILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVAS 426

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+    +  +L+ D   +  +    I  IGR  R
Sbjct: 427 RGIDVRN--ITHVLNYD---YPNNSEDYIHRIGRTGR 458


>gi|141796059|gb|AAI34864.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TK+  ++LT  +         +H +    ER  ++ + R GK  +L
Sbjct: 337 IMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPIL 396

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N
Sbjct: 397 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN 438


>gi|37523406|ref|NP_926783.1| transcription-repair coupling factor [Gloeobacter violaceus PCC
           7421]
 gi|35214410|dbj|BAC91778.1| transcription-repair coupling factor [Gloeobacter violaceus PCC
           7421]
          Length = 1154

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 1/108 (0%)

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            IV +S +    +   E  ++  + L+ G  +  ++L   LV+  Y R       G F  
Sbjct: 119 AIVCTSRALHPHLPPPEYLAEYCLSLEAGAGLSIEKLTGELVRLGYLRVPQVEAEGQFSR 178

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            GD ++ FP   E +  R   FG+++E + EF P T + +  V+ + I
Sbjct: 179 RGDILDFFPVSAE-IPVRAEWFGDELERLREFDPATQRSLDAVQQVAI 225


>gi|314927518|gb|EFS91349.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
 gi|328907794|gb|EGG27557.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium sp.
           P08]
          Length = 536

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 64/133 (48%), Gaps = 8/133 (6%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A    ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G   +L
Sbjct: 278 LQANDAEKVIIFCRTKRACQRLSDDLNDRGFKARAIHGDLTQVAREKALKRFRHGDVTIL 337

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA-RNVNSKVILYADT--- 692
           V  ++   G+D+   G+  +++ +     ++    I   GRA  + V   ++ +AD    
Sbjct: 338 VATDVAARGIDV--TGVSHVINHECPEDEKTYVHRIGRTGRAGTKGVAVTLVDWADVTRW 395

Query: 693 --ITKSIQLAIDE 703
             I K++ L + E
Sbjct: 396 KLIDKALNLELSE 408


>gi|313837601|gb|EFS75315.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
 gi|314972540|gb|EFT16637.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
          Length = 536

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 64/133 (48%), Gaps = 8/133 (6%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A    ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G   +L
Sbjct: 278 LQANDAEKVIIFCRTKRACQRLSDDLNDRGFKARAIHGDLTQVAREKALKRFRHGDVTIL 337

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA-RNVNSKVILYADT--- 692
           V  ++   G+D+   G+  +++ +     ++    I   GRA  + V   ++ +AD    
Sbjct: 338 VATDVAARGIDV--TGVSHVINHECPEDEKTYVHRIGRTGRAGTKGVAVTLVDWADVTRW 395

Query: 693 --ITKSIQLAIDE 703
             I K++ L + E
Sbjct: 396 KLIDKALNLELSE 408


>gi|312622714|ref|YP_004024327.1| primosomal protein n' [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203181|gb|ADQ46508.1| primosomal protein N' [Caldicellulosiruptor kronotskyensis 2002]
          Length = 724

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 17/110 (15%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI--EIIRDLRLGKFDVLVGINLLREGLDI 648
           T+++ E++  Y   ++ RV  M S+  + +    ++++  R  + D+LVG  ++ +GL  
Sbjct: 488 TQKIEEEIKAYF--KDARVLRMDSDATSKKDATQQLLKKFREKEADILVGTQMIAKGLHF 545

Query: 649 PECGLVAILDAD----------KEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           P+  LV ++DAD          +E   R+   L Q  GR+ R    KVI+
Sbjct: 546 PDLTLVGVIDADILLNMPDFRSRE---RTFQLLTQVAGRSGREKPGKVII 592


>gi|301601272|dbj|BAJ12168.1| DEAD box protein [Rana rugosa]
          Length = 736

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  +    +H + +  ER   +RD R G+  V+V  ++  
Sbjct: 552 RTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQRERETALRDFRTGQCPVIVATSVAA 611

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D   +         +  IGR  R  N+ + I + D
Sbjct: 612 RGLDIENVSHVINFDIPDD-----IDEYVHRIGRTGRCGNTGRAISFFD 655


>gi|289618319|emb|CBI55043.1| unnamed protein product [Sordaria macrospora]
          Length = 655

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGL 653
           ED+T          R +  +    ER +I+   +  +F VLV   +  EG DIP  +C L
Sbjct: 287 EDMTATFRRYGYDARSVAGDTPVKERAQILDAFKKFEFPVLVNCGVFTEGTDIPNIDCIL 346

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR 680
           +A          RSK  LIQ IGR  R
Sbjct: 347 MARP-------TRSKNLLIQMIGRGMR 366


>gi|270290190|ref|ZP_06196416.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
 gi|270281727|gb|EFA27559.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
          Length = 511

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++ + L  R      +H ++    R+ I+   R G+ D+LV  ++   GLDI  
Sbjct: 248 TKRRVDEVAKGLVARGYNAAGIHGDLTQQRRMNILHQFRDGQLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---IPQDPESYVHRIGRTGR 332


>gi|269202370|ref|YP_003281639.1| comf operon protein 1, putative [Staphylococcus aureus subsp.
           aureus ED98]
 gi|262074660|gb|ACY10633.1| comf operon protein 1, putative [Staphylococcus aureus subsp.
           aureus ED98]
          Length = 312

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 602 LYERNI-RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           +Y++ I ++ Y+HSE   + R E +  LR G FDV+    +L  G  +    +V I DA 
Sbjct: 198 VYKQKITKLTYVHSE--DVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVI-DAH 254

Query: 661 KEGFLRSKTSLIQTIGRAARNVN---SKVILYADTITKSIQLAIDETTR 706
           +     ++ +LIQ  GR  R +     KV+ + + ++ ++  A  E  R
Sbjct: 255 Q----YTQEALIQIAGRVGRKLECPAGKVLFFHEGVSMNMIQAKKEIQR 299


>gi|219880759|gb|ACL51654.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Callithrix
           jacchus]
          Length = 654

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L ++LY        +H +    +R E +R  R G+  +LV   +   G
Sbjct: 439 LVFVETKKGADSLEDFLYHEGHACTSIHGDRSQRDREEALRQFRSGRSPILVATAVAARG 498

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVI 687
           LDI     V   D  +D E ++    +T  +  +G A    N K +
Sbjct: 499 LDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNV 544


>gi|198424759|ref|XP_002127650.1| PREDICTED: similar to Ddx10 protein [Ciona intestinalis]
          Length = 736

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           ++H  +  L R+ + ++    KF VLV  ++   GLD PE   V  LD  ++       +
Sbjct: 323 HLHGRMNQLRRMSVYQEFCRKKFAVLVATDIAARGLDFPEIDWVVQLDCPEDA-----DT 377

Query: 671 LIQTIGRAAR---NVNSKVIL 688
            I   GR AR   N NS ++L
Sbjct: 378 YIHRAGRTARYNGNGNSLLVL 398


>gi|167565949|ref|ZP_02358865.1| ATP-dependent DNA helicase [Burkholderia oklahomensis EO147]
          Length = 652

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612
           PPV +    A    E +YD I   A      L+ V T+RMAE    +L +R     +   
Sbjct: 249 PPVPLGPVMANDVWERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAH 308

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +
Sbjct: 309 HGSLAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVDLVCQL-----GSPRGIAPFL 363

Query: 673 QTIGRAARNVNS 684
           Q +GR+   V  
Sbjct: 364 QRVGRSGHRVGG 375


>gi|159154994|gb|AAI54494.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TK+  ++LT  +         +H +    ER  ++ + R GK  +L
Sbjct: 337 IMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPIL 396

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  ++   GLD+ +   V   D     +  S    +  IGR AR+ N
Sbjct: 397 IATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTN 438


>gi|146329601|ref|YP_001209906.1| ATP-dependent DNA helicase RecG [Dichelobacter nodosus VCS1703A]
 gi|146233071|gb|ABQ14049.1| ATP-dependent DNA helicase RecG [Dichelobacter nodosus VCS1703A]
          Length = 684

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 8/108 (7%)

Query: 595 AEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
            E +T YL     ++RV ++H ++ +  R E +     G  D+LV   ++  G+D+    
Sbjct: 495 GEAMTAYLQRSLPDLRVEFVHGKLSSDARREKMEAFAAGAVDILVATTVIEVGVDVANAT 554

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           L+ I +A++ G     + L Q  GR  R       V+LY   + ++ Q
Sbjct: 555 LMIIENAERFGL----SQLHQLRGRVGRGSQQSYCVLLYQAPLGENAQ 598


>gi|147671700|ref|YP_001215271.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|153216449|ref|ZP_01950468.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587]
 gi|153802978|ref|ZP_01957564.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3]
 gi|153830498|ref|ZP_01983165.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39]
 gi|254292037|ref|ZP_04962815.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226]
 gi|297580174|ref|ZP_06942101.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385]
 gi|124114251|gb|EAY33071.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587]
 gi|124121501|gb|EAY40244.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3]
 gi|146314083|gb|ABQ18623.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|148874031|gb|EDL72166.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39]
 gi|150422062|gb|EDN14031.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226]
 gi|227015452|gb|ACP11661.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|297535820|gb|EFH74654.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385]
          Length = 663

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 269 IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 328

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 329 LDVPR--ITHVYNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQIRMLRTIERVT 384

Query: 706 RR--REKQLEHNKK 717
           R    E QL H  K
Sbjct: 385 RSSMEEIQLPHRDK 398


>gi|170735723|ref|YP_001776983.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169817911|gb|ACA92493.1| DEAD/H associated domain protein [Burkholderia cenocepacia MC0-3]
          Length = 1518

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSE 615
           P+E   A    E VYD I   A      L+ V T+R AE +  +L +R  +  +   H  
Sbjct: 275 PLEPVMATDVWEQVYDRIAGLAAAHRTTLVFVNTRRTAERMARHLADRLGKDAIAAHHGS 334

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ G+  +LV    L  G+DI +  LV      + G  R     +Q +
Sbjct: 335 LAKEHRFDAEQRLKRGELKLLVATASLELGIDIGDVDLVC-----QVGSPRGIAPFLQRV 389

Query: 676 GRAARNVNS 684
           GR+  +V  
Sbjct: 390 GRSGHHVGG 398


>gi|83282365|ref|XP_729738.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23488393|gb|EAA21303.1| Helicase conserved C-terminal domain, putative [Plasmodium yoelii
           yoelii]
          Length = 212

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RI++ V TKR A+ +T+ L    +    +H + K  ER  ++ D + GK  +L+  ++  
Sbjct: 34  RIIVFVETKRSADFITKALRLEGMPALCIHGDKKQDERRWVLNDFKTGKSPILIATDVAS 93

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLDI     V   D     F       +  IGR  R
Sbjct: 94  RGLDIKNVKFVINYD-----FPNQIEDYVHRIGRTGR 125


>gi|307326032|ref|ZP_07605230.1| excinuclease ABC, C subunit [Streptomyces violaceusniger Tu 4113]
 gi|306888254|gb|EFN19242.1| excinuclease ABC, C subunit [Streptomyces violaceusniger Tu 4113]
          Length = 736

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 27/34 (79%)

Query: 763 HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +L+ L +QMH AA+++ +E+AAR+RD+I  LK +
Sbjct: 210 YLRRLEQQMHEAAEDMEYEKAARLRDDIGALKRA 243


>gi|290996658|ref|XP_002680899.1| predicted protein [Naegleria gruberi]
 gi|284094521|gb|EFC48155.1| predicted protein [Naegleria gruberi]
          Length = 452

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            ++ D+ D++ +   +  R L+   TK+  + +TE L E       +H E K  ER  ++
Sbjct: 272 ARLTDLLDKL-IKNPEDCRTLVFCKTKKRTDVVTERLREAGWPSLSIHGERKQEEREWVL 330

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            + R GK  +LV  ++   GLD+     V   D   E  + S    I   GRA +  NS
Sbjct: 331 EEFRSGKTPILVATDVAARGLDVENVKYVINYDMPHE--IDSYIHRIGRTGRAGKEGNS 387


>gi|283786193|ref|YP_003366058.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
 gi|282949647|emb|CBG89266.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
          Length = 444

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +VLV  ++  
Sbjct: 250 RTIVFVRKRERVHELAEQLRLAGISNCYLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DIP+   V   D       RS  + +  IGR  R
Sbjct: 310 RGIDIPDVSHVINFD-----MPRSGDTYLHRIGRTGR 341


>gi|225075877|ref|ZP_03719076.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens
           NRL30031/H210]
 gi|224952823|gb|EEG34032.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens
           NRL30031/H210]
          Length = 463

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           TK M E + + LYE+      +H ++    R   + DLR G+  +LV  ++   G+D+P
Sbjct: 255 TKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVP 313


>gi|195146542|ref|XP_002014243.1| GL19047 [Drosophila persimilis]
 gi|194106196|gb|EDW28239.1| GL19047 [Drosophila persimilis]
          Length = 386

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++        ++   T+R  + LT+ +   N  V  MH +++  +R  I++  R
Sbjct: 245 DLYDTLSITQS-----VIFCNTRRKVDQLTQEMSSHNFTVSAMHGDMEQRDREVIMKQFR 299

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 300 SGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 337


>gi|168183334|ref|ZP_02617998.1| restriction/helicase domain protein [Clostridium botulinum Bf]
 gi|182673425|gb|EDT85386.1| restriction/helicase domain protein [Clostridium botulinum Bf]
          Length = 988

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 15/125 (12%)

Query: 564 ARTQVEDVYDEINLAAQQGLRI--LLTVLTKRMAEDLTEYLYERNIRVRYMHSEV----- 616
           A  +V+ + D+IN     G R+  L+    K+ A++L++    +  +   +  E      
Sbjct: 448 AEERVKHIIDKINFYGYCGDRVKGLMFCSNKKEAKELSDIFNTKGYKTVALTGESSQEER 507

Query: 617 -KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            K +ER+E  +D  L   D +  +++  EG+DIP    V +L   K   +      +Q +
Sbjct: 508 EKAIERLE--QDETLNSLDYIFTVDIFNEGVDIPFVNQVVMLRPTKSSII-----FVQQL 560

Query: 676 GRAAR 680
           GR  R
Sbjct: 561 GRGLR 565


>gi|94986638|ref|YP_594571.1| primosomal protein N' [Lawsonia intracellularis PHE/MN1-00]
 gi|94730887|emb|CAJ54250.1| Primosomal protein N' (replication factor Y)-superfamily II
           helicase [Lawsonia intracellularis PHE/MN1-00]
          Length = 792

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQR---PAIVMAPNKILAAQLYSEFKNFFP 218
           ++ K  LL G+TGSGKT    ++I+   R     +V+AP   LA +L  E K  FP
Sbjct: 274 NQAKTFLLFGITGSGKTAIYLEIIQECIRNNQSVLVLAPEVALALKLQHEIKTVFP 329


>gi|47218719|emb|CAG05691.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 727

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           +H ++   +R   ++  R G F+VLV  N+   GLDIPE  LV
Sbjct: 435 LHGDIPQKQRETTLKGFRKGSFEVLVATNVAARGLDIPEVDLV 477


>gi|257142446|ref|ZP_05590708.1| DEAD-box ATP dependent DNA helicase [Burkholderia thailandensis
           E264]
          Length = 1566

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612
           PPV +    A    E +YD +   A      L+ V T+RMAE    +L +R     +   
Sbjct: 256 PPVPLGPVMANDVWERLYDRVAELAAAHRTTLVFVNTRRMAERAARHLADRLGPDAIAAH 315

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +
Sbjct: 316 HGSLAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVDLVCQL-----GSPRGIAPFL 370

Query: 673 QTIGRAARNVNS 684
           Q +GR+  +V  
Sbjct: 371 QRVGRSGHHVGG 382


>gi|256028462|ref|ZP_05442296.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D11]
 gi|289766383|ref|ZP_06525761.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D11]
 gi|289717938|gb|EFD81950.1| ATP-dependent DNA helicase recG [Fusobacterium sp. D11]
          Length = 689

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N ++  +H ++K  E+ E++   +  ++D+L+   ++  G+D+P   ++ I +A++ G  
Sbjct: 511 NKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFGL- 569

Query: 666 RSKTSLIQTIGRAARNVN-SKVILYADTITKS 696
              ++L Q  GR  R    S   L +++IT++
Sbjct: 570 ---SALHQLRGRVGRGSKQSYCFLISNSITEN 598


>gi|255027250|ref|ZP_05299236.1| hypothetical protein LmonocytFSL_14578 [Listeria monocytogenes FSL
           J2-003]
          Length = 297

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 12/106 (11%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           +K++AE     L E   +RV Y H ++ T +RI I +    G+ DV+   +    G+D  
Sbjct: 66  SKKLAESTAHELSEIAELRVAYYHGDMDTEDRIIIQQQFVYGQLDVICATSAFGMGIDKA 125

Query: 650 ECGLVA--ILDADKEGFLRSKTSLIQTIGRAARNVNSKV--ILYAD 691
           +   V    + AD E +L       Q IGRA R+    V  +LYA+
Sbjct: 126 DIRYVIHYHMPADLEAYL-------QEIGRAGRDGEDSVAILLYAN 164


>gi|239929077|ref|ZP_04686030.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 428

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A DL + L +R      +H ++    R + +R  R GK DVLV  ++   G+D+
Sbjct: 231 TKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDV 288


>gi|237793972|ref|YP_002861524.1| restriction/helicase domain protein [Clostridium botulinum Ba4 str.
           657]
 gi|229260678|gb|ACQ51711.1| restriction/helicase domain protein [Clostridium botulinum Ba4 str.
           657]
          Length = 988

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 15/125 (12%)

Query: 564 ARTQVEDVYDEINLAAQQGLRI--LLTVLTKRMAEDLTEYLYERNIRVRYMHSEV----- 616
           A  +V+ + D+IN     G R+  L+    K+ A++L++    +  +   +  E      
Sbjct: 448 AEERVKHIIDKINFYGYCGDRVKGLMFCSNKKEAKELSDIFNTKGYKTVALTGESSQEER 507

Query: 617 -KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            K +ER+E  +D  L   D +  +++  EG+DIP    V +L   K   +      +Q +
Sbjct: 508 EKAIERLE--QDETLNSLDYIFTVDIFNEGVDIPFVNQVVMLRPTKSSII-----FVQQL 560

Query: 676 GRAAR 680
           GR  R
Sbjct: 561 GRGLR 565


>gi|218133743|ref|ZP_03462547.1| hypothetical protein BACPEC_01612 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991118|gb|EEC57124.1| hypothetical protein BACPEC_01612 [Bacteroides pectinophilus ATCC
           43243]
          Length = 494

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +I V Y+H ++K   + EI+     G+  VLV   ++  G+++P   ++ I +AD+ G  
Sbjct: 397 SINVEYLHGKMKPAVKDEIMERFHSGQTQVLVSTTVIEVGVNVPNATVMLIENADRFGL- 455

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADT 692
                L Q  GR  R       ++  T
Sbjct: 456 ---AQLHQLRGRVGRGAYQSYCIFVGT 479


>gi|83716928|ref|YP_439327.1| DEAD-box ATP dependent DNA helicase [Burkholderia thailandensis
           E264]
 gi|83650753|gb|ABC34817.1| ATP-dependent helicase, DEAD/DEAH family [Burkholderia
           thailandensis E264]
          Length = 1626

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612
           PPV +    A    E +YD +   A      L+ V T+RMAE    +L +R     +   
Sbjct: 316 PPVPLGPVMANDVWERLYDRVAELAAAHRTTLVFVNTRRMAERAARHLADRLGPDAIAAH 375

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +
Sbjct: 376 HGSLAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVDLVCQL-----GSPRGIAPFL 430

Query: 673 QTIGRAARNVNS 684
           Q +GR+  +V  
Sbjct: 431 QRVGRSGHHVGG 442


>gi|295399200|ref|ZP_06809182.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110198|ref|YP_003988514.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
 gi|294978666|gb|EFG54262.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215299|gb|ADP73903.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
          Length = 435

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E+ LA    L I+ T  TK+MA+++ + L E+ ++V  +H ++   ER ++++ +R  +F
Sbjct: 239 EMLLAYNPYLAIVFTN-TKKMADEVADKLIEKGMKVGILHGDLSPRERKKMMKQIRDLEF 297

Query: 634 DVLVGINLLREGLDI 648
             +V  +L   G+DI
Sbjct: 298 QYIVATDLAARGIDI 312


>gi|254567599|ref|XP_002490910.1| Putative ATP-dependent RNA helicase of the DEAD-box family involved
           in ribosomal biogenesis [Pichia pastoris GS115]
 gi|238030707|emb|CAY68630.1| Putative ATP-dependent RNA helicase of the DEAD-box family involved
           in ribosomal biogenesis [Pichia pastoris GS115]
 gi|328352552|emb|CCA38951.1| hypothetical protein PP7435_Chr2-1277 [Pichia pastoris CBS 7435]
          Length = 498

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+  L K+ A  +   L  +  +V  +H ++   +R + + D + GK  +L+  ++  
Sbjct: 336 KILIFALYKKEATRVERTLNYKGYKVSAIHGDLSQQQRTQSLNDFKTGKSSLLLATDVAA 395

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLDIP   +V  L      F  +    +  IGR  R
Sbjct: 396 RGLDIPNVKVVINLT-----FPLTVEDYVHRIGRTGR 427


>gi|183981369|ref|YP_001849660.1| ATP-dependent RNA helicase RhlE [Mycobacterium marinum M]
 gi|183174695|gb|ACC39805.1| ATP-dependent RNA helicase RhlE [Mycobacterium marinum M]
          Length = 517

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A ++G  ++ T  TKR A+ + + L ER   V  +H ++  + R + ++  R G  +VLV
Sbjct: 266 ARERGATMIFT-RTKRTAQKVADELNERGFAVGAVHGDLGQVAREKALKSFRSGSVNVLV 324

Query: 638 GINLLREGLDI 648
             ++   G+DI
Sbjct: 325 ATDVAARGIDI 335


>gi|171696192|ref|XP_001913020.1| hypothetical protein [Podospora anserina S mat+]
 gi|170948338|emb|CAP60502.1| unnamed protein product [Podospora anserina S mat+]
          Length = 715

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 32/189 (16%)

Query: 43  ADAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPS 102
           A+A+RR   E G+ R     R L+ Q E      + ++  S   SEK+  E+ E+     
Sbjct: 209 AEAIRRGDPETGEERA----RQLLEQHERAKQAAKRKALGS-HWSEKRLEEMKERDW--- 260

Query: 103 VQALARLIQSDNPLL-KNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLL 161
                R+ + +  +  K G I  P RSW  +N  + +        Y    D+P+ I +  
Sbjct: 261 -----RIFKENFGIATKGGAIPNPMRSWEESNLPRRLLDIVHDVGY----DEPSPIQRAS 311

Query: 162 KGIHSREKVQLLLGVTGSGKT--FTMAKVIEAMQRP------------AIVMAPNKILAA 207
             I  + +  + + VTGSGKT  F +  ++   + P            A+++AP + L  
Sbjct: 312 IPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELPPLNDVNKNDGPYALILAPTRELVQ 371

Query: 208 QLYSEFKNF 216
           Q+ +E + F
Sbjct: 372 QIENEARKF 380


>gi|218231735|ref|YP_002369093.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228960551|ref|ZP_04122200.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229111759|ref|ZP_04241307.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock1-15]
 gi|229129563|ref|ZP_04258533.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-Cer4]
 gi|229146871|ref|ZP_04275236.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST24]
 gi|229152486|ref|ZP_04280678.1| ATP-dependent RNA helicase yqfR [Bacillus cereus m1550]
 gi|218159692|gb|ACK59684.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228631094|gb|EEK87731.1| ATP-dependent RNA helicase yqfR [Bacillus cereus m1550]
 gi|228636699|gb|EEK93164.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST24]
 gi|228653880|gb|EEL09748.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-Cer4]
 gi|228671753|gb|EEL27049.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock1-15]
 gi|228799151|gb|EEM46119.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 436

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 66/125 (52%), Gaps = 9/125 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA+ + + L ER ++V  +H ++   +R ++++ +R  +F  +V  +L   G+DI  
Sbjct: 255 TKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI-TKSIQLAIDETTRRRE 709
            G+  +++ +    L      +  +GR AR  +S +   A TI   + + A+D   ++R 
Sbjct: 314 -GISHVINYELPSDL---DFFVHRVGRTARAGHSGI---AVTIYDPANEEALDSLEKQRH 366

Query: 710 KQLEH 714
            + +H
Sbjct: 367 IEFKH 371


>gi|160380700|sp|A6SFW7|DBP2_BOTFB RecName: Full=ATP-dependent RNA helicase dbp2
          Length = 514

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  ++V  ++  
Sbjct: 351 KILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVAS 410

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+     V   D     +  +    I  IGR  R
Sbjct: 411 RGIDVRNITHVFNYD-----YPNNSEDYIHRIGRTGR 442


>gi|187918444|ref|YP_001884007.1| ATP-dependent DNA helicase RecG [Borrelia hermsii DAH]
 gi|119861292|gb|AAX17087.1| ATP-dependent DNA helicase RecG [Borrelia hermsii DAH]
          Length = 687

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 10/98 (10%)

Query: 605 RNIRVRY----MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           +NI V Y    +HS++++  + EI+ D  L + D+LV  +++  G+D P    + +  A+
Sbjct: 501 KNIFVEYSVEMIHSKLESHVKEEIMHDFYLKRIDILVATSVIEVGIDCPNATCMVVEHAE 560

Query: 661 KEGFLRSKTSLIQTIGRAARNV--NSKVILYADTITKS 696
           + G     ++L Q  GR  R    +   +LY + +T+S
Sbjct: 561 RFGL----STLHQIRGRVGRGSLKSFLFLLYKEPLTES 594


>gi|156932881|ref|YP_001436797.1| ATP-dependent RNA helicase SrmB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531135|gb|ABU75961.1| hypothetical protein ESA_00682 [Cronobacter sakazakii ATCC BAA-894]
          Length = 444

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 5/100 (5%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +  R ++ V  +    +L  +L E  I   Y+  E+  ++R E I+ L  G+ +VL+  +
Sbjct: 247 EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQVKRNEAIKRLTDGRVNVLIATD 306

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +   G+DIP+   V   D       R+  + +  IGR  R
Sbjct: 307 VAARGIDIPDVSHVFNYD-----MPRTADTYLHRIGRTGR 341


>gi|154318026|ref|XP_001558332.1| hypothetical protein BC1G_02996 [Botryotinia fuckeliana B05.10]
 gi|150843654|gb|EDN18847.1| hypothetical protein BC1G_02996 [Botryotinia fuckeliana B05.10]
          Length = 535

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LT    E  I  +++  +   +ER   +   R G+F VL+   +  EG DIP    V + 
Sbjct: 176 LTNKFREYGIDSQFVTGDTPKIERSARLDAFRNGEFPVLINCGVFTEGTDIPNIDCVLLA 235

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
              K     S+  LIQ IGR  R
Sbjct: 236 RPTK-----SRNLLIQMIGRGMR 253


>gi|146418822|ref|XP_001485376.1| hypothetical protein PGUG_03105 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 676

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L  + I  +Y+  E    ER  II D + G  +VL  + +  EG DIP    + + 
Sbjct: 286 LCGVLQSQGINAQYVTGETAKHERRAIIEDFKNGTINVLCNVQVFTEGTDIPNIDSLFLA 345

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
              K     S+  L+Q IGR  R
Sbjct: 346 RPTK-----SRPLLVQMIGRGLR 363


>gi|446778|prf||1912301A initiation factor eIF-4A
          Length = 402

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++        ++   T+R  + LT+ +   N  V  MH +++  +R  I++  R
Sbjct: 261 DLYDTLSITQS-----VIFCTTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFR 315

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 316 SGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 353


>gi|297171405|gb|ADI22408.1| transcription-repair coupling factor (superfamily II helicase)
           [uncultured Planctomycetales bacterium HF0500_02G17]
          Length = 1114

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 48/237 (20%), Positives = 96/237 (40%), Gaps = 18/237 (7%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           A+A L + ++ R +  ++ G  GS  T     +  +M+RP +++  +   A     E   
Sbjct: 6   AVAGLARALNKRRRA-VVTGAVGSSTTLLAGVLARSMERPVVLVVAHIDDADDALEELTT 64

Query: 216 F-FPH---NAVEYFVSYYDYYQPEAYVPRTDTYIEK---ESSINEQIDRMRHS-ATRSLL 267
              P     A+E      D           D + E+   + ++    D    + A R  +
Sbjct: 65  LGLPALRLPALEVLPGETDIA--------LDLFAERIAVQRAVMAGGDGSGETGADRVSM 116

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
             +  I+    + + G+ + E   ++    + G+  +  E+   L +  Y R D     G
Sbjct: 117 HPHSVIIAPVQALMQGVPTPERLDKLARTFRPGERHDMTEVTRWLAEAGYTRMDAVEEPG 176

Query: 328 TFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
            F V G  +++F P        R+  FG++IE I+E    T    R ++++++ A S
Sbjct: 177 DFAVRGGILDVFPPGGFGQPPVRLDFFGDEIERINEIDVETMGSDRKMDSVELIAAS 233


>gi|310642741|ref|YP_003947499.1| primosomal protein n [Paenibacillus polymyxa SC2]
 gi|309247691|gb|ADO57258.1| Primosomal protein N [Paenibacillus polymyxa SC2]
          Length = 858

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 11/100 (11%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI--EIIRDLRLGKFDVLVGINLLREGLDI 648
           T+R+ E+L +      IRV  M  +  T +    ++++  R  K DVL+G  ++ +GLD 
Sbjct: 605 TQRVEEELAKLF--PGIRVVRMDVDTTTEKNAHEKLLKQFRDKKADVLLGTQMVAKGLDF 662

Query: 649 PECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           P+  LV ++ AD    L       ++   L Q  GRA R+
Sbjct: 663 PDVTLVGVITADSALNLPDFRAAEKTFQLLTQVAGRAGRH 702


>gi|299782816|gb|ADJ40814.1| Transcription-repair coupling factor [Lactobacillus fermentum CECT
           5716]
          Length = 1113

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R+   L E + E   R+ Y+H ++   E   ++ D   G++DVLV  +++  G+DI   
Sbjct: 775 ERVVAQLAELVPE--ARIGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANV 832

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + + DAD+ G       L Q  GR  R+
Sbjct: 833 NTLFVEDADRLGL----AQLYQIRGRIGRS 858


>gi|291225668|ref|XP_002732809.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 795

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V  K  +E+L   L   +  +  +H ++   ER ++I + +  +  +LV  ++   
Sbjct: 505 VLIFVTKKANSEELASNLKTHDFDLGLLHGDMDQSERNKVITNFKKQQMPILVATDVAAR 564

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDIP    V   D  ++  + + T  I   GRA      K   Y     K +  A D
Sbjct: 565 GLDIPSIKTVVNYDVARD--IDTHTHRIGRTGRAG----IKGTAYTLVTQKDVNFAGD 616


>gi|260495036|ref|ZP_05815165.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_33]
 gi|260197479|gb|EEW94997.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_33]
          Length = 689

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N ++  +H ++K  E+ E++   +  ++D+L+   ++  G+D+P   ++ I +A++ G  
Sbjct: 511 NKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFGL- 569

Query: 666 RSKTSLIQTIGRAARNVN-SKVILYADTITKS 696
              ++L Q  GR  R    S   L +++IT++
Sbjct: 570 ---SALHQLRGRVGRGSKQSYCFLISNSITEN 598


>gi|228923037|ref|ZP_04086330.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836670|gb|EEM82018.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 436

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 66/125 (52%), Gaps = 9/125 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA+ + + L ER ++V  +H ++   +R ++++ +R  +F  +V  +L   G+DI  
Sbjct: 255 TKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI-TKSIQLAIDETTRRRE 709
            G+  +++ +    L      +  +GR AR  +S +   A TI   + + A+D   ++R 
Sbjct: 314 -GISHVINYELPSDL---DFFVHRVGRTARAGHSGI---AVTIYDPANEEALDSLEKQRH 366

Query: 710 KQLEH 714
            + +H
Sbjct: 367 IEFKH 371


>gi|255575815|ref|XP_002528806.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223531759|gb|EEF33579.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 500

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 66/164 (40%), Gaps = 19/164 (11%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   +D+ EYL  + +    +H      ER   I   + GK DVLV  ++  +
Sbjct: 309 VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASK 368

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P+   V   D   E       + +  IGR  R   + +   A T     Q    ET
Sbjct: 369 GLDFPDIQHVINYDMPAE-----IENYVHRIGRTGRCGKTGI---ATTFINKNQ---SET 417

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT-TNIS 747
           T    K L    K  I P      + E+ DP  +ED  T TN S
Sbjct: 418 TLLDLKHLLQEAKQRIPPV-----LAELNDP--MEDGDTITNAS 454


>gi|307153172|ref|YP_003888556.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 7822]
 gi|306983400|gb|ADN15281.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7822]
          Length = 482

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 15/136 (11%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A +LT  L E    V   H  +   +R  +++  R GK  ++V  ++   G
Sbjct: 246 IIFVRTKQTATELTGKLQESGHHVDEYHGNLSQAQRERLVQRFREGKIKLVVATDIAARG 305

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+ +   V   D        +  + I  IGR  R         A     +I L I+   
Sbjct: 306 LDVEDLSHVINFD-----LPDNTETYIHRIGRTGR---------AGKTGTAISL-IEPID 350

Query: 706 RRREKQLEHNKKHNIN 721
           RR  +Q+EH   H ++
Sbjct: 351 RRMLRQIEHRVGHRLD 366


>gi|307155174|ref|YP_003890558.1| excinuclease ABC subunit C [Cyanothece sp. PCC 7822]
 gi|306985402|gb|ADN17283.1| excinuclease ABC, C subunit [Cyanothece sp. PCC 7822]
          Length = 631

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 26/32 (81%)

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + +L+KQM  AA+ LNFE+AA IRD+IK L+S
Sbjct: 212 IHTLQKQMEEAANGLNFEKAAVIRDQIKALES 243


>gi|146312704|ref|YP_001177778.1| ATP-dependent RNA helicase SrmB [Enterobacter sp. 638]
 gi|145319580|gb|ABP61727.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638]
          Length = 442

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L   L    I   Y+  ++  ++R E I+ L  G+ +VLV  ++  
Sbjct: 250 RTIVFVRKRERVHELAAQLRSAGIDNCYLEGDMPQVKRTEGIKRLTEGRVNVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DIPE   V   D       RS  + +  IGR  R
Sbjct: 310 RGIDIPEVSHVINFD-----MPRSGDTYLHRIGRTGR 341


>gi|50954664|ref|YP_061952.1| ATP-dependent DNA helicase RecG [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951146|gb|AAT88847.1| ATP-dependent DNA helicase RecG [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 739

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 33/58 (56%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           + R+  +H  + +  + E +R   +G  D+L+   ++  G+D+P   ++ +LDAD+ G
Sbjct: 555 SARIGVLHGGLPSEAKDETMRSFAVGDIDLLIATTVIEVGVDVPNASVMIVLDADRFG 612


>gi|114330892|ref|YP_747114.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas
           eutropha C91]
 gi|114307906|gb|ABI59149.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
          Length = 455

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR A+ L + L  +  +   MH ++   ER   +  LR G+  +LV  ++   G+DI +
Sbjct: 254 TKRDADSLADNLSAQGHKAAAMHGDMTQRERTRTLTGLRQGRLKILVATDVAARGIDIAD 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAA 679
             +  +++ D   F       I   GRA 
Sbjct: 314 --ITHVINFDLPKFAEDYVHRIGRTGRAG 340


>gi|237753325|ref|ZP_04583805.1| ATP-dependent DNA helicase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375592|gb|EEO25683.1| ATP-dependent DNA helicase [Helicobacter winghamensis ATCC BAA-430]
          Length = 598

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           LKG  +  +V  ++G  G GKT   +A V+ A    +++MAP  +LA QL++E + F P
Sbjct: 240 LKGEFAARRV--IVGDVGCGKTMVILASVLIAYPSKSVLMAPTSVLAKQLFNEAQKFLP 296


>gi|257066532|ref|YP_003152788.1| helicase domain-containing protein [Anaerococcus prevotii DSM
           20548]
 gi|256798412|gb|ACV29067.1| helicase domain protein [Anaerococcus prevotii DSM 20548]
          Length = 663

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 11/121 (9%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLT-----KRMAEDLTEYLYER--NIRVRYMHSEVKTL 619
           ++E +Y++IN   ++G +I +         K   E+L +    R    R+  +H ++K  
Sbjct: 443 KIEILYEKINQTIREGRQIYVVSNNIDSDDKNSLENLYKIYKNRFPRYRIAILHGKMKAK 502

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ++ +I+ D   GK D+L+   ++  G+D+     + I +A+  G     ++L Q  GR  
Sbjct: 503 DKEDILGDFNKGKIDILLATTVIEVGIDVANANTMIIYNANNFGL----STLHQLRGRVG 558

Query: 680 R 680
           R
Sbjct: 559 R 559


>gi|195385378|ref|XP_002051383.1| GJ15436 [Drosophila virilis]
 gi|194147840|gb|EDW63538.1| GJ15436 [Drosophila virilis]
          Length = 403

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++        ++   T+R  + LT+ +   N  V  MH ++   +R  I++  R
Sbjct: 262 DLYDTLSITQS-----VIFCNTRRKVDQLTQEMSNHNFTVSAMHGDMDQRDREVIMKQFR 316

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 317 SGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 354


>gi|115358341|ref|YP_775479.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115283629|gb|ABI89145.1| ATP dependent helicase, Lhr family [Burkholderia ambifaria AMMD]
          Length = 1508

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 8/122 (6%)

Query: 566 TQVED-VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSEVKTLERI 622
           T V D VYD I   A      L+ V T+R AE +  +L ER  +  +   H  +    R+
Sbjct: 265 TDVWDQVYDRIAALAAAHRTTLVFVNTRRTAERMARHLAERLGKDAIAAHHGSLAKEHRL 324

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +  + L+ G+  +LV    L  G+DI +  LV      + G  R     +Q +GR+   V
Sbjct: 325 DAEQRLKRGELKLLVATASLELGIDIGDVDLVC-----QVGSPRGIAPFLQRVGRSGHQV 379

Query: 683 NS 684
             
Sbjct: 380 GG 381


>gi|50421181|ref|XP_459136.1| DEHA2D15048p [Debaryomyces hansenii CBS767]
 gi|74659326|sp|Q6BRN4|IF4A_DEBHA RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|49654803|emb|CAG87307.1| DEHA2D15048p [Debaryomyces hansenii]
          Length = 397

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD I++      + ++   T+   E LT  L   N  V  +H+++   +R  I+ + R
Sbjct: 255 DLYDSISVT-----QAVIFCNTRSKVEFLTTKLKGENFTVSAIHADLPQADRDTIMNEFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   +L+  +LL  G+D+ +  LV   D  A+KE ++
Sbjct: 310 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 347


>gi|34391529|gb|AAN61057.1| RecG [Borrelia hermsii]
          Length = 687

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 10/98 (10%)

Query: 605 RNIRVRY----MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           +NI V Y    +HS++++  + EI+ D  L + D+LV  +++  G+D P    + +  A+
Sbjct: 501 KNIFVEYSVEMIHSKLESHVKEEIMHDFYLKRIDILVATSVIEVGIDCPNATCMVVEHAE 560

Query: 661 KEGFLRSKTSLIQTIGRAARNV--NSKVILYADTITKS 696
           + G     ++L Q  GR  R    +   +LY + +T+S
Sbjct: 561 RFGL----STLHQIRGRVGRGSLKSFLFLLYKEPLTES 594


>gi|255746441|ref|ZP_05420388.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
 gi|262148974|ref|ZP_06028121.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
 gi|255736195|gb|EET91593.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
 gi|262031252|gb|EEY49869.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
          Length = 643

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 309 LDVPR--ITHVYNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQIRMLRTIERVT 364

Query: 706 RR--REKQLEHNKK 717
           R    E QL H  K
Sbjct: 365 RSSMEEIQLPHRDK 378


>gi|315128153|ref|YP_004070156.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315016666|gb|ADT70004.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 432

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V  K+  E L   L +R +  +  H +    ER  +I   + G+ +VL+  ++   G
Sbjct: 259 LIFVNAKKDCEHLASKLEKRGVNAQVFHGDKGQSERTRVIEKFKAGEIEVLIATDIAARG 318

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDI +  +V   +       RS    +  IGR+ R
Sbjct: 319 LDIEKLPVVINFN-----LPRSPADYMHRIGRSGR 348


>gi|312086742|ref|XP_003145197.1| hypothetical protein LOAG_09622 [Loa loa]
 gi|307759639|gb|EFO18873.1| hypothetical protein LOAG_09622 [Loa loa]
          Length = 495

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 41/200 (20%)

Query: 555 VDPPVEIRSARTQV-----------EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
           V+P +E R  + +V           +D+Y  +N+      + ++ V TKR A  +  YL 
Sbjct: 288 VNPFIEQRVLKVEVHERRKVLLDLIQDMY--LNMNDNPLSKTIIFVNTKRFATVIASYLS 345

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD--- 660
            +  +   +H  +    R E I  L+ G   ++V  ++   GLDI   G+  I++ +   
Sbjct: 346 LKGYKAYPIHGNLTAKLRREAIEALQSGDCHIIVSTDVAARGLDIK--GISHIINYEIPK 403

Query: 661 KEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK-- 716
            E FL    S +  +GR  R  NV      +A ++   + L +        K LE NK  
Sbjct: 404 PESFL----SYVHRVGRTGRVGNVGRATTFFAPSVDHGMTLIL-------YKWLEMNKQA 452

Query: 717 --------KHNINPQSVKEK 728
                   KH I+ + ++ K
Sbjct: 453 IPAFLLEAKHRIDTEDLQRK 472


>gi|288921374|ref|ZP_06415654.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
 gi|288347226|gb|EFC81523.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
          Length = 569

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL ++  V T+R A+ + + L  R      +H ++   +R + +R  R GK DVLV
Sbjct: 241 ATDRGLAMVF-VRTRRTADKVADDLARRGFAAAAVHGDLGQGQREQALRAFRGGKVDVLV 299

Query: 638 GINLLREGLDI 648
             ++   G+D+
Sbjct: 300 ATDVAARGIDV 310


>gi|325982473|ref|YP_004294875.1| ATP-dependent DNA helicase RecG [Nitrosomonas sp. AL212]
 gi|325531992|gb|ADZ26713.1| ATP-dependent DNA helicase RecG [Nitrosomonas sp. AL212]
          Length = 679

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 11/121 (9%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           + V  +H  +   E+ EI+   + GK  +LV   ++  G+D+P   L+ I +A++ G   
Sbjct: 504 LNVGLVHGRLSPQEKAEIMLLFKEGKIQLLVATTVIEVGVDVPNASLMVIENAERMGL-- 561

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL-EHNKKHNINPQSV 725
             + L Q  GR  R  ++ + +         Q  + E  R+R + + EH     I  Q +
Sbjct: 562 --SQLHQLRGRVGRGSDASICILL------FQQPLSEIARKRLRIIFEHTDGFEIAHQDM 613

Query: 726 K 726
           +
Sbjct: 614 Q 614


>gi|228954569|ref|ZP_04116594.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229081545|ref|ZP_04214043.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock4-2]
 gi|229180563|ref|ZP_04307905.1| ATP-dependent RNA helicase yqfR [Bacillus cereus 172560W]
 gi|229192495|ref|ZP_04319458.1| ATP-dependent RNA helicase yqfR [Bacillus cereus ATCC 10876]
 gi|228591072|gb|EEK48928.1| ATP-dependent RNA helicase yqfR [Bacillus cereus ATCC 10876]
 gi|228602987|gb|EEK60466.1| ATP-dependent RNA helicase yqfR [Bacillus cereus 172560W]
 gi|228701750|gb|EEL54238.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock4-2]
 gi|228805226|gb|EEM51820.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 436

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 66/125 (52%), Gaps = 9/125 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA+ + + L ER ++V  +H ++   +R ++++ +R  +F  +V  +L   G+DI  
Sbjct: 255 TKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI-TKSIQLAIDETTRRRE 709
            G+  +++ +    L      +  +GR AR  +S +   A TI   + + A+D   ++R 
Sbjct: 314 -GISHVINYELPSDL---DFFVHRVGRTARAGHSGI---AVTIYDPANEEALDSLEKQRH 366

Query: 710 KQLEH 714
            + +H
Sbjct: 367 IEFKH 371


>gi|188532351|ref|YP_001906148.1| ATP-dependent RNA helicase RhlB [Erwinia tasmaniensis Et1/99]
 gi|226739538|sp|B2VG58|RHLB_ERWT9 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|188027393|emb|CAO95240.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 430

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   ED+  +L     RV  +  +V   +R+ I+ D   G  D+LV  ++  
Sbjct: 258 RTIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVATDVAA 317

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNS 684
            GL IP    V   D   D+E ++      I   GRA  N +S
Sbjct: 318 RGLHIPAVTHVFNYDLPDDREDYVHR----IGRTGRAGANGHS 356


>gi|163790813|ref|ZP_02185238.1| ATP-dependent DNA helicase RecG [Carnobacterium sp. AT7]
 gi|159873881|gb|EDP67960.1| ATP-dependent DNA helicase RecG [Carnobacterium sp. AT7]
          Length = 682

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 6/102 (5%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E LT Y  +R  +V  +H ++K+ E+   + + +  K  VLV   ++  G+++P    + 
Sbjct: 493 EKLTAYYGDR-FQVGLLHGKMKSSEKESTMENFKEKKLQVLVSTTVIEVGVNVPNATTMI 551

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           I DAD+ G     + L Q  GR  R +  S  IL A+  T++
Sbjct: 552 IYDADRFGL----SQLHQLRGRVGRGDKESYCILVANPKTEN 589



 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 3/98 (3%)

Query: 560 EIRSARTQVEDV--YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T V  +  Y   N+  Q  L +   +L ++  E L+E      +R+  +    K
Sbjct: 286 DVGSGKTIVAAIALYAATNVGVQSALMVPTEILAEQHMESLSELFNPLEVRIALLTGSTK 345

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLV 654
           T +R  I+  L  G+ DVL+G + L+++ +   + GLV
Sbjct: 346 TKDRRLILEQLANGELDVLIGTHALIQQDVYFSKLGLV 383


>gi|260427548|ref|ZP_05781527.1| transcription-repair coupling factor [Citreicella sp. SE45]
 gi|260422040|gb|EEX15291.1| transcription-repair coupling factor [Citreicella sp. SE45]
          Length = 1160

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 16/159 (10%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQ------QGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PPV+  S RT V + +D + +         +G +    V       ++ E+L E+   V 
Sbjct: 784 PPVDRLSIRTYVSE-FDPVTIREALLREHYRGGQSFYVVPRISDLPEIEEFLREQVPEVS 842

Query: 611 YM--HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           Y+  H ++   E  E +     GK+DVL+   ++  GLDIP    + +  AD  G     
Sbjct: 843 YVVAHGQMAAGELDEKMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRADMFGL---- 898

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
           + L Q  GR  R   SK   YA   TK      D   +R
Sbjct: 899 SQLYQIRGRVGR---SKTRAYAYMTTKPRAKLTDTAEKR 934


>gi|227548399|ref|ZP_03978448.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079443|gb|EEI17406.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 683

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 5/149 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R      ++ ++   +R   +  LR G+ D+LV  ++   
Sbjct: 346 MIVFVRTKHETEELAEKLRARGFSAAAINGDIAQQQRERTVDQLRDGRLDILVATDVAAR 405

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+     V   + D    + S    I   GRA R    + IL+     + +  +I+  
Sbjct: 406 GLDVERISHV--FNYDIPNDIESYVHRIGRTGRAGR--TGEAILFVTPRERRMLRSIERV 461

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T    +++E      +N +S K K M+ I
Sbjct: 462 TNATIEEMELPTVDEVN-ESRKLKFMDSI 489


>gi|148984550|ref|ZP_01817838.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP3-BS71]
 gi|147923327|gb|EDK74441.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP3-BS71]
 gi|301799155|emb|CBW31667.1| putative putative transcription-repair coupling factor
           [Streptococcus pneumoniae OXC141]
          Length = 1169

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 129/309 (41%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  +++      A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTKVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|297579675|ref|ZP_06941602.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
 gi|297535321|gb|EFH74155.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
          Length = 464

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVYDE---------INLAAQQGLR-ILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y           + L  +   + +L+ + TK  A 
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQVLVFMRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L  YL E+ +    +H       R   + D + G+  +LV  ++   G+DIP+
Sbjct: 258 RLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQ 311


>gi|71000385|ref|XP_754887.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus Af293]
 gi|66852524|gb|EAL92849.1| DEAD/DEAH box RNA helicase, putative [Aspergillus fumigatus Af293]
 gi|159127900|gb|EDP53015.1| DEAD/DEAH box RNA helicase, putative [Aspergillus fumigatus A1163]
          Length = 587

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 1/104 (0%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A    R L+ V TK  A+ L ++LY   +    +HS+    ER + +R  R  +  ++
Sbjct: 391 LLAMPPSRTLIFVNTKIQADFLDDFLYNMGLPSTSIHSDRTQREREDALRSFRSARCPIM 450

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V   +   GLDI     V   D          T  I  IGR AR
Sbjct: 451 VATGVSARGLDIKNVMHVVNFDLPSAAH-GGITEYIHRIGRTAR 493


>gi|313247629|emb|CBY15795.1| unnamed protein product [Oikopleura dioica]
          Length = 595

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR A++LT  +         +H +    ER  +++  R G+  +L+  ++   GLDI +
Sbjct: 363 TKRRADELTYKMKRLRWEAAAIHGDKSQSERDHVLKRFRSGRIPILIATDVASRGLDIND 422

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
              V   D     F       +  IGR AR  ++K   Y
Sbjct: 423 VKFVVNFD-----FPGQIEDYVHRIGRTARGKDAKGTSY 456


>gi|228941450|ref|ZP_04104001.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974381|ref|ZP_04134950.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980974|ref|ZP_04141277.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis Bt407]
 gi|228778765|gb|EEM27029.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis Bt407]
 gi|228785431|gb|EEM33441.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818231|gb|EEM64305.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 436

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 66/125 (52%), Gaps = 9/125 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA+ + + L ER ++V  +H ++   +R ++++ +R  +F  +V  +L   G+DI  
Sbjct: 255 TKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI-TKSIQLAIDETTRRRE 709
            G+  +++ +    L      +  +GR AR  +S +   A TI   + + A+D   ++R 
Sbjct: 314 -GISHVINYELPSDL---DFFVHRVGRTARAGHSGI---AVTIYDPANEEALDSLEKQRH 366

Query: 710 KQLEH 714
            + +H
Sbjct: 367 IEFKH 371


>gi|225563316|gb|EEH11595.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 653

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLVA 655
           LTE      +  RY+ S+     R + +   R  ++ VLV   L  EG DIP  +C L+A
Sbjct: 310 LTEAFRRFGVDARYITSQTSKDIRTDELEAFRNQEYPVLVNCGLFTEGTDIPNIDCVLLA 369

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR 680
                     RSK  LIQ IGR  R
Sbjct: 370 RP-------TRSKNLLIQMIGRGLR 387


>gi|168484302|ref|ZP_02709254.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042444|gb|EDT50490.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC1873-00]
 gi|332198870|gb|EGJ12952.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA47368]
          Length = 1169

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 129/309 (41%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  +++      A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302



 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|167915130|ref|ZP_02502221.1| putative ATP-dependent helicase lhr [Burkholderia pseudomallei 112]
          Length = 588

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSE 615
           P+E   A    E +YD I   A      L+ V T+RMAE    +L +R     +   H  
Sbjct: 259 PLEPVMANDVWERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAHHGS 318

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +Q +
Sbjct: 319 LAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFLQRV 373

Query: 676 GRAARNVNS 684
           GR+  ++  
Sbjct: 374 GRSGHHIGG 382


>gi|157144489|ref|YP_001451808.1| ATP-dependent RNA helicase SrmB [Citrobacter koseri ATCC BAA-895]
 gi|157081694|gb|ABV11372.1| hypothetical protein CKO_00206 [Citrobacter koseri ATCC BAA-895]
          Length = 445

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +VL
Sbjct: 243 LKQPEATRSIVFVRKRERVHELAGWLREAGINNCYLEGEMVQGKRNEAIKRLTDGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  ++   G+DIP+   V   D       RS  + +  IGR  R
Sbjct: 303 IATDVAARGIDIPDVSHVFNFD-----MPRSSDTYLHRIGRTGR 341


>gi|38569505|ref|NP_008941.2| probable ATP-dependent RNA helicase DDX52 [Homo sapiens]
 gi|296439375|sp|Q9Y2R4|DDX52_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX52; AltName:
           Full=ATP-dependent RNA helicase ROK1-like; AltName:
           Full=DEAD box protein 52
          Length = 599

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +   A++L   L    I V  +H+E    +R   +   R GK  VL+   LL  
Sbjct: 415 VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLAR 474

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILY 689
           G+D     LV   D     F  S    I  IGR  R  N  K I +
Sbjct: 475 GIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITF 515


>gi|331652166|ref|ZP_08353185.1| transcription-repair coupling factor [Escherichia coli M718]
 gi|331050444|gb|EGI22502.1| transcription-repair coupling factor [Escherichia coli M718]
          Length = 1164

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  +  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVNQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 247 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.4 bits (85), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|327485805|gb|AEA80211.1| Cold-shock DEAD-box protein A [Vibrio cholerae LMA3894-4]
          Length = 644

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 309 LDVPR--ITHVYNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQIRMLRTIERVT 364

Query: 706 RR--REKQLEHNKK 717
           R    E QL H  K
Sbjct: 365 RSSMEEIQLPHRDK 378


>gi|326330642|ref|ZP_08196946.1| ATP-dependent DNA helicase RecG [Nocardioidaceae bacterium Broad-1]
 gi|325951483|gb|EGD43519.1| ATP-dependent DNA helicase RecG [Nocardioidaceae bacterium Broad-1]
          Length = 754

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           R + V  +H ++   E+   +     G  DVL+   ++  G+D+P    + ILDAD+ G 
Sbjct: 569 RGLNVAKLHGKLPAEEKERTMSAFAAGDIDVLIATTVIEVGVDVPNATTMVILDADRFGV 628

Query: 665 LRSKTSLIQTIGRAARN 681
               + L Q  GR  R 
Sbjct: 629 ----SQLHQLRGRVGRG 641


>gi|323490564|ref|ZP_08095770.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
 gi|323395830|gb|EGA88670.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
          Length = 506

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L + L  R      +H ++   +R+ +++  + GK D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELAKALNIRGYLAEGIHGDLSQAKRMSVLKQFKAGKIDILVATDVAARGLDISG 308

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              V   D  ++       S +  IGR  R
Sbjct: 309 VSHVYNFDIPQD-----PESYVHRIGRTGR 333


>gi|310644343|ref|YP_003949102.1| helicase domain protein [Paenibacillus polymyxa SC2]
 gi|309249294|gb|ADO58861.1| Helicase domain protein [Paenibacillus polymyxa SC2]
          Length = 706

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 65/162 (40%), Gaps = 16/162 (9%)

Query: 558 PVEIRSARTQVEDVYDEINLAA----------QQGLRILLTVLTKRMAEDLTEYLYERNI 607
           PV IR     V     +  L A          Q+G ++ L V      + L E L  +  
Sbjct: 532 PVPIRLGTASVHHWLQKGQLPASFIQHLYISIQRGAQVFLFVTRISHIQGLVELLIRQLP 591

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            +    +  +  ER   +R  R  +  VLV   +L  G+ +P    V ILDAD   F   
Sbjct: 592 DIPIAGTSSQDEERTAKVRLFRGTEIRVLVTTTILERGVTVPRSD-VYILDADSSLF--D 648

Query: 668 KTSLIQTIGRAARNVN---SKVILYADTITKSIQLAIDETTR 706
           + SL+Q  GRA R+ +     VI  +   T   + AI +  R
Sbjct: 649 EASLVQMAGRAGRSKDDPCGSVIFISPQWTSGQKRAIKQIKR 690


>gi|312069940|ref|XP_003137916.1| type III restriction enzyme [Loa loa]
 gi|307766923|gb|EFO26157.1| type III restriction enzyme [Loa loa]
          Length = 1032

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 34/152 (22%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNI------RVRYMHSEVKTL--------ERIEIIRDLR 629
           R ++ V T+R+A+ L+ +L    I       V ++ S  ++         E+  +I +  
Sbjct: 682 RTIIFVTTRRLAQYLSHHLNTVKIVDGTNRAVGFVTSSNRSSALSGQTAEEQRTVIENFN 741

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVIL 688
            G   VLV  ++  EGLDI  C L  I+  +  G   S+ SLIQ  GRA AR+       
Sbjct: 742 QGTLKVLVATSVAEEGLDISACNL--IIKYNNTG---SERSLIQRRGRARARH------- 789

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
                ++SI LA+D +    EK+LE+ +K ++
Sbjct: 790 -----SRSILLALDGSI--EEKELENIQKEHL 814


>gi|294789082|ref|ZP_06754321.1| excinuclease ABC subunit C [Simonsiella muelleri ATCC 29453]
 gi|294482823|gb|EFG30511.1| excinuclease ABC subunit C [Simonsiella muelleri ATCC 29453]
          Length = 613

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 24/30 (80%)

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           LK L KQM  AAD+L+FE AA++RD+I+ L
Sbjct: 208 LKDLEKQMFQAADDLDFETAAKLRDQIQAL 237


>gi|237743344|ref|ZP_04573825.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 7_1]
 gi|229433123|gb|EEO43335.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 7_1]
          Length = 689

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N ++  +H ++K  E+ E++   +  ++D+L+   ++  G+D+P   ++ I +A++ G  
Sbjct: 511 NKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFGL- 569

Query: 666 RSKTSLIQTIGRAARNVN-SKVILYADTITKS 696
              ++L Q  GR  R    S   L +++IT++
Sbjct: 570 ---SALHQLRGRVGRGSKQSYCFLISNSITEN 598


>gi|294815344|ref|ZP_06773987.1| ATP-dependent DNA helicase RecG [Streptomyces clavuligerus ATCC
           27064]
 gi|326443698|ref|ZP_08218432.1| ATP-dependent DNA helicase RecG [Streptomyces clavuligerus ATCC
           27064]
 gi|294327943|gb|EFG09586.1| ATP-dependent DNA helicase RecG [Streptomyces clavuligerus ATCC
           27064]
          Length = 784

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  +   ++  ++R    G+ DVLV   ++  G+++P    + I+DAD+ G  
Sbjct: 600 GLRIGVLHGRMPPEDKDAVMRRFTAGEVDVLVATTVIEVGVNVPNATAMVIMDADRFGV- 658

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R     + L
Sbjct: 659 ---SQLHQLRGRVGRGSAPGLCL 678


>gi|212539558|ref|XP_002149934.1| DEAD box helicase Mph1, putative [Penicillium marneffei ATCC 18224]
 gi|210067233|gb|EEA21325.1| DEAD box helicase Mph1, putative [Penicillium marneffei ATCC 18224]
          Length = 1129

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 22/184 (11%)

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++ +I   + G ++ +V  ++  EGLDI E  L+   D+       S   ++Q +GR  R
Sbjct: 714 QLSVIEKFKNGTYNTIVATSIGEEGLDIGEVDLIVCYDSSA-----SPIRMLQRMGRTGR 768

Query: 681 N--VNSKVILYADTITKSIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIME 731
               N K++L      +S   A D   + +E        +   +K   I P+ V+  + +
Sbjct: 769 KRAGNIKLLLMQGKEEESYIKAKDNYEKMQELIASGTRFEFHDDKSARILPKDVRPTVDK 828

Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            +  I LE++           L   KKKG+A  +  +K          F +A+RI +E  
Sbjct: 829 RVVEIPLENSQA--------DLPEPKKKGRAPKRPPKKFHMPDGVETGFTKASRIGEEGG 880

Query: 792 RLKS 795
            ++S
Sbjct: 881 DIRS 884


>gi|220907128|ref|YP_002482439.1| type III restriction protein res subunit [Cyanothece sp. PCC 7425]
 gi|219863739|gb|ACL44078.1| type III restriction protein res subunit [Cyanothece sp. PCC 7425]
          Length = 494

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 19/148 (12%)

Query: 575 INLAAQQGLRILLTVLTKRMAE--------DLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           I    +  LR+L+ +L +   E        + T Y   + + +  +  +    ER  I+ 
Sbjct: 316 IAFGTEAKLRVLVDLLAEHYPEQTLIFTDDNATVYRISQELLIPAITHQTPVKERHAILS 375

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---NVN 683
             R G++  +V   +L EG+D+PE  +  +L         S   LIQ +GR  R   +  
Sbjct: 376 RFRTGEYKTIVASRVLNEGVDVPEARVAIVLSGTG-----SPRELIQRLGRVLRKGKDSQ 430

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQ 711
            + +LY      + +   + T +RR+ Q
Sbjct: 431 KRAMLYEIVAENTSE---ENTVKRRQPQ 455


>gi|254248593|ref|ZP_04941913.1| Helicase [Burkholderia cenocepacia PC184]
 gi|124875094|gb|EAY65084.1| Helicase [Burkholderia cenocepacia PC184]
          Length = 1518

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSE 615
           P+E   A    E VYD I   A      L+ V T+R AE +  +L +R  +  +   H  
Sbjct: 275 PLEPVMATDVWEQVYDRIAGLAAAHRTTLVFVNTRRTAERMARHLADRLGKDAIAAHHGS 334

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ G+  +LV    L  G+DI +  LV      + G  R     +Q +
Sbjct: 335 LAKEHRFDAEQRLKRGELKLLVATASLELGIDIGDVDLVC-----QVGSPRGIAPFLQRV 389

Query: 676 GRAARNVNS 684
           GR+  +V  
Sbjct: 390 GRSGHHVGG 398


>gi|110737546|dbj|BAF00715.1| DRH1 DEAD box protein - like [Arabidopsis thaliana]
          Length = 450

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I  + + G +I++   TKRM + L   L  R      +H +    ER +++   R G+
Sbjct: 202 EQILRSQEPGSKIIIFCSTKRMCDQLARNL-TRTFGAAAIHGDKSQAERDDVLNQFRSGR 260

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             VLV  ++   GLD+ +  +V   D     F       +  IGR  R
Sbjct: 261 TPVLVATDVAARGLDVKDIRVVVNYD-----FPNGVEDYVHRIGRTGR 303


>gi|19705270|ref|NP_602765.1| DNA/RNA helicase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19713231|gb|AAL94064.1| DNA/RNA helicase (DEAD/DEAH BOX family) [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 942

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 13/123 (10%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED--LTEYLYERNIRVRYMHSEVKTLE 620
           ++ T+V+ + +     +  G R+   +   ++ E   L E   E+ ++   + SE    E
Sbjct: 414 TSDTRVKHILENSKYYSYSGERLSCLIFVSKVEEAKILVEKFLEQGVKAIALSSENSDNE 473

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS---LIQTIGR 677
           R E IR L  G+ + +  +++  EG+DIP C    IL       LR  TS    IQ +GR
Sbjct: 474 REEAIRKLEQGEIEYITSVDIFNEGVDIP-CVNQVIL-------LRPTTSAIVYIQQLGR 525

Query: 678 AAR 680
             R
Sbjct: 526 GLR 528


>gi|77360776|ref|YP_340351.1| transcription-repair ATP-dependent coupling factor
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76875687|emb|CAI86908.1| transcription-repair ATP-dependent coupling factor
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 1157

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R+A++++E++ E +  V   H +++  E  +I+ D    K++VLV   ++  G+DIP  
Sbjct: 832 ERVAQEISEWVPEAS--VTSAHGQMREQELEQIMADFYHQKYNVLVCTTIIETGIDIPTA 889

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + +  ADK G       L Q  GR  R+
Sbjct: 890 NTIIMDRADKLGL----AQLHQLRGRVGRS 915


>gi|16078634|ref|NP_389453.1| primosome assembly protein PriA [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221309446|ref|ZP_03591293.1| primosome assembly protein PriA [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221313771|ref|ZP_03595576.1| primosome assembly protein PriA [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221318695|ref|ZP_03599989.1| primosome assembly protein PriA [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221322966|ref|ZP_03604260.1| primosome assembly protein PriA [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|321315337|ref|YP_004207624.1| primosome assembly protein PriA [Bacillus subtilis BSn5]
 gi|3183549|sp|P94461|PRIA_BACSU RecName: Full=Primosomal protein N'; AltName: Full=ATP-dependent
           helicase priA; AltName: Full=Replication factor Y
 gi|2337800|emb|CAA74261.1| putative PriA protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633943|emb|CAB13444.1| primosomal replication factor Y (primosomal protein N') [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|320021611|gb|ADV96597.1| primosome assembly protein PriA [Bacillus subtilis BSn5]
          Length = 805

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 15/102 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+R+ E+LT+ L       R +  +V T  R     +++     GK D+L+G  ++ +GL
Sbjct: 565 TQRVEEELTKVL----PSARVIRMDVDTTSRKGAHEKLLSAFGEGKADILLGTQMIAKGL 620

Query: 647 DIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           D P   LV +L AD    +       ++   L Q  GRA R+
Sbjct: 621 DFPNVTLVGVLSADTTLHIPDFRSAEKTFQLLTQVSGRAGRH 662



 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 152 DQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAA 207
           +Q AA   + + + S E KV LL GVTGSGKT    + IE   A  + AIV+ P   L  
Sbjct: 271 EQRAAFEPIRETLDSDEHKVFLLHGVTGSGKTEIYLQSIEKVLAKGKEAIVLVPEISLTP 330

Query: 208 QLYSEFKNFF 217
           Q+ + FK  F
Sbjct: 331 QMVNRFKGRF 340


>gi|116672575|ref|YP_833508.1| adenylosuccinate lyase [Arthrobacter sp. FB24]
 gi|116612684|gb|ABK05408.1| Adenylosuccinate lyase [Arthrobacter sp. FB24]
          Length = 480

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 574 EINLAAQQGLRILL--TVLTKRMAEDLTEYLYERNIRVRYMHS------EVKTLERIEII 625
           E NL    GL  +L  T++T R   DLT+   +RNI V + HS       VK LER+++ 
Sbjct: 329 EANLEISSGLLDVLGSTLVTSRWQRDLTDSSSQRNIGVAFGHSLLAISNVVKGLERLDVA 388

Query: 626 RDLRLGKFD 634
            D+  G  D
Sbjct: 389 EDVLAGDLD 397


>gi|332847931|ref|XP_001173155.2| PREDICTED: probable ATP-dependent RNA helicase DDX52 isoform 2 [Pan
           troglodytes]
          Length = 599

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +   A++L   L    I V  +H+E    +R   +   R GK  VL+   LL  
Sbjct: 415 VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLAR 474

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILY 689
           G+D     LV   D     F  S    I  IGR  R  N  K I +
Sbjct: 475 GIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITF 515


>gi|332704376|ref|ZP_08424464.1| primosomal protein N' [Desulfovibrio africanus str. Walvis Bay]
 gi|332554525|gb|EGJ51569.1| primosomal protein N' [Desulfovibrio africanus str. Walvis Bay]
          Length = 780

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 152 DQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAA 207
           +Q AA+A +   +  R  + +LL G+TGSGKT     MA+   +  R AI++AP   LA 
Sbjct: 248 EQTAALADMTAAMGQRNGQARLLYGITGSGKTMVYLRMAEECLSSGRSAILLAPEVALAC 307

Query: 208 QLYSEFKNFFP 218
            L+ + +   P
Sbjct: 308 SLHRQARERLP 318



 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 8/99 (8%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E L   L      +R      +  ER+E I+R+   GK  VLVG  +L +G   P
Sbjct: 540 TEQLEEVLAHVLPPETAILRMDRDSTRRQERLEEILREFSSGKAQVLVGTQMLSKGHHFP 599

Query: 650 ECGLVAILDA-------DKEGFLRSKTSLIQTIGRAARN 681
              LV + DA       D     R+   L+Q  GRA R 
Sbjct: 600 GVTLVVVADADLGLNMPDYRAAERTFQLLVQVSGRAGRG 638


>gi|332288967|ref|YP_004419819.1| ATP-dependent DNA helicase RecG [Gallibacterium anatis UMN179]
 gi|330431863|gb|AEC16922.1| ATP-dependent DNA helicase RecG [Gallibacterium anatis UMN179]
          Length = 694

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           +++  +H  +K  E+ +++   + G+ DVLV   ++  G+D+P   L+ I +A++ G   
Sbjct: 519 LKIGLVHGRMKPQEKQDVMAIFKAGEIDVLVATTVIEVGVDVPNASLMIIENAERLGL-- 576

Query: 667 SKTSLIQTIGRAARN 681
             + L Q  GR  R 
Sbjct: 577 --SQLHQLRGRVGRG 589


>gi|294618609|ref|ZP_06698148.1| primosomal protein N' [Enterococcus faecium E1679]
 gi|291595128|gb|EFF26466.1| primosomal protein N' [Enterococcus faecium E1679]
          Length = 802

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 15/101 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+++ E+L E LY +    R +  +V T  R     +I++     + D+L+G  ++ +GL
Sbjct: 563 TQKVEEELRE-LYPQ---ARILRMDVDTTRRKGAHEQILQKFGAKEADILLGTQMIAKGL 618

Query: 647 DIPECGLVAILDADKE----GFLRSKTS---LIQTIGRAAR 680
           D PE  LV +L+AD       F  S+ +   L Q  GRA R
Sbjct: 619 DFPEVTLVGVLNADTSLNLPDFRSSEHTFQLLTQVSGRAGR 659



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLL-KGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPA 196
           F   T    + +Q  A+ Q++  G   +++V LL G+TGSGKT    + I  +    + A
Sbjct: 257 FDQTTALELNAEQKNAVEQIITAGQQQKDQVFLLEGITGSGKTEVYLQAIADVLSENKTA 316

Query: 197 IVMAPNKILAAQLYSEFKNFF 217
           I++ P   L  Q+   FK  F
Sbjct: 317 IMLVPEIALTPQMVERFKGRF 337


>gi|257886040|ref|ZP_05665693.1| primosomal protein N [Enterococcus faecium 1,231,501]
 gi|257821896|gb|EEV49026.1| primosomal protein N [Enterococcus faecium 1,231,501]
          Length = 802

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 15/101 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+++ E+L E LY +    R +  +V T  R     +I++     + D+L+G  ++ +GL
Sbjct: 563 TQKVEEELRE-LYPQ---ARILRMDVDTTRRKGAHEQILQKFGAKEADILLGTQMIAKGL 618

Query: 647 DIPECGLVAILDADKE----GFLRSKTS---LIQTIGRAAR 680
           D PE  LV +L+AD       F  S+ +   L Q  GRA R
Sbjct: 619 DFPEVTLVGVLNADTSLNLPDFRSSEHTFQLLTQVSGRAGR 659



 Score = 37.4 bits (85), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLL-KGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPA 196
           F   T    + +Q  A+ Q++  G   +++V LL G+TGSGKT    + I  +    + A
Sbjct: 257 FDQTTALELNAEQKNAVEQIITAGQQQKDQVFLLEGITGSGKTEVYLQAIADVLSENKTA 316

Query: 197 IVMAPNKILAAQLYSEFKNFF 217
           I++ P   L  Q+   FK  F
Sbjct: 317 IMLVPEIALTPQMVERFKGRF 337


>gi|254577069|ref|XP_002494521.1| ZYRO0A03476p [Zygosaccharomyces rouxii]
 gi|238937410|emb|CAR25588.1| ZYRO0A03476p [Zygosaccharomyces rouxii]
          Length = 399

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   T++  + L++ L + N  V  MH ++K  +R +++ D R
Sbjct: 258 DLYDSLTIT-----QCVIFCNTRKKVDWLSKKLIQSNFAVVSMHGDMKQEDRDKVMNDFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV  ++ D    +    + I  IGR+ R
Sbjct: 313 TGHSRVLISTDVWARGIDVQQISLV--INYDMPEIME---NYIHRIGRSGR 358


>gi|224501856|ref|ZP_03670163.1| helicase [Listeria monocytogenes FSL R2-561]
 gi|313633568|gb|EFS00360.1| 51.5 kDa protein [Listeria seeligeri FSL N1-067]
          Length = 380

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 37/76 (48%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G + +L   +   ++ +     +  I   ++  +    ER  II+  R G+  VL  ++L
Sbjct: 154 GQQAILYASSLYQSQKMAASFEQVGITAAHIDGKTPKAERDHIIQQFRNGEIKVLCNLDL 213

Query: 642 LREGLDIPECGLVAIL 657
           + EG D+P+C  V +L
Sbjct: 214 IGEGFDVPDCSTVIML 229


>gi|255559124|ref|XP_002520584.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223540244|gb|EEF41817.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 254

 Score = 39.3 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV---AILDADK 661
           RN R   +H ++   +R   +   R G F++LV  ++   GLD+P   LV   A+ +  +
Sbjct: 3   RNFRCEALHGDISQSQRERTLSGFRSGSFNILVATDVAARGLDVPNVDLVIHYALPNCSE 62

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
               RS  +     GRA +   + +++Y    T+ +++
Sbjct: 63  TFVHRSGRT-----GRAGKK-GTAILVYTPDQTRQVKI 94


>gi|213402959|ref|XP_002172252.1| ATP-dependent RNA helicase rok1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000299|gb|EEB05959.1| ATP-dependent RNA helicase rok1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 519

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           TE +++  I V  +H E+  ++R E++   R G+  VL+  +LL  G+D     LV   D
Sbjct: 337 TELMFD-GIHVAAIHGELPQMKRDEVMARFRKGEVWVLIATDLLARGIDFNGVKLVINYD 395

Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680
                F +S  S I  IGR  R
Sbjct: 396 -----FPQSVHSYIHRIGRTGR 412


>gi|167854894|ref|ZP_02477670.1| ATP-dependent DNA helicase recG [Haemophilus parasuis 29755]
 gi|167853961|gb|EDS25199.1| ATP-dependent DNA helicase recG [Haemophilus parasuis 29755]
          Length = 693

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL   L   ++R+  +H  +K  E+  I+ + +    D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLQRAL--PDLRIGLVHGRMKPQEKQAIMAEFKAADIDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I ++++ G       L Q  GR  R   +   V++Y   + K
Sbjct: 567 IENSERLGL----AQLHQLRGRVGRGATASHCVLMYKAPLGK 604


>gi|170593931|ref|XP_001901717.1| DEAD/DEAH box helicase family protein [Brugia malayi]
 gi|158590661|gb|EDP29276.1| DEAD/DEAH box helicase family protein [Brugia malayi]
          Length = 534

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 20/161 (12%)

Query: 555 VDPPVEIRSARTQVEDVYDEI-NLAAQQGLR--------ILLTVLTKRMAEDLTEYLYER 605
           V+P +E R  + +V +  D + NL  +  L+        I++ V TKR A  +  YL  +
Sbjct: 328 VNPFIEQRVLKVEVHEKRDALLNLMQEIYLKRDDNSPPKIIIFVNTKRFASVIACYLSLK 387

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD---KE 662
             +   +H+ +    R E I  L+     +LV  ++   GLDI   G+  I++ +    E
Sbjct: 388 GYKAYPIHANLTAKLRREAIEALQSSDCHILVSTDVAARGLDIK--GISHIINYEIPRPE 445

Query: 663 GFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSIQLAI 701
            FL    S +  +GR  R  NV      +A ++   + L +
Sbjct: 446 SFL----SYVHRVGRTGRVGNVGRATTFFAQSVDHGMALEL 482


>gi|148993579|ref|ZP_01823050.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP9-BS68]
 gi|168489341|ref|ZP_02713540.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP195]
 gi|147927800|gb|EDK78822.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572243|gb|EDT92771.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP195]
 gi|332071709|gb|EGI82202.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA17570]
          Length = 1174

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 129/309 (41%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  +++      A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|94496770|ref|ZP_01303345.1| putative DNA repair helicase [Sphingomonas sp. SKA58]
 gi|94423783|gb|EAT08809.1| putative DNA repair helicase [Sphingomonas sp. SKA58]
          Length = 726

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
              R  E +++ L +   R+    S     ER  I+   ++G  D +V I  L EG+D+P
Sbjct: 572 FAGRQIEVVSQILDQMGWRISRFTSREPRKERASILNSFKIGLIDGMVAIKCLDEGIDVP 631

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            C    IL +      R     IQ  GR  R    K
Sbjct: 632 ACSTAYILAS-----ARDPRQFIQRRGRILRRSPGK 662


>gi|91772311|ref|YP_565003.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
           6242]
 gi|91711326|gb|ABE51253.1| DEAD-box RNA helicase [Methanococcoides burtonii DSM 6242]
          Length = 463

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+   TK  A  +TE L + NI    +H       R + +++ + G+  VLV  ++   
Sbjct: 247 VLVFTRTKHRANKVTEMLNKSNINAGAIHGSKSQTHRTKTLQNFKSGQLRVLVATDIAAR 306

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+DI +   V   D           S +  IGR AR
Sbjct: 307 GIDIEDISHVINYD-----LPNIPESYVHRIGRTAR 337


>gi|15899955|ref|NP_344559.1| transcription-repair coupling factor [Streptococcus pneumoniae
           TIGR4]
 gi|111658624|ref|ZP_01409274.1| hypothetical protein SpneT_02000214 [Streptococcus pneumoniae
           TIGR4]
 gi|14971470|gb|AAK74199.1| transcription-repair coupling factor [Streptococcus pneumoniae
           TIGR4]
          Length = 1169

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 129/309 (41%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  +++      A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|71030512|ref|XP_764898.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68351854|gb|EAN32615.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 488

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 41/79 (51%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ + TK+  + ++  L +   +V  +HS +K  +R + +   R G  ++LV  +L+  G
Sbjct: 335 IIFICTKKRCQLVSLTLDQLEFKVTCIHSLMKQSKRTDSLSKFRSGYSNLLVATDLVSRG 394

Query: 646 LDIPECGLVAILDADKEGF 664
           +D+PE   V  LD     F
Sbjct: 395 IDVPEVSFVINLDFPGTAF 413


>gi|307109321|gb|EFN57559.1| hypothetical protein CHLNCDRAFT_143199 [Chlorella variabilis]
          Length = 2232

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 15/103 (14%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+  I+R  R G+ ++LV  ++  EG+D+  C LV   D        +  S IQ+ GR A
Sbjct: 855 EQSRILRRFRAGELNLLVSTSVAEEGIDVKSCQLVVRYD-----LPNNAQSYIQSRGR-A 908

Query: 680 RNVNSKVILYADTITKSIQLAIDETTR--RREKQLEHNKKHNI 720
           R +NS++++        +Q  ++E  R  R   + EH  +  +
Sbjct: 909 RMINSELLMM-------VQEGVEEEHRMVRHMVEYEHQLRQEV 944


>gi|297626613|ref|YP_003688376.1| ATP-dependent DNA helicase RecG [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922378|emb|CBL56950.1| ATP-dependent DNA helicase RecG [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 735

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           + +R+  +H  +   ++   +     G+ DVLV   ++  G+D+P    + +LDAD+ G 
Sbjct: 551 KGLRLGLLHGRMSGADKESAMAAFAAGQTDVLVTTTVIEVGVDVPNASAMVVLDADRYGV 610

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTI 693
               + L Q  GR  R     + L+   +
Sbjct: 611 ----SQLHQLRGRIGRGSFPGICLFVSGV 635


>gi|291522172|emb|CBK80465.1| ATP-dependent DNA helicase RecG [Coprococcus catus GD/7]
          Length = 687

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 10/93 (10%)

Query: 595 AEDLTEY------LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           AE++ EY      +   +I+V Y+H ++K  ++  I+     G+  VLV   ++  G+D+
Sbjct: 488 AENVQEYTEKLKKVLPADIKVEYLHGQMKPEQKNGIMERFSEGEIQVLVSTTVIEVGVDV 547

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           P   ++ I +A++ G       L Q  GR  R 
Sbjct: 548 PNATVMMIENAERFGL----AQLHQLRGRVGRG 576


>gi|291484123|dbj|BAI85198.1| primosome assembly protein PriA [Bacillus subtilis subsp. natto
           BEST195]
          Length = 805

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 15/102 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+R+ E+LT+ L       R +  +V T  R     +++     GK D+L+G  ++ +GL
Sbjct: 565 TQRVEEELTKVL----PSARVIRMDVDTTSRKGAHEKLLSAFGEGKADILLGTQMIAKGL 620

Query: 647 DIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           D P   LV +L AD    +       ++   L Q  GRA R+
Sbjct: 621 DFPNVTLVGVLSADTTLHIPDFRSAEKTFQLLTQVSGRAGRH 662



 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 152 DQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAA 207
           +Q AA   + + + S E KV LL GVTGSGKT    + IE   A  + AIV+ P   L  
Sbjct: 271 EQRAAFEPIRETLDSDEHKVFLLHGVTGSGKTEIYLQSIEKVLAKGKEAIVLVPEISLTP 330

Query: 208 QLYSEFKNFF 217
           Q+ + FK  F
Sbjct: 331 QMVNRFKGRF 340


>gi|291437415|ref|ZP_06576805.1| helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291340310|gb|EFE67266.1| helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 463

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A DL + L +R      +H ++    R + +R  R GK DVLV  ++   G+D+
Sbjct: 266 TKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDV 323


>gi|253582570|ref|ZP_04859791.1| transcription-repair coupling factor [Fusobacterium varium ATCC
           27725]
 gi|251835440|gb|EES63980.1| transcription-repair coupling factor [Fusobacterium varium ATCC
           27725]
          Length = 983

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
           +L+K +Y +  +   R  + V GD ++IF S   D   R+  FG++IE I+ F   T + 
Sbjct: 110 NLIKNKYDKVYMIEKRMQYSVRGDILDIF-SRDGDYPVRIEFFGDEIERITYFDIETQKS 168

Query: 371 IRNVETIKIYANSH 384
           I N++ I +Y N++
Sbjct: 169 IENLDNINVYINNN 182


>gi|229071788|ref|ZP_04205003.1| ATP-dependent RNA helicase yqfR [Bacillus cereus F65185]
 gi|228711383|gb|EEL63343.1| ATP-dependent RNA helicase yqfR [Bacillus cereus F65185]
          Length = 436

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 66/125 (52%), Gaps = 9/125 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA+ + + L ER ++V  +H ++   +R ++++ +R  +F  +V  +L   G+DI  
Sbjct: 255 TKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI-TKSIQLAIDETTRRRE 709
            G+  +++ +    L      +  +GR AR  +S +   A TI   + + A+D   ++R 
Sbjct: 314 -GISHVINYELPSDL---DFFVHRVGRTARAGHSGI---AVTIYDPANEEALDSLEKQRH 366

Query: 710 KQLEH 714
            + +H
Sbjct: 367 IEFKH 371


>gi|209877927|ref|XP_002140405.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556011|gb|EEA06056.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 680

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 6/106 (5%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +GL ++  V  KR A+ + ++L ++N     +H +    ER   +R  R G+  +LV  +
Sbjct: 456 EGLTVVF-VEMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALRLFRSGQRPILVATD 514

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +   GLDIP    V  LD        +    +  IGR  R  N+ +
Sbjct: 515 VAARGLDIPNITHVINLDMPC-----NIDDYVHRIGRTGRAGNTGL 555


>gi|261405809|ref|YP_003242050.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. Y412MC10]
 gi|261282272|gb|ACX64243.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. Y412MC10]
          Length = 683

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H  +   E+ E++R     +  +L+   ++  G+D+P   L+ I+DAD+ G     
Sbjct: 505 VGLLHGRMTPAEKDEVMRQFYSNEVQLLISTTVVEVGVDVPNATLMIIMDADRFGL---- 560

Query: 669 TSLIQTIGRAARNVN-SKVILYAD 691
           + L Q  GR  R  + S  +L AD
Sbjct: 561 SQLHQLRGRVGRGQHASYCVLVAD 584


>gi|169831556|ref|YP_001717538.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638400|gb|ACA59906.1| DEAD/DEAH box helicase domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 533

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 15/167 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TKR  ++L E L  R     ++H +++  +R  ++   R G+ D+LV  ++  
Sbjct: 248 RAIIFCRTKRRVDELAEALRSRGYSADHIHGDLEQNQRNRVMGAFREGEIDLLVATDVAA 307

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            G+D+     V   D   D E ++      I   GRA R   +  ++Y        +L +
Sbjct: 308 RGIDVQNISHVINYDCPQDPESYVHR----IGRTGRAGRTGTAITLVYPK------ELPL 357

Query: 702 DETTRRREK-QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
             T +R  K ++E +   ++    V ++ ME+    LLE   T N++
Sbjct: 358 LRTIQRLVKVRIERHPIPSL--ADVVDRRMEIWRQRLLEALGTGNLT 402


>gi|119386789|ref|YP_917844.1| DEAD/DEAH box helicase domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119377384|gb|ABL72148.1| DEAD/DEAH box helicase domain protein [Paracoccus denitrificans
           PD1222]
          Length = 697

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 14/103 (13%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +VR +H ++   ER   + D   G+  +LV   ++  G+D+PE  ++ I  A+  G    
Sbjct: 514 QVRLVHGQMPADERDAAMADFAAGRAGILVATTVIEVGVDVPEATIMVIERAESFGL--- 570

Query: 668 KTSLIQTIGRAAR--NVNSKVILYADTITKSIQLAIDETTRRR 708
              L Q  GR  R    +S +++Y + ++        ET RRR
Sbjct: 571 -AQLHQLRGRVGRGSGASSCLLMYHEPLS--------ETGRRR 604


>gi|74318799|ref|YP_316539.1| replication restart DNA helicase PriA [Thiobacillus denitrificans
           ATCC 25259]
 gi|74058294|gb|AAZ98734.1| Primosomal protein n [Thiobacillus denitrificans ATCC 25259]
          Length = 719

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILA 206
           + +Q AA+  LL  +     V L+ GVTGSGKT    +VI+A+    R A+V+ P   L 
Sbjct: 193 TAEQQAALDVLLPTL-GEFAVHLVHGVTGSGKTELYLRVIDAVLAAGRQALVLIPEIALT 251

Query: 207 AQLYSEFKNFFP 218
            QL   F+  FP
Sbjct: 252 PQLEGHFRARFP 263


>gi|14861055|dbj|BAB62084.1| homologous to comFORF1 in Bacillus subtilis~llmORF4 [Staphylococcus
           aureus]
          Length = 317

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 602 LYERNI-RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           +Y++ I ++ Y+HSE   + R E +  LR G FDV+    +L  G  +    +V I DA 
Sbjct: 203 VYKQKITKLTYVHSE--DVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVI-DAH 259

Query: 661 KEGFLRSKTSLIQTIGRAARNVN---SKVILYADTITKSIQLAIDETTR 706
           +     ++ +LIQ  GR  R +     KV+ + + ++ ++  A  E  R
Sbjct: 260 Q----YTQEALIQIAGRVGRKLECPAGKVLFFHEGVSMNMIQAKKEIQR 304


>gi|319783818|ref|YP_004143294.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169706|gb|ADV13244.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 702

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 14/103 (13%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+  +H  +K  E+ E +R  + G+  +L+   ++  G+D+P+  ++ I  A++ G    
Sbjct: 519 RIGLVHGRLKGAEKDEAMRAFKQGETRILIATTVIEVGVDVPDATVMVIEHAERFGL--- 575

Query: 668 KTSLIQTIGRAARN--VNSKVILYADTITKSIQLAIDETTRRR 708
              L Q  GR  R    +S V+LY D         + ET +RR
Sbjct: 576 -AQLHQLRGRVGRGDKPSSCVLLYKDP--------LGETAKRR 609


>gi|315640866|ref|ZP_07895965.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           italicus DSM 15952]
 gi|315483405|gb|EFU73902.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           italicus DSM 15952]
          Length = 449

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+   ++  YL E++++V  +H ++   ER  +++ ++  +F  +V  +L   G+DI  
Sbjct: 251 TKQRVNEIANYLKEQDLKVATIHGDISPRERKRVMKQVQNMEFQYVVATDLAARGIDIE- 309

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            G+  +++A+    L      I  +GR  RN
Sbjct: 310 -GVSHVINAEIPDDL---DFFIHRVGRTGRN 336


>gi|295394596|ref|ZP_06804815.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972489|gb|EFG48345.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 459

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A+   R ++   TKR A+ LT  L  R  + + +H ++    R + ++  R G  DVL
Sbjct: 245 LRAEGRGRTIIFARTKRTADRLTGELKARGFQAQALHGDLNQHMREKALKRFRDGTTDVL 304

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  ++   G+DI +   V      ++       + +  IGR  R  N+ + +
Sbjct: 305 VATDVAARGIDIDDVTHVINYQCPED-----DKTYVHRIGRTGRAGNTGIAV 351


>gi|218666669|ref|YP_002424872.1| transcription-repair coupling factor [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218518882|gb|ACK79468.1| transcription-repair coupling factor [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 1149

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 9/116 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +RMA  L   L E   R+R  H ++   E   ++ D    +FD+L+   ++  G+D P  
Sbjct: 825 ERMAATLRRLLPE--ARLRVAHGQMPEGELEAVMLDFYHQRFDILLCTTIIESGIDNPHA 882

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
             + I  ADK G       L Q  GR  R+       YA   T  ++   D+  RR
Sbjct: 883 NTILINRADKFGL----AQLHQLRGRVGRSHQRA---YAYLFTPDLRAMSDDARRR 931


>gi|213406593|ref|XP_002174068.1| ATP-dependent RNA helicase, eIF4A related [Schizosaccharomyces
           japonicus yFS275]
 gi|212002115|gb|EEB07775.1| ATP-dependent RNA helicase, eIF4A related [Schizosaccharomyces
           japonicus yFS275]
          Length = 394

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   ++R  + L E + E N  V  MH E+   ER  I+++ R
Sbjct: 253 DLYDTLTIT-----QAVIFCNSRRKVDWLAEKMREANFTVTSMHGEMPQKERDAIMQEFR 307

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +++E +       I  IGR+ R
Sbjct: 308 QGHSRVLLCTDIWARGIDVQQVSLVINYDLPSNRENY-------IHRIGRSGR 353


>gi|206971225|ref|ZP_03232176.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206733997|gb|EDZ51168.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
          Length = 436

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 66/125 (52%), Gaps = 9/125 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA+ + + L ER ++V  +H ++   +R ++++ +R  +F  +V  +L   G+DI  
Sbjct: 255 TKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI-TKSIQLAIDETTRRRE 709
            G+  +++ +    L      +  +GR AR  +S +   A TI   + + A+D   ++R 
Sbjct: 314 -GISHVINYELPSDL---DFFVHRVGRTARAGHSGI---AVTIYDPANEEALDSLEKQRH 366

Query: 710 KQLEH 714
            + +H
Sbjct: 367 IEFKH 371


>gi|168576116|ref|ZP_02722021.1| transcription-repair coupling factor [Streptococcus pneumoniae
           MLV-016]
 gi|307066642|ref|YP_003875608.1| transcription-repair coupling factor [Streptococcus pneumoniae
           AP200]
 gi|183578032|gb|EDT98560.1| transcription-repair coupling factor [Streptococcus pneumoniae
           MLV-016]
 gi|306408179|gb|ADM83606.1| Transcription-repair coupling factor (superfamily II helicase)
           [Streptococcus pneumoniae AP200]
          Length = 1169

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 129/309 (41%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  +++      A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|115644373|ref|XP_795982.2| PREDICTED: similar to putative RNA helicase (DEAD box)
           [Strongylocentrotus purpuratus]
 gi|115970054|ref|XP_001184061.1| PREDICTED: similar to putative RNA helicase (DEAD box)
           [Strongylocentrotus purpuratus]
          Length = 386

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 5/117 (4%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I+ A    L  L+ V TK+ A+ L E+LY    +   +H +    ER + ++  R G+
Sbjct: 157 DLISAAGADSL-TLVFVETKKGADSLEEFLYREKFQATSIHGDRSQREREDALKTFRTGR 215

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
             +LV   +   GLDI     V   D   D E ++    +T  +  +G A    N K
Sbjct: 216 TPILVATAVAARGLDIYNVKHVINFDLPTDIEEYVHRIGRTGRVGNVGLATSFFNEK 272


>gi|153827325|ref|ZP_01979992.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2]
 gi|262169080|ref|ZP_06036773.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27]
 gi|262190964|ref|ZP_06049177.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93]
 gi|149738767|gb|EDM53109.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2]
 gi|262022361|gb|EEY41069.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27]
 gi|262033168|gb|EEY51693.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93]
          Length = 643

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 309 LDVPR--ITHVYNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQIRMLRTIERVT 364

Query: 706 RR--REKQLEHNKK 717
           R    E QL H  K
Sbjct: 365 RSSMEEIQLPHRDK 378


>gi|24662330|ref|NP_648413.1| CG6418 [Drosophila melanogaster]
 gi|7294797|gb|AAF50131.1| CG6418 [Drosophila melanogaster]
 gi|16769458|gb|AAL28948.1| LD32732p [Drosophila melanogaster]
 gi|220946788|gb|ACL85937.1| CG6418-PB [synthetic construct]
          Length = 791

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 2/104 (1%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V  K  AE ++  L  +      +H ++   +R ++I   +  + D+LV  ++   
Sbjct: 517 VLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAAR 576

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GLDIP    V   D  ++  + + T  I   GRA    N+  ++
Sbjct: 577 GLDIPHIRNVVNYDTARD--IETHTHRIGRTGRAGEKGNAYTLV 618


>gi|329926589|ref|ZP_08281002.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. HGF5]
 gi|328939130|gb|EGG35493.1| ATP-dependent DNA helicase RecG [Paenibacillus sp. HGF5]
          Length = 683

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H  +   E+ E++R     +  +L+   ++  G+D+P   L+ I+DAD+ G     
Sbjct: 505 VGLLHGRMTPAEKDEVMRQFYSNEVQLLISTTVVEVGVDVPNATLMIIMDADRFGL---- 560

Query: 669 TSLIQTIGRAARNVN-SKVILYAD 691
           + L Q  GR  R  + S  +L AD
Sbjct: 561 SQLHQLRGRVGRGQHASYCVLVAD 584


>gi|295425211|ref|ZP_06817914.1| DNA helicase RecG [Lactobacillus amylolyticus DSM 11664]
 gi|295064987|gb|EFG55892.1| DNA helicase RecG [Lactobacillus amylolyticus DSM 11664]
          Length = 679

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H ++   ++ EI+ D   G+ D+LV  +++  G+D+    ++ I +AD+ G     
Sbjct: 503 VVLLHGQMPGPKKDEIMADFAAGEIDILVTTSVIEVGVDVANANMMVIYNADRFGL---- 558

Query: 669 TSLIQTIGRAARN-VNSKVILYADTITKS 696
           + L Q  GR  R    S  +  AD  T S
Sbjct: 559 SQLHQLRGRIGRGQTQSYCVFVADPKTDS 587


>gi|317129260|ref|YP_004095542.1| primosomal protein N' [Bacillus cellulosilyticus DSM 2522]
 gi|315474208|gb|ADU30811.1| primosomal protein N' [Bacillus cellulosilyticus DSM 2522]
          Length = 809

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 15/102 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+++ E+L + L      VR +  +V T  R     E++     G+ DVL+G  ++ +GL
Sbjct: 569 TQKVEEELNKVLSG----VRVIRMDVDTTRRKGSHEELLNKFGRGEADVLLGTQMIAKGL 624

Query: 647 DIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           D P   LV +L AD    +       R+   L Q  GRA R+
Sbjct: 625 DFPNITLVGVLAADSMLHIPDFRSAERTFQLLTQVSGRAGRH 666


>gi|261206660|ref|ZP_05921358.1| primosomal protein n [Enterococcus faecium TC 6]
 gi|289565021|ref|ZP_06445475.1| primosomal protein n [Enterococcus faecium D344SRF]
 gi|294614919|ref|ZP_06694810.1| primosomal protein N' [Enterococcus faecium E1636]
 gi|260079153|gb|EEW66846.1| primosomal protein n [Enterococcus faecium TC 6]
 gi|289163228|gb|EFD11074.1| primosomal protein n [Enterococcus faecium D344SRF]
 gi|291592205|gb|EFF23823.1| primosomal protein N' [Enterococcus faecium E1636]
          Length = 802

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 15/101 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+++ E+L E LY +    R +  +V T  R     +I++     + D+L+G  ++ +GL
Sbjct: 563 TQKVEEELRE-LYPQ---ARILRMDVDTTRRKGAHEQILQKFGAKEADILLGTQMIAKGL 618

Query: 647 DIPECGLVAILDADKE----GFLRSKTS---LIQTIGRAAR 680
           D PE  LV +L+AD       F  S+ +   L Q  GRA R
Sbjct: 619 DFPEVTLVGVLNADTSLNLPDFRSSEHTFQLLTQVSGRAGR 659


>gi|226356717|ref|YP_002786457.1| bifunctional helicase type III restriction enzyme/ DEAD/DEAH box
           helicase [Deinococcus deserti VCD115]
 gi|226318707|gb|ACO46703.1| putative bifunctional protein: Helicase Type III restriction
           enzyme/ DEAD/DEAH box helicase [Deinococcus deserti
           VCD115]
          Length = 467

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 13/122 (10%)

Query: 583 LRILLTVLTKRMAE--------DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           LR+L  +L    AE        + T Y   R   +  +  +    ER  ++   R G + 
Sbjct: 319 LRVLEEILVNHPAERTLIFTDDNATVYRISREFLIPAITHQTPVKERHGLLEKFRSGAYR 378

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV   +L EG+D+PE  +  +L         ++   IQ +GR  R    K  +  + IT
Sbjct: 379 ILVTSRVLNEGVDVPEASVAVVLSGTA-----TEREHIQRLGRILRKAEGKTAVLYEVIT 433

Query: 695 KS 696
           + 
Sbjct: 434 EG 435


>gi|229918594|ref|YP_002887240.1| ATP-dependent DNA helicase RecG [Exiguobacterium sp. AT1b]
 gi|229470023|gb|ACQ71795.1| ATP-dependent DNA helicase RecG [Exiguobacterium sp. AT1b]
          Length = 676

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 7/100 (7%)

Query: 595 AEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           A  L E L ER  N  V  MH ++ + E+ E+++        +LV   ++  G+++P   
Sbjct: 482 ATALYELLKERFSNYGVGLMHGKLSSTEKDEVMKSFADNATQILVSTTVVEVGVNVPNAS 541

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYAD 691
           L+ I DA++ G       L Q  GR  R  + S  IL  D
Sbjct: 542 LIIIHDAERFGL----AQLHQLRGRVGRGAHQSFCILVGD 577


>gi|69245425|ref|ZP_00603420.1| Primosomal protein n [Enterococcus faecium DO]
 gi|257879836|ref|ZP_05659489.1| primosomal protein N [Enterococcus faecium 1,230,933]
 gi|257882562|ref|ZP_05662215.1| primosomal protein N [Enterococcus faecium 1,231,502]
 gi|257891677|ref|ZP_05671330.1| primosomal protein N [Enterococcus faecium 1,231,410]
 gi|258614262|ref|ZP_05712032.1| primosomal protein n' [Enterococcus faecium DO]
 gi|260559509|ref|ZP_05831690.1| primosomal protein n [Enterococcus faecium C68]
 gi|293553673|ref|ZP_06674297.1| primosomal protein N` [Enterococcus faecium E1039]
 gi|293563683|ref|ZP_06678124.1| primosomal protein N' [Enterococcus faecium E1162]
 gi|293570095|ref|ZP_06681175.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Enterococcus faecium E1071]
 gi|294623685|ref|ZP_06702518.1| primosomal protein N' [Enterococcus faecium U0317]
 gi|314938233|ref|ZP_07845533.1| primosomal protein [Enterococcus faecium TX0133a04]
 gi|314943130|ref|ZP_07849928.1| primosomal protein [Enterococcus faecium TX0133C]
 gi|314949327|ref|ZP_07852669.1| primosomal protein [Enterococcus faecium TX0082]
 gi|314952261|ref|ZP_07855275.1| primosomal protein [Enterococcus faecium TX0133A]
 gi|314992117|ref|ZP_07857567.1| primosomal protein [Enterococcus faecium TX0133B]
 gi|314996299|ref|ZP_07861355.1| primosomal protein [Enterococcus faecium TX0133a01]
 gi|68195807|gb|EAN10243.1| Primosomal protein n [Enterococcus faecium DO]
 gi|257814064|gb|EEV42822.1| primosomal protein N [Enterococcus faecium 1,230,933]
 gi|257818220|gb|EEV45548.1| primosomal protein N [Enterococcus faecium 1,231,502]
 gi|257828037|gb|EEV54663.1| primosomal protein N [Enterococcus faecium 1,231,410]
 gi|260074608|gb|EEW62929.1| primosomal protein n [Enterococcus faecium C68]
 gi|291587467|gb|EFF19351.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Enterococcus faecium E1071]
 gi|291596900|gb|EFF28118.1| primosomal protein N' [Enterococcus faecium U0317]
 gi|291602248|gb|EFF32476.1| primosomal protein N` [Enterococcus faecium E1039]
 gi|291604367|gb|EFF33860.1| primosomal protein N' [Enterococcus faecium E1162]
 gi|313589543|gb|EFR68388.1| primosomal protein [Enterococcus faecium TX0133a01]
 gi|313593331|gb|EFR72176.1| primosomal protein [Enterococcus faecium TX0133B]
 gi|313595603|gb|EFR74448.1| primosomal protein [Enterococcus faecium TX0133A]
 gi|313598138|gb|EFR76983.1| primosomal protein [Enterococcus faecium TX0133C]
 gi|313642429|gb|EFS07009.1| primosomal protein [Enterococcus faecium TX0133a04]
 gi|313644276|gb|EFS08856.1| primosomal protein [Enterococcus faecium TX0082]
          Length = 802

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 15/101 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+++ E+L E LY +    R +  +V T  R     +I++     + D+L+G  ++ +GL
Sbjct: 563 TQKVEEELRE-LYPQ---ARILRMDVDTTRRKGAHEQILQKFGAKEADILLGTQMIAKGL 618

Query: 647 DIPECGLVAILDADKE----GFLRSKTS---LIQTIGRAAR 680
           D PE  LV +L+AD       F  S+ +   L Q  GRA R
Sbjct: 619 DFPEVTLVGVLNADTSLNLPDFRSSEHTFQLLTQVSGRAGR 659



 Score = 37.4 bits (85), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLL-KGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPA 196
           F   T    + +Q  A+ Q++  G   +++V LL G+TGSGKT    + I  +    + A
Sbjct: 257 FDQTTALELNAEQKNAVEQIITAGQQQKDQVFLLEGITGSGKTEVYLQAIADVLSENKTA 316

Query: 197 IVMAPNKILAAQLYSEFKNFF 217
           I++ P   L  Q+   FK  F
Sbjct: 317 IMLVPEIALTPQMVERFKGRF 337


>gi|322699685|gb|EFY91445.1| ATP dependent RNA helicase (Dbp5), putative [Metarhizium acridum
           CQMa 102]
          Length = 487

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 38/69 (55%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++ A ++   + +   +V  +H E ++ ER E++   R G+  VL+  NLL  G
Sbjct: 315 IIFVKTRKSANEIQRRMTDDGHKVTVLHGEFESSERQELLAKFRNGESKVLITTNLLSRG 374

Query: 646 LDIPECGLV 654
           +D+    +V
Sbjct: 375 IDVSSVSMV 383


>gi|315296619|gb|EFU55914.1| transcription-repair coupling factor [Escherichia coli MS 16-3]
          Length = 1164

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 32  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 91

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  ++         +L++R     V   S ++
Sbjct: 92  LPYDSFSPHQDI------ISSRLSTLYQLPTIQRGVLIVPVNTLMQR-----VCPHSFLH 140

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 141 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 192 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 247 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 289

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 290 SYFPANTLL 298



 Score = 37.4 bits (85), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 839 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 896

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 897 NTIIIERADHFGL----AQLHQLRGRVGRS 922


>gi|297538310|ref|YP_003674079.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp.
           301]
 gi|297257657|gb|ADI29502.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301]
          Length = 630

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TKR  + L E LY    +   +H ++    R   +  LR G   VLV  ++   
Sbjct: 269 VIIFTSTKRHCDVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRQGDVKVLVATDVAAR 328

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+DI   G+  +++ D   F       I   GRA +      I +A  + + I   I++ 
Sbjct: 329 GIDI--NGISHVINYDLPKFAEDYVHRIGRTGRAGK--TGIAISFASNMDRHILRKIEQF 384

Query: 705 TRRR 708
           T  R
Sbjct: 385 TGNR 388


>gi|257888657|ref|ZP_05668310.1| primosomal protein N [Enterococcus faecium 1,141,733]
 gi|257897387|ref|ZP_05677040.1| primosomal protein N [Enterococcus faecium Com12]
 gi|293378853|ref|ZP_06625008.1| primosomal protein N' [Enterococcus faecium PC4.1]
 gi|257824711|gb|EEV51643.1| primosomal protein N [Enterococcus faecium 1,141,733]
 gi|257833952|gb|EEV60373.1| primosomal protein N [Enterococcus faecium Com12]
 gi|292642394|gb|EFF60549.1| primosomal protein N' [Enterococcus faecium PC4.1]
          Length = 802

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 15/101 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+++ E+L E LY +    R +  +V T  R     +I++     + D+L+G  ++ +GL
Sbjct: 563 TQKVEEELRE-LYPQ---ARILRMDVDTTRRKGAHEQILQKFGAKEADILLGTQMIAKGL 618

Query: 647 DIPECGLVAILDADKE----GFLRSKTS---LIQTIGRAAR 680
           D PE  LV +L+AD       F  S+ +   L Q  GRA R
Sbjct: 619 DFPEVTLVGVLNADTSLNLPDFRSSEHTFQLLTQVSGRAGR 659


>gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4]
          Length = 499

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L++ L  R  +   +H ++   +R  ++R  + G+ +VLV  ++   GLDI  
Sbjct: 249 TKRRVDELSKALSIRGYQAEGIHGDLSQAKRSSVLRKFKEGRIEVLVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 307 SGVTHVYNYD---IPQDPESYVHRIGRTGR 333


>gi|57899404|dbj|BAD88051.1| putative ATP-dependent RNA helicase DB10 [Oryza sativa Japonica
           Group]
 gi|215694706|dbj|BAG89897.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 583

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G ++L+   TKRM + L   L  R      +H +    ER +++   R G+  +LV  ++
Sbjct: 186 GSKVLIFCTTKRMCDQLARTLT-RQFGASAIHGDKSQSEREKVLSHFRSGRSPILVATDV 244

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              GLDI +  +V   D     F       +  IGR  R
Sbjct: 245 AARGLDIKDIRVVINYD-----FPTGIEDYVHRIGRTGR 278


>gi|90962182|ref|YP_536098.1| ComF operon protein 1 [Lactobacillus salivarius UCC118]
 gi|90821376|gb|ABE00015.1| ComF operon protein 1 [Lactobacillus salivarius UCC118]
          Length = 445

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 15/101 (14%)

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIE ++ +R  ++  L+   +L  G+  PE  L+ +L AD   F  S ++L+Q  GR  R
Sbjct: 347 RIEKVQKMRNKEYTYLITTTILERGVTFPEIDLL-VLGADNSVF--STSALVQIAGRVGR 403

Query: 681 NV---NSKVILYADTITKSIQLAIDETTRRREKQLEH-NKK 717
           +V   +  VI   D  T+ ++ A        +KQ+E  NKK
Sbjct: 404 SVSRPDGDVIFICDRYTRKVKDA--------QKQIEFLNKK 436


>gi|83816303|ref|YP_446856.1| helicase domain-containing protein [Salinibacter ruber DSM 13855]
 gi|83757697|gb|ABC45810.1| Helicase conserved C-terminal domain protein [Salinibacter ruber
           DSM 13855]
          Length = 610

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERN--IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++L+T ++ R A D+ +++  R   +    +  +V   ER E +   R G+ DV+V +++
Sbjct: 344 QMLVTCMSNRHAADVLDFMERRYGWLSATRIGQDVPRDEREERLEAYRQGEVDVMVQVDM 403

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           + EG DI    ++A LD      + +++  +Q I R  R
Sbjct: 404 IGEGTDIKTISVIAKLD-----LVSARSKTLQQIFRGMR 437


>gi|332198663|gb|EGJ12746.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA41317]
          Length = 1169

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 129/309 (41%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  +++      A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302



 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|327349044|gb|EGE77901.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis ATCC 18188]
          Length = 644

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLVA 655
           LTE      I  RY+ S+     R   +   R  ++ VLV   L  EG DIP  +C L+A
Sbjct: 301 LTERFRRFGIDARYITSQTPKDLRTNELEAFRNQEYPVLVNCGLFTEGTDIPNIDCVLLA 360

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR 680
                     RSK  LIQ IGR  R
Sbjct: 361 RP-------TRSKNLLIQMIGRGLR 378


>gi|330841793|ref|XP_003292875.1| hypothetical protein DICPUDRAFT_157642 [Dictyostelium purpureum]
 gi|325076832|gb|EGC30587.1| hypothetical protein DICPUDRAFT_157642 [Dictyostelium purpureum]
          Length = 884

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 11/123 (8%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+ D I +   +   I+    T    E L++YL E NI   + H  +K  ER+EI +   
Sbjct: 627 DIADYIKMRQSRSCGIIYCATTND-CELLSQYLNEENIDSHFYHGSLKNSERVEIQKAWT 685

Query: 630 LGKFDVLVGINLLREGLDIPECGLVA--ILDADKEGFLRSKTSLIQTIGRAARN-VNSKV 686
              F ++V       G+D+ +   +    + +  E +        Q  GRA R+ + S+ 
Sbjct: 686 NKSFKIIVTTLAFGMGIDVKDVRFIIHYTMPSSIEAYY-------QQTGRAGRDGLPSEC 738

Query: 687 ILY 689
           ILY
Sbjct: 739 ILY 741


>gi|320583687|gb|EFW97900.1| ATP-dependent DNA helicase [Pichia angusta DL-1]
          Length = 1082

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+I + + G ++VLV  ++  EGLDI E  L+   D+       S    IQ +GR  R  
Sbjct: 577 ELIAEFKKGVYNVLVATSIGEEGLDIGEVDLIVCYDS-----TSSPIKNIQRMGRTGRKR 631

Query: 683 NSKVIL 688
           + ++IL
Sbjct: 632 DGRIIL 637


>gi|308069677|ref|YP_003871282.1| Primosomal protein N' (Replication factor Y) [Paenibacillus
           polymyxa E681]
 gi|305858956|gb|ADM70744.1| Primosomal protein N' (Replication factor Y) [Paenibacillus
           polymyxa E681]
          Length = 858

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 11/100 (11%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI--EIIRDLRLGKFDVLVGINLLREGLDI 648
           T+R+ E+L +      IRV  M  +  T +    ++++  R  K DVL+G  ++ +GLD 
Sbjct: 605 TQRVEEELAKLF--PGIRVVRMDVDTTTEKNAHEKLLKQFRDKKADVLLGTQMVAKGLDF 662

Query: 649 PECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           P+  LV ++ AD    L       ++   L Q  GRA R+
Sbjct: 663 PDVTLVGVITADSALNLPDFRAAEKTFQLLTQVAGRAGRH 702


>gi|317152974|ref|YP_004121022.1| primosomal protein N' [Desulfovibrio aespoeensis Aspo-2]
 gi|316943225|gb|ADU62276.1| primosomal protein N' [Desulfovibrio aespoeensis Aspo-2]
          Length = 788

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQ 208
           +Q  A+ +L+  +       L+ GVTGSGKT    +++ A     R ++++AP   L+ +
Sbjct: 255 EQRVALDELIVTMDGSGGAHLVHGVTGSGKTVLYLELVRACLARGRSSMLLAPEVALSCR 314

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQP 234
           L+      FP   V   V Y+ Y  P
Sbjct: 315 LFRTVAEHFPQQRV---VFYHGYQSP 337


>gi|262164808|ref|ZP_06032546.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM223]
 gi|262027188|gb|EEY45855.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM223]
          Length = 464

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVYDE---------INLAAQQGLR-ILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y           + L  +   + +L+ + TK  A 
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQVLVFMRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L  YL E+ +    +H       R   + D + G+  +LV  ++   G+DIP+
Sbjct: 258 RLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQ 311


>gi|258620096|ref|ZP_05715135.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|258587454|gb|EEW12164.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
          Length = 464

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVYDE---------INLAAQQGLR-ILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y           + L  +   + +L+ + TK  A 
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQVLVFMRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L  YL E+ +    +H       R   + D + G+  +LV  ++   G+DIP+
Sbjct: 258 RLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQ 311


>gi|255326780|ref|ZP_05367856.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
 gi|255295997|gb|EET75338.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
          Length = 744

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 11/155 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TK+  E++ + L  R      ++ ++    R   +  LR G+ D+LV  ++   
Sbjct: 314 IIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDVAAR 373

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+    LV   D   D E ++      I   GRA R      IL+     K +   I+
Sbjct: 374 GLDVERISLVVNYDIPHDTESYVHR----IGRTGRAGR--EGAAILFVTPREKYMLRQIE 427

Query: 703 ETTRRREKQLEHNKKHNIN---PQSVKEKIMEVID 734
           + TR++ + +       +N    Q   ++I E I+
Sbjct: 428 KATRQKVEPMHMPTAEAVNETRKQRFAQQITETIE 462


>gi|240948170|ref|ZP_04752573.1| ATP-dependent DNA helicase RecG [Actinobacillus minor NM305]
 gi|240297523|gb|EER48030.1| ATP-dependent DNA helicase RecG [Actinobacillus minor NM305]
          Length = 693

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL   L   ++R+  +H  +K  E+  I+ + +    D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLQRAL--PDLRIGLVHGRMKPQEKQAIMAEFKAANLDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I ++++ G       L Q  GR  R   +   V++Y   + K
Sbjct: 567 IENSERLGL----AQLHQLRGRVGRGSTASHCVLMYKPPLGK 604


>gi|238063089|ref|ZP_04607798.1| type III restriction enzyme subunit res [Micromonospora sp. ATCC
           39149]
 gi|237884900|gb|EEP73728.1| type III restriction enzyme subunit res [Micromonospora sp. ATCC
           39149]
          Length = 1066

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 8/125 (6%)

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           AR  +  V D++++   + L   +++     AE + ++     +    + S      +  
Sbjct: 581 ARIVLSSVRDKVDVHRMRALGFCVSI---GHAEFMADWFTRHGVPSAAVTSRADRSAQHG 637

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++RD R GK  VL  ++L  EG+D+P    + +L   +     S T  +Q +GR  R  +
Sbjct: 638 LLRDFRAGKLRVLFTVDLFNEGVDLPMVDTILMLRPTE-----SATIFLQQLGRGLRLDD 692

Query: 684 SKVIL 688
            K  L
Sbjct: 693 DKPCL 697


>gi|284799822|ref|ZP_05984959.2| transcription-repair coupling factor [Neisseria subflava NJ9703]
 gi|284796912|gb|EFC52259.1| transcription-repair coupling factor [Neisseria subflava NJ9703]
          Length = 1164

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 42/208 (20%), Positives = 86/208 (41%), Gaps = 17/208 (8%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  +   A +L + +  F PH+    F+  ++    E + P  D   E+ S++ +   
Sbjct: 67  VVLTQDAEQALRLQTAWLFFRPHDTA-VFLPDWETLPYERFSPHQDLVSERLSALWQ--- 122

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            ++           D + V   + +  +  V   +     LK G +++   L + LV   
Sbjct: 123 -IKSGVA-------DVLFVPVATAMQKLPPVSFLAGRTFWLKTGQTLDIGRLKTDLVDAG 174

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  
Sbjct: 175 YNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVSE 233

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELK 404
           I++     +    PT + A K  +   +
Sbjct: 234 IRLLPAHEF----PTDSEAQKIFRSRFR 257



 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 855 RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 911

Query: 668 KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
              L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 912 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 947


>gi|218899452|ref|YP_002447863.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|228902809|ref|ZP_04066954.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis IBL 4222]
 gi|228910119|ref|ZP_04073939.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis IBL 200]
 gi|228967351|ref|ZP_04128386.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|218540620|gb|ACK93014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|228792386|gb|EEM39953.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228849636|gb|EEM94470.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis IBL 200]
 gi|228856818|gb|EEN01333.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis IBL 4222]
          Length = 436

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 66/125 (52%), Gaps = 9/125 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA+ + + L ER ++V  +H ++   +R ++++ +R  +F  +V  +L   G+DI  
Sbjct: 255 TKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI-TKSIQLAIDETTRRRE 709
            G+  +++ +    L      +  +GR AR  +S +   A TI   + + A+D   ++R 
Sbjct: 314 -GISHVINYELPSDL---DFFVHRVGRTARAGHSGI---AVTIYDPANEEALDSLEKQRH 366

Query: 710 KQLEH 714
            + +H
Sbjct: 367 IEFKH 371


>gi|167573027|ref|ZP_02365901.1| ATP-dependent helicase, DEAD/DEAH family protein [Burkholderia
           oklahomensis C6786]
          Length = 677

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612
           PPV +    A    E +YD I   A      L+ V T+RMAE    +L +R     +   
Sbjct: 256 PPVPLGPVMANDVWERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAH 315

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +
Sbjct: 316 HGSLAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVDLVCQL-----GSPRGIAPFL 370

Query: 673 QTIGRAARNVNS 684
           Q +GR+   V  
Sbjct: 371 QRVGRSGHRVGG 382


>gi|111018314|ref|YP_701286.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
 gi|110817844|gb|ABG93128.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
          Length = 699

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 6/113 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++  LT   A DL   L E+   V     +    ER  + +DL   +   LV  + L  G
Sbjct: 253 IIYALTVSAARDLASLLSEQGHTVAAYTGQTDAAERETLEQDLLGNRVKALVATSALGMG 312

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSI 697
            D P+ G V  L A       S  S  Q +GRA R+ + ++VIL   +  K I
Sbjct: 313 FDKPDLGFVVHLGAPS-----SPISYYQQVGRAGRSTDRAEVILLPGSEDKQI 360


>gi|57233949|ref|YP_181980.1| ATP-dependent DNA helicase RecG [Dehalococcoides ethenogenes 195]
 gi|57224397|gb|AAW39454.1| ATP-dependent DNA helicase RecG [Dehalococcoides ethenogenes 195]
          Length = 740

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H  +   E+  I++    GK D+LV   ++  G+DIP   ++ +  AD+ G    
Sbjct: 563 KVALLHGRMNAAEKESIMKHFNEGKMDILVSTPVVEVGIDIPNATVMLVESADRFGL--- 619

Query: 668 KTSLIQTIGRAARNVNSKVILY 689
            + L Q  GR  R       ++
Sbjct: 620 -SQLHQFRGRVGRGTEQSYCMF 640


>gi|77165119|ref|YP_343644.1| transcription-repair coupling factor [Nitrosococcus oceani ATCC
           19707]
 gi|254433553|ref|ZP_05047061.1| transcription-repair coupling factor [Nitrosococcus oceani AFC27]
 gi|76883433|gb|ABA58114.1| transcription-repair coupling factor [Nitrosococcus oceani ATCC
           19707]
 gi|207089886|gb|EDZ67157.1| transcription-repair coupling factor [Nitrosococcus oceani AFC27]
          Length = 1158

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 91/202 (45%), Gaps = 12/202 (5%)

Query: 180 GKTFTMAKVIEAMQRPA--IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G +F +     A   P   +V+ P+ I A +L  E + F+ +   +  + ++  ++   Y
Sbjct: 29  GSSFGLVLAASAYYHPGPILVITPDTITANRLEDELR-FYRNGQEDSPILHFPDWETLPY 87

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
               DT+   +  ++E++  + +   R  LER   IV  S + +  +   E      + +
Sbjct: 88  ----DTFSPHQDILSERLATL-YQLPR--LERGILIVPVS-TLMQRLAPQEYLETHSLLV 139

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
             GD +  +     L K  Y+     +  G F + G  I++FP     + +R+ +F N++
Sbjct: 140 ATGDHLHLENWRKQLEKGGYRCVSQVMEHGEFAIRGSLIDLFPMG-STLPYRIDLFDNEV 198

Query: 358 EEISEFYPLTGQKIRNVETIKI 379
           + +  F P T + +++V  I++
Sbjct: 199 DSLRSFDPETQRSLQSVAQIQL 220


>gi|119718818|ref|YP_925783.1| DEAD/DEAH box helicase domain-containing protein [Nocardioides sp.
           JS614]
 gi|119539479|gb|ABL84096.1| ATP-dependent RNA helicase CsdA [Nocardioides sp. JS614]
          Length = 589

 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E L E L  R +    ++ +V   +R   +  L+ GK D+LV  ++   
Sbjct: 256 MIVFVRTKNETETLAEKLRARGLSAMAINGDVAQAQRERTVNQLKSGKLDILVATDVAAR 315

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNS 684
           GLD+     V   D   D E ++      I   GRA R+ ++
Sbjct: 316 GLDVERISHVVNYDIPTDTESYVHR----IGRTGRAGRSGDA 353


>gi|324505328|gb|ADY42291.1| ATP-dependent RNA helicase DDX27 [Ascaris suum]
          Length = 688

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 7/107 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           +L V TKR  + L   L    I+V  +HS +   +R+E +   +  + D+L+  +L   G
Sbjct: 394 MLFVQTKRACQRLHIILGLLGIKVGQLHSGLSQTQRVETLSRFKNAELDLLISTDLAARG 453

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYA 690
           LDI   G++ +++      L+     I  +GR AR   V   V L+ 
Sbjct: 454 LDIE--GVLTVINMQMPASLK---QYIHRVGRTARAGRVGRSVSLFG 495


>gi|323142048|ref|ZP_08076896.1| transcription-repair coupling factor [Phascolarctobacterium sp. YIT
           12067]
 gi|322413435|gb|EFY04306.1| transcription-repair coupling factor [Phascolarctobacterium sp. YIT
           12067]
          Length = 1090

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           +QL +G+  EQ+ + ++L+   Y+R +     G F + GD ++++P +    A R+  F 
Sbjct: 142 LQLAVGEEHEQRNIAAALLDLGYERTEQVDALGQFCLRGDILDVYPIN-SSTAVRIEWFD 200

Query: 355 NDIEEISEFYPLTGQKIRNVETIKI 379
           N+++ +  F   T + ++ + +IKI
Sbjct: 201 NELDAMRSFDVDTQRSLQTLTSIKI 225


>gi|309262543|ref|XP_003085827.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Mus
           musculus]
 gi|309271943|ref|XP_003085450.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Mus
           musculus]
          Length = 670

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 6/134 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 398 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLSEFKHGKASILIATDVAS 457

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLD+ +   V   D     +  S    I  IGR AR+  +    Y      +I+ A D 
Sbjct: 458 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKTGTA-YTFFTPNNIKQASDL 511

Query: 704 TTRRREKQLEHNKK 717
            +  RE     N K
Sbjct: 512 ISVLREANQAINPK 525


>gi|302691820|ref|XP_003035589.1| hypothetical protein SCHCODRAFT_65225 [Schizophyllum commune H4-8]
 gi|300109285|gb|EFJ00687.1| hypothetical protein SCHCODRAFT_65225 [Schizophyllum commune H4-8]
          Length = 397

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R   V  MH +++  +R  ++++ R G   VL+  +LL  G+D+ +
Sbjct: 272 TRRKVDWLTEKMHAREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLITTDLLARGIDVQQ 331

Query: 651 CGLV 654
             LV
Sbjct: 332 VSLV 335


>gi|299141134|ref|ZP_07034271.1| primosomal protein N` [Prevotella oris C735]
 gi|298577094|gb|EFI48963.1| primosomal protein N` [Prevotella oris C735]
          Length = 756

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           II D   G+ ++L+G  ++ +GLD     +V ILDAD          +  +   + Q  G
Sbjct: 551 IIDDFSAGRTNILIGTQMISKGLDFDNVSVVGILDADAMLNYPDFRAYEHAFMMMSQVSG 610

Query: 677 RAARNVNSKVILYADTITKSIQL-AIDETTR 706
           RA R     +++     TKS  L  ID+  R
Sbjct: 611 RAGRKGRQGLVILQ---TKSADLPVIDQVVR 638


>gi|296237741|ref|XP_002763877.1| PREDICTED: ATP-dependent RNA helicase DDX3Y-like [Callithrix
           jacchus]
          Length = 647

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L ++LY        +H +    +R E +R  R G+  +LV   +   G
Sbjct: 432 LVFVETKKGADSLEDFLYHEGHACTSIHGDRSQRDREEALRQFRSGRSPILVATAVAARG 491

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVI 687
           LDI     V   D  +D E ++    +T  +  +G A    N K +
Sbjct: 492 LDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNV 537


>gi|294889264|ref|XP_002772733.1| ATP-dependent RNA helicase DED1, putative [Perkinsus marinus ATCC
           50983]
 gi|239877266|gb|EER04549.1| ATP-dependent RNA helicase DED1, putative [Perkinsus marinus ATCC
           50983]
          Length = 622

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +++ D+Y  +    ++GL  L+ V TKR A+++   L         +H +    ER E +
Sbjct: 450 SKLRDLYRVLEEQTEEGL-TLVFVETKRKADEIENMLRRDRYPATSIHGDRSQWEREEAL 508

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           +  + G+  +LV  ++   GLDI    LV   D
Sbjct: 509 KAFKSGELPILVATDVAARGLDISHVNLVINYD 541


>gi|229174959|ref|ZP_04302479.1| ATP-dependent RNA helicase yqfR [Bacillus cereus MM3]
 gi|228608627|gb|EEK65929.1| ATP-dependent RNA helicase yqfR [Bacillus cereus MM3]
          Length = 436

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 66/125 (52%), Gaps = 9/125 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA+ + + L ER ++V  +H ++   +R ++++ +R  +F  +V  +L   G+DI  
Sbjct: 255 TKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI-TKSIQLAIDETTRRRE 709
            G+  +++ +    L      +  +GR AR  +S +   A TI   + + A+D   ++R 
Sbjct: 314 -GISHVINYELPSDL---DFFVHRVGRTARAGHSGI---AVTIYDPANEEALDSLEKQRH 366

Query: 710 KQLEH 714
            + +H
Sbjct: 367 IEFKH 371


>gi|50897083|dbj|BAD34722.1| Dicer-related RNase III protein Dcr1p [Tetrahymena thermophila]
          Length = 1450

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           E+   +++   + K  E+ +I+   R  +F +LV  +++ EG DIP C +V         
Sbjct: 445 EKQFSIKFYALKQKYSEQQKIVERFRNKQFKILVSTSVVEEGFDIPSCNIVIAFSK---- 500

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYA 690
            + S+   IQ  GR AR  NSK   YA
Sbjct: 501 -IISQRQYIQMKGR-ARAENSK--FYA 523


>gi|50311069|ref|XP_455558.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660286|sp|Q6CKI1|PRP5_KLULA RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|49644694|emb|CAG98266.1| KLLA0F10505p [Kluyveromyces lactis]
          Length = 812

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 5/116 (4%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + L   +  + ++ V ++++ + L + L    I    +H+   + ER+  ++  +   
Sbjct: 491 DRLALHRGEDEKTIIFVGSQQLCDLLYDELLLNGITTFPIHAGKPSAERLRNLQKFKETD 550

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             +L+   +L  GL++PE  LV I +A K     +    + T+GR  R  N+ V L
Sbjct: 551 NGILICTEVLSRGLNVPEVSLVIIYNAAK-----TIAQYVHTVGRTGRGTNNGVAL 601


>gi|223933446|ref|ZP_03625431.1| ATP-dependent DNA helicase RecG [Streptococcus suis 89/1591]
 gi|330832178|ref|YP_004401003.1| ATP-dependent DNA helicase [Streptococcus suis ST3]
 gi|223897884|gb|EEF64260.1| ATP-dependent DNA helicase RecG [Streptococcus suis 89/1591]
 gi|329306401|gb|AEB80817.1| ATP-dependent DNA helicase [Streptococcus suis ST3]
          Length = 672

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +  DL  +  E+ + V  +H ++K  E+  I++  +  K ++LV   ++  G+++P   +
Sbjct: 485 LQSDLQAHFGEQ-VTVDLLHGKMKNDEKDAIMQAFKERKTNILVSTTVIEVGVNVPNATV 543

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T+S
Sbjct: 544 MVIMDADRFGL----SQLHQLRGRVGRGHKQSYAVLVANPKTES 583


>gi|297700670|ref|XP_002827359.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like [Pongo
           abelii]
          Length = 600

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  E   E +YE  I V  +H+E    +R   +   R GK  VL+   LL  G+D     
Sbjct: 425 RAKELFHELIYE-GINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVN 483

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILY 689
           LV   D     F  S    I  IGR  R  N  K I +
Sbjct: 484 LVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITF 516


>gi|293572655|ref|ZP_06683623.1| primosomal protein N' [Enterococcus faecium E980]
 gi|291607241|gb|EFF36595.1| primosomal protein N' [Enterococcus faecium E980]
          Length = 802

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 15/101 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+++ E+L E LY +    R +  +V T  R     +I++     + D+L+G  ++ +GL
Sbjct: 563 TQKVEEELRE-LYPQ---ARILRMDVDTTRRKGAHEQILQKFGAKEADILLGTQMIAKGL 618

Query: 647 DIPECGLVAILDADKE----GFLRSKTS---LIQTIGRAAR 680
           D PE  LV +L+AD       F  S+ +   L Q  GRA R
Sbjct: 619 DFPEVTLVGVLNADTSLNLPDFRSSEHTFQLLTQVSGRAGR 659


>gi|225857815|ref|YP_002739325.1| transcription-repair coupling factor [Streptococcus pneumoniae
           70585]
 gi|225720446|gb|ACO16300.1| transcription-repair coupling factor [Streptococcus pneumoniae
           70585]
          Length = 1169

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 129/309 (41%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  +++      A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302



 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|225463593|ref|XP_002271370.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 543

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 63/159 (39%), Gaps = 16/159 (10%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   +D+ EYL  + +    +H      ER   I   + GK DVLV  ++  +
Sbjct: 352 VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASK 411

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P+   V   D   E       + +  IGR  R   + +   A T     Q    ET
Sbjct: 412 GLDFPDIKHVINYDMPAE-----IENYVHRIGRTGRCGKTGI---ATTFINKNQ---SET 460

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743
           T    K L    K  I P      + E+ DP+   DA T
Sbjct: 461 TLLDLKHLLQEAKQRIPPV-----LAELNDPMEDVDAIT 494


>gi|223042049|ref|ZP_03612226.1| ATP-dependent DNA helicase [Actinobacillus minor 202]
 gi|223017166|gb|EEF15601.1| ATP-dependent DNA helicase [Actinobacillus minor 202]
          Length = 693

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDL   L   ++R+  +H  +K  E+  I+ + +    D+LV   ++  G+D+P   L+ 
Sbjct: 509 EDLQRAL--PDLRIGLVHGRMKPQEKQAIMAEFKAANLDLLVATTVIEVGVDVPNASLMI 566

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I ++++ G       L Q  GR  R   +   V++Y   + K
Sbjct: 567 IENSERLGL----AQLHQLRGRVGRGSTASHCVLMYKPPLGK 604


>gi|224104457|ref|XP_002333939.1| predicted protein [Populus trichocarpa]
 gi|222839273|gb|EEE77610.1| predicted protein [Populus trichocarpa]
          Length = 238

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 70/183 (38%), Gaps = 26/183 (14%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   +D+ EYL  + +    +H      ER   I   + GK DVLV  ++  +
Sbjct: 47  VLVFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASK 106

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P+   V   D   E       + +  IGR  R   + +   A T     Q    ET
Sbjct: 107 GLDFPDIQHVINYDMPAE-----IENYVHRIGRTGRCGKTGI---ATTFINKNQ---SET 155

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
           T    K L    K  I P      + E+ DP  +ED  T          S S  KG A+ 
Sbjct: 156 TLLDLKHLLQEAKQRIPPV-----LAELNDP--MEDGDTIT--------SASGVKGCAYC 200

Query: 765 KSL 767
             L
Sbjct: 201 GGL 203


>gi|255950466|ref|XP_002566000.1| Pc22g21030 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593017|emb|CAP99391.1| Pc22g21030 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 552

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  ++V  ++  
Sbjct: 375 KCIIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKQGKSPIMVATDVAS 434

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+ +  +  +L+ D   +  +    +  IGR AR
Sbjct: 435 RGIDVRD--ITHVLNYD---YPNNSEDYVHRIGRTAR 466


>gi|168493994|ref|ZP_02718137.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575852|gb|EDT96380.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC3059-06]
          Length = 1169

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 129/309 (41%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  +++      A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302



 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|158300291|ref|XP_320248.4| AGAP012289-PA [Anopheles gambiae str. PEST]
 gi|157013088|gb|EAA00264.4| AGAP012289-PA [Anopheles gambiae str. PEST]
          Length = 1672

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 13/114 (11%)

Query: 583 LRILLTVLTKRMAED-LTEYLYERNIRVRYMHSEVKTLERIEIIR-------DLRLGKFD 634
           +RI    L+KR  ED L E + + +  V    +  ++++ I ++R       + R  K +
Sbjct: 402 IRIYFHCLSKRDNEDELVEPIVKPDFIVGANAALEESIDAILVVREDRRVIENFRKRKIN 461

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           VL   N+L EG+D+  C +V + DA       S  S +Q+ GRA    ++ +++
Sbjct: 462 VLCATNVLEEGIDLQMCNMVIMYDAP-----LSYASFMQSKGRARMKTSTYLMM 510


>gi|154281885|ref|XP_001541755.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150411934|gb|EDN07322.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1669

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLVA 655
           LTE      +  RY+ S+     R + +   R  ++ VLV   L  EG DIP  +C L+A
Sbjct: 305 LTEAFRRFGVDARYITSQTPKDIRTDELEAFRNQEYPVLVNCGLFTEGTDIPNIDCVLLA 364

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR 680
                     RSK  LIQ IGR  R
Sbjct: 365 RPT-------RSKNLLIQMIGRGLR 382


>gi|148988910|ref|ZP_01820325.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP6-BS73]
 gi|147925721|gb|EDK76797.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP6-BS73]
          Length = 1169

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 129/309 (41%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  +++      A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302



 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|114667862|ref|XP_511433.2| PREDICTED: ATP-dependent RNA helicase ROK1 isoform 4 [Pan
           troglodytes]
          Length = 599

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +   A++L   L    I V  +H+E    +R   +   R GK  VL+   LL  
Sbjct: 415 VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLAR 474

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILY 689
           G+D     LV   D     F  S    I  IGR  R  N  K I +
Sbjct: 475 GIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITF 515


>gi|91778945|ref|YP_554153.1| DEAD-box ATP dependent DNA helicase [Burkholderia xenovorans LB400]
 gi|91691605|gb|ABE34803.1| ATP dependent helicase, Lhr family [Burkholderia xenovorans LB400]
          Length = 1510

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 9/132 (6%)

Query: 557 PPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYM 612
           PPV + +       E VYD +          L+ V T+RMAE    +L ER  +  V   
Sbjct: 292 PPVPLEAVMPNEVWERVYDRLAELVAMHRTTLIFVNTRRMAERAARHLTERLGKEAVAAH 351

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R +  + L+ G+  VL+    L  G+DI +  LV      + G  R+    +
Sbjct: 352 HGSLAREHRFDAEQRLKRGELRVLIATASLELGIDIGDVDLVC-----QMGSPRAIAPFL 406

Query: 673 QTIGRAARNVNS 684
           Q +GR+  +V  
Sbjct: 407 QRVGRSGHHVGG 418


>gi|73667378|ref|YP_303394.1| transcription-repair coupling factor [Ehrlichia canis str. Jake]
 gi|72394519|gb|AAZ68796.1| transcription-repair coupling factor [Ehrlichia canis str. Jake]
          Length = 1128

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           K ++++LT+ +    I++   H ++   +   I+ D   GKF +L+  +++  GLDIP  
Sbjct: 814 KSISDNLTKLV--PGIKINTAHGQLPPTQLDTIMNDFFDGKFTILLTTSIIECGLDIPFA 871

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             + I +AD  G  +    L Q  GR  R
Sbjct: 872 NTIIIHNADMFGLAQ----LYQLKGRVGR 896


>gi|15646131|ref|NP_208313.1| ATP-dependent DNA helicase RecG [Helicobacter pylori 26695]
 gi|3914610|sp|O26051|RECG_HELPY RecName: Full=ATP-dependent DNA helicase recG
 gi|2314702|gb|AAD08562.1| DNA recombinase (recG) [Helicobacter pylori 26695]
          Length = 623

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKTFT-MAKVIE 190
           N+++ +  F     +  + DQ  AI ++   + S    + L++G  G GKT   +A ++ 
Sbjct: 216 NNNERLKAFIASLPFKLTRDQQNAIKEIQNDLTSSIACKRLIIGDVGCGKTMVILASMVL 275

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFP 218
                 ++MAP  ILA QLY+E   F P
Sbjct: 276 TYPNKTLLMAPTSILAKQLYNEALKFLP 303


>gi|325920710|ref|ZP_08182616.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
 gi|325548762|gb|EGD19710.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
          Length = 643

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  ++  IL+     K +  +I+
Sbjct: 311 GLDVERVSHVLNYDIPYDTESYVHR----IGRTGRAGRTGDA--ILFVTPREKGMLRSIE 364

Query: 703 ETTRRREKQLEHNKKHNIN 721
             TR+  ++++      +N
Sbjct: 365 RATRQPIEEMQLPSVDAVN 383


>gi|325103156|ref|YP_004272810.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324972004|gb|ADY50988.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 411

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++    K   + +   L ++ I+    HS+++  +R EI+   + G+  VLVG +++  
Sbjct: 245 IIIFASKKETVKSINSELNKKGIKSEAFHSDLEQHQREEIMNRFKGGQLSVLVGTDVISR 304

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
           G+D+    LV   D   D E +       I  IGR AR
Sbjct: 305 GIDVVGIDLVVNYDVPPDPEDY-------IHRIGRTAR 335


>gi|284801587|ref|YP_003413452.1| phage DNA/RNA helicase [Listeria monocytogenes 08-5578]
 gi|284994729|ref|YP_003416497.1| phage DNA/RNA helicase [Listeria monocytogenes 08-5923]
 gi|284057149|gb|ADB68090.1| phage DNA/RNA helicase [Listeria monocytogenes 08-5578]
 gi|284060196|gb|ADB71135.1| phage DNA/RNA helicase [Listeria monocytogenes 08-5923]
          Length = 380

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 37/76 (48%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G + +L   +   ++ +     +  I   ++  +    ER  II+  R G+  VL  ++L
Sbjct: 154 GQQAILYASSLYQSQKMAASFEQVGITAAHIDGKTPKAERDHIIQQFRNGEIKVLCNLDL 213

Query: 642 LREGLDIPECGLVAIL 657
           + EG D+P+C  V +L
Sbjct: 214 IGEGFDVPDCSTVIML 229


>gi|257894152|ref|ZP_05673805.1| primosomal protein N [Enterococcus faecium 1,231,408]
 gi|257830531|gb|EEV57138.1| primosomal protein N [Enterococcus faecium 1,231,408]
          Length = 685

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 15/101 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+++ E+L E LY +    R +  +V T  R     +I++     + D+L+G  ++ +GL
Sbjct: 446 TQKVEEELRE-LYPQ---ARILRMDVDTTRRKGAHEQILQKFGAKEADILLGTQMIAKGL 501

Query: 647 DIPECGLVAILDADKE----GFLRSKTS---LIQTIGRAAR 680
           D PE  LV +L+AD       F  S+ +   L Q  GRA R
Sbjct: 502 DFPEVTLVGVLNADTSLNLPDFRSSEHTFQLLTQVSGRAGR 542



 Score = 37.7 bits (86), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLL-KGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPA 196
           F   T    + +Q  A+ Q++  G   +++V LL G+TGSGKT    + I  +    + A
Sbjct: 140 FDQTTALELNAEQKNAVEQIITAGQQQKDQVFLLEGITGSGKTEVYLQAIADVLSENKTA 199

Query: 197 IVMAPNKILAAQLYSEFKNFF 217
           I++ P   L  Q+   FK  F
Sbjct: 200 IMLVPEIALTPQMVERFKGRF 220


>gi|296824810|ref|XP_002850715.1| ATP-dependent RNA helicase DBP8 [Arthroderma otae CBS 113480]
 gi|238838269|gb|EEQ27931.1| ATP-dependent RNA helicase DBP8 [Arthroderma otae CBS 113480]
          Length = 527

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 597 DLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           DL E +  R + RV  +HS +   ER+  +   R     +LV  ++   GLDIP  GLV 
Sbjct: 366 DLLERMLRRLSHRVTSLHSLLPQSERVANLSRFRASAARLLVATDVAARGLDIPSVGLVI 425

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR 680
             D       R+    I  +GR AR
Sbjct: 426 NFDVP-----RNPDDYIHRVGRTAR 445


>gi|224141279|ref|XP_002324002.1| predicted protein [Populus trichocarpa]
 gi|222867004|gb|EEF04135.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 6/108 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I  + + G +I++   TK+M + L   L  R      +H +    ER  ++   R G+
Sbjct: 390 EQILRSQEPGSKIIIFCSTKKMCDQLARNL-TRQFGAAAIHGDKSQSERDHVLSQFRTGR 448

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +LV  ++   GLDI +  +V   D     F       +  IGR  R
Sbjct: 449 SPILVATDVAARGLDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGR 491


>gi|225463591|ref|XP_002271334.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 587

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 63/159 (39%), Gaps = 16/159 (10%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   +D+ EYL  + +    +H      ER   I   + GK DVLV  ++  +
Sbjct: 396 VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASK 455

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P+   V   D   E       + +  IGR  R   + +   A T     Q    ET
Sbjct: 456 GLDFPDIKHVINYDMPAE-----IENYVHRIGRTGRCGKTGI---ATTFINKNQ---SET 504

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743
           T    K L    K  I P      + E+ DP+   DA T
Sbjct: 505 TLLDLKHLLQEAKQRIPPV-----LAELNDPMEDVDAIT 538


>gi|145298863|ref|YP_001141704.1| transcription-repair coupling factor [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851635|gb|ABO89956.1| transcription-repair coupling factor [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 1154

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 43/249 (17%), Positives = 102/249 (40%), Gaps = 18/249 (7%)

Query: 161 LKGIHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           L  + ++   +L LG +TGS  +   A++     RP +++  +   A +L  E +     
Sbjct: 6   LPALPAKAGQKLTLGQLTGSSLSLVAARLTTQANRPVLLVTADTPSALRLEQELQFLLAD 65

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID---RMRHSATRSLLERNDCIVVS 276
                 +       P+      DT+   +  I+++++   ++   +   L+     +++ 
Sbjct: 66  QGCPVLMF------PDWETLPYDTFSPHQDIISQRLETLYKLPQMSAGVLIVPISTLMLR 119

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
               +Y    ++ YS M+   K G  +  ++L   L +  Y   D  +  G F   G  +
Sbjct: 120 CAPQVY----LDKYSLMV---KAGQRLNLQQLRGRLAEAGYVAVDQVLEHGEFAARGSLL 172

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++FP    +  +R+  F ++++ I  F P T +    V+T+ +     + T    +    
Sbjct: 173 DLFPMG-SNSPYRIDFFDDEVDSIRPFDPETQRSSEPVKTVSLLPAREFPTDEAAIELFR 231

Query: 397 KYIKEELKM 405
              +E+ ++
Sbjct: 232 GQFREQFEL 240


>gi|134282523|ref|ZP_01769227.1| putative ATP-dependent helicase lhr [Burkholderia pseudomallei 305]
 gi|134246080|gb|EBA46170.1| putative ATP-dependent helicase lhr [Burkholderia pseudomallei 305]
          Length = 1607

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612
           PPV +    A    E +YD I   A      L+ V T+RMAE    +L +R     +   
Sbjct: 256 PPVPLGPVMANDVWERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAH 315

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +
Sbjct: 316 HGSLAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFL 370

Query: 673 QTIGRAARNVNS 684
           Q +GR+  ++  
Sbjct: 371 QRVGRSGHHIGG 382


>gi|41408619|ref|NP_961455.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41396977|gb|AAS04838.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 566

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 4/143 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  E++ E L  R      ++ ++   +R   +  L+ G  D+LV  ++   
Sbjct: 255 MIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVAAR 314

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+     V  L+ D      S    I   GRA R  +   +L+     + +  AI++ 
Sbjct: 315 GLDVERISHV--LNYDIPHDTESYVHRIGRTGRAGR--SGTALLFVSPRERHLLKAIEKA 370

Query: 705 TRRREKQLEHNKKHNINPQSVKE 727
           TR+   + E     ++N Q V +
Sbjct: 371 TRQPLTEAELPTVEDVNAQRVAK 393


>gi|30249765|ref|NP_841835.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30180802|emb|CAD85718.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 457

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR A+ L + L  +  +   MH ++   ER   +  LR G+  +LV  ++   G+DI +
Sbjct: 254 TKRDADSLADNLSSQGHKAAAMHGDMTQRERTRTLTGLRQGRLKILVATDVAARGIDIAD 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAA 679
             +  +++ D   F       I   GRA 
Sbjct: 314 --ITHVINFDLPKFAEDYVHRIGRTGRAG 340


>gi|16803981|ref|NP_465466.1| hypothetical protein lmo1942 [Listeria monocytogenes EGD-e]
 gi|224498608|ref|ZP_03666957.1| hypothetical protein LmonF1_02479 [Listeria monocytogenes Finland
           1988]
 gi|224501258|ref|ZP_03669565.1| hypothetical protein LmonFR_01835 [Listeria monocytogenes FSL
           R2-561]
 gi|254831457|ref|ZP_05236112.1| hypothetical protein Lmon1_08888 [Listeria monocytogenes 10403S]
 gi|255029082|ref|ZP_05301033.1| hypothetical protein LmonL_08026 [Listeria monocytogenes LO28]
 gi|16411395|emb|CAD00020.1| recS [Listeria monocytogenes EGD-e]
          Length = 467

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 12/106 (11%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           +K++AE     L E   +RV Y H ++ T +RI I +    G+ DV+   +    G+D  
Sbjct: 236 SKKLAESTAHELSEIAELRVAYYHGDMDTEDRIIIQQQFVYGQLDVICATSAFGMGIDKA 295

Query: 650 ECGLVA--ILDADKEGFLRSKTSLIQTIGRAARNVNSKV--ILYAD 691
           +   V    + AD E +L       Q IGRA R+    V  +LYA+
Sbjct: 296 DIRYVIHYHMPADLEAYL-------QEIGRAGRDGEDSVAILLYAN 334


>gi|67603410|ref|XP_666549.1| RNA helicase-1 [Cryptosporidium hominis TU502]
 gi|54657570|gb|EAL36322.1| RNA helicase-1 [Cryptosporidium hominis]
          Length = 251

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+    K+  +++ EYL  + +    +H  +   +R   I   R G+ DVLVG ++  
Sbjct: 57  RVLIFSENKKDVDEIHEYLLLKGVNAVAIHGGLTQEQRFRSIEQFRNGEMDVLVGTDVAS 116

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           +GLD      V   D  K+       + +  IGR  R 
Sbjct: 117 KGLDFENIQHVINFDMPKD-----IENYVHRIGRTGRG 149


>gi|326774180|ref|ZP_08233462.1| ATP-dependent RNA helicase DeaD [Actinomyces viscosus C505]
 gi|326636319|gb|EGE37223.1| ATP-dependent RNA helicase DeaD [Actinomyces viscosus C505]
          Length = 558

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 19/162 (11%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A+   R ++   TKR A  + + L  R      +H ++    R + +R  R  K DVL
Sbjct: 316 LQAEGRGRTIIFARTKRTAARVADDLRARGFATGALHGDLGQGAREQALRAFRNNKVDVL 375

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD---- 691
           V  ++   G+D+ +   V      ++     +   +  IGR  R  NS   + + D    
Sbjct: 376 VATDVAARGIDVDDVTHVINYQCPED-----EKIYVHRIGRTGRAGNSGTAVTFVDWDDV 430

Query: 692 ----TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
                I K++ L I+E       +  H  +H  +  S+ EK+
Sbjct: 431 PRWRIIAKALGLPIEEPV-----ETYHTSEHLFSDLSIPEKV 467


>gi|296111735|ref|YP_003622117.1| ATP-dependent DNA helicase RecG [Leuconostoc kimchii IMSNU 11154]
 gi|295833267|gb|ADG41148.1| ATP-dependent DNA helicase RecG [Leuconostoc kimchii IMSNU 11154]
          Length = 676

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H  +   E+  ++ D +     +LV   ++  G+D+P   ++ ILDAD+ G     
Sbjct: 499 VGLLHGRLSNDEKKALMADFKANHIQILVATTVIEVGVDVPNATVMLILDADRFGL---- 554

Query: 669 TSLIQTIGRAAR-NVNSKVILYAD 691
             L Q  GR  R +  S  IL AD
Sbjct: 555 AQLHQLRGRVGRGHRQSYTILVAD 578


>gi|270693399|ref|ZP_06222955.1| ATP-dependent DNA helicase recG [Haemophilus influenzae HK1212]
 gi|270316005|gb|EFA28049.1| ATP-dependent DNA helicase recG [Haemophilus influenzae HK1212]
          Length = 160

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+ L   NI +  +H  +K  E+ +++   +  + D+LV   ++  G+D+P   L+ 
Sbjct: 35  EDLTKALPMLNIGL--VHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMI 92

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQ 698
           I +A++ G     + L Q  GR  R   +   V++Y   + K  Q
Sbjct: 93  IENAERLGL----SQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQ 133


>gi|253699460|ref|YP_003020649.1| type III restriction protein res subunit [Geobacter sp. M21]
 gi|251774310|gb|ACT16891.1| type III restriction protein res subunit [Geobacter sp. M21]
          Length = 1042

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 22/140 (15%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTK-----------------RMAEDLTEYLYERNIR 608
           + +E+VY   N+ A+Q +  ++T LT+                 R A  + E   +R I 
Sbjct: 521 SALENVYVMDNVRAKQRVDAIITALTRYEPDLSNVKGVGFCVTIRHAHFMAEQFSKRGIP 580

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
                S V+     +++ DL  G+   L  ++ L EG+DIP    V  L   +     S 
Sbjct: 581 SGAFVSGVEDDRCSKLLEDLSTGRLTFLFTVDKLSEGVDIPLLNTVLFLRPTE-----SL 635

Query: 669 TSLIQTIGRAARNVNSKVIL 688
           T  +Q +GR  R+   K  L
Sbjct: 636 TVFLQQLGRGLRHAPGKDCL 655


>gi|227484996|ref|ZP_03915312.1| DNA replication factor Y [Anaerococcus lactolyticus ATCC 51172]
 gi|227236993|gb|EEI87008.1| DNA replication factor Y [Anaerococcus lactolyticus ATCC 51172]
          Length = 787

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 7/62 (11%)

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE----GFLRSKTS---LIQTIGRA 678
           +D++ GK D+L+G  ++ +GLD     LV I+ AD       F   +TS   L Q  GRA
Sbjct: 580 KDMKDGKIDILLGTQMIAKGLDFENVTLVGIISADLSLNVGDFSAQETSFQLLTQVAGRA 639

Query: 679 AR 680
            R
Sbjct: 640 GR 641


>gi|126696368|ref|YP_001091254.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9301]
 gi|126543411|gb|ABO17653.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9301]
          Length = 1169

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 49/246 (19%), Positives = 110/246 (44%), Gaps = 24/246 (9%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
           ++L+K I    ++ ++ G +   K+  +  + +   +  +++ PN+ +A +    F++  
Sbjct: 17  SELIKRISKNNELNII-GSSRYAKSIILNSIAKTEGKNILLICPNEEIAYKWIGYFESIN 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE--QIDRMRHSATRSLLERN----D 271
               +        YY P  ++P         SSIN+  +I+  + +    L+E+     +
Sbjct: 76  NKAVL--------YYPPTEHLPY--------SSINKSKEIEFSQLTVLSKLIEKEKNELN 119

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            ++ +  S    + +     +  + L+ G  +E KEL + L    Y ++++    G +  
Sbjct: 120 IVISTERSLQPHLVNKNLLIENKLNLQKGVQIEIKELANKLTLLGYTKENVTSSEGFWSR 179

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G+ I+I+P + E    R+  F N IE+I E+ P T + + ++  I+I      +  +  
Sbjct: 180 RGEIIDIYPVNNE-FPVRLEFFDNVIEKIREYDPHTQKTLESINNIEIIQAGFDLLIKDK 238

Query: 392 LNTAMK 397
           LN   K
Sbjct: 239 LNNLSK 244


>gi|119504065|ref|ZP_01626146.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2080]
 gi|119460068|gb|EAW41162.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2080]
          Length = 437

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TKR A  L E+L ++ I+   +H       R   + + + GK  VLV  ++  
Sbjct: 245 QVLVFSRTKRGANRLAEFLDKKGIQAAAIHGNKSQGARTRALSEFKSGKLRVLVATDIAA 304

Query: 644 EGLDIPECGLVAILD 658
            GLDI +   V  LD
Sbjct: 305 RGLDIEQLPQVVNLD 319


>gi|70607390|ref|YP_256260.1| hypothetical protein Saci_1657 [Sulfolobus acidocaldarius DSM 639]
 gi|68568038|gb|AAY80967.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
          Length = 443

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 8/90 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EI+   + G + V+V   +  EG+DIP+  +  I+     G   +K   IQ +GR  
Sbjct: 359 ERFEILSKFKEGNYRVIVASTVFDEGVDIPDAEIAIIM-----GGYGTKRQFIQRLGRIL 413

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRRE 709
           R    K +L  + +TK    A    ++RRE
Sbjct: 414 RGRGKKALL-IEIVTKGT--ADYRLSKRRE 440


>gi|327262891|ref|XP_003216257.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like [Anolis
           carolinensis]
          Length = 1021

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TK+ A+ +  +L +  I    +H + +  ER E ++  R GK  VLV  ++  
Sbjct: 468 RTMVFVETKKKADFIATFLCQEYIPTTSIHGDREQREREEALQCFRSGKCPVLVATSVAA 527

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ K I + D
Sbjct: 528 RGLDIENVQHVINFD-----LPSAIDEYVHRIGRTGRCGNTGKAISFFD 571


>gi|300714781|ref|YP_003739584.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299060617|emb|CAX57724.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 430

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   ED+  +L     RV  +  +V   +R+ I+ D   G  D+LV  ++  
Sbjct: 258 RAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVATDVAA 317

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNS 684
            GL IP    V   D   D+E ++      I   GRA  N +S
Sbjct: 318 RGLHIPAVTHVFNYDLPDDREDYVHR----IGRTGRAGANGHS 356


>gi|254496339|ref|ZP_05109224.1| DEAD/DEAH box helicase-like protein [Legionella drancourtii LLAP12]
 gi|254354441|gb|EET13091.1| DEAD/DEAH box helicase-like protein [Legionella drancourtii LLAP12]
          Length = 1403

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 10/120 (8%)

Query: 564 ARTQVED-VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER---NIRVRYMHSEVKTL 619
           A  Q+ D +Y+ I   A+Q    L+   T+R+AE    +L ER   ++ V +  S  K L
Sbjct: 253 ASNQIWDEIYNRIAQLAEQNRSTLIFANTRRVAERAAHHLGERLGKDLVVAHHGSLSKKL 312

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            R+E    L+ G+   LV    L  G+DI    LV  L     G  RS   ++Q +GRA 
Sbjct: 313 -RLEAETKLKNGELKALVATASLELGIDIGSVDLVCQL-----GSPRSIAVMLQRVGRAG 366


>gi|221064802|ref|ZP_03540907.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni KF-1]
 gi|220709825|gb|EED65193.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni KF-1]
          Length = 731

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 600 EYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           EYL E    + V  +HS + T E+  ++     G   VLV   ++  G+D+P   L+ I 
Sbjct: 543 EYLSETLPGVMVGLLHSRMPTAEKKAVMELFSAGVMGVLVSTTVIEVGVDVPNASLMVIE 602

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYA 690
            +++ G     + L Q  GR  R   +   V+LY+
Sbjct: 603 HSERFGL----SQLHQLRGRVGRGAAASACVLLYS 633


>gi|206563159|ref|YP_002233922.1| putative helicase [Burkholderia cenocepacia J2315]
 gi|198039199|emb|CAR55163.1| putative helicase [Burkholderia cenocepacia J2315]
          Length = 1503

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSE 615
           P+E   A    E VYD I   A      L+ V T+R AE +  +L +R  +  +   H  
Sbjct: 275 PLEPVMATDVWEQVYDRIAGLAAAHRTTLVFVNTRRTAERMARHLADRLGKDAIAAHHGS 334

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ G+  +LV    L  G+DI +  LV      + G  R     +Q +
Sbjct: 335 LAKEHRFDAEQRLKRGELKLLVATASLELGIDIGDVDLVC-----QVGSPRGIAPFLQRV 389

Query: 676 GRAARNVNS 684
           GR+  +V  
Sbjct: 390 GRSGHHVGG 398


>gi|254392467|ref|ZP_05007647.1| ATP-dependent DNA helicase RecG [Streptomyces clavuligerus ATCC
           27064]
 gi|197706134|gb|EDY51946.1| ATP-dependent DNA helicase RecG [Streptomyces clavuligerus ATCC
           27064]
          Length = 741

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +R+  +H  +   ++  ++R    G+ DVLV   ++  G+++P    + I+DAD+ G  
Sbjct: 557 GLRIGVLHGRMPPEDKDAVMRRFTAGEVDVLVATTVIEVGVNVPNATAMVIMDADRFGV- 615

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R     + L
Sbjct: 616 ---SQLHQLRGRVGRGSAPGLCL 635


>gi|50289935|ref|XP_447399.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661253|sp|Q6FQU5|DHH1_CANGA RecName: Full=ATP-dependent RNA helicase DHH1
 gi|49526709|emb|CAG60336.1| unnamed protein product [Candida glabrata]
          Length = 507

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 33/135 (24%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +A+ +T+  Y       Y H+ +K  +R ++  D R GK   LV  +LL  G+DI    +
Sbjct: 284 LAKKITDLGYS----CYYSHARMKQQDRNKVFHDFRQGKVRTLVCSDLLTRGIDIQAVNV 339

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-----------NVNSKVILY------------- 689
           V   D     F ++  + +  IGR+ R           N N +  LY             
Sbjct: 340 VINFD-----FPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAI 394

Query: 690 ADTITKSIQLAIDET 704
             TI KS+ +A D+T
Sbjct: 395 PATIDKSLYVAEDDT 409


>gi|50555013|ref|XP_504915.1| YALI0F02695p [Yarrowia lipolytica]
 gi|74632960|sp|Q6C347|FAL1_YARLI RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49650785|emb|CAG77720.1| YALI0F02695p [Yarrowia lipolytica]
          Length = 397

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + LT+ + + N  V  MH ++   +R  I+ + R
Sbjct: 256 DLYDTLTIT-----QAVIFCNTKKKVDWLTQQMKDNNFTVCSMHGDMAQKDRDSIMNEFR 310

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R
Sbjct: 311 SGRSRVLISTDVWARGIDVQQVSLVINYD-----LPPNRENYIHRIGRSGR 356


>gi|27697141|gb|AAH41785.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Homo sapiens]
 gi|119578004|gb|EAW57600.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52, isoform CRA_b [Homo
           sapiens]
          Length = 599

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  E   E +YE  I V  +H+E    +R   +   R GK  VL+   LL  G+D     
Sbjct: 424 RAKELFHELIYE-GINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVN 482

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILY 689
           LV   D     F  S    I  IGR  R  N  K I +
Sbjct: 483 LVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITF 515


>gi|332982568|ref|YP_004464009.1| RecQ family ATP-dependent DNA helicase [Mahella australiensis 50-1
           BON]
 gi|332700246|gb|AEE97187.1| ATP-dependent DNA helicase, RecQ family [Mahella australiensis 50-1
           BON]
          Length = 491

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 82/221 (37%), Gaps = 37/221 (16%)

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           SL  VDE+H  I Q    +R D+ R A   EY  R                   P  I  
Sbjct: 136 SLFAVDEAH-CISQWGHDFRPDYLRLAQAIEYTGR-------------------PPVIAT 175

Query: 529 SATPGSWELEQCQGIIVEQI--IRP----TGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
           +AT  S+  +     I++Q+  +RP    TG   P +         E   +   L     
Sbjct: 176 TATATSYVRDD----IIQQLKLVRPRCFVTGFERPNLRFIVKAVSSESQREAFILDTIGQ 231

Query: 583 LRI--LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           LR   ++   T++  E L   L    I     H+ +   +RI +  D   G+  V++  N
Sbjct: 232 LRFPGIIYTATRKATEMLATRLNRAGIIAAPYHAGLSDQQRIRVQDDFMQGRLPVILATN 291

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
               G+D P+ G V   +        S  +  Q  GRA R+
Sbjct: 292 AFGMGVDKPDVGFVLHYNMPA-----SLEAYYQEAGRAGRD 327


>gi|316978689|gb|EFV61638.1| DEAD-box ATP-dependent RNA helicase 57 [Trichinella spiralis]
          Length = 627

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  AE L        +++ Y+HS++   ER   I+  R G   +L+   L+  
Sbjct: 426 VLIFVQSKDRAEQLYNEFKFDEVKIDYIHSDLPKKERENTIKKFRRGDTWILICTELIGR 485

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           GLD     LV   D     F  S  S I  IG+   +V     LY
Sbjct: 486 GLDFKCVNLVINFD-----FPTSSISYIHRIGKVVCSVMPARRLY 525


>gi|296270955|ref|YP_003653587.1| DEAD/DEAH box helicase domain-containing protein [Thermobispora
           bispora DSM 43833]
 gi|296093742|gb|ADG89694.1| DEAD/DEAH box helicase domain protein [Thermobispora bispora DSM
           43833]
          Length = 618

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  + +   L +R   V  +H ++   +R + +R  R GK +VLV  ++   G+D+ +
Sbjct: 261 TKRACDMVANQLRDRGFAVAAVHGDLSQSQREQALRAFRNGKINVLVATDVAARGIDVDD 320

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D       + + + I  IGR  R   S V +
Sbjct: 321 VTHVINYD-----LPQDEKTYIHRIGRTGRAGRSGVAI 353


>gi|253751213|ref|YP_003024354.1| ATP-dependent DNA helicase [Streptococcus suis SC84]
 gi|253753114|ref|YP_003026254.1| ATP-dependent DNA helicase [Streptococcus suis P1/7]
 gi|253754936|ref|YP_003028076.1| ATP-dependent DNA helicase [Streptococcus suis BM407]
 gi|251815502|emb|CAZ51080.1| ATP-dependent DNA helicase [Streptococcus suis SC84]
 gi|251817400|emb|CAZ55136.1| ATP-dependent DNA helicase [Streptococcus suis BM407]
 gi|251819359|emb|CAR44751.1| ATP-dependent DNA helicase [Streptococcus suis P1/7]
 gi|292557775|gb|ADE30776.1| ATP-dependent DNA helicase RecG [Streptococcus suis GZ1]
 gi|319757485|gb|ADV69427.1| ATP-dependent DNA helicase [Streptococcus suis JS14]
          Length = 672

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +  DL  +  E+ + V  +H ++K  E+  I++  +  K ++LV   ++  G+++P   +
Sbjct: 485 LQSDLQAHFGEQ-VTVDLLHGKMKNDEKDAIMQAFKERKTNILVSTTVIEVGVNVPNATV 543

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T+S
Sbjct: 544 MVIMDADRFGL----SQLHQLRGRVGRGHKQSYAVLVANPKTES 583


>gi|227552689|ref|ZP_03982738.1| primosomal replication protein n [Enterococcus faecium TX1330]
 gi|227178176|gb|EEI59148.1| primosomal replication protein n [Enterococcus faecium TX1330]
          Length = 812

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 15/101 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+++ E+L E LY +    R +  +V T  R     +I++     + D+L+G  ++ +GL
Sbjct: 573 TQKVEEELRE-LYPQ---ARILRMDVDTTRRKGAHEQILQKFGAKEADILLGTQMIAKGL 628

Query: 647 DIPECGLVAILDADKE----GFLRSKTS---LIQTIGRAAR 680
           D PE  LV +L+AD       F  S+ +   L Q  GRA R
Sbjct: 629 DFPEVTLVGVLNADTSLNLPDFRSSEHTFQLLTQVSGRAGR 669


>gi|210635938|ref|ZP_03298631.1| hypothetical protein COLSTE_02570 [Collinsella stercoris DSM 13279]
 gi|210158299|gb|EEA89270.1| hypothetical protein COLSTE_02570 [Collinsella stercoris DSM 13279]
          Length = 421

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H ++    + E+I + R G+ DVLV   ++  G+D+P   ++ I + ++ G    
Sbjct: 235 RVEMLHGKMSARAKDEVIDEFRAGRIDVLVATTVVEVGVDVPNATVMLIENGERFGL--- 291

Query: 668 KTSLIQTIGRAARN 681
             +L Q  GR  R 
Sbjct: 292 -ATLHQLRGRVGRG 304


>gi|168491776|ref|ZP_02715919.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC0288-04]
 gi|183573939|gb|EDT94467.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC0288-04]
          Length = 1169

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 129/309 (41%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  +++      A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302



 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|315122206|ref|YP_004062695.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495608|gb|ADR52207.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 459

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 17/141 (12%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           K+    L   L ++   V  +H  +    RI+I+   + G   ++V  +L   GLDIP+ 
Sbjct: 255 KKDVASLCCALEKQGFSVCAIHGNMDQRSRIKILDSFKEGTIQLMVASDLAARGLDIPDV 314

Query: 652 GLVAILDADK--EGFLRSKTSLIQTIGRAARN------VNSKVILYADTITKSIQLAI-- 701
           G V   D     E ++      I   GRA R+      V S+ + Y D I K I+  I  
Sbjct: 315 GHVFNFDVPNRPENYIHR----IGRTGRAGRSGKAFTLVTSEDVKYIDAIEKLIEKKISW 370

Query: 702 ---DETTRRREKQLEHNKKHN 719
              D +T +  ++L+  ++ N
Sbjct: 371 LDGDLSTLQPSEKLDETQRSN 391


>gi|298707926|emb|CBJ30312.1| DEAD box helicase similar to CG7922-PA [Ectocarpus siliculosus]
          Length = 2654

 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++R    G+F+ LV   +  EGLDI E  L+   DA     L S   ++Q +GR  R   
Sbjct: 499 VVRAFFSGEFNCLVATCIAEEGLDIGEVDLIVSFDA-----LNSPVRMVQRMGRTGRKRA 553

Query: 684 SKVIL 688
            KV++
Sbjct: 554 GKVVV 558


>gi|281425153|ref|ZP_06256066.1| primosomal protein [Prevotella oris F0302]
 gi|281400745|gb|EFB31576.1| primosomal protein [Prevotella oris F0302]
          Length = 756

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           II D   G+ ++L+G  ++ +GLD     +V ILDAD          +  +   + Q  G
Sbjct: 551 IIDDFSAGRTNILIGTQMISKGLDFDNVSVVGILDADAMLNYPDFRAYEHAFMMMSQVSG 610

Query: 677 RAARNVNSKVILYADTITKSIQL-AIDETTR 706
           RA R     +++     TKS  L  ID+  R
Sbjct: 611 RAGRKGRQGLVILQ---TKSADLPVIDQVVR 638


>gi|282900454|ref|ZP_06308403.1| Transcription-repair coupling factor [Cylindrospermopsis
           raciborskii CS-505]
 gi|281194647|gb|EFA69595.1| Transcription-repair coupling factor [Cylindrospermopsis
           raciborskii CS-505]
          Length = 1171

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 31/184 (16%)

Query: 293 MIVQLKIGDSVEQ-KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           + +Q  +G S+EQ  E +++L    Y+R  +    G +   GD +++FP   E +  R+ 
Sbjct: 143 LTLQKDMGYSLEQFGEKITAL---GYERVSLVETEGQWSRRGDIVDVFPVACE-LPVRLE 198

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            FG+DIE+I EF P T +   +    KI  N   +TP       +  +K+          
Sbjct: 199 WFGDDIEKIREFDPSTQRSALD----KI--NQITLTPTSFAPIVLSALKDNALF------ 246

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                    +   ++  + E++E +G    +E   R+L      + P ++ +Y+P ++L+
Sbjct: 247 --------WQFSSQLDLNSEVIENSG----LEGSRRFLG--FAFDQPASILDYLPANTLV 292

Query: 472 FVDE 475
            +DE
Sbjct: 293 AIDE 296


>gi|256004524|ref|ZP_05429503.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum DSM 2360]
 gi|255991529|gb|EEU01632.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum DSM 2360]
          Length = 689

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           ++ RV  +H ++   E+ E+++    G+ D+LV   ++  G+++P   L+ + +A++ G 
Sbjct: 510 KDFRVGLLHGKMPAGEKEEVMQKFLKGEIDILVSTTVVEVGVNVPNATLMVVENAERFGL 569

Query: 665 LRSKTSLIQTIGRAARNVN-SKVILYADT---ITKSIQLAIDETT 705
                 L Q  GR  R  + S  ILY ++   I K     + ETT
Sbjct: 570 ----AQLHQLRGRVGRGPHQSYCILYNESKSQIAKERMKVMQETT 610


>gi|258565305|ref|XP_002583397.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237907098|gb|EEP81499.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 521

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTE      I  RY+ S+     R + +   R  K+ VL+   L  EG DIP    V + 
Sbjct: 176 LTEKFRSYGIDARYITSQTSKEIRTQELDAFRSQKYPVLLNCGLFTEGTDIPNIDCVVLA 235

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
                   RS+  L+Q IGR  R
Sbjct: 236 RP-----TRSRNLLVQMIGRGLR 253


>gi|193212054|ref|YP_001998007.1| ATP-dependent DNA helicase RecG [Chlorobaculum parvum NCIB 8327]
 gi|193085531|gb|ACF10807.1| ATP-dependent DNA helicase RecG [Chlorobaculum parvum NCIB 8327]
          Length = 710

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           +R+  +H ++   E+  ++   R G+ D+LVG  ++  G+D+P   ++ I  A++ G   
Sbjct: 527 LRLGLIHGKLPAEEKEAVMAAFRSGELDILVGTTVIEVGVDVPNATVMVIEHAERFGI-- 584

Query: 667 SKTSLIQTIGRAARNVN--SKVILYA 690
             + L Q  GR  R  +  S  ++YA
Sbjct: 585 --SQLHQLRGRVGRGTHRSSCYLVYA 608


>gi|118462257|ref|YP_880643.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium 104]
 gi|118163544|gb|ABK64441.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium 104]
          Length = 566

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 4/143 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  E++ E L  R      ++ ++   +R   +  L+ G  D+LV  ++   
Sbjct: 255 MIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVAAR 314

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+     V  L+ D      S    I   GRA R  +   +L+     + +  AI++ 
Sbjct: 315 GLDVERISHV--LNYDIPHDTESYVHRIGRTGRAGR--SGTALLFVSPRERHLLKAIEKA 370

Query: 705 TRRREKQLEHNKKHNINPQSVKE 727
           TR+   + E     ++N Q V +
Sbjct: 371 TRQPLTEAELPTVEDVNAQRVAK 393


>gi|92112736|ref|YP_572664.1| primosome assembly protein PriA [Chromohalobacter salexigens DSM
           3043]
 gi|91795826|gb|ABE57965.1| replication restart DNA helicase PriA [Chromohalobacter salexigens
           DSM 3043]
          Length = 740

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQ 208
           +Q   +A+L +G+  R    LL GVTGSGKT    ++IEA+    R A+V+ P   L  Q
Sbjct: 208 EQAGVLAELHEGL-DRYHPCLLHGVTGSGKTEVYLQLIEAVLARGRQALVLVPEIGLTPQ 266

Query: 209 LYSEFKNFF 217
             S F+  F
Sbjct: 267 TLSRFRQRF 275


>gi|126444895|ref|YP_001062824.1| ATP-dependent DNA helicase [Burkholderia pseudomallei 668]
 gi|126224386|gb|ABN87891.1| ATP-dependent DNA helicase [Burkholderia pseudomallei 668]
          Length = 1598

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612
           PPV +    A    E +YD I   A      L+ V T+RMAE    +L +R     +   
Sbjct: 256 PPVPLGPVMANDVWERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAH 315

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +
Sbjct: 316 HGSLAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFL 370

Query: 673 QTIGRAARNVNS 684
           Q +GR+  ++  
Sbjct: 371 QRVGRSGHHIGG 382


>gi|332968331|gb|EGK07402.1| excinuclease ABC subunit C [Kingella kingae ATCC 23330]
          Length = 653

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 24/30 (80%)

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           LK L KQM  AAD+L+FE AA++RD+I+ L
Sbjct: 248 LKDLEKQMFQAADDLDFETAAKLRDQIQAL 277


>gi|315282826|ref|ZP_07871147.1| primosomal protein N' [Listeria marthii FSL S4-120]
 gi|313613528|gb|EFR87351.1| primosomal protein N' [Listeria marthii FSL S4-120]
          Length = 686

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           T+++ E LT+ + E R IR+    +  K     +++   R  + D+L+G  ++ +GLD P
Sbjct: 447 TQKVEESLTKLIPEARVIRMDVDTTRTKGAHE-KLLNSFRNHEADILLGTQMIAKGLDFP 505

Query: 650 ECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           +  LV +L+AD    L       R+   L Q  GRA R+
Sbjct: 506 DITLVGVLNADTMLHLPDFRASERTFQLLTQVSGRAGRH 544


>gi|302348705|ref|YP_003816343.1| type III restriction enzyme, res subunit [Acidilobus saccharovorans
           345-15]
 gi|302329117|gb|ADL19312.1| type III restriction enzyme, res subunit [Acidilobus saccharovorans
           345-15]
          Length = 446

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 15/143 (10%)

Query: 564 ARTQVEDVYDEINLAAQQ-----GLRILLTVLTKRMAEDLTE-----YLYERNIRVRYMH 613
           AR  VE  Y+ + +A         LR LL   + R     T      Y   R   V  + 
Sbjct: 293 ARDAVEAWYESVRIAVNSRAKIDSLRKLLAEYSDRKVLIFTRDTEMAYRISREFLVPAVT 352

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            +    ER++I+   R G + V+V  ++  EG+D+P+  +  ++     G   +    IQ
Sbjct: 353 YKTPKQERLKILELFRKGAYKVIVASSVFDEGVDVPDASVAIVV-----GGYGTPRQFIQ 407

Query: 674 TIGRAARNVNSKVILYADTITKS 696
            +GR  R    K  L  + +TK 
Sbjct: 408 RLGRVLRPAEGKRALLIELVTKG 430


>gi|301301237|ref|ZP_07207392.1| DEAD/DEAH box helicase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851113|gb|EFK78842.1| DEAD/DEAH box helicase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 445

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 15/101 (14%)

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIE ++ +R  ++  L+   +L  G+  PE  L+ +L AD   F  S ++L+Q  GR  R
Sbjct: 347 RIEKVQKMRNKEYTYLITTTILERGVTFPEIDLL-VLGADNSVF--STSALVQIAGRVGR 403

Query: 681 NV---NSKVILYADTITKSIQLAIDETTRRREKQLEH-NKK 717
           +V   +  VI   D  T+ ++ A        +KQ+E  NKK
Sbjct: 404 SVSRPDGDVIFICDRYTRKVKDA--------QKQIEFLNKK 436


>gi|322434362|ref|YP_004216574.1| ATP-dependent DNA helicase RecG [Acidobacterium sp. MP5ACTX9]
 gi|321162089|gb|ADW67794.1| ATP-dependent DNA helicase RecG [Acidobacterium sp. MP5ACTX9]
          Length = 779

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/100 (22%), Positives = 49/100 (49%), Gaps = 6/100 (6%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           + +RV  +H  +   ++   +R  + G+ DVL+   ++  G+D+P   ++ I  A++ G 
Sbjct: 594 QGLRVGLLHGRMSADDKEVAMRRFQRGETDVLIATTVIEVGVDVPNASVMVIDHAERFGL 653

Query: 665 LRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAID 702
                 + Q  GR  R       +++  D +++S +L +D
Sbjct: 654 ----AQMHQLRGRVGRGAAKSYCILMTGDKVSESAELRLD 689


>gi|294508790|ref|YP_003572849.1| conserved hypothetical protein containing helicase domain
           [Salinibacter ruber M8]
 gi|294345119|emb|CBH25897.1| conserved hypothetical protein containing helicase domain
           [Salinibacter ruber M8]
          Length = 581

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERN--IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++L+T ++ R A D+ +++  R   +    +  +V   ER E +   R G+ DV+V +++
Sbjct: 315 QMLVTCMSNRHAADVLDFMERRYGWLSATRIGQDVPRDEREERLEAYRQGEVDVMVQVDM 374

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           + EG DI    ++A LD      + +++  +Q I R  R
Sbjct: 375 IGEGTDIKTISVIAKLD-----LVSARSKTLQQIFRGMR 408


>gi|229031934|ref|ZP_04187921.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1271]
 gi|228729398|gb|EEL80388.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1271]
          Length = 436

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 66/125 (52%), Gaps = 9/125 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA+ + + L ER ++V  +H ++   +R ++++ +R  +F  +V  +L   G+DI  
Sbjct: 255 TKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI-TKSIQLAIDETTRRRE 709
            G+  +++ +    L      +  +GR AR  +S +   A TI   + + A+D   ++R 
Sbjct: 314 -GISHVINYELPSDL---DFFVHRVGRTARAGHSGI---AVTIYDPANEEALDSLEKQRH 366

Query: 710 KQLEH 714
            + +H
Sbjct: 367 IEFKH 371


>gi|217418824|ref|ZP_03450331.1| putative ATP-dependent helicase lhr [Burkholderia pseudomallei 576]
 gi|217398128|gb|EEC38143.1| putative ATP-dependent helicase lhr [Burkholderia pseudomallei 576]
          Length = 1598

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612
           PPV +    A    E +YD I   A      L+ V T+RMAE    +L +R     +   
Sbjct: 256 PPVPLGPVMANDVWERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAH 315

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +
Sbjct: 316 HGSLAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFL 370

Query: 673 QTIGRAARNVNS 684
           Q +GR+  ++  
Sbjct: 371 QRVGRSGHHIGG 382


>gi|198282679|ref|YP_002219000.1| transcription-repair coupling factor [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198247200|gb|ACH82793.1| transcription-repair coupling factor [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 1116

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 9/116 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +RMA  L   L E   R+R  H ++   E   ++ D    +FD+L+   ++  G+D P  
Sbjct: 792 ERMAATLRRLLPE--ARLRVAHGQMPEGELEAVMLDFYHQRFDILLCTTIIESGIDNPHA 849

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
             + I  ADK G       L Q  GR  R+       YA   T  ++   D+  RR
Sbjct: 850 NTILINRADKFGL----AQLHQLRGRVGRSHQRA---YAYLFTPDLRAMSDDARRR 898


>gi|183984161|ref|YP_001852452.1| cold-shock DEAD-box protein, DeaD [Mycobacterium marinum M]
 gi|183177487|gb|ACC42597.1| cold-shock DEAD-Box protein, DeaD [Mycobacterium marinum M]
          Length = 571

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 4/143 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  E++ E L  R      ++ ++   +R   I  LR G  D+LV  ++   
Sbjct: 255 MIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTITALRDGGIDILVATDVAAR 314

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+     V  L+ D      S    I   GRA R  +   +L+     + +   I++ 
Sbjct: 315 GLDVERISHV--LNYDIPHDTESYVHRIGRTGRAGR--SGAALLFVSPRERHLLKLIEKA 370

Query: 705 TRRREKQLEHNKKHNINPQSVKE 727
           TR+   + E     ++N Q V +
Sbjct: 371 TRQTLTEAELPTVEDVNAQRVAK 393


>gi|148825298|ref|YP_001290051.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittEE]
 gi|148715458|gb|ABQ97668.1| ATP-dependent RNA helicase [Haemophilus influenzae PittEE]
          Length = 439

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++  
Sbjct: 250 RGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D        S  + +  IGR AR
Sbjct: 310 RGIDIDDVSHVMNFD-----LPYSADTYLHRIGRTAR 341


>gi|144898256|emb|CAM75120.1| ATP-dependent DNA helicase recG [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 693

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 6/90 (6%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H ++K L + +++ D   G+  VLV   ++  G+++PE  ++ I  A++ G     
Sbjct: 511 VGLVHGKMKGLAKDKVMADFAAGQLSVLVATTVIEVGVNVPEATIMVIEHAERFGL---- 566

Query: 669 TSLIQTIGRAAR--NVNSKVILYADTITKS 696
             L Q  GR  R    +S ++LY   ++++
Sbjct: 567 AQLHQLRGRVGRGSGASSCLLLYGAPLSEN 596


>gi|1772498|emb|CAA71348.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
          Length = 577

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 15/102 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+R+ E+LT+ L       R +  +V T  R     +++     GK D+L+G  ++ +GL
Sbjct: 336 TQRVEEELTKVL----PSARVIRMDVDTTSRKGAHEKLLSAFGEGKADILLGTQMIAKGL 391

Query: 647 DIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           D P   LV +L AD    +       ++   L Q  GRA R+
Sbjct: 392 DFPNVTLVGVLSADTTLHIPDFRSAEKTFQLLTQVSGRAGRH 433



 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 152 DQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAA 207
           +Q AA   + + + S E KV LL GVTGSGKT    + IE   A  + AIV+ P   L  
Sbjct: 42  EQRAAFEPIRETLDSDEHKVFLLHGVTGSGKTEIYLQSIEKVLAKGKEAIVLVPEISLTP 101

Query: 208 QLYSEFKNFF 217
           Q+ + FK  F
Sbjct: 102 QMVNRFKGRF 111


>gi|15902050|ref|NP_357600.1| transcription-repair coupling factor [Streptococcus pneumoniae R6]
 gi|116516151|ref|YP_815427.1| transcription-repair coupling factor [Streptococcus pneumoniae D39]
 gi|15457534|gb|AAK98810.1| Transcription-repair coupling factor [Streptococcus pneumoniae R6]
 gi|116076727|gb|ABJ54447.1| transcription-repair coupling factor [Streptococcus pneumoniae D39]
          Length = 1169

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 129/309 (41%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  +++      A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302



 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|329122297|ref|ZP_08250885.1| ATP-dependent RNA helicase SrmB [Haemophilus aegyptius ATCC 11116]
 gi|327473858|gb|EGF19275.1| ATP-dependent RNA helicase SrmB [Haemophilus aegyptius ATCC 11116]
          Length = 444

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++  
Sbjct: 250 RGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D        S  + +  IGR AR
Sbjct: 310 RGIDIDDVSHVMNFD-----LPYSADTYLHRIGRTAR 341


>gi|326922819|ref|XP_003207642.1| PREDICTED: interferon-induced helicase C domain-containing protein
           1-like [Meleagris gallopavo]
          Length = 1001

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 13/83 (15%)

Query: 604 ERNIRVRYM-----HSEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E  I+  Y+     +SE K +   E+ E+I   R G  ++L+   +  EGLDI EC +V 
Sbjct: 720 EVGIKAHYLIGAGHNSETKPMTQNEQREVIDKFRGGSINLLIATTVAEEGLDIKECNIVI 779

Query: 656 ILDADKEGFLRSKTSLIQTIGRA 678
                + G + ++ +++Q  GRA
Sbjct: 780 -----RYGLVTNEIAMVQARGRA 797


>gi|315604272|ref|ZP_07879338.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313978|gb|EFU62029.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 699

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+   E+++  L  R  R   +  +V   ER  ++  L+ G  DVLV  ++   G
Sbjct: 289 IVFVRTRADVEEVSLELSARGFRAAGISGDVAQTERERMVERLKTGALDVLVATDVAARG 348

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LD+    LV   D  +E       + +  IGR  R
Sbjct: 349 LDVERISLVVNFDVPRE-----PEAYVHRIGRTGR 378


>gi|303230783|ref|ZP_07317530.1| ATP-dependent DNA helicase RecG [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514543|gb|EFL56538.1| ATP-dependent DNA helicase RecG [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 680

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 9/82 (10%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQ-LLLGVTGSGKT----FTMAKVIEAMQRPAIVMAP 201
           +  +GDQ  A+ ++ + +     +Q LL G  GSGKT     ++ K +E   + A++MAP
Sbjct: 253 FQLTGDQERAVTEISQDMQDERPMQRLLQGDVGSGKTVVATLSLVKAVENGYQ-AVIMAP 311

Query: 202 NKILAAQLY---SEFKNFFPHN 220
            +ILA Q Y   +EF    P N
Sbjct: 312 TEILATQHYEGITEFCKTLPIN 333


>gi|297620744|ref|YP_003708881.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044]
 gi|297376045|gb|ADI37875.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044]
          Length = 439

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 29/188 (15%)

Query: 514 RFEEWNCLRPTTIVVSATPGSWEL----EQCQGIIVEQIIRPTGLVDPPVEI--RSARTQ 567
           R  +   + P   + +ATP S +        QG ++    R   L++ P++I   S +T+
Sbjct: 159 RMLDMGFIEPVEKIAAATPSSRQTLLFSATMQGSVLNLSNR---LLNEPMDIVIHSEKTK 215

Query: 568 VEDVYDEINL--AAQQGLRILLTVL-------------TKRMAEDLTEYLYERNIRVRYM 612
            E++  +++     Q   ++L  +L             TKR A  L   L+++ +    +
Sbjct: 216 HENITQKLHYVDGLQHKNQLLEHILNDDVVKHAIVFTSTKRHASQLVFELHDKGLLAGAL 275

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H ++   +R   I  LR GK  VLV  ++   G+D+     V   D       R+    +
Sbjct: 276 HGDMSQRQRSRTIAQLRTGKIKVLVATDVAARGIDVQNITHVINFD-----LPRNVEDYV 330

Query: 673 QTIGRAAR 680
             IGR  R
Sbjct: 331 HRIGRTGR 338


>gi|257438994|ref|ZP_05614749.1| primosomal proteiN n' [Faecalibacterium prausnitzii A2-165]
 gi|257198579|gb|EEU96863.1| primosomal proteiN n' [Faecalibacterium prausnitzii A2-165]
          Length = 728

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 152 DQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAA 207
           +Q AA   LL G+  +     LL GVTGSGKT    K+IE    M R A+V+ P   L  
Sbjct: 215 EQQAAYDALLPGLEDAAPHSALLYGVTGSGKTLVFLKLIEHCLQMGRRALVLVPEISLTP 274

Query: 208 QLYSEFKNFF 217
           Q+    K+ F
Sbjct: 275 QMILRLKSQF 284


>gi|225712874|gb|ACO12283.1| Eukaryotic initiation factor 4A-II [Lepeophtheirus salmonis]
 gi|290561827|gb|ADD38311.1| Eukaryotic initiation factor 4A-II [Lepeophtheirus salmonis]
          Length = 413

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R    LTE +  ++  V  MH E+   ER  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 288 TRRKVCWLTEKMGLKHFTVSSMHGEMSQEEREVIMREFRSGSSRVLITTDLLARGIDVQQ 347

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D   +KE ++
Sbjct: 348 ISLVINYDLPVNKENYI 364


>gi|223992625|ref|XP_002285996.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977311|gb|EED95637.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 495

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 2/105 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   TK  A  L        I+   +H  +  ++R+E +   R G  DVL+  +L  
Sbjct: 275 RVIVFFDTKSAAHRLMIVCGLCGIKCTELHGNLTQVQRLEALEAFREGNVDVLLATDLAA 334

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            GLDIP  G+  +++ +    + +    I    RA R  NS  ++
Sbjct: 335 RGLDIP--GVECVINFEMPSQVDTYVHRIGRTARAGRGGNSCTLI 377


>gi|169833013|ref|YP_001693440.1| transcription-repair coupling factor [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168995515|gb|ACA36127.1| transcription-repair coupling factor [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 1169

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 129/309 (41%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  +++      A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|74006738|ref|XP_861475.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 9 [Canis familiaris]
          Length = 663

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 11/121 (9%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 433 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGR------AARNV 682
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G+        RN+
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGKCLVTFDGLRNI 551

Query: 683 N 683
           N
Sbjct: 552 N 552


>gi|74317674|ref|YP_315414.1| transcription-repair coupling factor [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057169|gb|AAZ97609.1| transcription-repair coupling factor [Thiobacillus denitrificans
           ATCC 25259]
          Length = 1146

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           + M E L + L E  IRV   H ++   E  +++RD    ++D+L+   ++  G+DIP  
Sbjct: 812 QNMRERLEKLLPEARIRVG--HGQMSERELEQVMRDFYQQRYDILLCTTIIETGIDIPTA 869

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 870 NTILINRADKFGL----AQLHQLRGRVGRS 895


>gi|15834779|ref|NP_296538.1| primosome assembly protein PriA [Chlamydia muridarum Nigg]
 gi|270284947|ref|ZP_06194341.1| primosome assembly protein PriA [Chlamydia muridarum Nigg]
 gi|270288973|ref|ZP_06195275.1| primosome assembly protein PriA [Chlamydia muridarum Weiss]
 gi|301336345|ref|ZP_07224547.1| primosome assembly protein PriA [Chlamydia muridarum MopnTet14]
 gi|14195052|sp|Q9PLE5|PRIA_CHLMU RecName: Full=Primosomal protein N'; AltName: Full=ATP-dependent
           helicase priA; AltName: Full=Replication factor Y
 gi|7190196|gb|AAF39035.1| primosomal protein N` [Chlamydia muridarum Nigg]
          Length = 753

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 36/169 (21%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVI---EAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           I ++ +  LL GVTGSGKT    +VI    ++ +  I++ P   L  Q  S FK    H 
Sbjct: 230 ITTKFQTCLLFGVTGSGKTEVYLQVIRKARSLGKSVILLVPEVALTIQTLSFFKM---HF 286

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
             E  V +Y   + E    RT T+               H A R L+     I++   S 
Sbjct: 287 GAEVGVLHYKLSESE----RTQTW---------------HKAARGLIN----IIIGPRSA 323

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           I+    +++   +IV  +   + +Q +L        Y+ +D+ ++RG F
Sbjct: 324 IF--CPMQNLGLIIVDEEHDGAYKQSDL-----PPFYQARDVAVMRGKF 365


>gi|311276166|ref|XP_003135075.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Sus
           scrofa]
          Length = 662

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 433 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N +
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 548


>gi|308177940|ref|YP_003917346.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745403|emb|CBT76375.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 538

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +G  I+ T  TKR A  L++ L +R      +H ++    R + ++  R GK ++LV
Sbjct: 275 AEGRGKTIIFT-QTKRSAARLSDELIDRGFNAGSLHGDLGQGAREQALKAFRSGKVEILV 333

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             ++   G+D+ +   V  L    +     + + +  +GR  R  N+   +
Sbjct: 334 ATDVAARGIDVDDVTHVVNLQCPDD-----ENTYLHRVGRTGRAGNTGTAV 379


>gi|264680588|ref|YP_003280498.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni CNB-2]
 gi|262211104|gb|ACY35202.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni CNB-2]
          Length = 725

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 600 EYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           EYL E    + V  +HS + T E+  ++     G   VLV   ++  G+D+P   L+ I 
Sbjct: 537 EYLSEMLPGVMVGLLHSRMPTAEKKAVMELFSAGVMGVLVSTTVIEVGVDVPNASLMVIE 596

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYA 690
            +++ G     + L Q  GR  R   +   V+LY+
Sbjct: 597 HSERFGL----SQLHQLRGRVGRGAAASACVLLYS 627


>gi|167828373|ref|ZP_02459844.1| putative ATP-dependent helicase lhr [Burkholderia pseudomallei 9]
          Length = 596

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSE 615
           P+E   A    E +YD I   A      L+ V T+RMAE    +L +R     +   H  
Sbjct: 259 PLEPVMANDVWERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAHHGS 318

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +Q +
Sbjct: 319 LAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFLQRV 373

Query: 676 GRAARNVNS 684
           GR+  ++  
Sbjct: 374 GRSGHHIGG 382


>gi|156848475|ref|XP_001647119.1| hypothetical protein Kpol_1036p3 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160385736|sp|A7TEF4|FAL1_VANPO RecName: Full=ATP-dependent RNA helicase FAL1
 gi|156117803|gb|EDO19261.1| hypothetical protein Kpol_1036p3 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 399

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + L+  L + N  V  MH ++K  +R +++ D R
Sbjct: 258 DLYDSLTIT-----QCVIFCNTKKKVDWLSAKLTQSNFAVVSMHGDMKQEDRNKVMSDFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D  +        + I  IGR+ R
Sbjct: 313 SGHSRVLISTDVWARGIDVQQVSLVINYDIPE-----IMENYIHRIGRSGR 358


>gi|146419877|ref|XP_001485898.1| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 397

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD  NL   Q +   +   TK     L   + + N  V  MH ++K  +R  I+++ R
Sbjct: 256 DLYD--NLTITQAV---IFCNTKAKVNWLAGQMRKSNFTVAAMHGDMKQEDRDSIMKEFR 310

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D   DKE +       +  IGR+ R
Sbjct: 311 SGSTRVLISTDVWARGIDVQQVSLVINYDLPLDKENY-------VHRIGRSGR 356


>gi|113954884|ref|YP_730486.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CC9311]
 gi|113882235|gb|ABI47193.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CC9311]
          Length = 857

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 21/186 (11%)

Query: 521 LRPTTIVVSATP--GSWELEQCQGIIVEQIIR-PTGLVDPPVEIRSART-QVEDVYDEIN 576
           L+P  + ++ATP   +  L     + V QI   P G    P+  R  ++ + E+ Y+ I 
Sbjct: 578 LQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRT--PIRTRVVKSSEREEAYELIR 635

Query: 577 LAAQQGLR--ILLTVLTK------RMAEDLTEYLYER---NIRVRYMHSEVKTLERIEII 625
               QG R  ++L ++ +      R A D+   L E       V  +H  + + E+  +I
Sbjct: 636 EQVSQGQRTYVVLPLVEESEKVDLRSAVDVHRQLSEEVFPEFSVGLLHGRLASAEKQAVI 695

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D   G   +LV   ++  G+D+PE  ++ I  AD+ G       L Q  GR  R   + 
Sbjct: 696 ADFAAGTTQILVSTTVVEVGVDVPEASVMVIDHADRFGL----AQLHQLRGRVGRGAAAS 751

Query: 686 VILYAD 691
             L  +
Sbjct: 752 YCLLVN 757


>gi|71083684|ref|YP_266404.1| ATP-dependent DNA helicase recG [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062797|gb|AAZ21800.1| ATP-dependent DNA helicase recG [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 683

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 6/80 (7%)

Query: 144 QTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKTF----TMAKVIEAMQRPAIV 198
           + ++  + DQ  ++  + K ++S+ K+ +LL G  GSGKT     +   VI +  + A+ 
Sbjct: 258 KLNFTLTNDQKISLGDINKDLNSKSKMFRLLQGDVGSGKTIVALISSLNVINSGFQVAL- 316

Query: 199 MAPNKILAAQLYSEFKNFFP 218
           MAP +ILA Q Y+  K  FP
Sbjct: 317 MAPTEILARQHYTLAKKLFP 336


>gi|325107645|ref|YP_004268713.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305]
 gi|324967913|gb|ADY58691.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 701

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +++V  +H ++   ++  ++ D R G+  +LV  +++  G+D+P   L+ ILDA + G  
Sbjct: 519 DLKVGLVHGQMDRRQQQLVMADFREGEIQMLVATSVIEVGVDVPNASLMVILDAHQFGL- 577

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R 
Sbjct: 578 ---SQLHQLRGRIGRG 590


>gi|301301069|ref|ZP_07207229.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851339|gb|EFK79063.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 492

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++    R+ ++R  + G  D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 307 SGVTHVYNYD---IPQDPESYVHRIGRTGR 333


>gi|251783089|ref|YP_002997392.1| primosome assembly protein PriA [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391719|dbj|BAH82178.1| primosomal protein N' [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 794

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILA 206
           +  Q +A+ ++++ I    K  L+ G+TGSGKT     +IEA+    + AIV+ P   L 
Sbjct: 259 NAQQASAVTEIVEQIGKPSKPFLIEGITGSGKTEVYLHIIEAVLKQDKTAIVLVPEISLT 318

Query: 207 AQLYSEFKNFF 217
            Q+ S F + F
Sbjct: 319 PQMTSRFISRF 329


>gi|167819992|ref|ZP_02451672.1| putative ATP-dependent helicase lhr [Burkholderia pseudomallei 91]
          Length = 512

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSE 615
           P+E   A    E +YD I   A      L+ V T+RMAE    +L +R     +   H  
Sbjct: 259 PLEPVMANDVWERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAHHGS 318

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +Q +
Sbjct: 319 LAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFLQRV 373

Query: 676 GRAARNVNS 684
           GR+  ++  
Sbjct: 374 GRSGHHIGG 382


>gi|167386794|ref|XP_001737905.1| ATP-dependent helicase SGS1 [Entamoeba dispar SAW760]
 gi|165899114|gb|EDR25795.1| ATP-dependent helicase SGS1, putative [Entamoeba dispar SAW760]
          Length = 1162

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 9/130 (6%)

Query: 564 ARTQVEDVYDEINLAAQ---QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
            R + + V DEI    +   +G   ++  L+++   D+ + L +R I+ +Y H+ + T E
Sbjct: 646 VRPKTKGVIDEIEEMIKRKYKGQSGIIYCLSQKNTMDVAQELNKRGIKSKYYHAGMDTKE 705

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R ++ ++   G+F+V+        G+D P+   V           +S     Q  GRA R
Sbjct: 706 RTKVQKEWCDGEFNVICATIAFGMGIDKPDVRFVI-----HHSLPKSLEGYYQESGRAGR 760

Query: 681 NVN-SKVILY 689
           +   +  ILY
Sbjct: 761 DGEPADCILY 770


>gi|124004047|ref|ZP_01688894.1| primosomal protein N' [Microscilla marina ATCC 23134]
 gi|123990626|gb|EAY30106.1| primosomal protein N' [Microscilla marina ATCC 23134]
          Length = 837

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II+D    + ++LVG  +L +GLD     LV I DAD+           R+   + Q  
Sbjct: 629 QIIQDFENQQIEILVGTQMLSKGLDFDNVSLVGIFDADRIINFPDFRSHERAFQIMTQVS 688

Query: 676 GRAARNVNSKVILY--ADT 692
           GRA R     ++L   ADT
Sbjct: 689 GRAGRKDKPGLVLIQTADT 707


>gi|18978274|ref|NP_579631.1| DNA repair helicase putative [Pyrococcus furiosus DSM 3638]
 gi|18894095|gb|AAL82026.1| DNA repair helicase putative [Pyrococcus furiosus DSM 3638]
          Length = 447

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           YL  R   +  +  +    ER EI+R  R G +  +V   +L EG+D+P+  +  I+   
Sbjct: 342 YLISRKFLIPAITHKTYKAERSEILRKFRKGAYKAIVSSQVLDEGIDVPDASVGVIISGT 401

Query: 661 KEGFLRSKTSLIQTIGRAARNV--NSKVILY 689
                 S    IQ +GR  R      K ILY
Sbjct: 402 G-----SSREFIQRLGRILRPAPGKEKAILY 427


>gi|332113313|gb|AEE02033.1| X-linked DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Sus scrofa]
          Length = 661

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 433 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N +
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 548


>gi|331695835|ref|YP_004332074.1| ATP-dependent DNA helicase, RecQ family [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950524|gb|AEA24221.1| ATP-dependent DNA helicase, RecQ family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 701

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           LT + AE++ E+L ER   V     +     R+    DL   +   LV  + L  G D P
Sbjct: 257 LTIQAAEEVAEFLRERGYAVASYTGKTDPEARLAAEADLLGNRVKALVATSALGMGFDKP 316

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVIL 688
           + G V  L A       S  +  Q IGRA R ++ ++V+L
Sbjct: 317 DLGFVVHLGAPA-----SPVAYYQQIGRAGRALDHAEVVL 351


>gi|312863149|ref|ZP_07723387.1| primosomal protein N' [Streptococcus vestibularis F0396]
 gi|311100685|gb|EFQ58890.1| primosomal protein N' [Streptococcus vestibularis F0396]
          Length = 797

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  + LTE L E  +    + +  K     +++     G+ D+L+G  ++ +GLD P 
Sbjct: 558 TQKAYDQLTELLPEARVIRMDVDTTRKKGAHEKLLETFGSGQADILLGTQMIAKGLDFPN 617

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
             LV +L+AD    L       R+   L Q  GRA R
Sbjct: 618 VTLVGVLNADTSLNLPDFRSAERTFQLLTQVAGRAGR 654


>gi|310659145|ref|YP_003936866.1| recg [Clostridium sticklandii DSM 519]
 gi|308825923|emb|CBH21961.1| RecG [Clostridium sticklandii]
          Length = 685

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 5/87 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           + E L+E ++ +  ++  +H ++K  E+ EI+     G+ D+L+   ++  G+++P   +
Sbjct: 496 LFEKLSESVF-KGYKLALLHGKMKAQEKQEIMDAFSSGRIDILISTTVIEVGVNVPNSSV 554

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR 680
           + I DA + G     + L Q  GR  R
Sbjct: 555 MIIQDAQRFGL----SQLHQLRGRVGR 577


>gi|300863472|ref|ZP_07108427.1| ATP-dependent DNA helicase recG [Oscillatoria sp. PCC 6506]
 gi|300338535|emb|CBN53569.1| ATP-dependent DNA helicase recG [Oscillatoria sp. PCC 6506]
          Length = 694

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H  + + E+ E ++  R  K  +LV   ++  G+D+P   ++ I  AD+ G    
Sbjct: 516 RVGLLHGRMTSAEKDEALKSFRDNKTQILVSTTVVEVGVDVPNATVILIDHADRFGL--- 572

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
              L Q  GR  R  +    L  DT
Sbjct: 573 -AQLHQLRGRVGRGSHRSYCLLLDT 596


>gi|269215535|ref|ZP_06159389.1| transcription-repair coupling factor [Slackia exigua ATCC 700122]
 gi|269131022|gb|EEZ62097.1| transcription-repair coupling factor [Slackia exigua ATCC 700122]
          Length = 1150

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 9/161 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSE 615
           PVE+       + V D I    Q+G ++       R  ED  +++ +     R+   H +
Sbjct: 793 PVEVHVGEWDPDIVSDAIRREMQRGGQVYYVSNRVRTIEDALDHVRDAAPEARIGAAHGK 852

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +   E   ++ D   G  DVLV   ++  G+D P    + I D+ + G       + Q  
Sbjct: 853 MGKEELEAVMEDFAAGAIDVLVATTIIESGIDNPHTNTLVIEDSQRLGL----AQMYQLK 908

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
           GR  R   S +  YA  +  S     +E T R +   EH +
Sbjct: 909 GRVGR---SSLQAYAYFMFPSEVPLTEEATARLQAIDEHRE 946



 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           GTF V G ++++FP        RV  FG++++ I    P TGQ I ++ +  I+    Y
Sbjct: 181 GTFCVRGGTVDVFPG-TGVFPVRVDFFGDEMDGIRRVVPGTGQSISSLASFSIFPVREY 238


>gi|257899947|ref|ZP_05679600.1| primosomal protein N [Enterococcus faecium Com15]
 gi|257837859|gb|EEV62933.1| primosomal protein N [Enterococcus faecium Com15]
          Length = 802

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 15/101 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+++ E+L E LY +    R +  +V T  R     +I++     + D+L+G  ++ +GL
Sbjct: 563 TQKVEEELRE-LYPQ---ARILRMDVDTTRRKGAHEQILQKFGAKEADILLGTQMIAKGL 618

Query: 647 DIPECGLVAILDADKE----GFLRSKTS---LIQTIGRAAR 680
           D PE  LV +L+AD       F  S+ +   L Q  GRA R
Sbjct: 619 DFPEVTLVGVLNADTSLNLPDFRSSEHTFQLLTQVSGRAGR 659


>gi|227501650|ref|ZP_03931699.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
 gi|306835824|ref|ZP_07468821.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
 gi|227077675|gb|EEI15638.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
 gi|304568298|gb|EFM43866.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
          Length = 623

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 9/151 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++   TK   E++ E L +R      ++ ++   +R   +  L+ G+ D+LV  ++   
Sbjct: 297 IIVFCRTKHETEEVAEALRDRGYSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAAR 356

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  + + IL+     + +  +I+
Sbjct: 357 GLDVERITHVVNFDIPNDTESYVHR----IGRTGRAGR--SGEAILFVTPRERRMLRSIE 410

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
             T  R ++++      +N +  KEK  + I
Sbjct: 411 RVTNARLEEMDLPSVDEVN-EKRKEKFAQAI 440


>gi|224437109|ref|ZP_03658090.1| ATP-dependent DNA helicase RecG [Helicobacter cinaedi CCUG 18818]
 gi|313143579|ref|ZP_07805772.1| ATP-dependent DNA recombinase RecG [Helicobacter cinaedi CCUG
           18818]
 gi|313128610|gb|EFR46227.1| ATP-dependent DNA recombinase RecG [Helicobacter cinaedi CCUG
           18818]
          Length = 653

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 116 LLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSR-EKVQLLL 174
           LL   KI  P R    N    DI  F     +  +  Q  AI  +   + S     +L++
Sbjct: 207 LLSRKKIQAPSRFICDN----DIDSFLQSLPFTLTQGQQNAIKDIRHDLQSPIASRRLIM 262

Query: 175 GVTGSGKTFTM-AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           G  G GK+  + + V+ A    +++MAP  ILA QLY E K   P
Sbjct: 263 GDVGCGKSVVIFSAVMCAYPHASVLMAPTTILATQLYEEAKRLLP 307


>gi|226494636|ref|NP_001147596.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays]
 gi|195612416|gb|ACG28038.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays]
          Length = 768

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 5/116 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   +++   L +R  R+  +H +     R+E ++  + G + VLV  ++   
Sbjct: 467 VLVFASKKARVDEIERELNQRGFRIAALHGDKDQASRMETLQKFKSGTYHVLVATDVAAR 526

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           GLDI     V   D  KE  +      I  IGR  R  +     Y     K  + A
Sbjct: 527 GLDIKSIKTVVNFDIAKEMDMH-----IHRIGRTGRAGDKDGTAYTLITQKEARFA 577


>gi|254442343|ref|ZP_05055819.1| Helicase associated domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198256651|gb|EDY80959.1| Helicase associated domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 1311

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
            R  +++ +++T +R  ++ D       +L     L EG+D+P   +VA L   K     
Sbjct: 179 FRCMHINGKMRTAQRSRLLIDFAEADKAILSNARCLTEGVDVPAVDMVAFLSPKK----- 233

Query: 667 SKTSLIQTIGRAARNVNSKVILY 689
           S   ++Q  GRA R    K I Y
Sbjct: 234 SVVDIVQATGRAMRKSEGKEIGY 256


>gi|170593727|ref|XP_001901615.1| Type III restriction enzyme, res subunit family protein [Brugia
           malayi]
 gi|158590559|gb|EDP29174.1| Type III restriction enzyme, res subunit family protein [Brugia
           malayi]
          Length = 904

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 32/151 (21%)

Query: 584 RILLTVLTKRMAEDLTEYL-----YERNIR-VRYMHSEVK--------TLERIEIIRDLR 629
           R ++ V T+++A+ L+ +L      +R  R V ++ S  +        T E+  +I +  
Sbjct: 554 RTIIFVTTRKLAQYLSHHLNAVKIVDRTSRAVGFITSSNRSSALNGQTTEEQRTVIENFN 613

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  ++  EGLDI  C L  I+  +  G   S+ SLIQ  GR AR  +SK IL 
Sbjct: 614 QGTLKVLVATSVAEEGLDISACNL--IIKYNNTG---SERSLIQRRGR-ARAKHSKSIL- 666

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
                    LA+D +    EK+LE+ +K ++
Sbjct: 667 ---------LALDGSI--EEKELENIQKEHL 686


>gi|156044376|ref|XP_001588744.1| hypothetical protein SS1G_10291 [Sclerotinia sclerotiorum 1980]
 gi|160380622|sp|A7EY76|DBP5_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp5
 gi|154694680|gb|EDN94418.1| hypothetical protein SS1G_10291 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 470

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A  + E L     +V  +H   +  ER  ++ D R GK  VL+  N+L  G+D+    +V
Sbjct: 321 ASHIAERLTAEGHKVAAIHGAFEGAERDTVLEDFRQGKAKVLITTNVLARGIDVQSVSMV 380

Query: 655 AILDADKEG---FLRSKTSLIQTIGRAAR 680
              D   +G   F     + +  IGR  R
Sbjct: 381 INYDIPMKGRSDFEPDPETYLHRIGRTGR 409


>gi|194466507|ref|ZP_03072494.1| primosomal protein N' [Lactobacillus reuteri 100-23]
 gi|194453543|gb|EDX42440.1| primosomal protein N' [Lactobacillus reuteri 100-23]
          Length = 809

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 12/105 (11%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLER----IEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           E + + L++   + R +  +V T  R     +++R     + D+L+G  ++ +GLD P  
Sbjct: 571 EKVEQELHQLLPQARIIRMDVDTTRRKGMHAKLLRQFGQHQADILLGTQMIAKGLDFPNV 630

Query: 652 GLVAILDADKEGFL-------RSKTSLIQTIGRAAR-NVNSKVIL 688
            LV +L+AD    L       R+   L Q  GRA R N   KVI+
Sbjct: 631 TLVGVLNADTGLGLPDFRASERTFDLLSQVSGRAGRANKQGKVII 675


>gi|118352576|ref|XP_001009559.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89291326|gb|EAR89314.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 630

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 26/172 (15%)

Query: 570 DVYDEINLAA-QQGLRILLTVLT-------------KRMAEDLTEYLYERNIRVRYMHSE 615
           DV  E N++  +Q + IL +VL              K   E++   L  +N  V ++H +
Sbjct: 321 DVKQEGNVSVTKQKINILTSVLKQIKFNQAIIFYNDKIKGENIFSELKAQNYSVIFIHGD 380

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
               +RI+++  +R  K  +++  +LL  G+DI    LV   D        S  +    I
Sbjct: 381 QTQADRIKVMNQIRRNKTQIIISTDLLSRGIDITTIDLVINYDIP-----SSVETYYHRI 435

Query: 676 GRAARNVNSKVILYAD-TITKSIQLAIDETTRRREKQLEHNKKHNI--NPQS 724
           GR  R +  K+   AD     +++ + +++  ++EK L  N+K N+  NPQ+
Sbjct: 436 GRTGR-LEQKL---ADLNQGNNLKQSENQSLEKQEKSLSSNQKKNLKNNPQN 483


>gi|125973793|ref|YP_001037703.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum ATCC
           27405]
 gi|281417950|ref|ZP_06248970.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum JW20]
 gi|125714018|gb|ABN52510.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum ATCC
           27405]
 gi|281409352|gb|EFB39610.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum JW20]
 gi|316940014|gb|ADU74048.1| ATP-dependent DNA helicase RecG [Clostridium thermocellum DSM 1313]
          Length = 694

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           ++ RV  +H ++   E+ E+++    G+ D+LV   ++  G+++P   L+ + +A++ G 
Sbjct: 510 KDFRVGLLHGKMPAGEKEEVMQKFLKGEIDILVSTTVVEVGVNVPNATLMVVENAERFGL 569

Query: 665 LRSKTSLIQTIGRAARNVN-SKVILYADT---ITKSIQLAIDETT 705
                 L Q  GR  R  + S  ILY ++   I K     + ETT
Sbjct: 570 ----AQLHQLRGRVGRGPHQSYCILYNESKSQIAKERMKVMQETT 610


>gi|23015924|ref|ZP_00055688.1| COG1061: DNA or RNA helicases of superfamily II [Magnetospirillum
           magnetotacticum MS-1]
          Length = 559

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T   A  +T       IR   +  E+   ER   + D   GK  V++ + +L EG D P 
Sbjct: 245 TVEHARGVTAAFESAGIRTIMVTGEMPDGERKAALADYADGKAQVVINVAVLTEGWDHPP 304

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
              V +L          K+++IQ +GR  R VN
Sbjct: 305 TSCVVLLRPSS-----YKSTMIQMVGRGLRTVN 332


>gi|312134884|ref|YP_004002222.1| primosomal protein n' [Caldicellulosiruptor owensensis OL]
 gi|311774935|gb|ADQ04422.1| primosomal protein N' [Caldicellulosiruptor owensensis OL]
          Length = 724

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 17/110 (15%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI--EIIRDLRLGKFDVLVGINLLREGLDI 648
           T+++ E++  Y   ++ RV  M S+  + +    +I++  R  + D+L+G  ++ +GL  
Sbjct: 488 TQKIEEEIKAYF--KDARVLRMDSDTTSKKDATEQIVKKFREKEADILIGTQMIAKGLHF 545

Query: 649 PECGLVAILDAD----------KEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           P+  LV ++DAD          +E   R+   L Q  GR+ R    +VI+
Sbjct: 546 PDLTLVGVIDADILLNMPDFRSRE---RTFQLLTQVAGRSGREKPGRVII 592


>gi|300721423|ref|YP_003710694.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus nematophila ATCC 19061]
 gi|297627911|emb|CBJ88457.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus nematophila ATCC 19061]
          Length = 427

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 18/122 (14%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   ED+  +L     RV  +  +V   +R+ I+ +  LG  D+LV  ++  
Sbjct: 258 RCIIFANTKHRCEDIWTHLAADGHRVGLLTGDVAQKKRLRILEEFSLGNLDILVATDVAA 317

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            GL IP    V   D   D E +       +  IGR  R         A     SI LA 
Sbjct: 318 RGLHIPSVTHVFNYDLPDDCEDY-------VHRIGRTGR---------AGESGHSISLAC 361

Query: 702 DE 703
           +E
Sbjct: 362 EE 363


>gi|312194633|ref|YP_004014694.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
 gi|311225969|gb|ADP78824.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
          Length = 543

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V T+R A+ + E L  R      +H ++   +R + +R  R GK DVLV  ++   G+D+
Sbjct: 240 VRTRRTADKVAEDLARRGFAAAPVHGDLGQGQREQALRAFRAGKVDVLVATDVAARGIDV 299


>gi|239610526|gb|EEQ87513.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis ER-3]
          Length = 658

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLVA 655
           LTE      I  RY+ S+     R   +   R  ++ VLV   L  EG DIP  +C L+A
Sbjct: 315 LTERFRRFGIDARYITSQTPKDLRTNELEAFRNQEYPVLVNCGLFTEGTDIPNIDCVLLA 374

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR 680
                     RSK  LIQ IGR  R
Sbjct: 375 RP-------TRSKNLLIQMIGRGLR 392


>gi|311740664|ref|ZP_07714491.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304184|gb|EFQ80260.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 619

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 9/151 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++   TK   E++ E L +R      ++ ++   +R   +  L+ G+ D+LV  ++   
Sbjct: 297 IIVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAAR 356

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  + + IL+     + +  +I+
Sbjct: 357 GLDVERITHVVNFDIPNDTESYVHR----IGRTGRAGR--SGEAILFVTPRERRMLRSIE 410

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
             T  R ++++      +N +  KEK  + I
Sbjct: 411 RVTNARLEEMDLPSVDEVN-EKRKEKFAQSI 440


>gi|193606177|ref|XP_001946302.1| PREDICTED: ATP-dependent RNA helicase DDX19A-like [Acyrthosiphon
           pisum]
          Length = 464

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA  L   + E+   V  +  E+   +RI ++   R GK  VLV  N+L  G+DI +
Sbjct: 325 TKKMALWLVSQMVEQGHAVALLSGELTVQQRISVLDRFREGKEKVLVTTNVLSRGIDIEQ 384

Query: 651 CGLVAILD 658
             +V   D
Sbjct: 385 VTIVINFD 392


>gi|168182588|ref|ZP_02617252.1| primosomal protein N' [Clostridium botulinum Bf]
 gi|182674142|gb|EDT86103.1| primosomal protein N' [Clostridium botulinum Bf]
          Length = 735

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILA 206
           +GDQ  A+ ++L   +S  K+ L+ GVTGSGKT     +++ +    + +I++ P   L 
Sbjct: 202 NGDQSLALYRIL---NSNRKLSLIHGVTGSGKTEIYMHLVKKLIEKDKDSIILVPEISLT 258

Query: 207 AQLYSEFKNFF 217
            Q+   FK  F
Sbjct: 259 PQMVERFKGRF 269


>gi|166711384|ref|ZP_02242591.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 634

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  ++  IL+     K +  +I+
Sbjct: 311 GLDVERISHVLNYDIPYDTESYVHR----IGRTGRAGRTGDA--ILFVTPREKGMLRSIE 364

Query: 703 ETTRRREKQLEHNKKHNIN 721
             TR+  ++++      +N
Sbjct: 365 RATRQPIEEMQLPSVDAVN 383


>gi|147920338|ref|YP_685889.1| Hef nuclease [uncultured methanogenic archaeon RC-I]
 gi|110621285|emb|CAJ36563.1| putative type III restriction-modification system, restriction
           subunit [uncultured methanogenic archaeon RC-I]
          Length = 792

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++EI+   R G+++ L+  ++  EGLDIP   LV   +      + S+   IQ  GR  
Sbjct: 417 KQVEILDRFRAGEYNTLIATSVAEEGLDIPSTDLVLFYEP-----VPSEIRSIQRRGRTG 471

Query: 680 RNVNSKVIL 688
           RN   +V++
Sbjct: 472 RNTVGRVVV 480


>gi|78486490|ref|YP_392415.1| ATP-dependent DNA helicase RecG [Thiomicrospira crunogena XCL-2]
 gi|78364776|gb|ABB42741.1| ATP-dependent DNA helicase RecG [Thiomicrospira crunogena XCL-2]
          Length = 690

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++RV  +H  +K  E+ E +R  +  + D+LV   ++  G+++P   L+ I +A++ G  
Sbjct: 514 DLRVGLIHGRLKAEEKTERMRAFKNHELDLLVATTVIEVGVNVPNASLMIIENAERLGL- 572

Query: 666 RSKTSLIQTIGRAARNVNSK--VILY 689
                L Q  GR  R       V+LY
Sbjct: 573 ---AQLHQLRGRVGRGSKKSHCVLLY 595


>gi|20091234|ref|NP_617309.1| DNA repair protein [Methanosarcina acetivorans C2A]
 gi|19916351|gb|AAM05789.1| DNA repair protein [Methanosarcina acetivorans C2A]
          Length = 481

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  I+   R G +  +V   +L EG+D+PE  +  I+         SK + +Q +GR  
Sbjct: 367 ERNSILEKFRTGSYRAVVTSKVLDEGIDVPEANIGIIVSGTG-----SKRAYVQRLGRIL 421

Query: 680 RNVNSK-VILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           R    K  +LY     ++ +     T RRR++ L   K+
Sbjct: 422 RKKEGKEAVLYEIIAGETTETG---TARRRKEALSSGKR 457


>gi|148544397|ref|YP_001271767.1| replication restart DNA helicase PriA [Lactobacillus reuteri DSM
           20016]
 gi|184153761|ref|YP_001842102.1| primosomal protein N' [Lactobacillus reuteri JCM 1112]
 gi|227363178|ref|ZP_03847312.1| primosomal replication protein n [Lactobacillus reuteri MM2-3]
 gi|325682717|ref|ZP_08162233.1| primosome assembly protein PriA [Lactobacillus reuteri MM4-1A]
 gi|148531431|gb|ABQ83430.1| replication restart DNA helicase PriA [Lactobacillus reuteri DSM
           20016]
 gi|183225105|dbj|BAG25622.1| primosomal protein N' [Lactobacillus reuteri JCM 1112]
 gi|227071784|gb|EEI10073.1| primosomal replication protein n [Lactobacillus reuteri MM2-3]
 gi|324977067|gb|EGC14018.1| primosome assembly protein PriA [Lactobacillus reuteri MM4-1A]
          Length = 809

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 12/105 (11%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLER----IEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           E + + L++   + R +  +V T  R     +++R     + D+L+G  ++ +GLD P  
Sbjct: 571 EKVEQELHQLLPQARIIRMDVDTTRRKGMHAKLLRQFGQHQADILLGTQMIAKGLDFPNV 630

Query: 652 GLVAILDADKEGFL-------RSKTSLIQTIGRAAR-NVNSKVIL 688
            LV +L+AD    L       R+   L Q  GRA R N   KVI+
Sbjct: 631 TLVGVLNADTGLGLPDFRASERTFDLLSQVSGRAGRANKQGKVII 675


>gi|56807937|ref|ZP_00365757.1| COG1198: Primosomal protein N' (replication factor Y) - superfamily
           II helicase [Streptococcus pyogenes M49 591]
          Length = 733

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQL 209
           Q +A+ ++++ I    K  L+ G+TGSGKT     +IEA+    + AIV+ P   L  Q+
Sbjct: 201 QASAVTEIVEQIGKPSKPFLIEGITGSGKTEVYLHIIEAVLKQDKTAIVLVPEISLTPQM 260

Query: 210 YSEFKNFF 217
            S F + F
Sbjct: 261 TSRFISRF 268


>gi|300214854|gb|ADJ79270.1| ComF operon protein 1 [Lactobacillus salivarius CECT 5713]
          Length = 445

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 15/101 (14%)

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIE ++ +R  ++  L+   +L  G+  PE  L+ +L AD   F  S ++L+Q  GR  R
Sbjct: 347 RIEKVQKMRNKEYTYLITTTILERGVTFPEIDLL-VLGADNSVF--STSALVQIAGRVGR 403

Query: 681 NV---NSKVILYADTITKSIQLAIDETTRRREKQLEH-NKK 717
           +V   +  VI   D  T+ ++ A        +KQ+E  NKK
Sbjct: 404 SVSRPDGDVIFICDRYTRKVKDA--------QKQIEFLNKK 436


>gi|291543374|emb|CBL16483.1| ATP-dependent DNA helicase RecG [Ruminococcus sp. 18P13]
          Length = 680

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H ++K  E+ +++   + G+ D+LV   ++  G+D+P   ++ I ++++ G    
Sbjct: 500 RVGLLHGKMKPAEKEQVMASFKAGELDLLVCTTVVEVGVDVPNATVMLIENSERFGL--- 556

Query: 668 KTSLIQTIGRAARNV-NSKVILYADTITK 695
            + L Q  GR  R    S  IL  D+ ++
Sbjct: 557 -SQLHQLRGRVGRGSKQSHCILITDSTSE 584


>gi|240275905|gb|EER39418.1| DEAD/DEAH box helicase [Ajellomyces capsulatus H143]
          Length = 653

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLVA 655
           LTE      +  RY+ S+     R + +   R  ++ VLV   L  EG DIP  +C L+A
Sbjct: 310 LTEAFRRFGVDARYITSQTPKDIRTDELEAFRNQEYPVLVNCGLFTEGTDIPNIDCVLLA 369

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR 680
                     RSK  LIQ IGR  R
Sbjct: 370 RP-------TRSKNLLIQMIGRGLR 387


>gi|227937255|gb|ACP43273.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Gorilla gorilla]
          Length = 660

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +LV   +   G
Sbjct: 443 LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 502

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           LDI     V   D  +D E ++    +T  +  +G A    N K +     ITK +
Sbjct: 503 LDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNM----NITKDL 554


>gi|224060117|ref|XP_002300045.1| predicted protein [Populus trichocarpa]
 gi|222847303|gb|EEE84850.1| predicted protein [Populus trichocarpa]
          Length = 791

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I  + + G +I++   TK+M + L+  L  R      +H +    ER  ++   R G+
Sbjct: 401 EQILRSQESGSKIIIFCSTKKMCDQLSRNL-TRQFGAAAIHGDKSQSERDYVLSQFRTGR 459

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +LV  ++   GLDI +  +V   D     F       +  IGR  R
Sbjct: 460 SPILVATDVAARGLDIKDIRVVINYD-----FPTGVEDYVHRIGRTGR 502


>gi|254827173|ref|ZP_05231860.1| recS [Listeria monocytogenes FSL N3-165]
 gi|258599556|gb|EEW12881.1| recS [Listeria monocytogenes FSL N3-165]
          Length = 467

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 12/106 (11%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           +K++AE     L E   +RV Y H ++ T +RI I +    G+ DV+   +    G+D  
Sbjct: 236 SKKLAESTAHELSEIAELRVAYYHGDMDTEDRIIIQQQFVYGQLDVICATSAFGMGIDKA 295

Query: 650 ECGLVA--ILDADKEGFLRSKTSLIQTIGRAARNVNSKV--ILYAD 691
           +   V    + AD E +L       Q IGRA R+    V  +LYA+
Sbjct: 296 DIRYVIHYHMPADLEAYL-------QEIGRAGRDGEDSVAILLYAN 334


>gi|156937960|ref|YP_001435756.1| ATP-dependent helicase [Ignicoccus hospitalis KIN4/I]
 gi|156566944|gb|ABU82349.1| DEAD/H associated domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 882

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 591 TKRMAEDLTEYLYERNI--RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           T+++A  L +YL +  +  +V   HS +    R+E+   L+ G+  V+V    L  G+DI
Sbjct: 288 TEKVAFKLKQYLEKEGLADKVAAHHSSLSREVRLEVEEKLKKGELKVVVTSTSLEMGIDI 347

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
               LV +L + K     S + L+Q +GRA   +++
Sbjct: 348 GHVDLVILLSSPK-----SVSRLLQRVGRAGHRIDA 378


>gi|156087226|ref|XP_001611020.1| eukaryotic initiation factor 4A-3 (eIF4A-3)  [Babesia bovis T2Bo]
 gi|154798273|gb|EDO07452.1| eukaryotic initiation factor 4A-3 (eIF4A-3) , putative [Babesia
           bovis]
          Length = 395

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+   + L + + + N  V  MH E+   ER +I++  R G+  VL+  ++   GLD+ +
Sbjct: 270 TREKVDWLAKRMQDSNFTVCKMHGEMSQKERNDIMQRFRRGESRVLISTDIWGRGLDVQQ 329

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D        S+ + I  IGR+ R
Sbjct: 330 VSLVVNYD-----LPNSRENYIHRIGRSGR 354


>gi|145501031|ref|XP_001436498.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124403638|emb|CAK69101.1| unnamed protein product [Paramecium tetraurelia]
          Length = 553

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            +D+ EYL  + + V  +H   +  +R + ++    G+ DVLV  ++  +GLD P+   V
Sbjct: 372 VDDINEYLLIKGVEVVGLHGGKQQEDRTKALKQFLNGQKDVLVATDVAAKGLDFPDIKHV 431

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR 680
              D  K+       S I  IGR  R
Sbjct: 432 INYDMPKD-----IESYIHRIGRTGR 452


>gi|91763276|ref|ZP_01265240.1| ATP-dependent DNA helicase recG [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717689|gb|EAS84340.1| ATP-dependent DNA helicase recG [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 683

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 6/80 (7%)

Query: 144 QTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKTF----TMAKVIEAMQRPAIV 198
           + ++  + DQ  ++  + K ++S+ K+ +LL G  GSGKT     +   VI +  + A+ 
Sbjct: 258 KLNFTLTNDQKISLGDINKDLNSKSKMFRLLQGDVGSGKTIVALISSLNVINSGFQVAL- 316

Query: 199 MAPNKILAAQLYSEFKNFFP 218
           MAP +ILA Q Y+  K  FP
Sbjct: 317 MAPTEILARQHYTLAKKLFP 336


>gi|34541397|ref|NP_905876.1| transcription-repair coupling factor [Porphyromonas gingivalis W83]
 gi|34397714|gb|AAQ66775.1| transcription-repair coupling factor [Porphyromonas gingivalis W83]
          Length = 1122

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 18/210 (8%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
            +  L+K +  REK   L G+ GS     + K++    RP + +A +   A  L+S+ + 
Sbjct: 19  GVQALMKAL-DREKCVALDGLCGSSAAL-IVKLLHESGRPVLCIASDMEEAGYLFSDLEQ 76

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
                +  +F S Y          R   Y   +++  +Q+  +R  A  +L     C +V
Sbjct: 77  LGGEGSALFFPSSY---------KRAIKYGHTDAA--QQV--LRAEALAALSMEGSCPLV 123

Query: 276 SSV--SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
            S   +    + + +   + +  ++ GD +++  L   L++  ++R D     G F V G
Sbjct: 124 VSYPEAVAERVVAGDILEKEMHSIRQGDRLDRDFLRDLLLEWGFERTDYVYEPGQFAVRG 183

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
             +++F S   ++  R+  F ++IE I  F
Sbjct: 184 SLLDVF-SFSRELPVRIDFFDDEIESIRLF 212



 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H  +   E   +I D    ++DVLV   ++  G+D+P    + I DA + G  
Sbjct: 790 DARVAVGHGRMSPTELERLILDFVHYEYDVLVATTIIENGIDVPNANTIIIDDAHRYGL- 848

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
              + L Q  GR  R+ N K   Y  +   S+   + + +RRR + +E+
Sbjct: 849 ---SELHQLRGRVGRS-NRKAFCYLLSPPLSV---LSDDSRRRLQAIEN 890


>gi|13470979|ref|NP_102548.1| transcription repair coupling factor [Mesorhizobium loti
           MAFF303099]
 gi|14021722|dbj|BAB48334.1| transcription repair coupling factor [Mesorhizobium loti
           MAFF303099]
          Length = 1165

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

Query: 597 DLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           ++ E+L E    ++V   H ++   E  +I+     G++DVL+   ++  GLDIP    +
Sbjct: 842 EIHEFLKESVPELKVAVAHGQMPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTL 901

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
            I  AD  G     + L Q  GR  R   SKV  YA   T      + +T  RR K L+
Sbjct: 902 IIHRADMFGL----SQLYQLRGRVGR---SKVRAYA-LFTLPANRKLTDTAERRLKVLQ 952


>gi|16758984|ref|NP_445977.1| probable ATP-dependent RNA helicase DDX52 [Rattus norvegicus]
 gi|34582286|sp|Q99PT0|DDX52_RAT RecName: Full=Probable ATP-dependent RNA helicase DDX52; AltName:
           Full=ATP-dependent RNA helicase ROK1-like; Short=rROK1L;
           AltName: Full=DEAD box protein 52
 gi|12862376|dbj|BAB32441.1| ROK1-like protein [Rattus norvegicus]
 gi|149053684|gb|EDM05501.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Rattus norvegicus]
          Length = 598

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R  E   E +YE  I V  +H+E    +R   +   R GK  VL+   LL  G+D    
Sbjct: 424 ERAKELFHELIYE-GINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGV 482

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            LV   D     F  S    I  IGR  R  N
Sbjct: 483 NLVINYD-----FPTSSVEYIHRIGRTGRAGN 509


>gi|254796593|ref|YP_003081429.1| primosomal protein N' [Neorickettsia risticii str. Illinois]
 gi|254589831|gb|ACT69193.1| primosomal protein N' [Neorickettsia risticii str. Illinois]
          Length = 709

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 12/97 (12%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            +++AE++ E    + + +  M S+ K  E I  I     G  D+++G  ++ +G D P 
Sbjct: 478 VEKIAEEIGEIFPSKKVVI--MSSDTKITENIGKIEK---GDVDIVIGTQIIAKGYDFPR 532

Query: 651 CGLVAILDAD---KEGFLRSKTS----LIQTIGRAAR 680
             L+AI+D+D     G LR+       L Q IGR  R
Sbjct: 533 LTLLAIIDSDVSMHAGDLRNSEKSFQILQQAIGRVGR 569


>gi|226289750|gb|EEH45234.1| ATP-dependent RNA helicase DBP2 [Paracoccidioides brasiliensis
           Pb18]
          Length = 482

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 37/65 (56%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  ++V  ++  
Sbjct: 378 KILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVAS 437

Query: 644 EGLDI 648
            G+D+
Sbjct: 438 RGIDV 442


>gi|217969253|ref|YP_002354487.1| ATP-dependent DNA helicase RecG [Thauera sp. MZ1T]
 gi|217506580|gb|ACK53591.1| ATP-dependent DNA helicase RecG [Thauera sp. MZ1T]
          Length = 684

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 8/101 (7%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L E L E  +RV  +H  ++  E+   +     G  D+LV   ++  G+D+P   L+ I 
Sbjct: 502 LVEALPE--LRVGLVHGRLRNEEKSATMAAFSAGALDLLVATTVIEVGVDVPNASLMVIE 559

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKV--ILYADTITKS 696
            A++ G       L Q  GR  R     V  ++YA  ++++
Sbjct: 560 HAERFGL----AQLHQLRGRVGRGTAESVCILIYAQPLSQT 596


>gi|167849824|ref|ZP_02475332.1| putative ATP-dependent helicase lhr [Burkholderia pseudomallei
           B7210]
          Length = 520

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSE 615
           P+E   A    E +YD I   A      L+ V T+RMAE    +L +R     +   H  
Sbjct: 259 PLEPVMANDVWERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAHHGS 318

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +Q +
Sbjct: 319 LAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFLQRV 373

Query: 676 GRAARNVNS 684
           GR+  ++  
Sbjct: 374 GRSGHHIGG 382


>gi|152991203|ref|YP_001356925.1| transcription-repair coupling factor [Nitratiruptor sp. SB155-2]
 gi|151423064|dbj|BAF70568.1| transcription-repair coupling factor [Nitratiruptor sp. SB155-2]
          Length = 976

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLL-GVTGSGKTFTMAKVIEAMQR- 194
           DIT FQ    +  + DQ  AI  +L+ + S + + +LL G  G GKT      I A+ + 
Sbjct: 453 DITLFQSHAGFEYTEDQKRAIDTILQRLSSGKVMDMLLSGDVGFGKTEVAMNAIYAIVKN 512

Query: 195 --PAIVMAPNKILAAQLY-SEFKNFFPHN 220
              A V+ P  +L+AQ Y S  K   P N
Sbjct: 513 GYQAAVVVPTTLLSAQHYESLVKRLEPFN 541


>gi|119351037|gb|ABL63414.1| ATP-dependent RNA helicase [Rattus norvegicus]
          Length = 598

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R  E   E +YE  I V  +H+E    +R   +   R GK  VL+   LL  G+D    
Sbjct: 424 ERAKELFHELIYE-GINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGV 482

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            LV   D     F  S    I  IGR  R  N
Sbjct: 483 NLVINYD-----FPTSSVEYIHRIGRTGRAGN 509


>gi|300857956|ref|YP_003782939.1| hypothetical protein cpfrc_00538 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685410|gb|ADK28332.1| hypothetical protein cpfrc_00538 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205685|gb|ADL10027.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330237|gb|ADL20431.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275920|gb|ADO25819.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis I19]
          Length = 441

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A ++G  I+ T  TKR A +L E L  R  RV  +H ++    R   +   R G+ D+LV
Sbjct: 251 AKERGKTIIFT-RTKRTAAELAEDLAGRGFRVAGVHGDLGQAARELSLGMFRNGRVDILV 309

Query: 638 GINLLREGLDIPEC 651
             ++   GLDI + 
Sbjct: 310 ATDVAARGLDIDDV 323


>gi|302839493|ref|XP_002951303.1| hypothetical protein VOLCADRAFT_120953 [Volvox carteri f.
           nagariensis]
 gi|300263278|gb|EFJ47479.1| hypothetical protein VOLCADRAFT_120953 [Volvox carteri f.
           nagariensis]
          Length = 414

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE + ER+  V   H +++   R  I+R+ R G   VL+  +LL  G+D+ +
Sbjct: 289 TRRKVDWLTEKMRERDHTVSATHGDMEQNARDVIMREFRSGSSRVLITTDLLARGIDVQQ 348

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D   +       + +  IGR+ R
Sbjct: 349 VSLVINYDLPTQ-----PENYLHRIGRSGR 373


>gi|290510825|ref|ZP_06550195.1| transcription-repair coupling factor [Klebsiella sp. 1_1_55]
 gi|289777541|gb|EFD85539.1| transcription-repair coupling factor [Klebsiella sp. 1_1_55]
          Length = 1148

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 58/300 (19%), Positives = 130/300 (43%), Gaps = 43/300 (14%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TG+     +A++ E  + P +++AP+   A +L  E + F   +++   ++ ++    +
Sbjct: 22  LTGAACATLVAEMAERHKGPVVLVAPDMQNALRLNDEIRQF--TDSMVMGLADWETLPYD 79

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           ++ P  D    + +++  Q+  M+         +L++R     V   S ++G   V    
Sbjct: 80  SFSPHQDIISSRLATLY-QLPTMQRGVLIVPVSTLMQR-----VCPHSFLHGHALV---- 129

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
                +K G S+ +  L   L    Y+  D  +  G +   G  +++FP    D  +R+ 
Sbjct: 130 -----MKKGQSLSRDALRDQLEGAGYRHVDQVMEHGEYATRGALLDLFPMG-SDQPYRLD 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            F ++I+ +  F   + + +  V  I +     +    PT  TA++  + + + R  E++
Sbjct: 184 FFDDEIDSLRLFDVDSQRTLEEVAAINLLPAHEF----PTDQTAIELFRSQWRDRF-EVK 238

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
           +     +A+ + Q++        + G+  +   Y + L      EP P LF Y P  +L+
Sbjct: 239 R-----DAEHIYQQV--------SKGTLPAGIEYWQPLFF---SEPLPPLFSYFPASTLI 282


>gi|290477139|ref|YP_003470054.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus bovienii SS-2004]
 gi|289176487|emb|CBJ83296.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus bovienii SS-2004]
          Length = 427

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 33/66 (50%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   ED+  +L     RV  +  +V   +R+ I+ +  LG  D+LV  ++  
Sbjct: 258 RCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEEFSLGNLDILVATDVAA 317

Query: 644 EGLDIP 649
            GL IP
Sbjct: 318 RGLHIP 323


>gi|283457475|ref|YP_003362053.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133468|dbj|BAI64233.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 732

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 11/155 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TK+  E++ + L  R      ++ ++    R   +  LR G+ D+LV  ++   
Sbjct: 309 IIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDVAAR 368

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+    LV   D   D E ++      I   GRA R      IL+     K +   I+
Sbjct: 369 GLDVERISLVVNYDIPHDTESYVHR----IGRTGRAGR--EGAAILFVTPREKYMLRQIE 422

Query: 703 ETTRRREKQLEHNKKHNIN---PQSVKEKIMEVID 734
           + TR++ + +       +N    Q   ++I E I+
Sbjct: 423 KATRQKVEPMHMPTAEAVNETRKQRFAQQITETIE 457


>gi|257876171|ref|ZP_05655824.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC20]
 gi|257810337|gb|EEV39157.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC20]
          Length = 676

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 103/234 (44%), Gaps = 39/234 (16%)

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC--MDNRPLRFEEWNCLRPTTIVVSA 530
           VD +H+ +      +R   +++  L E G+ LP    M   P+         P T+ ++A
Sbjct: 369 VDFAHLGLVITDEQHRFGVNQRKVLREKGY-LPDVLFMTATPI---------PRTLAITA 418

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYDEINLAAQQGLRILLT- 588
             G  ++      +++++  P G +  PVE R  R  Q E + +       QG ++ +  
Sbjct: 419 Y-GEMDVS-----VIDEM--PAGRI--PVETRWVRPPQFESILEWAQKELAQGHQMYVIC 468

Query: 589 -------VLTKRMAEDLTEYL---YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                  +L  + A ++ E L   +    +V  +H ++K  E+  I+   +  +  +LV 
Sbjct: 469 PLIEESEMLDVKNATEIYEQLQSYFSPTYQVGMLHGKMKNQEKDSIMEAFKENQLQILVS 528

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYAD 691
             ++  G+++P   ++ I+DAD+ G       L Q  GR  R  + S  IL A+
Sbjct: 529 TTVIEVGVNVPNATVMLIIDADRFGL----AQLHQLRGRVGRGADASYCILIAN 578


>gi|257866567|ref|ZP_05646220.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC30]
 gi|257872917|ref|ZP_05652570.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC10]
 gi|257800525|gb|EEV29553.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC30]
 gi|257807081|gb|EEV35903.1| ATP-dependent DNA helicase RecG [Enterococcus casseliflavus EC10]
          Length = 676

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 103/234 (44%), Gaps = 39/234 (16%)

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC--MDNRPLRFEEWNCLRPTTIVVSA 530
           VD +H+ +      +R   +++  L E G+ LP    M   P+         P T+ ++A
Sbjct: 369 VDFAHLGLVITDEQHRFGVNQRKVLREKGY-LPDVLFMTATPI---------PRTLAITA 418

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYDEINLAAQQGLRILLT- 588
             G  ++      +++++  P G +  PVE R  R  Q E + +       QG ++ +  
Sbjct: 419 Y-GEMDVS-----VIDEM--PAGRI--PVETRWVRPPQFESILEWAQKELAQGHQMYVIC 468

Query: 589 -------VLTKRMAEDLTEYL---YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                  +L  + A ++ E L   +    +V  +H ++K  E+  I+   +  +  +LV 
Sbjct: 469 PLIEESEMLDVKNATEIYEQLQSYFSPTYQVGMLHGKMKNQEKDSIMEAFKENQLQILVS 528

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYAD 691
             ++  G+++P   ++ I+DAD+ G       L Q  GR  R  + S  IL A+
Sbjct: 529 TTVIEVGVNVPNATVMLIIDADRFGL----AQLHQLRGRVGRGADPSYCILIAN 578


>gi|288942236|ref|YP_003444476.1| ATP-dependent DNA helicase RecG [Allochromatium vinosum DSM 180]
 gi|288897608|gb|ADC63444.1| ATP-dependent DNA helicase RecG [Allochromatium vinosum DSM 180]
          Length = 717

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 589 VLTKRMAEDLTEYLYE--RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           VL  + AED    L      +RV  +H  +K+ ER  ++     G  D+LV   ++  G+
Sbjct: 522 VLECQAAEDTARQLSACLEGLRVGLVHGRLKSQERDAVMAAFASGALDLLVATTVIEVGV 581

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVIL 688
           D+P   L+ I + ++ G       L Q  GR  R  V S  +L
Sbjct: 582 DVPNASLMIIENPERLGL----AQLHQLRGRVGRGSVESHCLL 620


>gi|261195416|ref|XP_002624112.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis SLH14081]
 gi|239587984|gb|EEQ70627.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis SLH14081]
          Length = 658

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--ECGLVA 655
           LTE      I  RY+ S+     R   +   R  ++ VLV   L  EG DIP  +C L+A
Sbjct: 315 LTERFRRFGIDARYITSQTPKDLRTNELEAFRNQEYPVLVNCGLFTEGTDIPNIDCVLLA 374

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR 680
                     RSK  LIQ IGR  R
Sbjct: 375 RP-------TRSKNLLIQMIGRGLR 392


>gi|238918068|ref|YP_002931582.1| ATP-dependent RNA helicase RhlB [Edwardsiella ictaluri 93-146]
 gi|238867636|gb|ACR67347.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 424

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 2/101 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   ED+  +L     RV  +  +V   +R+ I+ D   G  D+LV  ++  
Sbjct: 253 RCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVPQKKRLRILEDFTKGHIDILVATDVAA 312

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GL IP   +  + + D           I   GRA  + NS
Sbjct: 313 RGLHIP--AVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNS 351


>gi|189218310|ref|YP_001938952.1| transcription-repair coupling factor mfd (superfamily II helicase)
           [Methylacidiphilum infernorum V4]
 gi|189185168|gb|ACD82353.1| Transcription-repair coupling factor mfd (superfamily II helicase)
           [Methylacidiphilum infernorum V4]
          Length = 1060

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +I++   H  +K  E  E++     GK DVL+  +++  GLDIP    + I  AD  G  
Sbjct: 766 SIKIDIGHGRMKKHELEEVMERFVEGKIDVLLATSIIENGLDIPNANTIIIDRADLFGL- 824

Query: 666 RSKTSLIQTIGRAARNVNSKVILY 689
                L Q  GR  R+ N K   Y
Sbjct: 825 ---ADLYQLRGRVGRS-NQKAYAY 844



 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 95/243 (39%), Gaps = 43/243 (17%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTG---SGKTFTMAKVIEA 191
           SK++TF      Y    D P     LLK +H R   Q    +     SG++F +A  +  
Sbjct: 25  SKEMTF-----SYEKWLDHP-----LLKNLHHRIIEQRNCAIDSLPLSGQSFFLASFLRV 74

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            + P +V+A N                    E  +    +  P   +P  +  +  ES  
Sbjct: 75  YRGPLLVIAENI---------------KKTNEIALGLECWGSPYLILPEVEP-VPAESLP 118

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +      R S   SLL+    I++++   +   + S E   +  + L + +S ++K ++ 
Sbjct: 119 DPTFLAERLSTAYSLLDFPSGIIITTEQAMEEALPSPELLKEKRLPLAVENSFDRKAVIE 178

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW------RVSMFGNDIEEISEFY 364
            LV   Y+R D    RG F V G  I+ F        W      R+   GN +  + +F 
Sbjct: 179 KLVTAGYERVDSVDCRGQFAVRGAIIDTF-------CWDSCYPLRMEWEGNRLISLRQFD 231

Query: 365 PLT 367
           P+T
Sbjct: 232 PIT 234


>gi|189201972|ref|XP_001937322.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187984421|gb|EDU49909.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 611

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 3/98 (3%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+   +K   + + ++LY + + V  +HS+    ER + +R  R  +  +LV   +  
Sbjct: 386 RTLVFTNSKAKCDMVDDFLYNKGLPVTSIHSDRTQREREDALRSFRTARCPILVATGVTA 445

Query: 644 EGLDIPECGLVAILDADKEGFLRSK-TSLIQTIGRAAR 680
            GLD+    +  +++ D    +    T  I  IGR AR
Sbjct: 446 RGLDV--ANIKHVINYDLPSTMHEGITEYIHRIGRTAR 481


>gi|168182572|ref|ZP_02617236.1| ATP-dependent DNA helicase RecG [Clostridium botulinum Bf]
 gi|237795934|ref|YP_002863486.1| ATP-dependent DNA helicase RecG [Clostridium botulinum Ba4 str.
           657]
 gi|182674174|gb|EDT86135.1| ATP-dependent DNA helicase RecG [Clostridium botulinum Bf]
 gi|229262431|gb|ACQ53464.1| ATP-dependent DNA helicase RecG [Clostridium botulinum Ba4 str.
           657]
          Length = 679

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            +++  DL E  Y + + +  +H ++K  E+  I++D + GK   L+   ++  G+++P 
Sbjct: 486 VEKLYNDLKEE-YFKEVEIAILHGKMKGKEKDTIMKDFKEGKIKALISTTVIEVGVNVPN 544

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             L+ I +A++ G       L Q  GR  R
Sbjct: 545 ATLMVIENAERFGL----AQLHQLRGRVGR 570


>gi|119351039|gb|ABL63415.1| ATP-dependent RNA helicase [Rattus norvegicus]
          Length = 598

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R  E   E +YE  I V  +H+E    +R   +   R GK  VL+   LL  G+D    
Sbjct: 424 ERAKELFHELIYE-GINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGV 482

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            LV   D     F  S    I  IGR  R  N
Sbjct: 483 NLVINYD-----FPTSSVEYIHRIGRTGRAGN 509


>gi|86606417|ref|YP_475180.1| transcription-repair coupling factor [Synechococcus sp. JA-3-3Ab]
 gi|86554959|gb|ABC99917.1| transcription-repair coupling factor [Synechococcus sp. JA-3-3Ab]
          Length = 1156

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           E +    ++L+ G  +  ++L   L +  Y+R  +    G +   GD +++FP   E   
Sbjct: 134 EVFRAFCLKLEPGLEMSPQQLGQQLARLGYRRVSLVESEGEWSQRGDILDVFPVACE--- 190

Query: 348 W--RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           W  R+  FGN++E + EF P++ +    +  + +    +     P L      + + L+ 
Sbjct: 191 WPVRLEWFGNELERLREFDPVSQRSQDGIPYVWLTPTGYGPILWPALQEKADQLSQGLRQ 250

Query: 406 RL 407
           +L
Sbjct: 251 QL 252


>gi|58177858|gb|AAH89107.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Rattus norvegicus]
          Length = 598

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R  E   E +YE  I V  +H+E    +R   +   R GK  VL+   LL  G+D    
Sbjct: 424 ERAKELFHELIYE-GINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGV 482

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            LV   D     F  S    I  IGR  R  N
Sbjct: 483 NLVINYD-----FPTSSVEYIHRIGRTGRAGN 509


>gi|15230945|ref|NP_188610.1| eukaryotic translation initiation factor 4A, putative / eIF-4A,
           putative / DEAD box RNA helicase, putative [Arabidopsis
           thaliana]
 gi|109893655|sp|Q94A52|RH2_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 2
 gi|332642762|gb|AEE76283.1| DEAD-box ATP-dependent RNA helicase 2 [Arabidopsis thaliana]
          Length = 408

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + L+E +   N  V  MH ++   ER  I+ + R
Sbjct: 267 DLYDTLTIT-----QAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFR 321

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 322 SGDSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 367


>gi|34558252|ref|NP_908067.1| primosome assembly protein PriA [Wolinella succinogenes DSM 1740]
 gi|34483971|emb|CAE10967.1| PRIMOSOMAL PROTEIN N'-SUPEFAMILY II HELICASE-REPLICATION FACTOR Y
           [Wolinella succinogenes]
          Length = 614

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 9/106 (8%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGLDIP 649
           T ++AE+L+    E NI  R+    + T  R++  +     GK D+LVG  +L +G D  
Sbjct: 392 TAQIAEELSLLFPEANIE-RFDRDLITTQSRLKKTLERFNQGKIDLLVGTQMLSKGHDYH 450

Query: 650 ECGLVAILDA-------DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              L AIL         D     R+ ++L+Q  GR+ R  +  V++
Sbjct: 451 NVELAAILGIDYLLKSDDYRAHERAISTLLQLCGRSGRKESGGVLI 496


>gi|58261824|ref|XP_568322.1| hypothetical protein CNM01670 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134118443|ref|XP_772108.1| hypothetical protein CNBM1540 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254715|gb|EAL17461.1| hypothetical protein CNBM1540 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57230495|gb|AAW46805.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1528

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ + I + + G F++LV  ++  EGLDI E   V + D       R    L+Q IGR  
Sbjct: 715 EQKKTINEFKAGTFNILVSTSIGEEGLDIGEVDFVVLYD-----MPRQSIKLLQRIGRTG 769

Query: 680 R 680
           R
Sbjct: 770 R 770


>gi|315646187|ref|ZP_07899307.1| ATP-dependent DNA helicase RecG [Paenibacillus vortex V453]
 gi|315278386|gb|EFU41702.1| ATP-dependent DNA helicase RecG [Paenibacillus vortex V453]
          Length = 683

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H  +   E+ E++R     +  +L+   ++  G+D+P   L+ I+DAD+ G     
Sbjct: 505 VGLLHGRMTPAEKDEVMRQFYSNEVQLLISTTVVEVGVDVPNATLMIIMDADRFGL---- 560

Query: 669 TSLIQTIGRAARNVN-SKVILYAD 691
           + L Q  GR  R  + S  +L AD
Sbjct: 561 SQLHQLRGRVGRGQHASYCVLVAD 584


>gi|313675016|ref|YP_004053012.1| primosomal protein n' [Marivirga tractuosa DSM 4126]
 gi|312941714|gb|ADR20904.1| primosomal protein N' [Marivirga tractuosa DSM 4126]
          Length = 840

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 11/100 (11%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEV--KTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           T+++ +DL   L+  +++++ M  +   K     +II     G+  +L+G  ++ +GLD 
Sbjct: 601 TEKIEDDLK--LHFPDVKIQRMDRDTTRKKYSYQQIIESFESGETQILIGTQMVTKGLDF 658

Query: 649 PECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
               LV I+DAD+  +        R+   ++Q  GRA R+
Sbjct: 659 ENVSLVGIVDADRMMYYPDFRAHERAFQMMLQVSGRAGRS 698


>gi|301169122|emb|CBW28719.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810]
          Length = 439

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++  
Sbjct: 250 RGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D        S  + +  IGR AR
Sbjct: 310 RGIDIDDVSHVMNFD-----LPYSADTYLHRIGRTAR 341


>gi|296271676|ref|YP_003654307.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296095851|gb|ADG91801.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 488

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  + L+ YL  +    + +H +++  +R E+IR  + G  DVL+  ++   GLD+ +
Sbjct: 245 TKKEVDRLSTYLVSQGHMAKGLHGDMEQRQREEVIRSFKKGALDVLIATDVAARGLDVND 304

Query: 651 CGLVAI--LDADKEGFLRSKTSLIQTIGRAAR 680
              V    L  D E       S +  IGR  R
Sbjct: 305 VSHVFNYHLPFDSE-------SYVHRIGRTGR 329


>gi|284802387|ref|YP_003414252.1| hypothetical protein LM5578_2143 [Listeria monocytogenes 08-5578]
 gi|284995529|ref|YP_003417297.1| hypothetical protein LM5923_2094 [Listeria monocytogenes 08-5923]
 gi|284057949|gb|ADB68890.1| hypothetical protein LM5578_2143 [Listeria monocytogenes 08-5578]
 gi|284060996|gb|ADB71935.1| hypothetical protein LM5923_2094 [Listeria monocytogenes 08-5923]
          Length = 467

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 12/106 (11%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           +K++AE     L E   +RV Y H ++ T +RI I +    G+ DV+   +    G+D  
Sbjct: 236 SKKLAESTAHELSEIAELRVAYYHGDMDTEDRIIIQQQFVYGQLDVICATSAFGMGIDKA 295

Query: 650 ECGLVA--ILDADKEGFLRSKTSLIQTIGRAARNVNSKV--ILYAD 691
           +   V    + AD E +L       Q IGRA R+    V  +LYA+
Sbjct: 296 DIRYVIHYHMPADLEAYL-------QEIGRAGRDGEDSVAILLYAN 334


>gi|283138935|gb|ADB12538.1| transcription-repair coupling factor [uncultured bacterium 9F08]
          Length = 1155

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++++ DL E L E +I V +     + LER+  + D    +F++LV   ++  G+DIP  
Sbjct: 833 EKISRDLEELLPEASIGVAHGQMPERELERV--MSDFYHQRFNLLVCTTIIETGIDIPSA 890

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD+ G       L Q  GR  R+
Sbjct: 891 NTIIINRADRLGL----AQLYQLRGRVGRS 916


>gi|294659122|ref|XP_461462.2| DEHA2F25828p [Debaryomyces hansenii CBS767]
 gi|202953634|emb|CAG89881.2| DEHA2F25828p [Debaryomyces hansenii]
          Length = 704

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           I  +Y+  E    ER  II D + G  +VL  + +  EG DIP    + +    K     
Sbjct: 308 INAQYVTGETAKHERQAIIEDFKKGIIEVLCNVQVFTEGTDIPNIDSLFLARPTK----- 362

Query: 667 SKTSLIQTIGRAARNVNSK 685
           S+  L+Q IGR  R   SK
Sbjct: 363 SRPLLVQMIGRGLRLHKSK 381


>gi|164429479|ref|XP_955826.2| hypothetical protein NCU04354 [Neurospora crassa OR74A]
 gi|157073493|gb|EAA26590.2| hypothetical protein NCU04354 [Neurospora crassa OR74A]
          Length = 642

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           D+T          R++ S+    ER +I+   +  +F VLV   +  EG DIP    + +
Sbjct: 275 DMTATFRRYGYDARFVTSDTPAKERADILDAFKRFEFPVLVNCGVFTEGTDIPNIDCILM 334

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR 680
               K     S+  LIQ IGR  R
Sbjct: 335 ARPTK-----SRNLLIQMIGRGMR 353


>gi|154417727|ref|XP_001581883.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121916114|gb|EAY20897.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 441

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 38/66 (57%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TK  A+ +T  L   + +   MHS+++  ER++ + + R G+  +LV  ++  
Sbjct: 270 QVIVFASTKEAAQTITLILRNFSYKTAVMHSDMQESERLKELEEFRAGRQRILVATDVAA 329

Query: 644 EGLDIP 649
            GLDIP
Sbjct: 330 RGLDIP 335


>gi|220929887|ref|YP_002506796.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
 gi|220000215|gb|ACL76816.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
           H10]
          Length = 565

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++LT  L  R      +H +++   R +++   R G FD+L+  ++   G+D+ +
Sbjct: 252 TKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMNLFRKGNFDILIATDVAARGIDVDD 311

Query: 651 CGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              V   D   D E ++      I   GRA R   +   +Y 
Sbjct: 312 VEAVFNYDLPNDDEYYVHR----IGRTGRAGRTGKAFTFIYG 349


>gi|80979133|gb|ABB54769.1| Dicer-2 [Drosophila teissieri]
          Length = 1719

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 12/150 (8%)

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           +++  RN   +   S ++   +   I+  R G  ++++  ++L EG+D+  C  V ILD 
Sbjct: 418 QFMVGRNTISQDFESVIERKHQKSAIQQFRDGNANLMICSSVLEEGIDVQACNYVLILDP 477

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK---SIQLAIDETTRRR-EKQLEHN 715
                L++    +QT GRA  N N+  +L++  + +   S Q+A   T      + L+  
Sbjct: 478 -----LKTFNMYVQTKGRARSN-NASFVLFSSELDRGKISQQIAQYRTAHAEIAEYLKLR 531

Query: 716 KKHNINPQ--SVKEKIMEVIDPILLEDAAT 743
                 P+   VK+   +VI P + E  A 
Sbjct: 532 VLERTEPEMYEVKQHFQDVIQPFINEHGAV 561


>gi|50557160|ref|XP_505988.1| YALI0F28391p [Yarrowia lipolytica]
 gi|74659615|sp|Q6C024|PRP28_YARLI RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|49651858|emb|CAG78800.1| YALI0F28391p [Yarrowia lipolytica]
          Length = 575

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           KR  E +++ L     R   +H   +  +R + ++ L+ G  DVLV  ++   GLDIP  
Sbjct: 441 KRDCEAVSDALVAAGWRTAIIHGGKQQEQREQAVQHLKRGAVDVLVATDVAGRGLDIPNV 500

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            LV  ++      + S T  I   GRA +
Sbjct: 501 SLV--VNFQMANNIESYTHRIGRTGRAGK 527


>gi|327443709|gb|EGE90363.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
          Length = 560

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 64/126 (50%), Gaps = 8/126 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G+  +LV  ++  
Sbjct: 301 KVIIFCRTKRACQRLSDDLDDRGFKPRAIHGDLTQVAREKALKKFRHGEATILVATDVAA 360

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSKVILYADT-----ITKSI 697
            G+D+   G+  +++ +     ++    I   GRA A+ +   ++ +AD      I K++
Sbjct: 361 RGIDV--TGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADVTRWKLINKAL 418

Query: 698 QLAIDE 703
            L + E
Sbjct: 419 NLELSE 424


>gi|319940673|ref|ZP_08015015.1| primosomal protein N [Sutterella wadsworthensis 3_1_45B]
 gi|319805824|gb|EFW02591.1| primosomal protein N [Sutterella wadsworthensis 3_1_45B]
          Length = 677

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 7/85 (8%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM-----QRPAIVMAPNKI 204
           + +Q AA++ +L    S  +  LL GVTGSGKT     +I+++     +   +++ P   
Sbjct: 144 NAEQRAAVSAVLS--MSGFQAWLLFGVTGSGKTEVYLHLIKSILERDPESQVLLLVPEIN 201

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYY 229
           L  QL    K  FPH AV    S Y
Sbjct: 202 LTPQLVGRVKRRFPHEAVAALNSEY 226


>gi|316971006|gb|EFV54849.1| eukaryotic initiation factor 4A [Trichinella spiralis]
          Length = 465

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 7/113 (6%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y  ++++     + ++   +++  E L   L +R   V  MH ++   +R  I++  R
Sbjct: 317 DIYTTLSIS-----KAVIFCNSRQKVEKLARELTDRKFTVTCMHGDMTQQDRDVIMQQFR 371

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  +LL  G+DI +  +V   D   ++E ++         IGR+ R
Sbjct: 372 TGSSRVLISTDLLARGIDIQQVSIVINYDIPHNRENYIHRYEQPAVFIGRSGR 424


>gi|294790717|ref|ZP_06755875.1| transcription-repair coupling factor [Scardovia inopinata F0304]
 gi|294458614|gb|EFG26967.1| transcription-repair coupling factor [Scardovia inopinata F0304]
          Length = 1227

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 74/177 (41%), Gaps = 16/177 (9%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF-VSYYDYYQPEAYVPRTDTYIEKESSIN 252
           RP +++ P+   A    +  ++++  N  +   ++ ++    E   PR DT   + S   
Sbjct: 83  RPVVLVVPSSRDAEDAVASIRSWYRGNPSDIDELAAWETLPHERLSPRADTIARRMSVFR 142

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSV-----SCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
               R+ H    S L     I+V  V       + GI  V+      +    G  ++ + 
Sbjct: 143 ----RLAHPVAGSRLFSVLKILVVPVRSLIQPVVRGIQDVQP-----LVFASGGQMDLEW 193

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
               L++  Y R D+ + RG F V G  ++IFP        R+  FG++I+ I  F+
Sbjct: 194 AEKRLIENAYVRSDLVMDRGEFAVRGGILDIFPPTAAHPV-RIDFFGDEIDSIKAFH 249


>gi|289342912|ref|NP_001166066.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Bos taurus]
 gi|284794217|gb|ADB93367.1| DEAD box polypeptide 3 Y-linked short isoform [Bos taurus]
 gi|296470425|gb|DAA12540.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Bos taurus]
          Length = 660

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N      L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 433 DLLNATGTDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVI 687
             +LV   +   GLDI     V   D   D E ++    +T  +  +G A    N + I
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLGLATSFFNERNI 550


>gi|284794215|gb|ADB93366.1| DEAD box polypeptide 3 Y-linked long isoform [Bos taurus]
          Length = 661

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N      L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 433 DLLNATGTDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 491

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVI 687
             +LV   +   GLDI     V   D   D E ++    +T  +  +G A    N + I
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLGLATSFFNERNI 550


>gi|284046175|ref|YP_003396515.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283950396|gb|ADB53140.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 460

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 9/97 (9%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L + L  +N+    MH +    +R   +     G+ DVLV  ++   G
Sbjct: 244 LVFVRTKRGADRLVKRLRAQNVESVAMHGDKTQGQRERALSRFERGEVDVLVATDVAARG 303

Query: 646 LDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
           +D+     V   DA  D+EG+       +  IGR  R
Sbjct: 304 IDVNGVSHVINFDAPEDREGY-------VHRIGRTGR 333


>gi|295688387|ref|YP_003592080.1| excinuclease ABC, C subunit [Caulobacter segnis ATCC 21756]
 gi|295430290|gb|ADG09462.1| excinuclease ABC, C subunit [Caulobacter segnis ATCC 21756]
          Length = 634

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 29/45 (64%)

Query: 751 QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           Q  +  + K +A + S+ KQM  AA++L FE AAR+RD I+ L S
Sbjct: 207 QAEAFLRGKSRAVIASMAKQMEDAAEDLEFERAARLRDRIRALSS 251


>gi|240247227|emb|CAX68236.1| dicer-1 [Blattella germanica]
          Length = 2271

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 5/65 (7%)

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +E++  ++ E+++  R+ + ++LVG ++L EG+D+P+C LV   +  +        S +Q
Sbjct: 710 AEIEHRKQEEVLKRFRMRECNLLVGTSVLEEGIDVPKCNLVIHFNVPQ-----VYRSYVQ 764

Query: 674 TIGRA 678
           + GRA
Sbjct: 765 SKGRA 769


>gi|194290299|ref|YP_002006206.1| dead box ATP-dependent RNA helicase with p-loop hydrolase domain
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224134|emb|CAQ70143.1| DEAD box ATP-dependent RNA helicase with P-loop hydrolase domain
           [Cupriavidus taiwanensis LMG 19424]
          Length = 511

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 561 IRSARTQVEDVYDE---INLAAQ-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           +R A  QVED + +   ++L  Q     Q  + ++ V +K     L  +L    I    +
Sbjct: 251 VRQAVYQVEDGHKQAAVVHLLKQRAEQSQSRQCIVFVNSKIGCSRLARHLEREGINAAAI 310

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H +    ER++ +   + G  D LV  ++   GLDIP+   V   D        S    +
Sbjct: 311 HGDKTQTERMQTLDGFKSGTIDALVATDVAARGLDIPDMPCVINFD-----LPYSAEDYV 365

Query: 673 QTIGRAAR 680
             IGR  R
Sbjct: 366 HRIGRTGR 373


>gi|145496370|ref|XP_001434176.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401299|emb|CAK66779.1| unnamed protein product [Paramecium tetraurelia]
          Length = 472

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 6/150 (4%)

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           ++ Q ED   EI L +    +I++   TK   + L  YL +  +R + +H + +  ER  
Sbjct: 296 SKEQKEDKLKEI-LKSLGTRKIIIFCQTKIKCDQLQLYLIQDGLRCKSLHGDKRQSERDF 354

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++   + G   VLV  ++   GLDI +   V   D  K          +  IGR  R   
Sbjct: 355 VMNSFKKGDTTVLVATDVASRGLDIKDIEFVINFDMPK-----MIEDYVHRIGRTGRAGA 409

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLE 713
             V +      +  +LA D     RE Q E
Sbjct: 410 QGVSISLFDSYEDAKLAGDLVGVLRESQNE 439


>gi|13514809|ref|NP_004651.2| ATP-dependent RNA helicase DDX3Y [Homo sapiens]
 gi|169881239|ref|NP_001116137.1| ATP-dependent RNA helicase DDX3Y [Homo sapiens]
 gi|73620957|sp|O15523|DDX3Y_HUMAN RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|23273291|gb|AAH34942.1| DDX3Y protein [Homo sapiens]
 gi|119612016|gb|EAW91610.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Homo sapiens]
 gi|119612017|gb|EAW91611.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Homo sapiens]
          Length = 660

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +LV   +   G
Sbjct: 443 LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 502

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           LDI     V   D  +D E ++    +T  +  +G A    N K +     ITK +
Sbjct: 503 LDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNM----NITKDL 554


>gi|67639077|ref|ZP_00437990.1| putative ATP-dependent helicase lhr [Burkholderia mallei GB8 horse
           4]
 gi|238519629|gb|EEP83099.1| putative ATP-dependent helicase lhr [Burkholderia mallei GB8 horse
           4]
          Length = 620

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSE 615
           P+E   A    E +YD I   A      L+ V T+RMAE    +L +R     +   H  
Sbjct: 259 PLEPVMANDVWERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAHHGS 318

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +Q +
Sbjct: 319 LAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFLQRV 373

Query: 676 GRAARNVNS 684
           GR+  ++  
Sbjct: 374 GRSGHHIGG 382


>gi|309972421|gb|ADO95622.1| ATP-dependent RNA helicase [Haemophilus influenzae R2846]
          Length = 439

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++  
Sbjct: 250 RGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D        S  + +  IGR AR
Sbjct: 310 RGIDIDDVSHVMNFD-----LPYSADTYLHRIGRTAR 341


>gi|331657178|ref|ZP_08358140.1| transcription-repair-coupling factor (TRCF) (ATP-dependent helicase
           mfd) [Escherichia coli TA206]
 gi|331055426|gb|EGI27435.1| transcription-repair-coupling factor (TRCF) (ATP-dependent helicase
           mfd) [Escherichia coli TA206]
          Length = 391

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  ++         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTIQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I   +    + G+  +   Y + L      EP P LF
Sbjct: 231 WR----------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282


>gi|322516389|ref|ZP_08069314.1| primosome assembly protein PriA [Streptococcus vestibularis ATCC
           49124]
 gi|322125122|gb|EFX96515.1| primosome assembly protein PriA [Streptococcus vestibularis ATCC
           49124]
          Length = 798

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  + LTE L E  +    + +  K     +++     G+ D+L+G  ++ +GLD P 
Sbjct: 559 TQKAYDQLTELLPEARVIRMDVDTTRKKGAHEKLLETFGSGQADILLGTQMIAKGLDFPN 618

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
             LV +L+AD    L       R+   L Q  GRA R
Sbjct: 619 VTLVGVLNADTSLNLPDFRSAERTFQLLTQVAGRAGR 655


>gi|301065942|ref|YP_003787965.1| superfamily II DNA/RNA helicase [Lactobacillus casei str. Zhang]
 gi|300438349|gb|ADK18115.1| Superfamily II DNA/RNA helicase required for DNA uptake
           [Lactobacillus casei str. Zhang]
          Length = 420

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 8/122 (6%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G   LL V     A  +   +    +RV  + S  +   R E I   R  +  VLV   +
Sbjct: 294 GRSCLLFVPKISWAPQIAALVQRNGLRVAGVASTDRL--RAEKITAFRQRQIQVLVTTTI 351

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK---VILYADTITKSIQ 698
           L  G+ +P+C +  +  AD+     + ++L+Q  GRA R  +S    V+ + D  T ++ 
Sbjct: 352 LERGVTVPKCAVGVVAAADRA---FTASALVQIAGRAGRAADSADDPVVFFTDRYTLALL 408

Query: 699 LA 700
            A
Sbjct: 409 AA 410


>gi|168335018|ref|ZP_02693133.1| RecG-like helicase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 677

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 5/91 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            + V Y+H ++K  ++ +I+     G+ D+LV   ++  G+++P   ++ I +A++ G  
Sbjct: 501 GLAVEYLHGKMKAKDKNKIMERFANGEIDILVSTTVVEVGVNVPNATIILIENAERFGL- 559

Query: 666 RSKTSLIQTIGRAAR-NVNSKVILYADTITK 695
              + L Q  GR  R +  S  IL +D+  K
Sbjct: 560 ---SQLHQLRGRVGRGSYESFCILVSDSYNK 587


>gi|145636310|ref|ZP_01791979.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
 gi|145270475|gb|EDK10409.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
          Length = 439

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++  
Sbjct: 250 RGIVFVRRREDARELSEILRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D        S  + +  IGR AR
Sbjct: 310 RGIDIDDVSHVMNFD-----LPYSADTYLHRIGRTAR 341


>gi|67970455|dbj|BAE01570.1| unnamed protein product [Macaca fascicularis]
          Length = 437

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 250 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 309

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 310 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 358

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    +  + P
Sbjct: 359 VLMDLKALLLEARQKVPP 376


>gi|116514351|ref|YP_813257.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093666|gb|ABJ58819.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325126050|gb|ADY85380.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 679

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 560 EIRSARTQVE--DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T V    +Y  +    Q  L +   +L  +    ++  L +  +RV  +    K
Sbjct: 285 DVGSGKTVVAVFAIYGAVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTK 344

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           T+ER EI ++L  G  +V++G + L++E +   + GLV I
Sbjct: 345 TMERREIYKELADGSINVVIGTHALIQEQVAFKKLGLVII 384



 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H ++   ++ +I+     G+ D+LV  +++  G+D+    L+ I DAD+ G     
Sbjct: 503 VVLLHGKMAAADKEQIMDRFAAGEVDILVTTSVIEVGVDVANANLMVIFDADRFGL---- 558

Query: 669 TSLIQTIGRAARN-VNSKVILYADTITKS 696
           + L Q  GR  R    S  +  AD  T++
Sbjct: 559 SQLHQLRGRIGRGQTQSYCVFLADPKTEA 587


>gi|145628788|ref|ZP_01784588.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|144979258|gb|EDJ88944.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|309750162|gb|ADO80146.1| ATP-dependent RNA helicase [Haemophilus influenzae R2866]
          Length = 439

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++  
Sbjct: 250 RGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D        S  + +  IGR AR
Sbjct: 310 RGIDIDDVSHVMNFD-----LPYSADTYLHRIGRTAR 341


>gi|325685873|gb|EGD27939.1| DNA helicase RecG [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 679

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 560 EIRSARTQVE--DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T V    +Y  +    Q  L +   +L  +    ++  L +  +RV  +    K
Sbjct: 285 DVGSGKTVVAVFAIYGAVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTK 344

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           T+ER EI ++L  G  +V++G + L++E +   + GLV I
Sbjct: 345 TMERREIYKELADGSINVVIGTHALIQEQVAFKKLGLVII 384



 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 19/189 (10%)

Query: 522 RPTTIVVSATPGSWELE-QCQGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLA 578
           RP  + ++ATP    L     G      IR  P G   P        +Q+++VY  +   
Sbjct: 404 RPDILAMTATPIPRSLALTVYGDTALSEIRHLPAGR-KPIKSYWKTSSQLDEVYSLMRQQ 462

Query: 579 AQQGLRI--LLTVLTKRMAEDL--TEYLYER------NIRVRYMHSEVKTLERIEIIRDL 628
             +G +I  +  ++++    DL   E L++R      +  V  +H ++   ++ +I+   
Sbjct: 463 LAEGFQIYAVTPLISESETIDLENAEALHDRLAGEFPDQEVVLLHGKMAAADKEQIMDRF 522

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVI 687
             G+ D+LV  +++  G+D+    L+ I DAD+ G     + L Q  GR  R    S  +
Sbjct: 523 AAGEVDILVTTSVIEVGVDVANANLMVIFDADRFGL----SQLHQLRGRIGRGQTQSYCV 578

Query: 688 LYADTITKS 696
             AD  T++
Sbjct: 579 FLADPKTEA 587


>gi|291453994|ref|ZP_06593384.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291356943|gb|EFE83845.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 469

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A D+ E L  R      +H ++    R + +R  R GK DVLV  ++   G+D+
Sbjct: 265 TKRTAADIAEQLQRRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDV 322


>gi|288904717|ref|YP_003429938.1| competence protein ComFA [Streptococcus gallolyticus UCN34]
 gi|288731442|emb|CBI12994.1| putative competence protein ComFA [Streptococcus gallolyticus
           UCN34]
          Length = 404

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT-- 674
           KT  R+EI+   R  +  +LV   +L  G+  P   +  +L   +   L +K++L+Q   
Sbjct: 307 KTENRLEIVEKFRKQELSILVTTTILERGVTFPCVDVFVVLANHR---LYTKSALVQISG 363

Query: 675 -IGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
            +GRAA     +++   D  TK ++ AI E     +K
Sbjct: 364 RVGRAAERPTGELLFLHDGSTKEMRKAIAEIKAMNKK 400


>gi|262172952|ref|ZP_06040629.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus MB-451]
 gi|261890310|gb|EEY36297.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus MB-451]
          Length = 464

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVYDE---------INLAAQQGLR-ILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y           + L  +   + +L+ + TK  A 
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQVLVFMRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L  YL E+ +    +H       R   + D + G+  +LV  ++   G+DIP+
Sbjct: 258 RLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQ 311


>gi|242033791|ref|XP_002464290.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor]
 gi|241918144|gb|EER91288.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor]
          Length = 1385

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 609 VRYMHSEVKTLE------RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           VRYM  +   L+       +EI+   R GK  +++   +L EGLD+P C L+   D
Sbjct: 418 VRYMAGKNFGLQYQSRNTHVEIVDSFRSGKVHLIIATQILEEGLDVPSCNLIIRFD 473


>gi|227891187|ref|ZP_04008992.1| ATP-dependent DNA helicase/translocase [Lactobacillus salivarius
           ATCC 11741]
 gi|227867061|gb|EEJ74482.1| ATP-dependent DNA helicase/translocase [Lactobacillus salivarius
           ATCC 11741]
          Length = 451

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 15/101 (14%)

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIE ++ +R  ++  L+   +L  G+  PE  L+ +L AD   F  S ++L+Q  GR  R
Sbjct: 353 RIEKVQKMRNKEYTYLITTTILERGVTFPEIDLL-VLGADNSVF--STSALVQIAGRVGR 409

Query: 681 NV---NSKVILYADTITKSIQLAIDETTRRREKQLEH-NKK 717
           +V   +  VI   D  T+ ++ A        +KQ+E  NKK
Sbjct: 410 SVSRPDGDVIFICDRYTRKVKDA--------QKQIEFLNKK 442


>gi|168015062|ref|XP_001760070.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688820|gb|EDQ75195.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 657

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 11/130 (8%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           S RTQ+  V D I      G RI++   TK  A +L   L  ++   R +H ++   +R 
Sbjct: 317 SMRTQL--VQDVIQCYGSGG-RIIVFTETKNDASELAGVL--KSGTARALHGDIPQNQRE 371

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             ++  R  KF VLV  ++   GLDI +  LV   +       R   + I   GR  R  
Sbjct: 372 VTLQGFRTSKFSVLVATDVAARGLDINDVQLVIQCEPP-----RDAETYIHRSGRTGRAG 426

Query: 683 NSKV-ILYAD 691
           N+ + +L+ D
Sbjct: 427 NTGISVLFYD 436


>gi|152980116|ref|YP_001352039.1| ATP-dependent DNA helicase RecG [Janthinobacterium sp. Marseille]
 gi|151280193|gb|ABR88603.1| RecG-like helicase [Janthinobacterium sp. Marseille]
          Length = 743

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 14/130 (10%)

Query: 569 EDVYDEINLAAQQGLRILLT--------VLTKRMAEDLTEYLYER--NIRVRYMHSEVKT 618
           ++V + ++ AA +G ++            L  + A D  + L E   +++V  +H  +K 
Sbjct: 520 DEVIERVHAAALEGRQVYWVCPLIEESEALQLQTATDTHQTLVEALPDLQVGLVHGRMKP 579

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            E+ +++     G+  VLV   ++  G+D+P   L+ I  A++ G     + L Q  GR 
Sbjct: 580 AEKQQVMDAFTRGEIHVLVATTVIEVGVDVPNASLMVIEHAERFGL----SQLHQLRGRV 635

Query: 679 ARNVNSKVIL 688
            R   + V L
Sbjct: 636 GRGSTASVCL 645


>gi|145634582|ref|ZP_01790291.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|229844418|ref|ZP_04464558.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 6P18H1]
 gi|145268127|gb|EDK08122.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|229812667|gb|EEP48356.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 6P18H1]
          Length = 439

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++  
Sbjct: 250 RGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D        S  + +  IGR AR
Sbjct: 310 RGIDIDDVSHVMNFD-----LPYSADTYLHRIGRTAR 341


>gi|145638668|ref|ZP_01794277.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
 gi|145272263|gb|EDK12171.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
          Length = 439

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++  
Sbjct: 250 RGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D        S  + +  IGR AR
Sbjct: 310 RGIDIDDVSHVMNFD-----LPYSADTYLHRIGRTAR 341


>gi|94990964|ref|YP_599064.1| primosome assembly protein PriA [Streptococcus pyogenes MGAS10270]
 gi|94544472|gb|ABF34520.1| Primosomal protein N' [Streptococcus pyogenes MGAS10270]
          Length = 803

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQL 209
           Q +A+ ++++ I    K  L+ G+TGSGKT     +IEA+    + AIV+ P   L  Q+
Sbjct: 271 QASAVTEIVEQIGKPSKPFLIEGITGSGKTEVYLHIIEAVLKQDKTAIVLVPEISLTPQM 330

Query: 210 YSEFKNFF 217
            S F + F
Sbjct: 331 TSRFISRF 338


>gi|256985213|ref|NP_084372.2| probable ATP-dependent RNA helicase DDX52 [Mus musculus]
 gi|56206921|emb|CAI25508.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Mus musculus]
 gi|74225794|dbj|BAE21716.1| unnamed protein product [Mus musculus]
 gi|148683781|gb|EDL15728.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Mus musculus]
          Length = 598

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +   A++L   L    I V  +H+E    +R   +   R GK  VL+   LL  
Sbjct: 416 VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLAR 475

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           G+D     LV   D     F  S    I  IGR  R  N
Sbjct: 476 GIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGN 509


>gi|50914731|ref|YP_060703.1| primosome assembly protein PriA [Streptococcus pyogenes MGAS10394]
 gi|50903805|gb|AAT87520.1| Primosomal protein N' [Streptococcus pyogenes MGAS10394]
          Length = 803

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQL 209
           Q +A+ ++++ I    K  L+ G+TGSGKT     +IEA+    + AIV+ P   L  Q+
Sbjct: 271 QASAVTEIVEQIGKPSKPFLIEGITGSGKTEVYLHIIEAVLKQDKTAIVLVPEISLTPQM 330

Query: 210 YSEFKNFF 217
            S F + F
Sbjct: 331 TSRFISRF 338


>gi|16272370|ref|NP_438583.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae Rd KW20]
 gi|260580515|ref|ZP_05848343.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae RdAW]
 gi|1174440|sp|P44701|SRMB_HAEIN RecName: Full=ATP-dependent RNA helicase srmB homolog
 gi|1573394|gb|AAC22078.1| ATP-dependent RNA helicase (srmB) [Haemophilus influenzae Rd KW20]
 gi|260092857|gb|EEW76792.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae RdAW]
          Length = 439

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++   G+DI +   V
Sbjct: 261 ARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAARGIDIDDVSHV 320

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR 680
              D        S  + +  IGR AR
Sbjct: 321 MNFD-----LPYSADTYLHRIGRTAR 341


>gi|325567339|ref|ZP_08144006.1| DNA helicase RecG [Enterococcus casseliflavus ATCC 12755]
 gi|325158772|gb|EGC70918.1| DNA helicase RecG [Enterococcus casseliflavus ATCC 12755]
          Length = 695

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 103/234 (44%), Gaps = 39/234 (16%)

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC--MDNRPLRFEEWNCLRPTTIVVSA 530
           VD +H+ +      +R   +++  L E G+ LP    M   P+         P T+ ++A
Sbjct: 388 VDFAHLGLVITDEQHRFGVNQRKVLREKGY-LPDVLFMTATPI---------PRTLAITA 437

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYDEINLAAQQGLRILLT- 588
             G  ++      +++++  P G +  PVE R  R  Q E + +       QG ++ +  
Sbjct: 438 Y-GEMDVS-----VIDEM--PAGRI--PVETRWVRPPQFESILEWAQKELAQGHQMYVIC 487

Query: 589 -------VLTKRMAEDLTEYL---YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                  +L  + A ++ E L   +    +V  +H ++K  E+  I+   +  +  +LV 
Sbjct: 488 PLIEESEMLDVKNATEIYEQLQSYFSPTYQVGMLHGKMKNQEKDTIMEAFKENQLQILVS 547

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYAD 691
             ++  G+++P   ++ I+DAD+ G       L Q  GR  R  + S  IL A+
Sbjct: 548 TTVIEVGVNVPNATVMLIIDADRFGL----AQLHQLRGRVGRGADASYCILIAN 597


>gi|303390992|ref|XP_003073726.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302874|gb|ADM12366.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 400

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 13/125 (10%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           ++ E+   +R E +R  +  KF VLV  ++   GLDI    LV   D  K G        
Sbjct: 269 LYGELSQEKREETMRMFKENKFSVLVCTDVGSRGLDISHVDLVINFDVPKSG-----KDY 323

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR---EKQLEHNKKHNINPQSVKEK 728
           +  +GR AR   +        IT   Q  +++  R     +K LE  K    N +S++EK
Sbjct: 324 VHRVGRTARAGRA-----GTAITLVTQYDVEQLQRVEFVLKKSLEEFKPVKKNFESIREK 378

Query: 729 IMEVI 733
           + E I
Sbjct: 379 VEETI 383


>gi|300214210|gb|ADJ78626.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 492

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++    R+ ++R  + G  D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 307 SGVTHVYNYD---IPQDPESYVHRIGRTGR 333


>gi|225352081|ref|ZP_03743104.1| hypothetical protein BIFPSEUDO_03691 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157328|gb|EEG70667.1| hypothetical protein BIFPSEUDO_03691 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 767

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 30/41 (73%)

Query: 755 LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           L+ + GK+++  L ++M  A+D L FE+AAR+RD+I+ L +
Sbjct: 246 LTGRIGKSYIAQLTREMKEASDELEFEKAARLRDQIQMLST 286


>gi|255560866|ref|XP_002521446.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223539345|gb|EEF40936.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 781

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 6/114 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I  + + G +I++   TK+M + L   L  R      +H +    ER  ++   R G+
Sbjct: 399 EQILRSQEPGSKIIIFCSTKKMCDQLARNL-TRTFGAAAIHGDKSQSERDHVLSQFRTGR 457

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             VLV  ++   GLDI +  +V   D     F       +  IGR  R   + V
Sbjct: 458 SPVLVATDVAARGLDIKDIRVVINYD-----FPTGVEDYVHRIGRTGRAGATGV 506


>gi|238606744|ref|XP_002396798.1| hypothetical protein MPER_02894 [Moniliophthora perniciosa FA553]
 gi|215470018|gb|EEB97728.1| hypothetical protein MPER_02894 [Moniliophthora perniciosa FA553]
          Length = 288

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 37/64 (57%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE ++ R   V  MH +++  +R  ++++ R G   VL+  +LL  G+D+ +
Sbjct: 181 TRRKVDWLTEKMHSREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLITTDLLARGIDVQQ 240

Query: 651 CGLV 654
             LV
Sbjct: 241 VSLV 244


>gi|242019547|ref|XP_002430222.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212515318|gb|EEB17484.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 763

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 586 LLTVLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           LL  +TK++ AE++   L  +   V  +H ++  +ER ++I   +  +  +LV  ++   
Sbjct: 517 LLIFVTKKVNAEEVANNLKLKEFDVLLLHGDMDQIERNKVITQFKKKEVSILVATDVAAR 576

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           GLDIP    V   D  ++  + + T  I   GRA 
Sbjct: 577 GLDIPHIKTVVNYDIARD--IDTHTHRIGRTGRAG 609


>gi|170701572|ref|ZP_02892520.1| DEAD/H associated domain protein [Burkholderia ambifaria IOP40-10]
 gi|170133511|gb|EDT01891.1| DEAD/H associated domain protein [Burkholderia ambifaria IOP40-10]
          Length = 1508

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 8/122 (6%)

Query: 566 TQVED-VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSEVKTLERI 622
           T V D VYD I   A      L+ V T+R AE +  +L ER  +  +   H  +    R 
Sbjct: 265 TDVWDQVYDRIAALAAAHRTTLVFVNTRRTAERMARHLAERLGKDAIAAHHGSLAKEHRF 324

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +  + L+ G+  +LV    L  G+DI +  LV  +     G  R     +Q +GR+  +V
Sbjct: 325 DAEQRLKRGELKLLVATASLELGIDIGDVDLVCQI-----GSPRGIAPFLQRVGRSGHHV 379

Query: 683 NS 684
             
Sbjct: 380 GG 381


>gi|167742811|ref|ZP_02415585.1| ATP-dependent DNA helicase [Burkholderia pseudomallei 14]
          Length = 594

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612
           PPV +    A    E +YD I   A      L+ V T+RMAE    +L +R     +   
Sbjct: 256 PPVPLGPVMANDVWERLYDRIAKLAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAH 315

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +
Sbjct: 316 HGSLAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFL 370

Query: 673 QTIGRAARNVNS 684
           Q +GR+  ++  
Sbjct: 371 QRVGRSGHHIGG 382


>gi|254226977|ref|ZP_04920540.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51]
 gi|125620490|gb|EAZ48861.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51]
          Length = 576

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 10/136 (7%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 269 IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 328

Query: 646 LDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
           LD+P    V   D   D E ++      I   GRA R    K IL   T    +   I+ 
Sbjct: 329 LDVPRITHVYNYDIPFDVESYIHR----IGRTGRAGR--KGKAILLVRTNQIRMLRTIER 382

Query: 704 TTRR--REKQLEHNKK 717
            TR    E QL H  K
Sbjct: 383 VTRSSMEEIQLPHRDK 398


>gi|2580554|gb|AAC51831.1| dead box, Y isoform [Homo sapiens]
 gi|2580556|gb|AAC51832.1| dead box, Y isoform [Homo sapiens]
          Length = 660

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +LV   +   G
Sbjct: 443 LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 502

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           LDI     V   D  +D E ++    +T  +  +G A    N K +     ITK +
Sbjct: 503 LDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNM----NITKDL 554


>gi|66522071|ref|XP_624210.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Apis mellifera]
          Length = 772

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 586 LLTVLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           LL  +TK++ AE+L   L  +   V  +H ++  +ER ++I   +  +   LV  ++   
Sbjct: 504 LLIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKEVSTLVATDVAAR 563

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           GLDIP   +  +L+ D    + + T  I   GRA 
Sbjct: 564 GLDIPH--IRTVLNYDVARDIDTHTHRIGRTGRAG 596


>gi|15801231|ref|NP_287248.1| transcription-repair coupling factor [Escherichia coli O157:H7
           EDL933]
 gi|12514664|gb|AAG55860.1|AE005321_3 transcription-repair coupling factor; mutation frequency decline
           [Escherichia coli O157:H7 str. EDL933]
          Length = 1148

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 61/306 (19%), Positives = 127/306 (41%), Gaps = 44/306 (14%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F     +   ++ +
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMN--LADW 73

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIG 285
           +    +++ P  D    + S++  Q+  M+         +L++R     V   S ++G  
Sbjct: 74  ETLPXDSFSPHQDIISSRLSTLY-QLPTMQRGVLIVPVNTLMQR-----VCPHSFLHGHA 127

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            V         ++ G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 128 LV---------MEKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWR- 232

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I   +    + G+  +   Y + L      EP P LF Y 
Sbjct: 233 ---------DTFEVKRDPEHIYQQV----SKGTLPAGIEYWQPLFF---SEPLPPLFSYF 276

Query: 466 PEDSLL 471
           P ++LL
Sbjct: 277 PANTLL 282



 Score = 37.4 bits (85), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|37522077|ref|NP_925454.1| hypothetical protein gll2508 [Gloeobacter violaceus PCC 7421]
 gi|35213076|dbj|BAC90449.1| gll2508 [Gloeobacter violaceus PCC 7421]
          Length = 437

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           LAA+     L+   TK+ A++L E L +   R   +H ++    R  ++   R  + +V+
Sbjct: 236 LAAEDPASALIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVV 295

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  ++   GLDI +   V   D  ++G      S I  IGR  R   + V +
Sbjct: 296 VATDVAARGLDIADLSHVINYDMPQDG-----ESYIHRIGRTGRAGRTGVAI 342


>gi|116181632|ref|XP_001220665.1| hypothetical protein CHGG_01444 [Chaetomium globosum CBS 148.51]
 gi|118597484|sp|Q2HEB0|PRP28_CHAGB RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|88185741|gb|EAQ93209.1| hypothetical protein CHGG_01444 [Chaetomium globosum CBS 148.51]
          Length = 705

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 32/189 (16%)

Query: 43  ADAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPS 102
           A+A+RR   E G+ R     R L+ Q E      E ++      SEK+  ++ E+     
Sbjct: 197 AEAIRRGDPETGEERA----RKLLEQHERVKQAAERKNFGK-HWSEKKLEDMKERDW--- 248

Query: 103 VQALARLIQSDNPLL-KNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLL 161
                R+ + +  +  K G I  P RSW+ +N  + +        Y    D+P  I +  
Sbjct: 249 -----RIFKENFGIATKGGAIPNPMRSWAESNLPRRLLEIVENVGY----DEPTPIQRAA 299

Query: 162 KGIHSREKVQLLLGVTGSGKT--FTMAKVIEAMQRP------------AIVMAPNKILAA 207
             I  + +  + + VTGSGKT  F +  ++   + P            A+++AP + L  
Sbjct: 300 IPIAQQARDLIGVAVTGSGKTAAFLLPLLVYISELPPLTEFNKNDGPYALILAPTRELVQ 359

Query: 208 QLYSEFKNF 216
           Q+ +E + F
Sbjct: 360 QIETEARKF 368


>gi|332258725|ref|XP_003278445.1| PREDICTED: probable ATP-dependent RNA helicase DDX52 [Nomascus
           leucogenys]
          Length = 598

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  E   E +YE  I V  +H+E    +R   +   R GK  VL+   LL  G+D     
Sbjct: 423 RAKELFHELIYE-GINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVN 481

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           LV   D     F  S    I  IGR  R  N
Sbjct: 482 LVINYD-----FPTSSVEYIHRIGRTGRAGN 507


>gi|326797755|ref|YP_004315574.1| primosomal protein N' [Sphingobacterium sp. 21]
 gi|326548519|gb|ADZ76904.1| primosomal protein N' [Sphingobacterium sp. 21]
          Length = 829

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           II D    +F+VLVG  ++ +GLD  +  ++ I++AD          F RS + L Q  G
Sbjct: 623 IITDFDEQQFNVLVGTQMVAKGLDFGKVTVIGIINADALINYPDFRAFERSFSLLSQVSG 682

Query: 677 RAAR 680
           RA R
Sbjct: 683 RAGR 686


>gi|310756762|gb|ADP20522.1| ATP-dependent RNA helicase DDX3X [Heterocephalus glaber]
          Length = 662

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 433 DLLNATGKDSL-TLVFVETKKGADSLEDFLYREGYACTSIHGDRSQRDREEALHQFRSGK 491

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N +
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDR 548


>gi|300811693|ref|ZP_07092168.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497320|gb|EFK32367.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 679

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 560 EIRSARTQVE--DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T V    +Y  +    Q  L +   +L  +    ++  L +  +RV  +    K
Sbjct: 285 DVGSGKTVVAVFAIYGAVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTK 344

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           T+ER EI ++L  G  +V++G + L++E +   + GLV I
Sbjct: 345 TMERREIYKELADGSINVVIGTHALIQEQVAFKKLGLVII 384



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 19/189 (10%)

Query: 522 RPTTIVVSATPGSWELE-QCQGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLA 578
           RP  + ++ATP    L     G      IR  P G   P        +Q+++VY  +   
Sbjct: 404 RPDILAMTATPIPRSLALTVYGDTALSEIRHLPAGR-KPIKSYWKTSSQLDEVYSLMRQQ 462

Query: 579 AQQGLRI--LLTVLTKRMAEDL--TEYLYER------NIRVRYMHSEVKTLERIEIIRDL 628
             +G +I  +  ++++    DL   E L++R      +  V  +H ++   ++ +I+   
Sbjct: 463 LAEGFQIYAVTPLISESETIDLENAEALHDRLAGEFPDQEVVLLHGKMAAADKEQIMDRF 522

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVI 687
             G+ D+LV  +++  G+D+    L+ I DAD+ G     + L Q  GR  R    S  +
Sbjct: 523 AAGEVDILVTTSVIEVGVDVANANLMVIFDADRFGL----SQLHQLRGRIGRGQTQSYCV 578

Query: 688 LYADTITKS 696
             AD  T++
Sbjct: 579 FLADPKTEA 587


>gi|296877016|ref|ZP_06901059.1| competence protein F [Streptococcus parasanguinis ATCC 15912]
 gi|296431982|gb|EFH17786.1| competence protein F [Streptococcus parasanguinis ATCC 15912]
          Length = 432

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 10/117 (8%)

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           L ++  E+L +Y  +    V ++ S+  T +R+ ++ + R     +LV   +L  G+  P
Sbjct: 313 LGQQFTENLKKYFPKDT--VGFVSSQ--TTDRLRMVEEFRNRALTILVSTTILERGVTFP 368

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNV---NSKVILYADTITKSIQLAIDE 703
              LV +   +    L +K++L+Q  GR  R+      K++  +D IT+ ++ AI E
Sbjct: 369 ---LVDVFVLESNHKLFTKSALVQISGRVGRSKERPTGKLLFLSDGITREMKKAIKE 422


>gi|209559769|ref|YP_002286241.1| primosome assembly protein PriA [Streptococcus pyogenes NZ131]
 gi|209540970|gb|ACI61546.1| Arrested fork binding [Streptococcus pyogenes NZ131]
          Length = 794

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQL 209
           Q +A+ ++++ I    K  L+ G+TGSGKT     +IEA+    + AIV+ P   L  Q+
Sbjct: 262 QASAVTEIVEQIGKPSKPFLIEGITGSGKTEVYLHIIEAVLKQDKTAIVLVPEISLTPQM 321

Query: 210 YSEFKNFF 217
            S F + F
Sbjct: 322 TSRFISRF 329


>gi|182678303|ref|YP_001832449.1| ATP-dependent DNA helicase RecG [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182634186|gb|ACB94960.1| ATP-dependent DNA helicase RecG [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 731

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 147 YHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTF----TMAKVIEAMQRPAIVMAP 201
           Y P+  Q  A+A++   + + R  ++LL G  GSGKT      MA ++EA  R A +MAP
Sbjct: 302 YRPTPCQEKALAEIKADLAAPRRMLRLLQGDVGSGKTLVALLAMAGMVEA-GRQAALMAP 360

Query: 202 NKILAAQLYSEF 213
            +ILA Q Y+  
Sbjct: 361 TEILARQHYANL 372


>gi|162446907|ref|YP_001620039.1| transcription-repair coupling factor [Acholeplasma laidlawii PG-8A]
 gi|161985014|gb|ABX80663.1| transcription-repair coupling factor (superfamily II helicase)
           [Acholeplasma laidlawii PG-8A]
          Length = 1143

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 9/103 (8%)

Query: 606 NIRVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           N R+ Y H ++ T  RIE  +      +FD+LV   ++  G+DIP    + I DAD  G 
Sbjct: 829 NARITYAHGKM-TKNRIEDTLSRFVEKEFDILVSTTIIETGVDIPNTNTLIIHDADHLGL 887

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
                 L Q  GR  R   S  I YA  +    +   DE  +R
Sbjct: 888 ----AQLYQLRGRVGR---SDRIAYAYLMFDGYKDVNDEAKKR 923


>gi|160914649|ref|ZP_02076863.1| hypothetical protein EUBDOL_00656 [Eubacterium dolichum DSM 3991]
 gi|158433189|gb|EDP11478.1| hypothetical protein EUBDOL_00656 [Eubacterium dolichum DSM 3991]
          Length = 472

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 19/130 (14%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           +L V T+   E++ + L   +IRV  +H  +   ER+  ++  R G+  +LV  ++   G
Sbjct: 243 ILFVRTQERVENIYQVLKAHHIRVTKLHGGLLQEERLANLKAFRSGEKRILVASDVAARG 302

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +DI +   V  +D     F   K + I  +GR AR          DT  K+I      T 
Sbjct: 303 IDIADISHVINVD-----FPDKKETYIHRLGRTARK---------DTSGKAISFV---TA 345

Query: 706 RRREK--QLE 713
           R +EK  QLE
Sbjct: 346 RDQEKLMQLE 355


>gi|146320180|ref|YP_001199891.1| RecG-like helicase [Streptococcus suis 98HAH33]
 gi|145690986|gb|ABP91491.1| RecG-like helicase [Streptococcus suis 98HAH33]
          Length = 635

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +  DL  +  E+ + V  +H ++K  E+  I++  +  K ++LV   ++  G+++P   +
Sbjct: 485 LQSDLQAHFGEQ-VTVDLLHGKMKNDEKDAIMQAFKERKTNILVSTTVIEVGVNVPNATV 543

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
           + I+DAD+ G     + L Q  GR  R +  S  +L A+  T+S
Sbjct: 544 MVIMDADRFGL----SQLHQLRGRVGRGHKQSYAVLVANPKTES 583


>gi|157168414|ref|YP_001456771.1| gp41, helicase [Corynebacterium phage BFK20]
 gi|74268846|emb|CAJ29724.1| gp41, helicase [Corynebacterium phage BFK20]
          Length = 537

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+        + L++ L    I    +     + ER E+  +   G+   LV + +L 
Sbjct: 239 RMLIFGAGVEHCQALSDTLSATGIHTALVVGSTSSEERTELFEEFTAGRVQALVTVQVLT 298

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           EG D+P C  V +         RS     Q +GRA R
Sbjct: 299 EGTDLPACDCVVLARP-----TRSAVLFTQMVGRALR 330


>gi|329119770|ref|ZP_08248447.1| excinuclease ABC subunit C [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464115|gb|EGF10423.1| excinuclease ABC subunit C [Neisseria bacilliformis ATCC BAA-1200]
          Length = 647

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 24/30 (80%)

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           ++ L+++M  AADNL FEEAAR RD+I+ L
Sbjct: 242 IQDLQRKMQQAADNLEFEEAARCRDQIQAL 271


>gi|317506800|ref|ZP_07964575.1| transcription-repair coupling factor [Segniliparus rugosus ATCC
           BAA-974]
 gi|316254911|gb|EFV14206.1| transcription-repair coupling factor [Segniliparus rugosus ATCC
           BAA-974]
          Length = 1155

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
           +L++GD  +   L   L    Y R D+   RG F V G  +++F S L+D   RV  +G+
Sbjct: 160 RLRVGDEQDLTLLAERLTALGYTRVDLVAERGDFAVRGGILDVF-SPLDDHPVRVQFWGD 218

Query: 356 DIEEISEF 363
           +I E+  F
Sbjct: 219 EITELRSF 226


>gi|254293940|ref|YP_003059963.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
 gi|254042471|gb|ACT59266.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
          Length = 687

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 15/152 (9%)

Query: 558 PVEIRSARTQ-VEDVYDEINLAAQQGLRILLT--VLTKRMAEDLT----EYLYERNIR-- 608
           P+  R A  + +EDV   +  AA +G R       +    AED +    + + ++ ++  
Sbjct: 449 PITTRVASEERIEDVMIAVAKAADRGERAFWVCPAIDSETAEDASVIARKEILQKYVKHP 508

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H ++   E+   +   R G+  VLV   ++  G+D+PE  ++ I  A  EGF    
Sbjct: 509 VALVHGKMAPAEKDAALDAFRTGEASVLVATTVVEVGIDVPEATIMVIEHA--EGF--GL 564

Query: 669 TSLIQTIGRAARN--VNSKVILYADTITKSIQ 698
             L Q  GR  R    +S ++LY   +++S Q
Sbjct: 565 AQLHQLRGRVGRGDKSSSCLLLYKPPLSESGQ 596


>gi|296813451|ref|XP_002847063.1| ATP-dependent RNA helicase DBP2 [Arthroderma otae CBS 113480]
 gi|238842319|gb|EEQ31981.1| ATP-dependent RNA helicase DBP2 [Arthroderma otae CBS 113480]
          Length = 417

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  ++V  ++  
Sbjct: 238 KVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQSERDWVLNEFKSGKSPIMVATDVAS 297

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+ +  +  +L+ D   +  +    +  IGR  R
Sbjct: 298 RGIDVRD--ITHVLNHD---YPNNSEDYVHRIGRTGR 329


>gi|223056258|gb|ACM80367.1| vasa [Eucidaris tribuloides]
          Length = 498

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 7/120 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TKR A+ L   L +       +H +    ER E +    +GK  +LV  ++  
Sbjct: 336 RTLVFVETKRNADFLASLLSQSGFPTTSIHGDRMQQEREEALHHFXIGKAPILVATSVAA 395

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSIQLAI 701
            GLDIP  G+  +++ D    +      +  IGR  R  N+      Y      SI  A+
Sbjct: 396 RGLDIP--GVKHVVNYDLPDVI---DEYVHRIGRTGRVGNLGRSTSFYDAGKDASIARAL 450


>gi|194383346|dbj|BAG64644.1| unnamed protein product [Homo sapiens]
          Length = 407

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +LV   +   G
Sbjct: 190 LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 249

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           LDI     V   D  +D E ++    +T  +  +G A    N K +     ITK +
Sbjct: 250 LDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNM----NITKDL 301


>gi|194868558|ref|XP_001972305.1| GG13958 [Drosophila erecta]
 gi|190654088|gb|EDV51331.1| GG13958 [Drosophila erecta]
          Length = 786

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 2/104 (1%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V  K  AE ++  L  +      +H ++   +R ++I   +  + D+LV  ++   
Sbjct: 515 VLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAAR 574

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GLDIP    V   D  ++  + + T  I   GRA    N+  ++
Sbjct: 575 GLDIPHIKNVVNYDTARD--IETHTHRIGRTGRAGEKGNAFTLV 616


>gi|168025828|ref|XP_001765435.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683285|gb|EDQ69696.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 535

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD-LRLGKFDVLVGINLLRE 644
           ++ V TK+ A+ L+  L +   RV  +H   KT E+ E+  D  R  +F+ LV  ++   
Sbjct: 381 IIFVNTKKSADTLSRQLDKNGYRVTTLHGG-KTQEQREVSLDGFRNKRFNCLVATDVAGR 439

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+DIP+  +  +++ D  G +   T  I   GRA +
Sbjct: 440 GIDIPD--VAHVINYDMPGNIEMYTHRIGRTGRAGK 473


>gi|104774262|ref|YP_619242.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423343|emb|CAI98190.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 679

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 560 EIRSARTQVE--DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T V    +Y  +    Q  L +   +L  +    ++  L +  +RV  +    K
Sbjct: 285 DVGSGKTVVAVFAIYGAVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTK 344

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           T+ER EI ++L  G  +V++G + L++E +   + GLV I
Sbjct: 345 TMERREIYKELADGSINVVIGTHALIQEQVAFKKLGLVII 384



 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H ++   ++ +I+     G+ D+LV  +++  G+D+    L+ I DAD+ G     
Sbjct: 503 VVLLHGKMAAADKEQIMDRFAAGEVDILVTTSVIEVGVDVANANLMVIFDADRFGL---- 558

Query: 669 TSLIQTIGRAARN-VNSKVILYADTITKS 696
           + L Q  GR  R    S  +  AD  T++
Sbjct: 559 SQLHQLRGRIGRGQTQSYCVFLADPKTEA 587


>gi|90409933|ref|ZP_01217950.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90329286|gb|EAS45543.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 462

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 34/172 (19%)

Query: 525 TIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAA 579
           T++ SAT P     EQ Q +  E       L++ PVEI+     A T V+ V+  +N   
Sbjct: 229 TLLFSATFP-----EQVQALTQE-------LLNDPVEIQLQSADASTLVQRVF-TVNKGE 275

Query: 580 QQGL-----------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +  L           + L+ V  K   E L + L +R I     H +     R  ++   
Sbjct: 276 KTALLAHLIKQHEWRQALIFVNAKNSCEHLADKLSKRGITAEVFHGDKGQGARTRVLEAF 335

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           + G+ +VL+  ++   GLDI +  +V   D       RS +  +  IGR+ R
Sbjct: 336 KSGEIEVLIATDIAARGLDIEKLPVVINFD-----LPRSPSDYMHRIGRSGR 382


>gi|84995332|ref|XP_952388.1| ATP-dependent RNA helicase [Theileria annulata strain Ankara]
 gi|65302549|emb|CAI74656.1| ATP-dependent RNA helicase, putative [Theileria annulata]
          Length = 477

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 40/73 (54%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   TK+  + ++  L + + +V  +HS +K  +R + +   R G  ++LV  +L+  G
Sbjct: 324 IIFTCTKKRCQLVSLTLDQLDFKVTCIHSLMKQSKRTDSLSKFRSGYSNLLVATDLVSRG 383

Query: 646 LDIPECGLVAILD 658
           +D+PE   V  LD
Sbjct: 384 IDVPEVAFVINLD 396


>gi|15675505|ref|NP_269679.1| primosome assembly protein PriA [Streptococcus pyogenes M1 GAS]
 gi|71911152|ref|YP_282702.1| primosome assembly protein PriA [Streptococcus pyogenes MGAS5005]
 gi|13622702|gb|AAK34400.1| putative primosomal replication factor Y [Streptococcus pyogenes M1
           GAS]
 gi|71853934|gb|AAZ51957.1| primosomal protein N' [Streptococcus pyogenes MGAS5005]
          Length = 794

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQL 209
           Q +A+ ++++ I    K  L+ G+TGSGKT     +IEA+    + AIV+ P   L  Q+
Sbjct: 262 QASAVTEIVEQIGKPSKPFLIEGITGSGKTEVYLHIIEAVLKQDKTAIVLVPEISLTPQM 321

Query: 210 YSEFKNFF 217
            S F + F
Sbjct: 322 TSRFISRF 329


>gi|76664712|emb|CAJ17795.1| superfamily II DNA and RNA helicase [Candidatus Phytoplasma solani]
          Length = 125

 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +++T YL ++      +H ++K  +R  ++ + R GK  +L+  ++   G+DI +
Sbjct: 24  TKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIQILIATDVAARGIDISD 83

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +V   D   E         +  IGR  R
Sbjct: 84  IKMVINYDLPHE-----DEVYVHRIGRTGR 108


>gi|52545677|emb|CAH10627.2| hypothetical protein [Homo sapiens]
          Length = 652

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 15/158 (9%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GL +    +  +++ D   +  S    +  IGR AR+ N K   Y      +
Sbjct: 394 IATDVASRGLGLDVEDVKFVINYD---YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 449

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 450 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 476


>gi|28895401|ref|NP_801751.1| primosome assembly protein PriA [Streptococcus pyogenes SSI-1]
 gi|28810647|dbj|BAC63584.1| putative primosomal replication factor Y [Streptococcus pyogenes
           SSI-1]
          Length = 803

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQL 209
           Q +A+ ++++ I    K  L+ G+TGSGKT     +IEA+    + AIV+ P   L  Q+
Sbjct: 271 QASAVTEIVEQIGKPSKPFLIEGITGSGKTEVYLHIIEAVLKQDKTAIVLVPEISLTPQM 330

Query: 210 YSEFKNFF 217
            S F + F
Sbjct: 331 TSRFISRF 338


>gi|305665487|ref|YP_003861774.1| transcription-repair coupling factor [Maribacter sp. HTCC2170]
 gi|88710243|gb|EAR02475.1| transcription-repair coupling factor [Maribacter sp. HTCC2170]
          Length = 1172

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 1/105 (0%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           +++K+ DS+    L   L + Q+KR D     G F V G  +++F S   D  +R+  FG
Sbjct: 193 LKIKVDDSLSLDFLNEVLFEYQFKRVDFVTEPGEFSVRGGIVDVF-SFSHDEPYRIEFFG 251

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           ++++ I  F   T      V  I I  N        T  + + YI
Sbjct: 252 DEVDSIRTFDVETQLSTEKVTRITIIPNVENKLLNETRESFLNYI 296


>gi|47567847|ref|ZP_00238555.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|47555524|gb|EAL13867.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
          Length = 436

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 66/125 (52%), Gaps = 9/125 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA+ + + L ER ++V  +H ++   +R ++++ +R  +F  +V  +L   G+DI  
Sbjct: 255 TKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI-TKSIQLAIDETTRRRE 709
            G+  +++ +    L      +  +GR AR  +S +   A TI   + + A+D   ++R 
Sbjct: 314 -GISHVINYELPSDL---DFFVHRVGRTARAGHSGI---AVTIYDPANEEALDSLEKQRN 366

Query: 710 KQLEH 714
            + +H
Sbjct: 367 IEFKH 371


>gi|47093371|ref|ZP_00231138.1| ATP-dependent DNA helicase RecQ, putative [Listeria monocytogenes
           str. 4b H7858]
 gi|47018242|gb|EAL09008.1| ATP-dependent DNA helicase RecQ, putative [Listeria monocytogenes
           str. 4b H7858]
          Length = 467

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 12/106 (11%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           +K++AE     L E  ++RV Y H ++ T +RI I +    G+ DV+   +    G+D  
Sbjct: 236 SKKLAESTALELSEIADLRVAYYHGDMDTEDRIIIQQQFVYGQLDVICATSAFGMGIDKA 295

Query: 650 ECGLVA--ILDADKEGFLRSKTSLIQTIGRAARNVNSKV--ILYAD 691
           +   V    + AD E +L       Q IGRA R+  + V  +LYA+
Sbjct: 296 DIRYVIHYHMPADLEAYL-------QEIGRAGRDGENSVAILLYAN 334


>gi|320533118|ref|ZP_08033850.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134690|gb|EFW26906.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 471

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 19/162 (11%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A+   R ++   TKR A  + + L  R      +H ++    R + +R  R  K DVL
Sbjct: 316 LQAEGRGRTIIFARTKRTAARVADDLRARGFATAALHGDLGQGAREQALRAFRNSKVDVL 375

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD---- 691
           V  ++   G+D+ +   V      ++     +   +  IGR  R  NS   + + D    
Sbjct: 376 VATDVAARGIDVDDVTHVINYQCPED-----EKIYVHRIGRTGRAGNSGTAVTFVDWDDV 430

Query: 692 ----TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
                I K++ L I+E       +  H  +H  +  S+ EK+
Sbjct: 431 PRWRIIAKALGLPIEEPV-----ETYHTSEHLFSDLSIPEKV 467


>gi|313124079|ref|YP_004034338.1| ATP-dependent DNA helicase recg [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280642|gb|ADQ61361.1| ATP-dependent DNA helicase RecG [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 679

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 560 EIRSARTQVE--DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           ++ S +T V    +Y  +    Q  L +   +L  +    ++  L +  +RV  +    K
Sbjct: 285 DVGSGKTVVAVFAIYGAVTAGYQAALMVPTEILANQHYHKISAMLEDFGVRVALLTGSTK 344

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAI 656
           T+ER EI ++L  G  +V++G + L++E +   + GLV I
Sbjct: 345 TMERREIYKELADGSINVVIGTHALIQEQVAFKKLGLVII 384



 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 19/189 (10%)

Query: 522 RPTTIVVSATPGSWELE-QCQGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLA 578
           RP  + ++ATP    L     G      IR  P G   P        +Q+++VY  +   
Sbjct: 404 RPDILAMTATPIPRSLALTVYGDTALSEIRHLPAGR-KPIKSYWKTSSQLDEVYSLMRQQ 462

Query: 579 AQQGLRI--LLTVLTKRMAEDL--TEYLYER------NIRVRYMHSEVKTLERIEIIRDL 628
             +G +I  +  ++++    DL   E L++R      +  V  +H ++   ++ +I+   
Sbjct: 463 LAEGFQIYAVTPLISESETIDLENAEALHDRLAGEFPDQEVVLLHGKMGAADKEQIMDRF 522

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVI 687
             G+ D+LV  +++  G+D+    L+ I DAD+ G     + L Q  GR  R    S  +
Sbjct: 523 AAGEVDILVTTSVIEVGVDVANANLMVIFDADRFGL----SQLHQLRGRIGRGQTQSYCV 578

Query: 688 LYADTITKS 696
             AD  T++
Sbjct: 579 FLADPKTEA 587


>gi|283768627|ref|ZP_06341539.1| transcription-repair coupling factor [Bulleidia extructa W1219]
 gi|283105019|gb|EFC06391.1| transcription-repair coupling factor [Bulleidia extructa W1219]
          Length = 1142

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 8/103 (7%)

Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKT-- 182
           H  ++ +  +++   F+    Y  + DQ  A+ ++ K + S + + +LL G  G GKT  
Sbjct: 572 HIGYAFSKDTEETKKFEDAFPYDLTEDQKKAMVEIKKDMESSKPMDRLLCGDVGFGKTEV 631

Query: 183 ---FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
               +   VI+  Q   +V+ P  ILA Q +S FKN +   AV
Sbjct: 632 SIRASFKAVIDHKQ--VVVLCPTTILAEQHFSTFKNRYKDFAV 672


>gi|227535604|ref|ZP_03965653.1| superfamily II DNA/RNA helicase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227186734|gb|EEI66801.1| superfamily II DNA/RNA helicase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 421

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E I   R  +  VLV   +L  G+ +P+C +  +  AD+     + ++L+Q  GRA R
Sbjct: 332 RAEKITAFRQRQIQVLVTTTILERGVTVPKCAVGVVAAADRA---FTASALVQIAGRAGR 388

Query: 681 NVNSK---VILYADTITKSIQLA 700
             +S    V+ + D  T ++  A
Sbjct: 389 AADSADDPVVFFTDRYTLALLAA 411


>gi|227542566|ref|ZP_03972615.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227181764|gb|EEI62736.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 718

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 9/151 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R    + ++ ++   +R   +  LR G+ D+LV  ++   
Sbjct: 352 MIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDILVATDVAAR 411

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R    + IL+     + +  +I+
Sbjct: 412 GLDVDRISHVLNYDIPHDTESYIHR----IGRTGRAGR--TGEAILFVTPRERRMLRSIE 465

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
             T    ++++      +N +S KEK  + I
Sbjct: 466 RVTNATLEEMQLPTVDEVN-ESRKEKFADSI 495


>gi|194378748|dbj|BAG63539.1| unnamed protein product [Homo sapiens]
          Length = 657

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +LV   +   G
Sbjct: 440 LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 499

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           LDI     V   D  +D E ++    +T  +  +G A    N K +     ITK +
Sbjct: 500 LDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNM----NITKDL 551


>gi|170017776|ref|YP_001728695.1| transcription-repair coupling factor [Leuconostoc citreum KM20]
 gi|169804633|gb|ACA83251.1| Transcription-repair coupling factor [Leuconostoc citreum KM20]
          Length = 1178

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H ++   +   ++ D   G +DVLV   ++  G+DIP    + + +AD  G    
Sbjct: 857 RVASIHGQMSETQLESVLYDFLNGNYDVLVTTTIIETGVDIPNANTLIVENADHMGL--- 913

Query: 668 KTSLIQTIGRAARN 681
            + L Q  GR  R+
Sbjct: 914 -SQLYQLRGRVGRS 926


>gi|156083731|ref|XP_001609349.1| DEAD/DEAH box helicase [Babesia bovis T2Bo]
 gi|154796600|gb|EDO05781.1| DEAD/DEAH box helicase [Babesia bovis]
          Length = 609

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 17/108 (15%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TKR A+ +  YL + N     +H +    +R E +R  + G+  +LV  ++   
Sbjct: 408 VLIFVETKRRADMIESYLLKENFMAVNIHGDRSQQDREEALRLFKTGERPILVATDVAAR 467

Query: 645 GLDIP------ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           GLDI        C L A +D             +  IGR  R  N  V
Sbjct: 468 GLDINNITHVINCDLPANID-----------DYVHRIGRTGRAGNVGV 504


>gi|114764341|ref|ZP_01443569.1| transcription-repair coupling factor [Pelagibaca bermudensis
           HTCC2601]
 gi|114543289|gb|EAU46306.1| transcription-repair coupling factor [Roseovarius sp. HTCC2601]
          Length = 1158

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 19/165 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAA-------QQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           PPV+  S RT V + +D + +         + G    +      +AE + E+L E+   V
Sbjct: 782 PPVDRLSIRTYVSE-FDAVTIREALLREHYRGGQSFYVVPRISDLAE-IEEFLREQVPEV 839

Query: 610 RYM--HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            Y+  H ++   E  E +     GKFDVL+   ++  GLDIP    + +  +D  G    
Sbjct: 840 SYVVAHGQMAAGELDERMNAFYDGKFDVLLATTIVESGLDIPTANTMVVHRSDMFGL--- 896

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
            + L Q  GR  R   SK   YA  +T   +  + +T ++R + L
Sbjct: 897 -SQLYQIRGRVGR---SKTRAYA-YLTTQPRAKLTDTAQKRLRVL 936


>gi|71904042|ref|YP_280845.1| primosome assembly protein PriA [Streptococcus pyogenes MGAS6180]
 gi|71803137|gb|AAX72490.1| primosomal protein N' [Streptococcus pyogenes MGAS6180]
          Length = 803

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQL 209
           Q +A+ ++++ I    K  L+ G+TGSGKT     +IEA+    + AIV+ P   L  Q+
Sbjct: 271 QASAVTEIVEQIGKPSKPFLIEGITGSGKTEVYLHIIEAVLKQDKTAIVLVPEISLTPQM 330

Query: 210 YSEFKNFF 217
            S F + F
Sbjct: 331 TSRFISRF 338


>gi|47097085|ref|ZP_00234655.1| ATP-dependent DNA helicase RecQ, putative [Listeria monocytogenes
           str. 1/2a F6854]
 gi|254899361|ref|ZP_05259285.1| hypothetical protein LmonJ_06094 [Listeria monocytogenes J0161]
 gi|254912500|ref|ZP_05262512.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936827|ref|ZP_05268524.1| recS [Listeria monocytogenes F6900]
 gi|47014530|gb|EAL05493.1| ATP-dependent DNA helicase RecQ, putative [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258609422|gb|EEW22030.1| recS [Listeria monocytogenes F6900]
 gi|293590484|gb|EFF98818.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 467

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 12/106 (11%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           +K++AE     L E   +RV Y H ++ T +RI I +    G+ DV+   +    G+D  
Sbjct: 236 SKKLAESTAHELSEIAELRVAYYHGDMDTEDRIIIQQQFVYGQLDVICATSAFGMGIDKA 295

Query: 650 ECGLVA--ILDADKEGFLRSKTSLIQTIGRAARNVNSKV--ILYAD 691
           +   V    + AD E +L       Q IGRA R+    V  +LYA+
Sbjct: 296 DIRYVIHYHMPADLEAYL-------QEIGRAGRDGEESVAILLYAN 334


>gi|325570698|ref|ZP_08146424.1| ATP-dependent helicase RecQ [Enterococcus casseliflavus ATCC 12755]
 gi|325156544|gb|EGC68724.1| ATP-dependent helicase RecQ [Enterococcus casseliflavus ATCC 12755]
          Length = 588

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 97/241 (40%), Gaps = 31/241 (12%)

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +LL VDE+H  I Q    +R  + R   LAE                E W   +PT + +
Sbjct: 132 ALLAVDEAHC-ISQWGHDFRPSYLR---LAE--------------TIENWE-QKPTIVAL 172

Query: 529 SATPG---SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
           +AT     + ++E    I  E  ++ TG     +  +  + Q +D Y    L   QG   
Sbjct: 173 TATATPKVAEDIENLLSIPAENQVK-TGFARENLAFQVVKDQ-KDTYITTYLKMNQGQSG 230

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   T++  E +   L    + V Y H  +   ER     +    +  V+V  N    G
Sbjct: 231 IIYASTRKEVERIYHLLKHERVSVGYYHGGLSEEERSFFQEEFLYDRLQVMVATNAF--G 288

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV--NSKVILYADTITKSIQLAIDE 703
           + I +  +  ++ A   G L    S  Q  GRA R+   +  ++LYA    +  Q  ID+
Sbjct: 289 MGINKSNVRFVIHAQIPGNLE---SYYQEAGRAGRDGEPSDAILLYAPQDMQIQQFFIDQ 345

Query: 704 T 704
           +
Sbjct: 346 S 346


>gi|319775651|ref|YP_004138139.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|317450242|emb|CBY86458.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
          Length = 444

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++  
Sbjct: 250 RGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D        S  + +  IGR AR
Sbjct: 310 RGIDIDDVSHVMNFD-----LPYSADTYLHRIGRTAR 341


>gi|313623117|gb|EFR93386.1| ATP-dependent DNA helicase RecQ [Listeria innocua FSL J1-023]
          Length = 365

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 12/105 (11%)

Query: 591 TKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           +K++AE+  + L E   + V Y H +++T +RI I +    G+ D++   +    G+D  
Sbjct: 134 SKKLAENTAQELNEVLGLNVAYYHGDMETEDRIVIQQQFVYGQLDIICATSAFGMGIDKS 193

Query: 650 ECGLVA--ILDADKEGFLRSKTSLIQTIGRAARNVNSKV--ILYA 690
           +   V    + AD E +L       Q IGRA R+    V  +LYA
Sbjct: 194 DIRFVIHYHMPADLEAYL-------QEIGRAGRDGKESVAILLYA 231


>gi|306826942|ref|ZP_07460242.1| DNA replication factor Y [Streptococcus pyogenes ATCC 10782]
 gi|304430960|gb|EFM33969.1| DNA replication factor Y [Streptococcus pyogenes ATCC 10782]
          Length = 828

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQL 209
           Q +A+ ++++ I    K  L+ G+TGSGKT     +IEA+    + AIV+ P   L  Q+
Sbjct: 296 QASAVTEIVEQIGKPSKPFLIEGITGSGKTEVYLHIIEAVLKQDKTAIVLVPEISLTPQM 355

Query: 210 YSEFKNFF 217
            S F + F
Sbjct: 356 TSRFISRF 363


>gi|296125668|ref|YP_003632920.1| transcription-repair coupling factor [Brachyspira murdochii DSM
           12563]
 gi|296017484|gb|ADG70721.1| transcription-repair coupling factor [Brachyspira murdochii DSM
           12563]
          Length = 1244

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 91/214 (42%), Gaps = 19/214 (8%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           E ++ + G+ G       A +    ++ +I++       A L S+  NF           
Sbjct: 27  ENIKSITGLKGGSDALLFASL---FKKNSILIIKENESEAMLLSQSLNF----------- 72

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGS 286
              Y  P  Y P  DT    + S    I + R +    L+ +  CI++++++ I   I +
Sbjct: 73  ---YNIPNYYFPDYDTVPFTKMSPITDIAQERINILYRLINKEHCIIITTINAITRKIAN 129

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            E   ++ ++L IGD ++   L   L    Y  +     +GT  V G  ++IF     D 
Sbjct: 130 REDLKKLYIELHIGDKLDLDNLRLKLYDLGYVIEREVAEKGTASVRGSIVDIFSVEY-DN 188

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
             R+ MF ++IE I  F    G+  ++++ I IY
Sbjct: 189 PIRIEMFDDEIESIRLFNIEDGRSFKSIDNIIIY 222


>gi|262275596|ref|ZP_06053405.1| transcription-repair coupling factor [Grimontia hollisae CIP
           101886]
 gi|262219404|gb|EEY70720.1| transcription-repair coupling factor [Grimontia hollisae CIP
           101886]
          Length = 1154

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 90/214 (42%), Gaps = 22/214 (10%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP---HNAVEYFVSYYDYYQP 234
           G+    T+A + E   R  +++ P+   A +L  E K F     H   ++    YD + P
Sbjct: 26  GASLPLTVATLAEQQNRFILMVVPDNQTALKLQPEIKQFTGQECHVFPDWETLPYDNFSP 85

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQM 293
                        +  I+++I R+       L ++   I++  VS +       S+  Q 
Sbjct: 86  H------------QDIISDRIARLYQ-----LPQQTSGILLIPVSTLMQRVMPHSFLVQH 128

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            + +K GD +  ++L   L    Y+  D  I  G +   G  +++FP    +  +R+  F
Sbjct: 129 ALMVKKGDRLSLEKLRHQLELSGYRHVDQVIEHGEYASRGSILDLFPMG-SNQPYRIDFF 187

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            ++++ I EF P   +  + +++I +     + T
Sbjct: 188 DDEVDTIREFDPENQRSTQELDSINLLPAHEFPT 221


>gi|222100017|ref|YP_002534585.1| Transcription-repair coupling factor [Thermotoga neapolitana DSM
           4359]
 gi|221572407|gb|ACM23219.1| Transcription-repair coupling factor [Thermotoga neapolitana DSM
           4359]
          Length = 895

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q  + +  TVL ++  E+  E L    +RV  + S     ER EI+  L+ G+ DV++
Sbjct: 420 GKQVAVLVPTTVLARQHYENFKERLEPFGVRVELLDSSRTLRERKEILEGLKKGEIDVVI 479

Query: 638 GIN-LLREGLDIPECGLVAILDADKEG 663
           G + LL E ++  + GLV I +  K G
Sbjct: 480 GTHALLNERVEFSDLGLVIIDEEQKFG 506


>gi|205373335|ref|ZP_03226139.1| ATP-dependent DNA helicase recG [Bacillus coahuilensis m4-4]
          Length = 591

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           +  N++V  MH  +   E+ +++++      D+LV   ++  G+++P   ++ I DA++ 
Sbjct: 407 FGSNVKVGLMHGRLHPTEKEQVMKEFSEHSVDILVSTTVVEVGVNVPNATMMIIYDAERF 466

Query: 663 GFLRSKTSLIQTIGRAARN-VNSKVILYADTIT 694
           G     + L Q  GR  R    S  IL A+  T
Sbjct: 467 GL----SQLHQLRGRVGRGEEQSYCILLANPKT 495


>gi|167465040|ref|ZP_02330129.1| primosome assembly protein PriA [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 781

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 152 DQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAA 207
           +Q  A AQ+ + +   R +V L+ GVTGSGKT    + I+      R AIV+ P   L  
Sbjct: 278 EQAEAFAQIHRSLTEGRHQVFLIHGVTGSGKTEVYLQSIQTCLEQGREAIVLVPEISLTP 337

Query: 208 QLYSEFKNFF 217
           QL   FK  F
Sbjct: 338 QLVERFKGRF 347


>gi|94988964|ref|YP_597065.1| primosome assembly protein PriA [Streptococcus pyogenes MGAS9429]
 gi|94992857|ref|YP_600956.1| primosome assembly protein PriA [Streptococcus pyogenes MGAS2096]
 gi|94542472|gb|ABF32521.1| primosomal protein N' [Streptococcus pyogenes MGAS9429]
 gi|94546365|gb|ABF36412.1| Primosomal protein N' [Streptococcus pyogenes MGAS2096]
          Length = 803

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQL 209
           Q +A+ ++++ I    K  L+ G+TGSGKT     +IEA+    + AIV+ P   L  Q+
Sbjct: 271 QASAVTEIVEQIGKPSKPFLIEGITGSGKTEVYLHIIEAVLKQDKTAIVLVPEISLTPQM 330

Query: 210 YSEFKNFF 217
            S F + F
Sbjct: 331 TSRFISRF 338


>gi|145222538|ref|YP_001133216.1| transcription-repair coupling factor [Mycobacterium gilvum PYR-GCK]
 gi|145215024|gb|ABP44428.1| transcription-repair coupling factor [Mycobacterium gilvum PYR-GCK]
          Length = 1198

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           V L +G   +  E ++ LV   Y R D+   RG F V G  +++FP   E    RV  +G
Sbjct: 154 VTLTVGGEADFDETVARLVDLAYTRVDMVGKRGEFAVRGGILDLFPPTAEHPV-RVEFWG 212

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYA 381
           ++I E+  F     + I  +E   + A
Sbjct: 213 DEISEMRMFSVADQRSIPEIEIDTVIA 239


>gi|152976718|ref|YP_001376235.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152025470|gb|ABS23240.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 436

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 7/116 (6%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R ++E V + + L  Q  L I+ T  TK+MAE++   L ER ++V  +H ++   +R ++
Sbjct: 231 RNKIEIVKNML-LQFQPYLAIVFTN-TKKMAEEVANGLTERGLKVGRIHGDLSPRDRKKM 288

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++ +R  +F  +V  +L   G+DI   G+  +++ +    L      +  +GR AR
Sbjct: 289 MKQIRDLEFQYIVATDLAARGIDIE--GISHVINYEIPSDL---DFFVHRVGRTAR 339


>gi|58700123|ref|ZP_00374644.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58533361|gb|EAL57839.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 81

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 17/89 (19%)

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
           +A+ ET RRR+KQ EHN  HNI P+++ + I   +                 Q+ ++++ 
Sbjct: 5   VALRETERRRKKQEEHNILHNIIPKTIIKPISNTL-----------------QERAIAEP 47

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           K   +   LRKQM   A+NL FEEAARI+
Sbjct: 48  KVNTNKDDLRKQMIEHAENLEFEEAARIK 76


>gi|332030741|gb|EGI70417.1| Fanconi anemia group M protein [Acromyrmex echinatior]
          Length = 1326

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           K  ++I+ + D R    +VL+  ++  EGLD+ E  L+   D  +   +R    L+Q +G
Sbjct: 435 KQKQQIKALEDFRSNHVNVLISTSIGEEGLDVGEVDLIICFDVSQHSPIR----LVQRMG 490

Query: 677 RAARNVNSKVIL 688
           R  R  +  +I+
Sbjct: 491 RTGRKRDGHIIV 502


>gi|322392345|ref|ZP_08065806.1| primosome assembly protein PriA [Streptococcus peroris ATCC 700780]
 gi|321144880|gb|EFX40280.1| primosome assembly protein PriA [Streptococcus peroris ATCC 700780]
          Length = 798

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  ++LTE   E  I    + +  K      ++     G+ D+L+G  ++ +GLD P 
Sbjct: 559 TQKAYDELTELFPEARILRMDVDTTRKKGSHQTLLDQFGKGEADILLGTQMIAKGLDFPN 618

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAARNVNSKVIL 688
             LV +L+AD    L       R+   L Q  GRA R   +  +L
Sbjct: 619 VTLVGVLNADTALNLPDFRSSERTFQLLTQVAGRAGRAEKAGQVL 663


>gi|332654548|ref|ZP_08420291.1| ATP-dependent DNA helicase RecG [Ruminococcaceae bacterium D16]
 gi|332516512|gb|EGJ46118.1| ATP-dependent DNA helicase RecG [Ruminococcaceae bacterium D16]
          Length = 694

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            K  A+ L + ++  ++R+  +H +++  E+  ++     G  DVLV   ++  G+D+P 
Sbjct: 499 VKSYAQHLQDEVFP-DLRLALLHGKMRPREKDAVMAAFAAGDVDVLVSTTVVEVGVDVPN 557

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             L+ + +A++ G     + L Q  GR  R 
Sbjct: 558 AALIIVENAERFGL----SQLHQLRGRVGRG 584


>gi|307544803|ref|YP_003897282.1| transcription-repair coupling factor [Halomonas elongata DSM 2581]
 gi|307216827|emb|CBV42097.1| K03723 transcription-repair coupling factor (superfamily II
           helicase) [Halomonas elongata DSM 2581]
          Length = 1148

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 33/131 (25%)

Query: 605 RNIRVRYMHSEVKTLERI-----EIIRDLRLG---------------------KFDVLVG 638
           R  +V ++H+EVKT+E       E++ D R+G                     +F+VLV 
Sbjct: 807 RGGQVYFLHNEVKTIETAAETVRELVPDARVGVAHGQLPERSLERVMSDFYHKRFNVLVC 866

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + I  ADK G       L Q  GR  R+ +     YA  +T   +
Sbjct: 867 STIIETGIDVPSANTIVIQRADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPPPR 919

Query: 699 LAIDETTRRRE 709
               + T+R E
Sbjct: 920 AMTRDATKRLE 930


>gi|292655748|ref|YP_003535645.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
 gi|291371023|gb|ADE03250.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
          Length = 459

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           Y   R   V  + +E  T ER EI+   R G +D +V  N+L EG+D+P+  +  +L   
Sbjct: 357 YRISRRFLVPPITNETGTKERREILDRFRDGTYDTVVAANVLDEGVDVPDANVGILLSGS 416

Query: 661 KEGFLRSKTSLIQTIGRAAR 680
                 S+    Q +GR  R
Sbjct: 417 G-----SEREFTQRLGRILR 431


>gi|254774280|ref|ZP_05215796.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 542

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 4/143 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  E++ E L  R      ++ ++   +R   +  L+ G  D+LV  ++   
Sbjct: 231 MIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVAAR 290

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+     V  L+ D      S    I   GRA R  +   +L+     + +  AI++ 
Sbjct: 291 GLDVERISHV--LNYDIPHDTESYVHRIGRTGRAGR--SGTALLFVSPRERHLLKAIEKA 346

Query: 705 TRRREKQLEHNKKHNINPQSVKE 727
           TR+   + E     ++N Q V +
Sbjct: 347 TRQPLTEAELPTVEDVNAQRVAK 369


>gi|229817453|ref|ZP_04447735.1| hypothetical protein BIFANG_02716 [Bifidobacterium angulatum DSM
           20098]
 gi|229785242|gb|EEP21356.1| hypothetical protein BIFANG_02716 [Bifidobacterium angulatum DSM
           20098]
          Length = 1055

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           ER+ R R +  +    ER + ++DL   + D +  ++L  EG+D+P    + +L   K  
Sbjct: 513 ERHYRTRAITGKNSDEERRQAVKDLEENRLDYIFTVDLFNEGVDVPAINQIVMLRNTK-- 570

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
              S     Q +GR  R        Y D++T
Sbjct: 571 ---SSIVFTQQLGRGLRK-----FAYKDSVT 593


>gi|237809847|ref|YP_002894287.1| type III restriction protein res subunit [Tolumonas auensis DSM
           9187]
 gi|237502108|gb|ACQ94701.1| type III restriction protein res subunit [Tolumonas auensis DSM
           9187]
          Length = 1046

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 12/107 (11%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G+R L   +++  AE + +    + IR   + S+  + ER    + +R G+ +VL  +++
Sbjct: 558 GIRALAFCVSREHAEYMCKQFLLKGIRSDILTSD-NSNERYAKQQMIRAGEINVLFVVDI 616

Query: 642 LREGLDIPECGLVAILDADKEGFLR---SKTSLIQTIGRAARNVNSK 685
             EG+DIPE         D   FLR   S T  +Q +GR  R  + K
Sbjct: 617 FNEGVDIPE--------VDTLLFLRPTESLTIFLQQLGRGLRLADDK 655


>gi|221118846|ref|XP_002163229.1| PREDICTED: similar to Eukaryotic initiation factor 4A-II [Hydra
           magnipapillata]
          Length = 409

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++ + T+R  + L E L E+   V  MH ++   ER  I+++ R
Sbjct: 268 DLYDTMTIT-----QAVIFLNTRRKVDWLKEKLNEKLFTVSSMHGDMDQSERDLIMKEFR 322

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  +LL  G+D+ +  LV
Sbjct: 323 SGSSRVLITTDLLARGIDVQQVSLV 347


>gi|195493240|ref|XP_002094331.1| GE20258 [Drosophila yakuba]
 gi|194180432|gb|EDW94043.1| GE20258 [Drosophila yakuba]
          Length = 789

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 2/104 (1%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V  K  AE ++  L  +      +H ++   +R ++I   +  + D+LV  ++   
Sbjct: 517 VLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAAR 576

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GLDIP    V   D  ++  + + T  I   GRA    N+  ++
Sbjct: 577 GLDIPHIKNVVNYDTARD--IETHTHRIGRTGRAGEKGNAFTLV 618


>gi|197265670|ref|ZP_03165744.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197243925|gb|EDY26545.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 1148

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 60/303 (19%), Positives = 123/303 (40%), Gaps = 49/303 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFVSYYDYY 232
           +TG+     +A++ E    P +++AP+   A +L+ E + F      N  ++    YD +
Sbjct: 22  LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSF 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIYGIGSVE 288
            P   +      I    S   Q+  M+         +L++R     V   S ++G   V 
Sbjct: 82  SPHQEI------ISSRLSTLYQLPSMQRGVLIVPVNTLMQR-----VCPHSYLHGHALV- 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   +K G  + +  L + L    Y+  D  +  G +      +++FP   E   +
Sbjct: 130 --------MKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRSALLDLFPMGSEQ-PY 180

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + +    
Sbjct: 181 RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWR-DTF 235

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E++++     A+ + Q+++         G+  +   Y + L      EP P LF Y P +
Sbjct: 236 EVKRD-----AEHIYQQVS--------KGTLPAGIEYWQPLFF---SEPLPPLFSYFPAN 279

Query: 469 SLL 471
           +L+
Sbjct: 280 TLV 282



 Score = 37.7 bits (86), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|163801279|ref|ZP_02195178.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4]
 gi|159174768|gb|EDP59568.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4]
          Length = 472

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 553 GLVDPPVEIR------SARTQVEDVYDE---------INLAAQQGLR-ILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y           + L  +   R +L+   TK  A 
Sbjct: 198 GLVNNPVEISVNPANSTARTVEQSIYPSDAKKKAPMLVKLIKEGDWRQVLVFTRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
            L ++L +  +    +H       R + + D + G   VLV  ++   G+DIP+ 
Sbjct: 258 RLAKFLIDEKLPAAAIHGNKSQSARTKALADFKSGAIRVLVATDIAARGIDIPQL 312


>gi|146422655|ref|XP_001487263.1| hypothetical protein PGUG_00640 [Meyerozyma guilliermondii ATCC
           6260]
 gi|152013487|sp|A5DBI5|DBP5_PICGU RecName: Full=ATP-dependent RNA helicase DBP5
 gi|146388384|gb|EDK36542.1| hypothetical protein PGUG_00640 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 482

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 3/97 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK  A  L   +         +HS++   ER ++I D R G+  VL+  N+L  G
Sbjct: 334 IIFVKTKATANYLYAKMKSEGHACSILHSDLDNSERDKLIDDFREGRSKVLITTNVLARG 393

Query: 646 LDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
           +DI    +V   D   DK+      T L   IGR  R
Sbjct: 394 IDIASVSMVVNYDIPVDKDDKPDPSTYL-HRIGRTGR 429


>gi|94994844|ref|YP_602942.1| primosome assembly protein PriA [Streptococcus pyogenes MGAS10750]
 gi|94548352|gb|ABF38398.1| Primosomal protein N' [Streptococcus pyogenes MGAS10750]
          Length = 803

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQL 209
           Q +A+ ++++ I    K  L+ G+TGSGKT     +IEA+    + AIV+ P   L  Q+
Sbjct: 271 QASAVTEIVEQIGKPSKPFLIEGITGSGKTEVYLHIIEAVLKQDKTAIVLVPEISLTPQM 330

Query: 210 YSEFKNFF 217
            S F + F
Sbjct: 331 TSRFISRF 338


>gi|2558533|emb|CAA73349.1| putative RNA helicase (DEAD box) [Danio rerio]
          Length = 688

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R G+
Sbjct: 465 DLLNATGKDSL-TLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGR 523

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N K
Sbjct: 524 CPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDK 580


>gi|90961336|ref|YP_535252.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
 gi|90820530|gb|ABD99169.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
          Length = 492

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++    R+ ++R  + G  D+LV  ++   GLDI  
Sbjct: 249 TKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAARGLDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 307 SGVTHVYNYD---IPQDPESYVHRIGRTGR 333


>gi|15215678|gb|AAK91384.1| AT3g19760/MMB12_21 [Arabidopsis thaliana]
 gi|25090064|gb|AAN72219.1| At3g19760/MMB12_21 [Arabidopsis thaliana]
          Length = 408

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + L+E +   N  V  MH ++   ER  I+ + R
Sbjct: 267 DLYDTLTIT-----QAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFR 321

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 322 SGDSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 367


>gi|21910909|ref|NP_665177.1| primosome assembly protein PriA [Streptococcus pyogenes MGAS315]
 gi|21905115|gb|AAM79980.1| putative primosomal replication factor Y [Streptococcus pyogenes
           MGAS315]
          Length = 794

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQL 209
           Q +A+ ++++ I    K  L+ G+TGSGKT     +IEA+    + AIV+ P   L  Q+
Sbjct: 262 QASAVTEIVEQIGKPSKPFLIEGITGSGKTEVYLHIIEAVLKQDKTAIVLVPEISLTPQM 321

Query: 210 YSEFKNFF 217
            S F + F
Sbjct: 322 TSRFISRF 329


>gi|54295690|ref|YP_128105.1| primosomal protein N' (replication factor Y) [Legionella
           pneumophila str. Lens]
 gi|53755522|emb|CAH17021.1| Primosomal protein N' (replication factor Y) [Legionella
           pneumophila str. Lens]
          Length = 725

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKT----FTMAKVIEAMQRPAIVMAPNKILAA 207
           +Q  A+A + + IH  +   LL GVTGSGKT      +AK++E  ++  +V+ P   L  
Sbjct: 199 EQAVAVASIFEHIHHYQCF-LLQGVTGSGKTEVYLHVIAKILEQGKQ-VLVLVPEIGLTP 256

Query: 208 QLYSEFKNFFPH 219
           QL S F   F H
Sbjct: 257 QLLSRFTARFNH 268


>gi|329945971|ref|ZP_08293658.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528419|gb|EGF55397.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 557

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 19/162 (11%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A+   R ++   TKR A  + + L  R      +H ++    R + +R  R  K DVL
Sbjct: 312 LQAEGRGRTIIFARTKRTAARVADDLRARGFATAALHGDLGQGAREQALRAFRNDKVDVL 371

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD---- 691
           V  ++   G+D+ +   V      ++     +   +  IGR  R  NS   + + D    
Sbjct: 372 VATDVAARGIDVDDVTHVINYQCPED-----EKIYVHRIGRTGRAGNSGTAVTFVDWDDV 426

Query: 692 ----TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
                I K++ L I+E       +  H  +H  +  S+ EK+
Sbjct: 427 PRWRIIAKALGLPIEEPV-----ETYHTSEHLFSDLSIPEKV 463


>gi|299532849|ref|ZP_07046236.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni S44]
 gi|298719073|gb|EFI60043.1| ATP-dependent DNA helicase RecG [Comamonas testosteroni S44]
          Length = 701

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 600 EYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           EYL E    + V  +HS + T E+  ++     G   VLV   ++  G+D+P   L+ I 
Sbjct: 513 EYLSEMLPGVMVGLLHSRMPTAEKKAVMELFSAGVMGVLVSTTVIEVGVDVPNASLMVIE 572

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYA 690
            +++ G     + L Q  GR  R   +   V+LY+
Sbjct: 573 HSERFGL----SQLHQLRGRVGRGAAASACVLLYS 603


>gi|297571644|ref|YP_003697418.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931991|gb|ADH92799.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 741

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/80 (22%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            + +  +H ++   ++  ++ D+  G+  ++V   ++  G+DIP+  ++ I+DA++ G  
Sbjct: 556 GVAIGVVHGQMSAADKNAVMNDMAAGRVHLVVATTVIEVGVDIPDATVMVIMDAERFGL- 614

Query: 666 RSKTSLIQTIGRAARNVNSK 685
              + L Q  GR  R   +K
Sbjct: 615 ---SQLHQLRGRVGRGNKNK 631


>gi|296170155|ref|ZP_06851752.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295895181|gb|EFG74896.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 566

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 4/141 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  E++ E L  R      ++ ++   +R   +  L+ G  D+LV  ++   
Sbjct: 255 MIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVAAR 314

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+     V  L+ D      S    I   GRA R  +   +L+     + +  AI++ 
Sbjct: 315 GLDVERISHV--LNYDIPHDTESYVHRIGRTGRAGR--SGTALLFVSPRERHLLRAIEKA 370

Query: 705 TRRREKQLEHNKKHNINPQSV 725
           TR+   + E     ++N Q V
Sbjct: 371 TRQTLIEAELPTVEDVNAQRV 391


>gi|294631617|ref|ZP_06710177.1| ATP-dependent DNA helicase RecG [Streptomyces sp. e14]
 gi|292834950|gb|EFF93299.1| ATP-dependent DNA helicase RecG [Streptomyces sp. e14]
          Length = 740

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           + +RV  +H  +   ++  ++R    G  DVLV   ++  G+++P   ++ I DAD+ G 
Sbjct: 555 QGLRVEVLHGRMAPDDKDAVMRRFAAGDTDVLVATTVIEVGVNVPNATVMVITDADRFGV 614

Query: 665 LRSKTSLIQTIGRAARNVNSKVIL 688
               + L Q  GR  R     + L
Sbjct: 615 ----SQLHQLRGRVGRGSAPGLCL 634


>gi|296136148|ref|YP_003643390.1| transcription-repair coupling factor [Thiomonas intermedia K12]
 gi|295796270|gb|ADG31060.1| transcription-repair coupling factor [Thiomonas intermedia K12]
          Length = 1160

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 11/118 (9%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L E + E  I + +     + LER+  +RD    +F++L+   ++  G+D+P    + + 
Sbjct: 838 LEELVPEARIEIAHGQMHERDLERV--MRDFHAQRFNILLCTTIIETGIDVPSANTIVMA 895

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE--KQLE 713
            ADK G       L Q  GR  R+ +     YA  +   +Q    + ++R E  +Q+E
Sbjct: 896 RADKFGL----AQLHQLRGRVGRSHHQA---YAYLLVPDVQSLTKQASQRLEAIQQME 946


>gi|254580331|ref|XP_002496151.1| ZYRO0C11660p [Zygosaccharomyces rouxii]
 gi|238939042|emb|CAR27218.1| ZYRO0C11660p [Zygosaccharomyces rouxii]
          Length = 435

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE L   LY   +RV  +HS++   ER   +   R     VL+  ++   GLDIP   LV
Sbjct: 271 AEILRRTLYAMGVRVTSLHSQMPQQERTNSLHRFRANAARVLIATDVASRGLDIPTVQLV 330

Query: 655 AILD--ADKEGFLRSKTSLIQTIGRAAR 680
              D  +D + F       I   GR AR
Sbjct: 331 VNYDIPSDPDVF-------IHRSGRTAR 351


>gi|227487924|ref|ZP_03918240.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227092130|gb|EEI27442.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 718

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 9/151 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R    + ++ ++   +R   +  LR G+ D+LV  ++   
Sbjct: 352 MIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDILVATDVAAR 411

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R    + IL+     + +  +I+
Sbjct: 412 GLDVDRISHVLNYDIPHDTESYIHR----IGRTGRAGR--TGEAILFVTPRERRMLRSIE 465

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
             T    ++++      +N +S KEK  + I
Sbjct: 466 RVTNATLEEMQLPTVDEVN-ESRKEKFADSI 495


>gi|226355891|ref|YP_002785631.1| ATP-dependent DNA helicase RecG [Deinococcus deserti VCD115]
 gi|226317881|gb|ACO45877.1| putative ATP-dependent DNA helicase RecG [Deinococcus deserti
           VCD115]
          Length = 780

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +A+DL   L E   R+  +H  +   E+  ++   R  +FD+LV   ++  G+D+P   +
Sbjct: 588 LADDLKTILPE--ARIDLLHGRMSAAEKDHVMERFRAREFDLLVSTTVIEVGVDVPNATV 645

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITK 695
           + I +A++ G       L Q  GR  R +  S  +L A   +K
Sbjct: 646 MVIENAERFGL----AQLHQLRGRVGRGSAQSYCVLIAGEHSK 684


>gi|163793170|ref|ZP_02187146.1| RecG-like helicase [alpha proteobacterium BAL199]
 gi|159181816|gb|EDP66328.1| RecG-like helicase [alpha proteobacterium BAL199]
          Length = 693

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H  +K  E+  ++   + G  D+LV   ++  G+D+PE  ++ I  A++ G    
Sbjct: 510 RVGVLHGRLKGPEKDAVMDAFKNGTVDLLVATTVIEVGVDVPEATVMVIEHAERFGL--- 566

Query: 668 KTSLIQTIGRAARN--VNSKVILYADTITKS 696
              L Q  GR  R    ++ ++LY+  +T++
Sbjct: 567 -AQLHQLRGRIGRGDKASTCLLLYSSPLTET 596


>gi|139473323|ref|YP_001128038.1| primosome assembly protein PriA [Streptococcus pyogenes str.
           Manfredo]
 gi|134271569|emb|CAM29794.1| putative primosomal protein N' [Streptococcus pyogenes str.
           Manfredo]
          Length = 794

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQL 209
           Q +A+ ++++ I    K  L+ G+TGSGKT     +IEA+    + AIV+ P   L  Q+
Sbjct: 262 QASAVTEIVEQIGKPSKPFLIEGITGSGKTEVYLHIIEAVLKQDKTAIVLVPEISLTPQM 321

Query: 210 YSEFKNFF 217
            S F + F
Sbjct: 322 TSRFISRF 329


>gi|146309411|ref|YP_001189876.1| ATP-dependent DNA helicase RecG [Pseudomonas mendocina ymp]
 gi|145577612|gb|ABP87144.1| ATP-dependent DNA helicase RecG [Pseudomonas mendocina ymp]
          Length = 691

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E+L+  L E  +RV  +H  +K  E+  ++ + + G   +LV   ++  G+D+P   L+ 
Sbjct: 507 EELSAALGE--LRVGLIHGRMKPAEKAAVMDEFKQGHLQLLVATTVIEVGVDVPNASLMI 564

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           I + ++ G       L Q  GR  R   +   V+LY   +++
Sbjct: 565 IENPERLGL----AQLHQLRGRVGRGSAASHCVLLYHAPLSQ 602


>gi|147902002|ref|NP_001081728.1| probable ATP-dependent RNA helicase DDX4 [Xenopus laevis]
 gi|82217454|sp|Q91372|DDX4_XENLA RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog;
           AltName: Full=Vasa-like protein; Short=xVLG1
 gi|2896107|gb|AAC03114.1| DEAD box protein [Xenopus laevis]
 gi|213623390|gb|AAI69679.1| DEAD box protein [Xenopus laevis]
 gi|213626590|gb|AAI69677.1| DEAD box protein [Xenopus laevis]
          Length = 700

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 5/108 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L + +  R ++ V TK+ A+ +  YL +       +H + +  +R   + D R GK  V+
Sbjct: 521 LKSSEKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDFRTGKCTVI 580

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           V   +   GLDI     V   D  KE         +  IGR  R  N+
Sbjct: 581 VCTAVAARGLDIENVQHVINYDVPKE-----VDEYVHRIGRTGRCGNT 623


>gi|2190968|gb|AAB60938.1| DEAD-box RNA helicase [Dictyostelium discoideum]
          Length = 437

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 38/222 (17%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
           F +   L E  F +   M N P +    N L P+ + V     ++ +       VE++I+
Sbjct: 208 FLKMVVLDEADFIVK--MKNVPNQIAMINRLLPSNVKVCLFSATFSMG------VEELIK 259

Query: 551 PTGLVDPPVEIRSARTQVE----------------------DVYDEINLAAQQGLRILLT 588
              + DP   IR  R ++                       D+Y  I++   Q +  + T
Sbjct: 260 KI-VQDPYTSIRLKRQELSVEKIHQYFIDCGSEDNKALILSDIYGFISVG--QSIVFVHT 316

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHS-EVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           + T   A+ + + + +    V  ++  ++ T ER + I+D + GK  VL+  N+L  G+D
Sbjct: 317 IAT---AKSVHQKMVDEGHSVSLLYGKDLTTEERFKQIKDFKDGKSKVLITTNVLARGID 373

Query: 648 IPECGLVAILDADKEGFLR-SKTSLIQTIGRAARNVNSKVIL 688
           IP+  LV   D   +   +      +  IGR  R   S V L
Sbjct: 374 IPQVSLVINYDVPLDEMGKPDPVHYLHRIGRVGRFGRSGVAL 415


>gi|26348749|dbj|BAC38014.1| unnamed protein product [Mus musculus]
          Length = 579

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +   A++L   L    I V  +H+E    +R   +   R GK  VL+   LL  
Sbjct: 416 VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLAR 475

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           G+D     LV   D     F  S    I  IGR  R  N
Sbjct: 476 GIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGN 509


>gi|94985241|ref|YP_604605.1| ATP-dependent DNA helicase RecG [Deinococcus geothermalis DSM
           11300]
 gi|94555522|gb|ABF45436.1| ATP-dependent DNA helicase RecG [Deinococcus geothermalis DSM
           11300]
          Length = 776

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +A+DL   L E   R+  +H  +   E+  ++   R  +FDVLV   ++  G+D+P   +
Sbjct: 584 LADDLRVLLPE--ARIELLHGRMTAAEKDLVMERFRAREFDVLVSTTVIEVGVDVPNATV 641

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYA 690
           + I +A++ G     + L Q  GR  R +  S  IL A
Sbjct: 642 MVIENAERFGL----SQLHQLRGRVGRGSAQSYCILIA 675


>gi|319941449|ref|ZP_08015777.1| ATP-dependent DNA helicase RecG [Sutterella wadsworthensis 3_1_45B]
 gi|319805069|gb|EFW01899.1| ATP-dependent DNA helicase RecG [Sutterella wadsworthensis 3_1_45B]
          Length = 716

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R AE+L   L   ++RV  +H  +   E+  ++ D   G+ ++LV   ++  G+D+P   
Sbjct: 529 RCAEELAARLP--HVRVGLLHGAMSAAEKEAVMSDFAAGRIELLVATTVIEVGVDVPNAT 586

Query: 653 LVAILDADKEGF 664
           L+ I  A++ G 
Sbjct: 587 LMIIEHAERFGL 598


>gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
           stomatis DSM 17678]
          Length = 538

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 587 LTVL---TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           LTV+   TK+ A++L   L  R      +H ++K ++R  ++   R G  D+LV  ++  
Sbjct: 245 LTVVFTNTKKGADELVSSLQARGYGADSLHGDLKQVQRDIVMDKFRAGTIDILVATDVAA 304

Query: 644 EGLDIP--ECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI   EC +   L  D E ++      I   GRA R
Sbjct: 305 RGIDIDDVECVINYELPQDDEYYVHR----IGRTGRAGR 339


>gi|302370918|ref|NP_001180567.1| interferon-induced helicase C domain-containing protein 1 [Gallus
           gallus]
 gi|302128865|dbj|BAJ14020.1| melanoma differentiation associated protein-5 [Gallus gallus]
          Length = 1001

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 613 HSEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           +SE K +   E+ E+I   R G  ++L+   +  EGLDI EC +V      + G + ++ 
Sbjct: 734 NSETKPMTQNEQREVIDKFRGGSINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEI 788

Query: 670 SLIQTIGRA 678
           +++Q  GRA
Sbjct: 789 AMVQARGRA 797


>gi|304315659|ref|YP_003850804.1| DEAD/DEAH box helicase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302777161|gb|ADL67720.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 514

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  ++LTE +  R   V  MH ++   +RI  +R  + G  D LV  ++   G+DI  
Sbjct: 249 TKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGNLDFLVATDVAARGIDIE- 307

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             L  +++ +    + S    I   GRA R
Sbjct: 308 -NLTHVINYNLPQDVESYVHRIGRTGRANR 336


>gi|118094019|ref|XP_422189.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 625

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +L+ V  K  A+ L++ +++   ++   MHSE   +ER  I++ L   K++V+V   +L 
Sbjct: 453 VLVFVDCKLGADLLSDAVHKITGLQCTSMHSEKSQVERTAILQGLLQEKYEVIVSTGVLG 512

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+    LV   D        S    +  +GRA R
Sbjct: 513 RGLDLVNVKLVVNFDMPS-----SMDEYVHQVGRAGR 544


>gi|17537549|ref|NP_496973.1| hypothetical protein Y54G11A.3 [Caenorhabditis elegans]
 gi|4008449|emb|CAA22456.1| C. elegans protein Y54G11A.3, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 504

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 11/166 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T   V A  GS +L  C+   V Q          P + R  R  V ++ + +  A  Q  
Sbjct: 289 TKEAVMAVNGSLDLTSCKS--VTQFFEFV-----PHDSRFLR--VCEIVNFLTAAHGQNY 339

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++ V +K MA+ L+     + I  + +H      +R   +  LR G+  +LV  +L  
Sbjct: 340 KMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQILVATDLAS 399

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+D+P+  +  +L+ D    +      +   GRA R   +   L+
Sbjct: 400 RGIDVPD--ITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLW 443


>gi|73969111|ref|XP_850120.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 2 [Canis
           familiaris]
          Length = 652

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 15/158 (9%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GL +    +  +++ D   +  S    +  IGR AR+ N K   Y      +
Sbjct: 394 IATDVASRGLGLDVEDVKFVINYD---YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 449

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 450 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 476


>gi|74177868|dbj|BAE39019.1| unnamed protein product [Mus musculus]
          Length = 595

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +   A++L   L    I V  +H+E    +R   +   R GK  VL+   LL  
Sbjct: 416 VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLAR 475

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           G+D     LV   D     F  S    I  IGR  R  N
Sbjct: 476 GIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGN 509


>gi|50289021|ref|XP_446940.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661294|sp|Q6FS54|DBP3_CANGA RecName: Full=ATP-dependent RNA helicase DBP3
 gi|49526249|emb|CAG59873.1| unnamed protein product [Candida glabrata]
          Length = 540

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 57/127 (44%), Gaps = 9/127 (7%)

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           +VDP    RS   ++ D+  +     ++  ++L+  L K+ A  +   L     +V  +H
Sbjct: 352 VVDP----RSKERKLLDLLKKYQSGPKKNDKVLIFALYKKEASRVERNLNYNGYKVAAIH 407

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            ++   +R + + + + GK ++L+  ++   GLDIP    V  L      F  +    + 
Sbjct: 408 GDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLT-----FPLTVEDYVH 462

Query: 674 TIGRAAR 680
            IGR  R
Sbjct: 463 RIGRTGR 469


>gi|312128223|ref|YP_003993097.1| transcription-repair coupling factor [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778242|gb|ADQ07728.1| transcription-repair coupling factor [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 1141

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 125/314 (39%), Gaps = 27/314 (8%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L  G  ++ + L+  L+K  Y+R      +G F   G  ++I+P        R+  FG
Sbjct: 131 IHLTEGLDIQLEILIEKLLKFGYERVKTVEKKGQFSQKGGIVDIYPVA-SRYPVRIEFFG 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           + I+ I  F   T +    ++++KIY    +       +  +K +KE+ K   ++L+++G
Sbjct: 190 DTIDTIRLFDVETQKSFERIDSVKIYKAIEW-DLEEDFSEGLKRVKEDYKKMKLKLKEDG 248

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           R    + LE+     +E L+          Y ++ +  +           I  + L+FVD
Sbjct: 249 R----KNLEESFREVVEELQLNVERLYPYYYQQFFSVID-----------IFGECLIFVD 293

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           E +     +    +      + L E GF LP   D      E       T I+ +     
Sbjct: 294 EYNQVYSSLKAFEQEMQEMFSDLLEKGFVLPKMADCYFTVNEILQKFSSTIILQTFASSI 353

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
            ELE  + II     R         E+ +   Q E + D++     +   I +   ++  
Sbjct: 354 KELE-LREIISFNFFR---------ELPTYNAQKEVLIDDLKYYMSKNYTINIFTGSRTS 403

Query: 595 AEDLTEYLYERNIR 608
            EDL E L + NI+
Sbjct: 404 LEDLEEALLKENIQ 417


>gi|307611738|emb|CBX01443.1| Primosomal protein N' [Legionella pneumophila 130b]
          Length = 725

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKT----FTMAKVIEAMQRPAIVMAPNKILAA 207
           +Q  A+A + + IH  +   LL GVTGSGKT      +AK++E  ++  +V+ P   L  
Sbjct: 199 EQAVAVASIFEHIHHYQCF-LLQGVTGSGKTEVYLHVIAKILEQGKQ-VLVLVPEIGLTP 256

Query: 208 QLYSEFKNFFPH 219
           QL S F   F H
Sbjct: 257 QLLSRFTARFNH 268


>gi|294340382|emb|CAZ88763.1| Transcription-repair coupling factor (TRCF) (ATP-dependent helicase
           mfd) [Thiomonas sp. 3As]
          Length = 1160

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 11/118 (9%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L E + E  I + +     + LER+  +RD    +F++L+   ++  G+D+P    + + 
Sbjct: 838 LEELVPEARIEIAHGQMHERDLERV--MRDFHAQRFNILLCTTIIETGIDVPSANTIVMA 895

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE--KQLE 713
            ADK G       L Q  GR  R+ +     YA  +   +Q    + ++R E  +Q+E
Sbjct: 896 RADKFGL----AQLHQLRGRVGRSHHQA---YAYLLVPDVQSLTKQASQRLEAIQQME 946


>gi|284045153|ref|YP_003395493.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283949374|gb|ADB52118.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 707

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 6/75 (8%)

Query: 147 YHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKT----FTMAKVIEAMQRPAIVMAP 201
           + P+GDQ  A+ Q+   I H R   +LL+G  GSGKT    F + + +E   + A+ MAP
Sbjct: 278 FAPTGDQQRAMEQVDADIAHERPMQRLLMGEVGSGKTVVALFALLRAVEQGWQGAL-MAP 336

Query: 202 NKILAAQLYSEFKNF 216
            + LA Q ++  +  
Sbjct: 337 TETLAEQHFATIQAL 351


>gi|260774135|ref|ZP_05883050.1| ATP-dependent RNA helicase RhlE [Vibrio metschnikovii CIP 69.14]
 gi|260611096|gb|EEX36300.1| ATP-dependent RNA helicase RhlE [Vibrio metschnikovii CIP 69.14]
          Length = 383

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVYDE---------INLAAQQGLR-ILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y           + L  +   + +L+ + TK  A 
Sbjct: 125 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQVLVFMRTKHGAN 184

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L  YL E+ +    +H       R   + D + G   +LV  ++   G+DIP+
Sbjct: 185 RLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGDIRILVATDIAARGIDIPQ 238


>gi|191637817|ref|YP_001986983.1| ComF operon protein 1 (ATP-dependent helicase comFA) [Lactobacillus
           casei BL23]
 gi|190712119|emb|CAQ66125.1| ComF operon protein 1 (ATP-dependent helicase comFA) [Lactobacillus
           casei BL23]
 gi|327381883|gb|AEA53359.1| Helicase domain protein [Lactobacillus casei LC2W]
 gi|327385045|gb|AEA56519.1| Helicase domain protein [Lactobacillus casei BD-II]
          Length = 421

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E I   R  +  VLV   +L  G+ +P+C +  +  AD+     + ++L+Q  GRA R
Sbjct: 332 RAEKITAFRQRQIQVLVTTTILERGVTVPKCAVGVVAAADRA---FTASALVQIAGRAGR 388

Query: 681 NVNSK---VILYADTITKSIQLA 700
             +S    V+ + D  T ++  A
Sbjct: 389 AADSADDPVVFFTDRYTLALLAA 411


>gi|163840526|ref|YP_001624931.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162954002|gb|ABY23517.1| RecG [Renibacterium salmoninarum ATCC 33209]
          Length = 733

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 10/103 (9%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
             R+  +H  +   ++ +++ D   G   VLV   ++  G+D+    L+ ILDAD+ G  
Sbjct: 549 GCRIEALHGRLDPTQKSQVMADFAAGGVQVLVSTTVVEVGVDVHNATLMIILDADRFGI- 607

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
              + L Q  GR  R       L         +LA +  +RRR
Sbjct: 608 ---SQLHQLRGRVGRGGLPGTALLV------TELAPEHPSRRR 641


>gi|145630403|ref|ZP_01786184.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|260582313|ref|ZP_05850106.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
 gi|144984138|gb|EDJ91575.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|260094681|gb|EEW78576.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
          Length = 444

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++  
Sbjct: 250 RGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D        S  + +  IGR AR
Sbjct: 310 RGIDIDDVSHVMNFD-----LPYSADTYLHRIGRTAR 341


>gi|219850580|ref|YP_002465013.1| transcription-repair coupling factor [Chloroflexus aggregans DSM
           9485]
 gi|219544839|gb|ACL26577.1| transcription-repair coupling factor [Chloroflexus aggregans DSM
           9485]
          Length = 1182

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +AE L   + E  I V +     + LER+  + D   G++DVLV   ++  GLD+P    
Sbjct: 838 VAERLRRLVPEARIAVGHGQLAERNLERV--MMDFFEGRYDVLVCTTIIESGLDVPNANT 895

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           + I DA   G       L Q  GR  R   
Sbjct: 896 IIIDDATHYGL----AQLYQLRGRVGRGAT 921


>gi|90577457|ref|ZP_01233268.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90440543|gb|EAS65723.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 654

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 275 IVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVVARG 334

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 335 LDVPR--ITHVFNYDIPFDVESYIHRIGRTGRAGR--TGKAILLVRTNQIRMLRTIERVT 390

Query: 706 RRREKQLE 713
           + R ++++
Sbjct: 391 KSRMEEIQ 398


>gi|197099360|ref|NP_001124720.1| ATP-dependent RNA helicase DDX3Y [Pongo abelii]
 gi|73620771|sp|Q5RF43|DDX3Y_PONAB RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|55725665|emb|CAH89614.1| hypothetical protein [Pongo abelii]
          Length = 658

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +LV   +   G
Sbjct: 443 LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 502

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           LDI     V   D  +D E ++    +T  +  +G A    N K +     ITK +
Sbjct: 503 LDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNM----NITKDL 554


>gi|119357864|ref|YP_912508.1| ATP-dependent DNA helicase RecG [Chlorobium phaeobacteroides DSM
           266]
 gi|119355213|gb|ABL66084.1| ATP-dependent DNA helicase RecG [Chlorobium phaeobacteroides DSM
           266]
          Length = 707

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H  + T  +  ++ + R G+ DVLVG  ++  G+D+P   ++ I  A++ G  
Sbjct: 523 DLRLGLIHGRMTTESKESVMDEFRNGRIDVLVGTTVIEVGVDVPNATIMMIEHAERFGL- 581

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R 
Sbjct: 582 ---AQLHQLRGRVGRG 594


>gi|332795880|ref|YP_004457380.1| DNA or RNA helicases of superfamily II [Acidianus hospitalis W1]
 gi|332693615|gb|AEE93082.1| DNA or RNA helicases of superfamily II [Acidianus hospitalis W1]
          Length = 663

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 14/123 (11%)

Query: 589 VLTKRMAEDLTEYLYERNI------RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           + T R A   T Y +E+ I      R++ +  +    ER ++++  + G+ DV++   + 
Sbjct: 301 IFTSRKA---TAYEFEKAIEDLDPGRIKVLTGDSSKFERQKLVKSAKRGEIDVIISTLVG 357

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            EG+DIPE  L+ + D       +S     Q +GR  R+   +   Y++   K + +A+ 
Sbjct: 358 EEGIDIPEAKLLIMTDVP-----QSPLRFYQRLGRLIRSKTDENNNYSENTLKYLVVALT 412

Query: 703 ETT 705
             T
Sbjct: 413 PKT 415


>gi|291191927|gb|ADD83027.1| melanoma differentiation-associated protein 5 [Gallus gallus]
          Length = 1001

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 613 HSEVKTL---ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           +SE K +   E+ E+I   R G  ++L+   +  EGLDI EC +V      + G + ++ 
Sbjct: 734 NSETKPMTQNEQREVIDKFRGGSINLLIATTVAEEGLDIKECNIVI-----RYGLVTNEI 788

Query: 670 SLIQTIGRA 678
           +++Q  GRA
Sbjct: 789 AMVQARGRA 797


>gi|302817066|ref|XP_002990210.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
 gi|300142065|gb|EFJ08770.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
          Length = 640

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 10/119 (8%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I +  + G  I+ T  TKR AE+++  +  R +    +H ++   +R + +   R G+
Sbjct: 242 DVITVYGKGGKTIVFTQ-TKRDAEEVSMAM-NRTLGCEALHGDIAQFQREKTLAAFREGR 299

Query: 633 FDVLVGINLLREGLDIPECGLVAILDA--DKEGFL-RSKTSLIQTIGRAARNVNSKVIL 688
           F +LV  ++   GLDI +  L+   D   D E F+ RS  +     GRA ++ ++ V  
Sbjct: 300 FLILVATDVAARGLDITDVDLIIHYDLPRDSETFVHRSGRT-----GRAGKDGSALVFF 353


>gi|260945443|ref|XP_002617019.1| hypothetical protein CLUG_02463 [Clavispora lusitaniae ATCC 42720]
 gi|238848873|gb|EEQ38337.1| hypothetical protein CLUG_02463 [Clavispora lusitaniae ATCC 42720]
          Length = 341

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 9/108 (8%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++L     + +++ V   R AE L   L + + RV  +HSE+   ER   +   +     
Sbjct: 151 LSLEKYATVNVIIFVNRTRTAELLRRTLRKLDFRVASLHSEMPQSERTSSLHRFKAQAAR 210

Query: 635 VLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
           +L+  ++   GLDIP   LV   D  AD + F       I  +GR AR
Sbjct: 211 ILIATDVASRGLDIPTVELVINYDLPADPDDF-------IHRVGRTAR 251


>gi|167615859|ref|ZP_02384494.1| ATP-dependent helicase, DEAD/DEAH family protein [Burkholderia
           thailandensis Bt4]
          Length = 597

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612
           PPV +    A    E +YD +   A      L+ V T+RMAE    +L +R     +   
Sbjct: 256 PPVPLGPVMANDVWERLYDRVAELAAAHRTTLVFVNTRRMAERAARHLADRLGPDAIAAH 315

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +
Sbjct: 316 HGSLAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVDLVCQL-----GSPRGIAPFL 370

Query: 673 QTIGRAARNVNS 684
           Q +GR+  +V  
Sbjct: 371 QRVGRSGHHVGG 382


>gi|156540308|ref|XP_001599155.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 488

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 15/120 (12%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+ A  L++ + +    V  +  ++   +RI ++   R G   VL+  N+L  G+D+ +
Sbjct: 351 TKKTACWLSDKMTQDGHSVAILSGDLTVEDRISVLDRFREGLEKVLITTNVLARGIDVEQ 410

Query: 651 CGLVAILD--------ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
             +V   D        AD E +L         IGR  R  NS V +     T+S+Q+  D
Sbjct: 411 VTIVVNFDLPVDQNQQADYETYLHR-------IGRTGRFGNSGVAINLVDSTRSMQICQD 463


>gi|150864502|ref|XP_001383340.2| ATP-dependent DNA helicase [Scheffersomyces stipitis CBS 6054]
 gi|149385758|gb|ABN65311.2| ATP-dependent DNA helicase [Scheffersomyces stipitis CBS 6054]
          Length = 385

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L ++ I  +Y+       ER EI+ D + G+  VL  +++  EG DIP    + + 
Sbjct: 287 LCAELQKQGINAQYVTGLTNKTERAEILADFKSGEIAVLCNVSVFTEGTDIPNIDSLFLG 346

Query: 658 DADKEGFLRSKTSLIQTIGRAAR----NVNSKVILYADTITKSI 697
              K     S+  L+Q IGR  R      +  VI  A T++  I
Sbjct: 347 RPTK-----SRPLLVQMIGRGLRLHEKKTHCHVIDIASTMSTGI 385


>gi|19746554|ref|NP_607690.1| primosome assembly protein PriA [Streptococcus pyogenes MGAS8232]
 gi|19748766|gb|AAL98189.1| putative primosomal replication factor Y [Streptococcus pyogenes
           MGAS8232]
          Length = 794

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQL 209
           Q +A+ ++++ I    K  L+ G+TGSGKT     +IEA+    + AIV+ P   L  Q+
Sbjct: 262 QASAVTEIVEQIGKPSKPFLIEGITGSGKTEVYLHIIEAVLKQDKTAIVLVPEISLTPQM 321

Query: 210 YSEFKNFF 217
            S F + F
Sbjct: 322 TSRFISRF 329


>gi|22296555|ref|NP_680515.1| putative helicase [Lactobacillus phage A2]
 gi|6599324|emb|CAB63670.1| putative helicase [Lactobacillus phage A2]
          Length = 455

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 10/76 (13%)

Query: 612 MHSEVKTL--ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           +H++ KT   +R  I+ D + GK  +L  ++L+ EG ++P+ G++ +        LR   
Sbjct: 243 VHADAKTPKGQRDRIMADFKAGKITILSNVDLISEGFNVPDVGVIIM--------LRPTA 294

Query: 670 SLIQTIGRAARNVNSK 685
           SL+  I ++ R +  K
Sbjct: 295 SLVLDIQQSMRGMRYK 310


>gi|34582313|sp|Q8K301|DDX52_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX52; AltName:
           Full=ATP-dependent RNA helicase ROK1-like; AltName:
           Full=DEAD box protein 52
 gi|20809366|gb|AAH29094.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Mus musculus]
          Length = 598

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R  E   E +YE  I V  +H+E    +R   +   R GK  VL+   LL  G+D    
Sbjct: 424 ERAKELFHELIYE-GINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGV 482

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            LV   D     F  S    I  IGR  R  N
Sbjct: 483 NLVINYD-----FPTSSVEYIHRIGRTGRAGN 509


>gi|330984088|gb|EGH82191.1| transcription-repair coupling protein Mfd [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 1098

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N R+  +H +++  E  +I+   R  ++D+LVG  ++  G+D+P    + +  AD  G L
Sbjct: 795 NARIAMVHGDMREDEMFDIMLAFRNREYDILVGTTVIEIGIDVPNANTLIVEKADALG-L 853

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
                L   +GR+ R   + ++    T   +++L
Sbjct: 854 GQLHQLRGRVGRSTRQAYAYLLSNVSTGVANMRL 887


>gi|326334345|ref|ZP_08200559.1| primosome assembly protein PriA [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325693504|gb|EGD35429.1| primosome assembly protein PriA [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 816

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 21/27 (77%)

Query: 634 DVLVGINLLREGLDIPECGLVAILDAD 660
           D+L+G  ++ +GLD PE GLV I++AD
Sbjct: 619 DILIGTQMVSKGLDFPEVGLVGIMNAD 645


>gi|325000518|ref|ZP_08121630.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
          Length = 547

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +GL ++ T  TKR A+ + + L ER      +H ++    R + +R  R  K DVLV
Sbjct: 316 AKDRGLSMIFT-RTKRTAQRVADDLAERGFAAAAVHGDLGQGAREQALRAFRAEKVDVLV 374

Query: 638 GINLLREGLDI 648
             ++   G+D+
Sbjct: 375 ATDVAARGIDV 385


>gi|322493239|emb|CBZ28524.1| putative DEAD box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 389

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++YD + +A       ++   T++  E L + +      V  MH ++   ER EI+R  R
Sbjct: 248 ELYDSLTIA-----HAVVFCNTRKKVEQLAKKMTREKFAVTAMHGDMPQAERDEIMRQFR 302

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  +L   G+D+    LV   D        S+   I  IGR  R
Sbjct: 303 NGHSRVLITTDLWARGIDVERVSLVLSYD-----LPLSREQYIHRIGRTGR 348


>gi|302821639|ref|XP_002992481.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
 gi|300139683|gb|EFJ06419.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
          Length = 641

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 10/119 (8%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I +  + G  I+ T  TKR AE+++  +  R +    +H ++   +R + +   R G+
Sbjct: 260 DVITVYGKGGKTIVFT-QTKRDAEEVSMAM-NRTLGCEALHGDIAQFQREKTLAAFREGR 317

Query: 633 FDVLVGINLLREGLDIPECGLVAILDA--DKEGFL-RSKTSLIQTIGRAARNVNSKVIL 688
           F +LV  ++   GLDI +  L+   D   D E F+ RS  +     GRA ++ ++ V  
Sbjct: 318 FLILVATDVAARGLDITDVDLIIHYDLPRDSETFVHRSGRT-----GRAGKDGSALVFF 371


>gi|326201982|ref|ZP_08191852.1| ATP-dependent DNA helicase RecG [Clostridium papyrosolvens DSM
           2782]
 gi|325987777|gb|EGD48603.1| ATP-dependent DNA helicase RecG [Clostridium papyrosolvens DSM
           2782]
          Length = 690

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 48/87 (55%), Gaps = 5/87 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AED+++ ++ R++ V  +H ++K+ E+  I++    G+  +LV   ++  G+++P   ++
Sbjct: 502 AEDISKSVF-RDLNVGIIHGKMKSSEKEAIMKSFVSGEISILVSTTIIEVGVNVPNATVM 560

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681
            I +A++ G       L Q  GR  R 
Sbjct: 561 IIENAERFGL----AQLHQLRGRVGRG 583


>gi|219669851|ref|YP_002460286.1| ATP-dependent DNA helicase RecG [Desulfitobacterium hafniense
           DCB-2]
 gi|219540111|gb|ACL21850.1| ATP-dependent DNA helicase RecG [Desulfitobacterium hafniense
           DCB-2]
          Length = 805

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 602 LYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           L ER  N RV  +H  +K +++ EI+   + G+ D+LV   ++  G+++P   ++ I  A
Sbjct: 626 LLERFPNRRVSLLHGRMKGVQKEEIMTAFQKGEVDILVSTTVVEVGVNVPNATVMVIEGA 685

Query: 660 DKEGFLRSKTSLIQTIGRAARN 681
           ++ G       L Q  GR  R 
Sbjct: 686 ERFGL----AQLHQLRGRVGRG 703


>gi|254477171|ref|ZP_05090557.1| primosomal protein N', putative [Ruegeria sp. R11]
 gi|214031414|gb|EEB72249.1| primosomal protein N', putative [Ruegeria sp. R11]
          Length = 731

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 152 DQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFTMAKVIEAMQRP---AIVMAPNKILAA 207
           DQ AA A+L +G+ S R    LL GVTGSGKT    + + A  R    A+V+ P   L A
Sbjct: 200 DQAAAAARLGEGVASGRYGTTLLKGVTGSGKTEVYLEAVAAALRAGRQALVLLPEIALTA 259

Query: 208 QLYSEFKNFFPHNAVEY 224
           +     +  F     E+
Sbjct: 260 EFLKRVEQRFGATPAEW 276


>gi|254424111|ref|ZP_05037829.1| Type III restriction enzyme, res subunit family [Synechococcus sp.
           PCC 7335]
 gi|196191600|gb|EDX86564.1| Type III restriction enzyme, res subunit family [Synechococcus sp.
           PCC 7335]
          Length = 516

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 8/93 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  I++  R G + V+V  ++L EG+D+P+  +  +L         S    IQ +GR  
Sbjct: 368 ERHTILQKFRGGDYSVIVVSHVLNEGVDVPDARIAILLSGSG-----STREYIQRLGRVL 422

Query: 680 RNVN-SKVILYADTITKSIQLAIDETTRRREKQ 711
           R  N  KV L  + + +  Q + +  ++RR++Q
Sbjct: 423 RKGNDGKVALLYEVVAE--QTSEEGVSKRRKQQ 453


>gi|161528452|ref|YP_001582278.1| DEAD/DEAH box helicase domain-containing protein [Nitrosopumilus
           maritimus SCM1]
 gi|160339753|gb|ABX12840.1| DEAD/DEAH box helicase domain protein [Nitrosopumilus maritimus
           SCM1]
          Length = 502

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  ++IEI++  R G FDVL+   +  EGLDI E   V   D      + S    IQ  
Sbjct: 385 LKQKKQIEIVQKFRDGIFDVLIATRVGEEGLDIAEVNQVIFYDN-----VPSSVRFIQRR 439

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDET 704
           GR  R    K+++    I K+    IDET
Sbjct: 440 GRTGRKDTGKLVVL---IAKN---TIDET 462


>gi|110679362|ref|YP_682369.1| primosome assembly protein PriA [Roseobacter denitrificans OCh 114]
 gi|109455478|gb|ABG31683.1| primosomal protein N' [Roseobacter denitrificans OCh 114]
          Length = 720

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 150 SGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKIL 205
           + DQ A  AQL + + S R    LL GVTGSGKT    + + A     R A+V+ P   L
Sbjct: 187 TADQAAGAAQLTQAVRSERYGTTLLRGVTGSGKTEVYLEAVAAALTAGRQALVLLPEIAL 246

Query: 206 AAQLYSEFKNFFPHNAVEY 224
            A+  +  +  F     E+
Sbjct: 247 TAEFLTRVQERFGARPAEW 265


>gi|104532230|gb|ABF72910.1| eukaryotic translation initiation factor 4A-like [Belgica
           antarctica]
          Length = 138

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LTE +  +N  V  MH E+   ER  I++  R G   VL+  +LL  G+ + +
Sbjct: 13  TRRKVDQLTEDMTAKNFTVSAMHEEMDQRERDMIMKQFRSGSSRVLITTDLLARGIGVQQ 72

Query: 651 CGLV 654
             +V
Sbjct: 73  VSIV 76


>gi|41282082|ref|NP_571016.2| pl10 [Danio rerio]
 gi|37590512|gb|AAH59794.1| Pl10 [Danio rerio]
          Length = 688

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R G+
Sbjct: 465 DLLNATGKDSL-TLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGR 523

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N K
Sbjct: 524 CPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDK 580


>gi|148226210|ref|NP_001079530.1| similar to ATP-dependent, RNA helicase [Xenopus laevis]
 gi|27882196|gb|AAH44017.1| MGC53409 protein [Xenopus laevis]
          Length = 686

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  E   E +YE  I V  +H+E    +R  +I+  R GK  VL+   LL  G+D     
Sbjct: 501 RAKELFHELIYE-GINVDVIHAERTQQQRDNVIQSFREGKIWVLICTALLARGIDFKGVN 559

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +V   D     F  S    I  IGR  R
Sbjct: 560 MVINYD-----FPTSAVEYIHRIGRTGR 582


>gi|42525103|ref|NP_970483.1| primosomal replication factor Y [Bdellovibrio bacteriovorus HD100]
 gi|39577314|emb|CAE81137.1| similar to primosomal replication factor Y [Bdellovibrio
           bacteriovorus HD100]
          Length = 681

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGLDIP 649
           T+ +  DLT     + I  R    E+++   +E +I ++  G  D+LVG  ++ +GLD P
Sbjct: 434 TELLETDLTRLFPGKKI-ARADRDEIQSRADLEDLIANMESGDIDILVGTQMIAKGLDFP 492

Query: 650 ECGLVAILDADKEGF--------LRSKTSLIQTIGRAARNV 682
           +  LV ++ AD  GF         RS   + Q  GR+ R+V
Sbjct: 493 KLKLVGLVLADV-GFNLPDFRATERSFQLITQMSGRSGRHV 532


>gi|331269673|ref|YP_004396165.1| ATP-dependent DNA helicase RecG [Clostridium botulinum BKT015925]
 gi|329126223|gb|AEB76168.1| ATP-dependent DNA helicase RecG [Clostridium botulinum BKT015925]
          Length = 673

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y  N+ V  +H ++ +  + EI+   ++GK +VL+   ++  G+++P   L+ I  A++ 
Sbjct: 491 YFNNVEVEILHGKMPSKSKDEIMERFKMGKTEVLISTTVIEVGVNVPNATLMIIESAERF 550

Query: 663 GFLRSKTSLIQTIGRAAR 680
           G     + L Q  GR  R
Sbjct: 551 GL----SQLHQLRGRVGR 564


>gi|309792441|ref|ZP_07686906.1| primosomal protein N' [Oscillochloris trichoides DG6]
 gi|308225513|gb|EFO79276.1| primosomal protein N' [Oscillochloris trichoides DG6]
          Length = 848

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 170 VQLLLGVTGSGKTFTMAKVI-EAMQ--RPAIVMAPNKILAAQLYSEFKNFFP 218
           V LL GVTGSGKT    +VI  AM+  R A+V+ P   L AQL   F   FP
Sbjct: 317 VFLLHGVTGSGKTEIYLRVIARAMRLGRQALVLVPEIALTAQLVRRFAARFP 368


>gi|284929234|ref|YP_003421756.1| ATP-dependent DNA helicase RecG [cyanobacterium UCYN-A]
 gi|284809678|gb|ADB95375.1| ATP-dependent DNA helicase RecG [cyanobacterium UCYN-A]
          Length = 813

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +H  +  LE+ +++ D R  K+ ++V   ++  G+DIP   ++ I +A++ G     + L
Sbjct: 645 LHGRLNALEKNKVLNDFRDNKYQIMVSTTVIEVGVDIPNATVMLIENAERFGL----SQL 700

Query: 672 IQTIGRAARN 681
            Q  GR  R+
Sbjct: 701 HQLRGRVGRS 710


>gi|163803785|ref|ZP_02197639.1| putative ATP-dependent DNA helicase RecQ [Vibrio sp. AND4]
 gi|159172404|gb|EDP57276.1| putative ATP-dependent DNA helicase RecQ [Vibrio sp. AND4]
          Length = 488

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 91/232 (39%), Gaps = 36/232 (15%)

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           SL+ VDE+H  I +    +R D+           +LP           E N  +   +  
Sbjct: 134 SLMVVDEAHC-ISEWGHNFRPDY----------LKLPQYQ-------RELNIPQTLLLTA 175

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDP-------PVEIRSARTQVEDVYDEINLAAQQ 581
           +ATP   E  Q +  I  + I  TG   P       P +    +TQ+ D+     +AA  
Sbjct: 176 TATPAVIEDMQSKFNIAHENITVTGFYRPNLDLSMVPCDEEHKQTQLNDI-----IAASP 230

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
            L  ++ V  ++ AE +   L    I     H+ +K+  R +I +     + D +V    
Sbjct: 231 KLPSIVYVTQQQTAEQVASSLIRLGINAHAYHAGMKSDVREKIQQQFMDSQIDCIVATIA 290

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADT 692
              G+D  +   V   D  K     S  +  Q IGRA R+   S+ IL  +T
Sbjct: 291 FGMGVDKSDIRRVIHFDLPK-----SIENYAQEIGRAGRDGQRSECILLGNT 337


>gi|114667864|ref|XP_001173161.1| PREDICTED: ATP-dependent RNA helicase ROK1 isoform 3 [Pan
           troglodytes]
          Length = 507

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R  E   E +YE  I V  +H+E    +R   +   R GK  VL+   LL  G+D    
Sbjct: 331 ERAKELFHELIYE-GINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGV 389

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            LV   D     F  S    I  IGR  R  N
Sbjct: 390 NLVINYD-----FPTSSVEYIHRIGRTGRAGN 416


>gi|66812908|ref|XP_640633.1| DEAD-box RNA helicase [Dictyostelium discoideum AX4]
 gi|74997027|sp|Q54TF8|DDX19_DICDI RecName: Full=ATP-dependent RNA helicase ddx19; AltName:
           Full=ATP-dependent RNA helicase helC; AltName: Full=DEAD
           box protein 19
 gi|60468535|gb|EAL66538.1| DEAD-box RNA helicase [Dictyostelium discoideum AX4]
          Length = 465

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 92/217 (42%), Gaps = 28/217 (12%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
           F +   L E  F +   M N P +    N L P+ + V     ++ +       VE++I+
Sbjct: 208 FLKMVVLDEADFIVK--MKNVPNQIAMINRLLPSNVKVCLFSATFSMG------VEELIK 259

Query: 551 PTGLVDPPVEIRSARTQ--VEDVYDE-INLAAQQGLRILLT--------------VLTKR 593
              + DP   IR  R +  VE ++   I+  ++    ++L+              V T  
Sbjct: 260 KI-VQDPYTSIRLKRQELSVEKIHQYFIDCGSEDNKALILSDIYGFISVGQSIVFVHTIA 318

Query: 594 MAEDLTEYLYERNIRVRYMHS-EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
            A+ + + + +    V  ++  ++ T ER + I+D + GK  VL+  N+L  G+DIP+  
Sbjct: 319 TAKSVHQKMVDEGHSVSLLYGKDLTTEERFKQIKDFKDGKSKVLITTNVLARGIDIPQVS 378

Query: 653 LVAILDADKEGFLR-SKTSLIQTIGRAARNVNSKVIL 688
           LV   D   +   +      +  IGR  R   S V L
Sbjct: 379 LVINYDVPLDEMGKPDPVHYLHRIGRVGRFGRSGVAL 415


>gi|326923426|ref|XP_003207937.1| PREDICTED: nucleolar RNA helicase 2-like [Meleagris gallopavo]
          Length = 602

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 15/144 (10%)

Query: 523 PTTIVVSATPGSW-----------ELEQCQGIIVEQIIRPTGLVDP-PVEIRSARTQVED 570
           P T++ SAT   W           E EQ   +I ++  R    V+   ++ RS++ +VE 
Sbjct: 220 PQTLLFSATCPRWVYDVAKKYMKDEYEQVD-LIGKKTQRTATTVEHLAIQCRSSQ-RVEV 277

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D I + +    R ++   TK+ A +L      +    + +H ++   +R   ++  R 
Sbjct: 278 LGDIIQVYSGSHGRTIVFCETKKEANELALNSALKQ-EAQSLHGDIPQKQREITLKGFRN 336

Query: 631 GKFDVLVGINLLREGLDIPECGLV 654
           G F+VL+  N+   GLDIPE  LV
Sbjct: 337 GVFEVLIATNVAARGLDIPEVDLV 360


>gi|322384331|ref|ZP_08058029.1| PriA-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321150833|gb|EFX44270.1| PriA-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 828

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 152 DQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAA 207
           +Q  A AQ+ + +   R +V L+ GVTGSGKT    + I+      R AIV+ P   L  
Sbjct: 278 EQAEAFAQIHRSLTEGRHQVFLIHGVTGSGKTEVYLQSIQTCLEQGREAIVLVPEISLTP 337

Query: 208 QLYSEFKNFF 217
           QL   FK  F
Sbjct: 338 QLVERFKGRF 347


>gi|321265233|ref|XP_003197333.1| member of the DEAH family of helicases; Mph1p [Cryptococcus gattii
           WM276]
 gi|317463812|gb|ADV25546.1| Member of the DEAH family of helicases, putative; Mph1p
           [Cryptococcus gattii WM276]
          Length = 1517

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ + I + + G F++LV  ++  EGLDI E   V + D       R    L+Q IGR  
Sbjct: 705 EQKKTISEFKAGTFNILVSTSIGEEGLDIGEVDFVVLYD-----MPRQSIKLLQRIGRTG 759

Query: 680 R 680
           R
Sbjct: 760 R 760


>gi|323344223|ref|ZP_08084449.1| ATP-dependent helicase RecQ [Prevotella oralis ATCC 33269]
 gi|323094952|gb|EFZ37527.1| ATP-dependent helicase RecQ [Prevotella oralis ATCC 33269]
          Length = 635

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 8/135 (5%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L++ QG  I+  V +++ +++++E L +  I   + H+ ++  ++ E  +D +  +  V+
Sbjct: 224 LSSVQGSAIVY-VRSRKRSKEISEMLNKHQIPSTFYHAGLEYSQKDERQKDWQQDRIRVI 282

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTIT 694
           V  N    G+D PE  LV   D        S  +  Q  GRA R+ N    V+LY ++  
Sbjct: 283 VATNAFGMGIDKPEVRLVVHFDCPD-----SLEAYFQEAGRAGRDGNRSYAVLLYNNSDQ 337

Query: 695 KSIQLAIDETTRRRE 709
           + +   I +T   +E
Sbjct: 338 RKLHKRITDTFPEKE 352


>gi|255565079|ref|XP_002523532.1| Ribonuclease III, putative [Ricinus communis]
 gi|223537239|gb|EEF38871.1| Ribonuclease III, putative [Ricinus communis]
          Length = 1633

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 13/127 (10%)

Query: 612 MHSEVKTLERI---EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           +HS +K++ R     I+   + GK ++L+   +  EGLDI  C LV   D  +     + 
Sbjct: 449 VHSGLKSMSRKTMNSILEKFKTGKLNLLIATKVGEEGLDIQTCCLVVRFDLPE-----TV 503

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE---HNKKHNINPQSV 725
            S IQ+ GR AR   S+     D+  +  +L + E  RR E ++     ++  N    S+
Sbjct: 504 ASFIQSRGR-ARMPQSEYAFLVDSGNQK-ELDLIERFRRDEDRMNMEISSRTSNETFVSI 561

Query: 726 KEKIMEV 732
           +EK+ +V
Sbjct: 562 EEKVYKV 568


>gi|170291163|ref|YP_001737979.1| type III restriction protein res subunit [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170175243|gb|ACB08296.1| type III restriction protein res subunit [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 492

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 9/114 (7%)

Query: 597 DLTEYLYERNIRVRYMHSEV--KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           D  E +Y R +R RY    +  KT  R EI    + G+ +V+V   +L EG+D+P+  + 
Sbjct: 365 DQAEEIY-RELRKRYKVELMIGKTSGRSEIFERFKRGEINVIVTTRVLDEGIDVPDADVA 423

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-SIQLAIDETTRR 707
            I+         S+  + Q +GR  R    KV    + +T+ +I+  +    RR
Sbjct: 424 IIVSGSG-----SRRQMAQRVGRVVRGAPGKVADVYEIVTRGTIEEKLSRVRRR 472


>gi|154150356|ref|YP_001403974.1| Hef nuclease [Candidatus Methanoregula boonei 6A8]
 gi|153998908|gb|ABS55331.1| helicase domain protein [Methanoregula boonei 6A8]
          Length = 745

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 15/150 (10%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV-RYMHSEVKTLER-------IEIIRDLRLGKFDV 635
           RI++    +   + L +YL +  I   R++    K  E+       I  +   R G+F V
Sbjct: 374 RIIIFATFRDTVQLLVDYLTKNGISCERFVGQATKDAEKGLSQKRQIAALARFRAGEFKV 433

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++  EGLD+P   LV   +      + S+   IQ  GR  R+   +V++ A   T 
Sbjct: 434 LVATSVGEEGLDVPSTDLVIFYEP-----VPSEIRSIQRKGRTGRSGAGRVVVLATKGTS 488

Query: 696 -SIQLAIDETTRRR-EKQLEHNKKHNINPQ 723
             +   + +T  R+ +K L      +I  Q
Sbjct: 489 DDVYRYVSQTKERQMQKNLRQMSGQDITAQ 518


>gi|110681482|emb|CAL25351.1| dead-box helicase [Platanus x acerifolia]
          Length = 285

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 63/160 (39%), Gaps = 16/160 (10%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   +D+ EYL  + +    +H      ER   I   + GK DVLV  ++  +
Sbjct: 95  VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASK 154

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P+   V   D   E       + +  IGR  R   + +   A T     Q    ET
Sbjct: 155 GLDFPDIQHVINYDMPAE-----IENYVHRIGRTGRCGKTGI---ATTFINKNQ---SET 203

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
           T    K L    K  I P      + E+ DP+   DA T 
Sbjct: 204 TLLDLKHLLQEAKQRIPPV-----LAELNDPMEDMDAITN 238


>gi|119774467|ref|YP_927207.1| transcription-repair coupling factor [Shewanella amazonensis SB2B]
 gi|119766967|gb|ABL99537.1| transcription-repair coupling factor [Shewanella amazonensis SB2B]
          Length = 1155

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 22/175 (12%)

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
           ++ LK GD  + +++   LV   Y   +     G F + G  ++IFPS   +   R+ +F
Sbjct: 132 VLILKKGDRYQLQQMRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSGASE-PLRIELF 190

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
            +++E I  F P T +    V++I++     +    PT + A++  ++  + R  E    
Sbjct: 191 DDEVESIRHFDPETQRSSGEVDSIRMLPAREF----PTDSQAIEGFRQRYR-RTFETVNN 245

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
                A+ + Q ++ +L           IENY          +   TLF+Y+PE+
Sbjct: 246 A----AESVYQLVSRNL-------MPAGIENYLPLFF-----DDTATLFDYLPEE 284


>gi|332637374|ref|ZP_08416237.1| type III restriction protein res subunit [Weissella cibaria KACC
           11862]
          Length = 520

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 83/206 (40%), Gaps = 45/206 (21%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            E L + L  R I  R++  +    ER   + DL  G    +V +++  EG+DIP+   +
Sbjct: 20  GEALVKALATRGIAARFISGKNSVEERERAVADLEDGTLAYIVTVDVFNEGVDIPKVNQI 79

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYADTITKS--IQLAIDETTRRR 708
            ++         S    +Q +GR  R ++ K    +I +    + +  I +A D++   R
Sbjct: 80  VMMRP-----TVSSIIFLQQLGRGLRKIDGKEYVTIIDFIGNYSNNYMIPMAFDKS---R 131

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
               E  +K+ I+P                  A T   +I+ +Q++             R
Sbjct: 132 SSNKERIRKNIISP------------------AVTGVSTINFEQVA-------------R 160

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLK 794
           +Q+  A  +   + AAR +D    LK
Sbjct: 161 QQILRAVGDAKLDSAARFKDAYNTLK 186


>gi|325068259|ref|ZP_08126932.1| DEAD/DEAH box helicase domain protein [Actinomyces oris K20]
          Length = 507

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 19/162 (11%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L A+   R ++   TKR A  + + L  R      +H ++    R + +R  R  K DVL
Sbjct: 316 LQAEGRGRTIIFARTKRTAARVADDLRARGFATGALHGDLGQGAREQALRAFRNNKVDVL 375

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD---- 691
           V  ++   G+D+ +   V      ++     +   +  IGR  R  NS   + + D    
Sbjct: 376 VATDVAARGIDVDDVTHVINYQCPED-----EKIYVHRIGRTGRAGNSGTAVTFVDWDDV 430

Query: 692 ----TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
                I K++ L I+E       +  H  +H  +  S+ EK+
Sbjct: 431 PRWRIIAKALGLPIEEPV-----ETYHTSEHLFSDLSIPEKV 467


>gi|325270511|ref|ZP_08137111.1| transcription-repair coupling factor [Prevotella multiformis DSM
           16608]
 gi|324987087|gb|EGC19070.1| transcription-repair coupling factor [Prevotella multiformis DSM
           16608]
          Length = 1182

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 79/192 (41%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELE-QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     I+R       P++   A    E + D +N    +  
Sbjct: 764 TLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEIASFSHEVIADAVNFEMSRNG 823

Query: 584 RILLTVLTKRMAEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          +++ + +  Y  + RV   H ++K  E  E +       +DVL+   +
Sbjct: 824 QIYFVNDRISNLQEIADLIRKYVPDCRVAVGHGQMKPEELEETVMGFMNYDYDVLLSTTI 883

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I DA + G     + L Q  GR  R+ N K   Y   +      A+
Sbjct: 884 VENGIDIPNANTIIINDAHRFGL----SDLHQMRGRVGRS-NKKAFCY---LLAPPLAAL 935

Query: 702 DETTRRREKQLE 713
           +   RRR + LE
Sbjct: 936 NPEARRRLEALE 947


>gi|315658488|ref|ZP_07911360.1| DNA helicase RecG [Staphylococcus lugdunensis M23590]
 gi|315496817|gb|EFU85140.1| DNA helicase RecG [Staphylococcus lugdunensis M23590]
          Length = 681

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H ++ T ++ +++      + D+LV   ++  G+++P    + I DAD+ G    
Sbjct: 505 RVGLLHGKLSTEDKDDVMNQFSCHQIDILVSTTVVEVGVNVPNATFMMIYDADRFGL--- 561

Query: 668 KTSLIQTIGRAARN 681
            ++L Q  GR  R+
Sbjct: 562 -STLHQLRGRVGRS 574


>gi|311695148|gb|ADP98021.1| transcription-repair-coupling factor [marine bacterium HP15]
          Length = 1177

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AEDL   + E   RV   H +++  +  +I+ D    +F+VLV   ++  G+D+P  
Sbjct: 848 EKTAEDLRSLIPE--ARVGVAHGQMRERDLEKIMSDFYHKRFNVLVCTTIIETGIDVPSA 905

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 906 NTIIIERADKFGL----AQLHQLRGRVGRS 931


>gi|291434996|ref|ZP_06574386.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291337891|gb|EFE64847.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 497

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 6/112 (5%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +AA+ G R+LL + TK   + LT +L    +    +HS     +R   +   + G+  VL
Sbjct: 289 IAARDG-RVLLFLDTKHAVDQLTRHLRASGVHAGALHSGKSQPQRTRTLAQFKNGQLTVL 347

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  N+   GL + +  LV  +D   +         +   GR AR   S  ++
Sbjct: 348 VATNVAARGLHVDDLDLVVNVDPPTD-----PKDYVHRAGRTARAGESGSVV 394


>gi|223041453|ref|ZP_03611656.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor 202]
 gi|223017711|gb|EEF16118.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor 202]
          Length = 404

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK+  E++ +YL     RV  +  ++   +R+ ++     G+ D+LV  ++  
Sbjct: 255 RCMIFANTKQKCEEIWQYLLADGHRVGLLTGDIAQKKRLALLDSFTKGELDILVATDVAA 314

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            GL IPE   V   D   D+E +       +  IGR  R
Sbjct: 315 RGLHIPEVTHVFNYDLPDDREDY-------VHRIGRTGR 346


>gi|195473739|ref|XP_002089150.1| eIF-4a [Drosophila yakuba]
 gi|194175251|gb|EDW88862.1| eIF-4a [Drosophila yakuba]
          Length = 415

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++        ++   T+R  + LT+ +   N  V  MH +++  +R  I++  R
Sbjct: 274 DLYDTLSITQS-----VIFCNTRRKVDQLTQEMSLHNFTVSAMHGDMEQRDREVIMKQFR 328

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 329 SGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 366


>gi|184200491|ref|YP_001854698.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
 gi|183580721|dbj|BAG29192.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
          Length = 555

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 15/144 (10%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           ++V   I  A  +G  I+ T  TKR A  L + L  R      +H ++    R + +R  
Sbjct: 270 DEVVARILQAEGRGRSIIFT-RTKRAAAKLADELIHRGFAAAPLHGDLGQGAREQALRAF 328

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVI 687
           R  K DVLV  ++   G+D+ +   V      ++     KT L +T GR  R  N    I
Sbjct: 329 RNSKVDVLVATDVAARGIDVEDVTHVINFQCPED----EKTYLHRT-GRTGRAGNKGTAI 383

Query: 688 LYAD--------TITKSIQLAIDE 703
            + D         I K+++L I E
Sbjct: 384 TFVDWDDVPRWRLIDKALELGIPE 407


>gi|157692251|ref|YP_001486713.1| primosome assembly protein PriA [Bacillus pumilus SAFR-032]
 gi|157681009|gb|ABV62153.1| DNA replication factor Y [Bacillus pumilus SAFR-032]
          Length = 802

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 15/102 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+R+ E+LT+ L E     R +  +V T  R     +++      + D+L+G  ++ +GL
Sbjct: 562 TQRVEEELTKVLPE----ARVIRMDVDTTSRKGAHEKLLTSFSNKEADILLGTQMIAKGL 617

Query: 647 DIPECGLVAILDADKE----GFLRSKTS---LIQTIGRAARN 681
           D P+  LV +L AD       F  S+ +   L Q  GRA R+
Sbjct: 618 DFPDVTLVGVLSADTSLHIPDFRSSEKTFQLLTQVSGRAGRH 659


>gi|328874158|gb|EGG22524.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 850

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 11/90 (12%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE+L + L +     RY+   ++ +ER+ ++++L+  K  +LV  +L+  G+DI    LV
Sbjct: 387 AEELCKLLCKEGWPTRYIAGSMEQIERMAVMKELQAFKLRILVSTDLISRGIDIERVNLV 446

Query: 655 AILDA----DKEGFLRSKTSLIQTIGRAAR 680
             ++     D E +          IGR  R
Sbjct: 447 VNMEVPVAMDFETYF-------HRIGRTGR 469


>gi|311276168|ref|XP_003135076.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Sus
           scrofa]
          Length = 646

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 417 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 475

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N +
Sbjct: 476 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 532


>gi|308466625|ref|XP_003095565.1| CRE-DRH-3 protein [Caenorhabditis remanei]
 gi|308245160|gb|EFO89112.1| CRE-DRH-3 protein [Caenorhabditis remanei]
          Length = 979

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 24/126 (19%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV--KTL-----------------ERIEI 624
           R+++ V  +  A+ ++E+L E  I  +++++    KT+                 E+  +
Sbjct: 598 RVIIFVTQRNTAQRVSEFLNESGILEQFLNTTTRQKTVGYVLGTNNTGSVQQSPQEQQRV 657

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +     GK  V+V  +++ EGLD+  C L+   +        S   L+Q  GR AR  NS
Sbjct: 658 LEQFNSGKLKVIVATSVVEEGLDVTSCNLIIKYNCSSA----SAIQLVQRRGR-ARAKNS 712

Query: 685 KVILYA 690
           + +L A
Sbjct: 713 RSVLLA 718


>gi|293348216|ref|XP_001065440.2| PREDICTED: Kinesin-like protein at 3A-like [Rattus norvegicus]
          Length = 1380

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 62/144 (43%), Gaps = 15/144 (10%)

Query: 147 YHPSGDQP----AAIAQLLKGIHSREKVQLLL-GVTGSGKTFTMAKVIEAMQ--RPAIVM 199
           + PS +Q      A+A L+KGI       +L  G TGSGKT++M     A Q   P I +
Sbjct: 181 FDPSTEQEEVFNTAVAPLIKGIFKGYNATVLAYGQTGSGKTYSMGGAYRANQEDEPTIGV 240

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYF--VSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
            P  I   QL   FK        E+   VSY + Y  E  +    +  EK S I+ + D 
Sbjct: 241 IPRVI---QLL--FKEMEEKRDSEFTLRVSYLEIYN-EEILDLLCSSCEKASQIHIREDP 294

Query: 258 MRHSATRSLLERNDCIVVSSVSCI 281
                T  L E+   +    VSC+
Sbjct: 295 KAGIKTVGLTEKTVSVASDMVSCL 318


>gi|291222373|ref|XP_002731189.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 670

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+ V TK+  +DLT  +         +H +    ER  ++ + R G   +L+  ++  
Sbjct: 369 KTLIFVETKKRTDDLTRRMRRDGWPAMCIHGDKSQPERDWVLSEFRAGNAPILLATDVAS 428

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            GLD+ +   V   D     +  S    I  IGR AR+
Sbjct: 429 RGLDVTDIKFVINFD-----YPSSTEDYIHRIGRTARS 461


>gi|289550993|ref|YP_003471897.1| ATP-dependent DNA helicase RecG [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180525|gb|ADC87770.1| ATP-dependent DNA helicase RecG [Staphylococcus lugdunensis
           HKU09-01]
          Length = 681

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +H ++ T ++ +++      + D+LV   ++  G+++P    + I DAD+ G    
Sbjct: 505 RVGLLHGKLSTEDKDDVMNQFSCHQIDILVSTTVVEVGVNVPNATFMMIYDADRFGL--- 561

Query: 668 KTSLIQTIGRAARN 681
            ++L Q  GR  R+
Sbjct: 562 -STLHQLRGRVGRS 574


>gi|260598959|ref|YP_003211530.1| ATP-dependent RNA helicase SrmB [Cronobacter turicensis z3032]
 gi|260218136|emb|CBA32943.1| ATP-dependent RNA helicase srmB [Cronobacter turicensis z3032]
          Length = 444

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 5/100 (5%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +  R ++ V  +    +L   L +  I   Y+  E+  ++R E I+ L  G+ +VL+  +
Sbjct: 247 EATRSIVFVRKRERVHELANQLRQAGINNCYLEGEMVQVKRNEAIKRLTDGRVNVLIATD 306

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +   G+DIP+   V   D       R+  + +  IGR AR
Sbjct: 307 VAARGIDIPDVSHVINFD-----MPRTADTYLHRIGRTAR 341


>gi|227891791|ref|ZP_04009596.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227866356|gb|EEJ73777.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 499

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++    R+ ++R  + G  D+LV  ++   GLDI  
Sbjct: 256 TKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAARGLDI-- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 314 SGVTHVYNYD---IPQDPESYVHRIGRTGR 340


>gi|226940616|ref|YP_002795690.1| ATP-dependent RNA helicase protein [Laribacter hongkongensis HLHK9]
 gi|226715543|gb|ACO74681.1| Putative ATP-dependent RNA helicase protein [Laribacter
           hongkongensis HLHK9]
          Length = 520

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TKR  + L + L    IR   +H +++  +R   +  LR G+ +VLV  ++   G
Sbjct: 252 IVFVATKRDCDTLADELIVDGIRADALHGDMQQRDRTRTLTRLRSGQTEVLVATDVAARG 311

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +D+   G+  +++ D   F       +   GRA 
Sbjct: 312 IDV--AGISHVINFDLPRFAEDYVHRVGRTGRAG 343


>gi|203284487|ref|YP_002222227.1| DNA recombinase [Borrelia duttonii Ly]
 gi|203288021|ref|YP_002223036.1| DNA recombinase [Borrelia recurrentis A1]
 gi|201083930|gb|ACH93521.1| DNA recombinase [Borrelia duttonii Ly]
 gi|201085241|gb|ACH94815.1| DNA recombinase [Borrelia recurrentis A1]
          Length = 687

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 10/98 (10%)

Query: 605 RNIRVRY----MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           +NI V Y    +HS++++  + EI+ +  L K D+LV  +++  G+D P    + +  A+
Sbjct: 501 QNIFVEYSVAMIHSKLESYVKEEIMHNFYLKKIDILVATSVIEVGIDCPNATCMVVEHAE 560

Query: 661 KEGFLRSKTSLIQTIGRAAR-NVNS-KVILYADTITKS 696
           + G     ++L Q  GR  R N+ S   +LY + +T++
Sbjct: 561 RFGL----STLHQIRGRVGRSNLKSFFFLLYKEPLTEA 594


>gi|194397105|ref|YP_002036727.1| transcription-repair coupling factor [Streptococcus pneumoniae G54]
 gi|194356772|gb|ACF55220.1| transcription-repair coupling factor [Streptococcus pneumoniae G54]
          Length = 1169

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 87/197 (44%), Gaps = 15/197 (7%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  +++      A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEMSQLE-- 189

Query: 347 AWRVSMFGNDIEEISEF 363
             R+  FG++I+ I  F
Sbjct: 190 PCRIEFFGDEIDGIRSF 206



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|194290671|ref|YP_002006578.1| ATP-dependent DNA helicase recg [Cupriavidus taiwanensis LMG 19424]
 gi|193224506|emb|CAQ70517.1| ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG 19424]
          Length = 730

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++RV  +H  +   E+  ++ D    +  VLV   ++  G+D+P   L+ I  A++ G  
Sbjct: 554 DLRVGLVHGRLPPAEKAAVMDDFSANRLQVLVATTVIEVGVDVPNASLMVIEHAERFGL- 612

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
                L Q  GR  R     V L
Sbjct: 613 ---AQLHQLRGRVGRGSAESVCL 632


>gi|156375512|ref|XP_001630124.1| predicted protein [Nematostella vectensis]
 gi|156217139|gb|EDO38061.1| predicted protein [Nematostella vectensis]
          Length = 446

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 5/98 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+   TKR A++LT  L         +H +    ER  ++ + R G   +LV  ++  
Sbjct: 307 KTLIFTETKRRADELTRKLRSDGWPAMCIHGDKAQPERDWVLSEFRKGHAPILVATDVAS 366

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            GLDI +   V   D     F       +  IGR AR+
Sbjct: 367 RGLDISDIKFVINFD-----FPNCTEDYVHRIGRTARS 399


>gi|154249191|ref|YP_001410016.1| ATP-dependent DNA helicase RecQ [Fervidobacterium nodosum Rt17-B1]
 gi|154153127|gb|ABS60359.1| ATP-dependent DNA helicase, RecQ family [Fervidobacterium nodosum
           Rt17-B1]
          Length = 448

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE  + +L   NI   Y HSE+K+ +R  I ++    K+  +V  N L  G+D  +   +
Sbjct: 255 AEKYSRWLRFNNINAIYYHSEIKSKDRKTIEKEFFENKYKCVVATNALGMGIDKKDIRFI 314

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQ-LAIDETTRRREK 710
              +     F  S     Q IGRA R N  S +IL  D     IQ   ID++   R K
Sbjct: 315 IHTE-----FPGSLIHYYQEIGRAGRDNKPSDIILLYDEKDIEIQEYFIDQSKPERYK 367


>gi|50312211|ref|XP_456137.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660243|sp|Q6CIV2|DBP2_KLULA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49645273|emb|CAG98845.1| KLLA0F23716p [Kluyveromyces lactis]
          Length = 554

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 2/99 (2%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           Q  +I++   TKR  +++T YL         +H +    ER  ++ + R G+  ++V  +
Sbjct: 359 QDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATD 418

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +   G+D+   G+  +++ D  G +      I   GRA 
Sbjct: 419 VAARGIDVK--GINYVINYDMPGNIEDYVHRIGRTGRAG 455


>gi|19113945|ref|NP_593033.1| ATP-dependent RNA helicase Rok1 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|1175447|sp|Q09775|ROK1_SCHPO RecName: Full=ATP-dependent RNA helicase rok1
 gi|1008436|emb|CAA91073.1| ATP-dependent RNA helicase Rok1 (predicted) [Schizosaccharomyces
           pombe]
          Length = 481

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           TE L++  I V  +H E+   +R E +   R G+  VL+  +LL  G+D     +V   D
Sbjct: 306 TELLFD-EIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFD 364

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNS 684
                F +S  S I  IGR  R  N+
Sbjct: 365 -----FPQSVHSYIHRIGRTGRAGNT 385


>gi|152974577|ref|YP_001374094.1| type III restriction protein res subunit [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023329|gb|ABS21099.1| type III restriction protein res subunit [Bacillus cytotoxicus NVH
           391-98]
          Length = 812

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 11/100 (11%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   + R A  L+ Y  +       +HSE K + R + I+ L     D +  ++L  
Sbjct: 449 RTIVFCSSIRQAVFLSTYFNQNGYNTISLHSETKDISREDAIKRLDRNTLDAIFTVDLFN 508

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSL---IQTIGRAAR 680
           EG+DIP          D   F+R   SL    Q IGR  R
Sbjct: 509 EGVDIP--------SVDTLLFVRPTESLTIFTQQIGRGLR 540


>gi|121602903|ref|YP_989053.1| ATP-dependent DNA helicase RecG [Bartonella bacilliformis KC583]
 gi|120615080|gb|ABM45681.1| ATP-dependent DNA helicase RecG [Bartonella bacilliformis KC583]
          Length = 702

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H ++ T E+   +   + GK  +LV   ++  G+DIP+  ++ I  A+  G     
Sbjct: 520 VGMIHGKMSTNEKDAAMASFKCGKTRILVATTVIEVGVDIPDASIIVIEHAEHFGL---- 575

Query: 669 TSLIQTIGRAARN--VNSKVILYADTITKS 696
           + L Q  GR  R    +S ++LY   +TK+
Sbjct: 576 SQLHQLRGRVGRGEKKSSCILLYKGPLTKT 605


>gi|117925891|ref|YP_866508.1| type III restriction enzyme, res subunit [Magnetococcus sp. MC-1]
 gi|117609647|gb|ABK45102.1| type III restriction enzyme, res subunit [Magnetococcus sp. MC-1]
          Length = 560

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A ++T+     ++    +H E+ + ER   +     G   V+V + +L EG D P    V
Sbjct: 248 ARNVTDAFNAADVEAVMVHGELSSAERKATLSRFEKGSAMVVVNVAVLTEGYDHPPASCV 307

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +L          K+++IQ +GR  R V+
Sbjct: 308 VLLRPSS-----FKSTMIQMVGRGLRTVD 331


>gi|325126064|gb|ADY85394.1| Primosomal replication factor [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 793

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 15/106 (14%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINL 641
            L   T+++ E+L E   +  I    +  +V T  R     +I+     G+ D+L+G  +
Sbjct: 549 FLGTGTQKVQEELAELFPQAKI----LRMDVDTTRRKGSYDKILTSFGQGEADILLGTQM 604

Query: 642 LREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           + +GLD P   LV +++AD   +L       R+   + Q  GRA R
Sbjct: 605 IAKGLDFPNVTLVGVINADTGLWLPDYNASERTFELITQVAGRAGR 650


>gi|307718497|ref|YP_003874029.1| ATP-dependent DNA helicase RecG [Spirochaeta thermophila DSM 6192]
 gi|306532222|gb|ADN01756.1| ATP-dependent DNA helicase RecG [Spirochaeta thermophila DSM 6192]
          Length = 683

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 6/91 (6%)

Query: 593 RMAEDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           R AE + E+L  R  R  V  +HS +   E+  I+R+   G   +LV  +++  G+++P 
Sbjct: 488 RNAESMVEFLRRRYPRWKVALIHSRIPDEEKERIMREFMQGTIRILVATSVIEVGVNVPT 547

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
              + I  A++ G      +L Q  GR  R+
Sbjct: 548 ATCIVIEHAERFGL----ATLHQLRGRVGRS 574


>gi|306835508|ref|ZP_07468523.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
           49726]
 gi|304568617|gb|EFM44167.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
           49726]
          Length = 446

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 38/75 (50%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L AQ   R ++   TKR A  L + L ER   V  +H ++    R + ++  R G+ D+L
Sbjct: 251 LQAQGRGRSIIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKSLQAFRSGEVDIL 310

Query: 637 VGINLLREGLDIPEC 651
           V  ++   G+D+ + 
Sbjct: 311 VATDIAARGIDVDDV 325


>gi|293390239|ref|ZP_06634573.1| excinuclease ABC, C subunit [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290950773|gb|EFE00892.1| excinuclease ABC, C subunit [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 609

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 4/50 (8%)

Query: 750 AQQLSLSK----KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AQQ++ ++     K +  L  L KQM  A+  LNFEEAARIRD+I+ +++
Sbjct: 187 AQQVNFARLFLQGKDQQVLDHLVKQMEQASQQLNFEEAARIRDQIQAVRA 236


>gi|288958061|ref|YP_003448402.1| transcription-repair coupling factor superfamily II helicase
           [Azospirillum sp. B510]
 gi|288910369|dbj|BAI71858.1| transcription-repair coupling factor superfamily II helicase
           [Azospirillum sp. B510]
          Length = 1171

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 17/176 (9%)

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVP--RTDTYIEKESSIN 252
           MA +    A L      F P   V  F ++    YD   P   +   R DT       + 
Sbjct: 1   MALDDTRCALLAEALAFFAPKLEVLTFPAWDCLPYDRVSPNGGIVARRIDT-------LT 53

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSS 311
             I R   ++ R  L     IV+++V+ +   +    ++   +   K+ D ++ ++L   
Sbjct: 54  RLIARREAASNRDGLA--PLIVLTTVNAVVQKVPPRSAFKDAVFSAKLRDRIDLEKLQRY 111

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           L    Y R       G F V G  +++FP   E+   R+ +FG+++E +  F P+T
Sbjct: 112 LAGNGYTRAQTVREPGEFAVRGGIVDLFPPGSEE-PLRLDLFGDELEGVRAFDPMT 166



 Score = 37.4 bits (85), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           ++AE + E + E  +++   H ++   E  +++     GKF+VL+  N++  GLDIP   
Sbjct: 802 KVAERVRELVPE--VKIVTAHGQMAASELEDVMTAFDEGKFEVLLATNIIESGLDIPNAN 859

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + +  AD  G       L Q  GR  R+
Sbjct: 860 TLIVHRADLFGL----AQLYQIRGRVGRS 884


>gi|240949168|ref|ZP_04753515.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor NM305]
 gi|240296471|gb|EER47107.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor NM305]
          Length = 404

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK+  E++ +YL     RV  +  ++   +R+ ++     G+ D+LV  ++  
Sbjct: 255 RCMIFANTKQKCEEIWQYLLADGHRVGLLTGDIAQKKRLALLDSFTKGELDILVATDVAA 314

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            GL IPE   V   D   D+E +       +  IGR  R
Sbjct: 315 RGLHIPEVTHVFNYDLPDDREDY-------VHRIGRTGR 346


>gi|225024865|ref|ZP_03714057.1| hypothetical protein EIKCOROL_01753 [Eikenella corrodens ATCC
           23834]
 gi|224942394|gb|EEG23603.1| hypothetical protein EIKCOROL_01753 [Eikenella corrodens ATCC
           23834]
          Length = 1271

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 48/252 (19%), Positives = 101/252 (40%), Gaps = 21/252 (8%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+ P+   A +L + ++ F P +    F+  ++    E + P  D   E+ S + +   
Sbjct: 37  LVLTPDAETALRLQTAWQFFRPQDNA-LFLPDWETLPYERFSPHQDLVSERLSVLWQ--- 92

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            +++ A        D +     + +  +            LK G +++  +L  +LV+  
Sbjct: 93  -LKNGAA-------DVLFAPVSTAMQRLAPPSFLMGRTFWLKTGQTLDLDKLRENLVEAG 144

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y      +  G F V G  +++FP       +R+ +F ++I+ I  F P T + +  V  
Sbjct: 145 YSAVSNVVAGGEFAVRGGIVDLFPIG-SSTPYRIDLFDDEIDSIKTFDPDTQRTLAPVSE 203

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA---QRLEQRITYDLEML 433
           I++     +    PT   A K  +   +  +     E  + +A    +    + Y L + 
Sbjct: 204 IRLLPAHEF----PTDADAQKIFRTRFREEIQSNPNEAAVYQAVSNGQFGAGVEYYLPLF 259

Query: 434 ETTGSCQSIENY 445
              G C S+ +Y
Sbjct: 260 FEDG-CASLFDY 270



 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G    
Sbjct: 962  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGL--- 1018

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 1019 -AQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1054


>gi|213161891|ref|ZP_03347601.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 346

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L      R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +VL
Sbjct: 145 LKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVL 204

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR  R
Sbjct: 205 VATDVAARGIDIPDVSHVINFD-----MPRSGDTYLHRIGRTGR 243


>gi|145640383|ref|ZP_01795967.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|145274969|gb|EDK14831.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.4-21]
          Length = 402

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++  
Sbjct: 250 RGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D        S  + +  IGR AR
Sbjct: 310 RGIDIDDVSHVMNFD-----LPYSADTYLHRIGRTAR 341


>gi|113869065|ref|YP_727554.1| ATP-dependent DNA helicase RecG [Ralstonia eutropha H16]
 gi|113527841|emb|CAJ94186.1| ATP-dependent DNA helicase [Ralstonia eutropha H16]
          Length = 729

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++RV  +H  +   E+  ++ D    +  VLV   ++  G+D+P   L+ I  A++ G  
Sbjct: 553 DLRVGLVHGRLPPAEKAAVMDDFSANRMQVLVATTVIEVGVDVPNASLMVIEHAERFGL- 611

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
                L Q  GR  R     V L
Sbjct: 612 ---AQLHQLRGRVGRGSAESVCL 631


>gi|72391252|ref|XP_845920.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62175291|gb|AAX69436.1| hypothetical protein Tb927.7.2970 [Trypanosoma brucei]
 gi|70802456|gb|AAZ12361.1| hypothetical protein Tb927.7.2970 [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 824

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 23/113 (20%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN- 681
           ++I + R G   +LV  +L  EGLDI +C LV   D+       S  S +Q+ GRA R  
Sbjct: 472 DVIDEFRKGNTRLLVATSLAEEGLDIAQCNLVIRYDS-----CVSLRSFVQSRGRARRRN 526

Query: 682 -----------------VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
                            V  K +   D +  +++ AI+  TRR  +  E + K
Sbjct: 527 ALFIVFEHARREIKVAAVAMKAVRLQDFLVNAVRDAIEVGTRRAPRVWEESPK 579


>gi|116514365|ref|YP_813271.1| primosomal protein N' [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|116093680|gb|ABJ58833.1| replication restart DNA helicase PriA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 793

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 15/106 (14%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINL 641
            L   T+++ E+L E   +  I    +  +V T  R     +I+     G+ D+L+G  +
Sbjct: 549 FLGTGTQKVQEELAELFPQAKI----LRMDVDTTRRKGSYDKILTSFGQGEADILLGTQM 604

Query: 642 LREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           + +GLD P   LV +++AD   +L       R+   + Q  GRA R
Sbjct: 605 IAKGLDFPNVTLVGVINADTGLWLPDYNASERTFELITQVAGRAGR 650


>gi|331696881|ref|YP_004333120.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951570|gb|AEA25267.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 659

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+   + +TE L  R +R   +H  +    R  ++  LR G+ D+LV  ++   GLDI +
Sbjct: 345 TRADVDAVTEALTGRGLRAEALHGGMDQEHRTRVVDRLRNGRTDLLVATDVAARGLDIDQ 404

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D  K     S  S +  IGR  R     V +
Sbjct: 405 LTHVVNHDVPK-----SPESYVHRIGRVGRAGREGVAI 437


>gi|326470936|gb|EGD94945.1| ATP-dependent RNA helicase DBP8 [Trichophyton tonsurans CBS 112818]
 gi|326478499|gb|EGE02509.1| ATP-dependent RNA helicase DBP8 [Trichophyton equinum CBS 127.97]
          Length = 528

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 597 DLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           DL E +  R + RV  +HS +   ERI  +   R     +LV  ++   GLDIP  GLV 
Sbjct: 367 DLLERILRRLSHRVTSLHSLLPQSERIANLSRFRASAARLLVATDVAARGLDIPSVGLVI 426

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR 680
             D       R+    I  +GR AR
Sbjct: 427 NYDVP-----RNPDDYIHRVGRTAR 446


>gi|149013378|ref|ZP_01834087.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP19-BS75]
 gi|182682976|ref|YP_001834723.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CGSP14]
 gi|303254907|ref|ZP_07340992.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS455]
 gi|303259732|ref|ZP_07345708.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP-BS293]
 gi|303262199|ref|ZP_07348144.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265395|ref|ZP_07351302.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS397]
 gi|303266057|ref|ZP_07351951.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS457]
 gi|303268465|ref|ZP_07354259.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS458]
 gi|147762901|gb|EDK69849.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP19-BS75]
 gi|182628310|gb|ACB89258.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CGSP14]
 gi|301800979|emb|CBW33640.1| putative putative transcription-repair coupling factor
           [Streptococcus pneumoniae INV200]
 gi|302598178|gb|EFL65239.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS455]
 gi|302636839|gb|EFL67329.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639284|gb|EFL69743.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP-BS293]
 gi|302641966|gb|EFL72319.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS458]
 gi|302644361|gb|EFL74614.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS457]
 gi|302645072|gb|EFL75312.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS397]
          Length = 1169

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 87/197 (44%), Gaps = 15/197 (7%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  +++      A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+  +Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEMSQLE-- 189

Query: 347 AWRVSMFGNDIEEISEF 363
             R+  FG++I+ I  F
Sbjct: 190 PCRIEFFGDEIDGIRSF 206



 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|76819760|ref|YP_335463.1| DEAD-box ATP dependent DNA helicase [Burkholderia pseudomallei
           1710b]
 gi|76584233|gb|ABA53707.1| ATP-dependent helicase, DEAD/DEAH family [Burkholderia pseudomallei
           1710b]
          Length = 1700

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIR 626
           E +YD I   A      L+ V T+RMAE    +L +R     +   H  +    R +  +
Sbjct: 372 ERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAHHGSLAKEHRFDAEQ 431

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            L+ GK  +LV    L  G+DI +  LV  L     G  R     +Q +GR+  ++  
Sbjct: 432 RLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFLQRVGRSGHHIGG 484


>gi|145489315|ref|XP_001430660.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74830695|emb|CAI39097.1| Dicer-like ribonuclease with mutated helicase and Rnase III domains
           [Paramecium tetraurelia]
 gi|124397759|emb|CAK63262.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1596

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 10/69 (14%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF--LRSKTSLIQTIGRAAR 680
           +II   R GK  +L+  ++  EG+DIP C  V        GF  + S  + +Q  GR AR
Sbjct: 614 DIINKFRQGKIKILISTSVAEEGIDIPMCNYVI-------GFNPISSSKAYVQMKGR-AR 665

Query: 681 NVNSKVILY 689
             NS+ +++
Sbjct: 666 KENSQFMIF 674


>gi|330926544|ref|XP_003301506.1| hypothetical protein PTT_13026 [Pyrenophora teres f. teres 0-1]
 gi|311323638|gb|EFQ90408.1| hypothetical protein PTT_13026 [Pyrenophora teres f. teres 0-1]
          Length = 514

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 598 LTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           L EY+    + RV  +HS +K  +R+  +   R     +LV  ++   GLDIPE  LV  
Sbjct: 353 LLEYMLRLLDHRVTALHSGLKQTDRVSNLARFRAQAARILVATDVAARGLDIPEVALVIN 412

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR 680
            D       R     I  +GR AR
Sbjct: 413 FDVP-----RDPDDYIHRVGRTAR 431


>gi|307294144|ref|ZP_07573988.1| primosomal protein N' [Sphingobium chlorophenolicum L-1]
 gi|306880295|gb|EFN11512.1| primosomal protein N' [Sphingobium chlorophenolicum L-1]
          Length = 728

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 10/110 (9%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD---KEGFLRSK----TSLIQTI 675
           E ++ +  G  D+++G  L+ +G   P   LV ++DAD   + G LR+       ++Q  
Sbjct: 525 EFVKSVEAGAVDIIIGTQLVTKGYHFPNLTLVGVIDADLGLEGGDLRASERTFQQIVQVA 584

Query: 676 GRAARNVNSKVILYADTITKS---IQLAIDETTRRREKQLEHNKKHNINP 722
           GRA R      +     + ++     L   ++ R  E + E+ ++ N  P
Sbjct: 585 GRAGRGQKPGRVFIQTRMPEAEVIKALIAGDSERFYEVETENRRRANAPP 634


>gi|258624900|ref|ZP_05719828.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|258582898|gb|EEW07719.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
          Length = 451

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVYDE---------INLAAQQGLR-ILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y           + L  +   + +L+ + TK  A 
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQVLVFMRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L  YL E+ +    +H       R   + D + G+  +LV  ++   G+DIP+
Sbjct: 258 RLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQ 311


>gi|224108776|ref|XP_002333344.1| predicted protein [Populus trichocarpa]
 gi|222836269|gb|EEE74690.1| predicted protein [Populus trichocarpa]
          Length = 121

 Score = 38.9 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 27/47 (57%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           +H ++  L R  I++  + G+  VLV   L   GLD+PEC LV  LD
Sbjct: 6   LHGDLGKLGRSPILKKFKSGQVRVLVTNELAARGLDVPECDLVVNLD 52


>gi|78188440|ref|YP_378778.1| hypothetical protein Cag_0462 [Chlorobium chlorochromatii CaD3]
 gi|78170639|gb|ABB27735.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
          Length = 202

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           AA  +    A    L  ++ KA LK L+  +  A +N  +EEAAR+RDEI RLK
Sbjct: 148 AAVLSSPTSATAQHLRAEQRKATLKELQAHLEEAINNEAYEEAARLRDEIARLK 201


>gi|15894071|ref|NP_347420.1| ATP-dependent RNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15023670|gb|AAK78760.1|AE007593_8 ATP-dependent RNA helicase, superfamily II [Clostridium
           acetobutylicum ATCC 824]
 gi|325508198|gb|ADZ19834.1| ATP-dependent RNA helicase, superfamily II [Clostridium
           acetobutylicum EA 2018]
          Length = 374

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L   LY R    + +HS++   +R  I++  R G F  L+  ++   GLDI  
Sbjct: 248 TKRRVDELEVELYRRGFDCQKLHSDLTQTKRERIMKSFRNGDFQYLLATDVASRGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  I + D      +  S I  IGR  R
Sbjct: 306 SGVSHIYNYDVPD---NPESYIHRIGRTGR 332


>gi|260463947|ref|ZP_05812143.1| ATP-dependent DNA helicase RecG [Mesorhizobium opportunistum
           WSM2075]
 gi|259030322|gb|EEW31602.1| ATP-dependent DNA helicase RecG [Mesorhizobium opportunistum
           WSM2075]
          Length = 702

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 14/103 (13%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+  +H  +K  E+ E +R  + G+  +L+   ++  G+D+P+  ++ I  A++ G    
Sbjct: 519 RIGLVHGRMKGAEKDEAMRAFKQGETRILIATTVIEVGVDVPDATVMVIEHAERFGL--- 575

Query: 668 KTSLIQTIGRAARN--VNSKVILYADTITKSIQLAIDETTRRR 708
              L Q  GR  R    +S V+LY D         + ET +RR
Sbjct: 576 -AQLHQLRGRVGRGDKPSSCVLLYKDP--------LGETAKRR 609


>gi|251792698|ref|YP_003007424.1| excinuclease ABC subunit C [Aggregatibacter aphrophilus NJ8700]
 gi|247534091|gb|ACS97337.1| excinuclease ABC, C subunit [Aggregatibacter aphrophilus NJ8700]
          Length = 612

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 4/50 (8%)

Query: 750 AQQLSLSK----KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AQQ++ ++     K +  L  L KQM  A+  LNFEEAARIRD+I+ +++
Sbjct: 190 AQQVNFARLFLQGKDQQVLDHLVKQMEQASQQLNFEEAARIRDQIQAVRA 239


>gi|253698821|ref|YP_003020010.1| primosomal protein N' [Geobacter sp. M21]
 gi|251773671|gb|ACT16252.1| primosomal protein N' [Geobacter sp. M21]
          Length = 752

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 33/195 (16%)

Query: 604 ERNIRVRYMHSEVKTLER---------IEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           E  ++  + H+ V  ++R           ++++L  G+ D+L+G  ++ +G D P   LV
Sbjct: 516 EEQVQQLFPHARVSRMDRDTTRGKGGHARVLKELEEGEVDILIGTQMIAKGHDFPGVTLV 575

Query: 655 AILDADKEGFL-------RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
            +L AD    L       R+   + Q +GRA R      +L              +T   
Sbjct: 576 GVLSADASLNLPDFRSAERTFQLVTQVMGRAGRGDKPGRVLV-------------QTLAP 622

Query: 708 REKQLEHNKKHNINPQSVKEKIM---EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
               L H   H+      +E+I    EV  P     A+ T  ++ A Q   S  +  A L
Sbjct: 623 EHYALTHAVSHDFQ-GFYREEIAFREEVGYPPFAHLASLTISAVAASQGEHSADEAAALL 681

Query: 765 KSLRKQMHLAADNLN 779
           + ++++  L  + L 
Sbjct: 682 QKIKRECRLRVEVLG 696


>gi|161899219|ref|XP_001712836.1| translation initiation factor 4A2 [Bigelowiella natans]
 gi|75756329|gb|ABA27224.1| translation initiation factor 4A2 [Bigelowiella natans]
          Length = 378

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   T R A  +   L   N  V  +H  V   ER  I ++ R GK   LV  ++  
Sbjct: 251 QVLIFCNTIRKANWIHNKLLANNFNVGLIHGRVIQKERTNIFKNFRDGKTRALVTTDVSS 310

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GL+IPE  LV  ++ D   F   K   +  IGR  R
Sbjct: 311 RGLNIPEVSLV--INYDIPTF---KDVYLHRIGRTGR 342


>gi|316971061|gb|EFV54899.1| conserved hypothetical protein [Trichinella spiralis]
          Length = 700

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 25/134 (18%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN----IRVRYM----------HSEV 616
           V ++ NL +    R+L+ V TK++A  L + + + +      V ++           S+V
Sbjct: 384 VLNQFNLDSDS--RVLIFVRTKKLAAQLCQCIKDDSDVDIYGVNFITSCSSGATDPGSKV 441

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
             + R++  ++   G+F +L+  +LL EG+D+  C LV      +  ++ S  S IQ  G
Sbjct: 442 IVVNRLQQFKE---GEFKILIATSLLEEGIDVAACNLVI-----RYNYVTSVISKIQQRG 493

Query: 677 RAARNVNSKVILYA 690
           R  R  N  V+L A
Sbjct: 494 R-TRKGNGAVVLIA 506


>gi|307201507|gb|EFN81270.1| Probable ATP-dependent RNA helicase DDX23 [Harpegnathos saltator]
          Length = 679

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 91/209 (43%), Gaps = 40/209 (19%)

Query: 38  DKTMVADAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSSISMS------EKQT 91
           ++  +A   R+   EA + ++   ++ L H  +N + + E+  +  + +       EKQ 
Sbjct: 153 ERAALALEKRQKEVEAIRKQQEEERKSLFHN-DNISKEREWDDRDRMRLKKVKRKEEKQK 211

Query: 92  ---REISEQTMTPSVQALARLIQSD-NPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDY 147
              R  SE+ +    +   R+ + D N  +K G+I  P RSW  +   K+I     +  Y
Sbjct: 212 WDDRHWSEKALNEMTERDWRIFREDYNITIKGGRIPDPIRSWKESGFPKEILDIIDKVGY 271

Query: 148 H---PSGDQPAAIAQLLKGIHSREKVQLLLGV--TGSGKTFT--------------MAKV 188
               P   Q   I     G+ +R+    ++GV  TGSGKT                + ++
Sbjct: 272 KDLTPIQRQAIPI-----GLQNRD----IIGVAETGSGKTLAFLIPLLLWITSLPKIERL 322

Query: 189 IEAMQRP-AIVMAPNKILAAQLYSEFKNF 216
            EA Q P +I++AP + LA Q+  E   F
Sbjct: 323 EEADQGPYSIILAPTRELAQQIEEETNKF 351


>gi|291569965|dbj|BAI92237.1| transcriptional-repair coupling factor [Arthrospira platensis
           NIES-39]
          Length = 1167

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 65/144 (45%), Gaps = 8/144 (5%)

Query: 248 ESSINEQIDRMRHSATRSLLERND------CIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           E S +E++   +      L+ RN        +V +  S    +  V  +    + LK+G 
Sbjct: 91  EPSYSEEMVWGQMQVLADLVTRNGGKADRVAVVATERSLQPHLPPVSDFQSYCLPLKLGM 150

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
           +   K +   L +  Y+R  +    G +   GD +++FP   E +  R+  FG+++E + 
Sbjct: 151 TCAGKTIDQKLAQLGYQRVTVVETEGQWSRRGDIVDVFPVASE-LPVRLEWFGDELERMR 209

Query: 362 EFYPLTGQKIRNVETIKIYANSHY 385
           E  P+T + +  V+ + I   +H+
Sbjct: 210 ELDPVTQRSLDRVDQL-ILTPTHF 232


>gi|295836129|ref|ZP_06823062.1| ATP-dependent DNA helicase RecQ [Streptomyces sp. SPB74]
 gi|295825878|gb|EDY42157.2| ATP-dependent DNA helicase RecQ [Streptomyces sp. SPB74]
          Length = 721

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++  LT   A+++  YL +R   V       +  +R+E  + L   +   LV  + L  G
Sbjct: 255 IIYTLTVATADEVAAYLRQRGHEVTAYTGRTENADRLEAEQALLANRVKALVATSALGMG 314

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            D P+ G V  L A       S  +  Q +GRA R V    +L
Sbjct: 315 FDKPDLGFVVHLGAPS-----SPIAYYQQVGRAGRGVEHAEVL 352


>gi|147861063|emb|CAN78736.1| hypothetical protein VITISV_003102 [Vitis vinifera]
 gi|297743544|emb|CBI36411.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 63/159 (39%), Gaps = 16/159 (10%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   +D+ EYL  + +    +H      ER   I   + GK DVLV  ++  +
Sbjct: 396 VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASK 455

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P+   V   D   E       + +  IGR  R   + +   A T     Q    ET
Sbjct: 456 GLDFPDIKHVINYDMPAE-----IENYVHRIGRTGRCGKTGI---ATTFINKNQ---SET 504

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743
           T    K L    K  I P      + E+ DP+   DA T
Sbjct: 505 TLLDLKHLLQEAKQRIPPV-----LAELNDPMEDVDAIT 538


>gi|114327500|ref|YP_744657.1| transcription-repair coupling factor [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315674|gb|ABI61734.1| transcription-repair coupling factor [Granulibacter bethesdensis
           CGDNIH1]
          Length = 1149

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +GD  +  E+   L +  Y R    +  G + + G  ++IFPS  E    R+ +FG
Sbjct: 116 LDLGVGDLADPDEMARFLDQHGYVRAGTVMEAGEYALRGGIVDIFPSG-EAEPIRLDLFG 174

Query: 355 NDIEEISEFYPLTGQKIRNVETI 377
           + IE I  F P T +    VE +
Sbjct: 175 DQIESIRRFDPTTQRSGEAVERL 197



 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RMAE L E + E   ++   H ++   E   ++ +   GK D+L+  N++  GLD+P   
Sbjct: 817 RMAERLAEIVPE--AKLITAHGQLAPTELERVMTEFGDGKHDILLATNIVESGLDMPAVN 874

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD  G       L Q  GR  R 
Sbjct: 875 TIIIHRADMFGL----GQLYQLRGRVGRG 899


>gi|307547000|ref|YP_003899479.1| ATP-dependent DNA helicase RecG [Halomonas elongata DSM 2581]
 gi|307219024|emb|CBV44294.1| ATP-dependent DNA helicase RecG [Halomonas elongata DSM 2581]
          Length = 693

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++L E L   NI +  +H  +K  E+ E++   + G+ D+LV   ++  G+D+P   L+ 
Sbjct: 508 DELVEALPGLNIGL--VHGRMKASEKAEVMEAFKEGELDLLVATTVIEVGVDVPNASLMI 565

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           I + ++ G     + L Q  GR  R       L
Sbjct: 566 IENPERLGL----SQLHQLRGRVGRGSTESYCL 594


>gi|326789718|ref|YP_004307539.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326540482|gb|ADZ82341.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 592

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +DL   L  R      +H ++K L+R  ++   R G  D+L+  ++   G+D+ +
Sbjct: 254 TKRRVDDLCRDLQARGYSAESLHGDMKQLQRDNVMSRFRNGLIDILIATDVAARGIDVDD 313

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
              V   D  +D+E +       +  IGR  R
Sbjct: 314 VDAVFNYDVPSDEEYY-------VHRIGRTGR 338


>gi|269215473|ref|ZP_06159327.1| ATP-dependent DNA helicase RecG [Slackia exigua ATCC 700122]
 gi|269130960|gb|EEZ62035.1| ATP-dependent DNA helicase RecG [Slackia exigua ATCC 700122]
          Length = 723

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           +  RV  +H ++K  E+ E +   R G  DVLV   ++  G+D+P    + + DA++ G 
Sbjct: 538 KEFRVGLLHGKMKPAEKEEAMARFREGGIDVLVATTVVEVGVDVPNATCMVVEDAERFGL 597


>gi|254555653|ref|YP_003062070.1| Helicase-like protein:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase-like protein
           [Lactobacillus plantarum JDM1]
 gi|254044580|gb|ACT61373.1| Helicase-like protein:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase-like protein
           [Lactobacillus plantarum JDM1]
          Length = 419

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 28/63 (44%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE L E   +  I  R +  +     R  I+ D R GK  V+    L  EGLD+P    V
Sbjct: 189 AERLAEAFNQAGITARAVSGKTDRAARKRIVADYRAGKIQVVTNAELFTEGLDLPNVDCV 248

Query: 655 AIL 657
            +L
Sbjct: 249 IML 251


>gi|168068661|ref|XP_001786160.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662029|gb|EDQ49028.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 377

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 586 LLTVLTKRMA--EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           L  V  +R A  +++T+ L E+ ++   +H      ER   +RD R G  ++LV  ++  
Sbjct: 185 LTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALRDFRKGTTNILVATDVAS 244

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+   G+  +++ D     ++    +  IGR  R
Sbjct: 245 RGLDV--TGVAHVINLD---LPKTMEDYVHRIGRTGR 276


>gi|158335611|ref|YP_001516783.1| type III restriction enzyme, res subunit [Acaryochloris marina
           MBIC11017]
 gi|158305852|gb|ABW27469.1| type III restriction enzyme, res subunit [Acaryochloris marina
           MBIC11017]
          Length = 490

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 17/145 (11%)

Query: 575 INLAAQQGLRILLTVLTKRMAE--------DLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           I    +  LRIL  +L +   E        + T Y   ++  +  +  +    ER +I++
Sbjct: 315 IAFGTEGKLRILADLLAQHHPEQTLIFTDDNATVYRISQDFLIPAITHKTPVKERHDILQ 374

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN--S 684
             R G +  LV   +L EG+D+PE  +  +L         S    +Q +GR  R      
Sbjct: 375 RFRSGDYPTLVASRVLNEGVDVPEASIAIVLSGTG-----STREYVQRLGRVLRKGKDPD 429

Query: 685 KVILYADTITKSIQLAIDETTRRRE 709
           K+ L  + I ++   + + T RRR+
Sbjct: 430 KLALLYEVIAENT--SEENTARRRQ 452


>gi|157823027|ref|NP_001101716.1| ATP-dependent RNA helicase DDX3X [Rattus norvegicus]
 gi|149044331|gb|EDL97652.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Rattus
           norvegicus]
          Length = 311

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 82  DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 140

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 141 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 199

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 200 ---NITKDL 205


>gi|37680384|ref|NP_934993.1| DNA or RNA helicase [Vibrio vulnificus YJ016]
 gi|37199131|dbj|BAC94964.1| DNA or RNA helicase [Vibrio vulnificus YJ016]
          Length = 930

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 10/105 (9%)

Query: 580 QQGLRILLTVLTKR----MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +Q  R L   ++K+    MA+   +   ++ +R   +HS+  ++ R E +  L  G+  +
Sbjct: 406 RQQTRTLAFCVSKKHADFMAQHFNQTFADKGLRALSVHSD-SSIRRNEALSMLDKGEIQI 464

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           L  ++L  EG D+P    V +L   +     S    IQ +GR  R
Sbjct: 465 LFSVDLFNEGTDLPSIDTVLMLRPTE-----SNIVFIQQLGRGLR 504


>gi|320353576|ref|YP_004194915.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320122078|gb|ADW17624.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 411

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 16/151 (10%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR  E L   L   +   R +  +V   +R+ I+RD + GK  +L+  ++  
Sbjct: 247 RTMIFVNTKREGERLQARLMANDHPCRLISGDVAQEKRLRIMRDFKAGKLPMLIATDVAS 306

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GL I   G+  +++ D           +  IGR AR         A    K+I LA DE
Sbjct: 307 RGLHIE--GVSHVINYD---LPEDCEDYVHRIGRTAR---------AGAEGKAISLA-DE 351

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           T     + +E    H I P    E  + VID
Sbjct: 352 TGVLSLEAIEEYIGHPI-PTEWAEDELFVID 381


>gi|293360060|ref|XP_234487.3| PREDICTED: kinesin family member 4 [Rattus norvegicus]
          Length = 1350

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 62/144 (43%), Gaps = 15/144 (10%)

Query: 147 YHPSGDQP----AAIAQLLKGIHSREKVQLLL-GVTGSGKTFTMAKVIEAMQ--RPAIVM 199
           + PS +Q      A+A L+KGI       +L  G TGSGKT++M     A Q   P I +
Sbjct: 181 FDPSTEQEEVFNTAVAPLIKGIFKGYNATVLAYGQTGSGKTYSMGGAYRANQEDEPTIGV 240

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYF--VSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
            P  I   QL   FK        E+   VSY + Y  E  +    +  EK S I+ + D 
Sbjct: 241 IPRVI---QLL--FKEMEEKRDSEFTLRVSYLEIYN-EEILDLLCSSCEKASQIHIREDP 294

Query: 258 MRHSATRSLLERNDCIVVSSVSCI 281
                T  L E+   +    VSC+
Sbjct: 295 KAGIKTVGLTEKTVSVASDMVSCL 318


>gi|256545180|ref|ZP_05472546.1| transcription-repair coupling factor - superfamily II helicase
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399221|gb|EEU12832.1| transcription-repair coupling factor - superfamily II helicase
           [Anaerococcus vaginalis ATCC 51170]
          Length = 1164

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +++  +L E + + NI + +     K LE+I  + D   G  D+L+   ++  G+DI   
Sbjct: 843 EKIYNELVELIPDANIAIAHGQMSAKNLEKI--MEDFVNGDIDILLATTIIETGMDIQNV 900

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             + + D+D  G L     L   IGR++R
Sbjct: 901 NTIIVYDSDMMG-LSQLYQLKGRIGRSSR 928


>gi|239947193|ref|ZP_04698946.1| type III restriction enzyme, res subunit family [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239921469|gb|EER21493.1| type III restriction enzyme, res subunit family [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 746

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +H ++K  +R +I++  + G+  +LV   ++  G+D+PE  L+ I +A++ G       L
Sbjct: 576 IHGKMKNEQRDQIMKQFKEGEIKILVATTVIEVGIDVPEATLIIIENAEQFGL----AQL 631

Query: 672 IQTIGRAAR 680
            Q  GR  R
Sbjct: 632 HQLRGRVGR 640


>gi|229494982|ref|ZP_04388731.1| transcription-repair coupling factor [Rhodococcus erythropolis
           SK121]
 gi|229318076|gb|EEN83948.1| transcription-repair coupling factor [Rhodococcus erythropolis
           SK121]
          Length = 1208

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 11/114 (9%)

Query: 273 IVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
           ++V++V  +      G+G +E      + L++G  ++   +L  LV+  Y R D+   RG
Sbjct: 128 VIVTTVRSLVQPMAPGLGEIEP-----ITLRVGTEIDFDSVLVRLVEMAYSRVDMVGKRG 182

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
            F V G  +++F S   D   R+  +G+++ E+  F     + + +V+   + A
Sbjct: 183 EFAVRGGILDLF-SPTADHPVRIEFWGDEVSELRYFSVADQRSLADVDVDSVIA 235


>gi|255101722|ref|ZP_05330699.1| ATP-dependent DNA helicase RecG [Clostridium difficile QCD-63q42]
 gi|255307591|ref|ZP_05351762.1| ATP-dependent DNA helicase RecG [Clostridium difficile ATCC 43255]
          Length = 685

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 11/118 (9%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y  ++R+  +H ++K+ E+ E++R  +  + D+LV   ++  G+++P   L+ I +A++ 
Sbjct: 499 YFHDLRLGLLHGKMKSSEKDEVMRLFKNKEIDILVSTTVIEVGVNVPNATLMIIENAERF 558

Query: 663 GFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSI--QLAIDETT----RRREKQLE 713
           G       L Q  GR  R  + S  +L  D+ T     ++AI E T    +  EK LE
Sbjct: 559 GL----AQLHQLRGRVGRGSHKSYCVLIYDSKTDVCRQRMAIMEETNDGFKISEKDLE 612


>gi|167922966|ref|ZP_02510057.1| ATP-dependent DNA helicase [Burkholderia pseudomallei BCC215]
          Length = 581

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612
           PPV +    A    E +YD I   A      L+ V T+RMAE    +L +R     +   
Sbjct: 256 PPVPLGPVMANDVWERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAH 315

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +
Sbjct: 316 HGSLAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFL 370

Query: 673 QTIGRAARNVNS 684
           Q +GR+  ++  
Sbjct: 371 QRVGRSGHHIGG 382


>gi|91199667|emb|CAI78022.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
 gi|96771714|emb|CAI78296.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
 gi|117164259|emb|CAJ87801.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
 gi|126347371|emb|CAJ89079.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
          Length = 499

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +AA+ G R+L+ + TK   + LTE+L    +R   +H      +R   +   + G   VL
Sbjct: 304 IAARDG-RVLMFLDTKHAVDRLTEHLLNSGVRAAALHGGKSQPQRTRTLTQFKDGHVSVL 362

Query: 637 VGINLLREGLDIPECGLVAILD 658
           V  N+   G+ +    LV  +D
Sbjct: 363 VATNVAARGIHVDSLDLVVNVD 384


>gi|3775985|emb|CAA09195.1| RNA helicase [Arabidopsis thaliana]
 gi|9294443|dbj|BAB02563.1| RNA helicase [Arabidopsis thaliana]
          Length = 391

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + L+E +   N  V  MH ++   ER  I+ + R
Sbjct: 250 DLYDTLTIT-----QAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFR 304

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R
Sbjct: 305 SGDSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 350


>gi|114567412|ref|YP_754566.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338347|gb|ABI69195.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 530

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 3/134 (2%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           AQQ    L+   TKR A++L   L  R      +H ++   ER  ++   R G   +LV 
Sbjct: 238 AQQPPISLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTKILVA 297

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +L   GLDI     V   D  ++  L S    +   GRA R+    + L   T  + ++
Sbjct: 298 TDLAARGLDIELVTHVFNFDIPED--LDSYIHRVGRTGRAGRS-GIAITLVEPTQIRLLR 354

Query: 699 LAIDETTRRREKQL 712
           +    T +R E+ L
Sbjct: 355 MIERHTGKRIERAL 368


>gi|332880135|ref|ZP_08447817.1| helicase protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681894|gb|EGJ54809.1| helicase protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 764

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 12/124 (9%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R  +E +Y+ +   A  G + ++  ++   A ++  Y  +  +    + S+    ER  +
Sbjct: 209 RPSIERLYESVRQYAD-GKKGIVYAISISHARNIAGYYNQYGMNTVAIDSKTPANERKRL 267

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL---IQTIGRAARN 681
           + + R GK  VLV +++  EG D P+   + +         R   SL   +Q +GR  R 
Sbjct: 268 VENFRQGKIQVLVNVDVFSEGFDCPDVEFIQL--------ARPTLSLPKYLQQVGRGLRK 319

Query: 682 VNSK 685
              K
Sbjct: 320 TEGK 323


>gi|330448082|ref|ZP_08311730.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492273|dbj|GAA06227.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 627

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLCSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 309 LDVPR--ITHVFNYDIPFDVESYIHRIGRTGRAGR--TGKAILLVRTNQIRMLRTIERVT 364

Query: 706 RRREKQLE 713
           + R ++++
Sbjct: 365 KSRMEEIQ 372


>gi|325281936|ref|YP_004254478.1| transcription-repair coupling factor [Odoribacter splanchnicus DSM
           20712]
 gi|324313745|gb|ADY34298.1| transcription-repair coupling factor [Odoribacter splanchnicus DSM
           20712]
          Length = 1104

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 8/101 (7%)

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H +++  E  +++ D   G +DVL+   ++  GLDIP    + I  A   G     + L 
Sbjct: 784 HGQMEGEELEKVMHDFVRGDYDVLIATTIIESGLDIPNANTMIINQAQNYGL----SDLH 839

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           Q  GR  R+ N K   Y   +T  +   ++   RRR K +E
Sbjct: 840 QLRGRVGRS-NKKAFCY--LLTPPLD-TVNSDARRRLKAIE 876


>gi|170690418|ref|ZP_02881585.1| DEAD/H associated domain protein [Burkholderia graminis C4D1M]
 gi|170144853|gb|EDT13014.1| DEAD/H associated domain protein [Burkholderia graminis C4D1M]
          Length = 1553

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 10/150 (6%)

Query: 540 CQGIIVEQI-IRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           C  I V  I  R   L  PPV + +       E VYD +          L+ V T+RMAE
Sbjct: 254 CAIIDVGHIRARDLALEIPPVPLEAVMPNEVWERVYDRLAELVALHRTTLIFVNTRRMAE 313

Query: 597 DLTEYLYERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
               +L ER  +  V   H  +    R +  + L+ G+  VL+    L  G+DI +  LV
Sbjct: 314 RAARHLTERLGKEAVAAHHGSLAKEHRFDAEQRLKRGELRVLIATASLELGIDIGDVDLV 373

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNS 684
                 + G  R+    +Q +GR+   V  
Sbjct: 374 C-----QMGSPRAIAPFLQRVGRSGHQVGG 398


>gi|148361177|ref|YP_001252384.1| primosomal protein N' [Legionella pneumophila str. Corby]
 gi|296108512|ref|YP_003620213.1| primosomal protein N' (replication factor Y) (superfamily II
           helicase) [Legionella pneumophila 2300/99 Alcoy]
 gi|148282950|gb|ABQ57038.1| Primosomal protein N' (replication factor Y) [Legionella
           pneumophila str. Corby]
 gi|295650414|gb|ADG26261.1| primosomal protein N' (replication factor Y) (superfamily II
           helicase) [Legionella pneumophila 2300/99 Alcoy]
          Length = 725

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKT----FTMAKVIEAMQRPAIVMAPNKILAA 207
           +Q  A+A + + IH  +   LL GVTGSGKT      +AK++E  ++  +V+ P   L  
Sbjct: 199 EQAVAVASIFEHIHHYQCF-LLQGVTGSGKTEVYLHVIAKILEQGKQ-VLVLVPEIGLTP 256

Query: 208 QLYSEFKNFFPH 219
           QL S F   F H
Sbjct: 257 QLLSRFTARFNH 268


>gi|134297355|ref|YP_001121090.1| type III restriction enzyme, res subunit [Burkholderia
           vietnamiensis G4]
 gi|134140512|gb|ABO56255.1| type III restriction enzyme, res subunit [Burkholderia
           vietnamiensis G4]
          Length = 560

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A  + +      +R   +H E+   ER   +R    G   VLV + +L EG D      +
Sbjct: 247 AHAVCQAFNAAGVRASVVHGEMTPAERQSTLRSYESGDVTVLVNVAVLTEGYDYTPTSCI 306

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +L          K++LIQ +GR  R V+
Sbjct: 307 VLLRPSS-----YKSTLIQMVGRGLRVVD 330


>gi|255324480|ref|ZP_05365597.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
           SK141]
 gi|255298386|gb|EET77686.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
           SK141]
          Length = 619

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 9/151 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++   TK   E++ E L +R      ++ ++   +R   +  L+ G+ D+LV  ++   
Sbjct: 297 IIVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAAR 356

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  + + IL+     + +  +I+
Sbjct: 357 GLDVERITHVVNFDIPNDTESYVHR----IGRTGRAGR--SGEAILFVTPRERRMLRSIE 410

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
             T  R ++++      +N +  KEK  + I
Sbjct: 411 RVTNARLEEMDLPSVDEVN-EKRKEKFAQSI 440


>gi|239982147|ref|ZP_04704671.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 381

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A D+ E L  R      +H ++    R + +R  R GK DVLV  ++   G+D+
Sbjct: 177 TKRTAADIAEQLQRRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDV 234


>gi|261856564|ref|YP_003263847.1| transcription-repair coupling factor [Halothiobacillus neapolitanus
           c2]
 gi|261837033|gb|ACX96800.1| transcription-repair coupling factor [Halothiobacillus neapolitanus
           c2]
          Length = 1159

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +RMA+ L + + E  I V +     + LE  +I+ D    +F+VL+   ++  G+D+P  
Sbjct: 832 ERMAKQLADLIPEARIAVAHGQLSERGLE--QIMADFYHQRFNVLLSTTIIESGIDVPTA 889

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 890 NTILINRADKFGL----AQLHQLRGRVGRS 915


>gi|224551506|gb|ACN54195.1| Ddx3y [Bos taurus]
          Length = 635

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 4/106 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +LV   +   G
Sbjct: 445 LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 504

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVI 687
           LDI     V   D   D E ++    +T  +  +G A    N + I
Sbjct: 505 LDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLGLATSFFNERNI 550


>gi|222099455|ref|YP_002534023.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359]
 gi|221571845|gb|ACM22657.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359]
          Length = 750

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 590 LTKRMAEDLTEYLYER---NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L+ + A ++ EYL        RV  MH ++   E+  ++ +   G++D+LV   ++  G+
Sbjct: 564 LSAKSAVEMYEYLSREVFPEFRVGLMHGKLSQEEKDRVMMEFAEGRYDILVSTTVIEVGI 623

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           D+P   ++ I + ++ G       L Q  GR  R 
Sbjct: 624 DVPRANVMVIENPERFGL----AQLHQLRGRVGRG 654


>gi|219684811|ref|ZP_03539753.1| primosomal protein N' [Borrelia garinii PBr]
 gi|219671756|gb|EED28811.1| primosomal protein N' [Borrelia garinii PBr]
          Length = 663

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N ++  + S++  +E I+ I      + D+L+G  ++ +G +      + I++AD    L
Sbjct: 441 NAKIARIDSDITKIENIDSISKFENKEIDILIGTQIIAKGFNFENIKTLGIINADTGIGL 500

Query: 666 -------RSKTSLIQTIGRAARNVNSKVIL 688
                  R  T+L Q +GRAAR  N   I+
Sbjct: 501 PDFRSSERIFTTLSQIMGRAARFKNDNTII 530


>gi|139438943|ref|ZP_01772403.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC
           25986]
 gi|133775654|gb|EBA39474.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC
           25986]
          Length = 749

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ + TK  A+     L  + I+   +H      +R   +   R G  DVLV  ++L 
Sbjct: 310 RTIVFMRTKHRADSCCRRLERKGIKAAAIHGNRSQAQRERALSAFRDGTVDVLVATDVLA 369

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D   E      T  I  IGR  R
Sbjct: 370 RGIDISDVRYVVNFDVPAE-----PTDYIHRIGRTGR 401


>gi|118088913|ref|XP_426195.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 445

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V  K  A+D+   L  + + V+ +H + +  +R + + D + GK  +LV  +L  
Sbjct: 352 KAIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLAS 411

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     F R+    +  +GR  R
Sbjct: 412 RGLDVHDITHVFNFD-----FPRNIEEYVHRVGRTGR 443


>gi|114049936|emb|CAK50953.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens]
 gi|114050158|emb|CAK51191.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens]
          Length = 499

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +AA+ G R+L+ + TK   + LTE+L    +R   +H      +R   +   + G   VL
Sbjct: 304 IAARDG-RVLMFLDTKHAVDRLTEHLLNSGVRAAALHGGKSQPQRTRTLTQFKDGHVSVL 362

Query: 637 VGINLLREGLDIPECGLVAILD 658
           V  N+   G+ +    LV  +D
Sbjct: 363 VATNVAARGIHVDSLDLVVNVD 384


>gi|72382209|ref|YP_291564.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           str. NATL2A]
 gi|72002059|gb|AAZ57861.1| transcription-repair coupling factor [Prochlorococcus marinus str.
           NATL2A]
          Length = 1167

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
           + N  I+ +  S    +   E   +  ++L +GD +   +L   L +  Y + +     G
Sbjct: 116 DENIAIIATERSLQPHLPPFEHLREKCIKLNVGDEINLSDLSLKLSESGYIKSNNIDQEG 175

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           T+   GD I+I+P   E +  R+ +FG+ +++I EF P++ + +  +  + I
Sbjct: 176 TWTRRGDIIDIYPVSSE-LPIRLELFGDLLDKIKEFDPISQRSLDQINNVCI 226


>gi|42526796|ref|NP_971894.1| transcription-repair coupling factor [Treponema denticola ATCC
           35405]
 gi|41817111|gb|AAS11805.1| transcription-repair coupling factor [Treponema denticola ATCC
           35405]
          Length = 1155

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 12/129 (9%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN-----IRVRYM 612
           PVE   A    E V + I   +++G ++    L  R+ E L E L+        I +   
Sbjct: 800 PVETVIAEFNAEKVAEVIRRESERGGQVFY--LHNRV-ESLDETLFMLQSLLPEIMIETA 856

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H ++   +  EI     LG F VL+   ++  G+DIP    + I  AD  G     + L 
Sbjct: 857 HGQMSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTIIIDRADMYGV----SQLY 912

Query: 673 QTIGRAARN 681
           Q  GR  R+
Sbjct: 913 QLRGRVGRS 921


>gi|9633020|ref|NP_050128.1| putative DEAH-family helicase [Lactobacillus phage phiadh]
 gi|5730277|emb|CAB52498.1| putative DEAH-family helicase [Lactobacillus phage phiadh]
          Length = 455

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           + NI  + +  + K  +R + ++D R GK  +LV   L  EG+D+P+C  V +L
Sbjct: 238 KNNIPAKEVDGKTKKEDRDKAMQDFRDGKIKILVNAELYGEGVDVPDCETVIML 291


>gi|643070|gb|AAA80219.1| ribosomal DEAD box protein [Leishmania braziliensis]
          Length = 403

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 14/113 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y+ +++A       ++   T+R  + + E L + N  V  MH+E+   +R  ++   R
Sbjct: 260 DLYETVSIAQS-----VIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFR 314

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            G   VLV  +L+  G+D+    +V   D   +KE +L         IGR  R
Sbjct: 315 SGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYL-------HRIGRGGR 360


>gi|326916320|ref|XP_003204456.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
           [Meleagris gallopavo]
          Length = 571

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V  K  A+D+   L  + + V+ +H + +  +R + + D + GK  +LV  +L  
Sbjct: 414 KAIIFVGKKSTADDIASDLGVKGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLAS 473

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     F R+    +  +GR  R
Sbjct: 474 RGLDVHDITHVFNFD-----FPRNIEEYVHRVGRTGR 505


>gi|325297801|ref|YP_004257718.1| transcription-repair coupling factor [Bacteroides salanitronis DSM
           18170]
 gi|324317354|gb|ADY35245.1| transcription-repair coupling factor [Bacteroides salanitronis DSM
           18170]
          Length = 1122

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 602 LYERNI---RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           + ERNI   RV   H ++K  E  +II D     +DVL+   ++  G+DIP    + I  
Sbjct: 785 MIERNIPDCRVCVGHGQMKPEELEKIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQ 844

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           A   G     + L Q  GR  R+ N K   Y
Sbjct: 845 AQNFGL----SDLHQMRGRVGRS-NKKAFCY 870


>gi|295828376|gb|ADG37857.1| AT1G12770-like protein [Neslia paniculata]
          Length = 190

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 33/66 (50%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  +D+   L  R +    MH ++  L R  +++  + G+  VLV   L   GLD+ EC 
Sbjct: 87  RQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECD 146

Query: 653 LVAILD 658
           LV  L+
Sbjct: 147 LVVNLE 152


>gi|282878161|ref|ZP_06286958.1| ATP-dependent DNA helicase RecQ [Prevotella buccalis ATCC 35310]
 gi|281299739|gb|EFA92111.1| ATP-dependent DNA helicase RecQ [Prevotella buccalis ATCC 35310]
          Length = 725

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 29/210 (13%)

Query: 490 DFHRKATLAEYGFRLPSCM-----DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544
           +F +   ++ Y      C+     D RP    E+  +RPT   +   P           +
Sbjct: 130 EFLKTVKISFYAIDEAHCISEWGHDFRP----EYRNIRPTINKIGDAPVIALTATATDKV 185

Query: 545 VEQIIRPTGLVDP---------PVEIRSARTQVEDVYDEINLAAQQ--GLRILLTVLTKR 593
              I R  G+ D          P      R +  D+  +I +  +Q  G   ++  L+++
Sbjct: 186 RTDIKRSLGIADAREFKSSFNRPNLYYEVRQKASDIDRQIIMFIRQHEGKSGIIYCLSRK 245

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E+L+E L   NI+    H+ + +  R +   D  + + DV+V       G+D P+   
Sbjct: 246 KVEELSEVLKANNIKAAPYHAGLDSATRSQTQDDFLMERIDVIVATIAFGMGIDKPDVRF 305

Query: 654 VAILDADK--EGFLRSKTSLIQTIGRAARN 681
           V   D  K  EG+        Q  GRA R+
Sbjct: 306 VIHYDIPKSLEGYY-------QETGRAGRD 328


>gi|239930667|ref|ZP_04687620.1| DEAD-box RNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291439029|ref|ZP_06578419.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341924|gb|EFE68880.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 496

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +AA+ G R+++ + TK   + LTE+L +  +R   +H      +R   +   + G  +VL
Sbjct: 304 IAARDG-RVIMFLDTKHAVDRLTEHLLKSGVRAASLHGGKSQPQRTRTLTQFKNGHVNVL 362

Query: 637 VGINLLREGLDIPECGLVAILD 658
           V  N+   G+ +    LV  +D
Sbjct: 363 VATNVAARGIHVDSLDLVVNVD 384


>gi|27262308|gb|AAN87435.1| transcription-repair coupling factor [Heliobacillus mobilis]
          Length = 388

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R+A DL   +   ++RV   H +++  +  +I+ D   G++D+LV   ++  GLDIP   
Sbjct: 99  RIARDLMAMI--PDVRVAVGHGKMREDQLEQIMLDFLEGEYDILVCTTIIETGLDIPNVN 156

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + +  AD  G     + L Q  GR  R+
Sbjct: 157 TLIVDGADLMGL----SQLYQLRGRVGRS 181


>gi|74210167|dbj|BAE21355.1| unnamed protein product [Mus musculus]
          Length = 690

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 418 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 477

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 478 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 513


>gi|13470981|ref|NP_102550.1| ATP-dependent DNA helicase RecG [Mesorhizobium loti MAFF303099]
 gi|14021724|dbj|BAB48336.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099]
          Length = 702

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 14/103 (13%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+  +H  +K  E+ E +R  + G+  +L+   ++  G+D+P+  ++ I  A++ G    
Sbjct: 519 RIGLVHGRMKGAEKDEAMRAFKEGETRILIATTVIEVGVDVPDATVMVIEHAERFGL--- 575

Query: 668 KTSLIQTIGRAARN--VNSKVILYADTITKSIQLAIDETTRRR 708
              L Q  GR  R    +S V+LY D         + ET +RR
Sbjct: 576 -AQLHQLRGRVGRGDKPSSCVLLYKDP--------LGETAKRR 609


>gi|88808500|ref|ZP_01124010.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 7805]
 gi|88787488|gb|EAR18645.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 7805]
          Length = 831

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +++V  +H  + + E+  +I+    G+  VLV   ++  G+D+PE  ++ I  AD+ G  
Sbjct: 650 DLKVGLLHGRLPSAEKQAVIQAFARGETQVLVSTTVVEVGVDVPEASVMMIDHADRFGL- 708

Query: 666 RSKTSLIQTIGRAARN-VNSKVILYADT 692
                L Q  GR  R    S+ +L  D+
Sbjct: 709 ---AQLHQLRGRVGRGAAASRCLLINDS 733


>gi|150016695|ref|YP_001308949.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903160|gb|ABR33993.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 480

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   + + ++L  +   V  +H  +   ER+ I+   RLG F +LV  +L   
Sbjct: 244 VVIFAKTKENVDTVFQWLKSKGYSVNRIHGGMLQKERLSIMDGFRLGDFRILVSTDLASR 303

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D+   G+  +++ D       K + +  IGR  R
Sbjct: 304 GIDVK--GITHVINYD---LPVEKEAYVHRIGRTGR 334


>gi|322792436|gb|EFZ16420.1| hypothetical protein SINV_14603 [Solenopsis invicta]
          Length = 261

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 8/146 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R+A  +   L ERN+ V  + +++   +R  ++      +  VL+  + L  GLDI +  
Sbjct: 105 RLALLMQSLLSERNVTVGELSAQLAPKQRESVLGKFANAEIHVLISSDALARGLDILDVQ 164

Query: 653 LVAILDADK--EGFLRSKTSLIQTIGRAARNVNSKVILYADTIT--KSIQLAIDETTRRR 708
           LV   D  K  +G++          GRA +   +  IL A+ I   K +  A  +T    
Sbjct: 165 LVVSYDCPKHIKGYIHRAGR----TGRAGKPGTAVSILTANQIGIFKQMLSAAHKTVPNI 220

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVID 734
           E+   H     +N QS ++K++E+++
Sbjct: 221 EQMDLHAIAKMVNYQSHRQKLIEILE 246


>gi|312793225|ref|YP_004026148.1| primosomal protein n' [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180365|gb|ADQ40535.1| primosomal protein N' [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 724

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 11/107 (10%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI--EIIRDLRLGKFDVLVGINLLREGLDI 648
           T+++ E++  Y   ++ RV  M S+  + +    ++++  R  + D+LVG  ++ +GL  
Sbjct: 488 TQKIEEEIKVYF--KDARVLRMDSDTTSKKDATQQLLKKFREKEADILVGTQMIAKGLHF 545

Query: 649 PECGLVAILDADKEGFL-------RSKTSLIQTIGRAARNVNSKVIL 688
           P+  LV ++DAD    +       R+   L Q  GR+ R    KVI+
Sbjct: 546 PDLTLVGVIDADILLNMPDFRSRERTFQLLTQVAGRSGREKPGKVII 592


>gi|296231554|ref|XP_002761077.1| PREDICTED: ATP-dependent RNA helicase DDX19B [Callithrix jacchus]
          Length = 456

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 3/100 (3%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           ++   ++ T++ A  L   L +   +V  +  E+   +R  +I   R GK  VLV  N+ 
Sbjct: 311 IKQFFSLQTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVC 370

Query: 643 REGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
             G+D+ +  +V   D   DK+G   ++T L   IGR  R
Sbjct: 371 ARGIDVEQVSVVINFDLPVDKDGNPDNETYL-HRIGRTGR 409


>gi|260177190|gb|ACX33914.1| putative ATP-dependent DNA helicase RecG [uncultured prokaryote
           AT3]
          Length = 695

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 8/101 (7%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTE L E    V  +H  +K  E+   + +   G+  VLV   ++  G+D+P   L+ I 
Sbjct: 513 LTEALPE--FAVGLVHGRLKADEKAWAMAEFNAGRTQVLVATTVIEVGVDVPNASLMVIE 570

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKV--ILYADTITKS 696
            A++ G     + L Q  GR  R     V  ++YA  ++++
Sbjct: 571 HAERFGL----SQLHQLRGRVGRGTADSVCILIYAAPLSQT 607


>gi|302534880|ref|ZP_07287222.1| transcription-repair coupling factor [Streptomyces sp. C]
 gi|302443775|gb|EFL15591.1| transcription-repair coupling factor [Streptomyces sp. C]
          Length = 1179

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 43/215 (20%), Positives = 92/215 (42%), Gaps = 22/215 (10%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           + + F +A +     R  + +      A  L +  ++  P + V  + ++ +    E   
Sbjct: 38  AARPFAIAALAARTGRTVLAVTATGREAEDLAAALRSLLPPDEVVDYPAW-ETLPHERLS 96

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQM 293
           PR+DT   + + +     R+ H +          +VV+ +  +      G+G +     +
Sbjct: 97  PRSDTVGRRIAVLR----RLAHPSKDDPAAGPVSVVVAPIRSVLQPQVKGLGDL-----L 147

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            V L+ GD+ +   +  +L    Y R ++   RG F V G  +++FP   E+   RV  +
Sbjct: 148 PVSLRQGDTTDLGVVTEALAAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRVEFW 206

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           G+++EEI  F      K+ +  +++I  +  +  P
Sbjct: 207 GDEVEEIRYF------KVADQRSLEIAEHGLWAPP 235


>gi|212223874|ref|YP_002307110.1| DEAD/DEAH box RNA helicase [Thermococcus onnurineus NA1]
 gi|212008831|gb|ACJ16213.1| DEAD/DEAH box RNA helicase [Thermococcus onnurineus NA1]
          Length = 891

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 8/96 (8%)

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI RD + GK  VL+  N L  G+DI +  +V       +G      SLIQ  GRA R
Sbjct: 319 RWEIERDFKEGKLLVLLTTNALELGIDIGDLDVVINYGIPPDGLF----SLIQRFGRAGR 374

Query: 681 NVN----SKVILYADTITKSIQLAIDETTRRREKQL 712
             +    + ++L  + +    +  +DE   + EK +
Sbjct: 375 KADREAINGIVLRKNGLDYYYKEHVDELVEKLEKGI 410


>gi|195977163|ref|YP_002122407.1| transcription-repair coupling factor [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195973868|gb|ACG61394.1| transcription-repair coupling factor [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 1164

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 1/115 (0%)

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+++ I R+   A  S  E    +V+S       + S +++ Q  + L +G   +  ++
Sbjct: 93  SSMDKTISRIEALAFLSNPEARGILVISLAGLRILLPSPKTFQQGQIDLAVGVDTDLDKI 152

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           +  LVK  Y+R    +  G F   GD ++++    +D+  R+  FG++I+ I  F
Sbjct: 153 VKKLVKIGYQRVAQVLSPGEFSRRGDILDVYEV-TQDLPVRIEFFGDEIDGIRSF 206



 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 32/176 (18%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
           ++ LE   G+I E IIR                QV  VY++++             + K+
Sbjct: 799 TYVLENNPGLIREAIIREM----------DRGGQVFYVYNKVD------------TIDKK 836

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +AE L E + E +I   ++H ++  ++    + D   G +DVLV   ++  G+DI     
Sbjct: 837 VAE-LQELVPEASIG--FVHGQMSDIQLENTLMDFINGDYDVLVATTIIETGVDISNVNT 893

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           + I +AD  G     ++L Q  GR  R   S  I YA  + K  ++  + + +R E
Sbjct: 894 LFIENADHMGL----STLYQLRGRVGR---SNRIAYAYLMYKPDKVLTEVSEKRLE 942


>gi|154508882|ref|ZP_02044524.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798516|gb|EDN80936.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC
           17982]
          Length = 722

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+   E+++  L  R  R   +  +V   ER  ++  L+ G  DVLV  ++   G
Sbjct: 297 IVFVRTRADVEEVSLELSSRGFRAAGISGDVAQTERERMVERLKNGSLDVLVATDVAARG 356

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LD+    LV   D  +E       + +  IGR  R
Sbjct: 357 LDVERISLVVNFDVPRE-----PEAYVHRIGRTGR 386


>gi|78187607|ref|YP_375650.1| hypothetical protein Plut_1753 [Chlorobium luteolum DSM 273]
 gi|78167509|gb|ABB24607.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
          Length = 201

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 29/50 (58%)

Query: 747 SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +I+ +Q         A L  L+  +  A  + N+EEAAR+RDEI RLKSS
Sbjct: 151 AIEPEQAEFLTPGPGARLDELQAALGEAVKSENYEEAARLRDEISRLKSS 200


>gi|3646126|emb|CAA09374.1| ATP-dependent RNA helicase [Homo sapiens]
          Length = 420

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R  E   E +YE  I V  +H+E    +R   +   R GK  VL+   LL  G+D    
Sbjct: 244 ERAKELFHELIYE-GINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGV 302

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            LV   D     F  S    I  IGR  R  N
Sbjct: 303 NLVINYD-----FPTSSVEYIHRIGRTGRAGN 329


>gi|194334659|ref|YP_002016519.1| ATP-dependent DNA helicase RecG [Prosthecochloris aestuarii DSM
           271]
 gi|194312477|gb|ACF46872.1| ATP-dependent DNA helicase RecG [Prosthecochloris aestuarii DSM
           271]
          Length = 712

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           +R+  +H  +K  E+  I+   R G  DVLVG  ++  G+D+P   ++ I  A++ G   
Sbjct: 529 LRIGLVHGRMKPAEKELIMDRFRQGDVDVLVGTTVIEVGVDVPNATVMVIEHAERFGL-- 586

Query: 667 SKTSLIQTIGRAARN 681
               L Q  GR  R 
Sbjct: 587 --AQLHQLRGRVGRG 599


>gi|322806778|emb|CBZ04347.1| helicase PriA essential for oriC/DnaA-independent DNA replication
           [Clostridium botulinum H04402 065]
          Length = 735

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 10/111 (9%)

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169
           + S N L+K+G  +   ++  +N +++ I  +    +   +GDQ  A+ ++L   +S  K
Sbjct: 166 LSSINTLIKHG--FLIQKNQVVNRYNEKI--YGNYKEKILNGDQSLALYRIL---NSNRK 218

Query: 170 VQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFF 217
           + L+ GVTGSGKT     +++ +    + +I++ P   L  Q+   FK  F
Sbjct: 219 LFLIHGVTGSGKTEIYMHLVKKLIEKDKDSIILVPEISLTPQMVERFKGRF 269


>gi|261867897|ref|YP_003255819.1| excinuclease ABC subunit C [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413229|gb|ACX82600.1| excinuclease ABC, C subunit [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 609

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 4/50 (8%)

Query: 750 AQQLSLSK----KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AQQ++ ++     K +  L  L KQM  A+  LNFEEAARIRD+I+ +++
Sbjct: 187 AQQVNFARLFLQGKDQQVLDHLVKQMEQASQQLNFEEAARIRDQIQAVRA 236


>gi|239926683|ref|ZP_04683636.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 471

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 6/112 (5%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +AA+ G R+LL + TK   + LT +L    +    +HS     +R   +   + G+  VL
Sbjct: 263 IAARDG-RVLLFLDTKHAVDQLTRHLRASGVHAGALHSGKSQPQRTRTLAQFKNGQLTVL 321

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  N+   GL + +  LV  +D   +         +   GR AR   S  ++
Sbjct: 322 VATNVAARGLHVDDLDLVVNVDPPTD-----PKDYVHRAGRTARAGESGSVV 368


>gi|229048004|ref|ZP_04193580.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH676]
 gi|228723461|gb|EEL74830.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH676]
          Length = 436

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA+ + + L ER ++V  +H ++   +R ++++ +R  +F  +V  +L   G+DI  
Sbjct: 255 TKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
            G+  +++ +    L      +  +GR AR  +S +
Sbjct: 314 -GISHVINYELPSDL---DFFVHRVGRTARAGHSGI 345


>gi|237732562|ref|ZP_04563043.1| ATP-dependent RNA helicase SrmB [Citrobacter sp. 30_2]
 gi|226908101|gb|EEH94019.1| ATP-dependent RNA helicase SrmB [Citrobacter sp. 30_2]
          Length = 442

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L +  I   Y+  E+   +R E I+ L  G+ +VL
Sbjct: 243 LKQPEATRSIVFVRKRERVHELAGWLRQAGINNCYLEGEMVQNKRNEAIKRLTDGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR  R
Sbjct: 303 VATDVAARGIDIPDVSHVFNFD-----MPRSGDAYLHRIGRTGR 341


>gi|227495476|ref|ZP_03925792.1| superfamily II helicase [Actinomyces coleocanis DSM 15436]
 gi|226831023|gb|EEH63406.1| superfamily II helicase [Actinomyces coleocanis DSM 15436]
          Length = 616

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+  A+++   +  R      +  +V   ER  I+  LR G  DVLV  ++   G
Sbjct: 250 IVFVRTRVDADEVAVDMATRGFTAAAISGDVSQNERERIVSRLRDGSLDVLVATDVAARG 309

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LD+   GLV   D  +E       + +  +GR  R
Sbjct: 310 LDVERIGLVINFDVPRE-----TEAYVHRVGRTGR 339


>gi|169630612|ref|YP_001704261.1| ATP-dependent DEAD-box RNA helicase [Mycobacterium abscessus ATCC
           19977]
 gi|169242579|emb|CAM63607.1| Probable ATP-dependent DEAD-box RNA helicase [Mycobacterium
           abscessus]
          Length = 490

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           TKR A+ +++ L ER   V  +H ++  + R + +   R G+ +VLV  ++   G+DI
Sbjct: 269 TKRTAQKVSDELAERGFAVGAVHGDLGQIAREKALTSFRSGQINVLVATDVAARGIDI 326


>gi|145220338|ref|YP_001131047.1| hypothetical protein Cvib_1534 [Prosthecochloris vibrioformis DSM
           265]
 gi|145206502|gb|ABP37545.1| protein of unknown function DUF151 [Chlorobium phaeovibrioides DSM
           265]
          Length = 203

 Score = 38.9 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 26/39 (66%)

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           K  +   +SL+  +  A  + N+EEAAR+RDEI RLKSS
Sbjct: 164 KGAENRFESLQAALSEAVQSENYEEAARLRDEISRLKSS 202


>gi|113197619|gb|AAI21228.1| ddx52 protein [Xenopus (Silurana) tropicalis]
          Length = 595

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  E   E +YE  I V  +H+E    +R  +I+  R GK  VL+   LL  G+D     
Sbjct: 430 RAKELFHELIYE-GINVDVIHAERTQQQRDNVIQSFREGKIWVLICTALLARGIDFKGVN 488

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +V   D     F  S    I  IGR  R
Sbjct: 489 MVINYD-----FPTSAVEYIHRIGRTGR 511


>gi|90579501|ref|ZP_01235310.1| putative transcription-repair coupling factor [Vibrio angustum S14]
 gi|90439075|gb|EAS64257.1| putative transcription-repair coupling factor [Vibrio angustum S14]
          Length = 1153

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 57/296 (19%), Positives = 121/296 (40%), Gaps = 36/296 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+    + A+V  + + P + + P+   A +L  E   F      +  V+ +  ++  
Sbjct: 24  IKGAALALSFAEVAASHKGPVLAVVPDTQTALKLQPEITQF-----CDVEVNVFPDWETL 78

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            Y    D +   +  I+E++ R+    +    +++  I+V   + +      E   Q  +
Sbjct: 79  PY----DNFSPHQDIISERLARLYKMPS----QKSGIILVPISTLLQRQTPREFIHQHAL 130

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD +  ++L   L    Y+  D  +  G +   G  +++FP   +   +R+  F +
Sbjct: 131 IVKAGDRMSLEKLRLQLEVSGYRHVDQVMEHGEYASRGSLLDLFPMGSQS-PYRIDFFDD 189

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +++ I +F P   +    +++I +     +    PT   A+    E  +MR  E      
Sbjct: 190 EVDSIRQFDPDNQRSTGEIDSIDLLPAHEF----PTDEIAV----ENFRMRWRE------ 235

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             EA+R  + I    + +        IE +      +       TLF+Y+P+ SLL
Sbjct: 236 RFEARREPESI---YQQVSKRTWPAGIEYWQPLFFDKT-----ETLFDYLPDTSLL 283


>gi|85057845|ref|YP_456761.1| primosomal protein N' [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789950|gb|ABC65682.1| primosomal protein N' [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 813

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 14/126 (11%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           E +  Y+ +  +  R +  +  T+ +I    ++  D    K D+L+G  ++ +GLD  + 
Sbjct: 583 EYIEAYIKKEFLHARLIKFDSDTITKISQYEKLWNDFNQEKADILLGTQMIAKGLDFHKV 642

Query: 652 GLVAILDADK-------EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            LV IL AD        +G  ++   +IQ  GR  R    KVI+ +  +      AI+  
Sbjct: 643 TLVGILMADSLLKIPSFKGSEKTFQLIIQAAGRCGRKEQGKVIVQSYNVD---HFAINAA 699

Query: 705 TRRREK 710
            +  EK
Sbjct: 700 VKYEEK 705


>gi|56477451|ref|YP_159040.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
 gi|56313494|emb|CAI08139.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
          Length = 463

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR AE+++  L E+      +H ++    R   +  LR G+  VLV  ++   G+D+  
Sbjct: 254 TKRGAEEVSLNLQEKGFSAAALHGDMHQTARNRTLDKLRQGRIGVLVATDVAARGIDV-- 311

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            G+  +++ D    +      I   GRA R+
Sbjct: 312 AGISHVINFDAPRQVEDYVHRIGRTGRAGRD 342


>gi|49065444|emb|CAG38540.1| DDX19 [Homo sapiens]
          Length = 448

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++Y  I +A     + ++   T++ A  L   L +   +V  +  EV   +R  +I   R
Sbjct: 295 NLYGAITIA-----QAMIFCHTRKTASWLAAELSKEGHQVALLSGEVMVEQRAAVIERFR 349

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            GK  VLV  N+   G+D+ +  +V   D   DK+G   ++T L   IGR  R
Sbjct: 350 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYL-HRIGRTGR 401


>gi|94311874|ref|YP_585084.1| ATP-dependent DNA helicase RecG [Cupriavidus metallidurans CH34]
 gi|93355726|gb|ABF09815.1| ATP-dependent DNA helicase [Cupriavidus metallidurans CH34]
          Length = 737

 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++RV  +H  +   E+  ++ D    +  VLV   ++  G+D+P   L+ I  A++ G  
Sbjct: 561 DLRVGLVHGRLPPAEKAAVMDDFTANRLQVLVATTVIEVGVDVPNASLMVIEHAERFGL- 619

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
                L Q  GR  R     V L
Sbjct: 620 ---AQLHQLRGRVGRGSAESVCL 639


>gi|283832032|ref|ZP_06351773.1| ATP-dependent RNA helicase SrmB [Citrobacter youngae ATCC 29220]
 gi|291071651|gb|EFE09760.1| ATP-dependent RNA helicase SrmB [Citrobacter youngae ATCC 29220]
          Length = 442

 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +  R ++ V  +    +L  +L +  I   Y+  E+   +R E I+ L  G+ +VL
Sbjct: 243 LKQPEATRSIVFVRKRERVHELAGWLRQAGINNCYLEGEMVQNKRNEAIKRLTDGRVNVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  ++   G+DIP+   V   D       RS  + +  IGR  R
Sbjct: 303 VATDVAARGIDIPDVSHVFNFD-----MPRSGDAYLHRIGRTGR 341


>gi|253575775|ref|ZP_04853110.1| primosomal protein N' [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844818|gb|EES72831.1| primosomal protein N' [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 854

 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFKNFF 217
           R +V LL GVTGSGKT    + IE   A  R AIV+ P   L  Q+   FK  F
Sbjct: 316 RHEVFLLHGVTGSGKTEVYLQTIERCIASGRQAIVLVPEISLTPQMVERFKGRF 369


>gi|226360440|ref|YP_002778218.1| ATP-dependent DNA helicase [Rhodococcus opacus B4]
 gi|226238925|dbj|BAH49273.1| putative ATP-dependent DNA helicase [Rhodococcus opacus B4]
          Length = 699

 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 6/104 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++  LT   A DL   L E+   V     +    ER  + +DL   +   LV  + L  G
Sbjct: 253 IIYALTVSAARDLASLLSEQGHTVAAYTGQTDAAERETLEQDLLGNRVKALVATSALGMG 312

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVIL 688
            D P+ G V  L A       S  S  Q +GRA R+ + ++VIL
Sbjct: 313 FDKPDLGFVVHLGAPS-----SPISYYQQVGRAGRSTDRAEVIL 351


>gi|261419368|ref|YP_003253050.1| primosome assembly protein PriA [Geobacillus sp. Y412MC61]
 gi|319766183|ref|YP_004131684.1| primosomal protein N' [Geobacillus sp. Y412MC52]
 gi|261375825|gb|ACX78568.1| primosomal protein N' [Geobacillus sp. Y412MC61]
 gi|317111049|gb|ADU93541.1| primosomal protein N' [Geobacillus sp. Y412MC52]
          Length = 801

 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 153 QPAAIAQLLKGIHSRE-KVQLLLGVTGSGKT-FTMAKVIEAMQ--RPAIVMAPNKILAAQ 208
           Q AA+A++   + + E +  LL GVTGSGKT   M  + EA++  + AIV+ P   L  Q
Sbjct: 268 QEAALAKIAASVRAGEHRTFLLYGVTGSGKTEVYMQAIDEALRQGKEAIVLVPEISLTPQ 327

Query: 209 LYSEFKNFF 217
           +   FK+ F
Sbjct: 328 MVERFKSRF 336


>gi|326924964|ref|XP_003208692.1| PREDICTED: probable ATP-dependent RNA helicase DDX59-like
           [Meleagris gallopavo]
          Length = 625

 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +L+ V  K  A+ L++ +++   ++   MHSE   +ER  I++ L   K++V+V   +L 
Sbjct: 453 VLVFVDCKLGADLLSDAVHKITGLQCTSMHSEKSQVERTAILQGLLQEKYEVIVSTGVLG 512

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+    LV   D        S    +  +GRA R
Sbjct: 513 RGLDLVNVKLVVNFDMPS-----SMDEYVHQVGRAGR 544


>gi|193705838|ref|XP_001944503.1| PREDICTED: ATP-dependent RNA helicase DDX19A-like [Acyrthosiphon
           pisum]
          Length = 464

 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA  L   + E+   V  +  E+   +RI ++   R GK  VLV  N+L  G+DI +
Sbjct: 325 TKKMALWLVNQMAEQGHAVALLSGELTVQQRISVLDRFREGKEKVLVTTNVLSRGIDIEQ 384

Query: 651 CGLVAILD 658
             +V   D
Sbjct: 385 VTIVINFD 392


>gi|171911382|ref|ZP_02926852.1| DNA/RNA helicase, ATP-dependent, DEAD-box family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 314

 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 12/108 (11%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD----ADKEG 663
           +V  MHS++   +R + ++  R G FD++V  +L   GLD+   G+  +++     + E 
Sbjct: 181 KVAVMHSDINQRDREKALQGFRDGAFDIIVATDLAARGLDV--SGVTHVINYMVPENPED 238

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTIT--KSIQLAIDETTRRRE 709
           ++      I   GRA +  ++  +  AD I+   SI+  ID+   RR+
Sbjct: 239 YVHR----IGRTGRAQKEGDAFTLFAADEISYVHSIERLIDQKIERRK 282


>gi|167533981|ref|XP_001748669.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772910|gb|EDQ86556.1| predicted protein [Monosiga brevicollis MX1]
          Length = 592

 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           K+  +D+ EYL  + +    +H      ER   ++  + G+ DVLV  ++  +GLD P+ 
Sbjct: 412 KQDVDDIHEYLLLKGVHAAAIHGSKDQEERDMAVKGFKEGRKDVLVATDIASKGLDFPDI 471

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             V   D  +E       + +  IGR  R+
Sbjct: 472 KHVINFDMPEE-----LENYVHRIGRTGRS 496


>gi|89072916|ref|ZP_01159473.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89051438|gb|EAR56893.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 654

 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 275 IVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVVARG 334

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 335 LDVPR--ITHVFNYDIPFDVESYIHRIGRTGRAGR--AGKAILLVRTNQIRMLRTIERVT 390

Query: 706 RRREKQLE 713
           + R ++++
Sbjct: 391 KSRMEEIQ 398


>gi|332139978|ref|YP_004425716.1| ATP-dependent RNA helicase RhlB [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550000|gb|AEA96718.1| ATP-dependent RNA helicase RhlB [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 429

 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   E +T++L     RV  +  +V   +R+ I+ D   GK DVLV  ++   GL I  
Sbjct: 265 TKHSCEKVTDWLTADGHRVGLLSGDVPQKKRLGILEDFTKGKLDVLVATDVAARGLHIDA 324

Query: 651 CGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              V   D   D E +       +  IGR  R   S + +
Sbjct: 325 VTHVFNYDLPDDAEDY-------VHRIGRTGRAGQSGIAI 357


>gi|320539477|ref|ZP_08039146.1| excinuclease UvrABC, endonuclease subunit [Serratia symbiotica str.
           Tucson]
 gi|320030602|gb|EFW12612.1| excinuclease UvrABC, endonuclease subunit [Serratia symbiotica str.
           Tucson]
          Length = 517

 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +D   L LS K  +  L  L +QM  A+  LNFEEAARIRD+I+ ++S
Sbjct: 192 VDYVHLFLSGKDQQV-LNQLIEQMENASKRLNFEEAARIRDQIQAVRS 238


>gi|320155900|ref|YP_004188279.1| helicase-related protein [Vibrio vulnificus MO6-24/O]
 gi|319931212|gb|ADV86076.1| helicase-related protein [Vibrio vulnificus MO6-24/O]
          Length = 968

 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 10/110 (9%)

Query: 580 QQGLRILLTVLTKR----MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +Q  R L   ++K+    MA+   +   ++ +R   +HS+  ++ R E +  L  G+  +
Sbjct: 444 RQQTRTLAFCVSKKHADFMAQHFNQTFADKGLRALSVHSD-SSIRRNEALSMLDKGEIQI 502

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           L  ++L  EG D+P    V +L   +     S    IQ +GR  R    K
Sbjct: 503 LFSVDLFNEGTDLPSIDTVLMLRPTE-----SNIVFIQQLGRGLRRHKGK 547


>gi|284054183|ref|ZP_06384393.1| transcription-repair coupling factor [Arthrospira platensis str.
           Paraca]
          Length = 1152

 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           V  +    + LK+G +   K +   L +  Y+R  +    G +   GD +++FP   E +
Sbjct: 121 VSDFQSYCLPLKLGMTCAGKTIDQKLAQLGYQRVTVVETEGQWSRRGDIVDVFPVASE-L 179

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
             R+  FG+++E + E  P+T + +  V+ + I   +H+
Sbjct: 180 PVRLEWFGDELERMRELDPVTQRSLDRVDQL-ILTPTHF 217


>gi|206901942|ref|YP_002250862.1| ATP-dependent DNA helicase RecG [Dictyoglomus thermophilum H-6-12]
 gi|206741045|gb|ACI20103.1| ATP-dependent DNA helicase RecG [Dictyoglomus thermophilum H-6-12]
          Length = 778

 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            K++ E+L ++      ++  +H  V + ER  I+ + + G+  +LV   ++  G+DIP 
Sbjct: 582 AKKLYEELKKFF--PQFKIGLIHGLVPSEERNRIMEEFQNGEIQILVATTVIEVGVDIPN 639

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             ++ I DA + G       L Q  GR  R 
Sbjct: 640 ASIMVIEDAHRFGL----AQLHQLRGRVGRG 666


>gi|221054171|ref|XP_002261833.1| DEAD/DEAH box helicase [Plasmodium knowlesi strain H]
 gi|193808293|emb|CAQ38996.1| DEAD/DEAH box helicase, putative [Plasmodium knowlesi strain H]
          Length = 906

 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 16/113 (14%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V Y+H ++  + R ++ +  R  +F +LV  ++   GLD P+  LV   D   E     
Sbjct: 798 QVNYLHGKMSQVRRQDVFQQFRDREFQILVATSIAARGLDFPDLELVINYDLPAE----- 852

Query: 668 KTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
               +  IGR  R       I Y ++  K I   ID       K ++H +KHN
Sbjct: 853 FEQYMHRIGRTGRIGKTGLAINYFNSSNKKI---ID-------KLIDHLRKHN 895


>gi|170726164|ref|YP_001760190.1| transcription-repair coupling factor [Shewanella woodyi ATCC 51908]
 gi|169811511|gb|ACA86095.1| transcription-repair coupling factor [Shewanella woodyi ATCC 51908]
          Length = 1157

 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           KR AE ++E L E   RV   H +++  E  +++ D    +F+VLV   ++  G+DIP  
Sbjct: 832 KRAAE-ISELLPE--ARVITAHGQMRERELEKVMSDFYHQRFNVLVCTTIIETGIDIPSA 888

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 889 NTIVIERADKFGL----AQLHQLRGRVGRS 914


>gi|6320449|ref|NP_010529.1| Prp28p [Saccharomyces cerevisiae S288c]
 gi|1172596|sp|P23394|PRP28_YEAST RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28;
           AltName: Full=Helicase CA8
 gi|666103|emb|CAA40255.1| pre-mRNA splicing factor RNA helicase PRP28 (helicase CA8)
           [Saccharomyces cerevisiae]
 gi|817829|emb|CAA89729.1| Prp28p [Saccharomyces cerevisiae]
 gi|285811259|tpg|DAA12083.1| TPA: Prp28p [Saccharomyces cerevisiae S288c]
          Length = 588

 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 585 ILLTVLTKRMAEDLTE-YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           I++ +  K+ A+ L E +  E N++V  +H      +R   ++  R  K  +++  N+  
Sbjct: 439 IIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIATNVAA 498

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDIP   LV      K+         I  IGR  R  N
Sbjct: 499 RGLDIPNVSLVVNFQISKK-----MDDYIHRIGRTGRAAN 533


>gi|67469885|ref|XP_650914.1| recQ family helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56467579|gb|EAL45525.1| recQ family helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 1182

 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 9/130 (6%)

Query: 564 ARTQVEDVYDEINLAAQ---QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
            R + + V DEI    +   +G   ++  L+++   D+ + L +R I+ +Y H+ + T E
Sbjct: 663 VRPKTKGVIDEIEEMIKRKYKGQSGIIYCLSQKNTMDIAQELNKRGIKSKYYHAGMDTKE 722

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  + ++   G+F+V+        G+D P+   V           +S     Q  GRA R
Sbjct: 723 RTTVQKEWCDGEFNVICATIAFGMGIDKPDVRFVI-----HHSLPKSLEGYYQESGRAGR 777

Query: 681 NVN-SKVILY 689
           +   +  ILY
Sbjct: 778 DGEPADCILY 787


>gi|306830720|ref|ZP_07463885.1| competence protein FA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304427228|gb|EFM30335.1| competence protein FA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 433

 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT-- 674
           KT  R+EI+   R  +  +LV   +L  G+  P   +  +L   +   L +K++L+Q   
Sbjct: 336 KTENRLEIVEKFRKQELSILVTTTILERGVTFPCVDVFVVLANHR---LYTKSALVQISG 392

Query: 675 -IGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
            +GRAA     +++   D  TK ++ AI E     +K
Sbjct: 393 RVGRAAERPTGELLFLHDGSTKEMRKAIAEIKAMNKK 429


>gi|293192664|ref|ZP_06609618.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
 gi|292820171|gb|EFF79168.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
          Length = 722

 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+   E+++  L  R  R   +  +V   ER  ++  L+ G  DVLV  ++   G
Sbjct: 297 IVFVRTRADVEEVSLELSSRGFRAAGISGDVAQTERERMVERLKNGSLDVLVATDVAARG 356

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LD+    LV   D  +E       + +  IGR  R
Sbjct: 357 LDVERISLVVNFDVPRE-----PEAYVHRIGRTGR 386


>gi|291464067|gb|ADE05571.1| increased size exclusion limit 1a [Nicotiana benthamiana]
          Length = 551

 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK++ +D    L  R ++   +H ++  L R  I++  R G+  VL+   L   GLD+PE
Sbjct: 423 TKQL-KDAVFKLEARGMKAAELHGDLSKLVRSTILKKFRNGEVRVLLTNELSARGLDLPE 481

Query: 651 CGLVAIL 657
           C LV  L
Sbjct: 482 CDLVVNL 488


>gi|254571525|ref|XP_002492872.1| RNA helicase in the DEAD-box family, necessary for prespliceosome
           formation [Pichia pastoris GS115]
 gi|238032670|emb|CAY70693.1| RNA helicase in the DEAD-box family, necessary for prespliceosome
           formation [Pichia pastoris GS115]
 gi|328353117|emb|CCA39515.1| ATP-dependent RNA helicase DDX46/PRP5 [Pichia pastoris CBS 7435]
          Length = 784

 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 2/107 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V  +  A+ L   L +R    + +H   + ++R  II+D + G  D+LV  ++  
Sbjct: 467 KVLVFVERQDSADVLLTNLLKRGYNAQSLHGGKEQMDRDFIIQDFKTGNSDILVATSVAA 526

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            GLD+    LV  ++ D    +      +   GRA     +   L A
Sbjct: 527 RGLDVKRLNLV--INYDSPNHMEDYVHRVGRTGRAGSTGEAVTFLTA 571


>gi|213406229|ref|XP_002173886.1| ATP-dependent 3' to 5' DNA helicase [Schizosaccharomyces japonicus
           yFS275]
 gi|212001933|gb|EEB07593.1| ATP-dependent 3' to 5' DNA helicase [Schizosaccharomyces japonicus
           yFS275]
          Length = 812

 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI++  R G  + L+  ++  EGLDI +  ++   D        S   ++Q IGR  R  
Sbjct: 546 EILQRYRSGLINTLIATSIGEEGLDIQDTDMIICYDVSS-----SPIRMLQRIGRTGRKR 600

Query: 683 N--SKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           N  + + L  +      Q A D + RR +KQLE  KK
Sbjct: 601 NGLAYIFLTQNCEDNKWQRAKD-SYRRVQKQLESGKK 636


>gi|195342874|ref|XP_002038023.1| GM18587 [Drosophila sechellia]
 gi|195576880|ref|XP_002078301.1| GD23375 [Drosophila simulans]
 gi|194132873|gb|EDW54441.1| GM18587 [Drosophila sechellia]
 gi|194190310|gb|EDX03886.1| GD23375 [Drosophila simulans]
          Length = 403

 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++        ++   T+R  + LT+ +   N  V  MH +++  +R  I++  R
Sbjct: 262 DLYDTLSITQS-----VIFCNTRRKVDQLTQEMSLHNFTVSAMHGDMEQRDREVIMKQFR 316

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 317 SGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 354


>gi|148553145|ref|YP_001260727.1| primosome assembly protein PriA [Sphingomonas wittichii RW1]
 gi|148498335|gb|ABQ66589.1| primosomal protein N' [Sphingomonas wittichii RW1]
          Length = 734

 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD---KEGFLRSK----TSLIQTI 675
           E +  +  G  DV+VG  L+ +G   PE  LV ++DAD     G LR+       + Q  
Sbjct: 531 EFVERMEAGDIDVVVGTQLVTKGYHFPELTLVGVIDADLGLSGGDLRAAERSFQQIAQVA 590

Query: 676 GRAARNVN 683
           GRA R   
Sbjct: 591 GRAGRGAK 598


>gi|50122209|ref|YP_051376.1| ATP-dependent RNA helicase SrmB [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612735|emb|CAG76185.1| ATP-dependent RNA helicase [Pectobacterium atrosepticum SCRI1043]
          Length = 441

 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L  +L+E  I   Y+  E+   +R E I+ +  G+ +VLV  ++  
Sbjct: 250 RSIIFVRKRERVHELVSWLHEAGINSCYLEGEMVQAKRNEAIKRMSDGRVNVLVATDIAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D       R+  + +  IGR  R
Sbjct: 310 RGIDIDDVSHVFNFD-----LPRTADTYLHRIGRTGR 341


>gi|307133003|ref|YP_003885019.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306530532|gb|ADN00463.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 428

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   ED+  +L     RV  +  +V   +R+ I+ D   G  D+LV  ++  
Sbjct: 258 RCIIFANTKHRCEDIWGHLASDGHRVGLLTGDVAQKKRLRILEDFTQGNLDILVATDVAA 317

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            GL IP    V   D   D E +       +  IGR  R   S           SI LA 
Sbjct: 318 RGLHIPAVTHVFNYDLPDDCEDY-------VHRIGRTGRAGASGC---------SISLAC 361

Query: 702 DE 703
           +E
Sbjct: 362 EE 363


>gi|296201956|ref|XP_002748362.1| PREDICTED: probable ATP-dependent RNA helicase DDX52 [Callithrix
           jacchus]
          Length = 575

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  E   E +YE  I V  +H+E    +R   +   R GK  VL+   LL  G+D     
Sbjct: 424 RAKELFHELIYE-GINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVN 482

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           LV   D     F  S    I  IGR  R  N
Sbjct: 483 LVINYD-----FPTSSVEYIHRIGRTGRAGN 508


>gi|168038086|ref|XP_001771533.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677260|gb|EDQ63733.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 684

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 6/101 (5%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           + G +I++   TKRM + L+  L  R+     +H +    ER  ++   R G+  +LV  
Sbjct: 393 EPGSKIIIFCSTKRMCDTLSRNL-GRDFGAAAIHGDKSQSERDFVLSQFRTGRTPILVAT 451

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++   GLDI +  +V   D     F       +  IGR  R
Sbjct: 452 DVAARGLDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGR 487


>gi|110638284|ref|YP_678493.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280965|gb|ABG59151.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 388

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A+ + E L   NI    +HS+     R E ++  + G   VLV  +L+  G+DIP    V
Sbjct: 265 ADAVVEKLKANNILAAALHSKKSQGARTEALKQFKAGNIHVLVATDLMSRGIDIPFLPFV 324

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              +       RS    I  IGR  R   S V
Sbjct: 325 INYELP-----RSPKDYIHRIGRTGRAEASGV 351


>gi|312136597|ref|YP_004003934.1| valyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
 gi|311224316|gb|ADP77172.1| valyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
          Length = 876

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
           EGL I EC    I D DK+GFL  K  + Q +GR  R      IL    + K   + +++
Sbjct: 305 EGLSIEECRNKIIEDLDKKGFLIKKERIKQNVGRCWRCKTPVEIL----VKKQWFIDVNK 360

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
             +  +K +   K H   P+ +K +++  ID
Sbjct: 361 LKKDVKKTINEIKWH---PEHMKTRLLNWID 388


>gi|293402242|ref|ZP_06646380.1| ATP-dependent DNA helicase RecG [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304349|gb|EFE45600.1| ATP-dependent DNA helicase RecG [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 669

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGLD 647
           +L K+   +L +  ++  I+V  +++ +KT E+ +I+  L   + D+LVG + L +EG++
Sbjct: 307 ILAKQHGNNLKKIFHDYEIQVEVLYASLKTQEKKDILERLARNEIDILVGTHALFQEGVE 366

Query: 648 IPECGLVAILDADKEGFLRSKTSL 671
             + G+V   +  + G  + K  L
Sbjct: 367 FHDLGMVVADEQHRFGVAQRKKML 390


>gi|251787806|ref|YP_003002527.1| ATP-dependent RNA helicase RhlB [Dickeya zeae Ech1591]
 gi|247536427|gb|ACT05048.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 428

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   ED+  +L     RV  +  +V   +R+ I+ D   G  D+LV  ++  
Sbjct: 258 RCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTQGNLDILVATDVAA 317

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            GL IP    V   D   D E +       +  IGR  R   S           SI LA 
Sbjct: 318 RGLHIPSVTHVFNYDLPDDCEDY-------VHRIGRTGRAGASGC---------SISLAC 361

Query: 702 DE 703
           +E
Sbjct: 362 EE 363


>gi|254482756|ref|ZP_05095994.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2148]
 gi|214037115|gb|EEB77784.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2148]
          Length = 688

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++ V  +H  +K  E+  ++   + GK D+LV   ++  G+D+P   L+ I + ++ G  
Sbjct: 512 DLAVGLVHGRLKPTEKDLVMAAFKAGKIDLLVATTVIEVGVDVPNASLMIIENPERLGL- 570

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTIT 694
                L Q  GR  R   +   V+LY   ++
Sbjct: 571 ---AQLHQLRGRVGRGTAASHCVLLYQSPLS 598


>gi|219685305|ref|ZP_03540124.1| primosomal protein N' [Borrelia garinii Far04]
 gi|219673078|gb|EED30098.1| primosomal protein N' [Borrelia garinii Far04]
          Length = 662

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N ++  + S++  +E I+ I      + D+L+G  ++ +G +      + I++AD    L
Sbjct: 440 NAKIARIDSDITKIENIDSISKFENKEIDILIGTQIIAKGFNFENIKTLGIINADTGIGL 499

Query: 666 -------RSKTSLIQTIGRAARNVNSKVIL 688
                  R  T+L Q +GRAAR  N   I+
Sbjct: 500 PDFRSSERIFTTLSQIMGRAARFKNDNTII 529


>gi|195552710|ref|XP_002076525.1| GD17585 [Drosophila simulans]
 gi|194202136|gb|EDX15712.1| GD17585 [Drosophila simulans]
          Length = 786

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 2/104 (1%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V  K  AE ++  L  +      +H ++   +R ++I   +  + D+LV  ++   
Sbjct: 514 VLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAAR 573

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GLDIP    V   D  ++  + + T  I   GRA    N+  ++
Sbjct: 574 GLDIPHIRNVVNYDTARD--IETHTHRIGRTGRAGEKGNAFTLV 615


>gi|148380465|ref|YP_001255006.1| primosomal protein N' [Clostridium botulinum A str. ATCC 3502]
 gi|148289949|emb|CAL84062.1| putative primosomal protein n'(replication factor Y) [Clostridium
           botulinum A str. ATCC 3502]
          Length = 735

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 10/111 (9%)

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169
           + S N L+K+G  +   ++  +N +++ I  +    +   +GDQ  A+ ++L   +S  K
Sbjct: 166 LSSINTLIKHG--FLIQKNQVVNRYNEKI--YGNYEEKILNGDQSLALYRIL---NSNRK 218

Query: 170 VQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFF 217
           + L+ GVTGSGKT     +++ +    + +I++ P   L  Q+   FK  F
Sbjct: 219 LFLIHGVTGSGKTEIYMHLVKKLIEKDKDSIILVPEISLTPQMVERFKGRF 269


>gi|56419705|ref|YP_147023.1| primosome assembly protein PriA [Geobacillus kaustophilus HTA426]
 gi|56379547|dbj|BAD75455.1| primosomal replication factor Y (primosomal protein N')
           [Geobacillus kaustophilus HTA426]
          Length = 801

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 153 QPAAIAQLLKGIHSRE-KVQLLLGVTGSGKT-FTMAKVIEAMQ--RPAIVMAPNKILAAQ 208
           Q AA+A++   + + E +  LL GVTGSGKT   M  + EA++  + AIV+ P   L  Q
Sbjct: 268 QEAALAKIAASVRAGEHRTFLLYGVTGSGKTEVYMQAIDEALRQGKEAIVLVPEISLTPQ 327

Query: 209 LYSEFKNFF 217
           +   FK+ F
Sbjct: 328 MVERFKSRF 336


>gi|7023040|dbj|BAA91812.1| unnamed protein product [Homo sapiens]
          Length = 491

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  E   E +YE  I V  +H+E    +R   +   R GK  VL+   LL  G+D     
Sbjct: 316 RAKELFHELIYE-GINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVN 374

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           LV   D     F  S    I  IGR  R  N
Sbjct: 375 LVINYD-----FPTSSVEYIHRIGRTGRAGN 400


>gi|315634772|ref|ZP_07890054.1| transcription-repair coupling factor [Aggregatibacter segnis ATCC
           33393]
 gi|315476324|gb|EFU67074.1| transcription-repair coupling factor [Aggregatibacter segnis ATCC
           33393]
          Length = 1149

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 102/244 (41%), Gaps = 23/244 (9%)

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM-IV 295
           + P  +T      S ++ I   R SA   L +R   I +  ++ +       SY Q  ++
Sbjct: 70  FFPDWETLPYDSFSPHQDIISARLSALFHLQQRKQGIFILPIATLMQRVCPPSYLQHRVL 129

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +  GD    + L   L K  Y+  +  +  G + V G  +++FP     V +R+  F +
Sbjct: 130 LINKGDRFVIETLRLQLEKSGYRAVEQVLEHGEYAVRGALLDLFPMG-SAVPFRLDFFDD 188

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F   T + ++ ++ I +     +    PT N  +++ + + +    E+ ++  
Sbjct: 189 EIDSIRIFDVDTQRTLQEIDQINLLPAHEF----PTDNQGIEFFRSQFRAAFGEIRRD-- 242

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
               + + Q+I+         G+  +   Y + L      E   TLF+Y P ++L    E
Sbjct: 243 ---PEHIYQQIS--------KGTLAAGIEYWQPLFF----EKMATLFDYFPANTLFITGE 287

Query: 476 SHVT 479
            + T
Sbjct: 288 QNQT 291


>gi|330923439|ref|XP_003300242.1| hypothetical protein PTT_11425 [Pyrenophora teres f. teres 0-1]
 gi|311325733|gb|EFQ91667.1| hypothetical protein PTT_11425 [Pyrenophora teres f. teres 0-1]
          Length = 606

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 3/98 (3%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+   +K   + + ++LY + + V  +HS+    ER + +R  R  +  +LV   +  
Sbjct: 386 RTLVFTNSKAKCDMVDDFLYNKALPVTSIHSDRTQREREDALRSFRTARCPILVATGVTA 445

Query: 644 EGLDIPECGLVAILDADKEGFLRSK-TSLIQTIGRAAR 680
            GLD+    +  +++ D    +    T  I  IGR AR
Sbjct: 446 RGLDV--ANIKHVINYDLPSTMHDGITEYIHRIGRTAR 481


>gi|307710364|ref|ZP_07646805.1| transcription-repair coupling factor [Streptococcus mitis SK564]
 gi|307618956|gb|EFN98091.1| transcription-repair coupling factor [Streptococcus mitis SK564]
          Length = 1169

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|260777273|ref|ZP_05886167.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606939|gb|EEX33213.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 641

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 38/199 (19%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT-----------IT 694
           LD+P   +  + + D    + S    I   GRA R    K IL   T           +T
Sbjct: 309 LDVPR--ITHVFNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQIRMLRTIERVT 364

Query: 695 KS----IQLAI-DETTRRR----EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN 745
           KS    IQL + D+    R      +LE  K+H    +S+ EK  E+++   L+DA    
Sbjct: 365 KSSMEEIQLPLRDKVAEARLVKLGAELEQEKEH----KSL-EKFGELVEK--LQDA---- 413

Query: 746 ISIDAQQLS---LSKKKGK 761
           + IDA  L+   L +++GK
Sbjct: 414 LEIDAATLAAILLKRQQGK 432


>gi|302345727|ref|YP_003814080.1| transcription-repair coupling factor [Prevotella melaninogenica
           ATCC 25845]
 gi|302150109|gb|ADK96371.1| transcription-repair coupling factor [Prevotella melaninogenica
           ATCC 25845]
          Length = 1178

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y  N R+   H ++K  E  EI+       +DVL+   ++  G+DI     + I DA + 
Sbjct: 845 YVPNCRIAIGHGQMKPEELEEIVMGFMNYDYDVLLSTTIVENGIDISNANTIIINDAHRF 904

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           G     + L Q  GR  R+ N K   Y   +      A++   RRR + LE
Sbjct: 905 GL----SDLHQMRGRVGRS-NKKAFCY---LLAPPLAALNPEARRRLEALE 947


>gi|225427683|ref|XP_002273691.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 797

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 4/96 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI-IRDLRLGKFDVLVGINLLRE 644
           ++ + TK+ A++L + L +   RV  +H   K+ E+ EI +   R  +++VLV  ++   
Sbjct: 559 IVFINTKKSADNLAKGLDKAGYRVTTLHGG-KSQEQREISLEGFRTKRYNVLVATDVAGR 617

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+DIP+  +  +++ D  G +   T  I   GRA +
Sbjct: 618 GIDIPD--VAHVINYDMPGNIEMYTHRIGRTGRAGK 651


>gi|193785511|dbj|BAG50877.1| unnamed protein product [Homo sapiens]
 gi|193786536|dbj|BAG51319.1| unnamed protein product [Homo sapiens]
          Length = 413

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R  E   E +YE  I V  +H+E    +R   +   R GK  VL+   LL  G+D    
Sbjct: 237 ERAKELFHELIYE-GINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGV 295

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            LV   D     F  S    I  IGR  R  N
Sbjct: 296 NLVINYD-----FPTSSVEYIHRIGRTGRAGN 322


>gi|167898423|ref|ZP_02485824.1| ATP-dependent DNA helicase [Burkholderia pseudomallei 7894]
          Length = 618

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612
           PPV +    A    E +YD I   A      L+ V T+RMAE    +L +R     +   
Sbjct: 256 PPVPLGPVMANDVWERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAH 315

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +
Sbjct: 316 HGSLAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFL 370

Query: 673 QTIGRAARNVNS 684
           Q +GR+  ++  
Sbjct: 371 QRVGRSGHHIGG 382


>gi|167588767|ref|ZP_02381155.1| DEAD/DEAH box helicase [Burkholderia ubonensis Bu]
          Length = 607

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSE 615
           P+E   A    E VYD I   A      L+ V T+R AE +  +L +R  +  +   H  
Sbjct: 272 PLEPVMATDVWEQVYDRIAGLAAAHRTTLVFVNTRRTAERMARHLADRLGKDAIAAHHGS 331

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R +  + L+ G+  +LV    L  G+DI +  LV      + G  R     +Q +
Sbjct: 332 LAKEHRFDAEQRLKRGELKLLVATASLELGIDIGDVDLVC-----QVGSPRGIAPFLQRV 386

Query: 676 GRAARNVNS 684
           GR+  +V  
Sbjct: 387 GRSGHHVGG 395


>gi|56972628|gb|AAH88581.1| ddx52-prov protein [Xenopus (Silurana) tropicalis]
          Length = 585

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  E   E +YE  I V  +H+E    +R  +I+  R GK  VL+   LL  G+D     
Sbjct: 430 RAKELFHELIYE-GINVDVIHAERTQQQRDNVIQSFREGKIWVLICTALLARGIDFKGVN 488

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +V   D     F  S    I  IGR  R
Sbjct: 489 MVINYD-----FPTSAVEYIHRIGRTGR 511


>gi|16765963|ref|NP_461578.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62181218|ref|YP_217635.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161612638|ref|YP_001586603.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167553669|ref|ZP_02347416.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994856|ref|ZP_02575946.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232171|ref|ZP_02657229.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238338|ref|ZP_02663396.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168245094|ref|ZP_02670026.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261356|ref|ZP_02683329.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168468057|ref|ZP_02701894.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168823169|ref|ZP_02835169.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444674|ref|YP_002041910.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451369|ref|YP_002046652.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194469312|ref|ZP_03075296.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736243|ref|YP_002115655.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197251182|ref|YP_002147547.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263960|ref|ZP_03164034.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198245924|ref|YP_002216658.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389167|ref|ZP_03215779.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929439|ref|ZP_03220513.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205353686|ref|YP_002227487.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857997|ref|YP_002244648.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224584498|ref|YP_002638296.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912708|ref|ZP_04656545.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16421193|gb|AAL21537.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62128851|gb|AAX66554.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161362002|gb|ABX65770.1| hypothetical protein SPAB_00333 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403337|gb|ACF63559.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409673|gb|ACF69892.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194455676|gb|EDX44515.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711745|gb|ACF90966.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195628861|gb|EDX48275.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197214885|gb|ACH52282.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197242215|gb|EDY24835.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288867|gb|EDY28240.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197940440|gb|ACH77773.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199606265|gb|EDZ04810.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321158|gb|EDZ06358.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273467|emb|CAR38444.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205321947|gb|EDZ09786.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327350|gb|EDZ14114.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333649|gb|EDZ20413.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336132|gb|EDZ22896.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205340544|gb|EDZ27308.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349536|gb|EDZ36167.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709800|emb|CAR34152.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224469025|gb|ACN46855.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261247841|emb|CBG25670.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994784|gb|ACY89669.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159194|emb|CBW18709.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913637|dbj|BAJ37611.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085536|emb|CBY95315.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225998|gb|EFX51051.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613360|gb|EFY10302.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620436|gb|EFY17301.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625096|gb|EFY21925.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629460|gb|EFY26236.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633847|gb|EFY30586.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635453|gb|EFY32164.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639871|gb|EFY36550.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644243|gb|EFY40787.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649935|gb|EFY46355.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654882|gb|EFY51199.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658190|gb|EFY54456.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322661738|gb|EFY57956.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669719|gb|EFY65865.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673274|gb|EFY69379.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322674937|gb|EFY71024.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682960|gb|EFY78978.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685621|gb|EFY81616.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715706|gb|EFZ07277.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323130981|gb|ADX18411.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323191951|gb|EFZ77189.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200416|gb|EFZ85497.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201315|gb|EFZ86382.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208386|gb|EFZ93326.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211538|gb|EFZ96376.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215970|gb|EGA00702.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221751|gb|EGA06159.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225641|gb|EGA09868.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229359|gb|EGA13483.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235326|gb|EGA19410.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237488|gb|EGA21551.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245243|gb|EGA29244.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246468|gb|EGA30449.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254001|gb|EGA37823.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259051|gb|EGA42699.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261974|gb|EGA45539.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267757|gb|EGA51238.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269684|gb|EGA53136.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624414|gb|EGE30759.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326628791|gb|EGE35134.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332989572|gb|AEF08555.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 444

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +VLV  ++  
Sbjct: 250 RSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DIP+   V   D       RS  + +  IGR  R
Sbjct: 310 RGIDIPDVSHVINFD-----MPRSGDTYLHRIGRTGR 341


>gi|124025758|ref|YP_001014874.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           str. NATL1A]
 gi|123960826|gb|ABM75609.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
           str. NATL1A]
          Length = 1167

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
           + N  I+ +  S    +   E   +  ++L +GD +   +L   L +  Y + +     G
Sbjct: 116 DENIAIIATERSLQPHLPPFEYLKEKCIKLNVGDEINLSDLSLKLSESGYIKSNNIDQEG 175

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           T+   GD I+I+P   E +  R+ +FG+ +++I EF P++ + +  +  + I
Sbjct: 176 TWTRRGDIIDIYPVSSE-LPIRLELFGDLLDKIKEFDPISQRSLDQINNVCI 226


>gi|119578005|gb|EAW57601.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52, isoform CRA_c [Homo
           sapiens]
          Length = 491

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  E   E +YE  I V  +H+E    +R   +   R GK  VL+   LL  G+D     
Sbjct: 316 RAKELFHELIYE-GINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVN 374

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           LV   D     F  S    I  IGR  R  N
Sbjct: 375 LVINYD-----FPTSSVEYIHRIGRTGRAGN 400


>gi|30248039|ref|NP_840109.1| mfd: transcription-repair coupling factor [Nitrosomonas europaea
           ATCC 19718]
 gi|30179924|emb|CAD83919.1| mfd: transcription-repair coupling factor [Nitrosomonas europaea
           ATCC 19718]
          Length = 1154

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+   H +++  E   ++RD    +F++L+   ++  G+DIP    + I  ADK G    
Sbjct: 847 RINIAHGQMRESELEHVMRDFYQQRFNLLLCTTIIETGIDIPTANTIIIHRADKFGL--- 903

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAI-DETTRRRE 709
              L Q  GR  R+ +     YA  +T   + A+  + TRR E
Sbjct: 904 -AQLHQLRGRVGRSHHQA---YAYLLTPPEKAALTTQATRRLE 942


>gi|307195788|gb|EFN77602.1| Endoribonuclease Dcr-1 [Harpegnathos saltator]
          Length = 1807

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 24/138 (17%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           +T  E  Y  +N+ A   ++I       R  +D+    Y R++ + +   E       E+
Sbjct: 310 KTPYERHYLLLNMVASVFIKI-------RTTDDVG---YSRDLEMEHRKQE-------EV 352

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           ++  R+ + ++L+  ++L EG+DIP+C  V   D     F ++  S +Q   RA      
Sbjct: 353 LKRFRIHECNLLIATSILEEGIDIPKCNFVMRYD-----FPKNYQSYVQCKSRARAIDAL 407

Query: 685 KVILYADTITKSI--QLA 700
            V+L    I+K +  QLA
Sbjct: 408 HVLLVPQKISKELIWQLA 425


>gi|297530655|ref|YP_003671930.1| primosomal protein N' [Geobacillus sp. C56-T3]
 gi|297253907|gb|ADI27353.1| primosomal protein N' [Geobacillus sp. C56-T3]
          Length = 801

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 153 QPAAIAQLLKGIHSRE-KVQLLLGVTGSGKT-FTMAKVIEAMQ--RPAIVMAPNKILAAQ 208
           Q AA+A++   + + E +  LL GVTGSGKT   M  + EA++  + AIV+ P   L  Q
Sbjct: 268 QEAALAKIAASVRAGEHRTFLLYGVTGSGKTEVYMQAIDEALRQGKEAIVLVPEISLTPQ 327

Query: 209 LYSEFKNFF 217
           +   FK+ F
Sbjct: 328 MVERFKSRF 336


>gi|269104706|ref|ZP_06157402.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161346|gb|EEZ39843.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 647

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVEHIKRGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 309 LDVPR--ITHVFNYDIPFDVESYIHRIGRTGRAGR--EGKAILLVRTNQIRMLRTIERVT 364

Query: 706 RRREKQLE 713
           + R ++++
Sbjct: 365 KSRMEEIQ 372


>gi|224090572|ref|XP_002187022.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Taeniopygia
           guttata]
          Length = 492

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TK+ A+ +  +L + NI    +H + +  ER   + D R G+  VLV  ++  
Sbjct: 321 RTLVFVDTKKKADFIACFLCQENIPATSIHGDREQREREIALGDFRSGRRPVLVATSVAA 380

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI     V   D        +    +  IGR  R  N+ K + + D
Sbjct: 381 RGLDIENVQHVINFD-----LPSTIEEYVHRIGRTGRCGNTGKAVAFFD 424


>gi|213405989|ref|XP_002173766.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001813|gb|EEB07473.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces japonicus
           yFS275]
          Length = 1056

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 14/130 (10%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q  +R L+ V     A+ L   L +R      +H      +R   I D ++G FDVL+  
Sbjct: 707 QPDVRTLVFVDRHESADALLSQLMKRGYSCNSIHGGKDQHDRDSTISDYKMGIFDVLIAT 766

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL---------YA 690
           ++   GLD+    LV   D             +  +GR  R  ++ V +         YA
Sbjct: 767 SVAARGLDVKSLQLVVNYDCPNH-----MEDYVHRVGRTGRAGHTGVAVTFVTPDQSRYA 821

Query: 691 DTITKSIQLA 700
             I K+++++
Sbjct: 822 VGIAKALKMS 831


>gi|195326619|ref|XP_002030023.1| GM24798 [Drosophila sechellia]
 gi|194118966|gb|EDW41009.1| GM24798 [Drosophila sechellia]
          Length = 786

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 2/104 (1%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V  K  AE ++  L  +      +H ++   +R ++I   +  + D+LV  ++   
Sbjct: 514 VLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAAR 573

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GLDIP    V   D  ++  + + T  I   GRA    N+  ++
Sbjct: 574 GLDIPHIRNVVNYDTARD--IETHTHRIGRTGRAGEKGNAFTLV 615


>gi|182415515|ref|YP_001820581.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177842729|gb|ACB76981.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
          Length = 594

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 13/140 (9%)

Query: 567 QVEDVYDEINLAAQ-QGLRILLTV----------LTKRMAEDLTEYLYERNIRVRYMHSE 615
           QVE +Y E++  ++ + L  L+ V           TK M +DL E+L+ R   V  +H +
Sbjct: 217 QVEQIYFEVDRRSKLEALTRLIDVHDFRYGIVFCSTKVMVDDLDEHLHARGYAVDRLHGD 276

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +   +R  ++   R   F+ L+  ++   GLD+ +  L  + + D        T  I   
Sbjct: 277 LSQTQRDRVMDKFRRRGFEFLIATDVAARGLDVDD--LEVVFNYDLPNDAEDYTHRIGRT 334

Query: 676 GRAARNVNSKVILYADTITK 695
           GRA ++  +   +    I K
Sbjct: 335 GRAGKSGRAFTFVSGQEIYK 354


>gi|89075823|ref|ZP_01162207.1| putative transcription-repair coupling factor [Photobacterium sp.
           SKA34]
 gi|89048444|gb|EAR54020.1| putative transcription-repair coupling factor [Photobacterium sp.
           SKA34]
          Length = 1153

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 57/296 (19%), Positives = 121/296 (40%), Gaps = 36/296 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+    + A+V  + + P + + P+   A +L  E   F      +  V+ +  ++  
Sbjct: 24  IKGAALALSFAEVAASHKGPVLAVVPDTQTALKLQPEITQF-----CDVEVNVFPDWETL 78

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            Y    D +   +  I+E++ R+    +    +++  I+V   + +      E   Q  +
Sbjct: 79  PY----DNFSPHQDIISERLARLYKMPS----QKSGIILVPISTLLQRQTPREFIHQHAL 130

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD +  ++L   L    Y+  D  +  G +   G  +++FP   +   +R+  F +
Sbjct: 131 IVKAGDRMSLEKLRLQLEVSGYRHVDQVMEHGEYASRGSLLDLFPMGSQS-PYRIDFFDD 189

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +++ I +F P   +    +++I +     +    PT   A+    E  +MR  E      
Sbjct: 190 EVDSIRQFDPDNQRSTGEIDSIDLLPAHEF----PTDEIAV----ENFRMRWRE------ 235

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             EA+R  + I    + +        IE +      +       TLF+Y+P+ SLL
Sbjct: 236 RFEARREPESI---YQQVSKRTWPAGIEYWQPLFFDKT-----ETLFDYLPDTSLL 283


>gi|88861118|ref|ZP_01135752.1| ATP-dependent DNA helicase recG [Pseudoalteromonas tunicata D2]
 gi|88816840|gb|EAR26661.1| ATP-dependent DNA helicase recG [Pseudoalteromonas tunicata D2]
          Length = 694

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 6/87 (6%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A++LT  L E  +++  +H  +K  E+  I+   + G+ +VLV   ++  G+D+P   L+
Sbjct: 509 AKELTVLLPE--LKIGLVHGRMKPAEKQAIMEQFKQGEINVLVATTVIEVGVDVPNASLI 566

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARN 681
            I + ++ G       L Q  GR  R 
Sbjct: 567 IIENPERLGL----AQLHQLRGRVGRG 589


>gi|71666325|ref|XP_820123.1| eukaryotic initiation factor 4a [Trypanosoma cruzi strain CL
           Brener]
 gi|70885454|gb|EAN98272.1| eukaryotic initiation factor 4a, putative [Trypanosoma cruzi]
          Length = 438

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y+ +++A       ++   T+R  + L + L + N  V  MHSE+   +R +++   R
Sbjct: 295 DLYETVSIAQS-----VIFANTRRKVDWLAQQLNQSNHTVSCMHSEMPKQDREKVMSTFR 349

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VLV  +L+  G+D+    +V   D   +KE +L
Sbjct: 350 NGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKESYL 387


>gi|269958653|ref|YP_003328440.1| primosomal protein N' [Anaplasma centrale str. Israel]
 gi|269848482|gb|ACZ49126.1| primosomal protein N' [Anaplasma centrale str. Israel]
          Length = 662

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V  +R+AE + E + E N+ +  + S+V T      I  +  G+ +++VG  ++ +G + 
Sbjct: 429 VGVERVAEGIKELIPEANVAI--ISSDVNTKRITRTIEQIMEGEVNIIVGTQIIAKGHNF 486

Query: 649 PECGLVAILDAD 660
           P+  LV ++DAD
Sbjct: 487 PKLTLVGVIDAD 498


>gi|193632062|ref|XP_001950933.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like
           [Acyrthosiphon pisum]
          Length = 528

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ + +K  A++L   L    I V  +H++    +R   ++  R GK  VL+   L+  
Sbjct: 303 VLIFLQSKERAKELFSELIYDGINVDAIHADRTQQQRDNTVKAFREGKIWVLICTELMGR 362

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D     LV   D     F  S  S I  IGR  R
Sbjct: 363 GIDFKGVNLVVNYD-----FPSSAISYIHRIGRTGR 393


>gi|167723846|ref|ZP_02407082.1| ATP-dependent DNA helicase [Burkholderia pseudomallei DM98]
          Length = 488

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612
           PPV +    A    E +YD I   A      L+ V T+RMAE    +L +R     +   
Sbjct: 256 PPVPLGPVMANDVWERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAH 315

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +
Sbjct: 316 HGSLAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFL 370

Query: 673 QTIGRAARNVNS 684
           Q +GR+  ++  
Sbjct: 371 QRVGRSGHHIGG 382


>gi|157961369|ref|YP_001501403.1| transcription-repair coupling factor [Shewanella pealeana ATCC
           700345]
 gi|157846369|gb|ABV86868.1| transcription-repair coupling factor [Shewanella pealeana ATCC
           700345]
          Length = 1157

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 58/311 (18%), Positives = 119/311 (38%), Gaps = 36/311 (11%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            + S +  Q L  + G+ +  T+A + +      +V+  +   A  L +E        ++
Sbjct: 11  AVKSAKLAQTLCTLGGAAQALTIANIAKQHLGVTLVVTADTPNAISLETELSYLLSEQSI 70

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                      P    P  +T      S ++ +   R  A   + +    +V+  ++ + 
Sbjct: 71  -----------PIWLFPDRETLPYDSFSPHQDLVSQRLEALSRIPQAQHAVVIVPITTLM 119

Query: 283 GIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                +S+ +  ++ L+ GD     ++   L+   Y   +     G F V G  I+IFP 
Sbjct: 120 VRLPPQSFLTGNVLMLEKGDKYRLMDVREQLINTGYHVVEQVYEHGEFAVRGSIIDIFPM 179

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
                 +R+ +F +++E I  F P T +  + +  I++     +    PT + A++  ++
Sbjct: 180 G-SSQPFRIELFDDEVETIRHFDPETQRSSKEINAIRLLPAKEF----PTDDAAIEGFRQ 234

Query: 402 ELKMRLIELEKE-GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
             + R   L KE G +              +M+        IENY              T
Sbjct: 235 RYRRRFEVLVKEPGSI-------------YQMVSKKTMPAGIENYLPLFFDET-----ST 276

Query: 461 LFEYIPEDSLL 471
           LF+Y+P ++ L
Sbjct: 277 LFDYLPSNTQL 287


>gi|72549287|ref|XP_843509.1| ATP-dependent RNA helicase [Leishmania major strain Friedlin]
 gi|323364026|emb|CBZ13032.1| putative ATP-dependent RNA helicase [Leishmania major strain
           Friedlin]
          Length = 690

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 10/109 (9%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-----VRYMHSEVKTLERIEIIRDLRLG 631
           LA+ +G ++L+ V+T    E L E L    ++     V  +H ++K  +R ++ R +   
Sbjct: 272 LASHRGEKVLVYVMTCASVEWLYEALSAVLLKDEADSVFALHGQMKLEKRQQVHRQVTRR 331

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              VLV  ++   GLDIPE G+V   D   +       + I  IGR AR
Sbjct: 332 SRCVLVCTDVAARGLDIPEVGVVVQYDPPVD-----PNTFIHRIGRTAR 375


>gi|17136248|ref|NP_476595.1| eukaryotic initiation factor 4a, isoform C [Drosophila
           melanogaster]
 gi|24582075|ref|NP_723137.1| eukaryotic initiation factor 4a, isoform A [Drosophila
           melanogaster]
 gi|24582078|ref|NP_723138.1| eukaryotic initiation factor 4a, isoform B [Drosophila
           melanogaster]
 gi|24582080|ref|NP_723139.1| eukaryotic initiation factor 4a, isoform D [Drosophila
           melanogaster]
 gi|12644381|sp|Q02748|IF4A_DROME RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
 gi|5052532|gb|AAD38596.1|AF145621_1 eukaryotic initiation factor-4a [Drosophila melanogaster]
 gi|17861902|gb|AAL39428.1| GM14109p [Drosophila melanogaster]
 gi|21464294|gb|AAM51950.1| GH17619p [Drosophila melanogaster]
 gi|22945717|gb|AAF52317.2| eukaryotic initiation factor 4a, isoform A [Drosophila
           melanogaster]
 gi|22945718|gb|AAN10566.1| eukaryotic initiation factor 4a, isoform C [Drosophila
           melanogaster]
 gi|22945719|gb|AAN10567.1| eukaryotic initiation factor 4a, isoform B [Drosophila
           melanogaster]
 gi|22945720|gb|AAN10568.1| eukaryotic initiation factor 4a, isoform D [Drosophila
           melanogaster]
 gi|260166767|gb|ACX32995.1| LD22268p [Drosophila melanogaster]
          Length = 403

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++        ++   T+R  + LT+ +   N  V  MH +++  +R  I++  R
Sbjct: 262 DLYDTLSITQS-----VIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFR 316

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 317 SGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 354


>gi|320582192|gb|EFW96410.1| ATP-dependent RNA helicase, putative [Pichia angusta DL-1]
          Length = 428

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE L   L    +    +HSE+   ER   +   R G   VLV  +L   GLDIP   LV
Sbjct: 266 AEILRRLLRHLEVTTTSLHSEMPQSERTNSLHRFRAGAARVLVATDLASRGLDIPSVELV 325

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR 680
              D       R     +  +GR AR
Sbjct: 326 INFD-----IPRDPDDYVHRVGRTAR 346


>gi|312220673|emb|CBY00614.1| similar to ATP-dependent RNA helicase dbp8 [Leptosphaeria maculans]
          Length = 505

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV  +HS +K  +R+  +   R     +LV  ++   GLDIPE GLV   D       R 
Sbjct: 355 RVTALHSGLKQSDRVGNLARFRAQAARILVATDVAARGLDIPEVGLVINYDVP-----RD 409

Query: 668 KTSLIQTIGRAAR 680
               I  +GR AR
Sbjct: 410 PDDYIHRVGRTAR 422


>gi|302895429|ref|XP_003046595.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256727522|gb|EEU40882.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 897

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I+ T  TK   E L   L E    V Y++  +  + R   + D R GK ++LV  ++   
Sbjct: 362 IIFTA-TKHHVEYLANLLIEAGFAVSYVYGSLDQVARRMQVEDFRRGKTNILVVTDVAAR 420

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+DIP    V   D     F       +  +GR AR
Sbjct: 421 GIDIPVLANVINFD-----FPPQPKVFVHRVGRTAR 451


>gi|254670469|emb|CBA06145.1| transcription-repair coupling factor [Neisseria meningitidis
            alpha153]
          Length = 1286

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 608  RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            R+   H +++  E  +++RD    +F+VL+   ++  G+DIP    + I  ADK G  + 
Sbjct: 977  RIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQ- 1035

Query: 668  KTSLIQTIGRAARNVNS--KVILYADTITKSIQLAID 702
               L Q  GR  R+ +     +L  + ITK  +  +D
Sbjct: 1036 ---LHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLD 1069



 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
           D + V   + +  +  V   +     LK G +++   L + LV   Y      +  G F 
Sbjct: 10  DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVAAGEFA 69

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  I++     +    P
Sbjct: 70  VRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTISPVSEIRLLPAHEF----P 124

Query: 391 TLNTAMKYIKEELK 404
           T + A K  +   +
Sbjct: 125 TDSEAQKIFRSRFR 138


>gi|219683483|ref|YP_002469866.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|219621133|gb|ACL29290.1| possible ATP-dependent RNA helicase [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|289178816|gb|ADC86062.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 658

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 6/112 (5%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           LA+ +G RIL T  TK  A+ L   L +  I    +H  +   +R   ++    G+ +VL
Sbjct: 288 LASGRGRRILFT-RTKFQAKKLAHTLTQSGIPAAELHGNLSQHQRDRNLQVFESGQVNVL 346

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  ++   G+D+   GLV  ++  ++       S     GR AR   S  ++
Sbjct: 347 VATDVAARGIDVSNVGLVVQVEPPED-----PKSFTHRSGRTARAGQSGDVV 393


>gi|188995578|ref|YP_001929830.1| transcription-repair coupling factor [Porphyromonas gingivalis ATCC
           33277]
 gi|188595258|dbj|BAG34233.1| transcription-repair coupling factor [Porphyromonas gingivalis ATCC
           33277]
          Length = 1122

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 18/210 (8%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
            +  L+K +  REK   L G+ GS     + K++    RP + +A +   A  L+S+ + 
Sbjct: 19  GVQALMKAL-DREKYVALDGLCGSSAAL-IVKLLHESGRPVLCIASDMEEAGYLFSDLEQ 76

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
                +  +F S Y          R   Y   +++  +Q+  +R  A  +L     C +V
Sbjct: 77  LGGEGSALFFPSSY---------KRAIKYGHTDAA--QQV--LRAEALAALSMEGSCPLV 123

Query: 276 SSV--SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
            S   +    + + +   + +  ++ GD +++  L   L++  ++R D     G F V G
Sbjct: 124 VSYPEAVAERVVAGDILEKEMHSIRQGDRLDRDFLRDLLLEWGFERTDYVYEPGQFAVRG 183

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
             +++F S   ++  R+  F ++IE I  F
Sbjct: 184 SLLDVF-SFSRELPVRIDFFDDEIESIRLF 212



 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           + RV   H  +   E   +I D    ++DVLV   ++  G+D+P    + I DA + G  
Sbjct: 790 DARVAVGHGRMSPTELERLILDFVHYEYDVLVATTIIENGIDVPNANTIIIDDAHRYGL- 848

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
              + L Q  GR  R+ N K   Y  +   S+   + + +RRR + +E+
Sbjct: 849 ---SELHQLRGRVGRS-NRKAFCYLLSPPLSV---LSDDSRRRLQAIEN 890


>gi|39972035|ref|XP_367408.1| hypothetical protein MGG_07333 [Magnaporthe oryzae 70-15]
 gi|152013486|sp|A4RIF1|DBP5_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP5
 gi|145019844|gb|EDK04072.1| hypothetical protein MGG_07333 [Magnaporthe oryzae 70-15]
          Length = 504

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 39/78 (50%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+  A+++   +     +V  +H   +  ER +++ D R GK  VL+  N+L  G
Sbjct: 340 VIFVKTRESADEIQRRMEADGHKVSALHGAFQGQERDQLLDDFRSGKSKVLITTNVLARG 399

Query: 646 LDIPECGLVAILDADKEG 663
           +D+    +V   D   +G
Sbjct: 400 IDVSSVSMVINYDIPMKG 417


>gi|297844170|ref|XP_002889966.1| EMB1586 [Arabidopsis lyrata subsp. lyrata]
 gi|297335808|gb|EFH66225.1| EMB1586 [Arabidopsis lyrata subsp. lyrata]
          Length = 551

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 33/66 (50%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  +D+   L  R +    MH ++  L R  +++  + G+  VLV   L   GLD+ EC 
Sbjct: 418 RQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECD 477

Query: 653 LVAILD 658
           LV  L+
Sbjct: 478 LVVNLE 483


>gi|291405635|ref|XP_002719293.1| PREDICTED: ATP-dependent RNA helicase ROK1 [Oryctolagus cuniculus]
          Length = 599

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +   A++L   L    I V  +H+E    +R   +   R GK  VL+   LL  
Sbjct: 415 VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLAR 474

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D     LV   D     F  S    I  IGR  R
Sbjct: 475 GIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGR 505


>gi|261820510|ref|YP_003258616.1| ATP-dependent RNA helicase SrmB [Pectobacterium wasabiae WPP163]
 gi|261604523|gb|ACX87009.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 441

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L  +L+E  I   Y+  E+   +R E I+ +  G+ +VLV  ++  
Sbjct: 250 RSIIFVRKRERVHELVSWLHEAGINSCYLEGEMVQAKRNEAIKRMSDGRVNVLVATDIAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D       R+  + +  IGR  R
Sbjct: 310 RGIDIDDVSHVFNFD-----LPRTADTYLHRIGRTGR 341


>gi|224135589|ref|XP_002322111.1| predicted protein [Populus trichocarpa]
 gi|222869107|gb|EEF06238.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 5/109 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI-IRDLRLGKFDVLVGINLLRE 644
           ++ V TK+ A+ + + L +   RV  +H   K+ E+ EI +   R  +++VLV  ++   
Sbjct: 557 IVFVNTKKNADMVAKNLDKHGYRVTTLHGG-KSQEQREISLEGFRTKRYNVLVATDVAGR 615

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADT 692
           G+DIP+  +  +++ D  G +   T  I   GRA +  V S  +   DT
Sbjct: 616 GIDIPD--VAHVINYDMPGNIEMYTHRIGRTGRAGKTGVASTFLTLGDT 662


>gi|160936218|ref|ZP_02083591.1| hypothetical protein CLOBOL_01114 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441028|gb|EDP18752.1| hypothetical protein CLOBOL_01114 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1405

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 13/146 (8%)

Query: 571 VYDEINLAAQQGLRILLTVLT----KRMAEDLTEY--LYERNIRVRYMHSEVKTLERIEI 624
           V++E+ +A  +      +V+     +R  E L  Y  L   +   R  H  +   +R E+
Sbjct: 264 VWEELGMAVYRQCLSCKSVIAFSEGRRYVEKLAYYVNLLGGDGFARVHHGSLSKEQRDEV 323

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN- 683
            RDLR G+  +L   + +  G+D+ +   V      + G  R+ +S +Q +GRA  N   
Sbjct: 324 ERDLREGRLRLLCATSSMELGIDVGDVEQVL-----QVGCPRTISSTMQRLGRAGHNPGR 378

Query: 684 -SKVILYADTITKSIQLAIDETTRRR 708
            S + +Y  T  +S+   +     RR
Sbjct: 379 VSVMYMYPRTAPESVYCGMTAQVARR 404


>gi|148703756|gb|EDL35703.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Mus
           musculus]
          Length = 321

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 92  DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 150

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 151 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 209

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 210 ---NITKDL 215


>gi|19387219|gb|AAL87140.1|AF479821_1 DEAD box RNA helicase Vasa [Hyphessobrycon ecuadoriensis]
          Length = 397

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 8/114 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R G+  VLV  ++  
Sbjct: 214 RTMVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALSDFRTGQCPVLVATSVAA 273

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK---VILYADTIT 694
            GLDI     V   D        +    +  IGR  R  N+       YA++ T
Sbjct: 274 RGLDIEHVQHVVNFD-----LPNNIEEYVHRIGRTGRCGNTGRAVSFFYAESDT 322


>gi|16761502|ref|NP_457119.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29140801|ref|NP_804143.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213420579|ref|ZP_03353645.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213425267|ref|ZP_03358017.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213585704|ref|ZP_03367530.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213616277|ref|ZP_03372103.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213646345|ref|ZP_03376398.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854910|ref|ZP_03383150.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25385254|pir||AD0830 ATP-dependent RNA helicase SrmB [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503802|emb|CAD02792.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136426|gb|AAO67992.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 444

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +VLV  ++  
Sbjct: 250 RSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DIP+   V   D       RS  + +  IGR  R
Sbjct: 310 RGIDIPDVSHVINFD-----MPRSGDTYLHRIGRTGR 341


>gi|262066432|ref|ZP_06026044.1| putative helicase [Fusobacterium periodonticum ATCC 33693]
 gi|291379859|gb|EFE87377.1| putative helicase [Fusobacterium periodonticum ATCC 33693]
          Length = 942

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           + L  L+ V     A+ L E   E+ ++   + SE    ER E I+ L  G+ + +V ++
Sbjct: 434 EKLHCLVFVSKVEEAKILVEKFLEQGLKALALSSENSDNEREEAIKKLEEGEIEYIVSVD 493

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTS---LIQTIGRAAR 680
           +  EG+DIP C    IL       LR  TS    IQ +GR  R
Sbjct: 494 IFNEGVDIP-CVNQVIL-------LRPTTSAIVYIQQLGRGLR 528


>gi|194014406|ref|ZP_03053023.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Bacillus pumilus ATCC 7061]
 gi|194013432|gb|EDW22997.1| primosomal protein N' (ATP-dependent helicase PriA)(Replication
           factor Y) [Bacillus pumilus ATCC 7061]
          Length = 802

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 15/102 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+R+ E+LT+ L E     R +  +V T  R     +++      + D+L+G  ++ +GL
Sbjct: 562 TQRVEEELTKVLPE----ARVIRMDVDTTSRKGAHEKLLTSFGNKEADILLGTQMIAKGL 617

Query: 647 DIPECGLVAILDADKE----GFLRSKTS---LIQTIGRAARN 681
           D P+  LV +L AD       F  S+ +   L Q  GRA R+
Sbjct: 618 DFPDVTLVGVLSADTSLHIPDFRSSEKTFQLLTQVSGRAGRH 659


>gi|254265067|ref|ZP_04955932.1| putative ATP-dependent helicase lhr [Burkholderia pseudomallei
           1710a]
 gi|254216069|gb|EET05454.1| putative ATP-dependent helicase lhr [Burkholderia pseudomallei
           1710a]
          Length = 1598

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIR 626
           E +YD I   A      L+ V T+RMAE    +L +R     +   H  +    R +  +
Sbjct: 270 ERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAHHGSLAKEHRFDAEQ 329

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            L+ GK  +LV    L  G+DI +  LV  L     G  R     +Q +GR+  ++  
Sbjct: 330 RLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFLQRVGRSGHHIGG 382


>gi|311745141|ref|ZP_07718926.1| transcription-repair coupling factor [Algoriphagus sp. PR1]
 gi|126577659|gb|EAZ81879.1| transcription-repair coupling factor [Algoriphagus sp. PR1]
          Length = 1117

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           K+G+SV+ + +   L    +++ D     G F + G  +++F S   +  +R+ +FG +I
Sbjct: 148 KVGESVDMEFVSEILTSYDFEKTDFVYEPGQFAIRGGILDVF-SFANENPYRLELFGKEI 206

Query: 358 EEISEFYPLTGQKIRNVETIKIYAN 382
           E I  F P +   I +V+ I +  N
Sbjct: 207 ESIRTFDPESQLSIASVDQISLIPN 231


>gi|74006734|ref|XP_861420.1| PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide
           3 isoform 7 [Canis familiaris]
          Length = 333

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 104 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 162

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 163 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 221

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 222 ---NITKDL 227


>gi|254191142|ref|ZP_04897647.1| putative ATP-dependent helicase lhr [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157938815|gb|EDO94485.1| putative ATP-dependent helicase lhr [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 1598

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIR 626
           E +YD I   A      L+ V T+RMAE    +L +R     +   H  +    R +  +
Sbjct: 270 ERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAHHGSLAKEHRFDAEQ 329

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            L+ GK  +LV    L  G+DI +  LV  L     G  R     +Q +GR+  ++  
Sbjct: 330 RLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFLQRVGRSGHHIGG 382


>gi|332534806|ref|ZP_08410631.1| transcription-repair coupling factor [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035770|gb|EGI72256.1| transcription-repair coupling factor [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 1137

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R+A++++E++ E ++     H +++  E  +I+ D    K++VLV   ++  G+D+P  
Sbjct: 812 ERVAQEISEWVPEASVTT--AHGQMREQELEQIMTDFYHQKYNVLVCTTIIETGIDVPTA 869

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + +  ADK G       L Q  GR  R+
Sbjct: 870 NTIIMDRADKLGL----AQLHQLRGRVGRS 895


>gi|225848441|ref|YP_002728604.1| ATP-dependent DNA helicase RecG [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644626|gb|ACN99676.1| ATP-dependent DNA helicase RecG [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 801

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 171 QLLLGVTGSGKTFTMA---KVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
           +++LG  GSGKT   A     +      + VMAP +ILA Q Y+ FKNF 
Sbjct: 384 RMVLGDVGSGKTVVAAISSLAVALNNYQSAVMAPTEILAQQHYNNFKNFL 433


>gi|308810755|ref|XP_003082686.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
 gi|116061155|emb|CAL56543.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
          Length = 448

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+ A  L   +    ++   +H ++   +R+  + D R G+   L+  ++   GLDIP 
Sbjct: 94  TKQQAHRLKIIMGLSKVKAGELHGDMTQTQRLAALDDFRTGRVTHLIATDVAARGLDIPS 153

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              V   DA K     +  S +  +GR AR
Sbjct: 154 VDAVISYDAPK-----TLASYLHRVGRTAR 178


>gi|27365517|ref|NP_761045.1| Helicase-like protein [Vibrio vulnificus CMCP6]
 gi|27361665|gb|AAO10572.1| Helicase-related protein [Vibrio vulnificus CMCP6]
          Length = 968

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 10/105 (9%)

Query: 580 QQGLRILLTVLTKR----MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +Q  R L   ++K+    MA+   +   ++ +R   +HS+  ++ R E +  L  G+  +
Sbjct: 444 RQQTRTLAFCVSKKHADFMAQHFNQTFADKGLRALSVHSD-SSIRRNEALSMLDKGEIQI 502

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           L  ++L  EG D+P    V +L   +     S    IQ +GR  R
Sbjct: 503 LFSVDLFNEGTDLPSIDTVLMLRPTE-----SNIVFIQQLGRGLR 542


>gi|67458759|ref|YP_246383.1| transcription-repair coupling factor [Rickettsia felis URRWXCal2]
 gi|75536784|sp|Q4UMJ0|MFD_RICFE RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|67004292|gb|AAY61218.1| Transcription-repair coupling factor [Rickettsia felis URRWXCal2]
          Length = 1142

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E++ +   GKFD+LV   ++  G+DI E   + I  AD  G     + L Q  GR  R  
Sbjct: 833 EVMSEFYAGKFDILVSTTIIESGIDIAEANTMVIHKADMLGL----SQLYQLRGRIGR-- 886

Query: 683 NSKVILYADTITKSIQLAIDETTRRRE 709
             KV  YA     S +     + RR E
Sbjct: 887 -GKVRGYAYLTVASHKKMTSHSLRRLE 912


>gi|13542321|ref|NP_112009.1| RNA helicase (ERCC4-like) [Thermoplasma volcanium GSS1]
 gi|14325756|dbj|BAB60659.1| translation initiation factor eIF4A [Thermoplasma volcanium GSS1]
          Length = 513

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ +II   R G ++VL+  ++  EGLDIP+  +V   +A     + S+   IQ  GR  
Sbjct: 396 EQRQIIEQFRNGTYNVLIATSIAEEGLDIPDTDVVVFYEA-----VPSEIRFIQRKGRTG 450

Query: 680 RNVNSKVIL 688
           R+ + +V +
Sbjct: 451 RSRSGEVYI 459


>gi|290953610|ref|ZP_06558231.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313111|ref|ZP_06803801.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 1141

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKT-FTMAKVIEAMQ--RPAIVMAPN 202
           Y  + DQ +AI  + K + S + + +L+ G  G GKT  TM     A Q  +   ++ P 
Sbjct: 596 YEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEITMRAAFLATQNQKQVAILVPT 655

Query: 203 KILAAQLYSEFKNFFPHNAV 222
            ILA Q Y+ FK+ F + A+
Sbjct: 656 TILAQQHYNSFKDRFTNTAI 675


>gi|237713124|ref|ZP_04543605.1| type III restriction enzyme [Bacteroides sp. D1]
 gi|262409485|ref|ZP_06086027.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229446782|gb|EEO52573.1| type III restriction enzyme [Bacteroides sp. D1]
 gi|262352697|gb|EEZ01795.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 1082

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 15/122 (12%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V ++  R+ +E+ YD I +A            TK+ A+++ E +Y++   +  +      
Sbjct: 342 VAVKQLRSDMENGYDHILMARCS---------TKQRAKEVME-IYQQYSDLNPVMVFSSM 391

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
             +  I+ +++  K  ++V +N+L EG D+PE  + AI DA +     S    +Q IGR 
Sbjct: 392 PNQKSILNNIKDKKHKIIVCVNMLGEGFDMPELKIAAIHDAKQ-----SLPITLQFIGRF 446

Query: 679 AR 680
            R
Sbjct: 447 TR 448


>gi|226949864|ref|YP_002804955.1| primosomal protein N' [Clostridium botulinum A2 str. Kyoto]
 gi|226843186|gb|ACO85852.1| primosomal protein N' [Clostridium botulinum A2 str. Kyoto]
          Length = 735

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 10/111 (9%)

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169
           + S N L+K+G  +   ++  +N +++ I  +    +   +GDQ  A+ ++L   +S  K
Sbjct: 166 LSSINTLIKHG--FLIQKNQVVNRYNEKI--YGNYEEKILNGDQSLALYRIL---NSNRK 218

Query: 170 VQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFF 217
           + L+ GVTGSGKT     +++ +    + +I++ P   L  Q+   FK  F
Sbjct: 219 LFLIHGVTGSGKTEIYMHLVKKLIEKDKDSIILVPEISLTPQMVERFKGRF 269


>gi|222475988|ref|YP_002564509.1| type III restriction protein res subunit [Halorubrum lacusprofundi
           ATCC 49239]
 gi|222454359|gb|ACM58623.1| type III restriction protein res subunit [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 466

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           + KT ER EI+   R G++ +LV   +L EG+D+P   +  IL         SK    Q 
Sbjct: 373 QTKTDERTEILDRFRSGEYSMLVTSQVLDEGIDVPAANVGIILSGSA-----SKRQYAQR 427

Query: 675 IGRAARNVNSK 685
           +GR  R  + +
Sbjct: 428 LGRILRPTDDR 438


>gi|221041528|dbj|BAH12441.1| unnamed protein product [Homo sapiens]
          Length = 578

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           E+I+  +    ++LV  ++  EGLDIP C +V      + G L ++ S++Q  GRA
Sbjct: 415 EVIQKFQDRTLNLLVATSVAEEGLDIPHCNVVV-----RYGLLTNEISMVQARGRA 465


>gi|151942219|gb|EDN60575.1| RNA helicase [Saccharomyces cerevisiae YJM789]
          Length = 588

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 585 ILLTVLTKRMAEDLTE-YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           I++ +  K+ A+ L E +  E N++V  +H      +R   ++  R  K  +++  N+  
Sbjct: 439 IIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIATNVAA 498

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDIP   LV      K+         I  IGR  R  N
Sbjct: 499 RGLDIPNVSLVVNFQISKK-----MDDYIHRIGRTGRAAN 533


>gi|311997|emb|CAA48790.1| eukaryotic translation initiation factor 4A (eIF-4A) [Drosophila
           melanogaster]
          Length = 402

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++        ++   T+R  + LT+ +   N  V  MH +++  +R  I++  R
Sbjct: 261 DLYDTLSITQS-----VIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFR 315

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 316 SGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 353


>gi|17065084|gb|AAL32696.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|21387213|gb|AAM48010.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
          Length = 551

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 33/66 (50%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  +D+   L  R +    MH ++  L R  +++  + G+  VLV   L   GLD+ EC 
Sbjct: 418 RQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECD 477

Query: 653 LVAILD 658
           LV  L+
Sbjct: 478 LVVNLE 483


>gi|77919208|ref|YP_357023.1| ATP-dependent DNA helicase RecG [Pelobacter carbinolicus DSM 2380]
 gi|77545291|gb|ABA88853.1| ATP-dependent DNA helicase RecG [Pelobacter carbinolicus DSM 2380]
          Length = 717

 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 595 AEDLTEYLYER---NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           A +  E+L E+   + R+  +H +++  ++  I+R  + G+ D+LV   ++  G+D+P  
Sbjct: 519 ATEGAEFLQEKVFPDKRIGVLHGKMRPADKEAIMRCFKAGELDILVSTTVIEVGIDVPNA 578

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            ++ I  A++ G       L Q  GR  R  +    L
Sbjct: 579 TVMMIEHAERFGL----AQLHQLRGRVGRGQHQSYCL 611


>gi|297529729|ref|YP_003671004.1| type III restriction protein res subunit [Geobacillus sp. C56-T3]
 gi|297252981|gb|ADI26427.1| type III restriction protein res subunit [Geobacillus sp. C56-T3]
          Length = 818

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 5/102 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+   + R A  L+EY      R   +HS+   + R + I  L   + D +  ++L  
Sbjct: 451 RTLVFCSSIRQAGFLSEYFQRHGCRTVSLHSKQTAISRKQAIAMLERRELDAIFTVDLFN 510

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           EG+DIP    +  +   +     S T   Q +GR  R    K
Sbjct: 511 EGVDIPSVDTLLFVRPTE-----SLTVFTQQVGRGLRLYKGK 547


>gi|281201805|gb|EFA76013.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 701

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V  ++ AE++ + L  R    RY+   ++  ER+ ++ +L+  K  +LV  +L+  G
Sbjct: 319 IVFVSERQRAEEVCKLLVRRGWPTRYIAGAMEQRERLLVMEELKDFKLRILVSTDLIARG 378

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +DI    LV  +D       R   +    IGR  R
Sbjct: 379 IDIERVNLVVNIDMP-----RDYETYFHRIGRTGR 408


>gi|254482117|ref|ZP_05095359.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037807|gb|EEB78472.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 459

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK++  D+T +L E  IR   +H +++  +R +++   R     VLV  ++   GLDI +
Sbjct: 251 TKQLVRDVTAHLDESGIRALALHGDMEQRDRDQVLIQFRQQSCSVLVATDVAARGLDIDD 310

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI--LYADT 692
             +V   +  +E         +  +GR  R   + +   L+AD+
Sbjct: 311 LPVVVNFELPRE-----TEVYVHRVGRTGRAGKAGLALSLFADS 349


>gi|183601427|ref|ZP_02962797.1| possible ATP-dependent RNA helicase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|241191073|ref|YP_002968467.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196479|ref|YP_002970034.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219033|gb|EDT89674.1| possible ATP-dependent RNA helicase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|240249465|gb|ACS46405.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251033|gb|ACS47972.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295794062|gb|ADG33597.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 645

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 6/112 (5%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           LA+ +G RIL T  TK  A+ L   L +  I    +H  +   +R   ++    G+ +VL
Sbjct: 275 LASGRGRRILFT-RTKFQAKKLAHTLTQSGIPAAELHGNLSQHQRDRNLQVFESGQVNVL 333

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  ++   G+D+   GLV  ++  ++       S     GR AR   S  ++
Sbjct: 334 VATDVAARGIDVSNVGLVVQVEPPED-----PKSFTHRSGRTARAGQSGDVV 380


>gi|189913376|ref|YP_001964605.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|167781444|gb|ABZ99741.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 534

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 6/93 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+ A+DL   L  +   V  +H ++   +R ++++ L  G+  +LV  ++   GLD+ +
Sbjct: 261 TKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVATDVAARGLDVKD 320

Query: 651 CGLVAI--LDADKEGFLRSKTSLIQTIGRAARN 681
             LV    L  D E +    T  I   GRA ++
Sbjct: 321 LSLVINYHLPFDSESY----THRIGRTGRAGKS 349


>gi|53804089|ref|YP_114029.1| DEAD-box ATP dependent DNA helicase [Methylococcus capsulatus str.
           Bath]
 gi|53757850|gb|AAU92141.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Methylococcus
           capsulatus str. Bath]
          Length = 1412

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRY 611
           L D P+E   +      VYD +    +Q    L+ V T+R+AE L   L ER     V  
Sbjct: 239 LPDFPLEAVLSNEAAGQVYDRMAQLVRQHRTTLVFVNTRRLAERLARALAERIGEEGVTS 298

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
            H  +   +R+E    L+ G+   LV    L  G+DI +  LV    A       +  + 
Sbjct: 299 HHGSLSKEQRLEAETRLKAGRLKALVATASLELGIDIGDIDLVCQFGATG-----TIAAF 353

Query: 672 IQTIGRAA 679
           +Q +GR+ 
Sbjct: 354 LQRVGRSG 361


>gi|89256268|ref|YP_513630.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314722|ref|YP_763445.1| transcription-repair coupling factor TRCF [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156502334|ref|YP_001428399.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254367605|ref|ZP_04983626.1| transcription-repair coupling factor, ATP-dependent [Francisella
           tularensis subsp. holarctica 257]
 gi|89144099|emb|CAJ79356.1| Transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. holarctica LVS]
 gi|115129621|gb|ABI82808.1| transcription-repair coupling factor TRCF [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253416|gb|EBA52510.1| transcription-repair coupling factor, ATP-dependent [Francisella
           tularensis subsp. holarctica 257]
 gi|156252937|gb|ABU61443.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 1141

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKT-FTMAKVIEAMQ--RPAIVMAPN 202
           Y  + DQ +AI  + K + S + + +L+ G  G GKT  TM     A Q  +   ++ P 
Sbjct: 596 YEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEITMRAAFLATQNQKQVAILVPT 655

Query: 203 KILAAQLYSEFKNFFPHNAV 222
            ILA Q Y+ FK+ F + A+
Sbjct: 656 TILAQQHYNSFKDRFTNTAI 675


>gi|295115121|emb|CBL35968.1| phenylalanyl-tRNA synthetase beta subunit [butyrate-producing
           bacterium SM4/1]
          Length = 802

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 90  QTREISEQTMTPSVQALARLIQSDNPLLKNGKIW--TPHR------SWSINNHSKDITFF 141
           ++ ++ ++ + P    L R++   NPL ++  I   TP        S + N  +KD+  +
Sbjct: 530 ESPKVFDRLLIPEDSTLRRVVTISNPLGEDFSIMRTTPLNGMLTSLSTNYNRRNKDVKLY 589

Query: 142 QMQTDYHPSGDQPAA--IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++ T Y P+ D  +   + Q    +   E+ Q  LG+ G G  FTM  V+E
Sbjct: 590 ELATIYLPAEDSVSKEYLEQTGLPMLPDERQQFTLGMYGEGDFFTMKGVVE 640


>gi|289422689|ref|ZP_06424529.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
 gi|289156868|gb|EFD05493.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
          Length = 547

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 9/100 (9%)

Query: 587 LTVL---TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           LTV+   TK+ A++L   L  R      +H ++K ++R  ++   R G  D+LV  ++  
Sbjct: 245 LTVVFTNTKKGADELVSDLQARGYGADSLHGDLKQVQRDIVMDKFRHGTIDILVATDVAA 304

Query: 644 EGLDIP--ECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            G+D+   EC +   L  D+E ++      I   GRA R+
Sbjct: 305 RGIDVDDVECVINYELPQDEEYYVHR----IGRTGRAGRD 340


>gi|238754400|ref|ZP_04615756.1| Transcription-repair-coupling factor [Yersinia ruckeri ATCC 29473]
 gi|238707433|gb|EEP99794.1| Transcription-repair-coupling factor [Yersinia ruckeri ATCC 29473]
          Length = 1148

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 56/305 (18%), Positives = 126/305 (41%), Gaps = 35/305 (11%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           R  V+ L  +TGS      A++IE    P +++AP+   A +L  E + F  H+     +
Sbjct: 13  RGDVRQLGQLTGSACAIECAEIIERHPGPVMLIAPDMQNALRLRDEIQQFTSHHVST--L 70

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
           S ++    +++ P  D  I    S   Q+  M+             I++   + +  +  
Sbjct: 71  SDWETLPYDSFSPHQDI-ISARLSCLYQLPSMKRG----------VIILPVNTLMQRVCP 119

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            E      + ++ G  + + +L + L +  Y+  D  +  G F   G  ++++P   E+ 
Sbjct: 120 HEFLHGHALVMEKGQHLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEE- 178

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ +  F   + + +  V+ I +     +    P    A++  + + + +
Sbjct: 179 PYRIDFFDDEIDSLRVFDVDSQRTLTEVDHINLLPAHEF----PIDQAAIELFRSQWREQ 234

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             E+ ++   +  Q  +      +E  +     QS+                P+LF Y+P
Sbjct: 235 F-EVRRDPEHIYQQVSKGIWPAGIEYWQPLFFSQSL----------------PSLFSYLP 277

Query: 467 EDSLL 471
           +++LL
Sbjct: 278 DNTLL 282


>gi|227502907|ref|ZP_03932956.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
 gi|227076329|gb|EEI14292.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
          Length = 452

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 38/75 (50%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L AQ   R ++   TKR A  L + L ER   V  +H ++    R + ++  R G+ D+L
Sbjct: 251 LQAQGRGRSIIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKSLQAFRSGEVDIL 310

Query: 637 VGINLLREGLDIPEC 651
           V  ++   G+D+ + 
Sbjct: 311 VATDIAARGIDVDDV 325


>gi|219125305|ref|XP_002182924.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405718|gb|EEC45660.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 380

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 11/92 (11%)

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VL KR+ E L +      I V  +H +    +R   +R    G  DVL+G ++   GLDI
Sbjct: 252 VLAKRVREQLPK------INVETLHGDKHQSDRQAALRAFTKGDVDVLIGTDVAGRGLDI 305

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           P    V  +D  K     +  + +  +GRA R
Sbjct: 306 PHVATVLSMDPAK-----NLDAHVHRVGRAGR 332


>gi|153933517|ref|YP_001384688.1| primosome assembly protein PriA [Clostridium botulinum A str. ATCC
           19397]
 gi|153937769|ref|YP_001388209.1| primosome assembly protein PriA [Clostridium botulinum A str. Hall]
 gi|152929561|gb|ABS35061.1| primosomal protein N' [Clostridium botulinum A str. ATCC 19397]
 gi|152933683|gb|ABS39182.1| primosomal protein N' [Clostridium botulinum A str. Hall]
          Length = 735

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 10/111 (9%)

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169
           + S N L+K+G  +   ++  +N +++ I  +    +   +GDQ  A+ ++L   +S  K
Sbjct: 166 LSSINTLIKHG--FLIQKNQVVNRYNEKI--YGNYEEKILNGDQSLALYRIL---NSNRK 218

Query: 170 VQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFF 217
           + L+ GVTGSGKT     +++ +    + +I++ P   L  Q+   FK  F
Sbjct: 219 LFLIHGVTGSGKTEIYMHLVKKLIEKDKDSIILVPEISLTPQMVERFKGRF 269


>gi|254303429|ref|ZP_04970787.1| ATP-dependent DNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323621|gb|EDK88871.1| ATP-dependent DNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 689

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N ++  +H ++K  E+ E++   +  ++D+L+   ++  G+D+P   ++ I +A++ G  
Sbjct: 511 NKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPTSTIMTIYNAERFGL- 569

Query: 666 RSKTSLIQTIGRAAR 680
              ++L Q  GR  R
Sbjct: 570 ---SALHQLRGRVGR 581


>gi|56412534|ref|YP_149609.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361469|ref|YP_002141105.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56126791|gb|AAV76297.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197092945|emb|CAR58375.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 444

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +VLV  ++  
Sbjct: 250 RSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DIP+   V   D       RS  + +  IGR  R
Sbjct: 310 RGIDIPDVSHVINFD-----MPRSGDTYLHRIGRTGR 341


>gi|325977638|ref|YP_004287354.1| putative competence protein ComFA [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325177566|emb|CBZ47610.1| putative competence protein ComFA [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 433

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT-- 674
           KT  R+EI+   R  +  +LV   +L  G+  P   +  +L   +   L +K++L+Q   
Sbjct: 336 KTENRLEIVEKFRKQELSILVTTTILERGVTFPCVDVFVVLANHR---LYTKSALVQISG 392

Query: 675 -IGRAARNVNSKVILYADTITKSIQLAIDE 703
            +GRAA     +++   D  TK ++ AI E
Sbjct: 393 RVGRAAERPTGELLFLHDGSTKEMRKAIAE 422


>gi|315126314|ref|YP_004068317.1| transcription-repair ATP-dependent coupling factor
           [Pseudoalteromonas sp. SM9913]
 gi|315014828|gb|ADT68166.1| transcription-repair ATP-dependent coupling factor
           [Pseudoalteromonas sp. SM9913]
          Length = 1157

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R+A++++E++ E    V   H +++  E  +I+ D    K++VLV   ++  G+D+P  
Sbjct: 832 ERVAQEISEWVPEAT--VTSAHGQMREQELEQIMTDFYHQKYNVLVCTTIIETGIDVPTA 889

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + +  ADK G       L Q  GR  R+
Sbjct: 890 NTIIMDRADKLGL----AQLHQLRGRVGRS 915


>gi|312889170|ref|ZP_07748727.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311298332|gb|EFQ75444.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 404

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 567 QVEDVYDEINLAAQQGL-------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           Q+  VYD    A  + L        +++   TK   +++ + L +  ++V   HS++K  
Sbjct: 220 QIYKVYDNQKTALTEMLLKDAAYTSVIIFASTKEKVKEVYKVLGKLKVKVEAFHSDLKQA 279

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           ER EI+   +  K  VL+G ++L  G+D+    LV
Sbjct: 280 EREEILLQFKNRKLQVLIGTDVLSRGIDVEGIDLV 314


>gi|161502252|ref|YP_001569364.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863599|gb|ABX20222.1| hypothetical protein SARI_00280 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 444

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +VLV  ++  
Sbjct: 250 RSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DIP+   V   D       RS  + +  IGR  R
Sbjct: 310 RGIDIPDVSHVINFD-----MPRSGDTYLHRIGRTGR 341


>gi|254369252|ref|ZP_04985264.1| transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. holarctica FSC022]
 gi|157122202|gb|EDO66342.1| transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. holarctica FSC022]
          Length = 1141

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKT-FTMAKVIEAMQ--RPAIVMAPN 202
           Y  + DQ +AI  + K + S + + +L+ G  G GKT  TM     A Q  +   ++ P 
Sbjct: 596 YEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEITMRAAFLATQNQKQVAILVPT 655

Query: 203 KILAAQLYSEFKNFFPHNAV 222
            ILA Q Y+ FK+ F + A+
Sbjct: 656 TILAQQHYNSFKDRFTNTAI 675


>gi|19113586|ref|NP_596794.1| ATP-dependent RNA helicase Dbp8 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74654494|sp|Q9HGM5|DBP8_SCHPO RecName: Full=ATP-dependent RNA helicase dbp8
 gi|9929273|emb|CAC05248.1| ATP-dependent RNA helicase Dbp8 (predicted) [Schizosaccharomyces
           pombe]
          Length = 453

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R AE +   L    +RV  +HSE+   ERI  +   R     +LV  ++   GLDIP   
Sbjct: 269 RTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQ 328

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LV   D       R     I  +GR AR
Sbjct: 329 LVINFD-----LPRDPDDYIHRVGRTAR 351


>gi|79342966|ref|NP_172737.2| EMB1586 (embryo defective 1586); ATP binding / ATP-dependent
           helicase/ helicase/ nucleic acid binding [Arabidopsis
           thaliana]
 gi|108861896|sp|Q8W4E1|RH47_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 47,
           mitochondrial; AltName: Full=Protein EMBRYO DEFECTIVE
           1586; AltName: Full=Protein INCREASED SIZE EXCLUSION
           LIMIT 1; Flags: Precursor
 gi|12056979|gb|AAF88089.2|AC025417_17 T12C24.30 [Arabidopsis thaliana]
 gi|51969316|dbj|BAD43350.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|51969564|dbj|BAD43474.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|51969644|dbj|BAD43514.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|51969728|dbj|BAD43556.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|51970230|dbj|BAD43807.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|51970530|dbj|BAD43957.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|110739597|dbj|BAF01707.1| hypothetical protein [Arabidopsis thaliana]
 gi|110740002|dbj|BAF01905.1| hypothetical protein [Arabidopsis thaliana]
 gi|110740576|dbj|BAE98393.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190805|gb|AEE28926.1| DEAD-box ATP-dependent RNA helicase 47 [Arabidopsis thaliana]
          Length = 551

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 33/66 (50%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  +D+   L  R +    MH ++  L R  +++  + G+  VLV   L   GLD+ EC 
Sbjct: 418 RQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECD 477

Query: 653 LVAILD 658
           LV  L+
Sbjct: 478 LVVNLE 483


>gi|330995628|ref|ZP_08319528.1| helicase protein [Paraprevotella xylaniphila YIT 11841]
 gi|329575034|gb|EGG56587.1| helicase protein [Paraprevotella xylaniphila YIT 11841]
          Length = 603

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 6/113 (5%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +  +YD     A  G + ++  + +  A  + EY  +  +    + ++    ER  ++ D
Sbjct: 202 IRHLYDTYRTFAS-GKKGIVYAINREHARHILEYYRDGGVSCCMIDAKTPPEERRSLVED 260

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            R G+F ++V +++  EG D+PE  ++ +          S    +Q +GR  R
Sbjct: 261 YRNGRFTLMVNVDIFSEGWDVPEVEVIQLARPTL-----SLAKYLQQVGRGMR 308


>gi|319778596|ref|YP_004129509.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
 gi|317108620|gb|ADU91366.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
          Length = 581

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 2/97 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TKR A DL   L + +I+   +H ++   +R   I+ L  GK  VLV  ++   
Sbjct: 274 VIVFTKTKRGATDLAGRLKDIDIKASELHGDMNQGQRNRTIQGLHKGKIKVLVATDVAAR 333

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           G+DI   G+  +++ D           I   GRA R+
Sbjct: 334 GIDIQ--GISHVINYDLPMQAEDYVHRIGRTGRAGRD 368


>gi|313204359|ref|YP_004043016.1| primosomal protein n' [Paludibacter propionicigenes WB4]
 gi|312443675|gb|ADQ80031.1| primosomal protein N' [Paludibacter propionicigenes WB4]
          Length = 819

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 8/74 (10%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTI 675
           +II D    K D+L+G  ++ +GLD     LV IL+AD            R+   + Q  
Sbjct: 613 KIISDFEQHKVDILIGTQMVSKGLDFERVSLVGILNADNMLNFPDFRAHERAFQLMAQVS 672

Query: 676 GRAAR-NVNSKVIL 688
           GRA R N    VIL
Sbjct: 673 GRAGRKNKRGTVIL 686


>gi|258509516|ref|YP_003172267.1| transcription-repair coupling factor [Lactobacillus rhamnosus GG]
 gi|257149443|emb|CAR88416.1| Transcription-repair coupling factor [Lactobacillus rhamnosus GG]
 gi|259650784|dbj|BAI42946.1| transcription-repair coupling factor [Lactobacillus rhamnosus GG]
          Length = 1175

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 45/235 (19%), Positives = 103/235 (43%), Gaps = 19/235 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
            L+ G++GS KT     +++  ++  +++  N+  A +L ++  +      V      YD
Sbjct: 25  HLVTGLSGSAKTVFFGALLQQQKKQLLIVENNRFHADELAADLSSLLGDALV------YD 78

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC---IYGIGSV 287
           +  P   V   +  +    + N++I+     A   +      I+V+S++    I    + 
Sbjct: 79  F--PVEDVLAAEVAVSSPETRNDRIN-----ALTFIQSGQPGIIVTSLAGYKRILPAPAA 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
            + S+++V +     ++ + +   LV   Y+R  +    G F + G  I+I+P + +D  
Sbjct: 132 WAASELVVDMD--SELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDIYPLNQDD-P 188

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            R+ +F  +I+ I  F   T + ++ ++ I I   +  +     L  A   I ++
Sbjct: 189 IRIELFDTEIDSIRSFDIATQRSLKKLDQIAIAPATDMIASDQVLTDAGARIGKQ 243



 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y H ++   +   +I D   G +DVLV   ++  G+D+P    + I +AD  G L   
Sbjct: 856 IGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYG-LSQL 914

Query: 669 TSLIQTIGRAAR 680
             L   IGR++R
Sbjct: 915 YQLRGRIGRSSR 926


>gi|255536470|ref|YP_003096841.1| Transcription-repair coupling factor [Flavobacteriaceae bacterium
           3519-10]
 gi|255342666|gb|ACU08779.1| Transcription-repair coupling factor [Flavobacteriaceae bacterium
           3519-10]
          Length = 1138

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 9/95 (9%)

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E K LER   + D   GK+DVLV   ++  G+D+P    + I DA + G       L Q 
Sbjct: 822 EGKQLERN--VLDFMEGKYDVLVSTTIVESGVDVPNANTMFINDAQRFGM----ADLHQM 875

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
            GR  R+ N K   Y   IT    +   +  +R E
Sbjct: 876 RGRVGRS-NRKAFCY--LITPPFDMMTSDARKRLE 907


>gi|225455602|ref|XP_002269873.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 711

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 12/124 (9%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           SAR+QV  + D I   +  G  I+ T  TK  A +L   L       R +H +++  +R 
Sbjct: 357 SARSQV--IPDVIRCYSSGGRTIIFTE-TKDSASELAGLLPG----ARALHGDIQQSQRE 409

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             +   R GKF  LV  N+   GLDI +  L+   +       R   + I   GR  R  
Sbjct: 410 VTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP-----RDVEAYIHRSGRTGRAG 464

Query: 683 NSKV 686
           NS V
Sbjct: 465 NSGV 468


>gi|199598792|ref|ZP_03212204.1| Transcription-repair coupling factor (superfamily II helicase)
           [Lactobacillus rhamnosus HN001]
 gi|199590297|gb|EDY98391.1| Transcription-repair coupling factor (superfamily II helicase)
           [Lactobacillus rhamnosus HN001]
          Length = 1175

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 45/235 (19%), Positives = 103/235 (43%), Gaps = 19/235 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
            L+ G++GS KT     +++  ++  +++  N+  A +L ++  +      V      YD
Sbjct: 25  HLVTGLSGSAKTVFFGALLQQQKKQLLIVENNRFHADELAADLSSLLGDALV------YD 78

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC---IYGIGSV 287
           +  P   V   +  +    + N++I+     A   +      I+V+S++    I    + 
Sbjct: 79  F--PVEDVLAAEVAVSSPETRNDRIN-----ALTFIQSGQPGIIVTSLAGYKRILPAPTA 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
            + S+++V +     ++ + +   LV   Y+R  +    G F + G  I+I+P + +D  
Sbjct: 132 WAASELVVDMD--SELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDIYPLNQDD-P 188

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            R+ +F  +I+ I  F   T + ++ ++ I I   +  +     L  A   I ++
Sbjct: 189 IRIELFDTEIDSIRSFDIATQRSLKKLDQIAIAPATDMIASDQVLTDAGAQIGKQ 243



 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y H ++   +   +I D   G +DVLV   ++  G+D+P    + I +AD  G L   
Sbjct: 856 IGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYG-LSQL 914

Query: 669 TSLIQTIGRAAR 680
             L   IGR++R
Sbjct: 915 YQLRGRIGRSSR 926


>gi|190404808|gb|EDV08075.1| pre-mRNA splicing factor ATP-dependent RNA helicase PRP28
           [Saccharomyces cerevisiae RM11-1a]
 gi|207346532|gb|EDZ73004.1| YDR243Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|323338187|gb|EGA79420.1| Prp28p [Saccharomyces cerevisiae Vin13]
          Length = 588

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 585 ILLTVLTKRMAEDLTE-YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           I++ +  K+ A+ L E +  E N++V  +H      +R   ++  R  K  +++  N+  
Sbjct: 439 IIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIATNVAA 498

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDIP   LV      K+         I  IGR  R  N
Sbjct: 499 RGLDIPNVSLVVNFQISKK-----MDDYIHRIGRTGRAAN 533


>gi|322823143|gb|EFZ28962.1| eukaryotic initiation factor 4a, putative [Trypanosoma cruzi]
          Length = 404

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y+ +++A       ++   T+R  + L + L + N  V  MHSE+   +R +++   R
Sbjct: 261 DLYETVSIAQS-----VIFANTRRKVDWLAQQLNQSNHTVSCMHSEMPKQDREKVMSTFR 315

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VLV  +L+  G+D+    +V   D   +KE +L
Sbjct: 316 NGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKESYL 353


>gi|322412411|gb|EFY03319.1| primosome assembly protein PriA [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 794

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILA 206
           +  Q +A+  +++ I    K  L+ G+TGSGKT     +IEA+    + AIV+ P   L 
Sbjct: 259 NAQQASAVTDIVEQIGKPSKPFLIEGITGSGKTEVYLHIIEAVLKQDKTAIVLVPEISLT 318

Query: 207 AQLYSEFKNFF 217
            Q+ S F + F
Sbjct: 319 PQMTSRFISRF 329


>gi|297744770|emb|CBI38032.3| unnamed protein product [Vitis vinifera]
          Length = 797

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 4/96 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI-IRDLRLGKFDVLVGINLLRE 644
           ++ + TK+ A++L + L +   RV  +H   K+ E+ EI +   R  +++VLV  ++   
Sbjct: 573 IVFINTKKSADNLAKGLDKAGYRVTTLHGG-KSQEQREISLEGFRTKRYNVLVATDVAGR 631

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+DIP+  +  +++ D  G +   T  I   GRA +
Sbjct: 632 GIDIPD--VAHVINYDMPGNIEMYTHRIGRTGRAGK 665


>gi|302345038|ref|YP_003813391.1| primosomal protein N' [Prevotella melaninogenica ATCC 25845]
 gi|302149001|gb|ADK95263.1| primosomal protein N' [Prevotella melaninogenica ATCC 25845]
          Length = 768

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           +I D  +GK ++L+G  ++ +GLD  +  +V IL+AD          + ++   + Q  G
Sbjct: 563 LINDFSIGKSNLLIGTQMISKGLDFDKVSVVGILNADSMLNYPDFRAYEQAFMMMSQVSG 622

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
           RA R     +++     TKS  L + +   R + Q
Sbjct: 623 RAGRKGRQGLVILQ---TKSPDLPVIQQVVRNDYQ 654


>gi|224129414|ref|XP_002328711.1| predicted protein [Populus trichocarpa]
 gi|222839009|gb|EEE77360.1| predicted protein [Populus trichocarpa]
          Length = 587

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 70/183 (38%), Gaps = 26/183 (14%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   +D+ EYL  + +    +H      ER   I   + GK DVLV  ++  +
Sbjct: 396 VLVFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASK 455

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P+   V   D   E       + +  IGR  R   + +   A T     Q    ET
Sbjct: 456 GLDFPDIQHVINYDMPAE-----IENYVHRIGRTGRCGKTGI---ATTFINKNQ---SET 504

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
           T    K L    K  I P      + E+ DP  +ED  T          S S  KG A+ 
Sbjct: 505 TLLDLKHLLQEAKQRIPPV-----LAELNDP--MEDGDTIT--------SASGVKGCAYC 549

Query: 765 KSL 767
             L
Sbjct: 550 GGL 552


>gi|219119937|ref|XP_002180719.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408192|gb|EEC48127.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 822

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 576 NLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           N A QQ +  + ++   TKR A++L      +++  + +H +V   +R   +   R G F
Sbjct: 427 NQAMQQKIFGKTIVFTETKREADELVSGGVFKSLTAQALHGDVGQKQRDSTLAAFRSGAF 486

Query: 634 DVLVGINLLREGLDIPECGLVAILD 658
           +VLV  ++   G+DI +  LV   D
Sbjct: 487 NVLVATDVAARGIDIQDVDLVIQFD 511


>gi|197294292|ref|YP_001798833.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
 gi|171853619|emb|CAM11490.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
          Length = 564

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           +L   TK+  +++T +L ++      +H ++K  +R  ++ + R GK  +L+  ++   G
Sbjct: 246 ILFANTKKDVDEITSFLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAARG 305

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +DI +  +V   D   E         +  IGR  R
Sbjct: 306 IDISDIKMVVNYDLPHED-----EVYVHRIGRTGR 335


>gi|148701846|gb|EDL33793.1| mCG19408 [Mus musculus]
          Length = 615

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 6/134 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLSEFKHGKASILIATDVAS 402

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLD+ +   V   D     +  S    I  IGR AR+  +    Y      +I+ A D 
Sbjct: 403 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKTGTA-YTFFTPNNIKQASDL 456

Query: 704 TTRRREKQLEHNKK 717
            +  RE     N K
Sbjct: 457 ISVLREANQAINPK 470


>gi|119503539|ref|ZP_01625622.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2080]
 gi|119460601|gb|EAW41693.1| ATP-dependent DNA helicase RecG [marine gamma proteobacterium
           HTCC2080]
          Length = 690

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 8/110 (7%)

Query: 590 LTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           L  R AE   E L  +  N+ +  +H  +   ++  ++   + GK ++LV   ++  G+D
Sbjct: 496 LDARAAEATAELLQAQLPNLHIGLIHGRLPPADKEAMMAAFKAGKIELLVATTVIEVGVD 555

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
           +P   L+ I + ++ G       L Q  GR  R   +   V+LY   +++
Sbjct: 556 VPNASLMIIENPERLGL----AQLHQLRGRVGRGATASHCVLLYQAPLSQ 601


>gi|118580930|ref|YP_902180.1| ATP-dependent DNA helicase RecG [Pelobacter propionicus DSM 2379]
 gi|118503640|gb|ABL00123.1| ATP-dependent DNA helicase RecG [Pelobacter propionicus DSM 2379]
          Length = 778

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 19/148 (12%)

Query: 558 PVEIR-SARTQVEDVYDEINLAAQQGLRILLTV------------LTKRMAEDLTEYLYE 604
           PVE R +  +Q   VYD I     QG +  +                 +MAE L + ++ 
Sbjct: 534 PVETRVTPESQRVRVYDTIRREVGQGRQAYVVYPLVEENERSELKAAAQMAEQLGKEIFP 593

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            ++RV  +H  +   E+  ++   +  + D+LV   ++  G+D+P   ++ I  A++ G 
Sbjct: 594 -DLRVGLLHGRMNPQEKESVMASFKARELDILVSTTVIEVGIDVPNATVMVIEHAERFGL 652

Query: 665 LRSKTSLIQTIGRAARN-VNSKVILYAD 691
               + L Q  GR  R    S+ IL  +
Sbjct: 653 ----SQLHQLRGRVGRGAARSRCILMTN 676


>gi|54301879|ref|YP_131872.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46915299|emb|CAG22072.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 455

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 21/142 (14%)

Query: 554 LVDPPVEIR----SARTQVEDVYDEINLAAQQGL-----------RILLTVLTKRMAEDL 598
           L++ PVEI+     A T V+ V+  +N   +  L           + L+ V  K   E L
Sbjct: 240 LLNDPVEIQLQSADASTLVQRVF-TVNKGEKTALLAHLIKQNEWRQALIFVNAKNSCEHL 298

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
            + L +R I     H +     R  ++   + G+ +VL+  ++   GLDI +  +V   D
Sbjct: 299 ADKLSKRGITAEVFHGDKGQGARTRVLDAFKAGEIEVLIATDIAARGLDIEKLPVVINFD 358

Query: 659 ADKEGFLRSKTSLIQTIGRAAR 680
                  RS +  +  IGR+ R
Sbjct: 359 -----LPRSPSDYMHRIGRSGR 375


>gi|9955402|dbj|BAB12217.1| vasa homolog [Ciona savignyi]
          Length = 770

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 5/109 (4%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I+  A+   R L+ V TKR A+ L   L +       +H +    ER + +RD +     
Sbjct: 560 ISDVAETRSRTLVFVETKRGADFLACMLSQEGCPTTSIHGDRLQQEREQALRDFKSAVCP 619

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +L+  ++   GLDIP+   V   D  KE         +  IGR  R  N
Sbjct: 620 ILIATSVAARGLDIPKVEHVINYDMPKE-----IDEYVHRIGRTGRCGN 663


>gi|71744488|ref|XP_803774.1| eukaryotic initiation factor 4a [Trypanosoma brucei TREU927]
 gi|122112495|sp|Q38F76|IF4A_TRYBB RecName: Full=Probable eukaryotic initiation factor 4A;
           Short=eIF-4A; AltName: Full=ATP-dependent RNA helicase
           eIF4A
 gi|70831039|gb|EAN76544.1| eukaryotic initiation factor 4a, putative [Trypanosoma brucei]
 gi|261331185|emb|CBH14174.1| eukaryotic initiation factor 4a, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 404

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y+ +++A       ++   T+R  + L   L   N  V  MHSE+   ER +++   R
Sbjct: 261 DLYETVSIAQS-----VIFANTRRKVDWLASQLNSSNHTVSCMHSEMSKQEREKVMGTFR 315

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VLV  +L+  G+D+    +V   D   +KE +L
Sbjct: 316 NGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYL 353


>gi|119773652|ref|YP_926392.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
 gi|119766152|gb|ABL98722.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
          Length = 637

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V T+    +L E L  R      +H ++    R   +  L+ GK D+L+  ++   
Sbjct: 248 IIIFVRTRNSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDILIATDVAAR 307

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
           GLD+   G V   D   D E ++      I   GRA R
Sbjct: 308 GLDVERIGHVVNYDIPYDTEAYVHR----IGRTGRAGR 341


>gi|116628716|ref|YP_813888.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238853022|ref|ZP_04643417.1| type III restriction protein, res subunit [Lactobacillus gasseri
           202-4]
 gi|116094298|gb|ABJ59450.1| DNA or RNA helicase of superfamily II [Lactobacillus gasseri ATCC
           33323]
 gi|238834360|gb|EEQ26602.1| type III restriction protein, res subunit [Lactobacillus gasseri
           202-4]
          Length = 949

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 7/124 (5%)

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRM--AEDLTEYLYERNIRVRYMHSEVKTLER 621
           AR +VE V  +++     G +    V   R   A +L +   +     R + +E    +R
Sbjct: 422 ARKRVEYVLKQLDYYGYCGEKAKGLVFCSRQEEARELAKLFSQTGHPSRALTNEDSQKQR 481

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           IE+   L  G+ + +  ++L  EG+DIP    + +L        +S    IQ +GR  R 
Sbjct: 482 IEVTHQLENGELEYIFTVDLFNEGIDIPSLNQIVMLRNT-----QSSIVFIQQLGRGLRK 536

Query: 682 VNSK 685
              K
Sbjct: 537 FPGK 540


>gi|328957296|ref|YP_004374682.1| primosome assembly protein PriA [Carnobacterium sp. 17-4]
 gi|328673620|gb|AEB29666.1| primosome assembly protein PriA [Carnobacterium sp. 17-4]
          Length = 804

 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKT-FTMAKVIEAMQ 193
           KD TF +    +  +  Q  AI  +LK +   R +V LL GVTGSGKT   +  + + +Q
Sbjct: 256 KDKTF-KKTVSFQLNEGQQNAIQPILKAVTEERTEVFLLKGVTGSGKTEIYLQTIAQTLQ 314

Query: 194 --RPAIVMAPNKILAAQLYSEFKNFF 217
             + A+++ P   L  Q+ + FK  F
Sbjct: 315 NNKSALMLVPEIALTPQMVNHFKGRF 340



 Score = 37.4 bits (85), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
           G+ D+L+G  ++ +GLD P   LV +L+AD    L       R+   L Q  GRA R
Sbjct: 605 GEADILLGTQMIAKGLDFPNITLVGVLNADTGLGLPDFRASERTFQLLTQVSGRAGR 661


>gi|317401375|gb|EFV82010.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 591

 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR A+DL ++L ++      +H ++   +R   +  L+ G+  +LV  ++   G+D+  
Sbjct: 254 TKRGADDLADHLADQGFAAAALHGDMNQRQRTRTLSQLQRGQLRILVATDVAARGIDV-- 311

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            G+   ++ D           I   GRA RN
Sbjct: 312 QGISHAVNFDLPMQAEDYVHRIGRTGRAGRN 342


>gi|313202537|ref|YP_004041194.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312441853|gb|ADQ78209.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 408

 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 5/104 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            A Q+  ++++   +K   ++L +   +  + V  MHS++   +R  ++ + +  +  +L
Sbjct: 239 FAEQEATKVIIFSGSKLKVKELFKTFRQMGLSVGEMHSDLDQAQRDHVMHEFKNNRVSIL 298

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           V  +++  G+DI +  LV   D   +         +  IGR AR
Sbjct: 299 VATDIVSRGIDIDDISLVINYDVPHDA-----EDYVHRIGRTAR 337


>gi|310828885|ref|YP_003961242.1| ATP-dependent DNA helicase RecG [Eubacterium limosum KIST612]
 gi|308740619|gb|ADO38279.1| ATP-dependent DNA helicase RecG [Eubacterium limosum KIST612]
          Length = 683

 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
            Y    R+  ++S +   ++ +II      + D+LV  +++  G+D+P   ++ IL AD+
Sbjct: 500 FYGSRYRIACLYSRMSGEDKKQIIDAFNRCEIDLLVATSIIEVGIDVPNVSVITILSADR 559

Query: 662 EGFLRSKTSLIQTIGRAARNVN 683
            G     + L Q  GR  R ++
Sbjct: 560 FGL----SQLHQLRGRVGRGMH 577


>gi|307269754|ref|ZP_07551084.1| type III restriction enzyme, res subunit [Enterococcus faecalis
           TX4248]
 gi|306513864|gb|EFM82466.1| type III restriction enzyme, res subunit [Enterococcus faecalis
           TX4248]
          Length = 1567

 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 20/138 (14%)

Query: 590 LTKRMAEDLTEYL-----YERNIRVRYMHSEVKTLERIEII----RDLRLGKFDVLVGIN 640
           ++ +  E + EYL      +++I VR++   + TLE+ E +     D    +  VL  + 
Sbjct: 487 ISSQFNEVVNEYLEGNETIQQSINVRHVDGAMNTLEKKEALDWLSEDFAEDETRVLSNVK 546

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            L EG+D+P    V  L   K     S+  ++Q +GR  R    K   Y       + + 
Sbjct: 547 FLTEGIDVPNLDAVIFLAPKK-----SQVDIVQAVGRIMRKFKDKEYGYI-----ILPIV 596

Query: 701 IDETTRRREKQLEHNKKH 718
           I E T   E  L++NKK+
Sbjct: 597 IPEGT-TPESILDNNKKY 613


>gi|253578452|ref|ZP_04855724.1| DNA/RNA helicase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850770|gb|EES78728.1| DNA/RNA helicase [Ruminococcus sp. 5_1_39BFAA]
          Length = 831

 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 8/101 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVK---TLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           +++ AE++ +   +R I    ++S      +++R E I  L+ G+  V+  +++  EG+D
Sbjct: 458 SRKHAEEMAKEFGKRGIPSAAVYSNADGEFSMDRAEAIEKLKNGEIKVIFSVDMFNEGVD 517

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           IP   +V  L   +     S    +Q +GR  R    K  L
Sbjct: 518 IPSVDMVMFLRPTE-----SPVVFLQQLGRGLRRSKGKEYL 553


>gi|167906775|ref|ZP_02493980.1| ATP-dependent DNA helicase [Burkholderia pseudomallei NCTC 13177]
          Length = 615

 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 557 PPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYM 612
           PPV +    A    E +YD I   A      L+ V T+RMAE    +L +R     +   
Sbjct: 256 PPVPLGPVMANDVWERLYDRIAELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAH 315

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R +  + L+ GK  +LV    L  G+DI +  LV  L     G  R     +
Sbjct: 316 HGSLAKEHRFDAEQRLKHGKLKLLVATASLELGIDIGDVELVCQL-----GSPRGIAPFL 370

Query: 673 QTIGRAARNVNS 684
           Q +GR+  ++  
Sbjct: 371 QRVGRSGHHIGG 382


>gi|16265991|gb|AAL16699.1|AF358708_2 excinuclease ABC subunit B [Helicobacter hepaticus]
          Length = 39

 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 24/32 (75%)

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           LKS   +MH AA  L FEEAAR+RDEI R+++
Sbjct: 7   LKSSILKMHQAAKALEFEEAARLRDEIARIRT 38


>gi|87302807|ref|ZP_01085618.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 5701]
 gi|87282690|gb|EAQ74648.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 5701]
          Length = 862

 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 35/190 (18%)

Query: 521 LRPTTIVVSATP----------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART-QVE 569
           L+P  + ++ATP          G  E+ Q  G+       P G    P+  R  R  Q +
Sbjct: 583 LQPHLLTMTATPIPRTLALSVHGDLEVSQIDGL-------PPGRT--PIRTRLLRGGQRQ 633

Query: 570 DVYDEINLAAQQGLRILLTV--------LTKRMAEDLTEYLYER---NIRVRYMHSEVKT 618
           + Y+ I      G R  + +        L  R A  + + L E    ++RV  +H  + +
Sbjct: 634 EAYELIRAEVALGQRAYVVLPLVEESENLDLRSAVTVHQQLQEEIFPDLRVGLLHGRMPS 693

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
             + E I     G  DVLV   ++  G+D+PE  ++ I  A++ G       L Q  GR 
Sbjct: 694 PRKQEAINAFASGHCDVLVSTTVVEVGVDVPEASVMVIEHAERFGL----AQLHQLRGRV 749

Query: 679 ARNVNSKVIL 688
            R   +   L
Sbjct: 750 GRGAAASHCL 759


>gi|259503545|ref|ZP_05746447.1| DNA replication factor Y [Lactobacillus antri DSM 16041]
 gi|259168623|gb|EEW53118.1| DNA replication factor Y [Lactobacillus antri DSM 16041]
          Length = 809

 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLL-GVTGSGKTFTMAKVIE---AMQRPAIVMAPNKIL 205
           + DQ  A+  +   +HSR+    LL GVTGSGKT    + I    A  R A+++ P   L
Sbjct: 274 NADQQRAVDAIGAQVHSRQATTFLLQGVTGSGKTEVYLQAIAQALAEGRTALMLVPEISL 333

Query: 206 AAQLYSEFKNFF 217
             Q+ + F+  F
Sbjct: 334 TPQIVNRFRRRF 345


>gi|259145479|emb|CAY78743.1| Prp28p [Saccharomyces cerevisiae EC1118]
          Length = 588

 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 585 ILLTVLTKRMAEDLTE-YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           I++ +  K+ A+ L E +  E N++V  +H      +R   ++  R  K  +++  N+  
Sbjct: 439 IIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIATNVAA 498

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDIP   LV      K+         I  IGR  R  N
Sbjct: 499 RGLDIPNVSLVVNFQISKK-----MDDYIHRIGRTGRAAN 533


>gi|237722744|ref|ZP_04553225.1| type III restriction enzyme [Bacteroides sp. 2_2_4]
 gi|229448554|gb|EEO54345.1| type III restriction enzyme [Bacteroides sp. 2_2_4]
          Length = 1071

 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 15/122 (12%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V ++  R+ +E+ YD I +A            TK+ A+++ E +Y++   +  +      
Sbjct: 331 VAVKQLRSDMENGYDHILMARCS---------TKQRAKEVME-IYQQYSDLNPVMVFSSM 380

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
             +  I+ +++  K  ++V +N+L EG D+PE  + AI DA +     S    +Q IGR 
Sbjct: 381 PNQKSILNNIKDKKHKIIVCVNMLGEGFDMPELKIAAIHDAKQ-----SLPITLQFIGRF 435

Query: 679 AR 680
            R
Sbjct: 436 TR 437


>gi|283797696|ref|ZP_06346849.1| phenylalanyl-tRNA synthetase, beta subunit [Clostridium sp. M62/1]
 gi|291074590|gb|EFE11954.1| phenylalanyl-tRNA synthetase, beta subunit [Clostridium sp. M62/1]
          Length = 815

 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 90  QTREISEQTMTPSVQALARLIQSDNPLLKNGKIW--TPHR------SWSINNHSKDITFF 141
           ++ ++ ++ + P    L R++   NPL ++  I   TP        S + N  +KD+  +
Sbjct: 530 ESPKVFDRLLIPEDSTLRRVVTISNPLGEDFSIMRTTPLNGMLTSLSTNYNRRNKDVKLY 589

Query: 142 QMQTDYHPSGDQPAA--IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++ T Y P+ D  +   + Q    +   E+ Q  LG+ G G  FTM  V+E
Sbjct: 590 ELATIYLPAEDSVSKEYLEQTGLPMLPDERQQFTLGMYGEGDFFTMKGVVE 640


>gi|188575689|ref|YP_001912618.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520141|gb|ACD58086.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 614

 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 8/124 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 231 MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 290

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  ++  IL+     K +  +I+
Sbjct: 291 GLDVERISHVLNYDIPYDTESYVHR----IGRTGRAGRTGDA--ILFVTLREKGMLRSIE 344

Query: 703 ETTR 706
             TR
Sbjct: 345 RATR 348


>gi|169145046|emb|CAQ08925.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
          Length = 652

 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 15/158 (9%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GL +    +  +++ D   +  S    +  IGR AR+ N K   Y      +
Sbjct: 394 IATDVASRGLGLYVEDVKFVINYD---YPNSSEDYVHRIGRTARSTN-KGTAYTFFTPGN 449

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           ++ A     R   K LE         Q++  K+M+++D
Sbjct: 450 LKQA-----RELIKVLEEAN------QAINPKLMQLVD 476


>gi|154509012|ref|ZP_02044654.1| hypothetical protein ACTODO_01529 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798646|gb|EDN81066.1| hypothetical protein ACTODO_01529 [Actinomyces odontolyticus ATCC
           17982]
          Length = 715

 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 14/116 (12%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER----NIRVRYMHSEVKTLERIEII 625
           D  D++  A ++G R L +V      E++  YL        I +  +     +  + +I+
Sbjct: 498 DASDDVADAEEEGARPLASV------EEVAAYLRSHPALSGIAIHELTGRTPSPVKAQIM 551

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            D   G+  +LV   ++  G+D+ E  L+ ILDA + G       L Q  GR  R+
Sbjct: 552 EDFSTGRAPLLVATTVIEVGVDVSEATLMVILDAQQFGL----AQLHQLRGRVGRS 603


>gi|118443735|ref|YP_878084.1| helicase [Clostridium novyi NT]
 gi|118134191|gb|ABK61235.1| helicase, putative [Clostridium novyi NT]
          Length = 964

 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 9/126 (7%)

Query: 567 QVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           +V+ + D++N    +G   R +   ++   A+ +TE   +R I+  ++  E    ER   
Sbjct: 434 RVDFIIDKMNFYGHEGEKCRCIGFCVSIEHAKYMTEEFNKRGIKSVHLTGENSPEEREGY 493

Query: 625 IRDLRLGKFD--VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           IR L   + D  V+  +++  EG+DIP   LV +L         S    IQ +GR  R  
Sbjct: 494 IRALESEEDDLEVIFTVDIFNEGVDIPSINLVLMLRP-----TNSPIVFIQQLGRGLRKH 548

Query: 683 NSKVIL 688
           + K  L
Sbjct: 549 SDKTFL 554


>gi|71666845|ref|XP_820378.1| eukaryotic initiation factor 4a [Trypanosoma cruzi strain CL
           Brener]
 gi|122045930|sp|Q4E162|IF4A_TRYCR RecName: Full=Probable eukaryotic initiation factor 4A;
           Short=eIF-4A; AltName: Full=ATP-dependent RNA helicase
           eIF4A
 gi|70885719|gb|EAN98527.1| eukaryotic initiation factor 4a, putative [Trypanosoma cruzi]
          Length = 404

 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y+ +++A       ++   T+R  + L + L + N  V  MHSE+   +R +++   R
Sbjct: 261 DLYETVSIAQS-----VIFANTRRKVDWLAQQLNQSNHTVSCMHSEMPKQDREKVMSTFR 315

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VLV  +L+  G+D+    +V   D   +KE +L
Sbjct: 316 NGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKESYL 353


>gi|323349261|gb|EGA83490.1| Prp28p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 588

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 585 ILLTVLTKRMAEDLTE-YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           I++ +  K+ A+ L E +  E N++V  +H      +R   ++  R  K  +++  N+  
Sbjct: 439 IIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIATNVAA 498

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDIP   LV      K+         I  IGR  R  N
Sbjct: 499 RGLDIPNVSLVVNFQISKK-----MDDYIHRIGRTGRAAN 533


>gi|323491514|ref|ZP_08096694.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
 gi|323314239|gb|EGA67323.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
          Length = 643

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 309 LDVPR--ITHVFNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQLRMLRTIERVT 364

Query: 706 RR--REKQLEHNKK 717
           +    E QL H  K
Sbjct: 365 KSSMEEIQLPHRDK 378


>gi|318059571|ref|ZP_07978294.1| ATP-dependent DNA helicase [Streptomyces sp. SA3_actG]
 gi|318075439|ref|ZP_07982771.1| ATP-dependent DNA helicase [Streptomyces sp. SA3_actF]
          Length = 721

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++  LT   A+++  YL +R   V       +  +R+E  + L   +   LV  + L  G
Sbjct: 255 IIYTLTVATADEVAAYLRQRGHEVTSYTGRTENADRLEAEQALLANRVKALVATSALGMG 314

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            D P+ G V  L A       S  +  Q +GRA R V    +L
Sbjct: 315 FDKPDLGFVVHLGAPS-----SPIAYYQQVGRAGRGVEHAEVL 352


>gi|315055381|ref|XP_003177065.1| ATP-dependent RNA helicase DBP8 [Arthroderma gypseum CBS 118893]
 gi|311338911|gb|EFQ98113.1| ATP-dependent RNA helicase DBP8 [Arthroderma gypseum CBS 118893]
          Length = 528

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 597 DLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           DL E +  R + RV  +HS +   ERI  +   R     +LV  ++   GLDIP  GLV 
Sbjct: 367 DLLERILRRLSHRVTSLHSLLPQSERIANLSRFRASAARLLVATDVAARGLDIPSVGLVI 426

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR 680
             D       R+    I  +GR AR
Sbjct: 427 NYDVP-----RNPDDYIHRVGRTAR 446


>gi|281183435|gb|ADA53586.1| RE22480p [Drosophila melanogaster]
          Length = 403

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++        ++   T+R  + LT+ +   N  V  MH +++  +R  I++  R
Sbjct: 262 DLYDTLSITQS-----VIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFR 316

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 317 SGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 354


>gi|296121629|ref|YP_003629407.1| primosomal protein N' [Planctomyces limnophilus DSM 3776]
 gi|296013969|gb|ADG67208.1| primosomal protein N' [Planctomyces limnophilus DSM 3776]
          Length = 768

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 4/75 (5%)

Query: 152 DQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAA 207
           +Q +A+ ++++ + S + +  LL GVTGSGKT    +VIE +    R AIV+ P   L  
Sbjct: 234 NQHSAVTRVIESLASGKSETFLLYGVTGSGKTEVYIRVIEEVVRYGRQAIVLVPEISLTP 293

Query: 208 QLYSEFKNFFPHNAV 222
           Q    F+  F   AV
Sbjct: 294 QTIRRFRKRFASVAV 308


>gi|164688647|ref|ZP_02212675.1| hypothetical protein CLOBAR_02292 [Clostridium bartlettii DSM
           16795]
 gi|164603060|gb|EDQ96525.1| hypothetical protein CLOBAR_02292 [Clostridium bartlettii DSM
           16795]
          Length = 686

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 7/91 (7%)

Query: 593 RMAEDLTEYLYER---NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           + AEDL + L E+   ++ V  +H ++K   + +I+ D +  K  +LV   ++  G+++P
Sbjct: 487 KAAEDLRDELKEKYFSDLNVEVLHGKMKPSLKDKIMEDFKNNKIQILVSTTVIEVGVNVP 546

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              L+ I +A++ G       L Q  GR  R
Sbjct: 547 NATLMIIENAERFGL----AQLHQLRGRVGR 573


>gi|323528073|ref|YP_004230225.1| DEAD/H associated domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323385075|gb|ADX57165.1| DEAD/H associated domain protein [Burkholderia sp. CCGE1001]
          Length = 1519

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 557 PPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYM 612
           PPV + +       E VYD +          L+ V T+RMAE    +L ER  +  V   
Sbjct: 285 PPVPLEAVMPNEVWERVYDRLAELVALHRTTLIFVNTRRMAERAARHLTERLGKDAVAAH 344

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R +  + L+ G   VL+    L  G+DI +  LV      + G  R+    +
Sbjct: 345 HGSLAKEHRFDAEQRLKRGDLRVLIATASLELGIDIGDVDLVC-----QMGSPRAIAPFL 399

Query: 673 QTIGRAARNVNS 684
           Q +GR+  +V  
Sbjct: 400 QRVGRSGHHVGG 411


>gi|256270725|gb|EEU05887.1| Prp28p [Saccharomyces cerevisiae JAY291]
          Length = 588

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 585 ILLTVLTKRMAEDLTE-YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           I++ +  K+ A+ L E +  E N++V  +H      +R   ++  R  K  +++  N+  
Sbjct: 439 IIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIATNVAA 498

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDIP   LV      K+         I  IGR  R  N
Sbjct: 499 RGLDIPNVSLVVNFQISKK-----MDDYIHRIGRTGRAAN 533


>gi|254585207|ref|XP_002498171.1| ZYRO0G03938p [Zygosaccharomyces rouxii]
 gi|238941065|emb|CAR29238.1| ZYRO0G03938p [Zygosaccharomyces rouxii]
          Length = 1006

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E+I+  + G+++VLV  ++  EGLDI E  L+   D        S    IQ +GR  R  
Sbjct: 558 EVIQKFKDGEYNVLVCTSIGEEGLDIGEVDLIICYDT-----TSSPIKNIQRMGRTGRKR 612

Query: 683 NSKVIL 688
           + ++IL
Sbjct: 613 DGRIIL 618


>gi|238650718|ref|YP_002916571.1| transcription-repair coupling factor [Rickettsia peacockii str.
           Rustic]
 gi|238624816|gb|ACR47522.1| transcription-repair coupling factor [Rickettsia peacockii str.
           Rustic]
          Length = 1122

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 23/187 (12%)

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYV 238
           F +    + +++  I+ A N+  A QLY +   F  +  + YF SY    YD+  P A +
Sbjct: 14  FAIDNFTKNLKQDFILSASNEEEALQLYKQALFFSSNENIYYFPSYNTIPYDHTSPNANI 73

Query: 239 P--RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
              R +T I K ++ N   +++  + T +LL +              +   + +S+  ++
Sbjct: 74  LSRRAETLI-KLTTNNSNSNKLLITHTANLLNK--------------LPPKDFFSKYFLK 118

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L         EL   LV+  + R    I  G F V G+ I+I  S  +  A+R+      
Sbjct: 119 LSPKMKFTTDELAMFLVENSFTRNASSIDAGEFAVRGEIIDIILSGPK--AYRIHFSWGY 176

Query: 357 IEEISEF 363
           IE I EF
Sbjct: 177 IESIKEF 183



 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           E++ +   GKFD+LV   ++  G+DI E   + I +AD  G     + L Q  GR  R
Sbjct: 834 EVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGL----SQLYQLRGRIGR 887


>gi|224089849|ref|XP_002308835.1| predicted protein [Populus trichocarpa]
 gi|222854811|gb|EEE92358.1| predicted protein [Populus trichocarpa]
          Length = 556

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G + ++   TKR A+ L  Y   +N +   +H ++    R   +   R G F++LV  +
Sbjct: 311 KGGKCIVFTETKRDADRLA-YAMAKNHKCEALHGDISQNVRERTLSGFREGHFNILVATD 369

Query: 641 LLREGLDIPECGLV 654
           +   GLD+P   L+
Sbjct: 370 VAARGLDVPNVDLI 383


>gi|170575198|ref|XP_001893141.1| DEAD/DEAH box helicase family protein [Brugia malayi]
 gi|158601006|gb|EDP38026.1| DEAD/DEAH box helicase family protein [Brugia malayi]
          Length = 830

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 12/120 (10%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V  K+MA+ +   L ++NI+   +  +    +R E + D R G   VLV  ++  
Sbjct: 680 RTLVFVQRKQMADVIALNLIQKNIQSSSISGDRMQKQREEALSDFRKGNIKVLVATDVCA 739

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            G+D+ +   V   D   +     + + +  IGR  R       L+    T  I LA D+
Sbjct: 740 RGIDVKDLQHVINYDMPSD-----RVTYVHRIGRTGR-------LHRGKATSFINLADDD 787


>gi|156555544|ref|XP_001603956.1| PREDICTED: similar to vasa-like protein [Nasonia vitripennis]
          Length = 732

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           IL+ V  K+ A+ +   L E N     +H +    ER E + D + GK  +LV   +   
Sbjct: 562 ILVFVSEKKTADFIAALLSEDNFPTTSIHGDRLQREREEALYDFKTGKMAILVATAVAAR 621

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           GLDI     V   D  KE         I  IGR  R  N
Sbjct: 622 GLDIKNVRHVINYDLPKE-----IDEYIHRIGRTGRVGN 655


>gi|148554435|ref|YP_001262017.1| DEAD/DEAH box helicase domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148499625|gb|ABQ67879.1| DEAD/DEAH box helicase domain protein [Sphingomonas wittichii RW1]
          Length = 686

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE L ++  ++   V  +H  +K  E+  ++ + + G+  VLV   ++  G+D+P   L+
Sbjct: 493 AESLRQWFGDK---VGVVHGRMKGPEKDAVMAEFQAGRIGVLVATTVIEVGVDVPNATLM 549

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            I  AD+ G       L Q  GR  R     V L
Sbjct: 550 IIEGADRFGL----AQLHQLRGRVGRGDQRSVCL 579


>gi|115702909|ref|XP_001200029.1| PREDICTED: similar to Likely ortholog of mouse D11lgp2, partial
           [Strongylocentrotus purpuratus]
 gi|115751739|ref|XP_795766.2| PREDICTED: similar to Likely ortholog of mouse D11lgp2, partial
           [Strongylocentrotus purpuratus]
          Length = 517

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 618 TLERIEI-IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           TL R E  + D +  + ++LV  ++++EGLDIP C ++      +  F+ ++   +Q+ G
Sbjct: 265 TLARQEAALNDFKSDQANLLVATDIVQEGLDIPACNVII-----RYNFVSNEIGTVQSKG 319

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           R AR   SK  L  +   KS     +   R+R +Q++
Sbjct: 320 R-ARKEGSKCFLIVE--DKSANKERERKNRKRVEQMD 353


>gi|78186810|ref|YP_374853.1| primosomal protein n [Chlorobium luteolum DSM 273]
 gi|78166712|gb|ABB23810.1| Primosomal protein n [Chlorobium luteolum DSM 273]
          Length = 810

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R+ E+L     E  I    + +         I+ + R GK  +L+G  ++ +GLD P 
Sbjct: 569 TERIEEELQSLFPEERILRMDVDTTTTKGSHGRILDEFRRGKARILLGTQMVAKGLDFPR 628

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
             LV +L AD    L       R+ + L Q  GRA R+
Sbjct: 629 VTLVGVLMADIGLNLPDFRASERTYSLLTQVAGRAGRS 666


>gi|89895420|ref|YP_518907.1| hypothetical protein DSY2674 [Desulfitobacterium hafniense Y51]
 gi|89334868|dbj|BAE84463.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 693

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N RV  +H  +K +++ EI+   + G+ D+LV   ++  G+++P   ++ I  A++ G  
Sbjct: 520 NRRVSLLHGRMKGVQKEEIMDAFQKGEVDILVSTTVVEVGVNVPNATVMVIEGAERFGL- 578

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R 
Sbjct: 579 ---AQLHQLRGRVGRG 591


>gi|89094261|ref|ZP_01167203.1| DEAD/DEAH box helicase-like [Oceanospirillum sp. MED92]
 gi|89081516|gb|EAR60746.1| DEAD/DEAH box helicase-like [Oceanospirillum sp. MED92]
          Length = 592

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 11/155 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK    +L E L  R      ++ ++    R   I  L+ G+ D+L+  +++  
Sbjct: 249 MLVFVRTKSATVELAEKLSARGYACEALNGDISQNLRERTIDKLKRGQIDILIATDVVAR 308

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R    + IL+     + +  +I+
Sbjct: 309 GLDVERISHVLNYDIPYDTESYIHR----IGRTGRAGR--EGEAILFVSPREQRMLKSIE 362

Query: 703 ETTRRREKQLEHNKKHNINPQSVK---EKIMEVID 734
             TR++ + ++     +IN + V+   ++I + ID
Sbjct: 363 RATRQKIESMQLPSTDDINEKRVQRFVDRISQTID 397


>gi|157825974|ref|YP_001493694.1| ATP-dependent DNA helicase RecG [Rickettsia akari str. Hartford]
 gi|157799932|gb|ABV75186.1| ATP-dependent DNA helicase RecG [Rickettsia akari str. Hartford]
          Length = 743

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +H ++K  ++ +I++  + G+  +LV   ++  G+D+PE  L+ I +A++ G       L
Sbjct: 573 IHGKMKNEQKEQIMKQFKAGEIKILVATTVIEVGIDVPEATLIIIENAERFGL----AQL 628

Query: 672 IQTIGRAAR 680
            Q  GR  R
Sbjct: 629 HQLRGRVGR 637


>gi|323499260|ref|ZP_08104237.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
 gi|323315648|gb|EGA68682.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
          Length = 646

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 309 LDVPR--ITHVFNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQLRMLRTIERVT 364

Query: 706 RR--REKQLEHNKK 717
           +    E QL H  K
Sbjct: 365 KSSMEEIQLPHRDK 378


>gi|325106020|ref|YP_004275674.1| transcription-repair coupling factor [Pedobacter saltans DSM 12145]
 gi|324974868|gb|ADY53852.1| transcription-repair coupling factor [Pedobacter saltans DSM 12145]
          Length = 1116

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+   H +++  +  +I+ D   GK+DVLV   ++  GLD+P    + I  A   G    
Sbjct: 796 RIAIAHGQLEGDKLEDIMLDFIEGKYDVLVATTIIEAGLDVPNANTILINHAHMFGL--- 852

Query: 668 KTSLIQTIGRAARNVNSKVILY 689
            + L Q  GR  R+ N K   Y
Sbjct: 853 -SDLHQMRGRVGRS-NKKAFCY 872


>gi|312876963|ref|ZP_07736938.1| primosomal protein N' [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796278|gb|EFR12632.1| primosomal protein N' [Caldicellulosiruptor lactoaceticus 6A]
          Length = 724

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 17/110 (15%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI--EIIRDLRLGKFDVLVGINLLREGLDI 648
           T+++ E++  Y   ++ RV  M S+  + +    ++++  R  + D+LVG  ++ +GL  
Sbjct: 488 TQKIEEEIKVYF--KDARVLRMDSDTTSKKDATQQLLKRFREKEADILVGTQMIAKGLHF 545

Query: 649 PECGLVAILDAD----------KEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           P+  LV ++DAD          +E   R+   L Q  GR+ R    KVI+
Sbjct: 546 PDLTLVGVIDADILLNMPDFRSRE---RTFQLLTQVAGRSGREKPGKVII 592


>gi|284032693|ref|YP_003382624.1| ATP-dependent DNA helicase RecG [Kribbella flavida DSM 17836]
 gi|283811986|gb|ADB33825.1| ATP-dependent DNA helicase RecG [Kribbella flavida DSM 17836]
          Length = 747

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R   +H  +   E+  ++     G+ DVL+   ++  G+D+P    + ++DAD+ G  
Sbjct: 563 DLRQAVLHGRLPAEEKDAVMSRFAAGEIDVLIATTVIEVGVDVPNASTMVVMDADRFGI- 621

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R 
Sbjct: 622 ---SQLHQLRGRVGRG 634


>gi|226307788|ref|YP_002767748.1| transcription-repair coupling factor [Rhodococcus erythropolis PR4]
 gi|226186905|dbj|BAH35009.1| transcription-repair coupling factor [Rhodococcus erythropolis PR4]
          Length = 1229

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 11/96 (11%)

Query: 273 IVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
           ++V++V  +      G+G +E      + L++G  ++   +L  LV+  Y R D+   RG
Sbjct: 149 VIVTTVRSLVQPMAPGLGEIEP-----ITLRVGTEIDFDSVLVRLVEMAYSRVDMVGKRG 203

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            F V G  +++F S   D   R+  +G+++ E+  F
Sbjct: 204 EFAVRGGILDLF-SPTADHPVRIEFWGDEVSELRYF 238


>gi|170758582|ref|YP_001787826.1| primosome assembly protein PriA [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405571|gb|ACA53982.1| primosomal protein N' [Clostridium botulinum A3 str. Loch Maree]
          Length = 735

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 10/111 (9%)

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169
           + S N L+K+G  +   ++  +N +++ I  +    +   +GDQ  A+ ++L   +S  K
Sbjct: 166 LSSINTLIKHG--FLIQKNQVVNRYNEKI--YGNYEEKILNGDQSLALYRIL---NSNRK 218

Query: 170 VQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFF 217
           + L+ GVTGSGKT     +++ +    + +I++ P   L  Q+   FK  F
Sbjct: 219 LFLIHGVTGSGKTEIYMHLVKKLIEKDKDSIILVPEISLTPQMVERFKGRF 269


>gi|170757558|ref|YP_001782054.1| primosome assembly protein PriA [Clostridium botulinum B1 str.
           Okra]
 gi|169122770|gb|ACA46606.1| primosomal protein N' [Clostridium botulinum B1 str. Okra]
          Length = 735

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 10/111 (9%)

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169
           + S N L+K+G  +   ++  +N +++ I  +    +   +GDQ  A+ ++L   +S  K
Sbjct: 166 LSSINTLIKHG--FLIQKNQVVNRYNEKI--YGNYEEKILNGDQSLALYRIL---NSNRK 218

Query: 170 VQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFF 217
           + L+ GVTGSGKT     +++ +    + +I++ P   L  Q+   FK  F
Sbjct: 219 LFLIHGVTGSGKTEIYMHLVKKLIEKDKDSIILVPEISLTPQMVERFKGRF 269


>gi|168180606|ref|ZP_02615270.1| primosomal protein N' [Clostridium botulinum NCTC 2916]
 gi|182668537|gb|EDT80516.1| primosomal protein N' [Clostridium botulinum NCTC 2916]
          Length = 735

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 10/111 (9%)

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169
           + S N L+K+G  +   ++  +N +++ I  +    +   +GDQ  A+ ++L   +S  K
Sbjct: 166 LSSINTLIKHG--FLIQKNQVVNRYNEKI--YGNYEEKILNGDQSLALYRIL---NSNRK 218

Query: 170 VQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFF 217
           + L+ GVTGSGKT     +++ +    + +I++ P   L  Q+   FK  F
Sbjct: 219 LFLIHGVTGSGKTEIYMHLVKKLIEKDKDSIILVPEISLTPQMVERFKGRF 269


>gi|58581173|ref|YP_200189.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623095|ref|YP_450467.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58425767|gb|AAW74804.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367035|dbj|BAE68193.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 634

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  ++  IL+     K +  +I+
Sbjct: 311 GLDVERISHVLNYDIPYDTESYVHR----IGRTGRAGRTGDA--ILFVTLREKGMLRSIE 364

Query: 703 ETTRRREKQLEHNKKHNIN 721
             TR+  ++++      +N
Sbjct: 365 RATRQPIEEMQLPSVDAVN 383


>gi|82915187|ref|XP_728999.1| ATP-dependent DNA helicase RecQ [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23485762|gb|EAA20564.1| ATP-dependent DNA helicase recQ-related [Plasmodium yoelii yoelii]
          Length = 1329

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V +K+  E++  +L+ER + V+  H+++   E+ E        +  +++       G
Sbjct: 285 LIYVNSKKDCENIYNFLHERGLLVKMYHADLSNEEKREAHEMFLKDEIQIVIATVAFGMG 344

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +D P+   +        GF RS  + +Q +GRA R
Sbjct: 345 IDKPDIRRII-----HYGFSRSLEAYVQQVGRAGR 374


>gi|332306962|ref|YP_004434813.1| transcription-repair coupling factor [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174291|gb|AEE23545.1| transcription-repair coupling factor [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1160

 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 55/306 (17%), Positives = 117/306 (38%), Gaps = 53/306 (17%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           GS     +A      + P +++  +   A +L  E   F     V+  V  +  ++   Y
Sbjct: 25  GSSLALAIANAAGKTKGPILMVTADTPSAMKLEKELSFFLQGKKVQ--VQLFPDWETLPY 82

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
               D +   +  I+++++ +     R     N   +V   + +  +   +  S+ ++ L
Sbjct: 83  ----DNFSPHQDIISQRLETL----YRLTQAENSVFIVPVNTLMLRMAPTDYLSKYLLFL 134

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           K+  +++     S L +  Y+  +  +    F + G  I++FP   +   +R+ MF N++
Sbjct: 135 KVNQTLDIDAFRSGLERSGYQHVNQVMGHSEFSIRGSIIDLFPMGSQQ-PFRIDMFDNEV 193

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           + I  F P + +    ++ IK+     +    PT    +K  +++               
Sbjct: 194 DSIRYFDPDSQRSGDKIDEIKLLPAREF----PTDQDGIKLFRQQY-------------- 235

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG----------EPPPTLFEYIPE 467
                       LE  +   S +S+  Y +   G  PG          E   TLF+Y+  
Sbjct: 236 ------------LEKFDANNSKESV--YYQVGKGMMPGGIEYYLPLFFEQSATLFDYLHP 281

Query: 468 DSLLFV 473
           D+LL +
Sbjct: 282 DTLLIM 287


>gi|300856701|ref|YP_003781685.1| putative RNA helicase [Clostridium ljungdahlii DSM 13528]
 gi|300436816|gb|ADK16583.1| predicted RNA helicase [Clostridium ljungdahlii DSM 13528]
          Length = 525

 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 6/100 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L E L  R   V  MH ++   +R+  +R  + G  + LV  ++   G+D+  
Sbjct: 252 TKRGVDELVEGLQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLEFLVATDVAARGIDVEN 311

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              V   D  ++       S +  IGR  R  N + I Y+
Sbjct: 312 VSHVINYDLPQD-----TESYVHRIGRTGR-ANKEGIAYS 345


>gi|296329235|ref|ZP_06871736.1| DNA helicase RecG [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296153591|gb|EFG94408.1| DNA helicase RecG [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 689

 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N ++  +H ++K  E+ E++   +  ++D+L+   ++  G+D+P   ++ I +A++ G  
Sbjct: 511 NKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFGL- 569

Query: 666 RSKTSLIQTIGRAAR 680
              ++L Q  GR  R
Sbjct: 570 ---SALHQLRGRVGR 581


>gi|291464069|gb|ADE05572.1| increased size exclusion limit 1b [Nicotiana benthamiana]
          Length = 548

 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK++ +D    L  R ++   +H ++  L R  I++  R G+  VL+   L   GLD+PE
Sbjct: 420 TKQL-KDAVFKLEARGMKAAELHGDLSKLVRSTILKKFRNGEVRVLLTNELSARGLDLPE 478

Query: 651 CGLVAIL 657
           C LV  L
Sbjct: 479 CDLVVNL 485


>gi|294637929|ref|ZP_06716198.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda ATCC 23685]
 gi|291088955|gb|EFE21516.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda ATCC 23685]
          Length = 429

 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 2/101 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   ED+  +L     RV  +  +V   +R+ I+ D   G  D+LV  ++  
Sbjct: 258 RCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVPQKKRLRILDDFTKGHIDILVATDVAA 317

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GL IP   +  + + D           I   GRA  + NS
Sbjct: 318 RGLHIP--AVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNS 356


>gi|189913047|ref|YP_001964936.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167777723|gb|ABZ96023.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 529

 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 6/93 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+ A+DL   L  +   V  +H ++   +R ++++ L  G+  +LV  ++   GLD+ +
Sbjct: 256 TKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVATDVAARGLDVKD 315

Query: 651 CGLVAI--LDADKEGFLRSKTSLIQTIGRAARN 681
             LV    L  D E +    T  I   GRA ++
Sbjct: 316 LSLVINYHLPFDSESY----THRIGRTGRAGKS 344


>gi|119944600|ref|YP_942280.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119863204|gb|ABM02681.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 403

 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ + TKR A  L   L +R I+   +HS      R +++ D + G+ + LV   +   G
Sbjct: 247 LIFIETKRGAAKLVSQLEKRGIKAEAIHSGRSQAVRTQLLADFKSGQLNFLVATGIAARG 306

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +DI     V   D   E         +  IGR  R
Sbjct: 307 IDIDSLARVVNYDLPDEA-----DDYVHRIGRTGR 336


>gi|333024013|ref|ZP_08452077.1| putative ATP-dependent DNA helicase [Streptomyces sp. Tu6071]
 gi|332743865|gb|EGJ74306.1| putative ATP-dependent DNA helicase [Streptomyces sp. Tu6071]
          Length = 721

 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++  LT   A+++  YL +R   V       +  +R+E  + L   +   LV  + L  G
Sbjct: 255 IIYTLTVATADEVAAYLRQRGHEVTSYTGRTENADRLEAEQALLANRVKALVATSALGMG 314

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            D P+ G V  L A       S  +  Q +GRA R V    +L
Sbjct: 315 FDKPDLGFVVHLGAPS-----SPIAYYQQVGRAGRGVEHAEVL 352


>gi|296156789|ref|ZP_06839627.1| DEAD/H associated domain protein [Burkholderia sp. Ch1-1]
 gi|295893388|gb|EFG73168.1| DEAD/H associated domain protein [Burkholderia sp. Ch1-1]
          Length = 1515

 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 9/132 (6%)

Query: 557 PPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYM 612
           PPV + +       E VYD +          L+ V T+RMAE    +L ER  +  V   
Sbjct: 292 PPVPLEAVMPNEVWERVYDRLAELVAMHRTTLIFVNTRRMAERAARHLTERLGKEAVAAH 351

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R +  + L+ G+  VL+    L  G+DI +  LV      + G  R+    +
Sbjct: 352 HGSLAKEYRFDAEQRLKRGELRVLIATASLELGIDIGDVDLVC-----QMGSPRAIAPFL 406

Query: 673 QTIGRAARNVNS 684
           Q +GR+  +V  
Sbjct: 407 QRVGRSGHHVGG 418


>gi|302656972|ref|XP_003020220.1| ATP-dependent RNA helicase, putative [Trichophyton verrucosum HKI
           0517]
 gi|291184030|gb|EFE39602.1| ATP-dependent RNA helicase, putative [Trichophyton verrucosum HKI
           0517]
          Length = 528

 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 597 DLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           DL E +  R + RV  +HS +   ER+  +   R     +LV  ++   GLDIP  GLV 
Sbjct: 367 DLLERILRRLSHRVTSLHSLLPQSERVANLSRFRASAARLLVATDVAARGLDIPSVGLVI 426

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR 680
             D       R+    I  +GR AR
Sbjct: 427 NYDVP-----RNPDDYIHRVGRTAR 446


>gi|257457388|ref|ZP_05622559.1| transcription-repair coupling factor [Treponema vincentii ATCC
           35580]
 gi|257445310|gb|EEV20382.1| transcription-repair coupling factor [Treponema vincentii ATCC
           35580]
          Length = 1154

 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H ++   E  +I R   +G F VL+   ++  G+DIP    + I  AD  G     + L 
Sbjct: 856 HGQMSATELEDIFRRFNMGGFHVLIATTIIENGIDIPNANTIIIDRADMYGV----SQLY 911

Query: 673 QTIGRAARN 681
           Q  GR  R+
Sbjct: 912 QLRGRVGRS 920


>gi|308080376|ref|NP_001183357.1| hypothetical protein LOC100501766 [Zea mays]
 gi|223949963|gb|ACN29065.1| unknown [Zea mays]
 gi|238010976|gb|ACR36523.1| unknown [Zea mays]
          Length = 483

 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G + ++   TKR A+ L+  +  R+ +   +H ++   +R   +   R G+F++L+  +
Sbjct: 209 KGGKCIVFTQTKRDADRLSHNM-SRSFQCEALHGDISQSQRERTLAGFRDGRFNILIATD 267

Query: 641 LLREGLDIPECGLV 654
           +   GLDIP   LV
Sbjct: 268 VAARGLDIPNVDLV 281


>gi|167011026|ref|ZP_02275957.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 847

 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKT-FTMAKVIEAMQ--RPAIVMAPN 202
           Y  + DQ +AI  + K + S + + +L+ G  G GKT  TM     A Q  +   ++ P 
Sbjct: 302 YEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEITMRAAFLATQNQKQVAILVPT 361

Query: 203 KILAAQLYSEFKNFFPHNAV 222
            ILA Q Y+ FK+ F + A+
Sbjct: 362 TILAQQHYNSFKDRFTNTAI 381


>gi|189500369|ref|YP_001959839.1| primosomal protein N' [Chlorobium phaeobacteroides BS1]
 gi|189495810|gb|ACE04358.1| primosomal protein N' [Chlorobium phaeobacteroides BS1]
          Length = 812

 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 150 SGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKIL 205
           +G Q +A+  L+ G  +      LL G+TGSGKT     + K + +  + AIV+ P   L
Sbjct: 277 TGAQQSALESLIAGFRTGTFSTSLLHGITGSGKTIIYIELLKEVLSAGKSAIVLVPEISL 336

Query: 206 AAQLYSEFKNFFPHN 220
             Q  S F+  F  N
Sbjct: 337 TPQTASRFRQHFGDN 351


>gi|223932610|ref|ZP_03624610.1| primosomal protein N' [Streptococcus suis 89/1591]
 gi|302023428|ref|ZP_07248639.1| primosome assembly protein PriA [Streptococcus suis 05HAS68]
 gi|330832246|ref|YP_004401071.1| primosomal protein N' [Streptococcus suis ST3]
 gi|223898720|gb|EEF65081.1| primosomal protein N' [Streptococcus suis 89/1591]
 gi|329306469|gb|AEB80885.1| primosomal protein N' [Streptococcus suis ST3]
          Length = 796

 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  ++L E L E  I    + +  K     +++     G+ D+L+G  ++ +GLD P 
Sbjct: 557 TQKAYDELQELLPEARILRMDVDTTKKKGAHEDLLERFGRGEADILLGTQMIAKGLDFPN 616

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
             LV +L+AD    L       R+   L Q  GRA R
Sbjct: 617 VTLVGVLNADTALNLPDFRSSERTFQLLTQVAGRAGR 653



 Score = 37.7 bits (86), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPN 202
           D +P  +Q  A+ +++  I    +  LL GVTGSGKT    +VI+    M + AI++ P 
Sbjct: 259 DLNP--EQAIAVREIVASIGQESQTFLLQGVTGSGKTEVYLQVIDRVLKMGKTAIMLVPE 316

Query: 203 KILAAQLYSEFKNFF 217
             L  Q+ + F + F
Sbjct: 317 ISLTPQMTNRFISRF 331


>gi|332637201|ref|ZP_08416064.1| exonuclease V subunit alpha [Weissella cibaria KACC 11862]
          Length = 731

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           + F +   D+ P G+Q A   Q L+  H   +V  LLGV GSGKTF +  +++  Q   +
Sbjct: 345 LPFREQVVDFKPLGEQ-ADFIQWLR--HEPRRVVALLGVGGSGKTFVLGNILQTDQ--VV 399

Query: 198 VMAP 201
            +AP
Sbjct: 400 ALAP 403


>gi|319950441|ref|ZP_08024356.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4]
 gi|319435905|gb|EFV91110.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4]
          Length = 679

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 6/138 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R      ++ ++    R   I  L+ G+ D+LV  ++   
Sbjct: 291 MIMFVRTKSATEELAERLRARGFSAAPINGDIPQNLRERTIEALKDGRTDILVATDVAAR 350

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+P    V   D           S I  IGR  R   S   +L+     + +   I+ 
Sbjct: 351 GLDVPRISHVVNYD-----IPHDTESYIHRIGRTGRAGRSGHALLFVTPRERRLLSQIER 405

Query: 704 TTRRREKQLEHNKKHNIN 721
            TR+   +++     ++N
Sbjct: 406 ATRQPLTEVQLPSVDDVN 423


>gi|302522315|ref|ZP_07274657.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78]
 gi|302431210|gb|EFL03026.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78]
          Length = 725

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++  LT   A+++  YL +R   V       +  +R+E  + L   +   LV  + L  G
Sbjct: 259 IIYTLTVATADEVAAYLRQRGHEVTSYTGRTENADRLEAEQALLANRVKALVATSALGMG 318

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            D P+ G V  L A       S  +  Q +GRA R V    +L
Sbjct: 319 FDKPDLGFVVHLGAPS-----SPIAYYQQVGRAGRGVEHAEVL 356


>gi|296169893|ref|ZP_06851505.1| transcription-repair coupling factor [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895449|gb|EFG75151.1| transcription-repair coupling factor [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 1201

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 18/200 (9%)

Query: 188 VIEAMQR--PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           V  A+ R  P +V+      A  L +E +  F  +AV  F S+ +    E   P  DT  
Sbjct: 34  VASALARLGPLLVVTATGREADDLTAELRGVF-GDAVAAFPSW-ETLPHERLSPGVDTVG 91

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG----IGSVESYSQMIVQLKIGD 301
            + + +     R+ H     L      +V +  S +      +G VE      V   +G 
Sbjct: 92  TRLTVLR----RLAHPEDARLGPPLRVVVTAVRSLLQPMTPQLGLVEP-----VTFSVGQ 142

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
            +  +E+++ LV+  Y R D+   RG F V G  +++FP   E    R+  +G+++ E+ 
Sbjct: 143 EMAFEEVVARLVELAYTRVDMVGRRGEFAVRGGILDVFPPTAEHPV-RIEFWGDEVSEMR 201

Query: 362 EFYPLTGQKIRNVETIKIYA 381
            F     + I  +E   + A
Sbjct: 202 MFAVADQRSIPEIEVETVIA 221


>gi|325983359|ref|YP_004295761.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325532878|gb|ADZ27599.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
          Length = 457

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 5/109 (4%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR A+ L + LY +      +H ++   ER   +  LR G   VLV  ++   G+D+ +
Sbjct: 254 TKRDADSLADTLYAQGYAAAALHGDMNQRERNRTLTRLRNGGLRVLVATDVAARGIDVAD 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             +  +++ D   F       +  IGR  R   + + +   ++  S+ L
Sbjct: 314 --ITHVINFDLPKF---AEDYVHRIGRTGRAGAAGIAVSFASVKDSMHL 357


>gi|240103224|ref|YP_002959533.1| Hef nuclease [Thermococcus gammatolerans EJ3]
 gi|239910778|gb|ACS33669.1| Hef, Helicase-associated endonuclease for fork-structured DNA (Hef)
           [Thermococcus gammatolerans EJ3]
          Length = 801

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 7/93 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ E++     G+F+VLV  ++  EGLD+PE  LV   +      + S    IQ  GR  
Sbjct: 404 EQKEVLDRFSRGEFNVLVATSVGEEGLDVPEVDLVVFYEP-----VPSAIRSIQRRGRTG 458

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           R+   KV++     T+    A   ++RR+EK +
Sbjct: 459 RHRPGKVVILMAKGTRD--EAYYWSSRRKEKGM 489


>gi|195126028|ref|XP_002007476.1| GI12369 [Drosophila mojavensis]
 gi|193919085|gb|EDW17952.1| GI12369 [Drosophila mojavensis]
          Length = 794

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 16/129 (12%)

Query: 567 QVEDVYDE-----------INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           Q+ DV DE             ++ +   + ++ V TK+  +++T  +  +  R   +H +
Sbjct: 364 QIVDVCDESEKIVKLIQLLTQISGENETKTIIFVETKKRVDEITRNISRQGWRACAIHGD 423

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
               ER  ++   R G+  +LV  ++   GLD+ +   V   D     +  +    +  I
Sbjct: 424 KSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYD-----YPSNSEDYVHRI 478

Query: 676 GRAARNVNS 684
           GR  R+ N+
Sbjct: 479 GRTGRSNNT 487


>gi|328697425|ref|XP_003240334.1| PREDICTED: ATP-dependent RNA helicase p62-like isoform 2
           [Acyrthosiphon pisum]
          Length = 516

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  + +T  +     R   +H +    ER  +++  R G+ ++LV  ++   GLD+ +
Sbjct: 358 TKRKVDTITRKITNMGARAVGIHGDKSQSERDHVLKQFRGGRANILVATDVAARGLDVDD 417

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
              V   D     +  +    I  IGR  R+
Sbjct: 418 VKFVINFD-----YPNNSEDYIHRIGRTGRS 443


>gi|332295132|ref|YP_004437055.1| transcription-repair coupling factor [Thermodesulfobium narugense
           DSM 14796]
 gi|332178235|gb|AEE13924.1| transcription-repair coupling factor [Thermodesulfobium narugense
           DSM 14796]
          Length = 1111

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 101/225 (44%), Gaps = 37/225 (16%)

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R  + R + ++ D  ++SSV  I      +++ +  ++  I   ++++EL++ L+ + Y
Sbjct: 94  FRIISQRIIAQKKDAPLISSVKAILSPKE-DNFQRFFLKKNI--EIDREELIN-LLSKNY 149

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R+ +  + G F V G  +++FP + ED   R+    N I  I  F P   + I+ V++ 
Sbjct: 150 TRKSLCELPGDFAVRGMLLDVFPFYSED-PIRLIFSDNTISAIKYFNPEDQRTIKEVDSF 208

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR--ITYDLEMLET 435
            +                   + E LK    E EK  +   A   E+R  I+ +++ +E 
Sbjct: 209 NL------------------IVIEALKFLPDEKEKIRKFFNALSKEERDIISEEIKNIEN 250

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE--DSLLFVDESHV 478
             +   IEN   YL  +N         ++I +  D++ FVD+  V
Sbjct: 251 DINFSGIEN---YLYFKND-------LQFILDDFDTIFFVDKDQV 285


>gi|325295172|ref|YP_004281686.1| transcription-repair coupling factor [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065620|gb|ADY73627.1| transcription-repair coupling factor [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 1059

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 9/105 (8%)

Query: 606 NIRVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           NI V  +H ++KT E+IE ++     G   +L+  +++  GLDIP    + ++ A++ G 
Sbjct: 770 NIPVDIVHGQMKT-EKIEKVMHKFFEGDIKILIATSIIESGLDIPSANTLIVIGAERFGL 828

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
               + L Q  GR  R +      Y   +T S      E  +R E
Sbjct: 829 ----SQLYQLRGRVGRGIEKG---YCYLLTSSKGKLTPEAVKRLE 866



 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKT-FTMAKVIEAMQ--RPA 196
           F+ +  Y P+ DQ  AI ++ K + S + + +L+ G  G GKT   M   ++A+   R  
Sbjct: 528 FERRFPYKPTPDQLKAIREVYKDMESEKPMDRLICGDVGFGKTEVAMRAAMKAVTDGRQV 587

Query: 197 IVMAPNKILAAQLYSEFKNFF 217
            V+ P  ILA Q Y  FK  F
Sbjct: 588 AVIVPTTILADQHYRTFKKRF 608


>gi|323127839|gb|ADX25136.1| primosome assembly protein PriA [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 794

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILA 206
           +  Q +A+  +++ I    K  L+ G+TGSGKT     +IEA+    + AIV+ P   L 
Sbjct: 259 NAQQASAVTDIVEQIGKPSKPFLIEGITGSGKTEVYLHIIEAVLKQDKTAIVLVPEISLT 318

Query: 207 AQLYSEFKNFF 217
            Q+ S F + F
Sbjct: 319 PQMTSRFISRF 329


>gi|302335847|ref|YP_003801054.1| ATP-dependent DNA helicase RecG [Olsenella uli DSM 7084]
 gi|301319687|gb|ADK68174.1| ATP-dependent DNA helicase RecG [Olsenella uli DSM 7084]
          Length = 720

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ E +   R G+ DVLV   ++  G+D+P   ++ + DAD+ G      +L Q  GR  
Sbjct: 550 EKDEAMERFRAGRTDVLVSTTVIEVGVDVPNATVMLVFDADRFGL----ATLHQLRGRVG 605

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           R  +  V+  +    K          RRR   LE
Sbjct: 606 RGDSPGVVYLSCAARKGTP------ARRRLAALE 633


>gi|255326979|ref|ZP_05368055.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
 gi|255296196|gb|EET75537.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
          Length = 565

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 33/65 (50%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TKR A  + E L  R      +H ++  + R + ++  R GK D+LV  ++  
Sbjct: 267 RTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTGKVDILVATDVAA 326

Query: 644 EGLDI 648
            G+D+
Sbjct: 327 RGIDV 331


>gi|302874747|ref|YP_003843380.1| primosomal protein N' [Clostridium cellulovorans 743B]
 gi|307690638|ref|ZP_07633084.1| primosome assembly protein PriA [Clostridium cellulovorans 743B]
 gi|302577604|gb|ADL51616.1| primosomal protein N' [Clostridium cellulovorans 743B]
          Length = 733

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           +HS EK  L+ G+TGSGKT     ++E    +++ +I++ P   L  Q+   FK  F  N
Sbjct: 211 LHSDEKKFLIHGITGSGKTEIYMNLVEKTMELEKDSIILVPEIALTPQMVERFKGRFG-N 269

Query: 221 AVEYFVS 227
            +  F S
Sbjct: 270 KIAVFHS 276


>gi|256821317|ref|YP_003145280.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256794856|gb|ACV25512.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 434

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 4/127 (3%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V T+R A  L+  L +R I+   +H       R   + + + GK  VLV  ++  
Sbjct: 245 QLLVFVRTRRGANKLSVDLEKRGIKATAIHGGKSQGARNRALSEFKSGKVTVLVATDVAA 304

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI--TKSIQLAI 701
            GLDI +  LV  ++ D           I   GRA     +  ++ AD +   ++IQ  I
Sbjct: 305 RGLDIEQMPLV--INYDLPNVAEDYVHRIGRTGRAGEKGTAISLVSADEVDDLRAIQDLI 362

Query: 702 DETTRRR 708
            +   RR
Sbjct: 363 RKPLERR 369


>gi|254505608|ref|ZP_05117754.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
 gi|219551261|gb|EED28240.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
          Length = 647

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 309 LDVPR--ITHVFNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQLRMLRTIERVT 364

Query: 706 RR--REKQLEHNKK 717
           +    E QL H  K
Sbjct: 365 KSSMEEIQLPHRDK 378


>gi|73965223|ref|XP_861654.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 7 [Canis
           familiaris]
          Length = 552

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 281 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 340

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 341 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 376


>gi|118374919|ref|XP_001020647.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89302414|gb|EAS00402.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 396

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L+  + E+N  +  +H E+   ER +I++D R G++ VLV  ++   GLD+ +  +V   
Sbjct: 278 LSGKMREQNFSLCSIHGELNQKERDKIMQDFRNGEYRVLVATDIWGRGLDVQQVSVVINY 337

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
           D        ++   I  IGR+ R
Sbjct: 338 DLPT-----NRELYIHRIGRSGR 355


>gi|319783816|ref|YP_004143292.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169704|gb|ADV13242.1| transcription-repair coupling factor [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 1165

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 8/107 (7%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           ++V   H ++   E  +I+     G++DVL+   ++  GLDIP    + I  AD  G   
Sbjct: 854 LKVAVAHGQMPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTLIIHRADMFGL-- 911

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
             + L Q  GR  R   SKV  YA   T      + +T  RR K L+
Sbjct: 912 --SQLYQLRGRVGR---SKVRAYA-LFTLPANRKLTDTAERRLKVLQ 952


>gi|312083163|ref|XP_003143746.1| RNA-dependent helicase [Loa loa]
 gi|307761088|gb|EFO20322.1| RNA-dependent helicase [Loa loa]
          Length = 403

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR A+DLT ++         +H +    ER   + + R GK  +L+  ++  
Sbjct: 227 KTIIFVETKRKADDLTRWMRRDGWPALCIHGDKGQSERDWALSEFRSGKTPILLATDVAA 286

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     +  +    +  IGR  R
Sbjct: 287 RGLDVDDIKYVINFD-----YSNNSEDYVHRIGRTGR 318


>gi|307198933|gb|EFN79685.1| Probable ATP-dependent RNA helicase DDX52 [Harpegnathos saltator]
          Length = 452

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L   L    + V  +H++    +R   +R  R GK  +L+   L+  
Sbjct: 276 VLIFVQSKERAQELFNELIYDGVYVDVIHADRTVTQRDNTVRCFREGKIWMLICTELMGR 335

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+D     LV   D     F  S  S I  IGR  R
Sbjct: 336 GIDFIGVNLVVNYD-----FPSSAISYIHRIGRTGR 366


>gi|295107314|emb|CBL04857.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 445

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 12/110 (10%)

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           +EQ I P G +     +R            + LA +   R+++   TK  AE  T  L  
Sbjct: 250 IEQFIVPVGSMQKASLLR------------LLLAERGSKRVIVFTDTKTRAEICTGQLKR 297

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
              R   +HS+    +R   +     G  DVLV  ++L  G+D+P+   V
Sbjct: 298 AGFRAESIHSDKTQAQRKRALAAFSKGDVDVLVATDVLARGIDVPDIAYV 347


>gi|257793013|ref|YP_003186412.1| type III restriction protein res subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479705|gb|ACV60023.1| type III restriction protein res subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 581

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G + L+  +  + A  L E   +R I    +   +K  ER  I++     +  VLV   +
Sbjct: 238 GRKCLVFAVDVKHAHALAERFQKRGIACAAVDGAMKAEERAAILQAFAENRLCVLVNCQI 297

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           L EG D P+   V I         RS+   +Q +GRA R
Sbjct: 298 LTEGYDQPDVDCVVIARPT-----RSQALYVQMVGRALR 331


>gi|251789258|ref|YP_003003979.1| transcription-repair coupling factor [Dickeya zeae Ech1591]
 gi|247537879|gb|ACT06500.1| transcription-repair coupling factor [Dickeya zeae Ech1591]
          Length = 1150

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 60/303 (19%), Positives = 120/303 (39%), Gaps = 38/303 (12%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
           Q LLG +TG+      A+++E      +++ P+   A +L  E + F             
Sbjct: 17  QRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQQF------------- 63

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
              QP   +P  +T      S +++I   R S    L       ++  V+ +       +
Sbjct: 64  -TGQPVITLPDWETLPYDSFSPHQEIISARLSTLYQLPSLTRGTLILPVNTLMQKVCPHA 122

Query: 290 YSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +     + LK G  + +  L + L +  Y+  D  +  G F   G  +++FP   E+  +
Sbjct: 123 FLHGHALMLKKGQRLSRDTLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEE-PF 181

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F ++I+ +  F   T + +  VE I +     + T +  +       +E+  +R  
Sbjct: 182 RIDFFDDEIDSLRLFDADTQRTLNEVEHIYLLPAREFPTDKNAIELFRSQWREQFDVR-- 239

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
                    +A+ + Q++        + G+  +   Y + L      +P P LF Y+P  
Sbjct: 240 --------RDAEHIYQQV--------SKGTLPAGIEYWQPLFF---SQPLPALFSYLPSG 280

Query: 469 SLL 471
           +LL
Sbjct: 281 TLL 283


>gi|218289479|ref|ZP_03493707.1| type III restriction protein res subunit [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240347|gb|EED07529.1| type III restriction protein res subunit [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 581

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G + L+  +  + A  L E   +R I    +   +K  ER  I++     +  VLV   +
Sbjct: 238 GRKCLVFAVDVKHARALAERFQKRGIACAAVDGAMKAEERAAILQAFAENRLRVLVNCQI 297

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           L EG D P+   V I         RS+   +Q +GRA R
Sbjct: 298 LTEGYDQPDVDCVVIARPT-----RSQALYVQMVGRALR 331


>gi|209545470|ref|YP_002277699.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533147|gb|ACI53084.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 390

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           + G R ++   TK+ A+ L   L    +    +H +   + R   + D R G+  VLV  
Sbjct: 259 EAGGRTMVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFRRGRLLVLVAT 318

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +++  G+D+ +  LV   D  ++       + I  IGR AR
Sbjct: 319 DVMARGIDVEDVALVVNFDIPEQ-----PETYIHRIGRTAR 354


>gi|126437189|ref|YP_001072880.1| transcription-repair coupling factor [Mycobacterium sp. JLS]
 gi|126236989|gb|ABO00390.1| transcription-repair coupling factor [Mycobacterium sp. JLS]
          Length = 1211

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           V L +G  ++   ++  LV   Y R D+   RG F V G  +++FP   E    RV  +G
Sbjct: 154 VTLTVGAEMDFDGVIKRLVDLAYTRCDMVAKRGEFAVRGGILDVFPPTAEHPV-RVEFWG 212

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYA 381
           ++I E+  F     + I  +E   + A
Sbjct: 213 DEISEMRMFAVADQRSIPEIEVDTVIA 239


>gi|82777273|ref|YP_403622.1| transcription-repair coupling factor [Shigella dysenteriae Sd197]
 gi|309788186|ref|ZP_07682792.1| transcription-repair coupling factor [Shigella dysenteriae 1617]
 gi|81241421|gb|ABB62131.1| transcription-repair coupling factor [Shigella dysenteriae Sd197]
 gi|308924038|gb|EFP69539.1| transcription-repair coupling factor [Shigella dysenteriae 1617]
          Length = 1148

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 118/309 (38%), Gaps = 50/309 (16%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH---NAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L+ R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMRR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   + + +  VE I +     +    P    A++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PIDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R       D E +    S  ++     Y       EP P LF
Sbjct: 231 WR----------DTFEVKR-------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273

Query: 463 EYIPEDSLL 471
            Y P ++LL
Sbjct: 274 SYFPANTLL 282



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ AE L E + E  I + +     + LER+  + D    +F+VLV   ++  G+DIP  
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERV--MNDFHHQRFNVLVCTTIIETGIDIPTA 880

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  AD  G       L Q  GR  R+
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRS 906


>gi|71280589|ref|YP_270076.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71146329|gb|AAZ26802.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 432

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V  K   E L E L +R I     H +    ER  ++   + G  +VL+  ++   G
Sbjct: 259 LIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGDIEVLIATDIAARG 318

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDI +  +V   +       RS +  +  IGR+ R
Sbjct: 319 LDIEKLPVVINFN-----LPRSPSDYMHRIGRSGR 348


>gi|19704981|ref|NP_602476.1| ATP-dependent DNA helicase recG [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19712887|gb|AAL93775.1| ATP-dependent DNA helicase recG [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 689

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N ++  +H ++K  E+ E++   +  ++D+L+   ++  G+D+P   ++ I +A++ G  
Sbjct: 511 NKKIGIIHGKMKAKEKDEVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFGL- 569

Query: 666 RSKTSLIQTIGRAAR 680
              ++L Q  GR  R
Sbjct: 570 ---SALHQLRGRVGR 581


>gi|109898045|ref|YP_661300.1| transcription-repair coupling factor [Pseudoalteromonas atlantica
           T6c]
 gi|109700326|gb|ABG40246.1| transcription-repair coupling factor [Pseudoalteromonas atlantica
           T6c]
          Length = 1160

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 56/297 (18%), Positives = 122/297 (41%), Gaps = 35/297 (11%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           GS    ++A      + P +++  +   A +L  E   F     V+  V  +  ++   Y
Sbjct: 25  GSSLAMSIANAAGKTKGPILLVTADTPSAMKLEKELSFFLQGKNVQ--VQLFPDWETLPY 82

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIVQ 296
               D +   +  I+++++ +       L +  +C+ +  V+ +   +   +  S+ ++ 
Sbjct: 83  ----DNFSPHQDIISQRLETLYR-----LTQAENCVFIVPVNTLMLRMAPTDYLSKYLLF 133

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK+  +++       L +  Y+  +  +    F + G  I++FP   +   +R+ +F ND
Sbjct: 134 LKVNQTLDIDAFRLGLERAGYQHVNQVMGHSEFSIRGSIIDLFPMGSQQ-PFRIDLFDND 192

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           ++ I  F P + +    ++ IK+     +    PT    +K  +++       LEK    
Sbjct: 193 VDSIRYFDPDSQRSGDKIDEIKLLPAREF----PTDQDGIKLFRQQY------LEK---- 238

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
            +A   ++ I Y +      G    IE Y          E   TLF+Y+  D+LL +
Sbjct: 239 FDANNSKESIYYQVGKGMMPG---GIEYYLPLFF-----EQSATLFDYLHPDTLLMM 287


>gi|330954492|gb|EGH54752.1| transcription-repair coupling factor [Pseudomonas syringae Cit 7]
          Length = 912

 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VL+   ++  G+D+P  
Sbjct: 588 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 645

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 646 NTIIIERADKFGL----AQLHQLRGRVGRS 671


>gi|319642970|ref|ZP_07997606.1| helicase [Bacteroides sp. 3_1_40A]
 gi|317385518|gb|EFV66461.1| helicase [Bacteroides sp. 3_1_40A]
          Length = 610

 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 13/166 (7%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           T +  +Y+ +   A  G + ++  ++   A  +  Y     +    + S    LER E++
Sbjct: 230 TGIRQLYESVRRYAA-GKKGIVYAVSIAHARQIAAYYSLHGVESVAIDSRTPALERKELV 288

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL---IQTIGRAARNV 682
            D R GK  VLV +++  EG   P+   V +         R   SL   +Q +GR  R  
Sbjct: 289 EDFRRGKISVLVNVDIFSEGFACPDVEFVQL--------ARPTLSLAKYLQQVGRGLRKS 340

Query: 683 NSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           ++K   +  D +       +    R  E   E     N  P++  E
Sbjct: 341 DNKESCVLIDNVGLHRIFGLPVRDRDWEAMFEGRMAGNAQPRTRME 386


>gi|288928387|ref|ZP_06422234.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288331221|gb|EFC69805.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 447

 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +ED++   +L      R+++    K+  +++   L    I    MHS++   ER +++  
Sbjct: 236 LEDIFKAGHLN-----RVIIFSGKKQKVKEINRALVRMKINSDEMHSDLSQEERDQVMFK 290

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
            + G  DVLV  ++L  G+DI +  +V   D   D E +       +  IGR AR
Sbjct: 291 FKSGATDVLVATDILSRGIDIDDITMVINYDVPHDVEDY-------VHRIGRTAR 338


>gi|195335297|ref|XP_002034311.1| GM19969 [Drosophila sechellia]
 gi|194126281|gb|EDW48324.1| GM19969 [Drosophila sechellia]
          Length = 1731

 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 23/119 (19%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+  R G  ++++  ++L EG+D+  C  V ILD      L++    +QT GR AR+  +
Sbjct: 459 IQKFREGNANLMICSSVLEEGIDVQACNHVIILDH-----LKTFNMYVQTKGR-ARSPEA 512

Query: 685 KVILYADTITKSIQLAIDETTRRREKQ----LEHNKKHNINPQSVKEKIMEVIDPILLE 739
           K +++              T R REK      ++   H+   + +KE+++E   P L E
Sbjct: 513 KFVVFT-------------TERDREKTCQQICQYRNAHDEIAEYLKERVLEQAMPELYE 558


>gi|168000763|ref|XP_001753085.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695784|gb|EDQ82126.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 638

 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D I + A+ G  I+ T  TKR A+D+   +    +    +H ++  L+R + +   R 
Sbjct: 263 LSDLITVHAKGGKTIVFT-QTKRDADDVAMAMGNL-VACGALHGDISQLQREKTLNAFRE 320

Query: 631 GKFDVLVGINLLREGLDIPECGLV 654
           G   VLV  ++   GLD+P   LV
Sbjct: 321 GNITVLVATDVAARGLDVPNVDLV 344


>gi|108801209|ref|YP_641406.1| transcription-repair coupling factor [Mycobacterium sp. MCS]
 gi|119870360|ref|YP_940312.1| transcription-repair coupling factor [Mycobacterium sp. KMS]
 gi|108771628|gb|ABG10350.1| transcription-repair coupling factor [Mycobacterium sp. MCS]
 gi|119696449|gb|ABL93522.1| transcription-repair coupling factor [Mycobacterium sp. KMS]
          Length = 1211

 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           V L +G  ++   ++  LV   Y R D+   RG F V G  +++FP   E    RV  +G
Sbjct: 154 VTLTVGAEMDFDGVIKRLVDLAYTRCDMVAKRGEFAVRGGILDVFPPTAEHPV-RVEFWG 212

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYA 381
           ++I E+  F     + I  +E   + A
Sbjct: 213 DEISEMRMFAVADQRSIPEIEVDTVIA 239


>gi|312881457|ref|ZP_07741251.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370879|gb|EFP98337.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 620

 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 309 LDVPR--ITHVFNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQLRMLRTIERVT 364

Query: 706 RR--REKQLEHNKK 717
           +    E QL H  K
Sbjct: 365 KSTMEEIQLPHRDK 378


>gi|292653988|ref|YP_003533886.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
 gi|291369858|gb|ADE02086.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
          Length = 466

 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           + KT ER EI+   R G++ +L    +L EG+D+P   +  IL         SK    Q 
Sbjct: 373 QTKTDERTEILERFRTGEYSMLATSQVLDEGIDVPAANVGIILSGSA-----SKRQYAQR 427

Query: 675 IGRAARNVNSK 685
           +GR  R  + +
Sbjct: 428 LGRILRPTDDR 438


>gi|260463949|ref|ZP_05812145.1| transcription-repair coupling factor [Mesorhizobium opportunistum
           WSM2075]
 gi|259030324|gb|EEW31604.1| transcription-repair coupling factor [Mesorhizobium opportunistum
           WSM2075]
          Length = 1165

 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 8/107 (7%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           ++V   H ++   E  +I+     G++DVL+   ++  GLDIP    + I  AD  G   
Sbjct: 854 LKVAVAHGQMPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTLIIHRADMFGL-- 911

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
             + L Q  GR  R   SKV  YA   T      + +T  RR K L+
Sbjct: 912 --SQLYQLRGRVGR---SKVRAYA-LFTLPANRKLTDTAERRLKVLQ 952


>gi|256827001|ref|YP_003150960.1| RecG-like helicase [Cryptobacterium curtum DSM 15641]
 gi|256583144|gb|ACU94278.1| RecG-like helicase [Cryptobacterium curtum DSM 15641]
          Length = 741

 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 19/128 (14%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H  +   E+   +     G+ DVLV   ++  G+D+P   ++ + DAD+ G     
Sbjct: 563 VGVLHGRMPATEKRASMERFAAGEVDVLVATTVIEVGIDVPNATVMIVEDADRFGL---- 618

Query: 669 TSLIQTIGRAAR-NVNSKVILYADT--------------ITKSIQLAIDETTRRREKQLE 713
           + L Q  GR  R +V  +V L + T                   +LA  + + RRE  + 
Sbjct: 619 SQLHQLRGRVGRGDVPGEVCLISSTKNPVALERLAAMERTENGFELAEFDLSLRREGDIL 678

Query: 714 HNKKHNIN 721
            N++H  +
Sbjct: 679 GNRQHGAS 686


>gi|308235054|ref|ZP_07665791.1| transcription-repair coupling factor [Gardnerella vaginalis ATCC
           14018]
 gi|311114598|ref|YP_003985819.1| transcription-repair coupling factor [Gardnerella vaginalis ATCC
           14019]
 gi|310946092|gb|ADP38796.1| transcription-repair coupling factor [Gardnerella vaginalis ATCC
           14019]
          Length = 1200

 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 15/176 (8%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFF---PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           P +++ P+   A+   S  ++++   P +  E  +  ++    E   PR DT   + S  
Sbjct: 74  PVVLITPSGRDASDAVSSIRDWYDGDPQDIAE--LEAWETLPHERLSPRADTVASRMSVF 131

Query: 252 NEQIDRMRH--SATRSLLERNDCIVVSSVSCIYGIGSVESYSQM-IVQLKIGDSVEQKEL 308
                R++H  S    +      +V+   S I  +  VE+ S +  +  + G  V     
Sbjct: 132 R----RLKHPQSGKNRMFSPIRVLVMPVRSIIQPV--VENISDVEPLVFECGKEVPIDSA 185

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           +  LV+  Y R ++ + RG F V G  I++F   +     R+  FG++I+ I +F+
Sbjct: 186 VKRLVENSYNRVELVMNRGEFAVRGGIIDVFSPTMNHPV-RIEFFGDEIDTIKQFH 240


>gi|225855741|ref|YP_002737252.1| transcription-repair coupling factor [Streptococcus pneumoniae
           P1031]
 gi|225724744|gb|ACO20596.1| transcription-repair coupling factor [Streptococcus pneumoniae
           P1031]
          Length = 1169

 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924



 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 128/309 (41%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  +++      A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+   Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYAQHAFIHQLKENGYRKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302


>gi|114570035|ref|YP_756715.1| transcription-repair coupling factor [Maricaulis maris MCS10]
 gi|114340497|gb|ABI65777.1| transcription-repair coupling factor [Maricaulis maris MCS10]
          Length = 1172

 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 17/168 (10%)

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQ------QGLRILLTVLTKRMAEDLTEYLYERNI 607
           +  PPV+  + RT V   +D +++         +G +    V      E+ T +L E   
Sbjct: 796 IATPPVDRLAVRTYVAP-FDPVSVREALLREKYRGGQAFFVVPRITDLEETTRFLRESVP 854

Query: 608 RVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            V ++  H ++   +  +I+     G++DVL+   ++  G+DIP    + I  AD+ G  
Sbjct: 855 EVSFVAAHGQMAASQLEDIMTAFYEGRYDVLLSTTIVESGIDIPTANTLIIHRADRFGL- 913

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
              + L Q  GR  R   SK   YA  +T  ++  I E+  +R K ++
Sbjct: 914 ---SQLYQLRGRVGR---SKTRAYA-YLTTPMRQKITESAEKRLKVMQ 954


>gi|15806915|ref|NP_295639.1| ATP-dependent DNA helicase RecG [Deinococcus radiodurans R1]
 gi|6459700|gb|AAF11469.1|AE002030_8 DNA helicase RecG [Deinococcus radiodurans R1]
          Length = 784

 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           ++A+DL   L E   R+  +H ++   E+  ++   R  +FD+LV   ++  G+D+P   
Sbjct: 591 QLADDLKTILPE--ARIDLLHGKMSAAEKDYVMERFRAHEFDILVSTTVIEVGVDVPNST 648

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
           ++ I +A++ G       L Q  GR  R 
Sbjct: 649 VMVIENAERFGL----AQLHQLRGRVGRG 673


>gi|324507937|gb|ADY43357.1| ATP-dependent RNA helicase DDX17 [Ascaris suum]
          Length = 625

 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++  Q   + L+ V TKR A+DLT  +         +H +    ER  ++ + + GK  +
Sbjct: 432 DIMNQPECKTLVFVETKRKADDLTRSMRRDGWPTLCIHGDKNQGERDWVLSEFKSGKTPI 491

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           L+  ++   GLD+ +   V   D     +  +    +  IGR AR
Sbjct: 492 LLATDVAARGLDVDDIKFVINYD-----YPNNSEDYVHRIGRTAR 531


>gi|300783675|ref|YP_003763966.1| ATP-dependent DNA helicase RecG [Amycolatopsis mediterranei U32]
 gi|299793189|gb|ADJ43564.1| ATP-dependent DNA helicase RecG [Amycolatopsis mediterranei U32]
          Length = 717

 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 83/175 (47%), Gaps = 20/175 (11%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           + +++  +H  +    +  ++R    G+ DVLV   ++  G+++P    + I+DAD+ G 
Sbjct: 532 QGLKIDVLHGRMPPDGKDAVMRAFSAGELDVLVATTVIEVGVNVPNATAMVIMDADRFGV 591

Query: 665 LRSKTSLIQTIGRAAR-NVNSKVILYADTI----TKSIQLAIDETTRRREKQ---LEHNK 716
               + L Q  GR  R +V    +L  +T+    T+    A++ TT   E     LE  +
Sbjct: 592 ----SQLHQLRGRVGRGSVPGLCLLVTETLDGTATRERLAAVESTTDGFELSRLDLELRR 647

Query: 717 KHNI--NPQSVKEKIMEVIDPILLEDAATTNISIDAQQL-----SLSKKKGKAHL 764
           + +I    QS K   ++++  +  ED    + ++ AQ+L      L+K +G A +
Sbjct: 648 EGDILGAAQSGKRSTLKLLSLLRDEDVIAASRAL-AQELVTQDPELTKYRGLAQM 701


>gi|254469399|ref|ZP_05082804.1| transcription-repair coupling factor [Pseudovibrio sp. JE062]
 gi|211961234|gb|EEA96429.1| transcription-repair coupling factor [Pseudovibrio sp. JE062]
          Length = 1162

 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 8/107 (7%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           ++V   H ++   E  +I+     GKFDVL+   ++  GLDIP    + +  +D  G   
Sbjct: 851 VKVVSAHGQMPPGELDDIMNAFYEGKFDVLLATTIVESGLDIPNANTLIVHRSDMFGL-- 908

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
               L Q  GR  R+      L+     K++      T  RR K L+
Sbjct: 909 --AQLYQIRGRVGRSKTRAYALFTVPANKTLT----ATAERRLKVLQ 949


>gi|55562721|gb|AAH86320.1| Ddx5 protein [Mus musculus]
          Length = 648

 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 376 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 435

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 436 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 471


>gi|23397305|gb|AAN31934.1| putative RNA helicase, DRH1 [Arabidopsis thaliana]
          Length = 423

 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I  + + G ++++   TKRM + LT  L  R      +H +    ER  ++   R G+
Sbjct: 199 EQILRSQEPGSKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGR 257

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             VLV  ++   GLD+ +  + A+++ D   F       +  IGR  R
Sbjct: 258 TPVLVATDVAARGLDVKD--IRAVVNYD---FPNGVEDYVHRIGRTGR 300


>gi|1054723|emb|CAA31405.1| vasa [Drosophila melanogaster]
          Length = 661

 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 38/74 (51%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I + ++Q    ++ V TKR A+ L  +L E+      +H +    +R + +RD + G   
Sbjct: 482 IEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMK 541

Query: 635 VLVGINLLREGLDI 648
           VL+  ++   GLDI
Sbjct: 542 VLIATSVASRGLDI 555


>gi|332158723|ref|YP_004424002.1| hypothetical protein PNA2_1083 [Pyrococcus sp. NA2]
 gi|331034186|gb|AEC51998.1| hypothetical protein PNA2_1083 [Pyrococcus sp. NA2]
          Length = 449

 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EI++  R GK+  +V   +L EG+D+P+  +  I+         S   L+Q +GR  
Sbjct: 358 ERNEILKKFRAGKYRAVVSSQVLDEGIDVPDASVGVIISGTG-----SPRELVQRLGRIL 412

Query: 680 RNV--NSKVILY 689
           R      K ILY
Sbjct: 413 RPAPGKEKAILY 424


>gi|301793331|emb|CBW35690.1| putative putative transcription-repair coupling factor
           [Streptococcus pneumoniae INV104]
          Length = 1169

 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924



 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 128/309 (41%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  +++      A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+   Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYAQHAFIHQLKENGYQKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302


>gi|261329404|emb|CBH12385.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 824

 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 23/113 (20%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN- 681
           ++I + R G   +LV  +L  EGLDI +C LV   D+       S  S IQ+ GRA R  
Sbjct: 472 DVIDEFRKGNTRLLVATSLAEEGLDIAQCNLVIRYDS-----CVSLRSFIQSRGRARRRN 526

Query: 682 -----------------VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
                            V  K +   D +   ++ AI+  TRR  +  E + K
Sbjct: 527 ALFIVFEHARREIKVAAVAMKAVRLQDFLVNVVRDAIEVGTRRAPRVWEESPK 579


>gi|227530549|ref|ZP_03960598.1| DNA helicase RecG [Lactobacillus vaginalis ATCC 49540]
 gi|227349555|gb|EEJ39846.1| DNA helicase RecG [Lactobacillus vaginalis ATCC 49540]
          Length = 679

 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 15/117 (12%)

Query: 595 AEDLTEYL---YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           A DL E L   ++ + +V  +H  +   ++  +++D + GK  VLV   ++  G+D P  
Sbjct: 486 ATDLYERLANYFQPDYQVGLLHGRLNGEKKDAVMKDFQDGKIQVLVSTTVVEVGVDNPNA 545

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITKSIQLAIDETTRR 707
            ++ I +AD+ G       L Q  GR  R    S  +L AD  T       DE T R
Sbjct: 546 TVMIIYNADRFGL----AQLHQLRGRVGRGERQSYCLLIADPKT-------DEGTAR 591


>gi|239826579|ref|YP_002949203.1| ATP-dependent DNA helicase RecG [Geobacillus sp. WCH70]
 gi|239806872|gb|ACS23937.1| ATP-dependent DNA helicase RecG [Geobacillus sp. WCH70]
          Length = 682

 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LT Y Y+    +  MH  + + E+ E+++     +  VLV   ++  G+++P   ++ I 
Sbjct: 494 LTHY-YKGKYHIGLMHGRLSSEEKEEVMKAFSENRVQVLVSTTVVEVGVNVPNATVMVIY 552

Query: 658 DADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691
           DA++ G       L Q  GR  R +  S  IL AD
Sbjct: 553 DAERFGL----AQLHQLRGRVGRGDEQSYCILIAD 583


>gi|167536684|ref|XP_001750013.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771523|gb|EDQ85188.1| predicted protein [Monosiga brevicollis MX1]
          Length = 341

 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + LTE + E N  V  MH ++   +R +++ + R
Sbjct: 240 DLYDTLTIT-----QAVIFCNTKQKVDWLTEKMREANFTVSSMHGDMLQKDRNDVMSEFR 294

Query: 630 LGKFDVLVGINLLREGLDIPECGLV 654
            G   VL+  ++   GLD+ +  LV
Sbjct: 295 AGSSRVLITTDVWARGLDVQQVSLV 319


>gi|154280200|ref|XP_001540913.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150412856|gb|EDN08243.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 999

 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 51/253 (20%), Positives = 97/253 (38%), Gaps = 36/253 (14%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM----------HSEVKT 618
           +D  D I      G RI++    +  AE++   L      +R               +  
Sbjct: 541 KDGDDSIGNRHPSGTRIMVFAHFRDSAEEIVRVLKRHGPMIRPHVFVGQAAAKGSGGMDQ 600

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
             ++EII   + G ++ +V  ++  EGLDI E  L+   D+       S   ++Q +GR 
Sbjct: 601 KTQLEIIEKFKEGTYNTIVATSVGEEGLDIGEVDLIVCYDSSA-----SPIRMLQRMGRT 655

Query: 679 ARNVNSKVILY------ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
            R     ++L        D+ TK+      +   + ++ +    +   +       +   
Sbjct: 656 GRKRRGNIVLLLMKGKEEDSFTKA-----KDNYEKMQRMIASGARFTFHDDKSPRILPRD 710

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHL-KSLRKQMHLAAD-NLNFEEAARI---- 786
           I P +  D    +I ++  Q  L +   +A + K L K+ H+       F +A+RI    
Sbjct: 711 IHPAV--DERQIDIPVENSQTDLPEPTKRARVPKRLPKKFHMPDGVETGFTKASRISGMK 768

Query: 787 --RDEIKRLKSSP 797
             R   + L+ SP
Sbjct: 769 VSRKATESLRKSP 781


>gi|158796|gb|AAA29013.1| Mab4611 antigen (vasa) [Drosophila melanogaster]
          Length = 648

 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 38/74 (51%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I + ++Q    ++ V TKR A+ L  +L E+      +H +    +R + +RD + G   
Sbjct: 469 IEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMK 528

Query: 635 VLVGINLLREGLDI 648
           VL+  ++   GLDI
Sbjct: 529 VLIATSVASRGLDI 542


>gi|78189306|ref|YP_379644.1| excinuclease ABC subunit C [Chlorobium chlorochromatii CaD3]
 gi|90111062|sp|Q3AQX4|UVRC_CHLCH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|78171505|gb|ABB28601.1| Excinuclease ABC subunit C [Chlorobium chlorochromatii CaD3]
          Length = 629

 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 753 LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + L K K  A ++SL + MHLAA  L FE+AA I+ +I+ LK
Sbjct: 211 IKLLKGKTSALIRSLTENMHLAATELRFEQAAEIKAQIESLK 252


>gi|332670950|ref|YP_004453958.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332339988|gb|AEE46571.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
          Length = 750

 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            + V  +H  +   ++   + D   G   VLV   ++  G+D+PE   + +LDAD+ G  
Sbjct: 566 GVAVGVLHGRMTPEDKDRALADFASGAVPVLVSTTVVEVGVDVPEATAMVVLDADRFGV- 624

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADT 692
              + L Q  GR  R     V L   T
Sbjct: 625 ---SQLHQLRGRIGRGSAPGVCLLVST 648


>gi|332199073|gb|EGJ13154.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA47901]
          Length = 1169

 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924



 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 128/309 (41%), Gaps = 31/309 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   R  +++      A  L S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVSDLISILGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   +A  P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDA--PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
            ++   IV++ +G+   Q   +  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 NAFKDSIVKISVGEEYAQHAFIHQLKENGYQKVTQVQTQGEFSLRGDILDIFEISQLE-- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++I+ I  F   T     N   + I+  S  +            +++++   
Sbjct: 190 PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQSALEKQISKT 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  + K              +Y  E+L +    QS  +  ++L+     +   T+F+YI 
Sbjct: 250 LSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL--CYDKTWTVFDYIE 293

Query: 467 EDSLLFVDE 475
           +D+ +F D+
Sbjct: 294 KDTPIFFDD 302


>gi|260892749|ref|YP_003238846.1| primosomal protein N' [Ammonifex degensii KC4]
 gi|260864890|gb|ACX51996.1| primosomal protein N' [Ammonifex degensii KC4]
          Length = 730

 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 14/138 (10%)

Query: 90  QTREISEQTMTPSVQALARL------IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQM 143
           Q R ++     P +  L+ L       Q+ + L + G +    R    +  +    F   
Sbjct: 133 QARALAVVVAFPGIDRLSLLREAGVKAQTLDALWRKGLV----RKEKASFKALPFPFTPA 188

Query: 144 QTDYHPSGDQPAAIAQLLKGIHSREKVQLLL-GVTGSGKT---FTMAKVIEAMQRPAIVM 199
           +T    +  Q  A++++ + ++ +    LLL GVTGSGKT      A +  A  R  IV+
Sbjct: 189 ETGLSLTPAQAKALSRVEEALNRKTPAVLLLHGVTGSGKTEVYLRAASLTLAQGRQVIVL 248

Query: 200 APNKILAAQLYSEFKNFF 217
            P  +LA QL  +F++ F
Sbjct: 249 VPEIVLAYQLVEQFRSRF 266


>gi|184154685|ref|YP_001843025.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
 gi|183226029|dbj|BAG26545.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
          Length = 492

 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++    R +I+R  + G  D+LV  ++   GLDI  
Sbjct: 248 TKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+  + + D         S +  IGR  R  +  V L
Sbjct: 306 SGVTHVYNYD---IPSDPDSYVHRIGRTGRAGHHGVSL 340


>gi|146318079|ref|YP_001197791.1| primosome assembly protein PriA [Streptococcus suis 05ZYH33]
 gi|146320258|ref|YP_001199969.1| primosome assembly protein PriA [Streptococcus suis 98HAH33]
 gi|145688885|gb|ABP89391.1| Primosomal protein N' (replication factor Y) - superfamily II
           helicase [Streptococcus suis 05ZYH33]
 gi|145691064|gb|ABP91569.1| Primosomal protein N' (replication factor Y) - superfamily II
           helicase [Streptococcus suis 98HAH33]
 gi|292557841|gb|ADE30842.1| Primosomal protein N [Streptococcus suis GZ1]
          Length = 812

 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  ++L E L E  I    + +  K     +++     G+ D+L+G  ++ +GLD P 
Sbjct: 573 TQKAYDELQELLPEARILRMDVDTTKKKGAHEDLLERFGRGEADILLGTQMIAKGLDFPN 632

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
             LV +L+AD    L       R+   L Q  GRA R
Sbjct: 633 VTLVGVLNADTALNLPDFRSSERTFQLLTQVAGRAGR 669



 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPN 202
           D +P  +Q  A+ +++  I    +  LL GVTGSGKT    +VI+    M + AI++ P 
Sbjct: 275 DLNP--EQAIAVREIVASIGQESQTFLLQGVTGSGKTEVYLQVIDRVLKMGKTAIMLVPE 332

Query: 203 KILAAQLYSEFKNFF 217
             L  Q+ + F + F
Sbjct: 333 ISLTPQMTNRFISRF 347


>gi|37520847|ref|NP_924224.1| ATP-dependent DNA helicase RecG [Gloeobacter violaceus PCC 7421]
 gi|35211842|dbj|BAC89219.1| DNA recombinase [Gloeobacter violaceus PCC 7421]
          Length = 811

 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E L E ++    R+  +H  +K+ E+  +I   R  + D+LV   ++  G+D+P   ++ 
Sbjct: 621 ERLKEKIFA-EFRLGLLHGRLKSEEKEAVIGAFRRHELDLLVSTTVVEVGVDVPNATVML 679

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKS 696
           I  A++ G       L Q  GR  R  N S  +L + T T+S
Sbjct: 680 IEHAERFGL----AQLHQLRGRVGRGANQSFCLLMSATKTES 717


>gi|297620477|ref|YP_003708614.1| putative transcription-repair-coupling factor [Waddlia chondrophila
           WSU 86-1044]
 gi|297375778|gb|ADI37608.1| putative transcription-repair-coupling factor [Waddlia chondrophila
           WSU 86-1044]
          Length = 1092

 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R+  +H ++K  E   +    + G+ D+L+   ++  G+DIP    + I  AD+ G    
Sbjct: 811 RIDIVHGQMKPAEIDTVFHHFKNGEIDILIATTIVESGIDIPNANTILIDRADRFGL--- 867

Query: 668 KTSLIQTIGRAAR 680
              L Q  GR  R
Sbjct: 868 -ADLYQLRGRVGR 879


>gi|255072011|ref|XP_002499680.1| predicted protein [Micromonas sp. RCC299]
 gi|226514942|gb|ACO60938.1| predicted protein [Micromonas sp. RCC299]
          Length = 442

 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           + + L     +V  +H E+K   R + ++D + GK  VLV  ++   GLDI   GL  ++
Sbjct: 272 VGDLLKRHGEKVCTLHGELKQERRDQALKDFKSGKSPVLVATDVAGRGLDI--TGLEHVV 329

Query: 658 DADKEGFLRSKTSLIQTIGRAAR 680
           + D  G +   T  +   GR+ R
Sbjct: 330 NWDMPGSVEQYTHRVGRAGRSGR 352


>gi|225873634|ref|YP_002755093.1| helicase, DEAD/DEAH domain protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225793049|gb|ACO33139.1| helicase, DEAD/DEAH domain protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 1468

 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 9/128 (7%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIR 626
           E VYD I    ++    L+ V T+RM E +   L ER     V   H  +    R+E  R
Sbjct: 276 ESVYDRIAELVREHRSTLVFVNTRRMVERIAFQLGERLGAENVAAHHGSLSRKLRLEAER 335

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA--RNVNS 684
            L+ G   VLV    L  G+DI    LV  +++      R+    +Q +GRA   R    
Sbjct: 336 RLKAGDIRVLVATASLELGIDIGAVDLVCQINST-----RAIAVAMQRVGRAGHWRGATP 390

Query: 685 KVILYADT 692
           K   +  T
Sbjct: 391 KGRFFVTT 398


>gi|194227730|ref|XP_001492319.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX53
           (DEAD box protein 53) (DEAD box protein CAGE)
           (Cancer-associated gene protein) (Cancer/testis antigen
           26) (CT26) [Equus caballus]
          Length = 624

 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           NLA +   + ++ V  K +A+DL+  L  + + V+ +H   +  +R + + D R G+  +
Sbjct: 459 NLAPED--KAIIFVSRKLVADDLSSDLSIQGVPVQSLHGNREQFDREQALDDFRSGRVKI 516

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691
           L+  +L   GLD+ +   V   D+ K   L      +   GRA +  V+  ++  AD
Sbjct: 517 LIATDLAARGLDVRDVTHVYNYDSPKN--LEEYVHRVGRTGRAGKTGVSVTLMTQAD 571


>gi|170748080|ref|YP_001754340.1| ATP-dependent DNA helicase RecG [Methylobacterium radiotolerans JCM
           2831]
 gi|170654602|gb|ACB23657.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 750

 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT----FTMAKVIEAMQRP 195
            Q    +  +G Q  A+A++   + + R  ++LL G  GSGKT      MA  +EA  R 
Sbjct: 317 LQAALPFALTGAQARAVAEIRADLAAPRRMLRLLQGDVGSGKTAVALLAMASAVEA-GRQ 375

Query: 196 AIVMAPNKILAAQLYSEFKNF 216
           A +MAP +ILA Q +   K  
Sbjct: 376 AALMAPTEILARQHFERLKPL 396


>gi|168333928|ref|ZP_02692160.1| ATP-dependent RNA helicase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 472

 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 10/115 (8%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+   TK+  +DL + L  R  +   +H ++K + R  ++   R G  D+L+  ++   
Sbjct: 170 MLVFCNTKKRVDDLCKDLMSRGYKAEALHGDMKQIHRDSVMNKFRRGIVDILIATDVAAR 229

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           G+DI +   V   D   D E +       +  IGR  R  N K   Y+    K I
Sbjct: 230 GIDIDDVDAVFNYDLPIDDEYY-------VHRIGRTGR-ANRKGTSYSFVCGKEI 276


>gi|297583985|ref|YP_003699765.1| primosomal protein N' [Bacillus selenitireducens MLS10]
 gi|297142442|gb|ADH99199.1| primosomal protein N' [Bacillus selenitireducens MLS10]
          Length = 808

 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGS 179
           K W   +  SIN        F+   +     +Q  A  +++  +H +R +  L+ GVTGS
Sbjct: 243 KGWVEKKEVSINRDPYSDRDFEKTHNRTLMPEQQEAFNRIVPAVHEARHEAFLIRGVTGS 302

Query: 180 GKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFF 217
           GKT    + IE +    + AI++ P   L  Q+ + FK  F
Sbjct: 303 GKTEIYLQTIEQVLLKGKEAIMLVPEISLTPQMVTRFKERF 343


>gi|153938732|ref|YP_001391791.1| ATP-dependent DNA helicase RecG [Clostridium botulinum F str.
           Langeland]
 gi|152934628|gb|ABS40126.1| ATP-dependent DNA helicase RecG [Clostridium botulinum F str.
           Langeland]
 gi|295319817|gb|ADG00195.1| ATP-dependent DNA helicase RecG [Clostridium botulinum F str.
           230613]
          Length = 679

 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y + + +  +H ++K  E+  I++D + GK   L+   ++  G+++P   L+ I +A++ 
Sbjct: 497 YFKEVEIAILHGKMKGKEKDTIMKDFKEGKIKALISTTVIEVGVNVPNATLMVIENAERF 556

Query: 663 GFLRSKTSLIQTIGRAAR 680
           G       L Q  GR  R
Sbjct: 557 GL----AQLHQLRGRVGR 570


>gi|148239657|ref|YP_001225044.1| ATP-dependent DNA helicase [Synechococcus sp. WH 7803]
 gi|147848196|emb|CAK23747.1| ATP-dependent DNA helicase [Synechococcus sp. WH 7803]
          Length = 843

 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +++V  +H  + ++++  +I+    G+  VLV   ++  G+D+PE  ++ I  AD+ G  
Sbjct: 662 DLKVGLLHGRLPSVDKQAVIQAFAKGETQVLVSTTVVEVGVDVPEASVMMIDHADRFGL- 720

Query: 666 RSKTSLIQTIGRAARN-VNSKVILYADT 692
                L Q  GR  R    S+ +L  D+
Sbjct: 721 ---AQLHQLRGRVGRGAAASRCLLINDS 745


>gi|147828502|emb|CAN77581.1| hypothetical protein VITISV_015347 [Vitis vinifera]
          Length = 786

 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G + ++   TKR A++++  L   +I    +H ++   +R   +   R GKF VLV  +
Sbjct: 402 KGGKTIVFTQTKRDADEVSMAL-TNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 460

Query: 641 LLREGLDIPECGL 653
           +   GLDIP   L
Sbjct: 461 VAARGLDIPNVDL 473


>gi|148997952|ref|ZP_01825465.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP11-BS70]
 gi|147755962|gb|EDK63005.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP11-BS70]
          Length = 1118

 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 799 IGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 854

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 855 STLYQLRGRVGR---SNRIAYA 873


>gi|308804011|ref|XP_003079318.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
 gi|116057773|emb|CAL53976.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
          Length = 683

 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           +++RT +  V D + + A+    I  T  TKR A++LT  L +R +    +H ++   +R
Sbjct: 256 QTSRTSI--VMDLVTVYAKDKKCICFT-QTKRAADELTAALGKR-VSCEVLHGDIAQAQR 311

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
              ++  R  +F VL+  ++   GLDI +  LV
Sbjct: 312 ERTLQRFRDNRFTVLIATDVAARGLDISDVDLV 344


>gi|332797925|ref|YP_004459425.1| nucleotide excision repair helicase, Xpb2 [Acidianus hospitalis W1]
 gi|332695660|gb|AEE95127.1| nucleotide excision repair helicase, Xpb2 [Acidianus hospitalis W1]
          Length = 449

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EI+R  + GK+ V+V  ++  EG+DIP+  +  +L     G   +   ++Q +GR  
Sbjct: 361 ERSEILRKFKEGKYKVIVASSVFDEGVDIPDANIGIVL-----GGYGTSRQMLQRLGRIL 415

Query: 680 R 680
           R
Sbjct: 416 R 416


>gi|302774092|ref|XP_002970463.1| hypothetical protein SELMODRAFT_441099 [Selaginella moellendorffii]
 gi|300161979|gb|EFJ28593.1| hypothetical protein SELMODRAFT_441099 [Selaginella moellendorffii]
          Length = 1198

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           + G +I++   TKRM + L   L  R+     +H +    ER  ++   + GK  VLV  
Sbjct: 423 EPGSKIIIFCSTKRMCDQLARSL-RRDFGAVAIHGDKSQGERDWVLSQFKAGKSPVLVAT 481

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++   GLDI +  +V   D     F       +  IGR  R
Sbjct: 482 DVAARGLDIKDIRVVINYD-----FPTGVEDYVHRIGRTGR 517


>gi|293389090|ref|ZP_06633562.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis S613]
 gi|291081558|gb|EFE18521.1| ATP-dependent DNA helicase RecG [Enterococcus faecalis S613]
          Length = 678

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 85/190 (44%), Gaps = 28/190 (14%)

Query: 521 LRPTTIVVSATPGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYD 573
           L+P  + ++ATP    L      E    II E    P G +  P+E R  R  Q++ V +
Sbjct: 400 LKPDVLFMTATPIPRTLAITAYGEMDVSIIDEM---PAGRI--PIETRWIRPPQLDTVLE 454

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDL---------TEYLYERNIRVRYMHSEVKTLERI 622
             E  LA      I+  ++ +  A D+          +  Y    +V  +H ++K  E+ 
Sbjct: 455 WMEKELARGHQAYIICPLIEESEALDVKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKD 514

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+++ +  +  +L    ++  G+++P   ++ I+DAD+ G       L Q  GR  R  
Sbjct: 515 DIMQEFKDNQLQLLFSTTVIEVGVNVPNATVMLIMDADRFGL----AQLHQLRGRVGRGS 570

Query: 683 N-SKVILYAD 691
           + S  IL A+
Sbjct: 571 SASYCILVAN 580


>gi|289166915|ref|YP_003445182.1| transcription-repair coupling factor [Streptococcus mitis B6]
 gi|288906480|emb|CBJ21310.1| transcription-repair coupling factor [Streptococcus mitis B6]
          Length = 1169

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y+H  +  ++    + D   G++D+LV   ++  G+DIP    + + +AD  G     
Sbjct: 850 VGYVHGRMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFVENADYMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|288553115|ref|YP_003425050.1| primosome assembly protein PriA [Bacillus pseudofirmus OF4]
 gi|288544275|gb|ADC48158.1| primosome assembly protein PriA [Bacillus pseudofirmus OF4]
          Length = 803

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 153 QPAAIAQLLKGIHSREKVQLLL-GVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQ 208
           Q A IA +LK + S      LL GVTGSGKT    + I+      + AIV+ P   L  Q
Sbjct: 270 QAAVIAPILKSLESEVHEPFLLHGVTGSGKTEIYLQAIDRTLKDGKEAIVLVPEIALTPQ 329

Query: 209 LYSEFKNFF 217
           + + FK  F
Sbjct: 330 MVNRFKGRF 338


>gi|284040349|ref|YP_003390279.1| transcription-repair coupling factor [Spirosoma linguale DSM 74]
 gi|283819642|gb|ADB41480.1| transcription-repair coupling factor [Spirosoma linguale DSM 74]
          Length = 1126

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 48/274 (17%), Positives = 117/274 (42%), Gaps = 21/274 (7%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G+ GS      + + +++    + +  ++  AA  +++ +N      + + +SY   YQ 
Sbjct: 47  GLVGSLDAVVASTIFKSVGGNHLYILTDRDEAAYFFNDLQNLLSREVLLFPMSYKKPYQY 106

Query: 235 EAYVPRTDTYIEKESSI--NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           E         IE  + +   E ++++  +    LL     +V    +    + +  S   
Sbjct: 107 EE--------IENANVLMRAEVLNKLNPAPKDGLL-----MVTYPEALSEKVINKRSLQA 153

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             + +++G+ ++   +   L   ++++ D     G F V G  I++F S   +  +R+ +
Sbjct: 154 NTLTIRVGEKLDTHFVSELLQTYEFEKTDFVYEAGQFSVRGGIIDVF-SFASEFPFRIDL 212

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG+++E I +F P +      V+ I +  N      + T  +   ++ E   +   ++E 
Sbjct: 213 FGDEVESIRKFNPESQLSTDAVDFINVIPNIQTKLVQETRESFFDFLPEATTIWAKDVEF 272

Query: 413 EGRLLEA--QRLEQRITYDLEMLETTGSCQSIEN 444
              ++E   ++ EQ       +LE++G  Q + +
Sbjct: 273 TLEIIEKNFEKAEQSFA---TVLESSGGIQIVSD 303



 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 10/107 (9%)

Query: 608 RVRYMHSEVKTLERIE-IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           R+   H ++   ER+E I+     G +DVL+  N++  GLDIP    + I +A   G   
Sbjct: 808 RIGVAHGQMDG-ERLERIMTRFIEGDYDVLISTNIIESGLDIPNANTILINNAHYFGL-- 864

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
             + L Q  GR  R+ N K   Y  T   S+  A     R+R + LE
Sbjct: 865 --SDLHQMRGRVGRS-NRKAFCYLLTPPPSVLTA---DARKRLQTLE 905


>gi|206579456|ref|YP_002237080.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae 342]
 gi|288934043|ref|YP_003438102.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|206568514|gb|ACI10290.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae 342]
 gi|288888772|gb|ADC57090.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
          Length = 443

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 575 INLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           I+L  Q +  R ++ V  +    +L   L+E  I   ++  E+  ++R E I+ L  G+ 
Sbjct: 240 IHLLKQPEATRSIVFVRKRERVHELAAKLHEAGINTCWLEGEMVQIKRNEAIKRLTDGRV 299

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +VL+  ++   G+DIP+   V   D       R+    +  IGR  R
Sbjct: 300 NVLIATDVAARGIDIPDVSHVFNFD-----MPRTADIYLHRIGRTGR 341


>gi|170046392|ref|XP_001850751.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
 gi|167869172|gb|EDS32555.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
          Length = 641

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L   L E       +H +    ER E +RD + GK  +L+  ++   G
Sbjct: 468 LVFVETKRNADYLASLLSETKFPTTSIHGDRLQREREEALRDFKSGKMYILIATSVAARG 527

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDI     V   D  K          +  IGR  R
Sbjct: 528 LDIRNVAHVINYDLPK-----GIDDYVHRIGRTGR 557


>gi|160896460|ref|YP_001562042.1| ATP-dependent DNA helicase RecG [Delftia acidovorans SPH-1]
 gi|160362044|gb|ABX33657.1| ATP-dependent DNA helicase RecG [Delftia acidovorans SPH-1]
          Length = 746

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 8/114 (7%)

Query: 601 YLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           YL E    + V  +HS + T E+  ++     G   VLV   ++  G+D+P   L+ I  
Sbjct: 559 YLSEMLPGVMVGLLHSRMPTAEKKAVMELFSAGVMGVLVSTTVIEVGVDVPNASLMVIEH 618

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           A++ G     + L Q  GR  R   +   +   ++  S +L   ET + R + +
Sbjct: 619 AERFGL----SQLHQLRGRVGRGAAASACVLLYSVGDSGRLG--ETAKDRLRAM 666


>gi|21673432|ref|NP_661497.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
 gi|21646533|gb|AAM71839.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
          Length = 657

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 8/158 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TK     L E L  R      ++ ++    R   I  L+ G  ++++  ++   
Sbjct: 269 IIIFVRTKTETVALAEKLQARGYAAAALNGDMVQSARERTIEQLKDGTLNIVIATDVAAR 328

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R+   + IL+     + +  AI+
Sbjct: 329 GLDVERISHVINYDIPTDTESYVHR----IGRTGRAGRS--GEAILFVSPRERGMLFAIE 382

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
             TR+R + +E      +N + + +    + D +  ED
Sbjct: 383 RATRKRIELMELPSTEIVNDKRIAKFKQRITDTVGAED 420


>gi|85711928|ref|ZP_01042983.1| DNA helicase RecJ [Idiomarina baltica OS145]
 gi|85694325|gb|EAQ32268.1| DNA helicase RecJ [Idiomarina baltica OS145]
          Length = 691

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)

Query: 589 VLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           VL  + AED    L E+   + V  +H  +K  ++  ++   + G+ D+LV   ++  G+
Sbjct: 496 VLECQAAEDTATELQEQLDGLTVGLVHGRMKADQKEAVMSRFKSGEIDLLVATTVIEVGV 555

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN--VNSKVILYADTITKS 696
           D+P   L+ I + ++ G       L Q  GR  R    +  V+LY   ++++
Sbjct: 556 DVPNSSLMIIENPERLGL----AQLHQLRGRVGRGSVASHCVLLYKTPLSRT 603


>gi|146297088|ref|YP_001180859.1| primosomal protein N' [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145410664|gb|ABP67668.1| replication restart DNA helicase PriA [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 723

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 11/107 (10%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI--EIIRDLRLGKFDVLVGINLLREGLDI 648
           T+R+ +++  Y   ++ RV  M  +  T +    EI+   +  + D+LVG  ++ +GL  
Sbjct: 487 TQRIEDEIKTYF--KDARVLRMDKDTTTRKDAVEEILSKFKSKEADILVGTQMVAKGLHF 544

Query: 649 PECGLVAILDAD---KEGFLRSKTSLIQTI----GRAARNVNSKVIL 688
           P+  LV +++AD        RSK    Q I    GRA R    +V++
Sbjct: 545 PDLTLVGVINADTILNMPDFRSKERTFQLITQVAGRAGREKQGRVVI 591


>gi|67923431|ref|ZP_00516909.1| Excinuclease ABC, C subunit [Crocosphaera watsonii WH 8501]
 gi|67854717|gb|EAM49998.1| Excinuclease ABC, C subunit [Crocosphaera watsonii WH 8501]
          Length = 611

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 24/32 (75%)

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           L+ L  QM LAA  LNFE+AA++RD+IK ++ 
Sbjct: 203 LQKLSAQMELAASQLNFEKAAQVRDQIKAIQG 234


>gi|328790575|ref|XP_001122539.2| PREDICTED: ATP-dependent RNA helicase DDX51-like [Apis mellifera]
          Length = 600

 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T R+   L  +L E+NI V  + +++ + ER +I+     GK  +L+  + L  G+DIP+
Sbjct: 435 THRLTILLQSFLSEKNIIVGELSAQLVSKEREKILNKFINGKIQILICSDALARGVDIPD 494

Query: 651 CGLVAILDADKE--GFLRSKTSLIQTIGRAAR 680
             LV   D  K   G+       I   GR  R
Sbjct: 495 VQLVVSYDLPKHINGY-------IHRAGRTGR 519


>gi|313679216|ref|YP_004056955.1| ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977]
 gi|313151931|gb|ADR35782.1| ATP-dependent RNA helicase DbpA [Oceanithermus profundus DSM 14977]
          Length = 528

 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 35/71 (49%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK+ A+++   L  R      +H ++   +R   +   R G+  VLV  ++  
Sbjct: 248 RAIVFTRTKKEADEVARALTARGHAAEAVHGDLNQTQRERSVGRFRSGQVGVLVATDVAA 307

Query: 644 EGLDIPECGLV 654
            GLDIPE  LV
Sbjct: 308 RGLDIPEVDLV 318


>gi|312886226|ref|ZP_07745840.1| primosomal protein N' [Mucilaginibacter paludis DSM 18603]
 gi|311301251|gb|EFQ78306.1| primosomal protein N' [Mucilaginibacter paludis DSM 18603]
          Length = 827

 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           I+ D+   K D+LVG  ++ +GLD P+  ++ I+ AD            RS   L Q  G
Sbjct: 621 ILNDIEEKKIDILVGTQMVAKGLDFPDITVIGIISADSLLKYPDYRANERSFQLLAQVSG 680

Query: 677 RAAR 680
           RA R
Sbjct: 681 RAGR 684


>gi|294629781|ref|ZP_06708341.1| transcription-repair coupling factor [Streptomyces sp. e14]
 gi|292833114|gb|EFF91463.1| transcription-repair coupling factor [Streptomyces sp. e14]
          Length = 1184

 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 12/108 (11%)

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           + G+G +E      V L+ G S +  +++ +L    Y R ++   RG F V G  +++FP
Sbjct: 140 VKGLGDLEP-----VALRTGQSADLNQVVEALAAAAYARVELVEKRGEFAVRGGILDVFP 194

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
              E+   RV  +G+D+EEI  F      K+ +  ++++  +  +  P
Sbjct: 195 P-TEEHPLRVEFWGDDVEEIRYF------KVADQRSLEVAEHGLWAPP 235


>gi|227522395|ref|ZP_03952444.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii
           ATCC 8290]
 gi|227090453|gb|EEI25765.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii
           ATCC 8290]
          Length = 502

 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++++ L  R      +H ++    R +I+ + + GK D+LV  ++   G+DI  
Sbjct: 248 TKRRVDEVSKGLEARGYNAAGLHGDLTQARRTQIMNEFKQGKVDILVATDVAARGIDISG 307

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
              V   D   D +G+       +  +GR  R
Sbjct: 308 VTHVYNYDIPQDPDGY-------VHRVGRTGR 332


>gi|194856991|ref|XP_001968873.1| GG25110 [Drosophila erecta]
 gi|190660740|gb|EDV57932.1| GG25110 [Drosophila erecta]
          Length = 389

 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++        ++   T+R  + LT+ +   N  V  MH +++  +R  I++  R
Sbjct: 248 DLYDTLSITQS-----VIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFR 302

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFL 665
            G   VL+  +LL  G+D+ +  LV   D  +++E ++
Sbjct: 303 SGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYI 340


>gi|311747453|ref|ZP_07721238.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
 gi|126574812|gb|EAZ79183.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
          Length = 580

 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKRM ++ TE L  R I    +H ++   +R +++   R G   VLV  ++   G+D+  
Sbjct: 253 TKRMTDEATEALGSRGILAEALHGDLSQAQRDKVMNKFRKGLCTVLVATDVAARGIDVDN 312

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
              V   D   D E       S +  IGR  R
Sbjct: 313 VEAVFNFDLPLDDE-------SYVHRIGRTGR 337


>gi|89897946|ref|YP_515056.1| transcription-repair coupling factor [Chlamydophila felis Fe/C-56]
 gi|89331318|dbj|BAE80911.1| transcription-repair coupling factor-superfamily II helicase
           [Chlamydophila felis Fe/C-56]
          Length = 1084

 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 19/132 (14%)

Query: 89  KQTREISEQTMTPSVQALARL--IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTD 146
           K++R++SE+++    + L +L   +S  P      I+ PH         +++  F  +  
Sbjct: 508 KRSRDLSEKSLVLYAEKLLQLEAQRSTAPSF----IYPPH--------GEEVMKFAERFP 555

Query: 147 YHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAP 201
           Y  + DQ  AI Q+   + S + + +L+ G  G GKT   M   ++A+    R  IVM P
Sbjct: 556 YEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAVCDGHRQVIVMVP 615

Query: 202 NKILAAQLYSEF 213
             ILA Q Y  F
Sbjct: 616 TTILANQHYETF 627


>gi|290508239|ref|ZP_06547610.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. 1_1_55]
 gi|289777633|gb|EFD85630.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. 1_1_55]
          Length = 443

 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 575 INLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           I+L  Q +  R ++ V  +    +L   L+E  I   ++  E+  ++R E I+ L  G+ 
Sbjct: 240 IHLLKQPEATRSIVFVRKRERVHELAAKLHEAGINTCWLEGEMVQIKRNEAIKRLTDGRV 299

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +VL+  ++   G+DIP+   V   D       R+    +  IGR  R
Sbjct: 300 NVLIATDVAARGIDIPDVSHVFNFD-----MPRTADIYLHRIGRTGR 341


>gi|283457687|ref|YP_003362273.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133688|dbj|BAI64453.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 574

 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 33/65 (50%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TKR A  + E L  R      +H ++  + R + ++  R GK D+LV  ++  
Sbjct: 267 RTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTGKVDILVATDVAA 326

Query: 644 EGLDI 648
            G+D+
Sbjct: 327 RGIDV 331


>gi|253751272|ref|YP_003024413.1| primosomal protein N' [Streptococcus suis SC84]
 gi|253753173|ref|YP_003026313.1| primosomal protein N' [Streptococcus suis P1/7]
 gi|253754996|ref|YP_003028136.1| primosomal protein N' [Streptococcus suis BM407]
 gi|251815561|emb|CAZ51144.1| putative primosomal protein N' [Streptococcus suis SC84]
 gi|251817460|emb|CAZ55201.1| putative primosomal protein N' [Streptococcus suis BM407]
 gi|251819418|emb|CAR44889.1| putative primosomal protein N' [Streptococcus suis P1/7]
 gi|319757552|gb|ADV69494.1| primosome assembly protein PriA [Streptococcus suis JS14]
          Length = 796

 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  ++L E L E  I    + +  K     +++     G+ D+L+G  ++ +GLD P 
Sbjct: 557 TQKAYDELQELLPEARILRMDVDTTKKKGAHEDLLERFGRGEADILLGTQMIAKGLDFPN 616

Query: 651 CGLVAILDADKEGFL-------RSKTSLIQTIGRAAR 680
             LV +L+AD    L       R+   L Q  GRA R
Sbjct: 617 VTLVGVLNADTALNLPDFRSSERTFQLLTQVAGRAGR 653



 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPN 202
           D +P  +Q  A+ +++  I    +  LL GVTGSGKT    +VI+    M + AI++ P 
Sbjct: 259 DLNP--EQAIAVREIVASIGQESQTFLLQGVTGSGKTEVYLQVIDRVLKMGKTAIMLVPE 316

Query: 203 KILAAQLYSEFKNFF 217
             L  Q+ + F + F
Sbjct: 317 ISLTPQMTNRFISRF 331


>gi|19387227|gb|AAL87144.1|AF479825_1 DEAD box RNA helicase Vasa [Oncorhynchus mykiss]
          Length = 396

 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+ +  +L    +    +H + +  ER + + D R G+  VLV  ++  
Sbjct: 214 RTMVFVETKRQADFIATFLCREKVNTTSIHGDREQREREQALGDFRSGRCPVLVATSVAA 273

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
            GLDI +   +   D        +    +  IGR  R  N+ + + + D
Sbjct: 274 RGLDIKDVQHIVNFD-----LPNNIDEYVHRIGRTGRCGNTGRAVCFFD 317


>gi|74354729|gb|AAI03319.1| DDX5 protein [Bos taurus]
          Length = 671

 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 400 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 459

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 460 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 495


>gi|28211544|ref|NP_782488.1| DNA repair helicase rad25 [Clostridium tetani E88]
 gi|28203985|gb|AAO36425.1| DNA repair helicase rad25 [Clostridium tetani E88]
          Length = 993

 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 15/125 (12%)

Query: 564 ARTQVEDVYDEINLAAQQGLRI--LLTVLTKRMAEDLTEYLYERNIRVRYMHSEV----- 616
           A  +V+ + D+IN     G R+  L+    K+ A++L++    +  +   +  E      
Sbjct: 453 AEERVKHIIDKINFYGYCGERVRGLIFCSDKKEAKELSDIFNTKGYKTIALTGENSQQER 512

Query: 617 -KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            K +ER+E  +D  L   D +  +++  EG+DIP    V +L   K   +      +Q +
Sbjct: 513 EKAIERLE--QDEILNSLDYIFTVDIFNEGVDIPSVNQVVMLRPTKSSII-----FVQQL 565

Query: 676 GRAAR 680
           GR  R
Sbjct: 566 GRGLR 570


>gi|315634134|ref|ZP_07889423.1| excision endonuclease subunit UvrC [Aggregatibacter segnis ATCC
           33393]
 gi|315477384|gb|EFU68127.1| excision endonuclease subunit UvrC [Aggregatibacter segnis ATCC
           33393]
          Length = 610

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 4/50 (8%)

Query: 750 AQQLSLSK----KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AQQ++ ++     K +  L  L KQM  A+  LNFEEAAR+RD+I+ +++
Sbjct: 188 AQQVNFARLFLQGKDQQVLDHLVKQMEQASQQLNFEEAARVRDQIQAVRA 237


>gi|315187200|gb|EFU20957.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
           6578]
          Length = 1127

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 61/305 (20%), Positives = 112/305 (36%), Gaps = 50/305 (16%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF------FPHNAVEYFVSY 228
           GV G   +F +A+ +  + RP  V+ P +  A       +        FP   +  +   
Sbjct: 37  GVQGGFSSFFLAR-LSGLGRPLCVVFPTEKEAEDAVESLRALGVEAGCFPEWGITLYGEG 95

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
              + P                      R      R L    + +  S  + ++ +   +
Sbjct: 96  LAEHAP-------------------VFGRRAEVLARLLAGELEVVCTSLRAFLWRLPPAD 136

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            + + ++ L+ G  V+   L   LV+  Y R     +RG   V G+ +++F    E+ A+
Sbjct: 137 RFRERLLVLRKGQQVDPAALAGRLVEMGYFRVPRVSLRGECAVRGEVVDVFAPG-EEGAF 195

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+ +  + IE I  F P + + ++  + I +     Y+     L+     ++E LK R  
Sbjct: 196 RLVVDFDRIEHIRLFDPSSQRTLKEKDLIVVPPLREYLWDEEGLSR----VREALKARAP 251

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
            L+ +G + E              L   G  Q  E Y          E P +L EY+P  
Sbjct: 252 RLDVDGLVGE--------------LAVRGRMQGEELYWPLAY-----ESPSSLLEYVPGT 292

Query: 469 SLLFV 473
            LL +
Sbjct: 293 PLLLL 297


>gi|307209142|gb|EFN86284.1| Probable ATP-dependent RNA helicase Dbp73D [Harpegnathos saltator]
          Length = 660

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 6/103 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R+A  +   L ERN+ V  + +++   +R  ++     G+  VL+  + L  GLDIPE  
Sbjct: 490 RLALLIRSLLSERNVTVGELSAQLMPKQRESVLSKFASGETHVLISSDALARGLDIPEVQ 549

Query: 653 LVAILDADK--EGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           LV   D  K  +G++          GRA +   +  +L A  I
Sbjct: 550 LVVSYDVPKHIKGYIHRAGR----TGRAGKPGTAVSVLTASQI 588


>gi|306783973|ref|ZP_07422295.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu003]
 gi|308331209|gb|EFP20060.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu003]
          Length = 563

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 4/143 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  E++ E L  R      +  +V   +R   I  LR G  D+LV  ++   
Sbjct: 253 MIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAAR 312

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+    +  +L+ D      S    I   GRA R  +   +++       +  AI++ 
Sbjct: 313 GLDVER--ISHVLNYDIPHDTESYVHRIGRTGRAGR--SGAALIFVSPRELHLLKAIEKA 368

Query: 705 TRRREKQLEHNKKHNINPQSVKE 727
           TR+   + +     ++N Q V +
Sbjct: 369 TRQTLTEAQLPTVEDVNTQRVAK 391


>gi|282852357|ref|ZP_06261699.1| DEAD/DEAH box helicase [Lactobacillus gasseri 224-1]
 gi|282556099|gb|EFB61719.1| DEAD/DEAH box helicase [Lactobacillus gasseri 224-1]
          Length = 746

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 7/124 (5%)

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRM--AEDLTEYLYERNIRVRYMHSEVKTLER 621
           AR +VE V  +++     G +    V   R   A +L +   +     R + +E    +R
Sbjct: 417 ARKRVEYVLKQLDYYGYCGEKAKGLVFCSRQEEARELAKLFSQTGHPSRALTNEDSQKQR 476

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           IE+   L  G+ + +  ++L  EG+DIP    + +L        +S    IQ +GR  R 
Sbjct: 477 IEVTHQLENGELEYIFTVDLFNEGIDIPSLNQIVMLRNT-----QSSIVFIQQLGRGLRK 531

Query: 682 VNSK 685
              K
Sbjct: 532 FPGK 535


>gi|227485004|ref|ZP_03915320.1| transcription-repair coupling factor [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237001|gb|EEI87016.1| transcription-repair coupling factor [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 1162

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 47/242 (19%), Positives = 106/242 (43%), Gaps = 21/242 (8%)

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIVQL 297
           P  DT      SI+++    R     SL +    I V++ + I   + +++ +++  V +
Sbjct: 80  PDLDTNFYNIKSIDDKKINQRLECLISLSKGEKFITVTNFAAIKNKLTTLDRFNKSFVII 139

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
                ++  + ++SL    Y   D    RG F   G  I+I+P + ED   R+ +F +++
Sbjct: 140 DEESIIDVDDFINSLSALNYNSTDFVEERGDFAKRGSIIDIWPINYED-PVRIELFDDEV 198

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           + I  F   T + I+ ++ ++I   +  +         +K I  ++  + +   K+ +L+
Sbjct: 199 DSIRIFDKNTQRTIKKIKNVEIGPANELLYDSDDYKKVIKAISNDIDKKEVTNTKDQKLV 258

Query: 418 EAQRLEQRITY-DLEMLETTG---SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
           +  + +Q I++ D +M        +    ENYS ++             +Y+P  ++   
Sbjct: 259 D--KYKQIISFLDQKMYVANKDLINAYRTENYSSFI-------------DYLPAGTIFIF 303

Query: 474 DE 475
           D+
Sbjct: 304 DD 305


>gi|227514325|ref|ZP_03944374.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum
           ATCC 14931]
 gi|227087297|gb|EEI22609.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum
           ATCC 14931]
          Length = 495

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++    R +I+R  + G  D+LV  ++   GLDI  
Sbjct: 251 TKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILVATDVAARGLDI-- 308

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+  + + D         S +  IGR  R  +  V L
Sbjct: 309 SGVTHVYNYD---IPSDPDSYVHRIGRTGRAGHHGVSL 343


>gi|227509297|ref|ZP_03939346.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227512309|ref|ZP_03942358.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
 gi|227084484|gb|EEI19796.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
 gi|227191227|gb|EEI71294.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 502

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +++++ L  R      +H ++    R +I+ + + GK D+LV  ++   G+DI  
Sbjct: 248 TKRRVDEVSKGLEARGYNAAGLHGDLTQARRTQIMNEFKQGKVDILVATDVAARGIDISG 307

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
              V   D   D +G+       +  +GR  R
Sbjct: 308 VTHVYNYDIPQDPDGY-------VHRVGRTGR 332


>gi|224067501|ref|XP_002193843.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
           [Taeniopygia guttata]
          Length = 617

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 11/138 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVL   ++  +
Sbjct: 430 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKDVLGATDVASK 489

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +       T  I  A DE+
Sbjct: 490 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGI------ATTFINKACDES 538

Query: 705 TRRREKQLEHNKKHNINP 722
                K L    K  + P
Sbjct: 539 VLMDLKALLLEAKQKVPP 556


>gi|196003188|ref|XP_002111461.1| hypothetical protein TRIADDRAFT_55507 [Trichoplax adhaerens]
 gi|190585360|gb|EDV25428.1| hypothetical protein TRIADDRAFT_55507 [Trichoplax adhaerens]
          Length = 420

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            +++T  L +    V  +HSE     R  ++  L+ G  DVLV  +L   GLDIPE   V
Sbjct: 284 VDEVTLALKKEQFHVASLHSEKTQAYRFRVMTALKSGGVDVLVATDLASRGLDIPEVSHV 343

Query: 655 AILDADKEGFLRSKTSLIQTIGRAAR 680
              D  +     +    I   GR AR
Sbjct: 344 ISYDMPE-----TIEDYIHRCGRTAR 364


>gi|189208045|ref|XP_001940356.1| ATP-dependent RNA helicase DBP5 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187976449|gb|EDU43075.1| ATP-dependent RNA helicase DBP5 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 486

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 16/104 (15%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+R AE+L + +     +V  +   ++  ER  II   R G+  VL+  N+L  G
Sbjct: 320 IIFVRTRRTAEELEKRMVAEGHKVAQLSGALEGPERDRIIDQFRSGEAKVLITTNVLARG 379

Query: 646 LDIPECGLVA---------ILDADKEGFLRSKTSLIQTIGRAAR 680
           +D+    +V           +DAD E +L         IGR  R
Sbjct: 380 IDVESVTMVINYDVPTMANGIDADPETYLHR-------IGRTGR 416


>gi|189485610|ref|YP_001956551.1| ATP-dependent DNA helicase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287569|dbj|BAG14090.1| ATP-dependent DNA helicase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 700

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 4/77 (5%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           R+ +V  +H  +K+ ++ +I+ + +  +FDVL+   ++  G+D+P+  ++ I  A++ G 
Sbjct: 516 RDFKVGLLHGRMKSSKKNKIMLEFKNKEFDVLISTTVIGVGIDVPDVTVMIIQHAERFGL 575

Query: 665 LRSKTSLIQTIGRAARN 681
               + L Q  GR  R 
Sbjct: 576 ----SDLHQLRGRIGRG 588


>gi|156977695|ref|YP_001448601.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116]
 gi|156529289|gb|ABU74374.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116]
          Length = 527

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVYD-EINLAAQQGLR---------ILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y  ++   A   ++         +L+   TK  A 
Sbjct: 198 GLVNNPVEISVNPANSTARTVEQCIYPADVKKKAPMLVKLIKDGDWKQVLVFTKTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L ++L ++ I    +H       R + + D + G+  VLV  ++   G+DIP+
Sbjct: 258 RLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGIDIPQ 311


>gi|149194567|ref|ZP_01871663.1| excinuclease ABC subunit C [Caminibacter mediatlanticus TB-2]
 gi|149135311|gb|EDM23791.1| excinuclease ABC subunit C [Caminibacter mediatlanticus TB-2]
          Length = 606

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           L  L K+M   A+NL FEEAA IRD IK ++S+  +  +D
Sbjct: 203 LDILNKKMQKFAENLQFEEAAEIRDRIKAIESAEIYSNVD 242


>gi|159896633|ref|YP_001542880.1| type III restriction protein res subunit [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159889672|gb|ABX02752.1| type III restriction protein res subunit [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 440

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 9/97 (9%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  I+   R G++  LV   +L EG+D+P+  +  ++         +    IQ +GR  
Sbjct: 348 ERKSILDGFRSGRYSKLVTGRVLNEGVDVPDANVAIVVSGSA-----TAREYIQRLGRVL 402

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQL-EHN 715
           R    + +LY + +T++      +T RRR+K +  HN
Sbjct: 403 RKKPDEALLY-ELVTRNTSEV--QTARRRKKAVAAHN 436


>gi|328779178|ref|XP_623193.3| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Apis
           mellifera]
          Length = 588

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 12/140 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  +D+T  +     +   +H +    ER  ++++ + G+  +LV  ++  
Sbjct: 362 KTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQERDHVLQEFKSGRAPILVATDVAA 421

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLD+ +   V   D     +  S    I  IGR  R   +    YA   + +++ A D 
Sbjct: 422 RGLDVDDVKYVINFD-----YPSSSEDYIHRIGRTGRRRQTGT-AYAFFTSHNMKHAGDL 475

Query: 704 TTRRREKQLEHNKKHNINPQ 723
               RE         NINP+
Sbjct: 476 IEVLRE------AGQNINPR 489


>gi|322375221|ref|ZP_08049735.1| transcription-repair coupling factor [Streptococcus sp. C300]
 gi|321280721|gb|EFX57760.1| transcription-repair coupling factor [Streptococcus sp. C300]
          Length = 1167

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + ++H ++  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGFVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924



 Score = 37.7 bits (86), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 91/197 (46%), Gaps = 15/197 (7%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E  +   +++      A ++ S+  +      V     
Sbjct: 24  KKRQLILGLSTSTKALAIASSLEK-ENKIVLLTSTYGEAERIISDLLSLLGEELV----- 77

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
            Y +   ++  P  +  +  +  I  +++ +R  +  S   +   +V +  +    + S 
Sbjct: 78  -YPFLVDDS--PMVEFLMSSQEKIISRVEALRFLSDPS---KRGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDV 346
             + +  +++ +G+  +Q ELL  L +  Y++      +G F + GD ++IF  S LE  
Sbjct: 132 TRFKESTIKIAVGEEYDQHELLHRLKEIGYRKVTQVQTQGEFSIRGDILDIFEMSQLE-- 189

Query: 347 AWRVSMFGNDIEEISEF 363
            +R+  FG++++ I  F
Sbjct: 190 PFRIEFFGDEVDGIRTF 206


>gi|296445812|ref|ZP_06887764.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
 gi|296256640|gb|EFH03715.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
          Length = 700

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 150 SGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT----FTMAKVIEAMQRPAIVMAPNKI 204
           +G Q  A+A++   + S R  ++LL G  GSGKT      MA V+E   R A +MAP +I
Sbjct: 274 TGAQTRALAEIRADLSSSRRMLRLLQGDVGSGKTIVALLAMASVVEC-GRQAALMAPTEI 332

Query: 205 LAAQLYSEF 213
           LA Q Y + 
Sbjct: 333 LARQHYEKL 341


>gi|281201329|gb|EFA75541.1| hypothetical protein PPL_11046 [Polysphondylium pallidum PN500]
          Length = 1128

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 8/54 (14%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK--------EGFLRSKTS 670
           +   R G+++V+V   +L EGLD+P+C +V  +D+           G LRSK S
Sbjct: 571 VEKFRSGQYNVIVATAVLEEGLDVPKCNVVIRIDSPATVTAFTQCRGHLRSKKS 624


>gi|262274927|ref|ZP_06052738.1| ATP-dependent RNA helicase SrmB [Grimontia hollisae CIP 101886]
 gi|262221490|gb|EEY72804.1| ATP-dependent RNA helicase SrmB [Grimontia hollisae CIP 101886]
          Length = 413

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++  +Q  R ++ V T+     L EYL    I+  ++  E+   +R   I     G+ +V
Sbjct: 239 SILTEQAKRAIIFVKTRERLAALREYLTAEKIKCAWLQGEMPQAKRTYAIERFTRGEINV 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           L+  ++   G+D+P+   V   D       R     +  IGR AR
Sbjct: 299 LLATDVAARGIDVPDIDHVINFD-----LPRKADVYLHRIGRTAR 338


>gi|168180622|ref|ZP_02615286.1| ATP-dependent DNA helicase RecG [Clostridium botulinum NCTC 2916]
 gi|182668552|gb|EDT80531.1| ATP-dependent DNA helicase RecG [Clostridium botulinum NCTC 2916]
          Length = 679

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y + + +  +H ++K  E+  I++D + GK   L+   ++  G+++P   L+ I +A++ 
Sbjct: 497 YFKEVEIAILHGKMKGKEKDTIMKDFKEGKIKALISTTVIEVGVNVPNATLMVIENAERF 556

Query: 663 GFLRSKTSLIQTIGRAAR 680
           G       L Q  GR  R
Sbjct: 557 GL----AQLHQLRGRVGR 570


>gi|156088623|ref|XP_001611718.1| DEAD/DEAH box helicase family protein [Babesia bovis]
 gi|154798972|gb|EDO08150.1| DEAD/DEAH box helicase family protein [Babesia bovis]
          Length = 480

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           EYL   + +V  +HS +K  +R   +   R G   +LV  +L+  G+DI     V  LD 
Sbjct: 341 EYL---DFKVTCIHSLMKQRKRNACLAKFRTGVSKILVATDLIARGIDIQAVSFVVNLD- 396

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
               F R+    I  +GR AR+ ++ + +
Sbjct: 397 ----FPRTTEDYIHRVGRTARSKSTGIAI 421


>gi|125526364|gb|EAY74478.1| hypothetical protein OsI_02369 [Oryza sativa Indica Group]
          Length = 792

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G ++L+   TKRM + L   L  R      +H +    ER +++   R G+  +LV  ++
Sbjct: 395 GSKVLIFCTTKRMCDQLARTL-TRQFGASAIHGDKSQSEREKVLSHFRSGRSPILVATDV 453

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              GLDI +  +V         F       +  IGR  R
Sbjct: 454 AARGLDIKDIRVVI-----NSPFPTGIEDYVHRIGRTGR 487


>gi|15892836|ref|NP_360550.1| transcription-repair coupling factor [Rickettsia conorii str.
           Malish 7]
 gi|81854092|sp|Q92H58|MFD_RICCN RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|15620021|gb|AAL03451.1| transcription-repair coupling factor [Rickettsia conorii str.
           Malish 7]
          Length = 1122

 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           E++ +   GKFD+LV   ++  G+DI E   + I +AD  G     + L Q  GR  R
Sbjct: 834 EVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGL----SQLYQLRGRIGR 887



 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 23/187 (12%)

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYV 238
           F +    + +++  I+ A N+  A QLY +   F  +  + YF SY    YD+  P A +
Sbjct: 14  FAIDNFTKNLKQDFILSASNEEEALQLYKQALFFSSNENIYYFPSYNTIPYDHTSPNANI 73

Query: 239 P--RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
              R +T I K ++ N   +++  + T +LL +              +   + +S+  ++
Sbjct: 74  LSRRAETLI-KLTTNNSNSNKLLITHTANLLNK--------------LPPKDFFSKYFLK 118

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L         EL   LV+  + R    I  G F V G+ I+I  S  +  A+R+      
Sbjct: 119 LSPKMKFTTDELAMFLVENSFTRNASSIDVGEFAVRGEIIDIILSGPK--AYRIHFSWGY 176

Query: 357 IEEISEF 363
           IE I EF
Sbjct: 177 IESIKEF 183


>gi|296282423|ref|ZP_06860421.1| primosome assembly protein PriA [Citromicrobium bathyomarinum
           JL354]
          Length = 725

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            +R+A+++ E   E  I V    +        E +     G  DV+VG  L+ +G   P+
Sbjct: 490 VERVADEVREIAPEARIAVATSDTLNTPARAAEFVAMAESGAIDVIVGTQLVTKGFHFPD 549

Query: 651 CGLVAILDAD---KEGFLRSKTSLIQTI----GRAARNVNSKVIL 688
             LV ++DAD   + G LR+   + Q I    GRA R      +L
Sbjct: 550 LTLVGVVDADLGLEGGDLRAAERVYQQIAQVAGRAGRASKPGEVL 594


>gi|227504114|ref|ZP_03934163.1| transcription-repair coupling factor [Corynebacterium striatum ATCC
           6940]
 gi|227199290|gb|EEI79338.1| transcription-repair coupling factor [Corynebacterium striatum ATCC
           6940]
          Length = 1220

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 10/89 (11%)

Query: 284 IGSVESYSQMIVQLKIGDS---------VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           + +   YSQ I++   G S         +E + ++S L  + YK  D+   RG + V G 
Sbjct: 118 VTAARGYSQPILKNVEGRSPISLAEDMEIELEAIVSQLEFRAYKHVDMVAKRGEYAVRGG 177

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            +++FP+ L D   RV  +G++I +I +F
Sbjct: 178 ILDVFPTTL-DYPVRVEFWGDEITDIRQF 205


>gi|170756283|ref|YP_001782038.1| ATP-dependent DNA helicase RecG [Clostridium botulinum B1 str.
           Okra]
 gi|169121495|gb|ACA45331.1| ATP-dependent DNA helicase RecG [Clostridium botulinum B1 str.
           Okra]
          Length = 679

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y + + +  +H ++K  E+  I++D + GK   L+   ++  G+++P   L+ I +A++ 
Sbjct: 497 YFKEVEIAILHGKMKGKEKDTIMKDFKEGKIKALISTTVIEVGVNVPNATLMVIENAERF 556

Query: 663 GFLRSKTSLIQTIGRAAR 680
           G       L Q  GR  R
Sbjct: 557 GL----AQLHQLRGRVGR 570


>gi|170056673|ref|XP_001864136.1| DEAD-box ATP-dependent RNA helicase 57 [Culex quinquefasciatus]
 gi|167876423|gb|EDS39806.1| DEAD-box ATP-dependent RNA helicase 57 [Culex quinquefasciatus]
          Length = 572

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 578 AAQQGLR--ILLTVLTKRMAEDL-TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           A  +GL   +L+ V +K  A+ L TE LY+  + V  +H++    ER  ++R  R GK  
Sbjct: 381 AVHKGLTPPVLVFVQSKDRAQQLFTELLYD-GLNVDVIHADRSQRERDNVVRSFREGKIW 439

Query: 635 VLVGINLLREGLDIPECGLVAILD 658
           +L+   L+  G+D     LV   D
Sbjct: 440 ILICTELMSRGIDFKGVNLVVNYD 463


>gi|225434327|ref|XP_002266157.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297745752|emb|CBI15808.3| unnamed protein product [Vitis vinifera]
          Length = 568

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           K   +++ E L  + +R   +H      ER   +RD R G  ++LV  ++   GLD+   
Sbjct: 386 KTRCDEVAEALVAQGLRAVALHGGRSQAEREAALRDFRNGATNILVATDVASRGLDV--T 443

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G+  +++ D     ++  + +  IGR  R
Sbjct: 444 GVAHVINLD---LPKAMENYVHRIGRTGR 469


>gi|86742288|ref|YP_482688.1| DEAD/DEAH box helicase-like protein [Frankia sp. CcI3]
 gi|86569150|gb|ABD12959.1| ATP-dependent DNA helicase RecG [Frankia sp. CcI3]
          Length = 739

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++RV  +H  +   +R   +     G+ DVLV   ++  G+++P   ++ +LDAD+ G  
Sbjct: 555 DLRVEPLHGRLAPGQREATMNRFAAGEVDVLVATTVIEVGVNVPNATVMVVLDADRFGV- 613

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R 
Sbjct: 614 ---SQLHQLRGRVGRG 626


>gi|197099326|ref|NP_001126958.1| probable ATP-dependent RNA helicase DDX5 [Pongo abelii]
 gi|75061603|sp|Q5R4I9|DDX5_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|55733290|emb|CAH93327.1| hypothetical protein [Pongo abelii]
          Length = 614

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 402

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 403 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 438


>gi|31792446|ref|NP_854939.1| cold-shock DEAD-box protein A [Mycobacterium bovis AF2122/97]
 gi|121637182|ref|YP_977405.1| putative cold-shock dead-box protein a homolog deaD [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|215430135|ref|ZP_03428054.1| hypothetical protein MtubE_05528 [Mycobacterium tuberculosis
           EAS054]
 gi|224989657|ref|YP_002644344.1| putative cold-shock dead-box protein a homolog [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|260186187|ref|ZP_05763661.1| hypothetical protein MtubCP_09173 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289446844|ref|ZP_06436588.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289753325|ref|ZP_06512703.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis EAS054]
 gi|31618035|emb|CAD94146.1| PROBABLE COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG DEAD (ATP-dependent
           RNA helicase deaD homolog) [Mycobacterium bovis
           AF2122/97]
 gi|121492829|emb|CAL71300.1| Probable cold-shock dead-box protein a homolog deaD [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|224772770|dbj|BAH25576.1| putative cold-shock dead-box protein a homolog [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|289419802|gb|EFD17003.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289693912|gb|EFD61341.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis EAS054]
          Length = 563

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 4/143 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  E++ E L  R      +  +V   +R   I  LR G  D+LV  ++   
Sbjct: 253 MIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAAR 312

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+    +  +L+ D      S    I   GRA R  +   +++       +  AI++ 
Sbjct: 313 GLDVER--ISHVLNYDIPHDTESYVHRIGRTGRAGR--SGAALIFVSPRELHLLKAIEKA 368

Query: 705 TRRREKQLEHNKKHNINPQSVKE 727
           TR+   + +     ++N Q V +
Sbjct: 369 TRQTLTEAQLPTVEDVNTQRVAK 391


>gi|322390991|ref|ZP_08064496.1| competence protein FA [Streptococcus parasanguinis ATCC 903]
 gi|321142295|gb|EFX37768.1| competence protein FA [Streptococcus parasanguinis ATCC 903]
          Length = 432

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 62/117 (52%), Gaps = 10/117 (8%)

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           L ++  E+L +Y  +    V ++ S+  T +R+ ++ + R     +LV   +L  G+  P
Sbjct: 313 LGQQFTENLKKYFPKET--VGFVSSQ--TTDRLRMVEEFRNRAITMLVSTTILERGVTFP 368

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNV---NSKVILYADTITKSIQLAIDE 703
               V +L+++ + F  +K++L+Q  GR  R+      K++  +D IT+ ++ AI E
Sbjct: 369 FVD-VFVLESNHKLF--TKSALVQISGRVGRSKERPTGKLLFLSDGITREMKKAIKE 422


>gi|320164192|gb|EFW41091.1| nucleolar RNA helicase 2 [Capsaspora owczarzaki ATCC 30864]
          Length = 793

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 44/221 (19%)

Query: 132 NNHSKDI-TFFQMQTD-YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA-KV 188
           N H++ I T F +Q   YHP  +    +AQ                 TGSGKT + A  V
Sbjct: 209 NLHAQGIRTLFPIQAQTYHPIFEGKDIVAQ---------------ARTGSGKTLSFALPV 253

Query: 189 IEAMQR---------PAI-VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE-AY 237
           IE + +         PA+ VMAP + LA+Q++  F++  P  A        +Y   E A 
Sbjct: 254 IERLLKNPRSEKGRAPAVLVMAPTRELASQVHRVFESVAPQLASICVYGGVEYGPQELAM 313

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
               D  +     + +  +R   S     L   D +++     +  +G  E+  +++  L
Sbjct: 314 RKGLDVVVGTPGRLIDHYNRGNLS-----LRSIDVMILDEADRMLEVGFQENVDEIMAGL 368

Query: 298 KIGDSVEQKELLSS-------LVKQQYKRQD---IGIIRGT 328
            IGD+  +  L S+        + ++Y+R+D   + ++ GT
Sbjct: 369 PIGDAKPRILLFSATMPTWVKALTKKYQREDKVMVDLVSGT 409


>gi|320540384|ref|ZP_08040034.1| putative transcription-repair coupling factor [Serratia symbiotica
           str. Tucson]
 gi|320029315|gb|EFW11344.1| putative transcription-repair coupling factor [Serratia symbiotica
           str. Tucson]
          Length = 1158

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 55/297 (18%), Positives = 119/297 (40%), Gaps = 42/297 (14%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           GS      A+++E    P +++AP+   A +L  E + F         +S ++    + +
Sbjct: 32  GSACAVECAEIVERHNGPVMLIAPDMQNALRLRDEIQQFTDQRVTT--LSDWETLPYDGF 89

Query: 238 VPRTDTYIEKESSINEQIDRMRHSA---TRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
            P  D    + SS+   +  M H       +L++R     V     ++G   V       
Sbjct: 90  SPHQDIISARLSSLY-HLPTMAHGVILPVNTLMQR-----VCPHEFLHGYALV------- 136

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             LK G  + + +L S L +  Y+     +  G F   G   +++P   E+  +R+  F 
Sbjct: 137 --LKKGQRLSRDKLRSQLEQAGYRSVAQVMAHGEFATRGALFDLYPMGSEE-PYRIDFFD 193

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ +  F   + + +  V+ I +     + T +  +       +E+  +R        
Sbjct: 194 DEIDSLRTFEVDSQRTLSEVDAINLLPAHEFPTDKNAIELFRSQWREQFDVR-------- 245

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
              + + + Q++        + G+  +   Y + L      +P P+LF Y+P ++L+
Sbjct: 246 --RDPEHIYQQV--------SKGNWPAGVEYWQPLFF---SQPLPSLFSYLPANTLI 289


>gi|308469221|ref|XP_003096849.1| hypothetical protein CRE_24668 [Caenorhabditis remanei]
 gi|308241264|gb|EFO85216.1| hypothetical protein CRE_24668 [Caenorhabditis remanei]
          Length = 1030

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 82/199 (41%), Gaps = 38/199 (19%)

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL------TEYLYERNIRV 609
           D P+E      ++ED+  E N    Q  R ++ V T+  A  L       E L  +NIR 
Sbjct: 665 DVPIE-NPMILKIEDLLTE-NHRENQNSRAIIFVQTRYDAITLKNILCDNENLLSQNIRT 722

Query: 610 RYMHSEVKTLE-----------RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
            Y+    KT E           ++E ++    G   VLV  ++  EGLDI EC LV    
Sbjct: 723 DYILGLNKTTEGSEDSAISRSDQVEKLKQFASGGIRVLVSTSVAEEGLDISECNLVI--- 779

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH 718
             K  +  +  + +Q  GR   N +S+ IL    IT    L         EKQ   NK  
Sbjct: 780 --KYNYATNVIAHVQRRGRGRAN-DSRSIL----ITNDPSL---------EKQERANKDK 823

Query: 719 NINPQSVKEKIMEVIDPIL 737
               ++  E+I E +D  L
Sbjct: 824 EKMSKAALERINENLDNFL 842


>gi|300855475|ref|YP_003780459.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300435590|gb|ADK15357.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 369

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +DL   LY+R    + +HS++   +R  I++  R      L+  ++   GLDI  
Sbjct: 248 TKRRVDDLEIALYQRGYNCKKLHSDIPQSKRERIMKSFRNADIQYLIATDVAARGLDIS- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  I + D      +  S I  IGR  R
Sbjct: 307 -GVTHIYNYD---IPENVESYIHRIGRTGR 332


>gi|294011405|ref|YP_003544865.1| transcription-repair coupling factor [Sphingobium japonicum UT26S]
 gi|292674735|dbj|BAI96253.1| transcription-repair coupling factor [Sphingobium japonicum UT26S]
          Length = 1154

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 1/92 (1%)

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q++ +L   + +    L   L    Y R D    RG F + G  +++FP   E+   R+ 
Sbjct: 125 QLVAKLAPKERIAISRLADMLQANGYVRTDTVHDRGEFAIRGGIVDLFPGG-EEQPLRLD 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
            FG++IE +  F P   +   +VE   +   S
Sbjct: 184 FFGDEIETVRRFDPADQRTSGSVEGFTLLPAS 215


>gi|261250797|ref|ZP_05943371.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891]
 gi|260937670|gb|EEX93658.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891]
          Length = 660

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+P   +  + + D    + S    I   GRA R    K IL   T    +   I+  T
Sbjct: 309 LDVPR--ITHVFNYDIPFDVESYIHRIGRTGRAGR--KGKAILLVRTNQLRMLRTIERVT 364

Query: 706 RR--REKQLEHNKK 717
           +    E QL H  K
Sbjct: 365 KSSMEEIQLPHRDK 378


>gi|255559772|ref|XP_002520905.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223539871|gb|EEF41450.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 407

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + +
Sbjct: 266 DLYDTLTIT-----QAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFQ 320

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R
Sbjct: 321 SGTTRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGR 366


>gi|2500527|sp|Q61656|DDX5_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box RNA helicase DEAD1; Short=mDEAD1; AltName:
           Full=DEAD box protein 5; AltName: Full=RNA helicase p68
 gi|51263|emb|CAA46581.1| p68 RNA helicase [Mus musculus]
          Length = 614

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 402

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 403 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 438


>gi|331265444|ref|YP_004325074.1| transcription-repair coupling factor [Streptococcus oralis Uo5]
 gi|326682116|emb|CBY99732.1| transcription-repair coupling factor [Streptococcus oralis Uo5]
          Length = 1167

 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + ++H ++  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGFVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924


>gi|322818320|gb|EFZ25769.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 631

 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 12/142 (8%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   Q   IL+ V  KR A+ L  +L    +    +H +    ER E ++  +     VL
Sbjct: 380 LHENQNQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMFKSASCQVL 439

Query: 637 VGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK------- 685
           V  ++   GLDIP+  +V   D  ++ + ++    +T     +GRA    N K       
Sbjct: 440 VATDVASRGLDIPDVSIVIQYDMPSNIDDYVHRIGRTGRAGKVGRAISFFNEKNRNIVDD 499

Query: 686 -VILYADTITKSIQLAIDETTR 706
            V L  +T    +Q  +D T R
Sbjct: 500 LVPLLNETHQNVLQQIMDLTKR 521


>gi|317484346|ref|ZP_07943267.1| ATP-dependent DNA helicase RecQ [Bilophila wadsworthia 3_1_6]
 gi|316924424|gb|EFV45589.1| ATP-dependent DNA helicase RecQ [Bilophila wadsworthia 3_1_6]
          Length = 617

 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 100/263 (38%), Gaps = 49/263 (18%)

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           S   VDE+H  I Q    +R D+   + L E   R P C    P+               
Sbjct: 149 SFFAVDEAHC-ISQWGHDFRPDYLALSGLVE---RFPQC----PV----------AAFTA 190

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN-----------L 577
           +ATP   E+E+        I+   GL +P + IR++  +    Y  +            L
Sbjct: 191 TATP---EVER-------DILSRLGLREPRL-IRASFDRPNLFYHVLPKEEPHAQLLSFL 239

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              +G   ++   T+R  E+   +L ++ ++    H+ +   ER+ +    R  +  V+V
Sbjct: 240 GGHEGESGIVYRSTRRKVEETAAFLQKKGVKAEAYHAGLPDAERMRVQEAFRRDECPVVV 299

Query: 638 GINLLREGLDIPECGLVAILDADK--EGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
                  G+D P+   VA LD  K  EG+        Q  GRA R+ +    L   +   
Sbjct: 300 ATVAFGMGIDKPDVRFVAHLDLPKNVEGY-------YQETGRAGRDGDPAHCLLLYSAAD 352

Query: 696 SIQLAIDETTRRREKQLEHNKKH 718
             QL         E+Q    +KH
Sbjct: 353 MAQLLYFARQTEDEEQRSIAEKH 375


>gi|310767325|gb|ADP12275.1| transcription-repair coupling factor [Erwinia sp. Ejp617]
          Length = 1148

 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 10/91 (10%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR++E + E       RV   H +++  E   ++ D    +F+VLV   ++  G+DIP 
Sbjct: 826 TKRLSELVPE------ARVALGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
              + I  AD+ G       L Q  GR  R+
Sbjct: 880 ANTIIIERADRFGL----AQLHQLRGRVGRS 906


>gi|290891221|ref|ZP_06554283.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429]
 gi|290479185|gb|EFD87847.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429]
          Length = 521

 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT+ L  R  +   +H ++    R+  +R  + G+   LV  ++   GLDI  
Sbjct: 248 TKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---VPQDPESYVHRIGRTGR 332


>gi|167969576|ref|ZP_02551853.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis H37Ra]
          Length = 563

 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 4/141 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  E++ E L  R      +  +V   +R   I  LR G  D+LV  ++   
Sbjct: 253 MIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAAR 312

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+     V  L+ D      S    I   GRA R  +   +++       +  AI++ 
Sbjct: 313 GLDVERISHV--LNYDIPHDTESYVHRIGRTGRAGR--SGAALIFVSPRELHLLKAIEKA 368

Query: 705 TRRREKQLEHNKKHNINPQSV 725
           TR+   + +     ++N Q V
Sbjct: 369 TRQTLTEAQLPTVEDVNTQRV 389


>gi|170033786|ref|XP_001844757.1| endoribonuclease Dcr-1 [Culex quinquefasciatus]
 gi|167874834|gb|EDS38217.1| endoribonuclease Dcr-1 [Culex quinquefasciatus]
          Length = 2270

 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 5/65 (7%)

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +EV+  ++ E+++  R+ + ++L+G ++L EG+D+P+C LV   +        S  S +Q
Sbjct: 538 AEVEHRKQEEVLKRFRMHECNLLIGTSVLEEGIDLPKCNLVIRWNEPV-----SYRSYVQ 592

Query: 674 TIGRA 678
             GRA
Sbjct: 593 CKGRA 597


>gi|37527225|ref|NP_930569.1| ATP-dependent RNA helicase SrmB [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786659|emb|CAE15723.1| ATP-dependent RNA helicase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 445

 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L + L++  I+ R++  E+   +R E ++ L  G   VLV  ++   GLDI +   V  
Sbjct: 263 ELADKLHQAGIKARFLEGEMVQAKRTEAVKLLNDGSVTVLVATDVAARGLDIDDISHVFN 322

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR 680
            D       R+    +  IGR AR
Sbjct: 323 FD-----LPRTADVYLHRIGRTAR 341


>gi|51473776|ref|YP_067533.1| transcription-repair coupling factor [Rickettsia typhi str.
           Wilmington]
 gi|81856448|sp|Q9AKD5|MFD_RICTY RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|13235382|emb|CAC33732.1| Mfd protein [Rickettsia typhi]
 gi|51460088|gb|AAU04051.1| transcription-repair coupling factor (superfamily helicase II)
           [Rickettsia typhi str. Wilmington]
          Length = 1120

 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E++ +   GKFD+L+   ++  G+DI E   + I +AD  G     + L Q  GR  R  
Sbjct: 832 EVMSEFYAGKFDILISTTIIESGIDITEANTMIIHNADTLGL----SQLYQLRGRIGR-- 885

Query: 683 NSKVILYADTITKSIQLAIDETTRRRE 709
             K+  YA     S +  +  + RR E
Sbjct: 886 -GKIRGYAYLTVASNKKLMQHSLRRLE 911


>gi|313906550|ref|ZP_07839880.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens
           6]
 gi|313468619|gb|EFR63991.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens
           6]
          Length = 524

 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK  A+ +   L    I  + +H +    +R   +   + G F VLV  ++  
Sbjct: 242 RTIIFTRTKHGADRVARNLTRSGIAAKAIHGDKTQGQRQSTLEGYKAGHFHVLVATDVAS 301

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            GLDIPE   V   +  +E       + I  IGR  R   S + +
Sbjct: 302 RGLDIPEVSHVINFNLPQE-----PEAYIHRIGRTGRAGESGIAI 341


>gi|269961856|ref|ZP_06176213.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
 gi|269833434|gb|EEZ87536.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
          Length = 526

 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVYD-EINLAAQQGLR---------ILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y  ++   A   ++         +L+   TK  A 
Sbjct: 198 GLVNNPVEISVNPANSTARTVEQCIYPADVKKKAPMLVKLIKDGDWKQVLVFTKTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L ++L ++ I    +H       R + + D + G+  VLV  ++   G+DIP+
Sbjct: 258 RLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGIDIPQ 311


>gi|153871188|ref|ZP_02000423.1| DNA repair protein RAD25 related protein [Beggiatoa sp. PS]
 gi|152072345|gb|EDN69576.1| DNA repair protein RAD25 related protein [Beggiatoa sp. PS]
          Length = 499

 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 17/163 (10%)

Query: 560 EIRSARTQVEDV-YDEINLAAQQGLRILLTVLTKR--------MAEDLTEYLYERNIRVR 610
           E+ + R +V ++ +  I   AQ  L IL  +L +          A +   Y   R   + 
Sbjct: 341 EVAARRAKVAELRWKNIVQQAQAKLDILDKLLREHSQQSMLIFTAHNRFAYRISRQHLIP 400

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +  + K  ER  I+     G +  +V   +L EG+D+PE  +  IL     G   +   
Sbjct: 401 VITHQTKAAERKAILEQFCQGTYRAIVTTRVLNEGIDVPEAKIAVIL-----GGSANDRE 455

Query: 671 LIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRREKQL 712
            +Q +GR  R   N++ ILY   +  +    I +  RR+ KQ+
Sbjct: 456 YVQRLGRVLRKQGNAEAILYEVIVRNTADELIAK--RRQPKQM 496


>gi|149635102|ref|XP_001510775.1| PREDICTED: similar to DDX5 protein [Ornithorhynchus anatinus]
          Length = 682

 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 411 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 470

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 471 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 506


>gi|24372986|ref|NP_717028.1| helicase, putative [Shewanella oneidensis MR-1]
 gi|24347138|gb|AAN54473.1|AE015584_4 helicase, putative [Shewanella oneidensis MR-1]
          Length = 987

 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L   ++K+ A+ + +Y   + I    ++S+ K + R + ++ L  G  +V+  ++L  
Sbjct: 448 RTLAFCVSKKHADFMAKYFTSKGINAIAVYSDSK-VRRNQALQWLAQGSIEVIFSVDLFN 506

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           EG D+P    + ++   +     SK   +Q +GR  R
Sbjct: 507 EGTDLPAIDTILMIRPTE-----SKILFLQQLGRGLR 538


>gi|15608393|ref|NP_215769.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis H37Rv]
 gi|15840699|ref|NP_335736.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|148661040|ref|YP_001282563.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis H37Ra]
 gi|148822470|ref|YP_001287224.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis F11]
 gi|215403092|ref|ZP_03415273.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis 02_1987]
 gi|215410888|ref|ZP_03419696.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215445431|ref|ZP_03432183.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis T85]
 gi|218752952|ref|ZP_03531748.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|253799702|ref|YP_003032703.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           1435]
 gi|254231510|ref|ZP_04924837.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis C]
 gi|254550260|ref|ZP_05140707.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289554958|ref|ZP_06444168.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           605]
 gi|289744998|ref|ZP_06504376.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           02_1987]
 gi|289757351|ref|ZP_06516729.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis T85]
 gi|289761405|ref|ZP_06520783.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|297633802|ref|ZP_06951582.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           4207]
 gi|297730788|ref|ZP_06959906.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           R506]
 gi|298524756|ref|ZP_07012165.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306775422|ref|ZP_07413759.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu001]
 gi|306781666|ref|ZP_07420003.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu002]
 gi|306788337|ref|ZP_07426659.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu004]
 gi|306792663|ref|ZP_07430965.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu005]
 gi|306797070|ref|ZP_07435372.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu006]
 gi|306802950|ref|ZP_07439618.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu008]
 gi|306807140|ref|ZP_07443808.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu007]
 gi|306967339|ref|ZP_07480000.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu009]
 gi|306971531|ref|ZP_07484192.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu010]
 gi|307079244|ref|ZP_07488414.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu011]
 gi|307083813|ref|ZP_07492926.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu012]
 gi|313658120|ref|ZP_07815000.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           V2475]
 gi|1706338|sp|Q11039|DEAD_MYCTU RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|1480333|emb|CAB00899.1| PROBABLE COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG DEAD (ATP-dependent
           RNA helicase deaD homolog) [Mycobacterium tuberculosis
           H37Rv]
 gi|13880887|gb|AAK45550.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|124600569|gb|EAY59579.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis C]
 gi|148505192|gb|ABQ73001.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis H37Ra]
 gi|148720997|gb|ABR05622.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis F11]
 gi|253321205|gb|ACT25808.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           1435]
 gi|289439590|gb|EFD22083.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           605]
 gi|289685526|gb|EFD53014.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           02_1987]
 gi|289708911|gb|EFD72927.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|289712915|gb|EFD76927.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis T85]
 gi|298494550|gb|EFI29844.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216042|gb|EFO75441.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu001]
 gi|308325627|gb|EFP14478.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu002]
 gi|308335025|gb|EFP23876.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu004]
 gi|308338833|gb|EFP27684.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu005]
 gi|308342518|gb|EFP31369.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu006]
 gi|308346383|gb|EFP35234.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu007]
 gi|308350324|gb|EFP39175.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu008]
 gi|308354954|gb|EFP43805.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu009]
 gi|308358901|gb|EFP47752.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu010]
 gi|308362864|gb|EFP51715.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu011]
 gi|308366530|gb|EFP55381.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu012]
 gi|323720210|gb|EGB29309.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CDC1551A]
 gi|326902876|gb|EGE49809.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           W-148]
 gi|328459448|gb|AEB04871.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           4207]
          Length = 563

 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 4/143 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  E++ E L  R      +  +V   +R   I  LR G  D+LV  ++   
Sbjct: 253 MIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAAR 312

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+    +  +L+ D      S    I   GRA R  +   +++       +  AI++ 
Sbjct: 313 GLDVER--ISHVLNYDIPHDTESYVHRIGRTGRAGR--SGAALIFVSPRELHLLKAIEKA 368

Query: 705 TRRREKQLEHNKKHNINPQSVKE 727
           TR+   + +     ++N Q V +
Sbjct: 369 TRQTLTEAQLPTVEDVNTQRVAK 391


>gi|323483414|ref|ZP_08088802.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
           WAL-14163]
 gi|323403268|gb|EGA95578.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
           WAL-14163]
          Length = 552

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +DL + L  R      +H ++K ++R  ++   R G+ D+L+  ++   G+D+ +
Sbjct: 252 TKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDILIATDVAARGIDVDD 311

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
              V   D   D E ++      I   GRA R
Sbjct: 312 VEAVFNYDIPQDDEYYVHR----IGRTGRAGR 339


>gi|288561345|ref|YP_003424831.1| Hef nuclease [Methanobrevibacter ruminantium M1]
 gi|288544055|gb|ADC47939.1| Hef nuclease [Methanobrevibacter ruminantium M1]
          Length = 842

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ +II+  + G +DVL+  ++  EG+DIP   LV + +      + S+  +IQ  GR  
Sbjct: 433 EQKKIIKSFKTGNYDVLISTSVAEEGIDIPAVDLVIMYEP-----VPSEVRMIQRRGRTG 487

Query: 680 RNVNSKV 686
           R  + ++
Sbjct: 488 RKSSGRM 494


>gi|260204506|ref|ZP_05771997.1| hypothetical protein MtubK8_09388 [Mycobacterium tuberculosis K85]
 gi|289573913|ref|ZP_06454140.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis K85]
 gi|289538344|gb|EFD42922.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis K85]
          Length = 563

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 4/143 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  E++ E L  R      +  +V   +R   I  LR G  D+LV  ++   
Sbjct: 253 MIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAAR 312

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+    +  +L+ D      S    I   GRA R  +   +++       +  AI++ 
Sbjct: 313 GLDVER--ISHVLNYDIPHDTESYVHRIGRTGRAGR--SGAALIFVSPRELHLLKAIEKA 368

Query: 705 TRRREKQLEHNKKHNINPQSVKE 727
           TR+   + +     ++N Q V +
Sbjct: 369 TRQTLTEAQLPTVEDVNTQRVAK 391


>gi|255522030|ref|ZP_05389267.1| hypothetical protein LmonocFSL_12560 [Listeria monocytogenes FSL
           J1-175]
          Length = 397

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 13/143 (9%)

Query: 606 NIRVRYMHSEVKTLERI--EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           ++ V   H + KT + I  +II+  R G+  VL  ++L+ EG D+P+C  V +L   +  
Sbjct: 193 SVGVTSAHIDGKTPKSIRDDIIQRFREGEIKVLCNLDLIGEGFDVPDCSTVIMLRPTQ-- 250

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
              S +  IQ   R  R    K  +  D +    +  + +  R+    LE  K  N N  
Sbjct: 251 ---SLSLYIQQSMRGMRYRTGKTAIIIDHVGNVNRFGLPDMERKW--SLEAKKGSNSNKA 305

Query: 724 SVKEKIMEVIDPILLEDAATTNI 746
               KI     P       +TNI
Sbjct: 306 EAPVKIC----PDCFMTVLSTNI 324


>gi|215426565|ref|ZP_03424484.1| hypothetical protein MtubT9_09292 [Mycobacterium tuberculosis T92]
 gi|219557147|ref|ZP_03536223.1| hypothetical protein MtubT1_07530 [Mycobacterium tuberculosis T17]
 gi|260200303|ref|ZP_05767794.1| hypothetical protein MtubT4_09273 [Mycobacterium tuberculosis T46]
 gi|289442689|ref|ZP_06432433.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T46]
 gi|289569259|ref|ZP_06449486.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T17]
 gi|289749796|ref|ZP_06509174.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T92]
 gi|289415608|gb|EFD12848.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T46]
 gi|289543013|gb|EFD46661.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T17]
 gi|289690383|gb|EFD57812.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T92]
          Length = 563

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 4/143 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  E++ E L  R      +  +V   +R   I  LR G  D+LV  ++   
Sbjct: 253 MIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAAR 312

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+    +  +L+ D      S    I   GRA R  +   +++       +  AI++ 
Sbjct: 313 GLDVER--ISHVLNYDIPHDTESYVHRIGRTGRAGR--SGAALIFVSPRELHLLKAIEKA 368

Query: 705 TRRREKQLEHNKKHNINPQSVKE 727
           TR+   + +     ++N Q V +
Sbjct: 369 TRQTLTEAQLPTVEDVNTQRVAK 391


>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040059|gb|ACT56855.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 465

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           K+   +L   L ++   V  +H  +    R++I+ + + G   ++V  +L   GLDIP+ 
Sbjct: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN------VNSKVILYADTITKSIQLAID 702
           G V   D        +    I   GRA R+      V  + I + D I K I+  +D
Sbjct: 315 GHVFNFDVPNRA--ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369


>gi|28197977|ref|NP_778291.1| transcription-repair coupling factor [Xylella fastidiosa Temecula1]
 gi|182680603|ref|YP_001828763.1| transcription-repair coupling factor [Xylella fastidiosa M23]
 gi|28056037|gb|AAO27940.1| transcription-repair coupling factor [Xylella fastidiosa Temecula1]
 gi|182630713|gb|ACB91489.1| transcription-repair coupling factor [Xylella fastidiosa M23]
          Length = 1195

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL + + E  I + +     + LER+ +  D +   F+VL+   ++  G+DIP   
Sbjct: 874 RMQRDLAQLVPEARIGIAHGQMPERELERVML--DFQKQHFNVLLSTTIIESGIDIPNAN 931

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD+ G       L Q  GR  R+
Sbjct: 932 TIIINRADRFGL----AQLHQLRGRVGRS 956


>gi|109896683|ref|YP_659938.1| ATP-dependent DNA helicase RecG [Pseudoalteromonas atlantica T6c]
 gi|109698964|gb|ABG38884.1| ATP-dependent DNA helicase RecG [Pseudoalteromonas atlantica T6c]
          Length = 691

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           ++V  +H  +K  E+  +++  + G+ D+LV   ++  G+D+P   L+ I + ++ G   
Sbjct: 516 LKVGLVHGRLKADEKQRLMQQFKDGEMDLLVATTVIEVGVDVPNASLMIIENPERLGL-- 573

Query: 667 SKTSLIQTIGRAAR-NVNSK-VILYADTITKS 696
               L Q  GR  R +V S  V++Y   ++K+
Sbjct: 574 --AQLHQLRGRVGRGSVESHCVLMYQSPLSKT 603


>gi|323701802|ref|ZP_08113473.1| primosomal protein N' [Desulfotomaculum nigrificans DSM 574]
 gi|323533338|gb|EGB23206.1| primosomal protein N' [Desulfotomaculum nigrificans DSM 574]
          Length = 734

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 152 DQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAA 207
           +Q   + QL+  I+S +    LL GVTGSGKT    + IE    + R AIV+ P   L  
Sbjct: 199 EQLTVVNQLVNAINSPKPSAWLLHGVTGSGKTEVYLRAIEHTLNLGRQAIVLVPEISLTP 258

Query: 208 QLYSEFKNFF 217
           Q+   F++ F
Sbjct: 259 QMVERFRSRF 268


>gi|323691087|ref|ZP_08105368.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           symbiosum WAL-14673]
 gi|323504856|gb|EGB20637.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           symbiosum WAL-14673]
          Length = 552

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +DL + L  R      +H ++K ++R  ++   R G+ D+L+  ++   G+D+ +
Sbjct: 252 TKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDILIATDVAARGIDVDD 311

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
              V   D   D E ++      I   GRA R
Sbjct: 312 VEAVFNYDIPQDDEYYVHR----IGRTGRAGR 339


>gi|317485703|ref|ZP_07944574.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
 gi|316923068|gb|EFV44283.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
          Length = 594

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 581 QGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           QG R  L+   TKR  +++T +L +R  +   +H ++   +R  ++   R    ++LV  
Sbjct: 239 QGFRKALVFCATKRSVDEITVHLQQRGYQADGLHGDMNQTQRDRVMSRFRTDGIEILVAT 298

Query: 640 NLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
           ++   G+D+ +   V   D   D EG++      I   GRA R
Sbjct: 299 DVAARGIDVDDVDAVINYDIPHDVEGYVHR----IGRTGRAGR 337


>gi|261417240|ref|YP_003250923.1| transcription-repair coupling factor [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373696|gb|ACX76441.1| transcription-repair coupling factor [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327048|gb|ADL26249.1| transcription-repair coupling factor [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 1132

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 12/123 (9%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG-KFDVLVGINLLREGLDIPEC 651
           ++ ED+     E  + V +   E   LER+    D  L  KFD+LV  +++  GLD+P  
Sbjct: 791 KLTEDIEAMAPEAKVAVAHGQMEDHELERV---MDAFLSRKFDILVSTSIIESGLDVPNA 847

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
             + I++A   G     + L Q  GR  R   S V+  A  +    +  I + + RR K 
Sbjct: 848 NTIIIMNAHHFGI----SQLYQMRGRVGR---SSVLAKAFLVIPQ-RGEISQESMRRLKA 899

Query: 712 LEH 714
           LE 
Sbjct: 900 LEQ 902


>gi|241747700|ref|XP_002414349.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215508203|gb|EEC17657.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 519

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 19/161 (11%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           EIN    Q  R L+ V TK     + + LY+   R    H ++   +R   +   R GK 
Sbjct: 336 EINAEGDQ--RTLIFVATKARVVTIVQNLYKNGFRAVATHGDLSQNKRDIALDRFRSGKT 393

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLD+ +  +  +++ D      S    I   GR+ R+  +  +   D  
Sbjct: 394 PILVATDVAARGLDVSD--IKYVINYDYPDTSESYVHRIGRTGRSNRSGTAITLFTPDNA 451

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
            ++ QL            +    K  +NP+     ++E++D
Sbjct: 452 GQAKQLV----------SVLQEAKQEVNPE-----LLELVD 477


>gi|196247674|ref|ZP_03146376.1| ATP-dependent DNA helicase RecG [Geobacillus sp. G11MC16]
 gi|196212458|gb|EDY07215.1| ATP-dependent DNA helicase RecG [Geobacillus sp. G11MC16]
          Length = 682

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           Y Y     V  MH  +   E+  ++R     +  VLV   ++  G+++P   ++ I DA+
Sbjct: 496 YYYRGKYEVGLMHGRLSADEKEAVMRAFSENRIHVLVSTTVVEVGVNVPNATVMVIYDAE 555

Query: 661 KEGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691
           + G       L Q  GR  R +  S  IL AD
Sbjct: 556 RFGL----AQLHQLRGRVGRGDAQSYCILIAD 583


>gi|172355315|ref|NP_001116485.1| endoribonuclease Dicer-1 [Apis mellifera]
 gi|170181362|gb|ACB11577.1| dicer-1 CG4792-PA-like protein [Apis mellifera]
          Length = 1946

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 7/80 (8%)

Query: 601 YLYERNIR-VRYMHS-EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           Y  E+NI  + Y    E++  ++ E+++  R+ + ++L+  ++L EG+DIP+C  V   D
Sbjct: 473 YTIEKNIDDISYSKDLEIEHRKQEEVLKRFRIHECNILISTSILEEGIDIPKCNFVMRYD 532

Query: 659 ADKEGFLRSKTSLIQTIGRA 678
                F ++  S +Q   RA
Sbjct: 533 -----FPKTYQSYVQCKSRA 547


>gi|222479976|ref|YP_002566213.1| type III restriction protein res subunit [Halorubrum lacusprofundi
           ATCC 49239]
 gi|222452878|gb|ACM57143.1| type III restriction protein res subunit [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 470

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DL   L ER + +  + +E    ER EI+   R G +  +V  N+L EG+D+P+  +  +
Sbjct: 365 DLVYRLSERFL-LPAITAETGAKERREILERFREGTYGRVVAANVLDEGVDVPDANVAVV 423

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADTITKSIQLAIDETTRRR 708
           L         S+    Q +GR  R  +   + ILY    T++ +  +   +RRR
Sbjct: 424 LSGSG-----SEREFTQRLGRVLRPKDDGGRAILYEVVSTETAEERV--ASRRR 470


>gi|165933497|ref|YP_001650286.1| transcription-repair coupling factor [Rickettsia rickettsii str.
           Iowa]
 gi|13235395|emb|CAC33672.1| Mfd protein [Rickettsia rickettsii]
 gi|165908584|gb|ABY72880.1| transcription-repair coupling factor [Rickettsia rickettsii str.
           Iowa]
          Length = 1122

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           E++ +   GKFD+LV   ++  G+DI E   + I +AD  G     + L Q  GR  R
Sbjct: 834 EVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGL----SQLYQLRGRIGR 887



 Score = 37.7 bits (86), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 23/187 (12%)

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYV 238
           F +    + +++  I+ A N+  A QLY +   F  +  + YF SY    YD+  P A +
Sbjct: 14  FAIDNFTKNLKQDFILSASNEEEALQLYKQALFFSSNENIYYFPSYNTIPYDHTSPNANI 73

Query: 239 P--RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
              R +T I K ++ N   +++  + T +LL +              +   + +S+  ++
Sbjct: 74  LSRRAETLI-KLTTNNSNSNKLLITHTANLLNK--------------LPPKDFFSKYFLK 118

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L         EL   LV+  + R    I  G F V G+ I+I  S  +  A+R+      
Sbjct: 119 LSPKMKFTTDELAMFLVENCFTRNASSIDAGEFAVRGEIIDIILSGPK--AYRIHFSWGY 176

Query: 357 IEEISEF 363
           IE I EF
Sbjct: 177 IESIKEF 183


>gi|24584399|ref|NP_723899.1| vasa [Drosophila melanogaster]
 gi|12644110|sp|P09052|VASA1_DROME RecName: Full=ATP-dependent RNA helicase vasa, isoform A; AltName:
           Full=Antigen Mab46F11
 gi|7298204|gb|AAF53438.1| vasa [Drosophila melanogaster]
          Length = 661

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 38/74 (51%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I + ++Q    ++ V TKR A+ L  +L E+      +H +    +R + +RD + G   
Sbjct: 482 IEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMK 541

Query: 635 VLVGINLLREGLDI 648
           VL+  ++   GLDI
Sbjct: 542 VLIATSVASRGLDI 555


>gi|120597666|ref|YP_962240.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120557759|gb|ABM23686.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 550

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 16/122 (13%)

Query: 553 GLVDPPVEI-----RSARTQVEDVYDEINLAAQQGL-----------RILLTVLTKRMAE 596
           GLV+ PVEI      +A T V+     ++   +  L           ++L+   TK  A 
Sbjct: 209 GLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKSALLTQLIKQHDWQQVLVFSRTKHGAN 268

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            L + L E  I+   +H       R + + D + G+  VLV  ++   GLDI +   V  
Sbjct: 269 RLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVATDIAARGLDIDQLPQVVN 328

Query: 657 LD 658
            D
Sbjct: 329 FD 330


>gi|157828769|ref|YP_001495011.1| transcription-repair coupling factor [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|157801250|gb|ABV76503.1| transcription-repair coupling factor [Rickettsia rickettsii str.
           'Sheila Smith']
          Length = 1122

 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           E++ +   GKFD+LV   ++  G+DI E   + I +AD  G     + L Q  GR  R
Sbjct: 834 EVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGL----SQLYQLRGRIGR 887



 Score = 37.7 bits (86), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 23/187 (12%)

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY----YDYYQPEAYV 238
           F +    + +++  I+ A N+  A QLY +   F  +  + YF SY    YD+  P A +
Sbjct: 14  FAIDNFTKNLKQDFILSASNEEEALQLYKQALFFSSNENIYYFPSYNTIPYDHTSPNANI 73

Query: 239 P--RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
              R +T I K ++ N   +++  + T +LL +              +   + +S+  ++
Sbjct: 74  LSRRAETLI-KLTTNNSNSNKLLITHTANLLNK--------------LPPKDFFSKYFLK 118

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L         EL   LV+  + R    I  G F V G+ I+I  S  +  A+R+      
Sbjct: 119 LSPKMKFTTDELAMFLVENCFTRNASSIDAGEFAVRGEIIDIILSGPK--AYRIHFSWGY 176

Query: 357 IEEISEF 363
           IE I EF
Sbjct: 177 IESIKEF 183


>gi|228982575|ref|ZP_04142834.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis Bt407]
 gi|228776758|gb|EEM25066.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis Bt407]
          Length = 604

 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 73/144 (50%), Gaps = 13/144 (9%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V I S    VE+ Y       Q  L    +VL K+  E++TE      I+V Y+  ++K 
Sbjct: 225 VAIFSLLMAVENGY-------QGALMCPTSVLAKQHYEEITERFSSFGIKVAYLSGDMKV 277

Query: 619 LERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            ER ++++ ++ G+ D++VG + +L + ++     L  + +  + G    +  L+Q   +
Sbjct: 278 RERKKVVKAIKEGEVDIVVGTHAVLSKDVEFQSLALTIVDEEHRFGV--KQRELLQL--K 333

Query: 678 AARNVNSKVILYADTITKSIQLAI 701
           A++ V++ + + A  I +S+ L I
Sbjct: 334 ASKGVHT-ISMSATPIPRSLALTI 356


>gi|195376137|ref|XP_002046853.1| GJ12262 [Drosophila virilis]
 gi|194154011|gb|EDW69195.1| GJ12262 [Drosophila virilis]
          Length = 778

 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 16/129 (12%)

Query: 567 QVEDVYDE-----------INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           Q+ DV DE             ++ +   + ++ V TK+  +++T  +  +  R   +H +
Sbjct: 363 QIVDVCDESEKIVKLIQLLTQISGENETKTIIFVETKKRVDEITRNISRQGWRACAIHGD 422

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
               ER  ++   R G+  +LV  ++   GLD+ +   V   D     +  +    +  I
Sbjct: 423 KSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYD-----YPSNSEDYVHRI 477

Query: 676 GRAARNVNS 684
           GR  R+ N+
Sbjct: 478 GRTGRSNNT 486


>gi|118586395|ref|ZP_01543844.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
 gi|118433182|gb|EAV39899.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
          Length = 509

 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT+ L  R  +   +H ++    R+  +R  + G+   LV  ++   GLDI  
Sbjct: 236 TKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARGLDI-- 293

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 294 SGVTHVYNYD---VPQDPESYVHRIGRTGR 320


>gi|134293431|ref|YP_001117167.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134136588|gb|ABO57702.1| ATP dependent helicase, Lhr family [Burkholderia vietnamiensis G4]
          Length = 1505

 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 7/129 (5%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSE 615
           P+E   A    + VYD I   A      L+ V T+R AE +  +L ER  +  +   H  
Sbjct: 258 PLEPVMATDVWDQVYDRIAALAAAHRTTLVFVNTRRTAERMARHLAERLGKDAIAAHHGS 317

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R    + L+ G+  +LV    L  G+DI +  LV      + G  R     +Q +
Sbjct: 318 LAKEHRFVAEQRLKRGELKLLVATASLELGIDIGDVDLVC-----QVGSPRGIAPFLQRV 372

Query: 676 GRAARNVNS 684
           GR+  +V  
Sbjct: 373 GRSGHHVGG 381


>gi|332708716|ref|ZP_08428688.1| ATP-dependent DNA helicase RecG [Lyngbya majuscula 3L]
 gi|332352570|gb|EGJ32138.1| ATP-dependent DNA helicase RecG [Lyngbya majuscula 3L]
          Length = 828

 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKV-QLLLGVTGSGKTFTMA-KVIEAMQRP--A 196
           F     +  +G Q   I ++LK + S   + +L+ G  GSGKT      +I A+Q    A
Sbjct: 395 FNQLLPFELTGAQTRVINEILKDMESETPMNRLVQGDVGSGKTIVAVYAIIAAIQSGYQA 454

Query: 197 IVMAPNKILAAQLYSEFKNFF 217
            +MAP ++LA Q Y +  N+F
Sbjct: 455 ALMAPTEVLAEQHYRKLVNWF 475


>gi|300786077|ref|YP_003766368.1| ATP-dependent DNA helicase RecQ [Amycolatopsis mediterranei U32]
 gi|299795591|gb|ADJ45966.1| ATP-dependent DNA helicase RecQ [Amycolatopsis mediterranei U32]
          Length = 540

 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 6/112 (5%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +AA  G  +L T  ++R  ED  E L  R +R    H+ +K  +R  +      G+ DV+
Sbjct: 231 VAAMPGSGLLYTA-SRRETEDYAEALSGRGVRAFAYHAGMKAADRDAVHERFAAGETDVV 289

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  +    G+D P+   V            S  +  Q IGRA R+     +L
Sbjct: 290 VATSAFGMGIDQPDVRFVV-----HASVPDSVDTYYQQIGRAGRDGEPAEVL 336


>gi|302508367|ref|XP_003016144.1| ATP-dependent RNA helicase, putative [Arthroderma benhamiae CBS
           112371]
 gi|291179713|gb|EFE35499.1| ATP-dependent RNA helicase, putative [Arthroderma benhamiae CBS
           112371]
          Length = 528

 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 597 DLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           DL E +  R + RV  +HS +   ER+  +   R     +LV  ++   GLDIP  GLV 
Sbjct: 367 DLLERILRRLSHRVTSLHSLLPQSERVANLSRFRASAARLLVATDVAARGLDIPSVGLVI 426

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR 680
             D       R+    I  +GR AR
Sbjct: 427 NYDVP-----RNPDDYIHRVGRTAR 446


>gi|255729868|ref|XP_002549859.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240132928|gb|EER32485.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 681

 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+  +T     +L      + I  +Y+ +    + R EI+ D + GK  +L  + +  EG
Sbjct: 277 LIFCVTIEHCHELCGLFQSQGIDAQYVSANTTRIAREEIVEDFKNGKIPILCNVGVFTEG 336

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            DIP    + +          S+T  +Q IGR  R+   K
Sbjct: 337 TDIPNIDSIILARP-----TLSQTLKVQMIGRGLRHYPGK 371


>gi|226949848|ref|YP_002804939.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A2 str.
           Kyoto]
 gi|226841536|gb|ACO84202.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A2 str.
           Kyoto]
          Length = 679

 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y + + +  +H ++K  E+  I++D + GK   L+   ++  G+++P   L+ I +A++ 
Sbjct: 497 YFKEVEIAILHGKMKGKEKDTIMKDFKEGKIKALISTTVIEVGVNVPNATLMVIENAERF 556

Query: 663 GFLRSKTSLIQTIGRAAR 680
           G       L Q  GR  R
Sbjct: 557 GL----AQLHQLRGRVGR 570


>gi|213023601|ref|ZP_03338048.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 359

 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +VLV  ++  
Sbjct: 250 RSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DIP+   V   D       RS  + +  IGR  R
Sbjct: 310 RGIDIPDVSHVINFD-----MPRSGDTYLHRIGRTGR 341


>gi|196016401|ref|XP_002118053.1| hypothetical protein TRIADDRAFT_33552 [Trichoplax adhaerens]
 gi|190579356|gb|EDV19453.1| hypothetical protein TRIADDRAFT_33552 [Trichoplax adhaerens]
          Length = 524

 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+L         +H +    +R + +R  R G   +LV   +   G
Sbjct: 367 LVFVETKKGADSLQEFLVRMGYYSTAIHGDRSQRDREDALRAFRAGVRPILVATAVAARG 426

Query: 646 LDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
           LDIP    V   D  +D E ++    +T  +  +G A    N K
Sbjct: 427 LDIPNVAHVINFDLPSDIEEYVHRIGRTGRVGNVGTATSFFNEK 470


>gi|99032027|pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032028|pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032029|pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032030|pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
          Length = 434

 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 38/74 (51%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I + ++Q    ++ V TKR A+ L  +L E+      +H +    +R + +RD + G   
Sbjct: 293 IEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMK 352

Query: 635 VLVGINLLREGLDI 648
           VL+  ++   GLDI
Sbjct: 353 VLIATSVASRGLDI 366


>gi|68070073|ref|XP_676948.1| ATP-dependent DNA helicase [Plasmodium berghei strain ANKA]
 gi|56496869|emb|CAH99540.1| ATP-dependent DNA helicase, putative [Plasmodium berghei]
          Length = 735

 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V +K+  E++  +L +R + VR  HS++   E+ E        +  +++       G
Sbjct: 285 LIYVNSKKDCENIYNFLNDRGLLVRMYHSDLTNEEKREAHEMFLKDEIQIVIATVAFGMG 344

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILY 689
           +D P+   +        GF RS  + +Q +GRA R+  N++ IL+
Sbjct: 345 IDKPDIRRII-----HYGFSRSLEAYVQQVGRAGRDGGNAEAILF 384


>gi|9955400|dbj|BAB12216.1| vasa homolog [Ciona savignyi]
          Length = 688

 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 5/109 (4%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I+  A+   R L+ V TKR A+ L   L +       +H +    ER + +RD +     
Sbjct: 478 ISDVAETRSRTLVFVETKRGADFLACMLSQEGCPTTSIHGDRLQQEREQALRDFKSAVCP 537

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +L+  ++   GLDIP+   V   D  KE         +  IGR  R  N
Sbjct: 538 ILIATSVAARGLDIPKVEHVINYDMPKE-----IDEYVHRIGRTGRCGN 581


>gi|71275507|ref|ZP_00651793.1| Transcription-repair coupling factor [Xylella fastidiosa Dixon]
 gi|71900755|ref|ZP_00682876.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1]
 gi|170729284|ref|YP_001774717.1| transcription-repair coupling factor [Xylella fastidiosa M12]
 gi|71163807|gb|EAO13523.1| Transcription-repair coupling factor [Xylella fastidiosa Dixon]
 gi|71729485|gb|EAO31595.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1]
 gi|167964077|gb|ACA11087.1| transcription-repair coupling factor [Xylella fastidiosa M12]
          Length = 1193

 Score = 38.1 bits (87), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL + + E  I + +     + LER+ +  D +   F+VL+   ++  G+DIP   
Sbjct: 872 RMQRDLAQLVPEARIGIAHGQMPERELERVML--DFQKQHFNVLLSTTIIESGIDIPNAN 929

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD+ G       L Q  GR  R+
Sbjct: 930 TIIINRADRFGL----AQLHQLRGRVGRS 954


>gi|324509250|gb|ADY43894.1| ATP-dependent RNA helicase DDX49 [Ascaris suum]
          Length = 203

 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
             +V  +HS++   ER+  +   R G+  +L+  ++   GLDIP   LV           
Sbjct: 6   GFQVGSLHSQISQQERLSSLTRFRCGRIRILICTDVAARGLDIPHVDLVV-----NHNVP 60

Query: 666 RSKTSLIQTIGRAAR 680
           RS  + +  +GR+AR
Sbjct: 61  RSPKTYVHRVGRSAR 75


>gi|289624077|ref|ZP_06457031.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 571

 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VL+   ++  G+D+P  
Sbjct: 247 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 304

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 305 NTIIIERADKFGL----AQLHQLRGRVGRS 330


>gi|260663734|ref|ZP_05864622.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
 gi|260551785|gb|EEX24901.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
          Length = 495

 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++L+  L  R      +H ++    R +I+R  + G  D+LV  ++   GLDI  
Sbjct: 251 TKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILVATDVAARGLDI-- 308

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+  + + D         S +  IGR  R  +  V L
Sbjct: 309 SGVTHVYNYD---IPSDPDSYVHRIGRTGRAGHHGVSL 343


>gi|254577027|ref|XP_002494500.1| ZYRO0A02948p [Zygosaccharomyces rouxii]
 gi|238937389|emb|CAR25567.1| ZYRO0A02948p [Zygosaccharomyces rouxii]
          Length = 557

 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 10/99 (10%)

Query: 585 ILLTVLTKRMAEDLTEYLY-ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           I++ +  KR A+ L +  Y E   +V  ++      +R + ++ LR GK  +++  N+  
Sbjct: 409 IIIFINYKRAADWLVQKFYKETQYKVTVLYGSKSQEQREQSLQLLRKGKVQIMIATNVAA 468

Query: 644 EGLDIPECGLVAILDADKEGFLRSKT--SLIQTIGRAAR 680
            GLD+P+  LV         F  SKT    +  IGR  R
Sbjct: 469 RGLDVPDVSLVI-------NFQLSKTFEDYVHRIGRTGR 500


>gi|229551616|ref|ZP_04440341.1| transcription-repair coupling factor [Lactobacillus rhamnosus
           LMS2-1]
 gi|229315020|gb|EEN80993.1| transcription-repair coupling factor [Lactobacillus rhamnosus
           LMS2-1]
          Length = 1182

 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y H ++   +   +I D   G +DVLV   ++  G+D+P    + I +AD  G L   
Sbjct: 863 IGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYG-LSQL 921

Query: 669 TSLIQTIGRAAR 680
             L   IGR++R
Sbjct: 922 YQLRGRIGRSSR 933



 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 45/235 (19%), Positives = 103/235 (43%), Gaps = 19/235 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
            L+ G++GS KT     +++  ++  +++  N+  A +L ++  +      V      YD
Sbjct: 32  HLVTGLSGSAKTVFFGALLQQQKKQLLIVENNRFHADELAADLSSLLGDALV------YD 85

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC---IYGIGSV 287
           +  P   V   +  +    + N++I+     A   +      I+V+S++    I    + 
Sbjct: 86  F--PVEDVLAAEVAVSSPETRNDRIN-----ALTFIQSGQPGIIVTSLAGYKRILPAPAA 138

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
            + S+++V +     ++ + +   LV   Y+R  +    G F + G  I+I+P + +D  
Sbjct: 139 WAASELVVDMD--SELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDIYPLNQDD-P 195

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            R+ +F  +I+ I  F   T + ++ ++ I I   +  +     L  A   I ++
Sbjct: 196 IRIELFDTEIDSIRSFDIATQRSLKKLDQIVIAPATDMIASDQVLTDAGARIGKQ 250


>gi|50083665|ref|YP_045175.1| primosomal protein N' [Acinetobacter sp. ADP1]
 gi|49529641|emb|CAG67353.1| primosomal protein N' (= factor Y) directs replication fork
           assembly at D-loops, ATP-dependent [Acinetobacter sp.
           ADP1]
          Length = 743

 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA---IVMAPNKIL 205
           P+ DQ  AI ++LK +H  +   LL G+TGSGKT    +++  + +     +V+ P   L
Sbjct: 210 PNPDQHNAIQRVLKSLHHYQAF-LLDGLTGSGKTEVYLQIMHEVLKQGKQVLVLVPEIGL 268

Query: 206 AAQLYSEFKNFF 217
             Q  S FK+ F
Sbjct: 269 TPQTISRFKSRF 280


>gi|71899709|ref|ZP_00681861.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1]
 gi|71730504|gb|EAO32583.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1]
          Length = 1195

 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL + + E  I + +     + LER+ +  D +   F+VL+   ++  G+DIP   
Sbjct: 874 RMQRDLAQLVPEARIGIAHGQMPERELERVML--DFQKQHFNVLLSTTIIESGIDIPNAN 931

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD+ G       L Q  GR  R+
Sbjct: 932 TIIINRADRFGL----AQLHQLRGRVGRS 956


>gi|332162083|ref|YP_004298660.1| transcription-repair coupling factor [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325666313|gb|ADZ42957.1| transcription-repair coupling factor [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 1148

 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 58/296 (19%), Positives = 126/296 (42%), Gaps = 35/296 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE    P +++ P+   A +L  E + F PH      V+    ++  
Sbjct: 22  LTGSACAVECAEIIERHDGPVMLITPDMQTALRLRDEIQQFSPHP-----VNTLSDWETL 76

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            Y    D++   +  I+ ++  + H  T   +ER   I++   + +  +   E      +
Sbjct: 77  PY----DSFSPHQDIISARLSCLYHLPT---MERG-VIILPINTLMQRVCPHEFLHGHAL 128

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K G  + + +L + L +  Y+  D  +  G F   G  ++++P   E+  +R+  F +
Sbjct: 129 VMKKGQHLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEE-PYRIDFFDD 187

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ +  F   + + +  V+ I +     +   +  +       +E+ ++R         
Sbjct: 188 DIDSLRVFDVDSQRTLSEVDQINLLPAHEFPIDKNAIELFRSQWREQFEVR--------- 238

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             +A+ + Q+++  +           IE +          +P PTLF Y+PE++LL
Sbjct: 239 -RDAEHIYQQVSKGI-------WPAGIEYWQPLFF----NQPLPTLFSYLPENTLL 282


>gi|322806762|emb|CBZ04331.1| ATP-dependent DNA helicase RecG [Clostridium botulinum H04402 065]
          Length = 679

 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y + + +  +H ++K  E+  I++D + GK   L+   ++  G+++P   L+ I +A++ 
Sbjct: 497 YFKEVEIAILHGKMKGKEKDTIMKDFKEGKIKALISTTVIEVGVNVPNATLMVIENAERF 556

Query: 663 GFLRSKTSLIQTIGRAAR 680
           G       L Q  GR  R
Sbjct: 557 GL----AQLHQLRGRVGR 570


>gi|304407700|ref|ZP_07389351.1| helicase domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304343183|gb|EFM09026.1| helicase domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 775

 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 24/187 (12%)

Query: 564 ARTQVEDVYD-EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           AR  + D+   ++  +  +G +  + V   R AE L   L      +    +  +  ER 
Sbjct: 591 ARQSIPDLLRRKLQASIDRGAQCFIFVQQIRHAEPLAALLRRAMPNLPIGATSSQDAERS 650

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E +   R  K  +LV   +L  G+ +P    V ILDAD  G L  + SL+Q  GRA R+ 
Sbjct: 651 EHVVMFRERKLRMLVTTTILERGVTVPNSD-VFILDAD--GKLFDEASLVQMSGRAGRSK 707

Query: 683 N---SKVILYADTITKSIQLAIDETT-----------------RRREKQLEHNKKHNINP 722
           +    +V   A   ++  + AI + T                 R R  +  H+++ +  P
Sbjct: 708 DDPAGRVYFCASNRSEPQRRAIKQITSMNKEASVRGFLLPSAERARPPKASHSQQQSTRP 767

Query: 723 QSVKEKI 729
            S + ++
Sbjct: 768 ISKRGRL 774


>gi|298708697|emb|CBJ49194.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 662

 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 12/108 (11%)

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           E L E    V   H ++  LER+  +  LR G+  +LV  +L   G+D+P    +  ++ 
Sbjct: 531 EALAEEGFSVVPYHKDIVPLERLANLHALRSGRAKILVCTDLAARGIDVPSVTNIVQMEM 590

Query: 660 DKEGFLRSKTSLIQ---TIGRAAR-NVNSKVILYADTITKSIQLAIDE 703
                    T+++Q    +GRAAR     K   + D +TK +  +I E
Sbjct: 591 --------ATNVVQHLHRLGRAARAGRTGKATNFYDDLTKDLVNSITE 630


>gi|291522023|emb|CBK80316.1| transcription-repair coupling factor [Coprococcus catus GD/7]
          Length = 1178

 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y H ++   E  +I+     G+ DVLV   ++  GLDI     + I DADK G     
Sbjct: 866 VAYAHGQMSERELEKIMYQFINGEIDVLVSTTIIETGLDISNVNTMIIHDADKLGL---- 921

Query: 669 TSLIQTIGRAARN 681
           + L Q  GR  R+
Sbjct: 922 SQLYQLRGRVGRS 934


>gi|289548721|ref|YP_003473709.1| DEAD/DEAH box helicase [Thermocrinis albus DSM 14484]
 gi|289182338|gb|ADC89582.1| DEAD/DEAH box helicase domain protein [Thermocrinis albus DSM
           14484]
          Length = 365

 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 38/71 (53%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++ V TK+ A+DL E L  +      +H ++   +R   ++  R GK  ++V  ++  
Sbjct: 242 KVIVFVKTKKDAKDLHEVLRRKGFNAVALHGDMTQRQRESALKLFRDGKVKIVVATDVAS 301

Query: 644 EGLDIPECGLV 654
            GLDI   GLV
Sbjct: 302 RGLDIKGVGLV 312


>gi|256846084|ref|ZP_05551542.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_36A2]
 gi|256719643|gb|EEU33198.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_36A2]
          Length = 689

 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 21/92 (22%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N ++  +H ++K  E+ +++   +  ++D+L+   ++  G+D+P   ++ I +A++ G  
Sbjct: 511 NKKIGIIHGKMKAKEKDDVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFGL- 569

Query: 666 RSKTSLIQTIGRAARNVN-SKVILYADTITKS 696
              ++L Q  GR  R    S   L +++IT++
Sbjct: 570 ---SALHQLRGRVGRGSKQSYCFLISNSITEN 598


>gi|237742689|ref|ZP_04573170.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 4_1_13]
 gi|294784786|ref|ZP_06750074.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_27]
 gi|229430337|gb|EEO40549.1| ATP-dependent DNA helicase recG [Fusobacterium sp. 4_1_13]
 gi|294486500|gb|EFG33862.1| ATP-dependent DNA helicase RecG [Fusobacterium sp. 3_1_27]
          Length = 689

 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 21/92 (22%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N ++  +H ++K  E+ +++   +  ++D+L+   ++  G+D+P   ++ I +A++ G  
Sbjct: 511 NKKIGIIHGKMKAKEKDDVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFGL- 569

Query: 666 RSKTSLIQTIGRAARNVN-SKVILYADTITKS 696
              ++L Q  GR  R    S   L +++IT++
Sbjct: 570 ---SALHQLRGRVGRGSKQSYCFLISNSITEN 598


>gi|254445656|ref|ZP_05059132.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198259964|gb|EDY84272.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 426

 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 2/112 (1%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+   TK  A+ +T  L   + +V  +HS+    ER   ++  + G+++VLV  ++   
Sbjct: 269 VLIFTRTKFNADMITRRLERLDHKVAALHSDRSQSERTAALKGFKDGRYEVLVATDIAAR 328

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           GLDI   G+  +++ D           I   GRA++  ++  +L  D +  +
Sbjct: 329 GLDI--AGVTHVINYDVPLHAEDYVHRIGRTGRASKEGDAFTLLTEDEVKNA 378


>gi|126308848|ref|XP_001379329.1| PREDICTED: similar to DDX5 protein [Monodelphis domestica]
          Length = 865

 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 594 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 653

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 654 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 689


>gi|124026185|ref|YP_001015301.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           NATL1A]
 gi|123961253|gb|ABM76036.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           NATL1A]
          Length = 589

 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           +T  +AE L  Y Y     V  ++ ++   +R   +  LR G  ++LV  ++   GLD+ 
Sbjct: 287 ITIVVAEKLESYGYN----VAVLNGDIPQNQRERTVERLRQGSINILVATDVAARGLDVD 342

Query: 650 ECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             GLV   D   D+E ++      I   GRA R  N + IL+ +   +S 
Sbjct: 343 RIGLVINYDMPFDREAYVHR----IGRTGRAGR--NGEAILFVNPRERSF 386


>gi|258540716|ref|YP_003175215.1| transcription-repair coupling factor [Lactobacillus rhamnosus Lc
           705]
 gi|257152392|emb|CAR91364.1| Transcription-repair coupling factor [Lactobacillus rhamnosus Lc
           705]
          Length = 1175

 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + Y H ++   +   +I D   G +DVLV   ++  G+D+P    + I +AD  G L   
Sbjct: 856 IGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYG-LSQL 914

Query: 669 TSLIQTIGRAAR 680
             L   IGR++R
Sbjct: 915 YQLRGRIGRSSR 926



 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 45/235 (19%), Positives = 103/235 (43%), Gaps = 19/235 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
            L+ G++GS KT     +++  ++  +++  N+  A +L ++  +      V      YD
Sbjct: 25  HLVTGLSGSAKTVFFGALLQQQKKQLLIVENNRFHADELAADLSSLLGDALV------YD 78

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC---IYGIGSV 287
           +  P   V   +  +    + N++I+     A   +      I+V+S++    I    + 
Sbjct: 79  F--PVEDVLAAEVAVSSPETRNDRIN-----ALTFIQSGQPGIIVTSLAGYKRILPAPAA 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
            + S+++V +     ++ + +   LV   Y+R  +    G F + G  I+I+P + +D  
Sbjct: 132 WAASELVVDMD--SELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDIYPLNQDD-P 188

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            R+ +F  +I+ I  F   T + ++ ++ I I   +  +     L  A   I ++
Sbjct: 189 IRIELFDTEIDSIRSFDIATQRSLKKLDQIVIAPATDMIASDQVLTDAGARIGKQ 243


>gi|197260666|gb|ACH56833.1| translation initiation factor 4F helicase subunit [Simulium
           vittatum]
          Length = 236

 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+R  + LT+ + E+N     +H ++   +R  I++  R G   +L+  +LL  G+D+ +
Sbjct: 111 TRRXVDQLTQDMTEKNFTASALHGDMDQRDREIIMKQFRTGSSRILITTDLLARGIDVQQ 170

Query: 651 CGLVAILD--ADKEGFL 665
             LV   D  +++E ++
Sbjct: 171 VSLVINYDLPSNRENYI 187


>gi|195491693|ref|XP_002093672.1| pavarotti [Drosophila yakuba]
 gi|194179773|gb|EDW93384.1| pavarotti [Drosophila yakuba]
          Length = 887

 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 65/162 (40%), Gaps = 41/162 (25%)

Query: 88  EKQTREISEQTMTP-SVQALARLIQSDNPL----LKNG---------KIWTPHRSWSINN 133
           EKQ R+ S++   P +V    R +QSD  L    +KN          ++   H+  + N 
Sbjct: 23  EKQRRDTSDKARDPVNVFCRVRPLQSDGDLTSLRVKNSTTIALNPQDQLLQHHKPHNANQ 82

Query: 134 HSKDITF---FQ---MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA- 186
                 F   FQ    Q D + S  QP  +  LLKG   R  +    GVTGSGKT+TM  
Sbjct: 83  REIQYIFKHVFQPDATQQDVYASVAQPL-VENLLKG---RNSLLFTYGVTGSGKTYTMTG 138

Query: 187 ----------------KVIEAMQRPAIVMAPNKILAAQLYSE 212
                           + I   Q    V  P+K+   ++ SE
Sbjct: 139 NLRHRGIMPRCLDVLFRTISDYQAKKFVFKPDKLNGFEILSE 180


>gi|195150547|ref|XP_002016212.1| GL10619 [Drosophila persimilis]
 gi|194110059|gb|EDW32102.1| GL10619 [Drosophila persimilis]
          Length = 1720

 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 25/117 (21%), Positives = 62/117 (52%), Gaps = 15/117 (12%)

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I   R G+ +++V  ++L EG+D+  C  V ILD      +++    +QT GR AR+ ++
Sbjct: 450 IHQFRDGEANLMVCSSVLEEGIDVKACNYVLILDP-----IKTFNMYVQTKGR-ARSKDA 503

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           + +L++  + +          +  ++  ++ + H    + +K+++++  +P++ E A
Sbjct: 504 QFVLFSSDLDR---------IKTNQQINQYRQAHTDIGEYLKDRVLDRAEPLMQEIA 551


>gi|189188460|ref|XP_001930569.1| ATP-dependent RNA helicase DBP8 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187972175|gb|EDU39674.1| ATP-dependent RNA helicase DBP8 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 514

 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 598 LTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           L EY+    + RV  +HS +K  +R+  +   R     +LV  ++   GLDIPE  LV  
Sbjct: 353 LLEYMLRLLDHRVTALHSGLKQSDRVSNLARFRAQAARILVATDVAARGLDIPEVALVIN 412

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR 680
            D       R     I  +GR AR
Sbjct: 413 FDVP-----RDPDDYIHRVGRTAR 431


>gi|111225168|ref|YP_715962.1| ATP-dependent DNA helicase recG [Frankia alni ACN14a]
 gi|111152700|emb|CAJ64443.1| ATP-dependent DNA helicase recG [Frankia alni ACN14a]
          Length = 725

 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 10/97 (10%)

Query: 591 TKRMAEDLTEYLYE------RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           T R A  +T+ L +        +RV  +H  +   +R   +     G+ DVLV   ++  
Sbjct: 520 TGRPAATVTDVLPQLMDGELAGLRVEPLHGRLPAAQREATMTRFAQGEIDVLVATTVIEV 579

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           G+++P   ++ +LDAD+ G     + L Q  GR  R 
Sbjct: 580 GVNVPNATVMVVLDADRFGV----SQLHQLRGRVGRG 612


>gi|29830698|ref|NP_825332.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29607811|dbj|BAC71867.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 502

 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +AA+ G R+++ + TK   + LTE+L    +R   +H      +R   +   + G   VL
Sbjct: 301 IAARDG-RVIMFLDTKHAVDRLTEHLLSSGVRAAALHGGKSQPQRNRTLSQFKTGHVTVL 359

Query: 637 VGINLLREGLDIPECGLVAILD 658
           V  N+   G+ +    LV  +D
Sbjct: 360 VATNVAARGIHVDNLDLVVNVD 381


>gi|15836650|ref|NP_297338.1| transcription-repair coupling factor [Xylella fastidiosa 9a5c]
 gi|9104811|gb|AAF82858.1|AE003858_12 transcription-repair coupling factor [Xylella fastidiosa 9a5c]
          Length = 1193

 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL + + E  I + +     + LER+ +  D +   F+VL+   ++  G+DIP   
Sbjct: 872 RMQRDLAQLVPEARIGIAHGQMPERELERVML--DFQKQHFNVLLSTTIIESGIDIPNAN 929

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + I  AD+ G       L Q  GR  R+
Sbjct: 930 TIIINRADRFGL----AQLHQLRGRVGRS 954


>gi|116491614|ref|YP_811158.1| superfamily II DNA/RNA helicase [Oenococcus oeni PSU-1]
 gi|116092339|gb|ABJ57493.1| Superfamily II DNA and RNA helicase [Oenococcus oeni PSU-1]
          Length = 521

 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT+ L  R  +   +H ++    R+  +R  + G+   LV  ++   GLDI  
Sbjct: 248 TKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARGLDI-- 305

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D     +   S +  IGR  R
Sbjct: 306 SGVTHVYNYD---VPQDPESYVHRIGRTGR 332


>gi|319427540|gb|ADV55614.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 539

 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 16/122 (13%)

Query: 553 GLVDPPVEI-----RSARTQVEDVYDEINLAAQQGL-----------RILLTVLTKRMAE 596
           GLV+ PVEI      +A T V+     ++   +  L           ++L+   TK  A 
Sbjct: 198 GLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKSALLTQLIKQHDWQQVLVFSRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            L + L E  I+   +H       R + + D + G+  VLV  ++   GLDI +   V  
Sbjct: 258 RLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVATDIAARGLDIDQLPQVVN 317

Query: 657 LD 658
            D
Sbjct: 318 FD 319


>gi|318606131|emb|CBY27629.1| transcription-repair coupling factor [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 1148

 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 58/296 (19%), Positives = 126/296 (42%), Gaps = 35/296 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE    P +++ P+   A +L  E + F PH      V+    ++  
Sbjct: 22  LTGSACAVECAEIIERHDGPVMLITPDMQTALRLRDEIQQFSPHP-----VNTLSDWETL 76

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            Y    D++   +  I+ ++  + H  T   +ER   I++   + +  +   E      +
Sbjct: 77  PY----DSFSPHQDIISARLSCLYHLPT---MERG-VIILPINTLMQRVCPHEFLHGHAL 128

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K G  + + +L + L +  Y+  D  +  G F   G  ++++P   E+  +R+  F +
Sbjct: 129 VMKKGQHLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEE-PYRIDFFDD 187

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ +  F   + + +  V+ I +     +   +  +       +E+ ++R         
Sbjct: 188 DIDSLRVFDVDSQRTLSEVDQINLLPAHEFPIDKNAIELFRSQWREQFEVR--------- 238

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             +A+ + Q+++  +           IE +          +P PTLF Y+PE++LL
Sbjct: 239 -RDAEHIYQQVSKGI-------WPAGIEYWQPLFF----SQPLPTLFSYLPENTLL 282


>gi|317495252|ref|ZP_07953622.1| primosomal protein N [Gemella moribillum M424]
 gi|316914674|gb|EFV36150.1| primosomal protein N [Gemella moribillum M424]
          Length = 721

 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 22/113 (19%)

Query: 600 EYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EYL E+   +R +  +  T  R     +++ + +  K D+L+G  ++ +GLD P   LV 
Sbjct: 552 EYLLEKIPELRIIRMDSDTTTRKGSYEKLLTNFKEHKADLLLGTQMISKGLDFPNITLVG 611

Query: 656 ILDADKEGFLRSKTS-------LIQTIGRAAR-----------NVNSKVILYA 690
           +L  D    + S  +       L+QT GRA R           N++S +I YA
Sbjct: 612 VLSIDGLMAIPSFKANEKLFQLLVQTAGRAGRSDKEGEVVFQTNISSNIIDYA 664


>gi|297161036|gb|ADI10748.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 433

 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +AA+ G R+LL + TK   + LT +L    +    +HS     +R   +   + G+  VL
Sbjct: 225 IAARDG-RVLLFLDTKHAVDQLTRHLRASGVHAAALHSGKSQPQRTRTLAQFKNGQITVL 283

Query: 637 VGINLLREGLDIPECGLVAILD 658
           V  N+   GL + +  LV  +D
Sbjct: 284 VATNVAARGLHVDDLDLVVNVD 305


>gi|282855835|ref|ZP_06265137.1| ATP-dependent DNA helicase RecG [Pyramidobacter piscolens W5455]
 gi|282586349|gb|EFB91615.1| ATP-dependent DNA helicase RecG [Pyramidobacter piscolens W5455]
          Length = 694

 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N R+  +H  +   E+  ++ +   G  D+L    ++  G+D+P   ++ + +A++ G  
Sbjct: 513 NRRLAMLHGRMGEKEKNAVMTEFSAGHIDLLASTTVIEVGVDVPNATVMVVENAERFGL- 571

Query: 666 RSKTSLIQTIGRAARN-VNSKVILYAD 691
              + L Q  GR  R    S  ILYAD
Sbjct: 572 ---SQLHQLRGRVGRGPTKSWCILYAD 595


>gi|295689317|ref|YP_003593010.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295431220|gb|ADG10392.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
           21756]
          Length = 698

 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 16/167 (9%)

Query: 558 PVEIRSART-QVEDVYDEINLAAQQGLRILLTV--------LTKRMAEDLTEYLYERNIR 608
           PV  R+A T +V ++ + +  A   G +             +  R AED    L      
Sbjct: 456 PVATRAAPTPRVPEIVERLRAAIAGGAQAFWICPLVSESEKVDLRAAEDRAADLARHLPG 515

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H ++   E+  +++    G+  VLV   ++  G+++P   ++ I  AD+ G     
Sbjct: 516 VGLVHGQMPPAEKDAVMQRFVDGEVSVLVATTVVEVGVNVPNASIMVIEHADRFGL---- 571

Query: 669 TSLIQTIGRAARNV--NSKVILYADTITKSIQLAIDETTRRREKQLE 713
             L Q  GR  R    +S V+LY   +++  Q  +D   RR +   E
Sbjct: 572 AQLHQLRGRVGRGTRESSCVLLYDPPLSEVAQKRLD-ILRRSDDGFE 617


>gi|188036020|pdb|2JGN|A Chain A, Ddx3 Helicase Domain
 gi|188036021|pdb|2JGN|B Chain B, Ddx3 Helicase Domain
 gi|188036022|pdb|2JGN|C Chain C, Ddx3 Helicase Domain
          Length = 185

 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 38  DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 96

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 97  SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 155

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 156 ---NITKDL 161


>gi|168701441|ref|ZP_02733718.1| excinuclease ABC subunit C [Gemmata obscuriglobus UQM 2246]
          Length = 448

 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 21/27 (77%)

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEI 790
           ++ + KQM  AAD LNFE+A RIRDEI
Sbjct: 225 VRRMEKQMRAAADELNFEKARRIRDEI 251


>gi|119896768|ref|YP_931981.1| ATP-dependent DNA helicase RecG [Azoarcus sp. BH72]
 gi|119669181|emb|CAL93094.1| ATP-dependent DNA helicase [Azoarcus sp. BH72]
          Length = 679

 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 8/101 (7%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L+E L E  +RV  +H  +K  E+   +     G+  VLV   ++  G+D+P   L+ I 
Sbjct: 497 LSEALPE--LRVGLVHGRLKADEKSATMAAFSAGELQVLVATTVIEVGVDVPNASLMVIE 554

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKV--ILYADTITKS 696
            A++ G       L Q  GR  R     V  +L+A  ++++
Sbjct: 555 HAERFGL----AQLHQLRGRVGRGTAESVCILLFAQPLSEN 591


>gi|73965241|ref|XP_861914.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 15 [Canis
           familiaris]
          Length = 620

 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 349 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 408

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 409 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 444


>gi|324507413|gb|ADY43143.1| ATP-dependent RNA helicase DDX17 [Ascaris suum]
          Length = 492

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++  Q   + L+ V TKR A+DLT  +         +H +    ER  ++ + + GK  +
Sbjct: 299 DIMNQPECKTLVFVETKRKADDLTRSMRRDGWPTLCIHGDKNQGERDWVLSEFKSGKTPI 358

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           L+  ++   GLD+ +   V   D     +  +    +  IGR AR
Sbjct: 359 LLATDVAARGLDVDDIKFVINYD-----YPNNSEDYVHRIGRTAR 398


>gi|325262198|ref|ZP_08128936.1| ATP-dependent RNA helicase DbpA [Clostridium sp. D5]
 gi|324033652|gb|EGB94929.1| ATP-dependent RNA helicase DbpA [Clostridium sp. D5]
          Length = 481

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+ M   L + L  R I    +H E++  ER++ +   R G F  L+  ++   G+D  +
Sbjct: 250 TREMTNVLFQKLRRRRIFCGMLHGEMEQRERLKTVDAFRRGCFRFLIATDVAARGIDFEQ 309

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
              V   D     F   K + +  IGR  RN
Sbjct: 310 ITHVVNYD-----FPSKKETYVHRIGRTGRN 335


>gi|313813576|gb|EFS51290.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL025PA1]
          Length = 749

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +HS + + E+  +I     G+  VL+   ++  G+D+P   ++ I+DAD+ G  
Sbjct: 568 GLRVEALHSRLDSSEKDLVIDRFIKGESQVLISTTVIEVGVDVPNATMMVIMDADRFGV- 626

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R 
Sbjct: 627 ---SQLHQLRGRIGRG 639


>gi|307725815|ref|YP_003909028.1| DEAD/H associated domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307586340|gb|ADN59737.1| DEAD/H associated domain protein [Burkholderia sp. CCGE1003]
          Length = 1523

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 9/132 (6%)

Query: 557 PPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYM 612
           PPV + +       E VYD +          L+ V T+RMAE    +L ER  +  V   
Sbjct: 281 PPVPLEAVMPNEVWERVYDRLAELVALHRTTLVFVNTRRMAERAARHLTERLGKEAVAAH 340

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +    R +  + L+ G+  VL+    L  G+DI +  LV      + G  R+    +
Sbjct: 341 HGSLAREHRFDAEQRLKRGELRVLIATASLELGIDIGDVDLVC-----QMGSPRAIAPFL 395

Query: 673 QTIGRAARNVNS 684
           Q +GR+  +V  
Sbjct: 396 QRVGRSGHHVGG 407


>gi|306828591|ref|ZP_07461785.1| transcription-repair coupling factor [Streptococcus mitis ATCC
           6249]
 gi|304429199|gb|EFM32285.1| transcription-repair coupling factor [Streptococcus mitis ATCC
           6249]
          Length = 1167

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           + ++H ++  ++    + D   G++D+LV   ++  G+DIP    + I +AD  G     
Sbjct: 850 IGFVHGQMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENADHMGL---- 905

Query: 669 TSLIQTIGRAARNVNSKVILYA 690
           ++L Q  GR  R   S  I YA
Sbjct: 906 STLYQLRGRVGR---SNRIAYA 924



 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP-SHLEDVA 347
            + + I+++ +G+  +Q +LL  L +  Y++      +G F + GD ++IF  S LE   
Sbjct: 133 GFKESIIRIAVGEEYDQHDLLHKLKEIGYRKVTQVQTQGEFSIRGDILDIFEMSQLE--P 190

Query: 348 WRVSMFGNDIEEISEF 363
           +R+  FG++++ I  F
Sbjct: 191 FRIEFFGDEVDGIRTF 206


>gi|282854612|ref|ZP_06263947.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           J139]
 gi|282582194|gb|EFB87576.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           J139]
 gi|314923870|gb|EFS87701.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL001PA1]
 gi|314966073|gb|EFT10172.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL082PA2]
 gi|314981845|gb|EFT25938.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL110PA3]
 gi|315090770|gb|EFT62746.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL110PA4]
 gi|315094922|gb|EFT66898.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL060PA1]
 gi|315104244|gb|EFT76220.1| putative ATP-dependent DNA helicase RecG [Propionibacterium acnes
           HL050PA2]
 gi|327328049|gb|EGE69818.1| ATP-dependent DNA helicase RecG [Propionibacterium acnes HL103PA1]
          Length = 749

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RV  +HS + + E+  ++     G+  VL+   ++  G+D+P   ++ I+DAD+ G  
Sbjct: 568 GLRVEALHSRLDSSEKDLVMDRFIKGELQVLISTTVIEVGVDVPNATMMVIMDADRFGV- 626

Query: 666 RSKTSLIQTIGRAARN 681
              + L Q  GR  R 
Sbjct: 627 ---SQLHQLRGRIGRG 639


>gi|254498765|ref|ZP_05111479.1| hypothetical protein LDG_2849 [Legionella drancourtii LLAP12]
 gi|254351997|gb|EET10818.1| hypothetical protein LDG_2849 [Legionella drancourtii LLAP12]
          Length = 1985

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 6/113 (5%)

Query: 575  INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL-GKF 633
            + LA  +G+   + V + +M+E+L  +L + NIR   +HS+    +  + +++       
Sbjct: 1283 LTLAETKGI---IYVPSIKMSENLCAHLLKANIRAYAVHSKANKKDYDKQLKEFVAHSNA 1339

Query: 634  DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             VL+ +  LR G D P+     I  A K   ++ +  + Q +GR  R   +K+
Sbjct: 1340 GVLIAVEKLRFGFDCPDLAWEII--ARKPNSMQPEQDIEQMVGRVIRKTGNKI 1390


>gi|229031485|ref|ZP_04187485.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1271]
 gi|228729774|gb|EEL80754.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1271]
          Length = 682

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 498 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 557

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 558 GL----SQLHQLRGRVGRGSEQSYCLLIAD 583


>gi|229174521|ref|ZP_04302053.1| ATP-dependent DNA helicase recG [Bacillus cereus MM3]
 gi|228609081|gb|EEK66371.1| ATP-dependent DNA helicase recG [Bacillus cereus MM3]
          Length = 682

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 498 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 557

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 558 GL----SQLHQLRGRVGRGSEQSYCLLIAD 583


>gi|225869494|ref|YP_002745441.1| transcription-repair coupling factor [Streptococcus equi subsp.
           equi 4047]
 gi|225698898|emb|CAW91884.1| putative transcription-repair coupling factor [Streptococcus equi
           subsp. equi 4047]
          Length = 1164

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 1/115 (0%)

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+++ I R+   A  S  E    +V+S       + S +++ Q  + L +G   +   +
Sbjct: 93  SSMDKTISRIEALAFLSNPEARGILVISLAGLRILLPSPKTFQQGQIDLAVGVDTDLDNV 152

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           +  LVK  Y+R    +  G F   GD ++++    +D+  R+  FG++I+ I  F
Sbjct: 153 VKKLVKIGYQRVAQVLSPGEFSRRGDILDVYEV-TQDLPVRIEFFGDEIDGIRSF 206



 Score = 37.7 bits (86), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 32/176 (18%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
           ++ LE   G+I E IIR                QV  VY++++             + K+
Sbjct: 799 TYVLENNPGLIREAIIREM----------DRGGQVFYVYNKVD------------TVDKK 836

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +AE L E + E +I   ++H ++  ++    + D   G +DVLV   ++  G+DI     
Sbjct: 837 VAE-LQELVPEASIG--FVHGQMSDIQLENTLMDFINGDYDVLVATTIIETGVDISNVNT 893

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           + I +AD  G     ++L Q  GR  R   S  I YA  + K  ++  + + +R E
Sbjct: 894 LFIENADHMGL----STLYQLRGRVGR---SNRIAYAYLMYKPDKVLTEVSEKRLE 942


>gi|170758229|ref|YP_001787810.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405218|gb|ACA53629.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 679

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y + + +  +H ++K  E+  I++D + GK   L+   ++  G+++P   L+ I +A++ 
Sbjct: 497 YFKEVEIAILHGKMKGKEKDNIMKDFKEGKIKALISTTVIEVGVNVPNATLMIIENAERF 556

Query: 663 GFLRSKTSLIQTIGRAAR 680
           G       L Q  GR  R
Sbjct: 557 GL----AQLHQLRGRVGR 570


>gi|109114658|ref|XP_001112113.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like [Macaca
           mulatta]
          Length = 599

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +   A++L   L    I V  +H+E    +R   +   R G+  VL+   LL  
Sbjct: 415 VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGRIWVLICTALLAR 474

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           G+D     LV   D     F  S    I  IGR  R  N
Sbjct: 475 GIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGN 508


>gi|88802812|ref|ZP_01118339.1| putative RNA binding protein with S1 RNA-binding domain
           [Polaribacter irgensii 23-P]
 gi|88781670|gb|EAR12848.1| putative RNA binding protein with S1 RNA-binding domain
           [Polaribacter irgensii 23-P]
          Length = 684

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
           IP    +AIL A+KEGF+R K ++ +    A + + +++I   +T T  IQLAI ++ +R
Sbjct: 192 IPSHRFLAILRAEKEGFVRVKITIDEN--DAIQKIENRIIRSQNTCTPQIQLAIQDSYKR 249


>gi|159903626|ref|YP_001550970.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888802|gb|ABX09016.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9211]
          Length = 604

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 6/98 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK +   L+E L   N  V  ++ +V    R   I  LR G  D+LV  ++   
Sbjct: 294 VIIFARTKAITLRLSESLEALNHNVAVLNGDVPQTLRERTIERLRQGGIDILVATDVAAR 353

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
           GLD+   GLV   D   D E ++      I   GRA R
Sbjct: 354 GLDVERIGLVINYDMPFDSEAYVHR----IGRTGRAGR 387


>gi|71650107|ref|XP_813758.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70878673|gb|EAN91907.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 630

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 12/142 (8%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   Q   IL+ V  KR A+ L  +L    +    +H +    ER E ++  +     VL
Sbjct: 379 LHENQNQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMFKSASCQVL 438

Query: 637 VGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK------- 685
           V  ++   GLDIP+  +V   D  ++ + ++    +T     +GRA    N K       
Sbjct: 439 VATDVASRGLDIPDVSIVIQYDMPSNIDDYVHRIGRTGRAGKVGRAISFFNEKNRNIVDD 498

Query: 686 -VILYADTITKSIQLAIDETTR 706
            V L  +T    +Q  +D T R
Sbjct: 499 LVPLLNETHQNVLQQIMDLTKR 520


>gi|331701488|ref|YP_004398447.1| ATP-dependent DNA helicase RecG [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128831|gb|AEB73384.1| ATP-dependent DNA helicase RecG [Lactobacillus buchneri NRRL
           B-30929]
          Length = 676

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           ++E    V  +H  +   E+   + D +  +F VLV   ++  G+D+     + I DAD 
Sbjct: 494 IFEPQYSVGLLHGRMSDEEKDTAMADFKNNQFQVLVATTVIEVGVDVTNANTMLIFDADH 553

Query: 662 EGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691
            G       L Q  GR  R +  S  IL AD
Sbjct: 554 FGL----AQLHQLRGRVGRGDTQSYCILIAD 580


>gi|320451062|ref|YP_004203158.1| DEAD-box ATP-dependent RNA helicase [Thermus scotoductus SA-01]
 gi|320151231|gb|ADW22609.1| DEAD-box ATP-dependent RNA helicase [Thermus scotoductus SA-01]
          Length = 521

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 6/134 (4%)

Query: 525 TIVVSATPGSWELEQCQ----GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           T++ SAT  SW  +  +      +V  ++R  G+      I +   ++  + D + + A 
Sbjct: 178 TLLFSATLPSWARKLAERYMKSPVVINVVREEGITYQEEAIPAPGDRLSLLSDVLFVKAP 237

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +  R ++   TK   E++   L       R +H ++   +R  ++R  R G+  VLV  +
Sbjct: 238 K--RAIVFTRTKAETEEVATGLLRLGHPARAIHGDLSQTDRERVMRAFREGEVRVLVATD 295

Query: 641 LLREGLDIPECGLV 654
           +   GLDIPE  LV
Sbjct: 296 VAARGLDIPEVDLV 309


>gi|317969805|ref|ZP_07971195.1| ATP-dependent DNA helicase RecG [Synechococcus sp. CB0205]
          Length = 811

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 590 LTKRMAEDLTEYLYER---NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L  R A D+ + L E+   N++V  +H  + + ++   I     G+  VLV   ++  G+
Sbjct: 611 LDLRSAVDVHQQLSEQVFPNLQVGLLHGRMPSADKQAAITAFASGETQVLVSTTVVEVGV 670

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           D+PE  ++ I  AD+ G       L Q  GR  R   +   L  +
Sbjct: 671 DVPEASVMVIDHADRFGL----AQLHQLRGRVGRGAAASYCLLVN 711


>gi|316972366|gb|EFV56044.1| fanconi anemia group M protein [Trichinella spiralis]
          Length = 1800

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +++E++++ + G ++ LV   +  EGLDI E  L+   D+       S   L+Q +GR A
Sbjct: 580 KQLEVVKEFQRGCYNTLVSTCVGEEGLDIGEVDLIVCYDSPT-----SPIRLVQRMGRTA 634

Query: 680 RNVNSKVIL 688
           R    ++++
Sbjct: 635 RKREGEILI 643


>gi|225867624|ref|YP_002743572.1| transcription-repair coupling factor [Streptococcus equi subsp.
           zooepidemicus]
 gi|225700900|emb|CAW97563.1| putative transcription-repair coupling factor [Streptococcus equi
           subsp. zooepidemicus]
          Length = 1164

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 1/115 (0%)

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+++ I R+   A  S  E    +V+S       + S +++ Q  + L +G   +   +
Sbjct: 93  SSMDKTISRIEALAFLSNPEARGILVISLAGLRILLPSPKTFQQGQIDLAVGVDTDLDNV 152

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           +  LVK  Y+R    +  G F   GD ++++    +D+  R+  FG++I+ I  F
Sbjct: 153 VKKLVKIGYQRVAQVLSPGEFSRRGDILDVYEV-TQDLPVRIEFFGDEIDGIRSF 206



 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 32/176 (18%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
           ++ LE   G+I E IIR                QV  VY++++             + K+
Sbjct: 799 TYVLENNPGLIREAIIREM----------DRGGQVFYVYNKVD------------TIDKK 836

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +AE L E + E +I   ++H ++  ++    + D   G +DVLV   ++  G+DI     
Sbjct: 837 VAE-LQELVPEASIG--FVHGQMSDIQLENTLMDFINGDYDVLVATTIIETGVDISNVNT 893

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           + I +AD  G     ++L Q  GR  R   S  I YA  + K  ++  + + +R E
Sbjct: 894 LFIENADHMGL----STLYQLRGRVGR---SNRIAYAYLMYKPDKVLTEVSEKRLE 942


>gi|254173751|ref|ZP_04880423.1| Type III restriction enzyme, res subunit family [Thermococcus sp.
           AM4]
 gi|214032443|gb|EEB73273.1| Type III restriction enzyme, res subunit family [Thermococcus sp.
           AM4]
          Length = 807

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 7/93 (7%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           E+ E++     G+F+VLV  ++  EGLD+PE  LV   +      + S    IQ  GR  
Sbjct: 418 EQKEVLDRFSRGEFNVLVATSVGEEGLDVPEVDLVVFYEP-----VPSAIRSIQRRGRTG 472

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           R+   KV++     T+    A   ++RR+EK +
Sbjct: 473 RHRPGKVVILMAKGTRD--EAYYWSSRRKEKGM 503


>gi|217967893|ref|YP_002353399.1| transcription-repair coupling factor [Dictyoglomus turgidum DSM
           6724]
 gi|217336992|gb|ACK42785.1| transcription-repair coupling factor [Dictyoglomus turgidum DSM
           6724]
          Length = 1059

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 254 QIDRMRHSATRSLL-ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           QI   R  A  +++ ++N  I+ S  S IY I   +   + I++++IG+ + ++++   L
Sbjct: 92  QIQGKRLRAISNIIYDKNFSIIASLKSLIYPIIPKDVLKERIIKIRIGEEIAREKIEKYL 151

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
            +  Y+R       G + + G  ++IF    E+   R+  FG++I  I  F+ L  +  R
Sbjct: 152 AENFYQRLPQVEKIGDYSIRGGILDIFSPIYEN-PIRIEFFGDEITSIR-FFNLEDK--R 207

Query: 373 NVETIKIYANSHYVTP 388
           ++ET K      ++TP
Sbjct: 208 SIETTK----EVFITP 219


>gi|149182343|ref|ZP_01860821.1| primosome assembly protein PriA [Bacillus sp. SG-1]
 gi|148849962|gb|EDL64134.1| primosome assembly protein PriA [Bacillus sp. SG-1]
          Length = 805

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 15/102 (14%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERI----EIIRDLRLGKFDVLVGINLLREGL 646
           T+++ E+LT+ L E     R +  +V T  R      ++     G  D+L+G  ++ +GL
Sbjct: 565 TQKVEEELTKLLPE----ARVIRMDVDTTSRKGAHERLLDSFGEGHADILLGTQMIAKGL 620

Query: 647 DIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           D P   LV +L AD    L       ++   L Q  GRA R+
Sbjct: 621 DFPNITLVGVLSADTMLHLPDFRSAEKTFQLLTQVSGRAGRH 662


>gi|148272534|ref|YP_001222095.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830464|emb|CAN01399.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 727

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           ++R   +H  +   E+  ++R    G  D++V   ++  G+D+P    + ILDAD+ G
Sbjct: 543 SVRRAVLHGRMSGEEKDRVMRAFSAGDIDLIVATTVIEVGVDVPNASTMVILDADRFG 600


>gi|73965239|ref|XP_861886.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 14 [Canis
           familiaris]
          Length = 588

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 317 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 376

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 377 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 412


>gi|72382486|ref|YP_291841.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Prochlorococcus marinus str. NATL2A]
 gi|72002336|gb|AAZ58138.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str.
           NATL2A]
          Length = 589

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           +T  +AE L  Y Y     V  ++ ++   +R   +  LR G  ++LV  ++   GLD+ 
Sbjct: 287 ITIVVAEKLESYGYN----VAVLNGDIPQNQRERTVERLRQGSINILVATDVAARGLDVD 342

Query: 650 ECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             GLV   D   D+E ++      I   GRA R  N + IL+ +   +S 
Sbjct: 343 RIGLVINYDMPFDREAYVHR----IGRTGRAGR--NGEAILFVNPRERSF 386


>gi|74149390|dbj|BAE22450.1| unnamed protein product [Mus musculus]
          Length = 615

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 402

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 403 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 438


>gi|70954247|ref|XP_746179.1| ATP-dependent DNA helicase [Plasmodium chabaudi chabaudi]
 gi|56526711|emb|CAH78235.1| ATP-dependent DNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 1089

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 5/96 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V +K+  E++  +L+ER + V+  H+++   E+ E        +  +++       G
Sbjct: 264 LIYVNSKKDCENIYNFLHERGLLVKMYHADLSNEEKREAHEMFLKDEIQIVIATVAFGMG 323

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           +D P+   +        GF RS  + +Q +GRA R+
Sbjct: 324 IDKPDIRRII-----HYGFSRSLEAYVQQVGRAGRD 354


>gi|67617125|ref|XP_667529.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 24 [Cryptosporidium
           hominis TU502]
 gi|54658672|gb|EAL37298.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 24 [Cryptosporidium
           hominis]
          Length = 837

 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           E+++++  +H  +   +RI+ I   +     +L+  ++L  GLDIPE  +V  L A    
Sbjct: 642 EKSLKIIGIHGNLSQKQRIQAIESFKSSNSAILICTDVLARGLDIPEVDVVVHLQAP--- 698

Query: 664 FLRSKTSLIQTIGRAAR 680
             R+ + +I   GR AR
Sbjct: 699 --RNISLMIHRSGRTAR 713


>gi|332980807|ref|YP_004462248.1| type III restriction protein res subunit [Mahella australiensis
           50-1 BON]
 gi|332698485|gb|AEE95426.1| type III restriction protein res subunit [Mahella australiensis
           50-1 BON]
          Length = 864

 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER E ++ L+  +  V+  +++  EGLD+PE  +V  L   +     S T  +Q +GR
Sbjct: 513 VVERNEAVKRLKTAEIKVIFSVDIFNEGLDVPEVDMVMFLRPTE-----SPTIFLQQLGR 567

Query: 678 AARNVNSK 685
             R    K
Sbjct: 568 GLRKKGEK 575


>gi|289825492|ref|ZP_06544699.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 415

 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +VLV  ++  
Sbjct: 250 RSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DIP+   V   D       RS  + +  IGR  R
Sbjct: 310 RGIDIPDVSHVINFD-----MPRSGDTYLHRIGRTGR 341


>gi|221307593|ref|NP_001138306.1| probable ATP-dependent RNA helicase DDX5 [Pan troglodytes]
 gi|156630859|sp|A5A6J2|DDX5_PANTR RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|146741418|dbj|BAF62365.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Pan troglodytes verus]
          Length = 614

 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 402

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 403 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 438


>gi|123479212|ref|XP_001322765.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121905617|gb|EAY10542.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 536

 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 7/107 (6%)

Query: 577 LAAQQGLRILLTVLT--KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           L + +G++  + V T  +   E     +     R  ++H      ER  I+  ++   FD
Sbjct: 379 LKSLRGMKAPIIVFTNTRDSCEKSAMEIQNNGFRSAFIHGGKSQKERDSIVEGIQNNLFD 438

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           VLV  +++  G+DIP    V  L+       R+  + +  IGR  RN
Sbjct: 439 VLVATDVISRGIDIPNVENVVNLE-----LPRNIHTYVHRIGRTGRN 480


>gi|89068292|ref|ZP_01155702.1| transcription-repair coupling factor [Oceanicola granulosus
           HTCC2516]
 gi|89046209|gb|EAR52267.1| transcription-repair coupling factor [Oceanicola granulosus
           HTCC2516]
          Length = 1151

 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           GKFDVL+   ++  GLDIP    + +  AD  G     + L Q  GR  R   SK   YA
Sbjct: 860 GKFDVLLATTIVESGLDIPTANTMIVWRADMYGL----SQLYQIRGRVGR---SKTRAYA 912

Query: 691 DTITKSIQLAIDETTRR 707
              TK      D+  +R
Sbjct: 913 YMTTKPRARLTDQAEKR 929


>gi|77414524|ref|ZP_00790670.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae 515]
 gi|77159422|gb|EAO70587.1| ATP-dependent DNA helicase RecG [Streptococcus agalactiae 515]
          Length = 671

 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L+ Y +E   +V  +H  +K  E+  I++  +  K  +LV   ++  G+++P   ++ I
Sbjct: 487 ELSTY-FEGIAKVALVHGRMKNDEKDAIMQXFKDKKSHILVSTTVIEVGVNVPNATIMII 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           +DAD+ G     + L Q  GR  R    S  +L A+  T S
Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGYKQSYAVLVANPKTDS 582


>gi|330443852|ref|YP_004376838.1| primosomal protein N' [Chlamydophila pecorum E58]
 gi|328806962|gb|AEB41135.1| primosomal protein N' [Chlamydophila pecorum E58]
          Length = 747

 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 7/87 (8%)

Query: 136 KDITFFQMQTD-YHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVI---E 190
           KD+ FF  +    HP  +Q  A++++   I  SR    LL G+TGSGKT    + I    
Sbjct: 198 KDLFFFPPEPKPLHP--EQQDALSKITSSIKTSRFCTHLLYGITGSGKTEVYIRAIREAR 255

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFF 217
           A+ + AI++ P   L  Q  + FK  F
Sbjct: 256 ALGKSAILLVPEISLTIQTETLFKALF 282


>gi|326795184|ref|YP_004313004.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326545948|gb|ADZ91168.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 619

 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 11/155 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK    +L E L  R      ++ ++    R   +  ++ G+ D+LV  +++  
Sbjct: 250 MIIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDILVATDVVAR 309

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  +   IL+     + +   I+
Sbjct: 310 GLDVDRVSHVVNYDIPYDTESYVHR----IGRTGRAGR--SGTAILFVGHRERRMLQQIE 363

Query: 703 ETTRRREKQLEHNKKHNINPQSV---KEKIMEVID 734
             TR+  ++++     +IN Q V   K++I + ID
Sbjct: 364 RATRQAIERMQLPTASDINEQRVARFKQRITDTID 398


>gi|282859402|ref|ZP_06268508.1| primosomal protein N' [Prevotella bivia JCVIHMP010]
 gi|282587800|gb|EFB92999.1| primosomal protein N' [Prevotella bivia JCVIHMP010]
          Length = 765

 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 17/112 (15%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           II +   GK ++L+G  ++ +GLD  +  +V ILDAD          + ++   + Q  G
Sbjct: 560 IINEFSEGKTNLLIGTQMITKGLDFDKVSVVGILDADSMLNYPDFRAYEQAFMMMCQVSG 619

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           RA R     +++     TK+ +L I +       Q+ HN   N     ++E+
Sbjct: 620 RAGRKGKQGLVILQ---TKNQELPIIQ-------QVVHNDYQNFYRNVLEER 661


>gi|138894706|ref|YP_001125159.1| ATP-dependent DNA helicase RecG [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266219|gb|ABO66414.1| ATP-dependent DNA helicase RecG [Geobacillus thermodenitrificans
           NG80-2]
          Length = 678

 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           Y Y     V  MH  +   E+  ++R     +  VLV   ++  G+++P   ++ I DA+
Sbjct: 492 YYYRGKYEVGLMHGRLSADEKEAVMRAFSENRIHVLVSTTVVEVGVNVPNATVMVIYDAE 551

Query: 661 KEGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691
           + G       L Q  GR  R +  S  IL AD
Sbjct: 552 RFGL----AQLHQLRGRVGRGDAQSYCILIAD 579


>gi|118619716|ref|YP_908048.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
           ulcerans Agy99]
 gi|118571826|gb|ABL06577.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
           ulcerans Agy99]
          Length = 1222

 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 1/109 (0%)

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +VV++V  +    + +   Q  V L +G  +   E+++ LV+  Y R D+   RG F V 
Sbjct: 132 VVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVR 191

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           G  +++F    E    RV  +G++I E+  F     + I  +E   + A
Sbjct: 192 GGILDLFAPTAEHPV-RVEFWGDEITEMRMFSVADQRSIPEIEVSTLVA 239


>gi|194468331|ref|ZP_03074317.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
 gi|194453184|gb|EDX42082.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
          Length = 457

 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK  A +LT+YL  + ++V  +H  ++   R   +R +R  ++  +V  +L   G+DI  
Sbjct: 254 TKERAVELTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQYVVATDLAARGIDIDG 313

Query: 651 CGLVA--ILDADKEGFLRSKTSLIQTIGRAARN 681
             LV    L  D E F       +  +GR  RN
Sbjct: 314 VSLVINDDLPTDLEYF-------VHRVGRTGRN 339


>gi|67458770|ref|YP_246394.1| ATP-dependent DNA helicase RecG [Rickettsia felis URRWXCal2]
 gi|67004303|gb|AAY61229.1| ATP-dependent DNA helicase RecG [Rickettsia felis URRWXCal2]
          Length = 707

 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H ++K  ++ +I++  + G+  +LV   ++  G+D+PE  L+ I +A++ G     
Sbjct: 534 VGIIHGKMKNEQKDQIMKQFKEGEIKILVATTVIEVGIDVPEATLIVIENAEQFGL---- 589

Query: 669 TSLIQTIGRAARN 681
             L Q  GR  R 
Sbjct: 590 AQLHQLRGRVGRG 602


>gi|42782947|ref|NP_980194.1| ATP-dependent DNA helicase RecG [Bacillus cereus ATCC 10987]
 gi|42738874|gb|AAS42802.1| ATP-dependent DNA helicase RecG [Bacillus cereus ATCC 10987]
          Length = 682

 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 498 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 557

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 558 GL----SQLHQLRGRVGRGSEQSYCLLIAD 583


>gi|16801651|ref|NP_471919.1| hypothetical protein lin2589 [Listeria innocua Clip11262]
 gi|16415126|emb|CAC97816.1| lin2589 [Listeria innocua Clip11262]
          Length = 418

 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 11/126 (8%)

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +II+  R G+  VL  ++L+ EG D+P+C  V +L   +     S +  IQ   R  R
Sbjct: 231 RDDIIQRFREGEIKVLCNLDLIGEGFDVPDCSTVIMLRPTQ-----SLSLYIQQSMRGMR 285

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
               K  +  D +    +  + +  R+    LE  K  N N      KI     P     
Sbjct: 286 YRTGKTAIIIDHVGNVNRFGLPDMERKW--SLEAKKGSNSNKAEAPVKIC----PDCFMT 339

Query: 741 AATTNI 746
             +TNI
Sbjct: 340 VLSTNI 345


>gi|71421857|ref|XP_811932.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70876653|gb|EAN90081.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 631

 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 12/142 (8%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   Q   IL+ V  KR A+ L  +L    +    +H +    ER E ++  +     VL
Sbjct: 380 LHENQNQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMFKSASCQVL 439

Query: 637 VGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK------- 685
           V  ++   GLDIP+  +V   D  ++ + ++    +T     +GRA    N K       
Sbjct: 440 VATDVASRGLDIPDVSIVIQYDMPSNIDDYVHRIGRTGRAGKVGRAISFFNEKNRNIVDD 499

Query: 686 -VILYADTITKSIQLAIDETTR 706
            V L  +T    +Q  +D T R
Sbjct: 500 LVPLLNETHQNVLQQIMDLTKR 521


>gi|254585603|ref|XP_002498369.1| ZYRO0G08580p [Zygosaccharomyces rouxii]
 gi|238941263|emb|CAR29436.1| ZYRO0G08580p [Zygosaccharomyces rouxii]
          Length = 539

 Score = 38.1 bits (87), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            A++  ++L+  L K+ A  +   L      V  +H ++   +R   + D + GK ++L+
Sbjct: 371 GAKKDDKVLIFALYKKEASRVENNLKYNGYDVAAIHGDLSQQQRTSALNDFKAGKSNLLL 430

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             ++   GLDIP    V  L      F  +    +  IGR  R
Sbjct: 431 ATDVAARGLDIPNVKTVINLT-----FPLTVEDYVHRIGRTGR 468


>gi|197692465|dbj|BAG70196.1| ATP-dependent RNA helicase DDX5 [Homo sapiens]
          Length = 614

 Score = 38.1 bits (87), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 402

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 403 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 438


>gi|167957261|ref|ZP_02544335.1| excinuclease ABC subunit B [candidate division TM7 single-cell
           isolate TM7c]
          Length = 35

 Score = 38.1 bits (87), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 22/29 (75%)

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           QIIRPTGL+DP ++IR    QV+D+  EI
Sbjct: 4   QIIRPTGLLDPEIDIRPTEGQVDDLIKEI 32


>gi|148380449|ref|YP_001254990.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A str. ATCC
           3502]
 gi|153931726|ref|YP_001384672.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A str. ATCC
           19397]
 gi|153935165|ref|YP_001388193.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A str. Hall]
 gi|148289933|emb|CAL84046.1| putative ATP-dependent DNA helicase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152927770|gb|ABS33270.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A str. ATCC
           19397]
 gi|152931079|gb|ABS36578.1| ATP-dependent DNA helicase RecG [Clostridium botulinum A str. Hall]
          Length = 679

 Score = 38.1 bits (87), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y + + +  +H ++K  E+  I++D + GK   L+   ++  G+++P   L+ I +A++ 
Sbjct: 497 YFKEVEIAILHGKMKGKEKDTIMKDFKDGKIKALISTTVIEVGVNVPNATLMVIENAERF 556

Query: 663 GFLRSKTSLIQTIGRAAR 680
           G       L Q  GR  R
Sbjct: 557 GL----AQLHQLRGRVGR 570


>gi|118092589|ref|XP_421574.2| PREDICTED: similar to Gu protein [Gallus gallus]
          Length = 690

 Score = 38.1 bits (87), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 15/144 (10%)

Query: 523 PTTIVVSATPGSW-----------ELEQCQGIIVEQIIRPTGLVDP-PVEIRSARTQVED 570
           P T++ SAT   W           E EQ   +I ++  R    V+   ++ RS++ + E 
Sbjct: 308 PQTLLFSATCPRWVYDVAKKYMKGEYEQVD-LIGKKTQRTATTVEHLAIQCRSSQ-RAEV 365

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D I + +    R ++   TK+ A +L      +    + +H ++   +R   ++  R 
Sbjct: 366 LGDIIQVYSGSHGRTIVFCETKKEANELALNSALKQ-EAQSLHGDIPQKQREVTLKGFRN 424

Query: 631 GKFDVLVGINLLREGLDIPECGLV 654
           G F+VL+  N+   GLDIPE  LV
Sbjct: 425 GVFEVLIATNVAARGLDIPEVDLV 448


>gi|75076425|sp|Q4R6M5|DDX5_MACFA RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|67969804|dbj|BAE01250.1| unnamed protein product [Macaca fascicularis]
          Length = 614

 Score = 38.1 bits (87), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVAS 402

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 403 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 438


>gi|329766732|ref|ZP_08258275.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329136987|gb|EGG41280.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 711

 Score = 38.1 bits (87), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 24/174 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-----QIIRPTGLVDPPVEIRSARTQVEDVYD----- 573
           T I +SAT G+  +E+    +V      QIIR T +    VE++     + DV +     
Sbjct: 190 TKIGLSATVGN--IEEAGKFVVGTKRKCQIIRDTSIRKYDVEVKFVPGTISDVAEKIIEY 247

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDLTEYLYERN-IRVRYMHSEVKTLERIEIIRDLRL 630
             E+NL +     +LL   T+  AE L   L E++ I +   H  +    R +    LR 
Sbjct: 248 VLELNLDSP----VLLFTNTRGEAEFLASMLKEKSTISIELHHGSLSKEVREDTELSLRE 303

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           G   ++V  + L  GLDI    LV        G  R  + L+Q IGR+  N N+
Sbjct: 304 GTRGIVVCTSSLELGLDIGAIELVI-----HYGSPRQVSKLVQRIGRSRHNRNA 352


>gi|328697427|ref|XP_001946984.2| PREDICTED: ATP-dependent RNA helicase p62-like isoform 1
           [Acyrthosiphon pisum]
          Length = 551

 Score = 38.1 bits (87), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  + +T  +     R   +H +    ER  +++  R G+ ++LV  ++   GLD+ +
Sbjct: 393 TKRKVDTITRKITNMGARAVGIHGDKSQSERDHVLKQFRGGRANILVATDVAARGLDVDD 452

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
              V   D     +  +    I  IGR  R+
Sbjct: 453 VKFVINFD-----YPNNSEDYIHRIGRTGRS 478


>gi|271961946|ref|YP_003336142.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
 gi|270505121|gb|ACZ83399.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
          Length = 561

 Score = 38.1 bits (87), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 4/118 (3%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T+   + LTE L  R  R   +H  +   +R  ++  LR G  D+LV  ++   GLDI +
Sbjct: 262 TRDEVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRLRTGTADLLVATDVAARGLDIEQ 321

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
             L  +++ D      S    I  +GRA R      I  A+     +   I+  T+RR
Sbjct: 322 --LTHVVNYDVPSAPESYVHRIGRVGRAGR--EGVAITLAEPREHRMLKTIERVTKRR 375


>gi|227544205|ref|ZP_03974254.1| ATP-dependent RNA helicase [Lactobacillus reuteri CF48-3A]
 gi|300908200|ref|ZP_07125666.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           reuteri SD2112]
 gi|227185841|gb|EEI65912.1| ATP-dependent RNA helicase [Lactobacillus reuteri CF48-3A]
 gi|300894627|gb|EFK87983.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           reuteri SD2112]
          Length = 467

 Score = 38.1 bits (87), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK  A +LT+YL  + ++V  +H  ++   R   +R +R  ++  +V  +L   G+DI  
Sbjct: 264 TKERAVELTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQYVVATDLAARGIDIDG 323

Query: 651 CGLVA--ILDADKEGFLRSKTSLIQTIGRAARN 681
             LV    L  D E F       +  +GR  RN
Sbjct: 324 VSLVINDDLPTDLEYF-------VHRVGRTGRN 349


>gi|76789520|ref|YP_328606.1| primosome assembly protein PriA [Chlamydia trachomatis A/HAR-13]
 gi|237803208|ref|YP_002888402.1| primosome assembly protein PriA [Chlamydia trachomatis B/Jali20/OT]
 gi|237805129|ref|YP_002889283.1| primosome assembly protein PriA [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311612|ref|ZP_05354182.1| primosome assembly protein PriA [Chlamydia trachomatis 6276]
 gi|255317913|ref|ZP_05359159.1| primosome assembly protein PriA [Chlamydia trachomatis 6276s]
 gi|255507393|ref|ZP_05383032.1| primosome assembly protein PriA [Chlamydia trachomatis D(s)2923]
 gi|76168050|gb|AAX51058.1| primosomal protein N' [Chlamydia trachomatis A/HAR-13]
 gi|231273429|emb|CAX10344.1| primosomal protein N' [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274442|emb|CAX11237.1| primosomal protein N' [Chlamydia trachomatis B/Jali20/OT]
 gi|289525822|emb|CBJ15303.1| primosomal protein N' [Chlamydia trachomatis Sweden2]
 gi|296435401|gb|ADH17579.1| primosome assembly protein PriA [Chlamydia trachomatis E/150]
 gi|296436327|gb|ADH18501.1| primosome assembly protein PriA [Chlamydia trachomatis G/9768]
 gi|296437257|gb|ADH19427.1| primosome assembly protein PriA [Chlamydia trachomatis G/11222]
 gi|296438186|gb|ADH20347.1| primosome assembly protein PriA [Chlamydia trachomatis G/11074]
 gi|296439118|gb|ADH21271.1| primosome assembly protein PriA [Chlamydia trachomatis E/11023]
 gi|297140687|gb|ADH97445.1| primosome assembly protein PriA [Chlamydia trachomatis G/9301]
          Length = 753

 Score = 38.1 bits (87), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 36/159 (22%)

Query: 172 LLLGVTGSGKTFTMAKVI---EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           LL GVTGSGKT    +VI    A+ +  I++ P   L  Q  S FK    H   E  V +
Sbjct: 238 LLFGVTGSGKTEVYLQVIRKARALGKSVILLVPEVALTIQTLSFFKM---HFGSEVGVLH 294

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           Y     E    RT T+               H A+R L+     I++   S I+    ++
Sbjct: 295 YKLSDSE----RTQTW---------------HKASRGLIN----IIIGPRSAIF--CPIQ 329

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
           +   +IV  +   + +Q +L        Y+ +D+ ++RG
Sbjct: 330 NLGLIIVDEEHDSAYKQSDL-----PPFYQARDVAVMRG 363


>gi|22298277|ref|NP_681524.1| DNA recombinase [Thermosynechococcus elongatus BP-1]
 gi|22294456|dbj|BAC08286.1| DNA recombinase [Thermosynechococcus elongatus BP-1]
          Length = 804

 Score = 38.1 bits (87), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N RV  +H  + + E+   I+    G+ D+LV   ++  G+D+P   ++ I  A++ G  
Sbjct: 623 NFRVGLLHGRMASSEKDATIQAFAQGELDILVATTVVEVGVDVPNATVMLIEHAERFGL- 681

Query: 666 RSKTSLIQTIGRAARNVNSKVIL 688
              + L Q  GR  R       L
Sbjct: 682 ---SQLHQLRGRVGRGAQQSYCL 701


>gi|327483588|gb|AEA77995.1| Helicase [Vibrio cholerae LMA3894-4]
          Length = 584

 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 18/123 (14%)

Query: 572 YDEINLAAQQ------GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +D+I L+ Q+       ++ L   ++K  A+ +T+ L  + I+   + S+  + +R +  
Sbjct: 279 FDKILLSMQEIITDISKMKALAFCVSKEHAQYMTQQLLLKGIKADVLTSD-NSHDRQQKQ 337

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR---SKTSLIQTIGRAARNV 682
           + +R G  +VL  +++  EG+DIPE         D   FLR   S T  +Q +GR  R  
Sbjct: 338 QAIRSGSINVLCVVDIFNEGVDIPE--------VDTLLFLRPTESLTIFLQQLGRGLRLA 389

Query: 683 NSK 685
             K
Sbjct: 390 EGK 392


>gi|296201830|ref|XP_002748194.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 1
           [Callithrix jacchus]
          Length = 614

 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 402

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 403 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 438


>gi|291406391|ref|XP_002719530.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 3
           [Oryctolagus cuniculus]
          Length = 614

 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 402

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 403 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 438


>gi|237785892|ref|YP_002906597.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758804|gb|ACR18054.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 823

 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 6/106 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK+  E+L E L  R      ++ ++   +R   +  LR G+ D+LV  ++   
Sbjct: 396 MIMFARTKQNTEELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAAR 455

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILY 689
           GLD+     V   D           S +  IGR  R   S + IL+
Sbjct: 456 GLDVERISHVVNYD-----IPHDTESYVHRIGRTGRAGRSGEAILF 496


>gi|288572872|ref|ZP_06391229.1| ATP-dependent DNA helicase RecG [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288568613|gb|EFC90170.1| ATP-dependent DNA helicase RecG [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 687

 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 20/173 (11%)

Query: 523 PTTIVVSATPGSWELE-QCQGIIVEQIIR--PTGLVDPPVEIRS-ARTQVEDVYDEINLA 578
           P  +V++ATP    L     G +   +IR  P G +  PV+ R     +V+D+Y  ++  
Sbjct: 411 PHVLVMTATPIPRTLALSVYGDLSVSVIRTMPEGRI--PVKTRWIGDHKVDDLYGFLDSE 468

Query: 579 AQQGLRILLTV--------LTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDL 628
             +G RI            L  R  E+  ++L  R  + RV  +H  +   ER  ++ + 
Sbjct: 469 MDRGRRIFWVCPLIEESEHLNARPLEERFDFLVRRFGSERVSMLHGRMSMEERRSVMEEF 528

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             G+  +L    ++  G+D+PE  ++ I  A++ G     + L Q  GR  R+
Sbjct: 529 ASGESPLLASTTVIEVGVDVPEATVMVIEGAERFGL----SQLHQLRGRVGRS 577


>gi|255553305|ref|XP_002517695.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223543327|gb|EEF44859.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 585

 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 11/145 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   +K   + + EYL  + + V  +H      ER   I   + GK DVL+  +++ 
Sbjct: 392 QVLIFCESKADVDKIHEYLLLKGVEVVAIHGGKDQEEREYAISSFKSGKKDVLIATDVVS 451

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
           +GLD P+   V   D   E       + +  IGR  R   + +   A T     Q    E
Sbjct: 452 KGLDFPDIQHVINYDMPAE-----IENYVHRIGRTGRCGKTGI---ATTFINKNQ---SE 500

Query: 704 TTRRREKQLEHNKKHNINPQSVKEK 728
           TT    K L    K  I P  V+ K
Sbjct: 501 TTLLDLKHLLQEAKQKIPPVLVEVK 525


>gi|242007312|ref|XP_002424485.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212507903|gb|EEB11747.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 669

 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK  A  L   L   N++   +H  ++  ER++ ++  + G+ D+LV  ++   G
Sbjct: 405 IIFVATKSQAHKLRILLGFLNMKAGELHGNLRQPERLDTLKRFKNGELDILVATDVAARG 464

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDI   G+  +++ D      +    I  +GR AR
Sbjct: 465 LDI--SGVKTVINYD---LPMTFEHYIHRVGRTAR 494


>gi|188585958|ref|YP_001917503.1| primosomal protein N' [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350645|gb|ACB84915.1| primosomal protein N' [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 749

 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 17/107 (15%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF-----DVLVGINLLREG 645
           T+++  +L +YL +    ++ +  +V T  +    ++L LGKF     +VL+G  ++ +G
Sbjct: 507 TQKIERELKKYLPD----LKTIRMDVDTTRKKNSHQEL-LGKFKNKQANVLIGTQMIAKG 561

Query: 646 LDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARNVNSK 685
           LD P+  LV I+ AD    L       ++   L Q  GRA R  N++
Sbjct: 562 LDFPDVSLVGIITADTALNLPDFRAGEKTFQLLTQVAGRAGRRDNNQ 608


>gi|124481673|gb|AAI33163.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
          Length = 709

 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R G+
Sbjct: 481 DLLNATGKDSL-TLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGR 539

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
             ++V   +   GLDI     V   D  +D E ++    +T  +  +G A    N K
Sbjct: 540 CPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDK 596


>gi|121714731|ref|XP_001274976.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1]
 gi|158706439|sp|A1C9M6|DCL2_ASPCL RecName: Full=Dicer-like protein 2; Includes: RecName:
           Full=Endoribonuclease dcl2; Includes: RecName:
           Full=ATP-dependent helicase dcl2
 gi|119403130|gb|EAW13550.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1]
          Length = 1389

 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 19/143 (13%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH ++ TL+      D R G  ++++  ++L EG+DI  C +V     DK   L+   S 
Sbjct: 437 MHGQLSTLD------DFRSGHKNLIIATDVLEEGIDISACSVVVCY--DKPPNLK---SF 485

Query: 672 IQTIGRAARNVNSKVILY-----ADTITK--SIQLAIDETTRRREKQLEHN-KKHNINPQ 723
           +Q  GRA +  ++  I++     A  + K  +++ A+ E  +  E+ L+   +   +N +
Sbjct: 486 VQRRGRARQKQSTYAIMFPAEDSAFDLAKWQTLEQAMIEAYQDDERHLQSAIELERVNEE 545

Query: 724 SVKEKIMEVIDPILLEDAATTNI 746
            V+   +E    +L  D A  ++
Sbjct: 546 VVERFTVESTSAVLTADTAMAHL 568


>gi|68536452|ref|YP_251157.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
 gi|68264051|emb|CAI37539.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
          Length = 713

 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 4/129 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R      ++ ++    R   +  L+ G+ D+LV  ++   
Sbjct: 316 MIMFVRTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVATDVAAR 375

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+    +  + + D      S    I   GRA R    + IL+     + +  +I+  
Sbjct: 376 GLDVDR--ITHVFNYDIPHDTESYVHRIGRTGRAGR--KGRAILFVTPRERRLLKSIERA 431

Query: 705 TRRREKQLE 713
           T+ R  ++E
Sbjct: 432 TKSRLNEIE 440


>gi|34763881|ref|ZP_00144785.1| ATP-dependent DNA helicase recG [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27886344|gb|EAA23615.1| ATP-dependent DNA helicase recG [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 619

 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 21/92 (22%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N ++  +H ++K  E+ +++   +  ++D+L+   ++  G+D+P   ++ I +A++ G  
Sbjct: 441 NKKIGIIHGKMKAKEKDDVMLKFKNKEYDILIATTVIEVGIDVPASTIMTIYNAERFGL- 499

Query: 666 RSKTSLIQTIGRAARNVN-SKVILYADTITKS 696
              ++L Q  GR  R    S   L +++IT++
Sbjct: 500 ---SALHQLRGRVGRGSKQSYCFLISNSITEN 528


>gi|317496137|ref|ZP_07954497.1| type III restriction enzyme [Gemella moribillum M424]
 gi|316913712|gb|EFV35198.1| type III restriction enzyme [Gemella moribillum M424]
          Length = 937

 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 10/119 (8%)

Query: 567 QVEDVYDEINLAAQQGLRI--LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           +V+ + D+IN     G R+  L+   +KR A+ L++    R  R   +  E    +R + 
Sbjct: 398 RVDHIIDKINYYGYSGDRVKGLVFCSSKREAQILSDAFNSRGFRTTSLTGEDGQEKREKE 457

Query: 625 IRDLRLGKFDVL---VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           I  L     D+L     +++  EG+DIPE   V +L   +   +      IQ +GR  R
Sbjct: 458 IEKLIADSGDILDYIFTVDIFNEGIDIPEVNQVVMLRPTQSAII-----FIQQLGRGLR 511


>gi|294055756|ref|YP_003549414.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615089|gb|ADE55244.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 406

 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A+ +T +L +   +V  MH+++    R   ++D + G   +LV  ++   GLDI    + 
Sbjct: 256 ADRITRWLQQHKYKVAAMHADLNQKARNRALQDFKDGNIKILVATDIASRGLDI--ANVT 313

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK--SIQLAIDETTRRRE 709
            +++ D           I   GRA R  ++  IL  D  +K  +I+  ID+   +R+
Sbjct: 314 HVINYDVPEHPEDYVHRIGRTGRAQREGDAATILAPDEESKLDAIEKFIDQLIPQRK 370


>gi|194216755|ref|XP_001495197.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX5
           (DEAD box protein 5) (RNA helicase p68) [Equus caballus]
          Length = 614

 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 402

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 403 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 438


>gi|187608185|ref|NP_001119895.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
 gi|169154730|emb|CAQ14635.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
          Length = 709

 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R G+
Sbjct: 481 DLLNATGKDSL-TLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGR 539

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSK 685
             ++V   +   GLDI     V   D  +D E ++    +T  +  +G A    N K
Sbjct: 540 CPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDK 596


>gi|157871774|ref|XP_001684436.1| DEAD box RNA helicase [Leishmania major strain Friedlin]
 gi|68127505|emb|CAJ05468.1| putative ATP dependent DEAD-box helicase [Leishmania major strain
           Friedlin]
          Length = 389

 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++YD + +A       ++   T++  E L + +      V  MH ++   ER EI+R  R
Sbjct: 248 ELYDSLTIA-----HAVVFCNTRKKVEQLAKKMTREKFAVSAMHGDMPQAERDEIMRQFR 302

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  +L   G+D+    LV   D        ++   I  IGR  R
Sbjct: 303 NGHSRVLITTDLWARGIDVERVSLVLSYD-----LPLAREQYIHRIGRTGR 348


>gi|120553574|ref|YP_957925.1| ATP-dependent DNA helicase RecG [Marinobacter aquaeolei VT8]
 gi|120323423|gb|ABM17738.1| ATP-dependent DNA helicase RecG [Marinobacter aquaeolei VT8]
          Length = 691

 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 8/111 (7%)

Query: 590 LTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           L  + AE   + L ER  ++ +  +H  +K  E+  ++   + G+ D+LV   ++  G+D
Sbjct: 498 LQCQAAEVTAQELVERLPDLSIGLVHGRLKAQEKAAVMERFKDGELDLLVATTVIEVGVD 557

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKS 696
           +P   L+ I + ++ G       L Q  GR  R   +   V++Y   ++ +
Sbjct: 558 VPNASLIIIENPERLGL----AQLHQLRGRVGRGEQASFCVLMYHPPLSNN 604


>gi|330944884|ref|XP_003306444.1| hypothetical protein PTT_19586 [Pyrenophora teres f. teres 0-1]
 gi|311316057|gb|EFQ85468.1| hypothetical protein PTT_19586 [Pyrenophora teres f. teres 0-1]
          Length = 486

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 16/104 (15%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+R AE+L + +     +V  +   ++  ER  II   R G+  VL+  N+L  G
Sbjct: 320 IIFVRTRRTAEELEKRMVAEGHKVAQLSGALEGPERDRIIDQFRSGEAKVLITTNVLARG 379

Query: 646 LDIPECGLVA---------ILDADKEGFLRSKTSLIQTIGRAAR 680
           +D+    +V           +DAD E +L         IGR  R
Sbjct: 380 IDVQSVTMVINYDVPTMANGIDADPETYLHR-------IGRTGR 416


>gi|326791296|ref|YP_004309117.1| type III restriction protein res subunit [Clostridium lentocellum
           DSM 5427]
 gi|326542060|gb|ADZ83919.1| type III restriction protein res subunit [Clostridium lentocellum
           DSM 5427]
          Length = 803

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 6/97 (6%)

Query: 591 TKRMAEDLTEYLYERN-IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           TK  A+DL +   E+  +R++ + S +      + I  L+  + D ++ +++L EG D P
Sbjct: 257 TKEKAKDLEKLYAEKTTLRLKRIDSSMSNNTVKKCIEALKNKELDGIICVDMLGEGFDFP 316

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              + AI +  K     S  +++Q IGR AR   S +
Sbjct: 317 NLKIAAIHEVHK-----SLANMLQFIGRFARTNASNI 348


>gi|288803817|ref|ZP_06409244.1| primosomal protein [Prevotella melaninogenica D18]
 gi|288333724|gb|EFC72172.1| primosomal protein [Prevotella melaninogenica D18]
          Length = 768

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK-------EGFLRSKTSLIQTIG 676
           +I D   GK ++L+G  ++ +GLD  +  +V IL+AD          + ++   + Q  G
Sbjct: 563 LINDFSTGKNNLLIGTQMISKGLDFDKVSVVGILNADSMLNYPDFRAYEQAFMMMSQVSG 622

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
           RA R     +++     TKS +L + +   R + Q
Sbjct: 623 RAGRKGRQGLVILQ---TKSPELPVIQQVVRNDYQ 654


>gi|255349176|ref|ZP_05381183.1| primosome assembly protein PriA [Chlamydia trachomatis 70]
 gi|255503713|ref|ZP_05382103.1| primosome assembly protein PriA [Chlamydia trachomatis 70s]
          Length = 753

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 36/159 (22%)

Query: 172 LLLGVTGSGKTFTMAKVI---EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           LL GVTGSGKT    +VI    A+ +  I++ P   L  Q  S FK    H   E  V +
Sbjct: 238 LLFGVTGSGKTEVYLQVIRKARALGKSVILLVPEVALTIQTLSFFKM---HFGSEVGVLH 294

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           Y     E    RT T+               H A+R L+     I++   S I+    ++
Sbjct: 295 YKLSDSE----RTQTW---------------HKASRGLIN----IIIGPRSAIF--CPIQ 329

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
           +   +IV  +   + +Q +L        Y+ +D+ ++RG
Sbjct: 330 NLGLIIVDEEHDSAYKQSDL-----PPFYQARDVAVMRG 363


>gi|238759438|ref|ZP_04620602.1| Type III restriction protein res subunit [Yersinia aldovae ATCC
           35236]
 gi|238702335|gb|EEP94888.1| Type III restriction protein res subunit [Yersinia aldovae ATCC
           35236]
          Length = 600

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           N    + L+I+ + L       + +    R  +  Y+HS   +   + ++  L+  + DV
Sbjct: 281 NETGDERLKIIASALNYEHCRQIVQAYRSRGCKAEYVHSLEDSASNLRVMDKLKNHELDV 340

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++ +  L EG D P+  + A+          + +  +Q +GR  R
Sbjct: 341 IIQVRKLGEGFDHPQLSVAAVF-----SIFSNLSPFVQFVGRIMR 380


>gi|194337413|ref|YP_002019207.1| ATP-dependent DNA helicase RecG [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309890|gb|ACF44590.1| ATP-dependent DNA helicase RecG [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 706

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 7/97 (7%)

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++L+  L+  ++R   +H ++   E+  ++   R G+ D+LVG  ++  G+D+P   ++ 
Sbjct: 513 QELSSTLFA-DLRSGLIHGQLSPDEKESVMEQFRRGEIDLLVGTTVIEVGVDVPNATVMV 571

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYA 690
           I  A++ G       L Q  GR  R  + ++  +LYA
Sbjct: 572 IEHAERFGL----AQLHQLRGRVGRGEHRSTCFLLYA 604


>gi|156848239|ref|XP_001647002.1| hypothetical protein Kpol_2000p112 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117684|gb|EDO19144.1| hypothetical protein Kpol_2000p112 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 988

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 12/117 (10%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER-IEIIRDLRLGKFDVLVGINLL 642
           +I+L    + M E + + L   NI   Y+H ++ + E+ I   R  +  +  +LVG  L+
Sbjct: 443 KIILVRKEREMVEIINQNLVNNNISSCYVHGKLTSEEKTISFNRFKKNKEKKILVGTKLV 502

Query: 643 REGLDIPECGLVAILD--------ADKEGFLRSKTSLIQTIGRAARN---VNSKVIL 688
            EG++IPE   V +++            G +R +++ I     A R+   +NSK I+
Sbjct: 503 SEGINIPELKYVILVNYLPQIHEYIQTAGRIRGESACITLWNEACRDEFSINSKCIV 559


>gi|148272405|ref|YP_001221966.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830335|emb|CAN01269.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 586

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E L E L  R      +  +V   +R   +  L+ GK D+LV  ++   
Sbjct: 260 MIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDILVATDVAAR 319

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  +   I +     + +  AI+
Sbjct: 320 GLDVDRISHVVNYDIPIDTESYVHR----IGRTGRAGR--SGAAISFVTPRERRLLTAIE 373

Query: 703 ETTRRREKQLEHNKKHNIN 721
           + TR+   ++      ++N
Sbjct: 374 KATRQPLTEMRMPSAEDVN 392


>gi|118785473|ref|XP_314684.3| AGAP008578-PA [Anopheles gambiae str. PEST]
 gi|116127754|gb|EAA10198.3| AGAP008578-PA [Anopheles gambiae str. PEST]
          Length = 596

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L   + E       +H +    ER   + D + G+ DVL+  ++   G
Sbjct: 427 LVFVETKRNADYLASLMSETQFPTTSIHGDRLQREREMALYDFKSGRMDVLIATSVAARG 486

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           LDI     V   D  K     S    +  IGR  R  N
Sbjct: 487 LDIKNVNHVVNYDLPK-----SIDDYVHRIGRTGRVGN 519


>gi|4758138|ref|NP_004387.1| probable ATP-dependent RNA helicase DDX5 [Homo sapiens]
 gi|300793700|ref|NP_001178324.1| probable ATP-dependent RNA helicase DDX5 [Bos taurus]
 gi|73965213|ref|XP_850467.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 2 [Canis
           familiaris]
 gi|109116805|ref|XP_001109860.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Macaca
           mulatta]
 gi|297487273|ref|XP_002696148.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2 [Bos
           taurus]
 gi|301778273|ref|XP_002924553.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Ailuropoda melanoleuca]
 gi|332227004|ref|XP_003262677.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Nomascus
           leucogenys]
 gi|129383|sp|P17844|DDX5_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5; AltName: Full=RNA helicase p68
 gi|35220|emb|CAA36324.1| unnamed protein product [Homo sapiens]
 gi|38318|emb|CAA33751.1| unnamed protein product [Homo sapiens]
 gi|2599360|gb|AAB84094.1| RNA helicase p68 [Homo sapiens]
 gi|16359122|gb|AAH16027.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens]
 gi|30582725|gb|AAP35589.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase,
           68kDa) [Homo sapiens]
 gi|61362303|gb|AAX42197.1| DEAD box polypeptide 5 [synthetic construct]
 gi|61362310|gb|AAX42198.1| DEAD box polypeptide 5 [synthetic construct]
 gi|119614608|gb|EAW94202.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, isoform CRA_a [Homo
           sapiens]
 gi|119614609|gb|EAW94203.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, isoform CRA_a [Homo
           sapiens]
 gi|123979568|gb|ABM81613.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [synthetic construct]
 gi|123994197|gb|ABM84700.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [synthetic construct]
 gi|168277560|dbj|BAG10758.1| ATP-dependent RNA helicase DDX5 [synthetic construct]
 gi|197692215|dbj|BAG70071.1| ATP-dependent RNA helicase DDX5 [Homo sapiens]
 gi|296476161|gb|DAA18276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2 [Bos taurus]
          Length = 614

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 402

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 403 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 438


>gi|88857830|ref|ZP_01132472.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Pseudoalteromonas tunicata D2]
 gi|88819447|gb|EAR29260.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Pseudoalteromonas tunicata D2]
          Length = 543

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R+ +  +E V +  N   +QG+ I     T   A+++  YL E N  +  +  E     R
Sbjct: 197 RATKAIIEQVIELSN--ERQGVMIFAA--TVEHAKEILSYLAEHNAVL--VTGETDNTTR 250

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
             I+RD +  K   LV +++L  G D P    +AIL
Sbjct: 251 DNIVRDFKARKIKYLVNVSVLTTGFDAPHVDFIAIL 286


>gi|114564866|ref|YP_752380.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114336159|gb|ABI73541.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 634

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V T+    +L E L  R      +H ++    R   +  L+ GK D+L+  ++   
Sbjct: 247 IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGKLDILIATDVAAR 306

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAAR 680
           GLD+   G V   D   D E ++      I   GRA R
Sbjct: 307 GLDVERIGHVVNYDIPYDSEAYVHR----IGRTGRAGR 340


>gi|330897623|gb|EGH29042.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 485

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VL+   ++  G+D+P  
Sbjct: 161 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 218

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 219 NTIIIERADKFGL----AQLHQLRGRVGRS 244


>gi|320093766|ref|ZP_08025614.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979303|gb|EFW10798.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 800

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+   E+++  L  R  R   +  +V   ER  ++  L+ G  DVLV  ++   G
Sbjct: 302 IVFVRTRVDVEEVSLELSGRGFRAAGISGDVAQTERERMVERLKSGSLDVLVATDVAARG 361

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LD+    LV   D  +E       + +  IGR  R
Sbjct: 362 LDVERISLVVNFDVPRE-----PEAYVHRIGRTGR 391


>gi|308455471|ref|XP_003090269.1| hypothetical protein CRE_17662 [Caenorhabditis remanei]
 gi|308265013|gb|EFP08966.1| hypothetical protein CRE_17662 [Caenorhabditis remanei]
          Length = 907

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 23/142 (16%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDL------TEYLYERNIRVRYMHSEVKTLE 620
           ++ED+  E N    Q  R ++ V T+  A  L       E L  +NIR  Y+    KT E
Sbjct: 552 KIEDLLTE-NHRENQNSRAIIFVQTRYDAITLKNILCDNENLLSQNIRTDYILGLNKTTE 610

Query: 621 -----------RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
                      ++E ++    G   VLV  ++  EGLDI EC LV      K  +  +  
Sbjct: 611 GSEDSAISRSDQVEKLKQFGSGGIRVLVSTSVAEEGLDISECNLVI-----KYNYATNVI 665

Query: 670 SLIQTIGRAARNVNSKVILYAD 691
           + +Q  GR   N +  +++  D
Sbjct: 666 AHVQRRGRGRANGSRSILITND 687


>gi|260914551|ref|ZP_05921019.1| ATP-dependent RNA helicase RhlE [Pasteurella dagmatis ATCC 43325]
 gi|260631342|gb|EEX49525.1| ATP-dependent RNA helicase RhlE [Pasteurella dagmatis ATCC 43325]
          Length = 442

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++  
Sbjct: 250 RGIVFVRRREYVRELSETLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVVTVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D        S  + +  IGR AR
Sbjct: 310 RGIDIEDVSHVMNFD-----LPYSADTYLHRIGRTAR 341


>gi|312111714|ref|YP_003990030.1| ATP-dependent DNA helicase RecG [Geobacillus sp. Y4.1MC1]
 gi|311216815|gb|ADP75419.1| ATP-dependent DNA helicase RecG [Geobacillus sp. Y4.1MC1]
          Length = 705

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 6/95 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LT Y Y     +  MH  + + E+ E+++     +  VLV   ++  G+++P   ++ I 
Sbjct: 517 LTHY-YRGKYNIGLMHGRLSSEEKEEVMKAFSENRIQVLVSTTVVEVGVNVPNATVMVIY 575

Query: 658 DADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691
           DA++ G       L Q  GR  R +  S  IL AD
Sbjct: 576 DAERFGL----AQLHQLRGRVGRGDEQSYCILIAD 606


>gi|229019051|ref|ZP_04175891.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1273]
 gi|229025297|ref|ZP_04181716.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1272]
 gi|228735988|gb|EEL86564.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1272]
 gi|228742253|gb|EEL92413.1| ATP-dependent DNA helicase recG [Bacillus cereus AH1273]
          Length = 682

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 498 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 557

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 558 GL----SQLHQLRGRVGRGSEQSYCLLIAD 583


>gi|227893771|ref|ZP_04011576.1| helicase [Lactobacillus ultunensis DSM 16047]
 gi|227864416|gb|EEJ71837.1| helicase [Lactobacillus ultunensis DSM 16047]
          Length = 941

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL-DADKEGFLRSKTSLIQTIGRAA 679
           R++++ DL  GK + ++ ++L  EG+DIP    + +L + D      S    IQ +GR  
Sbjct: 472 RVKVVSDLIRGKIEYIIAVDLFNEGIDIPALNQIIMLRNTD------SSIVFIQQLGRGL 525

Query: 680 RNVNSK 685
           R    K
Sbjct: 526 RKYPGK 531


>gi|170782512|ref|YP_001710845.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169157081|emb|CAQ02256.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 761

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 8/127 (6%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L++ +G + L+   T+  AE L + L +  I    +H ++    R   ++ L  GK  VL
Sbjct: 616 LSSGEG-KTLIFARTRAFAEQLADQLEDAGIPATSLHGDLNQARRTRNLQLLTSGKVRVL 674

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+ + + GLV   DA  E       S +   GR  R      ++    ITK+
Sbjct: 675 VATDVAARGIHVDDIGLVIQADAPDE-----YKSYLHRAGRTGRAGKQGTVVT--LITKA 727

Query: 697 IQLAIDE 703
            +  +D+
Sbjct: 728 RRRRMDD 734


>gi|170782231|ref|YP_001710564.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156800|emb|CAQ01964.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 585

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 8/139 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E L E L  R      +  +V   +R   +  L+ GK D+LV  ++   
Sbjct: 259 MIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDILVATDVAAR 318

Query: 645 GLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  +   I +     + +  AI+
Sbjct: 319 GLDVDRISHVVNYDIPIDTESYVHR----IGRTGRAGR--SGAAISFVTPRERRLLTAIE 372

Query: 703 ETTRRREKQLEHNKKHNIN 721
           + TR+   ++      ++N
Sbjct: 373 KATRQPLTEMRMPSAEDVN 391


>gi|225426815|ref|XP_002276531.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147852111|emb|CAN82264.1| hypothetical protein VITISV_009282 [Vitis vinifera]
          Length = 557

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR+ +D    L  R ++   +H ++  L R   ++  + G+  VLV   L   GLD+ E
Sbjct: 420 TKRL-KDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVSE 478

Query: 651 CGLVAILD 658
           C LV  LD
Sbjct: 479 CDLVVNLD 486


>gi|4490565|emb|CAB38640.1| RNA helicase [Plasmodium falciparum]
          Length = 182

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 36/64 (56%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           T++  + LT+ ++ R   V  MH ++   +R  I+R+ R G   VLV  +LL  G+D+ +
Sbjct: 102 TRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARGIDVQQ 161

Query: 651 CGLV 654
             LV
Sbjct: 162 VSLV 165


>gi|120599647|ref|YP_964221.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120559740|gb|ABM25667.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 481

 Score = 38.1 bits (87), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 35/75 (46%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TK  AE L + L    I     H +     R  ++ D +LGK  VLV  ++  
Sbjct: 248 QVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFKLGKLRVLVATDVAA 307

Query: 644 EGLDIPECGLVAILD 658
            GLDI    LV  L+
Sbjct: 308 RGLDIQALPLVINLE 322


>gi|322379145|ref|ZP_08053542.1| transcription-repair coupling factor [Helicobacter suis HS1]
 gi|322380425|ref|ZP_08054627.1| transcription-repair coupling factor [Helicobacter suis HS5]
 gi|321147136|gb|EFX41834.1| transcription-repair coupling factor [Helicobacter suis HS5]
 gi|321148441|gb|EFX42944.1| transcription-repair coupling factor [Helicobacter suis HS1]
          Length = 986

 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N+RV  +HS+    E  +I+ +   G F+VL+  +++  G+ +P    + I  AD+ G  
Sbjct: 710 NLRVEILHSKTPAKEVEQIMVNFAQGHFEVLLCTSIVESGIHLPNANTIIIEQADRFGL- 768

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R 
Sbjct: 769 ---ADLHQLRGRVGRG 781


>gi|241760372|ref|ZP_04758467.1| dead/deah box helicase [Neisseria flavescens SK114]
 gi|241319250|gb|EER55728.1| dead/deah box helicase [Neisseria flavescens SK114]
          Length = 487

 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TK+  + +T  L  RNI  + +H +     R+E +   + G   VLV  ++  
Sbjct: 274 QVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTLRVLVATDVAA 333

Query: 644 EGLDIPECGLV 654
            GLDI E   V
Sbjct: 334 RGLDIAELPFV 344


>gi|269122133|ref|YP_003310310.1| ATP-dependent DNA helicase RecG [Sebaldella termitidis ATCC 33386]
 gi|268616011|gb|ACZ10379.1| ATP-dependent DNA helicase RecG [Sebaldella termitidis ATCC 33386]
          Length = 688

 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           + + +  +H  +K  ++ E++   R G  ++LV   ++  G+++P   ++ I DA + G 
Sbjct: 508 KGMEIALIHGRMKNKDKQEVMEKFRKGNLNILVSTTVIEVGVNVPNATIMVIRDAQRFGL 567

Query: 665 LRSKTSLIQTIGRAAR 680
               +SL Q  GR  R
Sbjct: 568 ----SSLHQLRGRVGR 579


>gi|196015875|ref|XP_002117793.1| hypothetical protein TRIADDRAFT_33010 [Trichoplax adhaerens]
 gi|190579678|gb|EDV19769.1| hypothetical protein TRIADDRAFT_33010 [Trichoplax adhaerens]
          Length = 369

 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 36/73 (49%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V  K  A+ L + L    I V  +HS+    +R  ++++ RLGK  +L+   L+  G
Sbjct: 283 LVFVQDKERAKQLFQELIYDGINVEVIHSDRTQAQRDNVVKNFRLGKIWILIATELMSRG 342

Query: 646 LDIPECGLVAILD 658
           +D     LV   D
Sbjct: 343 IDFKGVNLVINYD 355


>gi|187476686|ref|YP_784709.1| ATP-dependent RNA helicase [Bordetella avium 197N]
 gi|115421272|emb|CAJ47777.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
          Length = 592

 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I+ T  TKR A+DL + L E+      +H ++   +R   +  L+ G+  VLV  ++   
Sbjct: 249 IVFTA-TKRGADDLADRLSEQGFSAAALHGDMNQRQRTRTLTQLQRGQVRVLVATDVAAR 307

Query: 645 GLDI 648
           G+D+
Sbjct: 308 GIDV 311


>gi|77736089|ref|NP_001029743.1| ATP-dependent RNA helicase DDX19A [Bos taurus]
 gi|122140837|sp|Q3ZBV2|DD19A_BOVIN RecName: Full=ATP-dependent RNA helicase DDX19A; AltName: Full=DEAD
           box protein 19A
 gi|73587381|gb|AAI03094.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19A [Bos taurus]
 gi|296478245|gb|DAA20360.1| ATP-dependent RNA helicase DDX19A [Bos taurus]
          Length = 478

 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++Y  I +A     + ++   T++ A  L   L +   +V  +  E+   +R  +I   R
Sbjct: 325 NIYGAITIA-----QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFR 379

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            GK  VLV  N+   G+D+ +  +V   D   DK+G   ++T L   IGR  R
Sbjct: 380 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYL-HRIGRTGR 431


>gi|146294196|ref|YP_001184620.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145565886|gb|ABP76821.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 550

 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 16/122 (13%)

Query: 553 GLVDPPVEI-----RSARTQVEDVYDEINLAAQQGL-----------RILLTVLTKRMAE 596
           GLV+ PVEI      +A T V+     ++   +  L           ++L+   TK  A 
Sbjct: 209 GLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKAALLTQLIKQHDWQQVLVFSRTKHGAN 268

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            L + L E  I+   +H       R + + D + G+  VLV  ++   GLDI +   V  
Sbjct: 269 RLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVATDIAARGLDIDQLPQVVN 328

Query: 657 LD 658
            D
Sbjct: 329 FD 330


>gi|330942650|gb|EGH45220.1| transcription-repair coupling factor [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 211

 Score = 38.1 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ +F ++
Sbjct: 130 LDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMG-SKLPFRIDLFDDE 188

Query: 357 IEEISEFYPLTGQKIRNVETIKI 379
           IE +  F P T + I  VE++++
Sbjct: 189 IETLRTFDPDTQRSIDKVESVRL 211


>gi|302850370|ref|XP_002956712.1| hypothetical protein VOLCADRAFT_77220 [Volvox carteri f.
           nagariensis]
 gi|300257927|gb|EFJ42169.1| hypothetical protein VOLCADRAFT_77220 [Volvox carteri f.
           nagariensis]
          Length = 648

 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 2/130 (1%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    KR  + + EYL  + +    +H +    +R   I   + G+ DVLV  ++  +
Sbjct: 457 VLIFAENKRDVDAIHEYLMVQGVEAVAVHGDKAQEDRHAAIHQFKAGEKDVLVATDVASK 516

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P+   V   D  +E  + +    I   GR  +   +   +     +++I L +   
Sbjct: 517 GLDFPDIQHVINYDMPEE--IENYVHRIGRTGRCGKTGVATTFINTKQCSETILLDLKHL 574

Query: 705 TRRREKQLEH 714
            R  ++++ H
Sbjct: 575 LREAKQRVPH 584


>gi|222097300|ref|YP_002531357.1| ATP-dependent DNA helicase recg [Bacillus cereus Q1]
 gi|221241358|gb|ACM14068.1| ATP-dependent DNA helicase RecG [Bacillus cereus Q1]
          Length = 657

 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 473 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 532

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 533 GL----SQLHQLRGRVGRGSEQSYCLLIAD 558


>gi|195069886|ref|XP_001997052.1| GH22580 [Drosophila grimshawi]
 gi|193891570|gb|EDV90436.1| GH22580 [Drosophila grimshawi]
          Length = 793

 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 16/129 (12%)

Query: 567 QVEDVYDE-----------INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           Q+ DV DE             ++ +   + ++ V TK+  +++T  +  +  R   +H +
Sbjct: 367 QIVDVCDESEKIAKLVQLLTQISGENETKTIIFVETKKRVDEITRNISRQGWRACAIHGD 426

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
               ER  ++   R G+  +LV  ++   GLD+ +   V   D     +  +    +  I
Sbjct: 427 KSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYD-----YPSNSEDYVHRI 481

Query: 676 GRAARNVNS 684
           GR  R+ N+
Sbjct: 482 GRTGRSNNT 490


>gi|167750970|ref|ZP_02423097.1| hypothetical protein EUBSIR_01955 [Eubacterium siraeum DSM 15702]
 gi|167656149|gb|EDS00279.1| hypothetical protein EUBSIR_01955 [Eubacterium siraeum DSM 15702]
          Length = 677

 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N+    +H ++K  ++  +++D +  K  VLV  +++  G+D+P   ++ I +A++ G  
Sbjct: 498 NVPTGLLHGKMKQADKDAVMQDFKDNKLKVLVATSVIEVGVDVPNAVVMVIENAEQFGL- 556

Query: 666 RSKTSLIQTIGRAARNV-NSKVILYAD 691
              + L Q  GR  R    S  IL  D
Sbjct: 557 ---SQLHQLRGRVGRGTEQSHCILVTD 580


>gi|160937140|ref|ZP_02084503.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440041|gb|EDP17789.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
           BAA-613]
          Length = 569

 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  +DL + L  R      +H ++K ++R  ++   R G+ D+LV  ++   G+D+ +
Sbjct: 252 TKRQVDDLVQELQGRGYFAEGLHGDLKQVQRDRVMDSFRNGRTDILVATDVAARGIDVGD 311

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
              V   D   D E ++      I   GRA R
Sbjct: 312 VEAVFNYDIPQDDEYYVHR----IGRTGRAGR 339


>gi|120538559|gb|AAI29874.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
          Length = 615

 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 402

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 403 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 438


>gi|55507560|gb|AAV52794.1| unknown [Homo sapiens]
          Length = 362

 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 150 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 208

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 209 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 267

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 268 ---NITKDL 273


>gi|49478911|ref|YP_037916.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330467|gb|AAT61113.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 657

 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 473 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 532

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 533 GL----SQLHQLRGRVGRGSEQSYCLLIAD 558


>gi|7211427|gb|AAF40306.1|AF156667_1 RNA helicase [Vigna radiata]
          Length = 713

 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 15/151 (9%)

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           AR+Q+  + D I   +  G  I+ T  TK  A  L   L       R +H +++  +R  
Sbjct: 368 ARSQL--IPDIIRCYSSGGRTIIFTE-TKESASQLAGLLPG----ARALHGDIQQAQREV 420

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +   R GKF  LV  N+   GLDI +  L+   +     F R   S I   GR  R  N
Sbjct: 421 TLFGFRSGKFMTLVATNVAARGLDINDVQLIIQCE-----FPREVESYIHRSGRTGRAGN 475

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEH 714
           + V   A T+    +  I +  R    + EH
Sbjct: 476 TGV---AGTLYDPKRSNISKIERESGVKFEH 503


>gi|73969113|ref|XP_860733.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 12 [Canis
           familiaris]
          Length = 656

 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 17/161 (10%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393

Query: 637 VGINLLREGLDIPECGLVAILDAD---KEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  ++   GL    C  V + D        +  S    +  IGR AR+ N K   Y    
Sbjct: 394 IATDVASRGLGF--CIYVYVEDVKFVINYDYPNSSEDYVHRIGRTARSTN-KGTAYTFFT 450

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
             +++ A     R   K LE         Q++  K+M+++D
Sbjct: 451 PGNLKQA-----RELIKVLEEAN------QAINPKLMQLVD 480


>gi|65306809|gb|AAY41942.1| vasa-like protein [Anopheles gambiae]
          Length = 596

 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L   + E       +H +    ER   + D + G+ DVL+  ++   G
Sbjct: 427 LVFVETKRNADYLASLMSETQFPTTSIHGDRLQREREMALYDFKSGRMDVLIATSVAARG 486

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           LDI     V   D  K     S    +  IGR  R  N
Sbjct: 487 LDIKNVNHVVNYDLPK-----SIDDYVHRIGRTGRVGN 519


>gi|295399774|ref|ZP_06809755.1| ATP-dependent DNA helicase RecG [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978177|gb|EFG53774.1| ATP-dependent DNA helicase RecG [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 689

 Score = 38.1 bits (87), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 6/95 (6%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LT Y Y     +  MH  + + E+ E+++     +  VLV   ++  G+++P   ++ I 
Sbjct: 501 LTHY-YRGKYNIGLMHGRLSSEEKEEVMKAFSENRIQVLVSTTVVEVGVNVPNATVMVIY 559

Query: 658 DADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691
           DA++ G       L Q  GR  R +  S  IL AD
Sbjct: 560 DAERFGL----AQLHQLRGRVGRGDEQSYCILIAD 590


>gi|294141531|ref|YP_003557509.1| transcription-repair coupling factor [Shewanella violacea DSS12]
 gi|293328000|dbj|BAJ02731.1| transcription-repair coupling factor [Shewanella violacea DSS12]
          Length = 1157

 Score = 38.1 bits (87), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 44/226 (19%), Positives = 93/226 (41%), Gaps = 13/226 (5%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            + S  K Q L  + G  +  T+A +++      + +  +   A  L SE         +
Sbjct: 11  AVKSASKAQTLYTLGGVSQAITLASLVQNHAGITVAVTHDTPTALLLESE---------L 61

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
           +Y +   D+  P    P  +T      S ++ +   R      L      +V+  +S + 
Sbjct: 62  DYLLKDSDF--PVWLFPDRETLPYDSFSPHQDLVSQRLETLSRLPHAKQGLVIVPLSTLM 119

Query: 283 GIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                +S+ +  ++ LK GD+   +++   L+   Y   +     G F V G  I++FP 
Sbjct: 120 VRLPPKSFLAGNVLMLKKGDNYCLQDVKQQLINTGYHLVEQVYEHGEFAVRGSIIDLFPM 179

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
             E   +R+ +F +++E I  F P + +    +++I++     + T
Sbjct: 180 GSEQ-PFRIELFDDEVESIRHFDPESQRSSGEIDSIRLLPAKEFPT 224


>gi|291557450|emb|CBL34567.1| ATP-dependent DNA helicase RecG [Eubacterium siraeum V10Sc8a]
          Length = 677

 Score = 38.1 bits (87), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N+    +H ++K  ++  +++D +  K  VLV  +++  G+D+P   ++ I +A++ G  
Sbjct: 498 NVPTGLLHGKMKQADKDAVMQDFKDNKLKVLVATSVIEVGVDVPNAVVMVIENAEQFGL- 556

Query: 666 RSKTSLIQTIGRAARNV-NSKVILYAD 691
              + L Q  GR  R    S  IL  D
Sbjct: 557 ---SQLHQLRGRVGRGTEQSHCILVTD 580


>gi|254751166|ref|ZP_05203205.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Vollum]
          Length = 564

 Score = 38.1 bits (87), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 380 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 439

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 440 GL----SQLHQLRGRVGRGSEQSYCLLIAD 465


>gi|300774874|ref|ZP_07084737.1| transcription-repair coupling factor [Chryseobacterium gleum ATCC
           35910]
 gi|300506689|gb|EFK37824.1| transcription-repair coupling factor [Chryseobacterium gleum ATCC
           35910]
          Length = 1122

 Score = 38.1 bits (87), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H +++  +  + + D   GK+DVLV   ++  G+D+P    + I DA + G    
Sbjct: 795 RVITGHGQMEGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANTIFINDAQRFGM--- 851

Query: 668 KTSLIQTIGRAARNVNSKVILY 689
              L Q  GR  R+ N K   Y
Sbjct: 852 -ADLHQMRGRVGRS-NRKAFCY 871


>gi|119773945|ref|YP_926685.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           amazonensis SB2B]
 gi|119766445|gb|ABL99015.1| DEAD/DEAH box helicase domain protein [Shewanella amazonensis SB2B]
          Length = 432

 Score = 38.1 bits (87), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 10/131 (7%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           PVE R  R  + ++    N       R+L+   T+   E LTE L    I    +HSE  
Sbjct: 225 PVEQRRKRELLSELIGRKNWQ-----RVLVFSATREDCEKLTEELNLDGIPSAVIHSEKA 279

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
              R   ++D   GK  VLV   +   GLDIP+   V   D     FL      +  +GR
Sbjct: 280 QGTRRRALKDFTEGKIRVLVSTEVAARGLDIPDLEYVVNFDLP---FL--PEDYVHRVGR 334

Query: 678 AARNVNSKVIL 688
             R   S V +
Sbjct: 335 TGRAGKSGVAI 345


>gi|148657260|ref|YP_001277465.1| excinuclease ABC subunit C [Roseiflexus sp. RS-1]
 gi|148569370|gb|ABQ91515.1| Excinuclease ABC subunit C [Roseiflexus sp. RS-1]
          Length = 669

 Score = 38.1 bits (87), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 27/35 (77%), Gaps = 2/35 (5%)

Query: 759 KGKAHL--KSLRKQMHLAADNLNFEEAARIRDEIK 791
           +GK+ L  K+LR+QM  AA+ L+FE AAR+RD I+
Sbjct: 217 EGKSDLVVKTLRRQMEEAAERLDFERAARLRDSIR 251


>gi|30584123|gb|AAP36310.1| Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA
           helicase, 68kDa) [synthetic construct]
 gi|60653929|gb|AAX29657.1| DEAD box polypeptide 5 [synthetic construct]
          Length = 615

 Score = 38.1 bits (87), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 402

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 403 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 438


>gi|56090441|ref|NP_001007614.1| probable ATP-dependent RNA helicase DDX5 [Rattus norvegicus]
 gi|50927691|gb|AAH79036.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Rattus norvegicus]
 gi|149054596|gb|EDM06413.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
 gi|149054597|gb|EDM06414.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
 gi|149054598|gb|EDM06415.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
          Length = 615

 Score = 38.1 bits (87), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 402

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 403 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 438


>gi|49475736|ref|YP_033777.1| ATP-dependent DNA helicase recG [Bartonella henselae str.
           Houston-1]
 gi|49238543|emb|CAF27779.1| ATP-dependent DNA helicase recG [Bartonella henselae str.
           Houston-1]
          Length = 702

 Score = 38.1 bits (87), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H ++ T ++   +   + G   +LV   ++  G+DIP+  ++ I  A+  G     
Sbjct: 520 VGMIHGKMSTDKKEAAMASFKCGNIGILVATTVIEVGVDIPDASIIIIEHAEHFGL---- 575

Query: 669 TSLIQTIGRAARN--VNSKVILYADTITK 695
           + L Q  GR  R    +S ++LY D +TK
Sbjct: 576 SQLHQLRGRVGRGEKKSSCILLYKDPLTK 604


>gi|16077810|ref|NP_388624.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221308581|ref|ZP_03590428.1| hypothetical protein Bsubs1_04163 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312906|ref|ZP_03594711.1| hypothetical protein BsubsN3_04119 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317830|ref|ZP_03599124.1| hypothetical protein BsubsJ_04073 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322104|ref|ZP_03603398.1| hypothetical protein BsubsS_04164 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81815767|sp|O34750|YFML_BACSU RecName: Full=Putative ATP-dependent RNA helicase yfmL
 gi|2443255|dbj|BAA22326.1| YfmL [Bacillus subtilis]
 gi|2633067|emb|CAB12572.1| putative ATP-dependent RNA helicase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 376

 Score = 38.1 bits (87), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 7/87 (8%)

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
            E L   ++ +  +HSE K +ER +II     G+F +L+  ++   GLDI     V   D
Sbjct: 258 AEKLAYHHVELGVLHSEAKKMERAKIIATFEDGEFPLLLATDIAARGLDIENLPYVIHAD 317

Query: 659 -ADKEGFL-RSKTSLIQTIGRAARNVN 683
             D++G++ RS  +     GRA +  N
Sbjct: 318 IPDEDGYVHRSGRT-----GRAGKEGN 339


>gi|331003610|ref|ZP_08327106.1| hypothetical protein HMPREF0491_01968 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412330|gb|EGG91722.1| hypothetical protein HMPREF0491_01968 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 583

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +I V Y+H  +        + D   G  DVLV   ++  GLD+P    + + DAD+ G  
Sbjct: 272 DINVEYVHGRMDERHLEARMVDFINGDVDVLVTTTIVETGLDVPNANTIIVHDADRLGL- 330

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
              + L Q  GR  R   SK   YA  +    +L  +E ++R
Sbjct: 331 ---SQLYQLRGRVGR---SKRSAYAFLMYTRNKLLSEEASKR 366


>gi|328881629|emb|CCA54868.1| Excinuclease ABC subunit C [Streptomyces venezuelae ATCC 10712]
          Length = 658

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 28/34 (82%)

Query: 763 HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +++ L KQM LAA+++ +E+AAR+RD+I+ L+ +
Sbjct: 210 YIRRLEKQMMLAAEDMEYEKAARLRDDIEALRRA 243


>gi|324327752|gb|ADY23012.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 682

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 498 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 557

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 558 GL----SQLHQLRGRVGRGSEQSYCLLIAD 583


>gi|291531081|emb|CBK96666.1| ATP-dependent DNA helicase RecG [Eubacterium siraeum 70/3]
          Length = 677

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           N+    +H ++K  ++  +++D +  K  VLV  +++  G+D+P   ++ I +A++ G  
Sbjct: 498 NVPTGLLHGKMKQADKDAVMQDFKDNKLKVLVATSVIEVGVDVPNAVVMVIENAEQFGL- 556

Query: 666 RSKTSLIQTIGRAARNV-NSKVILYAD 691
              + L Q  GR  R    S  IL  D
Sbjct: 557 ---SQLHQLRGRVGRGTEQSHCILVTD 580


>gi|255940232|ref|XP_002560885.1| Pc16g05440 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585508|emb|CAP93214.1| Pc16g05440 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1162

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 39/81 (48%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A +  R L+ V  +  A+DL + L  +      +H     ++R   I++ + G F +LV 
Sbjct: 769 ANEDYRTLIFVDRQEAADDLLKQLMYKGYPCMSIHGGKDQIDRDSTIQEFKAGVFPILVA 828

Query: 639 INLLREGLDIPECGLVAILDA 659
            ++   GLD+ +  LV   DA
Sbjct: 829 TSVAARGLDVKQLKLVVNYDA 849


>gi|183984436|ref|YP_001852727.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
           marinum M]
 gi|183177762|gb|ACC42872.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
           marinum M]
          Length = 1222

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 1/109 (0%)

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +VV++V  +    + +   Q  V L +G  +   E+++ LV+  Y R D+   RG F V 
Sbjct: 132 VVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVR 191

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           G  +++F    E    RV  +G++I E+  F     + I  +E   + A
Sbjct: 192 GGILDLFAPTAEHPV-RVEFWGDEITEMRMFSVADQRSIPEIEVSTLVA 239


>gi|158297447|ref|XP_317676.4| AGAP007825-PA [Anopheles gambiae str. PEST]
 gi|157015199|gb|EAA12654.5| AGAP007825-PA [Anopheles gambiae str. PEST]
          Length = 670

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 34/149 (22%)

Query: 87  SEKQTREISEQTMTPSVQALARLIQSD-NPLLKNGKIWTPHRSWSINNHSKDITFFQMQT 145
           SEK+  E++E+          R+ + D N  +K GKI  P RSW  +   K+I     + 
Sbjct: 364 SEKEVDEMTERDW--------RIFREDYNITIKGGKIPNPIRSWLESGFPKEILEIIDKV 415

Query: 146 DYH-PSGDQPAAIAQLLKGIHSREKVQLLLGV--TGSGKTFT--------------MAKV 188
            Y  P+  Q  AI     G+ +R+    ++G+  TGSGKT                + ++
Sbjct: 416 GYKDPTPIQRQAIPI---GLQNRD----IIGIAETGSGKTLAFLIPLLTWIQSLPKIDRL 468

Query: 189 IEAMQRP-AIVMAPNKILAAQLYSEFKNF 216
             A Q P AI++AP + LA Q+  E + F
Sbjct: 469 ETADQGPYAIILAPTRELAQQIEEETQKF 497


>gi|153939515|ref|YP_001391807.1| primosome assembly protein PriA [Clostridium botulinum F str.
           Langeland]
 gi|152935411|gb|ABS40909.1| primosomal protein N' [Clostridium botulinum F str. Langeland]
 gi|295319832|gb|ADG00210.1| primosomal protein N' [Clostridium botulinum F str. 230613]
          Length = 735

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT----FTMAKVIEAMQRPAIVMAPNKIL 205
           +GDQ  A+ ++L   +S  K+ L+ GVTGSGKT      + K+IE   + +I++ P   L
Sbjct: 202 NGDQSLALYRIL---NSNRKLFLIHGVTGSGKTEIYMHLVKKLIEK-DKDSIILVPEISL 257

Query: 206 AAQLYSEFKNFF 217
             Q+   FK  F
Sbjct: 258 TPQMVERFKGRF 269


>gi|319425659|gb|ADV53733.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 481

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 35/75 (46%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TK  AE L + L    I     H +     R  ++ D +LGK  VLV  ++  
Sbjct: 248 QVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFKLGKLRVLVATDVAA 307

Query: 644 EGLDIPECGLVAILD 658
            GLDI    LV  L+
Sbjct: 308 RGLDIQALPLVINLE 322


>gi|308806037|ref|XP_003080330.1| DEAD/DEAH box helicase family protein / pentatricopeptide (ISS)
           [Ostreococcus tauri]
 gi|116058790|emb|CAL54497.1| DEAD/DEAH box helicase family protein / pentatricopeptide (ISS)
           [Ostreococcus tauri]
          Length = 518

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 34/71 (47%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+     R  +D+   L  R +RV  +H  +  +ER + +   R G F  LV  +L  
Sbjct: 352 RALIFCNFGRRLQDVQAKLGARGMRVGILHGGMDKMERQKELAAFRRGDFRALVVSDLAA 411

Query: 644 EGLDIPECGLV 654
            GLD+ +C  V
Sbjct: 412 RGLDVDDCDAV 422


>gi|6014919|sp|O61305|DDX19_DROME RecName: Full=DEAD-box helicase Dbp80
 gi|3108197|gb|AAC23709.1| DEAD-box helicase [Drosophila melanogaster]
          Length = 460

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR A  L   +      V  +  ++  ++R++++   R G   VL+  N+L  G+DI +
Sbjct: 323 TKRTAAWLAAKMTSDGHSVAVLTGDLTVVQRLDVLDRFRSGLEKVLITTNILSRGIDIEQ 382

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
             +V   D   D +G    +T L   IGR  R   S + +   T  K++++  D
Sbjct: 383 LQVVVNFDLPVDLDGMADCETYL-HRIGRTGRFGKSGIAINLITDEKTMKVCSD 435


>gi|146292357|ref|YP_001182781.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145564047|gb|ABP74982.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 481

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 35/75 (46%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+   TK  AE L + L    I     H +     R  ++ D +LGK  VLV  ++  
Sbjct: 248 QVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFKLGKLRVLVATDVAA 307

Query: 644 EGLDIPECGLVAILD 658
            GLDI    LV  L+
Sbjct: 308 RGLDIQALPLVINLE 322


>gi|332023103|gb|EGI63364.1| Putative ATP-dependent RNA helicase DDX23 [Acromyrmex echinatior]
          Length = 789

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 30/146 (20%)

Query: 92  REISEQTMTPSVQALARLIQSD-NPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH-- 148
           R  SE+ +    +   R+ + D N  +K G+I  P RSW  +   K+I     +  Y   
Sbjct: 325 RHWSEKALNEMTERDWRIFREDYNITIKGGRIPDPIRSWKESGFPKEILDIIDKVGYKDL 384

Query: 149 -PSGDQPAAIAQLLKGIHSREKVQLLLGV--TGSGKTFT--------------MAKVIEA 191
            P   Q   I     G+ +R+    ++GV  TGSGKT                + ++ EA
Sbjct: 385 TPIQRQAIPI-----GLQNRD----IIGVAETGSGKTLAFLIPLLLWITSLPKIERLEEA 435

Query: 192 MQRP-AIVMAPNKILAAQLYSEFKNF 216
            Q P +I++AP + LA Q+  E   F
Sbjct: 436 DQGPYSIILAPTRELAQQIEEETNKF 461


>gi|328699354|ref|XP_001948802.2| PREDICTED: ATP-dependent RNA helicase DDX19A-like [Acyrthosiphon
           pisum]
          Length = 464

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA  L   + E+   V  +  E+   +RI ++   R GK  VLV  N+L  G+DI +
Sbjct: 325 TKKMALWLINQMAEQGHAVALLSGELTIEQRISVLDRFREGKEKVLVTTNVLSRGIDIEQ 384

Query: 651 CGLVAILDADKEGFLRSK-TSLIQTIGRAAR 680
             +V   D      L     + +  IGR  R
Sbjct: 385 VTIVINFDLPVTVTLEPDYDTYLHRIGRTGR 415


>gi|328543941|ref|YP_004304050.1| Mfd, transcription-repair coupling factor [polymorphum gilvum
           SL003B-26A1]
 gi|326413685|gb|ADZ70748.1| Mfd, transcription-repair coupling factor [Polymorphum gilvum
           SL003B-26A1]
          Length = 1166

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 10/119 (8%)

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE L E + E  ++V   H ++   +  +++     GK+DVL+   ++  GLDIP    +
Sbjct: 841 AEFLAESVPE--VKVAVAHGQMAPGQLDDVMNAFYEGKYDVLLSTTIVESGLDIPTANTL 898

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
            +  AD  G       L Q  GR  R   SKV  YA   T      +  T  RR K L+
Sbjct: 899 IVHRADMFGL----AQLYQLRGRVGR---SKVRAYA-LFTVPANKTLTATAERRLKVLQ 949


>gi|313159146|gb|EFR58521.1| ATP-dependent DNA helicase RecG [Alistipes sp. HGB5]
          Length = 702

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 17/162 (10%)

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H ++K  ++ E +R  + G+ D++V  +++  G+D+P   ++ I  A++ G     + L 
Sbjct: 523 HGKMKPADKEESMRQFKSGEADIMVATSVIEVGVDVPNATVMVIESAERFGL----SQLH 578

Query: 673 QTIGRAARNVNSK--VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           Q  GR  R       +++  + ++K       E+  R +   E N    +    +K +  
Sbjct: 579 QLRGRVGRGGEQSYCILMSGEKLSK-------ESRARLQAMCETNDGFRLAELDLKLRGA 631

Query: 731 EVIDPILLE----DAATTNISIDAQQLSLSKKKGKAHLKSLR 768
             I+  L      D    N ++D Q L++S++   A L + R
Sbjct: 632 GDINGTLQSGMAFDLKIANPTLDVQILTVSREAAAAILTADR 673


>gi|312623038|ref|YP_004024651.1| transcription-repair coupling factor [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203505|gb|ADQ46832.1| transcription-repair coupling factor [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 1141

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++++   H ++   E  E++ D   G++DVLV   ++  G+D+P    + + D+D+ G  
Sbjct: 841 SVKIACAHGKMSEEELEEVLIDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGL- 899

Query: 666 RSKTSLIQTIGRAARN 681
                L Q  GR  R+
Sbjct: 900 ---AQLYQLRGRVGRS 912


>gi|312868641|ref|ZP_07728835.1| helicase C-terminal domain protein [Lactobacillus oris PB013-T2-3]
 gi|311095850|gb|EFQ54100.1| helicase C-terminal domain protein [Lactobacillus oris PB013-T2-3]
          Length = 527

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 8/113 (7%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +E + DE+    Q    ++   L  R A+  T+ L ER +    +  + +  +R +I+ D
Sbjct: 218 LEQIADEMVKQCQDRKTVVFLPLV-RTAKQFTQLLRERGMTAAEVDGQSE--DREQILAD 274

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              G++ VL    LL EG D P+   + +L   K      ++  +Q +GR  R
Sbjct: 275 YAGGRYQVLCNSMLLTEGWDCPQVDCIVVLRPTK-----VRSLYVQMVGRGTR 322


>gi|320107807|ref|YP_004183397.1| ATP-dependent DNA helicase RecG [Terriglobus saanensis SP1PR4]
 gi|319926328|gb|ADV83403.1| ATP-dependent DNA helicase RecG [Terriglobus saanensis SP1PR4]
          Length = 747

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           R+IR+  +H ++   E+   +R  + G+ DVLV   ++  G+D+P   ++ I  A++ G 
Sbjct: 563 RDIRLGLLHGKLSADEKEVTMRRFQRGEIDVLVATTVIEVGVDVPNASVMVIEHAERFGM 622

Query: 665 LRSKTSLIQTIGRAARN 681
                 + Q  GR  R 
Sbjct: 623 ----AQMHQLRGRVGRG 635


>gi|303238769|ref|ZP_07325301.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593648|gb|EFL63364.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 544

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKR  ++LT  L  R      +H ++K  +R  ++   R G+ D+L+  ++   G+D+  
Sbjct: 252 TKRQVDELTSSLQSRGYSTEALHGDMKQDQRNRVMTKFRKGQIDILIATDVAARGIDVDN 311

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
              V   D  +D+E +       +  IGR  R
Sbjct: 312 VEAVFNYDLPSDEEYY-------VHRIGRTGR 336


>gi|260575999|ref|ZP_05843993.1| type III restriction protein res subunit [Rhodobacter sp. SW2]
 gi|259021698|gb|EEW25000.1| type III restriction protein res subunit [Rhodobacter sp. SW2]
          Length = 1629

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 89/190 (46%), Gaps = 27/190 (14%)

Query: 39  KTMVADAMRRIRSEAG------KHRKNAAKRMLIHQRENTASKGE--FQSQSSISMSEKQ 90
           K +  D + ++R+EAG      K     A+   IH     ++ G+  F+ +  +  +EK+
Sbjct: 61  KDVGIDLVAKLRNEAGFAAIQAKFYAADARIQKIHIDSFISASGKEPFRRRVVLDTTEKE 120

Query: 91  TREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQT--DYH 148
               +E+ +   V  + R+  +D   L+  +I      W+I     +I     ++  D+ 
Sbjct: 121 WGTNAEEMIRDQVIPVVRIGLTD---LRESRI-----DWTIFEARGEIVLSAKKSLLDH- 171

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ---RPAIVMAPNKIL 205
               Q  A+A + KG+ + ++ ++++   G+GKTFT  K+ EA+    +  + M P+  L
Sbjct: 172 ----QKDALADVSKGLAAADRGKMIMAC-GTGKTFTSLKIAEAIAGKGKRVLFMVPSLAL 226

Query: 206 AAQLYSEFKN 215
            +Q   E+ N
Sbjct: 227 MSQTVREWTN 236


>gi|257893212|ref|ZP_05672865.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,408]
 gi|257829591|gb|EEV56198.1| ATP-dependent DNA helicase RecG [Enterococcus faecium 1,231,408]
          Length = 272

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 19/154 (12%)

Query: 551 PTGLVDPPVEIRSART-QVEDVYDEI--NLAAQQGLRILLTVLTKRMAEDLTEY------ 601
           P G +  P+E R  RT Q++ V D     LA    + ++  ++ +  A D+         
Sbjct: 27  PAGRI--PIETRWVRTPQLDSVLDWTRKELARGHQMYVICPLIEESEALDVKNAVEIYEK 84

Query: 602 ---LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
              L+     V  +H ++K  E+  I+   +  +  +LV   ++  G+++P   ++ I+D
Sbjct: 85  LRELFAPKYEVGLLHGKMKNQEKEVIMEAFKDNQMQILVSTTVIEVGVNVPNATVMLIMD 144

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVN-SKVILYAD 691
           AD+ G       L Q  GR  R  + S  IL A+
Sbjct: 145 ADRFGL----AQLHQLRGRVGRGSDASYCILVAN 174


>gi|205364353|gb|ACI04543.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Rattus norvegicus]
          Length = 614

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 402

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 403 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 438


>gi|170029482|ref|XP_001842621.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Culex
           quinquefasciatus]
 gi|167863205|gb|EDS26588.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Culex
           quinquefasciatus]
          Length = 815

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 34/149 (22%)

Query: 87  SEKQTREISEQTMTPSVQALARLIQSD-NPLLKNGKIWTPHRSWSINNHSKDITFFQMQT 145
           SEK+  E++E+          R+ + D N  +K GKI  P RSW  +   K++     + 
Sbjct: 354 SEKEVDEMTERDW--------RIFREDYNVTIKGGKIPNPIRSWKESGFPKEVLEIIDKV 405

Query: 146 DY-HPSGDQPAAIAQLLKGIHSREKVQLLLGV--TGSGKTFT--------------MAKV 188
            Y  P+  Q  AI     G+ +R+    ++G+  TGSGKT                + + 
Sbjct: 406 GYKEPTPIQRQAIPI---GLQNRD----IIGIAETGSGKTLAFLIPLLNWIQGLPKIERQ 458

Query: 189 IEAMQRP-AIVMAPNKILAAQLYSEFKNF 216
             A Q P AI++AP + LA Q+  E + F
Sbjct: 459 ETADQGPYAIILAPTRELAQQIEEETQKF 487


>gi|52141640|ref|YP_085196.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
 gi|51975109|gb|AAU16659.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
          Length = 682

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 498 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 557

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 558 GL----SQLHQLRGRVGRGSEQSYCLLIAD 583


>gi|21228807|ref|NP_634729.1| type I restriction-modification system restriction subunit
           [Methanosarcina mazei Go1]
 gi|20907326|gb|AAM32401.1| type I restriction-modification system restriction subunit
           [Methanosarcina mazei Go1]
          Length = 893

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 7/110 (6%)

Query: 131 INNHSKD--ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
           +N  S+D   TFF++  +      Q  A   + + I  R++  L+   TG+GKTFT+  +
Sbjct: 140 LNYDSEDRSTTFFEIPDNTRMRPYQREACDAIGRAIVDRKRTMLVAMATGTGKTFTIVNL 199

Query: 189 I-----EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           I       + +  + +   + LAAQ    F +F     +++  +Y  Y Q
Sbjct: 200 IYRLIKAGVAKRVLFLVDRRALAAQAVRAFSSFETEQGLKFDKTYEVYSQ 249


>gi|83816893|ref|NP_031866.2| probable ATP-dependent RNA helicase DDX5 [Mus musculus]
 gi|26354006|dbj|BAC40633.1| unnamed protein product [Mus musculus]
 gi|74141529|dbj|BAE38540.1| unnamed protein product [Mus musculus]
 gi|74177712|dbj|BAE38954.1| unnamed protein product [Mus musculus]
 gi|82568932|gb|AAI08370.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|120537322|gb|AAI29875.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|123243266|emb|CAM18566.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|127799027|gb|AAH62916.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|148702364|gb|EDL34311.1| mCG2872, isoform CRA_a [Mus musculus]
 gi|148702366|gb|EDL34313.1| mCG2872, isoform CRA_a [Mus musculus]
 gi|148702367|gb|EDL34314.1| mCG2872, isoform CRA_a [Mus musculus]
          Length = 615

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 343 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 402

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 403 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 438


>gi|332994271|gb|AEF04326.1| ATP-dependent RNA helicase SrmB [Alteromonas sp. SN2]
          Length = 414

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 5/106 (4%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +++  +Q    ++ V T+   + L +YL  ++I V ++  E+   +R+  +   + G+  
Sbjct: 237 VHILKEQATTTVVFVKTRERLQMLKDYLASQDIMVCWLQGEMPQDKRMAALTRFKSGEVP 296

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           VL+  ++   G+D+PE   V   D       R     +  IGR  R
Sbjct: 297 VLLATDVAARGIDVPEVSHVINFD-----MPRKADVYVHRIGRTGR 337


>gi|301029579|ref|ZP_07192657.1| transcription-repair coupling factor [Escherichia coli MS 196-1]
 gi|299877574|gb|EFI85785.1| transcription-repair coupling factor [Escherichia coli MS 196-1]
          Length = 1148

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 94/230 (40%), Gaps = 29/230 (12%)

Query: 171 QLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF---FPHNAVEYFV 226
           Q LLG +TG+     +A++ E    P +++AP+   A +L+ E   F      N  ++  
Sbjct: 16  QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA----TRSLLERNDCIVVSSVSCIY 282
             YD + P   +      I    S   Q+  M+         +L++R     V   S ++
Sbjct: 76  LPYDSFSPHQDI------ISSRLSTLYQLPTMQRGVLIVPVNTLMQR-----VCPHSFLH 124

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           G   V         +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 125 GHALV---------MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
            E + +R+  F ++I+ +  F   + + +  VE I +     + T +  +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAI 224


>gi|299142557|ref|ZP_07035688.1| ATP-dependent DNA helicase RecG [Prevotella oris C735]
 gi|298575992|gb|EFI47867.1| ATP-dependent DNA helicase RecG [Prevotella oris C735]
          Length = 700

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 14/143 (9%)

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
            R+  +H ++K  E+ E +R    G+  +LV   ++  G+++P   ++ ILDA + G   
Sbjct: 516 FRISKVHGKMKPAEKEEEMRRFVSGETQILVATTVIEVGVNVPNASVMVILDAQRFGL-- 573

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
             + L Q  GR  R       +    +  S +L+ +ET +R +   + N    I    +K
Sbjct: 574 --SQLHQLRGRVGRGAKQSYCI----LVTSYKLS-EETRKRIDIMCDTNDGFRIAEADLK 626

Query: 727 EKIMEVIDPILLEDAATTNISID 749
            +      P  LE    + I+ D
Sbjct: 627 LR-----GPGDLEGTQQSGIAFD 644


>gi|291406387|ref|XP_002719528.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 1
           [Oryctolagus cuniculus]
          Length = 535

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 264 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 323

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 324 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 359


>gi|301112795|ref|XP_002998168.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262112462|gb|EEY70514.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 823

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 2/110 (1%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G +I++ V  K+  + + +++     R   +H      +R E ++  R G  D+LV  ++
Sbjct: 661 GAKIIVFVNIKKECDSVAKFISSEGFRCTILHGGKTQDQREESLKMFREGYCDMLVATDV 720

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
              GLDIP+  +  +++ D    +++ +  I   GRA ++  +  +L  D
Sbjct: 721 AGRGLDIPD--VTHVVNFDLPSKIQNYSHRIGRTGRAGKDGVAISLLTDD 768


>gi|206976738|ref|ZP_03237642.1| ATP-dependent DNA helicase RecG [Bacillus cereus H3081.97]
 gi|229197966|ref|ZP_04324680.1| ATP-dependent DNA helicase recG [Bacillus cereus m1293]
 gi|206745048|gb|EDZ56451.1| ATP-dependent DNA helicase RecG [Bacillus cereus H3081.97]
 gi|228585445|gb|EEK43549.1| ATP-dependent DNA helicase recG [Bacillus cereus m1293]
          Length = 682

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 498 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 557

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 558 GL----SQLHQLRGRVGRGSEQSYCLLIAD 583


>gi|116074689|ref|ZP_01471950.1| putative DNA helicase [Synechococcus sp. RS9916]
 gi|116067911|gb|EAU73664.1| putative DNA helicase [Synechococcus sp. RS9916]
          Length = 844

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 22/188 (11%)

Query: 521 LRPTTIVVSATP--GSWELEQCQGIIVEQIIR-PTGLVDPPVEIR----SARTQVEDVYD 573
           L+P  + ++ATP   +  L     + V QI   P G    P++ R    S R Q  D+  
Sbjct: 565 LQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRT--PIQTRQISGSDRDQAYDLIR 622

Query: 574 EINLAAQQGLRILLTV-----LTKRMAEDLTEYLYER---NIRVRYMHSEVKTLERIEII 625
           E   A Q+   +L  V     +  R A D+   L E    +  V  +H  + + E+  +I
Sbjct: 623 EQVQAGQRAYVVLPLVEESEKMDLRSAVDVHRQLVEEVFPDCSVGLLHGRLNSAEKQAVI 682

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNS 684
           +    G   VLV   ++  G+D+PE  ++ I  AD+ G       L Q  GR  R    S
Sbjct: 683 QAFARGDCQVLVSTTVVEVGVDVPEASVMVIDHADRFGL----AQLHQLRGRVGRGAAAS 738

Query: 685 KVILYADT 692
             +L  D+
Sbjct: 739 HCLLVNDS 746


>gi|33152902|ref|NP_874255.1| ATP-dependent DNA helicase RecG [Haemophilus ducreyi 35000HP]
 gi|33149127|gb|AAP96644.1| ATP-dependent DNA helicase RecG [Haemophilus ducreyi 35000HP]
          Length = 697

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++R+  +H  +K  E+  I+   +    D+LV   ++  G+D+P   L+ I ++++ G  
Sbjct: 521 DLRIGLVHGRMKPQEKQTIMAAFKAATLDLLVATTVIEVGVDVPNASLMIIENSERLGL- 579

Query: 666 RSKTSLIQTIGRAARNVNSK--VILYADTITK 695
                L Q  GR  R   +   V++Y   + K
Sbjct: 580 ---AQLHQLRGRVGRGATASHCVLMYKPPLGK 608


>gi|226021|prf||1406327A growth regulated nuclear 68 protein
          Length = 594

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 323 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 382

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 383 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 418


>gi|330995839|ref|ZP_08319736.1| helicase protein [Paraprevotella xylaniphila YIT 11841]
 gi|329574569|gb|EGG56134.1| helicase protein [Paraprevotella xylaniphila YIT 11841]
          Length = 749

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 12/124 (9%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R  +E +Y  +   A  G + ++  ++   A +++ Y  +  +    + S+    ER  +
Sbjct: 194 RPSIERLYGSVRQYAD-GKKGIVYAISISHARNISGYYNQYGMNTVAIDSKTPANERKRL 252

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL---IQTIGRAARN 681
           +   R GK  VLV +++  EG D P+   + +         R   SL   +Q +GR  R 
Sbjct: 253 VESFRQGKIQVLVNVDIFSEGFDCPDVEFIQL--------ARPTLSLPKYLQQVGRGLRK 304

Query: 682 VNSK 685
              K
Sbjct: 305 TEGK 308


>gi|327307374|ref|XP_003238378.1| ATP-dependent RNA helicase DBP8 [Trichophyton rubrum CBS 118892]
 gi|326458634|gb|EGD84087.1| ATP-dependent RNA helicase DBP8 [Trichophyton rubrum CBS 118892]
          Length = 528

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 597 DLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           DL E +  R + RV  +HS +   ER+  +   R     +LV  ++   GLDIP  GLV 
Sbjct: 367 DLLERILRRLSHRVTSLHSLLPQSERVANLSRFRASAARLLVATDVAARGLDIPSVGLVI 426

Query: 656 ILDADKEGFLRSKTSLIQTIGRAAR 680
             D       R+    I  +GR AR
Sbjct: 427 NYDVP-----RNPDDYIHRVGRTAR 446


>gi|310824350|ref|YP_003956708.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|309397422|gb|ADO74881.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 579

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++L A+  L +L+   T+  AE + E L     +   +H++    +R + +   R G++ 
Sbjct: 232 LSLLAKDQLSVLVFTRTRERAEKVQEVLKRAGHKTAAIHADRTQGQRRQALEGFRRGQYR 291

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            LV  ++   GLD+ + G V   D        +    +  IGR AR   S
Sbjct: 292 CLVATDIASRGLDVEDIGHVINFD-----LPHAPEDYVHRIGRTARAGAS 336


>gi|242787406|ref|XP_002481000.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500]
 gi|218721147|gb|EED20566.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500]
          Length = 543

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+   TKR+A+D+T +L +       +H + +  ER  ++++ + GK  ++V  ++  
Sbjct: 365 KCLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLQEFKNGKSPIMVATDVAS 424

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+ +   V   D     +  +    +  IGR  R
Sbjct: 425 RGIDVRDITHVINYD-----YPNNSEDYVHRIGRTGR 456


>gi|217961275|ref|YP_002339843.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH187]
 gi|229140501|ref|ZP_04269056.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST26]
 gi|217065342|gb|ACJ79592.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH187]
 gi|228643062|gb|EEK99338.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST26]
          Length = 682

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 498 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 557

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 558 GL----SQLHQLRGRVGRGSEQSYCLLIAD 583


>gi|166154120|ref|YP_001654238.1| primosome assembly protein PriA [Chlamydia trachomatis 434/Bu]
 gi|301335358|ref|ZP_07223602.1| primosome assembly protein PriA [Chlamydia trachomatis L2tet1]
 gi|165930108|emb|CAP03591.1| primosomal protein N' [Chlamydia trachomatis 434/Bu]
          Length = 753

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 36/159 (22%)

Query: 172 LLLGVTGSGKTFTMAKVI---EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           LL GVTGSGKT    +VI    A+ +  I++ P   L  Q  S FK    H   E  V +
Sbjct: 238 LLFGVTGSGKTEVYLQVIRKARALGKSVILLVPEVALTIQTLSFFKM---HFGSEVGVLH 294

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           Y     E    RT T+               H A+R L+     I++   S I+    ++
Sbjct: 295 YKLSDSE----RTQTW---------------HKASRGLIN----IIIGPRSAIF--CPIQ 329

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
           +   +IV  +   + +Q +L        Y+ +D+ ++RG
Sbjct: 330 NLGLIIVDEEHDSAYKQSDL-----PPFYQARDVAVMRG 363


>gi|148679535|gb|EDL11482.1| mCG133615, isoform CRA_b [Mus musculus]
          Length = 487

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++Y  I +A     + ++   T++ A  L   L +   +V  +  E+   +R  +I   R
Sbjct: 346 NLYGAITIA-----QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR 400

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            GK  VLV  N+   G+D+ +  +V   D   DK+G   ++T L   IGR  R
Sbjct: 401 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYL-HRIGRTGR 452


>gi|146282996|ref|YP_001173149.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri
           A1501]
 gi|145571201|gb|ABP80307.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri
           A1501]
          Length = 1148

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 33/131 (25%)

Query: 605 RNIRVRYMHSEVKTLERI--------------------------EIIRDLRLGKFDVLVG 638
           R  +V Y+H++VKT+E+                           +++ D    +F+VLV 
Sbjct: 807 RGGQVYYLHNDVKTIEKCAADLQALVPEARIAIGHGQMRERDLEQVMSDFYHKRFNVLVA 866

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + I  ADK G       L Q  GR  R+ +     YA  +T   +
Sbjct: 867 STIIETGIDVPSANTIIIERADKFGL----AQLHQLRGRVGRSHHQA---YAYLLTPPRK 919

Query: 699 LAIDETTRRRE 709
              D+  +R E
Sbjct: 920 AMTDDAQKRLE 930


>gi|118479077|ref|YP_896228.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis str. Al
           Hakam]
 gi|301055346|ref|YP_003793557.1| ATP-dependent DNA helicase [Bacillus anthracis CI]
 gi|118418302|gb|ABK86721.1| ATP-dependent DNA helicase RecG [Bacillus thuringiensis str. Al
           Hakam]
 gi|300377515|gb|ADK06419.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 685

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 501 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 560

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 561 GL----SQLHQLRGRVGRGSEQSYCLLIAD 586


>gi|115373138|ref|ZP_01460440.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
 gi|115369894|gb|EAU68827.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
          Length = 606

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++L A+  L +L+   T+  AE + E L     +   +H++    +R + +   R G++ 
Sbjct: 259 LSLLAKDQLSVLVFTRTRERAEKVQEVLKRAGHKTAAIHADRTQGQRRQALEGFRRGQYR 318

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            LV  ++   GLD+ + G V   D        +    +  IGR AR   S
Sbjct: 319 CLVATDIASRGLDVEDIGHVINFD-----LPHAPEDYVHRIGRTARAGAS 363


>gi|30263858|ref|NP_846235.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Ames]
 gi|47778232|ref|YP_022668.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186705|ref|YP_029957.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Sterne]
 gi|65321183|ref|ZP_00394142.1| COG1200: RecG-like helicase [Bacillus anthracis str. A2012]
 gi|165873284|ref|ZP_02217892.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0488]
 gi|167636663|ref|ZP_02394953.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0442]
 gi|167642024|ref|ZP_02400255.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0193]
 gi|170689646|ref|ZP_02880827.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0465]
 gi|170709348|ref|ZP_02899763.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0389]
 gi|177655967|ref|ZP_02937119.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0174]
 gi|190566221|ref|ZP_03019140.1| ATP-dependent DNA helicase RecG [Bacillus anthracis Tsiankovskii-I]
 gi|196035896|ref|ZP_03103298.1| ATP-dependent DNA helicase RecG [Bacillus cereus W]
 gi|196047426|ref|ZP_03114638.1| ATP-dependent DNA helicase RecG [Bacillus cereus 03BB108]
 gi|218904985|ref|YP_002452819.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH820]
 gi|225865836|ref|YP_002751214.1| ATP-dependent DNA helicase RecG [Bacillus cereus 03BB102]
 gi|227813237|ref|YP_002813246.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. CDC 684]
 gi|228916492|ref|ZP_04080058.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928903|ref|ZP_04091935.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935169|ref|ZP_04097996.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947574|ref|ZP_04109864.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228986998|ref|ZP_04147124.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229092898|ref|ZP_04224032.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-42]
 gi|229123369|ref|ZP_04252573.1| ATP-dependent DNA helicase recG [Bacillus cereus 95/8201]
 gi|229157431|ref|ZP_04285509.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 4342]
 gi|229186095|ref|ZP_04313264.1| ATP-dependent DNA helicase recG [Bacillus cereus BGSC 6E1]
 gi|229603604|ref|YP_002868092.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0248]
 gi|254683437|ref|ZP_05147297.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721386|ref|ZP_05183175.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A1055]
 gi|254735893|ref|ZP_05193599.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Western
           North America USA6153]
 gi|30258502|gb|AAP27721.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Ames]
 gi|47551937|gb|AAT35402.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180632|gb|AAT56008.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Sterne]
 gi|164710969|gb|EDR16538.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0488]
 gi|167510023|gb|EDR85438.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0193]
 gi|167527914|gb|EDR90730.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0442]
 gi|170125743|gb|EDS94655.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0389]
 gi|170666391|gb|EDT17173.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0465]
 gi|172079911|gb|EDT65018.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0174]
 gi|190563140|gb|EDV17106.1| ATP-dependent DNA helicase RecG [Bacillus anthracis Tsiankovskii-I]
 gi|195991545|gb|EDX55511.1| ATP-dependent DNA helicase RecG [Bacillus cereus W]
 gi|196021734|gb|EDX60429.1| ATP-dependent DNA helicase RecG [Bacillus cereus 03BB108]
 gi|218539493|gb|ACK91891.1| ATP-dependent DNA helicase RecG [Bacillus cereus AH820]
 gi|225787117|gb|ACO27334.1| ATP-dependent DNA helicase RecG [Bacillus cereus 03BB102]
 gi|227004793|gb|ACP14536.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. CDC 684]
 gi|228597271|gb|EEK54922.1| ATP-dependent DNA helicase recG [Bacillus cereus BGSC 6E1]
 gi|228626158|gb|EEK82907.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 4342]
 gi|228660145|gb|EEL15781.1| ATP-dependent DNA helicase recG [Bacillus cereus 95/8201]
 gi|228690520|gb|EEL44303.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-42]
 gi|228772776|gb|EEM21216.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228812094|gb|EEM58425.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228824534|gb|EEM70339.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830710|gb|EEM76315.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843071|gb|EEM88153.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268012|gb|ACQ49649.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. A0248]
          Length = 682

 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 498 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 557

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 558 GL----SQLHQLRGRVGRGSEQSYCLLIAD 583


>gi|291460142|ref|ZP_06599532.1| DNA/RNA helicase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417483|gb|EFE91202.1| DNA/RNA helicase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 535

 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 608 RVRYMHSEVKTL--ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           R+ +  +EV     +R EI++D   GK++VL    LL EG D P    V IL   K   +
Sbjct: 256 RIGFHAAEVNGTSDDREEILKDFDEGKYNVLCNSMLLTEGWDCPSVDCVIILRPTK---V 312

Query: 666 RSKTSLIQTIGRAAR 680
           RS  S  Q +GR  R
Sbjct: 313 RSLYS--QMVGRGTR 325


>gi|271968319|ref|YP_003342515.1| ATP-dependent DNA helicase RecQ [Streptosporangium roseum DSM
           43021]
 gi|270511494|gb|ACZ89772.1| ATP-dependent DNA helicase RecQ [Streptosporangium roseum DSM
           43021]
          Length = 689

 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++  LT   A+++  YL E+   V     + +  ER+   + L   K   LV  + L  G
Sbjct: 243 IIYTLTVAAAQEIAAYLREQGHEVAAYSGQTEQAERLAAEQALLDNKIKALVATSALGMG 302

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVIL 688
            D P+ G V  + A +     S  +  Q +GRA R V  ++VIL
Sbjct: 303 YDKPDLGFVVHVGAPQ-----SPVAYYQQVGRAGRGVERAEVIL 341


>gi|241668341|ref|ZP_04755919.1| transcription-repair coupling factor [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876874|ref|ZP_05249584.1| transcription-repair coupling factor [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842895|gb|EET21309.1| transcription-repair coupling factor [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 1139

 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 15/111 (13%)

Query: 297 LKIGDSVE---QKELLS----SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           LKIGDS++   QK LL+    +LV   ++       +G F + G  I+IFP     VA+R
Sbjct: 128 LKIGDSLDITKQKVLLTEAGYTLVNNVFE-------KGEFSIRGSIIDIFPVG-SKVAFR 179

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
           + +F ++++ I E    T +  + +++I I  +   +      + A++ +K
Sbjct: 180 IDLFDDEVDTIKELDTETQRSGKEIKSINIMPSHEMIYNSQNTSLALEKLK 230


>gi|229013038|ref|ZP_04170203.1| ATP-dependent DNA helicase recG [Bacillus mycoides DSM 2048]
 gi|228748292|gb|EEL98152.1| ATP-dependent DNA helicase recG [Bacillus mycoides DSM 2048]
          Length = 682

 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 498 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 557

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 558 GL----SQLHQLRGRVGRGSEQSYCLLIAD 583


>gi|229134663|ref|ZP_04263472.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST196]
 gi|229168594|ref|ZP_04296317.1| ATP-dependent DNA helicase recG [Bacillus cereus AH621]
 gi|228615000|gb|EEK72102.1| ATP-dependent DNA helicase recG [Bacillus cereus AH621]
 gi|228648709|gb|EEL04735.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST196]
          Length = 682

 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 498 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 557

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 558 GL----SQLHQLRGRVGRGSEQSYCLLIAD 583


>gi|242019954|ref|XP_002430423.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212515553|gb|EEB17685.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 518

 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L ++   V+ + + +   +R  I+++   GK D+L+  + L  G+DIP    V   D  K
Sbjct: 351 LCKKKYTVQQLSANIVQSKRNRILQNFENGKVDILISSDALARGIDIPNVKYVVSYDCPK 410

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
             F+++    I   GRA +  +S   L +  +T
Sbjct: 411 --FVKTYVHRIGRTGRAGKEGHSLAFLTSKEVT 441


>gi|158294110|ref|XP_315400.4| AGAP005391-PA [Anopheles gambiae str. PEST]
 gi|157015412|gb|EAA11295.4| AGAP005391-PA [Anopheles gambiae str. PEST]
          Length = 1130

 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 10/113 (8%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           + +++ +IN A     + ++   T   AE    YL +       ++S ++   R++ I D
Sbjct: 260 LNEIFQQINFA-----QCVVFANTISKAETYCTYLKKAGWPAEVINSGMEQRFRLKAIED 314

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            R  +  VL+  NL+  G+D+    LV   D  K+       + +  IGRA R
Sbjct: 315 FRSFRARVLIATNLIARGIDVENVNLVINADVPKD-----NATYLHRIGRAGR 362


>gi|327401630|ref|YP_004342469.1| helicase domain-containing protein [Archaeoglobus veneficus SNP6]
 gi|327317138|gb|AEA47754.1| helicase domain protein [Archaeoglobus veneficus SNP6]
          Length = 746

 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 13/113 (11%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER--------IEIIRDLRLGKFDV 635
           RI++    +  AE + E L +  I V     + K  E+        +E +   R G+  V
Sbjct: 365 RIIVFTNFRDTAEVIVEELKKEGIPVSRFVGQAKRFEKKGMSQKEQVETLERFRSGEIKV 424

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           LV  ++  EGLDIP   LV   +A     + S+   IQ  GR  R    ++++
Sbjct: 425 LVATSVGEEGLDIPSTDLVVFYEA-----VPSEIRAIQRKGRTGRAREGRIVV 472


>gi|320527000|ref|ZP_08028189.1| putative ATP-dependent RNA helicase RhlE [Solobacterium moorei
           F0204]
 gi|320132585|gb|EFW25126.1| putative ATP-dependent RNA helicase RhlE [Solobacterium moorei
           F0204]
          Length = 459

 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK  A+ LT+ L E  I+V  +H +    +R   ++  R  + DVLV  ++   G+DI  
Sbjct: 249 TKIGADRLTKKLIEDGIKVLTIHGDKTQGQRQNALQRFRTNQVDVLVATDVAARGIDI-- 306

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+  + + D         S I  IGRA R
Sbjct: 307 SGISHVFNYD---LPEEDESYIHRIGRAGR 333


>gi|260577582|ref|ZP_05845521.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
           43734]
 gi|258604306|gb|EEW17544.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
           43734]
          Length = 707

 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 4/129 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R      ++ ++    R   +  L+ G+ D+LV  ++   
Sbjct: 316 MIMFVRTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVATDVAAR 375

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+    +  + + D      S    I   GRA R    + IL+     + +  +I+  
Sbjct: 376 GLDVDR--ITHVFNYDIPHDTESYVHRIGRTGRAGR--KGRAILFVTPRERRLLKSIERA 431

Query: 705 TRRREKQLE 713
           T+ R  ++E
Sbjct: 432 TKSRLNEIE 440


>gi|229530065|ref|ZP_04419455.1| helicase [Vibrio cholerae 12129(1)]
 gi|229333839|gb|EEN99325.1| helicase [Vibrio cholerae 12129(1)]
          Length = 1046

 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 18/123 (14%)

Query: 572 YDEINLAAQQ------GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +D+I L+ Q+       ++ L   ++K  A+ +T+ L  + I+   + S+  + +R +  
Sbjct: 542 FDKILLSMQEIITDISKMKALAFCVSKEHAQYMTQQLLLKGIKADVLTSD-NSHDRQQKQ 600

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR---SKTSLIQTIGRAARNV 682
           + +R G  +VL  +++  EG+DIPE         D   FLR   S T  +Q +GR  R  
Sbjct: 601 QAIRSGSINVLCVVDIFNEGVDIPE--------VDTLLFLRPTESLTIFLQQLGRGLRLA 652

Query: 683 NSK 685
             K
Sbjct: 653 EGK 655


>gi|228909680|ref|ZP_04073503.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis IBL 200]
 gi|228849969|gb|EEM94800.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis IBL 200]
          Length = 682

 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 498 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 557

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 558 GL----SQLHQLRGRVGRGSEQSYCLLIAD 583


>gi|212542881|ref|XP_002151595.1| DEAD/DEAH box RNA helicase [Penicillium marneffei ATCC 18224]
 gi|210066502|gb|EEA20595.1| DEAD/DEAH box RNA helicase [Penicillium marneffei ATCC 18224]
          Length = 1207

 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 61/159 (38%), Gaps = 17/159 (10%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A +  R L+ V  +  A+ L   L  +      +H     ++R   I D + G F VL+ 
Sbjct: 824 ANEDARTLIFVDRQEAADSLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIA 883

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +  LV   DA     L          GRA     +   L  D    S+ 
Sbjct: 884 TSVAARGLDVKQLKLVVNYDA--PNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVD 941

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           +A         K L+ +       Q+V E + +++D  L
Sbjct: 942 IA---------KALKQSG------QAVPEPVQKLVDSFL 965


>gi|157413185|ref|YP_001484051.1| ATP-dependent DNA helicase RecG [Prochlorococcus marinus str. MIT
           9215]
 gi|157387760|gb|ABV50465.1| ATP-dependent DNA helicase recG [Prochlorococcus marinus str. MIT
           9215]
          Length = 817

 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 595 AEDLTEYLYER---NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           A+ + +YL E    N +V  +H ++ + E+ E+I      + ++LV   ++  G+D+P  
Sbjct: 622 AKKIFKYLSEEVFFNKKVGLLHGKLNSQEKNEVINSFIENEINILVSTTVIEVGIDVPNA 681

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            ++ I ++D+ G     + L Q  GR  R
Sbjct: 682 TIMIIYNSDRFGL----SQLHQLRGRVGR 706


>gi|317039132|gb|ADU87114.1| melanoma differentiation-associated protein 5 [Paralichthys
           olivaceus]
 gi|321265893|gb|ADW78349.1| melanoma differentiation-associated protein 5 [Paralichthys
           olivaceus]
          Length = 988

 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 19/116 (16%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERN------IRVRYM-----HSEVKTL---ERI 622
            ++++  R ++   T+R A  L+ ++ E +      ++  Y+      S VK +   E+ 
Sbjct: 668 FSSREEARGIIFTKTRRSAIALSHWIQENSKFADIGVKASYVIGGGDQSVVKPMTPAEQK 727

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +++++   G  ++L+   +  EGLDIP C  V      + G + ++ S+IQ  GR 
Sbjct: 728 DVLKNFHNGDVNLLIATTVAEEGLDIPACNFVI-----RYGLVTNEISMIQAEGRG 778


>gi|321314473|ref|YP_004206760.1| putative ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|320020747|gb|ADV95733.1| putative ATP-dependent RNA helicase [Bacillus subtilis BSn5]
          Length = 376

 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 7/87 (8%)

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
            E L   ++ +  +HSE K +ER +II     G+F +L+  ++   GLDI     V   D
Sbjct: 258 AEKLAYHHVELGVLHSEAKKMERAKIISAFEDGEFPLLLATDIAARGLDIENLPYVIHAD 317

Query: 659 -ADKEGFL-RSKTSLIQTIGRAARNVN 683
             D++G++ RS  +     GRA +  N
Sbjct: 318 IPDEDGYVHRSGRT-----GRAGKEGN 339


>gi|312376439|gb|EFR23520.1| hypothetical protein AND_12717 [Anopheles darlingi]
          Length = 696

 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 5/108 (4%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + A++  + ++ + TK+  +D+T  +       R +H +    ER   ++  R G+  +L
Sbjct: 338 IMAEKECKTIIFIETKKRVDDITRKVKRDGWPARCIHGDKSQNERDSTLKSFRSGRTPIL 397

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +  ++   GLD+ +   V   D     F  +    I  IGR  R  N+
Sbjct: 398 IATDVAARGLDVDDVKFVINFD-----FPTTSEDYIHRIGRTGRCDNT 440


>gi|291406389|ref|XP_002719529.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2
           [Oryctolagus cuniculus]
          Length = 544

 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 273 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 332

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 333 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 368


>gi|296121173|ref|YP_003628951.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296013513|gb|ADG66752.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 703

 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 595 AEDLTEYLYERNI---RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           AEDL + L  + +   RV  +H  +    R E +R  R  + DVLV  +++  G+D+P  
Sbjct: 507 AEDLYQRLQSKELAQFRVGLLHGRMSPELRAETMRKFREHELDVLVATSVIEVGVDVPSA 566

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + +  A++ G     + L Q  GR  R 
Sbjct: 567 TQMIVYHAEQFGL----SQLHQFRGRVGRG 592


>gi|229104417|ref|ZP_04235086.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-28]
 gi|228679115|gb|EEL33323.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock3-28]
          Length = 682

 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 498 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 557

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 558 GL----SQLHQLRGRVGRGSEQSYCLLIAD 583


>gi|256851698|ref|ZP_05557086.1| phage DEAD box family helicase [Lactobacillus jensenii 27-2-CHN]
 gi|260661584|ref|ZP_05862496.1| phage DEAD box family helicase [Lactobacillus jensenii 115-3-CHN]
 gi|282934218|ref|ZP_06339495.1| phage DEAD-box family helicase [Lactobacillus jensenii 208-1]
 gi|297205316|ref|ZP_06922712.1| helicase [Lactobacillus jensenii JV-V16]
 gi|256615656|gb|EEU20845.1| phage DEAD box family helicase [Lactobacillus jensenii 27-2-CHN]
 gi|260547641|gb|EEX23619.1| phage DEAD box family helicase [Lactobacillus jensenii 115-3-CHN]
 gi|281301692|gb|EFA93959.1| phage DEAD-box family helicase [Lactobacillus jensenii 208-1]
 gi|297149894|gb|EFH30191.1| helicase [Lactobacillus jensenii JV-V16]
          Length = 936

 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE--DLTEYLYERNIRVRYMHSEVKTLE 620
           +A  +V+ +  EI+     G +    V   R AE  +L      R  +   + ++    +
Sbjct: 408 TAEKRVDYLLKEIDYYGYCGKKAHGLVFCSRQAEAKELALEFTNRGHKAISLTNQNNETD 467

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R + ++DL  GK + ++ ++L  EG+DIP    + +L        +S    IQ +GR  R
Sbjct: 468 RQKAVKDLEAGKIEYIITVDLFNEGIDIPCLNQIIMLRNT-----QSSIVFIQQLGRGLR 522

Query: 681 NVNSK 685
               K
Sbjct: 523 KYPGK 527


>gi|224026055|ref|ZP_03644421.1| hypothetical protein BACCOPRO_02808 [Bacteroides coprophilus DSM
           18228]
 gi|224019291|gb|EEF77289.1| hypothetical protein BACCOPRO_02808 [Bacteroides coprophilus DSM
           18228]
          Length = 269

 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 99/218 (45%), Gaps = 22/218 (10%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207
           HP+ +    +A L+     R     L GV  S  +   + V+++  R  + +  +     
Sbjct: 13  HPNAE---GLASLMNNPEIR--TIFLEGVHASCTSLFASGVVKSADRVHLFILNDL---- 63

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
               E   +F H+ V+     +  + P +Y  R   Y +K+++     + +  +   S L
Sbjct: 64  ----EEAGYFYHDLVQVDGDEHILFFPSSY-RRAIKYGQKDAA-----NEILRTEVLSRL 113

Query: 268 ERNDCIVVSSV--SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           E+++ +VV +   +    + S    +   ++L++G  VE +E+LS+L +  ++  D    
Sbjct: 114 EKDEPLVVVTYPEALAEKVVSRNELTDRTMKLQVGQHVETEEILSTLTEYGFEHVDYVYE 173

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            G F + G  ++++ S   +  +R+  FG++I+ I  F
Sbjct: 174 PGQFAMRGSILDVY-SFASEYPYRIDFFGDEIDSIRTF 210


>gi|194387478|dbj|BAG60103.1| unnamed protein product [Homo sapiens]
          Length = 603

 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 332 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 391

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 392 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 427


>gi|229586932|ref|YP_002845433.1| ATP-dependent DNA helicase RecG [Rickettsia africae ESF-5]
 gi|228021982|gb|ACP53690.1| ATP-dependent DNA helicase RecG [Rickettsia africae ESF-5]
          Length = 713

 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +H ++K  ++ +I++  + G+  +LV   ++  G+DIPE  L+ I +A++ G       L
Sbjct: 543 IHGKMKNEQKDQIMKQFKEGEIKILVATTVIEVGIDIPEATLIIIENAEQFGL----AQL 598

Query: 672 IQTIGRAAR 680
            Q  GR  R
Sbjct: 599 HQLRGRVGR 607


>gi|90076664|dbj|BAE88012.1| unnamed protein product [Macaca fascicularis]
          Length = 423

 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +   A++L   L    I V  +H+E    +R   +   R G+  VL+   LL  
Sbjct: 239 VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGRIWVLICTALLAR 298

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILY 689
           G+D     LV   D     F  S    I  IGR  R  N  K I +
Sbjct: 299 GIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITF 339


>gi|221133986|ref|ZP_03560291.1| ATP-dependent RNA helicase [Glaciecola sp. HTCC2999]
          Length = 622

 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 11/155 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK    +L + L  R   V  ++ ++    R   +  L+ G  D+L+  +++  
Sbjct: 249 VIVFVRTKTATLELADKLSARGYDVEPLNGDIPQKSRERTVERLKSGSIDILIATDVVAR 308

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R  ++  IL+     K +   I+
Sbjct: 309 GLDVERVSHVINFDIPYDTESYVHR----IGRTGRAGRQGDA--ILFISHREKRLLFQIE 362

Query: 703 ETTRRREKQLEHNKKHNINPQSV---KEKIMEVID 734
           +TT++  +Q+       +N   +   KE ++E I+
Sbjct: 363 KTTKQSIEQMPIPSISEMNESRLVRFKESVVEAIE 397


>gi|67458656|ref|YP_246280.1| ATP-dependent RNA helicase RhlE [Rickettsia felis URRWXCal2]
 gi|67004189|gb|AAY61115.1| ATP-dependent RNA helicase RhlE [Rickettsia felis URRWXCal2]
          Length = 353

 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
            EI+     V D      L  Q G R   +++ V TKR A+ L + L   N +   +H +
Sbjct: 151 AEIKQESMHVSDKEKFSELTKQLGNREGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGD 210

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +   +R  +I   R     ++V  ++   GLDIP  
Sbjct: 211 LSQRQRERVILSFRKSNHRIMVATDVAARGLDIPHT 246


>gi|34498347|ref|NP_902562.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34104201|gb|AAQ60560.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 439

 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK  +E+L + L ++      +H ++    R   + DLR G+  VLV  ++   G+D+P 
Sbjct: 254 TKAYSEELADKLSDQGYSAACLHGDMPQSWRNRTLNDLRRGRIKVLVATDVAARGIDVPT 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              V   D  K+         +  IGR  R
Sbjct: 314 ITHVVNFDLPKQ-----AEDYVHRIGRTGR 338


>gi|254284072|ref|ZP_04959040.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
 gi|219680275|gb|EED36624.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
          Length = 598

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 8/130 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V T+   ++L + L  R      ++ ++   +R + +   + G+ D+LV  ++   
Sbjct: 250 VIIFVRTRIATQELADKLAARGFATAALNGDIAQNQREKTVDSFKRGQLDLLVATDVAAR 309

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD+     V   D   D E ++      I   GRA R    + IL+A    + +  AI+
Sbjct: 310 GLDVDRVSHVINYDIPNDPEAYIHR----IGRTGRAGR--TGEAILFAAKRERRLLHAIE 363

Query: 703 ETTRRREKQL 712
            TT ++  Q+
Sbjct: 364 RTTGQKIDQM 373


>gi|190702284|gb|ACE75181.1| ATP-dependent RNA helicase [Glyptapanteles flavicoxis]
          Length = 796

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 30/146 (20%)

Query: 92  REISEQTMTPSVQALARLIQSD-NPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH-- 148
           R  SE+ +    +   R+ + D N  +K G+I  P RSW  +   K+I     +  Y   
Sbjct: 332 RHWSEKALNEMTERDWRIFREDYNITIKGGRIPDPIRSWKESGFPKEILDIIDKVGYKDL 391

Query: 149 -PSGDQPAAIAQLLKGIHSREKVQLLLGV--TGSGKTFT--------------MAKVIEA 191
            P   Q   I     G+ +R+    ++GV  TGSGKT                + ++ EA
Sbjct: 392 TPIQRQAIPI-----GLQNRD----IIGVAETGSGKTLAFLIPLLLWITSLPKIERLEEA 442

Query: 192 MQRP-AIVMAPNKILAAQLYSEFKNF 216
            Q P +I++AP + LA Q+  E   F
Sbjct: 443 DQGPYSIILAPTRELAQQIEEETNKF 468


>gi|193890969|gb|ACF28638.1| translation initiation factor 4A [Amphidinium carterae]
          Length = 331

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +R  + L   L +R+  V  +H+++   ER  ++++ R G   VL+  +LL  G+D+ + 
Sbjct: 223 RRKVDSLAHELSKRDFAVSIIHADLDQEERNLVMKEFRNGATRVLISTDLLARGIDVQQV 282

Query: 652 GLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            LV   D   D E +L         IGR+ R
Sbjct: 283 SLVINYDMPMDMENYL-------HRIGRSGR 306


>gi|172355578|ref|NP_001116486.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Xenopus (Silurana)
           tropicalis]
 gi|171846831|gb|AAI61533.1| ddx52 protein [Xenopus (Silurana) tropicalis]
          Length = 416

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  E   E +YE  I V  +H+E    +R  +I+  R GK  VL+   LL  G+D     
Sbjct: 232 RAKELFHELIYE-GINVDVIHAERTQQQRDNVIQSFREGKIWVLICTALLARGIDFKGVN 290

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +V   D     F  S    I  IGR  R
Sbjct: 291 MVINYD-----FPTSAVEYIHRIGRTGR 313


>gi|166154995|ref|YP_001653250.1| primosome assembly protein PriA [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|165930983|emb|CAP06545.1| primosomal protein N' [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 753

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 36/159 (22%)

Query: 172 LLLGVTGSGKTFTMAKVI---EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           LL GVTGSGKT    +VI    A+ +  I++ P   L  Q  S FK    H   E  V +
Sbjct: 238 LLFGVTGSGKTEVYLQVIRKARALGKSVILLVPEVALTIQTLSFFKM---HFGSEVGVLH 294

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           Y     E    RT T+               H A+R L+     I++   S I+    ++
Sbjct: 295 YKLSDSE----RTQTW---------------HKASRGLIN----IIIGPRSAIF--CPIQ 329

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
           +   +IV  +   + +Q +L        Y+ +D+ ++RG
Sbjct: 330 NLGLIIVDEEHDSAYKQSDL-----PPFYQARDVAVMRG 363


>gi|145632667|ref|ZP_01788401.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
 gi|229846508|ref|ZP_04466616.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 7P49H1]
 gi|144986862|gb|EDJ93414.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
 gi|229810601|gb|EEP46319.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 7P49H1]
          Length = 439

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +  A +++E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++  
Sbjct: 250 RGIVFVRRREDAREVSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D        S  + +  IGR AR
Sbjct: 310 RGIDIDDVSHVMNFD-----LPYSADTYLHRIGRTAR 341


>gi|114794734|pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
          Length = 417

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK
Sbjct: 268 DLLNATGKDSL-TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 326

Query: 633 FDVLVGINLLREGLDIPECGLVAILD--ADKEGFLR--SKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDI     V   D  +D E ++    +T  +  +G A    N + I 
Sbjct: 327 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI- 385

Query: 689 YADTITKSI 697
               ITK +
Sbjct: 386 ---NITKDL 391


>gi|110668117|ref|YP_657928.1| DNA repair helicase RAD25 [Haloquadratum walsbyi DSM 16790]
 gi|109625864|emb|CAJ52304.1| DNA repair helicase RAD25 [Haloquadratum walsbyi DSM 16790]
          Length = 469

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 15/120 (12%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLT-------EYLYE--RNIRVRYMHSEVKTLERIEII 625
           I   A++ L  L T+L KR  +D T       E+ Y+  +   V  +  + +T ER EI+
Sbjct: 324 IARTAEKKLDTLDTLL-KRHYDDRTIIFTANNEFAYDISQEFVVPCITHQTETDERTEIL 382

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R G++ +L    +L EG+D+P   +  IL         SK    Q +GR  R  + +
Sbjct: 383 ERFRTGEYSMLATSQVLDEGIDVPAANVGIILSGSA-----SKRQYAQRLGRILRPTDDR 437


>gi|94989151|ref|YP_597252.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS9429]
 gi|94993043|ref|YP_601142.1| ATP-dependent DNA helicase RecG [Streptococcus pyogenes MGAS2096]
 gi|94542659|gb|ABF32708.1| ATP-dependent DNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94546551|gb|ABF36598.1| ATP-dependent DNA helicase recG [Streptococcus pyogenes MGAS2096]
          Length = 671

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L+ Y +E   +V  +H  +K  E+   ++D +  K  +LV   ++  G+++P   ++ I
Sbjct: 487 ELSTY-FEGIAKVALVHGRMKNDEKDARMQDFKDKKSHILVSTTVIEVGVNVPNATIMII 545

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
           +DAD+ G     + L Q  GR  R    S  +L A+  T S
Sbjct: 546 MDADRFGL----SQLHQLRGRVGRGYKQSYAVLVANPKTDS 582


>gi|12850261|dbj|BAB28651.1| unnamed protein product [Mus musculus]
          Length = 304

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 32  KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 91

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            GLD+ +   V   D     +  S    I  IGR AR
Sbjct: 92  RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTAR 123


>gi|59712046|ref|YP_204822.1| DEAD-box ATP dependent DNA helicase [Vibrio fischeri ES114]
 gi|59480147|gb|AAW85934.1| ATP-dependent RNA helicase, DEAD box family [Vibrio fischeri ES114]
          Length = 421

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V  K     L + L +R I     H +     R  ++   + G+ DVL+  ++   G
Sbjct: 259 LIFVNAKNACNHLADKLAKRGIAAEVFHGDKGQGARTRVLEAFKAGEIDVLIATDIAARG 318

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDI +  +V   D       RS    +  IGR+ R
Sbjct: 319 LDIEKLPVVINFD-----LPRSPADYMHRIGRSGR 348


>gi|68249023|ref|YP_248135.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 86-028NP]
 gi|68057222|gb|AAX87475.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 86-028NP]
          Length = 439

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +  A +++E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++  
Sbjct: 250 RGIVFVRRREDAREVSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+DI +   V   D        S  + +  IGR AR
Sbjct: 310 RGIDIDDVSHVMNFD-----LPYSADTYLHRIGRTAR 341


>gi|58259181|ref|XP_567003.1| Pre-mRNA splicing factor RNA helicase PRP28 [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|134107275|ref|XP_777522.1| hypothetical protein CNBA6450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687426|sp|Q5KNF8|PRP28_CRYNE RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|50260216|gb|EAL22875.1| hypothetical protein CNBA6450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223140|gb|AAW41184.1| Pre-mRNA splicing factor RNA helicase PRP28, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 738

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 16/155 (10%)

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV--DPPVEIRSARTQV 568
           +P +  EW   R TT+  +  P + E      +  + +I+P  +V  +    + +   +V
Sbjct: 507 QPTKEGEWQGWRVTTLFSATMPPAVER-----LARKYLIKPATVVIGNAGEAVDTVEQRV 561

Query: 569 EDVYDE-------INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E V+ +       I +    GL   I++ V  K+ A+ + +Y+ +  +    +HS     
Sbjct: 562 EFVHGDEKKKARLIEILRTIGLPPPIIVFVNQKKTADMVVKYVQQAGMSGVTLHSGKSQE 621

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           +R   ++ LR G+  VLV  +L   G+D+P+  LV
Sbjct: 622 QREAALQALRDGEISVLVATDLAGRGIDVPDVSLV 656


>gi|296201834|ref|XP_002748196.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 3
           [Callithrix jacchus]
          Length = 544

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 273 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 332

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 333 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 368


>gi|260435719|ref|ZP_05789689.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 8109]
 gi|260413593|gb|EEX06889.1| ATP-dependent DNA helicase RecG [Synechococcus sp. WH 8109]
          Length = 838

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           ++ V  +H  + + E+  ++ D   GK  VLV   ++  G+D+PE  ++ I  A++ G  
Sbjct: 657 DLAVGLLHGRLSSAEKQAVLTDFAAGKSQVLVSTTVVEVGVDVPEASVMVIDHAERFGL- 715

Query: 666 RSKTSLIQTIGRAARNVNS 684
                L Q  GR  R   +
Sbjct: 716 ---AQLHQLRGRVGRGAAA 731


>gi|326203304|ref|ZP_08193169.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325986562|gb|EGD47393.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 542

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   + +  +L ++    + +H ++   +R+  I+  + GKF +LV  ++   G+ I  
Sbjct: 250 TKAAVDRVQSFLTKKGYSSQALHGDIPQSKRLNTIQQFKQGKFHILVATDVAARGIHIEG 309

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             LV   D   +     K + +  IGR  R
Sbjct: 310 LSLVINYDVPND-----KDNYVHRIGRTGR 334


>gi|229162791|ref|ZP_04290748.1| ATP-dependent DNA helicase recG [Bacillus cereus R309803]
 gi|228620673|gb|EEK77542.1| ATP-dependent DNA helicase recG [Bacillus cereus R309803]
          Length = 685

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 501 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 560

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 561 GL----SQLHQLRGRVGRGSEQSYCLLIAD 586


>gi|217961776|ref|YP_002340346.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|222097732|ref|YP_002531789.1| ATP-dependent RNA helicase, dead/deah box family [Bacillus cereus
           Q1]
 gi|229141022|ref|ZP_04269565.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST26]
 gi|217063251|gb|ACJ77501.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|221241790|gb|ACM14500.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           Q1]
 gi|228642455|gb|EEK98743.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST26]
          Length = 436

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 65/125 (52%), Gaps = 9/125 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA+ + + L ER ++V  +H ++   +R ++++ +R  +F  +V  +L   G+DI  
Sbjct: 255 TKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI-TKSIQLAIDETTRRRE 709
            G+  +++ +    L      +  +GR AR   S +   A TI   + + A+D   ++R 
Sbjct: 314 -GISHVINYELPSDL---DFFVHRVGRTARAGYSGI---AVTIYDPANEEALDSLEKQRH 366

Query: 710 KQLEH 714
            + +H
Sbjct: 367 IEFKH 371


>gi|194388512|dbj|BAG60224.1| unnamed protein product [Homo sapiens]
          Length = 544

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 273 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 332

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 333 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 368


>gi|170040294|ref|XP_001847939.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167863866|gb|EDS27249.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 818

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 34/149 (22%)

Query: 87  SEKQTREISEQTMTPSVQALARLIQSD-NPLLKNGKIWTPHRSWSINNHSKDITFFQMQT 145
           SEK+  E++E+          R+ + D N  +K GKI  P RSW  +   K++     + 
Sbjct: 357 SEKEVDEMTERDW--------RIFREDYNVTIKGGKIPNPIRSWKESGFPKEVLEIIDKV 408

Query: 146 DY-HPSGDQPAAIAQLLKGIHSREKVQLLLGV--TGSGKTFT--------------MAKV 188
            Y  P+  Q  AI     G+ +R+    ++G+  TGSGKT                + + 
Sbjct: 409 GYKEPTPIQRQAIPI---GLQNRD----IIGIAETGSGKTLAFLIPLLNWIQGLPKIERQ 461

Query: 189 IEAMQRP-AIVMAPNKILAAQLYSEFKNF 216
             A Q P AI++AP + LA Q+  E + F
Sbjct: 462 ETADQGPYAIILAPTRELAQQIEEETQKF 490


>gi|170579441|ref|XP_001894832.1| Helicase conserved C-terminal domain containing protein [Brugia
           malayi]
 gi|158598430|gb|EDP36322.1| Helicase conserved C-terminal domain containing protein [Brugia
           malayi]
          Length = 378

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           IL+   T R  + L    +    +V  +HS++   ER   +   R G+  +L+  ++   
Sbjct: 168 ILIFSHTCRECQALAIMFHGLGFKVGSLHSQISQQERTSSLTKFRSGRIKILICTDVASR 227

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           GLDIP   LV           ++  + I  +GR+AR
Sbjct: 228 GLDIPHVDLVV-----NHNVPQNPKTYIHRVGRSAR 258


>gi|118475108|ref|YP_891966.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118414334|gb|ABK82754.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 624

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+   TKR A+  + YL+     V  +H +     R + +   + GK  +LV  ++   G
Sbjct: 248 LVFTRTKRSADKCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKILVATDIAARG 307

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           LDI E   V  L+             +  IGR  R  N  V +
Sbjct: 308 LDIKELPFVINLE-----LPNVPEDYVHRIGRTGRAGNDGVAI 345


>gi|93006488|ref|YP_580925.1| transcription-repair coupling factor [Psychrobacter cryohalolentis
           K5]
 gi|92394166|gb|ABE75441.1| transcription-repair coupling factor [Psychrobacter cryohalolentis
           K5]
          Length = 1243

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +RMAE + E + E  + V +   + + LE  ++++     KF+VL+   ++  G+D+P  
Sbjct: 913 ERMAETIRELVPEARVGVAHGQMQERQLE--QVMQQYYHKKFNVLICSTIIETGIDVPNA 970

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 971 NTIIIERADKFGL----AQLHQLRGRVGRS 996


>gi|157828759|ref|YP_001495001.1| ATP-dependent DNA helicase RecG [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933486|ref|YP_001650275.1| ATP-dependent DNA helicase [Rickettsia rickettsii str. Iowa]
 gi|157801240|gb|ABV76493.1| ATP-dependent DNA helicase RecG [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908573|gb|ABY72869.1| ATP-dependent DNA helicase [Rickettsia rickettsii str. Iowa]
          Length = 713

 Score = 37.7 bits (86), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +H ++K  ++ +I++  + G+  +LV   ++  G+DIPE  L+ I +A++ G       L
Sbjct: 543 IHGKMKNEQKDQIMKQFKEGEIKILVATTVIEVGIDIPEATLIIIENAEQFGL----AQL 598

Query: 672 IQTIGRAAR 680
            Q  GR  R
Sbjct: 599 HQLRGRVGR 607


>gi|322710225|gb|EFZ01800.1| ATP dependent RNA helicase (Dbp5), putative [Metarhizium anisopliae
           ARSEF 23]
          Length = 492

 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 37/69 (53%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++ A ++   + +   +V  +H E  + ER +++   R G+  VL+  NLL  G
Sbjct: 320 IIFVKTRKSASEIQRRMMDDGHKVTVLHGEFDSGERQQLLAKFRSGESKVLITTNLLSRG 379

Query: 646 LDIPECGLV 654
           +D+    +V
Sbjct: 380 IDVSSVSMV 388


>gi|315635603|ref|ZP_07890867.1| DNA/RNA helicase [Arcobacter butzleri JV22]
 gi|315480092|gb|EFU70761.1| DNA/RNA helicase [Arcobacter butzleri JV22]
          Length = 924

 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 15/141 (10%)

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           +D   ++ S   +V+ + D++N  +  G   ++L   ++K     ++E   ++ I    +
Sbjct: 386 IDLLAKLLSVNKRVDFIIDKMNFYSNSGNKRKVLGFCVSKEHCNFMSEEFNKKGINSITL 445

Query: 613 HSEVKTLERIEIIRDLRL--GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            SE    +R E I+ L       +V+  +++  EG+DIP   +V         FLR   S
Sbjct: 446 TSEDSISKREEYIQKLENENDSLEVIFTVDIFNEGIDIPSINMVL--------FLRPTNS 497

Query: 671 ---LIQTIGRAARNVNSKVIL 688
               IQ +GR  R   +K  L
Sbjct: 498 PIVFIQQLGRGLRKYKNKEFL 518


>gi|312218885|emb|CBX98830.1| similar to ATP-dependent RNA helicase dbp5 [Leptosphaeria maculans]
          Length = 481

 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 2/97 (2%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+R AE+L   +     +V  +   ++  ER  II   R G+  VL+  N+L  G
Sbjct: 315 IIFVRTRRTAEELETRMVAEGHKVAQLSGAMEGPERDRIIDQFRSGEAKVLITTNVLARG 374

Query: 646 LDIPECGLVAILDAD--KEGFLRSKTSLIQTIGRAAR 680
           +D+    +V   D     +G      + +  IGR  R
Sbjct: 375 IDVQSVTMVINYDVPTMADGRQADPETYLHRIGRTGR 411


>gi|289679715|ref|ZP_06500605.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           syringae FF5]
          Length = 467

 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VL+   ++  G+D+P  
Sbjct: 143 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 200

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 201 NTIIIERADKVGL----AQLHQLRGRVGRS 226


>gi|254756714|ref|ZP_05208743.1| ATP-dependent DNA helicase RecG [Bacillus anthracis str. Australia
           94]
          Length = 539

 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 355 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 414

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 415 GL----SQLHQLRGRVGRGSEQSYCLLIAD 440


>gi|238650653|ref|YP_002916505.1| ATP-dependent DNA helicase [Rickettsia peacockii str. Rustic]
 gi|238624751|gb|ACR47457.1| ATP-dependent DNA helicase [Rickettsia peacockii str. Rustic]
          Length = 713

 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +H ++K  ++ +I++  + G+  +LV   ++  G+DIPE  L+ I +A++ G       L
Sbjct: 543 IHGKMKNEQKDQIMKQFKEGEIKILVATTVIEVGIDIPEATLIIIENAEQFGL----AQL 598

Query: 672 IQTIGRAAR 680
            Q  GR  R
Sbjct: 599 HQLRGRVGR 607


>gi|228940943|ref|ZP_04103502.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973872|ref|ZP_04134448.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980462|ref|ZP_04140772.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis Bt407]
 gi|228779282|gb|EEM27539.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis Bt407]
 gi|228785897|gb|EEM33900.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818779|gb|EEM64845.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326941624|gb|AEA17520.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 682

 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 498 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 557

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 558 GL----SQLHQLRGRVGRGSEQSYCLLIAD 583


>gi|229117341|ref|ZP_04246719.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock1-3]
 gi|228666241|gb|EEL21705.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock1-3]
          Length = 682

 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 498 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 557

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 558 GL----SQLHQLRGRVGRGSEQSYCLLIAD 583


>gi|303273712|ref|XP_003056209.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462293|gb|EEH59585.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 426

 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 11/143 (7%)

Query: 557 PPVEIRSARTQVE-----DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRV 609
           PP E R   TQ++      V D I     +G +I   V   +M +   + L      +R+
Sbjct: 214 PPPERRPINTQLQVYNEKTVCDAIQFELDRGGQIFYVVPKIQMIDGALQRLQGLFPCLRI 273

Query: 610 RYMHSEVKTLERIEIIRD-LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              H ++K  ++++I  D    GK DVL+   ++  GLDIP    + I +  + G L S 
Sbjct: 274 MKAHGKMKG-DQLDIAMDYFACGKADVLLCTTIVESGLDIPNVNTIIIEEVQQFG-LASL 331

Query: 669 TSLIQTIGRAARNVNSKVILYAD 691
             L   +GRA R   +  + +AD
Sbjct: 332 YQLRGRVGRACRQAYA-YMFHAD 353


>gi|221107786|ref|XP_002161873.1| PREDICTED: vasa-related protein CnVAS1 [Hydra magnipapillata]
          Length = 797

 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TKR+A+ L  YL +       +H +    +R E + + + G   VL+   +  
Sbjct: 607 RNLVFVQTKRLADFLASYLCQNGFHTTSIHGDRLQQQREEALAEFKAGTQHVLIATAVAA 666

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            GLDI +   V   D   E         I  IGR  R  N
Sbjct: 667 RGLDIADVKQVINYDLPDE-----IEEYIHRIGRTGRIGN 701


>gi|218134053|ref|ZP_03462857.1| hypothetical protein BACPEC_01943 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991428|gb|EEC57434.1| hypothetical protein BACPEC_01943 [Bacteroides pectinophilus ATCC
           43243]
          Length = 559

 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+  +DL   L  R      +H ++K  +R  ++ D R GK ++L+  ++   G+D+ +
Sbjct: 274 TKKQVDDLISELKGRGYFADGIHGDMKQAQRDRVMNDFRKGKTEILIATDVAARGIDVDD 333

Query: 651 CGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
             +V   D   D+E ++      I   GRA R
Sbjct: 334 VDIVFNYDLPQDEEYYVHR----IGRTGRAGR 361


>gi|197336247|ref|YP_002156253.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197317737|gb|ACH67184.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 421

 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V  K     L + L +R I     H +     R  ++   + G+ DVL+  ++   G
Sbjct: 259 LIFVNAKNACNHLADKLAKRGIAAEVFHGDKGQGARTRVLEAFKAGEIDVLIATDIAARG 318

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LDI +  +V   D       RS    +  IGR+ R
Sbjct: 319 LDIEKLPVVINFD-----LPRSPADYMHRIGRSGR 348


>gi|218899008|ref|YP_002447419.1| ATP-dependent DNA helicase RecG [Bacillus cereus G9842]
 gi|218545708|gb|ACK98102.1| ATP-dependent DNA helicase RecG [Bacillus cereus G9842]
          Length = 682

 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 498 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 557

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 558 GL----SQLHQLRGRVGRGSEQSYCLLIAD 583


>gi|168015786|ref|XP_001760431.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688445|gb|EDQ74822.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 675

 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I  + + G +I++   TKRM + L+  L  R+     +H +    ER  ++   R G+
Sbjct: 391 EQILRSQEPGSKIIVFCSTKRMCDMLSRNL-GRDFGAAAIHGDKSQSERDFVLSQFRTGR 449

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             +LV  ++   GLDI +   V   D     F       +  IGR  R
Sbjct: 450 TPILVATDVAARGLDIKDIRFVVNYD-----FPTGVEDYVHRIGRTGR 492


>gi|156838740|ref|XP_001643070.1| hypothetical protein Kpol_458p5 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113661|gb|EDO15212.1| hypothetical protein Kpol_458p5 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1022

 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 12/117 (10%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER-IEIIRDLRLGKFDVLVGINLL 642
           +I+L    + M E + + L   NI   Y+H ++ + E+ I   R  +  +  +LVG  L+
Sbjct: 443 KIILVRKEREMVEIINQNLVNNNISSCYVHGKLTSEEKTISFNRFKKNKEKKILVGTKLV 502

Query: 643 REGLDIPECGLVAILD--------ADKEGFLRSKTSLIQTIGRAARN---VNSKVIL 688
            EG++IPE   V +++            G +R +++ I     A R+   +NSK I+
Sbjct: 503 SEGINIPELKYVILVNYLPQIHEYIQTAGRIRGESACITLWNEACRDEFSINSKCIV 559


>gi|153832249|ref|ZP_01984916.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
 gi|148871560|gb|EDL70415.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
          Length = 499

 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 553 GLVDPPVEIR------SARTQVEDVYD-EINLAAQQGLR---------ILLTVLTKRMAE 596
           GLV+ PVEI       +ART  + +Y  ++   A   ++         +L+   TK  A 
Sbjct: 198 GLVNNPVEISVNPANSTARTVEQCIYPADVKKKAPMLVKLIKDGDWKQVLVFTKTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
            L ++L ++ I    +H       R + + D + G+  VLV  ++   G+DIP+
Sbjct: 258 RLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGIDIPQ 311


>gi|146092052|ref|XP_001470194.1| DEAD box RNA helicase [Leishmania infantum]
 gi|134084988|emb|CAM69387.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
 gi|322500494|emb|CBZ35571.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 389

 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 10/111 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++YD + +A       ++   T++  E L + +      V  MH ++   ER EI+R  R
Sbjct: 248 ELYDSLTIA-----HAVVFCNTRKKVEQLAKKMTREKFAVTAMHGDMPQAERDEIMRQFR 302

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G   VL+  +L   G+D+    LV   D        ++   I  IGR  R
Sbjct: 303 NGHSRVLITTDLWARGIDVERVSLVLSYD-----LPLAREQYIHRIGRTGR 348


>gi|189425013|ref|YP_001952190.1| ATP-dependent DNA helicase RecG [Geobacter lovleyi SZ]
 gi|189421272|gb|ACD95670.1| ATP-dependent DNA helicase RecG [Geobacter lovleyi SZ]
          Length = 765

 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 7/105 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           +MAE L   ++   +R+  +H  +K  E+  ++   +  + D+LV   ++  G+D+P   
Sbjct: 569 QMAEHLQADIFP-GLRLGLLHGRMKPEEKEAVMASFKKQELDILVATTVIEVGIDVPNAT 627

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVN--SKVILYADTITK 695
           L+ I  A++ G     + L Q  GR  R  +  S ++L A  +++
Sbjct: 628 LMVIEHAERFGL----SQLHQLRGRVGRGSHRSSCILLTAGKLSE 668


>gi|296201836|ref|XP_002748197.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 4
           [Callithrix jacchus]
          Length = 535

 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 264 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 323

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 324 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 359


>gi|296201832|ref|XP_002748195.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 2
           [Callithrix jacchus]
          Length = 603

 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 332 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 391

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 392 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 427


>gi|302891875|ref|XP_003044819.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256725744|gb|EEU39106.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 551

 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+ V TKR+A+D+T +L +       +H + +  ER  ++   +  K  ++V  ++  
Sbjct: 385 KILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKSAKSPIMVATDVAS 444

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            G+D+    +  +L+ D   +  +    I  IGR  R
Sbjct: 445 RGIDVRN--ITHVLNYD---YPNNSEDYIHRIGRTGR 476


>gi|228954132|ref|ZP_04116160.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805452|gb|EEM52043.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 682

 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 498 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 557

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 558 GL----SQLHQLRGRVGRGSEQSYCLLIAD 583


>gi|229061458|ref|ZP_04198803.1| ATP-dependent DNA helicase recG [Bacillus cereus AH603]
 gi|228717881|gb|EEL69529.1| ATP-dependent DNA helicase recG [Bacillus cereus AH603]
          Length = 682

 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 498 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 557

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 558 GL----SQLHQLRGRVGRGSEQSYCLLIAD 583


>gi|256829787|ref|YP_003158515.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578963|gb|ACU90099.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 545

 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           RIL+   T+  A  LT+ L    I V  +H       R   + + + GK  +LV  ++  
Sbjct: 244 RILVFARTRTWANRLTDKLAAHGISVAALHGSKSQSLRKRTLEEFKDGKIHILVATDVAA 303

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAID 702
            GLDI    LV   D        S    +  IGR  R  V+   +       +++ LAI+
Sbjct: 304 RGLDISNLPLVVNYD-----IPNSPEDYVHRIGRTGRAGVSGIAVSLVSPEERNLLLAIE 358

Query: 703 ETTR 706
           +  R
Sbjct: 359 DLLR 362


>gi|219851698|ref|YP_002466130.1| Hef nuclease [Methanosphaerula palustris E1-9c]
 gi|219545957|gb|ACL16407.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris
           E1-9c]
          Length = 754

 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 15/102 (14%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ++I  ++  R G+F VL+  ++  EGLD+P   LV   +A     + S+   IQ  GR  
Sbjct: 416 KQIAALQRFRDGEFRVLIATSVGEEGLDVPSTDLVIFYEA-----VPSEIRSIQRKGRTG 470

Query: 680 RNVNSKVILYADTITKSIQLAIDETTR----RREKQLEHNKK 717
           R+    +I+    +TK  Q   DET R     REK +    K
Sbjct: 471 RSGEGSIIVL---VTKGTQ---DETFRYVSQAREKSMRAGMK 506


>gi|297459070|ref|XP_613184.4| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 1 [Bos
           taurus]
 gi|297487271|ref|XP_002696147.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 1 [Bos
           taurus]
 gi|194386232|dbj|BAG59680.1| unnamed protein product [Homo sapiens]
 gi|296476160|gb|DAA18275.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 1 [Bos taurus]
          Length = 535

 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  ++  
Sbjct: 264 KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 323

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            GLD+ +   V   D     +  S    I  IGR AR+  +
Sbjct: 324 RGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKT 359


>gi|330881517|gb|EGH15666.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 416

 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           ++ A DL E + E   R+   H +++  E  +++ D    +F+VL+   ++  G+D+P  
Sbjct: 206 EKCAADLAELVPE--ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 263

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             + I  ADK G       L Q  GR  R+
Sbjct: 264 NTIIIERADKFGL----AQLHQLRGRVGRS 289


>gi|309360868|emb|CAP30554.2| hypothetical protein CBG_11408 [Caenorhabditis briggsae AF16]
          Length = 559

 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 16/126 (12%)

Query: 566 TQVEDVYDE-----------INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           TQV DV +E            ++  Q+  + ++ V TKR A++LT  +         +H 
Sbjct: 349 TQVVDVLEEHAKQAKLMELLNHIMNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIHG 408

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +    ER  ++++ + GK  +L+  ++   GLD+ +   V   D     +  +    +  
Sbjct: 409 DKNQGERDWVLQEFKAGKMPILLATDVAARGLDVDDIKFVINYD-----YPNNSEDYVHR 463

Query: 675 IGRAAR 680
           IGR  R
Sbjct: 464 IGRTGR 469


>gi|299890779|ref|NP_001177729.1| ATP-dependent RNA helicase DDX19B isoform 3 [Mus musculus]
          Length = 467

 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++Y  I +A     + ++   T++ A  L   L +   +V  +  E+   +R  +I   R
Sbjct: 326 NLYGAITIA-----QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR 380

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
            GK  VLV  N+   G+D+ +  +V   D   DK+G   ++T L   IGR  R
Sbjct: 381 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYL-HRIGRTGR 432


>gi|225075811|ref|ZP_03719010.1| hypothetical protein NEIFLAOT_00827 [Neisseria flavescens
           NRL30031/H210]
 gi|224952844|gb|EEG34053.1| hypothetical protein NEIFLAOT_00827 [Neisseria flavescens
           NRL30031/H210]
          Length = 300

 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++   TK+  + +T  L  RNI  + +H +     R+E +   + G   VLV  ++  
Sbjct: 87  QVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTLRVLVATDVAA 146

Query: 644 EGLDIPECGLV 654
            GLDI E   V
Sbjct: 147 RGLDIAELPFV 157


>gi|14279304|gb|AAK58563.1|AF265295_1 Rad25-like protein [Methanosarcina thermophila]
          Length = 489

 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  I+   R+G +  +V   +L EG+D+PE  +  I+         SK + +Q +GR  
Sbjct: 367 ERNSILEKFRIGSYRAVVTSKVLDEGIDVPEANVGVIVSGTG-----SKRAYVQRLGRIL 421

Query: 680 RNV-NSKVILYADTITKSIQLAIDETTRRREKQLEH 714
           R     K +LY    +++ +     T +RR++ L++
Sbjct: 422 RKKEGKKAVLYEIIASETSETG---TAQRRKEALDN 454


>gi|71281299|ref|YP_270887.1| RecQ domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71147039|gb|AAZ27512.1| RecQ domain protein [Colwellia psychrerythraea 34H]
          Length = 690

 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 11/124 (8%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           PV       Q+E +     ++AQQG  I+   L +  AE + +YL ++ I     H+   
Sbjct: 219 PVTQAHKNKQLEQI-----ISAQQGAGIVYVTL-QHSAETVAQYLKQQGINACAYHAGFD 272

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           +  R +I +D   GK  V+V       G+D      V   D  K     S  +  Q IGR
Sbjct: 273 SDTRSQIQQDFMAGKIQVIVATIAFGMGIDKSNIRFVIHYDLPK-----SIENYSQEIGR 327

Query: 678 AARN 681
           A R+
Sbjct: 328 AGRD 331


>gi|30021943|ref|NP_833574.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 14579]
 gi|228960071|ref|ZP_04121735.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047542|ref|ZP_04193132.1| ATP-dependent DNA helicase recG [Bacillus cereus AH676]
 gi|229111326|ref|ZP_04240879.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock1-15]
 gi|229129131|ref|ZP_04258104.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-Cer4]
 gi|229146426|ref|ZP_04274797.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST24]
 gi|229152054|ref|ZP_04280249.1| ATP-dependent DNA helicase recG [Bacillus cereus m1550]
 gi|296504350|ref|YP_003666050.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis BMB171]
 gi|29897499|gb|AAP10775.1| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 14579]
 gi|228631403|gb|EEK88037.1| ATP-dependent DNA helicase recG [Bacillus cereus m1550]
 gi|228637059|gb|EEK93518.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST24]
 gi|228654368|gb|EEL10233.1| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-Cer4]
 gi|228672102|gb|EEL27393.1| ATP-dependent DNA helicase recG [Bacillus cereus Rock1-15]
 gi|228723789|gb|EEL75144.1| ATP-dependent DNA helicase recG [Bacillus cereus AH676]
 gi|228799587|gb|EEM46540.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296325402|gb|ADH08330.1| ATP-dependent DNA helicase recG [Bacillus thuringiensis BMB171]
          Length = 682

 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           Y+   +V  MH  + + E+ EI+      K  +LV   ++  G+++P   ++ I DA++ 
Sbjct: 498 YQGKCQVGLMHGRLSSQEKEEIMGQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERF 557

Query: 663 GFLRSKTSLIQTIGRAARNV-NSKVILYAD 691
           G     + L Q  GR  R    S  +L AD
Sbjct: 558 GL----SQLHQLRGRVGRGSEQSYCLLIAD 583


>gi|21223065|ref|NP_628844.1| DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
 gi|7321275|emb|CAB82053.1| putative DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
          Length = 473

 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +AA+ G R+L+ + TK   + LT++L    +R   +H      +R   +   + G   VL
Sbjct: 280 IAARDG-RVLMFLDTKHAVDRLTDHLLNSGVRAAALHGGKSQSQRTRTLAQFKTGHVTVL 338

Query: 637 VGINLLREGLDIPECGLVAILD 658
           V  N+   G+ +    LV  +D
Sbjct: 339 VATNVAARGIHVDNLDLVVNVD 360


>gi|157826077|ref|YP_001493797.1| ATP-dependent RNA helicase RhlE [Rickettsia akari str. Hartford]
 gi|157800035|gb|ABV75289.1| ATP-dependent RNA helicase RhlE [Rickettsia akari str. Hartford]
          Length = 410

 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
            EI+     V D      L  Q G R   +++ V TKR A+ L + L   N +   +H +
Sbjct: 208 AEIKQESIHVSDKEKFSELTKQLGNREGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGD 267

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +   +R  +I   R     ++V  ++   GLDIP  
Sbjct: 268 LSQRQRERVILSFRKSNHRIMVATDVAARGLDIPHT 303


>gi|320104222|ref|YP_004179813.1| primosomal protein N' [Isosphaera pallida ATCC 43644]
 gi|319751504|gb|ADV63264.1| primosomal protein N' [Isosphaera pallida ATCC 43644]
          Length = 855

 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 581 QGLRI-LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           QG R+  + + T+R+  ++     +R +R     +   +    +++   + GK D+L+G 
Sbjct: 607 QGGRLSYMGIGTERLEREVKAEFGDRVVRRMDSDTMRSSASYEQVLNSFKEGKIDILLGT 666

Query: 640 NLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
            ++ +GLD P   LV +++AD    L       R+   + Q  GR  R 
Sbjct: 667 QMIAKGLDFPNVTLVGVINADTALHLPDFRARERTFQLVAQVAGRTGRG 715


>gi|307295470|ref|ZP_07575306.1| transcription-repair coupling factor [Sphingobium chlorophenolicum
           L-1]
 gi|306878509|gb|EFN09729.1| transcription-repair coupling factor [Sphingobium chlorophenolicum
           L-1]
          Length = 1157

 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 1/92 (1%)

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q++ +L   + +    L   L    Y R D    RG F + G  +++FP   E+   R+ 
Sbjct: 129 QLVAKLAPKERIAISRLAEMLQANGYVRTDTVHDRGEFAIRGGIVDLFPGG-EEQPLRLD 187

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
            FG++IE +  F P   +   +VE   +   S
Sbjct: 188 FFGDEIETVRRFDPADQRTSGSVEGFTLLPAS 219


>gi|302308874|ref|NP_985999.3| AFR452Cp [Ashbya gossypii ATCC 10895]
 gi|299790837|gb|AAS53823.3| AFR452Cp [Ashbya gossypii ATCC 10895]
          Length = 559

 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           I++ +  K  A  L+E  +ER  R R   +H      +R   +R LR GK D+++  N+ 
Sbjct: 410 IIIFINYKATANWLSEK-FERETRFRTTVLHGSRSQEQREHSLRQLRSGKVDIMIATNVA 468

Query: 643 REGLDIPECGLV 654
             G+DIP   LV
Sbjct: 469 GRGIDIPNVSLV 480


>gi|215788934|gb|ACJ69403.1| Vasa [Botryllus schlosseri]
          Length = 547

 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 7/111 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TKR A+ L     + N+    +H + +  ER   + D + G   +L+  ++  
Sbjct: 349 RTLVFVDTKRNADFLATLPSQENLPTTSIHGDRQQREREMALVDFKNGTCPILIATSVAA 408

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVILYADT 692
            GLDIP+   V   D   E         +  IGR  R  N+ +    Y D+
Sbjct: 409 RGLDIPKVEHVINYDLPSE-----IDEYVHRIGRTGRCGNLGTATSFYDDS 454


>gi|254448048|ref|ZP_05061512.1| cold-shock deAd box protein a [gamma proteobacterium HTCC5015]
 gi|198262474|gb|EDY86755.1| cold-shock deAd box protein a [gamma proteobacterium HTCC5015]
          Length = 586

 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 8/125 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK M  +L + L  R  R   ++ ++    R   I+ L+  K D+LV  ++   
Sbjct: 248 VIMFARTKNMTVELADKLEARGYRSAAINGDMTQKIRERTIKQLKDEKIDILVATDVAAR 307

Query: 645 GLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           G+D+     V   D   D E ++      I   GRA R  + K IL+     + +  AI+
Sbjct: 308 GIDVARVSHVINFDIPYDTEAYVHR----IGRTGRAGR--DGKAILFVAPRERHLLRAIE 361

Query: 703 ETTRR 707
           + TR+
Sbjct: 362 KATRQ 366


>gi|160881936|ref|YP_001560904.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160430602|gb|ABX44165.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 527

 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+   TKR  ++L   L  R      +H ++K  +R  ++   R GK ++LV  ++  
Sbjct: 244 RCLVFCNTKRQVDELVTALSGRGFFAEGLHGDLKQQQRDRVMSSFRTGKAEILVATDVAA 303

Query: 644 EGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARN 681
            G+D+ +   V   D   D+E ++      I   GRA R 
Sbjct: 304 RGIDVDDVEAVFNYDVPQDEEYYVHR----IGRTGRAGRT 339


>gi|34581468|ref|ZP_00142948.1| ATP-dependent DNA helicase RecG [Rickettsia sibirica 246]
 gi|28262853|gb|EAA26357.1| ATP-dependent DNA helicase RecG [Rickettsia sibirica 246]
          Length = 713

 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +H ++K  ++ +I++  + G+  +LV   ++  G+DIPE  L+ I +A++ G       L
Sbjct: 543 IHGKMKNEQKDQIMKQFKEGEIKILVATTVIEVGIDIPEATLIIIENAEQFGL----AQL 598

Query: 672 IQTIGRAAR 680
            Q  GR  R
Sbjct: 599 HQLRGRVGR 607


>gi|324328191|gb|ADY23451.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 436

 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 65/125 (52%), Gaps = 9/125 (7%)

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MA+ + + L ER ++V  +H ++   +R ++++ +R  +F  +V  +L   G+DI  
Sbjct: 255 TKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIE- 313

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI-TKSIQLAIDETTRRRE 709
            G+  +++ +    L      +  +GR AR   S +   A TI   + + A+D   ++R 
Sbjct: 314 -GISHVINYELPSDL---DFFVHRVGRTARAGYSGI---AVTIYDPANEEALDSLEKQRH 366

Query: 710 KQLEH 714
            + +H
Sbjct: 367 IEFKH 371


Searching..................................................done


Results from round 2




>gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040668|gb|ACT57464.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 805

 Score = 1111 bits (2874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 805/805 (100%), Positives = 805/805 (100%)

Query: 1   MPKKTRSFPKKDSRIQSISTRVDDLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNA 60
           MPKKTRSFPKKDSRIQSISTRVDDLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNA
Sbjct: 1   MPKKTRSFPKKDSRIQSISTRVDDLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNA 60

Query: 61  AKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG 120
           AKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG
Sbjct: 61  AKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG 120

Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180
           KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG
Sbjct: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR
Sbjct: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG
Sbjct: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI
Sbjct: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
           SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ
Sbjct: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
           RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI
Sbjct: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC
Sbjct: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
           QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE
Sbjct: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD
Sbjct: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
           KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI
Sbjct: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720

Query: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
           NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF
Sbjct: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780

Query: 781 EEAARIRDEIKRLKSSPYFQGLDDS 805
           EEAARIRDEIKRLKSSPYFQGLDDS
Sbjct: 781 EEAARIRDEIKRLKSSPYFQGLDDS 805


>gi|315122486|ref|YP_004062975.1| excinuclease ABC subunit B [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495888|gb|ADR52487.1| excinuclease ABC subunit B [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 817

 Score = 1011 bits (2613), Expect = 0.0,   Method: Composition-based stats.
 Identities = 654/805 (81%), Positives = 723/805 (89%), Gaps = 12/805 (1%)

Query: 13  SRIQSI-STRVDDLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNAAKRM----LIH 67
           S I+S  S+  DD DY SFE+KQ   DK +VA+ MR+IRSEAGKHRKN AKR+     +H
Sbjct: 13  SHIESTRSSFTDDQDYLSFEKKQFYADKEIVANTMRQIRSEAGKHRKNVAKRINKEKSLH 72

Query: 68  QRENTASKGEFQSQSSISMSEKQT-------REISEQTMTPSVQALARLIQSDNPLLKNG 120
             +  +SK   QS+   +  +K+T       +EI+E  MTPSVQALARLIQSDNPL KNG
Sbjct: 73  NSDPKSSKIALQSKKPTTQDKKRTALNNIPKKEIAENAMTPSVQALARLIQSDNPLFKNG 132

Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180
           KIWTPHRS SI+NH K I+ FQM TDY PSGDQP+AI+Q+++ IH+ EK+QLLLGVTGSG
Sbjct: 133 KIWTPHRSLSIHNHPKKISPFQMHTDYQPSGDQPSAISQIVESIHAEEKIQLLLGVTGSG 192

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP+NAVEYFVSYYDYYQPEAYVPR
Sbjct: 193 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPNNAVEYFVSYYDYYQPEAYVPR 252

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI+++KIG
Sbjct: 253 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMILKIKIG 312

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           D +EQKELLSSLVKQQYKRQD+GI+RG+FRVCGDSIEIFPSHLE+ AWR+SMFGNDIEEI
Sbjct: 313 DQIEQKELLSSLVKQQYKRQDMGIVRGSFRVCGDSIEIFPSHLENTAWRISMFGNDIEEI 372

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
           +EF PLTGQK RN+E IKIYANSHYVTPRPTLN AMK IKEEL +RLIELEKEGRLLE+Q
Sbjct: 373 AEFDPLTGQKNRNLEEIKIYANSHYVTPRPTLNAAMKCIKEELNVRLIELEKEGRLLESQ 432

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
           RL QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI E++LLFVDESHVTI
Sbjct: 433 RLAQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYISENALLFVDESHVTI 492

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           PQISGMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+CLRPTTIVVSATPG+WELE+C
Sbjct: 493 PQISGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDCLRPTTIVVSATPGAWELEKC 552

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
           QG+IVEQIIRPTGLVDPPVEIRSARTQVED+ +EINL  Q GLRILLTVLTKRMAEDLTE
Sbjct: 553 QGMIVEQIIRPTGLVDPPVEIRSARTQVEDIKEEINLTIQNGLRILLTVLTKRMAEDLTE 612

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           YLYE NIRVRYMHSEV TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD
Sbjct: 613 YLYEHNIRVRYMHSEVHTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 672

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
           KEGFLRS+TSLIQTIGRAARNV+SKVILYADT+TKSI+LAIDETTRRREKQ E+N+K+NI
Sbjct: 673 KEGFLRSRTSLIQTIGRAARNVDSKVILYADTMTKSIKLAIDETTRRREKQQEYNRKNNI 732

Query: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
            P+SVKEKI+EVIDPIL E+ + + I+I+ +QL  SKK+ + HLKSLRKQM +AADN+NF
Sbjct: 733 KPESVKEKIIEVIDPILQENNSKSEITINTEQLPQSKKERELHLKSLRKQMLIAADNMNF 792

Query: 781 EEAARIRDEIKRLKSSPYFQGLDDS 805
           EEAARIRDEIKRLK++  +  LD S
Sbjct: 793 EEAARIRDEIKRLKNAFSYDTLDSS 817


>gi|325293370|ref|YP_004279234.1| excinuclease ABC subunit B [Agrobacterium sp. H13-3]
 gi|325061223|gb|ADY64914.1| excinuclease ABC subunit B [Agrobacterium sp. H13-3]
          Length = 1043

 Score =  998 bits (2580), Expect = 0.0,   Method: Composition-based stats.
 Identities = 508/804 (63%), Positives = 624/804 (77%), Gaps = 34/804 (4%)

Query: 33  KQLEVDKTM-VADAMRRIRSEAGKHRKN------------------------AAKRMLIH 67
           KQLE +      +  R + S+AGKHRK                          A+ + I 
Sbjct: 87  KQLEAEAEAGSVETQREVASKAGKHRKKIEIEARKEAEKATNKTAKNTTASKTARGVSIG 146

Query: 68  Q--RENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTP 125
                 T +       + + +S ++   ++   +T +V+AL+ LI+S NPL K+GK+WTP
Sbjct: 147 ASSDPKTRAAAGLNPVAGMDVSLEEAANLAPGAVTATVEALSALIESGNPLFKDGKMWTP 206

Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185
           HR          +T  +M ++Y P+GDQP AIA L++GI+S E+ Q+LLGVTGSGKTFTM
Sbjct: 207 HRPARPPKSEGGVTI-RMNSEYQPAGDQPTAIADLVEGINSGERSQVLLGVTGSGKTFTM 265

Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           AKVIEA QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DT+I
Sbjct: 266 AKVIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFI 325

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
           EKESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+++GD ++Q
Sbjct: 326 EKESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMQVGDRLDQ 385

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
           ++LL+ LV QQYKR+D+   RG+FRV GD+IEIFP+HLED AWR+SMFG++I+ I+EF P
Sbjct: 386 RQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDP 445

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           LTGQK  +++++KIYANSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR
Sbjct: 446 LTGQKTGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELRVRLAELEKAGRLLEAQRLEQR 505

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
             YD+EMLE TGSC  IENYSRYLTGRNPGEPPPTLFEYIP+++LLF+DESHV++ QI G
Sbjct: 506 TRYDIEMLEATGSCAGIENYSRYLTGRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGG 565

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP T+ VSATPGSWE+EQ  G+  
Sbjct: 566 MYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPLTVAVSATPGSWEMEQAGGVFA 625

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           EQ+IRPTGL+DPPVE+RSAR+QV+DV  EI   A +G R L TVLTKRMAEDLTEYL+E+
Sbjct: 626 EQVIRPTGLIDPPVEVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQ 685

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFL
Sbjct: 686 GVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFL 745

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS+TSLIQTIGRAARNV+ KVILYAD IT S++ A++ET+RRREKQ+ +N +H I P+SV
Sbjct: 746 RSETSLIQTIGRAARNVDGKVILYADNITGSMKRAMEETSRRREKQMAYNAEHGITPESV 805

Query: 726 KEKIMEVIDPILLEDAATTNISID-----AQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
           K KI +++D +   D    +IS       A    L     ++HL +L K M  AA +L+F
Sbjct: 806 KAKISDILDSVYERDHVRADISGVSGKGFADGGHLVGNNLQSHLNALEKSMRDAAADLDF 865

Query: 781 EEAARIRDEIKRLKSSPYFQGLDD 804
           E+AAR+RDEIKRLK++     +DD
Sbjct: 866 EKAARLRDEIKRLKATE-LAVMDD 888


>gi|327192675|gb|EGE59613.1| excinuclease ABC protein, B subunit [Rhizobium etli CNPAF512]
          Length = 1013

 Score =  997 bits (2578), Expect = 0.0,   Method: Composition-based stats.
 Identities = 512/802 (63%), Positives = 622/802 (77%), Gaps = 32/802 (3%)

Query: 33  KQLEVDKTMVA-DAMRRIRSEAGKHRKNAAKRMLIHQR---------------------- 69
           KQLE D      ++ R I S+AGKHRK        H                        
Sbjct: 36  KQLEADAEASGVESQRDIASKAGKHRKAVENAARKHSEAVSVNKKATVGKTARGVSIGGS 95

Query: 70  --ENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHR 127
               T +       + + +S +    IS   +T +V+AL++LI+S NPL KNGKIWTPHR
Sbjct: 96  SDPKTRAAAGLNPVAGLDISLEDAGNISPGGVTATVEALSKLIESGNPLHKNGKIWTPHR 155

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
               +     I    M++DY P+GDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMAK
Sbjct: 156 PARPDKSEGGIRIL-MKSDYEPAGDQPTAIRDLVEGLENGDRSQVLLGVTGSGKTFTMAK 214

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           VIEA QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK
Sbjct: 215 VIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEK 274

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           ESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++
Sbjct: 275 ESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQ 334

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           LL+ LV QQYKR+D+   RG+FRV GD+IE+FP+HLED AWR+SMFG++I+ I+EF PLT
Sbjct: 335 LLADLVAQQYKRRDMDFTRGSFRVRGDTIELFPAHLEDAAWRISMFGDEIDAITEFDPLT 394

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           GQK+ +++++KIYANSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR  
Sbjct: 395 GQKVGDLKSVKIYANSHYVTPRPTLNGAIKSIKEELRLRLAELEKAGRLLEAQRLEQRTR 454

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           YD+EMLE TGSCQ IENYSRYLTGR+PG+PPPTLFEYIP+++L+F+DESHVT+PQI GMY
Sbjct: 455 YDIEMLEATGSCQGIENYSRYLTGRDPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGMY 514

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
           RGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+EQ  G+  EQ
Sbjct: 515 RGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQSGGVFAEQ 574

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           +IRPTGL+DPPVE+RSARTQV+DV  EI   A +G R L TVLTKRMAEDLTEYL+E+ +
Sbjct: 575 VIRPTGLIDPPVEVRSARTQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGV 634

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS
Sbjct: 635 RVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRS 694

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           +TSLIQTIGRAARNV+ KVILYAD +T S+Q A+DET RRREKQ+ +N ++ I P+SVK 
Sbjct: 695 ETSLIQTIGRAARNVDGKVILYADQVTGSMQRAMDETGRRREKQMAYNLENGITPESVKA 754

Query: 728 KIMEVIDPILLEDAATTNISID-----AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
           KI +++D +   D    +IS       A   +L     +AHL +L K M  AA +L+FE+
Sbjct: 755 KISDILDSVYERDHVRADISGVSGKGFADGGNLVGNNLQAHLNALEKSMRDAAADLDFEK 814

Query: 783 AARIRDEIKRLKSSPYFQGLDD 804
           AAR+RDEIKRLK++     +DD
Sbjct: 815 AARLRDEIKRLKAAE-LAVMDD 835


>gi|190892262|ref|YP_001978804.1| excinuclease ABC protein, B subunit [Rhizobium etli CIAT 652]
 gi|190697541|gb|ACE91626.1| excinuclease ABC protein, B subunit [Rhizobium etli CIAT 652]
          Length = 1013

 Score =  996 bits (2574), Expect = 0.0,   Method: Composition-based stats.
 Identities = 512/802 (63%), Positives = 623/802 (77%), Gaps = 32/802 (3%)

Query: 33  KQLEVDKTMVA-DAMRRIRSEAGKHRKNAAKRMLIHQR---------------------- 69
           KQLE D      ++ R I S+AGKHRK        H                        
Sbjct: 36  KQLEADAEASGVESQRDIASKAGKHRKAVENAARKHSEAVSVNKKATVGKTARGVSIGGS 95

Query: 70  --ENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHR 127
               T +       + + +S +   +IS   +T +V+AL++LI+S NPL KNGKIWTPHR
Sbjct: 96  SDPKTRAAAGLNPVAGLDISLEDAGKISPGGVTATVEALSKLIESGNPLHKNGKIWTPHR 155

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
               +     I    M++DY P+GDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMAK
Sbjct: 156 PARPDKSEGGIRIL-MKSDYEPAGDQPTAIRDLVEGLENGDRSQVLLGVTGSGKTFTMAK 214

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           VIEA QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK
Sbjct: 215 VIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEK 274

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           ESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++
Sbjct: 275 ESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQ 334

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           LL+ LV QQYKR+D+   RG+FRV GD+IE+FP+HLED AWR+SMFG++I+ I+EF PLT
Sbjct: 335 LLADLVAQQYKRRDMDFTRGSFRVRGDTIELFPAHLEDAAWRISMFGDEIDAITEFDPLT 394

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           GQK+ +++++KIYANSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR  
Sbjct: 395 GQKVGDLKSVKIYANSHYVTPRPTLNGAIKSIKEELRLRLAELEKAGRLLEAQRLEQRTR 454

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           YD+EMLE TGSCQ IENYSRYLTGR+PG+PPPTLFEYIP+++L+F+DESHVT+PQI GMY
Sbjct: 455 YDIEMLEATGSCQGIENYSRYLTGRDPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGMY 514

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
           RGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+EQ  G+  EQ
Sbjct: 515 RGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQSGGVFAEQ 574

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           +IRPTGL+DPPVE+RSARTQV+DV  EI   A +G R L TVLTKRMAEDLTEYL+E+ +
Sbjct: 575 VIRPTGLIDPPVEVRSARTQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGV 634

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS
Sbjct: 635 RVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRS 694

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           +TSLIQTIGRAARNV+ KVILYAD +T S+Q A+DET RRREKQ+ +N ++ I P+SVK 
Sbjct: 695 ETSLIQTIGRAARNVDGKVILYADQVTGSMQRAMDETGRRREKQMAYNLENGITPESVKA 754

Query: 728 KIMEVIDPILLEDAATTNISID-----AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
           KI +++D +   D    +IS       A   +L     +AHL +L K M  AA +L+FE+
Sbjct: 755 KISDILDSVYERDHVRADISGVSGKGFADGGNLVGNNLQAHLNALEKSMRDAAADLDFEK 814

Query: 783 AARIRDEIKRLKSSPYFQGLDD 804
           AAR+RDEIKRLK++     +DD
Sbjct: 815 AARLRDEIKRLKAAE-LAVMDD 835


>gi|86358172|ref|YP_470064.1| excinuclease ABC subunit B [Rhizobium etli CFN 42]
 gi|86282274|gb|ABC91337.1| excinuclease ABC subunit B protein [Rhizobium etli CFN 42]
          Length = 961

 Score =  996 bits (2574), Expect = 0.0,   Method: Composition-based stats.
 Identities = 513/802 (63%), Positives = 620/802 (77%), Gaps = 32/802 (3%)

Query: 33  KQLEVDKTMVA-DAMRRIRSEAGKHRKNAAKRMLIHQR---------------------- 69
           KQLE +      ++ R I S+AGKHRK        H                        
Sbjct: 2   KQLEAEAEASGVESQREIASKAGKHRKRVENEARKHSEAVSVNKKATVSKTARGVSIGGS 61

Query: 70  --ENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHR 127
               T +       + + +S +    IS   +T +V+AL++LI+S NPL KNGKIWTPHR
Sbjct: 62  SDPKTRAAAGLNPVAGLDISLEDAGSISPGGVTATVEALSKLIESGNPLHKNGKIWTPHR 121

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
               +     IT  +M ++Y P+GDQP AI  L++G+ S E+ Q+LLGVTGSGKTFTMAK
Sbjct: 122 PARPDKSEGGITI-RMDSEYKPAGDQPTAIRDLVEGLQSGERSQVLLGVTGSGKTFTMAK 180

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           VIE  QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK
Sbjct: 181 VIEETQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEK 240

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           ESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++
Sbjct: 241 ESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMNVGDRLDQRQ 300

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           LL+ LV QQYKR+DI   RG+FRV GD+IEIFP+HLED AWR+SMFG++I+ I+EF PLT
Sbjct: 301 LLADLVAQQYKRRDIDFTRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDAITEFDPLT 360

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           GQK  +++++KIYANSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR  
Sbjct: 361 GQKTGDLKSVKIYANSHYVTPRPTLNGAIKAIKEELRLRLAELEKAGRLLEAQRLEQRTR 420

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           YD+EMLE TGSCQ IENYSRYLTGR+PG+PPPTLFEYIP+++++F+DESHVT+PQI GMY
Sbjct: 421 YDIEMLEATGSCQGIENYSRYLTGRDPGDPPPTLFEYIPDNAIVFIDESHVTVPQIGGMY 480

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
           RGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+EQ  G+  EQ
Sbjct: 481 RGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQSGGVFAEQ 540

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           +IRPTGL+DPPVE+RSARTQV+DV  EI   A +G R L TVLTKRMAEDLTEYL+E+ +
Sbjct: 541 VIRPTGLIDPPVEVRSARTQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGV 600

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS
Sbjct: 601 RVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRS 660

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           +TSLIQTIGRAARNV+ KVILYAD +T S+Q A+DET RRREKQ+ +N ++ I P+SVK 
Sbjct: 661 ETSLIQTIGRAARNVDGKVILYADQVTGSMQRAMDETARRREKQMAYNLENGITPESVKA 720

Query: 728 KIMEVIDPILLEDAATTNISID-----AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
           KI +++D +   D    +IS       A   +L     +AHL +L K M  AA +L+FE+
Sbjct: 721 KISDILDSVYERDHVRADISGVSGKGFADGGNLVGNNLQAHLNALEKSMRDAAADLDFEK 780

Query: 783 AARIRDEIKRLKSSPYFQGLDD 804
           AAR+RDEIKRLK+      +DD
Sbjct: 781 AARLRDEIKRLKA-VELAAMDD 801


>gi|15889291|ref|NP_354972.1| excinuclease ABC subunit B [Agrobacterium tumefaciens str. C58]
 gi|15157125|gb|AAK87757.1| excinuclease ABC subunit B [Agrobacterium tumefaciens str. C58]
          Length = 988

 Score =  995 bits (2573), Expect = 0.0,   Method: Composition-based stats.
 Identities = 511/804 (63%), Positives = 624/804 (77%), Gaps = 34/804 (4%)

Query: 33  KQLEVDKTM-VADAMRRIRSEAGKHRKN------------------------AAKRMLIH 67
           KQLE +      +  R I S+AGKHRK                          A+ + I 
Sbjct: 37  KQLEAEAEAGSVETQREIASKAGKHRKKIEIEARKEAEKAANKTAKNTTASKTARGVSIG 96

Query: 68  Q--RENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTP 125
                 T +       + + +S ++   ++   +T +V+AL+ LI+S NPL K+GK+WTP
Sbjct: 97  ASSDPKTRAAAGLNPVAGMDVSLEEAANLAPGAVTATVEALSALIESGNPLFKDGKMWTP 156

Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185
           HR          +T  +M ++Y P+GDQP AIA L++GI+S E+ Q+LLGVTGSGKTFTM
Sbjct: 157 HRPARPPKSEGGVTI-RMDSEYQPAGDQPTAIADLVEGINSGERSQVLLGVTGSGKTFTM 215

Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           AKVIEA QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DT+I
Sbjct: 216 AKVIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFI 275

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
           EKESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+++GD ++Q
Sbjct: 276 EKESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMQVGDRLDQ 335

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
           ++LL+ LV QQYKR+D+   RG+FRV GD+IEIFP+HLED AWR+SMFG++I+ I+EF P
Sbjct: 336 RQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDP 395

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           LTGQK  +++++KIYANSHYVTPRPTLN A+K IKEELK+RL ELEK GRLLEAQRLEQR
Sbjct: 396 LTGQKTGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELKVRLAELEKAGRLLEAQRLEQR 455

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
             YD+EMLE TGSC  IENYSRYLTGRNPGEPPPTLFEYIP+++LLF+DESHV++ QI G
Sbjct: 456 TRYDIEMLEATGSCAGIENYSRYLTGRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGG 515

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP T+ VSATPGSWE+EQ  G+  
Sbjct: 516 MYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPLTVAVSATPGSWEMEQSGGVFA 575

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           EQ+IRPTGL+DPPVE+RSAR+QV+DV  EI   A +G R L TVLTKRMAEDLTEYL+E+
Sbjct: 576 EQVIRPTGLIDPPVEVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQ 635

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFL
Sbjct: 636 GVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFL 695

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS+TSLIQTIGRAARNV+ KVILYAD IT S++ A++ET+RRREKQ+ +N +H I P+SV
Sbjct: 696 RSETSLIQTIGRAARNVDGKVILYADNITGSMKRAMEETSRRREKQMAYNAEHGITPESV 755

Query: 726 KEKIMEVIDPILLEDAATTNISID-----AQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
           K KI +++D +   D    +IS       A    L     +AHL +L K M  AA +L+F
Sbjct: 756 KAKISDILDSVYERDHVRADISGVSGKGFADGGHLVGNNLQAHLNALEKSMRDAAADLDF 815

Query: 781 EEAARIRDEIKRLKSSPYFQGLDD 804
           E+AAR+RDEIKRLK++     +DD
Sbjct: 816 EKAARLRDEIKRLKAAE-LATMDD 838


>gi|209549788|ref|YP_002281705.1| excinuclease ABC subunit B [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535544|gb|ACI55479.1| excinuclease ABC, B subunit [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 990

 Score =  991 bits (2561), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/788 (64%), Positives = 621/788 (78%), Gaps = 18/788 (2%)

Query: 33  KQLEVDKTMVA-DAMRRIRSEAGKHRKNAA---------KRMLIHQRENTASKGEFQSQS 82
           KQLE D      +  R+I S+AGKHRK              M       T +       +
Sbjct: 36  KQLEADAEASGVETQRQIASKAGKHRKKVEIAASKSARGTSMGGSTDPKTRAAAGLNPVA 95

Query: 83  SISMSEKQTREI-SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFF 141
            ++ + ++   + +   +T +V+AL+ LI+S NPL KNGKIWTPHR    +     I   
Sbjct: 96  GMNTTLEEASSLQAGTAVTATVEALSALIESGNPLHKNGKIWTPHRPARPDKSEGGIRIL 155

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
            M++DY P+GDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMAKVIEA QRPA+++AP
Sbjct: 156 -MKSDYEPAGDQPTAIRDLVEGLENGDRSQVLLGVTGSGKTFTMAKVIEATQRPAVILAP 214

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHS
Sbjct: 215 NKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHS 274

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           ATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++LL+ LV QQYKR+D
Sbjct: 275 ATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQLLADLVAQQYKRRD 334

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           +   RG+FRV GD+IE+FP+HLED AWR+SMFG++I+ I+EF PLTGQK+ +++++KIYA
Sbjct: 335 MDFTRGSFRVRGDTIELFPAHLEDAAWRISMFGDEIDAITEFDPLTGQKVGDLKSVKIYA 394

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
           NSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR  YD+EMLE TGSCQ 
Sbjct: 395 NSHYVTPRPTLNGAIKSIKEELRLRLAELEKAGRLLEAQRLEQRTRYDIEMLEATGSCQG 454

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSRYLTGR+PG+PPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYG
Sbjct: 455 IENYSRYLTGRDPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYG 514

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ  G+  EQ+IRPTGL+DPPVE+
Sbjct: 515 FRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGGWEMEQSGGVFAEQVIRPTGLIDPPVEV 574

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           RSARTQV+DV  EI   A +G R L TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLER
Sbjct: 575 RSARTQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLER 634

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           IEI+RDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARN
Sbjct: 635 IEILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARN 694

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           V+ KVILYAD +T S++ A++ET RRREKQ+ +N++H I P+SVK +I +++D +   D 
Sbjct: 695 VDGKVILYADQVTGSMKRAMEETGRRREKQMIYNQEHGITPESVKARISDILDSVYERDH 754

Query: 742 ATTNISID-----AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              +IS       A   +L     + HL +L K M  AA +L+FE+AAR+RDEIKRLK++
Sbjct: 755 VRADISGVSGKGFADGGNLVGNNLQTHLNALEKSMRDAAADLDFEKAARLRDEIKRLKAA 814

Query: 797 PYFQGLDD 804
                +DD
Sbjct: 815 E-LAVMDD 821


>gi|15965654|ref|NP_386007.1| excinuclease ABC subunit B [Sinorhizobium meliloti 1021]
 gi|307314058|ref|ZP_07593671.1| excinuclease ABC, B subunit [Sinorhizobium meliloti BL225C]
 gi|307321235|ref|ZP_07600637.1| excinuclease ABC, B subunit [Sinorhizobium meliloti AK83]
 gi|15074835|emb|CAC46480.1| Probable excinuclease ABC subunit B [Sinorhizobium meliloti 1021]
 gi|306893137|gb|EFN23921.1| excinuclease ABC, B subunit [Sinorhizobium meliloti AK83]
 gi|306899180|gb|EFN29819.1| excinuclease ABC, B subunit [Sinorhizobium meliloti BL225C]
          Length = 985

 Score =  989 bits (2556), Expect = 0.0,   Method: Composition-based stats.
 Identities = 520/827 (62%), Positives = 635/827 (76%), Gaps = 25/827 (3%)

Query: 1   MPKKTRSFPKKDSRI-------QSISTRVDDLDYFSFEEKQLEVD-KTMVADAMRRIRSE 52
           M + T++ PKK S         Q+  +        S   KQLE + +    ++ R + S+
Sbjct: 1   MARSTKNSPKKSSAPGGFEEAPQAPLSGTPLSGNVSDWVKQLESEAEASTFESRREVASK 60

Query: 53  AGKHRKNAA---------KRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQ-TMTPS 102
           AG+HRK              M       T +       + + ++ +   +++    +T +
Sbjct: 61  AGRHRKKVEISASKSARGTSMGGTTDPKTRAAAGLNPVAGLDVALEDADKLTSGSGVTAT 120

Query: 103 VQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLK 162
           V+ALA+LI+S NPL K+GK+WTPHR          I   +MQ+DY P+GDQP AIA L+ 
Sbjct: 121 VEALAKLIESGNPLFKDGKLWTPHRPARPEKSEGGIAI-RMQSDYEPAGDQPTAIADLVD 179

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           G+ S E+ Q+LLGVTGSGKTFTMAKVIEA QRPA+++APNK LAAQLYSEFKNFFP NAV
Sbjct: 180 GLTSGERNQVLLGVTGSGKTFTMAKVIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAV 239

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
           EYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATRSLLER+D I+V+SVSCIY
Sbjct: 240 EYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRSLLERDDVIIVASVSCIY 299

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           GIGSVE+Y+ M  Q+ +GD ++Q++LL+ LV QQYKR+D+   RG+FRV GD+IEIFP+H
Sbjct: 300 GIGSVETYTAMTFQMSVGDRLDQRQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAH 359

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
           LED AWR+SMFG++I+ I+EF PLTGQK  +++++KIYANSHYVTPRPTLN A+K IKEE
Sbjct: 360 LEDAAWRISMFGDEIDSITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNAAIKAIKEE 419

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
           +  RL ELE+ GRLLEAQRLEQR  YD+EMLE TGSCQ IENYSRYLTGR PGEPPPTLF
Sbjct: 420 MSQRLAELERAGRLLEAQRLEQRTRYDIEMLEATGSCQGIENYSRYLTGRRPGEPPPTLF 479

Query: 463 EYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLR 522
           EYIP+++L+F+DESHVTIPQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +R
Sbjct: 480 EYIPDNALIFIDESHVTIPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMR 539

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
           P TI VSATPG+WE+EQ  G+  EQ+IRPTGL+DPPVE+RSA+TQV+DV  EI   A  G
Sbjct: 540 PDTIAVSATPGAWEMEQAGGVFAEQVIRPTGLIDPPVEVRSAKTQVDDVLGEIRETAAAG 599

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLL
Sbjct: 600 YRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLL 659

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           REGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYADTIT S+Q A++
Sbjct: 660 REGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADTITGSMQRAME 719

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ-----LSLSK 757
           ET+RRREKQ+ +N +H I P+SVK KI +++D +   D    +IS  A +       L  
Sbjct: 720 ETSRRREKQMAYNAEHGITPESVKAKISDILDSVYERDHVRADISGVAGKGFADGGHLVG 779

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
              +AHL +L KQM  AA +L+FE+AAR+RDEIKRLK++     LDD
Sbjct: 780 NNLQAHLNALEKQMRDAAADLDFEKAARLRDEIKRLKAAE-LAVLDD 825


>gi|150396826|ref|YP_001327293.1| excinuclease ABC subunit B [Sinorhizobium medicae WSM419]
 gi|150028341|gb|ABR60458.1| excinuclease ABC, B subunit [Sinorhizobium medicae WSM419]
          Length = 978

 Score =  988 bits (2554), Expect = 0.0,   Method: Composition-based stats.
 Identities = 512/788 (64%), Positives = 622/788 (78%), Gaps = 18/788 (2%)

Query: 33  KQLEVD-KTMVADAMRRIRSEAGKHRKNAA---------KRMLIHQRENTASKGEFQSQS 82
           KQLE + +    ++ R + S+AG+HRK              M       T +       +
Sbjct: 40  KQLESEAEASTFESRREVASKAGRHRKKVEISASKSARGTSMGGTTDPKTRAAAGLNPVA 99

Query: 83  SISMSEKQTREISEQ-TMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFF 141
            + +S +   +++    +T +V+ALA+LI+S NPL K+GK+WTPHR    +     I   
Sbjct: 100 GLDVSLEDADKLTSGSGVTATVEALAKLIESGNPLFKDGKLWTPHRPARPDKSEGGIAI- 158

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           +MQ+DY P+GDQP AIA L+ G+ S E+ Q+LLGVTGSGKTFTMAKVIEA QRPA+++AP
Sbjct: 159 RMQSDYEPAGDQPTAIADLVGGLASGERNQVLLGVTGSGKTFTMAKVIEATQRPAVILAP 218

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHS
Sbjct: 219 NKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHS 278

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           ATRSLLER+D I+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++LL+ LV QQYKR++
Sbjct: 279 ATRSLLERDDVIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQLLADLVAQQYKRRE 338

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           +   RG+FRV GD+IEIFP+HLED AWR+SMFG++I+ I+EF PLTGQK  +++++KIYA
Sbjct: 339 MDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQKTGDLKSVKIYA 398

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
           NSHYVTPRPTLN A+K IKEEL  RL+ELE+ GRLLEAQRLEQR  YD+EMLE TGSCQ 
Sbjct: 399 NSHYVTPRPTLNAAIKAIKEELSHRLVELERAGRLLEAQRLEQRTRYDIEMLEATGSCQG 458

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSRYLTGR PGEPPPTLFEYIP+D+L+F+DESHVTIPQI GMYRGDF RKATLAEYG
Sbjct: 459 IENYSRYLTGRRPGEPPPTLFEYIPDDALIFIDESHVTIPQIGGMYRGDFRRKATLAEYG 518

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+EQ  G+  EQ+IRPTGL+DP VE+
Sbjct: 519 FRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQSGGVFAEQVIRPTGLIDPAVEV 578

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           RSA+TQV+DV  EI   A  G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLER
Sbjct: 579 RSAKTQVDDVLGEIRETAAAGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLER 638

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           IEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARN
Sbjct: 639 IEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARN 698

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           V+ KVILYADTIT S++ A++ET RRREKQ+ +N +H I P+SVK KI +++D +   D 
Sbjct: 699 VDGKVILYADTITGSMKRAMEETGRRREKQMAYNAEHGITPESVKAKISDILDSVYERDH 758

Query: 742 ATTNISIDAQQ-----LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              +IS  A +       L     +AHL +L KQM  AA +L+FE+AAR+RDEIKRLK++
Sbjct: 759 VRADISGVAGKGFADGGHLVGNNLQAHLNALEKQMRDAAADLDFEKAARLRDEIKRLKAA 818

Query: 797 PYFQGLDD 804
                LDD
Sbjct: 819 E-LAVLDD 825


>gi|239832391|ref|ZP_04680720.1| excinuclease ABC, B subunit [Ochrobactrum intermedium LMG 3301]
 gi|239824658|gb|EEQ96226.1| excinuclease ABC, B subunit [Ochrobactrum intermedium LMG 3301]
          Length = 941

 Score =  988 bits (2554), Expect = 0.0,   Method: Composition-based stats.
 Identities = 498/776 (64%), Positives = 612/776 (78%), Gaps = 20/776 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK------------------GEFQSQS 82
           +AD  + I  EA K R KN  +   I +R   AS+                        +
Sbjct: 40  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERAAAGLNPVA 99

Query: 83  SISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
            + +S +    ++    T +VQAL+ LI S NPL KNG++WTPHR          I   +
Sbjct: 100 GLDISLEDAAGLNPSGATATVQALSDLIASGNPLFKNGELWTPHRPARPEKSEGGIAI-E 158

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMA+VI+  QRPA+++APN
Sbjct: 159 METSFEPSGDQPTAIRDLVEGLENNDRTQVLLGVTGSGKTFTMAQVIQRTQRPALILAPN 218

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 219 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 278

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 279 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 338

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IE+FP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 339 NFVRGSFRVRGDTIELFPAHLEDRAWRISLFGDEIESITEFDPLTGQKTGDLKSVKIYAN 398

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 399 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 458

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGRNPGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 459 ENYSRYLTGRNPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 518

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 519 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 578

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   AQ+G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 579 PAKTQVDDVLGEIRDTAQKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 638

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 639 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 698

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD IT S+Q A+DET+RRREKQ+ +N++H I P SVK+ I +++  +   D  
Sbjct: 699 DGKVILYADNITGSMQRAMDETSRRREKQVAYNEEHGITPASVKKNISDILGSVYERDHV 758

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
             +IS  A++ ++      AHL+ L KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 759 RADISGFAEEGAMMGNNLAAHLEHLEKQMRDAAADLDFEKAARLRDEIKRLRETEL 814


>gi|254730730|ref|ZP_05189308.1| excinuclease ABC subunit B [Brucella abortus bv. 4 str. 292]
 gi|260758452|ref|ZP_05870800.1| excinuclease ABC subunit B [Brucella abortus bv. 4 str. 292]
 gi|260668770|gb|EEX55710.1| excinuclease ABC subunit B [Brucella abortus bv. 4 str. 292]
          Length = 863

 Score =  988 bits (2553), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/810 (62%), Positives = 621/810 (76%), Gaps = 26/810 (3%)

Query: 11  KDSRIQSISTRVD---DLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHR-KNAAKRMLI 66
           KD  I+    + D   +     F    L      +AD  + I  EA K R KN  +   I
Sbjct: 5   KDKHIRDSRNKADGFGEAPQAGFSGAPLSG---TIADWAKEIGDEAAKPRAKNPKQPKKI 61

Query: 67  HQRENTASK------------------GEFQSQSSISMSEKQTREISEQTMTPSVQALAR 108
            +R   AS+                        + + +S ++   +S    T +VQALA 
Sbjct: 62  PERSKEASRTGRGTSMGGAASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALAD 121

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           LIQS NPL K+G++WTPHR          I   +M+T + PSGDQP AI  L++G+ +++
Sbjct: 122 LIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-RMETSFEPSGDQPTAIRDLVEGLENQD 180

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q+LLGVTGSGKTFTMA+VIE  QRPA+++APNK LAAQLY EFK+FFP+NAVEYFVSY
Sbjct: 181 RTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY 240

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 241 YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE 300

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI  +RG+FRV GD+IEIFP+HLED AW
Sbjct: 301 TYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAW 360

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+S+FG++IE I+EF PLTGQK  +++++KIYANSHYVTPRPTLN A+K IKEELK RL 
Sbjct: 361 RISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLD 420

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           EL + GRLLEAQRL+QR T+DLEMLE TGSC  IENYSRYLTGR PGEPPPTLFEYIP++
Sbjct: 421 ELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN 480

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +L+F+DESHVT+PQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI V
Sbjct: 481 ALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAV 540

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR A+TQV+DV  EI   A++G R L+T
Sbjct: 541 SATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIRPAKTQVDDVLGEIRNTAKKGYRTLVT 600

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDI
Sbjct: 601 VLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDI 660

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q AIDET RRR
Sbjct: 661 PECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR 720

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
           EKQ  +N+ H I P SVK+ I +++D +   D    +IS  A++ ++      +H++ L 
Sbjct: 721 EKQQAYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLE 780

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 781 KQMRDAAADLDFEKAARLRDEIKRLRETEL 810


>gi|241205212|ref|YP_002976308.1| excinuclease ABC subunit B [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859102|gb|ACS56769.1| excinuclease ABC, B subunit [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 997

 Score =  985 bits (2547), Expect = 0.0,   Method: Composition-based stats.
 Identities = 508/799 (63%), Positives = 623/799 (77%), Gaps = 29/799 (3%)

Query: 33  KQLEVD-KTMVADAMRRIRSEAGKHRKNAA--------------------KRMLIHQREN 71
           KQLE D +T   +  R+I S+AGKHRK                         M       
Sbjct: 36  KQLEADAETSGVETQRQIASKAGKHRKKVEIAARTKTSDGGVSASKSARGTSMGGSTDPK 95

Query: 72  TASKGEFQSQSSISMSEKQTREI-SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWS 130
           T +       S +  + ++   + +   +T +V+AL+ LI+S NPL KNGKIWTPHR   
Sbjct: 96  TRAAAGLNPVSGMDTTLEEASSLQAGTAVTATVEALSALIESGNPLHKNGKIWTPHRPAR 155

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
            +     I   +MQ+DY P+GDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMAKVIE
Sbjct: 156 PDKSEGGIAI-RMQSDYEPAGDQPTAIRDLVEGLENGDRSQVLLGVTGSGKTFTMAKVIE 214

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
           A QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESS
Sbjct: 215 ATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESS 274

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++LL+
Sbjct: 275 INEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQLLA 334

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV QQYKR+D+   RG+FRV GD+IE+FP+HLED AWR+SMFG++I+ I+EF PLTGQK
Sbjct: 335 DLVAQQYKRRDMDFTRGSFRVRGDTIELFPAHLEDAAWRISMFGDEIDAITEFDPLTGQK 394

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           + +++++KIYANSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR  YD+
Sbjct: 395 VGDLKSVKIYANSHYVTPRPTLNGAIKSIKEELRLRLAELEKAGRLLEAQRLEQRTRYDI 454

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EMLE TGSCQ IENYSRYLTGR+PG+PPPTLFEYIP+++L+F+DESHVT+PQI GMYRGD
Sbjct: 455 EMLEATGSCQGIENYSRYLTGRDPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGD 514

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
           F RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ  G+  EQ+IR
Sbjct: 515 FRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGGWEMEQSGGVFAEQVIR 574

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DPPVE+RSAR+QV+DV  EI   A +G R L TVLTKRMAEDLTEYL+E+ +RVR
Sbjct: 575 PTGLIDPPVEVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVR 634

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           YMHS++ TLERIEI+RDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TS
Sbjct: 635 YMHSDIDTLERIEILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETS 694

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ KVILYAD IT S++ A++ET+RRREKQ+ +N++H I P+SVK +I 
Sbjct: 695 LIQTIGRAARNVDGKVILYADQITGSMKRAMEETSRRREKQMVYNQEHGITPESVKARIN 754

Query: 731 EVIDPILLEDAATTNISID-----AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           +++D +   D    +IS       A   +L     + HL +L K M  AA +L+FE+AAR
Sbjct: 755 DILDSVYERDHVRADISGTSGKGFADGGNLVGNNLQTHLNALEKSMRDAAADLDFEKAAR 814

Query: 786 IRDEIKRLKSSPYFQGLDD 804
           +RDEIKRLK+      +DD
Sbjct: 815 LRDEIKRLKA-VELAAMDD 832


>gi|227822296|ref|YP_002826267.1| excinuclease ABC subunit B [Sinorhizobium fredii NGR234]
 gi|227341296|gb|ACP25514.1| UvrABC system protein B [Sinorhizobium fredii NGR234]
          Length = 994

 Score =  985 bits (2547), Expect = 0.0,   Method: Composition-based stats.
 Identities = 515/797 (64%), Positives = 618/797 (77%), Gaps = 27/797 (3%)

Query: 33  KQLEVD-KTMVADAMRRIRSEAGKHRKNAA------------------KRMLIHQRENTA 73
           KQLE + +T   ++ R I S+AGKHRK                       M       T 
Sbjct: 40  KQLEAEAETSAFESQREIASKAGKHRKKVEITASKAAAKTVAGKTARGTSMGGSHDPKTR 99

Query: 74  SKGEFQSQSSISMSEKQTREISEQ-TMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSIN 132
           +       + + +S +   +++    +T +V+ALA LI+S NPL K+GK+WTPHR    +
Sbjct: 100 AAAGLNPVAGLDVSLEDADKLTTGSGVTATVEALAALIESGNPLFKDGKLWTPHRPARPD 159

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
                I+  +M TDY PSGDQP AIA L+ G+ S E+ Q+LLGVTGSGKTFTMAKVIEA 
Sbjct: 160 KSEGGISL-KMVTDYQPSGDQPTAIADLVDGLSSGERNQVLLGVTGSGKTFTMAKVIEAT 218

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSIN
Sbjct: 219 QRPAVILAPNKTLAAQLYSEFKNFFPENAVEYFVSYYDYYQPEAYVPRSDTYIEKESSIN 278

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           EQIDRMRHSATRSLLER+D ++V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++LL+ L
Sbjct: 279 EQIDRMRHSATRSLLERDDVVIVASVSCIYGIGSVETYTAMTFQMTVGDRLDQRQLLADL 338

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V QQYKR+D+   RG+FRV GD+IEIFP+HLED AWR+SMFG++I+ I+EF PLTGQK  
Sbjct: 339 VAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDAITEFDPLTGQKTG 398

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           +++++KIYANSHYVTPRPTLN A K IK+EL  RL ELE+ GRLLEAQRLEQR  YDLEM
Sbjct: 399 DLKSVKIYANSHYVTPRPTLNAATKAIKDELAHRLTELERAGRLLEAQRLEQRTRYDLEM 458

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           LE TGSCQ IENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVTIPQI GMYRGDF 
Sbjct: 459 LEATGSCQGIENYSRYLTGRKPGEPPPTLFEYIPDNALIFIDESHVTIPQIGGMYRGDFR 518

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ  G+  EQ+IRPT
Sbjct: 519 RKATLAEYGFRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGGWEMEQSGGVFAEQVIRPT 578

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DPPVE+RSA+TQV+DV  EI   A  G R L+TVLTKRMAEDLTEYL+E+ +RVRYM
Sbjct: 579 GLIDPPVEVRSAKTQVDDVLGEIRETAAAGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYM 638

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLI
Sbjct: 639 HSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLI 698

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+ KVILYADTIT S+  A++ET RRREKQ+ +N ++ I P+SVK KI ++
Sbjct: 699 QTIGRAARNVDGKVILYADTITGSMSRAMEETARRREKQMAYNLENGITPESVKAKISDI 758

Query: 733 IDPILLEDAATTNISID-----AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           +D +   D    +IS       A+   L     +AHL +L KQM  AA +L+FE AAR+R
Sbjct: 759 LDSVYERDHVRADISGVAGKGFAEAGHLVGNNLQAHLNALEKQMRDAAADLDFETAARLR 818

Query: 788 DEIKRLKSSPYFQGLDD 804
           DEIKRLK++     LDD
Sbjct: 819 DEIKRLKAAE-LAVLDD 834


>gi|254719547|ref|ZP_05181358.1| excinuclease ABC subunit B [Brucella sp. 83/13]
 gi|265984556|ref|ZP_06097291.1| excinuclease ABC subunit B [Brucella sp. 83/13]
 gi|306838487|ref|ZP_07471328.1| excinuclease ABC, B subunit [Brucella sp. NF 2653]
 gi|264663148|gb|EEZ33409.1| excinuclease ABC subunit B [Brucella sp. 83/13]
 gi|306406451|gb|EFM62689.1| excinuclease ABC, B subunit [Brucella sp. NF 2653]
          Length = 940

 Score =  985 bits (2547), Expect = 0.0,   Method: Composition-based stats.
 Identities = 504/810 (62%), Positives = 622/810 (76%), Gaps = 26/810 (3%)

Query: 11  KDSRIQSISTRVD---DLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHR-KNAAKRMLI 66
           KD  I+    + D   +     F    L      +AD  + I  EA K R KN  +   I
Sbjct: 5   KDKHIRDSRNKADGFGEAPQAGFSGAPLSG---TIADWAKEIGDEAAKPRAKNPKQPKKI 61

Query: 67  HQRENTASK------------------GEFQSQSSISMSEKQTREISEQTMTPSVQALAR 108
            +R   AS+                        + + +S ++   +S    T +VQALA 
Sbjct: 62  PERSKEASRTGRGTSMGGAASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALAD 121

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           LIQS NPL K+G++WTPHR          I   +M+T + PSGDQP AI  L++G+ +++
Sbjct: 122 LIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-RMETSFEPSGDQPTAIRDLVEGLENQD 180

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q+LLGVTGSGKTFTMA+VIE  QRPA+++APNK LAAQLY EFK+FFP+NAVEYFVSY
Sbjct: 181 RTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY 240

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 241 YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE 300

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI  +RG+FRV GD+IEIFP+HLED+AW
Sbjct: 301 TYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDLAW 360

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+S+FG++IE I+EF PLTGQK  +++++KIYANSHYVTPRPTLN A+K IKEELK RL 
Sbjct: 361 RISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKQRLD 420

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           EL + GRLLEAQRL+QR T+DLEMLE TGSC  IENYSRYLTGR PGEPPPTLFEYIP++
Sbjct: 421 ELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN 480

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +L+F+DESHVT+PQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI V
Sbjct: 481 ALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAV 540

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG+WE+E+  G+  EQ+IRPTGL+DPPVE+R A+TQV+DV  EI   A++G R L+T
Sbjct: 541 SATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEVRPAKTQVDDVLGEIRDTAKKGYRTLVT 600

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDI
Sbjct: 601 VLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDI 660

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q AIDET RRR
Sbjct: 661 PECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR 720

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
           EKQ  +N+ H I P SVK+ I +++D +   D    +IS  A++ ++      +H++ L 
Sbjct: 721 EKQQAYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLE 780

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 781 KQMRDAAADLDFEKAARLRDEIKRLRETEL 810


>gi|222086269|ref|YP_002544801.1| excinuclease ABC, B subunit [Agrobacterium radiobacter K84]
 gi|221723717|gb|ACM26873.1| excinuclease ABC, B subunit [Agrobacterium radiobacter K84]
          Length = 944

 Score =  985 bits (2546), Expect = 0.0,   Method: Composition-based stats.
 Identities = 506/787 (64%), Positives = 621/787 (78%), Gaps = 18/787 (2%)

Query: 33  KQLEVD-KTMVADAMRRIRSEAGKHRKNAA---------KRMLIHQRENTASKGEFQSQS 82
           KQLE + +T   +  R+I S+AGKHRK              M       T +       S
Sbjct: 36  KQLESEAETSGIETQRQIASKAGKHRKKVEIAASKSGRGTSMGGSTDPKTRAAAGLNPVS 95

Query: 83  SISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
            +  S +   + +   +T +V+AL+ LI+S NPL K+GK+WTPHR    N     I   +
Sbjct: 96  GMDTSLENAAD-AGTAVTATVEALSALIESGNPLFKDGKLWTPHRPARPNKSEGGIPI-R 153

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M +DY P+GDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMAKVIEA QRPA+++APN
Sbjct: 154 MVSDYEPAGDQPTAIRDLVEGLDNGDRSQVLLGVTGSGKTFTMAKVIEATQRPAVILAPN 213

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRHSA
Sbjct: 214 KTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSA 273

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++LL+ LV QQYKR+D+
Sbjct: 274 TRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMNVGDRLDQRQLLADLVAQQYKRRDM 333

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             IRG+FRV GD+IEIFP+HLED AWR+SMFG++I+ I+EF PLTGQK  +++++KIYAN
Sbjct: 334 DFIRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDAITEFDPLTGQKTGDLKSVKIYAN 393

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+++IKEELK+RL ELEK GRLLEAQRLEQR  YD+EMLE TGSC  I
Sbjct: 394 SHYVTPRPTLNGAIRHIKEELKIRLAELEKAGRLLEAQRLEQRTRYDVEMLEATGSCAGI 453

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGRNPGEPPPTLFEYIP+++LLF+DESHV++ QI GMYRGDF RKATLAEYGF
Sbjct: 454 ENYSRYLTGRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAEYGF 513

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE++Q  G+  EQ+IRPTGL+DPPVE+R
Sbjct: 514 RLPSCMDNRPLRFEEWDAMRPDTIAVSATPGAWEMDQSGGVFAEQVIRPTGLIDPPVEVR 573

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           SAR+QV+DV  EI   A +G R L TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 574 SARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 633

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 634 EIIRDLRLGAFDVLVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNV 693

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD IT S++ A++ET+RRREKQ+ +N ++ I P+SVK +I +++D +  +D  
Sbjct: 694 DGKVILYADNITGSMKRAMEETSRRREKQMVYNTENGITPESVKARISDILDSVYEKDHV 753

Query: 743 TTNI-----SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             +I        A    L     +AHL +L K M  AA +L+FE+AAR+RDEIKRLK++ 
Sbjct: 754 RADIGGVSGKGFADGGHLVGNNLQAHLNALEKAMRDAAADLDFEKAARLRDEIKRLKAAE 813

Query: 798 YFQGLDD 804
               +DD
Sbjct: 814 -LAVMDD 819


>gi|189024626|ref|YP_001935394.1| excinuclease ABC subunit B [Brucella abortus S19]
 gi|260546937|ref|ZP_05822676.1| excinuclease ABC subunit B [Brucella abortus NCTC 8038]
 gi|189020198|gb|ACD72920.1| excinuclease ABC subunit B [Brucella abortus S19]
 gi|260095987|gb|EEW79864.1| excinuclease ABC subunit B [Brucella abortus NCTC 8038]
          Length = 940

 Score =  985 bits (2546), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/810 (62%), Positives = 621/810 (76%), Gaps = 26/810 (3%)

Query: 11  KDSRIQSISTRVD---DLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHR-KNAAKRMLI 66
           KD  I+    + D   +     F    L      +AD  + I  EA K R KN  +   I
Sbjct: 5   KDKHIRDSRNKADGFGEAPQAGFSGAPLSG---TIADWAKEIGDEAAKPRAKNPKQPKKI 61

Query: 67  HQRENTASK------------------GEFQSQSSISMSEKQTREISEQTMTPSVQALAR 108
            +R   AS+                        + + +S ++   +S    T +VQALA 
Sbjct: 62  PERSKEASRTGRGTSMGGAASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALAN 121

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           LIQS NPL K+G++WTPHR          I   +M+T + PSGDQP AI  L++G+ +++
Sbjct: 122 LIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-RMETSFEPSGDQPTAIRDLVEGLENQD 180

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q+LLGVTGSGKTFTMA+VIE  QRPA+++APNK LAAQLY EFK+FFP+NAVEYFVSY
Sbjct: 181 RTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY 240

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 241 YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE 300

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI  +RG+FRV GD+IEIFP+HLED AW
Sbjct: 301 TYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAW 360

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+S+FG++IE I+EF PLTGQK  +++++KIYANSHYVTPRPTLN A+K IKEELK RL 
Sbjct: 361 RISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLD 420

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           EL + GRLLEAQRL+QR T+DLEMLE TGSC  IENYSRYLTGR PGEPPPTLFEYIP++
Sbjct: 421 ELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN 480

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +L+F+DESHVT+PQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI V
Sbjct: 481 ALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAV 540

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR A+TQV+DV  EI   A++G R L+T
Sbjct: 541 SATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIRPAKTQVDDVLGEIRNTAKKGYRTLVT 600

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDI
Sbjct: 601 VLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDI 660

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q AIDET RRR
Sbjct: 661 PECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR 720

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
           EKQ  +N+ H I P SVK+ I +++D +   D    +IS  A++ ++      +H++ L 
Sbjct: 721 EKQQAYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLE 780

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 781 KQMRDAAADLDFEKAARLRDEIKRLRETEL 810


>gi|62290400|ref|YP_222193.1| excinuclease ABC subunit B [Brucella abortus bv. 1 str. 9-941]
 gi|82700322|ref|YP_414896.1| excinuclease ABC subunit B [Brucella melitensis biovar Abortus
           2308]
 gi|237815904|ref|ZP_04594901.1| excinuclease ABC, B subunit [Brucella abortus str. 2308 A]
 gi|254697840|ref|ZP_05159668.1| excinuclease ABC subunit B [Brucella abortus bv. 2 str. 86/8/59]
 gi|256257948|ref|ZP_05463484.1| excinuclease ABC subunit B [Brucella abortus bv. 9 str. C68]
 gi|260762278|ref|ZP_05874621.1| excinuclease ABC subunit B [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884246|ref|ZP_05895860.1| excinuclease ABC subunit B [Brucella abortus bv. 9 str. C68]
 gi|297248785|ref|ZP_06932503.1| excinuclease ABC subunit B [Brucella abortus bv. 5 str. B3196]
 gi|62196532|gb|AAX74832.1| UvrB, excinuclease ABC, B subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82616423|emb|CAJ11486.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
           motif A (P-loop):UvrB/UvrC protein:Excinuclease ABC, B
           subunit [Brucella melitensis biovar Abortus 2308]
 gi|237789202|gb|EEP63413.1| excinuclease ABC, B subunit [Brucella abortus str. 2308 A]
 gi|260672710|gb|EEX59531.1| excinuclease ABC subunit B [Brucella abortus bv. 2 str. 86/8/59]
 gi|260873774|gb|EEX80843.1| excinuclease ABC subunit B [Brucella abortus bv. 9 str. C68]
 gi|297175954|gb|EFH35301.1| excinuclease ABC subunit B [Brucella abortus bv. 5 str. B3196]
          Length = 940

 Score =  984 bits (2545), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/810 (62%), Positives = 621/810 (76%), Gaps = 26/810 (3%)

Query: 11  KDSRIQSISTRVD---DLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHR-KNAAKRMLI 66
           KD  I+    + D   +     F    L      +AD  + I  EA K R KN  +   I
Sbjct: 5   KDKHIRDSRNKADGFGEAPQAGFSGAPLSG---TIADWAKEIGDEAAKPRAKNPKQPKKI 61

Query: 67  HQRENTASK------------------GEFQSQSSISMSEKQTREISEQTMTPSVQALAR 108
            +R   AS+                        + + +S ++   +S    T +VQALA 
Sbjct: 62  PERSKEASRTGRGTSMGGAASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALAD 121

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           LIQS NPL K+G++WTPHR          I   +M+T + PSGDQP AI  L++G+ +++
Sbjct: 122 LIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-RMETSFEPSGDQPTAIRDLVEGLENQD 180

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q+LLGVTGSGKTFTMA+VIE  QRPA+++APNK LAAQLY EFK+FFP+NAVEYFVSY
Sbjct: 181 RTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY 240

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 241 YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE 300

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI  +RG+FRV GD+IEIFP+HLED AW
Sbjct: 301 TYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAW 360

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+S+FG++IE I+EF PLTGQK  +++++KIYANSHYVTPRPTLN A+K IKEELK RL 
Sbjct: 361 RISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLD 420

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           EL + GRLLEAQRL+QR T+DLEMLE TGSC  IENYSRYLTGR PGEPPPTLFEYIP++
Sbjct: 421 ELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN 480

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +L+F+DESHVT+PQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI V
Sbjct: 481 ALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAV 540

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR A+TQV+DV  EI   A++G R L+T
Sbjct: 541 SATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIRPAKTQVDDVLGEIRNTAKKGYRTLVT 600

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDI
Sbjct: 601 VLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDI 660

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q AIDET RRR
Sbjct: 661 PECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR 720

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
           EKQ  +N+ H I P SVK+ I +++D +   D    +IS  A++ ++      +H++ L 
Sbjct: 721 EKQQAYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLE 780

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 781 KQMRDAAADLDFEKAARLRDEIKRLRETEL 810


>gi|260565267|ref|ZP_05835751.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. 16M]
 gi|260151335|gb|EEW86429.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. 16M]
          Length = 940

 Score =  984 bits (2545), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/810 (62%), Positives = 621/810 (76%), Gaps = 26/810 (3%)

Query: 11  KDSRIQSISTRVD---DLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHR-KNAAKRMLI 66
           KD  I+    + D   +     F    L      +AD  + I  EA K R KN  +   I
Sbjct: 5   KDKHIRDSRNKADGFGEAPQAGFSGAPLSG---TIADWAKEIGDEAAKPRAKNPKQPKKI 61

Query: 67  HQRENTASK------------------GEFQSQSSISMSEKQTREISEQTMTPSVQALAR 108
            +R   AS+                        + + +S ++   +S    T +VQALA 
Sbjct: 62  PERSKEASRTGRGTSMGGAASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALAD 121

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           LIQS NPL K+G++WTPHR          I   +M+T + PSGDQP AI  L++G+ +++
Sbjct: 122 LIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-RMETSFEPSGDQPTAIRDLVEGLENQD 180

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q+LLGVTGSGKTFTMA+VIE  QRPA+++APNK LAAQLY EFK+FFP+NAVEYFVSY
Sbjct: 181 RTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY 240

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 241 YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE 300

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI  +RG+FRV GD+IEIFP+HLED AW
Sbjct: 301 TYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAW 360

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+S+FG++IE I+EF PLTGQK  +++++KIYANSHYVTPRPTLN A+K IKEELK RL 
Sbjct: 361 RISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLD 420

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           EL + GRLLEAQRL+QR T+DLEMLE TGSC  IENYSRYLTGR PGEPPPTLFEYIP++
Sbjct: 421 ELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN 480

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +L+F+DESHVT+PQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI V
Sbjct: 481 ALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAV 540

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR A+TQV+DV  EI   A++G R L+T
Sbjct: 541 SATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIRPAKTQVDDVLGEIRDTAKKGYRTLVT 600

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDI
Sbjct: 601 VLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDI 660

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q AIDET RRR
Sbjct: 661 PECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR 720

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
           EKQ  +N+ H I P SVK+ I +++D +   D    +IS  A++ ++      +H++ L 
Sbjct: 721 EKQQAYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLE 780

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 781 KQMRDAAADLDFEKAARLRDEIKRLRETEL 810


>gi|23502381|ref|NP_698508.1| excinuclease ABC subunit B [Brucella suis 1330]
 gi|23348365|gb|AAN30423.1| excinuclease ABC, B subunit [Brucella suis 1330]
          Length = 940

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/810 (62%), Positives = 621/810 (76%), Gaps = 26/810 (3%)

Query: 11  KDSRIQSISTRVD---DLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHR-KNAAKRMLI 66
           KD  I+    + D   +     F    L      +AD  + I  EA K R KN  +   I
Sbjct: 5   KDKHIRDSRNKADGFGEAPQAGFSGAPLSG---TIADWAKEIGDEAAKPRAKNPKQPKKI 61

Query: 67  HQRENTASK------------------GEFQSQSSISMSEKQTREISEQTMTPSVQALAR 108
            +R   AS+                        + + +S ++   +S    T +VQALA 
Sbjct: 62  PERSKEASRTGRGTSMGGAASVKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALAN 121

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           LIQS NPL K+G++WTPHR          I   +M+T + PSGDQP AI  L++G+ +++
Sbjct: 122 LIQSGNPLFKHGELWTPHRPVRPEKSEGGIPI-RMETSFEPSGDQPTAIRDLVEGLENQD 180

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q+LLGVTGSGKTFTMA+VIE  QRPA+++APNK LAAQLY EFK+FFP+NAVEYFVSY
Sbjct: 181 RTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY 240

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 241 YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE 300

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI  +RG+FRV GD+IEIFP+HLED AW
Sbjct: 301 TYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAW 360

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+S+FG++IE I+EF PLTGQK  +++++KIYANSHYVTPRPTLN A+K IKEELK RL 
Sbjct: 361 RISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLD 420

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           EL + GRLLEAQRL+QR T+DLEMLE TGSC  IENYSRYLTGR PGEPPPTLFEYIP++
Sbjct: 421 ELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN 480

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +L+F+DESHVT+PQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI V
Sbjct: 481 ALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAV 540

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR A+TQV+DV  EI   A++G R L+T
Sbjct: 541 SATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIRPAKTQVDDVLGEIRDTAKKGYRTLVT 600

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDI
Sbjct: 601 VLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDI 660

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q AIDET RRR
Sbjct: 661 PECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR 720

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
           EKQ  +N+ H I P SVK+ I +++D +   D    +IS  A++ ++      +H++ L 
Sbjct: 721 EKQQAYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLE 780

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 781 KQMRDAAADLDFEKAARLRDEIKRLRETEL 810


>gi|225627954|ref|ZP_03785990.1| excinuclease ABC, B subunit [Brucella ceti str. Cudo]
 gi|254694187|ref|ZP_05156015.1| excinuclease ABC subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|254702229|ref|ZP_05164057.1| excinuclease ABC subunit B [Brucella suis bv. 5 str. 513]
 gi|254708177|ref|ZP_05170005.1| excinuclease ABC subunit B [Brucella pinnipedialis M163/99/10]
 gi|254710548|ref|ZP_05172359.1| excinuclease ABC subunit B [Brucella pinnipedialis B2/94]
 gi|256032042|ref|ZP_05445656.1| excinuclease ABC subunit B [Brucella pinnipedialis M292/94/1]
 gi|256114068|ref|ZP_05454838.1| excinuclease ABC subunit B [Brucella melitensis bv. 3 str. Ether]
 gi|256160238|ref|ZP_05457932.1| excinuclease ABC subunit B [Brucella ceti M490/95/1]
 gi|256255444|ref|ZP_05460980.1| excinuclease ABC subunit B [Brucella ceti B1/94]
 gi|260169177|ref|ZP_05755988.1| excinuclease ABC subunit B [Brucella sp. F5/99]
 gi|261214495|ref|ZP_05928776.1| excinuclease ABC subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|261222651|ref|ZP_05936932.1| excinuclease ABC subunit B [Brucella ceti B1/94]
 gi|261315685|ref|ZP_05954882.1| excinuclease ABC subunit B [Brucella pinnipedialis M163/99/10]
 gi|261318123|ref|ZP_05957320.1| excinuclease ABC subunit B [Brucella pinnipedialis B2/94]
 gi|261752803|ref|ZP_05996512.1| excinuclease ABC subunit B [Brucella suis bv. 5 str. 513]
 gi|261758692|ref|ZP_06002401.1| excinuclease ABC subunit B [Brucella sp. F5/99]
 gi|265989153|ref|ZP_06101710.1| excinuclease ABC subunit B [Brucella pinnipedialis M292/94/1]
 gi|265995404|ref|ZP_06107961.1| excinuclease ABC subunit B [Brucella melitensis bv. 3 str. Ether]
 gi|265998615|ref|ZP_06111172.1| excinuclease ABC subunit B [Brucella ceti M490/95/1]
 gi|306843141|ref|ZP_07475761.1| excinuclease ABC, B subunit [Brucella sp. BO2]
 gi|306844513|ref|ZP_07477102.1| excinuclease ABC, B subunit [Brucella sp. BO1]
 gi|225617117|gb|EEH14163.1| excinuclease ABC, B subunit [Brucella ceti str. Cudo]
 gi|260916102|gb|EEX82963.1| excinuclease ABC subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|260921235|gb|EEX87888.1| excinuclease ABC subunit B [Brucella ceti B1/94]
 gi|261297346|gb|EEY00843.1| excinuclease ABC subunit B [Brucella pinnipedialis B2/94]
 gi|261304711|gb|EEY08208.1| excinuclease ABC subunit B [Brucella pinnipedialis M163/99/10]
 gi|261738676|gb|EEY26672.1| excinuclease ABC subunit B [Brucella sp. F5/99]
 gi|261742556|gb|EEY30482.1| excinuclease ABC subunit B [Brucella suis bv. 5 str. 513]
 gi|262553239|gb|EEZ09073.1| excinuclease ABC subunit B [Brucella ceti M490/95/1]
 gi|262766517|gb|EEZ12306.1| excinuclease ABC subunit B [Brucella melitensis bv. 3 str. Ether]
 gi|264661350|gb|EEZ31611.1| excinuclease ABC subunit B [Brucella pinnipedialis M292/94/1]
 gi|306275124|gb|EFM56880.1| excinuclease ABC, B subunit [Brucella sp. BO1]
 gi|306286664|gb|EFM58222.1| excinuclease ABC, B subunit [Brucella sp. BO2]
          Length = 940

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/810 (62%), Positives = 621/810 (76%), Gaps = 26/810 (3%)

Query: 11  KDSRIQSISTRVD---DLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHR-KNAAKRMLI 66
           KD  I+    + D   +     F    L      +AD  + I  EA K R KN  +   I
Sbjct: 5   KDKHIRDSRNKADGFGEAPQAGFSGAPLSG---TIADWAKEIGDEAAKPRAKNPKQPKKI 61

Query: 67  HQRENTASK------------------GEFQSQSSISMSEKQTREISEQTMTPSVQALAR 108
            +R   AS+                        + + +S ++   +S    T +VQALA 
Sbjct: 62  PERSKEASRTGRGTSMGGAASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALAD 121

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           LIQS NPL K+G++WTPHR          I   +M+T + PSGDQP AI  L++G+ +++
Sbjct: 122 LIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-RMETSFEPSGDQPTAIRDLVEGLENQD 180

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q+LLGVTGSGKTFTMA+VIE  QRPA+++APNK LAAQLY EFK+FFP+NAVEYFVSY
Sbjct: 181 RTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY 240

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 241 YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE 300

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI  +RG+FRV GD+IEIFP+HLED AW
Sbjct: 301 TYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAW 360

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+S+FG++IE I+EF PLTGQK  +++++KIYANSHYVTPRPTLN A+K IKEELK RL 
Sbjct: 361 RISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLD 420

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           EL + GRLLEAQRL+QR T+DLEMLE TGSC  IENYSRYLTGR PGEPPPTLFEYIP++
Sbjct: 421 ELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN 480

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +L+F+DESHVT+PQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI V
Sbjct: 481 ALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAV 540

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR A+TQV+DV  EI   A++G R L+T
Sbjct: 541 SATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIRPAKTQVDDVLGEIRDTAKKGYRTLVT 600

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDI
Sbjct: 601 VLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDI 660

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q AIDET RRR
Sbjct: 661 PECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR 720

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
           EKQ  +N+ H I P SVK+ I +++D +   D    +IS  A++ ++      +H++ L 
Sbjct: 721 EKQQAYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLE 780

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 781 KQMRDAAADLDFEKAARLRDEIKRLRETEL 810


>gi|163843766|ref|YP_001628170.1| excinuclease ABC subunit B [Brucella suis ATCC 23445]
 gi|163674489|gb|ABY38600.1| excinuclease ABC, B subunit [Brucella suis ATCC 23445]
          Length = 940

 Score =  984 bits (2543), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/810 (62%), Positives = 621/810 (76%), Gaps = 26/810 (3%)

Query: 11  KDSRIQSISTRVD---DLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHR-KNAAKRMLI 66
           KD  I+    + D   +     F    L      +AD  + I  EA K R KN  +   I
Sbjct: 5   KDKHIRDSRNKADGFGEAPQAGFSGAPLSG---TIADWAKEIGDEAAKPRAKNPKQPKKI 61

Query: 67  HQRENTASK------------------GEFQSQSSISMSEKQTREISEQTMTPSVQALAR 108
            +R   AS+                        + + +S ++   +S    T +VQALA 
Sbjct: 62  PERSKEASRTGRGTSMGGAASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALAD 121

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           LIQS NPL K+G++WTPHR          I   +M+T + PSGDQP AI  L++G+ +++
Sbjct: 122 LIQSGNPLFKHGELWTPHRPVRPEKSEGGIPI-RMETSFEPSGDQPTAIRDLVEGLENQD 180

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q+LLGVTGSGKTFTMA+VIE  QRPA+++APNK LAAQLY EFK+FFP+NAVEYFVSY
Sbjct: 181 RTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY 240

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 241 YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE 300

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI  +RG+FRV GD+IEIFP+HLED AW
Sbjct: 301 TYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAW 360

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+S+FG++IE I+EF PLTGQK  +++++KIYANSHYVTPRPTLN A+K IKEELK RL 
Sbjct: 361 RISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLD 420

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           EL + GRLLEAQRL+QR T+DLEMLE TGSC  IENYSRYLTGR PGEPPPTLFEYIP++
Sbjct: 421 ELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN 480

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +L+F+DESHVT+PQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI V
Sbjct: 481 ALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAV 540

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR A+TQV+DV  EI   A++G R L+T
Sbjct: 541 SATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIRPAKTQVDDVLGEIRDTAKKGYRTLVT 600

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDI
Sbjct: 601 VLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDI 660

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q AIDET RRR
Sbjct: 661 PECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR 720

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
           EKQ  +N+ H I P SVK+ I +++D +   D    +IS  A++ ++      +H++ L 
Sbjct: 721 EKQQAYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLE 780

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 781 KQMRDAAADLDFEKAARLRDEIKRLRETEL 810


>gi|254689697|ref|ZP_05152951.1| excinuclease ABC subunit B [Brucella abortus bv. 6 str. 870]
 gi|260755232|ref|ZP_05867580.1| excinuclease ABC subunit B [Brucella abortus bv. 6 str. 870]
 gi|260675340|gb|EEX62161.1| excinuclease ABC subunit B [Brucella abortus bv. 6 str. 870]
          Length = 940

 Score =  983 bits (2542), Expect = 0.0,   Method: Composition-based stats.
 Identities = 504/810 (62%), Positives = 620/810 (76%), Gaps = 26/810 (3%)

Query: 11  KDSRIQSISTRVD---DLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHR-KNAAKRMLI 66
           KD  I+    + D   +     F    L      +AD  + I  EA K R KN  +   I
Sbjct: 5   KDKHIRDSRNKADGFGEAPQAGFSGAPLSG---TIADWAKEIGDEAAKPRAKNPKQPKKI 61

Query: 67  HQRENTASK------------------GEFQSQSSISMSEKQTREISEQTMTPSVQALAR 108
            +R   AS+                        + + +S ++   +S    T +VQALA 
Sbjct: 62  PERSKEASRTGRGTSMGGAASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALAD 121

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           LIQS NPL K+G++WTPHR          I   +M+T + PSGDQP AI  L++G+ +++
Sbjct: 122 LIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-RMETSFEPSGDQPTAIRDLVEGLENQD 180

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q+LLGVTGSGKTFTMA+VIE  QRPA+++APNK LAAQLY EFK+FFP+NAVEYFVSY
Sbjct: 181 RTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY 240

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 241 YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE 300

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI  +RG+FRV GD+IEIFP+HLED AW
Sbjct: 301 TYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAW 360

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+S+FG++IE I+EF PLTGQK  +++++KIYANSHYVTPRPTLN A+K IKEELK RL 
Sbjct: 361 RISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLD 420

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           EL + GRLLEAQRL+QR T+DLEMLE TGSC  IENYSRYLTGR PGEPPPTLFEYIP++
Sbjct: 421 ELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN 480

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +L+F+DESHVT+PQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI V
Sbjct: 481 ALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAV 540

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG+WE+E+  G+  EQ+IRPTGL+DPPVEI  A+TQV+DV  EI   A++G R L+T
Sbjct: 541 SATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIHPAKTQVDDVLGEIRNTAKKGYRTLVT 600

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDI
Sbjct: 601 VLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDI 660

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q AIDET RRR
Sbjct: 661 PECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR 720

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
           EKQ  +N+ H I P SVK+ I +++D +   D    +IS  A++ ++      +H++ L 
Sbjct: 721 EKQQAYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLE 780

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 781 KQMRDAAADLDFEKAARLRDEIKRLRETEL 810


>gi|225852990|ref|YP_002733223.1| excinuclease ABC subunit B [Brucella melitensis ATCC 23457]
 gi|256263530|ref|ZP_05466062.1| excinuclease ABC subunit B [Brucella melitensis bv. 2 str. 63/9]
 gi|225641355|gb|ACO01269.1| excinuclease ABC, B subunit [Brucella melitensis ATCC 23457]
 gi|263093558|gb|EEZ17583.1| excinuclease ABC subunit B [Brucella melitensis bv. 2 str. 63/9]
 gi|326409529|gb|ADZ66594.1| excinuclease ABC subunit B [Brucella melitensis M28]
 gi|326539237|gb|ADZ87452.1| excinuclease ABC, B subunit [Brucella melitensis M5-90]
          Length = 940

 Score =  983 bits (2542), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/810 (62%), Positives = 621/810 (76%), Gaps = 26/810 (3%)

Query: 11  KDSRIQSISTRVD---DLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHR-KNAAKRMLI 66
           KD  I+    + D   +     F    L      +AD  + I  EA K R KN  +   I
Sbjct: 5   KDKHIRDSRNKADGFGEAPQAGFSGAPLSG---TIADWAKEIGDEAAKPRAKNPKQPKKI 61

Query: 67  HQRENTASK------------------GEFQSQSSISMSEKQTREISEQTMTPSVQALAR 108
            +R   AS+                        + + +S ++   +S    T +VQALA 
Sbjct: 62  PERSKEASRTGRGTSMGGAASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALAD 121

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           LIQS NPL K+G++WTPHR          I   +M+T + PSGDQP AI  L++G+ +++
Sbjct: 122 LIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-RMETSFEPSGDQPTAIRDLVEGLENQD 180

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q+LLGVTGSGKTFTMA+VIE  QRPA+++APNK LAAQLY EFK+FFP+NAVEYFVSY
Sbjct: 181 RTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY 240

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 241 YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE 300

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI  +RG+FRV GD+IEIFP+HLED AW
Sbjct: 301 TYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAW 360

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+S+FG++IE I+EF PLTGQK  +++++KIYANSHYVTPRPTLN A+K IKEELK RL 
Sbjct: 361 RISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLD 420

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           EL + GRLLEAQRL+QR T+DLEMLE TGSC  IENYSRYLTGR PGEPPPTLFEYIP++
Sbjct: 421 ELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN 480

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +L+F+DESHVT+PQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI V
Sbjct: 481 ALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAV 540

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR A+TQV+DV  EI   A++G R L+T
Sbjct: 541 SATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIRPAKTQVDDVLGEIRDTAKKGYRTLVT 600

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDI
Sbjct: 601 VLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDI 660

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q AIDET RRR
Sbjct: 661 PECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR 720

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
           EKQ  +N+ H I P SVK+ I +++D +   D    +IS  A++ ++      +H++ L 
Sbjct: 721 EKQQAYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLE 780

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 781 KQMRDAAADLDFEKAARLRDEIKRLRETEL 810


>gi|256061564|ref|ZP_05451706.1| excinuclease ABC subunit B [Brucella neotomae 5K33]
 gi|261325573|ref|ZP_05964770.1| excinuclease ABC subunit B [Brucella neotomae 5K33]
 gi|261301553|gb|EEY05050.1| excinuclease ABC subunit B [Brucella neotomae 5K33]
          Length = 940

 Score =  983 bits (2542), Expect = 0.0,   Method: Composition-based stats.
 Identities = 504/810 (62%), Positives = 621/810 (76%), Gaps = 26/810 (3%)

Query: 11  KDSRIQSISTRVD---DLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHR-KNAAKRMLI 66
           KD  I+    + D   +     F    L      +AD  + I  EA K R KN  +   I
Sbjct: 5   KDKHIRDSRNKADGFGEAPQAGFSGAPLSG---TIADWAKEIGDEAAKPRAKNPKQPKKI 61

Query: 67  HQRENTASK------------------GEFQSQSSISMSEKQTREISEQTMTPSVQALAR 108
            +R   AS+                        + + +S ++   +S    T +VQALA 
Sbjct: 62  PERSKEASRTGRGTSMGGAASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALAD 121

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           LIQS NPL K+G++WTPHR          I   +M+T + PSGDQP AI  L++G+ +++
Sbjct: 122 LIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-RMETSFEPSGDQPTAIRDLVEGLENQD 180

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q+LLGVTGSGKTFTMA+VIE  QRPA+++APNK LAAQLY EFK+FFP+NAVEYFVSY
Sbjct: 181 RTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY 240

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 241 YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE 300

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI  +RG+FRV GD+IEIFP+HLED AW
Sbjct: 301 TYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAW 360

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+S+FG++IE I+EF PLTGQK  +++++KIYANSHYVTPRPTLN A+K IKEELK RL 
Sbjct: 361 RISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLD 420

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           EL + GRLLEAQRL+QR T+DLEMLE TGSC  IENYSRYLTGR PGEPPPTLFEYIP++
Sbjct: 421 ELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN 480

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +L+F+DESHV++PQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI V
Sbjct: 481 ALVFIDESHVSVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAV 540

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR A+TQV+DV  EI   A++G R L+T
Sbjct: 541 SATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIRPAKTQVDDVLGEIRDTAKKGYRTLVT 600

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDI
Sbjct: 601 VLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDI 660

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q AIDET RRR
Sbjct: 661 PECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR 720

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
           EKQ  +N+ H I P SVK+ I +++D +   D    +IS  A++ ++      +H++ L 
Sbjct: 721 EKQQAYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLE 780

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 781 KQMRDAAADLDFEKAARLRDEIKRLRETEL 810


>gi|17986784|ref|NP_539418.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. 16M]
 gi|17982414|gb|AAL51682.1| excinuclease abc subunit b [Brucella melitensis bv. 1 str. 16M]
          Length = 909

 Score =  983 bits (2542), Expect = 0.0,   Method: Composition-based stats.
 Identities = 499/776 (64%), Positives = 612/776 (78%), Gaps = 20/776 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASK------------------GEFQSQS 82
           +AD  + I  EA K R KN  +   I +R   AS+                        +
Sbjct: 5   IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRTGRGTSMGGAASAKERTAAGLNPVA 64

Query: 83  SISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
            + +S ++   +S    T +VQALA LIQS NPL K+G++WTPHR          I   +
Sbjct: 65  GLDISLEEAAGLSPSGATATVQALADLIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-R 123

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  L++G+ ++++ Q+LLGVTGSGKTFTMA+VIE  QRPA+++APN
Sbjct: 124 METSFEPSGDQPTAIRDLVEGLENQDRTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPN 183

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 184 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 243

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 244 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 303

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 304 NFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 363

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 364 SHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 423

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 424 ENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 483

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 484 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIR 543

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 544 PAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 603

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 604 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 663

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D  
Sbjct: 664 DGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDHV 723

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
             +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 724 RADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRETEL 779


>gi|294852830|ref|ZP_06793503.1| excinuclease ABC subunit B [Brucella sp. NVSL 07-0026]
 gi|294821419|gb|EFG38418.1| excinuclease ABC subunit B [Brucella sp. NVSL 07-0026]
          Length = 940

 Score =  983 bits (2541), Expect = 0.0,   Method: Composition-based stats.
 Identities = 504/810 (62%), Positives = 621/810 (76%), Gaps = 26/810 (3%)

Query: 11  KDSRIQSISTRVD---DLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHR-KNAAKRMLI 66
           KD  I+    + D   +     F    L      +AD  + I  EA K R KN  +   I
Sbjct: 5   KDKHIRDSRNKADGFGEAPQAGFSGAPLSG---TIADWAKEIGDEAAKPRAKNPKQPKKI 61

Query: 67  HQRENTASK------------------GEFQSQSSISMSEKQTREISEQTMTPSVQALAR 108
            +R   AS+                        + + +S ++   +S    T +VQALA 
Sbjct: 62  PERSKEASRTGRGTSMGGAASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALAD 121

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           LIQS NPL K+G++WTPHR          I   +M+T + PSGDQP AI  L++G+ +++
Sbjct: 122 LIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-RMETSFEPSGDQPTAIRDLMEGLENQD 180

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q+LLGVTGSGKTFTMA+VIE  QRPA+++APNK LAAQLY EFK+FFP+NAVEYFVSY
Sbjct: 181 RTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY 240

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 241 YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE 300

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI  +RG+FRV GD+IEIFP+HLED AW
Sbjct: 301 TYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAW 360

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+S+FG++IE I+EF PLTGQK  +++++KIYANSHYVTPRPTLN A+K IKEELK RL 
Sbjct: 361 RISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLD 420

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           EL + GRLLEAQRL+QR T+DLEMLE TGSC  IENYSRYLTGR PGEPPPTLFEYIP++
Sbjct: 421 ELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN 480

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +L+F+DESHVT+PQI GMYRGDF RKATLAEYGFRLPSC+DNRPLRFEEW+ +RP TI V
Sbjct: 481 ALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCIDNRPLRFEEWDAMRPQTIAV 540

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR A+TQV+DV  EI   A++G R L+T
Sbjct: 541 SATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIRPAKTQVDDVLGEIRDTAKKGYRTLVT 600

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDI
Sbjct: 601 VLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDI 660

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q AIDET RRR
Sbjct: 661 PECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR 720

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
           EKQ  +N+ H I P SVK+ I +++D +   D    +IS  A++ ++      +H++ L 
Sbjct: 721 EKQQAYNEAHGITPASVKKNISDILDSVYEHDHVRADISGFAEEGAMMGNNLASHVEYLE 780

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 781 KQMRDAAADLDFEKAARLRDEIKRLRETEL 810


>gi|256369928|ref|YP_003107439.1| excinuclease ABC subunit B [Brucella microti CCM 4915]
 gi|256000091|gb|ACU48490.1| excinuclease ABC subunit B [Brucella microti CCM 4915]
          Length = 940

 Score =  983 bits (2541), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/810 (62%), Positives = 621/810 (76%), Gaps = 26/810 (3%)

Query: 11  KDSRIQSISTRVD---DLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHR-KNAAKRMLI 66
           KD  I+    + D   +     F    L      +AD  + I  EA K R KN  +   I
Sbjct: 5   KDKHIRDSRNKADGFGEAPQAGFSGAPLSG---TIADWAKEIGDEAAKPRAKNPKQPKKI 61

Query: 67  HQRENTASK------------------GEFQSQSSISMSEKQTREISEQTMTPSVQALAR 108
            +R   AS+                        + + +S ++   +S    T +VQALA 
Sbjct: 62  PERSKEASRTGRGTSMGGAASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALAD 121

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           LIQS NPL K+G++WTPHR          I   +M+T + PSGDQP AI  L++G+ +++
Sbjct: 122 LIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-RMETSFEPSGDQPTAIRDLVEGLENQD 180

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q+LLGVTGSGKTFTMA+VIE  QRPA+++APNK LAAQLY EFK+FFP+NAVEYFVSY
Sbjct: 181 RTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY 240

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 241 YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE 300

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI  +RG+FRV GD+IEIFP+HLED AW
Sbjct: 301 TYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAW 360

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+S+FG++IE I+EF PLTGQK  +++++KIYANSHYVTPRPTLN A+K IKEELK RL 
Sbjct: 361 RISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLD 420

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           EL + GRLLEAQRL+QR T+DLEMLE TGSC  IENYSRYLTGR PGEPPPTLFEYIP++
Sbjct: 421 ELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN 480

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +L+F+DESHVT+PQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI V
Sbjct: 481 ALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAV 540

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR A+TQV+DV  EI   A++G R L+T
Sbjct: 541 SATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIRPAKTQVDDVLGEIRDTAKKGYRTLVT 600

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDI
Sbjct: 601 VLTKRMAEDLTEYLHEQGMRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDI 660

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q AIDET RRR
Sbjct: 661 PECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR 720

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
           EKQ  +N+ H I P SVK+ I +++D +   D    +IS  A++ ++      +H++ L 
Sbjct: 721 EKQQAYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLE 780

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 781 KQMRDAAADLDFEKAARLRDEIKRLRETEL 810


>gi|254704764|ref|ZP_05166592.1| excinuclease ABC subunit B [Brucella suis bv. 3 str. 686]
 gi|261755462|ref|ZP_05999171.1| excinuclease ABC subunit B [Brucella suis bv. 3 str. 686]
 gi|261745215|gb|EEY33141.1| excinuclease ABC subunit B [Brucella suis bv. 3 str. 686]
          Length = 940

 Score =  983 bits (2540), Expect = 0.0,   Method: Composition-based stats.
 Identities = 504/810 (62%), Positives = 620/810 (76%), Gaps = 26/810 (3%)

Query: 11  KDSRIQSISTRVD---DLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHR-KNAAKRMLI 66
           KD  I+    + D   +     F    L      +AD  + I  EA K R KN  +   I
Sbjct: 5   KDKHIRDSRNKADGFGEAPQAGFSGAPLSG---TIADWAKEIGDEAAKPRAKNPKQPKKI 61

Query: 67  HQRENTASK------------------GEFQSQSSISMSEKQTREISEQTMTPSVQALAR 108
            +R   AS+                        + + +S ++   +S    T +VQALA 
Sbjct: 62  PERSKEASRTGRGTSMGGAASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALAN 121

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           LIQS NPL K+G++WTPHR          I   +M+T + PSGDQP AI  L++G+ +++
Sbjct: 122 LIQSGNPLFKHGELWTPHRPVRPEKSEGGIPI-RMETSFEPSGDQPTAIRDLVEGLENQD 180

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q+LLGVTGSGKTF MA+VIE  QRPA+++APNK LAAQLY EFK+FFP+NAVEYFVSY
Sbjct: 181 RTQVLLGVTGSGKTFAMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY 240

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 241 YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE 300

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI  +RG+FRV GD+IEIFP+HLED AW
Sbjct: 301 TYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAW 360

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+S+FG++IE I+EF PLTGQK  +++++KIYANSHYVTPRPTLN A+K IKEELK RL 
Sbjct: 361 RISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLD 420

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           EL + GRLLEAQRL+QR T+DLEMLE TGSC  IENYSRYLTGR PGEPPPTLFEYIP++
Sbjct: 421 ELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN 480

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +L+F+DESHVT+PQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI V
Sbjct: 481 ALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAV 540

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR A+TQV+DV  EI   A++G R L+T
Sbjct: 541 SATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIRPAKTQVDDVLGEIRDTAKKGYRTLVT 600

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDI
Sbjct: 601 VLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDI 660

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q AIDET RRR
Sbjct: 661 PECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR 720

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
           EKQ  +N+ H I P SVK+ I +++D +   D    +IS  A++ ++      +H++ L 
Sbjct: 721 EKQQAYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLE 780

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 781 KQMRDAAADLDFEKAARLRDEIKRLRETEL 810


>gi|116252704|ref|YP_768542.1| excinuclease ABC subunit B [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257352|emb|CAK08447.1| putative UVRABC system protein B (UvrB protein) (excinuclease ABC
           subunit B) [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1009

 Score =  983 bits (2540), Expect = 0.0,   Method: Composition-based stats.
 Identities = 507/799 (63%), Positives = 623/799 (77%), Gaps = 29/799 (3%)

Query: 33  KQLEVD-KTMVADAMRRIRSEAGKHRKNAA--------------------KRMLIHQREN 71
           KQLE D +T   +  R+I S+AGKHRK                         M       
Sbjct: 36  KQLEADAETSGVETQRQIASKAGKHRKKVEIAARTKTSDGGVSASKSARGTSMGGSTDPK 95

Query: 72  TASKGEFQSQSSISMSEKQTREI-SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWS 130
           T +       S +  + ++   + +   +T +V+AL+ LI+S NPL KNGKIWTPHR   
Sbjct: 96  TRAAAGLNPVSGMDTTLEEASSLQAGTAVTATVEALSALIESGNPLHKNGKIWTPHRPAR 155

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
            +     I   +MQ+DY P+GDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMAKVIE
Sbjct: 156 PDKSEGGIAI-RMQSDYEPAGDQPTAIRDLVEGLENGDRSQVLLGVTGSGKTFTMAKVIE 214

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
           A QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESS
Sbjct: 215 ATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESS 274

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++LL+
Sbjct: 275 INEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQLLA 334

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV QQYKR+D+   RG+FRV GD+IE+FP+HLED AWR+SMFG++I+ I+EF PLTGQK
Sbjct: 335 DLVAQQYKRRDMDFTRGSFRVRGDTIELFPAHLEDAAWRISMFGDEIDAITEFDPLTGQK 394

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           + +++++KIYANSHYVTPRPTLN A+K IKEEL++RL ELEK GRLLEAQRLEQR  YD+
Sbjct: 395 VGDLKSVKIYANSHYVTPRPTLNGAIKSIKEELRLRLAELEKAGRLLEAQRLEQRTRYDI 454

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EMLE TGSCQ IENYSRYLTGR+PG+PPPTLFEYIP+++L+F+DESHVT+PQI GMYRGD
Sbjct: 455 EMLEATGSCQGIENYSRYLTGRDPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGD 514

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
           F RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ  G+  EQ+IR
Sbjct: 515 FRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGGWEMEQSGGVFAEQVIR 574

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DPPVE+RSAR+QV+DV  EI   A +G R L TVLTKRMAEDLTEYL+E+ +RVR
Sbjct: 575 PTGLIDPPVEVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVR 634

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           YMHS++ TLERIEI+RDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TS
Sbjct: 635 YMHSDIDTLERIEILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETS 694

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ KVILYAD +T S++ A++ET RRREKQ+ +N++H I P+SVK +I 
Sbjct: 695 LIQTIGRAARNVDGKVILYADQVTGSMKRAMEETGRRREKQMVYNQEHGITPESVKARIS 754

Query: 731 EVIDPILLEDAATTNISID-----AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           +++D +   D    +IS       A   +L     + HL +L K M  AA +L+FE+AAR
Sbjct: 755 DILDSVYERDHVRADISGASGKGFADGGNLVGNNLQTHLNALEKSMRDAAADLDFEKAAR 814

Query: 786 IRDEIKRLKSSPYFQGLDD 804
           +RDEIKRLK++     +DD
Sbjct: 815 LRDEIKRLKAAE-LAVMDD 832


>gi|161619459|ref|YP_001593346.1| excinuclease ABC subunit B [Brucella canis ATCC 23365]
 gi|260565991|ref|ZP_05836461.1| excinuclease ABC subunit B [Brucella suis bv. 4 str. 40]
 gi|161336270|gb|ABX62575.1| excinuclease ABC, B subunit [Brucella canis ATCC 23365]
 gi|260155509|gb|EEW90589.1| excinuclease ABC subunit B [Brucella suis bv. 4 str. 40]
          Length = 940

 Score =  982 bits (2538), Expect = 0.0,   Method: Composition-based stats.
 Identities = 504/810 (62%), Positives = 620/810 (76%), Gaps = 26/810 (3%)

Query: 11  KDSRIQSISTRVD---DLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHR-KNAAKRMLI 66
           KD  I+    + D   +     F    L      +AD  + I  EA K R KN  +   I
Sbjct: 5   KDKHIRDSRNKADGFGEAPQAGFSGAPLSG---TIADWAKEIGDEAAKPRAKNPKQPKKI 61

Query: 67  HQRENTASK------------------GEFQSQSSISMSEKQTREISEQTMTPSVQALAR 108
            +R   AS+                        + + +S ++   +S    T +VQALA 
Sbjct: 62  PERSKEASRTGRGTSMGGAASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALAN 121

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           LIQS NPL K+G++WTPHR          I   +M+T + PSGDQP AI  L++G+ +++
Sbjct: 122 LIQSGNPLFKHGELWTPHRPVRPEKSEGGIPI-RMETSFEPSGDQPTAIRDLVEGLENQD 180

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q+LLGVTGSGKTF MA+VIE  QRPA+++APNK LAAQLY EFK+FFP+NAVEYFVSY
Sbjct: 181 RTQVLLGVTGSGKTFAMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY 240

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 241 YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE 300

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI  +RG+FRV GD+IEIFP+HLED AW
Sbjct: 301 TYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAW 360

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+S+FG++IE I+EF PLTGQK  +++++KIYANSHYVTPRPTLN A+K IKEELK RL 
Sbjct: 361 RISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLD 420

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           EL + GRLLEAQRL+QR T+DLEMLE TGSC  IENYSRYLTGR PGEPPPTLFEYIP++
Sbjct: 421 ELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN 480

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +L+F+DESHVT+PQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI V
Sbjct: 481 ALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAV 540

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR A+TQV+DV  EI   A++G R L+T
Sbjct: 541 SATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIRPAKTQVDDVLGEIRDTAKKGYRTLVT 600

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDI
Sbjct: 601 VLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDI 660

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q AIDET RRR
Sbjct: 661 PECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR 720

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
           EKQ  +N+ H I P SVK+ I +++D +   D    +IS  A++ ++      +H++ L 
Sbjct: 721 EKQQAYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLE 780

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 781 KQMRDAAADLDFEKAARLRDEIKRLRETEL 810


>gi|153008983|ref|YP_001370198.1| excinuclease ABC subunit B [Ochrobactrum anthropi ATCC 49188]
 gi|151560871|gb|ABS14369.1| excinuclease ABC, B subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 941

 Score =  982 bits (2538), Expect = 0.0,   Method: Composition-based stats.
 Identities = 497/776 (64%), Positives = 612/776 (78%), Gaps = 20/776 (2%)

Query: 42  VADAMRRIRSEAGKHR-KNAAKRMLIHQRENTASKGE------------------FQSQS 82
           +AD  + I  EA K R KN  +   I +R   AS+                        +
Sbjct: 40  IADWAKEIGDEAAKPRAKNPKQPKKIPERSKEASRSGRGTSMGGAASAKERAAAGLNPVA 99

Query: 83  SISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
            + +S +    ++    T +VQAL+ LI S NPL KNG++WTPHR    +     I   +
Sbjct: 100 GLDISLEDAAGLNPSGATATVQALSDLIASGNPLFKNGELWTPHRPARPDKSEGGIAI-E 158

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M+T + PSGDQP AI  LL+G+ + ++ Q+LLGVTGSGKTFTMA+VI+  QRPA+++APN
Sbjct: 159 METSFEPSGDQPTAIRDLLEGLDNDDRTQVLLGVTGSGKTFTMAQVIQRTQRPALILAPN 218

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSA
Sbjct: 219 KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSA 278

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI
Sbjct: 279 TRALLERDDVIIVASVSCIYGIGSVETYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDI 338

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IE+FP+HLED AWR+S+FG++IE I+EF PLTGQK  +++++KIYAN
Sbjct: 339 NFVRGSFRVRGDTIELFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTGDLKSVKIYAN 398

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL+EL   GRLLEAQRL+QR T+DLEMLE TGSC  I
Sbjct: 399 SHYVTPRPTLNQAIKSIKEELKHRLVELNNAGRLLEAQRLDQRTTFDLEMLEATGSCAGI 458

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGRNPGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 459 ENYSRYLTGRNPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 518

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG WE+E+  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 519 RLPSCMDNRPLRFEEWDAMRPQTIAVSATPGGWEMEEAGGVFAEQVIRPTGLIDPPVEIR 578

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A++QV+DV  EI   AQ+G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 579 PAKSQVDDVLGEIRETAQKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 638

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSL+QTIGRAARNV
Sbjct: 639 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLVQTIGRAARNV 698

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD IT S+Q A+DET+RRREKQ+ +N++H I P SVK+ I +++  +   D  
Sbjct: 699 DGKVILYADNITGSMQRAMDETSRRREKQVAYNEEHGITPASVKKNISDILGSVYERDHV 758

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
             +IS  A++ ++      AHL+ L KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 759 RADISGFAEEGAMMGNNLAAHLEHLEKQMRDAAADLDFEKAARLRDEIKRLRETEL 814


>gi|254714731|ref|ZP_05176542.1| excinuclease ABC subunit B [Brucella ceti M644/93/1]
 gi|254717791|ref|ZP_05179602.1| excinuclease ABC subunit B [Brucella ceti M13/05/1]
 gi|261219641|ref|ZP_05933922.1| excinuclease ABC subunit B [Brucella ceti M13/05/1]
 gi|261322529|ref|ZP_05961726.1| excinuclease ABC subunit B [Brucella ceti M644/93/1]
 gi|260924730|gb|EEX91298.1| excinuclease ABC subunit B [Brucella ceti M13/05/1]
 gi|261295219|gb|EEX98715.1| excinuclease ABC subunit B [Brucella ceti M644/93/1]
          Length = 940

 Score =  982 bits (2538), Expect = 0.0,   Method: Composition-based stats.
 Identities = 504/810 (62%), Positives = 620/810 (76%), Gaps = 26/810 (3%)

Query: 11  KDSRIQSISTRVD---DLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHR-KNAAKRMLI 66
           KD  I+    + D   +     F    L      +AD  + I  EA K R KN  +   I
Sbjct: 5   KDKHIRDSRNKADGFGEAPQAGFSGAPLSG---TIADWAKEIGDEAAKPRAKNPKQPKKI 61

Query: 67  HQRENTASK------------------GEFQSQSSISMSEKQTREISEQTMTPSVQALAR 108
            +R   AS+                        + + +S ++   +S    T +VQALA 
Sbjct: 62  PERSKEASRTGRGTSMGGAASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALAD 121

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           LIQS NPL K+G++WTPHR          I   +M+T + PSGDQP AI  L++G+ +++
Sbjct: 122 LIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-RMETSFEPSGDQPTAIRDLVEGLENQD 180

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q+LLGVTGSGKTFTMA+VIE  QRPA+++APNK LAAQLY EFK+FFP+NAVEYFVSY
Sbjct: 181 RTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY 240

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 241 YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE 300

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI  +RG+FRV GD+IEIFP+HLED AW
Sbjct: 301 TYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAW 360

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+S+FG++IE I+EF PLTGQK  +++++KIYANSHYVTPRPTLN A+K IKEELK RL 
Sbjct: 361 RISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLD 420

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           EL + GRLLEAQRL+QR T+DLEMLE TGSC  IENYSRYLTGR PGEPPPTLFEYIP++
Sbjct: 421 ELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN 480

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +L+F+DESHVT+PQI GMY GDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI V
Sbjct: 481 ALVFIDESHVTVPQIGGMYHGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAV 540

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR A+TQV+DV  EI   A++G R L+T
Sbjct: 541 SATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIRPAKTQVDDVLGEIRDTAKKGYRTLVT 600

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDI
Sbjct: 601 VLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDI 660

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q AIDET RRR
Sbjct: 661 PECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR 720

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
           EKQ  +N+ H I P SVK+ I +++D +   D    +IS  A++ ++      +H++ L 
Sbjct: 721 EKQQTYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLE 780

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 781 KQMRDAAADLDFEKAARLRDEIKRLRETEL 810


>gi|148560683|ref|YP_001259390.1| excinuclease ABC subunit B [Brucella ovis ATCC 25840]
 gi|148371940|gb|ABQ61919.1| excinuclease ABC subunit B [Brucella ovis ATCC 25840]
          Length = 940

 Score =  980 bits (2533), Expect = 0.0,   Method: Composition-based stats.
 Identities = 504/810 (62%), Positives = 620/810 (76%), Gaps = 26/810 (3%)

Query: 11  KDSRIQSISTRVD---DLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHR-KNAAKRMLI 66
           KD  I+    + D   +     F    L      +AD  + I  EA K R KN  +   I
Sbjct: 5   KDKHIRDSRNKADGFGEAPQAGFSGAPLSG---TIADWAKEIGDEAAKPRAKNPKQPKKI 61

Query: 67  HQRENTASK------------------GEFQSQSSISMSEKQTREISEQTMTPSVQALAR 108
            +R   AS+                        + + +S ++   +S    T +VQALA 
Sbjct: 62  PERSKEASRTGRGTSMGGAASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALAD 121

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           LIQS NPL K+G++WTPHR          I   +M+T + PSGDQP AI  L++G+ +++
Sbjct: 122 LIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-RMETSFEPSGDQPTAIRDLMEGLENQD 180

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q+LLGVTGSGKTFTMA+VIE  QRPA+++APNK LAAQLY EFK+FFP+NAVEYFVSY
Sbjct: 181 RTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY 240

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 241 YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE 300

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI  +RG+FRV GD+IEIFP+HLED AW
Sbjct: 301 TYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAW 360

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+S+FG++IE I+EF PLTGQK  +++++KIYANSHYVTPRPTLN A+K IKEELK RL 
Sbjct: 361 RISLFGDEIETITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLD 420

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           EL + GRLLEAQRL+QR T+DLEMLE TGSC  IENYSRYLTGR PGEPPPTLFEYIP++
Sbjct: 421 ELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYIPDN 480

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +L+F+DESHVT+PQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI V
Sbjct: 481 ALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAV 540

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG+WE+E+  G+  EQ+IRPTGL+DPPVEIR A+TQV+DV  EI   A++G R L+T
Sbjct: 541 SATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEIRPAKTQVDDVLGEIRDTAKKGYRTLVT 600

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDI
Sbjct: 601 VLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDI 660

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECG VAILDADKE FLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q AIDET RRR
Sbjct: 661 PECGFVAILDADKEDFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMQRAIDETNRRR 720

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
           EKQ  +N+ H I P SVK+ I +++D +   D    +IS  A++ ++      +H++ L 
Sbjct: 721 EKQQAYNEAHGITPASVKKNISDILDSVYERDHVRADISGFAEEGAMMGNNLASHVEYLE 780

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 781 KQMRDAAADLDFEKAARLRDEIKRLRETEL 810


>gi|222148547|ref|YP_002549504.1| excinuclease ABC subunit B [Agrobacterium vitis S4]
 gi|221735533|gb|ACM36496.1| excinuclease ABC B subunit [Agrobacterium vitis S4]
          Length = 1001

 Score =  979 bits (2532), Expect = 0.0,   Method: Composition-based stats.
 Identities = 502/827 (60%), Positives = 613/827 (74%), Gaps = 55/827 (6%)

Query: 33  KQLEVDKTMVA-DAMRRIRSEAGKHRKNAAKRMLIHQR---------------------- 69
           KQLE +      ++ R + S+AGKHRK        H                        
Sbjct: 51  KQLEAEAEAGGIESQRELASKAGKHRKKIEIEARRHAEKIALEKSTGRKTEAADPVKAGR 110

Query: 70  --------------------------ENTASKGEFQSQSSISMSEKQTREISEQTMTPSV 103
                                       T +       S +  S ++ + ++   +T +V
Sbjct: 111 TAKAKSEDGGSAMRTSRGVSIGASSDPATRAAAGLNPVSGMDTSLEEAQSLAPGAVTATV 170

Query: 104 QALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKG 163
           +AL+ LI+S NPL K GKIW PHR          I   +M +DY P+GDQP AI  L++G
Sbjct: 171 EALSALIESGNPLFKGGKIWAPHRPARPEKSEGGIPI-RMVSDYEPAGDQPTAIKDLVEG 229

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           I++ E+ Q+LLGVTGSGKTFTMAKVIEA QRPA+++APNK LAAQLYSEFK+FFP NAVE
Sbjct: 230 INAGERSQVLLGVTGSGKTFTMAKVIEATQRPAVILAPNKTLAAQLYSEFKHFFPDNAVE 289

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
           YFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRH+ATR++LER+DCI+V+SVSCIYG
Sbjct: 290 YFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHAATRAILERDDCIIVASVSCIYG 349

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           IGSVE+Y+ M  Q+ +GD ++Q++LL+ LV QQYKRQDI  +RG+FRV GD+IEIFP+HL
Sbjct: 350 IGSVETYTAMTFQMSVGDRIDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHL 409

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           ED AWR+SMFG++I+ I+EF PLTG K  +++++KIYANSHYVTPRPTLN A+K IKEEL
Sbjct: 410 EDAAWRISMFGDEIDAITEFDPLTGHKTGDMKSVKIYANSHYVTPRPTLNGAIKAIKEEL 469

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           K RL ELEK GRLLEAQRLEQR  YD+EM+E TG+C  IENYSRYLTGR PGEPPPTLFE
Sbjct: 470 KQRLAELEKGGRLLEAQRLEQRTRYDIEMMEATGACAGIENYSRYLTGRAPGEPPPTLFE 529

Query: 464 YIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP 523
           YIP+++LLF+DESHV++ QI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP
Sbjct: 530 YIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRP 589

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T+ VSATPGSWELEQ  G+  EQ+IRPTGL+DPPVE+RSA+TQV+DV  EI   + +G 
Sbjct: 590 PTVAVSATPGSWELEQSGGVFAEQVIRPTGLIDPPVEVRSAKTQVDDVLGEIKETSLKGY 649

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEI+RDLRLG FDVLVGINLLR
Sbjct: 650 RTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEILRDLRLGAFDVLVGINLLR 709

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
           EGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD IT S++ A+DE
Sbjct: 710 EGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQITGSMRRAMDE 769

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ-----LSLSKK 758
           T+RRREKQ+ +N +H I P+SVK KI +++D +   D    +IS  + +       L   
Sbjct: 770 TSRRREKQVAYNLEHGITPESVKSKISDILDSVYERDHVRADISGASGKGFAAGGHLVGN 829

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             +AHL +L KQM  AA +L+FE AAR+RDEIKRLK        D  
Sbjct: 830 NLQAHLSALEKQMRDAAADLDFETAARLRDEIKRLKEVELASMGDPG 876


>gi|90418260|ref|ZP_01226172.1| excinuclease ABC, B subunit (helicase subunit of the DNA excision
           repair complex) [Aurantimonas manganoxydans SI85-9A1]
 gi|90337932|gb|EAS51583.1| excinuclease ABC, B subunit (helicase subunit of the DNA excision
           repair complex) [Aurantimonas manganoxydans SI85-9A1]
          Length = 1102

 Score =  964 bits (2492), Expect = 0.0,   Method: Composition-based stats.
 Identities = 473/738 (64%), Positives = 583/738 (78%), Gaps = 1/738 (0%)

Query: 61  AKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG 120
              M         +       + + +S +  + + E  +T +V AL +LI   +PLLKNG
Sbjct: 113 GTSMGGTSDPKQRAAAGLNPVAGMDLSLEDAKGLPEGGVTATVDALTKLISEGDPLLKNG 172

Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180
           +IW PHR    +     +  F++ +DY P GDQP AIA L+ GI   ++ Q+LLGVTGSG
Sbjct: 173 EIWVPHRPARPDKSEGGV-PFRIASDYTPQGDQPTAIADLVSGITDHDQTQVLLGVTGSG 231

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           KTF++A VIE  QRPA+++APNK LAAQLY EFKNFFP NAVEYFVSYYDYYQPEAYVPR
Sbjct: 232 KTFSVANVIERTQRPALILAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPR 291

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           +DT+IEKESSINEQIDRMRH+ATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M  Q+ IG
Sbjct: 292 SDTFIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYTAMTFQMSIG 351

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           D ++Q++LL+ LV QQYKR+D+   RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I
Sbjct: 352 DRLDQRQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIESI 411

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
            EF PLTGQK  +++++KIYANSHYVTPRPTLN A++ IKEEL+ RL+ELEK GRLLEAQ
Sbjct: 412 QEFDPLTGQKTDSLKSVKIYANSHYVTPRPTLNQAVRLIKEELRHRLVELEKAGRLLEAQ 471

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
           RLEQR  +D+EM+E TGSC  IENYSRYLTGR PG PPPTLFEY+P+++L+F+DESHVT+
Sbjct: 472 RLEQRTRFDIEMIEATGSCPGIENYSRYLTGRQPGHPPPTLFEYLPDNALVFIDESHVTV 531

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           PQI  MYRGDF RKATLAEYGFRLPSCMDNRPLRFEEWN +RP T+ VSATPGSWE+E+ 
Sbjct: 532 PQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWNAMRPQTVAVSATPGSWEMEEA 591

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
            G+  EQ+IRPTGL+DPPVEIR AR+QV+D+  EI     +G R+L TVLTKRMAEDLTE
Sbjct: 592 GGVFAEQVIRPTGLIDPPVEIRPARSQVDDLVGEIRDTVDKGYRVLATVLTKRMAEDLTE 651

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           YL+E+ IRVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECGLVAILDAD
Sbjct: 652 YLHEQGIRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGLVAILDAD 711

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
           KEGFLRS+TSLIQTIGRAARN++ KVILYAD  T S++ AI ET RRREKQ  +N +H I
Sbjct: 712 KEGFLRSETSLIQTIGRAARNIDGKVILYADRTTGSMERAIAETNRRREKQEAYNAEHGI 771

Query: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
            P SVK +I +++D    +D    ++   A++ ++     K+HL+ L KQM  AA +L+F
Sbjct: 772 TPASVKAQIADILDSYYEKDHVRVDVGPGAKEGAMVGNNLKSHLEHLEKQMRDAAADLDF 831

Query: 781 EEAARIRDEIKRLKSSPY 798
           E AAR+RDEIKRL++   
Sbjct: 832 ETAARLRDEIKRLQAKEL 849


>gi|114706909|ref|ZP_01439809.1| excinuclease ABC subunit B [Fulvimarina pelagi HTCC2506]
 gi|114537857|gb|EAU40981.1| excinuclease ABC subunit B [Fulvimarina pelagi HTCC2506]
          Length = 1094

 Score =  961 bits (2484), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/796 (61%), Positives = 599/796 (75%), Gaps = 3/796 (0%)

Query: 12  DSRIQSISTRVDDLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNA-AKRMLIHQRE 70
           ++R +  +    D      + K    D    A A      +A K  K+A    M   +  
Sbjct: 54  ETRAERTADGDGDPASADAKPKTSARDTKPKAKARTAASDKAQKPMKSARGTSMGGTRDP 113

Query: 71  NTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWS 130
              +       + + +S +  + + E  +T +VQAL+ LI S NPL KNG+IW PHR   
Sbjct: 114 KERAAAGLNPVAGMDVSLEDAKSLPEGGVTATVQALSDLISSGNPLHKNGEIWLPHRPAR 173

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
                  +  F++ +DY P GDQP AIA L+ G+  ++K Q+LLGVTGSGKTFT+A VIE
Sbjct: 174 PEKSEGGVK-FRIASDYTPMGDQPTAIADLVSGVSDQDKTQVLLGVTGSGKTFTVANVIE 232

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
             QRPA+V+APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESS
Sbjct: 233 RTQRPALVLAPNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESS 292

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INEQIDRMRH+ATR+LLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++LL+
Sbjct: 293 INEQIDRMRHAATRALLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQLLA 352

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV QQYKR+D+   RG+FRV GD+IEIFP+HLED AWR+SMFG++IE I EF PLTG+K
Sbjct: 353 DLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIEAIHEFDPLTGRK 412

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
             +++++KIYANSHYVTPRPTLN A+K IKEELK RL ELEK GRLLEAQRLEQR  +D+
Sbjct: 413 TDDLKSVKIYANSHYVTPRPTLNQAIKSIKEELKHRLAELEKAGRLLEAQRLEQRTRFDI 472

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+E TGSC  IENYSRYLTGR PG PPPTLFEY+P+++L+F+DESHVT+PQI  MYRGD
Sbjct: 473 EMIEATGSCPGIENYSRYLTGRQPGHPPPTLFEYLPDNALVFIDESHVTVPQIGAMYRGD 532

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
           F RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP T+ VSATP +WELEQ  G+  EQ+IR
Sbjct: 533 FRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTVAVSATPSTWELEQSGGVFAEQVIR 592

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL DPPVEIR ARTQV+D+  EI     +G R+L TVLTKRMAEDLTEYL+E+ IRVR
Sbjct: 593 PTGLTDPPVEIRPARTQVDDLLGEIRETVDRGYRVLCTVLTKRMAEDLTEYLHEQGIRVR 652

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           YMHS++ TLERIEIIRDLRLG FD LVGINLLREGLDIPECGLVAILDADKEGFLRS+TS
Sbjct: 653 YMHSDIDTLERIEIIRDLRLGAFDCLVGINLLREGLDIPECGLVAILDADKEGFLRSETS 712

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ KVILYAD  T S++ AI ET RRREKQL +N +H I P SVK KI 
Sbjct: 713 LIQTIGRAARNVDGKVILYADNETGSMKRAIAETDRRREKQLAYNAEHGITPASVKAKIA 772

Query: 731 EVIDPILLEDAATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           +++D    +D    ++   A+   +      +AH++ L K M  AA +L+FE+AA++RDE
Sbjct: 773 DILDSYYEKDHVRIDVGGMAEDEGAFVGNNLRAHIEHLEKSMREAAADLDFEKAAKLRDE 832

Query: 790 IKRLKSSPYFQGLDDS 805
           IK+L++     G D  
Sbjct: 833 IKKLQAKELEFGPDAG 848


>gi|328542853|ref|YP_004302962.1| Helicase subunit of the DNA excision repair complex [polymorphum
           gilvum SL003B-26A1]
 gi|326412599|gb|ADZ69662.1| Helicase subunit of the DNA excision repair complex [Polymorphum
           gilvum SL003B-26A1]
          Length = 1059

 Score =  955 bits (2469), Expect = 0.0,   Method: Composition-based stats.
 Identities = 473/772 (61%), Positives = 583/772 (75%), Gaps = 27/772 (3%)

Query: 52  EAGKHRKNA-AKRMLIHQRENTASKGEFQSQSSISMSEKQTREI---------------- 94
           +  K  K+A    M         + G     + + +S ++  ++                
Sbjct: 115 KKEKPTKSARGTSMGKADTARERAAGGLNPVAGLDISLEEAEQLEQRLKQHQKDTRKKRK 174

Query: 95  --------SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTD 146
                     Q  T +V AL+ LI+S NPL KNG IW PHR          +   ++ ++
Sbjct: 175 DSKFGELGGNQGATATVAALSALIESGNPLHKNGDIWVPHRPERPAKSEGGVPI-KLVSE 233

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206
           Y P+GDQP AIA+L+ G+ S E+ Q+LLGVTGSGKT+TMA+VI   QRPA+++APNK LA
Sbjct: 234 YEPAGDQPTAIAELVGGVESGEQTQVLLGVTGSGKTYTMAQVIARTQRPALILAPNKTLA 293

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266
           AQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPRTDTYIEKESS+NEQIDRMRH+ATR+L
Sbjct: 294 AQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSVNEQIDRMRHAATRAL 353

Query: 267 LERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
           LER+D I+V+SVSCIYGIGSVE+Y+ M   L++G+ ++Q++LL+ LV  QYKR D    R
Sbjct: 354 LERDDVIIVASVSCIYGIGSVETYTAMTFALEVGERIDQRQLLADLVALQYKRNDAAFQR 413

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           G+FRV GD++E+FP+H ED AWR+S+FG+++E I+EF PLTG+K   ++++KIYANSHYV
Sbjct: 414 GSFRVRGDTVELFPAHYEDRAWRISLFGDEVEAITEFDPLTGKKSGEMKSVKIYANSHYV 473

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
           TP+PTL  A+K IK ELK RL EL   GRLLEAQRLEQR  +DLEMLE TGSC  IENYS
Sbjct: 474 TPKPTLAQAIKSIKAELKTRLDELNAHGRLLEAQRLEQRTIFDLEMLEATGSCAGIENYS 533

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS 506
           RYLTGR PGEPPPTLFEY+P+D+L+F+DESHVT+PQI GMYRGDF RKATLAEYGFRLPS
Sbjct: 534 RYLTGRAPGEPPPTLFEYLPDDALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPS 593

Query: 507 CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
           CMDNRPLRFEEWN +RP T+ VSATPGSWE+EQ  G+  EQ+IRPTGLVDPPV+IR A +
Sbjct: 594 CMDNRPLRFEEWNAMRPQTVCVSATPGSWEMEQSGGVFAEQVIRPTGLVDPPVDIRPASS 653

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           QV+D+  E+   A +G R L+T LTKRMAEDLTEYL+E  +RVRYMHS++ TLERIEIIR
Sbjct: 654 QVDDLLGEVRAVAAKGYRTLVTTLTKRMAEDLTEYLHENGVRVRYMHSDIDTLERIEIIR 713

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           DLRLG FDVLVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KV
Sbjct: 714 DLRLGAFDVLVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKV 773

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
           ILYADT+T S++ AI ET RRR+KQL +N +H I P+SVK  I +++D +  +D  T + 
Sbjct: 774 ILYADTMTGSMERAIAETNRRRDKQLAYNAEHGITPESVKRSIADILDSVYEQDHVTVDA 833

Query: 747 SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
              A+  SL     KAH++SL K+M  AA +L FE AAR+RDEIKRL+ +  
Sbjct: 834 GF-AEAGSLVGHNLKAHIESLEKRMREAAADLEFETAARLRDEIKRLQETEL 884


>gi|163760755|ref|ZP_02167835.1| excinuclease ABC subunit B [Hoeflea phototrophica DFL-43]
 gi|162282077|gb|EDQ32368.1| excinuclease ABC subunit B [Hoeflea phototrophica DFL-43]
          Length = 982

 Score =  954 bits (2467), Expect = 0.0,   Method: Composition-based stats.
 Identities = 495/822 (60%), Positives = 610/822 (74%), Gaps = 37/822 (4%)

Query: 9   PKKDSRIQSISTRVDDLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNAAK------ 62
           P   +++ S  +  D     + +E +L+  K       R +RS+AGKHR  A K      
Sbjct: 26  PLSGAQVSSSGSIADWAADLA-KEAELDAVKARRKAENRELRSQAGKHRLKAGKTKDEVP 84

Query: 63  ----------------------RMLIHQRENTASKGEFQSQSSISMSEKQTR-EISEQTM 99
                                  +         +     + + + +S ++     +    
Sbjct: 85  AKSPAKGKAATAEKSKKTARGTSIGSTNDPRARAAAGLNAVAGLDISVEEAEASGATSAN 144

Query: 100 TPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQ 159
           T +VQAL+ LI+S NPL KNGK W PHR          +   +M T+Y P+GDQP AIA 
Sbjct: 145 TATVQALSDLIESGNPLFKNGKTWVPHRPARPEKSEGGVPI-RMATEYKPAGDQPTAIAD 203

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           L+ G +  E+ Q+LLGVTGSGKTFTMAKVIE  QRPA+++APNK LAAQLYSEFKNFFP 
Sbjct: 204 LVAGANENERNQVLLGVTGSGKTFTMAKVIEETQRPAVILAPNKTLAAQLYSEFKNFFPD 263

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           NAVEYFVSYYDYYQPEAYVPRTDT+IEKES++NEQIDRMRHSATR+L+ER+D I+V+SVS
Sbjct: 264 NAVEYFVSYYDYYQPEAYVPRTDTFIEKESTVNEQIDRMRHSATRALMERDDVIIVASVS 323

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
           CIYGIGSVE+Y+ M  Q+ +GD ++Q++LL+ LV QQYKR+D+   RG+FRV GD+IE+F
Sbjct: 324 CIYGIGSVETYTAMTFQMSVGDRIDQRQLLADLVAQQYKRRDMDFQRGSFRVRGDTIELF 383

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P+HLED AWR+S+FG++IE I EF PLTG+K  +++++KIYANSHYVTPRPTLN A K+I
Sbjct: 384 PAHLEDAAWRISLFGDEIETIVEFDPLTGKKTGDLKSVKIYANSHYVTPRPTLNQATKHI 443

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
           +EELK RL ELE  GRLLEAQRLEQR  +DLEMLE TG CQ IENYSRYLTGR PGEPPP
Sbjct: 444 REELKHRLAELEASGRLLEAQRLEQRTRFDLEMLEATGVCQGIENYSRYLTGRAPGEPPP 503

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519
           TLFEYIP+++LLF+DESHV+IPQI GMYRGDF RKATLAEYGFRLPSC+DNRPLRFEEW+
Sbjct: 504 TLFEYIPDNALLFIDESHVSIPQIGGMYRGDFRRKATLAEYGFRLPSCLDNRPLRFEEWD 563

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
            +RP T+ VSATPG+WE+EQ  G+  EQ+IRPTGL+DPPVE+R A  QV+DV  EI   A
Sbjct: 564 AMRPCTVAVSATPGNWEMEQAGGVFAEQVIRPTGLIDPPVEVRPAHAQVDDVLGEIRATA 623

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           + G R L TVLTKRMAEDLTEYL+E+ IRVRYMHS++ TLERIEIIRDLRLG FDVLVGI
Sbjct: 624 EAGYRTLCTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGI 683

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           NLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S++ 
Sbjct: 684 NLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADKVTGSMER 743

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI------DAQQL 753
           A++ET+RRR KQ E+N  + I P+SVK  I +++D +   D    +IS          + 
Sbjct: 744 AMEETSRRRAKQEEYNAANGITPESVKAHISDILDSVYERDHVRASISAPTGKGKGQDEG 803

Query: 754 SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +L     KAHL++L KQM  AA +L+FE AAR+RDE+KRLK+
Sbjct: 804 ALVGANLKAHLEALEKQMRDAAADLDFETAARLRDEVKRLKA 845


>gi|118591823|ref|ZP_01549218.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
           motif A (P-loop):UvrB/UvrC protein:Excinuclease ABC, B
           [Stappia aggregata IAM 12614]
 gi|118435466|gb|EAV42112.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
           motif A (P-loop):UvrB/UvrC protein:Excinuclease ABC, B
           [Stappia aggregata IAM 12614]
          Length = 976

 Score =  954 bits (2466), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/797 (59%), Positives = 593/797 (74%), Gaps = 31/797 (3%)

Query: 31  EEKQLEVDKTMVADAMRRIRSEAGKHRKNAAKRMLIHQ-----RENTASKGEFQSQSSIS 85
           E K+   D      + R+  + A   ++   K                + G     + + 
Sbjct: 62  EGKEARADGAPSRRSGRKAGATASAKKEKPTKSSRGTSIGKADSARERAAGGLNPVAGLD 121

Query: 86  MSEKQTREISEQ------------------------TMTPSVQALARLIQSDNPLLKNGK 121
           MS ++   + +Q                          T +V+AL+ LI+S NPL KNG+
Sbjct: 122 MSLEEAESLEKQLKQHQKDNKKKNKESKFGELTGNQGATATVEALSALIESGNPLHKNGE 181

Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181
           +W PHR          +    +++ Y P GDQP AIA L++G+ + E+ Q+LLGVTGSGK
Sbjct: 182 LWVPHRPERPEKSEGGVPI-VLKSAYEPKGDQPTAIADLVEGMENGEQTQVLLGVTGSGK 240

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
           T+TMA+VI   QRPA+++APNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPRT
Sbjct: 241 TYTMAQVISRTQRPALILAPNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRT 300

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           DTYIEKESSINEQIDRMRHSATRSLLER+D I+V+SVSCIYGIGSVE+Y+ M   +++G+
Sbjct: 301 DTYIEKESSINEQIDRMRHSATRSLLERDDVIIVASVSCIYGIGSVETYTAMTFAIEVGE 360

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
            ++Q++L++ LV  QYKR D    RGTFRV GD+IE+FP+H ED AWR+SMFG++IE I+
Sbjct: 361 RMDQRQLIADLVALQYKRNDAAFQRGTFRVRGDTIELFPAHYEDTAWRISMFGDEIESIT 420

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
           EF PLTGQK   ++++KIYANSHYVTP+PTLN A+K IK+ELK RL EL + GRLLEAQR
Sbjct: 421 EFDPLTGQKSGELKSVKIYANSHYVTPKPTLNQAIKSIKDELKHRLEELNQHGRLLEAQR 480

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
           LEQR  +DLEMLE TGSC  IENYSRYLTGR PGEPPPTLFEY+P+++++F DESHVTIP
Sbjct: 481 LEQRTMFDLEMLEATGSCAGIENYSRYLTGRKPGEPPPTLFEYLPDNAIVFADESHVTIP 540

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           QI  MYRGDF RKATLAEYGFRLPSCMDNRPLRFEEWN +RP +I VSATPGSWE+EQ  
Sbjct: 541 QIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWNAMRPQSIAVSATPGSWEMEQAG 600

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G+  EQ+IRPTGL+DPPVEIR A +QV+D+  E+   AQ+G R L+T LTKRMAEDLTEY
Sbjct: 601 GVFAEQVIRPTGLIDPPVEIRPATSQVDDLLGEVREVAQKGYRTLVTTLTKRMAEDLTEY 660

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L+E  +RVRYMHS++ TLERIEI+RDLRLG FDVLVGINLLREGLDIPEC LVAILDADK
Sbjct: 661 LHENGVRVRYMHSDIDTLERIEILRDLRLGAFDVLVGINLLREGLDIPECALVAILDADK 720

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN 721
           EGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S++ AI ET RRREKQL +N++H I 
Sbjct: 721 EGFLRSETSLIQTIGRAARNVDGKVILYADNMTGSMERAIAETNRRREKQLAYNEEHGIT 780

Query: 722 PQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
           P+SV+  I ++++ +  +D  T +    A++ +L     KAH++ L KQM  AA +L+FE
Sbjct: 781 PESVRRSIGDILESVYEQDHVTIDAGF-AEEGNLVGHNLKAHIEDLEKQMRDAAADLDFE 839

Query: 782 EAARIRDEIKRLKSSPY 798
            AAR+RDEIKRL+++  
Sbjct: 840 TAARLRDEIKRLQATEL 856


>gi|110634481|ref|YP_674689.1| excinuclease ABC subunit B [Mesorhizobium sp. BNC1]
 gi|110285465|gb|ABG63524.1| Excinuclease ABC subunit B [Chelativorans sp. BNC1]
          Length = 928

 Score =  942 bits (2435), Expect = 0.0,   Method: Composition-based stats.
 Identities = 487/776 (62%), Positives = 598/776 (77%), Gaps = 20/776 (2%)

Query: 40  TMVADAMRRIRSEA---GKHRKNAAKRMLIHQREN--TASKG----------EFQSQSSI 84
             ++D    I  EA    K RK   +R     R    T+  G               + +
Sbjct: 27  ASISDWAADIAREAEKPAKPRKKIPERSAAPGRTGRGTSMGGAASARDRAAAGLMPIAGL 86

Query: 85  SMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQ 144
            ++ ++   I+   +T +V AL+ LI+  +P LK+   W PHR          I  F+M 
Sbjct: 87  DVTLEEAERIAPGGVTATVAALSNLIEGGDPNLKSA--WVPHRPPRPEKSEGGI-PFRMA 143

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           T++ PSGDQP AI  L++GI + E+ Q+LLGVTGSGKTFTMAKVIE  QRPA+++APNK 
Sbjct: 144 TEFKPSGDQPTAIRDLVEGISTSERTQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKT 203

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
           LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATR
Sbjct: 204 LAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATR 263

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           +LLER+D I+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++LL+ LV+QQYKR+D   
Sbjct: 264 ALLERDDVIIVASVSCIYGIGSVETYTAMTFQMAVGDRLDQRQLLADLVEQQYKRRDADF 323

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTG+K  +++++KIYANSH
Sbjct: 324 TRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIEAITEFDPLTGKKTDDLKSVKIYANSH 383

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
           YVTPRPTLN A++ IKEELK+RL+ELEK GRLLEAQRLEQR  +DLEMLE TGSC  IEN
Sbjct: 384 YVTPRPTLNQAIRQIKEELKLRLVELEKAGRLLEAQRLEQRTRFDLEMLEATGSCAGIEN 443

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
           YSRYLTGRNPGEPPPTLFEY+P+++L+FVDESHVT+PQI  MYRGDF RKATLAEYGFRL
Sbjct: 444 YSRYLTGRNPGEPPPTLFEYVPDNALVFVDESHVTVPQIGAMYRGDFRRKATLAEYGFRL 503

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           PSCMDNRPLRFEEW+ +RP T+ VSATPG+WE+EQ  G+  EQ+IRPTGL+DPPVEIR A
Sbjct: 504 PSCMDNRPLRFEEWDAMRPLTVAVSATPGNWEMEQSGGVFAEQVIRPTGLIDPPVEIRPA 563

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           ++QV+DV  EI    + G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ TLERIEI
Sbjct: 564 KSQVDDVLGEIRETTKAGYRTLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTLERIEI 623

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           IRDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAARNV+ 
Sbjct: 624 IRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAARNVDG 683

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
           +VILYAD IT S++ AI ET RRREKQLE+N  + I P+S+K+ I +++  +   D    
Sbjct: 684 RVILYADHITGSMERAIAETNRRREKQLEYNAGNGITPESIKKNIGDILGSVYERDHVRA 743

Query: 745 NI--SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
            I  +      +L     +AHL+ L K M  AA +L+FEEAAR+RDEIKRL+ +  
Sbjct: 744 EIGGAKGDDLNNLVGNNLQAHLEYLEKAMRDAAADLDFEEAARLRDEIKRLRETEL 799


>gi|254504061|ref|ZP_05116212.1| excinuclease ABC, B subunit, putative [Labrenzia alexandrii DFL-11]
 gi|222440132|gb|EEE46811.1| excinuclease ABC, B subunit, putative [Labrenzia alexandrii DFL-11]
          Length = 1049

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/770 (61%), Positives = 581/770 (75%), Gaps = 28/770 (3%)

Query: 55  KHRKNA-AKRMLIHQRENTASKGEFQSQSSISMSEKQTREI------------------- 94
           K  K+A    M         + G     + + MS ++  E+                   
Sbjct: 158 KPAKSARGTSMGKADTARERAAGGLNPVAGLDMSLEEAEELEAKLKQHKKDNKKKSAADG 217

Query: 95  ------SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
                  +Q  T +V+AL+ LI+S NPL KNG++W PHR          +    + ++Y 
Sbjct: 218 RYGELGGKQGATATVEALSALIESGNPLHKNGELWVPHRPDRPEKSEGGVPI-NLASEYE 276

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P GDQP AIA+L+ GI S E+ Q+LLGVTGSGKT+TMA+VI+  QRPA+++APNK LAAQ
Sbjct: 277 PKGDQPTAIAELVGGITSGEQTQVLLGVTGSGKTYTMAQVIQRTQRPALILAPNKTLAAQ 336

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           LY EFK+FFP NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR+LLE
Sbjct: 337 LYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRALLE 396

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           R+D I+V+SVSCIYGIGSVE+Y+ M   +++G+ ++Q++L++ LV  QYKR D    RGT
Sbjct: 397 RDDVIIVASVSCIYGIGSVETYTAMTFAIEVGERIDQRQLIADLVALQYKRNDAAFQRGT 456

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           FRV GD+IE+FP+H ED AWR+S+FG++IE+I+EF PLTG+K  +++++KIYANSHYVTP
Sbjct: 457 FRVRGDTIELFPAHYEDRAWRISLFGDEIEQITEFDPLTGKKSGDMKSVKIYANSHYVTP 516

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
           +PTL  A K IK ELK RL EL   GRLLEAQRLEQR  +DLEMLE TGSC  IENYSRY
Sbjct: 517 KPTLQQATKSIKAELKGRLEELNAHGRLLEAQRLEQRTIFDLEMLEATGSCAGIENYSRY 576

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
           LTGR PGEPPPTLFEY+P+++L+F DESHVTIPQI  MYRGDF RKATLAEYGFRLPSCM
Sbjct: 577 LTGRKPGEPPPTLFEYLPDNALVFADESHVTIPQIGAMYRGDFRRKATLAEYGFRLPSCM 636

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           DNRPLRFEEWN +RP ++ VSATPGSWE+E+  G+  EQ+IRPTGL+DPPVEIR A +QV
Sbjct: 637 DNRPLRFEEWNAMRPQSVAVSATPGSWEMEEAGGVFAEQVIRPTGLIDPPVEIRPAGSQV 696

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +D+  E+   AQ+G R L+T LTKRMAEDLTEYL+E  +RVRYMHS++ TLERIEI+RDL
Sbjct: 697 DDLLGEVREVAQKGYRTLVTTLTKRMAEDLTEYLHENGVRVRYMHSDIDTLERIEILRDL 756

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           RLG FDVLVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVIL
Sbjct: 757 RLGAFDVLVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVIL 816

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           YAD +T S++ AI ET RRR+KQL +N +H I P+SVK  I +++  +  +D  T +   
Sbjct: 817 YADNMTGSMERAIAETNRRRDKQLAYNTEHGITPESVKRSIGDIMQSVYEQDHVTVDAGF 876

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
            A++ SL      AH+  L KQM  AA +L+FE AAR+RDE+KRL+ +  
Sbjct: 877 -AEEGSLVGHNLAAHISDLEKQMRDAAADLDFETAARLRDEVKRLQETEL 925


>gi|319781919|ref|YP_004141395.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167807|gb|ADV11345.1| excinuclease ABC, B subunit [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 1056

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 485/777 (62%), Positives = 598/777 (76%), Gaps = 18/777 (2%)

Query: 36  EVDKTMVADAMRRIRSEAGKHRKNAAKR----------------MLIHQRENTASKGEFQ 79
           E  +    +  R +    G      +K+                M         +     
Sbjct: 63  EQIEQEAENEGRLVAKGDGGKSPKPSKKIPERSSSPGRSSRGTSMGGAASARERTAAGLN 122

Query: 80  SQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDIT 139
             + + +S +    ++  ++T +V AL+ LI+S NPL K+G +WTPHR          I 
Sbjct: 123 PVAGLDISLEDAETMASGSVTATVAALSALIESGNPLHKDGVLWTPHRPARPEKSEGGIA 182

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
             +M +++ P+GDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMAKVIE  QRPA+++
Sbjct: 183 I-KMVSEFEPAGDQPTAIKDLVEGVDNNDRTQVLLGVTGSGKTFTMAKVIEETQRPALIL 241

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+IEKESSINEQIDRMR
Sbjct: 242 APNKTLAAQLYSEFKKFFPENAVEYFVSYYDYYQPEAYVPRTDTFIEKESSINEQIDRMR 301

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSATRSLLER+D I+V+SVSCIYGIGSVE+Y+ M  Q++IGD ++Q+ LL+ LV QQYKR
Sbjct: 302 HSATRSLLERDDVIIVASVSCIYGIGSVETYTAMTFQMQIGDRLDQRALLADLVAQQYKR 361

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           QDI  +RG+FRV GD+IEIFP+HLED AWR+SMFG++IE+I+EF PLTGQK   ++++KI
Sbjct: 362 QDINFVRGSFRVRGDTIEIFPAHLEDRAWRISMFGDEIEQITEFDPLTGQKTGELKSVKI 421

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YANSHYVTPRPTLN A+K IKEELK RL+ELE+ GRLLEAQRLEQR  +DLEMLE TGSC
Sbjct: 422 YANSHYVTPRPTLNQAIKSIKEELKHRLVELERAGRLLEAQRLEQRCRFDLEMLEATGSC 481

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYLTGR PG+PPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAE
Sbjct: 482 AGIENYSRYLTGRQPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAE 541

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPSCMDNRPLRFEEW+ +RP ++ VSATPG+WE+EQ  G+  EQ+IRPTGL+DPPV
Sbjct: 542 YGFRLPSCMDNRPLRFEEWDAMRPLSVAVSATPGAWEMEQAGGVFAEQVIRPTGLIDPPV 601

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R A++QV+DV  EI    + G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ TL
Sbjct: 602 EVRPAKSQVDDVVGEIRDTTKAGYRTLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTL 661

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEI+RDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAA
Sbjct: 662 ERIEILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAA 721

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+ KVILYAD +T S++ A+ ET RRREKQ+E N  + I P+SVK +I +++D +  +
Sbjct: 722 RNVDGKVILYADQVTGSMERAMAETNRRREKQMEWNAANGITPESVKSRISDILDSVYEK 781

Query: 740 DAATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           D    +IS       ++     KAHL ++ KQM  AA NL+FE+AARIRDEIKRL+ 
Sbjct: 782 DHVRADISQFTDGAGAMMGNNLKAHLDAMEKQMRDAAANLDFEKAARIRDEIKRLRE 838


>gi|260467467|ref|ZP_05813636.1| excinuclease ABC, B subunit [Mesorhizobium opportunistum WSM2075]
 gi|259028749|gb|EEW30056.1| excinuclease ABC, B subunit [Mesorhizobium opportunistum WSM2075]
          Length = 1056

 Score =  939 bits (2427), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/778 (62%), Positives = 602/778 (77%), Gaps = 15/778 (1%)

Query: 31  EEKQLEVDKTMVADAMRRIRSEAGKHRKNAAKRMLIHQREN--TASKG----------EF 78
           E+ + E +K       +    ++ K  K   +R     R    T+  G            
Sbjct: 63  EQIEQEAEKEGR-QTGKGDGGKSPKPSKKIPERSAAPGRTARGTSMGGAATARERTAAGL 121

Query: 79  QSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDI 138
              + + +S ++   ++   +T +V AL+ LI+S NPL K+G +WTPHR          I
Sbjct: 122 NPVAGLDVSLEEAETMTSSGVTATVAALSALIESGNPLHKDGVLWTPHRPARPEKSEGGI 181

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
              +M +D+ P+GDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMAKVIE  QRPA++
Sbjct: 182 AI-KMVSDFEPAGDQPTAIKDLVEGVENNDRTQVLLGVTGSGKTFTMAKVIEETQRPALI 240

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+IEKESSINEQIDRM
Sbjct: 241 LAPNKTLAAQLYSEFKKFFPDNAVEYFVSYYDYYQPEAYVPRTDTFIEKESSINEQIDRM 300

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSATRSLLER+D I+V+SVSCIYGIGSVE+Y+ M  Q++IGD ++Q+ LL+ LV QQYK
Sbjct: 301 RHSATRSLLERDDVIIVASVSCIYGIGSVETYTAMTFQMQIGDRLDQRALLADLVAQQYK 360

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           RQDI  +RG+FRV GD+IEIFP+HLED AWR+SMFG++IE+I+EF PLTGQK   ++++K
Sbjct: 361 RQDINFVRGSFRVRGDTIEIFPAHLEDRAWRISMFGDEIEQITEFDPLTGQKTGELKSVK 420

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IYANSHYVTPRPTLN A+K IKEELK RL+ELE+ GRLLEAQRLEQR  +DLEMLE TGS
Sbjct: 421 IYANSHYVTPRPTLNQAIKSIKEELKQRLVELERAGRLLEAQRLEQRCRFDLEMLEATGS 480

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYLTGR PG+PPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLA
Sbjct: 481 CAGIENYSRYLTGRQPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLA 540

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPSCMDNRPLRFEEW+ +RP ++ VSATPG WE+EQ  G+  EQ+IRPTGL+DPP
Sbjct: 541 EYGFRLPSCMDNRPLRFEEWDAMRPLSVAVSATPGGWEMEQAGGVFAEQVIRPTGLIDPP 600

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R A++QV+DV  EI      G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ T
Sbjct: 601 VEVRPAKSQVDDVVGEIRETTNAGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDT 660

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LERIEI+RDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRA
Sbjct: 661 LERIEILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRA 720

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV+ KVILYAD +T S++ A+ ET RRREKQ+E N  + I P+SVK +I +++D +  
Sbjct: 721 ARNVDGKVILYADQVTGSMERAMAETNRRREKQMEWNAANGITPESVKSRISDILDSVYE 780

Query: 739 EDAATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +D    +IS       ++     KAHL ++ KQM  AA NL+FE+AARIRDEIKRL+ 
Sbjct: 781 KDHVRADISQFTDSAGAMMGNNLKAHLDAMDKQMRDAAANLDFEKAARIRDEIKRLRE 838


>gi|240850160|ref|YP_002971553.1| excinuclease ABC subunit B [Bartonella grahamii as4aup]
 gi|240267283|gb|ACS50871.1| excinuclease ABC subunit B [Bartonella grahamii as4aup]
          Length = 769

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 473/700 (67%), Positives = 572/700 (81%), Gaps = 1/700 (0%)

Query: 96  EQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPA 155
           +  +T +V+AL+ LI S NPL KNG +WTPHR          I  FQ++T + P+GDQP 
Sbjct: 2   KNGVTATVEALSALIASGNPLFKNGALWTPHRPVRPEKSEGGI-PFQLETPFEPAGDQPQ 60

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           AI  L++GI   E+ Q+LLGVTGSGKT+TMAK+IE  QRPA+++APNK LAAQLY EFK+
Sbjct: 61  AIKTLVEGIQKDERTQVLLGVTGSGKTYTMAKIIEKTQRPALILAPNKTLAAQLYGEFKS 120

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
           FFPHNAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR++LER+D I+V
Sbjct: 121 FFPHNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATRAVLERDDVIIV 180

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +SVSCIYGIGSVE+Y+ M  +++ GD + Q++LL+ LV QQY RQDI  IRG+FRV GD+
Sbjct: 181 ASVSCIYGIGSVETYTAMTFKIEKGDKLNQRKLLADLVSQQYYRQDINFIRGSFRVRGDT 240

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           IEIFP+HLED AWR+S+FG+++E I+EF PLTGQK  ++++IKIYANSHYVTPRPTLN A
Sbjct: 241 IEIFPAHLEDHAWRISLFGDEVETITEFDPLTGQKTGDLQSIKIYANSHYVTPRPTLNQA 300

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           MK IK EL  RL EL   GRLLEAQRLEQR  +DLEMLETTGSC  IENYSRYLTGR PG
Sbjct: 301 MKSIKMELAQRLDELNAAGRLLEAQRLEQRTIFDLEMLETTGSCSGIENYSRYLTGRKPG 360

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           EPPPTLFEYIP ++L+F+DESHVTIPQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRF
Sbjct: 361 EPPPTLFEYIPNNALVFIDESHVTIPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRF 420

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           EEW+ +RP TI VSATPG WE+EQ  G   EQIIRPTGL+DPP E+R A  QV+DV +EI
Sbjct: 421 EEWDAMRPQTIAVSATPGRWEIEQSHGTFAEQIIRPTGLIDPPTEVRPASNQVDDVVNEI 480

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               Q+G R L+TVLTKRMAEDLTEYL+E++IRVRYMHS++ TLERIEI+RDLRLG FDV
Sbjct: 481 RKTIQKGYRTLVTVLTKRMAEDLTEYLHEQDIRVRYMHSDIDTLERIEILRDLRLGTFDV 540

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+GINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYADTIT 
Sbjct: 541 LIGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADTITG 600

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
           SI+ A+ ET RRR+KQ+ +N++H+I P+S+K+ I ++++     +   T      ++ ++
Sbjct: 601 SIERALQETQRRRQKQIAYNEEHHITPKSIKKNIGDILNSGYENNHIRTITPDVIEKKNM 660

Query: 756 SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                 +H+K L K MH AA +LNFEEAAR+RDEIK+L+ 
Sbjct: 661 VGNNLASHIKHLEKLMHEAAADLNFEEAARLRDEIKQLQK 700


>gi|319408898|emb|CBI82555.1| excinuclease ABC, subunit B [Bartonella schoenbuchensis R1]
          Length = 855

 Score =  924 bits (2389), Expect = 0.0,   Method: Composition-based stats.
 Identities = 483/749 (64%), Positives = 581/749 (77%), Gaps = 8/749 (1%)

Query: 53  AGKHRKNAAKRMLIHQR-ENTASKGEFQSQSSISMSEKQT-----REISEQTMTPSVQAL 106
           A K  K + K    H       S           +S K          ++  +T +V+AL
Sbjct: 10  APKSNKTSCKIKTGHTAIAKQPSVTSSNPVIESDISFKAASDFTSHNATKTGVTATVEAL 69

Query: 107 ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS 166
           + LI SDNPL KNG +WTPHR          I  FQ+ T + P+GDQPAAI  L++G+  
Sbjct: 70  STLIASDNPLFKNGTVWTPHRPIRPEKSEGGI-PFQINTPFEPAGDQPAAIKALVEGVER 128

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            E+ Q+LLG+TGSGKT+TMAK+IE  QRPA+++APNK LAAQLY EFK+FFP NAVEYFV
Sbjct: 129 NERTQVLLGITGSGKTYTMAKIIEETQRPALILAPNKTLAAQLYGEFKSFFPKNAVEYFV 188

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
           SYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR++LER+D I+V+SVSCIYGIGS
Sbjct: 189 SYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATRAVLERDDVIIVASVSCIYGIGS 248

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE+Y+ M  Q++ GD + Q++LL+ LV QQY+RQDI   RG+FRV GD+IEIFPSHLED 
Sbjct: 249 VETYTAMTFQMQKGDKLNQRQLLADLVTQQYRRQDINFTRGSFRVRGDTIEIFPSHLEDR 308

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
           AWR+S+FG++IE I+EF PLTGQK  ++++IKIYANSHYVTPRPTLN A+K IK EL  R
Sbjct: 309 AWRISLFGDEIETITEFDPLTGQKTGDLQSIKIYANSHYVTPRPTLNQAIKAIKMELAQR 368

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L EL   GRLLEAQRLEQR  +DLEMLETTGSC  IENYSRYLTGRNPGEPPPT+FEYIP
Sbjct: 369 LDELNSVGRLLEAQRLEQRTIFDLEMLETTGSCSGIENYSRYLTGRNPGEPPPTMFEYIP 428

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
            ++L+F+DESHVTIPQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI
Sbjct: 429 NNALIFIDESHVTIPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTI 488

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
            VSATPG WE+EQ  G+ VEQIIRPTGL+DP  ++R AR QV+DV +EI    ++G R L
Sbjct: 489 AVSATPGRWEIEQTCGVFVEQIIRPTGLIDPLTQVRPARIQVDDVMNEIRKTIKKGYRTL 548

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +TVLTKRMAEDLTEYL+E NIRVRYMHS++ TLERIEI+RDLRLG FDVL+GINLLREGL
Sbjct: 549 VTVLTKRMAEDLTEYLHEHNIRVRYMHSDIDTLERIEILRDLRLGTFDVLIGINLLREGL 608

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           DIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+  VILYADTIT SI+ A+ ETTR
Sbjct: 609 DIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGHVILYADTITNSIERALQETTR 668

Query: 707 RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKS 766
           RR+KQ+ +N++H+I P S+++ I +V++ +   +         AQ   +       H++ 
Sbjct: 669 RRQKQIAYNEEHHITPTSIQKNIGDVLNSVYENNHHADIPDFIAQNNKVD-NNLANHIQH 727

Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           L K M  AA NLNFEEAAR+RDEIKRL+ 
Sbjct: 728 LEKSMREAAANLNFEEAARLRDEIKRLQK 756


>gi|254470279|ref|ZP_05083683.1| excinuclease ABC, B subunit, putative [Pseudovibrio sp. JE062]
 gi|211960590|gb|EEA95786.1| excinuclease ABC, B subunit, putative [Pseudovibrio sp. JE062]
          Length = 946

 Score =  924 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/756 (59%), Positives = 563/756 (74%), Gaps = 20/756 (2%)

Query: 61  AKRMLIHQRENTASKGEFQSQSSISMSEKQTREI------------------SEQTMTPS 102
              M         +KG     + + +S +   ++                  +    T +
Sbjct: 99  GTSMGATSDPRERAKGGLNPIAGLDISLEDAEKLLDTHVKETKKKRKKAKEETISGATAT 158

Query: 103 VQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLK 162
           VQALARLI+           W PHR          +  F +++++ P GDQP AIA L  
Sbjct: 159 VQALARLIEQGRSDETGEDAWVPHRPERPQKSEGGVA-FSLESEFEPKGDQPTAIADLKA 217

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           G+   +K Q+LLGVTGSGKTFTMA++I   QRPA+++APNK LAAQLY EFK FFP+NAV
Sbjct: 218 GLADGDKTQVLLGVTGSGKTFTMAQLISQTQRPALILAPNKTLAAQLYGEFKAFFPNNAV 277

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
           EYFVSYYDYYQPEAYV RTDT+IEKESSINEQIDRMRHSATR+LLER+D I+V+SVSCIY
Sbjct: 278 EYFVSYYDYYQPEAYVARTDTFIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIY 337

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           GIGSVE+Y+ M  +L++G+ +EQ++LL+ LV   YKR D    RGTFRV GD+IE+FP+H
Sbjct: 338 GIGSVETYTAMTFKLEVGEKIEQRQLLADLVALHYKRNDAAFQRGTFRVRGDTIEVFPAH 397

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            ED AWR+S++G++IE I+EF PLTG+K   ++ +KIYANSHYVTP+PTLN A+K IK+E
Sbjct: 398 YEDRAWRISLWGDEIESITEFDPLTGKKSGELQLVKIYANSHYVTPKPTLNQAIKSIKKE 457

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
           LK RL EL + GRLLEAQRL+QR T+DLEM+E TG+C  IENYSRYLTGR PGEPPPTLF
Sbjct: 458 LKHRLDELNEHGRLLEAQRLDQRCTFDLEMMEATGACAGIENYSRYLTGRAPGEPPPTLF 517

Query: 463 EYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLR 522
           EY+P+++L+F+DESHVT+PQI  MYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +R
Sbjct: 518 EYLPDNALVFIDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMR 577

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
           P T+ VSATPG WE+++  G+  EQ+IRPTGL DP +EIR A+TQV+D+  E+   A  G
Sbjct: 578 PQTVAVSATPGGWEMDESGGVFAEQVIRPTGLTDPDIEIRPAKTQVDDLLGEVREKAANG 637

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R L+T LTKRMAEDLTEYL+E  +RVRYMHS++ TLERIEIIRDLRLG FDVL+GINLL
Sbjct: 638 FRTLVTTLTKRMAEDLTEYLHENGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLIGINLL 697

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           REGLDIPEC LVAILDADKEGFLRS+TSL+QTIGRAARNV+ KVILYAD +T S++ AI 
Sbjct: 698 REGLDIPECALVAILDADKEGFLRSETSLVQTIGRAARNVDGKVILYADNMTGSMERAIA 757

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKA 762
           ET RRR KQ  +N++H I P+SVK  I ++++ +  +D  + +     +  ++     KA
Sbjct: 758 ETNRRRAKQEAYNEEHGITPESVKRSIGDILESVYEQDHVSVDAGFAEEGATI-GHNLKA 816

Query: 763 HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           H++ L KQM  AA +L FE AAR+RDE+KRL+ +  
Sbjct: 817 HIEDLEKQMREAAADLEFETAARLRDEVKRLQETEL 852


>gi|319403836|emb|CBI77422.1| excinuclease ABC, subunit B [Bartonella rochalimae ATCC BAA-1498]
          Length = 806

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/755 (63%), Positives = 587/755 (77%), Gaps = 8/755 (1%)

Query: 42  VADAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSSISMSEKQTREISE-QTMT 100
                ++I   A        +          +    F+     +++ K ++ I++  ++T
Sbjct: 6   SKTTQKQINQRATDPSAVMKQCSKAKLHTVKSHNASFE-----TINTKPSKNITKTNSVT 60

Query: 101 PSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQL 160
            +V+AL+ LI   NPL KNG +WTPHR          I  FQ++T + P+GDQP AI  L
Sbjct: 61  ATVEALSALIALGNPLFKNGALWTPHRPIRPEKSEGGI-PFQIKTSFQPAGDQPIAIKSL 119

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           ++GI   E+ Q+LLGVTGSGKT+TMAK+IE  QRPA+++APNK LAAQLY EFKNFFP+N
Sbjct: 120 VEGIKRNERTQVLLGVTGSGKTYTMAKIIEKTQRPALILAPNKTLAAQLYGEFKNFFPNN 179

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
           AVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR++LER+D I+++SVSC
Sbjct: 180 AVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATRAVLERDDVIIIASVSC 239

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           IYGIGSVE+Y+ M  Q++ GD ++Q++LL+ LV QQY+RQDI  +RG+FRV GD+IEIFP
Sbjct: 240 IYGIGSVETYTAMTFQMQKGDKLDQQKLLTDLVSQQYQRQDINFVRGSFRVRGDTIEIFP 299

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
           +HLED AWR+S+FG++IE I+EF PLTGQK  ++++IKIYANSHYVTPRPTLN A+K IK
Sbjct: 300 AHLEDRAWRISLFGDEIETITEFDPLTGQKTADLQSIKIYANSHYVTPRPTLNQAIKSIK 359

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
            EL  RL EL   GRLLEAQRLEQR  +DLEMLETTGSC  IENYSRYLTGR PGEPPPT
Sbjct: 360 MELVKRLDELNAAGRLLEAQRLEQRTIFDLEMLETTGSCSGIENYSRYLTGRKPGEPPPT 419

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           LFEYIP  +L+F+DESHVTIPQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ 
Sbjct: 420 LFEYIPSHALVFIDESHVTIPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDA 479

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           +RP TI VSATPG WE+EQ QGI VEQ+IRPTGL+DPP EIR  +TQV+D  +EI+   +
Sbjct: 480 MRPQTIAVSATPGRWEIEQSQGIFVEQVIRPTGLIDPPTEIRPVKTQVDDAVNEIHQTIK 539

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G R L+TVLTKRMAEDLTEYL+E+NIRVRYMHS++ TLERIEI+RDLRLG FDVL+GIN
Sbjct: 540 KGYRTLITVLTKRMAEDLTEYLHEQNIRVRYMHSDINTLERIEILRDLRLGTFDVLIGIN 599

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           LLREGLDIPECG VAI DADKEGFLRS+TSLIQ IGRAARNV S+VILYADTIT SIQ A
Sbjct: 600 LLREGLDIPECGFVAIFDADKEGFLRSETSLIQMIGRAARNVESRVILYADTITGSIQRA 659

Query: 701 IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG 760
           + ET RRR+KQ+ +NK+H I P S+K+ I +++  +  E+     IS    Q +      
Sbjct: 660 LQETKRRRQKQIAYNKEHQITPTSIKKNIDDILSSV-CENNHNVKISHFITQNNKVGNNL 718

Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             H++ L K M  AA++LNFEEAA+ RDEIKRL+ 
Sbjct: 719 TNHIQHLEKLMRKAANDLNFEEAAQFRDEIKRLQE 753


>gi|319405276|emb|CBI78890.1| excinuclease ABC, subunit B [Bartonella sp. AR 15-3]
          Length = 807

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/731 (65%), Positives = 580/731 (79%), Gaps = 8/731 (1%)

Query: 71  NTASKGEFQSQSSISMSEKQTREISE------QTMTPSVQALARLIQSDNPLLKNGKIWT 124
              S  +  +  +  +S + T  IS         +T +V+ L+ LI S NPL KNG +WT
Sbjct: 25  KQCSNTKLHTIKNHDVSSETTNTISPKNITTTNGVTATVETLSALIASSNPLFKNGALWT 84

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFT 184
           PHR          I  FQ++T + P+GDQP AI  L++GI  +E+ Q+LLGVTGSGKT+T
Sbjct: 85  PHRPIRPEKSEGGIQ-FQIKTSFQPAGDQPIAIKSLVEGIKKKERTQVLLGVTGSGKTYT 143

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           MAK+IE  QRPA+++APNK LAAQLY EFKNFFP+NAVEYFVSYYDYYQPEAYV R+DTY
Sbjct: 144 MAKIIEKTQRPALILAPNKTLAAQLYGEFKNFFPNNAVEYFVSYYDYYQPEAYVARSDTY 203

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304
           IEKE+SINEQIDRMRH+ATR++LER+D I+++SVSCIYGIGSVE+Y+ M  Q++ G+ ++
Sbjct: 204 IEKEASINEQIDRMRHAATRAVLERDDVIIIASVSCIYGIGSVETYTAMTFQMQKGNKLD 263

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           Q++LL+ LV QQY+RQDI  +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF 
Sbjct: 264 QQKLLTDLVAQQYQRQDINFVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFD 323

Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
           PLTGQK  ++++IKIYANSHYV PRPTLN A+K IK EL  RL EL   GRLLEAQRLEQ
Sbjct: 324 PLTGQKTGDLQSIKIYANSHYVIPRPTLNQAIKSIKIELTKRLDELNAAGRLLEAQRLEQ 383

Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484
           R  +DLEMLETTGSC  IENYSRYLTGR PGEPPPTLFEYIP  +L+F+DESHVTIPQI 
Sbjct: 384 RTIFDLEMLETTGSCPGIENYSRYLTGRKPGEPPPTLFEYIPNHALVFIDESHVTIPQIG 443

Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544
           GMYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ +GI 
Sbjct: 444 GMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTIAVSATPGHWEIEQSRGIF 503

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           VEQIIRPTGL+DPP EIR  +TQV+DV +EI+   ++G R L+TVLTKRMAEDLTEYL+E
Sbjct: 504 VEQIIRPTGLIDPPTEIRPVKTQVDDVINEIHQTIKKGYRTLITVLTKRMAEDLTEYLHE 563

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           +NIRVRYMHS++ TLERIEI+RDLRLG FDVL+GINLLREGLDIPECG VAI DADKEGF
Sbjct: 564 QNIRVRYMHSDINTLERIEILRDLRLGTFDVLIGINLLREGLDIPECGFVAIFDADKEGF 623

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
           LRS+TSLIQ IGRAARNV S+VILYAD IT SI+ A+ ET RRREKQ+ +N++H I P S
Sbjct: 624 LRSETSLIQMIGRAARNVESRVILYADKITGSIERALQETKRRREKQIAYNEEHQITPTS 683

Query: 725 VKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           +K+ I +++  +   D     IS    Q +        H++ L+K M  AAD+LNFEEAA
Sbjct: 684 IKKNIDDILSSVYENDH-NIKISHFITQNNKVGDNLTNHIQHLKKLMRKAADDLNFEEAA 742

Query: 785 RIRDEIKRLKS 795
           ++RDEIKRL+ 
Sbjct: 743 QLRDEIKRLQE 753


>gi|154246683|ref|YP_001417641.1| excinuclease ABC subunit B [Xanthobacter autotrophicus Py2]
 gi|154160768|gb|ABS67984.1| excinuclease ABC, B subunit [Xanthobacter autotrophicus Py2]
          Length = 866

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/749 (61%), Positives = 576/749 (76%), Gaps = 14/749 (1%)

Query: 59  NAAKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQ---------TMTPSVQALARL 109
            A++   + +R       E   Q ++     Q+  ++             + +VQAL++L
Sbjct: 3   KASRPGKLGERSQ--RHFEPAPQQALDPELAQSLGLAPGDVSLDFGSAGASATVQALSQL 60

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169
           I++  P + NG+ W PHR          ++ F M++D+ P+GDQP AIA+L     + E+
Sbjct: 61  IENGRPEV-NGQTWVPHRPPRPEKSEGGVS-FIMKSDFEPAGDQPQAIAELCAQAQAGER 118

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
            Q+LLGVTGSGKTFTMAKVIE +QRPAIV+APNK LAAQLY EFK+FFP NAVEYFVSYY
Sbjct: 119 DQVLLGVTGSGKTFTMAKVIEQLQRPAIVLAPNKTLAAQLYGEFKSFFPDNAVEYFVSYY 178

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
           DYYQPEAYVPRTDTYIEKESSINEQIDRMRH+ATR+LLER+D I+V+SVSCIYGIGSVE+
Sbjct: 179 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVET 238

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           YS M   +K+G+ ++Q+ LL+ LV  QYKR      RGTFRV GD +EIFP+H ED AWR
Sbjct: 239 YSAMTFDIKVGERIDQRGLLADLVALQYKRIQSDFARGTFRVRGDVVEIFPAHYEDRAWR 298

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           VS+FG+++E I+EF PLTG K  +++++++YA SHYVTPRPTL  A+  IK ELKMRL E
Sbjct: 299 VSLFGDEVESIAEFDPLTGHKSGDMKSVRVYAASHYVTPRPTLIQAITGIKAELKMRLDE 358

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
           L K GRLLEAQRLEQR  YDLEM+E TGSC  IENYSR+LTGR PGEPPPTLFEY+P++S
Sbjct: 359 LYKMGRLLEAQRLEQRTRYDLEMMEATGSCAGIENYSRWLTGRKPGEPPPTLFEYVPDNS 418

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           L+F+DESHVT+PQI  MYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW  +RP T+ VS
Sbjct: 419 LVFIDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWEAMRPQTVHVS 478

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
           ATPG+WE+E+  G+ VEQ+IRPTGL+DPPVE+R ARTQV+D+  E+   A +G R L+TV
Sbjct: 479 ATPGTWEMEKTGGVFVEQVIRPTGLIDPPVEVRPARTQVDDLLGEVRAFAAKGYRTLVTV 538

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           LTKRMAEDLTEYL+E  IRVRYMHS++ T+ERIEIIRDLRLG FDVL+GINLLREGLDIP
Sbjct: 539 LTKRMAEDLTEYLHEHGIRVRYMHSDIDTIERIEIIRDLRLGAFDVLIGINLLREGLDIP 598

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           ECGLVAILDADKEGFLRS+TSL+QTIGRAARNV+ +VILYAD +T S++ A+ ET+RRRE
Sbjct: 599 ECGLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADRVTGSMERAMAETSRRRE 658

Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRK 769
           KQ+ +N  H I P+SVK+ I ++++ +   D    +  +  +  +      KA +  L K
Sbjct: 659 KQVAYNTAHGITPESVKKAIGDILNSVYERDHVQVDAGLAEEGAAF-GHNLKAVMADLEK 717

Query: 770 QMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           +M  AA +L+FE AAR+RDEI+RL+++  
Sbjct: 718 RMRAAAADLDFETAARLRDEIRRLEATEL 746


>gi|158424751|ref|YP_001526043.1| excinuclease ABC subunit B [Azorhizobium caulinodans ORS 571]
 gi|158331640|dbj|BAF89125.1| excinuclease ABC B subunit [Azorhizobium caulinodans ORS 571]
          Length = 876

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/749 (61%), Positives = 574/749 (76%), Gaps = 14/749 (1%)

Query: 59  NAAKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQ---------TMTPSVQALARL 109
            A++   + +R       E      +  +  Q+  ++             + +VQAL++L
Sbjct: 3   KASRPGKLGERSQ--RHFEPAPAQPLDPALAQSLGLNPGDLSVDFESSGASATVQALSQL 60

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169
           I++  P + NG+ W PHR          I  F M++D+ PSGDQP AI +L +     E+
Sbjct: 61  IENGRPEV-NGQTWVPHRPPRPEKSEGGIR-FVMKSDFQPSGDQPQAIKELTEAARQGER 118

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
            Q+LLGVTGSGKTFTMAKVIE +QRPAIV+APNK LAAQLY EFK+FFP NAVEYFVSYY
Sbjct: 119 DQVLLGVTGSGKTFTMAKVIETLQRPAIVLAPNKTLAAQLYGEFKSFFPDNAVEYFVSYY 178

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
           DYYQPEAYVPRTDTYIEKESSINEQIDRMRH+ATRSLLER+D I+V+SVSCIYGIGSVE+
Sbjct: 179 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHAATRSLLERDDVIIVASVSCIYGIGSVET 238

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           Y+ M  +L++G+ ++Q++LL+ LV  QYKR      RGTFRV GD +EIFP+H ED AWR
Sbjct: 239 YASMTFKLEVGERIDQRQLLADLVALQYKRIQSDFARGTFRVRGDVVEIFPAHYEDRAWR 298

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           +S+FG+++E I EF PLTG K  +++++K+YA+SHYVTPRPTL  A+  IK ELK RL E
Sbjct: 299 ISLFGDEVESIVEFDPLTGHKTGDMKSVKVYASSHYVTPRPTLIQAITGIKAELKHRLDE 358

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
           L K GRLLEAQRLEQR  YD+EM+E TGSC  IENYSR+LTGR PGEPPPTLFEY+P+D+
Sbjct: 359 LYKMGRLLEAQRLEQRTRYDIEMMEATGSCAGIENYSRWLTGRKPGEPPPTLFEYVPDDA 418

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++F+DESHVT+PQI  MYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP T+ VS
Sbjct: 419 MVFIDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQTVHVS 478

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
           ATPG WE+++  G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+  E+   A +G R L+TV
Sbjct: 479 ATPGPWEMDRTGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLLGEVRATAAKGYRSLVTV 538

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           LTKRMAEDLTEYL+E  IRVRYMHS++ T+ERIEIIRDLRLG FDVL+GINLLREGLDIP
Sbjct: 539 LTKRMAEDLTEYLHENGIRVRYMHSDIDTIERIEIIRDLRLGAFDVLIGINLLREGLDIP 598

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           ECGLVAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD  T S++ A+ ET RRRE
Sbjct: 599 ECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADHETGSMKRAMAETARRRE 658

Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRK 769
           KQ+ +N +H I P+SVK+ I ++++ +   D    +  +  +  +      KA +  L K
Sbjct: 659 KQIAYNTEHGITPESVKKAIGDILNSVYERDHVAVDSGLAEEGAAF-GHNLKAIMADLEK 717

Query: 770 QMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           +M  AA +L+FEEAAR+RDEIKRL+++  
Sbjct: 718 RMRAAAADLDFEEAARLRDEIKRLQATEL 746


>gi|299134277|ref|ZP_07027470.1| excinuclease ABC, B subunit [Afipia sp. 1NLS2]
 gi|298591024|gb|EFI51226.1| excinuclease ABC, B subunit [Afipia sp. 1NLS2]
          Length = 959

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/781 (58%), Positives = 573/781 (73%), Gaps = 28/781 (3%)

Query: 45  AMRRIRSEAGKHRKNAAKRMLIHQRENTASKG--------------------EFQSQSSI 84
             RR   EA  HR   +      Q      +G                    E   Q   
Sbjct: 60  WDRRNGGEAAAHRARKSTPKTFDQDSKPRPQGFDEAPQANYGTSATIPTLDPELAKQLGY 119

Query: 85  SMSEKQT-----REISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDIT 139
            + +  +      ++    +  +  AL  LI+   P  +  KIWTPHR          + 
Sbjct: 120 DVEDDDSFRPARNKMESLGVKATADALESLIKEGRPEFRGDKIWTPHRPPRPEKSEGGVR 179

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F+++++Y P GDQP AIA+L++GI+ +++ Q+LLGVTGSGKT+TMA+VI A QRPA+++
Sbjct: 180 -FELKSEYQPKGDQPQAIAELVEGINRKDRTQVLLGVTGSGKTYTMAQVIAATQRPALIL 238

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMR
Sbjct: 239 APNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMR 298

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M   LK G+ ++Q+++++ LV  QYKR
Sbjct: 299 HSATRALLERDDVIIVASVSCIYGIGSVETYTAMTFSLKKGERIDQRQIIADLVALQYKR 358

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD+I+IFP+H ED AWRV++FG+++E I EF PLTG K   +E +KI
Sbjct: 359 TQADFARGTFRVRGDTIDIFPAHYEDRAWRVNLFGDEVESIEEFDPLTGHKSDELEFVKI 418

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YANSHYVTPRPTL  A+K IK ELK RL +L  +GRLLEAQRLEQR T+DLEM+E TGSC
Sbjct: 419 YANSHYVTPRPTLIQAIKGIKSELKWRLDQLHAQGRLLEAQRLEQRTTFDLEMMEATGSC 478

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHVTIPQI GM++GDF RKATLAE
Sbjct: 479 AGIENYSRYLTGRKPGEPPPTLFEYVPDNALVFADESHVTIPQIGGMFKGDFRRKATLAE 538

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPSCMDNRPLRFEEW+ +RP ++ VSATP +WE+ +  G+ VEQ+IRPTGL+DPPV
Sbjct: 539 YGFRLPSCMDNRPLRFEEWDMMRPQSVAVSATPAAWEMNESGGVFVEQVIRPTGLIDPPV 598

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            IR ARTQV+D+  E+   A +G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+
Sbjct: 599 NIRPARTQVDDLLGEVRATAAKGYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTI 658

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLRLG FD LVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAA
Sbjct: 659 ERIEIIRDLRLGAFDALVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAA 718

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+ KVILYAD +T S++ AI ET RRREKQ+ +N+ + I P+SVK+ I ++++ +   
Sbjct: 719 RNVDGKVILYADQMTGSMERAIAETDRRREKQVAYNEANGITPESVKKSIGDILNSVYER 778

Query: 740 DAATTNISID--AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           D     +     A  +       +A L  L  +M  AA +LNFEEAAR+RDE+KRL+++ 
Sbjct: 779 DHVLVEVGDGGMADDVISIGHNFEAVLADLETRMREAAADLNFEEAARLRDEVKRLRATE 838

Query: 798 Y 798
            
Sbjct: 839 M 839


>gi|49475895|ref|YP_033936.1| excinuclease ABC subunit B [Bartonella henselae str. Houston-1]
 gi|49238703|emb|CAF27955.1| Excinuclease ABC subunit b [Bartonella henselae str. Houston-1]
          Length = 770

 Score =  917 bits (2369), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/700 (68%), Positives = 568/700 (81%), Gaps = 1/700 (0%)

Query: 96  EQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPA 155
           +  +T +V+AL+ LI S NPL KNG +WTPHR          I  FQ++T +  SGDQP 
Sbjct: 2   KNGVTATVEALSALIASGNPLFKNGALWTPHRPVRPEKSEGGI-PFQLETSFEASGDQPQ 60

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           AI  L++GI   E+ Q+LLGVTGSGKT+TMAK+IE  QRPA+++APNK LAAQLY EFK+
Sbjct: 61  AIKTLVEGIEKNERTQVLLGVTGSGKTYTMAKIIEKTQRPALILAPNKTLAAQLYGEFKS 120

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
           FFPHNAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR++LER+D I+V
Sbjct: 121 FFPHNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATRAVLERDDVIIV 180

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +SVSCIYGIGSVE+Y+ M +Q+K GD + Q++ L+ LV Q Y RQDI  IRG+FRV GD+
Sbjct: 181 ASVSCIYGIGSVETYTAMTLQIKKGDKLNQRQFLADLVSQHYYRQDINFIRGSFRVRGDT 240

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           IEIFP+HLED AWR+S+FG+++E I+EF PLTGQK  ++++IKIYANSHYV PRPTLN A
Sbjct: 241 IEIFPAHLEDRAWRISLFGDEVETITEFDPLTGQKTGDLQSIKIYANSHYVIPRPTLNQA 300

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           MK IK EL  RL EL K GRLLEAQRLEQR  +DLEMLETTGSC  IENYSRYLTGR PG
Sbjct: 301 MKAIKTELVQRLDELNKAGRLLEAQRLEQRTMFDLEMLETTGSCAGIENYSRYLTGRQPG 360

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           EPPPTLFEYIP ++L+F+DESHVTIPQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRF
Sbjct: 361 EPPPTLFEYIPNNALVFIDESHVTIPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRF 420

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           EEW+ +RP TI VSATPG WE+EQ  GI  EQIIRPTGLVDPP E+R A +QV+DV +EI
Sbjct: 421 EEWDAMRPQTIAVSATPGRWEIEQSHGIFAEQIIRPTGLVDPPTEVRPASSQVDDVVNEI 480

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   Q+G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ TLERIEI+RDLRLG FDV
Sbjct: 481 HKTIQKGYRTLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTLERIEILRDLRLGAFDV 540

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+GINLLREGLDIPECG VAILDADKEGFLRS+TSL+QTIGRAARNV+ +VILYAD IT 
Sbjct: 541 LIGINLLREGLDIPECGFVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADIITG 600

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
           SI+ A+ ET RRREKQ+ +N+KH+I P S+K+ I ++++         TNI     Q S 
Sbjct: 601 SIERALQETQRRREKQIAYNEKHHIKPTSIKKNIDDILNSGGENGYTHTNIPDFITQNSK 660

Query: 756 SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +      H++ L K M  AA NL+FEEAAR+RDEIK+L+ 
Sbjct: 661 TGNNLAKHIQYLEKSMREAAANLHFEEAARLRDEIKKLQK 700


>gi|304393621|ref|ZP_07375549.1| excinuclease ABC subunit B [Ahrensia sp. R2A130]
 gi|303294628|gb|EFL89000.1| excinuclease ABC subunit B [Ahrensia sp. R2A130]
          Length = 938

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 474/773 (61%), Positives = 587/773 (75%), Gaps = 11/773 (1%)

Query: 31  EEKQLEVDKTMVADAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSSISMSEKQ 90
           +  +        A A  +   + G  R      +                 + + +S ++
Sbjct: 74  KAAKYRAKVDAKAQAKPKKGDKVGTKRTGGGTIIGGSNDVKERVAAGLNPIAGLDVSAEE 133

Query: 91  TREI-SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHP 149
             E+ S   +T +VQAL+ LI+     +K G IW PHR     +   D   F + +++ P
Sbjct: 134 ALEMASTSGVTATVQALSELIEHGRDEMK-GDIWVPHRPDRP-DKDPDQKPFTVVSEFEP 191

Query: 150 SGDQPAAIAQLLKGIHS-------REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
            GDQP AI +L+ G+ S        E+ Q+LLGVTGSGKTFTMAKVIE  QRPA+++APN
Sbjct: 192 KGDQPTAIKELVGGLKSEAGSNQGGERTQVLLGVTGSGKTFTMAKVIEETQRPALILAPN 251

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY E K+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESS+NEQIDRMRHSA
Sbjct: 252 KTLAAQLYGEMKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSVNEQIDRMRHSA 311

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TRSLLER+D I+V+SVSCIYGIGSVE+Y+ M  Q+KIGD++ Q++LL+ LV QQYKR+D 
Sbjct: 312 TRSLLERDDTIIVASVSCIYGIGSVETYTAMTFQMKIGDTLNQRQLLADLVAQQYKRRDA 371

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
              RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  N++++KIYAN
Sbjct: 372 DFQRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTDNLKSVKIYAN 431

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IK EL  RL EL + GR LEAQRLEQR+ +D+EM+E TGSC SI
Sbjct: 432 SHYVTPRPTLNQAVKEIKLELTWRLEELTRAGRFLEAQRLEQRVKFDIEMIEATGSCASI 491

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHVTIPQI GMYRGDF RKATLAEYGF
Sbjct: 492 ENYSRYLTGRKPGEPPPTLFEYLPDNALVFADESHVTIPQIGGMYRGDFRRKATLAEYGF 551

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ  G+  EQ+IRPTGL+DPPVEIR
Sbjct: 552 RLPSCMDNRPLRFEEWDAMRPQTICVSATPGGWEMEQAGGVFAEQVIRPTGLIDPPVEIR 611

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           +A+TQV+DV DEI   + QG R L+TVLTKRMAEDLTEY++E+ I+VRYMHS++ TLERI
Sbjct: 612 TAKTQVDDVVDEIKQVSAQGYRTLVTVLTKRMAEDLTEYMHEQGIKVRYMHSDIDTLERI 671

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG FDVL+GINLLREGLDIPECGLV ILDADKEGFLRS+TSL+QTIGRAARNV
Sbjct: 672 EIIRDLRLGAFDVLIGINLLREGLDIPECGLVTILDADKEGFLRSETSLVQTIGRAARNV 731

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + +VILYAD IT S++ A+ ET RRREKQ  +N+KH I P S+K  I +++  +   D  
Sbjct: 732 DGRVILYADRITGSMERAMAETDRRREKQEAYNEKHGITPASIKRDISDILGSVYEGDHV 791

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             +  + A++ +L     KAHL ++ K M  AA +L+FE+AA +RDEIKRL++
Sbjct: 792 RVDAGL-AKEGALVGNNMKAHLAAMEKDMRDAAADLDFEKAANLRDEIKRLQA 843


>gi|121602199|ref|YP_989264.1| excinuclease ABC subunit B [Bartonella bacilliformis KC583]
 gi|120614376|gb|ABM44977.1| excinuclease ABC, B subunit [Bartonella bacilliformis KC583]
          Length = 780

 Score =  915 bits (2365), Expect = 0.0,   Method: Composition-based stats.
 Identities = 485/764 (63%), Positives = 591/764 (77%), Gaps = 17/764 (2%)

Query: 32  EKQLEVDKTMVADAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSSISMSEKQT 91
           +K  +  KT    +     S +  H K A  ++    +    S+G               
Sbjct: 11  KKINKASKTGSCVSAIEKSSTSYFHNKIAEPKISRKIKNVPISEGITT------------ 58

Query: 92  REISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSG 151
               E+ +T +V+AL+ LI S NPL KNG++WTPHR       S+  T FQ++T + P+G
Sbjct: 59  ----EKGVTATVEALSALIASGNPLFKNGELWTPHRPIRPEK-SESGTPFQIKTPFEPAG 113

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQP AI  L++GI   E+ Q+LLGVTGSGKT+TMAK+IE  QRPA+++APNK LAAQLY 
Sbjct: 114 DQPTAIETLVEGIKKNERTQVLLGVTGSGKTYTMAKIIEITQRPALILAPNKTLAAQLYG 173

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           EFKNFFPHNAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR++LER+D
Sbjct: 174 EFKNFFPHNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATRAVLERDD 233

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            I+V+SVSCIYGIGSVE+Y+ M  Q+K GD + Q++LL+ LV QQY+RQDI  +RG+FRV
Sbjct: 234 VIIVASVSCIYGIGSVETYTAMTFQIKKGDRLNQRQLLADLVAQQYQRQDINFVRGSFRV 293

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD+IEIFP+HLED +WR+S+FG+++E I+EF PLTG+K  ++++IKIYANSHYVTPRPT
Sbjct: 294 RGDTIEIFPAHLEDRSWRISLFGDEVETITEFDPLTGKKTDDLQSIKIYANSHYVTPRPT 353

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           LN A+K IK EL  RL EL    RLLEAQRLEQR  +DLEMLETTGSC  IENYSRYLTG
Sbjct: 354 LNQAIKSIKMELAARLDELNSADRLLEAQRLEQRTRFDLEMLETTGSCSGIENYSRYLTG 413

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
           R PGEPPPTLFEYIP+++L+F+DESHVTIPQISGMYRGDF RKATLAEYGFRLPSCMDNR
Sbjct: 414 RKPGEPPPTLFEYIPDNALVFIDESHVTIPQISGMYRGDFRRKATLAEYGFRLPSCMDNR 473

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           PLRFEEW+ +RP TI VSATPG WE+EQ  G   EQ+IRPTGLVDP  EIR ARTQV+DV
Sbjct: 474 PLRFEEWDAMRPQTIAVSATPGRWEIEQTCGTFAEQVIRPTGLVDPLTEIRPARTQVDDV 533

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             EI    ++G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ TLERIEI+RDLRLG
Sbjct: 534 VHEIRTTIKKGYRTLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTLERIEILRDLRLG 593

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
            FDVL+GINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD
Sbjct: 594 TFDVLIGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYAD 653

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
           TIT SI  A+ ET RRR+KQ+++N+KH+I P SVK+ I ++++ +   +    +I     
Sbjct: 654 TITGSIARALQETKRRRQKQIDYNQKHHIIPTSVKKNISDILNLVGDNNPIGKDIPNFVT 713

Query: 752 QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           Q + +      H+K L K M  AA +LNFEEAAR+RD IK+L+ 
Sbjct: 714 QQNRTGDTLTNHIKRLEKLMREAAADLNFEEAARLRDNIKQLQK 757


>gi|323138209|ref|ZP_08073281.1| excinuclease ABC, B subunit [Methylocystis sp. ATCC 49242]
 gi|322396461|gb|EFX98990.1| excinuclease ABC, B subunit [Methylocystis sp. ATCC 49242]
          Length = 852

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/703 (64%), Positives = 560/703 (79%), Gaps = 5/703 (0%)

Query: 97  QTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAA 156
             +  +  +LA L++  +P L++ K W PHR          +  F++ +DY P GDQPAA
Sbjct: 80  GGVQATADSLADLLRLGDPNLRDKKPWVPHRPERPEKSEGGVK-FELVSDYTPKGDQPAA 138

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           IA+L+KGI ++E+ Q+LLGVTGSGKTFTMA VI A QRPA+++APNK LAAQLY EFK+F
Sbjct: 139 IAELVKGIEAQERDQVLLGVTGSGKTFTMASVIAATQRPALILAPNKTLAAQLYGEFKSF 198

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           FP+NAVEYFVSYYDYYQPEAYVPR+DTYIEKESS+NEQIDRMRH+ATR+LLER+D I+V+
Sbjct: 199 FPNNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSVNEQIDRMRHAATRALLERDDVIIVA 258

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           SVSCIYGIGSVE+Y+ M   +++G+ +EQ++L++ LV   Y+R      RGTFRV GD++
Sbjct: 259 SVSCIYGIGSVETYTAMTFSVQLGEKLEQRQLVTDLVALHYRRVQADFTRGTFRVRGDTV 318

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++FP+H ED AWRVS FG+++E I EF PLTG+K  ++E +KIYANSHYVTPRPTL  ++
Sbjct: 319 DVFPAHYEDRAWRVSFFGDEVESICEFDPLTGKKTVDLEFVKIYANSHYVTPRPTLLQSI 378

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           K IK+EL+ RL EL + GRLLEAQRLEQR  +DLEM+E TG+C  IENYSRYLTGR PGE
Sbjct: 379 KAIKDELRARLDELNRSGRLLEAQRLEQRTRFDLEMMEATGACAGIENYSRYLTGRKPGE 438

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
           PPPTLFEY+P+++L+F DESHV+IPQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRFE
Sbjct: 439 PPPTLFEYLPDNALVFADESHVSIPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFE 498

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           EW+ +RP T+ VSATPG+WELEQ  G+ VEQ+IRPTGL+DPPVE+RSARTQV+D+ DE+ 
Sbjct: 499 EWDAMRPQTVSVSATPGNWELEQTGGVFVEQVIRPTGLIDPPVEVRSARTQVDDLLDEVR 558

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +Q G R L+TVLTKRMAEDLTEYL+E  +RVRYMHS++ TLERIEIIRDLRLG FDVL
Sbjct: 559 ATSQIGYRTLVTVLTKRMAEDLTEYLHENGVRVRYMHSDIDTLERIEIIRDLRLGAFDVL 618

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           VGINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAARNV+ +VILYAD IT S
Sbjct: 619 VGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADHITGS 678

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
           ++ A+DET RRR KQ  +N ++NI P S+K  I +++  +  +D  T +   D       
Sbjct: 679 MKRAMDETERRRAKQQAYNIENNITPASIKRGIADILGSVAEQDHVTVDTGFDIA----P 734

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
                A +  L K+M   A +L FEEAAR+RDEI+RL+ +   
Sbjct: 735 GHNLAATIADLEKRMKEVAADLAFEEAARLRDEIQRLQKAELL 777


>gi|220924991|ref|YP_002500293.1| excinuclease ABC subunit B [Methylobacterium nodulans ORS 2060]
 gi|219949598|gb|ACL59990.1| excinuclease ABC, B subunit [Methylobacterium nodulans ORS 2060]
          Length = 934

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 449/720 (62%), Positives = 559/720 (77%), Gaps = 2/720 (0%)

Query: 79  QSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDI 138
                  ++E +   ++ Q ++ +V AL +L+   NPL K+GK W PHR          +
Sbjct: 124 TPDDGPDLAEDKQTSLAAQGVSATVDALTKLLTEGNPLFKHGKPWVPHRPERPQKSEGGV 183

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++++D+ P+GDQP AIA L++G+   E+ Q+LLGVTGSGKTFTMAKVIE  QRPA++
Sbjct: 184 -PFRLKSDFTPAGDQPKAIADLVEGVRRSERDQVLLGVTGSGKTFTMAKVIEETQRPALI 242

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRM
Sbjct: 243 LAPNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRM 302

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+ATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M   + +G+ +EQ++L++ LV  QYK
Sbjct: 303 RHAATRALLERDDVIIVASVSCIYGIGSVETYTAMSFTVTLGERIEQRQLIADLVALQYK 362

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R      RGTFRV GD IE++P+HLED  WR+ +FG+++E I+EF PLTG+ +  ++ +K
Sbjct: 363 RVQSDFARGTFRVRGDVIELWPAHLEDRGWRIGLFGDEVEAITEFDPLTGKTVNPLKFVK 422

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IYANSHYVTPRPTL  A+K IK+ELK R+ EL + GRL+EAQRLEQR T+DLEM+E TGS
Sbjct: 423 IYANSHYVTPRPTLQQAVKGIKDELKWRVEELTRMGRLIEAQRLEQRCTFDLEMIEATGS 482

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHVTI QI GMYRGDF RKATLA
Sbjct: 483 CNGIENYSRYLTGRKPGEPPPTLFEYLPDNALVFTDESHVTISQIGGMYRGDFRRKATLA 542

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPSC+DNRPLRFEEW+ +RP ++ VSATP  WELEQ  G+ VEQ+IRPTGLVDP 
Sbjct: 543 EYGFRLPSCLDNRPLRFEEWDAMRPQSVHVSATPAKWELEQTGGVFVEQVIRPTGLVDPE 602

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V IR AR+QV+D+  E+   AQ G R L+T LTKRMAEDLTEYL+E  +RVRYMHS++ T
Sbjct: 603 VIIRPARSQVDDLLGEVKAVAQAGYRTLVTTLTKRMAEDLTEYLHENGVRVRYMHSDIDT 662

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LERIEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRA
Sbjct: 663 LERIEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRA 722

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN   +VILYAD  T S+  AI ET RRR KQL +N +H I PQSVK  I ++++ +  
Sbjct: 723 ARNAEGRVILYADQRTGSMDRAIAETERRRAKQLAYNAEHGITPQSVKRNIADILESVYE 782

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
            D    +  +    +++     KA +  L K+M  AA +L+FEEAAR+RDE+KRL+++  
Sbjct: 783 RDHVQVDTGLAKGAVTV-GHNLKAVMADLEKRMRAAAADLDFEEAARLRDELKRLQATEL 841


>gi|319406846|emb|CBI80481.1| excinuclease ABC, subunit B [Bartonella sp. 1-1C]
          Length = 764

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/712 (66%), Positives = 578/712 (81%), Gaps = 3/712 (0%)

Query: 85  SMSEKQTREISE-QTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQM 143
           +++ K ++ I++   +T +V+AL+ LI S NPL KNG +WTPHR          I  FQ+
Sbjct: 44  TINTKPSKNITKTNGITATVEALSALIASGNPLFKNGALWTPHRPIRPEKSEGGI-PFQI 102

Query: 144 QTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNK 203
           +T + P+GDQP AI  L++GI   E+ Q+LLGVTGSGKT+TMAK+IE  QRPA+++APNK
Sbjct: 103 KTSFQPAGDQPIAIKSLVEGIKRNERTQVLLGVTGSGKTYTMAKIIEKTQRPALILAPNK 162

Query: 204 ILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
            LAAQLY EFKNFFP+NAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+AT
Sbjct: 163 TLAAQLYGEFKNFFPNNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAAT 222

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
           R++LER+D I+++SVSCIYGIGSVE+Y+ M  Q++ GD ++Q++LL+ LV QQY+RQDI 
Sbjct: 223 RAVLERDDVIIIASVSCIYGIGSVETYTAMTFQMQKGDKLDQQKLLTDLVSQQYQRQDIN 282

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
            +RG+FRV GD+IEIFP+HLED AWR+S+FG++IE I+EF PLTGQK  ++++IKIYANS
Sbjct: 283 FVRGSFRVRGDTIEIFPAHLEDRAWRISLFGDEIETITEFDPLTGQKTADLQSIKIYANS 342

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
           HYVTPRPTLN A+K IK EL  RL EL   GRLLEAQRLEQR  +DLEMLETTGSC  IE
Sbjct: 343 HYVTPRPTLNQAIKSIKMELVKRLDELNAAGRLLEAQRLEQRTIFDLEMLETTGSCSGIE 402

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           NYSRYLTGR PGEPPPTLFEYIP  +L+F+DESHVTIPQI GMYRGDF RKATLAEYGFR
Sbjct: 403 NYSRYLTGRKPGEPPPTLFEYIPSHALVFIDESHVTIPQIGGMYRGDFRRKATLAEYGFR 462

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           LPSCMDNRPLRFEEW+ +RP TI VSATPG WE+EQ QGI VEQ+IRPTGL+DPP EIR 
Sbjct: 463 LPSCMDNRPLRFEEWDAMRPQTIAVSATPGRWEIEQSQGIFVEQVIRPTGLIDPPTEIRP 522

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
            +TQV+D  +EI+   ++G R L+TVLTKRMAEDLTEYL+E+NIRVRYMHS++ TLERIE
Sbjct: 523 VKTQVDDAINEIHQTIKKGYRTLITVLTKRMAEDLTEYLHEQNIRVRYMHSDINTLERIE 582

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           I+RDLRLG FDVL+GINLLREGLDIPECG VAI DADKEGFLRS+TSLIQ IGRAARNV 
Sbjct: 583 ILRDLRLGTFDVLIGINLLREGLDIPECGFVAIFDADKEGFLRSETSLIQMIGRAARNVE 642

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743
           S+VILYADTIT SI+ A+ ET RRR+KQ+ +NK++ I P S+K+ I +++     E+   
Sbjct: 643 SRVILYADTITGSIERALQETKRRRQKQIAYNKENQITPTSIKKNIDDILSSAY-ENNHN 701

Query: 744 TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             IS    Q +        H++ L K M  AA++LNFEEAA+ RDEIKRL+ 
Sbjct: 702 IKISHFITQNNKVGNNLTNHIQYLEKLMRKAANDLNFEEAAQFRDEIKRLQE 753


>gi|298292410|ref|YP_003694349.1| excinuclease ABC subunit B [Starkeya novella DSM 506]
 gi|296928921|gb|ADH89730.1| excinuclease ABC, B subunit [Starkeya novella DSM 506]
          Length = 853

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/741 (60%), Positives = 569/741 (76%), Gaps = 6/741 (0%)

Query: 59  NAAKRMLIHQRENTASKGEFQSQSSISMSEKQTREISE-QTMTPSVQALARLIQSDNPLL 117
            A++     +R   A   E    S++  +  +   ++     + +V AL+ LI+     +
Sbjct: 3   KASRPGGFGERSQRA--FEPAQVSTLDPALAEKLGVAPTSGASATVAALSALIEGGRAEV 60

Query: 118 KNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVT 177
            + ++WTPHR          +  F +++DY P+GDQP AI  L+      E+ Q+LLGVT
Sbjct: 61  -DRQVWTPHRPARPEKSEGGVK-FVLKSDYTPNGDQPKAIDDLVAAASEGERDQVLLGVT 118

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           GSGKTFTMA VI+ +QRPA+V+APNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAY
Sbjct: 119 GSGKTFTMANVIQRLQRPALVLAPNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAY 178

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
           VPRTDT+IEKESSINEQIDRMRHSATRSLLER+D I+V+SVSCIYGIGSVE+Y+ M  ++
Sbjct: 179 VPRTDTFIEKESSINEQIDRMRHSATRSLLERDDVIIVASVSCIYGIGSVETYASMTFKI 238

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           ++G+ ++Q+ LL+ LV  QYKR      RGTFRV GD IEIFP+H ED AWRVS+FG+++
Sbjct: 239 EVGERIDQRALLADLVALQYKRTQGDFGRGTFRVRGDVIEIFPAHYEDRAWRVSLFGDEV 298

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           E I EF PLTGQK ++++ +K+YANSHYVTPRPTL  A+  IK EL+ RL EL   GRLL
Sbjct: 299 ESIQEFDPLTGQKSQDLKFVKLYANSHYVTPRPTLIQAIAGIKNELRHRLDELNAMGRLL 358

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESH 477
           EAQRLEQR T+DLEM+E TGSC  IENYSR+LTGR PGEPPPTLFEY+P+++L+FVDESH
Sbjct: 359 EAQRLEQRCTFDLEMMEATGSCAGIENYSRWLTGRLPGEPPPTLFEYVPDNALIFVDESH 418

Query: 478 VTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537
           VT+PQI  MYRGDF RKATLAEYGFRLPSCMDNRPLRFEEW  +RP T+ VSATPG WE+
Sbjct: 419 VTVPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWEAMRPQTVHVSATPGKWEM 478

Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           E+  G+ VEQ+IRPTGLVDP VE+R ARTQV+D+  E+   A +G R L+T LTKRMAED
Sbjct: 479 ERTGGVFVEQVIRPTGLVDPEVEVRPARTQVDDLLGEVRQTAAKGYRTLVTTLTKRMAED 538

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTEYL+E  IRVRYMHS++ T+ERIEIIRDLRLG FDVL+GINLLREGLDIPECGLVAIL
Sbjct: 539 LTEYLHENGIRVRYMHSDIDTIERIEIIRDLRLGAFDVLIGINLLREGLDIPECGLVAIL 598

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           DADKEGFLRS+TSL+QTIGRAARNV+ +V+LYAD+IT S++ A+ ET RRR KQ+  N +
Sbjct: 599 DADKEGFLRSETSLVQTIGRAARNVDGRVVLYADSITGSMERAMAETERRRAKQIAWNTE 658

Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
           H I P+SV++ I ++++ +   D  T +  + A++ +       A +  L K+M  AA +
Sbjct: 659 HGITPESVRKAIGDILNSVYERDHVTVDAGL-AEEGATYGHNLAAVIADLEKRMRTAAAD 717

Query: 778 LNFEEAARIRDEIKRLKSSPY 798
           L+FE+AAR+RDEIKRL+++  
Sbjct: 718 LDFEQAARLRDEIKRLQATEL 738


>gi|148253310|ref|YP_001237895.1| excinuclease ABC subunit B [Bradyrhizobium sp. BTAi1]
 gi|146405483|gb|ABQ33989.1| Excinuclease ABC subunit B [Bradyrhizobium sp. BTAi1]
          Length = 1058

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/770 (59%), Positives = 571/770 (74%), Gaps = 10/770 (1%)

Query: 38  DKTMVADAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSSIS---MSEKQTREI 94
           D +   D  + +   A   +        I   +   ++      +      ++     ++
Sbjct: 121 DGSSTTDESQALTGLAEAPQATYGTAATIPTLDPELARQLGLPTAEDDEEALARPPRNKM 180

Query: 95  SEQTMTPSVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPS 150
               +  + +AL  LI+   P  +      K+WTPHR    +     +  F++++ Y P 
Sbjct: 181 EALGVKATAEALEALIREGRPEFRRDDGSLKLWTPHRPPRPDKSEGGVR-FEIKSAYEPK 239

Query: 151 GDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLY 210
           GDQP AIA+L++GI+  ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI++APNK LAAQLY
Sbjct: 240 GDQPQAIAELVEGINRNDRTQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLY 299

Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270
            EFK+FFP NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+
Sbjct: 300 GEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERD 359

Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
           D I+V+SVSCIYGIGSVE+Y+ M   LK G+ ++Q++L++ LV  QYKR      RGTFR
Sbjct: 360 DVIIVASVSCIYGIGSVETYTAMTFALKKGERIDQRQLIADLVALQYKRTQHDFTRGTFR 419

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V GD ++IFP+H ED AWRV++FG+ +E I EF PLTG K   +E IK+YANSHYVTPRP
Sbjct: 420 VRGDVVDIFPAHYEDRAWRVNLFGDTVENIEEFDPLTGHKQDELEFIKVYANSHYVTPRP 479

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
           TL  A+K IK ELK+RL +L  +GRLLEAQRLEQR T+D+EM+E TGSC  IENYSRYLT
Sbjct: 480 TLVQAIKSIKHELKIRLDQLHAQGRLLEAQRLEQRTTFDIEMMEATGSCAGIENYSRYLT 539

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
           GR PGEPPPTLFEY+P+++L+F DESHVTIPQI GM+RGDF RKATLAEYGFRLPSCMDN
Sbjct: 540 GRRPGEPPPTLFEYVPDNALVFADESHVTIPQIGGMFRGDFRRKATLAEYGFRLPSCMDN 599

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
           RPLRFEEW+ +RP T+ VSATPG WEL +  G+ VEQ+IRPTGL+DPPV+IR ARTQV+D
Sbjct: 600 RPLRFEEWDMMRPQTVAVSATPGGWELNEAGGVFVEQVIRPTGLIDPPVDIRPARTQVDD 659

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  E+   AQ+G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRL
Sbjct: 660 LLGEVRATAQKGYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRL 719

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G FD LVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYA
Sbjct: 720 GAFDALVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYA 779

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
           D +T S++ AI ET RRREKQ+E+N  H I P+SVK+ I ++++ +   D          
Sbjct: 780 DQMTGSMERAIAETNRRREKQVEYNTAHGITPESVKKSIGDILNSVYERDHVLVETGGGT 839

Query: 751 QQLSL--SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
               +       +  L  L  +M  AA +LNFEEAAR+RDE+KRL+++  
Sbjct: 840 TTDDVISIGHNFETVLADLETRMREAAADLNFEEAARLRDEVKRLRATEL 889


>gi|163867953|ref|YP_001609157.1| excinuclease ABC subunit B [Bartonella tribocorum CIP 105476]
 gi|161017604|emb|CAK01162.1| excinuclease ABC, subunit B [Bartonella tribocorum CIP 105476]
          Length = 711

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/700 (68%), Positives = 569/700 (81%), Gaps = 1/700 (0%)

Query: 96  EQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPA 155
           +  +T +V+AL+ LI S NPL KNG +WTPHR          I  FQ++T +  +GDQP 
Sbjct: 2   KNGVTATVEALSALIASGNPLFKNGALWTPHRPIPPEKSEGGI-PFQLETSFKAAGDQPQ 60

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           AI  L++GI   E+ Q+LLGVTGSGKT+TMAKVIE  QRPA+++APNK LAAQLY EFK+
Sbjct: 61  AIKTLVEGIEKDERTQVLLGVTGSGKTYTMAKVIEQTQRPALILAPNKTLAAQLYGEFKS 120

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
           FFPHNAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR++LER+D I+V
Sbjct: 121 FFPHNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATRAVLERDDVIIV 180

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +SVSCIYGIGSVE+Y+ M  Q++ GD + Q++LL+ LV QQY RQDI   RG+FRV GD+
Sbjct: 181 ASVSCIYGIGSVETYTAMTFQIEKGDKLNQRKLLADLVSQQYYRQDINFTRGSFRVRGDT 240

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           IEIFP HLED AWR+S+FG+++E I+EF PLTGQK  ++++IKIYANSHYV PRPTLN A
Sbjct: 241 IEIFPVHLEDRAWRISLFGDEVETITEFDPLTGQKTEDLQSIKIYANSHYVIPRPTLNQA 300

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           MK IK EL  RL EL   GRLLEAQRLEQR  +DLEMLETTGSC  IENYSRYLTGRNPG
Sbjct: 301 MKAIKMELAQRLDELNAAGRLLEAQRLEQRTIFDLEMLETTGSCPGIENYSRYLTGRNPG 360

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           EPPPTLFEYIP ++L+F+DESHVTIPQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRF
Sbjct: 361 EPPPTLFEYIPLNALVFIDESHVTIPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRF 420

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           EEW+ +RP TI VSATPG WE+EQ  GI  EQIIRPTGLVDP  EIR ARTQV+DV +EI
Sbjct: 421 EEWDAMRPQTIAVSATPGRWEIEQSHGIFAEQIIRPTGLVDPETEIRPARTQVDDVVNEI 480

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               Q+G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ TLERIEI+RDLRLG FDV
Sbjct: 481 RNTIQKGYRTLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTLERIEILRDLRLGTFDV 540

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+GINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYADTIT 
Sbjct: 541 LIGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADTITG 600

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
           SI+ A+ ET RRR+KQ+ +NK+H+I P S+K+ I ++++         T IS    Q ++
Sbjct: 601 SIERALQETQRRRQKQITYNKEHHITPTSIKKNIDDILNAGNENQKTLTRISNFITQNNM 660

Query: 756 SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                 +H++SL K M  AA +LNFEEAAR+RDEIK+L+ 
Sbjct: 661 DHNNLASHIQSLEKSMRKAAADLNFEEAARLRDEIKQLQK 700


>gi|46203067|ref|ZP_00052141.2| COG0556: Helicase subunit of the DNA excision repair complex
           [Magnetospirillum magnetotacticum MS-1]
          Length = 881

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/735 (60%), Positives = 568/735 (77%), Gaps = 6/735 (0%)

Query: 69  RENTASKGEFQSQ----SSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWT 124
               A            +     +     ++ + ++ +V+AL +L+   NPL KNG+ W 
Sbjct: 73  DPRLAQALGLTPPEDGPAPEGAGQDDAPSLATEGVSATVEALEKLLTEGNPLFKNGEAWV 132

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFT 184
           PHR          +  F +++D+ P+GDQP AIA L++G+ + E+ Q+LLGVTGSGKTFT
Sbjct: 133 PHRPERPAKSEGGVK-FTLKSDFTPAGDQPTAIAALVEGVKTAERDQVLLGVTGSGKTFT 191

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           MAKVIE  QRPA+++APNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DT+
Sbjct: 192 MAKVIEETQRPALILAPNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTF 251

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304
           IEKESSINEQIDRMRH+ATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M   + +G+ +E
Sbjct: 252 IEKESSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYTAMSFTVSLGERIE 311

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           Q++L++ LV  QYKR      RGTFRV GD IE++P+HLED  WR+ +FG+++E I EF 
Sbjct: 312 QRQLIADLVALQYKRIQSDFARGTFRVRGDVIELWPAHLEDRGWRIGLFGDEVESIVEFD 371

Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
           PLTG+KI  ++ +K+YANSHYVTPRPTL  A+K IK ELK+R+ EL + GRL+EAQRLEQ
Sbjct: 372 PLTGKKINELKFVKVYANSHYVTPRPTLQQAIKGIKTELKLRVDELTRMGRLIEAQRLEQ 431

Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484
           R T+D+EM+E TG+C  IENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHVT+PQI 
Sbjct: 432 RCTFDIEMIEATGACNGIENYSRYLTGRKPGEPPPTLFEYLPDNALVFTDESHVTVPQIG 491

Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544
           GMYRGDF RKATLAEYGFRLPSC+DNRPLRFEEW+ +RP ++ VSATPG WE+E+  G+ 
Sbjct: 492 GMYRGDFRRKATLAEYGFRLPSCLDNRPLRFEEWDAMRPQSVHVSATPGKWEMERTAGVF 551

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
            EQ+IRPTGLVDP +EIR AR+QV+D+  E+   AQ G R L+T LTKRMAEDLTEYL+E
Sbjct: 552 AEQVIRPTGLVDPVIEIRPARSQVDDLLGEVRAVAQAGYRTLVTTLTKRMAEDLTEYLHE 611

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            ++RVRYMHS++ TLERIEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGF
Sbjct: 612 NSVRVRYMHSDIDTLERIEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGF 671

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
           LRS+TSLIQTIGRAARN  ++ ILYADTIT S++ A+ ET RRR+KQL +N++H I PQS
Sbjct: 672 LRSETSLIQTIGRAARNAEARCILYADTITGSMERAMAETERRRQKQLAYNEEHGITPQS 731

Query: 725 VKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           VK  I ++++ +   D    +  +    +++     KA +  L K+M  AA +L+FEEAA
Sbjct: 732 VKRGISDILESVYERDHVRVDTGLAKDAITV-GHNLKAVMADLEKRMRAAAADLDFEEAA 790

Query: 785 RIRDEIKRLKSSPYF 799
           R+RDE+KRL+++   
Sbjct: 791 RLRDELKRLQATELM 805


>gi|49474492|ref|YP_032534.1| excinuclease ABC subunit B [Bartonella quintana str. Toulouse]
 gi|49239996|emb|CAF26410.1| Excinuclease ABC subunit b [Bartonella quintana str. Toulouse]
          Length = 774

 Score =  912 bits (2357), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/700 (67%), Positives = 569/700 (81%), Gaps = 1/700 (0%)

Query: 96  EQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPA 155
           +  +T +V+AL+ LI SDNP  KNG +WTPHR          I   Q++T +  +GDQP 
Sbjct: 2   KNGVTATVEALSALIASDNPFFKNGALWTPHRPVRPKKSEGGIPL-QLETSFEAAGDQPQ 60

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           AI  L++GI   E+ Q+LLGVTGSGKT+TMAK+IE  QRPA+++APNK LAAQLY EFK+
Sbjct: 61  AIKTLVEGIEKDERTQVLLGVTGSGKTYTMAKIIEKTQRPALILAPNKTLAAQLYGEFKS 120

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
           FFPHNAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRMRH+ATR++LER+D I+V
Sbjct: 121 FFPHNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRMRHAATRAVLERDDVIIV 180

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +SVSCIYGIGSVE+Y+ M  Q+K GD + Q++LL+ LV Q Y RQDI  IRG+FRV GD+
Sbjct: 181 ASVSCIYGIGSVETYTAMTFQIKKGDRLNQRQLLADLVAQHYHRQDINFIRGSFRVRGDT 240

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           IEIFP+HLED AWR+S+FG+++E I+EF PLTGQK  +++ IKIYANSHYVTPRPTLN A
Sbjct: 241 IEIFPAHLEDRAWRISLFGDEVETITEFDPLTGQKTSDLQFIKIYANSHYVTPRPTLNQA 300

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K IK EL  RL EL   GRLLEAQRLEQR  +DLEMLE TGSC  IENYSRYLTGR PG
Sbjct: 301 IKSIKMELVQRLDELNAAGRLLEAQRLEQRTIFDLEMLEATGSCPGIENYSRYLTGRKPG 360

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           EPPPTLFEYIP ++L+F+DESHVTIPQI GMYRGDF RKATLAEYGFRLPSCMDNRPLRF
Sbjct: 361 EPPPTLFEYIPNNALVFIDESHVTIPQICGMYRGDFRRKATLAEYGFRLPSCMDNRPLRF 420

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           +EW+ +RP TI VSATPG WE+EQ  GI VEQIIRPTGL+DPP E+R A TQV+DV +EI
Sbjct: 421 KEWDLMRPQTIAVSATPGRWEIEQSHGIFVEQIIRPTGLIDPPTEVRPASTQVDDVVNEI 480

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               Q+G R L+TVLTKRMAEDLTEYL+E+ IRV YMHS++ TLERIEI+R+LRLG FDV
Sbjct: 481 RNTIQKGYRTLVTVLTKRMAEDLTEYLHEQGIRVHYMHSDIDTLERIEILRNLRLGAFDV 540

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+GINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYADTIT 
Sbjct: 541 LIGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADTITG 600

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
           SI+ A+ ET RRR+KQ+ +N++H+I P S+K+ I ++++     D   TNIS    Q S 
Sbjct: 601 SIERALQETQRRRQKQIAYNEEHHITPTSIKKNISDILNSGSKNDHPHTNISDFVTQNSR 660

Query: 756 SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +      H++ L+K MH AA +LNFEEAAR+RDEIK+L+ 
Sbjct: 661 AGNNLAKHIQYLKKSMHEAAADLNFEEAARLRDEIKQLQK 700


>gi|316935859|ref|YP_004110841.1| excinuclease ABC subunit B [Rhodopseudomonas palustris DX-1]
 gi|315603573|gb|ADU46108.1| excinuclease ABC, B subunit [Rhodopseudomonas palustris DX-1]
          Length = 1020

 Score =  912 bits (2357), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/753 (61%), Positives = 564/753 (74%), Gaps = 21/753 (2%)

Query: 61  AKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG 120
           A+++ +   E+ A       +S +              +  +  AL  LI+   P  K  
Sbjct: 126 ARQLGLPTEEDDADALARPPRSKMEA----------LGVKATADALESLIRDGRPEFKGE 175

Query: 121 ----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGV 176
               K+W PHR          +  F +++DY P GDQP AI +L++GI   ++ Q+LLGV
Sbjct: 176 DGGVKLWVPHRPPRPEKSEGGVR-FVLKSDYQPRGDQPQAIKELVEGIDRNDRTQVLLGV 234

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           TGSGKT+TMAKVIEA QRPAI++APNK LAAQLY EFKNFFP NAVEYFVSYYDYYQPEA
Sbjct: 235 TGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEA 294

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           YVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M   
Sbjct: 295 YVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYTAMTFA 354

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK G+ ++Q++L++ LV  QYKR      RGTFRV GD I+IFP+H ED AWRV MFG++
Sbjct: 355 LKRGERIDQRQLIADLVALQYKRTQADFTRGTFRVRGDVIDIFPAHYEDRAWRVKMFGDE 414

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           IE I EF PLTG K   +E +KIYANSHYVTPRPTL  A+  IK ELK RL +L  +GRL
Sbjct: 415 IEGIEEFDPLTGHKQDELEFVKIYANSHYVTPRPTLIQAISSIKTELKWRLDQLHAQGRL 474

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           LEAQRLEQR T+D+EM+E TGSC  IENYSRYLTGR PGEPPPTLFEY+P+++L+F DES
Sbjct: 475 LEAQRLEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEPPPTLFEYVPDNALVFADES 534

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536
           HV++PQI  M++GDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP T+ VSATP +WE
Sbjct: 535 HVSVPQIGAMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDMMRPQTVAVSATPAAWE 594

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           L +  G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+  E+   A +G R L+TVLTKRMAE
Sbjct: 595 LNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRATAARGYRTLITVLTKRMAE 654

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DLTE+L+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LVGINLLREGLDIPEC LVAI
Sbjct: 655 DLTEFLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALVGINLLREGLDIPECALVAI 714

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
           LDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD IT S+Q +IDET RRREKQ+E+N 
Sbjct: 715 LDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQITGSMQRSIDETNRRREKQIEYNT 774

Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNISIDA-----QQLSLSKKKGKAHLKSLRKQM 771
            H I P+SVK+ I ++++ +   D     I            ++     +A L  L  +M
Sbjct: 775 AHGITPESVKKSIGDILNSVYERDHVLVEIGDGKGAGFTDDAAVIGHNFEAVLADLESRM 834

Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
             AA +LNFEEAAR+RDE+KRL+++     +DD
Sbjct: 835 REAAADLNFEEAARLRDEVKRLRATE-LAVIDD 866


>gi|319898509|ref|YP_004158602.1| excinuclease ABC, subunit B [Bartonella clarridgeiae 73]
 gi|319402473|emb|CBI76016.1| excinuclease ABC, subunit B [Bartonella clarridgeiae 73]
          Length = 810

 Score =  912 bits (2356), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/717 (65%), Positives = 570/717 (79%), Gaps = 8/717 (1%)

Query: 85  SMSEKQTREISE------QTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDI 138
            +S + T  I          +T +V+AL+ LI S NPL KNG +WTPHR          I
Sbjct: 42  DVSFETTNTIPPKNITTTNGVTATVEALSALIASGNPLFKNGALWTPHRPIRPEKSEGGI 101

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             FQ++T + P+GDQP AI  L++GI   E+ Q+LLGVTGSGKT+TMAK+IE  QRPA++
Sbjct: 102 -PFQIKTSFQPAGDQPNAIKSLVEGIEKNERTQVLLGVTGSGKTYTMAKIIEKTQRPALI 160

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY EFKNFFP+NAVEYFVSYYDYYQPEAYV R+DTYIEKESSINEQIDRM
Sbjct: 161 LAPNKTLAAQLYGEFKNFFPNNAVEYFVSYYDYYQPEAYVARSDTYIEKESSINEQIDRM 220

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+ATR++LER+D I+++SVSCIYGIGSVE+Y+ M +Q++ GD + +++LL+ LV QQY+
Sbjct: 221 RHAATRAVLERDDVIIIASVSCIYGIGSVETYTAMTLQMQKGDKLNKQKLLTDLVAQQYQ 280

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           RQ+I  +RG+FRV GD+IEIFP+HLE+ AWR+S+F ++IE ++EF PLTGQK  ++++IK
Sbjct: 281 RQNINFVRGSFRVRGDTIEIFPAHLENRAWRISLFDDEIETLTEFDPLTGQKTGDLQSIK 340

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IYANSHYVTPRPTLN A+K IK EL  RL EL   GRLLEAQRLEQR  +DLEMLETTGS
Sbjct: 341 IYANSHYVTPRPTLNQAIKSIKMELVQRLDELNAAGRLLEAQRLEQRTIFDLEMLETTGS 400

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYLTGR PGEPPPT+FEYIP  +L+F+DESHVTIPQI GMYRGDF RKATL 
Sbjct: 401 CPGIENYSRYLTGRKPGEPPPTMFEYIPNHALVFIDESHVTIPQIGGMYRGDFRRKATLV 460

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPSCMDNRPL FEEW+ +R  TI VSATPG WE+EQ + I VEQIIRPTGL+DPP
Sbjct: 461 EYGFRLPSCMDNRPLSFEEWDAMRSQTIAVSATPGRWEIEQSRNIFVEQIIRPTGLIDPP 520

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
            EIR A+TQV+DV +EI    ++G R L+TVLTK MAEDLTEYL+E+NIRVRYMHS++ T
Sbjct: 521 TEIRPAKTQVDDVVNEIRQTIKKGYRTLITVLTKHMAEDLTEYLHEQNIRVRYMHSDINT 580

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LERIEI+RDLRLG FDVLVGINLLREGLDIPECG VAI DADKEGFLRS+TSLIQTIGRA
Sbjct: 581 LERIEILRDLRLGTFDVLVGINLLREGLDIPECGFVAIFDADKEGFLRSETSLIQTIGRA 640

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV+S+VILYAD IT SI+ A+ ET RRR+KQ+ +N++H I P S+K+ I + +  +  
Sbjct: 641 ARNVDSRVILYADIITGSIERALQETKRRRQKQIAYNEEHQITPTSIKKNIDDTLSSVYE 700

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            D    NIS    Q +        H++ L K M  AAD+LNFEEAAR+RDEIK L+ 
Sbjct: 701 NDY-NINISHFITQNNRVGDNLSNHIQHLEKLMRKAADDLNFEEAARLRDEIKLLQE 756


>gi|209886295|ref|YP_002290152.1| excinuclease ABC subunit B [Oligotropha carboxidovorans OM5]
 gi|209874491|gb|ACI94287.1| excinuclease ABC subunit B [Oligotropha carboxidovorans OM5]
          Length = 981

 Score =  911 bits (2354), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/775 (59%), Positives = 570/775 (73%), Gaps = 11/775 (1%)

Query: 33  KQLEVDKTMVADAMRRIRSEA--GKHRKNAAKRMLIHQRENTASKGEFQSQSSISMSEKQ 90
           K  + D    A      +S+   G   +   + +            E   Q    + +  
Sbjct: 79  KTFDADAHHPAPPQPYSQSQGTQGGMEEKP-QAIYGTSATIPTLDPELAKQLGYDVEDDD 137

Query: 91  T-----REISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQT 145
                  ++    +  + +AL  LI+   P  +  KIWTPHR          +   ++++
Sbjct: 138 AFRPARNKMEALGVKATAEALEALIRDGRPEFRGDKIWTPHRPPRPEKSEGGVRL-ELKS 196

Query: 146 DYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKIL 205
           +Y P GDQP AI +L++GI+ +++ Q+LLGVTGSGKT+TMA+VI A QRPA+++APNK L
Sbjct: 197 EYEPKGDQPQAIKELVEGINRQDRTQVLLGVTGSGKTYTMAQVIAATQRPALILAPNKTL 256

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           AAQLY EFKNFFP NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRHSATR+
Sbjct: 257 AAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRA 316

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           LLER+D I+V+SVSCIYGIGSVE+Y+ M   +K G+ ++Q+++++ LV  QYKR      
Sbjct: 317 LLERDDVIIVASVSCIYGIGSVETYTAMTFAMKKGERIDQRQIIADLVALQYKRTSADFT 376

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           RGTFRV GD+I+IFP+H ED AWRV++FG+ IE I EF PLTG K   +E +KIYANSHY
Sbjct: 377 RGTFRVRGDTIDIFPAHYEDRAWRVNLFGDTIESIEEFDPLTGHKSDELEFVKIYANSHY 436

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
           VTPRPTL  A+K IK ELK RL +L  +GRLLEAQRLEQR T+DLEM+E TGSC  IENY
Sbjct: 437 VTPRPTLIQAIKNIKTELKWRLDQLHAQGRLLEAQRLEQRTTFDLEMMEATGSCAGIENY 496

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505
           SRYLTGR PGEPPPTLFEY+P+++L+F DESHVTIPQI GM+RGDF RKATLAEYGFRLP
Sbjct: 497 SRYLTGRKPGEPPPTLFEYVPDNALVFTDESHVTIPQIGGMFRGDFRRKATLAEYGFRLP 556

Query: 506 SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565
           SCMDNRPLRFEEW+ +RP ++ VSATP +WELEQ  G+ VEQ+IRPTGL+DPPV IR AR
Sbjct: 557 SCMDNRPLRFEEWDMMRPQSVAVSATPAAWELEQSGGVFVEQVIRPTGLIDPPVHIRPAR 616

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           TQV+D+  E+   A+ G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEII
Sbjct: 617 TQVDDLVGEVRETARNGYRSLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEII 676

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RDLRLG FD LVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ K
Sbjct: 677 RDLRLGAFDALVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGK 736

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN 745
           VILYAD IT S++ AI ET RRREKQ+ +N+ H I P+SVK+ I ++++ +   D     
Sbjct: 737 VILYADQITGSMERAIAETDRRREKQVAYNEAHGITPESVKKSIGDILNSVYERDHVLVE 796

Query: 746 ISID--AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           +     A          +  L  L  +M  AA +LNFEEAAR+RDE+KRL+++  
Sbjct: 797 VGDGGMADDTVAIGHNFETVLADLETRMREAAADLNFEEAARLRDEVKRLRATEL 851


>gi|170742630|ref|YP_001771285.1| excinuclease ABC subunit B [Methylobacterium sp. 4-46]
 gi|168196904|gb|ACA18851.1| excinuclease ABC, B subunit [Methylobacterium sp. 4-46]
          Length = 917

 Score =  911 bits (2353), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/720 (62%), Positives = 557/720 (77%), Gaps = 2/720 (0%)

Query: 79  QSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDI 138
                  ++E+    ++   ++ +V AL +L+   NPL K+GK W PHR          +
Sbjct: 93  TPDDGPDLAEEPGASLAAAGVSATVDALTKLLTEGNPLFKDGKPWVPHRPERPQKSEGGV 152

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++++D+ P+GDQP AIA L++G+   E+ Q+LLGVTGSGKTFTMAKVIE  QRPA++
Sbjct: 153 A-FRLKSDFSPAGDQPKAIADLVEGVRRSERDQVLLGVTGSGKTFTMAKVIEETQRPALI 211

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRM
Sbjct: 212 LAPNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRM 271

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M   + +G+ +EQ++L++ LV  QYK
Sbjct: 272 RHSATRALLERDDVIIVASVSCIYGIGSVETYTAMSFTVTLGERIEQRQLIADLVALQYK 331

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R      RGTFRV GD IE++P+HLED  WR+ +FG+++E I+EF PLTG+ I  ++ +K
Sbjct: 332 RIQSDFARGTFRVRGDVIELWPAHLEDRGWRIGLFGDEVEAITEFDPLTGKTINPLKFVK 391

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IYANSHYVTPRPTL  A+K IK+ELK R+ EL + GRL+EAQRLEQR T+DLEM+E TG+
Sbjct: 392 IYANSHYVTPRPTLQQAVKGIKDELKRRVEELTRMGRLIEAQRLEQRCTFDLEMIEATGA 451

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHVTI QI GMYRGDF RKATLA
Sbjct: 452 CNGIENYSRYLTGRKPGEPPPTLFEYLPDNALVFTDESHVTISQIGGMYRGDFRRKATLA 511

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPSC+DNRPLRFEEW+ +RP +I VSATP  WE+EQ  G+ VEQ+IRPTGLVDP 
Sbjct: 512 EYGFRLPSCLDNRPLRFEEWDAMRPQSIHVSATPAKWEMEQTGGVFVEQVIRPTGLVDPE 571

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V IR AR+QV+D+  E+   A  G R L+T LTKRMAEDLTEYL+E  +RVRYMHS++ T
Sbjct: 572 VIIRPARSQVDDLLGEVKEVAAAGYRTLVTTLTKRMAEDLTEYLHENGVRVRYMHSDIDT 631

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LERIEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRA
Sbjct: 632 LERIEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRA 691

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN   +VILYAD  T S+  AI ET RRR KQL +N +H I PQSVK  I ++++ +  
Sbjct: 692 ARNAEGRVILYADQRTGSMDRAIAETERRRAKQLAYNAEHGITPQSVKRNIADILESVFE 751

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
            D    +  +    +++     KA +  L K+M  AA +L+FEEAAR+RDE+KRL+++  
Sbjct: 752 RDHVQVDTGLAKGGVTV-GHNLKAVMADLEKRMRAAAADLDFEEAARLRDELKRLQATEL 810


>gi|75676679|ref|YP_319100.1| excinuclease ABC subunit B [Nitrobacter winogradskyi Nb-255]
 gi|74421549|gb|ABA05748.1| Excinuclease ABC subunit B [Nitrobacter winogradskyi Nb-255]
          Length = 1032

 Score =  910 bits (2352), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/751 (60%), Positives = 567/751 (75%), Gaps = 14/751 (1%)

Query: 61  AKRMLIHQRENTASKGEFQSQSSIS---MSEKQTREISEQTMTPSVQALARLIQSDNPLL 117
                I   +   ++      +      ++     ++    +  + ++L  L++   P  
Sbjct: 148 GTSATIPTLDPELARQLGMPTAEDDEDALARPPRSKMEGLGVKATAESLEALLRDGRPEF 207

Query: 118 KNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLL 173
           K G    K+WTPHR          +  F+++++Y P GDQP AI +L++GI   ++ Q+L
Sbjct: 208 KTGDGSLKLWTPHRPPRPEKSEGGVR-FEIKSEYQPKGDQPQAIRELVEGIRRNDRTQVL 266

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           LGVTGSGKT+TMAKVIEA QRPA+++APNK LAAQLY EFK+FFP NAVEYFVSYYDYYQ
Sbjct: 267 LGVTGSGKTYTMAKVIEATQRPALILAPNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQ 326

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
           PEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M
Sbjct: 327 PEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYTAM 386

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
              LK G+ ++Q++L++ LV  QYKR      RGTFRV GD+I+IFP+H ED AWRV++F
Sbjct: 387 TFALKRGERIDQRQLIADLVALQYKRTSADFTRGTFRVRGDTIDIFPAHYEDRAWRVNLF 446

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
           G+++E I EF PLTG K   ++ IK+Y+NSHYVTPRPTL  A+K IK ELK RL EL  +
Sbjct: 447 GDEVESIEEFDPLTGHKQDELDFIKVYSNSHYVTPRPTLVQAIKNIKVELKQRLDELHAQ 506

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
           GRLLEAQRLEQR T+DLEM+E TGSC  IENYSRYLTGR PGEPPPTLFEY+P+++L+F 
Sbjct: 507 GRLLEAQRLEQRTTFDLEMMEATGSCAGIENYSRYLTGRRPGEPPPTLFEYVPDNALVFA 566

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
           DESHV++PQI GM+RGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATPG
Sbjct: 567 DESHVSVPQIGGMFRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDMMRPQTIAVSATPG 626

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
           +WEL +  G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+  E+   A +G R L+TVLTKR
Sbjct: 627 AWELNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRATAAKGYRSLVTVLTKR 686

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LVGINLLREGLDIPEC L
Sbjct: 687 MAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALVGINLLREGLDIPECAL 746

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           VAILDADKEGFLRS+TSLIQTIGRAARNV  +VILYAD +T S+Q +I ET RRREKQ+E
Sbjct: 747 VAILDADKEGFLRSETSLIQTIGRAARNVEGRVILYADQVTGSMQRSIAETDRRREKQVE 806

Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG------KAHLKSL 767
           +N  H I P+S+K+ I ++++ +   D     I    +  S S          +A L  L
Sbjct: 807 YNTAHGITPESIKKSIGDILNSVYERDHVLVEIGDGGKGNSWSDDAIAIGHNFEAVLSDL 866

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
             +M  AA +LNFEEAAR+RDE+KRL+++  
Sbjct: 867 ETRMREAAADLNFEEAARLRDEVKRLRATEL 897


>gi|163853453|ref|YP_001641496.1| excinuclease ABC subunit B [Methylobacterium extorquens PA1]
 gi|163665058|gb|ABY32425.1| excinuclease ABC, B subunit [Methylobacterium extorquens PA1]
          Length = 908

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 443/718 (61%), Positives = 570/718 (79%), Gaps = 2/718 (0%)

Query: 82  SSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFF 141
           +  + ++ +T  ++ + ++ +V+AL RL+   NPL KNG+ W PHR          +  F
Sbjct: 116 APETAADAETPSLATEGVSATVEALERLLVEGNPLFKNGEAWVPHRPERPAKSEGGVK-F 174

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
            +++++ P+GDQP AIA L++G+ + E+ Q+LLGVTGSGKTFTMAKVIE  QRPA+++AP
Sbjct: 175 TLKSEFTPAGDQPTAIAALVEGVRTAERDQVLLGVTGSGKTFTMAKVIEETQRPALILAP 234

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRHS
Sbjct: 235 NKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHS 294

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           ATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M   + +G+ +EQ++L++ LV  QYKR  
Sbjct: 295 ATRALLERDDVIIVASVSCIYGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQ 354

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               RGTFRV GD IE++P+HLED  WR+ +FG++IE I EF PLTG+K+  ++ +K+YA
Sbjct: 355 SDFARGTFRVRGDVIELWPAHLEDRGWRIGLFGDEIESIVEFDPLTGKKLNELKFVKVYA 414

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
           NSHYVTPRPTL  A+K IK ELK+R+ EL + GRL+EAQRLEQR T+D+EM+E TG+C  
Sbjct: 415 NSHYVTPRPTLQQAIKGIKTELKLRVEELTRMGRLIEAQRLEQRCTFDIEMIEATGACNG 474

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHVT+PQI GMY+GDF RKATLAEYG
Sbjct: 475 IENYSRYLTGRKPGEPPPTLFEYLPDNALVFTDESHVTVPQIGGMYKGDFRRKATLAEYG 534

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPSC+DNRPLRFEEW+ +RP ++ VSATP  WE+E+  G+  EQ+IRPTGLVDP +EI
Sbjct: 535 FRLPSCLDNRPLRFEEWDAMRPQSVHVSATPAKWEMERTAGVFAEQVIRPTGLVDPVIEI 594

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R AR+QV+D+  E+   AQ G R L+T LTKRMAEDLTEYL+E ++RVRYMHS++ TLER
Sbjct: 595 RPARSQVDDLLGEVREVAQAGYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLER 654

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           IEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN
Sbjct: 655 IEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARN 714

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
            +++ ILYAD IT S++ A+ ET RRR+KQL +N++H I PQSVK  I ++++ +   D 
Sbjct: 715 ADARCILYADNITGSMERAMAETERRRQKQLAYNEEHGITPQSVKRGISDILESVYERDH 774

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
              +  +    +++     KA +  L K+M  AA +L+FEEAAR+RDE+KRL+++   
Sbjct: 775 VRVDTGLAKDAITV-GHNLKAVMADLEKRMRAAAADLDFEEAARLRDELKRLQATELM 831


>gi|188583725|ref|YP_001927170.1| excinuclease ABC subunit B [Methylobacterium populi BJ001]
 gi|179347223|gb|ACB82635.1| excinuclease ABC, B subunit [Methylobacterium populi BJ001]
          Length = 922

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 444/707 (62%), Positives = 563/707 (79%), Gaps = 2/707 (0%)

Query: 93  EISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGD 152
            ++ + ++ +V+AL +L+   NPL KNG+ W PHR          +  F +++D+ P+GD
Sbjct: 141 SLATEGVSATVEALEKLLTEGNPLFKNGEAWVPHRPERPAKSEGGVK-FTLKSDFTPAGD 199

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           QP AIA L++G+ S E+ Q+LLGVTGSGKTFTMAKVIE  QRPA+++APNK LAAQLY E
Sbjct: 200 QPTAIAALVEGVKSAERDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKTLAAQLYGE 259

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
           FK+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRHSATR+LLER+D 
Sbjct: 260 FKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATRALLERDDV 319

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           I+V+SVSCIYGIGSVE+Y+ M   + +G+ +EQ++L++ LV  QYKR      RGTFRV 
Sbjct: 320 IIVASVSCIYGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQSDFARGTFRVR 379

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD IE++P+HLED  WR+ +FG+++E I EF PLTG+K+  ++ +K+YANSHYVTPRPTL
Sbjct: 380 GDVIELWPAHLEDRGWRIGLFGDEVESIVEFDPLTGKKLNELKFVKVYANSHYVTPRPTL 439

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
             A+K IK ELK R+ EL + GRL+EAQRLEQR T+D+EM+E TG+C  IENYSRYLTGR
Sbjct: 440 QQAIKGIKTELKQRVEELTRMGRLIEAQRLEQRCTFDIEMIEATGACNGIENYSRYLTGR 499

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
            PGEPPPTLFEY+P+++L+F DESHVT+PQI GMYRGDF RKATLAEYGFRLPSC+DNRP
Sbjct: 500 KPGEPPPTLFEYLPDNALVFTDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCLDNRP 559

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           LRFEEW+ +RP ++ VSATP  WE+E+  G+  EQ+IRPTGLVDP +EIR AR+QV+D+ 
Sbjct: 560 LRFEEWDAMRPQSVHVSATPAKWEMERTAGVFAEQVIRPTGLVDPVIEIRPARSQVDDLL 619

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            E+   AQ G R L+T LTKRMAEDLTEYL+E ++RVRYMHS++ TLERIEIIRDLRLG 
Sbjct: 620 GEVRAVAQAGYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLERIEIIRDLRLGA 679

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN +++ ILYADT
Sbjct: 680 FDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNADARCILYADT 739

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
           IT S++ A+ ET RRR+KQL +N +H I PQSVK  I ++++ +   D    +  +    
Sbjct: 740 ITGSMERAMAETERRRQKQLAYNAEHGITPQSVKRGIADILESVYERDHVRVDTGLAKDA 799

Query: 753 LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
           +++     KA +  L K+M  AA +L+FEEAAR+RDE+KRL+++   
Sbjct: 800 ITV-GHNLKAVMADLEKRMRAAAADLDFEEAARLRDELKRLQATELM 845


>gi|217979770|ref|YP_002363917.1| excinuclease ABC, B subunit [Methylocella silvestris BL2]
 gi|217505146|gb|ACK52555.1| excinuclease ABC, B subunit [Methylocella silvestris BL2]
          Length = 879

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 462/774 (59%), Positives = 567/774 (73%), Gaps = 30/774 (3%)

Query: 50  RSEAGKHR-----------KNAAKRMLIHQRENTASKGEFQSQSSISMSEKQTREISE-- 96
           RS+A K              N A            +  E    S I     ++   S   
Sbjct: 23  RSKASKPEVKPLGEHLAALLNPALNQKQPGFAEAPAAYEASPVSRIDAQLAESLGRSPDR 82

Query: 97  ---------------QTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFF 141
                               +V++L  L++  +P L+    WTPHR    +     +  F
Sbjct: 83  GANGSSAPLYQPPGLSGAVATVESLKDLLERGDPNLREKTPWTPHRPDRPDKSEGGVK-F 141

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ ++Y P GDQPAAI +L+KGI + E+ Q+LLGVTGSGKTFTMA+VI+   RPA+V+AP
Sbjct: 142 KLVSEYEPKGDQPAAIEELVKGIAAHERDQVLLGVTGSGKTFTMAQVIQRTNRPALVLAP 201

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRH+
Sbjct: 202 NKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHA 261

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           ATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M   +K G+ ++Q++L++ LV  QYKR  
Sbjct: 262 ATRALLERDDVIIVASVSCIYGIGSVETYTAMTFTVKAGERIDQRQLIADLVALQYKRSA 321

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               RG FRV GD+I++FP+H ED AWR++ FG+ IE ISEF PLTG+K +++E +KIYA
Sbjct: 322 GDFSRGVFRVRGDTIDLFPAHYEDRAWRINFFGDSIETISEFDPLTGKKTQDLEFVKIYA 381

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
           NSHYVTPRPTL  ++K IK ELK RL EL   GRLLEAQRLEQR  +DLEMLE TGSC  
Sbjct: 382 NSHYVTPRPTLLQSIKGIKIELKQRLAELYAGGRLLEAQRLEQRCMFDLEMLEATGSCAG 441

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHVT+PQI  MYRGDF RKATLAEYG
Sbjct: 442 IENYSRYLTGRRPGEPPPTLFEYLPDNALVFTDESHVTVPQIGAMYRGDFRRKATLAEYG 501

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPSC+DNRPLRFEEW  +RP TI VSATPGSWE+E+  G+ VEQIIRPTGL+DPPVEI
Sbjct: 502 FRLPSCLDNRPLRFEEWEAMRPQTIHVSATPGSWEMERTGGVFVEQIIRPTGLIDPPVEI 561

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R AR+QV+D+  E+   A +G R L+TVLTKRMAEDLTEYL+E  +RVRYMHS++ T+ER
Sbjct: 562 RPARSQVDDLLGEVREVALRGYRSLITVLTKRMAEDLTEYLHEHGVRVRYMHSDIDTIER 621

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           IEIIRDLRLG FD LVGINLLREGLDIPEC LVAILDADKEGFLRS+TSL+QTIGRAARN
Sbjct: 622 IEIIRDLRLGAFDALVGINLLREGLDIPECSLVAILDADKEGFLRSETSLVQTIGRAARN 681

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           ++ KVILYAD  T S+Q AI ET+RRR+KQ  +N +H I P S+K  I +++  +   D 
Sbjct: 682 IDGKVILYADRETGSMQRAIAETSRRRDKQTAYNLEHGITPASIKRGIQDILGSVYERDH 741

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            T +  +   Q SL     KA +  L K+M  AA +L+FEEAAR+RDE+KRL++
Sbjct: 742 VTVDAGLVGAQ-SLVGHNFKATVTDLEKRMRAAAADLDFEEAARLRDELKRLQA 794


>gi|170747239|ref|YP_001753499.1| excinuclease ABC subunit B [Methylobacterium radiotolerans JCM
           2831]
 gi|170653761|gb|ACB22816.1| excinuclease ABC, B subunit [Methylobacterium radiotolerans JCM
           2831]
          Length = 923

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/763 (59%), Positives = 570/763 (74%), Gaps = 2/763 (0%)

Query: 37  VDKTMVADAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSSISMSEKQTREISE 96
              T  A+  R   +EA +          +  R   A                      +
Sbjct: 78  AAATRRAEIARDGFAEAPQAGYALGDAADVDPRLAQALGLTPPEDGPAPEGADLPDPGGD 137

Query: 97  QTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAA 156
              + +V AL RL+   NPL K+GK WTPHR          +  F +++D+ P+GDQP A
Sbjct: 138 GGASATVTALERLLTEGNPLFKDGKTWTPHRPERPQKSEGGVR-FTLKSDFTPAGDQPRA 196

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           IA+L+ G+ + E+ Q+LLGVTGSGKTFTMAK+IE  QRPA+++APNK LAAQLY EFK F
Sbjct: 197 IAELVGGVQALERDQVLLGVTGSGKTFTMAKIIEETQRPALILAPNKTLAAQLYGEFKAF 256

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           FP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRH+ATR+LLER+D I+V+
Sbjct: 257 FPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHAATRALLERDDVIIVA 316

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           SVSCIYGIGSVE+Y+ M   + +G+ +EQ++L++ LV  QYKR      RGTFRV GDSI
Sbjct: 317 SVSCIYGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQSDFARGTFRVRGDSI 376

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           E++P+HLED  WR+ +FG+++E I EF PLTG+ I  ++ +K+YANSHYVTPRPTL  A+
Sbjct: 377 ELWPAHLEDRGWRIGLFGDEVESIVEFDPLTGKTISELKFVKVYANSHYVTPRPTLQQAI 436

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           K IK ELK R+ EL K GRL+EAQR++QR T+D+EM+E TG+C  IENYSRYLTGR PGE
Sbjct: 437 KGIKHELKGRIEELTKMGRLIEAQRIDQRCTFDIEMIEATGACNGIENYSRYLTGRKPGE 496

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
           PPPTLFEY+P+++L+F DESHVT+PQI GMYRGDF RKATLAEYGFRLPSC+DNRPLRFE
Sbjct: 497 PPPTLFEYLPDNALVFTDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCLDNRPLRFE 556

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           EW+ +RP T+ VSATPG WE+EQ  G+  EQ+IRPTGLVDP +E+R AR+QV+D+  E+ 
Sbjct: 557 EWDAMRPQTVHVSATPGKWEMEQTGGVFAEQVIRPTGLVDPVIEVRPARSQVDDLLGEVR 616

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             AQ G R L+T LTKRMAEDLTEYL+E ++RVRYMHS++ TLERIEIIRDLRLG FDVL
Sbjct: 617 EVAQAGYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLERIEIIRDLRLGAFDVL 676

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN +++ ILYAD+IT S
Sbjct: 677 IGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNADARCILYADSITGS 736

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
           ++ A+ ET RRR KQL +N++H I PQSVK  I +++  +   D    +  +    +++ 
Sbjct: 737 MERAMAETERRRAKQLAYNEEHGITPQSVKRGIADILSSVFERDHVQVDTGLAKDAITV- 795

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
               KA +  L K+M  AA +L+FEEAAR+RDE+KRL+++   
Sbjct: 796 GHNLKAVMADLEKRMRAAAADLDFEEAARLRDELKRLQATELL 838


>gi|27382542|ref|NP_774071.1| excinuclease ABC subunit B [Bradyrhizobium japonicum USDA 110]
 gi|27355714|dbj|BAC52696.1| excinuclease ABC subunit B [Bradyrhizobium japonicum USDA 110]
          Length = 975

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 468/783 (59%), Positives = 567/783 (72%), Gaps = 32/783 (4%)

Query: 47  RRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQS-----------------QSSISMSEK 89
           RR   EA  HR  A+                 Q+                 Q  +   E 
Sbjct: 71  RRAGGEAAAHRARASTPKDFPSDRPAGLDEAPQANYGTAATIPTLDPELARQLGLPTEED 130

Query: 90  QTREISEQ--------TMTPSVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKD 137
               ++           +  +  AL  LI+   P  +      K+WTPHR          
Sbjct: 131 DAEALARPPRSKMEALGVKATADALESLIREGRPEFRKDDGSTKVWTPHRPPRPEKSEGG 190

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++++ Y P GDQP AIA+L++GI   ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI
Sbjct: 191 VR-FEIKSHYEPRGDQPTAIAELVEGIERNDRSQVLLGVTGSGKTYTMAKVIEATQRPAI 249

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++APNK LAAQLY EFKNFFP NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDR
Sbjct: 250 ILAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDR 309

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M   LK G+ ++Q++L++ LV  QY
Sbjct: 310 MRHSATRALLERDDVIIVASVSCIYGIGSVETYTAMTFALKKGERIDQRQLIADLVALQY 369

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR      RGTFRV GD I+IFP+H ED AWRV++FG+ IE I EF PLTG K   +E I
Sbjct: 370 KRTQADFTRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDTIETIEEFDPLTGHKQDELEFI 429

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           K+YANSHYVTPRPTL  A+K IK ELK RL +L  +GRLLEAQRLEQR T+DLEM+E TG
Sbjct: 430 KMYANSHYVTPRPTLVQAIKSIKSELKQRLDQLHDQGRLLEAQRLEQRTTFDLEMMEATG 489

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC  IENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHVT+PQI  M++GDF RKATL
Sbjct: 490 SCAGIENYSRYLTGRLPGEPPPTLFEYVPDNALVFADESHVTVPQIGAMFKGDFRRKATL 549

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
           AEYGFRLPSCMDNRPLRFEEW+ +RP TI VSATP  WEL +  G+ VEQ+IRPTGL+DP
Sbjct: 550 AEYGFRLPSCMDNRPLRFEEWDMMRPQTIAVSATPSGWELNESGGVFVEQVIRPTGLIDP 609

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           PV IR ARTQV+D+  E+   AQ G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ 
Sbjct: 610 PVNIRPARTQVDDLVGEVRATAQAGYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDID 669

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ERIEIIRDLRLG FD LVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 670 TIERIEIIRDLRLGAFDALVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGR 729

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ KVILYAD +T S++ AI ET RRREKQ+E+N  + I P+SVK++I ++++ + 
Sbjct: 730 AARNVDGKVILYADQMTGSMERAIAETNRRREKQVEYNTANGITPESVKKQIGDILNSVY 789

Query: 738 LEDAATTNI-SIDAQQLSLS-KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             D     +   D     +S     +A L  L  +M  AA +LNFEEAAR+RDE+KRL++
Sbjct: 790 ERDHVLVEVGGQDMTDDVISIGHNFEAVLADLETRMREAAADLNFEEAARLRDEVKRLRA 849

Query: 796 SPY 798
           +  
Sbjct: 850 TEL 852


>gi|218532313|ref|YP_002423129.1| excinuclease ABC subunit B [Methylobacterium chloromethanicum CM4]
 gi|218524616|gb|ACK85201.1| excinuclease ABC, B subunit [Methylobacterium chloromethanicum CM4]
          Length = 916

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 443/718 (61%), Positives = 569/718 (79%), Gaps = 2/718 (0%)

Query: 82  SSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFF 141
           +  +  + +T  ++ + ++ +V+AL RL+   NPL KNG+ W PHR          +  F
Sbjct: 124 APETAPDGETPSLATEGVSATVEALERLLVEGNPLFKNGEAWVPHRPERPAKSEGGVK-F 182

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
            +++++ P+GDQP AIA L++G+ + E+ Q+LLGVTGSGKTFTMAKVIE  QRPA+++AP
Sbjct: 183 TLKSEFTPAGDQPTAIAALVEGVRTAERDQVLLGVTGSGKTFTMAKVIEETQRPALILAP 242

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRHS
Sbjct: 243 NKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHS 302

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           ATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M   + +G+ +EQ++L++ LV  QYKR  
Sbjct: 303 ATRALLERDDVIIVASVSCIYGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQ 362

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               RGTFRV GD IE++P+HLED  WR+ +FG++IE I EF PLTG+K+  ++ +K+YA
Sbjct: 363 SDFARGTFRVRGDVIELWPAHLEDRGWRIGLFGDEIESIVEFDPLTGKKLNELKFVKVYA 422

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
           NSHYVTPRPTL  A+K IK ELK+R+ EL + GRL+EAQRLEQR T+D+EM+E TG+C  
Sbjct: 423 NSHYVTPRPTLQQAIKGIKTELKLRVEELTRMGRLIEAQRLEQRCTFDIEMIEATGACNG 482

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHVT+PQI GMY+GDF RKATLAEYG
Sbjct: 483 IENYSRYLTGRKPGEPPPTLFEYLPDNALVFTDESHVTVPQIGGMYKGDFRRKATLAEYG 542

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPSC+DNRPLRFEEW+ +RP ++ VSATP  WE+E+  G+  EQ+IRPTGLVDP +EI
Sbjct: 543 FRLPSCLDNRPLRFEEWDAMRPQSVHVSATPAKWEMERTAGVFAEQVIRPTGLVDPVIEI 602

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R AR+QV+D+  E+   AQ G R L+T LTKRMAEDLTEYL+E ++RVRYMHS++ TLER
Sbjct: 603 RPARSQVDDLLGEVREVAQAGYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLER 662

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           IEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN
Sbjct: 663 IEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARN 722

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
            +++ ILYAD IT S++ A+ ET RRR+KQL +N++H I PQSVK  I ++++ +   D 
Sbjct: 723 ADARCILYADNITGSMERAMAETERRRQKQLAYNEEHGITPQSVKRGISDILESVYERDH 782

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
              +  +    +++     KA +  L K+M  AA +L+FEEAAR+RDE+KRL+++   
Sbjct: 783 VRVDTGLAKDAITV-GHNLKAVMADLEKRMRAAAADLDFEEAARLRDELKRLQATELM 839


>gi|296444513|ref|ZP_06886478.1| excinuclease ABC, B subunit [Methylosinus trichosporium OB3b]
 gi|296258160|gb|EFH05222.1| excinuclease ABC, B subunit [Methylosinus trichosporium OB3b]
          Length = 842

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/770 (58%), Positives = 568/770 (73%), Gaps = 17/770 (2%)

Query: 43  ADAMRRIRSEAGKHRKNAAKR----------MLIHQRENTASKGEFQSQSSISMSEKQTR 92
            D  R  R++A K                           A +  +   + I + ++   
Sbjct: 9   KDPARPTRAKAAKPEVAPIAPHLQALLNPGLAERQAGFEEAPQAGYDPGAVIGVDDELVE 68

Query: 93  EI---SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHP 149
           ++       +T ++++L +L++  +P L+  K WTPHR          +  F + +DY P
Sbjct: 69  KLELRGPGGVTATMESLEQLLKLGDPNLREKKPWTPHRPERPQKSEGGVK-FDLVSDYEP 127

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQL 209
            GDQP AIA+L  G+ + E+ Q+LLGVTGSGKT+TMA+VI   QRPA+V+APNK LAAQL
Sbjct: 128 RGDQPQAIAELTAGVGANERDQVLLGVTGSGKTYTMAQVIARTQRPALVLAPNKTLAAQL 187

Query: 210 YSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER 269
           Y EFK+FFP+NAVEYFVSYYDYYQPEAYVPRTDTYIEKESS+NEQIDRMRH+ATRSLLER
Sbjct: 188 YGEFKSFFPNNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSVNEQIDRMRHAATRSLLER 247

Query: 270 NDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           +D I+V+SVSCIYGIGSVE+Y+ M   + +G+ +EQ++L++ LV  QY+R      RGTF
Sbjct: 248 DDVIIVASVSCIYGIGSVETYTAMTFGVSLGEKLEQRQLVTDLVALQYRRISSDFTRGTF 307

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
           RV GD+++IFP+H ED  WR+S FG+++E I EF PLTG+K +++E +K+YANSHYVTPR
Sbjct: 308 RVRGDTVDIFPAHYEDRGWRISFFGDEVESICEFDPLTGKKTQDLEFVKVYANSHYVTPR 367

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
           PTL  ++K IK+EL+ RL EL   GRL+EAQRLEQR  +DLEM+E TGSC  IENYSRYL
Sbjct: 368 PTLLQSIKAIKDELRARLGELNNAGRLVEAQRLEQRTRFDLEMMEATGSCAGIENYSRYL 427

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
           TGR PGEPPPTLFEY+P+++++F DESHV+IPQI  MY+GDF RKATLAEYGFRLPSCMD
Sbjct: 428 TGRRPGEPPPTLFEYLPDNAIVFADESHVSIPQIGAMYKGDFRRKATLAEYGFRLPSCMD 487

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           NRPLRFEEW+ +RP TI VSATPG WE+EQ  G+ VEQ+IRPTGL+DPPVEIR AR+QV+
Sbjct: 488 NRPLRFEEWDAMRPQTIAVSATPGDWEMEQTGGVFVEQVIRPTGLIDPPVEIRPARSQVD 547

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+  E+   +  G R L+TVLTKRMAEDLTEYL+E  +RVRYMHS++ T+ERIEIIRDLR
Sbjct: 548 DLLGEVKAVSDLGYRSLVTVLTKRMAEDLTEYLHENGVRVRYMHSDIDTIERIEIIRDLR 607

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           LG FDVLVGINLLREGLDIPECG V ILDADKEGFLRS+TSL+QTIGRAARNV+ +VILY
Sbjct: 608 LGAFDVLVGINLLREGLDIPECGFVGILDADKEGFLRSETSLVQTIGRAARNVDGRVILY 667

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
           AD++T S++ A+DET RRR KQ  +N +H I P S+K  I +++  +  +D  T +  + 
Sbjct: 668 ADSVTGSMKRAMDETDRRRAKQQAYNAEHGITPASIKRDIADILGSLAEQDHVTVDAGLS 727

Query: 750 AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
                      +A L  L K+M  AA +L FEEAAR+RDEI RL+ +   
Sbjct: 728 ---ELAPGHNMQATLADLEKRMKAAAADLAFEEAARLRDEISRLQRAELL 774


>gi|192293183|ref|YP_001993788.1| excinuclease ABC subunit B [Rhodopseudomonas palustris TIE-1]
 gi|192286932|gb|ACF03313.1| excinuclease ABC, B subunit [Rhodopseudomonas palustris TIE-1]
          Length = 1011

 Score =  907 bits (2344), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/753 (60%), Positives = 566/753 (75%), Gaps = 21/753 (2%)

Query: 61  AKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG 120
           A+++ +   E+ A       +S +              +  + +AL  LI+   P  K  
Sbjct: 127 ARQLGLPTEEDDAEALARPPRSKMEA----------LGVKATAEALESLIRDGRPEFKGE 176

Query: 121 ----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGV 176
               K+W PHR          +  F +++DY P GDQP AI +L++G+   ++ Q+LLGV
Sbjct: 177 DGGVKLWVPHRPPRPEKSEGGVR-FVLKSDYQPRGDQPTAIKELVEGLDRSDRTQVLLGV 235

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           TGSGKT+TMAKVIEA QRPAI++APNK LAAQLY EFKNFFP NAVEYFVSYYDYYQPEA
Sbjct: 236 TGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEA 295

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           YVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M   
Sbjct: 296 YVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYTAMTFA 355

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK G+ ++Q++L++ LV  QYKR      RGTFRV GD I+IFP+H ED AWRV MFG++
Sbjct: 356 LKRGERIDQRQLIADLVALQYKRTQADFSRGTFRVRGDVIDIFPAHYEDRAWRVKMFGDE 415

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           IE I EF PLTG K   +E +KIYANSHYVTPRPTL  A++ IK ELK RL +L  +GRL
Sbjct: 416 IEGIEEFDPLTGHKQDELEFVKIYANSHYVTPRPTLIQAIQSIKTELKWRLDQLHAQGRL 475

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           LEAQRLEQR T+D+EM+E TGSC  IENYSRYLTGR PGEPPPTLFEY+P+++L+F DES
Sbjct: 476 LEAQRLEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEPPPTLFEYVPDNALVFADES 535

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536
           HV+IPQI  M++GDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP T+ VSATP +WE
Sbjct: 536 HVSIPQIGAMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDMMRPQTVAVSATPAAWE 595

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           L +  G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+  E+   A +G R L+TVLTKRMAE
Sbjct: 596 LNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRATAARGYRTLITVLTKRMAE 655

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DLTE+L+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LVGINLLREGLDIPEC LVAI
Sbjct: 656 DLTEFLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALVGINLLREGLDIPECALVAI 715

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
           LDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q +IDET RRREKQ+E+N 
Sbjct: 716 LDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQMTGSMQRSIDETNRRREKQIEYNT 775

Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNISIDA-----QQLSLSKKKGKAHLKSLRKQM 771
            H I P+SVK+ I ++++ +   D     I            ++     +A L  L  +M
Sbjct: 776 AHGITPESVKKSIGDILNSVYERDHVLVEIGDGKGAGFTDDAAVIGHNFEAVLADLETRM 835

Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
             AA +LNFEEAAR+RDE+KRL+++     +DD
Sbjct: 836 REAAADLNFEEAARLRDEVKRLRATE-LAVIDD 867


>gi|254563382|ref|YP_003070477.1| UvrABC system protein B [Methylobacterium extorquens DM4]
 gi|254270660|emb|CAX26664.1| UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B)
           [Methylobacterium extorquens DM4]
          Length = 908

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 442/718 (61%), Positives = 568/718 (79%), Gaps = 2/718 (0%)

Query: 82  SSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFF 141
           +  +  + +T  ++ + ++ +V+AL RL+   NPL KNG+ W PHR          +  F
Sbjct: 116 APETAPDAETPSLATEGVSATVEALERLLVEGNPLFKNGEAWVPHRPERPAKSEGGVK-F 174

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
            +++++ P+GDQP AIA L++G+ + E+ Q+LLGVTGSGKTFTMAKVIE  QRPA+++AP
Sbjct: 175 TLKSEFTPAGDQPTAIAALVEGVRTAERDQVLLGVTGSGKTFTMAKVIEETQRPALILAP 234

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRHS
Sbjct: 235 NKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHS 294

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           ATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M   + +G+ +EQ++L++ LV  QYKR  
Sbjct: 295 ATRALLERDDVIIVASVSCIYGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQ 354

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               RGTFRV GD IE++P+HLED  WR+ +FG++IE I EF PLTG+K+  ++ +K+YA
Sbjct: 355 SDFARGTFRVRGDVIELWPAHLEDRGWRIGLFGDEIESIVEFDPLTGKKLNELKFVKVYA 414

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
           NSHYVTPRPTL  A+K IK ELK+R+ EL + GRL+EAQRLEQR T+D+EM+E TG+C  
Sbjct: 415 NSHYVTPRPTLQQAIKGIKTELKLRVEELTRMGRLIEAQRLEQRCTFDIEMIEATGACNG 474

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHVT+PQI GMY+ DF RKATLAEYG
Sbjct: 475 IENYSRYLTGRKPGEPPPTLFEYLPDNALVFTDESHVTVPQIGGMYKSDFRRKATLAEYG 534

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPSC+DNRPLRFEEW+ +RP ++ VSATP  WE+E+  G+  EQ+IRPTGLVDP +EI
Sbjct: 535 FRLPSCLDNRPLRFEEWDAMRPQSVHVSATPAKWEMERTAGVFAEQVIRPTGLVDPVIEI 594

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R AR+QV+D+  E+   AQ G R L+T LTKRMAEDLTEYL+E ++RVRYMHS++ TLER
Sbjct: 595 RPARSQVDDLLGEVREVAQAGYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLER 654

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           IEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN
Sbjct: 655 IEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARN 714

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
            +++ ILYAD IT S++ A+ ET RRR+KQL +N++H I PQSVK  I ++++ +   D 
Sbjct: 715 ADARCILYADNITGSMERAMAETERRRQKQLAYNEEHGITPQSVKRGISDILESVYERDH 774

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
              +  +    +++     KA +  L K+M  AA +L+FEEAAR+RDE+KRL+++   
Sbjct: 775 VRVDTGLAKDAITV-GHNLKAVMADLEKRMRAAAADLDFEEAARLRDELKRLQATELM 831


>gi|240140873|ref|YP_002965353.1| UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B)
           [Methylobacterium extorquens AM1]
 gi|240010850|gb|ACS42076.1| UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B)
           [Methylobacterium extorquens AM1]
          Length = 908

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 444/718 (61%), Positives = 569/718 (79%), Gaps = 2/718 (0%)

Query: 82  SSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFF 141
           +  +  + +T  ++ + ++ +V+AL RL+   NPL KNG+ W PHR          +  F
Sbjct: 116 APETAPDAETPSLATEGVSATVEALERLLVEGNPLFKNGEAWVPHRPERPAKSEGGVK-F 174

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
            +++++ P+GDQP AIA L++G+ + E+ Q+LLGVTGSGKTFTMAKVIE  QRPA+++AP
Sbjct: 175 TLKSEFTPAGDQPTAIAALVEGVRTAERDQVLLGVTGSGKTFTMAKVIEETQRPALILAP 234

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPR+DT+IEKESSINEQIDRMRHS
Sbjct: 235 NKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHS 294

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           ATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M   + +G+ +EQ++L++ LV  QYKR  
Sbjct: 295 ATRALLERDDVIIVASVSCIYGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQ 354

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               RGTFRV GD IE++P+HLED  WR+ +FG++IE I EF PLTG+K+  ++ +KIYA
Sbjct: 355 SDFARGTFRVRGDVIELWPAHLEDRGWRIGLFGDEIESIVEFDPLTGKKLNELKFVKIYA 414

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
           NSHYVTPRPTL  A+K IK ELK+R+ EL + GRL+EAQRLEQR T+D+EM+E TG+C  
Sbjct: 415 NSHYVTPRPTLQQAIKGIKTELKLRVEELTRMGRLIEAQRLEQRCTFDIEMIEATGACNG 474

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHVT+PQI GMY+GDF RKATLAEYG
Sbjct: 475 IENYSRYLTGRKPGEPPPTLFEYLPDNALVFTDESHVTVPQIGGMYKGDFRRKATLAEYG 534

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPSC+DNRPLRFEEW+ +RP ++ VSATP  WE+E+  G+  EQ+IRPTGLVDP +EI
Sbjct: 535 FRLPSCLDNRPLRFEEWDAMRPQSVHVSATPAKWEMERTAGVFAEQVIRPTGLVDPVIEI 594

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R AR+QV+D+  E+   AQ G R L+T LTKRMAEDLTEYL+E ++RVRYMHS++ TLER
Sbjct: 595 RPARSQVDDLLGEVREVAQAGYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLER 654

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           IEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN
Sbjct: 655 IEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARN 714

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
            +++ ILYAD IT S++ A+ ET RRR+KQL +N++H I PQSVK  I ++++ +   D 
Sbjct: 715 ADARCILYADNITGSMERAMAETERRRQKQLAYNEEHGITPQSVKRGISDILESVYERDH 774

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
              +  +    +++     KA +  L K+M  AA +L+FEEAAR+RDE+KRL+++   
Sbjct: 775 VRVDTGLAKDAITV-GHNLKAVMADLEKRMRAAAADLDFEEAARLRDELKRLQATELM 831


>gi|85716011|ref|ZP_01046988.1| excinuclease ABC subunit B [Nitrobacter sp. Nb-311A]
 gi|85697209|gb|EAQ35090.1| excinuclease ABC subunit B [Nitrobacter sp. Nb-311A]
          Length = 1008

 Score =  904 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/778 (58%), Positives = 574/778 (73%), Gaps = 18/778 (2%)

Query: 43  ADAMRRIRSEAGKHR---KNAAKRMLIHQRENTASKGEFQSQSSIS---MSEKQTREISE 96
            +  R    EA +      N      I   +   ++      +      ++     ++  
Sbjct: 106 GEVARDGFDEAPQPEFATPNYGTSATIPMLDPELARQLGLPTAEDDEDALARPPRSKMEG 165

Query: 97  QTMTPSVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGD 152
             +  + ++L  L++   P  K      K+WTPHR          +  F+++++Y P GD
Sbjct: 166 LGVKATAESLEALLRDGRPEFKKDDGSLKLWTPHRPPRPEKSEGGVR-FEIKSEYQPKGD 224

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           QP AI +L++GI   ++ Q+LLGVTGSGKT+TMAKVIEA QRPA+++APNK LAAQLY E
Sbjct: 225 QPQAIRELVEGIRRNDRTQVLLGVTGSGKTYTMAKVIEATQRPALILAPNKTLAAQLYGE 284

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
           FK+FFP NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D 
Sbjct: 285 FKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDV 344

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           I+V+SVSCIYGIGSVE+Y+ M   L+ G+ ++Q++L++ LV  QYKR      RGTFRV 
Sbjct: 345 IIVASVSCIYGIGSVETYTAMTFALRRGERIDQRQLIADLVALQYKRTSADFTRGTFRVR 404

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD I+IFP+H ED AWRV++FG+++E I EF PLTG K   ++ IK+Y+NSHYVTPRPTL
Sbjct: 405 GDVIDIFPAHYEDRAWRVNLFGDEVESIEEFDPLTGHKQDELDFIKVYSNSHYVTPRPTL 464

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
             A+K IK ELK RL +L  +GRLLEAQRLEQR T+DLEM+E TGSC  IENYSRYLTGR
Sbjct: 465 VQAIKSIKVELKQRLDQLHAQGRLLEAQRLEQRTTFDLEMMEATGSCAGIENYSRYLTGR 524

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
            PGEPPPTLFEY+P+++L+F DESHV++PQI GM+RGDF RKATLAEYGFRLPSCMDNRP
Sbjct: 525 RPGEPPPTLFEYVPDNALVFADESHVSVPQIGGMFRGDFRRKATLAEYGFRLPSCMDNRP 584

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           LRFEEW+ +RP T+ VSATPG+WEL +  G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+ 
Sbjct: 585 LRFEEWDMMRPQTVAVSATPGAWELNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLV 644

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            E+   A +G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG 
Sbjct: 645 GEVRATAAKGYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGA 704

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           FD LVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV  +VILYAD 
Sbjct: 705 FDALVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVEGRVILYADQ 764

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
           +T S+Q +I ET RRREKQ+E+N  + I P+SV++ I ++++ +   D     I   A  
Sbjct: 765 VTGSMQRSIAETDRRREKQVEYNTANGITPESVRKSIGDILNSVYERDHVLVEIGDGAGS 824

Query: 753 LSLSKKKG------KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
             L+          +A L  L  +M  AA +LNFEEAAR+RDE+KRL+++     +DD
Sbjct: 825 GFLADDAIAIGHNFEAVLSDLETRMREAAADLNFEEAARLRDEVKRLRATE-LAVIDD 881


>gi|86751253|ref|YP_487749.1| excinuclease ABC subunit B [Rhodopseudomonas palustris HaA2]
 gi|86574281|gb|ABD08838.1| Excinuclease ABC subunit B [Rhodopseudomonas palustris HaA2]
          Length = 1017

 Score =  903 bits (2334), Expect = 0.0,   Method: Composition-based stats.
 Identities = 457/747 (61%), Positives = 562/747 (75%), Gaps = 20/747 (2%)

Query: 61  AKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLK-- 118
           A+++ +   E+ A+      ++ +              +  + +AL  LI+   P  K  
Sbjct: 160 ARQLGLPTEEDDAAAMARPPRNKMEA----------LGVQATAEALEALIRDGRPEFKGD 209

Query: 119 --NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGV 176
             N K+W PHR          +  F +++DY P GDQP AI +L++GI   ++ Q+LLGV
Sbjct: 210 DGNVKLWVPHRPPRPEKSEGGVR-FVIKSDYEPKGDQPTAIKELVEGIARNDRTQVLLGV 268

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           TGSGKT+TMAKVIEA QRPAI++APNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEA
Sbjct: 269 TGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEA 328

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           YVPRTDTYIEK+SSINEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M   
Sbjct: 329 YVPRTDTYIEKDSSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYTAMTFA 388

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK G+ ++Q+ L++ LV  QYKR      RGTFRV GD I+IFP+H ED AWRV MFG++
Sbjct: 389 LKKGERIDQRALIADLVALQYKRTQADFTRGTFRVRGDVIDIFPAHYEDRAWRVKMFGDE 448

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           +E I EF PLTG K   +E +KIYANSHYVTPRPTL  A+K IK ELK RL +L  +GRL
Sbjct: 449 VEAIEEFDPLTGHKQDELEFVKIYANSHYVTPRPTLIQAIKSIKSELKWRLDQLHAQGRL 508

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           LEAQRLEQR T+D+EM+E TGSC  IENYSRYLTGR PGEPPPTLFEY+P+++L+F DES
Sbjct: 509 LEAQRLEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEPPPTLFEYVPDNALVFADES 568

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536
           HVT+PQI GM++GDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP ++ VSATP +WE
Sbjct: 569 HVTVPQIGGMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDMMRPQSVAVSATPAAWE 628

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           L +  G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+  E+   A  G R L+TVLTKRMAE
Sbjct: 629 LNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRATANAGYRSLITVLTKRMAE 688

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DLTE+L+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LVGINLLREGLDIPEC LVAI
Sbjct: 689 DLTEFLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALVGINLLREGLDIPECALVAI 748

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
           LDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q A+DET RRREKQ+E+N 
Sbjct: 749 LDADKEGFLRSETSLIQTIGRAARNVDGKVILYADHVTGSMQRAMDETGRRREKQIEYNT 808

Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNISIDA-----QQLSLSKKKGKAHLKSLRKQM 771
            H I P+S+K+ I +++  +   D     I            ++      A L  L  +M
Sbjct: 809 AHGITPESIKKSIGDILGSVYERDHVLVEIGDGKGSGFTDDAAVIGHNFGAVLADLETRM 868

Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPY 798
             AA +LNFEEAAR+RDE+KRL+++  
Sbjct: 869 REAAADLNFEEAARLRDEVKRLRATEL 895


>gi|90425612|ref|YP_533982.1| excinuclease ABC subunit B [Rhodopseudomonas palustris BisB18]
 gi|90107626|gb|ABD89663.1| Excinuclease ABC subunit B [Rhodopseudomonas palustris BisB18]
          Length = 1053

 Score =  902 bits (2332), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/725 (63%), Positives = 558/725 (76%), Gaps = 11/725 (1%)

Query: 84  ISMSEKQTREISEQTMTPSVQALARLIQSDNPLLK----NGKIWTPHRSWSINNHSKDIT 139
            +++     ++    +  +  AL  LI+   P  K    N K+WTPHR          + 
Sbjct: 174 AALARPPRNKMEALGVQATADALENLIRDGRPEFKGEDGNVKLWTPHRPPRPEKTEGGVR 233

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F ++++Y P GDQP AI +L++GI   ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI++
Sbjct: 234 -FVIKSEYEPKGDQPTAIKELVEGISRNDRTQVLLGVTGSGKTYTMAKVIEATQRPAIIL 292

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMR
Sbjct: 293 APNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMR 352

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+ATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M   LK G+ ++Q+ L++ LV  QYKR
Sbjct: 353 HAATRALLERDDVIIVASVSCIYGIGSVETYTAMTFALKKGERIDQRALIADLVALQYKR 412

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD I+IFP+H ED AWRV++FG+ +E I EF PLTG K   +E IKI
Sbjct: 413 TQADFTRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDTVETIEEFDPLTGHKQDELEFIKI 472

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YANSHYVTPRPTL  A+K IK ELK RL +L  +GRLLEAQRLEQR T+D+EM+E TGSC
Sbjct: 473 YANSHYVTPRPTLLQAIKSIKAELKWRLDQLNDQGRLLEAQRLEQRTTFDIEMMEATGSC 532

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHVT+PQI GM++GDF RKATLAE
Sbjct: 533 AGIENYSRYLTGRRPGEPPPTLFEYVPDNALVFADESHVTVPQIGGMFKGDFRRKATLAE 592

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPSCMDNRPLRFEEW+ +RP ++ VSATP +WEL +  G+ VEQ+IRPTGL+DPPV
Sbjct: 593 YGFRLPSCMDNRPLRFEEWDMMRPQSVAVSATPSAWELNESGGVFVEQVIRPTGLIDPPV 652

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            IR ARTQV+D+  E+   AQ G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+
Sbjct: 653 NIRPARTQVDDLVGEVRATAQAGYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTI 712

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLRLG FD LVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAA
Sbjct: 713 ERIEIIRDLRLGAFDALVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAA 772

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+ KVILYAD IT S++ AI ET RRREKQ+E+N +HNI P+S+K+ I ++++ +   
Sbjct: 773 RNVDGKVILYADRITGSMERAIAETDRRREKQVEYNTEHNITPESIKKSIGDILNSVYER 832

Query: 740 DAATTNISIDAQQLSLSKK------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           D     I    Q  S S          +  L  L  +M  AA +LNFEEAAR+RDE+KRL
Sbjct: 833 DHVLVEIGGGGQGGSWSDDVGAIGHNFETVLADLETRMREAAADLNFEEAARLRDEVKRL 892

Query: 794 KSSPY 798
           +++  
Sbjct: 893 RATEL 897


>gi|92118421|ref|YP_578150.1| excinuclease ABC subunit B [Nitrobacter hamburgensis X14]
 gi|91801315|gb|ABE63690.1| Excinuclease ABC subunit B [Nitrobacter hamburgensis X14]
          Length = 1011

 Score =  902 bits (2331), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/786 (58%), Positives = 574/786 (73%), Gaps = 20/786 (2%)

Query: 32  EKQLEVDKTMVADAMRRIRSEAGK-----HRKNAAKRMLIHQRENTASKGEFQSQSSISM 86
           + +L  ++     +      + G+      +   A           A   E   Q  +  
Sbjct: 95  KSELTAERDAAHSSPPSSGEDVGRGFDEAQQSEFATPTYGTSATVPALDPELARQLGLPT 154

Query: 87  SEKQTREISEQ--------TMTPSVQALARLIQSDNPLLK--NGKI--WTPHRSWSINNH 134
           +E     ++           +  + ++L  L++   P  +  NG +  WTPHR       
Sbjct: 155 AEDDDEALARPPRNKMEGLGVKATAESLEALLRDGRPEFRGDNGAMKVWTPHRPPRPEKS 214

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
              +  F ++++Y P GDQP AI +L++GI+  ++ Q+LLGVTGSGKT+TMAKVIEA QR
Sbjct: 215 EGGVR-FVIKSEYEPKGDQPTAIKELVEGINRNDRTQVLLGVTGSGKTYTMAKVIEATQR 273

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PA+++APNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQ
Sbjct: 274 PALILAPNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQ 333

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           IDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M   L+ G+ ++Q++L++ LV 
Sbjct: 334 IDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYTAMTFALRRGERIDQRQLIADLVA 393

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QYKR      RGTFRV GD I+IFP+H ED +WRV++FG+++E I EF PLTG K   +
Sbjct: 394 LQYKRTSADFTRGTFRVRGDVIDIFPAHYEDRSWRVNLFGDEVESIEEFDPLTGHKQDEL 453

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           E IK+Y+NSHYVTPRPTL  A+K IK ELKMRL EL  +GRLLEAQRLEQR T+DLEM+E
Sbjct: 454 EFIKVYSNSHYVTPRPTLIQAIKSIKSELKMRLDELHAQGRLLEAQRLEQRTTFDLEMME 513

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            TGSC  IENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHV++PQI GM+RGDF RK
Sbjct: 514 ATGSCAGIENYSRYLTGRRPGEPPPTLFEYVPDNALVFADESHVSVPQIGGMFRGDFRRK 573

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           ATLAEYGFRLPSCMDNRPLRFEEW+ +RP ++ VSATP +WEL +  G+ VEQ+IRPTGL
Sbjct: 574 ATLAEYGFRLPSCMDNRPLRFEEWDMMRPQSVAVSATPSAWELNESGGVFVEQVIRPTGL 633

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DPP++IR ARTQV+D+  E+   A  G R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS
Sbjct: 634 IDPPIDIRPARTQVDDLVGEVRATAAAGYRSLVTVLTKRMAEDLTEYLHEQGIRVRYMHS 693

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ERIEIIRDLRLG FD LVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQT
Sbjct: 694 DIDTIERIEIIRDLRLGAFDALVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQT 753

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARNV+ +VILYAD +T S+Q AI ET RRREKQ+E+N  H I P+S+K+ I ++++
Sbjct: 754 IGRAARNVDGRVILYADQVTGSMQRAIAETDRRREKQVEYNTVHGITPESIKKSIGDILN 813

Query: 735 PILLEDAATTNISID--AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +   D     I     A          +A L  L  +M  AA +LNFEEAAR+RDE+KR
Sbjct: 814 SVYERDHVLVEIGDGGMADDAVAIGHNFEAVLSDLETRMREAAADLNFEEAARLRDEVKR 873

Query: 793 LKSSPY 798
           L+++  
Sbjct: 874 LRATEL 879


>gi|91978448|ref|YP_571107.1| excinuclease ABC subunit B [Rhodopseudomonas palustris BisB5]
 gi|91684904|gb|ABE41206.1| Excinuclease ABC subunit B [Rhodopseudomonas palustris BisB5]
          Length = 1047

 Score =  902 bits (2331), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/730 (62%), Positives = 558/730 (76%), Gaps = 11/730 (1%)

Query: 84  ISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDIT 139
            +M+     ++    +  + +AL  LI+   P  K      K+W PHR          + 
Sbjct: 203 AAMARPPRNKMEALGVQATAEALENLIREGRPEFKGDDGGVKLWVPHRPPRPEKSEGGVR 262

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F ++++Y P GDQP AI +L++GI   ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI++
Sbjct: 263 -FVIKSEYEPKGDQPTAIKELVEGIDRNDRTQVLLGVTGSGKTYTMAKVIEATQRPAIIL 321

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMR
Sbjct: 322 APNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMR 381

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M   LK G+ ++Q++L++ LV  QYKR
Sbjct: 382 HSATRALLERDDVIIVASVSCIYGIGSVETYTAMTFALKKGERIDQRQLIADLVALQYKR 441

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD I+IFP+H ED AWRV +FG+ +E I EF PLTG K   +E +KI
Sbjct: 442 TQADFTRGTFRVRGDVIDIFPAHYEDRAWRVGLFGDTVETIEEFDPLTGHKQDELEFVKI 501

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YANSHYVTPRPTL  A+K IK ELK RL +L  +GRLLEAQRLEQR T+D+EM+E TGSC
Sbjct: 502 YANSHYVTPRPTLIQAIKSIKSELKWRLDQLHAQGRLLEAQRLEQRTTFDIEMMEATGSC 561

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHVT+PQI GM++GDF RKATLAE
Sbjct: 562 AGIENYSRYLTGRRPGEPPPTLFEYVPDNALVFADESHVTVPQIGGMFKGDFRRKATLAE 621

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPSCMDNRPLRFEEW+ +RP ++ VSATP +WEL +  G+ VEQ+IRPTGL+DPPV
Sbjct: 622 YGFRLPSCMDNRPLRFEEWDMMRPQSVAVSATPAAWELNESGGVFVEQVIRPTGLIDPPV 681

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           +IR ARTQV+D+  E+   AQ G R L+TVLTKRMAEDLTE+L+E+ IRVRYMHS++ T+
Sbjct: 682 DIRPARTQVDDLVGEVRATAQAGYRSLITVLTKRMAEDLTEFLHEQGIRVRYMHSDIDTI 741

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLRLG FD LVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAA
Sbjct: 742 ERIEIIRDLRLGAFDALVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAA 801

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+ KVILYAD +T S+Q A+DET RRREKQ+E+N  H I P+S+K+ I +++  +   
Sbjct: 802 RNVDGKVILYADHVTGSMQRAMDETGRRREKQIEYNTAHGITPESIKKSIGDILGSVYER 861

Query: 740 DAATTNISIDA-----QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           D     I            ++      A L  L  +M  AA +LNFEEAAR+RDE+KRL+
Sbjct: 862 DHVLVEIGDGKGSGFTDDAAVIGHNFGAVLADLETRMREAAADLNFEEAARLRDEVKRLR 921

Query: 795 SSPYFQGLDD 804
           ++     +DD
Sbjct: 922 ATE-LAVIDD 930


>gi|115526185|ref|YP_783096.1| excinuclease ABC subunit B [Rhodopseudomonas palustris BisA53]
 gi|115520132|gb|ABJ08116.1| Excinuclease ABC subunit B [Rhodopseudomonas palustris BisA53]
          Length = 1023

 Score =  901 bits (2329), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/726 (62%), Positives = 560/726 (77%), Gaps = 11/726 (1%)

Query: 83  SISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDI 138
             +++     ++    +  + +AL  LI+      ++     K+WTPHR          +
Sbjct: 149 DAALARPPRSKMEGLGVQATAEALENLIREGRAEFRDESGGVKLWTPHRPPRPEKTEGGV 208

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F ++++Y P GDQP AI +L++GI+  ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI+
Sbjct: 209 R-FVIKSEYEPKGDQPTAIKELVEGINRNDRTQVLLGVTGSGKTYTMAKVIEATQRPAII 267

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY EFKNFFP NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRM
Sbjct: 268 LAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRM 327

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+ATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M   LK G+ ++Q++L++ LV  QYK
Sbjct: 328 RHAATRALLERDDVIIVASVSCIYGIGSVETYTAMTFALKKGERIDQRQLIADLVALQYK 387

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R      RGTFRV GD I+IFP+H ED AWRV++FG+ +E I EF PLTG K   +E IK
Sbjct: 388 RTQADFSRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDTVETIEEFDPLTGHKQDELEFIK 447

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IYANSHYVTPRPTL  AM+ IK ELKMRL EL  +GRLLEAQRLEQR T+D+EM+E TGS
Sbjct: 448 IYANSHYVTPRPTLIQAMQSIKSELKMRLDELHAQGRLLEAQRLEQRTTFDIEMMEATGS 507

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHVT+PQI GM++GDF RKATLA
Sbjct: 508 CAGIENYSRYLTGRRPGEPPPTLFEYVPDNALVFADESHVTVPQIGGMFKGDFRRKATLA 567

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPSCMDNRPLRFEEW+ +RP ++ VSATP +WEL +  G+ VEQ+IRPTGL+DPP
Sbjct: 568 EYGFRLPSCMDNRPLRFEEWDMMRPQSVAVSATPSAWELNESGGVFVEQVIRPTGLIDPP 627

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V+IR ARTQV+D+  E+   AQ+G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ T
Sbjct: 628 VDIRPARTQVDDLVGEVRATAQKGFRSLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDT 687

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ERIEIIRDLRLG FD LVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRA
Sbjct: 688 IERIEIIRDLRLGAFDALVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRA 747

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV  KVILYAD +T S+Q AIDET RRREKQ+E+N  H I P+S+K+ I ++++ +  
Sbjct: 748 ARNVEGKVILYADRMTGSMQRAIDETNRRREKQVEYNTAHGITPESIKKSIGDILNSVYE 807

Query: 739 EDAATTNISIDAQQLSLSKKKG------KAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            D     I       S S          +  L  L  +M  AA +LNFEEAAR+RDE+KR
Sbjct: 808 RDHVLVEIGGHGGAASWSDDAIAIGHNFETVLADLETRMREAAADLNFEEAARLRDEVKR 867

Query: 793 LKSSPY 798
           L+++  
Sbjct: 868 LRATEL 873


>gi|146342818|ref|YP_001207866.1| excinuclease ABC subunit B [Bradyrhizobium sp. ORS278]
 gi|146195624|emb|CAL79651.1| putative UvrABC system, protein B (UvrB, Excinuclease ABC subunit
           B) [Bradyrhizobium sp. ORS278]
          Length = 1052

 Score =  901 bits (2328), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/757 (60%), Positives = 566/757 (74%), Gaps = 12/757 (1%)

Query: 51  SEAGKHRKNAAKRMLIHQRENTASKGEFQSQSSIS---MSEKQTREISEQTMTPSVQALA 107
           SEA   +        I   +   ++      +      ++     ++    +  + +AL 
Sbjct: 125 SEA--PQAKYGTSATIPTLDPELARQLGLPTAEDDDEALARPPRSKMEALGVKATAEALE 182

Query: 108 RLIQSDNPLLKNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKG 163
            LI+   P  +      K+WTPHR          +  F++++ Y P GDQP AI +L++G
Sbjct: 183 SLIREGRPEFRKDDGSLKVWTPHRPPRPEKSEGGVR-FEIKSAYEPKGDQPQAIKELVEG 241

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +   ++ Q+LLGVTGSGKT+TMAKVIEA QRPA+++APNK LAAQLY EFK+FFP NAVE
Sbjct: 242 VARNDRTQVLLGVTGSGKTYTMAKVIEATQRPALILAPNKTLAAQLYGEFKSFFPDNAVE 301

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
           YFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I+V+SVSCIYG
Sbjct: 302 YFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVIIVASVSCIYG 361

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           IGSVE+Y+ M   LK G+ ++Q++L++ LV  QYKR      RGTFRV GD I+IFP+H 
Sbjct: 362 IGSVETYTAMTFALKKGERIDQRQLIADLVALQYKRTQHDFTRGTFRVRGDVIDIFPAHY 421

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           ED AWRV++FG+ +E I EF PLTG K   +E IK+YANSHYVTPRPTL  AMK IK EL
Sbjct: 422 EDRAWRVNLFGDTVENIEEFDPLTGHKQDELEFIKVYANSHYVTPRPTLVQAMKSIKHEL 481

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           K+RL +L  +GRLLEAQRLEQR T+DLEM+E TGSC  IENYSRYLTGR PGEPPPTLFE
Sbjct: 482 KIRLDQLHAQGRLLEAQRLEQRTTFDLEMMEATGSCAGIENYSRYLTGRLPGEPPPTLFE 541

Query: 464 YIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP 523
           Y+P+++L+F DESHVTIPQI GM+RGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP
Sbjct: 542 YVPDNALVFADESHVTIPQIGGMFRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDMMRP 601

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T+ VSATPG WEL +  G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+  E+   AQ+G 
Sbjct: 602 QTVAVSATPGGWELNEAGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLLGEVRATAQKGY 661

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+TVLTKRMAEDLTEYL+E+ IRVRYMHS++ T+ERIEIIRDLRLG FD LVGINLLR
Sbjct: 662 RSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALVGINLLR 721

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
           EGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S++ A+ E
Sbjct: 722 EGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQVTGSMERAMAE 781

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL--SKKKGK 761
           T RRREKQ+E+N  H I P+SVK+ I ++++ +   D              +       +
Sbjct: 782 TARRREKQVEYNTAHGITPESVKKSIGDILNSVYERDHVLIETGGGTTTDDVISIGHNFE 841

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           A L  L  +M  AA +LNFEEAAR+RDE+KRL+++  
Sbjct: 842 AVLADLETRMREAAADLNFEEAARLRDEVKRLRATEL 878


>gi|39937403|ref|NP_949679.1| excinuclease ABC subunit B [Rhodopseudomonas palustris CGA009]
 gi|39651262|emb|CAE29784.1| possible excinuclease ABC subunit B [Rhodopseudomonas palustris
           CGA009]
          Length = 862

 Score =  899 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/716 (63%), Positives = 555/716 (77%), Gaps = 11/716 (1%)

Query: 98  TMTPSVQALARLIQSDNPLLKNG----KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQ 153
            +  + +AL  LI+   P  K      K+W PHR          +  F +++DY P GDQ
Sbjct: 5   GVKATAEALESLIRDGRPEFKGEDGGVKLWVPHRPPRPEKSEGGVR-FVLKSDYQPRGDQ 63

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
           P AI +L++GI   ++ Q+LLGVTGSGKT+TMAKVIEA QRPAI++APNK LAAQLY EF
Sbjct: 64  PTAIKELVEGIDRNDRTQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEF 123

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           KNFFP NAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER+D I
Sbjct: 124 KNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERDDVI 183

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           +V+SVSCIYGIGSVE+Y+ M   LK G+ ++Q++L++ LV  QYKR      RGTFRV G
Sbjct: 184 IVASVSCIYGIGSVETYTAMTFALKRGERIDQRQLIADLVALQYKRTQADFSRGTFRVRG 243

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D I+IFP+H ED AWRV MFG++IE I EF PLTG K   +E +KIYANSHYVTPRPTL 
Sbjct: 244 DVIDIFPAHYEDRAWRVKMFGDEIEGIEEFDPLTGHKQDELEFVKIYANSHYVTPRPTLI 303

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A++ IK ELK RL +L  +GRLLEAQRLEQR T+D+EM+E TGSC  IENYSRYLTGR 
Sbjct: 304 QAIQSIKTELKWRLDQLHAQGRLLEAQRLEQRTTFDIEMMEATGSCAGIENYSRYLTGRR 363

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
           PGEPPPTLFEY+P+++L+F DESHV+IPQI  M++GDF RKATLAEYGFRLPSCMDNRPL
Sbjct: 364 PGEPPPTLFEYVPDNALVFADESHVSIPQIGAMFKGDFRRKATLAEYGFRLPSCMDNRPL 423

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
           RFEEW+ +RP T+ VSATP +WEL +  G+ VEQ+IRPTGL+DPPV+IR ARTQV+D+  
Sbjct: 424 RFEEWDMMRPPTVAVSATPAAWELNESGGVFVEQVIRPTGLIDPPVDIRPARTQVDDLVG 483

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E+   A +G R L+TVLTKRMAEDLTE+L+E+ IRVRYMHS++ T+ERIEIIRDLRLG F
Sbjct: 484 EVRATAARGYRTLITVLTKRMAEDLTEFLHEQGIRVRYMHSDIDTIERIEIIRDLRLGAF 543

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           D LVGINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +
Sbjct: 544 DALVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQM 603

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA--- 750
           T S+Q +IDET RRREKQ+E+N  H I P+SVK+ I ++++ +   D     I       
Sbjct: 604 TGSMQRSIDETNRRREKQIEYNTAHGITPESVKKSIGDILNSVYERDHVLVEIGDGKGAG 663

Query: 751 --QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
                ++     +A L  L  +M  AA +LNFEEAAR+RDE+KRL+++     +DD
Sbjct: 664 FTDDAAVIGHNFEAVLADLETRMREAAADLNFEEAARLRDEVKRLRATE-LAVIDD 718


>gi|182677288|ref|YP_001831434.1| excinuclease ABC, B subunit [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182633171|gb|ACB93945.1| excinuclease ABC, B subunit [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 884

 Score =  895 bits (2313), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/744 (60%), Positives = 555/744 (74%), Gaps = 2/744 (0%)

Query: 52  EAGKHRKNAAKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQ 111
           E G+    A  R   H             +     +  +         + + ++L  L+ 
Sbjct: 60  EHGEPSGFAEARAAFHFDVEPLEMEAPARRRGGRGTAAKPAFSELTGASATAESLQDLLA 119

Query: 112 SDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ 171
             +P L+    W PHR    +        F++ +DY P GDQP AI +L+ GI ++E+ Q
Sbjct: 120 RGDPNLRERPPWQPHRPPRPDKSEGGHA-FEIVSDYTPQGDQPQAIDELVTGIKAQERDQ 178

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           +LLGVTGSGKTFTMA+VI    RPA+++APNK LAAQLY EFK+FFP+NAVEYFVSYYDY
Sbjct: 179 VLLGVTGSGKTFTMAQVIARTNRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSYYDY 238

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           YQPEAYVPR+DTYIEKESSINEQIDRMRH+ATR+LLER+D I+V+SVSCIYGIGSVE+Y+
Sbjct: 239 YQPEAYVPRSDTYIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYT 298

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
            M   LK G+ ++Q++L+  LV  QYKR      RG FRV GD++E+FP+H ED AWR+ 
Sbjct: 299 AMTFTLKRGERIDQRQLIGDLVALQYKRSAGDFSRGVFRVRGDTLELFPAHYEDRAWRIG 358

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            FG++IE I EF PLTG+K++++E +K+YANSHYVTPRPTL  ++K IK+ELK RL EL 
Sbjct: 359 FFGDEIESIVEFDPLTGKKVQDLEFVKVYANSHYVTPRPTLLQSIKGIKQELKQRLDELN 418

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             GRLLEAQRLEQR  +DLEMLE TGSC  IENYSRYLTGR PGEPPPTLFEY+P+++L+
Sbjct: 419 AAGRLLEAQRLEQRTVFDLEMLEATGSCAGIENYSRYLTGRRPGEPPPTLFEYLPDNALV 478

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           F DESHVT+PQI  MYRGDF RKATLAEYGFRLPSC+DNRPLRFEEW  +RP T+ VSAT
Sbjct: 479 FTDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCLDNRPLRFEEWEAMRPQTVHVSAT 538

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
           PGSWE+EQ  G+ VEQ+IRPTGL+DPPVE+  AR+QV+D+ DE+    +QG R L+TVLT
Sbjct: 539 PGSWEMEQTGGVFVEQVIRPTGLIDPPVEVHPARSQVDDLLDELRQVTRQGYRSLVTVLT 598

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           KRMAEDLTEYL+E  IRVRYMHS++ T+ERIEIIRDLRLG FDVL+GINLLREGLDIPEC
Sbjct: 599 KRMAEDLTEYLHEAGIRVRYMHSDIDTIERIEIIRDLRLGAFDVLIGINLLREGLDIPEC 658

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
           G VAILDADKEGFLRS+TSL+QTIGRAARNV  KVILYAD  T S+Q A+ ETTRRREKQ
Sbjct: 659 GFVAILDADKEGFLRSETSLVQTIGRAARNVEGKVILYADHETGSMQRAMAETTRRREKQ 718

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771
             +N++H I P ++K  I +++  +  +D  + +  + AQ         K  +  L K+M
Sbjct: 719 EAYNREHGITPATIKRGIHDILGSVYEQDHVSVDAGL-AQADLKPGHNFKMTIADLEKRM 777

Query: 772 HLAADNLNFEEAARIRDEIKRLKS 795
             AA NL FE AAR RDE++RL++
Sbjct: 778 REAAANLEFEAAARYRDELQRLQA 801


>gi|94498506|ref|ZP_01305062.1| excinuclease ABC subunit B [Sphingomonas sp. SKA58]
 gi|94422049|gb|EAT07094.1| excinuclease ABC subunit B [Sphingomonas sp. SKA58]
          Length = 757

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 436/704 (61%), Positives = 543/704 (77%), Gaps = 2/704 (0%)

Query: 101 PSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQL 160
           P   A+   I++D    + G+ + PHR             F + +DY PSGDQP AIA+L
Sbjct: 26  PYQGAMTIQIRTDLSEPETGQSFVPHRPARPEKSEGG-RPFTLVSDYEPSGDQPTAIAEL 84

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           +      EK Q+LLGVTGSGKTFTMAK IEA+QRPA+++APNKILAAQLY EFK+FFP N
Sbjct: 85  VAAARQGEKDQVLLGVTGSGKTFTMAKTIEALQRPALILAPNKILAAQLYGEFKSFFPDN 144

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
           AVEYFVSYYDYYQPEAYVPR+DTYIEKESS+NE IDRMRHSATR+LLER+D I+V+SVSC
Sbjct: 145 AVEYFVSYYDYYQPEAYVPRSDTYIEKESSVNESIDRMRHSATRALLERDDVIIVASVSC 204

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           +YGIGSVE+YS M   +K G   +Q+E++  LV  QYKR D G  RG FRV GD++E+FP
Sbjct: 205 LYGIGSVETYSAMTFSMKKGGVEDQREIIRKLVALQYKRNDAGFARGNFRVKGDNLEVFP 264

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
           SH ED AWRVS FGN+IE+I EF PLTG+KI +++ +K++ NSH+VTP PTL  AM+ I+
Sbjct: 265 SHYEDTAWRVSFFGNEIEDIVEFDPLTGKKIASLDYVKVFPNSHHVTPGPTLKQAMEAIR 324

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
            EL  RL EL  EG+LLEAQRLEQR  +DLEM+  TGSC  IENYSR+LTGR PGEPPPT
Sbjct: 325 FELAERLKELVAEGKLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPT 384

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           LFEY+PE+++LFVDESH T+PQI  M RGD  RK TLAEYGFRLPSC+DNRPLRF EW+ 
Sbjct: 385 LFEYLPENAVLFVDESHQTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDA 444

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           +RP T+ VSATPG+WE+EQ  G+  EQ+IRPTGL+DPPVEI+    QV+D+ +E    A 
Sbjct: 445 MRPQTVSVSATPGTWEMEQTGGVFSEQVIRPTGLIDPPVEIKPVEDQVDDLINECRKVAA 504

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           QG R L+T LTKRMAEDLTE+++E  I+VRYMHS+V+TLERIE+IRDLRLG +DVL+GIN
Sbjct: 505 QGYRTLVTTLTKRMAEDLTEFMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLIGIN 564

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           LLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARNV  +VILYAD IT S++ A
Sbjct: 565 LLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVEGRVILYADRITGSMERA 624

Query: 701 IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG 760
           ++ET+RRREKQ  +N +H I P ++K +I ++I  +  +D  T +  +D  +  +     
Sbjct: 625 LNETSRRREKQQAYNLEHGITPTTIKRQIGDIIAHVASKDQVTVDTGLD-DRPHMVGHNL 683

Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
           +A+++ L K+M  AA +L FEEA RIRDEI++L++       D+
Sbjct: 684 RAYIEDLEKKMRAAAADLEFEEAGRIRDEIRKLEAEELGLPADE 727


>gi|312116115|ref|YP_004013711.1| excinuclease ABC subunit B [Rhodomicrobium vannielii ATCC 17100]
 gi|311221244|gb|ADP72612.1| excinuclease ABC, B subunit [Rhodomicrobium vannielii ATCC 17100]
          Length = 976

 Score =  887 bits (2291), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/775 (57%), Positives = 571/775 (73%), Gaps = 25/775 (3%)

Query: 53  AGKHRKNAAKRMLIHQRENTASKGEFQSQS-----------SISMSEKQT-------REI 94
           A K     AK          ++K    +              ++ S + T       R +
Sbjct: 6   AAKPTARKAKPASKPTSAPRSAKTRATASGFSEAPQADFDQDVAYSSESTAHLIPALRNL 65

Query: 95  SEQTMTPSVQALARLIQ--SDNPLL--KNGKIWTPHRSWSINNHSKDITFFQMQTDYHPS 150
                 P    +   +    D+PLL  +N  ++ PHR             F +++D+ P 
Sbjct: 66  KPTGAMPLPSHMQGKLPPIGDHPLLTGENMPMFMPHRPPRPEKSEGG-KPFIIKSDFEPC 124

Query: 151 GDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLY 210
           GDQPAAI +L++G+   E+ Q+LLGVTGSGKTFTMAKVIE  QRPA+++APNK LAAQLY
Sbjct: 125 GDQPAAIRELVEGVTKLEREQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKTLAAQLY 184

Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270
            EFK+FFP NAVEYFVSYYDYYQPEAY+PR+DTYIEK+SSINEQIDRMRH+ATR+LLER+
Sbjct: 185 GEFKSFFPDNAVEYFVSYYDYYQPEAYIPRSDTYIEKDSSINEQIDRMRHAATRALLERD 244

Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
           D I+V+SVSCIYGIGSVE+YS M   +++GD ++Q+++L+ LV  QYKR +I   RG FR
Sbjct: 245 DVIIVASVSCIYGIGSVETYSAMTFTIQVGDRLQQRQILADLVAIQYKRNNISFARGDFR 304

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V GD+IEIFP+H ED AWR+SMFG+++E I+EF PLTG+K +++  +KIYANSHYVTP+P
Sbjct: 305 VRGDTIEIFPAHQEDRAWRISMFGDEVESIAEFDPLTGEKTQDLALVKIYANSHYVTPKP 364

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
           TL+ A++ +++EL+ +L      GRLLEAQRLEQR  +D+EM+E TGSC  IENYSR+LT
Sbjct: 365 TLHQAIRGMQQELQEQLQRFNATGRLLEAQRLEQRTQFDIEMIEATGSCNGIENYSRWLT 424

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
           GR PGEPPPTLFEY+P+++L+F DESHVT+PQI GM++GDF RK+TLAE+GFRLPSC+DN
Sbjct: 425 GRAPGEPPPTLFEYLPDNALVFADESHVTVPQIGGMFKGDFRRKSTLAEFGFRLPSCIDN 484

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
           RPLRFEEW+ +RP T  VSATPG WE+EQ  G+ VEQ+IRPTGL+DPPVEIR  +TQV+D
Sbjct: 485 RPLRFEEWDAMRPQTTFVSATPGKWEMEQTGGVFVEQVIRPTGLIDPPVEIRPVKTQVDD 544

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + DE      QG R+L+T LTKRM+EDLTEY +E+ ++VRYMHS+V TLERIEIIRDLRL
Sbjct: 545 LIDECRKTIAQGYRVLVTTLTKRMSEDLTEYAHEQGLKVRYMHSDVDTLERIEIIRDLRL 604

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYA
Sbjct: 605 GAFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYA 664

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS-ID 749
           D IT S++ AI ET RRREKQ+E+N +H I PQSV++ I +++  +   D  T +    +
Sbjct: 665 DNITGSMERAIAETNRRREKQVEYNTEHGITPQSVRKNIGDILASVYERDHVTVDAGFAE 724

Query: 750 AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
             Q  L     +A + +L K+M  AA NL FEEAAR+RDE+KRL+       +DD
Sbjct: 725 GAQTPLVGHNLQAVIANLEKRMREAASNLEFEEAARLRDEVKRLRD-VEMTIMDD 778


>gi|154252735|ref|YP_001413559.1| excinuclease ABC subunit B [Parvibaculum lavamentivorans DS-1]
 gi|154156685|gb|ABS63902.1| excinuclease ABC, B subunit [Parvibaculum lavamentivorans DS-1]
          Length = 771

 Score =  881 bits (2277), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/726 (59%), Positives = 551/726 (75%), Gaps = 6/726 (0%)

Query: 73  ASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSIN 132
            S         +  +E     + +       +  A  +Q D     N  ++ PHR     
Sbjct: 11  RSSERPLPNGGVGFAEAPASFMRDSLAALDRETWAGALQGD---PANWPLFEPHRPERPE 67

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
                     + ++Y P+GDQP AIA+L++ ++  E+ Q+LLGVTGSGKT+TMA+VIE  
Sbjct: 68  KSEGGRRL-NLVSEYQPAGDQPTAIAELVEAVNKGERDQVLLGVTGSGKTYTMAQVIERT 126

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRPA+++APNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN
Sbjct: 127 QRPALILAPNKTLAAQLYGEFKSFFPENAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 186

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           EQIDRMRHSATR+LLER+D ++V+SVSCIYGIGSVE+YS M   +K+G+ +++K+L++ L
Sbjct: 187 EQIDRMRHSATRALLERDDVVIVASVSCIYGIGSVETYSAMTFSVKVGERLDRKQLIADL 246

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR D    RGTFRV GD++E+FP+H ED AWR+ MFG++IEEISEF PLTG K  
Sbjct: 247 VALQYKRNDQAFGRGTFRVRGDTVEVFPAHYEDRAWRIGMFGDEIEEISEFDPLTGHKTD 306

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
               +K+YANSHYVTPRP L+ A++ IK +L++RL EL+ +G+LLEAQRLEQR  +D+EM
Sbjct: 307 KFTEVKLYANSHYVTPRPALSQAIEEIKHDLQVRLQELKGQGKLLEAQRLEQRTQFDIEM 366

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           +E TGSC  IENYSRYLTGR PGEPPPTLFEY+P+++L+F DESHVTIPQI GM+RGD+ 
Sbjct: 367 MEATGSCAGIENYSRYLTGRKPGEPPPTLFEYLPDNALVFADESHVTIPQIGGMFRGDYK 426

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK+TLAEYGFRLPSC+DNRP+RFEEWN +RP ++ VSATPG WE++Q  G+  EQ+IRPT
Sbjct: 427 RKSTLAEYGFRLPSCVDNRPMRFEEWNAMRPQSVFVSATPGPWEMDQTGGVFTEQVIRPT 486

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DPP  IR   TQV+D+  E +  A +G R+L+T LTKRMAEDLTEY++E+ IRVRYM
Sbjct: 487 GLIDPPTIIRPVATQVDDLIAECHEVAAKGQRVLVTTLTKRMAEDLTEYMHEQGIRVRYM 546

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+++TLERIEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLI
Sbjct: 547 HSDIETLERIEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLI 606

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+ +VILYAD IT S++ AI ET RRREKQ  +N++H I P+S++  I ++
Sbjct: 607 QTIGRAARNVDGRVILYADKITGSMERAIAETNRRREKQKAYNEEHGITPESIRRNIGDI 666

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           ++ +   D     +       +      +AH+  L ++M  AA +L FE AAR+RDEIKR
Sbjct: 667 LESVYERDH--VRVDTGEADEAFIGHNLRAHIADLERKMKDAAADLEFETAARLRDEIKR 724

Query: 793 LKSSPY 798
           L+++  
Sbjct: 725 LEATEL 730


>gi|85374647|ref|YP_458709.1| excinuclease ABC subunit B [Erythrobacter litoralis HTCC2594]
 gi|84787730|gb|ABC63912.1| excinuclease ABC subunit B [Erythrobacter litoralis HTCC2594]
          Length = 727

 Score =  879 bits (2270), Expect = 0.0,   Method: Composition-based stats.
 Identities = 443/696 (63%), Positives = 549/696 (78%), Gaps = 4/696 (0%)

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169
           I+      + G+ +TPHR             F++ ++Y P+GDQP AIA+L++     EK
Sbjct: 6   IRRGLDEPETGEEFTPHRPARPEKSMPG-KRFELVSEYEPAGDQPTAIAELVESAREGEK 64

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
            Q LLGVTGSGKTFTMAKVIE +QRPA+V+APNKILAAQLY EFK+FFPHNAVEYFVSYY
Sbjct: 65  TQTLLGVTGSGKTFTMAKVIETLQRPALVLAPNKILAAQLYGEFKSFFPHNAVEYFVSYY 124

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
           DYYQPEAYVPR+DTYIEKESS+NE IDRMRHSATR+LLER+D I+V+SVSC+YGIGSVE+
Sbjct: 125 DYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVIIVASVSCLYGIGSVET 184

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           YS MI  +K  ++V+Q+EL+  LV  QYKR D    RGTFRV GD++EIFPSH ED AWR
Sbjct: 185 YSAMIFDIKKDETVDQRELIRKLVALQYKRNDAAFQRGTFRVRGDNLEIFPSHYEDRAWR 244

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           VS FG+DIEEI+EF PLTG+K  +++++++YANSHYVTP PT+  A + IK EL+ RL E
Sbjct: 245 VSFFGDDIEEINEFDPLTGEKGASLDSVRVYANSHYVTPGPTMKQASEAIKFELQERLKE 304

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
           L  EGRLLEAQRLEQR  +DLEM+  TGSC  IENYSR+LTGR PGEPPPTLFEY+PE++
Sbjct: 305 LHAEGRLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLPENA 364

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVDESH T+PQI  M RGD  RK TLAEYGFRLPSC+DNRPLRF EW+ +RP T  VS
Sbjct: 365 LLFVDESHQTVPQIGAMARGDHRRKLTLAEYGFRLPSCIDNRPLRFNEWDAMRPQTFCVS 424

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
           ATPG+WE+EQ  G+  EQ+IRPTGL+DPPVEIR    QV+D  +E N  A++G R L+T 
Sbjct: 425 ATPGNWEMEQTGGVFAEQVIRPTGLIDPPVEIRPVEDQVQDCINECNETAKKGYRTLVTT 484

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           LTKRMAEDLTE+++E  ++VRYMHS+V+TLERIE+IRDLRLG +DVL+GINLLREGLDIP
Sbjct: 485 LTKRMAEDLTEFMHEAGVKVRYMHSDVETLERIELIRDLRLGVYDVLIGINLLREGLDIP 544

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           ECGLV ILDADKEGFLRS+TSL+QTIGRAARNV+ KVILYAD IT S++ A+ ET RRRE
Sbjct: 545 ECGLVCILDADKEGFLRSETSLVQTIGRAARNVDGKVILYADRITGSMERAMAETERRRE 604

Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRK 769
           KQ  +N++H I PQ++K +I +++     +D  T + + D ++ +L     +A+++ L K
Sbjct: 605 KQRAYNEEHGITPQTIKRQIADIVAHTASQDGVTVD-TGDDERNNLVGHNLRAYIEDLEK 663

Query: 770 QMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           +M  AA +L FEEA R+RDEI+RL++     GL DS
Sbjct: 664 RMREAAADLEFEEAGRLRDEIRRLENDEL--GLSDS 697


>gi|296134221|ref|YP_003641468.1| excinuclease ABC, B subunit [Thermincola sp. JR]
 gi|296032799|gb|ADG83567.1| excinuclease ABC, B subunit [Thermincola potens JR]
          Length = 676

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/657 (55%), Positives = 478/657 (72%), Gaps = 1/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI ++++GI++  + Q LLGVTGSGKTFTMA VI  + +P +V+A
Sbjct: 3   FKLVSEYKPKGDQPKAIREIVEGINAGLRHQTLLGVTGSGKTFTMANVIAQVNKPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SINE+ID++RH
Sbjct: 63  HNKTLAAQLCSEFKEFFPENAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINEEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y  ++V ++ G ++++  LL  LV  QY+R 
Sbjct: 123 SATAALFERRDVIIVASVSCIYGLGSPEDYKNLVVSIRRGSAMDRDRLLRRLVDIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  IRG FRV GD +EIFP+   + A R+  FG++I+ I E   LTG+ +     I IY
Sbjct: 183 DINFIRGKFRVRGDVVEIFPASYTERAVRIEFFGDEIDRIVEIDTLTGEILGERNHISIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T +  L  A++ I+ EL+ RL EL  +G+LLEAQRLEQR  +D+EM+   G C 
Sbjct: 243 PASHFATSQENLERAIRDIEAELEQRLNELRSQGKLLEAQRLEQRTNFDIEMMREMGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++TGR PGEPP TL +Y P+D L+ +DESHVT+PQI GMY GD  RK+ L E+
Sbjct: 303 GIENYSRHITGRAPGEPPYTLLDYFPDDFLMIIDESHVTVPQIGGMYEGDRSRKSALIEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F E+       + VSATPG +E E     +VEQIIRPTGLVDP ++
Sbjct: 363 GFRLPSAYDNRPLTFGEFEKHINQVVYVSATPGPYEQEHS-ARVVEQIIRPTGLVDPEIQ 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI+   ++  R+L+T LTK+MAEDLT+YL E  I+VRY+HS++KTLE
Sbjct: 422 VRPTKGQIDDLLTEIHARLEKNERVLITTLTKKMAEDLTDYLKEVGIKVRYLHSDIKTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS+ SLIQTIGRAAR
Sbjct: 482 RMEILRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  KVI+YADTIT+S++ AIDET RRR+ Q+++NK HNI PQ+VK+ + +VI+  +   
Sbjct: 542 NVEGKVIMYADTITQSMKKAIDETNRRRKIQMDYNKAHNITPQTVKKAVRDVIEATIKVA 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             T           +SKK  +  +  + K+M  AA  L FE+AA +RD +  L+   
Sbjct: 602 EPTEKYVAGRNTAKMSKKDLRKLITQIEKEMQTAARRLEFEKAAELRDLLIELRGEL 658


>gi|307295050|ref|ZP_07574892.1| excinuclease ABC, B subunit [Sphingobium chlorophenolicum L-1]
 gi|306879524|gb|EFN10742.1| excinuclease ABC, B subunit [Sphingobium chlorophenolicum L-1]
          Length = 727

 Score =  876 bits (2264), Expect = 0.0,   Method: Composition-based stats.
 Identities = 437/694 (62%), Positives = 542/694 (78%), Gaps = 2/694 (0%)

Query: 106 LARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH 165
           ++  I++     K G+ + PHR             F++ +DY PSGDQP AIA+L++   
Sbjct: 1   MSIQIRTTLEEPKTGEAFVPHRPARPEKSEGG-RAFKLVSDYEPSGDQPTAIAELVETAL 59

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           + EK Q+LLGVTGSGKTFTMAKVIEA+QRPA+V+APNKILAAQLY EFK+FFP NAVEYF
Sbjct: 60  TGEKDQVLLGVTGSGKTFTMAKVIEALQRPALVLAPNKILAAQLYGEFKSFFPENAVEYF 119

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
           VSYYDYYQPEAYV R+DTYIEKESS+NE IDRMRHSATR+LLER+D ++V+SVSC+YGIG
Sbjct: 120 VSYYDYYQPEAYVARSDTYIEKESSVNEAIDRMRHSATRALLERDDVLIVASVSCLYGIG 179

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           SVE+YS M   +K G   +Q+E++  LV  QYKR D    RG FRV GD++EIFPSH ED
Sbjct: 180 SVETYSAMTFSMKKGQVEDQREIIRKLVALQYKRNDAAFARGNFRVKGDNLEIFPSHYED 239

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
            AWRVS FGN+IEEI EF PLTG+KI +++ +K++ NSH+VTP PTL  AM+ I+ EL  
Sbjct: 240 TAWRVSFFGNEIEEIVEFDPLTGKKIASLDYVKVFPNSHHVTPGPTLKQAMEAIRFELAE 299

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           RL EL  EG+LLEAQRLEQR  +DLEM+  TGSC  IENYSR+LTGR PGEPPPTLFEY+
Sbjct: 300 RLKELTAEGKLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYL 359

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
           PE++LLFVDESH T+PQI  M RGD  RK TLAEYGFRLPSC+DNRPLRF EW+ +RP T
Sbjct: 360 PENALLFVDESHQTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQT 419

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
           + VSATPG WE+EQ  G+  EQ+IRPTGL+DPPVEI+    QV+D+ +E    A QG R 
Sbjct: 420 VSVSATPGPWEMEQTGGVFSEQVIRPTGLIDPPVEIKPVEDQVDDLINECRKVAAQGYRT 479

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+T LTKRMAEDLTE+++E  I+VRYMHS+V+TLERIE+IRDLRLG +DVL+GINLLREG
Sbjct: 480 LVTTLTKRMAEDLTEFMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLIGINLLREG 539

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD +T S++ A++ET+
Sbjct: 540 LDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRVTGSMERALNETS 599

Query: 706 RRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
           RRREKQ+E+N  H I PQ+VK+ I ++I  +  +D  T    ++  +  L     +A+++
Sbjct: 600 RRREKQMEYNAAHGITPQTVKKNIGDIIAHVASKDQVTVETGLE-DRPHLVGHNLRAYIE 658

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
            L K+M  AA +L FEEA RIRDEI++L++    
Sbjct: 659 DLEKKMRAAAADLEFEEAGRIRDEIRKLEAEELG 692


>gi|326389761|ref|ZP_08211326.1| excinuclease ABC, B subunit [Thermoanaerobacter ethanolicus JW 200]
 gi|325994243|gb|EGD52670.1| excinuclease ABC, B subunit [Thermoanaerobacter ethanolicus JW 200]
          Length = 661

 Score =  875 bits (2261), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/660 (54%), Positives = 482/660 (73%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ +++ P+GDQP AI +L++G+    + Q LLGVTGSGKTFTMA +I+ + RP +
Sbjct: 1   MSGFKLVSNFKPTGDQPQAIEKLVEGVKKGYRFQTLLGVTGSGKTFTMANIIQKLNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SINE+ID+
Sbjct: 61  VIAHNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G    Y  +++ L+ G   ++ E++  LV  QY
Sbjct: 121 LRHSATAALFERRDVIIVASVSCIYGLGDPVDYENLMLSLRPGMIKDRDEIIKKLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RG FRV GD IEIFP+   + A RV +FG++I+ I+E   LTG+ +   + +
Sbjct: 181 ERNDVNFTRGKFRVRGDVIEIFPASFSNKAIRVELFGDEIDRIAEIDVLTGEVLGLRKHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHY T +  L  A+K I+EEL+ R  EL+  G+++EA+RL+QR  YDLEML+  G
Sbjct: 241 AIFPASHYATSKDKLERAIKSIREELEQRYKELKDAGKIVEAERLKQRTNYDLEMLQEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+++GR PG PP TL +Y P+D L+F+DESHVTIPQI GMY GD  RK  L
Sbjct: 301 YCQGIENYSRHISGRPPGSPPYTLLDYFPKDFLIFIDESHVTIPQIRGMYNGDRSRKEAL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL FEE+       I VSATPG +E+E  +  +VEQ+IRPTGLVDP
Sbjct: 361 VEYGFRLPSAFDNRPLTFEEFEERINQVIFVSATPGPYEIEHSEQ-VVEQLIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V ++  + QV+D+  EI     +G R+L+T LTK+MAEDLT+YL +  I+V+Y+HS+++
Sbjct: 420 EVIVKPVKGQVDDLIGEIRKTVDKGFRVLVTTLTKKMAEDLTDYLKDMGIKVKYLHSDIE 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLGKFDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VI+YADT+T S++ AIDET RRR+ Q+E+NKKH I P++V + + +VI+   
Sbjct: 540 AARNAEGRVIMYADTVTNSMKRAIDETNRRRKIQMEYNKKHGITPKTVIKGVRDVIEATH 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + +          +      +  K+ ++ L K+M  AA  L FE+AA++RD I  LK   
Sbjct: 600 VAEEEQKYTRKKVKTY--DPEIIKSTIEQLEKEMKEAAIELQFEKAAKLRDVIFELKKQL 657


>gi|167036991|ref|YP_001664569.1| excinuclease ABC subunit B [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|167039702|ref|YP_001662687.1| excinuclease ABC subunit B [Thermoanaerobacter sp. X514]
 gi|300915049|ref|ZP_07132364.1| excinuclease ABC, B subunit [Thermoanaerobacter sp. X561]
 gi|307724972|ref|YP_003904723.1| excinuclease ABC subunit B [Thermoanaerobacter sp. X513]
 gi|320115409|ref|YP_004185568.1| excinuclease ABC subunit B [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166853942|gb|ABY92351.1| excinuclease ABC, B subunit [Thermoanaerobacter sp. X514]
 gi|166855825|gb|ABY94233.1| excinuclease ABC, B subunit [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|300888773|gb|EFK83920.1| excinuclease ABC, B subunit [Thermoanaerobacter sp. X561]
 gi|307582033|gb|ADN55432.1| excinuclease ABC, B subunit [Thermoanaerobacter sp. X513]
 gi|319928500|gb|ADV79185.1| excinuclease ABC, B subunit [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 661

 Score =  875 bits (2260), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/660 (54%), Positives = 481/660 (72%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ +++ P+GDQP AI +L++G+    + Q LLGVTGSGKTFTMA +I+ + RP +
Sbjct: 1   MSGFKLVSNFKPTGDQPQAIDKLVEGVKKGYRFQTLLGVTGSGKTFTMANIIQKLNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SINE+ID+
Sbjct: 61  VIAHNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G    Y  +++ L+ G   ++ E++  LV  QY
Sbjct: 121 LRHSATAALFERRDVIIVASVSCIYGLGDPVDYENLMLSLRPGMIKDRDEIIKKLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RG FRV GD IEIFP+   + A RV +FG++I+ I+E   LTG+ +   + +
Sbjct: 181 ERNDVNFTRGKFRVRGDVIEIFPASFSNKAIRVELFGDEIDRIAEIDVLTGEVLGLRKHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHY T +  L  A+K I+EEL+ R  EL+  G+++EA+RL QR  YDLEML+  G
Sbjct: 241 AIFPASHYATSKDKLERAIKSIREELEQRYKELKDAGKIVEAERLRQRTNYDLEMLQEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+++GR PG PP TL +Y P+D L+F+DESHVTIPQI GMY GD  RK  L
Sbjct: 301 YCQGIENYSRHISGRPPGSPPYTLLDYFPKDFLIFIDESHVTIPQIRGMYNGDRSRKEAL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL FEE+       I VSATPG +ELE  +  +VEQ+IRPTGL+DP
Sbjct: 361 VEYGFRLPSAFDNRPLTFEEFEKRINQVIFVSATPGPYELEHSEQ-VVEQLIRPTGLIDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V ++  + QV+D+  EI     +G R+L+T LTK+MAEDLT+YL +  I+V+Y+HS+++
Sbjct: 420 EVIVKPVKGQVDDLIGEIRKTVDKGFRVLVTTLTKKMAEDLTDYLKDMGIKVKYLHSDIE 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLGKFDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VI+YADT+T S++ AIDET RRR+ Q+E+NKKH I P++V + + +VI+   
Sbjct: 540 AARNAEGRVIMYADTVTNSMKRAIDETNRRRKIQMEYNKKHGITPKTVIKGVRDVIEATH 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + +          +      +  K+ ++ L K+M  AA  L FE+AA++RD I  LK   
Sbjct: 600 VAEEEQKYRRKKVKTY--DPEIIKSTIEQLEKEMKEAAIELQFEKAAKLRDVIFELKKQL 657


>gi|323705119|ref|ZP_08116695.1| excinuclease ABC, B subunit [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535545|gb|EGB25320.1| excinuclease ABC, B subunit [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 661

 Score =  875 bits (2260), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/658 (54%), Positives = 487/658 (74%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ +DY P+GDQP AI +L +G++   K Q LLGVTGSGKT+TMA +I+ + +P +
Sbjct: 1   MSEFKLVSDYKPTGDQPEAIRKLTEGVNIGLKCQTLLGVTGSGKTYTMANIIKNVNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +EFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK++SINE+ID+
Sbjct: 61  VIAHNKTLAAQLCAEFKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIEKDASINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G  E Y ++++ L+ G   ++ E+L  LV  QY
Sbjct: 121 LRHSATAALFERRDVIIVASVSCIYGLGDPEDYEELMLSLRPGMIKDRDEILKKLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI  +RG FRV GD IE+FP+   D A R+ +FG++I+ I+E   LTG+ I     +
Sbjct: 181 ERNDINFVRGKFRVRGDVIEVFPASSSDKAIRIELFGDEIDRITEIDVLTGEIIGERSHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHY T +  L  A++ I++EL+ R  EL+ +G++LEA+RL+QR  YD+EML+  G
Sbjct: 241 AIFPASHYATSKEKLKKAIESIEKELEERYKELKDQGKILEAERLKQRTNYDIEMLQEVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+++GR  G PP TL +Y P+D L+F+DESHVTIPQI GMY GD  RK +L
Sbjct: 301 YCSGIENYSRHISGRAAGSPPYTLLDYFPDDFLMFIDESHVTIPQIRGMYNGDRARKESL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+FEE+       I VSATPG +ELE  +  +VEQIIRPTGL+DP
Sbjct: 361 VDFGFRLPSAFDNRPLKFEEFEERINQLICVSATPGPYELEHSE-RVVEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V ++  + QV+D+  EI +  ++G R+L+T LTK+MAEDLT+Y  +  ++V+Y+HS+++
Sbjct: 420 EVVVKPVKGQVDDLLSEIKMTVEKGYRVLVTTLTKKMAEDLTDYFRDMGVKVKYLHSDIE 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLGKFDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMEIIRDLRLGKFDVLIGINLLREGLDLPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN + KVI+YAD +T+S++ AI+ET RRR  Q+E+NKKH I P+++ + I +VI+   
Sbjct: 540 AARNADGKVIMYADIVTESMKNAINETNRRRAIQMEYNKKHGITPKTIVKGIRDVIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + +   T     A+   + K   +  +  L K+M  AA +L FE+AA++RD I  L+ 
Sbjct: 600 VAEDKGTYKVKKAEV--IDKVSIEKMISELEKEMKKAAKDLEFEKAAKLRDRIFELQK 655


>gi|294013266|ref|YP_003546726.1| excinuclease ABC subunit B [Sphingobium japonicum UT26S]
 gi|292676596|dbj|BAI98114.1| excinuclease ABC subunit B [Sphingobium japonicum UT26S]
          Length = 727

 Score =  875 bits (2260), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/694 (62%), Positives = 540/694 (77%), Gaps = 2/694 (0%)

Query: 106 LARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH 165
           ++  I++     + G+ + PHR             F++ +DY PSGDQP AIA+L++   
Sbjct: 1   MSIQIRTTLDEPETGEGFVPHRPARPEKSEGG-RPFKLVSDYEPSGDQPTAIAELVETAL 59

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
             EK Q+LLGVTGSGKTFTMAKVIEA+QRPA+V+APNKILAAQLY EFK+FFP NAVEYF
Sbjct: 60  QGEKDQVLLGVTGSGKTFTMAKVIEALQRPALVLAPNKILAAQLYGEFKSFFPENAVEYF 119

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
           VSYYDYYQPEAYVPR+DTYIEKESS+NE IDRMRHSATR+LLER+D ++V+SVSC+YGIG
Sbjct: 120 VSYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVLIVASVSCLYGIG 179

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           SVE+YS M   +K G   +Q+E++  LV  QYKR D    RG FRV GD++EIFPSH ED
Sbjct: 180 SVETYSAMTFAMKKGQVEDQREIIRKLVALQYKRNDAAFARGNFRVKGDNLEIFPSHYED 239

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
            AWRVS FGN+IE+I EF PLTG+K+ +++ +K++ NSH+VTP PTL  AM+ I+ EL  
Sbjct: 240 TAWRVSFFGNEIEDIVEFDPLTGKKVASLDYVKVFPNSHHVTPGPTLKQAMEAIRFELAE 299

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           RL EL  EG+LLEAQRLEQR  +DLEM+  TGSC  IENYSR+LTGR PGEPPPTLFEY+
Sbjct: 300 RLKELTAEGKLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYL 359

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
           PE++LLFVDESH T+PQI  M RGD  RK TLAEYGFRLPSC+DNRPLRF EW+ +RP T
Sbjct: 360 PENALLFVDESHQTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQT 419

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
           + VSATPG WE+EQ  G   EQ+IRPTGL+DPPVEI+    QV+D+  E    A++G R 
Sbjct: 420 VSVSATPGPWEMEQTGGAFSEQVIRPTGLIDPPVEIKPVEDQVDDLIHEAKETAKKGYRT 479

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+T LTKRMAEDLTE+++E  I+VRYMHS+V+TLERIE+IRDLRLG +DVLVGINLLREG
Sbjct: 480 LVTTLTKRMAEDLTEFMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLVGINLLREG 539

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD IT S++ A++ET+
Sbjct: 540 LDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRITGSMERALNETS 599

Query: 706 RRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
           RRREKQ+ +N +H I P ++K  I ++I  +  +D  T +  ++  +  L     +A+++
Sbjct: 600 RRREKQMAYNLEHGITPTTIKRNIGDIIAHVASKDQVTVDTGLE-DRPHLVGHNLRAYIE 658

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
            L K+M  AA +L FEEA RIRDEI++L++    
Sbjct: 659 DLEKKMRAAAADLEFEEAGRIRDEIRKLEAEELG 692


>gi|87200793|ref|YP_498050.1| excinuclease ABC subunit B [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136474|gb|ABD27216.1| Excinuclease ABC subunit B [Novosphingobium aromaticivorans DSM
           12444]
          Length = 747

 Score =  874 bits (2259), Expect = 0.0,   Method: Composition-based stats.
 Identities = 431/709 (60%), Positives = 537/709 (75%), Gaps = 3/709 (0%)

Query: 92  REISEQTMTPSVQALARL-IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPS 150
             ++     P ++ +A L I+           + PHR    +        F++ +DY P+
Sbjct: 5   TSVARTLFVPHIRRMAELVIRRGLEEPDTSGTFVPHRPARPDKVEGG-KRFRIVSDYQPA 63

Query: 151 GDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLY 210
           GDQP AIA L++GI + +K Q+LLGVTGSGKTFTMA+VIEA QRPA+++APNKILAAQLY
Sbjct: 64  GDQPTAIADLVEGIRADDKTQVLLGVTGSGKTFTMAQVIEATQRPALILAPNKILAAQLY 123

Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270
            E K+FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESS+NE IDRMRHSATR+LLER+
Sbjct: 124 GEMKSFFPENAVEYFVSYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERD 183

Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
           D I+V+SVSC+YGIGSVE+YS MI  LK+G +V+  E++  LV  QYKR D    RG FR
Sbjct: 184 DVIIVASVSCLYGIGSVETYSAMIFDLKVGTTVDSGEIIRKLVALQYKRNDAAFSRGNFR 243

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V GD++EIFPSH EDVAWR+S FG++IE+I EF PLTG+    +  I++YANSHYVTP P
Sbjct: 244 VRGDNLEIFPSHYEDVAWRISFFGDEIEQIVEFDPLTGKAGTKLTAIRVYANSHYVTPGP 303

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
           T+  A   I+ EL  RL EL  EG+LLEAQRLEQR  +DLEM+  TGSC  IENYSR+LT
Sbjct: 304 TMKQAADAIRFELTERLKELVAEGKLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLT 363

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
           GR PGEPPPTLFEY+P+++LLFVDESH T+PQI  M RGD  RK TLAEYGFRLPSC+DN
Sbjct: 364 GRLPGEPPPTLFEYLPDNALLFVDESHQTVPQIGAMARGDHRRKLTLAEYGFRLPSCIDN 423

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
           RPLRF EW+ +RP T+ VSATPG WE+EQ  G+  EQ+IRPTGL+DPPV IR    QV+D
Sbjct: 424 RPLRFNEWDAMRPQTVAVSATPGGWEMEQAGGVFAEQVIRPTGLIDPPVLIRPVEDQVQD 483

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             +E    A +G R L+T LTKRMAEDLTE+++E  +RVRYMHS+V+TLERIE+IRDLRL
Sbjct: 484 CINECRETAAKGYRTLVTTLTKRMAEDLTEFMHEAGLRVRYMHSDVETLERIELIRDLRL 543

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G +DVLVGINLLREGLDIPECGLV ILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYA
Sbjct: 544 GVYDVLVGINLLREGLDIPECGLVCILDADKEGFLRSETSLIQTIGRAARNVDGRVILYA 603

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
           D +T S++ AI ET RRR KQ  +N++H I PQ++K  I +++      D    + + D 
Sbjct: 604 DRMTGSMERAIAETDRRRAKQQAYNEEHGITPQTIKRNIHDIVADTASRDGVVVD-TGDD 662

Query: 751 QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
           ++ +L     +A+++ L K+M  AA +L FEEA R+RDEI+RL+++   
Sbjct: 663 ERNNLVGHNLRAYIEDLEKRMRAAAADLEFEEAGRLRDEIRRLEATELG 711


>gi|307266010|ref|ZP_07547557.1| excinuclease ABC, B subunit [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918972|gb|EFN49199.1| excinuclease ABC, B subunit [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 661

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/660 (54%), Positives = 481/660 (72%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ +++ P+GDQP AI +L++G+    + Q LLGVTGSGKTFTMA +I+ + RP +
Sbjct: 1   MSGFKLVSNFKPTGDQPQAIEKLVEGVKKGYRFQTLLGVTGSGKTFTMANIIQKLNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SINE+ID+
Sbjct: 61  VIAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G    Y  +++ L+ G   ++ E++  LV  QY
Sbjct: 121 LRHSATAALFERRDVIIVASVSCIYGLGDPVDYENLMLSLRPGMIKDRDEIIKKLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RG FRV GD IEIFP+   + A RV +FG++I+ I+E   LTG+ +   + +
Sbjct: 181 ERNDVNFTRGKFRVRGDVIEIFPASFSNKAIRVELFGDEIDRIAEIDVLTGEVLGLRKHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHY T +  L  A+K I+EEL+ R  EL+  G+++EA+RL QR  YDLEML+  G
Sbjct: 241 AIFPASHYATSKDKLERAIKSIREELEQRYKELKDAGKIVEAERLRQRTNYDLEMLQEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+++GR PG PP TL +Y P+D L+F+DESHVTIPQI GMY GD  RK  L
Sbjct: 301 YCQGIENYSRHISGRPPGSPPYTLLDYFPKDFLIFIDESHVTIPQIRGMYNGDRSRKEAL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL FEE+       I VSATPG +E+E  +  +VEQ+IRPTGLVDP
Sbjct: 361 VEYGFRLPSAFDNRPLTFEEFEERINQVIFVSATPGPYEIEHSEQ-VVEQLIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V ++  + QV+D+  EI     +G R+L+T LTK+MAEDLT+YL +  I+V+Y+HS+++
Sbjct: 420 EVIVKPVKGQVDDLIGEIRKTVDKGFRVLVTTLTKKMAEDLTDYLKDMGIKVKYLHSDIE 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLGKFDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VI+YADT+T S++ AIDET RRR+ Q+E+NKKH I P++V + + +VI+   
Sbjct: 540 AARNAEGRVIMYADTVTNSMKRAIDETNRRRKIQMEYNKKHGITPKTVIKGVRDVIEATH 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + +          +      +  K+ ++ L K+M  AA  L FE+AA++RD I  LK   
Sbjct: 600 VAEEEQKYTRKKVKTY--DPEIIKSTIEQLEKEMKEAAIELQFEKAAKLRDVIFELKKQL 657


>gi|288958421|ref|YP_003448762.1| excinuclease ABC subunit B [Azospirillum sp. B510]
 gi|288910729|dbj|BAI72218.1| excinuclease ABC subunit B [Azospirillum sp. B510]
          Length = 713

 Score =  874 bits (2257), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/668 (62%), Positives = 520/668 (77%), Gaps = 1/668 (0%)

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
                   +    F + +D+ PSGDQP AIA+L  G+   EK Q+LLGVTGSGKTFTMA 
Sbjct: 10  PARPLAKLEAGKQFVISSDFKPSGDQPTAIAELTAGLGQGEKDQVLLGVTGSGKTFTMAH 69

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           VI+ +QRP +++APNK LAAQLY E K+FFP NAVEYFVSYYDYYQPEAYVPRTDTYIEK
Sbjct: 70  VIQTVQRPTLILAPNKTLAAQLYGEMKSFFPTNAVEYFVSYYDYYQPEAYVPRTDTYIEK 129

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           ESSINEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+YS+M V L+ G+ + Q E
Sbjct: 130 ESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYSEMTVDLRKGEVIAQPE 189

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           LL  L + QYKR D    RG FRV GD++E+FP+H+ED AWR+S+FG++IE I E  PLT
Sbjct: 190 LLRKLTELQYKRNDAAFGRGLFRVRGDTVELFPAHMEDRAWRISLFGDEIEGIHEIDPLT 249

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           G+K+  +E +++Y NSHYVTP+PTLN A+  IK++LK RL E   EG+LLEAQRLEQR T
Sbjct: 250 GEKLAALEAVRVYPNSHYVTPKPTLNQAISQIKKDLKERLEEFAAEGKLLEAQRLEQRTT 309

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           +D+EM+  TGSC  IENYSRYLTGR PGEPPPTLFEY+P ++LL VDESHV +PQI GMY
Sbjct: 310 FDIEMMAATGSCAGIENYSRYLTGRAPGEPPPTLFEYLPAEALLIVDESHVMVPQIGGMY 369

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
           RGD  RK+TL++YGFRLPS  DNRPL+FEEW  +RP T+ VSATPG WELE+  G   EQ
Sbjct: 370 RGDLMRKSTLSDYGFRLPSAKDNRPLKFEEWEGMRPQTVFVSATPGPWELERTGGAFTEQ 429

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           ++RPTGL+DPPV IR   TQV+D+  E      +G R+L+T LTK+MAE LTEY++E  +
Sbjct: 430 LVRPTGLIDPPVIIRPTETQVDDLIGECKEVVAKGYRVLVTTLTKKMAEALTEYMHEAGL 489

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RVRY+HS+V+TLERIEIIRDLRLG +DVLVGINLLREGLDIPEC LVAILDADKEG+LRS
Sbjct: 490 RVRYIHSDVETLERIEIIRDLRLGAYDVLVGINLLREGLDIPECALVAILDADKEGYLRS 549

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           +TSLIQTIGRAARN++ + ILYAD IT S++ AIDET RRREKQ+ +N +H I P+SVK+
Sbjct: 550 RTSLIQTIGRAARNIDGRAILYADKITDSMKYAIDETARRREKQMAYNLEHGITPESVKK 609

Query: 728 KIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
            I ++++ +  E      +     +  L     KA +  L K+M  AA +L FEEAAR+R
Sbjct: 610 AIGDILESVF-ERGDHVTVKTGLGKEELVGHNLKAVIADLEKRMRAAAADLEFEEAARLR 668

Query: 788 DEIKRLKS 795
           DE++RL++
Sbjct: 669 DELRRLEA 676


>gi|297545162|ref|YP_003677464.1| excinuclease ABC subunit B [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842937|gb|ADH61453.1| excinuclease ABC, B subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 661

 Score =  874 bits (2257), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/660 (54%), Positives = 482/660 (73%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ +++ P+GDQP AI +L++G+    + Q LLGVTGSGKTFTMA +I+ + RP +
Sbjct: 1   MSGFKLVSNFKPTGDQPQAIEKLVEGVKKGYRFQTLLGVTGSGKTFTMANIIQKLNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SINE+ID+
Sbjct: 61  VIAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G    Y  +++ L+ G   ++ E++  LV  QY
Sbjct: 121 LRHSATAALFERRDVIIVASVSCIYGLGDPIDYENLMLSLRPGMIKDRDEIIKKLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RG FRV GD IEIFP+   + A RV +FG++I+ I+E   LTG+ +   + +
Sbjct: 181 ERNDVNFTRGKFRVRGDVIEIFPASFSNKAIRVELFGDEIDRIAEIDVLTGEILGFRKHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHY T +  L  A+K I+EEL+ R  EL+  G+++EA+RL+QR  YDLEML+  G
Sbjct: 241 AIFPASHYATSKDKLERAIKSIREELEQRYKELKDAGKIVEAERLKQRTNYDLEMLQEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+++GR PG PP TL +Y P+D L+F+DESHVTIPQI GMY GD  RK  L
Sbjct: 301 YCQGIENYSRHISGRPPGSPPYTLLDYFPKDFLIFIDESHVTIPQIRGMYNGDRSRKEAL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL FEE+       I VSATPG +E+E  +  +VEQ+IRPTGLVDP
Sbjct: 361 VEYGFRLPSAFDNRPLTFEEFEERINQVIFVSATPGPYEIEHSEQ-VVEQLIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V ++  + QV+D+  EI     +G R+L+T LTK+MAEDLT+YL +  I+V+Y+HS+++
Sbjct: 420 EVIVKPVKGQVDDLIGEIRKTVDKGFRVLVTTLTKKMAEDLTDYLKDMGIKVKYLHSDIE 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLGKFDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VI+YADT+T S++ AIDET RRR+ Q+E+NKKH I P++V + + +VI+   
Sbjct: 540 AARNAEGRVIMYADTVTNSMKRAIDETNRRRKIQMEYNKKHGITPKTVIKGVRDVIEATH 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + +          +      +  K+ ++ L K+M  AA  L FE+AA++RD I  LK   
Sbjct: 600 VAEEEQKYTRKKVKTY--DPEIIKSTIEQLEKEMKEAAIELQFEKAAKLRDVIFELKKQL 657


>gi|289578950|ref|YP_003477577.1| excinuclease ABC subunit B [Thermoanaerobacter italicus Ab9]
 gi|289528663|gb|ADD03015.1| excinuclease ABC, B subunit [Thermoanaerobacter italicus Ab9]
          Length = 661

 Score =  873 bits (2255), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/660 (54%), Positives = 483/660 (73%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ +++ P+GDQP AI +L++G+    + Q LLGVTGSGKTFTMA +I+ + RP +
Sbjct: 1   MSGFKLVSNFKPTGDQPQAIEKLVEGVKKGYRFQTLLGVTGSGKTFTMANIIQKLNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SINE+ID+
Sbjct: 61  VIAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G    Y  +++ L+ G   ++ E++  LV  QY
Sbjct: 121 LRHSATAALFERRDVIIVASVSCIYGLGDPIDYENLMLSLRPGMIKDRDEIIKKLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RG FRV GD IEIFP+   + A RV +FG++I+ I+E   LTG+ +   + +
Sbjct: 181 ERNDVNFTRGKFRVRGDVIEIFPASFSNKAIRVELFGDEIDRIAEIDVLTGEILGFRKHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHY T +  L  A+K I+EEL+ R  EL+  G+++EA+RL+QR  YDLEML+  G
Sbjct: 241 AIFPASHYATSKDKLERAIKSIREELEQRYKELKDAGKIVEAERLKQRTNYDLEMLQEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+++GR PG PP TL +Y P+D L+F+DESHVTIPQI GMY GD  RK  L
Sbjct: 301 YCQGIENYSRHISGRPPGSPPYTLLDYFPKDFLIFIDESHVTIPQIRGMYNGDRSRKEAL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL FEE+       I VSATPG +E+E  +  +VEQ+IRPTGLVDP
Sbjct: 361 VEYGFRLPSAFDNRPLTFEEFEERINQVIFVSATPGPYEIEHSEQ-VVEQLIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R  + QV+D+  EI     +G R+L+T LTK+MAEDLT+YL +  I+V+Y+HS+++
Sbjct: 420 EVIVRPVKGQVDDLIGEIRKTVDKGFRVLVTTLTKKMAEDLTDYLKDMGIKVKYLHSDIE 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLGKFDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VI+YADT+T S++ AI+ET RRR+ Q+E+NKKH I P++V + + +VI+   
Sbjct: 540 AARNAEGRVIMYADTVTNSMKRAIEETNRRRKIQMEYNKKHGITPKTVIKGVRDVIEATH 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +  A         +  +   +  K+ ++ L K+M  AA  L FE+AA++RD I  LK   
Sbjct: 600 V--AEEEEKYKKKKVKTYDPEIIKSTIEQLEKEMKEAAIELQFEKAAKLRDVIFELKKQL 657


>gi|309781136|ref|ZP_07675873.1| excinuclease ABC subunit B [Ralstonia sp. 5_7_47FAA]
 gi|308919957|gb|EFP65617.1| excinuclease ABC subunit B [Ralstonia sp. 5_7_47FAA]
          Length = 724

 Score =  873 bits (2255), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/713 (53%), Positives = 500/713 (70%), Gaps = 6/713 (0%)

Query: 95  SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQP 154
           S Q +  ++      I     +    ++ +PH            + FQ+   Y P+GDQP
Sbjct: 9   SGQGVQVTLSTSRAAIPPA-AMTDLSQVPSPHDESKFVTFEG--SPFQLYQPYPPAGDQP 65

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            AI QL++ I      Q LLGVTGSGKTFTMA VI  + RPAIV APNK LAAQLYSEF+
Sbjct: 66  EAIRQLVENIEDGLSYQTLLGVTGSGKTFTMANVIAQVGRPAIVFAPNKTLAAQLYSEFR 125

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I++MR SAT+SLLER D ++
Sbjct: 126 EFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQMRLSATKSLLERRDVVI 185

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           V++VS IYGIG+   Y QMI+ L+ GD V Q+++++ L+  QY R +    RGTFRV GD
Sbjct: 186 VATVSAIYGIGNPSEYHQMILTLRAGDKVSQRDVIARLIAMQYTRNETDFQRGTFRVRGD 245

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
           +++IFP+   ++A R+ +F +++E +  F PLTG+  + +    +Y +SHYVTPR T+  
Sbjct: 246 TVDIFPAEHAEMAVRLELFDDEVESLQLFDPLTGRVRQKIPRFTVYPSSHYVTPRETVLR 305

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A++ IK EL+ RL    KE +L+EAQRLEQR  +DLEML+  G C+ IENYSR+L+G  P
Sbjct: 306 AIETIKAELRERLDFFYKENKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGSAP 365

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
           GEPPPTL +Y+P D+L+F+DESHV I Q++GMY GD  RK TLAEYGFRLPS +DNRPL+
Sbjct: 366 GEPPPTLVDYLPPDALMFLDESHVLIGQLNGMYNGDRARKETLAEYGFRLPSALDNRPLK 425

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           F E+         VSATPG +E +     +VEQ++RPTGLVDP +E+R A TQV+D+  E
Sbjct: 426 FAEFETKMRQVTFVSATPGDYEKKTAGTEVVEQVVRPTGLVDPIIEVRPATTQVDDLLSE 485

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I++  + G R+L+T LTKRMAE LTE+L E  ++VRY+HS++ T+ER+EIIRDLRLG FD
Sbjct: 486 IHVRVEAGERVLVTTLTKRMAEQLTEFLSENGVKVRYLHSDIDTVERVEIIRDLRLGTFD 545

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAARNVN   ILYAD +T
Sbjct: 546 VLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNVNGTAILYADRMT 605

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI---DAQ 751
            S++ AIDET RRR KQ+ HN+ H I P+ V ++I ++ID +   D A   +      A+
Sbjct: 606 DSMKKAIDETERRRAKQIAHNEAHGITPRGVVKRIKDIIDGVYNVDDARAELKAAQEAAK 665

Query: 752 QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
              +S+K+    +K L KQM   A NL FE+AA +RD++ +LKS  +    +D
Sbjct: 666 YEDMSEKQASKEIKRLEKQMLDHAKNLEFEKAAAVRDQLAKLKSQLFGASGED 718


>gi|167648209|ref|YP_001685872.1| excinuclease ABC subunit B [Caulobacter sp. K31]
 gi|167350639|gb|ABZ73374.1| excinuclease ABC, B subunit [Caulobacter sp. K31]
          Length = 761

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/719 (62%), Positives = 547/719 (76%), Gaps = 9/719 (1%)

Query: 84  ISMSEKQTREISEQTMTPSVQA--LARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFF 141
           ++ S K             V A  +          +    +W PHR             F
Sbjct: 1   MARSPKTDPSSDNGGGVSDVSAKFIHDATLEGELGMATPMLWQPHRPARPEKSEGG-RRF 59

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +DY P+GDQP AIA+L+ G+  +E  Q+LLGVTGSGKTFTMAKVIEA QRPA+++AP
Sbjct: 60  KLVSDYEPAGDQPTAIAELVAGLEGKENDQVLLGVTGSGKTFTMAKVIEATQRPALILAP 119

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK LAAQLYSEFK+FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRHS
Sbjct: 120 NKTLAAQLYSEFKSFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHS 179

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           ATR++LER+D IVV+SVSCIYGIGSVE+Y+ M   L++G ++ +K++++ LV QQYKR D
Sbjct: 180 ATRAILERDDVIVVASVSCIYGIGSVETYTAMTFTLEVGQTINEKQMMADLVAQQYKRND 239

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               RGTFR  GD+IEIFP+H ED AWR+S+FG+++E ISEF PLTG+K  ++ETIK+YA
Sbjct: 240 AAFERGTFRRRGDTIEIFPAHYEDRAWRISLFGDEVESISEFDPLTGKKTGDLETIKVYA 299

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
           NSH+VTPRPTL  A+  I++ELK RL  + + G+LLEAQRLEQR  +DLEM+ETTGSC  
Sbjct: 300 NSHHVTPRPTLRQAIISIRQELKERLAWMYENGKLLEAQRLEQRTNFDLEMIETTGSCAG 359

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSRYL+GR  GEPPPT FEYIP+++LLF DESH T+PQI  MY+GD  RK TLAEYG
Sbjct: 360 IENYSRYLSGRKAGEPPPTFFEYIPDNALLFTDESHQTVPQIGAMYKGDRSRKWTLAEYG 419

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPS +DNRPL+FEEW+ +RP ++ VSATP  WELE+  G+  EQ+IRPTGL+DPPVE+
Sbjct: 420 FRLPSALDNRPLKFEEWDAMRPQSVHVSATPAKWELERAGGVFAEQVIRPTGLIDPPVEV 479

Query: 562 RSAR----TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           R       +QV+DV DE+  A  +G R L+TVLTK+MAEDLTEY+ E+ I VRYMHS+V 
Sbjct: 480 RPVSKDGASQVDDVIDEVRQAKAKGYRTLVTVLTKKMAEDLTEYMNEQGIAVRYMHSDVD 539

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ERIEIIRDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 540 TMERIEIIRDLRLGHFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGR 599

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-PI 736
           AARNV+ KVILYAD IT S++ A+ ET+RRREKQ ++N +H I P+SVK  I ++++ P 
Sbjct: 600 AARNVDGKVILYADRITGSMERAMGETSRRREKQHQYNLEHGITPESVKRDIKDILNSPY 659

Query: 737 LLEDAATTNISIDAQ-QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              D  T  I   A+     S    KA LK +  +M  AA NL FE AAR+RDEIKR+K
Sbjct: 660 ERGDRVTVPIGGVAETGKPFSGDNFKAALKDMEARMREAAANLEFETAARLRDEIKRMK 718


>gi|20808375|ref|NP_623546.1| excinuclease ABC subunit B [Thermoanaerobacter tengcongensis MB4]
 gi|22257068|sp|Q8R8M4|UVRB_THETN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|20516986|gb|AAM25150.1| Helicase subunit of the DNA excision repair complex
           [Thermoanaerobacter tengcongensis MB4]
          Length = 662

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/660 (55%), Positives = 478/660 (72%), Gaps = 4/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +++ P+GDQP AI +L++G+    + Q LLGVTGSGKTFTMA +I  + RP +
Sbjct: 1   MGGFKLVSNFKPTGDQPQAIEKLVEGVRRGYRYQTLLGVTGSGKTFTMANIIARLNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK++SINE+ID+
Sbjct: 61  VIAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPETDTYIEKDASINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G    Y  +++ L+ G   ++ E++  LV+ QY
Sbjct: 121 LRHSATAALFERRDVIIVASVSCIYGLGDPIDYENLMLSLRPGMVKDRDEIIRKLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RG FRV GD IE+FP+   + A R+ +FG++I+ I+E   LTG+ +   + +
Sbjct: 181 ERNDINFTRGKFRVRGDVIEVFPASFSNKAIRIELFGDEIDRIAEIDVLTGEVLGYRKHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHY T R  L  A+K I+EEL+ R  EL++ G+++EA+RL QR  YDLEML+  G
Sbjct: 241 AIFPASHYATSRDKLERAIKSIREELEERYKELKEMGKIVEAERLWQRTNYDLEMLQEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSR+++GR PG PP TL +Y PED L+F+DESHVTIPQ+ GMY GD  RK  L
Sbjct: 301 YCKGIENYSRHISGRPPGSPPYTLLDYFPEDFLIFIDESHVTIPQLRGMYNGDRSRKEAL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL FEE+       I VSATPG +E+E  +  +VEQ+IRPTGLVDP
Sbjct: 361 VEYGFRLPSAYDNRPLTFEEFEQRVNQVIFVSATPGPYEMEHSEQ-VVEQLIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R  + QV+D+  EI     +G R+L+T LTK+MAEDL++YL E  IRVRY+HS+++
Sbjct: 420 EVIVRPVKGQVDDLIAEIRKTVAKGYRVLVTTLTKKMAEDLSDYLKEMGIRVRYLHSDIE 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLGKFDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VI+YADTIT S++ AIDET RRR+ Q+E+N+KH I P++V + + +VI    
Sbjct: 540 AARNAEGRVIMYADTITNSMRRAIDETNRRRKIQMEYNEKHGIVPKTVVKGVRDVIQATQ 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + +        +           K+ ++ L K+M  AA  L FE+AA++RD I  L+   
Sbjct: 600 VAEKEEKY---EKTANFYDPDVIKSTIEQLEKEMRQAAIELQFEKAAKLRDMILELRKQL 656


>gi|332982310|ref|YP_004463751.1| Excinuclease ABC subunit B [Mahella australiensis 50-1 BON]
 gi|332699988|gb|AEE96929.1| Excinuclease ABC subunit B [Mahella australiensis 50-1 BON]
          Length = 655

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/660 (55%), Positives = 485/660 (73%), Gaps = 5/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + ++Y P+GDQP AI +L  G+ +  K Q +LGVTGSGKTFTMA +I+ +Q+P +
Sbjct: 1   MAEFNLISEYKPTGDQPQAIEKLADGVKNGLKFQTMLGVTGSGKTFTMANIIQKVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL  EFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++ID+
Sbjct: 61  VIAHNKTLAAQLCGEFKEFFPNNAVEYFVSYYDYYQPEAYIPTTDTYIEKDSAINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSAT +LLER D IVV+SVSCIYG+G+   Y+ M+V L+ G   ++ E+L  L++ QY
Sbjct: 121 MRHSATSALLERRDVIVVASVSCIYGLGNPNEYASMVVSLRPGMERDRDEVLHRLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI  +RGTFRV GD +EIFP+   D A RV  FG++I+ I+E   +TG+    +  +
Sbjct: 181 ERNDIDFVRGTFRVHGDVVEIFPASSSDKAIRVEFFGDEIDRITEVDIVTGEITAELNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYVT + TL+ A++ I+ +L +R  E + + +LLEAQR+ QR  +D+EM+   G
Sbjct: 241 AIFPASHYVTSQDTLDRAIEQIERDLAIREAEFKAQNKLLEAQRIVQRTNFDIEMMREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSRY  GR PG+PP TL +Y P+D L+F+DESHVT+PQI GMY GD  RK TL
Sbjct: 301 YCQGIENYSRYFDGRQPGQPPYTLLDYFPDDFLIFIDESHVTLPQIRGMYAGDRSRKDTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP+  DNRPL FEE+       I VSATPG +E+E  Q  +VEQIIRPTGLVDP
Sbjct: 361 VEYGFRLPAAYDNRPLTFEEFEAHINQIIFVSATPGPYEMEHSQQ-VVEQIIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R  + Q++D+  EI    ++G R+L+T LTKRMAE+LT+YL E NI+VRYMHS+V 
Sbjct: 420 EVEVRPVQGQIDDLIAEIKKRVEKGQRVLVTTLTKRMAENLTDYLKELNIKVRYMHSDVA 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++IIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMQIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  KVI+YAD IT S++ AIDET RRR+ Q+E+N+KH I PQ++K+ I ++I+   
Sbjct: 540 AARNVEGKVIMYADNITGSMKRAIDETNRRRQLQIEYNQKHGITPQTIKKGIRDIIEITK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + +      +    +  L++++    +  L ++M  AA  + FE+AA  RD++  LKS  
Sbjct: 600 VAEKREVYTA----KTKLTRQEIVDIIDELERKMKEAAAAMEFEKAAEYRDQMLELKSKL 655


>gi|296533738|ref|ZP_06896286.1| excision endonuclease subunit UvrB [Roseomonas cervicalis ATCC
           49957]
 gi|296265933|gb|EFH12010.1| excision endonuclease subunit UvrB [Roseomonas cervicalis ATCC
           49957]
          Length = 746

 Score =  871 bits (2251), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/678 (62%), Positives = 526/678 (77%), Gaps = 6/678 (0%)

Query: 120 GKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGS 179
              + P +  S       +   Q+ + Y P+GDQPAAI QL++G+   E+ Q+LLGVTGS
Sbjct: 8   ASPFVPPKRPSPP----SLRRLQVVSPYEPAGDQPAAIGQLVEGLRQGERDQVLLGVTGS 63

Query: 180 GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239
           GKTFTMAKVIE +QRP +++APNK LAAQLY E K+FFP NAVEYFVSYYDYYQPEAYVP
Sbjct: 64  GKTFTMAKVIEHVQRPTLILAPNKTLAAQLYGEMKSFFPENAVEYFVSYYDYYQPEAYVP 123

Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
           R+DTYIEK++ INEQIDRMRHSAT++LLERND I+V+SVSCIYGIGSVE YS M+++L++
Sbjct: 124 RSDTYIEKDAQINEQIDRMRHSATQALLERNDVIIVASVSCIYGIGSVELYSNMVIKLQL 183

Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359
           G  + +  LL +LV+QQY+R D    RGTFRV G++++++PSHLED AWR+S+FG++I+ 
Sbjct: 184 GGRMARDVLLKALVEQQYRRNDAAFQRGTFRVRGETVDVWPSHLEDRAWRISLFGDEIDG 243

Query: 360 ISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419
           + EF PLTG+    +E++ IYANSHYVTPRPTL  A++ I+ ELK RL EL  EG+LLEA
Sbjct: 244 LREFDPLTGEIAGEMESVAIYANSHYVTPRPTLLQAIRDIRVELKQRLEELNAEGKLLEA 303

Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT 479
           QRLEQR T+DLEM+ETTGSC+ IENYSRYL+GR PG+PPPTLFEY+PE++LL VDESHVT
Sbjct: 304 QRLEQRTTFDLEMMETTGSCKGIENYSRYLSGRGPGQPPPTLFEYLPENALLVVDESHVT 363

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           +PQI GMYRGDF RK  L+E+GFRLPSCMDNRPL+FEEW+  RP T+ VSATPG WE+E+
Sbjct: 364 VPQIGGMYRGDFARKTILSEFGFRLPSCMDNRPLKFEEWDSFRPDTLFVSATPGGWEMER 423

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
             G+  EQ+IRPTGL DP  EIR    QV+D+  E     QQG R+L+T LTKRMAEDLT
Sbjct: 424 SGGVFAEQVIRPTGLTDPVCEIRPVEGQVDDLLAECRTVMQQGGRVLVTTLTKRMAEDLT 483

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           EY+ E  I+VRY+HS+V TLERIEIIRDLR G FDVLVGINLLREGLDIPEC LVAILDA
Sbjct: 484 EYMTEAGIKVRYLHSDVDTLERIEIIRDLRKGVFDVLVGINLLREGLDIPECALVAILDA 543

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
           DKEGFLRS TSLIQTIGRAARN   +V+LYAD +T S++ A++ET RRR KQ  +N +H 
Sbjct: 544 DKEGFLRSTTSLIQTIGRAARNAEGRVVLYADRMTDSLKRALEETDRRRAKQQAYNAEHG 603

Query: 720 INPQSVKEKIMEVIDPILLEDAATTNISIDAQQ--LSLSKKKGKAHLKSLRKQMHLAADN 777
           I PQ+++ +I +V+  +  +D  T   +            K  +A +  L ++M  AA +
Sbjct: 604 ITPQTIRRQISDVLQSVYEQDYVTVAPTAAEADGPAEFVGKDLRASIAELERKMRAAAAD 663

Query: 778 LNFEEAARIRDEIKRLKS 795
           L FE AAR+RDEIKRL++
Sbjct: 664 LEFETAARLRDEIKRLEN 681


>gi|138896673|ref|YP_001127126.1| excinuclease ABC subunit B [Geobacillus thermodenitrificans NG80-2]
 gi|134268186|gb|ABO68381.1| Excinuclease ABC subunit B [Geobacillus thermodenitrificans NG80-2]
          Length = 659

 Score =  871 bits (2250), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/658 (54%), Positives = 470/658 (71%), Gaps = 2/658 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             FQ+ + Y P GDQP AI +L+ G+    K Q LLG TG+GKTFT++ VI  + +P +V
Sbjct: 3   NRFQLVSSYQPQGDQPQAIEKLVDGLKRGVKHQTLLGATGTGKTFTISNVIAKVNKPTLV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++
Sbjct: 63  IAHNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKL 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY 
Sbjct: 123 RHSATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNTLLRRLVDIQYD 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ +   E + 
Sbjct: 183 RNDIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEVLGEREHVA 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SH+VT    +  A+  I++EL+ RL EL ++G+LLEAQRLEQR  YDLEM+   G 
Sbjct: 243 IFPASHFVTREEKMKLAIANIEKELEERLAELREQGKLLEAQRLEQRTRYDLEMMREMGF 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L  R PG  P TL +Y P+D L+ +DESHVT+PQ+ GMY GD  RK  L 
Sbjct: 303 CSGIENYSRHLALRPPGSTPYTLLDYFPDDFLIIIDESHVTLPQLRGMYNGDRARKQVLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS +DNRPL F+E+       I VSATPG +ELE   G +VEQIIRPTGL+DP 
Sbjct: 363 DHGFRLPSALDNRPLTFDEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPT 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +++R    Q++D+  EI+   ++  R L+T LTK+MAEDLT+YL E   +V Y+HSE+KT
Sbjct: 422 IDVRPIAGQIDDLISEIHERVERNERTLVTTLTKKMAEDLTDYLKEAGFKVAYLHSEIKT 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LERIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 482 LERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN N  VI+YADTITKS+++AI ET RRR  Q E+NKKH I P+++++ I +VI     
Sbjct: 542 ARNANGHVIMYADTITKSMEIAIQETKRRRTIQEEYNKKHGIVPRTIQKDIRDVIRATYA 601

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +   T         +++K++ +  ++ L  +M  AA  L+FE AA++RD I  LK+ 
Sbjct: 602 AEETETY-EAKPTAANMTKQEREELIRQLEAEMKEAAKALDFERAAQLRDVIFELKAE 658


>gi|304316126|ref|YP_003851271.1| excinuclease ABC subunit B [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777628|gb|ADL68187.1| excinuclease ABC, B subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 661

 Score =  871 bits (2250), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/658 (53%), Positives = 485/658 (73%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ +DY P+GDQP AI +L +G++   K Q LLGVTGSGKT+TMA +I+ + +P +
Sbjct: 1   MSEFKLVSDYRPTGDQPEAIKKLTEGVNMGLKCQTLLGVTGSGKTYTMANIIKNVNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK++SINE+ID+
Sbjct: 61  VIAHNKTLAAQLCSEFKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIEKDASINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G  E Y  +++ L+ G   ++ E+L  LV   Y
Sbjct: 121 LRHSATAALFERRDVIIVASVSCIYGLGDPEDYEDLMLSLRPGMVKDRDEILKKLVDIHY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI  +RG FRV GD IE+FP+   + A R+ +FG++I+ I+E   LTG+ +     +
Sbjct: 181 ERNDINFVRGKFRVRGDVIEVFPASSSEKAIRIELFGDEIDRITEIDVLTGEIVGERNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHY T +  L  A++ I++EL+ R  EL+ +G++LEA+RL+QR  YD+EML+  G
Sbjct: 241 AIFPASHYATSKEKLKRAIESIEKELEERYKELKDQGKILEAERLKQRTNYDIEMLQEVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+++GR  G PP TL +Y P+D L+F+DESHVTIPQI GMY GD  RK +L
Sbjct: 301 YCSGIENYSRHISGRPAGSPPYTLLDYFPDDFLMFIDESHVTIPQIRGMYNGDRARKESL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+FEE+       I VSATPG +ELE  +  +VEQIIRPTGLVDP
Sbjct: 361 VDFGFRLPSAFDNRPLKFEEFEERINQLICVSATPGPYELEHSE-RVVEQIIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V+++  + QV+D+  EI +  ++G R+L+T LTK+MAEDLT+Y  +  ++V+Y+HS+++
Sbjct: 420 EVKVKPVKGQVDDLLSEIKMTVEKGYRVLVTTLTKKMAEDLTDYFNDMGVKVKYLHSDIE 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLGKFDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMEIIRDLRLGKFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VI+YADT+T+S++ AI+ET RRR  Q+++NKKH I P+++ + I +VI+   
Sbjct: 540 AARNAEGRVIMYADTVTESMKNAINETNRRRAIQMDYNKKHGITPKTIVKGIRDVIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + +        +A+   + +   +  +  L K+M  AA  L FE+AA++RD I  L+ 
Sbjct: 600 VAEDKVPYSIKEAEV--VDRVSIEKMISELEKEMRKAAKELEFEKAAKLRDRIFELQK 655


>gi|197104262|ref|YP_002129639.1| excinuclease ABC subunit B protein [Phenylobacterium zucineum HLK1]
 gi|196477682|gb|ACG77210.1| excinuclease ABC subunit B protein [Phenylobacterium zucineum HLK1]
          Length = 747

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 446/707 (63%), Positives = 542/707 (76%), Gaps = 11/707 (1%)

Query: 92  REISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSG 151
           R  +   ++    A       D        +W PHR             F++ +DY P+G
Sbjct: 3   RTAAPAGVSDMSAAF------DYDENTMPLLWKPHRPERPEKSEGG-RRFKLVSDYQPAG 55

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQP AI +L++G+  RE  Q+LLGVTGSGKTFTMAKVIE  QRPA+++APNK LAAQLYS
Sbjct: 56  DQPQAIRELVEGLEGREHDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKTLAAQLYS 115

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           EF++FFP NAVE+FVSYYDYYQPEAYVPRTDTYIEK+SSINEQIDRMRHSATR++LER+D
Sbjct: 116 EFRSFFPENAVEFFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRAILERDD 175

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            IVV+SVSCIYGIGSVE+YS M  QLK GD V++K+L+  LV  QYKR D    RGTFR 
Sbjct: 176 VIVVASVSCIYGIGSVETYSAMTFQLKPGDRVDEKKLMGDLVALQYKRNDQAFERGTFRR 235

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD+IEIFP+H ED AWR+S+FG+++E I EF PLTG+K   ++ +KIYANSHYVTPRPT
Sbjct: 236 RGDTIEIFPAHYEDRAWRISLFGDEVEAIVEFDPLTGKKTAELQGVKIYANSHYVTPRPT 295

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           L  A+  IK ELK RL  L   G+LLEAQRLEQR T+DLEM+E TGSC  IENYSRYLTG
Sbjct: 296 LRQAINQIKVELKERLDWLVANGKLLEAQRLEQRTTFDLEMIEATGSCAGIENYSRYLTG 355

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
           R PGEPPPT FEYIP+++LLFVDESH T+PQI  MYRGD+ RK TLAE+GFRLPSC+DNR
Sbjct: 356 RRPGEPPPTFFEYIPDNALLFVDESHQTVPQIGAMYRGDYRRKWTLAEFGFRLPSCIDNR 415

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR----TQ 567
           PL+FEEW+ +RP T+ VSATPG WE+E+  G+  EQ+IRPTGL+DPPVE+R       +Q
Sbjct: 416 PLKFEEWDAMRPDTVHVSATPGPWEMEKTGGVFAEQVIRPTGLIDPPVEVRPVSKDGFSQ 475

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           V+DV DE+   A +G R L+TVLTK+MAEDLTE+++E+ +RVRYMHS+V TLERIEIIRD
Sbjct: 476 VDDVIDEVRQTAARGYRSLITVLTKKMAEDLTEFMHEQGLRVRYMHSDVDTLERIEIIRD 535

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LRLG FD+LVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARNV+ +VI
Sbjct: 536 LRLGAFDILVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVI 595

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           LYAD++T S++ A+ ET RRREKQ+ +N +H I P+SVK +I +++     +D  T  + 
Sbjct: 596 LYADSVTGSMERAMAETQRRREKQMAYNLEHGITPESVKSQIKDILASPYEKDRVTVPVG 655

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +            K  L+ L  +M  AA NL FEEAAR+RDEIKRLK
Sbjct: 656 VAEDGKPFLGDNFKTTLRDLENRMKEAAANLEFEEAARLRDEIKRLK 702


>gi|315497704|ref|YP_004086508.1| excinuclease abc, b subunit [Asticcacaulis excentricus CB 48]
 gi|315415716|gb|ADU12357.1| excinuclease ABC, B subunit [Asticcacaulis excentricus CB 48]
          Length = 723

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/690 (64%), Positives = 541/690 (78%), Gaps = 11/690 (1%)

Query: 111 QSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKV 170
             D P      +W+PHR             F + + Y P+GDQPAAIA+L++G ++ E+ 
Sbjct: 23  AQDFP----PALWSPHRPDRPQKSEGG-RRFVLHSAYEPAGDQPAAIAELVEGANAAERD 77

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           Q+LLGVTGSGKTFTMAKVIE  QRPA+++A NK LAAQLYSEFK FFP NAVEYFVSYYD
Sbjct: 78  QVLLGVTGSGKTFTMAKVIEQTQRPALILAHNKTLAAQLYSEFKAFFPENAVEYFVSYYD 137

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
           YYQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR++LER+D IVV+SVSCIYGIGSVE+Y
Sbjct: 138 YYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRAILERDDVIVVASVSCIYGIGSVETY 197

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           + M  +LK+G ++++ +L + LV  QYKR D    RGTFR  GD IEIFP+H ED AWRV
Sbjct: 198 TAMTFELKVGQTIDEAQLRADLVALQYKRNDAAFERGTFRRRGDVIEIFPAHYEDRAWRV 257

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
           S+FG++IE ++EF PLTG+K  +++ +K+YA SHYVTPRPTL  A+  IK ELK+RL +L
Sbjct: 258 SLFGDEIEALTEFDPLTGKKTADLKDLKVYAASHYVTPRPTLRQAIDRIKAELKLRLDQL 317

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
             EG+LLEAQRLEQR T+DLEM+E TG+C  IENYSRYLTGR PGEPPPT FEY+PE++L
Sbjct: 318 HAEGKLLEAQRLEQRTTFDLEMMEATGACAGIENYSRYLTGRAPGEPPPTFFEYLPENAL 377

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
           LFVDESHVT+PQI GMYRGDF RK+ LAEYGFRLPSCMDNRPL+FEEW  +RP T+ VSA
Sbjct: 378 LFVDESHVTVPQIGGMYRGDFARKSVLAEYGFRLPSCMDNRPLKFEEWEAMRPQTVHVSA 437

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR----TQVEDVYDEINLAAQQGLRIL 586
           TPG+WE+EQ  G+  EQ+IRPTGL+DPPVEIR        QV+DV  E+   A+ G R L
Sbjct: 438 TPGNWEMEQTGGVFTEQVIRPTGLIDPPVEIRPVSTGGANQVDDVIAEVREVAKNGYRSL 497

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +TVLTK+MAE+LTEY++E+ IRVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGL
Sbjct: 498 VTVLTKKMAENLTEYMHEQGIRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGL 557

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           DIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV  +VILYAD +T S++ A+ ET+R
Sbjct: 558 DIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVEGRVILYADKMTGSMERALAETSR 617

Query: 707 RREKQLEHNKKHNINPQSVKEKIMEVID-PILLEDAATTNISIDAQQ-LSLSKKKGKAHL 764
           RREKQ+ +N +H I P+SVK  I +++D P    D     + + A+          +A L
Sbjct: 618 RREKQMAYNAEHGITPESVKRGISDILDSPYEKADRVQVPVGVAAKDSKPFLGSNFQATL 677

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           K L  +M  AA NL FEEAAR+RDEIKRLK
Sbjct: 678 KDLETRMREAAGNLEFEEAARMRDEIKRLK 707


>gi|224826639|ref|ZP_03699740.1| excinuclease ABC, B subunit [Lutiella nitroferrum 2002]
 gi|224601240|gb|EEG07422.1| excinuclease ABC, B subunit [Lutiella nitroferrum 2002]
          Length = 670

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/664 (55%), Positives = 483/664 (72%), Gaps = 1/664 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQPAAIAQL++G+      Q LLGVTGSGKTFTMA VI    RPAI+
Sbjct: 8   SPFKLHQPFPPAGDQPAAIAQLVEGLSDGLSYQTLLGVTGSGKTFTMANVIARTGRPAII 67

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLYSE + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++M
Sbjct: 68  MAHNKTLAAQLYSEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQM 127

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+SLLER DC++V++VS IYGIG    Y QMI+ LK G+++ Q++++  LV  QY+
Sbjct: 128 RLSATKSLLERPDCVIVATVSAIYGIGDPSDYHQMILHLKEGETIAQRDIIGRLVAMQYE 187

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RGTFRV GD I+IFP+   ++A RVS+F +++E ++ F PLTG   + V    
Sbjct: 188 RNDLDFTRGTFRVRGDVIDIFPAESAELALRVSLFDDELETLTLFDPLTGVTRQRVGRFT 247

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IK EL+ R+   + EG+L+EAQR+EQR  +DLEML   G 
Sbjct: 248 VFPSSHYVTPRDTVLRACEKIKLELRERVDFYQHEGKLVEAQRIEQRTRFDLEMLYEMGF 307

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +GR PGEPPPTL +Y+P+++L+F+DESHVTIPQI GMY+GD  RK  L 
Sbjct: 308 CKGIENYSRHFSGRGPGEPPPTLIDYLPKNALMFIDESHVTIPQIGGMYKGDAARKLNLV 367

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ +SATP  +E     G +VEQ++RPTGL+DP 
Sbjct: 368 DYGFRLPSAADNRPLKFNEFERMMPQTVFISATPADYEAGHA-GQVVEQVVRPTGLIDPE 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR   +QV+D+  EI L      R+L+T LTKRMAE L +Y  E  ++VRY+HS++ T
Sbjct: 427 IEIRPVASQVDDLLSEITLRVGSNERVLVTTLTKRMAEQLADYYTEHGVKVRYLHSDIDT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 487 VERVEIIRDLRLGMFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSDRSLIQTIGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN++ K ILYAD IT S++ AIDET RRR KQ+  N +H I P+ V++KI ++ID +  
Sbjct: 547 ARNLHGKAILYADRITNSMRRAIDETERRRTKQIAFNTEHGIVPKGVEKKIKDIIDGVYS 606

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
            +A    +  DA+   + +K     +K L K M  AA NL FE+AA +RD++K LK   +
Sbjct: 607 AEAEKKKLVDDARVAMMDEKALAKEIKRLEKDMLEAARNLEFEKAAGLRDQLKALKEKAW 666

Query: 799 FQGL 802
              L
Sbjct: 667 INEL 670


>gi|212640367|ref|YP_002316887.1| excinuclease ABC subunit B [Anoxybacillus flavithermus WK1]
 gi|212561847|gb|ACJ34902.1| Excinuclease ABC (subunit B, helicase) [Anoxybacillus flavithermus
           WK1]
          Length = 657

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/660 (55%), Positives = 482/660 (73%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ + Y P GDQP AIA+L++GI   +K Q LLG TG+GKTFT++ VI+ + +P +
Sbjct: 1   MSAFQLVSAYEPRGDQPKAIAKLVEGIQQGKKHQTLLGATGTGKTFTISNVIQQVNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK++SIN++ID+
Sbjct: 61  VIAHNKTLAGQLYSEFKQFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+++SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY
Sbjct: 121 LRHSATSALFERRDVIIIASVSCIYGLGSPEEYRELVVSLRVGMEIERDHLLRRLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD +EIFP+  ++   R+  FG++IE I E   LTG  +   E +
Sbjct: 181 ERNDIDFRRGTFRVRGDVVEIFPASRDEHCIRIEFFGDEIERIREVDALTGYVMAEREHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+VT    +  A++ I++EL+ RL EL ++G+LLEAQRLEQR  YD+EM++  G
Sbjct: 241 AIFPASHFVTREEKMKLAIENIEKELEERLCELREQGKLLEAQRLEQRTRYDIEMMKEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LT R PG  P TL +Y P+D L+ +DESHVT+PQI GMY GD  RK  L
Sbjct: 301 FCSGIENYSRHLTLRPPGSTPYTLLDYFPDDFLIVIDESHVTLPQIRGMYNGDKARKEVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL FEE+       I VSATPG +ELE C+  +VEQIIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLTFEEFEQKVNQVIYVSATPGPYELEHCRE-VVEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R    Q++D+ DEI        R L+T LTK+MAEDLT+YL +  I+V Y+HSE+K
Sbjct: 420 TIDVRPIAGQIDDLVDEIQKRIACNERTLVTTLTKKMAEDLTDYLKDIGIQVAYLHSEIK 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N  VI+YADTITKS+++AI+ET RRR  Q  +N++H I P+++++ I +VI    
Sbjct: 540 AARNANGHVIMYADTITKSMEIAINETKRRRAIQEAYNREHGIVPKTIQKDIPDVIRATF 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             +   T  + D +   LSK++  A +  L ++M  AA  L+FE AA +RD I  LK+  
Sbjct: 600 AAEEKETYETKDVRH--LSKEERVALIAKLEQEMKEAAKALHFERAAELRDLILELKAEV 657


>gi|300023982|ref|YP_003756593.1| excinuclease ABC subunit B [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525803|gb|ADJ24272.1| excinuclease ABC, B subunit [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 901

 Score =  869 bits (2246), Expect = 0.0,   Method: Composition-based stats.
 Identities = 434/691 (62%), Positives = 544/691 (78%), Gaps = 3/691 (0%)

Query: 110 IQSDNPLLKNG-KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           + + +P++  G  ++ PHR          I  F++++DY P GDQP AI++L+ G+   E
Sbjct: 33  LMASHPIVSGGMPMFMPHRPERPEKSEGGIR-FKIESDYEPRGDQPQAISELVDGVAKHE 91

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
             Q+LLGVTGSGKTFTMA VI+A QRPA+++APNK LAAQLY EFK+FFP NAVEYFVSY
Sbjct: 92  HNQVLLGVTGSGKTFTMAHVIQATQRPALILAPNKTLAAQLYGEFKSFFPDNAVEYFVSY 151

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPRTDTYIEKE+SINEQIDRMRH+ATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 152 YDYYQPEAYVPRTDTYIEKEASINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVE 211

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y+ M   ++ G+ + + +LL+ LV   Y+R D   +RG+FR  GD++E+FP+HLED AW
Sbjct: 212 TYTAMTFTVRAGEQISRDQLLADLVALHYRRNDQNFVRGSFRARGDTVEVFPAHLEDRAW 271

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R S+FG+++E I EF PLTG K   +  +K+YANSHYVTP+PTL  A+K IK ELK RL 
Sbjct: 272 RFSLFGDEVESIVEFDPLTGAKTDELALVKLYANSHYVTPKPTLQQAIKSIKIELKQRLD 331

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           EL   G+LLEAQRLEQR T+D+EM+E TGSC  IENYSRYLTGRNPG+PPPTLFEY+P++
Sbjct: 332 ELYDAGKLLEAQRLEQRTTFDMEMMEATGSCAGIENYSRYLTGRNPGDPPPTLFEYLPDN 391

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +L+F DESHVT+PQI GM+RGDF RKATLAEYGFRLPSCMDNRPLRFEEW+ +RP ++ V
Sbjct: 392 ALVFADESHVTVPQIGGMFRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPQSVFV 451

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATP SWE+EQ  G   EQ+IRPTGL+DP VEIRSA+TQV+D+ DE+   A++G R L+T
Sbjct: 452 SATPASWEMEQTGGAFAEQVIRPTGLIDPVVEIRSAKTQVDDLLDEVRQVARKGYRTLVT 511

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VLTKRMAEDLTEY++E  +RVRYMHS+++TLERIEIIRDLRLG FDVL+GINLLREGLDI
Sbjct: 512 VLTKRMAEDLTEYMHESGVRVRYMHSDIETLERIEIIRDLRLGAFDVLIGINLLREGLDI 571

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PEC LVAILDADKEGFLRS+TSL+QTIGRAARNV+ KVILYAD +T S+  AI ET RRR
Sbjct: 572 PECALVAILDADKEGFLRSETSLVQTIGRAARNVDGKVILYADQMTGSMDRAIAETNRRR 631

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS-IDAQQLSLSKKKGKAHLKSL 767
           EKQ+  N+ + I P+S+K  I +V+  +  +D  T +    D   +       +A +  +
Sbjct: 632 EKQMAWNEANGITPESIKRNIHDVLQSVYEQDHVTVDAGLADGDAVQSLGHNLQAVVADM 691

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
            ++M  AA +L FE AAR+RDEIKRL+ +  
Sbjct: 692 ERRMKEAAADLEFETAARLRDEIKRLRETEL 722


>gi|297531342|ref|YP_003672617.1| excinuclease ABC subunit B [Geobacillus sp. C56-T3]
 gi|297254594|gb|ADI28040.1| excinuclease ABC, B subunit [Geobacillus sp. C56-T3]
          Length = 658

 Score =  869 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/656 (56%), Positives = 474/656 (72%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P GDQP AIA+L+ G+    K Q LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 5   FQLVSPYEPQGDQPQAIAKLVDGLRLGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ +   E + I+
Sbjct: 185 DIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  +G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D L+ VDESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       I VSATPG +ELE   G +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    ++  R L+T LTK+MAEDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTITKS+++AI ET RRR  Q E+N+KH I P++VK++I +VI      +
Sbjct: 544 NANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 +  A   +++K++ +  ++ L  +M  AA  L+FE AA++RD I  LK+ 
Sbjct: 604 ETEMYEAKPA--AAMTKQEREELIRKLEAEMKEAAKALDFERAAQLRDIIFELKAE 657


>gi|261420530|ref|YP_003254212.1| excinuclease ABC subunit B [Geobacillus sp. Y412MC61]
 gi|319768199|ref|YP_004133700.1| excinuclease ABC subunit B [Geobacillus sp. Y412MC52]
 gi|261376987|gb|ACX79730.1| excinuclease ABC, B subunit [Geobacillus sp. Y412MC61]
 gi|317113065|gb|ADU95557.1| excinuclease ABC, B subunit [Geobacillus sp. Y412MC52]
          Length = 658

 Score =  869 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/656 (55%), Positives = 475/656 (72%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P GDQP AIA+L+ G+    K Q LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 5   FQLVSPYEPQGDQPQAIAKLVDGLRLGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ +   E + I+
Sbjct: 185 DIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  +G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D L+ VDESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       I +SATPG +ELE   G +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYISATPGPYELEHSPG-VVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI+   ++  R L+T LTK+MAEDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPTKGQIDDLIGEIHERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTITKS+++AI ET RRR  Q E+N+KH I P++VK++I +VI      +
Sbjct: 544 NANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 +  A   +++K++ +  ++ L  +M  AA  L+FE AA++RD I  LK+ 
Sbjct: 604 ETEMYEAKPA--AAMTKQEREELIRKLEAEMKEAAKALDFERAAQLRDIIFELKAE 657


>gi|332188833|ref|ZP_08390542.1| excinuclease ABC, B subunit [Sphingomonas sp. S17]
 gi|332011143|gb|EGI53239.1| excinuclease ABC, B subunit [Sphingomonas sp. S17]
          Length = 730

 Score =  869 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 440/694 (63%), Positives = 544/694 (78%), Gaps = 3/694 (0%)

Query: 106 LARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH 165
           +A  I++     + G  + PHR             F++ TDY  SGDQPAAI +L     
Sbjct: 1   MAIQIRTTLDEPETGVSFIPHRPSRPEKAEGG-KRFELVTDYTASGDQPAAIRELTAAAR 59

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           + +K Q+LLGVTGSGKTFTMAKVIE +QRPA+++APNKILAAQLY EFKNFFP+NAVEYF
Sbjct: 60  AGDKDQVLLGVTGSGKTFTMAKVIEELQRPALILAPNKILAAQLYGEFKNFFPNNAVEYF 119

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
           VSYYDYYQPEAYVPR+DTYIEKESSINE IDRMRHSATR+LLER+D I+V+SVSC+YGIG
Sbjct: 120 VSYYDYYQPEAYVPRSDTYIEKESSINESIDRMRHSATRALLERDDVIIVASVSCLYGIG 179

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           SVE+YS MI  LK G SV+Q+E++  LV  QYKR D   +RG FRV GD++EIFPSH ED
Sbjct: 180 SVETYSAMIFDLKKGQSVDQREIIRKLVALQYKRNDAAFMRGNFRVKGDNLEIFPSHYED 239

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
            AWRVS FG++IEEI EF PLTG+K+ ++ +++IYANSHYVTP PT+  A++ IK EL  
Sbjct: 240 SAWRVSFFGDEIEEIVEFDPLTGKKVAHLNSVRIYANSHYVTPGPTMKQAVEAIKFELTE 299

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           RL ELE EG+LLE QRLEQR  +DLEM+  TGSC  IENYSR+LTGR PGEPPPTLFEY+
Sbjct: 300 RLKELEAEGKLLERQRLEQRTNFDLEMIAATGSCNGIENYSRFLTGRLPGEPPPTLFEYL 359

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
           PE+++LFVDESHVTI QI+GM RGD  RK TLAEYGFRLPS +DNRPLRF EW+ +RP T
Sbjct: 360 PENAVLFVDESHVTIGQINGMSRGDHRRKITLAEYGFRLPSAIDNRPLRFNEWDAMRPQT 419

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
           + VSATPG+WE+EQ  G+ VEQ+IRPTGL+DPPVEI+    QV+D+  E     + G R 
Sbjct: 420 VSVSATPGNWEMEQTGGVFVEQVIRPTGLIDPPVEIKPVEEQVQDLIIEARKTTELGYRT 479

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+T LTKRMAEDLTEY++E  I+VRYMHS+V+TLERIE+IRDLRLG +DVL+GINLLREG
Sbjct: 480 LVTTLTKRMAEDLTEYMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLIGINLLREG 539

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD IT S++ A+ ET+
Sbjct: 540 LDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRITGSMERAMSETS 599

Query: 706 RRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
           RRREKQ+ +N +H I PQ+++ +I ++I  +   D  T  + ID  +  +     +A+++
Sbjct: 600 RRREKQMAYNTEHGITPQTIRRQIGDIIAHVASGDQVT--VPIDEDRPHMVGHNLRAYIE 657

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
            L K+M  AA +L FEEA R+RDEI++L++    
Sbjct: 658 ELEKKMRKAAADLEFEEAGRLRDEIRQLENEELG 691


>gi|103485770|ref|YP_615331.1| excinuclease ABC subunit B [Sphingopyxis alaskensis RB2256]
 gi|98975847|gb|ABF51998.1| Excinuclease ABC subunit B [Sphingopyxis alaskensis RB2256]
          Length = 728

 Score =  868 bits (2243), Expect = 0.0,   Method: Composition-based stats.
 Identities = 438/694 (63%), Positives = 540/694 (77%), Gaps = 2/694 (0%)

Query: 106 LARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH 165
           +A  I++    +   + + PHR    +        F++ +DY P+GDQP AI +L++   
Sbjct: 1   MAIQIRTSLDEIDTAEGYVPHRPARPDKVEGG-KRFELVSDYEPAGDQPTAIRELVETAR 59

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           + E+ Q+LLGVTGSGKTFTMAKVIE +QRPA+++APNKILAAQLY EFK+FFP+NAVEYF
Sbjct: 60  TGERDQVLLGVTGSGKTFTMAKVIEELQRPALILAPNKILAAQLYGEFKSFFPNNAVEYF 119

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
           VSYYDYYQPEAYVPR+DTYIEKESS+NE IDRMRHSATR+LLER+D I+V+SVSC+YGIG
Sbjct: 120 VSYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVIIVASVSCLYGIG 179

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           SVE+YS MI  LK G   + +E++  LV  QYKR D    RG FRV GDS+EIFPSH ED
Sbjct: 180 SVETYSAMIFDLKKGQVADNREIIRKLVALQYKRNDQAFARGNFRVRGDSLEIFPSHYED 239

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           +AWRVS FG++IEEI+EF PLTG+KI ++ +I+IYANSHYVTP PTL  A + I+ EL  
Sbjct: 240 MAWRVSFFGDEIEEITEFDPLTGKKIASLNSIRIYANSHYVTPGPTLKQATEAIRHELAE 299

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           RL ELE EGRLLEAQRLEQR  +DLEM+  TGSC  IENYSR+LTGR PGEPPPTLFEY+
Sbjct: 300 RLKELEAEGRLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYL 359

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
           P+++LLFVDESH TIPQI  M +GD  RK TLAEYGFRLPSC+DNRPLRF EW+ +RP T
Sbjct: 360 PDNALLFVDESHQTIPQIGAMSKGDHRRKITLAEYGFRLPSCIDNRPLRFAEWDMMRPQT 419

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
           I VSATPG+WE+E+ QG+  EQ+IRPTGL+DPPVEIR    QV+D+  E    A  G R 
Sbjct: 420 ISVSATPGTWEMERTQGVFAEQVIRPTGLIDPPVEIRPVEEQVDDLIAEAKKTAAAGYRT 479

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+T LTKRMAEDLTE+L+E  ++VRYMHS+V+TLERIEIIRDLRLG FDVLVGINLLREG
Sbjct: 480 LVTTLTKRMAEDLTEFLHEAGLKVRYMHSDVETLERIEIIRDLRLGVFDVLVGINLLREG 539

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LDIPECGLVAILDADKEGFLRS+TSL+QTIGRAARNV+ +VILYAD IT S++ A+ ET 
Sbjct: 540 LDIPECGLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADRITGSMERALRETD 599

Query: 706 RRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
           RRREKQ  +N+ H I P ++K  I ++I  +  +D    +I  D +   +     +A+++
Sbjct: 600 RRREKQKAYNEAHGITPTTIKRNIGDIIAHVASKDGVVIDIGED-KPAHMVGHNLRAYIQ 658

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
            L K+M  AA +L FEEA R+RDEI++L++    
Sbjct: 659 ELEKKMRDAAADLEFEEAGRLRDEIRKLEADELG 692


>gi|16127211|ref|NP_421775.1| excinuclease ABC subunit B [Caulobacter crescentus CB15]
 gi|221236012|ref|YP_002518449.1| excinuclease ABC subunit B [Caulobacter crescentus NA1000]
 gi|13424613|gb|AAK24943.1| excinuclease ABC, subunit B [Caulobacter crescentus CB15]
 gi|220965185|gb|ACL96541.1| excinuclease ABC subunit B [Caulobacter crescentus NA1000]
          Length = 749

 Score =  868 bits (2242), Expect = 0.0,   Method: Composition-based stats.
 Identities = 441/686 (64%), Positives = 538/686 (78%), Gaps = 7/686 (1%)

Query: 115 PLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLL 174
           P      +WTPHR    +        F++ +DY P+GDQP AIA+L++G+ + ++ Q+LL
Sbjct: 22  PGGAIPALWTPHRPSRPDKSEGG-KKFKLVSDYQPAGDQPTAIAELVEGLQNGDQDQVLL 80

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           GVTGSGKTFTMA+VI   QRPA+++APNK LAAQLYSE K+FFP NAVEYFVSYYDYYQP
Sbjct: 81  GVTGSGKTFTMAQVIARTQRPALILAPNKTLAAQLYSEMKSFFPENAVEYFVSYYDYYQP 140

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           EAYVPRTDTYIEK+SSINEQIDRMRHSATR++LER+D IVV+SVSCIYGIGSVE+Y+ M 
Sbjct: 141 EAYVPRTDTYIEKDSSINEQIDRMRHSATRAILERDDVIVVASVSCIYGIGSVETYTAMT 200

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             L++G  V++K+L++ LV QQYKR D    RGTFR  GD+IEIFP+H ED AWRV+MFG
Sbjct: 201 FTLEVGQRVDEKQLIADLVAQQYKRNDQAFERGTFRRRGDTIEIFPAHYEDRAWRVTMFG 260

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           +++E +SEF  LTG+K  ++E IK+YANSH+VTPRPTL  A+  I++ELK RL  L   G
Sbjct: 261 DEVEALSEFDTLTGKKTADLEMIKVYANSHHVTPRPTLRQAIIAIRQELKERLEWLTANG 320

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           +LLEAQRLEQR T+DLEM+ETTGSC  IENYSRYL+GR  GEPPPT FEYIP+++LLF D
Sbjct: 321 KLLEAQRLEQRTTFDLEMIETTGSCAGIENYSRYLSGRKTGEPPPTFFEYIPDNALLFTD 380

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           ESH T+PQI  MY+GD +RK TLAEYGFRLPS +DNRPL+FEEW+ +RP ++ VSATP +
Sbjct: 381 ESHQTVPQIGAMYKGDRNRKWTLAEYGFRLPSALDNRPLKFEEWDAMRPQSVHVSATPAN 440

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSAR----TQVEDVYDEINLAAQQGLRILLTVL 590
           WELE+  G+  EQ+IRPTGL+DPPVE+R       +QV+DV DEI    Q+G R L+TVL
Sbjct: 441 WELERAGGVFAEQVIRPTGLIDPPVEVRPVSKDGASQVDDVVDEIRQTIQKGYRTLVTVL 500

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK+MAEDLTEYL E+ IRVRYMHS+V T+ERIEIIRDLRLG FDVLVGINLLREGLDIPE
Sbjct: 501 TKKMAEDLTEYLTEQGIRVRYMHSDVDTIERIEIIRDLRLGHFDVLVGINLLREGLDIPE 560

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
           CGLVAILDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S++ A+ ET RRREK
Sbjct: 561 CGLVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADRVTGSMERAMAETARRREK 620

Query: 711 QLEHNKKHNINPQSVKEKIMEVID-PILLEDAATTNISI-DAQQLSLSKKKGKAHLKSLR 768
           Q  +N +H I P+SVK  I ++++ P    D     + + +      S    KA LK L 
Sbjct: 621 QHAYNLEHGITPESVKRDIKDILNSPYERGDRVLVPMGMSETDDRPFSGDNFKAALKDLE 680

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLK 794
            +M  AA NL FE AAR+RDEIKR+K
Sbjct: 681 AKMREAAANLEFETAARLRDEIKRMK 706


>gi|93279489|pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
           By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
 gi|93279490|pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
           By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
          Length = 658

 Score =  867 bits (2241), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/656 (56%), Positives = 474/656 (72%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y P GDQP AIA+L+ G+    K Q LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 5   FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ +   E + I+
Sbjct: 185 DIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  +G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D L+ VDESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       I VSATPG +ELE   G +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    ++  R L+T LTK+MAEDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTITKS+++AI ET RRR  Q E+N+KH I P++VK++I +VI      +
Sbjct: 544 NANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 +  A   +++K++ +  +++L  +M  AA  L+FE AA++RD I  LK+ 
Sbjct: 604 ETEMYEAKPA--AAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKAE 657


>gi|56421621|ref|YP_148939.1| excinuclease ABC subunit B [Geobacillus kaustophilus HTA426]
 gi|81819619|sp|Q5KVB5|UVRB_GEOKA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56381463|dbj|BAD77371.1| excinuclease ABC subunit B [Geobacillus kaustophilus HTA426]
          Length = 658

 Score =  867 bits (2241), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/656 (56%), Positives = 474/656 (72%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y P GDQP AIA+L+ G+    K Q LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 5   FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ +   E + I+
Sbjct: 185 DIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  +G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D L+ VDESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       I VSATPG +ELE   G +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    ++  R L+T LTK+MAEDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTITKS+++AI ET RRR  Q E+N+KH I P++VK++I +VI      +
Sbjct: 544 NANGHVIMYADTITKSMEVAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 +  A   +++K++ +  +++L  +M  AA  L+FE AA++RD I  LK+ 
Sbjct: 604 ETEMYEAKPA--AAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKAE 657


>gi|326389080|ref|ZP_08210662.1| excinuclease ABC subunit B [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206680|gb|EGD57515.1| excinuclease ABC subunit B [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 730

 Score =  867 bits (2240), Expect = 0.0,   Method: Composition-based stats.
 Identities = 431/690 (62%), Positives = 528/690 (76%), Gaps = 2/690 (0%)

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169
           I+           + PH+             F + +DY PSGDQP AIA L+  I   ++
Sbjct: 6   IRRGLAEPDTTGTFVPHKPHRPEKSEGG-KPFTVVSDYQPSGDQPTAIADLVASIEDDDR 64

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
            Q+LLGVTGSGKTFTMAKVIEA+QRPA+++APNKILAAQLY EFK+FFP NAVEYFVSYY
Sbjct: 65  TQVLLGVTGSGKTFTMAKVIEAVQRPALILAPNKILAAQLYGEFKSFFPDNAVEYFVSYY 124

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
           DYYQPEAYVPR+DTYIEKESS+NE IDRMRHSATR+LLER+D I+V+SVSC+YGIGSVE+
Sbjct: 125 DYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVIIVASVSCLYGIGSVET 184

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           YS M+  LK GD+V+ +E++  LV  QYKR D    RG+FRV GD++EIFPSH ED+AWR
Sbjct: 185 YSAMVFDLKKGDTVDSREIIRKLVALQYKRNDHAFARGSFRVRGDNLEIFPSHYEDMAWR 244

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           VS FG++IEEI+EF PLTG+    ++ +++YANSH+VTP PTL  AM  I+ EL  RL E
Sbjct: 245 VSFFGDEIEEIAEFDPLTGKAGARLDRVRVYANSHHVTPGPTLKQAMDAIRFELSERLKE 304

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
           L  EG LLEAQRLEQR  +DLEM+  TGSC  IENYSR+LTGR PGEPPPTLFEY+PE++
Sbjct: 305 LTSEGHLLEAQRLEQRTNFDLEMMAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLPENA 364

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLF+DESH TIPQI  M RGD  RK TLAEYGFRLPSC+DNRPLRF EW+ +RP T+ VS
Sbjct: 365 LLFIDESHQTIPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQTVAVS 424

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
           ATPGSWE+EQ  G+  EQ+IRPTGL+DPPV IR    QV+D   E    A++G R L+T 
Sbjct: 425 ATPGSWEMEQSGGVFAEQVIRPTGLIDPPVFIRPVEDQVQDCIAECRATAEKGYRTLVTT 484

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           LTKRMAEDLTE+++E  +RVRYMHS+V+TLERIE+IRDLRLG +DVLVGINLLREGLDIP
Sbjct: 485 LTKRMAEDLTEFMHEAGLRVRYMHSDVETLERIELIRDLRLGVYDVLVGINLLREGLDIP 544

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           ECGLV ILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD +T S++ AI ET RRR 
Sbjct: 545 ECGLVCILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRMTGSMERAIAETDRRRA 604

Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRK 769
           +Q  +N++H I P ++K +I ++I      D     +  D +   L     +A+++ L K
Sbjct: 605 RQQAYNEEHGITPATIKRQIADIIADTASRDGVVVELE-DEETTHLVGHNLRAYIEDLEK 663

Query: 770 QMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
           +M  AA +L FEEA R+RDEI+RL++S   
Sbjct: 664 RMRAAAADLEFEEAGRLRDEIRRLEASELG 693


>gi|241662553|ref|YP_002980913.1| excinuclease ABC subunit B [Ralstonia pickettii 12D]
 gi|240864580|gb|ACS62241.1| excinuclease ABC, B subunit [Ralstonia pickettii 12D]
          Length = 696

 Score =  867 bits (2240), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/688 (54%), Positives = 493/688 (71%), Gaps = 5/688 (0%)

Query: 120 GKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGS 179
            ++ +PH            + FQ+   Y P+GDQP AI QL++ I      Q LLGVTGS
Sbjct: 5   SQVPSPHDESKFVTFEG--SPFQLYQPYPPAGDQPEAIRQLVENIEDGLSYQTLLGVTGS 62

Query: 180 GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239
           GKTFTMA VI  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP
Sbjct: 63  GKTFTMANVIAQVGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVP 122

Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
           + D +IEK+SSINE I++MR SAT+SLLER D ++V++VS IYGIG+   Y QMI+ L+ 
Sbjct: 123 QRDLFIEKDSSINEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPSEYHQMILTLRA 182

Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359
           GD V Q+++++ L+  QY R +    RGTFRV GD+++IFP+   ++A R+ +F +++E 
Sbjct: 183 GDKVSQRDVIARLIAMQYTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDEVES 242

Query: 360 ISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419
           +  F PLTG+  + +    +Y +SHYVTPR T+  A++ IK EL+ RL    KE +L+EA
Sbjct: 243 LQLFDPLTGRVRQKIPRFTVYPSSHYVTPRETVLRAIETIKAELRERLDFFYKENKLVEA 302

Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT 479
           QRLEQR  +DLEML+  G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHV 
Sbjct: 303 QRLEQRTRFDLEMLQELGFCKGIENYSRHLSGSAPGEPPPTLVDYLPPDALMFLDESHVL 362

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           I Q++GMY GD  RK TLAEYGFRLPS +DNRPL+F E+         VSATPG +E + 
Sbjct: 363 IGQLNGMYNGDRARKETLAEYGFRLPSALDNRPLKFAEFETKMRQVTFVSATPGDYEKKT 422

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
               +VEQ++RPTGLVDP +E+R A TQV+D+  EI++  + G R+L+T LTKRMAE LT
Sbjct: 423 AGTEVVEQVVRPTGLVDPIIEVRPATTQVDDLLSEIHVRVKAGERVLVTTLTKRMAEQLT 482

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           E+L E  I+VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDA
Sbjct: 483 EFLSENGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDA 542

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
           DKEGFLR++ SLIQTIGRAARNVN   ILYAD +T S++ AIDET RRR KQ+ HN+ H 
Sbjct: 543 DKEGFLRAERSLIQTIGRAARNVNGTAILYADRMTDSMKKAIDETERRRAKQIAHNEAHG 602

Query: 720 INPQSVKEKIMEVIDPILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
           I P+ V ++I ++ID +   D A   +      A+   +S+K+    +K L KQM   A 
Sbjct: 603 ITPRGVVKRIKDIIDGVYNVDDARAELKAAQEAAKYEDMSEKQASKEIKRLEKQMLDHAK 662

Query: 777 NLNFEEAARIRDEIKRLKSSPYFQGLDD 804
           NL FE+AA +RD++ +LKS  +    +D
Sbjct: 663 NLEFEKAAAVRDQLAKLKSQLFGASGED 690


>gi|13472362|ref|NP_103929.1| excinuclease ABC subunit B [Mesorhizobium loti MAFF303099]
 gi|81855589|sp|Q98I01|UVRB_RHILO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|14023108|dbj|BAB49715.1| excinuclease ABC subunit B [Mesorhizobium loti MAFF303099]
          Length = 870

 Score =  867 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 461/654 (70%), Positives = 553/654 (84%), Gaps = 1/654 (0%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M +D+ P+GDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMAKVIE  QRPA+++APN
Sbjct: 1   MVSDFEPAGDQPTAIKDLVEGVDNNDRTQVLLGVTGSGKTFTMAKVIEETQRPALILAPN 60

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+IEKESSINEQIDRMRHSA
Sbjct: 61  KTLAAQLYSEFKKFFPDNAVEYFVSYYDYYQPEAYVPRTDTFIEKESSINEQIDRMRHSA 120

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TRSLLER+D I+V+SVSCIYGIGSVE+Y+ M  Q++IGD ++Q+ LL+ LV QQYKRQDI
Sbjct: 121 TRSLLERDDVIIVASVSCIYGIGSVETYTAMTFQMQIGDRLDQRALLADLVAQQYKRQDI 180

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             +RG+FRV GD+IEIFP+HLED AWR+SMFG++IE+I+EF PLTGQK   ++++KIYAN
Sbjct: 181 NFVRGSFRVRGDTIEIFPAHLEDRAWRISMFGDEIEQITEFDPLTGQKTGELKSVKIYAN 240

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPRPTLN A+K IKEELK RL+ELE+ GRLLEAQRLEQR  +DLEMLE TGSC  I
Sbjct: 241 SHYVTPRPTLNQAIKSIKEELKQRLVELERAGRLLEAQRLEQRTRFDLEMLEATGSCAGI 300

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYLTGR PG+PPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYGF
Sbjct: 301 ENYSRYLTGRQPGDPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYGF 360

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPSCMDNRPLRFEEW+ +RP ++ VSATPG WE+EQ  G+  EQ+IRPTGL+DPPVE+R
Sbjct: 361 RLPSCMDNRPLRFEEWDAMRPLSVAVSATPGGWEMEQSGGVFAEQVIRPTGLIDPPVEVR 420

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A++QV+DV  EI    + G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERI
Sbjct: 421 PAKSQVDDVVGEIRETTKAGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 480

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI+RDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV
Sbjct: 481 EILRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 540

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + KVILYAD +T S++ A+ ET RRREKQ+E N  + I P+SVK +I +++D +  +D  
Sbjct: 541 DGKVILYADQVTGSMERAMAETNRRREKQMEWNAANGITPESVKSRISDILDSVYEKDHV 600

Query: 743 TTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             +IS       ++     KAHL ++ KQM  AA NL+FE+AARIRDEIKRL+ 
Sbjct: 601 RADISQFTDSAGAMMGNNLKAHLDAMEKQMRDAAANLDFEKAARIRDEIKRLRE 654


>gi|15616157|ref|NP_244462.1| excinuclease ABC subunit B [Bacillus halodurans C-125]
 gi|14195309|sp|Q9K6X9|UVRB_BACHD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|10176219|dbj|BAB07314.1| excinuclease ABC (subunit B) [Bacillus halodurans C-125]
          Length = 660

 Score =  866 bits (2238), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/656 (56%), Positives = 473/656 (72%), Gaps = 1/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI QL+ GI+  +K Q LLG TG+GKTFTM+ VI+ + +P +V+A
Sbjct: 5   FELVSQYKPQGDQPNAIRQLVAGINEGKKHQTLLGATGTGKTFTMSNVIQQVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ERND I+V+SVSCIYG+GS E Y +++  L+ G  +E+ +LL  LV  QY R 
Sbjct: 125 SATSALFERNDVIIVASVSCIYGLGSPEEYKELVCSLRTGMEIERNDLLRQLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EIFP+  ++   RV  FG++I+ I+E   LTG+       + I+
Sbjct: 185 DVNFTRGTFRVRGDVVEIFPASRDEQCIRVEFFGDEIDRITEVDALTGEIKGERNHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A K I+ EL+ RL EL   G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKLKRATKSIEAELEERLKELHDRGKLLEAQRLEQRTRYDLEMIHEMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  GE P TL ++ P+D L+ +DESHVTIPQI  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRKAGETPYTLLDFFPDDFLIIIDESHVTIPQIRAMYNGDQARKGVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEHKVHQAVFVSATPGPYELEHTPE-MVEQIIRPTGLLDPVIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+L+T LTK+MAEDLT+YL E  I+VRY+HSEVKTLE
Sbjct: 424 VRPIEGQIDDLIGEINERVAKNERVLVTTLTKKMAEDLTDYLKEVGIKVRYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIR LRLG F+VLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 484 RIEIIRQLRLGTFNVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YAD +TKS+Q+AIDET RRR  Q E+N+KH I P++++++I +VI    +  
Sbjct: 544 NANGYVIMYADRMTKSMQIAIDETKRRRSIQEEYNRKHGITPKTIEKRIPDVIKATAMVA 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 +  A +  +SKK+ +A ++ +  +M  AA  LNFE AA +RD I  LK+ 
Sbjct: 604 EDGEEYTSHAPKQKMSKKEREAVIERMEAEMKEAAKTLNFERAAELRDLILELKAE 659


>gi|196249375|ref|ZP_03148073.1| excinuclease ABC, B subunit [Geobacillus sp. G11MC16]
 gi|196211132|gb|EDY05893.1| excinuclease ABC, B subunit [Geobacillus sp. G11MC16]
          Length = 659

 Score =  866 bits (2237), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/658 (54%), Positives = 469/658 (71%), Gaps = 2/658 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             FQ+ + Y P GDQP AI +L+ G+    K Q LLG TG+GKTFT++ VI  + +P +V
Sbjct: 3   NRFQLVSSYQPQGDQPQAIEKLVDGLKRGVKHQTLLGATGTGKTFTISNVIAKVNKPTLV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++
Sbjct: 63  IAHNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKL 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY 
Sbjct: 123 RHSATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNTLLRRLVDIQYD 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RGTFRV GD +EIF +  ++   RV  FG++I+ I E   LTG+ +   E + 
Sbjct: 183 RNDIDFQRGTFRVRGDVVEIFQASRDEHCIRVEFFGDEIDRIREVDALTGEVLGEREHVA 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SH+VT    +  A+  I++EL+ RL EL ++G+LLEAQRLEQR  YDLEM+   G 
Sbjct: 243 IFPASHFVTREEKMKLAIANIEKELEERLAELREQGKLLEAQRLEQRTRYDLEMMREMGF 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L  R PG  P TL +Y P+D L+ +DESHVT+PQ+ GMY GD  RK  L 
Sbjct: 303 CSGIENYSRHLALRPPGSTPYTLLDYFPDDFLIIIDESHVTLPQLRGMYNGDRARKQVLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS +DNRPL F+E+       I VSATPG +ELE   G +VEQIIRPTGL+DP 
Sbjct: 363 DHGFRLPSALDNRPLTFDEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPT 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +++R    Q++D+  EI+   ++  R L+T LTK+MAEDLT+YL E   +V Y+HSE+KT
Sbjct: 422 IDVRPIAGQIDDLISEIHERVERNERTLVTTLTKKMAEDLTDYLKEAGFKVAYLHSEIKT 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LERIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 482 LERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN N  VI+YADTITKS+++AI ET RRR  Q E+NKKH I P+++++ I +VI     
Sbjct: 542 ARNANGHVIMYADTITKSMEIAIQETKRRRTIQEEYNKKHGIVPRTIQKDIRDVIRATYA 601

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +   T         +++K++ +  ++ L  +M  AA  L+FE AA++RD I  LK+ 
Sbjct: 602 AEETETY-EAKPTAANMTKQEREELIRQLEAEMKEAAKALDFERAAQLRDVIFELKAE 658


>gi|148259176|ref|YP_001233303.1| excinuclease ABC subunit B [Acidiphilium cryptum JF-5]
 gi|326402329|ref|YP_004282410.1| UvrABC system protein B [Acidiphilium multivorum AIU301]
 gi|146400857|gb|ABQ29384.1| Excinuclease ABC subunit B [Acidiphilium cryptum JF-5]
 gi|325049190|dbj|BAJ79528.1| UvrABC system protein B [Acidiphilium multivorum AIU301]
          Length = 728

 Score =  866 bits (2237), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/674 (62%), Positives = 536/674 (79%), Gaps = 4/674 (0%)

Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181
            + P R  +   H       ++ ++Y PSGDQP AIA L++G+   E+ Q+LLGVTGSGK
Sbjct: 11  PFIPERQGARPMH----KPLRVVSEYEPSGDQPGAIADLVRGVRQGERDQVLLGVTGSGK 66

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
           TFTMAKVIE +QRPA+++APNK LAAQLY+E K+FFP NAVEYFVSYYDYYQPEAYVPRT
Sbjct: 67  TFTMAKVIEQVQRPALILAPNKTLAAQLYAEMKSFFPENAVEYFVSYYDYYQPEAYVPRT 126

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           DTYIEK++ INE IDRMRH+AT++LLER D I+V+SVSCIYGIGSVE+YSQM+V+L++G 
Sbjct: 127 DTYIEKDAQINEAIDRMRHAATQALLERGDVIIVASVSCIYGIGSVETYSQMVVRLEVGG 186

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
           S+++  L  +LV+ QY+R D    RGTFR+ G++++IFPS  ED AWRV++FG++IE I+
Sbjct: 187 SIDRDRLAKALVELQYRRNDAAFQRGTFRLRGETVDIFPSQYEDRAWRVTLFGDEIESIA 246

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
           EF PLTG+K+ ++  I IYANSHYVTPRPTL  A+  IK EL+ RL E  + G+LLEA+R
Sbjct: 247 EFDPLTGEKVTDLPAIAIYANSHYVTPRPTLTQAIGKIKVELQQRLHEFTETGKLLEAER 306

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
           L+QR T+D+EM+ETTGSC+ IENYSRYL+GRNPG+PPPTLFEY+P+++LL VDESHVT+P
Sbjct: 307 LQQRTTFDIEMMETTGSCKGIENYSRYLSGRNPGDPPPTLFEYLPDNALLIVDESHVTVP 366

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           QI GM++GDF RK+ L+E+GFRLPSC+DNRPL+FEEW   RP T+ VSATPG WE+E+  
Sbjct: 367 QIGGMFKGDFARKSILSEFGFRLPSCIDNRPLKFEEWESFRPQTVFVSATPGPWEMERTG 426

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G+  EQ+IRPTGLVDP +++R    QV+D+  E    +Q G R+L+T LTKRMAEDLTEY
Sbjct: 427 GVFAEQVIRPTGLVDPVIDVRPVEHQVDDLLAECRATSQAGGRVLVTTLTKRMAEDLTEY 486

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L E  +RVRY+HS+V TLERIEIIRDLRLG +DVLVGINLLREGLDIPEC LVAILDADK
Sbjct: 487 LTENGVRVRYLHSDVDTLERIEIIRDLRLGAYDVLVGINLLREGLDIPECMLVAILDADK 546

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN 721
           EGFLRS TSL+QTIGRAARNV+ +VILYADT+T+S++ AIDET RRR KQ   N+ H I 
Sbjct: 547 EGFLRSATSLVQTIGRAARNVDGRVILYADTMTRSLKYAIDETERRRAKQTAWNEAHGIT 606

Query: 722 PQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
           PQSVK++I E++  +  +D  T     D+       K  K+ +  L K+M  AA +L FE
Sbjct: 607 PQSVKKQIGEIMHSVYEQDYVTVAPIRDSGATEFVGKDLKSTIAELEKRMRNAAADLEFE 666

Query: 782 EAARIRDEIKRLKS 795
           EAAR+RDEIKRL++
Sbjct: 667 EAARLRDEIKRLEA 680


>gi|114570710|ref|YP_757390.1| excinuclease ABC subunit B [Maricaulis maris MCS10]
 gi|114341172|gb|ABI66452.1| excinuclease ABC, B subunit [Maricaulis maris MCS10]
          Length = 721

 Score =  866 bits (2237), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/722 (58%), Positives = 539/722 (74%), Gaps = 20/722 (2%)

Query: 94  ISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQ 153
           +++ T+  ++ A    +      +     WTPHR             FQ  ++Y P GDQ
Sbjct: 1   MAKLTLDDTLTAPEDFVLDTLTSVTTAGEWTPHRPDRPEKSEGG-QRFQCVSEYSPKGDQ 59

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
           P AI +L+ G+   E+ Q+LLG TG+GKTFTMAK+IEA+QRPA+++APNK LAAQLY EF
Sbjct: 60  PQAIEELVAGLKDEERDQVLLGATGTGKTFTMAKIIEAVQRPALILAPNKTLAAQLYGEF 119

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           K+FFP+NAVEYFVSYYDYY PEAYVPRTDTYIEKESSINE IDRMRH+ATRS+LER+D I
Sbjct: 120 KSFFPNNAVEYFVSYYDYYMPEAYVPRTDTYIEKESSINEAIDRMRHAATRSILERDDVI 179

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           +V+SVSCIYGIGSVE+Y+ M  +LK GD V+ + +   LV  QY R D   IRGTFR+ G
Sbjct: 180 IVASVSCIYGIGSVETYTAMTFELKPGDIVDPRAITRQLVDLQYTRNDAAFIRGTFRIRG 239

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D++E+FP+H +D AWR+  FG+++E+I+EF PLTG+ +  ++++K YANSHYVTPRPTLN
Sbjct: 240 DNLEVFPAHYDDRAWRIGFFGDEVEQITEFDPLTGKTMTELKSVKFYANSHYVTPRPTLN 299

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A+  IK ELK RL  +E  G+LLEAQRL+QR  +DLEML  TGSC  IENYSRYLTGR 
Sbjct: 300 QAVVKIKAELKERLAWMEANGQLLEAQRLQQRTEFDLEMLGATGSCAGIENYSRYLTGRK 359

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
           PGEPPPTLFEYIPED+L+F DESHV+IPQ+  MY+GDF RK TL ++GFRLPSC+DNRPL
Sbjct: 360 PGEPPPTLFEYIPEDALVFADESHVSIPQLGAMYKGDFSRKKTLTDHGFRLPSCLDNRPL 419

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART----QVE 569
           +FEEW+ +RP TI VSATPG WEL Q  G+  EQ+IRPTGL+DPPVEIR   T    QV+
Sbjct: 420 KFEEWDAMRPQTISVSATPGQWELNQTGGVFTEQVIRPTGLIDPPVEIRPVSTDGASQVD 479

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           DV DE    A++G R L+T LTKRMAEDLTEY++E+ ++VRYMHS+V T+ERIE+IRDLR
Sbjct: 480 DVIDEARATAEKGFRTLVTTLTKRMAEDLTEYMHEQGLKVRYMHSDVDTVERIELIRDLR 539

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           LG +DVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAARN +SKVILY
Sbjct: 540 LGVYDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAARNADSKVILY 599

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
           AD IT S+Q A+DET RRR KQ+ HN++H I P ++   I ++++ ++   A    ++  
Sbjct: 600 ADRITGSMQRAMDETNRRRTKQIAHNEEHGITPTTITRGISDILEEVMESQAKGRGVAAK 659

Query: 750 AQQLS---------------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            ++                 ++     A +  L K+M  AA +L FEEAAR+RDE+ +L+
Sbjct: 660 GRKKGDGKPKGLREADQAAFVAGDNVVAVIADLEKRMREAAADLEFEEAARLRDEVLKLR 719

Query: 795 SS 796
             
Sbjct: 720 GE 721


>gi|144899714|emb|CAM76578.1| Helicase subunit of the DNA excision repair complex
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 703

 Score =  865 bits (2236), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/670 (62%), Positives = 526/670 (78%), Gaps = 1/670 (0%)

Query: 130 SINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI 189
              +       F++ +DY P+GDQP+AIA L+ G+ +RE+ Q+LLGVTGSGKTFTMA VI
Sbjct: 12  DRPDLPTGPADFKLVSDYQPAGDQPSAIATLVAGLEARERDQVLLGVTGSGKTFTMAHVI 71

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
              +RPA+V+A NK LAAQLY+E K+FFP NAVEYFVSYYDYYQPEAY+PRTDTYIEK+S
Sbjct: 72  ATTKRPALVLAHNKTLAAQLYAEMKSFFPDNAVEYFVSYYDYYQPEAYIPRTDTYIEKDS 131

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELL 309
            INEQIDRMRH+ATR+LLER D I+V+SVSCIYGIGSVESY++M ++L +G+S+++ ELL
Sbjct: 132 QINEQIDRMRHAATRALLERRDVIIVASVSCIYGIGSVESYARMTLKLVVGESIDRTELL 191

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369
             LV+ QY R D    RGTFRV GDS+EIFP H ED AW+VS++G++IE I+EF PLTG+
Sbjct: 192 KRLVELQYTRNDAAFERGTFRVRGDSVEIFPVHYEDRAWQVSLWGDEIEGIAEFDPLTGE 251

Query: 370 KIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD 429
           K   +  + +Y +SHYVTPRPT+  A+  IK ELK  +   E EG+LLEAQR+ +R T+D
Sbjct: 252 KTVRLSEVVVYPSSHYVTPRPTITAALAGIKAELKATVAHFEAEGKLLEAQRIRERTTFD 311

Query: 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG 489
           +EMLETTG C+SIENYSRYLTGR PGEPPPTLFEY+P D+LL VDESHVT+PQI GMYRG
Sbjct: 312 IEMLETTGHCKSIENYSRYLTGRKPGEPPPTLFEYLPPDALLIVDESHVTVPQIGGMYRG 371

Query: 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
           D+ RK+TL+E+GFRLPSC+DNRPL+FEEW+ +RP+++ VSATPG WE+++  G+  EQ+I
Sbjct: 372 DYARKSTLSEFGFRLPSCIDNRPLKFEEWDIMRPSSLFVSATPGPWEMDRTGGVFAEQVI 431

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           RPTGL+DP   IR    QV+D+  E+   A QG R L+TVLTKRMAEDLTEYL++  IRV
Sbjct: 432 RPTGLIDPICIIRPVEHQVDDLLAEVRQMAAQGHRTLVTVLTKRMAEDLTEYLHDHGIRV 491

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           RY+HS++ TLERIEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRSKT
Sbjct: 492 RYLHSDIDTLERIEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSKT 551

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           SLIQTIGRAARN++ +VILYAD +T S++ AIDET RRREKQ  +N  H I P+ +K+ +
Sbjct: 552 SLIQTIGRAARNIDGRVILYADKMTDSLKYAIDETNRRREKQQAYNVAHGITPEGIKKAV 611

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            +V++ +  +D  T + + D+           A    + K+M  AA +L FEEAAR+RDE
Sbjct: 612 GDVLESVYEKDYLTVD-TGDSGLAHGVGHNLAAVKADIEKRMKAAAADLEFEEAARLRDE 670

Query: 790 IKRLKSSPYF 799
           ++RL++    
Sbjct: 671 LRRLEAQELG 680


>gi|187927971|ref|YP_001898458.1| excinuclease ABC subunit B [Ralstonia pickettii 12J]
 gi|187724861|gb|ACD26026.1| excinuclease ABC, B subunit [Ralstonia pickettii 12J]
          Length = 696

 Score =  865 bits (2236), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/688 (54%), Positives = 492/688 (71%), Gaps = 5/688 (0%)

Query: 120 GKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGS 179
            ++ +PH            + FQ+   Y P+GDQP AI QL++ I      Q LLGVTGS
Sbjct: 5   SQVPSPHDESKFVTFEG--SPFQLYQPYPPAGDQPEAIRQLVENIGDGLSYQTLLGVTGS 62

Query: 180 GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239
           GKTFTMA VI  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP
Sbjct: 63  GKTFTMANVIAQVGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVP 122

Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
           + D +IEK+SSINE I++MR SAT+SLLER D ++V++VS IYGIG+   Y QMI+ L+ 
Sbjct: 123 QRDLFIEKDSSINEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPSEYHQMILTLRA 182

Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359
           GD V Q+++++ L+  QY R +    RGTFRV GD+++IFP+   ++A R+ +F +++E 
Sbjct: 183 GDKVSQRDVIARLIAMQYTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDEVES 242

Query: 360 ISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419
           +  F PLTG+  + +    +Y +SHYVTPR T+  A++ IK EL+ RL    KE +L+EA
Sbjct: 243 LQLFDPLTGRVRQKIPRFTVYPSSHYVTPRETVLRAIETIKAELRERLDFFYKENKLVEA 302

Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT 479
           QRLEQR  +DLEML+  G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHV 
Sbjct: 303 QRLEQRTRFDLEMLQELGFCKGIENYSRHLSGSAPGEPPPTLVDYLPPDALMFLDESHVL 362

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           I Q++GMY GD  RK TLAEYGFRLPS +DNRPL+F E+         VSATPG +E + 
Sbjct: 363 IGQLNGMYNGDRARKETLAEYGFRLPSALDNRPLKFAEFETKMRQVTFVSATPGDYEKKT 422

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
               +VEQ++RPTGLVDP +E+R A TQV+D+  EI++  + G R+L+T LTKRMAE LT
Sbjct: 423 AGTEVVEQVVRPTGLVDPIIEVRPATTQVDDLLSEIHVRVEAGERVLVTTLTKRMAEQLT 482

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           E+L E  ++VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDA
Sbjct: 483 EFLSENGVKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDA 542

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
           DKEGFLR++ SLIQTIGRAARNVN   ILYAD +T S++ AI ET RRR KQ+ HN+ H 
Sbjct: 543 DKEGFLRAERSLIQTIGRAARNVNGTAILYADRMTDSMKKAIGETERRRAKQIAHNEAHG 602

Query: 720 INPQSVKEKIMEVIDPILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
           I P+ V ++I ++ID +   D A   +      A+   +S+K+    +K L KQM   A 
Sbjct: 603 ITPRGVVKRIKDIIDGVYNVDDARAELKAAQEAAKYEDMSEKQASKEIKRLEKQMLDHAK 662

Query: 777 NLNFEEAARIRDEIKRLKSSPYFQGLDD 804
           NL FE+AA +RD++ +LKS  +    +D
Sbjct: 663 NLEFEKAAAVRDQLAKLKSQLFGASGED 690


>gi|83745732|ref|ZP_00942789.1| Excinuclease ABC subunit B [Ralstonia solanacearum UW551]
 gi|83727422|gb|EAP74543.1| Excinuclease ABC subunit B [Ralstonia solanacearum UW551]
          Length = 786

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/754 (50%), Positives = 503/754 (66%), Gaps = 18/754 (2%)

Query: 57  RKNAAKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSV---QALARLIQSD 113
           R    K + +  +  +  +     +          R +   + T       A+  L    
Sbjct: 39  RNRGEKCVPVRYKRPSGRRATLHDRLQSLPPSPSARGLRVTSTTVRAHPQAAMTDL---- 94

Query: 114 NPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLL 173
                  ++ +P+            + FQ+   Y P+GDQP AI QLL+GI      Q L
Sbjct: 95  ------SQVPSPYDESKFVAFEG--SPFQLYQPYPPAGDQPGAIRQLLEGIGDGLSYQTL 146

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           LGVTGSGKT+TMA VI    RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQ
Sbjct: 147 LGVTGSGKTYTMANVIAQAGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQ 206

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
           PEAYVP+ D +IEK+SS+NE I++MR SAT+SLLER D ++V++VS IYGIG+   Y QM
Sbjct: 207 PEAYVPQRDLFIEKDSSVNEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPTEYHQM 266

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
           I+ L+ GD + Q+++++ L+  QY R +    RGTFRV GD+I+IFP+   ++A R+ +F
Sbjct: 267 ILTLRTGDRISQRDVIARLIAMQYTRNETDFQRGTFRVRGDTIDIFPAEHAEMAVRLELF 326

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
            ++I+ +  F PLTG+  + +    +Y +SHYVTPR T+  A+  IK EL+ RL    KE
Sbjct: 327 DDEIDSLQLFDPLTGRVRQKIPRFTVYPSSHYVTPRETVLRAIGAIKAELRERLDFFYKE 386

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
            +L+EAQRLEQR  +DLEML+  G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+
Sbjct: 387 NKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGAQPGEPPPTLVDYLPPDALMFL 446

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
           DESHV I Q +GMY GD  RK TL+EYGFRLPS +DNRPL+F E+       + VSATP 
Sbjct: 447 DESHVLIGQFNGMYNGDRARKETLSEYGFRLPSALDNRPLKFAEFEGKMRQVVFVSATPA 506

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E ++    +VEQ++RPTGLVDP + +R A TQV+D+  EI+   + G R+L+T LTKR
Sbjct: 507 DYEKQRAGDEVVEQVVRPTGLVDPIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKR 566

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAE LTE+L E  ++VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  L
Sbjct: 567 MAEQLTEFLSEHGVKVRYLHSDIDTVERVEILRDLRLGTFDVLVGINLLREGLDIPEVSL 626

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           VAILDADKEGFLR++ SLIQTIGRAARNVN   ILY D IT S++ AI ET RRR KQ+ 
Sbjct: 627 VAILDADKEGFLRAERSLIQTIGRAARNVNGTAILYGDRITDSMRRAIGETERRRAKQIA 686

Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQ 770
           HN+ H I P+ V ++I ++ID +   D A   +      A+   +S+K+    +K L KQ
Sbjct: 687 HNEAHGITPRGVVKRIKDIIDGVYNVDDARAELKAAQEAAKYEDMSEKQVGKEIKRLEKQ 746

Query: 771 MHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
           M   A NL FE+AA +RD++ +LKS  +    +D
Sbjct: 747 MLDHAKNLEFEKAAAVRDQLAKLKSQVFGASGED 780


>gi|163794442|ref|ZP_02188413.1| Helicase subunit of the DNA excision repair complex [alpha
           proteobacterium BAL199]
 gi|159180166|gb|EDP64689.1| Helicase subunit of the DNA excision repair complex [alpha
           proteobacterium BAL199]
          Length = 739

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/680 (62%), Positives = 536/680 (78%), Gaps = 1/680 (0%)

Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183
                 S          FQ+ +D+ P+GDQP AIA L+ G+ ++E  Q+LLGVTGSGKTF
Sbjct: 22  VAPDLKSNAARQDASVPFQVVSDFEPAGDQPRAIADLIAGVQAQELDQVLLGVTGSGKTF 81

Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243
           T+A VI+ ++RP +++APNK LAAQLY E K+FFPHNAVEYFVSYYDYYQPEAYVPRTDT
Sbjct: 82  TIAHVIQEVKRPTLILAPNKTLAAQLYGEMKSFFPHNAVEYFVSYYDYYQPEAYVPRTDT 141

Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303
           ++EKESS+NEQIDRMRHSATR+LLER+D I+V+SVSCIYGIG+VE+Y  MIV LK+GD++
Sbjct: 142 FVEKESSVNEQIDRMRHSATRALLERHDVIIVASVSCIYGIGAVETYGNMIVTLKVGDTI 201

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           ++  ++  LV+ QYKR D    RGTFRV GDS+EIFP+HLED AWR+S+FG+++E I EF
Sbjct: 202 DRTNVMRRLVELQYKRNDASFHRGTFRVRGDSLEIFPAHLEDRAWRLSLFGDELEAIQEF 261

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
            PLTG+K   +E I+++ANSHYVTP+PTL  A + IK ELK RL EL + G+LLEAQRLE
Sbjct: 262 DPLTGEKTAALEQIRVFANSHYVTPKPTLQQANRLIKVELKERLEELNRAGKLLEAQRLE 321

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
           QR T+DLEM+E TGSC  IENYSRYL+GRNPGEPPPTLFEY+PED+LL VDESHVT+PQI
Sbjct: 322 QRTTFDLEMMEATGSCAGIENYSRYLSGRNPGEPPPTLFEYLPEDALLVVDESHVTVPQI 381

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
            GM++GD+ RK TL+EYGFRLPSC+DNRPL+FEEW  +RP T+ VSATPG WELE+  G+
Sbjct: 382 GGMFKGDYARKYTLSEYGFRLPSCLDNRPLKFEEWEDMRPQTVFVSATPGPWELERTGGV 441

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
            VEQ++RPTGL+DP  EIR  + QV+DV  E + AA +G R+L+TVLTK+MAE LTEY+ 
Sbjct: 442 FVEQLVRPTGLIDPVCEIRPTKNQVDDVIAECHDAAAKGHRVLITVLTKKMAEALTEYMN 501

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           E  I+VRY+HS+V TLERIEIIRDLRLG FDVL+GINLLREGLDIPEC LV ILDADKEG
Sbjct: 502 EAGIKVRYIHSDVDTLERIEIIRDLRLGIFDVLIGINLLREGLDIPECALVCILDADKEG 561

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           +LRSKTSL+QTIGRAARN++ +V+LYAD IT S++ A+ ET RRR++Q+E+N  H I P+
Sbjct: 562 YLRSKTSLVQTIGRAARNIDGRVLLYADRITASLEYALGETERRRQRQVEYNTAHGITPE 621

Query: 724 SVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
           SVK+ I +++  +  E      +    ++  L  K  +  ++ L  +M  AA +L FE+A
Sbjct: 622 SVKKNIGDILSSVY-ERGDHVTVDTGTEEGELVDKPIRQIIEELEARMKAAAADLEFEDA 680

Query: 784 ARIRDEIKRLKSSPYFQGLD 803
           AR+RDEIKRL+++      D
Sbjct: 681 ARLRDEIKRLEAAELGVTTD 700


>gi|23016719|ref|ZP_00056472.1| COG0556: Helicase subunit of the DNA excision repair complex
           [Magnetospirillum magnetotacticum MS-1]
          Length = 704

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/680 (60%), Positives = 520/680 (76%), Gaps = 1/680 (0%)

Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183
            P          +    F++ +DY P+GDQP AI +L  G+ + E+ Q+LLGVTGSGKTF
Sbjct: 5   LPFDFMERPPLPEGDVEFKIVSDYQPAGDQPQAIDELSAGVVAEERDQVLLGVTGSGKTF 64

Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243
           TMA VI   +RPA+V+APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAY+PRTDT
Sbjct: 65  TMAHVIARTKRPALVLAPNKTLAAQLYAEMKGFFPDNAVEYFVSYYDYYQPEAYIPRTDT 124

Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303
           YIEK+S++NEQIDRMRH+ATR+LLER D I+V+SVSCIYGIGSVESY++M V LK+G+ +
Sbjct: 125 YIEKDSAVNEQIDRMRHAATRALLERRDVILVASVSCIYGIGSVESYARMTVALKVGECI 184

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           ++ +LL  LV+ QY R D    RGTFRV GD++EIFP H ED AWR+S+FG++IE I+EF
Sbjct: 185 DRSDLLKRLVELQYTRNDAAFERGTFRVRGDAVEIFPVHYEDRAWRLSLFGDEIEAINEF 244

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
            PLTG+K  ++  + +Y +SHYVTPRPT+  A+K IK ELK  L     EG+LLEAQRLE
Sbjct: 245 DPLTGEKTCSLSEVTVYPSSHYVTPRPTITQAIKGIKAELKETLERFHAEGKLLEAQRLE 304

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
           QR  +DLEMLETTG C+SIENYSRYLTGR PG+PPPTLFEY+PED+LL VDESHVT+PQI
Sbjct: 305 QRTNFDLEMLETTGHCKSIENYSRYLTGRRPGDPPPTLFEYLPEDALLIVDESHVTVPQI 364

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
            GMYRGDF+RK+ LAE+GFRLPSC+DNRPL+FEEW  +RP T+ VSATPG WE+E+  G+
Sbjct: 365 GGMYRGDFNRKSVLAEFGFRLPSCIDNRPLKFEEWELMRPQTVYVSATPGPWEMERTGGV 424

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
             EQ+IRPTGL+DP   +R    QV+D+  E+   A+ G R L+T LTKRMAEDLTEY++
Sbjct: 425 FTEQVIRPTGLIDPVCIVRPVEHQVDDLLGEVRQMARLGNRTLVTTLTKRMAEDLTEYMH 484

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +  +RVRY+HS++ TLERIEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEG
Sbjct: 485 DNGVRVRYLHSDIDTLERIEIIRDLRLGAFDVLIGINLLREGLDIPECSLVAILDADKEG 544

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           FLRSKTSLIQTIGRAARN++ +VILYAD +T S++ A+ ET RRR+KQ  +N  H I P+
Sbjct: 545 FLRSKTSLIQTIGRAARNIDGRVILYADKMTASLEYALAETNRRRDKQQAYNAAHGITPE 604

Query: 724 SVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
            +++ + +V+D +   D  T        +  +           + K+M  AA +L FEEA
Sbjct: 605 GIRKAVSDVMDSVYEADYVTVGTGDSGIKHGV-GHNLATVKADIEKRMKAAAADLEFEEA 663

Query: 784 ARIRDEIKRLKSSPYFQGLD 803
           AR+RDE++RL++      +D
Sbjct: 664 ARLRDELRRLEALDLGIEVD 683


>gi|229541499|ref|ZP_04430559.1| excinuclease ABC, B subunit [Bacillus coagulans 36D1]
 gi|229325919|gb|EEN91594.1| excinuclease ABC, B subunit [Bacillus coagulans 36D1]
          Length = 666

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/662 (55%), Positives = 476/662 (71%), Gaps = 2/662 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI QL+ GI + +K+Q LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 6   FELVSKYKPEGDQPEAIRQLVDGIRAGKKIQTLLGATGTGKTFTVSNVIKEVNKPTLVIA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK++SIN++ID++RH
Sbjct: 66  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDASINDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ERND I+++SVSCIYG+GS E Y +++V L+ G  +E+ +LL  LV  QY R 
Sbjct: 126 SATSALFERNDVIIIASVSCIYGLGSPEEYRELVVSLRTGMEIERNQLLRRLVDIQYARN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ I + + + I+
Sbjct: 186 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEIIGDRDHVAIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A++ I+ EL+ RL EL   G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 246 PASHFVTRNEKLQIAIRNIEAELEERLKELRDNGKLLEAQRLEQRTRYDLEMMREMGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D LL +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 306 GIENYSRHLALRPPGSTPYTLLDYFPKDFLLVIDESHVTLPQIRGMFNGDQARKQVLVDH 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       I VSATPG +ELE     +VEQIIRPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLRFEEFEKHISQMICVSATPGPYELEHTP-KMVEQIIRPTGLLDPEIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  I+V+Y+HSEVKTLE
Sbjct: 425 VRPIEGQIDDLLGEIQDRIEKNERVLVTTLTKKMAEDLTDYLKEVGIKVQYLHSEVKTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+D +VGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RIEIIRDLRLGKYDCIVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD IT S++ AI ET RRR  Q  +NKKH I P+++++ I + I      +
Sbjct: 545 NANGKVIMYADRITDSMEKAISETKRRRTVQEAYNKKHGITPKTIQKDIRDTIHATYAAE 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
            AT     +  +  L+K++    +  L ++M  AA  L+FE+AAR RD +  LK+     
Sbjct: 605 DATPY-EAEETKKPLTKEERIRMIAELEEKMKEAAKALDFEQAARYRDALLELKAGDDHN 663

Query: 801 GL 802
           G+
Sbjct: 664 GI 665


>gi|50513706|pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
           Mutant Y96a Revealing A Novel Fold For Domain 2
 gi|50513707|pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
           Mutant Y96a Revealing A Novel Fold For Domain 2
          Length = 658

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/656 (55%), Positives = 473/656 (72%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y P GDQP AIA+L+ G+    K Q LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 5   FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFPHNAVEYFVSYYDY QPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYAQPEAYVPQTDTYIEKDAKINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ +   E + I+
Sbjct: 185 DIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  +G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D L+ VDESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       I VSATPG +ELE   G +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    ++  R L+T LTK+MAEDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTITKS+++AI ET RRR  Q E+N+KH I P++VK++I +VI      +
Sbjct: 544 NANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 +  A   +++K++ +  +++L  +M  AA  L+FE AA++RD I  LK+ 
Sbjct: 604 ETEMYEAKPA--AAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKAE 657


>gi|222054331|ref|YP_002536693.1| excinuclease ABC, B subunit [Geobacter sp. FRC-32]
 gi|221563620|gb|ACM19592.1| excinuclease ABC, B subunit [Geobacter sp. FRC-32]
          Length = 663

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/658 (55%), Positives = 487/658 (74%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AI +L +GI   ++ Q+LLGVTGSGKTFTMA +I  + RPA+++A
Sbjct: 3   FRLSSDYKPRGDQPQAIDELTQGIIRGDRDQVLLGVTGSGKTFTMANIIANINRPALILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++ID+MRH
Sbjct: 63  PNKTLAAQLYGEFKELFPDNAVEYFVSYYDYYQPEAYLPTTDTFIEKDSSINDEIDKMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL R D I+V+SVSCIYGIGS  SY +M +    GD V + E L  LV  QY+R 
Sbjct: 123 SATRSLLTRRDVIIVASVSCIYGIGSPASYQEMHIFFHQGDDVPRDEFLKKLVAIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +E+FP+H ++ A R+  FG+ +E ISE  PL GQ I+ +    IY
Sbjct: 183 DVDFHRGTFRVRGDIVEVFPAHDDERALRIEFFGDTVEAISEIDPLRGQVIQKLAKCAIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  + TL+ A++ I+ EL+ R+    ++  LLEAQR+EQR  +D+EM+E  G CQ
Sbjct: 243 PASHYVANKETLDRAIEQIRLELEERIRYFREQNMLLEAQRIEQRTFFDIEMMEEMGFCQ 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GR+ GEPP TL +Y P D +LF+DESH+T+ Q+ GMYRGD  RK TL  Y
Sbjct: 303 GIENYSRHFDGRSAGEPPYTLIDYFPGDFVLFIDESHITVSQVGGMYRGDRSRKETLVNY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+      T+ VSATP  +EL+Q  G++VEQ+IRPTGL+DP VE
Sbjct: 363 GFRLPSALDNRPLNFQEFTKKLNQTVYVSATPAEYELKQAGGVVVEQVIRPTGLLDPQVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D+  E+ L  ++G R+L+T LTKRMAE+LT+Y  E  I+VRY+HS++ T++
Sbjct: 423 VRPASGQVDDLLHEVRLTVEKGERVLVTTLTKRMAEELTDYYRELGIKVRYLHSDIDTIQ 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLG+FDVLVGINLLREGLDIPE  LVAI DADKEGFLRS+ SLIQT GRAAR
Sbjct: 483 RMQIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAIFDADKEGFLRSERSLIQTCGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++  VI+YAD++T+S+Q  ID T++RR+ Q E+N+++NI PQSVK++I  +++ +   D
Sbjct: 543 NLSGCVIMYADSVTRSMQACIDVTSKRRQIQQEYNRENNITPQSVKKQIRNILESVEEHD 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
             T  ++ +  +  ++ K     +K LRK+M  AA  L+FE+AA +RD IK+L+    
Sbjct: 603 YVTVPLAAETMEEYVAVKDIPKLVKKLRKEMLAAAKELDFEKAAGLRDRIKKLEDQEL 660


>gi|83592469|ref|YP_426221.1| excinuclease ABC subunit B [Rhodospirillum rubrum ATCC 11170]
 gi|83575383|gb|ABC21934.1| Excinuclease ABC subunit B [Rhodospirillum rubrum ATCC 11170]
          Length = 733

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/694 (60%), Positives = 536/694 (77%), Gaps = 4/694 (0%)

Query: 112 SDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ 171
               +L+   +  P               F++ +DY P+GDQP AIA+LL+G+ ++++ Q
Sbjct: 12  GGRLILRAMTMLLPLFERPPA---GPRAEFRLASDYQPAGDQPQAIAELLRGLAAQDRDQ 68

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           +LLGVTGSGKTFTMA+VI  M RP +++APNK LAAQLY EFKNFFP NAVEYFVSYYDY
Sbjct: 69  VLLGVTGSGKTFTMAQVIAEMGRPTLILAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDY 128

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           YQPEAYVPRTDTYIEK+SSINEQIDRMRH+ATR+LLER D I+V+SVSCIYGIGSVESYS
Sbjct: 129 YQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALLERRDVIIVASVSCIYGIGSVESYS 188

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           +MI+ +K+G ++ + +LL +LV+ Q+ R DI   RG FRV GDS+EIFP+H ED AWRVS
Sbjct: 189 RMIIPIKVGTTLPRADLLKALVELQFTRNDIAFTRGMFRVRGDSVEIFPAHYEDRAWRVS 248

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           ++G++IE + EF PLTG+   +++ + +Y  SH+VTPRP L+ A++ IK ELK  L    
Sbjct: 249 LWGDEIESVREFDPLTGEITASLDEVTVYPASHHVTPRPALSQAVRTIKAELKETLARFY 308

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
            +G++LEAQRLEQR T+DLEM+E TG C+SIENYSR+LTGR PG+PPPTLFEY+PED+LL
Sbjct: 309 DQGKVLEAQRLEQRTTFDLEMIEATGHCKSIENYSRHLTGRRPGDPPPTLFEYLPEDALL 368

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           FVDESHV +PQI GM+RGDF+RK+ LAE+GFRLPSC+DNRPL+FEEW+ +RP +I VSAT
Sbjct: 369 FVDESHVAVPQIGGMFRGDFNRKSVLAEFGFRLPSCVDNRPLKFEEWDVMRPPSIFVSAT 428

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
           PG WELE+  G++ EQ+IRPTGLVDP   IR    QV+D+  E+   A +G R+L+T LT
Sbjct: 429 PGRWELERTGGVVAEQVIRPTGLVDPVCIIRPVEAQVDDLLGEVKACAARGERVLVTTLT 488

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           KRM+EDLTEYL E+ +RVRYMHS+++TLERIEIIRDLRLG FDVLVGINLLREGLDIPEC
Sbjct: 489 KRMSEDLTEYLTEQGVRVRYMHSDIETLERIEIIRDLRLGAFDVLVGINLLREGLDIPEC 548

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
            LVAILDADKEGFLRS+TSLIQTIGRAARNV  +VILYAD +T S+  AI+ET+RRR++Q
Sbjct: 549 ALVAILDADKEGFLRSRTSLIQTIGRAARNVGGRVILYADKMTDSLTFAIEETSRRRQRQ 608

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771
            ++N  H I P++V+ +I +V+  +  +D  T    +      L  K  + HL  L K+M
Sbjct: 609 QDYNAAHGITPETVRSRISDVLSSVYEKDYVTVTTGVSGDNQ-LVGKSLREHLADLDKRM 667

Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             AA +L FEEA R+RDEI+RL++       D  
Sbjct: 668 RAAAADLEFEEAGRLRDEIRRLEALDLGLPGDAG 701


>gi|330993416|ref|ZP_08317351.1| UvrABC system protein B [Gluconacetobacter sp. SXCC-1]
 gi|329759446|gb|EGG75955.1| UvrABC system protein B [Gluconacetobacter sp. SXCC-1]
          Length = 747

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/685 (61%), Positives = 526/685 (76%), Gaps = 1/685 (0%)

Query: 111 QSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKV 170
           +     +    +    +        K +  F++ + Y P+GDQP AIA+L+ G+   E+ 
Sbjct: 9   KKKTTDIDPADMPVLFQPERQAAKPK-VNRFRVHSPYEPAGDQPTAIAELVSGVEGGERD 67

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           Q+LLGVTGSGKTFTMAK+IEA Q+P +V+APNK LAAQLY+E K FFP NAVEYFVSYYD
Sbjct: 68  QVLLGVTGSGKTFTMAKIIEATQKPTLVLAPNKTLAAQLYAEMKQFFPDNAVEYFVSYYD 127

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
           YYQPEAYVPR+DTYIEK+S INEQIDRMRH+AT++LLERND I+V+SVSCIYGIGSVE+Y
Sbjct: 128 YYQPEAYVPRSDTYIEKDSQINEQIDRMRHAATQALLERNDVIIVASVSCIYGIGSVETY 187

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           S+M+V+L++G  +++ +L+  LV+ QY+R D    RGTFRV G++I++FP   ED AWR+
Sbjct: 188 SRMVVKLEVGGEIDRDKLIRGLVELQYRRNDAAFQRGTFRVRGETIDVFPVQNEDRAWRI 247

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
           S+FG++I+EISEF PLTG+K  ++E+I IYANSHYVTPRPTL  AM  IK+EL+  L   
Sbjct: 248 SLFGDEIDEISEFDPLTGEKTGDLESISIYANSHYVTPRPTLTQAMTGIKQELRETLARF 307

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +EG+LLEA+RL+QR T+DLEM+ETTG C+ IENYSRYL+GR PGEPPPTLFEY+PED+L
Sbjct: 308 NEEGKLLEAERLQQRTTFDLEMIETTGVCKGIENYSRYLSGRAPGEPPPTLFEYLPEDAL 367

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
           L VDESHVT+PQI GM RGD  RK+ LAE+GFRLPSC+DNRPL F EW+  RP T+ VSA
Sbjct: 368 LIVDESHVTVPQIGGMERGDHARKSVLAEFGFRLPSCLDNRPLTFAEWDSYRPQTVFVSA 427

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
           TPG WE+ + +G+  EQ+IRPTGL+DP   +R    QV+D+  E       G R+L+T L
Sbjct: 428 TPGPWEMRRTEGVFAEQVIRPTGLIDPVTIVRPVEHQVDDLLAECRQTIADGGRVLVTTL 487

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKRMAEDLTEY+ E  IRVRY+HS+V TLERIEIIRDLRLG FDVL+GINLLREGLDIPE
Sbjct: 488 TKRMAEDLTEYMNEAGIRVRYLHSDVDTLERIEIIRDLRLGAFDVLIGINLLREGLDIPE 547

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
           C LVAILDADKEGFLRS+TSLIQTIGRAARNV+ +V+LYAD +T S+  AI+ET RRREK
Sbjct: 548 CSLVAILDADKEGFLRSRTSLIQTIGRAARNVDGRVLLYADRMTDSLAYAIEETARRREK 607

Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQ 770
           Q   N++H I PQSV++ I E I  +  +D  T + + D     +  K  KA +  L K+
Sbjct: 608 QNLWNEEHGITPQSVRKHIGEAISSVFEQDYVTVSPTADGSVQEMVGKDYKAAIAELEKK 667

Query: 771 MHLAADNLNFEEAARIRDEIKRLKS 795
           M  A+  L FE AA +RDEI+RL++
Sbjct: 668 MRAASAELEFETAAHLRDEIRRLEA 692


>gi|149927877|ref|ZP_01916128.1| excinuclease ABC subunit B [Limnobacter sp. MED105]
 gi|149823499|gb|EDM82730.1| excinuclease ABC subunit B [Limnobacter sp. MED105]
          Length = 687

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/676 (55%), Positives = 491/676 (72%), Gaps = 2/676 (0%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
               S   + F++   Y P+GDQP AI +L++G++  E  Q LLGVTGSGKTFTMA VI 
Sbjct: 3   PGFISYPNSPFELYQPYSPAGDQPTAIEKLVEGVNDGEVFQTLLGVTGSGKTFTMANVIA 62

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
              RPA+V+APNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SS
Sbjct: 63  QTGRPALVLAPNKTLAAQLYAEMREFFPKNAVEYFVSYYDYYQPEAYVPSRDLFIEKDSS 122

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE I++MR SAT+SLLER D I+V +VSCIYGIG    Y  MI+ ++ GD + Q+++L 
Sbjct: 123 INEHIEQMRLSATKSLLERRDTIIVGTVSCIYGIGDPSDYHAMILSIRHGDKLSQRDILK 182

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            L+  QYKR D+   RGTFRV GD+I+++P+   ++A R+ +F ++I+ I  F PLTG+ 
Sbjct: 183 RLIAMQYKRNDLDFTRGTFRVRGDTIDVYPAEHSELAVRIDLFDDEIDGIQLFDPLTGKI 242

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
            + +    IY +SHYVTPR T+  A++ IKEEL+ +L    K G+L+EAQRLEQR  +DL
Sbjct: 243 RQKLPRFTIYPSSHYVTPRATVLRAIETIKEELREQLDFFVKTGKLVEAQRLEQRTRFDL 302

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML   G C+ IENYSR+++G  PGEPPPTL +Y+P+D L+ +DESHVTI Q+ GMYRGD
Sbjct: 303 EMLAELGFCKGIENYSRHMSGAAPGEPPPTLIDYLPKDGLMIIDESHVTIGQLGGMYRGD 362

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL  +GFRLPS MDNRPLRFEE+      T+ VSATP ++E E   G +VEQ++R
Sbjct: 363 RSRKETLVNFGFRLPSAMDNRPLRFEEFESKMRQTVFVSATPSNYEKEHS-GQVVEQVVR 421

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DP +E+R A TQV+D+  EI+   + G R+L+T LTKRMAEDLT+YL +  +RVR
Sbjct: 422 PTGLIDPVIEVRPATTQVDDLLSEIHERTRAGDRVLVTTLTKRMAEDLTDYLSDNGVRVR 481

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ S
Sbjct: 482 YLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERS 541

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARN+N K ILYAD +T S++LAI ETTRRR KQ+E N ++ I P+ V ++I 
Sbjct: 542 LIQTIGRAARNLNGKAILYADRVTNSMELAIGETTRRRNKQIEFNTENGITPRGVNKQIK 601

Query: 731 EVIDPILLEDAATTNISIDA-QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           E+ID +   +A+    +  A +   L +K+    +K L K M   A NL FE+AA+ RD+
Sbjct: 602 ELIDGVFDPNASKQRKADKAMEVAPLGEKQLAKEIKRLEKLMLDHAKNLEFEKAAQARDQ 661

Query: 790 IKRLKSSPYFQGLDDS 805
           +  LK   +    D +
Sbjct: 662 LGLLKEQLFGSKGDSN 677


>gi|329849766|ref|ZP_08264612.1| excinuclease ABC, B subunit [Asticcacaulis biprosthecum C19]
 gi|328841677|gb|EGF91247.1| excinuclease ABC, B subunit [Asticcacaulis biprosthecum C19]
          Length = 723

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/682 (63%), Positives = 536/682 (78%), Gaps = 7/682 (1%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTG 178
           +   W PHR             F++   Y P+GDQP AIA+L+ G+++RE  Q+LLGVTG
Sbjct: 27  HPVTWVPHRPERPAKSEGG-KRFRLAAPYEPAGDQPTAIAELVGGVNAREHDQVLLGVTG 85

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           SGKT+TMAK+IE  QRPA+++A NK LAAQL+SEFK+FFP NAVEYFVSYYDYYQPEAYV
Sbjct: 86  SGKTYTMAKIIEQTQRPALILAHNKTLAAQLFSEFKSFFPDNAVEYFVSYYDYYQPEAYV 145

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLK 298
           PRTDTYIEK+SS+NEQIDRMRHSATR++LER+D IVV+SVSCIYGIGSVE+Y+ M  +LK
Sbjct: 146 PRTDTYIEKDSSVNEQIDRMRHSATRAILERDDVIVVASVSCIYGIGSVETYTAMTFELK 205

Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358
           +G S+++ +L + LV  QYKR D    RGTFR  GD IEIFP+H ED AWR++MFG++IE
Sbjct: 206 VGQSIDEGQLRADLVALQYKRNDAAFERGTFRRRGDVIEIFPAHYEDRAWRINMFGDEIE 265

Query: 359 EISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE 418
            + EF PLTG+KI +++ +K+YA SHYVTPRPTLN A+  IK+ELK+RL +L  EG+LLE
Sbjct: 266 SMHEFDPLTGRKIVDLQDLKVYAASHYVTPRPTLNQAIDGIKKELKLRLDQLHGEGKLLE 325

Query: 419 AQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHV 478
           AQRLEQR T+DLEM++ TG+C  IENYSRYLTGR  G PPPT FEY+P+++LLFVDESHV
Sbjct: 326 AQRLEQRTTFDLEMMQATGACAGIENYSRYLTGRGAGAPPPTFFEYLPDNALLFVDESHV 385

Query: 479 TIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
           ++PQI GMYRGDF RK+ LAEYGFRLPSCMDNRPL+FEEW+ +RP ++ VSATPG WE+E
Sbjct: 386 SVPQIGGMYRGDFARKSVLAEYGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPGKWEME 445

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSAR----TQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           +  G+  EQ+IRPTGL+DPPVEIR        QV+DV  E+   A+ G R L+TVLTK+M
Sbjct: 446 RTAGVFAEQVIRPTGLIDPPVEIRPVHKDGFNQVDDVIAEVREVAKHGYRSLITVLTKKM 505

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE+LT+Y++E+ IRVRYMHS+++TLERIEIIRDLRLG FDVL+GINLLREGLDIPECG V
Sbjct: 506 AENLTDYMHEQGIRVRYMHSDIETLERIEIIRDLRLGAFDVLIGINLLREGLDIPECGFV 565

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
           AILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD +T S++ A+ ET RRREKQ+ +
Sbjct: 566 AILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRMTGSMERALAETARRREKQMAY 625

Query: 715 NKKHNINPQSVKEKIMEVID-PILLEDAATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMH 772
           N +H I P+SVK  I +++D P    D     +   +           +A LK L  +M 
Sbjct: 626 NVEHGITPESVKRGISDILDSPFEKGDRVQIPMGVAEKDSKPFMGSNFQATLKDLETKMR 685

Query: 773 LAADNLNFEEAARIRDEIKRLK 794
            AA NL FE AAR+RDEIKRLK
Sbjct: 686 EAAGNLEFETAARLRDEIKRLK 707


>gi|83312902|ref|YP_423166.1| excinuclease ABC subunit B [Magnetospirillum magneticum AMB-1]
 gi|82947743|dbj|BAE52607.1| Helicase subunit of the DNA excision repair complex
           [Magnetospirillum magneticum AMB-1]
          Length = 683

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/655 (63%), Positives = 519/655 (79%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AIA+L  G+ + E+ Q+LLGVTGSGKTFTMA VI   +RPA+V+A
Sbjct: 3   FKIVSDYQPAGDQPQAIAELSAGVDADERDQVLLGVTGSGKTFTMAHVIARTRRPALVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAY+PRTDTYIEK+S++NEQIDRMRH
Sbjct: 63  PNKTLAAQLYAEMKGFFPDNAVEYFVSYYDYYQPEAYIPRTDTYIEKDSAVNEQIDRMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATR+LLER D I+V+SVSCIYGIGSVESY++M V LK+G+S+++ +LL  LV+ QY R 
Sbjct: 123 AATRALLERRDVILVASVSCIYGIGSVESYARMTVALKVGESIDRSDLLKRLVELQYTRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD++EIFP H ED AWR+S+FG++IE I+EF PLTG+K  ++  + +Y
Sbjct: 183 DAAFERGTFRVRGDAVEIFPVHYEDRAWRLSLFGDEIEAINEFDPLTGEKTCSLSEVTVY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHYVTPRPT+  A+K IK ELK  L     EG+LLEAQRLEQR  +DLEMLETTG C+
Sbjct: 243 PSSHYVTPRPTITQAIKGIKAELKETLERFHAEGKLLEAQRLEQRTNFDLEMLETTGHCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
           SIENYSRYLTGR PG+PPPTLFEY+PED+LL VDESHVT+PQI GMYRGDF+RK+ LAE+
Sbjct: 303 SIENYSRYLTGRRPGDPPPTLFEYLPEDALLIVDESHVTVPQIGGMYRGDFNRKSVLAEF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPL+FEEW  +RP T+ VSATPG WE+E+  G+  EQ+IRPTGL+DP   
Sbjct: 363 GFRLPSCIDNRPLKFEEWELMRPQTVYVSATPGPWEMERTGGVFTEQVIRPTGLIDPVCI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  E+   A+ G R L+T LTKRMAEDLTEY+++  +RVRY+HS++ TLE
Sbjct: 423 VRPVEHQVDDLLGEVRQMARLGNRTLVTTLTKRMAEDLTEYMHDNGVRVRYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRSKTSLIQTIGRAAR
Sbjct: 483 RIEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSKTSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ +VILYAD +T S+  A+ ET RRREKQ  +N  H I P+ +++ + +V+D +   D
Sbjct: 543 NIDGRVILYADKMTASLDYALAETNRRREKQQAYNALHGITPEGIRKAVSDVMDSVYEAD 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T   + D+           +    + K+M  AA +L FEEAAR+RDE++RL++
Sbjct: 603 YVTVG-TGDSGLAHGVGHNLASVKADIEKRMKAAAADLEFEEAARLRDELRRLEA 656


>gi|83859420|ref|ZP_00952941.1| excinuclease ABC subunit B [Oceanicaulis alexandrii HTCC2633]
 gi|83852867|gb|EAP90720.1| excinuclease ABC subunit B [Oceanicaulis alexandrii HTCC2633]
          Length = 711

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/689 (61%), Positives = 539/689 (78%), Gaps = 13/689 (1%)

Query: 120 GKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGS 179
              WTPHR    +        F+M +DY P+GDQP AIA+L++GI  +E+ Q+LLGVTGS
Sbjct: 23  PANWTPHRPDRPDKSEGGQK-FRMVSDYEPAGDQPHAIAELVEGISQQERDQVLLGVTGS 81

Query: 180 GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239
           GKTFTMAKVIE +QRPA+++APNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP
Sbjct: 82  GKTFTMAKVIEKVQRPALILAPNKTLAAQLYGEFKDFFPHNAVEYFVSYYDYYQPEAYVP 141

Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
           RTDTYIEKES+INE IDRMRH+ATR++LER+D I+V+SVSCIYGIGSVE+Y+ M+  L++
Sbjct: 142 RTDTYIEKESTINEAIDRMRHAATRAILERDDVIIVASVSCIYGIGSVETYTAMVFDLEV 201

Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359
           G   + +E++  LV  QY R D    RGTFR+ GD +EIFP+H +  AWR+S FG++IE 
Sbjct: 202 GAEKDPREVMRDLVSLQYTRNDAAFQRGTFRLRGDVLEIFPAHYDARAWRISFFGDEIER 261

Query: 360 ISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419
           I EF  LTG  I ++E +++YANSHYVTPRPTLN A+  IK+EL  RL  +E  G+LLEA
Sbjct: 262 IQEFEVLTGAPIGDLEKVRVYANSHYVTPRPTLNQAIVGIKKELAERLTWMEANGKLLEA 321

Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT 479
           QRL+QR  +DLEMLE TGSC  IENYSRYLTGR PGEPPPT+FEY+P+++L+F+DESHVT
Sbjct: 322 QRLQQRTEFDLEMLEATGSCMGIENYSRYLTGRKPGEPPPTMFEYLPDNALVFIDESHVT 381

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           +PQ+  MY+GDF+RK TLAE+GFRLPSCMDNRPL+FEEW  +RP T+ VSATPG WEL Q
Sbjct: 382 VPQLGAMYKGDFNRKRTLAEHGFRLPSCMDNRPLKFEEWEAMRPQTLHVSATPGKWELNQ 441

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSART----QVEDVYDEINLAAQQGLRILLTVLTKRMA 595
             G+  EQ+IRPTGL+DPPVE+R  +T    QV+D+ +E    A++G R L+T LTK+MA
Sbjct: 442 TGGVFTEQVIRPTGLIDPPVEVRPVQTETSSQVDDIIEEARKTAEKGYRTLITTLTKKMA 501

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLTEY++E+ ++VRYMHS++ T+ERIE+IRDLRLG++DVLVGINLLREGLDIPECGLV 
Sbjct: 502 EDLTEYMHEQGLKVRYMHSDIDTVERIELIRDLRLGEYDVLVGINLLREGLDIPECGLVG 561

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS+TSL+QTIGRAARN +++VILYAD IT S++ A++ET RRREKQ+ HN
Sbjct: 562 ILDADKEGFLRSETSLVQTIGRAARNADARVILYADRITGSMERAMEETERRREKQIAHN 621

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDA--------ATTNISIDAQQLSLSKKKGKAHLKSL 767
           ++H I P++V   + +++  ++ E A           + ++   Q        KA +  L
Sbjct: 622 QEHGITPRTVTRGVSDILQGVMEETAKGRGSRRDKKRDRAVAEDQARFEPNNLKAAIADL 681

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            K+M  AA +L FEEAAR+RDEIK+L+ +
Sbjct: 682 EKRMREAAADLEFEEAARLRDEIKKLEGA 710


>gi|53729175|ref|ZP_00134015.2| COG0556: Helicase subunit of the DNA excision repair complex
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208147|ref|YP_001053372.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae L20]
 gi|189037973|sp|A3N031|UVRB_ACTP2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|126096939|gb|ABN73767.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 673

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/667 (56%), Positives = 489/667 (73%), Gaps = 6/667 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           SK    F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + R
Sbjct: 2   SKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNR 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PA+++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQ
Sbjct: 62  PAMLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQ 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  ++Q+E+L+ L +
Sbjct: 122 IEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQLGAIIDQREILARLAE 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    R TFRV G+ I+IFP+  +++A RV +F ++IE +S F PLTG  +  V
Sbjct: 182 LQYTRNDQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKV 241

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+ 
Sbjct: 242 PRYTIYPKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMN 301

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK
Sbjct: 302 ELGYCSGIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARK 361

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL
Sbjct: 362 ETLVQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+R   TQV+DV  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS
Sbjct: 422 LDPIIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHS 481

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 482 DIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 541

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D
Sbjct: 542 IGRAARNLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGITPQALNKKVGELLD 601

Query: 735 ------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                 P   + A              S+K+ +  LK L +QM   A +L FE+AA +RD
Sbjct: 602 IGQTDKPKRGKQAVKVEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAAVRD 661

Query: 789 EIKRLKS 795
           +I +LK+
Sbjct: 662 KIGQLKA 668


>gi|322514289|ref|ZP_08067347.1| excision endonuclease subunit UvrB [Actinobacillus ureae ATCC
           25976]
 gi|322119827|gb|EFX91848.1| excision endonuclease subunit UvrB [Actinobacillus ureae ATCC
           25976]
          Length = 673

 Score =  864 bits (2231), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/667 (56%), Positives = 488/667 (73%), Gaps = 6/667 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           SK    F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + R
Sbjct: 2   SKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNR 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PA+++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQ
Sbjct: 62  PAMLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQ 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  ++Q+E+L+ L +
Sbjct: 122 IEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAE 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    R TFRV G+ I+IFP+  +++A RV +F ++IE +S F PLTG  +  V
Sbjct: 182 LQYTRNDQAFQRSTFRVRGEVIDIFPAESDEMALRVELFDDEIESLSLFDPLTGHSLGKV 241

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+ 
Sbjct: 242 PRYTIYPKTHYVTPRERILNAIEEIKQELVERCEYFIKENKLLEEQRITQRTQFDIEMMN 301

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK
Sbjct: 302 ELGYCSGIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARK 361

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL
Sbjct: 362 ETLVQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+R   TQV+DV  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS
Sbjct: 422 LDPIIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHS 481

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 482 DIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 541

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D
Sbjct: 542 IGRAARNLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIIPQALNKKVGELLD 601

Query: 735 ------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                 P   + A              S+K+ +  LK L +QM   A  L FE+AA +RD
Sbjct: 602 IGQTDKPKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKELEFEKAAAVRD 661

Query: 789 EIKRLKS 795
           +I +LK+
Sbjct: 662 KIGQLKA 668


>gi|165976082|ref|YP_001651675.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|165876183|gb|ABY69231.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 673

 Score =  864 bits (2231), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/667 (56%), Positives = 489/667 (73%), Gaps = 6/667 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           SK    F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + R
Sbjct: 2   SKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNR 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PA+++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQ
Sbjct: 62  PAMLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQ 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  ++Q+E+L+ L +
Sbjct: 122 IEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAE 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    R TFRV G+ I+IFP+  +++A RV +F ++IE +S F PLTG  +  V
Sbjct: 182 LQYTRNDQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKV 241

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+ 
Sbjct: 242 PRYTIYPKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMN 301

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK
Sbjct: 302 ELGYCSGIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARK 361

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL
Sbjct: 362 ETLVQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+R   TQV+DV  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS
Sbjct: 422 LDPIIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHS 481

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 482 DIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 541

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D
Sbjct: 542 IGRAARNLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGITPQALNKKVGELLD 601

Query: 735 ------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                 P   + A              S+K+ +  LK L +QM   A +L FE+AA +RD
Sbjct: 602 IGQTDKPKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAAVRD 661

Query: 789 EIKRLKS 795
           +I +LK+
Sbjct: 662 KIGQLKA 668


>gi|259415323|ref|ZP_05739244.1| excinuclease ABC, B subunit [Silicibacter sp. TrichCH4B]
 gi|259348553|gb|EEW60315.1| excinuclease ABC, B subunit [Silicibacter sp. TrichCH4B]
          Length = 788

 Score =  864 bits (2231), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/678 (63%), Positives = 531/678 (78%), Gaps = 2/678 (0%)

Query: 118 KNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVT 177
           K   +                  F MQT + P+GDQP AIA+L +G+   E+ Q+LLG T
Sbjct: 66  KTLPMMADRAPERREKLEGGKN-FVMQTAFSPAGDQPTAIAELSQGVFDGERDQVLLGAT 124

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G+GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP NAVEYFVS+YDYYQPEAY
Sbjct: 125 GTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSFYDYYQPEAY 184

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
           VPR+DTYIEKES INEQIDRMRHSATR+LLER+D I+++SVSCIYGIGSVE+YS M   L
Sbjct: 185 VPRSDTYIEKESQINEQIDRMRHSATRALLERDDVIIIASVSCIYGIGSVETYSAMTQDL 244

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
            +G   +Q+++++ LV QQYKR D    RG+FRV GD++EIFP+HLED AW++S FG ++
Sbjct: 245 NVGQDYDQRQIMADLVAQQYKRNDQAFQRGSFRVRGDTLEIFPAHLEDRAWKLSFFGEEL 304

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           E I+EF PLTG++  + E I++YANSHYVTP+PTLN A+  IK EL+ RL  L  EG+LL
Sbjct: 305 EAITEFDPLTGERTGSFEKIRVYANSHYVTPKPTLNQAVISIKNELRQRLDNLVSEGKLL 364

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESH 477
           EAQRLEQR  +D+EMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESH
Sbjct: 365 EAQRLEQRTNFDIEMLEATGHCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESH 424

Query: 478 VTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537
           V++PQI GMY+GD  RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+
Sbjct: 425 VSVPQIGGMYKGDHRRKMTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEM 484

Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           EQ  G+  EQ+IRPTGL+DP VEIR    QV+D+ DEI     +G R L TVLTKRMAED
Sbjct: 485 EQAGGVFAEQVIRPTGLLDPEVEIRPVGMQVDDLLDEIRAVTARGFRTLATVLTKRMAED 544

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTEYL+E+ I+VRYMHS++ TLERIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAIL
Sbjct: 545 LTEYLHEQGIKVRYMHSDIDTLERIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAIL 604

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           DADKEGFLRS+TSLIQTIGRAARN + KVI+YAD IT S++ AI ET RRREKQ+ +N++
Sbjct: 605 DADKEGFLRSETSLIQTIGRAARNADGKVIMYADRITGSMERAIAETNRRREKQIAYNEE 664

Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
           H I P++VK+ + +V+  +   D   + ++    +  L     +AHL  LR+QM  AA+N
Sbjct: 665 HGITPETVKKNVDDVLAGLYQGDTDMSRVTATIDK-PLHGANFEAHLDGLREQMRKAAEN 723

Query: 778 LNFEEAARIRDEIKRLKS 795
           L FEEAAR+RDE+KRL++
Sbjct: 724 LEFEEAARLRDEVKRLEA 741


>gi|9910887|sp|P56981|UVRB_BACCA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
          Length = 658

 Score =  864 bits (2231), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/656 (56%), Positives = 474/656 (72%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y P GDQP AIA+L+ G+    K Q LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 6   FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 66  HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY R 
Sbjct: 126 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ +   E + I+
Sbjct: 186 DIDF-RGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGKVLGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  +G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D L+ VDESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       I VSATPG +ELE   G +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    ++  R L+T LTK+MAEDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTITKS+++AI ET RRR  Q E+N+KH I P++VK++I +VI      +
Sbjct: 544 NANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 +  A   +++K++ +  +++L  +M  AA  L+FE AA++RD I  LK+ 
Sbjct: 604 ETEMYEAKPA--AAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKAE 657


>gi|7766820|pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
           Complex With Atp
          Length = 657

 Score =  864 bits (2231), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/656 (56%), Positives = 474/656 (72%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y P GDQP AIA+L+ G+    K Q LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 5   FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ +   E + I+
Sbjct: 185 DIDF-RGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGKVLGEREHVAIF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL  +G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 244 PASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D L+ VDESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 304 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       I VSATPG +ELE   G +VEQIIRPTGL+DP ++
Sbjct: 364 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPTID 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    ++  R L+T LTK+MAEDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 423 VRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTITKS+++AI ET RRR  Q E+N+KH I P++VK++I +VI      +
Sbjct: 543 NANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYAAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 +  A   +++K++ +  +++L  +M  AA  L+FE AA++RD I  LK+ 
Sbjct: 603 ETEMYEAKPA--AAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKAE 656


>gi|254294193|ref|YP_003060216.1| excinuclease ABC subunit B [Hirschia baltica ATCC 49814]
 gi|254042724|gb|ACT59519.1| excinuclease ABC, B subunit [Hirschia baltica ATCC 49814]
          Length = 742

 Score =  864 bits (2231), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/740 (56%), Positives = 539/740 (72%), Gaps = 31/740 (4%)

Query: 84  ISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQM 143
            S + K ++ +SE        A A L +    LL    +W PHR       S+    F++
Sbjct: 4   TSKTPKSSKSVSE------APASAFLYEGAEELLH-PSVWKPHRPERQWEKSEGGKLFEL 56

Query: 144 QTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNK 203
           +++Y P+GDQP AI +L+ G+ + EK Q+LLGVTGSGKT+TMA+VIE  QRPA+++A NK
Sbjct: 57  KSEYEPAGDQPEAIKELVTGVETDEKDQVLLGVTGSGKTYTMAQVIERTQRPALILAHNK 116

Query: 204 ILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
            LAAQLY+EFKNFFP+N+VEYFVSYYDYY PEAYVPRTDTYIEKESSINE IDRMRH+AT
Sbjct: 117 TLAAQLYAEFKNFFPNNSVEYFVSYYDYYMPEAYVPRTDTYIEKESSINEAIDRMRHAAT 176

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
           R++LER+D I+V+SVSCIYGIGSVE+YS M   L+   + + +++   LV  QY R D+ 
Sbjct: 177 RAVLERDDVIIVASVSCIYGIGSVETYSAMTFVLEEAQTRDPRDIAQDLVALQYTRNDVA 236

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
             RGTFR+ GD ++I+P+H ED AW++S FG++IE I EF PLTG+K + +  IK+YANS
Sbjct: 237 FGRGTFRIKGDVLDIWPAHQEDRAWKISFFGDEIETIVEFDPLTGKKSKPLGKIKVYANS 296

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
           H+VTPRPTLN A+K+IKEE+K  +   E EG+LLEAQR++QR  +D+EM+  TGSC  IE
Sbjct: 297 HHVTPRPTLNQAVKHIKEEMKQTVARFEAEGKLLEAQRIQQRTEFDMEMMVATGSCAGIE 356

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           NYSRYL+GR PGEPPPT FEY+P+++L+FVDESH TIPQI  MY+GD  RK TLAE+GFR
Sbjct: 357 NYSRYLSGRKPGEPPPTFFEYLPDNALVFVDESHQTIPQIGAMYKGDRSRKNTLAEFGFR 416

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           LPSC DNRPL+FEEW  +RP T+ VSATPG WELEQ QG+  EQIIRPTGL+DPPVE+R 
Sbjct: 417 LPSCKDNRPLKFEEWEAMRPQTVHVSATPGKWELEQTQGVFTEQIIRPTGLIDPPVEVRP 476

Query: 564 AR----TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
                  QV+DV  E+    Q+G R L+T LTK+M+EDLT+Y++E+ ++VRYMHS++ T+
Sbjct: 477 VSKDGANQVDDVIAEVKNTTQRGFRSLVTTLTKKMSEDLTDYMHEQGVKVRYMHSDIDTV 536

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLRLG FD L+GINLLREGLDIPEC  V ILDADKEGFLRS+TSL+QTIGRAA
Sbjct: 537 ERIEIIRDLRLGVFDCLIGINLLREGLDIPECAFVGILDADKEGFLRSETSLVQTIGRAA 596

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN  ++VILYAD +T S++ A+ ETTRRR+ Q  HN+KH I P++V   + ++++ I  +
Sbjct: 597 RNSEARVILYADKVTGSMERAMSETTRRRDIQRAHNEKHGITPKTVVRAVEDIMEDIGGK 656

Query: 740 DAATTNI----------------SIDAQQLSLSK----KKGKAHLKSLRKQMHLAADNLN 779
             A +++                   A   S++           + SL K+M  AA NL 
Sbjct: 657 KNAASDLVPNGRDPNKRSAKGVQESKAGVASMAPGGKGHNLAGVIASLEKEMREAAANLE 716

Query: 780 FEEAARIRDEIKRLKSSPYF 799
           FE AAR+RDE+K+L+     
Sbjct: 717 FETAARLRDEVKQLRDEELG 736


>gi|307245520|ref|ZP_07527607.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307254476|ref|ZP_07536312.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258934|ref|ZP_07540665.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306853579|gb|EFM85797.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306862526|gb|EFM94484.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306866958|gb|EFM98815.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 673

 Score =  864 bits (2231), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/667 (56%), Positives = 489/667 (73%), Gaps = 6/667 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           SK    F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + R
Sbjct: 2   SKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNR 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PA+++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQ
Sbjct: 62  PAMLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQ 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  ++Q+E+L+ L +
Sbjct: 122 IEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAE 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    R TFRV G+ I+IFP+  +++A RV +F ++IE +S F PLTG  +  V
Sbjct: 182 LQYTRNDQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKV 241

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+ 
Sbjct: 242 PRYTIYPKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMN 301

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK
Sbjct: 302 ELGYCSGIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARK 361

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL
Sbjct: 362 ETLVQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+R   TQV+DV  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS
Sbjct: 422 LDPIIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHS 481

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 482 DIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 541

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D
Sbjct: 542 IGRAARNLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGITPQALNKKVGELLD 601

Query: 735 ------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                 P   + A              S+K+ +  LK L +QM   A +L FE+AA +RD
Sbjct: 602 IGQTDKPKRGKQAVKVEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAEVRD 661

Query: 789 EIKRLKS 795
           +I +L++
Sbjct: 662 KIGQLRA 668


>gi|239828307|ref|YP_002950931.1| excinuclease ABC subunit B [Geobacillus sp. WCH70]
 gi|239808600|gb|ACS25665.1| excinuclease ABC, B subunit [Geobacillus sp. WCH70]
          Length = 659

 Score =  864 bits (2231), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/656 (56%), Positives = 477/656 (72%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AIA+L++GI    K Q LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 5   FELVSAYKPQGDQPKAIAKLVEGIRKGVKHQTLLGATGTGKTFTISNVIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY+R 
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ I   E + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEIIAEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL ++G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRLAIENIEKELEERLRELREQGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D L+ +DESHVT+PQI GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIIDESHVTLPQIRGMYNGDRARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       I VSATPG +ELE     +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPE-VVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+   ++  R L+T LTK+MAEDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIHERIKRNERTLVTTLTKKMAEDLTDYLKEVGIKVAYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+GK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRMGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTITKS+++AI+ET RRR  Q  +NKKH I PQ+VK++I +VI      +
Sbjct: 544 NANGHVIMYADTITKSMEIAINETKRRRAIQEAYNKKHGIVPQTVKKEIRDVIRATYAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +       ++KK+ +  +  L K+M  AA  L+FE AA++RD I  LK+ 
Sbjct: 604 EKETYDT-KPSYGKMAKKEREKLIADLEKEMKEAAKALDFERAAQLRDIIFELKAE 658


>gi|58040289|ref|YP_192253.1| excinuclease ABC subunit B [Gluconobacter oxydans 621H]
 gi|58002703|gb|AAW61597.1| Excinuclease ABC subunit B [Gluconobacter oxydans 621H]
          Length = 759

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/715 (59%), Positives = 539/715 (75%), Gaps = 8/715 (1%)

Query: 81  QSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITF 140
           +  +  +      +S   M    ++ +    +  PL +    + P R  +     K    
Sbjct: 5   RKRVGKALAVRDALSHLGMMAIKESSSVRNATAMPLTQ----FLPERQPAKAKTRK---- 56

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P+GDQP AIA+L++G+   E+ Q+LLGVTGSGKTF+MAKVIEA Q+P +++A
Sbjct: 57  FVVKSDYEPAGDQPTAIAELVQGVEGGERDQVLLGVTGSGKTFSMAKVIEATQKPTLILA 116

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK+S INEQIDRMRH
Sbjct: 117 PNKTLAAQLYGEMKQFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKDSQINEQIDRMRH 176

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++LLERND I+V+SVSCIYGIGSVE+YS+M+V+L++G S+++  L+ +LV+ QY+R 
Sbjct: 177 AATQALLERNDVIIVASVSCIYGIGSVETYSKMVVRLEVGGSIDRDRLIKALVELQYRRN 236

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP   ED AWRVS+FG++I++I EF PLTG K  ++  I +Y
Sbjct: 237 DAAFERGTFRVRGEQIDIFPVQNEDRAWRVSLFGDEIDQIVEFDPLTGNKTADLAEISVY 296

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           ANSHYVTPRPTLN AM  IK EL+ RL +  +EG+LLEA+RL QR T+DLEM+ETTG+C+
Sbjct: 297 ANSHYVTPRPTLNQAMIGIKNELRQRLAQFTEEGKLLEAERLSQRTTFDLEMIETTGACK 356

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PG+PPPTLFEY+PED+LL VDESHVT+PQI GM RGD  RK+ L++Y
Sbjct: 357 GIENYSRYLSGRGPGDPPPTLFEYLPEDALLIVDESHVTVPQIGGMERGDRARKSVLSDY 416

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPL F EWN  RP +I VSATPG WE+EQ  G+  EQIIRPTGL+DP  +
Sbjct: 417 GFRLPSCIDNRPLAFGEWNAFRPQSIFVSATPGPWEMEQTGGVFAEQIIRPTGLIDPVTD 476

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  E   A  +G R+L+T LTKRMAEDLT+YL E  ++VRY+HS+V TLE
Sbjct: 477 VRPVEGQVDDLLHECREAISKGGRVLVTTLTKRMAEDLTDYLGEAGVKVRYLHSDVDTLE 536

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG FDVLVGINLLREGLDIPEC +VAILDADKEGFLRSKTSLIQTIGRAAR
Sbjct: 537 RIEIIRDLRLGAFDVLVGINLLREGLDIPECSVVAILDADKEGFLRSKTSLIQTIGRAAR 596

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V+LYAD +T S++ AI+ET RRR KQ E N+ H I P +V+ KI + +  +  +D
Sbjct: 597 NVDGRVLLYADKMTDSLKYAIEETARRRAKQTEWNEAHGITPMTVRSKIGDALSSVFEQD 656

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T              K   A ++ L K+M  AA NL+FE+AAR+RDE+KRL++
Sbjct: 657 YVTVAPDGSGDTEQFVGKSLPATIQDLEKRMREAAANLDFEQAARLRDEVKRLEA 711


>gi|304319965|ref|YP_003853608.1| putative excinuclease abc subunit b protein [Parvularcula
           bermudensis HTCC2503]
 gi|303298868|gb|ADM08467.1| putative excinuclease abc subunit b protein [Parvularcula
           bermudensis HTCC2503]
          Length = 724

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 442/697 (63%), Positives = 546/697 (78%), Gaps = 21/697 (3%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTG 178
               W+PHR             F++ +DY P+GDQPAAIA+L+ GI ++E+ Q+LLGVTG
Sbjct: 23  EPATWSPHRPSRPEKMEGG-RAFRVSSDYEPAGDQPAAIAELVAGIAAQEQDQVLLGVTG 81

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           SGKTFTMAK+IEA QRPA+++A NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYV
Sbjct: 82  SGKTFTMAKIIEATQRPALILAHNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYV 141

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLK 298
           PRTDTYIEKES+INEQIDRMRHSATR+LLER+D I+++SVSCIYGIGSVE+Y++M   L+
Sbjct: 142 PRTDTYIEKESTINEQIDRMRHSATRALLERDDVIIIASVSCIYGIGSVETYTEMTFTLE 201

Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358
           +G++VE+K+LL+ LV  QYKR D+   RG FR  GD +EIFP+HLEDVAWR+S+FG++IE
Sbjct: 202 VGETVERKQLLADLVALQYKRNDVAFARGAFRARGDIVEIFPAHLEDVAWRISLFGDEIE 261

Query: 359 EISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE 418
            I+EF PLTGQKI ++  IK+YANSHYVTPRPTL  A++ IK+EL   L  L +EG+L+E
Sbjct: 262 AITEFDPLTGQKIADLPRIKMYANSHYVTPRPTLRRAIEGIKKELAATLPILHQEGKLIE 321

Query: 419 AQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHV 478
           AQRLEQR+ +D+EM+E TGSCQ IENYSRYLTGR PG PPPTLFEY+PE++L+F DESHV
Sbjct: 322 AQRLEQRVQFDIEMMEATGSCQGIENYSRYLTGRKPGHPPPTLFEYLPENALVFCDESHV 381

Query: 479 TIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
           T+PQI  M+RGDF RK TLAEYGFRLPSCMDNRPL+FEEW+ +RP T+ VSATPG WEL+
Sbjct: 382 TVPQIGAMFRGDFARKRTLAEYGFRLPSCMDNRPLKFEEWDAMRPQTVHVSATPGPWELD 441

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSAR----TQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           +  G+ VEQ+IRPTGL+DPPVEIR        QV+DV DE    A QG R L+T LTK+M
Sbjct: 442 RTGGVFVEQVIRPTGLIDPPVEIRPVTTGQVNQVDDVIDECKKVAAQGGRSLVTTLTKKM 501

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AEDLTEY++E+ +RVRYMHS+V T+ERIEIIRDLRLG FDVL+GINLLREGLDIPEC  V
Sbjct: 502 AEDLTEYMHEQGVRVRYMHSDVDTIERIEIIRDLRLGVFDVLIGINLLREGLDIPECQFV 561

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
            ILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD +T S++ A+ ET RRREKQL H
Sbjct: 562 GILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADGMTGSMERALQETERRREKQLAH 621

Query: 715 NKKHNINPQSVKEKIMEVIDPILLEDAA-------TTNISIDAQQLSLSKKKGKAHLKS- 766
           N  H I P++VK KI E+ D       A       +  ++  A  +   +++ +A++   
Sbjct: 622 NAAHGITPKTVKAKIAEITDSDDEATKAAAGTSFTSERLTKGATGMGAMREEREAYIPGA 681

Query: 767 --------LRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                   L K+M  AA NL FEEAA +RDEI++L++
Sbjct: 682 NMRSHLGALEKRMREAAANLEFEEAATLRDEIRKLEA 718


>gi|149186162|ref|ZP_01864476.1| excinuclease ABC subunit B [Erythrobacter sp. SD-21]
 gi|148830193|gb|EDL48630.1| excinuclease ABC subunit B [Erythrobacter sp. SD-21]
          Length = 731

 Score =  863 bits (2229), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/695 (61%), Positives = 534/695 (76%), Gaps = 2/695 (0%)

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169
           I+           + PH+             F++ +DY PSGDQP AIA+L       E+
Sbjct: 6   IRRGLEEPDTTGEFVPHKPARPEKSMPG-KQFKLVSDYTPSGDQPTAIAELTASAREDEQ 64

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
            Q+LLGVTGSGKTFTMAKVIE +QRPA+++APNKILAAQL+ EFK+FFP NAVEYFVSYY
Sbjct: 65  TQVLLGVTGSGKTFTMAKVIEELQRPALILAPNKILAAQLFGEFKSFFPENAVEYFVSYY 124

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
           DYYQPEAYVPR+DTYIEKESS+NE IDRMRHSATR+LLER+D I+V+SVSC+YGIGSVE+
Sbjct: 125 DYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVIIVASVSCLYGIGSVET 184

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           YS MI  +    +V+Q+EL+  LV  QYKR D G  RG FRV GDS+EIFPSH ED+AWR
Sbjct: 185 YSAMIFDIVKDSTVDQRELIRKLVALQYKRNDAGFSRGNFRVRGDSLEIFPSHYEDMAWR 244

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           +S FG++IEEISEF PLTG+K  +++ +++YANSHYVTP PT+  A + IK EL  RL E
Sbjct: 245 ISFFGDEIEEISEFDPLTGKKGASLDKVRVYANSHYVTPGPTMKQASEAIKFELTERLKE 304

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
           L ++GRLLEAQRLEQR  +DLEM+  TGSC  IENYSR+LTGR PGEPPPTLFEY+PE++
Sbjct: 305 LHEDGRLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLPENA 364

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVDESH T+PQI  M +GD  RK TLAEYGFRLPSC+DNRPLRF EW+ +RP T  VS
Sbjct: 365 LLFVDESHQTVPQIGAMAKGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQTFCVS 424

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
           ATPG+WE+EQ  G+  EQ+IRPTGL+DPPVEI+    QV+D  +E    A+ G R L+T 
Sbjct: 425 ATPGTWEMEQTGGVFAEQVIRPTGLIDPPVEIKPVEDQVQDCIEECKKTAKMGYRTLVTT 484

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           LTKRMAEDLTE+++E  ++VRYMHS+V+TLERIE+IRDLRLG +DVLVGINLLREGLDIP
Sbjct: 485 LTKRMAEDLTEFMHEAGVKVRYMHSDVETLERIELIRDLRLGVYDVLVGINLLREGLDIP 544

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           ECGLV ILDADKEGFLRS+TSL+QTIGRAARNV  +VILYAD IT S++ A+ ET RRRE
Sbjct: 545 ECGLVCILDADKEGFLRSETSLVQTIGRAARNVEGRVILYADRITGSMERAMAETDRRRE 604

Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRK 769
           KQ  +N++H I P+++K  I +++     +D  T   + D ++ +L     +A+++ L K
Sbjct: 605 KQKAYNEEHGITPKTIKRNIADIVAHTAAQDGVTVE-TGDDERNNLVGHNLRAYIEDLEK 663

Query: 770 QMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
           +M  AA +L FEEA R+RDEI+ L++     G ++
Sbjct: 664 RMRKAAADLEFEEAGRLRDEIRHLENDELGLGDEE 698


>gi|295690822|ref|YP_003594515.1| excinuclease ABC, subunit B [Caulobacter segnis ATCC 21756]
 gi|295432725|gb|ADG11897.1| excinuclease ABC, B subunit [Caulobacter segnis ATCC 21756]
          Length = 756

 Score =  863 bits (2229), Expect = 0.0,   Method: Composition-based stats.
 Identities = 444/679 (65%), Positives = 539/679 (79%), Gaps = 7/679 (1%)

Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181
           +WTPHR    +        F++ ++Y P+GDQP AIA+L++GI S ++ Q+LLGVTGSGK
Sbjct: 36  LWTPHRPARPDKTEGG-RKFKLVSEYQPAGDQPTAIAELVQGIESGDQDQVLLGVTGSGK 94

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
           TFTMAKVIEA QRPA+++APNK LAAQLYSE K+FFP NAVEYFVSYYDYYQPEAYVPRT
Sbjct: 95  TFTMAKVIEATQRPALILAPNKTLAAQLYSEMKSFFPENAVEYFVSYYDYYQPEAYVPRT 154

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           DTYIEK+SSINEQIDRMRHSATR++LER+D IVV+SVSCIYGIGSVE+Y+ M   L++G 
Sbjct: 155 DTYIEKDSSINEQIDRMRHSATRAILERDDVIVVASVSCIYGIGSVETYTAMTFTLEVGQ 214

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
            V++K+L++ LV QQYKR D    RG FR  GD+IEIFP+H ED AWRV+MFG+++E +S
Sbjct: 215 KVDEKQLIADLVAQQYKRNDQAFERGAFRRRGDTIEIFPAHYEDRAWRVTMFGDEVEALS 274

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
           EF  LTG+K  ++E IK+YANSH+VTPRPTL  A+  I++ELK RL  L   G+LLEAQR
Sbjct: 275 EFDTLTGKKTADLEMIKVYANSHHVTPRPTLRQAIIAIRQELKERLEWLTANGKLLEAQR 334

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
           LEQR T+DLEM+ETTGSC  IENYSRYL+GR PGEPPPT FEYIP+++LLF DESH T+P
Sbjct: 335 LEQRTTFDLEMIETTGSCAGIENYSRYLSGRKPGEPPPTFFEYIPDNALLFTDESHQTVP 394

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           QI  MY+GD +RK TLAEYGFRLPS +DNRPL+FEEW+ +RP ++ VSATP +WE+E+  
Sbjct: 395 QIGAMYKGDRNRKWTLAEYGFRLPSALDNRPLKFEEWDAMRPQSVHVSATPANWEMERAG 454

Query: 542 GIIVEQIIRPTGLVDPPVEIRSAR----TQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           G+  EQ+IRPTGL+DPPVE+R       +QV+DV DEI    Q+G R L+TVLTK+MAED
Sbjct: 455 GVFAEQVIRPTGLIDPPVEVRPVSKDGASQVDDVVDEIRQTIQKGYRTLVTVLTKKMAED 514

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTEYL E+ IRVRYMHS+V TLERIEIIRDLRLG FDVLVGINLLREGLDIPECGLVAIL
Sbjct: 515 LTEYLNEQGIRVRYMHSDVDTLERIEIIRDLRLGHFDVLVGINLLREGLDIPECGLVAIL 574

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           DADKEGFLRS+TSLIQTIGRAARN++ KVILYAD IT S++ A+ ET RRREKQ  +N +
Sbjct: 575 DADKEGFLRSETSLIQTIGRAARNIDGKVILYADRITGSMERAMAETARRREKQHAYNLE 634

Query: 718 HNINPQSVKEKIMEVID-PILLEDAATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAA 775
           H I P+SVK  I ++++ P    D     + + +      S    KA LK L  +M  AA
Sbjct: 635 HGITPESVKRDIKDILNSPYERGDRVLVPMGMSETDDRPFSGDNFKAALKDLEAKMREAA 694

Query: 776 DNLNFEEAARIRDEIKRLK 794
            NL FE AAR+RDEIKR+K
Sbjct: 695 ANLEFETAARLRDEIKRMK 713


>gi|197284504|ref|YP_002150376.1| excinuclease ABC subunit B [Proteus mirabilis HI4320]
 gi|238693135|sp|B4ESU7|UVRB_PROMH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|194681991|emb|CAR41446.1| excinuclease ABC subunit B [Proteus mirabilis HI4320]
          Length = 669

 Score =  863 bits (2229), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/664 (55%), Positives = 470/664 (70%), Gaps = 4/664 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +++ P GDQP AIA L +G+      Q LLGVTGSGKTFT+A VI  + RP +V
Sbjct: 3   KVFKLHSEFKPGGDQPTAIASLCEGLEDGLAHQTLLGVTGSGKTFTIANVIANLNRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYSEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D IVVSSVS IYG+G  +SY +M++ L  G  ++Q+ +L  L   QY 
Sbjct: 123 RLSATKALLERKDVIVVSSVSAIYGLGDPDSYLKMMLHLSNGMIIDQRAILRRLADLQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D A RV +F  ++E +S F PLTGQ   NV    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSLFDPLTGQIHYNVPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  AM+ IK+EL  R   L    +L+E QR+ QR  +DLEM+   G 
Sbjct: 243 VYPKTHYVTPRERILDAMEKIKQELAERRKVLLANDKLVEEQRVTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMY+GD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    IVEQ++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYELEKSGNDIVEQVVRPTGLLDPV 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 VEVRPVATQVDDLLSEIRIRAAKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN+  K ILY D IT S+  AI ET RRREKQ + N +H I P+ + +KI +++     
Sbjct: 543 ARNLEGKAILYGDKITDSMAKAIGETERRREKQQQFNLEHGIVPKGLNKKIGDILKIGQP 602

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      +        LS  + +  ++ L  +M+  A +L FE+AA+ RD+++ L+
Sbjct: 603 TQGRNKKGHKAVDTHEDYPLLSTAELEKEIQRLETEMYQHAKDLEFEKAAQTRDKLQTLR 662

Query: 795 SSPY 798
           +   
Sbjct: 663 AQFI 666


>gi|146278911|ref|YP_001169070.1| excinuclease ABC subunit B [Rhodobacter sphaeroides ATCC 17025]
 gi|145557152|gb|ABP71765.1| Excinuclease ABC subunit B [Rhodobacter sphaeroides ATCC 17025]
          Length = 726

 Score =  863 bits (2229), Expect = 0.0,   Method: Composition-based stats.
 Identities = 431/662 (65%), Positives = 530/662 (80%), Gaps = 1/662 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +    F+M+T + P+GDQP AIA+L  G+ + E+ Q+LLG TG+GKTFTMAK+IE  Q
Sbjct: 20  KLEGGRRFEMKTPFKPAGDQPTAIAELASGVRAGEQNQVLLGATGTGKTFTMAKIIEETQ 79

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEKES INE
Sbjct: 80  RPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESQINE 139

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           QIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+YS M   L +G S +Q+++++ LV
Sbjct: 140 QIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDLVVGQSYDQRQVIAELV 199

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
            QQY+R D G  RG+FRV GDS+E++P+HLED AWR S FG ++E + EF PLTG K  +
Sbjct: 200 AQQYRRNDQGFQRGSFRVRGDSLEVWPAHLEDRAWRFSFFGEELESVVEFDPLTGAKTDS 259

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            + I+IYANSHYVTPRPT+  A++ IK+EL+ RL +L  EG+LLEAQRLEQR  +D+EML
Sbjct: 260 FKQIRIYANSHYVTPRPTMQQAVQGIKKELRQRLDQLVAEGKLLEAQRLEQRTNFDIEML 319

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           E TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHVT+PQI GMYRGD+ R
Sbjct: 320 EATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVTVPQIGGMYRGDYRR 379

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ  G+  EQ+IRPTG
Sbjct: 380 KFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPSAWELEQAGGVFAEQVIRPTG 439

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VEIR    QV+D+ DEI   A  GLR L+TVLTKRMAEDLTEYL+E+ IRVRYMH
Sbjct: 440 LLDPMVEIRPVEMQVDDLLDEIRKVAAAGLRTLVTVLTKRMAEDLTEYLHEQGIRVRYMH 499

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ T+ERIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQ
Sbjct: 500 SDIDTIERIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQ 559

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAARN   +VI+YAD IT S++ A+ ET RRREKQ+ +N+ H I PQ+VK+ + +V+
Sbjct: 560 TIGRAARNAEGRVIMYADRITGSMERALRETERRREKQIAYNEAHGITPQTVKKNVEDVL 619

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             +   D     ++   ++  +      AHL  LR  M  AA+NL FEEAAR+RDEIKRL
Sbjct: 620 AGLWQGDTDMNRVTAKVEK-PMVGSNLAAHLDGLRTAMRKAAENLEFEEAARLRDEIKRL 678

Query: 794 KS 795
           ++
Sbjct: 679 EA 680


>gi|227356683|ref|ZP_03841069.1| excinuclease ABC subunit B [Proteus mirabilis ATCC 29906]
 gi|227163191|gb|EEI48122.1| excinuclease ABC subunit B [Proteus mirabilis ATCC 29906]
          Length = 669

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/664 (56%), Positives = 470/664 (70%), Gaps = 4/664 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +++ P GDQP AIA L +G+      Q LLGVTGSGKTFT+A VI  + RP +V
Sbjct: 3   KVFKLHSEFKPGGDQPTAIASLCEGLEDGLAHQTLLGVTGSGKTFTIANVIANLNRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYSEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D IVVSSVS IYG+G  +SY +M++ L  G  ++Q+ +L  L   QY 
Sbjct: 123 RLSATKALLERKDVIVVSSVSAIYGLGDPDSYLKMMLHLSNGMIIDQRAILRRLADLQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D A RV +F  ++E +S F PLTGQ   NV    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSLFDPLTGQIHYNVPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK+EL  R   L    +L+E QR+ QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILDAMEKIKQELAERRKVLLANDKLVEEQRVTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMY+GD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    IVEQ++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYELEKSGNDIVEQVVRPTGLLDPV 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 VEVRPVATQVDDLLSEIRIRAAKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN+  K ILY D IT S+  AI ET RRREKQ + N +H I P+ + +KI +++     
Sbjct: 543 ARNLEGKAILYGDKITDSMAKAIGETERRREKQQQFNLEHGIVPKGLNKKIGDILKIGQP 602

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      +        LS  + +  ++ L  +M+  A +L FE+AA+ RD+++ L+
Sbjct: 603 TQGRNKKGHKAVDTHEDYPLLSTAELEKEIQRLETEMYQHAKDLEFEKAAQTRDKLQTLR 662

Query: 795 SSPY 798
           +   
Sbjct: 663 AQFI 666


>gi|307261128|ref|ZP_07542805.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306869158|gb|EFN00958.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 673

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/667 (56%), Positives = 489/667 (73%), Gaps = 6/667 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           SK    F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + R
Sbjct: 2   SKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNR 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PA+++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQ
Sbjct: 62  PAMLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQ 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  ++Q+E+L+ L +
Sbjct: 122 IEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAE 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    R TFRV G+ I+IFP+  +++A RV +F ++IE +S F PLTG  +  V
Sbjct: 182 LQYTRNDQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKV 241

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+ 
Sbjct: 242 PRYTIYPKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMN 301

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK
Sbjct: 302 ELGYCSGIENYSRYLSGRKEGEPPPTLFDYMPVDGLLIIDESHVTVPQIGGMYRGDRARK 361

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS +DNRPLRFEE+  L P TI VSATPGS+ELE+  G +V+Q++RPTGL
Sbjct: 362 ETLVQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGSYELEKSNGDVVDQVVRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+R   TQV+DV  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS
Sbjct: 422 LDPIIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHS 481

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 482 DIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 541

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D
Sbjct: 542 IGRAARNLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGITPQALNKKVGELLD 601

Query: 735 ------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                 P   + A              S+K+ +  LK L +QM   A +L FE+AA +RD
Sbjct: 602 IGQTDKPKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAAVRD 661

Query: 789 EIKRLKS 795
           +I +LK+
Sbjct: 662 KIGQLKA 668


>gi|237807887|ref|YP_002892327.1| excinuclease ABC subunit B [Tolumonas auensis DSM 9187]
 gi|237500148|gb|ACQ92741.1| excinuclease ABC, B subunit [Tolumonas auensis DSM 9187]
          Length = 669

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/664 (54%), Positives = 471/664 (70%), Gaps = 5/664 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ + P+GDQP AIA+LL GI +    Q LLGVTGSGKTFTMA VI  + RP +++A
Sbjct: 5   FKLESQFQPAGDQPEAIARLLDGIDAGLAHQTLLGVTGSGKTFTMANVIAKLNRPTMILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E + FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK+++INE I++MR 
Sbjct: 65  PNKTLAAQLYGEMREFFPENAVEYFVSYYDYYQPEAYVPTTDTFIEKDAAINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  ++Y  M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERRDVVIVASVSAIYGLGDPQAYLSMMLHLRQGDIINQRDILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+  + +A RV +F  +IE +S F PLTG   + +    ++
Sbjct: 185 DAVFQRATFRVRGEVIDIFPAESDKLALRVELFDEEIERLSLFDPLTGAVEKVIPRFTVF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR T+  A+  IK EL  R  +L    +LLE QRL QR  +D+EM++  G C 
Sbjct: 245 PKSHYVTPRDTILQAIDTIKVELAERREQLLSANKLLEEQRLTQRTLFDIEMMQELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRATGEPPPTLFDYLPADGLLIIDESHVTVPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+  L P TI VSATP ++ELE+  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFDEFEALMPQTIFVSATPAAYELEKSGGDVVQQVVRPTGLLDPEIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI L  +   R+L+T LTKRM+EDLTEYL+E  +RVRY+HS++ T+E
Sbjct: 425 VRPVTTQVDDLLSEIRLRVKLNERVLVTTLTKRMSEDLTEYLHEHGVRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-----P 735
           N+N K ILY D IT S++ AIDET RRR  Q   N +H I P+ + +K+++V+       
Sbjct: 545 NLNGKAILYGDRITNSMKTAIDETHRRRAVQQAFNLEHGITPKGLNKKVVDVMQLGGVSS 604

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                 A       A    L  K+    +K L  QM   A NL FE+AA +RD+I  L+ 
Sbjct: 605 KTQGKNAKKVAEPGAHYQWLHPKELAKEIKRLENQMFEHARNLEFEQAATLRDQIHELQQ 664

Query: 796 SPYF 799
               
Sbjct: 665 QLTM 668


>gi|34498607|ref|NP_902822.1| excinuclease ABC subunit B [Chromobacterium violaceum ATCC 12472]
 gi|81834593|sp|Q7NTA7|UVRB_CHRVO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|34104461|gb|AAQ60819.1| excinuclease ABC subunit B [Chromobacterium violaceum ATCC 12472]
          Length = 670

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/664 (56%), Positives = 485/664 (73%), Gaps = 1/664 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+   + P+GDQPAAI QL++G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 8   SPFQLNQPFPPAGDQPAAIEQLVEGLSDGLSYQTLLGVTGSGKTYTMANVIARTGRPAII 67

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLYSE + FFPHNAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++M
Sbjct: 68  MAHNKTLAAQLYSEMREFFPHNAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQM 127

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+S+LER DCI+V++VS IYGIG    Y QMI+ LK G++  Q++++S L   QY 
Sbjct: 128 RLSATKSILERPDCIIVATVSAIYGIGDPSDYHQMILHLKEGETTPQRDIISRLTTMQYS 187

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RGTFRV GD I+I+P+   D A RVS+F +++E ++ F PLTG   + V    
Sbjct: 188 RNDLDFGRGTFRVRGDVIDIYPAESSDTALRVSLFDDEVETLTLFDPLTGTTKQRVGRYT 247

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IK+EL+ R+   +KEG+L+EAQR+EQR  +DLEML   G 
Sbjct: 248 VFPSSHYVTPRDTVLRACEQIKDELRHRIEWYQKEGKLVEAQRIEQRTRFDLEMLYEMGF 307

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +GR PG+PPPTL +Y+P+++L+F+DESHVT+PQ+  MY+GD  RKA L 
Sbjct: 308 CKGIENYSRHFSGRGPGDPPPTLIDYLPKNALMFIDESHVTVPQVGAMYKGDAARKANLV 367

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS  DNRPL+F E+  L P TI VSATP  +E +   G +VEQ++RPTGLVDP 
Sbjct: 368 EYGFRLPSAADNRPLKFHEFEQLMPQTIFVSATPAVYEKDHA-GQVVEQVVRPTGLVDPE 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR   TQV+D+  EI     +G R+L+T LTKRMAE L +Y  E  ++VRY+HS++ T
Sbjct: 427 IEIRPVATQVDDLLSEIRERMARGERVLVTTLTKRMAEQLADYYTEHGVKVRYLHSDIDT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 487 VERVEIIRDLRLGMFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  K +LYAD IT S++ A+DET RRR KQ+  N +H I P+ V++KI ++ID +  
Sbjct: 547 ARNLRGKALLYADRITDSMRKAMDETERRRAKQMAFNAEHGIVPKGVEKKIKDIIDGVYS 606

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
            +A    +  +A    + +K     +K L K+M  AA NL FE AARIRDE+K+LK   +
Sbjct: 607 VEAERKKLVDEAAVAMMDEKTLSKEIKRLEKEMMEAARNLEFERAARIRDELKQLKEKAW 666

Query: 799 FQGL 802
              L
Sbjct: 667 LSDL 670


>gi|148557570|ref|YP_001265152.1| excinuclease ABC subunit B [Sphingomonas wittichii RW1]
 gi|148502760|gb|ABQ71014.1| Excinuclease ABC subunit B [Sphingomonas wittichii RW1]
          Length = 815

 Score =  862 bits (2227), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/771 (56%), Positives = 562/771 (72%), Gaps = 15/771 (1%)

Query: 37  VDKTMVADAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQS--------QSSISMSE 88
             +    +  R    +AG   K        H R  + S+    +         +  +   
Sbjct: 17  AGQQQEGEDGRCPADDAGAPAKPID-----HLRHFSLSRAILNAWRPGFKRQPAGRARFR 71

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
            + +     +++   +A+   I++    +  G+ + PHR             F++ +DY 
Sbjct: 72  SKIKGEHPPSLSYIGRAMTIQIRTSLDDVDLGQSFVPHRPERPEKTEGG-KPFKLVSDYE 130

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           PSGDQP AIA+L     + E+ Q+LLGVTGSGKTFTMAKV+E +QRPA+V+APNKILAAQ
Sbjct: 131 PSGDQPTAIAELAAQAAAGERDQVLLGVTGSGKTFTMAKVVEQLQRPALVLAPNKILAAQ 190

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           LY EFK FFP NAVE+FVSYYDYYQPEAYVPR+DTYIEKESS+NE IDRMRHSATRSLLE
Sbjct: 191 LYGEFKQFFPENAVEFFVSYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRSLLE 250

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           R+D ++V+SVSC+YGIGSVE+YS MI  LK G +V+Q+E++  LV  QYKR D    RG 
Sbjct: 251 RDDVLIVASVSCLYGIGSVETYSAMIFDLKKGQTVDQREIIRKLVALQYKRNDAAFSRGN 310

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           FRV GD++EIFPSH ED AWR++ FG++IEEI EF PLTG+K  +++ ++++ANSHYVTP
Sbjct: 311 FRVRGDNLEIFPSHYEDSAWRIAFFGDEIEEIVEFDPLTGKKAASLDHVRVFANSHYVTP 370

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
            PT+  AM+ I+ EL  RL EL  EGRLLEAQRLEQR  +DLEM+  TGSC  IENYSR+
Sbjct: 371 GPTMKQAMEAIRFELTERLKELHAEGRLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRF 430

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
           LTGR PGEPPPTLFEY+PE++LLFVDESH TI QI+GM RGD  RK TLAEYGFRLPSC+
Sbjct: 431 LTGRLPGEPPPTLFEYLPENALLFVDESHQTIGQINGMSRGDHRRKITLAEYGFRLPSCI 490

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           DNRPLRF EW  +RP T+ VSATPG WE+EQ  G+  EQ+IRPTGL+DPPV+IR   +QV
Sbjct: 491 DNRPLRFSEWEVMRPQTVYVSATPGGWEMEQTGGVFTEQVIRPTGLIDPPVDIRPIESQV 550

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +D+  E    A+QG R L+T LTKRMAEDLTEYL+E  ++VRYMHS+V+TLERIE+IRDL
Sbjct: 551 DDLVHEARETAKQGYRTLVTTLTKRMAEDLTEYLHEAGLKVRYMHSDVETLERIELIRDL 610

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           RLG +DVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARNV+ +VIL
Sbjct: 611 RLGVYDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVIL 670

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           YAD+IT S++ A+ ET+RRREKQ  +N++H I P++++  I +++  +  +D  T +  I
Sbjct: 671 YADSITGSMERAMAETSRRREKQQAYNEEHGITPETIRRSITDIVGHLASKDQVTVDTGI 730

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
           +  +  +     +A+++ L  +M  AA +L FEEA R+RDEI++L+     
Sbjct: 731 E-DRPHMVGHNLRAYIEELEGKMRAAAADLEFEEAGRLRDEIRKLEQEELG 780


>gi|260431431|ref|ZP_05785402.1| excinuclease ABC, B subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415259|gb|EEX08518.1| excinuclease ABC, B subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 726

 Score =  862 bits (2227), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/681 (62%), Positives = 535/681 (78%), Gaps = 1/681 (0%)

Query: 115 PLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLL 174
           P   + K              +    F M T++ P+GDQP AIA+L +GI   E+ Q+LL
Sbjct: 2   PYAHSDKTQLTVDDVRARLKLEGGKRFVMHTEFSPAGDQPTAIAELTQGILEGERNQVLL 61

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G TG+GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQP
Sbjct: 62  GATGTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQP 121

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           EAYVPR+DTYIEKES INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y  M 
Sbjct: 122 EAYVPRSDTYIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYGAMT 181

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             LK+G+  +Q+++++ LV QQY+R D    RG+FRV GDS+EI+P+HLED AW++S FG
Sbjct: 182 QDLKVGNEYDQRQVMADLVAQQYRRNDQAFQRGSFRVRGDSLEIWPAHLEDRAWKLSFFG 241

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
            ++E I+EF PLTG++   +E I++YANSHYVTP+PT+  A+  IK+EL+ RL +L  EG
Sbjct: 242 EELEAITEFDPLTGERTDTMEQIRVYANSHYVTPKPTMQQAILGIKKELRQRLDQLVGEG 301

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           +LLEAQRLEQR  +DLEMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F D
Sbjct: 302 KLLEAQRLEQRTNFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFAD 361

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           ESHV++PQI GMYRGD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP +I VSATP +
Sbjct: 362 ESHVSVPQIGGMYRGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSIFVSATPSA 421

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           WELEQ  G+  EQ+IRPTGL+DP VEIR    QV+D+ DE+   + +G R L+T LTKRM
Sbjct: 422 WELEQTGGVFTEQVIRPTGLLDPEVEIRPVEMQVDDLLDEVRKVSAKGFRTLVTTLTKRM 481

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AEDLTEY++E+ I+VRYMHS++ T+ERIEI+RDLRLG FDVLVGINLLREGLDIPECGLV
Sbjct: 482 AEDLTEYMHEQGIKVRYMHSDIDTIERIEILRDLRLGAFDVLVGINLLREGLDIPECGLV 541

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
           AILDADKEGFLRS+TSLIQTIGRAARN   +VI+YAD IT S++ A++ET RRR KQ+ +
Sbjct: 542 AILDADKEGFLRSETSLIQTIGRAARNAEGRVIMYADRITGSMERALEETNRRRAKQIAY 601

Query: 715 NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLA 774
           N++H I P++VK+ + +V+  +   D     ++    +  +     +AHL  LR+QM  A
Sbjct: 602 NEEHGITPETVKKNVDDVLAGLYAGDVDMNRVTATIDK-PMHGANLEAHLDGLREQMRKA 660

Query: 775 ADNLNFEEAARIRDEIKRLKS 795
           A+NL FEEAARIRDEIKRL++
Sbjct: 661 AENLEFEEAARIRDEIKRLEA 681


>gi|307256686|ref|ZP_07538465.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306864734|gb|EFM96638.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
          Length = 673

 Score =  862 bits (2227), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/667 (56%), Positives = 489/667 (73%), Gaps = 6/667 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           SK    F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + R
Sbjct: 2   SKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNR 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PA+++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQ
Sbjct: 62  PAMLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQ 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  ++Q+E+L+ L +
Sbjct: 122 IEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGALIDQREILARLAE 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    R TFRV G+ I+IFP+  +++A RV +F ++IE +S F PLTG  +  V
Sbjct: 182 LQYTRNDQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKV 241

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+ 
Sbjct: 242 PRYTIYPKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMN 301

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK
Sbjct: 302 ELGYCSGIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARK 361

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL
Sbjct: 362 ETLVQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+R   TQV+DV  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS
Sbjct: 422 LDPIIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHS 481

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 482 DIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 541

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D
Sbjct: 542 IGRAARNLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGITPQALNKKVGELLD 601

Query: 735 ------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                 P   + A              S+K+ +  LK L +QM   A +L FE+AA +RD
Sbjct: 602 IGQTDKPKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAAVRD 661

Query: 789 EIKRLKS 795
           +I +LK+
Sbjct: 662 KIGQLKT 668


>gi|148262374|ref|YP_001229080.1| excinuclease ABC subunit B [Geobacter uraniireducens Rf4]
 gi|146395874|gb|ABQ24507.1| excinuclease ABC, B subunit [Geobacter uraniireducens Rf4]
          Length = 664

 Score =  862 bits (2226), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/659 (55%), Positives = 489/659 (74%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +DY P GDQP AI +L +G+   ++ Q+LLGVTGSGKTFTMA VI  + RPA+
Sbjct: 1   MDKFKLNSDYQPRGDQPQAIGELSEGVERGDRDQVLLGVTGSGKTFTMANVIARVNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++APNK LAAQLY EFK  FP NAVE+FVSYYDYYQPEAY+P TDT+IEK+SSIN++ID+
Sbjct: 61  ILAPNKTLAAQLYGEFKELFPQNAVEFFVSYYDYYQPEAYLPTTDTFIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSATRSLL R+D I+V+SVSCIYGIGS  +Y +M +    GD+V + ELL  LV+ QY
Sbjct: 121 MRHSATRSLLTRSDVIIVASVSCIYGIGSPAAYQEMHIFFHQGDNVGRDELLKRLVETQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD +EIFP+H ++ A R+  FG+ ++ ISE  PL GQ I+ +   
Sbjct: 181 ERNDIDFHRGTFRVRGDIVEIFPAHDDERALRIEFFGDTVDAISEIDPLRGQVIQKLSKC 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SHYV  + TL  A++ I+ EL+ R+    +   L+EAQR+EQR  +D+EM+E  G
Sbjct: 241 AIYPASHYVANKETLERAIEQIRLELEERIRWFRERNMLIEAQRIEQRTFFDIEMMEEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+  GR+ GEPP TL +Y P+D LLFVDESH+T+ Q+ GMYRGD  RK TL
Sbjct: 301 FCQGIENYSRHFDGRSAGEPPYTLLDYFPKDYLLFVDESHITVSQVGGMYRGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL F+E+       + VSATP  +EL    G++VEQ+IRPTGL+DP
Sbjct: 361 VNYGFRLPSALDNRPLNFQEFTEKLNQVVYVSATPAEYELNIAGGVVVEQVIRPTGLIDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R A  QV+D+  E+ L   +G R+L+T LTKRMAEDLT+Y  E  +RV+Y+HS++ 
Sbjct: 421 EIEVRPASGQVDDLLHEVRLTVTKGERVLVTTLTKRMAEDLTDYYRELGVRVKYLHSDID 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T++R++IIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT GR
Sbjct: 481 TIQRMQIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTCGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+  +VI+YAD++T+S+Q  +DET+RRR+ Q E+N+KH+I PQS+K+++  +++ + 
Sbjct: 541 AARNLAGRVIMYADSVTRSMQACMDETSRRRKIQSEYNRKHHITPQSIKKEVRTILESVE 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             D  T  ++ ++ +   + K     +K LRK+M  AA  L+FE+AA +RD IK+L+  
Sbjct: 601 EHDYYTVPLAAESMEEYAAVKDIPKLVKKLRKEMLAAAKQLDFEKAAGLRDRIKKLEEQ 659


>gi|307249872|ref|ZP_07531846.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858061|gb|EFM90143.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 673

 Score =  862 bits (2226), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/667 (56%), Positives = 489/667 (73%), Gaps = 6/667 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           SK    F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + R
Sbjct: 2   SKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNR 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PA+++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQ
Sbjct: 62  PAMLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQ 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  ++Q+E+L+ L +
Sbjct: 122 IEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAE 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    R TFRV G+ I+IFP+  +++A RV +F ++IE +S F PLTG  +  V
Sbjct: 182 LQYTRNDQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKV 241

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+ 
Sbjct: 242 PRYTIYPKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMN 301

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK
Sbjct: 302 ELGYCSGIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARK 361

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL
Sbjct: 362 ETLVQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+R   TQV+DV  EI+       R+L+T LTK+MAEDLT+YL E  + VRY+HS
Sbjct: 422 LDPIIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVCVRYLHS 481

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 482 DIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 541

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN+N K ILY D IT S+Q AI ET RRREKQ ++N++H+I PQ++ +K+ E++D
Sbjct: 542 IGRAARNLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHSITPQALNKKVGELLD 601

Query: 735 ------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                 P   + A              S+K+ +  LK L +QM   A +L FE+AA +RD
Sbjct: 602 IGQTDKPKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAAVRD 661

Query: 789 EIKRLKS 795
           +I +LK+
Sbjct: 662 KIGQLKA 668


>gi|330829445|ref|YP_004392397.1| excinuclease ABC subunit B [Aeromonas veronii B565]
 gi|328804581|gb|AEB49780.1| excinuclease ABC subunit B [Aeromonas veronii B565]
          Length = 670

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/666 (55%), Positives = 481/666 (72%), Gaps = 6/666 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + P+GDQP AIAQLL GI S    Q LLGVTGSGKTFTMA VI  + RP ++
Sbjct: 3   KLFKLASQFQPAGDQPTAIAQLLDGIESGLAHQTLLGVTGSGKTFTMANVIATLNRPTMI 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASINDHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++V+SVS IYG+G  ++Y  M++ LK+GD + Q+++L  L + QY 
Sbjct: 123 RLSATKALLERRDVVIVASVSAIYGLGDPQAYLSMMLHLKVGDVINQRDILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RGTFRV G+ I+I+P+  + +A RV +F  ++E +S+F PLTG   + V    
Sbjct: 183 RNDMAFQRGTFRVRGEVIDIYPAESDKLALRVELFDEEVERLSQFDPLTGAIEQTVVRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HY TPR T+  A+++IKEEL+ R  +L    +L+E QR+ QR  +D+EM++  G 
Sbjct: 243 IYPKTHYATPRETILGAIEHIKEELRSRREQLLSLNKLVEEQRISQRTQFDMEMMQELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRAPGEPPPTLFDYLPGDGLLIIDESHVTVPQIGAMFKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+F+E+  L P T+ VSATPG +ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFDEFEALMPQTVFVSATPGPYELEKSGGDVVQQVVRPTGLLDPE 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI        R+L+T LTKRMAEDLTEYL E +++VRY+HS++ T
Sbjct: 423 IEVRPVTTQVDDLLSEIRKRVAVEERVLVTTLTKRMAEDLTEYLAEHDVKVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N KVILY DTIT S+++AI+ET RRR  Q  HN KH I P+ + + I +V+D    
Sbjct: 543 ARNLNGKVILYGDTITNSMKVAIEETERRRALQHAHNLKHGITPKGLNKSIGDVMDMGGS 602

Query: 739 EDAAT------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             A               +    S  +    +K + +QM   A +L FE+AA +RD+I++
Sbjct: 603 RTAGKPGKGMRKAAEPQGEYHVRSASEIAKEIKRMEEQMFQHARDLEFEQAAALRDQIQQ 662

Query: 793 LKSSPY 798
           L+S   
Sbjct: 663 LRSELI 668


>gi|296282346|ref|ZP_06860344.1| excinuclease ABC subunit B [Citromicrobium bathyomarinum JL354]
          Length = 727

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/696 (61%), Positives = 529/696 (76%), Gaps = 6/696 (0%)

Query: 105 ALARLI-QSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKG 163
           A+A LI +           + PH+             F++ ++Y P+GDQP AI +L++ 
Sbjct: 3   AMAELIIRRGLDEPDTTGEFVPHKPARPEKSMPG-KRFELVSEYEPAGDQPTAIEELVRE 61

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
               EK Q+LLGVTGSGKTFTMAKVIE +QRPA+++APNKILAAQLY EFK+FFP+NAVE
Sbjct: 62  AEGGEKTQVLLGVTGSGKTFTMAKVIEELQRPALILAPNKILAAQLYGEFKSFFPNNAVE 121

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
           YFVSYYDYYQPEAYVPR+DTYIEKESS+NE IDRMRHSATR+LLER+D I+V+SVSC+YG
Sbjct: 122 YFVSYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVIIVASVSCLYG 181

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           IGSVE+YS MI  +K G+SV+Q+EL+  LV  QYKR D+   RG FRV GD++E+FPSHL
Sbjct: 182 IGSVETYSAMIFDIKQGESVDQRELIRKLVALQYKRNDVAFARGNFRVRGDNLELFPSHL 241

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           ED AWR+S FG+DIEEI EF PLTG+    ++ +++YANSHYVTP PT+  A + IK EL
Sbjct: 242 EDTAWRISFFGDDIEEIVEFDPLTGKPGTKLDKVRVYANSHYVTPGPTMKQAAEAIKFEL 301

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
             RL ELE EG+LLE QRLEQR  +DLEM+  TGSC  IENYSR+LTGR PGEPPPTLFE
Sbjct: 302 AERLKELEAEGKLLEHQRLEQRTNFDLEMIAATGSCNGIENYSRFLTGRLPGEPPPTLFE 361

Query: 464 YIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP 523
           Y+PE++LLFVDESH T+PQI  M RGD  RK TLAEYGFRLPSC+DNRPLRF EW+ +RP
Sbjct: 362 YLPENALLFVDESHQTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRP 421

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T  VSATPG WELEQ  G+  EQ+IRPTGL+DPPVEIR    QV+D  +E    A +G 
Sbjct: 422 QTFAVSATPGGWELEQTGGVFAEQVIRPTGLIDPPVEIRPVEDQVQDCIEECKATAAKGY 481

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+T LTKRMAEDLTE+++E  ++VRYMHS+V+TLERIE+IRDLRLG +DVLVGINLLR
Sbjct: 482 RTLVTTLTKRMAEDLTEFMHEAGVKVRYMHSDVETLERIELIRDLRLGVYDVLVGINLLR 541

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
           EGLDIPECGLV ILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD IT S++ A+ E
Sbjct: 542 EGLDIPECGLVCILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRITGSMERAMAE 601

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
           T RRREKQ  +N++H I P +++  I ++       +        + +   L     +A+
Sbjct: 602 TERRREKQRAYNEEHGITPTTIRRAIADITAHATKGEDGEP----EDEATPLVGHNLRAY 657

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
           ++ L K+M  AA NL FEEA R+RDEI+ L++    
Sbjct: 658 IEDLEKKMREAAANLEFEEAGRLRDEIRALEADELG 693


>gi|303252414|ref|ZP_07338580.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307247637|ref|ZP_07529679.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|302648873|gb|EFL79063.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|306855849|gb|EFM88010.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
          Length = 673

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/667 (56%), Positives = 489/667 (73%), Gaps = 6/667 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           SK    F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + R
Sbjct: 2   SKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNR 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PA+++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQ
Sbjct: 62  PAMLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQ 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  ++Q+E+L+ L +
Sbjct: 122 IEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAE 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    R TFRV G+ I+IFP+  +++A RV +F ++IE +S F PLTG  +  V
Sbjct: 182 LQYTRNDQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKV 241

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+ 
Sbjct: 242 PRYTIYPKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMN 301

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK
Sbjct: 302 ELGYCSGIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARK 361

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL
Sbjct: 362 ETLVQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+R   TQV+DV  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS
Sbjct: 422 LDPIIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHS 481

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 482 DIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 541

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D
Sbjct: 542 IGRAARNLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIIPQALNKKVGELLD 601

Query: 735 ------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                 P   + A              S+K+ +  LK L +QM   A +L FE+AA +RD
Sbjct: 602 IGQTDKPKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAEVRD 661

Query: 789 EIKRLKS 795
           +I +L++
Sbjct: 662 KIGQLRA 668


>gi|268590298|ref|ZP_06124519.1| excinuclease ABC subunit B [Providencia rettgeri DSM 1131]
 gi|291314207|gb|EFE54660.1| excinuclease ABC subunit B [Providencia rettgeri DSM 1131]
          Length = 672

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/665 (55%), Positives = 474/665 (71%), Gaps = 7/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI    RP ++MA
Sbjct: 5   FKLYSDFQPGGDQPEAIHKLREGLQDGLAHQTLLGVTGSGKTFTIANVIAQENRPTMLMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  HNKTLAAQLYSEMKAFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  +SY +M++ L  G  ++Q+ +L  L   QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDSYLKMMLHLTDGMIIDQRSILRRLADLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F +++E +S F PLTGQ    V    +Y
Sbjct: 185 DQAFTRGTFRVRGEVIDIFPAESDEYALRVELFDDEVERLSLFDPLTGQIQHRVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L +  +LLE QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILEAMEQIKVELADRRKVLLENNKLLEEQRITQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI  MY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRAPGEPPPTLFDYLPADGLLVVDESHVTIPQIGAMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L P TI VSATPG++EL++    ++EQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGNYELDKSGNEVIEQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI +  Q+  R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVSTQVDDLLSEIRIRVQKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S+Q AI ET RRR KQ+  N++H I PQ + +KI +++       
Sbjct: 545 NLNGKAILYGDRITNSMQKAIAETERRRAKQMAFNEEHGIVPQGLNKKIGDILQIGHKVG 604

Query: 741 AATTNISIDAQQ-------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
               + + D  +        S+S K+ +  +  L  QM+  A +L FE AAR+RDE++ +
Sbjct: 605 GKGKSRTKDNTKNNNSVDIQSMSTKELEQRISQLEAQMYKHAQDLEFEAAARVRDELQEI 664

Query: 794 KSSPY 798
           +S   
Sbjct: 665 RSQFI 669


>gi|295401557|ref|ZP_06811526.1| excinuclease ABC, B subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109521|ref|YP_003987837.1| excinuclease ABC subunit B [Geobacillus sp. Y4.1MC1]
 gi|294976469|gb|EFG52078.1| excinuclease ABC, B subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214622|gb|ADP73226.1| excinuclease ABC, B subunit [Geobacillus sp. Y4.1MC1]
          Length = 659

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/656 (55%), Positives = 475/656 (72%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AIA+L++GI    K Q LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 5   FELVSAYQPQGDQPQAIAKLVEGIRKGVKHQTLLGATGTGKTFTISNVIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY+R 
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ I   E + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEIIGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL ++G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRLAIENIEKELEERLRELREQGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D L+ VDESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       I VSATPG +ELE     +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPE-VVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R L+T LTK+MAEDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIQERVKRNERTLVTTLTKKMAEDLTDYLKEVGIKVAYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTITKS+++AI+ET RRR  Q  +N++H I PQ+VK++I +VI      +
Sbjct: 544 NANGHVIMYADTITKSMEIAINETKRRRAIQEAYNREHGIVPQTVKKEIRDVIRATYAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +       ++KK+ +  +  L K+M  AA  L+FE AA++RD I  LK+ 
Sbjct: 604 EKETYDA-KPSYSKMTKKEREQLIADLEKEMKEAAKALDFERAAQLRDIIFELKAE 658


>gi|85710443|ref|ZP_01041507.1| excinuclease ABC subunit B [Erythrobacter sp. NAP1]
 gi|85687621|gb|EAQ27626.1| excinuclease ABC subunit B [Erythrobacter sp. NAP1]
          Length = 731

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/691 (61%), Positives = 539/691 (78%), Gaps = 2/691 (0%)

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           +I+      + G+ +TPHR             F++ +DY P+GDQP AI +L++G  + +
Sbjct: 5   IIRRGLEEPETGEEFTPHRPNRPEKSMPG-KKFKLVSDYEPAGDQPTAIKELVEGALAGD 63

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q LLGVTGSGKTFTMAKVIE +QRPA+++APNKILAAQLY E K+FFP NAVEYFVSY
Sbjct: 64  QTQTLLGVTGSGKTFTMAKVIETLQRPALILAPNKILAAQLYGEMKSFFPENAVEYFVSY 123

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPR+DTYIEKESS+NE IDRMRHSATR+LLER+D I+V+SVSC+YGIGSVE
Sbjct: 124 YDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVIIVASVSCLYGIGSVE 183

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +YS M+  +K  ++V+Q+EL+  LV  QYKR D    RG FRV GD++E+FPSH ED+AW
Sbjct: 184 TYSAMVFDIKKDETVDQRELIRKLVALQYKRNDAAFTRGCFRVRGDNLELFPSHYEDMAW 243

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+S FG++IEEI+EF PLTG+K  +++ +++YANSHYVTP PT+  A + IK EL+ RL 
Sbjct: 244 RISFFGDEIEEIAEFDPLTGKKGASLDKVRVYANSHYVTPGPTMKQATEAIKFELEHRLK 303

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           ELE+EG+LLE QRLEQR  +DLEM+  TGSC  IENYSR+LTGR PGEPPPTLFEY+PE+
Sbjct: 304 ELEEEGKLLEHQRLEQRTHFDLEMIAATGSCNGIENYSRFLTGRLPGEPPPTLFEYLPEN 363

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +LLFVDESH T+PQI  M RGD  RK TLAEYGFRLPSC+DNRPLRF EW+ +RP T  V
Sbjct: 364 ALLFVDESHQTVPQIGAMARGDHRRKLTLAEYGFRLPSCIDNRPLRFNEWDAMRPQTFAV 423

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG WE+EQ  G+  EQ+IRPTGL+DPPVEIR    QV+D   E    A++G R L+T
Sbjct: 424 SATPGPWEMEQTGGVFAEQVIRPTGLIDPPVEIRPVEDQVQDCIQECLATAKKGYRTLVT 483

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
            LTKRMAEDLTE+++E  ++VRYMHS+V+TLERIE+IRDLR+G +DVL+GINLLREGLDI
Sbjct: 484 TLTKRMAEDLTEFMHEAGVKVRYMHSDVETLERIELIRDLRMGVYDVLIGINLLREGLDI 543

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECGLV ILDADKEGFLRS+TSL+QTIGRAARNV+ +VILYAD IT S++ A+ ET RRR
Sbjct: 544 PECGLVCILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADRITGSMERAMAETDRRR 603

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
           EKQ   N++H I P+++K  I +++     +D  T + + D +  +L     +++++ L 
Sbjct: 604 EKQKAFNEEHGITPKTIKRDIADIVAHTASQDGVTVD-TGDDEVNNLVGHNLRSYIEDLE 662

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
           K+M  AA NL FEEA R+RDEI+RL++    
Sbjct: 663 KRMRDAAANLEFEEAGRLRDEIRRLENDELG 693


>gi|163744636|ref|ZP_02151996.1| excinuclease ABC subunit B [Oceanibulbus indolifex HEL-45]
 gi|161381454|gb|EDQ05863.1| excinuclease ABC subunit B [Oceanibulbus indolifex HEL-45]
          Length = 734

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/685 (61%), Positives = 532/685 (77%), Gaps = 6/685 (0%)

Query: 111 QSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKV 170
               PLL N       R        +    F++ T++ P+GDQP AI +L +G++S E+ 
Sbjct: 9   SEGMPLLANPAPDVRTRP-----KLEGGHSFKLVTEFAPAGDQPTAIKELTEGVNSGERD 63

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           Q+LLG TG+GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP NAVEYFVSYYD
Sbjct: 64  QVLLGATGTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSYYD 123

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
           YYQPEAYV R+DT+IEKES INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y
Sbjct: 124 YYQPEAYVARSDTFIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETY 183

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
             M   LK G+S +Q+++++ LV QQYKR D    RG+FRV GDS+EIFP+HL+D AWR+
Sbjct: 184 GAMTQDLKAGESYDQRKVIADLVAQQYKRNDAAFQRGSFRVRGDSLEIFPAHLDDRAWRL 243

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
           S FG ++E I+EF PLTG+K    + I++YANSHYVTP+PT++ A+  IK+EL+ RL +L
Sbjct: 244 SFFGEELESITEFDPLTGEKTDTFDQIRVYANSHYVTPKPTMSQAIIGIKKELRTRLDQL 303

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
             +G+LLEAQRLEQR  +D+EMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP++++
Sbjct: 304 VADGKLLEAQRLEQRTNFDIEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAI 363

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
           +F DESHV++PQI GMY+GD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSA
Sbjct: 364 VFADESHVSVPQIGGMYKGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSA 423

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
           TP +WE+EQ  G+  EQIIRPTGL+DP +EIR    QV+D+ DE+   A  G R L TVL
Sbjct: 424 TPAAWEIEQTGGVFTEQIIRPTGLIDPYIEIRPVEMQVDDLLDEVRKVAADGYRTLCTVL 483

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKRMAEDLTEY++E+ IRVRYMHS++ T+ERIEI+RDLRLG FDVL+GINLLREGLDIPE
Sbjct: 484 TKRMAEDLTEYMHEQGIRVRYMHSDIDTIERIEILRDLRLGAFDVLIGINLLREGLDIPE 543

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
           CGLVAILDADKEGFLRS+TSLIQTIGRAARN + +VI+YAD IT S++ A+ ET RRR K
Sbjct: 544 CGLVAILDADKEGFLRSETSLIQTIGRAARNADGRVIMYADRITGSMERAMGETDRRRAK 603

Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQ 770
           Q+ +N++H I P +VK+ + +++  +   D     ++       L+    +  L  LR  
Sbjct: 604 QMAYNEEHGITPATVKKNVDDILAGLYKGDVDMNRVTAKVD-NPLAGGNLQTVLDGLRTD 662

Query: 771 MHLAADNLNFEEAARIRDEIKRLKS 795
           M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 663 MRKAAENLEFEEAARLRDEVKRLEA 687


>gi|254475981|ref|ZP_05089367.1| excinuclease ABC, B subunit [Ruegeria sp. R11]
 gi|214030224|gb|EEB71059.1| excinuclease ABC, B subunit [Ruegeria sp. R11]
          Length = 732

 Score =  860 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/678 (62%), Positives = 531/678 (78%), Gaps = 2/678 (0%)

Query: 118 KNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVT 177
           K+                     F M T++ P+GDQPAAI +L  GI   E+ Q+LLG T
Sbjct: 8   KSTPTMAERAPQQRPKLEGG-KKFVMHTEFAPAGDQPAAIKELAGGIQDGERDQVLLGAT 66

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G+GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP N+VEYFVS+YDYYQPEAY
Sbjct: 67  GTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPENSVEYFVSFYDYYQPEAY 126

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
           VPR+DTYIEKES INEQIDRMRHSATR+LLER+D I+++SVSCIYGIGSVE+YS M   L
Sbjct: 127 VPRSDTYIEKESQINEQIDRMRHSATRALLERDDVIIIASVSCIYGIGSVETYSAMTQDL 186

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           K+G+  +Q+++++ LV QQYKR D    RG+FRV GDS+EIFP+HLED AWR+S FG ++
Sbjct: 187 KVGEEYDQRQVMADLVAQQYKRNDQAFQRGSFRVRGDSLEIFPAHLEDRAWRLSFFGEEL 246

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           E I+EF PLTG++    + I++YANSHYVTP+PTL  A+  IKEEL+MRL  L  EG+LL
Sbjct: 247 EGITEFDPLTGERTGTFDQIRVYANSHYVTPKPTLKQAVISIKEELRMRLDHLVGEGKLL 306

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESH 477
           EAQRLEQR  +D+EMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESH
Sbjct: 307 EAQRLEQRTNFDIEMLEATGHCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESH 366

Query: 478 VTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537
           V++PQI GMYRGD  RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+
Sbjct: 367 VSVPQIGGMYRGDHRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEM 426

Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           EQ  G+  EQ+IRPTGL+DP VEIR    QV+D+ DE+    + G R L+T LTKRMAED
Sbjct: 427 EQSGGVFAEQVIRPTGLLDPEVEIRPVDMQVDDLLDEVRKVTENGFRTLVTTLTKRMAED 486

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTEY++E+ I+VRYMHS++ TLERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAIL
Sbjct: 487 LTEYMHEQGIKVRYMHSDIDTLERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAIL 546

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           DADKEGFLRS+TSLIQTIGRAARN + +VI+YAD IT S++ A++ET RRREKQ+ +N++
Sbjct: 547 DADKEGFLRSETSLIQTIGRAARNADGRVIMYADRITGSMERALNETNRRREKQIAYNEE 606

Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
           H I P +VK+ + +V+  +   D     ++    +  +     +AHL  LR+QM  AA+N
Sbjct: 607 HGITPATVKKNVEDVLAGLYEGDVDMNRVTATIDK-PMHGANLEAHLAGLREQMRKAAEN 665

Query: 778 LNFEEAARIRDEIKRLKS 795
           L FEEAAR+RDE+KRL++
Sbjct: 666 LEFEEAARLRDEVKRLEA 683


>gi|299066976|emb|CBJ38171.1| ATP-dependent DNA excision repair enzyme, DNA damage recognition
           component [Ralstonia solanacearum CMR15]
          Length = 696

 Score =  860 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/671 (54%), Positives = 485/671 (72%), Gaps = 3/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D + FQ+   Y P+GDQP AI QL++GI      Q LLGVTGSGKT+TMA VI    RPA
Sbjct: 20  DGSPFQLYQPYLPAGDQPEAIRQLVEGIGDGLSYQTLLGVTGSGKTYTMANVIAQSGRPA 79

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 80  IVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 139

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 140 QMRLSATKSLMERRDVVIVATVSAIYGIGNPTEYHQMILTLRTGDKISQRDVIARLIAMQ 199

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+++IFP+   ++A R+ +F ++++ +  F PLTG+  + +  
Sbjct: 200 YTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDEVDSLQLFDPLTGRVRQKIPR 259

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A+  IK EL+ RL    +E +L+EAQRLEQR  +DLEML+  
Sbjct: 260 FTVYPSSHYVTPRETVLRAIGTIKAELRERLDFFYQENKLVEAQRLEQRTRFDLEMLQEL 319

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHV I Q++GMY GD  RK T
Sbjct: 320 GFCKGIENYSRHLSGAQPGEPPPTLVDYLPSDALMFLDESHVLIGQLNGMYNGDRARKET 379

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L+ YGFRLPS +DNRPL+F E+       + VSATP  +E ++    +VEQ++RPTGLVD
Sbjct: 380 LSAYGFRLPSALDNRPLKFAEFEGKMRQVVFVSATPADYEKQRAGDEVVEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P + +R A TQV+D+  EI+   + G R+L+T LTKRMAE LTE+L E  ++VRY+HS++
Sbjct: 440 PIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQLTEFLSENGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN   ILY D IT+S++ AI ET RRR KQ+ HN+ H I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGTAILYGDRITESMKKAIGETERRRAKQMAHNEAHGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA +RD++ +L
Sbjct: 620 YNVDDARAELKAAQDAAKYEDMSEKQVGKEIKRLEKQMLDHAKNLEFEKAASVRDQLAKL 679

Query: 794 KSSPYFQGLDD 804
           KS  +    +D
Sbjct: 680 KSQVFGASGED 690


>gi|190149976|ref|YP_001968501.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263304|ref|ZP_07544922.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|189915107|gb|ACE61359.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871366|gb|EFN03092.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 673

 Score =  860 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/667 (56%), Positives = 490/667 (73%), Gaps = 6/667 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           SK    F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + R
Sbjct: 2   SKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNR 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PA+++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQ
Sbjct: 62  PAMLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQ 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  ++Q+E+L+ L +
Sbjct: 122 IEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAIIDQREILARLAE 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    R TFRV G+ I+IFP+  +++A RV +F ++IE +S F PLTG  +  V
Sbjct: 182 LQYTRNDQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKV 241

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+ 
Sbjct: 242 PRYTIYPKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMN 301

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK
Sbjct: 302 ELGYCSGIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARK 361

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL
Sbjct: 362 ETLVQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+R   TQV+DV  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS
Sbjct: 422 LDPIIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHS 481

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 482 DIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 541

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN+N K ILY D IT S+Q AI ET RRREKQ ++N++H+I PQ++ +K+ E++D
Sbjct: 542 IGRAARNLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHSITPQALNKKVGELLD 601

Query: 735 ------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                 P   + A              S+K+ +  LK L +QM   A +L FE+AA +RD
Sbjct: 602 IGQTDKPKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAAVRD 661

Query: 789 EIKRLKS 795
           +I +LK+
Sbjct: 662 KIGQLKA 668


>gi|303250430|ref|ZP_07336628.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307252217|ref|ZP_07534114.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302650756|gb|EFL80914.1| excinuclease ABC subunit B [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306860139|gb|EFM92155.1| UvrABC system protein B [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 673

 Score =  860 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/667 (56%), Positives = 489/667 (73%), Gaps = 6/667 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           SK    F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + R
Sbjct: 2   SKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNR 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PA+++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQ
Sbjct: 62  PAMLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQ 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  ++Q+E+L+ L +
Sbjct: 122 IEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQLGAIIDQREILARLAE 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    R TFRV G+ I+IFP+  +++A RV +F ++IE +S F PLTG  +  V
Sbjct: 182 LQYTRNDQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGKV 241

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+ 
Sbjct: 242 PRYTIYPKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMN 301

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK
Sbjct: 302 ELGYCSGIENYSRYLSGRKEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARK 361

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL
Sbjct: 362 ETLVQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSNGDVVDQVVRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+R   TQV+DV  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS
Sbjct: 422 LDPIIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHS 481

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 482 DIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 541

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D
Sbjct: 542 IGRAARNLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIIPQALNKKVGELLD 601

Query: 735 ------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                 P   + A              S+K+ +  LK L +QM   A +L FE+AA +RD
Sbjct: 602 IGQTDKPKRGKQAVKIEEKSANTYKPKSRKELEKELKQLEQQMRDFAKDLEFEKAAEVRD 661

Query: 789 EIKRLKS 795
           +I +L++
Sbjct: 662 KIGQLRA 668


>gi|295696763|ref|YP_003590001.1| excinuclease ABC, B subunit [Bacillus tusciae DSM 2912]
 gi|295412365|gb|ADG06857.1| excinuclease ABC, B subunit [Bacillus tusciae DSM 2912]
          Length = 659

 Score =  860 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/656 (55%), Positives = 473/656 (72%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P GDQP AIA+L +GI    + Q LLGVTGSGKT+TMA VI  + +P +V+A
Sbjct: 6   FQLVSDYEPRGDQPEAIARLTEGIRRGYRHQTLLGVTGSGKTYTMANVIAQVNKPTLVIA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK++ IN++ID++RH
Sbjct: 66  HNKTLAAQLAAEFKAFFPNNAVEYFVSYYDYYQPEAYIPHTDTYIEKDAKINDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+G+ + Y   ++ L++G    ++E+L  LV  QY+R 
Sbjct: 126 SATSALFERSDVIIVASVSCIYGLGNPDEYRTHVLSLRVGMEKSRREILHRLVDMQYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +RGTFRV GD IEIFP+   + A RV +FG++I+ I+E   LTG+ I   E + ++
Sbjct: 186 DINFVRGTFRVRGDVIEIFPASRSEQAVRVELFGDEIDRITEVDVLTGEVIGQREHVAVF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT R  L  A++ I+ EL  RL  L  +G+LLEAQRLEQR  YDLEM++  G C 
Sbjct: 246 PASHFVTSRERLERAIRDIRVELAERLEVLRGQGKLLEAQRLEQRTNYDLEMMQELGFCP 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  G PP TLF+Y P+D LL +DESHVT+PQI GMY GD  RK TL E+
Sbjct: 306 GIENYSRHLEGRPAGSPPNTLFDYFPDDFLLLIDESHVTLPQIHGMYGGDKTRKDTLIEH 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL FEE+       I VSATPG +ELE  +  +VEQIIRPTGL+DP VE
Sbjct: 366 GFRLPSAADNRPLTFEEFEKKVHQVIYVSATPGPYELEHSEQ-VVEQIIRPTGLLDPKVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI     +  R+L+T LTKRMAEDLT+YL E   +VRY+HS++KT+E
Sbjct: 425 VRPIQGQIDDLVGEIRKRVNRDERVLVTTLTKRMAEDLTDYLKELGFKVRYLHSDIKTIE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ ++RDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 485 RMALLRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YADTIT S+  AI ET RRR KQ+ +N++H I PQ+V++ + ++I+     +
Sbjct: 545 NADGHVIMYADTITDSMAAAIRETERRRAKQMWYNQEHGITPQTVRKAVRDIIEATKAAE 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                  +  +   LSK++    ++ L K+M  AA  L FE AA +RD I  L +S
Sbjct: 605 EPAVY-EVVPKAQKLSKRERADLIRRLEKEMKEAAKALEFERAAELRDLIVELSAS 659


>gi|300692026|ref|YP_003753021.1| ATP-dependent DNA excision repair enzyme, DNA damage recognition
           component [Ralstonia solanacearum PSI07]
 gi|299079086|emb|CBJ51748.1| ATP-dependent DNA excision repair enzyme, DNA damage recognition
           component [Ralstonia solanacearum PSI07]
          Length = 696

 Score =  860 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/671 (54%), Positives = 485/671 (72%), Gaps = 3/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D + FQ+   Y P+GDQP AI QL +GI      Q LLGVTGSGKT+TMA VI    RPA
Sbjct: 20  DGSPFQLYQPYPPAGDQPEAIRQLFEGIGDGLSYQTLLGVTGSGKTYTMANVIAQAGRPA 79

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SS+NE I+
Sbjct: 80  IVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSVNEHIE 139

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SLLER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 140 QMRLSATKSLLERRDVVIVATVSAIYGIGNPTEYHQMILTLRTGDKISQRDVIARLIAMQ 199

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+++IFP+   ++A R+ +F ++++ +  F PLTG+  + +  
Sbjct: 200 YTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDEVDSLQLFDPLTGRVRQKIPR 259

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK EL+ RL    KE +L+EAQRLEQR  +DLEML+  
Sbjct: 260 FTVYPSSHYVTPRETVLRAIETIKAELRERLDFFYKENKLVEAQRLEQRTRFDLEMLQEL 319

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHV I Q++GMY GD  RK T
Sbjct: 320 GFCKGIENYSRHLSGAQPGEPPPTLVDYLPPDALMFLDESHVLIGQLNGMYNGDRARKET 379

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L+EYGFRLPS +DNRPL+F E+       + VSATP  +E ++    +VEQ++RPTGLVD
Sbjct: 380 LSEYGFRLPSALDNRPLKFAEFEGKMRQVVFVSATPADYEKQRAGDEVVEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P + +R A TQV+D+  EI+   + G R+L+T LTKRMAE LTE+L E  ++VRY+HS++
Sbjct: 440 PIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQLTEFLSEHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN   ILYAD IT S++ AI ET RRR KQ+ HN+ H I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGTAILYADRITDSMRRAIGETERRRAKQIAHNEAHGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA +RD + +L
Sbjct: 620 YNVDDARAELKAAQEAAKYEDMSEKQVGKEIKRLEKQMLDHARNLEFEKAAAVRDRLAKL 679

Query: 794 KSSPYFQGLDD 804
           KS  +    +D
Sbjct: 680 KSQVFGASGED 690


>gi|207743642|ref|YP_002260034.1| uvrabc system protein b (uvrb protein) (excinuclease abc subunit b)
           [Ralstonia solanacearum IPO1609]
 gi|206595041|emb|CAQ61968.1| uvrabc system protein b (uvrb protein) (excinuclease abc subunit b)
           [Ralstonia solanacearum IPO1609]
          Length = 696

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/671 (55%), Positives = 484/671 (72%), Gaps = 3/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI QLL+GI      Q LLGVTGSGKT+TMA VI    RPA
Sbjct: 20  EGSPFQLYQPYPPAGDQPGAIRQLLEGIGDGLSYQTLLGVTGSGKTYTMANVIAQAGRPA 79

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SS+NE I+
Sbjct: 80  IVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSVNEHIE 139

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SLLER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 140 QMRLSATKSLLERRDVVIVATVSAIYGIGNPTEYHQMILTLRTGDRISQRDVIARLIAMQ 199

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A R+ +F ++I+ +  F PLTG+  + +  
Sbjct: 200 YTRNETDFQRGTFRVRGDTIDIFPAEHAEMAVRLELFDDEIDSLQLFDPLTGRVRQKIPR 259

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A+  IK EL+ RL    KE +L+EAQRLEQR  +DLEML+  
Sbjct: 260 FTVYPSSHYVTPRETVLRAIGAIKAELRERLDFFYKENKLVEAQRLEQRTRFDLEMLQEL 319

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHV I Q +GMY GD  RK T
Sbjct: 320 GFCKGIENYSRHLSGAQPGEPPPTLVDYLPPDALMFLDESHVLIGQFNGMYNGDRARKET 379

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L+EYGFRLPS +DNRPL+F E+       + VSATP  +E ++    +VEQ++RPTGLVD
Sbjct: 380 LSEYGFRLPSALDNRPLKFAEFEGKMRQVVFVSATPADYEKQRAGDEVVEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P + +R A TQV+D+  EI+   + G R+L+T LTKRMAE LTE+L E  ++VRY+HS++
Sbjct: 440 PIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQLTEFLSEHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN   ILY D IT S++ AI ET RRR KQ+ HN+ H I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGTAILYGDRITDSMRRAIGETERRRAKQIAHNEAHGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA +RD++ +L
Sbjct: 620 YNVDDARAELKAAQEAAKYEDMSEKQVGKEIKRLEKQMLDHAKNLEFEKAAAVRDQLAKL 679

Query: 794 KSSPYFQGLDD 804
           KS  +    +D
Sbjct: 680 KSQVFGASGED 690


>gi|24374050|ref|NP_718093.1| excinuclease ABC subunit B [Shewanella oneidensis MR-1]
 gi|24348524|gb|AAN55537.1|AE015692_7 excinuclease ABC, B subunit [Shewanella oneidensis MR-1]
          Length = 673

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/665 (55%), Positives = 483/665 (72%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ + P+GDQP AIA+L+ G+ S    Q LLGVTGSGKTFT+A VI  + RP I+
Sbjct: 4   SVFQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAKLGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD++ Q+++L  L + QY 
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDTMGQRDILKRLSELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGTFRV G+ I+IFP+  +  A RV +F ++IE +SEF PLTGQ ++ +    
Sbjct: 184 RNDIELQRGTFRVRGEVIDIFPADSDRYAIRVELFDDEIERLSEFDPLTGQIVKRIARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A + IK+EL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKTHYVTPREKILEATELIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLVIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP S+ELE+  G IVEQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNSYELEKSGGEIVEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    QV+D+  E+        R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVGIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD IT S+  AI ET RRREKQ  +N +H I P+ V ++I +V+D    
Sbjct: 544 ARNVNGKVILYADRITNSMAKAIGETERRREKQRLYNLEHGIVPKGVVKRITDVMDVDDG 603

Query: 739 EDAATTN--------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            +A   +            A++      +    +  L KQMH  A NL FE+AA +RDE+
Sbjct: 604 REAEKGHGQASLGRVAEPKAKRYHADAAQLSHDIDKLEKQMHEHARNLEFEQAAALRDEV 663

Query: 791 KRLKS 795
           KRL+ 
Sbjct: 664 KRLRE 668


>gi|332089011|gb|EGI94123.1| excinuclease ABC, B subunit [Shigella boydii 5216-82]
          Length = 673

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/665 (56%), Positives = 477/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D IVV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHGLEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|125972830|ref|YP_001036740.1| excinuclease ABC subunit B [Clostridium thermocellum ATCC 27405]
 gi|256005843|ref|ZP_05430793.1| excinuclease ABC, B subunit [Clostridium thermocellum DSM 2360]
 gi|281417029|ref|ZP_06248049.1| excinuclease ABC, B subunit [Clostridium thermocellum JW20]
 gi|125713055|gb|ABN51547.1| Excinuclease ABC subunit B [Clostridium thermocellum ATCC 27405]
 gi|255990207|gb|EEU00339.1| excinuclease ABC, B subunit [Clostridium thermocellum DSM 2360]
 gi|281408431|gb|EFB38689.1| excinuclease ABC, B subunit [Clostridium thermocellum JW20]
 gi|316940935|gb|ADU74969.1| excinuclease ABC, B subunit [Clostridium thermocellum DSM 1313]
          Length = 660

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/660 (55%), Positives = 474/660 (71%), Gaps = 2/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +DY P GDQP AI +L++GI+   + Q LLGVTGSGKTFTMA VIE +Q+P +
Sbjct: 1   MHKFKLVSDYKPCGDQPEAIDKLVEGINRGYRGQTLLGVTGSGKTFTMANVIERVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEFK FFP+N VEYFVSYYDYYQPEAY+P TDTYIEK+SSIN++ID+
Sbjct: 61  VIAHNKTLAAQLCSEFKEFFPNNCVEYFVSYYDYYQPEAYIPATDTYIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G  E Y+ +++ L+ G   ++ E++  LV  QY
Sbjct: 121 LRHSATAALFERRDVIIVASVSCIYGLGDPEDYTDLMLSLRPGMIKDRDEIIRKLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R +I   RG FRV GD +EIFP+   D   RV  FG +I+ I+E   LTG+       +
Sbjct: 181 ERNEIDFKRGKFRVRGDILEIFPASSSDKVIRVEFFGEEIDRITEVDSLTGEITGVCSHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHY T +  +  A+  I++EL+ R+ EL+ +G+LLEAQRLEQR  YDLEM++  G
Sbjct: 241 AIFPASHYATTKAKMQRAIASIEQELEERVRELKSQGKLLEAQRLEQRTRYDLEMMQEIG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+++GR PG PP TL +Y P+D LL +DESHVTIPQI  MY GD  RK +L
Sbjct: 301 FCQGIENYSRHISGRAPGSPPFTLIDYFPKDFLLIIDESHVTIPQIGAMYNGDRSRKESL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL FEE+       I VSATP  +E E  Q  IVEQIIRPTGL+DP
Sbjct: 361 VEYGFRLPSAFDNRPLTFEEFEKKINQVIFVSATPAKYEREHSQQ-IVEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++  + Q++D+  EI+   Q+  R+++T LTK+MAEDLT+YL E + +V Y+HS++ 
Sbjct: 420 EIVVKPVKGQIDDLIGEISERVQKNQRVMITTLTKKMAEDLTDYLRELDFKVEYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIR+LRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMEIIRNLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  KVI+YADTIT S++ AIDET RRR+ Q E+N+KH I P+SV++ I +VI+   
Sbjct: 540 AARNVEGKVIMYADTITDSMRRAIDETNRRRKIQSEYNQKHGITPKSVQKGIRDVIEITK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + +       I   + S+ K +    ++ L  +M  AA  L FE AA +RD+I  LK   
Sbjct: 600 VAEEDAKYF-IRGDEDSMDKDEVLDLIEKLTNEMKAAAAELQFERAAELRDKIAELKKKI 658


>gi|302382065|ref|YP_003817888.1| excinuclease ABC subunit B [Brevundimonas subvibrioides ATCC 15264]
 gi|302192693|gb|ADL00265.1| excinuclease ABC, B subunit [Brevundimonas subvibrioides ATCC
           15264]
          Length = 791

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 449/741 (60%), Positives = 549/741 (74%), Gaps = 14/741 (1%)

Query: 61  AKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG 120
            K + I  +    +   F        S    + +S   M   V    RL   + P     
Sbjct: 15  QKPVHIPNKGLAEAPSAFI----RDGSAPLPKAMSNLPMFAPVTGP-RLTPEEAP--TAP 67

Query: 121 KIWTPHRSWSINNHS--KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTG 178
             WTPHR          +    F+++T Y P+GDQPAAIA+L+      ++ Q+LLGVTG
Sbjct: 68  GDWTPHRPDRPAKSLTGRQKHRFRLETSYTPAGDQPAAIAELVSQASQGDRDQVLLGVTG 127

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           SGKTFTMAKVIEA QRPA+++APNK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV
Sbjct: 128 SGKTFTMAKVIEATQRPALILAPNKTLAAQLYSEFKAFFPDNAVEYFVSYYDYYQPEAYV 187

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLK 298
           PRTDTYIEK+SSINEQIDRMRHSATRS+LER+D IVV+SVSCIYGIGSVE+Y+ M   LK
Sbjct: 188 PRTDTYIEKDSSINEQIDRMRHSATRSILERDDVIVVASVSCIYGIGSVETYTAMTFDLK 247

Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358
           +GD +++ +L + L+  QYKR D+   RG FR  GD++EIFP HL+D AWRVS+FG++IE
Sbjct: 248 VGDQIDESKLRADLIALQYKRNDVAFERGMFRKRGDTVEIFPVHLDDRAWRVSLFGDEIE 307

Query: 359 EISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE 418
            I+EF PLTG+K   ++ + +YA SHYVTPRPTLN A+  IK ELK  L  + + G+LLE
Sbjct: 308 SIAEFDPLTGKKTAELKEVTVYAASHYVTPRPTLNQALGGIKAELKETLDWMIENGKLLE 367

Query: 419 AQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHV 478
           AQRLEQR+ +DLEM+E TGSC  IENYSR+LTGR PGEPPPT FEYIP+++LLFVDESHV
Sbjct: 368 AQRLEQRVRFDLEMMEATGSCAGIENYSRWLTGRAPGEPPPTFFEYIPDNALLFVDESHV 427

Query: 479 TIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
           TI QI+GM+RGD+ RK+TLAEYGFRLPSC+DNRPL+F+EW  +RP T+ VSATPG WE+E
Sbjct: 428 TIGQINGMFRGDYRRKSTLAEYGFRLPSCIDNRPLKFDEWEAMRPQTVHVSATPGPWEME 487

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSA----RTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           Q  G+ VEQ+IRPTGL+DPPVEIR      R QV+DV DE+   A+ G R L+TVLTK+M
Sbjct: 488 QTGGVFVEQVIRPTGLIDPPVEIRPVSGTTRNQVDDVIDEVKAVARAGYRSLVTVLTKKM 547

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AEDLTEY++E+ +RVRYMHS+V T+ERIEIIRDLRLG FDVL+GINLLREGLDIPECGLV
Sbjct: 548 AEDLTEYMHEQGVRVRYMHSDVDTMERIEIIRDLRLGTFDVLIGINLLREGLDIPECGLV 607

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
           AILDADKEGFLRS+TSLIQTIGRAARNV+  VILYAD +T S++ A+ ET RRRE+Q  +
Sbjct: 608 AILDADKEGFLRSETSLIQTIGRAARNVDGHVILYADRVTGSMERAMAETNRRRERQEAY 667

Query: 715 NKKHNINPQSVKEKIMEVIDPILLEDAA-TTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
           N +H I P+SVK  I E+++    +D        +            +A LK L  +M  
Sbjct: 668 NAEHGITPESVKRDIKEILNSPYEKDRVLIPTTGVKEDARPFIGNNFQATLKDLEGKMRE 727

Query: 774 AADNLNFEEAARIRDEIKRLK 794
           AA NL FEEA R+RDEIK+LK
Sbjct: 728 AASNLEFEEAGRLRDEIKKLK 748


>gi|207725269|ref|YP_002255665.1| uvrABC system protein B [Ralstonia solanacearum MolK2]
 gi|300704659|ref|YP_003746262.1| ATP-dependent DNA excision repair enzyme, DNA damage recognition
           component [Ralstonia solanacearum CFBP2957]
 gi|206590503|emb|CAQ37465.1| uvrabc system protein b (uvrb protein) (excinuclease abc subunit b)
           [Ralstonia solanacearum MolK2]
 gi|299072323|emb|CBJ43657.1| ATP-dependent DNA excision repair enzyme, DNA damage recognition
           component [Ralstonia solanacearum CFBP2957]
          Length = 696

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/671 (55%), Positives = 485/671 (72%), Gaps = 3/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI QLL+GI      Q LLGVTGSGKT+TMA VI    RPA
Sbjct: 20  EGSPFQLYQPYPPAGDQPGAIRQLLEGIGDGLSYQTLLGVTGSGKTYTMANVIAQAGRPA 79

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SS+NE I+
Sbjct: 80  IVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSVNEHIE 139

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SLLER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 140 QMRLSATKSLLERRDVVIVATVSAIYGIGNPTEYHQMILTLRTGDRISQRDVIARLIAMQ 199

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A R+ +F ++++ +  F PLTG+  + +  
Sbjct: 200 YTRNETDFQRGTFRVRGDTIDIFPAEHAEMAVRLELFDDEVDSLQLFDPLTGRVRQKIPR 259

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A+  IK EL+ RL    KE +L+EAQRLEQR  +DLEML+  
Sbjct: 260 FTVYPSSHYVTPRETVLRAIGAIKAELRERLDFFYKENKLVEAQRLEQRTRFDLEMLQEL 319

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHV I Q +GMY GD  RK T
Sbjct: 320 GFCKGIENYSRHLSGAQPGEPPPTLVDYLPPDALMFLDESHVLIGQFNGMYNGDRARKET 379

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L+EYGFRLPS +DNRPL+F E+       + VSATP  +E ++    +VEQ++RPTGLVD
Sbjct: 380 LSEYGFRLPSALDNRPLKFAEFEGKMRQVVFVSATPADYEKQRAGDEVVEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P + +R A TQV+D+  EI+   + G R+L+T LTKRMAE LTE+L E  ++VRY+HS++
Sbjct: 440 PIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQLTEFLSEHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN   ILYAD IT S++ AI ET RRR KQ+ HN+ H I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGTAILYADRITDSMRRAIGETERRRAKQIAHNEAHGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA +RD++ +L
Sbjct: 620 YNVDDARAELKAAQEAARYEDMSEKQVGKEIKRLEKQMLDHAKNLEFEKAAAVRDQLAKL 679

Query: 794 KSSPYFQGLDD 804
           KS  +    +D
Sbjct: 680 KSQVFGASGED 690


>gi|320178489|gb|EFW53454.1| Excinuclease ABC subunit B [Shigella boydii ATCC 9905]
 gi|333006897|gb|EGK26393.1| excinuclease ABC, B subunit [Shigella flexneri VA-6]
          Length = 673

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/665 (56%), Positives = 477/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D IVV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|221638490|ref|YP_002524752.1| excinuclease ABC subunit B [Rhodobacter sphaeroides KD131]
 gi|221159271|gb|ACM00251.1| UvrABC system protein B [Rhodobacter sphaeroides KD131]
          Length = 727

 Score =  859 bits (2220), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/662 (64%), Positives = 528/662 (79%), Gaps = 1/662 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +    F+M+T + P+GDQP AIA+L  G+   E+ Q+LLG TG+GKTFTMAK+IE  Q
Sbjct: 20  KLEGGRRFEMKTPFQPAGDQPTAIAELAAGVQGGEQNQVLLGATGTGKTFTMAKIIEETQ 79

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INE
Sbjct: 80  RPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARSDTYIEKESQINE 139

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           QIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+YS M   L +G+S +Q+++++ LV
Sbjct: 140 QIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDLIVGESYDQRQVIAELV 199

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
            QQY+R D    RG+FRV GDS+E++P+HLED AWR S FG ++E I EF PLTG K  +
Sbjct: 200 AQQYRRNDQAFQRGSFRVRGDSLEVWPAHLEDRAWRFSFFGEELESIVEFDPLTGAKTDS 259

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            + I+IYANSHYVTPRPT+  A++ IK EL+ RL +L  EG+LLEAQRLEQR  +DLEML
Sbjct: 260 FKQIRIYANSHYVTPRPTMQQAIQGIKRELRQRLDQLVNEGKLLEAQRLEQRTNFDLEML 319

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           E TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHVT+PQI GMYRGD+ R
Sbjct: 320 EATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVTVPQIGGMYRGDYRR 379

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ  G+  EQ+IRPTG
Sbjct: 380 KFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFAEQVIRPTG 439

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VEIR    QV+D+ DEI   A  GLR+L+TVLTKRMAEDLTEY +E+ IR+RYMH
Sbjct: 440 LLDPVVEIRPVEMQVDDLLDEIRRVAAAGLRVLVTVLTKRMAEDLTEYFHEQGIRIRYMH 499

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ T+ERIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQ
Sbjct: 500 SDIDTIERIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQ 559

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAARN + +VI+YAD IT S++ A+ ET RRREKQ+ +N +H I PQ+V++ + +V+
Sbjct: 560 TIGRAARNADGRVIMYADRITGSMERALRETERRREKQIAYNIEHGITPQTVRKNVEDVL 619

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             +   D   + ++    +  +      AHL  LR  M  AA+NL FEEAAR+RDEIKRL
Sbjct: 620 SGLWQGDTDQSRVTAKVDK-PMVGANLAAHLDGLRVSMRKAAENLEFEEAARLRDEIKRL 678

Query: 794 KS 795
           ++
Sbjct: 679 EA 680


>gi|323701478|ref|ZP_08113151.1| excinuclease ABC, B subunit [Desulfotomaculum nigrificans DSM 574]
 gi|323533487|gb|EGB23353.1| excinuclease ABC, B subunit [Desulfotomaculum nigrificans DSM 574]
          Length = 672

 Score =  859 bits (2220), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/654 (54%), Positives = 475/654 (72%), Gaps = 2/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++++ P GDQP AI +L++G+H   K Q LLG TG+GKTFTMA +I+  QRP +++A
Sbjct: 3   FKLRSEFQPRGDQPRAIRELVQGLHQGYKHQTLLGATGTGKTFTMANIIQQTQRPTLILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL SEFK FFP N VEYFVSY+DYYQPEAY+P TDTYIEK+SSIN++ID++RH
Sbjct: 63  PNKTLAAQLCSEFKEFFPENCVEYFVSYFDYYQPEAYIPHTDTYIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LLER D I+V+SVSCIYG+G+ E+Y  +++ L++G   ++  +L  LV  QY+R 
Sbjct: 123 AATTALLERRDVIIVASVSCIYGLGNPETYRDLVLSLRVGGVYDRDAILRKLVDIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD IEIFP+   D A RV MFG+++E + E   LTG+ +   + I ++
Sbjct: 183 DLNFTRGKFRVRGDVIEIFPASATDRALRVEMFGDEVERLLEIDVLTGEILGQRQHIAVF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I+ EL+ RL EL + G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 243 PASHFVTEEENMKRAIANIELELEQRLQELRQNGKLLEAQRLEQRTRYDLEMMAEVGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGE P TL ++ PED LL +DESHV +PQI GMY GD  RK TL E+
Sbjct: 303 GIENYSRHLTGRAPGEAPYTLLDFFPEDWLLIIDESHVAVPQIGGMYEGDRSRKTTLVEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+       I VSATPG++ELE     +VEQIIRPTGLVDP + 
Sbjct: 363 GFRLPSALDNRPLKFAEFESKVNQVIYVSATPGNYELEHS-SQVVEQIIRPTGLVDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+  EI L  ++  RIL+T LTK+MAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 422 VRPTRGQIDDLLGEIRLRVERDERILVTTLTKKMAEDLTDYLKEHGIRVRYLHSDINTIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS+ SLIQTIGRAAR
Sbjct: 482 RMEILRDLRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD +T S++ AI ET RRR+ Q+ +N+KH I PQ+V++ + +VI+     +
Sbjct: 542 NAEGKVIMYADKMTDSMKKAIGETERRRQIQMAYNQKHGITPQTVRKAVRDVIEATRAAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                ++   +   ++K   K  +  L K+M  +A +L FE AA++RD I  L+
Sbjct: 602 EKAPYVA-KTKAGKMTKTDIKKMIAKLEKEMKESAKHLEFERAAQLRDAIIELR 654


>gi|333009765|gb|EGK29214.1| excinuclease ABC, B subunit [Shigella flexneri K-272]
 gi|333020430|gb|EGK39693.1| excinuclease ABC, B subunit [Shigella flexneri K-227]
          Length = 673

 Score =  859 bits (2219), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/665 (56%), Positives = 477/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSVFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D IVV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|7766819|pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
          Length = 658

 Score =  859 bits (2219), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/657 (56%), Positives = 474/657 (72%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y P GDQP AIA+L+ G+    K Q LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 5   FQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +++V L++G  +E+  LL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS-EFYPLTGQKIRNVETIKI 379
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I  E   LTG+ +   E + I
Sbjct: 185 DIDF-RGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIRAEVDALTGKVLGEREHVAI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    +  A++ I++EL+ RL EL  +G+LLEAQRLEQR  YDLEM+   G C
Sbjct: 244 FPASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L  R PG  P TL +Y P+D L+ VDESHVT+PQ+ GMY GD  RK  L +
Sbjct: 304 SGIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVD 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL FEE+       I VSATPG +ELE   G +VEQIIRPTGL+DP +
Sbjct: 364 HGFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPG-VVEQIIRPTGLLDPTI 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R  + Q++D+  EI    ++  R L+T LTK+MAEDLT+YL E  I+V Y+HSE+KTL
Sbjct: 423 DVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTL 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 483 ERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VI+YADTITKS+++AI ET RRR  Q E+N+KH I P++VK++I +VI      
Sbjct: 543 RNANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYAA 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +      +  A   +++K++ +  +++L  +M  AA  L+FE AA++RD I  LK+ 
Sbjct: 603 EETEMYEAKPA--AAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKAE 657


>gi|17545730|ref|NP_519132.1| excinuclease ABC subunit B [Ralstonia solanacearum GMI1000]
 gi|21542280|sp|Q8Y0N2|UVRB_RALSO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|17428024|emb|CAD14713.1| probable uvrabc system protein b (uvrb protein) (excinuclease abc
           subunit b) [Ralstonia solanacearum GMI1000]
          Length = 696

 Score =  859 bits (2219), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/671 (54%), Positives = 485/671 (72%), Gaps = 3/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D + FQ+   Y P+GDQP AI QL++GI      Q LLGVTGSGKT+TMA VI    RPA
Sbjct: 20  DGSPFQLYQPYPPAGDQPEAIRQLVEGIGDGLSYQTLLGVTGSGKTYTMANVIAQAGRPA 79

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SS+NE I+
Sbjct: 80  IVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSVNEHIE 139

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SLLER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 140 QMRLSATKSLLERRDVVIVATVSAIYGIGNPTEYHQMILTLRTGDKISQRDVIARLIAMQ 199

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+++IFP+   ++A R+ +F ++++ +  F PLTG+  + +  
Sbjct: 200 YTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDEVDSLQLFDPLTGRVRQKILR 259

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A+  IK EL+ RL    +E +L+EAQRLEQR  +DLEML+  
Sbjct: 260 FTVYPSSHYVTPRETVLRAIGTIKAELRERLDFFYQENKLVEAQRLEQRTRFDLEMLQEL 319

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHV I Q++GMY GD  RK T
Sbjct: 320 GFCKGIENYSRHLSGAQPGEPPPTLVDYLPSDALMFLDESHVLIGQLNGMYNGDRARKET 379

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L+ YGFRLPS +DNRPL+F E+       + VSATP  +E ++    +VEQ++RPTGLVD
Sbjct: 380 LSAYGFRLPSALDNRPLKFAEFEGKMRQVVFVSATPADYEKQRAGDEVVEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P + +R A TQV+D+  EI+   + G R+L+T LTKRMAE LTE+L E  ++VRY+HS++
Sbjct: 440 PIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQLTEFLSENGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN   ILY D IT+S++ AI ET RRR KQ+ HN+ H I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGTAILYGDRITESMKKAIGETERRRAKQIAHNEAHGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA +RD++ +L
Sbjct: 620 YNVDDARAELKAAQDAAKYEDMSEKQVGKEIKRLEKQMLDHAKNLEFEKAAAVRDQLAKL 679

Query: 794 KSSPYFQGLDD 804
           KS  +    +D
Sbjct: 680 KSQVFGASGED 690


>gi|209965175|ref|YP_002298090.1| excinuclease ABC, B subunit, putative [Rhodospirillum centenum SW]
 gi|209958641|gb|ACI99277.1| excinuclease ABC, B subunit, putative [Rhodospirillum centenum SW]
          Length = 778

 Score =  859 bits (2219), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/657 (63%), Positives = 525/657 (79%), Gaps = 1/657 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
               + +++ P+GDQP AIA+L +G+   E+ Q+LLGVTGSGKTFTMA VI+A+QRP ++
Sbjct: 45  APLTVVSEFAPAGDQPRAIAELTEGLRRGERDQVLLGVTGSGKTFTMAHVIQALQRPTLI 104

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K+FFP NAVEYFVSYYDYYQPEAYVPRTDTYIEKES+INEQIDRM
Sbjct: 105 LAPNKTLAAQLYGEMKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKESTINEQIDRM 164

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+ATR+LLER D ++V+SVSCIYGIGSVE+Y  M V + +G ++ +++ L  LV+ QY+
Sbjct: 165 RHAATRALLERRDAVIVASVSCIYGIGSVETYQAMTVDVVVGQALHRQKFLQQLVELQYR 224

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D G  RGTFRV GD++E+FP+H+ED AWR S+FG+++E I EF PLTG+K   ++ ++
Sbjct: 225 RNDAGFSRGTFRVRGDTVELFPAHMEDRAWRFSLFGDEVEAIHEFDPLTGEKQGALKEVR 284

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IYANSHYVTP+PTL  A++ IK +LK+RL E   EG+LLEAQRLEQR T+D+EM+  TGS
Sbjct: 285 IYANSHYVTPKPTLQQAVEQIKRDLKLRLEEFYAEGKLLEAQRLEQRTTFDIEMMAATGS 344

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GRNPGEPPPTLFEY+PED+LL VDESHV +PQI GM+RGDF RK+TLA
Sbjct: 345 CAGIENYSRYLSGRNPGEPPPTLFEYLPEDALLIVDESHVMVPQIGGMFRGDFMRKSTLA 404

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPSC DNRPL+FEEW+ +RP T+ VSATPG WELE+  G+ VEQ++RPTGLVDP 
Sbjct: 405 DFGFRLPSCKDNRPLKFEEWDTMRPPTVFVSATPGPWELERTGGVFVEQVVRPTGLVDPE 464

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V +R   TQV+DV  E+     +GLR+L+T LTK+MAE LTEY+ E  I+VRY+HS+V+T
Sbjct: 465 VIVRPTETQVDDVMAEVREVVAKGLRVLVTTLTKKMAEALTEYMMEAGIKVRYIHSDVET 524

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LERIEIIRDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEG+LRS+TSLIQTIGRA
Sbjct: 525 LERIEIIRDLRLGVFDVLIGINLLREGLDIPECGLVAILDADKEGYLRSRTSLIQTIGRA 584

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  + ILYAD  T S++ A++ET RRR +QL +N +H I P+SV++ I +V+  +  
Sbjct: 585 ARNLEGRAILYADKETASMKAALEETARRRARQLAYNAEHGITPESVRKNIADVLGSVY- 643

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           E      +   A    L+ K  KA +  L K+M  AA +L FE AA+IRDEI+RL++
Sbjct: 644 ERGDRVEVDTGAAGNLLAGKDIKAVIADLEKKMRTAAADLEFETAAKIRDEIRRLEA 700


>gi|126461527|ref|YP_001042641.1| excinuclease ABC subunit B [Rhodobacter sphaeroides ATCC 17029]
 gi|126103191|gb|ABN75869.1| Excinuclease ABC subunit B [Rhodobacter sphaeroides ATCC 17029]
          Length = 727

 Score =  859 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/662 (64%), Positives = 528/662 (79%), Gaps = 1/662 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +    F+M+T + P+GDQP AIA+L  G+   E+ Q+LLG TG+GKTFTMAK+IE  Q
Sbjct: 20  KLEGGRRFEMKTPFQPAGDQPTAIAELAAGVQGGEQNQVLLGATGTGKTFTMAKIIEETQ 79

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INE
Sbjct: 80  RPAIILAPNKTLAAQLYGEFKGFFPENAVEYFVSYYDYYQPEAYVARSDTYIEKESQINE 139

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           QIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+YS M   L +G+S +Q+++++ LV
Sbjct: 140 QIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDLIVGESYDQRQVIAELV 199

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
            QQY+R D    RG+FRV GDS+E++P+HLED AWR S FG ++E I EF PLTG K  +
Sbjct: 200 AQQYRRNDQAFQRGSFRVRGDSLEVWPAHLEDRAWRFSFFGEELESIVEFDPLTGAKTDS 259

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            + I+IYANSHYVTPRPT+  A++ IK EL+ RL +L  EG+LLEAQRLEQR  +DLEML
Sbjct: 260 FKQIRIYANSHYVTPRPTMQQAIQGIKRELRQRLDQLVNEGKLLEAQRLEQRTNFDLEML 319

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           E TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHVT+PQI GMYRGD+ R
Sbjct: 320 EATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVTVPQIGGMYRGDYRR 379

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ  G+  EQ+IRPTG
Sbjct: 380 KFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFAEQVIRPTG 439

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VEIR    QV+D+ DEI   A  GLR+L+TVLTKRMAEDLTEY +E+ IR+RYMH
Sbjct: 440 LLDPVVEIRPVEMQVDDLLDEIRRVAAAGLRVLVTVLTKRMAEDLTEYFHEQGIRIRYMH 499

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ T+ERIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQ
Sbjct: 500 SDIDTIERIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQ 559

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAARN + +VI+YAD IT S++ A+ ET RRREKQ+ +N +H I PQ+V++ + +V+
Sbjct: 560 TIGRAARNADGRVIMYADRITGSMERALRETERRREKQIAYNIEHGITPQTVRKNVEDVL 619

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             +   D   + ++    +  +      AHL  LR  M  AA+NL FEEAAR+RDEIKRL
Sbjct: 620 AGLWQGDTDQSRVTAKVDK-PMVGANLAAHLDGLRVSMRKAAENLEFEEAARLRDEIKRL 678

Query: 794 KS 795
           ++
Sbjct: 679 EA 680


>gi|226330883|ref|ZP_03806401.1| hypothetical protein PROPEN_04804 [Proteus penneri ATCC 35198]
 gi|225201678|gb|EEG84032.1| hypothetical protein PROPEN_04804 [Proteus penneri ATCC 35198]
          Length = 669

 Score =  859 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/662 (56%), Positives = 473/662 (71%), Gaps = 4/662 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P GDQPAAIA L +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHSEFKPGGDQPAAIASLCEGLDDGLAHQTLLGVTGSGKTFTIANVIANLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYSEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVVSSVS IYG+G  +SY +M++ L  G  ++Q+ +L  L   QY R 
Sbjct: 125 SATKALLERKDVIVVSSVSAIYGLGDPDSYLKMMLHLTNGMIIDQRAILRRLADLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A RV +F  ++E +S F PLTGQ   NV    +Y
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSLFDPLTGQIHYNVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK+EL  R   L    +L+E QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILEAMEEIKKELADRRKVLLANNKLVEEQRVTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I+EQ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYELEKSGNEIIEQVVRPTGLLDPIVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRIRAAKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N+  K ILY D IT S+  AI ET RRREKQ + N +H I P+ + +K+ +++    P  
Sbjct: 545 NLEGKAILYGDKITDSMAKAISETERRREKQQQFNLEHGIVPKGLNKKVGDILKIGQPTQ 604

Query: 738 LEDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +      +   +    LS  + +  ++ L  +M+  A +L FE+AA  RD+++ L++ 
Sbjct: 605 GRNKKGHKATDIHENYPLLSTAELEKEIQRLEAEMYQYAKDLEFEKAASTRDKLQALRAQ 664

Query: 797 PY 798
             
Sbjct: 665 FI 666


>gi|153814663|ref|ZP_01967331.1| hypothetical protein RUMTOR_00878 [Ruminococcus torques ATCC 27756]
 gi|317501127|ref|ZP_07959333.1| UvrABC system protein B [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331090128|ref|ZP_08339017.1| UvrABC system protein B [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145848157|gb|EDK25075.1| hypothetical protein RUMTOR_00878 [Ruminococcus torques ATCC 27756]
 gi|316897514|gb|EFV19579.1| UvrABC system protein B [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330402590|gb|EGG82159.1| UvrABC system protein B [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 662

 Score =  859 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/658 (53%), Positives = 474/658 (72%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI QL+KG     + Q LLGVTGSGKTFTMA VI+ + +P +
Sbjct: 1   MDHFELVSEYAPTGDQPQAIDQLVKGFQEGNQCQTLLGVTGSGKTFTMANVIQQLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID+
Sbjct: 61  IIAHNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT +L ER D I+V+SVSCIYG+GS   Y  M++ L+ G + ++ E+++ L++ QY
Sbjct: 121 LRLSATMALTERRDVIIVASVSCIYGLGSPVDYQNMVISLRPGMTKDRDEVMAKLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD +EI P++  DVA R+  FG+++E I+E   LTG+    +  +
Sbjct: 181 DRNDMDFHRGTFRVRGDVVEIIPAYESDVAIRIEFFGDEVERITEIDILTGEVKDELSHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV  +  +  A+  I++EL  R+ E +   +LLEAQR+ +R  +D+EML+ TG
Sbjct: 241 AIFPASHYVVDKENIKRAVNDIEKELDERVKEFKHADKLLEAQRIAERTNFDIEMLKETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L G +PG+ P TL +Y P+D ++ +DESH TIPQI GMY GD  RK+TL
Sbjct: 301 FCSGIENYSRHLAGLSPGQAPYTLIDYFPDDFIIMIDESHKTIPQIGGMYHGDQSRKSTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL FEE+       + VSATPG +E E  + + VEQ+IRPTGL+DP
Sbjct: 361 VDYGFRLPSAKDNRPLNFEEFESKINQALFVSATPGVYEEEH-ELLRVEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R    Q++D+  EIN    Q  ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS+V 
Sbjct: 420 EVVVRPVEGQIDDLIGEINKEISQKNKVLVTTLTKRMAEDLTDYMREVGIRVKYLHSDVD 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD IT+S+QLAIDET RRRE Q+++N++H I P+++++ + ++I   +
Sbjct: 540 AARNAQGHVIMYADKITESMQLAIDETKRRREIQMKYNEEHGITPKTIQKSVRDLI--SI 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +  A   + ++    S+S K+ K  +  L KQM  AA  LNFE AA +RD++  LK 
Sbjct: 598 SKKVAAEELKLEKDPESMSVKELKKLIADLTKQMKKAAAELNFESAAELRDKLTELKK 655


>gi|77462635|ref|YP_352139.1| excinuclease ABC subunit B [Rhodobacter sphaeroides 2.4.1]
 gi|332557517|ref|ZP_08411839.1| excinuclease ABC subunit B [Rhodobacter sphaeroides WS8N]
 gi|77387053|gb|ABA78238.1| Excinuclease ABC subunit B [Rhodobacter sphaeroides 2.4.1]
 gi|332275229|gb|EGJ20544.1| excinuclease ABC subunit B [Rhodobacter sphaeroides WS8N]
          Length = 727

 Score =  859 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/662 (64%), Positives = 528/662 (79%), Gaps = 1/662 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +    F+M+T + P+GDQP AIA+L  G+   E+ Q+LLG TG+GKTFTMAK+IE  Q
Sbjct: 20  KLEGGRRFEMKTPFQPAGDQPTAIAELAAGVQGGEQNQVLLGATGTGKTFTMAKIIEETQ 79

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INE
Sbjct: 80  RPAIILAPNKTLAAQLYGEFKGFFPENAVEYFVSYYDYYQPEAYVARSDTYIEKESQINE 139

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           QIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+YS M   L +G+S +Q+++++ LV
Sbjct: 140 QIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDLIVGESYDQRQVIAELV 199

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
            QQY+R D    RG+FRV GDS+E++P+HLED AWR S FG ++E I EF PLTG K  +
Sbjct: 200 AQQYRRNDQAFQRGSFRVRGDSLEVWPAHLEDRAWRFSFFGEELESIVEFDPLTGAKTDS 259

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            + I+IYANSHYVTPRPT+  A++ IK EL+ RL +L  EG+LLEAQRLEQR  +DLEML
Sbjct: 260 FKQIRIYANSHYVTPRPTMQQAIQGIKRELRQRLDQLVNEGKLLEAQRLEQRTNFDLEML 319

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           E TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHVT+PQI GMYRGD+ R
Sbjct: 320 EATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVTVPQIGGMYRGDYRR 379

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ  G+  EQ+IRPTG
Sbjct: 380 KFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFAEQVIRPTG 439

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VEIR    QV+D+ DEI   A  GLR+L+TVLTKRMAEDLTEY +E+ IR+RYMH
Sbjct: 440 LLDPVVEIRPVEMQVDDLLDEIRRVAAAGLRVLVTVLTKRMAEDLTEYFHEQGIRIRYMH 499

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ T+ERIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQ
Sbjct: 500 SDIDTIERIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQ 559

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAARN + +VI+YAD IT S++ A+ ET RRREKQ+ +N +H I PQ+V++ + +V+
Sbjct: 560 TIGRAARNADGRVIMYADRITGSMERALRETERRREKQIAYNIEHGITPQTVRKNVEDVL 619

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             +   D   + ++    +  +      AHL  LR  M  AA+NL FEEAAR+RDEIKRL
Sbjct: 620 AGLWQGDTDQSRVTAKVDK-PMVGANLAAHLDGLRVSMRKAAENLEFEEAARLRDEIKRL 678

Query: 794 KS 795
           ++
Sbjct: 679 EA 680


>gi|117621062|ref|YP_856963.1| excinuclease ABC subunit B [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117562469|gb|ABK39417.1| excinuclease ABC, B subunit [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 670

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/666 (55%), Positives = 481/666 (72%), Gaps = 6/666 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             FQ+ + + P+GDQP AIAQLL GI S    Q LLGVTGSGKTFTMA VI  + RP ++
Sbjct: 3   KLFQLASQFQPAGDQPRAIAQLLDGIESGLAHQTLLGVTGSGKTFTMANVIATLNRPTMI 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP N+VEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPDNSVEYFVSYYDYYQPEAYVPTTDTFIEKDASINDHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++V+SVS IYG+G  ++Y  M++ LK+GD + Q+++L  L + QY 
Sbjct: 123 RLSATKALLERRDVVIVASVSAIYGLGDPQAYLSMMLHLKVGDLINQRDILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RGTFRV G+ I+I+P+  + +A RV +F  ++E +S F PLTG   + V    
Sbjct: 183 RNDMAFQRGTFRVRGEVIDIYPAESDKLALRVELFDEEVERLSLFDPLTGAIEQTVVRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HY TPR T+  A+++IKEELK R  +L   G+L+E QR+ QR  +D+EM++  G 
Sbjct: 243 IYPKTHYATPRETILGAIEHIKEELKSRREQLLSLGKLVEEQRISQRTQFDIEMMQELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRAPGEPPPTLFDYLPGDGLLIIDESHVTVPQIGAMFKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+F+E+  L P T+ VSATPG +ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFDEFEALMPQTVFVSATPGPYELEKSGGDVVQQVVRPTGLLDPE 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI        R+L+T LTKRMAEDLTEYL +  +RVRY+HS++ T
Sbjct: 423 IEVRPVTTQVDDLLSEIRKRVAVEERVLVTTLTKRMAEDLTEYLADHEVRVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N KVILY DTIT S+Q+AI+ET RRR  Q  HN +H I P  + + + +V+D    
Sbjct: 543 ARNLNGKVILYGDTITNSMQVAIEETERRRALQHAHNLEHGITPTGLNKSVGDVMDMGGS 602

Query: 739 EDAATT------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             A  +            +  + S  +    +K + +QM   A +L FE+AA +RD+I+R
Sbjct: 603 RSAGKSGRGSRKAAEPQGEYHARSASEISKEIKRMEEQMFQHARDLEFEQAAALRDQIQR 662

Query: 793 LKSSPY 798
           L++   
Sbjct: 663 LRNELI 668


>gi|308049943|ref|YP_003913509.1| Excinuclease ABC subunit B [Ferrimonas balearica DSM 9799]
 gi|307632133|gb|ADN76435.1| Excinuclease ABC subunit B [Ferrimonas balearica DSM 9799]
          Length = 665

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/661 (54%), Positives = 474/661 (71%), Gaps = 1/661 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + P+GDQP AIA+LL G+ +    Q LLGVTGSGKTFTMA V+  + RP I+
Sbjct: 3   RPFKLHSQFQPAGDQPGAIAKLLDGLDAGLAHQTLLGVTGSGKTFTMANVVAELNRPTII 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQLY E K FFP N+VEYFVSYYDYYQPEAYVP TDT+IEK++SIN  I++M
Sbjct: 63  LAHNKTLAAQLYGEMKEFFPENSVEYFVSYYDYYQPEAYVPSTDTFIEKDASINAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ER D ++V+SVS IYG+G  ++Y  M++ L+ GD + Q+++L  L + QY 
Sbjct: 123 RLSATKALMERRDVVLVASVSAIYGLGDPKAYMAMLLHLRQGDIMNQRDILKRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RGTFRV G+ I+IFP+  E  A R+ +F  +IE I+ F PLTG + R V    
Sbjct: 183 RNDMAFERGTFRVRGEVIDIFPADSEKEAVRIELFDEEIERITLFDPLTGAQSREVARYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR T+  A+  IK ELK+R  +L    +L+EAQR+++R  +D+EM+   G 
Sbjct: 243 VYPKTHYVTPRETIIGAIDKIKAELKVRHQQLLDNNKLIEAQRIKERTQFDVEMMLELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGEPPPTL +Y+P+D LL +DESHVT+PQ+  MY+GD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRAPGEPPPTLLDYLPDDGLLIIDESHVTVPQLGAMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS MDNRPL+FEE+  + P T+ VSATP  +EL++  G +VEQ++RPTGL+DP 
Sbjct: 363 EYGFRLPSAMDNRPLKFEEFEAIAPQTVFVSATPAKYELDKSAGDVVEQVVRPTGLLDPE 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL + ++RVRY+HS+V T
Sbjct: 423 IEVRPVATQVDDLLSEIRIRADKNERVLVTTLTKRMAEDLTEYLEDHDVRVRYLHSDVDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQT+GRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTMGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN K ILYAD IT S++ AI ET RRR KQ  +N +H I P+ + +KI +V+D    
Sbjct: 543 ARNVNGKAILYADRITGSMERAIGETQRRRAKQEAYNAEHGIVPKGLVKKITDVMDVGGK 602

Query: 739 EDAATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                  ++        +   K    +  L K M+  A NL FE+AA +RDEI  L+   
Sbjct: 603 RRPGERKVAETKPTYQPVDPAKLAKSIAELEKTMYEHARNLEFEKAAALRDEITALREQL 662

Query: 798 Y 798
            
Sbjct: 663 V 663


>gi|149181818|ref|ZP_01860308.1| excinuclease ABC subunit B [Bacillus sp. SG-1]
 gi|148850457|gb|EDL64617.1| excinuclease ABC subunit B [Bacillus sp. SG-1]
          Length = 660

 Score =  858 bits (2216), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 471/656 (71%), Gaps = 1/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P GDQPAAI ++ +GI   ++ Q LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 5   FQLHSKYQPRGDQPAAIKEITQGIRDGKRHQTLLGATGTGKTFTVSNVIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y  ++V L++G  +E+ +LL  LV  QY R 
Sbjct: 125 SATSSLFERKDVIIIASVSCIYGLGSPEEYRDLVVSLRVGMEIERNQLLRKLVDVQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   R+  FG++I+ I E   LTG+ I   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASRDEHCMRIEFFGDEIDRIREVDSLTGEIIGERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I++EL+ +L  + +E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRVAIGNIEQELEEQLKVMREENKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPSGSTPYTLLDYFPEDFLIVIDESHVTLPQIRGMFNGDQARKKVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+FEE+       + VSATPG +E E    +I +QIIRPTGL+DP ++
Sbjct: 365 GFRLPSAMDNRPLKFEEFEQKANQLVYVSATPGPYEGEHSPEMI-QQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EIN   ++  R+L+T LTK+M+EDL+ YL E  I+V+Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLIGEINERVEKNERVLVTTLTKKMSEDLSAYLKEIGIKVQYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+GK+DVL+GINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRMGKYDVLIGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YAD +T S+Q A+DET+RRRE Q+E+N+KH I PQ++++ I  +I      +
Sbjct: 544 NANGHVIMYADKLTDSMQKALDETSRRREIQIEYNEKHGITPQTIQKNIPNLIRATHAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             T       +   L+K + +  + SL  +M  AA  L+FE AA++RD I  LK+ 
Sbjct: 604 DQTEYEGAQKKVTKLTKPEREKLIASLEGEMKEAARALDFERAAQLRDTILELKAE 659


>gi|152978761|ref|YP_001344390.1| excinuclease ABC subunit B [Actinobacillus succinogenes 130Z]
 gi|150840484|gb|ABR74455.1| excinuclease ABC, B subunit [Actinobacillus succinogenes 130Z]
          Length = 692

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/673 (55%), Positives = 488/673 (72%), Gaps = 6/673 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + +D+ PSGDQP+AIA+L++ ++     Q LLGVTGSGKTFT+A VI  + RPA
Sbjct: 20  NTKPFILHSDFKPSGDQPSAIAKLVENLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPA 79

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI+
Sbjct: 80  MLLAPNKTLAAQLYAEMKTFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIE 139

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+S LER D IVV+SVS IYG+G  +SY +M++ L+ G  ++Q+++L+ L + Q
Sbjct: 140 QMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQTGAIIDQRQILARLAELQ 199

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV G+ I+IFP+  +D A R+ +F N+IE +S F PLTG     +  
Sbjct: 200 YTRNDQAFQRGTFRVRGEIIDIFPAESDDQAVRIELFDNEIERLSLFDPLTGTGFGRIPR 259

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y  +HYVTPR  +  A++ IK EL  R     KE +LLE QR+ QR  +D+EM+   
Sbjct: 260 FTVYPKTHYVTPREQILDAIEKIKTELAKRREYFIKENKLLEEQRITQRTLFDIEMMNEL 319

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRYL+GRN GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK T
Sbjct: 320 GYCSGIENYSRYLSGRNEGEPPPTLFDYVPADGLLIIDESHVTVPQIGGMYRGDRSRKET 379

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+D
Sbjct: 380 LVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EIR    QV+D+  E    A++  RIL+T LTKRMAEDLT+YL E  +RVRY+HS++
Sbjct: 440 PEIEIRPVAIQVDDLLSESRQRAEKNERILVTTLTKRMAEDLTDYLEEHGVRVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN+  K ILYAD IT+S+  AI ET RRREKQ+++N++H I PQ + +K+ E++D  
Sbjct: 560 RAARNLKGKAILYADRITQSMDKAITETNRRREKQMKYNEEHGIIPQGLNKKVGELLDIG 619

Query: 737 LLEDAATTNISIDAQ------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
              +          +      +L  + K+ +  +K L +QM+  A +L FE+AA +RD++
Sbjct: 620 QNSNRNKGKSRNKIENSSAHYKLPKTPKELQKQIKKLEQQMYKFAQDLEFEKAAAMRDQL 679

Query: 791 KRLKSSPYFQGLD 803
            +L+       L+
Sbjct: 680 HQLRQEFMLDKLE 692


>gi|258541339|ref|YP_003186772.1| excinuclease ABC subunit B [Acetobacter pasteurianus IFO 3283-01]
 gi|256632417|dbj|BAH98392.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256635474|dbj|BAI01443.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256638529|dbj|BAI04491.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256641583|dbj|BAI07538.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256644638|dbj|BAI10586.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256647693|dbj|BAI13634.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256650746|dbj|BAI16680.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256653737|dbj|BAI19664.1| excinuclease UvrABC helicase subunit B UvrB [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 748

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/697 (59%), Positives = 528/697 (75%), Gaps = 2/697 (0%)

Query: 101 PSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKD--ITFFQMQTDYHPSGDQPAAIA 158
            S  + +       P L       P   +     +    +   ++ ++Y P+GDQP AI+
Sbjct: 2   ASKTSSSAARGKKRPSLSERAASLPPVLFEPEKQAPRPRLKRMEVVSEYEPAGDQPQAIS 61

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +L+ G+ + E+ Q+LLGVTGSGKTF+MAK+IEA Q+P +++APNK LAAQLY E K FFP
Sbjct: 62  ELVAGVEAGERDQVLLGVTGSGKTFSMAKIIEATQKPTLILAPNKTLAAQLYGEMKQFFP 121

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
           +NAVEYFVSYYDYYQPEAYVPR+DTYIEK+S INEQIDRMRH+AT++LLERND I+V+SV
Sbjct: 122 NNAVEYFVSYYDYYQPEAYVPRSDTYIEKDSQINEQIDRMRHAATQALLERNDVIIVASV 181

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           SCIYGIGSVE+YS+M+V+L++G  +++ +L+ SLV+ QY+R D    RGTFRV G++I+I
Sbjct: 182 SCIYGIGSVETYSRMVVKLELGGEIDRDKLIKSLVELQYRRNDAAFARGTFRVRGETIDI 241

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP   ED AWRVS+FG++++ + EF PLTG+K  +++ I +YANSHYVTPRPTLN A+K 
Sbjct: 242 FPVQNEDRAWRVSLFGDEVDGLIEFDPLTGEKTADLQEITVYANSHYVTPRPTLNQAIKG 301

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           IK+EL+ +L    K G+LLEA+RL+QR T+DLEMLETTG C+ IENYSRYL+GR PG+PP
Sbjct: 302 IKQELREQLDVFTKAGKLLEAERLDQRTTFDLEMLETTGVCKGIENYSRYLSGRKPGDPP 361

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           PTLFEY+PED+LL VDESHVT+PQI GM RGD  RK+ LAE+GFRLPSC+DNRPL F EW
Sbjct: 362 PTLFEYLPEDALLIVDESHVTVPQIGGMERGDHARKSVLAEFGFRLPSCLDNRPLNFAEW 421

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +  RP ++ VSATPG WE+E+  G+  EQ+IRPTGLVDP   IR    QV+D+  E    
Sbjct: 422 DKFRPQSLFVSATPGPWEMERTGGVFAEQVIRPTGLVDPITIIRPVEHQVDDLLAECRTT 481

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             +G R+L+T LTKRMAEDLT+Y+ E  IRVRY+HS+V TLERIEIIRDLR+G FDVL+G
Sbjct: 482 IGKGRRVLVTTLTKRMAEDLTDYMNEAGIRVRYLHSDVDTLERIEIIRDLRMGAFDVLIG 541

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           INLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV  +V+LYAD +T S+ 
Sbjct: 542 INLLREGLDIPECSLVAILDADKEGFLRSRTSLIQTIGRAARNVEGRVLLYADKMTDSLT 601

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
            A++ET RRREKQ+  N +H I PQSV++ I +++  +  +D  T     D        +
Sbjct: 602 YAVEETARRREKQIAWNTEHGITPQSVRKNISDIVSSVFEQDYVTIAPDEDTGVAEFVGQ 661

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              A +  L K+M  AA  L FE AAR+RDEI+RL++
Sbjct: 662 DLGAAIAGLEKRMRSAAAELEFETAARLRDEIQRLEA 698


>gi|332091058|gb|EGI96148.1| excinuclease ABC, B subunit [Shigella dysenteriae 155-74]
          Length = 673

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 476/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D IVV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+    TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVWPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|37525442|ref|NP_928786.1| excinuclease ABC subunit B [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81834028|sp|Q7N6Q1|UVRB_PHOLL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|36784870|emb|CAE13784.1| exinuclease ABC subunit B [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 669

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/664 (55%), Positives = 477/664 (71%), Gaps = 4/664 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +D+ P GDQP AI QL +G+      Q LLGVTGSGKTFT+A VI  + RP +V
Sbjct: 3   KVFKLHSDFQPGGDQPEAIRQLQEGLEDGLAHQTLLGVTGSGKTFTVANVIANLNRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLYSE K+FFP N+VEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYSEMKDFFPENSVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D IVV+SVS IYG+G  +SY +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVIVVASVSAIYGLGDPDSYLKMMLHLTNGMMIDQRSILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  ++ A RV +F +++E +S F PLTGQ   +V    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDEHALRVELFDDEVERLSLFDPLTGQVQYHVPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  AM+ IK EL+ R   L   G+LLE QR+ QR  +DLEM+   G 
Sbjct: 243 VYPKTHYVTPRERIIQAMEAIKIELEQRRKVLLANGKLLEEQRITQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRTEGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFR+PS +DNRPLRFEE+  L P TI +SATPG +ELE+  G +VEQ++RPTGL+DP 
Sbjct: 363 EYGFRMPSALDNRPLRFEEFEALAPQTIYISATPGKYELEKSSGDVVEQVVRPTGLLDPE 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 VEVRPVATQVDDLLSEIRIRAVKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN++ K ILY D IT S+  AI ET RRR KQ   N+KH I P+ + +KI +++     
Sbjct: 543 ARNLHGKAILYGDKITDSMAKAIGETERRRAKQQIFNEKHGIVPKGLNKKINDILQIGQP 602

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      ++      +LS K+ ++ ++ L  +M+  A +L FE+AA +RD+++ L+
Sbjct: 603 AGGKRKGRGKAVATAETFSNLSAKELESKIRELEAKMYQHAQDLEFEQAASVRDQVQALR 662

Query: 795 SSPY 798
               
Sbjct: 663 EQFI 666


>gi|294085777|ref|YP_003552537.1| excinuclease ABC subunit B [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665352|gb|ADE40453.1| excinuclease ABC, B subunit [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 732

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/707 (58%), Positives = 524/707 (74%), Gaps = 9/707 (1%)

Query: 93  EISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGD 152
           EI++    P   A A+      P      +        I   ++    F +Q+D+ P+GD
Sbjct: 3   EIAKNNAAPDSTAAAKAAPDKLPEKLADNL--------IITRARAPADFDLQSDFKPAGD 54

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           QP AIA+L++G+   E+ Q+LLGVTGSGKTFT A VI  M+RP +++APNK LAAQLY E
Sbjct: 55  QPTAIAELIEGVKQGERDQVLLGVTGSGKTFTAAHVIREMKRPTLILAPNKTLAAQLYGE 114

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            K+ FP NAVEYFVSYYDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATRSLLER+D 
Sbjct: 115 MKSLFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRSLLERDDV 174

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           I+V+SVSCIYGIGSVE+YS M  ++  G+   ++++L    + QYKR D   +RGTFRV 
Sbjct: 175 IIVASVSCIYGIGSVETYSTMTQKITSGEDFPRQDMLRKFTELQYKRNDTNFVRGTFRVR 234

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GDS+E+FP+HLED AWR+S+FG+++E I EF PLTG+K  ++ TI ++ANSHYVTPRPTL
Sbjct: 235 GDSVELFPAHLEDRAWRISLFGDEVESIHEFDPLTGEKFASLPTITVFANSHYVTPRPTL 294

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
             A K IK ELK RL EL +  +LLEAQR+EQR  +D+EM+E TG C  IENYSRYL+GR
Sbjct: 295 QQACKSIKIELKQRLAELTEANKLLEAQRIEQRTQFDVEMIEATGVCAGIENYSRYLSGR 354

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
            PGEPPPTLFEY+PE++LL VDESHVT+PQ+  MY+GDF RK+TLAE+GFRLPSCMDNRP
Sbjct: 355 GPGEPPPTLFEYLPENALLIVDESHVTVPQLGAMYKGDFARKSTLAEHGFRLPSCMDNRP 414

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           L+FEEW   RP TI VSATPG +E+E+  G+  EQI+RPTGL+DP   +R    QV+D+ 
Sbjct: 415 LKFEEWEGFRPQTIYVSATPGKYEMERTGGVFSEQIVRPTGLIDPECIVRPTGNQVDDII 474

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            E   AA +G R+L+T LTK+MAE L+EY++E  ++VRY+HS++ TLERIEI+RDLRLG 
Sbjct: 475 AECRDAAAKGQRVLITTLTKKMAEALSEYMFEAGLKVRYLHSDIDTLERIEIMRDLRLGV 534

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           FD+L+GINLLREGLDIPEC LV ILDADKEGFLRSKTSL+QTIGRAARNV  +VILY D 
Sbjct: 535 FDILIGINLLREGLDIPECALVGILDADKEGFLRSKTSLVQTIGRAARNVEGRVILYGDR 594

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
           IT S+Q A+DET RRR KQ   NK H I P+SVK+ I +V+  +  + A         + 
Sbjct: 595 ITDSMQYALDETNRRRAKQEAWNKAHGITPESVKKDIADVLGSVY-DRADHLTPQAGGKD 653

Query: 753 LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
            +L     K  +  L   M  AA NL FEEAAR+RDEI+R++++   
Sbjct: 654 GALVGNNFKTVIADLEASMKDAAANLEFEEAARLRDEIRRMEAAELG 700


>gi|153854478|ref|ZP_01995756.1| hypothetical protein DORLON_01751 [Dorea longicatena DSM 13814]
 gi|149753004|gb|EDM62935.1| hypothetical protein DORLON_01751 [Dorea longicatena DSM 13814]
          Length = 667

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/660 (53%), Positives = 476/660 (72%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F+++  Y P+GDQP AIA+L+KG     + Q LLGVTGSGKTFTMA VI+ +Q+P +
Sbjct: 6   MNEFKLKAPYKPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLQKPTL 65

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAYVP +DTYI K+SS+NE+ID+
Sbjct: 66  VIAHNKTLAAQLYGEFKEMFPENAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSVNEEIDK 125

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT +L+ER D IV++SVSCIYG+G  E++ QM+V L+ G   ++ E+L  L+  QY
Sbjct: 126 LRLSATAALIERRDVIVIASVSCIYGLGEPENFEQMMVSLRPGMEKDRDEVLRQLIDIQY 185

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD++EI P+   D A RV  FG++I+ ISE   LTG+    +  I
Sbjct: 186 DRNDMDFKRGTFRVRGDTVEIVPADRGDTAIRVEFFGDEIDRISEIDMLTGEVKNTLNHI 245

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV P+  +  A++ I+ EL+ ++   + EG+LLEAQR+ +R  +D+EM+  TG
Sbjct: 246 AIFPASHYVVPKERMEKAIRNIEIELEEQVKYFKSEGKLLEAQRIAERTNFDIEMMRETG 305

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L G  PG+PP TL +Y P+D ++ +DESH T+PQI GMY GD  RK TL
Sbjct: 306 FCSGIENYSRHLAGLAPGQPPNTLMDYFPDDFIIMIDESHKTVPQIGGMYHGDQSRKRTL 365

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL F+E+       + VSATPG +E E  + +  EQ+IRPTGL+DP
Sbjct: 366 VEYGFRLPSALDNRPLSFDEFESKIDQVMFVSATPGKYEEEH-ELLRAEQVIRPTGLLDP 424

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++D+  E+N       +IL+T LTKRMAEDLT+Y+ E  IRVRY+HS++ 
Sbjct: 425 EVEVRPVEGQIDDLIGEVNKEIANKHKILITTLTKRMAEDLTDYMRELGIRVRYLHSDID 484

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EI+RD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 485 TLERTEIVRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGR 544

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YADTIT S++ A+DET RRRE Q+ +N++H I P+++++ + ++I   +
Sbjct: 545 AARNAEGHVIMYADTITDSMRAALDETQRRREVQMAYNEEHGITPKTIQKAVRDLI--AV 602

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            +  A + + ++    S+S+K+ +  +K L KQM  AA +LNFE AA +RD++  LK + 
Sbjct: 603 SKKVAASEVQMEKDPESMSEKELEKLIKELEKQMKKAAADLNFEAAAELRDKLIELKKTL 662


>gi|99079985|ref|YP_612139.1| excinuclease ABC subunit B [Ruegeria sp. TM1040]
 gi|99036265|gb|ABF62877.1| Excinuclease ABC subunit B [Ruegeria sp. TM1040]
          Length = 730

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/678 (63%), Positives = 529/678 (78%), Gaps = 2/678 (0%)

Query: 118 KNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVT 177
           K   +                  F MQT + P+GDQP AIA+L +G+   E+ Q+LLG T
Sbjct: 8   KTLPMMADRAPERREKLEGG-KKFVMQTAFSPAGDQPTAIAELSQGVLDGERDQVLLGAT 66

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G+GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP NAVEYFVS+YDYYQPEAY
Sbjct: 67  GTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSFYDYYQPEAY 126

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
           VPR+DTYIEKES INEQIDRMRHSATR+LLER+D I+++SVSCIYGIGSVE+YS M   L
Sbjct: 127 VPRSDTYIEKESQINEQIDRMRHSATRALLERDDVIIIASVSCIYGIGSVETYSAMTQDL 186

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
            +G   +Q+++++ LV QQYKR D    RG FRV GD++EIFP+HLED AW++S FG ++
Sbjct: 187 IVGQDYDQRQIMADLVAQQYKRNDQAFQRGAFRVRGDTLEIFPAHLEDRAWKLSFFGEEL 246

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           E I+EF PLTG++  + E I++YANSHYVTP+PTLN A+  IK EL+ RL  L  EG+LL
Sbjct: 247 ESITEFDPLTGERTGSFEKIRVYANSHYVTPKPTLNQAVISIKNELRQRLDNLVSEGKLL 306

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESH 477
           EAQRLEQR  +D+EMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESH
Sbjct: 307 EAQRLEQRTNFDIEMLEATGHCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESH 366

Query: 478 VTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537
           V++PQI GMY+GD  RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+
Sbjct: 367 VSVPQIGGMYKGDHRRKMTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEM 426

Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           EQ  G+  EQ+IRPTGL+DP VEIR    QV+D+ DEI     +G R L TVLTKRMAED
Sbjct: 427 EQSGGVFAEQVIRPTGLLDPEVEIRPVGMQVDDLLDEIRDVTARGYRTLATVLTKRMAED 486

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTEYL+E+ I+VRYMHS++ T+ERIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAIL
Sbjct: 487 LTEYLHEQGIKVRYMHSDIDTIERIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAIL 546

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           DADKEGFLRS+TSLIQTIGRAARN   KVI+YAD IT S++ AI ET RRREKQ+ +N++
Sbjct: 547 DADKEGFLRSETSLIQTIGRAARNSEGKVIMYADRITGSMERAIAETNRRREKQIAYNEE 606

Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
           H I P++VK+ + +V+  +   D   + ++    +  L     +AHL  LR+QM  AA+N
Sbjct: 607 HGITPETVKKNVDDVLAGLYEGDTDMSRVTATIDK-PLHGANFEAHLDGLREQMRKAAEN 665

Query: 778 LNFEEAARIRDEIKRLKS 795
           L FEEAAR+RDE+KRL++
Sbjct: 666 LEFEEAARLRDEVKRLEA 683


>gi|114328889|ref|YP_746046.1| excinuclease ABC subunit B [Granulibacter bethesdensis CGDNIH1]
 gi|114317063|gb|ABI63123.1| excinuclease ABC subunit B [Granulibacter bethesdensis CGDNIH1]
          Length = 746

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/654 (62%), Positives = 525/654 (80%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +DY P GDQP+AI +L+ G+   E+ Q+LLGVTGSGKTFTMAKVIE MQRPA+++AP
Sbjct: 39  EVVSDYKPDGDQPSAIRELVSGLRQGERNQVLLGVTGSGKTFTMAKVIEEMQRPALILAP 98

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVPRTDTYIEK++ INEQIDRMRH+
Sbjct: 99  NKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPRTDTYIEKDAQINEQIDRMRHA 158

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT++LLERND I+V+SVSCIYGIGSVE+Y++M+V+L++G  +++  L  +LV  QY+R D
Sbjct: 159 ATQALLERNDVIIVASVSCIYGIGSVETYAKMVVRLQVGGQIDRDALARALVDLQYRRND 218

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               RGTFR+ G++++IFP+  ED AWR+S+FG++I+ ISEF PLTG     +E   +YA
Sbjct: 219 AAFQRGTFRMRGETVDIFPASHEDRAWRISLFGDEIDAISEFDPLTGNVTAKLEEAVVYA 278

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
           NSHYVTPRPTL+ A+K IK+EL+ RL E + EG++LEA+RL QR+T+D+EM+ETTGSC+ 
Sbjct: 279 NSHYVTPRPTLSQAIKEIKQELQQRLAEFDAEGKVLEAERLRQRVTFDIEMMETTGSCKG 338

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSRYL+GR PG+PPPTLFEY+P++++L VDESHVT+PQI GM RGD  RK+ L+E+G
Sbjct: 339 IENYSRYLSGRAPGDPPPTLFEYLPDNAILIVDESHVTVPQIGGMERGDHARKSILSEFG 398

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPSC+DNRPL+F+EW   RP T+ VSATPG WE+EQ  G+  EQ+IRPTGL+DP  EI
Sbjct: 399 FRLPSCIDNRPLKFDEWERFRPETVFVSATPGPWEMEQTGGVFAEQVIRPTGLIDPITEI 458

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R    QV+D+  EI L   +G R+L+T LTKRMAEDLTEYL E  ++VRY+HS+V TLER
Sbjct: 459 RPVEHQVDDLLAEIRLVTAKGNRVLVTTLTKRMAEDLTEYLTEHGVKVRYLHSDVDTLER 518

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           IEIIRDLR+G FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARN
Sbjct: 519 IEIIRDLRVGVFDVLIGINLLREGLDIPECSLVAILDADKEGFLRSQTSLIQTIGRAARN 578

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           V  +VILYADT+T+S+  A++ET RRRE+Q   N+ H I P +V+++I ++++ +  +D 
Sbjct: 579 VEGRVILYADTMTRSLTFAVEETARRRERQKAWNEAHGITPTTVRKQIGKMLESVFEQDY 638

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            T   +          K  +A +  L ++M  AA +L FEEA R+RDEI+RL++
Sbjct: 639 VTVAPTSATSAAEFVGKDLRASITELERRMRAAAADLEFEEAGRLRDEIRRLEA 692


>gi|162147890|ref|YP_001602351.1| excinuclease ABC subunit B [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542507|ref|YP_002274736.1| excinuclease ABC subunit B [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786467|emb|CAP56049.1| putative UvrABC system protein B [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209530184|gb|ACI50121.1| excinuclease ABC, B subunit [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 743

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/693 (60%), Positives = 531/693 (76%), Gaps = 5/693 (0%)

Query: 111 QSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKV 170
           ++  P   +  +            ++ +T   +Q+ Y P+GDQP AI +L+ G+   E+ 
Sbjct: 8   KTRRPDPSDEIVTFQPERQPPKEKTRRLT---IQSPYEPAGDQPRAIGELVAGVEGGERD 64

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           Q+LLGVTGSGKTFTMAK+IEA Q+P +++APNK LAAQLY E K FFP NAVEYFVSYYD
Sbjct: 65  QVLLGVTGSGKTFTMAKIIEATQKPTLILAPNKTLAAQLYGEMKQFFPDNAVEYFVSYYD 124

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
           YYQPEAYVPR+DTYIEK+S INEQIDRMRH+AT++LLERND I+V+SVSCIYGIGSVE+Y
Sbjct: 125 YYQPEAYVPRSDTYIEKDSQINEQIDRMRHAATQALLERNDVIIVASVSCIYGIGSVETY 184

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           S+M+V+L++G  +++  L+ +LV  QY+R D    RGTFRV G+S+++FP   ED AWR+
Sbjct: 185 SRMVVRLEVGGEIDRDRLVKALVDLQYRRNDAAFQRGTFRVRGESVDVFPVQNEDRAWRI 244

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
           S+FG++I+ I+EF PLTG K  +++ + IYANSHYVTPRPTLN A+  IK EL+ RL +L
Sbjct: 245 SLFGDEIDAITEFDPLTGDKTGDLQEVSIYANSHYVTPRPTLNQAVIGIKHELRQRLNDL 304

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +EG+LLEA+RL+QR T+DLEM+ETTG C+ IENYSRYL+GR PG+PPPTLFEY+PED+L
Sbjct: 305 TEEGKLLEAERLQQRTTFDLEMIETTGVCKGIENYSRYLSGRQPGDPPPTLFEYLPEDAL 364

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
           L VDESHVT+PQI GM RGDF RK+ L+E+GFRLPSC+DNRPL+F EW+  RP TI VSA
Sbjct: 365 LIVDESHVTVPQIGGMERGDFARKSILSEFGFRLPSCLDNRPLKFAEWDLFRPQTIFVSA 424

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
           TPG WE+E+  G+  EQ+IRPTGL+DP  +IR    QV+D+  E  L    G R+L+T L
Sbjct: 425 TPGPWEMERVGGVFAEQVIRPTGLIDPVTDIRPVERQVDDLLAECRLTIAAGGRVLVTTL 484

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKRMAEDLT+Y+ E  IRVRY+HS+V TLERIEIIRDLRLG FDVL+GINLLREGLDIPE
Sbjct: 485 TKRMAEDLTDYMNEAGIRVRYLHSDVDTLERIEIIRDLRLGAFDVLIGINLLREGLDIPE 544

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
           C LVAILDADKEGFLRS+TSL+QTIGRAARNV+ +V+LYAD +T S++ AI+ET RRREK
Sbjct: 545 CSLVAILDADKEGFLRSRTSLVQTIGRAARNVDGRVVLYADKMTDSLRYAIEETARRREK 604

Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQ 770
           Q   N  H I PQSV+++I E +  +  +D  T   + D        K   + +  L K+
Sbjct: 605 QSAWNAAHGITPQSVRKQIGEALSSVFEQDYVTVAPTKDGDVAEFVGKDLGSAIAELEKR 664

Query: 771 MHLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           M  AA +L FE AAR+RDEIKRL++     GLD
Sbjct: 665 MRAAAADLEFETAARLRDEIKRLEALEL--GLD 695


>gi|251792934|ref|YP_003007660.1| excinuclease ABC subunit B [Aggregatibacter aphrophilus NJ8700]
 gi|247534327|gb|ACS97573.1| hypothetical protein NT05HA_1213 [Aggregatibacter aphrophilus
           NJ8700]
          Length = 697

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/674 (55%), Positives = 487/674 (72%), Gaps = 9/674 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + +D++PSGDQP AIA+L + +      Q LLGVTGSGKTFT+A VI  + RPA
Sbjct: 23  NTKPFILHSDFNPSGDQPQAIAKLAENLEDGLAHQTLLGVTGSGKTFTIANVIAQLNRPA 82

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI+
Sbjct: 83  MLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIE 142

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  + Q+++L+ L + Q
Sbjct: 143 QMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIINQRQILAKLAELQ 202

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV G+ I+IFP+  ++ A R+ +F ++IE +S F PLTG     +  
Sbjct: 203 YTRNDQAFQRGTFRVRGEIIDIFPAESDERAVRIELFDDEIERLSLFDPLTGSSFGTIPR 262

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y  +HYVTPR  +  A++ IK EL  R     KE +LLE QR+ QR  +D+EM+   
Sbjct: 263 FTVYPKTHYVTPRERILDAIEKIKVELAQRREYFIKENKLLEEQRISQRTQFDIEMMNEL 322

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK T
Sbjct: 323 GYCSGIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKET 382

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+D
Sbjct: 383 LVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLD 442

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EIR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++
Sbjct: 443 PQIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDI 502

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 503 DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 562

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN+N K ILYAD+ITKS++ AI ET RRREKQ ++N+ H I PQ++ +K+ E++D  
Sbjct: 563 RAARNLNGKAILYADSITKSMEKAITETNRRREKQTKYNEVHGIVPQALNKKVGELLDIG 622

Query: 737 LLEDAATTNISIDAQ---------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
              +          +          L  S K+ +  +K L +QM+  A +L FE+AA +R
Sbjct: 623 QGANQKVKANKQRGKMVAEPTALYALPTSPKEYQQQIKKLEQQMYKFAQDLEFEKAAAVR 682

Query: 788 DEIKRLKSSPYFQG 801
           D++++L+ S    G
Sbjct: 683 DQLQQLRESFMLSG 696


>gi|52425426|ref|YP_088563.1| excinuclease ABC subunit B [Mannheimia succiniciproducens MBEL55E]
 gi|81825519|sp|Q65ST2|UVRB_MANSM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|52307478|gb|AAU37978.1| UvrB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 678

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/671 (55%), Positives = 481/671 (71%), Gaps = 8/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + +++ PSGDQP AI  L + ++     Q LLGVTGSGKTFT+A VI  + RPA++
Sbjct: 8   KPFILHSEFKPSGDQPQAIEILAENLNDGLAHQTLLGVTGSGKTFTIANVIAKLNRPAML 67

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++M
Sbjct: 68  LAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQM 127

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+S LER D IVV+SVS IYG+G  +SY +M++ L+ G  ++Q+++L  L + QY 
Sbjct: 128 RLSATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQTGAIIDQRQILVRLAELQYT 187

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V    
Sbjct: 188 RNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGTGFGAVPRFT 247

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A++ IK EL  R     KE +LLE QR+ QR  +D+EM+   G 
Sbjct: 248 VYPKTHYVTPREQILDAIEKIKSELADRREYFIKENKLLEEQRITQRTQFDIEMMNELGY 307

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GRN GEPPPTLF+Y+P D+LL +DESHVT+PQI GMYRGD  RK TL 
Sbjct: 308 CSGIENYSRYLSGRNEGEPPPTLFDYMPSDALLVIDESHVTVPQIGGMYRGDRSRKETLV 367

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+DP 
Sbjct: 368 EYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGTEIIDQVVRPTGLLDPE 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR    QV+D+  E    A +  R+L+T LTKRMAEDLT+YL E  IRVRY+HS++ T
Sbjct: 428 IEIRPVSIQVDDLLSEARQRADRNERVLVTTLTKRMAEDLTDYLDEHGIRVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  K ILYAD IT S++ AI ET RRREKQ+++N++H I PQ + +K+ E++D    
Sbjct: 548 ARNLKGKAILYADRITNSMEKAITETNRRREKQMKYNEEHGITPQGLNKKVGELLDIGQG 607

Query: 739 EDAATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
               + N     +           ++ K+ +  +K L +QM+  A +L FE+AA IRD++
Sbjct: 608 GSNKSRNKPRSQKAAEPATTYAIPMTAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRDQL 667

Query: 791 KRLKSSPYFQG 801
            +L+      G
Sbjct: 668 HKLREQFVENG 678


>gi|254466362|ref|ZP_05079773.1| excinuclease ABC, B subunit [Rhodobacterales bacterium Y4I]
 gi|206687270|gb|EDZ47752.1| excinuclease ABC, B subunit [Rhodobacterales bacterium Y4I]
          Length = 732

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/678 (63%), Positives = 533/678 (78%), Gaps = 2/678 (0%)

Query: 118 KNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVT 177
           K+  + T                F M T + P+GDQPAAI +L +G+   E+ Q+LLG T
Sbjct: 8   KSMPMMTQRAPQQRPKLEGG-RRFVMNTTFDPAGDQPAAIKELSQGVMEGERNQVLLGAT 66

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G+GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP N+VEYFVS+YDYYQPEAY
Sbjct: 67  GTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPENSVEYFVSFYDYYQPEAY 126

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
           VPR+DTYIEKES INEQIDRMRHSATRSLLER+D I+++SVSCIYGIGSVE+YS M   L
Sbjct: 127 VPRSDTYIEKESQINEQIDRMRHSATRSLLERDDVIIIASVSCIYGIGSVETYSAMTQDL 186

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           K G+  +Q+++++ LV QQYKR D    RG+FRV GD++EIFP+HLED AW++S FG ++
Sbjct: 187 KAGEMYDQRQIMADLVAQQYKRNDQAFQRGSFRVRGDTLEIFPAHLEDRAWKLSFFGEEL 246

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           E+I+EF PLTG+K  + + I++YANSHYVTP+PTLN A+  IK+ELKMRL +L  EG+LL
Sbjct: 247 EQITEFDPLTGEKTGSFDQIRVYANSHYVTPKPTLNQAVISIKQELKMRLDQLVGEGKLL 306

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESH 477
           EAQRLEQR  +D+EMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESH
Sbjct: 307 EAQRLEQRTNFDIEMLEATGHCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESH 366

Query: 478 VTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537
           V++PQI GMYRGD  RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WEL
Sbjct: 367 VSVPQIGGMYRGDHRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEL 426

Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           EQ  G+  EQ+IRPTGL+DP VEIR    QV+D+ DE+      G R L+T LTKRMAED
Sbjct: 427 EQAGGVFTEQVIRPTGLLDPEVEIRPVSMQVDDLLDEVRKVTADGFRTLVTTLTKRMAED 486

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTEYL+E+ I+VRYMHS++ TLERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAIL
Sbjct: 487 LTEYLHEQGIKVRYMHSDIDTLERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAIL 546

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           DADKEGFLRS+TSLIQTIGRAARN + +VI+YAD IT S++ A+DET RRREKQ+ +N +
Sbjct: 547 DADKEGFLRSETSLIQTIGRAARNADGRVIMYADKITGSMERALDETNRRREKQIAYNLE 606

Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
           H I P++VK+ + +V+  +   D     ++    +  +     +AHL  LR  M  AA+N
Sbjct: 607 HGITPETVKKNVEDVLAGLYEGDVDMNRVTAQIGK-PMHGANLEAHLNGLRDDMRKAAEN 665

Query: 778 LNFEEAARIRDEIKRLKS 795
           L FEEAAR+RDEIKRL++
Sbjct: 666 LEFEEAARLRDEIKRLEA 683


>gi|319650564|ref|ZP_08004704.1| UvrABC system protein B [Bacillus sp. 2_A_57_CT2]
 gi|317397745|gb|EFV78443.1| UvrABC system protein B [Bacillus sp. 2_A_57_CT2]
          Length = 659

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/656 (55%), Positives = 474/656 (72%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI ++++GI+S +K Q LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 5   FELVSKYSPQGDQPGAIKKIVEGINSGKKHQTLLGATGTGKTFTVSNVIQEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKDFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E YS+M++ L+ G  +E+ +LL  LV  QY+R 
Sbjct: 125 SATSSLFERKDVIIIASVSCIYGLGSPEEYSEMVLSLRTGMEIERNQLLHRLVDIQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ +   E + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEIMGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL +  +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRIAVQNIEKELEERLAELRENDKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PG  P TL +Y PED L+ +DESHVT+PQI GM+ GD  RK+ L ++
Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPEDFLIVIDESHVTLPQIRGMFNGDQARKSVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL F E+       + VSATPG +ELE    +I EQIIRPTGL+DP ++
Sbjct: 365 GFRLPSAMDNRPLTFTEFEKHVKQAVFVSATPGPYELEHTPEMI-EQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    Q+  R+L+T LTK+M+EDLT+YL E  I+V+Y+HSEVKTLE
Sbjct: 424 VRPIEGQIDDLIGEIQDRIQKNERVLVTTLTKKMSEDLTDYLKEIGIKVQYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIR+LRLGK+DVLVGINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRELRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YAD IT S++ AI ET RRR  Q E+NKKH I P ++++ I + I      +
Sbjct: 544 NANGHVIMYADRITDSMEKAISETKRRRSIQEEYNKKHGITPMTIQKDIRDSIRATHAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                    A+   L+KK+ +  +  + K+M  AA +LNFE AA +RD I  LK+ 
Sbjct: 604 EQE-EYQPSAKLGKLNKKEREKLIGDMEKEMKEAAKSLNFERAAELRDLILELKAE 658


>gi|114770189|ref|ZP_01447727.1| excinuclease ABC subunit B [alpha proteobacterium HTCC2255]
 gi|114549026|gb|EAU51909.1| excinuclease ABC subunit B [alpha proteobacterium HTCC2255]
          Length = 727

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/663 (62%), Positives = 527/663 (79%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
              +    F +++ + P+GDQP AI +L++G+   E+ Q+LLG TG+GKTFTMAK+IE  
Sbjct: 17  KKLEGGQKFVLKSPFEPAGDQPVAINELVQGLADGEQNQVLLGATGTGKTFTMAKIIEQT 76

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRPAI++APNK LAAQL+ EFKNFFP N+V+YFVS+YDYYQPEAYV R+DTYIEKES IN
Sbjct: 77  QRPAIILAPNKTLAAQLFGEFKNFFPDNSVQYFVSFYDYYQPEAYVARSDTYIEKESQIN 136

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           EQIDRMRH+ATRSLLER+D I+V+SVSCIYGIGSVE+Y  M   L  G+   Q+++++ L
Sbjct: 137 EQIDRMRHAATRSLLERDDVIIVASVSCIYGIGSVETYGAMTQDLISGNEYNQRQVMADL 196

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V QQYKR D G  RG+FRV GD++EI+P+HL+D  WR+S FG+++E I EF  LTG+K  
Sbjct: 197 VAQQYKRNDTGFSRGSFRVRGDTLEIWPAHLDDRGWRLSFFGDELEAIQEFDTLTGEKSA 256

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            +E++++YANSHYVTPRPT+  AMK IK EL  RL +L  EG+LLEAQRLEQR  +DLEM
Sbjct: 257 LLESVRVYANSHYVTPRPTMQQAMKGIKAELVTRLKQLNDEGKLLEAQRLEQRTNFDLEM 316

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           LE TG C  IENYSRYLTGR PGEPPPTLFEYIP+++++F DESHV +PQI GMYRGD+ 
Sbjct: 317 LEATGVCNGIENYSRYLTGRAPGEPPPTLFEYIPDNAIVFADESHVAVPQIGGMYRGDYR 376

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL+E+GFRLPSC DNRPL+FEEW+ +RP ++ VSATP  WELEQ  GI  EQIIRPT
Sbjct: 377 RKITLSEHGFRLPSCTDNRPLKFEEWDAMRPQSVFVSATPQKWELEQSGGIFAEQIIRPT 436

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DPP+EIR   TQV+D+  EI +  +QG R+L+T LTKRM+EDLTEYL+E+ IRVRYM
Sbjct: 437 GLLDPPIEIRPVDTQVDDLLSEIRIVIEQGNRVLVTTLTKRMSEDLTEYLHEQGIRVRYM 496

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++ TLERIEI+RDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSL+
Sbjct: 497 HSDIDTLERIEILRDLRLGAFDVLIGINLLREGLDIPECSLVAILDADKEGFLRSETSLV 556

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN   +VI+Y D +T S++ AI ET RRRE+Q+++N K+NI P+++K+ + ++
Sbjct: 557 QTIGRAARNSEGRVIMYGDKVTGSMERAISETNRRRERQIKYNIKNNITPETIKKNVEDI 616

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           +      D   + I+    +  L     +AHL SLRK M  AA+NL FE+AARIRDE+KR
Sbjct: 617 MGGTFEGDTDESRITAKIDKKPLVGANLQAHLDSLRKDMIKAAENLEFEDAARIRDEVKR 676

Query: 793 LKS 795
           L++
Sbjct: 677 LEA 679


>gi|94309964|ref|YP_583174.1| excinuclease ABC subunit B [Cupriavidus metallidurans CH34]
 gi|93353816|gb|ABF07905.1| excinuclease of nucleotide excision repair, DNA damage recognition
           component [Cupriavidus metallidurans CH34]
          Length = 697

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/668 (55%), Positives = 489/668 (73%), Gaps = 4/668 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+   Y P+GDQP AI QL++G+      Q LLGVTGSGKTFTMA VI  M RPAIV
Sbjct: 22  SPFQLYQPYSPAGDQPEAIRQLVEGVEDGLSYQTLLGVTGSGKTFTMANVIARMGRPAIV 81

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I++M
Sbjct: 82  FAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQM 141

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+SLLER D I+V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  QY 
Sbjct: 142 RLSATKSLLERRDTIIVATVSAIYGIGNPSEYHQMILTLRTGDKISQRDVIARLIAMQYT 201

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +    RGTFRV GD+++IFP+   ++A RV +F ++++ +  F PLTG+  + +    
Sbjct: 202 RNETDFQRGTFRVRGDTLDIFPAEHAEMAVRVELFDDEVDSLQFFDPLTGRVRQKIPRFT 261

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +SHYVTPR T+  A++ IK EL+ RL    KE RL+EAQRLEQR  +DLEML   G 
Sbjct: 262 VYPSSHYVTPRETVLRAIEDIKVELRERLDFFYKENRLVEAQRLEQRTRFDLEMLTELGF 321

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHV I Q++GMY GD  RK TL 
Sbjct: 322 CKGIENYSRHLSGAKPGEPPPTLVDYLPPDALMFLDESHVLIGQLNGMYNGDRARKTTLV 381

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+F+E+       + V+ATP ++E E   G +VEQ++RPTGLVDP 
Sbjct: 382 EYGFRLPSALDNRPLKFDEYERKMRQAVFVTATPANYEKEHA-GQVVEQVVRPTGLVDPV 440

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R A TQV+D+  EI+   +   R+L+T LTKRMAE LTE+L E  ++VRY+HS++ T
Sbjct: 441 IEVRPATTQVDDLLGEIHQRVKVNERVLVTTLTKRMAEQLTEFLSENGVKVRYLHSDIDT 500

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 501 VERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA 560

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILY D +T S+++AI ET RRREKQ+  N+ + I P+ V ++I ++ID +  
Sbjct: 561 ARNVNGTAILYGDRMTDSMKVAIRETERRREKQMAFNEANGITPRGVVKRIKDIIDGVYN 620

Query: 739 EDAATTNISIDAQQ---LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            D     ++  A++     +S+K+    +K L KQM   A NL FE+AA++RD++ +L+S
Sbjct: 621 ADDVKAELTAAAERARYEDMSEKQVAKEIKRLEKQMLDHAKNLEFEKAAQVRDQLAKLRS 680

Query: 796 SPYFQGLD 803
             +  G +
Sbjct: 681 QVFGAGAE 688


>gi|117920610|ref|YP_869802.1| excinuclease ABC subunit B [Shewanella sp. ANA-3]
 gi|117612942|gb|ABK48396.1| Excinuclease ABC subunit B [Shewanella sp. ANA-3]
          Length = 673

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/665 (54%), Positives = 479/665 (72%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ + P+GDQP AIA+L+ G+ S    Q LLGVTGSGKTFT+A VI  + RP I+
Sbjct: 4   SVFQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAQLGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD++ Q+++L  L + QY 
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYMKMLLHLRQGDTMGQRDILKRLSELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ + RGTFR  G+ I+IFP+  +    RV +F ++IE +SEF PLTGQ ++ +    
Sbjct: 184 RNDLELQRGTFRARGEVIDIFPADSDRYGIRVELFDDEIERLSEFDPLTGQIVKRIARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A + IK+EL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKTHYVTPREKILEATESIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP  +EL++  G IVEQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNPYELDKSGGEIVEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    QV+D+  E+        R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVSIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD IT+S+  A+ ET RRREKQ  +N +H I P+ V ++I +V+D    
Sbjct: 544 ARNVNGKVILYADRITQSMAKAMGETERRREKQHAYNLEHGIVPKGVVKRITDVMDVDDG 603

Query: 739 EDAAT--------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            D                 A++      +    +  L KQMH  A NL FE+AA +RDE+
Sbjct: 604 RDTEKGYSPSSLGKVAEPKAKRYQADAAQLSHDIDKLEKQMHEHARNLEFEQAAALRDEV 663

Query: 791 KRLKS 795
           KRL+ 
Sbjct: 664 KRLRE 668


>gi|260914232|ref|ZP_05920705.1| excision endonuclease subunit UvrB [Pasteurella dagmatis ATCC
           43325]
 gi|260631865|gb|EEX50043.1| excision endonuclease subunit UvrB [Pasteurella dagmatis ATCC
           43325]
          Length = 677

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/670 (56%), Positives = 490/670 (73%), Gaps = 8/670 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + +D+ PSGDQP AI QL++G+ +    Q LLGVTGSGKTFT+A VI  + RPA
Sbjct: 6   NTKPFILHSDFSPSGDQPQAITQLIEGLENGLAHQTLLGVTGSGKTFTIANVIAKLNRPA 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI+
Sbjct: 66  MLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIE 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+S LER D IVV+SVS IYG+G  +SY +M++ L+ G  + Q+++L+ L + Q
Sbjct: 126 QMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQAGAIINQRQILAQLAELQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV G+ I+IFP+  +D A RV +F ++IE +S F PLTG     V  
Sbjct: 186 YTRNDQAFQRGTFRVRGEIIDIFPAESDDKAVRVELFDDEIERLSLFDPLTGTNFGAVPR 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             IY  +HYVTPR  +  A++ IKEEL  R   L +  +LLE QR+ QR  +D+EM+   
Sbjct: 246 YTIYPKTHYVTPRERILDAIEKIKEELAERKKFLLENNKLLEEQRITQRTQFDIEMMNEL 305

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRYL+GR  GEPPPTLF+YIP D LL +DESHVT+PQI GMYRGD  RK T
Sbjct: 306 GYCSGIENYSRYLSGRKEGEPPPTLFDYIPSDGLLIIDESHVTVPQIGGMYRGDRSRKET 365

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+  G I++Q++RPTGL+D
Sbjct: 366 LVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSNGEIIDQVVRPTGLLD 425

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EIR    QV+D+  E    A+Q  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++
Sbjct: 426 PEIEIRPVAIQVDDLLSEARQRAEQNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDI 485

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 486 DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 545

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-- 734
           RAARN+  K ILYAD IT S++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D  
Sbjct: 546 RAARNLKGKAILYADRITNSMEKAIGETNRRREKQMKYNEEHGIVPQALNKKVGELLDIG 605

Query: 735 ------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                     ++A     S    Q+  + K+ +  +K L +QM+  A +L FE+AA +RD
Sbjct: 606 QGANQKAKANKNAKKVAESTALYQVPQTPKEYQQQIKKLEQQMYKYAQDLEFEKAAAVRD 665

Query: 789 EIKRLKSSPY 798
           ++++L+   +
Sbjct: 666 QLQQLREHFF 675


>gi|114047410|ref|YP_737960.1| excinuclease ABC subunit B [Shewanella sp. MR-7]
 gi|113888852|gb|ABI42903.1| Excinuclease ABC subunit B [Shewanella sp. MR-7]
          Length = 673

 Score =  856 bits (2211), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/665 (55%), Positives = 481/665 (72%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ + P+GDQP AIA+L+ G+ S    Q LLGVTGSGKTFT+A VI  + RP I+
Sbjct: 4   SVFQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAQLGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD++ Q+++L  L + QY 
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDTMGQRDILKRLSELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGTFRV G+ I+IFP+  +    RV +F ++IE +SEF PLTGQ ++ +    
Sbjct: 184 RNDIELQRGTFRVRGEVIDIFPADSDRYGIRVELFDDEIERLSEFDPLTGQIVKRIARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A + IK+EL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKTHYVTPREKILEATESIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP  +ELE+  G IVEQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNPYELEKSDGEIVEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    QV+D+  E+        R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVNIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD IT+S+  A+ ET RRREKQ  +N +H I P+ V ++I +V+D    
Sbjct: 544 ARNVNGKVILYADRITQSMAKAMGETERRREKQRAYNLEHGIVPKGVVKRITDVMDVDDG 603

Query: 739 EDAAT--------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            ++                A++      +    +  L KQMH  A NL FEEAA +RDE+
Sbjct: 604 RESEKGYRQSSLDKVAEPKAKRYQADAAQLSHDIDKLEKQMHEHARNLEFEEAAALRDEV 663

Query: 791 KRLKS 795
           KRL+ 
Sbjct: 664 KRLRE 668


>gi|254511666|ref|ZP_05123733.1| excinuclease ABC, B subunit [Rhodobacteraceae bacterium KLH11]
 gi|221535377|gb|EEE38365.1| excinuclease ABC, B subunit [Rhodobacteraceae bacterium KLH11]
          Length = 728

 Score =  856 bits (2211), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/679 (62%), Positives = 531/679 (78%), Gaps = 1/679 (0%)

Query: 117 LKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGV 176
             + K              +    F M T++ P+GDQP AI +L  G+H  E+ Q+LLG 
Sbjct: 4   AHSDKTQLAADDVRARLKLEGGKSFVMHTEFAPAGDQPTAITELAAGVHEGERDQVLLGA 63

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           TG+GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP N+VEYFVSYYDYYQPEA
Sbjct: 64  TGTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPENSVEYFVSYYDYYQPEA 123

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           YV R+DTYIEKES INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   
Sbjct: 124 YVARSDTYIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYGAMTQD 183

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK+G   +Q+++++ LV QQY+R D    RG+FRV GDS+EI+P+HLED AW++S FG +
Sbjct: 184 LKVGKEYDQRQVMADLVAQQYRRNDQAFQRGSFRVRGDSLEIWPAHLEDRAWKLSFFGEE 243

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           +E+I+EF PLTG+K   +E I++YANSHYVTP+PT+  A+  IK+EL+MRL +L  EG+L
Sbjct: 244 LEQITEFDPLTGEKTDTMEHIRVYANSHYVTPKPTMQQAIIGIKKELRMRLDQLVGEGKL 303

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           LEAQRLEQR  +DLEMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DES
Sbjct: 304 LEAQRLEQRTNFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADES 363

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536
           HV++PQI GMYRGD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WE
Sbjct: 364 HVSVPQIGGMYRGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAKWE 423

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           +EQ  GI  EQ+IRPTGL+DP VEIR    QV+D+ DE+   A  G R L+T LTKRMAE
Sbjct: 424 IEQTGGIFTEQVIRPTGLLDPEVEIRPVSMQVDDLLDEVRKVAADGYRTLVTTLTKRMAE 483

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DLTEYL+E+ I+VRYMHS++ TLERIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAI
Sbjct: 484 DLTEYLHEQGIKVRYMHSDIDTLERIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAI 543

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
           LDADKEGFLRS+TSL+QTIGRAARN + +VI+YAD IT S++ A++ET RRR KQ+ +N+
Sbjct: 544 LDADKEGFLRSETSLVQTIGRAARNADGRVIMYADKITGSMERALNETNRRRAKQIAYNE 603

Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
           +H I P++VK+ + +V+  +   D     ++    +  +     +AHL  LR+QM  AA+
Sbjct: 604 EHGITPETVKKNVEDVLAGLYEGDVDMNRVTATIDK-PMHGANLEAHLDGLREQMRKAAE 662

Query: 777 NLNFEEAARIRDEIKRLKS 795
           NL FEEAA IRDEIKRL++
Sbjct: 663 NLEFEEAANIRDEIKRLEA 681


>gi|329114941|ref|ZP_08243697.1| UvrABC system protein B [Acetobacter pomorum DM001]
 gi|326695838|gb|EGE47523.1| UvrABC system protein B [Acetobacter pomorum DM001]
          Length = 749

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/697 (59%), Positives = 527/697 (75%), Gaps = 2/697 (0%)

Query: 101 PSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKD--ITFFQMQTDYHPSGDQPAAIA 158
            S  + +       P L       P   +     +    +   ++ ++Y P+GDQP AI 
Sbjct: 2   ASKTSSSAARGKKRPSLSERAASLPPVLFEPEKQAPRPRLKRMEVVSEYEPAGDQPQAIR 61

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +L+ G+ + E+ Q+LLGVTGSGKTF+MAK+IEA Q+P +++APNK LAAQLY E K FFP
Sbjct: 62  ELVAGVEAGERDQVLLGVTGSGKTFSMAKIIEATQKPTLILAPNKTLAAQLYGEMKQFFP 121

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
           +NAVEYFVSYYDYYQPEAYVPR+DTYIEK+S INEQIDRMRH+AT++LLERND I+V+SV
Sbjct: 122 NNAVEYFVSYYDYYQPEAYVPRSDTYIEKDSQINEQIDRMRHAATQALLERNDVIIVASV 181

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           SCIYGIGSVE+YS+M+V+L++G  +++ +L+ SLV+ QY+R D    RGTFRV G++I+I
Sbjct: 182 SCIYGIGSVETYSRMVVKLELGGEIDRDKLIKSLVELQYRRNDAAFARGTFRVRGETIDI 241

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP   ED AWRVS+FG++++ + EF PLTG+K  +++ I IYANSHYVTPRPTLN A+K 
Sbjct: 242 FPVQNEDRAWRVSLFGDEVDGLIEFDPLTGEKTADLQEITIYANSHYVTPRPTLNQAIKG 301

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           IK+EL+ +L    K G+LLEA+RL+QR T+DLEMLETTG C+ IENYSRYL+GR PG+PP
Sbjct: 302 IKQELREQLDVFTKAGKLLEAERLDQRTTFDLEMLETTGVCKGIENYSRYLSGRKPGDPP 361

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           PTLFEY+PED+LL VDESHVT+PQI GM RGD  RK+ LAE+GFRLPSC+DNRPL F EW
Sbjct: 362 PTLFEYLPEDALLIVDESHVTVPQIGGMERGDHARKSVLAEFGFRLPSCLDNRPLNFAEW 421

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +  RP ++ VSATPG WE+E+  G+  EQ+IRPTGLVDP   IR    QV+D+  E    
Sbjct: 422 DKFRPQSLFVSATPGPWEMERTGGVFAEQVIRPTGLVDPITIIRPVEHQVDDLLAECRTT 481

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             +G R+L+T LTKRMAEDLT+Y+ E  IRVRY+HS+V TLERIEIIRDLR+G FDVL+G
Sbjct: 482 IAKGGRVLVTTLTKRMAEDLTDYMNEAGIRVRYLHSDVDTLERIEIIRDLRMGAFDVLIG 541

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           INLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV  +V+LYAD +T S+ 
Sbjct: 542 INLLREGLDIPECALVAILDADKEGFLRSRTSLIQTIGRAARNVEGRVLLYADKMTDSLT 601

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
            A++ET RRREKQ+  N +H I PQSV++ I +++  +  +D  T     D        +
Sbjct: 602 YAVEETARRREKQMAWNTEHGITPQSVRKHISDIVSSVFEQDYVTIAPDEDTGVAEFVGQ 661

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              A +  L K+M  AA  L FE AAR+RDEI+RL++
Sbjct: 662 DLGAAIAGLEKRMRSAAAELEFETAARLRDEIQRLEA 698


>gi|291520741|emb|CBK79034.1| excinuclease ABC, B subunit [Coprococcus catus GD/7]
          Length = 663

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/658 (53%), Positives = 467/658 (70%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI QL+KG     + + LLGVTGSGKTFTMA VI  + +P +
Sbjct: 1   MDHFELVSEYAPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID+
Sbjct: 61  ILAHNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+VSSVSCIYG+GS   Y +M++ L+ G   ++ E++  L+  QY
Sbjct: 121 LRHSATAALSERRDVIIVSSVSCIYGLGSPIDYQEMVISLRPGMLKDRDEVIRKLIDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD +EIFP++  D A RV  FG++I+ I+EF  LTG     +E +
Sbjct: 181 VRNDMDFKRGTFRVRGDVVEIFPANATDTAVRVEFFGDEIDRITEFDALTGNVKARLEHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV     +  A+  I+EELK R+   + E +LLEAQR+ +R  +D+EM+  TG
Sbjct: 241 AIFPASHYVVAPEKMEKAISAIEEELKERVEWFKHEDKLLEAQRIAERTKFDIEMMRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L+G  PGEPP TL +Y P+D L+ VDESH+TIPQ+ GMY GD  RK TL
Sbjct: 301 FCSGIENYSRHLSGLKPGEPPHTLLDYFPDDFLMIVDESHITIPQVRGMYAGDQSRKTTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL F+E+       + VSATP  +E E  + +  EQ+IRPTGL+DP
Sbjct: 361 VDYGFRLPSAKDNRPLNFDEFESHISQMLFVSATPNVYEGEH-ELLRAEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    Q++D+  E+N   + G ++L+T LTKRMAEDLT+Y+ E  IRVRY+HS++ 
Sbjct: 420 EISVRPVEGQIDDLISEVNKEIEHGHKVLITTLTKRMAEDLTDYMKELGIRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EI+R+LRL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERSEIVRNLRLNVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD IT S+  AI ET RRR  Q  +N+ H I P+++++ + ++I    
Sbjct: 540 AARNTEGHVIMYADRITDSMDKAITETNRRRAIQQAYNEAHGITPKTIQKAVRDLISISE 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             D +  N   DA+  S+S K+  A ++ L KQMH AA  L+FE+AA +RD+I  LK 
Sbjct: 600 AADKSEDNFVKDAE--SMSYKELNAAIRKLTKQMHSAAAELDFEKAAMLRDKIMELKK 655


>gi|321313063|ref|YP_004205350.1| excinuclease ABC subunit B [Bacillus subtilis BSn5]
 gi|291486068|dbj|BAI87143.1| excinuclease ABC subunit B [Bacillus subtilis subsp. natto BEST195]
 gi|320019337|gb|ADV94323.1| excinuclease ABC subunit B [Bacillus subtilis BSn5]
          Length = 661

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/657 (54%), Positives = 477/657 (72%), Gaps = 2/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L+KGI   +K Q LLG TG+GKTFT++ +I+ + +P +V+A
Sbjct: 5   FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS E Y +M+V L+    +E+ ELL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLVDIQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ + + + + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ +L  + + G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PG  P TL +Y P+D ++ VDESHVTIPQ+ GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       + VSATPG +E+E     +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTDE-MVEQIIRPTGLLDPLID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILLE 739
           N   +VI+YAD ITKS+++AI+ET RRRE+Q   N++H I P+++ ++I +VI   +  E
Sbjct: 544 NAEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKEIRDVIRATVAAE 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D A        +   ++KK+ +  ++ +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 DKAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE 660


>gi|237745871|ref|ZP_04576351.1| excinuclease ABC subunit B [Oxalobacter formigenes HOxBLS]
 gi|229377222|gb|EEO27313.1| excinuclease ABC subunit B [Oxalobacter formigenes HOxBLS]
          Length = 699

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/669 (54%), Positives = 486/669 (72%), Gaps = 4/669 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + PSGDQP AI +L++GI      Q LLGVTGSGKT+TMA VI  + RPAIV
Sbjct: 22  SPFELHQPFPPSGDQPEAIDRLVEGIEDGLSYQTLLGVTGSGKTYTMANVIARLGRPAIV 81

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++M
Sbjct: 82  FAPNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQM 141

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R S T+SL+ER D ++V++VS IYGIG+   Y QMI+ L+  D + Q+++++ LV+ QY 
Sbjct: 142 RLSCTKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTRDKIPQRDVITRLVQMQYT 201

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RGTFRV GD+I++FP+   D A R+ MF ++IE +  F PLTG+ ++ +    
Sbjct: 202 RNDIDFSRGTFRVRGDTIDVFPAENADYALRIEMFDDEIESLHFFDPLTGKVLQKIPRFT 261

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYVTPR T+  A++ IKEEL+ R     + G+ +E QR++QR  +DLEM+   G 
Sbjct: 262 VYPGSHYVTPRETVLRAIETIKEELRERKEWFRQNGKFIEEQRIDQRTRFDLEMMHELGF 321

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
            + IENYSR+LTGR  G+ PPTL +Y+P D+L+F+DESHVTI Q++GMY GD  RK  L 
Sbjct: 322 TKGIENYSRHLTGRKAGDAPPTLVDYLPSDALMFLDESHVTIGQLNGMYNGDRSRKTNLV 381

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPLRF+E+      T+ VSATP ++EL    G +VEQ++RPTGLVDP 
Sbjct: 382 DYGFRLPSALDNRPLRFDEFESKMRQTVFVSATPANYELAHS-GQVVEQVVRPTGLVDPA 440

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R A TQV+D+  EI+   ++  R+L+T LTKRMAE LTE+L E  IRVRY+HS++ T
Sbjct: 441 IEVRPASTQVDDLLAEIHDRVEKSERVLVTTLTKRMAEQLTEFLSENGIRVRYLHSDIDT 500

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 501 VERVEIVRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 560

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N   ILYADT+T S++ AIDET RRR KQL +N++HNI P  + ++I ++ID +  
Sbjct: 561 ARNLNGSAILYADTMTDSMKRAIDETERRRAKQLAYNEQHNITPAGIMKEIRDLIDGVFH 620

Query: 739 EDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              +   + +    AQ   +S+K+    +K L KQM   A NL FE+AA+ RD++  L+ 
Sbjct: 621 PQDSLQELHVADEQAQYDVMSEKELSREIKKLEKQMMEHAKNLEFEKAAQTRDQLHLLRE 680

Query: 796 SPYFQGLDD 804
             +   + D
Sbjct: 681 KAFGAAVID 689


>gi|254786424|ref|YP_003073853.1| excinuclease ABC subunit B [Teredinibacter turnerae T7901]
 gi|237684197|gb|ACR11461.1| excinuclease ABC, B subunit [Teredinibacter turnerae T7901]
          Length = 671

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/669 (54%), Positives = 487/669 (72%), Gaps = 7/669 (1%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           +K    F++ + + P+GDQPAAI +L +G+ +    Q LLGVTGSGKTFT+A ++E +QR
Sbjct: 4   TKLAKPFKVNSKFKPAGDQPAAIEKLYQGVEAGLAHQTLLGVTGSGKTFTIANLVEKLQR 63

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P ++MA NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+I+K++S+NE 
Sbjct: 64  PTMIMAHNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIDKDASVNEH 123

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT++L+ER+D ++V++VS IYG+G  ++Y +M++ L  GD ++Q+ +L  L +
Sbjct: 124 IEQMRLSATKALMERDDALIVATVSAIYGLGDPDAYLKMMLHLSRGDQIDQRAILRRLAE 183

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R DI   RGT+RV G+ I++FP+  E  A R+ +F +++E+IS F PLTG+ +  +
Sbjct: 184 LQYTRNDIDFGRGTYRVRGEIIDVFPADSEIEAVRIELFDDEVEQISSFDPLTGEILARL 243

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               IY  SHYVTPR T+  A+ +I+EE++ RL +     +L+EAQRLEQR  YD+EM+ 
Sbjct: 244 PRCTIYPKSHYVTPRQTILNAVDFIEEEMQERLEQFRGMDKLVEAQRLEQRTKYDMEMMR 303

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR  G PPPTLF+Y+P++SLL +DESHVT+PQI GMY+GD  RK
Sbjct: 304 ELGYCNGIENYSRYLSGRAAGMPPPTLFDYLPKNSLLVIDESHVTVPQIGGMYKGDRSRK 363

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL EYGFRLPS +DNRP+RF+EW  L P  + VSATPG++E E  QG IVEQ++RPTGL
Sbjct: 364 ETLVEYGFRLPSALDNRPMRFDEWEQLAPQMVFVSATPGNYEAEH-QGQIVEQVVRPTGL 422

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           VDP +E+R A TQV+D   EI    +   R+L+TVLTKRMAEDLTE+L E  +RVRY+HS
Sbjct: 423 VDPEIEVRPAGTQVDDCLSEIRKRVKAKDRVLITVLTKRMAEDLTEFLMEHGVRVRYLHS 482

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAI DADKEGFLRS  SLIQT
Sbjct: 483 DIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSDRSLIQT 542

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARNV  + ILYAD IT S+Q A+DET RRREKQ+  N+ + I P+ + + I ++++
Sbjct: 543 IGRAARNVKGRAILYADNITGSMQRAMDETNRRREKQIAFNEANGITPKGIVKSIADIME 602

Query: 735 PILLEDAATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                 A   +    A++ +       + K    H+  L K M  AA NL FE+AA IRD
Sbjct: 603 GARAPGARPGSKRKVAEKAASYATDVPAGKDVWHHIADLEKDMLEAAKNLEFEKAAAIRD 662

Query: 789 EIKRLKSSP 797
           +I  LK   
Sbjct: 663 KIHELKEGA 671


>gi|145630876|ref|ZP_01786653.1| excinuclease ABC subunit B [Haemophilus influenzae R3021]
 gi|144983536|gb|EDJ91004.1| excinuclease ABC subunit B [Haemophilus influenzae R3021]
          Length = 679

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/674 (55%), Positives = 485/674 (71%), Gaps = 9/674 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA
Sbjct: 6   NTKPFILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPA 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI+
Sbjct: 66  MLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIE 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + Q
Sbjct: 126 QMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V  
Sbjct: 186 YTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPR 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   
Sbjct: 246 FTIYPKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNEL 305

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK T
Sbjct: 306 GYCSGIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKET 365

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+D
Sbjct: 366 LVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLD 425

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EIR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++
Sbjct: 426 PLIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDI 485

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 486 DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 545

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN+N K ILYAD+ITKS++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D  
Sbjct: 546 RAARNLNGKAILYADSITKSMEKAITETNRRREKQIKYNEEHGIVPQALNKKVGELLDIG 605

Query: 737 LLEDAATTNISIDAQ---------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
              +          +             + K+ +  +K L +QM+  A +L FE+AA IR
Sbjct: 606 QGANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIR 665

Query: 788 DEIKRLKSSPYFQG 801
           D++  L+    F  
Sbjct: 666 DQLHELREQFVFDN 679


>gi|145299263|ref|YP_001142104.1| excinuclease ABC subunit B [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852035|gb|ABO90356.1| uvrABC system subunit B [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 670

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/666 (54%), Positives = 480/666 (72%), Gaps = 6/666 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             FQ+ + + P+GDQP AIA+LL GI S    Q LLGVTGSGKTFTMA VI  + RP ++
Sbjct: 3   KLFQLASQFQPAGDQPEAIARLLDGIESGLAHQTLLGVTGSGKTFTMANVIATLNRPTMI 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++M
Sbjct: 63  MAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPTTDTFIEKDASINDHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  ++Y  M++ LK+GD + Q+++L  L + QY 
Sbjct: 123 RLSATKALLERRDVIIVASVSAIYGLGDPQAYLSMMLHLKVGDVINQRDILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RGTFRV G+ I+I+P+  + +A RV +F  ++E +S+F PLTG   + V    
Sbjct: 183 RNDMAFQRGTFRVRGEVIDIYPAESDKLALRVELFDEEVERLSQFDPLTGAIEQTVVRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HY TPR T+  A+++IKEELK R  +L    +L+E QR+ QR  +D+EM++  G 
Sbjct: 243 IYPKTHYATPRETILGAIEHIKEELKSRREQLLSLNKLVEEQRISQRTQFDMEMMQELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRAPGEPPPTLFDYLPGDGLLIIDESHVTVPQIGAMFKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+F+E+  L P T+ VSATPG +EL +    +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFDEFEALMPQTVFVSATPGPYELGKSGDDVVQQVVRPTGLLDPE 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI L      R+L+T LTKRM+EDLTEYL + ++RVRY+HS++ T
Sbjct: 423 IEVRPVTTQVDDLLSEIRLRVAVEERVLVTTLTKRMSEDLTEYLADHDVRVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N KVILY D+IT S+++AI+ET RRR  Q  HN +H I P+ + + + +V+D    
Sbjct: 543 ARNLNGKVILYGDSITNSMRVAIEETERRRTLQHAHNLEHGITPKGLNKSVGDVMDMGGS 602

Query: 739 EDAATT------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             A  T            +    S  +    +K + +QM   A +L FE+AA +RD+I++
Sbjct: 603 RSAGKTGRGGRKAAEPQGEYHVRSAGEIAKEIKRMEEQMFQHARDLEFEQAAALRDQIQQ 662

Query: 793 LKSSPY 798
           L+    
Sbjct: 663 LRHELI 668


>gi|192360924|ref|YP_001982886.1| excinuclease ABC subunit B [Cellvibrio japonicus Ueda107]
 gi|190687089|gb|ACE84767.1| excinuclease ABC, B subunit [Cellvibrio japonicus Ueda107]
          Length = 675

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/675 (56%), Positives = 497/675 (73%), Gaps = 10/675 (1%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
             S +   F + +++ P+GDQP+AIA L+ GI +    Q LLGVTGSGKTFT+A VI  +
Sbjct: 2   TKSFESKQFVVHSEFAPAGDQPSAIAGLVAGIEAGLAHQTLLGVTGSGKTFTIANVIARV 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP ++MA NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+SS+N
Sbjct: 62  QRPTLIMAHNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSVN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           E I++MR SAT++L+ER D I+V++VS IYG+G  +SY +M++ +  GD ++Q+++L  L
Sbjct: 122 EHIEQMRLSATKALMERKDAIIVATVSAIYGLGDPDSYMKMLLHIVRGDRIDQRQILRRL 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
            + QY R D+   R T+RV G+ I+I+P+  +  A RV +F +++E+IS F PLTG+ + 
Sbjct: 182 AELQYTRNDMDFSRATYRVRGEVIDIYPADSDMEAVRVELFDDEVEQISVFDPLTGEVLH 241

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V    IY  +HYVTPR T+  A+  IKEEL+ RL  L +  +L+EAQRLEQR  YDLEM
Sbjct: 242 KVPRYTIYPKTHYVTPRETVLEAIDNIKEELRERLAYLRENNKLVEAQRLEQRTRYDLEM 301

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           +   G C  IENYSR+L+GR  GEPPPTLF+Y+P D+LL +DESHVT+PQI  MY+GD  
Sbjct: 302 MHELGYCNGIENYSRFLSGRTSGEPPPTLFDYLPADALLVIDESHVTVPQIGAMYKGDRS 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL EYGFRLPS +DNRP+RF+EW  + P  I VSATPG +E E  QG +VEQ++RPT
Sbjct: 362 RKETLVEYGFRLPSALDNRPMRFDEWERIAPQMIFVSATPGKYEDEH-QGQVVEQVVRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +E+R A TQV+DV  EI L A++  R+L+T LTKRMAEDLTEYL E  +RVRY+
Sbjct: 421 GLVDPQIEVRPAGTQVDDVLSEIRLRAEKNERVLVTTLTKRMAEDLTEYLAEHGVRVRYL 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 481 HSDIDTVERVEIIRDLRLGQFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLI 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNVN K ILYAD +T S++ AIDET RRR+KQ++HN+K  I PQ ++++I ++
Sbjct: 541 QTIGRAARNVNGKAILYADNMTGSMKRAIDETERRRQKQIDHNRKQGITPQGIRKQIADI 600

Query: 733 IDPILLEDAATTNISIDAQ---------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
           ++   +  A   +    A          ++ ++ K     ++ L KQM  AA +L FE A
Sbjct: 601 LEGAQVPGAGGRSARNKAMAIAEKQGKYKVEVNPKDIWKTIELLEKQMFQAAKDLEFEVA 660

Query: 784 ARIRDEIKRLKSSPY 798
           A++RDEI++LK    
Sbjct: 661 AKLRDEIEKLKKQAV 675


>gi|260582944|ref|ZP_05850728.1| excinuclease ABC, B subunit [Haemophilus influenzae NT127]
 gi|260094044|gb|EEW77948.1| excinuclease ABC, B subunit [Haemophilus influenzae NT127]
          Length = 679

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/674 (55%), Positives = 486/674 (72%), Gaps = 9/674 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA
Sbjct: 6   NTKPFILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPA 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI+
Sbjct: 66  MLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIE 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + Q
Sbjct: 126 QMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V  
Sbjct: 186 YTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPR 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   
Sbjct: 246 FTIYPKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNEL 305

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK T
Sbjct: 306 GYCSGIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKET 365

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+D
Sbjct: 366 LVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLD 425

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EIR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++
Sbjct: 426 PLIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDI 485

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 486 DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 545

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN+N K ILYAD+ITKS++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D  
Sbjct: 546 RAARNLNGKAILYADSITKSMEKAITETNRRREKQIKYNEEHGIVPQALNKKVGELLDIG 605

Query: 737 LLEDAATTNISIDAQ---------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
              +          +             + K+ +  +K L +QM+  A +L FE+AA IR
Sbjct: 606 QGANQKAKANKQRGKMVAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIR 665

Query: 788 DEIKRLKSSPYFQG 801
           D++ +L+    F  
Sbjct: 666 DQLHQLREQFVFDN 679


>gi|16080570|ref|NP_391397.1| excinuclease ABC subunit B [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221311467|ref|ZP_03593314.1| excinuclease ABC subunit B [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315794|ref|ZP_03597599.1| excinuclease ABC subunit B [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320709|ref|ZP_03602003.1| excinuclease ABC subunit B [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324994|ref|ZP_03606288.1| excinuclease ABC subunit B [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|3123297|sp|P37954|UVRB_BACSU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B; AltName: Full=Protein
           dinA
 gi|99032024|pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
           Activity Of Uvrb
 gi|126031163|pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
           Of Uvrb Bound To Fluorescein-Adducted Dna
 gi|2618841|gb|AAC67270.1| excinuclease ABC subunit B [Bacillus subtilis]
 gi|2636043|emb|CAB15534.1| excinuclease ABC (subunit B) [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 661

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/657 (54%), Positives = 477/657 (72%), Gaps = 2/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L+KGI   +K Q LLG TG+GKTFT++ +I+ + +P +V+A
Sbjct: 5   FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS E Y +M+V L+    +E+ ELL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLVDIQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ + + + + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGDRDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ +L  + + G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PG  P TL +Y P+D ++ VDESHVTIPQ+ GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       + VSATPG +E+E     +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTDE-MVEQIIRPTGLLDPLID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILLE 739
           N   +VI+YAD ITKS+++AI+ET RRRE+Q   N++H I P+++ ++I +VI   +  E
Sbjct: 544 NAEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKEIRDVIRATVAAE 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D A        +   ++KK+ +  ++ +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 DKAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE 660


>gi|218290403|ref|ZP_03494533.1| excinuclease ABC, B subunit [Alicyclobacillus acidocaldarius LAA1]
 gi|218239531|gb|EED06725.1| excinuclease ABC, B subunit [Alicyclobacillus acidocaldarius LAA1]
          Length = 663

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/653 (55%), Positives = 475/653 (72%), Gaps = 1/653 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ TD  P GDQP AI  L+ G++S  + Q LLGVTGSGKTFTMA +I  + RP +V+A
Sbjct: 8   FELVTDMKPQGDQPQAIEALVDGVYSGLRHQTLLGVTGSGKTFTMANIIAEVNRPTLVIA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF+ FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK++ IN++ID++RH
Sbjct: 68  HNKTLAAQLAAEFRAFFPNNAVEYFVSYYDYYQPEAYIPSTDTYIEKDAKINDEIDKLRH 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT ++LERND +VV+SVS IYG+G+ E Y   ++ L++G ++++ ++L  LV  QY R 
Sbjct: 128 SATAAILERNDVLVVASVSAIYGLGNPEEYRHHVLSLRVGATMDRNQMLRKLVDMQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++ A RV  FG++I+ ISE   LTG+ +       ++
Sbjct: 188 DINFTRGTFRVRGDVVEIFPASRDENAIRVEFFGDEIDRISEINVLTGEVVARRSHFSVF 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT R  L  A++ I+ EL+ RL EL  +G+LLEAQRLEQR  YD+EM+   G C 
Sbjct: 248 PASHYVTSRERLERAIERIRAELEERLAELRAQGKLLEAQRLEQRTHYDIEMMLEMGFCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  GEPP TL +Y P   L F+DESHVTIPQ+ GMY GD  RK TL E+
Sbjct: 308 GIENYSRHLEGREAGEPPYTLLDYFPPGFLTFIDESHVTIPQLRGMYNGDRSRKLTLIEH 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+       I VSATPG +E +  Q  IVEQIIRPTGLVDP + 
Sbjct: 368 GFRLPSAADNRPLKFEEFERAVGQCIYVSATPGPYEQKH-QQRIVEQIIRPTGLVDPEIH 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  I+VRY+HS++KT+E
Sbjct: 427 VRPVKGQIDDLVGEIRERIRRDERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSDIKTIE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ I+RDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 487 RMVILRDLRRGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSHTSLIQTIGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTIT+S+++AI+ET RRR+KQ+ +N++H I PQ+V++ + +VI+   + +
Sbjct: 547 NANGTVIMYADTITESMRIAIEETERRRQKQIAYNREHGITPQTVRKAVRDVIESTKVAE 606

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +    +++  +   LS ++ K  +  L ++M  AA  L FE AA +RD I  L
Sbjct: 607 SEEDYVAVAEKAQKLSGRERKELIAKLEQEMKAAAKALEFERAAELRDMIMEL 659


>gi|315634006|ref|ZP_07889295.1| excision endonuclease subunit UvrB [Aggregatibacter segnis ATCC
           33393]
 gi|315477256|gb|EFU67999.1| excision endonuclease subunit UvrB [Aggregatibacter segnis ATCC
           33393]
          Length = 680

 Score =  855 bits (2209), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/674 (55%), Positives = 487/674 (72%), Gaps = 9/674 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + +D+ PSGDQP AIA+L + +      Q LLGVTGSGKTFT+A VI  + RPA
Sbjct: 6   NTKPFILHSDFKPSGDQPQAIAKLAENLEDGLAHQTLLGVTGSGKTFTIANVIAQLNRPA 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI+
Sbjct: 66  MLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIE 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  + Q+++L+ L + Q
Sbjct: 126 QMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIINQRQILAKLAELQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV G+ I+IFP+  ++ A R+ +F ++IE +S F PLTG     V  
Sbjct: 186 YTRNDQAFQRGTFRVRGEIIDIFPAESDERAVRIELFDDEIERLSLFDPLTGSSFGAVPR 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y  +HYVTPR  +  A++ IK EL  R     KE +LLE QR+ QR  +D+EM+   
Sbjct: 246 FTVYPKTHYVTPRERILDAIEKIKVELAQRREYFIKENKLLEEQRISQRTQFDIEMMNEL 305

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRYL+GR+ GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK T
Sbjct: 306 GYCSGIENYSRYLSGRDEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKET 365

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+D
Sbjct: 366 LVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGAEIIDQVVRPTGLLD 425

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EIR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++
Sbjct: 426 PQIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDI 485

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 486 DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 545

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN+N K ILYAD+ITKS++ AI ET RRREKQ ++N+ H I PQ++ +K+ E++D  
Sbjct: 546 RAARNLNGKAILYADSITKSMEKAITETNRRREKQTKYNEDHGIVPQALNKKVGELLDIG 605

Query: 737 LLEDAATTNISIDAQQLSL---------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
              +          + ++          S K+ +  +K L +QM+  A +L FE+AA +R
Sbjct: 606 QGANQKAKANKQRGKMVAEPTALYTVPTSPKEYQQQIKKLEQQMYKFAQDLEFEKAAAVR 665

Query: 788 DEIKRLKSSPYFQG 801
           D++++L+ S    G
Sbjct: 666 DQLQQLRESFMLSG 679


>gi|39998352|ref|NP_954303.1| excinuclease ABC subunit B [Geobacter sulfurreducens PCA]
 gi|81831945|sp|Q747K3|UVRB_GEOSL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|39985298|gb|AAR36653.1| excinuclease ABC, B subunit [Geobacter sulfurreducens PCA]
          Length = 664

 Score =  855 bits (2209), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/658 (55%), Positives = 475/658 (72%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +DY P GDQP AIA+L +GI   ++ Q+LLGVTGSGKTFTMA VI A+ RPA+
Sbjct: 1   MERFRLASDYEPRGDQPRAIAELSEGIVRGDRDQVLLGVTGSGKTFTMANVIAAVNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EF+  FP NAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++ID+
Sbjct: 61  VLAPNKTLAAQLYGEFRELFPDNAVEYFVSYYDYYQPEAYIPTTDTFIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+ATRSLL R D I+V+SVSCIYGIGS   Y  M +    GD   + ELL  LV  QY
Sbjct: 121 LRHAATRSLLTRRDVIIVASVSCIYGIGSPAEYQAMHIFFHQGDEYGRDELLRKLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RGTFRV GD +EIFP+H  + A+R+  FG+ ++ ISE  PL G  ++ +   
Sbjct: 181 ERNDLDFHRGTFRVRGDIVEIFPAHEGERAYRIEFFGDTVDAISEIDPLRGVVVQRLTKC 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  SHYV  R TL+ AM+ I+ +L+ RL    +   L+EAQRLEQR  +DLEM+E  G
Sbjct: 241 AVYPASHYVATRETLDRAMEEIRTDLRERLQWFRERNMLVEAQRLEQRTMFDLEMMEEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSRY  GR PGEPP TL +Y P D +LFVDESH+T+ Q+ GMYRGD  RK TL
Sbjct: 301 FCQGIENYSRYFDGRTPGEPPYTLLDYFPRDFILFVDESHITVSQVGGMYRGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLP+ +DNRPL F E+      ++ VSATP  +EL+Q  G++VEQ+IRPTGL+DP
Sbjct: 361 VNYGFRLPAALDNRPLTFGEFTERLNQSVYVSATPADYELQQSGGVVVEQVIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R A  QV+D+  E+     +G R+L+T LTKRMAEDLT+Y  +  +RVRY+HS++ 
Sbjct: 421 VIEVRPATEQVDDLLHEVRETTARGERVLVTTLTKRMAEDLTDYYRDLGVRVRYLHSDID 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T++R++IIRDLR+G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT GR
Sbjct: 481 TIQRMQIIRDLRMGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSARSLIQTCGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN +VI+YADT+T S+Q  +DET RRR  Q   N +H I PQ+VK+ +  +++ I 
Sbjct: 541 AARNVNGRVIMYADTVTGSMQSCLDETARRRALQEAFNTEHGITPQTVKKGLRTILESIE 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             D  T     + ++  +S  +    +K LRK+M  AA  L FE AA +RD+IK+L+ 
Sbjct: 601 ERDYYTVAAVAETREEYISADEIPKRVKKLRKEMLDAAKKLEFERAADLRDQIKKLEE 658


>gi|197302521|ref|ZP_03167576.1| hypothetical protein RUMLAC_01249 [Ruminococcus lactaris ATCC
           29176]
 gi|197298419|gb|EDY32964.1| hypothetical protein RUMLAC_01249 [Ruminococcus lactaris ATCC
           29176]
          Length = 692

 Score =  855 bits (2209), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/682 (52%), Positives = 486/682 (71%), Gaps = 5/682 (0%)

Query: 116 LLKNGKIWTPHRSWSIN--NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLL 173
             + G   +   S  +   + S+    F+++  Y P+GDQP AIA+L+KG     + Q L
Sbjct: 7   NAEKGHSQSADNSQLLAHKSSSQGGHAFKLKAPYKPTGDQPQAIAELVKGFKEGNQCQTL 66

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           LGVTGSGKTFTMA VI+ +Q+P +V+A NK LAAQLY EFK  FP NAVEYFVSYYDYYQ
Sbjct: 67  LGVTGSGKTFTMANVIQQLQKPTLVIAHNKTLAAQLYGEFKEMFPDNAVEYFVSYYDYYQ 126

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
           PEAYVP +DTYI K+S+IN++ID++R SAT +L+ER D I+V+SVSCIYG+G+   Y  M
Sbjct: 127 PEAYVPSSDTYIAKDSAINDEIDKLRLSATMALMERRDVIIVASVSCIYGLGNPVDYQNM 186

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
           ++ L+ G   ++ E+++ L++ QY R D+   RGTFRV GD +EI P++  D A RV  F
Sbjct: 187 VISLRPGMIKDRDEVMAKLIEIQYDRNDMDFHRGTFRVRGDVLEIIPAYESDTAIRVEFF 246

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
           G++I+ ISE   LTG+    ++ I I+  SHYV  R  +  A+  I+EEL+ R+ E ++ 
Sbjct: 247 GDEIDRISEIDILTGEVKDELKHIAIFPASHYVVDRENIKRAVADIEEELEERVKEFKRN 306

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
            +LLEAQR+ +R  +D+EML+ TG C  IENYSR+L+G  PG+ P TL +Y P+D ++ +
Sbjct: 307 DKLLEAQRIAERTNFDIEMLKETGFCSGIENYSRHLSGLKPGQAPYTLIDYFPDDFIMMI 366

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
           DESH T+PQI GMY GD  RK TL +YGFRLPS  DNRPL FEE+       + VSATPG
Sbjct: 367 DESHKTVPQIGGMYHGDQSRKQTLVDYGFRLPSAKDNRPLNFEEFESKINQVLFVSATPG 426

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E++  + +  EQ+IRPTGL+DP VE+R    Q++D+  EIN   ++  ++L+T LTK+
Sbjct: 427 QYEMDH-ELLRAEQVIRPTGLLDPEVEVRPVEGQIDDLLGEINKEIEKKNKVLVTTLTKK 485

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAEDLT+Y+ E  IRV+Y+HS++ TLER EIIRD+RL  FDVLVGINLLREGLDIPE  L
Sbjct: 486 MAEDLTDYMREVGIRVKYLHSDIDTLERTEIIRDMRLDVFDVLVGINLLREGLDIPEITL 545

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           VAILDADKEGFLRS+TSLIQTIGRAARN    VI+YADT+T+S+QLAIDET RRRE Q++
Sbjct: 546 VAILDADKEGFLRSETSLIQTIGRAARNSEGHVIMYADTMTESMQLAIDETQRRREIQMQ 605

Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
           +NK+H I P+++++ + ++I   + +  A   + ++    S+S+K+ +  ++ L KQM  
Sbjct: 606 YNKEHGITPKTIQKSVRDLI--SISKKVAAQELKMEKDPESMSRKELEKLVRDLEKQMKK 663

Query: 774 AADNLNFEEAARIRDEIKRLKS 795
           AA  LNFE AA +RD++  LK 
Sbjct: 664 AAAELNFEVAAELRDKLIDLKK 685


>gi|238794062|ref|ZP_04637679.1| UvrABC system protein B [Yersinia intermedia ATCC 29909]
 gi|238726567|gb|EEQ18104.1| UvrABC system protein B [Yersinia intermedia ATCC 29909]
          Length = 680

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/674 (54%), Positives = 469/674 (69%), Gaps = 5/674 (0%)

Query: 130 SINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI 189
           S          F++ +++ P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI
Sbjct: 4   SPAGSKFMSKLFKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTIANVI 63

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
             + RP +V+APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++
Sbjct: 64  ADLNRPTMVLAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDA 123

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELL 309
           S+NE I++MR SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L
Sbjct: 124 SVNEHIEQMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSIL 183

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369
             L + QY R D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ
Sbjct: 184 RRLSELQYSRNDQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQ 243

Query: 370 KIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD 429
               V    +Y  +HYVTPR  +  AM+ IK EL  R   L    +LLE QR+ QR  +D
Sbjct: 244 LQHEVPRFTVYPKTHYVTPRERILQAMEEIKVELADRRQVLLANNKLLEEQRISQRTQFD 303

Query: 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG 489
           LEM+   G C  IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+G
Sbjct: 304 LEMMNELGYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYKG 363

Query: 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
           D  RK TL EYGFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+  G I++Q++
Sbjct: 364 DRSRKETLVEYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIDQVV 423

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           RPTGL+DP +E+R   TQV+D+  EI + A    R+L+T LTKRMAEDLTEYL E   RV
Sbjct: 424 RPTGLLDPLIEVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLGEHGARV 483

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           RY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ 
Sbjct: 484 RYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 543

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           SLIQTIGRAARN+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +KI
Sbjct: 544 SLIQTIGRAARNLNGKAILYGDRITASMEKAIGETERRRVKQQTYNEERGIIPQGLNKKI 603

Query: 730 MEVID-----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
            +++                 ++      +L  K     ++ L  +M+  A NL FE+AA
Sbjct: 604 GDILQLGQPSSRGKGKGRGGKVADPNNYHALPPKALDQKIRELESKMYTHAQNLEFEQAA 663

Query: 785 RIRDEIKRLKSSPY 798
            +RD++ +L+    
Sbjct: 664 ELRDQVHQLRQQFI 677


>gi|163743673|ref|ZP_02151048.1| excinuclease ABC subunit B [Phaeobacter gallaeciensis 2.10]
 gi|161383040|gb|EDQ07434.1| excinuclease ABC subunit B [Phaeobacter gallaeciensis 2.10]
          Length = 732

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/678 (62%), Positives = 528/678 (77%), Gaps = 2/678 (0%)

Query: 118 KNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVT 177
           K+  +                  F M T++ P+GDQP AI +L +G+   E+ Q+LLG T
Sbjct: 8   KSMPMMADRAPQHRPKLEGG-REFVMHTEFDPAGDQPTAIKELSEGVLEGERNQVLLGAT 66

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G+GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP N+VEYFVS+YDYYQPEAY
Sbjct: 67  GTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPENSVEYFVSFYDYYQPEAY 126

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
           V R+DTYIEKES INEQIDRMRHSATRSLLER+D I+++SVSCIYGIGSVE+YS M   L
Sbjct: 127 VARSDTYIEKESQINEQIDRMRHSATRSLLERDDVIIIASVSCIYGIGSVETYSAMTQDL 186

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           K+GD  +Q+++++ LV QQYKR D    RG+FRV GDS+EIFP+HLED AWR+S FG ++
Sbjct: 187 KVGDDYDQRQVMADLVAQQYKRNDQAFQRGSFRVRGDSLEIFPAHLEDRAWRLSFFGEEL 246

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           E I+EF PLTG+K    + I++YANSHYVTP+PTL  A+  IKEELKMRL +L  EG+LL
Sbjct: 247 EGITEFDPLTGEKTGTFDQIRVYANSHYVTPKPTLKQAVISIKEELKMRLDQLVGEGKLL 306

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESH 477
           EAQRLEQR  +D+EMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESH
Sbjct: 307 EAQRLEQRTNFDIEMLEATGHCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESH 366

Query: 478 VTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537
           V++PQI GMY+GD  RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WEL
Sbjct: 367 VSVPQIGGMYKGDHRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPSKWEL 426

Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           EQ  G+  EQ+IRPTGL+DP VEIR    QV+D+ DE+      G R L+T LTKRMAED
Sbjct: 427 EQSSGVFAEQVIRPTGLLDPQVEIRPVDMQVDDLLDEVRRVTADGFRTLVTTLTKRMAED 486

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTEY++E+ I+VRYMHS++ TLERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAIL
Sbjct: 487 LTEYMHEQGIKVRYMHSDIDTLERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAIL 546

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           DADKEGFLRS+TSLIQTIGRAARN   +VI+YAD IT S++ A+ ET RRREKQ+ +N++
Sbjct: 547 DADKEGFLRSETSLIQTIGRAARNAEGRVIMYADRITGSMERALGETNRRREKQIAYNEE 606

Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
           H I P +VK+ + +V+  +   D     ++    +  +     +AHL  LR+QM  AA+N
Sbjct: 607 HGITPATVKKNVEDVLAGLYAGDVDMNRVTATIDK-PMHGANLEAHLAGLREQMRKAAEN 665

Query: 778 LNFEEAARIRDEIKRLKS 795
           L FEEAAR+RDE+KRL++
Sbjct: 666 LEFEEAARLRDEVKRLEA 683


>gi|257464648|ref|ZP_05629019.1| excinuclease ABC subunit B [Actinobacillus minor 202]
 gi|257450308|gb|EEV24351.1| excinuclease ABC subunit B [Actinobacillus minor 202]
          Length = 672

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/669 (56%), Positives = 489/669 (73%), Gaps = 6/669 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K    F + + + PSGDQP AIA+L++G++     Q LLGVTGSGKTFT+A VI  + RP
Sbjct: 3   KQGKPFILHSPFKPSGDQPTAIAKLVEGLNDGLAHQTLLGVTGSGKTFTIANVIATLNRP 62

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
           A+V+APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI
Sbjct: 63  AMVLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQI 122

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           ++MR SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G+ ++Q+++LS L + 
Sbjct: 123 EQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGEMIDQRKILSRLAEL 182

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D    R TFRV G+ I+IFP+  +DVA RV +F ++IE +S F PLTG  +  V 
Sbjct: 183 QYTRNDQAFQRATFRVRGEVIDIFPAESDDVALRVELFDDEIENLSLFDPLTGHSLGRVP 242

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              IY  +HYVTPR  +  A++ IKEEL  R     KE +LLE QR+ QR  +D+EM+  
Sbjct: 243 RYTIYPKTHYVTPRERILEAIEQIKEELAERRTYFIKENKLLEEQRIAQRTQFDIEMMNE 302

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GM+RGD  RK 
Sbjct: 303 LGYCSGIENYSRYLSGRKEGEPPPTLFDYMPSDGLLIIDESHVTVPQIGGMFRGDRARKE 362

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL +YGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    +++Q++RPTGL+
Sbjct: 363 TLVQYGFRLPSALDNRPLRFEEFERLSPQTIYVSATPGPYELEK-NPDVIDQVVRPTGLL 421

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +E+R   TQV+D+  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS+
Sbjct: 422 DPIIEVRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHSD 481

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + T+ER+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTI
Sbjct: 482 IDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 541

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D 
Sbjct: 542 GRAARNLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIVPQALNKKVGELLDI 601

Query: 736 ILLEDAATTNISIDAQQ-----LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
              +    +  S  +       +  S+K+ +  LK L +QM   A +L FE+AA +RD+I
Sbjct: 602 GQTDKPKRSKKSAKSTDNQTAYIPKSRKELEKELKVLEQQMRDFAKDLEFEKAAAVRDKI 661

Query: 791 KRLKSSPYF 799
            +LK+    
Sbjct: 662 HQLKAYLLL 670


>gi|329890749|ref|ZP_08269092.1| excinuclease ABC, B subunit [Brevundimonas diminuta ATCC 11568]
 gi|328846050|gb|EGF95614.1| excinuclease ABC, B subunit [Brevundimonas diminuta ATCC 11568]
          Length = 771

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/682 (63%), Positives = 528/682 (77%), Gaps = 8/682 (1%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTG 178
               W PHR     N  +    F+++T Y P+GDQP+AIA+L+      ++ Q+LLGVTG
Sbjct: 50  APADWVPHRPDRPTNKKR--VPFRLETKYQPAGDQPSAIAELVAQAAEGDREQVLLGVTG 107

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           SGKTFTMAKVIE  QRPA+++A NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV
Sbjct: 108 SGKTFTMAKVIEQTQRPALILAHNKTLAAQLYSEFKAFFPDNAVEYFVSYYDYYQPEAYV 167

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLK 298
           PRTDTYIEK+SSINEQIDRMRH+ATR++LER+D IVV+SVSCIYGIGSVE+Y+ M   LK
Sbjct: 168 PRTDTYIEKDSSINEQIDRMRHAATRAILERDDVIVVASVSCIYGIGSVETYTAMTFNLK 227

Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358
           +GD +++ +L + L+  QYKR D+   RG FR  GD++EIFP HLED AWR+S+FG++IE
Sbjct: 228 VGDQIDEAKLRADLIALQYKRNDLHFERGMFRKRGDTLEIFPVHLEDRAWRISLFGDEIE 287

Query: 359 EISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE 418
            I EF PLTG+K   ++ + +YA SHYVTPRPTLN A+  IK ELK  L  + + G+LLE
Sbjct: 288 AIDEFDPLTGKKTNALDEVTVYAASHYVTPRPTLNQAVNGIKAELKETLDWMVENGKLLE 347

Query: 419 AQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHV 478
           AQRLEQR  +DLEM+E TGSC  IENYSR+LTGR PGEPPPT FEYIP+++LLFVDESHV
Sbjct: 348 AQRLEQRTRFDLEMMEATGSCAGIENYSRWLTGRAPGEPPPTFFEYIPDNALLFVDESHV 407

Query: 479 TIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
           T+ QI  M+RGD+ RK+TLAEYGFRLPS +DNRPL+FEEW+ +RP T+ VSATPG+WEL+
Sbjct: 408 TVGQIGAMFRGDYRRKSTLAEYGFRLPSAIDNRPLKFEEWDAMRPQTVFVSATPGAWELD 467

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSA----RTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           +  G+  EQ+IRPTGL+DPPVEIR      R QV+DV DE+   A+ G R L+T LTK+M
Sbjct: 468 KTGGVFTEQVIRPTGLIDPPVEIRPVSGATRNQVDDVIDEVKATARAGYRSLVTTLTKKM 527

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AEDLTEY++E+ +RVRYMHS+V TLERIEI+RDLRLG FDVL+GINLLREGLDIPECGLV
Sbjct: 528 AEDLTEYMHEQGVRVRYMHSDVDTLERIEILRDLRLGSFDVLIGINLLREGLDIPECGLV 587

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
           AILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD +T S++ AI ET RRREKQ  +
Sbjct: 588 AILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRMTGSMERAIAETDRRREKQQAY 647

Query: 715 NKKHNINPQSVKEKIMEVIDPILLEDAAT--TNISIDAQQLSLSKKKGKAHLKSLRKQMH 772
           N +H I P++VK  I E+++           T   +  +         +A LK L  +M 
Sbjct: 648 NLEHGITPETVKRDIKEILESPYESRDLDRLTRPGVAEEAKPFVGSNFQAALKDLEGRMR 707

Query: 773 LAADNLNFEEAARIRDEIKRLK 794
            AA NL FEEAAR+RDEIK++K
Sbjct: 708 DAAANLEFEEAARLRDEIKKMK 729


>gi|332288675|ref|YP_004419527.1| excinuclease ABC subunit B [Gallibacterium anatis UMN179]
 gi|330431571|gb|AEC16630.1| excinuclease ABC subunit B [Gallibacterium anatis UMN179]
          Length = 677

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/675 (55%), Positives = 482/675 (71%), Gaps = 7/675 (1%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K+   F + +D+ PSGDQP AIA+L++ ++     Q LLGVTGSGKTFT+A VI  + RP
Sbjct: 3   KNNKPFILHSDFKPSGDQPTAIAKLVENLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRP 62

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
           A++ APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI
Sbjct: 63  AMIFAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINDQI 122

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           ++MR SAT+S LER D IVV+SVS IYG+G  +SY +M++ L+ G  ++Q+E+LS L   
Sbjct: 123 EQMRLSATKSFLERRDTIVVTSVSAIYGLGDPDSYLKMMLHLQTGAIIDQREILSHLAAL 182

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D    RGTFRV G+ I+IFP+  +DVA RV +F  +IE +S F PLT +    V 
Sbjct: 183 QYTRNDHAFQRGTFRVHGEVIDIFPAESDDVALRVELFDEEIERLSLFDPLTNRSFGAVP 242

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              +Y  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+  
Sbjct: 243 RYTVYPKTHYVTPRERILEAIEQIKQELVQRREYFIKENKLLEEQRITQRTQFDIEMMNE 302

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSRYL+GR  GEPPPTLF+YIP D LL +DESHVT+PQI GMYRGD  RK 
Sbjct: 303 LGYCSGIENYSRYLSGRKEGEPPPTLFDYIPNDGLLIIDESHVTVPQIGGMYRGDRSRKE 362

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+
Sbjct: 363 TLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGDEIIDQVVRPTGLL 422

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +E+R   TQV+D+  EI L  ++  R+L+T LTK+MAEDLT+YL E  + VRY+HS+
Sbjct: 423 DPEIEVRPVSTQVDDLLSEIRLRVEKNERVLVTTLTKKMAEDLTDYLAEHGVLVRYLHSD 482

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + T+ER+EIIRDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTI
Sbjct: 483 IDTVERVEIIRDLRAGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 542

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN+N K ILYAD IT S+Q AIDET RRR+KQ  +N++H I P+++ +KI E++D 
Sbjct: 543 GRAARNLNGKAILYADRITPSMQKAIDETERRRQKQQAYNEQHGIVPKALNKKIGEILDI 602

Query: 736 ILLEDAATTNISIDAQQLSLS-------KKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
               +       +       +        K  +  +K L +QM+  A +L FE+AA+ RD
Sbjct: 603 GQSANQKAKKQRLPKAAEPAATYEMLDNAKDLQKQIKHLEQQMYKFAQDLEFEKAAQARD 662

Query: 789 EIKRLKSSPYFQGLD 803
           ++  L+        D
Sbjct: 663 QLHALRDRFMKLQGD 677


>gi|291614226|ref|YP_003524383.1| excinuclease ABC, B subunit [Sideroxydans lithotrophicus ES-1]
 gi|291584338|gb|ADE11996.1| excinuclease ABC, B subunit [Sideroxydans lithotrophicus ES-1]
          Length = 674

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/664 (56%), Positives = 486/664 (73%), Gaps = 4/664 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + + +   + PSGDQP AIAQL++GI      Q LLGVTGSGKTFTMA VI    RPAI+
Sbjct: 9   SPYLLHLPFEPSGDQPTAIAQLVEGIEDGLAYQTLLGVTGSGKTFTMANVIARTGRPAIL 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLYSE ++FFP NAVEYFVSYYDYYQPEAYVP  D YIEK+SSINEQI++M
Sbjct: 69  MAPNKTLAAQLYSEMRDFFPENAVEYFVSYYDYYQPEAYVPSRDVYIEKDSSINEQIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+S+LER DC++V++VS IYGIG    Y  MI+ L+  + + Q++++  LV  QY+
Sbjct: 129 RLSATKSMLERQDCVIVATVSAIYGIGDPVDYHGMILHLREHEKMAQRDVIQRLVAMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RG FRV GD I+IFP+   + A RV++F +++E +S F PLTG     V    
Sbjct: 189 RNDIDFNRGHFRVRGDVIDIFPAESSENALRVTLFDDEVESLSLFDPLTGHIQTRVPRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +SHYVTPR T   A++ IK EL  R+    KE +L+EAQR+EQR  +DLEML   G 
Sbjct: 249 VYPSSHYVTPRETTLHAIETIKVELAERIAFFVKENKLVEAQRIEQRTRHDLEMLAEIGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
            + IENYSR+L+GR P E PPTL +Y+P ++L+ +DESHVTIPQI GMY+GD  RK  L 
Sbjct: 309 TKGIENYSRHLSGRGPNEAPPTLMDYLPPNALMIIDESHVTIPQIGGMYKGDRARKENLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            YGFRLPS +DNRPLRF+E+  +   TI VSATP ++E E   G +VEQ++RPTGL+DP 
Sbjct: 369 NYGFRLPSALDNRPLRFDEFEKIMRQTIFVSATPSTYEAEHT-GQVVEQVVRPTGLIDPT 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +++R A  QV+D+  E+ L    G R+L+T LTKRMAEDLTEY  E  I+VRY+HS+++T
Sbjct: 428 IDVRPATNQVDDLMSEVTLRTNVGERVLVTTLTKRMAEDLTEYFSEHGIKVRYLHSDIET 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGMFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           AR+++   ILYAD IT S++ AIDET RRR KQ+ +N+ H I PQSV ++I ++ID    
Sbjct: 548 ARHLHGTAILYADRITDSMRKAIDETDRRRAKQVAYNEAHGITPQSVVKRIKDIIDTEYD 607

Query: 739 EDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            DA   ++ +   +A+ L++S+K+    +  L K+M  AA NL FE+AA++RD++K+L+ 
Sbjct: 608 MDAERKSLKLAQTEAKYLAMSEKEVSREIAKLEKEMLQAAKNLEFEKAAQLRDQLKKLRE 667

Query: 796 SPYF 799
           S + 
Sbjct: 668 SVFL 671


>gi|24112147|ref|NP_706657.1| excinuclease ABC subunit B [Shigella flexneri 2a str. 301]
 gi|30062264|ref|NP_836435.1| excinuclease ABC subunit B [Shigella flexneri 2a str. 2457T]
 gi|110804780|ref|YP_688300.1| excinuclease ABC subunit B [Shigella flexneri 5 str. 8401]
 gi|81839440|sp|Q83S42|UVRB_SHIFL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|122957558|sp|Q0T6I1|UVRB_SHIF8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|24050984|gb|AAN42364.1| excision nuclease subunit B [Shigella flexneri 2a str. 301]
 gi|30040509|gb|AAP16241.1| excision nuclease subunit B [Shigella flexneri 2a str. 2457T]
 gi|110614328|gb|ABF02995.1| excision nuclease subunit B [Shigella flexneri 5 str. 8401]
 gi|281600105|gb|ADA73089.1| UvrABC system protein B [Shigella flexneri 2002017]
 gi|313650323|gb|EFS14735.1| excinuclease ABC, B subunit [Shigella flexneri 2a str. 2457T]
 gi|332760521|gb|EGJ90810.1| excinuclease ABC, B subunit [Shigella flexneri 2747-71]
 gi|332763269|gb|EGJ93511.1| excinuclease ABC, B subunit [Shigella flexneri K-671]
 gi|332767941|gb|EGJ98127.1| excinuclease ABC, B subunit [Shigella flexneri 2930-71]
 gi|333021199|gb|EGK40455.1| excinuclease ABC, B subunit [Shigella flexneri K-304]
          Length = 673

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/665 (55%), Positives = 477/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D IVV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM++  G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMDELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV------ 732
           ARNVN K ILY D  T S+  AI ET RRREKQ ++N++H I PQ + +K++++      
Sbjct: 543 ARNVNGKAILYGDRSTPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 733 IDPILLEDAATTNISIDAQQLSLS--KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           I     +    +   ++   + +    K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMLPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|262274535|ref|ZP_06052346.1| excinuclease ABC subunit B [Grimontia hollisae CIP 101886]
 gi|262221098|gb|EEY72412.1| excinuclease ABC subunit B [Grimontia hollisae CIP 101886]
          Length = 674

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/664 (56%), Positives = 481/664 (72%), Gaps = 9/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + + PSGDQP AI QLL+G+ +    Q LLGVTGSGKT+TMA VI    RP +++A
Sbjct: 5   FQLHSPFKPSGDQPTAINQLLEGLDAGLAHQTLLGVTGSGKTYTMANVIAKAGRPTMILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E + FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE +++MR 
Sbjct: 65  PNKTLAAQLYGEMRAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHVEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++V+SVS IYG+G  +SY +M++ L+ GD +EQ+ +L  L + QY R 
Sbjct: 125 SATKALMERRDVVIVASVSAIYGLGDPDSYLKMMLHLRRGDMIEQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D    RGTFRV G+ I+IFP+  +  A R+ +F +++E IS F PLTG    RN+    I
Sbjct: 185 DQAFTRGTFRVRGEVIDIFPAESDRDAIRIELFDDEVECISVFDPLTGAISERNLPRCTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IKEEL  R   L +  +LLE QR+ QR  +DLEM++  G C
Sbjct: 245 YPKTHYVTPREKILDAIEKIKEELADRKRVLLENNKLLEEQRISQRTMFDLEMMQELGYC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGREEGEPPPTLFDYLPADGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+F+E+  L P TI VSATPG +ELE+  G + EQ++RPTGL+DP V
Sbjct: 365 YGFRLPSALDNRPLKFDEFEALAPQTIYVSATPGKYELEKSGGEVAEQVVRPTGLLDPEV 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI +  Q   R+L+T LTKRMAEDLTEYL E ++RVRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRTQLNERVLVTTLTKRMAEDLTEYLEEHDVRVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K ILY DTIT S+Q AI+ET RRR KQ  HN+KH I PQ + +K+ +V++     
Sbjct: 545 RNLAGKAILYGDTITGSMQRAIEETERRRAKQQAHNEKHGIVPQKLSKKVADVLELGGKR 604

Query: 740 DAATTNISI--------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            +    +          DA  +  S ++ +A ++ L  QM+ AA NL FE AA +RDEI 
Sbjct: 605 RSHKPKVPASLKAVAEDDAAYVVRSPQQIEAQIQKLEAQMYEAAQNLEFETAAGLRDEIA 664

Query: 792 RLKS 795
            L++
Sbjct: 665 ALRA 668


>gi|68250221|ref|YP_249333.1| excinuclease ABC subunit B [Haemophilus influenzae 86-028NP]
 gi|81335357|sp|Q4QJX4|UVRB_HAEI8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|68058420|gb|AAX88673.1| UvrABC system protein B [Haemophilus influenzae 86-028NP]
          Length = 679

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/674 (55%), Positives = 486/674 (72%), Gaps = 9/674 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA
Sbjct: 6   NTKPFILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPA 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI+
Sbjct: 66  MLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIE 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + Q
Sbjct: 126 QMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V  
Sbjct: 186 YTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPR 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   
Sbjct: 246 FTIYPKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNEL 305

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK T
Sbjct: 306 GYCSGIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKET 365

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+D
Sbjct: 366 LVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGTEIIDQVVRPTGLLD 425

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EIR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++
Sbjct: 426 PLIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDI 485

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 486 DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 545

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN+N K ILYAD+ITKS++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D  
Sbjct: 546 RAARNLNGKAILYADSITKSMEKAITETNRRREKQIKYNEEHGIVPQALNKKVGELLDIG 605

Query: 737 LLEDAATTNISIDAQ---------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
              +          +             + K+ +  +K L +QM+  A +L FE+AA IR
Sbjct: 606 QGANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIR 665

Query: 788 DEIKRLKSSPYFQG 801
           D++ +L+    F  
Sbjct: 666 DQLHQLREQFVFDN 679


>gi|113461753|ref|YP_719822.1| excinuclease ABC subunit B [Haemophilus somnus 129PT]
 gi|112823796|gb|ABI25885.1| Excinuclease ABC subunit B [Haemophilus somnus 129PT]
          Length = 677

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/667 (57%), Positives = 485/667 (72%), Gaps = 8/667 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + +D+ PSGDQP AIA L++ ++     Q LLGVTGSGKTFT+A VI  + RPA+V
Sbjct: 7   KPFILHSDFQPSGDQPQAIANLVENLNDGLAHQTLLGVTGSGKTFTIANVIAKLNRPAMV 66

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++M
Sbjct: 67  LAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQM 126

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+S LER D IVV+SVS IYG+G  +SY +M++ L+ G  V+Q+++L+ L + QY 
Sbjct: 127 RLSATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQHGAIVDQRQILAKLAELQYT 186

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     +    
Sbjct: 187 RNDQVFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGANFGAIPRYT 246

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  A++ IK EL+ R   L    RL+E QRL QR  +D+EM+   G 
Sbjct: 247 IYPKTHYVTPRERILEAIEKIKLELQARREYLLANNRLVEEQRLTQRTQFDIEMMNELGY 306

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR+ GEPPPTLF+YIP D LL +DESHVT+PQI GMYRGD  RK TL 
Sbjct: 307 CSGIENYSRYLSGRDEGEPPPTLFDYIPSDGLLIIDESHVTVPQIGGMYRGDRSRKETLV 366

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+DP 
Sbjct: 367 EYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGDEIIDQVVRPTGLLDPE 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VEIR    QV+D+  E    A+Q  R+L+T LTKRMAEDLT+YL E  IRVRY+HS++ T
Sbjct: 427 VEIRPVAIQVDDLLSEARKRAEQNERVLVTTLTKRMAEDLTDYLEEHGIRVRYLHSDIDT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 487 VERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN+N K ILYAD+ITKS+Q AIDET RRREKQ+++N +  I PQ++ +K+ E++D    
Sbjct: 547 ARNLNGKAILYADSITKSMQKAIDETHRRREKQMKYNAEKGIVPQALNKKVGELLDIGQG 606

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                     A T   S    Q   S K  +  +K L +QM+  A +L FE+AA IRD++
Sbjct: 607 AITKSKTKARAKTVAESSALYQKINSPKDYQQQVKKLEQQMYKFAQDLEFEKAAAIRDQL 666

Query: 791 KRLKSSP 797
           + LK   
Sbjct: 667 QELKERF 673


>gi|73540754|ref|YP_295274.1| excinuclease ABC subunit B [Ralstonia eutropha JMP134]
 gi|90111049|sp|Q473K3|UVRB_RALEJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|72118167|gb|AAZ60430.1| Excinuclease ABC subunit B [Ralstonia eutropha JMP134]
          Length = 695

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/670 (55%), Positives = 485/670 (72%), Gaps = 4/670 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+   + P+GDQP AI QL++GI      Q LLGVTGSGKT+TMA VI  M RPAIV
Sbjct: 22  SPFQLYQPFPPAGDQPEAIRQLVEGIEDGLSFQTLLGVTGSGKTYTMANVIARMGRPAIV 81

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I++M
Sbjct: 82  FAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQM 141

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+SLLER D I+V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  QY 
Sbjct: 142 RLSATKSLLERRDTIIVATVSAIYGIGNPNEYHQMILTLRTGDKISQRDVIARLIAMQYT 201

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +    RGTFRV GD+I+IFP+   ++A R+ MF +++E +  F PLTG+  + +    
Sbjct: 202 RNETDFQRGTFRVRGDTIDIFPAEHAEMAVRLEMFDDEVESLQFFDPLTGRVRQKIPRFT 261

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +SHYVTPR T+  A++ IK EL+ RL    KE RL+E QRLEQR  +DLEML   G 
Sbjct: 262 VYPSSHYVTPRETVLRAIEDIKAELRDRLEFFHKENRLVEVQRLEQRTRFDLEMLSELGF 321

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHV I Q++GMY GD  RK TL 
Sbjct: 322 CKGIENYSRHLSGAKPGEPPPTLVDYLPSDALMFLDESHVLIGQLNGMYNGDRARKTTLV 381

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+       + VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 382 EYGFRLPSALDNRPLKFEEFERKMRQVMFVSATPAQFEKEHA-GQVVEQVVRPTGLVDPI 440

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R A TQV+D+  EINL  + G R+L+T LTKRMAE LTE+L E  ++VRY+HS++ T
Sbjct: 441 IIVRPATTQVDDLLSEINLRVEAGERVLVTTLTKRMAEQLTEFLSENGVKVRYLHSDIDT 500

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 501 VERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA 560

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRR KQ+  N+ + I P+ V ++I ++ID +  
Sbjct: 561 ARNVNGTAILYADRITDSMRKAIDETERRRAKQMAFNEANGITPRGVIKRIKDIIDGVYD 620

Query: 739 EDAATTNI---SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                  +      A+   +S+K+    +K L K M   A NL FE+AA++RD++ +LK+
Sbjct: 621 AGEVKAELLAAQERARYEDMSEKQVSKEIKRLEKLMMDHAKNLEFEKAAQVRDQLAKLKA 680

Query: 796 SPYFQGLDDS 805
             +    +++
Sbjct: 681 QLFGASGEEA 690


>gi|238799260|ref|ZP_04642706.1| UvrABC system protein B [Yersinia mollaretii ATCC 43969]
 gi|238716894|gb|EEQ08764.1| UvrABC system protein B [Yersinia mollaretii ATCC 43969]
          Length = 670

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/663 (55%), Positives = 471/663 (71%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHSEFKPAGDQPDAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F +++E +S F PLTGQ    V    +Y
Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDDEVERLSIFDPLTGQLQHEVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L +  +LLE QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKVELADRRKVLLENNKLLEEQRIAQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+    P TI VSATPG +ELE+  G I+EQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFEASAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLVEHGARVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-----P 735
           N+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +KI +++       
Sbjct: 545 NLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERGITPQGLNKKIGDLLQLGQPST 604

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                     ++     LSL  K     ++ L  +M+  A NL FE+AA +RD++ +L+ 
Sbjct: 605 RGKGKGRGGKVADPDNYLSLPPKALDQKIRELEAKMYTYAQNLEFEQAAELRDQVHQLRQ 664

Query: 796 SPY 798
              
Sbjct: 665 QFI 667


>gi|90579146|ref|ZP_01234956.1| excinuclease ABC subunit B [Vibrio angustum S14]
 gi|90439979|gb|EAS65160.1| excinuclease ABC subunit B [Vibrio angustum S14]
          Length = 675

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/669 (53%), Positives = 482/669 (72%), Gaps = 10/669 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + ++Y PSGDQP AIAQL+ G+ S    Q LLGVTGSGKTFT+A VI    RP +++
Sbjct: 4   LFSLASEYSPSGDQPTAIAQLVDGLDSGLAHQTLLGVTGSGKTFTVANVIAQANRPTLIL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K FFP++AVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR
Sbjct: 64  APNKTLAAQLYGEMKEFFPNSAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+++SVS IYG+G  +SY +M++ ++ GD ++Q+++L  L + QY R
Sbjct: 124 LSATKALMERRDVIIIASVSAIYGLGDPDSYLKMMLHVRRGDFLDQRDILRRLAELQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIK 378
            D+   RGTFRV G+ I+IFP+  E  A R+ +F +++E IS F PLTG    R++    
Sbjct: 184 NDMAFERGTFRVRGEVIDIFPAESEKEAIRLELFDDEVECISSFDPLTGSITHRDMPRTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  A++ IK+EL +R  +     +LLE QR+ QR  +D+EM+   G 
Sbjct: 244 IYPKTHYVTPREKILDAIEGIKKELVLRKEQFLGNNKLLEEQRISQRTQFDIEMMNELGF 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+ QI  MYRGD  RK  L 
Sbjct: 304 CSGIENYSRYLSGRAEGEPPPTLFDYLPADGLLIIDESHVTVSQIGAMYRGDRSRKENLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP++FEE+  L P TI VSATPG++E+E+    I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPMKFEEFESLAPQTIYVSATPGNYEIEKSGNDIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI++  ++G R+L+T LTKRMAEDLTEYL +  ++VRY+HS++ T
Sbjct: 424 IEVRPVGTQVDDLLSEIHIREKKGERVLVTTLTKRMAEDLTEYLTDHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV  K ILY D IT S++ AI+ET RRREKQ+E+N +H I PQ + +KI ++++    
Sbjct: 544 ARNVEGKAILYGDRITGSMERAINETQRRREKQIEYNLEHGITPQKLNKKIGDILELGAP 603

Query: 739 EDAATTN---------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                +                  +LS ++ ++ ++ L KQM+  A NL FE+AA  RD+
Sbjct: 604 SSRGKSRNKAADLHKVAESKGTYSALSPQELESQIQVLEKQMYDFAQNLEFEQAAETRDK 663

Query: 790 IKRLKSSPY 798
           I +L+    
Sbjct: 664 IHKLRKQFI 672


>gi|163736820|ref|ZP_02144238.1| excinuclease ABC, B subunit [Phaeobacter gallaeciensis BS107]
 gi|161389424|gb|EDQ13775.1| excinuclease ABC, B subunit [Phaeobacter gallaeciensis BS107]
          Length = 732

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/678 (62%), Positives = 528/678 (77%), Gaps = 2/678 (0%)

Query: 118 KNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVT 177
           K+  +                  F M T++ P+GDQP AI +L +G+   E+ Q+LLG T
Sbjct: 8   KSMPMMADRAPQHRPKLEGG-REFVMHTEFDPAGDQPTAIKELSEGVLEGERNQVLLGAT 66

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G+GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP N+VEYFVS+YDYYQPEAY
Sbjct: 67  GTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPENSVEYFVSFYDYYQPEAY 126

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
           V R+DTYIEKES INEQIDRMRHSATRSLLER+D I+++SVSCIYGIGSVE+YS M   L
Sbjct: 127 VARSDTYIEKESQINEQIDRMRHSATRSLLERDDVIIIASVSCIYGIGSVETYSAMTQDL 186

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           K+GD  +Q+++++ LV QQYKR D    RG+FRV GDS+EIFP+HLED AWR+S FG ++
Sbjct: 187 KVGDEYDQRQVMADLVAQQYKRNDQAFQRGSFRVRGDSLEIFPAHLEDRAWRLSFFGEEL 246

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           E I+EF PLTG+K    + I++YANSHYVTP+PTL  A+  IKEELKMRL +L  EG+LL
Sbjct: 247 EGITEFDPLTGEKTGTFDQIRVYANSHYVTPKPTLKQAVISIKEELKMRLDQLVGEGKLL 306

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESH 477
           EAQRLEQR  +D+EMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESH
Sbjct: 307 EAQRLEQRTNFDIEMLEATGHCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESH 366

Query: 478 VTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537
           V++PQI GMY+GD  RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WEL
Sbjct: 367 VSVPQIGGMYKGDHRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPSKWEL 426

Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           EQ  G+  EQ+IRPTGL+DP VEIR    QV+D+ DE+      G R L+T LTKRMAED
Sbjct: 427 EQSSGVFAEQVIRPTGLLDPQVEIRPVDMQVDDLLDEVRRVTADGFRTLVTTLTKRMAED 486

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTEY++E+ I+VRYMHS++ TLERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAIL
Sbjct: 487 LTEYMHEQGIKVRYMHSDIDTLERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAIL 546

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           DADKEGFLRS+TSLIQTIGRAARN   +VI+YAD IT S++ A+ ET RRR+KQ+ +N++
Sbjct: 547 DADKEGFLRSETSLIQTIGRAARNAEGRVIMYADRITGSMERALGETNRRRDKQIAYNEE 606

Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
           H I P +VK+ + +V+  +   D     ++    +  +     +AHL  LR+QM  AA+N
Sbjct: 607 HGITPATVKKNVEDVLAGLYAGDVDMNRVTATIDK-PMHGANLEAHLAGLREQMRKAAEN 665

Query: 778 LNFEEAARIRDEIKRLKS 795
           L FEEAAR+RDE+KRL++
Sbjct: 666 LEFEEAARLRDEVKRLEA 683


>gi|312796019|ref|YP_004028941.1| Excinuclease ABC subunit B [Burkholderia rhizoxinica HKI 454]
 gi|312167794|emb|CBW74797.1| Excinuclease ABC subunit B [Burkholderia rhizoxinica HKI 454]
          Length = 755

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/671 (55%), Positives = 487/671 (72%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D + +Q+   + P+GDQP AI QL++GI      Q LLGVTGSGKTFTMA VI  + RPA
Sbjct: 80  DGSPYQLYQPFPPAGDQPEAIRQLVEGIQDGLAFQTLLGVTGSGKTFTMANVIARLGRPA 139

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SS+NE I+
Sbjct: 140 IVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSVNEHIE 199

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SLLER D ++V++VS IYGIG+   Y QMI+ L+ GD V Q+++++ L+  Q
Sbjct: 200 QMRLSATKSLLERRDVVIVATVSAIYGIGNPSEYHQMILTLRDGDRVGQRDIIARLIAMQ 259

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D+   RGTFRV GD+I++FP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 260 YMRNDVDFQRGTFRVRGDTIDVFPAEHAEMAVRVELFDDEVESLHLFDPLTGRVRQRIPR 319

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IKEEL+ RL    +EG+L+EAQRLEQR  +DLEML+  
Sbjct: 320 FTVYPSSHYVTPRDTVLRAVETIKEELRERLAFFHQEGKLVEAQRLEQRTRFDLEMLQEL 379

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P DSL+F+DESHV I Q++ MY GD  RK  
Sbjct: 380 GFCKGIENYSRHFSGAAPGEPPPTLCDYLPADSLMFLDESHVLIGQLNAMYNGDRARKEN 439

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPL+F E+       + VSATP  +E     G +VEQ++RPTGLVD
Sbjct: 440 LVEYGFRLPSALDNRPLKFHEFERKMRQAVFVSATPAGYEQRNA-GQVVEQVVRPTGLVD 498

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A +QV+DV  EIN     G R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 499 PQIEVRPAISQVDDVLSEINQRVAAGERVLVTVLTKRMAEQLTEFLADHGVKVRYLHSDI 558

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 559 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 618

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN   ILY DTIT S++ A+DET RRR KQ+++N+++ I P+ V ++I ++ID +
Sbjct: 619 RAARNVNGYAILYGDTITDSMRRALDETERRRRKQIQYNERNGIVPRGVVKRIKDIIDGV 678

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S K+    +K L KQM   A NL FE+AA+ RD++ R 
Sbjct: 679 YDVDDARAELRAQQERAKIEDMSDKQLAKEIKKLEKQMLDYAKNLEFEKAAQTRDQLARF 738

Query: 794 KSSPYFQGLDD 804
           K   +   + D
Sbjct: 739 KQRAFGASVGD 749


>gi|83950333|ref|ZP_00959066.1| excinuclease ABC subunit B [Roseovarius nubinhibens ISM]
 gi|83838232|gb|EAP77528.1| excinuclease ABC subunit B [Roseovarius nubinhibens ISM]
          Length = 732

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/684 (61%), Positives = 533/684 (77%), Gaps = 6/684 (0%)

Query: 112 SDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ 171
              P++         R        +    F+M T++  +GDQP AIA+L +G+   E+ Q
Sbjct: 8   GSQPMMHAPAPDVKARP-----KLEGGKRFEMVTEFSAAGDQPTAIAELTQGVTEGERDQ 62

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           +LLG TG+GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP+NAVEYFVSYYDY
Sbjct: 63  VLLGATGTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPNNAVEYFVSYYDY 122

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           YQPEAYVPR+DT+IEKES INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y 
Sbjct: 123 YQPEAYVPRSDTFIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYG 182

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
            M   LK+G   +Q+++++ LV QQY+R D G  RG+FRV GDS+EI+P+HL+D AW++S
Sbjct: 183 AMTQDLKVGSDYDQRKVIADLVAQQYRRNDHGFQRGSFRVRGDSLEIWPAHLDDRAWKLS 242

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            FG ++E I+EF PLTG+K    + I++YANSHYVTP+PT+  A+  IK+EL+ RL +L 
Sbjct: 243 FFGEELEAITEFDPLTGEKTDTFDQIRVYANSHYVTPKPTMQQAIIGIKKELRQRLDQLV 302

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
            EG+LLEAQRLEQR  +DLEMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++
Sbjct: 303 GEGKLLEAQRLEQRCNFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIV 362

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           F DESHV++PQI GMYRGD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSAT
Sbjct: 363 FADESHVSVPQIGGMYRGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSAT 422

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
           P +WELEQ  G+  EQ+IRPTGL+DP +EIR   TQV+D+ DE+   +  G R L T LT
Sbjct: 423 PAAWELEQTGGVFTEQVIRPTGLLDPQIEIRPVETQVDDLLDEVRRVSAAGYRTLCTTLT 482

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           KRMAEDLTEY++E+ IRVRYMHS++ T+ERIEI+RDLRLG FDVL+GINLLREGLDIPEC
Sbjct: 483 KRMAEDLTEYMHEQGIRVRYMHSDIDTIERIEILRDLRLGAFDVLIGINLLREGLDIPEC 542

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
           GLVAILDADKEGFLRS+TSLIQTIGRAARN + +VI+YAD IT S++ A+ ET RRR KQ
Sbjct: 543 GLVAILDADKEGFLRSETSLIQTIGRAARNADGRVIMYADRITGSMERAMGETERRRAKQ 602

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771
           + +N++H I P +VK+ + +++  +   D   + ++    + SL     +  L+ LR  M
Sbjct: 603 IAYNEEHGITPATVKKNVEDILAGLYKGDTDQSRVTATIDK-SLHGGNLETVLEGLRADM 661

Query: 772 HLAADNLNFEEAARIRDEIKRLKS 795
             AA+NL FEEAAR+RDE+KRL++
Sbjct: 662 RKAAENLEFEEAARLRDEVKRLEA 685


>gi|325578560|ref|ZP_08148660.1| excision endonuclease subunit UvrB [Haemophilus parainfluenzae ATCC
           33392]
 gi|325159796|gb|EGC71926.1| excision endonuclease subunit UvrB [Haemophilus parainfluenzae ATCC
           33392]
          Length = 678

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/671 (55%), Positives = 484/671 (72%), Gaps = 8/671 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + +D+ PSGDQP AI +L++ +      Q LLGVTGSGKTFT+A VI  + RPA
Sbjct: 6   NTKPFILHSDFKPSGDQPQAIEKLVENLEDGLAHQTLLGVTGSGKTFTIANVIATLNRPA 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI+
Sbjct: 66  MLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIE 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  + Q+++L+ L + Q
Sbjct: 126 QMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIINQRQILAKLAELQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V  
Sbjct: 186 YTRNDQAFQRGTFRVRGEVIDIFPAESDDRAIRIELFDDEIERLSLFDPLTGTSFGAVPR 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y  +HYVTPR  +  A++ IK EL  R     KE +LLE QR+ QR  +D+EM+   
Sbjct: 246 FTVYPKTHYVTPRERILDAIEKIKAELVQRREYFIKEHKLLEEQRITQRTQFDIEMMNEL 305

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK T
Sbjct: 306 GYCSGIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKET 365

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    IV+Q++RPTGL+D
Sbjct: 366 LVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGTEIVDQVVRPTGLLD 425

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EIR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++
Sbjct: 426 PQIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDI 485

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 486 DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 545

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN+N K ILYAD+ITKS++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D  
Sbjct: 546 RAARNLNGKAILYADSITKSMEKAITETNRRREKQMKYNEEHGIVPQALNKKVGELLDIG 605

Query: 737 LLEDAATTNISIDAQQ--------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
              +    +                  S K+ +  +K L +QM+  A +L FE+AA +RD
Sbjct: 606 QGANQKAKSKQRGKTAAEPTALYNAPKSAKEFQQQIKKLEQQMYKFAQDLEFEKAAAVRD 665

Query: 789 EIKRLKSSPYF 799
           ++ +L+     
Sbjct: 666 KLHQLREQFMI 676


>gi|253990411|ref|YP_003041767.1| excinuclease ABC subunit B [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781861|emb|CAQ85024.1| uvrabc system protein b (protein uvrb) (excinuclease abc subunit b)
           [Photorhabdus asymbiotica]
          Length = 673

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/664 (55%), Positives = 472/664 (71%), Gaps = 4/664 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +D+ P GDQP AI QL +G+      Q LLGVTGSGKTFT+A VI  + RP +V
Sbjct: 7   KVFKLHSDFEPGGDQPEAICQLQEGLEDGLAHQTLLGVTGSGKTFTIANVIANLNRPTMV 66

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLYSE K+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 67  LAPNKTLAAQLYSEMKDFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 126

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D IVV+SVS IYG+G  +SY +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 127 RLSATKALLERRDVIVVASVSAIYGLGDPDSYLKMMLHLTNGMIIDQRSILRRLAELQYT 186

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  ++ A RV +F +++E +S F PLTGQ   NV    
Sbjct: 187 RNDQVFQRGTFRVRGEVIDIFPAESDEHALRVELFDDEVERLSLFDPLTGQVQYNVPRYT 246

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  AM+ IK EL+ R   L   G+LLE QR+ QR  +DLEM+   G 
Sbjct: 247 VYPKTHYVTPRERIIQAMEQIKIELEQRRKVLLANGKLLEEQRITQRTQFDLEMMNELGY 306

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 307 CSGIENYSRYLSGRTEGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRSRKETLV 366

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFR+PS +DNRPLRFEE+  L P TI VSATPG +ELE+  G +VEQ++RPTGL+DP 
Sbjct: 367 EYGFRMPSALDNRPLRFEEFEALAPQTIYVSATPGKYELEKSGGDVVEQVVRPTGLLDPE 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 427 VEVRPVTTQVDDLLSEIRIRAVKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 487 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN++ K ILY D IT S+  AI ET RRR KQ   N +  I P+ + +KI +++     
Sbjct: 547 ARNLHGKAILYGDKITDSMAKAIGETERRRTKQQIFNAERGIVPKGLNKKIGDILQIGQP 606

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      ++       LS K+ +  ++ L  +M+  A +L FE AA +RD+++ L+
Sbjct: 607 AGGKGKTKGKAVATTEAFSKLSAKELENKIRELEAKMYQHAQDLEFELAANVRDQVQILR 666

Query: 795 SSPY 798
               
Sbjct: 667 EQFI 670


>gi|83589120|ref|YP_429129.1| excinuclease ABC subunit B [Moorella thermoacetica ATCC 39073]
 gi|83572034|gb|ABC18586.1| Excinuclease ABC subunit B [Moorella thermoacetica ATCC 39073]
          Length = 663

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/660 (56%), Positives = 477/660 (72%), Gaps = 4/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++DY P GDQP AIA L++G+    + Q LLG TG+GKT+TMA+VI+A+QRP +
Sbjct: 1   MPPFILKSDYQPRGDQPRAIAALVEGLKKGYRHQTLLGATGTGKTYTMAQVIQAVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQL  EFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++ID+
Sbjct: 61  VLAPNKTLAAQLCGEFKEFFPDNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+GS E YS +++ L+ G   ++  +L  LV  QY
Sbjct: 121 LRHSATAALFERRDVIIVASVSCIYGLGSPEDYSTLMLSLREGQEYDRDAILRKLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D    RGTFRV GD IEIFP+   + A RV MFG++IE + E   LTG+ +     +
Sbjct: 181 SRNDYDFKRGTFRVRGDVIEIFPASFTEKAIRVEMFGDEIERLLEIDTLTGEILGRRSHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++  SHYV     +  A++ I+ EL+ RL EL  +G+LLEAQRLEQR  +DLEM+   G
Sbjct: 241 AVFPASHYVVEEAKMERALESIQAELEERLRELRAQGKLLEAQRLEQRTNFDLEMMREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSR+LTGR PGEPP TL +Y P+D L+ +DESH+T+PQI GMY GD  RK TL
Sbjct: 301 FCKGIENYSRHLTGRAPGEPPYTLLDYFPDDFLMMIDESHITVPQIGGMYEGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL FEE+       I VSATPG +ELE  Q  +VEQIIRPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPLTFEEFCRHINQVIYVSATPGPYELEHSQQ-VVEQIIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R  + Q++D+  EI     +  R+L+T LTKRMAEDLT+YL E  ++VRYMHS++ 
Sbjct: 420 EVLVRPVKGQIDDLLAEIQKRVAKNQRVLVTTLTKRMAEDLTDYLREAGLKVRYMHSDIG 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 AIERMEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VI+YADTIT S++ AIDET RRR+ Q+E+N++H I P++V + + EVI+   
Sbjct: 540 AARNAEGQVIMYADTITDSMRRAIDETNRRRQIQMEYNRRHGITPRTVSKPVREVIEATR 599

Query: 738 LEDAATTNISIDA---QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             +      +      ++  LSK++ KA +  L K+M  AA  L FE AA +RD I  L+
Sbjct: 600 AAEEPARYETAGEGARKKTKLSKRELKALISQLEKEMRAAAKRLEFERAAELRDAILELR 659


>gi|15602294|ref|NP_245366.1| excinuclease ABC subunit B [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13431963|sp|P57844|UVRB_PASMU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|12720682|gb|AAK02513.1| UvrB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 678

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/666 (56%), Positives = 489/666 (73%), Gaps = 8/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ PSGDQP AI QL++G+ +    Q LLGVTGSGKTFT+A VI  + RPA+V+A
Sbjct: 10  FILHSDFSPSGDQPQAITQLIEGLENGLAHQTLLGVTGSGKTFTIANVIAKLNRPAMVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR 
Sbjct: 70  PNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+S LER D IVV+SVS IYG+G  +SY +M++ L+ G  + Q+++L+ L + QY R 
Sbjct: 130 SATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQTGAIINQRQILAQLAELQYTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V    IY
Sbjct: 190 DQAFERGTFRVRGEIIDIFPAESDDKAIRIELFDDEIERLSLFDPLTGSSFGPVPRYTIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK+EL  R   L +  +LLE QR+ QR  +D+EM+   G C 
Sbjct: 250 PKTHYVTPRERILNAIEKIKQELAERRQFLLENNKLLEEQRITQRTQFDIEMMNELGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTLF+Y+P D+LL +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 310 GIENYSRYLSGRNEGEPPPTLFDYMPSDALLIIDESHVTVPQIGGMYRGDRSRKETLVEY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+  G I++Q++RPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGGEIIDQVVRPTGLLDPEIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  E    A Q  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ T+E
Sbjct: 430 IRPVAIQVDDLLSEARQRADQNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PIL 737
           N+  K ILYAD IT S+Q AI ET RRREKQ+++N+   I PQ++ +K+ E++D      
Sbjct: 550 NLKGKAILYADRITNSMQKAITETNRRREKQMKYNEARGIVPQALNKKVGELLDIGQGAN 609

Query: 738 LEDAATTNISIDAQQLSL-----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +  A  N    A+  +L     + K+ +  +K L +QM+  A +L FE+AA +RD++++
Sbjct: 610 QKAKANRNAKKVAEPTALYVVPQTAKEYQQQIKKLEQQMYKYAQDLEFEKAAAVRDQLQQ 669

Query: 793 LKSSPY 798
           L+   +
Sbjct: 670 LREHFF 675


>gi|238785218|ref|ZP_04629210.1| UvrABC system protein B [Yersinia bercovieri ATCC 43970]
 gi|238713896|gb|EEQ05916.1| UvrABC system protein B [Yersinia bercovieri ATCC 43970]
          Length = 680

 Score =  854 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/663 (55%), Positives = 470/663 (70%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 15  FKLHSEFKPAGDQPDAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 74

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 75  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 134

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 135 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSRN 194

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ    V    +Y
Sbjct: 195 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTVY 254

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QR+ QR  +DLEM+   G C 
Sbjct: 255 PKTHYVTPRERILQAMEEIKVELAERRKVLLDNNKLLEEQRIAQRTQFDLEMMNELGYCS 314

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 315 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 374

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+    P TI VSATPG +ELE+  G I+EQ++RPTGL+DP +E
Sbjct: 375 GFRLPSALDNRPMRFEEFEASAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIE 434

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 435 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLTEHGARVRYLHSDIDTVE 494

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 495 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 554

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----PI 736
           N+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +KI +++       
Sbjct: 555 NLNGKAILYGDRITASMEKAISETERRRAKQQAYNEERGIIPQGLNKKIGDLLQLGQPST 614

Query: 737 LLEDAATTNISIDA-QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             +       + D    +SL  K     ++ L  +M+  A NL FE+AA +RD++ +L+ 
Sbjct: 615 RGKGKGRGGKAADPNNYMSLPPKALDQKIRELEAKMYTYAQNLEFEQAAELRDQVHQLRQ 674

Query: 796 SPY 798
              
Sbjct: 675 QFI 677


>gi|283784539|ref|YP_003364404.1| UvrABC system protein B (excinuclease ABC subunit B) [Citrobacter
           rodentium ICC168]
 gi|282947993|emb|CBG87557.1| UvrABC system protein B (excinuclease ABC subunit B) [Citrobacter
           rodentium ICC168]
          Length = 673

 Score =  854 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/665 (56%), Positives = 476/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTG     V    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGHVEGTVPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILQAMEEIKDELGERRKSLLANNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPV 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRARASINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N +H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITASMAKAISETERRREKQQQYNAEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      + +    D+ ++ +S K  +  +  L  QM   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRSTAKADSVEMDMSPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|332759678|gb|EGJ89981.1| excinuclease ABC, B subunit [Shigella flexneri 4343-70]
 gi|333007118|gb|EGK26610.1| excinuclease ABC, B subunit [Shigella flexneri K-218]
          Length = 673

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/665 (55%), Positives = 476/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D IVV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM++  G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMDELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDL EYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLAEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV------ 732
           ARNVN K ILY D  T S+  AI ET RRREKQ ++N++H I PQ + +K++++      
Sbjct: 543 ARNVNGKAILYGDRSTPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 733 IDPILLEDAATTNISIDAQQLSLS--KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           I     +    +   ++   + +    K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMLPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|145636889|ref|ZP_01792554.1| excinuclease ABC subunit B [Haemophilus influenzae PittHH]
 gi|145269970|gb|EDK09908.1| excinuclease ABC subunit B [Haemophilus influenzae PittHH]
          Length = 679

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/674 (55%), Positives = 486/674 (72%), Gaps = 9/674 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA
Sbjct: 6   NTKPFILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPA 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI+
Sbjct: 66  MLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIE 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + Q
Sbjct: 126 QMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V  
Sbjct: 186 YTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPR 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   
Sbjct: 246 FTIYPKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNEL 305

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK T
Sbjct: 306 GYCSGIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKET 365

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+    I++Q++RPTGL+D
Sbjct: 366 LVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGAYELEKSGSEIIDQVVRPTGLLD 425

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EIR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++
Sbjct: 426 PLIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDI 485

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 486 DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 545

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN+N K ILYAD+ITKS++ AI ET RRR KQ+++N++H I PQ++ +K+ E++D  
Sbjct: 546 RAARNLNGKAILYADSITKSMEKAITETNRRRAKQIKYNEEHGIVPQALNKKVGELLDIG 605

Query: 737 LLEDAATTNISIDAQ---------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
              +          +             + K+ +  +K L +QM+  A +L FE+AA IR
Sbjct: 606 QGANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIR 665

Query: 788 DEIKRLKSSPYFQG 801
           D++ +L+    F  
Sbjct: 666 DQLHQLREQFVFDN 679


>gi|114320247|ref|YP_741930.1| excinuclease ABC subunit B [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226641|gb|ABI56440.1| Excinuclease ABC subunit B [Alkalilimnicola ehrlichii MLHE-1]
          Length = 675

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/668 (57%), Positives = 498/668 (74%), Gaps = 7/668 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             FQ+Q+ + P+GDQP AIA L++G+++ E+ Q LLGVTGSGKTFTMA VI+A+QRPA+V
Sbjct: 3   ARFQLQSRFQPAGDQPTAIASLVEGLNAGERHQTLLGVTGSGKTFTMANVIQAVQRPAMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E + FFP N VEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMREFFPKNRVEYFVSYYDYYQPEAYVPASDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D I+V+SVS IYG+G  +SY  M++ L  G++++Q+++L  L + QY 
Sbjct: 123 RLSATKAILERQDTIIVASVSSIYGLGDPQSYMAMLLHLVRGETIDQRQILRRLAEMQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RGT+R  G+ I+IFP+  ED A RV +F ++IEE+S F PLTG+ +R V  + 
Sbjct: 183 RNDMDFTRGTYRARGEVIDIFPADAEDEAVRVELFDDEIEELSHFDPLTGEVLRRVPRLT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  A+  IKEEL+ RL EL    +L+EAQRLEQR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRGQVLRAIDAIKEELRDRLAELRAADKLVEAQRLEQRTLFDLEMMHELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+PED+++F+DESHVTIPQ+ GMY+GD  RK TL 
Sbjct: 303 CNGIENYSRHLSGRAPGEPPPTLFDYVPEDAVVFIDESHVTIPQLGGMYKGDRSRKQTLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL+FEEW  L P  ++VSATPG WE E  Q  +VEQ++RPTGL+DP 
Sbjct: 363 DYGFRLPSALDNRPLKFEEWLRLAPQCVLVSATPGPWEHEHSQ-RVVEQVVRPTGLLDPE 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R A +QV+DVY EI   A++  R+L+T LTKRMAEDLTEYL+E  +RVRY+HS+V T
Sbjct: 422 VEVRPALSQVDDVYGEITERARRDERVLVTTLTKRMAEDLTEYLHENGVRVRYLHSDVDT 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 482 VERTEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN+  K ILY D IT S++ AIDET RRR KQ  HN+ H I P+ V++ + ++++    
Sbjct: 542 ARNLGGKAILYGDEITNSMRRAIDETERRRAKQQAHNEAHGITPKGVRKDVADIMERGGA 601

Query: 735 --PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             P              A+    +  +    +K L KQM   A NL FEEAA++RDEIKR
Sbjct: 602 PIPGAPRGRIDKVAEEAAKYGRYTPAEAVKRIKQLEKQMREHARNLEFEEAAQLRDEIKR 661

Query: 793 LKSSPYFQ 800
           L+     +
Sbjct: 662 LERYALGR 669


>gi|227112999|ref|ZP_03826655.1| excinuclease ABC subunit B [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 670

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/665 (55%), Positives = 471/665 (70%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + +D+ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP ++
Sbjct: 3   KVFTLNSDFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMM 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTG  ++ V    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHVLQTVPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK EL  R   L    +L+E QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILQAMEDIKVELADRKKVLLANDKLVEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+  G +++Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI L A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRLRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  K ILY D IT S+  AI ET RRREKQ  +N +H I PQ + +KI +++     
Sbjct: 543 ARNLRGKAILYGDKITASMAKAIGETERRREKQEAYNTEHGIVPQGINKKISDILQLGQP 602

Query: 739 EDAAT-----TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
            +              A+   ++ K  +  ++ L  +M   A NL FEEAA +RDE++ L
Sbjct: 603 TNKGKGRGNRKAAEPAARYELMTPKALELKIRELESKMLTHAQNLEFEEAAALRDEVQAL 662

Query: 794 KSSPY 798
           ++   
Sbjct: 663 RAQFI 667


>gi|300722421|ref|YP_003711709.1| ATP-dependent DNA excision repair enzyme UvrAC [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628926|emb|CBJ89509.1| ATP-dependent DNA excision repair enzyme UvrAC [Xenorhabdus
           nematophila ATCC 19061]
          Length = 675

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/671 (55%), Positives = 472/671 (70%), Gaps = 6/671 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +    F++ +D+ P GDQP+AI QL +G+      Q LLGVTGSGKTFT+A VI  + 
Sbjct: 2   SKEANKVFKLHSDFKPGGDQPSAIRQLQEGLEDGLAHQTLLGVTGSGKTFTIANVIANLN 61

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPA+++APNK LAAQLYSE K FFP N+VEYFVSYYDYYQPEAYVP +DT+IEK++S+NE
Sbjct: 62  RPAMILAPNKTLAAQLYSEMKEFFPENSVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNE 121

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
            I++MR SAT++LLER D IVV+SVS IYG+G  ESY +M++ L  G  ++Q+ +L  L 
Sbjct: 122 HIEQMRLSATKALLERRDVIVVASVSAIYGLGDPESYLKMMLHLTDGMLIDQRAILRRLA 181

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
           + QY R D    RGTFRV G+ I+IFP+   + A RV +F +++E +S F PLTGQ   N
Sbjct: 182 ELQYTRNDQAFQRGTFRVRGEVIDIFPAESNEHALRVELFDDEVERLSLFDPLTGQVQYN 241

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           V    +Y  +HYVTPR  +  +M  IK EL+ R   L   G+LLE QR+ QR  +DLEM+
Sbjct: 242 VPRYTVYPKTHYVTPRERILQSMAEIKIELEQRRQVLLASGKLLEEQRITQRTQFDLEMM 301

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
              G C  IENYSRYL+GR  GEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  R
Sbjct: 302 NELGYCSGIENYSRYLSGRATGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRSR 361

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL EYGFRLPS +DNRPLRFEE+  L P TI +SATPG +ELE+    IVEQ++RPTG
Sbjct: 362 KETLVEYGFRLPSALDNRPLRFEEFEALAPQTIYISATPGHYELEKSGNEIVEQVVRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VE+R   TQV+D+  EI L A +  R+L+T LTKRMAEDLTEYL E   RVRY+H
Sbjct: 422 LIDPEVEVRPVTTQVDDLMSEIRLRAVKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQ
Sbjct: 482 SDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAARN++ K ILY D IT S+  AI ET RRR KQ   N +H I P  + +KI +++
Sbjct: 542 TIGRAARNLHGKAILYGDRITDSMAKAIGETERRRVKQQAFNDEHGIVPTGLNKKIGDIL 601

Query: 734 DPILLEDAATTNISIDA------QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                 +                    LS K+ +  ++ L  +M+  A +L FE+AA +R
Sbjct: 602 RIGQPVNGKGKTRGKSKVTLGTDDYQKLSAKELENKIRELENKMYQHARDLEFEQAANVR 661

Query: 788 DEIKRLKSSPY 798
           D+++ L++   
Sbjct: 662 DQVQALRAQFI 672


>gi|240948695|ref|ZP_04753067.1| excinuclease ABC subunit B [Actinobacillus minor NM305]
 gi|240296911|gb|EER47489.1| excinuclease ABC subunit B [Actinobacillus minor NM305]
          Length = 671

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/665 (56%), Positives = 488/665 (73%), Gaps = 6/665 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K    F + + + PSGDQP AIA+L++G++     Q LLGVTGSGKTFT+A VI  + RP
Sbjct: 3   KQGKPFILHSPFKPSGDQPTAIAKLVEGLNDGLAHQTLLGVTGSGKTFTIANVIATLNRP 62

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
           A+V+APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQI
Sbjct: 63  AMVLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQI 122

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           ++MR SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G+ ++Q+++LS L + 
Sbjct: 123 EQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGEMIDQRKILSRLAEL 182

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D    R TFRV G+ I+IFP+  +DVA RV +F ++IE +S F PLTG  +  V 
Sbjct: 183 QYTRNDQAFQRATFRVRGEVIDIFPAESDDVALRVELFDDEIENLSLFDPLTGHSLGRVP 242

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              IY  +HYVTPR  +  A++ IKEEL  R     KE +LLE QR+ QR  +D+EM+  
Sbjct: 243 RYTIYPKTHYVTPRERILEAIEQIKEELAERRTYFIKENKLLEEQRIAQRTQFDIEMMNE 302

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GM+RGD  RK 
Sbjct: 303 LGYCSGIENYSRYLSGRKEGEPPPTLFDYMPSDGLLIIDESHVTVPQIGGMFRGDRARKE 362

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL +YGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    +++Q++RPTGL+
Sbjct: 363 TLVQYGFRLPSALDNRPLRFEEFERLSPQTIYVSATPGPYELEK-NPDVIDQVVRPTGLL 421

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +E+R   TQV+D+  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS+
Sbjct: 422 DPIIEVRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHSD 481

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + T+ER+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTI
Sbjct: 482 IDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 541

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D 
Sbjct: 542 GRAARNLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIVPQALNKKVGELLDI 601

Query: 736 ILLEDAATTNISIDAQQ-----LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
              +    +  S  +       +  S+K+ +  LK L +QM   A +L FE+AA +RD+I
Sbjct: 602 GQTDKPKRSKKSAKSTDNQTAYIPKSRKELEKELKVLEQQMRDFAKDLEFEKAAAVRDKI 661

Query: 791 KRLKS 795
             LK+
Sbjct: 662 GVLKA 666


>gi|189426491|ref|YP_001953668.1| excinuclease ABC subunit B [Geobacter lovleyi SZ]
 gi|189422750|gb|ACD97148.1| excinuclease ABC, B subunit [Geobacter lovleyi SZ]
          Length = 665

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/662 (54%), Positives = 482/662 (72%), Gaps = 1/662 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ T Y PSGDQP AI +L+ GI   +K Q+LLGVTGSGKTFT+A VI    RPA+
Sbjct: 1   MSDFKLATTYTPSGDQPQAIDELVAGIERGDKHQVLLGVTGSGKTFTVANVIARTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++ID+
Sbjct: 61  VLAPNKTLAAQLYGEFKELFPDNAVEYFVSYYDYYQPEAYLPNTDTFIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT SLL R D I+V+SVSCIYGIGS E+Y  M +    GD   +  LL  LV+ QY
Sbjct: 121 LRHSATMSLLTRPDVIIVASVSCIYGIGSPEAYQAMHIFFHQGDDYGRDTLLKKLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D    RGTFRV GD IEIFP++  + A R+  FG+++E IS+  PL G  ++ +  +
Sbjct: 181 ERNDTDFHRGTFRVRGDVIEIFPAYDSERALRIEFFGDEVETISQIDPLRGVVLQKLTKV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV+ +  L  ++  I+ +L+ R+   + +G+LLEAQR+EQR  YD+EM+E  G
Sbjct: 241 SIFPASHYVSSKENLERSVAQIRLDLEERIRLFKDQGKLLEAQRIEQRTYYDIEMMEEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSRYL  R PGEPP TL +Y P+D +LFVDESH+T  Q+ GMYRGD  RK TL
Sbjct: 301 FCQGIENYSRYLDNRQPGEPPFTLIDYFPKDFILFVDESHITNAQVGGMYRGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP+ +DNRPL F+E+       + VSATP  +EL+Q  G+ VEQ+IRPTGLVDP
Sbjct: 361 VEYGFRLPAALDNRPLNFQEFESRINQVVHVSATPADYELQQAGGVFVEQVIRPTGLVDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR A  QV+D+  E+ L   +G R+L+T LTKRMAE+LT Y  E  +RVRY+HS++ 
Sbjct: 421 QIEIRPAAGQVDDLLHEVRLTVAKGDRVLVTTLTKRMAEELTNYYQELGVRVRYLHSDID 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++I+R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQT GR
Sbjct: 481 TIERMQILRSLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTCGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ +V++YAD +T+S+Q  +DET RRR KQL +N++H I P++V++ +  +++ I 
Sbjct: 541 AARNVDGRVLMYADQVTRSMQACLDETGRRRSKQLAYNQEHGITPETVRKGMRSILESIA 600

Query: 738 LEDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +D  T  +  D ++   +  K+    +K +RK+M  AA  L+FE+AA +RD IK+L+ +
Sbjct: 601 EKDYVTPPVVADLEEAYGIELKEIPKLIKKMRKEMLAAAKELDFEKAAELRDRIKQLEDA 660

Query: 797 PY 798
             
Sbjct: 661 EL 662


>gi|288554107|ref|YP_003426042.1| excinuclease ABC subunit B [Bacillus pseudofirmus OF4]
 gi|288545267|gb|ADC49150.1| excinuclease ABC subunit B (DinA) SOS protein [Bacillus
           pseudofirmus OF4]
          Length = 658

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/656 (55%), Positives = 476/656 (72%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQPAAI +++ GI   +K Q LLG TG+GKTFT++ VI+ + +P +++A
Sbjct: 5   FELNSPYQPDGDQPAAIKEIVAGIKEGKKHQTLLGATGTGKTFTISNVIQEVNKPTLIIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SINE+ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINEEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS E Y  ++V L+ G  +++  LL +LV  QY R 
Sbjct: 125 SATSALFERKDVIIIASVSCIYGLGSPEEYRDLVVSLRTGMEMDRNALLRNLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EIFP+  ++   RV  FG++I+ ++E   LTG+       + I+
Sbjct: 185 DVNFTRGTFRVRGDVVEIFPASRDEQCIRVEFFGDEIDRMTEVDALTGEIKGERNHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A+  I+ EL+ +L ++ +EG+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREAKLKKAIANIEVELEEQLKKMHEEGKLLEAQRLEQRTRYDLEMMAEMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL ++ PED LL VDESHVT+PQ+ GMY GD  RK  L  +
Sbjct: 305 GIENYSRHLTLREAGATPYTLLDFFPEDFLLIVDESHVTLPQVRGMYNGDRARKEVLVNH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+      ++ VSATPG +ELE     +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLKFDEFEKKISQSVYVSATPGPYELEHTP-KMVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+L+T LTK+M+EDLT+YL E  I+VRY+HSE+KTLE
Sbjct: 424 VRPIEGQIDDMIGEINARVEKNERVLVTTLTKKMSEDLTDYLKEIGIKVRYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIR LR+G FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 484 RIEIIRQLRMGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YAD +TKS+Q+AIDET RRR  Q E+N+KH I P+++++KI EVI   ++ D
Sbjct: 544 NSNGHVIMYADKMTKSMQIAIDETARRRSIQEEYNEKHGITPKTIQKKIPEVIQATIVSD 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 +  A +  LSKK  +A ++ + K+M  AA  LNFE AA +RD +  LK+ 
Sbjct: 604 EDGEATA--APKTKLSKKDKEAMIERMEKEMKDAARELNFERAAELRDLLLELKAE 657


>gi|145633293|ref|ZP_01789024.1| excinuclease ABC subunit B [Haemophilus influenzae 3655]
 gi|145634422|ref|ZP_01790132.1| excinuclease ABC subunit B [Haemophilus influenzae PittAA]
 gi|145638820|ref|ZP_01794428.1| excinuclease ABC subunit B [Haemophilus influenzae PittII]
 gi|229845025|ref|ZP_04465161.1| excinuclease ABC subunit B [Haemophilus influenzae 6P18H1]
 gi|144986139|gb|EDJ92729.1| excinuclease ABC subunit B [Haemophilus influenzae 3655]
 gi|145268402|gb|EDK08396.1| excinuclease ABC subunit B [Haemophilus influenzae PittAA]
 gi|145271792|gb|EDK11701.1| excinuclease ABC subunit B [Haemophilus influenzae PittII]
 gi|229811997|gb|EEP47690.1| excinuclease ABC subunit B [Haemophilus influenzae 6P18H1]
 gi|301169987|emb|CBW29591.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Haemophilus influenzae 10810]
 gi|309750803|gb|ADO80787.1| Excinuclease ABC, subunit B [Haemophilus influenzae R2866]
          Length = 679

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/674 (55%), Positives = 485/674 (71%), Gaps = 9/674 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA
Sbjct: 6   NTKPFILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPA 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI+
Sbjct: 66  MLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIE 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + Q
Sbjct: 126 QMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V  
Sbjct: 186 YTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPR 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   
Sbjct: 246 FTIYPKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNEL 305

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK T
Sbjct: 306 GYCSGIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKET 365

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+D
Sbjct: 366 LVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLD 425

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EIR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++
Sbjct: 426 PLIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDI 485

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 486 DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 545

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN+N K ILYAD+ITKS++ AI ET RRREKQ ++N++H I PQ++ +K+ E++D  
Sbjct: 546 RAARNLNGKAILYADSITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLDIG 605

Query: 737 LLEDAATTNISIDAQ---------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
              +          +             + K+ +  +K L +QM+  A +L FE+AA IR
Sbjct: 606 QGANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIR 665

Query: 788 DEIKRLKSSPYFQG 801
           D++ +L+    F  
Sbjct: 666 DQLHQLREQFVFDN 679


>gi|254456166|ref|ZP_05069595.1| excinuclease ABC, B subunit [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083168|gb|EDZ60594.1| excinuclease ABC, B subunit [Candidatus Pelagibacter sp. HTCC7211]
          Length = 723

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/668 (63%), Positives = 524/668 (78%), Gaps = 6/668 (0%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           I+   +    FQM+TD+ P+GDQP AI QL+ G +  +  Q+LLGVTGSGKTFTMAKVIE
Sbjct: 19  ISPKLEGGKKFQMKTDFKPAGDQPEAIKQLVNGANKDQLSQVLLGVTGSGKTFTMAKVIE 78

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
              RPA+++APNK LAAQLY E K+FFP NAVEYFVSYYDYY PEAYVPR+DTYIEKE+S
Sbjct: 79  KTNRPALILAPNKTLAAQLYGEMKSFFPDNAVEYFVSYYDYYTPEAYVPRSDTYIEKEAS 138

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INEQIDRMRHSATRSLLER+D I+VSSVSCIYG+GSVE+YS+M + LK      ++EL+ 
Sbjct: 139 INEQIDRMRHSATRSLLERDDVIIVSSVSCIYGLGSVEAYSKMTLSLKTNYDYNREELIK 198

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
           SLV  QYKR D    RGTFR  G+ +EIFPSHLED AWR+S+FG+ +E+I EF PLTG  
Sbjct: 199 SLVALQYKRNDQNFYRGTFRARGEYLEIFPSHLEDRAWRLSLFGDKLEKIEEFDPLTGDL 258

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +  ++ IK+YANSHY+TP+PT+  A+  IK EL++ L + +++ +LLEAQRLE+R  +DL
Sbjct: 259 VNELDVIKVYANSHYITPKPTIEQAIIKIKRELEITLKKFKEQNKLLEAQRLEERTKFDL 318

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+E TGSC  IENYSR+L+GR PGEPPPTLFEY P+++L+FVDE HVT+PQ++GMY+GD
Sbjct: 319 EMIEATGSCAGIENYSRFLSGRKPGEPPPTLFEYFPDNTLIFVDECHVTVPQLNGMYKGD 378

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK+ LAEYGFRLPSCMDNRPL+FEEW+ +R  T+ VSATPG WEL+Q +   VEQ+IR
Sbjct: 379 RSRKSNLAEYGFRLPSCMDNRPLKFEEWDAMRTQTVFVSATPGPWELKQTKNKFVEQVIR 438

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DPPVEIR A+ QV+D+  E         R+L+T LTK+MAEDLTEYL+E  I+VR
Sbjct: 439 PTGLIDPPVEIRPAKNQVDDLMHECLKVIDNNYRVLVTTLTKKMAEDLTEYLHENGIKVR 498

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           YMHS++ TLERIEI+RDLRLG FDVLVGINLLREGLDIPEC LV ILDADKEGFLRS+TS
Sbjct: 499 YMHSDIDTLERIEIMRDLRLGVFDVLVGINLLREGLDIPECALVGILDADKEGFLRSETS 558

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARN++ KVILYAD  TKSI+ AI ET RRR  Q+ +NKKH I+ +++K++I 
Sbjct: 559 LIQTIGRAARNLDGKVILYADKETKSIKNAIKETDRRRTIQVAYNKKHKIDAKTIKKEIG 618

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           +V++ +  +D        +           K HLKSL K+M  AA NL FEEAA+IRDEI
Sbjct: 619 DVLESVYEKDYVKVGTDENIGG------NLKKHLKSLNKRMKEAATNLEFEEAAKIRDEI 672

Query: 791 KRLKSSPY 798
           ++L++S  
Sbjct: 673 RKLEASEL 680


>gi|183598214|ref|ZP_02959707.1| hypothetical protein PROSTU_01597 [Providencia stuartii ATCC 25827]
 gi|188020382|gb|EDU58422.1| hypothetical protein PROSTU_01597 [Providencia stuartii ATCC 25827]
          Length = 672

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/667 (55%), Positives = 470/667 (70%), Gaps = 7/667 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +D+ P GDQP AI QL +G+      Q LLGVTGSGKTFT+A VI    RP ++
Sbjct: 3   KVFKLYSDFQPGGDQPEAIRQLSEGLEDGLAHQTLLGVTGSGKTFTIANVIAKENRPTML 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  MAHNKTLAAQLYSEMKAFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D IVV+SVS IYG+G  +SY +M++ L  G  ++Q+ +L  L   QY 
Sbjct: 123 RLSATKALLERRDVIVVASVSAIYGLGDPDSYLKMMLHLTDGMIIDQRAILRRLADLQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ    V    
Sbjct: 183 RNDQAFTRGTFRVRGEVIDIFPAESDEYALRVELFDEEVERLSLFDPLTGQIQHRVPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  AM+ IK EL  R   L +  +LLE QR+ QR  +DLEM+   G 
Sbjct: 243 VYPKTHYVTPRERILEAMEQIKVELADRRKVLLENNKLLEEQRITQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI  MY+GD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRAPGEPPPTLFDYLPADGLLVVDESHVTIPQIGAMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPLRFEE+  L P TI VSATPG++E+E+    ++EQ++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGNYEIEKSGSEVIEQVVRPTGLLDPV 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI + +Q+  R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRIRSQKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN+N K ILY D IT S++ AI ET RRR KQ+  N++H I PQ + +KI +++     
Sbjct: 543 ARNLNGKAILYGDRITNSMEKAIKETERRRAKQIAFNEQHGIVPQGLNKKIGDILQIGHK 602

Query: 735 ---PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                   +  +  I        LS K+ +  +  L  QM+  A +L FE AA +RD+++
Sbjct: 603 VGGKSKGRNKESAKIDKREDIQLLSTKELEQRISQLEAQMYKHAQDLEFEAAANVRDQLQ 662

Query: 792 RLKSSPY 798
            L+    
Sbjct: 663 ELRERFI 669


>gi|226314863|ref|YP_002774759.1| excinuclease ABC subunit B [Brevibacillus brevis NBRC 100599]
 gi|226097813|dbj|BAH46255.1| excinuclease ABC subunit B [Brevibacillus brevis NBRC 100599]
          Length = 658

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/660 (52%), Positives = 469/660 (71%), Gaps = 2/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +++ PSGDQP AIA+L+ G+ + ++ Q LLG TG+GKT+T A+VI  + RP +
Sbjct: 1   MERFELVSEFQPSGDQPTAIAELVAGLQAGKRHQTLLGATGTGKTYTAAQVIAQVNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           VMA NK LAAQL +EFK FFP+NAVEYFVSYYDYYQPEAY+P++DT+IEK+SSIN++ID+
Sbjct: 61  VMAHNKTLAAQLCAEFKEFFPNNAVEYFVSYYDYYQPEAYIPQSDTFIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+GS E Y ++++ L++G    + E+L  LV  QY
Sbjct: 121 LRHSATSALFERRDVIIVASVSCIYGLGSPEEYRELLLSLRVGMETGRDEILHRLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI   RGTFRV GD +EIFP+   + A RV  FG++IE I+    LTG+ +   + I
Sbjct: 181 TRNDINFTRGTFRVRGDVVEIFPASESEQAIRVEFFGDEIERITSIDVLTGEILGQRDHI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYVT    +  A++ I+ EL+ RL E    G+LLEAQRLEQR  YD+EM+   G
Sbjct: 241 AIFPKSHYVTREEKMKLAVQSIEAELEERLKEFRDAGKLLEAQRLEQRTRYDIEMMMEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTG   G  P TL +Y PED ++ +DESH+T+PQ+ GMY GD  RK  L
Sbjct: 301 FCSGIENYSRHLTGLPAGHAPYTLLDYFPEDFIVMMDESHMTLPQVRGMYNGDRARKDVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+FEE+       I +SATPG +ELE     +V+Q+IRPTGL+DP
Sbjct: 361 VEHGFRLPSARDNRPLKFEEFEAKLKQAIYISATPGLYELEHSPE-MVQQVIRPTGLIDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R  + Q++D+  EI     +  R+L+T LTK+M+EDLT+YL E  I+VRY+HS++K
Sbjct: 420 TITVRPIKGQIDDLIGEIQATIAKNERVLVTTLTKKMSEDLTDYLKEIGIKVRYLHSDIK 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++I+R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 TIERMQILRSLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VI+YAD +T S+  AI ET RRR  Q+ +N++H I PQ+VK+ + +VI+   
Sbjct: 540 AARNAEGRVIMYADKMTDSMASAIRETERRRSIQMAYNEEHGITPQTVKKSVRDVIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + +     +   A    + KK   A ++ + ++M  AA NL FE AA +RD I  LK+  
Sbjct: 600 VAEEKADYLPH-ADFKKMPKKDRVAVIERMEEEMKEAARNLMFERAAELRDLILELKAEL 658


>gi|239996404|ref|ZP_04716928.1| excinuclease ABC subunit B [Alteromonas macleodii ATCC 27126]
          Length = 671

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/664 (55%), Positives = 487/664 (73%), Gaps = 6/664 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  L+ G+ S    Q LLGVTGSGKTFTMA VI+ +QRP +++A
Sbjct: 5   FELHSKYKPAGDQPKAIEALVDGLESGLAGQTLLGVTGSGKTFTMANVIKEVQRPTLILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++V+SVS IYG+G  ESY +M++ L+ GD+++Q+++L  L + QYKR 
Sbjct: 125 SATKALMERRDVVIVASVSAIYGLGDPESYMKMLLHLRQGDTMDQRDILRRLAELQYKRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD I+IFP+  E  A RV +F ++I++IS F PLTG   ++V    ++
Sbjct: 185 DLAFERGTFRVRGDVIDIFPADSEKQAVRVELFDDEIDKISLFDPLTGAVDKSVIRATVF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A+++IKEEL  R  +L++  +L+E QR+ QR  +D+EM+   G C 
Sbjct: 245 PKTHYVTPREKILNAIEHIKEELGDRKKQLQEANKLIEEQRISQRTQFDIEMMMELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTL +Y P D L+F+DESHVT+ Q+  MYRGD  RK TL E+
Sbjct: 305 GIENYSRYLSGRAPGEPPPTLLDYFPADGLMFIDESHVTVSQVGAMYRGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  + P TI VSATPG +EL++  G IVEQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEQICPQTIYVSATPGDYELKKTDGEIVEQVVRPTGLLDPVIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EI    +   R+L+T LTKRMAEDL+EYL E  ++VRY+HS++ T+E
Sbjct: 425 VRPVATQVDDVLSEIQKRVELDERVLITTLTKRMAEDLSEYLNEHGVKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 485 RIEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +VN K ILYAD+ITKS++ A+DET RRREKQ+ HN+ + I P  + + I +++D      
Sbjct: 545 HVNGKAILYADSITKSMKKAMDETERRREKQMAHNEANGITPMRLNKPITDIMDLGDSAH 604

Query: 741 AATTNISID------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A+  + +        QQ + S  +    +  L KQM   A  L FE+AA +RD+I+ L+
Sbjct: 605 PASGKVRLRKVEEKKKQQKTASATELMDQITELEKQMFEYARELEFEKAASLRDDIEALR 664

Query: 795 SSPY 798
               
Sbjct: 665 KQVV 668


>gi|205375098|ref|ZP_03227889.1| excinuclease ABC subunit B [Bacillus coahuilensis m4-4]
          Length = 658

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/659 (53%), Positives = 474/659 (71%), Gaps = 2/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +Q+ Y P GDQPAAI ++++GI   ++ Q LLG TG+GKTFTM+ VI+ + +P +
Sbjct: 1   MNVFDLQSHYSPQGDQPAAIKEIVQGIQDGKRHQTLLGATGTGKTFTMSNVIKEVNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID+
Sbjct: 61  IIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT SL ERND I+++SVSCIYG+GS E Y +++V L++G  +E+ +LL  LV  QY
Sbjct: 121 LRHSATSSLFERNDVIIIASVSCIYGLGSPEEYKELVVSLRVGMEIERNQLLRRLVDVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD +EIFP+  ++   R+  FG++I+ I E   LTG+     + +
Sbjct: 181 ERNDIDFRRGTFRVRGDVVEIFPASRDEHCIRIEFFGDEIDRIREVDALTGEIFGERDHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+VT    +  A++ I++EL+ +L  ++++G+LLEAQRLEQR  YDLEM+   G
Sbjct: 241 AIFPASHFVTREEKMRVAIENIEKELEEQLEMMKEDGKLLEAQRLEQRTRYDLEMMREMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LT R PG  P TL +Y P+D LL +DESHVT+PQI GM+ GD  RK  L
Sbjct: 301 FCSGIENYSRHLTLRPPGSTPYTLIDYFPKDFLLIIDESHVTLPQIRGMFNGDQARKQVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS MDNRPL F E+       + VSATPG +E+E     +VEQIIRPTGL+DP
Sbjct: 361 VDHGFRLPSAMDNRPLTFNEFEEKSHQLVYVSATPGPYEMEHTPQ-MVEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R    Q++D+  EI+   ++  R+L+T LTK+M+EDLT+YL E  I+V+Y+HSE+K
Sbjct: 420 TIDVRPIEGQIDDLLGEIHERIERNERVLVTTLTKKMSEDLTDYLKEIGIKVQYLHSEIK 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEIIRDLRLGK+DVLVGINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N  VI+Y D +T S++ AI ET RRR  Q E+N+KH I PQ++++ + +VI    
Sbjct: 540 AARNSNGHVIMYGDRMTDSMEKAISETARRRTIQEEYNEKHGITPQTIQKAVRDVIRATQ 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             D         +    +SK + +  ++ L  +M  AA  L+FE AA +RD I  LK+ 
Sbjct: 600 ASDGHEAPDGTKS-VTKMSKPERENLIERLEVEMKDAARALDFERAAELRDTILELKAE 657


>gi|261822206|ref|YP_003260312.1| excinuclease ABC subunit B [Pectobacterium wasabiae WPP163]
 gi|261606219|gb|ACX88705.1| excinuclease ABC, B subunit [Pectobacterium wasabiae WPP163]
          Length = 670

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/665 (55%), Positives = 470/665 (70%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + +D+ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP ++
Sbjct: 3   KVFTLHSDFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMM 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTG  ++ V    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHVLQTVPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK EL  R   L    +L+E QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILQAMEDIKVELADRKKVLLANDKLVEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+  G I++Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEIIDQVVRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI L A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRLRAVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  K ILY D IT S+  AI ET RRREKQ  +N +H I PQ + +KI +++     
Sbjct: 543 ARNLRGKAILYGDRITASMAKAISETERRREKQEAYNTEHGIVPQGINKKISDILQLGQS 602

Query: 739 EDAAT-----TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                           A+   ++ K  +  ++ L  +M   A NL FEEAA +RDE++ L
Sbjct: 603 ASKGKGRGNRKAAEPAARYELMTPKALELKIRELESKMLTHAQNLEFEEAAALRDEVQAL 662

Query: 794 KSSPY 798
           ++   
Sbjct: 663 RAQFI 667


>gi|149201065|ref|ZP_01878040.1| excinuclease ABC subunit B [Roseovarius sp. TM1035]
 gi|149145398|gb|EDM33424.1| excinuclease ABC subunit B [Roseovarius sp. TM1035]
          Length = 767

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/662 (63%), Positives = 524/662 (79%), Gaps = 1/662 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +    F + +D+ P+GDQP AIA+L +G++  E+ Q+LLG TG+GKTFTMAK+IEA Q
Sbjct: 60  KLEGGKRFLLASDFEPAGDQPTAIAELSQGLNEGERNQVLLGATGTGKTFTMAKIIEATQ 119

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INE
Sbjct: 120 RPAIILAPNKTLAAQLYGEFKGFFPENAVEYFVSYYDYYQPEAYVARSDTYIEKESQINE 179

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           QIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   L +G   +Q+ +++ LV
Sbjct: 180 QIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLTVGAQYDQRAIMADLV 239

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
            QQY+R D    RG+FRV GDS+EIFP+HLED AWR+S FG ++E I+EF PLTG+K   
Sbjct: 240 AQQYRRNDQAFQRGSFRVRGDSVEIFPAHLEDRAWRLSFFGEELEAITEFDPLTGEKTDT 299

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            + I+IYANSHYVTP+PT+  A+  IK EL+MRL +L  EG+LLEAQRLEQR  +DLEML
Sbjct: 300 FDKIRIYANSHYVTPKPTMQQAIIGIKRELRMRLDQLVNEGKLLEAQRLEQRTNFDLEML 359

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           E TG C  IENYSRYLTGR PGEPPPTLFE+IP+ +++F DESHV++PQI GMY+GD+ R
Sbjct: 360 EATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDTAIVFADESHVSVPQIGGMYKGDYRR 419

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ  G+  EQ+IRPTG
Sbjct: 420 KFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMEQTGGVFTEQVIRPTG 479

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VEIR   TQV+D+ DE+   A  G R+L+T LTKRMAEDLTEY++E+ IRVRYMH
Sbjct: 480 LLDPQVEIRPVETQVDDLLDEVRRVAADGYRVLVTTLTKRMAEDLTEYMHEQGIRVRYMH 539

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ T+ERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQ
Sbjct: 540 SDIDTIERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQ 599

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAARN   +VI+YAD IT S++ A+ ET RRR+KQ+ +N+ H I P +V++ + +++
Sbjct: 600 TIGRAARNAEGRVIMYADRITGSMERALGETNRRRDKQIAYNEAHGITPATVRKNVEDIL 659

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             +   D     ++    +  L+     A L  LR  M  AA+NL FEEAAR+RDE+KRL
Sbjct: 660 AGLYKGDVDMARVTAQVDK-PLAGANLAAVLDGLRADMRKAAENLEFEEAARLRDEVKRL 718

Query: 794 KS 795
           ++
Sbjct: 719 EA 720


>gi|78224410|ref|YP_386157.1| excinuclease ABC subunit B [Geobacter metallireducens GS-15]
 gi|78195665|gb|ABB33432.1| Excinuclease ABC subunit B [Geobacter metallireducens GS-15]
          Length = 665

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/659 (55%), Positives = 472/659 (71%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  + + +DY P GDQP AI +L +GI   ++ Q+LLGVTGSGKTFTMA VI A  RPA+
Sbjct: 1   MDRYTLVSDYTPRGDQPRAIEELSEGILRGDRHQVLLGVTGSGKTFTMANVIAATNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK  FPHNAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++ID+
Sbjct: 61  VLAPNKTLAAQLYGEFKELFPHNAVEYFVSYYDYYQPEAYIPTTDTFIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+ATRSLL R D I+V+SVSCIYGIGS   Y  M +    G+   +  LL  LV+ QY
Sbjct: 121 LRHAATRSLLTRQDVIIVASVSCIYGIGSPAEYQAMHIFFHEGEEYGRDTLLRKLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD +EIFP+H ++ A R+  FG+ +E ISE  PL G   + +   
Sbjct: 181 ERNDIDFHRGTFRVRGDIVEIFPAHEDEKALRIEFFGDAVEAISEIDPLRGVAHQRLAKC 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  SHYV  R TL  A++ I+  L+ R+    +   L+EAQRLEQR  +DLEM+E  G
Sbjct: 241 AVYPASHYVATRETLERAIEEIRVALRERIQWFRERNMLVEAQRLEQRTMFDLEMMEEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+  GR PGEPP TL +Y P+D LLFVDESH+T+ Q+ GMYRGD  RK TL
Sbjct: 301 FCQGIENYSRHFDGRAPGEPPYTLLDYFPKDFLLFVDESHITVSQVGGMYRGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL F+E+      TI VSATP  +EL+Q  G++VEQ+IRPTGL+DP
Sbjct: 361 VNYGFRLPSALDNRPLTFQEFTARLNQTIYVSATPADYELQQAGGVVVEQVIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R A  QV+D+  E+     +G R+L+T LTKRMAE+LT+Y  +  +RVRY+HS++ 
Sbjct: 421 VIEVRPAAGQVDDLLHEVRETVARGERVLVTTLTKRMAEELTDYYRDLGVRVRYLHSDID 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T++R++IIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT GR
Sbjct: 481 TIQRMQIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSARSLIQTCGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN +V +YAD +T S++  I+ET RRR  Q   N +HNI P++VK+ +  +++ I 
Sbjct: 541 AARNVNGRVTMYADAVTGSMEACIEETARRRTIQEAFNTEHNITPRTVKKGLRTILESIE 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             D  T  ++ + Q+  +   +    +K LRK+M  +A NL FE+AA +RD IK L+  
Sbjct: 601 ERDYYTIPLAAEPQEEYVPADEIPKLVKRLRKEMLASAKNLEFEKAAELRDRIKNLEER 659


>gi|84683839|ref|ZP_01011742.1| excinuclease ABC subunit B [Maritimibacter alkaliphilus HTCC2654]
 gi|84668582|gb|EAQ15049.1| excinuclease ABC subunit B [Rhodobacterales bacterium HTCC2654]
          Length = 721

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/670 (62%), Positives = 532/670 (79%), Gaps = 2/670 (0%)

Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185
               +       I  F+M T++ P+GDQP AIA+L  GI + E+ Q+LLG TG+GKT+TM
Sbjct: 11  VAPTARPKLEGGIR-FRMNTEFKPAGDQPTAIAELSDGIKNGEQDQVLLGATGTGKTYTM 69

Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           AK+IE  QRPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPR+DT+I
Sbjct: 70  AKIIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVPRSDTFI 129

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
           EKES INEQIDRMRHSATRSLLER+D I+++SVSCIYGIGS E+Y+ M   + +G+  +Q
Sbjct: 130 EKESQINEQIDRMRHSATRSLLERDDVIIIASVSCIYGIGSPETYTAMTQDITVGEEYDQ 189

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
           + ++  LV QQY+R D    RG+FRV GDS+EI+PSHLED  WR+S FG ++E I+EF  
Sbjct: 190 RAMMKDLVAQQYRRNDNAFDRGSFRVRGDSLEIWPSHLEDRGWRLSFFGEELESITEFDT 249

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           LTG K  ++E +++YANSHYVTP PTL  A++ IK+EL +RL E EK+G+LLEAQRLEQR
Sbjct: 250 LTGAKTDSLEKVRVYANSHYVTPTPTLRQAIEGIKKELTLRLAEFEKDGKLLEAQRLEQR 309

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
             +DLEMLE +G C  IENYSRYLTGR PGEPPPTLFEYIP+++++F DESHV++PQI G
Sbjct: 310 TRFDLEMLEASGFCNGIENYSRYLTGRAPGEPPPTLFEYIPDNAIVFADESHVSVPQIGG 369

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MYRGD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATPG+WELE+  G+  
Sbjct: 370 MYRGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPGNWELERTGGVFT 429

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           EQ+IRPTGL+DP VEIR    QV+D+ DE+   AQ G R L+T LTKRMAEDLTEY++E+
Sbjct: 430 EQVIRPTGLLDPQVEIRPVEMQVDDLLDEVRKVAQAGYRTLVTTLTKRMAEDLTEYMHEQ 489

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            IRVRYMHS++ T+ERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFL
Sbjct: 490 GIRVRYMHSDIDTIERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFL 549

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS+TSLIQTIGRAARN + +VI+YAD IT S++ A+ ET RRR +Q+ +N++H I P +V
Sbjct: 550 RSETSLIQTIGRAARNADGRVIMYADRITGSMERALAETDRRRARQIAYNEEHGITPATV 609

Query: 726 KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           ++ + +V+  +   D     ++    ++ +  +  +AHL+ L++ M  AA+NL FEEAAR
Sbjct: 610 RKNVEDVLAGLYAGDTDMNRVTATVDKVGI-GQNLQAHLEGLKEDMRKAAENLEFEEAAR 668

Query: 786 IRDEIKRLKS 795
           +RDE+KRL++
Sbjct: 669 LRDEVKRLEA 678


>gi|317130269|ref|YP_004096551.1| excinuclease ABC subunit B [Bacillus cellulosilyticus DSM 2522]
 gi|315475217|gb|ADU31820.1| excinuclease ABC, B subunit [Bacillus cellulosilyticus DSM 2522]
          Length = 666

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/665 (54%), Positives = 482/665 (72%), Gaps = 3/665 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +  T F++ + Y P GDQP AI +L++GI+  +K Q LLG TG+GKTFT++ VI+ ++
Sbjct: 2   SEEMTTGFELVSKYEPQGDQPQAIKELVEGINEGKKFQTLLGATGTGKTFTISNVIKEVK 61

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P +V+A NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P +DTYIEK++SIN+
Sbjct: 62  KPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYIPHSDTYIEKDASIND 121

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +ID++RHSAT SL ER D I+V+SVSCIYG+GS   YS+++V L++G   E+ +LL +LV
Sbjct: 122 EIDKLRHSATSSLFERKDVIIVASVSCIYGLGSPTEYSELVVSLRVGMEKERNQLLRNLV 181

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY+R DI   RGTFRV GD +EIFP+  ++   R+  FG++I+ I+E   LTG+ +  
Sbjct: 182 DIQYERNDINFTRGTFRVRGDVVEIFPASRDEHCLRIEFFGDEIDRITEVDALTGEILGE 241

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
                I+  SH+VT    L  AM  I++EL+  L E+ ++G+LLEAQRLEQR  YDLEM+
Sbjct: 242 RNHAAIFPASHFVTREEKLKKAMVRIEQELEETLKEMNEKGKLLEAQRLEQRTRYDLEMM 301

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           +  G C  IENYSR+LT R  G  P TL +Y PED L+ VDESHVT+PQ+ GMY GD  R
Sbjct: 302 QEMGYCSGIENYSRHLTFREAGATPYTLLDYFPEDFLIVVDESHVTLPQVRGMYNGDQAR 361

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K  L ++GFRLPS  DNRPL+FEE+      TI VSATPG +EL+ C   +VEQIIRPTG
Sbjct: 362 KGVLVDHGFRLPSAKDNRPLKFEEFEKHIHQTIFVSATPGPYELDICP-KMVEQIIRPTG 420

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP V++R    Q++D+ +EI L  ++  R+L+T LTK+M+EDLT+YL E  I VRY+H
Sbjct: 421 LLDPTVDVRPIEGQIDDLIEEIRLRKERNERVLVTTLTKKMSEDLTDYLKEVGISVRYLH 480

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++KTLERI+IIR+LRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQ
Sbjct: 481 SDIKTLERIQIIRELRLGHFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQ 540

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N  VI+YAD ITKS+ +AI ET RRRE Q E N+KH I PQ++++ + ++I
Sbjct: 541 TMGRAARNANGHVIMYADKITKSMDIAIGETKRRREIQKEFNEKHGITPQTIQKAVPQLI 600

Query: 734 DPILLEDAATTNISID--AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                 +A       +  A +  LSKK+ +  ++ +  +M  AA NLNFE AA +RD I 
Sbjct: 601 QATYAAEADEAYEVKEVAAPKQKLSKKEREKVIERMEMEMKDAAKNLNFERAAELRDVII 660

Query: 792 RLKSS 796
            LK+ 
Sbjct: 661 ELKAE 665


>gi|237653104|ref|YP_002889418.1| excinuclease ABC subunit B [Thauera sp. MZ1T]
 gi|237624351|gb|ACR01041.1| excinuclease ABC, B subunit [Thauera sp. MZ1T]
          Length = 695

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/667 (55%), Positives = 482/667 (72%), Gaps = 5/667 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + F++   + P+GDQP AI  L +G+      Q LLGVTGSGKT+TMA VI  M RPA
Sbjct: 23  EGSPFRLHQPFPPAGDQPEAIRLLCEGVEDGLMYQTLLGVTGSGKTYTMANVIARMGRPA 82

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+APNK LAAQLY+EFK F P NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I+
Sbjct: 83  LVLAPNKTLAAQLYAEFKEFLPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIE 142

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VSCIYGIG    Y  MI+ L+ G+ +  ++L+  LV  Q
Sbjct: 143 QMRLSATKSLMERRDVVIVATVSCIYGIGDPVDYHAMILHLREGERMAHRDLIQRLVAMQ 202

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R DI   RGTFRV GD I++FP+   ++A R+ MF ++IE ++ F PLTG     +  
Sbjct: 203 YTRADIDFRRGTFRVRGDVIDVFPAENAELAVRIEMFDDEIEHLTLFDPLTGHLRHKLAR 262

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IKEELK R+   ++EG+L+EAQR+EQR  +DLEML   
Sbjct: 263 FTVYPSSHYVTPRATVLQAIEAIKEELKERVAFFQREGKLVEAQRIEQRTRFDLEMLNEM 322

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+L+GR PGEPPPTL +Y+P+D+L+F+DESHV I Q+ GMY+GD  RK  
Sbjct: 323 GFCKGIENYSRHLSGRGPGEPPPTLIDYLPQDALMFIDESHVAIGQVGGMYKGDRSRKEN 382

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F+E+  L P T+ VSATP  +E E  QG +VEQ++RPTGL+D
Sbjct: 383 LVGYGFRLPSALDNRPLKFDEFERLMPQTVFVSATPAKYEEEH-QGQVVEQVVRPTGLID 441

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P VE+R A TQV+D+  EI        R+L+TVLTKRMAEDLT+YL +  IRVRY+HS++
Sbjct: 442 PMVEVRPAMTQVDDLLGEIKKRLAVNERVLVTVLTKRMAEDLTDYLADNGIRVRYLHSDI 501

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LV ILDADKEGFLRS  SLIQTIG
Sbjct: 502 DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSARSLIQTIG 561

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAAR+++   ILYAD IT S++ AI ET RRR KQ+  N+ + I P+SV ++I ++ID +
Sbjct: 562 RAARHLHGTAILYADRITDSMKAAIGETERRRNKQIAFNEANGIVPKSVTKRIKDIIDGV 621

Query: 737 LLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
              D A  + +  A + S    + +K     +K L K+M   A NL FE+AA  RDE+ +
Sbjct: 622 YDSDGAKRDAARVADKGSDYAVMDEKALARAIKRLEKEMQEHARNLEFEKAAAARDELFK 681

Query: 793 LKSSPYF 799
           L+   + 
Sbjct: 682 LRERAFG 688


>gi|317491235|ref|ZP_07949671.1| excinuclease ABC [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920782|gb|EFV42105.1| excinuclease ABC [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 672

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/667 (56%), Positives = 474/667 (71%), Gaps = 7/667 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + P GDQP AI +L  G+ +    Q LLGVTGSGKTFT+A VI  + RP +V
Sbjct: 3   KMFKLHSTFKPDGDQPEAIRRLEAGLENGLAHQTLLGVTGSGKTFTIANVIADLNRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SS+NE I++M
Sbjct: 63  MAPNKTLAAQLYGEMKQFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D IVV+SVS IYG+G  ++Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERKDVIVVASVSAIYGLGDPDAYLKMMLHLTRGMIIDQRAILRRLSELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  ED A RV +F  ++E +S F PLTGQ I+ V+   
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESEDEALRVELFDEEVERLSLFDPLTGQLIQEVQRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  AM+ IK +L  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 VYPKTHYVTPRERILQAMEEIKVDLAERRQVLLANNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRKPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP+RFEE+  L P TI VSATPG++ELE+  G IV+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGNYELEKSGGDIVDQVVRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI +      R+L+T LTKRMAEDLTEYL E  +RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRIREAINERVLVTTLTKRMAEDLTEYLDEHGVRVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N K ILY D IT S++ AI ET RRR KQ  +N +H I PQ++ +K+ +++     
Sbjct: 543 ARNLNGKAILYGDRITNSMEKAIGETERRRAKQQAYNLEHGITPQALNKKVSDILQLGEA 602

Query: 739 EDAATTN-------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
              +              A   +LS K+ +  ++ L  QM+  A NL FEEAA +RD+I+
Sbjct: 603 SSRSKGKHGRSSKAAESSAAYQALSPKQIEQRIRDLEAQMYKHAQNLEFEEAASLRDDIQ 662

Query: 792 RLKSSPY 798
            L+    
Sbjct: 663 ALRDQFI 669


>gi|89073356|ref|ZP_01159880.1| excinuclease ABC subunit B [Photobacterium sp. SKA34]
 gi|89050843|gb|EAR56317.1| excinuclease ABC subunit B [Photobacterium sp. SKA34]
          Length = 675

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/669 (53%), Positives = 482/669 (72%), Gaps = 10/669 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + ++Y PSGDQP AIAQL+ G+ S    Q LLGVTGSGKTFT+A VI    RP +++
Sbjct: 4   LFSLASEYSPSGDQPTAIAQLVDGLDSGLAHQTLLGVTGSGKTFTVANVIGQANRPTLIL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K FFP++AVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR
Sbjct: 64  APNKTLAAQLYGEMKEFFPNSAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+++SVS IYG+G  +SY +M++ ++ GD ++Q+++L  L + QY R
Sbjct: 124 LSATKALMERRDVIIIASVSAIYGLGDPDSYLKMMLHVRRGDFLDQRDILRRLAELQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIK 378
            D+   RGTFRV G+ I+IFP+  E  A R+ +F +++E IS F PLTG    R++    
Sbjct: 184 NDMAFERGTFRVRGEVIDIFPAESEKEAIRLELFDDEVECISSFDPLTGSITHRDMPRAT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  A++ IK+EL +R  +     +LLE QR+ QR  +D+EM+   G 
Sbjct: 244 IYPKTHYVTPREKILDAIEGIKKELVLRKEQFLSNNKLLEEQRISQRTQFDIEMMNELGF 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+ QI  MYRGD  RK  L 
Sbjct: 304 CSGIENYSRYLSGRAEGEPPPTLFDYLPADGLLIIDESHVTVSQIGAMYRGDRSRKENLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP++FEE+  L P TI VSATPG++E+E+    I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPMKFEEFESLAPQTIYVSATPGNYEIEKSGNDIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI++  ++G R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ T
Sbjct: 424 IEVRPVGTQVDDLLSEIHIREKKGERVLVTTLTKRMAEDLTEYLTEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  + ILY D IT S++ AI+ET RRREKQ+E+N +H I PQ + +KI ++++    
Sbjct: 544 ARNIEGRAILYGDRITGSMERAINETQRRREKQIEYNLEHGITPQKLNKKIGDILELGAS 603

Query: 739 EDAATTN---------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                +                  +LS ++ ++ ++ L KQM+  A NL FE+AA  RD+
Sbjct: 604 SSRGKSRNKAADLHKVAESKGTYSALSPQELESQIQVLEKQMYDFAQNLEFEQAAETRDK 663

Query: 790 IKRLKSSPY 798
           I +L+    
Sbjct: 664 IHKLRQQFI 672


>gi|301156422|emb|CBW15893.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Haemophilus parainfluenzae T3T1]
          Length = 678

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/671 (55%), Positives = 484/671 (72%), Gaps = 8/671 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + +D+ PSGDQP AI +L++ +      Q LLGVTGSGKTFT+A VI  + RPA
Sbjct: 6   NTKPFILHSDFKPSGDQPQAIEKLVENLEDGLAHQTLLGVTGSGKTFTIANVIATLNRPA 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI+
Sbjct: 66  MLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIE 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + Q
Sbjct: 126 QMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V  
Sbjct: 186 YTRNDQAFQRGTFRVRGEVIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGTSFGAVPR 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y  +HYVTPR  +  A++ IK EL        KE +LLE QR+ QR  +D+EM+   
Sbjct: 246 FTVYPKTHYVTPRERILDAIEKIKAELVQGREYFIKEHKLLEEQRITQRTQFDIEMMNEL 305

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK T
Sbjct: 306 GYCSGIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKET 365

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    IV+Q++RPTGL+D
Sbjct: 366 LVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGTEIVDQVVRPTGLLD 425

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EIR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++
Sbjct: 426 PQIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDI 485

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 486 DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 545

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN+N K ILYAD+ITKS++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D  
Sbjct: 546 RAARNLNGKAILYADSITKSMEKAITETNRRREKQMKYNEEHGIVPQALNKKVGELLDIG 605

Query: 737 LLEDAATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
              +    +                  S K+ +  +K L +QM+  A +L FE+AA +RD
Sbjct: 606 QGANQKAKSKQRGKTAAEPTALYNTPKSAKEFQQQIKKLEQQMYKFAQDLEFEKAAAVRD 665

Query: 789 EIKRLKSSPYF 799
           ++ +L+     
Sbjct: 666 QLHQLREQFMI 676


>gi|113970398|ref|YP_734191.1| excinuclease ABC subunit B [Shewanella sp. MR-4]
 gi|113885082|gb|ABI39134.1| Excinuclease ABC subunit B [Shewanella sp. MR-4]
          Length = 673

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/665 (54%), Positives = 480/665 (72%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ + P+GDQP AIA+L+ G+ S    Q LLGVTGSGKTFT+A VI  + RP I+
Sbjct: 4   SVFQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAQLGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD++ Q+++L  L + QY 
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYMKMLLHLRQGDTMGQRDILKRLSELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ + RGTFR  G+ I+IFP+  +    RV +F ++IE +SEF PLTGQ ++ +    
Sbjct: 184 RNDLELQRGTFRARGEVIDIFPADSDRYGIRVELFDDEIERLSEFDPLTGQIVKRIARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A + IK+EL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKTHYVTPREKILEATESIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP  +ELE+  G IVEQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNPYELEKSDGEIVEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    QV+D+  E+        R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVSIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD IT+S+  A+ ET RRREKQ  +N +H I P+ V ++I +V+D    
Sbjct: 544 ARNVNGKVILYADRITQSMAKAMGETERRREKQRAYNLEHGIVPKGVVKRITDVMDVDDG 603

Query: 739 EDAAT--------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            ++                A++      +    +  L KQMH  A NL FE+AA +RDE+
Sbjct: 604 RESEKGYRQSSLNKVAEPKAKRYQADAAQLSHDIDKLEKQMHEHARNLEFEQAAALRDEV 663

Query: 791 KRLKS 795
           KRL+ 
Sbjct: 664 KRLRE 668


>gi|241760917|ref|ZP_04759006.1| excinuclease ABC, B subunit [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374536|gb|EER63997.1| excinuclease ABC, B subunit [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 725

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/694 (61%), Positives = 527/694 (75%), Gaps = 5/694 (0%)

Query: 106 LARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH 165
           +   I++     +N   + PHR       ++    F++ +DY P+GDQP AI+ L K I 
Sbjct: 1   MTIAIRTTLDEPENHFDFVPHRPSRPEK-TEPSKPFRLVSDYEPAGDQPQAISALCKDIQ 59

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
             E+ Q+LLGVTGSGKTFTMAKVIE +QRP++++APNKILAAQLY EFK FFP NAVE+F
Sbjct: 60  KGERDQVLLGVTGSGKTFTMAKVIEKLQRPSLILAPNKILAAQLYGEFKRFFPENAVEFF 119

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
           VSYYDYYQPEAYVPRTDTYIEK+S+INE IDRMRH+ATRSLLER D I+V+SVSC+YGIG
Sbjct: 120 VSYYDYYQPEAYVPRTDTYIEKDSAINEAIDRMRHAATRSLLEREDVIIVASVSCLYGIG 179

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           SV++YS M  +L  G  V+Q+E++  LV  QYKR ++   RG+FRV GD++EIFPSH ED
Sbjct: 180 SVDTYSSMTFRLLKGQLVDQREIIRRLVALQYKRNEVAFGRGSFRVKGDTLEIFPSHYED 239

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           +AWR+S FG++IEEISEF PLTG KI  ++ IKIYANSHYVTP PTL  A   I+ EL  
Sbjct: 240 MAWRISFFGDEIEEISEFDPLTGVKIAKLDQIKIYANSHYVTPEPTLKAANNAIRRELDN 299

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           RL E + EG+LLEAQRLE+R  +DLEM+  TG+C  IENYSR+LTGR PGEPPPTLFEY+
Sbjct: 300 RLREFKAEGKLLEAQRLEERTEFDLEMMAATGACSGIENYSRFLTGRAPGEPPPTLFEYL 359

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
           P+++LLFVDESH TIPQI+GM RGD+ RK TLA+YGFRLPSC+DNRPLRFEEWN +RP T
Sbjct: 360 PDNALLFVDESHQTIPQINGMSRGDYRRKTTLADYGFRLPSCIDNRPLRFEEWNAMRPQT 419

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
           + VSATPG WELEQ  G+ VEQIIRPTGLVDP +E+R    QV+++  E    A  G R 
Sbjct: 420 VYVSATPGPWELEQTGGVFVEQIIRPTGLVDPAIEVRPIEEQVDNLIFEAKKTAAAGWRS 479

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+T LTKRMAEDLTEY+YE  ++VRYMHS+V+T+ERIE+IRDLRLG +DVL+GINLLREG
Sbjct: 480 LVTTLTKRMAEDLTEYMYEAGLKVRYMHSDVETIERIELIRDLRLGVYDVLIGINLLREG 539

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LDIPECGLVA+LDADKEGFLRS+TSLIQTIGRAARN   +VILY D IT S+  A+ ET 
Sbjct: 540 LDIPECGLVAVLDADKEGFLRSETSLIQTIGRAARNAEGRVILYGDKITGSMARAMAETE 599

Query: 706 RRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
           RRR KQ+  NK HNI P +VK ++ +++    + D++    +I+        K     + 
Sbjct: 600 RRRIKQIAWNKAHNITPATVKRQVDDIVGHFGVIDSSEAAATIENH----DPKVLARSIS 655

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
              K+M  AA NL FE+AA++RD + +LK     
Sbjct: 656 ETEKEMLEAAANLEFEKAAQLRDVLHQLKRQELG 689


>gi|120598965|ref|YP_963539.1| excinuclease ABC subunit B [Shewanella sp. W3-18-1]
 gi|120559058|gb|ABM24985.1| Excinuclease ABC subunit B [Shewanella sp. W3-18-1]
 gi|319426521|gb|ADV54595.1| excinuclease ABC, B subunit [Shewanella putrefaciens 200]
          Length = 668

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/660 (56%), Positives = 479/660 (72%), Gaps = 3/660 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ + P+GDQPAAI +L+ G+ S    Q LLGVTGSGKTFT+A VI  + RP I+
Sbjct: 4   SVFQLESQFAPAGDQPAAITKLVDGLESGLACQTLLGVTGSGKTFTIANVIAKLGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GDS+ Q+++L  L + QY 
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDSLGQRDMLKRLSELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGTFRV G+ I+IFP+  +  A RV +F ++IE +SEF PLTGQ I+ +    
Sbjct: 184 RNDIELQRGTFRVRGEVIDIFPADSDRYAIRVELFDDEIERLSEFDPLTGQIIKRIARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A + IKEEL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKTHYVTPREKILEATELIKEELRERKQYLLDNNKLIEAQRIHERVQYDVEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP  +ELE+ +G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPSLYELEKSEGEIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI        R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVATQVDDLLSEIAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD IT S+  AI ET RRREKQ  HN K+ I P+ V ++I +V+D    
Sbjct: 544 ARNVNGKVILYADRITNSMAKAIGETDRRREKQRAHNLKNGIVPKGVVKRITDVMDVDDG 603

Query: 739 EDAATTN---ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            D+           +        +    +  L K+MH  A NL FE+AA +RDE+K L+ 
Sbjct: 604 RDSKAVYGKVAEPKSHYHKADAAELSHQIDQLEKKMHEHARNLEFEQAAAMRDEVKHLRE 663


>gi|319776133|ref|YP_004138621.1| excinulease of nucleotide excision repair [Haemophilus influenzae
           F3047]
 gi|317450724|emb|CBY86944.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Haemophilus influenzae F3047]
          Length = 679

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/674 (55%), Positives = 485/674 (71%), Gaps = 9/674 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA
Sbjct: 6   NTKPFILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPA 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI+
Sbjct: 66  MLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIE 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + Q
Sbjct: 126 QMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V  
Sbjct: 186 YTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPR 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   
Sbjct: 246 FTIYPKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNEL 305

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK T
Sbjct: 306 GYCSGIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKET 365

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+    I++Q++RPTGL+D
Sbjct: 366 LVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGAYELEKSGSEIIDQVVRPTGLLD 425

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EIR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++
Sbjct: 426 PLIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDI 485

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 486 DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 545

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN+N K ILYAD+ITKS++ AI ET RRREKQ ++N++H I PQ++ +K+ E++D  
Sbjct: 546 RAARNLNGKAILYADSITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLDIG 605

Query: 737 LLEDAATTNISIDAQ---------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
              +          +             + K+ +  +K L +QM+  A +L FE+AA IR
Sbjct: 606 QGANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIR 665

Query: 788 DEIKRLKSSPYFQG 801
           D++  L+    F  
Sbjct: 666 DQLHELREQFVFDN 679


>gi|86140157|ref|ZP_01058719.1| excinuclease ABC subunit B [Roseobacter sp. MED193]
 gi|85823094|gb|EAQ43307.1| excinuclease ABC subunit B [Roseobacter sp. MED193]
          Length = 741

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/691 (60%), Positives = 537/691 (77%), Gaps = 3/691 (0%)

Query: 105 ALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI 164
           A +    +  P  ++  +             +    F M T++ P+GDQP AIA+L +G+
Sbjct: 4   AHSDKSAAKTPDQQSEHMVERDAVQRP--KLEGGKAFVMHTEFSPAGDQPTAIAELSEGV 61

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
              E+ Q+LLG TG+GKTFTMAK+I   QRPAI++APNK LAAQLY EFK FFP NAVEY
Sbjct: 62  KEGERNQVLLGATGTGKTFTMAKIIAETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEY 121

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
           FVS+YDYYQPEAYV R+DT+IEKES INEQIDRMRHSATR+LLER+D I+++SVSCIYGI
Sbjct: 122 FVSFYDYYQPEAYVARSDTFIEKESQINEQIDRMRHSATRALLERDDVIIIASVSCIYGI 181

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
           GSVE+YS M   LK+G+  +Q+++++ LV QQYKR D    RG+FRV GD++EIFP+HLE
Sbjct: 182 GSVETYSAMTQDLKVGEEYDQRQVMADLVAQQYKRNDQAFQRGSFRVRGDTLEIFPAHLE 241

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           D AW++S FG ++E I+EF PLTG++    E I++YANSHYVTP+PTLN A+  IK+ELK
Sbjct: 242 DRAWKLSFFGEELEAITEFDPLTGERTGAFEQIRVYANSHYVTPKPTLNQAVISIKQELK 301

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            RL +   EG+LLEAQRLEQR  +D+EMLE TG C  IENYSRYLTGR PGEPPPTLFE+
Sbjct: 302 HRLDQFNGEGKLLEAQRLEQRCNFDIEMLEATGHCNGIENYSRYLTGRGPGEPPPTLFEF 361

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           IP+++++F DESHV++PQI GMY+GDF RK+TLAE+GFRLPSCMDNRPL+FEEW+ +RP 
Sbjct: 362 IPDNAIVFADESHVSVPQIGGMYKGDFRRKSTLAEHGFRLPSCMDNRPLKFEEWDAMRPQ 421

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
           ++ VSATP +WE++Q  G+  EQ+IRPTGL++P +EIR  + QV+D+ DE+    + G+R
Sbjct: 422 SVFVSATPAAWEMDQAGGVFTEQVIRPTGLLEPEIEIRPVKMQVDDLLDEVRKVTENGMR 481

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+T LTKRMAEDLTEYL+E+ I+VRYMHS++ TLERIEI+RDLRLG FDVL+GINLLRE
Sbjct: 482 TLVTTLTKRMAEDLTEYLHEQGIKVRYMHSDIDTLERIEILRDLRLGAFDVLIGINLLRE 541

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLDIPECGLVAILDADKEGFLRS+TSL+QTIGRAARN   +VI+YAD IT S++ A+ ET
Sbjct: 542 GLDIPECGLVAILDADKEGFLRSETSLVQTIGRAARNAEGRVIMYADKITGSMERALGET 601

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
            RRREKQ+ +N +H I P +VK+ + +V+  +   D     ++ +  +  +     +AHL
Sbjct: 602 NRRREKQIAYNLEHGITPATVKKNVEDVLAGLYQGDVDMNRVTANIDK-PMHGANLEAHL 660

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             LR +M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 661 NGLRDEMRKAAENLEFEEAARLRDEVKRLEA 691


>gi|16273166|ref|NP_439403.1| excinuclease ABC subunit B [Haemophilus influenzae Rd KW20]
 gi|260581165|ref|ZP_05848985.1| excinuclease ABC, B subunit [Haemophilus influenzae RdAW]
 gi|1174918|sp|P45125|UVRB_HAEIN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|1574178|gb|AAC22897.1| excinuclease ABC, subunit B (uvrB) [Haemophilus influenzae Rd KW20]
 gi|260092193|gb|EEW76136.1| excinuclease ABC, B subunit [Haemophilus influenzae RdAW]
          Length = 679

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/674 (55%), Positives = 486/674 (72%), Gaps = 9/674 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA
Sbjct: 6   NTKPFILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPA 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI+
Sbjct: 66  MLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIE 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + Q
Sbjct: 126 QMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V  
Sbjct: 186 YTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPR 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   
Sbjct: 246 FTIYPKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNEL 305

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK T
Sbjct: 306 GYCSGIENYSRYLSGRNEGEPPPTLFDYMPPDAILIIDESHVTVPQIGGMYRGDRSRKET 365

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+    I++Q++RPTGL+D
Sbjct: 366 LVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGAYELEKSGSEIIDQVVRPTGLLD 425

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EIR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++
Sbjct: 426 PLIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDI 485

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 486 DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 545

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN+N K ILYAD+ITKS++ AI ET RRREKQ ++N++H I PQ++ +K+ E++D  
Sbjct: 546 RAARNLNGKAILYADSITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLDIG 605

Query: 737 LLEDAATTNISIDAQ---------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
              +          +             + K+ +  +K L +QM+  A +L FE+AA IR
Sbjct: 606 QGANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIR 665

Query: 788 DEIKRLKSSPYFQG 801
           D++ +L+    F  
Sbjct: 666 DQLHQLREQFVFDN 679


>gi|229846849|ref|ZP_04466956.1| excinuclease ABC subunit B [Haemophilus influenzae 7P49H1]
 gi|229810338|gb|EEP46057.1| excinuclease ABC subunit B [Haemophilus influenzae 7P49H1]
 gi|309972984|gb|ADO96185.1| Excinuclease ABC, subunit B [Haemophilus influenzae R2846]
          Length = 679

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/674 (55%), Positives = 486/674 (72%), Gaps = 9/674 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA
Sbjct: 6   NTKPFILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPA 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI+
Sbjct: 66  MLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIE 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + Q
Sbjct: 126 QMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V  
Sbjct: 186 YTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPR 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   
Sbjct: 246 FTIYPKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNEL 305

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK T
Sbjct: 306 GYCSGIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKET 365

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+D
Sbjct: 366 LVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLD 425

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EIR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++
Sbjct: 426 PLIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDI 485

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 486 DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 545

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN+N K ILYAD+ITKS++ AI ET RRREKQ+++N++H I PQ++ +K+ E++D  
Sbjct: 546 RAARNLNGKAILYADSITKSMEKAITETNRRREKQIKYNEEHGIVPQALNKKVGELLDIG 605

Query: 737 LLEDAATTNISIDAQ---------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
              +          +             + K+ +  +K L +QM+  A +L FE+AA IR
Sbjct: 606 QGANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIR 665

Query: 788 DEIKRLKSSPYFQG 801
           +++ +L+    F  
Sbjct: 666 NQLHQLREQFVFDN 679


>gi|74317586|ref|YP_315326.1| excinuclease ABC subunit B [Thiobacillus denitrificans ATCC 25259]
 gi|90111058|sp|Q3SIK7|UVRB_THIDA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|74057081|gb|AAZ97521.1| Excinuclease ABC, B subunit [Thiobacillus denitrificans ATCC 25259]
          Length = 675

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/664 (54%), Positives = 476/664 (71%), Gaps = 4/664 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA+L++GI      Q LLGVTGSGKT+TMA VI    RPA++
Sbjct: 8   SPFRLFQPFPPAGDQPTAIARLIEGIDDGLSYQTLLGVTGSGKTYTMANVIARAGRPALI 67

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++M
Sbjct: 68  MAPNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPARDLFIEKDSSINEHIEQM 127

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+SLLER D ++V +VS IYGIG    Y  MI+ L+  D + Q+E+++ L + QY 
Sbjct: 128 RLSATKSLLERRDTVIVCTVSAIYGIGDPSDYHSMILLLRQNDKMTQREVIARLTQMQYD 187

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG FRV GD I+IFP+   + A RV +F + +E +  F PLTGQ ++ V    
Sbjct: 188 RNDVDFKRGVFRVRGDVIDIFPAEHAETAIRVELFDDVVETLHLFDPLTGQILQKVSRFT 247

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T   A++ IK EL+ RL       +L+EAQRLEQR  +DLEM+   G 
Sbjct: 248 VFPSSHYVTPRETTLRAIEAIKVELRERLDWYYANNKLVEAQRLEQRTRFDLEMMVELGF 307

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+GR  GEPPPTL +Y+ +D+L+F+DESHVT+ Q+ GMY+GD  RK  L 
Sbjct: 308 CKGIENYSRHLSGRKAGEPPPTLIDYLAKDALMFIDESHVTVTQVGGMYKGDRSRKENLV 367

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL+FEE+  L P T+ VSATP  +E E   G +VEQ++RPTGL+DP 
Sbjct: 368 DYGFRLPSALDNRPLKFEEFEALMPQTVFVSATPAKYEAEHA-GQVVEQLVRPTGLIDPI 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R   TQV+D+  E+      G R+L+T LTKRMAEDLT+YL E  ++VRY+HS++ T
Sbjct: 427 VEVRPVTTQVDDLMSEVKKRVAVGERVLVTTLTKRMAEDLTDYLAEHGVKVRYLHSDIDT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 487 VERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           AR++N   ILYAD IT S+Q AI ET RRR KQ+  N +H I P+ V ++I ++ID +  
Sbjct: 547 ARHLNGTAILYADRITDSMQRAIGETERRRAKQIAFNTEHGITPRGVVKRIKDIIDGVYD 606

Query: 739 EDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            DA+   +      A+   + +K     +K + K+M  AA NL FE+AA +RD++K LK+
Sbjct: 607 ADASRQELKAAQTAAEYKVMDEKSLTKRVKKIEKEMQDAAKNLEFEKAAVLRDQLKELKA 666

Query: 796 SPYF 799
             + 
Sbjct: 667 LLFG 670


>gi|261492026|ref|ZP_05988601.1| excinuclease ABC subunit B [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261312309|gb|EEY13437.1| excinuclease ABC subunit B [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 672

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/667 (56%), Positives = 490/667 (73%), Gaps = 7/667 (1%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           SK    F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + R
Sbjct: 2   SKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAKLNR 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PA+V+APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQ
Sbjct: 62  PAMVLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQ 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  + Q+E+LS L +
Sbjct: 122 IEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAMIGQREILSRLAE 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    R TFRV GD I+I+P+  ++VA RV +F ++IE +S F PLTG+ +  V
Sbjct: 182 LQYTRNDQAFQRSTFRVRGDVIDIYPAESDEVALRVELFDDEIENLSLFDPLTGRSLGKV 241

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               IY  +HYVTPR  +  A++ IK EL  R     KE +LLE QR+ QR  +D+EM+ 
Sbjct: 242 PRYTIYPKTHYVTPRERILEAIEQIKVELADRRTYFIKENKLLEEQRIAQRTQFDIEMMN 301

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR  GE PPTLF+Y+P D +L +DESHVT+PQI GMYRGD  RK
Sbjct: 302 ELGYCSGIENYSRYLSGRKEGEAPPTLFDYMPADGILVIDESHVTVPQIGGMYRGDRARK 361

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL
Sbjct: 362 ETLVQYGFRLPSALDNRPLRFEEFERLSPQTIYVSATPGAYELEK-NPDVVDQVVRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+R   TQV+D+  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS
Sbjct: 421 LDPIIEVRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 481 DIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN+N K ILY D IT S+Q AI ET RRREKQ+++N++H I PQ++ +K+ E++D
Sbjct: 541 IGRAARNLNGKAILYGDRITNSMQKAITETERRREKQMKYNEEHGITPQALNKKVGELLD 600

Query: 735 ------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                 P   + A     +        S+K+ +  LK+L +QM   A +L FE+AA +RD
Sbjct: 601 IGQSVKPKRGKQAVKKAENSATDYKPKSRKELEKELKTLEQQMRDFAKDLEFEKAAAVRD 660

Query: 789 EIKRLKS 795
           ++++LK+
Sbjct: 661 KLQQLKA 667


>gi|319896940|ref|YP_004135135.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Haemophilus influenzae F3031]
 gi|329123296|ref|ZP_08251863.1| excision endonuclease subunit UvrB [Haemophilus aegyptius ATCC
           11116]
 gi|317432444|emb|CBY80799.1| UvrABC system protein B [Haemophilus influenzae F3031]
 gi|327471420|gb|EGF16869.1| excision endonuclease subunit UvrB [Haemophilus aegyptius ATCC
           11116]
          Length = 679

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/674 (55%), Positives = 486/674 (72%), Gaps = 9/674 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA
Sbjct: 6   NTKPFILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPA 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI+
Sbjct: 66  MLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIE 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + Q
Sbjct: 126 QMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V  
Sbjct: 186 YTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPR 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   
Sbjct: 246 FTIYPKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNEL 305

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK T
Sbjct: 306 GYCSGIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKET 365

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+    I++Q++RPTGL+D
Sbjct: 366 LVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGAYELEKSGSEIIDQVVRPTGLLD 425

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EIR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++
Sbjct: 426 PLIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDI 485

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 486 DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 545

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN+N K ILYAD+ITKS++ AI ET RRREKQ ++N++H I PQ++ +K+ E++D  
Sbjct: 546 RAARNLNGKAILYADSITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLDIG 605

Query: 737 LLEDAATTNISIDAQ---------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
              +          +             + K+ +  +K L +QM+  A +L FE+AA IR
Sbjct: 606 QGANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIR 665

Query: 788 DEIKRLKSSPYFQG 801
           D++ +L+    F  
Sbjct: 666 DQLHQLREQFVFDN 679


>gi|56551258|ref|YP_162097.1| excinuclease ABC subunit B [Zymomonas mobilis subsp. mobilis ZM4]
 gi|60415994|sp|Q56998|UVRB_ZYMMO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56542832|gb|AAV88986.1| excinuclease ABC, B subunit [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 740

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/694 (61%), Positives = 527/694 (75%), Gaps = 5/694 (0%)

Query: 106 LARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH 165
           +   I++     +N   + PHR       ++    F++ +DY P+GDQP AI+ L K I 
Sbjct: 1   MTIAIRTTLDEPENHSDFVPHRPSRPEK-TEPSKPFRLVSDYEPAGDQPQAISALCKDIQ 59

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
             E+ Q+LLGVTGSGKTFTMAKVIE +QRP++++APNKILAAQLY EFK FFP NAVE+F
Sbjct: 60  KGERDQVLLGVTGSGKTFTMAKVIEKLQRPSLILAPNKILAAQLYGEFKRFFPENAVEFF 119

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
           VSYYDYYQPEAYVPRTDTYIEK+S+INE IDRMRH+ATRSLLER D I+V+SVSC+YGIG
Sbjct: 120 VSYYDYYQPEAYVPRTDTYIEKDSAINEAIDRMRHAATRSLLEREDVIIVASVSCLYGIG 179

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           SV++YS M  +L  G  V+Q+E++  LV  QYKR ++   RG+FRV GD++EIFPSH ED
Sbjct: 180 SVDTYSSMTFRLLKGQLVDQREIIRRLVALQYKRNEVAFGRGSFRVKGDTLEIFPSHYED 239

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           +AWR+S FG++IEEISEF PLTG KI  ++ IKIYANSHYVTP PTL  A   I+ EL  
Sbjct: 240 MAWRISFFGDEIEEISEFDPLTGVKIAKLDQIKIYANSHYVTPEPTLKAANNAIRRELDN 299

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           RL E + EG+LLEAQRLE+R  +DLEM+  TG+C  IENYSR+LTGR PGEPPPTLFEY+
Sbjct: 300 RLREFKAEGKLLEAQRLEERTEFDLEMMAATGACSGIENYSRFLTGRAPGEPPPTLFEYL 359

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
           P+++LLFVDESH TIPQI+GM RGD+ RK TLA+YGFRLPSC+DNRPLRFEEWN +RP T
Sbjct: 360 PDNALLFVDESHQTIPQINGMSRGDYRRKTTLADYGFRLPSCIDNRPLRFEEWNAMRPQT 419

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
           + VSATPG WELEQ  G+ VEQIIRPTGLVDP +E+R    QV+++  E    A  G R 
Sbjct: 420 VYVSATPGPWELEQTGGVFVEQIIRPTGLVDPAIEVRPIEEQVDNLIFEAKKTAAAGWRS 479

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+T LTKRMAEDLTEY+YE  ++VRYMHS+V+T+ERIE+IRDLRLG +DVL+GINLLREG
Sbjct: 480 LVTTLTKRMAEDLTEYMYEAGLKVRYMHSDVETIERIELIRDLRLGVYDVLIGINLLREG 539

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LDIPECGLVA+LDADKEGFLRS+TSLIQTIGRAARN   +VILY D IT S+  A+ ET 
Sbjct: 540 LDIPECGLVAVLDADKEGFLRSETSLIQTIGRAARNAEGRVILYGDKITGSMARAMAETE 599

Query: 706 RRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
           RRR KQ+  NK HNI P +VK ++ +++    + +++    +I+        K     + 
Sbjct: 600 RRRIKQIAWNKAHNITPATVKRQVDDIVGHFGVVNSSEAAATIENH----DPKVLARSIS 655

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
              K+M  AA NL FE+AA++RD + +LK     
Sbjct: 656 ETEKEMLEAAANLEFEKAAQLRDVLHQLKRQELG 689


>gi|253687898|ref|YP_003017088.1| excinuclease ABC, B subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259710330|sp|C6DDU0|UVRB_PECCP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|251754476|gb|ACT12552.1| excinuclease ABC, B subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 670

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/665 (55%), Positives = 472/665 (70%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + +D+ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP ++
Sbjct: 3   KVFTLNSDFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMM 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTG  ++ V    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHVLQTVPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK EL  R   L    +L+E QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILQAMEDIKVELADRRKVLLANDKLVEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+  G +++Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAVNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DP 735
           ARN+  K ILY D IT S+  AI ET RRREKQ  +N +H I PQ + +KI +++    P
Sbjct: 543 ARNLRGKAILYGDKITPSMAKAIGETERRREKQEAYNTEHGIVPQGLNKKISDILQLGQP 602

Query: 736 ILLEDAATTNISID--AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                      + +  A+   ++ K  +  ++ L  +M   A NL FEEAA +RDE++ L
Sbjct: 603 TNRGKGRGNRKAAEPAARYELMTPKALELKIRELESKMLTHAQNLEFEEAAALRDELQAL 662

Query: 794 KSSPY 798
           ++   
Sbjct: 663 RAQFI 667


>gi|299535981|ref|ZP_07049300.1| excinuclease ABC subunit B [Lysinibacillus fusiformis ZC1]
 gi|298728586|gb|EFI69142.1| excinuclease ABC subunit B [Lysinibacillus fusiformis ZC1]
          Length = 659

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/657 (54%), Positives = 475/657 (72%), Gaps = 1/657 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +Q  Y P+GDQP AIA+L++G+ + ++ Q LLG TG+GKTFT++ VI+ +++P +
Sbjct: 1   MQTFDLQAPYQPNGDQPQAIAELVEGVKAGKRHQTLLGATGTGKTFTISNVIQQVKKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MA NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++ID+
Sbjct: 61  IMAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+++SVSCIYG+GS E Y +M+V ++ G  +E+ +LL  LV  QY
Sbjct: 121 LRHSATSALFEREDVIIIASVSCIYGLGSPEEYREMVVSIRTGMEIERNQLLRKLVDVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ + + E +
Sbjct: 181 ERNDVSFTRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEILSDREHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+VT    +  A++ I++EL+ RL  L  E +LLEAQRLEQR  YDLEM+   G
Sbjct: 241 AIFPASHFVTREEKMRKAIENIEKELEERLALLRAEDKLLEAQRLEQRTRYDLEMMREMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LT R  G  P TL +Y PED LL VDESHVT+PQ+ GMY GD  RK  L
Sbjct: 301 FCSGIENYSRHLTLREAGATPYTLLDYFPEDFLLVVDESHVTLPQVRGMYNGDQARKGVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPLRFEE+       I VSATPG +ELE     +VEQIIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLRFEEYENRVHQAIYVSATPGPYELEHTPE-MVEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R    Q++++ DEI     +  R+L+T LTK+M+EDL+ YL E  ++V Y+HSE+K
Sbjct: 420 LIDVRPIEGQIDNLIDEIQDRIARDERVLVTTLTKKMSEDLSAYLKEMGLKVEYLHSEIK 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEIIR+LR G +DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TLERIEIIRELRKGTYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N  VI+YAD +T S++ AIDET RRR  Q+ +N++H I PQ++ +KI +VI    
Sbjct: 540 AARNANGHVIMYADHVTDSMKKAIDETKRRRALQMAYNEEHGITPQTIIKKIPDVIRATQ 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + +   + ++   +   L+K + +  + SL  +M  AA  L+FE AA +RD I  LK
Sbjct: 600 VAEEEESYVTKATKGKKLTKAEREQLVASLEVEMKEAAKALDFERAAELRDTIFELK 656


>gi|296330276|ref|ZP_06872757.1| excinuclease ABC subunit B [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305676119|ref|YP_003867791.1| excinuclease ABC subunit B [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152544|gb|EFG93412.1| excinuclease ABC subunit B [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305414363|gb|ADM39482.1| excinuclease ABC subunit B [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 661

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/657 (54%), Positives = 476/657 (72%), Gaps = 2/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L+KGI   +K Q LLG TG+GKTFT++ +I+ + +P +V+A
Sbjct: 5   FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y +M+V L+    +E+ ELL  LV  QY R 
Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYREMVVSLRPDMEIERNELLRKLVDIQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ + + E I I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGDREHIAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ +L  + + G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PG  P TL +Y P+D ++ VDESHVTIPQ+ GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       + VSATPG +E+E    +I EQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTDEMI-EQIIRPTGLLDPLID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIQARVERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILLE 739
           N   +VI+YAD +TKS+++AI+ET RRRE+Q   N++H I PQ++ ++I +VI   +  E
Sbjct: 544 NAEGRVIMYADKMTKSMEIAINETKRRREQQERFNEEHGITPQTINKEIRDVIRATVAAE 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D A        +   ++KK+ +  ++ +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 DKAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE 660


>gi|126737418|ref|ZP_01753153.1| excinuclease ABC subunit B [Roseobacter sp. SK209-2-6]
 gi|126722003|gb|EBA18706.1| excinuclease ABC subunit B [Roseobacter sp. SK209-2-6]
          Length = 732

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/678 (62%), Positives = 529/678 (78%), Gaps = 2/678 (0%)

Query: 118 KNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVT 177
           K+    T                F M T + P+GDQP AIA+L +G+   E+ Q+LLG T
Sbjct: 8   KSEPQMTQRAPQHRPKLEGG-KRFVMNTTFDPAGDQPTAIAELSQGVLEGERNQVLLGAT 66

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G+GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP N+VEYFVS+YDYYQPEAY
Sbjct: 67  GTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPENSVEYFVSFYDYYQPEAY 126

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
           VPR+DTYIEKES INEQIDRMRHSATR+LLER+D I+++SVSCIYGIGSVE+YS M   L
Sbjct: 127 VPRSDTYIEKESQINEQIDRMRHSATRALLERDDVIIIASVSCIYGIGSVETYSAMTQDL 186

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           K G+  +Q+++++ LV QQYKR D    RG+FRV GD++EIFP+HLED AW++S FG ++
Sbjct: 187 KAGEMYDQRQIMADLVAQQYKRNDQAFQRGSFRVRGDTLEIFPAHLEDRAWKLSFFGEEL 246

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           E I+EF PLTG++    E I+IYANSHYVTP+PTLN A+  IK+EL+ RL  L  +G+LL
Sbjct: 247 EAITEFDPLTGERTGTFEQIRIYANSHYVTPKPTLNQAVVSIKQELRQRLDNLVGDGKLL 306

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESH 477
           EAQRLEQR  +D+EMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESH
Sbjct: 307 EAQRLEQRTNFDIEMLEATGHCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESH 366

Query: 478 VTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537
           V++PQI GMY+GD  RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WEL
Sbjct: 367 VSVPQIGGMYKGDHRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPSGWEL 426

Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           +Q  G+  EQ+IRPTGL+DP VEIR  + QV+D+ DEI   +  G R L+T LTKRMAED
Sbjct: 427 DQSGGVFAEQVIRPTGLLDPEVEIRPVKMQVDDLLDEIRKVSADGFRTLVTTLTKRMAED 486

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTEYL+E+ I+VRYMHS++ TLERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAIL
Sbjct: 487 LTEYLHEQGIKVRYMHSDIDTLERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAIL 546

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           DADKEGFLRS+TSLIQTIGRAARN + +VI+YAD IT S++ A+ ET RRREKQ+ +N +
Sbjct: 547 DADKEGFLRSETSLIQTIGRAARNADGRVIMYADKITGSMERALGETNRRREKQIAYNLE 606

Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
           H I P++VK+ + +V+  +   D     ++    +  +     +AHL  LR +M  AA+N
Sbjct: 607 HGITPETVKKNVEDVLAGLYEGDVDMNRVTATVDK-PMHGANLEAHLAGLRDEMRKAAEN 665

Query: 778 LNFEEAARIRDEIKRLKS 795
           L FEEAAR+RDE+KRL++
Sbjct: 666 LEFEEAARLRDEVKRLEA 683


>gi|317047396|ref|YP_004115044.1| excinuclease ABC subunit B [Pantoea sp. At-9b]
 gi|316949013|gb|ADU68488.1| excinuclease ABC, B subunit [Pantoea sp. At-9b]
          Length = 673

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/663 (55%), Positives = 478/663 (72%), Gaps = 8/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVE+FVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEFFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  V    +Y
Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVVSVVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  +M+ IK+EL +R   L +  +LLE QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQSMEEIKKELVVRRQVLLENNKLLEEQRITQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPILE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI        R+L+T LTKRMAEDLTEYL E   +VRY+HS++ T+E
Sbjct: 425 VRPVTTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           N+N K ILYAD IT S+  AI+ET RRREKQ  +N+ + I PQ + +KI ++++      
Sbjct: 545 NINGKAILYADKITNSMARAIEETERRREKQQRYNEVNGIVPQGLNKKITDILELGKNVV 604

Query: 735 --PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                 + A  +    +A  L+L+ +  +  +  L  QM   A NL FEEAAR+RD++  
Sbjct: 605 KTRGKGKTATRSAAETEANYLALTPQAMQKKIHELEGQMQQHAQNLEFEEAARVRDQLHE 664

Query: 793 LKS 795
           L+ 
Sbjct: 665 LRE 667


>gi|126652449|ref|ZP_01724621.1| excinuclease ABC subunit B [Bacillus sp. B14905]
 gi|126590720|gb|EAZ84835.1| excinuclease ABC subunit B [Bacillus sp. B14905]
          Length = 659

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/657 (54%), Positives = 475/657 (72%), Gaps = 1/657 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +Q  Y P+GDQP AIA+L++G+ + ++ Q LLG TG+GKTFT++ VI+ +++P +
Sbjct: 1   MQTFDLQAPYQPNGDQPQAIAELVEGVKAGKRHQTLLGATGTGKTFTISNVIQQVKKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MA NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++ID+
Sbjct: 61  IMAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER+D I+++SVSCIYG+GS E Y +M+V ++ G  +E+ +LL  LV  QY
Sbjct: 121 LRHSATSALFERDDVIIIASVSCIYGLGSPEEYREMVVSIRTGMEIERNQLLRKLVDVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ + + E +
Sbjct: 181 ERNDVSFTRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEILSDREHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+VT    +  A++ I++EL+ RL  L  E +LLEAQRLEQR  YDLEM+   G
Sbjct: 241 AIFPASHFVTREEKMRKAIENIEKELEDRLALLRAEDKLLEAQRLEQRTRYDLEMMREMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LT R  G  P TL +Y PED LL VDESHVT+PQ+ GMY GD  RK  L
Sbjct: 301 FCSGIENYSRHLTLREAGATPYTLLDYFPEDFLLVVDESHVTLPQVRGMYNGDQARKGVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPLRFEE+       I VSATPG +ELE    +I +QIIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLRFEEYENRVHQAIYVSATPGPYELEHTPEMI-QQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R    Q++++ DEI        R+L+T LTK+M+EDLT YL E  ++V Y+HSE+K
Sbjct: 420 LIDVRPIEGQIDNLIDEIQGRIACDERVLVTTLTKKMSEDLTAYLKEMGLKVEYLHSEIK 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEIIR+LR G +DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TLERIEIIRELRKGTYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N  VI+YAD +T S++ A+DET RRRE Q+ +N++H I PQ++ +KI EVI    
Sbjct: 540 AARNANGHVIMYADHVTDSMKKALDETKRRRELQMAYNEEHGITPQTISKKIPEVIRATQ 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + +   + ++   +   L+K +    L SL  +M  AA  L+FE AA +RD I  LK
Sbjct: 600 VAEEEESYVTKATKGKKLTKAERDQLLASLEIEMKEAAKALDFERAAELRDTIFELK 656


>gi|261343466|ref|ZP_05971111.1| excinuclease ABC subunit B [Providencia rustigianii DSM 4541]
 gi|282568614|gb|EFB74149.1| excinuclease ABC subunit B [Providencia rustigianii DSM 4541]
          Length = 672

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/665 (55%), Positives = 472/665 (70%), Gaps = 7/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P GDQP AI +L++G+      Q LLGVTGSGKTFT+A VI    RP ++MA
Sbjct: 5   FKLYSDFQPGGDQPEAIRKLIEGLEDGLAHQTLLGVTGSGKTFTIANVIAQENRPTMLMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR 
Sbjct: 65  HNKTLAAQLYSEMKGFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  +SY +M++ L  G  ++Q+ +L  L   QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDSYLKMMLHLTDGMIIDQRSILRRLADLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F +++E +S F PLTG     +    +Y
Sbjct: 185 DQAFTRGTFRVRGEVIDIFPAESDEYALRVELFDDEVERLSLFDPLTGAIQHRIPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L +  +L+E QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILEAMEQIKIELADRRRVLLENNKLIEEQRVAQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI  MY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRAPGEPPPTLFDYLPADGLLVVDESHVTIPQIGAMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+    P TI VSATPG++ELE+    ++EQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFEAAAPQTIYVSATPGNYELEKSGHEVIEQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI L  ++  R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVTTQVDDLLSEIRLRVEKQERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S+  AI ET RRR KQ+E+N+ H I PQ +K+K+ +++       
Sbjct: 545 NLNGKAILYGDRITNSMAKAIAETERRRAKQIEYNEAHGITPQGLKKKVGDILQIGHKVG 604

Query: 741 AATTNISIDAQQL-------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                    + +        S+S K+ +  +  L  QM+  A +L FE AAR+RDE++ L
Sbjct: 605 GKGKGRGKGSNKEDLALNIQSMSTKELEQRISQLEAQMYKHAQDLEFEAAARVRDELQTL 664

Query: 794 KSSPY 798
           ++   
Sbjct: 665 RNQFI 669


>gi|149914354|ref|ZP_01902885.1| excinuclease ABC subunit B [Roseobacter sp. AzwK-3b]
 gi|149811873|gb|EDM71706.1| excinuclease ABC subunit B [Roseobacter sp. AzwK-3b]
          Length = 732

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/672 (62%), Positives = 534/672 (79%), Gaps = 1/672 (0%)

Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183
           +P    ++ +  +    F+M T++ P+GDQP AIA+L  G+ S E+ Q+LLG TG+GKT+
Sbjct: 15  SPAPDIAVRDKLEGGRRFEMVTEFQPAGDQPTAIAELSSGVLSGERNQVLLGATGTGKTY 74

Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243
           TMAKVIE  QRPAI++APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYV R+DT
Sbjct: 75  TMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPNNAVEYFVSYYDYYQPEAYVARSDT 134

Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303
           YIEKES INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   LK+G   
Sbjct: 135 YIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLKVGTEY 194

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           +Q+++++ LV QQY+R D G  RG+FRV GDS+EI+P+HL+D AW++S FG ++E I+EF
Sbjct: 195 DQRKVMADLVAQQYRRNDAGFQRGSFRVRGDSLEIWPAHLDDRAWKLSFFGEELEAITEF 254

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
            PLTG+K  + E I++YANSHYVTP+PT+  AM  I++EL+ RL +L  EG+LLEAQRLE
Sbjct: 255 DPLTGEKTDSFEQIRVYANSHYVTPKPTMQQAMIGIRKELRQRLDQLVAEGKLLEAQRLE 314

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
           QR ++DLEMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+ +++F DESHV++PQI
Sbjct: 315 QRTSFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDTAIVFADESHVSVPQI 374

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
            GMY+GD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WE+EQ  G+
Sbjct: 375 GGMYKGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAKWEIEQTGGV 434

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
             EQ+IRPTGL+DP +EIR    QV+D+ DE+   +  G R L T LTKRMAEDLTEYL+
Sbjct: 435 FTEQVIRPTGLLDPQIEIRPVEMQVDDLLDEVRRVSAAGYRTLCTTLTKRMAEDLTEYLH 494

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           E+ IRVRYMHS++ T+ERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEG
Sbjct: 495 EQGIRVRYMHSDIDTIERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEG 554

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           FLRS+TSLIQTIGRAARN + +VI+YAD IT S+Q A+DET RRR KQ+ +N++H I P 
Sbjct: 555 FLRSETSLIQTIGRAARNADGRVIMYADRITGSMQRALDETDRRRAKQIAYNEEHGITPA 614

Query: 724 SVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
           +V++ + +++  +   D     ++    +  +     +AHL  LR +M  AA+NL FEEA
Sbjct: 615 TVRKNVEDILAGLYKGDVDMNRVTATVDK-PMVGSNLQAHLDGLRTEMRKAAENLEFEEA 673

Query: 784 ARIRDEIKRLKS 795
           AR+RDE+KRL++
Sbjct: 674 ARLRDEVKRLEA 685


>gi|254362088|ref|ZP_04978211.1| excinuclease ABC subunit B [Mannheimia haemolytica PHL213]
 gi|153093646|gb|EDN74607.1| excinuclease ABC subunit B [Mannheimia haemolytica PHL213]
          Length = 672

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/667 (56%), Positives = 488/667 (73%), Gaps = 7/667 (1%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           SK    F + + + PSGDQP+AIA+L +G++     Q LLGVTGSGKTFT+A VI  + R
Sbjct: 2   SKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAKLNR 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PA+V+APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQ
Sbjct: 62  PAMVLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQ 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G  + Q+E+LS L +
Sbjct: 122 IEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGAMIGQREILSRLAE 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    R TFRV GD I+I+P+  ++VA RV +F ++IE +S F PLTG  +  V
Sbjct: 182 LQYTRNDQAFQRSTFRVRGDVIDIYPAESDEVALRVELFDDEIENLSLFDPLTGHSLGKV 241

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               IY  +HYVTPR  +  A++ IK EL  R     KE +LLE QR+ QR  +D+EM+ 
Sbjct: 242 PRYTIYPKTHYVTPRERILEAIEQIKVELADRRTYFIKENKLLEEQRIAQRTQFDIEMMN 301

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR  GE PPTLF+Y+P D +L +DESHVT+PQI GMYRGD  RK
Sbjct: 302 ELGYCSGIENYSRYLSGRKEGEAPPTLFDYMPADGILVIDESHVTVPQIGGMYRGDRARK 361

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL
Sbjct: 362 ETLVQYGFRLPSALDNRPLRFEEFERLSPQTIYVSATPGAYELEK-NPDVVDQVVRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+R   TQV+D+  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS
Sbjct: 421 LDPIIEVRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 481 DIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN+N K ILY D IT S+Q AI ET RRREKQ+++N++H I PQ++ +K+ E++D
Sbjct: 541 IGRAARNLNGKAILYGDRITNSMQKAITETERRREKQMKYNEEHGITPQALNKKVGELLD 600

Query: 735 ------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                 P   + A     +        S+K+ +  LK+L +QM   A +L FE+AA +RD
Sbjct: 601 IGQSDKPKRGKQAVKKAENSATDYKPKSRKELEKELKTLEQQMRDFAKDLEFEKAAAVRD 660

Query: 789 EIKRLKS 795
           +++ LK+
Sbjct: 661 KLQHLKA 667


>gi|170768976|ref|ZP_02903429.1| excinuclease ABC, B subunit [Escherichia albertii TW07627]
 gi|170122048|gb|EDS90979.1| excinuclease ABC, B subunit [Escherichia albertii TW07627]
          Length = 673

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/665 (56%), Positives = 477/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  +SY +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDSYLKMMLHLTVGMIIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +DVA RV +F  ++E +S F PLTGQ I  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDVALRVELFDEEVERLSLFDPLTGQIISTIARYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELADRRKVLLANNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAISETERRREKQQRYNEEHGITPQGLNKKVVDILALGQS 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L  QM   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRAIVEPDNVPMDMSPKALQQKIHELEAQMMKHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|217973442|ref|YP_002358193.1| excinuclease ABC subunit B [Shewanella baltica OS223]
 gi|217498577|gb|ACK46770.1| excinuclease ABC, B subunit [Shewanella baltica OS223]
          Length = 668

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/659 (55%), Positives = 480/659 (72%), Gaps = 3/659 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ + P+GDQP AIA+L+ G+ +    Q LLGVTGSGKTFT+A VI+ + RP I+
Sbjct: 4   SVFQLESQFAPAGDQPTAIAKLVDGLEAGLACQTLLGVTGSGKTFTIANVIQKLGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QYK
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDVMGQRDILIRLSELQYK 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGT+RV G+ I++FP+  E  A RV +F ++IE +SEF PLTG  I+ +    
Sbjct: 184 RNDIELQRGTYRVRGEVIDVFPADSERNAIRVELFDDEIERLSEFDPLTGHIIKRIARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A ++IKEEL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKTHYVTPREKIIAATEFIKEELRERKQYLLDNNKLIEAQRIHERVQYDVEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP  +ELE+ +G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPSVYELEKSEGEIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI        R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVGTQVDDLLSEIAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD IT S+  AI ET RRRE+Q  HN KH I P+ V ++I +V+D    
Sbjct: 544 ARNVNGKVILYADRITNSMAKAIGETDRRRERQRAHNLKHGITPKGVVKRITDVMDVDDG 603

Query: 739 EDAATTN---ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            D+           +        +    +  L K+MH  A NL FE+AA +RDE+K L+
Sbjct: 604 RDSKAVYGKVAEPKSHYHKADATELSHQIDQLEKKMHEHARNLEFEQAAAMRDEVKHLR 662


>gi|126090180|ref|YP_001041661.1| excinuclease ABC subunit B [Shewanella baltica OS155]
 gi|126174473|ref|YP_001050622.1| excinuclease ABC subunit B [Shewanella baltica OS155]
 gi|153000637|ref|YP_001366318.1| excinuclease ABC subunit B [Shewanella baltica OS185]
 gi|304408666|ref|ZP_07390287.1| excinuclease ABC, B subunit [Shewanella baltica OS183]
 gi|307305495|ref|ZP_07585243.1| excinuclease ABC, B subunit [Shewanella baltica BA175]
 gi|125997678|gb|ABN61753.1| Excinuclease ABC subunit B [Shewanella baltica OS155]
 gi|125999836|gb|ABN63906.1| hypothetical protein Sbal_4543 [Shewanella baltica OS155]
 gi|151365255|gb|ABS08255.1| excinuclease ABC, B subunit [Shewanella baltica OS185]
 gi|304352487|gb|EFM16884.1| excinuclease ABC, B subunit [Shewanella baltica OS183]
 gi|306911798|gb|EFN42223.1| excinuclease ABC, B subunit [Shewanella baltica BA175]
          Length = 668

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/659 (55%), Positives = 480/659 (72%), Gaps = 3/659 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ + P+GDQP AIA+L+ G+ +    Q LLGVTGSGKTFT+A VI+ + RP I+
Sbjct: 4   SVFQLESQFAPAGDQPTAIAKLVDGLEAGLACQTLLGVTGSGKTFTIANVIQKLGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QYK
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDVMGQRDILIRLSELQYK 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGT+RV G+ I++FP+  E  A RV +F ++IE +SEF PLTG  I+ +    
Sbjct: 184 RNDIELQRGTYRVRGEVIDVFPADSERNAIRVELFDDEIERLSEFDPLTGHIIKRIARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A ++IKEEL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKTHYVTPREKIIAATEFIKEELRERKQYLLDNNKLIEAQRIHERVQYDVEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP  +ELE+ +G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPSVYELEKSEGEIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI        R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVGTQVDDLLSEIAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD IT S+  AI ET RRRE+Q  HN KH I P+ V ++I +V+D    
Sbjct: 544 ARNVNGKVILYADRITNSMAKAIGETDRRRERQRAHNLKHGITPKGVVKRITDVMDVDDG 603

Query: 739 EDAATTN---ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            D+           +        +    +  L K+MH  A NL FE+AA +RDE+K L+
Sbjct: 604 RDSKAVYGKVAEPKSHYHKADATELSHQIDQLEKKMHEHARNLEFEQAAAMRDEVKHLR 662


>gi|258510424|ref|YP_003183858.1| excinuclease ABC, B subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477150|gb|ACV57469.1| excinuclease ABC, B subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 663

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/653 (55%), Positives = 474/653 (72%), Gaps = 1/653 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ TD  P GDQP AI  L+ G++S  + Q LLGVTGSGKTFTMA +I  + RP +V+A
Sbjct: 8   FELVTDMKPQGDQPQAIEALVDGVYSGLRHQTLLGVTGSGKTFTMANIIAEVNRPTLVIA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF+ FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK++ IN++ID++RH
Sbjct: 68  HNKTLAAQLAAEFRAFFPNNAVEYFVSYYDYYQPEAYIPSTDTYIEKDAKINDEIDKLRH 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT ++LERND +VV+SVS IYG+G+ E Y   ++ L++G  +++ ++L  LV  QY R 
Sbjct: 128 SATAAILERNDVLVVASVSAIYGLGNPEEYRHHVLSLRVGAVMDRNQMLRKLVDMQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++ A RV +FG++I+ ISE   LTG+ +       ++
Sbjct: 188 DINFTRGTFRVRGDVVEIFPASRDENAIRVELFGDEIDRISEINVLTGEVVARRSHFSVF 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT R  L  A++ I+ EL+ RL EL  +G+LLEAQRLEQR  YD+EM+   G C 
Sbjct: 248 PASHYVTSRERLERAIERIRAELEERLAELRAQGKLLEAQRLEQRTHYDIEMMLEMGFCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  GEPP TL +Y P   L F+DESHVTIPQ+ GMY GD  RK TL E+
Sbjct: 308 GIENYSRHLEGREAGEPPYTLLDYFPPGFLTFIDESHVTIPQLRGMYNGDRSRKLTLIEH 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+       I VSATPG +E +  Q  IVEQIIRPTGLVDP + 
Sbjct: 368 GFRLPSAADNRPLKFEEFERAVGQCIYVSATPGPYEQQH-QQRIVEQIIRPTGLVDPEIH 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  I+VRY+HS++KT+E
Sbjct: 427 VRPVKGQIDDLVGEIRERIRRDERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSDIKTIE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ I+RDLR G FDVLVGINLLREGLD+PE  LVAILD DKEGFLRS TSLIQTIGRAAR
Sbjct: 487 RMVILRDLRRGVFDVLVGINLLREGLDLPEVSLVAILDTDKEGFLRSHTSLIQTIGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADTIT+S+++AI+ET RRR+KQ+ +N++H I PQ+V++ + +VI+   + +
Sbjct: 547 NANGTVIMYADTITESMRIAIEETERRRQKQIAYNREHGITPQTVRKAVRDVIESTKVAE 606

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +    +++  +   LS ++ K  +  L ++M  AA  L FE AA +RD I  L
Sbjct: 607 SEEDYVAVAEKAQKLSGRERKELIAKLEQEMKAAAKALKFERAAELRDMIMEL 659


>gi|229164103|ref|ZP_04292039.1| UvrABC system protein B [Bacillus cereus R309803]
 gi|228619339|gb|EEK76229.1| UvrABC system protein B [Bacillus cereus R309803]
          Length = 658

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL++RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEVRLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +NK+H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNKEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +   ++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 EPETYEATPTKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|146292950|ref|YP_001183374.1| excinuclease ABC subunit B [Shewanella putrefaciens CN-32]
 gi|145564640|gb|ABP75575.1| Excinuclease ABC subunit B [Shewanella putrefaciens CN-32]
          Length = 668

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/660 (56%), Positives = 480/660 (72%), Gaps = 3/660 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ + P+GDQPAAI +L+ G+ S    Q LLGVTGSGKTFT+A VI  + RP I+
Sbjct: 4   SVFQLESQFAPAGDQPAAITKLVDGLESGLACQTLLGVTGSGKTFTIANVIAKLGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GDS+ Q+++L  L + QY 
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDSLGQRDMLQRLSELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGTFRV G+ I+IFP+  +  A RV +F ++IE +SEF PLTGQ I+ +    
Sbjct: 184 RNDIELQRGTFRVRGEVIDIFPADSDRYAIRVELFDDEIERLSEFDPLTGQIIKRIARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A + IKEEL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKTHYVTPREKILEATELIKEELRERKQYLLDNNKLIEAQRIHERVQYDVEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP  +ELE+ +G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPSLYELEKSEGEIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI        R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVATQVDDLLSEIAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD IT S+  A++ET RRREKQ  HN K+ I P+ V ++I +V+D    
Sbjct: 544 ARNVNGKVILYADRITNSMAKAMEETDRRREKQRAHNLKNGIVPKGVVKRITDVMDVDDG 603

Query: 739 EDAATTN---ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            D+           +        +    +  L K+MH  A NL FE+AA +RDE+K L+ 
Sbjct: 604 RDSKAVYGKVAEPKSHYHKADAAELSHQIDQLEKKMHEHARNLEFEQAAAMRDEVKHLRE 663


>gi|260439329|ref|ZP_05793145.1| excinuclease ABC subunit B [Butyrivibrio crossotus DSM 2876]
 gi|292808339|gb|EFF67544.1| excinuclease ABC subunit B [Butyrivibrio crossotus DSM 2876]
          Length = 661

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/664 (54%), Positives = 469/664 (70%), Gaps = 3/664 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + ++Y P+GDQP AI +L+KG  + ++ Q LLGVTGSGKTFTMA VIE + RP +
Sbjct: 1   MDRFILHSEYEPTGDQPEAIKELVKGFEAGDQFQTLLGVTGSGKTFTMANVIEKLNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID+
Sbjct: 61  VIAHNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+GS   Y  M+V L+ G   ++ +++  L+  QY
Sbjct: 121 LRHSATAALSERRDVIIVASVSCIYGLGSPIDYKSMVVSLRPGMERDRDDIIRQLIDMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD +EIFP+  + +A RV  FG++I+ I E   LTG+    ++  
Sbjct: 181 VRNDMDFKRGTFRVRGDVLEIFPAASDKIAVRVEFFGDEIDRILEIDTLTGEIKSELKHT 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV P+  L  A + I+ ELK ++   + E +LLEAQR+ +R  +D+EM+  TG
Sbjct: 241 AIFPASHYVVPKEKLLIAAENIRAELKEQVDYFKSEDKLLEAQRISERTNFDVEMMLETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L GR PG  P TL +Y PED L+ VDESH+TIPQI GMY GD  RK TL
Sbjct: 301 FCSGIENYSRHLEGRAPGTMPCTLMDYFPEDFLIIVDESHITIPQIRGMYFGDRSRKTTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL FEE+       + VSATP  +E E  +   VEQIIRPTGL+DP
Sbjct: 361 VDYGFRLPSALDNRPLNFEEFESKINQMMFVSATPSVYEAEH-ELNRVEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    Q++D+  E+N       ++L+T LTKRMAEDLT YL E  +RVRY+HS++ 
Sbjct: 420 EISVRPVTGQIDDLLSEVNKETAGKNKVLITTLTKRMAEDLTIYLKENGVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRD+R+  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERAEIIRDMRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN + +VI+YAD +T S++ AIDET RRR+ Q E+N+ H I P ++K+ + ++I    
Sbjct: 540 AARNADGRVIMYADNMTDSMRKAIDETERRRKIQQEYNEAHGITPTTIKKAVRDLIAISK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             +     I  D +  S+S K+ +  +K L K+MH AA +LNFEEAA IRD+I  ++ + 
Sbjct: 600 AANDKGDKIKKDIE--SMSDKELEKLIKELNKKMHRAAADLNFEEAALIRDQITEIRKTM 657

Query: 798 YFQG 801
              G
Sbjct: 658 DNNG 661


>gi|89069290|ref|ZP_01156653.1| UvrABC system protein B [Oceanicola granulosus HTCC2516]
 gi|89045166|gb|EAR51234.1| UvrABC system protein B [Oceanicola granulosus HTCC2516]
          Length = 731

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/671 (63%), Positives = 524/671 (78%), Gaps = 2/671 (0%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFT 184
           P R        +    F M TD+  +GDQP AI +L  G+ S E+ Q+LLG TG+GKTFT
Sbjct: 16  PAREAKRPEKLEGGKRFVMHTDFEAAGDQPTAIGELTDGVLSGERDQVLLGATGTGKTFT 75

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           MA++IE  QRPAI++APNK LAAQLY EFK+FFP NAVEYFVS+YDYYQPEAYVPR+DTY
Sbjct: 76  MARIIEETQRPAIILAPNKTLAAQLYGEFKSFFPDNAVEYFVSFYDYYQPEAYVPRSDTY 135

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304
           IEKES IN+QIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   L +G   +
Sbjct: 136 IEKESMINDQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLVVGREYD 195

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           Q+++++ L+ QQYKR D    RGTFRV GD++EIFP+HLED AW++S FG ++E I+EF 
Sbjct: 196 QRQVMADLITQQYKRNDQAFQRGTFRVRGDTLEIFPAHLEDRAWKLSFFGEELESITEFD 255

Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
           PLTG++    + I++YANSHYVTP+PTL  A+  IK+EL+ RL +L  EG+LLEAQRLEQ
Sbjct: 256 PLTGERTGTFDKIRVYANSHYVTPKPTLQQAVIEIKKELRARLDQLVGEGKLLEAQRLEQ 315

Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484
           R  +D+EM+E TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI 
Sbjct: 316 RTNFDIEMIEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIG 375

Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544
           GMYRGD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WELEQ  G+ 
Sbjct: 376 GMYRGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPADWELEQAGGVF 435

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
            EQ+IRPTGL+DP VEIR   TQV+D+ DEI    QQG R L TVLTKRMAEDLTEYL+E
Sbjct: 436 TEQVIRPTGLLDPQVEIRPVETQVDDLLDEIRRVTQQGFRTLCTVLTKRMAEDLTEYLHE 495

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           + I+VRYMHS++ TLERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGF
Sbjct: 496 QGIKVRYMHSDIDTLERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGF 555

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
           LRS+TSLIQTIGRAARN   +VI+YAD IT S++ AI ET RRREKQ+ +N+ H I P +
Sbjct: 556 LRSETSLIQTIGRAARNAEGRVIMYADRITGSMERAIGETERRREKQIAYNEAHGITPAT 615

Query: 725 VKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           VK+ + +V+  +   D     ++        +    +A L  LR  M  AA+NL FEEAA
Sbjct: 616 VKKNVEDVLAGLYKGDTDMARVTAKIDTP--TGANLQAVLDGLRADMRKAAENLEFEEAA 673

Query: 785 RIRDEIKRLKS 795
           R+RDE+KRL++
Sbjct: 674 RLRDEVKRLET 684


>gi|295676090|ref|YP_003604614.1| excinuclease ABC, B subunit [Burkholderia sp. CCGE1002]
 gi|295435933|gb|ADG15103.1| excinuclease ABC, B subunit [Burkholderia sp. CCGE1002]
          Length = 697

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/671 (54%), Positives = 482/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + F++   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 22  EGSPFKLYQPYPPAGDQPTAIETLVEGVGDGLAFQTLLGVTGSGKTFTMANTIARLGRPA 81

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 82  IVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 141

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 142 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDRLGQRDVIARLIAMQ 201

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RG+FRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 202 YSRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKIPR 261

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK EL+ RL     EG+L+EAQRLEQR  +DLEML+  
Sbjct: 262 FTVYPSSHYVTPRDTVLRAVETIKAELRDRLEFFYSEGKLVEAQRLEQRTRFDLEMLQEL 321

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+++ +DESHV I Q++GMY GD  RK  
Sbjct: 322 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAIMMLDESHVLIGQLNGMYNGDRARKEN 381

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G + EQ++RPTGLVD
Sbjct: 382 LVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-KKTSGQVAEQLVRPTGLVD 440

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R AR+QV+DV  EIN   + G R+L+T LTKRMAE LTE+L +  I+VRY+HS++
Sbjct: 441 PEIEVRPARSQVDDVLGEINERIKAGDRVLVTTLTKRMAEQLTEFLADHGIKVRYLHSDI 500

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 501 DTVERVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 560

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYAD IT S++ AIDET RRR KQ+  N  H I P+ V ++I ++ID +
Sbjct: 561 RAARNVNGKAILYADNITDSMRRAIDETERRRAKQIAFNAAHGITPRGVVKRIRDIIDGV 620

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA+ RD++  L
Sbjct: 621 YNVDEARAELKEQQTRAKFEDMSEKQLAKEIKRLEKQMMEHAKNLEFEKAAQTRDQLALL 680

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 681 RQRVFGANVGD 691


>gi|170718533|ref|YP_001783742.1| excinuclease ABC subunit B [Haemophilus somnus 2336]
 gi|168826662|gb|ACA32033.1| excinuclease ABC, B subunit [Haemophilus somnus 2336]
          Length = 677

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/667 (57%), Positives = 485/667 (72%), Gaps = 8/667 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + +D+ P+GDQP AIA+L + ++     Q LLGVTGSGKTFT+A VI  + RPA+V
Sbjct: 7   KPFILHSDFQPAGDQPQAIAKLAENLNDGLAHQTLLGVTGSGKTFTIANVIAKLNRPAMV 66

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++M
Sbjct: 67  LAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQM 126

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+S LER D IVV+SVS IYG+G  +SY +M++ L+ G  V+Q+++L+ L + QY 
Sbjct: 127 RLSATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQHGAIVDQRQILAKLAELQYT 186

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     +    
Sbjct: 187 RNDQVFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGANFGAIPRYT 246

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  A++ IK EL+ R   L    RL+E QRL QR  +D+EM+   G 
Sbjct: 247 IYPKTHYVTPRERILEAIEKIKLELQARREYLLANNRLVEEQRLTQRTQFDIEMMNELGY 306

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR+ GEPPPTLF+YIP D LL +DESHVT+PQI GMYRGD  RK TL 
Sbjct: 307 CSGIENYSRYLSGRDEGEPPPTLFDYIPSDGLLIIDESHVTVPQIGGMYRGDRSRKETLV 366

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+DP 
Sbjct: 367 EYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGDEIIDQVVRPTGLLDPE 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VEIR    QV+D+  E    A+Q  R+L+T LTKRMAEDLT+YL E  IRVRY+HS++ T
Sbjct: 427 VEIRPVAIQVDDLLSEARKRAEQNERVLVTTLTKRMAEDLTDYLEEHGIRVRYLHSDIDT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 487 VERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN+N K ILYAD+ITKS+Q AIDET RRREKQ+++N +  + PQ++ +K+ E++D    
Sbjct: 547 ARNLNGKAILYADSITKSMQKAIDETHRRREKQMKYNAEKGVVPQALNKKVGELLDIGQG 606

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                     A T   S    Q   S K  +  +K L +QM+  A +L FE+AA IRD++
Sbjct: 607 AITKSKTKARAKTVAESSALYQKINSPKDYQQQVKKLEQQMYKFAQDLEFEKAAAIRDQL 666

Query: 791 KRLKSSP 797
           + LK   
Sbjct: 667 QELKERF 673


>gi|210608828|ref|ZP_03288024.1| hypothetical protein CLONEX_00203 [Clostridium nexile DSM 1787]
 gi|210152894|gb|EEA83900.1| hypothetical protein CLONEX_00203 [Clostridium nexile DSM 1787]
          Length = 662

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/660 (53%), Positives = 477/660 (72%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI QL+KG     + Q LLG TGSGKTFTMA VI  + RP +
Sbjct: 1   MEHFELVSEYTPTGDQPQAIDQLVKGFKEGNQCQTLLGATGSGKTFTMANVIAQLNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLY EFK FFP+N+VE F+SYYDYYQPEAYVP +DTYI K+SSIN++ID+
Sbjct: 61  VIAHNKTLAAQLYGEFKEFFPNNSVELFMSYYDYYQPEAYVPSSDTYIAKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E+++ L++ QY
Sbjct: 121 LRHSATAALSERRDVIIVASVSCIYGLGSPIDYQEMVISLRPGMIKDRDEVVAKLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD +EIFP+  ED A RV  FG+++E I+E   LTG+    ++ +
Sbjct: 181 DRNDMDFKRGTFRVRGDVLEIFPAVSEDYAIRVEFFGDEVERITEIDVLTGEIKNALKHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV  +  L+ A K I+EEL+ R+   + E +LLEAQR+ +R  +D+EM+  TG
Sbjct: 241 AIFPASHYVVSKEALDRATKAIEEELEERVRYFKGEDKLLEAQRIAERTNFDIEMMRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTG  PG+PP TL +Y P+D L+ +DESH TIPQI GMY GD  RK+TL
Sbjct: 301 FCSGIENYSRHLTGLAPGQPPHTLIDYFPDDFLIMIDESHKTIPQIGGMYMGDQSRKSTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL FEE+       + VSATPG +E E+ + + V+QIIRPTGL+DP
Sbjct: 361 VDYGFRLPSAKDNRPLNFEEFESKVNQMLFVSATPGEYE-EKNELLRVDQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++D+  E+N    +  +IL+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ 
Sbjct: 420 EVEVRPVEGQIDDLVGEVNKEIAKKNKILITTLTKRMAEDLTDYMRELGIRVKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN +  VI+YAD +T+S++ AI ET RRR+ Q+ +N++H I PQ+VK+ + ++I   +
Sbjct: 540 AARNADGHVIMYADHVTESMEKAIQETERRRKIQMAYNEEHGITPQTVKKSVRDLI--SI 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            +  A   + ++    S+S+K+ +  +K + KQM  AA  LNFE AA +RD++  LK   
Sbjct: 598 SKKVAAEELRLEKDPESMSEKELEKLIKDVTKQMKKAAAELNFEAAAELRDKLIELKKQL 657


>gi|299821908|ref|ZP_07053796.1| excision endonuclease subunit UvrB [Listeria grayi DSM 20601]
 gi|299817573|gb|EFI84809.1| excision endonuclease subunit UvrB [Listeria grayi DSM 20601]
          Length = 657

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/656 (54%), Positives = 467/656 (71%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L+ G++   K Q LLG TG+GKTFT++ VI+ + +P +VMA
Sbjct: 5   FELVSKYSPQGDQPKAIEKLVAGLNKGIKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y  M+V L+ G  + + +LL  LV  QY R 
Sbjct: 125 SATASLFERRDVIIIASVSCIYGLGSPEEYGAMLVSLRTGMEIGRDQLLRKLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ I + E + I+
Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEIIGDREHVSIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT R  L  AM  IK ELK RL EL    +LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 245 PASHFVTRRDILEKAMVNIKTELKDRLKELRDNDKLLEAQRLEQRTNYDLEMMEEMGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG  P TL +Y P+D  + +DESHVT+PQI  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLALRAPGSTPYTLLDYFPDDFQMVIDESHVTMPQIRAMYNGDQARKQVLIDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +ELE+    ++EQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEKHVNQIMYVSATPGPYELEK-NPDVIEQIIRPTGLLDPVIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ DEI     +  R+L+T LTK+M+EDLT+YL E  ++V+Y+HSEVKTLE
Sbjct: 424 VRPIPGQIDDLMDEIAERVTKNERVLITTLTKKMSEDLTDYLKEAGVKVQYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG +DVLVGINLLREG+D+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGVYDVLVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD  T S+  AI+ET RRRE Q+ +N++H I PQ++K+ I   I   +  +
Sbjct: 544 NENGKVIMYADRYTDSMTNAINETQRRREIQIAYNEEHGITPQTIKKDIRGAITATVAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                ++       ++K++  A ++ + ++M  AA  L+FE AA +RD +  +K+ 
Sbjct: 604 EEEAELT---DISKMTKEERAAFIEEMEREMKQAAKALDFERAAELRDALLEIKAE 656


>gi|83953447|ref|ZP_00962169.1| UvrABC system protein B [Sulfitobacter sp. NAS-14.1]
 gi|83842415|gb|EAP81583.1| UvrABC system protein B [Sulfitobacter sp. NAS-14.1]
          Length = 738

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/690 (61%), Positives = 535/690 (77%), Gaps = 1/690 (0%)

Query: 106 LARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH 165
           +A       P  K+  +  P  +       +    F++ T++ P+GDQP AI +L +G+ 
Sbjct: 1   MAYAHSDSLPERKDAYLANPAPNVRERPKLEGGKKFKLATEFEPAGDQPTAIKELSEGVR 60

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           S E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP NAVEYF
Sbjct: 61  SGERDQVLLGATGTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYF 120

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
           VSYYDYYQPEAYV R+DT+IEKES INEQIDRMRHSATR+LLER+D I+++SVSCIYGIG
Sbjct: 121 VSYYDYYQPEAYVARSDTFIEKESQINEQIDRMRHSATRALLERDDVIIIASVSCIYGIG 180

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           SVE+Y  M   LK G++ +Q+++++ L+ Q YKR D    RGTFRV GDS+EIFP+HLED
Sbjct: 181 SVETYGAMTQDLKTGNNYDQRQVIADLIAQAYKRNDAAFQRGTFRVRGDSLEIFPAHLED 240

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
            AWR+S FG ++E I+EF PLTG+K  + + I++YANSHYVTP+PT+N A+  IK+EL+M
Sbjct: 241 RAWRLSFFGEELESITEFDPLTGEKTGSFDQIRVYANSHYVTPKPTMNQAVIGIKKELRM 300

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           RL +L  EG+LLEAQRLEQR  +D+EMLE TG C  IENYSRYLTGR PGEPPPTLFE+I
Sbjct: 301 RLDQLVAEGKLLEAQRLEQRCNFDIEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFI 360

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
           P+++++F DESHV++PQI GMY+GD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP +
Sbjct: 361 PDNAIVFADESHVSVPQIGGMYKGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQS 420

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
           + VSATP +WE+EQ  G+  EQIIRPTGL+DP +EIR    QV+D+ DE+   A  G R 
Sbjct: 421 VFVSATPAAWEIEQSGGVFTEQIIRPTGLIDPKIEIRPVEMQVDDLLDEVRKVAADGYRT 480

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L TVLTKRMAEDLTEY++E+ IRVRYMHS++ T+ERIEI+RDLRLG FDVL+GINLLREG
Sbjct: 481 LCTVLTKRMAEDLTEYMHEQGIRVRYMHSDIDTIERIEILRDLRLGAFDVLIGINLLREG 540

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARN   +VI+YAD IT S++ AI ET 
Sbjct: 541 LDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNAEGRVIMYADRITGSMERAIGETD 600

Query: 706 RRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
           RRR KQL +N++H I P +VK+ + +++  +   D   + ++       L+    +  L 
Sbjct: 601 RRRAKQLAYNEEHGITPTTVKKNVDDILAGLYKGDVDMSRVTAKID-NPLAGGNLQTVLD 659

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            LR  M  AA+NL FEEAAR+RDE+KRL+S
Sbjct: 660 GLRTDMRKAAENLEFEEAARLRDEVKRLES 689


>gi|332993965|gb|AEF04020.1| excinuclease ABC subunit B [Alteromonas sp. SN2]
          Length = 671

 Score =  850 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/664 (55%), Positives = 487/664 (73%), Gaps = 6/664 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI  L+ G+ S    Q LLGVTGSGKTFTMA VI  +QRP +++A
Sbjct: 5   FELHSSYKPAGDQPAAIETLVDGLESGLAAQTLLGVTGSGKTFTMANVISEVQRPTLILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR 
Sbjct: 65  HNKTLAAQLYGEMKDFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++V+SVS IYG+G  ESY +M++ L+ GD+++Q+++L  L + QYKR 
Sbjct: 125 SATKALMERRDVVIVASVSAIYGLGDPESYMKMLLHLRQGDTMDQRDILRRLAELQYKRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD I+IFP+  E  A RV +F ++I++IS F PLTG   ++V    ++
Sbjct: 185 DLAFERGTFRVRGDVIDIFPADSEKQAVRVELFDDEIDKISLFDPLTGAVDKSVVRATVF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A+++IK ELK R  +L +  +L+E QR+ QR  +D+EM+   G C 
Sbjct: 245 PKTHYVTPREKILDAIEHIKGELKSRKAQLLEINKLIEEQRISQRTQFDIEMMMELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTL +Y P D L+F+DESHVT+ QI  MY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRAPGEPPPTLLDYFPADGLMFIDESHVTVSQIGAMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  + P T+ VSATPG +EL++  G IVEQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEQICPQTVYVSATPGEYELKKTHGDIVEQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EI+       R+L+T LTKRMAEDL+EYL E  ++VRY+HS++ T+E
Sbjct: 425 VRPVATQVDDVLSEIHKRVALDERVLITTLTKRMAEDLSEYLNEHGVKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+GKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 485 RIEIIRDLRIGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++N + ILY D ITKS++ A+DET RRREKQ+EHNK +NI P  + + I +++D      
Sbjct: 545 HINGRAILYGDKITKSMKKAMDETERRREKQIEHNKANNITPMRLNKPITDIMDLGEGAH 604

Query: 741 AATTNISID------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A+  + +        Q+ + S  +    +  L KQM   A  L FE+AA +RD+++ L+
Sbjct: 605 PASGKVRLRKVEEKKKQKKAASATELMDQIAELEKQMFEYARELEFEKAASLRDDVEALR 664

Query: 795 SSPY 798
               
Sbjct: 665 KQVV 668


>gi|332654162|ref|ZP_08419906.1| excinuclease ABC subunit B [Ruminococcaceae bacterium D16]
 gi|332517248|gb|EGJ46853.1| excinuclease ABC subunit B [Ruminococcaceae bacterium D16]
          Length = 656

 Score =  850 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/659 (55%), Positives = 479/659 (72%), Gaps = 3/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y PSGDQP AI  L +GI      Q LLGVTGSGKTFTMAK+IE +QRP +
Sbjct: 1   MPKFEVVSEYTPSGDQPQAIEALSQGIEMGLDEQTLLGVTGSGKTFTMAKIIEQVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +EFK FFP+NAVEYFVSYYDYYQPEAY+P TDT+IEK+S+INE+IDR
Sbjct: 61  VLAHNKTLAAQLCAEFKEFFPNNAVEYFVSYYDYYQPEAYIPHTDTFIEKDSAINEEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLLER D IVVSSVSCIYG+G  E +++M+V L++GD +E+ E L  LV  +Y
Sbjct: 121 LRLSATASLLERRDVIVVSSVSCIYGLGEPEDFAKMMVSLRVGDILERDEFLKRLVSIRY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   R  FRV GD++E++P++ +D A RV  FG++I+ ISE   +TG  IR +  I
Sbjct: 181 ERNDIAFERNMFRVRGDTVEVWPAYWKDTAIRVEFFGDEIDRISEINVVTGSPIRKLSHI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  +HYVTP+  ++ A++ I +EL+ R+   EKEG+L+EAQR++QR  YD+EM++  G
Sbjct: 241 PIWPATHYVTPKEKMDAAVQEIYKELEERVAYFEKEGKLIEAQRIKQRTMYDVEMMQELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR + GR  G PP TL +Y P+D +LF+DESHVT+PQ+  MY GD  RK TL
Sbjct: 301 YCSGIENYSRVIEGRPVGSPPHTLLDYFPKDFVLFIDESHVTLPQVRAMYNGDRARKNTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLP   DNRPL+FEE+       I VSATPG +E  +  G IVEQ+IRPTGL+DP
Sbjct: 361 VDYGFRLPCAYDNRPLKFEEFEKRLNQVIYVSATPGEYERTRS-GQIVEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    Q++D+  EIN    +  R+L+T LTK+MAEDLT+YL    I+VRYMH +V 
Sbjct: 420 KIEVRPVEGQIDDLIGEINARTARKERVLVTTLTKKMAEDLTDYLQNNGIKVRYMHHDVD 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TMERMEIIRDLRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    V++YADTIT S++ A+DET RRR+KQ  +NK+H I P++V + + ++++   
Sbjct: 540 AARNAEGMVVMYADTITPSMRRAMDETERRRQKQDAYNKEHGIVPKTVIKSVRDLLEISA 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             D    + +   +  ++SK++  A +  L K M  AA  L FE AA +RD+I  L+  
Sbjct: 600 PAD--EPSQTRQGRVKAMSKQEKAAEIARLEKAMKEAAKMLEFELAATLRDQIIELRGQ 656


>gi|209520642|ref|ZP_03269395.1| excinuclease ABC, B subunit [Burkholderia sp. H160]
 gi|209498925|gb|EDZ99027.1| excinuclease ABC, B subunit [Burkholderia sp. H160]
          Length = 697

 Score =  850 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/671 (54%), Positives = 482/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + F++   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 22  EGSPFKLYQPYPPAGDQPTAIETLVEGVGDGLAFQTLLGVTGSGKTFTMANTIARLGRPA 81

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 82  IVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 141

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 142 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDRLGQRDVITRLIAMQ 201

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RG+FRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 202 YSRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVEALQLFDPLTGRVRQKIPR 261

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK EL+ RL     +G+L+EAQRLEQR  +DLEML+  
Sbjct: 262 FTVYPSSHYVTPRDTVLRAVETIKAELRDRLEFFYSDGKLVEAQRLEQRTRFDLEMLQEL 321

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+++ +DESHV I Q++GMY GD  RK  
Sbjct: 322 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAIMMLDESHVLIGQLNGMYNGDRARKEN 381

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G + EQ++RPTGLVD
Sbjct: 382 LVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-KKTSGQVAEQLVRPTGLVD 440

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R AR+QV+DV  EIN   + G R+L+T LTKRMAE LTE+L +  I+VRY+HS++
Sbjct: 441 PEIEVRPARSQVDDVLGEINERIKAGDRVLVTTLTKRMAEQLTEFLADHGIKVRYLHSDI 500

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 501 DTVERVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 560

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILY D IT S++ AIDET RRR KQ+  N  H I P+ V ++I ++ID +
Sbjct: 561 RAARNVNGKAILYGDNITDSMRRAIDETERRRAKQIAFNAAHGITPRGVVKRIRDIIDGV 620

Query: 737 LLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +    + A+   +S+K+    +K L KQM   A NL FE+AA+ RD++  L
Sbjct: 621 YNVDEARAELKEQQVRAKFEDMSEKQLAKEIKRLEKQMMEHAKNLEFEKAAQTRDQLALL 680

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 681 RQRVFGANVGD 691


>gi|298507282|gb|ADI86005.1| excinuclease ABC, B subunit [Geobacter sulfurreducens KN400]
          Length = 664

 Score =  850 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/658 (55%), Positives = 475/658 (72%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +DY P GDQP AIA+L +GI   ++ Q+LLGVTGSGKTFTMA VI AM RPA+
Sbjct: 1   MERFRLASDYEPRGDQPRAIAELSEGIVRGDRDQVLLGVTGSGKTFTMANVIAAMNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EF+  FP NAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++ID+
Sbjct: 61  VLAPNKTLAAQLYGEFRELFPDNAVEYFVSYYDYYQPEAYIPTTDTFIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+ATRSLL R D I+V+SVSCIYGIGS   Y  M +    GD   + ELL  LV  QY
Sbjct: 121 LRHAATRSLLTRRDVIIVASVSCIYGIGSPAEYQAMHIFFHQGDEYGRDELLRKLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RGTFRV GD +EIFP+H  + A+R+  FG+ ++ ISE  PL G  ++ +   
Sbjct: 181 ERNDLDFHRGTFRVRGDIVEIFPAHEGERAYRIEFFGDTVDAISEIDPLRGVVVQRLTKC 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  SHYV  R TL+ AM+ I+ +L+ RL    +   L+EAQRLEQR  +DLEM+E  G
Sbjct: 241 AVYPASHYVATRETLDRAMEEIRTDLRERLQWFRERNMLVEAQRLEQRTMFDLEMMEEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSRY  GR PGEPP TL +Y P D +LFVDESH+T+ Q+ GMYRGD  RK TL
Sbjct: 301 FCQGIENYSRYFDGRTPGEPPYTLLDYFPRDFILFVDESHITVSQVGGMYRGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLP+ +DNRPL F E+      ++ VSATP  +EL+Q  G++VEQ+IRPTGL+DP
Sbjct: 361 VNYGFRLPAALDNRPLTFGEFTERLNQSVYVSATPADYELQQSGGVVVEQVIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R A  QV+D+  E+     +G R+L+T LTKRMAEDLT+Y  +  +RVRY+HS++ 
Sbjct: 421 VIEVRPATEQVDDLLHEVRETTARGERVLVTTLTKRMAEDLTDYYRDLGVRVRYLHSDID 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T++R++IIRDLR+G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT GR
Sbjct: 481 TIQRMQIIRDLRMGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSARSLIQTCGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN +VI+YADT+T S+Q  +DET RRR  Q   N +H I PQ+VK+ +  +++ I 
Sbjct: 541 AARNVNGRVIMYADTVTGSMQSCLDETARRRALQEAFNTEHGITPQTVKKGLRTILESIE 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             D  T     + ++  +S  +    +K LRK+M  AA  L FE AA +R++IK+L+ 
Sbjct: 601 ERDYYTVAAVAETREEYISADEIPKRVKKLRKEMLDAAKKLEFERAADLREQIKKLEE 658


>gi|153005353|ref|YP_001379678.1| excinuclease ABC subunit B [Anaeromyxobacter sp. Fw109-5]
 gi|152028926|gb|ABS26694.1| excinuclease ABC, B subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 729

 Score =  850 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/655 (55%), Positives = 476/655 (72%), Gaps = 1/655 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +++++ P+GDQP AI +L  G+   ++ Q+LLGVTGSGKTFT+A V+  ++RP +V+
Sbjct: 32  PFDLRSEFQPTGDQPRAIGELTAGLRRGDRHQVLLGVTGSGKTFTVANVVAELRRPTLVI 91

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQLY EFK  FP  AV YFVSYYDYYQPEAYVP TDTYIEK+SSIN++IDRMR
Sbjct: 92  AHNKTLAAQLYGEFKELFPSAAVHYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDRMR 151

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT +LL RND ++V+SVSCIYG+G+ E+Y  ++ Q++ G    +   + SL+  QY+R
Sbjct: 152 HAATHALLTRNDVLIVASVSCIYGLGTAEAYFGLLQQIERGQEFVRDRFIRSLIDIQYER 211

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+   RGTFRV GD+IE+FP + ED A R+  FG+ +E I EF PL G  +  V+ + I
Sbjct: 212 NDVDFHRGTFRVRGDTIEVFPPYEEDRAVRIEFFGDVVESIHEFDPLRGVTLAEVDKVAI 271

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           + NSHYV+   T   A+  ++EEL+ RL EL+   +L+EAQRLEQR  +DLEMLE  G C
Sbjct: 272 FPNSHYVSAPETRKRAVDGVREELRERLGELKAANKLVEAQRLEQRTMFDLEMLEQMGFC 331

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+GR  G+PPP L +Y P+D L+ VDESH TIPQI  MYRGD  RK TL E
Sbjct: 332 PGIENYSRWLSGRKAGDPPPCLLDYFPKDFLVVVDESHQTIPQIGAMYRGDRSRKETLVE 391

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEE+  L    I VSATP  +EL++ QG++VEQIIRPTGL DP V
Sbjct: 392 FGFRLPSALDNRPLRFEEFERLVHQGIYVSATPAEYELQKAQGVVVEQIIRPTGLTDPEV 451

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   +QV+D+  E+   A+ G R+L+T LTKRMAEDLTEY  +  +R RY+HS+++TL
Sbjct: 452 EVRPVGSQVDDLLGEVRKRAEAGERVLVTTLTKRMAEDLTEYFTDVGVRCRYLHSDIETL 511

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  +IRDLR G+FDVL+GINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQTIGRAA
Sbjct: 512 ERSALIRDLRRGEFDVLIGINLLREGLDIPEVSLVAVLDADKEGFLRSEVSLIQTIGRAA 571

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN +VILYAD +T S++ A+DET RRRE Q  +N +H I PQ+VK  I ++   ++  
Sbjct: 572 RNVNGRVILYADAVTASMRRALDETDRRREIQRAYNLEHGITPQTVKRNITDLHMAVVEA 631

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           D  T  ++ +        ++  A + +L ++M  AA  L FE+AA++RD I  LK
Sbjct: 632 DYVTVPMAAE-DGAEYKPEQLPAIVAALEQEMKEAARALEFEKAAQLRDRILALK 685


>gi|119384053|ref|YP_915109.1| excinuclease ABC subunit B [Paracoccus denitrificans PD1222]
 gi|119373820|gb|ABL69413.1| Excinuclease ABC subunit B [Paracoccus denitrificans PD1222]
          Length = 741

 Score =  850 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/677 (62%), Positives = 526/677 (77%), Gaps = 1/677 (0%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTG 178
           N                +    F M++++ P+GDQP AIA+L +G+ + E+ Q+LLG TG
Sbjct: 18  NTNAPVARFPEVSRPKLEGGKRFVMRSEFQPAGDQPTAIAELSQGVRAGERDQVLLGATG 77

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           +GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV
Sbjct: 78  TGKTFTMAKVIEQTQRPAIILAPNKTLAAQLYGEFKGFFPENAVEYFVSYYDYYQPEAYV 137

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLK 298
            R+DTYIEKES INE IDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+YS M   + 
Sbjct: 138 ARSDTYIEKESQINEAIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDMV 197

Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358
           +G   +Q+E L+ LV QQY+R D    RG FRV GD +E++P+HLED AWR   FGN++E
Sbjct: 198 VGQLYDQREFLAELVAQQYRRLDAAFQRGGFRVRGDLVEVWPAHLEDRAWRFDFFGNELE 257

Query: 359 EISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE 418
            I+EF PLTG K  + + I+IYANSHYVTPRPTL  A+K I+ EL+ RL +L  EG+LLE
Sbjct: 258 SITEFDPLTGAKTDSFKQIRIYANSHYVTPRPTLQQAIKGIRTELQTRLKQLADEGKLLE 317

Query: 419 AQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHV 478
           AQRLEQR  +DLEMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV
Sbjct: 318 AQRLEQRTNFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHV 377

Query: 479 TIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
           ++PQI GMYRGDF RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WEL+
Sbjct: 378 SVPQIGGMYRGDFRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAQWELD 437

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           Q  G+  EQ+IRPTGL+DP VEIR    QV+D+ DE+   A  G+R L+T LTKRMAEDL
Sbjct: 438 QTGGVFTEQVIRPTGLLDPQVEIRPVEMQVDDLLDEVRKVAAAGMRTLVTTLTKRMAEDL 497

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           TEYL+E+ IRVRYMHS++ T+ERIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILD
Sbjct: 498 TEYLHEQGIRVRYMHSDIDTIERIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILD 557

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH 718
           ADKEGFLRS+TSLIQTIGRAARN + +VI+YAD IT S++ A+ ET RRR+KQ+ +N+ H
Sbjct: 558 ADKEGFLRSETSLIQTIGRAARNADGRVIMYADRITGSMERAMAETERRRQKQVAYNEAH 617

Query: 719 NINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
            I PQ+V++ + +V+  +   D     I+   ++  +      AHL +LR QM  AA+NL
Sbjct: 618 GITPQTVRKNVEDVLAGLWQGDTDQARITTRVEK-PMVGANLAAHLDALRAQMRKAAENL 676

Query: 779 NFEEAARIRDEIKRLKS 795
            FEEAAR+RDE+KRL++
Sbjct: 677 EFEEAARLRDEVKRLEA 693


>gi|332140736|ref|YP_004426474.1| excinuclease ABC subunit B [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550758|gb|AEA97476.1| excinuclease ABC subunit B [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 671

 Score =  850 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/664 (55%), Positives = 488/664 (73%), Gaps = 6/664 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  L+ G+ S    Q LLGVTGSGKTFTMA VI+ +QRP +++A
Sbjct: 5   FELHSKYKPAGDQPKAIEALVDGLESGLAGQTLLGVTGSGKTFTMANVIKEVQRPTLILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++V+SVS IYG+G  ESY +M++ L+ GD+++Q+++L  L + QYKR 
Sbjct: 125 SATKALMERRDVVIVASVSAIYGLGDPESYMKMLLHLRQGDTMDQRDILRRLAELQYKRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD I+IFP+  E  A RV +F ++I++IS F PLTG   ++V    ++
Sbjct: 185 DLAFERGTFRVRGDVIDIFPADSEKQAVRVELFDDEIDKISLFDPLTGAVDKSVIRATVF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A+++IK+EL  R  +L++  +L+E QR+ QR  +D+EM+   G C 
Sbjct: 245 PKTHYVTPREKILNAIEHIKDELGGRKKQLQEANKLIEEQRISQRTQFDIEMMMELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTL +Y P D L+F+DESHVT+ Q+  MYRGD  RK TL E+
Sbjct: 305 GIENYSRYLSGRAPGEPPPTLLDYFPADGLMFIDESHVTVSQVGAMYRGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  + P TI VSATPG +EL + +G IVEQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEQICPQTIYVSATPGDYELRKTEGEIVEQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+DV  EI    +   R+L+T LTKRMAEDL+EYL E  ++VRY+HS++ T+E
Sbjct: 425 VRPVATQVDDVLSEIKKRVELDERVLITTLTKRMAEDLSEYLNEHGVKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 485 RIEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++N + ILYADTITKS++ A+DET RRREKQ+ HN+ +NI P  + + I +++D      
Sbjct: 545 HINGRAILYADTITKSMKKAMDETERRREKQMAHNEANNITPMRLNKPITDIMDLGESAH 604

Query: 741 AATTNISIDAQQLSLSKK------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A+  + +   +   SK+      +    +  L KQM   A  L FE+AA +RD+I+ L+
Sbjct: 605 PASGKVRLRKVEEKKSKQKAASATELMDQITELEKQMFEYARELEFEKAASLRDDIEALR 664

Query: 795 SSPY 798
               
Sbjct: 665 KQVV 668


>gi|126730954|ref|ZP_01746763.1| excinuclease ABC subunit B [Sagittula stellata E-37]
 gi|126708670|gb|EBA07727.1| excinuclease ABC subunit B [Sagittula stellata E-37]
          Length = 731

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/666 (63%), Positives = 521/666 (78%), Gaps = 1/666 (0%)

Query: 130 SINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI 189
                 +    F M T + P+GDQP AI +L  GI+  E+ Q+LLG TG+GKTFTMAKVI
Sbjct: 20  RTREKLEGGKRFVMHTTFSPAGDQPTAITELTGGINEGERDQVLLGATGTGKTFTMAKVI 79

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
           E  QRPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES
Sbjct: 80  EETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARSDTYIEKES 139

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELL 309
            INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   L +G   +Q++++
Sbjct: 140 QINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLFVGKEYDQRKVM 199

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369
           + L+ QQY+R D G  RGTFRV GD +E++P+HLED AWR+S FG ++E + EF PLTG 
Sbjct: 200 ADLIAQQYRRNDQGFSRGTFRVRGDVLEVWPAHLEDRAWRLSFFGEELEGLMEFDPLTGT 259

Query: 370 KIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD 429
           K    E I+IYANSHYVTPRPT+  A++ IK+EL+ RL +L  E +LLEAQRLEQR  +D
Sbjct: 260 KTDTFERIRIYANSHYVTPRPTMQQAIQGIKKELRQRLDQLVGEAKLLEAQRLEQRTNFD 319

Query: 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG 489
           LEMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMYRG
Sbjct: 320 LEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYRG 379

Query: 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
           D+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP +I VSATP +WELEQ  G+  EQ+I
Sbjct: 380 DYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSIFVSATPAAWELEQSGGVFTEQVI 439

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           RPTGL+DP VEIR    QV+D+ DEI   A  G R L TVLTKRMAEDLTEYL+E+ I+V
Sbjct: 440 RPTGLLDPQVEIRPVEMQVDDLLDEIRKVAASGYRTLATVLTKRMAEDLTEYLHEQGIKV 499

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           RYMHS++ T+ERIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+T
Sbjct: 500 RYMHSDIDTIERIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSET 559

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           SLIQTIGRAARN + +VI+YAD +T S++ AI ET RRREKQ+ +N++H I P++VK+ +
Sbjct: 560 SLIQTIGRAARNADGRVIMYADRMTGSMERAIGETNRRREKQIAYNEEHGITPETVKKNV 619

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            +++  +   D   + ++             +A L+ LR  M  AA+NL FEEAAR+RDE
Sbjct: 620 DDILAGLYQGDTDQSRVTAKIDPKHQ-GSNIQAVLEGLRNDMRKAAENLEFEEAARLRDE 678

Query: 790 IKRLKS 795
           +KRL++
Sbjct: 679 VKRLEA 684


>gi|332528395|ref|ZP_08404389.1| excinuclease ABC subunit B [Hylemonella gracilis ATCC 19624]
 gi|332042158|gb|EGI78490.1| excinuclease ABC subunit B [Hylemonella gracilis ATCC 19624]
          Length = 710

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/712 (53%), Positives = 501/712 (70%), Gaps = 11/712 (1%)

Query: 99  MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158
           M+ +  A A L  S     + G + TP  S +    S   + F++   Y PSGDQP AI 
Sbjct: 1   MSATPSAPAVLPDS----AEAGALATPVESAAGQFVSFPGSPFELFQPYPPSGDQPEAIN 56

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +L++G++  E  Q LLGVTGSGKT+TMA VI  + RPAI+ APNK LAAQLYSEF+ FFP
Sbjct: 57  RLVEGVNDGEVFQTLLGVTGSGKTYTMANVIARLGRPAIIFAPNKTLAAQLYSEFREFFP 116

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
            NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I+++R S T+SLLER D ++V++V
Sbjct: 117 RNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQLRLSCTKSLLERRDVVIVATV 176

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           S IYGIG  E Y QMI+ L+ GD + Q+++++ LV+ QY+R D+   RGTFRV GD++++
Sbjct: 177 SAIYGIGKPEDYHQMILTLRAGDKLGQRDVIAQLVRMQYQRNDMDFSRGTFRVRGDTVDV 236

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP+   ++A R+ +F ++IE +  F PLTG+  + +    +Y +SHYVTPR  +  A++ 
Sbjct: 237 FPAEHSELALRIELFDDEIENLQLFDPLTGRIKQKISRFTVYPSSHYVTPREQVLKAVET 296

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           IK EL  R+ E    G+L+EAQRLEQR  +DLEML   G C+ IENY+R+L+G  PG+PP
Sbjct: 297 IKVELVDRVKEFVDAGKLVEAQRLEQRTRFDLEMLSEVGHCKGIENYTRHLSGARPGDPP 356

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           PTL +Y+P D+L+F+DESHV I Q+ GMY GD  RK TL EYGFRLPS +DNRPL+FEE+
Sbjct: 357 PTLTDYLPRDALMFLDESHVMIGQLGGMYNGDRARKTTLVEYGFRLPSALDNRPLKFEEF 416

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
                  I VSATPG WE     G +VEQ++RPTGL+DP VE+R A  QV+DV  EI L 
Sbjct: 417 ETKMRQAIFVSATPGDWEKTHT-GAVVEQLVRPTGLIDPEVEVRPALHQVDDVLQEIRLR 475

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++  R+L+TVLTKRMAE LT+YL E  ++VRY+HS+V T+ER+EI+RDLRLG FDVLVG
Sbjct: 476 VERHERVLITVLTKRMAEQLTDYLTENGVKVRYLHSDVDTVERVEILRDLRLGSFDVLVG 535

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           INLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAARN+  K ILYAD IT S++
Sbjct: 536 INLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLRGKAILYADRITDSMK 595

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA------TTNISIDAQQ 752
            A+ ET RRR KQL HN +H I P+++ +++ ++ID +  E A              AQ 
Sbjct: 596 RALGETERRRAKQLAHNTEHGITPRAIVKQVRDLIDGVYSEKAGRESERLEREAMARAQV 655

Query: 753 LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
             +S+K     +K L KQM   A NL FE+AA+ RD++  LK+  +   + D
Sbjct: 656 EDMSEKDIAREIKRLEKQMLEHAKNLEFEQAAKTRDQLTLLKARAFGAAVPD 707


>gi|56695458|ref|YP_165806.1| excinuclease ABC subunit B [Ruegeria pomeroyi DSS-3]
 gi|56677195|gb|AAV93861.1| UvrABC system protein B [Ruegeria pomeroyi DSS-3]
          Length = 732

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/680 (62%), Positives = 529/680 (77%), Gaps = 6/680 (0%)

Query: 116 LLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
           L+         R        +    F MQT++ P+GDQP AIA+L +G++  E+ Q+LLG
Sbjct: 12  LMHAPAPDVKARP-----KLEGGRRFVMQTEFQPAGDQPTAIAELTQGVNEGERNQVLLG 66

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP NAVEYFVS+YDYYQPE
Sbjct: 67  ATGTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSFYDYYQPE 126

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AYV R+DTYIEKES INEQIDRMRHSATR+LLER+D I+++SVSCIYGIGSVE+Y  M  
Sbjct: 127 AYVARSDTYIEKESQINEQIDRMRHSATRALLERDDVIIIASVSCIYGIGSVETYGAMTQ 186

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            LK+G   +Q+++++ LV QQYKR D    RG+FRV GDS+E++P+HLED AW++S FG 
Sbjct: 187 DLKVGGEYDQRQIMADLVAQQYKRNDQAFQRGSFRVRGDSLEVWPAHLEDRAWKLSFFGE 246

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           ++E I+EF PLTGQK    + I++YANSHYVTP+PT+  A+  IK+EL+ RL +L  EG+
Sbjct: 247 ELEAITEFDPLTGQKTDTFDQIRVYANSHYVTPKPTMQQAIIGIKQELRQRLDQLVGEGK 306

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRLEQR  +DLEMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+ +++F DE
Sbjct: 307 LLEAQRLEQRTNFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDHAIVFADE 366

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHV++PQI GMYRGD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +W
Sbjct: 367 SHVSVPQIGGMYRGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAW 426

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           E+EQ  G+  EQ+IRPTGL+DP VEIR    QV+D+ DE+   A QG R L+T LTKRMA
Sbjct: 427 EMEQSGGVFTEQVIRPTGLLDPQVEIRPVEMQVDDLLDEVRKMADQGFRTLVTTLTKRMA 486

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLTEYL+E+ I+VRYMHS++ TLERIEI+RDLRLG FDVLVGINLLREGLDIPECGLVA
Sbjct: 487 EDLTEYLHEQGIKVRYMHSDIDTLERIEILRDLRLGAFDVLVGINLLREGLDIPECGLVA 546

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS+TSLIQTIGRAARN   +VI+YAD IT S++ A+ ET RRR KQ+ +N
Sbjct: 547 ILDADKEGFLRSETSLIQTIGRAARNAEGRVIMYADRITGSMERALGETDRRRAKQIAYN 606

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAA 775
           ++H I P +VK+ + +V+  +   D   + ++    +  L     +A L  LR  M  AA
Sbjct: 607 EEHGITPATVKKNVEDVLAGLYKGDTDMSRVTAKIDK-PLHGGNLEAVLDGLRADMRKAA 665

Query: 776 DNLNFEEAARIRDEIKRLKS 795
           +NL FEEAAR+RDE+KRL++
Sbjct: 666 ENLEFEEAARLRDEVKRLEA 685


>gi|260753114|ref|YP_003226007.1| excinuclease ABC subunit B [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552477|gb|ACV75423.1| excinuclease ABC, B subunit [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 740

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/694 (61%), Positives = 527/694 (75%), Gaps = 5/694 (0%)

Query: 106 LARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH 165
           +   I++     +N   + PHR       ++    F++ +DY P+GDQP AI+ L K I 
Sbjct: 1   MTIAIRTTLDEPENHSDFVPHRPSRPEK-TEPSKPFRLVSDYEPAGDQPQAISALCKDIQ 59

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
             E+ Q+LLGVTGSGKTFTMAKVIE +QRP++++APNKILAAQLY EFK FFP NAVE+F
Sbjct: 60  KGERDQVLLGVTGSGKTFTMAKVIEKLQRPSLILAPNKILAAQLYGEFKRFFPENAVEFF 119

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
           VSYYDYYQPEAYVPRTDTYIEK+S+INE IDRMRH+ATRSLLER D I+V+SVSC+YGIG
Sbjct: 120 VSYYDYYQPEAYVPRTDTYIEKDSAINEAIDRMRHAATRSLLEREDVIIVASVSCLYGIG 179

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           SV++YS M  +L  G  V+Q+E++  LV  QYKR ++   RG+FRV GD++EIFPSH ED
Sbjct: 180 SVDTYSSMTFRLLKGQLVDQREIIRRLVALQYKRNEVAFGRGSFRVKGDTLEIFPSHYED 239

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           +AWR+S FG++IEEISEF PLTG KI  ++ IKIYANSHYVTP PTL  A   I+ EL  
Sbjct: 240 MAWRISFFGDEIEEISEFDPLTGVKIAKLDQIKIYANSHYVTPEPTLKAANNAIRRELDS 299

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           RL E + EG+LLEAQRLE+R  +DLEM+  TG+C  IENYSR+LTGR PGEPPPTLFEY+
Sbjct: 300 RLREFKAEGKLLEAQRLEERTEFDLEMMAATGACSGIENYSRFLTGRAPGEPPPTLFEYL 359

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
           P+++LLFVDESH TIPQI+GM RGD+ RK TLA+YGFRLPSC+DNRPLRFEEWN +RP T
Sbjct: 360 PDNALLFVDESHQTIPQINGMSRGDYRRKTTLADYGFRLPSCIDNRPLRFEEWNAMRPQT 419

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
           + VSATPG WELEQ  G+ VEQIIRPTGLVDP +E+R    QV+++  E    A  G R 
Sbjct: 420 VYVSATPGPWELEQTGGVFVEQIIRPTGLVDPAIEVRPIEEQVDNLIFEAKKTAAAGWRS 479

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+T LTKRMAEDLTEY+YE  ++VRYMHS+V+T+ERIE+IRDLRLG +DVL+GINLLREG
Sbjct: 480 LVTTLTKRMAEDLTEYMYEAGLKVRYMHSDVETIERIELIRDLRLGVYDVLIGINLLREG 539

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LDIPECGLVA+LDADKEGFLRS+TSLIQTIGRAARN   +VILY D IT S+  A+ ET 
Sbjct: 540 LDIPECGLVAVLDADKEGFLRSETSLIQTIGRAARNAEGRVILYGDKITGSMARAMAETE 599

Query: 706 RRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
           RRR KQ+  NK HNI P +VK ++ +++    + +++    +I+        K     + 
Sbjct: 600 RRRIKQIAWNKAHNIIPATVKRQVDDIVGHFGVVNSSEAAATIENH----DPKVLARSIS 655

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
              K+M  AA NL FE+AA++RD + +LK     
Sbjct: 656 ETEKEMLEAAANLEFEKAAQLRDVLHQLKRQELG 689


>gi|119774963|ref|YP_927703.1| excinuclease ABC subunit B [Shewanella amazonensis SB2B]
 gi|119767463|gb|ABM00034.1| Excinuclease ABC subunit B [Shewanella amazonensis SB2B]
          Length = 672

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/665 (54%), Positives = 474/665 (71%), Gaps = 7/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AIA+L+ G+ S    Q LLGVTGSGKTFT+A VI  + RP I+MA
Sbjct: 6   FQLSSHYSPAGDQPTAIAKLIDGLESGLACQTLLGVTGSGKTFTVANVIATLGRPTIIMA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++MR 
Sbjct: 66  PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQMRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 126 SATKALLERRDVIIVASVSAIYGLGDPDSYMKMLLHLRQGDFMGQRDILRRLSELQYSRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + RGTFRV G+ I+IFP+  E  A RV +F ++IE ISEF PLTGQ  + +    +Y
Sbjct: 186 DIDLQRGTFRVRGEVIDIFPADSERDAIRVELFDDEIERISEFDPLTGQVTKRLARATVY 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A+  IK+EL++R  +     +L+EAQR+ +R+ YD+EM+   G C 
Sbjct: 246 PKTHYVTPREKILEAIDQIKDELRVRKQQFLDNHKLIEAQRITERVQYDVEMMTELGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GE PPTL +Y+P D L+ +DESH T+PQI  MY+GD  RK TL EY
Sbjct: 306 GIENYSRYLSGRAEGEGPPTLLDYLPADGLMIIDESHNTVPQIGAMYKGDRSRKTTLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P TI VSATPG +ELE+    I EQ++RPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLKFEEFESLMPQTIFVSATPGKYELEKSGDDIAEQVVRPTGLIDPELE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  E+        R+L+T LTKRMAEDLT+YL E  ++VRY+HS++ T+E
Sbjct: 426 VRPVAIQVDDLLSEVAKRVAVNERVLVTTLTKRMAEDLTDYLDEHGVKVRYLHSDIDTVE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 486 RMEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           NVN KVILYAD IT S+  A+ ET RRR KQ++ N++H I P+ V +KI +V+D      
Sbjct: 546 NVNGKVILYADRITDSMARAMAETERRRTKQMQFNEEHGIIPRGVVKKITDVMDVGERSA 605

Query: 735 -PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                  A+  +  +    +     +    + +L KQMH  A +L FE+AA +RDEI  L
Sbjct: 606 PSRGAVKASGRSRDVGKPSMRQDPHQIAVTIDALEKQMHQHARDLEFEQAAALRDEIHGL 665

Query: 794 KSSPY 798
           +    
Sbjct: 666 RQQLL 670


>gi|71082789|ref|YP_265508.1| excinuclease ABC subunit B [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71061902|gb|AAZ20905.1| excinuclease ABC chain B [Candidatus Pelagibacter ubique HTCC1062]
          Length = 723

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/672 (62%), Positives = 528/672 (78%), Gaps = 6/672 (0%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
           ++  I+   +    F++ TD+ P+GDQP AI QL+KG +  E  Q+LLGVTGSGKTFTMA
Sbjct: 15  KNPEIHQKLEGGQKFKLVTDFKPAGDQPEAIKQLVKGANKDELSQVLLGVTGSGKTFTMA 74

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
           +VIE   RPA+++APNK LAAQLY E K+FFP NAVEYFVSYYDYY PEAYVPR+DTYIE
Sbjct: 75  QVIERTNRPALILAPNKTLAAQLYGEMKSFFPENAVEYFVSYYDYYTPEAYVPRSDTYIE 134

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           KE+SINEQIDRMRHSATRSLLER+D I+VSSVSCIYG+GSVE+YS+M + LK      ++
Sbjct: 135 KEASINEQIDRMRHSATRSLLERDDVIIVSSVSCIYGLGSVEAYSKMTLSLKKDYDYNRE 194

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +L+ +LV  QYKR D    RGTFR  G+ IEIFPSHLED AWR+S+FG+ +E+I EF PL
Sbjct: 195 QLIKTLVHLQYKRNDQSFYRGTFRARGEYIEIFPSHLEDRAWRLSLFGDKLEKIEEFDPL 254

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG  +++++ IK+YANSHY+TP+PT+  A+  IK EL++ L + +++ +LLEAQRLE+R 
Sbjct: 255 TGDLLKDLDVIKVYANSHYITPKPTIEQAVIKIKRELEVTLKKFKEQNKLLEAQRLEERT 314

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
            +DLEM+E TGSC  IENYSR+L+GR PGEPPPTLFEY P+++L+FVDE HVT+PQ++GM
Sbjct: 315 KFDLEMIEATGSCAGIENYSRFLSGRKPGEPPPTLFEYFPDNTLIFVDECHVTVPQLNGM 374

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           Y+GD  RK+ LAEYGFRLPSCMDNRPL+FEEW+ +R  T+ VSATPG WELEQ +G  VE
Sbjct: 375 YKGDRSRKSNLAEYGFRLPSCMDNRPLKFEEWDAMRTQTVFVSATPGPWELEQTKGKFVE 434

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           QIIRPTGL+DPPVEI+ A+ QV+DV  E      +  R+L+T LTK+MAEDLTEY +E  
Sbjct: 435 QIIRPTGLIDPPVEIKPAKNQVDDVMHECKKTIDKNFRVLITTLTKKMAEDLTEYFHENG 494

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           IRVRY+HS++ TLERIEI+RDLRLG FDVLVGINLLREGLDIPEC LVAILDADKEGFLR
Sbjct: 495 IRVRYLHSDIDTLERIEIMRDLRLGVFDVLVGINLLREGLDIPECALVAILDADKEGFLR 554

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S+TSLIQTIGRAARN++ +VILYAD  TKSI+ AI ET RRR  Q+ +NKKHNI+  S+K
Sbjct: 555 SETSLIQTIGRAARNLDGRVILYADKETKSIKKAIQETDRRRTIQVAYNKKHNIDATSIK 614

Query: 727 EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           ++I +V++ +  +D        +           K HLK L K+M  AA NL FEEAA+I
Sbjct: 615 KEISDVLESVYEKDYLKVGTGDNIGG------NLKKHLKQLNKRMKDAATNLEFEEAAKI 668

Query: 787 RDEIKRLKSSPY 798
           RDEI+ L++S  
Sbjct: 669 RDEIRNLEASEL 680


>gi|219872236|ref|YP_002476611.1| excinuclease ABC subunit B [Haemophilus parasuis SH0165]
 gi|219692440|gb|ACL33663.1| excinuclease ABC subunit B [Haemophilus parasuis SH0165]
          Length = 671

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/666 (56%), Positives = 489/666 (73%), Gaps = 6/666 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           SK    F + + + PSGDQP AIA+L++G++     Q LLGVTGSGKTFT+A VI  + R
Sbjct: 2   SKQGKPFILHSPFKPSGDQPTAIAKLVEGLNDGLAHQTLLGVTGSGKTFTIANVIATLNR 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PA+V+APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQ
Sbjct: 62  PAMVLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQ 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G+ ++Q+++LS L +
Sbjct: 122 IEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGEMIDQRKILSRLAE 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    R TFRV G+ I+IFP+  +DVA RV +F ++IE +S F PLTG  +  V
Sbjct: 182 LQYTRNDQAFQRATFRVRGEVIDIFPAESDDVALRVELFDDEIENLSLFDPLTGHNLGRV 241

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+ 
Sbjct: 242 PRYTIYPKTHYVTPRDRILEAIEQIKKELAERRTYFIKENKLLEEQRIAQRTQFDIEMMN 301

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GM+RGD  RK
Sbjct: 302 ELGYCSGIENYSRYLSGRKEGEPPPTLFDYMPSDGLLIIDESHVTVPQIGGMFRGDRARK 361

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    +++Q++RPTGL
Sbjct: 362 ETLVQYGFRLPSALDNRPLRFEEFERLSPQTIYVSATPGPYELEK-NPDVIDQVVRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+R   TQV+D+  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS
Sbjct: 421 LDPIIEVRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 481 DIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D
Sbjct: 541 IGRAARNLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIVPQALNKKVGELLD 600

Query: 735 PILLEDAATTNISIDAQQL-----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
               +    +  S  +          S+K+ +  LK L +QM   A +L FE+AA +RD+
Sbjct: 601 IGQTDKPKRSKKSAKSSDDQTAYTPKSRKELEKELKVLEQQMRDFAKDLEFEKAAAVRDK 660

Query: 790 IKRLKS 795
           I +LK+
Sbjct: 661 IHQLKA 666


>gi|291527384|emb|CBK92970.1| excinuclease ABC, B subunit [Eubacterium rectale M104/1]
          Length = 660

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/657 (52%), Positives = 464/657 (70%), Gaps = 3/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL+KG     + + LLGVTGSGKTFTMA VI A+ +P ++++
Sbjct: 3   FKLHSKYKPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIAALNKPTLIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP++DTYI K+SS+N++ID++R 
Sbjct: 63  HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQSDTYIAKDSSVNDEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IVV+SVSCIYG+GS + ++ M + L+ G   ++ +L  SL+  QY R 
Sbjct: 123 SATAALTERKDVIVVASVSCIYGLGSPDEWTGMSISLRPGQERDRDDLARSLIDLQYTRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD ++IFP++ +D A RV  FG++I+ I E   LTG+   ++E   I+
Sbjct: 183 DMDFHRGTFRVHGDVLDIFPANADDTAIRVEFFGDEIDRIVEVDVLTGEVKCSLEHTMIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  +  +N A   I++EL  R+   + E +L+EAQR+ +R  +D+EM+  TG C 
Sbjct: 243 PASHYVVSQEKINEACLNIEKELDERVKYFKGEDKLIEAQRIAERTNFDIEMMRETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L    PGEPP TL ++ P+D L+ VDESH+TIPQI GMY GD  RK TL +Y
Sbjct: 303 GIENYTRHLNFAKPGEPPMTLIDFFPDDFLIIVDESHITIPQIGGMYAGDRSRKTTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATP  +E E  + +  EQIIRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLNFEEFEGKIDQMLFVSATPNKYENEH-ELLRAEQIIRPTGLLDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N       ++L+T LTKRMAEDLT Y+ E  IRV+Y+HS++ TLE
Sbjct: 422 VRPVEGQIDDLVSEVNKETANHHKVLITTLTKRMAEDLTNYMAELGIRVKYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S+++AIDET RRR+ Q E+N+ H I PQ++++ + ++I   + + 
Sbjct: 542 NSEGHVIMYADKITDSMRVAIDETKRRRKVQEEYNEAHGITPQTIQKSVRDLI--AISKK 599

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            A    ++D    S+SKK+ + H+  + K+M  AA  LNFE AA  RD++  LK++ 
Sbjct: 600 VAADENALDKDPESMSKKELEKHIADIEKKMKKAAAELNFEAAAEYRDKLIMLKNTL 656


>gi|238759771|ref|ZP_04620929.1| UvrABC system protein B [Yersinia aldovae ATCC 35236]
 gi|238702003|gb|EEP94562.1| UvrABC system protein B [Yersinia aldovae ATCC 35236]
          Length = 670

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/665 (55%), Positives = 469/665 (70%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +++ P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +V
Sbjct: 3   KIFKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTIANVIADLNRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SS+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E++S F PLTGQ    V    
Sbjct: 183 RNDQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVEKLSVFDPLTGQLQHEVPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  AM+ IK EL  R   L    +LLE QR+ QR  +DLEM+   G 
Sbjct: 243 VYPKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRIAQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+    +++Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGDEVIDQVVRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI + A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLGEHGARVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN+N K ILY D IT S++ AI ET RRR KQ  HN++H I PQ + +KI +++     
Sbjct: 543 ARNLNGKAILYGDRITASMEKAIGETERRRVKQQIHNQEHGITPQGLNKKIGDILQLGKP 602

Query: 735 -PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                       ++      SL  K     ++ L  +M+  A NL FE+AA +RD++ +L
Sbjct: 603 STRGKGKGRGGKVADTHDYQSLPPKALDQKIRELEAKMYTHAQNLEFEQAADLRDQVHQL 662

Query: 794 KSSPY 798
           +    
Sbjct: 663 RQQFI 667


>gi|320196726|gb|EFW71349.1| Excinuclease ABC subunit B [Escherichia coli WV_060327]
          Length = 673

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 477/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARCKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|296388360|ref|ZP_06877835.1| excinuclease ABC subunit B [Pseudomonas aeruginosa PAb1]
          Length = 670

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/669 (55%), Positives = 483/669 (72%), Gaps = 9/669 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  FQ+ + + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +
Sbjct: 1   MDTFQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VS IYG+G   SY +M++ L  GD ++Q+ELL  L   QY
Sbjct: 121 MRLSATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+IFP+  +  A RV +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A+  IK ELK RL  L    +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+  M++GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPLRFEEW  + P TI VSATPG +E E   G I+EQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRIIEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R A TQV+D+  +I     +  R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ 
Sbjct: 420 EIEVRPAMTQVDDLLSQIRQRVAKNERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN++ K ILYAD +T S+Q AIDET RRR KQ+  N+ H I P+ V++ I ++++  +
Sbjct: 540 AARNLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNQAHGIVPKGVRKDIKDILEGAV 599

Query: 738 LEDAATT--------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           +  A             S   +    S  +    ++ L ++M+  A +L FE AA++RDE
Sbjct: 600 VPGARGKRKGVAKVAEESGRYENELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRDE 659

Query: 790 IKRLKSSPY 798
           I+ L+    
Sbjct: 660 IQTLRERLV 668


>gi|118443519|ref|YP_877357.1| excinuclease ABC subunit B [Clostridium novyi NT]
 gi|189037961|sp|A0PYA5|UVRB_CLONN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|118133975|gb|ABK61019.1| excinuclease ABC, B subunit [Clostridium novyi NT]
          Length = 657

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/660 (53%), Positives = 469/660 (71%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P+GDQP AI  + +GI   EK Q LLGVTGSGKTFTMA +IE +Q+P +
Sbjct: 1   MNQFKIHSPYKPTGDQPRAIKSISEGILKGEKFQTLLGVTGSGKTFTMANIIEKVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF+ FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID+
Sbjct: 61  VLAHNKTLAAQLTSEFREFFPENCVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ERND IVV+SVSCIYG+G+ E Y ++ V L+ G   ++ E++  LV  QY
Sbjct: 121 LRHSATSALFERNDVIVVASVSCIYGLGNPEEYKKLTVSLREGMEKDRDEIMRQLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R +I  +RGTFR  GD ++IFP+   ++  RV  FG++I++I EF  LTG  I   +  
Sbjct: 181 ERNEINFVRGTFRARGDVLDIFPASSTNIGIRVEFFGDEIDKIREFDVLTGNIISARKHA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+ T +  L  A+K I+EEL+ R+  L  E +LLEAQR+ QR  +D+EM+   G
Sbjct: 241 LIFPASHFATSKDKLEIAIKKIEEELEDRVKVLTAEDKLLEAQRVRQRTNFDIEMMREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L GR PG PP TL +Y P+D LLF+DESHVT+PQ+  MY GD  RK  L
Sbjct: 301 YCSGIENYSRVLDGRAPGTPPKTLMDYFPDDFLLFIDESHVTLPQVKAMYGGDRSRKNNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP   DNRPL+F+E+      T+ VSATP  +ELE     + EQIIRPTGL+DP
Sbjct: 361 VEYGFRLPCAYDNRPLKFDEFEGKLNQTVFVSATPAQYELEHSTN-VAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++  + Q++D+Y  I     +G R+L+T LTK+M+EDLT+YL    I+  Y+HS + 
Sbjct: 420 EIIVKPIKGQIDDLYASIKETIDKGFRVLVTTLTKKMSEDLTDYLKSMGIKTEYLHSSID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T++R+EIIRDLR GKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSL+QTIGR
Sbjct: 480 TIKRMEIIRDLRKGKFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLVQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+YAD ITK++  AI ET RRR+ Q+E+N KH I P++V + I +VI   +
Sbjct: 540 AARNSESKVIMYADNITKAMDKAISETNRRRKIQMEYNDKHGIVPRTVLKDIRDVIQTKV 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            ED A   ++ +  +  LSKK+ +  +    ++M +AA  L FE AA +RDEI +LK   
Sbjct: 600 AEDEAEYKVNNNTDK--LSKKEIEKLINKYEEEMKVAAKELQFERAAELRDEILKLKEQL 657


>gi|288905600|ref|YP_003430822.1| excinuclease ABC (subunit B) [Streptococcus gallolyticus UCN34]
 gi|288732326|emb|CBI13896.1| excinuclease ABC (subunit B) [Streptococcus gallolyticus UCN34]
          Length = 663

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/659 (53%), Positives = 475/659 (72%), Gaps = 3/659 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F++ + Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P 
Sbjct: 6   ENNQFKLVSKYQPSGDQPEAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPT 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID
Sbjct: 66  LVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEID 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++RHSAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q
Sbjct: 126 KLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNDLVDIQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           ++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE 
Sbjct: 186 FERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGEVEH 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           + I+  +H++T    +  A+  I EE++ ++ + E EG+L+EAQR+ QR  YD+EML   
Sbjct: 246 LAIFPATHFMTNEEHMEHAIHNILEEMEEQVKQFEAEGKLIEAQRIRQRTEYDVEMLREM 305

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G    +ENYSRY+ GR+ GEPP TL ++ PED L+ VDESH+T+ QI GMY GD  RK  
Sbjct: 306 GYTNGVENYSRYMDGRSEGEPPFTLLDFFPEDFLIMVDESHMTMGQIKGMYNGDRSRKEM 365

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPLR EE+       + VSATPG +ELEQ    +VEQIIRPTGL+D
Sbjct: 366 LVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYELEQT-DTVVEQIIRPTGLLD 424

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P VE+R    Q++D+  EIN  A++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++
Sbjct: 425 PEVEVRPTMGQMDDLLGEINSRAEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDI 484

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIG
Sbjct: 485 KTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIG 544

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN    VI+YAD IT+S+Q A+DET RRRE Q+ +N++H I PQ++K+ I ++I   
Sbjct: 545 RAARNSEGHVIMYADKITESMQKAMDETARRREIQMRYNEEHGIIPQTIKKDIRDLIAIS 604

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              D      + D    +++K + +  +K L+KQM  AA+ L+FE AA++RD +  LK+
Sbjct: 605 KSSDTDVAEDTPD--YNAMTKAERQETIKKLQKQMQEAAEMLDFELAAQLRDMVLELKA 661


>gi|104780800|ref|YP_607298.1| excinuclease ABC subunit B [Pseudomonas entomophila L48]
 gi|95109787|emb|CAK14492.1| exonuclease ABC subunit B (ATP-dependent DNA excision repair enzyme
           UvrAC) [Pseudomonas entomophila L48]
          Length = 671

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/670 (55%), Positives = 487/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI Q+++GI +    Q LLGVTGSGKTF++A VI+ +QRP +
Sbjct: 1   MSEFQLVTRFQPAGDQPEAIRQMVEGIDAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTM 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLTDLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   R TFRV GD I+IFP+  +  A R+ +F +++E I+ F PLTG+ IR +   
Sbjct: 181 TRNEMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A++ IKEELK RL  L    +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLVEAVEGIKEELKERLEYLNTHNKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTL++Y+P+D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPAGAPPPTLYDYLPDDALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG +E E   G +VEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEAVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R A TQV+D+  EI     QG R+L T LTKRMAEDLT+YL + ++RVRY+HS++ 
Sbjct: 420 QVEVRPALTQVDDLLSEIGKRVAQGERVLATTLTKRMAEDLTDYLADHDVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N K ILYAD IT S+Q AIDET RRREKQ+  N  + I P+ V + I ++++   
Sbjct: 540 AARNLNGKAILYADNITGSMQRAIDETERRREKQIAFNAANGIVPKGVVKDITDIMEGAT 599

Query: 738 LEDAATTNISIDAQQLSL---------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  A +      A+             +  +    +K L ++M   A +L FE AA++RD
Sbjct: 600 VPGARSKKRKGMAKAAEEAGRYEVELQTPAQITKRIKQLEEKMFQFARDLEFEAAAQLRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EIGQLRERLI 669


>gi|124267474|ref|YP_001021478.1| excinuclease ABC subunit B [Methylibium petroleiphilum PM1]
 gi|124260249|gb|ABM95243.1| Excinuclease ABC subunit B [Methylibium petroleiphilum PM1]
          Length = 710

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/697 (54%), Positives = 497/697 (71%), Gaps = 7/697 (1%)

Query: 115 PLLKNGKIWTPHRSWSINN---HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ 171
           P   +    TP    ++      S   + FQ+   Y P+GDQP AI QL+ GI+  E  Q
Sbjct: 2   PEPAHVLPVTPEAPAALPEGEFVSFPDSPFQLFQPYPPAGDQPTAIGQLVDGINDGEVFQ 61

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
            LLGVTGSGKTFTMA VI  + RPAIV APNK LAAQLYSEF++FFP NAVEYFVSYYDY
Sbjct: 62  TLLGVTGSGKTFTMANVIARLGRPAIVFAPNKTLAAQLYSEFRDFFPKNAVEYFVSYYDY 121

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           YQPEAYVP+ D +IEK+S+INE I++MR SAT+SLLER D I+V++VS IYGIG  E Y+
Sbjct: 122 YQPEAYVPQRDLFIEKDSAINEHIEQMRLSATKSLLERRDVIIVATVSAIYGIGKPEDYT 181

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           QM + ++ G  + Q++L++ L++ QYKR +    RGTFRV GD+++IFP+   ++A R+ 
Sbjct: 182 QMRLIVRAGGKLGQRDLIAQLIRMQYKRNETDFARGTFRVRGDTVDIFPAEHSELAIRIE 241

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +S F PLTGQ  + V    +Y +SHYVTPR  +  A++ IKEEL+ RL E  
Sbjct: 242 LFDDEIEALSLFDPLTGQIRQKVPRFVVYPSSHYVTPREQVLAAIEGIKEELRNRLAEFV 301

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
            +G+L+EAQR+EQR  +DLEML+  G C+ IENYSR+L G  PGEPP TL +Y+P+D+L+
Sbjct: 302 ADGKLVEAQRIEQRTRFDLEMLQEIGHCKGIENYSRHLAGSAPGEPPSTLVDYLPKDALM 361

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           F+DESHV I Q+ GM+ GD  RK TL EYGFRLPS +DNRPL+FEE+       + VSAT
Sbjct: 362 FLDESHVLIGQLGGMFNGDRARKTTLVEYGFRLPSALDNRPLKFEEFETKMRQVVFVSAT 421

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
           P ++E E   G +VEQ++RPTGLVDP VE+R A  QV+DV  EI        R+L+T LT
Sbjct: 422 PATYEQEHA-GNVVEQLVRPTGLVDPVVEVRPATHQVDDVLQEIRDRVDANERVLITTLT 480

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           KRMAE LT+YL +  ++VRY+HS+V T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE 
Sbjct: 481 KRMAEQLTDYLADNGVKVRYLHSDVDTVERVEILRDLRLGSFDVLVGINLLREGLDIPEV 540

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
            LVAILDADKEGFLRS+ SLIQTIGRAARN+N K ILYAD IT S++ AI ET RRRE+Q
Sbjct: 541 SLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYADKITDSMRRAIGETERRRERQ 600

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLR 768
           +  N +H I P+S+ +++ ++ID +  E +   ++      A+  S+S+K     +K L 
Sbjct: 601 IAFNAEHGITPRSINKQVKDLIDGVYSEKSRGDDLKAAQAAAEIESMSEKDLGKRIKLLE 660

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           KQM   A +L FE+AAR+RD++  L+   +     D+
Sbjct: 661 KQMLEHARSLEFEKAARVRDQLALLREQAFGGAGHDN 697


>gi|78043646|ref|YP_359130.1| excinuclease ABC subunit B [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|90110878|sp|Q3AFF4|UVRB_CARHZ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|77995761|gb|ABB14660.1| excinuclease ABC, B subunit [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 662

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/659 (55%), Positives = 482/659 (73%), Gaps = 2/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F ++ +Y P GDQP AI +L +GI    K+Q LLGVTGSGKTFTMA VI  + +P +
Sbjct: 1   MERFLLKANYTPKGDQPKAIKELTEGIEKGLKMQTLLGVTGSGKTFTMANVIANVNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQL +EF+ FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++ID+
Sbjct: 61  VIAPNKTLAAQLCAEFREFFPENAVEYFVSYYDYYQPEAYLPATDTYIEKDSAINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G  + Y ++++ ++ G   E++ +L  LV  QY
Sbjct: 121 LRHSATAALFERRDVIIVASVSCIYGLGDPQEYRELLLSVRKGQIYEREAILRKLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R +  + RG FRV GD IE+FP+   D A R+ +FG++++ I EF  LTG+ I  ++ +
Sbjct: 181 ERNEYDLTRGKFRVRGDVIEVFPASYTDRAVRIELFGDEVDRILEFDTLTGEIIGELKHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+ T +  L  A+K I+EEL+ RL   E+ G+LLEAQRL+QR  YD+EML   G
Sbjct: 241 AIFPASHFATSKEKLERAIKSIEEELEERLRYFEERGKLLEAQRLKQRTLYDIEMLREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
             + IENYSR+LTGR PGEPP TL +Y P+D L+ +DESH+TIPQI GMY GD  RK  L
Sbjct: 301 YTKGIENYSRHLTGRKPGEPPYTLIDYFPKDFLMIIDESHITIPQIRGMYEGDRSRKEAL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL+F E+       + VSATPG +EL+  Q  IVEQIIRPTGLVDP
Sbjct: 361 VEYGFRLPSAFDNRPLKFHEFEARINQVVFVSATPGPYELKHSQ-KIVEQIIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R  R QV+D+Y EI     +  R+L+T LTK+MAEDLTEY  E  ++VRY+HS++ 
Sbjct: 420 EVEVRPTRGQVDDLYGEIKERVARNERVLVTTLTKKMAEDLTEYFREMGVKVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+EI+RDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS+ SLIQTIGR
Sbjct: 480 TLERVEILRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN KVI+YADT+T S+Q AIDET RRR+ Q+E+N+KH I PQ+V++ + +VI+   
Sbjct: 540 AARNVNGKVIMYADTVTASMQKAIDETNRRRKLQMEYNRKHGITPQTVQKAVRDVIEATR 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              A    +  D  Q  +S K+ K +++ L ++M  AA  L FE+AA +RD I  L++ 
Sbjct: 600 AVTAELPEVKRDFIQ-KMSAKEFKQYVEKLTREMKEAAKALEFEKAAMLRDLIIELRAQ 657


>gi|50121744|ref|YP_050911.1| excinuclease ABC subunit B [Pectobacterium atrosepticum SCRI1043]
 gi|81827077|sp|Q6D3C4|UVRB_ERWCT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|49612270|emb|CAG75720.1| excision nuclease ABC subunit B [Pectobacterium atrosepticum
           SCRI1043]
          Length = 670

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/663 (55%), Positives = 469/663 (70%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +++A
Sbjct: 5   FTLNSDFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMMLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTG  ++ V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHVLQTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +L+E QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEDIKVELADRKKVLLANDKLVEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATP  +ELE+  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPSHYELEKSGGDVIDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI L A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVGTQVDDLLSEIRLRAAINERVLVTTLTKRMAEDLTEYLQEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILY D IT S+  AI ET RRREKQ  +N +H I PQ + +KI +++      +
Sbjct: 545 NLRGKAILYGDRITASMAKAISETERRREKQEAYNTEHGIVPQGINKKISDILQLGQSAN 604

Query: 741 AAT-----TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                         A+   ++ K  +  ++ L  +M   A NL FEEAA +RDE++ L++
Sbjct: 605 KGKGRGNRKAAEPAARYELMTPKALELKIRELESKMLTHAQNLEFEEAAALRDEVQVLRA 664

Query: 796 SPY 798
              
Sbjct: 665 QFI 667


>gi|237748603|ref|ZP_04579083.1| excinuclease ABC subunit B [Oxalobacter formigenes OXCC13]
 gi|229379965|gb|EEO30056.1| excinuclease ABC subunit B [Oxalobacter formigenes OXCC13]
          Length = 697

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/671 (53%), Positives = 484/671 (72%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D + FQ+   + PSGDQP AI +L++GI      Q LLGVTGSGKT+TMA VI  + RPA
Sbjct: 19  DNSPFQLYQPFSPSGDQPEAIDKLVEGIEDGLSFQTLLGVTGSGKTYTMANVIARLGRPA 78

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I+
Sbjct: 79  IVFAPNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIE 138

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR S T+SL+ER D ++V++VS IYGIG+   Y QMI+ L+  D +  +++++ LV+ Q
Sbjct: 139 QMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTLRERDRIPHRDVIARLVQMQ 198

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R DI   RGTFRV GD+I++FP+   D A R+ MF ++IE +  F PLTG+ ++ +  
Sbjct: 199 YSRNDIDFSRGTFRVRGDTIDVFPAENADYALRIEMFDDEIESLHFFDPLTGKVLQKIPR 258

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             IY  SHYVTPR T+  A++ IK EL  R     + G+ +E QR+EQR  +DLEM+   
Sbjct: 259 FTIYPGSHYVTPRETVLRAIETIKAELIERKDWFRENGKYIEEQRIEQRTRFDLEMMHEL 318

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G  + IENYSR+LTG  PG+PPPTL +Y+P D+L+F+DESHV I Q++GMY GD  RK  
Sbjct: 319 GFTKGIENYSRHLTGMKPGDPPPTLVDYLPSDALMFLDESHVMIGQLNGMYNGDRSRKTN 378

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPLRF+E+      ++ VSATP ++EL    G +VEQ++RPTGLVD
Sbjct: 379 LVDYGFRLPSALDNRPLRFDEFEGKMRQSVFVSATPANYELTHS-GQVVEQLVRPTGLVD 437

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P ++++ A TQV+D+  EI+   ++  R+L+T LTKRMAE LT++L E  +RVRY+HS++
Sbjct: 438 PVIQVKPASTQVDDLLAEIHDRVEKSERVLVTTLTKRMAEQLTDFLSENGVRVRYLHSDI 497

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 498 DTVERVEIVRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 557

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN+N   ILYAD +T S++ AIDET RRR KQL +NK+HNI P+ + ++I ++ID +
Sbjct: 558 RAARNLNGTAILYADKMTDSMKKAIDETERRRAKQLAYNKEHNITPEGIIKEIRDLIDGV 617

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                +   + +    AQ   +S+K+    +K L KQM   A NL FE+AA+ RD++  L
Sbjct: 618 FHPQDSLQELQVADDQAQYDVMSEKQLGKEIKKLEKQMQDYAKNLEFEKAAQTRDQLHLL 677

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 678 RERAFGAAVID 688


>gi|330446481|ref|ZP_08310133.1| excinuclease ABC, B subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490672|dbj|GAA04630.1| excinuclease ABC, B subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 675

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/669 (54%), Positives = 482/669 (72%), Gaps = 10/669 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + ++Y PSGDQP AI QL+ G+ S    Q LLGVTGSGKTFT+A VI    RP +++
Sbjct: 4   LFSLASEYSPSGDQPTAIEQLVDGLDSGLAHQTLLGVTGSGKTFTVANVIAQANRPTLIL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR
Sbjct: 64  APNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+++SVS IYG+G  +SY +M++ ++ GD ++Q+++L  L + QY R
Sbjct: 124 LSATKALMERRDVIIIASVSAIYGLGDPDSYLKMMLHVRRGDFLDQRDILRRLAELQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIK 378
            D+   RGTFRV G+ I+IFP+  E  A R+ +F +++E IS F PLTG  I R++    
Sbjct: 184 NDVAFERGTFRVRGEVIDIFPAESEKEAIRLELFDDEVECISSFDPLTGSVIQRDLPRTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  A++ IK+EL +R  +     +L+E QR+ QR  +D+EM+   G 
Sbjct: 244 IYPKTHYVTPREKILEAIEGIKKELIVRKEQFISNNKLVEEQRISQRTQFDIEMMNELGF 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+ QI  MYRGD  RK  L 
Sbjct: 304 CSGIENYSRYLSGRAEGEPPPTLFDYLPADGLLIIDESHVTVSQIGAMYRGDRSRKENLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+    I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPMKFEEFESLAPQTIYVSATPGNYELEKSSNDIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI++   +  R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ T
Sbjct: 424 IEVRPVATQVDDLLSEIHIREAKNERVLVTTLTKRMAEDLTEYLTEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  K ILY D IT S++ AI+ET RRREKQ E+N KH I PQ + +KI ++++    
Sbjct: 544 ARNIEGKAILYGDRITGSMERAINETQRRREKQTEYNLKHGITPQKLNKKIGDILELGGA 603

Query: 739 EDAATTN---------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
              A +                  +L+ ++ ++ +++L KQM+  A NL FE+AA  RD+
Sbjct: 604 NPRAKSRNRAADLHKVAETKGTYSTLTPQQLESQIQALEKQMYDFAQNLEFEQAAETRDK 663

Query: 790 IKRLKSSPY 798
           I++L+    
Sbjct: 664 IQKLREQFI 672


>gi|291525875|emb|CBK91462.1| excinuclease ABC, B subunit [Eubacterium rectale DSM 17629]
          Length = 660

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/657 (52%), Positives = 464/657 (70%), Gaps = 3/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL+KG     + + LLGVTGSGKTFTMA VI A+ +P ++++
Sbjct: 3   FKLHSKYKPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIAALNKPTLIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP++DTYI K+SS+N++ID++R 
Sbjct: 63  HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQSDTYIAKDSSVNDEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IVV+SVSCIYG+GS + ++ M + L+ G   ++ +L  +L+  QY R 
Sbjct: 123 SATAALTERKDVIVVASVSCIYGLGSPDEWTGMSISLRPGQERDRDDLARALIDLQYTRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD ++IFP++ +D A RV  FG++I+ I E   LTG+   ++E   I+
Sbjct: 183 DMDFHRGTFRVHGDVLDIFPANADDTAIRVEFFGDEIDRIVEVDVLTGEVKCSLEHTMIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  +  +N A   I++EL  R+   + E +L+EAQR+ +R  +D+EM+  TG C 
Sbjct: 243 PASHYVVSQEKINEACLNIEKELDERVKYFKGEDKLIEAQRIAERTNFDIEMMRETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L    PGEPP TL ++ P+D L+ VDESH+TIPQI GMY GD  RK TL +Y
Sbjct: 303 GIENYTRHLNFAKPGEPPMTLIDFFPDDFLIIVDESHITIPQIGGMYAGDRSRKTTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATP  +E E  + +  EQIIRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLNFEEFEGKIDQMLFVSATPNKYENEH-ELLRAEQIIRPTGLLDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N       ++L+T LTKRMAEDLT Y+ E  IRV+Y+HS++ TLE
Sbjct: 422 VRPVEGQIDDLVSEVNKETANHHKVLITTLTKRMAEDLTNYMAELGIRVKYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S+++AIDET RRR+ Q E+N+ H I PQ++++ + ++I   + + 
Sbjct: 542 NSEGHVIMYADKITDSMRVAIDETKRRRKVQEEYNEAHGITPQTIQKSVRDLI--AISKK 599

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            A    ++D    S+SKK+ + H+  + K+M  AA  LNFE AA  RD++  LK++ 
Sbjct: 600 VAADENALDKDPESMSKKELEKHIADIEKKMKKAAAELNFEAAAEYRDKLIMLKNTL 656


>gi|220904694|ref|YP_002480006.1| excinuclease ABC subunit B [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868993|gb|ACL49328.1| excinuclease ABC, B subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 678

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/668 (54%), Positives = 472/668 (70%), Gaps = 8/668 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F ++T Y P+GDQP AI +L+  + +    Q+LLGVTGSGKTFTMA VI    RPA+V
Sbjct: 7   TPFSLETAYAPTGDQPGAINELVANLQAGVPAQVLLGVTGSGKTFTMANVIARCNRPALV 66

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY EF+  FPHNAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ ID++
Sbjct: 67  LAPNKTLAAQLYGEFRALFPHNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKL 126

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R D I+V+SVSCIYG+GS E Y++M+V +++G       L++ LV+  Y+
Sbjct: 127 RHAATHALLTRRDVIIVASVSCIYGLGSPEYYAKMVVPVEVGQHFSMDRLITRLVEVHYE 186

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD++EI P++  + A R+  FG+DI+ + E  PLTG+ + +V    
Sbjct: 187 RNDYDFHRGTFRVRGDALEIIPAYHHERALRLEFFGDDIDSMREIDPLTGEVLADVSKTV 246

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SH+V+ +  L  A   I++EL  RL    ++G+L+EAQRLEQR   DLEM+E  G 
Sbjct: 247 IYPASHFVSAQDNLKRAAGDIRDELAERLTLFRQQGKLVEAQRLEQRTQLDLEMIEELGY 306

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENY+R+L GR  GEPP  L  Y PED LLFVDESH+TIPQ+ GMY+GD  RK TL 
Sbjct: 307 CNGIENYTRHLDGRVAGEPPSCLLNYFPEDFLLFVDESHITIPQVGGMYKGDRSRKQTLV 366

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL+F E+  L    + VSATPG +E++Q QGI+ EQIIRPTGLVDP 
Sbjct: 367 DYGFRLPSALDNRPLQFNEFTALLNQVVYVSATPGKYEMDQAQGIVAEQIIRPTGLVDPM 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R  + Q+ED+  E      +G R+L+T LTKRMAEDLTEY     +R RY+HS++ T
Sbjct: 427 VEVRPTKGQMEDLLGECRGCVSRGERVLVTTLTKRMAEDLTEYCCNMGVRARYLHSDIDT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER++IIR LRLG+FDVLVGINLLREGLDIPE  LV ILDADKEGFLRS  SLIQT GRA
Sbjct: 487 LERMQIIRALRLGEFDVLVGINLLREGLDIPEVSLVCILDADKEGFLRSTGSLIQTFGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV  +VILYAD +T S++ A+ ET RRR +Q E+N++H I P S ++ +   +D + +
Sbjct: 547 ARNVQGRVILYADKVTDSMKAAMSETARRRTRQTEYNEEHGITPVSTRKSLESPLDSLYV 606

Query: 739 EDAAT--------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           ED A+         +   DA    L+ +     +  L K+M  AA +L FE+AA++RD I
Sbjct: 607 EDGASRGRGKGRGKSKGQDADASPLTAEDTALLVARLEKEMRQAARDLEFEQAAQLRDRI 666

Query: 791 KRLKSSPY 798
           + L++   
Sbjct: 667 RVLRARLI 674


>gi|313108461|ref|ZP_07794465.1| excinuclease ABC subunit B [Pseudomonas aeruginosa 39016]
 gi|310880967|gb|EFQ39561.1| excinuclease ABC subunit B [Pseudomonas aeruginosa 39016]
          Length = 670

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/669 (55%), Positives = 483/669 (72%), Gaps = 9/669 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  FQ+ + + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +
Sbjct: 1   MDTFQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VS IYG+G   SY +M++ L  GD ++Q+ELL  L   QY
Sbjct: 121 MRLSATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+IFP+  +  A RV +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A+  IK ELK RL  L    +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNSNKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+  M++GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPLRFEEW  + P TI VSATPG +E E   G I+EQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRIIEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R A TQV+D+  +I     +  R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ 
Sbjct: 420 EIEVRPAMTQVDDLLSQIRQRVAKNERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN++ K ILYAD +T S+Q AIDET RRR KQ+  N+ H I P+ V++ I ++++  +
Sbjct: 540 AARNLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNQAHGIVPKGVRKDIKDILEGAV 599

Query: 738 LEDAATT--------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           +  A             S   +    S  +    ++ L ++M+  A +L FE AA++RDE
Sbjct: 600 VPGARGKRKGVAKVAEESGRYENELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRDE 659

Query: 790 IKRLKSSPY 798
           I+ L+    
Sbjct: 660 IQTLRERLV 668


>gi|159044735|ref|YP_001533529.1| excinuclease ABC subunit B [Dinoroseobacter shibae DFL 12]
 gi|157912495|gb|ABV93928.1| UvrABC system protein B [Dinoroseobacter shibae DFL 12]
          Length = 725

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/681 (62%), Positives = 530/681 (77%), Gaps = 6/681 (0%)

Query: 115 PLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLL 174
           P+L         R        +    F+M T + P+GDQP AIA+L +G+ + E+ Q+LL
Sbjct: 4   PVLHASADDVRTRP-----KLEGGRMFRMATSFEPAGDQPTAIAELSEGVRNGERDQVLL 58

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G TG+GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQP
Sbjct: 59  GATGTGKTFTMAKVIEQTQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQP 118

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           EAYVPR+DTYIEKES INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y  M 
Sbjct: 119 EAYVPRSDTYIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYEAMT 178

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             L  G S +Q+++++ LV QQY+R D G  RG+FRV GDS+EI+P+H+ED A + S FG
Sbjct: 179 QDLVAGQSYDQRQIMADLVAQQYRRNDAGFQRGSFRVRGDSLEIWPAHMEDRALKFSFFG 238

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
            ++E I+EF PLTG+K   ++ I+IYANSHYVTPRPTL  A+  IK+EL++RL +L  EG
Sbjct: 239 EELESITEFDPLTGEKADTLDRIRIYANSHYVTPRPTLQQAIVSIKKELRIRLDQLVAEG 298

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           +LLEAQRLEQR  +D+EMLE TG C  IENYSRYLTGR PGEPPPTLFEYIP+++++F D
Sbjct: 299 KLLEAQRLEQRTNFDIEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEYIPDNAIVFAD 358

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           ESHV++PQI GMY+GDF RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +
Sbjct: 359 ESHVSVPQIGGMYKGDFRRKMTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAA 418

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           WELEQ  G+  EQ+IRPTGL+DP VEIR    QV+D+ DE+      G R L+T LTKRM
Sbjct: 419 WELEQAGGVFTEQVIRPTGLLDPQVEIRPVEMQVDDLLDEVRRVTADGFRTLVTTLTKRM 478

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AEDLTEY++E+ I+VRYMHS++ TLERIEI+RDLRLG FDVL+GINLLREGLDIPECGLV
Sbjct: 479 AEDLTEYMHEQGIKVRYMHSDIDTLERIEILRDLRLGAFDVLIGINLLREGLDIPECGLV 538

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
           AILDADKEGFLRS+TSL+QTIGRAARN   +VI+YAD IT S++ A+ ET RRR KQ+ +
Sbjct: 539 AILDADKEGFLRSETSLVQTIGRAARNAEGRVIMYADRITGSMERALAETNRRRAKQIAY 598

Query: 715 NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLA 774
           N++H I P++VK+ + +V+  +   D     ++   ++  L     +  L+ LR  M  A
Sbjct: 599 NEEHGITPETVKKNVEDVMAGLYQGDVDMNRVTAKVEK-PLHGGNLETVLEGLRADMRKA 657

Query: 775 ADNLNFEEAARIRDEIKRLKS 795
           A+NL FEEAAR+RDE+KRL++
Sbjct: 658 AENLEFEEAARLRDEVKRLEA 678


>gi|223932268|ref|ZP_03624271.1| excinuclease ABC, B subunit [Streptococcus suis 89/1591]
 gi|330832850|ref|YP_004401675.1| UvrABC system protein B (UvrB protein) [Streptococcus suis ST3]
 gi|223898949|gb|EEF65307.1| excinuclease ABC, B subunit [Streptococcus suis 89/1591]
 gi|329307073|gb|AEB81489.1| UvrABC system protein B (UvrB protein) [Streptococcus suis ST3]
          Length = 661

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/655 (54%), Positives = 478/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI  L+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+SLV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGQEISRDQLLNSLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ + +V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGDVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    + TA+  I+ EL+ +L   E EG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMETAIAKIQAELEEQLKIFEAEGKLLEAQRLKQRTDYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ    +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQT-DTVVEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T+S++ A++ET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADKVTESMRKAMEETARRRQIQMAYNEEHGIIPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A T +        +L+K + KA +K L  QM  AA+ L+FE AA+IRD +  LK+
Sbjct: 606 AVTQDKEEVVDFNALNKDERKAMIKKLEGQMQEAAEVLDFELAAQIRDMVIELKN 660


>gi|158321280|ref|YP_001513787.1| excinuclease ABC subunit B [Alkaliphilus oremlandii OhILAs]
 gi|158141479|gb|ABW19791.1| excinuclease ABC, B subunit [Alkaliphilus oremlandii OhILAs]
          Length = 659

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/660 (55%), Positives = 483/660 (73%), Gaps = 2/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  FQ+ ++Y P+GDQP AI  L  GI+   K Q+LLGVTGSGKTFTMA VIE +Q+P +
Sbjct: 1   MEKFQIVSNYRPTGDQPKAIEALANGINKGTKHQVLLGVTGSGKTFTMANVIEKVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEFK FFP+NAVEYFVSYYDYYQPEAYV  +DTYIEK++SIN++ID+
Sbjct: 61  VIAHNKTLAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYVVTSDTYIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +LLER D I+V+SVSCIYG+G    Y  ++V L+ G    ++E+L  LV  QY
Sbjct: 121 LRHSATSALLERRDVIIVASVSCIYGLGDPTEYKNLMVSLRSGMEKSREEVLKQLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI  IRGTFRV GD +E+FP+   + A R+  FG++IE I E   LTG+ I   + +
Sbjct: 181 ERNDINFIRGTFRVRGDVVEVFPASSSENAIRLEFFGDEIERILEVNSLTGEIIGVRQHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHY T    +  A+K I+ EL+ R+ E + E +L+EAQR+ QR  YD+EML   G
Sbjct: 241 SIFPASHYATGADKVENAIKAIEVELEERIKEFKGEEKLIEAQRIGQRTMYDIEMLREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+LT R PG  P TL +Y PED L+ +DESHVT+PQI  MY GD  RK +L
Sbjct: 301 FCQGIENYSRHLTSREPGSRPYTLMDYFPEDYLIIIDESHVTVPQIRAMYGGDRSRKESL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS  DNRPL FEE+  L    + VSATPG +E+++ Q II EQ+IRPTGL+DP
Sbjct: 361 VNYGFRLPSAYDNRPLNFEEFEGLVNQIVYVSATPGPYEMDKTQNII-EQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            ++IR  + Q++D+  EI    ++  R+L+T LTK+M+EDLT+YL E  I+V+Y+HS++K
Sbjct: 420 IIDIRPIKGQIDDLVGEIRKRTEKNQRVLVTTLTKKMSEDLTDYLKEIQIKVKYLHSDIK 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+  KVI+YAD IT+S+Q+AIDET RRR+ Q E+N  HNI P+S+++ I +VI+   
Sbjct: 540 AARNLEGKVIMYADRITRSMQVAIDETNRRRKLQEEYNIAHNIQPKSIEKGIRDVIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + +        +A + +LSK++ +  L+ L  +M  AA +L FE AA +RD+I+ L++  
Sbjct: 600 VAEE-EVKYGKEASKNNLSKEELEKVLQDLETEMLQAATDLQFERAAELRDKIQSLRAQQ 658


>gi|119897902|ref|YP_933115.1| excinuclease ABC subunit B [Azoarcus sp. BH72]
 gi|119670315|emb|CAL94228.1| excinuclease ABC subunit B [Azoarcus sp. BH72]
          Length = 691

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/685 (54%), Positives = 495/685 (72%), Gaps = 8/685 (1%)

Query: 122 IWTPHRSWSINN---HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTG 178
           + +P  S S +     + + + F++   + P+GDQP AI  L +G+      Q LLGVTG
Sbjct: 1   MQSPADSGSDSTAKVLTFEGSPFRLHQPFPPAGDQPEAIRLLCEGVEDGLMYQTLLGVTG 60

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           SGKT+TMA VI  M RPA+V+APNK LAAQLY+EF+ F P NAVEYFVSYYDYYQPEAYV
Sbjct: 61  SGKTYTMANVIARMGRPALVLAPNKTLAAQLYAEFREFLPENAVEYFVSYYDYYQPEAYV 120

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLK 298
           P+ D +IEK+SS+NE I++MR SAT+SL+ER D ++V++VSCIYGIG    Y  MI+ L+
Sbjct: 121 PQRDLFIEKDSSVNEHIEQMRLSATKSLMERRDVVIVATVSCIYGIGDPVDYHAMILHLR 180

Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358
            G+ V  ++L++ LV  QY R D+   RGTFRV GD I++FPS   ++A R+ MF ++IE
Sbjct: 181 EGERVSHRDLIARLVAMQYTRADLDFRRGTFRVRGDVIDVFPSENAELAVRIEMFDDEIE 240

Query: 359 EISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE 418
            ++ F PLTG   + +    +Y +SHYVTPR T+  A++ IKEELK R+   ++EG+L+E
Sbjct: 241 HLTLFDPLTGHLKQKLVRFTVYPSSHYVTPRATVLKAIEAIKEELKDRIAFFQREGKLVE 300

Query: 419 AQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHV 478
           AQRLEQR  +DLEML   G C+ IENYSR+L+GR PGEPPPTL +Y+P D+L+F+DESHV
Sbjct: 301 AQRLEQRTRFDLEMLNEMGFCKGIENYSRHLSGRGPGEPPPTLIDYLPADALMFIDESHV 360

Query: 479 TIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
            I Q+ GMY+GD  RK  L  YGFRLPS +DNRPL+FEE+  L P T+ VSATP ++E +
Sbjct: 361 AIGQVGGMYKGDRSRKENLVGYGFRLPSALDNRPLKFEEFERLMPQTVFVSATPAAYEAQ 420

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
             QG +VEQ++RPTGL+DP VEIR A TQV+D+  +I        R+L+TVLTKRMAEDL
Sbjct: 421 H-QGQVVEQVVRPTGLIDPVVEIRPATTQVDDLLAQIKTRIAVQERVLVTVLTKRMAEDL 479

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           T+YL +  I+VRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILD
Sbjct: 480 TDYLADNGIKVRYLHSDIDTVERVEIIRDLRLGQFDVLVGINLLREGLDIPEVSLVAILD 539

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH 718
           ADKEGFLRS+ SLIQTIGRAAR+++   ILYAD IT S++ AI ET RRR KQ+  N+ +
Sbjct: 540 ADKEGFLRSERSLIQTIGRAARHIHGTAILYADQITDSMRAAIGETERRRTKQIAFNEAN 599

Query: 719 NINPQSVKEKIMEVIDPILLEDAATTNIS----IDAQQLSLSKKKGKAHLKSLRKQMHLA 774
            I P++V ++I ++ID +   D A+ + +      A   ++ +K+    +K L K+M   
Sbjct: 600 GIVPRTVSKRIKDIIDGVYNADGASRDSARVGEARADYAAMDEKQLARAIKKLEKEMQEH 659

Query: 775 ADNLNFEEAARIRDEIKRLKSSPYF 799
           A NL FE+AA  RDE+ +L+   + 
Sbjct: 660 ARNLEFEKAAAARDELFKLRERAFG 684


>gi|296115082|ref|ZP_06833724.1| excinuclease ABC subunit B [Gluconacetobacter hansenii ATCC 23769]
 gi|295978419|gb|EFG85155.1| excinuclease ABC subunit B [Gluconacetobacter hansenii ATCC 23769]
          Length = 763

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/657 (63%), Positives = 527/657 (80%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + Y P+GDQP AI++L+ GI   E+ Q+LLGVTGSGKTFTMAKVIEA Q+P +V
Sbjct: 50  RLFKINSPYEPAGDQPTAISELVAGIEGGERDQVLLGVTGSGKTFTMAKVIEATQKPTLV 109

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK+S INEQIDRM
Sbjct: 110 LAPNKTLAAQLYAEMKEFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKDSQINEQIDRM 169

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT++LLERND I+V+SVSCIYGIGSVE+YS+M+V+L+ G S+++ +L+ +LV+ QY+
Sbjct: 170 RHAATQALLERNDVIIVASVSCIYGIGSVETYSRMVVRLESGGSIDRDQLVKALVELQYR 229

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D G  RGTFRV G+S++IFP   ED AWRV++FG++I+EI EF PLTG K  +++ I 
Sbjct: 230 RNDAGFQRGTFRVRGESVDIFPVQNEDRAWRVTLFGDEIDEIIEFDPLTGDKTADLQEIS 289

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IYANSHYVTPRPTLN A+  IK EL+ +L  L KEG+LLEA+RL+QR T+DLEM+ETTG 
Sbjct: 290 IYANSHYVTPRPTLNQAVTGIKAELRTQLEHLTKEGKLLEAERLQQRTTFDLEMIETTGV 349

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSRYL+GR PGEPPPTLFEY+PED+LL VDESHVT+PQI GM RGD+ RK+ LA
Sbjct: 350 CKGIENYSRYLSGRKPGEPPPTLFEYLPEDALLIVDESHVTVPQIGGMERGDYARKSVLA 409

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPSC+DNRPL+F EW+  RP +I VSATPG WE+++  G+  EQ+IRPTGL+DP 
Sbjct: 410 EFGFRLPSCLDNRPLKFGEWDAFRPQSIFVSATPGPWEMQRTGGVFAEQVIRPTGLIDPV 469

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
            ++R    QV+D+  E   A  +G R+L+T LTKRMAEDLTEY+ E  I+VRY+HS+V T
Sbjct: 470 TDMRPVTHQVDDLLAECRKAIGEGGRVLVTTLTKRMAEDLTEYMNEAGIKVRYLHSDVDT 529

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LERIEIIRDLRLG FDVL+GINLLREGLDIPEC LVAILDADKEGFLRS+TSLIQTIGRA
Sbjct: 530 LERIEIIRDLRLGAFDVLIGINLLREGLDIPECSLVAILDADKEGFLRSRTSLIQTIGRA 589

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV+ +V+LYAD +T S+  AI+ET RRREKQ   N++  I P+SV++ I EV+  +  
Sbjct: 590 ARNVDGRVLLYADKMTDSLAYAIEETARRREKQSLWNEERGITPRSVRKHIGEVLSSVFE 649

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +D  T + + +     +  K  K  +  L K+M  A+ +L FE AAR+RDEI+RL++
Sbjct: 650 QDYVTVSPTPEGDIKDMVGKDLKGAIADLEKRMRTASADLEFETAARLRDEIRRLEA 706


>gi|315221703|ref|ZP_07863619.1| excinuclease ABC subunit B [Streptococcus anginosus F0211]
 gi|315189190|gb|EFU22889.1| excinuclease ABC subunit B [Streptococcus anginosus F0211]
          Length = 662

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/655 (54%), Positives = 473/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI+ + +P +V+A
Sbjct: 10  FKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIQKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFMTNDENMEIAIGKIQAELEEQLAFFEKEGKLLEAQRLKQRTDYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ VDESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMVDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEREQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADTIT S+Q A+DET RRR+ Q+ +N++H I PQ+++++I ++I    +  
Sbjct: 549 NSEGHVIMYADTITDSMQKAMDETARRRQIQMAYNEEHGIVPQTIQKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +A  +        SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 SALPDKGEVVDIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|146320885|ref|YP_001200596.1| excinuclease ABC subunit B [Streptococcus suis 98HAH33]
 gi|253751793|ref|YP_003024934.1| UvrABC system protein B (UvrB protein) [Streptococcus suis SC84]
 gi|253753616|ref|YP_003026757.1| UvrABC system protein B (UvrB protein) [Streptococcus suis P1/7]
 gi|253755503|ref|YP_003028643.1| UvrABC system protein B (UvrB protein) [Streptococcus suis BM407]
 gi|189038005|sp|A4W1F7|UVRB_STRS2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|145691691|gb|ABP92196.1| Helicase subunit of the DNA excision repair complex [Streptococcus
           suis 98HAH33]
 gi|251816082|emb|CAZ51703.1| UvrABC system protein B (UvrB protein) [Streptococcus suis SC84]
 gi|251817967|emb|CAZ55747.1| UvrABC system protein B (UvrB protein) [Streptococcus suis BM407]
 gi|251819862|emb|CAR45877.1| UvrABC system protein B (UvrB protein) [Streptococcus suis P1/7]
 gi|292558361|gb|ADE31362.1| Excinuclease ABC, B subunit [Streptococcus suis GZ1]
 gi|319758141|gb|ADV70083.1| excinuclease ABC subunit B [Streptococcus suis JS14]
          Length = 661

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/655 (54%), Positives = 479/655 (73%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI  L+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYAPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL++LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGQEISRDQLLNALVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ + +V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGDVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    + TA+  I+ EL+ +L   E EG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMETAIAKIQAELEEQLKVFEAEGKLLEAQRLKQRTDYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T+S++ A++ET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADKVTESMRKAMEETARRRQIQMAYNEEHGIIPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A T +        +L+K + KA +K L  QM  AA+ L+FE AA+IRD +  LK+
Sbjct: 606 AVTQDKEEVVDFNALNKDERKAMIKKLEGQMQEAAEVLDFELAAQIRDMVIELKN 660


>gi|152985171|ref|YP_001347370.1| excinuclease ABC subunit B [Pseudomonas aeruginosa PA7]
 gi|150960329|gb|ABR82354.1| excinuclease ABC, B subunit [Pseudomonas aeruginosa PA7]
          Length = 670

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/669 (55%), Positives = 482/669 (72%), Gaps = 9/669 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  FQ+ + + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +
Sbjct: 1   MDTFQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VS IYG+G   SY +M++ L  GD ++Q+ELL  L   QY
Sbjct: 121 MRLSATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+IFP+  +  A RV +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A+  IK ELK RL  L    +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+  M++GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPLRFEEW  + P TI VSATPG +E E   G ++EQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R A TQV+D+  +I     +  R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ 
Sbjct: 420 EIEVRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRSGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN++ K ILYAD +T S+Q AIDET RRR KQ+  N+ H I P+ V++ I ++++  +
Sbjct: 540 AARNLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAV 599

Query: 738 LEDAATT--------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           +  A             S        S  +    ++ L ++M+  A +L FE AA++RDE
Sbjct: 600 VPGARGKRKGVAKVAEESGRYDNELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRDE 659

Query: 790 IKRLKSSPY 798
           I+ L+    
Sbjct: 660 IQTLRERLV 668


>gi|169826762|ref|YP_001696920.1| excinuclease ABC subunit B [Lysinibacillus sphaericus C3-41]
 gi|168991250|gb|ACA38790.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
           [Lysinibacillus sphaericus C3-41]
          Length = 659

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/657 (54%), Positives = 476/657 (72%), Gaps = 1/657 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +Q  Y P+GDQP AIA+L++G+ + ++ Q LLG TG+GKTFT++ VI+ +++P +
Sbjct: 1   MQTFDLQAPYQPNGDQPQAIAELVEGVKAGKRHQTLLGATGTGKTFTISNVIQQVKKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MA NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++ID+
Sbjct: 61  IMAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER+D I+++SVSCIYG+GS E Y +M+V ++ G  +E+ +LL  LV  QY
Sbjct: 121 LRHSATSALFERDDVIIIASVSCIYGLGSPEEYREMVVSIRTGMEIERNQLLRKLVDVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ + + E +
Sbjct: 181 ERNDVSFTRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEILSDREHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+VT    +  A++ I++EL+ RL  L  E +LLEAQRLEQR  YDLEM+   G
Sbjct: 241 AIFPASHFVTREEKMRKAIENIEKELEDRLALLRAEDKLLEAQRLEQRTRYDLEMMREMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LT R  G  P TL +Y PED LL VDESHVT+PQ+ GMY GD  RK  L
Sbjct: 301 FCSGIENYSRHLTLREAGATPYTLLDYFPEDFLLVVDESHVTLPQVRGMYNGDQARKGVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPLRFEE+       I VSATPG +ELE    +I +QIIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLRFEEYEARVHQAIYVSATPGPYELEHTPEMI-QQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R    Q++++ DEI     +  R+L+T LTK+M+EDLT YL E  ++V Y+HSE+K
Sbjct: 420 LIDVRPIEGQIDNLIDEIQDRIARDERVLVTTLTKKMSEDLTAYLKEMGLKVEYLHSEIK 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEIIR+LR G +DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TLERIEIIRELRKGTYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N  VI+YAD +T S++ A+DET RRR  Q+ +N++H I PQ++ +KI EVI    
Sbjct: 540 AARNANGHVIMYADHVTDSMKKALDETKRRRALQMAYNEEHGITPQTISKKIPEVIRATQ 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + +   + ++   +   L+K + +  L SL  +M  AA  L+FE AA +RD I  LK
Sbjct: 600 VAEEEESYVTKATKGKKLTKAEREQLLASLEIEMKEAAKALDFERAAELRDTIFELK 656


>gi|56478529|ref|YP_160118.1| excinuclease ABC subunit B [Aromatoleum aromaticum EbN1]
 gi|81821033|sp|Q5P0E7|UVRB_AZOSE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56314572|emb|CAI09217.1| Excinuclease ABC subunit B [Aromatoleum aromaticum EbN1]
          Length = 685

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/664 (55%), Positives = 484/664 (72%), Gaps = 4/664 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQPAAI  L +GI      Q LLGVTGSGKT+TMA VI    RPA+V
Sbjct: 16  SPFRLHQPFPPAGDQPAAIELLTEGIGDGLMYQTLLGVTGSGKTYTMANVIARCGRPALV 75

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++M
Sbjct: 76  LAPNKTLAAQLYAEFREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQM 135

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+SL+ER D ++V++VSCIYGIG    Y  MI+ L+ G+ +  ++L+  LV  QY 
Sbjct: 136 RLSATKSLMERRDVVIVATVSCIYGIGDPVDYHAMILHLREGERIAHRDLVQRLVAMQYT 195

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RGTFRV GD I++FP+   ++A R+ MF +++E ++ F PLTG   + +    
Sbjct: 196 RSDIDFRRGTFRVRGDVIDVFPAENAELAVRIEMFDDEVEHLTLFDPLTGHLKQKLVRFT 255

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +SHYVTPR T+  A++ IK+EL+ R    +  G+L+EAQR+EQR  +DLEML   G 
Sbjct: 256 VYPSSHYVTPRATVLKAIEAIKDELRDRSAWFQTSGKLVEAQRIEQRTRFDLEMLNEMGF 315

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+GR  GEPPPTL +Y+P D+LLFVDESHV+IPQ+ GMY+GD  RK  L 
Sbjct: 316 CKGIENYSRHLSGRGQGEPPPTLIDYLPSDALLFVDESHVSIPQVGGMYKGDRSRKENLV 375

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            YGFRLPS +DNRPL+FEE+  L P TI VSATP ++E E  QG +VEQ++RPTGL+DP 
Sbjct: 376 GYGFRLPSALDNRPLKFEEFERLMPQTIFVSATPSTYEAEH-QGQVVEQVVRPTGLIDPA 434

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +++R A TQV+D+  E       G R+L+T LTKRMAEDLT+YL E  IRVRY+HS++ T
Sbjct: 435 IDVRPATTQVDDLLSEAKRRIAVGERVLVTTLTKRMAEDLTDYLAENGIRVRYLHSDIDT 494

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 495 VERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 554

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           AR++N + ILYAD +T+S++ AIDET RRR KQ+  N+ + I P++V ++I ++ID +  
Sbjct: 555 ARHINGRAILYADVVTRSMRAAIDETERRRVKQIAFNQANGIVPKTVSKRIKDIIDGVYG 614

Query: 739 EDAATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            D      S+     +  S+++K     ++ L K+M   A NL FE+AA  RDE+ RL+ 
Sbjct: 615 GDVERDGRSVAEPPPEYFSMNEKTVAKSIRKLEKEMQEHARNLEFEKAAAARDELFRLRQ 674

Query: 796 SPYF 799
             + 
Sbjct: 675 RTFG 678


>gi|91762788|ref|ZP_01264753.1| excinuclease ABC subunit B [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718590|gb|EAS85240.1| excinuclease ABC subunit B [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 723

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/672 (62%), Positives = 528/672 (78%), Gaps = 6/672 (0%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
           ++  I+   +    F++ TD+ P+GDQP AI +L+KG +  E  Q+LLGVTGSGKTFTMA
Sbjct: 15  KNPEIHQKLEGGQKFKLVTDFKPAGDQPEAIKKLVKGANKEELSQVLLGVTGSGKTFTMA 74

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
           +VIE   RPA+++APNK LAAQLY E K+FFP NAVEYFVSYYDYY PEAYVPR+DTYIE
Sbjct: 75  QVIERTNRPALILAPNKTLAAQLYGEMKSFFPENAVEYFVSYYDYYTPEAYVPRSDTYIE 134

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           KE+SINEQIDRMRHSATRSLLER+D I+VSSVSCIYG+GSVE+YS+M + LK      ++
Sbjct: 135 KEASINEQIDRMRHSATRSLLERDDVIIVSSVSCIYGLGSVEAYSKMTLSLKKDYDYNRE 194

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +L+ +LV  QYKR D    RGTFR  G+ IEIFPSHLED AWR+S+FG+ +E+I EF PL
Sbjct: 195 QLIKTLVHLQYKRNDQSFYRGTFRARGEYIEIFPSHLEDRAWRLSLFGDKLEKIEEFDPL 254

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG  +++++ IK+YANSHY+TP+PT+  A+  IK EL++ L + +++ +LLEAQRLE+R 
Sbjct: 255 TGDLLKDLDVIKVYANSHYITPKPTIEQAVIKIKRELEVTLKKFKEQNKLLEAQRLEERT 314

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
            +DLEM+E TGSC  IENYSR+L+GR PGEPPPTLFEY P+++L+FVDE HVT+PQ++GM
Sbjct: 315 KFDLEMIEATGSCAGIENYSRFLSGRKPGEPPPTLFEYFPDNTLIFVDECHVTVPQLNGM 374

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           Y+GD  RK+ LAEYGFRLPSCMDNRPL+FEEW+ +R  T+ VSATPG WELEQ +G  VE
Sbjct: 375 YKGDRSRKSNLAEYGFRLPSCMDNRPLKFEEWDAMRTQTVFVSATPGPWELEQTKGKFVE 434

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           QIIRPTGL+DPPVEI+ A+ QV+DV  E      +  R+L+T LTK+MAEDLTEY +E  
Sbjct: 435 QIIRPTGLIDPPVEIKPAKNQVDDVMHECKKTIDKNFRVLITTLTKKMAEDLTEYFHENG 494

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           IRVRY+HS++ TLERIEI+RDLRLG FDVLVGINLLREGLDIPEC LVAILDADKEGFLR
Sbjct: 495 IRVRYLHSDIDTLERIEIMRDLRLGVFDVLVGINLLREGLDIPECALVAILDADKEGFLR 554

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S+TSLIQTIGRAARN++ +VILYAD  TKSI+ AI ET RRR  Q+ +NKKHNI+  S+K
Sbjct: 555 SETSLIQTIGRAARNLDGRVILYADKETKSIKKAIQETDRRRTIQVAYNKKHNIDATSIK 614

Query: 727 EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           ++I +V++ +  +D        +           K HLK L K+M  AA NL FEEAA+I
Sbjct: 615 KEISDVLESVYEKDYLKVGTGDNIGG------NLKKHLKQLNKRMKDAATNLEFEEAAKI 668

Query: 787 RDEIKRLKSSPY 798
           RDEI+ L++S  
Sbjct: 669 RDEIRNLEASEL 680


>gi|171779931|ref|ZP_02920835.1| hypothetical protein STRINF_01718 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281279|gb|EDT46714.1| hypothetical protein STRINF_01718 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 663

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/655 (54%), Positives = 475/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYEPSGDQPQAIETLVNNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ + +VE + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGDVEHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A++ I  E++ ++ + E EG+L+EAQR+ QR  YD+EML   G   
Sbjct: 250 PATHFMTNEEHMEEAIQKILAEMEDQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS Y+ GR+ GEPP TL ++ PED L+ VDESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSSYMDGRSEGEPPFTLLDFFPEDFLIMVDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +ELEQ    +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYELEQT-DTVVEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT+S+Q A+DET RRR+ Q+ +N++H I PQ++K++I ++I      D
Sbjct: 549 NSEGHVIMYADKITESMQKAMDETARRRKIQMRYNEEHGIVPQTIKKEIRDLISISKATD 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                 + D    S++K + K  +K L+KQMH AA+ L+FE AA++RD +  LK+
Sbjct: 609 TEVAEDTPD--YSSMNKAERKDAIKKLQKQMHEAAEMLDFELAAQLRDMVLELKA 661


>gi|28377628|ref|NP_784520.1| excinuclease ABC subunit B [Lactobacillus plantarum WCFS1]
 gi|254555807|ref|YP_003062224.1| excinuclease ABC subunit B [Lactobacillus plantarum JDM1]
 gi|300767596|ref|ZP_07077506.1| excision endonuclease subunit UvrB [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308179788|ref|YP_003923916.1| excinuclease ABC subunit B [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|38258759|sp|Q88YI8|UVRB_LACPL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|28270461|emb|CAD63363.1| excinuclease ABC, subunit B [Lactobacillus plantarum WCFS1]
 gi|254044734|gb|ACT61527.1| excinuclease ABC subunit B [Lactobacillus plantarum JDM1]
 gi|300494581|gb|EFK29739.1| excision endonuclease subunit UvrB [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308045279|gb|ADN97822.1| excinuclease ABC subunit B [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 667

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/662 (53%), Positives = 475/662 (71%), Gaps = 2/662 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D   F + +DY P+GDQP AI QL  GI S EK Q+LLG TG+GKTFT++ VI  + +P 
Sbjct: 6   DNNHFDLVSDYQPTGDQPQAIQQLTAGIESGEKEQILLGATGTGKTFTISNVIAKVNKPT 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           ++++ NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID
Sbjct: 66  LILSHNKTLAGQLYGEFKKFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEID 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++RHSAT SLLERND IVV+SVS I+G+G    Y   +V L++G  +++ +LL  LV  Q
Sbjct: 126 KLRHSATSSLLERNDVIVVASVSSIFGLGDPHEYQDHVVSLRVGMEIDRNDLLRKLVDIQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           + R DI   RG FRV GD +EIFP+  +D A RV  FG++I+ I E   LTG+ + + E 
Sbjct: 186 FDRNDIDFQRGRFRVHGDVVEIFPASRDDHALRVEFFGDEIDRIREIDALTGEIVADREH 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           + I+  +H++T    +  A+K I++EL  RL EL  +G+LLEAQRL+QR TYD+EML+  
Sbjct: 246 VAIFPATHFMTNDAIMEHAIKGIEDELDGRLKELTADGKLLEAQRLKQRTTYDVEMLKEM 305

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G    IENYSR++ GR PGEPP TL ++ P+D LL VDESHVT+PQ+ GMY GD  RK  
Sbjct: 306 GYTSGIENYSRFMDGRKPGEPPYTLLDFFPKDFLLVVDESHVTMPQVRGMYNGDRARKQM 365

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL+ EE        + +SATPG +E+++ +  +V+QIIRPTGL+D
Sbjct: 366 LVDYGFRLPSALDNRPLKLEEVEQHINQVVYMSATPGPYEMDRTK-HVVQQIIRPTGLLD 424

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R    Q++D+  EIN   +   R+ +T LTK+MAEDLT+Y  +  I+VRY+HS++
Sbjct: 425 PTIEVRPIMGQIDDLVGEINKRIEVNERVFITTLTKKMAEDLTDYFKDLGIKVRYLHSDI 484

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           KTLER +IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 485 KTLERTQIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIG 544

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN +  VI+YADT T S+Q A+DET RRR  Q+++N+ H+I P ++K+ I E+I   
Sbjct: 545 RAARNEHGSVIMYADTTTDSMQAAMDETARRRAVQMKYNEDHHITPHTIKKAIPELIAST 604

Query: 737 L-LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              EDA   +  ++     +++++    +  L +QM  AA  L+FE+AA +RD +  LK+
Sbjct: 605 KTTEDAGKKDDFLETDFDDMTREQQLDMISKLEEQMKTAAKKLDFEQAATLRDTVMELKA 664

Query: 796 SP 797
             
Sbjct: 665 QI 666


>gi|83944406|ref|ZP_00956860.1| UvrABC system protein B [Sulfitobacter sp. EE-36]
 gi|83844729|gb|EAP82612.1| UvrABC system protein B [Sulfitobacter sp. EE-36]
          Length = 738

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/690 (61%), Positives = 536/690 (77%), Gaps = 1/690 (0%)

Query: 106 LARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH 165
           +A       P  K+  +  P  +       +    F++ T++ P+GDQP AI +L +G+ 
Sbjct: 1   MAYAHSDSLPERKDAYLANPAPNVRERPKLEGGKKFKLATEFEPAGDQPTAIKELSEGVR 60

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           S E+ Q+LLG TG+GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP NAVEYF
Sbjct: 61  SGERDQVLLGATGTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYF 120

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
           VSYYDYYQPEAYV R+DT+IEKES INEQIDRMRHSATR+LLER+D I+++SVSCIYGIG
Sbjct: 121 VSYYDYYQPEAYVARSDTFIEKESQINEQIDRMRHSATRALLERDDVIIIASVSCIYGIG 180

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           SVE+Y  M   LK G++ +Q+++++ L+ Q YKR D    RGTFRV GDS+EIFP+HLED
Sbjct: 181 SVETYGAMTQDLKTGNNYDQRQVIADLIAQAYKRNDAAFQRGTFRVRGDSLEIFPAHLED 240

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
            AWR+S FG ++E I+EF PLTG+K  + + I++YANSHYVTP+PT+N A+  IK+EL+M
Sbjct: 241 RAWRLSFFGEELESITEFDPLTGEKTGSFDQIRVYANSHYVTPKPTMNQAVIGIKKELRM 300

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           RL +L  EG+LLEAQRLEQR  +D+EMLE TG C  IENYSRYLTGR PGEPPPTLFE+I
Sbjct: 301 RLDQLVAEGKLLEAQRLEQRCNFDIEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFI 360

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
           P+++++F DESHV++PQI GMY+GD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP +
Sbjct: 361 PDNAIVFADESHVSVPQIGGMYKGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQS 420

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
           + VSATP +WE+EQ  G+  EQIIRPTGL+DP +EIR    QV+D+ DE+   A  G R 
Sbjct: 421 VFVSATPAAWEIEQSGGVFTEQIIRPTGLIDPKIEIRPVEMQVDDLLDEVRKVAADGYRT 480

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L TVLTKRMAEDLTEY++E+ IRVRYMHS++ T+ERIEI+RDLRLG FDVL+GINLLREG
Sbjct: 481 LCTVLTKRMAEDLTEYMHEQGIRVRYMHSDIDTIERIEILRDLRLGAFDVLIGINLLREG 540

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARN   +VI+YAD IT S++ AI ET 
Sbjct: 541 LDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNAEGRVIMYADRITGSMERAIGETD 600

Query: 706 RRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
           RRR KQL +N++H I P +VK+ + +++  +   D   + ++   +   L+    +  L 
Sbjct: 601 RRRAKQLAYNEEHGITPTTVKKNVDDILAGLYKGDVDMSRVTAKIE-NPLAGGNLQTVLD 659

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            LR  M  AA+NL FEEAAR+RDE+KRL+S
Sbjct: 660 GLRTDMRRAAENLEFEEAARLRDEVKRLES 689


>gi|114800055|ref|YP_761722.1| excinuclease ABC subunit B [Hyphomonas neptunium ATCC 15444]
 gi|114740229|gb|ABI78354.1| excinuclease ABC, B subunit [Hyphomonas neptunium ATCC 15444]
          Length = 681

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/679 (61%), Positives = 527/679 (77%), Gaps = 13/679 (1%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +    F++  +Y P+GDQ  AI +L++GI + E+ Q+LLG TG+GKTFTMAK+IEA Q
Sbjct: 2   KLEGGKRFRVAAEYEPAGDQRTAIPELVEGITAGERDQVLLGATGTGKTFTMAKIIEATQ 61

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPA+++APNK LAAQLY EFK+FFP N+VEYFVSYYDYYQPEAYVPR+D YIEKESSINE
Sbjct: 62  RPALILAPNKTLAAQLYGEFKSFFPDNSVEYFVSYYDYYQPEAYVPRSDLYIEKESSINE 121

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
            IDRMRHSATR++LER+D I+VSSVSC+YGIGSVESY+ M   LK GD ++ K++ + LV
Sbjct: 122 AIDRMRHSATRAILERDDVIIVSSVSCLYGIGSVESYTSMTFTLKAGDRIDPKQVTARLV 181

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R D+   RG FRV GD I+IFP+H ED AW++S FG+++E I+EF PLTG+ ++ 
Sbjct: 182 ANQYTRNDVAFGRGAFRVKGDVIDIFPAHYEDRAWKLSFFGDELESITEFDPLTGRTMQK 241

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           +  +KIYANSH+VTPRPTLN A++ IK ELK  +   EK G+LLEAQR+EQR TYDLEML
Sbjct: 242 LPQVKIYANSHHVTPRPTLNQAIEKIKAELKTTIAHFEKNGKLLEAQRIEQRCTYDLEML 301

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
             TGSC  IENYSRYLTGR PGEPPPTLFEY+PE++L+F DESH TIPQI  M++GDF R
Sbjct: 302 AATGSCNGIENYSRYLTGRKPGEPPPTLFEYLPENALVFTDESHQTIPQIGAMFKGDFSR 361

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K+TLAEYGFRLPSC+DNRPL+F+EW+ +RP T+ VSATPG WE+E+  G+  EQ+IRPTG
Sbjct: 362 KSTLAEYGFRLPSCIDNRPLKFDEWDAMRPQTVHVSATPGKWEMERTGGVFTEQVIRPTG 421

Query: 554 LVDPPVEIRSAR----TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           L+DPPVE+R        QV+D+  E   AA  G+R L+T LTK+MAE+LT++L+E  ++V
Sbjct: 422 LIDPPVEVRPVSNDGANQVDDIMAEAKTAAANGMRTLITTLTKKMAENLTDFLHENGVKV 481

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           RYMHS+V T+ERIEIIRDLRLG FDVLVGINLLREGLDIPECGLV ILDADKEGFLRS+T
Sbjct: 482 RYMHSDVDTIERIEIIRDLRLGVFDVLVGINLLREGLDIPECGLVGILDADKEGFLRSET 541

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           SL+QTIGRAARN ++KVILYAD +T S+Q A+DET+RRREKQ+ +N +H I P ++K  +
Sbjct: 542 SLVQTIGRAARNADAKVILYADRVTGSMQRAMDETSRRREKQMAYNIEHGITPTTIKRAV 601

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLSK---------KKGKAHLKSLRKQMHLAADNLNF 780
            +++  +  + +A+ +     + +S  K            KA + SL KQM  AA NL F
Sbjct: 602 SDILSELGEKPSASRSRRNRERGVSEEKPLPLRGETGHNLKAAIASLEKQMREAAANLEF 661

Query: 781 EEAARIRDEIKRLKSSPYF 799
           E AAR+RDE+KRL+     
Sbjct: 662 ETAARLRDEVKRLREEDLG 680


>gi|160875272|ref|YP_001554588.1| excinuclease ABC subunit B [Shewanella baltica OS195]
 gi|160860794|gb|ABX49328.1| excinuclease ABC, B subunit [Shewanella baltica OS195]
 gi|315267466|gb|ADT94319.1| excinuclease ABC, B subunit [Shewanella baltica OS678]
          Length = 668

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/659 (55%), Positives = 480/659 (72%), Gaps = 3/659 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ + P+GDQP AIA+L+ G+ +    Q LLGVTGSGKTFT+A VI+ + RP I+
Sbjct: 4   SVFQLESQFAPAGDQPTAIAKLVDGLEAGLACQTLLGVTGSGKTFTIANVIQKLGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QYK
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDVMGQRDILIRLSELQYK 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGT+RV G+ I++FP+  E  A RV +F ++IE +SEF PLTG  I+ +    
Sbjct: 184 RNDIELQRGTYRVRGEVIDVFPADSERNAIRVELFDDEIERLSEFDPLTGHIIKRIARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A ++IKEEL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKTHYVTPREKIIAATEFIKEELRERKQFLLDNNKLIEAQRIHERVQYDVEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP  +ELE+ +G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPSVYELEKSEGEIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI        R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVGTQVDDLLSEIAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD IT S+  AI ET RRRE+Q  HN KH I P+ V ++I +V+D    
Sbjct: 544 ARNVNGKVILYADRITNSMAKAIGETDRRRERQRAHNLKHGITPKGVVKRITDVMDVDDG 603

Query: 739 EDAATTN---ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            D+           +        +    +  L K+MH  A NL FE+AA +RDE+K L+
Sbjct: 604 RDSKAVYGKVAEPKSHYHKADATELSHQIDQLEKKMHEYARNLEFEQAAAMRDEVKHLR 662


>gi|167854602|ref|ZP_02477383.1| hypothetical protein HPS_02459 [Haemophilus parasuis 29755]
 gi|167854357|gb|EDS25590.1| hypothetical protein HPS_02459 [Haemophilus parasuis 29755]
          Length = 671

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/666 (56%), Positives = 488/666 (73%), Gaps = 6/666 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           SK    F + + + PSGDQP AIA+L++G++     Q LLGVTGSGKTFT+A VI  + R
Sbjct: 2   SKQGKPFILHSPFKPSGDQPTAIAKLVEGLNDGLAHQTLLGVTGSGKTFTIANVIATLNR 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PA+V+APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQ
Sbjct: 62  PAMVLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQ 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT+S LER D IVV+SVS IYG+G V++Y QM++ L++G+ ++Q+++LS L +
Sbjct: 122 IEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQMMLHLQVGEMIDQRKILSRLAE 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    R TFRV G+ I+IFP+  + VA RV +F ++IE +S F PLTG  +  V
Sbjct: 182 LQYTRNDQAFQRATFRVRGEVIDIFPAESDGVALRVELFDDEIENLSLFDPLTGHNLGRV 241

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               IY  +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+ 
Sbjct: 242 PRYTIYPKTHYVTPRDRILEAIEQIKKELAERRTYFIKENKLLEEQRIAQRTQFDIEMMN 301

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GM+RGD  RK
Sbjct: 302 ELGYCSGIENYSRYLSGRKEGEPPPTLFDYMPSDGLLIIDESHVTVPQIGGMFRGDRARK 361

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    +++Q++RPTGL
Sbjct: 362 ETLVQYGFRLPSALDNRPLRFEEFERLSPQTIYVSATPGPYELEK-NPDVIDQVVRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+R   TQV+D+  EI+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS
Sbjct: 421 LDPIIEVRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 481 DIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN+N K ILY D IT S+Q AI ET RRREKQ ++N++H I PQ++ +K+ E++D
Sbjct: 541 IGRAARNLNGKAILYGDRITNSMQKAITETERRREKQQKYNEEHGIVPQALNKKVGELLD 600

Query: 735 PILLEDAATTNISIDAQQL-----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
               +    +  S  +          S+K+ +  LK L +QM   A +L FE+AA +RD+
Sbjct: 601 IGQTDKPKRSKKSAKSSDDQTAYTPKSRKELEKELKVLEQQMRDFAKDLEFEKAAAVRDK 660

Query: 790 IKRLKS 795
           I +LK+
Sbjct: 661 IHQLKA 666


>gi|84502900|ref|ZP_01001013.1| UvrABC system protein B [Oceanicola batsensis HTCC2597]
 gi|84388883|gb|EAQ01753.1| UvrABC system protein B [Oceanicola batsensis HTCC2597]
          Length = 727

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/679 (62%), Positives = 528/679 (77%), Gaps = 1/679 (0%)

Query: 117 LKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGV 176
           +    +             +      M T++ P+GDQP AIA+L  GI   E+ Q+LLG 
Sbjct: 1   MTTTAMPETQEEVRARPKLEGGKRLVMNTEFDPAGDQPTAIAELSGGIDGGERDQVLLGA 60

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           TG+GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEA
Sbjct: 61  TGTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEA 120

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           YVPR+DTYIEKES INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   
Sbjct: 121 YVPRSDTYIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYGAMTQD 180

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK G + +Q+++++ LV QQY+R D    RG+FRV GDS+EIFP+HLED AWR+S FG +
Sbjct: 181 LKAGGTYDQRQVIADLVAQQYRRNDAAFQRGSFRVRGDSLEIFPAHLEDRAWRLSFFGEE 240

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           +E I+EF PLTG K    + I++YANSHYVTP+PT+  A+  IK+EL+ RL +L  EG+L
Sbjct: 241 LESITEFDPLTGTKTNTFDQIRVYANSHYVTPKPTMQQAVINIKKELRQRLDQLVGEGKL 300

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           LEAQRLEQR  +DLEMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+ +++F DES
Sbjct: 301 LEAQRLEQRTNFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDTAIVFADES 360

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536
           HV+IPQI GMYRGD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP +I VSATPG+WE
Sbjct: 361 HVSIPQIGGMYRGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSIYVSATPGNWE 420

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           +EQ  G+  EQ+IRPTGL+DP VEIR  + QV+D+ DE+     QG R L+T LTKRMAE
Sbjct: 421 MEQTGGVFTEQVIRPTGLLDPQVEIRPVKMQVDDLLDEVRKVTAQGFRTLVTTLTKRMAE 480

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DLTEY++E+ I+VRYMHS++ T+ERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAI
Sbjct: 481 DLTEYMHEQGIKVRYMHSDIDTIERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAI 540

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
           LDADKEGFLRS+TSLIQTIGRAARN   +VI+YAD+IT S++ A+ ET RRREKQ+ +N+
Sbjct: 541 LDADKEGFLRSETSLIQTIGRAARNAEGRVIMYADSITGSMERALAETERRREKQIAYNE 600

Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
           +H I P ++++ + +++  +   D     ++   ++  +     +AHL  LR  M  AA+
Sbjct: 601 EHGITPATIRKNVEDILAGLYKGDVDMNRVTAQVEK-PMVGANLQAHLDGLRADMRKAAE 659

Query: 777 NLNFEEAARIRDEIKRLKS 795
           NL FEEAAR+RDE+KRL++
Sbjct: 660 NLEFEEAARLRDEVKRLEA 678


>gi|121535499|ref|ZP_01667308.1| excinuclease ABC, B subunit [Thermosinus carboxydivorans Nor1]
 gi|121305918|gb|EAX46851.1| excinuclease ABC, B subunit [Thermosinus carboxydivorans Nor1]
          Length = 697

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/670 (54%), Positives = 473/670 (70%), Gaps = 3/670 (0%)

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
                 + +    FQ+   + P+GDQP AI  L +GI   E+ Q+LLG TG+GKTFT+AK
Sbjct: 5   PKLRTTYQEGGIPFQVVAPFVPTGDQPQAIEALAEGIFRGERAQVLLGATGTGKTFTIAK 64

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
            IE +Q+P +V+A NK LAAQL SEFK FFPHNAVEYFVSYYDYYQPEAY+P+TDTYIEK
Sbjct: 65  TIEKVQKPTLVIAHNKTLAAQLASEFKEFFPHNAVEYFVSYYDYYQPEAYIPQTDTYIEK 124

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           ++SIN++ID++RHSAT +L ER D I+V+SVSCIYG+GS + Y  +++ L+ G   ++ E
Sbjct: 125 DASINDEIDKLRHSATSALFERRDVIIVASVSCIYGLGSPDEYRGLVLSLRQGQVRDRDE 184

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           +L  LV+ QY+R D+   RG FRV GD IEIFP+   + A RV +FG+++E I E   LT
Sbjct: 185 ILRKLVEIQYERNDVNFTRGKFRVRGDVIEIFPAAYGEQAVRVELFGDEVERILEIDTLT 244

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           G+ +   + I IY  SHYVT R  +  A+  I++EL+ RL EL   G+LLEAQRLEQR  
Sbjct: 245 GEILAERKHIAIYPASHYVTTRENMLRAIADIEKELEERLAELRAAGKLLEAQRLEQRTR 304

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           YD+EM+   G C  IENYSR++TGR PGE P TL +Y P+D LL +DESHVT+PQ+  MY
Sbjct: 305 YDMEMMLEMGYCSGIENYSRHITGRKPGEAPYTLLDYFPDDFLLVIDESHVTLPQVRAMY 364

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
            GD  RK  L E+GFRLPS  DNRPL F+E+       I VSATPG +EL+     +V+Q
Sbjct: 365 NGDKSRKDMLVEHGFRLPSAYDNRPLTFDEFVQRINQVIYVSATPGPYELKTS-TRVVQQ 423

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           IIRPTGLVDP VE+R  + Q++D+  EI   A    R+L+T LTK+MAEDLTE+L E  +
Sbjct: 424 IIRPTGLVDPEVEVRPIKGQMDDLLGEIKARAAANERVLVTTLTKKMAEDLTEFLREMGV 483

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RVRY+HSE+ T+ER +IIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS
Sbjct: 484 RVRYLHSEIATIERADIIRDLRAGAFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRS 543

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           +TSLIQTIGRAARNV+ KVI+YADTIT S++ AIDET RRR  Q  +N+ H I PQ+V++
Sbjct: 544 ETSLIQTIGRAARNVHGKVIMYADTITDSMRRAIDETNRRRAIQQAYNEAHGITPQTVRK 603

Query: 728 KIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           ++ E+I+   + +  T       +   +++ +      +L KQM  AA NL FE AA +R
Sbjct: 604 RVKELIETTKVAE--TPAEYKADRLAGMTRTEMLDLAANLEKQMRQAAKNLEFERAAELR 661

Query: 788 DEIKRLKSSP 797
           D +  LK   
Sbjct: 662 DMLIELKQRL 671


>gi|325982186|ref|YP_004294588.1| UvrABC system protein B [Nitrosomonas sp. AL212]
 gi|325531705|gb|ADZ26426.1| UvrABC system protein B [Nitrosomonas sp. AL212]
          Length = 676

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/664 (55%), Positives = 500/664 (75%), Gaps = 4/664 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQPAAIAQL++GI+     Q LLGVTGSGKT+T+A +I    RPAI+
Sbjct: 8   SPFKLHQAFAPAGDQPAAIAQLIEGINDGLAFQTLLGVTGSGKTYTIANMIAHSGRPAIL 67

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+E + FFP NA+EYFVSYYDYYQPEAYVP  D +IEK+SSINE I++M
Sbjct: 68  IAPNKTLAAQLYAEMREFFPENAIEYFVSYYDYYQPEAYVPARDLFIEKDSSINEHIEQM 127

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+SLLER+D I+V++VSCIYGIG    Y  MI+ L+ G+ + Q++++  L + QY+
Sbjct: 128 RLSATKSLLERDDAIIVATVSCIYGIGDPVDYHGMILHLRSGEKISQRDVIKRLTEMQYE 187

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R ++   RG FRV GD ++IFP+   + A RVS+F ++++ +S F PLTG+ ++ +    
Sbjct: 188 RNELEFKRGVFRVRGDVVDIFPAENSEAAVRVSLFDDEVDNLSLFDPLTGRMLQKLSRFT 247

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +SHYVTPR T   AM+ IK+EL+ RL    +E RL+EAQRLEQR  +DLEML   G 
Sbjct: 248 VYPSSHYVTPRSTTLRAMETIKDELRERLEHYYQEHRLVEAQRLEQRTRFDLEMLNELGF 307

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+G+NPGEPPPTL +Y+P ++L+ +DESHVT+PQI GMY+GD  RK  L 
Sbjct: 308 CKGIENYSRHLSGKNPGEPPPTLLDYLPPNALMIIDESHVTVPQIGGMYKGDRSRKENLV 367

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            YGFRLPS +DNRPLRFEE+    P T+ VSATP ++E +   G IVEQ++RPTGLVDP 
Sbjct: 368 NYGFRLPSALDNRPLRFEEFEKRMPQTVFVSATPANYEHQHS-GQIVEQVVRPTGLVDPI 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  E++L   +  R+L+T LTKRMAEDLT+Y  +  I+VRY+HS++ T
Sbjct: 427 IEVRPVTTQVDDLMSEVHLRTAKNERVLVTTLTKRMAEDLTDYFSDHKIKVRYLHSDIDT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 487 VERVEIIRDLRLGQFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           AR++N   ILYA+TIT+S+++AIDET RRR+KQ++HN +H I P+SV ++I ++ID +  
Sbjct: 547 ARHINGTAILYAETITRSMRVAIDETNRRRQKQIDHNVQHQIIPRSVHKRIKDLIDGVYN 606

Query: 739 EDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +++  N+      A+  ++S+ +    ++ + K+M  AA NL FE+AAR RDE+K LK+
Sbjct: 607 YESSQQNLKAAQTQARYDAMSESQLAKEIQRVEKKMFSAAKNLEFEQAARYRDELKSLKN 666

Query: 796 SPYF 799
               
Sbjct: 667 KLLI 670


>gi|15598334|ref|NP_251828.1| excinuclease ABC subunit B [Pseudomonas aeruginosa PAO1]
 gi|107102687|ref|ZP_01366605.1| hypothetical protein PaerPA_01003752 [Pseudomonas aeruginosa PACS2]
 gi|218890661|ref|YP_002439525.1| excinuclease ABC subunit B [Pseudomonas aeruginosa LESB58]
 gi|12644339|sp|P72174|UVRB_PSEAE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|9949251|gb|AAG06526.1|AE004737_12 excinuclease ABC subunit B [Pseudomonas aeruginosa PAO1]
 gi|218770884|emb|CAW26649.1| excinuclease ABC subunit B [Pseudomonas aeruginosa LESB58]
          Length = 670

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/669 (55%), Positives = 483/669 (72%), Gaps = 9/669 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  FQ+ + + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +
Sbjct: 1   MDTFQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VS IYG+G   SY +M++ L  GD ++Q+ELL  L   QY
Sbjct: 121 MRLSATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+IFP+  +  A RV +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A+  IK ELK RL  L    +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+  M++GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPLRFEEW  + P TI VSATPG +E E   G ++EQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R A TQV+D+  +I     +  R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ 
Sbjct: 420 EIEVRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN++ K ILYAD +T S+Q AIDET RRR KQ+  N+ H I P+ V++ I ++++  +
Sbjct: 540 AARNLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAV 599

Query: 738 LEDAATT--------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           +  A             S   +    S  +    ++ L ++M+  A +L FE AA++RDE
Sbjct: 600 VPGARGKRKGVAKVAEESGRYENELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRDE 659

Query: 790 IKRLKSSPY 798
           I+ L+    
Sbjct: 660 IQTLRERLV 668


>gi|324009635|gb|EGB78854.1| excinuclease ABC subunit B [Escherichia coli MS 57-2]
          Length = 673

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 476/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYFPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|116051134|ref|YP_790035.1| excinuclease ABC subunit B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586355|gb|ABJ12370.1| excinuclease ABC subunit B [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 670

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/669 (55%), Positives = 483/669 (72%), Gaps = 9/669 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  FQ+ + + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +
Sbjct: 1   MDTFQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VS IYG+G   SY +M++ L  GD ++Q+ELL  L   QY
Sbjct: 121 MRLSATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+IFP+  +  A RV +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A+  IK ELK RL  L    +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+  M++GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPLRFEEW  + P TI VSATPG +E E   G I+EQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRIIEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R A TQV+D+  +I     +  R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ 
Sbjct: 420 EIEVRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN++ K ILYAD +T S+Q AIDET RRR KQ+  N+ H I P+ V++ I ++++  +
Sbjct: 540 AARNLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAV 599

Query: 738 LEDAATT--------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           +  A             S   +    S  +    ++ L ++M+  A +L FE AA++RDE
Sbjct: 600 VPGARGKRKGVAKVAEESGRYENELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRDE 659

Query: 790 IKRLKSSPY 798
           I+ L+    
Sbjct: 660 IQTLRERLV 668


>gi|332305739|ref|YP_004433590.1| excinuclease ABC, B subunit [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173068|gb|AEE22322.1| excinuclease ABC, B subunit [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 669

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/664 (55%), Positives = 474/664 (71%), Gaps = 4/664 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             FQ+ ++Y P+GDQP AI  L++G+ S    Q LLGVTGSGKTFTMA VI  +QRP ++
Sbjct: 3   RPFQLTSNYSPAGDQPKAIQALVEGLESGLAAQTLLGVTGSGKTFTMANVINEVQRPTLI 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+N  I++M
Sbjct: 63  LAHNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ER D ++VSSVS IYG+G  +SY +M++  + GD + Q+++L  L + QY 
Sbjct: 123 RLSATKALMERRDVVIVSSVSAIYGLGDPDSYMKMLLHFRQGDIMNQRDILRRLAEIQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RGTFRV GD I+IFP+  E  A RV +F  ++E IS F PLTG   + V    
Sbjct: 183 RNDIAFERGTFRVRGDVIDIFPADSEREAVRVELFDEEVERISIFDPLTGAVEKTVARAT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  +HYVTPR  +  A+++IKEELK R  +L    +L+E QR+ QR  +D+EM++  G 
Sbjct: 243 IFPKTHYVTPREKILDAVEHIKEELKERKAQLLSVNKLVEEQRISQRCQFDMEMMQELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PG+PPPTL +Y P D L+F+DESHVT+ QI  MY+GD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRTPGDPPPTLIDYFPADGLMFIDESHVTVSQIGAMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+F+E+  + P TI VSATPG +EL +    IVEQ++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFDEFEQIAPQTIYVSATPGKYELAKAPDDIVEQVVRPTGLIDPE 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR   TQV+D+  EI        R+L+T LTKRM+EDL+EYL E N++ RY+HS++ T
Sbjct: 423 IEIRPVGTQVDDLLSEIEKCVAVNERVLVTTLTKRMSEDLSEYLDEHNVKARYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ERIEIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 483 VERIEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           AR++N + ILYAD IT S+Q AIDET RRREKQ EHNKKHNI P  + + I +++D    
Sbjct: 543 ARHINGRAILYADRITGSMQRAIDETNRRREKQREHNKKHNIVPTQLNKPITDIMDVGEG 602

Query: 739 EDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  +   A+       +S      ++  L K+M   A +L FE+AA +RDE++ L+
Sbjct: 603 TGQGKVMLRKVAETGKKYNGMSAPDLMKNIAELEKKMFQMAKDLEFEQAASLRDEVETLR 662

Query: 795 SSPY 798
               
Sbjct: 663 QKLV 666


>gi|306833826|ref|ZP_07466951.1| excision endonuclease subunit UvrB [Streptococcus bovis ATCC
           700338]
 gi|304424020|gb|EFM27161.1| excision endonuclease subunit UvrB [Streptococcus bovis ATCC
           700338]
          Length = 663

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/659 (53%), Positives = 475/659 (72%), Gaps = 3/659 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F++ + Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P 
Sbjct: 6   ENNQFKLVSKYQPSGDQPEAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPT 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID
Sbjct: 66  LVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEID 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++RHSAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q
Sbjct: 126 KLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNDLVDIQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           ++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE 
Sbjct: 186 FERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGEVEH 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           + I+  +H++T    +  A+  I EE++ ++ + E EG+L+EAQR+ QR  YD+EML   
Sbjct: 246 LAIFPATHFMTNEEHMEHAIHNILEEMEEQVKQFEAEGKLIEAQRIRQRTEYDVEMLREM 305

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G    +ENYSR++ GR+ GEPP TL ++ PED L+ VDESH+T+ QI GMY GD  RK  
Sbjct: 306 GYTNGVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMVDESHMTMGQIKGMYNGDRSRKEM 365

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPLR EE+       + VSATPG +ELEQ    +VEQIIRPTGL+D
Sbjct: 366 LVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYELEQT-DTVVEQIIRPTGLLD 424

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P VE+R    Q++D+  EIN  A++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++
Sbjct: 425 PEVEVRPTMGQMDDLLGEINRRAEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDI 484

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIG
Sbjct: 485 KTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIG 544

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN    VI+YAD IT+S+Q A+DET RRRE Q+ +N++H I PQ++K+ I ++I   
Sbjct: 545 RAARNSEGHVIMYADKITESMQKAMDETARRREIQMRYNEEHGIIPQTIKKDIRDLIAIS 604

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              D   T    D    +++K + +  +K L+KQM  AA+ L+FE AA++RD +  LK+
Sbjct: 605 KSSDTDVTEDIPD--YNAMTKAERQETIKKLQKQMQEAAEMLDFELAAQLRDMVLELKA 661


>gi|323942652|gb|EGB38817.1| excinuclease ABC [Escherichia coli E482]
          Length = 673

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 477/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEICQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|238925135|ref|YP_002938652.1| excinuclease ABC subunit B [Eubacterium rectale ATCC 33656]
 gi|259710326|sp|C4ZHN1|UVRB_EUBR3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238876811|gb|ACR76518.1| excinuclease ABC subunit B [Eubacterium rectale ATCC 33656]
          Length = 660

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/657 (52%), Positives = 464/657 (70%), Gaps = 3/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL+KG     + + LLGVTGSGKTFTMA VI A+ +P ++++
Sbjct: 3   FKLHSKYKPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIAALNKPTLIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP++DTYI K+SS+N++ID++R 
Sbjct: 63  HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQSDTYIAKDSSVNDEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IVV+SVSCIYG+GS + ++ M + L+ G   ++ +L  +L+  QY R 
Sbjct: 123 SATAALTERKDVIVVASVSCIYGLGSPDEWTGMSISLRPGQERDRDDLARALIDLQYTRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD ++IFP++ +D A RV  FG++I+ I E   LTG+   ++E   I+
Sbjct: 183 DMDFHRGTFRVHGDVLDIFPANADDTAIRVEFFGDEIDRIVEVDVLTGEVKCSLEHTMIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  +  +N A   I++EL  R+   + E +L+EAQR+ +R  +D+EM+  TG C 
Sbjct: 243 PASHYVVSQEKINEACLNIEKELDERVKYFKGEDKLIEAQRIAERTNFDIEMMRETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L    PGEPP TL ++ P+D L+ VDESH+TIPQI GMY GD  RK TL +Y
Sbjct: 303 GIENYTRHLNFAKPGEPPMTLIDFFPDDFLIIVDESHITIPQIGGMYAGDRSRKTTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATP  +E E  + +  EQIIRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLNFEEFEGKIDQMLFVSATPNKYENEH-ELLRAEQIIRPTGLLDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N       ++L+T LTKRMAEDLT Y+ E  IRV+Y+HS++ TLE
Sbjct: 422 VRPVEGQIDDLVSEVNKETANHHKVLITTLTKRMAEDLTNYMAELGIRVKYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S+++AIDET RRR+ Q E+N+ H I PQ++++ + ++I   + + 
Sbjct: 542 NSEGHVIMYADKITDSMRVAIDETKRRRKVQEEYNEAHGITPQTIQKSVRDLI--AISKK 599

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            A    ++D    S+SKK+ + H+  + K+M  AA  LNFE AA  RD++  LK++ 
Sbjct: 600 VAADENALDKDPESMSKKELEKHIADIEKKMKKAAAELNFEAAAEYRDKLIMLKNTL 656


>gi|306831686|ref|ZP_07464843.1| excision endonuclease subunit UvrB [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325978625|ref|YP_004288341.1| excinuclease ABC, B subunit [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|304426111|gb|EFM29226.1| excision endonuclease subunit UvrB [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325178553|emb|CBZ48597.1| excinuclease ABC, B subunit [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 663

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/659 (53%), Positives = 474/659 (71%), Gaps = 3/659 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F++ + Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P 
Sbjct: 6   ENNQFKLVSKYQPSGDQPEAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPT 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID
Sbjct: 66  LVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEID 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++RHSAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q
Sbjct: 126 KLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNDLVDIQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           ++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE 
Sbjct: 186 FERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGEVEH 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           + I+  +H++T    +  A+  I EE++ ++ + E EG+L+EAQR+ QR  YD+EML   
Sbjct: 246 LAIFPATHFMTNEEHMEHAIHNILEEMEEQVKQFEAEGKLIEAQRIRQRTEYDVEMLREM 305

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G    +ENYSR++ GR+ GEPP TL ++ PED L+ VDESH+T+ QI GMY GD  RK  
Sbjct: 306 GYTNGVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMVDESHMTMGQIKGMYNGDRSRKEM 365

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPLR EE+       + VSATPG +ELEQ    +VEQIIRPTGL+D
Sbjct: 366 LVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYELEQT-DTVVEQIIRPTGLLD 424

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P VE+R    Q++D+  EIN  A++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++
Sbjct: 425 PEVEVRPTMGQMDDLLGEINSRAEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDI 484

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIG
Sbjct: 485 KTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIG 544

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN    VI+YAD IT+S+Q A+DET RRRE Q+ +N++H I PQ++K+ I ++I   
Sbjct: 545 RAARNSEGHVIMYADKITESMQKAMDETARRREIQMRYNEEHGIIPQTIKKDIRDLIAIS 604

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              D        D    +++K + +  +K L+KQM  AA+ L+FE AA++RD +  LK+
Sbjct: 605 KSSDTDIAEDVPD--YNAMTKAERQETIKKLQKQMQEAAEMLDFELAAQLRDMVLELKA 661


>gi|322833786|ref|YP_004213813.1| excinuclease ABC, B subunit [Rahnella sp. Y9602]
 gi|321168987|gb|ADW74686.1| excinuclease ABC, B subunit [Rahnella sp. Y9602]
          Length = 668

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/661 (55%), Positives = 467/661 (70%), Gaps = 3/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ PSGDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHSEFKPSGDQPEAIRRLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I++FP+  +D+A R+ +F  ++E +S F PLTGQ    V    IY
Sbjct: 185 DQAFQRSTFRVRGEVIDVFPAESDDLALRIELFDQEVERLSLFDPLTGQVQHEVPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKVELADRRKVLLANNKLLEEQRISQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L P +I VSATPG +ELE+    +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQSIYVSATPGKYELEKSGDDVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI        R+L+T LTKRMAEDLTEYL E   +VRY+HS++ T+E
Sbjct: 425 VRPVTTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N+N K ILY D IT S+  AI+ET RRR KQ  +N ++ I P  + +KI +++    P  
Sbjct: 545 NLNGKAILYGDKITNSMARAIEETERRRAKQEAYNLENGITPMGLNKKISDILQLGQPKT 604

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            ++    +        SL+ K  +  +K L  +M+  A NL FEEAA  RDE+  L+   
Sbjct: 605 KKNKDKRDAEAAQTFKSLTPKALEQRIKELESKMYAHAQNLEFEEAANTRDELHALREQF 664

Query: 798 Y 798
            
Sbjct: 665 I 665


>gi|166030536|ref|ZP_02233365.1| hypothetical protein DORFOR_00197 [Dorea formicigenerans ATCC
           27755]
 gi|166029698|gb|EDR48455.1| hypothetical protein DORFOR_00197 [Dorea formicigenerans ATCC
           27755]
          Length = 659

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/658 (52%), Positives = 466/658 (70%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + ++Y P+GDQP AI QL++G     + Q LLGVTGSGKTFTMA VI  + RP +
Sbjct: 1   MDHFNLVSEYSPTGDQPQAIEQLVQGFKEGNQCQTLLGVTGSGKTFTMANVIAQLNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYI K+SS+NE+ID+
Sbjct: 61  IIAHNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSVNEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT +L+ER D IVV+SVSCIYG+G  E++ QM+V L+ G   ++ E+L  L+  QY
Sbjct: 121 LRLSATAALIERRDVIVVASVSCIYGLGEPENFEQMMVSLRPGMEKDRDEVLRQLIDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD+IE+ P+   D A RV  FG++I+ ISE   LTG+    +  I
Sbjct: 181 DRNDMDFKRGTFRVRGDTIEVVPADRGDTAIRVEFFGDEIDRISEIDMLTGEIKNTLNHI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV P+  +  A+K I+ EL+ ++   + E +LLEAQR+ +R  +D+EM+  TG
Sbjct: 241 AIFPASHYVVPKERMEKAIKNIEIELEEQVKYFKGEDKLLEAQRIAERTNFDIEMMRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L G  PG+PP TL +Y P+D ++ +DESH T+PQI GMY GD  RK TL
Sbjct: 301 FCSGIENYSRHLAGLAPGQPPNTLIDYFPDDFIMMIDESHKTVPQIGGMYHGDQSRKRTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL FEE+       + VSATPG +E E  + +  +Q+IRPTGL+DP
Sbjct: 361 VDYGFRLPSALDNRPLSFEEFESKIDQVLFVSATPGQYEEEH-ELLRAQQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    Q++D+  E+        +IL+T LTKRMAEDLT+Y+ E  IRVRY+HS++ 
Sbjct: 420 EIEVRPVEGQIDDLIGEVKKEIAGKHKILITTLTKRMAEDLTDYMRELGIRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EI+RD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSL+QTIGR
Sbjct: 480 TLERTEIVRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLVQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD +T S++ AI+ET RRR+ Q+ +N++H I P ++++ + ++I   +
Sbjct: 540 AARNAEGHVIMYADNMTDSMKNAIEETKRRRKIQMAYNEEHGITPTTIQKSVRDLI--SI 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +  A T + +D    S+S+K+    +  + KQM  AA  LNFE AA +RD++  LK 
Sbjct: 598 SKKVAATELQMDKDPESMSEKELLKLIADVTKQMKKAAAELNFEAAAELRDKLIELKK 655


>gi|325498050|gb|EGC95909.1| excinuclease ABC subunit B [Escherichia fergusonii ECD227]
          Length = 673

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 477/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPVVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|269102202|ref|ZP_06154899.1| excinuclease ABC subunit B [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162100|gb|EEZ40596.1| excinuclease ABC subunit B [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 675

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/668 (53%), Positives = 479/668 (71%), Gaps = 10/668 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +++ PSGDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   +RP + +A
Sbjct: 5   FSIASEFSPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTIANVIAEAKRPTLFLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D I+++SVS IYG+G  +SY +M++ ++ GD ++Q+++L  L + QY R 
Sbjct: 125 SATKALMERRDVIIIASVSAIYGLGDPDSYLKMMLHVRRGDMLDQRDILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIKI 379
           D+   RGTFRV G+ I+IFP+  E  A R+ +F ++++ IS F PLTG  I+ ++    +
Sbjct: 185 DMAFERGTFRVRGEVIDIFPAESEKEAVRIELFDDEVDRISLFDPLTGSVIQQDLPRYTV 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL+ R  +     +L+E QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPREKILEAIEGIKVELESRRKQFMDGNKLVEEQRITQRTQFDVEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+ QI  M+RGD  RK  L E
Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPADGLLIIDESHVTVSQIGAMFRGDRSRKENLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+FEE+  L P TI VSATPG +E+E+  G I EQ++RPTGL+DP +
Sbjct: 365 YGFRLPSALDNRPLKFEEFESLAPQTIYVSATPGKYEIEKSDGEIAEQVVRPTGLLDPEI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL E  +RVRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAEDLTEYLAEHGVRVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K ILY D IT S++ AI ET RRR+KQ  +N++H I PQ + +K+ ++++     
Sbjct: 545 RNLEGKAILYGDKITGSMERAITETERRRDKQKLYNEQHGITPQKLNKKVADILELGSSS 604

Query: 740 DAATTN---------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
             A  +                 ++S ++ +  ++ L KQM+  A NL FE+AA +RD+I
Sbjct: 605 PKAKAHNRAAQLHKVAEKKGTYSAMSPQQLEGEIQQLEKQMYDFAQNLEFEKAAELRDKI 664

Query: 791 KRLKSSPY 798
             L+    
Sbjct: 665 HTLREQFI 672


>gi|311070019|ref|YP_003974942.1| excinuclease ABC subunit B [Bacillus atrophaeus 1942]
 gi|310870536|gb|ADP34011.1| excinuclease ABC subunit B [Bacillus atrophaeus 1942]
          Length = 661

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/657 (53%), Positives = 474/657 (72%), Gaps = 2/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L+KGI   +K Q LLG TG+GKTFT++ +I+ + +P +V+A
Sbjct: 5   FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y +M++ L+    +E+ +LL  LV  QY R 
Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYREMVLSLRTEMEIERNQLLRKLVDIQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ + + + + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I++EL+ +L  + ++G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTRAEKMEKAILNIEKELEEQLKVMHEKGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D ++ VDESHVTIPQ+ GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       + VSATPG +E+E    +I EQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTPEMI-EQIIRPTGLLDPIIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIQARTERNERVLITTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-ILLE 739
           N   +VI+YAD +TKS+++AI+ET RRRE+Q   N++H I PQ++ ++I +VI   +  E
Sbjct: 544 NAEGRVIMYADKMTKSMEIAINETKRRREQQERFNEEHGITPQTINKEIRDVIRATVAAE 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D          +   ++KK+ +  ++ +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 DKEEYKTKAAPKLAKMTKKERQKVVEQMELEMKEAAKALDFERAAELRDLLLELKAE 660


>gi|310815602|ref|YP_003963566.1| excinuclease ABC subunit B [Ketogulonicigenium vulgare Y25]
 gi|308754337|gb|ADO42266.1| excinuclease ABC subunit B [Ketogulonicigenium vulgare Y25]
          Length = 727

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/675 (62%), Positives = 523/675 (77%), Gaps = 2/675 (0%)

Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180
           ++   + +       +    F + T + P+GDQP+AIA+L+ GI S E  Q+LLG TG+G
Sbjct: 8   QMPMLYSTPQRREKLEGGKRFVLNTSFDPAGDQPSAIAELVAGIDSGEHDQVLLGATGTG 67

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           KTFTMA+VIE  QRPAI++A NK LAAQLY EFKNFFP NAVEYFVSYYDYYQPEAYV R
Sbjct: 68  KTFTMAQVIERTQRPAIILAHNKTLAAQLYGEFKNFFPENAVEYFVSYYDYYQPEAYVAR 127

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           TDT+IEKES INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+YS M   L +G
Sbjct: 128 TDTFIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDLFVG 187

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
            + + +++++ LV QQYKR D    RG+FRV GD +E++P+HLED AWR+S FG ++E I
Sbjct: 188 QNYDMRQVINDLVAQQYKRNDQAFSRGSFRVRGDLLEVWPAHLEDRAWRMSFFGEELESI 247

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
            EF PLTGQK  N   I+IYANSHYVTPRPT+N A+  IK EL+ RL +   EG+LLEAQ
Sbjct: 248 IEFDPLTGQKTDNFTQIRIYANSHYVTPRPTMNQAVIGIKNELRQRLDQFTDEGKLLEAQ 307

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
           RLEQR  +DLEMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHVT+
Sbjct: 308 RLEQRTRFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVTV 367

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           PQI  MYRGDF RK TLA++GFRLPSCMDNRPL+FEEW+ +RP ++ VSATPG WE+ Q 
Sbjct: 368 PQIGAMYRGDFRRKTTLADHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPGPWEMGQT 427

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
            G+  EQIIRPTGL+DP V+IR    QV+D+  EI   +  G+R L TVLTKRMAEDLTE
Sbjct: 428 GGVFAEQIIRPTGLLDPLVDIRPVEMQVDDLLSEIRKVSAAGMRTLATVLTKRMAEDLTE 487

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           YL+E+ IRVRYMHS++ T+ERIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDAD
Sbjct: 488 YLHEQGIRVRYMHSDIDTIERIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDAD 547

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
           KEGFLRS+TSL+QTIGRAARN   +VI+YAD IT S+Q A+ ET RRR++Q+ +N +H I
Sbjct: 548 KEGFLRSETSLVQTIGRAARNAEGRVIMYADRITGSMQRALAETDRRRQRQMAYNVEHGI 607

Query: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
            PQSVK+ + +++      D   + ++   +         +A L+ LR  M  AA+NL F
Sbjct: 608 TPQSVKKNVEDILFGTYQGDTDMSRVTAKIKPGK--GGNLEAVLEGLRADMRKAAENLEF 665

Query: 781 EEAARIRDEIKRLKS 795
           EEAAR+RDE+KRL++
Sbjct: 666 EEAARLRDEVKRLET 680


>gi|256822136|ref|YP_003146099.1| excinuclease ABC subunit B [Kangiella koreensis DSM 16069]
 gi|256795675|gb|ACV26331.1| excinuclease ABC, B subunit [Kangiella koreensis DSM 16069]
          Length = 662

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/658 (55%), Positives = 480/658 (72%), Gaps = 2/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + P+GDQP AI QLL+G+      Q LLGVTGSGKT+TMA VI    RPAI+MA
Sbjct: 5   FDIHSPFPPAGDQPKAIKQLLEGLEDGLSHQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYV  +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G  +++  M++ LK+GD V+Q+ +L  L + QY R 
Sbjct: 125 SATRALLERRDTIIVASVSAIYGLGDPKAFHSMVMHLKVGDEVDQRFILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + R T+RV GD I+I+P+  E  A R+ +F +++E I  F PLTG+ ++ +  + ++
Sbjct: 185 EFDLQRATYRVRGDLIDIYPAESEKHAIRIELFDDEVETIQTFDPLTGEVLKRLTRVTVF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT R T+  A++ IK +LK RL +  ++ +L+EAQRLEQR+ +D+EM++  G C 
Sbjct: 245 PKSHYVTSRQTILDAIEQIKVDLKERLAQFYEQNKLVEAQRLEQRVKFDIEMMQELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+G  PGEPPP L +Y+P D+L+ +DESHVT+ QI  MY+GD  RK TL  Y
Sbjct: 305 GIENYSRYLSGAQPGEPPPCLLDYLPPDALMLIDESHVTVSQIGAMYKGDRSRKETLVNY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL+FEE+  + P T+ VSATPG +E E   G IVEQ++RPTGL+DP VE
Sbjct: 365 GFRLPAALDNRPLKFEEFERITPQTVFVSATPGKYEEENT-GQIVEQVVRPTGLIDPEVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI+L  ++  R+L+T LTKRMAEDLT+YL E   RVRY+HS++ T+E
Sbjct: 424 IRPVGTQVDDLLSEIHLRVEKNERVLVTTLTKRMAEDLTDYLSEHGARVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ K ILYAD IT S++ AI ET RRR  Q E+N+KH I P  V +KI +V+D    + 
Sbjct: 544 NLSGKAILYADRITGSMERAIGETNRRRAIQQEYNEKHGITPIGVSKKITDVMDTGHSKK 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           +      + +Q    S       +  + KQM   A NL FE+AA++RDEI++L+ +  
Sbjct: 604 SRKVAEKL-SQYKVKSLADAVKEIAHMEKQMLEHAKNLEFEKAAKMRDEIQKLREASL 660


>gi|218549657|ref|YP_002383448.1| excinuclease ABC subunit B [Escherichia fergusonii ATCC 35469]
 gi|226695483|sp|B7LJY3|UVRB_ESCF3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|218357198|emb|CAQ89833.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia fergusonii ATCC 35469]
 gi|323976839|gb|EGB71927.1| excinuclease ABC [Escherichia coli TW10509]
 gi|324114343|gb|EGC08312.1| excinuclease ABC [Escherichia fergusonii B253]
          Length = 673

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 477/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|77917717|ref|YP_355532.1| excinuclease ABC subunit B [Pelobacter carbinolicus DSM 2380]
 gi|90111043|sp|Q3A8D0|UVRB_PELCD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|77543800|gb|ABA87362.1| Excinuclease ABC subunit B [Pelobacter carbinolicus DSM 2380]
          Length = 667

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/656 (55%), Positives = 483/656 (73%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F ++++Y P GDQP AI +L  G+   +K Q+LLGVTGSGKTFTMA V+  +QRP +
Sbjct: 1   MAKFNLKSNYQPRGDQPQAIEELSTGLQRGDKHQVLLGVTGSGKTFTMANVVAQVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAYVP TDT+IEK+SSINE+ID+
Sbjct: 61  VLAHNKTLAAQLYGEFKELFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSATRSLL RND ++VSSVSCIYG+GS E+Y  M+++L+ G  +++  LL +LV+ QY
Sbjct: 121 MRHSATRSLLSRNDVLIVSSVSCIYGLGSPEAYYGMLIRLETGMQLDRNALLKNLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD++EIFP++ E  A R+  FG++I+ I E  PL G+ +  +E  
Sbjct: 181 DRNDVDFHRGTFRVRGDTVEIFPAYEEKRALRIEFFGDEIDAICEIDPLRGKVLDRLERT 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++  SHYV  RPTL+ A++ I++EL+ RL    +   LLEAQR+EQR  +D+EM+E  G
Sbjct: 241 AVFPASHYVATRPTLDRAIREIQDELRERLTWFRENNMLLEAQRIEQRTMFDIEMIEEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+L GR  G+PP TLF+Y P+D+LLF+DESHVT+ QI  MYRGD  RK TL
Sbjct: 301 YCQGIENYSRFLDGRQAGQPPATLFDYFPDDALLFIDESHVTVSQIGAMYRGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFR+PS +DNRPL FEE+      TI VSATP  +EL +  G++VEQIIRPTGL+DP
Sbjct: 361 VRYGFRMPSALDNRPLTFEEFEAKGIQTIYVSATPADYELRKADGVVVEQIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+++R A+ QV+D+  EI L  +Q  R+L+T LTKRMAE+LT YL E  I+VRY+HS++ 
Sbjct: 421 PIDVRPAKDQVDDLIHEIRLTIKQNERVLVTTLTKRMAEELTGYLGELGIKVRYLHSDID 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++I+R+LR G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT GR
Sbjct: 481 TVERMQILRELREGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTCGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VI+YAD IT+S++  +DET RRR  QL +N++H I PQ+VK+ +  +++ I 
Sbjct: 541 AARNVAGRVIMYADRITRSMRACLDETERRRTAQLAYNEEHGITPQTVKKSLRSILEDIA 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
            +D        +      + +  K  +  ++++M  AA NL FE+AA +RD +  L
Sbjct: 601 EKDYVELPQVAEELGDYHTPQDVKNEIARVKEEMLAAAANLEFEKAAELRDRMLEL 656


>gi|119384328|ref|YP_915384.1| excinuclease ABC subunit B [Paracoccus denitrificans PD1222]
 gi|119374095|gb|ABL69688.1| Excinuclease ABC subunit B [Paracoccus denitrificans PD1222]
          Length = 741

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/677 (62%), Positives = 525/677 (77%), Gaps = 1/677 (0%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTG 178
           N                +    F M++++ P+GDQP AIA+L +G+ + E+ Q+LLG TG
Sbjct: 18  NTNAPVARFPEVSRPKLEGGKRFVMRSEFQPAGDQPTAIAELSQGVRAGERDQVLLGATG 77

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           +GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV
Sbjct: 78  TGKTFTMAKVIEQTQRPAIILAPNKTLAAQLYGEFKGFFPENAVEYFVSYYDYYQPEAYV 137

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLK 298
            R+DTYIEKES INE IDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+YS M   + 
Sbjct: 138 ARSDTYIEKESQINEAIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDMV 197

Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358
           +G   +Q+E L+ LV QQY+R D     G FRV GD +E++P+HLED AWR   FGN++E
Sbjct: 198 VGQLYDQREFLAELVAQQYRRLDAAFQCGGFRVRGDLVEVWPAHLEDRAWRFDFFGNELE 257

Query: 359 EISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE 418
            I+EF PLTG K  + + I+IYANSHYVTPRPTL  A+K I+ EL+ RL +L  EG+LLE
Sbjct: 258 SITEFDPLTGAKTDSFKQIRIYANSHYVTPRPTLQQAIKGIRTELQTRLKQLADEGKLLE 317

Query: 419 AQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHV 478
           AQRLEQR  +DLEMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV
Sbjct: 318 AQRLEQRTNFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHV 377

Query: 479 TIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
           ++PQI GMYRGDF RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WEL+
Sbjct: 378 SVPQIGGMYRGDFRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAQWELD 437

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           Q  G+  EQ+IRPTGL+DP VEIR    QV+D+ DE+   A  G+R L+T LTKRMAEDL
Sbjct: 438 QTGGVFTEQVIRPTGLLDPQVEIRPVEMQVDDLLDEVRKVAAAGMRTLVTTLTKRMAEDL 497

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           TEYL+E+ IRVRYMHS++ T+ERIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILD
Sbjct: 498 TEYLHEQGIRVRYMHSDIDTIERIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILD 557

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH 718
           ADKEGFLRS+TSLIQTIGRAARN + +VI+YAD IT S++ A+ ET RRR+KQ+ +N+ H
Sbjct: 558 ADKEGFLRSETSLIQTIGRAARNADGRVIMYADRITGSMERAMAETERRRQKQVAYNEAH 617

Query: 719 NINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
            I PQ+V++ + +V+  +   D     I+   ++  +      AHL +LR QM  AA+NL
Sbjct: 618 GITPQTVRKNVEDVLAGLWQGDTDQARITTRVEK-PMVGANLAAHLDALRAQMRKAAENL 676

Query: 779 NFEEAARIRDEIKRLKS 795
            FEEAAR+RDE+KRL++
Sbjct: 677 EFEEAARLRDEVKRLEA 693


>gi|1592818|emb|CAA63759.1| uvrB [Pseudomonas aeruginosa PAO1]
          Length = 670

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/669 (55%), Positives = 483/669 (72%), Gaps = 9/669 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  FQ+ + + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +
Sbjct: 1   MDTFQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VS IYG+G   SY +M++ L  GD ++Q+ELL  L   QY
Sbjct: 121 MRLSATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLQRLTSLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+IFP+  +  A RV +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A+  IK ELK RL  L    +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+  M++GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPLRFEEW  + P TI VSATPG +E E   G I+EQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRIIEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R A TQV+D+  +I     +  R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ 
Sbjct: 420 EIEVRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN++ K ILYAD +T S+Q AIDET RRR KQ+  N+ H I P+ V++ I ++++  +
Sbjct: 540 AARNLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAV 599

Query: 738 LEDAATT--------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           +  A             S   +    S  +    ++ L ++M+  A +L FE AA++RDE
Sbjct: 600 VPGARGKRKGVAKVAEESGRYENELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRDE 659

Query: 790 IKRLKSSPY 798
           I+ L+    
Sbjct: 660 IQTLRERLV 668


>gi|323525489|ref|YP_004227642.1| excinuclease ABC subunit B [Burkholderia sp. CCGE1001]
 gi|323382491|gb|ADX54582.1| excinuclease ABC, B subunit [Burkholderia sp. CCGE1001]
          Length = 697

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/671 (54%), Positives = 483/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 22  EGSPFQLYQPYPPAGDQPTAIETLVEGVEDGLSFQTLLGVTGSGKTFTMANTIARLGRPA 81

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 82  IVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 141

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 142 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQRDIIARLIAMQ 201

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RG+FRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 202 YNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKIPR 261

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK EL+ RL     EG+L+EAQRLEQR  +DLEML+  
Sbjct: 262 FTVYPSSHYVTPRDTVVRAVETIKAELRERLEFFYSEGKLVEAQRLEQRTRFDLEMLQEL 321

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+++ +DESHV I Q++GMY GD  RK  
Sbjct: 322 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDAIMLLDESHVLIGQLNGMYNGDRARKEN 381

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G + EQ++RPTGLVD
Sbjct: 382 LVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-KKTSGQVAEQLVRPTGLVD 440

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R ARTQV+DV  EIN     G R+L+TVLTKRMAE LTE+L +  I+VRY+HS++
Sbjct: 441 PEIEVRPARTQVDDVLAEINERVAAGDRVLVTVLTKRMAEQLTEFLADHGIKVRYLHSDI 500

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 501 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 560

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYAD +T S++ AIDET RRR KQ+  N +H I P+ V ++I ++ID +
Sbjct: 561 RAARNVNGKAILYADKVTDSMRRAIDETERRRAKQIAFNLEHGITPRGVVKRIRDIIDGV 620

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    LK L KQM   A NL FE+AA+ RD++  L
Sbjct: 621 YNVDDARAELKEQQTRAKFEDMSEKQLAKELKRLEKQMMEHAKNLEFEKAAQTRDQLALL 680

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 681 RQRVFGANVGD 691


>gi|332971677|gb|EGK10625.1| excision endonuclease subunit UvrB [Desmospora sp. 8437]
          Length = 675

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/656 (53%), Positives = 469/656 (71%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P GDQP AI  L  G+ + +K Q LLG TG+GKTFT+A  I    +P +V+A
Sbjct: 20  FRLVSEFQPRGDQPKAIEMLTDGLLTGKKHQTLLGATGTGKTFTIAHTIARAGKPTLVIA 79

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL  E K FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK++SIN++ID++RH
Sbjct: 80  PNKTLAAQLCGELKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIEKDASINDEIDKLRH 139

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IVV+SVSCIYG+GS E Y   +V L++G   ++  +L  LV  QY+R 
Sbjct: 140 SATSALFERQDVIVVASVSCIYGLGSPEEYRSQVVSLRVGMEKDRNAVLRDLVDIQYERN 199

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  +RGTFRV GD +EIFP+   + A RV  FG++I+ I E   LTG+ + + E I I+
Sbjct: 200 DMNFVRGTFRVRGDVLEIFPASRSEQAIRVEFFGDEIDRIREIDVLTGEILGDREHIAIF 259

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +  +  A+K I+ EL  RL  L+ + +LLEAQRLEQR  YD+EM+   G C 
Sbjct: 260 PASHYVTRQEVMRRALKEIEAELDERLAVLKSQDKLLEAQRLEQRTRYDMEMMREVGFCS 319

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L G+  GEPP TL +Y P+D L  +DESHVT+PQ+  MY+GD  RK  L ++
Sbjct: 320 GIENYSRHLVGKKAGEPPYTLLDYFPDDFLTIIDESHVTVPQVGAMYKGDRARKEMLVDH 379

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+FEE+       I VSATPG +EL +    + EQIIRPTGL+DP + 
Sbjct: 380 GFRLPSAMDNRPLQFEEFEKRLHQVIYVSATPGPYELGKTPE-LTEQIIRPTGLLDPKIH 438

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  E+N   ++  R+L+T LTK+MAEDLT+YL E  I+V+Y+HS++KT+E
Sbjct: 439 VRPIQGQIDDLIGEVNKRVERNERVLVTTLTKKMAEDLTDYLKEAGIKVQYLHSDIKTIE 498

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 499 RMQILRSLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 558

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +T+S+Q AI+ET RRR  Q+ HN+KH I PQ++++ + EVI+   + +
Sbjct: 559 NANGEVIMYADRVTESMQKAIEETERRRSVQIAHNEKHGITPQTIQKAVREVIEATKVAE 618

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                  +      +S K+ +  ++ L K+M  AA +L FE AA +RD I  LK+ 
Sbjct: 619 ENEAY-QVAPDMEKMSGKERRQLIEGLEKEMKQAARDLQFERAAELRDMILELKAE 673


>gi|52082051|ref|YP_080842.1| excinuclease ABC subunit B [Bacillus licheniformis ATCC 14580]
 gi|52787440|ref|YP_093269.1| excinuclease ABC subunit B [Bacillus licheniformis ATCC 14580]
 gi|319647917|ref|ZP_08002135.1| UvrABC system protein B [Bacillus sp. BT1B_CT2]
 gi|81825174|sp|Q65ED8|UVRB_BACLD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|52005262|gb|AAU25204.1| excinuclease ABC (subunit B) [Bacillus licheniformis ATCC 14580]
 gi|52349942|gb|AAU42576.1| UvrB [Bacillus licheniformis ATCC 14580]
 gi|113927091|emb|CAK18196.1| excinuclease ABC, subunit B [Bacillus licheniformis]
 gi|113927100|emb|CAK18204.1| excinuclease ABC, subunit B [Bacillus licheniformis]
 gi|317390258|gb|EFV71067.1| UvrABC system protein B [Bacillus sp. BT1B_CT2]
          Length = 661

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/657 (56%), Positives = 473/657 (71%), Gaps = 2/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI QL+KGI+   K Q LLG TG+GKTFTM+ VI+ + +P +V+A
Sbjct: 5   FELVSNYQPQGDQPKAIDQLVKGINEGRKHQTLLGATGTGKTFTMSNVIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS E Y +M++ L+    +E+ ELL  LV  QY R 
Sbjct: 125 SATSALFERKDVIIVASVSCIYGLGSPEEYREMVLSLRTEMEIERNELLRKLVDIQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ +   E + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I+EEL+ RL  L +EG+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKKAIINIEEELEERLKALREEGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHVTIPQI GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDYFPDDFLMVIDESHVTIPQIRGMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       + VSATPG +ELE     +VEQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFEEFEKHIHNIVYVSATPGPYELEHTPE-MVEQIIRPTGLLDPIIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIQQRIERNERVLVTTLTKKMSEDLTDYLKEIGIKVTYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKHDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N   +VI+YAD IT S+++AI+ET RRRE+Q  +N+KH I P+++ +KI +VI      E
Sbjct: 544 NAEGRVIMYADKITNSMEIAINETKRRREQQEAYNEKHGITPKTINKKIRDVIRATHAAE 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D     +  + +   ++KK+ +  +  +   M  AA  L+FE AA +RD +  LKS 
Sbjct: 604 DQEEYQVKEEPKLSKMTKKEREKVIAQMESDMKEAAKALDFERAAELRDLLLELKSE 660


>gi|56964823|ref|YP_176554.1| excinuclease ABC subunit B [Bacillus clausii KSM-K16]
 gi|81822037|sp|Q5WDG7|UVRB_BACSK RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56911066|dbj|BAD65593.1| excinuclease ABC subunit B UvrB [Bacillus clausii KSM-K16]
          Length = 660

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/656 (54%), Positives = 468/656 (71%), Gaps = 1/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P GDQP AI Q++ GI + +K Q LLG TG+GKTFTM+ VI+A+ +P +VMA
Sbjct: 5   FQLVSDYSPQGDQPKAIEQIVTGIQNGKKHQTLLGATGTGKTFTMSNVIQAVNKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK  FP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKQLFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y  +++ ++ G  +++  LL  LV  QY R 
Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYRDLVLSIRTGMEMDRNSLLRKLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +RGTFRV GD +EIFP+  ++   RV  FG++IE I+E   LTG+       + I+
Sbjct: 185 DINFVRGTFRVRGDVVEIFPASRDEQCMRVEFFGDEIERITEVDALTGEIKGERHHVSIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I+ EL+ RL  L KE +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKKAIANIEVELEERLSVLRKEEKLLEAQRLEQRTRYDLEMMAEMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL ++ P+D LL VDESHVT+PQ+ GMY GD  RK  L  +
Sbjct: 305 GIENYSRHLTLREAGATPYTLLDFFPKDFLLIVDESHVTLPQVRGMYNGDRARKEILVNH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLKFEEFEEKVGQAVYVSATPGPYELEHTPE-MVEQIIRPTGLLDPVVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  +I+    +  R+L+T LTK+MAEDLT+YL E  I+VRY+HSEVKTLE
Sbjct: 424 VRPIEGQIDDLIGQIHDQIAKDERVLVTTLTKKMAEDLTDYLKEIGIKVRYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIR LRLG FDVL+GINLLREG+DIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 484 RLEIIRQLRLGTFDVLIGINLLREGIDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +T S+++AI+ET RRR+ Q  +N++H I PQ+++++I EV+      +
Sbjct: 544 NANGRVIMYADKMTHSMEVAINETKRRRQIQQAYNEQHGITPQTIQKRIPEVVQATYAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 +       L KK+ +A ++ +  +M  AA  LNFE AA +RD +  LK+ 
Sbjct: 604 ETGDYKASSTSSKKLGKKERQATIERVEAEMKQAAKELNFERAAELRDVLLELKAE 659


>gi|260893664|ref|YP_003239761.1| excinuclease ABC, B subunit [Ammonifex degensii KC4]
 gi|260865805|gb|ACX52911.1| excinuclease ABC, B subunit [Ammonifex degensii KC4]
          Length = 681

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/666 (53%), Positives = 472/666 (70%), Gaps = 4/666 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F+++ D+ P+GDQP AIA+L++G+    ++Q LLGVTGSGKTFTMA VI  + RP +
Sbjct: 1   MGLFKLRADFAPAGDQPQAIAKLVEGVRKGYRMQTLLGVTGSGKTFTMANVIAQLNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQL SEFK FFP NAVEYF+SYYDYYQPEAY+P+ D YIEK++ INE+ID+
Sbjct: 61  VIAPNKTLAAQLCSEFKEFFPENAVEYFISYYDYYQPEAYLPQADLYIEKDALINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+AT ++LER D IVV+SVSCIY +G+   Y   +V L+ G+  ++  +L  LV+ +Y
Sbjct: 121 LRHAATAAVLERRDVIVVASVSCIYSLGNPVDYRDQVVSLRRGECYDRDSILRKLVRIRY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R +    RG FRV GD +++FP+   + A RV  FG+++E I EF PLTG  +     +
Sbjct: 181 ERTEGDFTRGKFRVRGDVLDVFPASTSERAIRVEFFGDEVERILEFDPLTGDILGERYHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             +  +HYVT    L   +  I+EEL  R+   + +GRLLEAQRLE R  YDLEML   G
Sbjct: 241 SFFPATHYVTAPERLENIIAAIEEELAERVAWFKAQGRLLEAQRLETRTRYDLEMLREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSRYLTGR PGEPP TL +Y P D L+F+DESHVT+PQ+ GMY GD  RK +L
Sbjct: 301 YCKGIENYSRYLTGRAPGEPPYTLLDYFPPDFLVFIDESHVTVPQLHGMYEGDRSRKESL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL+FEE+       I VSATPG +ELE  +  IVEQI+RPTGLVDP
Sbjct: 361 VEYGFRLPSAFDNRPLKFEEFIERVNQVIFVSATPGPYELEHSEQ-IVEQIVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+ +R  + Q++D+  EI     +G R+L+T LTKRMAEDL +YL E  ++VRY+H+++ 
Sbjct: 420 PMVVRPTKGQIDDLLGEIRTRVARGERVLVTTLTKRMAEDLADYLREMGVKVRYLHADID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            LER+ IIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS+ SLIQ  GR
Sbjct: 480 ALERMAIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQIAGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN  VILYAD IT+S++ AI+ET RRR  Q+E+N+KH I P++V++ + EVI+   
Sbjct: 540 AARNVNGLVILYADRITESMRRAIEETERRRRLQIEYNQKHGIVPRTVEKPVREVIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + +        + +   L   K K+   +  +QM  AA +L+FE AA++RD    L++  
Sbjct: 600 VAEEKGVY---EVRPKELPTSKLKSLAAAYERQMREAAKSLDFELAAQLRDIWLELRAEL 656

Query: 798 YFQGLD 803
             +G++
Sbjct: 657 VARGVE 662


>gi|238788761|ref|ZP_04632552.1| UvrABC system protein B [Yersinia frederiksenii ATCC 33641]
 gi|238723066|gb|EEQ14715.1| UvrABC system protein B [Yersinia frederiksenii ATCC 33641]
          Length = 706

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/665 (55%), Positives = 468/665 (70%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +++ P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +V
Sbjct: 39  KPFKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMV 98

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SS+NE I++M
Sbjct: 99  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSVNEHIEQM 158

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 159 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYS 218

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ    V    
Sbjct: 219 RNDQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFT 278

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 279 VYPKTHYVTPRERILQAMEEIKVELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGY 338

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL 
Sbjct: 339 CSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLV 398

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+  G +V+Q++RPTGL+DP 
Sbjct: 399 EYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGEVVDQVVRPTGLLDPL 458

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI + A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 459 IEVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLEEHGARVRYLHSDIDT 518

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 519 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 578

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +KI +++     
Sbjct: 579 ARNLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLGQP 638

Query: 735 -PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                       ++      SL  K     ++ L  +M+  A NL FE+AA +RD++ +L
Sbjct: 639 SMRGKGKGRGGKVADTNNYQSLPPKALDQKIRELEAKMYTHAQNLEFEQAAELRDQVHQL 698

Query: 794 KSSPY 798
           +    
Sbjct: 699 RQQFI 703


>gi|312278810|gb|ADQ63467.1| excinuclease ABC subunit B [Streptococcus thermophilus ND03]
          Length = 663

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/660 (54%), Positives = 483/660 (73%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K+   F + + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI+ + +P
Sbjct: 5   KEDNQFHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT +LLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  
Sbjct: 125 DKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE
Sbjct: 185 QFERNDIDFQRGKFRVRGDVVEIFPASRDENAFRVEFFGDEIDRICEIESLTGRNLGEVE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H++T    +  A+K I EE+++++ + E EG+L+EAQR+ QR  YD+EML  
Sbjct: 245 HLVLFPATHFMTNEEHMEEAIKNIMEEMEVQVNQFEAEGKLIEAQRIRQRTEYDVEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    IENYSR++ GR  GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGIENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKK 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +VEQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R    Q++D+  EIN   ++G R+ +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN +  VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I  
Sbjct: 544 GRAARNSDGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               +A     +++    +++KK+ +  +K L+KQMH AA+ L+FE AA+IRD +  LKS
Sbjct: 604 TKTNEAEVAEDTVN--YCAMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLELKS 661


>gi|261868251|ref|YP_003256173.1| excinuclease ABC subunit B [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413583|gb|ACX82954.1| excinuclease ABC subunit B [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 680

 Score =  847 bits (2189), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/672 (55%), Positives = 482/672 (71%), Gaps = 9/672 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + + + PSGDQP AIA+L + +      Q LLGVTGSGKTFT+A VI  + RPA
Sbjct: 6   NTKPFILHSHFKPSGDQPQAIAKLAENLEDGLAHQTLLGVTGSGKTFTIANVIAQLNRPA 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+APNK LAAQLY+E K+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI+
Sbjct: 66  MVLAPNKTLAAQLYAEMKDFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIE 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+S LER D IVV+SVS IYG+G  +SY +M++ L+ G  + Q+++L+ L + Q
Sbjct: 126 QMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQQGAIINQRQILAKLAELQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV G+ I+IFP+  +D A R+ +F  +IE +S F PLTG     V  
Sbjct: 186 YTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDGEIERLSLFDPLTGSSFGTVPR 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y  +HYVTPR  +  A++ IK EL  R     KE +LLE QR+ QR  +D+EM+   
Sbjct: 246 FTVYPKTHYVTPRERILDAIEKIKLELAQRREYFTKENKLLEEQRISQRTQFDIEMMNEL 305

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRYL+ RN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK T
Sbjct: 306 GYCSGIENYSRYLSDRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKET 365

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+  G I++Q++RPTGL+D
Sbjct: 366 LVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGGEIIDQVVRPTGLLD 425

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EIR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++
Sbjct: 426 PQIEIRPVSIQVDDLLSEARHRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDI 485

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 486 DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 545

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN++ K ILYAD ITKS++ AI ET RRREKQ ++N+   I PQ++ +K+ E++D  
Sbjct: 546 RAARNLHGKAILYADNITKSMEKAITETNRRREKQAKYNEAQGIVPQALNKKVGELLDIG 605

Query: 737 LLEDAATTNISIDAQQLS---------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
              +          + ++          S K+ +  +K L +QM+  A +L FE+AA  R
Sbjct: 606 QGANQKAKANKQRGKTVAEPTALYTTPKSPKEYQQQIKKLEQQMYKFAQDLEFEKAAATR 665

Query: 788 DEIKRLKSSPYF 799
           D++++L+ S   
Sbjct: 666 DQLQQLRESFML 677


>gi|325518377|gb|EGC98099.1| excinuclease ABC subunit B [Burkholderia sp. TJI49]
          Length = 696

 Score =  847 bits (2189), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/671 (54%), Positives = 483/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 21  EGSPFQLYQPYPPAGDQPTAIDTLVEGVEDGLAFQTLLGVTGSGKTFTMANTIARLGRPA 80

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 81  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 140

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+++ L+  Q
Sbjct: 141 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQREVIARLIAMQ 200

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG+  + +  
Sbjct: 201 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLQLFDPLTGRVRQKIPR 260

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IKEEL+ RL    ++G+L+EAQRLEQR  +DLEML+  
Sbjct: 261 FTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHRDGKLVEAQRLEQRTRFDLEMLQEL 320

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 321 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 380

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G + EQ++RPTGLVD
Sbjct: 381 LVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSATPADYE-QRVTGQVAEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A +QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 440 PEIEVRPASSQVDDVLAEINARVKAGERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYAD +T S++ AI ET RRR KQ+ +N++  I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGKAILYADNMTDSMKRAIGETERRRAKQIAYNEQMGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA  RD++  L
Sbjct: 620 YNADEARAELKEAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAAATRDQLALL 679

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 680 RERVFGANVGD 690


>gi|55821473|ref|YP_139915.1| excinuclease ABC subunit B [Streptococcus thermophilus LMG 18311]
 gi|55823402|ref|YP_141843.1| excinuclease ABC subunit B [Streptococcus thermophilus CNRZ1066]
 gi|81820260|sp|Q5LYS1|UVRB_STRT1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|81820426|sp|Q5M3D5|UVRB_STRT2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|55737458|gb|AAV61100.1| excinuclease ABC subunit B [Streptococcus thermophilus LMG 18311]
 gi|55739387|gb|AAV63028.1| excinuclease ABC subunit B [Streptococcus thermophilus CNRZ1066]
          Length = 668

 Score =  847 bits (2189), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/660 (54%), Positives = 483/660 (73%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K+   F + + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI+ + +P
Sbjct: 10  KEDNQFHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKP 69

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++I
Sbjct: 70  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEI 129

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT +LLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  
Sbjct: 130 DKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDI 189

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE
Sbjct: 190 QFERNDIDFQRGKFRVRGDVVEIFPASRDENAFRVEFFGDEIDRICEIESLTGRNLGEVE 249

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H++T    +  A+K I EE+++++ + E EG+L+EAQR+ QR  YD+EML  
Sbjct: 250 HLVLFPATHFMTNEEHMEEAIKNIMEEMEVQVNQFEAEGKLIEAQRIRQRTEYDVEMLRE 309

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    IENYSR++ GR  GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 310 MGYTNGIENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKK 369

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +VEQIIRPTGL+
Sbjct: 370 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLL 428

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R    Q++D+  EIN   ++G R+ +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 429 DPEVEVRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSD 488

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 489 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 548

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN +  VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I  
Sbjct: 549 GRAARNSDGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISI 608

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               +A     +++    +++KK+ +  +K L+KQMH AA+ L+FE AA+IRD +  LKS
Sbjct: 609 TKTNEAEVAEDTVN--YSAMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLELKS 666


>gi|186476713|ref|YP_001858183.1| excinuclease ABC subunit B [Burkholderia phymatum STM815]
 gi|184193172|gb|ACC71137.1| excinuclease ABC, B subunit [Burkholderia phymatum STM815]
          Length = 697

 Score =  847 bits (2189), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/671 (54%), Positives = 487/671 (72%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D + F++   Y P+GDQPAAI  L++G+      Q LLGVTGSGKT+TMA  I  + RPA
Sbjct: 22  DGSPFRLYQPYPPAGDQPAAIQTLVEGVEDGLSFQTLLGVTGSGKTYTMANTIARLGRPA 81

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 82  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 141

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 142 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKMGQRDIIARLIAMQ 201

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RG+FRV GD+I+IFP+   ++A RV +F ++I+ +  F PLTG+  + +  
Sbjct: 202 YNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEIDTLQLFDPLTGRVRQKIPR 261

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK EL+ RL     +G+L+EAQRLEQR  +DLEML+  
Sbjct: 262 FTVYPSSHYVTPRETVMRAVETIKSELRDRLEFFYNDGKLVEAQRLEQRTRFDLEMLQEL 321

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+++F+DESHV I Q++GMY GD  RK  
Sbjct: 322 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPTDAIMFLDESHVLIGQLNGMYNGDRARKEN 381

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G + EQ++RPTGLVD
Sbjct: 382 LVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-KKTAGQVAEQVVRPTGLVD 440

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +++R ARTQV+DV  EIN     G R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 441 PEIDVRPARTQVDDVLAEINERVAAGDRVLVTVLTKRMAEQLTEFLADHGVKVRYLHSDI 500

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 501 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 560

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYAD IT S++ AIDET RRR KQ+  N++  I P+ V ++I ++ID +
Sbjct: 561 RAARNVNGKAILYADKITDSMKRAIDETERRRAKQIAFNEQMGIVPRGVVKRIKDIIDGV 620

Query: 737 LLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +    + A+   +S+K+    +K L KQM   A NL FE+AA++RD++  L
Sbjct: 621 YNVDEARAELKEQQVRAKFEDMSEKQIAKEIKRLEKQMMEHAKNLEFEKAAQMRDQLALL 680

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 681 RERVFGANVGD 691


>gi|152977385|ref|YP_001376902.1| excinuclease ABC subunit B [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152026137|gb|ABS23907.1| excinuclease ABC, B subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 658

 Score =  847 bits (2189), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/656 (54%), Positives = 482/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI QL+KGI + ++ Q+LLG TG+GKTFT++ VI+ +++P +VMA
Sbjct: 5   FEIVSEYSPQGDQPKAIEQLVKGIQNGKRHQVLLGATGTGKTFTISNVIKEVKKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   E + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVDALTGEVLAEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL ++G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNEQGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHVT+PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDYFPKDFLIVMDESHVTVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       I VSATPG +ELE     +VEQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEEKANQIIYVSATPGPYELEHAPE-VVEQIIRPTGLLDPKIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLLGEIQERIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YAD ITKS+Q+AIDET RRREKQ  +NK+H I P+++++++ +VI   +  +
Sbjct: 544 NENGHVIMYADHITKSMQIAIDETKRRREKQEAYNKEHGITPKTIQKEVRDVIRATVAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 +   ++  ++KK+ +  +  +  +M  AA  L+FE AA +RD I  LK+ 
Sbjct: 604 ETEVYEATAMKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLILELKAE 657


>gi|254241832|ref|ZP_04935154.1| excinuclease ABC subunit B [Pseudomonas aeruginosa 2192]
 gi|126195210|gb|EAZ59273.1| excinuclease ABC subunit B [Pseudomonas aeruginosa 2192]
          Length = 670

 Score =  847 bits (2189), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/669 (55%), Positives = 483/669 (72%), Gaps = 9/669 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  FQ+ + + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +
Sbjct: 1   MDTFQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VS IYG+G   SY +M++ L  GD ++Q+ELL  L   QY
Sbjct: 121 MRLSATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+IFP+  +  A RV +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A+  IK ELK RL  L    +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR PGEPPPTL++Y+P +SLL +DESHV++PQ+  M++GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPLRFEEW  + P TI VSATPG +E E   G ++EQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R A TQV+D+  +I     +  R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ 
Sbjct: 420 EIEVRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLR G FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVSILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN++ K ILYAD +T S+Q AIDET RRR KQ+  N+ H I P+ V++ I ++++  +
Sbjct: 540 AARNLHGKAILYADNVTGSMQRAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAV 599

Query: 738 LEDAATT--------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           +  A             S   +    S  +    ++ L ++M+  A +L FE AA++RDE
Sbjct: 600 VPGARGKRKGVAKVAEESGRYENELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQLRDE 659

Query: 790 IKRLKSSPY 798
           I+ L+    
Sbjct: 660 IQTLRERLV 668


>gi|15800530|ref|NP_286542.1| excinuclease ABC subunit B [Escherichia coli O157:H7 EDL933]
 gi|15830111|ref|NP_308884.1| excinuclease ABC subunit B [Escherichia coli O157:H7 str. Sakai]
 gi|16128747|ref|NP_415300.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli str. K-12 substr. MG1655]
 gi|74311323|ref|YP_309742.1| excinuclease ABC subunit B [Shigella sonnei Ss046]
 gi|82543226|ref|YP_407173.1| excinuclease ABC subunit B [Shigella boydii Sb227]
 gi|89107630|ref|AP_001410.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli str. K-12 substr. W3110]
 gi|91209808|ref|YP_539794.1| excinuclease ABC subunit B [Escherichia coli UTI89]
 gi|117622962|ref|YP_851875.1| excinuclease ABC subunit B [Escherichia coli APEC O1]
 gi|157155274|ref|YP_001461967.1| excinuclease ABC subunit B [Escherichia coli E24377A]
 gi|157160254|ref|YP_001457572.1| excinuclease ABC subunit B [Escherichia coli HS]
 gi|168757121|ref|ZP_02782128.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4401]
 gi|168764319|ref|ZP_02789326.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4501]
 gi|168767278|ref|ZP_02792285.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4486]
 gi|168779321|ref|ZP_02804328.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4076]
 gi|168786991|ref|ZP_02811998.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC869]
 gi|168799949|ref|ZP_02824956.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC508]
 gi|170020865|ref|YP_001725819.1| excinuclease ABC subunit B [Escherichia coli ATCC 8739]
 gi|170080438|ref|YP_001729758.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli str. K-12 substr. DH10B]
 gi|170682296|ref|YP_001742882.1| excinuclease ABC subunit B [Escherichia coli SMS-3-5]
 gi|187734131|ref|YP_001881035.1| excinuclease ABC subunit B [Shigella boydii CDC 3083-94]
 gi|188493976|ref|ZP_03001246.1| excinuclease ABC, B subunit [Escherichia coli 53638]
 gi|191169290|ref|ZP_03031040.1| excinuclease ABC, B subunit [Escherichia coli B7A]
 gi|193064410|ref|ZP_03045491.1| excinuclease ABC, B subunit [Escherichia coli E22]
 gi|193069360|ref|ZP_03050315.1| excinuclease ABC, B subunit [Escherichia coli E110019]
 gi|194428179|ref|ZP_03060722.1| excinuclease ABC, B subunit [Escherichia coli B171]
 gi|194438379|ref|ZP_03070469.1| excinuclease ABC, B subunit [Escherichia coli 101-1]
 gi|195936818|ref|ZP_03082200.1| excinuclease ABC subunit B [Escherichia coli O157:H7 str. EC4024]
 gi|208815343|ref|ZP_03256522.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208822169|ref|ZP_03262488.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209398352|ref|YP_002269448.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4115]
 gi|209918024|ref|YP_002292108.1| excinuclease ABC subunit B [Escherichia coli SE11]
 gi|215485867|ref|YP_002328298.1| excinuclease ABC subunit B [Escherichia coli O127:H6 str. E2348/69]
 gi|217324415|ref|ZP_03440499.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. TW14588]
 gi|218553362|ref|YP_002386275.1| excinuclease ABC subunit B [Escherichia coli IAI1]
 gi|218557684|ref|YP_002390597.1| excinuclease ABC subunit B [Escherichia coli S88]
 gi|218694252|ref|YP_002401919.1| excinuclease ABC subunit B [Escherichia coli 55989]
 gi|218704156|ref|YP_002411675.1| excinuclease ABC subunit B [Escherichia coli UMN026]
 gi|238900038|ref|YP_002925834.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli BW2952]
 gi|253774218|ref|YP_003037049.1| excinuclease ABC subunit B [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254160856|ref|YP_003043964.1| excinuclease ABC subunit B [Escherichia coli B str. REL606]
 gi|254791973|ref|YP_003076810.1| excinuclease ABC subunit B [Escherichia coli O157:H7 str. TW14359]
 gi|256021152|ref|ZP_05435017.1| excinuclease ABC subunit B [Shigella sp. D9]
 gi|256023626|ref|ZP_05437491.1| excinuclease ABC subunit B [Escherichia sp. 4_1_40B]
 gi|260843021|ref|YP_003220799.1| excinuclease UvrABC subunit UvrB [Escherichia coli O103:H2 str.
           12009]
 gi|260854070|ref|YP_003227961.1| excinuclease UvrABC subunit UvrB [Escherichia coli O26:H11 str.
           11368]
 gi|260866946|ref|YP_003233348.1| excinuclease UvrABC subunit UvrB [Escherichia coli O111:H- str.
           11128]
 gi|261225426|ref|ZP_05939707.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258605|ref|ZP_05951138.1| excinuclease UvrABC subunit UvrB [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281776|ref|YP_003498594.1| UvrABC system protein B [Escherichia coli O55:H7 str. CB9615]
 gi|293404080|ref|ZP_06648074.1| excinuclease ABC subunit B [Escherichia coli FVEC1412]
 gi|293409157|ref|ZP_06652733.1| excinuclease ABC [Escherichia coli B354]
 gi|293414059|ref|ZP_06656708.1| excinuclease ABC [Escherichia coli B185]
 gi|293433040|ref|ZP_06661468.1| excinuclease ABC [Escherichia coli B088]
 gi|298379861|ref|ZP_06989466.1| UvrABC system protein B [Escherichia coli FVEC1302]
 gi|300816423|ref|ZP_07096645.1| excinuclease ABC subunit B [Escherichia coli MS 107-1]
 gi|300822938|ref|ZP_07103073.1| excinuclease ABC subunit B [Escherichia coli MS 119-7]
 gi|300898267|ref|ZP_07116618.1| excinuclease ABC subunit B [Escherichia coli MS 198-1]
 gi|300907106|ref|ZP_07124772.1| excinuclease ABC subunit B [Escherichia coli MS 84-1]
 gi|300920026|ref|ZP_07136485.1| excinuclease ABC subunit B [Escherichia coli MS 115-1]
 gi|300922802|ref|ZP_07138889.1| excinuclease ABC subunit B [Escherichia coli MS 182-1]
 gi|300929419|ref|ZP_07144888.1| excinuclease ABC subunit B [Escherichia coli MS 187-1]
 gi|300947141|ref|ZP_07161355.1| excinuclease ABC subunit B [Escherichia coli MS 116-1]
 gi|300957724|ref|ZP_07169912.1| excinuclease ABC subunit B [Escherichia coli MS 175-1]
 gi|301020730|ref|ZP_07184798.1| excinuclease ABC subunit B [Escherichia coli MS 69-1]
 gi|301024502|ref|ZP_07188178.1| excinuclease ABC subunit B [Escherichia coli MS 196-1]
 gi|301327971|ref|ZP_07221136.1| excinuclease ABC subunit B [Escherichia coli MS 78-1]
 gi|301646208|ref|ZP_07246104.1| excinuclease ABC subunit B [Escherichia coli MS 146-1]
 gi|306812820|ref|ZP_07447013.1| excinuclease ABC subunit B [Escherichia coli NC101]
 gi|307137402|ref|ZP_07496758.1| excinuclease ABC subunit B [Escherichia coli H736]
 gi|307313811|ref|ZP_07593428.1| excinuclease ABC, B subunit [Escherichia coli W]
 gi|309797956|ref|ZP_07692335.1| excinuclease ABC subunit B [Escherichia coli MS 145-7]
 gi|312967823|ref|ZP_07782036.1| excinuclease ABC, B subunit [Escherichia coli 2362-75]
 gi|312970853|ref|ZP_07785032.1| excinuclease ABC, B subunit [Escherichia coli 1827-70]
 gi|331641292|ref|ZP_08342427.1| excinuclease ABC subunit B [Escherichia coli H736]
 gi|331645996|ref|ZP_08347099.1| excinuclease ABC subunit B [Escherichia coli M605]
 gi|331651782|ref|ZP_08352801.1| excinuclease ABC subunit B [Escherichia coli M718]
 gi|331662134|ref|ZP_08363057.1| excinuclease ABC subunit B [Escherichia coli TA143]
 gi|331667142|ref|ZP_08368007.1| excinuclease ABC subunit B [Escherichia coli TA271]
 gi|331672291|ref|ZP_08373082.1| excinuclease ABC subunit B [Escherichia coli TA280]
 gi|331676513|ref|ZP_08377209.1| excinuclease ABC subunit B [Escherichia coli H591]
 gi|331682286|ref|ZP_08382905.1| excinuclease ABC subunit B [Escherichia coli H299]
 gi|332282378|ref|ZP_08394791.1| excision nuclease subunit B [Shigella sp. D9]
 gi|67474768|sp|P0A8F8|UVRB_ECOLI RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|67474771|sp|P0A8F9|UVRB_ECO57 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|90111050|sp|Q324B3|UVRB_SHIBS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|90111052|sp|Q3Z405|UVRB_SHISS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|122424523|sp|Q1REF1|UVRB_ECOUT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189037965|sp|A7ZJI8|UVRB_ECO24 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189037966|sp|A7ZY35|UVRB_ECOHS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189037967|sp|A1A921|UVRB_ECOK1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189037968|sp|B1IXI9|UVRB_ECOLC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226695563|sp|B7MGN7|UVRB_ECO45 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226695565|sp|B7M751|UVRB_ECO8A RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226695566|sp|B7NA78|UVRB_ECOLU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226695567|sp|B1LM70|UVRB_ECOSM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226698334|sp|B5YRL8|UVRB_ECO5E RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226698335|sp|B6I7T4|UVRB_ECOSE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|229557961|sp|B1X7A9|UVRB_ECODH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238691698|sp|B2TVF1|UVRB_SHIB3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|254764905|sp|B7ULX6|UVRB_ECO27 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|254764906|sp|B7LC61|UVRB_ECO55 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|259710324|sp|C4ZXV1|UVRB_ECOBW RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|12513768|gb|AAG55150.1|AE005259_1 DNA repair; excision nuclease subunit B [Escherichia coli O157:H7
           str. EDL933]
 gi|43286|emb|CAA27357.1| unnamed protein product [Escherichia coli]
 gi|1786996|gb|AAC73866.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli str. K-12 substr. MG1655]
 gi|13360316|dbj|BAB34280.1| excision nuclease subunit B [Escherichia coli O157:H7 str. Sakai]
 gi|73854800|gb|AAZ87507.1| DNA repair excision nuclease subunit B [Shigella sonnei Ss046]
 gi|81244637|gb|ABB65345.1| excision nuclease subunit B [Shigella boydii Sb227]
 gi|85674762|dbj|BAA35437.2| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli str. K12 substr. W3110]
 gi|91071382|gb|ABE06263.1| excision nuclease subunit B [Escherichia coli UTI89]
 gi|115512086|gb|ABJ00161.1| excision nuclease subunit B [Escherichia coli APEC O1]
 gi|157065934|gb|ABV05189.1| excinuclease ABC, B subunit [Escherichia coli HS]
 gi|157077304|gb|ABV17012.1| excinuclease ABC, B subunit [Escherichia coli E24377A]
 gi|169755793|gb|ACA78492.1| excinuclease ABC, B subunit [Escherichia coli ATCC 8739]
 gi|169888273|gb|ACB01980.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli str. K-12 substr. DH10B]
 gi|170520014|gb|ACB18192.1| excinuclease ABC, B subunit [Escherichia coli SMS-3-5]
 gi|187431123|gb|ACD10397.1| excinuclease ABC, B subunit [Shigella boydii CDC 3083-94]
 gi|188489175|gb|EDU64278.1| excinuclease ABC, B subunit [Escherichia coli 53638]
 gi|189002731|gb|EDU71717.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4076]
 gi|189355854|gb|EDU74273.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4401]
 gi|189363475|gb|EDU81894.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4486]
 gi|189365676|gb|EDU84092.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4501]
 gi|189373107|gb|EDU91523.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC869]
 gi|189377767|gb|EDU96183.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC508]
 gi|190900679|gb|EDV60478.1| excinuclease ABC, B subunit [Escherichia coli B7A]
 gi|192928872|gb|EDV82485.1| excinuclease ABC, B subunit [Escherichia coli E22]
 gi|192957313|gb|EDV87761.1| excinuclease ABC, B subunit [Escherichia coli E110019]
 gi|194413739|gb|EDX30018.1| excinuclease ABC, B subunit [Escherichia coli B171]
 gi|194422603|gb|EDX38600.1| excinuclease ABC, B subunit [Escherichia coli 101-1]
 gi|208731991|gb|EDZ80679.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208737654|gb|EDZ85337.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209159752|gb|ACI37185.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. EC4115]
 gi|209776088|gb|ACI86356.1| excision nuclease subunit B [Escherichia coli]
 gi|209776090|gb|ACI86357.1| excision nuclease subunit B [Escherichia coli]
 gi|209776092|gb|ACI86358.1| excision nuclease subunit B [Escherichia coli]
 gi|209776094|gb|ACI86359.1| excision nuclease subunit B [Escherichia coli]
 gi|209776096|gb|ACI86360.1| excision nuclease subunit B [Escherichia coli]
 gi|209911283|dbj|BAG76357.1| DNA repair excision nuclease subunit B [Escherichia coli SE11]
 gi|215263939|emb|CAS08279.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli O127:H6 str. E2348/69]
 gi|217320636|gb|EEC29060.1| excinuclease ABC, B subunit [Escherichia coli O157:H7 str. TW14588]
 gi|218350984|emb|CAU96688.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli 55989]
 gi|218360130|emb|CAQ97679.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli IAI1]
 gi|218364453|emb|CAR02135.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli S88]
 gi|218431253|emb|CAR12130.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli UMN026]
 gi|238861048|gb|ACR63046.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli BW2952]
 gi|242376571|emb|CAQ31280.1| DNA repair; excision nuclease subunit B, subunit of UvrABC
           Nucleotide Excision Repair Complex [Escherichia coli
           BL21(DE3)]
 gi|253325262|gb|ACT29864.1| excinuclease ABC, B subunit [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253972757|gb|ACT38428.1| excinuclease ABC subunit B [Escherichia coli B str. REL606]
 gi|253976977|gb|ACT42647.1| excinuclease ABC subunit B [Escherichia coli BL21(DE3)]
 gi|254591373|gb|ACT70734.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli O157:H7 str. TW14359]
 gi|257752719|dbj|BAI24221.1| excinuclease UvrABC subunit UvrB [Escherichia coli O26:H11 str.
           11368]
 gi|257758168|dbj|BAI29665.1| excinuclease UvrABC subunit UvrB [Escherichia coli O103:H2 str.
           12009]
 gi|257763302|dbj|BAI34797.1| excinuclease UvrABC subunit UvrB [Escherichia coli O111:H- str.
           11128]
 gi|260450074|gb|ACX40496.1| excinuclease ABC, B subunit [Escherichia coli DH1]
 gi|281177915|dbj|BAI54245.1| DNA repair excision nuclease subunit B [Escherichia coli SE15]
 gi|284920628|emb|CBG33690.1| UvrABC system protein B (excinuclease ABC subunit B) [Escherichia
           coli 042]
 gi|290761649|gb|ADD55610.1| UvrABC system protein B [Escherichia coli O55:H7 str. CB9615]
 gi|291323859|gb|EFE63281.1| excinuclease ABC [Escherichia coli B088]
 gi|291428666|gb|EFF01691.1| excinuclease ABC subunit B [Escherichia coli FVEC1412]
 gi|291434117|gb|EFF07090.1| excinuclease ABC [Escherichia coli B185]
 gi|291469625|gb|EFF12109.1| excinuclease ABC [Escherichia coli B354]
 gi|294493323|gb|ADE92079.1| excinuclease ABC, B subunit [Escherichia coli IHE3034]
 gi|298279559|gb|EFI21067.1| UvrABC system protein B [Escherichia coli FVEC1302]
 gi|299880355|gb|EFI88566.1| excinuclease ABC subunit B [Escherichia coli MS 196-1]
 gi|300315592|gb|EFJ65376.1| excinuclease ABC subunit B [Escherichia coli MS 175-1]
 gi|300358056|gb|EFJ73926.1| excinuclease ABC subunit B [Escherichia coli MS 198-1]
 gi|300398541|gb|EFJ82079.1| excinuclease ABC subunit B [Escherichia coli MS 69-1]
 gi|300401151|gb|EFJ84689.1| excinuclease ABC subunit B [Escherichia coli MS 84-1]
 gi|300412973|gb|EFJ96283.1| excinuclease ABC subunit B [Escherichia coli MS 115-1]
 gi|300420906|gb|EFK04217.1| excinuclease ABC subunit B [Escherichia coli MS 182-1]
 gi|300453219|gb|EFK16839.1| excinuclease ABC subunit B [Escherichia coli MS 116-1]
 gi|300462619|gb|EFK26112.1| excinuclease ABC subunit B [Escherichia coli MS 187-1]
 gi|300524479|gb|EFK45548.1| excinuclease ABC subunit B [Escherichia coli MS 119-7]
 gi|300531113|gb|EFK52175.1| excinuclease ABC subunit B [Escherichia coli MS 107-1]
 gi|300845536|gb|EFK73296.1| excinuclease ABC subunit B [Escherichia coli MS 78-1]
 gi|301075545|gb|EFK90351.1| excinuclease ABC subunit B [Escherichia coli MS 146-1]
 gi|305853583|gb|EFM54022.1| excinuclease ABC subunit B [Escherichia coli NC101]
 gi|306906451|gb|EFN36965.1| excinuclease ABC, B subunit [Escherichia coli W]
 gi|307627812|gb|ADN72116.1| excinuclease ABC subunit B [Escherichia coli UM146]
 gi|308118444|gb|EFO55706.1| excinuclease ABC subunit B [Escherichia coli MS 145-7]
 gi|310336614|gb|EFQ01781.1| excinuclease ABC, B subunit [Escherichia coli 1827-70]
 gi|312287549|gb|EFR15456.1| excinuclease ABC, B subunit [Escherichia coli 2362-75]
 gi|315060015|gb|ADT74342.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli W]
 gi|315135429|dbj|BAJ42588.1| UvrABC system protein B [Escherichia coli DH1]
 gi|315257765|gb|EFU37733.1| excinuclease ABC subunit B [Escherichia coli MS 85-1]
 gi|315287196|gb|EFU46608.1| excinuclease ABC subunit B [Escherichia coli MS 110-3]
 gi|315619778|gb|EFV00297.1| excinuclease ABC, B subunit [Escherichia coli 3431]
 gi|320175200|gb|EFW50309.1| Excinuclease ABC subunit B [Shigella dysenteriae CDC 74-1112]
 gi|320183268|gb|EFW58123.1| Excinuclease ABC subunit B [Shigella flexneri CDC 796-83]
 gi|320192747|gb|EFW67388.1| Excinuclease ABC subunit B [Escherichia coli O157:H7 str. EC1212]
 gi|320198968|gb|EFW73565.1| Excinuclease ABC subunit B [Escherichia coli EC4100B]
 gi|320637640|gb|EFX07432.1| excinuclease ABC subunit B [Escherichia coli O157:H7 str. G5101]
 gi|320642767|gb|EFX11968.1| excinuclease ABC subunit B [Escherichia coli O157:H- str. 493-89]
 gi|320648223|gb|EFX16878.1| excinuclease ABC subunit B [Escherichia coli O157:H- str. H 2687]
 gi|320654060|gb|EFX22128.1| excinuclease ABC subunit B [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320659683|gb|EFX27239.1| excinuclease ABC subunit B [Escherichia coli O55:H7 str. USDA 5905]
 gi|320664153|gb|EFX31304.1| excinuclease ABC subunit B [Escherichia coli O157:H7 str. LSU-61]
 gi|323155700|gb|EFZ41871.1| excinuclease ABC, B subunit [Escherichia coli EPECa14]
 gi|323159708|gb|EFZ45686.1| excinuclease ABC, B subunit [Escherichia coli E128010]
 gi|323165696|gb|EFZ51482.1| excinuclease ABC, B subunit [Shigella sonnei 53G]
 gi|323172105|gb|EFZ57744.1| excinuclease ABC, B subunit [Escherichia coli LT-68]
 gi|323175603|gb|EFZ61198.1| excinuclease ABC, B subunit [Escherichia coli 1180]
 gi|323185066|gb|EFZ70432.1| excinuclease ABC, B subunit [Escherichia coli 1357]
 gi|323190905|gb|EFZ76172.1| excinuclease ABC, B subunit [Escherichia coli RN587/1]
 gi|323379426|gb|ADX51694.1| excinuclease ABC, B subunit [Escherichia coli KO11]
 gi|323938267|gb|EGB34526.1| excinuclease ABC [Escherichia coli E1520]
 gi|323947064|gb|EGB43077.1| excinuclease ABC [Escherichia coli H120]
 gi|323953558|gb|EGB49424.1| excinuclease ABC [Escherichia coli H252]
 gi|323958068|gb|EGB53777.1| excinuclease ABC [Escherichia coli H263]
 gi|323963026|gb|EGB58597.1| excinuclease ABC [Escherichia coli H489]
 gi|326338335|gb|EGD62164.1| Excinuclease ABC subunit B [Escherichia coli O157:H7 str. 1125]
 gi|326346313|gb|EGD70051.1| Excinuclease ABC subunit B [Escherichia coli O157:H7 str. 1044]
 gi|330910524|gb|EGH39034.1| excinuclease ABC subunit B [Escherichia coli AA86]
 gi|331038090|gb|EGI10310.1| excinuclease ABC subunit B [Escherichia coli H736]
 gi|331044748|gb|EGI16875.1| excinuclease ABC subunit B [Escherichia coli M605]
 gi|331050060|gb|EGI22118.1| excinuclease ABC subunit B [Escherichia coli M718]
 gi|331060556|gb|EGI32520.1| excinuclease ABC subunit B [Escherichia coli TA143]
 gi|331065498|gb|EGI37391.1| excinuclease ABC subunit B [Escherichia coli TA271]
 gi|331070486|gb|EGI41850.1| excinuclease ABC subunit B [Escherichia coli TA280]
 gi|331075202|gb|EGI46500.1| excinuclease ABC subunit B [Escherichia coli H591]
 gi|331079917|gb|EGI51096.1| excinuclease ABC subunit B [Escherichia coli H299]
 gi|332097545|gb|EGJ02525.1| excinuclease ABC, B subunit [Shigella boydii 3594-74]
 gi|332104730|gb|EGJ08076.1| excision nuclease subunit B [Shigella sp. D9]
 gi|332342111|gb|AEE55445.1| excinuclease ABC, B subunit UvrB [Escherichia coli UMNK88]
          Length = 673

 Score =  847 bits (2189), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 477/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|188586647|ref|YP_001918192.1| Excinuclease ABC subunit B [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|229557963|sp|B2A713|UVRB_NATTJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|179351334|gb|ACB85604.1| Excinuclease ABC subunit B [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 658

 Score =  847 bits (2189), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/660 (55%), Positives = 481/660 (72%), Gaps = 2/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++Q+D+   GDQP A+ +L + ++     Q LLGVTGSGKTFTMA VI+ +QRP +
Sbjct: 1   MNEFKLQSDFSLEGDQPKAVDELCESLNGGNSHQTLLGVTGSGKTFTMANVIQRLQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL  EFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SIN++ID+
Sbjct: 61  VIAHNKTLAAQLCGEFKEFFPENAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+GS E Y + ++ L+ G   ++ E+L  LV  QY
Sbjct: 121 LRHSATSALFERRDVIIVASVSCIYGLGSPEEYREQVLSLRCGMEKDRDEILKGLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD IE+FP+   + A R+ +FG++IE I+E   LTG+ +     +
Sbjct: 181 SRNDVNFTRGTFRVRGDVIEVFPASYTETAVRIELFGDEIERITEIDTLTGEILGERNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+VT R  L  A++ I+EEL  +L  L+++G+ +EA+RLEQR  YDLEML+  G
Sbjct: 241 AIFPASHFVTRRSKLEKAIESIQEELHEQLEYLKRQGKAVEAKRLEQRTNYDLEMLQEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+L GR  G  P  L +Y P+D L+ VDESH+TIPQI GMY GD  RK  L
Sbjct: 301 FCQGIENYSRHLIGRPAGSRPYCLIDYFPDDYLMVVDESHMTIPQIRGMYAGDMSRKQNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS +DNRPL+F+E+  +    I VSATPG +E E  +  IVEQIIRPTGLVDP
Sbjct: 361 VDHGFRLPSALDNRPLKFQEFEKMINQNIYVSATPGPYEKEHSE-RIVEQIIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
             E+R  + Q++D+Y EIN    +  R+L+T LTK+MAEDLT+YL E  IRVRYMHSE+ 
Sbjct: 420 ETEVRPVKGQIDDLYSEINKRTDRNERVLVTTLTKKMAEDLTDYLREMGIRVRYMHSEID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEG+LR + SLIQT+GR
Sbjct: 480 TLERMEIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRDERSLIQTMGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN +VI+Y D IT S++ AIDET RRREKQ+E N +HNI PQ+V++K+ +VI+   
Sbjct: 540 AARNVNGRVIMYGDAITDSMRRAIDETNRRREKQIEFNARHNITPQTVQKKVHDVIEATR 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             +  T   + +  Q  +S K+ K  +  L+++M  AA  L FE+AA +RD I  LK++ 
Sbjct: 600 SAEDETEAATPENIQE-MSAKERKELIAKLQEEMKQAAKELEFEKAAELRDLIMELKTAQ 658


>gi|89056093|ref|YP_511544.1| excinuclease ABC subunit B [Jannaschia sp. CCS1]
 gi|88865642|gb|ABD56519.1| Excinuclease ABC subunit B [Jannaschia sp. CCS1]
          Length = 731

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/671 (63%), Positives = 527/671 (78%), Gaps = 1/671 (0%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFT 184
              +       +    F +QT++ P+GDQP AIA+L +GI   E+ Q+LLG TG+GKTFT
Sbjct: 15  AVDALRAQLKMEGGKAFVLQTEFEPAGDQPTAIAELSEGIREGERDQVLLGATGTGKTFT 74

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           MAK+IE  QRPAI++APNK LAAQLY+EFKNFFP NAVEYFVSYYDYYQPEAYV R+DTY
Sbjct: 75  MAKMIEETQRPAIILAPNKTLAAQLYAEFKNFFPENAVEYFVSYYDYYQPEAYVARSDTY 134

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304
           IEKES INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   L  G   +
Sbjct: 135 IEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLHAGREYD 194

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           Q+++++ LV QQY+R D    RG FRV GDS+E++P+HL+D AW++S FG ++E I+EF 
Sbjct: 195 QRKVIADLVAQQYRRNDAAFQRGCFRVRGDSLEVWPAHLDDRAWKLSFFGEELESITEFD 254

Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
           PLTGQK    E I++YANSHYVTPRPT+  AMK IK EL MRL ++  EG+LLEAQRLEQ
Sbjct: 255 PLTGQKTDTFEKIRVYANSHYVTPRPTMQQAMKGIKSELAMRLKQMIDEGKLLEAQRLEQ 314

Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484
           R  +DLEMLE TG C  IENYSRYLTGR PGEPPPTLFEYIP+++++F DESHV++PQI 
Sbjct: 315 RTNFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEYIPDNAIVFADESHVSVPQIG 374

Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544
           GMYRGD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ  G+ 
Sbjct: 375 GMYRGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVF 434

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
            EQ+IRPTGL+DP +EIR    QV+D+ DE+   A  G R L+T LTKRMAEDLTEY++E
Sbjct: 435 TEQVIRPTGLIDPQIEIRPVDMQVDDLLDEVRKVAADGYRTLVTTLTKRMAEDLTEYMHE 494

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           + IRVRYMHS++ TLERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGF
Sbjct: 495 QGIRVRYMHSDIDTLERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGF 554

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
           LRS+TSLIQTIGRAARN + +VI+YAD IT S++ A+ ET RRR KQL +N++H I P +
Sbjct: 555 LRSETSLIQTIGRAARNADGRVIMYADKITGSMERAMRETERRRVKQLAYNEEHGITPAT 614

Query: 725 VKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           +K+ + +++  +   D   + ++    +  L      AHL  LR +M  AA+NL FEEAA
Sbjct: 615 IKKNVDDILMGVYQGDTDQSRVTAKVDK-PLVGANLAAHLDGLRDKMRKAAENLEFEEAA 673

Query: 785 RIRDEIKRLKS 795
           R+RDE+KRL++
Sbjct: 674 RLRDEVKRLET 684


>gi|218699151|ref|YP_002406780.1| excinuclease ABC subunit B [Escherichia coli IAI39]
 gi|300939813|ref|ZP_07154451.1| excinuclease ABC subunit B [Escherichia coli MS 21-1]
 gi|226695564|sp|B7NNK9|UVRB_ECO7I RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|218369137|emb|CAR16892.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli IAI39]
 gi|300455345|gb|EFK18838.1| excinuclease ABC subunit B [Escherichia coli MS 21-1]
          Length = 673

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/664 (56%), Positives = 477/664 (71%), Gaps = 8/664 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLK 794
            +L+
Sbjct: 663 HQLR 666


>gi|322516338|ref|ZP_08069264.1| excision endonuclease subunit UvrB [Streptococcus vestibularis ATCC
           49124]
 gi|322125176|gb|EFX96565.1| excision endonuclease subunit UvrB [Streptococcus vestibularis ATCC
           49124]
          Length = 668

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/660 (53%), Positives = 481/660 (72%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K+   F + + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI+ + +P
Sbjct: 10  KENNQFHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIQRVNKP 69

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYD+YQPEAYVP +DTYIEK+SS+N++I
Sbjct: 70  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSVNDEI 129

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT +LLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  
Sbjct: 130 DKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDI 189

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE
Sbjct: 190 QFERNDIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRICEIESLTGRNLGEVE 249

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H++T    +  A+K I EE++ ++ + E EG+L+EAQR+ QR  YD+EML  
Sbjct: 250 HLVLFPATHFMTNEEHMEEAIKNIMEEMEAQVKQFEAEGKLIEAQRIRQRTEYDVEMLRE 309

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR  GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 310 MGYTNGVENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKK 369

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +VEQIIRPTGL+
Sbjct: 370 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLL 428

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R    Q++D+  EIN   ++G R+ +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 429 DPEVEVRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSD 488

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 489 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 548

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN    VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I  
Sbjct: 549 GRAARNSEGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISI 608

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               +A     +++    +++KK+ +  +K L+KQMH AA+ L+FE AA+IRD +  LKS
Sbjct: 609 TKANEAEVAEDTVN--YSAMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLELKS 666


>gi|251782717|ref|YP_002997020.1| excinuclease ABC subunit B [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391347|dbj|BAH81806.1| excinuclease ABC subunit B [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 663

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/659 (53%), Positives = 475/659 (72%), Gaps = 3/659 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +D   F + + Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P
Sbjct: 5   RDDKPFHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVINKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT +LLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  
Sbjct: 125 DKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ I  V+
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKTIGEVD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL+ +L   E EG+LLEAQRL QR  YD+EML  
Sbjct: 245 HLILFPATHFVTNDEHMEQSIAKIQAELEEQLKVFEAEGKLLEAQRLRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR  GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRAAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ    IVEQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQT-DTIVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +++R +  Q++D+  EIN   ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEIDVRPSMGQMDDLLGEINQRVERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN +  VI+YAD +T+S+Q AIDET RRRE Q+ +N+ H I PQ++K+ I ++I  
Sbjct: 544 GRAARNADGHVIMYADKVTESMQRAIDETARRREIQMAYNEAHGIIPQTIKKDIRDLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               ++     ++D    ++S+ + K  +K+L+KQM  AA+ L+FE AA+IRD I  LK
Sbjct: 604 SKAAESDVAETAVD--YETMSRSERKEAIKTLQKQMQEAAELLDFELAAQIRDMILELK 660


>gi|323127535|gb|ADX24832.1| excinuclease ABC subunit B [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 663

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/659 (53%), Positives = 475/659 (72%), Gaps = 3/659 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +D   F + + Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P
Sbjct: 5   RDDKPFHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVINKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT +LLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  
Sbjct: 125 DKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ I  V+
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKTIGEVD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL+ +L   E EG+LLEAQRL QR  YD+EML  
Sbjct: 245 HLILFPATHFVTNDEHMEQSIAKIQAELEEQLKVFETEGKLLEAQRLRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR  GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRAAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ    IVEQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQT-DTIVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +++R +  Q++D+  EIN   ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEIDVRPSMGQMDDLLGEINQRVERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN +  VI+YAD +T+S+Q AIDET RRRE Q+ +N+ H I PQ++K+ I ++I  
Sbjct: 544 GRAARNADGHVIMYADKVTESMQRAIDETARRREIQMAYNEAHGIIPQTIKKDIRDLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               ++     ++D    ++S+ + K  +K+L+KQM  AA+ L+FE AA+IRD I  LK
Sbjct: 604 SKAAESDVAETAVD--YETMSRSERKEAIKTLQKQMQEAAELLDFELAAQIRDMILELK 660


>gi|134300897|ref|YP_001114393.1| excinuclease ABC subunit B [Desulfotomaculum reducens MI-1]
 gi|134053597|gb|ABO51568.1| Excinuclease ABC subunit B [Desulfotomaculum reducens MI-1]
          Length = 672

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/654 (53%), Positives = 478/654 (73%), Gaps = 2/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++D+ P GDQP AI +L+ GI    + Q+LLG TG+GKTFTMA +I+ ++RP +++A
Sbjct: 3   FKLKSDFSPRGDQPRAIEKLVAGIDKGLRHQVLLGATGTGKTFTMANIIQEVKRPTLILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL SE K FFP N+VEYFVSY+DYYQPEAY+P TDTYIEK+SS+N++ID++RH
Sbjct: 63  PNKTLAAQLCSEMKEFFPENSVEYFVSYFDYYQPEAYIPHTDTYIEKDSSLNDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D I+V+SVSCIYG+G+ E+Y  +++ L++G + ++  +L  LV  QY+R 
Sbjct: 123 SATTALLERRDVIIVASVSCIYGLGNPETYRDLVLSLRVGGTYDRDAILRKLVDIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD IEIFP++  + A RV +FG++++ + E   +TG+ +   + I ++
Sbjct: 183 DIDFSRGKFRVRGDVIEIFPANASERALRVELFGDEVDRLLEIDVVTGEILGQRQHIAVF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I+ EL+ RL EL    +LLEAQRL+QR  YDLEM+   G C 
Sbjct: 243 PASHFVTAEDNMKRAITTIEAELEQRLQELRAADKLLEAQRLQQRTQYDLEMMAEVGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGE P TL ++ PED LL +DESHV +PQI GMY GD  RK TL E+
Sbjct: 303 GIENYSRHLTGRAPGESPFTLLDFFPEDWLLIIDESHVAVPQIGGMYEGDRSRKTTLVEH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       I VSATPG +E E  Q  IVEQIIRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLKFKEFEEKVNQVIYVSATPGKYEFEH-QEQIVEQIIRPTGLIDPEIF 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EI L  ++  R+L+T LTK+MAEDLT+Y  E  +RVRY+HS++ T+E
Sbjct: 422 IRPTKGQIDDLLGEIRLRVERDERVLVTTLTKKMAEDLTDYFKENGVRVRYLHSDIHTME 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS+ SLIQTIGRAAR
Sbjct: 482 RMEILRDLRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AI ET RRR+ Q+E+N+KHNI P+++++ I +VI+     +
Sbjct: 542 NAEGRVIMYADKMTDSMKKAIGETNRRRKIQMEYNRKHNITPETIRKAIRDVIEATRAAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                ++  ++   L+K + K  +  L K+M  +A +L FE AA++RD +  L+
Sbjct: 602 EKAPYVA-QSKAGKLTKTELKKMIAKLEKEMKESAKHLEFERAAQLRDALIELR 654


>gi|187923393|ref|YP_001895035.1| excinuclease ABC subunit B [Burkholderia phytofirmans PsJN]
 gi|187714587|gb|ACD15811.1| excinuclease ABC, B subunit [Burkholderia phytofirmans PsJN]
          Length = 697

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/671 (54%), Positives = 481/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 22  EGSPFQLYQPYPPAGDQPTAIDTLVEGVEDGLSFQTLLGVTGSGKTFTMANTIARLGRPA 81

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 82  IVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 141

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y +MI+ L+ GD + Q+++++ L+  Q
Sbjct: 142 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHKMILTLRTGDKLGQRDIIARLIAMQ 201

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RG+FRV GD+I+IFP+   ++A RV +F ++IE +  F PLTG+  + +  
Sbjct: 202 YNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEIETLQLFDPLTGRVRQKIPR 261

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK EL+ RL      G+L+EAQRLEQR  +DLEML+  
Sbjct: 262 FTVYPSSHYVTPRDTVVRAVETIKAELRERLEFFYSGGKLVEAQRLEQRTRFDLEMLQEL 321

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 322 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYNGDRARKEN 381

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G + EQ++RPTGLVD
Sbjct: 382 LVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-QKTAGQVAEQLVRPTGLVD 440

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R AR+QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 441 PEIEVRPARSQVDDVLGEINERVKAGDRVLVTVLTKRMAEQLTEFLADHGVKVRYLHSDI 500

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 501 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 560

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILY D IT S++ AIDET RRR KQ+  N  + I P+ V ++I ++ID +
Sbjct: 561 RAARNVNGKAILYGDKITDSMRRAIDETERRRNKQIAFNLANGITPRGVVKRIRDIIDGV 620

Query: 737 LLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    LK L KQM   A NL FE+AA+ RD++  L
Sbjct: 621 YNVDDARAELKEQQARAKFEDMSEKQLAKELKRLEKQMMEHAKNLEFEKAAQTRDQLALL 680

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 681 RQRVFGANVGD 691


>gi|320547053|ref|ZP_08041351.1| excision endonuclease subunit UvrB [Streptococcus equinus ATCC
           9812]
 gi|320448290|gb|EFW89035.1| excision endonuclease subunit UvrB [Streptococcus equinus ATCC
           9812]
          Length = 663

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/655 (54%), Positives = 476/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYEPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIQEIESLTGKVLGEVEHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I EE++ ++ + E+EG+L+EAQR+ QR  YD+EML   G   
Sbjct: 250 PATHFMTNEEHMEHAIKNILEEMEEQVKKFEEEGKLIEAQRIRQRTEYDVEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ VDESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMVDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +ELEQ    IVEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYELEQT-DTIVEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT+S+Q A+DET RRRE Q+ +N++H I PQ++K+ I ++I      +
Sbjct: 549 NSEGHVIMYADKITESMQKAMDETARRREIQMRYNEEHGIIPQTIKKDIRDLISISKANE 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                 + D    S++K + K  +K L+KQMH AA+ L+FE AA++RD +  LK+
Sbjct: 609 TDVAEDTPD--YSSMNKTERKEAIKKLQKQMHEAAEMLDFELAAQLRDMVLELKA 661


>gi|324116202|gb|EGC10124.1| excinuclease ABC [Escherichia coli E1167]
          Length = 673

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 477/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSCGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|302038376|ref|YP_003798698.1| excinuclease ABC subunit B [Candidatus Nitrospira defluvii]
 gi|300606440|emb|CBK42773.1| Excinuclease ABC, subunit B [Candidatus Nitrospira defluvii]
          Length = 665

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/657 (53%), Positives = 470/657 (71%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++   + P GDQ  AI +L  GI + ++ Q LLGVTGSGKTFTMA V+E +Q+P +
Sbjct: 1   MPPFKLDAPFKPCGDQGQAIEKLTSGILAGKQHQALLGVTGSGKTFTMANVVERVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+  NK LA QLY EFK FFPHNAVEYF+SYYDYYQPEAY+P++DTYI K++SIN+ ID+
Sbjct: 61  VLVHNKTLAGQLYQEFKQFFPHNAVEYFISYYDYYQPEAYIPQSDTYIAKDASINDAIDQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRH+AT SLL+RND ++VSSVSCIYG+GS E Y  M+V L+ G    ++++L+ LV+ QY
Sbjct: 121 MRHAATTSLLQRNDVLIVSSVSCIYGLGSPEVYHDMLVYLEEGMETRREKILAKLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFR  GD IEIFP+  E  + R+ +FG+ ++ I E  PLTG+ +  +  I
Sbjct: 181 ARNDVDFHRGTFRARGDVIEIFPASSEAKSVRIELFGDVVDAIHEIDPLTGKSLGKLPKI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY N+HY+        A+  I+EEL  R+   +K G+LLEAQR+EQR  +DLEM+   G
Sbjct: 241 AIYPNTHYLIAPDRYERAITGIEEELDARVAAFKKNGQLLEAQRIEQRTKFDLEMIRAMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L+GR PG+PPPTL +Y P+D LL VDESH T+PQ+ GMY GDF RK TL
Sbjct: 301 YCHGIENYSRHLSGRAPGDPPPTLLDYFPKDFLLIVDESHATVPQVGGMYEGDFSRKRTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL+F E+  +    I VSATPG +ELE  +G ++EQIIRPTGL+DP
Sbjct: 361 VDYGFRLPSAVDNRPLKFAEFERMLKQVIYVSATPGPYELEHAKGEVIEQIIRPTGLMDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++RSA+ QV+++  E+   A +G R+L+T LTKRMAEDLTEY ++  ++VRY+HS++K
Sbjct: 421 LIDVRSAKGQVDNLLAEVRAEAAKGNRVLVTTLTKRMAEDLTEYYHDLGVKVRYLHSDIK 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS  SLIQT GR
Sbjct: 481 TLERAEIIRDLRRGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSHRSLIQTAGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN++ +VI Y DTIT S++ A+DET RRR  Q  +N+ H I P+S+K++I  +     
Sbjct: 541 AARNLDGRVIFYGDTITDSMRRAMDETARRRHIQEAYNEAHGITPESIKKQIPVLDYATG 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             +     ++ ++     +    +  ++ L  +M  AA  L FE AA +R+ I+ L+
Sbjct: 601 AGNEGQLELAAESADAYGATGDTEQLIRRLEVEMKAAAKKLEFERAAELRNRIRTLR 657


>gi|154687631|ref|YP_001422792.1| excinuclease ABC subunit B [Bacillus amyloliquefaciens FZB42]
 gi|189037951|sp|A7Z985|UVRB_BACA2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|52673266|emb|CAH56506.1| UvrABC system protein B [Bacillus amyloliquefaciens FZB42]
 gi|154353482|gb|ABS75561.1| UvrB [Bacillus amyloliquefaciens FZB42]
          Length = 661

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/657 (54%), Positives = 470/657 (71%), Gaps = 2/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L+KGI    K Q L+G TG+GKTFT++ +I+ + +P +V+A
Sbjct: 5   FELVSKYQPQGDQPQAIEKLVKGIQEGRKHQTLMGATGTGKTFTVSNLIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y +M+V L+    +E+ ELL  LV  QY R 
Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYREMVVSLRPEMEIERNELLRKLVDIQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ + + + + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I++EL+ RL  + + G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTRAEKMEKAILNIEQELEERLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PG  P TL +Y P+D ++ VDESHVTIPQ+ GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       + VSATPG +E+E    +I EQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTPEMI-EQIIRPTGLLDPLID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N   +VI+YAD IT S+++AI+ET RRRE+Q   N+ H I PQ++ ++I +VI      E
Sbjct: 544 NAEGRVIMYADKITNSMEIAINETKRRREQQERFNEIHGITPQTINKEIRDVIRATQAAE 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D          +   ++KK+ +  ++ +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 DKEEYKTKAAPKLAKMTKKERQKVVEQMEHEMKEAARALDFERAAELRDLLLELKAE 660


>gi|329895722|ref|ZP_08271126.1| Excinuclease ABC subunit B [gamma proteobacterium IMCC3088]
 gi|328922198|gb|EGG29553.1| Excinuclease ABC subunit B [gamma proteobacterium IMCC3088]
          Length = 704

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/671 (55%), Positives = 481/671 (71%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++++ Y P+GDQP AI +L++G+ +    Q LLGVTGSGKTFTMA V+E +QRP IV
Sbjct: 33  KPFKVESKYKPAGDQPQAIEKLVEGVQAGLASQTLLGVTGSGKTFTMAHVVERLQRPTIV 92

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+N+ I++M
Sbjct: 93  MAHNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNDHIEQM 152

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ER DC+VV++VS IYG+G  +SY +M++ +  G+ + Q+ELL  L + QY 
Sbjct: 153 RLSATKALMERQDCLVVATVSAIYGLGDPKSYFKMVLHVSRGEIINQRELLHQLAELQYT 212

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RGT+RV GD I+IFP+  E  A R+ +F  +++ I  F PLTG     V  I 
Sbjct: 213 RNDIAFSRGTYRVRGDVIDIFPADSEKEAVRIELFDEEVDNIVLFDPLTGAIEAKVPRIT 272

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SHYVT R  +  A+  I+ EL+ RL +L    +L+EAQRL+QR  YD+EM+   G 
Sbjct: 273 IFPKSHYVTSRDIMLKAIDEIEIELEQRLKQLNDLNKLVEAQRLQQRTRYDIEMIRELGY 332

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           CQ +ENYSRYL+GR PG+PPPTLFEY+P+++L+ +DESHVTIPQI GMYRGD  RK TL 
Sbjct: 333 CQGVENYSRYLSGRGPGDPPPTLFEYLPDNALVIIDESHVTIPQIGGMYRGDRSRKETLV 392

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEEW  L P  I VSATPG++E EQ  G +VEQ++RPTGLVDP 
Sbjct: 393 EYGFRLPSALDNRPLKFEEWERLVPQAIFVSATPGNYE-EQHAGRVVEQVVRPTGLVDPT 451

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           ++IR A TQV+D+  EI+     G R+L+T LTKRMAEDLTEYL E  I+VRY+HS++ T
Sbjct: 452 IDIRPASTQVDDLLQEIHTVRATGQRVLVTTLTKRMAEDLTEYLAEHGIKVRYLHSDIDT 511

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 512 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSDRSLIQTIGRA 571

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL- 737
           ARN+  + ILYAD +T S+Q AIDET RRR KQL HN++H I P  + + + ++++    
Sbjct: 572 ARNLQGRAILYADKVTGSMQRAIDETERRRTKQLAHNEEHGIKPVGITKSVQDIMEGARR 631

Query: 738 ---------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                        A    +      SL+       +K L  +M   A NL FE+AA +RD
Sbjct: 632 MSTKRNAKGERKVAEVRAAYAQDMASLTPAALSRKIKQLETEMMEHAKNLEFEKAAAVRD 691

Query: 789 EIKRLKSSPYF 799
           +I   K   + 
Sbjct: 692 QITEYKQFAFM 702


>gi|46908661|ref|YP_015050.1| excinuclease ABC subunit B [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|67461969|sp|Q71WT9|UVRB_LISMF RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|46881933|gb|AAT05227.1| excinuclease ABC, B subunit [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 658

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/656 (53%), Positives = 468/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI QL+ G+    K Q LLG TG+GKTFT++ VI+ + +P +VMA
Sbjct: 5   FELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS   Y +M+V L++G  + + +LL  LV  QY R 
Sbjct: 125 SATAALFERRDVIIIASVSCIYGLGSPIEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++   R+  FG++IE I E   LTG+ I   E + I+
Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGEREHVSIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  IK EL+ RL  L  + +LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 245 PASHFVTRPDIMKKAIVNIKAELEDRLQVLRADNKLLEAQRLEQRTNYDLEMMEEMGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y P+D  + +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQIRGMFNGDQARKQMLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + +SATPG +ELE+    ++EQIIRPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEK-NPDVIEQIIRPTGLLDPIVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+ DEIN   ++  R+L+T LTK+M+EDLT YL E  ++V+Y+HSEVKTLE
Sbjct: 424 IRPIQGQIDDLMDEINNRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG +DV+VGINLLREG+D+PE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P+++K++I  +I      D
Sbjct: 544 NENGRVIMYADKMTDSMRNSIGETERRRKIQIEYNEKHGITPKTIKKEIRGIIAATSAAD 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                   D  +  +SKK+    ++ +  +M  AA  L+FE AA +RD +  +K+ 
Sbjct: 604 EREAVKQHDLSK--MSKKERDVFIEGMEHEMKEAAKALDFERAAELRDALLEIKAE 657


>gi|116628195|ref|YP_820814.1| excinuclease ABC subunit B [Streptococcus thermophilus LMD-9]
 gi|122267209|sp|Q03JK4|UVRB_STRTD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|116101472|gb|ABJ66618.1| Excinuclease ABC subunit B [Streptococcus thermophilus LMD-9]
          Length = 668

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/660 (53%), Positives = 483/660 (73%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K+   F + + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI+ + +P
Sbjct: 10  KEDNQFHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKP 69

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 70  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 129

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT +LLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  
Sbjct: 130 DKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDI 189

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE
Sbjct: 190 QFERNDIDFQRGKFRVRGDVVEIFPASRDENAFRVEFFGDEIDRICEIESLTGRNLGEVE 249

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H++T    +  A+K I EE+++++ + E EG+L+EAQR+ QR  YD+EML  
Sbjct: 250 HLVLFPATHFMTNEEHMEEAIKNIMEEMEVQVNQFEAEGKLIEAQRIRQRTEYDVEMLRE 309

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    IENYSR++ GR  GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 310 MGYTNGIENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKK 369

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +VEQIIRPTGL+
Sbjct: 370 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLL 428

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R    Q++D+  EIN   ++G R+ +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 429 DPEVEVRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSD 488

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 489 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 548

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN +  VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I  
Sbjct: 549 GRAARNSDGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISI 608

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               +A     +++    +++KK+ +  +K L+KQMH AA+ L+FE AA+IRD +  LKS
Sbjct: 609 TKTNEAEVAEDTVN--YSAMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLELKS 666


>gi|332799596|ref|YP_004461095.1| UvrABC system protein B [Tepidanaerobacter sp. Re1]
 gi|332697331|gb|AEE91788.1| UvrABC system protein B [Tepidanaerobacter sp. Re1]
          Length = 665

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/661 (54%), Positives = 484/661 (73%), Gaps = 2/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P GDQP AI +L +GI+   K Q LLG TG+GKTFT+A +I+ +QRP +
Sbjct: 1   MGKFEVVSEYIPRGDQPQAIQRLAEGINKGYKFQTLLGATGTGKTFTIAHLIQQVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAY+ +TDTYIEK++SIN++ID+
Sbjct: 61  VIAHNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D ++V+SVSCIY +GS   Y   +V L+ G  +++ E++  LV+ Q+
Sbjct: 121 LRHSATAALFERRDVVIVASVSCIYSLGSPIDYENQVVSLRSGMEIDRDEVVRKLVEIQF 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R +I   RGTFR+ GD +EIFP+   + A RV  FG+ I+ I EF  LTG+ I     +
Sbjct: 181 NRNEIDFHRGTFRLRGDILEIFPASFTEKAVRVEFFGDIIDRILEFDTLTGEIIGERNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHY TP+  +  A+K I+ EL+ RL EL+ +G++LEA RLEQR  YD+EML   G
Sbjct: 241 SIFPASHYATPKDKIEVAIKSIEMELEQRLAELKDQGKVLEAARLEQRTKYDIEMLREMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSR+L+GR  GE P TL +Y P+D L+ +DESHVT+PQI  M+ GD  RK +L
Sbjct: 301 YCKGIENYSRHLSGRKAGEAPFTLLDYFPKDYLIIIDESHVTLPQIHAMWAGDRSRKESL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL FEE+       I +SATP S+EL++    +VEQIIRPTGLVDP
Sbjct: 361 IEHGFRLPSAFDNRPLVFEEFEERVNQLIFLSATPASYELKKSAQ-VVEQIIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R  + Q++D+  EI L A++  R+L+T LTKRMAEDLT+YL E  IRVRY+HSE+ 
Sbjct: 420 EVEVRPVKGQIDDLIWEIKLRAKKNQRVLVTTLTKRMAEDLTDYLKEAGIRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++IIRDLRLGKFD LVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERLQIIRDLRLGKFDCLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ +VI+YADTIT+S+  AI ET RRR+ QL++NKKH I P +VK+ + ++I+   
Sbjct: 540 AARNVDGRVIMYADTITQSMARAISETNRRRKIQLDYNKKHGIVPTTVKKSVRDLIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + +  T  +  +     +SKK+ K  +++L +QM+ AA  L FE+AA +RD I  +K+  
Sbjct: 600 VAEEKTDYL-PEKDITKMSKKELKTFVENLERQMNDAAKKLEFEKAAELRDLIFEIKAEA 658

Query: 798 Y 798
           +
Sbjct: 659 F 659


>gi|331656796|ref|ZP_08357758.1| excinuclease ABC subunit B [Escherichia coli TA206]
 gi|331055044|gb|EGI27053.1| excinuclease ABC subunit B [Escherichia coli TA206]
          Length = 673

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 477/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADIQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|76787746|ref|YP_330102.1| excinuclease ABC subunit B [Streptococcus agalactiae A909]
 gi|77411086|ref|ZP_00787440.1| excinuclease ABC, B subunit [Streptococcus agalactiae CJB111]
 gi|90111055|sp|Q3K051|UVRB_STRA1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|76562803|gb|ABA45387.1| UvrABC system, B protein [Streptococcus agalactiae A909]
 gi|77162909|gb|EAO73866.1| excinuclease ABC, B subunit [Streptococcus agalactiae CJB111]
          Length = 663

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/660 (54%), Positives = 482/660 (73%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           KD   F++ + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI  + +P
Sbjct: 5   KDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL++LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNNLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ +  VE
Sbjct: 185 QFERNDIDFQRGKFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGRVLGEVE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I+  +H++T    +  A+  I+ E++ ++   EKEG+L+EAQR+ QR  YD+EML  
Sbjct: 245 HLAIFPATHFMTNDEHMEEAISKIQAEMENQVELFEKEGKLIEAQRIRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKE 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L  YGFRLPS +DNRPLR EE+       + VSATPG +E+ Q    +VEQIIRPTGL+
Sbjct: 365 MLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMGQT-DTVVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R +  Q++D+  EINL  ++G R  +T LTKRMAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN N  VI+YAD IT S+Q A+DET RRR  Q+++N+KH I PQ++K++I ++I  
Sbjct: 544 GRAARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKEIRDLIAI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               D+      +D    SLSKK+ +A +K+L+KQM  AA+ L+FE AA+IRD I +LK+
Sbjct: 604 TKSNDSDKPEKVVD--YSSLSKKERQAEIKALQKQMQEAAELLDFELAAQIRDVILKLKA 661


>gi|255261669|ref|ZP_05341011.1| excinuclease ABC, B subunit [Thalassiobium sp. R2A62]
 gi|255104004|gb|EET46678.1| excinuclease ABC, B subunit [Thalassiobium sp. R2A62]
          Length = 727

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/682 (61%), Positives = 528/682 (77%), Gaps = 6/682 (0%)

Query: 114 NPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLL 173
           + LL +       R        +    F+M TD+ P+GDQP AI +L  G++  E+ Q+L
Sbjct: 3   DALLHSPAPDVKTRP-----KLEGGIAFRMDTDFEPAGDQPTAIKELTTGVNEGERDQVL 57

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           LGVTGSGKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQ
Sbjct: 58  LGVTGSGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQ 117

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
           PEAYV R+DT+IEKES INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y  M
Sbjct: 118 PEAYVARSDTFIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYGAM 177

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
              +  G   +Q+++++ L+ QQYKR D    RGTFRV GDS+EIFP+HLED AW++S F
Sbjct: 178 TQDIIAGQEYDQRKVIADLIAQQYKRNDAAFQRGTFRVRGDSLEIFPAHLEDRAWKLSFF 237

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
           G ++E I+EF PLTG+K    + I++YANSHYVTP+PT+  A+  IK+EL+MRL +L  E
Sbjct: 238 GEELESITEFDPLTGEKTGTFDKIRVYANSHYVTPKPTMTQAVIGIKKELRMRLDQLVSE 297

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
           G+LLEAQRLEQR  +D+EMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F 
Sbjct: 298 GKLLEAQRLEQRCNFDIEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFA 357

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
           DESHV++PQI GMY+GD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP +I VSATP 
Sbjct: 358 DESHVSVPQIGGMYKGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSIFVSATPA 417

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
           +WE+EQ  G+  EQ+IRPTGL+DP +EIR    QV+D+ DE+   A  G R L+T LTKR
Sbjct: 418 AWEIEQTGGVFAEQVIRPTGLLDPEIEIRPVEMQVDDLLDEVRKVAADGYRTLVTTLTKR 477

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           M+EDLTEY++E+ IRVRYMHS++ T+ERIEI+RDLRLG FDVL+GINLLREGLDIPECGL
Sbjct: 478 MSEDLTEYMHEQGIRVRYMHSDIDTIERIEILRDLRLGAFDVLIGINLLREGLDIPECGL 537

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           VAILDADKEGFLRS+TSL+QTIGRAARN + +VI+YAD IT S++ A+ ET RRR KQ  
Sbjct: 538 VAILDADKEGFLRSETSLVQTIGRAARNADGRVIMYADRITGSMERAMGETNRRRVKQEA 597

Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
           +N +H I P +VK+ + +++  +   D   + ++    +  L+    +  L+ LR  M  
Sbjct: 598 YNIEHGITPATVKKNVEDILAGLYKGDTDQSRVTAQIDK-PLAGANLQTVLEGLRTDMRK 656

Query: 774 AADNLNFEEAARIRDEIKRLKS 795
           AA+NL FEEAA +RDE+KRL++
Sbjct: 657 AAENLEFEEAASLRDEVKRLET 678


>gi|296162458|ref|ZP_06845249.1| excinuclease ABC, B subunit [Burkholderia sp. Ch1-1]
 gi|295887271|gb|EFG67098.1| excinuclease ABC, B subunit [Burkholderia sp. Ch1-1]
          Length = 697

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/673 (54%), Positives = 484/673 (71%), Gaps = 4/673 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           S + + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + R
Sbjct: 20  SFEGSPFQLYQPYPPAGDQPTAIDTLVEGVEDGLAFQTLLGVTGSGKTFTMANTIARLGR 79

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE 
Sbjct: 80  PAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEH 139

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT+SL+ER D ++V++VS IYGIG+   Y +MI+ L+ GD + Q+++++ L+ 
Sbjct: 140 IEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHRMILTLRTGDKLGQRDIIARLIA 199

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R +    RG+FRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +
Sbjct: 200 MQYNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKI 259

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               +Y +SHYVTPR T+  A++ IK EL+ RL      G+L+EAQRLEQR  +DLEML+
Sbjct: 260 PRFTVYPSSHYVTPRDTVVRAVETIKTELRERLEFFYSGGKLVEAQRLEQRTRFDLEMLQ 319

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C+ IENYSR+ +G  PGEPPPTL +Y+P D+++ +DESHV I Q++GMY GD  RK
Sbjct: 320 ELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAIMMLDESHVLIGQLNGMYNGDRARK 379

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G + EQ++RPTGL
Sbjct: 380 ENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-QKTAGQVAEQLVRPTGL 438

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           VDP +E+R AR+QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++VRY+HS
Sbjct: 439 VDPEIEVRPARSQVDDVLGEINERVKVGDRVLVTVLTKRMAEQLTEFLADHGVKVRYLHS 498

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQT
Sbjct: 499 DIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQT 558

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARNVN K ILYAD +T S++ AIDET RRR KQ+  N ++ I P+ V ++I ++ID
Sbjct: 559 IGRAARNVNGKAILYADRVTDSMRRAIDETERRRNKQIAFNLENGITPRGVVKRIRDIID 618

Query: 735 PILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            +   D A   +      A+   +S+K+    LK L KQM   A NL FE+AA+ RD++ 
Sbjct: 619 GVYNVDDARAELKEQQARAKFEDMSEKQLAKELKRLEKQMMEHAKNLEFEKAAQTRDQLA 678

Query: 792 RLKSSPYFQGLDD 804
            L+   +   + D
Sbjct: 679 LLRQRVFGANVGD 691


>gi|222032510|emb|CAP75249.1| UvrABC system protein B [Escherichia coli LF82]
 gi|312945297|gb|ADR26124.1| excinuclease ABC subunit B [Escherichia coli O83:H1 str. NRG 857C]
 gi|315299290|gb|EFU58542.1| excinuclease ABC subunit B [Escherichia coli MS 16-3]
          Length = 673

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 476/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 739 EDAATTN--------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                          +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKLRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|294141104|ref|YP_003557082.1| excinuclease ABC subunit B [Shewanella violacea DSS12]
 gi|293327573|dbj|BAJ02304.1| excinuclease ABC, B subunit [Shewanella violacea DSS12]
          Length = 671

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/666 (55%), Positives = 491/666 (73%), Gaps = 6/666 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++++DY P+GDQP AIA+L+ GI S    Q LLGVTGSGKTFT+A VI+ M RP I+
Sbjct: 4   SIFRLESDYSPAGDQPKAIAKLVDGIESGLATQTLLGVTGSGKTFTIANVIKKMGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP T+T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  ESY +M++ L++GD + Q+++L  L + QYK
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPESYLKMLLHLRVGDFMGQRDILIRLSELQYK 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGTFRV G+ I+IFP+  +  A RV +F ++IE +S F PLTG  I+ +  I 
Sbjct: 184 RNDIALDRGTFRVRGEVIDIFPADSDKNAIRVELFDDEIERLSLFDPLTGHIIKRIARIS 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYVTPR  +  A + IK EL+ R  +L    +L+EAQR+ +R+ YDLEM+   G 
Sbjct: 244 VYPKSHYVTPREKIIAATEEIKVELRERKQQLLDNNKLIEAQRISERVQYDLEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GE PPTL +Y+P+D LL +DESHVT+PQI  MY+GD  RK+ L 
Sbjct: 304 CSGIENYSRYLSGRATGEGPPTLLDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKSNLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP  +E+++C G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEDLMPQTIFVSATPSQYEIDKCDGEIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R   TQV+D+  EI    +   R+L+T LTKRM+EDL+EYL E  I+VRY+HS++ T
Sbjct: 424 VEVRPVGTQVDDLLSEIGKRIKVDERVLVTTLTKRMSEDLSEYLDEHGIKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQT+GRA
Sbjct: 484 VERVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTMGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----- 733
           ARN+N KVILYAD ITKS+  A+ ET RRR+ Q ++N  + I P+ V +KI +V+     
Sbjct: 544 ARNINGKVILYADRITKSMAAAMGETDRRRKMQHQYNLDNGITPKGVVKKITDVMDVGER 603

Query: 734 DPILLEDAATTNISID-AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           D  +L D ++ N++ + A+ +          + +L KQMH  A NL FE+AA +RD++ +
Sbjct: 604 DKGILGDYSSLNVAQNRAKYVVQDAASLSHQIDALEKQMHEHAKNLEFEQAAAVRDQVLK 663

Query: 793 LKSSPY 798
           L+ +  
Sbjct: 664 LRDAFI 669


>gi|168185651|ref|ZP_02620286.1| excinuclease ABC, B subunit [Clostridium botulinum C str. Eklund]
 gi|169296510|gb|EDS78643.1| excinuclease ABC, B subunit [Clostridium botulinum C str. Eklund]
          Length = 657

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/660 (53%), Positives = 470/660 (71%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P+GDQP AI  + KGI   EK Q LLGVTGSGKTFTMA +IE +Q+P +
Sbjct: 1   MGKFKIHSSYKPTGDQPKAIKSISKGILKAEKFQTLLGVTGSGKTFTMANIIEEVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF+ FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID+
Sbjct: 61  VLAHNKTLAAQLTSEFREFFPDNCVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ERND IVV+SVSCIYG+G+ E Y ++ V L+ G   ++ E++  LV  QY
Sbjct: 121 LRHSATSALFERNDVIVVASVSCIYGLGNPEEYKKLTVSLREGMEKDRDEIMRQLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R +I  +RGTFR  GD ++IFP+   ++  RV  FG++I++I EF  LTG  I   +  
Sbjct: 181 ERNEINFVRGTFRARGDVLDIFPASSTNIGIRVEFFGDEIDKIREFDVLTGNIINTRKHA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+ T +  L  A+K I+EEL+ R+  L  E +LLEAQR+ QR  +D+EM+   G
Sbjct: 241 LIFPASHFATSKDKLEIAIKKIEEELEDRVEVLTAEDKLLEAQRIRQRTNFDIEMMREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L GR PG PP TL +Y P+D LLF+DESHVT+PQ+  MY GD  RK  L
Sbjct: 301 YCSGIENYSRVLDGREPGTPPKTLMDYFPDDFLLFIDESHVTLPQVKAMYGGDRSRKNNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP   DNRPL+F+E+      T+ VSATP  +ELE     + EQIIRPTGL+DP
Sbjct: 361 VEYGFRLPCAYDNRPLKFDEFEGKLNETVFVSATPAQYELEHSTN-VAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R  + Q++D+Y  I     +G R+L+T LTK+M+EDLT+YL    I+  Y+HS + 
Sbjct: 420 EIIVRPIKGQIDDLYSSIKETIYKGFRVLVTTLTKKMSEDLTDYLKGMGIKTEYLHSSID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T++R+EIIRDLR G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSL+QTIGR
Sbjct: 480 TIKRMEIIRDLRKGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLVQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+YAD ITK++  AI ET RRR+ Q+E+N+KH I P++V + I +VI   +
Sbjct: 540 AARNSESKVIMYADNITKAMDKAISETNRRRKIQMEYNEKHGIIPKTVLKDIRDVIQTRV 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            E+     +  +  +  LSKK+ +  +    K+M +AA  L FE+AA++RDEI +LK   
Sbjct: 600 AEEEEEYKVKNNTDK--LSKKEIEKLISKYEKEMKVAAKELQFEKAAQLRDEILKLKEQL 657


>gi|324018557|gb|EGB87776.1| excinuclease ABC subunit B [Escherichia coli MS 117-3]
          Length = 673

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 478/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + ++PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFNPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|332359692|gb|EGJ37509.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK355]
          Length = 662

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN+  ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINVRVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SLSK++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLSKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|212703191|ref|ZP_03311319.1| hypothetical protein DESPIG_01233 [Desulfovibrio piger ATCC 29098]
 gi|212673457|gb|EEB33940.1| hypothetical protein DESPIG_01233 [Desulfovibrio piger ATCC 29098]
          Length = 674

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/666 (53%), Positives = 467/666 (70%), Gaps = 6/666 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++ + Y P+GDQP AI  L+  + +    Q+LLGVTGSGKTFTM  VI    RPA+V
Sbjct: 5   SPFKLHSAYVPTGDQPEAIDSLVANLEAGVPEQILLGVTGSGKTFTMVNVIARCGRPALV 64

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ ID++
Sbjct: 65  LAPNKTLAAQLYNEFREFFPQNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKL 124

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R D I+V+SVSCIYG+GS E Y++MI+ +++G  +    L++ LV+ QY+
Sbjct: 125 RHAATHALLTRRDVIIVASVSCIYGLGSPEFYARMIIPVEVGQHMSMDALITRLVEVQYE 184

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD +EI P++  + A R+  FG+DI+ + E  PLTG  +  V    
Sbjct: 185 RNDYDFHRGTFRVRGDVLEIIPAYHHERALRIEFFGDDIDSMREVDPLTGDVLAEVGKTV 244

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SH+V+ +  L      I++EL  RL   +  GRL+EAQRLEQR   DLEM+E  G 
Sbjct: 245 IYPASHFVSAQDNLKRTTADIRQELLERLTAFKASGRLVEAQRLEQRTQLDLEMIEELGY 304

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L GR  GEPP  L  Y PED +LFVDESH+T+PQ+ GM++GD  RK TL 
Sbjct: 305 CNGIENYSRHLDGRKAGEPPSCLLNYFPEDFILFVDESHITVPQVGGMFKGDRSRKQTLV 364

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL+F+E+  L    + VSATPG +E++Q QGII EQIIRPTGLVDP 
Sbjct: 365 DYGFRLPSALDNRPLQFDEFRSLLHQVVYVSATPGKYEMDQSQGIISEQIIRPTGLVDPE 424

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R  + Q+ED+  E     ++G R+L+T LTKRMAEDLTEY     +  RY+HS++ T
Sbjct: 425 VEVRPTKGQMEDLLGECRERIRRGERVLVTTLTKRMAEDLTEYCCNMGVNARYLHSDIDT 484

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER++IIR LR G+FDVLVGINLLREGLDIPE  LV ILDADKEGFLRS  SLIQT GRA
Sbjct: 485 LERLQIIRALRQGEFDVLVGINLLREGLDIPEVSLVCILDADKEGFLRSTGSLIQTFGRA 544

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV+  VILYADT+T S++ A+DET RRR KQ  +N +H I P+S ++ +   +D + +
Sbjct: 545 ARNVHGHVILYADTVTASMRAAMDETERRRAKQTAYNTEHGITPRSTRKSLESPLDALYV 604

Query: 739 EDAATT------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           + ++++        S     + L+ +   A ++ L K+M  AA  L FE AA +RD I+ 
Sbjct: 605 DTSSSSRGKGKGRASRQDDAVPLTAEDTAALVQRLEKEMREAARELEFERAAALRDRIRA 664

Query: 793 LKSSPY 798
           L+    
Sbjct: 665 LRERLI 670


>gi|82776151|ref|YP_402498.1| excinuclease ABC subunit B [Shigella dysenteriae Sd197]
 gi|309786573|ref|ZP_07681196.1| excinuclease ABC, B subunit [Shigella dysenteriae 1617]
 gi|90111051|sp|Q32I48|UVRB_SHIDS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|81240299|gb|ABB61009.1| excision nuclease subunit B [Shigella dysenteriae Sd197]
 gi|308925636|gb|EFP71120.1| excinuclease ABC, B subunit [Shigella dysenteriae 1617]
          Length = 673

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 476/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K     +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALLQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|16804527|ref|NP_466012.1| excinuclease ABC subunit B [Listeria monocytogenes EGD-e]
 gi|47096081|ref|ZP_00233682.1| excinuclease ABC, B subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|116873853|ref|YP_850634.1| excinuclease ABC subunit B [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|224499846|ref|ZP_03668195.1| excinuclease ABC subunit B [Listeria monocytogenes Finland 1988]
 gi|224503270|ref|ZP_03671577.1| excinuclease ABC subunit B [Listeria monocytogenes FSL R2-561]
 gi|254828064|ref|ZP_05232751.1| uvrB [Listeria monocytogenes FSL N3-165]
 gi|254831088|ref|ZP_05235743.1| excinuclease ABC subunit B [Listeria monocytogenes 10403S]
 gi|254900373|ref|ZP_05260297.1| excinuclease ABC subunit B [Listeria monocytogenes J0161]
 gi|254913388|ref|ZP_05263400.1| UvrABC system protein B [Listeria monocytogenes J2818]
 gi|254937769|ref|ZP_05269466.1| uvrB [Listeria monocytogenes F6900]
 gi|284802927|ref|YP_003414792.1| excinuclease ABC subunit B [Listeria monocytogenes 08-5578]
 gi|284996068|ref|YP_003417836.1| excinuclease ABC subunit B [Listeria monocytogenes 08-5923]
 gi|21542281|sp|Q8Y4F5|UVRB_LISMO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|16411977|emb|CAD00567.1| excinuclease ABC (subunit B) [Listeria monocytogenes EGD-e]
 gi|47015542|gb|EAL06474.1| excinuclease ABC, B subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|116742731|emb|CAK21855.1| excinuclease ABC subunit B [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|258600448|gb|EEW13773.1| uvrB [Listeria monocytogenes FSL N3-165]
 gi|258610372|gb|EEW22980.1| uvrB [Listeria monocytogenes F6900]
 gi|284058489|gb|ADB69430.1| excinuclease ABC subunit B [Listeria monocytogenes 08-5578]
 gi|284061535|gb|ADB72474.1| excinuclease ABC subunit B [Listeria monocytogenes 08-5923]
 gi|293591394|gb|EFF99728.1| UvrABC system protein B [Listeria monocytogenes J2818]
          Length = 658

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/656 (53%), Positives = 468/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI QL+ G+    K Q LLG TG+GKTFT++ VI+ + +P +VMA
Sbjct: 5   FELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS   Y +M+V L++G  + + +LL  LV  QY R 
Sbjct: 125 SATAALFERRDVIIIASVSCIYGLGSPIEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++   R+  FG++IE I E   LTG+ I   E + I+
Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGEREHVSIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  IK EL+ RL  L  + +LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 245 PASHFVTRPDIMKKAIVNIKAELEDRLKVLRADNKLLEAQRLEQRTNYDLEMMEEMGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y P+D  + +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQIRGMFNGDQARKQMLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + +SATPG +ELE+    ++EQIIRPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEK-NPDVIEQIIRPTGLLDPIVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+ DEIN   ++  R+L+T LTK+M+EDLT YL E  ++V+Y+HSEVKTLE
Sbjct: 424 IRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG +DV+VGINLLREG+D+PE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P+++K++I  +I      D
Sbjct: 544 NENGRVIMYADKMTDSMRNSIGETERRRKIQIEYNEKHGITPKTIKKEIRGIIAATSAAD 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                   D  +  +SKK+    ++ +  +M  AA  L+FE AA +RD +  +K+ 
Sbjct: 604 EREAVKQHDLSK--MSKKERDVFIEGMEHEMKEAAKALDFERAAELRDALLEIKAE 657


>gi|308175247|ref|YP_003921952.1| excinuclease ABC subunit B [Bacillus amyloliquefaciens DSM 7]
 gi|307608111|emb|CBI44482.1| excinuclease ABC (subunit B) [Bacillus amyloliquefaciens DSM 7]
 gi|328555219|gb|AEB25711.1| excinuclease ABC subunit B [Bacillus amyloliquefaciens TA208]
 gi|328913580|gb|AEB65176.1| excinuclease ABC (subunit B) [Bacillus amyloliquefaciens LL3]
          Length = 661

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/657 (54%), Positives = 470/657 (71%), Gaps = 2/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L+KGI    K Q LLG TG+GKTFT++ +I+ + +P +V+A
Sbjct: 5   FELVSKYQPQGDQPQAIEKLVKGIQEGRKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y +M+V L+    +E+ ELL  LV  QY R 
Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYREMVVSLRPEMEIERNELLRKLVDIQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ + + + + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I++EL+ RL  + + G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTRAEKMEKAILNIEQELEERLKVMRENGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PG  P TL +Y P+D ++ VDESHVTIPQ+ GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       + VSATPG +E+E    +I EQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTPEMI-EQIIRPTGLLDPLID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLE 739
           N   +VI+YAD IT S+++AI+ET RRRE+Q   N+ H I PQ++ ++I +VI      E
Sbjct: 544 NAEGRVIMYADKITHSMEIAINETKRRREQQERFNEIHGITPQTINKEIRDVIRATQAAE 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D          +   ++KK+ +  ++ +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 DKEEYKTKAAPKLAKMTKKERQKVVEQMEHEMKEAARALDFERAAELRDLLLELKAE 660


>gi|300715922|ref|YP_003740725.1| UvrABC system protein B [Erwinia billingiae Eb661]
 gi|299061758|emb|CAX58874.1| UvrABC system protein B [Erwinia billingiae Eb661]
          Length = 673

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/665 (55%), Positives = 467/665 (70%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +++ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V
Sbjct: 3   KVFKLNSEFKPAGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMVIDQRSILRRLSELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D A RV +F  ++E +S F PLTGQ    V    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSIFDPLTGQVTSVVPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK EL  R   L    +LLE QR+ QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILQAMEEIKVELADRRKVLLNNNKLLEEQRISQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+ R PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL 
Sbjct: 303 CSGIENYSRYLSARGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP++FEE+  L P TI VSATPG +ELE+  G +++Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGKYELEKSGGEVIDQVVRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI        R+L+TVLTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVSTQVDDLLSEIRKRVAINERVLVTVLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN+N K ILY D IT S++ AI ET RRR KQ  +N ++ I PQ + +KI ++++    
Sbjct: 543 ARNLNGKAILYGDKITPSMERAIGETERRRAKQEIYNAENGIVPQGLNKKIADILELGQG 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      A   +  DA  L LS K  +  +  L  QM   A NL FEEAA IRD++
Sbjct: 603 LAKNKSRGRAKAGRIVEDDAPYLDLSPKGLQKKIHQLEAQMQEHAQNLEFEEAANIRDQL 662

Query: 791 KRLKS 795
            +++ 
Sbjct: 663 HKVRE 667


>gi|126727445|ref|ZP_01743279.1| excinuclease ABC subunit B [Rhodobacterales bacterium HTCC2150]
 gi|126703225|gb|EBA02324.1| excinuclease ABC subunit B [Rhodobacterales bacterium HTCC2150]
          Length = 727

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/662 (64%), Positives = 526/662 (79%), Gaps = 1/662 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
              +    F + T + P+GDQP AIA+L +GI   E+ Q+LLG TG+GKTFTMAK+IE  
Sbjct: 17  EKLEGGRKFVLHTPFEPAGDQPTAIAELKEGILDGERNQVLLGATGTGKTFTMAKLIEET 76

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRPAI++APNK LAAQLY EFK FFP NAVEYFVS+YDYYQPEAYV R+DTYIEKES IN
Sbjct: 77  QRPAIILAPNKTLAAQLYGEFKGFFPENAVEYFVSFYDYYQPEAYVARSDTYIEKESQIN 136

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           EQIDRMRHSATRSLLER+D I+V+SVSCIYGIGSVE+Y  M + L  G S +Q++++  L
Sbjct: 137 EQIDRMRHSATRSLLERDDVIIVASVSCIYGIGSVETYGAMTLDLVAGKSYKQRDVIMDL 196

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V QQYKR D    RGTFRV GDS+EIFP+HLED AW++S FG+++E I+EF PLTGQK  
Sbjct: 197 VAQQYKRNDAAFARGTFRVRGDSLEIFPAHLEDRAWKLSFFGDELETITEFDPLTGQKTG 256

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            +E I++YANSHYVTP+PTL  A+  IKEEL++RL ++E +G+LLEAQRLEQR  +DLEM
Sbjct: 257 TMEQIRVYANSHYVTPKPTLRQAIVSIKEELRLRLAQMEADGKLLEAQRLEQRTHFDLEM 316

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           LE  G C  IENYSRYLTGR PGEPPPTLFE+IP+ +++F DESHV++PQI GMY+GD+ 
Sbjct: 317 LEAQGFCNGIENYSRYLTGRAPGEPPPTLFEFIPDHAIVFADESHVSVPQIGGMYKGDYR 376

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP T+ VSATP +WELEQ  G+  EQIIRPT
Sbjct: 377 RKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQTVFVSATPQNWELEQSGGVFAEQIIRPT 436

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP +EIR   TQV+D+ DE+   A+QGLR L+T LTKRMAEDLTEY++E+  RVRYM
Sbjct: 437 GLLDPVIEIRPVGTQVDDLLDEVGKMAEQGLRTLVTTLTKRMAEDLTEYMHEQGTRVRYM 496

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++ TLERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSL+
Sbjct: 497 HSDIDTLERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLV 556

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN   +VI+YAD IT S++ A+ ET RRREKQ  +N +H I P +VK+ + +V
Sbjct: 557 QTIGRAARNAGGRVIMYADRITGSMERAMGETERRREKQNAYNIEHGITPATVKKNVEDV 616

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           +  +   D   + ++    + ++      A L+ LR  M  AA+NL FEEAAR+RDE+KR
Sbjct: 617 LAGLYNGDTDQSRVTTKVDKPAM-GANLAAVLEGLRTDMRKAAENLEFEEAARLRDEVKR 675

Query: 793 LK 794
           L+
Sbjct: 676 LE 677


>gi|323967375|gb|EGB62796.1| excinuclease ABC [Escherichia coli M863]
 gi|327253561|gb|EGE65190.1| excinuclease ABC, B subunit [Escherichia coli STEC_7v]
          Length = 673

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 476/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|56414100|ref|YP_151175.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197363022|ref|YP_002142659.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81821420|sp|Q5PG52|UVRB_SALPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238689931|sp|B5BC27|UVRB_SALPK RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56128357|gb|AAV77863.1| excision nuclease ABC subunit B [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094499|emb|CAR60018.1| excision nuclease ABC subunit B [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 673

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/665 (56%), Positives = 475/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----- 733
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 734 ---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                   +    +       +L ++ K  +  +  L  QM   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|227884259|ref|ZP_04002064.1| excinuclease ABC subunit B [Escherichia coli 83972]
 gi|300993254|ref|ZP_07180301.1| excinuclease ABC subunit B [Escherichia coli MS 45-1]
 gi|301051303|ref|ZP_07198129.1| excinuclease ABC subunit B [Escherichia coli MS 185-1]
 gi|227839011|gb|EEJ49477.1| excinuclease ABC subunit B [Escherichia coli 83972]
 gi|300297062|gb|EFJ53447.1| excinuclease ABC subunit B [Escherichia coli MS 185-1]
 gi|300406662|gb|EFJ90200.1| excinuclease ABC subunit B [Escherichia coli MS 45-1]
 gi|307552624|gb|ADN45399.1| UvrABC system protein B [Escherichia coli ABU 83972]
 gi|315292637|gb|EFU51989.1| excinuclease ABC subunit B [Escherichia coli MS 153-1]
          Length = 673

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/665 (55%), Positives = 477/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +L+E QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLMEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|227529561|ref|ZP_03959610.1| excision endonuclease subunit UvrB [Lactobacillus vaginalis ATCC
           49540]
 gi|227350520|gb|EEJ40811.1| excision endonuclease subunit UvrB [Lactobacillus vaginalis ATCC
           49540]
          Length = 682

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/664 (52%), Positives = 468/664 (70%), Gaps = 5/664 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI +L  GI   EK Q+LLG TG+GKTFT++ VI  + +P ++++
Sbjct: 10  FELVSDYKPTGDQPEAIKELTTGIEKGEKAQILLGATGTGKTFTISNVIAKVNKPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID +RH
Sbjct: 70  HNKTLAGQLYSEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDELRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ER+D IVV+SVS I+G+G    Y   +V L++G  +E+  LL  LV  Q++R 
Sbjct: 130 SATSSLMERDDVIVVASVSSIFGLGDPSEYHNHVVSLRVGQEIERDRLLRELVNIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ED A R+  FG++I+ I E   LTG+ I + E I I+
Sbjct: 190 DIDFQRGRFRVHGDVVEVFPASREDKALRIEFFGDEIDRIREVDALTGEVIGDREHISIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +   EG+LLEA+R++QR TYD+EML   G C 
Sbjct: 250 PATHFLTSEEIMDRALPQIENDMKKQVKKFTDEGKLLEAERIQQRTTYDIEMLREMGYCN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+ GR PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRYMDGRKPGEPPYTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + +SATPG +E+ Q    +V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLAEFEKHVNQVVYMSATPGPYEMAQT-DHVVQQIIRPTGLLDPTIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+M+EDLT+YL +  ++V+Y+HS++KTLE
Sbjct: 429 VRPVMGQIDDLVGEINKRIEKHERVFVTTLTKKMSEDLTDYLKDLGLKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADT+T S+Q AIDET RRRE Q+ +N+KH I P+++ + I E I      +
Sbjct: 549 NANGSVIMYADTVTDSMQKAIDETKRRREIQIAYNRKHGITPKTIIKPIQETISSTTKTE 608

Query: 741 ----AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                A +          L++      ++ L +QM  AA  L+FE+AA +RD I  LK+ 
Sbjct: 609 DIGKEADSTEFTTKDFAKLNRDDQTKMVEELTEQMRTAAKRLDFEQAATLRDTIMELKAQ 668

Query: 797 PYFQ 800
              +
Sbjct: 669 MTGK 672


>gi|254419582|ref|ZP_05033306.1| excinuclease ABC, B subunit [Brevundimonas sp. BAL3]
 gi|196185759|gb|EDX80735.1| excinuclease ABC, B subunit [Brevundimonas sp. BAL3]
          Length = 780

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 436/684 (63%), Positives = 528/684 (77%), Gaps = 8/684 (1%)

Query: 117 LKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGV 176
           +     W PHR             F+++T Y P+GDQPAAIA+L+    + ++ Q+LLGV
Sbjct: 56  VAAPADWVPHRPSHEGKKKGG--RFRLETQYTPAGDQPAAIAELVAQAEAGDRDQVLLGV 113

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           TGSGKTFTMAKVIE  QRPA+++APNK LAAQLYSEFK+FFP NAVEYFVSYYDYYQPEA
Sbjct: 114 TGSGKTFTMAKVIEQTQRPALILAPNKTLAAQLYSEFKSFFPDNAVEYFVSYYDYYQPEA 173

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           YVPRTDTYIEK+SSINEQIDRMRHSATR++LER D IVV+SVSCIYGIGSVE+Y+ M   
Sbjct: 174 YVPRTDTYIEKDSSINEQIDRMRHSATRAILEREDVIVVASVSCIYGIGSVETYTAMTFT 233

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK+GD +++ +L + L+  QYKR D+   RG FR  GD IEIFP HLED AWR+S+FG++
Sbjct: 234 LKVGDQIDEAKLRADLIALQYKRNDLNFDRGMFRKRGDVIEIFPVHLEDRAWRISLFGDE 293

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           +E I EF PLTG+K  ++  I +YA SHYVTPRPTLN A + IK ELK  L  + + G+L
Sbjct: 294 LEAIQEFDPLTGKKTADLTEITVYAASHYVTPRPTLNQATQGIKAELKETLDWMIENGKL 353

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           LEAQRLEQR  +DLEM+E TGSC  IENYSR+LTGR PGEPPPT FEYIP+++LLFVDES
Sbjct: 354 LEAQRLEQRTRFDLEMMEATGSCAGIENYSRWLTGRAPGEPPPTFFEYIPDNALLFVDES 413

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536
           HVTI QI+GM+RGD+ RK+TLAEYGFRLPSC+DNRPL+FEEW  +RP T+ VSATPG+WE
Sbjct: 414 HVTIGQINGMFRGDYRRKSTLAEYGFRLPSCIDNRPLKFEEWEAMRPQTVHVSATPGAWE 473

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSA----RTQVEDVYDEINLAAQQGLRILLTVLTK 592
           ++Q  G+ VEQ+IRPTGL+DPPVEIR      R QV+DV DE+    + G R L+T LTK
Sbjct: 474 MDQAGGVFVEQVIRPTGLIDPPVEIRPVSGQTRNQVDDVIDEVKATTRAGYRSLVTTLTK 533

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           +MAEDLTEY++E+ IRVRYMHS+V TLERIEI+RDLRLG FD L+GINLLREGLDIPECG
Sbjct: 534 KMAEDLTEYMHEQGIRVRYMHSDVDTLERIEILRDLRLGSFDCLIGINLLREGLDIPECG 593

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           LVAILDADKEGFLRS+TSLIQTIGRAARN++ +VILYAD +T S++ AI ET RRRE+Q+
Sbjct: 594 LVAILDADKEGFLRSETSLIQTIGRAARNIDGRVILYADRMTGSMERAIAETDRRRERQM 653

Query: 713 EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS--KKKGKAHLKSLRKQ 770
            +N +H I P+SVK  I E++D                 + S        +A LK L  +
Sbjct: 654 AYNTEHGITPESVKRDIKELMDSPYESREMDRLTRPGVAEASKPFVGSNFQAALKDLEGR 713

Query: 771 MHLAADNLNFEEAARIRDEIKRLK 794
           M  AA NL FEEA R+RDEIKR+K
Sbjct: 714 MREAASNLEFEEAGRLRDEIKRMK 737


>gi|171057735|ref|YP_001790084.1| excinuclease ABC subunit B [Leptothrix cholodnii SP-6]
 gi|170775180|gb|ACB33319.1| excinuclease ABC, B subunit [Leptothrix cholodnii SP-6]
          Length = 703

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/685 (54%), Positives = 493/685 (71%), Gaps = 4/685 (0%)

Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183
            P  + +    S + + FQ+   Y P+GDQP AI  L+ GI      Q LLGVTGSGKTF
Sbjct: 10  EPAAATAGQFVSYEGSPFQLFQPYPPAGDQPTAIEGLVSGIQDGLTYQTLLGVTGSGKTF 69

Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243
           TMA VI  M RPAI+ APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAY+P+ D 
Sbjct: 70  TMANVIARMGRPAIIFAPNKTLAAQLYAEFREFFPKNAVEYFVSYYDYYQPEAYMPQRDL 129

Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303
           +IEK+SSINE I++MR SAT+S+LER D I+V++VS IYGIG  E Y+QM   +++GD++
Sbjct: 130 FIEKDSSINEHIEQMRLSATKSVLERRDTIIVATVSAIYGIGKPEDYTQMRFIVRVGDTI 189

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            Q+++++ L++ QY R D    RGTFRV GD+I+IFP+   ++A R+ +F +++E +  F
Sbjct: 190 GQRDVIAQLIRMQYTRNDTEFARGTFRVRGDTIDIFPAEHSELAIRLELFDDEVESLQLF 249

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
            PLTG+  + V    +Y +SHYVTPR  +  A++ IK EL+ RL E   +G+L+EAQR+E
Sbjct: 250 DPLTGRVRQKVPRFTVYPSSHYVTPRERVLAAIEGIKLELRERLAEFVADGKLVEAQRVE 309

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
           QR  +DLEML+  G C+ IENYSR+L+G  PGEPP TL +Y+P D+L+F+DESHV I Q+
Sbjct: 310 QRTRFDLEMLQEVGHCKGIENYSRHLSGAAPGEPPSTLVDYLPSDALMFLDESHVLIGQL 369

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
            GMY GD  RK TL  YGFRLPS MDNRPLRFEE+       + VSATP  +E +   G 
Sbjct: 370 GGMYNGDRARKTTLVAYGFRLPSAMDNRPLRFEEFERKMRQVVFVSATPADYEKQHA-GQ 428

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
           +VEQ++RPTGLVDP +E+R A +QV+DV  EI L      R+L+T LTKRMAE LT+Y+ 
Sbjct: 429 VVEQLVRPTGLVDPLIEVRPAGSQVDDVLQEIRLRVAINERVLITTLTKRMAEQLTDYMA 488

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           E  ++VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEG
Sbjct: 489 ENGVKVRYLHSDIDTVERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEG 548

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           FLR++ SLIQTIGRAARNVN K ILYAD +T+S++ AI ET RRR +Q+EHN  H I P+
Sbjct: 549 FLRAERSLIQTIGRAARNVNGKAILYADKMTESMRKAIGETERRRARQVEHNTLHGITPR 608

Query: 724 SVKEKIMEVIDPILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
            +++ + E+ID +  E +   +++I    A+  +LS+K     +K L KQM   A NL F
Sbjct: 609 GIRKHVKELIDGVYGEKSGKDDLAIMHSVAEVEALSEKDLGKRIKQLEKQMLEHARNLEF 668

Query: 781 EEAARIRDEIKRLKSSPYFQGLDDS 805
           E+AARIRD++ +L+   +     D+
Sbjct: 669 EKAARIRDQLAQLREQAFGAAGSDN 693


>gi|67640579|ref|ZP_00439380.1| excinuclease ABC, B subunit [Burkholderia mallei GB8 horse 4]
 gi|134283066|ref|ZP_01769768.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 305]
 gi|217424494|ref|ZP_03455992.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 576]
 gi|134245714|gb|EBA45806.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 305]
 gi|217392418|gb|EEC32442.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 576]
 gi|238521326|gb|EEP84778.1| excinuclease ABC, B subunit [Burkholderia mallei GB8 horse 4]
          Length = 679

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/671 (54%), Positives = 482/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y PSGDQP AIA L++G+      Q LLGVTGSGKT+TMA  I  + RPA
Sbjct: 4   EGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANTIARLGRPA 63

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 64  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 123

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+++ L+  Q
Sbjct: 124 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREVIARLIAMQ 183

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG+  + +  
Sbjct: 184 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTGRVRQKIPR 243

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +DLEML+  
Sbjct: 244 FTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRFDLEMLQEL 303

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 304 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 363

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL+F E+       + VSATP  +E     G   EQ++RPTGLVD
Sbjct: 364 LVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYEQRVS-GQTAEQVVRPTGLVD 422

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 423 PQIEVRPASTQVDDVLSEITERVKANERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 482

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 483 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 542

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N+K  I P+ V ++I ++ID +
Sbjct: 543 RAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGV 602

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA+ RD++  L
Sbjct: 603 YNADEARAELKEAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAQTRDQLALL 662

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 663 RERVFGANVGD 673


>gi|255021827|ref|ZP_05293837.1| Excinuclease ABC subunit B [Acidithiobacillus caldus ATCC 51756]
 gi|254968651|gb|EET26203.1| Excinuclease ABC subunit B [Acidithiobacillus caldus ATCC 51756]
          Length = 676

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/665 (55%), Positives = 487/665 (73%), Gaps = 7/665 (1%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           +++ + P GDQP AIA+L+ G+ S E  Q LLGVTGSGKTFTMA VI   QRPAIVMAPN
Sbjct: 7   LESVFPPCGDQPVAIAELVDGLASGESFQTLLGVTGSGKTFTMANVIARTQRPAIVMAPN 66

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY+E + FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR SA
Sbjct: 67  KTLAAQLYAELRAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRLSA 126

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           T++LLER D ++V++VS IYG+G   +Y  MI+ L+ GD+++Q+ +L  L   QY R  +
Sbjct: 127 TKALLERPDVVIVATVSAIYGLGDPAAYHNMILHLREGDAMDQRAILRRLADMQYSRNPM 186

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
            + R TFRV GD I+I+P+  ED A RV +FG++IE IS F PLTG+ I  +    +Y  
Sbjct: 187 ELKRSTFRVNGDVIDIWPAESEDEAVRVELFGDEIERISLFDPLTGKTITRLPRYTVYPK 246

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPR  +  A++ IK+EL+ RL  L +E +L+EAQRLEQR  +DLEM+   G C  I
Sbjct: 247 SHYVTPREQILAAIEQIKDELRERLDVLRRENKLVEAQRLEQRTRFDLEMMAELGYCSGI 306

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYL+GR PGEPPPTL +Y+P ++LLF+DESHVT+PQI GMY+GD  RK TL EYGF
Sbjct: 307 ENYSRYLSGRAPGEPPPTLMDYLPANALLFIDESHVTVPQIGGMYKGDRSRKETLVEYGF 366

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPS +DNRPL F E+  L P TI +SATPG +EL +  G +VEQ++RPTGLVDP VE+R
Sbjct: 367 RLPSALDNRPLMFPEFEALMPQTIFISATPGPYELSRS-GRVVEQVVRPTGLVDPEVEVR 425

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A+ QV+D+  EI+     G R+L+T LTKRMAEDL++YL+E  I+ RY+HS+++T+ER+
Sbjct: 426 PAKGQVDDLVSEIHAVIASGWRVLVTTLTKRMAEDLSDYLHELGIQCRYLHSDIETVERV 485

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLR G FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAARN+
Sbjct: 486 EIIRDLRAGVFDVLIGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAARNL 545

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + + ILYADTIT S+  A++ET RRR KQ+  N +H I P+ + + + ++++ +   + +
Sbjct: 546 HGRAILYADTITGSMARAMEETERRRNKQIRFNAEHGITPKGIVKPVADILEGVYRRNGS 605

Query: 743 TTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
                      +       +     ++ L + MH  A NL FE+AA +RD+I+ L++   
Sbjct: 606 GARTKAAEPTPTYADVKDPRALAKRIRELEETMHRHARNLEFEQAAALRDQIRILEAEIL 665

Query: 799 FQGLD 803
             GLD
Sbjct: 666 --GLD 668


>gi|169830504|ref|YP_001716486.1| excinuclease ABC subunit B [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637348|gb|ACA58854.1| excinuclease ABC, B subunit [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 674

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/665 (53%), Positives = 466/665 (70%), Gaps = 3/665 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +DY P GDQP AI  L++G+    + Q+LLGVTGSGKT+TMA+VI  +QRP +
Sbjct: 1   MPPFKLVSDYVPRGDQPQAIENLVRGLERGLRHQVLLGVTGSGKTYTMAQVISRVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQL +EFK FFP NAVEYFVSYYDYYQPEAY+P +D YIEK++SINE+ID+
Sbjct: 61  VIAPNKTLAAQLCAEFKEFFPENAVEYFVSYYDYYQPEAYLPSSDMYIEKDASINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT SL ER D I+V+SVSCIYG+G  E Y  ++V L+     ++  +L  LV  QY
Sbjct: 121 LRHSATSSLFERRDVIIVASVSCIYGLGDPEEYRNLVVSLRRNGGYDRDAVLRKLVSIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RG FRV GD +E+FP+   + A R+  FG+++E I EF  LTG+ +   + +
Sbjct: 181 ERNDINFGRGRFRVRGDVLEVFPAASGERALRIEFFGDEVERILEFDALTGEVLGERQHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I   SHY T +  L+ A+  I+ EL  RL EL    +LLEAQRLEQR  YDLEML   G
Sbjct: 241 SILPASHYATSKDRLDRAVTAIETELTERLAELRAANKLLEAQRLEQRTNYDLEMLRELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSR+LTGR PG PP TL +Y P+D L+ VDESH+TIPQI GMY GD  RK  L
Sbjct: 301 YCKGIENYSRHLTGREPGAPPFTLLDYFPDDLLIIVDESHITIPQIGGMYEGDRSRKVAL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL F E+       + VSATPG WEL+     +VEQI+RPTGLVDP
Sbjct: 361 VEHGFRLPSAFDNRPLTFSEFMARVRQGVYVSATPGPWELKHSAA-VVEQIVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R  R Q++D+  EI     +  R+L+T LTKRMAEDL +Y  E  ++VRY+HSE+ 
Sbjct: 420 EMVVRPTRGQIDDLLGEIRQRVARNERVLVTTLTKRMAEDLCDYFRELGLKVRYLHSEIN 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+EI+RDLRLG FDVLVGINLLREGLD+PE  LVA+LDADKEG+LRS+ SLIQT GR
Sbjct: 480 TLERMEILRDLRLGTFDVLVGINLLREGLDLPEVSLVAVLDADKEGYLRSERSLIQTAGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N KVILYAD IT S++ A+DET RRRE+Q+  N+ H I PQ+V++ +  VI+   
Sbjct: 540 AARNLNGKVILYADQITGSMRRALDETERRRERQMAFNRAHGITPQTVQKAVRSVIEATR 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             +      ++  ++  L++ + K  +  L K M  AA +L FE AA++RD +  L+   
Sbjct: 600 AAETQAPYYAVSEKR--LTRSELKKLIARLEKDMRYAARHLEFERAAQLRDALIELRLQL 657

Query: 798 YFQGL 802
             +G+
Sbjct: 658 QPKGV 662


>gi|204929975|ref|ZP_03220996.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204320969|gb|EDZ06170.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 673

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 475/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----- 733
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 734 ---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                   +    +       +L ++ K  +  +  L  QM   A NL FEEAA+IRD++
Sbjct: 603 IVKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|212712173|ref|ZP_03320301.1| hypothetical protein PROVALCAL_03255 [Providencia alcalifaciens DSM
           30120]
 gi|212685220|gb|EEB44748.1| hypothetical protein PROVALCAL_03255 [Providencia alcalifaciens DSM
           30120]
          Length = 672

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/665 (55%), Positives = 471/665 (70%), Gaps = 7/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI    RP ++MA
Sbjct: 5   FKLYSDFQPAGDQPEAIRKLREGLEDGLAHQTLLGVTGSGKTFTIANVIAQENRPTMLMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  HNKTLAAQLYSEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  +SY +M++ L  G  ++Q+ +L  L   QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDSYLKMMLHLTDGMIIDQRSILRRLADLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTG     V    +Y
Sbjct: 185 DQAFTRGTFRVRGEVIDIFPAESDEYALRVELFDEEVERLSLFDPLTGAIQHRVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L +  +LLE QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILEAMENIKVELADRRRVLLENNKLLEEQRITQRTQFDLEMMSELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI  MY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRAPGEPPPTLFDYLPADGLLVVDESHVTIPQIGAMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L P TI VSATPG++EL++    ++EQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGNYELDKSGQEVIEQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI +  Q+  R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRIRVQKQERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILY D IT S+  AI ET RRR KQ+  N+ H I PQ + +K+ +++       
Sbjct: 545 NLNGKAILYGDRITNSMGKAIAETERRRAKQMAFNEAHGIIPQGLNKKVGDILQIGHKVG 604

Query: 741 AATTNISIDAQQL-------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                 S ++ +        S+S K+ +  +  L  QM+  A +L FE AAR+RDE++ L
Sbjct: 605 GKGKGRSKESIKDESALNVQSMSTKELEQRISQLESQMYKHAQDLEFEAAARVRDELQIL 664

Query: 794 KSSPY 798
           ++   
Sbjct: 665 RNQFI 669


>gi|110640983|ref|YP_668711.1| excinuclease ABC subunit B [Escherichia coli 536]
 gi|218688564|ref|YP_002396776.1| excinuclease ABC subunit B [Escherichia coli ED1a]
 gi|300992210|ref|ZP_07179819.1| excinuclease ABC subunit B [Escherichia coli MS 200-1]
 gi|122958476|sp|Q0TJR9|UVRB_ECOL5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|254764907|sp|B7MQN2|UVRB_ECO81 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|110342575|gb|ABG68812.1| excinuclease ABC subunit B [Escherichia coli 536]
 gi|218426128|emb|CAR06948.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Escherichia coli ED1a]
 gi|300305373|gb|EFJ59893.1| excinuclease ABC subunit B [Escherichia coli MS 200-1]
 gi|324011075|gb|EGB80294.1| excinuclease ABC subunit B [Escherichia coli MS 60-1]
          Length = 673

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 476/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
             L+ 
Sbjct: 663 HLLRE 667


>gi|125718171|ref|YP_001035304.1| excinuclease ABC subunit B [Streptococcus sanguinis SK36]
 gi|189038006|sp|A3CNJ9|UVRB_STRSV RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|125498088|gb|ABN44754.1| Helicase subunit of the DNA excision repair complex, subunit B,
           putative [Streptococcus sanguinis SK36]
          Length = 662

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYKPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|163735212|ref|ZP_02142647.1| excinuclease ABC subunit B [Roseobacter litoralis Och 149]
 gi|161391426|gb|EDQ15760.1| excinuclease ABC subunit B [Roseobacter litoralis Och 149]
          Length = 732

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/679 (61%), Positives = 526/679 (77%), Gaps = 6/679 (0%)

Query: 117 LKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGV 176
           L N       R        +    F++ T++ P+GDQP AI +L  G+ + ++ Q+LLG 
Sbjct: 13  LANAAPDVRARP-----KLEGGKAFKLATEFEPAGDQPTAIKELAAGVRNGDRDQVLLGA 67

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           TG+GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP NAVEYFVS+YDYYQPEA
Sbjct: 68  TGTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPENAVEYFVSFYDYYQPEA 127

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           YV R+DTYIEKES INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   
Sbjct: 128 YVARSDTYIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYGAMTQD 187

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK G   +Q+++++ LV QQY+R D    RG+FRV GDS+EIFP+HLED AW++S FG +
Sbjct: 188 LKTGQMYDQRQVMADLVAQQYRRNDQSFQRGSFRVRGDSLEIFPAHLEDRAWKLSFFGEE 247

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           +E I+EF PLTG+K    E I++YANSHYVTP+PT+N A+  IK+EL+ RL +L  +G+L
Sbjct: 248 LEAITEFDPLTGEKTDTFEQIRVYANSHYVTPKPTMNQAIIGIKKELRTRLDQLVGDGKL 307

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           LEAQRLEQR  +DLEMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DES
Sbjct: 308 LEAQRLEQRTNFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADES 367

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536
           HV++PQI GMY+GD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE
Sbjct: 368 HVSVPQIGGMYKGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWE 427

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           +EQ  G+  EQIIRPTGL+DP +EIR    QV+D+ DE+   A  G R L+T LTKRMAE
Sbjct: 428 IEQTGGVFTEQIIRPTGLIDPEIEIRPVEMQVDDLLDEVRKVAADGFRTLVTTLTKRMAE 487

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DLTEY++E+ IRVRYMHS++ TLERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAI
Sbjct: 488 DLTEYMHEQGIRVRYMHSDIDTLERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAI 547

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
           LDADKEGFLRS+TSLIQT GRAARN   +VI+YAD IT S++ AI ET RRR KQ+ +N+
Sbjct: 548 LDADKEGFLRSETSLIQTTGRAARNAEGRVIMYADRITGSMERAIGETDRRRAKQVAYNE 607

Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
           KH I P +VK+ + +++  +   D   + ++    +  ++    +  L  LR  M  AA+
Sbjct: 608 KHGITPTTVKKNVEDILAGLYKGDTDQSRVTAKIDKQ-MAGGNLQTVLDGLRTDMRKAAE 666

Query: 777 NLNFEEAARIRDEIKRLKS 795
           NL FEEAAR+RDE+KRL++
Sbjct: 667 NLEFEEAARLRDEVKRLEA 685


>gi|254282159|ref|ZP_04957127.1| excinuclease ABC, B subunit [gamma proteobacterium NOR51-B]
 gi|219678362|gb|EED34711.1| excinuclease ABC, B subunit [gamma proteobacterium NOR51-B]
          Length = 673

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/668 (55%), Positives = 498/668 (74%), Gaps = 11/668 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++++Y P+GDQP AI +L+ GI+S    Q+LLGVTGSGKTFTMA V++ +QRP IVMA
Sbjct: 5   FEVKSNYQPAGDQPFAIQKLVDGINSGLAEQVLLGVTGSGKTFTMANVVQQLQRPTIVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++ +N+ I++MR 
Sbjct: 65  HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAQVNDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER DC+VVS+VS IYG+G  ESY +M++ L  G+ ++Q+ +L  L + QY R 
Sbjct: 125 SATKALIEREDCLVVSTVSSIYGLGDPESYFKMVMHLSRGEIIDQRGILRQLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGT+RV GD I++FP+  +++A R+ +F  +IE ++ F PLTG  +  +  I I+
Sbjct: 185 DIDFKRGTYRVRGDVIDVFPADSDELAIRIELFDEEIENLTTFDPLTGVIVEKLPRITIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV  R T+  A+  I+EEL+ R+ +L++  +LLEAQR++QR  YD+EM+   G CQ
Sbjct: 245 PKTHYVASRDTMLGAIDLIEEELEGRVKQLKEADKLLEAQRIQQRTRYDIEMIRELGYCQ 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLFEY+P+++L+ VDESHVT+PQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRAPGEPPPTLFEYLPDNALIMVDESHVTVPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW  LRP  I VSATPG++E E+  G  VEQ++RPTGLVDP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEALRPQAIYVSATPGAYETERS-GQTVEQVVRPTGLVDPEVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R ARTQV+D+  EI+     G R+L+T LTKRMAEDLTEYL E +IRVRY+HS++ T+E
Sbjct: 424 VRPARTQVDDLLGEIHTTVAAGSRVLVTTLTKRMAEDLTEYLSEHDIRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII+DLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 484 RVEIIQDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           +++ + ILY D +T S++ AI ET RRR KQ+E N +H I P+ +++ + ++++      
Sbjct: 544 HIDGRAILYGDRMTGSMERAIAETERRRVKQVEFNTEHGITPKGIEKSVQDILEGARRMP 603

Query: 739 --------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      A    +  A+ ++LS K     L+S+  QM   A NL FE+AA++RD++
Sbjct: 604 TKPRSARDRKVAEERAAYTAEVVNLSPKALARKLESMEAQMLEHAKNLEFEQAAQLRDQL 663

Query: 791 KRLKSSPY 798
             +K   +
Sbjct: 664 TEIKQQAF 671


>gi|168240658|ref|ZP_02665590.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449193|ref|YP_002044826.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|238690602|sp|B4TC52|UVRB_SALHS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|194407497|gb|ACF67716.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205339909|gb|EDZ26673.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 673

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/665 (56%), Positives = 475/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS MDNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSAMDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----- 733
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 734 ---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                   +    +       +L ++ K  +  +  L  QM   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|47092775|ref|ZP_00230560.1| excinuclease ABC, B subunit [Listeria monocytogenes str. 4b H7858]
 gi|217963409|ref|YP_002349087.1| excinuclease ABC, B subunit [Listeria monocytogenes HCC23]
 gi|226225037|ref|YP_002759144.1| excinuclease ABC (subunit B) [Listeria monocytogenes Clip81459]
 gi|254825389|ref|ZP_05230390.1| excinuclease ABC [Listeria monocytogenes FSL J1-194]
 gi|254853509|ref|ZP_05242857.1| excinuclease ABC [Listeria monocytogenes FSL R2-503]
 gi|254932270|ref|ZP_05265629.1| excinuclease ABC [Listeria monocytogenes HPB2262]
 gi|255521889|ref|ZP_05389126.1| excinuclease ABC subunit B [Listeria monocytogenes FSL J1-175]
 gi|290892652|ref|ZP_06555644.1| excinuclease ABC [Listeria monocytogenes FSL J2-071]
 gi|300765012|ref|ZP_07075000.1| excinuclease ABC, B subunit [Listeria monocytogenes FSL N1-017]
 gi|47018863|gb|EAL09611.1| excinuclease ABC, B subunit [Listeria monocytogenes str. 4b H7858]
 gi|217332679|gb|ACK38473.1| excinuclease ABC, B subunit [Listeria monocytogenes HCC23]
 gi|225877499|emb|CAS06213.1| excinuclease ABC (subunit B) [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258606881|gb|EEW19489.1| excinuclease ABC [Listeria monocytogenes FSL R2-503]
 gi|290557712|gb|EFD91234.1| excinuclease ABC [Listeria monocytogenes FSL J2-071]
 gi|293583827|gb|EFF95859.1| excinuclease ABC [Listeria monocytogenes HPB2262]
 gi|293594632|gb|EFG02393.1| excinuclease ABC [Listeria monocytogenes FSL J1-194]
 gi|300514312|gb|EFK41371.1| excinuclease ABC, B subunit [Listeria monocytogenes FSL N1-017]
 gi|307572016|emb|CAR85195.1| excinuclease ABC, subunit B [Listeria monocytogenes L99]
 gi|328471293|gb|EGF42193.1| excinuclease ABC subunit B [Listeria monocytogenes 220]
 gi|332312919|gb|EGJ26014.1| UvrABC system protein B [Listeria monocytogenes str. Scott A]
          Length = 658

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/656 (53%), Positives = 468/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI QL+ G+    K Q LLG TG+GKTFT++ VI+ + +P +VMA
Sbjct: 5   FELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS   Y +M+V L++G  + + +LL  LV  QY R 
Sbjct: 125 SATAALFERRDVIIIASVSCIYGLGSPIEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++   R+  FG++IE I E   LTG+ I   E + I+
Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGEREHVSIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  IK EL+ RL  L  + +LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 245 PASHFVTRPDIMKKAIVNIKAELEDRLQVLRADNKLLEAQRLEQRTNYDLEMMEEMGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y P+D  + +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQIRGMFNGDQARKQMLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + +SATPG +ELE+    ++EQIIRPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEK-NPDVIEQIIRPTGLLDPIVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+ DEIN   ++  R+L+T LTK+M+EDLT YL E  ++V+Y+HSEVKTLE
Sbjct: 424 IRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG +DV+VGINLLREG+D+PE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P+++K++I  +I      D
Sbjct: 544 NENGRVIMYADKMTDSMRNSIGETERRRKIQIEYNEKHGITPKTIKKEIRGIIAATSAAD 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                   D  +  +SKK+    ++ +  +M  AA  L+FE AA +RD +  +K+ 
Sbjct: 604 EREAVKQHDLSK--MSKKERDVFIEGMEHEMKEAAKALDFERAAELRDALLEIKAE 657


>gi|309701055|emb|CBJ00353.1| UvrABC system protein B (excinuclease ABC subunit B) [Escherichia
           coli ETEC H10407]
          Length = 673

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 477/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGVMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|254251900|ref|ZP_04945218.1| Helicase subunit of the DNA excision repair complex [Burkholderia
           dolosa AUO158]
 gi|124894509|gb|EAY68389.1| Helicase subunit of the DNA excision repair complex [Burkholderia
           dolosa AUO158]
          Length = 707

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/671 (55%), Positives = 486/671 (72%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI  L++G+H     Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 32  EGSPFQLYQPYPPAGDQPTAIDTLVEGVHDGLSFQTLLGVTGSGKTFTMANTIARLGRPA 91

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 92  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 151

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+++ L+  Q
Sbjct: 152 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRSGDKLGQREVIARLIAMQ 211

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 212 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKIPR 271

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IKEEL+ RL    +EG+L+EAQRLEQR  +DLEML+  
Sbjct: 272 FTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHREGKLVEAQRLEQRTRFDLEMLQEL 331

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+++F+DESHV I Q++GMY GD  RK  
Sbjct: 332 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAVMFLDESHVLIGQLNGMYNGDRARKEN 391

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ++RPTGLVD
Sbjct: 392 LVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSATPADYE-QRVTGQIAEQVVRPTGLVD 450

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A TQV+DV  EIN     G R+L+TVLTKRMAE LTE+L +  I+VRY+HS++
Sbjct: 451 PEIEVRPASTQVDDVLTEINARVTAGERVLITVLTKRMAEQLTEFLADHGIKVRYLHSDI 510

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 511 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 570

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYADT+T+S++ AI ET RRR KQ+ +N+K  I P+ V ++I ++ID +
Sbjct: 571 RAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGV 630

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA  RD++  L
Sbjct: 631 YNPDDARAELKEAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAATRDQLALL 690

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 691 RERVFGANVGD 701


>gi|319745424|gb|EFV97731.1| excision endonuclease subunit UvrB [Streptococcus agalactiae ATCC
           13813]
          Length = 663

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/660 (54%), Positives = 482/660 (73%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           KD   F++ + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI  + +P
Sbjct: 5   KDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVITQVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL++LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNNLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ +  VE
Sbjct: 185 QFERNDIDFQRGKFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGRVLGEVE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I+  +H++T    +  A+  I+ E++ ++   EKEG+L+EAQR+ QR  YD+EML  
Sbjct: 245 HLAIFPATHFMTNDEHMEEAISKIQAEMENQVELFEKEGKLIEAQRIRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKE 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L  YGFRLPS +DNRPLR EE+       + VSATPG +E+ Q    +VEQIIRPTGL+
Sbjct: 365 MLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMGQT-DTVVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R +  Q++D+  EINL  ++G R  +T LTKRMAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN N  VI+YAD IT S+Q A+DET RRR  Q+++N+KH I PQ++K++I ++I  
Sbjct: 544 GRAARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKEIRDLIAI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               D+      +D    SLSKK+ +A +K+L+KQM  AA+ L+FE AA+IRD I +LK+
Sbjct: 604 TKSNDSDKPEKIVD--YSSLSKKERQAEIKALQKQMQEAAELLDFELAAQIRDVILKLKA 661


>gi|324990987|gb|EGC22921.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK353]
          Length = 662

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTDYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI   A++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEITARAEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSDGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKEMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|168230684|ref|ZP_02655742.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194471840|ref|ZP_03077824.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194458204|gb|EDX47043.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205334847|gb|EDZ21611.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 673

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 475/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----- 733
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 734 ---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                   +    +       +L ++ K  +  +  L  QM   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGKGKGRSTAKGGIVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|110833806|ref|YP_692665.1| excinuclease ABC subunit B [Alcanivorax borkumensis SK2]
 gi|110646917|emb|CAL16393.1| excinuclease ABC, B subunit [Alcanivorax borkumensis SK2]
          Length = 671

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/669 (56%), Positives = 482/669 (72%), Gaps = 8/669 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++ +DY P+GDQP AIAQL++GI      Q LLGVTGSGKTFTMA VI    RP I+
Sbjct: 4   SLFKLHSDYQPAGDQPTAIAQLIEGIDDGLGHQTLLGVTGSGKTFTMANVIAQTGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY EF+ FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NEQI++M
Sbjct: 64  MAPNKTLAAQLYGEFREFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEQIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D I+V++VS IYG+G   SY  M++ L  GD ++Q+ELL  L + QY 
Sbjct: 124 RLSATKAILERPDTIIVATVSAIYGLGDPASYHAMVLHLVRGDHIDQRELLRRLAELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R ++   R T+RV GD I+IFP+  E  A R+ +F +++E IS F PLTG+ IR +    
Sbjct: 184 RNEMDFRRATYRVRGDVIDIFPAEEEKEAVRIELFDDEVESISIFDPLTGEVIRRISRTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYVTPR T+  A++ IKEEL  RL EL+++ +L+EAQRLEQR  +D+EML+  G 
Sbjct: 244 IYPKSHYVTPRETVLKAVEMIKEELAERLAELKEQNKLVEAQRLEQRTRFDIEMLQELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  +ENYSR  +GR PG+ PPTLF+Y+P+++LL  DESHVTIPQ+  MY+GD  RK TL 
Sbjct: 304 CNGVENYSRLFSGRAPGDAPPTLFDYLPDNALLIADESHVTIPQLGAMYKGDRSRKETLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            +GFRLPS MDNRPL+FEEW  L P  + VSATPG +E ++  G +VEQ++RPTGLVDP 
Sbjct: 364 SFGFRLPSAMDNRPLKFEEWELLAPQMVFVSATPGPYE-KKYAGQVVEQVVRPTGLVDPK 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR A TQV+D+  E      +  R+L+T LTKRMAEDLTEYL E  IRVRY+HS++ T
Sbjct: 423 IEIRPATTQVDDLLGEAKECIAKEQRVLVTTLTKRMAEDLTEYLNEHGIRVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSDRSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-- 736
           ARNV+ + ILYAD +T S++ AIDET RRREKQ   N+ + I PQ + +KI +++D    
Sbjct: 543 ARNVDGRAILYADKMTGSMERAIDETDRRREKQEAFNEANGITPQGLNKKIRDIMDDSGG 602

Query: 737 -----LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                  +       S      + S  +    +K+L  +M   A NL FE+AA  RD+I 
Sbjct: 603 SRFDRKYKGEKKVAESPSDYLGARSPAQVAKEIKALEAKMMEHAKNLEFEDAAATRDKIH 662

Query: 792 RLKSSPYFQ 800
           +L+   + +
Sbjct: 663 QLRELGFMR 671


>gi|16764161|ref|NP_459776.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62179366|ref|YP_215783.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161614965|ref|YP_001588930.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167550526|ref|ZP_02344283.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167992027|ref|ZP_02573125.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168236724|ref|ZP_02661782.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168263705|ref|ZP_02685678.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168466385|ref|ZP_02700247.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168820061|ref|ZP_02832061.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194445085|ref|YP_002040034.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194735904|ref|YP_002113891.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197250972|ref|YP_002145754.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197263555|ref|ZP_03163629.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198242425|ref|YP_002214763.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200390141|ref|ZP_03216752.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205352057|ref|YP_002225858.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207856236|ref|YP_002242887.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224582612|ref|YP_002636410.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238913358|ref|ZP_04657195.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|20532285|sp|Q8ZQQ4|UVRB_SALTY RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|81309740|sp|Q57RF9|UVRB_SALCH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189037997|sp|A9MTI2|UVRB_SALPB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226698337|sp|B5F076|UVRB_SALA4 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226698338|sp|B5FP65|UVRB_SALDC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226698339|sp|B5QX69|UVRB_SALEP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226698340|sp|B5R765|UVRB_SALG2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238693567|sp|B4SZK1|UVRB_SALNS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238693660|sp|B4TQU3|UVRB_SALSV RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|254764908|sp|C0PWY7|UVRB_SALPC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|16419304|gb|AAL19735.1| UvrB with UvrAC is a DNA excision repair enzyme [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|62126999|gb|AAX64702.1| UvrB with UvrAC is a DNA excision repair enzyme [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161364329|gb|ABX68097.1| hypothetical protein SPAB_02719 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403748|gb|ACF63970.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194711406|gb|ACF90627.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195630935|gb|EDX49521.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197214675|gb|ACH52072.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197241810|gb|EDY24430.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197290228|gb|EDY29585.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197936941|gb|ACH74274.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199602586|gb|EDZ01132.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205271838|emb|CAR36672.1| excision nuclease ABC subunit B [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205324631|gb|EDZ12470.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205329601|gb|EDZ16365.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205343219|gb|EDZ29983.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205347694|gb|EDZ34325.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206708039|emb|CAR32329.1| excision nuclease ABC subunit B [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224467139|gb|ACN44969.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261246056|emb|CBG23858.1| excision nuclease ABC subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992538|gb|ACY87423.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157384|emb|CBW16873.1| excision nuclease ABC subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911821|dbj|BAJ35795.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320085070|emb|CBY94857.1| UvrABC system protein B Protein uvrB; Excinuclease ABC subunit B
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321226372|gb|EFX51423.1| Excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322613853|gb|EFY10791.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620352|gb|EFY17219.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622778|gb|EFY19623.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628690|gb|EFY25477.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631628|gb|EFY28384.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637154|gb|EFY33857.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322641646|gb|EFY38282.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322648027|gb|EFY44497.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648491|gb|EFY44943.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654228|gb|EFY50551.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658143|gb|EFY54410.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663617|gb|EFY59819.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322670353|gb|EFY66493.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671589|gb|EFY67711.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676945|gb|EFY73012.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682870|gb|EFY78889.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686549|gb|EFY82531.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322713837|gb|EFZ05408.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323129106|gb|ADX16536.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323194554|gb|EFZ79747.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199115|gb|EFZ84211.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202071|gb|EFZ87130.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208904|gb|EFZ93841.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323213457|gb|EFZ98251.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215259|gb|EGA00005.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220821|gb|EGA05259.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227121|gb|EGA11299.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229937|gb|EGA14060.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233162|gb|EGA17258.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240897|gb|EGA24939.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243214|gb|EGA27234.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248753|gb|EGA32681.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251757|gb|EGA35624.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323258751|gb|EGA42408.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260704|gb|EGA44309.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267860|gb|EGA51339.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268756|gb|EGA52216.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326622518|gb|EGE28863.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326627099|gb|EGE33442.1| excinuclease ABC, B subunit [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332987729|gb|AEF06712.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 673

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 475/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----- 733
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 734 ---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                   +    +       +L ++ K  +  +  L  QM   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|319939262|ref|ZP_08013625.1| UvrABC system protein B [Streptococcus anginosus 1_2_62CV]
 gi|319811658|gb|EFW07934.1| UvrABC system protein B [Streptococcus anginosus 1_2_62CV]
          Length = 662

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/655 (53%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI+ + +P +V+A
Sbjct: 10  FKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIQKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDQLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  I+ EL+ +L   E+EG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFMTNDENMEIAIGKIQAELEEQLAFFEREGKLLEAQRLKQRTDYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEREQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN  A++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARAEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADTIT S+Q A++ET RRR+ Q+ +N++H I PQ+++++I ++I    +  
Sbjct: 549 NSEGHVIMYADTITDSMQKAMNETARRRQIQMAYNEEHGIVPQTIQKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +        +L+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEEVVDIENLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|194289257|ref|YP_002005164.1| excinuclease ABC subunit b [Cupriavidus taiwanensis LMG 19424]
 gi|193223092|emb|CAQ69097.1| ATP-dependent DNA excision repair enzyme, DNA damage recognition
           component [Cupriavidus taiwanensis LMG 19424]
          Length = 694

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/670 (54%), Positives = 485/670 (72%), Gaps = 4/670 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+   + P+GDQP AI QL++G+      Q LLGVTGSGKTFTMA VI  + RPAIV
Sbjct: 22  SPFQLYQPFPPAGDQPEAIRQLVEGVEDGLSYQTLLGVTGSGKTFTMANVIARLGRPAIV 81

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I++M
Sbjct: 82  FAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQM 141

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+SLLER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  QY 
Sbjct: 142 RLSATKSLLERRDTVIVATVSAIYGIGNPTEYHQMILTLRAGDKISQRDVIARLIAMQYT 201

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +    RGTFRV GD+I+IFP+   ++A R+ MF +++E +  F PLTG+  + +    
Sbjct: 202 RNETDFQRGTFRVRGDTIDIFPAEHAEMAVRLEMFDDEVESLHFFDPLTGRVRQKIPRFT 261

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +SHYVTPR T+  A++ IK EL+ RL    KE RL+EAQRLEQR  +DLEML   G 
Sbjct: 262 VYPSSHYVTPRETVLRAIEAIKAELRERLEFFHKENRLVEAQRLEQRTRFDLEMLSELGF 321

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+G  PG+PPPTL +Y+P D+L+F+DESHV I Q++GMY GD  RK TL 
Sbjct: 322 CKGIENYSRHLSGARPGDPPPTLVDYLPPDALMFLDESHVLIGQLNGMYNGDRARKTTLV 381

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+F+E+       + V+ATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 382 EYGFRLPSALDNRPLKFDEFERKMRQVMFVTATPAQFEQEHA-GQVVEQVVRPTGLVDPI 440

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R A TQV+D+  EI+   + G R+L+T LTKRMAE LTE+L E  ++VRY+HS++ T
Sbjct: 441 IMVRPATTQVDDLLSEIHARVEAGERVLVTTLTKRMAEQLTEFLTENGVKVRYLHSDIDT 500

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 501 VERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA 560

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD +T S++ AIDET RRR KQ+  N+ + I P+ V ++I ++ID +  
Sbjct: 561 ARNVNGTAILYADRMTDSMKKAIDETERRRAKQIAFNEANGITPRGVVKRIKDIIDGVYN 620

Query: 739 EDAATTNISIDAQQ---LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              A   +    +Q     +S+K+    +K L K M   A NL FE+AA++RD++ +LK+
Sbjct: 621 ASDAKAELQAAQEQARYEDMSEKQVSREIKRLEKLMLDHARNLEFEQAAQVRDQLAKLKA 680

Query: 796 SPYFQGLDDS 805
             +    + +
Sbjct: 681 QVFGASGEGA 690


>gi|254247696|ref|ZP_04941017.1| Excinuclease ABC, B subunit [Burkholderia cenocepacia PC184]
 gi|124872472|gb|EAY64188.1| Excinuclease ABC, B subunit [Burkholderia cenocepacia PC184]
          Length = 707

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/671 (53%), Positives = 483/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 32  EGSPFQLYQPYPPAGDQPTAIDTLVEGVGDGLAFQTLLGVTGSGKTFTMANTIARLGRPA 91

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 92  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 151

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 152 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRAGDKLGQRDVIARLIAMQ 211

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 212 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKIPR 271

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +DLEML+  
Sbjct: 272 FTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRFDLEMLQEL 331

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PG+PPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 332 GFCKGIENYSRHFSGAAPGDPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 391

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ++RPTGLVD
Sbjct: 392 LVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQVVRPTGLVD 450

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A +QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 451 PEIEVRPASSQVDDVLTEINARVKAGERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 510

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 511 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 570

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RA RNVN K ILYAD +T+S++ AI ET RRR KQ+ +N+K  I P+ V ++I ++ID +
Sbjct: 571 RAGRNVNGKAILYADNMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGV 630

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA  RD++  L
Sbjct: 631 YNADDARAELKEAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAAATRDQLAVL 690

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 691 RERVFGANVGD 701


>gi|77409684|ref|ZP_00786351.1| excinuclease ABC, B subunit [Streptococcus agalactiae COH1]
 gi|77171705|gb|EAO74907.1| excinuclease ABC, B subunit [Streptococcus agalactiae COH1]
          Length = 663

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/660 (54%), Positives = 481/660 (72%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           KD   F++ + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI  + +P
Sbjct: 5   KDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL++LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNNLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E FP+  ++ A+R+  FG++I+ I E   LTG+ +  VE
Sbjct: 185 QFERNDIDFQRGKFRVRGDVVEFFPASRDEHAFRIEFFGDEIDRIREIESLTGRVLGEVE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I+  +H++T    +  A+  I+ E++ ++   EKEG+L+EAQR+ QR  YD+EML  
Sbjct: 245 HLAIFPATHFMTNDEHMEEAISKIQAEMENQVELFEKEGKLIEAQRIRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKE 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L  YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ    +VEQIIRPTGL+
Sbjct: 365 MLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQT-DTVVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R +  Q++D+  EINL  ++G R  +T LTKRMAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN N  VI+YAD IT S+Q A+DET RRR  Q+++N+KH I PQ++K++I ++I  
Sbjct: 544 GRAARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKEIRDLIAI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               D+      +D    SLSKK+ +A +K+L+KQM  AA+ L+FE AA+IRD I  LK+
Sbjct: 604 TKSNDSDKPEKVVD--YSSLSKKERQAKIKALQKQMQDAAELLDFELAAQIRDVILELKA 661


>gi|291549964|emb|CBL26226.1| excinuclease ABC, B subunit [Ruminococcus torques L2-14]
          Length = 661

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/658 (53%), Positives = 471/658 (71%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y+P+GDQP AI +L++G     + Q LLGVTGSGKTFTMA VI+ M +P +
Sbjct: 1   MDHFELVSQYNPTGDQPQAIKELVEGFKEGNQCQTLLGVTGSGKTFTMANVIQQMNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID+
Sbjct: 61  IIAHNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SL+ER D I+V+SVSCIYG+G+   Y  M+V L+ G   ++ E+++ L++ QY
Sbjct: 121 LRLSATMSLMERRDVIIVASVSCIYGLGNPVDYQNMVVSLRPGMIKDRDEVMAKLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD +EI P++  D A RV  FG++I+ ISE   LTG+    ++ +
Sbjct: 181 DRNDMDFHRGTFRVRGDVLEIIPAYESDTAIRVEFFGDEIDRISEIDILTGEVKDELKHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV  R  +  A+  I+EEL+ R+ E ++  +LLEAQR+ +R  +D+EML+ TG
Sbjct: 241 AIFPASHYVVDRENIKRAVADIEEELEERVKEFKRNDKLLEAQRIAERTNFDIEMLKETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L G  PG+ P TL +Y P+D ++ +DESH TIPQI GMY GD  RK TL
Sbjct: 301 FCSGIENYSRHLAGLRPGQAPYTLIDYFPDDFIMMIDESHKTIPQIGGMYHGDQSRKQTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL F+E+       + VSATPG +E    + +  EQ+IRPTGL+DP
Sbjct: 361 VDYGFRLPSAKDNRPLNFDEFESKINQVMFVSATPGEYEKNH-ELLRAEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++D+  E+N    +  ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ 
Sbjct: 420 EVEVRPVEGQIDDLIGEVNKEISKKNKVLVTTLTKRMAEDLTDYMREVGIRVKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD IT+S+QLAIDET RRRE Q+ +N++H I P+++++ + ++I    
Sbjct: 540 AARNAEGHVIMYADKITESMQLAIDETQRRREIQMRYNEEHGITPKTIQKSVRDLISISK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              A    +  D +  S+S+K+ +  +  L KQM  AA  LNFE AA +RD++  LK 
Sbjct: 600 KVAAEEMRLEKDPE--SMSQKELEKLIADLTKQMKKAAAELNFEAAAELRDKLVELKK 655


>gi|220934929|ref|YP_002513828.1| excinuclease ABC subunit B [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996239|gb|ACL72841.1| excinuclease ABC subunit B [Thioalkalivibrio sp. HL-EbGR7]
          Length = 674

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/664 (57%), Positives = 491/664 (73%), Gaps = 6/664 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++T Y P+GDQPAAI +L++G+      Q+LLGVTGSGKTFT+A VI+  QRP I++A
Sbjct: 5   FTLKTGYTPAGDQPAAIEKLVEGLEDGLAHQVLLGVTGSGKTFTIANVIQRTQRPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G V +Y QM++ LK GD V+Q+++L  L + QY R 
Sbjct: 125 SATRALLERRDAIIVASVSAIYGLGDVNAYMQMVLHLKRGDRVDQRDILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RGT+RV G+ I+I P+  E  A R+ +F ++IE++S F PLTG+ ++ V  + +Y
Sbjct: 185 DMELRRGTYRVRGEVIDIHPAESEREAVRIELFDDEIEQLSYFDPLTGEILKRVARLTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR T+  A++ IK EL+ RL +L    +L+EAQRLEQR  +D+EM+   G C 
Sbjct: 245 PKTHYVTPRETILGAVEQIKVELRERLEQLRSVEKLVEAQRLEQRTIFDIEMMLEVGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPP  F+Y+P+D+LL VDESHVT+PQ+ GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRKPGEPPPCFFDYLPKDALLVVDESHVTVPQLGGMYRGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P  I VSATPG +ELE   G +VEQ++RPTGLVDP VE
Sbjct: 365 GFRLPSALDNRPLRFEEFEALSPQAIYVSATPGPYELEHA-GQVVEQVVRPTGLVDPEVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DV  EI        R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ T+E
Sbjct: 424 VRPATHQVDDVLSEIRARVAVNQRVLITTLTKRMAEDLTEYLHEHDVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 484 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ K ILYAD IT S+  A++ET RRREKQ+ HN +H I P+SV+++I ++++      
Sbjct: 544 NVHGKAILYADRITGSMARAMEETERRREKQIAHNLEHGITPRSVEKRIADIMEGAYAGG 603

Query: 741 AATT-----NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +  +      ++ +     L  +K    +  L  QM+  A NL FEEAA +RD I+ L+ 
Sbjct: 604 SMASPKRFAKVAEEEIAYGLPPEKAVKEIARLESQMYEHARNLEFEEAALLRDRIEHLRK 663

Query: 796 SPYF 799
               
Sbjct: 664 GSLG 667


>gi|332523810|ref|ZP_08400062.1| excinuclease ABC, B subunit [Streptococcus porcinus str. Jelinkova
           176]
 gi|332315074|gb|EGJ28059.1| excinuclease ABC, B subunit [Streptococcus porcinus str. Jelinkova
           176]
          Length = 663

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/659 (53%), Positives = 474/659 (71%), Gaps = 3/659 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           ++   F + + Y PSGDQP AIA+L+  I   EK Q+LLG TG+GKTFTM++VI  + +P
Sbjct: 5   RENNTFHLVSKYQPSGDQPQAIAELVDNIEGGEKAQILLGATGTGKTFTMSQVINQVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ +   E
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKVLGEAE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL+ +L   E EG+LLEAQRL+QR  YD+EML  
Sbjct: 245 HLVLFPATHFVTNDEHMEASIAKIQAELEEQLQLFESEGKLLEAQRLKQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRSAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKK 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+ Q    ++EQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMAQT-DTVIEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +E+R +  Q++D+  EIN  + +G R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPIIEVRPSMGQMDDLLGEINTRSAKGERCFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN   +VI+YAD +T S+Q AIDET RRR  Q+ +N+KH I PQ++K+ I ++I  
Sbjct: 544 GRAARNSEGRVIMYADKMTDSMQKAIDETARRRHIQMAYNEKHGIVPQTIKKDIRDLIAI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                + +   S D    S+++ + K  +K L+KQM  AA+ L+FE AA IRD I  LK
Sbjct: 604 TKGTGSESVEESTD--YASMNRTERKEAIKKLQKQMQEAAELLDFELAAEIRDLILELK 660


>gi|322412040|gb|EFY02948.1| excinuclease ABC subunit B [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 663

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/659 (53%), Positives = 475/659 (72%), Gaps = 3/659 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +D   F + + Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P
Sbjct: 5   RDNKPFHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVINKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT +LLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  
Sbjct: 125 DKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ I  V+
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKTIGEVD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL+ +L   E EG+LLEAQRL QR  YD+EML  
Sbjct: 245 HLILFPATHFVTNDEHMEQSIAKIQAELEDQLKVFEAEGKLLEAQRLRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR  GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRAAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ    IVEQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQT-DTIVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +++R +  Q++D+  EIN   ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEIDVRPSMGQMDDLLGEINQRVERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN +  VI+YAD +T+S+Q AIDET RRRE Q+ +N+ H I PQ++K+ I ++I  
Sbjct: 544 GRAARNADGHVIMYADKVTESMQRAIDETARRREIQMAYNETHGIIPQTIKKDIRDLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               ++     ++D    ++S+ + K  +K+L+KQM  AA+ L+FE AA+IRD I  LK
Sbjct: 604 SKAAESDVAETAVD--YETMSRSERKEAIKTLQKQMQEAAELLDFEMAAQIRDMILELK 660


>gi|16801694|ref|NP_471962.1| excinuclease ABC subunit B [Listeria innocua Clip11262]
 gi|21542285|sp|Q928A4|UVRB_LISIN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|16415169|emb|CAC97859.1| excinuclease ABC (subunit B) [Listeria innocua Clip11262]
          Length = 658

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/656 (53%), Positives = 469/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI QL+ G+    K Q LLG TG+GKTFT++ VI+ + +P +VMA
Sbjct: 5   FELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS   Y +M+V L++G  + + +LL  LV  QY R 
Sbjct: 125 SATAALFERRDVIIIASVSCIYGLGSPVEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++   R+  FG++IE I E   LTG+ I + E + I+
Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGDREHVSIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  IK EL+ RL  L  E +LLEAQRLEQR  YD+EM+E  G C 
Sbjct: 245 PASHFVTRPDIMKKAIVNIKAELEDRLKVLRAENKLLEAQRLEQRTNYDIEMMEEMGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y P+D  + +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLSLRPAGVTPYTLLDYFPDDFQIVIDESHVTMPQIRGMFNGDQARKQMLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + +SATPG +ELE+    ++EQIIRPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEK-NPDVIEQIIRPTGLLDPIVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+ DEIN   ++  R+L+T LTK+M+EDLT YL E  ++V+Y+HSEVKTLE
Sbjct: 424 IRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG +DV+VGINLLREG+D+PE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P++++++I  +I      D
Sbjct: 544 NENGRVIMYADKMTDSMRNSISETERRRKIQIEYNEKHGITPKTIRKEIRGIIAATSAAD 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                   D  +  +SKK+    ++ +  +M  AA  L+FE AA +RD +  +K+ 
Sbjct: 604 EREAIKQHDLSK--MSKKERDIFIEGMEHEMKEAAKALDFERAAELRDALLEIKAE 657


>gi|293390328|ref|ZP_06634662.1| excinuclease ABC subunit B [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290950862|gb|EFE00981.1| excinuclease ABC subunit B [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 680

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/672 (55%), Positives = 482/672 (71%), Gaps = 9/672 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + + + PSGDQP AIA+L + +      Q LLGVTGSGKTFT+A VI  + RPA
Sbjct: 6   NTKPFILHSHFKPSGDQPQAIAKLAENLEDGLAHQTLLGVTGSGKTFTIANVIAQLNRPA 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+APNK LAAQLY+E K+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI+
Sbjct: 66  MVLAPNKTLAAQLYAEMKDFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIE 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+S LER D IVV+SVS IYG+G  +SY +M++ L+ G  + Q+++L+ L + Q
Sbjct: 126 QMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQQGAIINQRQILAKLAELQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV G+ I+IFP+  +D A R+ +F  +IE +S F PLTG     V  
Sbjct: 186 YTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDGEIERLSLFDPLTGSSFGTVPR 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y  +HYVTPR  +  A++ IK EL  R     KE +LLE QR+ QR  +D+EM+   
Sbjct: 246 FTVYPKTHYVTPRERILDAIEKIKLELAQRREYFTKENKLLEEQRISQRTQFDIEMMNEL 305

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRYL+ RN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK T
Sbjct: 306 GYCSGIENYSRYLSDRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKET 365

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+  G I++Q++RPTGL+D
Sbjct: 366 LVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGGEIIDQVVRPTGLLD 425

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EIR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++
Sbjct: 426 PQIEIRPVSIQVDDLLSEARHRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDI 485

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 486 DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 545

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN++ K ILYAD ITKS++ AI ET RRREKQ ++N+   I PQ++ +K+ E++D  
Sbjct: 546 RAARNLHGKAILYADNITKSMEKAITETNRRREKQAKYNEAQGIMPQALNKKVGELLDIG 605

Query: 737 LLEDAATTNISIDAQQLS---------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
              +          + ++          S K+ +  +K L +QM+  A +L FE+AA  R
Sbjct: 606 QGANQKAKANKQRGKTVAEPTALYTTLKSPKEYQQQIKKLEQQMYKFAQDLEFEKAAATR 665

Query: 788 DEIKRLKSSPYF 799
           D++++L+ S   
Sbjct: 666 DQLQQLRESFML 677


>gi|16759723|ref|NP_455340.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29142504|ref|NP_805846.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213052115|ref|ZP_03344993.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213616344|ref|ZP_03372170.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213647606|ref|ZP_03377659.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213850300|ref|ZP_03381198.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289825272|ref|ZP_06544551.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|20532283|sp|Q8Z889|UVRB_SALTI RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|25300651|pir||AD0597 excision nuclease ABC chain B STY0831 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502016|emb|CAD05246.1| excision nuclease ABC subunit B [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138135|gb|AAO69706.1| excision nuclease ABC subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 673

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 476/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----- 733
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 734 ---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                   +    +       +L ++ K  +  +  L +QM   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEEQMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|110678580|ref|YP_681587.1| excinuclease ABC subunit B [Roseobacter denitrificans OCh 114]
 gi|109454696|gb|ABG30901.1| excinuclease ABC, B subunit [Roseobacter denitrificans OCh 114]
          Length = 732

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/666 (62%), Positives = 524/666 (78%), Gaps = 1/666 (0%)

Query: 130 SINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI 189
                 +    F++ TD+ P+GDQP AI +L  G+ S E+ Q+LLG TG+GKTFTMAKVI
Sbjct: 21  RAREKLEGGKRFKLATDFEPAGDQPTAIKELAAGVLSGERDQVLLGATGTGKTFTMAKVI 80

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
           E  QRPAI++APNK LAAQLY EFK FFP NAVEYFVS+YDYYQPEAYV R+DTYIEKES
Sbjct: 81  EETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSFYDYYQPEAYVARSDTYIEKES 140

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELL 309
            INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   LK G   +Q++++
Sbjct: 141 QINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLKTGRMYDQRQVM 200

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369
           + LV QQY+R D    RG+FRV GDS+EIFP+HLED AW++S FG ++E I+EF PLTG+
Sbjct: 201 ADLVAQQYRRNDQSFQRGSFRVRGDSLEIFPAHLEDRAWKLSFFGEELESITEFDPLTGE 260

Query: 370 KIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD 429
           K    E I++YANSHYVTP+PT+  A+  IK+EL+ RL +L  +G+LLEAQRLEQR  +D
Sbjct: 261 KTNTFEQIRVYANSHYVTPKPTMQQAIISIKKELRTRLDQLVGDGKLLEAQRLEQRTNFD 320

Query: 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG 489
           LEMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+G
Sbjct: 321 LEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKG 380

Query: 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
           D+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE++Q  G+  EQII
Sbjct: 381 DYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMDQTGGVFTEQII 440

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           RPTGL+DP +EIR    QV+D+ DE+   A  G R L+T LTKRMAEDLTEY++E+ IRV
Sbjct: 441 RPTGLIDPEIEIRPVEMQVDDLLDEVRKVAADGFRTLVTTLTKRMAEDLTEYMHEQGIRV 500

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           RYMHS++ TLERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+T
Sbjct: 501 RYMHSDIDTLERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSET 560

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           SLIQT GRAARN   +VI+YAD IT S++ AI+ET RRR KQ+ +N+KH I P +VK+ +
Sbjct: 561 SLIQTTGRAARNAEGRVIMYADRITGSMERAIEETNRRRAKQIAYNEKHGITPTTVKKNV 620

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            +++  +   D   + ++    +  ++    +A L  LR  M  AA+NL FEEAAR+RDE
Sbjct: 621 EDILAGLYKGDTDQSRVTAKIDKQ-MAGGNLQAVLDGLRTDMRKAAENLEFEEAARLRDE 679

Query: 790 IKRLKS 795
           +KRL++
Sbjct: 680 VKRLEA 685


>gi|313622414|gb|EFR92875.1| excinuclease ABC subunit B [Listeria innocua FSL J1-023]
          Length = 663

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/656 (53%), Positives = 469/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI QL+ G+    K Q LLG TG+GKTFT++ VI+ + +P +VMA
Sbjct: 10  FELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS   Y +M+V L++G  + + +LL  LV  QY R 
Sbjct: 130 SATAALFERRDVIIIASVSCIYGLGSPVEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++   R+  FG++IE I E   LTG+ I + E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGDREHVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  IK EL+ RL  L  E +LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 250 PASHFVTRPDIMKKAIVNIKAELEDRLKVLRAENKLLEAQRLEQRTNYDLEMMEEMGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y P+D  + +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 310 GIENYSRHLSLRPAGVTPYTLLDYFPDDFQIVIDESHVTMPQIRGMFNGDQARKQMLVDH 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + +SATPG +ELE+    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEK-NPDVIEQIIRPTGLLDPIVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+ DEIN   ++  R+L+T LTK+M+EDLT YL E  ++V+Y+HSEVKTLE
Sbjct: 429 IRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG +DV+VGINLLREG+D+PE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 489 RIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P++++++I  +I      D
Sbjct: 549 NENGRVIMYADKMTDSMRNSISETERRRKIQIEYNEKHGITPKTIRKEIRGIIAATSAAD 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                   D  +  +SKK+    ++ +  +M  AA  L+FE AA +RD +  +K+ 
Sbjct: 609 EREAVKQHDLSK--MSKKERDIFIEGMEHEMKEAAKALDFERAAELRDALLEIKAE 662


>gi|91782672|ref|YP_557878.1| excinuclease ABC subunit B [Burkholderia xenovorans LB400]
 gi|91686626|gb|ABE29826.1| Excinuclease ABC subunit B [Burkholderia xenovorans LB400]
          Length = 701

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/673 (54%), Positives = 484/673 (71%), Gaps = 4/673 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           S + + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + R
Sbjct: 24  SFEGSPFQLYQPYPPAGDQPTAIDTLVEGVEDGLAFQTLLGVTGSGKTFTMANTIARLGR 83

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE 
Sbjct: 84  PAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEH 143

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT+SL+ER D ++V++VS IYGIG+   Y +MI+ L+ GD + Q+++++ L+ 
Sbjct: 144 IEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHRMILTLRTGDKLGQRDIIARLIA 203

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R +    RG+FRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +
Sbjct: 204 MQYNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKI 263

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               +Y +SHYVTPR T+  A++ IK EL+ RL      G+L+EAQRLEQR  +DLEML+
Sbjct: 264 PRFTVYPSSHYVTPRDTVVRAVETIKTELRERLEFFYAGGKLVEAQRLEQRTRFDLEMLQ 323

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C+ IENYSR+ +G  PGEPPPTL +Y+P D+++ +DESHV I Q++GMY GD  RK
Sbjct: 324 ELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAIMMLDESHVLIGQLNGMYNGDRARK 383

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G + EQ++RPTGL
Sbjct: 384 ENLVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-QKTAGQVAEQLVRPTGL 442

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           VDP +E+R AR+QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++VRY+HS
Sbjct: 443 VDPEIEVRPARSQVDDVLGEINERVKVGDRVLVTVLTKRMAEQLTEFLADHGVKVRYLHS 502

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQT
Sbjct: 503 DIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQT 562

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARNVN K ILYAD +T S++ AIDET RRR KQ+  N ++ I P+ V ++I ++ID
Sbjct: 563 IGRAARNVNGKAILYADRVTDSMRRAIDETERRRNKQIAFNLENGITPRGVVKRIRDIID 622

Query: 735 PILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            +   D A   +      A+   +S+K+    LK L KQM   A NL FE+AA+ RD++ 
Sbjct: 623 GVYNVDDARAELKEQQARAKFEDMSEKQLARELKRLEKQMMEHAKNLEFEKAAQTRDQLA 682

Query: 792 RLKSSPYFQGLDD 804
            L+   +   + D
Sbjct: 683 LLRQRVFGANVGD 695


>gi|73663268|ref|YP_302049.1| excinuclease ABC subunit B [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|90111054|sp|Q49VV6|UVRB_STAS1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|72495783|dbj|BAE19104.1| excinuclease ABC subunit B [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 660

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/657 (52%), Positives = 466/657 (70%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +++ P GDQP AI +++ G++  ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 5   PFKLHSEFEPQGDQPEAIQKIVNGVNEGKRHQTLLGATGTGKTFTMSNVIKQVGKPTLII 64

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 65  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 124

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D IV++SVSCIYG+G+ E Y  ++V ++ G  +++ ELL  LV  QY R
Sbjct: 125 HSATSALFERDDVIVIASVSCIYGLGNPEEYRDLVVSIRAGMEMDRSELLKKLVDVQYTR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ +R  +   I
Sbjct: 185 NDIDFRRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVLRERDHFAI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    + +A++ I+ EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 245 FPASHFVTREEKMKSAIQRIENELEERLAELNAENKLLEAQRLEQRTNYDLEMMREMGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQI GMY GD  RK  L +
Sbjct: 305 SGIENYSVHLTLRPMGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLVD 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +ELE     +V+QIIRPTGL+DP +
Sbjct: 365 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPFELEHTDE-MVQQIIRPTGLLDPKI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI     +  R+L+T LTK+M+EDLT YL E  I+V Y+HSE+KTL
Sbjct: 424 EVRPTENQIDDLLGEIQDRIDRNERVLVTTLTKKMSEDLTIYLKEAGIKVNYLHSEIKTL 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS+ SL+QTIGRAA
Sbjct: 484 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSQRSLVQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+Y D IT S++ A+DET RRR  Q  +N+KHNI P ++ +KI +VI   +  
Sbjct: 544 RNSRGEVIMYGDKITDSMRYALDETERRRTIQEAYNEKHNITPTTINKKIHDVISATVEN 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D        +  +  ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 604 DETNEQQQTEVPK-KMTKKEREKTIANIEKEMKQAAKDLDFEKATELRDMLFELKAE 659


>gi|254296830|ref|ZP_04964284.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 406e]
 gi|157806679|gb|EDO83849.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 406e]
          Length = 679

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/671 (54%), Positives = 482/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y PSGDQP AIA L++G+      Q LLGVTGSGKT+TMA  I  + RPA
Sbjct: 4   EGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANTIARLGRPA 63

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 64  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 123

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+++ L+  Q
Sbjct: 124 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREVIARLIAMQ 183

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG+  + +  
Sbjct: 184 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTGRVRQKIPR 243

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +DLEML+  
Sbjct: 244 FTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRFDLEMLQEL 303

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 304 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 363

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL+F E+       + VSATP  +E     G   EQ++RPTGLVD
Sbjct: 364 LVDYGFRLPSALDNRPLKFPEFERKMRQMVFVSATPADYEQRVS-GQTAEQVVRPTGLVD 422

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 423 PQIEVRPASTQVDDVLSEITERVKANERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 482

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 483 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 542

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N+K  I P+ V ++I ++ID +
Sbjct: 543 RAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGV 602

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA+ RD++  L
Sbjct: 603 YNADEARAELKEAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAQTRDQLALL 662

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 663 RERVFGANVGD 673


>gi|228477022|ref|ZP_04061660.1| excinuclease ABC subunit B [Streptococcus salivarius SK126]
 gi|228251041|gb|EEK10212.1| excinuclease ABC subunit B [Streptococcus salivarius SK126]
          Length = 663

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/660 (53%), Positives = 482/660 (73%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K+   F + + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI+ + +P
Sbjct: 5   KEDNQFHLVSKYEPSGDQPQAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQRVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYD+YQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT +LLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  
Sbjct: 125 DKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE
Sbjct: 185 QFERNDIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRICEIESLTGRNLGEVE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H++T    +  A+K I EE++ ++ + E EG+L+EAQR+ QR  YD+EML  
Sbjct: 245 HLVLFPATHFMTNEEHMEEAIKNIMEEMEAQVKQFEAEGKLIEAQRIRQRTEYDVEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR  GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKK 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +VEQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R    Q++D+  EIN   ++G R+ +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN    VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I  
Sbjct: 544 GRAARNSEGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGIVPQTIKKEIRDLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             + +A     ++D    +++KK+ +  +K L+KQMH AA+ L+FE AA+IRD +  LKS
Sbjct: 604 TKVNEAEVAEDTVD--YSAMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLELKS 661


>gi|189351000|ref|YP_001946628.1| excinuclease ABC subunit B [Burkholderia multivorans ATCC 17616]
 gi|189335022|dbj|BAG44092.1| excinuclease ABC subunit B [Burkholderia multivorans ATCC 17616]
          Length = 704

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/671 (54%), Positives = 485/671 (72%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 29  EGSPFQLYQPYPPAGDQPTAIDTLVEGVQDGLAFQTLLGVTGSGKTFTMANTIARLGRPA 88

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 89  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 148

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 149 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQRDVIARLIAMQ 208

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 209 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKIPR 268

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IKEEL+ RL    +EG+L+EAQRLEQR  +DLEML+  
Sbjct: 269 FTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHREGKLVEAQRLEQRTRFDLEMLQEL 328

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 329 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 388

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ++RPTGLVD
Sbjct: 389 LVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSATPADYE-QRVTGQIAEQVVRPTGLVD 447

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A +QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  I+VRY+HS++
Sbjct: 448 PEIEVRPASSQVDDVLTEINARVKAGERVLITVLTKRMAEQLTEFLADHGIKVRYLHSDI 507

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 508 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 567

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYADT+T+S++ AI ET RRR KQ+ +N+K  I P+ V ++I ++ID +
Sbjct: 568 RAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGV 627

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA  RD++  L
Sbjct: 628 YNADDARAELKEAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAAATRDQLALL 687

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 688 RERVFGANVGD 698


>gi|22537607|ref|NP_688458.1| excinuclease ABC subunit B [Streptococcus agalactiae 2603V/R]
 gi|25011573|ref|NP_735968.1| excinuclease ABC subunit B [Streptococcus agalactiae NEM316]
 gi|76797629|ref|ZP_00779899.1| excinuclease ABC, B subunit [Streptococcus agalactiae 18RS21]
 gi|77405185|ref|ZP_00782283.1| excinuclease ABC, B subunit [Streptococcus agalactiae H36B]
 gi|77414116|ref|ZP_00790283.1| excinuclease ABC, B subunit [Streptococcus agalactiae 515]
 gi|81845404|sp|Q8DYL6|UVRB_STRA5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|81845584|sp|Q8E471|UVRB_STRA3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|22534492|gb|AAN00331.1|AE014259_2 excinuclease ABC, B subunit [Streptococcus agalactiae 2603V/R]
 gi|24413112|emb|CAD47190.1| excinuclease ABC chain B [Streptococcus agalactiae NEM316]
 gi|76586990|gb|EAO63478.1| excinuclease ABC, B subunit [Streptococcus agalactiae 18RS21]
 gi|77159827|gb|EAO70971.1| excinuclease ABC, B subunit [Streptococcus agalactiae 515]
 gi|77176187|gb|EAO78958.1| excinuclease ABC, B subunit [Streptococcus agalactiae H36B]
          Length = 663

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/660 (54%), Positives = 482/660 (73%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           KD   F++ + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI  + +P
Sbjct: 5   KDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL++LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNNLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ +  VE
Sbjct: 185 QFERNDIDFQRGKFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGRVLGEVE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I+  +H++T    +  A+  I+ E++ ++   EKEG+L+EAQR+ QR  YD+EML  
Sbjct: 245 HLAIFPATHFMTNDEHMEEAISKIQAEMENQVELFEKEGKLIEAQRIRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKE 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L  YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ    +VEQIIRPTGL+
Sbjct: 365 MLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQT-DTVVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R +  Q++D+  EINL  ++G R  +T LTKRMAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN N  VI+YAD IT S+Q A+DET RRR  Q+++N+KH I PQ++K++I ++I  
Sbjct: 544 GRAARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKEIRDLIAI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               D+      +D    SLSKK+ +A +K+L++QM  AA+ L+FE AA+IRD I  LK+
Sbjct: 604 TKSNDSDKPEKVVD--YSSLSKKERQAEIKALQQQMQEAAELLDFELAAQIRDVILELKA 661


>gi|325687627|gb|EGD29648.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK72]
          Length = 662

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|322385680|ref|ZP_08059324.1| excision endonuclease subunit UvrB [Streptococcus cristatus ATCC
           51100]
 gi|321270418|gb|EFX53334.1| excision endonuclease subunit UvrB [Streptococcus cristatus ATCC
           51100]
          Length = 662

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEKEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|307706695|ref|ZP_07643501.1| excinuclease ABC, B subunit [Streptococcus mitis SK321]
 gi|307617939|gb|EFN97100.1| excinuclease ABC, B subunit [Streptococcus mitis SK321]
          Length = 662

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/655 (54%), Positives = 473/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIKQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EK+G+LLE QRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAIFEKQGKLLEVQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  I+EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TIIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|329116086|ref|ZP_08244803.1| excinuclease ABC, B subunit [Streptococcus parauberis NCFD 2020]
 gi|326906491|gb|EGE53405.1| excinuclease ABC, B subunit [Streptococcus parauberis NCFD 2020]
          Length = 663

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/657 (54%), Positives = 479/657 (72%), Gaps = 3/657 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + + Y PSGDQP AI +L+  I   EK Q+LLG TG+GKTFTM++VI  + +P +V
Sbjct: 8   KPFHLVSKYQPSGDQPQAIEELVDNIEGGEKAQILLGATGTGKTFTMSQVINRVNKPTLV 67

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++
Sbjct: 68  IAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKL 127

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  Q++
Sbjct: 128 RHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDIQFE 187

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + 
Sbjct: 188 RNDIDFQRGRFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRIREIESLTGKILGEVDHLV 247

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++  +H+VT    + T++  I+ EL+ +L   E EG+LLEAQRL+QR  YD+EML   G 
Sbjct: 248 LFPATHFVTNDEHMETSIAKIQAELEEQLKLFESEGKLLEAQRLKQRTEYDIEMLREMGY 307

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
              +ENYSR++ GR  GEPP TL ++ PED ++ +DESH+T+ QI GMY GD  RK  L 
Sbjct: 308 TNGVENYSRHMDGRAAGEPPYTLLDFFPEDFMIMIDESHMTMGQIKGMYNGDQARKKMLV 367

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ    I+EQIIRPTGL+DP 
Sbjct: 368 DYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQT-DTIIEQIIRPTGLLDPE 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VEIR +  Q++D+  EIN  A++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KT
Sbjct: 427 VEIRPSMGQMDDLLGEINTRAEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRA
Sbjct: 487 LERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN    VI+YAD +T+S++ AIDET RRR+ Q+++N +H+I P+++K++I ++I     
Sbjct: 547 ARNSEGHVIMYADKMTESMRKAIDETARRRQIQIDYNTEHDITPKTIKKEIRDLIGISKG 606

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + A     S D    +++K + K  +K L+KQMH AA+ L+FE AA+IRD +  LK+
Sbjct: 607 KGADVEETSPD--YTAMNKSERKEAIKKLQKQMHEAAEMLDFELAAQIRDIVIELKT 661


>gi|332074849|gb|EGI85321.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA41301]
          Length = 662

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL++LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNNLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+TI QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|258621836|ref|ZP_05716867.1| excinuclease ABC subunit B [Vibrio mimicus VM573]
 gi|262171967|ref|ZP_06039645.1| excinuclease ABC subunit B [Vibrio mimicus MB-451]
 gi|258586067|gb|EEW10785.1| excinuclease ABC subunit B [Vibrio mimicus VM573]
 gi|261893043|gb|EEY39029.1| excinuclease ABC subunit B [Vibrio mimicus MB-451]
          Length = 676

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/669 (54%), Positives = 478/669 (71%), Gaps = 11/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG    R++    I
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLARYTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATPG +EL +  G + +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPGEYELTKSGGEVADQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARVRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N K ILYAD+ITKS++ A+DET RRREKQ  +N++  I PQ +K  + ++++   + 
Sbjct: 545 RNINGKAILYADSITKSMRKAMDETERRREKQHAYNEQLGITPQPLKRSVKDIMELGDIA 604

Query: 740 DAATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            +                  A    L+ ++ +  +  L   M+  A NL FE AA+ RDE
Sbjct: 605 KSRKQKNSKVVPLAKVAEESATYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRDE 664

Query: 790 IKRLKSSPY 798
           I +L+    
Sbjct: 665 IHQLRQQFI 673


>gi|293365540|ref|ZP_06612249.1| excision endonuclease subunit UvrB [Streptococcus oralis ATCC
           35037]
 gi|307703497|ref|ZP_07640439.1| excinuclease ABC, B subunit [Streptococcus oralis ATCC 35037]
 gi|291315908|gb|EFE56352.1| excision endonuclease subunit UvrB [Streptococcus oralis ATCC
           35037]
 gi|307622904|gb|EFO01899.1| excinuclease ABC, B subunit [Streptococcus oralis ATCC 35037]
          Length = 662

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|222153289|ref|YP_002562466.1| excinuclease ABC subunit B [Streptococcus uberis 0140J]
 gi|254764912|sp|B9DSH1|UVRB_STRU0 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|222114102|emb|CAR42542.1| UvrABC system protein B (UvrB protein) [Streptococcus uberis 0140J]
          Length = 663

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/660 (54%), Positives = 477/660 (72%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +D   F++ + Y PSGDQP AI QL+  I   EK Q+LLG TG+GKT+TM++VI  + +P
Sbjct: 5   RDENTFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R D    RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ +   E
Sbjct: 185 QFERNDFDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKILGEAE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL+QR  YD+EML  
Sbjct: 245 HLVLFPATHFVTNDEHMEASIAKIQAELASQLKVFESEGKLLEAQRLKQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKK 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +ELEQ    IVEQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYELEQT-DTIVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R    Q++D+  EINL  ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPIVEVRPTMGQMDDLLGEINLRTERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN   +VI+YAD +T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I  
Sbjct: 544 GRAARNSQGRVIMYADKMTESMQKAIDETARRRQIQMAYNEEHGIVPQTIKKEIRDLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               +      S+D     ++K + +  +K L+KQMH AA+ L+FE AA+IRD +  LKS
Sbjct: 604 TKGTNTEVEEESLD--YSVMTKSERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLELKS 661


>gi|91775673|ref|YP_545429.1| excinuclease ABC subunit B [Methylobacillus flagellatus KT]
 gi|91709660|gb|ABE49588.1| Excinuclease ABC subunit B [Methylobacillus flagellatus KT]
          Length = 679

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/669 (54%), Positives = 490/669 (73%), Gaps = 4/669 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + +++   + P+GDQPAAI  L  G++   K Q LLGVTGSGKT+TMA VI    RPAIV
Sbjct: 8   SKYKLFQPFPPAGDQPAAIEALTAGVNEGLKFQTLLGVTGSGKTYTMANVIARTGRPAIV 67

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSIN+ I++M
Sbjct: 68  MAPNKTLAAQLYSEFKEFFPQNAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINDHIEQM 127

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V++VS IYGIG    Y  M++ + +G  + Q+++++ L+  QY+
Sbjct: 128 RLSATKALLEREDSIIVATVSAIYGIGDPGEYHGMVLHIHLGMKISQRDIVNKLIAMQYE 187

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD +++FPS   + A R+S+F ++IE I+ F PLTGQ    +   +
Sbjct: 188 RNDFDFSRGTFRVRGDVLDVFPSENSETAVRISLFDDEIENITLFDPLTGQIFNKIHNFR 247

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+ +SHYVT R     AM+ IK+EL+ R+    K G+L+EAQR+EQR  +DLEML   G 
Sbjct: 248 IFPSSHYVTAREATIRAMETIKQELRERVDFYIKTGKLVEAQRIEQRTRFDLEMLNEIGF 307

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+LTGR PG+ PPTL +Y+P+++L+ +DESHVT+PQI GMY+GD  RK  L 
Sbjct: 308 CKGIENYSRHLTGRQPGDAPPTLIDYLPKNALMIIDESHVTVPQIGGMYKGDRARKENLV 367

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS MDNRPL+FEE+  + P  I VSATP  +E    Q  IVEQ++RPTGL+DP 
Sbjct: 368 DYGFRLPSAMDNRPLKFEEFERIIPQCIFVSATPAEYEATH-QQRIVEQVVRPTGLIDPE 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + ++ A TQV+D+  EI L  + G R+L T LTKRMAEDLT+YL E  +RVRY+HS++ T
Sbjct: 427 IIVKPADTQVDDLLSEIKLRVEAGERVLATTLTKRMAEDLTDYLSEHGVRVRYLHSDIDT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQT GRA
Sbjct: 487 VERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTAGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N KVI YA+ +T+S++LA+DET RRR KQ+  N +H I P+ V ++I ++I+ +  
Sbjct: 547 ARNLNGKVIFYANKVTRSMKLAMDETQRRRAKQMAFNAEHGITPKGVNKRIKDIIEGVYS 606

Query: 739 EDAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           ++    +  +  ++ S   +++K+    +K L K MH +A NL FE+AA  RD++++LK+
Sbjct: 607 KEDHQRDRKVAEERASYAQMTEKQLVKEMKRLEKAMHESAKNLEFEKAAEYRDQLRKLKN 666

Query: 796 SPYFQGLDD 804
           + Y   + D
Sbjct: 667 NFYGAEVTD 675


>gi|329295973|ref|ZP_08253309.1| excinuclease ABC subunit B [Plautia stali symbiont]
          Length = 673

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/663 (55%), Positives = 475/663 (71%), Gaps = 8/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +VMA
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVE+FVSYYDYYQPEAYVP +DT+IEK++++NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEFFVSYYDYYQPEAYVPSSDTFIEKDAAVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+  RV +F  ++E +S F PLTGQ I  +    IY
Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDDIGLRVELFDEEVERLSLFDPLTGQVISVIPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK+EL +R   L +  +LLE QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKDELAVRRKVLLENNKLLEEQRIIQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRMRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGNYELEKSGGDVIDQVVRPTGLLDPILE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI    +   R+L+T LTKRMAEDLTEYL E   +VRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRKRVEINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           NVN + ILYAD IT S+  A+ ET RRREKQ  +N++  I PQ + +KI + ++      
Sbjct: 545 NVNGRAILYADKITPSMARAMKETERRREKQQRYNEERGIVPQGLNKKITDTLELGKNVV 604

Query: 735 --PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                 + A       +A  L+L+ +  +  +  L  QM   A NL FEEAAR+RD++  
Sbjct: 605 KTRGKGKTATRIAAEAEASYLALTPQAMQKKIHELEGQMQQHAQNLEFEEAARVRDQLHE 664

Query: 793 LKS 795
           L+ 
Sbjct: 665 LRE 667


>gi|300114475|ref|YP_003761050.1| excinuclease ABC subunit B [Nitrosococcus watsonii C-113]
 gi|299540412|gb|ADJ28729.1| excinuclease ABC, B subunit [Nitrosococcus watsonii C-113]
          Length = 701

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/668 (55%), Positives = 488/668 (73%), Gaps = 8/668 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P+GDQP AIA+L +G+ + E  Q LLGVTGSGKTFT+A +I+ +QRP IV+A
Sbjct: 5   FQLVSDYQPAGDQPKAIARLTEGLAAGEMYQTLLGVTGSGKTFTIANMIQQVQRPTIVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSE + FFPHNAV YFVSYYDYYQPEAYVP +DTYI K++S+N+ I++MR 
Sbjct: 65  PNKTLAAQLYSEMREFFPHNAVGYFVSYYDYYQPEAYVPASDTYIGKDASVNDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++ LER D IVV+SVS IYG+G  +SY  M++ L +GD+V+ + +L  L + QY+R 
Sbjct: 125 SATKAFLERPDAIVVASVSAIYGLGDKDSYLNMVLHLMVGDTVDHRGILRRLAELQYQRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGT+RV G+ I+I+P+  E  A RV +F ++IE +S F PLTG+ +  V  + +Y
Sbjct: 185 DTELRRGTYRVRGEIIDIYPAESEQEAIRVELFDDEIESLSYFDPLTGEVLHQVSRLTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  L  A+  IK EL  RL +L    +L+EAQRLEQR  +D+EM+   G C 
Sbjct: 245 PKTHYVTPREVLLQAVDEIKIELAERLEQLYGVNKLVEAQRLEQRTCFDIEMILELGYCA 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R PGE PPTLF+Y+P+++LL +DESHVT+PQ+  MYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSRRQPGEAPPTLFDYLPKNALLVIDESHVTVPQLGAMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW  L P  I VSATPG +E ++  G ++EQ++RPTGLVDP VE
Sbjct: 365 GFRLPSALDNRPLKFEEWEQLAPQIIFVSATPGPYEQQRS-GAVIEQVVRPTGLVDPAVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A +QV+D+  EI   A    R+L+TVLTKRMAEDLT+YL +  +RVRY+HS++ T+E
Sbjct: 424 VRPAGSQVDDLLSEIRQRAAANERVLVTVLTKRMAEDLTQYLEQHEVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ + ILY DT+T S+  AI ET RRR+KQL  N+ H I P+ +++ + E+ID +    
Sbjct: 544 NLHGRAILYGDTVTGSMGRAIAETERRRKKQLAFNETHRIIPRGIQKAVREIIDGVYTPS 603

Query: 741 AATTN-------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                           A+   L  ++    L+ L +QMH  A NL FE+AAR+RDEIK++
Sbjct: 604 PGKGGRHSPDQVEEKAAEYTRLPPQQLAKRLQQLERQMHKHAQNLEFEQAARLRDEIKKI 663

Query: 794 KSSPYFQG 801
           K   +  G
Sbjct: 664 KGWVFNGG 671


>gi|85058885|ref|YP_454587.1| excinuclease ABC subunit B [Sodalis glossinidius str. 'morsitans']
 gi|84779405|dbj|BAE74182.1| excision nuclease subunit B [Sodalis glossinidius str. 'morsitans']
          Length = 669

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/662 (56%), Positives = 474/662 (71%), Gaps = 4/662 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VIE + RP +V+A
Sbjct: 5   FKLVSSFEPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIEDLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  ++Y +M++ L  G  V Q+ +++ L + QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDAYLKMMLHLTRGMLVSQRSIVNRLSELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP+  ++VA RV +F +++E +S F PLTG   + V    IY
Sbjct: 185 DQAFQRCTFRVRGEVIDIFPAESDEVALRVELFDDEVERLSLFDPLTGHVDQEVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  L  AM+ IK EL  R   L   G+LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKNHYVTPRERLVQAMEDIKVELAERRESLLASGKLLEEQRLSQRTAFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  + P TI VSATPG +ELE C   I++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFAAMAPQTIYVSATPGPYELEMCGNDIIDQLVRPTGLLDPQIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI    Q   R+L+T LTKRMAEDLTEYL E   RVRY+HS+++T+E
Sbjct: 425 VRPVSTQVDDLLSEIRRRVQINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIETVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVVILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----PI 736
           N+N K ILY D IT S+  AI+ET RRREKQ  +N  + I PQ++ ++I ++++    P+
Sbjct: 545 NLNGKAILYGDKITPSMARAIEETERRREKQHAYNLANGIVPQALNKRIADIMELGQSPV 604

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +      +   A+   L+ K  +  ++ L  +M   A NL FEEAA +RD+I  L+  
Sbjct: 605 HDKHKKRKAMEAAAKYGDLTPKALEQKIRELETRMQQHAQNLEFEEAASVRDQIHALREQ 664

Query: 797 PY 798
             
Sbjct: 665 FI 666


>gi|307730290|ref|YP_003907514.1| excinuclease ABC subunit B [Burkholderia sp. CCGE1003]
 gi|307584825|gb|ADN58223.1| excinuclease ABC, B subunit [Burkholderia sp. CCGE1003]
          Length = 697

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/671 (54%), Positives = 483/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI  L++GI      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 22  EGSPFQLYQPYPPAGDQPTAIDTLVEGIEDGLSFQTLLGVTGSGKTFTMANTIARLGRPA 81

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 82  IVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 141

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 142 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDRLGQRDIIARLIAMQ 201

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RG+FRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 202 YNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKIPR 261

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK EL+ RL     EG+L+EAQRLEQR  +DLEML+  
Sbjct: 262 FTVYPSSHYVTPRDTVVRAVETIKAELRERLEFFYSEGKLVEAQRLEQRTRFDLEMLQEL 321

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+++ +DESHV I Q++GMY GD  RK  
Sbjct: 322 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDAIMLLDESHVLIGQLNGMYNGDRARKEN 381

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL+F E+       + V+ATP  +E ++  G + EQ++RPTGLVD
Sbjct: 382 LVDYGFRLPSALDNRPLKFNEFERKMRQVVFVTATPAEYE-KKTSGQVAEQLVRPTGLVD 440

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R AR+QV+DV  EIN     G R+L+TVLTKRMAE LTE+L +  I+VRY+HS++
Sbjct: 441 PEIEVRPARSQVDDVLAEINERVAAGDRVLVTVLTKRMAEQLTEFLADHGIKVRYLHSDI 500

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 501 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 560

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYAD +T S++ AIDET RRR KQ+  N +H I P+ V ++I ++ID +
Sbjct: 561 RAARNVNGKAILYADKVTDSMRRAIDETERRRAKQIAFNLEHGITPRGVVKRIRDIIDGV 620

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    LK L KQM   A NL FE+AA+ RD++  L
Sbjct: 621 YNVDDARAELKEQQTRAKFEDMSEKQLAKELKRLEKQMMEHAKNLEFEKAAQTRDQLALL 680

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 681 RQRVFGANVGD 691


>gi|302877894|ref|YP_003846458.1| excinuclease ABC, B subunit [Gallionella capsiferriformans ES-2]
 gi|302580683|gb|ADL54694.1| excinuclease ABC, B subunit [Gallionella capsiferriformans ES-2]
          Length = 691

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/667 (54%), Positives = 485/667 (72%), Gaps = 4/667 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + +++   + P+GDQP AI QL++GI+     Q LLGVTGSGKT+TMA VI    RPA+V
Sbjct: 26  SPYRLHQPFEPAGDQPTAIEQLVEGINDGLAFQTLLGVTGSGKTYTMANVIARCGRPAMV 85

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLYSE ++FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INEQI++M
Sbjct: 86  MAPNKTLAAQLYSELRDFFPENAVEYFVSYYDYYQPEAYVPSRDVFIEKDSAINEQIEQM 145

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER DCI+V++VS IYGIG    Y  MI+ L+  + + Q+E++  L++ QY+
Sbjct: 146 RLSATKALLEREDCIIVATVSAIYGIGDPVDYHGMILHLRNNEKMHQREVIKRLIEMQYE 205

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG FRV GD I++FP+   + A R+++F +++E +S F PLTG   + V    
Sbjct: 206 RNDVDFTRGRFRVRGDVIDVFPAESSEQALRITLFDDEVETLSLFDPLTGHIQQKVPRYT 265

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +SHYVTPR T+  A++ IK EL  R+     E +L+EAQR+EQR  +DLEML   G 
Sbjct: 266 VYPSSHYVTPRATVLQAIETIKVELAERIKYFVGENKLVEAQRIEQRTRHDLEMLTEIGF 325

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
            + IENYSR+L+GRNPG+PPPTL +Y+P ++L+F+DESHV IPQ+  MY+GD  RK  L 
Sbjct: 326 TKGIENYSRHLSGRNPGDPPPTLLDYLPPNALMFLDESHVMIPQVGAMYKGDRARKENLV 385

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            YGFRLPS MDNRPLRF+E+  +   ++ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 386 VYGFRLPSAMDNRPLRFDEFEHIMRQSVFVSATPSVYEAEHA-GQVVEQVVRPTGLVDPI 444

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R A  QV+D+  EI L  + G R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 445 ILVRPAINQVDDLMSEIRLRIKVGERVLVTTLTKRMSEDLTEYLSEHGVKVRYLHSDIDT 504

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 505 VERVEIIRDLRLGEFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 564

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           AR+++   ILYAD IT S++ A+DET RRR KQ+ HN +H I PQ V+++I ++I+    
Sbjct: 565 ARHLHGTAILYADRITDSMRRAMDETERRRTKQVAHNLEHGITPQGVQKRIKDIIEGTYE 624

Query: 739 EDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            D A  N       A+ L++S+ +    +  L K+M  AA NL FE+A  +RD++K+L+ 
Sbjct: 625 LDDARLNQKAAQEQAKYLAMSRAQVTKEINRLEKEMLAAAKNLEFEKATTLRDQLKKLRD 684

Query: 796 SPYFQGL 802
           +     L
Sbjct: 685 NVLLSTL 691


>gi|237707263|ref|ZP_04537744.1| excision nuclease subunit B [Escherichia sp. 3_2_53FAA]
 gi|226898473|gb|EEH84732.1| excision nuclease subunit B [Escherichia sp. 3_2_53FAA]
          Length = 673

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 477/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGELIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|84516968|ref|ZP_01004325.1| UvrABC system protein B [Loktanella vestfoldensis SKA53]
 gi|84509086|gb|EAQ05546.1| UvrABC system protein B [Loktanella vestfoldensis SKA53]
          Length = 748

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/680 (61%), Positives = 531/680 (78%), Gaps = 3/680 (0%)

Query: 118 KNGKIWTPHRSWSINNHSK--DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
           K+  ++  + +  + +  K      F ++T++ P+GDQP AIA+L  GI + E+ Q+LLG
Sbjct: 23  KSPPVYLANPAPDVKSREKMEGGRRFVLKTEFEPAGDQPTAIAELSAGILAGERDQVLLG 82

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GKTFTMAK+IE  QRPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPE
Sbjct: 83  ATGTGKTFTMAKMIEQTQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPE 142

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AYV R+DTYIEKES INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y  M  
Sbjct: 143 AYVARSDTYIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYGAMTQ 202

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +  G S +Q+++++ L+ QQY+R D    RGTFRV GDS+E++P+HL+D AW++S FG 
Sbjct: 203 DIHAGQSYDQRQIIADLIAQQYRRNDQAFQRGTFRVRGDSLEVWPAHLDDRAWKLSFFGE 262

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           ++E I+EF PLTG K    + ++IYANSHYVTP+PT+  A+  IK+EL+MRL +L  EG+
Sbjct: 263 ELESITEFDPLTGTKTGTFDKVRIYANSHYVTPKPTMQQAVIGIKKELRMRLDQLVAEGK 322

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRLEQR  +DLEMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DE
Sbjct: 323 LLEAQRLEQRTNFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADE 382

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHV++PQI GMY+GDF RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +W
Sbjct: 383 SHVSVPQIGGMYKGDFRRKMTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAW 442

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           E+EQ  G+  EQIIRPTGL+DP +EIR   TQV+D+ DE+   A  G R L+T LTKRM+
Sbjct: 443 EMEQTGGVFTEQIIRPTGLIDPMIEIRPVETQVDDLLDEVRKVAAAGYRTLVTTLTKRMS 502

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLTEY++E+ IRVRYMHS++ T+ERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVA
Sbjct: 503 EDLTEYMHEQGIRVRYMHSDIDTIERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVA 562

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS+TSL+QTIGRAARN   +VI+YAD IT S++ A+ ET RRR KQL +N
Sbjct: 563 ILDADKEGFLRSETSLVQTIGRAARNAEGRVIMYADRITGSMERAMGETERRRTKQLAYN 622

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAA 775
           +KH I P +VK+ + +++  +   D     ++    +   +    K  +  +R  M  AA
Sbjct: 623 EKHGITPTTVKKNVEDILAGLYKGDVDMNRVTAKIDK-GRAGGNIKTVIDGIRTDMRKAA 681

Query: 776 DNLNFEEAARIRDEIKRLKS 795
           +NL FEEAAR+RDE+KRL++
Sbjct: 682 ENLEFEEAARLRDELKRLEA 701


>gi|86157701|ref|YP_464486.1| excinuclease ABC subunit B [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774212|gb|ABC81049.1| Excinuclease ABC subunit B [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 699

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/655 (55%), Positives = 478/655 (72%), Gaps = 1/655 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++Q++Y P+GDQP AIA+L  G+   E+ Q+LLGVTGSGKTFT+A V+  ++RP +V+
Sbjct: 2   PFEIQSEYQPTGDQPRAIAELTDGLRRGERHQVLLGVTGSGKTFTVANVVAEVKRPTLVI 61

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQLY+EFK  FP  AV YFVSYYDYYQPEAYVP TDTYIEK+SSIN++IDRMR
Sbjct: 62  AHNKTLAAQLYAEFKELFPTAAVHYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDRMR 121

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT +LL RND ++V+SVSCIYG+G+ E+Y  ++ +L+ G    +   + SL+  QY+R
Sbjct: 122 HAATHALLTRNDVLIVASVSCIYGLGTAEAYHGLLQRLERGQEFLRDRFIRSLIDIQYER 181

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+   RGTFRV GD+IE+FP + ED A R+  FG+ +E I EF PL G  +  ++ + I
Sbjct: 182 NDLDFHRGTFRVRGDTIEVFPPYEEDRAVRIEFFGDVVESIHEFDPLRGVTLAELDKVAI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           + NSHYV+       A+  ++EEL+ RL EL+   +L+EAQRLEQR  +DLEMLE  G C
Sbjct: 242 FPNSHYVSAPEVRARAISGVREELRERLGELKAANKLVEAQRLEQRTMFDLEMLEQMGFC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+GR  G+PPP L +Y P+D LL +DESH T+PQI  MYRGD  RK TL E
Sbjct: 302 PGIENYSRWLSGRKAGDPPPCLLDYFPKDFLLVIDESHQTVPQIGSMYRGDRSRKETLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+  L    + VSATP ++ELEQ QG++VEQ+IRPTGLVDP +
Sbjct: 362 FGFRLPSALDNRPLKFEEFQALVKQAVYVSATPAAYELEQAQGVVVEQLIRPTGLVDPQI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   +QV+D+  E+   A+ G R+L+T LTKRMAEDLTEY  +  +R RY+HS++ TL
Sbjct: 422 EVRPVGSQVDDLLGEVRKRAEAGERVLVTTLTKRMAEDLTEYFTDVGVRCRYLHSDIDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  +IRDLR G+FDVL+GINLLREGLDIPE  LVA+LDADKEGFLRS  SLIQTIGRAA
Sbjct: 482 ERSAVIRDLRRGEFDVLIGINLLREGLDIPEVSLVAVLDADKEGFLRSSVSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN +V+LYAD IT S++ AIDETTRRRE Q  +N +H I P +VK  I ++   ++  
Sbjct: 542 RNVNGRVLLYADAITASMRQAIDETTRRREIQERYNAEHGITPTTVKRNISDLGMAVVEA 601

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           D  T  ++ +        ++    + +L ++M  AA  L FE+AA++RD ++ LK
Sbjct: 602 DYVTVPLAAEEGAEYR-PEQLPEIVAALEREMQDAARALEFEKAAQLRDRVQALK 655


>gi|332362131|gb|EGJ39933.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK49]
          Length = 662

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEKEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADTIT+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTITQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|312863813|ref|ZP_07724051.1| excinuclease ABC, B subunit [Streptococcus vestibularis F0396]
 gi|311101349|gb|EFQ59554.1| excinuclease ABC, B subunit [Streptococcus vestibularis F0396]
          Length = 663

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/660 (53%), Positives = 481/660 (72%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K+   F + + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI+ + +P
Sbjct: 5   KEDNQFHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIQRVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYD+YQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT +LLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  
Sbjct: 125 DKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE
Sbjct: 185 QFERNDIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRICEIESLTGRNLGEVE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H++T    +  A+K I EE++ ++ + E EG+L+EAQR+ QR  YD+EML  
Sbjct: 245 HLVLFPATHFMTNEEHMEEAIKNIMEEMEAQVKQFEAEGKLIEAQRIRQRTEYDVEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR  GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKK 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +VEQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R    Q++D+  EIN   ++G R+ +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPIMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN    VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I  
Sbjct: 544 GRAARNSEGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               +A     +++    +++KK+ +  +K L+KQMH AA+ L+FE AA+IRD +  LKS
Sbjct: 604 TKANEAEVAEDTVN--YSAMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDMVLELKS 661


>gi|261211944|ref|ZP_05926230.1| excinuclease ABC subunit B [Vibrio sp. RC341]
 gi|260838552|gb|EEX65203.1| excinuclease ABC subunit B [Vibrio sp. RC341]
          Length = 676

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/669 (54%), Positives = 479/669 (71%), Gaps = 11/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ S    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLDSGLAHQTLLGVTGSGKTFTLANVIATAQRPTILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG    R++    +
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVVTSRDLARFTV 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKHELQIRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ G+PPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRSEGQPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATPG +EL +  G + +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPGEYELTKSGGEVADQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARVRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N K ILYAD+ITKS++ A+DET RRREKQ  +N++  I PQ +K  + ++++   + 
Sbjct: 545 RNINGKAILYADSITKSMRKAMDETERRREKQHAYNEQLGITPQPLKRSVKDIMELGDIA 604

Query: 740 DAATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            +                  A   +L+ ++ +  +  L   M+  A NL FE AA+ RDE
Sbjct: 605 KSRKPKNSKVVPLAKVAEESAVYQALTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRDE 664

Query: 790 IKRLKSSPY 798
           I +L+    
Sbjct: 665 IHQLRQQFI 673


>gi|296164512|ref|ZP_06847083.1| excision endonuclease subunit UvrB [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295900112|gb|EFG79547.1| excision endonuclease subunit UvrB [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 743

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/738 (49%), Positives = 485/738 (65%), Gaps = 32/738 (4%)

Query: 95  SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQP 154
             +  T  V A  R+            +       +++   +    F++ + + P+GDQP
Sbjct: 8   PGRGATTLVGA--RIYPGGMAFATEHPVVAHSEYRAVDEVVRVGGRFEVVSPHAPAGDQP 65

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           AAI +L + I + E+  +LLG TG+GK+ T A +IE +QRP +VMAPNK LAAQL +E +
Sbjct: 66  AAIDELERRIRAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMAPNKTLAAQLANELR 125

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
              PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RHSAT SLL R D +V
Sbjct: 126 EMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRHSATSSLLSRRDVVV 185

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           V+SVSCIYG+G+ +SY    V+L +G  V +  LL  LV  QY R D+   RG+FRV GD
Sbjct: 186 VASVSCIYGLGTPQSYLDRSVELSVGTEVPRDALLRLLVDVQYTRNDLSFTRGSFRVRGD 245

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
           ++EI PS+ E++A R+  FG+++E +   +PLTG  IR V++++I+  +HYV     +  
Sbjct: 246 TVEIIPSY-EELAVRIEFFGDEVEALYYLHPLTGDVIRQVDSLRIFPATHYVAGPERMAH 304

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C  IENYSR++ GR P
Sbjct: 305 AISTIEEELAARLAELEGQGKLLEAQRLRMRTNYDIEMMRQVGFCSGIENYSRHIDGRGP 364

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
           G PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EYGFRLPS  DNRPL 
Sbjct: 365 GSPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEYGFRLPSACDNRPLT 424

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V ++  + Q++D+  E
Sbjct: 425 WEEFADRIGQTVYLSATPGPYELSQAGGEFVEQVIRPTGLVDPKVVVKPTKGQIDDLIGE 484

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I        R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL R+E++R LRLG +D
Sbjct: 485 IRKRTDADERVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLRRVELLRQLRLGDYD 544

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAARNV+ +V +YAD+IT
Sbjct: 545 VLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAARNVSGEVHMYADSIT 604

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA---- 750
            S++ AIDET RRR KQ+ +N+ H I+PQ +++KI +++D +  E   T  + +      
Sbjct: 605 DSMKEAIDETERRRAKQIAYNEAHGIDPQPLRKKIADILDQVYREADDTETVGVGGSGRN 664

Query: 751 -----------------------QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                                     S+ + +    +K L +QM  AA +L FE AAR R
Sbjct: 665 ASRGRRAQGEPGRAVSAGVFEGRDTASMPRAELADLIKDLTEQMMAAARDLQFELAARFR 724

Query: 788 DEIKRLKSSPYFQGLDDS 805
           DEI  LK     +G+D +
Sbjct: 725 DEIADLKKE--LRGMDAA 740


>gi|327481721|gb|AEA85031.1| excinuclease ABC subunit B [Pseudomonas stutzeri DSM 4166]
          Length = 671

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/667 (55%), Positives = 488/667 (73%), Gaps = 10/667 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ T + P+GDQP AI Q+++GI +    Q LLGVTGSGKTF++A VI  +QRP +
Sbjct: 1   MSKFELVTRFKPAGDQPEAIRQMIEGIEAGLSHQTLLGVTGSGKTFSIANVIAHVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+G  +SY +M++ +  GD ++Q+ELL  L   QY
Sbjct: 121 MRLSATKALLERPDAIIVTTVSCIYGLGDPQSYLKMVLHVDRGDRLDQRELLRRLTGLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+IFP+  +  A R+ +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIFPAESDLEAVRIELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A++ IK+EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLLDAVEKIKDELRERLDYLRSQNKLVEAQRLEQRTRFDLEMIMELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR+ GEPPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRDAGEPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG +E E   G +VEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEAICPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R A TQV+D+  EI     +  R+L+T LTKRM+EDLT+YL + +++VRY+HS++ 
Sbjct: 420 QIEVRPALTQVDDLLSEIRKCVAKEERVLVTTLTKRMSEDLTDYLGDHDVKVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S+Q AIDET RRR KQ+  N+ H I P+ VK+ + ++++   
Sbjct: 540 AARNLNGRAILYADNITGSMQRAIDETERRRAKQIAFNEAHGIVPKGVKKDVQDILEGAT 599

Query: 738 L---------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +          +A     S   +    S  +    ++ L ++M L A +L FE AA  RD
Sbjct: 600 VPGSRSKKRRGEAKAAEESARYESELRSPSEITKRIRQLEEKMLLLARDLEFEAAAEARD 659

Query: 789 EIKRLKS 795
           EI +L+ 
Sbjct: 660 EIHKLRE 666


>gi|33152480|ref|NP_873833.1| excinuclease ABC subunit B [Haemophilus ducreyi 35000HP]
 gi|71153393|sp|Q7VLL3|UVRB_HAEDU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|33148703|gb|AAP96222.1| excinuclease ABC subunit B [Haemophilus ducreyi 35000HP]
          Length = 675

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/668 (55%), Positives = 485/668 (72%), Gaps = 8/668 (1%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           SK    F + + + PSGDQP+AI +L +G+      Q LLGVTGSGKTFT+A VI  + R
Sbjct: 2   SKPGKPFILNSPFAPSGDQPSAIKKLTEGLQDGLAHQTLLGVTGSGKTFTIANVIAQLNR 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PA+++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINEQ
Sbjct: 62  PAMLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQ 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT+S LER D IVV+SVS IYG+G V +Y QM++ L++G  + Q+++L+ L +
Sbjct: 122 IEQMRLSATKSFLERRDTIVVASVSAIYGLGDVNAYMQMMLHLQVGAIINQRDILARLAE 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    R TFRV G+ I+IFP+  +++A R+ +F ++I+ +S F PLTG     +
Sbjct: 182 LQYTRNDQAFQRSTFRVRGEVIDIFPAESDEIALRIELFDDEIDNLSLFDPLTGHSFGKI 241

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               IY  +HYVTPR  + TA+  IK EL  R     KE +LLE QR+ QR  +D+EM+ 
Sbjct: 242 PRYTIYPKTHYVTPRERILTAIDQIKNELTGRQDYFIKEHKLLEEQRITQRTQFDIEMIN 301

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK
Sbjct: 302 ELGYCSGIENYSRYLSGRQEGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARK 361

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G I++Q++RPTGL
Sbjct: 362 ETLVQYGFRLPSALDNRPLKFEEFERLSPQTIYVSATPGNYELEKSNGDIIDQVVRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+R   +QV+DV  EI        R+L+T LTK+MAEDLT+YL E  +RVRY+HS
Sbjct: 422 LDPIIEVRPVASQVDDVLSEIQQRVALDERVLITTLTKKMAEDLTDYLDEHGVRVRYLHS 481

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EII DLR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS++SLIQT
Sbjct: 482 DIDTVERVEIIHDLRIGMFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSESSLIQT 541

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN+N K ILYAD IT S+Q AI ET RRREKQ ++N++HNI PQ++ +K+ E++D
Sbjct: 542 IGRAARNLNGKAILYADRITHSMQKAITETERRREKQQKYNQEHNIIPQALNKKVRELLD 601

Query: 735 PILLEDAATTNISIDAQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
               +       ++   + S         S++  +  LK L +QM   A +L FE+AA +
Sbjct: 602 IGQTDKQKKGKQAVKIAEQSASYTPNAPKSRQALEKELKQLTQQMQKLAKDLEFEKAAAV 661

Query: 787 RDEIKRLK 794
           RD+I +LK
Sbjct: 662 RDKIGQLK 669


>gi|161524243|ref|YP_001579255.1| excinuclease ABC subunit B [Burkholderia multivorans ATCC 17616]
 gi|160341672|gb|ABX14758.1| excinuclease ABC, B subunit [Burkholderia multivorans ATCC 17616]
          Length = 732

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/671 (54%), Positives = 485/671 (72%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 57  EGSPFQLYQPYPPAGDQPTAIDTLVEGVQDGLAFQTLLGVTGSGKTFTMANTIARLGRPA 116

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 117 IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 176

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 177 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQRDVIARLIAMQ 236

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 237 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKIPR 296

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IKEEL+ RL    +EG+L+EAQRLEQR  +DLEML+  
Sbjct: 297 FTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHREGKLVEAQRLEQRTRFDLEMLQEL 356

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 357 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 416

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ++RPTGLVD
Sbjct: 417 LVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSATPADYE-QRVTGQIAEQVVRPTGLVD 475

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A +QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  I+VRY+HS++
Sbjct: 476 PEIEVRPASSQVDDVLTEINARVKAGERVLITVLTKRMAEQLTEFLADHGIKVRYLHSDI 535

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 536 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 595

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYADT+T+S++ AI ET RRR KQ+ +N+K  I P+ V ++I ++ID +
Sbjct: 596 RAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGV 655

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA  RD++  L
Sbjct: 656 YNADDARAELKEAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAAATRDQLALL 715

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 716 RERVFGANVGD 726


>gi|307130551|ref|YP_003882567.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Dickeya dadantii 3937]
 gi|306528080|gb|ADM98010.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Dickeya dadantii 3937]
          Length = 670

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/663 (56%), Positives = 473/663 (71%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHSDFKPAGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ED+A RV +F  ++E +S F PLTG  ++ V    IY
Sbjct: 185 DQAFSRGTFRVRGEIIDIFPAESEDIALRVELFDEEVERLSLFDPLTGHIVQTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR T+DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKVELAERRQVLLAGNKLLEEQRLAQRTTFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVTIPQ+ GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P  I VSATPG++ELE+  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQAIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPELE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVTTQVDDLLSEIRKRAVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD IT S++ A++ET RRREKQ  +N++H I PQ + +KI +++      +
Sbjct: 545 NLNGKAILYADKITPSMERAMNETQRRREKQQAYNEQHGIVPQGLNKKIGDILQIGQSAN 604

Query: 741 A-----ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                         A    LS K     ++ L  QM   A NL FEEAAR+RDEI  L+ 
Sbjct: 605 GRGKGRGKKAAEPAAHYQQLSPKALDQKIRELESQMLAHAQNLEFEEAARLRDEIHALRE 664

Query: 796 SPY 798
              
Sbjct: 665 QFI 667


>gi|225870778|ref|YP_002746725.1| UvrABC system protein B (UvrB protein) [Streptococcus equi subsp.
           equi 4047]
 gi|254764909|sp|C0MBD7|UVRB_STRE4 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|225700182|emb|CAW94344.1| UvrABC system protein B (UvrB protein) [Streptococcus equi subsp.
           equi 4047]
          Length = 663

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/660 (53%), Positives = 475/660 (71%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +D   F++ + Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P
Sbjct: 5   RDFKAFKLVSKYAPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVVAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL++LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNALVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ + + +
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKVLGDAD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML  
Sbjct: 245 HLVLFPATHFVTNDEHMEQSISKIQAELADQLKLFEAEGKLLEAQRLRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRSAGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDKARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ    IVEQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQT-DTIVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R +  Q++D+  EINL  ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRVERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN +  VI+YAD +T S+Q AIDET RRR  Q+ +N++H I PQ++K+ I ++I  
Sbjct: 544 GRAARNADGHVIMYADRMTDSMQRAIDETARRRAIQMAYNEEHGIIPQTIKKDIRDLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               +A  T    +    S+++ + +  +K L+K M  AA+ L+FE AA++RD I  LK+
Sbjct: 604 SRAVEAKATE--AETNYESMTRSERQEAIKQLQKNMQEAAELLDFELAAQLRDLILELKA 661


>gi|294676922|ref|YP_003577537.1| UvrABC system protein B [Rhodobacter capsulatus SB 1003]
 gi|294475742|gb|ADE85130.1| UvrABC system protein B [Rhodobacter capsulatus SB 1003]
          Length = 727

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/662 (64%), Positives = 527/662 (79%), Gaps = 1/662 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +    F M++++ P+GDQP AIA++ K + + E+ Q+LLG TG+GKT+TMAKVIEA Q
Sbjct: 20  KLEGGKRFVMKSEFSPAGDQPTAIAEISKAVLAGERDQVLLGATGTGKTYTMAKVIEATQ 79

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV RTDTYIEKES INE
Sbjct: 80  RPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARTDTYIEKESMINE 139

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           QIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+YS M   L +G   E ++ L+ LV
Sbjct: 140 QIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDLSVGGLYESRKFLADLV 199

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
            QQYKR D    RG+FRV GD+++++P+HLED AWR S FG ++E I EF PLTG +  +
Sbjct: 200 AQQYKRLDAAFQRGSFRVKGDTVDLWPAHLEDRAWRFSFFGEELEAIIEFDPLTGARTDS 259

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            + I+IYANSHYVT RPTL  A K I+ EL  RL +L  EG+LLEAQRLEQR  +DLEML
Sbjct: 260 FQQIRIYANSHYVTRRPTLQQATKSIRIELAQRLKQLHDEGKLLEAQRLEQRTNFDLEML 319

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           E TG C  IENYSRYLTGR PGEPPPTLFE+IP+ +++F DESHVT+PQI GMYRGD+ R
Sbjct: 320 EATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDTAIVFADESHVTVPQIGGMYRGDYRR 379

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WELEQ  G+  EQ+IRPTG
Sbjct: 380 KFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAPWELEQTGGVFTEQVIRPTG 439

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VEIR   TQV+D+ DEI   A +GLR+L+T LTKRMAEDLTEYL+E+ IRVRYMH
Sbjct: 440 LLDPEVEIRPVETQVDDLLDEIRKVAARGLRVLVTTLTKRMAEDLTEYLHEQGIRVRYMH 499

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ T+ERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQ
Sbjct: 500 SDIDTIERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQ 559

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAARN + +VI+YAD IT S+Q A++ET RRREKQ+ +N +H I PQ+V++ + +V+
Sbjct: 560 TIGRAARNADGRVIMYADRITGSMQRALNETNRRREKQIAYNLEHGITPQTVRKNVEDVL 619

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             +   D     ++   +  ++      AHL++LR +M  AA+NL FEEAAR+RDE+KRL
Sbjct: 620 AGLWAGDTDMARVTAKVEGPAV-GSNLAAHLEALRTKMRKAAENLEFEEAARLRDEVKRL 678

Query: 794 KS 795
           ++
Sbjct: 679 EA 680


>gi|330899139|gb|EGH30558.1| excinuclease ABC subunit B [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 673

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/670 (55%), Positives = 486/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +
Sbjct: 1   MSEFQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+I+P+  +  A R+ +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLIEAMENIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G IVEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR A TQV+D+  EI+  A    R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ 
Sbjct: 420 QIEIRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S++ AI ET RRREKQ+  N +H I P+ V + + ++++   
Sbjct: 540 AARNLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGAT 599

Query: 738 LEDAATTNISIDAQQLS---------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  + +      A+             S  +    ++ L ++M+  A +L FE AA++RD
Sbjct: 600 VPGSRSKKRKGMAKAAEENARYENELRSPSEINKRIRQLEEKMYQLARDLEFEAAAQMRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EIGKLRERLL 669


>gi|329904108|ref|ZP_08273674.1| Excinuclease ABC subunit B [Oxalobacteraceae bacterium IMCC9480]
 gi|327548130|gb|EGF32846.1| Excinuclease ABC subunit B [Oxalobacteraceae bacterium IMCC9480]
          Length = 697

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/670 (54%), Positives = 486/670 (72%), Gaps = 4/670 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+   + P+GDQP AIA+L++GI      Q LLGVTGSGKT+TMA VI  M RPAI+
Sbjct: 22  SPFQLLQPFEPAGDQPTAIAKLVEGIEDGLSYQTLLGVTGSGKTYTMANVIARMGRPAII 81

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I++M
Sbjct: 82  FAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQM 141

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R S T+SL+ER D I+V++VS IYGIG+   Y QMI+ L+  D V Q+++++ L++ QY 
Sbjct: 142 RLSCTKSLMERRDVIIVATVSAIYGIGNPNEYHQMILTLRAKDKVSQRDVIARLIQMQYT 201

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +I   RGTFRV GD+I+IFP+   ++A R+ MF ++IE I  F PLTG+  + +    
Sbjct: 202 RNEIDFGRGTFRVRGDTIDIFPAEHAELAVRLEMFDDEIESIQLFDPLTGRVRQKIPRFT 261

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYVTPR T+  A++ IKEEL+ RL    KE +L+E QR+EQR  +DLEM++  G 
Sbjct: 262 VYPGSHYVTPRATVLRAIETIKEELRDRLEFFRKENKLIEEQRIEQRTRFDLEMMQEIGF 321

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
            + IENYSR+L+G   GEPPPTL +Y+P D+L+F+DESHV + Q+SGMY GD  RK  L 
Sbjct: 322 TKGIENYSRHLSGAKAGEPPPTLIDYLPPDALMFLDESHVLLGQLSGMYNGDRSRKTNLV 381

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPLRF+E+      T+ VSATP  +E     G +VEQ++RPTGLVDP 
Sbjct: 382 DYGFRLPSALDNRPLRFDEFEGKMRQTVFVSATPAEYEKTHA-GQVVEQVVRPTGLVDPA 440

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R A TQV+D+  EI L   Q  R+L+T LTKRM+E LTE+L +  ++VRY+HS++ T
Sbjct: 441 IEVRPASTQVDDLMGEIQLRVAQNERVLVTTLTKRMSEQLTEFLSDNGVKVRYLHSDIDT 500

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EI+RDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 501 VERVEILRDLRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRA 560

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N K ILY D +T S++ AIDET RRR KQ+E N  +NI P  +K++I ++ID +  
Sbjct: 561 ARNLNGKAILYGDKVTDSMRRAIDETERRRNKQVEFNLANNITPIGIKKQIKDLIDGVYS 620

Query: 739 EDAATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              A   + +    A+  S+S+K+    +K L K M   A NL FE+AA++RD+++ LK 
Sbjct: 621 PQEAREELQVAQETAKYESMSEKQISKEIKRLEKLMLDHAKNLEFEKAAQVRDQLRILKE 680

Query: 796 SPYFQGLDDS 805
             +  G  D+
Sbjct: 681 QLFGAGGSDN 690


>gi|254515031|ref|ZP_05127092.1| excinuclease ABC, B subunit [gamma proteobacterium NOR5-3]
 gi|219677274|gb|EED33639.1| excinuclease ABC, B subunit [gamma proteobacterium NOR5-3]
          Length = 672

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/670 (55%), Positives = 483/670 (72%), Gaps = 10/670 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + P+GDQP AI  L++GIH+    Q LLGVTGSGKTFTMA VIE +QRP IV
Sbjct: 3   KPFKVNSPFKPAGDQPMAIKALVEGIHAGLAAQTLLGVTGSGKTFTMAHVIEQLQRPTIV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY EFK FFP NAVEYFVSYYDY+QPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  MAHNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYFQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER DCIVV++VS IYG+G  +SY +M++ +  G+ ++Q++LL  L + QY 
Sbjct: 123 RLSATKALLERKDCIVVATVSAIYGLGDPKSYFKMVMHVSRGEIIDQRQLLRHLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RGT+RV GD I++FP+  E  A R+ +F  ++E IS F PLTG  I  V  I 
Sbjct: 183 RNDIDFSRGTYRVRGDVIDVFPAEAEAEAVRIELFDEEVENISLFDPLTGVIIAKVPRIT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVT R T+  A+++I+ EL+ R+ +L+   +L+EAQRL QR  YD+EM+   G 
Sbjct: 243 IYPKTHYVTSRDTMLNAIEHIEVELEERVKQLKSVEKLVEAQRLSQRTRYDIEMIRELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           CQ +ENYSRYL+GR PGE PPTL+EY+P+D+L+ +DESH +IPQI  MY+GD  RK TL 
Sbjct: 303 CQGVENYSRYLSGRGPGEAPPTLYEYLPDDALVIIDESHASIPQIGAMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPLRFEEW  L P  + VSATPG +E E   G +VEQ++RPTGL DP 
Sbjct: 363 EYGFRLPSALDNRPLRFEEWENLLPQAVFVSATPGPYEAEHA-GQVVEQVVRPTGLTDPE 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR A TQV+++  EI+   + G R+L+T LTKRM+EDLTEYL E ++RVRY+HS++ T
Sbjct: 422 IEIRPATTQVDNLLGEIHKTVEMGDRVLVTTLTKRMSEDLTEYLAEHDVRVRYLHSDIDT 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR 
Sbjct: 482 VERVEIIRDLRLGHFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSDRSLIQTIGRG 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--- 735
           ARN+  + ILYAD IT S+Q AIDET RRR+KQ+  N+ +NI P  V + + ++++    
Sbjct: 542 ARNLRGRAILYADKITGSMQRAIDETDRRRKKQVAFNEANNITPVGVIKSVQDIMEGARR 601

Query: 736 ------ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                    +  A   ++   + L LS       L  +  QMH  A NL FE+AA +RD+
Sbjct: 602 MPTKAKSKGQKVAEETLAFSQELLKLSPTALARRLDKMESQMHEHAKNLEFEQAAALRDQ 661

Query: 790 IKRLKSSPYF 799
           +  +K   + 
Sbjct: 662 LTEIKQQAFI 671


>gi|26246750|ref|NP_752790.1| excinuclease ABC subunit B [Escherichia coli CFT073]
 gi|31563263|sp|Q8FJP8|UVRB_ECOL6 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|26107149|gb|AAN79333.1|AE016757_237 Excinuclease ABC subunit B [Escherichia coli CFT073]
          Length = 673

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/665 (55%), Positives = 477/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVXLFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +L+E QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLMEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|134296394|ref|YP_001120129.1| excinuclease ABC subunit B [Burkholderia vietnamiensis G4]
 gi|14572552|gb|AAK64610.1| excinuclease ABC subunit B [Burkholderia cepacia]
 gi|134139551|gb|ABO55294.1| Excinuclease ABC subunit B [Burkholderia vietnamiensis G4]
          Length = 697

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/671 (54%), Positives = 484/671 (72%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI  L++G+H     Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 21  EGSPFQLYQPYPPAGDQPTAIETLVEGVHDGLSFQTLLGVTGSGKTFTMANTIARLGRPA 80

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 81  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 140

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 141 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQRDVIARLIAMQ 200

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 201 YSRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKIPR 260

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK+EL+ RL    +EG+L+EAQRLEQR  +DLEML+  
Sbjct: 261 FTVYPSSHYVTPRDTVMRAIETIKDELRERLEFFHREGKLVEAQRLEQRTRFDLEMLQEL 320

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 321 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 380

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ++RPTGLVD
Sbjct: 381 LVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-QRVTGQIAEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A +QV+DV  EIN     G R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 440 PEIEVRPASSQVDDVLTEINARVSAGERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYAD +T+S++ AI ET RRR KQ+ HN+K  I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGKAILYADNMTESMKRAIGETERRRAKQIAHNEKMGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA  RD++  L
Sbjct: 620 YNADDARAELKEAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAAATRDQLALL 679

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 680 RERVFGANVGD 690


>gi|237730756|ref|ZP_04561237.1| excinuclease ABC subunit B [Citrobacter sp. 30_2]
 gi|226906295|gb|EEH92213.1| excinuclease ABC subunit B [Citrobacter sp. 30_2]
          Length = 673

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/665 (55%), Positives = 473/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTISRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKVELAERRKVLLANNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDDVVDQVVRPTGLLDPV 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRTRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----- 733
           ARN+N K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++     
Sbjct: 543 ARNINGKAILYGDKITASMAKAIGETERRREKQQLYNEEHGITPQGLNKKVVDILALGQN 602

Query: 734 ---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                   +  +      +  +L ++ K  +  +  L  QM   A NL FEEAA IRD++
Sbjct: 603 IAKTKAKGKGKSRAGAKSEVVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAATIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|221214866|ref|ZP_03587835.1| excinuclease ABC, B subunit [Burkholderia multivorans CGD1]
 gi|221165405|gb|EED97882.1| excinuclease ABC, B subunit [Burkholderia multivorans CGD1]
          Length = 696

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/671 (54%), Positives = 485/671 (72%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 21  EGSPFQLYQPYPPAGDQPTAIDTLVEGVQDGLAFQTLLGVTGSGKTFTMANTIARLGRPA 80

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 81  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 140

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 141 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQRDVIARLIAMQ 200

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 201 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKIPR 260

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IKEEL+ RL    +EG+L+EAQRLEQR  +DLEML+  
Sbjct: 261 FTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHREGKLVEAQRLEQRTRFDLEMLQEL 320

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 321 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 380

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ++RPTGLVD
Sbjct: 381 LVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSATPADYE-QRVTGQIAEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A +QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  I+VRY+HS++
Sbjct: 440 PEIEVRPASSQVDDVLTEINARVKAGERVLITVLTKRMAEQLTEFLADHGIKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYADT+T+S++ AI ET RRR KQ+ +N+K  I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA  RD++  L
Sbjct: 620 YNADDARAELKEAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAAATRDQLALL 679

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 680 RERVFGANVGD 690


>gi|302023818|ref|ZP_07249029.1| excinuclease ABC subunit B [Streptococcus suis 05HAS68]
          Length = 661

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/655 (53%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI  L+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEF   FP NAVEYFVSY DYYQPEAYVP +DTYIEK+SS N++ID++RH
Sbjct: 70  HNKTLAGQLYSEFNALFPQNAVEYFVSYSDYYQPEAYVPSSDTYIEKDSSSNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+SLV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGQEISRDQLLNSLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ + +V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGDVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    + TA+  I+ EL+ +L   E EG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMETAIAKIQAELEEQLKIFEAEGKLLEAQRLKQRTDYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ    +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQT-DTVVEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T+S++ A++ET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADKVTESMRKAMEETARRRQIQMAYNEEHGIIPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A T +        +L+K + KA +K L  QM  AA+ L+FE AA+IRD +  LK+
Sbjct: 606 AVTQDKEEVVDFNALNKDERKAMIKKLEGQMQEAAEVLDFELAAQIRDMVIELKN 660


>gi|85706423|ref|ZP_01037517.1| excinuclease ABC subunit B [Roseovarius sp. 217]
 gi|85669196|gb|EAQ24063.1| excinuclease ABC subunit B [Roseovarius sp. 217]
          Length = 741

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/667 (63%), Positives = 523/667 (78%), Gaps = 1/667 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
              +    F + T + P+GDQP AIA+L +GI   E+ Q+LLG TG+GKTFTMAK+IEA 
Sbjct: 33  EKLEGGRRFTLATTFEPAGDQPTAIAELSQGITEGERNQVLLGATGTGKTFTMAKIIEAT 92

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES IN
Sbjct: 93  QRPAIILAPNKTLAAQLYGEFKGFFPENAVEYFVSYYDYYQPEAYVARSDTYIEKESQIN 152

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           EQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   LK+G+S +Q+ +++ L
Sbjct: 153 EQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLKLGESYDQRAIMADL 212

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V QQYKR D    RG+FRV GDS+EIFP+HLED AWR+S FG ++E I+EF PLTG+K  
Sbjct: 213 VAQQYKRNDHAFQRGSFRVRGDSVEIFPAHLEDRAWRLSFFGEELEAITEFDPLTGEKTD 272

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
             E I+IYANSHYVTP+PT+  A+  IK EL+ RL +L  +G+LLEAQRLEQR  +DLEM
Sbjct: 273 TFEKIRIYANSHYVTPKPTMQQAIIGIKRELRQRLDQLVNDGKLLEAQRLEQRTNFDLEM 332

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           LE TG C  IENYSRYLTGR PGEPPPTLFE+IP+ +++F DESHV++PQI GMY+GD+ 
Sbjct: 333 LEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDHAIVFADESHVSVPQIGGMYKGDYR 392

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WE+EQ  G+  EQ+IRPT
Sbjct: 393 RKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAKWEIEQTGGVFTEQVIRPT 452

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP VEIR    QV+D+ DE+   A  G R L+T LTKRMAEDLTEY++E+ IRVRYM
Sbjct: 453 GLLDPQVEIRPVDMQVDDLLDEVRRVAADGYRSLVTTLTKRMAEDLTEYMHEQGIRVRYM 512

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++ T+ERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLI
Sbjct: 513 HSDIDTIERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLI 572

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN   +VI+YAD IT S++ A+ ET RRR+KQ+ +N+ H I P ++K+ + ++
Sbjct: 573 QTIGRAARNAEGRVIMYADRITGSMERALGETNRRRDKQIAYNQAHGITPATIKKNVDDI 632

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           +  +   D     ++    +  L+    +A L  LR+ M  AA+NL FEEAAR+RDE+KR
Sbjct: 633 LQGLYKGDVDMARVTAKVDK-PLAGANLQAVLDGLRRDMRKAAENLEFEEAARLRDEVKR 691

Query: 793 LKSSPYF 799
           L++    
Sbjct: 692 LEAVDLL 698


>gi|325694670|gb|EGD36577.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK150]
          Length = 662

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEVQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|325264764|ref|ZP_08131493.1| excinuclease ABC subunit B [Clostridium sp. D5]
 gi|324030056|gb|EGB91342.1| excinuclease ABC subunit B [Clostridium sp. D5]
          Length = 662

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/667 (52%), Positives = 477/667 (71%), Gaps = 5/667 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AIA L++G     + + LLGVTGSGKTFTMA VI+A+ +P +
Sbjct: 1   MDHFELVSEYAPTGDQPQAIADLVQGFKEGNQFETLLGVTGSGKTFTMANVIQALNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DTYI K+S+IN++ID+
Sbjct: 61  IIAHNKTLAAQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSAINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT +L ER D I+V+SVSCIYG+GS   Y  M++ L+ G + ++ E+++ L++ QY
Sbjct: 121 LRLSATMALAERRDVIIVASVSCIYGLGSPMDYQNMVISLRPGMTRDRDEVMAKLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RGTFRV GD +E+ P++ ED A R+  FG+++E I+E   LTG+    ++ I
Sbjct: 181 DRNEMDFHRGTFRVRGDVLEVIPAYSEDTAIRIEWFGDEVERITEIDILTGEIKDELKHI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV  +  +  A+  I++EL+ R+ E +++ +LLEAQR+ +R  +D+EML+ TG
Sbjct: 241 AIFPASHYVVDKENIARAVTAIEKELEERVKEFKRQDKLLEAQRIAERTNFDIEMLKETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L G  PG+PP TL +Y P+D ++ +DESH TIPQI GMY GD  RK+TL
Sbjct: 301 FCSGIENYSRHLAGLAPGQPPYTLIDYFPDDFIIMIDESHKTIPQIGGMYSGDQSRKSTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL F+E+       + VSATP  +E E  + +  EQ+IRPTGL+DP
Sbjct: 361 VDFGFRLPSAKDNRPLNFQEFESKINQVMFVSATPNVYEEEH-ELLRTEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R    Q++D+  E+N    +  ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS V 
Sbjct: 420 EVTVRPVEGQIDDLIGEVNKEIAKKNKVLVTTLTKRMAEDLTDYMREVGIRVKYLHSGVD 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS TSLIQTIGR
Sbjct: 480 TLERTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSATSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YADTIT S++ A++ET RRRE Q+++N++H I PQ++++ + ++I    
Sbjct: 540 AARNAEGHVIMYADTITDSMRTAMEETQRRREIQMQYNEEHGITPQTIQKSVRDLISISK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
              A    +  D +  S+S+K+ +  +  L KQM  AA  LNFE AA +RD++  LK   
Sbjct: 600 KVAAEEMRMEKDPE--SMSRKELEKLISDLSKQMKKAAAELNFESAAELRDKLVELKK-- 655

Query: 798 YFQGLDD 804
              GLDD
Sbjct: 656 VLNGLDD 662


>gi|330722188|gb|EGH00083.1| Excinuclease ABC subunit B [gamma proteobacterium IMCC2047]
          Length = 670

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/669 (55%), Positives = 485/669 (72%), Gaps = 9/669 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T FQ+ + + PSGDQPAAI QL  GI +    Q LLGVTGSGKTFT A VI    RPA+V
Sbjct: 3   TDFQVISPFEPSGDQPAAIEQLSNGIEAGLAYQTLLGVTGSGKTFTAANVIANTGRPALV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY EFK FFP N+VEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEFKEFFPRNSVEYFVSYYDYYQPEAYVPASDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D IVV++VS IYG+G   +Y  M++ L  GD ++Q+ +L  L + QYK
Sbjct: 123 RLSATKALLERQDAIVVATVSAIYGLGDPGAYLNMVMHLDRGDRIDQRSVLRRLAELQYK 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ + R T+RV GD I+I+P+  +  A R+ +F ++IE I+ F PLTG+ ++ +  I 
Sbjct: 183 RNDVELHRATYRVRGDVIDIYPAESDRDAIRIELFDDEIESIAVFDPLTGEVLKRLPRIT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR TL  A + IKEELK RL +L    +L+EAQRLEQR  +D+EM+   G 
Sbjct: 243 IYPKTHYVTPRETLLEATEKIKEELKERLTQLRDNNKLVEAQRLEQRTNFDVEMILELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GE PPTLF+Y+P+++LLFVDESHVTIPQ+  MY+GD  RK TL 
Sbjct: 303 CNGIENYSRYLSGRPDGEAPPTLFDYLPDNALLFVDESHVTIPQLGAMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP+RFEEW    P T+ +SATPG +E E   G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMRFEEWEHAAPQTVFISATPGPYEDEHA-GQVVDQVVRPTGLIDPE 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           ++IR A TQV+D+  EIN       R+L+TVLTKRMAEDLTEY  E  +RVRY+HS++ T
Sbjct: 422 IQIRPASTQVDDLLSEINRRVANNERVLVTVLTKRMAEDLTEYYGEHGVRVRYVHSDIDT 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLR+G+FDVLVGINLLREG+DIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 482 VERVEIIRDLRIGEFDVLVGINLLREGIDIPEASLVAILDADKEGFLRSERSLIQTIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL- 737
           ARN N   ILYAD +T S+Q A+DET RRREKQL +NK+HNI P+SV + + ++++  + 
Sbjct: 542 ARNANGTAILYADRVTGSMQRAMDETERRREKQLAYNKEHNITPRSVTKSVEDILEGAVT 601

Query: 738 -------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                   +  A           +++  +    L  L  +M+ AA N+ FEEAA+ RD+I
Sbjct: 602 PGARGKQSKKVAEPQADYQVDPKTMTPVQLGKLLNQLEDKMYEAAKNMKFEEAAQYRDQI 661

Query: 791 KRLKSSPYF 799
             + ++   
Sbjct: 662 SAINANMLG 670


>gi|157149718|ref|YP_001450327.1| excinuclease ABC subunit B [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189037999|sp|A8AX17|UVRB_STRGC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|157074512|gb|ABV09195.1| excinuclease ABC, B subunit [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 662

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELISKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L + EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAKFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            A  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 TALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|30248789|ref|NP_840859.1| excinuclease ABC subunit B [Nitrosomonas europaea ATCC 19718]
 gi|81838758|sp|Q82WA9|UVRB_NITEU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|30180384|emb|CAD84696.1| Helicase subunit of the DNA excision repair complex [Nitrosomonas
           europaea ATCC 19718]
          Length = 695

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/668 (55%), Positives = 486/668 (72%), Gaps = 4/668 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + +++   + P+GDQP AI  L++GI S    Q LLGVTGSGKTFT+A +I  + RPAI+
Sbjct: 8   SPYKLNQAFQPAGDQPEAIRILVEGIESGLSFQTLLGVTGSGKTFTIANMIARLGRPAII 67

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++M
Sbjct: 68  MAPNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQM 127

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+SLLER D I+V++VSCIYGIG    Y  MI+ ++  + + Q++++  L   QY+
Sbjct: 128 RLSATKSLLEREDAIIVATVSCIYGIGDPVDYHGMILHVREHEKISQRDIIQRLTGMQYQ 187

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +    RGTFRV GD +++FP+   + A R+S+F +++E ++ F PLTGQ  + V    
Sbjct: 188 RNEFEFARGTFRVRGDVLDVFPAENSETALRISLFDDEVESMTLFDPLTGQTRQKVSRYT 247

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +SHYVTPR T   A++ IK EL  RL    +  +L+EAQRLEQR  +DLEML   G 
Sbjct: 248 VYPSSHYVTPRSTTLRAIETIKTELTGRLNYFHENHKLVEAQRLEQRTRFDLEMLNELGF 307

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+GR PG+PPPTL +Y+P+++L+ +DESHVT+PQI GMY+GD  RK  L 
Sbjct: 308 CKGIENYSRHLSGRQPGDPPPTLIDYLPDNALMIIDESHVTVPQIGGMYKGDRSRKENLV 367

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            YGFRLPS +DNRPLRFEE+  L P TI VSATP  +E+++  G I EQ++RPTGLVDP 
Sbjct: 368 AYGFRLPSALDNRPLRFEEFEKLMPQTIFVSATPADYEIQRS-GQIAEQVVRPTGLVDPV 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  E++L A Q  R+L+T LTKRMAEDLT+Y  +  IRVRY+HS++ T
Sbjct: 427 IIIRPVTTQVDDLMSEVSLRAAQNERVLVTTLTKRMAEDLTDYFSDHGIRVRYLHSDIDT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQT+GRA
Sbjct: 487 VERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVGILDADKEGFLRSERSLIQTMGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           AR+VN  VILYAD IT S++ AIDET RRR KQ   N+++NI P+ V ++I ++ID +  
Sbjct: 547 ARHVNGTVILYADKITNSMRRAIDETERRRNKQKLFNQQNNITPRGVNKRIKDLIDGVYD 606

Query: 739 EDAATTN---ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            + A  +     I A+  ++ + +    ++ L K M  AA N+ FE+AA+ RDEIK L+S
Sbjct: 607 SENAAEHRKVAQIQARYAAMDEAQLAKEIQRLEKSMLEAARNMEFEQAAQYRDEIKNLRS 666

Query: 796 SPYFQGLD 803
             +   +D
Sbjct: 667 KLFIGIID 674


>gi|289435750|ref|YP_003465622.1| excinuclease ABC, B subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171994|emb|CBH28540.1| excinuclease ABC, B subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|313636365|gb|EFS02146.1| excinuclease ABC subunit B [Listeria seeligeri FSL S4-171]
          Length = 658

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/656 (53%), Positives = 467/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI QL+ G+    K Q LLG TG+GKTFT++ VI+ + +P +VMA
Sbjct: 5   FELVSKYSPQGDQPRAIEQLVSGLRKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS   Y +M+V L++G  + + +LL  LV  QY R 
Sbjct: 125 SATASLFERRDVIIIASVSCIYGLGSPVEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ I   E + I+
Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCMRVEFFGDEIERIREVDALTGEIIGEREHVSIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  IK EL+ RL  L  + +LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 245 PASHFVTRPDIMKKAIVNIKAELEERLKVLRADNKLLEAQRLEQRTNYDLEMMEEMGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y P+D  + +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQIRGMFNGDQARKQMLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + +SATPG +ELE+    ++EQIIRPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEK-NPDVIEQIIRPTGLLDPIVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+ DEIN   ++  R+L+T LTK+M+EDLT YL E  ++V+Y+HSEVKTLE
Sbjct: 424 IRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG +DV+VGINLLREG+D+PE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P ++K++I  +I      D
Sbjct: 544 NENGRVIMYADKMTDSMRNSISETERRRKIQIEYNEKHGITPMTIKKEIRGIIAATSAAD 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                   D  +  +SKK+    ++ +  +M  AA  L+FE AA +RD +  +K+ 
Sbjct: 604 EREAIKQHDLSK--MSKKERDVFIEGMEHEMKEAAKALDFERAAELRDALLEIKAE 657


>gi|113867172|ref|YP_725661.1| excinuclease ABC subunit B [Ralstonia eutropha H16]
 gi|113525948|emb|CAJ92293.1| Excinuclease ABC, helicase subunit (B) [Ralstonia eutropha H16]
          Length = 694

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/670 (54%), Positives = 486/670 (72%), Gaps = 4/670 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+   + P+GDQP AI QL++G+      Q LLGVTGSGKTFTMA VI  M RPAIV
Sbjct: 22  SPFQLYQPFPPAGDQPEAIRQLVEGVEDGLSFQTLLGVTGSGKTFTMANVIARMGRPAIV 81

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I++M
Sbjct: 82  FAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQM 141

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+SLLER D I+V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  QY 
Sbjct: 142 RLSATKSLLERRDTIIVATVSAIYGIGNPTEYHQMILTLRAGDKISQRDVIARLIAMQYT 201

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +    RGTFRV GD+I+IFP+   ++A R+ MF +++E +  F PLTG+  + +    
Sbjct: 202 RNETDFQRGTFRVRGDTIDIFPAEHAEMAVRLEMFDDEVESLQFFDPLTGRVRQKIPRFT 261

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +SHYVTPR T+  A++ IK EL+ RL    KE RL+EAQRLEQR  +DLEML   G 
Sbjct: 262 VYPSSHYVTPRETVLRAIEAIKSELRERLEFFHKENRLVEAQRLEQRTRFDLEMLSELGF 321

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHV I Q++GMY GD  RK TL 
Sbjct: 322 CKGIENYSRHLSGAKPGEPPPTLVDYLPPDALMFLDESHVLIGQLNGMYNGDRARKTTLV 381

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+F+E+       + VSATP  +E +   G +VEQ++RPTGLVDP 
Sbjct: 382 EYGFRLPSALDNRPLKFDEFERKMRQVMFVSATPAQFEQDNA-GQVVEQVVRPTGLVDPI 440

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R A TQV+D+  EI+   + G R+L+T LTKRMAE LTE+L E  ++VRY+HS++ T
Sbjct: 441 IMVRPATTQVDDLLSEIHARVEVGERVLVTTLTKRMAEQLTEFLSENGVKVRYLHSDIDT 500

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 501 VERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA 560

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD +T+S++ AI ET RRR KQ+  N+ + I P+ V ++I ++ID +  
Sbjct: 561 ARNVNGTAILYADRMTESMKKAIGETERRRAKQIAFNEANGITPRGVVKRIKDIIDGVYS 620

Query: 739 EDAATTNI---SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            + A   +      A+   +S+K+    ++ L K M   A NL FE+AA++RD++ +LK+
Sbjct: 621 VNDARAELLAAQEQARYEDMSEKQVSKEIRRLEKLMLDHARNLEFEQAAQVRDQLAKLKA 680

Query: 796 SPYFQGLDDS 805
             +    + +
Sbjct: 681 QVFGASGEGA 690


>gi|107028610|ref|YP_625705.1| excinuclease ABC subunit B [Burkholderia cenocepacia AU 1054]
 gi|116690231|ref|YP_835854.1| excinuclease ABC subunit B [Burkholderia cenocepacia HI2424]
 gi|105897774|gb|ABF80732.1| Excinuclease ABC subunit B [Burkholderia cenocepacia AU 1054]
 gi|116648320|gb|ABK08961.1| Excinuclease ABC subunit B [Burkholderia cenocepacia HI2424]
          Length = 707

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/671 (54%), Positives = 483/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 32  EGSPFQLYQPYPPAGDQPTAIDTLVEGVGDGLAFQTLLGVTGSGKTFTMANTIARLGRPA 91

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 92  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 151

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 152 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRAGDKLGQRDVIARLIAMQ 211

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 212 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKIPR 271

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +DLEML+  
Sbjct: 272 FTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRFDLEMLQEL 331

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PG+PPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 332 GFCKGIENYSRHFSGAAPGDPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 391

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ++RPTGLVD
Sbjct: 392 LVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQVVRPTGLVD 450

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A +QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 451 PEIEVRPASSQVDDVLTEINARVKAGERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 510

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 511 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 570

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYAD +T+S++ AI ET RRR KQ+ +N+K  I P+ V ++I ++ID +
Sbjct: 571 RAARNVNGKAILYADNMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGV 630

Query: 737 LLED---AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D   A        A+   +S+K+    +K L KQM   A NL FE+AA  RD++  L
Sbjct: 631 YNADDVRAELKEAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAAATRDQLAVL 690

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 691 RERVFGANVGD 701


>gi|237801114|ref|ZP_04589575.1| excinuclease ABC subunit B [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023971|gb|EGI04028.1| excinuclease ABC subunit B [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 671

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/670 (55%), Positives = 486/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +
Sbjct: 1   MSEFQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+I+P+  +  A RV +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLVEAMENIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G +VEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR A TQV+D+  EI+  A    R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ 
Sbjct: 420 QIEIRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S++ AI ET RRREKQ+  N +H I P+ V + + ++++   
Sbjct: 540 AARNLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGAT 599

Query: 738 LEDAATTNISIDAQQLS---------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  + +      A+             S  +    ++ L ++M+  A +L FE AA++RD
Sbjct: 600 VPGSRSKKRKGMAKAAEENGRYENELRSPSEINKRIRQLEEKMYQLARDLEFEAAAQMRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EIGKLRERLL 669


>gi|283795874|ref|ZP_06345027.1| excinuclease ABC subunit B [Clostridium sp. M62/1]
 gi|291076507|gb|EFE13871.1| excinuclease ABC subunit B [Clostridium sp. M62/1]
          Length = 663

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/658 (53%), Positives = 481/658 (73%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AIA+L+KG     + + LLGVTGSGKTFTMA VI+A+ +P +
Sbjct: 1   MDHFELVSEYAPTGDQPQAIAELVKGFKEGNQFETLLGVTGSGKTFTMANVIQALNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID+
Sbjct: 61  IIAHNKTLAAQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER+D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E++  L+  QY
Sbjct: 121 LRHSATAALSERSDVIIVASVSCIYGLGSPIDYKEMVISLRPGMIKDRDEVIHKLIDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RG+FRV GD +EI+P++    A+R+  FG++++ I+E   LTG+    +  +
Sbjct: 181 TRNDMDFKRGSFRVRGDVLEIYPAYSGGDAYRIEFFGDEVDRITEIDTLTGEIKAQLGHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV P+  +  A K I EELK ++   + E +LLEAQR+ +R  +D+EM+  TG
Sbjct: 241 AIFPASHYVIPKEKMELAAKNILEELKEQVAWFKSEDKLLEAQRILERTNFDVEMMRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTG  PGEPP TL +Y PED L+ +DESH+T+PQI GMY GD  RK TL
Sbjct: 301 FCSGIENYSRHLTGSAPGEPPCTLIDYFPEDFLIIIDESHITLPQIRGMYAGDRSRKKTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL FEE+       + VSATP  +E E  + +  EQIIRPTGL+DP
Sbjct: 361 VEYGFRLPSALDNRPLNFEEFESKIDQMLFVSATPSDYE-EAHEMLRAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+++R    Q++D+  E+N   ++  ++L+T LTKRMAEDLT+Y+ +  IRV+Y+HS++ 
Sbjct: 420 PIDVRPVEGQIDDLVSEVNREIKKKGKVLITTLTKRMAEDLTDYMRDAGIRVKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQT+GR
Sbjct: 480 TLERAEIIRDMRLDVFDVLVGINLLREGLDIPEISLVAILDADKEGFLRSETSLIQTVGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YADTIT S+++AI+ET RRRE Q  +N++H+I P ++K+ + ++I    
Sbjct: 540 AARNSEGHVIMYADTITDSMRVAIEETKRRREIQQAYNEEHHITPTTIKKAVRDLISISQ 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             +  T  ++ D +  S+ +K+ K  +K L K+MH AA  LNFEEAA +RD +  +K 
Sbjct: 600 AAEGVTNEVTKDPE--SMDEKELKKLVKELTKKMHQAAAELNFEEAAILRDRMVEIKK 655


>gi|257056574|ref|YP_003134406.1| excinuclease ABC subunit B [Saccharomonospora viridis DSM 43017]
 gi|256586446|gb|ACU97579.1| Excinuclease ABC subunit B [Saccharomonospora viridis DSM 43017]
          Length = 719

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/706 (51%), Positives = 494/706 (69%), Gaps = 30/706 (4%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
               ++   +    F++ +DY P+GDQPAAI +L + I + EK  +LLG TG+GK+ T A
Sbjct: 14  EFRPVSEIPRSDGRFKVVSDYEPAGDQPAAIDELERRIKAGEKHVVLLGATGTGKSATTA 73

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            +IE +QRP +VMA NK LAAQL +E + FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIE
Sbjct: 74  WLIERLQRPTLVMAHNKTLAAQLANELREFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIE 133

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+SSIN+ ++R+RHSAT +LL R D IVVSSVSCIYG+G+ +SY     +L +G+ V++ 
Sbjct: 134 KDSSINDDVERLRHSATMNLLSRRDVIVVSSVSCIYGLGTPQSYLDRSTRLAVGEEVDRD 193

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
             L +LV  QY R D+   RGTFRV GD++EI P++ E++A RV  FG++I+++   +PL
Sbjct: 194 TFLRALVDVQYTRNDLAFERGTFRVRGDTVEIIPAY-EELAIRVEFFGDEIDKLYYLHPL 252

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG  +R V+ ++I+  +HYV     +  A++ I+ EL+ ++ +LE++G+LLEAQRL  R 
Sbjct: 253 TGDIVREVDEVRIFPATHYVASPERMEKAIRGIEAELEEQIAKLERQGKLLEAQRLRMRT 312

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
           TYD+EM+   G C  IENYSR++ GR PG  P TL +Y PED LL +DESHVT+PQI GM
Sbjct: 313 TYDIEMMRQVGFCSGIENYSRHIDGREPGSAPATLLDYFPEDFLLVIDESHVTVPQIGGM 372

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           Y GD  RK TL E+GFRLPS +DNRPL +EE++     T+ +SATPG +E+ Q  G  VE
Sbjct: 373 YEGDASRKRTLVEHGFRLPSALDNRPLTWEEFSDRIGQTVYLSATPGPYEMSQTGGEFVE 432

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q+IRPTGLVDP V ++    Q++D+  EI + A++  R+L+T LTK+MAEDLT+YL E  
Sbjct: 433 QVIRPTGLVDPEVIVKPTEGQIDDLVHEIRIRAEKDERVLVTTLTKKMAEDLTDYLLELG 492

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           IRVRY+HSE+ TL R+E++R LR G FDVLVGINLLREGLD+PE  LV+ILDADKEGFLR
Sbjct: 493 IRVRYLHSEIDTLRRVELLRQLRSGDFDVLVGINLLREGLDLPEVSLVSILDADKEGFLR 552

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S TSLIQTIGRAARNV+ +V +YADTIT S++ AIDET RRREKQ+ +NK+H I+P+ ++
Sbjct: 553 SSTSLIQTIGRAARNVSGQVHMYADTITDSMRYAIDETNRRREKQIAYNKEHGIDPKPLR 612

Query: 727 EKIMEVIDPILLEDAA---------------------------TTNISIDAQQLSLSKKK 759
           +KI +++D +  E                              ++ + +D    ++ + +
Sbjct: 613 KKIADILDRVYTEAEDSELGIEVGGSGRNVSRGKTPEQGDRKRSSGVLVDRDVSNMPRAE 672

Query: 760 GKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
               ++ L  QM  AA +L FE AAR+RDEI  LK     +G+D++
Sbjct: 673 LADLIRQLTDQMMQAARDLQFELAARLRDEISELKKE--LRGMDEA 716


>gi|15901100|ref|NP_345704.1| excinuclease ABC subunit B [Streptococcus pneumoniae TIGR4]
 gi|111658438|ref|ZP_01409117.1| hypothetical protein SpneT_02000409 [Streptococcus pneumoniae
           TIGR4]
 gi|148985134|ref|ZP_01818373.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP3-BS71]
 gi|148989260|ref|ZP_01820640.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP6-BS73]
 gi|148998669|ref|ZP_01826108.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP11-BS70]
 gi|149002606|ref|ZP_01827538.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP14-BS69]
 gi|149007103|ref|ZP_01830772.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP18-BS74]
 gi|168486559|ref|ZP_02711067.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC1087-00]
 gi|168575694|ref|ZP_02721609.1| excinuclease ABC, B subunit [Streptococcus pneumoniae MLV-016]
 gi|182684034|ref|YP_001835781.1| excinuclease ABC subunit B [Streptococcus pneumoniae CGSP14]
 gi|221231933|ref|YP_002511085.1| UvrABC system protein B (UvrB protein) [Streptococcus pneumoniae
           ATCC 700669]
 gi|225854704|ref|YP_002736216.1| excinuclease ABC subunit B [Streptococcus pneumoniae JJA]
 gi|237649939|ref|ZP_04524191.1| excinuclease ABC subunit B [Streptococcus pneumoniae CCRI 1974]
 gi|237822511|ref|ZP_04598356.1| excinuclease ABC subunit B [Streptococcus pneumoniae CCRI 1974M2]
 gi|303258874|ref|ZP_07344853.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP-BS293]
 gi|303264228|ref|ZP_07350148.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS397]
 gi|303266141|ref|ZP_07352034.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS457]
 gi|303268132|ref|ZP_07353932.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS458]
 gi|307067887|ref|YP_003876853.1| DNA excision repair complex helicase [Streptococcus pneumoniae
           AP200]
 gi|18279297|sp|Q54986|UVRB_STRPN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238691159|sp|B2IPP4|UVRB_STRPS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|254764911|sp|B8ZJQ9|UVRB_STRPJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|254764913|sp|C1CEJ5|UVRB_STRZJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|14972720|gb|AAK75344.1| excinuclease ABC, subunit B [Streptococcus pneumoniae TIGR4]
 gi|147755506|gb|EDK62554.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP11-BS70]
 gi|147759217|gb|EDK66210.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP14-BS69]
 gi|147761407|gb|EDK68373.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP18-BS74]
 gi|147922579|gb|EDK73697.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP3-BS71]
 gi|147925238|gb|EDK76317.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP6-BS73]
 gi|182629368|gb|ACB90316.1| excinuclease ABC subunit B [Streptococcus pneumoniae CGSP14]
 gi|183570451|gb|EDT90979.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC1087-00]
 gi|183578231|gb|EDT98759.1| excinuclease ABC, B subunit [Streptococcus pneumoniae MLV-016]
 gi|220674393|emb|CAR68943.1| UvrABC system protein B (UvrB protein) [Streptococcus pneumoniae
           ATCC 700669]
 gi|225722985|gb|ACO18838.1| excinuclease ABC, B subunit [Streptococcus pneumoniae JJA]
 gi|301800159|emb|CBW32764.1| UvrABC system protein B (UvrB protein) [Streptococcus pneumoniae
           OXC141]
 gi|301801906|emb|CBW34630.1| UvrABC system protein B (UvrB protein) [Streptococcus pneumoniae
           INV200]
 gi|302639817|gb|EFL70273.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP-BS293]
 gi|302642349|gb|EFL72696.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS458]
 gi|302644311|gb|EFL74565.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS457]
 gi|302646040|gb|EFL76267.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS397]
 gi|306409424|gb|ADM84851.1| Helicase subunit of the DNA excision repair complex [Streptococcus
           pneumoniae AP200]
 gi|332074569|gb|EGI85043.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA17545]
 gi|332200686|gb|EGJ14758.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA41317]
 gi|332203087|gb|EGJ17155.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA47901]
          Length = 662

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+TI QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|300853513|ref|YP_003778497.1| excinuclease ABC subunit B [Clostridium ljungdahlii DSM 13528]
 gi|300433628|gb|ADK13395.1| excinuclease ABC, subunit B [Clostridium ljungdahlii DSM 13528]
          Length = 660

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/659 (53%), Positives = 475/659 (72%), Gaps = 2/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + P+GDQP AI  +  G+    K Q LLGVTGSGKTFTMA +IE +Q+P +
Sbjct: 1   MGVFKIHSKFKPTGDQPKAIDSIADGVLKGNKFQTLLGVTGSGKTFTMANIIEKVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF++FFP N+VEYFVSYYDYYQPEAY+P+TDTYIEK++SIN++ID+
Sbjct: 61  VLAHNKTLAAQLCSEFRDFFPDNSVEYFVSYYDYYQPEAYIPQTDTYIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +LLER D IVV+SVSCIYG+G+ E Y ++ + L+ G    + E+L  LV+ QY
Sbjct: 121 LRHSATSALLERKDVIVVASVSCIYGLGNPEEYKKLTLSLRPGMIKNRDEVLKKLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI  +RGTFRV GD ++IFP+   D A RV  FG++I++I EF  LTG  I   +  
Sbjct: 181 ERNDINFVRGTFRVKGDIVDIFPAASTDHAIRVEFFGDEIDKIREFDVLTGDTIGFRKHA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+ T R  +  A++ I+EEL+ RL EL  + +LLEAQRL+QR  +D+EM+   G
Sbjct: 241 NIFPASHFATSREKMELAIEKIEEELEHRLKELTSQDKLLEAQRLKQRTNFDIEMMREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR + GR  G PP TL +Y P+D LLF+DESHVT+PQ+  MY GD  RK +L
Sbjct: 301 YCSGIENYSRIMDGRAKGSPPQTLIDYFPDDFLLFIDESHVTLPQVKAMYAGDRSRKDSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL+F+E+       + VSATP  +ELE  +  + EQI+RPTGL+DP
Sbjct: 361 VEYGFRLPSAYDNRPLKFQEFEKKINQVVFVSATPADYELEHSEN-VAEQILRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++  + Q++D+Y+ I     +G RIL+T LTK+MAEDLT+Y  + N++ RY+HS + 
Sbjct: 420 EIIVKPIKGQIDDLYNSIQKTISRGYRILVTTLTKKMAEDLTDYFKDMNVKARYLHSSIA 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T++R++IIRDLR G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TIDRMKIIRDLRKGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+YAD ITKS+  AI ET RRR+ Q+E+NKK+ I P+++ + I EVI+  +
Sbjct: 540 AARNSESKVIMYADVITKSMDKAISETKRRRKIQIEYNKKNGIVPKTINKAIREVIESTM 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + +      S++ + +    +K    +++  +QM  AA  L FEEAA++RD I +LK  
Sbjct: 600 VLEEKEEYNSLE-EAVKADNEKIDELIEAHERQMKTAAKELRFEEAAKLRDAILKLKKQ 657


>gi|260584667|ref|ZP_05852413.1| excinuclease ABC subunit B [Granulicatella elegans ATCC 700633]
 gi|260157690|gb|EEW92760.1| excinuclease ABC subunit B [Granulicatella elegans ATCC 700633]
          Length = 658

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/662 (52%), Positives = 469/662 (70%), Gaps = 4/662 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P GDQP AI +L+ GI   +  Q LLG TG+GKTFT+A VI+ + +P +
Sbjct: 1   MDHFELHSPYQPQGDQPQAIKELVSGILEGKHEQTLLGATGTGKTFTIANVIKEVNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEKESS+N++ID+
Sbjct: 61  VLAHNKTLAGQLYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKESSVNDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +LLER D IVV+SVSCIYG+ + E+Y + ++ L+ G  VE+ +LL+ LV+ Q+
Sbjct: 121 LRHSATSALLERRDVIVVASVSCIYGLVNPENYREHVLSLREGMEVERNQLLTRLVEMQF 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RG+FRV GD ++IFP   +  A RV  FG++IE + E   LTG+    VE +
Sbjct: 181 ERNDIDFRRGSFRVRGDIVDIFPPGHDSSAIRVEFFGDEIEALKEIDVLTGEVKATVEHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  +H+V+    ++ A+  IK ELK RL EL +  +LLEAQRLEQR  YD+EML   G
Sbjct: 241 PIFPAAHFVSNEDEISRAVSTIKAELKERLEELRENNQLLEAQRLEQRTNYDIEMLLEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR++ GR PGE P TL ++ PED+L  VDESH+T+ QI  M+ GD  RK  L
Sbjct: 301 YCNGIENYSRHMDGRKPGEAPYTLLDFFPEDALYVVDESHITMSQIRAMFNGDRARKEQL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPLRFEE+    P  I VSATPG +E+      + EQIIRPTGL+DP
Sbjct: 361 IQYGFRLPSALDNRPLRFEEFEERIPQMIYVSATPGPYEMAHTP-TVTEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    Q++D+  EI+   ++  R+ +T LTK+M+EDLT+YL E  IRV+Y+HS++K
Sbjct: 420 LIEVRPINGQIDDLIREIHDRIEKNERVFITTLTKKMSEDLTDYLKEVGIRVKYLHSDIK 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIR+LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SL+QTIGR
Sbjct: 480 TLERTEIIRNLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N +VI+YAD IT S++ AIDET RRR  Q  +NK+H I P+++ + I ++I    
Sbjct: 540 AARNANGRVIMYADKITDSMKYAIDETNRRRSIQEAYNKEHGITPKTIHKNIRDLIAITH 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             +   T  +       ++ ++ +  ++ +  +M  AA +LNFE+AA++RD I  L++  
Sbjct: 600 AVEKEETTQT---DFKQMTVQQRREAIEVMELEMRAAAKDLNFEKAAQLRDMILELRAQY 656

Query: 798 YF 799
             
Sbjct: 657 KL 658


>gi|260427850|ref|ZP_05781829.1| excinuclease ABC, B subunit [Citreicella sp. SE45]
 gi|260422342|gb|EEX15593.1| excinuclease ABC, B subunit [Citreicella sp. SE45]
          Length = 732

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/674 (62%), Positives = 524/674 (77%), Gaps = 1/674 (0%)

Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181
           +  P          +    F M T++  +GDQP AIA+L  G+   E+ Q+LLG TG+GK
Sbjct: 13  MHAPAPDVKTREKLEGGKRFVMHTEFTAAGDQPTAIAELSSGVRDGERNQVLLGATGTGK 72

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
           TFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP N+VEYFVSYYDYYQPEAYV R+
Sbjct: 73  TFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNSVEYFVSYYDYYQPEAYVARS 132

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           DTYIEKES INEQIDRMRHSATRSLLER+D I+V+SVSCIYGIGSVE+Y  M   L +G 
Sbjct: 133 DTYIEKESQINEQIDRMRHSATRSLLERDDVIIVASVSCIYGIGSVETYGAMTQDLHVGS 192

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
             E +++++ LV QQY+R D    RG+FRV GDS+EI+P+HLED AW++S FG ++E I+
Sbjct: 193 EYEMRKIMADLVAQQYRRNDQAFQRGSFRVRGDSLEIWPAHLEDRAWKLSFFGEELEAIT 252

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
           EF PLTG+K  + E I++YANSHYVTP+PT+N A+  IK+EL+ RL +L  EG+LLEAQR
Sbjct: 253 EFDPLTGEKTGSFERIRVYANSHYVTPKPTMNQAVVQIKKELRQRLDQLVNEGKLLEAQR 312

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
           LEQR  +D+EMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHVT+P
Sbjct: 313 LEQRTNFDIEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVTVP 372

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           QI GMYRGD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELE+  
Sbjct: 373 QIGGMYRGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPSAWELEEAG 432

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G+  EQ+IRPTGL+DP VEIR    QV+D+ DEI    + G R L TVLTKRMAEDLTEY
Sbjct: 433 GVFTEQVIRPTGLLDPMVEIRPVEMQVDDLLDEIRKVTKDGFRTLCTVLTKRMAEDLTEY 492

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L+E+ I+VRYMHS++ T+ERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADK
Sbjct: 493 LHEQGIKVRYMHSDIDTIERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADK 552

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN 721
           EGFLRS+TSLIQTIGRAARN   +VI+YAD IT S++ A+ ET RRREKQ+ +N++H I 
Sbjct: 553 EGFLRSETSLIQTIGRAARNAEGRVIMYADRITGSMERAMAETDRRREKQVAYNEEHGIT 612

Query: 722 PQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
           P +VK+ + +++  +   D     ++      S +    +A L  LR  M  AA+NL FE
Sbjct: 613 PATVKKNVDDILAGLYQGDVDMNRVTATIDS-SRAGGNLEAVLDGLRTDMRKAAENLEFE 671

Query: 782 EAARIRDEIKRLKS 795
           EAAR+RDEIKRL++
Sbjct: 672 EAARLRDEIKRLEA 685


>gi|325695926|gb|EGD37817.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK160]
          Length = 662

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  ++ L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVISLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLGIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|167897040|ref|ZP_02484442.1| excinuclease ABC subunit B [Burkholderia pseudomallei 7894]
          Length = 696

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/671 (54%), Positives = 482/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y PSGDQP AIA L++G+      Q LLGVTGSGKT+TMA  I  + RPA
Sbjct: 21  EGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANTIARLGRPA 80

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 81  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 140

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+++ L+  Q
Sbjct: 141 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREVIARLIAMQ 200

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG+  + +  
Sbjct: 201 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLRLFDPLTGRVRQKIPR 260

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +DLEML+  
Sbjct: 261 FTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRFDLEMLQEL 320

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 321 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 380

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL+F E+       + VSATP  +E     G   EQ++RPTGLVD
Sbjct: 381 LVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYEQRVS-GQTAEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 440 PQIEVRPASTQVDDVLSEITERVKANERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N+K  I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA+ RD++  L
Sbjct: 620 YNADEARAELKEAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAQTRDQLALL 679

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 680 RERVFGANVGD 690


>gi|254481916|ref|ZP_05095159.1| excinuclease ABC, B subunit [marine gamma proteobacterium HTCC2148]
 gi|214038045|gb|EEB78709.1| excinuclease ABC, B subunit [marine gamma proteobacterium HTCC2148]
          Length = 671

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/668 (55%), Positives = 484/668 (72%), Gaps = 8/668 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++++ + P+GDQP AI QL++GI +    Q LLGVTGSGKTFTMA V+E MQRP I+
Sbjct: 3   RPFKVESSFQPAGDQPEAIRQLVEGIQAGLASQTLLGVTGSGKTFTMAHVVEQMQRPTII 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  MAHNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ER DC+VV++VS IYG+G   SY +M + L  G+ ++Q+E+L  L   QY 
Sbjct: 123 RLSATKALMEREDCLVVATVSAIYGLGDPASYYKMRMHLSRGEIIDQREVLRHLADLQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   R  +RV GD I+IFP+  E  A R+ +F  +IE I  F PLTG     V  I 
Sbjct: 183 RNDVDFGRANYRVRGDVIDIFPADSEREAVRIELFDKEIENIYTFDPLTGAVESKVPRIT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SHYVTPR T+  A++ I+ EL +RL +L+   +L+EAQRL QR  YD+EM+   G 
Sbjct: 243 IFPKSHYVTPRDTMLQAVEQIEAELAVRLDQLKDNQKLVEAQRLGQRTKYDMEMIRELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           CQ +ENYSRYL+GR  GEPPPTLFEY+P+++L+ +DESH TIPQI  MY+GD  RK TL 
Sbjct: 303 CQGVENYSRYLSGRKAGEPPPTLFEYLPDNALVIIDESHATIPQIGAMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPLRF+EW  L P  I VSATPG++E +   G +VEQ++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLRFQEWEQLVPQAIFVSATPGAYEADHA-GRVVEQVVRPTGLIDPE 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR A +QV+D+  EI L   +G R+L+T LTKRM+EDLTEYL +  +RVRY+HS++ T
Sbjct: 422 IEIRPATSQVDDLLGEIKLTVDRGERVLVTTLTKRMSEDLTEYLADHGVRVRYLHSDIDT 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 482 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVTILDADKEGFLRSERSLIQTIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N + ILYAD +T S++ AI ET RRREKQLEHN++H I P+ V++ + ++++    
Sbjct: 542 ARNLNGRAILYADRMTGSMERAIAETARRREKQLEHNEEHGITPRGVEKSVKDIMEGARR 601

Query: 739 -------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                  +  A   ++  A+   LS       LK L  QM   A NL FEEAA +RD++ 
Sbjct: 602 MPTKGKGKKVAEPKLAFGAEVARLSPAALSRKLKQLESQMQEHAKNLEFEEAAALRDQLT 661

Query: 792 RLKSSPYF 799
             K   + 
Sbjct: 662 EFKQVAFL 669


>gi|29375355|ref|NP_814509.1| excinuclease ABC subunit B [Enterococcus faecalis V583]
 gi|227554877|ref|ZP_03984924.1| excinuclease ABC subunit B [Enterococcus faecalis HH22]
 gi|257418369|ref|ZP_05595363.1| excinuclease ABC subunit B [Enterococcus faecalis T11]
 gi|81838991|sp|Q837R9|UVRB_ENTFA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|29342815|gb|AAO80579.1| excinuclease ABC, subunit B [Enterococcus faecalis V583]
 gi|227175990|gb|EEI56962.1| excinuclease ABC subunit B [Enterococcus faecalis HH22]
 gi|257160197|gb|EEU90157.1| excinuclease ABC subunit B [Enterococcus faecalis T11]
 gi|315166946|gb|EFU10963.1| excinuclease ABC subunit B [Enterococcus faecalis TX1341]
 gi|315573458|gb|EFU85649.1| excinuclease ABC subunit B [Enterococcus faecalis TX0309B]
 gi|315581419|gb|EFU93610.1| excinuclease ABC subunit B [Enterococcus faecalis TX0309A]
          Length = 665

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/661 (53%), Positives = 475/661 (71%), Gaps = 1/661 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    F + + Y P+GDQPAAIA+L+ G+   EK Q+LLG TG+GKTFT++ VI+ + +P
Sbjct: 5   ETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCI+G+G    YSQ +V L++G  +++ ELL SLV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E   LTG+ +   E
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I+  +H+VT    +  A+  I+EEL+ RL  L  E +LLEAQRLEQR  YD+EM+  
Sbjct: 245 HVAIFPATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    IENYSR++ GR  GEPP TL ++ P+D LL +DESHVT+PQI GMY GD  RK 
Sbjct: 305 MGYTSGIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +V+QIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VEIR    Q++D+  EI+   ++  R+ +T LTK+MAEDLT+Y  E  ++V+Y+HS+
Sbjct: 424 DPEVEIRPIMGQIDDLVGEIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG+FD+L+GINLLREG+D+PE  L+AILDADKEGFLRS+ SL+QT+
Sbjct: 484 IKTLERTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTM 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN   KVI+YAD IT S+Q A+DET RRR  Q  +N++H I P+++ ++I ++I  
Sbjct: 544 GRAARNAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               D   T + +D     LS+++    L  L ++M  AA  L+FE AA +RD I  LK+
Sbjct: 604 SKTADKDETVVQLDKSYKDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKA 663

Query: 796 S 796
           +
Sbjct: 664 A 664


>gi|119476531|ref|ZP_01616882.1| excinuclease ABC subunit B [marine gamma proteobacterium HTCC2143]
 gi|119450395|gb|EAW31630.1| excinuclease ABC subunit B [marine gamma proteobacterium HTCC2143]
          Length = 676

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/674 (55%), Positives = 487/674 (72%), Gaps = 12/674 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + P+GDQP AIA LL+G+ +  + Q LLGVTGSGKTFT+A V+E +QRP IV
Sbjct: 3   KPFKVVSKFAPAGDQPTAIAGLLEGVRAGLRGQTLLGVTGSGKTFTIANVVEGIQRPTIV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVP +DT+I+K++S+NE I++M
Sbjct: 63  MAPNKTLAAQLYGEFKDFFPGNAVEYFVSYYDYYQPEAYVPSSDTFIDKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ER+D IVV++VS IYG+G  + Y +M++ L  GD V+Q+ +L  L + QY 
Sbjct: 123 RLSATKALMERSDTIVVATVSAIYGLGDPKLYMKMMLHLDRGDQVDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RGT+RV GD I++FP+  E  A R+ +F  +I+ +S F PLTG+  R V  + 
Sbjct: 183 RNDIDFARGTYRVRGDVIDVFPADSEQEAVRIELFDEEIDSLSIFDPLTGEVYRRVPRVS 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYVTPR TL  A+  I+EELK RL +L    +L+EAQRLEQR  YDLEM+   G 
Sbjct: 243 IYPKSHYVTPRETLLGALDKIEEELKERLEQLRNNNKLVEAQRLEQRTRYDLEMIRELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  G+PPPTLF+Y+P D+L+ +DESHV +PQI GMY+GD  RK TL 
Sbjct: 303 CNGIENYSRYLSGRGTGDPPPTLFDYLPPDALVVIDESHVGVPQIGGMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPLRF+EW  L    I VSATPG++E E     +VEQ++RPTGL DP 
Sbjct: 363 EYGFRLPSALDNRPLRFDEWEQLVSQVIFVSATPGNYEAEHA-DRVVEQVVRPTGLTDPE 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR A +QV+D+  EI+   +   R+L+T LTKRM+EDLT+YL E  +RVRY+HS+++T
Sbjct: 422 IEIRPATSQVDDLLSEIHKRTKLEERVLVTTLTKRMSEDLTDYLSEHGVRVRYLHSDIET 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 482 VERVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N + ILYAD IT S++ AI ET RRREKQ+EHNK H I P  V + + ++++   +
Sbjct: 542 ARNLNGRAILYADRITGSMERAIGETDRRREKQVEHNKVHGITPVGVVKDVADIMEGARV 601

Query: 739 -----------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                        AA       A+  +++ K+    +K + ++M   A NL FEEAA  R
Sbjct: 602 PGSKGKRNAKGRKAAEPAAHYQAEVAAMTPKQLVQEIKRMEQKMFEHAKNLEFEEAAATR 661

Query: 788 DEIKRLKSSPYFQG 801
           D +  LK   +  G
Sbjct: 662 DSVSELKQRVFING 675


>gi|109899270|ref|YP_662525.1| excinuclease ABC subunit B [Pseudoalteromonas atlantica T6c]
 gi|109701551|gb|ABG41471.1| Excinuclease ABC subunit B [Pseudoalteromonas atlantica T6c]
          Length = 669

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/662 (54%), Positives = 473/662 (71%), Gaps = 4/662 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y P+GDQP AI  L+ G+ S    Q LLGVTGSGKTFTMA VI  +QRP +++A
Sbjct: 5   FQLTSNYSPAGDQPKAIQALVDGLESGLAAQTLLGVTGSGKTFTMANVINEVQRPTLILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+N  I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++VSSVS IYG+G  +SY +M++  + GD + Q+++L  L + QY R 
Sbjct: 125 SATKALMERRDVVIVSSVSAIYGLGDPDSYMKMLLHFRQGDIMNQRDILRRLAEIQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD I+IFP+  E  A RV +F  ++E IS F PLTG   + V    I+
Sbjct: 185 DVAFERGTFRVRGDVIDIFPADSEREAVRVELFDEEVERISIFDPLTGAVEKTVARATIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A+++IK+ELK R  +L    +L+E QR+ QR  +D+EM++  G C 
Sbjct: 245 PKTHYVTPREKILDAVEHIKDELKERKAQLLSVNKLIEEQRISQRCQFDMEMMQELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PG+PPPTL +Y P D L+F+DESHVT+ QI  MY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRTPGDPPPTLIDYFPADGLMFIDESHVTVSQIGAMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+  + P TI VSATPG +EL +    IVEQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFDEFEQIAPQTIYVSATPGKYELAKTPDDIVEQVVRPTGLIDPEIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI        R+L+T LTKRM+EDL+EYL E N++ RY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLLSEIEKCVALNERVLVTTLTKRMSEDLSEYLDEHNVKARYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RIEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++N + ILYAD IT S+Q A+DET RRREKQ EHNKKHNI P  + + I +++D      
Sbjct: 545 HINGRAILYADRITGSMQRAMDETDRRREKQREHNKKHNIVPTQLNKPITDIMDVGEGSG 604

Query: 741 AATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                +   A+       +S  +    +  L K+M   A +L FE+AA +RDE++ L+  
Sbjct: 605 QGKVMLRKVAESGKKYNGMSAPELMKSIAELEKKMFQMAKDLEFEQAASLRDEVETLRKK 664

Query: 797 PY 798
             
Sbjct: 665 LV 666


>gi|304387358|ref|ZP_07369550.1| excision endonuclease subunit UvrB [Neisseria meningitidis ATCC
           13091]
 gi|304338609|gb|EFM04727.1| excision endonuclease subunit UvrB [Neisseria meningitidis ATCC
           13091]
          Length = 716

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/665 (54%), Positives = 480/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 50  SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 109

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 110 MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 169

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 170 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 229

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    
Sbjct: 230 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYT 289

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G 
Sbjct: 290 VFPSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGF 349

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 350 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 409

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 410 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 468

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 469 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 528

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 529 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 588

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 589 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 648

Query: 739 EDAATTNISIDAQQLSLS----KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+           ++ +S    ++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 649 EEDGGKGRRQGKNKVKVSEIHNEEDAVKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIK 708

Query: 795 SSPYF 799
               F
Sbjct: 709 EGLLF 713


>gi|269213500|ref|ZP_05982104.2| excinuclease ABC subunit B [Neisseria cinerea ATCC 14685]
 gi|269146269|gb|EEZ72687.1| excinuclease ABC subunit B [Neisseria cinerea ATCC 14685]
          Length = 746

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/665 (53%), Positives = 480/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 80  SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 139

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 140 MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 199

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 200 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSIQYE 259

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 260 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 319

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 320 VFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 379

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 380 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 439

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 440 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 498

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 499 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 558

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 559 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 618

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 619 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 678

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+           ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 679 EEDGGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIK 738

Query: 795 SSPYF 799
            +  F
Sbjct: 739 ENLLF 743


>gi|153854|gb|AAA27020.1| uvs402 protein [Streptococcus pneumoniae]
          Length = 668

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 16  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 75

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 76  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 135

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 136 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 195

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 196 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 255

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 256 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 315

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 316 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKKMLVNY 375

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 376 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 434

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 435 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 494

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 495 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 554

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 555 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 611

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 612 AVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 666


>gi|299136465|ref|ZP_07029648.1| excinuclease ABC, B subunit [Acidobacterium sp. MP5ACTX8]
 gi|298600980|gb|EFI57135.1| excinuclease ABC, B subunit [Acidobacterium sp. MP5ACTX8]
          Length = 663

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/660 (54%), Positives = 481/660 (72%), Gaps = 2/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P+GDQP AI++++ G+++ +K Q+LLGVTGSGKTFTMAKVI+ + RPA+++A
Sbjct: 3   FQLVSDYKPAGDQPRAISEIVSGLNAGDKDQVLLGVTGSGKTFTMAKVIQELNRPALILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAY+P  D YIEKES+IN+++D++R 
Sbjct: 63  HNKTLAAQLYHEFKQFFPNNAVEYFVSYYDYYQPEAYIPAGDLYIEKESTINDELDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D I+VSSVSCIYG+GS E+Y  M++ L+ G  ++++++   LV+  Y+R 
Sbjct: 123 SATRSLFERRDAIIVSSVSCIYGLGSPEAYYGMLLLLEKGQKIKRQDITRRLVEILYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD IE++P++ ++ A+R+ +FG++I+ +S+  PL G   +    + IY
Sbjct: 183 DVDFRRGTFRVRGDVIEVYPTY-DENAFRIELFGDEIDSLSQIDPLFGTVKQKYSRLPIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV       TA+  I  EL     +LEKEGRL+E+QR+ QR  +DLEM+++ G C 
Sbjct: 242 PKSHYVVAPERKKTAIDNILSELADWEAQLEKEGRLVESQRIHQRTRFDLEMIKSVGFCH 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +GR PGEPPPTL +Y P D L+F+DESHVT+PQ+ GM+ GD  RK  L +Y
Sbjct: 302 GIENYSRHFSGRLPGEPPPTLLDYFPRDFLIFIDESHVTVPQLHGMWHGDRSRKQNLVDY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPLRFEE+       + VSATPG +EL +  G++VEQIIRPTGLVDP VE
Sbjct: 362 GFRLPSAMDNRPLRFEEFETRTGQIVYVSATPGPYELTKSAGVVVEQIIRPTGLVDPQVE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EI   A Q  R+L+T LTKRMAEDL  Y  E  +R RYMHSE++TLE
Sbjct: 422 IRPVKGQIDDLLAEIRDRAAQNQRVLVTTLTKRMAEDLANYYTEVGVRCRYMHSEIETLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI+++RDLR G++DVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 482 RIKLLRDLRKGEYDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSQGSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++  + ILYAD +T S++ AIDET RRREKQ+ +N++H I PQ+V   I + +  +L  D
Sbjct: 542 HLEGRAILYADKMTDSMRRAIDETDRRREKQVAYNEEHGITPQTVIRSINDSLATVLKAD 601

Query: 741 AAT-TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
            A  T           ++ +   ++  L  +M  AA    FE+AA++RD +K L++  + 
Sbjct: 602 YADLTEEDATGMPDIATQAELDTYIAKLETEMREAAKKFEFEKAAKLRDTVKELRTKEFL 661


>gi|53717211|ref|YP_105572.1| excinuclease ABC subunit B [Burkholderia mallei ATCC 23344]
 gi|53721391|ref|YP_110376.1| excinuclease ABC subunit B [Burkholderia pseudomallei K96243]
 gi|121597246|ref|YP_991333.1| excinuclease ABC subunit B [Burkholderia mallei SAVP1]
 gi|126444347|ref|YP_001061605.1| excinuclease ABC subunit B [Burkholderia pseudomallei 668]
 gi|126456150|ref|YP_001074544.1| excinuclease ABC subunit B [Burkholderia pseudomallei 1106a]
 gi|166999231|ref|ZP_02265072.1| excinuclease ABC, B subunit [Burkholderia mallei PRL-20]
 gi|167722431|ref|ZP_02405667.1| excinuclease ABC subunit B [Burkholderia pseudomallei DM98]
 gi|167741413|ref|ZP_02414187.1| excinuclease ABC subunit B [Burkholderia pseudomallei 14]
 gi|167818595|ref|ZP_02450275.1| excinuclease ABC subunit B [Burkholderia pseudomallei 91]
 gi|167826973|ref|ZP_02458444.1| excinuclease ABC subunit B [Burkholderia pseudomallei 9]
 gi|167848488|ref|ZP_02473996.1| excinuclease ABC subunit B [Burkholderia pseudomallei B7210]
 gi|167905424|ref|ZP_02492629.1| excinuclease ABC subunit B [Burkholderia pseudomallei NCTC 13177]
 gi|167913717|ref|ZP_02500808.1| excinuclease ABC subunit B [Burkholderia pseudomallei 112]
 gi|167921658|ref|ZP_02508749.1| excinuclease ABC subunit B [Burkholderia pseudomallei BCC215]
 gi|226199184|ref|ZP_03794745.1| excinuclease ABC, B subunit [Burkholderia pseudomallei Pakistan 9]
 gi|237510637|ref|ZP_04523352.1| excinuclease ABC, B subunit [Burkholderia pseudomallei MSHR346]
 gi|242313742|ref|ZP_04812759.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1106b]
 gi|254174417|ref|ZP_04881079.1| excinuclease ABC, B subunit [Burkholderia mallei ATCC 10399]
 gi|254187176|ref|ZP_04893690.1| excinuclease ABC, B subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|254198958|ref|ZP_04905376.1| excinuclease ABC, B subunit [Burkholderia pseudomallei S13]
 gi|254200366|ref|ZP_04906731.1| excinuclease ABC, B subunit [Burkholderia mallei FMH]
 gi|254204391|ref|ZP_04910744.1| excinuclease ABC, B subunit [Burkholderia mallei JHU]
 gi|254264587|ref|ZP_04955452.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1710a]
 gi|254355744|ref|ZP_04972024.1| excinuclease ABC, B subunit [Burkholderia mallei 2002721280]
 gi|262192882|ref|YP_001078108.2| excinuclease ABC subunit B [Burkholderia mallei NCTC 10247]
 gi|81823801|sp|Q62CK6|UVRB_BURMA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|81824589|sp|Q63NE3|UVRB_BURPS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|52211805|emb|CAH37804.1| excinuclease ABC subunit B [Burkholderia pseudomallei K96243]
 gi|52423181|gb|AAU46751.1| excinuclease ABC, B subunit [Burkholderia mallei ATCC 23344]
 gi|121225044|gb|ABM48575.1| excinuclease ABC, B subunit [Burkholderia mallei SAVP1]
 gi|126223838|gb|ABN87343.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 668]
 gi|126229918|gb|ABN93331.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1106a]
 gi|147747978|gb|EDK55053.1| excinuclease ABC, B subunit [Burkholderia mallei FMH]
 gi|147753977|gb|EDK61041.1| excinuclease ABC, B subunit [Burkholderia mallei JHU]
 gi|148023837|gb|EDK82899.1| excinuclease ABC, B subunit [Burkholderia mallei 2002721280]
 gi|157934858|gb|EDO90528.1| excinuclease ABC, B subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|160695463|gb|EDP85433.1| excinuclease ABC, B subunit [Burkholderia mallei ATCC 10399]
 gi|169657130|gb|EDS88524.1| excinuclease ABC, B subunit [Burkholderia pseudomallei S13]
 gi|225928783|gb|EEH24809.1| excinuclease ABC, B subunit [Burkholderia pseudomallei Pakistan 9]
 gi|235002842|gb|EEP52266.1| excinuclease ABC, B subunit [Burkholderia pseudomallei MSHR346]
 gi|242136981|gb|EES23384.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1106b]
 gi|243064546|gb|EES46732.1| excinuclease ABC, B subunit [Burkholderia mallei PRL-20]
 gi|254215589|gb|EET04974.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1710a]
 gi|261834989|gb|ABO02091.2| excinuclease ABC, B subunit [Burkholderia mallei NCTC 10247]
          Length = 696

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/671 (54%), Positives = 482/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y PSGDQP AIA L++G+      Q LLGVTGSGKT+TMA  I  + RPA
Sbjct: 21  EGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANTIARLGRPA 80

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 81  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 140

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+++ L+  Q
Sbjct: 141 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREVIARLIAMQ 200

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG+  + +  
Sbjct: 201 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTGRVRQKIPR 260

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +DLEML+  
Sbjct: 261 FTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRFDLEMLQEL 320

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 321 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 380

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL+F E+       + VSATP  +E     G   EQ++RPTGLVD
Sbjct: 381 LVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYEQRVS-GQTAEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 440 PQIEVRPASTQVDDVLSEITERVKANERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N+K  I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA+ RD++  L
Sbjct: 620 YNADEARAELKEAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAQTRDQLALL 679

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 680 RERVFGANVGD 690


>gi|323351407|ref|ZP_08087063.1| excision endonuclease subunit UvrB [Streptococcus sanguinis VMC66]
 gi|322122631|gb|EFX94342.1| excision endonuclease subunit UvrB [Streptococcus sanguinis VMC66]
          Length = 662

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADTIT+S+QLAIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTITQSMQLAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMVKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|270292807|ref|ZP_06199018.1| excinuclease ABC, B subunit [Streptococcus sp. M143]
 gi|270278786|gb|EFA24632.1| excinuclease ABC, B subunit [Streptococcus sp. M143]
          Length = 662

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/655 (54%), Positives = 473/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K + K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDINSLNKHERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|258627130|ref|ZP_05721926.1| excinuclease ABC subunit B [Vibrio mimicus VM603]
 gi|258580648|gb|EEW05601.1| excinuclease ABC subunit B [Vibrio mimicus VM603]
          Length = 676

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/669 (54%), Positives = 478/669 (71%), Gaps = 11/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG    R++    I
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLARYTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATPG +EL +  G + +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPGEYELTKSCGEVADQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARVRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N K ILYAD+ITKS++ A+DET RRREKQ  +N++  I PQ +K  + ++++   + 
Sbjct: 545 RNINGKAILYADSITKSMRKAMDETERRREKQHAYNEQLGITPQPLKRSVKDIMELGDIA 604

Query: 740 DAATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            +                  A    L+ ++ +  +  L   M+  A NL FE AA+ RDE
Sbjct: 605 KSRKQKNSKVVPLAKVAEESATYRVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRDE 664

Query: 790 IKRLKSSPY 798
           I +L+    
Sbjct: 665 IHQLRQQFI 673


>gi|161504034|ref|YP_001571146.1| excinuclease ABC subunit B [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|189037996|sp|A9MJE1|UVRB_SALAR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|160865381|gb|ABX22004.1| hypothetical protein SARI_02127 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 673

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 475/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVEATVPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----- 733
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 734 ---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                   +    +       +L ++ K  +  +  L  QM   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGKGKGRSTAKTGIVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|326796004|ref|YP_004313824.1| UvrABC system protein B [Marinomonas mediterranea MMB-1]
 gi|326546768|gb|ADZ91988.1| UvrABC system protein B [Marinomonas mediterranea MMB-1]
          Length = 676

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/671 (56%), Positives = 482/671 (71%), Gaps = 11/671 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIA+L +GI +    Q LLGVTGSGKTFT+A VI   +RP I+MA
Sbjct: 5   FEVVSAYQPAGDQPTAIAKLTQGIEAGLAHQTLLGVTGSGKTFTVANVIANAKRPTIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYV  +DT+IEK++S+NE I++MR 
Sbjct: 65  HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G  +SY +M++ L  GD ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLEREDVIIVATVSAIYGLGDPQSYLKMMLHLDRGDRIDQRAVLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD I++FP+  ED A+R+ +F ++++ +S   PLT + IR V  I IY
Sbjct: 185 DLVFERGNFRVRGDVIDVFPADSEDTAFRIELFDDEVDNLSIIDPLTNKTIRKVPRITIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR T+  A++ IK EL  RL +L+   +L+E QRLEQR  YDLEM++  G C 
Sbjct: 245 PKTHYVTPRETIVDAIERIKTELDQRLEQLKSLNKLVELQRLEQRTNYDLEMMQELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P ++LL +DESHVT+PQ+  MY+GD  RK  L EY
Sbjct: 305 GIENYSRYLSGRPEGSPPPTLFDYLPANALLVIDESHVTVPQVGAMYKGDRSRKENLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEEW  ++P TI VSATPG +E E  Q  +VEQI+RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPMRFEEWESIKPQTIFVSATPGKYEAEH-QDWVVEQIVRPTGLIDPEVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EINL    G RIL+T LTKRMAEDLT+YLYE  IRVRY+HS++ T+E
Sbjct: 424 IRPVATQVDDLLSEINLRLPTGERILVTTLTKRMAEDLTDYLYEHGIRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 484 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILYAD IT S+  AI+ET RRR KQ   N++H I P+ + + + ++++      
Sbjct: 544 NVNGKAILYADRITGSMGRAIEETDRRRVKQQAFNEEHGIVPKGITKSVEDIMEGAYNPG 603

Query: 741 AAT---------TNISIDAQQLSLSK-KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           A              S D Q  S+    + +  +  L+K M  A++NL FE AA  RD+I
Sbjct: 604 AGKGRGKQTRKVAEASKDYQVESMDDVAEVRKAIIKLQKDMMEASENLQFELAAGYRDQI 663

Query: 791 KRLKSSPYFQG 801
           + L+      G
Sbjct: 664 RVLQKKLKEVG 674


>gi|315613251|ref|ZP_07888161.1| excision endonuclease subunit UvrB [Streptococcus sanguinis ATCC
           49296]
 gi|315314813|gb|EFU62855.1| excision endonuclease subunit UvrB [Streptococcus sanguinis ATCC
           49296]
          Length = 662

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQKAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|169833714|ref|YP_001694670.1| excinuclease ABC subunit B [Streptococcus pneumoniae Hungary19A-6]
 gi|238688299|sp|B1IC35|UVRB_STRPI RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|168996216|gb|ACA36828.1| excinuclease ABC, B subunit [Streptococcus pneumoniae Hungary19A-6]
          Length = 662

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+TI QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDITSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|206560662|ref|YP_002231427.1| excinuclease ABC subunit B [Burkholderia cenocepacia J2315]
 gi|198036704|emb|CAR52603.1| excinuclease ABC subunit B [Burkholderia cenocepacia J2315]
          Length = 696

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/671 (54%), Positives = 484/671 (72%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 21  EGSPFQLYQPYPPAGDQPTAIDTLVEGVGDGLAFQTLLGVTGSGKTFTMANTIARLGRPA 80

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 81  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 140

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 141 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQRDVIARLIAMQ 200

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 201 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKIPR 260

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK+EL+ RL    +EG+L+EAQRLEQR  +DLEML+  
Sbjct: 261 FTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHREGKLVEAQRLEQRTRFDLEMLQEL 320

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PG+PPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 321 GFCKGIENYSRHFSGAAPGDPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 380

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ++RPTGLVD
Sbjct: 381 LVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSATPADYE-KRVTGQIAEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A +QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 440 PEIEVRPASSQVDDVLTEINARVKAGERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYAD +T+S++ AI ET RRR KQ+ +N+K  I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGKAILYADNMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA  RD++  L
Sbjct: 620 YNADDARAELKEAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAAATRDQLAVL 679

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 680 RERVFGANVGD 690


>gi|24379265|ref|NP_721220.1| excinuclease ABC subunit B [Streptococcus mutans UA159]
 gi|81844376|sp|Q8CWX7|UVRB_STRMU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|24377182|gb|AAN58526.1|AE014922_1 excinuclease ABC (subunit B); helicase subunit of the DNA excision
           repair complex [Streptococcus mutans UA159]
          Length = 663

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/660 (53%), Positives = 476/660 (72%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           KD   F + + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI+ + +P
Sbjct: 5   KDNNQFHLVSKYEPSGDQPEAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+    + + +LL+ LV  
Sbjct: 125 DKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPSQEISRDQLLNDLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGRVLGEVD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I+  +H++T    +  A+  I++E+K ++   E EG+L+EAQR+ QR  YD+EML  
Sbjct: 245 HLAIFPATHFMTNDEHMEVAIAKIQKEMKEQVRLFEAEGKLIEAQRIRQRTEYDVEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTSGVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKE 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L  YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ    ++EQIIRPTGL+
Sbjct: 365 MLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQT-DTVIEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R    Q++D+  EIN  A +G R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPTMGQMDDLLGEINTRADKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN    VI+YADT+T+S++ AIDET RRR+ Q+ +N++H I PQ++K+ I ++I  
Sbjct: 544 GRAARNSQGHVIMYADTVTQSMRRAIDETHRRRQIQMAYNEEHGIIPQTIKKDIRDLIAI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               D+     ++D    +++K + +  +K L+KQM  AA+ L+FE AA+IRD +  LK+
Sbjct: 604 TKANDSEVAEEAVD--YNAMTKSERQEAIKKLQKQMQEAAELLDFELAAQIRDMVLELKA 661


>gi|127512992|ref|YP_001094189.1| excinuclease ABC subunit B [Shewanella loihica PV-4]
 gi|126638287|gb|ABO23930.1| Excinuclease ABC subunit B [Shewanella loihica PV-4]
          Length = 672

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/667 (54%), Positives = 469/667 (70%), Gaps = 7/667 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F + + Y P+GDQP AI QL+ G+ +    Q LLGVTGSGKTFT+A VI+ MQRP I+
Sbjct: 4   SAFDLVSQYAPAGDQPGAIKQLVDGLDAGLANQTLLGVTGSGKTFTIANVIKQMQRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP T+T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  ESY +M++ L+ GD + Q+E+L  L + QY 
Sbjct: 124 RLSATKALLERRDVVLIASVSAIYGLGDPESYMKMLLHLRQGDFMGQREILQRLSELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGTFRV G+ I+IFP+  +  A RV +F ++I+ +S F PLTG  ++ +    
Sbjct: 184 RNDIELDRGTFRVRGEVIDIFPAESDKQAIRVELFDDEIDRLSLFDPLTGHILQRIARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A + IK+EL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKTHYVTPREKILAATEDIKQELRERKQYLLDNNKLIEAQRISERVQYDIEMMTELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK  L 
Sbjct: 304 CSGIENYSRYLSGRRPGEGPPTLLDYLPADGLLILDESHVTVPQIGAMYKGDRSRKMNLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP  +EL++  G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFESLMPQTIFVSATPAQYELDKSDGEIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    QV+D+  E N       R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ T
Sbjct: 424 IEVRPVAIQVDDLLSEANKRVAVNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD +TKS+  AI ET RRREKQ E N  + I P+ V +KI +V+D    
Sbjct: 544 ARNVNGKVILYADNMTKSMAKAIGETERRREKQREFNLANGITPKGVSKKIADVMDLGDY 603

Query: 739 EDAATTNI-------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            +     +                        +  L K+MH  A +L FE+AA +RDE+ 
Sbjct: 604 NEHTAKVLPKYQKVAESRTTYAKQDASSLSHQIDELEKRMHQHARDLEFEQAAALRDEVL 663

Query: 792 RLKSSPY 798
            L+ +  
Sbjct: 664 ALREALI 670


>gi|226324390|ref|ZP_03799908.1| hypothetical protein COPCOM_02171 [Coprococcus comes ATCC 27758]
 gi|225206838|gb|EEG89192.1| hypothetical protein COPCOM_02171 [Coprococcus comes ATCC 27758]
          Length = 691

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/682 (52%), Positives = 480/682 (70%), Gaps = 5/682 (0%)

Query: 116 LLKNGKIWTPHRSWSINNHS--KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLL 173
             + G   +   S  + + S  +    F+++  Y P+GDQP AIA+L+KG     + Q L
Sbjct: 7   NAEKGHSQSADNSQLLAHKSSPQGGHAFKLKAPYEPTGDQPQAIAELVKGFKEGNQCQTL 66

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           LGVTGSGKTFTMA VI+ +Q+P +V+A NK LAAQLY EFK  FP NAVEYFVSYYDYYQ
Sbjct: 67  LGVTGSGKTFTMANVIQQLQKPTLVIAHNKTLAAQLYGEFKEMFPDNAVEYFVSYYDYYQ 126

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
           PEAYVP +DTYI K+S+IN++ID++RHSAT +L ERND I+V+SVSCIYG+GS   Y +M
Sbjct: 127 PEAYVPSSDTYIAKDSAINDEIDKLRHSATAALSERNDVIIVASVSCIYGLGSPIDYKEM 186

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
           ++ L+ G   ++ E+L  LV+ QY R D+   RGTFRV GD +EIFP++ E +A+RV  F
Sbjct: 187 VISLRPGMIKDRDEVLKKLVEIQYDRNDMDFKRGTFRVRGDVVEIFPAYSEKIAYRVEFF 246

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
           G++I+ I+E   LTG+ +  +  + I+  SHYV  +  +  A++ I+EEL+ ++   + E
Sbjct: 247 GDEIDRITEIDTLTGEVLNVIGHVAIFPASHYVVSKENMERAIREIEEELEQQIRYFKGE 306

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
            +LLEAQR+ +R  +D+EM+  TG C  IENYSR+LTG+  GEPP TL +Y P+D L+ +
Sbjct: 307 DKLLEAQRISERTNFDIEMMRETGFCSGIENYSRHLTGQKAGEPPCTLIDYFPDDFLIMI 366

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
           DESH TIPQI  MY GD  RK TL +YGFRLPS  DNRPL F E+       + VSATPG
Sbjct: 367 DESHKTIPQIGAMYHGDQSRKTTLVDYGFRLPSAKDNRPLSFGEFESKIDQVLFVSATPG 426

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E E  + +  EQ+IRPTGL+DP VE+R    Q++D+  E+N    +  ++L+T LTKR
Sbjct: 427 EYE-ESHELLRAEQVIRPTGLLDPEVEVRPIEGQIDDLISEVNKETAKKNKVLITTLTKR 485

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAEDLT+Y+ E  IRV+Y+HS++ TLER EIIRD+RL  FDVLVGINLLREGLDIPE  L
Sbjct: 486 MAEDLTDYMRELGIRVKYLHSDIDTLERTEIIRDMRLDVFDVLVGINLLREGLDIPEITL 545

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           VAILDADKEGFLRS+TSLIQTIGRAARN    VI+YAD +T S+++AIDET RRRE Q++
Sbjct: 546 VAILDADKEGFLRSETSLIQTIGRAARNAEGHVIMYADNMTDSMRMAIDETMRRREIQMK 605

Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
           +N++H I PQ++K+ + ++I       A    +  D +  S+S  + +  +K L KQM  
Sbjct: 606 YNEEHGITPQTIKKSVRDLISISKKVAAEEMKLEKDPE--SMSAAELEKLIKKLEKQMKK 663

Query: 774 AADNLNFEEAARIRDEIKRLKS 795
           AA  LNFE AA +RD++  LK 
Sbjct: 664 AAAELNFEAAAELRDKLIELKK 685


>gi|332366708|gb|EGJ44449.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK1059]
          Length = 662

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ ELK +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELKEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI   A++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEITARAEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVCLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|92113956|ref|YP_573884.1| excinuclease ABC subunit B [Chromohalobacter salexigens DSM 3043]
 gi|91797046|gb|ABE59185.1| Excinuclease ABC subunit B [Chromohalobacter salexigens DSM 3043]
          Length = 676

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/675 (56%), Positives = 482/675 (71%), Gaps = 13/675 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++Q+ Y P+GDQPAAI  L+KG ++    Q LLGVTGSGKTFTMA V+E +QRP IV
Sbjct: 3   KPFRIQSQYRPAGDQPAAIDGLIKGFNAGLAHQTLLGVTGSGKTFTMANVVERLQRPTIV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++M
Sbjct: 63  MAPNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++V SVS IYG+G  + Y +M +    G+ ++Q+  L  L + QY 
Sbjct: 123 RLSATKALLERRDALIVVSVSAIYGLGDPDQYLKMRLHFNRGELIDQRTFLRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RGT+RV GD I+IFP+  ED A RV +F ++IE IS F PLTG+    V  + 
Sbjct: 183 RNDMDFRRGTYRVRGDVIDIFPADAEDEAVRVELFDDEIETISLFDPLTGEVRDKVPRMT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYVTPR T+  A++ IK EL  RL  + +  +L+EAQRLEQR  YD+EM+   G 
Sbjct: 243 IYPKSHYVTPRETILAAVEDIKVELADRLAWMRQHDKLVEAQRLEQRTLYDIEMMLELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPT F+Y+P+D+LLF+DESHV++PQ+ GMY+GD  RK TL 
Sbjct: 303 CNGIENYSRYLSGREPGEAPPTFFDYLPDDTLLFIDESHVSVPQVGGMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP++FEEW  + P T  VSATPG +E E   G +VEQ++RPTGLVDP 
Sbjct: 363 EYGFRLPSALDNRPMKFEEWERICPQTAFVSATPGPYEAEHA-GQVVEQVVRPTGLVDPE 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R A+TQV+D+  EI L    G R+L+T LTKRMAEDLTEYL E +IRVRY+HS++ T
Sbjct: 422 IEVRPAQTQVDDLLSEIKLRTDVGERVLVTTLTKRMAEDLTEYLDEHDIRVRYLHSDIDT 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ERIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 482 VERIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN + K ILY D +T S+Q AIDET RRR KQ+  N++H I P +V + + ++++    
Sbjct: 542 ARNAHGKAILYGDRVTNSMQRAIDETERRRNKQIAFNEEHGITPTTVTKSVADIMEGAQT 601

Query: 739 EDAATTNISIDAQQLS------------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
                     D +               +        +  L   MH AA NL FEEAAR+
Sbjct: 602 PGKKVGRKRPDKRVAEAPGDYSSEQLNQMDAAGLTREIGKLEDAMHEAAQNLEFEEAARL 661

Query: 787 RDEIKRLKSSPYFQG 801
           RD+++ LK+     G
Sbjct: 662 RDQLQSLKARLIELG 676


>gi|270158508|ref|ZP_06187165.1| excinuclease ABC subunit B [Legionella longbeachae D-4968]
 gi|289166654|ref|YP_003456792.1| excinuclease ABC subunit B [Legionella longbeachae NSW150]
 gi|269990533|gb|EEZ96787.1| excinuclease ABC subunit B [Legionella longbeachae D-4968]
 gi|288859827|emb|CBJ13808.1| excinuclease ABC subunit B [Legionella longbeachae NSW150]
          Length = 663

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/659 (55%), Positives = 481/659 (72%), Gaps = 1/659 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++  D+ P+GDQP AIA L+ G+ S    Q LLGVTGSGKTFT+A VI+AM+RPA++M
Sbjct: 4   LFKIYADFQPAGDQPTAIASLIDGLKSGLAKQTLLGVTGSGKTFTIAHVIQAMRRPALIM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSIN+ I++MR
Sbjct: 64  APNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINDHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+V++VS IYG+G  +SY +M++ L  G+  +Q+++L  L + QY R
Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMVLHLSRGEQSDQRKILRRLAEMQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +  + RG FRV GD I+IFP+  E  A RV +F +++E I++F PLTG+ +R +  + +
Sbjct: 184 TNFALERGQFRVHGDVIDIFPADSEKEAIRVELFDDEVENIAQFDPLTGEILRRLPRVTV 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  +HYVTPR  +   + ++KEEL+ RL E   + +L+EAQRLEQR  +D+EM+   G C
Sbjct: 244 FPKTHYVTPRERILQTVDWVKEELQERLAEFNAQNKLVEAQRLEQRTCFDIEMMLELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P+++LL +DESHVT+PQI GMYRGD  RK TL +
Sbjct: 304 SGIENYSRYLSGREAGEPPPTLFDYLPDEALLIIDESHVTVPQIGGMYRGDRSRKETLVQ 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+    P TI +SATPG +E E     + EQ++RPTGL+DP V
Sbjct: 364 YGFRLPSALDNRPLRFEEFEARSPQTIYISATPGPYEQEHSDN-VAEQVVRPTGLIDPEV 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR  RTQV+D+  EI    +   RIL+T LTKRMAEDLT+YL E  I+VRY+HS++ T+
Sbjct: 423 EIRPVRTQVDDLMSEIRQVIRHNGRILVTTLTKRMAEDLTDYLNEHGIKVRYLHSDIDTV 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAA
Sbjct: 483 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSDRSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  + ILYAD IT S+Q A+DET RRREKQ   N+ H I P+ + + I ++++     
Sbjct: 543 RNMKGRAILYADKITGSMQRALDETNRRREKQQAFNEAHGITPKGINKSIADIMEGAFQG 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
                      +    S ++   H+ +L KQM+L A N+ FE AA++RDE   LK    
Sbjct: 603 KRKVAVAESVPEYKHWSTQELIKHINTLEKQMYLHAKNMEFEAAAKVRDEYLLLKKQLV 661


>gi|15903161|ref|NP_358711.1| excinuclease ABC subunit B [Streptococcus pneumoniae R6]
 gi|116516486|ref|YP_816567.1| excinuclease ABC subunit B [Streptococcus pneumoniae D39]
 gi|30913391|sp|Q8DPK7|UVRB_STRR6 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|122278547|sp|Q04K81|UVRB_STRP2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|15458744|gb|AAK99921.1| Exonuclease ABC - subunit B [Streptococcus pneumoniae R6]
 gi|116077062|gb|ABJ54782.1| excinuclease ABC, B subunit [Streptococcus pneumoniae D39]
          Length = 662

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|322373405|ref|ZP_08047941.1| excinuclease ABC subunit B [Streptococcus sp. C150]
 gi|321278447|gb|EFX55516.1| excinuclease ABC subunit B [Streptococcus sp. C150]
          Length = 668

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/660 (53%), Positives = 481/660 (72%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K+   F + + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI+ + +P
Sbjct: 10  KEDNQFHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIQRVNKP 69

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYD+YQPEAYVP +DTYIEK+SS+N++I
Sbjct: 70  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSVNDEI 129

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT +LLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  
Sbjct: 130 DKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDI 189

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  VE
Sbjct: 190 QFERNDIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRICEIESLTGRNLGKVE 249

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H++T    +  A+K I  E++ ++ + E EG+L+EAQR+ QR  YD+EML  
Sbjct: 250 HLVLFPATHFMTNEEHMEEAIKNIMAEMEAQVKQFEAEGKLIEAQRIRQRTEYDVEMLRE 309

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR  GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 310 MGYTNGVENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKK 369

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +VEQIIRPTGL+
Sbjct: 370 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLL 428

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R    Q++D+  EIN+  ++G R+ +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 429 DPEVEVRPTMGQMDDLLGEINVRTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSD 488

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 489 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 548

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN    VI+YAD IT+S+Q A+DET RRRE Q+ +NK+H I PQ++K++I ++I  
Sbjct: 549 GRAARNSEGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGIVPQTIKKEIRDLISI 608

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               +A     ++D    +++KK+ +  +K L+KQMH AA+ L+FE AA+IRD +  LKS
Sbjct: 609 TKANEAEVAEDTVD--YSAMNKKERQEAVKKLQKQMHEAAELLDFELAAQIRDMVLELKS 666


>gi|195978380|ref|YP_002123624.1| excinuclease ABC subunit B [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|238689826|sp|B4U3P4|UVRB_STREM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|195975085|gb|ACG62611.1| UvrB [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 663

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/660 (53%), Positives = 476/660 (72%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +D   F++ + Y PSGDQP AI  L+  I S EK Q+LLG TG+GKT+TM++VI  + +P
Sbjct: 5   RDFKAFKLVSKYAPSGDQPQAIEALVDNIESGEKAQILLGATGTGKTYTMSQVISKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL++LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNALVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ + + +
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKVLGDAD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML  
Sbjct: 245 HLVLFPATHFVTNDEHMEQSISKIQAELADQLKLFEAEGKLLEAQRLRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRSAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDKARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ    IVEQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQT-DTIVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R +  Q++D+  EINL  ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRVERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN +  VI+YAD +T S+Q AIDET RRR  Q+ +N++H I PQ++K+ I ++I  
Sbjct: 544 GRAARNADGHVIMYADRMTDSMQRAIDETARRRAIQMAYNEEHGIIPQTIKKDIRDLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               +A  T    +    S+++ + +  +K L+K M  AA+ L+FE AA++RD I  LK+
Sbjct: 604 SRAVEAKATE--AETNYESMTRSERQEAIKQLQKNMQEAAELLDFELAAQLRDLILELKA 661


>gi|170720725|ref|YP_001748413.1| excinuclease ABC subunit B [Pseudomonas putida W619]
 gi|169758728|gb|ACA72044.1| excinuclease ABC, B subunit [Pseudomonas putida W619]
          Length = 671

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/670 (55%), Positives = 487/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI Q+++GI +    Q LLGVTGSGKTF++A VI  +QRP +
Sbjct: 1   MSEFQLVTRFQPAGDQPEAIRQMVEGIEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   R TFRV GD I+IFP+  +  A R+ +F +++E I+ F PLTG+  R +   
Sbjct: 181 TRNEMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVFRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A++ IK+ELK RL  L K  +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLLEAVEGIKDELKERLEYLHKANKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTL++Y+P+D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPAGAPPPTLYDYLPDDALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG +E E   G +VEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWESVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R A TQV+D+  EI    +QG R+L T LTKRMAEDL++YL + ++RVRY+HS++ 
Sbjct: 420 QVEVRPALTQVDDLLSEIRKRVEQGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S+Q AIDET RRREKQ+  N+ + I P+ V + I ++++   
Sbjct: 540 AARNLNGRAILYADQITGSMQRAIDETERRREKQIAFNQANGIVPKGVVKDITDIMEGAT 599

Query: 738 LED---------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +           A     S   +    +  +    +K L ++M   A +L FE AA++RD
Sbjct: 600 VPGSRSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EITKLRERLI 669


>gi|227517725|ref|ZP_03947774.1| excinuclease ABC subunit B [Enterococcus faecalis TX0104]
 gi|229546598|ref|ZP_04435323.1| excinuclease ABC subunit B [Enterococcus faecalis TX1322]
 gi|255971219|ref|ZP_05421805.1| excinuclease ABC subunit B [Enterococcus faecalis T1]
 gi|255973842|ref|ZP_05424428.1| excinuclease ABC subunit B [Enterococcus faecalis T2]
 gi|256617648|ref|ZP_05474494.1| excinuclease ABC [Enterococcus faecalis ATCC 4200]
 gi|256761529|ref|ZP_05502109.1| excinuclease ABC [Enterococcus faecalis T3]
 gi|256854373|ref|ZP_05559737.1| excinuclease ABC subunit B [Enterococcus faecalis T8]
 gi|257083684|ref|ZP_05578045.1| excinuclease ABC [Enterococcus faecalis Fly1]
 gi|257086119|ref|ZP_05580480.1| excinuclease ABC [Enterococcus faecalis D6]
 gi|257089190|ref|ZP_05583551.1| excinuclease ABC subunit B [Enterococcus faecalis CH188]
 gi|257415332|ref|ZP_05592326.1| excinuclease ABC [Enterococcus faecalis AR01/DG]
 gi|307276260|ref|ZP_07557388.1| excinuclease ABC subunit B [Enterococcus faecalis TX2134]
 gi|307284475|ref|ZP_07564637.1| excinuclease ABC subunit B [Enterococcus faecalis TX0860]
 gi|307289544|ref|ZP_07569489.1| excinuclease ABC subunit B [Enterococcus faecalis TX0109]
 gi|307296216|ref|ZP_07576044.1| excinuclease ABC subunit B [Enterococcus faecalis TX0411]
 gi|312900357|ref|ZP_07759668.1| excinuclease ABC subunit B [Enterococcus faecalis TX0470]
 gi|312904216|ref|ZP_07763378.1| excinuclease ABC subunit B [Enterococcus faecalis TX0635]
 gi|227074830|gb|EEI12793.1| excinuclease ABC subunit B [Enterococcus faecalis TX0104]
 gi|229308288|gb|EEN74275.1| excinuclease ABC subunit B [Enterococcus faecalis TX1322]
 gi|255962237|gb|EET94713.1| excinuclease ABC subunit B [Enterococcus faecalis T1]
 gi|255966714|gb|EET97336.1| excinuclease ABC subunit B [Enterococcus faecalis T2]
 gi|256597175|gb|EEU16351.1| excinuclease ABC [Enterococcus faecalis ATCC 4200]
 gi|256682780|gb|EEU22475.1| excinuclease ABC [Enterococcus faecalis T3]
 gi|256709933|gb|EEU24977.1| excinuclease ABC subunit B [Enterococcus faecalis T8]
 gi|256991714|gb|EEU79016.1| excinuclease ABC [Enterococcus faecalis Fly1]
 gi|256994149|gb|EEU81451.1| excinuclease ABC [Enterococcus faecalis D6]
 gi|256998002|gb|EEU84522.1| excinuclease ABC subunit B [Enterococcus faecalis CH188]
 gi|257157160|gb|EEU87120.1| excinuclease ABC [Enterococcus faecalis ARO1/DG]
 gi|295114021|emb|CBL32658.1| Excinuclease ABC subunit B [Enterococcus sp. 7L76]
 gi|306496090|gb|EFM65672.1| excinuclease ABC subunit B [Enterococcus faecalis TX0411]
 gi|306499505|gb|EFM68877.1| excinuclease ABC subunit B [Enterococcus faecalis TX0109]
 gi|306503152|gb|EFM72406.1| excinuclease ABC subunit B [Enterococcus faecalis TX0860]
 gi|306507060|gb|EFM76202.1| excinuclease ABC subunit B [Enterococcus faecalis TX2134]
 gi|310632312|gb|EFQ15595.1| excinuclease ABC subunit B [Enterococcus faecalis TX0635]
 gi|311292545|gb|EFQ71101.1| excinuclease ABC subunit B [Enterococcus faecalis TX0470]
 gi|315025740|gb|EFT37672.1| excinuclease ABC subunit B [Enterococcus faecalis TX2137]
 gi|315029876|gb|EFT41808.1| excinuclease ABC subunit B [Enterococcus faecalis TX4000]
 gi|315031473|gb|EFT43405.1| excinuclease ABC subunit B [Enterococcus faecalis TX0017]
 gi|315151539|gb|EFT95555.1| excinuclease ABC subunit B [Enterococcus faecalis TX0012]
 gi|315159997|gb|EFU04014.1| excinuclease ABC subunit B [Enterococcus faecalis TX0312]
 gi|315164647|gb|EFU08664.1| excinuclease ABC subunit B [Enterococcus faecalis TX1302]
 gi|315173029|gb|EFU17046.1| excinuclease ABC subunit B [Enterococcus faecalis TX1346]
 gi|315578043|gb|EFU90234.1| excinuclease ABC subunit B [Enterococcus faecalis TX0630]
 gi|327534350|gb|AEA93184.1| excision endonuclease subunit UvrB [Enterococcus faecalis OG1RF]
          Length = 665

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/661 (53%), Positives = 475/661 (71%), Gaps = 1/661 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    F + + Y P+GDQPAAIA+L+ G+   EK Q+LLG TG+GKTFT++ VI+ + +P
Sbjct: 5   ETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCI+G+G    YSQ +V L++G  +++ ELL SLV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E   LTG+ +   E
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I+  +H+VT    +  A+  I+EEL+ RL  L  E +LLEAQRLEQR  YD+EM+  
Sbjct: 245 HVAIFPATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    IENYSR++ GR  GEPP TL ++ P+D LL +DESHVT+PQI GMY GD  RK 
Sbjct: 305 MGYTSGIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +V+QIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VEIR    Q++D+  EI+   ++  R+ +T LTK+MAEDLT+Y  E  ++V+Y+HS+
Sbjct: 424 DPEVEIRPIMGQIDDLVGEIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG+FD+L+GINLLREG+D+PE  L+AILDADKEGFLRS+ SL+QT+
Sbjct: 484 IKTLERTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTM 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN   KVI+YAD IT S+Q A+DET RRR  Q  +N++H I P+++ ++I ++I  
Sbjct: 544 GRAARNAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               D   T + +D     LS+++    L  L ++M  AA  L+FE AA +RD I  LK+
Sbjct: 604 SKTADKDETVVQLDKSYEDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKA 663

Query: 796 S 796
           +
Sbjct: 664 A 664


>gi|66045214|ref|YP_235055.1| excinuclease ABC subunit B [Pseudomonas syringae pv. syringae
           B728a]
 gi|75502487|sp|Q4ZV05|UVRB_PSEU2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|63255921|gb|AAY37017.1| Excinuclease ABC, B subunit [Pseudomonas syringae pv. syringae
           B728a]
 gi|330941972|gb|EGH44669.1| excinuclease ABC subunit B [Pseudomonas syringae pv. pisi str.
           1704B]
 gi|330974324|gb|EGH74390.1| excinuclease ABC subunit B [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 671

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/670 (55%), Positives = 486/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +
Sbjct: 1   MSEFQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+I+P+  +  A RV +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLIEAMENIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G IVEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR A TQV+D+  EI+  A    R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ 
Sbjct: 420 QIEIRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S++ AI ET RRREKQ+  N +H I P+ V + + ++++   
Sbjct: 540 AARNLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGAT 599

Query: 738 LEDAATTNISIDAQQLS---------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  + +      A+             S  +    ++ L ++M+  A +L FE AA++RD
Sbjct: 600 VPGSRSKKRKGMAKAAEENARYENELRSPSEINKRIRQLEEKMYQLARDLEFEAAAQMRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EIGKLRERLL 669


>gi|332361037|gb|EGJ38841.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK1056]
          Length = 662

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLGIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALQDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|289168043|ref|YP_003446312.1| excinuclease ABC-subunit B [Streptococcus mitis B6]
 gi|288907610|emb|CBJ22447.1| excinuclease ABC-subunit B [Streptococcus mitis B6]
          Length = 662

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   E EG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQTELEEQLAVFENEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A     + +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEENKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|76818802|ref|YP_337072.1| excinuclease ABC subunit B [Burkholderia pseudomallei 1710b]
 gi|124381502|ref|YP_001023842.1| excinuclease ABC subunit B [Burkholderia mallei NCTC 10229]
 gi|76583275|gb|ABA52749.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1710b]
 gi|124289522|gb|ABM98791.1| excinuclease ABC, B subunit [Burkholderia mallei NCTC 10229]
          Length = 707

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/671 (54%), Positives = 482/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y PSGDQP AIA L++G+      Q LLGVTGSGKT+TMA  I  + RPA
Sbjct: 32  EGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANTIARLGRPA 91

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 92  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 151

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+++ L+  Q
Sbjct: 152 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREVIARLIAMQ 211

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG+  + +  
Sbjct: 212 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTGRVRQKIPR 271

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +DLEML+  
Sbjct: 272 FTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRFDLEMLQEL 331

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 332 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 391

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL+F E+       + VSATP  +E     G   EQ++RPTGLVD
Sbjct: 392 LVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYEQRVS-GQTAEQVVRPTGLVD 450

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 451 PQIEVRPASTQVDDVLSEITERVKANERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 510

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 511 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 570

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N+K  I P+ V ++I ++ID +
Sbjct: 571 RAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGV 630

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA+ RD++  L
Sbjct: 631 YNADEARAELKEAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAQTRDQLALL 690

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 691 RERVFGANVGD 701


>gi|167760010|ref|ZP_02432137.1| hypothetical protein CLOSCI_02382 [Clostridium scindens ATCC 35704]
 gi|167662303|gb|EDS06433.1| hypothetical protein CLOSCI_02382 [Clostridium scindens ATCC 35704]
          Length = 662

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/650 (53%), Positives = 472/650 (72%), Gaps = 3/650 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++++ Y P+GDQP AI QL+KG     + Q LLGVTGSGKTFTMA +I  + +P ++
Sbjct: 5   KIFKLESPYKPTGDQPQAIEQLVKGFREGNQCQTLLGVTGSGKTFTMANIIAQLNKPTLI 64

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQLY EFK FFP N+VEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID++
Sbjct: 65  IAHNKTLAAQLYGEFKEFFPSNSVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDKL 124

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSAT +L ER D I+V+SVSCIYG+GS   Y  M++ L+ G   ++ E++  L++ QY+
Sbjct: 125 RHSATAALSERRDVIIVASVSCIYGLGSPIDYQNMVISLRPGMEKDRDEVIHKLIEIQYE 184

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R ++   RGTFRV GD +EI P+  E +A+R+  FG++++ I+E   LTG+    +  + 
Sbjct: 185 RNEMDFKRGTFRVRGDVLEIIPALTEGMAYRIEFFGDEVDRITEVDVLTGEIKNELNHVA 244

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SHYV  + ++  A++ I+EEL+ ++   + EG+LLEAQR+ +R  +D+EM+  TG 
Sbjct: 245 IFPASHYVVSKESMERAIRGIEEELEDQIHYFKSEGKLLEAQRISERTNFDIEMMRETGF 304

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+LTG  PG+PP TL +Y P+D ++ +DESH T+PQI GMY GD  RK+TL 
Sbjct: 305 CSGIENYSRHLTGLEPGQPPHTLIDYFPDDFIMMIDESHKTVPQIGGMYHGDQSRKSTLV 364

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS  DNRPL FEE+       + VSATPG +E EQ + +  EQ+IRPTGL+DP 
Sbjct: 365 EYGFRLPSAKDNRPLSFEEFESKIDQVMFVSATPGPYE-EQHELLRAEQVIRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R    Q++D+  E+N    +  +IL+T LTKRMAEDLT+Y+ E  IRVRY+HS++ T
Sbjct: 424 VEVRPVEGQIDDLVGEVNKEIAKKNKILITTLTKRMAEDLTDYMRELGIRVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER EI+RD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRA
Sbjct: 484 LERTEIVRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN    VI+YADTIT S++LA+DET RRR+ Q+E+N+ H I PQ++++ + ++I   + 
Sbjct: 544 ARNAEGHVIMYADTITDSMRLALDETERRRKVQMEYNEAHGITPQTIQKSVRDLI--AVS 601

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  A   + ++    S+S+K+ +   K L KQM  AA  LNFE AA +RD
Sbjct: 602 KKVAAEELRLEKDPESMSEKELEKLTKELTKQMKKAAAELNFEAAAELRD 651


>gi|114777054|ref|ZP_01452074.1| excinuclease ABC subunit B [Mariprofundus ferrooxydans PV-1]
 gi|114552575|gb|EAU55035.1| excinuclease ABC subunit B [Mariprofundus ferrooxydans PV-1]
          Length = 659

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/655 (58%), Positives = 493/655 (75%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++  D+ P GDQP AIA+L+KG+    + Q LLGVTGSGKT+TMA VIE  Q+P ++MA
Sbjct: 3   FKLAGDFTPRGDQPQAIAELVKGVGEGARHQTLLGVTGSGKTYTMACVIERTQKPTLIMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP++DTYIEK+S+INEQIDRMRH
Sbjct: 63  PNKTLAAQLYGEFKQFFPDNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINEQIDRMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATR+LLER D I+VSSVSCIYG+GS E+Y++M++ +++G   +Q+  ++ LV+ QY+R 
Sbjct: 123 AATRALLEREDVIIVSSVSCIYGLGSPEAYAEMLLYVEVGRETDQRAAVNKLVELQYQRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFR+ GD +E+FP+H ED A R+  FG+D++ IS F PLTG++I ++    I+
Sbjct: 183 DMDFHRGTFRLRGDVLEVFPAHAEDFAVRIEFFGDDVDAISRFDPLTGRRIESLHKYTIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VTPR  L  AM+ I+ EL  RL EL    +L+EAQRLEQR  +DLEM++  G C 
Sbjct: 243 PKSHFVTPREHLLRAMEAIRNELAERLAELHDNNKLVEAQRLEQRTVFDLEMIQEVGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+LTGR PGE PPTL +Y+P ++L+ +DESHVT+PQI GM++GD  RK TL ++
Sbjct: 303 GVENYSRHLTGRQPGEAPPTLLDYLPNNALVMLDESHVTVPQIGGMFKGDRSRKTTLVDF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  + P  I VSATPG +E+EQC G+IVEQ+IRPTGLVDP VE
Sbjct: 363 GFRLPSALDNRPLQFPEFEAIVPQAIYVSATPGPYEMEQCGGVIVEQVIRPTGLVDPEVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D         + G R+L T LTKRMAEDLTEYL    +RVRY+HS++ T+E
Sbjct: 423 VRPAGTQVDDFVSAATPVIETGFRVLATCLTKRMAEDLTEYLNNLGMRVRYLHSDIDTVE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLD+PE  LVAI DADKEGFLRS+ SL QTIGRAAR
Sbjct: 483 RMEILRDLRLGVFDVLVGINLLREGLDLPEVALVAIFDADKEGFLRSERSLTQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  +VILYAD IT S+Q A+DET RRR +QL +N +H I PQ+VK +I +++  +   D
Sbjct: 543 NIEGRVILYADKITNSMQRAMDETRRRRVRQLAYNAEHGITPQTVKSEIKDILGSVYEMD 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            A  +I   A+   ++  + +  +  L + M  AA +L FE+AAR RDE  +LK 
Sbjct: 603 YA--HIPEVAEPEPMTSAQKQQRMSELERLMAEAAADLRFEDAARYRDERIQLKE 655


>gi|149019230|ref|ZP_01834592.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP23-BS72]
 gi|147931100|gb|EDK82079.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP23-BS72]
          Length = 662

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDYMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+TI QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|322375330|ref|ZP_08049843.1| excinuclease ABC subunit B [Streptococcus sp. C300]
 gi|321279593|gb|EFX56633.1| excinuclease ABC subunit B [Streptococcus sp. C300]
          Length = 662

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A +     +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVSKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|229548705|ref|ZP_04437430.1| excinuclease ABC subunit B [Enterococcus faecalis ATCC 29200]
 gi|256957371|ref|ZP_05561542.1| excinuclease ABC [Enterococcus faecalis DS5]
 gi|257077633|ref|ZP_05571994.1| excinuclease ABC [Enterococcus faecalis JH1]
 gi|257421018|ref|ZP_05598008.1| excinuclease ABC subunit B [Enterococcus faecalis X98]
 gi|294781575|ref|ZP_06746912.1| excinuclease ABC, B subunit [Enterococcus faecalis PC1.1]
 gi|312951869|ref|ZP_07770758.1| excinuclease ABC subunit B [Enterococcus faecalis TX0102]
 gi|229306171|gb|EEN72167.1| excinuclease ABC subunit B [Enterococcus faecalis ATCC 29200]
 gi|256947867|gb|EEU64499.1| excinuclease ABC [Enterococcus faecalis DS5]
 gi|256985663|gb|EEU72965.1| excinuclease ABC [Enterococcus faecalis JH1]
 gi|257162842|gb|EEU92802.1| excinuclease ABC subunit B [Enterococcus faecalis X98]
 gi|294451353|gb|EFG19818.1| excinuclease ABC, B subunit [Enterococcus faecalis PC1.1]
 gi|310630167|gb|EFQ13450.1| excinuclease ABC subunit B [Enterococcus faecalis TX0102]
 gi|315036140|gb|EFT48072.1| excinuclease ABC subunit B [Enterococcus faecalis TX0027]
 gi|315148140|gb|EFT92156.1| excinuclease ABC subunit B [Enterococcus faecalis TX4244]
 gi|315153185|gb|EFT97201.1| excinuclease ABC subunit B [Enterococcus faecalis TX0031]
 gi|315154903|gb|EFT98919.1| excinuclease ABC subunit B [Enterococcus faecalis TX0043]
 gi|323479956|gb|ADX79395.1| excinuclease ABC, Beta subunit [Enterococcus faecalis 62]
          Length = 665

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/661 (54%), Positives = 475/661 (71%), Gaps = 1/661 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    F + + Y P+GDQPAAIA+L+ G+   EK Q+LLG TG+GKTFT++ VI+ + +P
Sbjct: 5   ETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCI+G+G    YSQ +V L++G  +++ ELL SLV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E   LTG+ +   E
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I+  +H+VT    +  A+  I+EEL+ RL  L  E +LLEAQRLEQR  YD+EM+  
Sbjct: 245 HVAIFPATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    IENYSR++ GR  GEPP TL ++ P+D LL +DESHVT+PQI GMY GD  RK 
Sbjct: 305 MGYTSGIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +V+QIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VEIR    Q++D+  EI+   ++  R+ +T LTK+MAEDLT+Y  E  ++V+Y+HS+
Sbjct: 424 DPEVEIRPIMGQIDDLVGEIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           VKTLER EIIRDLRLG+FD+L+GINLLREG+D+PE  L+AILDADKEGFLRS+ SL+QT+
Sbjct: 484 VKTLERTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTM 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN   KVI+YAD IT S+Q A+DET RRR  Q  +N++H I P+++ ++I ++I  
Sbjct: 544 GRAARNAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               D   T + +D     LS+++    L  L ++M  AA  L+FE AA +RD I  LK+
Sbjct: 604 SKTADKDETVVQLDKSYEDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKA 663

Query: 796 S 796
           +
Sbjct: 664 A 664


>gi|225860928|ref|YP_002742437.1| excinuclease ABC subunit B [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229892|ref|ZP_06963573.1| excinuclease ABC subunit B [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254352|ref|ZP_06977938.1| excinuclease ABC subunit B [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502764|ref|YP_003724704.1| excinuclease ABC subunit B [Streptococcus pneumoniae TCH8431/19A]
 gi|254764915|sp|C1CR65|UVRB_STRZT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|225726381|gb|ACO22232.1| excinuclease ABC, B subunit [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238359|gb|ADI69490.1| excinuclease ABC subunit B [Streptococcus pneumoniae TCH8431/19A]
 gi|327389474|gb|EGE87819.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA04375]
          Length = 662

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A +     +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVSKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|256959893|ref|ZP_05564064.1| excinuclease ABC [Enterococcus faecalis Merz96]
 gi|256964403|ref|ZP_05568574.1| excinuclease ABC [Enterococcus faecalis HIP11704]
 gi|293384724|ref|ZP_06630578.1| excinuclease ABC subunit B [Enterococcus faecalis R712]
 gi|293387464|ref|ZP_06632016.1| excinuclease ABC subunit B [Enterococcus faecalis S613]
 gi|307272574|ref|ZP_07553827.1| excinuclease ABC subunit B [Enterococcus faecalis TX0855]
 gi|312908577|ref|ZP_07767520.1| excinuclease ABC subunit B [Enterococcus faecalis DAPTO 512]
 gi|312910502|ref|ZP_07769347.1| excinuclease ABC subunit B [Enterococcus faecalis DAPTO 516]
 gi|256950389|gb|EEU67021.1| excinuclease ABC [Enterococcus faecalis Merz96]
 gi|256954899|gb|EEU71531.1| excinuclease ABC [Enterococcus faecalis HIP11704]
 gi|291077974|gb|EFE15338.1| excinuclease ABC subunit B [Enterococcus faecalis R712]
 gi|291083115|gb|EFE20078.1| excinuclease ABC subunit B [Enterococcus faecalis S613]
 gi|306510859|gb|EFM79876.1| excinuclease ABC subunit B [Enterococcus faecalis TX0855]
 gi|310625463|gb|EFQ08746.1| excinuclease ABC subunit B [Enterococcus faecalis DAPTO 512]
 gi|311289198|gb|EFQ67754.1| excinuclease ABC subunit B [Enterococcus faecalis DAPTO 516]
 gi|315170673|gb|EFU14690.1| excinuclease ABC subunit B [Enterococcus faecalis TX1342]
          Length = 665

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/661 (54%), Positives = 475/661 (71%), Gaps = 1/661 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    F + + Y P+GDQPAAIA+L+ G+   EK Q+LLG TG+GKTFT++ VI+ + +P
Sbjct: 5   ETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCI+G+G    YSQ +V L++G  +++ ELL SLV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E   LTG+ +   E
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I+  +H+VT    +  A+  I+EEL+ RL  L  E +LLEAQRLEQR  YD+EM+  
Sbjct: 245 HVAIFPATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    IENYSR++ GR  GEPP TL ++ P+D LL +DESHVT+PQI GMY GD  RK 
Sbjct: 305 MGYTSGIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +V+QIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VEIR    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+Y  E  ++V+Y+HS+
Sbjct: 424 DPEVEIRPIMGQIDDLVGEINERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG+FD+L+GINLLREG+D+PE  L+AILDADKEGFLRS+ SL+QT+
Sbjct: 484 IKTLERTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTM 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN   KVI+YAD IT S+Q A+DET RRR  Q  +N++H I P+++ ++I ++I  
Sbjct: 544 GRAARNAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               D   T + +D     LS+++    L  L ++M  AA  L+FE AA +RD I  LK+
Sbjct: 604 SKTADKDETVVQLDKSYEDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKA 663

Query: 796 S 796
           +
Sbjct: 664 A 664


>gi|262282394|ref|ZP_06060162.1| excinuclease ABC subunit B [Streptococcus sp. 2_1_36FAA]
 gi|262261685|gb|EEY80383.1| excinuclease ABC subunit B [Streptococcus sp. 2_1_36FAA]
          Length = 662

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELISKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|330959091|gb|EGH59351.1| excinuclease ABC subunit B [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 671

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/670 (55%), Positives = 486/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +
Sbjct: 1   MSEFQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+I+P+  +  A R+ +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLVEAMENIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G IVEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR A TQV+D+  EI+  A    R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ 
Sbjct: 420 QIEIRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S++ AI ET RRREKQ+  N +H I P+ V + + ++++   
Sbjct: 540 AARNLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGAT 599

Query: 738 LEDAATTNISIDAQQLS---------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  + +      A+             S  +    ++ L ++M+  A +L FE AA++RD
Sbjct: 600 VPGSRSKKRKGMAKAAEENARYENELRSPSEINKRIRQLEEKMYQLARDLEFEAAAQMRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EIGKLRERLL 669


>gi|146283328|ref|YP_001173481.1| excinuclease ABC subunit B [Pseudomonas stutzeri A1501]
 gi|145571533|gb|ABP80639.1| excinuclease ABC, B subunit [Pseudomonas stutzeri A1501]
          Length = 671

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/667 (55%), Positives = 487/667 (73%), Gaps = 10/667 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ T + P+GDQP AI Q+++GI +    Q LLGVTGSGKTF++A VI  +QRP +
Sbjct: 1   MSKFELVTRFKPAGDQPEAIRQMIEGIEAGLSHQTLLGVTGSGKTFSIANVIAHVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+G  +SY +M++ +  GD ++Q+ELL  L   QY
Sbjct: 121 MRLSATKALLERPDAIIVTTVSCIYGLGDPQSYLKMVLHVDRGDRLDQRELLRRLTGLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+IFP+  +  A R+ +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIFPAESDLEAVRIELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A++ IK+EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLLDAIEKIKDELRERLDYLRSQNKLVEAQRLEQRTRFDLEMIMELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR+ GEPPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRDAGEPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG +E E   G +VEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEAICPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R A TQV+D+  EI     +  R+L T LTKRM+EDLT+YL + +++VRY+HS++ 
Sbjct: 420 QIEVRPALTQVDDLLSEIRKCVAKEERVLATTLTKRMSEDLTDYLGDHDVKVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S+Q AIDET RRR KQ+  N+ H I P+ VK+ + ++++   
Sbjct: 540 AARNLNGRAILYADNITGSMQRAIDETERRRAKQIAFNEAHGIVPKGVKKDVQDILEGAT 599

Query: 738 L---------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +          +A     S   +    S  +    ++ L ++M L A +L FE AA  RD
Sbjct: 600 VPGSRSKKRRGEAKAAEESARYESELRSPSEITKRIRQLEEKMLLLARDLEFEAAAEARD 659

Query: 789 EIKRLKS 795
           EI +L+ 
Sbjct: 660 EIHKLRE 666


>gi|170733570|ref|YP_001765517.1| excinuclease ABC subunit B [Burkholderia cenocepacia MC0-3]
 gi|169816812|gb|ACA91395.1| excinuclease ABC, B subunit [Burkholderia cenocepacia MC0-3]
          Length = 696

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/671 (54%), Positives = 484/671 (72%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 21  EGSPFQLYQPYPPAGDQPTAIDTLVEGVGDGLAFQTLLGVTGSGKTFTMANTIARLGRPA 80

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 81  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 140

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 141 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRAGDKLGQRDVIARLIAMQ 200

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 201 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKIPR 260

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +DLEML+  
Sbjct: 261 FTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRFDLEMLQEL 320

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PG+PPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 321 GFCKGIENYSRHFSGAAPGDPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 380

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ++RPTGLVD
Sbjct: 381 LVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A +QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 440 PEIEVRPASSQVDDVLTEINARVKAGERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYAD +T+S++ AI ET RRR KQ+ +N+K  I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGKAILYADNMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA  RD++  L
Sbjct: 620 YNADDARAELKEAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAAATRDQLAVL 679

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 680 RERVFGANVGD 690


>gi|116492251|ref|YP_803986.1| excinuclease ABC subunit B [Pediococcus pentosaceus ATCC 25745]
 gi|116102401|gb|ABJ67544.1| Excinuclease ABC subunit B [Pediococcus pentosaceus ATCC 25745]
          Length = 667

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/665 (52%), Positives = 464/665 (69%), Gaps = 2/665 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             ++   F++ + Y P+GDQP AI +L+ GI S EK Q+LLG TG+GKTFT++ VI+ + 
Sbjct: 3   KRENDREFELVSKYQPTGDQPTAINELVDGIKSGEKEQILLGATGTGKTFTISNVIQKVN 62

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P ++++ NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+
Sbjct: 63  KPTLILSHNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSIND 122

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +ID +RHSAT SLLERND IVV+SVS I+G+G    Y    + L++G  +++ +LL  LV
Sbjct: 123 EIDELRHSATSSLLERNDVIVVASVSSIFGLGDPREYQDQALTLRVGQEIDRNKLLRELV 182

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R DI   RG FRV GD +EIFP+  +  + RV  FG++I+ + E   LTG+ I +
Sbjct: 183 DIQYDRNDIDFQRGRFRVHGDVVEIFPAANDAHSIRVEFFGDEIDRMREMDALTGEIIGD 242

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            + I I+  +H++T    +  A+K I+ ELK RL EL+ EG+LLEAQRL QR TYD+EML
Sbjct: 243 RDHITIFPATHFMTNEDRMEHAIKNIEAELKDRLEELDGEGKLLEAQRLRQRTTYDIEML 302

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           +  G    IENYSR++ GR PGE P TL ++ P+D LL VDESHVT+PQ+ GMY GD  R
Sbjct: 303 KEMGYTNGIENYSRHMDGRKPGEAPYTLLDFFPDDFLLVVDESHVTMPQVRGMYNGDRAR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K  L +YGFRLPS +DNRPL+ EE+       + +SATPG +E E+    +V+QIIRPTG
Sbjct: 363 KQQLVDYGFRLPSALDNRPLKLEEFEKHINQVVYMSATPGDYENERTNN-VVQQIIRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP +E+R    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+YL +  I+V Y+H
Sbjct: 422 LLDPIIEVRPIMGQMDDLLGEINQRIEKDERVFVTTLTKKMAEDLTDYLKDMGIKVAYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++KTLER  IIRDLR+GK+DVLVGINLLREG+D+PE  LVAILDADKEGFLR+  S+IQ
Sbjct: 482 SDIKTLERTRIIRDLRVGKYDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNTRSMIQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
             GRAARN N  VI+YAD +TKS+Q  IDET RRR  Q  +N++H I P ++K+ I  +I
Sbjct: 542 VAGRAARNENGHVIMYADHMTKSMQETIDETARRRTIQEAYNREHGITPHTIKKDIRSLI 601

Query: 734 DPIL-LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                 ED    +  +D     +  K  K  + +L  QM  AA  L+FE+AA +RD +  
Sbjct: 602 SSTSDTEDKGKKDDFLDVDFADMDSKDQKEMIANLEDQMRAAAKKLDFEKAANLRDTVLE 661

Query: 793 LKSSP 797
           LK+  
Sbjct: 662 LKAQI 666


>gi|290580728|ref|YP_003485120.1| excinuclease ABC subunit B [Streptococcus mutans NN2025]
 gi|254997627|dbj|BAH88228.1| excinuclease ABC subunit B [Streptococcus mutans NN2025]
          Length = 663

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/660 (53%), Positives = 477/660 (72%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           KD   F + + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI+ + +P
Sbjct: 5   KDNNQFHLVSKYEPSGDQPEAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+    + + +LL+ LV  
Sbjct: 125 DKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPSQEISRDQLLNDLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGRVLGEVD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I+  +H++T    +  A+  I++E++ ++   E EG+L+EAQR+ QR  YD+EML  
Sbjct: 245 HLAIFPATHFMTNDEHMEVAIAKIQKEMEEQVRLFEAEGKLIEAQRIRQRTEYDVEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTSGVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKE 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L  YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ    ++EQIIRPTGL+
Sbjct: 365 MLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQT-DTVIEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R    Q++D+  EIN  A +G RI +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPTMGQMDDLLGEINSRADKGERIFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN    VI+YADT+T+S++ AIDET RRR+ Q+ +N++H I PQ++K+ I ++I  
Sbjct: 544 GRAARNSQGHVIMYADTVTQSMRRAIDETHRRRQIQMAYNEEHGIIPQTIKKDIRDLIAI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               D+     ++D    +++K + +  +K L+KQM  AA+ L+FE AA+IRD +  LK+
Sbjct: 604 TKANDSEVAEEAVD--YNAMTKSERQEAIKKLQKQMQEAAELLDFELAAQIRDMVLELKA 661


>gi|295091037|emb|CBK77144.1| excinuclease ABC, B subunit [Clostridium cf. saccharolyticum K10]
          Length = 663

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/658 (53%), Positives = 481/658 (73%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AIAQL+KG     + + LLGVTGSGKTFTMA VI+A+ +P +
Sbjct: 1   MDHFELVSEYAPTGDQPQAIAQLVKGFQEGNQFETLLGVTGSGKTFTMANVIQALNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID+
Sbjct: 61  IIAHNKTLAAQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER+D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E++  L+  QY
Sbjct: 121 LRHSATAALSERSDVIIVASVSCIYGLGSPIDYKEMVISLRPGMIKDRDEVIHKLIDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RG+FRV GD +EI+P++    A+R+  FG++++ I+E   LTG+    +  +
Sbjct: 181 TRNDMDFKRGSFRVRGDVLEIYPAYSGGDAYRIEFFGDEVDRITEIDTLTGEIKAQLGHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV P+  +  A K I EELK ++   + E +LLEAQR+ +R  +D+EM+  TG
Sbjct: 241 AIFPASHYVIPKEKMELAAKNILEELKEQVAWFKSEDKLLEAQRILERTNFDVEMMRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTG  PGEPP TL +Y PED L+ +DESH+T+PQI GMY GD  RK TL
Sbjct: 301 FCSGIENYSRHLTGSAPGEPPCTLIDYFPEDFLIIIDESHITLPQIRGMYAGDRSRKKTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL FEE+       + VSATP  +E E  + +  EQIIRPTGL+DP
Sbjct: 361 VEYGFRLPSALDNRPLNFEEFESKIDQMLFVSATPSDYE-EAHEMLRAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+++R    Q++D+  E+N   ++  ++L+T LTKRMAEDLT+Y+ +  IRV+Y+HS++ 
Sbjct: 420 PIDVRPVEGQIDDLVSEVNREIEKKGKVLITTLTKRMAEDLTDYMRDAGIRVKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQT+GR
Sbjct: 480 TLERAEIIRDMRLDVFDVLVGINLLREGLDIPEISLVAILDADKEGFLRSETSLIQTVGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YADTIT S+++AI+ET RRR+ Q  +N++H+I P ++K+ + ++I    
Sbjct: 540 AARNSEGHVIMYADTITDSMRVAIEETKRRRQIQQAYNEEHHITPTTIKKAVRDLISISQ 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             +  T  ++ D +  S+ +K+ K  +K L K+MH AA  LNFEEAA +RD +  +K 
Sbjct: 600 AAEGVTNEVTKDPE--SMDEKELKKLVKELTKKMHQAAAELNFEEAAILRDRMVEIKK 655


>gi|157693900|ref|YP_001488362.1| excinuclease ABC subunit B [Bacillus pumilus SAFR-032]
 gi|157682658|gb|ABV63802.1| excision endonuclease subunit B [Bacillus pumilus SAFR-032]
          Length = 661

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/657 (53%), Positives = 477/657 (72%), Gaps = 2/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI +L++GIH  ++ Q LLG TG+GKTFT++ +I+ + +P +V+A
Sbjct: 5   FELVSNYQPQGDQPKAIEKLVEGIHQGKQHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y ++++ L+    +E+ +LL  LV  QY R 
Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYRELVLSLRTEMEIERNQLLRKLVDIQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ + + E + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I++EL+ +L +L   G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMEKAIVNIEQELEEQLEKLRDNGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PG  P TL +Y P+D ++ VDESHVT+PQI  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTVPQIRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       + VSATPG +ELE+    +VEQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLTFDEFEKHINHIVHVSATPGPYELEKTPE-VVEQIIRPTGLLDPIIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+   ++  R+L+T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIHARIEKNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-E 739
           N   +VI+YAD +TKS+ +AI ET RRRE+Q  +N+K+ I PQ++ +KI + I    + E
Sbjct: 544 NSEGRVIMYADKMTKSMDIAIQETKRRREQQEAYNEKYGITPQTIHKKIRDAIKATKIHE 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           ++     +   +   +SKK+ +  ++ +  +M  AA  L+FE+AA +RD +  LK+ 
Sbjct: 604 ESEEYETNAAPKLSKMSKKEREKVIEKVELEMKDAAKALDFEKAAELRDLLLELKAE 660


>gi|300862294|ref|ZP_07108374.1| excinuclease ABC, B subunit [Enterococcus faecalis TUSoD Ef11]
 gi|300848819|gb|EFK76576.1| excinuclease ABC, B subunit [Enterococcus faecalis TUSoD Ef11]
 gi|315145264|gb|EFT89280.1| excinuclease ABC subunit B [Enterococcus faecalis TX2141]
 gi|315161962|gb|EFU05979.1| excinuclease ABC subunit B [Enterococcus faecalis TX0645]
          Length = 665

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/661 (54%), Positives = 475/661 (71%), Gaps = 1/661 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    F + + Y P+GDQPAAIA+L+ G+   EK Q+LLG TG+GKTFT++ VI+ + +P
Sbjct: 5   ETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCI+G+G    YSQ +V L++G  +++ ELL SLV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E   LTG+ +   E
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I+  +H+VT    +  A+  I+EEL+ RL  L  E +LLEAQRLEQR  YD+EM+  
Sbjct: 245 HVAIFPATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    IENYSR++ GR  GEPP TL ++ P+D LL +DESHVT+PQI GMY GD  RK 
Sbjct: 305 MGYTSGIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +V+QIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VEIR    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+Y  E  ++V+Y+HS+
Sbjct: 424 DPEVEIRPIMGQIDDLVGEINERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG+FD+L+GINLLREG+D+PE  L+AILDADKEGFLRS+ SL+QT+
Sbjct: 484 IKTLERTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTM 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN   KVI+YAD IT S+Q A+DET RRR  Q  +N++H I P+++ ++I ++I  
Sbjct: 544 GRAARNAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               D   T + +D     LS+++    L  L ++M  AA  L+FE AA +RD I  LK+
Sbjct: 604 SKTADKDETVVQLDKSYEDLSRQEKADLLLKLEREMKDAAKALDFETAATLRDTILELKA 663

Query: 796 S 796
           +
Sbjct: 664 A 664


>gi|167838882|ref|ZP_02465659.1| excinuclease ABC subunit B [Burkholderia thailandensis MSMB43]
          Length = 696

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/671 (54%), Positives = 482/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D + FQ+   Y PSGDQP AIA L++G+      Q LLGVTGSGKT+TMA  I  + RPA
Sbjct: 21  DGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANTIARLGRPA 80

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 81  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 140

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+++ L+  Q
Sbjct: 141 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDRIGQREVIARLIAMQ 200

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG+  + +  
Sbjct: 201 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDSLHLFDPLTGRVRQKIPR 260

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +DLEML+  
Sbjct: 261 FTVYPSSHYVTPRETVMRAVETIKDELRDRLEFFHRDGKLVEAQRLEQRTRFDLEMLQEL 320

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 321 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYNGDRARKEN 380

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL+F E+       + VSATP  +E     G   EQ++RPTGLVD
Sbjct: 381 LVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYERRVS-GQTAEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 440 PEIEVRPASTQVDDVLSEITERVKADERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N++  I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEEMGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA+ RD++  L
Sbjct: 620 YNADEARAELKEAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAQTRDQLALL 679

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 680 RERVFGANVGD 690


>gi|225856905|ref|YP_002738416.1| excinuclease ABC subunit B [Streptococcus pneumoniae P1031]
 gi|254764914|sp|C1CKX8|UVRB_STRZP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|225726094|gb|ACO21946.1| excinuclease ABC, B subunit [Streptococcus pneumoniae P1031]
          Length = 662

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAVAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+TI QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|320156870|ref|YP_004189249.1| excinuclease ABC subunit B [Vibrio vulnificus MO6-24/O]
 gi|319932182|gb|ADV87046.1| excinuclease ABC subunit B [Vibrio vulnificus MO6-24/O]
          Length = 676

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/671 (55%), Positives = 487/671 (72%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             + + +DY PSGDQP AI QL +G+ +    Q LLGVTGSGKTFT+A VI   QRPAI+
Sbjct: 3   KLYDLVSDYAPSGDQPTAIKQLTEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  E+Y QM++ ++ GD ++Q+++L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPEAYLQMMLHIRRGDVMDQRDILRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R DI   RG FRV G+ I++FP+  +  A R+ MF ++I+ IS F PLTG    R++   
Sbjct: 183 RNDIAFERGQFRVRGEVIDVFPAESDQDAVRIEMFDDEIDCISVFDPLTGVVKQRDLPRF 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK+EL+ R   L    +LLE QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPRERILQAIENIKQELRERQTYLRDNNKLLEEQRISQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G I +Q++RPTGL+DP
Sbjct: 363 VEYGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ 
Sbjct: 423 VLEVRPVATQVDDLLSEIRIRAVKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN++ K ILYAD+ITKS++ A+DET RRREKQ  +N+K  I PQ++K  I ++++   
Sbjct: 543 AARNLHGKAILYADSITKSMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDIMELGD 602

Query: 738 LEDAATTNISIDAQQLS----------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           +  +    +S                 L+ ++ +  +  L  QM+  A NL FE AA+ R
Sbjct: 603 ITKSRKQKVSKTVPLSKVAEPSLSYNVLTPQQLEKEITKLEAQMYKHAQNLEFELAAQKR 662

Query: 788 DEIKRLKSSPY 798
           DEI++L+    
Sbjct: 663 DEIEKLRQQFI 673


>gi|254185290|ref|ZP_04891878.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1655]
 gi|184209525|gb|EDU06568.1| excinuclease ABC, B subunit [Burkholderia pseudomallei 1655]
          Length = 696

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/671 (54%), Positives = 481/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y PSGDQP AIA L++G+      Q LLGVTGSGKT+TMA  I  + RPA
Sbjct: 21  EGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANTIARLGRPA 80

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 81  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 140

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+++ L+  Q
Sbjct: 141 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREVIARLIAMQ 200

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG+  + +  
Sbjct: 201 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTGRVRQKIPR 260

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+ +EAQRLEQR  +DLEML+  
Sbjct: 261 FTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKFVEAQRLEQRTRFDLEMLQEL 320

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 321 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 380

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL+F E+       + VSATP  +E     G   EQ++RPTGLVD
Sbjct: 381 LVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYEQRVS-GQTAEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 440 PQIEVRPASTQVDDVLSEITERVKANERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N+K  I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA+ RD++  L
Sbjct: 620 YNADEARAELKEAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAQTRDQLALL 679

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 680 RERVFGANVGD 690


>gi|302188913|ref|ZP_07265586.1| excinuclease ABC subunit B [Pseudomonas syringae pv. syringae 642]
          Length = 671

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/670 (55%), Positives = 486/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +
Sbjct: 1   MSEFQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+I+P+  +  A RV +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLVEAMEGIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G IVEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR A TQV+D+  EI+  A    R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ 
Sbjct: 420 QIEIRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S++ AI ET RRREKQL  N +H I P+ V + + ++++   
Sbjct: 540 AARNLNGRAILYADRITGSMERAIGETERRREKQLAFNLEHGITPKGVFKDVADIMEGAT 599

Query: 738 LEDAATTNISIDAQQLS---------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  + +      A+             S  +    ++ L ++M+  A +L FE AA++RD
Sbjct: 600 VPGSRSKKRKGMAKAAEENARYENELRSPSEINKRIRQLEEKMYQLARDLEFEAAAQMRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EIGKLRERLL 669


>gi|323489396|ref|ZP_08094625.1| excinuclease ABC subunit B [Planococcus donghaensis MPA1U2]
 gi|323396890|gb|EGA89707.1| excinuclease ABC subunit B [Planococcus donghaensis MPA1U2]
          Length = 660

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/656 (55%), Positives = 471/656 (71%), Gaps = 1/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q  Y P+GDQP AIA+L +GI   ++ Q LLG TG+GKT+TM+ VI+ +++P +VMA
Sbjct: 5   FNLQAPYEPAGDQPQAIAELTQGIIDGKRCQTLLGATGTGKTYTMSNVIQQVKKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP++DT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVPQSDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER+D IV++SVSCIYG+GS + Y +++V L+ G  +E+ +LL  LV  QY+R 
Sbjct: 125 SATSSLFERDDVIVIASVSCIYGLGSPKEYRELVVSLRKGMEIERNQLLRKLVDVQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  IRGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ I   + + I+
Sbjct: 185 DINFIRGTFRVRGDVVEIFPASRDERCLRVEFFGDEIDRIREVDALTGEIIGERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I+ EL+ RL E+  E +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREDKMVKAIENIEVELEERLKEMRAEDKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED LL VDESHVT+PQ+ GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGAQPYTLIDYFPEDFLLVVDESHVTLPQVRGMFNGDQARKKVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL F E+       + VSATPG +ELE     +VEQIIRPTGL+DP +E
Sbjct: 365 GFRLPSAMDNRPLTFTEFEEHISQAVFVSATPGPYELEHTPE-MVEQIIRPTGLLDPTIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+ DEI   +++  R+L+T LTK+M+EDLT YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLMDEIRQRSEKNERVLVTTLTKKMSEDLTAYLKDAGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIR+LR+G +DVLVGINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RIEIIRELRMGVYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT S+Q A+DETTRRR  Q E+N+KH + P ++++KI +VI      +
Sbjct: 544 NANGRVIMYADRITDSMQKAMDETTRRRTIQAEYNEKHGVTPITIQKKIRDVIRATNAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +   IS       L K++    +  L  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ESEEYISKAVTGKKLKKEERVKLISLLETEMKEAAKALDFERAAELRDTVLELKAE 659


>gi|221135472|ref|ZP_03561775.1| excinuclease ABC subunit B [Glaciecola sp. HTCC2999]
          Length = 672

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/667 (55%), Positives = 483/667 (72%), Gaps = 7/667 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++Q+ Y P+GDQP AIA L++GI      Q LLGVTGSGKTFTMA VIE++QRP ++
Sbjct: 3   KVFELQSKYSPAGDQPTAIASLVEGIEDGLACQTLLGVTGSGKTFTMANVIESVQRPTLI 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SSIN+ I++M
Sbjct: 63  LAHNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSINDHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ER D ++++SVS IYG+G  +SY +M++ L+ GD+++Q+++L  L + QYK
Sbjct: 123 RLSATKALMERRDVVIIASVSAIYGLGDPKSYMKMLLHLRQGDTMDQRDILRRLAELQYK 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG FRV GD I+IFP+  E  A RV +F  +IE+IS F PLTG   + V    
Sbjct: 183 RNDVAFERGNFRVRGDVIDIFPADSEKQAVRVELFDEEIEQISLFDPLTGAVDKKVTRAT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++  +HYVTPR  +  A++ IK EL  R  +L++  +L+E QR+ QR  +D+EM+   G 
Sbjct: 243 VFPKTHYVTPREKILDAIERIKTELVSRKDQLKESNKLIEEQRISQRTQFDIEMMLELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGEPPPTL +Y P+D LL +DESHVT+ QI  MY+GD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRAPGEPPPTLIDYFPKDGLLMIDESHVTVSQIGAMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  + P TI VSATPG  ELE+C G +VEQ++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEHIAPQTIYVSATPGKHELERCAGDVVEQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR   TQV+DV  EI+       R+L+T LTKRMAEDL+EYL E  ++VRY+HS++ T
Sbjct: 423 IEIRPVATQVDDVLSEIHKRVAVNERVLITTLTKRMAEDLSEYLNENGVKVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ERIEIIRDLR+GKFDV+VGINLLREGLD+PE  LVAILDADKEGFLR+  SLIQTIGRA
Sbjct: 483 VERIEIIRDLRIGKFDVIVGINLLREGLDMPEVSLVAILDADKEGFLRADKSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           AR++N + ILY D IT S+Q AIDET RRR+KQ+EHN+ H I PQ++ + I +++D    
Sbjct: 543 ARHLNGRAILYGDKITGSMQRAIDETDRRRKKQIEHNELHGIVPQALNKPITDIMDVGDD 602

Query: 735 ---PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
              P   +         +     ++  +    +  L K M  AA  L FE+AA +RD+I+
Sbjct: 603 SAHPASGKVKLRKIAEKEKTYQKMTATQMMDKVAELEKTMFEAARELEFEKAASLRDDIE 662

Query: 792 RLKSSPY 798
           +L+S   
Sbjct: 663 KLRSEIV 669


>gi|221198516|ref|ZP_03571562.1| excinuclease ABC, B subunit [Burkholderia multivorans CGD2M]
 gi|221208534|ref|ZP_03581535.1| excinuclease ABC, B subunit [Burkholderia multivorans CGD2]
 gi|221171525|gb|EEE03971.1| excinuclease ABC, B subunit [Burkholderia multivorans CGD2]
 gi|221182448|gb|EEE14849.1| excinuclease ABC, B subunit [Burkholderia multivorans CGD2M]
          Length = 732

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/671 (54%), Positives = 485/671 (72%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 57  EGSPFQLYQPYPPAGDQPTAIDTLVEGVQDGLAFQTLLGVTGSGKTFTMANTIARLGRPA 116

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 117 IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 176

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 177 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQRDVIARLIAMQ 236

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 237 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKIPR 296

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IKEEL+ RL    +EG+L+EAQRLEQR  +DLEML+  
Sbjct: 297 FTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHREGKLVEAQRLEQRTRFDLEMLQEL 356

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 357 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 416

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ++RPTGLVD
Sbjct: 417 LVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSATPADYE-QRVTGQIAEQVVRPTGLVD 475

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A +QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  I+VRY+HS++
Sbjct: 476 PEIEVRPASSQVDDVLTEINARVKAGERVLITVLTKRMAEQLTEFLADHGIKVRYLHSDI 535

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 536 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 595

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYADT+T+S++ AI ET RRR KQ+ +N+K  I P+ V ++I ++ID +
Sbjct: 596 RAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGV 655

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA  RD++  L
Sbjct: 656 YNADDARAELKEAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAAATRDQLALL 715

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 716 RERVFGANVRD 726


>gi|28869367|ref|NP_791986.1| excinuclease ABC subunit B [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|81840219|sp|Q884C9|UVRB_PSESM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|28852608|gb|AAO55681.1| excinuclease ABC, B subunit [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331018632|gb|EGH98688.1| excinuclease ABC subunit B [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 671

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/670 (55%), Positives = 485/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +
Sbjct: 1   MSEFQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLRMVLHVDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+I+P+  +  A R+ +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLVEAMEGIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G IVEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR A TQV+D+  EI+  A    R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ 
Sbjct: 420 QIEIRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S++ AI ET RRREKQ+  N +H I P+ V + + ++++   
Sbjct: 540 AARNLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGAT 599

Query: 738 LED---------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +           A     S   +    S  +    ++ L ++M+  A +L FE AA++RD
Sbjct: 600 VPGSRSKKRKGMAKAAEESARYENELRSPSEINKRIRQLEEKMYQLARDLEFEAAAQMRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EIGKLRERLL 669


>gi|330502895|ref|YP_004379764.1| excinuclease ABC subunit B [Pseudomonas mendocina NK-01]
 gi|328917181|gb|AEB58012.1| excinuclease ABC subunit B [Pseudomonas mendocina NK-01]
          Length = 671

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/670 (55%), Positives = 489/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +
Sbjct: 1   MSEFQLVTRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++L+ER D IVV +VS IYG+GS E Y +M++ L  GD ++Q+ LL  L + QY
Sbjct: 121 MRLSATKALIERKDVIVVCTVSSIYGLGSPEEYLKMVLHLDRGDKMDQRALLRRLAELQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+IFP+  +  A RV +F +++E IS F PLTG+ I+ +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESISAFDPLTGEVIQKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A+++IK EL+ RL  L    +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLLEAVEHIKVELQQRLEYLRGANKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTL++Y+P+++LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPAGAPPPTLYDYLPDEALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RFEEW    P TI VSATPG +E E   G ++EQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFEEWEAASPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R ARTQV+D+  EI L    G R+L+T LTKRMAEDLT+YL + +++VRY+HS++ 
Sbjct: 420 EVEVRPARTQVDDLLSEIRLRVAAGDRVLVTTLTKRMAEDLTDYLGDHDVKVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N K ILYAD +T S+Q AI ET RRREKQ+  N+ + I P+ V++ + ++++  +
Sbjct: 540 AARNLNGKAILYADNMTGSMQRAIGETERRREKQIAFNEANGIVPKGVQKDVKDILEGAV 599

Query: 738 LED---------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +           A     S   +    S  +    ++ L ++M+  A +L FE AA++RD
Sbjct: 600 VPGARSNKRKGMAKAAEESARYENELRSPSEITKRIRQLEEKMYALARDLEFEAAAQLRD 659

Query: 789 EIKRLKSSPY 798
           EI++L+    
Sbjct: 660 EIQKLRDRLL 669


>gi|271501009|ref|YP_003334034.1| excinuclease ABC subunit B [Dickeya dadantii Ech586]
 gi|270344564|gb|ACZ77329.1| excinuclease ABC, B subunit [Dickeya dadantii Ech586]
          Length = 670

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/663 (56%), Positives = 474/663 (71%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHSAFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTG  ++ V    IY
Sbjct: 185 DQAFSRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHIVQTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR T+DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRLAQRTTFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVTIPQ+ GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+  G I++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEIIDQVVRPTGLLDPVLE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVTTQVDDLLSEIRKRAVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD IT S++ AI+ET RRREKQ  +N++H I PQ + +KI +++      +
Sbjct: 545 NLNGKAILYADRITPSMERAINETQRRREKQQAYNEQHGIVPQGLNKKIGDILQIGQSVN 604

Query: 741 -----AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                         A+   LS K     ++ L  QM   A NL FEEAAR+RDEI  L+ 
Sbjct: 605 GKGKGRGKKAAEPAARYQQLSPKALDQKIRELESQMLTHAQNLEFEEAARLRDEIHALRE 664

Query: 796 SPY 798
              
Sbjct: 665 QFI 667


>gi|115352299|ref|YP_774138.1| excinuclease ABC subunit B [Burkholderia ambifaria AMMD]
 gi|115282287|gb|ABI87804.1| Excinuclease ABC subunit B [Burkholderia ambifaria AMMD]
          Length = 696

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/671 (54%), Positives = 484/671 (72%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 21  EGSPFQLYQPYPPAGDQPTAIETLVEGVGDGLAFQTLLGVTGSGKTFTMANTIARLGRPA 80

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 81  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 140

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y +MI+ L+ GD + Q+++++ L+  Q
Sbjct: 141 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHKMILTLRAGDKLGQRDVIARLIAMQ 200

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 201 YSRNDQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKIPR 260

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IKEEL+ RL    ++G+L+EAQRLEQR  +DLEML+  
Sbjct: 261 FTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHRDGKLVEAQRLEQRTRFDLEMLQEL 320

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 321 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 380

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ++RPTGLVD
Sbjct: 381 LVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A +QV+DV  EIN     G R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 440 PEIEVRPASSQVDDVLTEINARVNAGERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYADT+T+S++ AI ET RRR KQ+ HN+K  I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAHNEKMGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA  RD++  L
Sbjct: 620 YNADDARAELKEAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAATRDQLALL 679

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 680 RERVFGANVGD 690


>gi|157962172|ref|YP_001502206.1| excinuclease ABC subunit B [Shewanella pealeana ATCC 700345]
 gi|157847172|gb|ABV87671.1| excinuclease ABC, B subunit [Shewanella pealeana ATCC 700345]
          Length = 667

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/662 (53%), Positives = 475/662 (71%), Gaps = 2/662 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ Y P+GDQP AI +L++G+ S    Q LLGVTGSGKTFT+A VI  M RP I+
Sbjct: 4   SVFQLESMYKPAGDQPTAINKLVEGLESGVACQTLLGVTGSGKTFTVANVIAKMSRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP T T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTGTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  ++Y +M++ L+ G ++EQ+++L  L + QY 
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPKAYMKMLLHLREGGNMEQRDILKRLSELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGT+RV G+ I+IFP+  +  A R+ +F ++IE +S F PLTG  ++ +  I 
Sbjct: 184 RNDIELQRGTYRVRGEVIDIFPADSDKNAIRIELFDDEIERLSLFDPLTGHVVKRIARIT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYVTPR ++  A + IK+EL+ R  +L +  +L+E QR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKSHYVTPRESILAATEDIKQELRDRKKQLLELNKLIEEQRITERVQYDVEMMTELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PG+ PPTL +Y+P+D LL +DESHVT+PQI  MY+GD  RK  L 
Sbjct: 304 CSGIENYSRYLSGRAPGDGPPTLLDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKMNLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P +I VSATP  +E+++  G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEALMPQSIFVSATPSDYEIDKSDGEIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    QV+D+  EI        R+L+T LTKRM+EDL+EYL E  ++VRY+HS++ T
Sbjct: 424 IEVRPVGIQVDDLLSEIGKRVAVNERVLVTTLTKRMSEDLSEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVL+GINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGVFDVLIGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PI 736
           ARN+N KVILY D ITKS+  AI ET RRREKQ ++N  + I P+ V ++I +V+D    
Sbjct: 544 ARNINGKVILYGDRITKSMDKAITETNRRREKQHQYNLDNGITPKGVVKRITDVMDVGDH 603

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              D+       +              +  L KQMH  A NL FEEAA +RD++ RL+  
Sbjct: 604 QYVDSERGVAEKEGGYHVAKPADISHDIDRLEKQMHEHAKNLEFEEAAAVRDQVSRLREQ 663

Query: 797 PY 798
             
Sbjct: 664 FI 665


>gi|328946381|gb|EGG40522.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK1087]
          Length = 662

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI +L+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEKLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADTIT+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTITQSMQRAIDETARRRAIQMTYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|291616772|ref|YP_003519514.1| UvrB [Pantoea ananatis LMG 20103]
 gi|291151802|gb|ADD76386.1| UvrB [Pantoea ananatis LMG 20103]
 gi|327393198|dbj|BAK10620.1| UvrABC system protein B UvrB [Pantoea ananatis AJ13355]
          Length = 673

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/663 (55%), Positives = 472/663 (71%), Gaps = 8/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L  G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEAGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVE+FVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEFFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDMALRVELFDEEVERLSLFDPLTGQVESVVPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L +  +LLE QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEDIKVELADRRKTLLENNKLLEEQRITQRTQFDLEMMGELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG +ELE+    +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGKYELEKSGDEVIDQVVRPTGLLDPILE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI        R+L+TVLTKRMAEDLTEYL E   +VRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRVTINERVLVTVLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           N+N K ILY D IT S+  AI+ET RRREKQ  HN+++ I PQ + +KI ++++      
Sbjct: 545 NINGKAILYGDKITPSMARAIEETERRREKQQRHNEENGIVPQGLNKKITDILELGNNVV 604

Query: 735 --PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                 + A       DA  L+LS +  +  +  L  QM   A NL FE+AA +RD+++ 
Sbjct: 605 KTRGKAKPAKRNAAEADADYLALSPQALQKKIHELEGQMQQHAQNLEFEQAAGLRDQLQE 664

Query: 793 LKS 795
           L++
Sbjct: 665 LRT 667


>gi|222150759|ref|YP_002559912.1| excinuclease ABC subunit B [Macrococcus caseolyticus JCSC5402]
 gi|222119881|dbj|BAH17216.1| excinuclease ABC subunit B [Macrococcus caseolyticus JCSC5402]
          Length = 657

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/656 (53%), Positives = 472/656 (71%), Gaps = 5/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI ++++GI   ++ Q LLG TG+GKTFTM+ VIE + +P ++MA
Sbjct: 6   FKIHSDYQPAGDQPDAIEKIVQGIKEGKRYQTLLGATGTGKTFTMSNVIERVGKPTLIMA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 66  HNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I++SSVSCIYG+G+ E Y  ++V +++G  +E+ +LL  LV  QY R 
Sbjct: 126 SATSALFERDDVIIISSVSCIYGLGNPEEYRDLVVSVRVGMEMERNQLLRKLVDVQYTRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   R+  FG++IE I E   LTG+ ++  E   I+
Sbjct: 186 DIDFRRGTFRVRGDVVEIFPASRDEQCIRIEFFGDEIERIREINYLTGEVLKEREHFAIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ +L +   EG+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 246 PASHFVTREEKMKLAIERIEKELEEQLKKFRDEGKLLEAQRLEQRTNYDLEMMREMGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L ++
Sbjct: 306 GIENYSLHLTLRPRGSTPYTLLDYFGDDWLIMMDESHVTVPQVRGMYNGDQARKNVLVDH 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLKFEEFEQKGHQFLYVSATPGPYEIEHTDE-MVEQIIRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R ++ Q++D+ +EI +  ++  R+L+T LTK+M+EDLT YL E  I+V Y+HSE+KTLE
Sbjct: 425 VRPSQHQIDDLIEEIRVRIEKNERVLITTLTKKMSEDLTIYLKEAGIKVNYLHSEIKTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RIEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSQRSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD IT+S+Q AIDET+RRR  Q  +N++H I P ++ +KI +VI   L  D
Sbjct: 545 NEQGRVIMYADKITESMQFAIDETSRRRSIQEAYNEEHGITPTTINKKIRDVISATLETD 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                +    Q+  L+KK+    ++ L  +M  AA  L+FE A  +RD +  LK+ 
Sbjct: 605 EEKKPV----QKKKLTKKERARTIEQLEHEMKEAAKALDFERATELRDALFELKAE 656


>gi|254488276|ref|ZP_05101481.1| excinuclease ABC, B subunit [Roseobacter sp. GAI101]
 gi|214045145|gb|EEB85783.1| excinuclease ABC, B subunit [Roseobacter sp. GAI101]
          Length = 738

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/687 (61%), Positives = 528/687 (76%), Gaps = 6/687 (0%)

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           L +  +  L N       R        +    F + T++ P+GDQP AI +L +G+ S E
Sbjct: 9   LPERKDAYLSNPAPDVRERP-----KLEGGKRFVLSTEFDPAGDQPTAIKELSEGVLSGE 63

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q+LLG TG+GKTFTMAKVIE  QRPAI++APNK LAAQLY EFK FFP NAVEYFVSY
Sbjct: 64  RDQVLLGATGTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSY 123

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYV R+DT+IEKES INEQIDRMRHSATR+LLER+D I+++SVSCIYGIGSVE
Sbjct: 124 YDYYQPEAYVARSDTFIEKESQINEQIDRMRHSATRALLERDDVIIIASVSCIYGIGSVE 183

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y  M   LK G S +Q+++++ L+ Q YKR D    RGTFRV GDS+EIFP+HLED AW
Sbjct: 184 TYGAMTQDLKTGTSYDQRQVIADLIAQAYKRNDAAFQRGTFRVRGDSLEIFPAHLEDRAW 243

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+S FG ++E I+EF PLTG+K    + I++YANSHYVTP+PT+N A+  IK+EL+MRL 
Sbjct: 244 RLSFFGEELESITEFDPLTGEKTGTFDQIRVYANSHYVTPKPTMNQAVIGIKKELRMRLD 303

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           +L  EG+LLEAQRLEQR  +D+EMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP++
Sbjct: 304 QLVGEGKLLEAQRLEQRCNFDIEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDN 363

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +++F DESHV++PQI GMY+GD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ V
Sbjct: 364 AIVFADESHVSVPQIGGMYKGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFV 423

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATP +WE+EQ  G+  EQIIRPTGL+DP +EIR    QV+D+ DE+   A  G R L T
Sbjct: 424 SATPAAWEIEQTGGVFTEQIIRPTGLIDPMIEIRPVEMQVDDLLDEVRKVAADGYRTLCT 483

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           VLTKRMAEDLTEY++E+ IRVRYMHS++ T+ERIEI+RDLRLG FDVL+GINLLREGLDI
Sbjct: 484 VLTKRMAEDLTEYMHEQGIRVRYMHSDIDTIERIEILRDLRLGAFDVLIGINLLREGLDI 543

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECGLVAILDADKEGFLRS+TSLIQTIGRAARN   +VI+YAD IT S++ A+ ET RRR
Sbjct: 544 PECGLVAILDADKEGFLRSETSLIQTIGRAARNAEGRVIMYADRITGSMERAMGETDRRR 603

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
            KQ+ +N+ H I P +VK+ + +++  +   D     ++       L+    K  L  LR
Sbjct: 604 AKQVAYNELHGITPTTVKKNVDDILAGLYKGDVDMNRVTAKID-NPLAGGNLKTVLDGLR 662

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKS 795
             M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 663 TDMRKAAENLEFEEAARLRDEVKRLEA 689


>gi|95929119|ref|ZP_01311864.1| excinuclease ABC, B subunit [Desulfuromonas acetoxidans DSM 684]
 gi|95135020|gb|EAT16674.1| excinuclease ABC, B subunit [Desulfuromonas acetoxidans DSM 684]
          Length = 663

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/662 (55%), Positives = 486/662 (73%), Gaps = 1/662 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI +L++GI      Q+LLGVTGSGKTFTMA V+E +QRP +
Sbjct: 1   MAKFTLKSVYQPAGDQPKAIEELVEGIEDGAPHQVLLGVTGSGKTFTMANVVERVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLY EF+  FP+NAVEYFVSYYDYYQPEAYV  TDT+IEK+SSINE+ID+
Sbjct: 61  VLAHNKTLAAQLYGEFRELFPNNAVEYFVSYYDYYQPEAYVASTDTFIEKDSSINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSLL R D ++V+SVSCIYG+GS E+Y  M+V L++G  +E+  LL  LV+ QY
Sbjct: 121 LRHSATRSLLTRRDVLIVASVSCIYGLGSPEAYFGMLVGLEVGMELERNSLLKKLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D    RGTFRV GDS+EIFP++ ED+A R+  FG++I+ ISE  PL G  I  +   
Sbjct: 181 QRNDADFHRGTFRVRGDSVEIFPAYEEDLALRIEFFGDEIDAISEIDPLRGTVIDKLNKT 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV  RPTL  A+K I++EL+ R+       +L+EAQR+EQR  +D+E++E  G
Sbjct: 241 SIFPASHYVATRPTLERAIKQIQDELQQRITYFRDRNQLIEAQRIEQRTMFDIEVMEEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSRY+ GR  GEPP TLF+Y P+D+LLF+DESHV++ Q+  MYRGD  RK  L
Sbjct: 301 YCQGIENYSRYMDGRGEGEPPATLFDYFPDDALLFIDESHVSVSQVGAMYRGDRSRKENL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL+FEE+      T+ VSATP  +ELE+ QG++VEQI+RPTGLVDP
Sbjct: 361 VGYGFRLPSALDNRPLKFEEFESKNLQTVYVSATPADYELEKAQGVVVEQIVRPTGLVDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+EIR A+ QV+D+ ++I        RIL+T LTKRMAEDLT YL E  IRVRY+HS++ 
Sbjct: 421 PIEIRPAQQQVDDLVEQIRDTIATQARILVTTLTKRMAEDLTGYLEEIGIRVRYLHSDID 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIR LR G FDVL+GINLLREGLDIPE GLV ILDADKEGFLRS+ SLIQT GR
Sbjct: 481 TVERMEIIRGLRQGDFDVLIGINLLREGLDIPEVGLVTILDADKEGFLRSERSLIQTCGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ +VI+YAD IT+S+Q  +DET RRR++QL  N +H I P+SV + +  +++ + 
Sbjct: 541 AARNVDGRVIMYADRITRSMQACLDETERRRQQQLAFNAEHGIVPKSVSKSMRTILEDLK 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
              A    ++ +      S  + +  + ++RK+M  AA  LNFE+AA +RD++ +L+   
Sbjct: 601 GVSAEVAQVAEELADWH-SPAELRKKINAVRKEMLAAAAELNFEQAAELRDQLLKLEKQE 659

Query: 798 YF 799
             
Sbjct: 660 LG 661


>gi|89098752|ref|ZP_01171633.1| excinuclease ABC subunit B [Bacillus sp. NRRL B-14911]
 gi|89086428|gb|EAR65548.1| excinuclease ABC subunit B [Bacillus sp. NRRL B-14911]
          Length = 659

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 480/656 (73%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI+++++GI S ++ Q LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 5   FELVSKYSPQGDQPEAISRIVEGIRSGKRHQTLLGATGTGKTFTISNVIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y ++++ L+ G  +E+ +LL  LV  QY+R 
Sbjct: 125 SATSSLFERKDVIIIASVSCIYGLGSPEEYKELVLSLRTGMEIERNQLLRRLVDIQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ +   E + I+
Sbjct: 185 DIDFRRGTFRVRGDVVEIFPASRDEHCMRVEFFGDEIDRIREVDALTGEIMGEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I++EL+ RL E+ + G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKIAIGNIEKELEERLEEMRENGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ VDESHVTIPQ+ GM+ GD  RK+ L ++
Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDYFPDDFLMVVDESHVTIPQVRGMFNGDQARKSVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL F E+       + VSATPG +E+E     +V+QIIRPTGL+DP +E
Sbjct: 365 GFRLPSAMDNRPLTFPEFEKHINQIVYVSATPGPYEIEHTPE-MVQQIIRPTGLLDPTIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+L+T LTK+M+EDLT+YL E  I+V+Y+HSEVKTLE
Sbjct: 424 VRPIEGQIDDLIGEINDRVKKNERVLITTLTKKMSEDLTDYLKEIGIKVQYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIR+LRLGK+DVL+GINLLREGLDIPE  LV+ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRELRLGKYDVLIGINLLREGLDIPEVSLVSILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD IT S++LAI ET RRRE Q  +N++H I PQ+++++I +VI      +
Sbjct: 544 NASGHVIMYADKITNSMELAISETKRRREIQEAYNEEHGITPQTIQKEIRDVIRATHAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
               + +  A+   ++KK+    + ++ K+M  AA  LNFE AA +RD +  LK+ 
Sbjct: 604 E-QADYAAPAKPAKMTKKERDKLIANMEKEMKEAAKALNFERAAELRDLLLELKAE 658


>gi|313890967|ref|ZP_07824589.1| excinuclease ABC, B subunit [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313120691|gb|EFR43808.1| excinuclease ABC, B subunit [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 663

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/659 (53%), Positives = 475/659 (72%), Gaps = 3/659 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           ++   F + + Y PSGDQP AIA+L+  I   EK Q+LLG TG+GKTFTM++VI  + +P
Sbjct: 5   RENNTFHLVSKYQPSGDQPQAIAELVDNIEGGEKAQILLGATGTGKTFTMSQVINQVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL+ LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNQLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ +   E
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKVLGEAE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL+ +L   E EG+LLEAQRL+QR  YD+EML  
Sbjct: 245 HLILFPATHFVTNDEHMEASITKIQAELEQQLKLFESEGKLLEAQRLKQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRSAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKK 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+ Q    ++EQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMAQT-DTVIEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +E+R +  Q++D+  EIN  + +G R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPVIEVRPSMGQMDDLLGEINSRSAKGERCFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN   +VI+YAD +T S+Q AIDET RRR  Q+++N+KH I PQ++K+ I ++I  
Sbjct: 544 GRAARNSEGRVIMYADKMTDSMQKAIDETARRRHIQMDYNEKHGIVPQTIKKDIRDLIAI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                +     S+D    S+++ + K  +K L+KQM  AA+ L+FE AA IRD I  LK
Sbjct: 604 TKEVGSEIAEESVD--YTSMNRTERKEAIKKLQKQMQEAAEMLDFELAAEIRDLILELK 660


>gi|330951646|gb|EGH51906.1| excinuclease ABC subunit B [Pseudomonas syringae Cit 7]
          Length = 671

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/670 (55%), Positives = 485/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +
Sbjct: 1   MSEFQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+I+P+  +  A RV +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLIEAMEGIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G IVEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR A TQV+D+  EI+       R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ 
Sbjct: 420 QIEIRPALTQVDDLLSEIHKRTALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S++ AI ET RRREKQL  N +H I P+ V + + ++++   
Sbjct: 540 AARNLNGRAILYADRITGSMERAIGETERRREKQLAFNLEHGITPKGVFKDVADIMEGAT 599

Query: 738 LEDAATTNISIDAQQLS---------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  + +      A+             S  +    ++ L ++M+  A +L FE AA++RD
Sbjct: 600 VPGSRSKKRKGMAKAAEENARYENELRSPSEINKRIRQLEEKMYQLARDLEFEAAAQMRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EIGKLRERLL 669


>gi|225868289|ref|YP_002744237.1| UvrABC system protein B (UvrB protein) [Streptococcus equi subsp.
           zooepidemicus]
 gi|259710333|sp|C0MDC6|UVRB_STRS7 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|225701565|emb|CAW98790.1| UvrABC system protein B (UvrB protein) [Streptococcus equi subsp.
           zooepidemicus]
          Length = 663

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/660 (53%), Positives = 475/660 (71%), Gaps = 3/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +D   F++ + Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P
Sbjct: 5   RDFKAFKLVSKYDPSGDQPQAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + + +LL++LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDQLLNALVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ + + +
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKVLGDAD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML  
Sbjct: 245 HLVLFPATHFVTNDEHMEQSISKIQAELADQLKLFEAEGKLLEAQRLRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTNGVENYSRHMDGRSAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDKARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ    IVEQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQT-DTIVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R +  Q++D+  EINL  ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEVEVRPSMGQMDDLLGEINLRIERGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN +  VI+YAD +T S+Q AIDET RRR  Q+ +N++H I PQ++K+ I ++I  
Sbjct: 544 GRAARNADGHVIMYADRMTDSMQRAIDETARRRAIQMAYNEEHGIIPQTIKKDIRDLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               +A  T    +    S+++ + +  +K L+K M  AA+ L+FE AA++RD I  LK+
Sbjct: 604 SRAVEAKATE--AETNYESMTRSERQEAIKQLQKNMQEAAELLDFELAAQLRDLILELKA 661


>gi|149012289|ref|ZP_01833358.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP19-BS75]
 gi|168484866|ref|ZP_02709811.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC1873-00]
 gi|168491159|ref|ZP_02715302.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC0288-04]
 gi|168493160|ref|ZP_02717303.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC3059-06]
 gi|194396794|ref|YP_002037839.1| excinuclease ABC subunit B [Streptococcus pneumoniae G54]
 gi|225859033|ref|YP_002740543.1| excinuclease ABC subunit B [Streptococcus pneumoniae 70585]
 gi|226698341|sp|B5E4X3|UVRB_STRP4 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|254764910|sp|C1C7L7|UVRB_STRP7 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|147763615|gb|EDK70550.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP19-BS75]
 gi|172041982|gb|EDT50028.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC1873-00]
 gi|183574497|gb|EDT95025.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC0288-04]
 gi|183576633|gb|EDT97161.1| excinuclease ABC, B subunit [Streptococcus pneumoniae CDC3059-06]
 gi|194356461|gb|ACF54909.1| excinuclease ABC, B subunit [Streptococcus pneumoniae G54]
 gi|225719975|gb|ACO15829.1| excinuclease ABC, B subunit [Streptococcus pneumoniae 70585]
 gi|332201701|gb|EGJ15771.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA47368]
          Length = 662

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAVAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|254452131|ref|ZP_05065568.1| excinuclease ABC, B subunit [Octadecabacter antarcticus 238]
 gi|198266537|gb|EDY90807.1| excinuclease ABC, B subunit [Octadecabacter antarcticus 238]
          Length = 739

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/687 (61%), Positives = 533/687 (77%), Gaps = 3/687 (0%)

Query: 111 QSDNPLLKNGKIWTPHRSWSINNHSK--DITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           Q+D     + + +  + +  +    K      F ++TD+ P+GDQP AI +L +GI + E
Sbjct: 5   QTDKSDKSDPEQFLANPAPDVKTREKLEGGRAFVLKTDFEPAGDQPTAIKELCEGIRNGE 64

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q+LLG TG+GKTFTMAK+IE  QRPAI++APNK LAAQLY EFK FFP  +VEYFVS+
Sbjct: 65  RDQVLLGATGTGKTFTMAKMIEKTQRPAIILAPNKTLAAQLYGEFKGFFPDASVEYFVSF 124

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYV R+DT+IEKES INEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 125 YDYYQPEAYVARSDTFIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE 184

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y  M   L  G+   Q+++++ L+ Q YKR D G  RGTFRV GDS+E++P+HL+D AW
Sbjct: 185 TYGAMTQDLHAGEEYNQRQIMTDLIAQAYKRNDAGFQRGTFRVRGDSLEVWPAHLDDRAW 244

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           ++S FG ++E I+EF PLTG+K    E ++IYANSHYVTP+PT+  A+  IK+ELKMRL 
Sbjct: 245 KLSFFGEELEAITEFDPLTGEKTDTFEKVRIYANSHYVTPKPTMKQAIVGIKKELKMRLD 304

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           +L  EG+LLEAQRLEQR  +DLEMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP++
Sbjct: 305 QLVNEGKLLEAQRLEQRCNFDLEMLEATGVCNGIENYSRYLTGRMPGEPPPTLFEFIPDN 364

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +++F DESHV++PQI GMY+GDF RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ V
Sbjct: 365 AIVFADESHVSVPQIGGMYKGDFRRKMTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFV 424

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATP +WE+EQ  G+  EQIIRPTGL+DP +EIR   TQV+DV DEI   + +G R L+T
Sbjct: 425 SATPAAWEMEQTGGVFTEQIIRPTGLLDPMIEIRPVDTQVDDVMDEIRRVSAKGFRTLVT 484

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
            LTKRMAEDLTEYL+E  I+VRYMHS++ T+ERIEI+RDLRLG FDVL+GINLLREGLDI
Sbjct: 485 TLTKRMAEDLTEYLHENGIKVRYMHSDIDTIERIEILRDLRLGAFDVLIGINLLREGLDI 544

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PECGLVAILDADKEGFLRS+TSLIQTIGRAARN   +VI+YAD IT S++ AI ET RRR
Sbjct: 545 PECGLVAILDADKEGFLRSETSLIQTIGRAARNAEGRVIMYADRITGSMERAIGETDRRR 604

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
           ++Q+ +N+KH I P +VK+ + +++  +   D     ++       L+    K  L+ LR
Sbjct: 605 DRQIAYNEKHGITPTTVKKNVDDILAGLYKGDVDMNRVTATID-APLAGANLKTVLQGLR 663

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKS 795
             M  AA+NL FEEAAR+RDE+KRL++
Sbjct: 664 TDMRKAAENLEFEEAARLRDEVKRLET 690


>gi|238920712|ref|YP_002934227.1| excinuclease ABC subunit B [Edwardsiella ictaluri 93-146]
 gi|259710325|sp|C5BEJ2|UVRB_EDWI9 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238870281|gb|ACR69992.1| excinuclease ABC subunit B, putative [Edwardsiella ictaluri 93-146]
          Length = 672

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/664 (56%), Positives = 474/664 (71%), Gaps = 7/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +VMA
Sbjct: 5   FKLHSAFQPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKQFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRSILRRLSELQYVRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A RV +F +++E +S F PLTGQ +R V    +Y
Sbjct: 185 DQAFARGTFRVRGEVIDIFPAEADDEALRVELFDDEVERLSLFDPLTGQLLRTVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ I+ EL MR   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEAIRAELAMRRQSLLASNKLLEEQRLAQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++EL++  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGNYELDKSGGEVIDQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EINL A  G R+L+T LTKRMAEDLTEYL E  +RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEINLRAAIGERVLVTTLTKRMAEDLTEYLEEHGVRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FD LVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDALVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           N+N K ILYAD IT S+  AI ET RRRE+Q   N  H I PQ++ +K+ +++       
Sbjct: 545 NLNGKAILYADKITPSMARAIGETERRRERQQAFNLAHGITPQALNKKVTDILQLGDGPV 604

Query: 735 -PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                               +LS K+ +  ++ L  QM+  A NL FE+AA +RDEI  L
Sbjct: 605 RSRTKGARGQRAAEPHPDYHTLSAKQIEQQIQRLETQMYQHAQNLEFEQAAALRDEIHIL 664

Query: 794 KSSP 797
           +   
Sbjct: 665 REQF 668


>gi|117924009|ref|YP_864626.1| excinuclease ABC subunit B [Magnetococcus sp. MC-1]
 gi|117607765|gb|ABK43220.1| Excinuclease ABC subunit B [Magnetococcus sp. MC-1]
          Length = 675

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/668 (59%), Positives = 497/668 (74%), Gaps = 9/668 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AI +L+ G+    K Q+LLGVTGSGKTFTMA +I+ ++RPA+++A
Sbjct: 8   FELISDYQPCGDQPQAIEKLVAGLREGRKDQVLLGVTGSGKTFTMANIIQRLERPAVILA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K+FFP+NAVEYFVSYYDYYQPEAYVPRTDT+IEK+SSINEQIDRMRH
Sbjct: 68  HNKTLAGQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPRTDTFIEKDSSINEQIDRMRH 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +ATR+LL R D I+V+SVSCIYG+GS ESY+ M ++L++   +EQ+E++  LV  QY+R 
Sbjct: 128 AATRALLTRQDVIIVASVSCIYGLGSPESYAAMSLKLEVEQEIEQREIMRKLVAMQYQRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD++EIFP+H +  A RV +FG+ I+ ISE  PLTG+          +
Sbjct: 188 DIDFQRGTFRVRGDTLEIFPAHEDARAIRVELFGDVIDRISEVDPLTGENFGPAPHASFF 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT R T+  A++ IK ELK RL    ++G LLEAQRLE R   DLEM++  G C 
Sbjct: 248 PASHYVTQRSTIVRAVEGIKAELKERLESFNQQGYLLEAQRLENRTRQDLEMMQELGYCT 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGEPPPTLFEY+PE++LLFVDESHVT+ Q+  MYRGD  RK+TL EY
Sbjct: 308 GIENYSRFLTGRQPGEPPPTLFEYLPENALLFVDESHVTVSQVRAMYRGDRSRKSTLVEY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+FEEW  +RP TI VSATP  WELEQ QG +VEQIIRPTGL+DPPVE
Sbjct: 368 GFRLPSAMDNRPLQFEEWEQMRPQTIYVSATPALWELEQAQGQVVEQIIRPTGLMDPPVE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  EI      G R+L T LTKRMAEDLT+YL + +I+VRY+HS++ TLE
Sbjct: 428 IRPVEHQVDDLIHEIKKVIATGYRVLATTLTKRMAEDLTDYLVDLDIKVRYLHSDIDTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVL+GINLLREGLDIPE GLVAILDADKEGFLRS+TSL+QTIGRAAR
Sbjct: 488 RMEIIRDLRLGAFDVLIGINLLREGLDIPEVGLVAILDADKEGFLRSETSLVQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +VILYAD  T SI+ A+ ET RRR  Q  +N++HNI PQSV   + +++  +   D
Sbjct: 548 NVEGRVILYADKRTGSIERALAETDRRRAIQQHYNEQHNITPQSVVRGVADLMGEMTGGD 607

Query: 741 AATTNISIDAQQ---------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           + + + +    +         + L  K  +  +++L K+MH AA  LNFE+AA  RD+I 
Sbjct: 608 STSKSAAKGRGKQVAALQEPVVPLHGKALEKRIRALEKEMHDAASALNFEQAALFRDQII 667

Query: 792 RLKSSPYF 799
            L+ +   
Sbjct: 668 ALEKASLL 675


>gi|139473634|ref|YP_001128350.1| excinuclease ABC subunit B [Streptococcus pyogenes str. Manfredo]
 gi|189038004|sp|A2RE43|UVRB_STRPG RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|134271881|emb|CAM30118.1| UvrABC system protein B (UvrB protein) [Streptococcus pyogenes str.
           Manfredo]
          Length = 663

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/659 (53%), Positives = 470/659 (71%), Gaps = 3/659 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +D   F++++ Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P
Sbjct: 5   RDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + +  LL+ LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTG+ I  V+
Sbjct: 185 QFERNDIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML  
Sbjct: 245 HLVLFPATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTSGVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+ Q    I+EQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGEYEMSQT-NTIIEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +++R +  Q++D+  EIN    +  R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEIDVRPSMGQIDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+  VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I  +I  
Sbjct: 544 GRAARNVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   +   +D    S+S+ + K  + +L+KQM  AA+ L+FE AA++RD I  LK
Sbjct: 604 SKTSHNDISKEEMD--YESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660


>gi|225574842|ref|ZP_03783452.1| hypothetical protein RUMHYD_02920 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037916|gb|EEG48162.1| hypothetical protein RUMHYD_02920 [Blautia hydrogenotrophica DSM
           10507]
          Length = 669

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/663 (51%), Positives = 472/663 (71%), Gaps = 3/663 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
            K    F + ++Y P+GDQP AI +L+KG     + Q LLGVTGSGKTFTMA VIE +Q+
Sbjct: 2   EKKEKLFHLVSEYKPTGDQPEAIKKLVKGFKEGNQCQTLLGVTGSGKTFTMANVIEQLQK 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++A NK LAAQLY EFK FFP N+VEYFVSYYDYYQPEAYVP TDTYI K+SSIN++
Sbjct: 62  PTLIIAHNKTLAAQLYGEFKEFFPDNSVEYFVSYYDYYQPEAYVPSTDTYIAKDSSINDE 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I+++R SAT +L ER D I++SSVSCIYG+GS + Y  M++ L+ G + ++ E++  L+ 
Sbjct: 122 IEKLRLSATAALSERRDVIIISSVSCIYGLGSPDDYQNMVISLRPGMTKDRDEVIRQLID 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R ++   RGTFRV GD +EIFP+   + A RV  FG++++ ISE   LTG+    +
Sbjct: 182 IQYTRNEMDFQRGTFRVRGDVLEIFPADYSESAIRVEFFGDEVDRISEVDVLTGEIKCEL 241

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
             I ++  SHYV P   +  A   I++EL  R+   + E +LLEAQR+ +R  +D+EM++
Sbjct: 242 NHIAVFPASHYVVPMEQILKAADEIEKELAQRVSYFKGEDKLLEAQRISERTNFDVEMMK 301

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            TG C  IENYSR+L+G  PGEPP TL +Y  +D L+ +DESH T+PQI GMY GD  RK
Sbjct: 302 ETGFCSGIENYSRHLSGLAPGEPPYTLVDYFGDDFLIIIDESHKTVPQIRGMYAGDQSRK 361

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS  DNRPL F+E+       + VSATPG +E E  + +  EQIIRPTGL
Sbjct: 362 QTLVDYGFRLPSAKDNRPLNFQEFESKIDQILFVSATPGEYEEEH-ELLRAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP VE+R    Q++D+  E+N   ++  ++L+T LTKRMAEDLT+Y+ +  IRV+Y+HS
Sbjct: 421 LDPKVEVRPVEGQIDDLVSEVNKEVEKHHKVLITTLTKRMAEDLTDYMRDLGIRVKYLHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ TLER +IIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQT
Sbjct: 481 DIDTLERTQIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN   +V++YAD +T S+++AIDET RRR  Q  +N++H I P+++++ + ++I 
Sbjct: 541 IGRAARNSEGRVLMYADVMTDSMRMAIDETERRRALQEAYNQEHGITPKTIQKSVRDLIS 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                    + +  D +  S+SKK+ +  ++ + KQM +AA +LNFE+AA++RD++  LK
Sbjct: 601 ISKAVAQTESQLEKDPE--SMSKKELEKLIQKVEKQMKVAAADLNFEQAAQLRDKMIELK 658

Query: 795 SSP 797
            + 
Sbjct: 659 KNL 661


>gi|121587374|ref|ZP_01677144.1| excinuclease ABC subunit B [Vibrio cholerae 2740-80]
 gi|121728166|ref|ZP_01681201.1| excinuclease ABC subunit B [Vibrio cholerae V52]
 gi|147673403|ref|YP_001216490.1| excinuclease ABC subunit B [Vibrio cholerae O395]
 gi|153215064|ref|ZP_01949781.1| excinuclease ABC subunit B [Vibrio cholerae 1587]
 gi|153819299|ref|ZP_01971966.1| excinuclease ABC subunit B [Vibrio cholerae NCTC 8457]
 gi|153823436|ref|ZP_01976103.1| excinuclease ABC subunit B [Vibrio cholerae B33]
 gi|153829535|ref|ZP_01982202.1| excinuclease ABC subunit B [Vibrio cholerae 623-39]
 gi|227081192|ref|YP_002809743.1| excinuclease ABC subunit B [Vibrio cholerae M66-2]
 gi|229505383|ref|ZP_04394893.1| excinuclease ABC subunit B [Vibrio cholerae BX 330286]
 gi|229510947|ref|ZP_04400426.1| excinuclease ABC subunit B [Vibrio cholerae B33]
 gi|229518068|ref|ZP_04407512.1| excinuclease ABC subunit B [Vibrio cholerae RC9]
 gi|229529888|ref|ZP_04419278.1| excinuclease ABC subunit B [Vibrio cholerae 12129(1)]
 gi|229608402|ref|YP_002879050.1| excinuclease ABC subunit B [Vibrio cholerae MJ-1236]
 gi|254848149|ref|ZP_05237499.1| excinuclease ABC subunit B [Vibrio cholerae MO10]
 gi|255745443|ref|ZP_05419391.1| excinuclease ABC subunit B [Vibrio cholera CIRS 101]
 gi|262151305|ref|ZP_06028440.1| excinuclease ABC subunit B [Vibrio cholerae INDRE 91/1]
 gi|262167225|ref|ZP_06034937.1| excinuclease ABC subunit B [Vibrio cholerae RC27]
 gi|298498869|ref|ZP_07008676.1| excinuclease ABC, B subunit [Vibrio cholerae MAK 757]
 gi|121548377|gb|EAX58439.1| excinuclease ABC subunit B [Vibrio cholerae 2740-80]
 gi|121629563|gb|EAX61986.1| excinuclease ABC subunit B [Vibrio cholerae V52]
 gi|124114927|gb|EAY33747.1| excinuclease ABC subunit B [Vibrio cholerae 1587]
 gi|126510159|gb|EAZ72753.1| excinuclease ABC subunit B [Vibrio cholerae NCTC 8457]
 gi|126519045|gb|EAZ76268.1| excinuclease ABC subunit B [Vibrio cholerae B33]
 gi|146315286|gb|ABQ19825.1| excinuclease ABC subunit B [Vibrio cholerae O395]
 gi|148874995|gb|EDL73130.1| excinuclease ABC subunit B [Vibrio cholerae 623-39]
 gi|227009080|gb|ACP05292.1| excinuclease ABC subunit B [Vibrio cholerae M66-2]
 gi|227012835|gb|ACP09045.1| excinuclease ABC subunit B [Vibrio cholerae O395]
 gi|229333662|gb|EEN99148.1| excinuclease ABC subunit B [Vibrio cholerae 12129(1)]
 gi|229344783|gb|EEO09757.1| excinuclease ABC subunit B [Vibrio cholerae RC9]
 gi|229350912|gb|EEO15853.1| excinuclease ABC subunit B [Vibrio cholerae B33]
 gi|229357606|gb|EEO22523.1| excinuclease ABC subunit B [Vibrio cholerae BX 330286]
 gi|229371057|gb|ACQ61480.1| excinuclease ABC subunit B [Vibrio cholerae MJ-1236]
 gi|254843854|gb|EET22268.1| excinuclease ABC subunit B [Vibrio cholerae MO10]
 gi|255736518|gb|EET91915.1| excinuclease ABC subunit B [Vibrio cholera CIRS 101]
 gi|262024369|gb|EEY43058.1| excinuclease ABC subunit B [Vibrio cholerae RC27]
 gi|262030921|gb|EEY49550.1| excinuclease ABC subunit B [Vibrio cholerae INDRE 91/1]
 gi|297543202|gb|EFH79252.1| excinuclease ABC, B subunit [Vibrio cholerae MAK 757]
 gi|327483735|gb|AEA78142.1| Excinuclease ABC subunit B [Vibrio cholerae LMA3894-4]
          Length = 676

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/669 (54%), Positives = 477/669 (71%), Gaps = 11/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF ++IE IS F PLTG    R++    I
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATP  +EL +  G + EQ++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++  I PQ +K  + ++++   + 
Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIA 604

Query: 740 DAATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            +                  A    L+ ++ +  +  L   M+  A NL FE AA+ RDE
Sbjct: 605 KSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRDE 664

Query: 790 IKRLKSSPY 798
           I +L+    
Sbjct: 665 IHQLRQQFI 673


>gi|251780462|ref|ZP_04823382.1| excinuclease ABC, B subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243084777|gb|EES50667.1| excinuclease ABC, B subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 657

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/660 (54%), Positives = 472/660 (71%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + P+GDQP AI  +LK I    + Q LLGVTGSGKTFTMA +IE +QRP +
Sbjct: 1   MGNFKIHSKFKPTGDQPKAIETILKSIKKGNEFQTLLGVTGSGKTFTMANIIEKLQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID+
Sbjct: 61  ILAHNKTLAAQLCSEFKEFFPENIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G+ + Y ++ + L+ G   E+ E++  L++ QY
Sbjct: 121 LRHSATSALFERRDVIIVASVSCIYGLGNPDEYKKLTISLRKGMQKERDEIIKKLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD ++I PS       R+  FG++I+ I EF  LTG  +     +
Sbjct: 181 ERNDIDFSRGTFRVRGDLLDIIPSSTSSKGIRIEFFGDEIDRIREFDVLTGTILGERNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+ T + T+  ++  I+ EL+ RL EL  + +LLEAQRL QR  +D+EM+   G
Sbjct: 241 SIFPASHFATSKETVERSLGEIENELENRLRELNSQEKLLEAQRLRQRTNFDIEMIREMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L GR PG PP TL +Y PED LLF+DESHVT+PQ+  MY GD  RK TL
Sbjct: 301 YCSGIENYSRILDGRAPGTPPKTLIDYFPEDFLLFIDESHVTLPQVRAMYAGDRSRKNTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLP   DNRPL+FEE+       + VSATP  +ELE  Q  I EQ+IRPTGL+DP
Sbjct: 361 VDYGFRLPCAYDNRPLKFEEFEKKINQVMFVSATPAQYELEHSQS-IAEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + I+  + Q++D+Y EI     +G RIL+T LTKRMAEDLT+Y+ E  ++  YMHS++ 
Sbjct: 420 EIIIKPVKGQIDDLYTEIQETISRGYRILITTLTKRMAEDLTKYMSELGVKATYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++IIRDLRLG++DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMKIIRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+YAD ITKS++ AI ET RRR+ Q E+N++H I PQ++ +++ ++I+   
Sbjct: 540 AARNSESKVIMYADNITKSMKKAISETERRRKIQTEYNEEHGIIPQTINKEVRDLIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + + +T          SL+KK+ K  +K   ++M LAA NL FE AA++RDEI+ LK   
Sbjct: 600 VAEESTEY--GIETTKSLTKKEVKKLIKEYTEEMMLAAKNLQFERAAQLRDEIEELKGKE 657


>gi|26988700|ref|NP_744125.1| excinuclease ABC subunit B [Pseudomonas putida KT2440]
 gi|81840710|sp|Q88LF9|UVRB_PSEPK RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|24983488|gb|AAN67589.1|AE016388_9 excinuclease ABC, B subunit [Pseudomonas putida KT2440]
 gi|313499918|gb|ADR61284.1| UvrB [Pseudomonas putida BIRD-1]
          Length = 671

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/670 (55%), Positives = 487/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI+ +QRP +
Sbjct: 1   MSEFQLVTRFQPAGDQPEAIRQLVEGIEAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   R TFRV GD I+IFP+  +  A R+ +F +++E I+ F PLTG+  R +   
Sbjct: 181 TRNEMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVFRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A++ IKEELK RL  L K  +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLLEAVEGIKEELKERLEYLHKANKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTL++Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFR+PS +DNRP+RF+EW  + P TI VSATPG +E E   G +VEQ++RPTGLVDP
Sbjct: 361 VEYGFRMPSALDNRPMRFDEWEDVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R A TQV+D+  EI      G R+L T LTKRMAEDL++YL + ++RVRY+HS++ 
Sbjct: 420 QVEVRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD +T S+Q AIDET RRREKQ+  N+ + I P+ V + I ++++   
Sbjct: 540 AARNLNGRAILYADNVTGSMQRAIDETERRREKQIAFNEANGIVPKGVVKDITDIMEGAT 599

Query: 738 LEDAATTNISIDAQQLSLSKK---------KGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  A +      A+    S +         +    +K L ++M   A +L FE AA++RD
Sbjct: 600 VPGARSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EIAQLRERLI 669


>gi|213970442|ref|ZP_03398570.1| excinuclease ABC, B subunit [Pseudomonas syringae pv. tomato T1]
 gi|301385866|ref|ZP_07234284.1| excinuclease ABC subunit B [Pseudomonas syringae pv. tomato Max13]
 gi|302063920|ref|ZP_07255461.1| excinuclease ABC subunit B [Pseudomonas syringae pv. tomato K40]
 gi|302130087|ref|ZP_07256077.1| excinuclease ABC subunit B [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213924760|gb|EEB58327.1| excinuclease ABC, B subunit [Pseudomonas syringae pv. tomato T1]
 gi|330875745|gb|EGH09894.1| excinuclease ABC subunit B [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 671

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/670 (55%), Positives = 486/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +
Sbjct: 1   MSEFQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLRMVLHVDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+I+P+  +  A R+ +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLVEAMEGIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G IVEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR A TQV+D+  EI+  A    R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ 
Sbjct: 420 QIEIRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S++ AI ET RRREKQ+  N +H I P+ V + + ++++   
Sbjct: 540 AARNLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGAT 599

Query: 738 LEDAATTNISIDAQQLS---------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  + +      A+             S  +    ++ L ++M+  A +L FE AA++RD
Sbjct: 600 VPGSRSKKRKGMAKAAEENARYENELRSPSEINKRIRQLEEKMYQLARDLEFEAAAQMRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EIGKLRERLL 669


>gi|212635179|ref|YP_002311704.1| excinuclease ABC subunit B [Shewanella piezotolerans WP3]
 gi|212556663|gb|ACJ29117.1| Excinuclease ABC, B subunit [Shewanella piezotolerans WP3]
          Length = 667

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/662 (53%), Positives = 473/662 (71%), Gaps = 2/662 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ Y P+GDQP AI QL+ G+ S    Q LLGVTGSGKTFT+A VIE M RP I+
Sbjct: 4   SVFQLESQYKPAGDQPTAINQLVDGLESGLASQTLLGVTGSGKTFTIANVIEKMARPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP T T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTGTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ G  ++Q+++L  L + QY 
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPKSYMKMLLHLREGAIMDQRDMLKRLSELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGT+RV G+ I++FP+  +  A RV +F ++IE +S F PLTG  ++ +  I 
Sbjct: 184 RNDIELQRGTYRVRGEVIDVFPADSDKHAIRVELFDDEIERLSLFDPLTGHIMKRIARIT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYVTPR ++  A ++IKEEL+ R  +L    +L+E QR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKSHYVTPRESILAATEHIKEELRERKKQLLDLNKLIEEQRITERVQYDVEMMTELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  G+ PPTL +Y+PED LL +DESHVT+PQI  MY+GD  RK  L 
Sbjct: 304 CSGIENYSRYLSGRASGDGPPTLLDYLPEDGLLIIDESHVTVPQIGAMYKGDRSRKMNLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P +I VSATP  +E+ + +G + EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEALMPQSIFVSATPSEYEINRSEGEVAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    QV+D+  EI        R+L+T LTKRM+EDL+EYL E  ++VRY+HS++ T
Sbjct: 424 IEVRPVGIQVDDLLSEIGKRVAVNERVLVTTLTKRMSEDLSEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVL+GINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGVFDVLIGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILY D ITKS+  AI ET RRRE Q ++N  + I P+ V ++I +V+D    
Sbjct: 544 ARNVNGKVILYGDRITKSMDKAITETNRRREMQHQYNLDNGITPKGVIKRITDVMDVGDS 603

Query: 739 EDAATTNISIDAQQLS--LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           ++ ++    +                 +  L KQMH  A NL FEEAA +RD + RL+  
Sbjct: 604 DNVSSEFAKVAESDADYHAKPADISHEIDKLEKQMHEHAKNLEFEEAAALRDRVGRLREK 663

Query: 797 PY 798
             
Sbjct: 664 FI 665


>gi|167572218|ref|ZP_02365092.1| excinuclease ABC subunit B [Burkholderia oklahomensis C6786]
          Length = 696

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/671 (54%), Positives = 481/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKT+TMA  I  + RPA
Sbjct: 21  DGSPFQLYQPYPPAGDQPTAITTLVEGVEDGLSFQTLLGVTGSGKTYTMANAIARLGRPA 80

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 81  IVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 140

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L++GD + Q+E+++ L+  Q
Sbjct: 141 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRLGDKIGQREVIARLIAMQ 200

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG+  + +  
Sbjct: 201 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDSLHLFDPLTGRVRQKIPR 260

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IKEEL+ RL    +EG+L+EAQRLEQR  +DLEML+  
Sbjct: 261 FTVYPSSHYVTPRETVMRAVETIKEELRERLEFFHREGKLVEAQRLEQRTRFDLEMLQEL 320

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 321 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYNGDRARKEN 380

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL+F E+       + VSATP  +E     G   EQ++RPTGLVD
Sbjct: 381 LVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYEQRVS-GQTAEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 440 PAIEVRPASTQVDDVLSEITERVKADERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYAD IT S++ AIDET RRR KQ+  N++  I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGKAILYADRITDSMRRAIDETERRRAKQIAFNEQMGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA+ RD++  L
Sbjct: 620 YNADEARAELKEAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAQTRDQLALL 679

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 680 RERVFGANVGD 690


>gi|148548992|ref|YP_001269094.1| excinuclease ABC subunit B [Pseudomonas putida F1]
 gi|148513050|gb|ABQ79910.1| Excinuclease ABC subunit B [Pseudomonas putida F1]
          Length = 671

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/670 (55%), Positives = 487/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI+ +QRP +
Sbjct: 1   MSEFQLVTRFQPAGDQPEAIRQLVEGIEAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   R TFRV GD I+IFP+  +  A R+ +F +++E I+ F PLTG+  R +   
Sbjct: 181 TRNEMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVFRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A++ IKEELK RL  L K  +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLLEAVEGIKEELKERLEYLHKANKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTL++Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFR+PS +DNRP+RF+EW  + P TI VSATPG +E E   G +VEQ++RPTGLVDP
Sbjct: 361 VEYGFRMPSALDNRPMRFDEWEDVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R A TQV+D+  EI      G R+L T LTKRMAEDL++YL + ++RVRY+HS++ 
Sbjct: 420 QVEVRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD +T S+Q AIDET RRREKQ+  N+ + I P+ V + I ++++   
Sbjct: 540 AARNLNGRAILYADNVTGSMQRAIDETERRREKQIAFNEANGIVPKGVVKDITDIMEGAA 599

Query: 738 LEDAATTNISIDAQQLSLSKK---------KGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  A +      A+    S +         +    +K L ++M   A +L FE AA++RD
Sbjct: 600 VPGARSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EIAQLRERLI 669


>gi|157369560|ref|YP_001477549.1| excinuclease ABC subunit B [Serratia proteamaculans 568]
 gi|189037998|sp|A8GBD1|UVRB_SERP5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|157321324|gb|ABV40421.1| excinuclease ABC, B subunit [Serratia proteamaculans 568]
          Length = 670

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/665 (54%), Positives = 468/665 (70%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +++ P+GDQP AI++L +G+      Q LLGVTGSGKTFT+A VI  + RP +V
Sbjct: 3   KVFKLHSEFKPAGDQPQAISKLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++++NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    R TFRV G+ I++FP+  +++A R+ +F  ++E +S F PLTGQ  + V+   
Sbjct: 183 RNDQAFQRATFRVRGEVIDVFPAESDELALRIELFDEEVERLSLFDPLTGQIEQVVQRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYVTPR  +  AM+ IK +L  R   L    +LLE QRL QR  +DLEM++  G 
Sbjct: 243 IYPKSHYVTPRERILQAMEEIKVDLAERRKVLLANNKLLEEQRLTQRTQFDLEMMKELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GEPPPTLF+Y+P D LL VDESHVTIPQI  MY+GD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRKEGEPPPTLFDYLPADGLLVVDESHVTIPQIGAMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGDDIIDQVVRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI        R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVTTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DP 735
           ARN+N K ILY D IT S+  AI ET RRR KQ   N+++ I PQ + +K+ +V+    P
Sbjct: 543 ARNLNGKAILYGDRITDSMARAISETERRRAKQQAFNEENGIVPQGLNKKVSDVLQLGKP 602

Query: 736 ILLEDAATTNISID--AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                      + +   Q  +L+ K     ++ L  QM+  A NL FE AA +RDEI +L
Sbjct: 603 GNRGKGRGKGKAAENVGQYKNLTPKALDQKIRELEAQMYTHAQNLEFELAAGLRDEIHQL 662

Query: 794 KSSPY 798
           +    
Sbjct: 663 REQFI 667


>gi|327460184|gb|EGF06521.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK1057]
          Length = 662

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/655 (54%), Positives = 473/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q  +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQTAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|306825137|ref|ZP_07458479.1| excision endonuclease subunit UvrB [Streptococcus sp. oral taxon
           071 str. 73H25AP]
 gi|304432573|gb|EFM35547.1| excision endonuclease subunit UvrB [Streptococcus sp. oral taxon
           071 str. 73H25AP]
          Length = 662

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI +L+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYEPSGDQPQAIERLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A T     +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVTKEEDKEIDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|153800908|ref|ZP_01955494.1| excinuclease ABC subunit B [Vibrio cholerae MZO-3]
 gi|229515404|ref|ZP_04404863.1| excinuclease ABC subunit B [Vibrio cholerae TMA 21]
 gi|229525631|ref|ZP_04415036.1| excinuclease ABC subunit B [Vibrio cholerae bv. albensis VL426]
 gi|124123499|gb|EAY42242.1| excinuclease ABC subunit B [Vibrio cholerae MZO-3]
 gi|229339212|gb|EEO04229.1| excinuclease ABC subunit B [Vibrio cholerae bv. albensis VL426]
 gi|229347173|gb|EEO12133.1| excinuclease ABC subunit B [Vibrio cholerae TMA 21]
          Length = 676

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/669 (54%), Positives = 477/669 (71%), Gaps = 11/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG    R++    I
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLARFTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATP  +EL +  G + EQ++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++  I PQ +K  + ++++   + 
Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIA 604

Query: 740 DAATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            +                  A    L+ ++ +  +  L   M+  A NL FE AA+ RDE
Sbjct: 605 KSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRDE 664

Query: 790 IKRLKSSPY 798
           I +L+    
Sbjct: 665 IHQLRQQFI 673


>gi|319891759|ref|YP_004148634.1| Excinuclease ABC subunit B [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161455|gb|ADV04998.1| Excinuclease ABC subunit B [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323465072|gb|ADX77225.1| excinuclease ABC subunit B [Staphylococcus pseudintermedius ED99]
          Length = 660

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/656 (52%), Positives = 471/656 (71%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P GDQP AI  L+KGI   ++ Q LLG TG+GKTFTM+ VI+ + +P +++A
Sbjct: 6   FKIASNFEPQGDQPQAIKALVKGIEEGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 66  HNKTLAGQLYSEFKTFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+++SVSCIYG+G+ + Y  ++V +++G  +++ ELL  LV  QY R 
Sbjct: 126 SATSALFERDDVIIIASVSCIYGLGNPDEYRDLVVSIRVGMEMDRSELLRKLVDVQYTRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  E++  RV  FG++++ ISE   LTG+ ++  E   ++
Sbjct: 186 DIDFRRGTFRVRGDVVEIFPASREELCIRVEFFGDEVDRISEINYLTGEVLKEREHFALF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ +L  L  E +LLEAQRLEQR  YDLEM+   G   
Sbjct: 246 PASHFVTREEKMKIAIERIEKELEEQLAYLRSENKLLEAQRLEQRTNYDLEMMREMGFTS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQI GMY GD  RK  L E+
Sbjct: 306 GIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQIRGMYNGDQARKQVLVEH 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +E+E    +I EQIIRPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLKFEEFEQKAKQLVYVSATPGPYEIEHTDEMI-EQIIRPTGLLDPKIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    +QG R+L+T LTK+M+EDLT YL E  ++V Y+HSE+KTLE
Sbjct: 425 VRPTKNQIDDLLSEIQERTEQGERVLITTLTKKMSEDLTTYLKEAGVKVNYLHSEIKTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G FDVL+GINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 485 RIEIIRDLRMGTFDVLIGINLLREGLDIPEVSLVVILDADKEGFLRSERSLIQTMGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S+++AIDET RRRE Q+ +N+KH I P+++ ++I +VI   +  D
Sbjct: 545 NDKGHVIMYADRITDSMKVAIDETERRREIQIAYNEKHGIVPKTINKEIHDVISATVETD 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
               +   +  +  ++KK+ +  ++++ K+M  AA  L+FE A  +RD +  LKS 
Sbjct: 605 ETNEDQRKEVPK-KMTKKEREKTIENVEKEMKEAAKALDFERATELRDLLFELKSK 659


>gi|197116550|ref|YP_002136977.1| excinuclease ABC subunit B [Geobacter bemidjiensis Bem]
 gi|197085910|gb|ACH37181.1| excinuclease ABC, B subunit [Geobacter bemidjiensis Bem]
          Length = 662

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/664 (55%), Positives = 478/664 (71%), Gaps = 3/664 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ T + P GDQP AIA+L  G+   +  Q+LLGVTGSGKTFTMA+VI     P +
Sbjct: 1   MDKFELVTSFEPRGDQPRAIAELADGVLRGDPHQVLLGVTGSGKTFTMAQVIARCNCPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK  FP+NAVEYFVSYYDYYQPEAY+P +DT+IEK+SSIN++ID+
Sbjct: 61  VLAPNKTLAAQLYGEFKELFPNNAVEYFVSYYDYYQPEAYIPSSDTFIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            RHSATRSLL R D I+V+SVSCIYGIGS ESY +M ++ + GD V + E+L  LV  QY
Sbjct: 121 FRHSATRSLLTRRDVIIVASVSCIYGIGSPESYQEMQIRFREGDEVGRDEMLQRLVAIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RG+FRV GD++E+FP+H ++ A R+  FG+ ++ ISE  PL G +++ +   
Sbjct: 181 QRNDVDFHRGSFRVRGDTVEVFPAHDDERALRIEFFGDTVDAISEIDPLRGVQLQKLSRC 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SHYV  R TL  A++ I+ EL+ RL     +  LLEAQR+EQR  +D+EM+E  G
Sbjct: 241 AIYPASHYVASRQTLERAVEQIRLELEERLRYFNSQNMLLEAQRIEQRTFFDIEMMEEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+  GR  GEPP TL +Y P+D LL +DESH+T+ Q+ GMYRGD  RK TL
Sbjct: 301 FCQGIENYSRHFDGRAAGEPPYTLIDYFPKDFLLVIDESHITVSQVGGMYRGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL F+E+      TI VSATP  +EL+  +G++VEQ+IRPTGL+DP
Sbjct: 361 VNYGFRLPSALDNRPLTFQEFQKKLHQTIYVSATPADYELKLAEGVVVEQLIRPTGLIDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R A  QV+D+  E    A +G R+L+T LTKRMAE+LT+Y  E  IRVRY+HS++ 
Sbjct: 421 AIEVRPAAGQVDDLLHEARETAARGERVLVTTLTKRMAEELTDYYRELGIRVRYLHSDID 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T +R+EI+RDLRLG+FD+LVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQT GR
Sbjct: 481 TFQRMEILRDLRLGEFDLLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTCGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ +V++YAD +T S+Q AIDET RRR  Q  +N++H I P+SV+  I  V+    
Sbjct: 541 AARNVSGRVLMYADKVTGSMQAAIDETLRRRALQTAYNEEHGITPESVRRMIGNVLQAPE 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            +D  T   S +     LS K+ +  LK LRK+M  AA    FE AA +RD+IKRL+ + 
Sbjct: 601 EKDWVTVPASAE---EFLSVKELEKTLKRLRKEMLAAAKAQEFERAAELRDKIKRLEVAE 657

Query: 798 YFQG 801
             +G
Sbjct: 658 ITRG 661


>gi|43284|emb|CAA27314.1| uvrB [Escherichia coli]
          Length = 673

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/665 (55%), Positives = 476/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+ S++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLRSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      +   +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++
Sbjct: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|311280344|ref|YP_003942575.1| excinuclease ABC, B subunit [Enterobacter cloacae SCF1]
 gi|308749539|gb|ADO49291.1| excinuclease ABC, B subunit [Enterobacter cloacae SCF1]
          Length = 673

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/665 (55%), Positives = 478/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFTLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVINNLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ + +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHMTVGMIIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTG     ++   
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGHVESTIQRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILQAMEEIKEELVDRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GM+RGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMFRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +++Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI L A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVSTQVDDLLSEIRLRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQSQYNEEHGIVPQGLNKKVVDILALGEG 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      + T    +A + +L+ K  +  +  L  QM   A NL FEEAA+IRD++
Sbjct: 603 LAKTRGKGRGKSRTAAQTEAVEKALTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|312866187|ref|ZP_07726408.1| excinuclease ABC, B subunit [Streptococcus downei F0415]
 gi|311098591|gb|EFQ56814.1| excinuclease ABC, B subunit [Streptococcus downei F0415]
          Length = 663

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/655 (53%), Positives = 477/655 (72%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AI QL+  I   EK Q+LLG TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FHLVSKYQPAGDQPQAIEQLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEIFRDQLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  +  A+RV  FG++I+ I E   LTG  +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPASRDQHAFRVEFFGDEIDRIREIDALTGHNLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  I+ EL+ +L   E EG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFMTNDEHMEVAISRIQAELQQQLQLFESEGKLLEAQRLKQRTDYDIEMLREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R  +T LTK+MAEDLT+YL E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINDRVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVL+GINLLREG+D+PE  L+AILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T S+Q A+DET RRRE Q+ +N++H I PQ++K++I ++I   + + 
Sbjct: 549 NSQGHVIMYADTVTDSMQKAMDETARRREIQMAYNEEHGIVPQTIKKEIRDLI--AITKT 606

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +  + ++ +    ++SKK+ +  +K L+KQM  AA+ L+FE AA+IRD +  LK+
Sbjct: 607 SQDSQVAEEVDVSTMSKKERQETIKKLQKQMQEAAELLDFELAAQIRDMVLELKA 661


>gi|156934731|ref|YP_001438647.1| excinuclease ABC subunit B [Cronobacter sakazakii ATCC BAA-894]
 gi|156532985|gb|ABU77811.1| hypothetical protein ESA_02566 [Cronobacter sakazakii ATCC BAA-894]
          Length = 691

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/667 (55%), Positives = 475/667 (71%), Gaps = 12/667 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI ++ +G+      Q LLGVTGSGKTFTMA VI  +QRP +V
Sbjct: 21  KPFKLNSAFKPSGDQPEAIRRIKEGLEDGLAHQTLLGVTGSGKTFTMANVIADLQRPTMV 80

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 81  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 140

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 141 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLTELQYT 200

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTG     ++   
Sbjct: 201 RNDQAFQRGTFRVRGEVIDIFPAESDELALRVELFDEEVERLSLFDPLTGTVDSIIQRFT 260

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  AM+ IK EL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 261 VYPKTHYVTPRERIVQAMEEIKVELAERRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 320

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 321 CSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 380

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P T+ VSATPG++ELE+  G I++Q++RPTGL+DP 
Sbjct: 381 EYGFRLPSALDNRPLKFEEFEALAPQTVYVSATPGNYELEKSGGEIIDQVVRPTGLLDPI 440

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI        R+L+T LTKRMAEDLTEYL E   +VRY+HS++ T
Sbjct: 441 IEVRPVATQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDT 500

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 501 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 560

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++   L 
Sbjct: 561 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQAYNEEHGIVPQGLNKKVVDIL--ALG 618

Query: 739 EDAATTNISIDAQQLSL----------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           E+ A T      +  ++          + K  +  +  L  QM   A NL FEEAA++RD
Sbjct: 619 ENIAKTKPKGRGKGRTVADAEAAELALTPKALQQKIHQLEAQMVQHAQNLEFEEAAQLRD 678

Query: 789 EIKRLKS 795
           ++ +L+ 
Sbjct: 679 KLHQLRE 685


>gi|307545136|ref|YP_003897615.1| excinuclease ABC subunit B [Halomonas elongata DSM 2581]
 gi|307217160|emb|CBV42430.1| excinuclease ABC subunit B [Halomonas elongata DSM 2581]
          Length = 673

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/672 (55%), Positives = 481/672 (71%), Gaps = 10/672 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++++ + P+GDQP+AI  L+KG+ +    Q LLGVTGSGKTFTMA V+E +QRP IV
Sbjct: 3   KPFRLESKFKPAGDQPSAIEGLVKGLEAGLAHQTLLGVTGSGKTFTMANVVERLQRPTIV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++M
Sbjct: 63  MAPNKTLAAQLYGEFKSFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++V SVS IYG+G  + Y +M +    G+ ++Q+  L  L + QY 
Sbjct: 123 RLSATKALLERRDALIVVSVSAIYGLGDPDLYLKMRLHFNRGELIDQRAFLRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RGT+RV GD I+IFP+  ED A RV +F ++I++IS F PLTG+    V  + 
Sbjct: 183 RNDMDFKRGTYRVRGDVIDIFPADAEDEAVRVELFDDEIDQISLFDPLTGEVRGKVPRMT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR T+  A+  IKEEL  RL  + +  +L+EAQRLEQR  YD+EM+   G 
Sbjct: 243 IYPKTHYVTPRETIMGAIDSIKEELAERLAWMRQHDKLVEAQRLEQRSLYDIEMMLELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGEPPPT F+Y+P D+LLF+DESHV++PQ+ GMY+GD  RK TL 
Sbjct: 303 CNGIENYSRYLSGRAPGEPPPTFFDYLPADALLFIDESHVSVPQVGGMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP+ F+EW  + P  + VSATPG +E E   G +VEQ++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMTFQEWERICPQAVFVSATPGPYEAEHA-GQVVEQVVRPTGLLDPE 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R A TQV+D+  E+   +    R+L+T LTKRMAEDLTEYL E ++RVRY+HS++ T
Sbjct: 422 IEVRPASTQVDDLLSEVRARSAVDERVLVTTLTKRMAEDLTEYLDEHDVRVRYLHSDIDT 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 482 VERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNERSLIQTIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL- 737
           ARN + K +LY D +T S++ AIDET RRR KQ+ HN++H I P++V   + ++++    
Sbjct: 542 ARNAHGKAVLYGDRVTDSMRRAIDETERRRAKQIAHNEEHGITPETVSRSVADILESAET 601

Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                     +      +      SLS  + +  L  L   M  AA NL FEEAAR+RD 
Sbjct: 602 PGRKGKGRKSERKVAEGAAIYDPDSLSPAEIQKELTRLEDAMVEAAQNLEFEEAARLRDR 661

Query: 790 IKRLKSSPYFQG 801
           +  LK      G
Sbjct: 662 LHELKERQLAVG 673


>gi|167584790|ref|ZP_02377178.1| excinuclease ABC, B subunit [Burkholderia ubonensis Bu]
          Length = 696

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/671 (54%), Positives = 483/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AIA L++GI      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 21  EGSPFQLYQPYPPAGDQPTAIATLVEGIEDGLSFQTLLGVTGSGKTFTMANTIARLGRPA 80

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 81  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 140

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+++ L+  Q
Sbjct: 141 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQREVIARLIAMQ 200

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 201 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKIPR 260

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK+EL+ RL     + +L+EAQRLEQR  +DLEML+  
Sbjct: 261 FTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHADNKLVEAQRLEQRTRFDLEMLQEL 320

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 321 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 380

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ++RPTGLVD
Sbjct: 381 LVNYGFRLPSALDNRPLKFHEFERKMRQVVFVSATPADYE-KRVTGQIAEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A +QV+DV  EIN   +   R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 440 PEIEVRPASSQVDDVLTEINARVKAEERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYADT+T+S++ AI ET RRR KQ+ +N++  I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAYNEQMGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA  RD++  L
Sbjct: 620 YNADDARAELKEAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAATRDQLALL 679

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 680 RERVFGANVGD 690


>gi|325275797|ref|ZP_08141666.1| excinuclease ABC subunit B [Pseudomonas sp. TJI-51]
 gi|324099068|gb|EGB97045.1| excinuclease ABC subunit B [Pseudomonas sp. TJI-51]
          Length = 671

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/670 (55%), Positives = 486/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI Q+++GI +    Q LLGVTGSGKTF++A VI+ +QRP +
Sbjct: 1   MSEFQLVTRFQPAGDQPEAIRQMVEGIEAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   R TFRV GD I+IFP+  +  A RV +F +++E I+ F PLTG+  R +   
Sbjct: 181 TRNEMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVENIAAFDPLTGEVFRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A++ IK ELK RL  L K  +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLLDAVEGIKAELKDRLEYLHKANKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTL++Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG +E E   G +VEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWESVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VEIR A TQV+D+  EI      G R+L T LTKRMAEDL++YL + ++RVRY+HS++ 
Sbjct: 420 QVEIRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S+Q AIDET RRREKQ+  N+ + I P+ V + I ++++   
Sbjct: 540 AARNLNGRAILYADNITGSMQRAIDETERRREKQIAFNEANGIVPKGVIKDITDIMEGAT 599

Query: 738 LEDAATTNISIDAQQLSLSKK---------KGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  A +      A+    S +         +    +K L ++M   A +L FE AA++RD
Sbjct: 600 VPGARSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EITKLRERLI 669


>gi|188590418|ref|YP_001922476.1| excinuclease ABC subunit B [Clostridium botulinum E3 str. Alaska
           E43]
 gi|238689646|sp|B2UZZ0|UVRB_CLOBA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|188500699|gb|ACD53835.1| excinuclease ABC, B subunit [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 657

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/660 (54%), Positives = 476/660 (72%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + P+GDQP AI  +LK I    + Q LLGVTGSGKTFTMA +IE +QRP +
Sbjct: 1   MGNFKIHSKFKPTGDQPKAIETILKSIKKGNEFQTLLGVTGSGKTFTMANIIEKLQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID+
Sbjct: 61  ILAHNKTLAAQLCSEFKEFFPENIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G+ + Y ++ + L+ G   E+ E++  L++ QY
Sbjct: 121 LRHSATSALFERRDVIIVASVSCIYGLGNPDEYKKLTISLRKGMQKERDEIIKKLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD ++I PS       R+  FG++I+ I EF  LTG  +     +
Sbjct: 181 ERNDIDFSRGTFRVRGDLLDIIPSSTSSKGIRIEFFGDEIDRIREFDVLTGTILGERNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+ T + T+  ++  I+ EL+ RL EL  + +LLEAQRL QR  +D+EM+   G
Sbjct: 241 LIFPASHFATSKETVERSLGEIENELENRLRELNSQEKLLEAQRLRQRTNFDIEMIREMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L GR PG PP TL +Y PED LLF+DESHVT+PQ+  MY GD  RK TL
Sbjct: 301 YCSGIENYSRILDGRAPGTPPKTLIDYFPEDFLLFIDESHVTLPQVRAMYAGDRSRKNTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLP   DNRPL+FEE+       + VSATP  +ELE  Q  I EQ+IRPTGL+DP
Sbjct: 361 VDYGFRLPCAYDNRPLKFEEFEKKINQVMFVSATPAQYELEHSQS-IAEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + I+  + Q++D+Y EI     +G RIL+T LTKRMAEDLT+Y+ E  ++  YMHS++ 
Sbjct: 420 EIIIKPVKGQIDDLYTEIQETISRGYRILITTLTKRMAEDLTKYMIELGVKATYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++IIRDLRLG++DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMKIIRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+YAD ITKS++ AI ET RRR+ Q E+N++H I PQ++ +++ ++I+   
Sbjct: 540 AARNSESKVIMYADNITKSMKKAISETERRRKIQTEYNEEHGIIPQTINKEVRDLIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + + +T    I+A + SL+KK+ K  +K   ++M LAA NL FE AA++RDEI+ LK   
Sbjct: 600 VAEEST-EYGIEATK-SLTKKEVKKLIKEYTEEMMLAAKNLQFERAAQLRDEIEELKGKE 657


>gi|90021398|ref|YP_527225.1| excinuclease ABC subunit B [Saccharophagus degradans 2-40]
 gi|89950998|gb|ABD81013.1| Excinuclease ABC subunit B [Saccharophagus degradans 2-40]
          Length = 666

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 487/665 (73%), Gaps = 7/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++++ Y P+GDQP AI  L+KGI +    Q LLGVTGSGKTFT+A VIE + RP +V
Sbjct: 3   KLFKVKSKYTPAGDQPTAIEGLVKGIEAGLAHQTLLGVTGSGKTFTIANVIERIDRPTLV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVP +DT+I+K++S+N+ I++M
Sbjct: 63  MAHNKTLAAQLYGEFKDFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIDKDASVNDHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ER D IVV++VS IYG+G  ESY +MI+ L  GD+++Q+++L  L + QY 
Sbjct: 123 RLSATKALMERKDAIVVATVSAIYGLGDPESYLKMILHLNRGDTIDQRQILRRLAEMQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RGT+RV GD I+IFP+  E  A RV +F  +++ +S F PLTG+  R V    
Sbjct: 183 RNDIDFQRGTYRVRGDVIDIFPADSELEALRVELFDEEVDNLSIFDPLTGEVFRKVPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYVTPR  +  A+  IKEEL  RL +L +  +L+EAQRLEQR  YDLEM++  G 
Sbjct: 243 VYPKSHYVTPRNKIIDAIDEIKEELAERLQQLRENDKLVEAQRLEQRTRYDLEMMQELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR+ GEPPPTLF+Y+P ++LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 303 CNGIENYSRYLSGRDSGEPPPTLFDYLPAEALLVIDESHVTVPQIGAMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP+RF+EW    P  I VSATPG +E E  QG +VEQ++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMRFDEWEARAPQMIFVSATPGKYEAEH-QGQVVEQVVRPTGLLDPI 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R A +QV+D   EI        R+L+TVLTKRMAEDLT+YL E  +RVRY+HS++ T
Sbjct: 422 IEVRPATSQVDDAMSEITKRVALEERVLITVLTKRMAEDLTDYLQEHGVRVRYLHSDIDT 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLR+G+FDVLVGINLLREGLD+PE  LVAI DADKEGFLRS  SLIQTIGRA
Sbjct: 482 VERVEIIRDLRIGEFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSDRSLIQTIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN K ILYA+ IT S++ AIDET RRR+KQ++HN+KH I P  + + I ++++    
Sbjct: 542 ARNVNGKAILYAERITDSMRRAIDETERRRQKQIDHNEKHGITPIGITKSIADIMEGARA 601

Query: 739 EDAATT------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             + ++      + + D +    S K     ++ + K M  AA +L FE+AA++RD+I  
Sbjct: 602 PGSKSSSRKRVADKTKDYEVDMNSSKDIWKTIQVMEKDMFQAAKDLEFEKAAQLRDKINS 661

Query: 793 LKSSP 797
           LK+  
Sbjct: 662 LKAKI 666


>gi|37679377|ref|NP_933986.1| excinuclease ABC subunit B [Vibrio vulnificus YJ016]
 gi|37198120|dbj|BAC93957.1| excinuclease ABC subunit B [Vibrio vulnificus YJ016]
          Length = 680

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/676 (54%), Positives = 488/676 (72%), Gaps = 11/676 (1%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             K    + + +DY PSGDQP AI QL +G+ +    Q LLGVTGSGKTFT+A VI   Q
Sbjct: 2   RGKMSKLYDLVSDYAPSGDQPTAIKQLTEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQ 61

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPAI++APNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N 
Sbjct: 62  RPAILLAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSVNA 121

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
            I++MR SAT++LLER D I+V+SVS IYG+G  E+Y QM++ ++ GD ++Q+++L  L 
Sbjct: 122 HIEQMRLSATKALLERKDAIIVASVSAIYGLGDPEAYLQMMLHIRRGDVMDQRDILRRLA 181

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-R 372
           + QY R DI   RG FRV G+ I++FP+  +  A R+ MF ++I+ IS F PLTG    R
Sbjct: 182 ELQYSRNDIAFERGQFRVRGEVIDVFPAESDQDAVRIEMFDDEIDCISVFDPLTGVVKQR 241

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           ++    IY  +HYVTPR  +  A++ IK+EL+ R   L    +LLE QR+ QR  +D+EM
Sbjct: 242 DLPRFTIYPKTHYVTPRERILQAIENIKQELRERQTYLRDNNKLLEEQRISQRTQFDIEM 301

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           +   G C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  
Sbjct: 302 MNELGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRS 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G I +Q++RPT
Sbjct: 362 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSAGEIADQVVRPT 421

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP +E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E +++VRY+
Sbjct: 422 GLLDPVLEVRPVATQVDDLLSEIRIRAVKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYL 481

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLI
Sbjct: 482 HSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 541

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN++ K ILYAD+ITKS++ A+DET RRREKQ  +N+K  I PQ++K  I ++
Sbjct: 542 QTIGRAARNLHGKAILYADSITKSMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDI 601

Query: 733 IDPILLEDAATTNISIDAQQLS----------LSKKKGKAHLKSLRKQMHLAADNLNFEE 782
           ++   +  +    +S                 L+ ++ +  +  L  QM+  A +L FE 
Sbjct: 602 MELGDITKSRKQKVSKTVPLSKVAEPSLSYNVLTPQQLEKEITKLEAQMYKHAQDLEFEL 661

Query: 783 AARIRDEIKRLKSSPY 798
           AA+ RDEI++L+    
Sbjct: 662 AAQKRDEIEKLRQQFI 677


>gi|325690568|gb|EGD32571.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK115]
          Length = 662

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLGIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADTIT+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTITQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMVKKLEGQMQEAAGLLDFELAAQIRDMILEIKT 660


>gi|114765085|ref|ZP_01444230.1| excinuclease ABC subunit B [Pelagibaca bermudensis HTCC2601]
 gi|114542489|gb|EAU45515.1| excinuclease ABC subunit B [Roseovarius sp. HTCC2601]
          Length = 732

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/671 (63%), Positives = 521/671 (77%), Gaps = 1/671 (0%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFT 184
           P          +    F M T+++ +GDQP AIA+L  GI   E+ Q+LLG TG+GKTFT
Sbjct: 16  PAPDVREREKLEGGKRFVMHTEFNAAGDQPTAIAELSSGIDEGERNQVLLGATGTGKTFT 75

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           MAKVIE  QRPAI++APNK LAAQLY EFK FFP N+VEYFVSYYDYYQPEAYV R+DTY
Sbjct: 76  MAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNSVEYFVSYYDYYQPEAYVARSDTY 135

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304
           IEKES INEQIDRMRHSATRSLLER+D I+V+SVSCIYGIGSVE+Y  M   L  G   E
Sbjct: 136 IEKESQINEQIDRMRHSATRSLLERDDVIIVASVSCIYGIGSVETYGAMTQDLHAGSEYE 195

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
            +++++ LV QQY+R D    RG+FRV GDS+EI+P+HLED AWR+S FG ++E I+EF 
Sbjct: 196 MRKVMADLVTQQYRRNDQAFQRGSFRVRGDSLEIWPAHLEDRAWRLSFFGEELEAITEFD 255

Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
           PLTGQK  + E I++YANSHYVTP+PT+N A+  IK+EL+ RL +L  EG+LLEAQRLEQ
Sbjct: 256 PLTGQKTGSFERIRVYANSHYVTPKPTMNQAVIQIKKELRQRLDQLVSEGKLLEAQRLEQ 315

Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484
           R  +D+EMLE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI 
Sbjct: 316 RTNFDIEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIG 375

Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544
           GMYRGD+ RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP +I VSATP +WELE+  G+ 
Sbjct: 376 GMYRGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSIFVSATPAAWELEESGGVF 435

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
            EQ+IRPTGL+DP VEIR    QV+D+ DEI    Q G R L TVLTKRMAEDLTEYL+E
Sbjct: 436 TEQVIRPTGLLDPQVEIRPVEMQVDDLLDEIRKVTQDGYRTLCTVLTKRMAEDLTEYLHE 495

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           + I+VRYMHS++ T+ERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGF
Sbjct: 496 QGIKVRYMHSDIDTIERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGF 555

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
           LRS+TSLIQTIGRAARN   +VI+YAD IT S++ A+ ET RRR+KQ+ +N++H I P++
Sbjct: 556 LRSETSLIQTIGRAARNAEGRVIMYADRITGSMERALAETDRRRQKQIAYNEEHGITPET 615

Query: 725 VKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           VK+ + +++  +   D     ++             +  L  LR  M  AA+NL FEEAA
Sbjct: 616 VKKNVDDILAGLYQGDVDMNRVTATVDP-KRQGANLETVLNGLRTDMRKAAENLEFEEAA 674

Query: 785 RIRDEIKRLKS 795
           R+RDEIKRL++
Sbjct: 675 RLRDEIKRLEA 685


>gi|27366360|ref|NP_761888.1| excinuclease ABC subunit B [Vibrio vulnificus CMCP6]
 gi|32130295|sp|Q8D891|UVRB_VIBVU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56749771|sp|Q7MM80|UVRB_VIBVY RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|27362561|gb|AAO11415.1| excinuclease ABC, B subunit [Vibrio vulnificus CMCP6]
          Length = 676

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/671 (55%), Positives = 487/671 (72%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             + + +DY PSGDQP AI QL +G+ +    Q LLGVTGSGKTFT+A VI   QRPAI+
Sbjct: 3   KLYDLVSDYAPSGDQPTAIKQLTEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  E+Y QM++ ++ GD ++Q+++L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPEAYLQMMLHIRRGDVMDQRDILRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R DI   RG FRV G+ I++FP+  +  A R+ MF ++I+ IS F PLTG    R++   
Sbjct: 183 RNDIAFERGQFRVRGEVIDVFPAESDQDAVRIEMFDDEIDCISVFDPLTGVVKQRDLPRF 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK+EL+ R   L    +LLE QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPRERILQAIENIKQELRERQTYLRDNNKLLEEQRISQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G I +Q++RPTGL+DP
Sbjct: 363 VEYGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ 
Sbjct: 423 VLEVRPVATQVDDLLSEIRIRAVKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN++ K ILYAD+ITKS++ A+DET RRREKQ  +N+K  I PQ++K  I ++++   
Sbjct: 543 AARNLHGKAILYADSITKSMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDIMELGD 602

Query: 738 LEDAATTNISIDAQQLS----------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           +  +    +S                 L+ ++ +  +  L  QM+  A +L FE AA+ R
Sbjct: 603 ITKSRKQKVSKTVPLSKVAEPSLSYNVLTPQQLEKEITKLEAQMYKHAQDLEFELAAQKR 662

Query: 788 DEIKRLKSSPY 798
           DEI++L+    
Sbjct: 663 DEIEKLRQQFI 673


>gi|327470841|gb|EGF16297.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK330]
          Length = 662

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSRYDPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI   A++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEITARAEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  AA  L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAAGLLDFELAAQIRDMILEIKA 660


>gi|167032515|ref|YP_001667746.1| excinuclease ABC subunit B [Pseudomonas putida GB-1]
 gi|166859003|gb|ABY97410.1| excinuclease ABC, B subunit [Pseudomonas putida GB-1]
          Length = 671

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/670 (55%), Positives = 487/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI+ +QRP +
Sbjct: 1   MSEFQLVTRFQPAGDQPEAIRQLVEGIEAGLSHQTLLGVTGSGKTFSIANVIQHVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   R TFRV GD I+IFP+  +  A R+ +F +++E I+ F PLTG+  R +   
Sbjct: 181 TRNEMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVFRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A++ IKEELK RL  L K  +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLLEAVEGIKEELKERLEYLHKANKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTL++Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFR+PS +DNRP+RF+EW  + P TI VSATPG +E E   G +VEQ++RPTGLVDP
Sbjct: 361 VEYGFRMPSALDNRPMRFDEWEDVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VEIR A TQV+D+  EI      G R+L T LTKRMAEDL++YL + ++RVRY+HS++ 
Sbjct: 420 QVEIRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD +T S+Q AIDET RRREKQ+  N+ + I P+ V + I ++++   
Sbjct: 540 AARNLNGRAILYADNVTGSMQRAIDETERRREKQIAFNEANGIVPKGVVKDITDILEGAT 599

Query: 738 LEDAATTNISIDAQQLSLSKK---------KGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  A +      A+    S +         +    +K L ++M   A +L FE AA++RD
Sbjct: 600 VPGARSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EISQLRERLI 669


>gi|307709471|ref|ZP_07645928.1| excinuclease ABC, B subunit [Streptococcus mitis SK564]
 gi|307619785|gb|EFN98904.1| excinuclease ABC, B subunit [Streptococcus mitis SK564]
          Length = 662

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/655 (53%), Positives = 473/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+V     +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVINDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +++
Sbjct: 606 AVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVRA 660


>gi|21910532|ref|NP_664800.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS315]
 gi|28895774|ref|NP_802124.1| excinuclease ABC subunit B [Streptococcus pyogenes SSI-1]
 gi|94988747|ref|YP_596848.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS9429]
 gi|94992572|ref|YP_600671.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS2096]
 gi|25453316|sp|Q8K743|UVRB_STRP3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189038000|sp|Q1JBD1|UVRB_STRPB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189038001|sp|Q1JLB5|UVRB_STRPC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|21904732|gb|AAM79603.1| putative excinuclease ABC (subunit B) [Streptococcus pyogenes
           MGAS315]
 gi|28811023|dbj|BAC63957.1| putative excinuclease ABC subunit B [Streptococcus pyogenes SSI-1]
 gi|94542255|gb|ABF32304.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS9429]
 gi|94546080|gb|ABF36127.1| Excinuclease ABC subunit B [Streptococcus pyogenes MGAS2096]
          Length = 663

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/659 (53%), Positives = 470/659 (71%), Gaps = 3/659 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +D   F++++ Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P
Sbjct: 5   RDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + +  LL+ LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTG+ I  V+
Sbjct: 185 QFERNDIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML  
Sbjct: 245 HLVLFPATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTSGVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+ Q    I+EQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGEYEMSQT-NTIIEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +++R +  Q++D+  EIN    +  R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEIDVRPSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+  VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I  +I  
Sbjct: 544 GRAARNVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   +   +D    S+S+ + K  + +L+KQM  AA+ L+FE AA++RD I  LK
Sbjct: 604 SKTSHNDISKEEMD--YESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660


>gi|254428046|ref|ZP_05041753.1| excinuclease ABC, B subunit [Alcanivorax sp. DG881]
 gi|196194215|gb|EDX89174.1| excinuclease ABC, B subunit [Alcanivorax sp. DG881]
          Length = 671

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/669 (56%), Positives = 480/669 (71%), Gaps = 8/669 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++ +DY P+GDQP AIAQL++GI      Q LLGVTGSGKTFTMA VIE   RP I+
Sbjct: 4   SLFKLHSDYQPAGDQPKAIAQLIEGIDDGLGHQTLLGVTGSGKTFTMANVIEQTGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY EF+ FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NEQI++M
Sbjct: 64  MAPNKTLAAQLYGEFREFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEQIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D I+V++VS IYG+G   SY  M++ L  GD ++Q+ELL  L + QY 
Sbjct: 124 RLSATKAILERPDTIIVATVSAIYGLGDPASYHAMVLHLVRGDHIDQRELLRRLAELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R ++   R T+RV GD I+IFP+  E  A R+ +F +++E IS F PLTG+ IR +    
Sbjct: 184 RNEMDFRRATYRVRGDVIDIFPAEEEKEAVRIELFDDEVESISIFDPLTGEVIRRIGRTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYVTPR T+  A++ IKEEL  RL EL+++ +L+EAQRLEQR  +D+EML+  G 
Sbjct: 244 IYPKSHYVTPRETVLKAVEMIKEELTERLAELKEQNKLVEAQRLEQRTRFDIEMLQELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  +ENYSR  +GR PG+ PPTLF+Y+P+++LL  DESHVTIPQ+  MY+GD  RK TL 
Sbjct: 304 CNGVENYSRLFSGRAPGDAPPTLFDYLPDNALLIADESHVTIPQLGAMYKGDRSRKETLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            +GFRLPS MDNRPL+FEEW  L P  + VSATPG +E ++  G +VEQ++RPTGLVDP 
Sbjct: 364 SFGFRLPSAMDNRPLKFEEWEQLAPQMVFVSATPGPYE-QKYAGQVVEQVVRPTGLVDPK 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR A TQV+D+  E      +  R+L+T LTKRMAEDLTEYL E  IRVRY+HS++ T
Sbjct: 423 IEIRPATTQVDDLLGEAKECIAKEQRVLVTTLTKRMAEDLTEYLNEHGIRVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSDRSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-- 736
           ARNV  + ILYAD +T S++ AI ET RRREKQ   NK + I PQ + +KI +++D    
Sbjct: 543 ARNVEGRAILYADKMTGSMERAIGETDRRREKQEAFNKANGITPQGLNKKIRDIMDDSGG 602

Query: 737 -----LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                  +       S      + S  +    +K L  +M   A NL FE+AA  RD+I 
Sbjct: 603 SRFDRKYKGEKKVAESAADYLDARSPAQVAKEIKVLEAKMLEHAKNLEFEDAAATRDKIH 662

Query: 792 RLKSSPYFQ 800
           +L+   + +
Sbjct: 663 QLRELGFMR 671


>gi|293397183|ref|ZP_06641457.1| excision endonuclease subunit UvrB [Serratia odorifera DSM 4582]
 gi|291420654|gb|EFE93909.1| excision endonuclease subunit UvrB [Serratia odorifera DSM 4582]
          Length = 670

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/665 (55%), Positives = 468/665 (70%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +D+ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V
Sbjct: 3   KLFKLHSDFKPAGDQPEAIRKLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    R TFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTGQ  + V+   
Sbjct: 183 RNDQAFQRATFRVRGEVIDIFPAESDELALRVELFDEEVERLSLFDPLTGQVEQVVQRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYVTPR  +  AM+ IK +L  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKSHYVTPRERILQAMEEIKVDLAERRQVLLANNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+  G +++Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDVIDQVVRPTGLLDPQ 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R   TQV+D+  EI        R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 VEVRPVTTQVDDLLSEIRKRVAVNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN+N K ILY D IT S+  AI ET RRR KQ  +N+++ I PQ + +KI +++     
Sbjct: 543 ARNLNGKAILYGDRITDSMARAIGETERRRAKQQAYNQENGIVPQGLNKKIADILQLGQP 602

Query: 735 -PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                    +       Q   L+ K     ++ L  QM+  A NL FE+AA +RDEI +L
Sbjct: 603 SSRGKGKGKSKAAENATQYQQLTPKALDQKIRELEAQMYTHAQNLEFEQAAALRDEIHQL 662

Query: 794 KSSPY 798
           +    
Sbjct: 663 REQFI 667


>gi|322417671|ref|YP_004196894.1| excinuclease ABC subunit B [Geobacter sp. M18]
 gi|320124058|gb|ADW11618.1| excinuclease ABC, B subunit [Geobacter sp. M18]
          Length = 662

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/664 (54%), Positives = 483/664 (72%), Gaps = 3/664 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ T++   GDQP AI +L +G+   ++ Q+LLGVTGSGKTFTMA+VI    RP +
Sbjct: 1   MDKFELVTEFQARGDQPRAIDELSEGVLRGDRHQVLLGVTGSGKTFTMAQVIARCNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK  FP+NAVEYFVSYYDYYQPEAY+P +DT+IEK+SSIN++ID+
Sbjct: 61  VLAPNKTLAAQLYGEFKELFPNNAVEYFVSYYDYYQPEAYIPASDTFIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            RH+ATRSLL R D ++V+SVSCIYGIGS ESY +M ++++ GD + + ELL  LV+ QY
Sbjct: 121 FRHAATRSLLTRRDVVIVASVSCIYGIGSPESYQEMQIRVREGDELGRDELLKRLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RG+FRV GD++E+FP+H ++ A R+  +G+ +E IS+  PL G  I+ +   
Sbjct: 181 ARNDVDFHRGSFRVRGDTVEVFPAHDDERAIRIEFWGDTVEAISQIDPLRGVLIQRLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SHYV  R TL  A++ I+ EL+ RL   + +  LLEAQR+EQR  +D+EMLE  G
Sbjct: 241 AIYPASHYVASRQTLERAVEQIRVELEERLRYFKSQNMLLEAQRIEQRTFFDIEMLEQMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+  GR  GEPP TL +Y P+D +L VDESH+T+ Q+ GMYRGD  RK TL
Sbjct: 301 FCQGIENYSRHFDGRQAGEPPYTLIDYFPDDFMLVVDESHITVSQVGGMYRGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL F+E+      T+ VSATP  +EL+   G++VEQ+IRPTGL+DP
Sbjct: 361 VNYGFRLPSALDNRPLTFQEFQKKLNQTVYVSATPADYELKMSSGVVVEQLIRPTGLIDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R A  QV+D+  E  L  ++G R+L+T LTKRMAE+LT+Y  E  IRVRY+HS++ 
Sbjct: 421 AIEVRPAAGQVDDLLHEARLTVERGERVLVTTLTKRMAEELTDYYRELGIRVRYLHSDID 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T +R+EI+RDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQT GR
Sbjct: 481 TFQRMEILRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTCGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN++ +V++YAD +T S+Q AIDET RRRE Q  +N+++ I P+SVK  I  V+    
Sbjct: 541 AARNISGRVLMYADKVTGSMQAAIDETLRRRELQEAYNRENGITPESVKRLIGNVLQSPE 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            +D  T  +  +     L+ K+ +  +K L+K+M  AA    FE+AA +RD+I+RL+ + 
Sbjct: 601 EKDWVTVPVRAE---EFLNPKELEKTVKRLKKEMLAAAKAQEFEKAAELRDKIRRLEVAE 657

Query: 798 YFQG 801
             +G
Sbjct: 658 ITKG 661


>gi|71903721|ref|YP_280524.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS6180]
 gi|90111056|sp|Q48SZ1|UVRB_STRPM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|71802816|gb|AAX72169.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS6180]
          Length = 663

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/659 (53%), Positives = 470/659 (71%), Gaps = 3/659 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +D   F++++ Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P
Sbjct: 5   RDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + +  LL+ LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTG+ I  V+
Sbjct: 185 QFERNDIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML  
Sbjct: 245 HLVLFPATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTSGVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       I VSATPG +E+ Q    I+EQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIIYVSATPGEYEMSQT-NTIIEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +++R +  Q++D+  EIN    +  R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEIDVRPSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+  VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I  +I  
Sbjct: 544 GRAARNVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   +   +D    S+S+ + K  + +L+KQM  AA+ L+FE AA++RD I  LK
Sbjct: 604 SKTSHNDISKEEMD--YESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660


>gi|306829598|ref|ZP_07462788.1| excision endonuclease subunit UvrB [Streptococcus mitis ATCC 6249]
 gi|304428684|gb|EFM31774.1| excision endonuclease subunit UvrB [Streptococcus mitis ATCC 6249]
          Length = 662

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   E+EG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEREGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|251790133|ref|YP_003004854.1| excinuclease ABC subunit B [Dickeya zeae Ech1591]
 gi|247538754|gb|ACT07375.1| excinuclease ABC, B subunit [Dickeya zeae Ech1591]
          Length = 670

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/663 (56%), Positives = 472/663 (71%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHSAFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ED+A RV +F  ++E +S F PLTG  ++ V    IY
Sbjct: 185 DQAFGRGTFRVRGEIIDIFPAESEDIALRVELFDEEVERLSLFDPLTGHIVQVVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR T+DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRLAQRTTFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVTIPQ+ GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+  G I++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEIIDQVVRPTGLLDPQLE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   +    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVTTQVDDLLSEIRKRSAISERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           N+N K ILY D IT S++ AI+ET RRREKQ  +N++H I PQ + +KI +++       
Sbjct: 545 NLNGKAILYGDKITPSMERAINETQRRREKQQAYNEQHGIVPQGLNKKIGDILQIGQPTH 604

Query: 738 --LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              +          AQ   LS K     ++ L  QM   A NL FEEAA +RDEI  L+ 
Sbjct: 605 GRGKGRGKKAAEPAAQYQQLSPKALDQKIRELESQMLAHAQNLEFEEAAHLRDEIHALRE 664

Query: 796 SPY 798
              
Sbjct: 665 QFI 667


>gi|325132472|gb|EGC55165.1| excinuclease ABC, B subunit [Neisseria meningitidis M6190]
          Length = 716

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/665 (53%), Positives = 479/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 50  SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 109

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 110 MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 169

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 170 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 229

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    
Sbjct: 230 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYT 289

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G 
Sbjct: 290 VFPSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGF 349

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ + +  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 350 CKGIENYSRHFSSKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 409

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 410 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 468

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 469 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 528

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 529 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 588

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 589 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 648

Query: 739 EDAATTNISIDAQQLSLS----KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+           ++ +S    ++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 649 EEDGGKGRRQGKNKVKVSEIHNEEDAVKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIK 708

Query: 795 SSPYF 799
               F
Sbjct: 709 EGLLF 713


>gi|94990640|ref|YP_598740.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS10270]
 gi|189038002|sp|Q1JGE8|UVRB_STRPD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|94544148|gb|ABF34196.1| Excinuclease ABC subunit B [Streptococcus pyogenes MGAS10270]
          Length = 663

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/659 (53%), Positives = 470/659 (71%), Gaps = 3/659 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +D   F++++ Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P
Sbjct: 5   RDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + +  LL+ LV  
Sbjct: 125 DKLRHSATASLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTG+ I  V+
Sbjct: 185 QFERNDIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML  
Sbjct: 245 HLVLFPATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTSGVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+ Q    I+EQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGEYEMSQT-NTIIEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +++R +  Q++D+  EIN    +  R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEIDVRPSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+  VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I  +I  
Sbjct: 544 GRAARNVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   +   +D    S+S+ + K  + +L+KQM  AA+ L+FE AA++RD I  LK
Sbjct: 604 SKTSHNDISKEEMD--YESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660


>gi|170696608|ref|ZP_02887728.1| excinuclease ABC, B subunit [Burkholderia graminis C4D1M]
 gi|170138474|gb|EDT06682.1| excinuclease ABC, B subunit [Burkholderia graminis C4D1M]
          Length = 697

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/671 (54%), Positives = 483/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI  L++GI      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 22  EGSPFQLYQPYPPAGDQPTAIETLVEGIEDGLSFQTLLGVTGSGKTFTMANTIARLGRPA 81

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQP+AYVP+ D +IEK+SSINE I+
Sbjct: 82  IVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPKAYVPQRDLFIEKDSSINEHIE 141

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 142 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQRDIIARLIAMQ 201

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RG+FRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 202 YNRNEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKIPR 261

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK EL+ RL     +G+L+EAQRLEQR  +DLEML+  
Sbjct: 262 FTVYPSSHYVTPRDTVVRAVETIKAELRERLEFFYSQGKLVEAQRLEQRTRFDLEMLQEL 321

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+++ +DESHV I Q++GMY GD  RK  
Sbjct: 322 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDAIMLLDESHVLIGQLNGMYNGDRARKEN 381

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G + EQ++RPTGLVD
Sbjct: 382 LVDYGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-KKTAGQVAEQLVRPTGLVD 440

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R AR+QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 441 PEIEVRPARSQVDDVLAEINERVKAGDRVLVTVLTKRMAEQLTEFLADHGVKVRYLHSDI 500

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 501 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 560

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYAD +T S++ AIDET RRR KQ+  N +  I P+ V ++I ++ID +
Sbjct: 561 RAARNVNGKAILYADKVTDSMRRAIDETERRRAKQIAFNLERGITPRGVVKRIRDIIDGV 620

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    LK L KQM   A NL FE+AA+ RD++  L
Sbjct: 621 YNVDDARAELKEQQTRAKFEDMSEKQLAKELKRLEKQMMEHAKNLEFEKAAQTRDQLALL 680

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 681 RQRVFGANVGD 691


>gi|146307759|ref|YP_001188224.1| excinuclease ABC subunit B [Pseudomonas mendocina ymp]
 gi|145575960|gb|ABP85492.1| Excinuclease ABC subunit B [Pseudomonas mendocina ymp]
          Length = 671

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/670 (54%), Positives = 486/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +
Sbjct: 1   MSEFQLVTRFKPAGDQPEAIRQMIEGLEAGLSHQTLLGVTGSGKTFSVANVIAQVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++L+ER D IVV +VS IYG+GS E Y +M++ L  GD ++Q+ LL  L + QY
Sbjct: 121 MRLSATKALIERKDVIVVCTVSSIYGLGSPEEYLKMVLHLDRGDKMDQRALLRRLAELQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+IFP+  +  A RV +F +++E IS F PLTG+ I+ +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESISAFDPLTGEVIQKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A++ IK EL+ RL  L    +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLLEAVEQIKVELQQRLEYLRGANKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTL++Y+P+D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPAGAPPPTLYDYLPDDALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RFEEW    P TI VSATPG +E E   G ++EQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFEEWEAASPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R ARTQV+D+  EI L    G R+L+T LTKRMAEDLT+YL + +++VRY+HS++ 
Sbjct: 420 AVEVRPARTQVDDLLSEIRLRVAAGDRVLVTTLTKRMAEDLTDYLGDHDVKVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD +T S+Q AI ET RRR KQ+  N+ + I P+ V++ + ++++  +
Sbjct: 540 AARNLNGRAILYADNMTGSMQRAIGETERRRAKQIAFNEANGIVPKGVQKDVKDILEGAV 599

Query: 738 LED---------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +           A     S   +    S  +    ++ L ++M+  A +L FE AA++RD
Sbjct: 600 VPGARSNKRKGMAKAAEESARYESELRSPSEITKRIRQLEEKMYALARDLEFEAAAQLRD 659

Query: 789 EIKRLKSSPY 798
           EI++L+    
Sbjct: 660 EIQKLRDRLL 669


>gi|91793153|ref|YP_562804.1| excinuclease ABC subunit B [Shewanella denitrificans OS217]
 gi|91715155|gb|ABE55081.1| Excinuclease ABC subunit B [Shewanella denitrificans OS217]
          Length = 676

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/671 (53%), Positives = 477/671 (71%), Gaps = 12/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F +   + P+GDQP AI +L++G+ +    Q LLGVTGSGKT+T+A VI+ M RP I+
Sbjct: 4   AKFDLHFPFPPAGDQPTAIRKLVEGLEAGLACQTLLGVTGSGKTYTIANVIKTMGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QYK
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDPMGQRDILHRLSELQYK 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGT+RV G+ I+IFP+  E  A RV +F ++IE +SEF PLTGQ  + +    
Sbjct: 184 RNDIELSRGTYRVRGEVIDIFPADSERDAIRVELFDDEIERLSEFDPLTGQIKKRLARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A ++IKEEL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKTHYVTPREKIIAATEFIKEELRERRQHLLDNNKLIEAQRITERVQYDVEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PG  PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRTPGSAPPTLLDYLPSDGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P T+ VSATP  +E ++  G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTVFVSATPSQYEFDKSAGEIAEQVVRPTGLLDPV 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR    QV+D+  EI        R+L+T LTK+M+EDLT+YL E  ++VRY+HS++ T
Sbjct: 424 LEIRPVAIQVDDLLSEIAKRVAVNERVLVTTLTKKMSEDLTDYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N KVILYAD +TKS+  AI+ET RRREKQ +HN  + I P+ V + I +V+D +  
Sbjct: 544 ARNINGKVILYADRVTKSMAKAIEETDRRREKQHQHNLANGITPKGVVKSITDVMD-VGD 602

Query: 739 EDAATTNISIDAQQLSLSKK-----------KGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           E++ T           ++ K           +    ++ L KQM   A +L FE+AA +R
Sbjct: 603 ENSTTGYRKTAPMPGKVASKPGQYDDLNSISELSRAIEKLEKQMLQHARDLEFEQAAALR 662

Query: 788 DEIKRLKSSPY 798
           DE+  L+    
Sbjct: 663 DEVHALRERII 673


>gi|157146587|ref|YP_001453906.1| excinuclease ABC subunit B [Citrobacter koseri ATCC BAA-895]
 gi|189037956|sp|A8AJ07|UVRB_CITK8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|157083792|gb|ABV13470.1| hypothetical protein CKO_02348 [Citrobacter koseri ATCC BAA-895]
          Length = 673

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/665 (55%), Positives = 478/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    ++   
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTIQRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK+EL  R   +++  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKDELVDRRRIMQENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GM+RGD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMFRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGEVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI L A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRLRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----- 733
           ARNVN K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQLYNEEHGIVPQGLNKKVVDILALGQN 602

Query: 734 ---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                   +  +         ++ ++ K  +  +  L  QM   A NL FEEAA IRD++
Sbjct: 603 IAKTKAKGKGKSRAAAKSGVVEMDMTPKALQQKIHELEGQMMQHAQNLEFEEAAEIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|121635041|ref|YP_975286.1| excinuclease ABC subunit B [Neisseria meningitidis FAM18]
 gi|120866747|emb|CAM10500.1| excinuclease ABC subunit B [Neisseria meningitidis FAM18]
 gi|325142556|gb|EGC64956.1| excinuclease ABC, B subunit [Neisseria meningitidis 961-5945]
 gi|325198479|gb|ADY93935.1| excinuclease ABC, B subunit [Neisseria meningitidis G2136]
          Length = 675

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/665 (54%), Positives = 480/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSLS----KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+           ++ +S    ++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDGGKGRRQGKNKVKVSEIHNEEDAVKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIK 667

Query: 795 SSPYF 799
               F
Sbjct: 668 EGLLF 672


>gi|171320673|ref|ZP_02909689.1| excinuclease ABC, B subunit [Burkholderia ambifaria MEX-5]
 gi|171094076|gb|EDT39169.1| excinuclease ABC, B subunit [Burkholderia ambifaria MEX-5]
          Length = 696

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/671 (54%), Positives = 484/671 (72%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 21  EGSPFQLYQPYPPAGDQPTAIETLVEGVGDGLAFQTLLGVTGSGKTFTMANTIARLGRPA 80

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 81  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 140

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y +MI+ L+ GD + Q+++++ L+  Q
Sbjct: 141 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHKMILTLRTGDKLGQRDVIARLIAMQ 200

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 201 YSRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKIPR 260

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +DLEML+  
Sbjct: 261 FTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRFDLEMLQEL 320

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 321 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 380

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ++RPTGLVD
Sbjct: 381 LVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A +QV+DV  EIN     G R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 440 PEIEVRPASSQVDDVLTEINARVNAGERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYADT+T+S++ AI ET RRR KQ+ HN+K  I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAHNEKMGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA  RD++  L
Sbjct: 620 YNADDARAELKEAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAATRDQLALL 679

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 680 RERVFGANVGD 690


>gi|283833926|ref|ZP_06353667.1| excinuclease ABC subunit B [Citrobacter youngae ATCC 29220]
 gi|291070598|gb|EFE08707.1| excinuclease ABC subunit B [Citrobacter youngae ATCC 29220]
          Length = 673

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/665 (56%), Positives = 473/665 (71%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTISRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKVELAERRKILLANNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPV 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRTRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----- 733
           ARN+N K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++     
Sbjct: 543 ARNINGKAILYGDKITASMARAIGETERRREKQQRYNEEHGITPQGLNKKVVDILALGQS 602

Query: 734 ---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                   +  +      D  +L ++ K  +  +  L  QM   A NL FEEAA IRD++
Sbjct: 603 IAKTKAKGKGKSRAGAKSDVVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAATIRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRE 667


>gi|315126990|ref|YP_004068993.1| excinuclease ABC subunit B [Pseudoalteromonas sp. SM9913]
 gi|315015504|gb|ADT68842.1| excinuclease ABC subunit B [Pseudoalteromonas sp. SM9913]
          Length = 664

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/659 (54%), Positives = 478/659 (72%), Gaps = 1/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++ + P+GDQP AIAQL +G+ +    Q LLG TG+GKTFTMA +I  + RP I+MA
Sbjct: 5   FQLESKFKPAGDQPTAIAQLCEGLEAGLAHQTLLGATGTGKTFTMANIISDLNRPTIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYV  +DT+IEK++SINE I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVVASDTFIEKDASINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  +SY +M++ LK+G+ V+Q+++L  L + QY R 
Sbjct: 125 SATKALLERRDTIIVASVSAIYGLGDPDSYMKMMLLLKVGEKVDQRDMLRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGT+RV G+ ++IFP+  +  A RV MF +++E +S F PLTG   +++    IY
Sbjct: 185 DIDFSRGTYRVRGEVVDIFPAESDTYAVRVEMFDDEVERLSIFDPLTGAVEKHIVRATIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK ELK R  +L    +L+E QR+ QR  YD+EM+   G C 
Sbjct: 245 PKTHYVTPREKILEAIEKIKVELKERRAQLLSANKLVEEQRIAQRTQYDIEMMTELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PG+PPPTL +Y+P+D+L+ +DESHVT+ QI  MY+GD  RK  L EY
Sbjct: 305 GIENYSRYLSGRTPGDPPPTLLDYLPDDALMIIDESHVTVSQIGAMYKGDRSRKENLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS MDNRPLRFEE+  + P TI VSATPG +ELE+  G + EQ+IRPTGL+DP +E
Sbjct: 365 GFRMPSAMDNRPLRFEEFEAIAPQTIYVSATPGDFELERSNGEVAEQVIRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI  + ++G R+L+T LTKRMAEDLT+YL E N++VRY+HS++ T+E
Sbjct: 425 VRPVGDQVDDLLSEIYKSVEKGERVLVTTLTKRMAEDLTDYLSEHNVKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRAGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSARSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-PILLE 739
           +++ + ILY D ITKS+  AIDET RRR+ Q  +N KH I P+++ +KI++V+D      
Sbjct: 545 HLDGRAILYGDRITKSMAKAIDETQRRRDIQHAYNVKHGIEPKALIKKILDVMDVGEDAS 604

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
                 +     +  LS K+    +K L  +MH  A +L FE+AA +RDEI  L+    
Sbjct: 605 PQDNLQLIRKESKKILSAKEIATQIKQLETKMHAYASDLEFEKAASVRDEIHELQQQLI 663


>gi|325662412|ref|ZP_08151021.1| UvrABC system protein B [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471414|gb|EGC74637.1| UvrABC system protein B [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 663

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/661 (53%), Positives = 475/661 (71%), Gaps = 3/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI QL+KG     + Q LLGVTGSGKTFTMA VI+ + +P +
Sbjct: 1   MDHFELVSEYAPTGDQPQAIDQLVKGFQEGNQCQTLLGVTGSGKTFTMANVIQQLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYI K+S+IN++ID+
Sbjct: 61  IIAHNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSAINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E+++ L++ QY
Sbjct: 121 LRHSATAALSERRDVIIVASVSCIYGLGSPIDYQEMVISLRPGMIKDRDEVIAKLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD +EIFP+  ED A R   FG++IE I+E   LTG+    +  +
Sbjct: 181 DRNDMDFKRGTFRVRGDVLEIFPAISEDYAIRAEFFGDEIERITEIDLLTGEIKSELSHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV  + +++ A K I+EEL+ ++   + E +LLEAQR+ +R  +D+EM+  TG
Sbjct: 241 AIFPASHYVVSKESIDRATKAIEEELEEQVRYFKSEDKLLEAQRIAERTNFDIEMMRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTG  PGE P TL +Y P+D ++ +DESH TIPQI GMY GD  RK TL
Sbjct: 301 FCSGIENYSRHLTGLKPGEAPHTLIDYFPDDFIIMIDESHKTIPQIGGMYAGDRSRKKTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL FEE+       + VSATPG +E E+ + +  EQ+IRPTGL+DP
Sbjct: 361 VDYGFRLPSALDNRPLNFEEFESKVNQMLFVSATPGEYE-ERNELLRAEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++D+  E+N    +  ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ 
Sbjct: 420 EVEVRPVEGQIDDLVGEVNKEIAKKNKVLITTLTKRMAEDLTDYMRELGIRVKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRD+R+  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERTEIIRDMRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YADT+T S+Q AI+ET RRR+ Q+E+N+KH I P+++ + + ++I    
Sbjct: 540 AARNAEGHVIMYADTMTDSMQAAIEETKRRRQVQMEYNEKHGITPKTIHKSVRDLISISK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
              +    +  D +  S+S+K+ +A +K + K+M  AA  LNFE AA +RD++   K   
Sbjct: 600 KVSSEEMKLEKDPE--SMSEKELQAAIKDINKKMKKAAAELNFEVAAELRDQLIEFKKKL 657

Query: 798 Y 798
            
Sbjct: 658 L 658


>gi|229822874|ref|ZP_04448944.1| hypothetical protein GCWU000282_00164 [Catonella morbi ATCC 51271]
 gi|229787687|gb|EEP23801.1| hypothetical protein GCWU000282_00164 [Catonella morbi ATCC 51271]
          Length = 660

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/656 (53%), Positives = 466/656 (71%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   Y PSGDQP AI  L++G++   K Q+LLG TG+GKTFT+A VI+   RP +V+A
Sbjct: 3   FQLVAPYSPSGDQPEAIEALVQGVNDGVKEQVLLGATGTGKTFTIANVIKQTGRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE   FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 63  HNKTLAGQLYSELLEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA+ +L+ER D IVV+SVSCIYG+   E+Y   ++ L+ G  + +  LL+ LV+ Q+ R 
Sbjct: 123 SASSALIERRDVIVVASVSCIYGLVDPENYRNHVLSLREGMEIPRNVLLARLVEMQFVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIF +  +    RV  FG++IE I     LTG+   +V+   I+
Sbjct: 183 DIDFQRGTFRVRGDVVEIFMASRDKEVVRVEFFGDEIERIRVVDFLTGEIKYDVDHYPIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+V  +     A++ I++EL+ RL EL  + +LLEAQRLEQR TYDLEM+   G C 
Sbjct: 243 PATHFVASQEQTAVAVESIRQELEERLAELRADNKLLEAQRLEQRTTYDLEMMLEMGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG+ P TL ++ P+D L+ VDESH+T+ QI GMY GD  RK  L +Y
Sbjct: 303 GIENYSRHIDGRAPGQAPYTLLDFFPDDFLIVVDESHITMSQIRGMYNGDRGRKQQLIDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       I VSATPG +ELE   G +++QIIRPTGL+DP VE
Sbjct: 363 GFRLPSALDNRPLRLEEFEEHVNQIIYVSATPGPYELEHTGGEVIQQIIRPTGLLDPVVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+ +T LTK+MAEDLT+YL E +I+V+Y+HS++KTLE
Sbjct: 423 VRPIEGQIDDLVAEIKARTERDERVFITTLTKKMAEDLTDYLKELDIKVKYLHSDIKTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 483 RTEIIRDLRLGVFDVLVGINLLREGLDVPEVTLVAILDADKEGFLRSERSLVQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT S+Q AI+ET RRR  Q+ +N++H I P+++K++I ++I      +
Sbjct: 543 NANGRVIMYADQITASMQYAIEETERRRSIQMAYNQEHGIVPKTIKKEIRDLIRITHDVE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 S+  Q   LS+ + +  L+ L  +M  AA +LNFE AA +RD I  LK +
Sbjct: 603 NEDKQESLLKQFRKLSRLQREEQLERLEMEMRQAAKDLNFEAAADLRDMIMELKGA 658


>gi|257485513|ref|ZP_05639554.1| excinuclease ABC subunit B [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289624159|ref|ZP_06457113.1| excinuclease ABC subunit B [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648591|ref|ZP_06479934.1| excinuclease ABC subunit B [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330869809|gb|EGH04518.1| excinuclease ABC subunit B [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330987408|gb|EGH85511.1| excinuclease ABC subunit B [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331010689|gb|EGH90745.1| excinuclease ABC subunit B [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 671

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/670 (54%), Positives = 485/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +
Sbjct: 1   MSEFQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQVKRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+I+P+  +  A RV +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLIEAMEGIKVELQERLEYLRTQNKLVEAQRLEQRTRFDLEMMLELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G +VEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR A TQV+D+  EI+       R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ 
Sbjct: 420 QIEIRPALTQVDDLLSEIHKRTALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S++ AI ET RRR+KQL  N +H I P+ V + + ++++   
Sbjct: 540 AARNLNGRAILYADRITGSMERAIGETERRRDKQLAFNLEHGITPKGVFKDVADIMEGAT 599

Query: 738 LEDAATTNISIDAQQLS---------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  + +      A+             S  +    ++ L ++M+  A +L FE AA++RD
Sbjct: 600 VPGSRSKKRKGMAKAAEENARYENELRSPSEINKRIRQLEEKMYQLARDLEFEAAAQMRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EIGKLRERLL 669


>gi|323693174|ref|ZP_08107392.1| UvrABC system protein B [Clostridium symbiosum WAL-14673]
 gi|323502657|gb|EGB18501.1| UvrABC system protein B [Clostridium symbiosum WAL-14673]
          Length = 662

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/655 (53%), Positives = 471/655 (71%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI  L+KG     + + LLGVTGSGKTFTMA VI+ +Q+P +++A
Sbjct: 3   FKLHSEFKPTGDQPQAIEALVKGFKEGNQCETLLGVTGSGKTFTMANVIQQLQKPTLIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID++RH
Sbjct: 63  HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E++  L+  QY R 
Sbjct: 123 SATAALSERQDVIIVASVSCIYGLGSPIDYKEMVISLRPGMIKDRDEIIHKLIDIQYTRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD +EI+P++    A+RV  FG++++ I+E   LTG+    +  I I+
Sbjct: 183 DMDFKRGSFRVRGDVLEIYPAYSAGDAYRVEFFGDEVDRIAEIDTLTGEVKSQLGHIAIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV PR  +  A   I EELK+R+ E + E +LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 243 PASHYVIPREKMEQAATNILEELKVRVAEFKSEDKLLEAQRISERTNFDVEMMRETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PGEPP TL +Y PE+ L+ VDESH+T+PQ+ GMY GD  RK TL  +
Sbjct: 303 GIENYSRHLTGSLPGEPPCTLIDYFPEEFLIIVDESHITLPQVRGMYAGDRSRKQTLVNF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATP  +E E  + +  EQIIRPTGL+DPP+E
Sbjct: 363 GFRLPSALDNRPLNFSEFESKIDQIMFVSATPSKYEEEH-EMLRTEQIIRPTGLLDPPIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N   ++G ++L+T LTKRMAEDL++Y+ E  IRV+Y+HS++ TLE
Sbjct: 422 VRPVEGQIDDLVSEVNREVEKGFKVLITTLTKRMAEDLSDYMREVGIRVKYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQT+GRAAR
Sbjct: 482 RAEIIRDMRLNVFDVLVGINLLREGLDIPEISLVAILDADKEGFLRSETSLIQTVGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S++ AI ET RRR  Q  +N++H I P ++K+ + ++I      +
Sbjct: 542 NSEGHVIMYADNITDSMRAAIVETERRRRIQQAYNEEHGITPTTIKKAVRDLITISQAAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T  ++ D +  S+ KK+ +  +K L K+MH AA  LNFEEAA +RD +  +K 
Sbjct: 602 GITNEVTKDPE--SMDKKELEKLIKELMKKMHKAAAELNFEEAAALRDRMTEIKK 654


>gi|261392389|emb|CAX49931.1| UvrABC system protein B (UvrB protein; excinuclease ABC subunit B)
           [Neisseria meningitidis 8013]
          Length = 675

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/667 (53%), Positives = 481/667 (72%), Gaps = 5/667 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP+AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPSAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+           ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDGGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIK 667

Query: 795 SSPYFQG 801
               F G
Sbjct: 668 EGLLFGG 674


>gi|197122989|ref|YP_002134940.1| excinuclease ABC subunit B [Anaeromyxobacter sp. K]
 gi|196172838|gb|ACG73811.1| excinuclease ABC, B subunit [Anaeromyxobacter sp. K]
          Length = 699

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/655 (54%), Positives = 474/655 (72%), Gaps = 1/655 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +Q+ + P+GDQP AI +L  G+   E+ Q+LLGVTGSGKTFT+A V+  ++RP +V+
Sbjct: 2   PFDLQSAFQPTGDQPRAIGELTDGLRRGERHQVLLGVTGSGKTFTVANVVAEVKRPTLVI 61

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQLY+EFK  FP  AV YFVSYYDYYQPEAYVP TDTYIEK+SSIN++IDRMR
Sbjct: 62  AHNKTLAAQLYAEFKELFPTAAVHYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDRMR 121

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT +LL RND ++V+SVSCIYG+G+ E+Y  ++ +L+ G    +   + SL+  QY+R
Sbjct: 122 HAATHALLTRNDVLIVASVSCIYGLGTAEAYHGLLQRLERGQEFLRDRFIRSLIDIQYER 181

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+   RGTFRV GD+IE+FP + ED A R+  FG+ +E I EF PL G  +  ++ + I
Sbjct: 182 NDLDFHRGTFRVRGDTIEVFPPYEEDRAVRIEFFGDVVESIHEFDPLRGVTLAELDKVAI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           + NSHYV+       A+  ++EEL+ RL EL+   +L+EAQRLEQR  +DLEMLE  G C
Sbjct: 242 FPNSHYVSAPEVRARAIAGVREELRERLGELKAANKLVEAQRLEQRTMFDLEMLEQMGFC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+GR  G+PPP L +Y P+D LL +DESH T+PQI  MYRGD  RK TL E
Sbjct: 302 PGIENYSRWLSGRKAGDPPPCLLDYFPKDFLLVIDESHQTVPQIGSMYRGDRSRKETLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+  L    I VSATP ++ELEQ QG++VEQ+IRPTGLVDP +
Sbjct: 362 FGFRLPSALDNRPLKFEEFQALVRQAIYVSATPAAYELEQAQGVVVEQLIRPTGLVDPQI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   +QV+D+  E+   A+ G R+L+T LTKRMAEDLTEY  +  +R RY+HS++ TL
Sbjct: 422 EVRPVGSQVDDLLGEVRKRAEAGERVLVTTLTKRMAEDLTEYFTDVGVRCRYLHSDIDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  +IRDLR G+FDVL+GINLLREGLDIPE  LVA+LDADKEGFLRS  SLIQTIGRAA
Sbjct: 482 ERSAVIRDLRRGEFDVLIGINLLREGLDIPEVSLVAVLDADKEGFLRSAVSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN +V+LYAD IT S++ AIDET RRRE Q  +N +H I P +VK  I ++   ++  
Sbjct: 542 RNVNGRVLLYADAITASMRQAIDETGRRREIQERYNAEHGITPTTVKRNISDLGMAVVEA 601

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           D  T  ++ +        ++    + +L ++M  AA  L FE+AA++RD ++ LK
Sbjct: 602 DYVTVPLAAEEGAEYR-PEQLPEIVAALEREMQDAARALEFEKAAQLRDRVQALK 655


>gi|229523191|ref|ZP_04412598.1| excinuclease ABC subunit B [Vibrio cholerae TM 11079-80]
 gi|229339554|gb|EEO04569.1| excinuclease ABC subunit B [Vibrio cholerae TM 11079-80]
          Length = 676

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/669 (54%), Positives = 476/669 (71%), Gaps = 11/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG    R++    I
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLARFTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATP  +EL +  G + EQ++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    R+L+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERVLVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++  I PQ +K  + ++++   + 
Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIA 604

Query: 740 DAATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            +                  A    L+ ++ +  +  L   M+  A NL FE AA+ RDE
Sbjct: 605 KSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRDE 664

Query: 790 IKRLKSSPY 798
           I  L+    
Sbjct: 665 IHLLRQQFI 673


>gi|50914390|ref|YP_060362.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS10394]
 gi|68053077|sp|Q5XBN4|UVRB_STRP6 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|50903464|gb|AAT87179.1| Excinuclease ABC subunit B [Streptococcus pyogenes MGAS10394]
          Length = 663

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/659 (53%), Positives = 469/659 (71%), Gaps = 3/659 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +D   F++++ Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P
Sbjct: 5   RDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + +  LL+ LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTG+ I  V+
Sbjct: 185 QFERNDIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML  
Sbjct: 245 HLVLFPATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTSGVENYSRHMDGRLPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+ Q    I+EQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGEYEMSQT-NTIIEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +++R +  Q++D+  EIN    +  R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEIDVRPSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+  VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I  +I  
Sbjct: 544 GRAARNVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   +   +D    S+S+ + K  + +L+KQM  AA+ L+FE AA++RD I  LK
Sbjct: 604 SKTSHNDISKEEMD--YESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660


>gi|322376794|ref|ZP_08051287.1| excinuclease ABC subunit B [Streptococcus sp. M334]
 gi|321282601|gb|EFX59608.1| excinuclease ABC subunit B [Streptococcus sp. M334]
          Length = 662

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNELVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|307708786|ref|ZP_07645248.1| excinuclease ABC, B subunit [Streptococcus mitis NCTC 12261]
 gi|307615152|gb|EFN94363.1| excinuclease ABC, B subunit [Streptococcus mitis NCTC 12261]
          Length = 662

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDINSLNKQERKDLVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|307269815|ref|ZP_07551145.1| excinuclease ABC subunit B [Enterococcus faecalis TX4248]
 gi|306513925|gb|EFM82527.1| excinuclease ABC subunit B [Enterococcus faecalis TX4248]
          Length = 665

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/661 (54%), Positives = 474/661 (71%), Gaps = 1/661 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    F + + Y P+GDQPAAIA+L+ G+   EK Q+LLG TG+GKTFT++ VI+ + +P
Sbjct: 5   ETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCI+G+G    YSQ +V L++G  +++ ELL SLV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E   LTG+ +   E
Sbjct: 185 QFERNDIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I+  +H+VT    +  A+  I+EEL+ RL  L  E +LLEAQRLEQR  YD+EM+  
Sbjct: 245 HVAIFPATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    IENYSR++ GR  GEPP TL ++ P+D LL +DESHVT+PQI GMY GD  RK 
Sbjct: 305 MGYTSGIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+EQ +  +V+QIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VEIR    Q++D+  EI+   ++  R+ +T LTK+MAEDLT+Y  E  ++V+Y+HS+
Sbjct: 424 DPEVEIRPIMGQIDDLVGEIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           VKTLER EIIRDLRLG+FD+L+GINLLREG+D+PE  L+AILDADKEGFLRS+ SL+QT+
Sbjct: 484 VKTLERTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTM 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN   KVI+YAD IT S+Q A+DET RRR  Q  +N++H I P+++ ++I ++I  
Sbjct: 544 GRAARNAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               D   T + +D     LS+++    L  L ++M  AA  L+FE AA +RD I  LK 
Sbjct: 604 SKTADKDETVVQLDKSYEDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKD 663

Query: 796 S 796
           +
Sbjct: 664 A 664


>gi|304386222|ref|ZP_07368555.1| excision endonuclease subunit UvrB [Pediococcus acidilactici DSM
           20284]
 gi|304327579|gb|EFL94806.1| excision endonuclease subunit UvrB [Pediococcus acidilactici DSM
           20284]
          Length = 673

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/663 (52%), Positives = 465/663 (70%), Gaps = 2/663 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           ++   F++ + Y P+GDQP AI QL+ GI   EK Q+LLG TG+GKTFT++ VI+ + +P
Sbjct: 11  EENRQFELVSKYQPTGDQPTAIKQLVDGIQKGEKEQILLGATGTGKTFTISNVIQQVNKP 70

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            ++++ NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++I
Sbjct: 71  TLILSHNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEI 130

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D +RHSAT SLLERND IVV+SVS I+G+G    Y    + L++G  +++ +LL  LV  
Sbjct: 131 DELRHSATSSLLERNDVIVVASVSSIFGLGDPREYRDQALSLRVGQEIDRNQLLRELVDI 190

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY+R DI   RG FRV GD +EIFP+  E  + RV  FG++I+ + E   LTG+ I + +
Sbjct: 191 QYERNDIDFQRGRFRVHGDVVEIFPAANEAHSIRVEFFGDEIDRMREMDALTGEIIGDRD 250

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I I+  +H++T    +  A++ I+ ELK RL ELE +G+LLEAQRL+QR TYD+EML  
Sbjct: 251 HITIFPATHFMTNEDRMEHAIEGIEAELKDRLAELEGQGKLLEAQRLKQRTTYDIEMLRE 310

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    IENYSR++ GR PGEPP TL ++ P+D LL VDESHVT+PQ+ GMY GD  RK 
Sbjct: 311 MGYTNGIENYSRHMDGRKPGEPPYTLLDFFPDDFLLVVDESHVTMPQVRGMYNGDRARKQ 370

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPL+ EE+       + +SATPG +E  +    +V+QIIRPTGL+
Sbjct: 371 QLIDYGFRLPSALDNRPLKLEEFEKHVHQVVYMSATPGDYETART-DHVVQQIIRPTGLL 429

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +E+R    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+YL +  I+V Y+HS+
Sbjct: 430 DPTIEVRPIMGQMDDLLGEINQRVEKDERVFVTTLTKKMAEDLTDYLKDMGIKVAYLHSD 489

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           VKTLER  IIRDLRLGK+DVLVGINLLREG+D+PE  LVAILDADKEGFLR+  S+IQ  
Sbjct: 490 VKTLERTRIIRDLRLGKYDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNTRSMIQVA 549

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN +  VI+YAD +T+S++  IDET RRR  Q  +NK+H I P ++K+ I  +I  
Sbjct: 550 GRAARNEHGHVIMYADHVTQSMKETIDETARRRSIQEAYNKEHGITPHTIKKDIRSLISA 609

Query: 736 ILL-EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               ED    +  +D     + +K  K  ++SL  QM  AA  L+FE AA +RD +  LK
Sbjct: 610 TTETEDTGEKDDFLDVDFADMDRKDQKEMIESLEDQMRAAAKELDFERAANLRDTVLELK 669

Query: 795 SSP 797
           +  
Sbjct: 670 AQI 672


>gi|297578626|ref|ZP_06940554.1| excinuclease ABC subunit B [Vibrio cholerae RC385]
 gi|297536220|gb|EFH75053.1| excinuclease ABC subunit B [Vibrio cholerae RC385]
          Length = 676

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/669 (54%), Positives = 477/669 (71%), Gaps = 11/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF ++IE IS F PLTG    R++    I
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATP  +EL +  G + EQ++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GRAA
Sbjct: 485 ERVEIIRDLRLGIFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++  I PQ +K  + ++++   + 
Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIA 604

Query: 740 DAATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            +                  A    L+ ++ +  +  L   M+  A NL FE AA+ RDE
Sbjct: 605 KSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRDE 664

Query: 790 IKRLKSSPY 798
           I +L+    
Sbjct: 665 IHQLRQQFI 673


>gi|238028103|ref|YP_002912334.1| excinuclease ABC subunit B [Burkholderia glumae BGR1]
 gi|237877297|gb|ACR29630.1| Excinuclease ABC, B subunit [Burkholderia glumae BGR1]
          Length = 696

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/673 (54%), Positives = 482/673 (71%), Gaps = 4/673 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
             D + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + R
Sbjct: 19  EFDGSPFQLYQPYPPAGDQPTAIDTLVEGVEDGLSFQTLLGVTGSGKTFTMANTIARLGR 78

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE 
Sbjct: 79  PAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEH 138

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+ 
Sbjct: 139 IEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRNGDRIGQRDVIARLIA 198

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +
Sbjct: 199 MQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKI 258

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               +Y +SHYVTPR T+  A++ IKEEL+ RL    +E RL+EAQRLEQR  +DLEML+
Sbjct: 259 ARFTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHRENRLVEAQRLEQRTRFDLEMLQ 318

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK
Sbjct: 319 ELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYNGDRARK 378

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L  YGFRLPS +DNRPL+F E+       + VSATP  +E     G + EQ++RPTGL
Sbjct: 379 ENLVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYEQRVS-GQVAEQVVRPTGL 437

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           VDP +E+R A +QV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++VRY+HS
Sbjct: 438 VDPEIEVRPASSQVDDVLAEINERVKAGERVLITVLTKRMAEQLTEFLADHGVKVRYLHS 497

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQT
Sbjct: 498 DIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQT 557

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARNVN K ILYAD +T S++ AIDET RRR KQ+ HN+K  I P+ V ++I ++ID
Sbjct: 558 IGRAARNVNGKAILYADHMTDSMRRAIDETERRRAKQIAHNEKLGITPRGVVKRIKDIID 617

Query: 735 PILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            +   D A   +      A+   +S+K+    +K L KQM   A NL FE+AA+ RD++ 
Sbjct: 618 GVYNVDEARAELKEAQQRAKFEDMSEKQLAKEIKRLEKQMTDYAKNLEFEKAAQTRDQLA 677

Query: 792 RLKSSPYFQGLDD 804
            L+   +   + D
Sbjct: 678 LLRERVFGANVGD 690


>gi|238749841|ref|ZP_04611345.1| UvrABC system protein B [Yersinia rohdei ATCC 43380]
 gi|238711770|gb|EEQ03984.1| UvrABC system protein B [Yersinia rohdei ATCC 43380]
          Length = 694

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/676 (53%), Positives = 470/676 (69%), Gaps = 5/676 (0%)

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
           S S          F++ +++ P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A 
Sbjct: 16  SISPAGSKFMSKLFKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVAN 75

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           VI  + RP +++APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK
Sbjct: 76  VIADLNRPTMILAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEK 135

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           ++S+NE I++MR SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ 
Sbjct: 136 DASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRS 195

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           +L  L + QY R D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLT
Sbjct: 196 ILRRLSELQYSRNDQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLT 255

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           GQ    V    +Y  +HYVTPR  +  AM+ IK EL  R   L    +L+E QR+ QR  
Sbjct: 256 GQLQHEVPRFTVYPKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLIEEQRITQRTQ 315

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           +DLEM+   G C  IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY
Sbjct: 316 FDLEMMNELGYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMY 375

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
           +GD  RK TL EYGFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+    +V+Q
Sbjct: 376 KGDRSRKETLVEYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGDEVVDQ 435

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           ++RPTGL+DP +E+R   TQV+D+  EI + A    R+L+T LTKRMAEDLT+YL E   
Sbjct: 436 VVRPTGLLDPLIEVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTDYLGEHGA 495

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS
Sbjct: 496 RVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 555

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           + SLIQTIGRAARN+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +
Sbjct: 556 ERSLIQTIGRAARNLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNK 615

Query: 728 KIMEVID-----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
           K+ +++                 ++      SLS K     ++ L  +M+  A NL FE+
Sbjct: 616 KVGDILQLGQPSMRGKGKGRGGKVADTNNYQSLSPKALDQKIRELEAKMYTHAQNLEFEQ 675

Query: 783 AARIRDEIKRLKSSPY 798
           AA +RD++ +L+    
Sbjct: 676 AAELRDQVHQLRQQFI 691


>gi|88706030|ref|ZP_01103738.1| excinuclease ABC, B subunit [Congregibacter litoralis KT71]
 gi|88699744|gb|EAQ96855.1| excinuclease ABC, B subunit [Congregibacter litoralis KT71]
          Length = 672

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/670 (55%), Positives = 483/670 (72%), Gaps = 10/670 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + P+GDQPAAI  +++GI +    Q LLGVTGSGKTFTMA VIE +QRP IV
Sbjct: 3   KPFKVNSSFKPAGDQPAAIKSIVEGIQAGLAAQTLLGVTGSGKTFTMAHVIEQLQRPTIV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  MAHNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER DCIVV++VS IYG+G  +SY +M++ +  G+ ++Q+E+L  L + QY+
Sbjct: 123 RLSATKALLERKDCIVVATVSAIYGLGDPKSYFKMVMHISRGEMIDQREVLRHLAELQYQ 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RGT+RV GD I++FP+  E  A R+ +F  ++E IS F PLTG  I  V  + 
Sbjct: 183 RNDIDFARGTYRVRGDVIDVFPAEAEAEAIRIELFDEEVENISLFDPLTGAIIAKVPRVT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVT R  +  A+++I+ EL  R+ +L+   +L+EAQRL QR  YD+EM+   G 
Sbjct: 243 IYPKTHYVTSRDIMLNAIEHIEVELDERVKQLKSVEKLVEAQRLSQRTRYDIEMIRELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           CQ +ENYSRYL+GR PGE PPTL+EY+P+D+L+ +DESH +IPQI  MY+GD  RK TL 
Sbjct: 303 CQGVENYSRYLSGRAPGEAPPTLYEYLPDDALVIIDESHASIPQIGAMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPLRFEEW  L P  + VSATPG +E E   G +VEQ++RPTGL DP 
Sbjct: 363 EYGFRLPSALDNRPLRFEEWENLLPQAVFVSATPGPYE-EAHAGQVVEQVVRPTGLTDPE 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR A TQV+D+  EI+ A + G R+L+T LTKRM+EDLTEYL E ++RVRY+HS++ T
Sbjct: 422 IEIRPATTQVDDLLGEIHKAVEMGDRVLVTTLTKRMSEDLTEYLNEHDVRVRYLHSDIDT 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR 
Sbjct: 482 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSDRSLIQTIGRG 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  + ILYAD +T S+Q AIDET RRR KQ+  N+ +NI P  V + I ++++    
Sbjct: 542 ARNLRGRAILYADKVTGSMQRAIDETDRRRRKQVAFNEANNITPIGVTKSIQDIMEGARR 601

Query: 739 ---------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                    +  A   ++   + L LS       L  +  QMH  A NL FE+AA +RD+
Sbjct: 602 MPTKAKAKGQKVAEETLAYGQELLKLSPAALSRRLDKMEAQMHEHAKNLEFEQAAALRDQ 661

Query: 790 IKRLKSSPYF 799
           +  +K   + 
Sbjct: 662 LTEIKQQTFM 671


>gi|331268610|ref|YP_004395102.1| exconuclease ABC subunit B [Clostridium botulinum BKT015925]
 gi|329125160|gb|AEB75105.1| exconuclease ABC, B subunit [Clostridium botulinum BKT015925]
          Length = 663

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/662 (53%), Positives = 473/662 (71%), Gaps = 4/662 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           + +  F++ + Y P+GDQP AI  + KGI   +K Q LLGVTGSGKTFTMA +IE +Q+P
Sbjct: 6   EKMDKFKIHSVYKPTGDQPKAIKSISKGILEGDKFQTLLGVTGSGKTFTMANIIEKVQKP 65

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LAAQL SEF+ FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++I
Sbjct: 66  TLVLAHNKTLAAQLTSEFREFFPENCVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEI 125

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT +LLER D IVV+SVSCIYG+G+ E Y ++ V L+ G   ++ E++  LV  
Sbjct: 126 DKLRHSATSALLERKDVIVVASVSCIYGLGNPEEYKKLTVSLREGMEKDRDEIIRQLVDI 185

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY+R +I  +RGTFR  GD ++IFP+   ++  RV  FG++I++I EF  LTG  +   +
Sbjct: 186 QYERNEINFVRGTFRARGDVLDIFPASSTNIGIRVEFFGDEIDKIREFDVLTGNILNTRK 245

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              I+  SH+ T +  L  A+K I+EEL+ R+ EL  + +LLE QR++QR  +D+EM+  
Sbjct: 246 HASIFPASHFATSKEKLEIAIKKIEEELEERVKELIAQDKLLEVQRVKQRTNFDIEMMRE 305

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR L GRNPG PP TL +Y P+D LLF+DESHVT+PQI  MY GD  RK 
Sbjct: 306 VGYCSGIENYSRVLDGRNPGTPPKTLMDYFPDDFLLFIDESHVTLPQIKAMYGGDRSRKD 365

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L EYGFRLP   DNRPL+F+E+      T+ VSATP  +E E     I EQIIRPTGL+
Sbjct: 366 NLVEYGFRLPCAYDNRPLKFQEFEGKLNQTVFVSATPSQYEFEHSTN-IAEQIIRPTGLL 424

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP + ++  + Q++D+Y  IN    +G R+L+T LTK+M+EDLT+YL E  ++  Y+HS 
Sbjct: 425 DPEIIVKPIKGQIDDLYSNINETINRGFRVLVTTLTKKMSEDLTDYLKEMGVKTEYLHSS 484

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + T++R+EIIRDLR GKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+T+LIQTI
Sbjct: 485 IDTIKRMEIIRDLRKGKFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETALIQTI 544

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN  SKVI+YADTITK++  AI ET RRRE Q+++N++H I P +V + I +VI  
Sbjct: 545 GRAARNSESKVIMYADTITKAMDKAISETNRRREIQMQYNEEHGIVPTTVLKDIRDVIQT 604

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            + ED     ++    + ++SK++ +  +    K+M   A  L FE+AA IRDEI++LK 
Sbjct: 605 KVSEDKEEYIVN---NKNTMSKEEIEKLINKYEKEMKKVAKELQFEKAAEIRDEIQKLKK 661

Query: 796 SP 797
             
Sbjct: 662 QL 663


>gi|254291758|ref|ZP_04962544.1| excinuclease ABC subunit B [Vibrio cholerae AM-19226]
 gi|150422351|gb|EDN14312.1| excinuclease ABC subunit B [Vibrio cholerae AM-19226]
          Length = 676

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/669 (54%), Positives = 477/669 (71%), Gaps = 11/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG    R++    I
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLARFTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATP  +EL +  G + EQ++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGLKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++  I PQ +K  + ++++   + 
Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIA 604

Query: 740 DAATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            +                  A    L+ ++ +  +  L   M+  A NL FE AA+ RDE
Sbjct: 605 KSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRDE 664

Query: 790 IKRLKSSPY 798
           I +L+    
Sbjct: 665 IHQLRQQFI 673


>gi|294501793|ref|YP_003565493.1| excinuclease ABC subunit B [Bacillus megaterium QM B1551]
 gi|295707143|ref|YP_003600218.1| excinuclease ABC subunit B [Bacillus megaterium DSM 319]
 gi|28971417|emb|CAD70605.1| excinuclease ABC, subunit B [Bacillus megaterium]
 gi|294351730|gb|ADE72059.1| excinuclease ABC, B subunit [Bacillus megaterium QM B1551]
 gi|294804802|gb|ADF41868.1| excinuclease ABC, B subunit [Bacillus megaterium DSM 319]
          Length = 659

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/656 (54%), Positives = 477/656 (72%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +++KGI   ++ Q+LLG TG+GKTFTM+ VI+ + +P ++MA
Sbjct: 5   FELVSPYQPQGDQPKAIEKIVKGIKEGKQHQVLLGATGTGKTFTMSNVIKEINKPTLIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y +M+V L++G   E+ +LL +LV  QY+R 
Sbjct: 125 SATSSLFERKDVIIIASVSCIYGLGSPEEYKEMVVSLRVGMEKERNQLLRTLVDVQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP   ++   RV  FG++I+ I E   LTG+ I + E + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPVSRDEHCIRVEFFGDEIDRIREVDALTGEIIGDREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ +L +L++ G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMRVAIQNIEKELEEQLEKLKEAGKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL ++ PED LL VDESHVTIPQ+ GMY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGSTPYTLLDFFPEDFLLVVDESHVTIPQVRGMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       + VSATPG +ELE+   +I EQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFDEFEQHINQIVHVSATPGPYELEKAPDVI-EQIIRPTGLLDPNIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+   ++  R+L+T LTK+M+EDLT YL E  I+V+Y+HSEVKTLE
Sbjct: 424 VRPIEGQIDDLIGEIHDRIKRNERVLVTTLTKKMSEDLTNYLKEIGIKVQYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIR+LRLGK+DVLVGINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRELRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YAD IT S+ +AI+ET RRR  Q  +N++H I P ++++++   I   ++ +
Sbjct: 544 NANGHVIMYADRITNSMDIAINETKRRRSIQEAYNEEHGITPTTIQKEVRGSIRATVVAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T     A    L+KK+    ++ + ++M  AA  LNFE AA +RD I  LK+ 
Sbjct: 604 DTETYEEAPA-FDKLNKKEKAKLVEEMEQEMKEAAKALNFERAAELRDLILELKAE 658


>gi|297583389|ref|YP_003699169.1| excinuclease ABC subunit B [Bacillus selenitireducens MLS10]
 gi|297141846|gb|ADH98603.1| excinuclease ABC, B subunit [Bacillus selenitireducens MLS10]
          Length = 665

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/663 (53%), Positives = 474/663 (71%), Gaps = 2/663 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           ++    FQ+++ Y P+GDQP AI +L++GI  ++  Q LLG TG+GKTFT++ V++ + R
Sbjct: 3   TETQDVFQLESKYSPAGDQPKAIEELVRGIEEKKTFQTLLGATGTGKTFTVSNVVKEINR 62

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+A NK LA QLYSEFK FFP+N VEYFVSYYDYYQPEAY+P++DTYIEK++SIN++
Sbjct: 63  PTLVIAHNKTLAGQLYSEFKEFFPNNRVEYFVSYYDYYQPEAYIPQSDTYIEKDASINDE 122

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ID++RHSAT +L ERND ++V+SVSCIYG+GS E Y  ++V L+ G   ++ +LL  LV 
Sbjct: 123 IDKLRHSATSALFERNDVLIVASVSCIYGLGSPEEYRDLVVSLRTGMERDRNQLLRQLVD 182

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY+R DI   RGTFRV GD +EIFP+  ++   RV  FG++I+ I+E   LTG+ +   
Sbjct: 183 VQYERNDINFTRGTFRVRGDVVEIFPASRDEHCLRVEFFGDEIDRITEVDALTGEILGER 242

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           + + I+  SH+VT    L  A+  I+ EL+ RL EL    +LLEAQRLEQR  YD+EM+ 
Sbjct: 243 DHVAIFPASHFVTREEKLKRAIVNIEAELEERLKELHANDKLLEAQRLEQRTRYDIEMMH 302

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSR+LT R PG  P TL +Y P+D L+ VDESHVT+PQ+ GMY GD  RK
Sbjct: 303 EMGYCSGIENYSRHLTFREPGATPYTLLDYFPDDFLIVVDESHVTLPQVRGMYNGDQARK 362

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L ++GFRLPS  DNRPL+FEE+       + +SATPG +ELE+    + EQIIRPTGL
Sbjct: 363 QVLVDHGFRLPSAKDNRPLKFEEFEDHIHQALFISATPGPYELEK-NPEMTEQIIRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP V++R    Q++D+ +EI L A++  R+L+T LTK+M+EDLT+YL E  IRV+Y+HS
Sbjct: 422 LDPTVDVRPIEGQIDDLLEEIRLRAERDERVLVTTLTKKMSEDLTDYLKEVGIRVQYLHS 481

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++KTLERI+IIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQT
Sbjct: 482 DIKTLERIQIIRDLRRGDFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQT 541

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N  VI+YAD IT+S+ +AI ET RRR  Q  +N++H I P ++ + I E+I 
Sbjct: 542 MGRAARNSNGHVIMYADKITRSMDVAISETKRRRSIQEAYNEEHGITPMTIVKAIPELIQ 601

Query: 735 PI-LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                ++         A Q  LSKK+ +  ++ + K+M  AA  L+FE AA +RD +  L
Sbjct: 602 ATRAADEEEAFEAFTKAPQEKLSKKEREKVIERMEKEMKEAAKELDFERAAELRDIVLEL 661

Query: 794 KSS 796
           K+ 
Sbjct: 662 KAE 664


>gi|331701687|ref|YP_004398646.1| UvrABC system protein B [Lactobacillus buchneri NRRL B-30929]
 gi|329129030|gb|AEB73583.1| UvrABC system protein B [Lactobacillus buchneri NRRL B-30929]
          Length = 668

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 466/657 (70%), Gaps = 2/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AI +L+ GI+  +K Q+L G TG+GKTFT++ VI  + +P +V++
Sbjct: 10  FDLVSKYKPTGDQPDAIKKLVAGINEGKKAQILKGATGTGKTFTISNVIAQVNKPTLVLS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y   +V L++G ++E+   L  LV  QY R 
Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPSEYRNHVVSLRVGQTIERDHFLRQLVDIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ I + + I I+
Sbjct: 190 DIDFQRGRFRVHGDVVEVFPASWDEHAFRIEFFGDEIDRIREVDTLTGEVIGDRDHIAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +N A+  IK+E+  ++ + EKEG+LLEAQRL+QR TYD+EM+   G   
Sbjct: 250 PATHFLTSDDVMNVALPEIKDEMDKQVAKFEKEGKLLEAQRLKQRTTYDIEMMREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++  R PG+PP TL ++ P+D LL VDESH T+PQI GMY GD  RK  L  Y
Sbjct: 310 GIENYSRFMDRRKPGQPPFTLLDFFPDDFLLVVDESHQTMPQIRGMYNGDQARKQQLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL   E+       + +SATPG +EL+Q +  +V Q+IRPTGL+DP ++
Sbjct: 370 GFRLPSALDNRPLTLSEFEQHVHQVVYMSATPGPYELDQTKD-VVNQVIRPTGLLDPTID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+V+Y+HS++KTLE
Sbjct: 429 VRPIMGQMDDLVGEINKRVDKHERVFVTTLTKKMAEDLTDYLKDLGIKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLR++ SLIQTIGRA+R
Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIGRASR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-LE 739
           N +  VI+YADT+T S++ AIDET  RR  Q+ +NKKH I P ++ + I  +I      +
Sbjct: 549 NEHGAVIMYADTVTDSMKAAIDETAHRRAIQIAYNKKHGITPTTIVKPIRNLISITKGSD 608

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           DA   +  +++    +SKK  K  L  L ++M  AA  L+FE+AA +RD I  LK  
Sbjct: 609 DAGEKDDFVESDFEQMSKKDQKDMLARLTEEMRDAAKKLDFEQAATLRDTIIELKGQ 665


>gi|330817751|ref|YP_004361456.1| Excinuclease ABC, B subunit [Burkholderia gladioli BSR3]
 gi|327370144|gb|AEA61500.1| Excinuclease ABC, B subunit [Burkholderia gladioli BSR3]
          Length = 696

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/671 (54%), Positives = 481/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 21  DGSPFQLYQPYPPAGDQPTAIETLVEGVEDGLSFQTLLGVTGSGKTFTMANTIARLGRPA 80

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 81  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 140

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 141 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRAGDRIGQRDVIARLIAMQ 200

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 201 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKIVR 260

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK+EL+ RL     E RL+EAQRLEQR  +DLEML+  
Sbjct: 261 FTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHSENRLVEAQRLEQRTRFDLEMLQEL 320

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 321 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYNGDRARKEN 380

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F E+       + VSATP  +E+    G   EQ++RPTGLVD
Sbjct: 381 LVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYEIRVS-GQTAEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A TQV+DV  EIN   + G R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 440 PEIEVRPATTQVDDVLAEINERVKAGERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K +LYAD +T S++ AIDET RRR KQ+ HN+K  I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGKALLYADRMTDSMRRAIDETERRRAKQIAHNEKLGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA+ RD++  L
Sbjct: 620 YSADEARAELKEAQQRAKFEDMSEKQLAKEIKRLEKQMVDYAKNLEFEKAAQTRDQLAVL 679

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 680 RQRVFGANVGD 690


>gi|262191538|ref|ZP_06049721.1| excinuclease ABC subunit B [Vibrio cholerae CT 5369-93]
 gi|262032592|gb|EEY51147.1| excinuclease ABC subunit B [Vibrio cholerae CT 5369-93]
          Length = 676

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/669 (54%), Positives = 477/669 (71%), Gaps = 11/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG    R++    I
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLARFTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATP  +EL +  G + EQ++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GRAA
Sbjct: 485 ERVEIIRDLRLGIFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++  I PQ +K  + ++++   + 
Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIA 604

Query: 740 DAATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            +                  A    L+ ++ +  +  L   M+  A NL FE AA+ RDE
Sbjct: 605 KSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRDE 664

Query: 790 IKRLKSSPY 798
           I +L+    
Sbjct: 665 IHQLRQQFI 673


>gi|126733419|ref|ZP_01749166.1| excinuclease ABC, B subunit [Roseobacter sp. CCS2]
 gi|126716285|gb|EBA13149.1| excinuclease ABC, B subunit [Roseobacter sp. CCS2]
          Length = 736

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/663 (62%), Positives = 523/663 (78%), Gaps = 1/663 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
              +    F + T++ P+GDQP AI +L +GI + E+ Q+LLG TG+GKTFTMAK+IE  
Sbjct: 26  EKLEGGKRFVLSTEFEPAGDQPTAIKELSEGIVNGERDQVLLGATGTGKTFTMAKMIEET 85

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES IN
Sbjct: 86  QRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARSDTYIEKESQIN 145

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           EQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y  M   + +G   +Q+++++ L
Sbjct: 146 EQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDIHVGREYDQRKIMADL 205

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           + QQY+R D    RGTFRV GDS+EI+P+HL+D AW++S FG ++E I+EF PLTG K  
Sbjct: 206 IAQQYRRNDQAFQRGTFRVRGDSLEIWPAHLDDRAWKLSFFGEELETITEFDPLTGDKTD 265

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
             E +++YANSHYVTP+PT+N A+  IK+EL+MRL +L  EG+LLEAQRLEQR  +DLEM
Sbjct: 266 TFEKVRVYANSHYVTPKPTMNQAVIGIKKELRMRLDQLVGEGKLLEAQRLEQRCNFDLEM 325

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           LE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ 
Sbjct: 326 LEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYR 385

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WELEQ  G+  EQIIRPT
Sbjct: 386 RKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFTEQIIRPT 445

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP +EIR    QV+D+ DE+   A  G R L+T LTKRMAEDLTEY++E+ I+VRYM
Sbjct: 446 GLIDPEIEIRPVDMQVDDLLDEVRKVAADGYRTLVTTLTKRMAEDLTEYMHEQGIKVRYM 505

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++ T+ERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSL+
Sbjct: 506 HSDIDTIERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLV 565

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QT GRAARN   +VI+YAD IT S++ AI ET RRR KQ+ +N++H I PQ+VK+ + ++
Sbjct: 566 QTTGRAARNAEGRVIMYADRITGSMERAIKETDRRRAKQVAYNEEHGITPQTVKKNVEDI 625

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           +  +   D     ++    +  ++     A L  LR  M  AA+NL FEEAAR+RDE+KR
Sbjct: 626 LAGLYKGDVDMNRVTAKVDK-PMAGANLAAVLDGLRTDMRKAAENLEFEEAARLRDEVKR 684

Query: 793 LKS 795
           L++
Sbjct: 685 LET 687


>gi|254460200|ref|ZP_05073616.1| excinuclease ABC, B subunit [Rhodobacterales bacterium HTCC2083]
 gi|206676789|gb|EDZ41276.1| excinuclease ABC, B subunit [Rhodobacteraceae bacterium HTCC2083]
          Length = 737

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/662 (61%), Positives = 523/662 (79%), Gaps = 1/662 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +    F++++++ P+GDQP AI +L +GI + E+ Q+LLG TG+GKTFTMAK+I+  Q
Sbjct: 30  KLEGGIAFELKSEFEPAGDQPTAIKELCEGIDAGERDQVLLGATGTGKTFTMAKMIQQTQ 89

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPAI++APNK LAAQL+ EFK FFP NAVEYFVS+YDYYQPEAYV R+DT+IEKES INE
Sbjct: 90  RPAIILAPNKTLAAQLFGEFKGFFPENAVEYFVSFYDYYQPEAYVARSDTFIEKESQINE 149

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           QIDRMRHSATR+LLER+D I+++SVSCIYGIGSVE+Y  M   L++G + +Q+ ++  LV
Sbjct: 150 QIDRMRHSATRALLERDDVIIIASVSCIYGIGSVETYGAMTQDLEVGKNYDQRSVMQDLV 209

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
            QQYKR D    RG+FRV GDS+EIFP+HLED AW+ S FG+++E I EF PLTG+K   
Sbjct: 210 AQQYKRNDAAFARGSFRVRGDSLEIFPAHLEDRAWKFSFFGDELESIVEFDPLTGEKKDT 269

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            + +++YANSHYVTP+PT+N A++ IK+EL+MRL +L  EG+LLEAQRLEQR  +D+EML
Sbjct: 270 KDRVRVYANSHYVTPKPTMNQAVQKIKQELRMRLDQLVAEGKLLEAQRLEQRTNFDIEML 329

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           E TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ R
Sbjct: 330 EATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYRR 389

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP  WELE   G+  EQIIRPTG
Sbjct: 390 KFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPSKWELEATGGVFTEQIIRPTG 449

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VEIR   TQV+D+ DE+      G R L+T LTKRM+EDLTEY++E+ I+VRYMH
Sbjct: 450 LLDPKVEIRPVDTQVDDLLDEVRKVTADGFRTLVTTLTKRMSEDLTEYMHEQGIKVRYMH 509

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ T+ERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQ
Sbjct: 510 SDIDTIERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQ 569

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAARN   +VI+YAD IT S++ A+ ET RRR KQ  +N +H I P +VK+ + +V+
Sbjct: 570 TIGRAARNAEGRVIMYADKITGSMERALGETDRRRAKQEAYNLEHGITPATVKKNVEDVL 629

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             +   D     ++    +  L+    +A L  LR  M  AA+NL FEEAAR+RDE+KRL
Sbjct: 630 AGLYKGDVDMNRVTAKIDK-PLAGANLQAVLDGLRVDMRKAAENLEFEEAARLRDEVKRL 688

Query: 794 KS 795
           ++
Sbjct: 689 EA 690


>gi|123443116|ref|YP_001007090.1| excinuclease ABC subunit B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|189038010|sp|A1JSC3|UVRB_YERE8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|122090077|emb|CAL12940.1| excinuclease ABC subunit B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 670

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/663 (54%), Positives = 470/663 (70%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ    V    +Y
Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +L+E QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEDIKVELAERRKVLLANNKLIEEQRITQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPSDGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDVIDQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLEEHGARVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-----P 735
           N+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +KI +++       
Sbjct: 545 NLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLGQPST 604

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                     ++      SL+ K     ++ L  +M+  A NL FE+AA +RD++ +L+ 
Sbjct: 605 RGKGKGRGGKVADTNNYQSLAPKALDQKIRELEAKMYTHAQNLEFEQAAELRDQVHQLRQ 664

Query: 796 SPY 798
              
Sbjct: 665 QFI 667


>gi|90411666|ref|ZP_01219676.1| excinuclease ABC subunit B [Photobacterium profundum 3TCK]
 gi|90327556|gb|EAS43909.1| excinuclease ABC subunit B [Photobacterium profundum 3TCK]
          Length = 674

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/671 (52%), Positives = 472/671 (70%), Gaps = 9/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + + + P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI    RP  +
Sbjct: 3   KVFSLSSGFSPAGDQPTAINQLLEGLDAGLAHQTLLGVTGSGKTFTIANVIAEANRPTFI 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  MAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+++SVS IYG+G  +SY +M++ ++ GD + Q+++L  L + QY 
Sbjct: 123 RLSATKALLERRDVIIIASVSAIYGLGDPDSYLKMMLHVRRGDMLNQRDILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETI 377
           R D+   RG FRV G+ I++FP+  E  A R+ +F +++E IS F PLTG  +   +   
Sbjct: 183 RNDVSFERGHFRVRGEVIDVFPAESEHDAIRIELFDDEVECISVFDPLTGAILEKNLPRC 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK+EL +R  +L    +L+E QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPREKILEAIEKIKDELVVRRKQLMDNNKLVEEQRISQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+ QI  MYRGD  RK  L
Sbjct: 303 FCSGIENYSRYLSGRAEGEPPPTLFDYLPADGLLILDESHVTVSQIGAMYRGDRSRKENL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP++F+E+  L P TI VSATPG +E+EQ    I EQ++RPTGL+DP
Sbjct: 363 VEYGFRLPSALDNRPMKFDEFASLAPQTIYVSATPGKYEIEQSGNDIAEQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI +   +G R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ 
Sbjct: 423 IIEVRPVATQVDDLLSEIRIREAKGERVLVTTLTKRMSEDLTEYLAEHGVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EI+RDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEILRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+  + ILY D IT S++ AI ET RRREKQ  HN+K+ I PQ + +K+ ++++   
Sbjct: 543 AARNLEGRAILYGDKITGSMERAISETNRRREKQTIHNEKNGITPQGLNKKVGDILELGK 602

Query: 738 LEDAATTNISI--------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
               +  N +             ++LS ++ +  ++ L  +M+  A NL FE+AA  RD+
Sbjct: 603 PSSRSRMNKAAQLNRVAESKGTYVNLSPQQLEVEIQRLETEMYDLAQNLEFEKAAETRDK 662

Query: 790 IKRLKSSPYFQ 800
           I  L+      
Sbjct: 663 IHTLRQQFIMN 673


>gi|331266286|ref|YP_004325916.1| excinuclease ABC subunit B [Streptococcus oralis Uo5]
 gi|326682958|emb|CBZ00575.1| excinuclease ABC subunit B [Streptococcus oralis Uo5]
          Length = 662

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/655 (54%), Positives = 472/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FNLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG F V GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFSVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIIPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|121308596|dbj|BAF43690.1| excision nuclease subunit B [Photobacterium phosphoreum]
          Length = 675

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/670 (54%), Positives = 485/670 (72%), Gaps = 10/670 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + +DY P+GDQP AI QL+ G+ S    Q LLGVTGSGKTFT+A VI    RP ++
Sbjct: 3   KLFNLVSDYSPAGDQPTAIEQLMDGLDSGLAQQTLLGVTGSGKTFTIANVIAQANRPTLI 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E ++FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  MAPNKTLAAQLYGEMRDFFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ER D I+++SVS IYG+G  ESY +M++ ++ GD ++Q+++L  L + QYK
Sbjct: 123 RLSATKALMERRDVIIIASVSAIYGLGDPESYLKMMLHVRRGDVLDQRDILRRLAELQYK 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D    RGTFRV G+ I+IFP+  E  A R+ +F  ++E IS F PLTG  I RN+   
Sbjct: 183 RNDAVFERGTFRVRGEVIDIFPAESEKEAIRLELFDGEVEVISSFDPLTGAIIQRNLART 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK EL  R  +L    +L+E QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPREKILDAIEGIKLELTQRKQQLLDNNKLVEEQRISQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+ QI  M+RGD  RK  L
Sbjct: 303 FCSGIENYSRYLSGRTEGEPPPTLFDYLPADGLLIIDESHVTVSQIGAMFRGDRSRKENL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP++FEE+  L P TI VSATPG++E+E+  G I EQ++RPTGL+DP
Sbjct: 363 VEYGFRLPSALDNRPMKFEEFESLAPQTIYVSATPGNYEIEKSGGDIAEQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI++ + +  R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ 
Sbjct: 423 EIEVRPVATQVDDLLSEIHIRSAKQERVLVTTLTKRMSEDLTEYLTEHGVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GR
Sbjct: 483 TVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-PI 736
           AARN+  K ILY D IT S++ AI+ET RRREKQ+ +N +HNI PQ + +KI ++++   
Sbjct: 543 AARNIEGKAILYGDRITGSMERAINETQRRREKQIIYNLEHNIIPQKLNKKIGDLLELGA 602

Query: 737 LLEDAATTNISIDAQQLS--------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
               + + N + D  +++        L+ ++ +  ++ L KQM+  A NL FE+AA  RD
Sbjct: 603 PSGRSKSRNKAADLHKVAESKGTYSVLTPQQLELEIQRLEKQMYDFAQNLEFEQAADTRD 662

Query: 789 EIKRLKSSPY 798
           +I +L+    
Sbjct: 663 KIHQLRQQFI 672


>gi|323485835|ref|ZP_08091170.1| UvrABC system protein B [Clostridium symbiosum WAL-14163]
 gi|323400823|gb|EGA93186.1| UvrABC system protein B [Clostridium symbiosum WAL-14163]
          Length = 662

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/655 (53%), Positives = 471/655 (71%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI  L+KG     + + LLGVTGSGKTFTMA VI+ +Q+P +++A
Sbjct: 3   FKLHSEFKPTGDQPQAIEALVKGFKEGNQCETLLGVTGSGKTFTMANVIQQLQKPTLIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID++RH
Sbjct: 63  HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E++  L+  QY R 
Sbjct: 123 SATAALSERQDVIIVASVSCIYGLGSPIDYKEMVISLRPGMIKDRDEIIHKLIDIQYTRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD +EI+P++    A+RV  FG++++ I+E   LTG+    +  I I+
Sbjct: 183 DMDFKRGSFRVRGDVLEIYPAYSAGDAYRVEFFGDEVDRIAEIDTLTGEVKSQLGHIAIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV PR  +  A   I EELK+R+ E + E +LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 243 PASHYVIPREKMEQAATNILEELKVRVAEFKSEDKLLEAQRISERTNFDVEMMRETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PGEPP TL +Y PE+ L+ +DESH+T+PQ+ GMY GD  RK TL  +
Sbjct: 303 GIENYSRHLTGSLPGEPPCTLIDYFPEEFLIIIDESHITLPQVRGMYAGDRSRKQTLVNF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATP  +E E  + +  EQIIRPTGL+DPP+E
Sbjct: 363 GFRLPSALDNRPLNFSEFESKIDQIMFVSATPSKYEEEH-EMLRTEQIIRPTGLLDPPIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N   ++G ++L+T LTKRMAEDL++Y+ E  IRV+Y+HS++ TLE
Sbjct: 422 VRPVEGQIDDLVSEVNREVEKGFKVLITTLTKRMAEDLSDYMREVGIRVKYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQT+GRAAR
Sbjct: 482 RAEIIRDMRLNVFDVLVGINLLREGLDIPEISLVAILDADKEGFLRSETSLIQTVGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S++ AI ET RRR  Q  +N++H I P ++K+ + ++I      +
Sbjct: 542 NSEGHVIMYADNITDSMRAAIVETERRRRIQQAYNEEHGITPTTIKKAVRDLITISQAAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T  ++ D +  S+ KK+ +  +K L K+MH AA  LNFEEAA +RD +  +K 
Sbjct: 602 GITNEVTKDPE--SMDKKELEKLIKELMKKMHKAAAELNFEEAAALRDRMTEIKK 654


>gi|114331080|ref|YP_747302.1| excinuclease ABC subunit B [Nitrosomonas eutropha C91]
 gi|114308094|gb|ABI59337.1| Excinuclease ABC subunit B [Nitrosomonas eutropha C91]
          Length = 699

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/668 (54%), Positives = 483/668 (72%), Gaps = 4/668 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + +++   + P+GDQP AI +L+ GI S    Q LLGVTGSGKTFT+A +I  + RPAI+
Sbjct: 8   SPYKLNQAFQPAGDQPDAIRKLVDGIESGLSFQTLLGVTGSGKTFTIANMIAQLGRPAII 67

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++M
Sbjct: 68  MAPNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQM 127

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+SLLER D I+V+SVSCIYGIG    Y  MI+ ++  + + Q++++  L   QY+
Sbjct: 128 RLSATKSLLEREDTIIVASVSCIYGIGDPVDYHGMILHVREHEKITQRDIIQRLADMQYQ 187

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +    RGTFRV GD ++IFP+   + A R+S+F +++E I+ F PLTG   + V    
Sbjct: 188 RNEFEFARGTFRVRGDVLDIFPAENSETALRISLFDDEVESIALFDPLTGHTRQKVSRYT 247

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +SHYVTPR T   A++ IK EL  RL  L +  +L+EAQRLEQR  +DLEML   G 
Sbjct: 248 VYPSSHYVTPRSTTLRAIETIKTELAERLNHLHENHKLVEAQRLEQRTRFDLEMLNELGF 307

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+GR PG+PPPTL +Y+P ++L+ +DESHVT+PQ+ GMY+GD  RK  L 
Sbjct: 308 CKGIENYSRHLSGRLPGDPPPTLIDYLPGNALMIIDESHVTVPQVGGMYKGDRSRKENLV 367

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            YGFRLPS +DNRPLRFEE+  L P TI VSATP  +E++   G IVEQ++RPTGLVDP 
Sbjct: 368 AYGFRLPSALDNRPLRFEEFEKLMPQTIFVSATPADYEIQHS-GQIVEQVVRPTGLVDPV 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  E+++  +QG R L+T LTKRMAEDLT+Y  +  IRVRY+HS++ T
Sbjct: 427 IIIRPVATQVDDLMSEVSMRTKQGERTLITTLTKRMAEDLTDYFSDHGIRVRYLHSDIDT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQT+GRA
Sbjct: 487 VERVEIIRDLRLGKFDVLVGINLLREGLDIPEASLVGILDADKEGFLRSERSLIQTMGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           AR++N  VILYAD IT S++ AIDET RRR KQ   N++++I P+ V ++I ++ID +  
Sbjct: 547 ARHINGTVILYADRITNSMRRAIDETERRRNKQKLFNQQNDITPRGVSKRIKDLIDGVYD 606

Query: 739 EDAATTN---ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              A  +     I A   ++ + +    ++ L K M  AA ++ FE+AA+ RDEIK LK+
Sbjct: 607 SKDAAEHQKVAQIQAHYAAMDETQLAKEIQRLEKAMLTAAKSMEFEQAAQYRDEIKNLKN 666

Query: 796 SPYFQGLD 803
             +   +D
Sbjct: 667 KLFIGMID 674


>gi|322387685|ref|ZP_08061294.1| excision endonuclease subunit UvrB [Streptococcus infantis ATCC
           700779]
 gi|321141552|gb|EFX37048.1| excision endonuclease subunit UvrB [Streptococcus infantis ATCC
           700779]
          Length = 662

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/655 (54%), Positives = 473/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND I+V+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIIVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIEAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEHEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQKAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|198283103|ref|YP_002219424.1| excinuclease ABC subunit B [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667550|ref|YP_002425332.1| excinuclease ABC, B subunit [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198247624|gb|ACH83217.1| excinuclease ABC, B subunit [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519763|gb|ACK80349.1| excinuclease ABC, B subunit [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 675

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/667 (55%), Positives = 486/667 (72%), Gaps = 4/667 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F +++ + P GDQP AI  L+ G+ + E  Q LLGVTGSGKTFTMA VI    RPAI+
Sbjct: 3   KRFILESSFPPQGDQPEAIRLLVNGLAAGEYFQTLLGVTGSGKTFTMANVIAITHRPAII 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY+E + FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ I++M
Sbjct: 63  MAPNKTLAAQLYAEMRAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V++VS IYG+G   SY  MI+ L+   +++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERPDVIIVATVSAIYGLGDPASYHGMILHLRESSTMDQRAILKRLAEMQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R  + + RGTFRV GD I+I+P+  ED A R+ +FG+++E IS F PLTG+ I  +    
Sbjct: 183 RNPLEMKRGTFRVNGDVIDIWPAESEDEAVRIELFGDELERISLFDPLTGKTITRLPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYVTPR T+  A+  IK+EL+ RL +L +  +L+EAQRLEQR  +DLEM+   G 
Sbjct: 243 IYPKSHYVTPRETILAALDAIKDELRARLEDLRRANKLVEAQRLEQRTRFDLEMMAELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PG+ PPTL +Y+P+D+LLF+DESHVT+PQ  GMY+GD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRVPGQAPPTLMDYLPKDALLFMDESHVTVPQFGGMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL F E+  L P T+ +SATPG +ELE   G +VEQ++RPTGLVDP 
Sbjct: 363 EYGFRLPSALDNRPLTFPEFESLMPQTVFISATPGPYELEHS-GQVVEQVVRPTGLVDPA 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V+IR A+ QV+D+  EIN+  + G RIL+T LTKRMAEDLT+YL+E  I+ RY+HS+++T
Sbjct: 422 VDIRPAKGQVDDLISEINIVVRNGWRILVTTLTKRMAEDLTDYLHELGIKCRYLHSDIET 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLR G FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 482 VERVEIIRDLRAGVFDVLIGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN++ + ILYAD+ITKS+  AI ET RRREKQL+ N  H I P+ + + + ++I+ +  
Sbjct: 542 ARNLHGRAILYADSITKSMARAIAETDRRREKQLQFNAAHGITPRGIVKPVSDMIEGVYR 601

Query: 739 EDAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +      + +           +     +K L + M+  A NL FE+AA +RD+IK+L++
Sbjct: 602 RNVQPAAHAAEKNADYRVLRDPQAVAKKIKELEEAMYRHARNLEFEQAAALRDDIKKLET 661

Query: 796 SPYFQGL 802
                 L
Sbjct: 662 RLLGTDL 668


>gi|225377365|ref|ZP_03754586.1| hypothetical protein ROSEINA2194_03013 [Roseburia inulinivorans DSM
           16841]
 gi|225210790|gb|EEG93144.1| hypothetical protein ROSEINA2194_03013 [Roseburia inulinivorans DSM
           16841]
          Length = 667

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/656 (53%), Positives = 466/656 (71%), Gaps = 3/656 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++   Y P+GDQP AI +L++G     + + LLGVTGSGKTFTMA VI  + +P +++
Sbjct: 10  IFKLHAPYQPTGDQPQAIEELVRGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTLII 69

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYI K+S+INE+ID++R
Sbjct: 70  SHNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIAKDSAINEEIDKLR 129

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT +L+ER D IV++SVSCIYG+GS E Y  M+V L+ G   ++ E++ +LV  QY R
Sbjct: 130 LSATAALVERKDVIVIASVSCIYGLGSPEDYLGMMVSLRPGMEKDRDEVIRALVDIQYTR 189

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+   RGTFRV GD++EIFP++  D A RV  FG++I+ I+E   LTG+   ++E   +
Sbjct: 190 NDMDFHRGTFRVRGDTVEIFPANYSDTAIRVEFFGDEIDRITEIDVLTGEVKCSLEHFAV 249

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SHYV P   +  A   I+ E++ R+   + E +LLEAQR+ +R  +D+EML+ TG C
Sbjct: 250 FPASHYVVPMEKIQKACVNIEAEMEERVKYFKGEDKLLEAQRIAERTNFDIEMLKETGFC 309

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L G   G  P TL +Y  +D L+ VDESH+TIPQI GMY GD  RK+TL +
Sbjct: 310 SGIENYSRHLAGLPAGATPHTLMDYFKDDFLIIVDESHITIPQIGGMYAGDQSRKSTLVD 369

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS  DNRPL FEE+       + VSATP ++E E  + +  EQIIRPTGL+DP V
Sbjct: 370 YGFRLPSAKDNRPLNFEEFESKIDQMLFVSATPNTYEDEH-ELLRAEQIIRPTGLLDPEV 428

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R    Q++D+  E+N    +  ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ TL
Sbjct: 429 VVRPVEGQIDDLIGEVNKETAKKHKVLITTLTKRMAEDLTDYMKELGIRVKYLHSDIDTL 488

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIRDLRL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAA
Sbjct: 489 ERAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAA 548

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN    VI+YAD IT S++ AIDET RRR  Q E+NK+HNI P+++++ + ++I   + +
Sbjct: 549 RNSEGHVIMYADKITDSMRNAIDETERRRRIQQEYNKEHNITPKTIQKSVRDLI--SVSK 606

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             A   ++      S++K++    +  ++K+M  AA +LNFE AA  RD++ +LK+
Sbjct: 607 KVAQEELNFKKDPESMNKEELTKLIADIQKKMQRAAADLNFEAAAEYRDQMLQLKT 662


>gi|167565045|ref|ZP_02357961.1| excinuclease ABC subunit B [Burkholderia oklahomensis EO147]
          Length = 696

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/671 (54%), Positives = 481/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKT+TMA  I  + RPA
Sbjct: 21  DGSPFQLYQPYPPAGDQPTAITTLVEGVEDGLSFQTLLGVTGSGKTYTMANAIARLGRPA 80

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 81  IVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 140

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L++GD + Q+E+++ L+  Q
Sbjct: 141 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRLGDKIGQREVIARLIAMQ 200

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG+  + +  
Sbjct: 201 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVDLFDDEVDSLHLFDPLTGRVRQKIPR 260

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IKEEL+ RL    +EG+L+EAQRLEQR  +DLEML+  
Sbjct: 261 FTVYPSSHYVTPRETVMRAVETIKEELRERLEFFHREGKLVEAQRLEQRTRFDLEMLQEL 320

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 321 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYNGDRARKEN 380

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL+F E+       + VSATP  +E     G   EQ++RPTGLVD
Sbjct: 381 LVDYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYEQRVS-GQTAEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 440 PAIEVRPASTQVDDVLSEITERVKADERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYAD IT S++ AIDET RRR KQ+  N++  I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGKAILYADRITDSMRRAIDETERRRAKQIAFNEQMGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA+ RD++  L
Sbjct: 620 YNADEARAELKEAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAQTRDQLALL 679

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 680 RERVFGANVGD 690


>gi|83717423|ref|YP_440229.1| excinuclease ABC subunit B [Burkholderia thailandensis E264]
 gi|167616925|ref|ZP_02385556.1| excinuclease ABC subunit B [Burkholderia thailandensis Bt4]
 gi|257140855|ref|ZP_05589117.1| excinuclease ABC subunit B [Burkholderia thailandensis E264]
 gi|83651248|gb|ABC35312.1| excinuclease ABC, B subunit [Burkholderia thailandensis E264]
          Length = 696

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/671 (54%), Positives = 481/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y PSGDQP AIA L++G+      Q LLGVTGSGKT+TMA  I  + RPA
Sbjct: 21  EGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANTIARLGRPA 80

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 81  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 140

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+++ L+  Q
Sbjct: 141 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREVIARLIAMQ 200

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG+  + +  
Sbjct: 201 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTGRVRQKIPR 260

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +DLEML+  
Sbjct: 261 FTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRFDLEMLQEL 320

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 321 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYNGDRARKEN 380

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F E+       + VSATP  +E     G   EQ++RPTGLVD
Sbjct: 381 LVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYEQRVS-GQTAEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 440 PEIEVRPASTQVDDVLSEITERVKADERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N++  I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNQERGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA+ RD++  L
Sbjct: 620 YNADEARAELKEAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAQTRDQLALL 679

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 680 RERVFGANVGD 690


>gi|324992740|gb|EGC24660.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK405]
 gi|324994614|gb|EGC26527.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK678]
 gi|327462476|gb|EGF08800.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK1]
 gi|327474331|gb|EGF19737.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK408]
 gi|327489718|gb|EGF21508.1| excision endonuclease subunit UvrB [Streptococcus sanguinis SK1058]
          Length = 662

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/655 (54%), Positives = 472/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FELVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGRVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNEDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR  Q+ +N++H I PQ++K++I ++I       
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLISVTR--- 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           AA  +     +  SL+K++ K  +K L  QM  A   L+FE AA+IRD I  +K+
Sbjct: 606 AALPDKEETVEIESLNKQERKDMIKKLEGQMQEAVGLLDFELAAQIRDMILEIKA 660


>gi|148977620|ref|ZP_01814196.1| excinuclease ABC subunit B [Vibrionales bacterium SWAT-3]
 gi|145963135|gb|EDK28403.1| excinuclease ABC subunit B [Vibrionales bacterium SWAT-3]
          Length = 676

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/671 (53%), Positives = 481/671 (71%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + +DY PSGDQP AI QLL G+ S    Q LLGVTGSGKTFT+A VI   QRPAI+
Sbjct: 3   KLFDLVSDYSPSGDQPTAITQLLDGLDSGLAHQTLLGVTGSGKTFTLANVISESQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  +SY +M++ L  G+ ++Q+++L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPKSYLKMMLHLSRGEVMDQRDILRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RG FRV G+ I+IFP+  +  A R+ MF ++++ IS F PLTG    R++   
Sbjct: 183 RNDVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEVDCISIFDPLTGAVKQRDLPRF 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  +HYVTPR  +  A++ IK+EL+ R   L+   +LLE QR+ QR  +D+EM+   G
Sbjct: 243 TVYPKTHYVTPREKILEAIENIKDELRDRAQYLKDNNKLLEEQRISQRTQFDIEMMTELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GE PPTLF+Y+P+D LL +DESHVT+PQI  MY+GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRAEGEAPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRP++F+E+  + P TI VSATPG++E+E+  G I +Q++RPTGL+DP
Sbjct: 363 VEFGFRLPSALDNRPMKFDEFESIAPQTIFVSATPGNYEIEKSDGEIADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI + + +  R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ 
Sbjct: 423 IIEVRPVATQVDDLLSEIRIRSAKEERVLVTTLTKRMAEDLTEYLSEHGVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+  K ILY D+ITKS++ AIDET RRREKQ  +N++  I PQ++K  I ++++   
Sbjct: 543 AARNLEGKAILYGDSITKSMKKAIDETGRRREKQQAYNEEQGITPQALKRNIKDIMELGD 602

Query: 738 LEDAATTNISI----------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           +  +     S                 L+ ++    +  L   M+  A NL FE AA+ R
Sbjct: 603 ITKSKQKRQSKQVPLSKVAEPSESYAVLTPQQLDKEISKLEAAMYQHAQNLEFELAAQKR 662

Query: 788 DEIKRLKSSPY 798
           DEI++L+    
Sbjct: 663 DEIEQLRKQFI 673


>gi|298486485|ref|ZP_07004545.1| Excinuclease ABC subunit B [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158962|gb|EFI00023.1| Excinuclease ABC subunit B [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|320329228|gb|EFW85225.1| excinuclease ABC subunit B [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330888119|gb|EGH20780.1| excinuclease ABC subunit B [Pseudomonas syringae pv. mori str.
           301020]
          Length = 671

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/670 (54%), Positives = 485/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +
Sbjct: 1   MSEFQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQVKRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+I+P+  +  A RV +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLIEAMEGIKVELQERLEYLRTQNKLVEAQRLEQRTRFDLEMMLELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G +VEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR A TQV+D+  EI+       R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ 
Sbjct: 420 QIEIRPALTQVDDLLSEIHKRTALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S++ AI ET RRR+KQL  N +H I P+ V + + ++++   
Sbjct: 540 AARNLNGRAILYADRITGSMERAIGETERRRDKQLAFNLEHGITPKGVFKDVADIMEGAT 599

Query: 738 LEDAATTNISIDAQQLS---------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  + +      A+             S  +    ++ L ++M+  A +L FE AA++RD
Sbjct: 600 VPGSRSKKRKGMAKAAEENARYENELRSPSEINKRIRQLEEKMYQLARDLEFEAAAQMRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EIGKLRERLL 669


>gi|82702490|ref|YP_412056.1| excinuclease ABC subunit B [Nitrosospira multiformis ATCC 25196]
 gi|82410555|gb|ABB74664.1| Excinuclease ABC subunit B [Nitrosospira multiformis ATCC 25196]
          Length = 695

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/663 (54%), Positives = 488/663 (73%), Gaps = 4/663 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + +++   + P+GDQ +AI +L++GI      Q LLGVTGSGKTFTMA VI  + RPAI+
Sbjct: 8   SPYKLNQLFQPAGDQSSAIEKLVEGIEDGLAFQTLLGVTGSGKTFTMANVIARLGRPAII 67

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 68  MAPNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 127

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER+D I+V++VSCIYGIG    Y  MI+ L+  + + Q++ +  L + QY+
Sbjct: 128 RLSATKALLERDDAIIVATVSCIYGIGDPVDYHGMILHLREHEKITQRQAIQRLTEMQYE 187

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +    RGTFRV GD ++IFP+   + A RVS+F +++E ++ F PLTG+  R V    
Sbjct: 188 RNEFEFSRGTFRVRGDVLDIFPAESSETAVRVSLFDDEVESMTLFDPLTGRTSRKVSRYT 247

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +SHYVTPR T   A++ IK EL+ R+    +  +L+E QR+EQR  +DLEML   G 
Sbjct: 248 VYPSSHYVTPRSTTLRAIETIKTELRERMDFFHQHNKLVELQRIEQRTRFDLEMLNELGF 307

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+G+ PGEPPPTL +Y+P  +L+ +DESHVT+PQ+ GMY+GD  RK  L 
Sbjct: 308 CKGIENYSRHLSGKKPGEPPPTLMDYLPPRTLMVIDESHVTVPQVGGMYKGDRARKENLV 367

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPLRF+E+  + P T+ VSATP  +E     G +VEQ++RPTGLVDP 
Sbjct: 368 DYGFRLPSALDNRPLRFDEFRKIMPQTVFVSATPAEFEKIHS-GQVVEQVVRPTGLVDPQ 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R A TQV+D+  E+ L   +  R+L+T LTKRMAEDLT+Y  +  IRVRY+HS++ T
Sbjct: 427 IEVRPASTQVDDLMSEVRLRTAKDERVLVTTLTKRMAEDLTDYFADHGIRVRYLHSDIDT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EI+RDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 487 VERVEIVRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           AR++N   +LYAD IT+S++LA+DET RRR KQ+  N++H I P+SV +++ ++ID +  
Sbjct: 547 ARHINGTALLYADRITESMRLAMDETERRRNKQILFNQEHGITPRSVHKRVKDLIDGVYS 606

Query: 739 EDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            + A   +      A+  ++S+ +    +KSL KQMH AA NL FE+AA  RDE+K+LK+
Sbjct: 607 METAQQQLKAAQTQARYEAMSETQLAKEIKSLEKQMHEAAKNLEFEKAAEYRDELKKLKN 666

Query: 796 SPY 798
             +
Sbjct: 667 KLF 669


>gi|146310929|ref|YP_001176003.1| excinuclease ABC subunit B [Enterobacter sp. 638]
 gi|189037969|sp|A4W8C2|UVRB_ENT38 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|145317805|gb|ABP59952.1| Excinuclease ABC subunit B [Enterobacter sp. 638]
          Length = 673

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/665 (55%), Positives = 472/665 (70%), Gaps = 8/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KMFKLNSAFRPSGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTVANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTNGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTG     ++   
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDLALRVELFDEEVERLSLFDPLTGHVDSVIQRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  AM+ IK EL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 VYPKTHYVTPRERIVQAMEDIKVELAERRKVLLENNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGEDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVGTQVDDLLSEIRARAIINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN+N K ILY D IT S+  AI ET RRREKQ ++N  + I PQ + +K+++++     
Sbjct: 543 ARNINGKAILYGDRITASMAKAISETERRREKQHQYNLDNGIVPQGLNKKVVDILALGQG 602

Query: 735 ----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                      + + +  D  +L L+ K  +  +  L   M   A NL FEEAA++RD++
Sbjct: 603 LAKTKAKGRGKSRSPVEADPVELVLTPKALQQKIHELEGLMMQHAQNLEFEEAAQVRDQL 662

Query: 791 KRLKS 795
            +L+ 
Sbjct: 663 HQLRQ 667


>gi|172061170|ref|YP_001808822.1| excinuclease ABC subunit B [Burkholderia ambifaria MC40-6]
 gi|171993687|gb|ACB64606.1| excinuclease ABC, B subunit [Burkholderia ambifaria MC40-6]
          Length = 696

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/671 (54%), Positives = 484/671 (72%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 21  EGSPFQLYQPYPPAGDQPTAIETLVEGVGDGLAFQTLLGVTGSGKTFTMANTIARLGRPA 80

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 81  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 140

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y +MI+ L+ GD + Q+++++ L+  Q
Sbjct: 141 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHKMILTLRTGDKLGQRDVIARLIAMQ 200

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 201 YSRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKIPR 260

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IKEEL+ RL    ++G+L+EAQRLEQR  +DLEML+  
Sbjct: 261 FTVYPSSHYVTPRDTVMRAVETIKEELRERLEFFHRDGKLVEAQRLEQRTRFDLEMLQEL 320

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 321 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 380

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ++RPTGLVD
Sbjct: 381 LVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A +QV+DV  EIN     G R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 440 PEIEVRPASSQVDDVLTEINARVNAGERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYADT+T+S++ AI ET RRR KQ+ HN+K  I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAHNEKMGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA  RD++  L
Sbjct: 620 YNADDARAELKEAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAATRDQLALL 679

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 680 RERVFGANVGD 690


>gi|330968328|gb|EGH68588.1| excinuclease ABC subunit B [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 671

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/670 (54%), Positives = 486/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +
Sbjct: 1   MSEFQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLRMVLHVDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+I+P+  +  A R+ +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLVEAMEGIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G IVEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR A TQV+D+  EI+  A    R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ 
Sbjct: 420 QIEIRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S++ AI ET RRR+KQ+  N +H I P+ V + + ++++   
Sbjct: 540 AARNLNGRAILYADRITGSMERAIGETERRRDKQIAFNLEHGITPKGVFKDVADIMEGAT 599

Query: 738 LEDAATTNISIDAQQLS---------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  + +      A+             S  +    ++ L ++M+  A +L FE AA++RD
Sbjct: 600 VPGSRSKKRKGMAKAAEENARYENELRSPSEINKRIRQLEEKMYQLARDLEFEAAAQMRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EIGKLRERLL 669


>gi|307704944|ref|ZP_07641835.1| excinuclease ABC, B subunit [Streptococcus mitis SK597]
 gi|307621558|gb|EFO00604.1| excinuclease ABC, B subunit [Streptococcus mitis SK597]
          Length = 662

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/655 (53%), Positives = 473/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D ++ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFMIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYETEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR LRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRGLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|319762893|ref|YP_004126830.1| excinuclease abc, b subunit [Alicycliphilus denitrificans BC]
 gi|330824972|ref|YP_004388275.1| excinuclease ABC subunit B [Alicycliphilus denitrificans K601]
 gi|317117454|gb|ADU99942.1| excinuclease ABC, B subunit [Alicycliphilus denitrificans BC]
 gi|329310344|gb|AEB84759.1| excinuclease ABC, B subunit [Alicycliphilus denitrificans K601]
          Length = 695

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/672 (55%), Positives = 490/672 (72%), Gaps = 7/672 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   Y P+GDQP AIA+L++G+   E  Q LLGVTGSGKTFTMA VI  + RPAIV
Sbjct: 21  SPFELFQPYPPAGDQPEAIAKLVEGVRDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIV 80

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++M
Sbjct: 81  FAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQM 140

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R S T+SLLER D ++V++VS IYGIG+ ESY +M++ L+ GD + Q+E+++ L++ QY+
Sbjct: 141 RLSCTKSLLERRDVVIVATVSAIYGIGNPESYHRMVMTLRAGDRMGQREVIAQLIRMQYQ 200

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RG FRV GD+I++FP+   ++A R+ +F +++E +  F PLTG+  + +    
Sbjct: 201 RNDQDFSRGKFRVRGDTIDVFPAEHSELAVRIELFDDEVESLQLFDPLTGRVQQKIPRFT 260

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +SHYVTPR  +  A++ IKEEL+ RL    +EG+L+EAQRLEQR  +DLEML   G 
Sbjct: 261 VYPSSHYVTPRDVVLGAVETIKEELRERLEFFAREGKLVEAQRLEQRTRFDLEMLSEVGH 320

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENY+R+L+G  PGEPP TL +Y+P D+L+F+DESH  I Q++ MY GD  RK TL 
Sbjct: 321 CKGIENYTRHLSGAAPGEPPSTLTDYLPPDALMFLDESHQMIGQLNAMYNGDRSRKTTLV 380

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+       + VSATP  +E E   G IV+Q++RPTGLVDP 
Sbjct: 381 EYGFRLPSALDNRPLKFEEFEQRMRQVVFVSATPADYEKEHS-GQIVDQVVRPTGLVDPE 439

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R A TQV+DV  EI L  ++  R+L+T LTKRMAE LT+YL +  ++VRY+HS+V T
Sbjct: 440 VEVRPASTQVDDVLQEIRLRVEKNERVLITTLTKRMAEQLTDYLADNGVKVRYLHSDVDT 499

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 500 VERVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA 559

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN K ILYAD +T S++ AI ET RRR KQ+ HN+   I P+S+ +++ ++ID +  
Sbjct: 560 ARNVNGKAILYADRVTDSMKKAIGETERRRAKQIAHNEALGITPRSIVKQVRDLIDGVYS 619

Query: 739 EDAATTNISID------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           E A    + ++      A+   +S+K     +K L K+M   A NL FE+AAR+RDE+ R
Sbjct: 620 EKAGQEALRLEQEAARHAELEEMSEKDIAREIKRLEKRMLEHARNLEFEQAARVRDELAR 679

Query: 793 LKSSPYFQGLDD 804
           LK   +     D
Sbjct: 680 LKDRVFGAHGGD 691


>gi|119469464|ref|ZP_01612368.1| excinuclease ABC subunit B [Alteromonadales bacterium TW-7]
 gi|119446999|gb|EAW28269.1| excinuclease ABC subunit B [Alteromonadales bacterium TW-7]
          Length = 664

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/659 (54%), Positives = 474/659 (71%), Gaps = 1/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++ + P+GDQP AI QL +G+ +    Q LLG TG+GKTFTMA +I  + RP I+MA
Sbjct: 5   FQLKSQFKPAGDQPTAIKQLCEGLEAGLAHQTLLGATGTGKTFTMANIISDLNRPTIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYV  +DT+IEK++SINE I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPKNAVEYFVSYYDYYQPEAYVVSSDTFIEKDASINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  +SY +M++ LK+G+ V+Q+++L  L + QY R 
Sbjct: 125 SATKALLERRDTIIVASVSAIYGLGDPQSYMKMMLLLKVGEKVDQRDMLRRLAEIQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGT+RV G+ ++IFP+  E  A RV MF ++IE +S F PLTG   +++    IY
Sbjct: 185 DIEFSRGTYRVRGEVLDIFPAESETYAVRVEMFDDEIERLSIFDPLTGAVEKHIVRATIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ IK ELK R  +L    +L+E QR+ QR  YD+EM+   G C 
Sbjct: 245 PKTHYVTPREKILGAIENIKIELKDRRAQLLSANKLVEEQRIAQRTQYDIEMMTELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PG+PPPTL +Y+P+D+L+ +DESHVT+ QI  MY+GD  RK  L EY
Sbjct: 305 GIENYSRYLSGRTPGDPPPTLLDYLPDDALMIIDESHVTVSQIGAMYKGDRSRKENLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS MDNRPLRFEE+  + P TI VSATPG +E+E+  G + EQIIRPTGL+DP +E
Sbjct: 365 GFRMPSAMDNRPLRFEEFEAIAPQTIYVSATPGDFEMERSGGEVAEQIIRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI    ++G R+L+T LTKRM+EDLT+YL E  ++VRY+HS++ T+E
Sbjct: 425 VRPVGDQVDDLLSEIYHCVEKGERVLVTTLTKRMSEDLTDYLSEHGVKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRAGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSTRSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-PILLE 739
           +++ + ILY D +TKS+  AIDET+RRRE Q ++N  + I P+++ +KI++V+D      
Sbjct: 545 HLDGRAILYGDKVTKSMAKAIDETSRRREIQHQYNIDNGIEPRALAKKILDVMDVGEEAG 604

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
                 +     +  LS K+    +K L  +MH  A NL FE+A  +RDEI  L+    
Sbjct: 605 PKDNLQLIRKESKKVLSAKEIATQIKQLETKMHAYASNLEFEKAGSVRDEIHELQQQLI 663


>gi|332160999|ref|YP_004297576.1| excinuclease ABC subunit B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604871|emb|CBY26369.1| excinuclease ABC subunit B [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665229|gb|ADZ41873.1| excinuclease ABC subunit B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863978|emb|CBX74060.1| UvrABC system protein B [Yersinia enterocolitica W22703]
          Length = 670

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/663 (54%), Positives = 470/663 (70%), Gaps = 5/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLSELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ    V    +Y
Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +L+E QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEDIKIELAERRKVLLANNKLIEEQRITQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPSDGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDVIDQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLEEHGARVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-----P 735
           N+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +KI +++       
Sbjct: 545 NLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLGQPST 604

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                     ++      SL+ K     ++ L  +M+  A NL FE+AA +RD++ +L+ 
Sbjct: 605 RGKGKGRGGKVADTNNYQSLAPKALDQKIRELEAKMYTHAQNLEFEQAAELRDQVHQLRQ 664

Query: 796 SPY 798
              
Sbjct: 665 QFI 667


>gi|118581885|ref|YP_903135.1| excinuclease ABC subunit B [Pelobacter propionicus DSM 2379]
 gi|118504595|gb|ABL01078.1| Excinuclease ABC subunit B [Pelobacter propionicus DSM 2379]
          Length = 701

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/695 (51%), Positives = 479/695 (68%), Gaps = 37/695 (5%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F ++TDY P GDQPAAIA+L++GI   ++ Q+LLGVTGSGKTFT+A VI    RPA+
Sbjct: 1   MSIFTLKTDYTPRGDQPAAIAELVEGIERGDQHQVLLGVTGSGKTFTVANVIARTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++APNK LAAQLY+E K  FP NAVE+FVSYYDYYQPEAY+P +DT+IEK+S+IN++ID+
Sbjct: 61  LLAPNKTLAAQLYAEMKELFPDNAVEFFVSYYDYYQPEAYLPSSDTFIEKDSAINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSATRSLL R D I+V+SVSCIYGIGS E+Y+ + +  + G+   +  LL  LV  QY
Sbjct: 121 MRHSATRSLLTRRDVIIVASVSCIYGIGSPEAYASLHIFFRQGEEYGRDTLLQKLVAIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D    RGTFRV GD +E+FP++  D A R+  FG+++E ISE  PL G  ++ +   
Sbjct: 181 ERNDTDFHRGTFRVRGDVVEVFPAYDSDKALRIEFFGDEVESISEIDPLRGAVLQRLTKC 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SHYV  R TL  A++ I+ +L  R+    +   LLEAQR+EQR  +D+EM+E  G
Sbjct: 241 TIYPASHYVATRETLERAVEQIRVDLGERIRYFRENNMLLEAQRIEQRTFFDIEMMEEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSRY  GR  GEPP TL +Y P+D +L+VDESH++IPQ+ GMYRGD  RK TL
Sbjct: 301 FCQGIENYSRYFDGRETGEPPYTLIDYFPDDFVLYVDESHISIPQVGGMYRGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLP+ +DNRPL F E+       + VSATP  +ELE+  G+ VEQ+IRPTGL+DP
Sbjct: 361 VNYGFRLPAALDNRPLNFREFEARVHQAVYVSATPADYELEKSNGVFVEQVIRPTGLLDP 420

Query: 558 PVEIRSAR-----------------------------------TQVEDVYDEINLAAQQG 582
            +++R                                       QV+D+  E+     +G
Sbjct: 421 VIQVRPVTAGRQIPPSPPLKKGDLPSGDDEYPPFEKGGAGGMYGQVDDLLHEVRQTVAKG 480

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R+L+T LTKRMAE+LT Y  E  +R+RY+HS++ T+ER++I+RDLR+G+FDVLVGINLL
Sbjct: 481 ERVLVTTLTKRMAEELTSYYGELGVRIRYLHSDIVTIERMQILRDLRMGEFDVLVGINLL 540

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           REGLD+PE  LVAILDADKEGFLRS+ SLIQT GRAARN N +V++YAD+IT+S+Q  ID
Sbjct: 541 REGLDLPEVSLVAILDADKEGFLRSERSLIQTCGRAARNANGRVLMYADSITRSMQACID 600

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID--AQQLSLSKKKG 760
           ET RRREKQL  N++H I P++V++ +  ++  I  +D  T  +S     ++  ++ K  
Sbjct: 601 ETQRRREKQLAWNQEHGITPETVRKSMQTILGSIEEKDYYTPKVSAAETPEEYGVAPKDI 660

Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              +K LRK+M  AA  L+FE+AA +RD ++ L+ 
Sbjct: 661 PKLVKKLRKEMLGAAKQLDFEKAAELRDRVRTLEE 695


>gi|91788049|ref|YP_549001.1| excinuclease ABC subunit B [Polaromonas sp. JS666]
 gi|91697274|gb|ABE44103.1| Excinuclease ABC subunit B [Polaromonas sp. JS666]
          Length = 706

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/694 (53%), Positives = 489/694 (70%), Gaps = 4/694 (0%)

Query: 115 PLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLL 174
           P +       P  S +    S   + F++   Y P+GDQP AIAQL++G++  E  Q LL
Sbjct: 2   PEVTEVITDLPDLSPAGEFVSFPDSPFELFMPYPPAGDQPTAIAQLVEGVNDGEVFQTLL 61

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           GVTGSGKTFTMA VI  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQP
Sbjct: 62  GVTGSGKTFTMANVIARLGRPAIVFAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQP 121

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           EAYVP+ D +IEK+S+INE I++MR SAT+S+LER D I+V +VS IYGIG+ E Y+QM 
Sbjct: 122 EAYVPQRDLFIEKDSAINEHIEQMRLSATKSVLERRDTIIVGTVSAIYGIGAPEDYTQMR 181

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
              + GD + Q+++++ L++ QY R +    RGTFRV GD I+IFP+   ++A R+ +F 
Sbjct: 182 FIARTGDKMGQRDVIARLIRMQYTRNEQDFARGTFRVRGDVIDIFPAEHSELAIRIELFD 241

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F PLTG+  + V    +Y  SHYVTPR  +  A++ IK EL  R+ +   +G
Sbjct: 242 DEIESLQLFDPLTGRIRQKVPRFVVYPKSHYVTPRDKVMAAVETIKLELSERVGQFVADG 301

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           +L+EAQR+EQR  +DLEML   G C+ IENY+R+L+G  PG  P TL +Y+P+D+++F+D
Sbjct: 302 KLVEAQRIEQRTRFDLEMLSEIGHCKGIENYTRHLSGSAPGSAPSTLCDYLPKDAVMFLD 361

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           ESHV I Q++ MY GD  RK TL EYGFRLPS +DNRPL+F+E+       I VSATP +
Sbjct: 362 ESHVMIGQLNAMYNGDRARKTTLVEYGFRLPSALDNRPLKFDEFEAKMRQAIFVSATPAA 421

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           +E E   G +VEQ++RPTGLVDP VE+R A  QV+DV  EI +   +  R+L+T LTKRM
Sbjct: 422 YEQEHA-GQVVEQVVRPTGLVDPQVEVRPATHQVDDVLQEIRIRVDRNERVLITTLTKRM 480

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE LT+YL +  ++VRY+HS+V T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LV
Sbjct: 481 AEQLTDYLGDNGVKVRYLHSDVDTVERVEILRDLRLGAFDVLVGINLLREGLDIPEVSLV 540

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
           AILDADKEGFLRS+ SLIQTIGRAARN+N + ILYAD IT S++ A+DET RRR KQ+  
Sbjct: 541 AILDADKEGFLRSERSLIQTIGRAARNLNGRAILYADRITDSMKKAMDETERRRNKQIAF 600

Query: 715 NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ---LSLSKKKGKAHLKSLRKQM 771
           N +H I P+S+ ++I ++ID +  E +      ++ Q+     +S+K     +K L KQM
Sbjct: 601 NLEHGITPRSIVKRIKDLIDGVYSEKSGKEAEKLEMQKALVEDMSEKDIAREIKRLEKQM 660

Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
              A NL FE+AARIRD++  LK   +     D+
Sbjct: 661 VEHARNLEFEKAARIRDQLHTLKEQAFGAPGADN 694


>gi|126669089|ref|ZP_01740020.1| excinuclease ABC subunit B [Marinobacter sp. ELB17]
 gi|126626444|gb|EAZ97110.1| excinuclease ABC subunit B [Marinobacter sp. ELB17]
          Length = 689

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/685 (54%), Positives = 487/685 (71%), Gaps = 13/685 (1%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
            ++   +     FQ+ + Y P+GDQP AIA L+ GI S    Q LLGVTGSGKTFT+A V
Sbjct: 6   ENVEQPNVGEGAFQVHSPYVPAGDQPKAIAALVDGIESGLAHQTLLGVTGSGKTFTIANV 65

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I+ +QRP IVMA NK LAAQLY EF+ FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+
Sbjct: 66  IQQIQRPTIVMAHNKTLAAQLYGEFREFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKD 125

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           +SINE I++MR SAT++LLER D I+V++VS IYG+G  +SY +M++ L  GD ++Q+ +
Sbjct: 126 ASINEHIEQMRLSATKALLERPDAIIVATVSAIYGLGDPQSYKKMMLHLDRGDQLDQRLI 185

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  L + QY R DI   R  +RV GD I++FP+  E  A R+ +F + +E +S F PLTG
Sbjct: 186 LKRLAELQYTRNDIEFHRANYRVRGDVIDVFPAESEKEAIRIELFDDVVENLSFFDPLTG 245

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + +R V  + +Y  SHYVTPR  +  A+++I+ EL  RL +L    RL+EAQRLE+R  Y
Sbjct: 246 EMLRRVPRVTVYPKSHYVTPRQNVLDAIEHIRVELDQRLTQLRDNNRLVEAQRLEERTRY 305

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM++  G C  IENYSRYL+GR PGEPPPTLF+Y+P ++LL VDESH +IPQI  MY+
Sbjct: 306 DMEMMQELGYCNGIENYSRYLSGRPPGEPPPTLFDYLPANALLVVDESHASIPQIGAMYK 365

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL EYGFRLPS +DNRP+RFEEW  + P  I VSATPG++E E  QG +VEQ+
Sbjct: 366 GDRSRKETLVEYGFRLPSALDNRPMRFEEWERIAPQMIFVSATPGNYEAEH-QGQVVEQV 424

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGL+DP +E+R A TQV+D+  +I+       R+L+T LTKRM+EDLT++L E +IR
Sbjct: 425 VRPTGLLDPEIEVRPASTQVDDLISQIHARVAVNERVLVTTLTKRMSEDLTDFLMEHDIR 484

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ T+ER+EIIRDLR G+FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+
Sbjct: 485 VRYLHSDIDTVERVEIIRDLRRGEFDVLVGINLLREGLDMPEVSLVTILDADKEGFLRSE 544

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARN+N K ILY D IT S+Q AIDET RRR KQ EHN+ H I PQ + +K
Sbjct: 545 RSLIQTIGRAARNINGKAILYGDRITGSMQRAIDETARRRAKQAEHNEIHGITPQGLTKK 604

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS------------LSKKKGKAHLKSLRKQMHLAAD 776
           I +V++       +        QQ +             S +     +  L  +M+ AA 
Sbjct: 605 IADVMEGASAGGRSRNKSKRPGQQAAEEAEHYRTLVGNKSPQAVLKEMSRLEDEMYKAAA 664

Query: 777 NLNFEEAARIRDEIKRLKSSPYFQG 801
           +L+FE AAR+RD+I  LK +    G
Sbjct: 665 DLDFETAARLRDDISELKEASLRTG 689


>gi|331086213|ref|ZP_08335295.1| UvrABC system protein B [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406372|gb|EGG85886.1| UvrABC system protein B [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 663

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/661 (53%), Positives = 475/661 (71%), Gaps = 3/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI QL+KG     + Q LLGVTGSGKTFTMA VI+ + +P +
Sbjct: 1   MEHFELVSEYAPTGDQPQAIEQLVKGFQEGNQCQTLLGVTGSGKTFTMANVIQQLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYI K+S+IN++ID+
Sbjct: 61  IIAHNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSAINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E+++ L++ QY
Sbjct: 121 LRHSATAALSERRDVIIVASVSCIYGLGSPIDYQEMVISLRPGMIKDRDEVIAKLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD +EIFP+  ED A R   FG++IE I+E   LTG+    +  I
Sbjct: 181 DRNDMDFKRGTFRVRGDVLEIFPAISEDYAIRAEFFGDEIERITEIDLLTGEIKSELSHI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV  + +++ A K I+EEL+ ++   + E +LLEAQR+ +R  +D+EM+  TG
Sbjct: 241 AIFPASHYVVSKESIDRATKAIEEELEEQVRYFKSEDKLLEAQRIAERTNFDIEMMRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTG  PGE P TL +Y P+D ++ +DESH TIPQI GMY GD  RK TL
Sbjct: 301 FCSGIENYSRHLTGLKPGEAPHTLIDYFPDDFIIMIDESHKTIPQIGGMYAGDRSRKKTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL FEE+       + VSATPG +E E+ + +  EQ+IRPTGL+DP
Sbjct: 361 VDYGFRLPSALDNRPLNFEEFESKVNQMLFVSATPGEYE-ERNELLRAEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++D+  E+N    +  ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ 
Sbjct: 420 EVEVRPVEGQIDDLVGEVNKEIAKKNKVLITTLTKRMAEDLTDYMRELGIRVKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRD+R+  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERTEIIRDMRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YADT+T S++ AI+ET RRR+ Q+E+N+KH I P+++ + + ++I    
Sbjct: 540 AARNAEGHVIMYADTMTDSMKAAIEETKRRRQVQMEYNEKHGITPKTIHKSVRDLISISK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
              +    +  D +  S+S+K+ +A +K + K+M  AA  LNFE AA +RD++   K   
Sbjct: 600 KVSSEEMKLEKDPE--SMSEKELQAAIKDINKKMKKAAAELNFEVAAELRDQLIEFKKKL 657

Query: 798 Y 798
            
Sbjct: 658 L 658


>gi|312866754|ref|ZP_07726968.1| excinuclease ABC, B subunit [Streptococcus parasanguinis F0405]
 gi|311097835|gb|EFQ56065.1| excinuclease ABC, B subunit [Streptococcus parasanguinis F0405]
          Length = 662

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/655 (54%), Positives = 476/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++IE I E   LTGQ + +V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIERIREIEALTGQVLGDVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLKVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINARVERGERTFVTTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQKAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL++++ K  +K L+ QM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDITSLNRQERKELVKKLQGQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|325204328|gb|ADY99781.1| excinuclease ABC, B subunit [Neisseria meningitidis M01-240355]
          Length = 672

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/665 (53%), Positives = 482/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A   IKEEL+ R+    KE R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACDSIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +  +      ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDSGKSRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIK 667

Query: 795 SSPYF 799
            +  F
Sbjct: 668 ENLLF 672


>gi|325136165|gb|EGC58773.1| excinuclease ABC, B subunit [Neisseria meningitidis M0579]
          Length = 716

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/665 (53%), Positives = 481/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 50  SPFKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 109

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 110 MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 169

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 170 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 229

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 230 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 289

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G 
Sbjct: 290 VFPSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGF 349

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 350 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 409

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 410 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 468

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 469 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 528

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 529 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 588

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 589 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 648

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 649 EEDSGKGRRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRNIK 708

Query: 795 SSPYF 799
            S  F
Sbjct: 709 ESLLF 713


>gi|238893826|ref|YP_002918560.1| excinuclease ABC subunit B [Klebsiella pneumoniae NTUH-K2044]
 gi|238546142|dbj|BAH62493.1| excinuclease ABC subunit B [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 673

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/663 (55%), Positives = 470/663 (70%), Gaps = 8/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I++FP+  +D+A R+ +F  ++E +S F PLTG     V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG++EL++  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI L      R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           NVN K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++       
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQLGQGLA 604

Query: 735 --PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                    A          + ++ K  +  +  L  QM   A NL FEEAA+IRD++ +
Sbjct: 605 KTKAKGRGKAKVVEPAGLSAVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQ 664

Query: 793 LKS 795
           L+ 
Sbjct: 665 LRE 667


>gi|170702361|ref|ZP_02893253.1| excinuclease ABC, B subunit [Burkholderia ambifaria IOP40-10]
 gi|170132720|gb|EDT01156.1| excinuclease ABC, B subunit [Burkholderia ambifaria IOP40-10]
          Length = 696

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/671 (54%), Positives = 484/671 (72%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 21  EGSPFQLYQPYPPAGDQPTAIETLVEGVGDGLAFQTLLGVTGSGKTFTMANTIARLGRPA 80

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 81  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 140

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y +MI+ L+ GD + Q+++++ L+  Q
Sbjct: 141 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHKMILTLRTGDKLGQRDVIARLIAMQ 200

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 201 YSRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVETLQLFDPLTGRVRQKIPR 260

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +DLEML+  
Sbjct: 261 FTVYPSSHYVTPRDTVMRAVETIKDELRERLELFHRDGKLVEAQRLEQRTRFDLEMLQEL 320

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 321 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 380

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ++RPTGLVD
Sbjct: 381 LVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A +QV+DV  EIN     G R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 440 PEIEVRPASSQVDDVLTEINARVNAGERVLVTVLTKRMAEQLTEFLADHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYADT+T+S++ AI ET RRR KQ+ HN+K  I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGKAILYADTMTESMKRAIGETERRRAKQIAHNEKMGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA  RD++  L
Sbjct: 620 YNADDARAELKEAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAATRDQLALL 679

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 680 RERVFGANVGD 690


>gi|172058423|ref|YP_001814883.1| excinuclease ABC, B subunit [Exiguobacterium sibiricum 255-15]
 gi|171990944|gb|ACB61866.1| excinuclease ABC, B subunit [Exiguobacterium sibiricum 255-15]
          Length = 655

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/657 (53%), Positives = 464/657 (70%), Gaps = 4/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P GDQP AI +L+ G+ + E+ Q LLG TG+GKTFT++ VI+ +++P +V+A
Sbjct: 3   FELVSPFEPGGDQPEAIKKLIAGVKNGERHQTLLGATGTGKTFTVSNVIKEIKKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVS+YDYYQPEAYVP TDT+IEK+SSIN++ID++RH
Sbjct: 63  HNKTLAGQLYSEFKEFFPNNAVEYFVSFYDYYQPEAYVPSTDTFIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D ++V+SVSCIYG+G+ E Y+  ++ L++G+ + + E+L  L+  QY+R 
Sbjct: 123 SATASLFEREDVLIVASVSCIYGLGNPEEYNNHVLSLRVGNEMGRNEMLRRLIDIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++   R+  FG++IE I +  PLTG+ I + E I I+
Sbjct: 183 DIDFQRGRFRVRGDVVEIFPASRDEQCVRIEFFGDEIERIRDMDPLTGEIIADREHISIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A+  I+ EL+ +L ++ ++G LLEAQRLEQR  YDLEM+   G C 
Sbjct: 243 PASHFVTGDTRLQKAITNIEAELETQLAKMREDGMLLEAQRLEQRTNYDLEMMREMGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L    PG  P TL +Y P+D LL  DESHVT+PQI GMY GD  RK  L ++
Sbjct: 303 GIENYSRHLNLMPPGSTPYTLIDYFPKDFLLVADESHVTLPQIRGMYNGDQARKQVLVDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRFEE+       I +SATPG +E+E  +  +VEQIIRPTGLVDP +E
Sbjct: 363 GFRLPSAKDNRPLRFEEFEEKVSQAIYISATPGPYEIEHTKE-MVEQIIRPTGLVDPTIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I     Q++ + D I     +  R+L+T LTK+M+EDLT+YL E  ++V YMHSE+KTLE
Sbjct: 422 IHPITGQIDYLMDNIRERVAKNERVLVTTLTKKMSEDLTDYLKEHGVKVNYMHSEIKTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 482 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VIL+AD +T S+Q AIDET RRR  QL  NK+H I P+++++ +  VI   +  D
Sbjct: 542 NSEGHVILFADKMTDSMQRAIDETERRRNIQLAFNKEHGITPKTIQKDVRGVISTTIESD 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                +    +   L K + +  L+ L ++M  AA ++ FE AA +RD I  LK+  
Sbjct: 602 DTVEKLE---KFNKLKKPERETLLEQLDQEMRQAAKDMQFERAAELRDLILELKAGA 655


>gi|320324863|gb|EFW80935.1| excinuclease ABC subunit B [Pseudomonas syringae pv. glycinea str.
           B076]
          Length = 671

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/670 (54%), Positives = 485/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +
Sbjct: 1   MSEFQLVTRFEPAGDQPEAIRQLVEGIDTGLAHQTLLGVTGSGKTFSIANVISQVKRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+I+P+  +  A RV +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLIEAMEGIKVELQERLEYLRTQNKLVEAQRLEQRTRFDLEMMLELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G +VEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR A TQV+D+  EI+       R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ 
Sbjct: 420 QIEIRPALTQVDDLLSEIHKRTALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S++ AI ET RRR+KQL  N +H I P+ V + + ++++   
Sbjct: 540 AARNLNGRAILYADRITGSMERAIGETERRRDKQLAFNLEHGITPKGVFKDVADIMEGAT 599

Query: 738 LEDAATTNISIDAQQLS---------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  + +      A+             S  +    ++ L ++M+  A +L FE AA++RD
Sbjct: 600 VPGSRSKKRKGMAKAAEENARYENELRSPSEINKRIRQLEEKMYQLARDLEFEAAAQMRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EIGKLRERLL 669


>gi|254507800|ref|ZP_05119931.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus 16]
 gi|219549325|gb|EED26319.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus 16]
          Length = 676

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/671 (54%), Positives = 488/671 (72%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +DY PSGDQP AI QLL+G+ S    Q LLGVTGSGKTFT+A VI   QRPAI+
Sbjct: 3   KVFELVSDYQPSGDQPTAINQLLEGLDSGLAHQTLLGVTGSGKTFTLANVIAKAQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K+FFPHNAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKSFFPHNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  E+Y QM++ ++ GD ++Q+++L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPEAYLQMMLHIRRGDVLDQRDILRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RG FRV G+ I+IFP+  +  A R+ MF ++I+ IS F PLTG    R++   
Sbjct: 183 RNDVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEIDCISIFDPLTGVVKQRDLPRF 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK EL+ R   L +  +LLE QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPRDRILDAIENIKVELESRKKYLLENNKLLEEQRISQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRKEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRP++FEE+  + P TI VSATPG++ELE+    I +Q++RPTGL+DP
Sbjct: 363 VEFGFRLPSALDNRPMKFEEFESIAPQTIFVSATPGNYELEKSDNEIADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI + + +  R+L+T LTKRMAEDLTEYL E +++VRY+HS++ 
Sbjct: 423 ELEVRPVATQVDDLLSEIRIRSVKDERVLVTTLTKRMAEDLTEYLTEHDVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ K ILYAD+ITKS++ A+DET RRREKQ E+N K  I PQ++K  I ++++   
Sbjct: 543 AARNVSGKAILYADSITKSMKKAMDETNRRREKQQEYNAKMGIEPQALKRNIKDIMELGD 602

Query: 738 LEDAATTNISI----------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           +  +    +S             +   ++ ++ +  +  L  QM+  A +L FE AA  R
Sbjct: 603 ITKSKKQRVSKAVPLSKVAESSQRYDVMTPQQLEKEISKLEAQMYQHAQDLEFELAAEKR 662

Query: 788 DEIKRLKSSPY 798
           D+I++L+    
Sbjct: 663 DQIEKLRQQFI 673


>gi|238763842|ref|ZP_04624800.1| UvrABC system protein B [Yersinia kristensenii ATCC 33638]
 gi|238697972|gb|EEP90731.1| UvrABC system protein B [Yersinia kristensenii ATCC 33638]
          Length = 680

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/665 (54%), Positives = 468/665 (70%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +++ P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +V
Sbjct: 13  KLFKLHSEFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMV 72

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 73  LAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 132

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 133 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLSELQYS 192

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ    V    
Sbjct: 193 RNDQVFQRGTFRVRGEVIDIFPAESDEWAVRVELFDEEVERLSIFDPLTGQLQHEVPRFT 252

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  AM+ IK EL  R   L    +L+E QR+ QR  +DLEM+   G 
Sbjct: 253 VYPKTHYVTPRERILQAMEDIKVELAERRQVLLANNKLVEEQRITQRTQFDLEMMNELGY 312

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL 
Sbjct: 313 CSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLV 372

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+  G I+EQ++RPTGL+DP 
Sbjct: 373 EYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPL 432

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI + A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 433 IEVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLVEHGARVRYLHSDIDT 492

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 493 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 552

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +K+ +++     
Sbjct: 553 ARNLNGKAILYGDRITASMEKAIGETQRRRAKQQTYNEERGIIPQGLNKKVGDILQLGQP 612

Query: 735 -PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                       +       SL+ K     ++ L  +M+  A NL FE+AA +RD++ +L
Sbjct: 613 SLRGKGKGRGGKVVDTHDYQSLAPKALDQKIRELEAKMYTHAQNLEFEQAAELRDQVHQL 672

Query: 794 KSSPY 798
           +    
Sbjct: 673 RQQFI 677


>gi|254491477|ref|ZP_05104656.1| excinuclease ABC, B subunit [Methylophaga thiooxidans DMS010]
 gi|224462955|gb|EEF79225.1| excinuclease ABC, B subunit [Methylophaga thiooxydans DMS010]
          Length = 668

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/661 (57%), Positives = 491/661 (74%), Gaps = 3/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +D+ P+GDQPAAI  L++G+ + E  Q LLGVTGSGKTFT+A V +A+ RP +V+A
Sbjct: 5   FQLVSDFSPAGDQPAAIETLIEGLENGEMWQTLLGVTGSGKTFTIANVAQAVGRPMMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSE K FFP+N+VEYFVSYYDYYQPEAYVP +DT+I+K++S+NEQI++MR 
Sbjct: 65  PNKTLAAQLYSEMKEFFPNNSVEYFVSYYDYYQPEAYVPSSDTFIDKDASVNEQIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D I+VSSVSCIYG+G  ++Y +M++ L  GD + Q+ +L  L + QY R 
Sbjct: 125 SATKAMLERRDAIIVSSVSCIYGLGEKDAYLEMVLHLVQGDVISQRNILRRLTELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + RGT+RV G+ I+IFP+  E  A RV +F ++IE+IS F PLTG+ ++ +  I IY
Sbjct: 185 DIELHRGTYRVRGEVIDIFPAESERDAVRVELFDDEIEQISYFDPLTGEVLQRLSRITIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  L  A+  IKEEL+ RL  L    +L+EAQRLEQR  +D+EML   G C 
Sbjct: 245 PKTHYVTPRDNLLKAVDAIKEELRERLEHLNSHDKLVEAQRLEQRTRFDIEMLLELGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGE PPTLF+Y+P D++L +DESHV +PQI  MY+GD  RK TL  Y
Sbjct: 305 GIENYSRHLSGRGPGEAPPTLFDYLPNDAILVIDESHVMVPQIGAMYKGDRSRKETLVNY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEEW  L P TI VSATP  +E E     IVEQ++RPTGLVDP VE
Sbjct: 365 GFRLPSALDNRPLMFEEWEKLAPQTIFVSATPSKYENEHS-STIVEQVVRPTGLVDPQVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI+       R+L+T LTKRM+EDLT+YL E N++VRY+HS++ T+E
Sbjct: 424 IRPVGTQVDDLLSEIHKRTAVNERVLVTTLTKRMSEDLTDYLREHNVKVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG+FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 484 RVEILRDLRLGEFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD IT S+Q A+DET RRREKQL HN++H I PQ +K+ I   +D    + 
Sbjct: 544 NLNGRAILYADEITGSMQRAMDETERRREKQLAHNEEHGITPQGIKKAIRAGMDDAKDKK 603

Query: 741 AATTNISID--AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
            +      +  A+  +L+ ++    ++ + + M+ AA NL FEEAA++RDE++ L+S   
Sbjct: 604 DSDYAKVAEEQAEYAALTPQQLAKRIQKIEQSMYKAAQNLEFEEAAKLRDELEHLRSVAL 663

Query: 799 F 799
            
Sbjct: 664 G 664


>gi|149377056|ref|ZP_01894807.1| excinuclease ABC subunit B [Marinobacter algicola DG893]
 gi|149358714|gb|EDM47185.1| excinuclease ABC subunit B [Marinobacter algicola DG893]
          Length = 687

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/674 (55%), Positives = 484/674 (71%), Gaps = 14/674 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI  L+ GIHS    Q LLGVTGSGKTFT+A VI+ +QRP I+MA
Sbjct: 15  FKVDSPFQPAGDQPKAIDGLVDGIHSGLAHQTLLGVTGSGKTFTIANVIQQVQRPTIIMA 74

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+ FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR 
Sbjct: 75  HNKTLAAQLYGEFREFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEHIEQMRL 134

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G  +SY +M++ L  GD ++Q+ +L  L + QY R 
Sbjct: 135 SATKALLERPDAIIVATVSSIYGLGDPQSYLKMMLHLDRGDQIDQRHILRRLAELQYTRN 194

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R  +RV GD I++FP+  E  A R+ +F +++E +S F PLTG+ +R V  + IY
Sbjct: 195 DVEFHRANYRVRGDVIDVFPAESEKEAIRIELFDDEVENLSYFDPLTGEVLRRVPRVTIY 254

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  +  A++ IK EL  RL +L    RL+EAQRLE+R  YD+EM+   G C 
Sbjct: 255 PKSHYVTPRQKVLDAVERIKVELDERLKQLRDNNRLVEAQRLEERTRYDIEMMLELGYCN 314

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGE PPTLF+Y+P +++L VDESHVTIPQI  MY+GD  RK TL EY
Sbjct: 315 GIENYSRYLSGRQPGEAPPTLFDYLPANAMLVVDESHVTIPQIGAMYKGDRSRKETLVEY 374

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RF+EW  + P  + VSATPG++E E   G +VEQ++RPTGL+DP +E
Sbjct: 375 GFRLPSALDNRPMRFDEWERIAPQMLFVSATPGNYEAEHS-GQVVEQVVRPTGLLDPEIE 433

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI L      RIL+T LTKRMAEDLT++L E +IRVRY+HS++ T+E
Sbjct: 434 VRPASTQVDDLLSEIRLRTDVNERILVTTLTKRMAEDLTDFLMEHDIRVRYLHSDIDTVE 493

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 494 RVEIIRDLRRGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 553

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           N++ K ILY D IT S+Q AIDET RRR KQ  HN++H I PQ + +KI ++++      
Sbjct: 554 NLHGKAILYGDRITGSMQRAIDETGRRRAKQAAHNEEHGITPQGLNKKIADIMEGAGGGG 613

Query: 739 -----------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                      E AA       A+  + S ++    +  L   M+ AA +L+FE AAR+R
Sbjct: 614 GRGRRKAERPGEKAAEEAEKYRAKAGNRSPEEVLKEITRLEDDMYKAAADLDFETAARLR 673

Query: 788 DEIKRLKSSPYFQG 801
           D+I  LK +    G
Sbjct: 674 DDISELKEAALRTG 687


>gi|322389662|ref|ZP_08063210.1| excision endonuclease subunit UvrB [Streptococcus parasanguinis
           ATCC 903]
 gi|321143661|gb|EFX39091.1| excision endonuclease subunit UvrB [Streptococcus parasanguinis
           ATCC 903]
          Length = 662

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/655 (54%), Positives = 475/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + +  LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDRLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++IE I E   LTGQ + +V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIERIREIEALTGQVLGDVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLKVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINARVERGERTFVTTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADTIT+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTITQSMQKAIDETARRRQIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL++++ K  +K L+ QM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDITSLNRQERKELVKKLQGQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|167578839|ref|ZP_02371713.1| excinuclease ABC subunit B [Burkholderia thailandensis TXDOH]
          Length = 696

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/671 (54%), Positives = 480/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y PSGDQP AIA L++G+      Q LLGVTGSGKT+TMA  I  + RPA
Sbjct: 21  EGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGVTGSGKTYTMANTIARLGRPA 80

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 81  IVFAPNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 140

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+E+++ L+  Q
Sbjct: 141 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKIGQREVIARLIAMQ 200

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F ++++ +  F PLTG+  + +  
Sbjct: 201 YTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELFDDEVDTLHLFDPLTGRVRQKIPR 260

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK+EL+ RL    ++G+L+EAQRLEQR  +DLEML+  
Sbjct: 261 FTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHRDGKLVEAQRLEQRTRFDLEMLQEL 320

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G  PGEPPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 321 GFCKGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYNGDRARKEN 380

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F E+       + VSATP  +E     G   EQ++RPTGLVD
Sbjct: 381 LVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYEQRVS-GQTAEQVVRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A TQV+DV  EI    +   R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 440 PEIEVRPASTQVDDVLSEITERVKADERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 500 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K +LYAD IT S++ AIDET RRR KQ+ +N +  I P+ V ++I ++ID +
Sbjct: 560 RAARNVNGKALLYADRITDSMRRAIDETERRRAKQIAYNHERGITPRGVVKRIKDIIDGV 619

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA+ RD++  L
Sbjct: 620 YNADEARAELKEAQQRAKFEDMSEKQIAKEIKRLEKQMADYAKNLEFEKAAQTRDQLALL 679

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 680 RERVFGANVGD 690


>gi|288870822|ref|ZP_06115431.2| excinuclease ABC subunit B [Clostridium hathewayi DSM 13479]
 gi|288865783|gb|EFC98081.1| excinuclease ABC subunit B [Clostridium hathewayi DSM 13479]
          Length = 683

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/673 (52%), Positives = 470/673 (69%), Gaps = 5/673 (0%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
               K    F++ ++Y P+GDQP AI  L+KG     + Q LLGVTGSGKTFTMA VI+ 
Sbjct: 16  PRKEKAKMEFKLHSEYQPTGDQPQAIEALVKGFQEGNQFQTLLGVTGSGKTFTMANVIQR 75

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +Q+P +++A NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+I
Sbjct: 76  IQKPTLIIAHNKTLAAQLYSEFKEYFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAI 135

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           N++ID++RHSAT +L ER D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E++  
Sbjct: 136 NDEIDKLRHSATAALSEREDVIIVASVSCIYGLGSPIDYKEMVISLRPGMEKDRDEVIHK 195

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           L+  QY R D+   RG+FRV GD +EI+P++    A+RV  FG+++E I+E   LTG+  
Sbjct: 196 LIDIQYTRNDMDFKRGSFRVRGDVLEIYPAYSGGDAYRVEFFGDEVERITEIDSLTGEGK 255

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
             +  I I+  SHYV  +  +  A + I  ELK ++   + E +LLEAQR+ +R  +D+E
Sbjct: 256 AELGHIAIFPASHYVVSKEKMELATQTILAELKEQVAYFKSEDKLLEAQRISERTNFDVE 315

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M+  TG C  IENYSR+LTG  PGEPP TL +Y P+D L+ VDESH+T+PQ+ GM+ GD 
Sbjct: 316 MMRETGFCSGIENYSRHLTGSLPGEPPCTLIDYFPDDFLIIVDESHITLPQVRGMFAGDR 375

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK TL  YGFRLPS +DNRPL FEE+       + VSATP  +E    + + VEQIIRP
Sbjct: 376 SRKTTLVNYGFRLPSALDNRPLNFEEFESKIDQMMFVSATPSVYEANH-EMLRVEQIIRP 434

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP +E+R    Q++D+  E+N       +IL+T LTKRMAEDLT+Y+ E  IRV+Y
Sbjct: 435 TGLLDPEIEVRPVEGQIDDLVSEVNKEVANKHKILITTLTKRMAEDLTDYMREIGIRVKY 494

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS++ TLER EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSL
Sbjct: 495 LHSDIDTLERSEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSL 554

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQT+GRAARN    VI+YAD+IT S+++AI+ET RRR  Q ++N++H I P ++K+ + +
Sbjct: 555 IQTVGRAARNSEGHVIMYADSITDSMRVAIEETNRRRAIQQQYNEEHGITPTTIKKSVRD 614

Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           +I           +   D +  S+  K+ +   K L K+MH AA  LNFEEAAR+RD + 
Sbjct: 615 LIAISKAAIEDKKSFEKDPE--SMDAKELEKLAKELTKKMHQAAAELNFEEAARLRDRMV 672

Query: 792 RLKSSPYFQGLDD 804
            +K     Q LD+
Sbjct: 673 EVKK--MLQELDE 683


>gi|227545102|ref|ZP_03975151.1| excision endonuclease subunit UvrB [Lactobacillus reuteri CF48-3A]
 gi|300909227|ref|ZP_07126688.1| excision endonuclease subunit UvrB [Lactobacillus reuteri SD2112]
 gi|227184922|gb|EEI64993.1| excision endonuclease subunit UvrB [Lactobacillus reuteri CF48-3A]
 gi|300893092|gb|EFK86451.1| excision endonuclease subunit UvrB [Lactobacillus reuteri SD2112]
          Length = 690

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/661 (52%), Positives = 467/661 (70%), Gaps = 5/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL KGI   EK Q+LLG TG+GKTFT++ VI  + +P ++++
Sbjct: 29  FELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTLILS 88

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 89  HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 148

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y   ++ L++G  +E+  LL+ LV  Q+ R 
Sbjct: 149 SATTSLLERNDVIVVASVSSIFGLGDPREYQNSVLSLRVGQEIERDRLLTELVNIQFDRN 208

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A R+  FG++I+ I E   LTG+ I + + + I+
Sbjct: 209 DIDFQRGRFRVRGDVVEIFPASRDERALRIEFFGDEIDRIREVDALTGEVIGDRDHVSIF 268

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +   EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 269 PATHFMTNEEVMDRALPQIEADMKKQVKKFTDEGKLLEAERIQQRTTYDIEMMREMGYTN 328

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+ GR PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 329 GIENYSRYMDGRKPGEPPYTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 388

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + +SATPG +E+EQ    + +QIIRPTGL+DP VE
Sbjct: 389 GFRLPSALDNRPLKLPEFEQHVNQVVYMSATPGPYEMEQT-DHVAQQIIRPTGLLDPTVE 447

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+M+EDLT+YL +  +RV+Y+HS++KTLE
Sbjct: 448 VRPVMGQIDDLVGEINKRIEKNERVFVTTLTKKMSEDLTDYLKDMGLRVKYLHSDIKTLE 507

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 508 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 567

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----DPI 736
           N N  VI+YADT+T S+Q A+DET RRR  Q+++N++H+I P ++ + I E I       
Sbjct: 568 NENGAVIMYADTVTDSMQKAMDETKRRRTIQMKYNEEHHITPHTIIKPIQEAITVTKKAT 627

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              +A  +    D     L K+     L  L +QM  AA  L+FE+AA +RD I  LK+ 
Sbjct: 628 DEAEADNSAEFTDKDFAKLDKEAQAKMLDELTEQMRSAAKRLDFEQAATLRDTIMELKTK 687

Query: 797 P 797
            
Sbjct: 688 A 688


>gi|262402633|ref|ZP_06079194.1| excinuclease ABC subunit B [Vibrio sp. RC586]
 gi|262351415|gb|EEZ00548.1| excinuclease ABC subunit B [Vibrio sp. RC586]
          Length = 676

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/669 (54%), Positives = 479/669 (71%), Gaps = 11/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ S    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLDSGLAHQTLLGVTGSGKTFTLANVIATAQRPTILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG    R++    +
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFEPLTGVVTSRDLARFTV 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIELIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATPG +EL +  G + +Q++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPGEYELTKSGGEVADQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARVRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N K ILYAD+ITKS++ A+DET RRREKQ  +N++  I PQ +K  + ++++   + 
Sbjct: 545 RNINGKAILYADSITKSMRKAMDETERRREKQHAYNEQLGITPQPLKRSVKDIMELGDIA 604

Query: 740 DAATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            +                  AQ   L+ ++ +  +  L   M+  A NL FE AA+ RDE
Sbjct: 605 KSRKQKNSKVVPLAKVAEESAQYQVLTPQQLEKEISKLETVMYQHAQNLEFELAAQKRDE 664

Query: 790 IKRLKSSPY 798
           I +L+    
Sbjct: 665 IHQLRQQFI 673


>gi|325128411|gb|EGC51293.1| excinuclease ABC, B subunit [Neisseria meningitidis N1568]
          Length = 675

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/665 (53%), Positives = 478/665 (71%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIARSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++ Q++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIAQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A   IKEEL+ R+    KE R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACDSIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPSNTIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+           ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDGGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRNIK 667

Query: 795 SSPYF 799
            S  F
Sbjct: 668 ESLLF 672


>gi|15642773|ref|NP_230664.1| excinuclease ABC subunit B [Vibrio cholerae O1 biovar El Tor str.
           N16961]
          Length = 676

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/669 (54%), Positives = 476/669 (71%), Gaps = 11/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   Q P I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQLPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF ++IE IS F PLTG    R++    I
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+F+E+  L P TI VSATP  +EL +  G + EQ++RPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GRAA
Sbjct: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K ILYAD+ITKS++ AIDET RRREKQL +N++  I PQ +K  + ++++   + 
Sbjct: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIA 604

Query: 740 DAATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            +                  A    L+ ++ +  +  L   M+  A NL FE AA+ RDE
Sbjct: 605 KSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRDE 664

Query: 790 IKRLKSSPY 798
           I +L+    
Sbjct: 665 IHQLRQQFI 673


>gi|152969361|ref|YP_001334470.1| excinuclease ABC subunit B [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|262041140|ref|ZP_06014357.1| excinuclease ABC subunit B [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330014492|ref|ZP_08307932.1| excinuclease ABC, B subunit [Klebsiella sp. MS 92-3]
 gi|189037970|sp|A6T6L9|UVRB_KLEP7 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|150954210|gb|ABR76240.1| excinuclease ABC subunit B [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|259041514|gb|EEW42568.1| excinuclease ABC subunit B [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328533019|gb|EGF59793.1| excinuclease ABC, B subunit [Klebsiella sp. MS 92-3]
          Length = 673

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/663 (55%), Positives = 470/663 (70%), Gaps = 8/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I++FP+  +D+A R+ +F  ++E +S F PLTG     V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG++EL++  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI L      R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           NVN K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++       
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQLGQGLA 604

Query: 735 --PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                    A          + ++ K  +  +  L  QM   A NL FEEAA+IRD++ +
Sbjct: 605 KTKAKGRGKAKAVEPAGLSAVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQ 664

Query: 793 LKS 795
           L+ 
Sbjct: 665 LRE 667


>gi|51595531|ref|YP_069722.1| excinuclease ABC subunit B [Yersinia pseudotuberculosis IP 32953]
 gi|153950655|ref|YP_001401802.1| excinuclease ABC subunit B [Yersinia pseudotuberculosis IP 31758]
 gi|170025148|ref|YP_001721653.1| excinuclease ABC subunit B [Yersinia pseudotuberculosis YPIII]
 gi|186894586|ref|YP_001871698.1| excinuclease ABC subunit B [Yersinia pseudotuberculosis PB1/+]
 gi|81825889|sp|Q66D62|UVRB_YERPS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189038011|sp|A7FKM4|UVRB_YERP3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238688574|sp|B1JSR9|UVRB_YERPY RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238691437|sp|B2K8T5|UVRB_YERPB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|51588813|emb|CAH20427.1| excinuclease ABC subunit B [Yersinia pseudotuberculosis IP 32953]
 gi|152962150|gb|ABS49611.1| UvrABC system, B protein [Yersinia pseudotuberculosis IP 31758]
 gi|169751682|gb|ACA69200.1| excinuclease ABC, B subunit [Yersinia pseudotuberculosis YPIII]
 gi|186697612|gb|ACC88241.1| excinuclease ABC, B subunit [Yersinia pseudotuberculosis PB1/+]
          Length = 671

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/664 (54%), Positives = 471/664 (70%), Gaps = 6/664 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +++A
Sbjct: 5   FKLHSVFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ    V    +Y
Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+  G I+EQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A    R+L+T LTKRMAEDLT+YL E   +VRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTDYLSEHGAKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           N+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +KI +++       
Sbjct: 545 NLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLGQPSM 604

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               +   +  ++   Q  SLS K     ++ L  +M+  A NL FE+AA +RD++ +L+
Sbjct: 605 RGKGKGRGSHKMADTTQYQSLSPKALDQKIRELEAKMYTYAQNLEFEQAAELRDQVHQLR 664

Query: 795 SSPY 798
               
Sbjct: 665 QQFI 668


>gi|85860217|ref|YP_462419.1| excinuclease ABC subunit B [Syntrophus aciditrophicus SB]
 gi|85723308|gb|ABC78251.1| excinuclease ABC subunit B [Syntrophus aciditrophicus SB]
          Length = 696

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/656 (56%), Positives = 490/656 (74%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ T++ P GDQP AI +L  G+      Q+L+GVTGSGKTFT+A VIEA+Q+PA+
Sbjct: 29  MKPFRIVTEFKPRGDQPQAIEKLADGLRLGLPHQVLVGVTGSGKTFTIANVIEAVQKPAL 88

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++APNK LAAQLY EFK+ FP NAVEYFVSYYDYYQPEAY+P TDTYIEK+SSINE ID+
Sbjct: 89  IIAPNKTLAAQLYGEFKSLFPDNAVEYFVSYYDYYQPEAYIPSTDTYIEKDSSINEDIDK 148

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+AT SLL+R D I+V+SVSCIYG+GS E+Y  ++++L+ G  + ++ +L  LV  QY
Sbjct: 149 LRHAATHSLLDRRDVIIVASVSCIYGLGSPEAYQGLLLELEAGMELSREMMLRRLVDIQY 208

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RG+FRV GD +EIFP + ED A RV  FG+ ++ +S   PL G+K+ ++E I
Sbjct: 209 ERNDVDFHRGSFRVRGDVVEIFPPYEEDRAIRVEFFGDVVDALSFVDPLRGKKLHSLERI 268

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  SHYVT R  LN A+  I+EEL+ RL EL    +LLEAQRLEQR  +D+EM+E  G
Sbjct: 269 AVYPGSHYVTTRDNLNRAIAAIREELQGRLAELHAANKLLEAQRLEQRTNFDIEMMEEMG 328

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+LTGR PGEPPPTL EY+P+D+L+ +DESHVT+PQ+ GMYRGD  RK TL
Sbjct: 329 YCQGIENYSRHLTGRAPGEPPPTLVEYLPKDALIILDESHVTVPQLIGMYRGDRSRKETL 388

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPLRFEE+       + +SATP ++E+++    +VEQIIRPTGL+DP
Sbjct: 389 VNYGFRLPSALDNRPLRFEEYEKFPQQRLYISATPAAYEIKKAGPHVVEQIIRPTGLMDP 448

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    QV+D+  EI   A++  R+L+T LTKRMAE+L+ Y     ++V+Y+HS+V+
Sbjct: 449 EIIVRPVTGQVDDLLTEIRRRAEKKERVLVTTLTKRMAENLSTYYEGLGVKVKYLHSDVQ 508

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+ IIRDLRLG+FDVLVG+NLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT GR
Sbjct: 509 TLERVSIIRDLRLGEFDVLVGVNLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTSGR 568

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VI+YADTIT+SIQ  +DET RRR  Q  +N++H+I P+S+K+ I  ++  I 
Sbjct: 569 AARNVGGQVIMYADTITRSIQACLDETRRRRALQERYNREHSITPESIKKSIDNILSSIY 628

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             D  +  +  + +Q+ LS    +  ++ L+ +M  AA  L FE+AAR+RD+IK L
Sbjct: 629 EADYVSVPVVSEEKQVYLSDTDLEKTIRQLKGEMKEAAKRLEFEKAARLRDQIKAL 684


>gi|15675262|ref|NP_269436.1| excinuclease ABC subunit B [Streptococcus pyogenes M1 GAS]
 gi|71910888|ref|YP_282438.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS5005]
 gi|209559562|ref|YP_002286034.1| excinuclease ABC subunit B [Streptococcus pyogenes NZ131]
 gi|306827162|ref|ZP_07460452.1| excision endonuclease subunit UvrB [Streptococcus pyogenes ATCC
           10782]
 gi|20532293|sp|Q99ZA5|UVRB_STRP1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226698342|sp|B5XLX7|UVRB_STRPZ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|13622435|gb|AAK34157.1| putative excinuclease ABC (subunit B) [Streptococcus pyogenes M1
           GAS]
 gi|71853670|gb|AAZ51693.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS5005]
 gi|209540763|gb|ACI61339.1| Excinuclease ABC (Subunit B), helicase subunit of the DNA excision
           repair complex [Streptococcus pyogenes NZ131]
 gi|304430618|gb|EFM33637.1| excision endonuclease subunit UvrB [Streptococcus pyogenes ATCC
           10782]
          Length = 663

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/659 (53%), Positives = 471/659 (71%), Gaps = 3/659 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +D   F++++ Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P
Sbjct: 5   RDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + +  LL+ LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTG+ I  V+
Sbjct: 185 QFERNDIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML  
Sbjct: 245 HLVLFPATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTSGVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+ Q    I+EQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGEYEMSQT-NTIIEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +++RS+  Q++D+  EIN    +  R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEIDVRSSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+  VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I  +I  
Sbjct: 544 GRAARNVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   +   +D    S+S+ + K  + +L+KQM  AA+ L+FE AA++RD I  LK
Sbjct: 604 SKTSHNDISKEEMD--YESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660


>gi|148543619|ref|YP_001270989.1| excinuclease ABC subunit B [Lactobacillus reuteri DSM 20016]
 gi|227363418|ref|ZP_03847542.1| excision endonuclease subunit UvrB [Lactobacillus reuteri MM2-3]
 gi|325681973|ref|ZP_08161491.1| excision endonuclease subunit UvrB [Lactobacillus reuteri MM4-1A]
 gi|148530653|gb|ABQ82652.1| Excinuclease ABC subunit B [Lactobacillus reuteri DSM 20016]
 gi|227071518|gb|EEI09817.1| excision endonuclease subunit UvrB [Lactobacillus reuteri MM2-3]
 gi|324978617|gb|EGC15566.1| excision endonuclease subunit UvrB [Lactobacillus reuteri MM4-1A]
          Length = 690

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/661 (52%), Positives = 467/661 (70%), Gaps = 5/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL KGI   EK Q+LLG TG+GKTFT++ VI  + +P ++++
Sbjct: 29  FELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTLILS 88

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 89  HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 148

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y   ++ L++G  +E+  LL+ LV  Q+ R 
Sbjct: 149 SATTSLLERNDVIVVASVSSIFGLGDPREYQNSVLSLRVGQEIERDRLLTELVNIQFDRN 208

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E   LTG+ I + + + I+
Sbjct: 209 DIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDEIDRIREVDALTGEVIGDRDHVSIF 268

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +   EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 269 PATHFMTNEEVMDRALPQIEADMKKQVKKFTDEGKLLEAERIQQRTTYDIEMMREMGYTN 328

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+ GR PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 329 GIENYSRYMDGRKPGEPPYTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 388

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + +SATPG +E+EQ    + +QIIRPTGL+DP VE
Sbjct: 389 GFRLPSALDNRPLKLPEFEQHVNQVVYMSATPGPYEMEQT-DHVAQQIIRPTGLLDPTVE 447

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+M+EDLT+YL +  ++V+Y+HS++KTLE
Sbjct: 448 VRPVMGQIDDLVGEINKRIEKNERVFVTTLTKKMSEDLTDYLKDMGLKVKYLHSDIKTLE 507

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 508 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 567

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----DPI 736
           N N  VI+YADT+T S+Q A+DET RRR  Q+++N++H+I P ++ + I E I       
Sbjct: 568 NENGAVIMYADTVTDSMQKAMDETKRRRTIQMKYNEEHHITPHTIIKPIQEAITVTKKAT 627

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              +A  +    D     L K+     L  L +QM  AA  L+FE+AA +RD I  LK+ 
Sbjct: 628 DETEADNSAEFTDKDFAKLDKEAQAKMLDELTEQMRSAAKRLDFEQAATLRDTIMELKTK 687

Query: 797 P 797
            
Sbjct: 688 A 688


>gi|78067007|ref|YP_369776.1| excinuclease ABC subunit B [Burkholderia sp. 383]
 gi|77967752|gb|ABB09132.1| Excinuclease ABC subunit B [Burkholderia sp. 383]
          Length = 707

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/671 (54%), Positives = 483/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + FQ+   Y P+GDQP AI  L++G+      Q LLGVTGSGKTFTMA  I  + RPA
Sbjct: 32  EGSPFQLYQPYPPAGDQPTAIETLVEGVEDGLSFQTLLGVTGSGKTFTMANTIARLGRPA 91

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I+
Sbjct: 92  IVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIE 151

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VS IYGIG+   Y QMI+ L+ GD + Q+++++ L+  Q
Sbjct: 152 QMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRAGDKLGQRDVIARLIAMQ 211

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +    RGTFRV GD+I+IFP+   ++A RV +F +++E +  F PLTG+  + +  
Sbjct: 212 YTRNEQDFQRGTFRVRGDTIDIFPAEHAELAVRVELFDDEVETLQLFDPLTGRVRQKIPR 271

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y +SHYVTPR T+  A++ IK+EL+ RL     +G+L+EAQRLEQR  +DLEML+  
Sbjct: 272 FTVYPSSHYVTPRDTVMRAVETIKDELRERLEFFHSDGKLVEAQRLEQRTRFDLEMLQEL 331

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G +PG+PPPTL +Y+P D+L+ +DESHV I Q++GMY GD  RK  
Sbjct: 332 GFCKGIENYSRHFSGASPGDPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKEN 391

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRPL+F E+       + VSATP  +E ++  G I EQ++RPTGLVD
Sbjct: 392 LVNYGFRLPSALDNRPLKFPEFERKMRQVVFVSATPADYE-KRVTGQIAEQVVRPTGLVD 450

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R A +QV+DV  EIN   +   R+L+TVLTKRMAE LTE+L +  ++VRY+HS++
Sbjct: 451 PEIEVRPASSQVDDVLAEINARVKAEERVLITVLTKRMAEQLTEFLADHGVKVRYLHSDI 510

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 511 DTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 570

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYAD +T+S++ AI ET RRR KQ+ HN+K  I P+ V ++I ++ID +
Sbjct: 571 RAARNVNGKAILYADNMTESMKRAIGETERRRAKQIAHNEKMGITPRGVVKRIKDIIDGV 630

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              D A   +      A+   +S+K+    +K L KQM   A NL FE+AA  RD++  L
Sbjct: 631 YNADEARAELKEAQQRAKFEDMSEKQLAKEIKRLEKQMADYAKNLEFEKAASTRDQLALL 690

Query: 794 KSSPYFQGLDD 804
           +   +   + D
Sbjct: 691 RERVFGANVGD 701


>gi|217967273|ref|YP_002352779.1| excinuclease ABC, B subunit [Dictyoglomus turgidum DSM 6724]
 gi|217336372|gb|ACK42165.1| excinuclease ABC, B subunit [Dictyoglomus turgidum DSM 6724]
          Length = 662

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/660 (54%), Positives = 471/660 (71%), Gaps = 4/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F + +++ P GDQP AI +L +G+    + Q L+GVTGSGKTFTMA +I  +Q+P +
Sbjct: 1   MSGFILVSEFKPCGDQPQAIEKLTEGVKRGLRYQTLIGVTGSGKTFTMANIIANVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P+TDTYIEK++ IN++IDR
Sbjct: 61  VIAPNKTLAAQLYSEFKEFFPYNAVEYFVSYYDYYQPEAYIPQTDTYIEKDADINDRIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHS T SLL R D IVV+SVSCIYG+GS   Y++MI+++K G+ + ++ LL  L+K QY
Sbjct: 121 LRHSTTSSLLSRRDVIVVASVSCIYGLGSPMDYAEMILRVKRGEDLPRETLLRKLIKLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D    RG FRV GD +E+FP   E  A RV  +G++IE ISE  PL G++I +   +
Sbjct: 181 ERNDYEFTRGKFRVRGDIVEVFPIGGE-TAIRVEYWGDNIERISEIDPLNGKRIIDFNEV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HY+ P   +  A++ IK EL  RL EL  +G+ LEA+RLE R  YD+E+L   G
Sbjct: 240 FIYPATHYIAPTEKMERAIESIKRELTERLEELRAQGKFLEAKRLEARTLYDIELLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSR+  GR PGEPP TL +Y P+D L+F+DESH+TIPQ+  MY GD  RK  L
Sbjct: 300 YCKGIENYSRHFDGRKPGEPPYTLLDYFPDDFLVFIDESHLTIPQLRAMYHGDKSRKDNL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL FEE+    P  I VSATP  +EL   +  +VEQ+IRPTGL+DP
Sbjct: 360 VEYGFRLPSAYDNRPLTFEEFWERVPQVIFVSATPAEFELSVSEQ-VVEQLIRPTGLLDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+     Q++ +  EI     +G R+L+T LTKR AEDL EYL    I V Y+HSE++
Sbjct: 419 EIEVHPTEGQIDHLISEIKKVVARGERVLVTTLTKRTAEDLAEYLSNLGINVTYLHSEIE 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER  I+++LRLGKFDVLVGINLLREGLD+PE  LVAILDAD+EGFLRS+ SLIQ +GR
Sbjct: 479 TLERTGILQNLRLGKFDVLVGINLLREGLDLPEVSLVAILDADREGFLRSERSLIQVMGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN KVI+YAD IT+S++ AI ET RRR+ Q+E+NK H I P+S+K+ + EV D   
Sbjct: 539 AARNVNGKVIMYADVITESMRKAIQETERRRKIQMEYNKAHGIIPKSIKKPVKEVFD--F 596

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +E  A       A    LS  + +  ++ L K+M+ AA  L+FE+AA +RD+IK LK+  
Sbjct: 597 VEAVAEKKADYRAISKKLSIDEIEEVIRQLEKEMYEAAAELDFEKAAYLRDQIKELKNEL 656


>gi|296103294|ref|YP_003613440.1| excinuclease ABC subunit B [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295057753|gb|ADF62491.1| excinuclease ABC subunit B [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 671

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/662 (55%), Positives = 474/662 (71%), Gaps = 6/662 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMIIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTG     ++   
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGHVESVIQRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAERRKVLLANNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPV 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   +    R+L+T LTKRMAEDLTEYL E   +VRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRARSAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV------ 732
           ARNVN K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K++++      
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGITPQGLNKKVVDILALGQN 602

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           I     +        ++   ++L+ K  +  +  L  QM   A NL FEEAA+IRD++ +
Sbjct: 603 IAKTKAKGRGKARSVVEEDTVALTPKALQQKIHELEAQMMQHAQNLEFEEAAQIRDQLHQ 662

Query: 793 LK 794
           L+
Sbjct: 663 LR 664


>gi|19746295|ref|NP_607431.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS8232]
 gi|23822292|sp|Q8P0J7|UVRB_STRP8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|19748485|gb|AAL97930.1| putative excinuclease ABC (subunit B) [Streptococcus pyogenes
           MGAS8232]
          Length = 663

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/659 (53%), Positives = 469/659 (71%), Gaps = 3/659 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +D   F++++ Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P
Sbjct: 5   RDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + +  LL+ LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTG+ I  V+
Sbjct: 185 QFERNDIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML  
Sbjct: 245 HLVLFPATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTSGVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR +E+       + VSATPG +E+ Q    I+EQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRRKEFESHVHQIVYVSATPGEYEMSQT-NTIIEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +++R +  Q++D+  EIN    +  R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEIDVRPSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+  VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I   I  
Sbjct: 544 GRAARNVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGFISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   +   +D    S+S+ + K  + +L+KQM  AA+ L+FE AA++RD I  LK
Sbjct: 604 SKTSHNDISKEEMD--YESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660


>gi|71737418|ref|YP_274169.1| excinuclease ABC subunit B [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|90111045|sp|Q48KA6|UVRB_PSE14 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|71557971|gb|AAZ37182.1| excinuclease ABC, B subunit [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 671

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/670 (54%), Positives = 485/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +
Sbjct: 1   MSEFQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQVKRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+I+P+  +  A RV +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLIEAMEGIKVELQERLEYLRTQNKLVEAQRLEQRTRFDLEMMLELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G +VEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR A TQV+D+  EI+       R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ 
Sbjct: 420 QIEIRPALTQVDDLLSEIHKRTALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S++ AI ET RRR+KQL  N +H I P+ V + + ++++   
Sbjct: 540 AARNLNGRAILYADRITGSMERAIGETERRRDKQLAFNHEHGITPKGVFKDVADIMEGAT 599

Query: 738 LEDAATTNISIDAQQLS---------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  + +      A+             S  +    ++ L ++M+  A +L FE AA++RD
Sbjct: 600 VPGSRSKKRKGMAKAAEENARYENELRSPSEINKRIRQLEEKMYQLARDLEFEAAAQMRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EIGKLRERLL 669


>gi|297538628|ref|YP_003674397.1| excinuclease ABC subunit B [Methylotenera sp. 301]
 gi|297257975|gb|ADI29820.1| excinuclease ABC, B subunit [Methylotenera sp. 301]
          Length = 682

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/669 (54%), Positives = 480/669 (71%), Gaps = 4/669 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + +Q+   + P+GDQP AI +L +GI    K Q LLGVTGSGKT+TMA VI    RPAIV
Sbjct: 12  SKYQLNQPFPPAGDQPQAIDKLTQGIDDGLKFQTLLGVTGSGKTYTMANVIARTGRPAIV 71

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLYSEF+ FFP+N+VEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++M
Sbjct: 72  MAPNKTLAAQLYSEFREFFPNNSVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQM 131

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V++VS IYGIG    Y  M++ L+ G+ + Q+++++ LV  QY 
Sbjct: 132 RLSATKALLEREDSIIVATVSAIYGIGDPTDYHGMVLHLQQGEKIPQRDMIARLVGMQYD 191

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +    RGTFRV GD I++FP+   + A  +SMF ++IE I+ F PLTGQ    +    
Sbjct: 192 RNEFDFSRGTFRVRGDVIDVFPAENNETAVHISMFDDEIESITLFDPLTGQIFNKIPRYT 251

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +SHYVTPR T   AM+ IK ELK R+    K G+L+EA R+EQR  +DLEML   G 
Sbjct: 252 VYPSSHYVTPRETTIRAMEKIKHELKDRVDFYIKTGKLVEAARIEQRTRFDLEMLNEIGF 311

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+G NPG+PPPTL +Y+P+++L+ +DESHVT+PQI  MY+GD  RK  L 
Sbjct: 312 CKGIENYSRHLSGGNPGDPPPTLIDYLPDNALMIIDESHVTVPQIGAMYKGDRSRKENLV 371

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YG+RLPS +DNRPL+FEE+  +    + VSATP  +E    Q  +VE I RPTGLVDP 
Sbjct: 372 DYGWRLPSALDNRPLKFEEFERIMRQCVFVSATPSEYEANH-QQQVVEMIARPTGLVDPQ 430

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + ++ A TQV+D+  EI L    G R+L T LTKRM+EDLT+YL E  ++VRY+HS++ T
Sbjct: 431 ITVKPADTQVDDLLGEIKLRVAVGERVLATTLTKRMSEDLTDYLSEHGVKVRYLHSDIDT 490

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQT GRA
Sbjct: 491 VERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTAGRA 550

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N +VI YA+ IT+S++ A+DET RRR  QL  N+ + I P+ + ++I ++ID +  
Sbjct: 551 ARNLNGQVIFYANKITRSMKAAMDETERRRGVQLAFNEANGIVPKGISKRIKDIIDGVYD 610

Query: 739 EDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +D A     +    A   SLS+K+    +K L K MH AA NL FE+AA  RD++K+L+ 
Sbjct: 611 KDEAQRERKVLQDQANYESLSEKQIAKEMKRLEKAMHDAAKNLEFEKAADFRDQLKKLRV 670

Query: 796 SPYFQGLDD 804
             Y   + D
Sbjct: 671 KFYGAEMPD 679


>gi|296876387|ref|ZP_06900439.1| excision endonuclease subunit UvrB [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432677|gb|EFH18472.1| excision endonuclease subunit UvrB [Streptococcus parasanguinis
           ATCC 15912]
          Length = 662

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/655 (54%), Positives = 476/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ + +V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGDVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLKVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINARVERGERTFVTTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQKAIDETARRRKIQIAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL++++ K  +K L+ QM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDITSLNRQERKELVKKLQGQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|269467817|gb|EEZ79569.1| excinuclease ABC subunit B [uncultured SUP05 cluster bacterium]
          Length = 663

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/658 (56%), Positives = 492/658 (74%), Gaps = 1/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++ + P+GDQP AI  L+ G+++ EK Q LLGVTGSGKTFT+A VI+  +R +++MA
Sbjct: 5   FQLESQFSPTGDQPQAIKALVDGVNAGEKFQTLLGVTGSGKTFTLANVIKQTKRASLIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSE K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK+SSINEQI++MR 
Sbjct: 65  PNKTLAAQLYSEMKEFFPHNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINEQIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER+D I+++SVS IYG+G  +SY QM++ L +G+   Q+E+LS L + QY R 
Sbjct: 125 SATKSLLERDDVIIIASVSAIYGLGDPDSYMQMLLHLSVGEVTNQREILSRLSQMQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ ++RG FRV G+ I+IFP+  E+ A R+ MF ++IE I  F PLTG+K+++++ I IY
Sbjct: 185 DVTLMRGHFRVKGEVIDIFPADSEEQAIRIEMFDDEIEAIYWFDPLTGEKLKSLQRITIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTP+  +   +  IK ELK+R  EL    +L+E QRL QR+  D+EM+   G C 
Sbjct: 245 PQTHYVTPKSKILNTLDDIKAELKVRRKELLSLNKLVEEQRLTQRVKMDIEMMRELGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GE PPTL +Y+P+++L+ +DESHVT+ QI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRKSGEAPPTLMDYLPDNALVILDESHVTVSQIGGMYKGDRARKTTLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+       I+VSATP ++ELE    +I EQ++RPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLKFNEFEDRAHQCILVSATPAAYELEVS-NVIAEQVVRPTGLLDPEID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI+   + G R+L+T LTKRM+E L++YL +  ++VRY+HS++ T+E
Sbjct: 424 IRPVDTQVDDLLSEIHKCVKVGERVLVTTLTKRMSEQLSDYLNDHGVKVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN + ILYAD IT S+Q A+DET+RRR+KQ  +NKKHNI P+ V + I+ ++D  +   
Sbjct: 544 NVNGRAILYADRITGSMQRAMDETSRRRKKQEAYNKKHNITPRGVVKPIINILDTDITSQ 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
               N+  +  Q  LS  +    +K+L KQM+  A  L FE+AA +R++IK LK   +
Sbjct: 604 EDDDNMVNENIQRQLSPVQLVKEIKALEKQMYTFAGELKFEKAADVRNQIKLLKDGQF 661


>gi|322391788|ref|ZP_08065253.1| excision endonuclease subunit UvrB [Streptococcus peroris ATCC
           700780]
 gi|321145268|gb|EFX40664.1| excision endonuclease subunit UvrB [Streptococcus peroris ATCC
           700780]
          Length = 662

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/655 (54%), Positives = 473/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND I+V+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIIVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YDLEML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIEAELEEQLALFEKEGKLLEAQRLKQRTEYDLEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEHEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 ALAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|65317138|ref|ZP_00390097.1| COG0556: Helicase subunit of the DNA excision repair complex
           [Bacillus anthracis str. A2012]
          Length = 669

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 16  FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 75

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 76  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 135

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 136 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 195

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 196 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 255

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 256 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 315

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 316 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 375

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 376 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 434

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 435 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 494

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 495 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 554

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 555 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 614

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 615 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 668


>gi|121308602|dbj|BAF43695.1| excision nuclease subunit B [Vibrio fischeri]
          Length = 676

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/673 (53%), Positives = 484/673 (71%), Gaps = 11/673 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + +++ ++Y P+GDQP AI  L +G+ +    Q LLGVTGSGKTFT+A VI    RP I+
Sbjct: 3   SAYELVSNYQPAGDQPQAIKTLNEGLENGLAHQTLLGVTGSGKTFTLANVIAHSGRPTII 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY E K FFP+NAVEYFVSY+DYYQPEAYVP TDT+IEK+SS+NE I++M
Sbjct: 63  MAHNKTLAAQLYGEMKAFFPNNAVEYFVSYFDYYQPEAYVPTTDTFIEKDSSVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+++SVS IYG+G  ++Y  M++ L+ GD + Q+++L  L + QYK
Sbjct: 123 RLSATKALLERKDAIIIASVSAIYGLGDPKAYLSMMLHLRRGDIINQRDMLRRLAELQYK 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RGTFRV G+ ++IFP+  E  A R+ MF +++E IS+F PLTG  I +++   
Sbjct: 183 RNDMAFERGTFRVRGEVLDIFPAESEHEAIRIEMFDDEVERISKFDPLTGSIIAKDMPRC 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK +L +R  EL +  +L+E QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPREQVLDAIEKIKVDLAIRQKELLENNKLVEEQRITQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GE PPTLF+Y+P+D LL +DESH+T+ QI  MY+GD  RK  L
Sbjct: 303 FCSGIENYSRYLSGRPEGEAPPTLFDYLPQDGLLIIDESHITVSQIGAMYKGDRSRKENL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +E+E+  G I EQ++RPTGL+DP
Sbjct: 363 VEYGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYEIEKSDGEIAEQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI +  +   R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ 
Sbjct: 423 VIEVRPVATQVDDLLSEIRIRTKNNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--- 734
           AARN+  K ILYAD IT S++ AI ET RRREKQ  HN+   I PQ++K+ + ++++   
Sbjct: 543 AARNLEGKAILYADKITGSMEKAIGETERRREKQQLHNEALGIVPQALKKDVADILELGD 602

Query: 735 ------PILLEDAATTNISID-AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                  ++      + ++ + A   S+S ++ +  ++ L  +M+  A +L FE+AA++R
Sbjct: 603 MTKNKRKVVAPKIKLSEVAEEGASYSSMSPQQLEKAIQKLESKMYQHAKDLEFEQAAQVR 662

Query: 788 DEIKRLKSSPYFQ 800
           DEI  L+      
Sbjct: 663 DEIDNLRKQFIVN 675


>gi|28898874|ref|NP_798479.1| excinuclease ABC subunit B [Vibrio parahaemolyticus RIMD 2210633]
 gi|260879452|ref|ZP_05891807.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus AN-5034]
 gi|260898249|ref|ZP_05906745.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus Peru-466]
 gi|260903248|ref|ZP_05911643.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus AQ4037]
 gi|32130285|sp|Q87MX6|UVRB_VIBPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|28807093|dbj|BAC60363.1| excinuclease ABC, subunit B [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088365|gb|EFO38060.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus Peru-466]
 gi|308093544|gb|EFO43239.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus AN-5034]
 gi|308106551|gb|EFO44091.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus AQ4037]
          Length = 676

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/671 (54%), Positives = 489/671 (72%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             +++ ++Y PSGDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRPAI+
Sbjct: 3   KVYELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  ESY QM++ L+ GD ++Q+++L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RG FRV G+ I+IFP+  +  A RV MF ++++ IS F PLTG    R++   
Sbjct: 183 RNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRY 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK EL++R  +L +  +L+E QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G I +Q++RPTGL+DP
Sbjct: 363 VEFGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ 
Sbjct: 423 ILEVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+  K ILYAD ITKS++ A+DET RRREKQ  +N+K  I PQ++K  I ++++   
Sbjct: 543 AARNIEGKAILYADNITKSMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIMELGD 602

Query: 738 LEDAA----------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           +  +           +           +S ++ +  +  L   M+  A +L FE AA  R
Sbjct: 603 ITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEISRLEAAMYQHAQDLEFELAAEKR 662

Query: 788 DEIKRLKSSPY 798
           DEI++L++   
Sbjct: 663 DEIEKLRAQFI 673


>gi|253698788|ref|YP_003019977.1| excinuclease ABC subunit B [Geobacter sp. M21]
 gi|251773638|gb|ACT16219.1| excinuclease ABC, B subunit [Geobacter sp. M21]
          Length = 662

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/663 (55%), Positives = 477/663 (71%), Gaps = 3/663 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ T + P GDQP AIA+L  G+   +  Q+LLGVTGSGKTFTMA+VI     P +
Sbjct: 1   MDKFELVTSFEPRGDQPRAIAELADGVLRGDPHQVLLGVTGSGKTFTMAQVIARCNCPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK  FP+NAVEYFVSYYDYYQPEAY+P +DT+IEK+SSIN++ID+
Sbjct: 61  VLAPNKTLAAQLYGEFKELFPNNAVEYFVSYYDYYQPEAYLPSSDTFIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            RHSATRSLL R D I+V+SVSCIYGIGS ESY +M ++ + GD V + E+L  LV  QY
Sbjct: 121 FRHSATRSLLTRRDVIIVASVSCIYGIGSPESYQEMQIRFREGDEVGRDEMLQRLVAIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RG+FRV GD++E+FP+H ++ A R+  FG+ ++ ISE  PL G +++ +   
Sbjct: 181 QRNDVDFHRGSFRVRGDTVEVFPAHDDERALRIEFFGDTVDAISEIDPLRGVQLQKLSRC 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SHYV  R TL  A++ I+ EL+ R+     +  LLEAQR+EQR  +D+EM+E  G
Sbjct: 241 AIYPASHYVASRQTLERAVELIRLELEERIRYFNAQNMLLEAQRIEQRTFFDIEMMEEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+  GR  GEPP TL +Y P+D LL +DESH+T+ Q+ GMYRGD  RK TL
Sbjct: 301 FCQGIENYSRHFDGRAAGEPPYTLIDYFPKDFLLVIDESHITVSQVGGMYRGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL F+E+      TI VSATP  +EL+Q  G++VEQ+IRPTGL+DP
Sbjct: 361 VNYGFRLPSALDNRPLTFQEFQKKLHQTIYVSATPADYELKQAGGVVVEQLIRPTGLIDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R A  QV+D+  E    A +G R+L+T LTKRMAE+LT+Y  E  IRVRY+HS++ 
Sbjct: 421 AIEVRPAAGQVDDLLHEARETAARGERVLVTTLTKRMAEELTDYYRELGIRVRYLHSDID 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T +R+EI+RDLRLG+FD+LVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQT GR
Sbjct: 481 TFQRMEILRDLRLGEFDLLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTCGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN++ +V++YAD +T S+Q AIDET RRR  Q  +N++H I P+SV+  I  V+    
Sbjct: 541 AARNLSGRVLMYADKVTGSMQAAIDETVRRRALQTAYNEEHGITPESVRRIIGNVLQAPE 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            +D  T   S +     +S K+ +  LK LRK+M  AA    FE AA +RD+IKRL+ + 
Sbjct: 601 EKDWVTVPASAE---EFVSAKELEKTLKRLRKEMLAAAKAQEFERAAELRDKIKRLEVAE 657

Query: 798 YFQ 800
             +
Sbjct: 658 IMR 660


>gi|297590309|ref|ZP_06948948.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus MN8]
 gi|297576608|gb|EFH95323.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312438814|gb|ADQ77885.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus TCH60]
          Length = 677

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 473/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 22  PFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 81

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 82  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 141

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 142 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 201

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I
Sbjct: 202 NDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAI 261

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 262 FPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 321

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 322 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVD 381

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 382 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHT-DKMVEQIIRPTGLLDPKI 440

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 441 EVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 500

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 501 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 560

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   + E
Sbjct: 561 RNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATV-E 619

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +    + +       ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 620 NDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAE 676


>gi|120553961|ref|YP_958312.1| excinuclease ABC subunit B [Marinobacter aquaeolei VT8]
 gi|120323810|gb|ABM18125.1| Excinuclease ABC subunit B [Marinobacter aquaeolei VT8]
          Length = 685

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/674 (55%), Positives = 487/674 (72%), Gaps = 14/674 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIA L+ GI S    Q LLGVTGSGKTFT+A V++ +QRP I+MA
Sbjct: 13  FRVDSPYQPAGDQPKAIAGLVDGIESGLAHQTLLGVTGSGKTFTIANVVQQVQRPTIIMA 72

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR 
Sbjct: 73  HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEHIEQMRL 132

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G  +SY +M++ L  GD ++Q+ +L  L + QY R 
Sbjct: 133 SATKALLERPDAIIVATVSSIYGLGDPQSYLKMMLHLDRGDQMDQRYILRRLAELQYTRN 192

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   R  +RV GD I++FP+  +  A R+ +F +++E +S F PLTG+ +R V  + IY
Sbjct: 193 DIEFHRANYRVRGDVIDVFPAESQKEAIRIELFDDEVENLSYFDPLTGEVLRRVPRVTIY 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR T+  A++ IK+EL +RL +L    RL+EAQRLE+R  YD+EM+   G C 
Sbjct: 253 PKSHYVTPRQTVLDAVEDIKQELDVRLQQLRDNNRLVEAQRLEERTRYDIEMMLELGYCN 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRNPGE PPTL++Y+P ++LL VDESHVTIPQI  MY+GD  RK TL EY
Sbjct: 313 GIENYSRYLSGRNPGEAPPTLYDYLPPNALLVVDESHVTIPQIGAMYKGDRSRKETLVEY 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEEW  + P  I VSATPG++E E   G +VEQ++RPTGL+DP +E
Sbjct: 373 GFRLPSALDNRPMRFEEWERIAPQMIFVSATPGNYEAEHA-GQVVEQVVRPTGLLDPEIE 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI+       R+L+T LTKRMAEDLT++L E +IRVRY+HS++ T+E
Sbjct: 432 VRPASTQVDDLLSEIHQRVGVNERVLVTTLTKRMAEDLTDFLMEHDIRVRYLHSDIDTVE 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 492 RVEIIRDLRRGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           NVN K ILY D IT S+Q AIDET RRR KQ+ HN++H I P  + +KI ++++      
Sbjct: 552 NVNGKAILYGDRITGSMQRAIDETERRRAKQMAHNEEHGITPIGLNKKIADIMEGAAGGG 611

Query: 739 -----------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                      + AA        +  + S +     +  L  +M+ AA +L+FE AAR+R
Sbjct: 612 GRGRRKAERPGQKAAEEAEDYRVKVGNRSPEDVLKEVAKLEDEMYKAAADLDFETAARLR 671

Query: 788 DEIKRLKSSPYFQG 801
           D+I  LK +    G
Sbjct: 672 DQISELKEAALRTG 685


>gi|197335978|ref|YP_002155699.1| excinuclease ABC, B subunit [Vibrio fischeri MJ11]
 gi|197317468|gb|ACH66915.1| excinuclease ABC, B subunit [Vibrio fischeri MJ11]
          Length = 676

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/673 (53%), Positives = 484/673 (71%), Gaps = 11/673 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + +++ ++Y P+GDQP AI  L +G+ +    Q LLGVTGSGKTFT+A VI    RP I+
Sbjct: 3   SAYELVSNYQPAGDQPQAIKTLNEGLENGLAHQTLLGVTGSGKTFTLANVIAHSGRPTII 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY E K FFP+NAVEYFVSY+DYYQPEAYVP TDT+IEK+SS+NE I++M
Sbjct: 63  MAHNKTLAAQLYGEMKAFFPNNAVEYFVSYFDYYQPEAYVPTTDTFIEKDSSVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+++SVS IYG+G  ++Y  M++ L+ GD + Q+++L  L + QYK
Sbjct: 123 RLSATKALLERKDAIIIASVSAIYGLGDPKAYLSMMLHLRRGDIINQRDMLRRLAELQYK 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RGTFRV G+ ++IFP+  E  A R+ MF +++E IS+F PLTG  I +++   
Sbjct: 183 RNDMAFERGTFRVRGEVLDIFPAESEHEAIRIEMFDDEVERISKFDPLTGSIITKDMPRC 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK +L +R  EL +  +L+E QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPREQVLDAIEKIKVDLAIRQKELLENNKLVEEQRITQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GE PPTLF+Y+P+D LL +DESH+T+ QI  MY+GD  RK  L
Sbjct: 303 FCSGIENYSRYLSGRPEGEAPPTLFDYLPQDGLLIIDESHITVSQIGAMYKGDRSRKENL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +E+E+  G I EQ++RPTGL+DP
Sbjct: 363 VEYGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYEIEKSDGEIAEQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI +  +   R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ 
Sbjct: 423 VIEVRPVTTQVDDLLSEIRIRTKSNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--- 734
           AARN+  K ILYAD IT S++ AI ET RRREKQ  HN+   I PQ++K+ + ++++   
Sbjct: 543 AARNLEGKAILYADKITGSMEKAIGETERRREKQQLHNEALGIVPQALKKDVADILELGD 602

Query: 735 ------PILLEDAATTNISID-AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                  ++      + ++ + A   S+S ++ +  ++ L  +M+  A +L FE+AA++R
Sbjct: 603 MTKNKRKVVAPKIKLSEVAEEGASYSSMSPQQLEKAIQKLESKMYQHAKDLEFEQAAQVR 662

Query: 788 DEIKRLKSSPYFQ 800
           DEI  L+      
Sbjct: 663 DEIDNLRKQFIVN 675


>gi|220917778|ref|YP_002493082.1| excinuclease ABC, B subunit [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955632|gb|ACL66016.1| excinuclease ABC, B subunit [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 699

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/655 (55%), Positives = 474/655 (72%), Gaps = 1/655 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +Q+ + P+GDQP AI +L  G+   E+ Q+LLGVTGSGKTFT+A V+  ++RP +V+
Sbjct: 2   PFDLQSAFQPTGDQPRAITELTDGLRRGERHQVLLGVTGSGKTFTVANVVAEVKRPTLVI 61

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQLY+EFK  FP  AV YFVSYYDYYQPEAYVP TDTYIEK+SSIN++IDRMR
Sbjct: 62  AHNKTLAAQLYAEFKELFPTAAVHYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDRMR 121

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT +LL RND ++V+SVSCIYG+G+ E+Y  ++ +L+ G    +   + SL+  QY+R
Sbjct: 122 HAATHALLTRNDVLIVASVSCIYGLGTAEAYHGLLQRLERGQEFLRDRFIRSLIDIQYER 181

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+   RGTFRV GD+IE+FP + ED A R+  FG+ +E I EF PL G  +  ++ + I
Sbjct: 182 NDLDFHRGTFRVRGDTIEVFPPYEEDRAVRIEFFGDVVESIHEFDPLRGATLAELDKVAI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           + NSHYV+       A+  ++EEL+ RL EL+   +L+EAQRLEQR  +DLEMLE  G C
Sbjct: 242 FPNSHYVSAPEVRARAIAGVREELRERLGELKAANKLVEAQRLEQRTMFDLEMLEQMGFC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+GR  G+PPP L +Y PED LL +DESH T+PQI  MYRGD  RK TL E
Sbjct: 302 PGIENYSRWLSGRKAGDPPPCLLDYFPEDFLLVIDESHQTVPQIGSMYRGDRSRKETLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+  L    I VSATP ++ELEQ QG++VEQ+IRPTGLVDP +
Sbjct: 362 FGFRLPSALDNRPLKFEEFQALVRQAIYVSATPAAYELEQAQGVVVEQLIRPTGLVDPHI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   +QV+D+  E+   A+ G R+L+T LTKRMAEDLTEY  +  +R RY+HS++ TL
Sbjct: 422 EVRPVGSQVDDLLGEVRKRAEAGERVLVTTLTKRMAEDLTEYFTDVGVRCRYLHSDIDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  +IRDLR G+FDVL+GINLLREGLDIPE  LVA+LDADKEGFLRS  SLIQTIGRAA
Sbjct: 482 ERSAVIRDLRRGEFDVLIGINLLREGLDIPEVSLVAVLDADKEGFLRSAVSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN +V+LYAD IT S++ AIDET RRRE Q  +N +H I P +VK  I ++   ++  
Sbjct: 542 RNVNGRVLLYADAITASMRQAIDETGRRREIQERYNAEHGITPTTVKRNISDLGMAVVEA 601

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           D  T  ++ +        ++    + +L ++M  AA  L FE+AA++RD ++ LK
Sbjct: 602 DYVTVPLAAEEGAEYR-PEQLPEIVAALEREMQDAARALEFEKAAQLRDRVQALK 655


>gi|253580706|ref|ZP_04857970.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848077|gb|EES76043.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 662

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/662 (52%), Positives = 463/662 (69%), Gaps = 3/662 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI +L++G     + + LLGVTGSGKTFTMA VI  + +P +
Sbjct: 1   MDHFELHSEYKPTGDQPQAIERLVRGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID+
Sbjct: 61  ILAHNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT ++ ER D +V+SSVSCIYG+GS + +  M++ L+ G + ++ E++  L+  QY
Sbjct: 121 LRLSATAAMSERKDVVVISSVSCIYGLGSPQEFFDMMISLRPGMTKDRDEVIRELIDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   R TFRV GD++EIFP++  D A RV  FG++I+ ISE   LTG+       I
Sbjct: 181 TRNEMDFHRSTFRVRGDTLEIFPANSSDTAVRVEFFGDEIDRISEIDVLTGEIKCQRSHI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV P   +  A   I+EELK R+   + E +LLEAQR+ +R  +D+EM++ TG
Sbjct: 241 SIFPASHYVVPAEQIQRAAVAIEEELKERVEYFKSEDKLLEAQRISERTNFDIEMMKETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L+G  PG+PP TL +Y  +D LL +DESH+T+PQ+ GMY GD  RK TL
Sbjct: 301 FCSGIENYSRHLSGLKPGQPPYTLLDYFGDDFLLIIDESHITVPQVGGMYAGDQSRKQTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL FEE+       + VSATPG +E +  + +  EQIIRPTGL+DP
Sbjct: 361 VDYGFRLPSAKDNRPLSFEEFESKLDQVMFVSATPGQYEYDH-ELLRAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++D+  E+N    +  +IL+T LTKRMAEDLTEY+ E  IRVRY+HS++ 
Sbjct: 420 KVEVRPIEGQIDDLIGEVNKEVSKKHKILITTLTKRMAEDLTEYMKEVGIRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER  IIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERARIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD +T S+  AI ET RRR  Q  +NK+H I P ++K+ + ++I   +
Sbjct: 540 AARNSEGHVIMYADNMTDSMHKAITETNRRRTIQEAYNKEHGITPTTIKKAVRDLI--AV 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            +  A T + +     S+++K+    +  + KQM  AA +LNFE+AA +RD++  LK + 
Sbjct: 598 SKAVAETEVRLQKDPESMTRKELTKLIAQVEKQMRAAAADLNFEQAAELRDKMIDLKKNL 657

Query: 798 YF 799
             
Sbjct: 658 DI 659


>gi|167623863|ref|YP_001674157.1| excinuclease ABC subunit B [Shewanella halifaxensis HAW-EB4]
 gi|167353885|gb|ABZ76498.1| excinuclease ABC, B subunit [Shewanella halifaxensis HAW-EB4]
          Length = 667

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/662 (55%), Positives = 477/662 (72%), Gaps = 2/662 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ Y P+GDQP AI +L+ G+ S    Q LLGVTGSGKTFT+A VIE M RP I+
Sbjct: 4   SVFQLESMYKPAGDQPTAINKLVDGLESGVACQTLLGVTGSGKTFTIANVIEKMSRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP T T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTGTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  ++Y +M++ L+ G ++EQ+++L  L + QY 
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPKAYMKMLLHLREGGNMEQRDILKRLSELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGT+RV G+ I+IFP+  +  A R+ +F ++IE +S F PLTG  ++ +  I 
Sbjct: 184 RNDIELQRGTYRVRGEVIDIFPADSDKNAIRIELFDDEIERLSLFDPLTGHIVKRIARIT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYVTPR ++  A + IKEEL+ R  +L    +L+E QR+ +R+ YDLEM+   G 
Sbjct: 244 VYPKSHYVTPRESILAATEEIKEELRERKKQLLDLNKLIEEQRITERVQYDLEMMTELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  G+ PPTL +Y+PED LL +DESHVT+PQI  MY+GD  RK  L 
Sbjct: 304 CSGIENYSRYLSGRASGDGPPTLLDYLPEDGLLIIDESHVTVPQIGAMYKGDRSRKMNLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P +I VSATP ++E+E+  G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEALMPQSIFVSATPSAYEIEKSDGEIAEQVVRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI        R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 IEVRPVSTQVDDLLSEIGKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVL+GINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGVFDVLIGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILY D ITKS+  AI ET RRRE Q +HN  + I P+ V +KI +V+D    
Sbjct: 544 ARNVNGKVILYGDRITKSMDKAITETNRRREMQHQHNLDNGIIPKGVIKKITDVMDVGDH 603

Query: 739 E--DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           E  D+      I+ +            +  L KQMH  A NL FEEAA IRD++ RL+  
Sbjct: 604 EYVDSERGVAEIEGEYHVAKPADISHDIDRLEKQMHEHAKNLEFEEAAAIRDKVGRLREQ 663

Query: 797 PY 798
             
Sbjct: 664 FI 665


>gi|254669942|emb|CBA04546.1| excinuclease ABC subunit B [Neisseria meningitidis alpha153]
          Length = 699

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/665 (53%), Positives = 481/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP+AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 33  SPFKLHQPFPPAGDQPSAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 92

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 93  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 152

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ RND I+V++VS IYGIG    Y QM++ +K GD++ Q++++++LV  QY+
Sbjct: 153 RLSATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIAQRDIIATLVSMQYE 212

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    
Sbjct: 213 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYT 272

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G 
Sbjct: 273 VFPSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGF 332

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 333 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 392

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 393 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 451

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 452 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 511

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 512 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 571

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 572 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 631

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 632 EEDSGKGRRQGKNKVKVGKIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIK 691

Query: 795 SSPYF 799
               F
Sbjct: 692 EGLLF 696


>gi|325138246|gb|EGC60815.1| excinuclease ABC, B subunit [Neisseria meningitidis ES14902]
          Length = 675

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/665 (53%), Positives = 479/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ + +  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSSKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSLS----KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+           ++ +S    ++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDGGKGRRQGKNKVKVSEIHNEEDAVKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIK 667

Query: 795 SSPYF 799
               F
Sbjct: 668 EGLLF 672


>gi|78486095|ref|YP_392020.1| excinuclease ABC subunit B [Thiomicrospira crunogena XCL-2]
 gi|123555134|sp|Q31ES7|UVRB_THICR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|78364381|gb|ABB42346.1| Excinuclease ABC subunit B [Thiomicrospira crunogena XCL-2]
          Length = 678

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/672 (55%), Positives = 494/672 (73%), Gaps = 12/672 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL++G+   E  Q LLGVTGSGKTFTMA VI  +QRP I++A
Sbjct: 5   FEIVSQYEPAGDQPVAITQLVEGLEDGEAFQTLLGVTGSGKTFTMANVIAKVQRPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K+FFPHNAVEYFVSYYDYYQPEAYVP +DTYI K+SS+NEQI+++R 
Sbjct: 65  HNKTLAAQLYGEMKSFFPHNAVEYFVSYYDYYQPEAYVPASDTYIAKDSSVNEQIEQLRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D +++++VS IYG+G  + Y +MI+QL++GD++ Q+++L  L   QY R 
Sbjct: 125 SATKALMERKDVVLIATVSAIYGLGDPDQYLKMILQLRLGDTISQRDILQQLTTMQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD I++FP+  E+ A R+ +F ++++ ++ F PLTG+ +     I +Y
Sbjct: 185 DVELWRGCFRVRGDVIDVFPAEAEEYAVRIELFDDEVDSLAWFDPLTGEVLTRPTRITVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  +   ++ +K EL  RL EL    +L+EAQRLE+R   D+EM+   G C 
Sbjct: 245 PKSHYVTPKERVLQTIEQVKVELVSRLEELRSLNKLVEAQRLEERTRLDIEMMSELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTL +Y+P+++L+F+DESHVTIPQI GMY+GD  RK  L  +
Sbjct: 305 GIENYSRYLSGRASGEPPPTLLDYLPKNALMFIDESHVTIPQIGGMYKGDRSRKENLVTF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRP+RF+E+  + P TI VSATPG +E E  +  IVEQ++RPTGL+DP +E
Sbjct: 365 GFRLPSAMDNRPMRFDEFEKIMPQTIFVSATPGKYEAEH-ESKIVEQVVRPTGLLDPVLE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI L  ++  R+L+T LTKRMAE+LTEYL E N+RVRY+HS++ T+E
Sbjct: 424 VRPALTQVDDLLGEIRLRVEKEERVLVTTLTKRMAENLTEYLEEHNVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736
           NV  K ILYAD ITKS+Q AIDET RRR KQ++HN +  I PQ + +KI ++++      
Sbjct: 544 NVAGKAILYADKITKSMQKAIDETERRRAKQIQHNTEQGITPQKLNKKITDILEDSPYAP 603

Query: 737 -------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                   L+ A         +   ++  +  + +K + KQM+ AA +L+FE AA++RD+
Sbjct: 604 KPGASAAKLKAAEADGEYSPQEMQRMTPAQLASEIKRMEKQMYQAAKDLDFELAAKLRDD 663

Query: 790 IKRLKSSPYFQG 801
           +KRLKSS    G
Sbjct: 664 LKRLKSSMVGVG 675


>gi|328474566|gb|EGF45371.1| excinuclease ABC subunit B [Vibrio parahaemolyticus 10329]
          Length = 676

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/671 (54%), Positives = 490/671 (73%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             +++ ++Y PSGDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRPAI+
Sbjct: 3   KVYELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  ESY QM++ L+ GD ++Q+++L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RG FRV G+ I+IFP+  +  A RV MF ++++ IS F PLTG    R++   
Sbjct: 183 RNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRY 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK EL++R  +L +  +L+E QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G I +Q++RPTGL+DP
Sbjct: 363 VEFGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ 
Sbjct: 423 ILEVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+  K ILYAD+ITKS++ A+DET RRREKQ  +N+K  I PQ++K  I ++++   
Sbjct: 543 AARNIEGKAILYADSITKSMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIMELGD 602

Query: 738 LEDAA----------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           +  +           +           +S ++ +  +  L   M+  A +L FE AA  R
Sbjct: 603 ITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEISRLEAAMYQHAQDLEFELAAEKR 662

Query: 788 DEIKRLKSSPY 798
           DEI++L++   
Sbjct: 663 DEIEKLRAQFI 673


>gi|304395751|ref|ZP_07377634.1| excinuclease ABC, B subunit [Pantoea sp. aB]
 gi|304357045|gb|EFM21409.1| excinuclease ABC, B subunit [Pantoea sp. aB]
          Length = 673

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/663 (55%), Positives = 468/663 (70%), Gaps = 8/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V+A
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVE+FVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEFFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIDSVVPRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L +  +LLE QR+ QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEDIKVELADRRRVLLENNKLLEEQRITQRTQFDLEMMSELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+ R PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSARGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG +ELE+    +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGKYELEKSGDEVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI        R+L+TVLTKRMAEDLTEYL E   +VRY+HS++ T+E
Sbjct: 425 VRPVGTQVDDLLSEIRQRVAINERVLVTVLTKRMAEDLTEYLTEHGEKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           N+N K ILY D IT S+  AI+ET RRREKQ  HN+++ I PQ + +KI ++++      
Sbjct: 545 NINGKAILYGDKITPSMARAIEETERRREKQQLHNEQNGIVPQGLNKKITDILELGNNIV 604

Query: 735 --PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                 + A        A    L+ +  +  +  L  QM   A NL FE+AA +RD++  
Sbjct: 605 KTRGKAKPARPGEAQALADFKLLTPQALQKKIHELEGQMQQHAQNLEFEQAANVRDQLHE 664

Query: 793 LKS 795
           L++
Sbjct: 665 LRT 667


>gi|325919999|ref|ZP_08181978.1| Excinuclease ABC subunit B [Xanthomonas gardneri ATCC 19865]
 gi|325549510|gb|EGD20385.1| Excinuclease ABC subunit B [Xanthomonas gardneri ATCC 19865]
          Length = 673

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/668 (54%), Positives = 488/668 (73%), Gaps = 10/668 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A VI+ +Q+P +VMA
Sbjct: 5   FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVIQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L +G+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRKLIRHLSDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IK+ELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKDELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G I E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEITELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI+   + G R+L+T LTKRM+E+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEIHERIKLGDRVLVTTLTKRMSENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV+  I ++++    + 
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVQRPISDIMEGAREDA 604

Query: 741 AATTNISIDAQ----------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           A        ++            ++   +    LKSL ++M+  A +L FE AA+IRD+I
Sbjct: 605 AEKKAGKGRSKSRQIAEDTVDYRAMGPAQIAGKLKSLEQKMYQHAKDLEFEAAAQIRDQI 664

Query: 791 KRLKSSPY 798
           ++LK++  
Sbjct: 665 QKLKAASL 672


>gi|284097822|ref|ZP_06385805.1| UvrABC system protein B [Candidatus Poribacteria sp. WGA-A3]
 gi|283830664|gb|EFC34791.1| UvrABC system protein B [Candidatus Poribacteria sp. WGA-A3]
          Length = 668

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/664 (52%), Positives = 480/664 (72%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  FQ+++++ P GDQ  AI  L +G+H+ ++ Q+LLGVTGSGKTFTMA VI  +Q+P +
Sbjct: 1   MNTFQLESEFSPKGDQQQAIDALTEGVHAGKQHQVLLGVTGSGKTFTMANVIAKIQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+  NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAY+P TDTYI K++SIN+ ID+
Sbjct: 61  VVVHNKTLAAQLYQEFKSFFPQNAVEYFVSYYDYYQPEAYIPSTDTYIAKDASINDTIDQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRH+AT +LLER+D ++V+SVSCIYG+GS E Y  M++ L+ G ++ ++ +L+ LV  QY
Sbjct: 121 MRHAATSALLERDDILIVASVSCIYGLGSPEVYHGMLLYLEEGMTIRREAILAKLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RGTFR  GD IEIFP+  +    RV +FG+ +E I+E  PLTG+ +  +  +
Sbjct: 181 SRNDVELQRGTFRARGDVIEIFPAASDSNTVRVELFGDVVESIAEIDPLTGRSLGRLSKV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SHYV      + A++ I+EEL  RL+   +  +LLEAQR+EQR  +DLEM+   G
Sbjct: 241 PIYPKSHYVIAPDRYDRALQGIEEELDERLVYFRRHNQLLEAQRVEQRTRFDLEMIRAMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L+GR PGEPPPTL +Y P+D LL VDESHVT+PQ  GMY GD  RK TL
Sbjct: 301 YCHGIENYSRHLSGRAPGEPPPTLLDYFPKDYLLIVDESHVTVPQFGGMYEGDHSRKKTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS MDNRPL+F+E+  +    + VSATPG +EL      +VEQIIRPTGL+DP
Sbjct: 361 VEYGFRLPSAMDNRPLKFQEFERVMNRVMYVSATPGPYELRHAGESVVEQIIRPTGLMDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E++ A+ QV+D+  E+  +  +G R+L+T LTKRMAEDLTEY ++  ++VRY+HS+++
Sbjct: 421 VLEVKPAKGQVDDLLQEVKASIARGFRVLVTTLTKRMAEDLTEYYHDLGLKVRYLHSDIQ 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRDLR G FDVLVGINLLREGLD+PE  LV +LDADKEGFLR   +LIQT GR
Sbjct: 481 TLERAEIIRDLRRGVFDVLVGINLLREGLDLPEVALVGVLDADKEGFLRGHRALIQTAGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   KVILY DTIT S+++ I+ET+RRR+ Q ++N+++ I P+++K++I ++   + 
Sbjct: 541 AARNSEGKVILYGDTITDSMKVTIEETSRRRQIQADYNRRNGITPETIKKRIHDLDYHVA 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             D    +I+ + + +  ++   +  + +L ++M  AA  L FE AA++RD I+ L+   
Sbjct: 601 EADYVDVSIAAEEEAVYTTEADVEKTVAALEQEMKAAAKMLEFERAAKLRDRIRALRQQE 660

Query: 798 YFQG 801
              G
Sbjct: 661 LLFG 664


>gi|259047451|ref|ZP_05737852.1| excinuclease ABC subunit B [Granulicatella adiacens ATCC 49175]
 gi|259035642|gb|EEW36897.1| excinuclease ABC subunit B [Granulicatella adiacens ATCC 49175]
          Length = 660

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/662 (53%), Positives = 465/662 (70%), Gaps = 2/662 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++   Y P GDQP AI +L++G++   K Q LLG TG+GKTFT+A VI+ + +P +
Sbjct: 1   MNEFKLVAPYTPQGDQPQAIQELVEGLNKGVKEQTLLGATGTGKTFTIANVIKEVNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYIEKESS+N++ID+
Sbjct: 61  VLAHNKTLAGQLYGELKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKESSVNDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +LLER D IVV+SVS +YG+ + E Y   ++ L+ G  +E+ ELL  LV+ Q+
Sbjct: 121 LRHSATSALLERRDVIVVASVSSMYGLVNPEDYRDHVLSLREGMEIERDELLRRLVEMQF 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D    RGTFRV GD +EIF +  +  A+R+  FG++IE I E   LTG+    VE +
Sbjct: 181 ERNDYDFRRGTFRVRGDVVEIFLAGHDATAFRIEFFGDEIEAIKEVDVLTGEIKATVEHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  +H+V     ++ A+  IKEEL +RL EL     LLEAQRLEQR  YD+EML   G
Sbjct: 241 PIFPATHFVANEDQISKAVSTIKEELALRLKELRDNNELLEAQRLEQRTNYDIEMLLEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR++ GR PG+PP TL ++ PED+L  VDESH+T+ QI GMY GD  RK  L
Sbjct: 301 YCNGIENYSRHMDGRKPGQPPYTLLDFFPEDALFVVDESHITMSQIRGMYNGDRARKEQL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPLRFEE+    P  I +SATPG +EL     +  EQIIRPTGL+DP
Sbjct: 361 IKYGFRLPSALDNRPLRFEEFEAKVPQIIYISATPGPYELAHTPKVT-EQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           PVE+R  + Q++D+  EINL  ++  R+ +T LTK+M+EDLT+YL E  I+V+Y+HS++K
Sbjct: 420 PVEVRPIKGQIDDLISEINLRVERNERVFITTLTKKMSEDLTDYLEEVGIKVKYLHSDIK 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIR+LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ +L+QTIGR
Sbjct: 480 TLERTEIIRNLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERALVQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N +VI+YAD IT S+Q AIDET RRR  Q  +NK+H I P+++ + I ++I    
Sbjct: 540 AARNANGRVIMYADKITDSMQRAIDETNRRRSVQEAYNKEHGIVPKTIVKNIRDLIAITH 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             +      +       +S+++ +  ++ L   M  AA  L+FE+AA +RD I  L++  
Sbjct: 600 EVEKEDAPSTAK-DFKKMSQEQRREAIELLELDMRAAAKALDFEKAADLRDVILELRAEY 658

Query: 798 YF 799
             
Sbjct: 659 KL 660


>gi|83647651|ref|YP_436086.1| excinuclease ABC subunit B [Hahella chejuensis KCTC 2396]
 gi|83635694|gb|ABC31661.1| excinuclease ABC, B subunit [Hahella chejuensis KCTC 2396]
          Length = 670

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/668 (56%), Positives = 488/668 (73%), Gaps = 10/668 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  FQ++ +Y P+GDQP AIA L+ G+      Q LLGVTGSGKTFTMA VI  MQRPA+
Sbjct: 1   MQKFQLKANYQPAGDQPGAIAGLVDGLRDGLLHQTLLGVTGSGKTFTMANVIAEMQRPAM 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           VMA NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++
Sbjct: 61  VMAHNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++L+ER D ++V++VS IYG+G  +SY +M++ L  GD V+Q+ LL  L + QY
Sbjct: 121 MRLSATKALMERKDVVIVATVSAIYGLGDPQSYKKMMLHLDRGDKVDQRSLLRRLAELQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + R  +RV GD I++FP+  E  A R+ +F ++IE +S F PLTG+  R V   
Sbjct: 181 TRNDLELHRANYRVRGDVIDVFPAESESDALRIELFDDEIESLSWFDPLTGEVYRRVPRA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HY TPR  +  A + IK EL+ RL +     +LLEAQRLE+R  YDLEM+   G
Sbjct: 241 TIYPKTHYATPRQVILDATEQIKTELQERLQQFRGSSKLLEAQRLEERTRYDLEMMYELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GEPPPTLF+Y+P D+LLF+DESHVTIPQI  MYRGD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRQAGEPPPTLFDYLPSDALLFIDESHVTIPQIGAMYRGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPLRF+EW  L P  I VSATPG++E +  QG +VEQ++RPTGLVDP
Sbjct: 361 VSYGFRLPSALDNRPLRFDEWERLAPQMIFVSATPGNYEADH-QGQVVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+  A TQV+D+  +I+   ++  R+L+T LTKRMAEDLT++L ++ +RVRY+HS+V+
Sbjct: 420 DIEVLPASTQVDDLLGQIHDRVERNERVLVTTLTKRMAEDLTDFLLDKGVRVRYLHSDVE 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  K ILYAD IT S+Q A+DET RRR KQ+ +N++H + P+ + +K+ ++++   
Sbjct: 540 AARNVRGKAILYADKITGSMQRAMDETERRRNKQISYNEEHGVIPRGLDKKVADIMEGAR 599

Query: 738 LEDA---------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  +         A T  S + +  + + ++    L+ L   M+ AA NL FE+AA++RD
Sbjct: 600 VPGSKKGASQRRVAETASSYNVEAEARTPQEYAKMLQKLETAMYEAARNLEFEKAAQLRD 659

Query: 789 EIKRLKSS 796
           ++K LK  
Sbjct: 660 QLKELKEK 667


>gi|327441317|dbj|BAK17682.1| helicase subunit of the DNA excision repair complex [Solibacillus
           silvestris StLB046]
          Length = 660

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 472/656 (71%), Gaps = 1/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ Y P+GDQP AI QL++G+   ++ Q LLG TG+GKTFT++ VI+ + +P +VMA
Sbjct: 5   FTIKSAYQPAGDQPEAIKQLIQGVKEGKRHQTLLGATGTGKTFTISNVIKEVNKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP NAVEYFVSYYDY+QPEAYVP+TDTYIEK+SSINE+ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPDNAVEYFVSYYDYFQPEAYVPQTDTYIEKDSSINEEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+G+ E Y +M+V ++ G  +E+ +LL  LV  QY+R 
Sbjct: 125 SATTALFERKDVIIIASVSCIYGLGNPEEYREMVVSIRTGMEIERNQLLRKLVDIQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   R+  FG++++ I E   LTG+ + + + + I+
Sbjct: 185 DINFTRGTFRVRGDVVEIFPASRDEHCIRIEFFGDEVDRIREVDALTGEILGDRQHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL  L  E RLLEAQRLEQR  YDLEM++  G C 
Sbjct: 245 PASHFVTREEKMKIAIENIEKELEERLTTLRSEDRLLEAQRLEQRTNYDLEMMKEMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED LL VDESHVT+PQ+ GMY GD  RK  L E+
Sbjct: 305 GIENYSRHLTLREAGATPYTLLDYFPEDFLLVVDESHVTLPQVRGMYNGDQARKGVLVEH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELE     +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLMFDEFQSKVSQAIYVSATPGPYELEHTPE-MVEQIIRPTGLLDPTID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+ DEI+   ++  R L+T LTK+M+EDL+ YL E  ++V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLIDEIHERIRRNERTLVTTLTKKMSEDLSSYLKEMGLKVEYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIR+LR G +DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRELRKGTYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YA+ +T S+  AI ET RRRE Q+ +N++H I P+++ +KI ++I      +
Sbjct: 544 NSNGHVIMYANNMTDSMTKAISETKRRRETQMAYNEEHGITPKTIIKKIPDIIRATQAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T I+       L+KK+ +  + +L+ +M  AA  L+FE AA +RD I  LK+ 
Sbjct: 604 QEETYITKVTGGKKLTKKELEKLVATLQVEMKEAAKALDFERAAELRDMIFELKAE 659


>gi|330810809|ref|YP_004355271.1| UvrABC system protein B (Excinuclease ABC, subunit B) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327378917|gb|AEA70267.1| UvrABC system protein B (Excinuclease ABC, subunit B) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 671

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/670 (54%), Positives = 482/670 (71%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI  +++GI +    Q LLGVTGSGKTF++A VI  +QRP +
Sbjct: 1   MSEFQLVTRFQPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQIQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+I+P+  +  A R+ +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A++ IK EL+ RL  L    +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLLDAIEGIKVELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTL++Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPAGAPPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G +VEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWESVSPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R A TQV+D+  EI+       R+L+T LTKRMAEDLT+YL +  +RVRY+HS++ 
Sbjct: 420 QVEVRPALTQVDDLLSEISKRVAVEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S++ AI ET RRR+KQ+  N  + I P+ V + + ++++   
Sbjct: 540 AARNLNGRAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVFKDVADIMEGAT 599

Query: 738 LED---------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +           A     S   +    S  +    ++ L ++M+  A +L FE AA++RD
Sbjct: 600 VPGSRSKKRKGMAKAAEESARYEAELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQLRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EIGKLRERLL 669


>gi|169824598|ref|YP_001692209.1| UvrABC system protein B [Finegoldia magna ATCC 29328]
 gi|303235209|ref|ZP_07321828.1| excinuclease ABC, B subunit [Finegoldia magna BVS033A4]
 gi|167831403|dbj|BAG08319.1| UvrABC system protein B [Finegoldia magna ATCC 29328]
 gi|302493696|gb|EFL53483.1| excinuclease ABC, B subunit [Finegoldia magna BVS033A4]
          Length = 656

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/656 (52%), Positives = 470/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L  G+ + +  Q+L GVTGSGKTFTMA +I+ +QRP +V+A
Sbjct: 3   FKLHSKFKPTGDQPQAIDKLANGLENGKNHQILKGVTGSGKTFTMANIIQKVQRPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL SEF+ FFP NAVE+FVSYYDYYQPEAYV ++DTYIEK+SSINE++D++RH
Sbjct: 63  HNKTLAYQLASEFREFFPENAVEFFVSYYDYYQPEAYVVQSDTYIEKDSSINEELDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+VSSVSCIYG+G    Y  +++ L+ G   ++ E++  L+  QY R 
Sbjct: 123 SATMSLFERRDVIIVSSVSCIYGLGDPIDYENLVISLRPGMEKDRTEVMKKLIDIQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GDS++IFP+   + + R+  FG++I+ I+E   LTG+ +     + IY
Sbjct: 183 DINFTRGTFRVRGDSLDIFPASSGEKSVRIEFFGDEIDRITEIDALTGEIVGERNHVAIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T +  +  A+  I+EEL+ RL   +   +LLEAQRLEQR  YD+EML+  G C 
Sbjct: 243 PASHYATTQKKVEKAIVTIEEELEDRLKYFKDHNKLLEAQRLEQRTRYDIEMLKEMGFCT 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++ R PG  P TL +Y P+D +  +DESHVT+PQI GMY GD  RK +L +Y
Sbjct: 303 GIENYSRHMSQRKPGSRPYTLIDYFPKDFVTMIDESHVTVPQIGGMYEGDRSRKTSLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  +    I VSATPG +E  +    +VEQ+IRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLKFSEFESMMNQVIYVSATPGKYEKAKTNE-VVEQVIRPTGLLDPKIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN   ++G R+L+T LTK+M+EDLT YL + +I+V Y+HS++ T+E
Sbjct: 422 VRPTKGQIDDLVSEINKTIEKGERVLITTLTKKMSEDLTRYLEDLDIKVTYLHSDIDTIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR GK+DVLVGINLLREGLD+PE  L+AILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RMEIIRDLREGKYDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+Y DTIT+S+ +AI ET RRRE Q E+NK+HNI P ++ + + + I    + +
Sbjct: 542 NSNGHVIMYGDTITRSMDVAITETNRRREIQEEYNKEHNITPTTINKSVRKRIQNTFVAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 +    +   SK + +  +++L  +M  AA+ L+FE AA +RD+I+ LK++
Sbjct: 602 ENENYDANKVTEF--SKDEIEVIIENLNTEMLKAAEELDFERAATLRDQIRNLKNT 655


>gi|229020376|ref|ZP_04177132.1| UvrABC system protein B [Bacillus cereus AH1273]
 gi|229026605|ref|ZP_04182948.1| UvrABC system protein B [Bacillus cereus AH1272]
 gi|228734690|gb|EEL85341.1| UvrABC system protein B [Bacillus cereus AH1272]
 gi|228740911|gb|EEL91153.1| UvrABC system protein B [Bacillus cereus AH1273]
          Length = 658

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/657 (54%), Positives = 480/657 (73%), Gaps = 3/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ ++Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VM
Sbjct: 4   PFEIISEYSPQGDQPGAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSE K+FFP+N+VEYFVSYYDYYQPEAYVP TDT+IEK++ IN++ID++R
Sbjct: 64  AHNKTLAGQLYSELKDFFPNNSVEYFVSYYDYYQPEAYVPHTDTFIEKDAQINDEIDKLR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT SL ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R
Sbjct: 124 HSATSSLFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I
Sbjct: 184 NDIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C
Sbjct: 244 FPASHFVTREEKLKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L +
Sbjct: 304 SGIENYSRHLTLRPAGSTPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVD 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL F+E+       I VSATPG +ELEQ  G+I EQIIRPTGL+DPP+
Sbjct: 364 HGFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQAPGVI-EQIIRPTGLLDPPI 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           +IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTL
Sbjct: 423 DIRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTL 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 483 ERIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      
Sbjct: 543 RNENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAA 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +   T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 603 EEPETYEATPAKK--MTKKEREKTIAKIEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|94994564|ref|YP_602662.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS10750]
 gi|189038003|sp|Q1J665|UVRB_STRPF RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|94548072|gb|ABF38118.1| Excinuclease ABC subunit B [Streptococcus pyogenes MGAS10750]
          Length = 663

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/659 (53%), Positives = 471/659 (71%), Gaps = 3/659 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +D   F++++ Y PSGDQP AI  L+  I   EK Q+LLG TG+GKT+TM++VI  + +P
Sbjct: 5   RDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+   V L+ G  + +  LL+ LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTG+ I  V+
Sbjct: 185 QFERNDIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  +H+VT    +  ++  I+ EL  +L   E EG+LLEAQRL QR  YD+EML  
Sbjct: 245 HLVLFPATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    +ENYSR++ GR+PGEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK 
Sbjct: 305 MGYTSGVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR EE+       + VSATPG +E+ Q    I+EQIIRPTGL+
Sbjct: 365 MLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGEYEMSQT-NTIIEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +++RS+  Q++D+  EIN    +  R  +T LTK+MAEDLT+YL E  ++V+YMHS+
Sbjct: 424 DPEIDVRSSMGQMDDLLGEINQRVARDERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTI
Sbjct: 484 IKTLERTEIIRDLRLGIFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+  VI+YAD +T S+Q AIDET RRRE Q+ +NK H I PQ++K+ I  +I  
Sbjct: 544 GRAARNVDGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGLISI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   +   +D    S+S+ + K  + +L+KQM  AA+ L+FE AA++RD I  LK
Sbjct: 604 SKTSHNDISKEEMD--YESMSRGERKEAINALQKQMQEAAELLDFELAAQMRDLILELK 660


>gi|212695826|ref|ZP_03303954.1| hypothetical protein ANHYDRO_00359 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677151|gb|EEB36758.1| hypothetical protein ANHYDRO_00359 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 659

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/657 (55%), Positives = 478/657 (72%), Gaps = 6/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P GDQP AI +L  GI   +  Q+L GVTGSGKTFTMA +I+ +QRP +V+A
Sbjct: 6   FVIKSDYTPKGDQPQAIKKLANGIKEGKHHQILQGVTGSGKTFTMANIIQEVQRPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL++EFK FFP NAVEYFVSYYDYYQPEAYV  TDTYI K+SSIN++ID++RH
Sbjct: 66  HNKTLAYQLFTEFKEFFPDNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G  E Y ++++ L+ G  +  +E++  L+++Q+ R 
Sbjct: 126 SATMSLFERRDVIIVASVSCIYGLGDPEEYKKLVLSLRPGQEISPEEVMKELIERQFVRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFR  GD ++IFP+  ++ A R+  FG++I+ ISEF  LTG+ I ++    IY
Sbjct: 186 DFDFSRGTFRKRGDVLDIFPAGNDEKAIRIEFFGDEIDRISEFDSLTGKVISHISHGYIY 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T       A+  IKEELK RL ELE E +L+EAQRLEQR  YD+EMLE  G C 
Sbjct: 246 PASHYATTAEKAEAAIVTIKEELKERLAELEGENKLVEAQRLEQRTNYDIEMLEEIGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++ R PG  P TL +Y P+D +LFVDESHV+IPQ+ GMY GD  RK  L +Y
Sbjct: 306 GIENYSRHMSQREPGSRPATLIDYFPDDFVLFVDESHVSIPQVGGMYEGDRSRKQNLVDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+  L   TI VSATPG +E+E+  G +VEQIIRPTGL+DP ++
Sbjct: 366 GFRLPSALDNRPLKFKEFEKLINQTIYVSATPGPYEMEKTGGEVVEQIIRPTGLLDPLID 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ + I+   ++  R+L+T LTKRMAEDLT+YL E  I+V+Y+HS++KT+E
Sbjct: 426 VKPVENQIDDLIENIHQTIEKKERVLVTTLTKRMAEDLTDYLSENGIKVKYLHSDIKTIE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLGKFDVLVGINLLREGLD+PE  L+AILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 486 RSEIIRDLRLGKFDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT+S++ AIDET RRR+ Q E NKKH I P ++K+ I E+I      +
Sbjct: 546 NSEGHVIMYADKITRSMKKAIDETERRRKIQTEFNKKHGITPTTIKKNISEIIQVTEKAE 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            A+       ++   S K+    L +L  +M+ AA+ L+FE+AA +RD+I ++K   
Sbjct: 606 NASE------EKEEFSPKEIDNILINLETEMYAAAEELDFEKAASLRDQIAKMKREF 656


>gi|187933656|ref|YP_001887535.1| excinuclease ABC subunit B [Clostridium botulinum B str. Eklund
           17B]
 gi|238691663|sp|B2TQS8|UVRB_CLOBB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|187721809|gb|ACD23030.1| excinuclease ABC, B subunit [Clostridium botulinum B str. Eklund
           17B]
          Length = 657

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/660 (54%), Positives = 471/660 (71%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + P GDQP AI  +LK I    + Q LLGVTGSGKTFTMA +IE +QRP +
Sbjct: 1   MGEFKIHSKFKPMGDQPQAIDTILKSIKQGNEFQTLLGVTGSGKTFTMANIIENLQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID+
Sbjct: 61  ILAHNKTLAAQLCSEFKEFFPENIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G+ + Y ++ + L+ G   E+ E++  L++ QY
Sbjct: 121 LRHSATSALFERRDVIIVASVSCIYGLGNPDEYKKLTISLRKGMQKERDEIIKKLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD ++I PS       R+  FG++I+ I EF  LTG  I     +
Sbjct: 181 ERNDIDFSRGTFRVRGDLLDIIPSSTSSKGIRIEFFGDEIDRIREFDVLTGTIIGERNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+ T + T+  ++  I+ EL+ RL EL  + +LLEAQRL QR  +D+EM+   G
Sbjct: 241 SIFPASHFATSKETVERSLGEIENELENRLRELNSQEKLLEAQRLRQRTNFDIEMIREMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L GR PG PP TL +Y PED LLF+DESHVT+PQ+  MY GD  RK TL
Sbjct: 301 YCSGIENYSRILDGRAPGTPPKTLIDYFPEDFLLFIDESHVTLPQVRAMYAGDRSRKNTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLP   DNRPL+FEE+       + VSATP  +ELE  Q  I EQ+IRPTGL+DP
Sbjct: 361 VDYGFRLPCAYDNRPLKFEEFEKKINQVMFVSATPAQYELEHSQS-IAEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + I+  + Q++D+Y EI     +G RIL+T LTKRMAEDLT+Y+ E  ++  YMHS++ 
Sbjct: 420 EIIIKPVKGQIDDLYTEIQETISRGYRILITTLTKRMAEDLTKYMIELGVKATYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++IIRDLRLG++DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMKIIRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+YAD ITKS++ AI ET RRR+ Q E+N++H I PQ++ +++ E+I+   
Sbjct: 540 AARNSESKVIMYADNITKSMKKAISETERRRKIQTEYNEEHGIIPQTINKEVRELIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + + +T       +  SL+KK+ K  +K    +M LAA NL FE AA++RD+I+ LK   
Sbjct: 600 VAEESTEYGMEVTK--SLTKKEAKKLIKEYTDEMKLAAKNLQFERAAQLRDKIEELKGKE 657


>gi|239624093|ref|ZP_04667124.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522124|gb|EEQ61990.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 660

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/655 (53%), Positives = 465/655 (70%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI  L+KG     + + LLGVTGSGKTFTMA VI+ +Q+P +++A
Sbjct: 3   FKLHSEYQPTGDQPQAIEALVKGFKEGNQFETLLGVTGSGKTFTMANVIQQLQKPTLIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID++RH
Sbjct: 63  HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E++  L+  QY R 
Sbjct: 123 SATAALSEREDVIIVASVSCIYGLGSPIDYKEMVISLRPGMIRDRDEIIHKLIDIQYDRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +E+FP++ +  A+R+  FG++++ I+E   LTG+    +  I I+
Sbjct: 183 DMDFKRGTFRVRGDVLEVFPAYSDSAAYRIEFFGDEVDRITEIDTLTGEIKAQLGHIAIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +  A + I  ELK ++   + E +LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 243 PASHYVVPKEKMMEATENILAELKEQVAFFKSEDKLLEAQRISERTNFDVEMMRETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PGEPP TL +Y PED L+ VDESH+T+PQ+ GMY GD  RK+TL +Y
Sbjct: 303 GIENYSRHLTGGLPGEPPCTLIDYFPEDFLIIVDESHITLPQVRGMYAGDRSRKSTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATP  +E E  + + VEQIIRPTGL+DP V 
Sbjct: 363 GFRLPSALDNRPLNFSEFEDKINQMMFVSATPSVYEREH-ELMRVEQIIRPTGLLDPEVT 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N       +IL+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ TLE
Sbjct: 422 VRPVEGQIDDLISEVNKEVANHHKILITTLTKRMAEDLTDYMREVGIRVKYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RAQIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S+++AI ET RRR+ Q  +N++H I P ++K+ + ++I       
Sbjct: 542 NSEGHVIMYADNMTDSMRVAIGETNRRRQIQQAYNEEHGITPTTIKKAVRDLIAISKAVA 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                   D +  S+ +K+    +K L K+M  AA  LNFEEAAR+RD +  +K 
Sbjct: 602 DNDEKFKKDPE--SMDEKELNKLVKELEKKMRQAAVELNFEEAARLRDRMIEIKK 654


>gi|218708975|ref|YP_002416596.1| excinuclease ABC subunit B [Vibrio splendidus LGP32]
 gi|218321994|emb|CAV18011.1| UvrABC system protein B [Vibrio splendidus LGP32]
          Length = 676

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/671 (53%), Positives = 481/671 (71%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + +DY PSGDQP AI +LL G+ S    Q LLGVTGSGKTFT+A VI   QRPAI+
Sbjct: 3   KLFDLVSDYSPSGDQPTAITKLLDGLDSGLAHQTLLGVTGSGKTFTLANVISQSQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  +SY +M++ L  G+ ++Q+++L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPKSYLKMMLHLSRGEVMDQRDILRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RG FRV G+ I+IFP+  +  A R+ MF ++++ IS F PLTG    R++   
Sbjct: 183 RNDVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEVDCISIFDPLTGAVKQRDLPRF 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  +HYVTPR  +  A++ IK+EL+ R   L+   +LLE QR+ QR  +D+EM+   G
Sbjct: 243 TVYPKTHYVTPREKILEAIENIKDELRDRAQYLKDNNKLLEEQRISQRTQFDIEMMTELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GE PPTLF+Y+P+D LL +DESHVT+PQI  MY+GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRAEGEAPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRP++FEE+  + P TI VSATPG++E+E+  G I +Q++RPTGL+DP
Sbjct: 363 VEFGFRLPSALDNRPMKFEEFESIAPQTIFVSATPGNYEIEKSDGEIADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI + + +  R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ 
Sbjct: 423 IIEVRPVATQVDDLLSEIRIRSVKEERVLVTTLTKRMAEDLTEYLSEHGVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+  + ILY D+ITKS++ AIDET RRREKQ  +N++  I PQ++K  I ++++   
Sbjct: 543 AARNLEGRAILYGDSITKSMRKAIDETDRRREKQQAYNEEQGITPQALKRNIKDIMELGD 602

Query: 738 LEDAATTNISI----------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           L  +     S                 L+ ++    +  L   M+  A NL FE AA+ R
Sbjct: 603 LTKSKQQRQSKQVPLSKVAEPSENYAVLTPQQLDKEISKLEAAMYQHAQNLEFELAAQKR 662

Query: 788 DEIKRLKSSPY 798
           DEI++L+    
Sbjct: 663 DEIEQLRKQFI 673


>gi|282922055|ref|ZP_06329752.1| excinuclease ABC, B subunit [Staphylococcus aureus A9765]
 gi|282593713|gb|EFB98705.1| excinuclease ABC, B subunit [Staphylococcus aureus A9765]
          Length = 663

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 473/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 8   PFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 67

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 68  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 127

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 128 HSATSALFERDDVIIIASVSCIYGLGNPEEYKGLVVSVRVGMEMDRSELLRKLVDVQYTR 187

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I
Sbjct: 188 NDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAI 247

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 248 FPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 307

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 308 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVD 367

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 368 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHT-DKMVEQIIRPTGLLDPKI 426

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 427 EVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 486

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 487 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 546

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   + E
Sbjct: 547 RNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATV-E 605

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +    + +       ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 606 NDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAE 662


>gi|304310697|ref|YP_003810295.1| Helicase subunit of the DNA excision repair complex [gamma
           proteobacterium HdN1]
 gi|301796430|emb|CBL44638.1| Helicase subunit of the DNA excision repair complex [gamma
           proteobacterium HdN1]
          Length = 676

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/668 (54%), Positives = 485/668 (72%), Gaps = 10/668 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AI QL+ G+ S    Q LLGVTGSGKTFT+A VIEA+QRP +V+ 
Sbjct: 9   FQISSTYKPAGDQPEAIRQLVDGLESGLSHQTLLGVTGSGKTFTIANVIEAVQRPTLVLV 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSY+DYYQPEAYVP +DTYIEK+SS+N+ I++MR 
Sbjct: 69  HNKTLAAQLYGEFKEFFPNNAVEYFVSYFDYYQPEAYVPSSDTYIEKDSSVNDHIEQMRL 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER+D I+V++VSCIYG+G   +Y +M++ L  GD++EQ+ LL  L + QY R 
Sbjct: 129 SATKALMERSDVIIVATVSCIYGLGDPATYLKMVLHLDRGDAMEQRTLLRRLAELQYTRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   R T+RV GD ++IFP+  +  A RV +F ++IE +S F PLTG  +R V    ++
Sbjct: 189 EMDFRRATYRVRGDVVDIFPAESDAEAIRVELFDDEIENLSFFDPLTGAILRRVPRATVF 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR T+  AM+ IK EL++RL EL   G+L+E QRL +R  +DLEM++  G C 
Sbjct: 249 PKTHYVTPRETMLGAMEAIKAELRLRLDELSGAGKLIEHQRLGERTRFDLEMMQELGYCN 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+G+  GEPP +LF+Y+P ++LL +DESHVT+PQ+  MYRGD  RK TL +Y
Sbjct: 309 GIENYSRHLSGKPQGEPPASLFDYLPANALLVIDESHVTLPQLGAMYRGDRSRKETLVQY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+EW    P  I VSATP  +E E  QG +VEQ++RPTGLVDP +E
Sbjct: 369 GFRLPSALDNRPLRFDEWEARAPQMIFVSATPAQYEAEH-QGQVVEQVVRPTGLVDPLIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D+ + I      G R+L+T LTKRMAEDLTE+  E+N++VRY+HS++ T+E
Sbjct: 428 VRPASHQVDDLLERIRERVAVGERVLVTTLTKRMAEDLTEFFNEQNVKVRYLHSDIGTVE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  LVA+LDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 488 RVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVAVLDADKEGFLRSERSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILYAD +T S++ AIDET RRR KQL  N+ H I P+SV++ + ++++      
Sbjct: 548 NVNGKAILYADVVTGSMRRAIDETERRRAKQLLFNEVHGITPRSVQKPVDDILEGAYRAP 607

Query: 741 AATTNISIDAQQLSLS---------KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           A+     +     +            +K    LK L  +M   A NL FE+AA++RDEIK
Sbjct: 608 ASAGGRGLRKVAEAAPVYDLAELANPRKASTVLKELETRMLKHAANLEFEQAAKLRDEIK 667

Query: 792 RLKSSPYF 799
           RL+ + + 
Sbjct: 668 RLRDATFI 675


>gi|319946954|ref|ZP_08021188.1| excision endonuclease subunit UvrB [Streptococcus australis ATCC
           700641]
 gi|319747002|gb|EFV99261.1| excision endonuclease subunit UvrB [Streptococcus australis ATCC
           700641]
          Length = 662

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLKVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ PED L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E+EQ    ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQT-DTVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++G R  +T LTK+MAEDLT+Y  E  ++V+YMHS++KTLE
Sbjct: 429 VRPTMGQMDDLLGEINARVERGERTFVTTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTMTQSMQRAIDETARRRQIQMAYNEEHGIVPQTIKKEIRDLIS---VTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                   +    SL++++ K  +K L+ QM  A + L+FE AA+IRD +  +K+
Sbjct: 606 VVAKEEDKEVDITSLNRQERKELVKKLQGQMQAAVEVLDFELAAQIRDMMLEVKA 660


>gi|211909246|gb|ACJ12896.1| UvrB [Vibrio natriegens]
          Length = 676

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/671 (54%), Positives = 485/671 (72%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             +++ + Y PSGDQP AI QLL G+ S    Q LLGVTGSGKTFT+A VI   QRPAI+
Sbjct: 3   KVYELVSSYQPSGDQPDAIKQLLDGLDSGLAHQTLLGVTGSGKTFTLANVIAQAQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  ESY QM++ L+ GD ++Q+++L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RG FRV G+ I+IFP+  +  A RV MF ++++ IS F PLTG    R++   
Sbjct: 183 RNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRY 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK EL++R  +L    +LLE QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPRDRVLEAIENIKVELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G I +Q++RPTGL+DP
Sbjct: 363 VEFGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELEKSDGDIADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ 
Sbjct: 423 ILEVRPVATQVDDLLSEIRIRAVKDERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+  K ILYAD+ITKS++ A+DET RRREKQ  +N++  I PQ++   I ++++   
Sbjct: 543 AARNIEGKAILYADSITKSMKKAMDETNRRREKQQAYNEEMGIVPQALTRNIKDIMELGD 602

Query: 738 LEDAA----------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           +  +           +           +S ++ +  +  L   M+  A +L FE AA  R
Sbjct: 603 ITKSKRQRTGKQVPLSKVAEPSQSYEVMSPQQLEKEISRLEAAMYQHAQDLEFELAAEKR 662

Query: 788 DEIKRLKSSPY 798
           DEI++L++   
Sbjct: 663 DEIEKLRAQFI 673


>gi|59711543|ref|YP_204319.1| excinuclease ABC subunit B [Vibrio fischeri ES114]
 gi|75507048|sp|Q5E6B5|UVRB_VIBF1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|59479644|gb|AAW85431.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Vibrio fischeri ES114]
          Length = 676

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/673 (53%), Positives = 484/673 (71%), Gaps = 11/673 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + +++ ++Y P+GDQP AI  L +G+ +    Q LLGVTGSGKTFT+A VI    RP I+
Sbjct: 3   SAYELVSNYQPAGDQPQAIKTLNEGLENGLAHQTLLGVTGSGKTFTLANVIAHSGRPTII 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY E K FFP+NAVEYFVSY+DYYQPEAYVP TDT+IEK+SS+NE I++M
Sbjct: 63  MAHNKTLAAQLYGEMKAFFPNNAVEYFVSYFDYYQPEAYVPTTDTFIEKDSSVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+++SVS IYG+G  ++Y  MI+ L+ GD + Q+++L  L + QYK
Sbjct: 123 RLSATKALLERKDAIIIASVSAIYGLGDPKAYLSMILHLRRGDIINQRDMLRRLAELQYK 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RGTFRV G+ ++IFP+  E  A R+ MF +++E IS+F PLTG  I +++   
Sbjct: 183 RNDMAFERGTFRVRGEVLDIFPAESEHEAIRIEMFDDEVERISKFDPLTGSIITKDMPRC 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK +L +R  EL +  +L+E QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPREQVLDAIEKIKVDLAIRQKELLENNKLVEEQRITQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GE PPTLF+Y+P+D LL +DESH+T+ QI  MY+GD  RK  L
Sbjct: 303 FCSGIENYSRYLSGRPEGEAPPTLFDYLPQDGLLIIDESHITVSQIGAMYKGDRSRKENL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +E+E+  G I EQ++RPTGL+DP
Sbjct: 363 VEYGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYEIEKSDGEIAEQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI +  +   R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ 
Sbjct: 423 VIEVRPVATQVDDLLSEIRIRTKNNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--- 734
           AARN+  K ILYAD IT S++ AI ET RRREKQ  HN+   I PQ++K+ + ++++   
Sbjct: 543 AARNLEGKAILYADKITGSMEKAIGETERRREKQQLHNETLGIVPQALKKDVADILELGD 602

Query: 735 ------PILLEDAATTNISID-AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                  ++      + ++ + A   ++S ++ +  ++ L  +M+  A +L FE+AA++R
Sbjct: 603 MTKNKRKVVAPKIKLSEVAEEGASYSAMSPQQLEKAIQKLESKMYQHAKDLEFEQAAQVR 662

Query: 788 DEIKRLKSSPYFQ 800
           DEI  L+      
Sbjct: 663 DEIDNLRKQFIVN 675


>gi|116333297|ref|YP_794824.1| excinuclease ABC subunit B [Lactobacillus brevis ATCC 367]
 gi|122270015|sp|Q03SM9|UVRB_LACBA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|116098644|gb|ABJ63793.1| Excinuclease ABC subunit B [Lactobacillus brevis ATCC 367]
          Length = 668

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/658 (52%), Positives = 465/658 (70%), Gaps = 2/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AI QL  GI + EK Q+LLG TG+GKTFT++ VI+ + +P +V++
Sbjct: 10  FDLVSKYQPTGDQPEAINQLTHGIEAGEKAQILLGATGTGKTFTISNVIKNVNKPTLVLS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y   +V L++G  +E+  LL  LV  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPTEYKNHVVSLRVGQEIERDALLRKLVNIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD +EIFP+  ++ A RV  FG++I+ I E   LTG+ + + E + I+
Sbjct: 190 DYDFQRGRFRVHGDVVEIFPASRDERALRVEFFGDEIDRIREVDALTGEIVGDREHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A   I+ ELK RL ELE +G+LLEAQRL+QR TYDLEM+   G   
Sbjct: 250 PATHFMTNDDIMAQATAGIEGELKERLAELENDGKLLEAQRLKQRTTYDLEMMREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D LL VDESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRWMDGRQAGEPPYTLLDFFPKDFLLVVDESHVTMPQVRGMYNGDRARKQQLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E        I +SATPG +E EQ    +V+QIIRPTGL+DP ++
Sbjct: 370 GFRLPSALDNRPLKLNEVEQHINQVIYMSATPGPYEAEQT-DHVVQQIIRPTGLLDPTID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+YL +  I+V Y+HS++KTLE
Sbjct: 429 VRPIMGQMDDLVGEINQRIEKNERTFVTTLTKKMAEDLTDYLKDLGIKVAYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RDLRLGK+DVLVGINLLREG+DIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTEIMRDLRLGKYDVLVGINLLREGIDIPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD++T S+Q A+DET RRR+ Q+ +NK+H I P ++ + I ++I      D
Sbjct: 549 NSHGSVIMYADSVTDSMQAAMDETARRRQIQIAYNKEHGITPTTIIKPIRDLIAVSKKND 608

Query: 741 -AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            A   +  + +    ++K+  +  +  L  +M  AA  L+FE+AA +RD I  +K+  
Sbjct: 609 NAGEKDDFVASDFEDMTKEDQEKLIARLEDEMRAAAKKLDFEQAASLRDTIMDMKTEI 666


>gi|54308311|ref|YP_129331.1| excinuclease ABC subunit B [Photobacterium profundum SS9]
 gi|81828819|sp|Q6LT47|UVRB_PHOPR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|46912739|emb|CAG19529.1| Putative excinuclease ABC subunit B [Photobacterium profundum SS9]
          Length = 674

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/671 (53%), Positives = 473/671 (70%), Gaps = 9/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + + + P+GDQP AI QLL+G+ S    Q LLGVTGSGKTFT+A VI    RP  +
Sbjct: 3   KVFSLSSGFSPAGDQPTAINQLLEGLDSGLAHQTLLGVTGSGKTFTIANVIAESNRPTFI 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  MAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+++SVS IYG+G  +SY +M++ ++ GD + Q+++L  L + QY 
Sbjct: 123 RLSATKALLERRDVIIIASVSAIYGLGDPDSYLKMMLHVRRGDMLNQRDILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETI 377
           R D+   RG FRV G+ I++FP+  E  A R+ +F +++E I+ F PLTG  ++  +   
Sbjct: 183 RNDVSFERGHFRVRGEVIDVFPAESEHDAIRIELFDDEVECINVFDPLTGAVLQKDLPRC 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK+EL +R  +L    +L+E QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPREKILEAIEKIKDELVVRRKQLMDSNKLVEEQRISQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+ QI  MYRGD  RK  L
Sbjct: 303 FCSGIENYSRYLSGREEGEPPPTLFDYLPADGLLIIDESHVTVSQIGAMYRGDRSRKENL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP++FEE+  L P TI VSATPG +E+EQ    I EQ++RPTGL+DP
Sbjct: 363 VEYGFRLPSALDNRPMKFEEFASLAPQTIYVSATPGKYEIEQSGNDIAEQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI +   +G R+L+T LTKRM+EDL EYL E N++VRY+HS++ 
Sbjct: 423 IIEVRPVATQVDDLLSEIRIREVKGERVLVTTLTKRMSEDLAEYLAEHNVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+  + ILY D IT S++ AI ET RRREKQ  HNKK+ I PQ + +K+ ++++   
Sbjct: 543 AARNLEGRAILYGDKITGSMERAIFETNRRREKQALHNKKNGITPQGLNKKVGDILELGK 602

Query: 738 LEDAATTNISI--------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
               + TN +             ++LS ++ +  ++ L  +M+  A NL FE+AA  RD+
Sbjct: 603 PSSRSRTNKAAQLNRVAESKGTYVNLSPQQLELEIQRLETEMYDLAQNLEFEKAAEARDK 662

Query: 790 IKRLKSSPYFQ 800
           I  L+      
Sbjct: 663 IHTLRQQFIMN 673


>gi|254229839|ref|ZP_04923244.1| excinuclease ABC, B subunit [Vibrio sp. Ex25]
 gi|262393723|ref|YP_003285577.1| excinuclease ABC subunit B [Vibrio sp. Ex25]
 gi|151937608|gb|EDN56461.1| excinuclease ABC, B subunit [Vibrio sp. Ex25]
 gi|262337317|gb|ACY51112.1| excinuclease ABC subunit B [Vibrio sp. Ex25]
          Length = 676

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/671 (54%), Positives = 488/671 (72%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             +++ +DY PSGDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRPAI+
Sbjct: 3   KVYELVSDYQPSGDQPGAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  ESY QM++ L+ GD ++Q+++L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RG FRV G+ I+IFP+  +  A RV MF ++I+ IS F PLTG    R++   
Sbjct: 183 RNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEIDCISVFDPLTGVVKQRDLPRY 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK EL++R  +L    +LLE QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPRDRILEAIENIKVELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRLEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G + +Q++RPTGL+DP
Sbjct: 363 VEFGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSAGDVADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI L + +  R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ 
Sbjct: 423 ELEVRPVATQVDDLLSEIRLRSAKDERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+  K ILYAD IT S++ A+DET RRREKQ  +N++  I+PQ++K  I ++++   
Sbjct: 543 AARNLEGKAILYADRITNSMKKAMDETNRRREKQKAYNEEMGISPQALKRNIKDIMELGD 602

Query: 738 LEDAA----------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           +  +           +           +S ++ +  +  L   M+  A +L FE AA+ R
Sbjct: 603 ITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEISRLEAAMYQHAQDLEFELAAQKR 662

Query: 788 DEIKRLKSSPY 798
           DEI++L++   
Sbjct: 663 DEIEKLRAQFI 673


>gi|311031898|ref|ZP_07709988.1| excinuclease ABC subunit B [Bacillus sp. m3-13]
          Length = 659

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/659 (54%), Positives = 470/659 (71%), Gaps = 1/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P GDQP AIA++++G+   +K Q LLG TG+GKTFT++ VI+A+ +P +
Sbjct: 1   MEQFELVSGYKPDGDQPTAIAEIVEGLKKGKKHQTLLGATGTGKTFTVSNVIQAVNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID+
Sbjct: 61  IIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT SL ERND I+++SVSCIYG+GS E Y  ++V L+ G   E+  LL  LV  QY
Sbjct: 121 LRHSATASLFERNDVIIIASVSCIYGLGSPEEYRDLVVSLRTGMEKERNVLLRDLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI   RGTFRV GD +EIFP+  ++   RV  FG++I+ I E   LTG+ + +   +
Sbjct: 181 SRNDIDFKRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIDRIREVDALTGEILGDRNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+VT    +  A+  I+ EL+ RL EL + G+LLEAQRLEQR  YDLEM+   G
Sbjct: 241 SIFPASHFVTREEKMKKAIVNIQAELEERLEELREAGKLLEAQRLEQRTRYDLEMMAEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LT R  G  P TL ++ PED LL +DESHVT+PQI GM+ GD  RK  L
Sbjct: 301 FCSGIENYSRHLTLRPAGSTPYTLMDFFPEDFLLVIDESHVTLPQIRGMFNGDQARKQVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPLRFEE+       + VSATPG +ELE     +VEQIIRPTGL+DP
Sbjct: 361 VDHGFRLPSAKDNRPLRFEEFEKKTAQLVYVSATPGPYELEHTP-KMVEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R  + Q++D+  EI+   ++  R+L+T LTK+M+EDLT YL E  I+V Y+HSE+K
Sbjct: 420 IIEVRPIKGQIDDLIGEIHKRVEKDERVLVTTLTKKMSEDLTAYLKELGIKVAYLHSEIK 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TL+RIEIIR+LR+GK DVL+GINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TLDRIEIIRELRMGKHDVLIGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N KVI+YAD ITKS+ +A++ET RRRE Q  +N +H I P ++K+K+ E+I    
Sbjct: 540 AARNSNGKVIMYADKITKSMDIALNETKRRREIQEAYNLEHGITPTTIKKKVPELIRATF 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + +               +KK+ +  ++S+ ++M  AA  L+FE AA +RD I  LK+ 
Sbjct: 600 VAEEDGNYDGKAPSLRPKNKKEREKLIESMEQEMKDAAKALDFERAAELRDLILELKAE 658


>gi|56460889|ref|YP_156170.1| excinuclease ABC subunit B [Idiomarina loihiensis L2TR]
 gi|81362853|sp|Q5QXB8|UVRB_IDILO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56179899|gb|AAV82621.1| Helicase subunit of the DNA excision repair complex, UvrB
           [Idiomarina loihiensis L2TR]
          Length = 677

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/669 (54%), Positives = 481/669 (71%), Gaps = 12/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  LL  + +    Q+LLGVTGSGKTFTMA VIE  QRP +++A
Sbjct: 5   FELVSKYKPAGDQPKAIESLLDNLDAGLAHQVLLGVTGSGKTFTMANVIERSQRPTLILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K +FP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEYFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++V+SVS IYG+G  ESY +M++ L+ GD ++Q+++L  L + QYKR 
Sbjct: 125 SATKALMERRDVVLVASVSAIYGLGDPESYMKMMLHLRRGDIIDQRDVLRRLAQLQYKRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIKI 379
           D    RGT+RV GD I+IFP+  E++A R+ +F ++++ IS F PLTGQ     V    I
Sbjct: 185 DAAFERGTYRVRGDVIDIFPAESEEIAVRLELFDSEVDRISFFEPLTGQITEKDVARATI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  L  A++ IK+ELK R   L K+ +L+E QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPREVLVKAIEKIKDELKDRRDILLKQNKLIEEQRINQRTQFDIEMMLELGYC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR PGEPPPTL +Y+P+++LL +DESHVT+ QI  MY+GD  RK  L E
Sbjct: 305 SGIENYSRYLSGRAPGEPPPTLMDYLPDNALLIIDESHVTVSQIGAMYKGDRSRKENLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+F+E+  + P T+ VSATPG +ELE+    +VEQ++RPTGL+DP +
Sbjct: 365 YGFRLPSALDNRPLKFDEFEAIAPQTLYVSATPGKYELERSGNEVVEQVVRPTGLIDPQI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI L  + G R+L T LTK+M+EDL +YL E  I+VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLMSEIRLRTEVGERVLATTLTKKMSEDLADYLDEHGIKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERMEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN + ILYAD IT S+Q A+DET RRREKQ+ +NK+H I PQ + + I +V+D     
Sbjct: 545 RNVNGRAILYADRITGSMQRAMDETDRRREKQIAYNKEHGITPQGLNKDITDVMDLGQGS 604

Query: 740 DAATTNISIDA-----------QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
             A  + +  A             +    K     + +  K+M+ AA NL FE+A ++RD
Sbjct: 605 AKARKSKAEKALAEVASGYDARTVVVKDAKAVMKEIDAKEKEMYKAAQNLEFEQAGKLRD 664

Query: 789 EIKRLKSSP 797
           E+  L+   
Sbjct: 665 EVAELREQL 673


>gi|184153027|ref|YP_001841368.1| excinuclease ABC subunit B [Lactobacillus reuteri JCM 1112]
 gi|183224371|dbj|BAG24888.1| excinuclease ABC subunit B [Lactobacillus reuteri JCM 1112]
          Length = 671

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/661 (52%), Positives = 467/661 (70%), Gaps = 5/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL KGI   EK Q+LLG TG+GKTFT++ VI  + +P ++++
Sbjct: 10  FELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y   ++ L++G  +E+  LL+ LV  Q+ R 
Sbjct: 130 SATTSLLERNDVIVVASVSSIFGLGDPREYQNSVLSLRVGQEIERDRLLTELVNIQFDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E   LTG+ I + + + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDEIDRIREVDALTGEVIGDRDHVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +   EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNEEVMDRALPQIEADMKKQVKKFTDEGKLLEAERIQQRTTYDIEMMREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+ GR PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRYMDGRKPGEPPYTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + +SATPG +E+EQ    + +QIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLKLPEFEQHVNQVVYMSATPGPYEMEQT-DHVAQQIIRPTGLLDPTVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+M+EDLT+YL +  ++V+Y+HS++KTLE
Sbjct: 429 VRPVMGQIDDLVGEINKRIEKNERVFVTTLTKKMSEDLTDYLKDMGLKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----DPI 736
           N N  VI+YADT+T S+Q A+DET RRR  Q+++N++H+I P ++ + I E I       
Sbjct: 549 NENGAVIMYADTVTDSMQKAMDETKRRRTIQMKYNEEHHITPHTIIKPIQEAITVTKKAT 608

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              +A  +    D     L K+     L  L +QM  AA  L+FE+AA +RD I  LK+ 
Sbjct: 609 DETEADNSAEFTDKDFAKLDKEAQAKMLDELTEQMRSAAKRLDFEQAATLRDTIMELKTK 668

Query: 797 P 797
            
Sbjct: 669 A 669


>gi|315650759|ref|ZP_07903811.1| excision endonuclease subunit UvrB [Eubacterium saburreum DSM 3986]
 gi|315486966|gb|EFU77296.1| excision endonuclease subunit UvrB [Eubacterium saburreum DSM 3986]
          Length = 655

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/657 (53%), Positives = 460/657 (70%), Gaps = 4/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI  L+ G     + Q LLG TGSGKTFTMA VI+ +Q+P +++A
Sbjct: 3   FKLHSEFLPTGDQPQAIEALVNGFKEGNQFQTLLGATGSGKTFTMANVIQKLQKPTLIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH
Sbjct: 63  HNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+GS   Y +M+V L+ G   ++ +++  L+  QY R 
Sbjct: 123 SATASLSERKDVIIVASVSCIYGLGSPIDYQEMVVSLRPGMERDRDDVIRKLIDMQYDRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +E+FP+     A R   FG+++++I E   LTG  I  +    I+
Sbjct: 183 DMDFHRGTFRVRGDVLEVFPAASTSTALRFEFFGDEVDKILEIDTLTGNIIAELAHAVIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     + TA + I +E + R+   + E +L+EAQR+++R  +D+EM+  TG C 
Sbjct: 243 PASHYVVAPEKMKTATENILKECEERVSFFKSEDKLIEAQRIDERTHFDVEMMRETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PGEPP TL +Y  +D L+ VDESH+TIPQ+ GMY GD  RK TL  Y
Sbjct: 303 GIENYSRHLTGSAPGEPPYTLIDYFKDDFLIIVDESHITIPQVRGMYAGDRSRKMTLVNY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATP  +E E  +    EQIIRPTGL+DPP+ 
Sbjct: 363 GFRLPSALDNRPLEFSEFESKIDQMLFVSATPSVYEKEH-EMFRTEQIIRPTGLLDPPIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N   ++  +IL+T LTKRMAEDLTEY+ E  IRVRY+HS++ TLE
Sbjct: 422 VRPVEGQIDDLIGEVNKEIEKKNKILITTLTKRMAEDLTEYMKEVGIRVRYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL KFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RAEIIRDMRLDKFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD +T S++ AIDET RRR  Q  +NK+H I P ++K+ + ++I      D
Sbjct: 542 NADGHVIMYADNMTDSMKAAIDETYRRRGIQEAYNKEHGITPTTIKKAVRDLIAISKAAD 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + +T   ID    S+ K +    +K L K+M  AA  L+FE AA +RD++  L++S 
Sbjct: 602 SVST---IDKDVESMDKAEINKLIKELEKKMFKAAAELDFENAALLRDKVSELRASL 655


>gi|315180790|gb|ADT87704.1| excinuclease ABC subunit B [Vibrio furnissii NCTC 11218]
          Length = 676

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/671 (53%), Positives = 481/671 (71%), Gaps = 11/671 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y PSGDQP AI QLL G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSEYQPSGDQPEAIRQLLDGVDAGLAHQTLLGVTGSGKTFTLANVIAKAQRPTILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++++N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDAAVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG    R++    +
Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVECISIFDPLTGAIKQRDLPRFTV 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A+++IK EL  R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEHIKAELASRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLVIDESHVTVPQIGAMYKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    I +Q++RPTGL+DP +
Sbjct: 365 YGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSGNDIADQVVRPTGLLDPEL 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGLFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  + ILYAD ITKS++ A+DET RRREKQ  +N+   I PQ++K  + ++++   + 
Sbjct: 545 RNLEGRAILYADNITKSMKKAMDETNRRREKQQAYNEAMGIQPQALKRNVKDIMELGDIT 604

Query: 740 DAATTNISI----------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            +     S            A   +++ ++ +  +  L  QM+  A +L FE AA  RD+
Sbjct: 605 KSRKQRTSKVVPLAKVAETSASYDTMTPQQLEKEINKLEAQMYKHAQDLEFELAAEKRDQ 664

Query: 790 IKRLKSSPYFQ 800
           ++ L+      
Sbjct: 665 LEALRQQFIVN 675


>gi|153838169|ref|ZP_01990836.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus AQ3810]
 gi|149748428|gb|EDM59287.1| excinuclease ABC, B subunit [Vibrio parahaemolyticus AQ3810]
          Length = 676

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/671 (54%), Positives = 490/671 (73%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             +++ ++Y PSGDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRPAI+
Sbjct: 3   KVYELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  ESY QM++ L+ GD ++Q+++L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RG FRV G+ I+IFP+  +  A RV MF ++++ IS F PLTG    R++   
Sbjct: 183 RNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRY 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK EL++R  +L +  +L+E QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEE+  L P TI VSATPG++EL++  G I +Q++RPTGL+DP
Sbjct: 363 VEFGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELDKSAGEIADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ 
Sbjct: 423 ILEVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+  K ILYAD+ITKS++ A+DET RRREKQ  +N+K  I PQ++K  I ++++   
Sbjct: 543 AARNIEGKAILYADSITKSMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIMELGD 602

Query: 738 LEDAA----------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           +  +           +           +S ++ +  +  L   M+  A +L FE AA  R
Sbjct: 603 ITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEISRLEAAMYQHAQDLEFELAAEKR 662

Query: 788 DEIKRLKSSPY 798
           DEI++L++   
Sbjct: 663 DEIEKLRAQFI 673


>gi|261341364|ref|ZP_05969222.1| excinuclease ABC subunit B [Enterobacter cancerogenus ATCC 35316]
 gi|288316674|gb|EFC55612.1| excinuclease ABC subunit B [Enterobacter cancerogenus ATCC 35316]
          Length = 671

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/662 (55%), Positives = 474/662 (71%), Gaps = 6/662 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTG     ++   
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDMALRVELFDEEVERLSLFDPLTGHIESVIQRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 VYPKTHYVTPRERIVQAMEDIKAELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGEDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI + +    R+L+T LTKRMAEDLTEYL E   +VRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRIRSAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV------ 732
           ARNVN K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K++++      
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGITPQGLNKKVVDILALGQN 602

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           I     +        ++   ++L+ K  +  +  L  QM   A NL FEEAA+IRD++ +
Sbjct: 603 IAKTKTKGRGKARPVVEEDTVALTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQ 662

Query: 793 LK 794
           L+
Sbjct: 663 LR 664


>gi|261381261|ref|ZP_05985834.1| excinuclease ABC subunit B [Neisseria subflava NJ9703]
 gi|284795734|gb|EFC51081.1| excinuclease ABC subunit B [Neisseria subflava NJ9703]
          Length = 675

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/665 (53%), Positives = 482/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P TI VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+           ++ +    +++     +  L K M  AA +L FEEAA +RD+I+ +K
Sbjct: 608 EEDGGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDKIRGIK 667

Query: 795 SSPYF 799
            +  F
Sbjct: 668 ENLLF 672


>gi|71907632|ref|YP_285219.1| excinuclease ABC subunit B [Dechloromonas aromatica RCB]
 gi|90110882|sp|Q47EI2|UVRB_DECAR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|71847253|gb|AAZ46749.1| Excinuclease ABC subunit B [Dechloromonas aromatica RCB]
          Length = 690

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/671 (52%), Positives = 478/671 (71%), Gaps = 4/671 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + +++   + P+GDQP AI QL++G+      Q LLGVTGSGKT+TMA VI    RPA
Sbjct: 14  EGSPYRLHQPFPPAGDQPEAIRQLVEGLDDGLSFQTLLGVTGSGKTYTMANVIARTGRPA 73

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+APNK LAAQLYSEFK FFP N+VEYFVSYYDYYQPEAYVP  D +IEK+SSIN+ I+
Sbjct: 74  LVLAPNKTLAAQLYSEFKEFFPENSVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINDHIE 133

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+SL+ER D ++V++VSCIYGIG  + Y  MI+ +++GD ++Q+ ++  L   Q
Sbjct: 134 QMRLSATKSLIERRDVVIVATVSCIYGIGDRDEYHNMILTMRVGDKLDQRAIVKRLTDMQ 193

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R ++   RGTFRV GD I+IFP+   + A R+S+F +++E +  F PLTG  +     
Sbjct: 194 YERNEMDFHRGTFRVRGDIIDIFPAEHAEHAIRISLFDDEVEGMQFFDPLTGHLLHKALR 253

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++  SHYVTPR T+  A++ IK+EL+ R+    +  +L+EAQR+EQR  +DLEML+  
Sbjct: 254 FTVFPASHYVTPRATVLRAVEAIKDELRERIDFFTRNNKLVEAQRIEQRTRFDLEMLDQI 313

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +GR  GE PPTL +Y+P D+L+F+DESHV+I Q+ GMY+GD  RK  
Sbjct: 314 GFCKGIENYSRHFSGRKAGESPPTLIDYLPPDALMFIDESHVSIGQVGGMYKGDRSRKEN 373

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL+F E+      TI VSATP  +E +   G +VEQ+ RPTGL+D
Sbjct: 374 LVDYGFRLPSALDNRPLQFNEFEAHMRQTIFVSATPADYEQQHA-GQVVEQVARPTGLID 432

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P V +R A TQV+D+  EI      G R+L+T LTKRM+EDLT++L +  I+VRY+HS++
Sbjct: 433 PEVIVRPASTQVDDLLAEIGKRIAVGERVLVTTLTKRMSEDLTDFLADNGIKVRYLHSDI 492

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 493 DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 552

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAAR+++   ILYADT+T+S+Q AI ET RRREKQ+  N +H I P+ V +KI ++ID +
Sbjct: 553 RAARHIHGTAILYADTVTQSMQRAIAETGRRREKQIAFNLEHGITPRGVSKKIKDIIDGV 612

Query: 737 LLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
               +A T +      A   ++ +K     +K L K M   A NL FE+AA  RD++ RL
Sbjct: 613 YDAGSAQTELKAAQQRAAYDAMDEKAVAREIKRLEKSMMECAKNLEFEKAAAARDDLFRL 672

Query: 794 KSSPYFQGLDD 804
           +   +     D
Sbjct: 673 RERVFGAAQHD 683


>gi|270290697|ref|ZP_06196921.1| excinuclease ABC, B subunit [Pediococcus acidilactici 7_4]
 gi|270280757|gb|EFA26591.1| excinuclease ABC, B subunit [Pediococcus acidilactici 7_4]
          Length = 667

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/663 (52%), Positives = 466/663 (70%), Gaps = 2/663 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           ++   F++ + Y P+GDQP AI QL+ GI   EK Q+LLG TG+GKTFT++ VI+ + +P
Sbjct: 5   EENRQFELVSKYQPTGDQPTAIKQLVDGIQKGEKEQILLGATGTGKTFTISNVIQQVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            ++++ NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++I
Sbjct: 65  TLILSHNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D +RHSAT SLLERND IVV+SVS I+G+G    Y    + L++G  +++ +LL  LV  
Sbjct: 125 DELRHSATSSLLERNDVIVVASVSSIFGLGDPREYRDQALSLRVGQEIDRNQLLRELVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY+R DI   RG FRV GD +EIFP+  E  + RV  FG++I+ + E   LTG+ I + +
Sbjct: 185 QYERNDIDFQRGRFRVHGDVVEIFPAANEAHSIRVEFFGDEIDRMREMDALTGEIIGDRD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I I+  +H++T    +  A++ I+ ELK RL+ELE +G+LLEAQRL+QR TYD+EML  
Sbjct: 245 HITIFPATHFMTNEDRMEHAIEGIEAELKDRLVELEGQGKLLEAQRLKQRTTYDIEMLRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    IENYSR++ GR PGEPP TL ++ P+D LL VDESHVT+PQ+ GMY GD  RK 
Sbjct: 305 MGYTNGIENYSRHMDGRKPGEPPYTLLDFFPDDFLLVVDESHVTMPQVRGMYNGDRARKQ 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPL+ EE+       + +SATPG +E  +    +V+QIIRPTGL+
Sbjct: 365 QLIDYGFRLPSALDNRPLKLEEFEKHVHQVVYMSATPGDYETART-DHVVQQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +E+R    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+YL +  I+V Y+HS+
Sbjct: 424 DPTIEVRPIMGQMDDLLGEINQRVEKDERVFVTTLTKKMAEDLTDYLKDMGIKVAYLHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           VKTLER  IIR+LRLGK+DVLVGINLLREG+D+PE  LVAILDADKEGFLR+  S+IQ  
Sbjct: 484 VKTLERTRIIRNLRLGKYDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNTRSMIQVA 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN +  VI+YAD +T+S++  IDET RRR  Q  +NK+H I P ++K+ I  +I  
Sbjct: 544 GRAARNEHGHVIMYADHVTQSMKETIDETARRRSIQEAYNKEHGITPHTIKKDIRSLISA 603

Query: 736 ILL-EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               ED    +  +D     + +K  K  ++SL  QM  AA  L+FE AA +RD +  LK
Sbjct: 604 TTETEDTGEKDDFLDVDFADMDRKDQKEMIESLEDQMRAAAKELDFERAANLRDTVLELK 663

Query: 795 SSP 797
           +  
Sbjct: 664 AQI 666


>gi|91227346|ref|ZP_01261735.1| excinuclease ABC subunit B [Vibrio alginolyticus 12G01]
 gi|91188610|gb|EAS74900.1| excinuclease ABC subunit B [Vibrio alginolyticus 12G01]
          Length = 676

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/671 (54%), Positives = 490/671 (73%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             +++ +DY PSGDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRPAI+
Sbjct: 3   KVYELVSDYQPSGDQPGAINQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  ESY QM++ L+ GD +EQ+++L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIEQRDMLRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RG FRV G+ I+IFP+  +  A RV MF ++++ IS F PLTG    R++   
Sbjct: 183 RNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRY 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK EL++R  +L    +LLE QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPRDRILEAIENIKVELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G + +Q++RPTGL+DP
Sbjct: 363 VEFGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSAGDVADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ 
Sbjct: 423 ELEVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+  K ILYAD IT S++ A+DET RRREKQ  +N++  I+PQ++K  I ++++   
Sbjct: 543 AARNIEGKAILYADRITNSMKKAMDETNRRREKQEAYNEEMGISPQALKRNIKDIMELGD 602

Query: 738 LEDAA----------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           +  +           +          +LS ++ +  +  L   M+  A +L FE AA+ R
Sbjct: 603 ITKSKRQRNTKQVPLSKVAEPSQTYEALSPQQLEKEISRLEAAMYQHAQDLEFELAAQKR 662

Query: 788 DEIKRLKSSPY 798
           DEI++L++   
Sbjct: 663 DEIEKLRAQFI 673


>gi|218778625|ref|YP_002429943.1| excinuclease ABC, B subunit [Desulfatibacillum alkenivorans AK-01]
 gi|218760009|gb|ACL02475.1| excinuclease ABC, B subunit [Desulfatibacillum alkenivorans AK-01]
          Length = 679

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/671 (53%), Positives = 476/671 (70%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
            S   + ++ T FQ+ + + P GDQPAAI  L KG++  +K Q+LLGVTGSGKTFTMA V
Sbjct: 8   ASAPPNLEEFTEFQVVSPFEPKGDQPAAIEYLAKGVNEGKKHQVLLGVTGSGKTFTMAHV 67

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
                +P +V+APNK LAAQLY+EFK  FPHNAVEYFVSYYDYYQPEAY+P +DTYIEK+
Sbjct: 68  AARCGKPVLVLAPNKTLAAQLYNEFKQLFPHNAVEYFVSYYDYYQPEAYLPNSDTYIEKD 127

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           S INE ID++RH+AT ++L R D I+V+SVSCIYG+G+ E Y  M ++L +G  + +++L
Sbjct: 128 SKINEMIDKLRHAATVAVLTRRDVIIVASVSCIYGLGAPEDYIAMRLELTVGMELSREKL 187

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV   Y+R D+   RG FRV GD +EI+P++ +D A R+  FG+D++ ISE  PL G
Sbjct: 188 LKDLVAMLYERNDMDFHRGVFRVRGDRVEIYPAYWDDQAIRIEFFGDDVDSISEIDPLRG 247

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             ++ ++   +Y  SHYVT + TL  AM  I EELK+R+       +L+EAQR+++R  Y
Sbjct: 248 VVMKKLQRTMVYPASHYVTSKETLKRAMGAITEELKVRVAHFRDTNQLIEAQRIQERTDY 307

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEM+   G C  IENY+R+LTGRN GEPPPTL ++ PED L+F+DESH+ +PQ+ GM+R
Sbjct: 308 DLEMMHELGYCTGIENYARHLTGRNEGEPPPTLIDFFPEDFLMFIDESHMAVPQVRGMFR 367

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL FEE+       + VSATP  +ELE   G I EQI
Sbjct: 368 GDRSRKETLVQFGFRLPSALDNRPLMFEEFAEKVKQVVYVSATPADYELEVADGAIAEQI 427

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +RPTGL+DP + +R A  QV+D+ +EI +  +   R+L+T LTKRMAEDL +Y     + 
Sbjct: 428 VRPTGLMDPEIIVRPATNQVDDLLEEIRVRVENNERVLITTLTKRMAEDLCDYYEGLGLA 487

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++KT+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS 
Sbjct: 488 VRYLHSDIKTMERMEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSA 547

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQT+GRAARNVN KVILYAD IT+S+++A+DE+ RRR+ Q  +N+ + I P+S+K++
Sbjct: 548 RSLIQTVGRAARNVNGKVILYADAITRSMKMAMDESQRRRDLQAAYNEANGITPESIKKE 607

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           I  + D +   D  T        Q ++  K     +  L K+M  AA  L FE AA +RD
Sbjct: 608 IGSIFDSVYEADYVTVEADKKEAQEAIESKDLDRLIAMLEKEMQQAAKELAFERAAELRD 667

Query: 789 EIKRLKSSPYF 799
           +IK LK     
Sbjct: 668 QIKDLKRQDLG 678


>gi|303254266|ref|ZP_07340375.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS455]
 gi|302598760|gb|EFL65797.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS455]
          Length = 662

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/655 (54%), Positives = 474/655 (72%), Gaps = 4/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQ  AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQLQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+TI QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E +I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMSIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 606 AVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 660


>gi|78048368|ref|YP_364543.1| excinuclease ABC subunit B [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036798|emb|CAJ24491.1| excinuclease ABC subunit B [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 697

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/679 (54%), Positives = 487/679 (71%), Gaps = 10/679 (1%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
                     FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++
Sbjct: 19  PPEIRSMTDRFQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQ 78

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +Q+P +VMAPNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SS
Sbjct: 79  QVQKPTLVMAPNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSS 138

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE I++MR SAT++LL R D +VV++VS IYG+G+ E Y  + + L +G+ ++Q++L+ 
Sbjct: 139 INEHIEQMRLSATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIR 198

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            L   QY R +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ 
Sbjct: 199 HLTDLQYTRNEFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGET 258

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +R ++   +Y  +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DL
Sbjct: 259 LRKLQRYTVYPKTHYATTRERTLSAVDTIKEELKERLEQLYAQNKLVEAQRLAQRTQFDL 318

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   G C  IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD
Sbjct: 319 EMMAEVGFCNGIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGD 378

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL E+GFRLPS +DNRPLRFEEW    P +I VSATPG +E+ +  G + E ++R
Sbjct: 379 RSRKETLVEFGFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYEVRESAGEVTELVVR 438

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DP VEIR   TQV+D+  E++   + G R+L+T LTKRMAE+LTEYL E  IRVR
Sbjct: 439 PTGLIDPVVEIRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVR 498

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS++ T+ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  S
Sbjct: 499 YLHSDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGS 558

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARN+  K ILYAD IT+S+Q AIDET RRREKQ+E+N +H I P+SV+  I 
Sbjct: 559 LIQTIGRAARNLRGKAILYADKITRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPIA 618

Query: 731 EVIDPILLEDAATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
           ++++    + A   +                  ++   +    LKSL ++M+  A +L F
Sbjct: 619 DIMEGARDDAAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGKLKSLEQKMYQHAKDLEF 678

Query: 781 EEAARIRDEIKRLKSSPYF 799
           E AA+IRD+I++LK++   
Sbjct: 679 EAAAQIRDQIQKLKAASLG 697


>gi|133930529|gb|ABO43835.1| excinuclease ABC, B subunit [Lactobacillus reuteri]
          Length = 671

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/661 (52%), Positives = 466/661 (70%), Gaps = 5/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL KGI   EK Q+LLG TG+GKTFT++ VI  + +P  +++
Sbjct: 10  FELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTWILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y   ++ L++G  +E+  LL+ LV  Q+ R 
Sbjct: 130 SATTSLLERNDVIVVASVSSIFGLGDPREYQNSVLSLRVGQEIERDRLLTELVNIQFDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A R+  FG++I+ I E   LTG+ I + + + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDERALRIEFFGDEIDRIREVDALTGEVIGDRDHVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +   EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNEEVMDRALPQIEADMKKQVKKFTDEGKLLEAERIQQRTTYDIEMMREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+ GR PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRYMDGRKPGEPPYTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + +SATPG +E+EQ    + +QIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLKLPEFEQHVNQVVYMSATPGPYEMEQT-DHVAQQIIRPTGLLDPTVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+M+EDLT+YL +  +RV+Y+HS++KTLE
Sbjct: 429 VRPVMGQIDDLVGEINKRIEKNERVFVTTLTKKMSEDLTDYLKDMGLRVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----DPI 736
           N N  VI+YADT+T S+Q A+DET RRR  Q+++N++H+I P ++ + I E I       
Sbjct: 549 NENGAVIMYADTVTDSMQKAMDETKRRRTIQMKYNEEHHITPHTIIKPIQEAITVTKKAT 608

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              +A  +    D     L K+     L  L +QM  AA  L+FE+AA +RD I  LK+ 
Sbjct: 609 DEAEADNSAEFTDKDFAKLDKEAQAKMLDELTEQMRSAAKRLDFEQAATLRDTIMELKTK 668

Query: 797 P 797
            
Sbjct: 669 A 669


>gi|228961392|ref|ZP_04123006.1| UvrABC system protein B [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228798277|gb|EEM45276.1| UvrABC system protein B [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 658

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/659 (53%), Positives = 480/659 (72%), Gaps = 3/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +
Sbjct: 2   VQQFEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTL 61

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           VMA NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID+
Sbjct: 62  VMAHNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDK 121

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY
Sbjct: 122 LRHSATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQY 181

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + +
Sbjct: 182 GRNDIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHV 241

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G
Sbjct: 242 AIFPASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMG 301

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L
Sbjct: 302 FCSGIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DP
Sbjct: 362 VDHGFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P++IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+K
Sbjct: 421 PIDIRPIEGQIDDLLGEIQDCIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIK 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 481 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI    
Sbjct: 541 AARNENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATT 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +   T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 601 AAEETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|227510643|ref|ZP_03940692.1| excision endonuclease subunit UvrB [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227524803|ref|ZP_03954852.1| excision endonuclease subunit UvrB [Lactobacillus hilgardii ATCC
           8290]
 gi|227088018|gb|EEI23330.1| excision endonuclease subunit UvrB [Lactobacillus hilgardii ATCC
           8290]
 gi|227190295|gb|EEI70362.1| excision endonuclease subunit UvrB [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 667

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/663 (51%), Positives = 472/663 (71%), Gaps = 2/663 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           ++   F + + Y P+GDQP AI +L+ G+   +K Q+LLG TG+GKTFT++ VI  + +P
Sbjct: 5   ENNHKFDLVSSYQPTGDQPQAIKKLVNGVDDGKKAQILLGATGTGKTFTISNVIAQVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V++ NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++I
Sbjct: 65  TLVLSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVS I+G+G    Y   +V L++G ++E+  LL  LV  
Sbjct: 125 DQLRHSATSSLLERNDVIVVASVSSIFGLGDPTEYRNHVVSLRVGQNIERDHLLRQLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ I + E
Sbjct: 185 QYDRNDIDFQRGRFRVHGDVVEVFPASWDEHAFRIEFFGDEIDRIREVDTLTGEVIGDRE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I I+  +H++T    +  A+  I++E+  ++ + EKEG+LLEAQRL+QR TYD+EM+  
Sbjct: 245 HIAIFPATHFLTNDDVMKLALPEIQQEMDSQVSKFEKEGKLLEAQRLKQRTTYDIEMMRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    IENYSR++  R PG+PP TL ++ P+D LL VDESH T+PQI GMY GD  RK 
Sbjct: 305 MGYTSGIENYSRFMDRRKPGQPPFTLLDFFPDDYLLVVDESHQTMPQIRGMYNGDKARKE 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR  E+       I +SATPG +E++Q +  +V+QIIRPTGL+
Sbjct: 365 QLVKYGFRLPSALDNRPLRLPEFEKRVHQVIYMSATPGPYEMDQTKD-VVQQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +++R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+V+Y+HS+
Sbjct: 424 DPTIDVRPIMGQMDDLVGEINKRVDKHERVFVTTLTKKMAEDLTDYLKDLGIKVKYLHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER +IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLR++ SLIQTI
Sbjct: 484 IKTLERTQIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRA+RN +  VI+YAD++T S++ AIDET RRR  Q+++NK+H I P+++ + + + I  
Sbjct: 544 GRASRNEHGAVIMYADSVTDSMKAAIDETARRRAIQIKYNKEHGITPKTIIKPVRDAISI 603

Query: 736 IL-LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                DA   +  +++    +S K  K  L  L  +M  AA  L+FE+AA +RD I  LK
Sbjct: 604 TKSSSDAGKKDDFVESDFEQMSTKDQKNMLARLTDEMREAAKKLDFEQAATLRDTIMELK 663

Query: 795 SSP 797
           +  
Sbjct: 664 AQI 666


>gi|296269463|ref|YP_003652095.1| excinuclease ABC subunit B [Thermobispora bispora DSM 43833]
 gi|296092250|gb|ADG88202.1| excinuclease ABC, B subunit [Thermobispora bispora DSM 43833]
          Length = 702

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/681 (53%), Positives = 492/681 (72%), Gaps = 25/681 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ TD  PSGDQPAAIA+L + I + EK  +LLG TG+GKT T+A +IE +QRP +V+ 
Sbjct: 14  FQVVTDMTPSGDQPAAIAELERRIKAGEKDIVLLGATGTGKTATIAWLIERVQRPTLVIE 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ  +E +   PHNAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSINE+++R+RH
Sbjct: 74  PNKTLAAQFANELRTMLPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ R D +VV+SVSCIYG+G+ E Y+  +++LK+G  +++ +LL  LV  QY R 
Sbjct: 134 SATWSLISRRDVVVVASVSCIYGLGTPEEYANRMLRLKVGQEIDRDQLLRRLVDMQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+IE+ P + E +A R+ MFG++IE +   +PLTG+ +   + + I 
Sbjct: 194 DVSFTRGTFRVRGDTIEVIPVYQE-LAVRIEMFGDEIERLCTLHPLTGEVLGEDDEVPIL 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I+ EL  RL ELE++G+LLEAQRL  R TYD+EM+   G+C 
Sbjct: 253 PASHYVAGPERMERAIASIEAELAERLAELERQGKLLEAQRLRMRTTYDIEMMRQIGTCS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESH T+PQI  MY GD  RK TL E+
Sbjct: 313 GIENYSRHIDGRPPGSPPHTLLDYFPEDFLLVLDESHQTVPQIGAMYEGDASRKRTLVEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL++EE+      T+ +SATPG +E+ +CQG +VE +IRPTGLVDP + 
Sbjct: 373 GFRLPSALDNRPLKWEEFLERIGQTVYLSATPGPYEMSRCQGDVVELVIRPTGLVDPEIV 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ +EI + A++G R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 433 VKPTKGQIDDLMEEIRVRAERGERVLVTTLTKKMAEDLTDYLLENGIRVRYLHSEVDTLR 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIE++R+LR G +DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS+TSLIQ IGRAAR
Sbjct: 493 RIELLRELRQGDYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSETSLIQMIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V+ +V +YAD IT ++Q AIDET RRR KQL +NK H I+P+ +++KI +++D ++ ED
Sbjct: 553 HVSGQVHMYADKITPAMQRAIDETNRRRAKQLAYNKAHGIDPKPLRKKIADILDTLVRED 612

Query: 741 AATTNISIDAQQLS------------------------LSKKKGKAHLKSLRKQMHLAAD 776
           A T  +  + +Q +                        + +++ +A ++SL +QM  AA 
Sbjct: 613 ADTAQLLGNGRQQARGKAPVPGVLSQTPGKHAKEIVGEMPREQLEALIESLTEQMRAAAA 672

Query: 777 NLNFEEAARIRDEIKRLKSSP 797
           +L FE AAR+RDEIK LK   
Sbjct: 673 DLQFELAARLRDEIKELKREL 693


>gi|325130430|gb|EGC53194.1| excinuclease ABC, B subunit [Neisseria meningitidis OX99.30304]
          Length = 675

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/665 (53%), Positives = 481/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDSGKGRRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRNIK 667

Query: 795 SSPYF 799
            S  F
Sbjct: 668 ESLLF 672


>gi|229916613|ref|YP_002885259.1| excinuclease ABC, B subunit [Exiguobacterium sp. AT1b]
 gi|229468042|gb|ACQ69814.1| excinuclease ABC, B subunit [Exiguobacterium sp. AT1b]
          Length = 656

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/655 (52%), Positives = 462/655 (70%), Gaps = 6/655 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +Q+++ P GDQP AI QL++G++  ++ Q LLG TG+GKTFT++ VI+ +++P +V+
Sbjct: 5   PFALQSEFQPGGDQPEAIRQLVEGVNRGDRYQTLLGATGTGKTFTVSNVIQEVKKPTLVL 64

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 65  AHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDKLR 124

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+V+SVSCIYG+G+ E Y  +++ L++G  + + E+L  L+  QY+R
Sbjct: 125 HSATSALFERDDVIIVASVSCIYGLGNPEEYRSLVLSLRVGKEMGRDEMLRKLIDIQYER 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RG FRV GD +EIFP+  ++   R+  FG++I+ I E  PLTG+ I + + + I
Sbjct: 185 NDIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIDRIREMDPLTGEIIADRDHVAI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A+  I+ EL+ +L +  +EG+LLEAQRLEQR  YDLEM+   G C
Sbjct: 245 FPASHFVTRDEKLQKAIVNIEAELEEQLEKFREEGKLLEAQRLEQRTHYDLEMMREMGYC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L     G  P TL +Y PED LL  DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 305 SGIENYSRHLNLMPEGSTPYTLLDYFPEDFLLVADESHVTLPQVRGMYNGDQARKQVLVD 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS  DNRPL+F+E+       I +SATPG +ELE    +I EQIIRPTGL+DP +
Sbjct: 365 HGFRLPSAKDNRPLKFDEFEKKVSQAIFISATPGPYELEHTPNMI-EQIIRPTGLLDPTI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EI   + Q++ + D+I    ++  R+L+T LTK+MAEDL++YL E  I+V YMHSE+KTL
Sbjct: 424 EIHPIKGQIDYLMDQIRERIKRDERVLVTTLTKKMAEDLSDYLREAGIKVNYMHSEIKTL 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLRLGK+DVLVGINLLREGLDIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 484 ERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSDRSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VIL+AD +T S+  AI+ET RRR  Q  +N++H I PQ++++ +  VI   +  
Sbjct: 544 RNANGHVILFADKMTDSMARAIEETDRRRSIQQAYNEEHGITPQTIRKDVRGVIRATVE- 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                         ++   + +A +  L ++M  AA +L FE AA +RD I  LK
Sbjct: 603 ----AEEEALESLSTMKPAEREAAIAKLEEEMKQAARDLQFERAAELRDLILELK 653


>gi|228999910|ref|ZP_04159482.1| UvrABC system protein B [Bacillus mycoides Rock3-17]
 gi|229007463|ref|ZP_04165060.1| UvrABC system protein B [Bacillus mycoides Rock1-4]
 gi|228753851|gb|EEM03292.1| UvrABC system protein B [Bacillus mycoides Rock1-4]
 gi|228759852|gb|EEM08826.1| UvrABC system protein B [Bacillus mycoides Rock3-17]
          Length = 658

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/656 (53%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI QL+ GI++ +K Q+LLG TG+GKTFT++ VI+ +++P +VMA
Sbjct: 5   FEIVSEYSPQGDQPRAIKQLVAGINNGKKHQVLLGATGTGKTFTISNVIKEVKKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   E + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHVT+PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGSTPYTLIDYFPKDFLIVMDESHVTVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSAMDNRPLMFEEFEEKTNQVVYVSATPGPYELELTPE-VVEQIIRPTGLLDPQID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+    +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLLGEIHDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD IT+S+ +AI+ET RRR+KQ  +N++H I P+++++++ +VI      +
Sbjct: 544 NEHGHVIMYADRITRSMGIAIEETKRRRQKQEAYNEEHGITPKTIQKEVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETEVYEAGPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|239815131|ref|YP_002944041.1| excinuclease ABC subunit B [Variovorax paradoxus S110]
 gi|239801708|gb|ACS18775.1| excinuclease ABC, B subunit [Variovorax paradoxus S110]
          Length = 705

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/696 (52%), Positives = 488/696 (70%), Gaps = 5/696 (0%)

Query: 114 NPLLKNGKIWTPHRSWSINNHSK-DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQL 172
           N  + + K   P          K   + F++   Y P+GDQP AI  L++G+   E  Q 
Sbjct: 5   NEAIADLKKLDPIGPAKQGEFIKYPGSPFELFQPYPPAGDQPKAIDGLVEGVLDGEVFQT 64

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           LLGVTGSGKTFTMA VI  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYY
Sbjct: 65  LLGVTGSGKTFTMANVIARLGRPAIVFAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYY 124

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           QPEAYVP+ D +IEK+SSINE I++MR SAT+S+LER D ++V++VS IYGIG+ E Y+Q
Sbjct: 125 QPEAYVPQRDLFIEKDSSINEHIEQMRLSATKSVLERRDTVIVATVSAIYGIGTPEDYTQ 184

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
           M   +++GD + Q++++  L++ QY R +    RGTFRV GD+I++FP+   ++A R+ +
Sbjct: 185 MRFIMRVGDQIGQRDVIGRLIRMQYTRNEQDFSRGTFRVRGDTIDVFPAEHSELAIRIEL 244

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           F ++IE +  F PLTG+  + +    +Y +SHYVTPR  + +A++ IK EL  RL E   
Sbjct: 245 FDDEIETLQLFDPLTGRIRQKIPRFTVYPSSHYVTPRDKVLSAVETIKIELAERLKEFVS 304

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           +G+L+EAQRLEQR  +DLEML   G C+ IENY+R+L+G  PGEPP TL +Y+P+D+L+F
Sbjct: 305 QGKLVEAQRLEQRTRFDLEMLAEIGHCKGIENYTRHLSGAAPGEPPATLTDYLPKDALMF 364

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           +DESH  + Q+S MY GD  RK TL EYGFRLPS +DNRPL+ EE+       I VSATP
Sbjct: 365 LDESHQMVGQLSAMYNGDRARKTTLVEYGFRLPSALDNRPLKLEEFETRMRQCIFVSATP 424

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
             +E +   G +VEQ++RPTGL+DP VE+R A  QV+DV  EI +   +  R+L+T LTK
Sbjct: 425 AQYEKDHA-GNVVEQLVRPTGLIDPEVEVRPATHQVDDVLGEIRIRVDKNERVLITTLTK 483

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RMAE LT+YL +  ++VRY+HS+V T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  
Sbjct: 484 RMAEQLTDYLGDNGVKVRYLHSDVDTVERVEILRDLRLGSFDVLVGINLLREGLDIPEVS 543

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           LVAILDADKEGFLR++ SLIQTIGRAARN+N K ILYAD +T S++ AI ET RRR +Q+
Sbjct: 544 LVAILDADKEGFLRAERSLIQTIGRAARNLNGKAILYADRMTDSMKKAIGETERRRARQI 603

Query: 713 EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID---AQQLSLSKKKGKAHLKSLRK 769
            +N+ + I P+S+ +++ ++ID +  E        +D   A+   +S+K     +K L K
Sbjct: 604 AYNEANGITPRSIVKQVRDLIDGVYSEKTGKEMAKLDLERAKVEDMSEKDIAREIKRLEK 663

Query: 770 QMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
            M   A NL FE+AAR+RD++  L+   +     D+
Sbjct: 664 LMMEHARNLEFEKAARVRDQLALLREQAFGASGGDN 699


>gi|260769050|ref|ZP_05877984.1| excinuclease ABC subunit B [Vibrio furnissii CIP 102972]
 gi|260617080|gb|EEX42265.1| excinuclease ABC subunit B [Vibrio furnissii CIP 102972]
          Length = 676

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/671 (53%), Positives = 481/671 (71%), Gaps = 11/671 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y PSGDQP AI QLL G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSEYQPSGDQPEAIRQLLDGVDAGLAHQTLLGVTGSGKTFTLANVIAKAQRPTILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++++N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDAAVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG    R++    +
Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVECISIFDPLTGAIKQRDLPRFTV 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A+++IK EL  R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEHIKVELASRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLVIDESHVTVPQIGAMYKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    I +Q++RPTGL+DP +
Sbjct: 365 YGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYELEKSGNDIADQVVRPTGLLDPEL 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVEIIRDLRLGLFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  + ILYAD ITKS++ A+DET RRREKQ  +N+   I PQ++K  + ++++   + 
Sbjct: 545 RNLEGRAILYADNITKSMKKAMDETNRRREKQQAYNEAMGIQPQALKRNVKDIMELGDIT 604

Query: 740 DAATTNISI----------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            +     S            A   +++ ++ +  +  L  QM+  A +L FE AA  RD+
Sbjct: 605 KSRKQRTSKVVPLAKVAETSASYDTMTPQQLEKEINKLEAQMYKHAQDLEFELAAEKRDQ 664

Query: 790 IKRLKSSPYFQ 800
           ++ L+      
Sbjct: 665 LEALRQQFIVN 675


>gi|319794406|ref|YP_004156046.1| excinuclease ABC, b subunit [Variovorax paradoxus EPS]
 gi|315596869|gb|ADU37935.1| excinuclease ABC, B subunit [Variovorax paradoxus EPS]
          Length = 705

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/670 (54%), Positives = 484/670 (72%), Gaps = 4/670 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   Y P+GDQP AI  L+ G+   E  Q LLGVTGSGKTFTMA VI  + RPAIV
Sbjct: 31  SPFELFQPYPPAGDQPKAIQGLVDGVIDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIV 90

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I++M
Sbjct: 91  FAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQM 150

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+S+LER D ++V++VS IYGIG+ E Y+QM   +++GD + Q++++S L++ QY 
Sbjct: 151 RLSATKSVLERRDTVIVATVSAIYGIGTPEDYTQMRFIMRVGDKIGQRDVISRLIRMQYT 210

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +    RGTFRV GD+I++FP+   ++A R+ +F ++IE +  F PLTG+  + +    
Sbjct: 211 RNEQDFARGTFRVRGDTIDVFPAEHSELAIRIELFDDEIESLQLFDPLTGRIRQKIPRFT 270

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +SHYVTPR  +  A++ IK EL  RL E   +G+L+EAQRLEQR  +DLEML   G 
Sbjct: 271 VYPSSHYVTPRDKVLGAVETIKIELAERLKEFVSQGKLVEAQRLEQRTRFDLEMLAEIGH 330

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+G  PG+PP TL +Y+P+D+L+F+DESH  I Q++ MY GD  RK TL 
Sbjct: 331 CKGIENYSRHLSGAAPGDPPATLTDYLPKDALMFLDESHQMIGQLNAMYSGDRARKTTLV 390

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS MDNRPL+FEE+       I VSATP  +E +   G +VEQ++RPTGL+DP 
Sbjct: 391 EYGFRLPSAMDNRPLKFEEFEARVRQAIFVSATPAQYEKDHS-GNVVEQLVRPTGLIDPE 449

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R A  QV+DV  EI +  ++  R+L+T LTKRMAE LT+YL +  ++VRY+HS+V T
Sbjct: 450 VEVRPATHQVDDVLGEIRIRVEKNERVLITTLTKRMAEQLTDYLGDNGVKVRYLHSDVDT 509

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 510 VERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA 569

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN++ K ILYAD +T S++ AIDET RRR +Q+ HN+ + I P+S+ +++ ++ID +  
Sbjct: 570 ARNLHGKAILYADRMTDSMKKAIDETERRRARQIAHNEANGITPRSIVKQVRDLIDGVYS 629

Query: 739 EDAATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           E        +D   A+   +S+K     +K L K M   A NL FE+AAR+RD++  L+ 
Sbjct: 630 EKTGKEMAKLDLERAKVEDMSEKDIAREIKRLEKLMLEHARNLEFEKAARVRDQLALLRE 689

Query: 796 SPYFQGLDDS 805
             +     D+
Sbjct: 690 QAFGASGGDN 699


>gi|228993874|ref|ZP_04153777.1| UvrABC system protein B [Bacillus pseudomycoides DSM 12442]
 gi|228765825|gb|EEM14476.1| UvrABC system protein B [Bacillus pseudomycoides DSM 12442]
          Length = 658

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/656 (53%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI QL+ GI++ +K Q+LLG TG+GKTFT++ VI+ +++P +VMA
Sbjct: 5   FEIVSEYSPQGDQPRAIQQLVAGINNGKKHQVLLGATGTGKTFTISNVIKEVKKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   E + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHVT+PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGSTPYTLIDYFPKDFLIVMDESHVTVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSAMDNRPLMFEEFEEKTNQVVYVSATPGPYELELTPE-VVEQIIRPTGLLDPQID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+    +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLLGEIHDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD IT+S+ +AI+ET RRR+KQ  +N++H I P+++++++ +VI      +
Sbjct: 544 NEHGHVIMYADRITRSMGIAIEETKRRRQKQEAYNEEHGITPKTIQKEVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETEVYEAGPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|86147958|ref|ZP_01066262.1| excinuclease ABC subunit B [Vibrio sp. MED222]
 gi|85834283|gb|EAQ52437.1| excinuclease ABC subunit B [Vibrio sp. MED222]
          Length = 676

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/671 (53%), Positives = 482/671 (71%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + +DY PSGDQP AI +LL G+ S    Q LLGVTGSGKTFT+A VI   QRPAI+
Sbjct: 3   KLFDLVSDYSPSGDQPTAITKLLDGLDSGLAHQTLLGVTGSGKTFTLANVISQSQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  +SY +M++ L  G+ ++Q+++L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPKSYLKMMLHLSRGEVMDQRDILRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RG FRV G+ I+IFP+  +  A R+ MF ++++ IS F PLTG    R++   
Sbjct: 183 RNDVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEVDCISIFDPLTGAVKQRDLPRF 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  +HYVTPR  +  A++ IK+EL+ R   L+   +LLE QR+ QR  +D+EM+   G
Sbjct: 243 TVYPKTHYVTPREKILEAIEKIKDELRDRAQYLKDNNKLLEEQRISQRTQFDIEMMTELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GE PPTLF+Y+P+D LL +DESHVT+PQI  MY+GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRAEGEAPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRP++FEE+  + P TI VSATPG++E+E+  G I +Q++RPTGL+DP
Sbjct: 363 VEFGFRLPSALDNRPMKFEEFESIAPQTIFVSATPGNYEIEKSDGEIADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI + + +  R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ 
Sbjct: 423 IIEVRPVATQVDDLLSEIRIRSVKEERVLVTTLTKRMAEDLTEYLSEHGVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+  + ILY D+ITKS++ AIDET RRREKQ  +N++  I PQ++K  I ++++   
Sbjct: 543 AARNLEGRAILYGDSITKSMRKAIDETDRRREKQQAYNEEQGITPQALKRNIKDIMELGD 602

Query: 738 LEDAATTNISI----------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           L  +     S               + L+ ++    +  L   M+  A NL FE AA+ R
Sbjct: 603 LTKSKQQRQSKQVPLSKVAEPSESYVVLTPQQLDKEISKLEAAMYQHAQNLEFELAAQKR 662

Query: 788 DEIKRLKSSPY 798
           DEI++L+    
Sbjct: 663 DEIEQLRKQFI 673


>gi|49483015|ref|YP_040239.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|57650099|ref|YP_185697.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           COL]
 gi|257424878|ref|ZP_05601305.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427546|ref|ZP_05603945.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430177|ref|ZP_05606561.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432878|ref|ZP_05609238.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435782|ref|ZP_05611830.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           M876]
 gi|258452966|ref|ZP_05700960.1| excinuclease ABC subunit B [Staphylococcus aureus A5948]
 gi|262049542|ref|ZP_06022412.1| excinuclease ABC subunit B [Staphylococcus aureus D30]
 gi|282903388|ref|ZP_06311279.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905168|ref|ZP_06313025.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282910404|ref|ZP_06318208.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913599|ref|ZP_06321388.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918551|ref|ZP_06326288.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           C427]
 gi|282923517|ref|ZP_06331197.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           C101]
 gi|283957590|ref|ZP_06375043.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293500643|ref|ZP_06666494.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509591|ref|ZP_06668302.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           M809]
 gi|293524177|ref|ZP_06670864.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           M1015]
 gi|294850544|ref|ZP_06791272.1| excinuclease ABC [Staphylococcus aureus A9754]
 gi|295427335|ref|ZP_06819970.1| excinuclease ABC [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|56749752|sp|Q6GIN3|UVRB_STAAR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|71153394|sp|Q5HHR0|UVRB_STAAC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|49241144|emb|CAG39822.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|57284285|gb|AAW36379.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           COL]
 gi|257272448|gb|EEV04571.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275739|gb|EEV07212.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279374|gb|EEV09975.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282293|gb|EEV12428.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284973|gb|EEV15092.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           M876]
 gi|257859477|gb|EEV82331.1| excinuclease ABC subunit B [Staphylococcus aureus A5948]
 gi|259162378|gb|EEW46950.1| excinuclease ABC subunit B [Staphylococcus aureus D30]
 gi|282314385|gb|EFB44775.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           C101]
 gi|282317685|gb|EFB48057.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           C427]
 gi|282322631|gb|EFB52953.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325796|gb|EFB56104.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282331575|gb|EFB61087.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596343|gb|EFC01304.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           C160]
 gi|283791041|gb|EFC29856.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290921140|gb|EFD98201.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095648|gb|EFE25909.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467688|gb|EFF10203.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           M809]
 gi|294822623|gb|EFG39064.1| excinuclease ABC [Staphylococcus aureus A9754]
 gi|295128723|gb|EFG58354.1| excinuclease ABC [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|329313479|gb|AEB87892.1| UvrABC system protein B [Staphylococcus aureus subsp. aureus T0131]
          Length = 663

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 473/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 8   PFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 67

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 68  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 127

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 128 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 187

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I
Sbjct: 188 NDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAI 247

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 248 FPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 307

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 308 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVD 367

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 368 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHT-DKMVEQIIRPTGLLDPKI 426

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 427 EVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 486

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 487 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 546

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   + E
Sbjct: 547 RNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATV-E 605

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +    + +       ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 606 NDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAE 662


>gi|229014325|ref|ZP_04171444.1| UvrABC system protein B [Bacillus mycoides DSM 2048]
 gi|229063814|ref|ZP_04200118.1| UvrABC system protein B [Bacillus cereus AH603]
 gi|229135970|ref|ZP_04264731.1| UvrABC system protein B [Bacillus cereus BDRD-ST196]
 gi|229169869|ref|ZP_04297565.1| UvrABC system protein B [Bacillus cereus AH621]
 gi|228613583|gb|EEK70712.1| UvrABC system protein B [Bacillus cereus AH621]
 gi|228647512|gb|EEL03586.1| UvrABC system protein B [Bacillus cereus BDRD-ST196]
 gi|228716451|gb|EEL68155.1| UvrABC system protein B [Bacillus cereus AH603]
 gi|228746925|gb|EEL96809.1| UvrABC system protein B [Bacillus mycoides DSM 2048]
          Length = 658

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/657 (54%), Positives = 478/657 (72%), Gaps = 3/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ ++Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VM
Sbjct: 4   PFEIISEYSPQGDQPGAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSE K+FFP+N+VEYFVSYYDYYQPEAYVP TDT+IEK++ IN++ID++R
Sbjct: 64  AHNKTLAGQLYSELKDFFPNNSVEYFVSYYDYYQPEAYVPHTDTFIEKDAQINDEIDKLR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT SL ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R
Sbjct: 124 HSATSSLFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I
Sbjct: 184 NDIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C
Sbjct: 244 FPASHFVTREEKLKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L +
Sbjct: 304 SGIENYSRHLTLRPAGSTPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVD 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL F+E+       I VSATPG +ELEQ     +EQIIRPTGL+DPP+
Sbjct: 364 HGFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSP-KAIEQIIRPTGLLDPPI 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           +IR    Q++D+  EI+    +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTL
Sbjct: 423 DIRPIEGQIDDLLGEIHDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTL 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 483 ERIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N +VI+YAD IT+S+ +AI+ET RRR  Q  +N+KH I P+++++ + +VI      
Sbjct: 543 RNANGRVIMYADRITRSMGIAIEETQRRRSIQEAYNEKHGITPKTIQKGVRDVIRATTAA 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +      +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 603 EDTEIYEATPAKK--MTKKERENTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|258423407|ref|ZP_05686298.1| excinuclease ABC, B subunit [Staphylococcus aureus A9635]
 gi|257846468|gb|EEV70491.1| excinuclease ABC, B subunit [Staphylococcus aureus A9635]
          Length = 663

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/657 (52%), Positives = 473/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 8   PFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 67

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 68  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 127

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 128 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 187

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I
Sbjct: 188 NDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAI 247

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    +  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 248 FPASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 307

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 308 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVD 367

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 368 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHT-DKMVEQIIRPTGLLDPKI 426

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 427 EVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 486

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 487 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 546

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   + E
Sbjct: 547 RNDRGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATV-E 605

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +    + +       ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 606 NDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAE 662


>gi|194468167|ref|ZP_03074153.1| excinuclease ABC, B subunit [Lactobacillus reuteri 100-23]
 gi|194453020|gb|EDX41918.1| excinuclease ABC, B subunit [Lactobacillus reuteri 100-23]
          Length = 671

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/661 (52%), Positives = 467/661 (70%), Gaps = 5/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL KGI   EK Q+LLG TG+GKTFT++ VI  + +P ++++
Sbjct: 10  FELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y   ++ L++G  +E+  LL+ LV  Q+ R 
Sbjct: 130 SATTSLLERNDVIVVASVSSIFGLGDPREYQNSVLSLRVGQEIERDRLLTELVNIQFDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E   LTG+ I + + + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDEIDRIREVDALTGEVIGDRDHVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +   EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNEEVMDRALPQIEADMKKQVKKFTDEGKLLEAERIQQRTTYDIEMMREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+ GR PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRYMDGRKPGEPPYTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + +SATPG +E+EQ    + +QIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLKLPEFEQHVNQVVYMSATPGPYEMEQT-DHVTQQIIRPTGLLDPTVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+M+EDLT+YL +  ++V+Y+HS++KTLE
Sbjct: 429 VRPVMGQIDDLVGEINKRIEKNERVFVTTLTKKMSEDLTDYLKDMGLKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----DPI 736
           N N  VI+YADT+T S+Q A+DET RRR  Q+++N++H+I P ++ + I E I       
Sbjct: 549 NENGAVIMYADTVTDSMQKAMDETKRRRTIQMKYNEEHHITPHTIIKPIQEAITVTKKAT 608

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              +A  +    D     L K+     L  L +QM  AA  L+FE+AA +RD I  LK+ 
Sbjct: 609 DEIEADNSAEFTDKDFAKLDKEAQAKMLDELTEQMRSAAKRLDFEQAATLRDTIMELKTK 668

Query: 797 P 797
            
Sbjct: 669 A 669


>gi|82750463|ref|YP_416204.1| excinuclease ABC subunit B [Staphylococcus aureus RF122]
 gi|82655994|emb|CAI80399.1| exinuclease ABC subunit B [Staphylococcus aureus RF122]
          Length = 663

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 473/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 8   PFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 67

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 68  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 127

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 128 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 187

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I
Sbjct: 188 NDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAI 247

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 248 FPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 307

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 308 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVD 367

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 368 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHT-DKMVEQIIRPTGLLDPKI 426

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 427 EVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 486

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 487 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 546

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I    +E
Sbjct: 547 RNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLI-SANVE 605

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +    + +       ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 606 NDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAE 662


>gi|312829250|emb|CBX34092.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           ECT-R 2]
          Length = 661

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 472/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P GDQP AI +++ GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKIHSDFEPKGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 126 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVD 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 366 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHT-DKMVEQIIRPTGLLDPKI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 EVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   + E
Sbjct: 545 RNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATV-E 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +    + +       ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 604 NDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAE 660


>gi|302390209|ref|YP_003826030.1| Excinuclease ABC subunit B [Thermosediminibacter oceani DSM 16646]
 gi|302200837|gb|ADL08407.1| Excinuclease ABC subunit B [Thermosediminibacter oceani DSM 16646]
          Length = 671

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/661 (55%), Positives = 475/661 (71%), Gaps = 2/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +++ P GDQP AIA L +GI    K Q LLG TG+GKTFT+A +IE +Q+P +
Sbjct: 1   MGEFRVVSEFTPKGDQPKAIAALSEGIRKGYKFQTLLGATGTGKTFTIANLIEKVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LA QL SE K FFP+NAVEYFVSYYDYYQPEAY+P+TDTYIEK++SIN++ID+
Sbjct: 61  VIAHNKTLAGQLCSELKEFFPNNAVEYFVSYYDYYQPEAYIPQTDTYIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D ++V+SVSCIY +GS   Y   ++ L+ G   ++ E++  LV+ QY
Sbjct: 121 LRHSATAALFERRDVVIVASVSCIYSLGSPVDYENQVISLRPGMVKDRDEIIRRLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R +    R TFRV GD +EI+P+   + A RV  FG+ I+ I+E   LTG+ +     +
Sbjct: 181 TRNEFEFSRNTFRVHGDILEIYPASFTERAIRVEFFGDVIDRITEIDTLTGEVMGERTHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYVTPR  L  A+K IKEEL+ RL EL  +G+LLEA RLEQR  YD+EML  TG
Sbjct: 241 SIFPASHYVTPRDKLEAAIKSIKEELEERLAELRAKGKLLEAARLEQRTNYDIEMLRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSR+LTGR PGEPP TL +Y P D L+ +DESHVTIPQ+  M+ GD  RK  L
Sbjct: 301 YCKGIENYSRHLTGRKPGEPPFTLLDYFPRDYLIIIDESHVTIPQLRAMWAGDRSRKEAL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL FEE+       I +SATPG +ELE+    +VEQIIRPTGLVDP
Sbjct: 361 VEHGFRLPSAFDNRPLTFEEFEERINQVIFLSATPGPYELEKS-SQVVEQIIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R  + Q++D+  EI   A++  R+L+T LTK+MAEDL +YL E  I+V+Y+HSE+ 
Sbjct: 420 EVEVRPTKGQIDDLIGEIRKRAEKDQRVLVTTLTKKMAEDLCDYLRESGIKVKYLHSEIN 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++I+RDLRLGKFD LVG+NLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERLQILRDLRLGKFDCLVGVNLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VI+YADTIT+S+  AI ET RRR  Q+E+N+KH I P +VK+ I E+I+   
Sbjct: 540 AARNAEGRVIMYADTITESMARAISETNRRRMIQMEYNRKHGIVPTTVKKGIREMIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             +     +  +     +SKK+ KA+L  L K+M  AA NL FE AA++RD I  +K+  
Sbjct: 600 AAEERADYL-PEKDLARMSKKELKAYLDKLEKEMKQAARNLEFERAAQLRDIIFEIKAQA 658

Query: 798 Y 798
           +
Sbjct: 659 F 659


>gi|298694090|gb|ADI97312.1| exinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           ED133]
 gi|323441393|gb|EGA99051.1| excinuclease ABC subunit B [Staphylococcus aureus O46]
          Length = 661

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 473/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 126 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVD 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 366 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHT-DKMVEQIIRPTGLLDPKI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 EVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   + E
Sbjct: 545 RNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATV-E 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +    + +       ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 604 NDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAE 660


>gi|148358232|ref|YP_001249439.1| excinuclease ABC subunit B [Legionella pneumophila str. Corby]
 gi|296105585|ref|YP_003617285.1| excinuclease ABC subunit B [Legionella pneumophila 2300/99 Alcoy]
 gi|189037981|sp|A5I9P3|UVRB_LEGPC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|148280005|gb|ABQ54093.1| excinuclease ABC subunit B [Legionella pneumophila str. Corby]
 gi|295647486|gb|ADG23333.1| excinuclease ABC subunit B [Legionella pneumophila 2300/99 Alcoy]
          Length = 663

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/659 (55%), Positives = 479/659 (72%), Gaps = 1/659 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ ++Y P+GDQP AIA L+ G+ S    Q LLGVTGSGKTFT+A VI+AM+RP ++M
Sbjct: 4   LFKIYSNYQPAGDQPTAIASLIDGLESGLAKQTLLGVTGSGKTFTIAHVIQAMKRPTLIM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR
Sbjct: 64  APNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+V++VS IYG+G  +SY +M++ L  G+  +Q+++L  L + QY R
Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMLLHLSRGEQSDQRKILKRLAEMQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++ + RG FRV GD I+IFP+  E  A R+ +F ++++ I+ F PLTG+ ++ +  + I
Sbjct: 184 TNLSLERGQFRVHGDVIDIFPADSEKEAIRIELFDDEVDNIARFDPLTGEILQRLPRVTI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  +HYVTPR  +   ++ +K EL+ RL EL  + +L+EAQRLEQR  +D+EM+   G C
Sbjct: 244 FPKTHYVTPRERILETVEKVKAELQERLAELNAQNKLVEAQRLEQRTCFDIEMMLELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+ R  GE PPTLF+Y+P D+LL +DESHVT+PQI GMYRGD  RK TL  
Sbjct: 304 SGIENYSRYLSNREAGEAPPTLFDYLPPDALLIIDESHVTVPQIGGMYRGDRARKETLVN 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+    P TI +SATPG +E E     + EQ++RPTGL+DP V
Sbjct: 364 YGFRLPSALDNRPLRFEEFEERSPQTIYISATPGPYEQEHSDN-VAEQVVRPTGLIDPEV 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR  +TQV+D+  EI     QG RIL+T LTKRMAEDLTEYL E  I+VRY+HS+V T+
Sbjct: 423 EIRPVKTQVDDLMSEIRQVIAQGSRILVTTLTKRMAEDLTEYLSEHGIKVRYLHSDVDTV 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 483 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  + ILYADT+T S+Q A+ ET RRREKQ   N KH I P+ + + + ++++   + 
Sbjct: 543 RNVKGRAILYADTMTGSMQRALMETERRREKQKAFNLKHGITPKGINKSVEDILEGAYIG 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
              T       +    S ++    + +L KQM+  A N+ FE AA+IRDE   LK    
Sbjct: 603 KRKTMVAEQAPRYTHWSPQELAKQINALEKQMYAHAQNMEFELAAKIRDEYLLLKEQLM 661


>gi|331007859|ref|ZP_08330951.1| Excinuclease ABC subunit B [gamma proteobacterium IMCC1989]
 gi|330418330|gb|EGG92904.1| Excinuclease ABC subunit B [gamma proteobacterium IMCC1989]
          Length = 666

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/659 (55%), Positives = 487/659 (73%), Gaps = 6/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +DY P+GDQP AI  L+KGI +    Q LLGVTGSGKTFT+A V++ + RP IVM 
Sbjct: 5   FNVVSDYTPAGDQPKAIESLIKGIRNGLAHQTLLGVTGSGKTFTIANVVQEINRPTIVMV 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D I+V++VS IYG+G  E+Y +M++ +  G+ V+Q+++L  L + QY R 
Sbjct: 125 SATKALMERTDTIIVATVSAIYGLGDPEAYLKMVLHIDRGEKVDQRDILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R T+RV GD I++FP+  +  A R+ +F +++E+++ F PLTG+ ++ +    IY
Sbjct: 185 DAVFQRATYRVRGDVIDVFPADSDREALRIELFDDEVEQLTLFDPLTGESLQKMPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  +  A+++IK E K RL +L    +L+EAQRLEQR+ YD+EM++  G C 
Sbjct: 245 PKSHYVTPRSRILEAIEHIKAEAKERLEQLRSVNKLVEAQRLEQRVKYDVEMMQELGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSRYL+GR+PG PPPTLF+Y+P D+LL +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 305 GVENYSRYLSGRDPGLPPPTLFDYLPPDALLVLDESHVTVPQIGGMYRGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEEW  L P  I VSATPG++E E     IVEQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEWEELAPQMIFVSATPGNYEAEHAAQ-IVEQVVRPTGLIDPVIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IRSA TQV++   EI        RIL+TVLTKRMAEDLT+YL +  +RVRY+HS++ T+E
Sbjct: 424 IRSADTQVDEAMSEIAKRVAVDERILITVLTKRMAEDLTDYLSDHGVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LV I+DADKEGFLRS  SLIQTIGRAAR
Sbjct: 484 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVMIMDADKEGFLRSDRSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++N K IL+A+ IT S+Q AIDET RRR KQ+ HNK+H I P  VK+KI ++++  ++  
Sbjct: 544 HLNGKAILFANKITNSMQRAIDETDRRRTKQVAHNKEHGITPTGVKKKIADIMEGAVVVG 603

Query: 741 AATTNISIDAQQLS-----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   + +        L  K  K  +  L ++M+ AA +L+FE AA +RD+IK+LK
Sbjct: 604 KGKRGKISEKEASYNLHPELEGKSLKQKIALLDEKMYQAAKDLDFERAASLRDQIKQLK 662


>gi|2909345|emb|CAA74675.1| ultraviolet resistance protein [Neisseria meningitidis]
          Length = 675

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/665 (54%), Positives = 482/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ RND I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P TI VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDSGKGRRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRNIK 667

Query: 795 SSPYF 799
            +  F
Sbjct: 668 ENLLF 672


>gi|325201958|gb|ADY97412.1| excinuclease ABC, B subunit [Neisseria meningitidis M01-240149]
          Length = 675

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/665 (53%), Positives = 481/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDSGKGRRQGKNKVKVGEIHNEEDTIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRNIK 667

Query: 795 SSPYF 799
            S  F
Sbjct: 668 ESLLF 672


>gi|87160625|ref|YP_493443.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|161509027|ref|YP_001574686.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141224|ref|ZP_03565717.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253731387|ref|ZP_04865552.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|284023780|ref|ZP_06378178.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           132]
 gi|304381621|ref|ZP_07364271.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|87126599|gb|ABD21113.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|160367836|gb|ABX28807.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253724912|gb|EES93641.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|269940335|emb|CBI48712.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           TW20]
 gi|283470051|emb|CAQ49262.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           ST398]
 gi|302750655|gb|ADL64832.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304339984|gb|EFM05928.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|315196435|gb|EFU26786.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320139907|gb|EFW31768.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320142002|gb|EFW33830.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329723820|gb|EGG60348.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           21189]
 gi|329729697|gb|EGG66098.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           21193]
          Length = 661

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 473/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 126 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVD 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 366 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHT-DKMVEQIIRPTGLLDPKI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 EVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   + E
Sbjct: 545 RNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATV-E 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +    + +       ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 604 NDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAE 660


>gi|325134430|gb|EGC57075.1| excinuclease ABC, B subunit [Neisseria meningitidis M13399]
          Length = 699

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/665 (53%), Positives = 480/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 33  SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 92

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 93  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 152

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 153 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 212

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    
Sbjct: 213 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYT 272

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A   IKEEL+ R+    KE R +E QR+EQR  +DLEML   G 
Sbjct: 273 VFPSSHYVTPRDTVLRACDSIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGF 332

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 333 CKGIENYSRHFSGKKEGEPPPTLMDYLPSNTIMFIDESHVTVTQIGGMYKGDASRKQNLV 392

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 393 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 451

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 452 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 511

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 512 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 571

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 572 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 631

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+  +        ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 632 EEDGSKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRDIK 691

Query: 795 SSPYF 799
            +  F
Sbjct: 692 ENLLF 696


>gi|15923748|ref|NP_371282.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926435|ref|NP_373968.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           N315]
 gi|156979086|ref|YP_001441345.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257794921|ref|ZP_05643900.1| excinuclease ABC, B subunit [Staphylococcus aureus A9781]
 gi|258418237|ref|ZP_05682502.1| excinuclease ABC subunit B [Staphylococcus aureus A9763]
 gi|258421534|ref|ZP_05684459.1| excinuclease ABC, B subunit [Staphylococcus aureus A9719]
 gi|258430729|ref|ZP_05688441.1| exinuclease ABC subunit B [Staphylococcus aureus A9299]
 gi|258440950|ref|ZP_05690785.1| exinuclease ABC subunit B [Staphylococcus aureus A8115]
 gi|258445780|ref|ZP_05693957.1| exinuclease ABC subunit B [Staphylococcus aureus A6300]
 gi|258449591|ref|ZP_05697693.1| exinuclease ABC subunit B [Staphylococcus aureus A6224]
 gi|258453991|ref|ZP_05701963.1| exinuclease ABC subunit B [Staphylococcus aureus A5937]
 gi|282895054|ref|ZP_06303275.1| excinuclease ABC, B subunit [Staphylococcus aureus A8117]
 gi|282926624|ref|ZP_06334254.1| excinuclease ABC, B subunit [Staphylococcus aureus A10102]
 gi|295406480|ref|ZP_06816286.1| excinuclease ABC [Staphylococcus aureus A8819]
 gi|297245206|ref|ZP_06929080.1| excinuclease ABC [Staphylococcus aureus A8796]
 gi|54039843|sp|P67425|UVRB_STAAN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|54042751|sp|P67424|UVRB_STAAM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|13700649|dbj|BAB41946.1| exinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246527|dbj|BAB56920.1| exinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156721221|dbj|BAF77638.1| exinuclease ABC subunit B [Staphylococcus aureus subsp. aureus Mu3]
 gi|257788893|gb|EEV27233.1| excinuclease ABC, B subunit [Staphylococcus aureus A9781]
 gi|257839030|gb|EEV63509.1| excinuclease ABC subunit B [Staphylococcus aureus A9763]
 gi|257842460|gb|EEV66884.1| excinuclease ABC, B subunit [Staphylococcus aureus A9719]
 gi|257849401|gb|EEV73371.1| exinuclease ABC subunit B [Staphylococcus aureus A9299]
 gi|257852464|gb|EEV76385.1| exinuclease ABC subunit B [Staphylococcus aureus A8115]
 gi|257855356|gb|EEV78294.1| exinuclease ABC subunit B [Staphylococcus aureus A6300]
 gi|257857099|gb|EEV79998.1| exinuclease ABC subunit B [Staphylococcus aureus A6224]
 gi|257863856|gb|EEV86612.1| exinuclease ABC subunit B [Staphylococcus aureus A5937]
 gi|282591517|gb|EFB96589.1| excinuclease ABC, B subunit [Staphylococcus aureus A10102]
 gi|282762550|gb|EFC02689.1| excinuclease ABC, B subunit [Staphylococcus aureus A8117]
 gi|285816460|gb|ADC36947.1| Excinuclease ABC subunit B [Staphylococcus aureus 04-02981]
 gi|294968625|gb|EFG44648.1| excinuclease ABC [Staphylococcus aureus A8819]
 gi|297177877|gb|EFH37126.1| excinuclease ABC [Staphylococcus aureus A8796]
          Length = 663

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 472/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P GDQP AI +++ GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 8   PFKIHSDFEPQGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 67

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 68  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 127

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 128 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 187

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I
Sbjct: 188 NDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAI 247

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 248 FPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 307

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 308 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVD 367

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 368 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHT-DKMVEQIIRPTGLLDPKI 426

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 427 EVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 486

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 487 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 546

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   + E
Sbjct: 547 RNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATV-E 605

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +    + +       ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 606 NDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAE 662


>gi|225568545|ref|ZP_03777570.1| hypothetical protein CLOHYLEM_04622 [Clostridium hylemonae DSM
           15053]
 gi|225162773|gb|EEG75392.1| hypothetical protein CLOHYLEM_04622 [Clostridium hylemonae DSM
           15053]
          Length = 660

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/658 (51%), Positives = 470/658 (71%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + ++Y P+GDQP AI  L+KG     + Q LLGVTGSGKTFTMA VI+ + +P +
Sbjct: 1   MDHFNLVSEYSPTGDQPQAIEALVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID+
Sbjct: 61  IIAHNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D ++++SVSCIYG+GS   Y +M++ L+ G   ++ +++  L+  QY
Sbjct: 121 LRHSATAALSERRDVVIIASVSCIYGLGSPIDYQEMVISLRPGMIKDRDDIIRKLIDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RGTFRV GD +E+ P+  +    R+  FG+++E I+E   LTG+    +  I
Sbjct: 181 DRNEMDFKRGTFRVRGDVLEVIPAMNDCDVIRIEFFGDEVERITEVDALTGEIKNELNHI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV  + ++  A+K I+ EL+ ++   + +G+LLEAQR+ +R  +D+EM+  TG
Sbjct: 241 AIFPASHYVVSKESMERAVKEIEVELEEQIQYFKSKGKLLEAQRISERTNFDIEMMRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTG  PG+PP TL +Y P+D ++ +DESH T+PQI GMY GD  RK+TL
Sbjct: 301 FCSGIENYSRHLTGLAPGQPPHTLIDYFPDDFIMMIDESHKTVPQIGGMYHGDQSRKSTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL FEE+       + VSATPG +E E  + +  EQ+IRPTGL+DP
Sbjct: 361 VDYGFRLPSAKDNRPLSFEEFEGKLNQVMFVSATPGRYEAEH-ELLRAEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++D+  E+N    +  +IL+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ 
Sbjct: 420 EVEVRPVEGQIDDLVGEVNREVAKKNKILITTLTKRMAEDLTDYMRELGIRVKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EI+RD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TLERTEIVRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSEVSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD +T S++LA++ET RRR+ Q+++N++H I PQ++++ + ++I   +
Sbjct: 540 AARNSEGHVIMYADKVTDSMRLALEETKRRRQIQMKYNEEHGITPQTIQKAVRDLI--SI 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +  AT  + ++    S+S+K+    +K + K+M  AA  LNFE AA +RD++  LK 
Sbjct: 598 SKKVATEEMRLEKDPESMSRKELDKLIKEVTKRMKTAAAELNFEAAAELRDKLVELKK 655


>gi|261401276|ref|ZP_05987401.1| excinuclease ABC subunit B [Neisseria lactamica ATCC 23970]
 gi|269208761|gb|EEZ75216.1| excinuclease ABC subunit B [Neisseria lactamica ATCC 23970]
          Length = 675

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/665 (54%), Positives = 482/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIARSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ RND I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIEFFTREQRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPK 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVVTQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDSGKGRRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRNIK 667

Query: 795 SSPYF 799
            S  F
Sbjct: 668 ESMLF 672


>gi|148267218|ref|YP_001246161.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393267|ref|YP_001315942.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           JH1]
 gi|255005549|ref|ZP_05144150.2| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|269202379|ref|YP_003281648.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           ED98]
 gi|296275167|ref|ZP_06857674.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           MR1]
 gi|147740287|gb|ABQ48585.1| Excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945719|gb|ABR51655.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           JH1]
 gi|262074669|gb|ACY10642.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           ED98]
 gi|315129444|gb|EFT85437.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329724619|gb|EGG61126.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           21172]
          Length = 661

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 472/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P GDQP AI +++ GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKIHSDFEPQGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 126 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVD 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 366 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHT-DKMVEQIIRPTGLLDPKI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 EVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   + E
Sbjct: 545 RNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATV-E 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +    + +       ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 604 NDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAE 660


>gi|30265192|ref|NP_847569.1| excinuclease ABC subunit B [Bacillus anthracis str. Ames]
 gi|47530708|ref|YP_022057.1| excinuclease ABC subunit B [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188002|ref|YP_031255.1| excinuclease ABC subunit B [Bacillus anthracis str. Sterne]
 gi|165869973|ref|ZP_02214630.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0488]
 gi|167635308|ref|ZP_02393623.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0442]
 gi|167640500|ref|ZP_02398763.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0193]
 gi|170688009|ref|ZP_02879222.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0465]
 gi|170707782|ref|ZP_02898233.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0389]
 gi|177652930|ref|ZP_02935257.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0174]
 gi|227817925|ref|YP_002817934.1| excinuclease ABC, B subunit [Bacillus anthracis str. CDC 684]
 gi|229124671|ref|ZP_04253852.1| UvrABC system protein B [Bacillus cereus 95/8201]
 gi|229602325|ref|YP_002869386.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0248]
 gi|254686407|ref|ZP_05150266.1| excinuclease ABC subunit B [Bacillus anthracis str. CNEVA-9066]
 gi|254724407|ref|ZP_05186191.1| excinuclease ABC subunit B [Bacillus anthracis str. A1055]
 gi|254735613|ref|ZP_05193320.1| excinuclease ABC subunit B [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744300|ref|ZP_05201980.1| excinuclease ABC subunit B [Bacillus anthracis str. Kruger B]
 gi|254755598|ref|ZP_05207631.1| excinuclease ABC subunit B [Bacillus anthracis str. Vollum]
 gi|254757053|ref|ZP_05209081.1| excinuclease ABC subunit B [Bacillus anthracis str. Australia 94]
 gi|81837855|sp|Q81X47|UVRB_BACAN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|30259869|gb|AAP29055.1| excinuclease ABC, B subunit [Bacillus anthracis str. Ames]
 gi|47505856|gb|AAT34532.1| excinuclease ABC, B subunit [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181929|gb|AAT57305.1| excinuclease ABC, B subunit [Bacillus anthracis str. Sterne]
 gi|164714296|gb|EDR19816.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0488]
 gi|167511543|gb|EDR86926.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0193]
 gi|167529351|gb|EDR92103.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0442]
 gi|170127339|gb|EDS96215.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0389]
 gi|170668118|gb|EDT18868.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0465]
 gi|172081705|gb|EDT66775.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0174]
 gi|227002808|gb|ACP12551.1| excinuclease ABC, B subunit [Bacillus anthracis str. CDC 684]
 gi|228658766|gb|EEL14425.1| UvrABC system protein B [Bacillus cereus 95/8201]
 gi|229266733|gb|ACQ48370.1| excinuclease ABC, B subunit [Bacillus anthracis str. A0248]
          Length = 658

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|229032779|ref|ZP_04188737.1| UvrABC system protein B [Bacillus cereus AH1271]
 gi|228728547|gb|EEL79565.1| UvrABC system protein B [Bacillus cereus AH1271]
          Length = 658

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +NK+H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNKEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 EPETYEAAPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|229199283|ref|ZP_04325951.1| UvrABC system protein B [Bacillus cereus m1293]
 gi|228584208|gb|EEK42358.1| UvrABC system protein B [Bacillus cereus m1293]
          Length = 658

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|229153321|ref|ZP_04281499.1| UvrABC system protein B [Bacillus cereus m1550]
 gi|228629925|gb|EEK86576.1| UvrABC system protein B [Bacillus cereus m1550]
          Length = 658

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADCITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|21282449|ref|NP_645537.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485630|ref|YP_042851.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|23822291|sp|Q8NXM0|UVRB_STAAW RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56749723|sp|Q6GB72|UVRB_STAAS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|21203886|dbj|BAB94585.1| exinuclease ABC subunit B [Staphylococcus aureus subsp. aureus MW2]
 gi|49244073|emb|CAG42499.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 663

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 473/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 8   PFKIHSDFEPQGDQPQAIEEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 67

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 68  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 127

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 128 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 187

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I
Sbjct: 188 NDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAI 247

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 248 FPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 307

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 308 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVD 367

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 368 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHT-DKMVEQIIRPTGLLDPKI 426

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 427 EVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 486

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 487 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 546

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   + E
Sbjct: 547 RNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATV-E 605

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +    + +       ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 606 NDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAE 662


>gi|118463533|ref|YP_882325.1| excinuclease ABC subunit B [Mycobacterium avium 104]
 gi|118164820|gb|ABK65717.1| excinuclease ABC, B subunit [Mycobacterium avium 104]
          Length = 722

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/706 (51%), Positives = 481/706 (68%), Gaps = 29/706 (4%)

Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185
               ++    +    F++ + + P+GDQPAAI +L + I + E+  +LLG TG+GK+ T 
Sbjct: 17  PAEEAVEGLVRAGGRFEVVSPHAPAGDQPAAIDELERRIRAGERDVVLLGATGTGKSATT 76

Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           A +IE +QRP +VMAPNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYI
Sbjct: 77  AWLIERLQRPTLVMAPNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYI 136

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
           EK+SSIN+ ++R+RHSAT SLL R D +VV+SVSCIYG+G+ +SY    V+L++G  V +
Sbjct: 137 EKDSSINDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVELRVGTEVPR 196

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
             LL  LV  QY R D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +P
Sbjct: 197 DALLRLLVDVQYTRNDLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHP 255

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           LTG  IR V++++I+  +HYV     +  A+  I++EL  RL ELE +G+LLEAQRL  R
Sbjct: 256 LTGDVIRQVDSLRIFPATHYVAGPERMAHAISTIEQELAERLAELEGQGKLLEAQRLRMR 315

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
             YD+EM+   G C  IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI G
Sbjct: 316 TNYDIEMMRQVGFCSGIENYSRHIDGRGPGSPPATLLDYFPEDFLLVIDESHVTVPQIGG 375

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MY GD  RK  L EYGFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  V
Sbjct: 376 MYEGDMSRKRNLVEYGFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFV 435

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           EQ+IRPTGLVDP V ++  + Q++D+  EI    +   R+L+T LTK+MAEDLT+YL E 
Sbjct: 436 EQVIRPTGLVDPKVVVKPTKGQIDDLIGEIRKRTEADERVLVTTLTKKMAEDLTDYLLEM 495

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            IRVRY+HSEV TL R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFL
Sbjct: 496 GIRVRYLHSEVDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFL 555

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS  SLIQTIGRAARNV+ +V +YADTIT+S++ AIDET RRR KQ+ +N+ H I+PQ +
Sbjct: 556 RSARSLIQTIGRAARNVSGEVHMYADTITESMKEAIDETERRRAKQIAYNEAHGIDPQPL 615

Query: 726 KEKIMEVIDPILLEDAATTNISIDA--------------------------QQLSLSKKK 759
           ++KI +++D +  E   T  + I +                             ++ + +
Sbjct: 616 RKKIADILDQVYREADDTETVEIGSGRSMSRGRRAQGEPGRAVSAGIVEGRDTTNMPRAE 675

Query: 760 GKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
               +K L  QM  AA +L FE AAR RDEI  LK     +G+D +
Sbjct: 676 LADLIKDLTAQMMAAARDLQFELAARFRDEIADLKKE--LRGMDAA 719


>gi|41407433|ref|NP_960269.1| excinuclease ABC subunit B [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|254775593|ref|ZP_05217109.1| excinuclease ABC subunit B [Mycobacterium avium subsp. avium ATCC
           25291]
 gi|41395785|gb|AAS03652.1| UvrB [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 722

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/706 (51%), Positives = 481/706 (68%), Gaps = 29/706 (4%)

Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185
               ++    +    F++ + + P+GDQPAAI +L + I + E+  +LLG TG+GK+ T 
Sbjct: 17  PAEEAVEGLVRAGGRFEVVSPHAPAGDQPAAIDELERRIRAGERDVVLLGATGTGKSATT 76

Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           A +IE +QRP +VMAPNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYI
Sbjct: 77  AWLIERLQRPTLVMAPNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYI 136

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
           EK+SSIN+ ++R+RHSAT SLL R D +VV+SVSCIYG+G+ +SY    V+L++G  V +
Sbjct: 137 EKDSSINDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVELRVGTEVPR 196

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
             LL  LV  QY R D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +P
Sbjct: 197 DALLRLLVDVQYTRNDLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHP 255

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           LTG  IR V++++I+  +HYV     +  A+  I++EL  RL ELE +G+LLEAQRL  R
Sbjct: 256 LTGDVIRQVDSLRIFPATHYVAGPERMAHAISTIEQELAERLAELEGQGKLLEAQRLRMR 315

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
             YD+EM+   G C  IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI G
Sbjct: 316 TNYDIEMMRQVGFCSGIENYSRHIDGRGPGSPPATLLDYFPEDFLLVIDESHVTVPQIGG 375

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MY GD  RK  L EYGFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  V
Sbjct: 376 MYEGDMSRKRNLVEYGFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFV 435

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           EQ+IRPTGLVDP V ++  + Q++D+  EI    +   R+L+T LTK+MAEDLT+YL E 
Sbjct: 436 EQVIRPTGLVDPKVVVKPTKGQIDDLIGEIRKRTEADERVLVTTLTKKMAEDLTDYLLEM 495

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            IRVRY+HSEV TL R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFL
Sbjct: 496 GIRVRYLHSEVDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFL 555

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS  SLIQTIGRAARNV+ +V +YADTIT+S++ AIDET RRR KQ+ +N+ H I+PQ +
Sbjct: 556 RSARSLIQTIGRAARNVSGEVHMYADTITESMKEAIDETERRRAKQIAYNEAHGIDPQPL 615

Query: 726 KEKIMEVIDPILLEDAATTNISIDA--------------------------QQLSLSKKK 759
           ++KI +++D +  E   T  + I +                             ++ + +
Sbjct: 616 RKKIADILDQVYREADDTDTVEIGSGRSMSRGRRAQGEPGRAVSAGIVEGRDTTNMPRAE 675

Query: 760 GKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
               +K L  QM  AA +L FE AAR RDEI  LK     +G+D +
Sbjct: 676 LADLIKDLTAQMMAAARDLQFELAARFRDEIADLKKE--LRGMDAA 719


>gi|331090556|ref|ZP_08339408.1| UvrABC system protein B [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330403120|gb|EGG82682.1| UvrABC system protein B [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 668

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/660 (53%), Positives = 478/660 (72%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI QL+KG     + Q LLGVTGSGKTFTMA VI+ + RP +
Sbjct: 7   MDHFELISEYAPTGDQPQAIEQLVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLNRPTL 66

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID+
Sbjct: 67  IIAHNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDK 126

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E+++ L++ QY
Sbjct: 127 LRHSATAALSERRDVIIVASVSCIYGLGSPIDYQEMVISLRPGMIKDRDEVVAKLIEIQY 186

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI   RGTFRV GD +EIFP+  E+ A RV  FG+++E I+E   LTG+    +  +
Sbjct: 187 DRNDIDFKRGTFRVRGDVLEIFPAISEEYAIRVEFFGDEVERITEIDVLTGEIKNVLNHV 246

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV  +  +  A K I+EEL+ R+   + E +LLEAQR+ +R  +D+EM++ TG
Sbjct: 247 AIFPASHYVVSKENMEKATKAIEEELEERIRYFKGEDKLLEAQRISERTNFDIEMMKETG 306

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTG   G+PP TL +Y P+D L+ +DESH TIPQI+GMY GD  RK+TL
Sbjct: 307 FCSGIENYSRHLTGLKEGQPPHTLIDYFPDDFLIMIDESHKTIPQIAGMYAGDQSRKSTL 366

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL FEE+       + VSATPG +E E+ + +  +QIIRPTGL+DP
Sbjct: 367 VDYGFRLPSAKDNRPLNFEEFESKINQILFVSATPGEYE-EKNELLRADQIIRPTGLLDP 425

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++D+  E+N    +  ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ 
Sbjct: 426 EVEVRGVEGQIDDLVGEVNKEIAKKNKVLVTTLTKRMAEDLTDYMRELGIRVKYLHSDID 485

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 486 TLERTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGR 545

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YADT+T S++ AI ET RRR+ Q+ +N++H I PQ+VK+ + ++I   +
Sbjct: 546 AARNAEGHVIMYADTMTDSMKNAIRETERRRKVQMAYNEEHGITPQTVKKAVRDLI--SI 603

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            +  A+  + ++    S+S+ + +  +K + KQM  AA  LNFE AA++RD++  LK   
Sbjct: 604 SKKVASEELQMEKDPESMSRSELEKLIKDMTKQMKKAAAELNFEMAAQVRDKLVELKKQL 663


>gi|227513658|ref|ZP_03943707.1| excision endonuclease subunit UvrB [Lactobacillus buchneri ATCC
           11577]
 gi|227083174|gb|EEI18486.1| excision endonuclease subunit UvrB [Lactobacillus buchneri ATCC
           11577]
          Length = 667

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/663 (51%), Positives = 472/663 (71%), Gaps = 2/663 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           ++   F + + Y P+GDQP AI +L+ G+   +K Q+LLG TG+GKTFT++ VI  + +P
Sbjct: 5   ENNHKFDLVSSYQPTGDQPQAIKKLVNGVDDGKKAQILLGATGTGKTFTISNVIAQVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V++ NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++I
Sbjct: 65  TLVLSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVS I+G+G    Y   +V L++G ++E+  LL  LV  
Sbjct: 125 DQLRHSATSSLLERNDVIVVASVSSIFGLGDPTEYRNHVVSLRVGQNIERDHLLRQLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ I E   LTG+ I + E
Sbjct: 185 QYDRNDIDFQRGRFRVHGDVVEVFPASWDEHAFRIEFFGDEIDRIREVDTLTGEVIGDRE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I I+  +H++T    +  A+  I++E+  ++ + EKEG+LLEAQRL+QR TYD+EM+  
Sbjct: 245 HIAIFPATHFLTNDDVMKLALPEIQQEMDSQVSKFEKEGKLLEAQRLKQRTTYDIEMMRE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    IENYSR++  R PG+PP TL ++ P+D LL VDESH T+PQI GMY GD  RK 
Sbjct: 305 MGYTSGIENYSRFMDRRKPGQPPFTLLDFFPDDYLLVVDESHQTMPQIRGMYNGDKDRKE 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS +DNRPLR  E+       I +SATPG +E++Q +  +V+QIIRPTGL+
Sbjct: 365 QLVKYGFRLPSALDNRPLRLPEFEKRVHQVIYMSATPGPYEMDQTKD-VVQQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +++R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+V+Y+HS+
Sbjct: 424 DPTIDVRPIMGQMDDLVGEINKRVDKHERVFVTTLTKKMAEDLTDYLKDLGIKVKYLHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER +IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLR++ SLIQTI
Sbjct: 484 IKTLERAQIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRA+RN +  VI+YAD++T S++ AIDET RRR  Q+++NK+H I P+++ + + + I  
Sbjct: 544 GRASRNEHGAVIMYADSVTDSMKAAIDETARRRAIQIKYNKEHGITPKTIIKPVRDAISI 603

Query: 736 IL-LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                DA   +  +++    +S K  K  L  L  +M  AA  L+FE+AA +RD I  LK
Sbjct: 604 TKSSSDAGKKDDFVESDFEQMSTKDQKNMLARLTDEMREAAKKLDFEQAATLRDTIMELK 663

Query: 795 SSP 797
           +  
Sbjct: 664 AQI 666


>gi|209695340|ref|YP_002263269.1| excinuclease ABC subunit B [Aliivibrio salmonicida LFI1238]
 gi|226698331|sp|B6EGH8|UVRB_ALISL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|208009292|emb|CAQ79558.1| UvrABS system protein B (excinuclease ABC subunit B) [Aliivibrio
           salmonicida LFI1238]
          Length = 676

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/671 (52%), Positives = 479/671 (71%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + +++ +DY P+GDQP AI  L +G+ +    Q LLGVTGSGKTFT+A VI    RP ++
Sbjct: 3   SAYELVSDYQPAGDQPQAIKTLNEGLENGLAHQTLLGVTGSGKTFTLANVIAKSGRPTVI 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY E K FFP+NAVEYFVSY+DYYQPEAYVP TDT+IEK+SS+NE I++M
Sbjct: 63  MAHNKTLAAQLYGEMKAFFPNNAVEYFVSYFDYYQPEAYVPTTDTFIEKDSSVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+++SVS IYG+G  ++Y  M++ L  GD + Q+++L  L + QYK
Sbjct: 123 RLSATKALLERKDAIIIASVSAIYGLGDPQAYLSMMLHLSRGDIINQRDILRRLAELQYK 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RGTFRV G+ +++FP+  E  A R+ +F +++E IS+F PLTG  I +++   
Sbjct: 183 RNDMAFERGTFRVRGEVLDVFPAESEHEAIRIELFDDEVERISKFDPLTGSIITKDMPRC 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK +L  R  EL    +L+E QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPREKVLDAIEQIKVDLAERKKELLANNKLVEEQRISQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GE PPTLF+Y+P+D LL +DESH+T+ QI  MY+GD  RK  L
Sbjct: 303 FCSGIENYSRYLSGRPQGEAPPTLFDYLPKDGLLIIDESHITVSQIGAMYKGDRSRKENL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+E+    P TI VSATPG +E+E+    I EQ++RPTGL+DP
Sbjct: 363 VEYGFRLPSALDNRPMRFDEFEARAPQTIYVSATPGKYEIEKSGSDIAEQLVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI +  + G R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ 
Sbjct: 423 IIEVRPVGTQVDDLLSEIRIRTKVGERVLVTTLTKRMSEDLTEYLAEHGVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQ IGR
Sbjct: 483 TVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQAIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+  K ILYAD IT S++ AI ET RRREKQ+ HN+   I P ++K+ + ++++   
Sbjct: 543 AARNLEGKAILYADRITGSMEKAIGETERRREKQILHNEALGIVPTALKKNVADILELGD 602

Query: 738 LEDAATTNIS----------IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           +       ++            A   S++ ++ +  ++ L  +M+  A +L FE+AA++R
Sbjct: 603 MTKNKRKIVAPKMKLSEVAEEGASYQSMTPQQLEKEVQRLEAKMYQHARDLEFEQAAKVR 662

Query: 788 DEIKRLKSSPY 798
           DE+++L++   
Sbjct: 663 DEVEKLRNQFI 673


>gi|316984134|gb|EFV63112.1| excinuclease ABC, B subunit [Neisseria meningitidis H44/76]
 gi|325140446|gb|EGC62967.1| excinuclease ABC, B subunit [Neisseria meningitidis CU385]
 gi|325144530|gb|EGC66829.1| excinuclease ABC, B subunit [Neisseria meningitidis M01-240013]
          Length = 716

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/665 (53%), Positives = 481/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 50  SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 109

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 110 MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 169

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ RND I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 170 RLSATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 229

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    
Sbjct: 230 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYT 289

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 290 VFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 349

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 350 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 409

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P TI VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 410 DYGFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 468

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   ++G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 469 IIIRPVATQVDDLMSEINDRIEKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 528

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 529 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 588

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++  I PQ +K+++ ++ID +  
Sbjct: 589 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEQGIVPQQIKKQVKDIIDGVYH 648

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+  +        ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 649 EEDGSKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRDIK 708

Query: 795 SSPYF 799
            +  F
Sbjct: 709 ENLLF 713


>gi|254437198|ref|ZP_05050692.1| excinuclease ABC, B subunit [Octadecabacter antarcticus 307]
 gi|198252644|gb|EDY76958.1| excinuclease ABC, B subunit [Octadecabacter antarcticus 307]
          Length = 735

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/663 (62%), Positives = 525/663 (79%), Gaps = 2/663 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
              +    F ++T++ P+GDQP AI +L +GI + E+ Q+LLG TG+GKTFTMAK+IE  
Sbjct: 26  EKLEGGRAFVLKTEFEPAGDQPTAIKELCEGIRNGERDQVLLGATGTGKTFTMAKMIEET 85

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRPAI++APNK LAAQLY EFK+FFP  AVEYFVS+YDYYQPEAYV R+DT+IEKES IN
Sbjct: 86  QRPAIILAPNKTLAAQLYGEFKSFFPEAAVEYFVSFYDYYQPEAYVARSDTFIEKESQIN 145

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           EQIDRMRHSATRSLLER+D I+V+SVSCIYGIGSVE+Y  M   L  G+   Q+++++ L
Sbjct: 146 EQIDRMRHSATRSLLERDDVIIVASVSCIYGIGSVETYGAMTQDLHTGEEYNQRQIMADL 205

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           + Q YKR D G  RGTFRV GDS+E++P+HL+D AW++S FG ++E I+EF PLTG+K  
Sbjct: 206 IAQAYKRNDAGFQRGTFRVRGDSLEVWPAHLDDRAWKLSFFGEELEAITEFDPLTGEKTD 265

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
             E ++IYANSHYVTP+PT+  A+  IK+EL+MRL +   EG+LLEAQRLEQR  +DLEM
Sbjct: 266 TFEKVRIYANSHYVTPKPTMKQAVVGIKKELRMRLDQFVSEGKLLEAQRLEQRCNFDLEM 325

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           LE TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GDF 
Sbjct: 326 LEATGVCNGIENYSRYLTGRMPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDFR 385

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TLAE+GFRLPSCMDNRPL+FEEW+ +RP ++ VSATP +WE+EQ  G+  EQIIRPT
Sbjct: 386 RKMTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWEMEQTGGVFTEQIIRPT 445

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP +EIR   TQV+DV DEI   + +G R L+T LTKRMAEDLTEYL+E  I+VRYM
Sbjct: 446 GLIDPMIEIRPVETQVDDVMDEIRRVSAKGFRTLVTTLTKRMAEDLTEYLHENGIKVRYM 505

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++ T+ERIEI+RDLRLG FDVL+GINLLREGLDIPECGLVAILDADKEGFLRS+TSLI
Sbjct: 506 HSDIDTIERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLI 565

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN   +VI+YAD IT S++ A+ ET RRR++Q+ +N+KH I P +VK+ + ++
Sbjct: 566 QTIGRAARNAEGRVIMYADRITGSMERAMGETDRRRDRQIAYNEKHGITPTTVKKNVEDI 625

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           +  +   D     ++  A   + +    KA L  LR  M  AA+NL FEEAAR+RDE+KR
Sbjct: 626 LAGLYKGDVDMNRVT--ATIDTPAGPNLKAVLDGLRVDMRKAAENLEFEEAARLRDEVKR 683

Query: 793 LKS 795
           L++
Sbjct: 684 LET 686


>gi|163942851|ref|YP_001647735.1| excinuclease ABC subunit B [Bacillus weihenstephanensis KBAB4]
 gi|163865048|gb|ABY46107.1| excinuclease ABC, B subunit [Bacillus weihenstephanensis KBAB4]
          Length = 658

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/657 (54%), Positives = 476/657 (72%), Gaps = 3/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ ++Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VM
Sbjct: 4   PFEIISEYSPQGDQPGAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSE K+FFP+N+VEYFVSYYDYYQPEAYVP TDT+IEK++ IN++ID++R
Sbjct: 64  AHNKTLAGQLYSELKDFFPNNSVEYFVSYYDYYQPEAYVPHTDTFIEKDAQINDEIDKLR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT SL ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R
Sbjct: 124 HSATSSLFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I
Sbjct: 184 NDIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C
Sbjct: 244 FPASHFVTREEKLKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L +
Sbjct: 304 SGIENYSRHLTLRPAGSTPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVD 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL F+E+       I VSATPG +ELEQ     +EQIIRPTGL+DPP+
Sbjct: 364 HGFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSP-KAIEQIIRPTGLLDPPI 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           +IR    Q++D+  EI+    +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTL
Sbjct: 423 DIRPIEGQIDDLLGEIHDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTL 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 483 ERIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N +VI+YAD IT+S+ +AI+ET RRR  Q  +N+KH I P+++++ + +VI      
Sbjct: 543 RNANGRVIMYADRITRSMGIAIEETQRRRSIQEAYNEKHGITPKTIQKGVRDVIRATTAA 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +   T I        ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 603 E--DTEIYEVTPAKKMTKKERENTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|188534388|ref|YP_001908185.1| excinuclease ABC subunit B [Erwinia tasmaniensis Et1/99]
 gi|238689682|sp|B2VBW9|UVRB_ERWT9 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|188029430|emb|CAO97307.1| UvrABC system protein B (Excinuclease ABC subunit B) [Erwinia
           tasmaniensis Et1/99]
          Length = 674

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/666 (55%), Positives = 475/666 (71%), Gaps = 9/666 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +++ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V
Sbjct: 3   KVFKLNSEFKPAGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLSRGMVIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D A RV +F  ++E +S F PLTGQ    +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSIFDPLTGQIESVIPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILQAMEEIKDELVERKKVLLDNNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+  G +++Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMKFEEFEGLAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R   TQV+D+  EI        R+L+TVLTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 VEVRPVGTQVDDLLSEIRQRVAINERVLVTVLTKRMAEDLTEYLTEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PI 736
           ARN+N K ILY D IT S+  AI ET RRREKQ  HN++H I PQ + +KI ++++    
Sbjct: 543 ARNLNGKAILYGDKITPSMARAIGETERRREKQQLHNEEHGIVPQGLNKKISDILELGQG 602

Query: 737 LLEDAATTN-------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           L ++ A          +  D   + L+ +  +  +  L  QM   A NL FEEAA++RD+
Sbjct: 603 LAKNKAKPRNMKGRSIVEDDPAHVDLTPQGLQKRIHQLEAQMQQHAQNLEFEEAAQVRDQ 662

Query: 790 IKRLKS 795
           + +++ 
Sbjct: 663 LHQVRE 668


>gi|315194377|gb|EFU24769.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 661

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 472/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 126 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ  GMY GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQFRGMYNGDRARKQVLVD 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 366 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHT-DKMVEQIIRPTGLLDPKI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 EVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   + E
Sbjct: 545 RNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATV-E 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +    + +       ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 604 NDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAE 660


>gi|313201077|ref|YP_004039735.1| excinuclease ABC subunit B [Methylovorus sp. MP688]
 gi|312440393|gb|ADQ84499.1| excinuclease ABC, B subunit [Methylovorus sp. MP688]
          Length = 681

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/669 (55%), Positives = 482/669 (72%), Gaps = 4/669 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + +Q+   + P+GDQPAAI +L+ GI    + Q LLGVTGSGKT+TMA VI    RPA+V
Sbjct: 11  SRYQLHQPFPPAGDQPAAIEKLITGIEQGMQYQTLLGVTGSGKTYTMANVIARTGRPAMV 70

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP  D +IEK+SSIN+ I++M
Sbjct: 71  MAPNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINDHIEQM 130

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+SLLER D I+V++VS IYGIG    Y  M++ +  G  + Q+++++ L+  QY 
Sbjct: 131 RLSATKSLLEREDSIIVATVSAIYGIGDPGEYHGMVLHIHQGMKISQRDIVNKLITMQYD 190

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RG FRV GD +++FPS   + A R+S+F ++IE I  F PLTGQ    +   +
Sbjct: 191 RNDFDFSRGAFRVRGDVVDVFPSENSETAVRISLFDDEIETIQLFDPLTGQVFNKIHNFR 250

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+ +SHYVT R     AM+ IK+EL+ R+    K  +L+EAQR+EQR  +DLEML   G 
Sbjct: 251 IFPSSHYVTAREATVRAMETIKQELRDRVDFFIKNNKLVEAQRIEQRTRFDLEMLNEIGF 310

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+LTGR+PG+ PPTL +Y+P ++L+ +DESHVTIPQI GMY+GD  RK  L 
Sbjct: 311 CKGIENYSRHLTGRSPGDAPPTLIDYLPANALMIIDESHVTIPQIGGMYKGDRARKENLV 370

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPLRFEE+  +   T+ VSATP  +E    Q  +VEQ+ RPTGL+DP 
Sbjct: 371 DYGFRLPSALDNRPLRFEEFERIMRQTVFVSATPADYEATH-QEQVVEQVARPTGLIDPE 429

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + ++ A TQV+D+  EI L    G R+L T LTKRMAEDLT+YL E  ++VRY+HS++ T
Sbjct: 430 ITVKPADTQVDDLLSEIKLRVAVGERVLATTLTKRMAEDLTDYLSEHGVKVRYLHSDIDT 489

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQT GRA
Sbjct: 490 VERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTAGRA 549

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N KVI YA+ IT+S++LA+DET RRR KQ+  N+ H I P+ V ++I ++ID +  
Sbjct: 550 ARNLNGKVIFYANNITRSMKLAMDETQRRRIKQMAFNEAHGIVPKGVTKRIKDIIDGVYD 609

Query: 739 EDAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +D A         Q S   LS+K+    +K L K MH +A NL FE+AA  RD++K+LK+
Sbjct: 610 KDDAKRERQAAQDQASYEALSEKQIIKEMKRLEKSMHDSAQNLEFEKAAEFRDQLKKLKA 669

Query: 796 SPYFQGLDD 804
             Y   + D
Sbjct: 670 KFYGTDVPD 678


>gi|297208515|ref|ZP_06924944.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300912607|ref|ZP_07130050.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|296886770|gb|EFH25674.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300886853|gb|EFK82055.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 661

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 473/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKIHSDFEPQGDQPQAIEEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 126 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVD 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 366 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHT-DKMVEQIIRPTGLLDPKI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 EVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   + E
Sbjct: 545 RNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATV-E 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +    + +       ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 604 NDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAE 660


>gi|206577462|ref|YP_002239587.1| excinuclease ABC, B subunit [Klebsiella pneumoniae 342]
 gi|288936430|ref|YP_003440489.1| excinuclease ABC subunit B [Klebsiella variicola At-22]
 gi|290510514|ref|ZP_06549884.1| excinuclease ABC, B subunit [Klebsiella sp. 1_1_55]
 gi|226698336|sp|B5XYX2|UVRB_KLEP3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|206566520|gb|ACI08296.1| excinuclease ABC, B subunit [Klebsiella pneumoniae 342]
 gi|288891139|gb|ADC59457.1| excinuclease ABC, B subunit [Klebsiella variicola At-22]
 gi|289777230|gb|EFD85228.1| excinuclease ABC, B subunit [Klebsiella sp. 1_1_55]
          Length = 673

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/663 (55%), Positives = 470/663 (70%), Gaps = 8/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V+A
Sbjct: 5   FVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I++FP+  +D+A R+ +F  ++E +S F PLTG     V    IY
Sbjct: 185 DQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVESTVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEE+  L P TI VSATPG++EL++  G +V+Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI L      R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           N+N K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K+++++       
Sbjct: 545 NINGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQLGQGLA 604

Query: 735 --PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                    A          + ++ K  +  +  L  QM   A NL FEEAA+IRD++ +
Sbjct: 605 KTKAKGRGKAKAVEPAGLSAVEMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQ 664

Query: 793 LKS 795
           L+ 
Sbjct: 665 LRE 667


>gi|332975216|gb|EGK12116.1| excision endonuclease subunit UvrB [Kingella kingae ATCC 23330]
          Length = 679

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/668 (53%), Positives = 479/668 (71%), Gaps = 8/668 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLDGLADGLSSQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ RND I+V++VS IYGIG    Y QM++ +K GD ++Q++++++LV  QY+
Sbjct: 129 RLSATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDQIDQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD ++++P+   D A R+S+F ++I+ +S F PL+G   + V    
Sbjct: 189 RGDVDFKRGSFRVRGDVVDVYPAESSDYALRISLFDDEIDRLSLFDPLSGSLHQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+ +SHYVTPR T+  A + IKEEL+ R+     E R +E QR+EQR  +DLEML   G 
Sbjct: 249 IFPSSHYVTPRDTVLRACESIKEELRQRIEFYTNENRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P++++LF+DESHVTI QI  MY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPKNAILFIDESHVTIGQIGAMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+    P T+ VSATP ++E E   G IVEQ++RPTGL+DP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFERAMPQTVFVSATPAAYEAEHA-GQIVEQVVRPTGLLDPE 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN+  ++G R+L+T LTKRMAE LT+Y  E  ++VRY+HS++ T
Sbjct: 428 IIIRPVGTQVDDLLSEINIRKEKGERVLVTTLTKRMAEQLTDYYTELGVKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ + +K+ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKSAIDETERRREKQMKFNEEHGIVPQQINKKVKDLIDGVYN 607

Query: 739 EDAA-------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            +          ++    ++    +++     +  L KQM  AA +L FEEAA +RD+I+
Sbjct: 608 AETEVLGSLKTKSSKKKASKTEIRTEQDAIDEITRLEKQMQQAARDLQFEEAAVLRDKIR 667

Query: 792 RLKSSPYF 799
            +K S  F
Sbjct: 668 VIKESLLF 675


>gi|295096529|emb|CBK85619.1| excinuclease ABC, B subunit [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 671

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/662 (55%), Positives = 472/662 (71%), Gaps = 6/662 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMIIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTG     ++   
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDMALRVELFDEEVERLSLFDPLTGHVESVIQRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKTELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGDDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   +    R+L+T LTKRMAEDLTEYL E   +VRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRARSAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV------ 732
           ARNVN K ILY D IT S+  AI ET RRREKQ  +N++H I PQ + +K++++      
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGITPQGLNKKVVDILALGQN 602

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           I     +        ++   ++L+ K  +  +  L  QM   A NL FEEAA+IRD++ +
Sbjct: 603 IAKTKAKGRGKARSVVEEDTVALTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQ 662

Query: 793 LK 794
           L+
Sbjct: 663 LR 664


>gi|260597170|ref|YP_003209741.1| excinuclease ABC subunit B [Cronobacter turicensis z3032]
 gi|260216347|emb|CBA29364.1| UvrABC system protein B [Cronobacter turicensis z3032]
          Length = 673

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/667 (55%), Positives = 475/667 (71%), Gaps = 12/667 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI ++ +G+      Q LLGVTGSGKTFTMA VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRIKEGLEDGLAHQTLLGVTGSGKTFTMANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLTELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTG     ++   
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDELALRVELFDEEVERLSLFDPLTGTVDSIIQRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  AM+ IK EL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 VYPKTHYVTPRERIVQAMEDIKVELAERRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGE PPTLF+Y+P D LL +DESHVTIPQI GM+RGD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMFRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P T+ VSATPG++ELE+    I++Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTVYVSATPGNYELEKSGSEIIDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI        R+L+T LTKRMAEDLTEYL E   +VRY+HS++ T
Sbjct: 423 IEVRPVGTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN K ILY D IT S+  AI+ET RRREKQ  +N++H I PQ + +K+++++   L 
Sbjct: 543 ARNVNGKAILYGDKITPSMARAINETERRREKQQAYNEEHGIVPQGLNKKVVDIL--ALG 600

Query: 739 EDAATTNISIDAQQLSL----------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           E+ A T      +  ++          + K  +  +  L  QM   A NL FEEAA+IRD
Sbjct: 601 ENIAKTKAKGRGKGRTVADAEAAELALTPKALQQKIHQLEAQMVQHAQNLEFEEAAQIRD 660

Query: 789 EIKRLKS 795
           ++ +L+ 
Sbjct: 661 KLHQLRE 667


>gi|52840327|ref|YP_094126.1| excinuclease ABC subunit B [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|81823491|sp|Q5ZZD9|UVRB_LEGPH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|52627438|gb|AAU26179.1| excinuclease ABC subunit B [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 663

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/659 (55%), Positives = 479/659 (72%), Gaps = 1/659 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ ++Y P+GDQP AIA L+ G+ S    Q LLGVTGSGKTFT+A VI+AM+RP ++M
Sbjct: 4   LFKIYSNYQPAGDQPTAIASLIDGLESGLAKQTLLGVTGSGKTFTIAHVIQAMKRPTLIM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR
Sbjct: 64  APNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+V++VS IYG+G  +SY +M++ L  G+  +Q+++L  L + QY R
Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMLLHLSRGEQSDQRKILKRLAEMQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++ + RG FRV GD I+IFP+  E  A R+ +F ++++ I+ F PLTG+ ++ +  + I
Sbjct: 184 TNLSLERGQFRVHGDVIDIFPADSEKEAIRIELFDDEVDNIARFDPLTGEILQRLPRVTI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  +HYVTPR  +   ++ +K EL+ RL EL  + +L+EAQRLEQR  +D+EM+   G C
Sbjct: 244 FPKTHYVTPRERILETVEKVKVELQERLAELNAQNKLVEAQRLEQRTCFDIEMMLELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+ R  GE PPTLF+Y+P ++LL +DESHVT+PQI GMYRGD  RK TL  
Sbjct: 304 SGIENYSRYLSNREAGEAPPTLFDYLPPEALLIIDESHVTVPQIGGMYRGDRARKETLVN 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+    P TI +SATPG +E E     + EQ++RPTGL+DP V
Sbjct: 364 YGFRLPSALDNRPLRFEEFEERSPQTIYISATPGPYEQEHSDN-VAEQVVRPTGLIDPEV 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR  +TQV+D+  EI     QG RIL+T LTKRMAEDLTEYL E  I+VRY+HS+V T+
Sbjct: 423 EIRPVKTQVDDLMSEIRQVIAQGSRILVTTLTKRMAEDLTEYLSEHGIKVRYLHSDVDTV 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 483 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  + ILYADTIT S+Q A+ ET RRREKQ   N +H I P+ + + + ++++   + 
Sbjct: 543 RNVKGRAILYADTITGSMQRALTETERRREKQKAFNLEHGITPKGINKSVEDILEGAYIG 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
              T       Q    S ++    + +L KQM+  A N+ FE AA+IRDE   LK    
Sbjct: 603 KRKTVVAEKSPQYTHWSPQELVKQINALEKQMYSHAQNMEFELAAKIRDEYLLLKEQLM 661


>gi|88859835|ref|ZP_01134474.1| ATP-dependent DNA excision repair enzyme UvrAC [Pseudoalteromonas
           tunicata D2]
 gi|88817829|gb|EAR27645.1| ATP-dependent DNA excision repair enzyme UvrAC [Pseudoalteromonas
           tunicata D2]
          Length = 664

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/658 (54%), Positives = 470/658 (71%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+D+ PSGDQP AI QL +G+ +    Q LLG TG+GKTFTMA +I  + RP I+MA
Sbjct: 5   FRLQSDFQPSGDQPTAIKQLCEGLDAGLAHQTLLGATGTGKTFTMANIIHNLNRPTIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP N VEYFVSYYDYYQPEAYV  +DT+IEK++SINE I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPDNCVEYFVSYYDYYQPEAYVVASDTFIEKDASINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  +SY +M++ LK+G+ V+Q+++L  L + QY R 
Sbjct: 125 SATKALLERRDVIIVASVSAIYGLGDPDSYMKMMLLLKVGEKVDQRDMLRRLSELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   R T+RV G+ ++IFP+  E  A RV MF ++IE +S F PLTG   +++    IY
Sbjct: 185 DIDFQRATYRVRGEVVDIFPAESETYAIRVEMFDDEIERLSIFDPLTGAVEKHIVRATIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR T+  A + IK ELK     L K  +L+E QR+ QR  YD+EM+   G C 
Sbjct: 245 PKSHYVTPRETILKATEEIKAELKQHREFLLKHNKLVEEQRVAQRTQYDIEMMVELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSRYL+GR PGEPPPTL +Y+P+DSL+ +DESHVT+ QI  MY+GD  RK  L EY
Sbjct: 305 GVENYSRYLSGRAPGEPPPTLLDYLPDDSLMIIDESHVTVSQIGAMYKGDRSRKENLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS MDNRPL+F+E+  + P TI VSATPG +E+ +  G + EQ+IRPTGL+DP +E
Sbjct: 365 GFRMPSAMDNRPLKFDEFEAIAPQTIYVSATPGEYEITRSCGEVAEQVIRPTGLLDPEIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI    +   R+L+T LTKRM+EDLT+YL +  ++VRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIYKRVELKERVLVTTLTKRMSEDLTDYLADHGVKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RIEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +++ + ILY D ITKS+  AI+ET RRRE Q  +N KH   P ++++K+ +++D      
Sbjct: 545 HLSGRAILYGDKITKSMAAAIEETERRREIQHAYNIKHGKVPMALQKKVTDIMDVGTTVT 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           +       DA    LS  +    +K L  +M   A  L FE+AA++RD+I+ L+ S  
Sbjct: 605 SEQMTAVNDASYAVLSAGQIAEKIKKLESKMMQHARELEFEKAAQVRDQIQHLQHSLI 662


>gi|47567376|ref|ZP_00238089.1| excinuclease ABC, B subunit [Bacillus cereus G9241]
 gi|47568446|ref|ZP_00239146.1| excinuclease ABC, B subunit [Bacillus cereus G9241]
 gi|47569268|ref|ZP_00239953.1| excinuclease ABC, B subunit [Bacillus cereus G9241]
 gi|118480209|ref|YP_897360.1| excinuclease ABC subunit B [Bacillus thuringiensis str. Al Hakam]
 gi|228988390|ref|ZP_04148482.1| UvrABC system protein B [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229158730|ref|ZP_04286788.1| UvrABC system protein B [Bacillus cereus ATCC 4342]
 gi|47554039|gb|EAL12405.1| excinuclease ABC, B subunit [Bacillus cereus G9241]
 gi|47554837|gb|EAL13188.1| excinuclease ABC, B subunit [Bacillus cereus G9241]
 gi|47555997|gb|EAL14335.1| excinuclease ABC, B subunit [Bacillus cereus G9241]
 gi|118419434|gb|ABK87853.1| Excinuclease ABC subunit B [Bacillus thuringiensis str. Al Hakam]
 gi|228624714|gb|EEK81483.1| UvrABC system protein B [Bacillus cereus ATCC 4342]
 gi|228771371|gb|EEM19845.1| UvrABC system protein B [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 658

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +NK+H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRSIQEAYNKEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|253315807|ref|ZP_04839020.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
          Length = 661

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/657 (52%), Positives = 472/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P GDQP AI +++ GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKIHSDFEPQGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 126 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVD 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     ++EQIIRPTGL+DP +
Sbjct: 366 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHT-DKMIEQIIRPTGLLDPKI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 EVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   + E
Sbjct: 545 RNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATV-E 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +    + +       ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 604 NDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAE 660


>gi|289208421|ref|YP_003460487.1| excinuclease ABC subunit B [Thioalkalivibrio sp. K90mix]
 gi|288944052|gb|ADC71751.1| excinuclease ABC, B subunit [Thioalkalivibrio sp. K90mix]
          Length = 677

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/663 (57%), Positives = 493/663 (74%), Gaps = 6/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI  L  GI +    Q+LLGVTGSGKTFT+A V+E +QRP I++A
Sbjct: 9   FKVVSQYQPAGDQPAAIRALTDGIEAGLAHQVLLGVTGSGKTFTIANVVENLQRPTIILA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN+ I++MR 
Sbjct: 69  PNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQMRL 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G    Y  M++ L+ GD ++Q++LL  L + QY R 
Sbjct: 129 SATRALLERRDAIIVASVSAIYGLGDPRKYLSMVLHLQRGDRIDQRDLLRRLAELQYTRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + R T+RV G+ I+I P+  E  A R+ +F ++IE +S F PLTG+++R V  + IY
Sbjct: 189 DTELRRATYRVRGEVIDIHPAESEIEAVRIELFDDEIERLSYFDPLTGEQLRTVPRLTIY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR TL  A+  I++ELK RL  L KE RL+EAQRLEQR  +DLEM+   G C 
Sbjct: 249 PKTHYVTPRETLLGAVDQIRDELKERLDFLRKEDRLVEAQRLEQRTLFDLEMILEIGYCN 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPT F+Y+P+D+LL VDESHV++PQ+ GMY+GD  RK TL EY
Sbjct: 309 GIENYSRYLSGRAPGEPPPTFFDYLPKDALLVVDESHVSVPQVGGMYKGDRSRKETLVEY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L+P TI VSATPG +E E   G IV+Q++RPTGL+DP +E
Sbjct: 369 GFRLPSALDNRPLRFEEFEALQPQTIYVSATPGPYEREHA-GAIVDQVVRPTGLLDPILE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A +QV+D   E+    ++  R+L+T LTKRMAEDLT+YL E  +RVRY+HS++ T+E
Sbjct: 428 VRPAGSQVDDCLSEVRDRVERDERVLITTLTKRMAEDLTDYLSEHGVRVRYLHSDIDTVE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAI DADKEGFLRS  SLIQTIGRAAR
Sbjct: 488 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSDRSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-----P 735
           NVN K ILYAD +T S+Q AIDET RRREKQ+ HN+ H I PQ +++ + ++++     P
Sbjct: 548 NVNGKAILYADKVTGSMQRAIDETERRREKQIAHNEAHGITPQGIRKNVADILEARNATP 607

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                     ++ +A     + ++    ++ L ++M   A +L FEEAARIRD I++LK+
Sbjct: 608 GSGRRRGQKKVAEEAPDYIDAPEQAAKEIEKLEQEMFQKARDLEFEEAARIRDRIEKLKA 667

Query: 796 SPY 798
             +
Sbjct: 668 LAF 670


>gi|70729426|ref|YP_259164.1| excinuclease ABC subunit B [Pseudomonas fluorescens Pf-5]
 gi|90111046|sp|Q4KF19|UVRB_PSEF5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|68343725|gb|AAY91331.1| UvrABC system, B protein [Pseudomonas fluorescens Pf-5]
          Length = 671

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/670 (54%), Positives = 481/670 (71%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI  +++GI +    Q LLGVTGSGKTF++A VI  +QRP +
Sbjct: 1   MSEFQLVTRFQPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+I+P+  +  A R+ +F +++E IS F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESISAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A++ IK EL+ RL  L    +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLLDAIEGIKVELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G  PPTL++Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPAGAAPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G +VEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEGVSPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R A TQV+D+  EI        R+L+T LTKRMAEDLT+YL +  +RVRY+HS++ 
Sbjct: 420 QVEVRPALTQVDDLLSEITKRVAVEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S++ AI ET RRR+KQ+  N  + I P+ V + + ++++   
Sbjct: 540 AARNLNGRAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVVKDVADIMEGAT 599

Query: 738 LEDAATTNISIDAQQLS---------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +  + +      A+             S  +    ++ L ++M+  A +L FE AA++RD
Sbjct: 600 VPGSRSKKRKGMAKAAEENARYENELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQMRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EITKLRERLL 669


>gi|148993848|ref|ZP_01823250.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP9-BS68]
 gi|168489066|ref|ZP_02713265.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP195]
 gi|147927673|gb|EDK78698.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP9-BS68]
 gi|183572586|gb|EDT93114.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP195]
 gi|332073577|gb|EGI84056.1| excinuclease ABC, B subunit [Streptococcus pneumoniae GA17570]
          Length = 662

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/654 (54%), Positives = 474/654 (72%), Gaps = 4/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H+I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMTYNEEHDIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K
Sbjct: 606 AVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVK 659


>gi|30023201|ref|NP_834832.1| excinuclease ABC subunit B [Bacillus cereus ATCC 14579]
 gi|229130411|ref|ZP_04259369.1| UvrABC system protein B [Bacillus cereus BDRD-Cer4]
 gi|81837237|sp|Q815I3|UVRB_BACCR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|29898761|gb|AAP12033.1| Excinuclease ABC subunit B [Bacillus cereus ATCC 14579]
 gi|228653110|gb|EEL08990.1| UvrABC system protein B [Bacillus cereus BDRD-Cer4]
          Length = 658

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/656 (54%), Positives = 480/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   E + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL + G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNENGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVTYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 EIETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|154506003|ref|ZP_02042741.1| hypothetical protein RUMGNA_03545 [Ruminococcus gnavus ATCC 29149]
 gi|153793502|gb|EDN75922.1| hypothetical protein RUMGNA_03545 [Ruminococcus gnavus ATCC 29149]
          Length = 666

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/658 (52%), Positives = 473/658 (71%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F ++  Y P+GDQP AI QL+KG     + Q LLGVTGSGKTFTMA VIE +Q+P +
Sbjct: 6   MDRFILKAPYKPTGDQPQAIEQLVKGFKEGNQCQTLLGVTGSGKTFTMANVIEQLQKPTL 65

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAYVP +DTYI K+S+IN++ID+
Sbjct: 66  VIAHNKTLAAQLYGEFKEMFPDNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSAINDEIDK 125

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT +L ER D I+V+SVSCIYG+GS   Y  M++ L+ G   ++ E+++ L++ QY
Sbjct: 126 LRLSATMALAERRDVIIVASVSCIYGLGSPVDYQNMVISLRPGMIKDRDEVVAKLIEIQY 185

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD +E+ P++  DVA R+  FG++++ I+E   LTG+    ++ +
Sbjct: 186 DRNDMDFHRGTFRVRGDVLEVIPAYESDVAIRIEFFGDEVDRITEVDILTGEIKDELKHV 245

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV  +  +N A+K I+EEL+ R+ E +++ +LLEAQR+ +R  +D+EM++ TG
Sbjct: 246 AIFPASHYVVDKENINRAVKAIEEELEERVKEFKRQDKLLEAQRIAERTNFDIEMMKETG 305

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L G  PG+ P TL +Y P+D ++ +DESH TIPQI GMY GD  RK+TL
Sbjct: 306 FCSGIENYSRHLAGLAPGQAPYTLIDYFPDDFVIMIDESHKTIPQIGGMYSGDQSRKSTL 365

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL FEE+       + VSATPG +E E  + +  EQ+IRPTGL+DP
Sbjct: 366 VDYGFRLPSAKDNRPLNFEEFESKINQVLFVSATPGVYEEEH-ELLRAEQVIRPTGLLDP 424

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++D+  EIN    +  ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS+V 
Sbjct: 425 EVEVRPVEGQIDDLIGEINQEISRKNKVLVTTLTKRMAEDLTDYMREIGIRVKYLHSDVD 484

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 485 TLERTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGR 544

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD +T S++LAIDET RRR+ Q+ +N++H I P+++++ + + I   +
Sbjct: 545 AARNSEGHVIMYADKLTDSMRLAIDETERRRKIQMAYNEEHGITPKTIQKAVRDQI--SI 602

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +  A   + ++    S+S+K+ +  +  + K+M  AA  L+FE AA +RD++  LK 
Sbjct: 603 SKKVAAEELKLEKDPESMSRKELEKLIGEVTKRMKKAAAELDFESAAELRDKLIELKQ 660


>gi|295109576|emb|CBL23529.1| excinuclease ABC, B subunit [Ruminococcus obeum A2-162]
          Length = 662

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/660 (51%), Positives = 461/660 (69%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI +L+KG     + + LLGVTGSGKTFTMA VI  + +P +
Sbjct: 1   MDHFELHSEYKPTGDQPQAIEKLVKGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDTYI K++S N++ID+
Sbjct: 61  VLAHNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSTDTYIAKDASTNDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT +L ER D IVVSSVSCIYG+G+ E +  M++ L+ G   ++ +++  L+  QY
Sbjct: 121 LRLSATAALCERRDVIVVSSVSCIYGLGAPEEFFDMMISLRPGMEKDRDDVIKELIDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RGTFRV GD +EIFP++  D A RV  FG++I+ I+E   LTG+    ++  
Sbjct: 181 NRNEMDFHRGTFRVRGDVLEIFPANYSDHAIRVEFFGDEIDRITEVDVLTGEIRSELKHA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV P+  +  A   I EE+K ++   + E +L+EAQR+ +R  +D+EM++ TG
Sbjct: 241 AIFPASHYVVPQSQIQRAADAILEEMKEQVACFKGEDKLIEAQRIAERTNFDVEMMKETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTG  PG+PP TL +Y  +D LL +DESH T+ Q+ GMY GD  RK TL
Sbjct: 301 FCSGIENYSRHLTGLAPGQPPYTLMDYFKDDFLLIIDESHKTVSQVGGMYAGDQSRKQTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL F+E+       + VSATPG +E +  + +  EQIIRPTGL+DP
Sbjct: 361 VDYGFRLPSAKDNRPLSFDEFENKLDQVMFVSATPGQYEADH-EMLRAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++D+  E+N   ++G +IL+T LTKRMAEDLT+Y+ +  IRVRY+HS++ 
Sbjct: 420 KVEVRPVEGQIDDLIGEVNKEVEKGNKILITTLTKRMAEDLTDYMKDVGIRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TLERAEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSEVSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD +T S++ AI ET RRR  Q  +NK+H I P ++K+ + ++I   +
Sbjct: 540 AARNSEGHVIMYADVMTDSMRKAIQETERRRSIQEAYNKEHGITPTTIKKAVRDLI--TV 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
               A T   +     S+++K+    +  + KQM  AA +LNFE+AA +RD++  LK + 
Sbjct: 598 SRAVAETEDKLKKDPESMTRKELTKLIGQVEKQMRAAAADLNFEQAAELRDKMIELKKNL 657


>gi|269836827|ref|YP_003319055.1| excinuclease ABC, B subunit [Sphaerobacter thermophilus DSM 20745]
 gi|269786090|gb|ACZ38233.1| excinuclease ABC, B subunit [Sphaerobacter thermophilus DSM 20745]
          Length = 664

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/660 (55%), Positives = 488/660 (73%), Gaps = 5/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  FQ+ TD  P+GDQP AIAQL++G+      Q LLGVTGSGKTFTMA VI+A+QRP +
Sbjct: 1   MPEFQLVTDLRPTGDQPKAIAQLVEGLQRGYDQQTLLGVTGSGKTFTMANVIQAVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK++ IN++ID+
Sbjct: 61  VLAPNKTLAAQLYSEFKEFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKDADINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+ATR+LL R D I+V+SVSCIYGIGS E Y + IV L+ G +V + ++L  LV+ QY
Sbjct: 121 LRHAATRALLTRRDVIIVASVSCIYGIGSPEEYGKTIVSLRRGATVRRDKVLRHLVELQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+ ++RGTFRV GD+++IFP++ E++A R+  +G++IE I +  PLTG+ +     I
Sbjct: 181 ERNDLTLMRGTFRVRGDTLDIFPAY-EEIAVRIEFWGDEIERIVDIDPLTGEILAERNEI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VT +  L  A+K I+EEL+  L  LE EG++LEA RL+QR  YDLEML+  G
Sbjct: 240 DIYPAKHFVTSQEKLQRAIKSIQEELEEWLKHLEAEGKILEAARLKQRTLYDLEMLQEAG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L+GR  GEPP TL +Y P+D L+F+DESH++IPQ+ GMY GD  RK  L
Sbjct: 300 YCSGIENYSRHLSGRKEGEPPWTLLDYFPDDYLMFIDESHMSIPQVRGMYGGDRSRKDIL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL F+E+       I VSATPG +EL+  +  +VEQ+IRPTGL+DP
Sbjct: 360 VEFGFRLPSARDNRPLTFDEFMQHINQVIYVSATPGEFELQNSKQ-VVEQVIRPTGLLDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R  + Q++D+ DEI+    +G R L+T LTK+MAEDL +YL E  IR  Y+HSE+ 
Sbjct: 419 EISVRPTKGQIDDLIDEIHRRVARGERALVTTLTKKMAEDLADYLKEIGIRTHYLHSEID 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS++SLIQTIGR
Sbjct: 479 TLERIEILRDLRLGVYDVVVGINLLREGLDLPEVSLVAILDADKEGYLRSESSLIQTIGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V+ KVI+YADTIT+S++ AI+ET RRR  Q+ +N++H I P+ + +++ ++ D + 
Sbjct: 539 AARHVDGKVIMYADTITRSMEAAINETYRRRAIQIAYNEEHGIEPRGIVKEVRDLTDRVR 598

Query: 738 LEDAATTNISIDAQQ---LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 +    +++      L   +    +K L +QM  AA  L FE+AA +RD+I  L+
Sbjct: 599 AVAEEASPYRAESKAGAIAELPPDELVRMIKDLERQMKEAAKMLEFEKAALLRDQIIELR 658


>gi|242239861|ref|YP_002988042.1| excinuclease ABC subunit B [Dickeya dadantii Ech703]
 gi|242131918|gb|ACS86220.1| excinuclease ABC, B subunit [Dickeya dadantii Ech703]
          Length = 670

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/665 (55%), Positives = 477/665 (71%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RPA++
Sbjct: 3   KVFKLHSAFQPAGDQPEAIRRLEEGLGDGLAHQTLLGVTGSGKTFTIANVIADLNRPAMI 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKSFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTGQ I+ V    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGQLIQTVPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR T+DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILQAMEDIKVELAERRQVLLANNKLLEEQRLAQRTTFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR  GEPPPTLF+Y+P D LL +DESHVTIPQ+ GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRQSGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP+RFEE+  L P TI VSATPG++ELE+  G +++Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGNYELEKSGGDVIDQVVRPTGLLDPE 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   +    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 LEVRPVTTQVDDLLSEIRKRSVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN+N K ILYAD IT S++ A++ET RRREKQ  +N+KH I PQ + +K+ +++     
Sbjct: 543 ARNLNGKAILYADRITPSMERAMNETQRRREKQQAYNEKHGIVPQGLNKKVTDILQIGQP 602

Query: 735 -PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                +  +       A    LS K  +  ++ L  QM   A NL FEEAAR+RDE+  L
Sbjct: 603 TGQKGKGRSKKAAEPAAGYAQLSPKALEQKMRELENQMLAHAQNLEFEEAARLRDELHAL 662

Query: 794 KSSPY 798
           K    
Sbjct: 663 KERFI 667


>gi|49481649|ref|YP_039154.1| excinuclease ABC subunit B [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|81828140|sp|Q6HBC2|UVRB_BACHK RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|49333205|gb|AAT63851.1| UvrABC system protein B (excinuclease ABC, subunit B) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 658

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|298368934|ref|ZP_06980252.1| excinuclease ABC subunit B [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282937|gb|EFI24424.1| excinuclease ABC subunit B [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 675

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/665 (53%), Positives = 479/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+           ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDGGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIK 667

Query: 795 SSPYF 799
               F
Sbjct: 668 EGLLF 672


>gi|190567660|ref|ZP_03020572.1| excinuclease ABC, B subunit [Bacillus anthracis Tsiankovskii-I]
 gi|190561076|gb|EDV15049.1| excinuclease ABC, B subunit [Bacillus anthracis Tsiankovskii-I]
          Length = 658

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDIIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|325266917|ref|ZP_08133588.1| excision endonuclease subunit UvrB [Kingella denitrificans ATCC
           33394]
 gi|324981658|gb|EGC17299.1| excision endonuclease subunit UvrB [Kingella denitrificans ATCC
           33394]
          Length = 712

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/677 (52%), Positives = 483/677 (71%), Gaps = 5/677 (0%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
           +  ++       + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA
Sbjct: 34  QPATMQIIQYPNSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMA 93

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            VI    RPAI+MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IE
Sbjct: 94  NVIAQSGRPAIIMAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIE 153

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+S+INE I++MR SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ+
Sbjct: 154 KDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQR 213

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +++++LV  QY+R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL
Sbjct: 214 DIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPL 273

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           +G   + V    ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR 
Sbjct: 274 SGSLHQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRT 333

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
            +DLEML   G C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GM
Sbjct: 334 RFDLEMLYEMGFCKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGM 393

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           Y+GD  RK  L +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VE
Sbjct: 394 YKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVE 452

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q++RPTGLVDP + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  
Sbjct: 453 QVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELG 512

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           I+VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR
Sbjct: 513 IKVRYLHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLR 572

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S  SLIQTIGRAARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K
Sbjct: 573 SHRSLIQTIGRAARNVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIK 632

Query: 727 EKIMEVIDPILLEDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEE 782
           +++ ++ID +  E+ +         ++ +    +++     +  L K M  AA +L FEE
Sbjct: 633 KQVKDIIDGVYHEEDSGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEE 692

Query: 783 AARIRDEIKRLKSSPYF 799
           AA +RD I+ +K    F
Sbjct: 693 AAVLRDRIRGIKEGLLF 709


>gi|257875563|ref|ZP_05655216.1| excinuclease ABC [Enterococcus casseliflavus EC20]
 gi|257809729|gb|EEV38549.1| excinuclease ABC [Enterococcus casseliflavus EC20]
          Length = 665

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/656 (52%), Positives = 468/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AI QL+ G+   +K Q+LLG TG+GKT+T++ +I+ + +P +++A
Sbjct: 12  FDLVSKYQPAGDQPEAIHQLVDGVVGGKKAQILLGATGTGKTYTISNLIKEVNKPTLIIA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 72  HNKTLAGQLYGEFKDFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCI+G+GS   Y++ +V L++G    + +LL  L++ Q++R 
Sbjct: 132 SATSSLLERNDVIVVASVSCIFGLGSPIEYARQVVSLRVGMEKSRDQLLKELIEIQFERN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A R+  FG++I+ I E   LTG+ + + E + I+
Sbjct: 192 DIDFQRGRFRVRGDVVEIFPASRDERALRIEFFGDEIDRIREVDALTGEIMSDTEHVSIF 251

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL  RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 252 PATHFVTNEDHMEHAIASIQSELDERLKVLRAENKLLEAQRLEQRTNYDIEMMREMGYTS 311

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ +DESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 312 GIENYSRHMDGRKEGEPPYTLLDFFPDDFLIVIDESHVTMPQVRGMYNGDRARKQMLVDY 371

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E +Q    +++QIIRPTGL+DP +E
Sbjct: 372 GFRLPSALDNRPLRLEEFEKHVNQIVYVSATPGPYEYDQT-DTVIQQIIRPTGLLDPVIE 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+M+EDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 431 VRPIMGQIDDLVGEINERVERNERVFVTTLTKKMSEDLTDYFKELGIKVKYLHSDIKTLE 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 491 RTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD +T S+Q AIDET RRR  Q  +N++H I P+++ ++I ++I    + +
Sbjct: 551 NSEGKVIMYADKMTDSMQRAIDETARRRSIQEAYNEEHGIVPKTIIKEIRDLIAITKVAE 610

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 +       LS+++    L  L K+M  AA  L+FE AA +RD I  LK++
Sbjct: 611 ETGEYTA--TSYEELSREEKATLLLKLEKEMKDAAKALDFETAATLRDTILELKAA 664


>gi|313903598|ref|ZP_07836988.1| Excinuclease ABC subunit B [Thermaerobacter subterraneus DSM 13965]
 gi|313466151|gb|EFR61675.1| Excinuclease ABC subunit B [Thermaerobacter subterraneus DSM 13965]
          Length = 695

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/663 (55%), Positives = 473/663 (71%), Gaps = 2/663 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++  ++ P GDQP AI  + +      +V  LLG TG+GKT TMA VIE +Q P +
Sbjct: 1   MPAFKVVAEFEPRGDQPKAIEAISRAFREGAQVVTLLGATGTGKTATMAWVIEQLQLPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LA QL +EFK FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID+
Sbjct: 61  VIAHNKTLAGQLAAEFKQFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDALINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT SL ER D IVV+SVSCIYG+G+ E Y  +++ L++G+ + ++++L  LV  QY
Sbjct: 121 LRHSATSSLFERKDVIVVASVSCIYGLGAPEDYRDLVLSLRVGNEMPREQILRKLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD IEIFP+ + + A RV +FG++I+ ++E   LTG+ +   + +
Sbjct: 181 ARNDVDFQRGTFRVRGDVIEIFPASMAERAIRVELFGDEIDRLTEIDALTGEVLAYRDHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SHYVT    L  A++ I+ EL+ RL EL    +LLEAQRLEQR  YDLEML   G
Sbjct: 241 AIYPASHYVTHEWKLKRAIESIERELEQRLAELRARDKLLEAQRLEQRTRYDLEMLREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTGR PGEPP TL +Y P   L  +DESHVTIPQ+  MY G+  RK +L
Sbjct: 301 YCSGIENYSRHLTGRAPGEPPYTLLDYFPRPFLCIIDESHVTIPQLRAMYEGEMSRKDSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL+FEE+       + VSATPG +E E    +IVEQI+RPTGL+DP
Sbjct: 361 IEYGFRLPSARDNRPLKFEEFWEKVGQVLFVSATPGPFEREHS-DVIVEQIVRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R  R Q+ED+  EI    ++G R+L+T LTKRMAEDLT+YL E  ++VRY+HSEV 
Sbjct: 420 EIEVRPTRGQIEDLLGEIRQRVERGHRVLVTTLTKRMAEDLTDYLREMGVKVRYLHSEVD 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS T+LIQTIGR
Sbjct: 480 TLERMEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSTTALIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  KVI+YADTIT S++ AI+ET RRR+ Q E+N++H I PQ+V++ + +VI+   
Sbjct: 540 AARNVEGKVIMYADTITDSMRQAIEETYRRRKIQEEYNRRHGITPQTVRKAVRDVIEATH 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             +     ++   +   L + +    +K LRK+M  AA +L FE AA +RD I  L++  
Sbjct: 600 AAERPPEYLA-GKRLSDLPRHQIPEIVKKLRKEMEEAARDLEFERAALLRDMILELEARR 658

Query: 798 YFQ 800
             Q
Sbjct: 659 LGQ 661


>gi|312962074|ref|ZP_07776569.1| excinuclease ABC subunit B [Pseudomonas fluorescens WH6]
 gi|311283626|gb|EFQ62212.1| excinuclease ABC subunit B [Pseudomonas fluorescens WH6]
          Length = 671

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/670 (54%), Positives = 483/670 (72%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI Q+++GI +    Q LLGVTGSGKTF++A VI  + RP +
Sbjct: 1   MSDFQLVTRFEPAGDQPEAIRQMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQINRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ELL  L   QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRELLRRLTSLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+I+P+  +  A R+ +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A++ IK EL  RL  L    +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLMGAIEGIKVELAERLDYLRANNKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTL++Y+P+D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRESGAPPPTLYDYLPDDALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G ++EQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVIEQLVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR A TQV+D+  EIN       R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ 
Sbjct: 420 EIEIRPALTQVDDLLSEINKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S++ AI ET RRR+KQ+  N ++ I P+ V + + ++++   
Sbjct: 540 AARNLNGRAILYADRITGSMERAIGETQRRRDKQIAFNLENGIIPKGVFKDVADIMEGAT 599

Query: 738 LED---------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +           A     S   +    S  +    ++ L ++M+  A +L FE AA+ RD
Sbjct: 600 VPGSRSKKRKGMAKAAEESAKYENELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQTRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EIGKLRERLL 669


>gi|302332467|gb|ADL22660.1| excision endonuclease subunit UvrB [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 661

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 473/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 126 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVD 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 366 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHT-DKMVEQIIRPTGLLDPKI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 EVRPTENQIDDLLSEIQTRVERNDRVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   + E
Sbjct: 545 RNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATV-E 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +    + +       ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 604 NDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAE 660


>gi|229591636|ref|YP_002873755.1| excinuclease ABC subunit B [Pseudomonas fluorescens SBW25]
 gi|229363502|emb|CAY50736.1| excinuclease ABC subunit B [Pseudomonas fluorescens SBW25]
          Length = 671

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/670 (54%), Positives = 481/670 (71%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI Q+++GI +    Q LLGVTGSGKTF++A VI  + RP +
Sbjct: 1   MSDFQLVTRFEPAGDQPEAIRQMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQINRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ELL  L   QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRELLRRLTSLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+I+P+  +  A R+ +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A++ IK EL  RL  L    +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLMGAIEGIKVELAERLEYLRSNNKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTL++Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRESGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G ++EQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVIEQLVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR A TQV+D+  EI        R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ 
Sbjct: 420 EIEIRPALTQVDDLLSEITKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S++ AI ET RRR+KQ+  N ++ I P+ V + + ++++   
Sbjct: 540 AARNLNGRAILYADRITGSMERAIGETQRRRDKQIAFNLENGITPKGVFKDVADIMEGAT 599

Query: 738 LED---------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +           A     S   +    S  +    ++ L ++M+  A +L FE AA+ RD
Sbjct: 600 VPGSRSKKRKGMAKAAEESAKYENELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQTRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EIGKLRERLL 669


>gi|218234341|ref|YP_002369942.1| excinuclease ABC subunit B [Bacillus cereus B4264]
 gi|218162298|gb|ACK62290.1| excinuclease ABC, B subunit [Bacillus cereus B4264]
          Length = 658

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|77164648|ref|YP_343173.1| excinuclease ABC subunit B [Nitrosococcus oceani ATCC 19707]
 gi|254434586|ref|ZP_05048094.1| excinuclease ABC, B subunit [Nitrosococcus oceani AFC27]
 gi|90111042|sp|Q3JC03|UVRB_NITOC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|76882962|gb|ABA57643.1| Excinuclease ABC subunit B [Nitrosococcus oceani ATCC 19707]
 gi|207090919|gb|EDZ68190.1| excinuclease ABC, B subunit [Nitrosococcus oceani AFC27]
          Length = 687

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/672 (56%), Positives = 490/672 (72%), Gaps = 8/672 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ+ +DY P+GDQP AI +L +G+ + E  Q LLGVTGSGKTFT+A +I+ +QRP IV+
Sbjct: 4   IFQLVSDYQPAGDQPEAIERLTEGLAAGEMYQTLLGVTGSGKTFTIANMIQQVQRPTIVL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLYSE + FFP NAV YFVSYYDYYQPEAYVP +DTYI K++S+N+ I++MR
Sbjct: 64  APNKTLAAQLYSEMREFFPRNAVGYFVSYYDYYQPEAYVPASDTYIGKDASVNDHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++ LER D IVV+SVS IYG+G  +SY  M++ L +GD+V+ + +L  L + QY+R
Sbjct: 124 LSATKAFLERPDAIVVASVSAIYGLGDKDSYLNMVLHLMVGDTVDHRGILRRLAELQYQR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D  + RGT+RV G+ I+I+P+  E  A RV +F ++IE +S F PLTG+ +  V  + I
Sbjct: 184 NDRELYRGTYRVRGEIIDIYPAESEQEAIRVELFDDEIESLSYFDPLTGEILHRVSRLTI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  L  A+  IK EL  RL +L    +L+EAQRLEQR  +D+EM+   G C
Sbjct: 244 YPKTHYVTPREVLLQAVDEIKIELAERLEQLYGANKLVEAQRLEQRTRFDIEMILELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+ R PGE PPTLF+Y+P+++LL +DESHVT+PQ+  MYRGD  RK TL E
Sbjct: 304 TGIENYSRFLSRRQPGEAPPTLFDYLPKNALLVIDESHVTVPQLGAMYRGDRARKETLVE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+FEEW  L P TI VSATPG +E +   G ++EQ++RPTGLVDP V
Sbjct: 364 YGFRLPSALDNRPLKFEEWEQLAPQTIFVSATPGPYEQQHS-GAVIEQVVRPTGLVDPAV 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R A +QV+D+  EI        R+L+TVLTKRMAEDLT+YL +  +RVRY+HS++ T+
Sbjct: 423 EVRPAGSQVDDLLSEIRQRTAADERVLVTVLTKRMAEDLTQYLEQHEVRVRYLHSDIDTV 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 483 ERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++ + ILY D +T S+  AI ET RRR+KQL  N+ H I P+ +++ + E+ID +   
Sbjct: 543 RNLHGRAILYGDKVTGSMGRAIAETERRRKKQLAFNETHRIIPRGIQKAVREIIDGVYTP 602

Query: 740 DAATTNISID------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
            +   + S D      A+   L  ++    L+ L +QMH  A NL FE+AAR+RDEIKR+
Sbjct: 603 GSGKGHRSPDRVEEKAAEYTRLPPQQLAKRLQQLERQMHKHAQNLEFEQAARLRDEIKRI 662

Query: 794 KSSPYFQGLDDS 805
           K    F G D +
Sbjct: 663 K-GWVFNGADSA 673


>gi|325570016|ref|ZP_08145941.1| excision endonuclease subunit UvrB [Enterococcus casseliflavus ATCC
           12755]
 gi|325156844|gb|EGC69015.1| excision endonuclease subunit UvrB [Enterococcus casseliflavus ATCC
           12755]
          Length = 665

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/656 (52%), Positives = 468/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AI QL+ G+   +K Q+LLG TG+GKT+T++ +I+ + +P +++A
Sbjct: 12  FDLVSKYQPAGDQPEAIHQLVDGVVGGKKAQILLGATGTGKTYTISNLIKEVNKPTLIIA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 72  HNKTLAGQLYGEFKDFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCI+G+GS   Y++ +V L++G    + +LL  L++ Q++R 
Sbjct: 132 SATSSLLERNDVIVVASVSCIFGLGSPIEYARQVVSLRVGMEKSRDQLLKELIEIQFERN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A R+  FG++I+ I E   LTG+ + + E + I+
Sbjct: 192 DIDFQRGRFRVRGDVVEIFPASRDERALRIEFFGDEIDRIREVDALTGEIMSDTEHVSIF 251

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL  RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 252 PATHFVTNEDHMEHAIASIQSELDERLKVLRAENKLLEAQRLEQRTNYDIEMMREMGYTS 311

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D LL +DESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 312 GIENYSRHMDGRKEGEPPYTLLDFFPDDFLLVIDESHVTMPQVRGMYNGDRARKQMLVDY 371

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E +Q    +V+QIIRPTGL+DP +E
Sbjct: 372 GFRLPSALDNRPLRLEEFEKHVNQIVYVSATPGPYEYDQT-DTVVQQIIRPTGLLDPVIE 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+M+EDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 431 VRPIMGQIDDLVGEINERVERNERVFVTTLTKKMSEDLTDYFKELGIKVKYLHSDIKTLE 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 491 RTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD +T S+Q AIDET RRR  Q  +N++H I P+++ ++I ++I    + +
Sbjct: 551 NSEGKVIMYADKMTDSMQRAIDETARRRSIQEAYNEEHGIVPKTIIKEIRDLIAITKVAE 610

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 +       LS+++    L  L K+M  AA  L+FE AA +RD I  LK++
Sbjct: 611 ETGEYTT--TSYEELSREEKATLLLKLEKEMKDAAKALDFETAATLRDTILELKAA 664


>gi|301794321|emb|CBW36746.1| UvrABC system protein B (UvrB protein) [Streptococcus pneumoniae
           INV104]
          Length = 662

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/654 (54%), Positives = 474/654 (72%), Gaps = 4/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVLGEVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G   
Sbjct: 250 PATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  Y
Sbjct: 310 GVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ +  ++EQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTE-TVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLE
Sbjct: 429 VRPTMGQIDDLLGEINARIEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S+Q AIDET RRR+ Q+ +N++H+I PQ++K++I ++I    +  
Sbjct: 549 NSEGHVIMYADTVTQSMQRAIDETARRRKIQMTYNEEHDIVPQTIKKEIRDLI---AVTK 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           A       +    SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K
Sbjct: 606 AVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVK 659


>gi|22126903|ref|NP_670326.1| excinuclease ABC subunit B [Yersinia pestis KIM 10]
 gi|45440838|ref|NP_992377.1| excinuclease ABC subunit B [Yersinia pestis biovar Microtus str.
           91001]
 gi|108813005|ref|YP_648772.1| excinuclease ABC subunit B [Yersinia pestis Nepal516]
 gi|145599810|ref|YP_001163886.1| excinuclease ABC subunit B [Yersinia pestis Pestoides F]
 gi|149366848|ref|ZP_01888882.1| excinuclease ABC subunit B [Yersinia pestis CA88-4125]
 gi|162419328|ref|YP_001605949.1| excinuclease ABC subunit B [Yersinia pestis Angola]
 gi|165924747|ref|ZP_02220579.1| UvrABC system, B protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938367|ref|ZP_02226925.1| UvrABC system, B protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011595|ref|ZP_02232493.1| UvrABC system, B protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211368|ref|ZP_02237403.1| UvrABC system, B protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167419919|ref|ZP_02311672.1| UvrABC system, B protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423960|ref|ZP_02315713.1| UvrABC system, B protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167469629|ref|ZP_02334333.1| UvrABC system, B protein [Yersinia pestis FV-1]
 gi|218928320|ref|YP_002346195.1| excinuclease ABC subunit B [Yersinia pestis CO92]
 gi|229841095|ref|ZP_04461254.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843199|ref|ZP_04463345.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229894033|ref|ZP_04509219.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Yersinia pestis Pestoides A]
 gi|229903443|ref|ZP_04518556.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Yersinia pestis Nepal516]
 gi|270487220|ref|ZP_06204294.1| excinuclease ABC, B subunit [Yersinia pestis KIM D27]
 gi|294503158|ref|YP_003567220.1| excinuclease ABC subunit B [Yersinia pestis Z176003]
 gi|20532284|sp|Q8ZGW7|UVRB_YERPE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|123246289|sp|Q1CFQ8|UVRB_YERPN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189038012|sp|A4TNQ1|UVRB_YERPP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238687290|sp|A9R3D3|UVRB_YERPG RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|21959940|gb|AAM86577.1|AE013904_1 excision nuclease subunit B [Yersinia pestis KIM 10]
 gi|45435696|gb|AAS61254.1| excinuclease ABC subunit B [Yersinia pestis biovar Microtus str.
           91001]
 gi|108776653|gb|ABG19172.1| Excinuclease ABC subunit B [Yersinia pestis Nepal516]
 gi|115346931|emb|CAL19820.1| excinuclease ABC subunit B [Yersinia pestis CO92]
 gi|145211506|gb|ABP40913.1| Excinuclease ABC subunit B [Yersinia pestis Pestoides F]
 gi|149291222|gb|EDM41297.1| excinuclease ABC subunit B [Yersinia pestis CA88-4125]
 gi|162352143|gb|ABX86091.1| UvrABC system, B protein [Yersinia pestis Angola]
 gi|165913745|gb|EDR32364.1| UvrABC system, B protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923807|gb|EDR40939.1| UvrABC system, B protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989543|gb|EDR41844.1| UvrABC system, B protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207139|gb|EDR51619.1| UvrABC system, B protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962660|gb|EDR58681.1| UvrABC system, B protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167056809|gb|EDR66572.1| UvrABC system, B protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679213|gb|EEO75316.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Yersinia pestis Nepal516]
 gi|229689546|gb|EEO81607.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229697461|gb|EEO87508.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229703918|gb|EEO90931.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Yersinia pestis Pestoides A]
 gi|262361195|gb|ACY57916.1| excinuclease ABC subunit B [Yersinia pestis D106004]
 gi|262365248|gb|ACY61805.1| excinuclease ABC subunit B [Yersinia pestis D182038]
 gi|270335724|gb|EFA46501.1| excinuclease ABC, B subunit [Yersinia pestis KIM D27]
 gi|294353617|gb|ADE63958.1| excinuclease ABC subunit B [Yersinia pestis Z176003]
 gi|320014295|gb|ADV97866.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 671

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/664 (54%), Positives = 471/664 (70%), Gaps = 6/664 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +++A
Sbjct: 5   FKLHSVFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ    V    +Y
Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+  G I+EQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A    R+L+T LTKRMAEDLT+YL E   +VRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTDYLSEHGAKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           N+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +KI +++       
Sbjct: 545 NLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERRIIPQGLNKKIGDILQLGQPSM 604

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               +   +  ++   Q  SLS K     ++ L  +M+  A NL FE+AA +RD++ +L+
Sbjct: 605 RGKGKGRGSHKMADTTQYQSLSPKALDQKIRELEAKMYTYAQNLEFEQAAELRDQVHQLR 664

Query: 795 SSPY 798
               
Sbjct: 665 QQFI 668


>gi|253998973|ref|YP_003051036.1| excinuclease ABC subunit B [Methylovorus sp. SIP3-4]
 gi|253985652|gb|ACT50509.1| excinuclease ABC, B subunit [Methylovorus sp. SIP3-4]
          Length = 678

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/669 (55%), Positives = 482/669 (72%), Gaps = 4/669 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + +Q+   + P+GDQPAAI +++ GI    + Q LLGVTGSGKT+TMA VI    RPA+V
Sbjct: 8   SRYQLHQPFPPAGDQPAAIEKIITGIEQGMQYQTLLGVTGSGKTYTMANVIARTGRPAMV 67

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP  D +IEK+SSIN+ I++M
Sbjct: 68  MAPNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINDHIEQM 127

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+SLLER D I+V++VS IYGIG    Y  M++ +  G  + Q+++++ L+  QY 
Sbjct: 128 RLSATKSLLEREDSIIVATVSAIYGIGDPGEYHGMVLHIHQGMKISQRDIVNKLITMQYD 187

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RG FRV GD +++FPS   + A R+S+F ++IE I  F PLTGQ    +   +
Sbjct: 188 RNDFDFSRGAFRVRGDVVDVFPSENSETAVRISLFDDEIETIQLFDPLTGQVFNKIHNFR 247

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+ +SHYVT R     AM+ IK+EL+ R+    K  +L+EAQR+EQR  +DLEML   G 
Sbjct: 248 IFPSSHYVTAREATVRAMETIKQELRDRVDFFIKNNKLVEAQRIEQRTRFDLEMLNEIGF 307

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+LTGR+PG+ PPTL +Y+P ++L+ +DESHVTIPQI GMY+GD  RK  L 
Sbjct: 308 CKGIENYSRHLTGRSPGDAPPTLIDYLPANALMIIDESHVTIPQIGGMYKGDRARKENLV 367

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPLRFEE+  +   T+ VSATP  +E    Q  +VEQ+ RPTGL+DP 
Sbjct: 368 DYGFRLPSALDNRPLRFEEFERIMRQTVFVSATPADYEATH-QEQVVEQVARPTGLIDPE 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + ++ A TQV+D+  EI L    G R+L T LTKRMAEDLT+YL E  ++VRY+HS++ T
Sbjct: 427 ITVKPADTQVDDLLSEIKLRVAVGERVLATTLTKRMAEDLTDYLSEHGVKVRYLHSDIDT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQT GRA
Sbjct: 487 VERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTAGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N KVI YA+ IT+S++LA+DET RRR KQ+  N+ H I P+ V ++I ++ID +  
Sbjct: 547 ARNLNGKVIFYANNITRSMKLAMDETQRRRTKQMAFNEAHGIVPKGVTKRIKDIIDGVYD 606

Query: 739 EDAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +D A         Q S   LS+K+    +K L K MH +A NL FE+AA  RD++K+LK+
Sbjct: 607 KDDAKRERQAAQDQASYEALSEKQIIKEMKRLEKSMHDSAQNLEFEKAAEFRDQLKKLKA 666

Query: 796 SPYFQGLDD 804
             Y   + D
Sbjct: 667 KFYGTDVPD 675


>gi|81428136|ref|YP_395135.1| excinuclease ABC subunit B [Lactobacillus sakei subsp. sakei 23K]
 gi|90111040|sp|Q38YA4|UVRB_LACSS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|78609777|emb|CAI54823.1| Excinuclease ABC, subunit B [Lactobacillus sakei subsp. sakei 23K]
          Length = 667

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/660 (53%), Positives = 468/660 (70%), Gaps = 2/660 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F +   Y P+GDQPAAI  L K   +  K Q+L+G TG+GKTFTM+ VI+ + +P ++
Sbjct: 8   NLFDLVAPYEPAGDQPAAIETLTKNFEAGAKAQVLMGATGTGKTFTMSNVIKNLNKPTLI 67

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           ++ NK LA QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++
Sbjct: 68  ISHNKTLAGQLYAEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKL 127

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSAT SLLERND IVV+SVSCI+G+G    Y   ++ L+ G  VE+ +LL  LV  Q++
Sbjct: 128 RHSATSSLLERNDVIVVASVSCIFGLGDPREYQNHVLSLRPGMEVERNDLLRQLVDIQFE 187

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RG FRV GD +EIFP+  +D A RV  FG++I+ I E   LTG+ I     + 
Sbjct: 188 RNDIDFQRGRFRVRGDVVEIFPASRDDHALRVEFFGDEIDRIVEVDALTGEVIGERSHVA 247

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  +H++T    +  A++ IK EL  RL  L+ EG+LLEAQRLEQR  YDLEM++  G 
Sbjct: 248 IFPATHFMTNDEKMEKAIESIKAELAERLAVLKGEGKLLEAQRLEQRTNYDLEMMQEMGY 307

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR++  R  GEPP TL ++ P+DS++ +DESHVT+PQI GMY GD  RK  L 
Sbjct: 308 CSGIENYSRHMEDRQAGEPPYTLLDFFPKDSIMMIDESHVTMPQIRGMYNGDRARKQMLI 367

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL   E+       + VSATPG +E EQ   I V+QIIRPTGL+DP 
Sbjct: 368 DYGFRLPSALDNRPLTLPEFEEHVNEIMYVSATPGPYEAEQT-DIQVDQIIRPTGLLDPN 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    Q++D+  EIN   ++  R+ +T LTK+M+EDLT+YL E  I+VRY+HS++KT
Sbjct: 427 IEVRPIMGQIDDLVGEINDRIEKNERVFITTLTKKMSEDLTDYLKELGIKVRYLHSDIKT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER EIIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 487 LERTEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSERSLIQTIGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL- 737
           +RN + +V+LYAD IT S++ AIDET RRR  Q ++N  HNI P+++ + I + I  +  
Sbjct: 547 SRNEHGQVLLYADKITDSMRHAIDETKRRRTIQEDYNTAHNITPKTIIKPIRDAISMVQS 606

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +E      ++ +    ++SK +    ++ L +QM LAA  L+FE+AA +RD I  LKS  
Sbjct: 607 VEHPEEIKMTNEIDLENMSKAEKLEMVERLSEQMRLAAKKLDFEQAATLRDTILELKSEI 666


>gi|21231919|ref|NP_637836.1| excinuclease ABC subunit B [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767952|ref|YP_242714.1| excinuclease ABC subunit B [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|23822293|sp|Q8P7X1|UVRB_XANCP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|81306071|sp|Q4UW79|UVRB_XANC8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|21113646|gb|AAM41760.1| excinuclease ABC subunit B [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573284|gb|AAY48694.1| excinuclease ABC subunit B [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 673

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/669 (55%), Positives = 487/669 (72%), Gaps = 12/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FELVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L IG+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G I E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEITELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E++   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV   I ++++    ED
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVARPISDIMEG-ARED 603

Query: 741 AATTNISID-----------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           AA                  A   ++   +    LK+L ++M+  A +L FE AA+IRD+
Sbjct: 604 AAEKKAGKGRSKSRQVAEEPADYRAMGPAEIAGKLKALEQKMYQHAKDLEFEAAAQIRDQ 663

Query: 790 IKRLKSSPY 798
           I +LK++  
Sbjct: 664 ILKLKAASL 672


>gi|325917766|ref|ZP_08179951.1| Excinuclease ABC subunit B [Xanthomonas vesicatoria ATCC 35937]
 gi|325536021|gb|EGD07832.1| Excinuclease ABC subunit B [Xanthomonas vesicatoria ATCC 35937]
          Length = 673

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/670 (54%), Positives = 487/670 (72%), Gaps = 12/670 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FELVSPYSPAGDQPAAIEKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L +G+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  D+E+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDVEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G I E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEITELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E++   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV   I ++++    ED
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVARPISDIMEG-ARED 603

Query: 741 AATTNISID-----------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           AA                      ++   +    LKSL ++M+  A +L FE AA+IRD+
Sbjct: 604 AAEKRAGKGRSKSRQVAEETPDYRAMKPAEIAGKLKSLEQKMYQHAKDLEFEAAAQIRDQ 663

Query: 790 IKRLKSSPYF 799
           I++LK++   
Sbjct: 664 IQKLKAASLG 673


>gi|323438709|gb|EGA96450.1| excinuclease ABC subunit B [Staphylococcus aureus O11]
          Length = 661

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/657 (52%), Positives = 472/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L E +D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 126 HSATSALFESDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVD 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 366 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHT-DKMVEQIIRPTGLLDPKI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 EVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   + E
Sbjct: 545 RNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATV-E 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +    + +       ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 604 NDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAE 660


>gi|121594498|ref|YP_986394.1| excinuclease ABC subunit B [Acidovorax sp. JS42]
 gi|120606578|gb|ABM42318.1| excinuclease ABC, B subunit [Acidovorax sp. JS42]
          Length = 698

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/672 (53%), Positives = 484/672 (72%), Gaps = 7/672 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F +   Y P+GDQP AIA+L++G+   E  Q LLGVTGSGKTFTMA VI  + RPAI+
Sbjct: 23  SPFSLYQPYPPAGDQPEAIAKLVEGVQDGEVFQTLLGVTGSGKTFTMANVIARLGRPAII 82

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++M
Sbjct: 83  FAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQM 142

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R S T+SLLER D ++V++VS IYGIG  ESY +MI+ L++GD + Q++ ++ L++ QY+
Sbjct: 143 RLSCTKSLLERRDVVIVATVSAIYGIGEPESYHRMIMTLRVGDQLSQRDAIAQLIRMQYQ 202

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +    RG FRV GD+I++FP+   ++A R+ +F +++E +  F PLTG+  + +    
Sbjct: 203 RNEQDFSRGKFRVRGDTIDVFPAEHSELAVRIELFDDEVESLQLFDPLTGRIQQKIPRFT 262

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +SHYVTPR  +  A++ IK+EL  RL     EG+L+EAQRLEQR  +DLEML   G 
Sbjct: 263 VYPSSHYVTPRDKVLAAVETIKQELDERLKFFVAEGKLVEAQRLEQRTRFDLEMLSEVGH 322

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENY+R+L+G  PGEPP TL +Y+P D+L+F+DESH  I Q++ MY GD  RK TL 
Sbjct: 323 CKGIENYTRHLSGSAPGEPPSTLTDYLPPDALMFLDESHQMIGQLNAMYNGDRARKTTLV 382

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+       + VSATP  +E E   G +V+Q++RPTGLVDP 
Sbjct: 383 EYGFRLPSALDNRPLKFEEFEQRMRQVVFVSATPADYEKEHS-GQVVDQVVRPTGLVDPE 441

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R A  QV+DV  EI +  Q+  R+L+T LTKRMAE LT+YL +  ++VRY+HS++ T
Sbjct: 442 VEVRPATHQVDDVLQEIRICTQKNQRVLITTLTKRMAEQLTDYLSDNGVKVRYLHSDIDT 501

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 502 VERVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA 561

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN++ K ILYAD IT S++ AI+ET RRR KQ+ +N+   I P+S+ +++ ++ID +  
Sbjct: 562 ARNLHGKAILYADRITDSMRKAINETERRRAKQIAYNEARGITPRSIVKQVRDLIDGVYS 621

Query: 739 EDAAT------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           E A         + +  A+   +S+K     +K L K M   A NL FE+AAR+RD++ R
Sbjct: 622 EKAGQEAQRLREDAARQAELEEMSEKDIAREIKRLEKLMLEHARNLEFEQAARVRDQLTR 681

Query: 793 LKSSPYFQGLDD 804
           LK   +     D
Sbjct: 682 LKDRVFGAHGGD 693


>gi|332526729|ref|ZP_08402831.1| excinuclease ABC subunit B [Rubrivivax benzoatilyticus JA2]
 gi|332111132|gb|EGJ11164.1| excinuclease ABC subunit B [Rubrivivax benzoatilyticus JA2]
          Length = 703

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/687 (52%), Positives = 483/687 (70%), Gaps = 4/687 (0%)

Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180
                         +   + FQ+   Y P+GDQP AI QL++G+H     Q LLGVTGSG
Sbjct: 4   ATDVATEPARGEFVTFADSPFQLFQPYPPAGDQPTAINQLVEGVHDGLSYQTLLGVTGSG 63

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           KTFTMA VI  + RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+
Sbjct: 64  KTFTMANVIARLGRPAIVFAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQ 123

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
            D +IEK+S+INE I++MR SAT+S+LER D ++V++VS IYGIG  E Y+QM + +++G
Sbjct: 124 RDLFIEKDSAINEHIEQMRLSATKSILERRDVVIVATVSAIYGIGKPEDYTQMRLIVRVG 183

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           D + Q+++++ LV  QY R +I   RG+FRV GD+I++FP+   ++A R+ +F ++IE +
Sbjct: 184 DKMGQRDVIARLVAMQYTRNEIDFGRGSFRVRGDTIDVFPAEHSELALRIELFDDEIESL 243

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
           +   PLTG+  + V    IY +SHYVTPR  +  A+  IK EL+ R+    K G+L+EAQ
Sbjct: 244 ALLDPLTGRVRQKVPRFVIYPSSHYVTPREQVLRAVDGIKAELRERVDFFVKNGKLVEAQ 303

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
           R+EQR  +D+EML+  G C+ IENY+R+L+G  PGEPP TL +Y+P D+++F+DESHV I
Sbjct: 304 RVEQRTRFDVEMLQEVGHCKGIENYTRHLSGAAPGEPPSTLVDYLPRDAIMFLDESHVLI 363

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
            Q  GMY GD  RK TL EYGFRLPS +DNRPLRFEE+       + V+ATP  +E    
Sbjct: 364 GQFGGMYNGDRARKTTLVEYGFRLPSALDNRPLRFEEFERRMRQAVFVTATPADYEKTHS 423

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
            G +VEQ++RPTGLVDP VE+R A TQV+DV  EI        R+L+T LTKRMAE LT+
Sbjct: 424 -GQVVEQVVRPTGLVDPEVEVRPASTQVDDVLQEIRERVDVNERVLITTLTKRMAEQLTD 482

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           YL +  ++VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLD+PE  LVAILDAD
Sbjct: 483 YLSDNGVKVRYLHSDIDTVERVEILRDLRLGLFDVLVGINLLREGLDLPEVSLVAILDAD 542

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
           KEGFLR++ SLIQTIGRAARN   K ILYAD IT S++ AIDET RRR KQ+ HN+   I
Sbjct: 543 KEGFLRAERSLIQTIGRAARNARGKAILYADKITDSMRRAIDETERRRAKQIAHNEAMGI 602

Query: 721 NPQSVKEKIMEVIDPILLEDAATTNI---SIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
            P++V ++I ++ID ++ +  A   +      A+  ++S+K     +K+L KQM   A N
Sbjct: 603 VPRTVNKRIRDLIDGVVSDKTAKDELQSAQAAAEVEAMSEKDLGKRIKALEKQMLEHARN 662

Query: 778 LNFEEAARIRDEIKRLKSSPYFQGLDD 804
           L FE+AAR+RD++  L+   +     D
Sbjct: 663 LEFEKAARVRDQLALLREQAFGADGHD 689


>gi|323493131|ref|ZP_08098262.1| excinuclease ABC subunit B [Vibrio brasiliensis LMG 20546]
 gi|323312602|gb|EGA65735.1| excinuclease ABC subunit B [Vibrio brasiliensis LMG 20546]
          Length = 676

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/671 (54%), Positives = 483/671 (71%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + +DY PSGDQP AI+QLL G+ S    Q LLGVTGSGKTFT+A VI   QRPAI+
Sbjct: 3   KVFDLVSDYQPSGDQPTAISQLLDGLDSGLAHQTLLGVTGSGKTFTLANVIATAQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  ESY +M++ ++ GD ++Q+++L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPESYLKMMLHIRRGDVMDQRDILRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RG FRV G+ I+IFP+  +  A R+ MF ++I+ IS F PLTG    R++   
Sbjct: 183 RNDVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEIDCISVFDPLTGAVKQRDLARY 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK EL+ R   L    +LLE QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPRERILDAIEEIKVELEGRKKYLLDNNKLLEEQRISQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GRN GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRNEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+F+E+  L P TI VSATPG++ELE+  G + +Q++RPTGL+DP
Sbjct: 363 VEFGFRLPSALDNRPLKFDEFESLAPQTIFVSATPGNYELEKSDGEVADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI L + +  R+L+T LTKRMAEDLTEYL E +++VRY+HS++ 
Sbjct: 423 QLEVRPVATQVDDLLSEIRLRSAKDERVLVTTLTKRMAEDLTEYLTEHDVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ K ILYAD ITKS++ A+ ET RRREKQ ++N+K  I PQ++K  + ++++   
Sbjct: 543 AARNVSGKAILYADRITKSMEKAMGETNRRREKQQQYNEKMGIEPQALKRNVKDIMELGD 602

Query: 738 LEDAATTNISI----------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           +  +     S                 ++ ++    +  L  QM+  A +L FE AA  R
Sbjct: 603 ITKSKKQRTSKAVPLSKVAEPSQSYDVMTPQQLDKEIAKLEAQMYQHAQDLEFELAAEKR 662

Query: 788 DEIKRLKSSPY 798
           D+I +L+    
Sbjct: 663 DQIDQLRKKFI 673


>gi|289667337|ref|ZP_06488412.1| excinuclease ABC subunit B [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 673

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/670 (54%), Positives = 487/670 (72%), Gaps = 12/670 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T++ V++ +Q+P +VMA
Sbjct: 5   FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTISNVVQHVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L +G+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G + E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI+   + G R+L+T LTKRM+E+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEIHERIKLGDRVLVTTLTKRMSENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV+  I ++++    ED
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPISDIMEG-ARED 603

Query: 741 AATTNISID-----------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           A                       ++   +    LKSL ++M+  A +L FE AA+IRD+
Sbjct: 604 AVEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGKLKSLEQKMYQHAKDLEFEAAAQIRDQ 663

Query: 790 IKRLKSSPYF 799
           I++LK++   
Sbjct: 664 IQKLKAASLG 673


>gi|308389449|gb|ADO31769.1| excinuclease ABC subunit B [Neisseria meningitidis alpha710]
          Length = 699

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/665 (53%), Positives = 481/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 33  SPFKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 92

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 93  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 152

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 153 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 212

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 213 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 272

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G 
Sbjct: 273 VFPSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGF 332

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 333 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 392

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 393 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 451

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 452 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 511

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 512 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 571

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 572 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 631

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 632 EEDSGKGRRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRNIK 691

Query: 795 SSPYF 799
            S  F
Sbjct: 692 ESLLF 696


>gi|150391818|ref|YP_001321867.1| excinuclease ABC subunit B [Alkaliphilus metalliredigens QYMF]
 gi|149951680|gb|ABR50208.1| excinuclease ABC, B subunit [Alkaliphilus metalliredigens QYMF]
          Length = 664

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/661 (53%), Positives = 480/661 (72%), Gaps = 2/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++Q+DY P+GDQP AI  L +GI    + Q+LLGVTGSGKTFTMA +I+ +Q+P +
Sbjct: 1   MNGFEIQSDYQPTGDQPKAIEALSQGIKEGLRDQVLLGVTGSGKTFTMANIIQDVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL SEFK FFP+NAVEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID+
Sbjct: 61  IIAHNKTLAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYVVQSDTYIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +LLER D I+V+SVSCIYG+G    Y +++V L+ G + ++ ++L  LV  QY
Sbjct: 121 LRHSATSALLERRDVIIVASVSCIYGLGDPAEYKKLVVSLRTGMTKDRDQVLRQLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI  IRGTFRV GD +EIFP+   + A RV  FG++I+ I+E   LTG+ +     I
Sbjct: 181 LRNDINFIRGTFRVRGDIVEIFPASSSENAIRVEFFGDEIDRITEINSLTGEIVGLRNHI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHY T    +  A++ I++EL  ++   ++E +L+EAQR++QR  YD+EML   G
Sbjct: 241 SIFPASHYATSADKIENAIESIEQELIEQVAFFKQEEKLIEAQRIQQRTMYDIEMLREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR LTGR  G  P TL +Y P+D L+ VDESH TIPQ+ GMY GD  RK +L
Sbjct: 301 FCQGIENYSRQLTGRKAGSRPFTLIDYFPDDYLIIVDESHATIPQVGGMYAGDRSRKESL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             +GFRLPS +DNRPL F+E+  L    + VSATPG +ELE+    I EQIIRPTGL+DP
Sbjct: 361 INHGFRLPSALDNRPLNFKEFEKLVNQILYVSATPGPYELER-NQRIEEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++++  EI+   ++  R+L+T LTK+M+EDLT YL E +I+VRY+HS++ 
Sbjct: 420 VVEVRPIEGQIDNLVGEIHKRIEKKQRVLVTTLTKKMSEDLTNYLKEIDIKVRYLHSDIL 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T+LIQT GR
Sbjct: 480 TMERMEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSATALIQTTGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VI+YA+ ITKS+Q AIDET RRR  Q+E+N KH I P+++ +K+  VI+   
Sbjct: 540 AARNVEGRVIMYANRITKSMQKAIDETERRRLIQIEYNDKHQITPKTIVKKVRNVIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + +       ++ +  +L+ ++ +  ++ L+ +M  AAD L FE AA +RD++K+LK   
Sbjct: 600 VAEEKEKY-GLNKEIEALTPEEVEELIQRLQIEMMQAADELQFERAAELRDQVKKLKKVY 658

Query: 798 Y 798
           +
Sbjct: 659 F 659


>gi|229087642|ref|ZP_04219771.1| UvrABC system protein B [Bacillus cereus Rock3-44]
 gi|228695683|gb|EEL48539.1| UvrABC system protein B [Bacillus cereus Rock3-44]
          Length = 658

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/656 (53%), Positives = 478/656 (72%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI QL+ GI++ +K Q+LLG TG+GKTFT++ VI+ +++P +VMA
Sbjct: 5   FEIVSEYSPQGDQPRAIKQLVAGINNGKKHQVLLGATGTGKTFTISNVIKEVKKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ +++   R+  FG++I+ I E   LTG+ +   E + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASIDEHCIRIEFFGDEIDRIREVNALTGEVLAEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHVT+PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGSTPYTLIDYFPEDFLIVMDESHVTVPQVRAMYNGDKARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP ++
Sbjct: 365 GFRLPSAMDNRPLMFEEFEEKTNQVVYVSATPGPYELEHAPE-VVEQIIRPTGLLDPQID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YAD ITKS+ +A++ET RRREKQ  +N++H I P+++++++ +VI      +
Sbjct: 544 NENGHVIMYADRITKSMGIAMEETKRRREKQEAYNEEHGITPKTIQKEVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  L++ 
Sbjct: 604 ETEVYDAAPAKK--MTKKEREKTIAKVEAEMKEAAKALDFERAAELRDLLLELQAE 657


>gi|188991070|ref|YP_001903080.1| excinuclease ABC subunit B [Xanthomonas campestris pv. campestris
           str. B100]
 gi|229557971|sp|B0RRD9|UVRB_XANCB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|167732830|emb|CAP51024.1| excinuclease ABC subunit B [Xanthomonas campestris pv. campestris]
          Length = 673

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/669 (55%), Positives = 488/669 (72%), Gaps = 12/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FELVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L IG+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G I E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEITELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E++   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV   I ++++    ED
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVARPISDIMEG-ARED 603

Query: 741 AATTNISID-----------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           AA                  A   ++   +    LK+L ++M+  A +L FE AA+IRD+
Sbjct: 604 AAEKKAGKGRSKSRQVAEEPADYRAMGPAEIAGKLKALEQKMYQHAKDLEFEAAAQIRDQ 663

Query: 790 IKRLKSSPY 798
           I++LK++  
Sbjct: 664 IQKLKAASL 672


>gi|194015177|ref|ZP_03053793.1| excinuclease ABC, B subunit [Bacillus pumilus ATCC 7061]
 gi|194012581|gb|EDW22147.1| excinuclease ABC, B subunit [Bacillus pumilus ATCC 7061]
          Length = 661

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/657 (53%), Positives = 475/657 (72%), Gaps = 2/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI +L++GIH  ++ Q LLG TG+GKTFT++ +I+ + +P +V+A
Sbjct: 5   FELVSNYQPQGDQPKAIEKLVEGIHQGKQHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+++SVSCIYG+GS E Y ++++ L+    +E+ +LL  LV  QY R 
Sbjct: 125 SATSSLFERRDVIIIASVSCIYGLGSPEEYRELVLSLRTEMEIERNQLLRKLVDIQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++   RV  FG++IE I E   LTG+ + + E + I+
Sbjct: 185 DIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+  I++EL+ +L +L    +LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMEKAIINIEQELEEQLEKLRDNEKLLEAQRLEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D ++ VDESHVTIPQI  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPSGSTPYTLLDYFPDDFMIVVDESHVTIPQIRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       + VSATPG +ELE+    +VEQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLTFDEFEKHINHIVHVSATPGPYELEKTPE-VVEQIIRPTGLLDPIIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+   ++  R+L+T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDDLIGEIHARVEKNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGK+DVLVGINLLREGLDIPE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-E 739
           N   +VI+YAD +TKS+ +AI ET RRRE+Q  +N+K+ I PQ++ +KI + I    + E
Sbjct: 544 NSEGRVIMYADKMTKSMDIAIQETKRRREQQEAYNEKYGITPQTIHKKIRDAIKATKIHE 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           ++     +   +   +SKK+ +  ++ +  +M  AA  L+FE+AA +RD +  LK+ 
Sbjct: 604 ESEEYETNAAPKLSKMSKKEREKVIEKVEMEMKDAAKALDFEKAAELRDLLLELKAE 660


>gi|218768351|ref|YP_002342863.1| excinuclease ABC subunit B [Neisseria meningitidis Z2491]
 gi|9910889|sp|P56996|UVRB_NEIMA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|121052359|emb|CAM08691.1| excinuclease ABC subunit B [Neisseria meningitidis Z2491]
          Length = 675

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/665 (53%), Positives = 479/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A   IKEEL+ R+    KE R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACDSIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPSNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDSGKGRRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRNIK 667

Query: 795 SSPYF 799
            +  F
Sbjct: 668 ENLLF 672


>gi|84393387|ref|ZP_00992146.1| excinuclease ABC subunit B [Vibrio splendidus 12B01]
 gi|84375996|gb|EAP92885.1| excinuclease ABC subunit B [Vibrio splendidus 12B01]
          Length = 676

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/671 (53%), Positives = 482/671 (71%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + +DY+PSGDQP AI +LL G+ S    Q LLGVTGSGKTFT+A VI   QRPAI+
Sbjct: 3   KLFDLVSDYNPSGDQPTAITKLLDGLDSGLAHQTLLGVTGSGKTFTLANVISQSQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K+FFP+N+VEYFVSYYDYYQPEAYVP TDT+IEK++SIN  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKSFFPNNSVEYFVSYYDYYQPEAYVPTTDTFIEKDASINAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  +SY +M++ L  G+ ++Q+++L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPKSYLKMMLHLSRGEVMDQRDILRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RG FRV G+ I+IFP+  +  A R+ MF ++++ IS F PLTG    R++   
Sbjct: 183 RNDVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEVDCISIFDPLTGAVKQRDLPRF 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  +HYVTPR  +  A++ IK+EL+ R   L+   +LLE QR+ QR  +D+EM+   G
Sbjct: 243 TVYPKTHYVTPREKILEAIEKIKDELRDRAQYLKDNNKLLEEQRISQRTQFDIEMMTELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GE PPTLF+Y+P+D LL +DESHVT+PQI  MY+GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRAEGEAPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRP++FEE+  + P TI VSATPG++E+E+  G I +Q++RPTGL+DP
Sbjct: 363 VEFGFRLPSALDNRPMKFEEFESIAPQTIFVSATPGNYEIEKSDGEIADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI + + +  R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ 
Sbjct: 423 IIEVRPVATQVDDLLSEIRIRSVKEERVLVTTLTKRMAEDLTEYLSEHGVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+  + ILY D+ITKS++ AIDET RRREKQ  +N++  I PQ++K  I ++++   
Sbjct: 543 AARNLEGRAILYGDSITKSMRKAIDETDRRREKQQAYNEEQGITPQALKRNIKDIMELGD 602

Query: 738 LEDAATTNISI----------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           L  +     S                 L+ ++    +  L   M+  A NL FE AA+ R
Sbjct: 603 LTKSKQQRQSKQVPLSKVAEPSESYAVLTPQQLDKEISKLETAMYQHAQNLEFELAAQKR 662

Query: 788 DEIKRLKSSPY 798
           DEI++L+    
Sbjct: 663 DEIEQLRKQFI 673


>gi|289665218|ref|ZP_06486799.1| excinuclease ABC subunit B [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 673

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/670 (54%), Positives = 487/670 (72%), Gaps = 12/670 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FRLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQHVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L +G+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G + E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI+   + G R+L+T LTKRM+E+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEIHERIKLGDRVLVTTLTKRMSENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV+  I ++++    ED
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPISDIMEG-ARED 603

Query: 741 AATTNISID-----------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           A                       ++   +    LKSL ++M+  A +L FE AA+IRD+
Sbjct: 604 AVEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGKLKSLEQKMYQHAKDLEFEAAAQIRDQ 663

Query: 790 IKRLKSSPYF 799
           I++LK++   
Sbjct: 664 IQKLKAASLG 673


>gi|21243355|ref|NP_642937.1| excinuclease ABC subunit B [Xanthomonas axonopodis pv. citri str.
           306]
 gi|23822294|sp|Q8PJB1|UVRB_XANAC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|21108901|gb|AAM37473.1| excinuclease ABC subunit B [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 673

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/669 (54%), Positives = 487/669 (72%), Gaps = 10/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +QRP +VMA
Sbjct: 5   FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQRPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L +G+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +E+ +  G + E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYEVRESAGEVTELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E++   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV+  I ++++    + 
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPIADIMEGARDDA 604

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           A   +                  ++   +    LKSL ++M+  A +L FE AA+IRD+I
Sbjct: 605 AEKKSGKGRSKSRHVAEETPDYRAMKPAEIAGKLKSLEQKMYQHAKDLEFEAAAQIRDQI 664

Query: 791 KRLKSSPYF 799
           ++LK++   
Sbjct: 665 QKLKAASLG 673


>gi|260779308|ref|ZP_05888200.1| excinuclease ABC subunit B [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605472|gb|EEX31767.1| excinuclease ABC subunit B [Vibrio coralliilyticus ATCC BAA-450]
          Length = 676

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/673 (53%), Positives = 483/673 (71%), Gaps = 11/673 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + +DY PSGDQP AI QLL+G+ S    Q LLGVTGSGKTFT+A VI   QRPAI+
Sbjct: 3   KVFDLVSDYQPSGDQPTAINQLLEGLDSGLAHQTLLGVTGSGKTFTLANVIAQAQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  +SY QM++ ++ GD ++Q+++L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPQSYLQMMLHVRRGDVMDQRDILRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RG FRV G+ I++FP+  +  A R+ MF ++I+ IS F PLTG    R++   
Sbjct: 183 RNDVAFERGQFRVRGEVIDVFPAESDQDAVRIEMFDDEIDCISIFDPLTGVVKQRDLPRF 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK EL+ R   L    +LLE QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPRDKILDAIENIKVELESRKKHLLDNNKLLEEQRISQRTQFDIEMMTELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLVIDESHVTVPQIGAMFKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G + +Q++RPTGL+DP
Sbjct: 363 VEFGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELEKSDGEVADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI + + +  R+L+T LTKRMAEDLTEYL E ++RVRY+HS++ 
Sbjct: 423 ELEVRPVATQVDDLLSEIRIRSAKDERVLVTTLTKRMAEDLTEYLTEHDVRVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN++ K ILYAD++TKS+  A+ ET RRREKQ  +N K  I PQ++K  I ++++   
Sbjct: 543 AARNISGKAILYADSVTKSMHKAMGETNRRREKQQAYNDKMGIEPQALKRNIKDIMELGD 602

Query: 738 LEDAATTNISIDAQQLS----------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           +  +     +                 ++ ++ +  +  L  QM+  A +L FE AA  R
Sbjct: 603 IAKSKKQRTNKQVPLSKVAEPSQSYNVMTPQQLEKEISKLEAQMYQHAQDLEFEAAAEKR 662

Query: 788 DEIKRLKSSPYFQ 800
           D+I++L+      
Sbjct: 663 DQIEKLRQQFIVN 675


>gi|269139892|ref|YP_003296593.1| excinuclease ABC subunit B [Edwardsiella tarda EIB202]
 gi|267985553|gb|ACY85382.1| excinuclease ABC subunit B [Edwardsiella tarda EIB202]
 gi|304559728|gb|ADM42392.1| Excinuclease ABC subunit B [Edwardsiella tarda FL6-60]
          Length = 672

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/664 (56%), Positives = 468/664 (70%), Gaps = 7/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L  G+      Q LLGVTGSGKTFT+A VI  + RP +VMA
Sbjct: 5   FKLHSAFQPSGDQPEAIRRLEAGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKQFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRSILRRLSELQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  +D A RV +F +++E +S F PLTGQ +R V    +Y
Sbjct: 185 DQAFARGTFRVRGEVIDIFPAEADDEALRVELFDDEVERLSLFDPLTGQLLRTVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ I  EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIHAELATRRQSLLANNKLLEEQRLAQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+    +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGNYELEKSGDEVIDQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EIN  A  G R+L+T LTKRMAEDLTEYL E  +RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEINQRAAIGERVLVTTLTKRMAEDLTEYLEEHGVRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FD LVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDALVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           N+N K ILYAD +T S+  AI ET RRRE+Q   N  H I PQ++ +K+ +++       
Sbjct: 545 NLNGKAILYADKMTPSMARAIGETERRRERQQAFNLAHGITPQALNKKVTDILQLGDAPS 604

Query: 735 -PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                                LS K+ +  ++ L  QM+  A NL FE+AA +RDEI  L
Sbjct: 605 RSRAKGTRGQRAAEPRTDYRDLSAKQIEQQIQRLETQMYQHAQNLEFEQAAALRDEIHIL 664

Query: 794 KSSP 797
           +   
Sbjct: 665 REQF 668


>gi|23099943|ref|NP_693409.1| excinuclease ABC subunit B [Oceanobacillus iheyensis HTE831]
 gi|81846020|sp|Q8ENJ5|UVRB_OCEIH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|22778174|dbj|BAC14444.1| excinuclease ABC subunit B [Oceanobacillus iheyensis HTE831]
          Length = 660

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/656 (53%), Positives = 477/656 (72%), Gaps = 1/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI ++ K + + ++ Q LLG TG+GKTFTM+ V++ + RP +V+A
Sbjct: 5   FELVSAYDPAGDQPNAINEITKKVLAGQRHQTLLGATGTGKTFTMSNVVKEINRPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D ++V+SVSCIYG+G+ E Y   ++ L++G   ++ +LL  LV+ QY R 
Sbjct: 125 SATSALFERQDVLIVASVSCIYGLGNPEEYKSQVLSLRMGMEKDRDQLLRDLVEVQYARN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GDS+EI P+  E+   RV  FG++I+ I E   LTG+ I + E + I+
Sbjct: 185 DINFQRGTFRVRGDSVEIIPASHEEYCIRVEFFGDEIDRIREVDALTGEIIGDREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ +L E+   G+LLEAQRLEQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKIAIQNIEKELEEQLKEMRDNGKLLEAQRLEQRTNYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PG  P TL ++ PED L+ +DESHVT+PQI GM+ GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRGPGAVPYTLLDFFPEDFLVIIDESHVTLPQIRGMFNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPLRF+E+       + VSATPG +ELE    +  EQIIRPTGL+DP VE
Sbjct: 365 GFRLPSAMDNRPLRFQEFEDKTKQLVYVSATPGPYELEHSPEMT-EQIIRPTGLLDPKVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++++ +EI +  ++  R+L+T LTK+M+EDLT+YL E  ++V Y+HSE+KTLE
Sbjct: 424 VRPIEGQIDNLIEEIRIRMEKNERVLITTLTKKMSEDLTDYLKEIGMKVAYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIE+IRDLR+GKFDVLVGINLLREGLDIPE  LV+ILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RIEVIRDLRVGKFDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD +T S++ AIDET RRR  Q E+N++H I P+++++++ +VI      +
Sbjct: 544 NENGKVIMYADKMTDSMKKAIDETNRRRTIQTEYNEQHGITPKTIRKEVRDVIKATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              +      Q   ++KK+ +  ++ +  +M  AA +L+FE+AA +RD I  LK+ 
Sbjct: 604 ETESYEPKTKQINKMTKKEREKVIEQMENEMKQAAKDLDFEKAAELRDVILELKAE 659


>gi|229175835|ref|ZP_04303333.1| UvrABC system protein B [Bacillus cereus MM3]
 gi|228607568|gb|EEK64892.1| UvrABC system protein B [Bacillus cereus MM3]
          Length = 658

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 480/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLIDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEGKTNQVIYVSATPGPYELEQAPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +NK+H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNKEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  ++ A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 EPETYEAVPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|94986685|ref|YP_594618.1| excinuclease ABC subunit B [Lawsonia intracellularis PHE/MN1-00]
 gi|94730934|emb|CAJ54297.1| Helicase subunit of the DNA excision repair complex [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 676

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/670 (53%), Positives = 468/670 (69%), Gaps = 10/670 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F ++T Y P GDQP AI Q++  I S  K Q+LLGVTGSGKTFTMA VI    RPA+++
Sbjct: 5   LFTIKTQYKPQGDQPEAIKQIVSNIQSGVKDQVLLGVTGSGKTFTMANVIAQCNRPALIL 64

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY+EFK  FP+NAVEYFVSYYDYYQPEAYVP +D YIEK+SSIN+ ID++R
Sbjct: 65  APNKTLAAQLYNEFKELFPYNAVEYFVSYYDYYQPEAYVPSSDVYIEKDSSINDDIDKLR 124

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT +LL R D I+++SVSCIYG+GS E Y+++I+ ++ G  +   E+++ LV  QY+R
Sbjct: 125 HAATHALLTRRDVIIIASVSCIYGLGSPEYYARLIIPVEKGQQINMDEIITRLVDIQYQR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+   R TFRV GD +EI P++  + A R+  FGN+IEEI E  PLTG+ + NV    I
Sbjct: 185 NDMDFHRATFRVRGDVLEIIPAYEHERALRLEFFGNEIEEIREIDPLTGEVLGNVGKTVI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  SHYV+ R  L  AM  I++EL  RL + +   +L+EAQRLEQ+   DLEM++  G C
Sbjct: 245 YPASHYVSDRDNLIRAMTDIQKELCERLYDFQATNKLVEAQRLEQKTQLDLEMIQEFGYC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L GR PG+PP TL +Y P+D L F+DESH+ IPQ+ GM++GD  RK TL +
Sbjct: 305 NGIENYSRHLDGRKPGDPPSTLLDYFPKDFLFFIDESHIAIPQVGGMFKGDRSRKQTLVD 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL F E+       I VSATPG WEL++ QGII EQIIRPTGL+DP +
Sbjct: 365 FGFRLPSALDNRPLEFHEFLTRLNQVIYVSATPGPWELDRSQGIITEQIIRPTGLLDPEI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + Q+E + +E         R+L+T LTKRMAEDLT+YL   +I  RY+HS++ TL
Sbjct: 425 EVRPIKGQIESLLEECYQRVNSHERVLITTLTKRMAEDLTDYLNNMSINTRYLHSDIDTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+ II+ LR G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT GRAA
Sbjct: 485 ERMAIIKSLRTGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTGSLIQTFGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+ KVIL+ADT+TKS++ AIDET RRR  Q E N KHNI P+++++ ++   D I   
Sbjct: 545 RNVSGKVILFADTMTKSMKAAIDETRRRRALQQEWNTKHNITPKTIQKSVVTPFDMISAN 604

Query: 740 DAATT-----NISIDAQQ-----LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            ++         S+D ++        S +    ++K L  +M  AA  L FE+AA +RD 
Sbjct: 605 TSSKKGCRKNKHSMDTKELFVITDKTSPEDITKYIKQLEYEMKEAAKELEFEKAAVLRDR 664

Query: 790 IKRLKSSPYF 799
           IK  +     
Sbjct: 665 IKVTREQFLL 674


>gi|325208291|gb|ADZ03743.1| excinuclease ABC, B subunit [Neisseria meningitidis NZ-05/33]
          Length = 699

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/665 (53%), Positives = 481/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 33  SPFKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 92

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 93  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 152

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 153 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 212

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 213 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 272

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G 
Sbjct: 273 VFPSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGF 332

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 333 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 392

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 393 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 451

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 452 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 511

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 512 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 571

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 572 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 631

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 632 EEDSGKGRRQGKNKVKVGEIHNEEDTIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRNIK 691

Query: 795 SSPYF 799
            S  F
Sbjct: 692 ESLLF 696


>gi|218906339|ref|YP_002454173.1| excinuclease ABC, B subunit [Bacillus cereus AH820]
 gi|228917770|ref|ZP_04081310.1| UvrABC system protein B [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|301056626|ref|YP_003794837.1| excinuclease ABC subunit B [Bacillus anthracis CI]
 gi|218537443|gb|ACK89841.1| excinuclease ABC, B subunit [Bacillus cereus AH820]
 gi|228841875|gb|EEM86982.1| UvrABC system protein B [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|300378795|gb|ADK07699.1| excinuclease ABC subunit B [Bacillus cereus biovar anthracis str.
           CI]
          Length = 658

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|257882916|ref|ZP_05662569.1| excinuclease ABC [Enterococcus faecium 1,231,502]
 gi|294621568|ref|ZP_06700734.1| excinuclease ABC, B subunit [Enterococcus faecium U0317]
 gi|257818574|gb|EEV45902.1| excinuclease ABC [Enterococcus faecium 1,231,502]
 gi|291598873|gb|EFF29924.1| excinuclease ABC, B subunit [Enterococcus faecium U0317]
          Length = 664

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/656 (53%), Positives = 472/656 (71%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL+ G+   +K Q+LLG TG+GKT+T++ +IE + +P +++A
Sbjct: 10  FELVSKYQPAGDQPEAINQLVDGVVGGKKAQILLGATGTGKTYTISNLIEKVNKPTLIIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IV++SVSCI+G+GS   Y + +V ++ G  +++ +L+  LV  Q++R 
Sbjct: 130 SATSSLLERNDVIVIASVSCIFGLGSPFEYQKQVVSIRQGAELDRNQLIRDLVSIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG+++E I E   LTG+ +   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDEVERIREVNALTGEVLGETEHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IKEEL+ RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFVTNDEHMEHAVANIKEELEQRLTVLRNENKLLEAQRLEQRTNYDIEMMLEMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ PED L+  DESHVT+PQI GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRKEGEPPYTLLDFFPEDFLIVADESHVTMPQIRGMYNGDRARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       I VSATPG +E EQ    +++QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRLEEFEKHVNQIIYVSATPGPYEHEQT-DTVIQQIIRPTGLLDPVIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 429 VRPIMGQIDDLVGEINERVEKDQRVFVTTLTKKMAEDLTDYFKELGIKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 489 RTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD +T S++LA+DET+RRR  Q ++N++H I P+++ ++I ++I  I  E 
Sbjct: 549 NEEGKVIMYADKVTDSMRLAMDETSRRRTIQQKYNEEHGIVPKTIIKEIRDLI-SITKES 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  ++      ++K++    L  L K+M  AA  L+FE AA +RD I  LK+S
Sbjct: 608 EDDTKEAVQVSYEEMTKEEKDTLLMKLEKEMKDAAKALDFETAANVRDMILELKAS 663


>gi|227551701|ref|ZP_03981750.1| excision endonuclease subunit UvrB [Enterococcus faecium TX1330]
 gi|257887163|ref|ZP_05666816.1| excinuclease ABC [Enterococcus faecium 1,141,733]
 gi|257895700|ref|ZP_05675353.1| excinuclease ABC [Enterococcus faecium Com12]
 gi|257898270|ref|ZP_05677923.1| excinuclease ABC [Enterococcus faecium Com15]
 gi|293377690|ref|ZP_06623879.1| excinuclease ABC, B subunit [Enterococcus faecium PC4.1]
 gi|293571886|ref|ZP_06682902.1| excinuclease ABC, B subunit [Enterococcus faecium E980]
 gi|227179142|gb|EEI60114.1| excision endonuclease subunit UvrB [Enterococcus faecium TX1330]
 gi|257823217|gb|EEV50149.1| excinuclease ABC [Enterococcus faecium 1,141,733]
 gi|257832265|gb|EEV58686.1| excinuclease ABC [Enterococcus faecium Com12]
 gi|257836182|gb|EEV61256.1| excinuclease ABC [Enterococcus faecium Com15]
 gi|291608140|gb|EFF37446.1| excinuclease ABC, B subunit [Enterococcus faecium E980]
 gi|292643690|gb|EFF61811.1| excinuclease ABC, B subunit [Enterococcus faecium PC4.1]
          Length = 664

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/658 (53%), Positives = 471/658 (71%), Gaps = 2/658 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + Y P+GDQP AI QL+ G+   +K Q+LLG TG+GKT+T++ +IE + +P ++
Sbjct: 8   RRFELVSKYQPAGDQPEAINQLVDGVVGGKKAQILLGATGTGKTYTISNLIEKVNKPTLI 67

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++
Sbjct: 68  IAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKL 127

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSAT SLLERND IV++SVSCI+G+GS   Y + +V ++ G  +++ +L+  LV  Q++
Sbjct: 128 RHSATSSLLERNDVIVIASVSCIFGLGSPFEYQKQVVSIRQGAELDRNQLIRDLVSIQFE 187

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RG FRV GD +EIFP+  ++ A RV  FG+++E I E   LTG+ +   E + 
Sbjct: 188 RNDIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDEVERIREVNALTGEVLGETEHVA 247

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  +H+VT    +  A+  IK EL+ RL  L  E +LLEAQRLEQR  YD+EM+   G 
Sbjct: 248 IFPATHFVTNDEHMEHAVANIKAELEQRLAVLRNENKLLEAQRLEQRTNYDIEMMLEMGY 307

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
              IENYSR++ GR  GEPP TL ++ PED L+  DESHVT+PQI GMY GD  RK  L 
Sbjct: 308 TSGIENYSRHMDGRKEGEPPYTLLDFFPEDFLIVADESHVTMPQIRGMYNGDRARKQMLV 367

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPLR EE+       I VSATPG +E EQ    +++QIIRPTGL+DP 
Sbjct: 368 DYGFRLPSALDNRPLRLEEFEKHVNQIIYVSATPGPYEYEQT-DTVIQQIIRPTGLLDPV 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+Y  E  I+V+Y+HS++KT
Sbjct: 427 IEVRPIMGQIDDLVGEINERVEKDQRVFVTTLTKKMAEDLTDYFKELGIKVKYLHSDIKT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SL+QTIGRA
Sbjct: 487 LERTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN   KVI+YAD +T S++LA+DET+RRR  Q ++N++H I P+++ ++I ++I  I  
Sbjct: 547 ARNEEGKVIMYADKVTDSMRLAMDETSRRRTIQQKYNEEHGIVPKTIIKEIRDLI-SITK 605

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           E    T  ++      ++K++    L  L K+M  AA  L+FE AA +RD I  LK+S
Sbjct: 606 ESEDDTKEAVQVSYEEMTKEEKDTLLMKLEKEMKDAAKALDFETAANVRDMILELKAS 663


>gi|293609812|ref|ZP_06692114.1| UvrABC system protein B [Acinetobacter sp. SH024]
 gi|292828264|gb|EFF86627.1| UvrABC system protein B [Acinetobacter sp. SH024]
 gi|325123037|gb|ADY82560.1| excinuclease ABC subunit B [Acinetobacter calcoaceticus PHEA-2]
          Length = 673

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/668 (55%), Positives = 478/668 (71%), Gaps = 10/668 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + T Y P+GDQP AI +L+ GI    + QLLLGVTGSGKT+TMA VI   QRP IVM
Sbjct: 6   PFDLVTHYQPAGDQPQAIEKLVNGIEHGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVM 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR
Sbjct: 66  AHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V + E++  LV+ QY R
Sbjct: 126 LSATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVEGDRVSRDEIIRRLVEMQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++  +RGT+R+ G+ I+IFP+  +  A R+ +F ++++ I  F PLTG+ +R V  + I
Sbjct: 186 NELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVPRVTI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  SHYVTP+  L  A+  IK+EL+ +L    +  +LLEAQR+EQR  YDLEM++  G  
Sbjct: 246 YPKSHYVTPKDHLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYT 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+GR  GE PPTLF+Y+PED+LL +DESHVT+PQI  MY+GD  RK  L  
Sbjct: 306 NGIENYSRHLSGRPAGEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVN 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP++FEEW  + PTTI VSATP  +ELE+    +VEQ++RPTGL+DP +
Sbjct: 366 YGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAKYELEKSDQ-VVEQVVRPTGLIDPEI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+DV  EIN+      R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T+
Sbjct: 425 EVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++II +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  K ILYAD IT S+Q AIDET RRR KQ+E N+ H I P+S   ++++ ID   + 
Sbjct: 545 RNVKGKAILYADRITDSMQKAIDETERRRAKQIEFNELHGITPRSAVRQVIKEIDSGEVL 604

Query: 740 DAATTNISIDAQQLSLSKKKG---------KAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                +  +  Q  +LS  +            H+  L K+M  A+ +L FE+AARIRDEI
Sbjct: 605 SDDEIDEKVLEQAQALSADERHILSDPKLFSKHITKLEKEMLKASKDLQFEQAARIRDEI 664

Query: 791 KRLKSSPY 798
            RLK+   
Sbjct: 665 IRLKAQML 672


>gi|325847234|ref|ZP_08169986.1| excinuclease ABC, B subunit [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480918|gb|EGC83966.1| excinuclease ABC, B subunit [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 659

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/654 (54%), Positives = 477/654 (72%), Gaps = 6/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P GDQP AI +L  GI   +  Q+L GVTGSGKTFTMA +I+ +QRP +V+A
Sbjct: 6   FVIKSDYTPKGDQPQAIKKLADGIKEGKHHQILQGVTGSGKTFTMANIIQEVQRPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL++EFK FFP NAVEYFVSYYDYYQPEAYV  TDTYI K+SSIN++ID++RH
Sbjct: 66  HNKTLAYQLFTEFKEFFPDNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G  E Y ++++ L+ G  +   +++  L+++Q+ R 
Sbjct: 126 SATMSLFERRDVIIVASVSCIYGLGDPEEYKKLVLSLRPGQEISPDQVMKELIERQFVRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFR  GD ++IFP+  ++ A R+  FG++I+ ISEF  LTG+ I ++    IY
Sbjct: 186 DFDFSRGTFRKRGDVLDIFPAGNDEKAIRIEFFGDEIDRISEFDSLTGKVISHISHGYIY 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T       A+  IKEELK RL ELE E +L+EAQRLEQR  YD+EMLE  G C 
Sbjct: 246 PASHYATTAEKAEAAIVTIKEELKERLAELESENKLVEAQRLEQRTNYDIEMLEEIGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++ R PG  P TL +Y P+D +LFVDESHV+IPQ+ GMY GD  RK  L +Y
Sbjct: 306 GIENYSRHMSQREPGSRPATLIDYFPDDFVLFVDESHVSIPQVGGMYEGDRSRKQNLVDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+  L   T+ VSATPG +E+E+  G +VEQIIRPTGL+DP ++
Sbjct: 366 GFRLPSALDNRPLKFKEFEKLINQTVYVSATPGPYEMEKTGGEVVEQIIRPTGLLDPLID 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++    Q++D+ + I+   ++  R+L+T LTKRMAEDLT+YL E  I+V+Y+HS++KT+E
Sbjct: 426 VKPVENQIDDLIENIHQTIEKKERVLVTTLTKRMAEDLTDYLSENGIKVKYLHSDIKTIE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLGKFDVLVGINLLREGLD+PE  L+AILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 486 RSEIIRDLRLGKFDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT+S++ AI+ET RRR+ Q E NKKH I P ++K+ I E+I      +
Sbjct: 546 NSEGHVIMYADKITRSMKKAIEETERRRKIQTEFNKKHGITPTTIKKNIAEIIQVTEKAE 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             +       ++   S ++ +  L +L  +M+ AA+ L+FE+AA +RD+I ++K
Sbjct: 606 NTSE------EKEEFSPEQVENILINLESEMYKAAEELDFEKAASLRDQIAKMK 653


>gi|196039563|ref|ZP_03106868.1| excinuclease ABC, B subunit [Bacillus cereus NVH0597-99]
 gi|229094262|ref|ZP_04225338.1| UvrABC system protein B [Bacillus cereus Rock3-42]
 gi|196029723|gb|EDX68325.1| excinuclease ABC, B subunit [Bacillus cereus NVH0597-99]
 gi|228689115|gb|EEL42938.1| UvrABC system protein B [Bacillus cereus Rock3-42]
          Length = 658

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKVEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|228923891|ref|ZP_04087168.1| UvrABC system protein B [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835690|gb|EEM81054.1| UvrABC system protein B [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 658

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/656 (53%), Positives = 478/656 (72%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+  L EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEEHLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|229112572|ref|ZP_04242109.1| UvrABC system protein B [Bacillus cereus Rock1-15]
 gi|229147691|ref|ZP_04276034.1| UvrABC system protein B [Bacillus cereus BDRD-ST24]
 gi|228635704|gb|EEK92191.1| UvrABC system protein B [Bacillus cereus BDRD-ST24]
 gi|228670952|gb|EEL26259.1| UvrABC system protein B [Bacillus cereus Rock1-15]
          Length = 658

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|222110830|ref|YP_002553094.1| excinuclease ABC subunit b [Acidovorax ebreus TPSY]
 gi|221730274|gb|ACM33094.1| excinuclease ABC, B subunit [Acidovorax ebreus TPSY]
          Length = 698

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/672 (53%), Positives = 483/672 (71%), Gaps = 7/672 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F +   Y P+GDQP AIA+L++G+   E  Q LLGVTGSGKTFTMA VI  + RPAI+
Sbjct: 23  SPFSLYQPYPPAGDQPEAIAKLVEGVQDGEVFQTLLGVTGSGKTFTMANVIARLGRPAII 82

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++M
Sbjct: 83  FAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQM 142

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R S T+SLLER D ++V++VS IYGIG  ESY +MI+ L++GD + Q++ ++ L++ QY+
Sbjct: 143 RLSCTKSLLERRDVVIVATVSAIYGIGEPESYHRMIMTLRVGDQLSQRDAIAQLIRMQYQ 202

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +    RG FRV GD+I++FP+   ++A R+ +F +++E +  F PLTG+  + +    
Sbjct: 203 RNEQDFSRGKFRVRGDTIDVFPAEHSELAVRIELFDDEVESLQLFDPLTGRIQQKIPRFT 262

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +SHYVTPR  +  A++ IK+EL  RL     EG+L+EAQRLEQR  +DLEML   G 
Sbjct: 263 VYPSSHYVTPRDKVLAAVETIKQELDERLKFFVAEGKLVEAQRLEQRTRFDLEMLSEVGH 322

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENY+R+L+G  PGEPP TL +Y+P D+L+F+DESH  I Q++ MY GD  RK TL 
Sbjct: 323 CKGIENYTRHLSGSAPGEPPSTLTDYLPPDALMFLDESHQMIGQLNAMYNGDRARKTTLV 382

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+       + VSATP  +E E   G +V+Q++RPTGLVDP 
Sbjct: 383 EYGFRLPSALDNRPLKFEEFEQRMRQVVFVSATPADYEKEHS-GQVVDQVVRPTGLVDPE 441

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R A  QV+DV  EI +  Q+  R+L+T LTKRMAE LT+YL +  ++VRY+HS++ T
Sbjct: 442 VEVRPATHQVDDVLQEIRICTQKNQRVLITTLTKRMAEQLTDYLSDNGVKVRYLHSDIDT 501

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 502 VERVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA 561

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN++ K ILYAD IT S++ AI ET RRR KQ+ +N+   I P+S+ +++ ++ID +  
Sbjct: 562 ARNLHGKAILYADRITDSMRKAISETERRRAKQIAYNEARGITPRSIVKQVRDLIDGVYS 621

Query: 739 EDAAT------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           E A         + +  A+   +S+K     +K L K M   A NL FE+AAR+RD++ R
Sbjct: 622 EKAGQEAQRLREDAARQAELEEMSEKDIAREIKRLEKLMLEHARNLEFEQAARVRDQLTR 681

Query: 793 LKSSPYFQGLDD 804
           LK   +     D
Sbjct: 682 LKDRVFGAHGGD 693


>gi|87122161|ref|ZP_01078044.1| excinuclease ABC, B subunit [Marinomonas sp. MED121]
 gi|86162481|gb|EAQ63763.1| excinuclease ABC, B subunit [Marinomonas sp. MED121]
          Length = 676

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/671 (55%), Positives = 485/671 (72%), Gaps = 11/671 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L +GI +    Q LLGVTGSGKTFT+A V+   +RP I+MA
Sbjct: 5   FEVVSQFSPAGDQPKAIEKLTQGIEAGLAHQTLLGVTGSGKTFTIANVVAKAKRPTIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYV  +DT+IEK++S+NE I++MR 
Sbjct: 65  HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G  +SY +M++ L  GD ++Q+++L  L + QY R 
Sbjct: 125 SATKALLEREDVIIVATVSAIYGLGDPQSYLKMMLHLDRGDRIDQRDILRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD I++FP+  ED A R+ +F ++I+ ++ F PLT + IR V  + IY
Sbjct: 185 DVVFERGNFRVRGDVIDVFPADSEDTAVRIELFDDEIDNLAFFDPLTNKTIRKVPRLTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR T+  A++ IK EL  RL +L+   +L+E QRLEQR  YDLEM++  G C 
Sbjct: 245 PKTHYVTPRETVMDAIERIKVELDERLQQLKYLDKLVELQRLEQRTRYDLEMMQELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P ++LL +DESHVT+PQI  MY+GD  RK  L EY
Sbjct: 305 GIENYSRYLSGRPEGSPPPTLFDYLPANALLVIDESHVTVPQIGAMYKGDRSRKENLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEEW  ++P TI+VSATPG +E E  Q  +VEQI+RPTGL+DPPVE
Sbjct: 365 GFRLPSALDNRPMRFEEWEQIKPQTILVSATPGKYEAEH-QDWVVEQIVRPTGLIDPPVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN    +G RIL+T LTKRMAEDLT YLYE  IRVRY+HS++ T+E
Sbjct: 424 IRPVATQVDDLLSEINKRLPKGERILVTTLTKRMAEDLTSYLYEHGIRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N + ILYAD IT SI+ A+ ET RRR KQ  HNK+H I P+ V + + ++++      
Sbjct: 544 NINGRAILYADRITGSIERAMAETDRRRAKQEAHNKEHGIVPKGVSKSVQDIMEGSYNPG 603

Query: 741 AAT---------TNISIDAQQLSLSK-KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           A              S D +  S+      +  +  L+K+M  A++NL FE AA  RD+I
Sbjct: 604 AGKGKQSKAKKVAETSADYKVESMDDVADVRKAIVKLQKEMVEASENLKFELAAGYRDQI 663

Query: 791 KRLKSSPYFQG 801
           + L+      G
Sbjct: 664 RSLQKKLKEVG 674


>gi|238917729|ref|YP_002931246.1| excinuclease ABC subunit B [Eubacterium eligens ATCC 27750]
 gi|238873089|gb|ACR72799.1| excinuclease ABC subunit B [Eubacterium eligens ATCC 27750]
          Length = 689

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/668 (50%), Positives = 460/668 (68%), Gaps = 1/668 (0%)

Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185
           +   ++      +  F + +D+ P GDQP AI  L KG     + + L+GVTGSGKTFTM
Sbjct: 12  YNEKNVGKQGGIMDRFVLHSDFKPMGDQPQAIEALTKGFEEGNQFETLVGVTGSGKTFTM 71

Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           A +I+ +Q+P ++++ NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP++DTYI
Sbjct: 72  ANIIQNVQKPTLIISHNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQSDTYI 131

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
            K+SSIN++ID++RHSAT +L ERND I+V+SVSCIYG+G+   Y  M++ L+ G   ++
Sbjct: 132 AKDSSINDEIDKLRHSATAALSERNDVIIVASVSCIYGLGAPVDYKNMVISLRPGMEKDR 191

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
            + +  L+  QY R D    RGTFRV GD +E++PS     A RV  FG++++ ISE   
Sbjct: 192 DDCIRKLIDIQYVRNDQDFKRGTFRVRGDVVEVYPSSSSGDAIRVEFFGDEVDRISEIDS 251

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           LTG+    +E I I+ NSHYV  +  ++ A++ IK EL  R+   + E +LLEAQR+E+R
Sbjct: 252 LTGEVKGVLEHIAIFPNSHYVVEKEKMDAAIENIKAELAERVKYFKSEDKLLEAQRIEER 311

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
             +D+EM++ TG C  IENYSR+L G   G PP TL +Y P+D L+ VDESH+TIPQI G
Sbjct: 312 TNFDIEMMQETGFCSGIENYSRHLAGLPAGCPPYTLMDYFPDDFLIIVDESHITIPQIRG 371

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MY GD  RK TL +YGFRLPS  DNRPL F E+       + VSATP ++E E  + +  
Sbjct: 372 MYAGDQSRKTTLVDYGFRLPSAKDNRPLNFSEFESKISQMLFVSATPSTYEAEH-ELMRT 430

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           EQ+IRPTGL+DP + ++    Q++D+  EIN    +  ++L+T LTKRMAEDLT+YL E 
Sbjct: 431 EQVIRPTGLLDPEITVKPIEGQIDDLISEINKETAKKNKVLVTTLTKRMAEDLTDYLKEA 490

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            IRV+Y+H+++ TLER +IIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFL
Sbjct: 491 GIRVKYLHADIDTLERQKIIRDMRLDGFDVLVGINLLREGLDIPEISLVAILDADKEGFL 550

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           R++TSLIQTIGRAARN    VI+YAD IT+S++ AI ET RRR+ Q ++N +H I PQ++
Sbjct: 551 RTETSLIQTIGRAARNAEGHVIMYADKITESMEKAISETERRRKIQQDYNDEHGITPQTI 610

Query: 726 KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           K+ + ++I      +    +  +     S+S K+ +     + K M  AA  LNFEEAA+
Sbjct: 611 KKAVRDLISISKAAEPGDASGKLKVDYESMSIKELEKVKTQVEKNMRKAAAELNFEEAAQ 670

Query: 786 IRDEIKRL 793
           +RD++  +
Sbjct: 671 LRDKMIEI 678


>gi|149190377|ref|ZP_01868649.1| excinuclease ABC subunit B [Vibrio shilonii AK1]
 gi|148835756|gb|EDL52721.1| excinuclease ABC subunit B [Vibrio shilonii AK1]
          Length = 676

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/666 (54%), Positives = 474/666 (71%), Gaps = 11/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY PSGDQP AIAQL+ G+ S    Q LLGVTGSGKTFT+A VI   QRPAI++A
Sbjct: 5   FELVSDYQPSGDQPTAIAQLVDGLDSGLAHQTLLGVTGSGKTFTLANVIAQSQRPAILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKGFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  +SY +M++ +  G  ++Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDAIIVASVSAIYGLGDPDSYLKMMLHVTRGAVIDQRDILLRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A R+ MF ++I+ IS F PLTG    R++    I
Sbjct: 185 DVAFERGQFRVRGEVIDIFPAESDQEAVRLEMFDDEIDCISLFDPLTGVITERDIARYTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL  R   L+   +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRDRILDAIENIKVELAARQTYLKDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRSEGEPPPTLFDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKETLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+F+E+  + P TI VSATP ++ELE+  G + +Q++RPTGL+DP +
Sbjct: 365 YGFRLPSALDNRPLKFDEFEMIAPQTIFVSATPSTYELEKSDGDVADQVVRPTGLLDPEI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  E+   A    R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ T+
Sbjct: 425 EVRPVATQVDDLLSEVRARAAIDERVLVTTLTKRMAEDLTEYLSEHGVKVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERTEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K ILY D IT S+Q AI+ET RRREKQ  +N ++ + P ++K  I ++++   + 
Sbjct: 545 RNLKGKAILYGDRITNSMQKAINETNRRREKQHAYNVENGMVPMALKRNIKDIMEIGSVA 604

Query: 740 DAA----------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                        +         ++LS +  +  +  L  +M+  A NL FE AA  RDE
Sbjct: 605 KGGKPKKGKQVPLSKVAEPSQAYVALSPQDLEKQILKLEAEMYQHAQNLEFELAAEKRDE 664

Query: 790 IKRLKS 795
           I++L+ 
Sbjct: 665 IEKLRQ 670


>gi|69248957|ref|ZP_00604830.1| Excinuclease ABC, B subunit [Enterococcus faecium DO]
 gi|257878495|ref|ZP_05658148.1| excinuclease ABC [Enterococcus faecium 1,230,933]
 gi|257884374|ref|ZP_05664027.1| excinuclease ABC [Enterococcus faecium 1,231,501]
 gi|257889305|ref|ZP_05668958.1| excinuclease ABC [Enterococcus faecium 1,231,410]
 gi|257894318|ref|ZP_05673971.1| excinuclease ABC [Enterococcus faecium 1,231,408]
 gi|258615979|ref|ZP_05713749.1| excinuclease ABC subunit B [Enterococcus faecium DO]
 gi|260560084|ref|ZP_05832262.1| excinuclease ABC [Enterococcus faecium C68]
 gi|261207428|ref|ZP_05922114.1| excinuclease ABC [Enterococcus faecium TC 6]
 gi|289566472|ref|ZP_06446897.1| excinuclease ABC, B subunit [Enterococcus faecium D344SRF]
 gi|293557297|ref|ZP_06675843.1| excinuclease ABC, B subunit [Enterococcus faecium E1039]
 gi|293560169|ref|ZP_06676671.1| excinuclease ABC, B subunit [Enterococcus faecium E1162]
 gi|293568102|ref|ZP_06679439.1| excinuclease ABC, B subunit [Enterococcus faecium E1071]
 gi|294616497|ref|ZP_06696278.1| excinuclease ABC, B subunit [Enterococcus faecium E1636]
 gi|314939958|ref|ZP_07847158.1| excinuclease ABC subunit B [Enterococcus faecium TX0133a04]
 gi|314942567|ref|ZP_07849401.1| excinuclease ABC subunit B [Enterococcus faecium TX0133C]
 gi|314947465|ref|ZP_07850880.1| excinuclease ABC subunit B [Enterococcus faecium TX0082]
 gi|314952489|ref|ZP_07855490.1| excinuclease ABC subunit B [Enterococcus faecium TX0133A]
 gi|314992414|ref|ZP_07857840.1| excinuclease ABC subunit B [Enterococcus faecium TX0133B]
 gi|314996254|ref|ZP_07861313.1| excinuclease ABC subunit B [Enterococcus faecium TX0133a01]
 gi|68194330|gb|EAN08843.1| Excinuclease ABC, B subunit [Enterococcus faecium DO]
 gi|257812723|gb|EEV41481.1| excinuclease ABC [Enterococcus faecium 1,230,933]
 gi|257820212|gb|EEV47360.1| excinuclease ABC [Enterococcus faecium 1,231,501]
 gi|257825665|gb|EEV52291.1| excinuclease ABC [Enterococcus faecium 1,231,410]
 gi|257830697|gb|EEV57304.1| excinuclease ABC [Enterococcus faecium 1,231,408]
 gi|260073919|gb|EEW62243.1| excinuclease ABC [Enterococcus faecium C68]
 gi|260078319|gb|EEW66024.1| excinuclease ABC [Enterococcus faecium TC 6]
 gi|289161737|gb|EFD09612.1| excinuclease ABC, B subunit [Enterococcus faecium D344SRF]
 gi|291589184|gb|EFF20995.1| excinuclease ABC, B subunit [Enterococcus faecium E1071]
 gi|291590645|gb|EFF22373.1| excinuclease ABC, B subunit [Enterococcus faecium E1636]
 gi|291600549|gb|EFF30855.1| excinuclease ABC, B subunit [Enterococcus faecium E1039]
 gi|291605841|gb|EFF35273.1| excinuclease ABC, B subunit [Enterococcus faecium E1162]
 gi|313589576|gb|EFR68421.1| excinuclease ABC subunit B [Enterococcus faecium TX0133a01]
 gi|313593049|gb|EFR71894.1| excinuclease ABC subunit B [Enterococcus faecium TX0133B]
 gi|313595395|gb|EFR74240.1| excinuclease ABC subunit B [Enterococcus faecium TX0133A]
 gi|313598671|gb|EFR77516.1| excinuclease ABC subunit B [Enterococcus faecium TX0133C]
 gi|313640792|gb|EFS05372.1| excinuclease ABC subunit B [Enterococcus faecium TX0133a04]
 gi|313646015|gb|EFS10595.1| excinuclease ABC subunit B [Enterococcus faecium TX0082]
          Length = 664

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/656 (53%), Positives = 471/656 (71%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL+ G+   +K Q+LLG TG+GKT+T++ +IE + +P +++A
Sbjct: 10  FELVSKYQPAGDQPEAINQLVDGVVGGKKAQILLGATGTGKTYTISNLIEKVNKPTLIIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IV++SVSCI+G+GS   Y + +V ++ G  +++ +L+  LV  Q++R 
Sbjct: 130 SATSSLLERNDVIVIASVSCIFGLGSPFEYQKQVVSIRQGAELDRNQLIRDLVSIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG+++E I E   LTG+ +   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDEVERIREVNALTGEVLGETEHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK EL+ RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFVTNDEHMEHAVANIKAELEQRLTVLRNENKLLEAQRLEQRTNYDIEMMLEMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ PED L+  DESHVT+PQI GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRKEGEPPYTLLDFFPEDFLIVADESHVTMPQIRGMYNGDRARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       I VSATPG +E EQ    +++QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRLEEFEKHVNQIIYVSATPGPYEHEQT-DTVIQQIIRPTGLLDPVIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 429 VRPIMGQIDDLVGEINERVEKDQRVFVTTLTKKMAEDLTDYFKELGIKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 489 RTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD +T S++LA+DET+RRR  Q ++N++H I P+++ ++I ++I  I  E 
Sbjct: 549 NEEGKVIMYADKVTDSMRLAMDETSRRRTIQQKYNEEHGIVPKTIIKEIRDLI-SITKES 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  ++      ++K++    L  L K+M  AA  L+FE AA +RD I  LK+S
Sbjct: 608 EDDTKEAVQVSYEEMTKEEKDTLLMKLEKEMKDAAKALDFETAANVRDMILELKAS 663


>gi|153812682|ref|ZP_01965350.1| hypothetical protein RUMOBE_03089 [Ruminococcus obeum ATCC 29174]
 gi|149831198|gb|EDM86287.1| hypothetical protein RUMOBE_03089 [Ruminococcus obeum ATCC 29174]
          Length = 662

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/667 (51%), Positives = 464/667 (69%), Gaps = 5/667 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI +L+KG     + + LLGVTGSGKTFTMA VI  + +P +
Sbjct: 1   MDHFELHSEYKPTGDQPQAIEKLVKGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDTYI K++S N++ID+
Sbjct: 61  VLAHNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIAKDASTNDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT +L ER D IVVSSVSCIYG+G+ E +  M++ L+ G   ++ E++  L+  QY
Sbjct: 121 LRLSATAALCERKDVIVVSSVSCIYGLGAPEEFFDMMISLRPGMEKDRDEVIKELIDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RGTFRV GD +EIFP++  D A RV  FG++I+ I+E   LTG+    ++  
Sbjct: 181 NRNEMDFHRGTFRVRGDVLEIFPANYSDRAIRVEFFGDEIDRITEVDVLTGEIHNELKHA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV P+  +  A   I EE+K ++   + E +L+EAQR+ +R  +D+EM++ TG
Sbjct: 241 AIFPASHYVVPQSQIQKAADAILEEMKEQVSYFKSEDKLIEAQRIAERTNFDVEMMKETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTG  PG+PP TL +Y  +D LL +DESH T+ Q+ GMY GD  RK TL
Sbjct: 301 FCSGIENYSRHLTGLAPGQPPYTLMDYFKDDFLLIIDESHKTVSQVGGMYAGDQSRKQTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL F E+       + VSATPG +E E  + +  EQIIRPTGL+DP
Sbjct: 361 VDYGFRLPSAKDNRPLSFTEFENKLDQVMFVSATPGQYEAEH-ELLRAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++D+  E+N    +G +IL+T LTKRMAEDLT+Y+ +  IRVRY+HS++ 
Sbjct: 420 KVEVRPVEGQIDDLISEVNKEVDKGHKILITTLTKRMAEDLTDYMKDVGIRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TLERAEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSEVSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD +T S++ AI ET RRR  Q  +NK+H I P ++K+ + ++I   +
Sbjct: 540 AARNSEGHVIMYADVMTDSMRKAIQETERRRTIQEAYNKEHGITPTTIKKAVRDLI--TV 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            +  A T   +  +  S+++K+    +  + KQM  AA +LNFE+AA +RD++  LK S 
Sbjct: 598 SKAVAETEDKLKKEPESMTRKELTKLIGQVEKQMRAAAADLNFEQAAELRDKMIELKKS- 656

Query: 798 YFQGLDD 804
               +D+
Sbjct: 657 -LDEMDE 662


>gi|296314477|ref|ZP_06864418.1| excinuclease ABC subunit B [Neisseria polysaccharea ATCC 43768]
 gi|296838778|gb|EFH22716.1| excinuclease ABC subunit B [Neisseria polysaccharea ATCC 43768]
          Length = 675

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/665 (53%), Positives = 481/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++ Q++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIAQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E+  G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYE-EEYAGQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+    +      ++ +    +++     +  L K M  AA +L FEEAA IRD I+ +K
Sbjct: 608 EEDGGKSRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVIRDRIRSIK 667

Query: 795 SSPYF 799
            S  F
Sbjct: 668 ESLLF 672


>gi|54293037|ref|YP_125452.1| excinuclease ABC subunit B [Legionella pneumophila str. Lens]
 gi|81822471|sp|Q5X0E6|UVRB_LEGPL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|53752869|emb|CAH14304.1| excinuclease ABC subunit B [Legionella pneumophila str. Lens]
          Length = 663

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/659 (55%), Positives = 478/659 (72%), Gaps = 1/659 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ ++Y P+GDQP AIA L+ G+ S    Q LLGVTGSGKTFT+A VI+AM+RP ++M
Sbjct: 4   LFKIYSNYQPAGDQPTAIASLIDGLESGLAKQTLLGVTGSGKTFTIAHVIQAMKRPTLIM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR
Sbjct: 64  APNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+V++VS IYG+G  +SY +M++ L  G+  +Q+++L  L + QY R
Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMLLHLSRGEQSDQRKILKRLAEMQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++ + RG FRV GD I+IFP+  E  A R+ +F ++++ I+ F PLTG+ ++ +  + I
Sbjct: 184 TNLSLERGQFRVNGDVIDIFPADSEKEAIRIELFDDEVDNIARFDPLTGEILQRLPRVTI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  +HYVTPR  +   ++ +K EL+ RL EL  + +L+EAQRLEQR  +D+EM+   G C
Sbjct: 244 FPKTHYVTPRERILETVEKVKVELQERLAELNAQNKLVEAQRLEQRTCFDIEMMLELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+ R  GE PPTLF+Y+P ++LL +DESHVT+PQI GMYRGD  RK TL  
Sbjct: 304 SGIENYSRYLSNREAGEAPPTLFDYLPPEALLIIDESHVTVPQIGGMYRGDRARKETLVN 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+    P TI +SATPG +E E     + EQ++RPTGL+DP V
Sbjct: 364 YGFRLPSALDNRPLRFEEFEERSPQTIYISATPGPYEQEHSDN-VAEQVVRPTGLIDPEV 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR  +TQV+D+  EI     QG RIL+T LTKRMAEDLTEYL E  I+VRY+HS+V T+
Sbjct: 423 EIRPVKTQVDDLMSEIRQVIAQGSRILVTTLTKRMAEDLTEYLSEHGIKVRYLHSDVDTV 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 483 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  + ILYAD IT S+Q A+ ET RRREKQ   N KH I P+ + + + ++++   + 
Sbjct: 543 RNVKGRAILYADNITGSMQRALTETERRREKQKAFNLKHGITPKGINKSVEDILEGAYIG 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
              T       +    S ++    + +L KQM+  A N+ FE AA+IRDE   LK    
Sbjct: 603 KRKTMVAEQAPRYTHWSPQELAKQINALEKQMYAHAQNMEFELAAKIRDEYLLLKEQLM 661


>gi|162448934|ref|YP_001611301.1| excinuclease ABC subunit B [Sorangium cellulosum 'So ce 56']
 gi|161159516|emb|CAN90821.1| excinuclease ABC, B subunit [Sorangium cellulosum 'So ce 56']
          Length = 719

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/661 (54%), Positives = 472/661 (71%), Gaps = 2/661 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F++ +++ P GDQP A+ ++       E  Q+LLGVTGSGKTFT AKVIE +Q+P ++
Sbjct: 3   THFELVSEFKPCGDQPRALQEICSAFEQGEAFQVLLGVTGSGKTFTAAKVIEKLQKPTLI 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E +  FP+NAV YFVSYYDYYQPEAYVP +DTYIEK++ IN+ IDRM
Sbjct: 63  MAPNKTLAAQLYGEMRELFPNNAVHYFVSYYDYYQPEAYVPTSDTYIEKDAIINDAIDRM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R D I+V+SVSCIYGIGS ESY  ++++L+ G  + + ELL  LV  QY 
Sbjct: 123 RHAATHALLSRPDVIIVASVSCIYGIGSAESYHGLLIKLERGTEIRRDELLRRLVDIQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RGTFRV GD +EIFP++ E +A RV  FG++IE I E  P+ G+ +  ++   
Sbjct: 183 RNDVDFHRGTFRVRGDVVEIFPAYEEALAIRVEFFGDEIEAIKEVDPVRGKVVGQLDRYA 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++  SHYVT +  L  A++ I+EEL+ R+   ++  R LE QR+EQR  YDLEMLE  G 
Sbjct: 243 VFPGSHYVTEQQQLRLAIQAIREELRERIDFYDRAVRFLEKQRIEQRTMYDLEMLEQMGF 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR  GEPPPTL +Y P+D LL +DESH T+PQ+  M+RGD  RK TL 
Sbjct: 303 CNGIENYSRHLSGRKAGEPPPTLIDYFPKDFLLIIDESHQTVPQVGAMFRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+       + VSATPG +EL++  G +VEQIIRPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEQHYAQVLFVSATPGDYELQKSAGSVVEQIIRPTGLIDPQ 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR    QV+D+   I     +G R+L+T LTKRMAEDLTEY  E  IRVRY+HS+V T
Sbjct: 423 IHIRPVSGQVDDLLARIRERVGRGDRVLVTTLTKRMAEDLTEYYTELGIRVRYLHSDVDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L+R+EI+RDLR G+FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 483 LQRVEILRDLRRGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSPRSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV+ +V++YAD IT++++ A+DET RRR  Q  +NK+H I P +VK+ I+++      
Sbjct: 543 ARNVHGEVVMYADRITEAMKRAMDETNRRRAIQEAYNKEHGITPATVKKAILDLSPTSGT 602

Query: 739 EDAATTNISIDAQQLSLSKK--KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            D               ++        + +LR++M  AA+NL FE+AAR+RD++++LK+ 
Sbjct: 603 RDYYAVPKGPAKPAAEAARAAVDLVDQIDALRQEMFAAAENLEFEKAARLRDQLRQLKAQ 662

Query: 797 P 797
            
Sbjct: 663 Q 663


>gi|307608818|emb|CBW98210.1| excinuclease ABC subunit B [Legionella pneumophila 130b]
          Length = 663

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/659 (55%), Positives = 478/659 (72%), Gaps = 1/659 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ ++Y P+GDQP AIA L+ G+ S    Q LLGVTGSGKTFT+A VI+AM+RP ++M
Sbjct: 4   LFKIYSNYQPAGDQPTAIASLIDGLESGLAKQTLLGVTGSGKTFTIAHVIQAMKRPTLIM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR
Sbjct: 64  APNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+V++VS IYG+G  +SY +M++ L  G+  +Q+++L  L + QY R
Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMLLHLSRGEQSDQRKILKRLAEMQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++ + RG FRV GD I+IFP+  E  A R+ +F ++++ I+ F PLTG+ ++ +  + I
Sbjct: 184 TNLSLERGQFRVHGDVIDIFPADSEKEAIRIELFDDEVDNIARFDPLTGEILQRLPRVTI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  +HYVTPR  +   ++ +K EL+ RL EL  + +L+EAQRLEQR  +D+EM+   G C
Sbjct: 244 FPKTHYVTPRERILETVEKVKVELQERLAELNAQNKLVEAQRLEQRTCFDIEMMLELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+ R  GE PPTLF+Y+P ++LL +DESHVT+PQI GMYRGD  RK TL  
Sbjct: 304 SGIENYSRYLSNREAGEAPPTLFDYLPPEALLIIDESHVTVPQIGGMYRGDRARKETLVN 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+    P TI +SATPG +E E     + EQ++RPTGL+DP V
Sbjct: 364 YGFRLPSALDNRPLRFEEFEERSPQTIYISATPGPYEQEHSDN-VAEQVVRPTGLIDPEV 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR  +TQV+D+  EI     QG RIL+T LTKRMAEDLTEYL E  I+VRY+HS+V T+
Sbjct: 423 EIRPVKTQVDDLMSEIRQVIAQGSRILVTTLTKRMAEDLTEYLSEHGIKVRYLHSDVDTV 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 483 ERIEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  + ILYAD IT S+Q A+ ET RRREKQ   N KH I P+ + + + ++++   + 
Sbjct: 543 RNVKGRAILYADNITGSMQRALTETERRREKQKAFNLKHGITPKGINKSVEDILEGAYIG 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
              T       +    S ++    + +L KQM+  A N+ FE AA+IRDE   LK    
Sbjct: 603 KRKTMVAEQAPRYTHWSPQELAKQINALEKQMYAHAQNMEFELAAKIRDEYLLLKEQLM 661


>gi|260575335|ref|ZP_05843335.1| excinuclease ABC, B subunit [Rhodobacter sp. SW2]
 gi|259022595|gb|EEW25891.1| excinuclease ABC, B subunit [Rhodobacter sp. SW2]
          Length = 726

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/662 (63%), Positives = 518/662 (78%), Gaps = 1/662 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +    F + + + P+GDQP AIA+L  GI + E  Q+LLG TG+GKTFTMAKVIEA Q
Sbjct: 20  KLEGGRRFVLASPFQPAGDQPTAIAELTAGIDAGEHDQVLLGATGTGKTFTMAKVIEATQ 79

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPAI++APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV R+DTYIEKES INE
Sbjct: 80  RPAIILAPNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVARSDTYIEKESQINE 139

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           QIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+YS M   L +G   + + ++S LV
Sbjct: 140 QIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYSAMTQDLIVGQPYDLRGIMSELV 199

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
            Q ++R D    RG+FRV GDS+E++P+HLED AWR S FG+ +E I+EF PLTG K  +
Sbjct: 200 AQAFRRNDQAFQRGSFRVRGDSLEVWPAHLEDRAWRFSFFGDQLEAITEFDPLTGAKTDS 259

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            + I+IYANSHYVTPRPT+  A+  IK+EL+  L  +   G+LLEAQRLEQR ++DLEML
Sbjct: 260 FKQIRIYANSHYVTPRPTMQQAILGIKKELRQTLDLMVLNGKLLEAQRLEQRTSFDLEML 319

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           E TG C  IENYSRYLTGR PGEPPPTLFE+IP+++++F DESHV++PQI GMY+GD+ R
Sbjct: 320 EATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSVPQIGGMYKGDYRR 379

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TLAE+GFRLPSCMDNRPL+FEEW+ +RP TI VSATP +WELEQ  G   EQ+IRPTG
Sbjct: 380 KFTLAEHGFRLPSCMDNRPLKFEEWDAMRPRTIFVSATPAAWELEQSGGTFAEQVIRPTG 439

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP +EIR    QV+D+ DEI   A  GLR+L+T LTKRMAEDLTEY +E+ IR+RYMH
Sbjct: 440 LLDPVIEIRPVEMQVDDLLDEIRKVALLGLRVLVTTLTKRMAEDLTEYFHEQGIRIRYMH 499

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ T+ERIEI+RDLRLG FDVLVGINLLREGLDIPECGLVAILDADKEGFLRS+TSLIQ
Sbjct: 500 SDIDTIERIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQ 559

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAARN + + I+YAD IT S++ AI ET RRR+KQ+ +N  H+I P ++++ + +V+
Sbjct: 560 TIGRAARNSDGRAIMYADRITGSMERAIGETNRRRDKQIAYNTAHDITPTTIRKNVEDVL 619

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             +   D   + ++    +  +      AHL SLR  M  AA+NL FEEAAR+RDE+KRL
Sbjct: 620 AGLWQGDTDQSRVTAKVDK-PMVGANLAAHLDSLRLAMRKAAENLEFEEAARLRDEVKRL 678

Query: 794 KS 795
           ++
Sbjct: 679 QA 680


>gi|261363659|ref|ZP_05976542.1| excinuclease ABC subunit B [Neisseria mucosa ATCC 25996]
 gi|288568201|gb|EFC89761.1| excinuclease ABC subunit B [Neisseria mucosa ATCC 25996]
          Length = 672

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/664 (53%), Positives = 481/664 (72%), Gaps = 5/664 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDSGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIK 667

Query: 795 SSPY 798
            + +
Sbjct: 668 ENLF 671


>gi|227485957|ref|ZP_03916273.1| excision endonuclease subunit B [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236002|gb|EEI86017.1| excision endonuclease subunit B [Anaerococcus lactolyticus ATCC
           51172]
          Length = 651

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/657 (53%), Positives = 473/657 (71%), Gaps = 8/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++DY P GDQP AI +L +GI + +K Q+L GVTGSGKTFTMA +I+ +QRP +V+A
Sbjct: 3   FKLKSDYAPKGDQPEAIKKLSEGILAGKKHQILRGVTGSGKTFTMANIIQNVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL++EFK FFP NAVEYFVSYYDYYQPEAYV  TDTYI K+SSIN++ID+MRH
Sbjct: 63  HNKTLAYQLFTEFKEFFPDNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G    Y +++V L+ G  +  +E++  L+  QY R 
Sbjct: 123 SATMALFERRDVIIVASVSCIYGLGDPIEYKKLVVSLRPGQEISPEEVMKKLIDVQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FR  GD ++I+P+  +  A R+  FG++I++ISEF PLTG+ I  +    IY
Sbjct: 183 DVEFERGSFRARGDVLDIYPAGFDQKAIRIEFFGDEIDQISEFDPLTGKVISKITHAYIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T       A+  I++EL+ R+ E E E +LLEAQR+EQR  YD+EML+  G C 
Sbjct: 243 PASHYATTSEKTEKAIISIEKELEERIKEFESENKLLEAQRIEQRTKYDIEMLKEIGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L+ R  G  P TL +Y P+D +L VDESHV+IPQ+ GMY GD  RK  L ++
Sbjct: 303 GIENYSAHLSQRPRGSRPYTLIDYFPKDFVLMVDESHVSIPQVGGMYEGDRSRKQNLVDF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+  L   T+ VSATPG +E+++  G +VEQIIRPTGL+DP VE
Sbjct: 363 GFRLPSALDNRPLKFDEFEKLINQTVYVSATPGPYEMKKTHGELVEQIIRPTGLLDPLVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ +E++   ++G R+L+T LTK+MAEDLT+YL E++I+VRY+HS++KT+E
Sbjct: 423 VRPTANQIDDLIEEVHKTIEKGERVLVTTLTKKMAEDLTDYLMEQSIKVRYLHSDIKTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLGKFDVLVGINLLREGLDIPE  L+ ILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RSEIIRDLRLGKFDVLVGINLLREGLDIPEVSLITILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+Y DTIT S+Q AIDET RRR+ Q + NKKH I P ++K+ I E+I      +
Sbjct: 543 NSEGHVIMYGDTITGSMQRAIDETERRRKIQEDFNKKHGITPTTIKKNIGEIIQITKKAE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                                  L ++  +M+ AA+ L+FE AAR+RD+IK+++ + 
Sbjct: 603 EEEIEEFKRE--------DIATILINMESEMYKAAEELDFERAARLRDQIKKMRENF 651


>gi|67459452|ref|YP_247076.1| excinuclease ABC subunit B [Rickettsia felis URRWXCal2]
 gi|75536134|sp|Q4UKL6|UVRB_RICFE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|67004985|gb|AAY61911.1| Excinuclease ABC subunit B [Rickettsia felis URRWXCal2]
          Length = 661

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/661 (59%), Positives = 494/661 (74%), Gaps = 3/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + ++Y P+GDQP AI +++ G++S+++ Q+LLG+TGSGKTFTMA +IE   RP +
Sbjct: 1   MNNFSIISEYKPAGDQPKAIDEIIAGLNSKKRSQMLLGITGSGKTFTMANIIERTNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MA NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID 
Sbjct: 61  IMAHNKTLAAQIYSEMKSIFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSATRSLLER D IVVSSVSCIYG+GS + Y QM V L+ G S  + +LL+ L+  QY
Sbjct: 121 MRHSATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMTVNLEPGKSYPRDKLLNDLINLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DIG  RG FRV GD+I+IFPSH  D AWR+S FGN++E I EF PLTG+K+  ++  
Sbjct: 181 ERNDIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLAKLDKA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++ NSH+V P+ T+N+A+  I+EEL+ RL  L+ + + LE QRL QR  YDLEML  TG
Sbjct: 241 MVFGNSHFVMPQETVNSAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC+ +ENYSR+ TGRN GEPPPTLFEY+PED+LLFVDESHV++PQI  MY GD  RK  L
Sbjct: 301 SCKGVENYSRFFTGRNAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKEVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEEW   RP T+ VSATPG +ELE+    +VE IIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFELEETGDTVVELIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              I+ A  QVED+  EI     +G R+L+T LTK+MAEDLT YL E   +  Y+HS + 
Sbjct: 421 ECIIKPATNQVEDLIGEIQATIAKGFRVLVTTLTKKMAEDLTAYLQELKYKTSYLHSNIH 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI+RDLR G  D+LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 481 TLERIEILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VILYAD +TKSI  A+ ET+RRR+ Q E+N+KH I P+++   I  + +   
Sbjct: 541 AARNSEGRVILYADKMTKSIDKAMSETSRRRQIQQEYNEKHGIIPKTINRAIHALAE--- 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           LE   +      A  L  +  K KAH++ L+K M  AA NL FE+AA++RD++K L+ + 
Sbjct: 598 LEKVDSKLDKKQAHTLFDNPAKLKAHIEKLKKDMLKAASNLEFEQAAKLRDQLKTLEEAA 657

Query: 798 Y 798
            
Sbjct: 658 L 658


>gi|229181421|ref|ZP_04308749.1| UvrABC system protein B [Bacillus cereus 172560W]
 gi|228601996|gb|EEK59489.1| UvrABC system protein B [Bacillus cereus 172560W]
          Length = 658

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|229193407|ref|ZP_04320355.1| UvrABC system protein B [Bacillus cereus ATCC 10876]
 gi|228590062|gb|EEK47933.1| UvrABC system protein B [Bacillus cereus ATCC 10876]
          Length = 658

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETETYEAAPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|226944118|ref|YP_002799191.1| excinuclease ABC subunit B [Azotobacter vinelandii DJ]
 gi|226719045|gb|ACO78216.1| excinuclease ABC, B subunit [Azotobacter vinelandii DJ]
          Length = 669

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/668 (55%), Positives = 487/668 (72%), Gaps = 8/668 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +
Sbjct: 1   MSEFQLVTRFQPAGDQPDAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIARVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++L+ER D I+V++VS IYG+G   SY +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALMERPDAIIVATVSSIYGLGDPASYLKMVLHIDRGDRLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I++FP+  E  A R+ +F +++E ++ F PLTG+ IR +   
Sbjct: 181 TRNDLDFARATFRVRGDVIDVFPAESELEAIRIELFDDEVESLAAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A++ IK ELK RL  L + G+L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLLEAVEQIKAELKERLEHLRERGKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR PG PPPTL++Y+P+++L+ +DESHVT+PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRAPGLPPPTLYDYLPDNALMVIDESHVTVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG +E E   G ++EQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWERIAPQTIFVSATPGPYEAEHA-GRVIEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R A TQV+D+  EI        R+L+T LTKRMAEDLT+YL + ++RVRY+HS++ 
Sbjct: 420 ELEVRPALTQVDDLLSEIRKRVAVEERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLR G FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRSGAFDVLVGINLLREGLDMPEVSLVTILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N K ILYAD+IT S++ AIDET RRR KQ+  N+ H I P+ VK+ I ++++  +
Sbjct: 540 AARNLNGKAILYADSITGSMRRAIDETERRRAKQIAFNETHGIVPRGVKKDIQDILEGAV 599

Query: 738 LEDAATTNISIDAQQLS-------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           +  A        A + S        S  +    ++ L ++M+  A +L FE AAR+RDEI
Sbjct: 600 VPGARGRKRVARAAEESGQYAAELRSPSEIDKRIRQLEEKMYALARDLEFEAAARLRDEI 659

Query: 791 KRLKSSPY 798
           + L+    
Sbjct: 660 QALRERRL 667


>gi|313668467|ref|YP_004048751.1| excinuclease ABC subunit B [Neisseria lactamica ST-640]
 gi|313005929|emb|CBN87386.1| excinuclease ABC subunit B [Neisseria lactamica 020-06]
          Length = 675

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/665 (53%), Positives = 481/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ RND I+V++VS IYGIG    Y QM++ +K GD++ Q++++++LV  QY+
Sbjct: 129 RLSATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIAQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIEFFTREQRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPK 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDSGKGRRQGKNKVKVGEIRNEEDAIKEISKLEKAMQQAARDLQFEEAAVLRDRIQNIK 667

Query: 795 SSPYF 799
            S  F
Sbjct: 668 ESMLF 672


>gi|294624228|ref|ZP_06702943.1| excinuclease ABC subunit B [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292601472|gb|EFF45494.1| excinuclease ABC subunit B [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 673

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/669 (54%), Positives = 487/669 (72%), Gaps = 10/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L +G+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +E+ +  G + E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYEVRESAGEVTELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E++   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV+  I ++++    + 
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPIADIMEGARDDA 604

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           A   +                  ++   +    LKSL ++M+  A +L FE AA+IRD+I
Sbjct: 605 AEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGKLKSLEQKMYQHAKDLEFEAAAQIRDQI 664

Query: 791 KRLKSSPYF 799
           ++LK++   
Sbjct: 665 QKLKAASLG 673


>gi|168207435|ref|ZP_02633440.1| excinuclease ABC, B subunit [Clostridium perfringens E str.
           JGS1987]
 gi|170661207|gb|EDT13890.1| excinuclease ABC, B subunit [Clostridium perfringens E str.
           JGS1987]
          Length = 659

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/659 (52%), Positives = 472/659 (71%), Gaps = 2/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++Q+ + P+GDQP AI  L++ I +  + Q LLGVTGSGKTFTMA +IE  Q+P +
Sbjct: 1   MGEFKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID+
Sbjct: 61  ILAHNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  L++ QY
Sbjct: 121 LRHSATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD+++I PS       R+  FG++I+ I EF  LTG  I   + +
Sbjct: 181 ERNDIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I   SH+     TL  +++ I++EL+ RL  L  E ++LEAQRL+QR  YD+EM+   G
Sbjct: 241 SITPASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+  MY GD  RK +L
Sbjct: 301 YCQGIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLP   DNRPL+F E+       + VSATPG +EL+  + ++ EQIIRPTGL+DP
Sbjct: 361 VEFGFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSK-VVAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR  + Q++D+Y EI    Q+G R+L+T LTKRMAEDLT+YL + N++  YMHS++ 
Sbjct: 420 VIEIRPIQGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++IIR+LRLG+ DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+YAD ITKS+  +I ET RRR  Q+E+N++HNI P +V + + ++I+   
Sbjct: 540 AARNSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + +    N   + ++ +      +  ++   ++M  AA NL FE AA +RD IK LK +
Sbjct: 600 VSEEKE-NYESEVKKAAKKDIPIEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDLKEN 657


>gi|154499910|ref|ZP_02037948.1| hypothetical protein BACCAP_03567 [Bacteroides capillosus ATCC
           29799]
 gi|150271508|gb|EDM98765.1| hypothetical protein BACCAP_03567 [Bacteroides capillosus ATCC
           29799]
          Length = 656

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/659 (53%), Positives = 471/659 (71%), Gaps = 4/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI  L  G+    + Q LLGVTGSGKTFTMAK IE +QRP +
Sbjct: 1   MPKFEVVSEYKPAGDQPQAIEALANGVEMGLQEQTLLGVTGSGKTFTMAKTIEKLQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +EFK FFP+N+VEYFVSYYDYYQPEAY+P TDT+IEK+++ N++IDR
Sbjct: 61  VLAHNKTLAAQLCAEFKEFFPNNSVEYFVSYYDYYQPEAYIPHTDTFIEKDAATNDEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT +LLER D IVVSSVSCIYG+G  E +++M+V L++G  +E+  LL  LV+ +Y
Sbjct: 121 LRLSATCALLERRDVIVVSSVSCIYGLGEPEDFAKMMVSLRVGMEMERDVLLKRLVEIRY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   R  FRV GD++EI+P++ +D A RV  FG++I+ ISE   +TG  IR +  +
Sbjct: 181 ERNDIAFERNMFRVRGDTVEIYPAYWKDSAIRVEFFGDEIDRISEVNAVTGTPIRILNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  +HYVTP+  ++ A+  I +EL+ R+   E+E +L+EAQRL+QR+ YD+EM++  G
Sbjct: 241 PIWPATHYVTPKEKMDAAIGEIYKELEERVAFFERENKLVEAQRLKQRVMYDIEMMQELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR + GR  G PP TL +Y P+D L+F+DESHVT+PQ+  MY GD  RK TL
Sbjct: 301 YCSGIENYSRVIEGRPAGTPPHTLLDYFPKDFLMFIDESHVTLPQVRAMYNGDHARKTTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLP   DNRPL+F+E+       I VSATPG +E  +  G +VEQ+IRPTGL+DP
Sbjct: 361 VDYGFRLPCAYDNRPLKFDEFEQRVNQVIYVSATPGEYERTRS-GQVVEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    Q++D+  EIN   ++  R+L+T LTKRMAEDLT YL    I+VRYMH ++ 
Sbjct: 420 RIEVRPVEGQIDDLIGEINARTERKERVLVTTLTKRMAEDLTAYLKNAGIKVRYMHHDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERQEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN +  VI+YAD IT S++ AIDET RRREKQ   NK H I P++V + +  +I+   
Sbjct: 540 AARNADGLVIMYADKITPSMRAAIDETERRREKQDAFNKAHGIVPKTVVKSVRNLIE--- 596

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           L          D  Q  ++K++    +  L K+M  A+  L FE AA +RD+I +L+  
Sbjct: 597 LSGEVEETKKFDFNQKQMTKQQRLEAIAKLEKEMKEASKMLEFEYAAILRDKIIKLRGE 655


>gi|300312456|ref|YP_003776548.1| excinuclease ABC subunit B [Herbaspirillum seropedicae SmR1]
 gi|300075241|gb|ADJ64640.1| excinuclease ABC subunit B (SOS response excision nuclease DNA
           repair ATP-binding) protein [Herbaspirillum seropedicae
           SmR1]
          Length = 693

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/670 (53%), Positives = 477/670 (71%), Gaps = 4/670 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQPAAI +L++G++     Q LLGVTGSGKT+TMA  I  + RPAIV
Sbjct: 22  SPFKLYQVFPPAGDQPAAIDKLVEGVNDGLFYQTLLGVTGSGKTYTMANTIARLGRPAIV 81

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLYSEF+ FFPHNAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I++M
Sbjct: 82  FAPNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQM 141

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R S T+SL+ER D ++V++VS IYGIG+   Y QMI+ L+  D V Q+++++ L++ QY 
Sbjct: 142 RLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTLRAKDKVSQRDVIARLIQMQYT 201

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R ++   RGTFRV GD+I++FP+   ++A R+  F ++I+ +  F PLTG+  + +    
Sbjct: 202 RNEVDFGRGTFRVRGDTIDVFPAEHAELAVRIETFDDEIDSLQLFDPLTGRVRQKIPRFT 261

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYVTPR T+  A++ IKEEL  RL    KE +L+E QRLEQR  +D+EM+   G 
Sbjct: 262 IYPGSHYVTPRSTVLRAIETIKEELAERLEFFRKENKLIEEQRLEQRTRFDIEMMTEIGF 321

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
            + IENYSR+L+G  PG+PPPTL +Y+P+D+++F+DESHV I Q++GMY GD  RK  L 
Sbjct: 322 TKGIENYSRHLSGAKPGDPPPTLVDYLPKDAIMFLDESHVLIGQLNGMYNGDRARKVNLV 381

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL+F+E+      TI VSATP  +E       +VEQ++RPTGLVDP 
Sbjct: 382 DYGFRLPSALDNRPLKFDEFEKKMRQTIFVSATPADYENTHADQ-VVEQVVRPTGLVDPI 440

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R A TQV+D+  EIN    +  R+L+T LTKRMAE LTE+L +  I+VRY+HS++ T
Sbjct: 441 IAVRPATTQVDDLMQEINDRIAKDERVLVTTLTKRMAEQLTEFLSDNGIKVRYLHSDIDT 500

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDV+VGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 501 VERVEIIRDLRLGTFDVVVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 560

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N   ILY D +T S+  AI ET RRR KQL  N  + I P  +K++I E+ID +  
Sbjct: 561 ARNLNGMAILYGDVVTDSMHKAIGETERRRAKQLAFNAANGIVPTGIKKEIRELIDGVFN 620

Query: 739 EDAATTNISIDAQQ---LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              A T + +  ++    S+S+K+    +K L KQM   A NL FE+AA  RD++  LK 
Sbjct: 621 PAQARTELLVAEEKKNYESMSEKQISKEIKRLEKQMQEHAKNLEFEKAAAARDQLHLLKQ 680

Query: 796 SPYFQGLDDS 805
             +     D+
Sbjct: 681 QLFGAPGSDT 690


>gi|312883745|ref|ZP_07743465.1| excinuclease ABC subunit B [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368595|gb|EFP96127.1| excinuclease ABC subunit B [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 676

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/671 (53%), Positives = 480/671 (71%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + ++Y P+GDQP AI QLL+G+ S    Q LLGVTGSGKTFT+A VI + QRPAI+
Sbjct: 3   KVFDLVSEYSPAGDQPQAIEQLLEGLESGLAHQTLLGVTGSGKTFTLANVIASAQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  ESY +M++ ++ GD + Q+E+L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPESYLKMMLHIRRGDYINQREILLRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RG FRV G+ I+IFP+  E  A R+ MF ++++ IS F PLTG    R++   
Sbjct: 183 RNDVAFERGQFRVRGEVIDIFPAESEQDAVRIEMFDDEVDCISIFDPLTGVVKQRDLARY 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK EL  R   L    +LLE QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPRDRILDAIENIKVELSARRQYLLDNNKLLEEQRISQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRLEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+F+E+  L P TI VSATPG++ELE+    I +Q++RPTGL+DP
Sbjct: 363 VEFGFRLPSALDNRPLKFDEFESLAPQTIFVSATPGNYELEKSGSDIADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI L +++  R+L+T LTKRMAEDLTEYL E +++VRY+HS++ 
Sbjct: 423 EIEVRPVSTQVDDLLSEIRLRSKKDERVLVTTLTKRMAEDLTEYLNEHDVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--- 734
           AARN++ K ILYAD  T S+  AI ET RRR KQ  +N++  I P+++K  I ++++   
Sbjct: 543 AARNISGKAILYADRHTNSMNRAIGETNRRRLKQQAYNEEIGIVPRALKRNIKDIMELGD 602

Query: 735 ---PILLEDAATTNISIDAQ----QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                   ++    +S  A+      ++S ++ +  +  L  +M+  A +L FE AA  R
Sbjct: 603 MTKSRSQRESKVVPLSQVAEPTVGYQNMSPQQLEKEIAKLETEMYQHAQDLEFELAADKR 662

Query: 788 DEIKRLKSSPY 798
           D+I  L+    
Sbjct: 663 DKIDTLRKQFI 673


>gi|288940113|ref|YP_003442353.1| excinuclease ABC subunit B [Allochromatium vinosum DSM 180]
 gi|288895485|gb|ADC61321.1| excinuclease ABC, B subunit [Allochromatium vinosum DSM 180]
          Length = 672

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/664 (55%), Positives = 488/664 (73%), Gaps = 8/664 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + P+GDQP AI +L++G++  E    LLGVTGSGKTFT+A VI  +QRPA++
Sbjct: 7   PAFELVSPFAPAGDQPEAIRRLVEGLNDGEAGLTLLGVTGSGKTFTIANVIAQVQRPALI 66

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E + FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+++INE I++M
Sbjct: 67  LAPNKTLAAQLYGEMREFFPRNAVEYFVSYYDYYQPEAYVPATDTYIEKDAAINEHIEQM 126

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V++VS IYG+G  E+Y +M++ LK G+ ++Q+ +L  L + QY 
Sbjct: 127 RLSATKALLERRDVIIVATVSSIYGLGDPEAYLKMVLILKRGERIDQRAILRRLAELQYT 186

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +I + RG +RV GD I+I P+  +D A R+++F ++IE +S F PLTG+  R V    
Sbjct: 187 RNEIELSRGAYRVRGDVIDIHPAESDDEALRIALFDDEIETLSLFDPLTGEVRRQVSRYT 246

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++  +HY TPR T+  A+  IK EL+ RL  L    +L+EAQRLEQR  +DLEM+   G 
Sbjct: 247 VFPKTHYATPRETILKAIDLIKPELRERLDWLRANDKLVEAQRLEQRTLFDLEMMLEVGY 306

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           CQ IENYSRYL+GR PGEPPPTL++Y+P D++L +DESHVT+PQ+ GMYRGD  RK  L 
Sbjct: 307 CQGIENYSRYLSGRQPGEPPPTLYDYLPPDAILVIDESHVTVPQLGGMYRGDRSRKENLV 366

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            YGFRLPS +DNRPL+FEE+   +P TI VSATP ++E+E   G ++EQ++RPTGLVDP 
Sbjct: 367 NYGFRLPSALDNRPLQFEEFQSRQPQTIYVSATPRAFEIEHS-GAVIEQVVRPTGLVDPE 425

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R A +QV+D+  EI        R+L+T LTKRMAEDLTEYL E  ++VRY+HS++ T
Sbjct: 426 VEVRPALSQVDDLLSEIGPRVAADERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDIDT 485

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 486 VERVEIIRDLRLGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTDSLIQTIGRA 545

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN N K ILYAD IT S+Q AI+E+ RRR KQ+  N+   I PQ++++ + ++++    
Sbjct: 546 ARNANGKAILYADRITGSMQRAIEESERRRAKQIAANEAQGITPQTIRKAVADILEAHTP 605

Query: 735 --PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             P+   + A     + A+   L+ ++    LK+L KQM+  A NL FEEAA IRD+I+ 
Sbjct: 606 GAPMKAREYARVAEQV-AEYGRLTPQQMAKRLKTLEKQMYQHAKNLEFEEAAAIRDQIRE 664

Query: 793 LKSS 796
           L++ 
Sbjct: 665 LQAR 668


>gi|228936450|ref|ZP_04099248.1| UvrABC system protein B [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823282|gb|EEM69116.1| UvrABC system protein B [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 658

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|225077183|ref|ZP_03720382.1| hypothetical protein NEIFLAOT_02238 [Neisseria flavescens
           NRL30031/H210]
 gi|224951474|gb|EEG32683.1| hypothetical protein NEIFLAOT_02238 [Neisseria flavescens
           NRL30031/H210]
          Length = 675

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/665 (53%), Positives = 480/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLYQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLCACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+           ++ +    +++     +  L K M  AA +L FEEAA IRD I+ +K
Sbjct: 608 EEDGGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVIRDRIRGIK 667

Query: 795 SSPYF 799
            +  F
Sbjct: 668 ENLLF 672


>gi|303327019|ref|ZP_07357461.1| excinuclease ABC subunit B [Desulfovibrio sp. 3_1_syn3]
 gi|302863007|gb|EFL85939.1| excinuclease ABC subunit B [Desulfovibrio sp. 3_1_syn3]
          Length = 679

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/672 (53%), Positives = 471/672 (70%), Gaps = 9/672 (1%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K  T F +QT Y P GDQP AI  L   I +    Q+LLGVTGSGKTFTMA VI    RP
Sbjct: 4   KSTTPFSLQTGYTPMGDQPEAITALTDNIRAGVPAQVLLGVTGSGKTFTMANVIARCNRP 63

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
           A+V+APNK LAAQLY+EF+  FP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I
Sbjct: 64  ALVLAPNKTLAAQLYNEFRELFPRNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNI 123

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RH+AT +LL R D ++V+SVSCIYG+GS E Y++M++ +++G  +   +L++ LV+ 
Sbjct: 124 DKLRHAATHALLTRRDVVIVASVSCIYGLGSPEYYAKMVIPVEVGQRLPMDDLITRLVEV 183

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y+R D    RGTFRV GD++EI P++  + A R+  FG+DI+ + E  PLTG+ +  V 
Sbjct: 184 HYERNDYDFHRGTFRVRGDALEIIPAYHHERALRLEFFGDDIDAMREIDPLTGEVLAEVG 243

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              +Y  SH+V+ +  L  A   I++EL  RL   ++ G+L+EAQRLEQR   DLEM+E 
Sbjct: 244 KTVLYPASHFVSAQDNLKRAAGDIRDELTARLTYFKEHGKLVEAQRLEQRTQLDLEMIEE 303

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENY+R+L GR  GEPP  L  Y P D LLFVDESH+TIPQ+ GM++GD  RK 
Sbjct: 304 LGYCNGIENYTRHLDGRKTGEPPSCLLNYFPRDFLLFVDESHITIPQVGGMFKGDRSRKQ 363

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL EYGFRLPS +DNRPL+F+E+  L    + VSATPG +E++Q QGI+ EQIIRPTGLV
Sbjct: 364 TLVEYGFRLPSALDNRPLQFDEFTSLLNQVVYVSATPGRYEMDQAQGIVAEQIIRPTGLV 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VEIR  + Q+ED+  E      +G R+L+T LTKRMAEDLTEY     ++ RY+HS+
Sbjct: 424 DPEVEIRPVKGQMEDLLSECRARVTRGERVLVTTLTKRMAEDLTEYCCNMGVKARYLHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           ++TLER++IIR LR+G+FDVLVGINLLREGLDIPE  LV ILDADKEGFLRS  SLIQT 
Sbjct: 484 IETLERLQIIRALRMGEFDVLVGINLLREGLDIPEVSLVCILDADKEGFLRSTGSLIQTF 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN   +VILYAD +T S++ A+DET RRR KQ  +N++H+I P+S  + +   +D 
Sbjct: 544 GRAARNAQGRVILYADKVTASMKAAMDETGRRRAKQTTYNEEHHITPRSTTKSLESPLDT 603

Query: 736 ILLEDAAT---------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           + +++ A             ++ A    L+ +   A +  L K+M  AA +L FE+AA +
Sbjct: 604 LYVDNDAAKGRGKGRGNGKANVKADAAPLTAEDTAALVLKLEKEMRQAARDLEFEQAAEL 663

Query: 787 RDEIKRLKSSPY 798
           RD I+ L++   
Sbjct: 664 RDRIRALRARLI 675


>gi|225023471|ref|ZP_03712663.1| hypothetical protein EIKCOROL_00329 [Eikenella corrodens ATCC
           23834]
 gi|224943820|gb|EEG25029.1| hypothetical protein EIKCOROL_00329 [Eikenella corrodens ATCC
           23834]
          Length = 675

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/665 (53%), Positives = 479/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVVRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPSNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSLS----KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+           ++ +S    ++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDGGKGRLKGKNKVKVSEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIK 667

Query: 795 SSPYF 799
            +  F
Sbjct: 668 ENLLF 672


>gi|160899435|ref|YP_001565017.1| excinuclease ABC subunit B [Delftia acidovorans SPH-1]
 gi|160365019|gb|ABX36632.1| excinuclease ABC, B subunit [Delftia acidovorans SPH-1]
          Length = 712

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/701 (51%), Positives = 493/701 (70%), Gaps = 12/701 (1%)

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDI-----TFFQMQTDYHPSGDQPAAIAQLLKGI 164
           +     LL+   +     S      S        + F++   Y P+GDQPAAI +L++GI
Sbjct: 6   LAGRYSLLRTHVMHEVSDSSPAPEASGQFVHFADSPFELFQPYPPAGDQPAAIEKLVEGI 65

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
              E  Q LLGVTGSGKTFTMA VI  + RPAIV APNK LAAQLYSEF+ FFP N+VEY
Sbjct: 66  QDGESFQTLLGVTGSGKTFTMANVIARLGRPAIVFAPNKTLAAQLYSEFREFFPKNSVEY 125

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
           FVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR S T+SL+ER D ++V++VS IYGI
Sbjct: 126 FVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGI 185

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
           G  ESY +MI+ L+ GD + Q+++++ L++ QY+R D    RG FRV GD+I++FP+   
Sbjct: 186 GEPESYHRMIMTLRTGDRINQRDVIAQLIRMQYQRNDQDFSRGKFRVRGDTIDVFPAEHS 245

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           ++A R+ +F +++E +  F PLTG+  +++    +Y +SHYVTPR  +  A++ IK EL 
Sbjct: 246 ELAIRIELFDDEVESLQLFDPLTGRVRQSIPRFTVYPSSHYVTPRDKVLAAVETIKLELA 305

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            RL +L  +G+L+EAQRLEQR  +DLEML   G C+ IENY+R+L+G  PGEPP TL +Y
Sbjct: 306 ERLKQLVGDGKLVEAQRLEQRTRFDLEMLTEVGHCKGIENYTRHLSGAAPGEPPSTLTDY 365

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +P D+L+F+DESH  I Q++ MY GD  RK TL EYGFRLPS +DNRPL+FEE+      
Sbjct: 366 LPGDALMFLDESHQMIGQLNAMYSGDRSRKTTLVEYGFRLPSALDNRPLKFEEFEQRMRQ 425

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            I VSATP  +E     G +V+Q++RPTGL+DP +E+R A  QV+DV  EI L  ++  R
Sbjct: 426 VIFVSATPADYEKTHS-GQVVDQVVRPTGLIDPEIEVRPATNQVDDVLQEIRLRVERTER 484

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+T LTKRMAE LT+YL E  ++VRY+HS+V+T+ER+EIIRDLRLG FDVLVGINLLRE
Sbjct: 485 VLITTLTKRMAEQLTDYLSENGVKVRYLHSDVETVERVEIIRDLRLGVFDVLVGINLLRE 544

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLDIPE  LVAILDADKEGFLR++ SLIQTIGRAARN++ K ILYAD +T+S++ AI ET
Sbjct: 545 GLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNLHGKAILYADRVTESMKKAIGET 604

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS------LSKK 758
            RRR KQ+  N+++ I P+ + +++ ++ID +  E +      + A QL       +S+K
Sbjct: 605 ERRRAKQISFNEENGIEPKQIVKRVKDLIDGVYSEKSGKEAERLQANQLERARVEDMSEK 664

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
                +K L KQM   A +L FE+AAR+RD++  LK   + 
Sbjct: 665 DVAKEIKRLEKQMLEHARSLEFEQAARVRDQLALLKEQLFG 705


>gi|228948883|ref|ZP_04111158.1| UvrABC system protein B [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228810845|gb|EEM57191.1| UvrABC system protein B [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 658

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRRAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|229105768|ref|ZP_04236397.1| UvrABC system protein B [Bacillus cereus Rock3-28]
 gi|229118657|ref|ZP_04248009.1| UvrABC system protein B [Bacillus cereus Rock1-3]
 gi|228664849|gb|EEL20339.1| UvrABC system protein B [Bacillus cereus Rock1-3]
 gi|228677657|gb|EEL31905.1| UvrABC system protein B [Bacillus cereus Rock3-28]
          Length = 658

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/656 (53%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++G++S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGLNSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKIEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|291562531|emb|CBL41347.1| excinuclease ABC, B subunit [butyrate-producing bacterium SS3/4]
          Length = 663

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/658 (52%), Positives = 471/658 (71%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI QL+KG     + + LLGVTGSGKTFTMA VI+ + +P +
Sbjct: 1   MDHFELVSEYQPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIQQLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLYSE K FFP+NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID+
Sbjct: 61  VIAHNKTLAAQLYSEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ERND I+V+SVSCIYG+GS   Y  M++ L+ G   ++ E++  L+  QY
Sbjct: 121 LRHSATAALSERNDVIIVASVSCIYGLGSPIDYKNMVISLRPGMEKDRDEVIHKLIDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FRV GD +E+FP++    A+R+  FG++++ I E   LTG+    +E +
Sbjct: 181 TRNEMDFKRGSFRVRGDVLEVFPAYSGSEAYRIEFFGDEVDRIMEIEALTGEVKAQLEHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV P+  +  A + I  E+K ++   + E +LLEAQR+ +R  +D+EM+  TG
Sbjct: 241 AIFPASHYVVPKEKMMRATENILAEMKEQVTFFKSEDKLLEAQRIAERTNFDVEMMRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L G  PG+PP TL +Y P+D L+ VDESH+T+PQ+ GMY GD  RK TL
Sbjct: 301 FCSGIENYSRHLVGSAPGQPPCTLLDYFPDDFLIIVDESHITLPQVRGMYFGDRSRKKTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL FEE+       + VSATP ++E +  + +  EQIIRPTGL+DP
Sbjct: 361 VDYGFRLPSALDNRPLNFEEFETHINQMMFVSATPSTYEADH-ELLRAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    Q++D+  EIN   ++  +IL+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ 
Sbjct: 420 EISVRPVEGQIDDLVGEINKEVEKHNKILITTLTKRMAEDLTDYIREAGIRVKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERAEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD+IT S++ AIDET RRRE Q ++N++H I PQ++K+ + ++I    
Sbjct: 540 AARNAEGHVIMYADSITDSMRAAIDETNRRREIQQKYNEEHGITPQTIKKAVRDLIAISK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              A+      D +  S+  ++ +   K L K+M  AA  LNFEEAA++RD +K +K 
Sbjct: 600 AASASEEEFRKDPE--SMDARELEKLAKELTKKMRQAAAELNFEEAAKLRDRMKEVKQ 655


>gi|110802378|ref|YP_697624.1| excinuclease ABC subunit B [Clostridium perfringens SM101]
 gi|169344081|ref|ZP_02865067.1| excinuclease ABC, B subunit [Clostridium perfringens C str.
           JGS1495]
 gi|123146341|sp|Q0SW76|UVRB_CLOPS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|110682879|gb|ABG86249.1| excinuclease ABC, B subunit [Clostridium perfringens SM101]
 gi|169297816|gb|EDS79913.1| excinuclease ABC, B subunit [Clostridium perfringens C str.
           JGS1495]
          Length = 659

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/659 (53%), Positives = 471/659 (71%), Gaps = 2/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++Q+ + P+GDQP AI  L++ I +  + Q LLGVTGSGKTFTMA +IE  Q+P +
Sbjct: 1   MGEFKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID+
Sbjct: 61  ILAHNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  L++ QY
Sbjct: 121 LRHSATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD+++I PS       R+  FG++I+ I EF  LTG  I   + +
Sbjct: 181 ERNDIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I   SH+     TL  ++  I++EL+ RL  L  E ++LEAQRL+QR  YD+EM+   G
Sbjct: 241 SITPASHFAASEETLEKSISIIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+  MY GD  RK +L
Sbjct: 301 YCQGIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLP   DNRPL+F E+       + VSATPG +EL+  + I+ EQIIRPTGL+DP
Sbjct: 361 VEFGFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSE-IVAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR  + Q++D+Y EI    Q+G R+L+T LTKRMAEDLT+YL + N++  YMHS++ 
Sbjct: 420 VIEIRPIKGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++IIR+LRLG+ DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+YAD ITKS+  +I ET RRR  Q+E+N++HNI P +V + + ++I+   
Sbjct: 540 AARNSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + +    N   + ++ +      +  ++   ++M  AA NL FE AA +RD IK LK +
Sbjct: 600 VSEEKE-NYESEVKKAAKKDIPIEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDLKEN 657


>gi|325924713|ref|ZP_08186151.1| Excinuclease ABC subunit B [Xanthomonas perforans 91-118]
 gi|325544919|gb|EGD16264.1| Excinuclease ABC subunit B [Xanthomonas perforans 91-118]
          Length = 673

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/669 (54%), Positives = 487/669 (72%), Gaps = 10/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FQLVSPYSPAGDQPAAIDKLVTNFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L +G+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYAQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +E+ +  G + E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYEVRESAGEVTELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E++   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD IT+S+Q AIDET RRREKQ+E+N +H I P+SV+  I ++++    + 
Sbjct: 545 NLRGKAILYADKITRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPIADIMEGARDDA 604

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           A   +                  ++   +    LKSL ++M+  A +L FE AA+IRD+I
Sbjct: 605 AEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGKLKSLEQKMYQHAKDLEFEAAAQIRDQI 664

Query: 791 KRLKSSPYF 799
           ++LK++   
Sbjct: 665 QKLKAASLG 673


>gi|332534083|ref|ZP_08409932.1| excinuclease ABC subunit B [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036520|gb|EGI72988.1| excinuclease ABC subunit B [Pseudoalteromonas haloplanktis ANT/505]
          Length = 664

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/659 (54%), Positives = 473/659 (71%), Gaps = 1/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++ + P+GDQP AI QL +G+ +    Q LLG TG+GKTFTMA +I  + RP I+MA
Sbjct: 5   FQLRSHFKPAGDQPTAIKQLCEGLEAGLAHQTLLGATGTGKTFTMANIINDLNRPTIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYV  +DT+IEK++SINE I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPKNAVEYFVSYYDYYQPEAYVVSSDTFIEKDASINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  +SY +M++ LK+G+ V+Q+++L  L + QY R 
Sbjct: 125 SATKALLERRDTIIVASVSAIYGLGDPKSYMKMMLLLKVGEKVDQRDMLRRLAEIQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGT+RV G+ ++IFP+  +  A RV MF ++IE +S F PLTG   +++    IY
Sbjct: 185 DIDFSRGTYRVRGEVVDIFPAESDTFAVRVEMFDDEIERLSIFDPLTGAVEKHIVRTTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A+  I+EELK R  +L    +L+E QR+ QR  YD+EM+   G C 
Sbjct: 245 PKTHYVTPREKILGAIDKIQEELKDRRAQLLSANKLVEEQRVTQRTQYDMEMMRELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PG+PPPTL +Y+P+D+L+ +DESHVT+ QI  MY+GD  RK  L EY
Sbjct: 305 GIENYSRYLSGRTPGDPPPTLLDYLPDDALMIIDESHVTVSQIGAMYKGDRSRKENLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS MDNRPLRFEE+  + P TI VSATPG +ELE+C G I EQ+IRPTGL+DP +E
Sbjct: 365 GFRMPSAMDNRPLRFEEFEAISPQTIYVSATPGDFELERCVGAIAEQVIRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI  + ++G R+L+T LTKRM+EDLT+YL E  ++VRY+HS++ T+E
Sbjct: 425 VRPVGDQVDDLLSEIYKSVEKGERVLVTTLTKRMSEDLTDYLSEHGVKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  S+IQTIGRAAR
Sbjct: 485 RVEIIRDLRAGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSARSIIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-PILLE 739
           +++ + ILY D ITKS+  A+DET RRRE Q  +N +H I P S+ +KI++ +D      
Sbjct: 545 HLDGRAILYGDKITKSMAKAMDETARRREIQHAYNVEHGIEPHSLAKKILDAMDVGEEAG 604

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
                 +     +  LS K+    +K L  +MH  A +L FE+A  +RDEI  L+    
Sbjct: 605 PKDNLRLIRKDSKKVLSAKEITVQIKQLETKMHAYASDLEFEKAGSVRDEIHELQQQLI 663


>gi|296505583|ref|YP_003667283.1| excinuclease ABC subunit B [Bacillus thuringiensis BMB171]
 gi|296326635|gb|ADH09563.1| excinuclease ABC subunit B [Bacillus thuringiensis BMB171]
          Length = 658

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|255065871|ref|ZP_05317726.1| excinuclease ABC subunit B [Neisseria sicca ATCC 29256]
 gi|255049782|gb|EET45246.1| excinuclease ABC subunit B [Neisseria sicca ATCC 29256]
          Length = 675

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/665 (53%), Positives = 481/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDSGKGRLKSKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIK 667

Query: 795 SSPYF 799
            +  F
Sbjct: 668 ENLLF 672


>gi|256545641|ref|ZP_05472998.1| excinuclease ABC, B subunit [Anaerococcus vaginalis ATCC 51170]
 gi|256398617|gb|EEU12237.1| excinuclease ABC, B subunit [Anaerococcus vaginalis ATCC 51170]
          Length = 659

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/657 (54%), Positives = 480/657 (73%), Gaps = 6/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P GDQP AI +L  GI + +  Q+L GVTGSGKTFTMA +I+ +Q+P +V+A
Sbjct: 6   FILKSDYTPKGDQPDAIKKLACGIKNGKAHQILQGVTGSGKTFTMANIIQEVQKPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL++EFK FFP NAVEYFVSYYDYYQPEAYV  TDTYI K+SSIN++ID++RH
Sbjct: 66  HNKTLAYQLFTEFKEFFPDNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G  E Y ++++ L+ G  +  +E++  L+++Q+ R 
Sbjct: 126 SATMSLFERRDVIIVASVSCIYGLGDPEEYRKLVLSLRPGQEISPEEVMKELIERQFVRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFR  GD ++IFP+  E+ A RV  FG++I+ ISEF  LTG+   ++    IY
Sbjct: 186 DFDFSRGTFRRRGDVLDIFPAGNEEKAIRVEFFGDEIDRISEFDSLTGKVTSHISHGYIY 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T       A+  IKEELK RL+ELE E +L+EAQRLEQR  YD+EMLE  G C 
Sbjct: 246 PASHYATSAEKAAAAITTIKEELKERLVELENENKLVEAQRLEQRTNYDIEMLEEIGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R PG  P TL +Y P+D +LFVDESHV+IPQ+ GMY GD  RK  L ++
Sbjct: 306 GIENYSRHLSQREPGSRPYTLIDYFPDDFMLFVDESHVSIPQVGGMYEGDRSRKQNLVDF 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L   TI VSATPG +E+E+  G ++EQIIRPTGL+DP ++
Sbjct: 366 GFRLPSALDNRPLKFPEFEKLIKQTIYVSATPGPYEMEKTGGKVIEQIIRPTGLLDPLID 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ + I+    +  R+L+T LTKRMAEDLT+YL E  I+V+Y+HS++KT+E
Sbjct: 426 VRPVENQIDDLIENIHQIIDKNERVLVTTLTKRMAEDLTDYLSENGIKVKYLHSDIKTIE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLGKFDVLVGINLLREGLD+PE  L+AILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 486 RSEIIRDLRLGKFDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT+S++ AIDET RRR+ Q E N+KH I P ++K+ I E+I      +
Sbjct: 546 NSKGHVIMYADKITRSMKKAIDETERRRKIQTEFNEKHGITPTTIKKNIAEIIQVTKSTE 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                 +++  +   S+++ +  + +L  +M+ AA+ L+FE+AA+IRD+I ++K   
Sbjct: 606 ------NVEEVKEEFSQEQIENIIINLETEMYKAAEELDFEKAAQIRDQIAKMKREF 656


>gi|168216608|ref|ZP_02642233.1| excinuclease ABC, B subunit [Clostridium perfringens NCTC 8239]
 gi|182381313|gb|EDT78792.1| excinuclease ABC, B subunit [Clostridium perfringens NCTC 8239]
          Length = 659

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/659 (52%), Positives = 472/659 (71%), Gaps = 2/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++Q+ + P+GDQP AI  L++ I +  + Q LLGVTGSGKTFTMA +IE  Q+P +
Sbjct: 1   MGEFKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID+
Sbjct: 61  ILAHNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  L++ QY
Sbjct: 121 LRHSATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD+++I PS       R+  FG++I+ I EF  LTG  I   + +
Sbjct: 181 ERNDIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I   SH+     TL  +++ I++EL+ RL  L  E ++LEAQRL+QR  YD+EM+   G
Sbjct: 241 SITPASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+  MY GD  RK +L
Sbjct: 301 YCQGIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLP   DNRPL+F E+       + VSATPG +EL+  + ++ EQIIRPTGL+DP
Sbjct: 361 VEFGFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSK-VVAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR  + Q++D+Y EI    Q+G R+L+T LTKRMAEDLT+YL + N++  YMHS++ 
Sbjct: 420 VIEIRPIQGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++IIR+LRLG+ DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+YAD ITKS+  +I ET RRR  Q+E+N++HNI P +V + + ++I+   
Sbjct: 540 AARNSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + +    N   + ++ +      +  ++   ++M  AA NL FE AA +RD IK LK +
Sbjct: 600 VSEEKE-NYESEVKKAAKKDIPVEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDLKEN 657


>gi|108807059|ref|YP_650975.1| excinuclease ABC subunit B [Yersinia pestis Antiqua]
 gi|167400431|ref|ZP_02305944.1| UvrABC system, B protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|123072880|sp|Q1C942|UVRB_YERPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|108778972|gb|ABG13030.1| Excinuclease ABC subunit B [Yersinia pestis Antiqua]
 gi|167050380|gb|EDR61788.1| UvrABC system, B protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
          Length = 671

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/664 (54%), Positives = 471/664 (70%), Gaps = 6/664 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT+A VI  + RP +++A
Sbjct: 5   FKLHSVFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGVPDLYLKMMLHLTRGMIIDQRSILRRLSELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ++ A RV +F  ++E +S F PLTGQ    V    +Y
Sbjct: 185 DQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ IK EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+  G I+EQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A    R+L+T LTKRMAEDLT+YL E   +VRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTDYLSEHGAKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           N+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +KI +++       
Sbjct: 545 NLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERRIIPQGLNKKIGDILQLGQPSM 604

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               +   +  ++   Q  SLS K     ++ L  +M+  A NL FE+AA +RD++ +L+
Sbjct: 605 RGKGKGRGSHKMADTTQYQSLSPKALDQKIRELEAKMYTYAQNLEFEQAAELRDQVHQLR 664

Query: 795 SSPY 798
               
Sbjct: 665 QQFI 668


>gi|206970247|ref|ZP_03231200.1| excinuclease ABC, B subunit [Bacillus cereus AH1134]
 gi|206734824|gb|EDZ51993.1| excinuclease ABC, B subunit [Bacillus cereus AH1134]
          Length = 658

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 478/656 (72%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFGEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETETYEAAPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|171463235|ref|YP_001797348.1| excinuclease ABC, B subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192773|gb|ACB43734.1| excinuclease ABC, B subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 718

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/695 (53%), Positives = 487/695 (70%), Gaps = 9/695 (1%)

Query: 114 NPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLL 173
           +PL + G    P +  +  +     + +Q+   + P+GDQP AI  L++GI      Q L
Sbjct: 28  DPLGEAGHDLDPAKFITFPD-----SLYQLYQPFAPAGDQPQAIDALVEGIEDGLTFQTL 82

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           LGVTGSGKTFTMA VI    RPAI+ APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQ
Sbjct: 83  LGVTGSGKTFTMANVIARTGRPAIIFAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQ 142

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
           PEAYVP+ D +IEK+SSINE I++MR SAT+SLLER D ++V++VS IYGIG+   Y  M
Sbjct: 143 PEAYVPQRDLFIEKDSSINEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPGDYHSM 202

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
           ++ L+ GD + Q+++L  L+  QY R +    RG FRV GD+I+IFP+   ++A RV +F
Sbjct: 203 VMTLRPGDKMSQRDILMRLIAMQYDRNETDFKRGVFRVRGDTIDIFPAEHNELAVRVELF 262

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
            + IE +  F PLTG+  + +    +Y +SHYVTPR T+  A++ IK EL+ RL E  K+
Sbjct: 263 DDVIESLQFFDPLTGKIRQKIPQFTVYPSSHYVTPRDTVLKAIETIKTELRTRLDEFVKD 322

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
           G+L+EAQRLEQR  +DLEML   G C+ IENYSR+L+G  PGE PPTL +Y+P D+++F+
Sbjct: 323 GKLVEAQRLEQRTRFDLEMLNELGFCKGIENYSRHLSGAAPGEAPPTLVDYLPNDAVMFL 382

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
           DESHV I Q++ MY GD  RK TL E+GFRLPS MDNRPL+F E+      TI VSATP 
Sbjct: 383 DESHVLIGQLNAMYNGDKSRKHTLVEFGFRLPSAMDNRPLKFAEFETKMRQTIFVSATPA 442

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E    QG +VEQ+ RPTGLVDP +E+  A TQV+D+ D+I+   + G R+L+TVLTKR
Sbjct: 443 DYEGTH-QGQVVEQVARPTGLVDPEIEVLPASTQVDDLLDQIHARVKVGERVLVTVLTKR 501

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAE LT+YL +  ++VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  L
Sbjct: 502 MAEQLTDYLSDNGVKVRYVHSDIDTVERVEILRDLRLGVFDVLVGINLLREGLDIPEVSL 561

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           VAILDADKEGFLRS+ SLIQTIGRAARNV  K ILYAD IT S++ A+ ET RRR KQ+ 
Sbjct: 562 VAILDADKEGFLRSERSLIQTIGRAARNVRGKAILYADRITDSMKRAMGETERRRTKQIA 621

Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID---AQQLSLSKKKGKAHLKSLRKQ 770
            NK H I P+ V+++I ++ID +         + I+   A+   + +K   A +K L KQ
Sbjct: 622 FNKLHGIEPKGVQKRIKDIIDGVYDVKEKRQEMQIEQERARYEDMGEKDLVAEIKRLEKQ 681

Query: 771 MHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           M+  A NL FE+AA  RD + ++K   +     DS
Sbjct: 682 MNAEAKNLEFEKAAGTRDRLTKVKEMAFGARSRDS 716


>gi|331003461|ref|ZP_08326960.1| UvrABC system protein B [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330412507|gb|EGG91896.1| UvrABC system protein B [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 655

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/657 (52%), Positives = 461/657 (70%), Gaps = 4/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI  L+ G     + Q LLG TGSGKTFTMA VI+ +Q+P +++A
Sbjct: 3   FKLHSEFSPTGDQPQAIEALVNGFKEGNQFQTLLGATGSGKTFTMANVIQRLQKPTLIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH
Sbjct: 63  HNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+GS   Y +M+V L+ G   ++ +++  L+  QY R 
Sbjct: 123 SATASLSERKDVIIVASVSCIYGLGSPIDYQEMVVSLRPGMERDRDDVIRKLIDMQYDRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +E+FP+     A R   FG+++E+I E   LTG  +  +    I+
Sbjct: 183 DMDFHRGTFRVRGDVLEVFPAASTSTALRFEFFGDEVEKILEIDTLTGNILAELAHAVIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A ++I EE   R+   + E +L+EAQR+++R  +D+EM+  TG C 
Sbjct: 243 PASHYVVAPEKMKIATEHILEECDERVKFFKSEDKLIEAQRIDERTHFDVEMMRETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PGEPP TL +Y  +D L+ VDESH+TIPQ+ GMY GD  RK TL  Y
Sbjct: 303 GIENYSRHLTGSAPGEPPYTLIDYFKDDFLIIVDESHITIPQVRGMYAGDRSRKTTLVNY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATP  +E +  + +  EQIIRPTGL+DPP+ 
Sbjct: 363 GFRLPSALDNRPLEFSEFESKIDQMLFVSATPSVYENDH-EMLRTEQIIRPTGLLDPPIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N   ++  +IL+T LTKRMAEDLTEY+ E  IRVRY+HS++ TLE
Sbjct: 422 VRPVEGQIDDLISEVNKEIEKKNKILITTLTKRMAEDLTEYMKEVGIRVRYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL KFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RAEIIRDMRLDKFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD +T S++ AIDET RRR  Q  +N++H I P ++K+ + ++I    +  
Sbjct: 542 NADGHVIMYADNMTDSMKAAIDETYRRRGIQEAYNREHGITPTTIKKAVRDLI---AISK 598

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           AA +  +ID    S+ K +    +K L K+M  AA  L+FE AA +RD+I  L+++ 
Sbjct: 599 AAESVSTIDKDVESMDKAEINKLIKELEKKMFRAAAELDFENAALLRDKISELRANL 655


>gi|255320767|ref|ZP_05361942.1| excinuclease ABC subunit B [Acinetobacter radioresistens SK82]
 gi|262379457|ref|ZP_06072613.1| excinuclease ABC, B subunit [Acinetobacter radioresistens SH164]
 gi|255302144|gb|EET81386.1| excinuclease ABC subunit B [Acinetobacter radioresistens SK82]
 gi|262298914|gb|EEY86827.1| excinuclease ABC, B subunit [Acinetobacter radioresistens SH164]
          Length = 673

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/669 (55%), Positives = 484/669 (72%), Gaps = 10/669 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ T Y P+GDQP AI +L+KGI    K QLLLGVTGSGKT+TMA VI   QRP IV
Sbjct: 5   RPFELVTQYAPAGDQPQAIEKLVKGIQQGYKSQLLLGVTGSGKTYTMANVIAQTQRPTIV 64

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+M
Sbjct: 65  MAHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQM 124

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SATRSLLER D I+V+SVS IYG+G  E+Y +M++ +  GD V + +++  LV+ QY 
Sbjct: 125 RLSATRSLLERRDAIIVASVSAIYGLGDPEAYMKMLLHIVQGDRVGRDDIIRRLVEMQYT 184

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R ++  +RGT+R+ G+ ++IFP+  E  A R+ +F ++++ I  F PLTG+ +R V  + 
Sbjct: 185 RNELEFVRGTYRIRGEIMDIFPAESEQNAIRIELFDDEVDSIRWFDPLTGKMLRKVPRVT 244

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYVTP+  L  A+  I++ELK +L    +  +LLEAQR+EQR  YDLEM++  G 
Sbjct: 245 IYPKSHYVTPKDNLVRAIDTIRDELKDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGY 304

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
              IENYSR+L+GR PG+ PPTLF+Y+P+D+LL +DESHVT+PQI  MY+GD  RK  L 
Sbjct: 305 TNGIENYSRHLSGRRPGDAPPTLFDYVPDDALLIIDESHVTVPQIGAMYKGDRSRKENLV 364

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            YGFRLPS +DNRP++FEEW  + PTT+ VSATP  +ELE+ +  +VEQ++RPTGL+DP 
Sbjct: 365 NYGFRLPSALDNRPMKFEEWERIIPTTVFVSATPARYELEKSEQ-VVEQVVRPTGLIDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR   TQV+DV  EIN+      R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T
Sbjct: 424 IEIRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTAYLKEYGVKVAYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER++II +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  K ILYAD IT S+Q AIDET RRR KQ+E N+ H I P+S   ++++ ID   +
Sbjct: 544 ARNIKGKAILYADRITDSMQKAIDETERRRNKQIEFNELHGIIPRSAVRQVIKEIDTGEV 603

Query: 739 EDAATTNISIDAQQLSLSKKK---------GKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                 +  I AQ LSL+  +            H+  L K+M  A+  L FE+AAR+RDE
Sbjct: 604 LAEDEIDEKITAQALSLTADERHILADPKLLSKHMAKLEKEMLKASKELQFEQAARLRDE 663

Query: 790 IKRLKSSPY 798
           I RLK+   
Sbjct: 664 ILRLKAQML 672


>gi|228955404|ref|ZP_04117409.1| UvrABC system protein B [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228804196|gb|EEM50810.1| UvrABC system protein B [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 658

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 480/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A T  +  +++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 EAETYEATPSKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|229082372|ref|ZP_04214835.1| UvrABC system protein B [Bacillus cereus Rock4-2]
 gi|228700804|gb|EEL53327.1| UvrABC system protein B [Bacillus cereus Rock4-2]
          Length = 658

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/656 (53%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  +++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETETYEATPSKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|15677197|ref|NP_274350.1| excinuclease ABC subunit B [Neisseria meningitidis MC58]
 gi|9911092|sp|O33395|UVRB_NEIMB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|7226574|gb|AAF41706.1| excinuclease ABC, subunit B [Neisseria meningitidis MC58]
 gi|325200045|gb|ADY95500.1| excinuclease ABC, B subunit [Neisseria meningitidis H44/76]
          Length = 675

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/665 (53%), Positives = 481/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ RND I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P TI VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   ++G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIEKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++  I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEQGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+  +        ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDGSKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRDIK 667

Query: 795 SSPYF 799
            +  F
Sbjct: 668 ENLLF 672


>gi|302385224|ref|YP_003821046.1| excinuclease ABC, B subunit [Clostridium saccharolyticum WM1]
 gi|302195852|gb|ADL03423.1| excinuclease ABC, B subunit [Clostridium saccharolyticum WM1]
          Length = 661

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/664 (53%), Positives = 472/664 (71%), Gaps = 5/664 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI QL+KG     + Q LLGVTGSGKTFTMA VI+ +QRP +++A
Sbjct: 3   FILHSEYDPTGDQPQAIDQLVKGFQEGNQFQTLLGVTGSGKTFTMANVIQKLQRPTLIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH
Sbjct: 63  HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E++  L+  QY R 
Sbjct: 123 SATAALSERKDVIIVASVSCIYGLGSPIDYQEMVISLRPGMIKDRDEVVHKLIDIQYDRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EIFP++    A+RV  FG+++E I+E   LTG+    +  + I+
Sbjct: 183 DMDFRRGTFRVRGDVVEIFPAYSGSEAYRVEFFGDEVERITEIDTLTGEIRAELGHVAIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV  R  +  A + I EELK ++   + E +LLEAQR+ +R  +D+EM++ TG C 
Sbjct: 243 PASHYVVSREKMELAAQTILEELKEQVAYFKSEDKLLEAQRISERTNFDVEMMKETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PG+PP TL +Y P+D L+ VDESH+T+PQ+ GM+ GD  RK TL  +
Sbjct: 303 GIENYSRHLTGGRPGDPPYTLIDYFPDDFLIIVDESHITLPQVRGMFAGDRSRKTTLVNF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATP  +E E  + + VEQIIRPTGL+DP ++
Sbjct: 363 GFRLPSALDNRPLNFEEFESKINQMMFVSATPSVYEAEH-ELLRVEQIIRPTGLLDPEID 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N    +  ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ TLE
Sbjct: 422 VRPVEGQIDDLVSEVNKEISKKNKVLITTLTKRMAEDLTDYMREVGIRVKYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RSEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S+++AI+ET RRR  Q  +N++H I P ++K+ + ++I       
Sbjct: 542 NSEGHVIMYADKVTDSMRVAIEETNRRRAIQQLYNEEHGITPTTIKKSVRDLIAISKAAI 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
               +   D +  S+  K+ +   K L K+MH AA  LNFEEAAR+RD + ++K     Q
Sbjct: 602 EEEKDFKKDPE--SMDAKELEKLAKELTKKMHQAAAELNFEEAARLRDRMVQIKK--MLQ 657

Query: 801 GLDD 804
            ++D
Sbjct: 658 DMED 661


>gi|54296068|ref|YP_122437.1| excinuclease ABC subunit B [Legionella pneumophila str. Paris]
 gi|81822670|sp|Q5X906|UVRB_LEGPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|53749853|emb|CAH11234.1| excinuclease ABC subunit B [Legionella pneumophila str. Paris]
          Length = 663

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/659 (55%), Positives = 479/659 (72%), Gaps = 1/659 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ ++Y P+GDQP AIA L+ G+ S    Q LLGVTGSGKTFT+A VI+AM+RP ++M
Sbjct: 4   LFKIYSNYQPAGDQPTAIASLIDGLESGLAKQTLLGVTGSGKTFTIAHVIQAMKRPTLIM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR
Sbjct: 64  APNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+V++VS IYG+G  +SY +M++ L  G+  +Q+++L  L + QY R
Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMLLHLSRGEQSDQRKILKRLAEMQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++ + RG FRV GD I+IFP+  E  A R+ +F ++++ I+ F PLTG+ ++ +  + I
Sbjct: 184 TNLSLERGQFRVHGDVIDIFPADSEKEAIRIELFDDEVDNIARFDPLTGEILQRLPRVTI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  +HYVTPR  +   ++ +K EL+ RL EL  + +L+EAQRLEQR  +D+EM+   G C
Sbjct: 244 FPKTHYVTPRERILETVEKVKVELQERLAELNAQNKLVEAQRLEQRTCFDIEMMLELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+ R  GE PPTLF+Y+P ++LL +DESHVT+PQI GMYRGD  RK TL  
Sbjct: 304 SGIENYSRYLSNREAGEAPPTLFDYLPPEALLIIDESHVTVPQIGGMYRGDRARKETLVN 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+    P TI +SATPG +E E     + EQ++RPTGL+DP V
Sbjct: 364 YGFRLPSALDNRPLRFEEFEERSPQTIYISATPGPYEQEHSDN-VAEQVVRPTGLIDPEV 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR  +TQV+D+  EI     QG RIL+T LTKRMAEDLTEYL E  I+VRY+HS+V T+
Sbjct: 423 EIRPVKTQVDDLMSEIRQVIAQGSRILVTTLTKRMAEDLTEYLSEHGIKVRYLHSDVDTV 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 483 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  + ILYADT+T S+Q A+ ET RRREKQ   N KH I P+ + + + ++++   + 
Sbjct: 543 RNVKGRAILYADTMTGSMQRALTETERRREKQKAFNLKHGITPKGINKSVEDILEGAYIG 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
              T       +    S ++    + +L KQM+  A N+ FE AA+IRDE   LK    
Sbjct: 603 KRKTMVAEQAPRYTHWSPQELAKEINALEKQMYAHAQNMEFELAAKIRDEYLLLKEQLM 661


>gi|319410597|emb|CBY90966.1| UvrABC system protein B Protein uvrB; Excinuclease ABC subunit B
           [Neisseria meningitidis WUE 2594]
          Length = 699

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/665 (53%), Positives = 479/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 33  SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 92

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 93  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 152

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 153 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 212

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 213 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 272

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A   IKEEL+ R+    KE R +E QR+EQR  +DLEML   G 
Sbjct: 273 VFPSSHYVTPRDTVLRACDSIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGF 332

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 333 CKGIENYSRHFSGKKEGEPPPTLMDYLPSNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 392

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 393 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 451

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 452 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 511

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 512 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 571

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 572 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 631

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 632 EEDSGKGRRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRNIK 691

Query: 795 SSPYF 799
            +  F
Sbjct: 692 ENLLF 696


>gi|294340539|emb|CAZ88923.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
           [Thiomonas sp. 3As]
          Length = 697

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/686 (53%), Positives = 484/686 (70%), Gaps = 7/686 (1%)

Query: 124 TPHRSWSINN-HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182
            P  S   +   S   + F++   Y P+GDQP AIAQL +G+      Q LLGVTGSGKT
Sbjct: 5   QPVPSLDPDKFVSYPDSPFRLYQPYPPAGDQPTAIAQLAEGLGDGLSYQTLLGVTGSGKT 64

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242
           +TMA VI  M RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D
Sbjct: 65  YTMANVIARMGRPAIVFAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRD 124

Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302
            +IEK+S+INE I++MR SAT+SLLER D ++V+SVS IYGIG+   Y  MI+ ++ GD 
Sbjct: 125 LFIEKDSAINEHIEQMRLSATKSLLERRDVVIVASVSAIYGIGNPSDYHAMILTVRTGDR 184

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
           + Q+++++ LV+ QY+R ++   RGTFRV GD I++FP+   ++A R+ +F ++IE +S 
Sbjct: 185 MGQRDVIAQLVRMQYQRNEVDFTRGTFRVRGDRIDVFPAEHAELAVRIELFDDEIESLSL 244

Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
           F PLTG   + +    IY +SHYVTPR  +  A + IK+EL+ R+ EL   G+L+EAQRL
Sbjct: 245 FDPLTGVVRQKIPRFTIYPSSHYVTPREKVLEAAEGIKQELRERVKELTGMGKLVEAQRL 304

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482
           EQR  +DLEML   G C+ IENYSR+L+G  PGEPPPTL +Y+P D+++F+DESHV I Q
Sbjct: 305 EQRTRFDLEMLTEIGHCKGIENYSRHLSGAAPGEPPPTLVDYLPPDAIMFLDESHVLIGQ 364

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542
            +GMY GD  RK TL +YGFRLPS +DNRPL+F E+      T+ VSATP  +E +    
Sbjct: 365 FNGMYNGDRARKQTLVDYGFRLPSALDNRPLKFAEFERKMRQTVFVSATPADYESQHADQ 424

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
            +VEQ++RPTGLVDP +E+R A +QV+DV  EI L   +G R+L+T LTKRMAE LT+YL
Sbjct: 425 -VVEQVVRPTGLVDPLIEVRPASSQVDDVLGEIRLRVNKGERVLITTLTKRMAEQLTDYL 483

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            E  ++VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKE
Sbjct: 484 DENGVKVRYLHSDIDTVERVEILRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKE 543

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
           GFLRS  SLIQTIGRAARNVN   ILY D IT S++ AIDET RRR KQ+  N +H I P
Sbjct: 544 GFLRSTRSLIQTIGRAARNVNGMAILYGDRITDSMRRAIDETERRRAKQIAFNTEHGITP 603

Query: 723 QSVKEKIMEVIDPILLEDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNL 778
            ++ + + ++ID ++             ++++     + +     +K L K+M   A NL
Sbjct: 604 TALNKSVRDLIDGVVQTPGKGLRAGSVEREIAELQIDNAQDVAREIKRLEKRMIEHARNL 663

Query: 779 NFEEAARIRDEIKRLKSSPYFQGLDD 804
            FE+AAR+RD++  L+   +  G DD
Sbjct: 664 EFEQAARVRDQLGLLRQRVFG-GGDD 688


>gi|161870204|ref|YP_001599374.1| excinuclease ABC subunit B [Neisseria meningitidis 053442]
 gi|161595757|gb|ABX73417.1| excinuclease ABC subunit B [Neisseria meningitidis 053442]
          Length = 716

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/665 (53%), Positives = 481/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 50  SPFKLHQPFQPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 109

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 110 MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 169

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ RND I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 170 RLSATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 229

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    
Sbjct: 230 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYT 289

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 290 VFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 349

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 350 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 409

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P TI VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 410 DYGFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 468

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G RIL+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 469 IIIRPVATQVDDLMSEINDRIQKGERILVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 528

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 529 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 588

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 589 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 648

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEA+ +RD I+ ++
Sbjct: 649 EEDSGKGRRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEASVLRDRIRGIR 708

Query: 795 SSPYF 799
               F
Sbjct: 709 EGLLF 713


>gi|294789333|ref|ZP_06754571.1| excinuclease ABC subunit B [Simonsiella muelleri ATCC 29453]
 gi|294482758|gb|EFG30447.1| excinuclease ABC subunit B [Simonsiella muelleri ATCC 29453]
          Length = 686

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/676 (53%), Positives = 485/676 (71%), Gaps = 16/676 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AI  LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAITGLLEGLSDGLSSQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP N+VEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENSVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ RND I+V++VS IYGIG    Y QMI+ +K GD++ Q++++S+LV  QY+
Sbjct: 129 RLSATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMILSVKEGDTINQRDIISTLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD ++++P+   DVA R+ +F ++IE +  F PL+G   + +    
Sbjct: 189 RGDLDFKRGSFRVRGDVVDVYPAESSDVALRIHLFDDEIERLDLFDPLSGSLHQRIGRFT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++  SHYVTPR T+  A + IK+EL+ R+    KE R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPGSHYVTPRDTVLRACESIKQELRERIDFYTKENRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P++++LFVDESHVTI QI  MY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPKNAILFVDESHVTIGQIGAMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+FEE+  + P TI VSATP ++E E   G IVEQ++RPTGL+DP 
Sbjct: 369 DYGFRLPSARDNRPLKFEEFERVMPQTIFVSATPAAYEAEHA-GQIVEQVVRPTGLLDPK 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR   +QV+D+  EIN+  ++G R+L+T LTKRMAE LT+Y  E  ++VRY+HS++ T
Sbjct: 428 IEIRPVSSQVDDLLSEINIRKEKGERVLVTTLTKRMAEQLTDYYTELGVKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N+++ I P+ + +K+ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKSAIDETERRREKQIKFNEENGIIPKQINKKVKDLIDGVYG 607

Query: 739 EDAATTNISIDAQQLSLSKKKGK---------------AHLKSLRKQMHLAADNLNFEEA 783
            ++  T +S   ++   +KK+ K                 +  L K+M  AA NL FEEA
Sbjct: 608 AESEETEVSGSLKKARANKKELKKSAYQAQIHNEEDAIKEIARLEKEMQTAARNLQFEEA 667

Query: 784 ARIRDEIKRLKSSPYF 799
           A IRD+I+ +K +  F
Sbjct: 668 AVIRDKIRNIKENLLF 683


>gi|332704019|ref|ZP_08424107.1| UvrABC system protein B [Desulfovibrio africanus str. Walvis Bay]
 gi|332554168|gb|EGJ51212.1| UvrABC system protein B [Desulfovibrio africanus str. Walvis Bay]
          Length = 679

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/670 (52%), Positives = 466/670 (69%), Gaps = 2/670 (0%)

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
               +N       F++ + + P GDQP AI +L   I +    Q+LLGVTGSGKTFTMA 
Sbjct: 4   PELTHNWQTMSEKFKLVSPFEPMGDQPQAIEKLAWAIENGVSEQVLLGVTGSGKTFTMAN 63

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           V+  + RP +VMAPNK LAAQL++EFK  FP NAVEYFVSYYDYYQPEAY+P TDTYIEK
Sbjct: 64  VVAKVNRPTLVMAPNKTLAAQLFNEFKALFPENAVEYFVSYYDYYQPEAYLPHTDTYIEK 123

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           +SSIN+ ID++RHSAT +LL R D ++V+SVSCIYG+GS E Y++M+V L+ G  +  + 
Sbjct: 124 DSSINDDIDKLRHSATHALLTRRDVLIVASVSCIYGLGSPEYYAKMVVPLERGQQLSMER 183

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           L + LV+  Y+R D    RG FRV GD +EI P++  + A RV  FG+++E I E  PLT
Sbjct: 184 LAARLVEVHYERNDYDFSRGKFRVRGDVLEIIPAYSRERALRVEFFGDEVEAIYETDPLT 243

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           G+    ++   I+  SH+V+ R   + A   I++EL  RL   ++E +LLEAQR+EQR  
Sbjct: 244 GEVFSTIKKTVIFPASHFVSDRDNTSRASSDIRDELGERLRYFQRENKLLEAQRIEQRTM 303

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           +DLEM+E  G C  IENYSR+L GR  GEPP TL +Y PED LLFVDESH+TI QI GM+
Sbjct: 304 FDLEMIEELGYCNGIENYSRHLDGRRAGEPPATLLDYFPEDFLLFVDESHITISQIGGMF 363

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
           +GD  RK TL ++GFRLPS +DNRPL FEE+       + VSATPG WELE+    +VEQ
Sbjct: 364 KGDRSRKQTLVDFGFRLPSALDNRPLAFEEFLTRVNQCVYVSATPGPWELERSGDAVVEQ 423

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           IIRPTGLVDP +E+R  + Q++++  E  L   +G R+L+T LTKRMAEDLTEY+    +
Sbjct: 424 IIRPTGLVDPILEVRPVKGQMDNLLAECKLRKTRGERVLVTTLTKRMAEDLTEYMLSMGV 483

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           + RY+HS++ TLER+ II+ LR G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS
Sbjct: 484 QTRYLHSDIDTLERVAIIQALRAGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRS 543

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
             SL+QT GRAARNV  KV++YAD IT S++ A+DET RRR +Q +HN++  I P+++ +
Sbjct: 544 ARSLVQTFGRAARNVGGKVVMYADKITDSMRAAMDETNRRRTRQEDHNREMGITPRTILK 603

Query: 728 KIMEVIDPILLEDAATT--NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
            +  V++ +  +  A T   ++ +A +     K+ +  +KSL + M  AA  L FE AA 
Sbjct: 604 SLENVLEKLYPDSEAETYAKVAEEAAKYGHDPKRIEKEIKSLERDMREAAKELAFERAAE 663

Query: 786 IRDEIKRLKS 795
           IRD I  LK 
Sbjct: 664 IRDRIFSLKQ 673


>gi|254805128|ref|YP_003083349.1| excinuclease ABC subunit B [Neisseria meningitidis alpha14]
 gi|254668670|emb|CBA06367.1| excinuclease ABC subunit B [Neisseria meningitidis alpha14]
          Length = 696

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/665 (53%), Positives = 479/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 33  SPFKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 92

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 93  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 152

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 153 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 212

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 213 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 272

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A   IKEEL+ R+    KE R +E QR+EQR  +DLEML   G 
Sbjct: 273 VFPSSHYVTPRDTVLRACDSIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGF 332

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 333 CKGIENYSRHFSGKKEGEPPPTLMDYLPSNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 392

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 393 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 451

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 452 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 511

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 512 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 571

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 572 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 631

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 632 EEDSGKGRRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIK 691

Query: 795 SSPYF 799
            +  F
Sbjct: 692 ENLLF 696


>gi|34580788|ref|ZP_00142268.1| excinuclease ABC subunit B [Rickettsia sibirica 246]
 gi|28262173|gb|EAA25677.1| excinuclease ABC subunit B [Rickettsia sibirica 246]
          Length = 661

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/661 (59%), Positives = 492/661 (74%), Gaps = 3/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + ++Y P+GDQP AI +++ G+ S+++ Q+LLG+TGSGKTFTMA +IE   RP +
Sbjct: 1   MNNFSIISEYKPAGDQPKAIDEIIAGLSSKKRSQMLLGITGSGKTFTMANIIERTNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MA NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID 
Sbjct: 61  IMAHNKTLAAQIYSEMKSLFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRH+ATRSLLER D IVVSSVSCIYG+GS + Y QM+V L+ G S  + +LL+ L+  QY
Sbjct: 121 MRHAATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMMVNLEPGQSYPRDQLLNDLINLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DIG  RG FRV GD+I+IFPSH  D AWR+S FGN++E I EF PLTG+K+  ++  
Sbjct: 181 ERNDIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLAKLDKT 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++ NSH+V P+ T+N A+  I+EEL+ RL  L+ + + LE QRL QR  YDLEML  TG
Sbjct: 241 MVFGNSHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC+ +ENYSR+ TGRNPGEPPPTLFEY+PED+LLFVDESHV++PQI  MY GD  RK  L
Sbjct: 301 SCKGVENYSRFFTGRNPGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKKVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEEW+  RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLKFEEWDKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              I+ A  QVED+  EI     QG R+L+T LT++MAEDLT YL E   +  Y+HS V 
Sbjct: 421 ECIIKPATNQVEDLISEIQTTIAQGFRVLVTTLTQKMAEDLTAYLQELKYKTSYLHSNVH 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI+RDLR G  DVLVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 481 TLERIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VILYAD +TKSI  A+ ET RRR+ Q E+N+KH I P+++   I  + +   
Sbjct: 541 AARNSAGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGIIPKTINRAIHTLAE--- 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            E   +      A  L  +  K K H+  L+K+M  AA NL FE+A ++RD++K L+ + 
Sbjct: 598 FEKIDSKLDKKQAHTLFDNPAKLKTHIDKLKKEMLKAASNLEFEQAIKLRDQLKTLEEAA 657

Query: 798 Y 798
            
Sbjct: 658 L 658


>gi|239948098|ref|ZP_04699851.1| excinuclease ABC subunit B [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922374|gb|EER22398.1| excinuclease ABC subunit B [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 663

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/661 (59%), Positives = 494/661 (74%), Gaps = 3/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + ++Y P+GDQP AI +++ G++S+++ Q+LLG+TGSGKTFTMA +IE   RP +
Sbjct: 1   MNNFSIISEYKPAGDQPKAIDEIIAGLNSKKRSQMLLGITGSGKTFTMANIIERTNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MA NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID 
Sbjct: 61  IMAHNKTLAAQIYSEMKSIFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSATRSLLER D IVVSSVSCIYG+GS + Y QM V L+ G S  + +LL+ L+  QY
Sbjct: 121 MRHSATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMTVNLEPGQSYPRDKLLNDLINLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DIG  RG FRV GD+I+IFPSH  D AWR+S FGN++E I EF PLTG+K+  ++  
Sbjct: 181 ERNDIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGKKLAKLDKA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++ NSH+V P+ T+N+A+  I+EEL+ RL  L+ + + LE QRL QR  YDLEML  TG
Sbjct: 241 MVFGNSHFVMPQETVNSAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC+ +ENYSR+ TGRN G+PPPTLFEY+PED+LLFVDESHV++PQI  MY GD  RK  L
Sbjct: 301 SCKGVENYSRFFTGRNAGKPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKEVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEEW   RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFELEETDGTVVELIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              I+ A  QVED+  EI     +G R+L+T LTK+MAEDLT YL +   +  Y+HS V 
Sbjct: 421 ECIIKPATNQVEDLISEIQTTISKGFRVLVTTLTKKMAEDLTAYLQDLKYKTSYLHSNVH 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI+RDLR G  D+LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 481 TLERIEILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VILYAD +TKSI  A+ ET RRR+ Q E+N+KH I P+++   I  + +   
Sbjct: 541 AARNSEGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGIIPKTINRAIHALAE--- 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           LE   +      A  L  +  K KAH+  L+K M  AA+NL FE+AA++RD++K L+ + 
Sbjct: 598 LEKIDSKLDKKQAHTLFDNPAKLKAHIDKLKKDMLKAANNLEFEQAAKLRDQLKTLEEAA 657

Query: 798 Y 798
            
Sbjct: 658 L 658


>gi|311694263|gb|ADP97136.1| excinuclease ABC subunit B [marine bacterium HP15]
          Length = 686

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/686 (54%), Positives = 487/686 (70%), Gaps = 13/686 (1%)

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
           + +  N S     FQ+ + + P+GDQP AI  L+ GI S    Q LLGVTGSGKTFT+A 
Sbjct: 2   ASNQANVSAREGVFQVDSPFQPAGDQPKAIEGLMDGIQSGLAHQTLLGVTGSGKTFTIAN 61

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           VI+ +QRP I+MA NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK
Sbjct: 62  VIQQVQRPTIIMAHNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEK 121

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           ++SINE I++MR SAT++LLER D I+V++VS IYG+G  +SY +M++ L  GD ++Q+ 
Sbjct: 122 DASINEHIEQMRLSATKALLERPDAIIVATVSSIYGLGDPQSYLKMMLHLDRGDQIDQRY 181

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           +L  L + QY R DI   R  +RV GD I++FP+  E  A R+ +F +++E +S F PLT
Sbjct: 182 ILRRLAELQYTRNDIEFHRANYRVRGDVIDVFPAESEKEAIRIELFDDEVENLSYFDPLT 241

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           G+ +R V  + IY  SHYVTPR T+  A+++IK EL  RL +L    RL+EAQRLE+R  
Sbjct: 242 GEVLRRVPRVTIYPKSHYVTPRQTVLDAVEHIKVELDERLQQLRDNNRLVEAQRLEERTR 301

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           YD+EM+   G C  IENYSRYL+GR PGE PPTLF+Y+P ++LL VDESHVTIPQI  MY
Sbjct: 302 YDIEMMLELGYCNGIENYSRYLSGRRPGEAPPTLFDYLPPNALLVVDESHVTIPQIGAMY 361

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
           +GD  RK TL EYGFRLPS +DNRP++FEEW  + P  I VSATP ++E E   G +VEQ
Sbjct: 362 KGDRSRKETLVEYGFRLPSALDNRPMKFEEWERIAPQMIFVSATPSTYEAEHA-GQVVEQ 420

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           ++RPTGL+DP +E+R A TQV+D+  EI+   +   R+L+T LTKRMAEDLT++L E +I
Sbjct: 421 VVRPTGLLDPEIEVRPASTQVDDLLSEIHTRVKVKERVLVTTLTKRMAEDLTDFLMEHDI 480

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +VRY+HS++ T+ER+EIIRDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS
Sbjct: 481 KVRYLHSDIDTVERVEIIRDLRRGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 540

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           + SLIQT+GRAARNV+ K ILY D IT S+Q AIDET RRR KQ  HN +  I PQ + +
Sbjct: 541 ERSLIQTMGRAARNVHGKAILYGDRITGSMQRAIDETERRRAKQEAHNLEQGITPQGLNK 600

Query: 728 KIMEVIDPILL------------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAA 775
           KI ++++                + AA       A+  + S ++    +  L  +M+ AA
Sbjct: 601 KIADIMEGAGGGGRGRRKAERPGQKAAEEAEQYRAKAGNRSPEEVLKEVSRLEDEMYKAA 660

Query: 776 DNLNFEEAARIRDEIKRLKSSPYFQG 801
             L+FE AAR+RD+I  LK +    G
Sbjct: 661 SELDFETAARLRDDIAELKEAALRTG 686


>gi|18309285|ref|NP_561219.1| excinuclease ABC subunit B [Clostridium perfringens str. 13]
 gi|20141966|sp|Q46323|UVRB_CLOPE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|18143961|dbj|BAB80009.1| excinuclease ABC subunit B [Clostridium perfringens str. 13]
          Length = 659

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/659 (53%), Positives = 472/659 (71%), Gaps = 2/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++Q+ + P+GDQP AI  L++ I +  + Q LLGVTGSGKTFTMA +IE  Q+P +
Sbjct: 1   MGEFKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID+
Sbjct: 61  ILAHNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  L++ QY
Sbjct: 121 LRHSATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD+++I PS       R+  FG++I+ I EF  LTG  I   + +
Sbjct: 181 ERNDIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I   SH+     TL  +++ I++EL+ RL  L  E ++LEAQRL+QR  YD+EM+   G
Sbjct: 241 SITPASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+  MY GD  RK +L
Sbjct: 301 YCQGIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLP   DNRPL+F E+       + VSATPG +EL+  + I+ EQIIRPTGL+DP
Sbjct: 361 VEFGFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSE-IVAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR  + Q++D+Y EI    Q+G R+L+T LTKRMAEDLT+YL + N++  YMHS++ 
Sbjct: 420 VIEIRPIQGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++IIR+LRLG+ DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+YAD ITKS+  +I ET RRR  Q+E+N++HNI P +V + + ++I+   
Sbjct: 540 AARNSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + +    N   + ++ +      +  ++   ++M  AA NL FE AA +RD IK LK +
Sbjct: 600 VSEEKE-NYESEVKKAAKKDIPVEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDLKEN 657


>gi|110799055|ref|YP_694760.1| excinuclease ABC subunit B [Clostridium perfringens ATCC 13124]
 gi|168212778|ref|ZP_02638403.1| excinuclease ABC, B subunit [Clostridium perfringens CPE str.
           F4969]
 gi|123050084|sp|Q0TUD0|UVRB_CLOP1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|110673702|gb|ABG82689.1| excinuclease ABC, B subunit [Clostridium perfringens ATCC 13124]
 gi|170715774|gb|EDT27956.1| excinuclease ABC, B subunit [Clostridium perfringens CPE str.
           F4969]
          Length = 659

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/659 (52%), Positives = 472/659 (71%), Gaps = 2/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++Q+ + P+GDQP AI  L++ I +  + Q LLGVTGSGKTFTMA +IE  Q+P +
Sbjct: 1   MGEFKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID+
Sbjct: 61  ILAHNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  L++ QY
Sbjct: 121 LRHSATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD+++I PS       R+  FG++I+ I EF  LTG  I   + +
Sbjct: 181 ERNDIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I   SH+     TL  +++ I++EL+ RL  L  E ++LEAQRL+QR  YD+EM+   G
Sbjct: 241 SITPASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+  MY GD  RK +L
Sbjct: 301 YCQGIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLP   DNRPL+F E+       + VSATPG +EL+  + ++ EQIIRPTGL+DP
Sbjct: 361 VEFGFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSK-VVAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR  + Q++D+Y EI    Q+G R+L+T LTKRMAEDLT+YL + N++  YMHS++ 
Sbjct: 420 VIEIRPIQGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++IIR+LRLG+ DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+YAD ITKS+  +I ET RRR  Q+E+N++HNI P +V + + ++I+   
Sbjct: 540 AARNSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + +    N   + ++ +      +  ++   ++M  AA NL FE AA +RD IK LK +
Sbjct: 600 VSEEKE-NYEDEVKKAAKKDIPVEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDLKEN 657


>gi|294663891|ref|ZP_06729329.1| excinuclease ABC subunit B [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292606338|gb|EFF49551.1| excinuclease ABC subunit B [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 673

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/669 (54%), Positives = 486/669 (72%), Gaps = 10/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L +G+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG  +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGGTLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +E+ +  G + E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYEVRESAGEVTELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E++   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV+  I ++++    + 
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVERPIADIMEGARDDA 604

Query: 741 AATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           A   +                  ++   +    LKSL ++M+  A +L FE AA+IRD+I
Sbjct: 605 AEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGKLKSLEQKMYQHAKDLEFEAAAQIRDQI 664

Query: 791 KRLKSSPYF 799
           ++LK++   
Sbjct: 665 QKLKAASLG 673


>gi|319639507|ref|ZP_07994256.1| UvrABC system protein B [Neisseria mucosa C102]
 gi|317399273|gb|EFV79945.1| UvrABC system protein B [Neisseria mucosa C102]
          Length = 675

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/665 (53%), Positives = 482/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRETVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P TI VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT+GRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTMGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT SI+ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSIKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDSGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIK 667

Query: 795 SSPYF 799
            +  F
Sbjct: 668 ENLLF 672


>gi|241763771|ref|ZP_04761818.1| excinuclease ABC, B subunit [Acidovorax delafieldii 2AN]
 gi|241366990|gb|EER61386.1| excinuclease ABC, B subunit [Acidovorax delafieldii 2AN]
          Length = 696

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/673 (53%), Positives = 486/673 (72%), Gaps = 7/673 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   Y P+GDQP AI +L++G+   E  Q LLGVTGSGKTFTMA VI  M RPAIV
Sbjct: 22  SPFELFQPYPPAGDQPEAIDKLVEGLRDGETFQTLLGVTGSGKTFTMANVIARMGRPAIV 81

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++M
Sbjct: 82  FAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQM 141

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R S T+SL+ER D ++V++VS IYGIG  ESY +M++ L++GD + Q+++++ L++ QY+
Sbjct: 142 RLSCTKSLMERRDVVIVATVSAIYGIGEPESYHRMVMTLRVGDQLGQRDVIAQLIRMQYQ 201

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +    RG FRV GD+I++FP+   ++A R+ +F ++IE +  F PLTG+  + +    
Sbjct: 202 RNEADFSRGKFRVRGDTIDVFPAEHSELAIRIELFDDEIESLQLFDPLTGRVKQKIPRFT 261

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +SHYVTPR  +  A++ IK EL  RL +L  EG+L+EAQRLEQR  +DLEML   G 
Sbjct: 262 VYPSSHYVTPRDKVLAAVETIKIELAERLQQLLAEGKLVEAQRLEQRTRFDLEMLSEVGH 321

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENY+R+L+G  PG+PP TL +Y+P+DS++F+DESH  I Q+S MY GD  RK TL 
Sbjct: 322 CKGIENYTRHLSGSAPGDPPSTLTDYMPKDSIMFLDESHQMIGQLSAMYNGDRARKTTLV 381

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+       I VSATP  +E     G +V+Q++RPTGLVDP 
Sbjct: 382 EYGFRLPSALDNRPLKFEEFEQRMRQVIFVSATPADYEKTHA-GQVVDQVVRPTGLVDPV 440

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R A  QV+DV  EI +  ++  R+L+T LTKRMAE LT+YL +  ++VRY+HS+V T
Sbjct: 441 VEVRPAMHQVDDVLQEIRIRVEKHERVLITTLTKRMAEQLTDYLTDNGVKVRYLHSDVDT 500

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 501 VERVEIIRDLRLGSFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA 560

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN N   ILYAD IT+S++ A+ ET RRR KQ+ +N+ H I P+S+ +++ ++ID +  
Sbjct: 561 ARNQNGHAILYADRITESMKKAMGETERRRLKQIAYNEAHGITPRSIVKRVRDLIDGVYS 620

Query: 739 EDAATTNISID------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           E A      ++      A+   +S+K     +K L K M   A NL FE+AA++RD++ R
Sbjct: 621 EKAGKDAERLEQEALQRAKVEDMSEKDVAREIKRLEKLMLEHARNLEFEQAAQVRDQLTR 680

Query: 793 LKSSPYFQGLDDS 805
           LK   +     DS
Sbjct: 681 LKDRAFGAHGSDS 693


>gi|81311790|sp|Q5GXX4|UVRB_XANOR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|58427410|gb|AAW76447.1| excinuclease ABC subunit B [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 688

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/688 (54%), Positives = 492/688 (71%), Gaps = 12/688 (1%)

Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181
           +     S S+         FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGK
Sbjct: 1   MLASVNSCSLPRDRSMTDRFQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGK 60

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
           T+T+A V++ +Q+P +VMAPNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +
Sbjct: 61  TYTIANVVQQVQKPTLVMAPNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSS 120

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           DT+IEK+SSINE I++MR SAT++LL R D +VV++VS IYG+G+ E Y  + + L IG+
Sbjct: 121 DTFIEKDSSINEHIEQMRLSATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGE 180

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
            ++Q++L+  L   QY R +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++
Sbjct: 181 HIDQRQLIRHLTDLQYTRNEFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLT 240

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
            F PLTG+ +R ++   +Y  +HY T R    +A+  IKEELK RL +L  + +L+EAQR
Sbjct: 241 LFDPLTGETLRKLQRYTVYPKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQR 300

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
           L QR  +DLEM+   G C  IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIP
Sbjct: 301 LAQRTQFDLEMMAEVGFCNGIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIP 360

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           QI  MY+GD  RK TL E+GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  
Sbjct: 361 QIGAMYKGDRSRKETLVEFGFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESA 420

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G + E ++RPTGL+DP VEIR   TQV+D+  EI+   + G R+L+T LTKRMAE+LTEY
Sbjct: 421 GEVTELVVRPTGLIDPVVEIRPVGTQVDDLMSEIHERIKLGDRVLVTTLTKRMAENLTEY 480

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L E  IRVRY+HS++ T+ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADK
Sbjct: 481 LGEHGIRVRYLHSDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADK 540

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN 721
           EGFLRS  SLIQTIGRAARN+  K ILYAD +T+S+Q AIDE+ RRREKQ+E+N +H I 
Sbjct: 541 EGFLRSTGSLIQTIGRAARNLRGKAILYADKMTRSMQAAIDESDRRREKQVEYNLEHGIT 600

Query: 722 PQSVKEKIMEVIDPILLEDAATTNISID-----------AQQLSLSKKKGKAHLKSLRKQ 770
           P+SV+  I ++++    EDAA                      ++   +    LKSL ++
Sbjct: 601 PESVERPISDIMEG-AREDAAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGKLKSLEQK 659

Query: 771 MHLAADNLNFEEAARIRDEIKRLKSSPY 798
           M+  A +L FE AA+IRD+I++LK++  
Sbjct: 660 MYQHAKDLEFEAAAQIRDQIQKLKTASL 687


>gi|319786463|ref|YP_004145938.1| excinuclease ABC subunit B [Pseudoxanthomonas suwonensis 11-1]
 gi|317464975|gb|ADV26707.1| excinuclease ABC, B subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 675

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/669 (55%), Positives = 486/669 (72%), Gaps = 11/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L++G  +    Q+LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FELVSPYAPAGDQPYAIEKLVEGFDAGLAKQVLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+N+VEYFVSYYDYYQPEAYVP TDT+IEK+SSIN+ I++MR 
Sbjct: 65  HNKTLAAQLYGEFKAFFPNNSVEYFVSYYDYYQPEAYVPSTDTFIEKDSSINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++LL R D +VV++VS IYG+G+ E Y  + + L  G+ ++Q+ELL  L + QY R 
Sbjct: 125 AATKALLSRRDVLVVATVSAIYGLGAPEDYLSLRLILSRGERIDQRELLRHLTQLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RGTFRV G+ +++ P+  +  A R+ +F  ++E IS F PLTG+ +R V    IY
Sbjct: 185 EYELQRGTFRVRGEVVDVHPAESDAEAVRIELFDGEVENISLFDPLTGEVLRRVPRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R  + +A++ IK ELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRDRVLSAIETIKVELKERLEQLYAQNKLVEAQRLAQRTQFDLEMMAEVGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PG+PPPTLF+Y+P D+LL VDESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGQPPPTLFDYLPADALLVVDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEEW    P +I VSATPG +E  +    +VE ++RPTGLVDP VE
Sbjct: 365 GFRLPSALDNRPLKFEEWEERAPRSIYVSATPGPYEQREAGDQVVELVVRPTGLVDPQVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EIN    QG R+L+T LTKRMAE+LT+YL E +I+VRY+HS+V T+E
Sbjct: 425 IRPVGTQVDDLMGEINKCVAQGDRVLVTTLTKRMAENLTDYLAEHDIKVRYLHSDVDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSSGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  + ILYAD+IT+S+Q AI+ET RRREKQ ++N +H I P+ V  +IM+V++    E 
Sbjct: 545 NLRGRAILYADSITRSMQAAIEETNRRREKQEQYNAEHGIVPRQVVRQIMDVMEGARAEP 604

Query: 741 AATTN-----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
             T                 A   +L   K  A ++ L ++M+  A +L FE+AAR+RDE
Sbjct: 605 GETKGKGKGRGKTRQVAEPAADYSTLDPAKAVAKIQELEQRMYQHARDLEFEDAARLRDE 664

Query: 790 IKRLKSSPY 798
           I++LK +  
Sbjct: 665 IRKLKEASL 673


>gi|229187375|ref|ZP_04314518.1| UvrABC system protein B [Bacillus cereus BGSC 6E1]
 gi|228596079|gb|EEK53756.1| UvrABC system protein B [Bacillus cereus BGSC 6E1]
          Length = 658

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/656 (53%), Positives = 478/656 (72%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 EPEIYEATPAKK--MTKKEREKTIAKVEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|89900959|ref|YP_523430.1| excinuclease ABC subunit B [Rhodoferax ferrireducens T118]
 gi|89345696|gb|ABD69899.1| excinuclease ABC, B subunit [Rhodoferax ferrireducens T118]
          Length = 710

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/710 (52%), Positives = 496/710 (69%), Gaps = 17/710 (2%)

Query: 102 SVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLL 161
           +V   A L+ S +        +  +            + F++   Y P+GDQP AI QL+
Sbjct: 2   TVPTPAALVTSSDAEPVRSGTFVRY----------PDSPFELYQPYPPAGDQPEAINQLV 51

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
           +G++  E  Q+LLGVTGSGKTFTMA VI  + RPAIV APNK LAAQLYSEF+ FFP NA
Sbjct: 52  EGVNDGEVFQILLGVTGSGKTFTMANVIARLGRPAIVFAPNKTLAAQLYSEFREFFPKNA 111

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
           VEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++MR S T+S+LER D ++V++VS I
Sbjct: 112 VEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMRLSCTKSVLERRDVVIVATVSAI 171

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
           YGIG  E+Y +M++ L++GD + Q+++++ LV+ QY+R D+   RG FRV GD+I+IFP+
Sbjct: 172 YGIGQPEAYHKMVMTLRVGDKLGQRDMIAQLVRMQYQRNDVDFSRGAFRVRGDTIDIFPA 231

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
              ++A RV +F ++IE +  F PLTG+  + +    +Y +SHYVTPR  + +A++ IK 
Sbjct: 232 EHSEMAIRVELFDDEIESLQLFDPLTGRIRQKIPRFTVYPSSHYVTPREQVLSAVEAIKI 291

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           EL  R+ E   +G+L+EAQR+EQR  +DLEML   G C+ IENYSR+L+G  PGEPP TL
Sbjct: 292 ELAERIKEFVGQGKLVEAQRIEQRTRFDLEMLSEVGHCKGIENYSRHLSGAAPGEPPATL 351

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+P+D+L+F+DESHV I Q   MY GD  RK TL EYGFRLPS +DNRPL+FEE+   
Sbjct: 352 TDYLPKDALMFLDESHVLIGQFGAMYNGDRSRKTTLVEYGFRLPSALDNRPLKFEEFETR 411

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
               I VSATP  WE +   G IVEQ++RPTGLVDP VE+R A  QV+DV  EI +  ++
Sbjct: 412 MRQAIFVSATPAQWEKDHA-GKIVEQLVRPTGLVDPEVEVRPAVNQVDDVLQEIRIRVEK 470

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R+L+T LTKRMAE LT+YL +  ++VRY+HS++ T+ER+EI+RDLRLG FDVLVGINL
Sbjct: 471 HERVLITTLTKRMAEQLTDYLSDNGVKVRYLHSDIDTVERVEILRDLRLGTFDVLVGINL 530

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           LREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAARN+  + ILYAD +T+S++ AI
Sbjct: 531 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLEGRAILYADKVTESMRKAI 590

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID------AQQLSL 755
            ET RRR KQ+ HN    I P+S+ +++ ++ID +  E A      ++      AQ   +
Sbjct: 591 GETERRRVKQVTHNLAMGITPRSIVKQVKDLIDGVYSEKAGQEAEKLERDAMQRAQVEDM 650

Query: 756 SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           S+K     +K L K M   A NL FE+AAR+RD++  LK   +     D+
Sbjct: 651 SEKDISREIKRLEKLMMEHARNLEFEKAARVRDQLGILKEQAFGAAGRDN 700


>gi|184159102|ref|YP_001847441.1| excinuclease ABC subunit B [Acinetobacter baumannii ACICU]
 gi|239501080|ref|ZP_04660390.1| excinuclease ABC subunit B [Acinetobacter baumannii AB900]
 gi|332875931|ref|ZP_08443717.1| excinuclease ABC, B subunit [Acinetobacter baumannii 6014059]
 gi|183210696|gb|ACC58094.1| Helicase subunit of the DNA excision repair complex [Acinetobacter
           baumannii ACICU]
 gi|193078002|gb|ABO12922.2| excinuclease ABC subunit B [Acinetobacter baumannii ATCC 17978]
 gi|322509016|gb|ADX04470.1| uvrB [Acinetobacter baumannii 1656-2]
 gi|323518998|gb|ADX93379.1| excinuclease ABC subunit B [Acinetobacter baumannii TCDC-AB0715]
 gi|332735797|gb|EGJ66838.1| excinuclease ABC, B subunit [Acinetobacter baumannii 6014059]
          Length = 673

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/668 (55%), Positives = 480/668 (71%), Gaps = 10/668 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + T Y P+GDQP AI +L+ GI    + QLLLGVTGSGKT+TMA VI   QRP IVM
Sbjct: 6   PFDLVTHYQPAGDQPQAIEKLVNGIEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVM 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR
Sbjct: 66  AHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V + E++  LV+ QY R
Sbjct: 126 LSATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVQGDRVSRDEIIRRLVEMQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++  +RGT+R+ G+ I+IFP+  +  A R+ +F ++++ I  F PLTG+ +R V  + I
Sbjct: 186 NELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVPRVTI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  SHYVTP+  L  A+  IK+EL+ +L    +  +LLEAQR+EQR  YDLEM++  G  
Sbjct: 246 YPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYT 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+GR  GE PPTLF+Y+PED+LL +DESHVT+PQI  MY+GD  RK  L  
Sbjct: 306 NGIENYSRHLSGRPAGEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVN 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP++FEEW  + PTTI VSATP  +ELE+ +  +VEQ++RPTGL+DP +
Sbjct: 366 YGFRLPSALDNRPMKFEEWERIVPTTIFVSATPARYELEKSEQ-VVEQVVRPTGLIDPEI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+DV  EIN+      R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T+
Sbjct: 425 EVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++II +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  K ILYADTIT S++ AIDET RRR KQ+E N++H I P+S   + ++ ID   + 
Sbjct: 545 RNVKGKAILYADTITDSMRKAIDETERRRAKQIEFNEQHGITPRSAVRQAVKEIDTGEVL 604

Query: 740 DAATTNISIDAQQLSLSKKKG---------KAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                +  +  Q  +LS  +            H+  L K+M  A+ +L FE+AARIRDEI
Sbjct: 605 SDDQIDEKVLEQAQALSADERHILSDPKLFSKHITKLEKEMLKASKDLQFEQAARIRDEI 664

Query: 791 KRLKSSPY 798
            RLK+   
Sbjct: 665 VRLKAQML 672


>gi|294651009|ref|ZP_06728349.1| excinuclease ABC subunit B [Acinetobacter haemolyticus ATCC 19194]
 gi|292823110|gb|EFF81973.1| excinuclease ABC subunit B [Acinetobacter haemolyticus ATCC 19194]
          Length = 680

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/672 (55%), Positives = 482/672 (71%), Gaps = 10/672 (1%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
              +    F++ T+Y P+GDQP AI +L+ GI    + QLLLGVTGSGKT+TMA VI   
Sbjct: 5   QEQETGQPFELVTNYQPAGDQPQAIEKLVNGIEHGFRNQLLLGVTGSGKTYTMANVIAKT 64

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP IVMA NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN
Sbjct: 65  QRPTIVMAHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAIN 124

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ID+MR SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V + +++  L
Sbjct: 125 DHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHIVQGDRVSRDDIIRRL 184

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V+ QY R ++  +RGT+R+ G+ I+IFP+  +  A RV +F ++++ I  F PLTG+ +R
Sbjct: 185 VEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQDAIRVELFDDEVDSIRWFDPLTGKLVR 244

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V  + IY  SHYVTP+  L  A+  IK+ELK +L   +   +LLEAQR+EQR  YDLEM
Sbjct: 245 KVPRVTIYPKSHYVTPKDHLTRAIDTIKDELKDQLKFFKDNDKLLEAQRIEQRTRYDLEM 304

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           ++  G    IENYSR+L+GR  GE PPTLF+Y+PED+LL +DESHVT+PQI  MY+GD  
Sbjct: 305 MQQLGYTNGIENYSRHLSGRTAGEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRS 364

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  YGFRLPS +DNRP++FEEW  + PTT+ VSATP  +ELE+ +  +VEQ++RPT
Sbjct: 365 RKENLVNYGFRLPSALDNRPMKFEEWERIVPTTVFVSATPALYELEKSEQ-VVEQVVRPT 423

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP +E+R   TQV+DV  EIN+  Q   R+L+T LTKRMAEDLT YL E  ++V Y+
Sbjct: 424 GLIDPEIEVRPVLTQVDDVLSEINIRRQLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYL 483

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++ T+ER++II +LR G  DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLI
Sbjct: 484 HSDIDTVERVKIIHELRTGVHDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 543

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS-VKEKIME 731
           QTIGRAARNV  K ILYAD IT S++ AIDET RRR KQ+E N+ H I P+S V++ I E
Sbjct: 544 QTIGRAARNVKGKAILYADRITDSMRKAIDETDRRRNKQIEFNELHGITPRSAVRQTIKE 603

Query: 732 VIDPILLEDAATTN--------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
           +    +L D             IS D Q L    K    H+  L K+M  A+  L FE+A
Sbjct: 604 IDTGEVLTDDQIDENALQQAQSISADEQHLLSDPKLFAKHIGKLEKEMLKASKELQFEQA 663

Query: 784 ARIRDEIKRLKS 795
           AR+RDEI RLK+
Sbjct: 664 ARLRDEIVRLKA 675


>gi|309378820|emb|CBX22525.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 675

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/665 (53%), Positives = 480/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++ Q++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIAQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPK 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDSGKGRRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRNIK 667

Query: 795 SSPYF 799
            S  F
Sbjct: 668 ESMLF 672


>gi|262276857|ref|ZP_06054650.1| excinuclease ABC subunit B [alpha proteobacterium HIMB114]
 gi|262223960|gb|EEY74419.1| excinuclease ABC subunit B [alpha proteobacterium HIMB114]
          Length = 715

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/667 (62%), Positives = 527/667 (79%), Gaps = 6/667 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N  +    F++ +++ PSGDQP AI +L  G++ ++K Q+LLGVTGSGKTFTMAK+IE +
Sbjct: 21  NKLEGGKDFKITSNFKPSGDQPMAIKELCSGLNDQQKNQVLLGVTGSGKTFTMAKIIETL 80

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            RPAI++APNK LAAQLY E K+FF +N+VEYFVSYYDYY PEAYVPR+DTYIEKESSIN
Sbjct: 81  NRPAIILAPNKTLAAQLYGEMKSFFANNSVEYFVSYYDYYTPEAYVPRSDTYIEKESSIN 140

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           EQIDRMRHSATRSLLE++D I+VSSVSCIYG+GS ESYS+M       ++ E++ ++  L
Sbjct: 141 EQIDRMRHSATRSLLEKDDVIIVSSVSCIYGLGSAESYSKMTFTFIKNENYERENIIKGL 200

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           ++ QYKR D    RGTFRV G++IEIFPSHLED AW++S+    +  I EF PLTG K  
Sbjct: 201 IELQYKRNDQNFQRGTFRVRGENIEIFPSHLEDRAWKLSLDEGKLVSIKEFDPLTGDKTE 260

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           N+  IK+YANSHY+TPRPT+N A+K I+EEL++ + +   E +LLEAQR+E+R  +DLEM
Sbjct: 261 NLNIIKVYANSHYITPRPTVNQAIKQIREELRLTIDKFRGENKLLEAQRIEERTRFDLEM 320

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           +E TGSC  IENYSR+L+GRN GEPPPTLFEY+P+++L+FVDESHVT+PQ++GMY+GD+ 
Sbjct: 321 IEATGSCSGIENYSRFLSGRNKGEPPPTLFEYLPDNALVFVDESHVTVPQLNGMYKGDYT 380

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL++YGFRLPSCMDNRPL+FEEW+ +RP T+ VSATPG WE+EQ +G+  EQIIRPT
Sbjct: 381 RKKTLSDYGFRLPSCMDNRPLKFEEWDLMRPQTVFVSATPGHWEMEQTKGVFAEQIIRPT 440

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL DP VEIR A+ QV+D+ +E     ++  R+L+T LTK+MAEDLTEY  E  I+VRYM
Sbjct: 441 GLTDPEVEIRPAKNQVDDLLNECQGIIKKEQRVLVTTLTKKMAEDLTEYFDENGIKVRYM 500

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPEC LVAILDADKEGFLRS+TSL+
Sbjct: 501 HSDIDTLERIEIIRDLRLGHFDVLVGINLLREGLDIPECSLVAILDADKEGFLRSETSLV 560

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV  KVILYAD  TKSI  AI+ET RRR KQ E+NKK+NI   S+K++I ++
Sbjct: 561 QTIGRAARNVEGKVILYADKKTKSITKAIEETDRRRTKQQEYNKKNNICASSIKKEIGDI 620

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           ++ +  +D       ++  + +      K H+K+L+K M  AADNL FE+AA IRDEI++
Sbjct: 621 LESVYEKDY------LNTDKFTKPGHNLKKHMKALKKDMQGAADNLEFEKAAEIRDEIRK 674

Query: 793 LKSSPYF 799
           L+ S   
Sbjct: 675 LEQSDMG 681


>gi|238898698|ref|YP_002924379.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259710328|sp|C4K6N8|UVRB_HAMD5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|229466457|gb|ACQ68231.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 671

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/659 (55%), Positives = 476/659 (72%), Gaps = 6/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ PSGDQP AI QL +G+ +    Q LLGVTGSGKTFT+A VI  + RP +++A
Sbjct: 5   FKLHSNFKPSGDQPEAIHQLKEGLKNGLMHQTLLGVTGSGKTFTVANVIADLNRPTMILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K+FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++++NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKDFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L+ L + QY R 
Sbjct: 125 SATKALLERQDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILARLSELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G++I+IFP+   D A R+ +F +++E +S F PLTG   + V    +Y
Sbjct: 185 DQVFQRGTFRVRGENIDIFPAESSDFAVRIELFDDEVERLSLFAPLTGHIQKTVPRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  +M+ IK EL  R  +L    +L+E QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRARILQSMEEIKIELAQRREQLLANNKLVEEQRLTQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTLF+Y+P + LL +DESHVTIPQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRAAGEPPPTLFDYLPSEGLLVIDESHVTIPQIGGMYKGDRSRKQTLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L P TI +SATPG +EL +  G ++EQ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEFESLAPQTIYISATPGPYELGKSAGELIEQVVRPTGLLDPVIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI        R+L+T LTKRMAEDLTEYL E+  RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEIRQRVVIDERVLVTTLTKRMAEDLTEYLAEQGERVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           N+N K ILY D IT S++ AIDET RRR+KQ  +NK+  I P+ +++KI ++++      
Sbjct: 545 NLNGKAILYGDKITVSMKKAIDETERRRKKQESYNKEKGIVPKKLEKKIRDILELGQSYT 604

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                   TT         +LS K  K  +  L ++MH  A N+ FE+A ++RDEI++L
Sbjct: 605 KGKARKRTTTLEENSTNYTALSPKAIKKKIDELEQKMHDHAQNMEFEKAGQLRDEIQQL 663


>gi|320107009|ref|YP_004182599.1| excinuclease ABC subunit B [Terriglobus saanensis SP1PR4]
 gi|319925530|gb|ADV82605.1| excinuclease ABC, B subunit [Terriglobus saanensis SP1PR4]
          Length = 662

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/659 (53%), Positives = 476/659 (72%), Gaps = 1/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ TDY P GDQP AI +L  G+   EK Q+LLGVTGSGKTFTMAKVI+ + RPA+V+A
Sbjct: 3   FQLATDYTPQGDQPRAIKELTAGLSEGEKHQVLLGVTGSGKTFTMAKVIQQVNRPALVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAY+P  D YIEKES+INE++D++R 
Sbjct: 63  HNKTLAAQLYHEFKQFFPNNAVEYFVSYYDYYQPEAYIPSGDLYIEKESTINEELDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER DCI+VSSVSCIYG+GS E+Y  M++ L+ G  ++++++   LV+  Y+R 
Sbjct: 123 SATRSLFERRDCIIVSSVSCIYGLGSPEAYYGMLLLLEKGQKIKREDITRRLVEILYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD IEI+P++ ++ A+R+ +FG++I+ +S+  PL G   +    + IY
Sbjct: 183 DNDFRRGTFRVRGDVIEIYPTY-DENAFRIELFGDEIDNLSQIDPLFGTVKQKYARLPIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV       +A + I  EL     +LEKEGR++EA R+ QR  +DLEM+++ G C 
Sbjct: 242 PKSHYVVQPERKASATESILHELSEWEAQLEKEGRMMEANRIHQRTRFDLEMIKSVGYCH 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++GR PGEPPPTL +Y P D L+F+DESHVT+PQ+ GM+ GD  RK  L +Y
Sbjct: 302 GIENYSRHMSGRLPGEPPPTLLDYFPRDFLIFIDESHVTVPQLHGMWHGDRSRKGNLVDY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+F+E+       I VSATPG +EL +  G++VEQIIRPTGL+DPP+E
Sbjct: 362 GFRLPSAMDNRPLKFDEFENRTGQIIYVSATPGPYELTKAAGVVVEQIIRPTGLIDPPIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EI   + +  R+L+T LTKRMAEDL  Y  E  ++ RYMHSE++TLE
Sbjct: 422 IRPIKGQIDDLLAEIRERSTKNERVLVTTLTKRMAEDLAGYYTEVGVKCRYMHSEIETLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++++RDLR G++DVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 482 RVKLLRDLRKGEYDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSQGSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++  + ILYAD +T S++ AIDET RRR  Q+ +N++H I P+SV   I + +  I+  D
Sbjct: 542 HLEGRAILYADKMTDSMRRAIDETDRRRATQVAYNEEHGITPKSVIRPIGDALAGIIDAD 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
            A   +  D      ++++   ++  L   M  AA    FE+AA++RD +K L++  + 
Sbjct: 602 YADITMESDGLPEFATQQELDKYISGLESDMREAAKKFEFEKAAKLRDTVKELRTKEFL 660


>gi|254447168|ref|ZP_05060635.1| excinuclease ABC, B subunit [gamma proteobacterium HTCC5015]
 gi|198263307|gb|EDY87585.1| excinuclease ABC, B subunit [gamma proteobacterium HTCC5015]
          Length = 677

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/669 (53%), Positives = 480/669 (71%), Gaps = 5/669 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +    F + + Y P+GDQPAAI  L  G  S    Q LLGVTGSGKTFTMA +++ +Q
Sbjct: 2   KQRIGKPFNIHSQYQPAGDQPAAIQNLRAGFESGLLRQTLLGVTGSGKTFTMANLVQDLQ 61

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPA+++A NK LAAQLY E K FFP N+VEYFVSYYDYYQPEAYVP +DT+IEK++++NE
Sbjct: 62  RPALILAHNKTLAAQLYGEMKEFFPENSVEYFVSYYDYYQPEAYVPSSDTFIEKDANVNE 121

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
            I++MR SAT++L+ER D ++V++VS IYG+G   SY  M++ L +GD + Q+++L  L 
Sbjct: 122 HIEQMRLSATKALMERRDVVIVATVSAIYGLGDPNSYMTMMLHLVVGDMINQRDILRRLA 181

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
           + QY R D+ + R T+RV G+ I++ P+  E  A R+ +F +++E +S F PLTG+ +R 
Sbjct: 182 ELQYTRNDMELRRATYRVRGEVIDVHPAESEREAVRIELFDDEVENLSIFDPLTGEVLRK 241

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           ++ + +Y  +HYVTPR TL   +  +K ELK RL  L    +L+EAQRLEQR  YD+EM+
Sbjct: 242 LQRVTVYPKTHYVTPRDTLVEMIDKVKAELKERLEHLRSVDKLVEAQRLEQRTMYDMEMI 301

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           +  G C  IENYSRYL+GRNPGEPPP L +Y+P+D+L+ +DESHVT+ Q+  MY+GD  R
Sbjct: 302 QELGYCNGIENYSRYLSGRNPGEPPPCLLDYLPDDALMIIDESHVTVSQVGAMYKGDRSR 361

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL EYGFRLPS +DNRPLRF+E+      T+ VSATPG +E E     +VEQ++RPTG
Sbjct: 362 KETLVEYGFRLPSALDNRPLRFDEFENTIGQTLFVSATPGPYEEEHADA-VVEQVVRPTG 420

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           LVDP +E+R   TQV+D+  EI+  A    R+LLT LTKRMAEDLT+YL E  ++VRY+H
Sbjct: 421 LVDPELEVRPVATQVDDLLSEIHKRAAVDERVLLTTLTKRMAEDLTDYLMEHGVKVRYLH 480

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQ
Sbjct: 481 SDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 540

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAAR+VN + ILYAD IT S+Q A+DET RRR+KQ+  N++H I P++VK  + +++
Sbjct: 541 TIGRAARHVNGRAILYADKITGSMQRAMDETERRRDKQMAFNREHGIEPKTVKRSVEDIL 600

Query: 734 DPILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           D         ++    A+Q      LS  +    ++ L K+M   A NL FEEAA++RD+
Sbjct: 601 DAGYTPGKPGSDRKKVAEQGEDYSGLSPAQASKEIEKLEKRMFEHARNLEFEEAAQLRDQ 660

Query: 790 IKRLKSSPY 798
           +  L+    
Sbjct: 661 MDTLRKQAL 669


>gi|229050827|ref|ZP_04194379.1| UvrABC system protein B [Bacillus cereus AH676]
 gi|228722483|gb|EEL73876.1| UvrABC system protein B [Bacillus cereus AH676]
          Length = 658

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/656 (54%), Positives = 480/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   E + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAEREHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL + G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNENGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|119505293|ref|ZP_01627368.1| excinuclease ABC subunit B [marine gamma proteobacterium HTCC2080]
 gi|119458984|gb|EAW40084.1| excinuclease ABC subunit B [marine gamma proteobacterium HTCC2080]
          Length = 694

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/670 (55%), Positives = 492/670 (73%), Gaps = 11/670 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + P+GDQPAAI QL +GI +    Q+LLGVTGSGKTFTMA VIE +QRP IV
Sbjct: 24  KLFEISSSFEPAGDQPAAIVQLTEGIQAGLASQILLGVTGSGKTFTMAHVIEKLQRPTIV 83

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY EFK FFP+NAVEYFVSYYDY+QPEAYVP +DT+IEK++ +N+ I++M
Sbjct: 84  MAHNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYFQPEAYVPSSDTFIEKDAQVNDHIEQM 143

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER DC+VV++VS IYG+G  E+Y +M++ L  G+ ++Q+ +L  L + QY 
Sbjct: 144 RLSATKALLEREDCLVVATVSAIYGLGDPEAYFKMVMHLSRGEIIDQRGVLRQLAELQYT 203

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RGT+RV G+ I+IFP+  +++A R+ +F  +IE IS F PLTG+    +  + 
Sbjct: 204 RNDIDFRRGTYRVRGEIIDIFPAESDELAIRIELFDEEIENISRFDPLTGEIHDKLPRVT 263

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  +HYV+ R T+  A+  I+EEL+ R+ + ++  +LLEAQR++QR  YD+EM+   G 
Sbjct: 264 IFPKTHYVSSRDTMMGAIDLIEEELEQRVKQFKEADKLLEAQRIQQRTRYDIEMIRELGF 323

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           CQ IENYSRYL+GR PGEPPPTLFEY+P ++L+ VDESHVT+PQI GMY+GD  RK TL 
Sbjct: 324 CQGIENYSRYLSGRAPGEPPPTLFEYLPSNALIMVDESHVTVPQIGGMYKGDRSRKETLV 383

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPLRFEEW  LRP  + VSATPG++ELE   G  VEQ++RPTGLVDP 
Sbjct: 384 EYGFRLPSALDNRPLRFEEWEHLRPQGVFVSATPGAYELEHT-GRTVEQVVRPTGLVDPE 442

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R ARTQV+D+  EI      G R+L+T LTKRMAEDLTE+L E ++RVRY+HS++ T
Sbjct: 443 VEVRPARTQVDDLLKEIRETVAIGDRVLVTTLTKRMAEDLTEFLSEHDVRVRYLHSDIDT 502

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQT+GRA
Sbjct: 503 VERVEIIRDLRLGQFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTMGRA 562

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           AR++  + ILYAD IT S++ A+DET RRR KQ+E N+ + I P+ +++ + ++++    
Sbjct: 563 ARHIRGRAILYADKITGSMERAMDETQRRRTKQIEFNEANGITPKGIEKSVQDILEGARR 622

Query: 735 -PILLEDAATTNISIDAQQ-----LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            P     A    ++ +        ++L+       +  L  QM   A NL FEEA RIRD
Sbjct: 623 MPTKARSAKDRRVAEEKAAYAAEVVNLTPAALARKIAQLEGQMLEHAKNLEFEEAGRIRD 682

Query: 789 EIKRLKSSPY 798
           ++  +K   +
Sbjct: 683 QLAEIKQVAF 692


>gi|229099594|ref|ZP_04230522.1| UvrABC system protein B [Bacillus cereus Rock3-29]
 gi|228683890|gb|EEL37840.1| UvrABC system protein B [Bacillus cereus Rock3-29]
          Length = 658

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/656 (53%), Positives = 478/656 (72%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++G+ S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGLDSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKIEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|169795110|ref|YP_001712903.1| excinuclease ABC subunit B [Acinetobacter baumannii AYE]
 gi|213158228|ref|YP_002320279.1| excinuclease ABC, B subunit [Acinetobacter baumannii AB0057]
 gi|215482658|ref|YP_002324854.1| excinuclease ABC, B subunit [Acinetobacter baumannii AB307-0294]
 gi|260556598|ref|ZP_05828816.1| excinuclease ABC, B subunit [Acinetobacter baumannii ATCC 19606]
 gi|301345200|ref|ZP_07225941.1| excinuclease ABC subunit B [Acinetobacter baumannii AB056]
 gi|301510962|ref|ZP_07236199.1| excinuclease ABC subunit B [Acinetobacter baumannii AB058]
 gi|301594561|ref|ZP_07239569.1| excinuclease ABC subunit B [Acinetobacter baumannii AB059]
 gi|332854010|ref|ZP_08435126.1| excinuclease ABC, B subunit [Acinetobacter baumannii 6013150]
 gi|332869710|ref|ZP_08438898.1| excinuclease ABC, B subunit [Acinetobacter baumannii 6013113]
 gi|169148037|emb|CAM85900.1| excinuclease ABC subunit B (ATP-dependent DNA excision repair
           enzyme UvrAC) [Acinetobacter baumannii AYE]
 gi|213057388|gb|ACJ42290.1| excinuclease ABC, B subunit [Acinetobacter baumannii AB0057]
 gi|213988750|gb|ACJ59049.1| excinuclease ABC, B subunit [Acinetobacter baumannii AB307-0294]
 gi|260409857|gb|EEX03157.1| excinuclease ABC, B subunit [Acinetobacter baumannii ATCC 19606]
 gi|332728292|gb|EGJ59674.1| excinuclease ABC, B subunit [Acinetobacter baumannii 6013150]
 gi|332732612|gb|EGJ63845.1| excinuclease ABC, B subunit [Acinetobacter baumannii 6013113]
          Length = 673

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/668 (55%), Positives = 480/668 (71%), Gaps = 10/668 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + T Y P+GDQP AI +L+ GI    + QLLLGVTGSGKT+TMA VI   QRP IVM
Sbjct: 6   PFDLVTHYQPAGDQPQAIEKLVNGIEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVM 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR
Sbjct: 66  AHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V + E++  LV+ QY R
Sbjct: 126 LSATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVQGDRVSRDEIIRRLVEMQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++  +RGT+R+ G+ I+IFP+  +  A R+ +F ++++ I  F PLTG+ +R V  + I
Sbjct: 186 NELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVPRVTI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  SHYVTP+  L  A+  IK+EL+ +L    +  +LLEAQR+EQR  YDLEM++  G  
Sbjct: 246 YPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYT 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+GR  GE PPTLF+Y+PED+LL +DESHVT+PQI  MY+GD  RK  L  
Sbjct: 306 NGIENYSRHLSGRPAGEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVN 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP++FEEW  + PTTI VSATP  +ELE+ +  +VEQ++RPTGL+DP +
Sbjct: 366 YGFRLPSALDNRPMKFEEWERIVPTTIFVSATPARYELEKSEQ-VVEQVVRPTGLIDPEI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+DV  EIN+      R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T+
Sbjct: 425 EVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++II +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  K ILYADTIT S++ AIDET RRR KQ+E N++H I P+S   + ++ ID   + 
Sbjct: 545 RNVKGKAILYADTITDSMRKAIDETERRRTKQIEFNEQHGITPRSAVRQAVKEIDTGEVL 604

Query: 740 DAATTNISIDAQQLSLSKKKG---------KAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                +  +  Q  +LS  +            H+  L K+M  A+ +L FE+AARIRDEI
Sbjct: 605 SDDQIDEKVLEQAQALSADERHILSDPKLFSKHITKLEKEMLKASKDLQFEQAARIRDEI 664

Query: 791 KRLKSSPY 798
            RLK+   
Sbjct: 665 VRLKAQML 672


>gi|168210416|ref|ZP_02636041.1| excinuclease ABC, B subunit [Clostridium perfringens B str. ATCC
           3626]
 gi|170711521|gb|EDT23703.1| excinuclease ABC, B subunit [Clostridium perfringens B str. ATCC
           3626]
          Length = 659

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/659 (53%), Positives = 472/659 (71%), Gaps = 2/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++Q+ + P+GDQP AI  L++ I +  + Q LLGVTGSGKTFTMA +IE  Q+P +
Sbjct: 1   MGEFKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID+
Sbjct: 61  ILAHNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  L++ QY
Sbjct: 121 LRHSATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD+++I PS       R+  FG++I+ I EF  LTG  I   + +
Sbjct: 181 ERNDIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I   SH+     TL  +++ I++EL+ RL  L  E ++LEAQRL+QR  YD+EM+   G
Sbjct: 241 SITPASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+  MY GD  RK +L
Sbjct: 301 YCQGIENYSRILDGRIPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLP   DNRPL+F E+       + VSATPG +EL+  + I+ EQIIRPTGL+DP
Sbjct: 361 VEFGFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSE-IVAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR  + Q++D+Y EI    Q+G R+L+T LTKRMAEDLT+YL + N++  YMHS++ 
Sbjct: 420 VIEIRPIQGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++IIR+LRLG+ DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+YAD ITKS+  +I ET RRR  Q+E+N++HNI P +V + + ++I+   
Sbjct: 540 AARNSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + +    N   + ++ +      +  ++   ++M  AA NL FE AA +RD IK LK +
Sbjct: 600 VSEEKE-NYETEVKKAAKKDIPVEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDLKEN 657


>gi|50085644|ref|YP_047154.1| excinuclease ABC subunit B [Acinetobacter sp. ADP1]
 gi|81827402|sp|Q6F9D2|UVRB_ACIAD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|49531620|emb|CAG69332.1| excinuclease ABC subunit B (ATP-dependent DNA excision repair
           enzyme UvrAC) [Acinetobacter sp. ADP1]
          Length = 675

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/671 (54%), Positives = 483/671 (71%), Gaps = 10/671 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D   F + T+Y P+GDQP AI +L+ GI    + QLLLGVTGSGKT+TMA VI   QRP 
Sbjct: 5   DNQPFDLVTNYQPAGDQPQAIKKLVSGIEQGNRNQLLLGVTGSGKTYTMANVIAQTQRPT 64

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IVMA NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID
Sbjct: 65  IVMAHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHID 124

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SATR+LLER D I+V+SVS IYG+G  E+Y +M++ +  GD + + +L+  LV+ Q
Sbjct: 125 QMRLSATRALLERRDAIIVASVSAIYGLGDPEAYMKMLLHVVEGDRINRDDLIRRLVEMQ 184

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R ++  +RGT+R+ G+ +++FP+  +  A R+ +F ++++ I  F PLTG+  R V  
Sbjct: 185 YTRNELEFLRGTYRIRGEILDVFPAESDQFAIRIELFDDEVDSIRWFDPLTGKMQRKVPR 244

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           + IY  SHYVTP+  L+ A++ IK+EL+ +L    +  +LLEAQR+EQR  YDLEM++  
Sbjct: 245 VTIYPKSHYVTPKDNLSRAIETIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQL 304

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G    IENYSR+L+GR+PG  PPTLF+YIPED+LL +DESHVT+PQI  MY+GD  RK  
Sbjct: 305 GYTNGIENYSRHLSGRSPGAAPPTLFDYIPEDALLIIDESHVTVPQIGAMYKGDRSRKEN 364

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRP++FEEW  + PTT+ VSATP  +ELE+    IVEQ++RPTGL+D
Sbjct: 365 LVNYGFRLPSALDNRPMKFEEWERIVPTTVFVSATPAKYELEKSDQ-IVEQVVRPTGLID 423

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EIR   TQV+DV  EIN+  +   R+L+T LTKRMAEDLT YL E  ++V Y+HS++
Sbjct: 424 PEIEIRPVLTQVDDVLSEINIRKEMDERVLITTLTKRMAEDLTSYLKEYGVKVAYLHSDI 483

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER++II +LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 484 DTVERVKIIHELRTGVYDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 543

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN+  K ILYAD +T S+Q AIDET RRREKQ+E NK H I P+S   + ++ ID  
Sbjct: 544 RAARNIKGKAILYADRMTDSMQKAIDETERRREKQIEFNKIHGITPRSAVRQKVKEIDTG 603

Query: 737 LLEDAATTNISIDAQQLSLSKKKG---------KAHLKSLRKQMHLAADNLNFEEAARIR 787
            + +       I  Q  +LS  +            H+  L K+M  A+  L FE+AAR+R
Sbjct: 604 EVFNDDDIEGKISEQARALSADERHILADPKLFAKHMSKLEKEMLKASKELQFEQAARLR 663

Query: 788 DEIKRLKSSPY 798
           DEI RLK+   
Sbjct: 664 DEILRLKAQML 674


>gi|116670617|ref|YP_831550.1| excinuclease ABC subunit B [Arthrobacter sp. FB24]
 gi|189037971|sp|A0JWN0|UVRB_ARTS2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|116610726|gb|ABK03450.1| Excinuclease ABC subunit B [Arthrobacter sp. FB24]
          Length = 693

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/682 (50%), Positives = 469/682 (68%), Gaps = 18/682 (2%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
              ++ +  F++ +++ P+GDQPAAIA+L + I + EK  +LLG TG+GK+ T A +IE 
Sbjct: 5   QEINRVVAPFEVISEFKPAGDQPAAIAELTERIKNGEKDVVLLGATGTGKSATTAWLIEQ 64

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +QRP +VM  NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYV +TDT+IEK+SS+
Sbjct: 65  VQRPTLVMVQNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVAQTDTFIEKDSSV 124

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           NE+++R+RHSAT +LL R D IVV++VSCIYG+G+ E Y   +V L+ G  + + +LL  
Sbjct: 125 NEEVERLRHSATNALLTRRDVIVVATVSCIYGLGTPEEYIAGMVTLRKGAEMNRDDLLRK 184

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
            V  QY R D+   RGTFRV GD++EI P + E++A R+  FG++IE I   +PLTG+ I
Sbjct: 185 FVSMQYARNDMDFHRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIENIHTLHPLTGEVI 243

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
           R+ E + ++  SHYV     ++ A+K I++EL  RL  LE + +L+EAQRL  R TYDLE
Sbjct: 244 RDEEEMYVFPASHYVAGPERMSRAIKRIEDELAERLQVLESQNKLVEAQRLRMRTTYDLE 303

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M++  G C  IENYS ++ GR  G  P  L +Y P+D LL +DESHVT+PQI  MY GD 
Sbjct: 304 MMQQMGFCNGIENYSSHIDGRARGTAPHCLLDYFPDDFLLVIDESHVTVPQIGAMYEGDM 363

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK  L ++GFRLPS MDNRPL+++E+      T+ +SATPG +EL +  G  V+QIIRP
Sbjct: 364 SRKRNLVDFGFRLPSAMDNRPLKWDEFQERVGQTVYLSATPGKYELGKSDG-FVQQIIRP 422

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP V ++  + Q++D+  EI     +  R+L+T LTKRMAEDLT+YL    ++V Y
Sbjct: 423 TGLIDPEVVVKPTKGQIDDLLGEIKTRTAKNERVLVTTLTKRMAEDLTDYLLGHGVKVEY 482

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS+V TL R+E++R+LR+G FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS TSL
Sbjct: 483 LHSDVDTLRRVELLRELRMGVFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSL 542

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARNV+ +V +YAD IT S+  AIDET RRR  Q+ +N +H I+PQ +++KI +
Sbjct: 543 IQTIGRAARNVSGQVHMYADRITDSMAHAIDETNRRRAIQVAYNTEHGIDPQPLRKKIAD 602

Query: 732 VIDPILLEDAATTNISIDAQQ----------------LSLSKKKGKAHLKSLRKQMHLAA 775
           + D +  EDA T  +   + +                 +   +     ++ L +QMH AA
Sbjct: 603 ITDQLAKEDADTRELLAASGKTRGKGKGASTVRADGLAAAPAEDLVGLIEQLTEQMHAAA 662

Query: 776 DNLNFEEAARIRDEIKRLKSSP 797
             L FE AAR+RDE+  LK   
Sbjct: 663 GELQFELAARLRDEVGELKKEL 684


>gi|260551513|ref|ZP_05825697.1| excinuclease ABC subunit B [Acinetobacter sp. RUH2624]
 gi|260405507|gb|EEW99000.1| excinuclease ABC subunit B [Acinetobacter sp. RUH2624]
          Length = 673

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/668 (55%), Positives = 477/668 (71%), Gaps = 10/668 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + T Y P+GDQP AI +L+ G+    + QLLLGVTGSGKT+TMA VI   QRP IVM
Sbjct: 6   PFDLVTHYQPAGDQPQAIEKLVNGVEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVM 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR
Sbjct: 66  AHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V + E++  LV+ QY R
Sbjct: 126 LSATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVQGDRVSRDEIIRRLVEMQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++  +RGT+R+ G+ I+IFP+  +  A R+ +F ++++ I  F PLTG+ +R V  + I
Sbjct: 186 NELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVPRVTI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  SHYVTP+  L  A+  IK+EL+ +L    +  +LLEAQR+EQR  YDLEM++  G  
Sbjct: 246 YPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYT 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+GR  GE PPTLF+Y+P+D+LL +DESHVT+PQI  MY+GD  RK  L  
Sbjct: 306 NGIENYSRHLSGRPAGEAPPTLFDYVPDDALLIIDESHVTVPQIGAMYKGDRSRKENLVN 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP++FEEW  + PTTI VSATP  +ELE+ +  +VEQ++RPTGL+DP +
Sbjct: 366 YGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAKYELEKSEQ-VVEQVVRPTGLIDPEI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+DV  EIN+      R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T+
Sbjct: 425 EVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++II +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  K ILYAD IT S+Q AIDET RRR KQ+E N+ H I P+S   + ++ ID   + 
Sbjct: 545 RNVKGKAILYADRITDSMQKAIDETERRRAKQIEFNELHGITPRSAVRQAVKEIDTGEVL 604

Query: 740 DAATTNISIDAQQLSLSKKKG---------KAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                +  I  Q  +LS               H+  L K+M  A+ +L FE+AARIRDEI
Sbjct: 605 SDDQIDEKILEQAQALSADDRHILSDPKLFSKHITKLEKEMLKASKDLQFEQAARIRDEI 664

Query: 791 KRLKSSPY 798
            RLK+   
Sbjct: 665 VRLKAQML 672


>gi|77458102|ref|YP_347607.1| excinuclease ABC subunit B [Pseudomonas fluorescens Pf0-1]
 gi|90111048|sp|Q3KF38|UVRB_PSEPF RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|77382105|gb|ABA73618.1| excinuclease ABC subunit B [Pseudomonas fluorescens Pf0-1]
          Length = 671

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/670 (53%), Positives = 481/670 (71%), Gaps = 10/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI  +++GI +    Q LLGVTGSGKTF++A VI  +QRP +
Sbjct: 1   MSEFQLVTRFDPAGDQPEAIRLMVEGIEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ L+  L   QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALVRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+I+P+  +  A R+ +F +++E IS F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESISAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  A++ IK EL+ RL  L    +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLLDAIEGIKVELQERLEYLRNNNKLVEAQRLEQRTRFDLEMILELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G  PPTL++Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPAGAAPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G ++EQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEGVSPQTIFVSATPGNYEAEHA-GRVIEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R A TQV+D+  EI        R+L+T LTKRMAEDLT+YL +  +RVRY+HS++ 
Sbjct: 420 QVEVRPALTQVDDLLSEITKRVAVEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILYAD IT S++ AI ET RRR+KQ+  N  + I P+ V + + ++++   
Sbjct: 540 AARNLNGRAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVFKDVADIMEGAT 599

Query: 738 LED---------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +           A     +   +    S  +    ++ L ++M+  A +L FE AA++RD
Sbjct: 600 VPGSRSKKRKGMAKAAEENAKYEAELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQMRD 659

Query: 789 EIKRLKSSPY 798
           EI +L+    
Sbjct: 660 EIAKLRERLL 669


>gi|227535570|ref|ZP_03965619.1| excision endonuclease subunit UvrB [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227186817|gb|EEI66884.1| excision endonuclease subunit UvrB [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 673

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/659 (52%), Positives = 458/659 (69%), Gaps = 4/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AIA+L KG    +K Q+LLG TG+GKTFTM+ +I  + +P ++++
Sbjct: 12  FDLVSPYQPAGDQPQAIAKLTKGFEEGKKEQILLGATGTGKTFTMSNIIANLNKPTLILS 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH
Sbjct: 72  HNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVS I+G+G    Y   ++ L+ G ++++  LL  LV  Q+ R 
Sbjct: 132 SATSALLERNDVIVVASVSSIFGLGDPHEYKNHVLSLRTGMTIDRNTLLRQLVDIQFDRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  +D A RV  FG++I+ I+E   LTG+ I   + + I+
Sbjct: 192 DIDFQRGRFRVRGDVVEIFPASRDDHAIRVEFFGDEIDRITEVDALTGEVIGTRDHVAIF 251

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I  EL+ +L  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 252 PATHFMTSDEQMQRAIKSIAAELEAQLKVLRSENKLLEAQRLEQRTNYDIEMMREMGFTS 311

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGEPP TL ++ P+D  + VDESHVT+PQI GMY GD  RK  L  Y
Sbjct: 312 GIENYSRHMDGRKPGEPPYTLLDFFPKDFNIMVDESHVTMPQIRGMYNGDRARKQMLVNY 371

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+  E+       + VSATPG +EL++  +  I EQIIRPTGL+DP +
Sbjct: 372 GFRLPSALDNRPLKINEFEQHVHRILYVSATPGPYELDRVPKDDIAEQIIRPTGLLDPKI 431

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EIN       R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTL
Sbjct: 432 EVRPVMGQIDDLVGEINKRVDAHERVFITTLTKKMAEDLTDYLKDMGIKVRYLHSDIKTL 491

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +IIRDLRLGKFDVL+GINLLREG+D+PE  L+AILDADKEGFLR++ SLIQTIGRA+
Sbjct: 492 ERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRAERSLIQTIGRAS 551

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN + KVI+YAD +T S++ AIDET RRR  Q + N++H+I P+++ + I   I      
Sbjct: 552 RNEHGKVIMYADKVTDSMKAAIDETQRRRTIQEKFNEEHHITPKTIIKPIRAAISSYEQS 611

Query: 740 DAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           D           +     +SK   K  + +LR QM  AA  L+FE+AA +RD I  L++
Sbjct: 612 DDDKAEAKKTFAEVDYEDMSKADKKELVANLRSQMQAAAKKLDFEQAASLRDTILELQA 670


>gi|42784318|ref|NP_981565.1| excinuclease ABC subunit B [Bacillus cereus ATCC 10987]
 gi|81830915|sp|Q72XV1|UVRB_BACC1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|42740249|gb|AAS44173.1| excinuclease ABC, B subunit [Bacillus cereus ATCC 10987]
 gi|324329109|gb|ADY24369.1| excinuclease ABC subunit B [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 658

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 480/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+++AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMEIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|116494463|ref|YP_806197.1| excinuclease ABC subunit B [Lactobacillus casei ATCC 334]
 gi|191637848|ref|YP_001987014.1| excinuclease ABC subunit B [Lactobacillus casei BL23]
 gi|301065973|ref|YP_003787996.1| helicase subunit of the DNA excision repair complex [Lactobacillus
           casei str. Zhang]
 gi|122264111|sp|Q03AL7|UVRB_LACC3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238693024|sp|B3WCQ5|UVRB_LACCB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|116104613|gb|ABJ69755.1| Excinuclease ABC subunit B [Lactobacillus casei ATCC 334]
 gi|190712150|emb|CAQ66156.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
           [Lactobacillus casei BL23]
 gi|300438380|gb|ADK18146.1| Helicase subunit of the DNA excision repair complex [Lactobacillus
           casei str. Zhang]
 gi|327381915|gb|AEA53391.1| Excinuclease ABC subunit B [Lactobacillus casei LC2W]
 gi|327385076|gb|AEA56550.1| Excinuclease ABC subunit B [Lactobacillus casei BD-II]
          Length = 671

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/659 (52%), Positives = 458/659 (69%), Gaps = 4/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AIA+L KG    +K Q+LLG TG+GKTFTM+ +I  + +P ++++
Sbjct: 10  FDLVSPYQPAGDQPQAIAKLTKGFEEGKKEQILLGATGTGKTFTMSNIIANLNKPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVS I+G+G    Y   ++ L+ G ++++  LL  LV  Q+ R 
Sbjct: 130 SATSALLERNDVIVVASVSSIFGLGDPHEYKNHVLSLRTGMTIDRNTLLRQLVDIQFDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  +D A RV  FG++I+ I+E   LTG+ I   + + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDDHAIRVEFFGDEIDRITEVDALTGEVIGTRDHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I  EL+ +L  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFMTSDEQMQRAIKSIAAELEAQLKVLRSENKLLEAQRLEQRTNYDIEMMREMGFTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGEPP TL ++ P+D  + VDESHVT+PQI GMY GD  RK  L  Y
Sbjct: 310 GIENYSRHMDGRKPGEPPYTLLDFFPKDFNIMVDESHVTMPQIRGMYNGDRARKQMLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+  E+       + VSATPG +EL++  +  I EQIIRPTGL+DP +
Sbjct: 370 GFRLPSALDNRPLKINEFEQHVHRILYVSATPGPYELDRVPKDDIAEQIIRPTGLLDPKI 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EIN       R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTL
Sbjct: 430 EVRPVMGQIDDLVGEINKRVDAHERVFITTLTKKMAEDLTDYLKDMGIKVRYLHSDIKTL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +IIRDLRLGKFDVL+GINLLREG+D+PE  L+AILDADKEGFLR++ SLIQTIGRA+
Sbjct: 490 ERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRAERSLIQTIGRAS 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN + KVI+YAD +T S++ AIDET RRR  Q + N++H+I P+++ + I   I      
Sbjct: 550 RNEHGKVIMYADKVTDSMKAAIDETQRRRTIQEKFNEEHHITPKTIIKPIRAAISSYEQS 609

Query: 740 DAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           D           +     +SK   K  + +LR QM  AA  L+FE+AA +RD I  L++
Sbjct: 610 DDDKAEAKKTFAEVDYEDMSKADKKELVANLRSQMQAAAKKLDFEQAASLRDTILELQA 668


>gi|294617428|ref|ZP_06697062.1| excinuclease ABC, B subunit [Enterococcus faecium E1679]
 gi|291596334|gb|EFF27593.1| excinuclease ABC, B subunit [Enterococcus faecium E1679]
          Length = 664

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/656 (53%), Positives = 471/656 (71%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL+ G+   +K Q+LLG TG+GKT+T++ +IE + +P +++A
Sbjct: 10  FELVSKYQPAGDQPEAINQLVDGVVGGKKAQILLGATGTGKTYTISNLIEKVNKPTLIIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IV++SVSCI+G+GS   Y + +V ++ G  +++ +L+  LV  Q++R 
Sbjct: 130 SATSSLLERNDVIVIASVSCIFGLGSPFEYQKQVVSIRQGAELDRNQLIRDLVSIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV G+ +EIFP+  ++ A RV  FG+++E I E   LTG+ +   E + I+
Sbjct: 190 DIDFQRGRFRVRGNVVEIFPASRDERALRVEFFGDEVERIREVNALTGEVLGETEHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK EL+ RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFVTNDEHMEHAVANIKAELEQRLTVLRNENKLLEAQRLEQRTNYDIEMMLEMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ PED L+  DESHVT+PQI GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRKEGEPPYTLLDFFPEDFLIVADESHVTMPQIRGMYNGDRARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       I VSATPG +E EQ    +++QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRLEEFEKHVNQIIYVSATPGPYEHEQT-DTVIQQIIRPTGLLDPVIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 429 VRPIMGQIDDLVGEINERVEKDQRVFVTTLTKKMAEDLTDYFKELGIKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 489 RTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD +T S++LA+DET+RRR  Q ++N++H I P+++ ++I ++I  I  E 
Sbjct: 549 NEEGKVIMYADKVTDSMRLAMDETSRRRTIQQKYNEEHGIVPKTIIKEIRDLI-SITKES 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  ++      ++K++    L  L K+M  AA  L+FE AA +RD I  LK+S
Sbjct: 608 EDDTKEAVQVSYEEMTKEEKDTLLMKLEKEMKDAAKALDFETAANVRDMILELKAS 663


>gi|226951486|ref|ZP_03821950.1| excinuclease ABC subunit B (ATP-dependent DNA excision repair
           enzyme UvrAC) [Acinetobacter sp. ATCC 27244]
 gi|226837779|gb|EEH70162.1| excinuclease ABC subunit B (ATP-dependent DNA excision repair
           enzyme UvrAC) [Acinetobacter sp. ATCC 27244]
          Length = 680

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/672 (55%), Positives = 482/672 (71%), Gaps = 10/672 (1%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
              +    F++ T+Y P+GDQP AI +L+ GI    + QLLLGVTGSGKT+TMA VI   
Sbjct: 5   QEQETGQPFELVTNYQPAGDQPQAIEKLVNGIEHGFRNQLLLGVTGSGKTYTMANVIAKT 64

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP IVMA NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN
Sbjct: 65  QRPTIVMAHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAIN 124

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ID+MR SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V + +++  L
Sbjct: 125 DHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHIVQGDRVSRDDIIRRL 184

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V+ QY R ++  +RGT+R+ G+ I+IFP+  +  A RV +F ++++ I  F PLTG+ +R
Sbjct: 185 VEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQDAIRVELFDDEVDSIRWFDPLTGKLVR 244

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V  + IY  SHYVTP+  L  A+  IK+ELK +L   +   +LLEAQR+EQR  YDLEM
Sbjct: 245 KVPRVTIYPKSHYVTPKDHLTRAIDTIKDELKDQLKFFKDNDKLLEAQRIEQRTRYDLEM 304

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           ++  G    IENYSR+L+GR  GE PPTLF+Y+PED+LL +DESHVT+PQI  MY+GD  
Sbjct: 305 MQQLGYTNGIENYSRHLSGRTAGEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRS 364

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L  YGFRLPS +DNRP++FEEW  + PTT+ VSATP  +ELE+ +  +VEQ++RPT
Sbjct: 365 RKENLVNYGFRLPSALDNRPMKFEEWERIVPTTVFVSATPALYELEKSEQ-VVEQVVRPT 423

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP +E+R   TQV+DV  EIN+  Q   R+L+T LTKRMAEDLT YL E  ++V Y+
Sbjct: 424 GLIDPEIEVRPVLTQVDDVLSEINIRRQLHERVLVTTLTKRMAEDLTSYLKEYGVKVAYL 483

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++ T+ER++II +LR G  DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLI
Sbjct: 484 HSDIDTVERVKIIHELRTGVHDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 543

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS-VKEKIME 731
           QTIGRAARNV  K ILYAD IT S++ AIDET RRR KQ+E N+ H I P+S V++ I E
Sbjct: 544 QTIGRAARNVKGKAILYADRITDSMRKAIDETDRRRNKQIEFNELHGITPRSAVRQTIKE 603

Query: 732 VIDPILLEDAATTN--------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
           +    +L D             IS D Q L    K    H+  L K+M  A+  L FE+A
Sbjct: 604 IDTGEVLSDDEIDENALQQAQSISADEQHLLSDPKLFAKHIGKLEKEMLKASKELQFEQA 663

Query: 784 ARIRDEIKRLKS 795
           AR+RDEI RLK+
Sbjct: 664 ARLRDEIVRLKA 675


>gi|196033206|ref|ZP_03100619.1| excinuclease ABC, B subunit [Bacillus cereus W]
 gi|206976848|ref|ZP_03237751.1| excinuclease ABC, B subunit [Bacillus cereus H3081.97]
 gi|217962646|ref|YP_002341220.1| excinuclease ABC subunit B [Bacillus cereus AH187]
 gi|222098620|ref|YP_002532678.1| excinuclease abc subunit b [Bacillus cereus Q1]
 gi|229141893|ref|ZP_04270419.1| UvrABC system protein B [Bacillus cereus BDRD-ST26]
 gi|195994635|gb|EDX58590.1| excinuclease ABC, B subunit [Bacillus cereus W]
 gi|206744983|gb|EDZ56387.1| excinuclease ABC, B subunit [Bacillus cereus H3081.97]
 gi|217065785|gb|ACJ80035.1| excinuclease ABC, B subunit [Bacillus cereus AH187]
 gi|221242679|gb|ACM15389.1| UvrABC system protein B (excinuclease ABC, subunit B) [Bacillus
           cereus Q1]
 gi|228641508|gb|EEK97813.1| UvrABC system protein B [Bacillus cereus BDRD-ST26]
          Length = 658

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|228930166|ref|ZP_04093175.1| UvrABC system protein B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228829451|gb|EEM75079.1| UvrABC system protein B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 658

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|182624512|ref|ZP_02952295.1| excinuclease ABC, B subunit [Clostridium perfringens D str.
           JGS1721]
 gi|177910320|gb|EDT72701.1| excinuclease ABC, B subunit [Clostridium perfringens D str.
           JGS1721]
          Length = 659

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/659 (53%), Positives = 471/659 (71%), Gaps = 2/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++Q+ + P+GDQP AI  L++ I +  + Q LLGVTGSGKTFTMA +IE  Q+P +
Sbjct: 1   MGEFKIQSKFKPTGDQPKAIDTLVQSIENGNRGQTLLGVTGSGKTFTMANIIERTQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL +EFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID+
Sbjct: 61  ILAHNKTLAAQLCAEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  L++ QY
Sbjct: 121 LRHSATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRPGMIKDRDEVIKKLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD+++I PS       R+  FG++I+ I EF  LTG  I   + +
Sbjct: 181 ERNDIDFARGTFRVRGDNLDIIPSSSSSKGIRIEFFGDEIDRIREFDVLTGNIIGERQHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I   SH+     TL  +++ I++EL+ RL  L  E ++LEAQRL+QR  YD+EM+   G
Sbjct: 241 SITPASHFAASEETLEKSIRVIEDELEDRLKVLTAEDKILEAQRLKQRTNYDIEMIREMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR L GR PG PP TL +Y PED L+F+DESHVT+PQ+  MY GD  RK +L
Sbjct: 301 YCQGIENYSRILDGRMPGTPPQTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKTSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLP   DNRPL+F E+       + VSATPG +EL+  + I+ EQIIRPTGL+DP
Sbjct: 361 VEFGFRLPCAFDNRPLKFSEFESKINQVVFVSATPGEYELDHSE-IVAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR    Q++D+Y EI    Q+G R+L+T LTKRMAEDLT+YL + N++  YMHS++ 
Sbjct: 420 VIEIRPIHGQIDDLYGEIQRTVQRGFRVLITTLTKRMAEDLTKYLKDLNVKATYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++IIR+LRLG+ DVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERMKIIRELRLGEVDVLIGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+YAD ITKS+  +I ET RRR  Q+E+N++HNI P +V + + ++I+   
Sbjct: 540 AARNSESKVIMYADNITKSMDKSIKETERRRVIQMEYNEEHNITPTTVIKGVRDIIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + +    N   + ++ +      +  ++   ++M  AA NL FE AA +RD IK LK +
Sbjct: 600 VSEEKE-NYEDEVKKAAKKDIPVEKLIEQYEEEMKEAAKNLQFERAAELRDIIKDLKEN 657


>gi|52145209|ref|YP_086431.1| excinuclease ABC subunit B [Bacillus cereus E33L]
 gi|81824124|sp|Q631I6|UVRB_BACCZ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|51978678|gb|AAU20228.1| UvrABC system protein B (excinuclease ABC, subunit B) [Bacillus
           cereus E33L]
          Length = 658

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N+++ I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRSIQEAYNEEYGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 EPETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|313888540|ref|ZP_07822206.1| excinuclease ABC, B subunit [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845426|gb|EFR32821.1| excinuclease ABC, B subunit [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 653

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/652 (54%), Positives = 467/652 (71%), Gaps = 1/652 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L +GI    K Q LLGVTGSGKTFTMA VIE +Q+P +V+A
Sbjct: 3   FKIHSEYKPTGDQPQAIDKLTEGIKKGYKHQNLLGVTGSGKTFTMANVIERVQKPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL SE K FFP NAVE+FVSYYDYYQPEAYVP TDT+IEK+SSIN++ID++RH
Sbjct: 63  HNKTLAYQLCSELKEFFPENAVEFFVSYYDYYQPEAYVPGTDTFIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G    Y ++ + L+ G   ++ E++S LV  QY R 
Sbjct: 123 SATMALFERKDVIIVASVSCIYGLGDPIDYEKLAISLRPGMIRDRNEVMSKLVDIQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD +EIFP+   + + RV  FG++I+ I+E   LTGQ +  +    I 
Sbjct: 183 DYEFKRGTFRVRGDILEIFPASSSENSIRVEFFGDEIDRITEVNALTGQVLHYLNHAYIT 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T    +  A+  I+EEL+ RL  L+ + +LLEAQRLEQR  YDLEML   G C 
Sbjct: 243 PASHFATSEEKVKRAIVTIEEELEERLKVLKDQEKLLEAQRLEQRTRYDLEMLSEMGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PG  P TL +Y P+D L  +DESH TIPQI GMY GD  RK TL EY
Sbjct: 303 GIENYSRHLSGRAPGSRPYTLIDYFPKDFLTIIDESHQTIPQIRGMYNGDRARKETLVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF E+  +    + VSATPG +ELE  +   VEQIIRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLRFNEFEEMMNQCVYVSATPGPYELEHTEQE-VEQIIRPTGLLDPIIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+ +E+N A ++  R+L+T LTKRM+EDL+ +L E   ++ YMHS+V TLE
Sbjct: 422 VRPIKNQIDDIINEVNGAIEREERVLITTLTKRMSEDLSRHLKEIGYKITYMHSDVDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGK DVLVGINLLREGLD+PE   V ILDADKEGFLRS TSLIQT GRAAR
Sbjct: 482 RMKIIRDLRLGKVDVLVGINLLREGLDLPEVSRVCILDADKEGFLRSVTSLIQTAGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YADTIT S+Q+ IDET+RRR+ Q E+N++H I P+++ + + EVI+  +  +
Sbjct: 542 NAGGKVIMYADTITPSMQVTIDETSRRRKIQEEYNEEHGITPKTIVKSVREVINTAIAAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +     I  ++   +K +    + +L+ +M+ AA+ L+FE+AA IRD+IK 
Sbjct: 602 ESIDFKDIKDEENEFTKDEINEMIDALKPEMYRAAEELDFEKAAEIRDKIKD 653


>gi|261253549|ref|ZP_05946122.1| excinuclease ABC subunit B [Vibrio orientalis CIP 102891]
 gi|260936940|gb|EEX92929.1| excinuclease ABC subunit B [Vibrio orientalis CIP 102891]
          Length = 676

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/671 (54%), Positives = 484/671 (72%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + +DY PSGDQP AI QLL+G+ S    Q LLGVTGSGKTFT+A VI + QRPAI+
Sbjct: 3   KVFDLVSDYQPSGDQPTAIRQLLEGLDSGLAHQTLLGVTGSGKTFTLANVIASAQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  ESY QM++ ++ GD ++Q+++L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHIRRGDVMDQRDILRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RG FRV G+ I+IFP+  +  A R+ MF ++I+ IS F PLTG    R++   
Sbjct: 183 RNDVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEIDCISVFDPLTGAVKQRDLARY 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK EL+ R   L    +LLE QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPRERILAAVEEIKLELESRKKYLLDNNKLLEEQRISQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRP++FEE+  + P TI VSATPG++ELE+  G I +Q++RPTGL+DP
Sbjct: 363 VEFGFRLPSALDNRPMKFEEFESISPQTIFVSATPGNYELEKSDGEIADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL E +++VRY+HS++ 
Sbjct: 423 ELEVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAEDLTEYLTEHDVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+  K ILYAD+ITKS++ A+ ET+RRREKQ E+N K  I PQ++K  I ++++   
Sbjct: 543 AARNIAGKAILYADSITKSMEKAMGETSRRREKQQEYNAKLGIEPQALKRNIKDIMELGD 602

Query: 738 LEDAATTNISI----------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           +        S                 ++ ++    +  L  QM+  A +L FE AA+ R
Sbjct: 603 IAKGKKQRTSKAVPLSKVAEPSQSYDVMTPQQLDKEISKLEAQMYQHAQDLEFELAAQKR 662

Query: 788 DEIKRLKSSPY 798
           D+I +L+S   
Sbjct: 663 DQIDKLRSQFI 673


>gi|85712417|ref|ZP_01043466.1| excinuclease ABC subunit B [Idiomarina baltica OS145]
 gi|85693695|gb|EAQ31644.1| excinuclease ABC subunit B [Idiomarina baltica OS145]
          Length = 676

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/668 (55%), Positives = 489/668 (73%), Gaps = 11/668 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI ++L+ + +    Q LLGVTGSGKTFTMA VI   QRP +++A
Sbjct: 5   FELISSYQPAGDQPAAIEKILENLDAGLAHQTLLGVTGSGKTFTMANVIAQSQRPTLILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++SIN+ I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++V+SVS IYG+G  ESY +M++ L+ GD ++Q+++L  L + QYKR 
Sbjct: 125 SATKALMERRDVVLVASVSAIYGLGDPESYMKMMLHLRRGDIIDQRDILRRLAQLQYKRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIKI 379
           D    RGT+RV G+ I+IFP+  E++A RV +F N+++ IS F PLTGQ    +V    I
Sbjct: 185 DAAFERGTYRVRGEVIDIFPAESEELAVRVELFDNEVDRISFFEPLTGQVTEADVARATI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  L  A++ IK+ELK R   L K+ +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPREVLVEAIEKIKDELKDRRDVLLKQNKLLEEQRINQRTQFDIEMMLELGYC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR PGEPPPTL +Y+P+D+LL +DESHVT+ Q+  MY+GD  RK  L E
Sbjct: 305 SGIENYSRYLSGRAPGEPPPTLMDYLPDDALLIIDESHVTVSQVGAMYKGDRSRKENLVE 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+F+E+  + P T+ VSATPG +ELE+  G +VEQ++RPTGLVDP +
Sbjct: 365 YGFRLPSALDNRPLKFDEFEAIAPQTVYVSATPGKYELERSSGEVVEQVVRPTGLVDPII 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R+  TQV+D+  E+ L  ++  R+L T LTK+MAEDL++YL E  IRVRY+HS++ T+
Sbjct: 425 EVRAVATQVDDLMSEVRLRVEKEERVLATTLTKKMAEDLSDYLDEHGIRVRYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----- 734
           RNVN K ILY D IT S+Q AI+ET RRREKQ+  N++H I PQ + +K+ +V+D     
Sbjct: 545 RNVNGKAILYGDRITGSMQRAIEETDRRREKQIAFNEEHGITPQKLNKKVTDVMDLGQGG 604

Query: 735 --PILLEDAATTNISIDAQQLSLSKKKGKAHLKSL---RKQMHLAADNLNFEEAARIRDE 789
                    A   ++      ++  K   A +K +    K+M+ AA NL FE+AA++RD+
Sbjct: 605 ANRKNRAAKAVAEVASGYDPRTVMIKDTNAVIKEIEAKEKEMYEAAQNLEFEKAAQLRDD 664

Query: 790 IKRLKSSP 797
           IK L+   
Sbjct: 665 IKTLREQL 672


>gi|196045644|ref|ZP_03112874.1| excinuclease ABC, B subunit [Bacillus cereus 03BB108]
 gi|225867129|ref|YP_002752507.1| excinuclease ABC, B subunit [Bacillus cereus 03BB102]
 gi|196023475|gb|EDX62152.1| excinuclease ABC, B subunit [Bacillus cereus 03BB108]
 gi|225786785|gb|ACO27002.1| excinuclease ABC, B subunit [Bacillus cereus 03BB102]
          Length = 658

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/656 (53%), Positives = 477/656 (72%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSEVKTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEVKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                    A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 EPEIYEVTPAKK--MTKKEREKTIAKVEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|42523763|ref|NP_969143.1| excinuclease ABC subunit B [Bdellovibrio bacteriovorus HD100]
 gi|39575970|emb|CAE80136.1| excinuclease ABC subunit B [Bdellovibrio bacteriovorus HD100]
          Length = 745

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/659 (57%), Positives = 493/659 (74%), Gaps = 5/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +++ PSGDQP AI Q+ +  ++  K Q LLGVTGSGKTFTMA  I  + +PA+V+A
Sbjct: 63  FQLVSEFKPSGDQPKAIEQIAENFNAGLKHQTLLGVTGSGKTFTMAHTIANLNQPALVLA 122

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+EFK  FPHNAVEYFVSYYDYYQPEAY+P TDTYIEK+S+INEQIDRMRH
Sbjct: 123 PNKTLAAQLYAEFKELFPHNAVEYFVSYYDYYQPEAYIPSTDTYIEKDSAINEQIDRMRH 182

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL +R D I+VSSVSCIYG+GS E+Y  M++Q+    S+++  LL  L++ QY+R 
Sbjct: 183 SATRSLFDRRDVIIVSSVSCIYGLGSPEAYEGMMIQIVSNTSMKRDHLLRELIRIQYQRN 242

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGT RV GD++EIFP + E+ A RV  FG+ IE +S   PLTGQ +  ++ I IY
Sbjct: 243 NVDFSRGTVRVRGDNVEIFPPYEEERAVRVEFFGDYIERLSWIDPLTGQILEELDQIGIY 302

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT   +L  A+K I++EL+ RL++L +E +LLEAQRLEQR  YD+EM+E  G CQ
Sbjct: 303 PGSHHVTSDDSLKRAIKTIQDELRDRLVQLNQEMKLLEAQRLEQRTYYDIEMMEQMGFCQ 362

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++TGR PGEPPPTL EY P+D + F+DESHVT+PQI GMYRGD  RK  L E+
Sbjct: 363 GIENYSRHMTGRGPGEPPPTLLEYFPKDFVTFIDESHVTVPQIGGMYRGDRARKMNLVEH 422

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+  +    + VSATPG++EL++ +G+IVEQIIRPTGL+DP VE
Sbjct: 423 GFRLPSALDNRPLNFQEFEAMMDKVVYVSATPGTYELQKSEGVIVEQIIRPTGLIDPIVE 482

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + QV+D+  EI +   +  R+L+T LTKR AEDLTEY     I+V+Y+HSE+ T+E
Sbjct: 483 VRPVKHQVDDLLKEIRIRVSKQERVLITTLTKRSAEDLTEYYENLGIKVKYLHSEIDTME 542

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVLVGINLLREGLDIPE  LV I DADKEGFLRS+ SL+QTIGRAAR
Sbjct: 543 RMEILRDLRLGVFDVLVGINLLREGLDIPEVSLVGITDADKEGFLRSERSLVQTIGRAAR 602

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N +VILY DT+T+S++ AI+ET RRR  Q E+N+ H I PQSVK++I + +  +    
Sbjct: 603 NLNGRVILYGDTVTESMEKAINETERRRRIQSEYNEAHGITPQSVKKRIRDGLGEMFDGT 662

Query: 741 AATT-----NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +T        +   Q+ +   +K +  +  LR +M   + NL FEEAA+IRDEIKRL+
Sbjct: 663 VSTPLGGENKSAAIMQKFAQQPEKIQQEITKLRARMKELSANLEFEEAAKIRDEIKRLQ 721


>gi|258517051|ref|YP_003193273.1| excinuclease ABC subunit B [Desulfotomaculum acetoxidans DSM 771]
 gi|257780756|gb|ACV64650.1| excinuclease ABC, B subunit [Desulfotomaculum acetoxidans DSM 771]
          Length = 674

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/653 (55%), Positives = 481/653 (73%), Gaps = 3/653 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++++++ P GDQP AIAQL+ G+  +   Q+LLGVTGSGKT+TMAKVIE +QRPA+++AP
Sbjct: 4   KIRSEFTPRGDQPQAIAQLVDGLGKKYDKQILLGVTGSGKTYTMAKVIEEVQRPALILAP 63

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK LAAQL SEFK FFP+NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID++RHS
Sbjct: 64  NKTLAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYIAHTDTYIEKDSSLNDEIDKLRHS 123

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT +L ER D ++V+SVSCIYG+G  E YS +++ L+ G   ++  +L  LV  QY+R D
Sbjct: 124 ATCALFERRDVVIVASVSCIYGLGDPEEYSTLVLSLRQGVEYDRDAILRKLVDIQYERND 183

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           I   RGTFRV GD IEIFP    + A RV MFG+++E++ +F  LTG+     + I ++ 
Sbjct: 184 INFTRGTFRVRGDVIEIFPVAATEQAIRVEMFGDEVEKLLQFDVLTGEITGQRQHISVFP 243

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            SHY T +  +  A+  I+ EL+ RL EL K+ +LLEAQRLEQR  YD+EM+   G C  
Sbjct: 244 ASHYATSKEKMEEAISRIESELEQRLAELRKQDKLLEAQRLEQRTNYDIEMMREMGFCNG 303

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSR+LTGR  G+PP TL +Y P+D ++F+DESHV +PQI GMY GD  RKA+L E+G
Sbjct: 304 IENYSRHLTGREAGQPPYTLLDYFPDDFIMFIDESHVAVPQIGGMYEGDRSRKASLIEHG 363

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPS +DNRPL+F E+       I VSATPG++EL+     IVEQ+IRPTGLVDP + I
Sbjct: 364 FRLPSALDNRPLQFNEFEERVKQVIYVSATPGAYELKH-HRQIVEQVIRPTGLVDPEIII 422

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R  R Q++D+  EI L  ++  R+L+T LTK+MAEDLT+Y  E  ++VRY+HS++ TLER
Sbjct: 423 RPTRGQIDDLLMEIRLREKRDERVLITTLTKKMAEDLTDYFKENGVKVRYLHSDINTLER 482

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           +EI+RDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT GRAARN
Sbjct: 483 MEILRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTTGRAARN 542

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           V  KVI+YAD IT+S+  AI+ET RRR+KQL+ N+K+NI PQ+V++ + +V++   + ++
Sbjct: 543 VEGKVIMYADRITESMSKAINETERRRKKQLDFNEKYNITPQTVRKAVRDVLEATKVAES 602

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                     +  +SKK     +  + K+M  AA  L FE+AAR+RD I  L+
Sbjct: 603 KVPYAVSG--KAKMSKKDLIKMIAGMEKEMKEAARQLEFEQAARLRDTIIELR 653


>gi|257865936|ref|ZP_05645589.1| excinuclease ABC [Enterococcus casseliflavus EC30]
 gi|257872269|ref|ZP_05651922.1| excinuclease ABC [Enterococcus casseliflavus EC10]
 gi|257799870|gb|EEV28922.1| excinuclease ABC [Enterococcus casseliflavus EC30]
 gi|257806433|gb|EEV35255.1| excinuclease ABC [Enterococcus casseliflavus EC10]
          Length = 665

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/656 (51%), Positives = 467/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AI QL+ G+   +K Q+LLG TG+GKT+T++ +I+ + +P +++A
Sbjct: 12  FDLVSKYQPAGDQPEAIHQLVDGVVGGKKAQILLGATGTGKTYTISNLIKEVNKPTLIIA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 72  HNKTLAGQLYGEFKDFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCI+G+GS   Y++ +V L++G    + +LL  L++ Q++R 
Sbjct: 132 SATSSLLERNDVIVVASVSCIFGLGSPIEYARQVVSLRVGMEKSRDQLLKELIEIQFERN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A R+  FG++I+ I E   LTG+ + + E + I+
Sbjct: 192 DIDFQRGRFRVRGDVVEIFPASRDERALRIEFFGDEIDRIREVDALTGEIMSDTEHVSIF 251

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I+ EL  RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 252 PATHFVTNEDHMEHAIASIQSELDERLKVLRAENKLLEAQRLEQRTNYDIEMMREMGYTS 311

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ +DESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 312 GIENYSRHMDGRKEGEPPYTLLDFFPDDFLIVIDESHVTMPQVRGMYNGDRARKQMLVDY 371

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E +Q    +++QIIRPTGL+DP +E
Sbjct: 372 GFRLPSALDNRPLRLEEFEKHVNQIVYVSATPGPYEYDQT-DTVIQQIIRPTGLLDPVIE 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+M+EDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 431 VRPIMGQIDDLVGEINERVERNERVFVTTLTKKMSEDLTDYFKELGIKVKYLHSDIKTLE 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 491 RTEIIRDLRLGEFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD +T S+Q AIDET RRR  Q  +N++H I P+++ ++I ++I    + +
Sbjct: 551 NSEGKVIMYADKMTDSMQRAIDETARRRSIQEAYNEEHGIVPKTIIKEIRDLIAITKVAE 610

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 +       LS+++    L    K+M  AA  L+FE AA +RD I  LK++
Sbjct: 611 ETGEYTT--TSYEELSREEKATLLLKFEKEMKDAAKALDFETAATLRDTILELKAA 664


>gi|229072613|ref|ZP_04205815.1| UvrABC system protein B [Bacillus cereus F65185]
 gi|228710589|gb|EEL62562.1| UvrABC system protein B [Bacillus cereus F65185]
          Length = 658

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/656 (53%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYFPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD ITKS+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  +++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETETYEATPSKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|304439582|ref|ZP_07399487.1| excision endonuclease subunit UvrB [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371961|gb|EFM25562.1| excision endonuclease subunit UvrB [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 656

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/658 (55%), Positives = 471/658 (71%), Gaps = 5/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI  L+KG++   K Q LLGVTGSGKTFTMA VIE +QRP +V+A
Sbjct: 3   FKIHSKFKPTGDQPEAIDGLVKGLNKGYKHQTLLGVTGSGKTFTMANVIEKVQRPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL SEFK FFP NA+EYFVSYYDYYQPEAYVP TDT+IEK+SSIN++ID++RH
Sbjct: 63  HNKTLAYQLASEFKEFFPENAIEYFVSYYDYYQPEAYVPGTDTFIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D ++V+SVSCIYG+G    Y  + + L+ G   ++ E++S LV  QY R 
Sbjct: 123 SATMALFERRDVVIVASVSCIYGLGDPIDYEHLAISLRPGMIRDRNEIMSKLVDIQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  IRGTFRV GD++E+FP+   D + R+  FG++I+ I+E   LTG     +    I 
Sbjct: 183 DINFIRGTFRVRGDTLEVFPASSSDRSIRIEFFGDEIDRITEIDTLTGNITGYLNHAFIT 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T    ++ A++ IK EL  RL EL  + +LLEAQRLEQR  YDLEML+  G C 
Sbjct: 243 PASHFATSSEKVDRAIETIKIELDERLKELRGQEKLLEAQRLEQRTNYDLEMLQEMGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PG  P TL +Y P+D LL +DESHVTIPQI GMY GD  RK TL +Y
Sbjct: 303 GIENYSRHLSGREPGSRPYTLIDYFPKDFLLIIDESHVTIPQIRGMYNGDRSRKQTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF E+  +    I VSATPG +E E  Q   VEQIIRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLRFNEFESMVNQAIYVSATPGPYEKEH-QENYVEQIIRPTGLLDPKIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN  A++G R L+T LTK+MAEDLT+Y  E  I+V YMHS+V T+E
Sbjct: 422 VRPIKGQIDDLVSEINKRAEKGERTLVTTLTKKMAEDLTKYFKELGIKVTYMHSDVDTIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG +DVL+GINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT GRAAR
Sbjct: 482 RMEIIRDLRLGVYDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTSGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+  VI+YADTITKS+ + I ET RRR+ Q ++N  HNI P+++++ I +VI   +  +
Sbjct: 542 NVDGIVIMYADTITKSMDVTITETERRRKIQNQYNIDHNIVPKTIEKGIRDVIATTIASE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           +  T    D      +  + +A ++ L+ +M+  A+ LNFE AA IRD+I+ L+    
Sbjct: 602 SNETYKVDD----EFTNDEIEAMIEGLKVRMYKEAEGLNFEAAAEIRDKIEELRKKMI 655


>gi|254820352|ref|ZP_05225353.1| excinuclease ABC subunit B [Mycobacterium intracellulare ATCC
           13950]
          Length = 725

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/709 (50%), Positives = 479/709 (67%), Gaps = 32/709 (4%)

Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185
               ++    +    F++ + + P+GDQPAAI +L + I + E+  +LLG TG+GK+ T 
Sbjct: 17  PAEEAVAGLVRAGGRFEVVSPHDPAGDQPAAIDELERRIRAGERDVVLLGATGTGKSATT 76

Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           A +IE +QRP +VMAPNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYI
Sbjct: 77  AWLIERLQRPTLVMAPNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYI 136

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
           EK+SSIN+ ++R+RHSAT SLL R D +VV+SVSCIYG+G+ +SY    V+L++G+ V +
Sbjct: 137 EKDSSINDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVELRVGNEVPR 196

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
             LL  LV  QY R D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +P
Sbjct: 197 DGLLRLLVDVQYTRNDLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHP 255

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           LTG  IR V++++I+  +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R
Sbjct: 256 LTGDVIRQVDSLRIFPATHYVAGPERMAHAISTIEEELAARLAELEGQGKLLEAQRLRMR 315

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
             YD+EM+   G C  IENYSR++  R PG PP TL +Y PED L+ +DESHVT+PQI G
Sbjct: 316 TNYDIEMMRQVGFCSGIENYSRHIDARGPGSPPATLLDYFPEDFLMVIDESHVTVPQIGG 375

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MY GD  RK  L EYGFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  V
Sbjct: 376 MYEGDMSRKRNLVEYGFRLPSACDNRPLTWEEFADRVGQTVYLSATPGPYELSQSGGEFV 435

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           EQ+IRPTGLVDP V ++  + Q++D+  EI        R+L+T LTK+MAEDLT+YL E 
Sbjct: 436 EQVIRPTGLVDPKVVVKPTKGQIDDLIGEIRKRTDADQRVLVTTLTKKMAEDLTDYLLEM 495

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            IRVRY+HSEV TL R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFL
Sbjct: 496 GIRVRYLHSEVDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFL 555

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS  SLIQTIGRAARNV+ +V +YADTIT S++ AIDET RRR KQ+ +N+ + I+PQ +
Sbjct: 556 RSSRSLIQTIGRAARNVSGEVHMYADTITDSMKEAIDETERRRAKQIAYNEANGIDPQPL 615

Query: 726 KEKIMEVIDPILLEDAATTNISIDA-----------------------------QQLSLS 756
           ++KI +++D +  E + T    ++                                 S+ 
Sbjct: 616 RKKIADILDQVYREASDTEASVVEIGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTTSMP 675

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           + +    +K L  QM  AA +L FE AAR RDEI  LK     +G+D +
Sbjct: 676 RAELADLIKDLTAQMMAAARDLQFELAARFRDEIADLKKE--LRGMDAA 722


>gi|325205898|gb|ADZ01351.1| excinuclease ABC, B subunit [Neisseria meningitidis M04-240196]
          Length = 699

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/665 (53%), Positives = 481/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 33  SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 92

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 93  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 152

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ RND I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 153 RLSATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 212

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    
Sbjct: 213 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYT 272

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 273 VFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 332

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 333 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 392

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P TI VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 393 DYGFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 451

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   ++G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 452 IIIRPVATQVDDLMSEINDRIEKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 511

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 512 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 571

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++  I PQ +K+++ ++ID +  
Sbjct: 572 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEQGIVPQQIKKQVKDIIDGVYH 631

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+  +        ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 632 EEDGSKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRDIK 691

Query: 795 SSPYF 799
            +  F
Sbjct: 692 ENLLF 696


>gi|270260806|ref|ZP_06189079.1| UvrABC system protein B [Serratia odorifera 4Rx13]
 gi|270044290|gb|EFA17381.1| UvrABC system protein B [Serratia odorifera 4Rx13]
          Length = 670

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/665 (55%), Positives = 467/665 (70%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +D+ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V
Sbjct: 3   KIFKLHSDFKPAGDQPEAIRKLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+S++NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  E Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPELYLKMMLHLTKGMIIDQRSILRRLTELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    R TFRV G+ I+IFP+  +++A R+ +F  ++E +S F PLTGQ  + V+   
Sbjct: 183 RNDQAFQRATFRVRGEVIDIFPAESDELALRIELFDEEVERLSLFDPLTGQIEQVVQRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYVTPR  +  AM+ IK +L  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKSHYVTPRERILQAMEEIKVDLAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR+ GEPPPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRSEGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGDDIIDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R   TQV+D+  EI        R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 VEVRPVTTQVDDLLSEIRKRVAVKERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N K ILY D IT S+  AI ET RRR KQ   N+++ I P+ + +K+ +++     
Sbjct: 543 ARNLNGKAILYGDRITDSMARAIGETERRRVKQQAFNEENGIVPKGLNKKVSDILQLGQP 602

Query: 739 EDAAT-----TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
            + +            AQ   L+ K     ++ L  QM+  A NL FE AA +RDEI +L
Sbjct: 603 GNRSKGRGKGKAAESAAQYQHLTPKALDQKIRELEAQMYTHAQNLEFELAAGLRDEIHQL 662

Query: 794 KSSPY 798
           +    
Sbjct: 663 REQFI 667


>gi|53803510|ref|YP_114621.1| excinuclease ABC subunit B [Methylococcus capsulatus str. Bath]
 gi|81823612|sp|Q605S7|UVRB_METCA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|53757271|gb|AAU91562.1| excinuclease ABC, B subunit [Methylococcus capsulatus str. Bath]
          Length = 664

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/663 (55%), Positives = 485/663 (73%), Gaps = 7/663 (1%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           +++ Y PSGDQP AI +L++G++  E  Q LLGVTGSGKTFT+A VI  +QRP +++A N
Sbjct: 2   LRSGYAPSGDQPEAIRRLVEGLNDGELHQTLLGVTGSGKTFTIANVIAQVQRPTLILAHN 61

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY E K FFP N+VEYFVSYYDYYQPEAYVP +DTYIEK+SS+NE I++MR SA
Sbjct: 62  KTLAAQLYGEMKEFFPENSVEYFVSYYDYYQPEAYVPASDTYIEKDSSLNEHIEQMRLSA 121

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           T++L+ER+D ++V++VS IYG+G   SY +M++ L  GD ++Q+ L+  L + QY R + 
Sbjct: 122 TKALIERHDTVIVATVSSIYGLGEPASYFEMVLHLVRGDMIDQRTLVRRLAELQYTRNEA 181

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
            + RG++RV GD I+I+P+  E  A RV +F ++IE +S F PLTG+ I  +    +Y  
Sbjct: 182 ELRRGSYRVRGDVIDIYPAESEKEALRVELFDDEIERLSLFDPLTGEVISRIARYTVYPK 241

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           +HYVTPR  L  A++ IK ELK RL  L  + +L+EAQRLEQR  +D+E++   G C  I
Sbjct: 242 THYVTPREKLLEAVEEIKVELKDRLEHLRSQHKLVEAQRLEQRTLFDVEIILEVGYCSGI 301

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSR+L+GR PGEPPPTLF+Y+P+D+L+ +DESHVT+PQI  MYRGD  RK TL EYGF
Sbjct: 302 ENYSRFLSGRAPGEPPPTLFDYLPDDALIVIDESHVTVPQIGAMYRGDRSRKETLVEYGF 361

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPS +DNRPL+FEE+    P  I VSATPG +E     G +VEQ++RPTGLVDP VE+R
Sbjct: 362 RLPSALDNRPLKFEEFEARAPQRIYVSATPGPYERAHS-GAVVEQVVRPTGLVDPEVEVR 420

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A TQV+D+  EI    Q G R+L+T LTKRMAEDLTEYL E ++ VRY+HS+V T+ER+
Sbjct: 421 PASTQVDDLLSEIRFRVQGGERVLVTTLTKRMAEDLTEYLMEHDVAVRYLHSDVDTVERV 480

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAARN+
Sbjct: 481 EIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSAVSLIQTIGRAARNL 540

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           + K ILYAD +T+S+Q AIDET RRR KQ+ +N++H + P+ + + + ++++  +   +A
Sbjct: 541 HGKAILYADKVTQSMQQAIDETERRRAKQIAYNERHGLTPRGITKSVTDILEVSIPGGSA 600

Query: 743 TTNISI------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +           A        +    +K L ++M+  A +L FEEAAR+RDEI+R++ S
Sbjct: 601 GSRKQAARVAEPGAGYKVAKPSEAARLIKQLEEKMYAHARDLEFEEAARLRDEIQRIRES 660

Query: 797 PYF 799
              
Sbjct: 661 ALM 663


>gi|253732793|ref|ZP_04866958.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253729158|gb|EES97887.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 661

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/657 (52%), Positives = 473/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKIHSDFEPQGDQPQAIEEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 126 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E    TG+ ++  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYRTGEVLKEREHFAI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVD 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 366 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHT-DKMVEQIIRPTGLLDPKI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI +  ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 EVRPTENQIDDLLSEIQIRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   + E
Sbjct: 545 RNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATV-E 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +    + +       ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 604 NDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAE 660


>gi|46580016|ref|YP_010824.1| excinuclease ABC subunit B [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81830433|sp|Q72BN0|UVRB_DESVH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|46449432|gb|AAS96083.1| excinuclease ABC, B subunit [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233985|gb|ADP86839.1| excinuclease ABC, B subunit [Desulfovibrio vulgaris RCH1]
          Length = 677

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/672 (52%), Positives = 465/672 (69%), Gaps = 12/672 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F++ T++ P+GDQP AI Q++  +    + Q+LLGVTGSGKTFT+A VI A  RPA++
Sbjct: 4   TCFRLHTEFEPTGDQPEAIGQIVANLGHGVRDQVLLGVTGSGKTFTVANVIAACNRPALI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+EF+  FP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ ID++
Sbjct: 64  LAPNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R D ++V+SVSCIYG+GS E Y+++++ ++ G       L++ LV+ QY+
Sbjct: 124 RHAATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEVQYQ 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD +E+ P++  + A R+  FG+DI+ ISE  PLTG+ + +V    
Sbjct: 184 RNDFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVGKTV 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYV+ R  L  AM  I++EL  RL E +   RL+EAQRLEQR   DLEM+E  G 
Sbjct: 244 IYPASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L GR  G+PP  L +Y P+D LLFVDESH+T+PQ+  MY+GD  RK+TL 
Sbjct: 304 CNGIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKSTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS +DNRPL F E+      T+ VSATPG WEL++ QG+I EQIIRPTGLVDP 
Sbjct: 364 DFGFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLVDPV 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R  R QV+D+  E    A +  R+L+T LTKRMAEDLTE+L    + VRY+HS++ T
Sbjct: 424 VEVRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+ II+ LR G+ DVLVGINLLREGLDIPE  LV+ILDADKEGFLRS  SLIQT GRA
Sbjct: 484 MERMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN   +VILYADT+T S++ A+DET RRRE+Q   N+ + I P+++++ +    D I  
Sbjct: 544 ARNAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDAIYS 603

Query: 739 EDAATTNIS------------IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
             +                   +  +   S +    H++ L ++M  AA  L FE AA +
Sbjct: 604 AASEGGKGKGRGRGRQAAPAVENVAEYGTSPEDMAKHIQKLEREMREAAKELEFERAATL 663

Query: 787 RDEIKRLKSSPY 798
           RD I+ L+    
Sbjct: 664 RDRIRLLRERLI 675


>gi|240016341|ref|ZP_04722881.1| excinuclease ABC subunit B [Neisseria gonorrhoeae FA6140]
 gi|240080461|ref|ZP_04725004.1| excinuclease ABC subunit B [Neisseria gonorrhoeae FA19]
 gi|240113169|ref|ZP_04727659.1| excinuclease ABC subunit B [Neisseria gonorrhoeae MS11]
 gi|240115928|ref|ZP_04729990.1| excinuclease ABC subunit B [Neisseria gonorrhoeae PID18]
 gi|240118225|ref|ZP_04732287.1| excinuclease ABC subunit B [Neisseria gonorrhoeae PID1]
 gi|240123774|ref|ZP_04736730.1| excinuclease ABC subunit B [Neisseria gonorrhoeae PID332]
 gi|240125963|ref|ZP_04738849.1| excinuclease ABC subunit B [Neisseria gonorrhoeae SK-92-679]
 gi|254493961|ref|ZP_05107132.1| UvrABC system protein B [Neisseria gonorrhoeae 1291]
 gi|260440258|ref|ZP_05794074.1| excinuclease ABC subunit B [Neisseria gonorrhoeae DGI2]
 gi|268596600|ref|ZP_06130767.1| UvrABC system protein B [Neisseria gonorrhoeae FA19]
 gi|268599249|ref|ZP_06133416.1| UvrABC system protein B [Neisseria gonorrhoeae MS11]
 gi|268601596|ref|ZP_06135763.1| UvrABC system protein B [Neisseria gonorrhoeae PID18]
 gi|268603935|ref|ZP_06138102.1| UvrABC system protein B [Neisseria gonorrhoeae PID1]
 gi|268682398|ref|ZP_06149260.1| UvrABC system protein B [Neisseria gonorrhoeae PID332]
 gi|268684556|ref|ZP_06151418.1| UvrABC system protein B [Neisseria gonorrhoeae SK-92-679]
 gi|291043553|ref|ZP_06569269.1| UvrABC system protein B [Neisseria gonorrhoeae DGI2]
 gi|2499099|sp|Q50939|UVRB_NEIGO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|555749|gb|AAA75358.1| UvrB [Neisseria gonorrhoeae]
 gi|226513001|gb|EEH62346.1| UvrABC system protein B [Neisseria gonorrhoeae 1291]
 gi|268550388|gb|EEZ45407.1| UvrABC system protein B [Neisseria gonorrhoeae FA19]
 gi|268583380|gb|EEZ48056.1| UvrABC system protein B [Neisseria gonorrhoeae MS11]
 gi|268585727|gb|EEZ50403.1| UvrABC system protein B [Neisseria gonorrhoeae PID18]
 gi|268588066|gb|EEZ52742.1| UvrABC system protein B [Neisseria gonorrhoeae PID1]
 gi|268622682|gb|EEZ55082.1| UvrABC system protein B [Neisseria gonorrhoeae PID332]
 gi|268624840|gb|EEZ57240.1| UvrABC system protein B [Neisseria gonorrhoeae SK-92-679]
 gi|291012016|gb|EFE04005.1| UvrABC system protein B [Neisseria gonorrhoeae DGI2]
 gi|317164480|gb|ADV08021.1| excinuclease ABC subunit B [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 675

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/665 (53%), Positives = 481/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ A+DET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDSGKGRRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRNIK 667

Query: 795 SSPYF 799
            +  F
Sbjct: 668 ENLLF 672


>gi|152979775|ref|YP_001352938.1| excinuclease ABC subunit B [Janthinobacterium sp. Marseille]
 gi|151279852|gb|ABR88262.1| excinuclease ABC subunit B [Janthinobacterium sp. Marseille]
          Length = 696

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/670 (53%), Positives = 478/670 (71%), Gaps = 4/670 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA+L++GI      Q LLGVTGSGKT+T+A VI  M RPAIV
Sbjct: 22  SPFRLHQPFPPAGDQPTAIAKLVEGIEDGLFYQTLLGVTGSGKTYTVANVIARMGRPAIV 81

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I++M
Sbjct: 82  FAPNKTLAAQLYSEFREFFPENAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQM 141

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R S T+SL+ER D +++++VS IYGIG+   Y QMI+ L+  D V Q+++++ L+  QY 
Sbjct: 142 RLSCTKSLMERRDVVIIATVSAIYGIGNPSEYHQMILTLRAKDKVSQRDVIARLIAMQYT 201

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +I   RGTFRV GD+I+IFP+   ++A R+ MF ++IE +  F PLTG+  + +    
Sbjct: 202 RNEIDFGRGTFRVRGDTIDIFPAEHAELAIRLEMFDDEIESLQLFDPLTGRVKQKIPRFT 261

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYVTPR T+  A++ IK+EL+ RL    KE +L+E QRLEQR  +DLEM++  G 
Sbjct: 262 VYPGSHYVTPRATVLRAIETIKDELRERLEFFRKESKLVEEQRLEQRTRFDLEMMQEIGF 321

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
            + IENYSR+L+G   G+PPPTL +Y+P+D+L+F+DESHV + Q++GMY GD  RK  L 
Sbjct: 322 TKGIENYSRHLSGAKAGDPPPTLVDYLPQDALMFMDESHVLMGQLNGMYNGDRARKTNLV 381

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPLRF+E+       + VSATP  +E       +VEQ++RPTGLVDP 
Sbjct: 382 DYGFRLPSALDNRPLRFDEFEGKMRQMVFVSATPADYENTHADQ-VVEQVVRPTGLVDPL 440

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R A TQV+D+  EI    ++  R+L+T LTKRMAE LTE+L +  I+VRY+HS++ T
Sbjct: 441 ISVRPASTQVDDLMSEITDRVKKNERVLVTTLTKRMAEQLTEFLSDNGIKVRYLHSDIDT 500

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 501 VERVEIIRDLRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRA 560

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+    ILY D +T S++ AIDET RRR KQ+  N  +NI P  +K+ I E+ID +  
Sbjct: 561 ARNLTGMAILYGDKVTDSMRRAIDETERRRAKQIAFNTANNITPIGIKKHIRELIDGVYS 620

Query: 739 EDAATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              A   + +    A+  ++S+K+    +K L K M   A NL FE+AA++RD+++ LK 
Sbjct: 621 PQEARLELQVAQEHAKYEAMSEKQVSKEIKRLEKLMLGHAKNLEFEKAAQVRDQLRILKE 680

Query: 796 SPYFQGLDDS 805
             +     D+
Sbjct: 681 QLFGAPGADN 690


>gi|292487696|ref|YP_003530569.1| excinuclease UvrABC subunit B [Erwinia amylovora CFBP1430]
 gi|292898934|ref|YP_003538303.1| excision nuclease ABC subunit B [Erwinia amylovora ATCC 49946]
 gi|291198782|emb|CBJ45891.1| excision nuclease ABC subunit B [Erwinia amylovora ATCC 49946]
 gi|291553116|emb|CBA20161.1| Excinuclease UvrABC subunit B [Erwinia amylovora CFBP1430]
 gi|312171808|emb|CBX80065.1| Excinuclease UvrABC subunit B [Erwinia amylovora ATCC BAA-2158]
          Length = 674

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/666 (56%), Positives = 473/666 (71%), Gaps = 9/666 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +++ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V
Sbjct: 3   KVFKLNSEFKPAGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTRGMVIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D A RV +F  ++E +S F PLTGQ    +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSIFDPLTGQIESVIPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  L  AM+ IKEEL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERLLQAMEEIKEELVERKKVLLDNNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+ R PGE PPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRYLSARGPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+  G +++Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R   TQV+D+  EI        R+L+TVLTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 VEVRPVGTQVDDLLSEIRQRVAINERVLVTVLTKRMAEDLTEYLTEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PI 736
           ARN+N K ILY D IT S+  AI ET RRREKQ  HN++H I PQ + +KI ++++    
Sbjct: 543 ARNLNGKAILYGDKITPSMARAIGETERRREKQQLHNQEHGIVPQGLNKKISDILELGQG 602

Query: 737 LLEDAATTN-------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           L ++ A          +  D   + LS    +  +  L  QM   A NL FEEAA++RD+
Sbjct: 603 LAKNKAKPRNMKGRSIVEDDPAFVDLSPLGLQKRIHQLEAQMQQHAQNLEFEEAAQVRDQ 662

Query: 790 IKRLKS 795
           + +++ 
Sbjct: 663 LHQVRE 668


>gi|218900287|ref|YP_002448698.1| excinuclease ABC, B subunit [Bacillus cereus G9842]
 gi|228910994|ref|ZP_04074802.1| UvrABC system protein B [Bacillus thuringiensis IBL 200]
 gi|218543131|gb|ACK95525.1| excinuclease ABC, B subunit [Bacillus cereus G9842]
 gi|228848649|gb|EEM93495.1| UvrABC system protein B [Bacillus thuringiensis IBL 200]
          Length = 658

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/656 (53%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y P+D L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPKDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|262278210|ref|ZP_06055995.1| excinuclease ABC subunit B [Acinetobacter calcoaceticus RUH2202]
 gi|262258561|gb|EEY77294.1| excinuclease ABC subunit B [Acinetobacter calcoaceticus RUH2202]
          Length = 673

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/668 (56%), Positives = 478/668 (71%), Gaps = 10/668 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + T Y P+GDQP AI +L+ GI    + QLLLGVTGSGKT+TMA VI   QRP IVM
Sbjct: 6   PFDLVTHYQPAGDQPQAIEKLVNGIEHGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVM 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR
Sbjct: 66  AHNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAINDHIDQMR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V + E++  LV+ QY R
Sbjct: 126 LSATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVEGDRVSRDEIIRRLVEMQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++  +RGT+R+ G+ I+IFP+  +  A R+ +F ++++ I  F PLTG+ +R V  I I
Sbjct: 186 NELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVSRITI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  SHYVTP+  L  A+  IK+EL+ +L    +  +LLEAQR+EQR  YDLEM++  G  
Sbjct: 246 YPKSHYVTPKDHLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYT 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+GR  GE PPTLF+YIPED+LL +DESHVT+PQI  MY+GD  RK  L  
Sbjct: 306 NGIENYSRHLSGRPSGEAPPTLFDYIPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVN 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP++FEEW  + PTTI VSATP  +ELE+    IVEQ++RPTGL+DP +
Sbjct: 366 YGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAKYELEKSDQ-IVEQVVRPTGLIDPEI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR   TQV+DV  EIN+      R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T+
Sbjct: 425 EIRPVLTQVDDVLSEINIRKNLNERVLITTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++II +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  K ILYAD IT S+Q AIDET RRR KQ+E N+ H I P+S   ++++ ID   + 
Sbjct: 545 RNVKGKAILYADRITDSMQKAIDETDRRRAKQIEFNELHGITPRSAVRQVIKEIDSGEVL 604

Query: 740 DAATTNISIDAQQLSLSKKKG---------KAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                +  +  Q  +LS  +            H+  L K M  A+ +L FE+AARIRDEI
Sbjct: 605 SDDEIDEKVLEQAQALSADERHILSDPKLFSKHITKLEKDMLKASKDLQFEQAARIRDEI 664

Query: 791 KRLKSSPY 798
            RLK+   
Sbjct: 665 IRLKAQML 672


>gi|228968260|ref|ZP_04129258.1| UvrABC system protein B [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228791433|gb|EEM39037.1| UvrABC system protein B [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 658

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|120602573|ref|YP_966973.1| excinuclease ABC subunit B [Desulfovibrio vulgaris DP4]
 gi|189037964|sp|A1VDN0|UVRB_DESVV RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|120562802|gb|ABM28546.1| Excinuclease ABC subunit B [Desulfovibrio vulgaris DP4]
          Length = 677

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/672 (52%), Positives = 465/672 (69%), Gaps = 12/672 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F++ T++ P+GDQP AI Q++  +    + Q+LLGVTGSGKTFT+A VI A  RPA++
Sbjct: 4   TCFRLHTEFEPTGDQPEAIGQIVANLGQGVRDQVLLGVTGSGKTFTVANVIAACNRPALI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+EF+  FP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ ID++
Sbjct: 64  LAPNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R D ++V+SVSCIYG+GS E Y+++++ ++ G       L++ LV+ QY+
Sbjct: 124 RHAATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEVQYQ 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD +E+ P++  + A R+  FG+DI+ ISE  PLTG+ + +V    
Sbjct: 184 RNDFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVGKTV 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYV+ R  L  AM  I++EL  RL E +   RL+EAQRLEQR   DLEM+E  G 
Sbjct: 244 IYPASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L GR  G+PP  L +Y P+D LLFVDESH+T+PQ+  MY+GD  RK+TL 
Sbjct: 304 CNGIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKSTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS +DNRPL F E+      T+ VSATPG WEL++ QG+I EQIIRPTGLVDP 
Sbjct: 364 DFGFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLVDPV 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R  R QV+D+  E    A +  R+L+T LTKRMAEDLTE+L    + VRY+HS++ T
Sbjct: 424 VEVRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+ II+ LR G+ DVLVGINLLREGLDIPE  LV+ILDADKEGFLRS  SLIQT GRA
Sbjct: 484 MERMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN   +VILYADT+T S++ A+DET RRRE+Q   N+ + I P+++++ +    D I  
Sbjct: 544 ARNAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDAIYS 603

Query: 739 EDAATTNIS------------IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
             +                   +  +   S +    H++ L ++M  AA  L FE AA +
Sbjct: 604 AASEGGKGRGRGRGRQAAPAVENVAEYGTSPEDMAKHIQKLEREMREAAKELEFERAATL 663

Query: 787 RDEIKRLKSSPY 798
           RD I+ L+    
Sbjct: 664 RDRIRLLRERLI 675


>gi|5870855|gb|AAD46146.2|AF102847_1 excinuclease ABC subunit B [Xanthomonas campestris pv. campestris]
          Length = 673

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/669 (55%), Positives = 487/669 (72%), Gaps = 12/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FELVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L IG+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G I E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEITELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E++   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLRE LD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREALDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N +H I P+SV   I ++++    ED
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVARPISDIMEG-ARED 603

Query: 741 AATTNISID-----------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           AA                  A   ++   +    LK+L ++M+  A +L FE AA+IRD+
Sbjct: 604 AAEKKAGKGRSKSRQVAEEPADYRAMGPAEIAGKLKALEQKMYQHAKDLEFEAAAQIRDQ 663

Query: 790 IKRLKSSPY 798
           I++LK++  
Sbjct: 664 IQKLKAASL 672


>gi|228942302|ref|ZP_04104841.1| UvrABC system protein B [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228975231|ref|ZP_04135789.1| UvrABC system protein B [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981869|ref|ZP_04142164.1| UvrABC system protein B [Bacillus thuringiensis Bt407]
 gi|228777981|gb|EEM26253.1| UvrABC system protein B [Bacillus thuringiensis Bt407]
 gi|228784510|gb|EEM32531.1| UvrABC system protein B [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817346|gb|EEM63432.1| UvrABC system protein B [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326942958|gb|AEA18854.1| excinuclease ABC subunit B [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 658

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/656 (54%), Positives = 479/656 (73%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIISAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G   ++ +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +NK+H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNKEHGITPKTIQKGVRDVIRATTTAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|257869223|ref|ZP_05648876.1| excinuclease ABC [Enterococcus gallinarum EG2]
 gi|257803387|gb|EEV32209.1| excinuclease ABC [Enterococcus gallinarum EG2]
          Length = 665

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/657 (52%), Positives = 472/657 (71%), Gaps = 3/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL+ G+   +K Q+LLG TG+GKT+T++ +I+ + +P +++A
Sbjct: 12  FELLSKYQPAGDQPEAIHQLVDGVVGGKKAQILLGATGTGKTYTVSNLIKEVNKPTLIIA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 72  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCI+G+GS   Y++ +V L++G    + +LL  ++  Q++R 
Sbjct: 132 SATSSLLERNDVIVVASVSCIFGLGSPIEYAKQVVSLRVGMEKPRDQLLKEMIDIQFERN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A R+  FG++I+ I E   LTG+ +   E + I+
Sbjct: 192 DIDFQRGRFRVRGDVVEIFPASRDERALRIEFFGDEIDRIREVDALTGEILGETEHVSIF 251

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  I++EL+ RL  L  E +LLEAQRLEQR  YD+EML   G   
Sbjct: 252 PATHFVTNEDHMEHAIASIQKELEDRLAVLRSENKLLEAQRLEQRTNYDIEMLREMGYTS 311

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ +DESHVT+PQI GMY GD  RK  L +Y
Sbjct: 312 GIENYSRHMDGRKEGEPPYTLLDFFPDDFLIVIDESHVTMPQIRGMYNGDRARKQMLVDY 371

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + VSATPG +E EQ    +++QIIRPTGL+DP VE
Sbjct: 372 GFRLPSALDNRPLRLEEFEEHVNQIVYVSATPGPYEHEQT-DTVIQQIIRPTGLLDPVVE 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+Y  E  I+V+Y+HS+VKTLE
Sbjct: 431 VRPIMGQIDDLVGEINERVEKDQRVFVTTLTKKMAEDLTDYFKELGIKVKYLHSDVKTLE 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FDVLVGINLLREG+D+PE  LVAILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 491 RTEIIRDLRLGEFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSERSLVQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + KVI+YAD +T S+Q AIDET+RRR  Q  +NK+H+I P+++ ++I ++I    + +
Sbjct: 551 NSDGKVIMYADKMTDSMQRAIDETSRRRSIQEAYNKEHDIEPKTIIKEIRDLIAITKVAE 610

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            +    +       +++++    L  L K+M  AA  L+FE AA +RD I  LK++ 
Sbjct: 611 ESGDYTT--TSYEDMTREEKATLLLKLEKEMKDAAKALDFETAATLRDTILELKAAE 665


>gi|147679073|ref|YP_001213288.1| excinuclease ABC subunit B [Pelotomaculum thermopropionicum SI]
 gi|146275170|dbj|BAF60919.1| helicase subunit of the DNA excision repair complex [Pelotomaculum
           thermopropionicum SI]
          Length = 692

 Score =  833 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/666 (54%), Positives = 483/666 (72%), Gaps = 2/666 (0%)

Query: 130 SINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI 189
           +    ++ +  FQ++++Y P GDQP AIA L++G+    K Q+LLG TG+GKT+TMA+VI
Sbjct: 8   NPERKARTMRPFQLKSEYVPKGDQPKAIAALVEGLQKGYKGQVLLGATGTGKTYTMAQVI 67

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
           +A+QRPA+V+APNK LAAQL +EFK FFP+NAVEYFVSYYDYYQPEAY+P+TDTYIEK+S
Sbjct: 68  QAVQRPALVLAPNKTLAAQLCAEFKEFFPNNAVEYFVSYYDYYQPEAYIPQTDTYIEKDS 127

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELL 309
           SIN++ID++RHSAT +L ER D I+V+SVSCIYG+G  E Y  +++ L+ G+  ++  +L
Sbjct: 128 SINDEIDKLRHSATCALFERRDVIIVASVSCIYGLGDPEEYRTLVLSLRRGECYDRDAVL 187

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369
             LV  QY+R DI  +RG FRV GD +EIFP+   + A RV  FG+++E + EF  LTG+
Sbjct: 188 RKLVSIQYERNDINFVRGKFRVRGDVLEIFPASATERAIRVEFFGDEVERLREFDVLTGE 247

Query: 370 KIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD 429
            +     + I+  SHY T R  +  A+  I+ EL+ RL EL  +G+LLEAQRLEQR  +D
Sbjct: 248 ILGERAHVSIFPASHYATSRERMERAIASIEAELEERLAELRSKGKLLEAQRLEQRTRFD 307

Query: 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG 489
           +EM+   G C  IENYSR+LTGR PG+PP TL +Y PED ++F+DESHV +PQ+ GMY G
Sbjct: 308 IEMMREMGFCSGIENYSRHLTGREPGQPPYTLIDYFPEDFIMFIDESHVAVPQVGGMYEG 367

Query: 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
           D  RK  L E+GFRLPS  DNRPL F+E+       I VSATPG +EL+     +VEQII
Sbjct: 368 DRSRKEALVEHGFRLPSAFDNRPLTFKEFMERINQVIYVSATPGPYELKNS-ARVVEQII 426

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           RPTGLVDP + +R  R Q++D+  EI L  ++G R+L+T LTK+MAEDLT+Y  E  ++V
Sbjct: 427 RPTGLVDPEISVRPTRGQIDDLLGEIRLRVKRGERVLVTTLTKKMAEDLTDYFREVGVKV 486

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           RY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS+ 
Sbjct: 487 RYLHSDINTIERMEILRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSER 546

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           SLIQTIGRAARN + KVI+YAD IT S+  AI ET RRR  Q+E+N++H I P++V++ +
Sbjct: 547 SLIQTIGRAARNADGKVIMYADKITDSMSGAIRETERRRRIQMEYNRQHGITPETVRKAV 606

Query: 730 MEVIDPILLEDAATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
            EVI+     +      ++       +S+ + K H+ +L K+M  AA  L FE AA++RD
Sbjct: 607 REVIEATRAAEPGAVYRAVPRTGGKKMSRAELKKHIAALEKEMREAARQLAFERAAQLRD 666

Query: 789 EIKRLK 794
            I  L+
Sbjct: 667 MIIELR 672


>gi|240168014|ref|ZP_04746673.1| excinuclease ABC subunit B [Mycobacterium kansasii ATCC 12478]
          Length = 698

 Score =  833 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/697 (51%), Positives = 476/697 (68%), Gaps = 30/697 (4%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP
Sbjct: 2   RSGARFEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRP 61

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +VM PNK LAAQ+ +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ +
Sbjct: 62  TLVMEPNKTLAAQMANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDV 121

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           +R+RHSAT +LL R D +VV+SVSCIYG+G+ +SY    V+L++G  V +  LL  LV  
Sbjct: 122 ERLRHSATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELRVGSEVPRDGLLRLLVDV 181

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V+
Sbjct: 182 QYTRNDLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVD 240

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
           +++I+  +HYV     +  A+  I+ EL  RL ELE +G+LLEAQRL  R  YD+EM+  
Sbjct: 241 SLRIFPATHYVAGPERMAHAISTIEGELAERLAELEAQGKLLEAQRLRMRTNYDVEMMRQ 300

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK 
Sbjct: 301 VGFCSGIENYSRHIDGRGPGSPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKR 360

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L EYGFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLV
Sbjct: 361 NLVEYGFRLPSACDNRPLTWEEFATRIGQTVYLSATPGPYELSQSGGEFVEQVIRPTGLV 420

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP V ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSE
Sbjct: 421 DPKVVVKPTKGQIDDLIGEIRKRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSE 480

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           V TL R+E++R LRLG +DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLIQTI
Sbjct: 481 VDTLRRVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSRSLIQTI 540

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D 
Sbjct: 541 GRAARNVSGEVHMYADKITDSMKEAIDETERRRAKQIAYNQANGIDPQPLRKKIADILDQ 600

Query: 736 ILLEDAATTNISIDA---------------------------QQLSLSKKKGKAHLKSLR 768
           +  E   T  + I                                ++ + +    +K L 
Sbjct: 601 VYREADDTEAVEIGGSGRNASRGRRAQGAPGRAVSAGVFEGRDTSNMPRAELADLIKDLT 660

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           +QM  AA +L FE AAR RDEI  LK     +G+D +
Sbjct: 661 EQMMAAARDLQFELAARFRDEIADLKKE--LRGMDAA 695


>gi|291540621|emb|CBL13732.1| excinuclease ABC, B subunit [Roseburia intestinalis XB6B4]
          Length = 664

 Score =  833 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/658 (52%), Positives = 464/658 (70%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P+GDQP AI +L+KG     + Q LLGVTGSGKTFTMA VI+A+ +P +
Sbjct: 5   MDHFKLHSKYKPTGDQPHAIEELVKGFEEGNQFQTLLGVTGSGKTFTMANVIQALNKPTL 64

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP+TDTYI K+S+INE+ID+
Sbjct: 65  IISHNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIAKDSAINEEIDK 124

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT +L+ER D IVV+SVSCIYG+GS E Y  M+V L+ G   ++ +++ +LV  QY
Sbjct: 125 LRLSATAALVERKDVIVVASVSCIYGLGSPEDYLGMMVSLRPGMEKDRDDVIRALVDIQY 184

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD++EIFP++  D A RV  FG++I+ I+E   LTG+    +E  
Sbjct: 185 TRNDMDFHRGTFRVRGDTLEIFPANYGDTAVRVEFFGDEIDRITEVDVLTGEIKCELEHF 244

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++  SHYV P+  +  A   I++EL  R+   + E +LLEAQR+ +R  +D+EML+ TG
Sbjct: 245 AVFPASHYVVPQEKILKACDAIEQELDERIRYFKGEDKLLEAQRISERTNFDIEMLKETG 304

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L G   G  P TL +Y  +D L+ VDESH+TIPQI GMY GD  RK+TL
Sbjct: 305 FCSGIENYSRHLAGLPAGATPHTLMDYFKDDYLIIVDESHITIPQIRGMYAGDQSRKSTL 364

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL FEE+       + VSATP  +E E  + +  EQIIRPTGL+DP
Sbjct: 365 VDYGFRLPSAKDNRPLNFEEFESKIDQMLFVSATPNVYEDEH-ELLRTEQIIRPTGLLDP 423

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R    Q++D+  E+N   +   ++L+T LTK+MAEDLT+Y+ E  IRV+Y+HS++ 
Sbjct: 424 EVVVRPVEGQIDDLIGEVNKEIKDHHKVLITTLTKKMAEDLTDYMREIGIRVKYLHSDID 483

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRDLRL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 484 TLERAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGR 543

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD IT S+++A++ET RRRE Q  +N++H I P ++++ + E+I   +
Sbjct: 544 AARNSEGHVIMYADKITDSMRVAMEETKRRREIQQAYNEEHGITPTTIQKSVRELI--SV 601

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +  A   ++      S+++ +    +  ++K+M  AA +LNFE AA  RD++  LK 
Sbjct: 602 SKKVAKEEMNFKKDPESMNRDELTKLIADIQKKMQKAAADLNFEAAAEYRDKMVELKG 659


>gi|262376040|ref|ZP_06069271.1| excinuclease ABC, B subunit [Acinetobacter lwoffii SH145]
 gi|262309134|gb|EEY90266.1| excinuclease ABC, B subunit [Acinetobacter lwoffii SH145]
          Length = 673

 Score =  833 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/671 (55%), Positives = 486/671 (72%), Gaps = 10/671 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D   F++ T Y P+GDQP AI +L+KGI      QLLLGVTGSGKT+TMA VI   QRP 
Sbjct: 3   DKKPFELVTSYQPAGDQPQAIEKLVKGIEQGFHDQLLLGVTGSGKTYTMANVIAQTQRPT 62

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IVMA NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID
Sbjct: 63  IVMAHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHID 122

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SATRSLLER D I+V+SVS IYG+G   +Y  M++ +  GD + + +++  LV+ Q
Sbjct: 123 QMRLSATRSLLERRDTIIVASVSAIYGLGDPNAYMSMLLHVVEGDRIGRDDIIRRLVEMQ 182

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R ++  +RGT+R+ G+ I+IFP+  +  A R+ +F ++++ I  F PLTG+ +R V  
Sbjct: 183 YSRNELEFLRGTYRIRGEIIDIFPAESDQDAIRIELFDDEVDSIRWFDPLTGKMVRKVPR 242

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           + IY  SHYVTP+  L+ A++ I++ELK RL+   +  +LLEAQR+EQR  YDLEM++  
Sbjct: 243 VTIYPKSHYVTPKDNLSRAIETIRDELKERLVFFRENDKLLEAQRIEQRTRYDLEMMQQL 302

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G    IENYSR+L+GR+ GE PPTLF+YIP+D+LL +DESHVT+PQI  MY+GD  RK  
Sbjct: 303 GYTNGIENYSRHLSGRSAGEAPPTLFDYIPDDALLIIDESHVTVPQIGAMYKGDRSRKEN 362

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRP++FEEW  + PTT+ VSATP  +ELE+ Q  IVEQ++RPTGL+D
Sbjct: 363 LVNYGFRLPSALDNRPMKFEEWERIVPTTVYVSATPARYELEKSQQ-IVEQVVRPTGLID 421

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EIR   TQV+DV  EINL      R+L+T LTKRMAEDLT YL E  I+V Y+HS++
Sbjct: 422 PEIEIRPVLTQVDDVLSEINLRKDINERVLVTTLTKRMAEDLTSYLKEYGIKVAYLHSDI 481

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER++II +LR G  DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 482 DTVERVKIIHELRTGVHDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 541

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN+  K ILYAD IT S+Q AI+ET RRR KQ++ N++H I P+S   ++++ ID  
Sbjct: 542 RAARNLKGKAILYADRITDSMQKAIEETDRRRAKQIQFNEEHGITPRSAVRQVIKEIDTG 601

Query: 737 LLEDAATTNISIDAQQLSLSKKKG---------KAHLKSLRKQMHLAADNLNFEEAARIR 787
            + D  +  + +  Q  ++S  +            H+  L K+M  A+  L FE+AAR+R
Sbjct: 602 EVLDDDSIELKVSDQARAISADERHIMADPKMFAKHINKLEKEMLKASKELQFEQAARMR 661

Query: 788 DEIKRLKSSPY 798
           DEI RLK+  +
Sbjct: 662 DEIVRLKAQMF 672


>gi|117928313|ref|YP_872864.1| excinuclease ABC subunit B [Acidothermus cellulolyticus 11B]
 gi|117648776|gb|ABK52878.1| Excinuclease ABC subunit B [Acidothermus cellulolyticus 11B]
          Length = 705

 Score =  833 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/696 (51%), Positives = 490/696 (70%), Gaps = 28/696 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + +  + +  F++ ++Y PSGDQP AI +L + I   ++  +LLG TG+GKT T+A +
Sbjct: 2   RPVTDVQRRVAPFRVISEYRPSGDQPQAIDELERRIRRGDRDVVLLGATGTGKTATIAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +V+ PNK LAAQ  +E +   P NA+EYFVSYYDYYQPEAY+P+TDTYIEK+
Sbjct: 62  IERLQRPTLVIEPNKTLAAQFANELRQLMPENAIEYFVSYYDYYQPEAYIPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           +SIN++++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +++L++G+ +E+  L
Sbjct: 122 ASINDEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMLRLRVGEEIERDIL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R D+   RGTFRV GD+I++ P + E++A R+ MFG+ IE ++  +PLTG
Sbjct: 182 LRRLVDIQYTRNDVAFTRGTFRVRGDTIDVIPQY-EELAVRIEMFGDVIERLATLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + +   E I I+  SHY+     +  A++ I+EEL  RL ELEK+ +LLEAQRL  R TY
Sbjct: 241 EVLSEDEEIYIFPASHYIAGPERMARAIRDIEEELAQRLAELEKQNKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML   G+C  IENYSR++ GR PG PP TL +Y PED LL +DESH+T+PQI GMY 
Sbjct: 301 DLEMLRHIGTCSGIENYSRHIDGRPPGSPPNTLLDYFPEDFLLVIDESHITVPQIGGMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L E+GFRLPS +DNRPLRF+E+      T+ +SATPG +EL +  G +VEQ+
Sbjct: 361 GDMSRKRVLVEHGFRLPSALDNRPLRFDEFLDRIGQTVYLSATPGPYELAKVGGDVVEQV 420

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++  + Q++D+  EI + A++G R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 421 IRPTGLVDPEIVVKPTKGQIDDLVHEIRVRAERGERVLVTTLTKKMAEDLTDYLLELGIR 480

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSEV TL R+E++R+LR G+FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS 
Sbjct: 481 VRYLHSEVDTLRRVELLRELRQGEFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSA 540

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAAR+V+ +V +YADT+T +++ AIDET RRR KQL +N +H I+PQ +++K
Sbjct: 541 TSLIQTIGRAARHVSGQVHMYADTVTAAMKEAIDETNRRRAKQLAYNAEHGIDPQPIRKK 600

Query: 729 IMEVIDPILLEDAATTNISID---------------------------AQQLSLSKKKGK 761
           I +++D ++ EDA T  +                                  ++ +++  
Sbjct: 601 IADILDTLIREDADTQALLGGTGRQVSRGKAPAPGLASKAAPPVGRHAKDLAAMPRQELT 660

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             ++ L +QMH AA  L FE AAR+RDEI+ LK   
Sbjct: 661 RLIEELTEQMHAAAAELQFELAARLRDEIRELKKEL 696


>gi|291534604|emb|CBL07716.1| excinuclease ABC, B subunit [Roseburia intestinalis M50/1]
          Length = 660

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/658 (52%), Positives = 464/658 (70%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P+GDQP AI +L+KG     + Q LLGVTGSGKTFTMA VI+A+ +P +
Sbjct: 1   MDHFKLHSKYKPTGDQPHAIEELVKGFEEGNQFQTLLGVTGSGKTFTMANVIQALNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP+TDTYI K+S+INE+ID+
Sbjct: 61  IISHNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIAKDSAINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT +L+ER D IVV+SVSCIYG+GS E Y  M+V L+ G   ++ +++ +LV  QY
Sbjct: 121 LRLSATAALVERKDVIVVASVSCIYGLGSPEDYLGMMVSLRPGMEKDRDDVIRALVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD++EIFP++  D A RV  FG++I+ I+E   LTG+    +E  
Sbjct: 181 TRNDMDFHRGTFRVRGDTLEIFPANYGDTAVRVEFFGDEIDRITEVDVLTGEIKCELEHF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++  SHYV P+  +  A   I++EL  R+   + E +LLEAQR+ +R  +D+EML+ TG
Sbjct: 241 AVFPASHYVVPQEKILKACDAIEQELDERIRYFKGEDKLLEAQRISERTNFDIEMLKETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L G   G  P TL +Y  +D L+ VDESH+TIPQI GMY GD  RK+TL
Sbjct: 301 FCSGIENYSRHLAGLPAGATPHTLMDYFKDDYLIIVDESHITIPQIRGMYAGDQSRKSTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL FEE+       + VSATP  +E E  + +  EQIIRPTGL+DP
Sbjct: 361 VDYGFRLPSAKDNRPLNFEEFESKIDQMLFVSATPNVYEDEH-ELLRTEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R    Q++D+  E+N   +   ++L+T LTK+MAEDLT+Y+ E  IRV+Y+HS++ 
Sbjct: 420 EVVVRPVEGQIDDLIGEVNKEIKDHHKVLITTLTKKMAEDLTDYMREIGIRVKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRDLRL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD IT S+++A++ET RRRE Q  +N++H I P ++++ + E+I   +
Sbjct: 540 AARNSEGHVIMYADKITDSMRVAMEETKRRREIQQAYNEEHGITPTTIQKSVRELI--SV 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +  A   ++      S+++ +    +  ++K+M  AA +LNFE AA  RD++  LK 
Sbjct: 598 SKKVAKEEMNFKKAPESMNRDELTKLIADIQKKMQKAAADLNFEAAAEYRDKMVELKG 655


>gi|329928741|ref|ZP_08282590.1| excinuclease ABC, B subunit [Paenibacillus sp. HGF5]
 gi|328937522|gb|EGG33940.1| excinuclease ABC, B subunit [Paenibacillus sp. HGF5]
          Length = 663

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/660 (54%), Positives = 472/660 (71%), Gaps = 3/660 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
               F++Q+++ P GDQP AI  L++G+   +K Q LLG TG+GKTFT+A+ I  + RP 
Sbjct: 7   STKSFEIQSEFQPQGDQPTAIDALVEGLRQGKKHQTLLGATGTGKTFTIAQTIAKVNRPT 66

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LAAQL SEFK FFP+N+V+YFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID
Sbjct: 67  LVIAHNKTLAAQLASEFKEFFPNNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSSINEEID 126

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++RHSAT SL ER D I+V+SVSCIYG+GS   Y +M++ L++G    + E+LS LV  Q
Sbjct: 127 KLRHSATSSLFERRDVIIVASVSCIYGLGSPHEYGEMLLSLRVGMEKPRNEILSRLVDIQ 186

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R DI  +RGTFRV GD +EIFP+   + A RV +FG++IE I+E   LTG+ +   E 
Sbjct: 187 YQRNDINFVRGTFRVRGDVVEIFPASKGEHAVRVELFGDEIERITEIDVLTGELVGEREH 246

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           I I+  SH+VT   T+  A+  I+ EL+ RL  L  EG+LLEAQRLEQR  YD+EM++  
Sbjct: 247 IAIFPASHFVTREETMRVALVNIERELEERLELLRSEGKLLEAQRLEQRTRYDIEMMKEV 306

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS  LT R PG  P TL +Y P+D L  +DESHVT+PQI  MY GD  RK  
Sbjct: 307 GFCSGIENYSGPLTFREPGATPYTLLDYFPDDMLFVIDESHVTLPQIRAMYNGDRARKTV 366

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L ++GFRLPS +DNRPL+FEE+       I VSATPG +E+E C   +VEQIIRPTGL+D
Sbjct: 367 LVDHGFRLPSALDNRPLKFEEFEEKVNQIIYVSATPGPYEMEHC-DTMVEQIIRPTGLLD 425

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +++R    Q++D+  EI+    +  R+L+T LTK+MAEDLT+YL E  I+VRYMHS++
Sbjct: 426 PIIDVRPTEGQIDDLIGEIHDRVDRDERVLVTTLTKKMAEDLTDYLKEIGIKVRYMHSDI 485

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           KTLER++I+RDLRLG F VLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIG
Sbjct: 486 KTLERMQILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRSDRSLIQTIG 545

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN   KVI+Y D IT S+  AI ET RRR  Q+ +N++H I PQ++++K+ +VI+  
Sbjct: 546 RAARNSEGKVIMYGDKITDSMDRAIKETERRRSIQVAYNEEHGITPQTIRKKVRDVIEAT 605

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            + +     +  + Q+  +SKK+ +  ++ L  +M  AA NL FE AA +RD +  L++ 
Sbjct: 606 KVAEGKADYLVGEGQK--MSKKERQKLIQRLEAEMKEAAKNLQFERAAELRDALLELQAE 663


>gi|297588591|ref|ZP_06947234.1| excision endonuclease subunit UvrB [Finegoldia magna ATCC 53516]
 gi|297573964|gb|EFH92685.1| excision endonuclease subunit UvrB [Finegoldia magna ATCC 53516]
          Length = 656

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/656 (52%), Positives = 469/656 (71%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L  G+ + +  Q+L GVTGSGKTFTMA +I+ +QRP +V+A
Sbjct: 3   FKLHSKFKPTGDQPQAIDKLANGLENGKNHQILKGVTGSGKTFTMANIIQKVQRPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL SEF+ FFP NAVE+FVSYYDYYQPEAYV ++DTYIEK+SSINE++D++RH
Sbjct: 63  HNKTLAYQLASEFREFFPENAVEFFVSYYDYYQPEAYVVQSDTYIEKDSSINEELDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+VSSVSCIYG+G    Y  +++ L+ G   ++ E++  L+  QY R 
Sbjct: 123 SATMSLFERRDVIIVSSVSCIYGLGDPIDYENLVISLRPGMEKDRTEVMKKLIDIQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GDS++IFP+   + + R+  FG++I+ I+E   LTG+ +     + IY
Sbjct: 183 DINFTRGTFRVRGDSLDIFPASSGEKSVRIEFFGDEIDRITEIDALTGEIVGERNHVAIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T +  +  A+  I+EEL+ R    +   +LLEAQRLEQR  YD+EML+  G C 
Sbjct: 243 PASHYATTQKKVEKAIVTIEEELEDRSKYFKDHNKLLEAQRLEQRTRYDIEMLKEMGFCT 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++ R PG  P TL +Y P+D +  +DESHVT+PQI GMY GD  RK +L +Y
Sbjct: 303 GIENYSRHMSQRKPGSRPYTLIDYFPKDFVTMIDESHVTVPQIGGMYEGDRSRKTSLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF E+  +    I VSATPG +E  +    +VEQIIRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLRFNEFESMMNQVIYVSATPGKYEKAKTNE-VVEQIIRPTGLLDPKIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN   ++G R+L+T LTK+M+EDLT YL + +I+V Y+HS++ T+E
Sbjct: 422 VRPTKGQIDDLVSEINKTIEKGERVLITTLTKKMSEDLTRYLEDLDIKVTYLHSDIDTIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR GK+DVLVGINLLREGLD+PE  L+AILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RMEIIRDLREGKYDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+Y DTIT+S+ +AI ET RRRE Q E+N++HNI P ++ + + + I    + +
Sbjct: 542 NSNGHVIMYGDTITRSMDVAITETNRRREIQKEYNEEHNIIPTTINKSVRKRIQNTFVAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              +       +   SK + +  +++L  +M  AA+ L+FE AA +RD+I+ LK++
Sbjct: 602 ENESYDVNKVTEF--SKDEIEVIIENLNTEMLKAAEELDFERAATLRDQIRNLKNT 655


>gi|282916100|ref|ZP_06323863.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           D139]
 gi|283769921|ref|ZP_06342813.1| UvrABC system protein B [Staphylococcus aureus subsp. aureus H19]
 gi|282320048|gb|EFB50395.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           D139]
 gi|283460068|gb|EFC07158.1| UvrABC system protein B [Staphylococcus aureus subsp. aureus H19]
          Length = 663

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 473/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 8   PFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 67

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 68  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 127

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 128 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 187

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I
Sbjct: 188 NDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAI 247

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 248 FPASHFVTREEKLKVAIELIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 307

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 308 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVD 367

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 368 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHT-DKMVEQIIRPTGLLDPKI 426

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 427 EVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 486

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 487 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 546

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   + E
Sbjct: 547 RNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATV-E 605

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +    + +       ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 606 NDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAE 662


>gi|260589087|ref|ZP_05855000.1| excinuclease ABC subunit B [Blautia hansenii DSM 20583]
 gi|260540507|gb|EEX21076.1| excinuclease ABC subunit B [Blautia hansenii DSM 20583]
          Length = 667

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/660 (54%), Positives = 470/660 (71%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F+++  Y P+GDQP AIA+L+KG     + Q LLGVTGSGKTFTMA VI+ +Q+P +
Sbjct: 6   MNEFKLKAPYKPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLQKPTL 65

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAYVP +DTYI K+SS+N++ID+
Sbjct: 66  VIAHNKTLAAQLYGEFKEMFPDNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSVNDEIDK 125

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SL ER D I+VSSVSCIYGIGS + Y  MI+ L+ G   ++ E++  L+  QY
Sbjct: 126 LRLSATSSLSERKDVIIVSSVSCIYGIGSPDDYQNMIISLRPGMEKDRDEVIRELIDIQY 185

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RGTFRV GD +EIFP+   + A RV  FG++I+ I+E   LTG+    +  I
Sbjct: 186 DRNEMDFHRGTFRVRGDVLEIFPADYSETAVRVEFFGDEIDRITEVDILTGEIKSALNHI 245

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV P   +  A   I+EELK R+   + E +LLEAQR+ +R  +D+EML+ TG
Sbjct: 246 AIFPASHYVVPIEKIRKAAVAIEEELKERVDYFKGEDKLLEAQRISERTNFDIEMLKETG 305

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L+G  PG+PP TL +Y  +D L+ +DESH TIPQI GMY GD  RK TL
Sbjct: 306 FCSGVENYSRHLSGLKPGQPPYTLIDYFGDDFLIIIDESHKTIPQIRGMYAGDQSRKQTL 365

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL FEE+       + VSATPG +E E  + +  EQIIRPTGL+DP
Sbjct: 366 VDYGFRLPSAKDNRPLNFEEFEDKIDQILFVSATPGEYE-ENHELLRAEQIIRPTGLLDP 424

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++D+  E+N   ++  +IL+T LTKRMAEDLTEY+ E  IRVRY+HS++ 
Sbjct: 425 EVEVRPVEGQIDDLISEVNKEIKKKNKILITTLTKRMAEDLTEYMKELGIRVRYLHSDID 484

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER +IIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 485 TLERTQIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSEVSLIQTIGR 544

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN + +VI+YAD IT S+++AIDET RRR  Q ++N++H I P+++K+ + ++I    
Sbjct: 545 AARNADGRVIMYADVITDSMRIAIDETMRRRALQQKYNEEHGITPKTIKKAVRDLISISK 604

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                   +  D +  S+S+K+ +  +K ++KQM  AA +LNFE AA +RD++  LK S 
Sbjct: 605 AVAETEEKLEKDPE--SMSRKELENLIKKVQKQMQAAAADLNFEMAASLRDKMLELKKSL 662


>gi|320538870|ref|ZP_08038546.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Serratia symbiotica str. Tucson]
 gi|320031030|gb|EFW13033.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Serratia symbiotica str. Tucson]
          Length = 671

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/668 (55%), Positives = 464/668 (69%), Gaps = 6/668 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++  D+ P+GDQP AI +L  G+      Q LLGVTGSGKTFT+A VI  + RP +V
Sbjct: 3   KIFKLHADFKPAGDQPEAIRKLEAGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKGFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLNQGMIIDQRAILRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    R TFRV G+ I+IFP+   D+A RV +F +++E +S F PLTGQ  + V    
Sbjct: 183 RNDQAFQRATFRVRGEVIDIFPAESGDLALRVELFDDEVERLSLFDPLTGQIEQVVPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYVTPR  +  AMK IK EL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKSHYVTPRTRILQAMKEIKAELAERRQVLLANNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR+ G PPPTLF+Y+P D LL VDESHVTIPQI GM++GD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRSAGAPPPTLFDYLPTDGLLVVDESHVTIPQIGGMFKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPLRFEE+  L P T+ VSATPG +ELE+  G +++Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLRFEEFEALAPQTLYVSATPGKYELEKSGGDLIDQVVRPTGLLDPE 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R   TQV+D+  EI        R+L+T LTKRMAEDLT+YL E   RVRY+HS++ T
Sbjct: 423 VEVRPVTTQVDDLLSEIRKRVALNERVLVTTLTKRMAEDLTDYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN+N K ILY D IT S+  AI ET RRR KQ  +N ++ I PQ + +KI +++     
Sbjct: 543 ARNLNGKAILYGDRITDSMAKAIGETERRRIKQQAYNAENGIVPQGLNKKISDILQLGQH 602

Query: 735 --PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                     +      AQ  SL+    +  ++ L  QM+  A NL FE+A  +RDEI  
Sbjct: 603 PGKRHKGKDKSQASENAAQYQSLTPAALEHKIRELEAQMYSHAQNLEFEQAGALRDEIHH 662

Query: 793 LKSSPYFQ 800
           L+     +
Sbjct: 663 LREQFIAR 670


>gi|120611112|ref|YP_970790.1| excinuclease ABC subunit B [Acidovorax citrulli AAC00-1]
 gi|120589576|gb|ABM33016.1| Excinuclease ABC subunit B [Acidovorax citrulli AAC00-1]
          Length = 696

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/672 (54%), Positives = 488/672 (72%), Gaps = 7/672 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   Y P+GDQP AI QL++G+   E  Q LLGVTGSGKTFTMA VI  + RPAIV
Sbjct: 23  SPFELYQPYPPAGDQPTAIDQLVEGVRDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIV 82

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++M
Sbjct: 83  FAPNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQM 142

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+S+LER D ++V++VS IYGIG+ E Y++M   +++GD + Q++++S L++ QY 
Sbjct: 143 RLSATKSVLERRDVVIVATVSAIYGIGAPEDYTKMRFIMRVGDEISQRDVISRLIRMQYT 202

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +    RGTFRV GD+I++FPS   ++A R+ +F ++IE +S F PLTG+  + +    
Sbjct: 203 RNEQDFARGTFRVRGDTIDVFPSEHSELAIRIELFDDEIETLSLFDPLTGRVRQKIPRFT 262

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY +SHYVTPR  +  A++ IK EL  RL +   EG+L+EAQRLEQR  +DLEML   G 
Sbjct: 263 IYPSSHYVTPRDKVLAAVETIKLELNERLAQFVAEGKLVEAQRLEQRTRFDLEMLSEVGH 322

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENY+R+L+G  PG+PPPTL +Y+P D+L+F+DESH  I Q++ M+ GD  RK TL 
Sbjct: 323 CKGIENYTRHLSGAAPGDPPPTLTDYLPPDALMFLDESHQMIGQLAAMFNGDRARKTTLV 382

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+       + VSATP  +E     G +V+Q++RPTGLVDP 
Sbjct: 383 EYGFRLPSALDNRPLKFEEFERRMRQVVFVSATPADYEKTHS-GQVVDQVVRPTGLVDPV 441

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R A  QV+DV  EI +  ++  R+L+T LTKRMAE LT+YL +  ++VRY+HS++ T
Sbjct: 442 VEVRPATHQVDDVLQEIRVRVERNERVLITTLTKRMAEQLTDYLTDNGVKVRYLHSDIDT 501

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 502 VERVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA 561

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N + ILYAD IT+S++ AI ET RRR KQ+ HN+   I P+S+ +++ ++ID +  
Sbjct: 562 ARNLNGQAILYADRITESMKKAIGETERRRAKQIAHNEAQGITPRSIVKQVRDLIDGVYS 621

Query: 739 EDAATTNISID------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           E        ++      AQ   +S+K     +K L KQM   A NL FE+AAR+RD++ R
Sbjct: 622 EKTGREAERLEQEALRRAQVEDMSEKDVAREIKRLEKQMLDHARNLEFEQAARVRDQLNR 681

Query: 793 LKSSPYFQGLDD 804
           LK+  +     D
Sbjct: 682 LKAQAFGASGAD 693


>gi|328957263|ref|YP_004374649.1| UvrABC system protein B [Carnobacterium sp. 17-4]
 gi|328673587|gb|AEB29633.1| UvrABC system protein B [Carnobacterium sp. 17-4]
          Length = 664

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/660 (52%), Positives = 466/660 (70%), Gaps = 1/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI +L+KGI + EK Q LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 6   FELVSKYQPSGDQPDAIKKLIKGIEAGEKEQTLLGATGTGKTFTVSNVIKEVNKPTLVIA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEKESS+N++ID++RH
Sbjct: 66  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKESSVNDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D IVV+SVSCIYG+ + E Y   ++ L++G  + + E+L  LV  Q++R 
Sbjct: 126 SATSALLERRDVIVVASVSCIYGLVNPEDYRDHVLSLRVGTEMNRDEMLRRLVDMQFERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIF +  +  A RV  FG++I+ I E   LTG+   +V+ + I+
Sbjct: 186 DIDFQRGRFRVRGDVVEIFLASRDSEAIRVEFFGDEIDRIREVDVLTGEIKADVQHVPIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+V       +A+K I+EEL+ RL  L  E +L+EAQRLEQR  YDLEML   G C 
Sbjct: 246 PATHFVANDEQTRSAIKNIQEELEERLKVLRAEDKLIEAQRLEQRTNYDLEMLLEMGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P TL ++ P+D L+ +DESH+T+ QI GMY GD  RK+ L EY
Sbjct: 306 GIENYSRHMDGRKPGEAPYTLIDFFPDDFLIVIDESHITMSQIRGMYNGDRARKSQLIEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + +SATPG +ELE+   +I EQIIRPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLRLEEFENHVNQIMYISATPGPYELERAPEVI-EQIIRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN   ++  R+ +T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 425 VRPIKGQIDDLIGEINERTEKNERVFITTLTKKMSEDLTDYLKEVGIKVAYLHSEIKTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLG +DVL+GINLLREG+D+PE  LV ILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 485 RTEIIRNLRLGVYDVLIGINLLREGIDVPEVSLVIILDADKEGFLRSERSLVQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD IT S++ AI ET RRRE Q E+N+KH I P+++ + I ++I    +  
Sbjct: 545 NENGKVIMYADRITDSMRAAISETERRRETQEEYNEKHGITPKTIIKDIRDLISITSVVK 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
                 S       +++++    +  +  +M +AA  LNFE+AA IRD I  + +    +
Sbjct: 605 GEDEGASGLENIAKMTREQRLELIDGMEVEMKVAAKELNFEKAANIRDMILEITAQYKLK 664


>gi|166712575|ref|ZP_02243782.1| excinuclease ABC subunit B [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 673

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/669 (55%), Positives = 488/669 (72%), Gaps = 12/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L +G+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSVGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G + E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI+   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEIHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDE+ RRREKQ+E+N +H I P+SV+  I ++++    ED
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDESDRRREKQVEYNLEHGITPESVERPISDIMEG-ARED 603

Query: 741 AATTNISID-----------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           AA                      ++   +    LKSL ++M+  A +L FE AA+IRD+
Sbjct: 604 AAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGKLKSLEQKMYQHAKDLEFEAAAQIRDQ 663

Query: 790 IKRLKSSPY 798
           I++LK++  
Sbjct: 664 IQKLKTASL 672


>gi|75759008|ref|ZP_00739116.1| Excinuclease ABC subunit B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493474|gb|EAO56582.1| Excinuclease ABC subunit B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 658

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 478/656 (72%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G    + +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEKYRELVVSLRVGMEKGRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|151220938|ref|YP_001331760.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|150373738|dbj|BAF66998.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           str. Newman]
          Length = 661

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/657 (52%), Positives = 472/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TD ++EK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDAFMEKDASINDEIDQVR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 126 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVD 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 366 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHT-DKMVEQIIRPTGLLDPKI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 EVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +KI ++I   + E
Sbjct: 545 RNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATV-E 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +    + +       ++KK+ +  + ++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 604 NDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAE 660


>gi|326317579|ref|YP_004235251.1| excinuclease ABC subunit B [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374415|gb|ADX46684.1| excinuclease ABC, B subunit [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 696

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/672 (54%), Positives = 487/672 (72%), Gaps = 7/672 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   Y P+GDQP AI QL++G+   E  Q LLGVTGSGKTFTMA VI  + RPAIV
Sbjct: 23  SPFELYQPYPPAGDQPVAIDQLVEGVQDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIV 82

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++M
Sbjct: 83  FAPNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQM 142

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+S+LER D ++V++VS IYGIG+ E Y++M   +++GD + Q++++S L++ QY 
Sbjct: 143 RLSATKSVLERRDVVIVATVSAIYGIGAPEDYTKMRFIMRVGDEISQRDVISRLIRMQYT 202

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +    RGTFRV GD+I++FPS   ++A R+ +F ++IE +S F PLTG+  + +    
Sbjct: 203 RNEQDFARGTFRVRGDTIDVFPSEHSELAIRIELFDDEIETLSLFDPLTGRVRQKIPRFT 262

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY +SHYVTPR  +  A++ IK EL  RL +   EG+L+EAQRLEQR  +DLEML   G 
Sbjct: 263 IYPSSHYVTPRDKVLAAVETIKLELNERLAQFVAEGKLVEAQRLEQRTRFDLEMLSEVGH 322

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENY+R+L+G  PG+PPPTL +Y+P D+L+F+DESH  I Q++ M+ GD  RK TL 
Sbjct: 323 CKGIENYTRHLSGAAPGDPPPTLTDYLPPDALMFLDESHQMIGQLAAMFNGDRARKTTLV 382

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+       + VSATP  +E     G +V+Q++RPTGLVDP 
Sbjct: 383 EYGFRLPSALDNRPLKFEEFERRMRQVVFVSATPADYEKTHS-GKVVDQVVRPTGLVDPV 441

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R A  QV+DV  EI +  ++  R+L+T LTKRMAE LT+YL +  ++VRY+HS++ T
Sbjct: 442 VEVRPATHQVDDVLQEIRVRVERSERVLITTLTKRMAEQLTDYLTDNGVKVRYLHSDIDT 501

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 502 VERVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA 561

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N + ILYAD IT S++ AI ET RRR KQ+ HN+   I P+S+ +++ ++ID +  
Sbjct: 562 ARNLNGQAILYADRITDSMKKAIGETERRRAKQIAHNEAQGITPRSIVKQVRDLIDGVYS 621

Query: 739 EDAATTNISID------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           E        ++      AQ   +S+K     +K L KQM   A NL FE+AAR+RD++ R
Sbjct: 622 EKTGREAERLEQEALRRAQVEDMSEKDVAREIKRLEKQMLDHARNLEFEQAARVRDQLNR 681

Query: 793 LKSSPYFQGLDD 804
           LK+  +     D
Sbjct: 682 LKAQAFGASGAD 693


>gi|269127058|ref|YP_003300428.1| excinuclease ABC subunit B [Thermomonospora curvata DSM 43183]
 gi|268312016|gb|ACY98390.1| excinuclease ABC, B subunit [Thermomonospora curvata DSM 43183]
          Length = 704

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/695 (51%), Positives = 486/695 (69%), Gaps = 27/695 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + +  +    F++ TD  PSGDQP AIA+L   I   ++  +LLG TG+GKT T+A +
Sbjct: 2   RPVTDLQRKDAPFKVVTDMTPSGDQPQAIAELEARIRRGDRDVVLLGATGTGKTATVAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VM PNK LAAQ  +E +   PHNAVEYFVSYYDYYQPEAYVP+TDTYIEK+
Sbjct: 62  IERLQRPTLVMQPNKTLAAQFANELRQMLPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V L++G  +++  L
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDTVVVASVSCIYGLGTPQEYVDRMVTLRVGMEIDRDAL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV   Y R D+   RGTFRV GD++EI P + E++A R+ MFG++IE ++  +PL G
Sbjct: 182 LRKLVDMHYTRNDVAFTRGTFRVRGDTVEIIPQY-EELAVRIEMFGDEIERLATLHPLNG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + + + + + I+  SHYV     +  A+  I+ EL  RL ELE +G+LLEAQRL  R T+
Sbjct: 241 EVLGDSDEVHIFPASHYVAGPERMERAIAGIEAELAERLAELEAQGKLLEAQRLRMRTTH 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G+C  IENYSR++ GR PG PP TL +Y PED LL +DESH T+PQI  MY 
Sbjct: 301 DIEMMRQVGTCSGIENYSRHIDGREPGSPPHTLLDYFPEDFLLVIDESHQTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L E+GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G +VEQ+
Sbjct: 361 GDASRKRMLVEHGFRLPSALDNRPLKWEEFCERIGQTVYLSATPGPYELSRVGGDVVEQV 420

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++  + Q++D+  EI L A++  R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 421 IRPTGLVDPEIVVKPTKGQIDDLVHEIRLRAERDERVLVTTLTKKMAEDLTDYLLELGIR 480

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSEV TL RIE++R+LR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+
Sbjct: 481 VRYLHSEVDTLRRIELLRELRSGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 540

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAAR+V+ +V +YAD IT S+  AI+ET RRR KQ  +N +H I P++++++
Sbjct: 541 TSLIQTIGRAARHVSGQVHMYADQITPSMARAIEETNRRRAKQQAYNAEHGIEPKALRKR 600

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS--------------------------LSKKKGKA 762
           I +++D ++ EDA T  +  D ++LS                            +++ ++
Sbjct: 601 IADILDSLVREDADTQTLLGDGRRLSRGKAPVPGLAPRTRQAGRHAADLVGERPREELES 660

Query: 763 HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            ++ + +QMH AA +L FE AAR+RDEIK LK   
Sbjct: 661 LIEQMTEQMHQAAADLQFELAARLRDEIKELKREL 695


>gi|228903640|ref|ZP_04067760.1| UvrABC system protein B [Bacillus thuringiensis IBL 4222]
 gi|228855908|gb|EEN00448.1| UvrABC system protein B [Bacillus thuringiensis IBL 4222]
          Length = 658

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/656 (54%), Positives = 478/656 (72%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L++GI+S +K Q+LLG TG+GKTFT++ VI+ +Q+P +VMA
Sbjct: 5   FEIVSAYSPQGDQPVAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K+FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++ IN++ID++RH
Sbjct: 65  HNKTLAGQLYSELKDFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDAQINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS E Y +++V L++G    + +LL  LV  QY R 
Sbjct: 125 SATSALFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKGRNQLLRELVDVQYGRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+ L++   R+  FG++I+ I E   LTG+ +   + + I+
Sbjct: 185 DIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A++ I++EL+ RL EL   G+LLEAQR+EQR  YDLEM+   G C 
Sbjct: 245 PASHFVTREEKMKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R  G  P TL +Y PED L+ +DESHV++PQ+  MY GD  RK  L ++
Sbjct: 305 GIENYSRHLTLRPAGATPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQVLVDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       I VSATPG +ELEQ   +I EQIIRPTGL+DPP++
Sbjct: 365 GFRLPSALDNRPLMFDEFEEKTNQVIYVSATPGPYELEQSPEVI-EQIIRPTGLLDPPID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+  EI     +  R+L+T LTK+M+EDLT+YL +  I+V Y+HSE+KTLE
Sbjct: 424 IRPIEGQIDDLLGEIQDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIKTLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S+ +AI+ET RRR  Q  +N++H I P+++++ + +VI      +
Sbjct: 544 NENGRVIMYADRITRSMGIAIEETQRRRTIQEAYNEEHGITPKTIQKGVRDVIRATTAAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T  +  A++  ++KK+ +  +  +  +M  AA  L+FE AA +RD +  LK+ 
Sbjct: 604 ETETYEATPAKK--MTKKEREKTIAKMEAEMKEAAKALDFERAAELRDLLLELKAE 657


>gi|218885558|ref|YP_002434879.1| excinuclease ABC subunit B [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|226695482|sp|B8DJT9|UVRB_DESVM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|218756512|gb|ACL07411.1| excinuclease ABC, B subunit [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 680

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/675 (52%), Positives = 465/675 (68%), Gaps = 11/675 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F ++TDY P GDQP AI Q++  I +    Q+LLGVTGSGKTFTMA+VI    RPA+V
Sbjct: 4   SPFILRTDYEPRGDQPEAIGQIVSNIEAGVTDQVLLGVTGSGKTFTMAQVIARCGRPALV 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+EF+  FP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ ID++
Sbjct: 64  LAPNKTLAAQLYNEFRQLFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDNIDKL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R D ++V+SVSCIYG+GS E Y+++++ ++ G  +    L++ LV+ QY+
Sbjct: 124 RHAATHALLTRRDVVIVASVSCIYGLGSPEYYAKLVIPVETGQRLSMDALITRLVEVQYE 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD +EI P++  + A R+  FG+DI+ ISE  PLTGQ + +V    
Sbjct: 184 RNDYDFHRGTFRVRGDVLEIIPAYHHERALRIEFFGDDIDAISEIDPLTGQVLASVGKTV 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYV+ R  L  A+  I++EL  RL EL+   RL+EAQRLEQR   DLEM+E  G 
Sbjct: 244 IYPASHYVSDRDNLVRAISDIRDELGERLRELKGGNRLVEAQRLEQRTMLDLEMMEEMGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  +ENYSR+L GR  G+PP  L +Y P+D LLFVDESH+T+ Q+  MY+GD  RK+TL 
Sbjct: 304 CNGVENYSRHLDGRKAGDPPSCLLDYFPDDFLLFVDESHITVSQVGAMYKGDRSRKSTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL F E+       I VSATPG WEL++ QGI+ EQIIRPTGLVDP 
Sbjct: 364 DYGFRLPSALDNRPLEFHEFLARLNQAIYVSATPGKWELDRSQGIVAEQIIRPTGLVDPI 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
            E+R  + QV+D+  E  L A +  R+L+T LTKRMAEDLTEY  E  +  RY+HS++ T
Sbjct: 424 TEVRPTKGQVDDLLGECRLRAARDERVLVTTLTKRMAEDLTEYFNEMGVAARYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+ II+ LR  +FDVLVGINLLREGLDIPE  LV+ILDADKEGFLRS  SLIQT GRA
Sbjct: 484 MERMAIIQALRRKEFDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSAGSLIQTFGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV  +V++YAD +T+S+Q A+DET RRRE+Q  +N+ H+I P ++++ +    D I  
Sbjct: 544 ARNVEGRVLMYADVVTRSMQAAMDETARRRERQTGYNEAHHIVPATIRKAVETPFDAIYA 603

Query: 739 EDAATTNISIDAQQL-----------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           E A         ++            S    +    ++ L + M  AA  L FE AA +R
Sbjct: 604 EAAEAKGRKGKGRKGAAQAAETFAPWSSDPHELAKQIQQLERDMREAAKELEFERAAELR 663

Query: 788 DEIKRLKSSPYFQGL 802
           D I+ L+      G 
Sbjct: 664 DRIRLLREHLLGAGG 678


>gi|225175306|ref|ZP_03729301.1| excinuclease ABC, B subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225169058|gb|EEG77857.1| excinuclease ABC, B subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 663

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/659 (55%), Positives = 477/659 (72%), Gaps = 1/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T FQ+++++ P GDQP AI +L +G+    + Q LLGVTGSGKTFTMA +IE +QRP +
Sbjct: 1   MTRFQIKSEFGPQGDQPKAIEELTEGLKKGFRHQTLLGVTGSGKTFTMANIIEKVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF++FFP NAVEYFVSYYDYYQPEAY+P++DTYIEK+S+IN++I++
Sbjct: 61  VIAHNKTLAAQLCSEFRDFFPDNAVEYFVSYYDYYQPEAYIPQSDTYIEKDSAINDEIEK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+GS + Y + +V L++G    + E++  LV  Q+
Sbjct: 121 LRHSATSALFERRDVIIVASVSCIYGLGSPDEYREHVVSLRVGMEKSRDEIVKQLVSIQF 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+ + R  FRV GD +EIFP+   + A RV  FG++IE I E   LTG+ +   + I
Sbjct: 181 ERNDVQLERSRFRVRGDVLEIFPASSTEKAVRVEFFGDEIERIREIDTLTGEILGERQHI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+VT R TL  AM  I+ EL++RL EL    +LLEAQRLEQR  YDLEM+   G
Sbjct: 241 AIFPASHFVTSRDTLEAAMVDIRSELEVRLQELRSRDKLLEAQRLEQRTNYDLEMMNEIG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR++  R  G  P TL +Y PED LLF+DESH TIPQ+ GMY GD  RK TL
Sbjct: 301 FCTGIENYSRHMDRRPAGSRPHTLIDYFPEDFLLFIDESHQTIPQVRGMYAGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL F E+  L    + VSATPG +E E  Q  +VEQIIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLIFHEFEELVNQAVYVSATPGPYEQEHSQQ-VVEQIIRPTGLIDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R  + Q++D+Y EI L A+   R+L+T LTKRMAEDLTEY  E  +RVRY+HSE+ 
Sbjct: 420 EIIMRPVKGQIDDLYGEIRLRAEANERVLVTTLTKRMAEDLTEYYKELGVRVRYLHSEIN 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 TLERMEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+  VI+YAD +T S+Q A+DET RRR+ Q+E N++HNI P ++K+ +  VI+   
Sbjct: 540 AARNVHGTVIMYADKVTDSMQKAMDETERRRQIQMEFNREHNITPATIKKAVRAVIEATQ 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + + A ++         LS  + K  +  L K+M  AA  L+FE+AA +RD I  L+ +
Sbjct: 600 VAEEALSDYVDKDSPAELSPAERKKTIAKLEKEMKKAAKELDFEQAAHLRDMIAALRKT 658


>gi|51246617|ref|YP_066501.1| excinuclease ABC subunit B [Desulfotalea psychrophila LSv54]
 gi|50877654|emb|CAG37494.1| probable excinuclease ABC, subunit B [Desulfotalea psychrophila
           LSv54]
          Length = 706

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/664 (53%), Positives = 473/664 (71%), Gaps = 9/664 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T FQ+ + Y PSGDQP AI +L+ G+   +  Q+LLGVTGSGKTFT+A V+  +QRPA+V
Sbjct: 37  TPFQLVSPYTPSGDQPKAIEELVAGVRRGDCDQVLLGVTGSGKTFTLANVVAELQRPALV 96

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LA QL++EFK  FPHNAVEYFVSYYDYYQPEAY+P +D+YIEK+SSIN+ ID+M
Sbjct: 97  IAPNKTLAGQLFAEFKELFPHNAVEYFVSYYDYYQPEAYIPASDSYIEKDSSINDAIDKM 156

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSATRSLL R D ++V+SVSCIYG+GS + Y  M + L+       +++   LV  QY+
Sbjct: 157 RHSATRSLLTRRDVLIVASVSCIYGLGSPDEYKNMHLLLERDKDYAMEKIQRRLVFMQYE 216

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD ++IFP H E+ A R+  FG+ +E+IS   PL G+ +  +    
Sbjct: 217 RNDTSFHRGTFRVRGDVVDIFPVHEEERAIRLEFFGDTLEKISLIDPLRGKTLEELAEYT 276

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SH+VT +  L  A + IK+ELK RL   ++E RL+EAQR+EQR  +DLEM+   G 
Sbjct: 277 IFPGSHFVTSKDRLQVATEEIKKELKERLDYFQREHRLVEAQRIEQRTMFDLEMMTELGY 336

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+LTG+  G PPP L +Y P+D LL +DESH+ I Q++GMY GD  RK TL 
Sbjct: 337 CTGIENYSRHLTGKEAGAPPPNLLDYFPDDFLLLIDESHIGIGQLNGMYNGDRSRKETLV 396

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPLRF+E+       I VSATPG +ELEQ  G++VEQ+IRPTGL+DP 
Sbjct: 397 KYGFRLPSALDNRPLRFQEFTERIHQAIYVSATPGPYELEQSHGVVVEQVIRPTGLLDPK 456

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R A +QV+D+ +EI L  ++   +L+T LTKRMAEDLTEY  +  I+VRY+HS+VKT
Sbjct: 457 IEVRPASSQVDDLLEEIRLRTERDEAVLVTTLTKRMAEDLTEYYEQLGIKVRYLHSDVKT 516

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L+R+E+I+ LR G+++VLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SL+QT GRA
Sbjct: 517 LQRMELIQSLRKGEYNVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLVQTCGRA 576

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN  VI+YAD IT S+   I ET RRR+ Q  +N++H I PQ++   + + +   L 
Sbjct: 577 ARNVNGTVIMYADRITGSMAYTIAETERRRKIQEAYNREHGIVPQTIISPVKDTLQRHLR 636

Query: 739 E--------DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           +        D  T  ++ D   +  S ++ +  +  L K+M  AA +L FEEAA +RD+I
Sbjct: 637 QTGYQADNYDGKTAKMAEDL-PVYASMQELEKEIGKLEKEMQQAAADLAFEEAAALRDQI 695

Query: 791 KRLK 794
           K L+
Sbjct: 696 KALR 699


>gi|322435092|ref|YP_004217304.1| excinuclease ABC, B subunit [Acidobacterium sp. MP5ACTX9]
 gi|321162819|gb|ADW68524.1| excinuclease ABC, B subunit [Acidobacterium sp. MP5ACTX9]
          Length = 662

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/659 (53%), Positives = 472/659 (71%), Gaps = 1/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T Y P GDQP AI +L+ G+ + EK Q+LLGVTGSGKTFTMAKVIE +QRPA+++A
Sbjct: 3   FQLTTPYTPQGDQPRAIGELVAGLAAGEKDQVLLGVTGSGKTFTMAKVIEEVQRPALILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAY+P  D +IEKE++INE++D++R 
Sbjct: 63  HNKTLAAQLYHEFKQFFPNNAVEYFVSYYDYYQPEAYIPSGDLFIEKEATINEELDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D I+VSSVSCIYG+GS E+Y  M++ L+ G  ++++++   LV+  Y+R 
Sbjct: 123 SATRSLFERRDAIIVSSVSCIYGLGSPEAYYGMLLLLEKGQKIKREDITRRLVEILYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD IE+FP++ ++ A+R+ +FG++I+ +S+  PL G   +    + IY
Sbjct: 183 DVDFRRGTFRVRGDIIEVFPTY-DENAYRIELFGDEIDGLSQIDPLFGTVRQKYSRLPIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV        A   I  E++    ELE  GRL+E+QR+ QR  +DLEM+++ G C 
Sbjct: 242 PKSHYVVQPERKKAASDSILAEMEWWEKELENTGRLVESQRIHQRTRFDLEMIKSVGYCH 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +GR PGEPPPTL +Y P D LLF+DESHVT+PQ+ GM+ GD  RK  L +Y
Sbjct: 302 GIENYSRHFSGRLPGEPPPTLLDYFPRDYLLFIDESHVTVPQLHGMWHGDRSRKQNLVDY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+F+E+       I VSATPG +EL +  G++VEQIIRPTGLVDP +E
Sbjct: 362 GFRLPSAMDNRPLKFDEFEGRTGQIIYVSATPGPYELTKAAGVVVEQIIRPTGLVDPQIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EI + A    R+L+T LTKRM+EDL  Y  E  +R RYMHSE++TLE
Sbjct: 422 IRPVKGQIDDLLAEIRIRAANDQRVLVTTLTKRMSEDLANYYTEVGVRCRYMHSEIETLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI ++RDLR G++DVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 482 RIRLLRDLRKGEYDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSQGSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++  + ILYAD +T S+Q AIDET RRR KQ  +N++H I P++V   I + +  IL  D
Sbjct: 542 HLEGRAILYADKMTDSMQRAIDETDRRRTKQEAYNEEHGITPRTVIRSIDDSLATILKAD 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
            A             ++ +   ++K+L   M  AA    FE+AA++RD ++ L++  + 
Sbjct: 602 YADLTEDTQGMPDFNTQAELDTYIKNLESDMREAAKKFEFEKAAKLRDTVRELRTKEFL 660


>gi|77360053|ref|YP_339628.1| excinuclease ABC subunit B [Pseudoalteromonas haloplanktis TAC125]
 gi|90111047|sp|Q3IKF4|UVRB_PSEHT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|76874964|emb|CAI86185.1| ATP-dependent DNA excision repair enzyme UvrAC [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 664

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/659 (54%), Positives = 475/659 (72%), Gaps = 1/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++ + P+GDQP AIAQL +G+ +    Q LLG TG+GKTFTMA +I  + RP I+MA
Sbjct: 5   FQLKSHFKPAGDQPTAIAQLCEGLEAGLAHQTLLGATGTGKTFTMANIINDLNRPTIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYV  +DT+IEK++SINE I++MR 
Sbjct: 65  HNKTLAAQLYGEMKEFFPKNAVEYFVSYYDYYQPEAYVVSSDTFIEKDASINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V+SVS IYG+G  +SY +M++ LK+G+ V+Q+++L  L + QY R 
Sbjct: 125 SATKALLERRDTIIVASVSAIYGLGDPKSYMKMMLLLKVGEKVDQRDMLRRLAEIQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGT+RV G+ ++IFP+     A RV MF ++IE +S F PLTG   +++    IY
Sbjct: 185 DVDFSRGTYRVRGEVVDIFPAESSTFAIRVEMFDDEIERLSIFDPLTGAIEKHIVRTTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A++ I+EELK R  +L    +L+E QR+ QR  YD+EM+   G C 
Sbjct: 245 PKTHYVTPREKILGAIEKIQEELKDRRAQLLSANKLVEEQRVTQRTQYDIEMMRELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PG+PPPTL +Y+P+D+L+ +DESHVT+ QI  MY+GD  RK  L EY
Sbjct: 305 GIENYSRYLSGRTPGDPPPTLLDYLPDDALMIIDESHVTVSQIGAMYKGDRSRKENLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS MDNRPLRFEE+  + P TI VSATPG +EL++C G I EQ+IRPTGL+DP +E
Sbjct: 365 GFRMPSAMDNRPLRFEEFEAISPQTIYVSATPGDFELDRCVGAIAEQVIRPTGLLDPLIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI  + ++G R+L+T LTKRM+EDLT+YL E N++VRY+HS++ T+E
Sbjct: 425 VRPVGDQVDDLLSEIYKSVEKGERVLVTTLTKRMSEDLTDYLSEHNVKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  S+IQT+GRAAR
Sbjct: 485 RVEIIRDLRAGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSARSIIQTVGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-PILLE 739
           ++  + ILY D ITKS+  A+DET RRRE Q  +N +H I P S+ +KI++ +D      
Sbjct: 545 HLEGRAILYGDRITKSMAKAMDETARRREIQHAYNIEHGIEPHSLAKKILDSMDVGEEAG 604

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
                 +     +  LS K+    +K L  +MH  A +L FE+AA +RDEI  L+    
Sbjct: 605 PKDNLRLIRKESKKVLSAKEITVQIKQLDSKMHAYASDLEFEKAASVRDEIHELQQQLI 663


>gi|262368546|ref|ZP_06061875.1| excinuclease ABC [Acinetobacter johnsonii SH046]
 gi|262316224|gb|EEY97262.1| excinuclease ABC [Acinetobacter johnsonii SH046]
          Length = 673

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/668 (55%), Positives = 475/668 (71%), Gaps = 10/668 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + T+Y P+GDQP AI +L+ GI      QLLLGVTGSGKT+TMA VI   QRP IVM
Sbjct: 6   PFDLVTNYQPAGDQPQAIEKLVAGIEKGYHDQLLLGVTGSGKTYTMANVIARTQRPTIVM 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR
Sbjct: 66  AHNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAINDHIDQMR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SATRSLLER D I+V+SVS IYG+G   +Y  M++ +  GD + + +++  LV+ QY R
Sbjct: 126 LSATRSLLERRDAIIVASVSAIYGLGDPNAYMSMLLHIVQGDRIARDDIIRRLVEMQYSR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++  +RGT+R+ G+ I+IFP+  +  A R+ +F ++++ I  F PLTG+ +R V  + I
Sbjct: 186 NELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKLVRKVPRVTI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  SHYVTP+  L  A+  I+EELK RL       +LLEAQR+EQR  YDLEM++  G  
Sbjct: 246 YPKSHYVTPKDNLERAIGTIREELKERLGFFRAHDKLLEAQRIEQRTRYDLEMMQQLGYT 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+GR  GE PPTLF+Y+P+D+LL +DESHVT+PQI  MY+GD  RK  L  
Sbjct: 306 NGIENYSRHLSGRPAGEAPPTLFDYVPDDALLIIDESHVTVPQIGAMYKGDRSRKENLVN 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP++FEEW  + P TI VSATP  +ELE+ +  I EQ++RPTGL+DP +
Sbjct: 366 YGFRLPSALDNRPMQFEEWERITPATIYVSATPAKYELEKAEQ-IAEQVVRPTGLIDPEI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+DV  EIN+      R+L+T LTKRMAEDL+ YL E  ++V Y+HS++ T+
Sbjct: 425 EVRPVLTQVDDVLSEINIRKDLDERVLVTTLTKRMAEDLSSYLKEYGVKVAYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++II DLR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVKIIHDLRSGVYDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PIL 737
           RNV  K ILY D IT S+Q AIDET RRREKQ+  N+ H I P+S   +  + ID   +L
Sbjct: 545 RNVKGKAILYGDRITDSMQKAIDETARRREKQMAFNELHGIIPRSTIRQNKKDIDTGEVL 604

Query: 738 LEDAATTNI-------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            +D   + I       S D Q L    K    HL  L K+M  A+  L FE+AAR+RDEI
Sbjct: 605 TDDQVESGITDQHQTLSADEQHLLSDPKLLAKHLSKLEKEMLKASKELQFEQAARLRDEI 664

Query: 791 KRLKSSPY 798
            RLK+   
Sbjct: 665 LRLKAQLL 672


>gi|134095424|ref|YP_001100499.1| excinuclease ABC subunit B [Herminiimonas arsenicoxydans]
 gi|133739327|emb|CAL62377.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
           [Herminiimonas arsenicoxydans]
          Length = 694

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/669 (53%), Positives = 479/669 (71%), Gaps = 4/669 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA+L++GI      Q LLGVTGSGKT+T+A VI  M RPAIV
Sbjct: 22  SPFRLYQPFPPAGDQPTAIAKLVEGIEDGLFYQTLLGVTGSGKTYTVANVIARMGRPAIV 81

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+SSINE I++M
Sbjct: 82  FAPNKTLAAQLYSEFREFFPQNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQM 141

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R S T+SL+ER D +++++VS IYGIG+   Y QMI+ L+  D V Q+++++ L+  QY 
Sbjct: 142 RLSCTKSLMERRDVVIIATVSAIYGIGNPSEYHQMILTLRAKDKVSQRDVIARLIAMQYT 201

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R ++   RGTFRV GD+I+IFP+   ++A R+ MF ++IE +  F PLTG+  + +    
Sbjct: 202 RNEVDFGRGTFRVRGDTIDIFPAEHAELAIRLEMFDDEIESLQLFDPLTGRVKQKIPRFT 261

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYVTPR T+  A+  IK+EL+ RL    KE +L+E QRLEQR  +DLEM++  G 
Sbjct: 262 VYPGSHYVTPRATVLRAIDTIKDELRERLEFFRKENKLIEEQRLEQRTRFDLEMMQEIGF 321

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
            + IENYSR+L+G   G+PPPTL +Y+P+D+L+F+DESHV + Q++GMY GD  RK  L 
Sbjct: 322 TKGIENYSRHLSGAKAGDPPPTLVDYLPQDALMFMDESHVLMGQLNGMYNGDRARKTNLV 381

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPLRF+E+       + VSATP  +E       +VEQ++RPTGLVDP 
Sbjct: 382 DYGFRLPSALDNRPLRFDEFEGKMRQMVFVSATPADYENAHADQ-VVEQVVRPTGLVDPL 440

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R A TQV+D+  EI    ++  R+L+T LTKRM+E LTE+L +  I+VRY+HS++ T
Sbjct: 441 ISVRPASTQVDDLMTEITDRVKKHERVLVTTLTKRMSEQLTEFLSDNGIKVRYLHSDIDT 500

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 501 VERVEIIRDLRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRA 560

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N   ILY D +T S++ AIDET RRR KQ+  N  +NI P  +K+ I E+ID +  
Sbjct: 561 ARNLNGMAILYGDKVTDSMRRAIDETERRRAKQMAFNTANNITPVGIKKHIRELIDGVYS 620

Query: 739 EDAATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +  A    +     A+  ++S+K+    +K L KQM   A NL FE+AA++RD+++ LK 
Sbjct: 621 QQDAREEFNAAQEHAKYEAMSEKQVSKEIKRLEKQMLGHAKNLEFEKAAQVRDQLRILKE 680

Query: 796 SPYFQGLDD 804
             +    +D
Sbjct: 681 QLFGAPGED 689


>gi|296136304|ref|YP_003643546.1| excinuclease ABC, B subunit [Thiomonas intermedia K12]
 gi|295796426|gb|ADG31216.1| excinuclease ABC, B subunit [Thiomonas intermedia K12]
          Length = 697

 Score =  832 bits (2150), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/686 (53%), Positives = 484/686 (70%), Gaps = 7/686 (1%)

Query: 124 TPHRSWSINN-HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182
            P  S   +   S   + F++   Y P+GDQP AIAQL +G+      Q LLGVTGSGKT
Sbjct: 5   QPVPSLDPDKFVSYPDSPFRLYQPYPPAGDQPTAIAQLAEGLGDGLSYQTLLGVTGSGKT 64

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242
           +T+A VI  M RPAIV APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D
Sbjct: 65  YTIANVIARMGRPAIVFAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRD 124

Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302
            +IEK+S+INE I++MR SAT+SLLER D ++V+SVS IYGIG+   Y  MI+ ++ GD 
Sbjct: 125 LFIEKDSAINEHIEQMRLSATKSLLERRDVVIVASVSAIYGIGNPSDYHAMILTVRTGDR 184

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
           + Q+++++ LV+ QY+R ++   RGTFRV GD I++FP+   ++A R+ +F ++IE +S 
Sbjct: 185 MGQRDVIAQLVRMQYQRNEVDFTRGTFRVRGDRIDVFPAEHAELAVRIELFDDEIETLSL 244

Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
           F PLTG   + +    IY +SHYVTPR  +  A++ IK+EL+ R  EL   G+L+EAQRL
Sbjct: 245 FDPLTGVVRQKIPRFTIYPSSHYVTPREKVLEAVEGIKQELRERSKELTGMGKLVEAQRL 304

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482
           EQR  +DLEML   G C+ IENYSR+L+G  PGEPPPTL +Y+P D+++F+DESHV I Q
Sbjct: 305 EQRTRFDLEMLTEIGHCKGIENYSRHLSGAAPGEPPPTLVDYLPPDAIMFLDESHVLIGQ 364

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542
            +GMY GD  RK TL +YGFRLPS +DNRPL+F E+      T+ VSATP  +E +    
Sbjct: 365 FNGMYNGDRARKQTLVDYGFRLPSALDNRPLKFAEFERKMRQTVFVSATPADYESQHADQ 424

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
            +VEQ++RPTGLVDP +E+R A +QV+DV  EI L   +G R+L+T LTKRMAE LT+YL
Sbjct: 425 -VVEQVVRPTGLVDPLIEVRPASSQVDDVLGEIRLRVNKGERVLITTLTKRMAEQLTDYL 483

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            E  ++VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKE
Sbjct: 484 DENGVKVRYLHSDIDTVERVEILRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKE 543

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
           GFLRS  SLIQTIGRAARNVN   ILY D IT S++ AIDET RRR KQ+  N +H I P
Sbjct: 544 GFLRSTRSLIQTIGRAARNVNGMAILYGDRITDSMRRAIDETERRRAKQIAFNTEHGITP 603

Query: 723 QSVKEKIMEVIDPILLEDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNL 778
            ++ + + ++ID ++             ++++     + +     +K L K+M   A NL
Sbjct: 604 TALNKSVRDLIDGVVQTPGKGLRAGSVEREIAELQIDNAQDVAREIKRLEKRMIEHARNL 663

Query: 779 NFEEAARIRDEIKRLKSSPYFQGLDD 804
            FE+AAR+RD++  L+   +  G DD
Sbjct: 664 EFEQAARVRDQLGLLRQRVFG-GGDD 688


>gi|15892189|ref|NP_359903.1| excinuclease ABC subunit B [Rickettsia conorii str. Malish 7]
 gi|21542287|sp|Q92J03|UVRB_RICCN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|15619321|gb|AAL02804.1| excinuclease ABC subunit B [Rickettsia conorii str. Malish 7]
          Length = 661

 Score =  832 bits (2150), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/661 (59%), Positives = 491/661 (74%), Gaps = 3/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + ++Y P+GDQP AI +++ G+ S+++ Q+LLG+TGSGKTFTMA +IE   RP +
Sbjct: 1   MNNFSIISEYKPAGDQPKAIDEIIAGLSSKKRSQMLLGITGSGKTFTMANIIERTNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MA NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID 
Sbjct: 61  IMAHNKTLAAQIYSEMKSLFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRH+ATRSLLER D IVVSSVSCIYG+GS + Y QM+V L+ G S  + +LL+ L+  QY
Sbjct: 121 MRHAATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMMVNLEPGQSYPRDQLLNDLINLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DIG  RG FRV GD+I+IFPSH  D AWR+S FGN++E I EF PLTG+K+  ++  
Sbjct: 181 ERNDIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLAKLDKA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++ NSH+V P+ T+N A+  I+EEL+ RL  L+ + + LE QRL QR  YDLEML  TG
Sbjct: 241 MVFGNSHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC+ +ENYSR+ TGRN GEPPPTLFEY+PED+LLFVDESHV++PQI  MY GD  RK  L
Sbjct: 301 SCKGVENYSRFFTGRNAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKKVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEEW+  RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLKFEEWDKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              I+ A  QVED+  EI     QG R+L+T LTK+MAEDLT YL E   +  Y+HS V 
Sbjct: 421 ECIIKPATNQVEDLISEIQTTIAQGFRVLVTTLTKKMAEDLTAYLQELKYKTSYLHSNVH 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI+RDLR G  DVLVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 481 TLERIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VILYAD +TKSI  A+ ET RRR+ Q E+N+KH I P+++   I  + +   
Sbjct: 541 AARNSAGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGIIPKTINRAIHALAE--- 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            E   +      A  L  +  K K H+  L+K+M  AA NL FE+A ++RD++K L+ + 
Sbjct: 598 FEKIDSKLDKKQAHTLFDNPAKLKTHIDKLKKEMLKAASNLEFEQAVKLRDQLKTLEEAA 657

Query: 798 Y 798
            
Sbjct: 658 L 658


>gi|88797993|ref|ZP_01113580.1| excinuclease ABC subunit B [Reinekea sp. MED297]
 gi|88779190|gb|EAR10378.1| excinuclease ABC subunit B [Reinekea sp. MED297]
          Length = 674

 Score =  832 bits (2150), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/664 (55%), Positives = 489/664 (73%), Gaps = 13/664 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P+GDQPAAI +L+ G+++    Q LLGVTGSGKT+TMAKV+EA+QRP I
Sbjct: 1   MKPFKVVSKYEPAGDQPAAITKLVDGLNAGLAAQTLLGVTGSGKTYTMAKVVEAVQRPTI 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           VM  NK LAAQLYSEF+ FFP+NAVEYFVSYYDYYQPEAYVP +DT+I+K+SS+NE I++
Sbjct: 61  VMVHNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIDKDSSVNEHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D ++V++VS IYG+GS +SY +M++ L+ GD ++Q+ +L  L   QY
Sbjct: 121 MRLSATKALLERRDTLIVATVSAIYGLGSPDSYLKMVLHLRKGDMIDQRGILRQLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D    RGT+RV GD ++IFP+  E  A RV +F ++IE++S F PLTG+ ++ +   
Sbjct: 181 QRNDTDFGRGTYRVRGDILDIFPAESELEAIRVELFDDEIEKLSLFDPLTGEVLQKLNRY 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR T+  A + I+ ELK RL   E + RL+EAQRLEQR  YDLEM+   G
Sbjct: 241 TIYPKTHYVTPRETILNACEQIEVELKDRLKVFESDNRLVEAQRLEQRTRYDLEMMRELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L+G  PGE PPTL+ Y+P D+L+F+DESHV+IPQI  MY+GD  RK TL
Sbjct: 301 FCTGVENYSRFLSGAKPGEAPPTLYSYLPADTLMFIDESHVSIPQIGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL+FEEW  + P ++ VSATPG +E E  Q   V+Q++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPLKFEEWERMAPQSVYVSATPGKYEAEHSQQ-TVDQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R A TQV+DV +EI L  +   R+L+T LTKRMAEDLT+YL++  IRVRY+HS++ 
Sbjct: 420 IIEVRPATTQVDDVLEEIRLRVEVNERVLITTLTKRMAEDLTDYLHDNGIRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N K ILYAD +T S++ AI+ET RRREKQ+ HN  +NI PQ++ + + ++ID   
Sbjct: 540 AARNLNGKAILYADRMTGSMERAIEETERRREKQIAHNTANNITPQALNKAVTDIIDGTP 599

Query: 738 LEDAATTNISIDAQQLS------------LSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
                   ++ + +++             +S  +    +     +MH  A +L FEEAA 
Sbjct: 600 QAPGRKGKLARNKKKVEHITGEEAKSFMQMSAAELSKEITRTEDRMHKLARDLKFEEAAG 659

Query: 786 IRDE 789
           +RD+
Sbjct: 660 LRDQ 663


>gi|157964268|ref|YP_001499092.1| excinuclease ABC subunit B [Rickettsia massiliae MTU5]
 gi|189037993|sp|A8F0V9|UVRB_RICM5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|157844044|gb|ABV84545.1| Excinuclease ABC subunit B [Rickettsia massiliae MTU5]
          Length = 661

 Score =  832 bits (2150), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/661 (58%), Positives = 489/661 (73%), Gaps = 3/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + ++Y P+GDQP AI +++ G+ S+++ Q+LLG+TGSGKTFTMA +IE   RP +
Sbjct: 1   MNNFSIISEYKPAGDQPKAIDEIIAGLSSKKRSQILLGITGSGKTFTMANIIERTNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MA NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID 
Sbjct: 61  IMAHNKTLAAQIYSEMKSIFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRH+ATRSLLER D IVVSSVSCIYG+GS + Y QM+V L+ G S  + +LL+ L+  QY
Sbjct: 121 MRHAATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMMVNLEPGQSYPRDQLLNDLINLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DIG  RG FRV GD+I+IFPSH  + AWR+S FGN++E I EF PLTG K+  ++  
Sbjct: 181 ERNDIGFERGCFRVKGDNIDIFPSHYSNKAWRLSFFGNELEYIHEFDPLTGAKLAKLDKA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++ NSH+V P+ T+N A+  I+EEL+ RL  L+ + + LE QRL QR  YDLEML  TG
Sbjct: 241 MVFGNSHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           +C+ +ENYSR+ TGRN GEPPPTLFEY+PED+LLFVDESHV++PQI  MY GD  RK  L
Sbjct: 301 NCKGVENYSRFFTGRNAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKEVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEEW   RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              I+ A  Q+ED+  EI     +G R+L+T LTK+MAEDLT YL E   +  Y+HS V 
Sbjct: 421 ECIIKPATNQIEDLISEIQTTIAKGFRVLVTTLTKKMAEDLTAYLQELKYKTSYLHSHVH 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI+RDLR G  D+LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 481 TLERIEILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VILYAD +TKSI  A+ ET RRR+ Q E+N KH I P+++   I  + +   
Sbjct: 541 AARNSEGRVILYADKMTKSIDKAVSETLRRRQIQQEYNAKHGIIPKTINRTIHALAE--- 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            E   +      A  L  +  K K H+  L+K+M  AA NL FE+AA++RD++K L+ + 
Sbjct: 598 FEKIDSKLDKKQAHTLFDNPAKLKTHIDKLKKEMLKAASNLEFEQAAKLRDQLKTLEEAA 657

Query: 798 Y 798
            
Sbjct: 658 L 658


>gi|329118198|ref|ZP_08246908.1| excision endonuclease subunit UvrB [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465619|gb|EGF11894.1| excision endonuclease subunit UvrB [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 675

 Score =  832 bits (2150), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/667 (53%), Positives = 483/667 (72%), Gaps = 5/667 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           + + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPA
Sbjct: 7   ENSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPA 66

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           I+MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I+
Sbjct: 67  IIMAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIE 126

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  Q
Sbjct: 127 QMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQ 186

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V  
Sbjct: 187 YERGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGR 246

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   
Sbjct: 247 YTVFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEM 306

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  
Sbjct: 307 GFCKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQN 366

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS  DNRPL+F E+  + P TI VSATP  +E E   G +VEQ++RPTGLVD
Sbjct: 367 LVDYGFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYEEEHA-GQVVEQVVRPTGLVD 425

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++
Sbjct: 426 PQIIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDI 485

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIG
Sbjct: 486 DTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIG 545

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H+I PQ +K+++ ++ID +
Sbjct: 546 RAARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHSIVPQQIKKQVKDIIDGV 605

Query: 737 LLEDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ 
Sbjct: 606 YHEEDSGKGRLKGKSKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRN 665

Query: 793 LKSSPYF 799
           +K +  F
Sbjct: 666 IKENLLF 672


>gi|238650441|ref|YP_002916293.1| excinuclease ABC subunit B [Rickettsia peacockii str. Rustic]
 gi|259710332|sp|C4K0Z4|UVRB_RICPU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238624539|gb|ACR47245.1| excinuclease ABC subunit B [Rickettsia peacockii str. Rustic]
          Length = 661

 Score =  832 bits (2150), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/661 (59%), Positives = 492/661 (74%), Gaps = 3/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + ++Y P+GDQP AI +++ G+ S+++ Q+LLG+TGSGKTFTMA +IE   RP +
Sbjct: 1   MNNFSIISEYKPAGDQPKAIDEIIAGLSSKKRSQMLLGITGSGKTFTMANIIERTNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MA NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID 
Sbjct: 61  IMAHNKTLAAQIYSEMKSLFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRH+ATRSLLER D IVVSSVSCIYG+GS + Y QM+V L+ G S  + +LL+ L+  QY
Sbjct: 121 MRHAATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMMVNLEPGQSYLRDQLLNDLINLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DIG  RG FRV GD+I+IFPSH  D AWR+S FGN++E I EF PLTG+K+  ++  
Sbjct: 181 ERNDIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLAKLDKA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++ NSH+V P+ T+N A+  I+EEL+ RL  L+ + + LE QRL QR  YDLEML  TG
Sbjct: 241 MVFGNSHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC+ +ENYSR+ TGR+ GEPPPTLFEY+PED+LLFVDESHV++PQI  MY GD  RK  L
Sbjct: 301 SCKGVENYSRFFTGRHAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKKVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEEW+  RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLKFEEWDKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              I+ A  QVED+  EI     QG R+L+T LTK+MAEDLT YL E   +  Y+HS V 
Sbjct: 421 ECIIKPATNQVEDLISEIQTTIAQGFRVLVTTLTKKMAEDLTAYLQELKYKTSYLHSNVH 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI+RDLR G  DVLVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 481 TLERIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VILYAD +TKSI  A+ ET RRR+ Q E+N+KH I P+++   I  + +   
Sbjct: 541 AARNSAGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGIIPKTINRAIHALAE--- 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            E   +      A  L  +  K K H+  L+K+M  AA NL FE+A ++RD++K L+++ 
Sbjct: 598 FEKIDSKLDKKQAHTLFDNPAKLKTHIDKLKKEMLKAASNLEFEQAVKLRDQLKTLEAAA 657

Query: 798 Y 798
            
Sbjct: 658 L 658


>gi|169632767|ref|YP_001706503.1| excinuclease ABC subunit B [Acinetobacter baumannii SDF]
 gi|169151559|emb|CAP00329.1| excinuclease ABC subunit B (ATP-dependent DNA excision repair
           enzyme UvrAC) [Acinetobacter baumannii]
          Length = 673

 Score =  832 bits (2150), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/668 (55%), Positives = 481/668 (72%), Gaps = 10/668 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + T Y P+GDQP AI +L+ GI    + QLLLGVTGSGKT+TMA VI   QRP IVM
Sbjct: 6   PFDLVTHYQPAGDQPQAIEKLVNGIEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVM 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR
Sbjct: 66  AHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V ++E++  LV+ QY R
Sbjct: 126 LSATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVQGDRVSREEIIRRLVEMQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++  +RGT+R+ G+ I+IFP+  +  A R+ +F ++++ I  F PLTG+ +R V  + I
Sbjct: 186 NELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVPRVTI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  SHYVTP+  L  A+  IK+EL+ +L    +  +LLEAQR+EQR  YDLEM++  G  
Sbjct: 246 YPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYT 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+GR+ GE PPTLF+Y+PED+LL +DESHVT+PQI  MY+GD  RK  L  
Sbjct: 306 NGIENYSRHLSGRSAGEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVN 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP++FEEW  + PTTI VSATP  +ELE+ +  +VEQ++RPTGL+DP +
Sbjct: 366 YGFRLPSALDNRPMKFEEWERIVPTTIFVSATPARYELEKSEQ-VVEQVVRPTGLIDPEI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+DV  EIN+      R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T+
Sbjct: 425 EVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++II +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  K ILYADTIT S++ AIDET RRR KQ+E N+ H I P+S   + ++ ID   + 
Sbjct: 545 RNVKGKAILYADTITDSMRKAIDETERRRTKQIEFNELHGITPRSAVRQAVKEIDTGEVL 604

Query: 740 DAATTNISIDAQQLSLSKKKG---------KAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                +  +  Q  +LS  +            H+  L K+M  A+ +L FE+AARIRDEI
Sbjct: 605 SDDQIDEKVLEQAQALSADERHILSDPKLFSKHITKLEKEMLKASKDLQFEQAARIRDEI 664

Query: 791 KRLKSSPY 798
            RLK+   
Sbjct: 665 VRLKAQML 672


>gi|145224140|ref|YP_001134818.1| excinuclease ABC subunit B [Mycobacterium gilvum PYR-GCK]
 gi|145216626|gb|ABP46030.1| Excinuclease ABC subunit B [Mycobacterium gilvum PYR-GCK]
          Length = 719

 Score =  832 bits (2150), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/704 (51%), Positives = 484/704 (68%), Gaps = 30/704 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             +++  +    F++ ++Y P+GDQPAAI +L + I + EK  +LLG TG+GK+ T A +
Sbjct: 16  RPVDDVVRSGARFEVVSEYEPAGDQPAAIEELERRIRAGEKDVVLLGATGTGKSATTAWL 75

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+
Sbjct: 76  IERLQRPTLVMAPNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKD 135

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN+ ++R+RHSAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+GD V +  L
Sbjct: 136 SSINDDVERLRHSATSNLLSRRDVVVVASVSCIYGLGTPQSYMDRSVELKVGDEVPRDSL 195

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R D+   RGTFRV GD++EI PS+ E++A R+  FG++IEE+   +PLTG
Sbjct: 196 LRLLVDVQYTRNDMSFTRGTFRVRGDTVEIIPSY-EELAVRIEFFGDEIEELYYLHPLTG 254

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             IR V++++I+  +HYV     +  A+  I+ EL+ RL ELE +G+LLEAQRL  R  Y
Sbjct: 255 DIIRKVDSLRIFPATHYVAGPERMAAAISTIEAELEARLAELEGQGKLLEAQRLRMRTNY 314

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G C  IENYSR++ GR  G  P TL +Y PED LL +DESHVT+PQI GMY 
Sbjct: 315 DIEMMRQVGFCSGIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYE 374

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L ++GFRLPS +DNRPL +EE+      T+ +SATPG++EL Q  G  VEQ+
Sbjct: 375 GDMSRKRNLVDFGFRLPSAVDNRPLTWEEFADRIGQTVYLSATPGNFELAQTGGEFVEQV 434

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++  + Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 435 IRPTGLVDPQVIVKPTKGQIDDLIGEIRKRTERDERVLVTTLTKKMAEDLTDYLLEMGIR 494

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSEV TL R+E++R LRLG++DVL+GINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 495 VRYLHSEVDTLRRVELLRQLRLGEYDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSP 554

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +V +YAD IT S++ AIDET RRR KQ+ +N +  I+PQ +++K
Sbjct: 555 RSLIQTIGRAARNVSGEVHMYADKITDSMKQAIDETERRRAKQIAYNTERGIDPQPLRKK 614

Query: 729 IMEVIDPILLEDAATTNISIDA---------------------------QQLSLSKKKGK 761
           I +++D +  E   T  + I                                ++ + +  
Sbjct: 615 IADILDQVYREADDTEAVEIGGSGRNASRGRRAPGEPGRAVSAGVYEGRDTKNMPRAELA 674

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             +K L  QM  AA +L FE AARIRDEI+ LK     +G+D +
Sbjct: 675 DLIKDLTAQMMAAARDLQFELAARIRDEIQDLKKE--LRGMDAA 716


>gi|227548123|ref|ZP_03978172.1| excision endonuclease subunit B [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079785|gb|EEI17748.1| excision endonuclease subunit B [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 697

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/684 (50%), Positives = 471/684 (68%), Gaps = 9/684 (1%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
               +    +    F++ ++Y PSGDQP AI +L + ++  EK  +LLG TG+GK+ T A
Sbjct: 14  EFRPVGEIERREKPFEVISEYQPSGDQPGAIKELNERLNRGEKDVVLLGATGTGKSATAA 73

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            +IE  QRP +VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIE
Sbjct: 74  WLIEKQQRPTLVMAPNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIE 133

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+SSIN+ ++R+RHSAT  LL R D +VV+SVSCIYG+G+ +SY    + L++G+ VE+ 
Sbjct: 134 KDSSINDDVERLRHSATSVLLSRRDVVVVASVSCIYGLGTPQSYLDRSIVLRVGEEVERD 193

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
             L  LV  QY+R DI   RGTFRV GD+++I P++ E+VA RV  FG++++E+   +PL
Sbjct: 194 RFLRLLVDVQYERNDIDFKRGTFRVKGDTVDIIPAY-EEVAVRVEFFGDEVDELYYIHPL 252

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG+ +   E ++I+  +HYV     +  A++ IK EL  RL +LE  G+LLEAQRL  R 
Sbjct: 253 TGEVLSREEEVRIFPATHYVATDDRMEKAIEAIKLELADRLEDLENRGKLLEAQRLRMRT 312

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
            YDLEM++  G C  IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM
Sbjct: 313 EYDLEMIQQVGFCSGIENYSRHMDGRPAGSAPATLIDYFPEDFLTIIDESHVTVPQIGGM 372

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           + GD  RK  L E+GFRLPS +DNRPL+F+E+       + +SATPG +ELE   G  VE
Sbjct: 373 FEGDMSRKRNLVEFGFRLPSAVDNRPLKFDEFEARMGQVVYMSATPGDYELEATGGEFVE 432

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q+IRPTGLVDP V +R  + Q++D+ +EI     +  R+L+T LTKRMAEDLT+YL +  
Sbjct: 433 QVIRPTGLVDPQVHVRPTKGQIDDLIEEIRQRVSRDERVLVTTLTKRMAEDLTDYLLDNG 492

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           I+VRY+HS++ TL+R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLR
Sbjct: 493 IKVRYLHSDIDTLQRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLR 552

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S  SLIQTIGRAARNV+  VI+YAD +T S++ AI+ET RRREKQL +N +H I+PQ ++
Sbjct: 553 STKSLIQTIGRAARNVSGAVIMYADKVTDSMRDAIEETERRREKQLAYNVEHGIDPQPLR 612

Query: 727 EKIMEVIDPIL------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
           +KI +++D +               +       S+S K  +  +  L  QM  AA  L F
Sbjct: 613 KKIADILDQVYDNADGEETAGGEAAVVEKPDVASMSSKDVQKLIDDLTAQMGAAARELKF 672

Query: 781 EEAARIRDEIKRLKSSPYFQGLDD 804
           E A R+RDEI  L+     +G+ +
Sbjct: 673 ELAGRLRDEIAELRKE--LRGMKE 694


>gi|300813073|ref|ZP_07093451.1| excinuclease ABC, B subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300495914|gb|EFK31058.1| excinuclease ABC, B subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 680

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/665 (51%), Positives = 470/665 (70%), Gaps = 2/665 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +D   F++ + Y P+GDQ  AI QL  G  + +K Q+L G TG+GKT+TMA VI  M 
Sbjct: 3   KRQDNNKFELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAKMN 62

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P +V+  NK L  QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN+
Sbjct: 63  KPTLVITHNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASIND 122

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +ID++RH+AT +L+ RND IVV+SVSCIYG+G    Y+  ++ +  G   E+  LL  LV
Sbjct: 123 EIDQLRHAATSALMSRNDVIVVASVSCIYGLGDPREYAASVLNVYTGQEYERNTLLRDLV 182

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R DI   RG FRV GD +E+FP+   D A+R+  FG++I+ I E  PLTG+    
Sbjct: 183 NIQYDRNDIDFQRGRFRVRGDVVEVFPAGYSDRAYRIEFFGDEIDRIVEVDPLTGEVHGV 242

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            ++I ++  +H++T    L  A+  IK E+  ++ + EKEG+LLEA+R++QR TYDLEML
Sbjct: 243 RDSISLFPATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLEML 302

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
              G    IENYSR +  R  GEPP TL ++ P+DSL+ +DESH T+P+I  MY GD +R
Sbjct: 303 REVGYTNGIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDRNR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL +YGFRLPS +DNRPL+ EE+       + VSATPG +EL Q    IVEQ+IRPTG
Sbjct: 363 KQTLIDYGFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNQT-SRIVEQVIRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP +E+R    Q++D+  EINL  ++  R+ +T LTK+MAEDLT+YL +  I+VRY+H
Sbjct: 422 LLDPKIEVRPIEGQIDDLVAEINLRIERKERVFVTTLTKKMAEDLTDYLKDLGIKVRYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++KTLER++IIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   LIQ
Sbjct: 482 SDIKTLERMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLIQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N +VI+YAD IT S++LAIDET RRR  Q+++N++H I P+++ + + ++I
Sbjct: 542 TMGRAARNANGEVIMYADRITDSMKLAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDMI 601

Query: 734 DPILLEDAATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             +  +  A  + S  D     L+ K+ K  + +L++QM  AA  L+FE AA +RD I  
Sbjct: 602 SVVKADKEAEKSDSFADLNFDELTAKQKKQMIANLKEQMQDAAKRLDFESAANLRDAIIE 661

Query: 793 LKSSP 797
           L+ S 
Sbjct: 662 LEGSV 666


>gi|194098909|ref|YP_002001974.1| excinuclease ABC subunit B [Neisseria gonorrhoeae NCCP11945]
 gi|239999193|ref|ZP_04719117.1| excinuclease ABC subunit B [Neisseria gonorrhoeae 35/02]
 gi|268595020|ref|ZP_06129187.1| UvrABC system protein B [Neisseria gonorrhoeae 35/02]
 gi|193934199|gb|ACF30023.1| UvrABC system protein B [Neisseria gonorrhoeae NCCP11945]
 gi|268548409|gb|EEZ43827.1| UvrABC system protein B [Neisseria gonorrhoeae 35/02]
          Length = 675

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/665 (53%), Positives = 481/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDALRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ A+DET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDSGKGRRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRNIK 667

Query: 795 SSPYF 799
            +  F
Sbjct: 668 ENLLF 672


>gi|312198693|ref|YP_004018754.1| excinuclease ABC, B subunit [Frankia sp. EuI1c]
 gi|311230029|gb|ADP82884.1| excinuclease ABC, B subunit [Frankia sp. EuI1c]
          Length = 700

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/697 (51%), Positives = 485/697 (69%), Gaps = 31/697 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N+ +  T F++ +DY PSGDQPAAI +L + I + EK  +LLG TG+GK+ T A +IE +
Sbjct: 2   NNERSATPFKVVSDYQPSGDQPAAIKELARRIRAGEKDLVLLGATGTGKSATTAWLIEEL 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +VMAPNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN
Sbjct: 62  QRPTLVMAPNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSIN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           E+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +V++ +G+ +++  LL  L
Sbjct: 122 EEVERLRHSATMSLLTRRDVIVVASVSCIYGLGTPQEYIDRMVKISVGEEIDRDLLLRRL 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QY R D+   RGTFRV GD++E+FP + E++A R+ +FG++IE IS  +PLTG+ +R
Sbjct: 182 VDVQYTRNDLAFDRGTFRVRGDTVEVFPVY-EELAVRIELFGDEIERISYLHPLTGEIVR 240

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V+ + I+  SHYV     +  A+  I+EEL  RL +LE +G+LLEAQRL  R TYD+EM
Sbjct: 241 EVDQVFIFPASHYVAGPERMERAITGIEEELATRLEQLEGQGKLLEAQRLRMRTTYDIEM 300

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           +   G C  IENYSR++ GR  G  P TL +Y P+D L+ +DESH T+PQI GMY GD  
Sbjct: 301 MRQVGFCSGIENYSRHIDGRAAGTAPHTLLDYFPDDFLMVIDESHNTVPQIGGMYEGDMS 360

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L ++GFRLPS  DNRPLR+EE+      T+ +SATPG +EL +  G IVEQIIRPT
Sbjct: 361 RKRNLVDHGFRLPSATDNRPLRWEEFLERVGQTVYLSATPGPYELGKADG-IVEQIIRPT 419

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP + ++  + Q++D+  EI L A++  R+L+T LTK+M+EDLT+YL E  IRVRY+
Sbjct: 420 GLIDPEIVLKPTKGQIDDLIHEIRLRAERDERVLVTTLTKKMSEDLTDYLLELGIRVRYL 479

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSEV TL R+E++ +LR G +DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS+ SLI
Sbjct: 480 HSEVDTLRRVELLTELRRGDYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSERSLI 539

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV  +V +YAD IT S++ AIDET RRR  Q+ +N+KH ++PQ +++K+M++
Sbjct: 540 QTIGRAARNVAGQVHMYADKITPSMRTAIDETNRRRALQVAYNEKHGLDPQPLRKKVMDI 599

Query: 733 IDPILLEDAATTNISID---------------------------AQQLSLSKKKGKAHLK 765
           +D ++ E+A                                   A+   + +      ++
Sbjct: 600 LDDMVRENADGEMYGGGRAQSRGKAPVPGMKSRGGKQDAVGRYAAELAGMPRHDLANLIR 659

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGL 802
            L  QMH AA  L FE AAR+RDEI  LK     +G+
Sbjct: 660 QLDDQMHEAAKELQFELAARLRDEIAELKKE--LRGM 694


>gi|157375183|ref|YP_001473783.1| excinuclease ABC subunit B [Shewanella sediminis HAW-EB3]
 gi|157317557|gb|ABV36655.1| excinuclease ABC, B subunit [Shewanella sediminis HAW-EB3]
          Length = 675

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/676 (53%), Positives = 484/676 (71%), Gaps = 11/676 (1%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           +  +S   + FQ+++ Y P+GDQP AI +L+ GI S    Q LLGVTGSGKTFT+A VI+
Sbjct: 1   MGKNSVTESTFQLESQYSPAGDQPKAIEKLVDGIESGVACQTLLGVTGSGKTFTIANVIK 60

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            + RP I+MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP T+T+IEK++S
Sbjct: 61  QLARPTIIMAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTNTFIEKDAS 120

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +N  I++MR SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD ++Q+++L 
Sbjct: 121 VNAHIEQMRLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDFMDQRDILK 180

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            L + QY R DI + RGT+RV G+ I+IFP+  +  A RV +F  +IE +S F PLTG  
Sbjct: 181 RLSELQYTRNDIELKRGTYRVRGEVIDIFPADSDKEAIRVELFDVEIERLSLFDPLTGHI 240

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
            + +    IY  SHYVTPR  +  A + IKEEL++R  +L    +L+EAQR+ +R+ YD+
Sbjct: 241 SKRIARTTIYPKSHYVTPREKILAATEEIKEELRIRKKQLLDNNKLIEAQRINERVQYDI 300

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   G C  IENYSRYL+GR  G+ PPTL +Y+P+D LL +DESHVT+PQI  MY+GD
Sbjct: 301 EMMTELGYCSGIENYSRYLSGRAEGDGPPTLLDYLPDDGLLIIDESHVTVPQIGAMYKGD 360

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK+ L EYGFRLPS +DNRPL+FEE+  L P TI VSATP  +E+++  G + +Q+IR
Sbjct: 361 RSRKSNLVEYGFRLPSALDNRPLKFEEFERLMPQTIYVSATPSQYEVDKSDGEVAQQVIR 420

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DP +E+R    QV+D+  E+    +   R+L+T LTKRM+EDL+EYL E  I+VR
Sbjct: 421 PTGLLDPVLEVRPIAIQVDDLLSEVAQRVKVNERVLVTTLTKRMSEDLSEYLDEHGIKVR 480

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ S
Sbjct: 481 YLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVCILDADKEGFLRSERS 540

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARN+N KVILYAD IT S+  A+ ET RRR+ Q + N  + I P+ V +KI 
Sbjct: 541 LIQTIGRAARNINGKVILYADKITDSMSRAMGETERRRKLQHQFNLDNGIVPKGVSKKIT 600

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKK--------GKAHLKSLRKQMHLAADNLNFEE 782
           +V+D   + D +     +D  +++ S+              + +L KQMH  A NL FE+
Sbjct: 601 DVMD---VGDKSADGQDVDNNKVAESRAPYGGPDIATLSHQMDALEKQMHEHAKNLEFEQ 657

Query: 783 AARIRDEIKRLKSSPY 798
           AA +RD++ +L+ +  
Sbjct: 658 AAALRDQVAKLREALI 673


>gi|229551769|ref|ZP_04440494.1| excision endonuclease subunit UvrB [Lactobacillus rhamnosus LMS2-1]
 gi|258507918|ref|YP_003170669.1| excinuclease ABC subunit B [Lactobacillus rhamnosus GG]
 gi|258539167|ref|YP_003173666.1| excinuclease ABC subunit B [Lactobacillus rhamnosus Lc 705]
 gi|229314900|gb|EEN80873.1| excision endonuclease subunit UvrB [Lactobacillus rhamnosus LMS2-1]
 gi|257147845|emb|CAR86818.1| Excinuclease ABC, subunit B [Lactobacillus rhamnosus GG]
 gi|257150843|emb|CAR89815.1| Excinuclease ABC, subunit B [Lactobacillus rhamnosus Lc 705]
 gi|259649245|dbj|BAI41407.1| excinuclease ABC subunit B [Lactobacillus rhamnosus GG]
          Length = 671

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/659 (52%), Positives = 460/659 (69%), Gaps = 4/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AIA+L KG    +K Q+LLG TG+GKTFTM+ +I  + +P ++++
Sbjct: 10  FDLVSPYKPAGDQPQAIAKLTKGFEEGKKAQILLGATGTGKTFTMSNIIANLNKPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVS I+G+G    Y   ++ L+ G ++++  LL  LV  Q+ R 
Sbjct: 130 SATSALLERNDVIVVASVSSIFGLGDPHEYKNHVLSLRTGMTIDRNTLLRQLVDIQFDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  +D A RV  FG++I+ I+E   LTG+ I   + + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDDHAIRVEFFGDEIDRITEVDALTGEVIGTRDHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I  EL+ RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFMTSDEQMERAIKSISAELEDRLKVLRGENKLLEAQRLEQRTNYDIEMMREMGFTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGEPP TL ++ P+D  + VDESHVT+PQ+ GMY GD  RK  L  Y
Sbjct: 310 GIENYSRHMDGRKPGEPPYTLLDFFPKDFTIMVDESHVTMPQVKGMYNGDRARKQMLINY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+ +E+       + VSATPG +EL +  +  I EQIIRPTGL+DP +
Sbjct: 370 GFRLPSALDNRPLKIDEFEKHVKRILYVSATPGPYELSRVPKEDIAEQIIRPTGLLDPKI 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EIN       R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTL
Sbjct: 430 EVRPVMGQIDDLVGEINKRIDAHERVFITTLTKKMAEDLTDYLKDMGIKVRYLHSDIKTL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +IIRDLRLGKFDVL+GINLLREG+D+PE  L+AILDADKEGFLR++ SLIQTIGRA+
Sbjct: 490 ERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRAERSLIQTIGRAS 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736
           RN + KVI+YAD +T S++ AIDET RRR  Q + N++H+I P+++ + I   I   +  
Sbjct: 550 RNEHGKVIMYADKVTDSMKAAIDETRRRRAIQEKFNEEHHIQPKTIIKPIRAAISTYEQS 609

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             E A       +     +SK   K  + +LR QM  AA  L+FE+AA +RD I  L++
Sbjct: 610 DDEKADAKKTFAEVDYEDMSKADKKELVANLRSQMQAAAKKLDFEQAASLRDTILELQA 668


>gi|111017990|ref|YP_700962.1| excinuclease ABC subunit B [Rhodococcus jostii RHA1]
 gi|110817520|gb|ABG92804.1| excision nuclease ABC subunit B [Rhodococcus jostii RHA1]
          Length = 746

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/718 (50%), Positives = 485/718 (67%), Gaps = 32/718 (4%)

Query: 117 LKNGKIWTPHRSWSI-NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
             +      H  +       +    F++ +D+ P+GDQPAAIA L + I++ EK  +LLG
Sbjct: 29  FASEHPVVAHSEFRPIGEIERSEARFEVVSDHKPAGDQPAAIADLERRINAGEKDVVLLG 88

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GK+ T A +IE +QRP +VMAPNK LAAQL +E ++  P+N+VEYFVSYYDYYQPE
Sbjct: 89  ATGTGKSATTAWLIEKVQRPTLVMAPNKTLAAQLANELRDMLPNNSVEYFVSYYDYYQPE 148

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AY+ +TDTYIEK+SSIN+ ++R+RHSAT SLL R D +VV+SVSCIYG+G+ +SY    V
Sbjct: 149 AYIAQTDTYIEKDSSINDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSV 208

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
           QL++G  V +  LL  LV  QY R D+   RG+FRV GD++EI PS+ E++A R+  FG+
Sbjct: 209 QLEVGVEVPRDALLRLLVDVQYTRNDLAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGD 267

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +IE +   +PLTG  +R V++++I+  +HYV     +  A+K I+ EL+ RL +LE +G+
Sbjct: 268 EIEALYYLHPLTGDVVRKVDSVRIFPATHYVAGPERMERAVKDIEAELEERLADLEGKGK 327

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRL  R  YDLEM++  G C  IENYSR++ GR PG  P TL +Y PED LL +DE
Sbjct: 328 LLEAQRLRMRTQYDLEMIKQVGFCSGIENYSRHIDGRGPGTAPATLIDYFPEDFLLVIDE 387

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVT+PQI  MY GD  RK  L E+GFRLPS  DNRPL +EE+      T+ +SATPG +
Sbjct: 388 SHVTVPQIGAMYEGDMSRKRNLVEFGFRLPSATDNRPLTWEEFTQRIGQTVYLSATPGKY 447

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           EL Q  G  VEQ+IRPTGLVDP V ++  + Q++D+  EI   A +  R+L+T LTK+MA
Sbjct: 448 ELGQAGGEFVEQVIRPTGLVDPQVVVKPTKGQIDDLVHEIRERADRDERVLVTTLTKKMA 507

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL E  IRVRY+HS++ TL R+E++R LRLG++DVLVGINLLREGLD+PE  LVA
Sbjct: 508 EDLTDYLLELGIRVRYLHSDIDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVA 567

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS TSLIQTIGRAARNV+ +V +YAD IT S+Q AI+ET RRREKQ+ +N
Sbjct: 568 ILDADKEGFLRSSTSLIQTIGRAARNVSGQVHMYADKITDSMQHAIEETERRREKQIAYN 627

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTN----------------------------IS 747
           +K  ++PQ +++KI +++D +  E   T +                            + 
Sbjct: 628 EKMGVDPQPLRKKIADILDQVYEEAEDTASGVDVGGSGRNATRGRRAQGEAGRSVSAGVY 687

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
                 S+ + +    +K L  QM  AA +L FE A R+RDEI  LK     +G+D +
Sbjct: 688 EGRDTKSMPRAELADLVKELTNQMMNAARDLQFELAGRLRDEIADLKKE--LRGMDAA 743


>gi|238753329|ref|ZP_04614692.1| UvrABC system protein B [Yersinia ruckeri ATCC 29473]
 gi|238708282|gb|EEQ00637.1| UvrABC system protein B [Yersinia ruckeri ATCC 29473]
          Length = 672

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/667 (54%), Positives = 467/667 (70%), Gaps = 7/667 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +++ P+GDQP AI QL +G+ +    Q LLGVTGSGKTFT+A VI  + RP ++
Sbjct: 3   KLFKLHSEFKPAGDQPEAIRQLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMI 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTGQ  + +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDELALRVELFDEEVERLSLFDPLTGQLQQEIARFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  AM+ IK EL  R   L +  +L+E QR+ QR  +DLEM+   G 
Sbjct: 243 VYPKTHYVTPRERILQAMEDIKVELAQRRKVLLENNKLIEEQRIAQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRGEGEAPPTLFDYLPPDGLLIVDESHVTIPQIGGMYKGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP+RFEE+  L P TI VSATPG +ELE+    +VEQ++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSADEVVEQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQ++D+  EI   A    R+L+T LTKRMAEDLT+YL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQIDDLLSEIRQRAAINERVLVTTLTKRMAEDLTDYLVEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN+N K ILY D IT S++ AI ET RRREKQ  HN+   I PQ + +K+ +++     
Sbjct: 543 ARNLNGKAILYGDRITASMEKAISETERRREKQQAHNEALGIVPQGLNKKVGDILQLGQP 602

Query: 735 ---PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                             A   +L+ K     +  L  QM+  A NL FE+AA +RD++ 
Sbjct: 603 SLRGKARGKHGKAAAESAAAYDALTPKALDRKISELEAQMYTHAQNLEFEQAAELRDQVH 662

Query: 792 RLKSSPY 798
           +L+    
Sbjct: 663 KLRQQFI 669


>gi|261409601|ref|YP_003245842.1| excinuclease ABC subunit B [Paenibacillus sp. Y412MC10]
 gi|261286064|gb|ACX68035.1| excinuclease ABC, B subunit [Paenibacillus sp. Y412MC10]
          Length = 663

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/658 (54%), Positives = 471/658 (71%), Gaps = 3/658 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
               F++Q+++ P GDQP AI  L++G+   +K Q LLG TG+GKTFT+A+ I  + RP 
Sbjct: 7   STKSFEIQSEFQPQGDQPTAIDALVEGLRQGKKHQTLLGATGTGKTFTIAQTIAKVNRPT 66

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LAAQL SEFK FFP+N+V+YFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID
Sbjct: 67  LVIAHNKTLAAQLASEFKEFFPNNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSSINEEID 126

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++RHSAT SL ER D I+V+SVSCIYG+GS   Y +M++ L++G    + E+LS LV  Q
Sbjct: 127 KLRHSATSSLFERRDVIIVASVSCIYGLGSPHEYGEMLLSLRVGMEKPRNEILSRLVDIQ 186

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R DI  +RGTFRV GD +EIFP+   + A RV +FG++IE I+E   LTG+ +   E 
Sbjct: 187 YQRNDINFVRGTFRVRGDVVEIFPASKGEHAVRVELFGDEIERITEIDVLTGELVGEREH 246

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           I I+  SH+VT   T+  A+  I+ EL+ RL  L  EG+LLEAQRLEQR  YD+EM++  
Sbjct: 247 IAIFPASHFVTREETMRVALVNIERELEERLELLRSEGKLLEAQRLEQRTRYDIEMMKEV 306

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS  LT R PG  P TL +Y P+D L  +DESHVT+PQI  MY GD  RK  
Sbjct: 307 GFCSGIENYSGPLTFREPGATPYTLLDYFPDDMLFVIDESHVTLPQIRAMYNGDRARKTV 366

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L ++GFRLPS +DNRPL+FEE+       I VSATPG +E+E C   +VEQIIRPTGL+D
Sbjct: 367 LVDHGFRLPSALDNRPLKFEEFEEKVNQIIYVSATPGPYEMEHC-DTMVEQIIRPTGLLD 425

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +++R    Q++D+  EI+    +  R+L+T LTK+MAEDLT+YL E  I+VRYMHS++
Sbjct: 426 PIIDVRPTEGQIDDLIGEIHDRVDRDERVLVTTLTKKMAEDLTDYLKEIGIKVRYMHSDI 485

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           KTLER++I+RDLRLG F VLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIG
Sbjct: 486 KTLERMQILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRSDRSLIQTIG 545

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN   KVI+Y D IT S+  AI ET RRR  Q+ +N++H I PQ++++K+ +VI+  
Sbjct: 546 RAARNSEGKVIMYGDKITDSMDRAIKETERRRSIQVAYNEEHGITPQTIRKKVRDVIEAT 605

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            + +     +  + Q+  +SKK+ +  ++ L  +M  AA NL FE AA +RD +  L+
Sbjct: 606 KVAEGKADYLVGEGQK--MSKKERQKLIQRLEAEMKEAAKNLQFERAAELRDALLELQ 661


>gi|122879246|ref|YP_201832.6| excinuclease ABC subunit B [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188577607|ref|YP_001914536.1| excinuclease ABC subunit B [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|238689561|sp|B2SUN1|UVRB_XANOP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|188522059|gb|ACD60004.1| excinuclease ABC, B subunit [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 673

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/669 (55%), Positives = 488/669 (72%), Gaps = 12/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L IG+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G + E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI+   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGTQVDDLMSEIHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDE+ RRREKQ+E+N +H I P+SV+  I ++++    ED
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDESDRRREKQVEYNLEHGITPESVERPISDIMEG-ARED 603

Query: 741 AATTNISID-----------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           AA                      ++   +    LKSL ++M+  A +L FE AA+IRD+
Sbjct: 604 AAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGKLKSLEQKMYQHAKDLEFEAAAQIRDQ 663

Query: 790 IKRLKSSPY 798
           I++LK++  
Sbjct: 664 IQKLKTASL 672


>gi|303238155|ref|ZP_07324691.1| excinuclease ABC, B subunit [Acetivibrio cellulolyticus CD2]
 gi|302594201|gb|EFL63913.1| excinuclease ABC, B subunit [Acetivibrio cellulolyticus CD2]
          Length = 660

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/662 (54%), Positives = 484/662 (73%), Gaps = 2/662 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P GDQP AI +L +GI+   K Q LLGVTGSGKTFTMA VIE +Q+P +
Sbjct: 1   MPEFKIASEYKPCGDQPKAIDKLCEGINRGLKGQTLLGVTGSGKTFTMANVIERVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAY+  TDTYIEK++SINE+ID+
Sbjct: 61  IIAHNKTLAAQLCSEFKEFFPDNIVEYFVSYYDYYQPEAYIATTDTYIEKDASINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G  E Y+ +++ L+ G   ++ E++  LV+ QY
Sbjct: 121 LRHSATAALFERRDVIIVASVSCIYGLGDPEDYTDLMLSLRKGMQKDRDEIIRKLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R +I   RG FR  GD +EIFPS+  D   RV  FG++I+ I+E   LTG+ + ++   
Sbjct: 181 ERNEIDFKRGKFRARGDVLEIFPSYSSDKVIRVEFFGDEIDRITEINYLTGEILGSMSHA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHY T R  +  AM  I++EL+ RL EL+++G+LLEAQRLEQR  YDLEML+  G
Sbjct: 241 AIFPASHYATTRSKMEKAMVNIEKELEERLKELKEDGKLLEAQRLEQRTRYDLEMLQEVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+++GR PG  P TL +Y P+D L+ +DESHVT+PQ+  MY GD  RK +L
Sbjct: 301 FCQGIENYSRHISGREPGSSPYTLIDYFPDDFLMMIDESHVTVPQVGAMYNGDRSRKQSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL+F E+       + VSATP ++E    Q  IVEQIIRPTGL+DP
Sbjct: 361 VDYGFRLPSAFDNRPLKFNEFEERINQIVFVSATPAAYERNNSQQ-IVEQIIRPTGLIDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++  + Q++D+  EIN   Q+  R+L+T LTK+M+EDLT+YL E + +V+Y+HS++ 
Sbjct: 420 EIIVKPVKGQIDDLIGEINERIQKNERVLVTTLTKKMSEDLTDYLKELDFKVKYLHSDIL 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  KVI+YADT+T+S++ AI ET RRR+ Q+E+N++H I PQS+K+ + +VI+   
Sbjct: 540 AARNVEGKVIMYADTVTESMRKAISETNRRRKLQVEYNEEHGIIPQSIKKSVRDVIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             + + +  S+  ++  +S+ + +A +  L K+M  AA +L FE AA +RD++  LKS  
Sbjct: 600 AAEES-SEYSVRREEEVISQGEAQAIIDRLTKEMKKAAADLQFERAAELRDKLNGLKSKF 658

Query: 798 YF 799
             
Sbjct: 659 GL 660


>gi|292493208|ref|YP_003528647.1| excinuclease ABC subunit B [Nitrosococcus halophilus Nc4]
 gi|291581803|gb|ADE16260.1| excinuclease ABC, B subunit [Nitrosococcus halophilus Nc4]
          Length = 681

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/662 (56%), Positives = 489/662 (73%), Gaps = 6/662 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +DY P+GDQP AI QL++G+ + E  Q LLGVTGSGKTFT+A VI+ +QRP I++AP
Sbjct: 6   ELVSDYQPAGDQPEAIGQLVEGLTAGEMYQTLLGVTGSGKTFTIANVIQQVQRPTIILAP 65

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK LAAQLYSE + FFPHNAV YFVSYYDYYQPEAY+P +DTYI K++S+N+ I++MR S
Sbjct: 66  NKTLAAQLYSEMREFFPHNAVGYFVSYYDYYQPEAYLPASDTYIGKDASVNDYIEQMRLS 125

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT++ LER D IVV+SVS IYG+G  +SY  M++ L +GD+V+Q+ +L  L + QY+R D
Sbjct: 126 ATKAFLERPDAIVVASVSSIYGLGDKDSYLNMVLHLMVGDTVDQRGILRRLAELQYQRND 185

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           + + RGT+RV GD I+I+P+  E  A RV +F ++IE +S F PLTG+ +  V  + IY 
Sbjct: 186 MELGRGTYRVRGDVIDIYPAESEQEAIRVELFDDEIEGLSYFDPLTGEILYRVPRLTIYP 245

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            +HYVTPR  L  A++ IK EL  RL +L +  +L+EAQRLEQR  +D+EM+   G C  
Sbjct: 246 KTHYVTPREILLQAVEDIKVELAERLEQLYRANKLVEAQRLEQRTRFDIEMILELGYCTG 305

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSR+L+ R PGE PPTLF+Y+PE++LL +DESHVT+PQ+  MYRGD  RK TL EYG
Sbjct: 306 IENYSRFLSRRQPGEAPPTLFDYLPENALLIIDESHVTVPQLGAMYRGDRARKETLVEYG 365

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPS +DNRPL+FEEW  L P  I VSATPG +E ++  G +VEQ++RPTGL+DP VE+
Sbjct: 366 FRLPSALDNRPLKFEEWERLAPQIIFVSATPGPYEQQRS-GAVVEQVVRPTGLIDPEVEV 424

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           RSA TQV+D+  EI        R+L+TVLTKRMAEDLT+YL +  +RVRY+HS++ T+ER
Sbjct: 425 RSASTQVDDLLSEIRQRVMAAERVLVTVLTKRMAEDLTQYLEQHEVRVRYLHSDIDTVER 484

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           +EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRAARN
Sbjct: 485 VEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAARN 544

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           ++ K ILY D  T S+  AI ET RRR+KQ+  N+ H I P+ V++ + E+ID +     
Sbjct: 545 LHGKAILYGDETTGSMSRAIAETERRRKKQIAFNQLHGITPRGVQKSVREIIDGVYTPGT 604

Query: 742 ATTN-----ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                        A+   L  ++    L+ L +QM+  A NL FEEAAR+RDEI+++K+ 
Sbjct: 605 GNARQYARIAEEAAEYTRLPPQQLAKRLQQLEQQMYKHAQNLEFEEAARLRDEIQKIKAR 664

Query: 797 PY 798
            +
Sbjct: 665 VF 666


>gi|313123323|ref|YP_004033582.1| excinuclease ABC subunit b [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279886|gb|ADQ60605.1| excinuclease ABC subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 680

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/665 (51%), Positives = 469/665 (70%), Gaps = 2/665 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +D   F++ + Y P+GDQ  AI QL  G  + +K Q+L G TG+GKT+TMA VI  M 
Sbjct: 3   KRQDNNKFELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAKMN 62

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P +V+  NK L  QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN+
Sbjct: 63  KPTLVITHNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASIND 122

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +ID++RH+AT +L+ RND IVV+SVSCIYG+G    Y+  ++ +  G   E+  LL  LV
Sbjct: 123 EIDQLRHAATSALMSRNDVIVVASVSCIYGLGDPREYAASVLNVYTGQEYERNTLLRDLV 182

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R DI   RG FRV GD +E+FP+   D A+R+  FG++I+ I E  PLTG+    
Sbjct: 183 NIQYDRNDIDFQRGRFRVRGDVVEVFPAGYSDRAYRIEFFGDEIDRIVEVDPLTGEVHGV 242

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            ++I ++  +H++T    L  A+  IK E+  ++ + EKEG+LLEA+R++QR TYDLEML
Sbjct: 243 RDSISLFPATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLEML 302

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
              G    IENYSR +  R  GEPP TL ++ P+DSL+ +DESH T+P+I  MY GD +R
Sbjct: 303 REVGYTNGIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDRNR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL +YGFRLPS +DNRPL+ EE+       + VSATPG +EL Q    IVEQ+IRPTG
Sbjct: 363 KQTLIDYGFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNQT-SRIVEQVIRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP +E+R    Q++D+  EINL  ++  R+ +T LTK+MAEDLT+YL +  I+VRY+H
Sbjct: 422 LLDPKIEVRPIEGQIDDLVAEINLRIERKERVFVTTLTKKMAEDLTDYLKDLGIKVRYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++KTLER++IIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   LIQ
Sbjct: 482 SDIKTLERMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLIQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N +VI+YAD IT S++LAIDET RRR  Q+++N++H I P+++ + + ++I
Sbjct: 542 TMGRAARNANGEVIMYADRITDSMKLAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDMI 601

Query: 734 DPILLEDAATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             +  +  A  + S  D     L+ K+ K  + +L +QM  AA  L+FE AA +RD I  
Sbjct: 602 SVVKADKEAEKSDSFADLNFDELTAKQKKQMIANLNEQMQDAAKRLDFESAANLRDAIIE 661

Query: 793 LKSSP 797
           L+ S 
Sbjct: 662 LEGSV 666


>gi|119713691|gb|ABL97741.1| excinuclease ABC B subunit [uncultured marine bacterium EB0_41B09]
          Length = 678

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/675 (54%), Positives = 483/675 (71%), Gaps = 4/675 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N +   + F +   + P+GDQP AI  L+ G+++ EK Q LLGVTGSGKTFT+A VI   
Sbjct: 2   NLTFPNSPFILNQPFKPAGDQPKAINSLVDGVNNNEKFQTLLGVTGSGKTFTIANVIAQT 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            +P+IVMAPNK LAAQLYSEF++FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSIN
Sbjct: 62  GKPSIVMAPNKTLAAQLYSEFRDFFPQNAVEYFVSYYDYYQPEAYVPGRDVFIEKDSSIN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + I++MR SAT+SLLER+D I+V++VS IYGIG    Y  M++ +++ + + Q+ ++  L
Sbjct: 122 DHIEQMRLSATKSLLERDDSIIVATVSAIYGIGDPVDYHGMVLHIQVDEKILQRNIILRL 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QY R D    RG FRV GD I+IFP+   + A R+++F + IE I+ F PLTGQ   
Sbjct: 182 VSMQYDRNDFDFSRGCFRVRGDVIDIFPAENSETAIRITLFDDVIESITAFDPLTGQLFD 241

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            ++   IY +SHYVTPR T   A++ IK+EL  R+ +   EG+LLEAQR+EQR  +DLEM
Sbjct: 242 KLKRFTIYPSSHYVTPRETTLKAIERIKKELVERVKQYTTEGKLLEAQRIEQRTKFDLEM 301

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G C+ IENYSR+L+GR  G+P PTL  Y+P ++L+ +DESHVT+PQI GM +GD  
Sbjct: 302 LNEIGFCKGIENYSRHLSGRKAGDPAPTLLNYLPNNALMIIDESHVTVPQIGGMSKGDRA 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L +YGFRLPS  DNRPL+F E+  + P  I VSATP  +E +    IIVEQ++RPT
Sbjct: 362 RKNNLVDYGFRLPSAHDNRPLKFNEFESIMPQCIFVSATPADYEEKHSP-IIVEQVVRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP +EI+ A +QV+DV  EI +  +   R+L+T LTKRMAEDLT+YL E +I+VRY+
Sbjct: 421 GLIDPKIEIKPADSQVDDVLSEIKIRVEANERVLITTLTKRMAEDLTDYLTEHSIKVRYL 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSE+ T+ER+EIIRDLRLGKFDV+VGINLLREGLDIPE  LVA+LDADKEGFLRS+ SLI
Sbjct: 481 HSEIDTVERVEIIRDLRLGKFDVVVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLI 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QT GRAARN+N KVI YA++IT+S+Q AIDET RRR+KQL+ NK +NI P  + +K+ ++
Sbjct: 541 QTAGRAARNLNGKVIFYANSITRSMQAAIDETGRRRKKQLKFNKDNNITPVGILKKVKDI 600

Query: 733 IDPILLEDAATTNISIDA---QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           I+ I  E+      +      +   L++ +    +  L K M  AA NL FE+AA  RD+
Sbjct: 601 IESIQDEEEFKKQKAQSKSNRKYEDLTEPQIIKEIGKLEKVMQSAARNLEFEKAANARDQ 660

Query: 790 IKRLKSSPYFQGLDD 804
           IK LK   Y   + D
Sbjct: 661 IKFLKEKIYGANIQD 675


>gi|152997223|ref|YP_001342058.1| excinuclease ABC subunit B [Marinomonas sp. MWYL1]
 gi|150838147|gb|ABR72123.1| excinuclease ABC, B subunit [Marinomonas sp. MWYL1]
          Length = 675

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/663 (55%), Positives = 485/663 (73%), Gaps = 10/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AI +L++G+ +    Q LLGVTGSGKT+T+A VI  ++RP IVMA
Sbjct: 5   FQVVSSYSPAGDQPKAIEKLVRGVEAGLAHQTLLGVTGSGKTYTIANVISQVKRPTIVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYV  +DT+IEK++S+NE I++MR 
Sbjct: 65  HNKTLAAQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVAASDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G  +SY +M++ L  GD ++Q+++L  L + QY R 
Sbjct: 125 SATKALLEREDVIIVATVSAIYGLGDPQSYLKMMLHLDRGDRIDQRDVLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD IE+FP+  ED A R+ +F +++E +S   PLT + IR V  + IY
Sbjct: 185 DLVLERGNFRVRGDVIEVFPADSEDTAIRIELFDDEVETLSMIDPLTNKTIRKVPRVTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTP+ T+  A++ IK EL  RL +L+   +L+E QRL+QR  YDLEM++  G C 
Sbjct: 245 PKTHYVTPKETVQAAIERIKVELDQRLEQLKSMNKLVEMQRLDQRTRYDLEMMQELGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G PPPTLF+Y+P ++LL +DESHVT+ QI  MY+GD  RK  L EY
Sbjct: 305 GIENYSRYLSGREEGSPPPTLFDYLPANALLVIDESHVTVSQIGAMYKGDRSRKENLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEEW  ++P TI VSATPG +E E  Q  +VEQI+RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMRFEEWEQIKPQTIFVSATPGKYEEEH-QDWVVEQIVRPTGLIDPILE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EINL    G R+L+T LTKRMAEDL++YL +  +RVRY+HS++ T+E
Sbjct: 424 VRPVATQVDDLLSEINLRTPIGERVLVTTLTKRMAEDLSDYLGDHGVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSEKSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILYAD IT S++ AI ET RRREKQ  +N++H I P  + + + ++++      
Sbjct: 544 NVNGKAILYADRITGSMERAISETDRRREKQKAYNEEHGITPVGITKSVEDIMEGAYNPG 603

Query: 741 AAT--------TNISIDAQQLSLSK-KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           A             + D Q  S+    + +  +  L+K+M LA++ L FE AA  RD+I+
Sbjct: 604 AGKRSNKTKKVAETAKDYQVESMEDVAQVRKAMIQLQKEMMLASEELKFELAAGYRDQIR 663

Query: 792 RLK 794
           +L+
Sbjct: 664 QLQ 666


>gi|226939888|ref|YP_002794961.1| excinuclease ABC subunit B [Laribacter hongkongensis HLHK9]
 gi|226714814|gb|ACO73952.1| UvrABC system protein B [Laribacter hongkongensis HLHK9]
          Length = 669

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/662 (54%), Positives = 471/662 (71%), Gaps = 4/662 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + +++   + P+GDQP AIA L++G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 10  SPYRLHQPFPPAGDQPTAIAGLVEGLSDGLAFQTLLGVTGSGKTYTMANVIARTGRPAII 69

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 70  MAPNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 129

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER DCI+V++VS IYGIG    Y QMI+ LK GD   Q++++  L   QY 
Sbjct: 130 RLSATKAILERPDCIIVATVSAIYGIGDPSDYHQMILHLKEGDKTAQRDIIKRLTVMQYD 189

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R ++   RGTFRV GD I+IFP+   ++A R+S+F +++E +  F PLTG+    V    
Sbjct: 190 RAELDFKRGTFRVRGDVIDIFPAESAELALRISLFDDEVETLHLFDPLTGRTDHRVGRFT 249

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL  R +  +  G+L+EAQR+EQR  +DLEML   G 
Sbjct: 250 VFPSSHYVTPRATVLRACEAIKEELAARRMSFDLAGKLVEAQRIEQRTRFDLEMLYEMGF 309

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+ PGE PPTL +Y+P+ +L+ +DESHVT+PQI GMY+GD  RK  L 
Sbjct: 310 CKGIENYSRHFSGKQPGEAPPTLIDYLPKSTLMIIDESHVTVPQIGGMYKGDRARKENLV 369

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  + P T+ VSATPG +E     G +VEQ++RPTGLVDP 
Sbjct: 370 EYGFRLPSALDNRPLKFEEFERMMPQTVFVSATPGPYEASHA-GQVVEQVVRPTGLVDPQ 428

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R   TQV+D+  EI   A    R+L+T LTKRMAE LT+Y  E  IRVRY+HS++ T
Sbjct: 429 ISVRPVTTQVDDLMSEITARAASNERVLVTTLTKRMAEQLTDYYTEHGIRVRYLHSDIDT 488

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 489 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 548

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N   ILYAD IT S++ AI ET RRR+KQ   N+ + I P+ V++KI ++ID +  
Sbjct: 549 ARNLNGLAILYADKITPSMERAIGETERRRQKQQAFNEANGIVPRGVQKKIKDIIDGVYH 608

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           E+                 K+    +K   KQM  AA +L FEEAAR+RD++++L+   +
Sbjct: 609 EETGAPAPKAGKLH---DPKQLARLIKDTEKQMLDAARDLRFEEAARLRDQLRQLRDQLF 665

Query: 799 FQ 800
             
Sbjct: 666 VD 667


>gi|240013900|ref|ZP_04720813.1| excinuclease ABC subunit B [Neisseria gonorrhoeae DGI18]
 gi|240121469|ref|ZP_04734431.1| excinuclease ABC subunit B [Neisseria gonorrhoeae PID24-1]
 gi|293398869|ref|ZP_06643034.1| excinuclease ABC, B subunit [Neisseria gonorrhoeae F62]
 gi|291610283|gb|EFF39393.1| excinuclease ABC, B subunit [Neisseria gonorrhoeae F62]
          Length = 675

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/665 (53%), Positives = 480/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA L++G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLIEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
             IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 TIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ A+DET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDSGKGRRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRNIK 667

Query: 795 SSPYF 799
            +  F
Sbjct: 668 ENLLF 672


>gi|331082518|ref|ZP_08331643.1| UvrABC system protein B [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400496|gb|EGG80126.1| UvrABC system protein B [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 662

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/660 (53%), Positives = 470/660 (71%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F+++  Y P+GDQP AIA+L+KG     + Q LLGVTGSGKTFTMA VI+ +Q+P +
Sbjct: 1   MNEFKLKAPYKPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAYVP +DTYI K+SS+N++ID+
Sbjct: 61  VIAHNKTLAAQLYGEFKEMFPDNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSVNDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SL ER D I+VSSVSCIYGIGS + Y  MI+ L+ G   ++ E++  L+  QY
Sbjct: 121 LRLSATSSLSERKDVIIVSSVSCIYGIGSPDDYQNMIISLRPGMEKDRDEVVRELIDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RGTFRV GD +EIFP+   + A RV  FG++I+ I+E   LTG+    +  I
Sbjct: 181 DRNEMDFHRGTFRVRGDVLEIFPADYSETAVRVEFFGDEIDRITEVDILTGEIKSALNHI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV P   +  A   I+EELK R+   + E +LLEAQR+ +R  +D+EML+ TG
Sbjct: 241 AIFPASHYVVPIEKIRKAAVAIEEELKERVDYFKGEDKLLEAQRISERTNFDIEMLKETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L+G  PG+PP TL +Y  +D L+ +DESH TIPQI GMY GD  RK TL
Sbjct: 301 FCSGVENYSRHLSGLKPGQPPYTLIDYFGDDFLIIIDESHKTIPQIRGMYAGDQSRKQTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL FEE+       + VSATPG +E E  + +  +QIIRPTGL+DP
Sbjct: 361 VDYGFRLPSAKDNRPLNFEEFEDKIDQILFVSATPGEYE-ENHELLRADQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++D+  E+N   ++  +IL+T LTKRMAEDLTEY+ E  IRVRY+HS++ 
Sbjct: 420 EVEVRPVEGQIDDLISEVNKEIKKKNKILITTLTKRMAEDLTEYMKELGIRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER +IIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TLERTQIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSEVSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN + +VI+YAD IT S+++AIDET RRR  Q ++N++H I P+++K+ + ++I    
Sbjct: 540 AARNADGRVIMYADVITDSMRIAIDETMRRRALQQKYNEEHGITPKTIKKAVRDLISISK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                   +  D +  S+S+K+ +  +K ++KQM  AA +LNFE AA +RD++  LK + 
Sbjct: 600 AVAETEEKLEKDPE--SMSRKELENLIKKVQKQMQAAAADLNFEMAASLRDKMLELKKNL 657


>gi|296184678|ref|ZP_06853089.1| excinuclease ABC subunit B [Clostridium carboxidivorans P7]
 gi|296050460|gb|EFG89883.1| excinuclease ABC subunit B [Clostridium carboxidivorans P7]
          Length = 661

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/651 (53%), Positives = 468/651 (71%), Gaps = 2/651 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + P+GDQP AI  ++K I+ +EK Q LLGVTGSGKTFTMA +IE +++P +
Sbjct: 1   MKEFKIHSKFKPTGDQPQAIDSIVKSINDKEKFQTLLGVTGSGKTFTMANIIERVKKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF+ FFP N VEYFVSYYDYYQPEAYV +TDTYIEK++SIN++ID+
Sbjct: 61  VLAHNKTLAAQLCSEFREFFPENCVEYFVSYYDYYQPEAYVAQTDTYIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +LLER D +VV+SVSCIYG+G+ E Y ++ + L+ G + ++ E+L  LV+ QY
Sbjct: 121 LRHSATSALLERTDVVVVASVSCIYGLGNPEEYKKLTLSLREGMTKDRDEVLKKLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R +I  +RGTFRV GD ++IFP+     A R+  FG++I+ I EF  LTG+ I   + +
Sbjct: 181 ERNEINFVRGTFRVKGDVLDIFPASSSGKAIRIEFFGDEIDRIKEFDALTGETIGTRKHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+ T R  L  A+K I+ EL+ R+ EL  + +LLEAQRL+QR  +D+EM+   G
Sbjct: 241 SIFPASHFATSRERLEIAIKSIESELEERVRELTSQDKLLEAQRLKQRTNFDIEMMREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L GR  G PP TL +Y PED LLF+DESHVTIPQ+  MY GD  RK +L
Sbjct: 301 YCSGIENYSRILDGRAKGTPPQTLIDYFPEDYLLFIDESHVTIPQVKAMYAGDRSRKESL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL F E+       + VSATP ++ELE     + EQIIRPTGL+DP
Sbjct: 361 VEYGFRLPSAFDNRPLTFNEFEGKLNQVLFVSATPANYELEHSTN-VAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E++  + Q++D+Y  I    ++G RIL+T LTK+MAEDL++Y  E +I+  Y+HS + 
Sbjct: 420 EIEVKPIKGQIDDLYKNIVETIKRGYRILVTTLTKKMAEDLSDYFKEMDIKANYLHSGID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T++R+EIIRDLR G+FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TIQRMEIIRDLRKGEFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+YAD IT S+  AI ET RRR+ Q+E+N+KHNI P+++K++I EVI+   
Sbjct: 540 AARNSESKVIMYADRITDSMGKAISETNRRRKIQMEYNEKHNIVPKTIKKEIREVIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           + +      S++ + +  + +     +    K+M  AA  L FE AA +RD
Sbjct: 600 VLEENAQYDSLE-EAMEANNENIDLLISKYEKEMKQAAKELQFELAADLRD 649


>gi|258653200|ref|YP_003202356.1| excinuclease ABC subunit B [Nakamurella multipartita DSM 44233]
 gi|258556425|gb|ACV79367.1| excinuclease ABC, B subunit [Nakamurella multipartita DSM 44233]
          Length = 739

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/712 (50%), Positives = 479/712 (67%), Gaps = 34/712 (4%)

Query: 116 LLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
                 I        + +  +    F++ +DY PSGDQP AIA+L K + + EK  +LLG
Sbjct: 3   FATEHPILAVSEHRPVGDIPRTSGRFEVVSDYQPSGDQPQAIAELRKRLDAGEKDVVLLG 62

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GK+ T A +IE +QRP +VMAPNK LAAQL +E +  FP NAVEYFVSYYDYYQPE
Sbjct: 63  ATGTGKSATTAWLIEQVQRPTLVMAPNKTLAAQLANELRELFPENAVEYFVSYYDYYQPE 122

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AYVP+TDTYIEK+SSIN  ++R+RHSAT SLL R D IVV+SVSCIYG+G+ +SY    +
Sbjct: 123 AYVPQTDTYIEKDSSINNDVERLRHSATMSLLSRRDVIVVASVSCIYGLGTPQSYLDRSL 182

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            + IG  +E+  LL +LV+ QY R D+   RG+FRV GD++EI P++ E++A R+  FG+
Sbjct: 183 PVAIGQQIERDALLRALVEIQYSRNDVSFTRGSFRVRGDTVEIIPAY-EELAVRIEFFGD 241

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           ++E +   +PLTG  +R V++++I+  +HYV     +  A+  I+ EL  RL ELEK+G+
Sbjct: 242 EVERLYYLHPLTGDVVREVDSLRIFPATHYVAGPERMAKAIAAIETELAQRLAELEKQGK 301

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRL  R +YD+EM+   G C  IENYSR++ GR  G  P TL +Y P+D LL +DE
Sbjct: 302 LLEAQRLRMRTSYDVEMMRQVGFCSGIENYSRHIDGRPGGSAPATLIDYFPDDFLLVIDE 361

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVT+PQI  MY GD  RK  L ++GFRLPS MDNRPL +EE+      T+ +SATPG +
Sbjct: 362 SHVTVPQIGAMYEGDASRKRVLVDHGFRLPSAMDNRPLTWEEFAGRIGQTVYLSATPGPY 421

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           EL Q QG  VEQ+IRPTGLVDP V I+  R Q++D+  EI     +  R+L+T LTK+M+
Sbjct: 422 ELGQAQGEFVEQVIRPTGLVDPEVVIKPTRGQIDDLIGEIRARTIRDERVLVTTLTKKMS 481

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL E  IRVRY+HSEV TL R+E++R+LRLG+FDVLVGINLLREGLD+PE  LVA
Sbjct: 482 EDLTDYLLELGIRVRYLHSEVDTLRRVELLRELRLGEFDVLVGINLLREGLDLPEVSLVA 541

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS+TSLIQTIGRAARNVN +V +YAD IT S++ AIDET RRREKQ E+N
Sbjct: 542 ILDADKEGFLRSETSLIQTIGRAARNVNGEVHMYADKITPSMERAIDETNRRREKQQEYN 601

Query: 716 KKHNINPQSVKEKIMEVIDPILLE---------------------------------DAA 742
           + H I+P  +++KI +++  +  E                                  + 
Sbjct: 602 RAHGIDPMPLRKKINDILALVYAEADNTVDGGSPVKVGGSGRNSSRGRKAQGEPGGKASK 661

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           T+ +        +++ +    ++ L  QM  AA +L FE A R+RDEI  LK
Sbjct: 662 TSGVFAGHNTAGMARSELADLVQQLTDQMMAAARDLKFELAGRLRDEISELK 713


>gi|304407653|ref|ZP_07389304.1| excinuclease ABC, B subunit [Paenibacillus curdlanolyticus YK9]
 gi|304343136|gb|EFM08979.1| excinuclease ABC, B subunit [Paenibacillus curdlanolyticus YK9]
          Length = 667

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/666 (53%), Positives = 465/666 (69%), Gaps = 1/666 (0%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + +  +    F++ +DY P GDQP AI +L++GI +  + Q LLG TG+GKT+T+A  I 
Sbjct: 1   MADKERPEQTFKLLSDYKPQGDQPGAIRELVEGIDNGLRYQTLLGATGTGKTYTIANTIA 60

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            + RP +V+A NK LAAQL SEF+ FFP NAV YFVSYYDY+QPEAY+P TDTYIEK+SS
Sbjct: 61  KLNRPTLVIAHNKTLAAQLCSEFQEFFPENAVSYFVSYYDYFQPEAYIPSTDTYIEKDSS 120

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN++ID++RHSAT SL ER D IVV+SVSCIYG+GS   Y  +++ L++G    +  +L 
Sbjct: 121 INDEIDKLRHSATSSLFERRDVIVVASVSCIYGLGSPTEYGSLVLSLRVGMEKPRDAILH 180

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV  QY+R DI  IRGTFRV GD IEIFP    + A RV +FG++IE I+E   LTG+ 
Sbjct: 181 KLVDIQYQRNDINFIRGTFRVRGDIIEIFPVANNERAIRVELFGDEIERITEIDVLTGEI 240

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +   + I I+  SH+VT   T+  A+  I+ EL+ RL EL  + +LLEAQRLEQR  YD+
Sbjct: 241 LGERDHIAIFPASHFVTQEETMKRALVNIERELEERLAELRGQNKLLEAQRLEQRTRYDI 300

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM++  G C  IENYS  LT R  G  P TL +Y P+D L+ +DESHVT+PQI  MY GD
Sbjct: 301 EMMQEMGFCSGIENYSGPLTFRERGATPYTLMDYFPDDMLIVIDESHVTLPQIRAMYNGD 360

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK  L E+GFRLPS MDNRPLRFEE+       I VSATPG +ELE C   +VEQIIR
Sbjct: 361 RARKEVLVEHGFRLPSAMDNRPLRFEEFEEKAGQMIYVSATPGPYELEHCP-TMVEQIIR 419

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP +E+R  + Q++D+  EI     +  R+L+T LTK+MAEDLT+YL +  I+VR
Sbjct: 420 PTGLVDPIIEVRPTKGQIDDMLGEIRARIAKDERVLVTTLTKKMAEDLTDYLKDVGIKVR 479

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           YMHS++KTLER++I+RDLRLG F VLVGINLLREGLD+PE  LV ILDADKEGFLRS+ S
Sbjct: 480 YMHSDIKTLERMQILRDLRLGTFHVLVGINLLREGLDLPEVTLVTILDADKEGFLRSERS 539

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARN   +VI+Y D IT S+  AI ET RRR  QL +N+KH I PQ++++KI 
Sbjct: 540 LIQTIGRAARNSEGRVIMYGDKITDSMDKAIKETERRRSIQLAYNEKHGITPQTIRKKIH 599

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            VI+   + +     ++       +SKK  ++ ++ L  +M  AA NL FE AA +RD +
Sbjct: 600 SVIEATKVAEQKADYLTGVNAGGKMSKKDRQSVIQRLEAEMKDAAKNLQFERAAELRDAL 659

Query: 791 KRLKSS 796
             L++ 
Sbjct: 660 LELRAE 665


>gi|299769171|ref|YP_003731197.1| excinuclease ABC subunit B [Acinetobacter sp. DR1]
 gi|298699259|gb|ADI89824.1| excinuclease ABC subunit B [Acinetobacter sp. DR1]
          Length = 673

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/668 (55%), Positives = 477/668 (71%), Gaps = 10/668 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + T Y P+GDQP AI +L+ GI    + QLLLGVTGSGKT+TMA VI   QRP IVM
Sbjct: 6   PFDLVTHYQPAGDQPQAIEKLVNGIEHGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVM 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+++IN+ ID+MR
Sbjct: 66  AHNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V + E++  LV+ QY R
Sbjct: 126 LSATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVEGDRVSRDEIIRRLVEMQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++  +RGT+R+ G+ I+IFP+  +  A R+ +F ++++ I  F PLTG+ +R V  + I
Sbjct: 186 NELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKVSRVTI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  SHYVTP+  L  A+  IK+EL+ +L    +  +LLEAQR+EQR  YDLEM++  G  
Sbjct: 246 YPKSHYVTPKDHLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYT 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+GR  GE PPTLF+YIPED+LL +DESHVT+PQI  MY+GD  RK  L  
Sbjct: 306 NGIENYSRHLSGRPSGEAPPTLFDYIPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVN 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP++FEEW  + PTTI VSATP  +ELE+    IVEQ++RPTGL+DP +
Sbjct: 366 YGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAKYELEKSDQ-IVEQVVRPTGLIDPEI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR   TQV+DV  EIN+      R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T+
Sbjct: 425 EIRPVLTQVDDVLSEINIRKSLNERVLITTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++II +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  K ILYAD IT S+Q AIDET RRR KQ+E N+ H I P+S   + ++ ID   + 
Sbjct: 545 RNVKGKAILYADRITDSMQKAIDETDRRRAKQIEFNELHGITPRSAVRQAVKEIDSGEVL 604

Query: 740 DAATTNISIDAQQLSLSKKKG---------KAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                +  +  Q  +LS  +            H+  L K M  A+ +L FE+AARIRDEI
Sbjct: 605 SDDEIDEKVLEQAQALSADERHILSDPKLFTKHITKLEKDMLKASKDLQFEQAARIRDEI 664

Query: 791 KRLKSSPY 798
            RLK+   
Sbjct: 665 LRLKAQML 672


>gi|325684482|gb|EGD26646.1| excision endonuclease subunit UvrB [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 680

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/665 (51%), Positives = 470/665 (70%), Gaps = 2/665 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +D   F++ + Y P+GDQ  AI QL  G  + +K Q+L G TG+GKT+TMA VI  M 
Sbjct: 3   KRQDNNKFELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAKMN 62

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P +V+  NK L  QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN+
Sbjct: 63  KPTLVITHNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASIND 122

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +ID++RH+AT +L+ RND IVV+SVSCIYG+G    Y+  ++ +  G   E+  L+  LV
Sbjct: 123 EIDQLRHAATSALMSRNDVIVVASVSCIYGLGDPREYAASVLNVYTGQEYERNTLIRDLV 182

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R DI   RG FRV GD +E+FP+   D A+R+  FG++I+ I E  PLTG+    
Sbjct: 183 NIQYDRNDIDFQRGRFRVRGDVVEVFPAGYSDRAYRIEFFGDEIDRIVEVDPLTGEVHGV 242

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            ++I ++  +H++T    L  A+  IK E+  ++ + EKEG+LLEA+R++QR TYDLEML
Sbjct: 243 RDSISLFPATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLEML 302

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
              G    IENYSR +  R  GEPP TL ++ P+DSL+ +DESH T+P+I  MY GD +R
Sbjct: 303 REVGYTNGIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDRNR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL +YGFRLPS +DNRPL+ EE+       + VSATPG +EL Q    IVEQ+IRPTG
Sbjct: 363 KQTLIDYGFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNQT-SRIVEQVIRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP +E+R    Q++D+  EINL  ++  R+ +T LTK+MAEDLT+YL +  I+VRY+H
Sbjct: 422 LLDPKIEVRPIEGQIDDLVAEINLRIERKERVFVTTLTKKMAEDLTDYLKDLGIKVRYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++KTLER++IIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   LIQ
Sbjct: 482 SDIKTLERMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLIQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N +VI+YAD IT S++LAIDET RRR  Q+++N++H I P+++ + + ++I
Sbjct: 542 TMGRAARNANGEVIMYADRITDSMKLAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDMI 601

Query: 734 DPILLEDAATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             +  +  A  + S  D     L+ K+ K  + +L++QM  AA  L+FE AA +RD I  
Sbjct: 602 SVVKADKEAEKSDSFADLNFDELTAKQKKQMIANLKEQMQDAAKRLDFESAANLRDAIIE 661

Query: 793 LKSSP 797
           L+ S 
Sbjct: 662 LEGSV 666


>gi|315444476|ref|YP_004077355.1| excinuclease ABC subunit B [Mycobacterium sp. Spyr1]
 gi|315262779|gb|ADT99520.1| Excinuclease ABC subunit B [Mycobacterium sp. Spyr1]
          Length = 719

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/704 (51%), Positives = 484/704 (68%), Gaps = 30/704 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             +++  +    F++ ++Y P+GDQPAAI +L + I + EK  +LLG TG+GK+ T A +
Sbjct: 16  RPVDDVVRSGARFEVVSEYEPAGDQPAAIKELERRIRAGEKDVVLLGATGTGKSATTAWL 75

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+
Sbjct: 76  IERLQRPTLVMAPNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKD 135

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN+ ++R+RHSAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+GD V +  L
Sbjct: 136 SSINDDVERLRHSATSNLLSRRDVVVVASVSCIYGLGTPQSYMDRSVELKVGDEVPRDSL 195

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R D+   RGTFRV GD++EI PS+ E++A R+  FG++IEE+   +PLTG
Sbjct: 196 LRLLVDVQYTRNDMSFTRGTFRVRGDTVEIIPSY-EELAVRIEFFGDEIEELYYLHPLTG 254

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             IR V++++I+  +HYV     +  A+  I+ EL+ RL ELE +G+LLEAQRL  R  Y
Sbjct: 255 DIIRKVDSLRIFPATHYVAGTERMAAAISTIEAELEARLAELEGQGKLLEAQRLRMRTNY 314

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G C  IENYSR++ GR  G  P TL +Y PED LL +DESHVT+PQI GMY 
Sbjct: 315 DIEMMRQVGFCSGIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYE 374

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L ++GFRLPS +DNRPL +EE+      T+ +SATPG++EL Q  G  VEQ+
Sbjct: 375 GDMSRKRNLVDFGFRLPSAVDNRPLTWEEFADRIGQTVYLSATPGNFELAQTGGEFVEQV 434

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++  + Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 435 IRPTGLVDPQVIVKPTKGQIDDLIGEIRKRTERDERVLVTTLTKKMAEDLTDYLLEMGIR 494

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSEV TL R+E++R LRLG++DVL+GINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 495 VRYLHSEVDTLRRVELLRQLRLGEYDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSP 554

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +V +YAD IT S++ AIDET RRR KQ+ +N +  I+PQ +++K
Sbjct: 555 RSLIQTIGRAARNVSGEVHMYADKITDSMKQAIDETERRRAKQIAYNTERGIDPQPLRKK 614

Query: 729 IMEVIDPILLEDAATTNISIDA---------------------------QQLSLSKKKGK 761
           I +++D +  E   T  + I                                ++ + +  
Sbjct: 615 IADILDQVYREADDTEAVEIGGSGRNASRGRRAPGEPGRAVSAGVYEGRDTKNMPRAELA 674

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             +K L  QM  AA +L FE AARIRDEI+ LK     +G+D +
Sbjct: 675 DLIKDLTAQMMAAARDLQFELAARIRDEIQDLKKE--LRGMDAA 716


>gi|199597263|ref|ZP_03210694.1| excinuclease ABC subunit B [Lactobacillus rhamnosus HN001]
 gi|199591779|gb|EDY99854.1| excinuclease ABC subunit B [Lactobacillus rhamnosus HN001]
          Length = 671

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/659 (52%), Positives = 460/659 (69%), Gaps = 4/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AIA+L KG    +K Q+LLG TG+GKTFTM+ +I  + +P ++++
Sbjct: 10  FDLVSPYKPAGDQPQAIAKLTKGFEEGKKAQILLGATGTGKTFTMSNIIANLNKPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVS I+G+G    Y   ++ L+ G ++++  LL  LV  Q+ R 
Sbjct: 130 SATSALLERNDVIVVASVSSIFGLGDPHEYKNHVLSLRTGMTIDRNTLLRQLVDIQFDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  +D A RV  FG++I+ I+E   LTG+ I   + + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDDHAIRVEFFGDEIDRITEVDALTGEVIGTRDHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I  EL+ RL  L  E +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFMTSDEQMERAIKSISAELEDRLKVLRGENKLLEAQRLEQRTNYDIEMMREMGFTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGEPP TL ++ P+D  + VDESHVT+PQ+ GMY GD  RK  L  Y
Sbjct: 310 GIENYSRHMDGRKPGEPPYTLLDFFPKDFTIMVDESHVTMPQVKGMYNGDRARKQMLINY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+ +E+       + VSATPG +EL +  +  I EQIIRPTGL+DP +
Sbjct: 370 GFRLPSALDNRPLKIDEFEKHVKRILYVSATPGPYELSRVPKEDIAEQIIRPTGLLDPKI 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  E+N       R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTL
Sbjct: 430 EVRPVMGQIDDLVGEVNKRIDAHERVFITTLTKKMAEDLTDYLKDMGIKVRYLHSDIKTL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +IIRDLRLGKFDVL+GINLLREG+D+PE  L+AILDADKEGFLR++ SLIQTIGRA+
Sbjct: 490 ERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRAERSLIQTIGRAS 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736
           RN + KVI+YAD +T S++ AIDET RRR  Q + N++H+I P+++ + I   I   +  
Sbjct: 550 RNEHGKVIMYADKVTDSMKAAIDETRRRRAIQEKFNEEHHIQPKTIIKPIRAAISTYEQS 609

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             E A       +     +SK   K  + +LR QM  AA  L+FE+AA +RD I  L++
Sbjct: 610 DDEKADAKKTFAEVDYEDMSKADKKELVANLRSQMQAAAKKLDFEQAASLRDTILELQA 668


>gi|59801006|ref|YP_207718.1| excinuclease ABC subunit B [Neisseria gonorrhoeae FA 1090]
 gi|75507400|sp|Q5F931|UVRB_NEIG1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|59717901|gb|AAW89306.1| excinuclease ABC subunit B [Neisseria gonorrhoeae FA 1090]
          Length = 675

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/665 (53%), Positives = 479/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA L++G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLIEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
             IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 TIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ A+DET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I  +K
Sbjct: 608 EEDSGKGRRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRISNIK 667

Query: 795 SSPYF 799
            +  F
Sbjct: 668 ENLLF 672


>gi|253996555|ref|YP_003048619.1| excinuclease ABC subunit B [Methylotenera mobilis JLW8]
 gi|253983234|gb|ACT48092.1| excinuclease ABC, B subunit [Methylotenera mobilis JLW8]
          Length = 677

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/669 (54%), Positives = 478/669 (71%), Gaps = 4/669 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + +Q+   + P+GDQP AI +L +G++   K Q LLGVTGSGKTFTMA VI    +PAIV
Sbjct: 8   SKYQLHQPFPPAGDQPQAIEKLTQGVNDGLKFQTLLGVTGSGKTFTMANVIARTGKPAIV 67

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLYSEF+ FFP+N+VEYFVSYYDYYQPEAYVP  D +IEK+SSIN+ I++M
Sbjct: 68  MAPNKTLAAQLYSEFREFFPNNSVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINDHIEQM 127

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER DC+VV++VS IYGIG    Y  M++ + +G  + Q++++  L++ QY 
Sbjct: 128 RLSATKAMLEREDCVVVATVSAIYGIGDPSEYHGMVLHIHLGQKIGQRDIVDHLIRMQYD 187

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RG FRV GD I++FPS   + A R+S+F ++I+ I  F PLTGQ    +   +
Sbjct: 188 RNDFDFDRGAFRVRGDVIDVFPSENSETAVRISLFDDEIDGIQLFDPLTGQIFNKIHNFR 247

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+ +SHYVT R     AM+ IKEEL+ R+    KE +L+EAQR+EQR  +DLEML   G 
Sbjct: 248 IFPSSHYVTAREATIRAMETIKEELRDRVNFYIKENKLVEAQRVEQRTRFDLEMLNEIGF 307

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+LTG  PG+PPPTL +Y+P+ +LL +DESHVT+PQI  MY+GD  RK  L 
Sbjct: 308 CKGIENYSRHLTGAKPGDPPPTLMDYLPDSALLIIDESHVTVPQIGAMYKGDRARKENLV 367

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS MDNRPL+FEE+  +    + VSATP  +E E  Q  +VE I RPTGL+DP 
Sbjct: 368 DYGFRLPSAMDNRPLKFEEFERVMRQCVFVSATPADYEKEH-QQQVVEMIARPTGLMDPE 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + ++ A TQV+D+  EI    + G R+L T LTKRM+EDLT+YL E  ++ RY+HS++ T
Sbjct: 427 IIVKPADTQVDDLLSEIKKRVELGERVLATTLTKRMSEDLTDYLSEHGVKTRYLHSDIDT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQT GRA
Sbjct: 487 VERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTAGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N +VI YA+ IT+S+QLA+DET RRR  Q   N+ H I P+ V ++I ++ID +  
Sbjct: 547 ARNLNGQVIFYANRITRSMQLAMDETERRRGVQKAFNEAHGITPRGVSKRIKDIIDGVYD 606

Query: 739 EDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +D A          A   +LS+K+    +K L K MH AA NL FE+AA  RD++K+L+ 
Sbjct: 607 KDEAVRERKAMQDQASYEALSEKQITKEMKRLEKAMHDAAKNLEFEKAADFRDQLKKLRV 666

Query: 796 SPYFQGLDD 804
             Y   + D
Sbjct: 667 KFYGAEMPD 675


>gi|149911642|ref|ZP_01900252.1| Putative excinuclease ABC subunit B [Moritella sp. PE36]
 gi|149805266|gb|EDM65281.1| Putative excinuclease ABC subunit B [Moritella sp. PE36]
          Length = 664

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/660 (52%), Positives = 475/660 (71%), Gaps = 1/660 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + ++Y PSGDQP AI +L+   ++    Q LLGVTGSGKT+T+A +I  + RP ++M
Sbjct: 4   LFDLCSEYTPSGDQPQAIEKLVDSFNAGVACQTLLGVTGSGKTYTVANMIAQLNRPTLLM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY+E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++++N  I++MR
Sbjct: 64  APNKTLAAQLYAEMKGFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDAAVNAHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++LLER D I+++SVS IYG+G  +SY +M++ + +G+ + Q+ ++  L + QY R
Sbjct: 124 LSATKALLERRDVILIASVSAIYGLGDPKSYLKMMLHVSVGEVISQRSIIRRLAELQYIR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+   R TFRV G+ I+I+P+  +  A R+ MF ++IE IS F PLTG   + VE   I
Sbjct: 184 NDMDFKRSTFRVRGEVIDIYPAESDKHAVRIEMFDDEIERISYFDPLTGAVEKTVERATI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  + +A+++IK EL  R  +L    +L+E QR+ QR+ +D+EM++  G C
Sbjct: 244 YPKTHYVTPREKILSAIEHIKVELSERKKQLLSANKLIEEQRVSQRVQFDIEMMQELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR PG+ PPTL +Y+P+D +L +DESHVT+PQI  MY+GD  RK TL E
Sbjct: 304 SGIENYSRYLSGRVPGDAPPTLLDYLPDDGILVIDESHVTVPQIGAMYKGDRSRKETLVE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+  + P T+ VSATP  +EL++C+G IV+Q++RPTGL+DP +
Sbjct: 364 FGFRLPSALDNRPLKFEEFESISPQTLYVSATPSQYELDRCEGEIVQQLVRPTGLLDPII 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+D+  EIN+   +G R+L T LTKRM+EDL EYL +  ++VRY+HS++ T+
Sbjct: 424 EVRPVDTQVDDLLSEINIRVAKGERVLATTLTKRMSEDLAEYLADHGVKVRYLHSDIDTV 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 484 ERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+  K ILYA+ ITK++  AI ET RRR  Q EHN KH I P+ +K+K+ + ++     
Sbjct: 544 RNLEGKAILYANRITKAMDKAISETDRRRALQHEHNVKHGITPKGLKKKVGDALNIGRTP 603

Query: 740 DAATTNISIDAQQLSL-SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           +     I+      ++ +       +  L +QM+  A +L FE+A   RD++ +L+    
Sbjct: 604 EQQMMFIAEQKATYAMFTPAALSKEIVRLEEQMYKYAQDLEFEKAGETRDKVAKLREQLI 663


>gi|51891289|ref|YP_073980.1| excinuclease ABC subunit B [Symbiobacterium thermophilum IAM 14863]
 gi|81826261|sp|Q67T57|UVRB_SYMTH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|51854978|dbj|BAD39136.1| excinuclease ABC subunit B [Symbiobacterium thermophilum IAM 14863]
          Length = 659

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/660 (55%), Positives = 472/660 (71%), Gaps = 6/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++   + P+GDQP AI +L +G+    + Q+LLG TG+GKTFT+AKVIE +Q+P +
Sbjct: 1   MKPFKVVAPFEPTGDQPQAIERLSEGVRRGAREQILLGATGTGKTFTIAKVIEQVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NKILAAQL SEF+ FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK++ IN++ID+
Sbjct: 61  VLAHNKILAAQLCSEFQQFFPENAVEYFVSYYDYYQPEAYIPTTDTYIEKDALINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+GS E Y  + V L++G+ V++  +L  LV  QY
Sbjct: 121 LRHSATMALFERRDVIIVASVSCIYGLGSPEDYRDLAVSLRVGNQVDRDYILRRLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D   +R  FRV GD +EIFP+   D A R   +G++IE ISEF PLTG+    +  +
Sbjct: 181 ERNDHNFVRNKFRVRGDVVEIFPAGATDRAIRCEWWGDEIERISEFDPLTGEITGTMTHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SHYV        A++ I+EEL+ RL EL  +G+LLEAQRLEQR   DLEM+   G
Sbjct: 241 AIYPASHYVVADEKREQALRSIEEELEERLKELRAQGKLLEAQRLEQRTRNDLEMIREIG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTGR PGEPP TL ++ P+D LL +DESHVTIPQ++ MY GD  RK TL
Sbjct: 301 FCSGIENYSRHLTGRKPGEPPYTLLDFFPDDWLLVIDESHVTIPQVAAMYNGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVD 556
            EYGFRLPS  DNRPL+F E+       I VSATPG +ELE+    ++VEQI+RPTGL+D
Sbjct: 361 IEYGFRLPSAADNRPLKFAEFEERINQVIYVSATPGPYELERVPPSLVVEQIVRPTGLLD 420

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P VE+R  + Q++D+Y EI    ++  R+L+T LTKRMAEDLTEYL E  ++VRYMHS+V
Sbjct: 421 PEVEVRPTKGQIDDLYAEIRARVKKNQRVLVTTLTKRMAEDLTEYLKELGVKVRYMHSDV 480

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           +T+ER++I+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIG
Sbjct: 481 ETIERMQIVRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 540

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN   KVI+YAD IT+S+Q AI+ET RRR  Q  +N+KH I P+++ + + +VI  +
Sbjct: 541 RAARNAEGKVIMYADRITQSMQKAINETNRRRAIQEAYNRKHGIVPKTIVKPVRDVIQAV 600

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                A     +D         +    +  LRK+M  AA +L+FE AA IRD I  L+  
Sbjct: 601 KPVAEAGPANILDT-----PPHEIPKVVAKLRKEMMQAAKDLDFERAAEIRDIIFELEKK 655


>gi|262373065|ref|ZP_06066344.1| excinuclease ABC, B subunit [Acinetobacter junii SH205]
 gi|262313090|gb|EEY94175.1| excinuclease ABC, B subunit [Acinetobacter junii SH205]
          Length = 674

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/665 (56%), Positives = 481/665 (72%), Gaps = 10/665 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + T+Y P+GDQP AI +L+KGI    + QLLLGVTGSGKT+TMA VI   QRP IVM
Sbjct: 6   PFDLVTNYQPAGDQPQAIEKLVKGIEQGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVM 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR
Sbjct: 66  AHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAINDHIDQMR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V + +++  LV+ QY R
Sbjct: 126 LSATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHIVQGDRVSRDDIIRRLVEMQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++  +RGT+R+ G+ I+IFP+  +  A RV +F ++++ I  F PLTG+ +R V  + I
Sbjct: 186 NELEFLRGTYRIRGEIIDIFPAESDQDAIRVELFDDEVDSIRWFDPLTGKLVRKVPRVTI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  SHYVTP+  L  A+  IK+ELK +L   +   +LLEAQR+EQR  YDLEM++  G  
Sbjct: 246 YPKSHYVTPKDHLTRAIDTIKDELKDQLKFFKDNDKLLEAQRIEQRTRYDLEMMQQLGYT 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+GR  GE PPTLF+YIPED+LL +DESHVT+PQI  MY+GD  RK  L  
Sbjct: 306 NGIENYSRHLSGRGAGEAPPTLFDYIPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVN 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRP++FEEW  + PTT+ VSATP  +ELE+ +  IVEQ++RPTGL+DP +
Sbjct: 366 YGFRLPSALDNRPMKFEEWERIVPTTVFVSATPAQYELEKSEQ-IVEQVVRPTGLIDPEI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   TQV+DV  EIN+  Q   R+L+T LTKRMAEDLT YL E  ++V Y+HS++ T+
Sbjct: 425 EVRPVLTQVDDVLSEINIRKQVNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTV 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++II +LR G  DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 485 ERVKIIHELRTGVHDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS-VKEKIMEVIDPILL 738
           RNV  K ILYAD IT S++ A+DET RRR KQ+E N+ H I P+S V++ I E+    +L
Sbjct: 545 RNVKGKAILYADRITDSMRKAMDETERRRNKQIEFNELHGITPRSAVRQTIKEIDTGEVL 604

Query: 739 EDAATTN--------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            D             IS D Q L    K    H+  L K+M  A+  L FE+AAR+RDEI
Sbjct: 605 SDDEIDEKVLEQAQSISADEQHLLSDPKLFAKHISKLEKEMLKASKELQFEQAARLRDEI 664

Query: 791 KRLKS 795
            R+K+
Sbjct: 665 VRMKA 669


>gi|157825404|ref|YP_001493124.1| excinuclease ABC subunit B [Rickettsia akari str. Hartford]
 gi|189037990|sp|A8GMJ1|UVRB_RICAH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|157799362|gb|ABV74616.1| excinuclease ABC subunit B [Rickettsia akari str. Hartford]
          Length = 661

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/660 (58%), Positives = 492/660 (74%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + ++Y P+GDQP AI +++ G++S+++ Q+LLG+TGSGKTFTMA +IE   RP +
Sbjct: 1   MNHFSLISEYKPAGDQPKAIDEIIAGLNSKKRSQMLLGITGSGKTFTMANIIERTNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MA NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINE ID 
Sbjct: 61  IMAHNKTLAAQIYSEMKSIFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEHIDL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSATRSLLER D IVV+SVSCIYG+GS + Y QM V L+ G S  + +LL+ L+  QY
Sbjct: 121 MRHSATRSLLERRDVIVVASVSCIYGLGSPDLYYQMTVNLEPGKSYPRDKLLNDLINLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR D+G  RG FRV GD+I+IFPSH  D AWR+S F N++E I EF PLTG+K+  ++  
Sbjct: 181 KRNDMGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFSNELEYIHEFDPLTGEKLAKLDKA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++ +SH+V P+ T+N A+  I+EEL+ RL  L+ + +LLE QRL QR  YDLEML  TG
Sbjct: 241 IVFGHSHFVMPQDTVNNAISGIEEELQKRLEFLKSQNKLLETQRLNQRTQYDLEMLTETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC+ +ENYSR+ TGRN GEPPPTLFEY+P+D+LLFVDESHV++PQI  MY  D  RK  L
Sbjct: 301 SCKGVENYSRFFTGRNAGEPPPTLFEYLPKDALLFVDESHVSVPQIKAMYNSDRARKEVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEEW   RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              I+ A  QVED+  EI     +GLR+L+T LTK+MAEDLT YL E   +  Y+HS V 
Sbjct: 421 ECIIKPATKQVEDLISEIQATVAKGLRVLVTTLTKKMAEDLTAYLQELKYKTSYLHSNVH 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI++DLR G  D+LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 481 TLERIEILQDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VILYAD +TKSI  A+ ET RRR+ Q E+N+KH I P+++   I  +     
Sbjct: 541 AARNSEGRVILYADKMTKSIDKALSETLRRRQIQQEYNEKHGIIPKTINRAIHAL---AT 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           LE   +   +  A  L  +  K KA++  L K+M  AA NL FE+AA++RD++K L+++ 
Sbjct: 598 LERVDSKCDTKQAHTLFDNTAKLKANINKLNKEMLKAASNLEFEQAAKLRDQLKTLEAAA 657


>gi|313672630|ref|YP_004050741.1| excinuclease abc subunit b [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939386|gb|ADR18578.1| Excinuclease ABC subunit B [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 655

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/656 (55%), Positives = 495/656 (75%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI Q+++   S    Q+LLGVTGSGKTFTMA VI+ +  P +++A
Sbjct: 3   FKLVSNYTPQGDQPEAIRQIVENFRSGIDRQVLLGVTGSGKTFTMANVIQELNVPTLIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SSIN+ ID+MRH
Sbjct: 63  HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSINDDIDKMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D I+++SVSCIYG+GS E+Y  M+V +++G+     E+L+ LV+ +Y+R 
Sbjct: 123 SATRSLLERRDVIIIASVSCIYGLGSPEAYYGMLVSVEVGEERVIDEILAKLVEIKYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I   RGTFRV GD IE+FPSH  D+A+R+  FG++I+ ISEF P+TG+ +     + IY
Sbjct: 183 EIDFHRGTFRVKGDVIEVFPSHESDLAYRIEFFGDEIDRISEFDPITGKTLYTRNKVAIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            N+HYVT + T+  A+K I+ +LK  +++ E++ +LLEAQRL+QR+ +DLEM++ TG C 
Sbjct: 243 PNTHYVTTKVTIEQAIKEIERDLKNSVVKFEQQQKLLEAQRLQQRVMFDLEMIKETGYCT 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY  GR PG PPPTL  Y+P+D+L+ +DESH+T+PQI GMY GD  RK TL EY
Sbjct: 303 GIENYSRYFDGRLPGTPPPTLMSYLPKDALVIIDESHITVPQIRGMYNGDRSRKMTLVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL+FEE+N +    + VSATP  +ELE  +G++VEQIIRPTGL+DP VE
Sbjct: 363 GFRLPAALDNRPLKFEEFNQIAKKILYVSATPSEYELEDSKGVVVEQIIRPTGLMDPEVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR A+ QV+D+  E      +G R+L+T LTKRMAEDLT Y+ +    V Y+HS++ TL+
Sbjct: 423 IRPAKNQVDDLIGEAYKVISRGERVLVTTLTKRMAEDLTRYMKDLGFSVEYLHSDIDTLD 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGK D+L+GINLLREGLD+PE  LVA+L+ADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RVKILRDLRLGKIDILIGINLLREGLDLPEVSLVAVLNADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K I YAD IT+SI+ A++ET RRR+KQL++N++H I P+++K +I  +++ I  +D
Sbjct: 543 NVNGKAIFYADRITESIKKAVEETARRRKKQLQYNQEHGITPETIKSEIKNILESIYEKD 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
               +I    +    S    +  +  L K+M+ AA++LNFE+AARIRD I   K+ 
Sbjct: 603 YFEYDIE---EFGIKSDGNIEKQIAELEKEMYKAAESLNFEKAARIRDIILEYKAR 655


>gi|269962086|ref|ZP_06176440.1| excinuclease ABC subunit B [Vibrio harveyi 1DA3]
 gi|269833170|gb|EEZ87275.1| excinuclease ABC subunit B [Vibrio harveyi 1DA3]
          Length = 676

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/671 (54%), Positives = 490/671 (73%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             +++ ++Y PSGDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRPAI+
Sbjct: 3   KVYELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAEAQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  ESY QM++ L+ GD ++Q+++L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RG FRV G+ I+IFP+  +  A RV MF ++++ IS F PLTG    R++   
Sbjct: 183 RNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRY 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK+EL++R  +L    +LLE QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPRERILDAIESIKDELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRP++FEE+  + P TI VSATPG++ELE+    I +Q++RPTGL+DP
Sbjct: 363 VEFGFRLPSALDNRPMKFEEFEAISPQTIFVSATPGNYELEKSADEIADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E ++RVRY+HS++ 
Sbjct: 423 ELEVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--- 734
           AARN+  K ILYAD+ITKS++ A+DET RRREKQ  +N +  I PQ++K  I ++++   
Sbjct: 543 AARNIEGKAILYADSITKSMKKAMDETDRRREKQKAYNAEMGIEPQALKRNIKDIMELGD 602

Query: 735 ---PILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                   +     +S  A+       +S ++ +  +  L   M+  A +L FE AA+ R
Sbjct: 603 ITKSKRQRNTKQVPLSKVAEPSQTYEIMSPQQLEKEISRLEAAMYQHAQDLEFELAAQKR 662

Query: 788 DEIKRLKSSPY 798
           DEI++L++   
Sbjct: 663 DEIEKLRAQFI 673


>gi|156975233|ref|YP_001446140.1| excinuclease ABC subunit B [Vibrio harveyi ATCC BAA-1116]
 gi|156526827|gb|ABU71913.1| hypothetical protein VIBHAR_02961 [Vibrio harveyi ATCC BAA-1116]
          Length = 676

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/671 (54%), Positives = 489/671 (72%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             +++ ++Y PSGDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRPAI+
Sbjct: 3   KVYELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAEAQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  ESY QM++ L+ GD ++Q+++L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RG FRV G+ I+IFP+  +  A RV MF ++++ IS F PLTG    R++   
Sbjct: 183 RNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRY 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK+EL++R  +L    +LLE QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPRERILDAIESIKDELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRP++FEE+  + P TI VSATPG++ELE+    I +Q++RPTGL+DP
Sbjct: 363 VEFGFRLPSALDNRPMKFEEFEAISPQTIFVSATPGNYELEKSADEIADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI + A Q  R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ 
Sbjct: 423 ELEVRPVATQVDDLLSEIRIRAAQDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--- 734
           AARN+  K ILYAD+ITKS++ A+DET RRREKQ  +N +  I PQ++K  I ++++   
Sbjct: 543 AARNIKGKAILYADSITKSMKKAMDETDRRREKQKAYNAEMGIEPQALKRNIKDIMELGD 602

Query: 735 ---PILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                   +     +S  A+       +S ++ +  +  L   M+  A +L FE AA+ R
Sbjct: 603 ITKSKRQRNTKQVPLSKVAEPSQTYEIMSPQQLEKEISRLEAAMYQHAQDLEFELAAQKR 662

Query: 788 DEIKRLKSSPY 798
           DEI++L++   
Sbjct: 663 DEIEKLRAQFI 673


>gi|108799967|ref|YP_640164.1| excinuclease ABC subunit B [Mycobacterium sp. MCS]
 gi|119869079|ref|YP_939031.1| excinuclease ABC subunit B [Mycobacterium sp. KMS]
 gi|108770386|gb|ABG09108.1| Excinuclease ABC subunit B [Mycobacterium sp. MCS]
 gi|119695168|gb|ABL92241.1| Excinuclease ABC subunit B [Mycobacterium sp. KMS]
          Length = 719

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/704 (50%), Positives = 482/704 (68%), Gaps = 30/704 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             +    +    F++ + Y P+GDQPAAI +L + I + E+  +LLG TG+GK+ T A +
Sbjct: 16  RPVEAMVRTGNRFEVVSPYQPAGDQPAAIDELERRIRAGERDVVLLGATGTGKSATTAWL 75

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP ++MAPNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+
Sbjct: 76  IERLQRPTLLMAPNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKD 135

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN+ ++R+RHSAT SLL R D +VV+SVSCIYG+G+ +SY    V+LK+GD V +  L
Sbjct: 136 SSINDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYMDRSVELKVGDEVPRDAL 195

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R D+   RGTFRV GD++EI PS+ E++A R+  FG+++E +   +PLTG
Sbjct: 196 LRLLVDVQYARNDMAFTRGTFRVRGDTVEIIPSY-EELAVRIEYFGDEVEALYYMHPLTG 254

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             +R V++++++  +HYV     +  A+  I++EL+ RL ELE +G+LLEAQRL  R  Y
Sbjct: 255 DVVRRVDSLRVFPATHYVAGPERMAQAISSIEKELEDRLAELEGQGKLLEAQRLRMRTNY 314

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G C  IENYSR++ GR PG  P TL +Y PED LL +DESHVT+PQI GMY 
Sbjct: 315 DIEMMRQVGFCSGIENYSRHIDGRGPGTAPATLIDYFPEDFLLVIDESHVTVPQIGGMYE 374

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L ++GFRLPS +DNRPL +EE+      T+ +SATPG +E+ Q  G  VEQ+
Sbjct: 375 GDMSRKRNLVDFGFRLPSAVDNRPLTWEEFASRIGQTVYLSATPGPYEMSQSGGEFVEQV 434

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++  + Q++D+  EI    +   R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 435 IRPTGLVDPQVIVKPTKGQIDDLIGEIRKRTELDERVLVTTLTKKMAEDLTDYLLELGIR 494

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSEV TL R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 495 VRYLHSEVDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRST 554

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +V +YAD IT S++ AIDET RRR KQ+ +N++  I+P+ +++K
Sbjct: 555 RSLIQTIGRAARNVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEERGIDPKPLRKK 614

Query: 729 IMEVIDPILLEDAATTNISIDA---------------------------QQLSLSKKKGK 761
           I +++D +  E   +  + +                                ++ + +  
Sbjct: 615 IADILDQVYREADDSETVEVGGSGRNASRGRRAQGEPGRAVSAGIVEGRDTANMPRAELA 674

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             +K L +QM  AA +L FE AARIRDEI+ LK     +G+D +
Sbjct: 675 DLIKDLTEQMMTAARDLQFELAARIRDEIQDLKKE--LRGMDAA 716


>gi|319942812|ref|ZP_08017113.1| UvrABC system protein B [Sutterella wadsworthensis 3_1_45B]
 gi|319803579|gb|EFW00540.1| UvrABC system protein B [Sutterella wadsworthensis 3_1_45B]
          Length = 690

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/676 (53%), Positives = 487/676 (72%), Gaps = 1/676 (0%)

Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183
            P  + S+  ++   + F +   + P+GDQPAAI  L  GI +    Q LLGVTGSGKTF
Sbjct: 11  VPPFAASMPTYAYPNSPFVLHAPFPPAGDQPAAIDALCAGIENGLMNQTLLGVTGSGKTF 70

Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243
           TMA +I     PAI+ APNK LAAQ YSE ++FFP NAVEYFVSYYD+YQPEAYVP  D 
Sbjct: 71  TMANIIAREGVPAIIFAPNKTLAAQTYSEMRDFFPENAVEYFVSYYDFYQPEAYVPARDL 130

Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303
           +IEK++++N+ I++MR +AT+S+LER D I+V++VS IYGIGS ESY+ M + L+ GD  
Sbjct: 131 FIEKDAAVNDHIEQMRLAATKSILERRDTIIVATVSAIYGIGSPESYTTMRMILRQGDRR 190

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            Q++L++ LVK QY R D+   RGTFRV GD+I+IFP+   + A RV +F ++++ +S F
Sbjct: 191 SQRQLINQLVKIQYTRSDMEFNRGTFRVRGDTIDIFPAEHAETAVRVELFDDEVDTVSLF 250

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
            PLTG+ ++ V+   +Y  SHYVTPR  +  A+  IK ELK+R  EL K+  L+EAQRLE
Sbjct: 251 DPLTGKVVQKVQRFVVYPASHYVTPRDEIVRAITSIKAELKVREAELLKDNLLVEAQRLE 310

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
           QR  +DLEML+  G C+ IENYSR+LTG  PG  PP L +Y+P D+L+F DESHV + Q+
Sbjct: 311 QRTNFDLEMLDQVGFCKGIENYSRHLTGLAPGAAPPCLIDYLPADALMFFDESHVMMGQL 370

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
            GMYRGD  RK TL  YGFRLPS +DNRPLRF+E+      +I VSATP  +ELE+CQG 
Sbjct: 371 GGMYRGDRARKETLVRYGFRLPSALDNRPLRFDEFEAKMRQSIFVSATPAEYELERCQGE 430

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
           +VEQ++RPTGLVDP VE+R A TQV+D+  EI+   +QG R+L+T LTK+MAEDLT++L 
Sbjct: 431 VVEQVVRPTGLVDPAVEVRPATTQVDDLLSEISETVKQGERVLVTTLTKKMAEDLTDFLS 490

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           E  ++VRY+HS++ T+ER+EIIRDLR GKFDVLVGINLLREGLDIPE  LVAILDADKEG
Sbjct: 491 EEGVKVRYLHSDIDTVERVEIIRDLRAGKFDVLVGINLLREGLDIPEVSLVAILDADKEG 550

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           FLRS  SLIQTIGRAARN++ + ILY D +T S++ A++ET RRR+KQ + N++H I PQ
Sbjct: 551 FLRSTRSLIQTIGRAARNLHGRAILYGDKMTDSMKAALNETNRRRQKQEDFNREHGIVPQ 610

Query: 724 SVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
            VK+ + E+ID +          S  +  + + +K     L+ L ++M   A NL+FE+A
Sbjct: 611 GVKKAVREIIDGVYRGPDVAPESSA-SDAVPMDEKTLSKRLRELEEEMMSYAKNLDFEKA 669

Query: 784 ARIRDEIKRLKSSPYF 799
           AR+R+E+  L+   + 
Sbjct: 670 ARVREELMALRKQAFG 685


>gi|259909036|ref|YP_002649392.1| excinuclease ABC subunit B [Erwinia pyrifoliae Ep1/96]
 gi|224964658|emb|CAX56172.1| UvrABC system protein B [Erwinia pyrifoliae Ep1/96]
 gi|283479053|emb|CAY74969.1| Excinuclease UvrABC subunit B [Erwinia pyrifoliae DSM 12163]
 gi|310767066|gb|ADP12016.1| excinuclease ABC subunit B [Erwinia sp. Ejp617]
          Length = 674

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/666 (55%), Positives = 473/666 (71%), Gaps = 9/666 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +++ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP +V
Sbjct: 3   KVFKLNSEFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTRGMVIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D A RV +F  ++E +S F PLTGQ    +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDYALRVELFDEEVERLSIFDPLTGQIESVIPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILQAMEEIKEELVQRKKVLLDNNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+ R PGE PPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRYLSARGPGEAPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP++FEE+  L P TI VSATPG +ELE+  G +++Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGHYELEKSGGEVIDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R   TQV+D+  EI        R+L+TVLTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 VEVRPVATQVDDLLSEIRQRVAINERVLVTVLTKRMAEDLTEYLTEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PI 736
           ARN++ K ILY D IT S+  AI ET RRREKQ  HN++H I PQ + +KI ++++    
Sbjct: 543 ARNLSGKAILYGDKITPSMARAIGETERRREKQQLHNEEHGIVPQGLNKKISDILELGQG 602

Query: 737 LLEDAATTN-------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           L ++ A          +  D   + LS +  +  +  L  QM   A NL FE+AA++RD+
Sbjct: 603 LAKNKAKPRNMKGRSIVEDDPAYVDLSPQGLQKRIHQLEAQMQQHAQNLEFEQAAQVRDQ 662

Query: 790 IKRLKS 795
           + +++ 
Sbjct: 663 LHQVRE 668


>gi|240128477|ref|ZP_04741138.1| excinuclease ABC subunit B [Neisseria gonorrhoeae SK-93-1035]
 gi|268686866|ref|ZP_06153728.1| UvrB [Neisseria gonorrhoeae SK-93-1035]
 gi|268627150|gb|EEZ59550.1| UvrB [Neisseria gonorrhoeae SK-93-1035]
          Length = 675

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/665 (53%), Positives = 480/665 (72%), Gaps = 5/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
             IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 TIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLR+G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRIGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ A+DET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+ +         ++ +    +++     +  L K M  AA +L FEEAA +RD I+ +K
Sbjct: 608 EEDSGKGRRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRNIK 667

Query: 795 SSPYF 799
            +  F
Sbjct: 668 ENLLF 672


>gi|167771427|ref|ZP_02443480.1| hypothetical protein ANACOL_02793 [Anaerotruncus colihominis DSM
           17241]
 gi|167666067|gb|EDS10197.1| hypothetical protein ANACOL_02793 [Anaerotruncus colihominis DSM
           17241]
          Length = 663

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/664 (52%), Positives = 468/664 (70%), Gaps = 5/664 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + P+GDQP AI  L +GI +    Q LLGVTGSGKTFTMA +IE + RP +
Sbjct: 1   MDKFKLVSPFKPTGDQPEAIEALTRGILAGAHEQTLLGVTGSGKTFTMANIIERVNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL SEF+ FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+S+IN++I++
Sbjct: 61  ILAHNKTLAAQLCSEFREFFPENAVEYFVSYYDYYQPEAYIAHTDTYIEKDSAINDEIEK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIY +G    Y  M+V L+ G   ++ EL+  LV+ QY
Sbjct: 121 LRHSATAALGERRDVIIVASVSCIYTLGDPIDYKNMVVSLRTGMQKDRDELIKKLVELQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI  +R  FRV GD +EIFP +  D A RV  FG++I+ I+E   +TG+    V   
Sbjct: 181 ERNDINFVRNKFRVRGDVVEIFPVYSGDTAVRVEFFGDEIDRITEINTVTGEVKNVVTHA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SHY+ P   +  A++ I+ E   R+   ++ G+L+EAQR+ +R  YD+EM++  G
Sbjct: 241 AIYPASHYIVPPEKMRVAIEEIRREADERVAYFKENGKLIEAQRIAERTNYDIEMMQEIG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSR ++GR PG  P TL +Y PED +LFVDESHVT+PQ+ GMY GD  RK +L
Sbjct: 301 FCKGIENYSRVISGRAPGSTPYTLLDYFPEDFVLFVDESHVTLPQVRGMYGGDRSRKISL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL F+E+       + VSATPG++E E+    IVEQ+IRPTGL DP
Sbjct: 361 IDYGFRLPSALDNRPLNFDEFYAKLNQIVFVSATPGAFEREKSTQ-IVEQVIRPTGLCDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    Q++D+  EIN  A  G R+L+T LTK+MAEDLT Y+    +R+RYMH ++ 
Sbjct: 420 EIEVRPVEGQIDDLLSEINQRAAAGERVLITTLTKKMAEDLTTYMENMGVRIRYMHHDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FD LVGINLLREGLDIPE  LVAILDADKEGFLRS+TSL+QTIGR
Sbjct: 480 TIERMEIIRDLRLGEFDALVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLVQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   KVI+YAD++T+S++ AI ET RRRE QL +N++H I PQ++K+ + ++++   
Sbjct: 540 AARNAQGKVIMYADSVTESMERAISETYRRREIQLAYNQEHGIVPQTIKKDVRDILEISA 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            +D  T       +   LS K+ +A +  L  +M  AA  L FE AA +RD+I++LK+  
Sbjct: 600 RDDRDTRK----KRGKKLSHKEREALIAKLTLEMKNAAKILEFEHAAYLRDKIQKLKAED 655

Query: 798 YFQG 801
              G
Sbjct: 656 ERPG 659


>gi|315641119|ref|ZP_07896198.1| excision endonuclease subunit UvrB [Enterococcus italicus DSM
           15952]
 gi|315483127|gb|EFU73644.1| excision endonuclease subunit UvrB [Enterococcus italicus DSM
           15952]
          Length = 664

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/657 (52%), Positives = 470/657 (71%), Gaps = 3/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y P+GDQP AI QL++ I+  +K Q+LLG TG+GKT+T++ VI+ + +P +++A
Sbjct: 10  FQLVSEYQPAGDQPEAIRQLVQHINDGKKEQILLGATGTGKTYTISNVIQQVNKPTLILA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND +VV+SVSCI+G+GS   Y + +V ++ G  + + E+L  L+  Q++R 
Sbjct: 130 SATSSLLERNDVVVVASVSCIFGLGSPFEYQKQVVSIREGMEISRDEVLRRLIDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A R+  FG++++ I E   LTG+   + E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPASRDERALRIEFFGDEVDRIREVDALTGEVYADTEHVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  I+EEL +RL  L +  +LLEAQRLEQR  YD+EM+   G   
Sbjct: 250 PATHFLTDGDHMEVAIAAIQEELALRLAVLRENNQLLEAQRLEQRTNYDIEMMREMGYTS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ VDESHVT+PQI GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRKEGEPPYTLLDFFPDDFLIVVDESHVTMPQIRGMYNGDRARKQMLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       I VSATPG +E E    ++V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLRIEEFEKHVHQIIYVSATPGPYEYEHT-DLVVQQIIRPTGLLDPLIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+M+EDLT+YLYE  I+V+Y+HS++KTLE
Sbjct: 429 VRPIMGQIDDLVGEINERVDRDERVFITTLTKKMSEDLTDYLYELGIKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLGKFDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 489 RTEIIRDLRLGKFDVLIGINLLREGLDVPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + KVI+YAD +T S+  AI+ET RRR  Q  +N++H I P ++K++I ++I    + +
Sbjct: 549 NSSGKVIMYADKMTDSMTRAIEETARRRGLQEAYNEEHGIVPVTIKKEIRDLIRVSKVAE 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
              T   + A+   LSKK  +  +  L  +M   A  L+FE AA +RD I  LK+  
Sbjct: 609 --DTPEPLLAKLSDLSKKDKRELIVKLEAEMREEAKALHFEAAATLRDTILELKAEL 663


>gi|312139895|ref|YP_004007231.1| excinuclease ABC subunit b uvrb [Rhodococcus equi 103S]
 gi|311889234|emb|CBH48548.1| excinuclease ABC subunit B UvrB [Rhodococcus equi 103S]
          Length = 764

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/763 (47%), Positives = 500/763 (65%), Gaps = 36/763 (4%)

Query: 76  GEFQSQSSISMSEKQT--REISEQTMTPSVQALARLIQSD----NPLLKNGKIWTPHRSW 129
              +  S+ S+ ++ T  R   ++  T    AL+ L+ +     +    +      H  +
Sbjct: 2   AAARPGSTFSIKQESTGKRGAGQRRSTGPRTALSELVGTGAYPGDMAFASEHPVVAHSEF 61

Query: 130 SI-NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
              +   +    FQ+ ++Y P+GDQP AI +L + +   EK  +LLG TG+GK+ T A +
Sbjct: 62  RPVSEIERSDARFQVVSEYEPAGDQPQAIDELERRLREGEKDVVLLGATGTGKSATTAWL 121

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+
Sbjct: 122 IERVQRPTLVMAPNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKD 181

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN+ ++R+RHSAT SLL R D +VV+SVSCIYG+G+ +SY    +QL++G  V++  L
Sbjct: 182 SSINDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSIQLEVGVEVDRDAL 241

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R D+   RG+FRV GD++EI PS+ E++A R+  FG+++E +   +PLTG
Sbjct: 242 LRLLVDVQYNRNDMAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEVEALYYLHPLTG 300

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             +R V+T++I+  +HYV     +  A++ I+ EL+ RL +LE  G+LLEAQRL  R  Y
Sbjct: 301 DVVRQVDTVRIFPATHYVAGPERMERAVQDIEAELEERLADLENRGKLLEAQRLRMRTQY 360

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEM++  G C  IENYSR++ GR  G  P TL +Y PED LL +DESHVT+PQI  MY 
Sbjct: 361 DLEMIKQVGFCSGIENYSRHIDGRPAGSAPATLIDYFPEDFLLVIDESHVTVPQIGAMYE 420

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L E+GFRLPS  DNRPL +EE+      T+ +SATPG++EL Q  G  VEQ+
Sbjct: 421 GDMSRKRNLVEFGFRLPSATDNRPLTWEEFAGRIGQTVYLSATPGAYELGQAGGEFVEQV 480

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++  + Q++D+  EI   +++  R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 481 IRPTGLVDPEVVVKPTKGQIDDLVHEIRERSERDERVLVTTLTKKMAEDLTDYLLELGIR 540

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ TL R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 541 VRYLHSDIDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRST 600

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD IT S+Q AI+ET RRREKQ+ +N +  ++PQ +++K
Sbjct: 601 TSLIQTIGRAARNVSGQVHMYADKITDSMQRAIEETERRREKQIAYNLEKGVDPQPLRKK 660

Query: 729 IMEVIDPILLEDAATT--------------------------NISIDAQQLSLSKKKGKA 762
           I +++D +  E   T                            I       S+ + +   
Sbjct: 661 IADILDQVYEEAEDTEVGVGGSGRNASRGRRAQGEAGRAVSAGIYEGRDVKSMPRAELAD 720

Query: 763 HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
            +K L  QM  AA +L FE A R+RDEI  LK     +G+D +
Sbjct: 721 LVKELTDQMMNAARDLQFELAGRLRDEIADLKKE--LRGMDAA 761


>gi|332686176|ref|YP_004455950.1| excinuclease ABC subunit B [Melissococcus plutonius ATCC 35311]
 gi|332370185|dbj|BAK21141.1| excinuclease ABC subunit B [Melissococcus plutonius ATCC 35311]
          Length = 664

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/664 (54%), Positives = 476/664 (71%), Gaps = 2/664 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +    F++ + Y P GDQP AI QL++GI   EK Q+LLG TG+GKTFT++ VI+ + 
Sbjct: 3   KKETSNKFELVSKYQPQGDQPEAIKQLIQGIDQGEKAQVLLGATGTGKTFTISNVIKEIN 62

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P +V+A NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN+
Sbjct: 63  KPTLVIAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASIND 122

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +ID++RHSAT +LLERND IVV+SVSCIYG+G  + YS+ +V L+ G  +E+ +LL+SL+
Sbjct: 123 EIDKLRHSATSALLERNDVIVVASVSCIYGLGDPKEYSEQVVSLRKGMEIERNQLLNSLI 182

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             Q++R DI   RG FRV GD +EIFP+  ++ A RV  FG++IE I E   LTG+ I +
Sbjct: 183 DIQFERNDIDFQRGRFRVHGDIVEIFPTSRDEHAIRVEFFGDEIERIREVDALTGELIDD 242

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           +E I I+  +H+VT    +  A++ I+ EL  RL  L  E +LLEAQRLEQR  YD+EM+
Sbjct: 243 LEHIAIFPATHFVTNEEQMEKAIQRIQTELDERLTTLRNENKLLEAQRLEQRTNYDVEMM 302

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
              G    IENYSR++ GR  GEPP TL ++ P+D L+ VDESHVT+PQI GMY GD  R
Sbjct: 303 REMGYTSGIENYSRHMEGREEGEPPYTLLDFFPDDFLIVVDESHVTMPQIRGMYNGDRAR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K  L +YGFRLPS +DNRPL+ EE+       + VSATPGS+E EQ    +V+QIIRPTG
Sbjct: 363 KQMLIDYGFRLPSALDNRPLQLEEFEKHVNQIVYVSATPGSYEEEQT-DKVVQQIIRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP +E+R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL E  I+V+Y+H
Sbjct: 422 LLDPKIEVRPIMGQIDDLVGEINERVAKDQRVFVTTLTKKMAEDLTDYLRELGIKVKYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++KTLER EIIR+LRLG+FDVL+GINLLREGLD+PE  L+AILDADKEG LRS+ SL+Q
Sbjct: 482 SDIKTLERTEIIRNLRLGEFDVLIGINLLREGLDVPEVSLIAILDADKEGLLRSERSLVQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAARN   KVI+Y D IT S+Q AIDET RRR  Q ++NK+H I P+++ ++I ++I
Sbjct: 542 TIGRAARNEEGKVIMYGDKITDSMQKAIDETARRRTIQEDYNKQHGIVPKTIIKEIRDLI 601

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                 D  T + S+D     LS ++ K  L  L K+M  AA  L+FE AA +RD I  L
Sbjct: 602 SISKTTDNKTIS-SMDTSYSKLSHQEKKDLLMKLEKEMRDAAKVLDFETAATLRDTILEL 660

Query: 794 KSSP 797
           K+S 
Sbjct: 661 KASE 664


>gi|313892790|ref|ZP_07826371.1| excinuclease ABC, B subunit [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313442721|gb|EFR61132.1| excinuclease ABC, B subunit [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 724

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/688 (52%), Positives = 483/688 (70%), Gaps = 28/688 (4%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    F+++  + P+GDQP AI  L +GI   E  Q+LLG TG+GKTFTMAKVIEA+Q+P
Sbjct: 9   EGGQPFKVEAPFTPTGDQPTAIQSLTEGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKP 68

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +++A NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++I
Sbjct: 69  TLIIAHNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEI 128

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SL ER D I+V+SVSCIYG+G  E YS++++ L++G +  + E+LS LV  
Sbjct: 129 DKLRHSATMSLFERRDVIIVASVSCIYGLGDPEDYSELVLSLRLGQTKSRDEILSKLVDI 188

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D+  IRGTFRV GD+IEIFP+   + A RV +FG++I+ + E   LTG+ I   +
Sbjct: 189 QYTRNDMNFIRGTFRVQGDTIEIFPAAYSERAIRVELFGDEIDRLVEVDALTGEVIAERK 248

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + +Y  SHYVT +  +  A++ I+ EL+ +L +L+   RLLEAQRLEQR  YD+EM++ 
Sbjct: 249 HVAVYPASHYVTTKDKMRIAVERIEAELEEQLAKLKAADRLLEAQRLEQRTRYDIEMMQE 308

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR+++ R  GE P TL +Y P+D L+ VDESHVT+PQ+  MY GD  RK 
Sbjct: 309 MGYCSGIENYSRHMSERKAGEAPYTLIDYFPDDFLIMVDESHVTMPQVRAMYNGDRARKE 368

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           +L EYGFRLPS +DNRPL+F+E+       + VSATPG +E+E  Q  + EQIIRPTGL+
Sbjct: 369 SLIEYGFRLPSALDNRPLQFDEFVERINQIVYVSATPGPYEME-VQTNVAEQIIRPTGLL 427

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR  + Q++D+  EI+  A +  R+L+T LTK+MAEDLTE+L E  +RVRY+HS+
Sbjct: 428 DPSIEIRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSD 487

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + T+ER EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T++IQTI
Sbjct: 488 IVTIERAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTI 547

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNVN  VI+YAD IT S+Q AIDET RRR  Q  +N +HNI P+SV + + E+I+ 
Sbjct: 548 GRAARNVNGHVIMYADRITGSMQRAIDETDRRRAVQEAYNIEHNITPKSVSKDVKELIEL 607

Query: 736 ILLEDAATTNISI---------------------------DAQQLSLSKKKGKAHLKSLR 768
             +E+   T+                                +   ++ ++    ++ L 
Sbjct: 608 TKIEEDIVTDGKAFSPKKGKKKSSTTGMDHGHEPYAQDISSPKVADITPEELFNKIEELD 667

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +QM  AA  L FE+AA++RD++  L+  
Sbjct: 668 RQMKAAAKQLEFEKAAKLRDQLGELRQQ 695


>gi|291458862|ref|ZP_06598252.1| excinuclease ABC subunit B [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418116|gb|EFE91835.1| excinuclease ABC subunit B [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 660

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/661 (52%), Positives = 463/661 (70%), Gaps = 3/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++  DY P+GDQP AI +L++G     + Q LLGVTGSGKTFTMA VIE ++RP ++++
Sbjct: 3   FKLHADYAPTGDQPKAIEELVRGFQEGNQFQTLLGVTGSGKTFTMANVIERLKRPTLIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K FFP N+VEYFVSYYDYYQPEAYVP TDTYIEK+S INE+ID++R+
Sbjct: 63  HNKTLAAQLYSEMKEFFPENSVEYFVSYYDYYQPEAYVPSTDTYIEKDSDINEEIDKLRN 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +L ER D +VV+SVSCIYG+G+   Y  M + L+ G S ++ E++  L++ QY R 
Sbjct: 123 SAMAALSERRDVVVVASVSCIYGLGAPTEYLNMALSLRPGQSKDRDEMIRHLIEIQYNRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +++FP+   + A+R+  FG++I+ I    PL+G+    +  + I+
Sbjct: 183 DMDFHRGTFRVMGDIVDVFPASEGEQAYRIEFFGDEIDRIRIIDPLSGKAKSELSHVMIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S YV P   L+ A   I +EL+ R+   + E +LLEAQR+ +R  +D+EML  TG C 
Sbjct: 243 PASPYVIPPEKLSLACDNILKELEERVNYFKSEDKLLEAQRISERTNFDVEMLRETGVCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L    PGEPP TL +Y PED L+ VDESH+++PQI GMY G+  RK TL +Y
Sbjct: 303 GIENYTRHLNFSAPGEPPYTLMDYFPEDFLIIVDESHISLPQIRGMYNGNLSRKTTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATPG +E E  + +  EQIIRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLNFGEFERKINQMLFVSATPGDYEAEH-ELLRAEQIIRPTGLLDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+  EI    ++  +IL+T LTKRMAEDLT+YL E  I V+Y+HS++ TLE
Sbjct: 422 VRPIRGQIDDLIGEIRRETEKKHKILVTTLTKRMAEDLTKYLKEAGILVKYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  IIRD+RLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQT+GRAAR
Sbjct: 482 RAAIIRDMRLGKFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTVGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S++  + ET RRR+ Q+ +N++H I P ++K+ + E+I       
Sbjct: 542 NAEGHVIMYADQITDSMRRTMQETERRRKIQISYNEEHGITPTTIKKAVRELIAISKAVS 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
            + + I  DA+  S+S ++ +  ++ L K+M  AA  LNFEEAA  RD I+ L+     +
Sbjct: 602 DSGSGIQKDAE--SMSARELEKLIRELTKRMRAAAAELNFEEAALCRDRIEELRKQKEGE 659

Query: 801 G 801
           G
Sbjct: 660 G 660


>gi|42518788|ref|NP_964718.1| excinuclease ABC subunit B [Lactobacillus johnsonii NCC 533]
 gi|81832263|sp|Q74K90|UVRB_LACJO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|41583074|gb|AAS08684.1| excinuclease ABC subunit B [Lactobacillus johnsonii NCC 533]
          Length = 671

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/658 (52%), Positives = 457/658 (69%), Gaps = 2/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G    EK Q+L G TG+GKTFTMA VI  + +P +V++
Sbjct: 10  FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
             T  L+ RND IVV+SVSCIYG+G    Y+  +V L  G  + +  LL  LV  QY R 
Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSLSEGQEISRDVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A+RV  FG++I+ I E   LTG+ I   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVDSLTGEVIGEREQVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFVTNEQIMERALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G+PP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL Q     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQT-DHKVEQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  E+N   ++  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIKGQIDDLVGEVNKRIERNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   L+QTIGRAAR
Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-LE 739
           N N KVI+YAD+IT S++ AID T RRR  Q++ NK+H I P+++ + I +VI      E
Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSE 608

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           D        D     L+KK+ +  +K+L  QM  AA  L+FEEAA +RD I  LK   
Sbjct: 609 DKENKESFADLNFDELTKKQKQNMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLKKQV 666


>gi|157828144|ref|YP_001494386.1| excinuclease ABC subunit B [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932843|ref|YP_001649632.1| excinuclease ABC subunit B [Rickettsia rickettsii str. Iowa]
 gi|189037994|sp|B0BWK0|UVRB_RICRO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189037995|sp|A8GR53|UVRB_RICRS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|157800625|gb|ABV75878.1| excinuclease ABC subunit B [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165907930|gb|ABY72226.1| excinuclease ABC subunit B [Rickettsia rickettsii str. Iowa]
          Length = 661

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/661 (59%), Positives = 491/661 (74%), Gaps = 3/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + ++Y P+GDQP AI +++ G+ S+++ Q+LLG+TGSGKTFTMA +IE   RP +
Sbjct: 1   MNNFSIISEYKPAGDQPKAIDEIIAGLSSKKRSQMLLGITGSGKTFTMANIIERTNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MA NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID 
Sbjct: 61  IMAHNKTLAAQIYSEMKSLFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRH+ATRSLLER D IVVSSVSCIYG+GS + Y QM+V L+ G S  + +LL+ L+  QY
Sbjct: 121 MRHAATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMVVNLEPGQSYLRDQLLNDLINLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DIG  RG FRV GD+I+IFPSH  D AWR+S FGN++E I EF PLTG+K+  ++  
Sbjct: 181 ERNDIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLAKLDKA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++ NSH+V P+ T+N A+  I+EEL+ RL  L+ + + LE QRL QR  YDLEML  TG
Sbjct: 241 IVFGNSHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC+ +ENYSR+ TGRN GEPPPTLFEY+PED+LLFVDESHV++PQI  MY GD  RK  L
Sbjct: 301 SCKGVENYSRFFTGRNAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKKVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEEW+  RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLKFEEWDKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              I+ A  QVED+  EI     QG R+L+T LTK+MAEDLT YL E   +  Y+HS V 
Sbjct: 421 ECIIKPATNQVEDLISEIQTTIAQGFRVLVTTLTKKMAEDLTAYLQELKYKTSYLHSNVH 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI+RDLR G  DVLVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 481 TLERIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VILYAD +TKSI  A+ ET RRR+ Q E+N+KH I P+++   I  + +   
Sbjct: 541 AARNSAGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGIIPKTINRAIHALAE--- 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            E   +      A  L  +  K K H+  L+K+M  AA NL FE+A ++RD++K L+ + 
Sbjct: 598 FEKIDSKLDKKQAHTLFDNPAKLKTHIDKLKKEMLKAASNLEFEQAVKLRDQLKTLEEAA 657

Query: 798 Y 798
            
Sbjct: 658 L 658


>gi|15672544|ref|NP_266718.1| excinuclease ABC subunit B [Lactococcus lactis subsp. lactis
           Il1403]
 gi|13878836|sp|Q9CI06|UVRB_LACLA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|12723449|gb|AAK04660.1|AE006290_5 excinuclease ABC subunit B [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406063|gb|ADZ63134.1| excinuclease ABC subunit B [Lactococcus lactis subsp. lactis CV56]
          Length = 692

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/684 (51%), Positives = 473/684 (69%), Gaps = 33/684 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQ  AIA+L+  I + EK Q+L G TG+GKT+TM++VI    +P +VMA
Sbjct: 11  FELVSKYEPAGDQGEAIAELVDNIENGEKAQILRGATGTGKTYTMSQVIARTGKPTLVMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 71  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCIYG+GS + Y   +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 131 SATSSLLERNDVIVVASVSCIYGLGSPKEYQDSVVSLRPGQEISRDQLLNDLVGIQFERN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 191 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRIREIEVLTGQVLGEVDHLAIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  ++  I+ EL+ +L     EG+LLEAQRLEQR  YD+EML   G C 
Sbjct: 251 PATHFMTNDDRMEESIAKIEAELEEQLKVFRSEGKLLEAQRLEQRTNYDIEMLREMGYCN 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR  GEPP TL ++ P+D ++ +DESH+T+ Q+ GMY GD  RK  L  Y
Sbjct: 311 GVENYSRHMDGREEGEPPYTLLDFFPDDFMIMIDESHMTMGQVKGMYNGDRARKEMLCNY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +E+EQ    IVEQIIRPTGL+DP VE
Sbjct: 371 GFRLPSALDNRPLKREEFESHVHQIVYVSATPGDYEMEQT-DTIVEQIIRPTGLLDPVVE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+  A++  R+ +T LTK+M+EDLT Y  E  I+V+YMHS++KTLE
Sbjct: 430 VRPMMGQIDDLVGEIHKRAEKNERVFVTTLTKKMSEDLTAYFKEMGIKVKYMHSDIKTLE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 490 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 549

Query: 681 NVNSKVILYAD-----------------------------TITKSIQLAIDETTRRREKQ 711
           N    VILY+D                              IT+S++ A+DET RRRE Q
Sbjct: 550 NSEGHVILYSDMAKALDENDPVDKEILDSGYYTEYEGQKYKITRSMKHAMDETARRREIQ 609

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771
           + +N++H I PQ++K++I ++I      D+       +    +++KK+ KA +K L K+M
Sbjct: 610 MAYNEEHGITPQTIKKEIRDLIAITKKTDSGEIE---EVDASAMTKKERKALVKKLEKEM 666

Query: 772 HLAADNLNFEEAARIRDEIKRLKS 795
             AA  L+FE AA++RD +  L++
Sbjct: 667 QQAASALDFEGAAQLRDMVLELRA 690


>gi|301059008|ref|ZP_07199974.1| excinuclease ABC, B subunit [delta proteobacterium NaphS2]
 gi|300446889|gb|EFK10688.1| excinuclease ABC, B subunit [delta proteobacterium NaphS2]
          Length = 663

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/659 (55%), Positives = 478/659 (72%), Gaps = 1/659 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++Q+++ P GDQP AI  L +GI    + Q+LLGVTGSGKTFTMA  I    R  +V+
Sbjct: 1   MFKLQSEFSPRGDQPQAIDALAEGITKGMRHQVLLGVTGSGKTFTMAHTIARTGRTTLVI 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E    FP NAV YFVSYYDYYQPEAY+P++DTYI+K+S IN+QID+MR
Sbjct: 61  APNKTLAAQLYGELHGLFPENAVHYFVSYYDYYQPEAYIPQSDTYIQKDSHINDQIDKMR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+ATR+LL+R+D I+V+SVSCIYG+GS E+Y  M++ L+ G ++ +++ +  LV+ QY+R
Sbjct: 121 HAATRALLDRDDVIIVASVSCIYGLGSPETYYDMLLYLETGSTLPREDAVKKLVEIQYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+   RG FRV GD ++I+P H ED A RV  FG+++E I E  PLTG+ +  +  I +
Sbjct: 181 GDMDFYRGRFRVRGDVLDIYPVHEEDRAVRVHFFGDEVEAIQEIDPLTGKTVAALSRIAV 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVT     + A++ IK EL  RL  L +E +LLEAQRLE+R  +DLEM+   G C
Sbjct: 241 YPATHYVTTTDIRDRAVEQIKSELTDRLAHLHEENKLLEAQRLEERTRFDLEMMSELGYC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LTGR  GEPPPTL +Y PED LL +DESH+TIPQ++GMYRGD  RK TL +
Sbjct: 301 HGIENYSLHLTGRQAGEPPPTLLDYFPEDYLLIIDESHITIPQLNGMYRGDRSRKETLVQ 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+       + VSATPG WEL++ +  IVEQIIRPTGLVDP +
Sbjct: 361 YGFRLPSALDNRPLRFEEFESRVNQAVYVSATPGPWELDRTES-IVEQIIRPTGLVDPEI 419

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R A  QV+D+   I     +  R+L+T LTKRMAEDLTEY  E +IRVRYMHS++KTL
Sbjct: 420 EVRPAGNQVDDLLARIRDRVARNERVLVTTLTKRMAEDLTEYYAELDIRVRYMHSDIKTL 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLR+G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT GRA+
Sbjct: 480 ERMEIIRDLRMGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTCGRAS 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN +VILY D +T S++ A+DE+ RRR  QL +N++H++ P++VK+ I  ++      
Sbjct: 540 RNVNGRVILYGDHVTGSMRRAMDESNRRRLLQLAYNREHDLTPETVKKNIDVILGSPYEA 599

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           D  T  ++ +A+   +S  + +  ++ L+ +MH AA  L FEEAA  RD IK L+    
Sbjct: 600 DYVTVPMAAEAEAPWVSPDQLEEIVEELKGKMHDAAKKLAFEEAAVYRDRIKELEQQEL 658


>gi|285018639|ref|YP_003376350.1| excinuclease ABC subunit b protein [Xanthomonas albilineans GPE
           PC73]
 gi|283473857|emb|CBA16359.1| probable excinuclease abc subunit b protein [Xanthomonas
           albilineans]
          Length = 672

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/666 (55%), Positives = 485/666 (72%), Gaps = 8/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AI +L+ G  +    Q LLGVTGSGKT+T+A V++A+Q+P +VMA
Sbjct: 5   FQLVSPYSPAGDQPQAIEKLVAGFEAGLAKQTLLGVTGSGKTYTIANVVQAIQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKAFFPSNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++LL R D +VV++VS IYG+G+ E Y  + + L IG+ +EQ++L+  L   QY R 
Sbjct: 125 AATKTLLSRRDALVVATVSAIYGLGAPEDYLSLRLILSIGEHIEQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG+FRV G+ I++FP+  +  A R+ +F  D+E+++ F PLTG+ +R ++   IY
Sbjct: 185 EYELHRGSFRVRGEVIDVFPAESDSEALRIELFDGDVEQLALFDPLTGETLRKLQRYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IK ELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKLELKQRLEQLYAQNKLVEAQRLAQRTQFDLEMMAEVGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+  GEPPPTLF+Y+P D+LL VDESHVT+PQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAAGEPPPTLFDYLPPDALLVVDESHVTVPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G + E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTELVVRPTGLIDPQVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  +INL    G R+L+T LTKRMAE+LTEYL E  ++VRY+HS++ T+E
Sbjct: 425 IRPVATQVDDLLSQINLRVADGDRVLVTTLTKRMAENLTEYLGEHGVKVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDET RRREKQ+E+N  H I P+SV   I+++++      
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETGRRREKQVEYNLAHGITPKSVARPIVDILEGARESA 604

Query: 741 AATTNISID--------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           A   +            A   +L   +  A LK+L ++M+  A +L FE+AAR+RD++K+
Sbjct: 605 AEAKSGKGKARRVTEEPADYRALEPAEIAARLKALEQKMYQHARDLEFEDAARVRDQMKK 664

Query: 793 LKSSPY 798
           L+ +  
Sbjct: 665 LRDTSL 670


>gi|116625433|ref|YP_827589.1| excinuclease ABC subunit B [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228595|gb|ABJ87304.1| Excinuclease ABC subunit B [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 659

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/655 (52%), Positives = 471/655 (71%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P GDQ  AIA+L +G+   E+ Q+LLGVTGSGKTFTMAKVIEA+ RPA+V+A
Sbjct: 3   FRLAVTYEPRGDQVNAIAELTRGLREGEQHQVLLGVTGSGKTFTMAKVIEAVNRPALVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+P +D YIEK++++N+++D++R 
Sbjct: 63  HNKTLAAQLYHEFKTFFPENAVEYFVSYYDYYQPEAYIPASDVYIEKDATVNDELDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT+SL ER DC++VSSVSCIYG+GS E+Y  M++ L+ G  + + ++++ LV+  Y R 
Sbjct: 123 AATKSLFERRDCVIVSSVSCIYGLGSPEAYYGMLLMLEKGQKISRNQIVTRLVEILYDRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD IE++P++ +D A+R+ ++G++IE +S+  PL GQ  +  + + IY
Sbjct: 183 DADFRRGTFRVRGDVIEVYPTYDDD-AYRIELWGDEIENLSQIDPLLGQVKQTYQRLPIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV    T   AM+ I+ EL+    EL  +G+ +EAQRL QR  +DLEM++  G C 
Sbjct: 242 PKTHYVMSAETKEDAMQSIRNELEWWHKELVNQGKAIEAQRLFQRTMFDLEMMKEIGYCH 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +GR PGE PPTL +Y+P D+++F+DESH T+PQ+ GMY GD  RK  L  +
Sbjct: 302 GIENYSRHFSGRLPGEAPPTLLDYLPNDAVMFLDESHQTVPQLHGMYHGDRSRKEVLVAH 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFR+PS +DNRPL FEE+       + VSATPG +EL +  G++VEQIIRPTGL+DP VE
Sbjct: 362 GFRMPSALDNRPLTFEEFEHRVNQLVYVSATPGPYELTKSSGVVVEQIIRPTGLLDPTVE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + QV+D+  +I    +   RIL+T LTKRMAEDL+EY  E  +R RY+HSEV TL+
Sbjct: 422 IRPVKGQVDDLLGQIRARVENNQRILVTTLTKRMAEDLSEYYSEVGVRCRYLHSEVTTLD 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI+I+RDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  +LIQTIGRAAR
Sbjct: 482 RIKILRDLRRGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSWGALIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V    ILYAD +T S++ A+ ET RRR+ Q+E+N++++I PQS+ + I   +  +   D
Sbjct: 542 HVEGHAILYADVMTDSMRKALAETARRRQTQIEYNEENHITPQSIIKAIDMSLVAVAEGD 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T  +  D +   L+  +    +  L ++M  AA    FE AA++RD +K LK+
Sbjct: 602 YVTVPLEDDPEVEDLTPDQRLRFIGELEERMREAARKFEFERAAQLRDRVKALKA 656


>gi|187931548|ref|YP_001891532.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712457|gb|ACD30754.1| excinuclease ABC, B subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 668

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/667 (53%), Positives = 480/667 (71%), Gaps = 7/667 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + T Y P+GDQP AI  L+ GI++  + Q+LLGVTGSGKT+TMA VI+  Q+P +
Sbjct: 1   MNKFNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++
Sbjct: 61  ILAHNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT+++LERND I+V++VS IYG+G  E Y+QM++ LK+G+ +  K+  + LV+ QY
Sbjct: 121 MRLSATKAILERNDVIIVATVSAIYGLGDPEQYTQMLLHLKVGEELGLKKAQTKLVEMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +K++++   
Sbjct: 181 SRNDMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+ ++HYV  +      ++ IK+ELK R+   EKEG+LLEAQR+EQR  YD+EM++  G
Sbjct: 241 TIFPSTHYVASKERKEIVIEDIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RK+ L
Sbjct: 301 YCTGIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   V+Q+IRPTGL+DP
Sbjct: 361 VNYGFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R    QVED   EIN A  +  R+L+T LTK+M E+LTEYL E  + VRY+HS++ 
Sbjct: 420 EVFVRPVAIQVEDALSEINKAIAKEERVLITTLTKKMVENLTEYLSEHGVNVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRSK SLIQTIGR
Sbjct: 480 TVERVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSKKSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--P 735
            ARN N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D  P
Sbjct: 540 VARNQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSP 599

Query: 736 ILLEDAATTNISIDAQQLSLSK----KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            + + A   N+ +    + +S      +    +K+L K+M   A  L FE+A  IRD+I 
Sbjct: 600 EMQKRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKIT 659

Query: 792 RLKSSPY 798
            +K    
Sbjct: 660 EIKQKFI 666


>gi|153835330|ref|ZP_01987997.1| excinuclease ABC, B subunit [Vibrio harveyi HY01]
 gi|148868170|gb|EDL67325.1| excinuclease ABC, B subunit [Vibrio harveyi HY01]
          Length = 676

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/671 (54%), Positives = 489/671 (72%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             +++ ++Y PSGDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRPAI+
Sbjct: 3   KVYELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAEAQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  ESY QM++ L+ GD ++Q+++L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RG FRV G+ I+IFP+  +  A RV MF ++++ IS F PLTG    R++   
Sbjct: 183 RNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLPRY 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK+EL++R  +L    +LLE QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPRERILDAIESIKDELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRP++FEE+  + P TI VSATPG++ELE+    I +Q++RPTGL+DP
Sbjct: 363 VEFGFRLPSALDNRPMKFEEFEAISPQTIFVSATPGNYELEKSADEIADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI + A Q  R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ 
Sbjct: 423 ELEVRPVATQVDDLLSEIRIRAAQDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--- 734
           AARN+  K ILYAD+ITKS++ A+DET RRREKQ  +N +  I PQ++K  I ++++   
Sbjct: 543 AARNIKGKAILYADSITKSMKKAMDETDRRREKQKAYNAEMGIEPQALKRNIKDIMELGD 602

Query: 735 ---PILLEDAATTNISIDAQQLS----LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                   +     +S  A+       +S ++ +  +  L   M+  A +L FE AA+ R
Sbjct: 603 ITKSKRQRNTKQVPLSKVAEPSQTYEIMSPQQLEKEISRLEGAMYQHAQDLEFELAAQKR 662

Query: 788 DEIKRLKSSPY 798
           DEI++L++   
Sbjct: 663 DEIEKLRAQFI 673


>gi|225027283|ref|ZP_03716475.1| hypothetical protein EUBHAL_01539 [Eubacterium hallii DSM 3353]
 gi|224955385|gb|EEG36594.1| hypothetical protein EUBHAL_01539 [Eubacterium hallii DSM 3353]
          Length = 664

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/667 (52%), Positives = 476/667 (71%), Gaps = 3/667 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +D+ P+GDQP AI +L+KG     + + LLGVTGSGKTFTMA VI  + +P +
Sbjct: 1   MDHFELVSDFAPTGDQPQAIEELVKGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID+
Sbjct: 61  ILAHNKTLAAQLYSEFKAFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L+ER D IVVSSVSCIYGIGS   Y++M++ L+ G  +++ E++  L+  QY
Sbjct: 121 LRHSATAALIERKDVIVVSSVSCIYGIGSKNDYAKMMISLRPGMEIDRDEVVRRLIDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FRV GD +E+ P    + A  +  FG++I+ I +   LTG+   ++   
Sbjct: 181 VRNELDFKRGSFRVRGDVLEVVPVSSFEDAIHIEFFGDEIDRIMQVDVLTGEIKASLNFA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV P+  +  A+K IKEEL  R+   ++  +LLEAQR+ +R  +D+EML+ TG
Sbjct: 241 IIFPASHYVVPQEQIERAVKTIKEELDERVEYFKENDQLLEAQRISERTNFDIEMLKETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTG  PG+ P TL ++  +D L+ VDESH+TIPQ+ GMY GD  RK TL
Sbjct: 301 FCSGIENYSRHLTGLEPGKAPYTLIDFFGDDFLMIVDESHITIPQVRGMYAGDRSRKQTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS +DNRPL F+E+       + VSATP  +E E  + +  EQIIRPTGL+DP
Sbjct: 361 VDFGFRLPSALDNRPLNFDEFEERIDQMLFVSATPNVYEGEH-EMLRAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+++R    Q++D+  EIN    +  ++L+T LTKRMAEDLT Y+ E +IRV+Y+HS++ 
Sbjct: 420 PIDVRPVEGQIDDLISEINKEVAKKNKVLVTTLTKRMAEDLTAYMKELDIRVKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI+RDLR+G FDVLVGINLLREGLDIPE  L+AILDADKEGFLRS+TSL+QTIGR
Sbjct: 480 TLERIEIVRDLRMGVFDVLVGINLLREGLDIPEVTLIAILDADKEGFLRSETSLVQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+Y DTIT S++ AI ET RRRE Q+ +N++H I P+++++ I +VI    
Sbjct: 540 AARNAEGHVIMYGDTITDSMRAAITETKRRREIQMAYNEEHGITPKTIQKAIRDVISITN 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            E    +  S+     S+++K+    +  L K+M+ AA  LNFEEAA +RDE+K+ K   
Sbjct: 600 EEAPEKSRGSLKKDMESMNRKELTEMIAKLTKKMNKAAAELNFEEAAELRDELKKYK--I 657

Query: 798 YFQGLDD 804
             +  DD
Sbjct: 658 ALRDYDD 664


>gi|319779606|ref|YP_004130519.1| Excinuclease ABC subunit B [Taylorella equigenitalis MCE9]
 gi|317109630|gb|ADU92376.1| Excinuclease ABC subunit B [Taylorella equigenitalis MCE9]
          Length = 670

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/660 (56%), Positives = 480/660 (72%), Gaps = 1/660 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F +   + PSGDQP+AI  L++G+      Q L+GVTGSGKTFTMA VI  + RPA++
Sbjct: 10  SPFLLYQSWEPSGDQPSAIKSLVEGVQDGLMNQTLIGVTGSGKTFTMANVIAQLGRPALI 69

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+IN+ I++M
Sbjct: 70  LAHNKTLAAQLYAEMREFFPKNAVEYFVSYYDYYQPEAYVPSRDLFIEKDSNINDHIEQM 129

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+SLLER D I+V +VS IYGIG    Y  M++ L+ GD + ++ +L  LV  QY+
Sbjct: 130 RLSATKSLLERRDTIIVGTVSTIYGIGDASDYQAMVLILRTGDKISRESILERLVSMQYE 189

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG FRV GD I+IFPS   ++A RV++F +++E++  F PLTG+  +++    
Sbjct: 190 RNDMEFARGHFRVRGDIIDIFPSESPELALRVTLFDDELEKLELFDPLTGRIRQDIIRFT 249

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +S YVTPR T+  A++ IKEELK R+ E    G L+ AQR+EQR  +DLEML   G 
Sbjct: 250 LYPSSLYVTPRSTVLRAIETIKEELKQRVKEFLDRGELVYAQRIEQRTRFDLEMLHELGF 309

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+G  PG+PPPTL +Y+P+D+L+F DESHV + Q+ GMYRGD  RKATL 
Sbjct: 310 CKGIENYSRHLSGAKPGDPPPTLIDYLPKDALMFFDESHVMMGQLRGMYRGDHSRKATLV 369

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS +DNRPL+ EE+      +I VSATP  +ELE+    IVEQ++RPTGLVDP 
Sbjct: 370 QFGFRLPSALDNRPLKMEEFEARMKQSIFVSATPAEYELERSDN-IVEQVVRPTGLVDPT 428

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VEIR A TQV+D+  E  L   +G R+L+T LTKRMAEDLTEYL E  +RVRY+HS++ T
Sbjct: 429 VEIRPALTQVDDLLGEAKLRIAKGERVLVTTLTKRMAEDLTEYLSENFLRVRYLHSDIDT 488

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 489 VERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 548

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N   ILYAD IT S++ AIDET RR EKQ+ +NK H I P++VK+ + ++ID +L 
Sbjct: 549 ARNINGSAILYADKITDSMKKAIDETERRHEKQMAYNKAHGITPKTVKKAVKDIIDGVLH 608

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           +       +ID   L   +K+  + +K L KQM   A NL FEEAA+ RD++ +LK    
Sbjct: 609 DSLEDMQETIDMSDLLKDEKRLSSEIKKLEKQMLEHAKNLEFEEAAKARDQLSKLKEKFL 668


>gi|329667663|gb|AEB93611.1| excinuclease ABC subunit B [Lactobacillus johnsonii DPC 6026]
          Length = 671

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/658 (52%), Positives = 457/658 (69%), Gaps = 2/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G    EK Q+L G TG+GKTFTMA VI  + +P +V++
Sbjct: 10  FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
             T  L+ RND IVV+SVSCIYG+G    Y+  +V L  G  + +  LL  LV  QY R 
Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSLSEGQEISRDVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A+RV  FG++I+ I E   LTG+ I   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVDSLTGEVIGEREQVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFVTNEQIMERALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G+PP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL Q     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQT-DHKVEQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  E+N   ++  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIKGQIDDLVGEVNKRIERNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   L+QTIGRAAR
Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD+IT S++ AID T RRR  Q++ NK+H I P+++ + I +VI      D
Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRCLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608

Query: 741 AATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                 S  D     L+KK+ +  +K+L  QM  AA  L+FEEAA +RD I  LK   
Sbjct: 609 DKENKESFADLNFDELTKKQKQNMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLKKQV 666


>gi|229586447|ref|YP_002844948.1| excinuclease ABC subunit B [Rickettsia africae ESF-5]
 gi|259710331|sp|C3PMP5|UVRB_RICAE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|228021497|gb|ACP53205.1| Excinuclease ABC subunit B [Rickettsia africae ESF-5]
          Length = 661

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/661 (58%), Positives = 491/661 (74%), Gaps = 3/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + ++Y P+GDQP AI +++ G+ S+++ Q+LLG+TGSGKTFTMA +IE   RP +
Sbjct: 1   MNNFSIISEYKPAGDQPKAIDEIIAGLSSKKRSQMLLGITGSGKTFTMANIIERTNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MA NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID 
Sbjct: 61  IMAHNKTLAAQIYSEMKSLFPKNAVEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRH+ATRSLLER D IVVSSVSCIYG+GS + Y QM+V L+ G S  + +LL+ L+  QY
Sbjct: 121 MRHAATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMMVNLEPGQSYPRDQLLNDLINLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DIG  RG FRV GD+I+IFPSH  D AWR+S FGN++E I EF PLTG+K+  ++  
Sbjct: 181 ERNDIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLAKLDKA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++ NSH+V P+ T+N A+  I+EEL+ RL  L+ + + LE QRL QR  YDLEML  TG
Sbjct: 241 MVFGNSHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC+ +ENYSR+ TGRN GEPPPTLFEY+PED+LLFVDESHV++PQI  MY GD  RK  L
Sbjct: 301 SCKGVENYSRFFTGRNAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKKVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEEW+  RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLKFEEWDKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              I+ A  QVED+  E+     QG R+L+T LT++MAEDLT YL E   +  Y+HS V 
Sbjct: 421 ECIIKPATNQVEDLISEMQTTIAQGFRVLVTTLTQKMAEDLTAYLQELKYKTSYLHSNVH 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI+RDLR G  DVLVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 481 TLERIEILRDLRQGTIDVLVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VILYAD +TKSI  A+ ET RRR+ Q E+N+KH I P+++   I  + +   
Sbjct: 541 AARNSAGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGITPKTINRAIHALAE--- 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            E   +      A  L  +  K K H+  L+K+M  AA NL FE+A ++RD++K L+ + 
Sbjct: 598 FEKIDSKLDKKQAHTLFDNAAKLKTHIDKLKKEMLKAASNLEFEQAVKLRDQLKTLEEAA 657

Query: 798 Y 798
            
Sbjct: 658 L 658


>gi|268319816|ref|YP_003293472.1| excinuclease ABC, B subunit , UvrABC system [Lactobacillus
           johnsonii FI9785]
 gi|262398191|emb|CAX67205.1| excinuclease ABC, B subunit , UvrABC system [Lactobacillus
           johnsonii FI9785]
          Length = 671

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/658 (52%), Positives = 457/658 (69%), Gaps = 2/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G    EK Q+L G TG+GKTFTMA VI  + +P +V++
Sbjct: 10  FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
             T  L+ RND IVV+SVSCIYG+G    Y+  +V L  G  + +  LL  LV  QY R 
Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSLSEGQEISRDVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A+RV  FG++I+ I E   LTG+ I   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVDSLTGEVIGEREQVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFVTNEQIMERALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G+PP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL Q     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQT-DHKVEQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  E+N   ++  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIKGQIDDLVGEVNKRIERNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   L+QTIGRAAR
Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD+IT S++ AID T RRR  Q++ NK+H I P+++ + I +VI      D
Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608

Query: 741 AATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                 S  D     L+KK+ +  +K+L  QM  AA  L+FEEAA +RD I  LK   
Sbjct: 609 DKENKESFADLNFDELTKKQKQNMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLKKQV 666


>gi|296451821|ref|ZP_06893540.1| excision endonuclease subunit UvrB [Clostridium difficile NAP08]
 gi|296879783|ref|ZP_06903757.1| excision endonuclease subunit UvrB [Clostridium difficile NAP07]
 gi|296259300|gb|EFH06176.1| excision endonuclease subunit UvrB [Clostridium difficile NAP08]
 gi|296429254|gb|EFH15127.1| excision endonuclease subunit UvrB [Clostridium difficile NAP07]
          Length = 668

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/661 (52%), Positives = 479/661 (72%), Gaps = 5/661 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D   F++++D+ P+GDQP AI  ++  I+  EK   LLGVTGSGKTFTMA +I+ +++P 
Sbjct: 11  DTMDFKIKSDFKPTGDQPEAIKSIVDSINRNEKFSTLLGVTGSGKTFTMANIIQQVKKPT 70

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           ++MA NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV  +DTYIEK++SIN++ID
Sbjct: 71  LIMAHNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEID 130

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++RHSAT S+LER D I++SSVSCIYG+G  + Y ++++ ++ G   ++ +++  L++ Q
Sbjct: 131 KLRHSATASILERRDTIIISSVSCIYGLGDPKDYKELMLSIRPGMQRDRDDVIKRLIEIQ 190

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R DI   RGTFRV GD +EIFP+  ++ A R+  FG++++ I+E   +TG+ +     
Sbjct: 191 YERNDINFTRGTFRVRGDILEIFPASNDEKAIRIEFFGDEVDRITEIDYVTGKIVGTRNH 250

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           + I+  SHYVT    +  A+  I++EL+ ++   ++  RLLEAQR+EQR  YD+EML+  
Sbjct: 251 VVIFPASHYVTTPERIEKAIIEIEDELQEQIKFFKENDRLLEAQRIEQRTKYDIEMLKEI 310

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G CQ IENYSR++TGR+ GE P TL ++ P+D L+ VDE+HVTIPQ+ GMY GD  RK +
Sbjct: 311 GFCQGIENYSRHITGRSEGERPYTLMDFFPDDYLIIVDEAHVTIPQVRGMYAGDRSRKTS 370

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L E GFRLPS +DNRPL F+E+       + VSATPG +E++  +  I EQIIRPTGL+D
Sbjct: 371 LIENGFRLPSALDNRPLNFQEFEGNINQMLFVSATPGPYEIQHSE-TIAEQIIRPTGLLD 429

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P VE+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT YL E  I+V+Y+HS++
Sbjct: 430 PIVEVRPINNQIDDLVGEITKTIEKNERVLITTLTKKMSEDLTNYLKEIGIKVKYLHSDI 489

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER EIIRDLRLGKFDVLVGINLLREGLDIPE  L+AILDADKEGFLRS+T+LIQTIG
Sbjct: 490 VTLERTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETALIQTIG 549

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N +VI+YAD IT S+Q AIDET RRR+ Q  +N++HNI P+++++ I + I+  
Sbjct: 550 RAARNENGRVIMYADRITDSMQNAIDETKRRRDIQNLYNEEHNITPKTIQKNIRDSIEAT 609

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            + +        D       K + +A++  L+ +M  AA NL FE AA +RD++K+L+  
Sbjct: 610 KVAEEEVVYGISDTD----DKDEIRANIDKLKSEMMEAAQNLQFERAAELRDKVKQLEEK 665

Query: 797 P 797
            
Sbjct: 666 L 666


>gi|291542540|emb|CBL15650.1| Excinuclease ABC subunit B [Ruminococcus bromii L2-63]
          Length = 652

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/656 (53%), Positives = 461/656 (70%), Gaps = 7/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP  I +L+  I++  + Q LLGVTGSGKTFTMA VI+ +QRP +V+A
Sbjct: 3   FKLHSKYQPTGDQPQTIEKLVNSINAGNREQTLLGVTGSGKTFTMANVIQKVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAYV +TDTYIEK+SSIN++ID++RH
Sbjct: 63  HNKTLAAQLCSEFKEFFPDNAVEYFVSYYDYYQPEAYVAQTDTYIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +G    Y  M++ L+ G    + EL+  LV+ QY+R 
Sbjct: 123 SATLALSERRDVIIVASVSCIYSLGDPIDYRNMVISLRPGMEKSRDELVKKLVELQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R  FRV GD +EIFP+   D   RV  FG++I+ ISE  PLTG+    ++   IY
Sbjct: 183 DVSFTRNKFRVRGDVVEIFPAASNDSIIRVEFFGDEIDRISEINPLTGELKAVLKHAAIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+     +  A+  I  EL+ RL    + G+LLEAQRLEQR  YD+EML+  G C 
Sbjct: 243 PASHYIVSGDKMKKALAEIDRELEERLAYFRENGKLLEAQRLEQRTRYDMEMLQEIGFCT 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR ++GR PG  P TL  Y P+D LLFVDESHVT+PQ+ GM+ GD+ RK +L +Y
Sbjct: 303 GIENYSRIMSGRAPGSSPYTLLSYFPDDFLLFVDESHVTLPQVRGMFAGDYARKKSLIDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       + VSATPG +ELE+   ++ EQIIRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLNFDEFYSKINQAVYVSATPGDFELEKS-AVVAEQIIRPTGLLDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN+   +  R L+T LTK+MAEDLT YL +  IRVRYMH ++ T+E
Sbjct: 422 VRPTEGQLDDLVSEINIRTAKNQRTLVTTLTKKMAEDLTAYLEKLGIRVRYMHHDIDTVE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG+FDVLVGINLLREGLDIPE  LVA+LDADKEGFLRS  SLIQ  GRAAR
Sbjct: 482 RMEIVRDLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSTRSLIQIAGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD++T S+++AI ET RRRE Q ++N +H I P+++ +K+ ++++    +D
Sbjct: 542 NSEGTVIMYADSVTPSMKVAITETQRRREIQNKYNVEHGIVPKTIVKKVSDILEISTHDD 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +   N         LSK + +  ++ L K+M  AA  L FE AA +RD+IK+L+  
Sbjct: 602 SEFKNTK------KLSKAQKQQLIEKLTKEMKAAAKLLEFEHAAYLRDKIKKLRGE 651


>gi|290474038|ref|YP_003466912.1| ATP-dependent DNA excision repair enzyme UvrAC [Xenorhabdus
           bovienii SS-2004]
 gi|289173345|emb|CBJ80122.1| ATP-dependent DNA excision repair enzyme UvrAC [Xenorhabdus
           bovienii SS-2004]
          Length = 672

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/662 (55%), Positives = 474/662 (71%), Gaps = 6/662 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +D+ P GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP ++
Sbjct: 4   KVFKLHSDFEPGGDQPDAIRKLQEGLEDGLAHQTLLGVTGSGKTFTIANVIANLNRPTMI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLYSE K FFP N+VEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 64  LAPNKTLAAQLYSEMKEFFPENSVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  +SY +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 124 RLSATKALLERRDVVVVASVSAIYGLGDPDSYLKMMLHLTDGMLIDQRAILHRLAELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+   + A RV +F +++E +S F PLTGQ   NV    
Sbjct: 184 RNDQAFQRGTFRVRGEVIDIFPAESNEHALRVELFDDEVERLSLFDPLTGQIQYNVPRYT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  AM+ IK EL+ R   L    +LLE QR+ QR  +DLEM+   G 
Sbjct: 244 VYPKTHYVTPRERITQAMEDIKVELEQRRKMLLASDKLLEEQRITQRTQFDLEMMNELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GEPPPTLF+Y+  D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 304 CSGIENYSRYLSGRAEGEPPPTLFDYLAADGLLVVDESHVTIPQIGGMYRGDRSRKETLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    +VEQ++RPTGL+DP 
Sbjct: 364 DYGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGRYELEKSGNELVEQVVRPTGLIDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI + A++  R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 424 IEVRPVATQVDDLLSEIRIRAEKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARN++ K ILY D IT S+  AI ET RRR KQ   N++H I P+ + +KI +++     
Sbjct: 544 ARNLHGKAILYGDRITDSMAKAIGETERRRAKQQAFNEEHGIVPKGLNKKIGDLLKIGQP 603

Query: 735 -PILLEDAATTNISIDAQQL-SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                +      IS D      LS K+ +  ++ L ++M+  A +L FE+AA IRD+++ 
Sbjct: 604 VSGKGKAKGRGKISPDTDDYRKLSAKELENKIRELEEKMYQYARDLEFEQAANIRDQVQA 663

Query: 793 LK 794
           L+
Sbjct: 664 LR 665


>gi|281491028|ref|YP_003353008.1| excinuclease ABC subunit B [Lactococcus lactis subsp. lactis KF147]
 gi|281374786|gb|ADA64306.1| Excinuclease ABC, subunit B [Lactococcus lactis subsp. lactis
           KF147]
          Length = 692

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/684 (51%), Positives = 473/684 (69%), Gaps = 33/684 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQ  AIA+L+  I + EK Q+L G TG+GKT+TM++VI    +P +VMA
Sbjct: 11  FELVSKYEPAGDQGEAIAELVDNIENGEKAQILRGATGTGKTYTMSQVIARTGKPTLVMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 71  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCIYG+GS + Y   +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 131 SATSSLLERNDVIVVASVSCIYGLGSPKEYQDSVVSLRPGQEISRDQLLNDLVGIQFERN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 191 DIDFQRGCFRVRGDIVEVFPASRDEHAFRVEFFGDEIDRIREIEVLTGQVLGEVDHLAIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  ++  I+ EL+ +L     EG+LLEAQRLEQR  YD+EML   G C 
Sbjct: 251 PATHFMTNDDRMEESIAKIEAELEEQLKVFRSEGKLLEAQRLEQRTNYDIEMLREMGYCN 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR  GEPP TL ++ P+D ++ +DESH+T+ Q+ GMY GD  RK  L  Y
Sbjct: 311 GVENYSRHMDGREEGEPPYTLLDFFPDDFMIMIDESHMTMGQVKGMYNGDRARKEMLCNY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +E+EQ    IVEQIIRPTGL+DP VE
Sbjct: 371 GFRLPSALDNRPLKREEFESHVHQIVYVSATPGDYEMEQT-DTIVEQIIRPTGLLDPVVE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+  A++  R+ +T LTK+M+EDLT Y  E  I+V+YMHS++KTLE
Sbjct: 430 VRPMMGQIDDLVGEIHKRAEKNERVFVTTLTKKMSEDLTAYFKEMGIKVKYMHSDIKTLE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 490 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 549

Query: 681 NVNSKVILYAD-----------------------------TITKSIQLAIDETTRRREKQ 711
           N    VILY+D                              IT+S++ A+DET RRRE Q
Sbjct: 550 NSEGHVILYSDMAKALDENDPADKEILDSGYYTEYEGQKYKITRSMKHAMDETARRREIQ 609

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771
           + +N++H I PQ++K++I ++I      D+       +    +++KK+ KA +K L K+M
Sbjct: 610 MAYNEEHGITPQTIKKEIRDLIAITKKTDSGEIE---EVDASAMTKKERKALVKKLEKEM 666

Query: 772 HLAADNLNFEEAARIRDEIKRLKS 795
             AA  L+FE AA++RD +  L++
Sbjct: 667 QQAASALDFEGAAQLRDMVLELRA 690


>gi|241759550|ref|ZP_04757653.1| excinuclease ABC subunit B [Neisseria flavescens SK114]
 gi|241320107|gb|EER56468.1| excinuclease ABC subunit B [Neisseria flavescens SK114]
          Length = 677

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/667 (53%), Positives = 479/667 (71%), Gaps = 7/667 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPK 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           E+           +  +      +++     +  L K M  AA +L FEEAA +RD I+ 
Sbjct: 608 EEDGGKGRLKGKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRD 667

Query: 793 LKSSPYF 799
           +K +  F
Sbjct: 668 IKENLLF 674


>gi|118497766|ref|YP_898816.1| excinuclease ABC subunit B [Francisella tularensis subsp. novicida
           U112]
 gi|194323738|ref|ZP_03057514.1| excinuclease ABC, B subunit [Francisella tularensis subsp. novicida
           FTE]
 gi|118423672|gb|ABK90062.1| excinuclease ABC, subunit B [Francisella novicida U112]
 gi|194322102|gb|EDX19584.1| excinuclease ABC, B subunit [Francisella tularensis subsp. novicida
           FTE]
          Length = 668

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/667 (53%), Positives = 480/667 (71%), Gaps = 7/667 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + T Y P+GDQP AI  L+ GI++  + Q+LLGVTGSGKT+TMA VI+  Q+P +
Sbjct: 1   MNKFNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++
Sbjct: 61  ILAHNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY
Sbjct: 121 MRLSATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +K++++   
Sbjct: 181 SRNDMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+ ++HYV  +      ++ IK+ELK R+   EKEG+LLEAQR+EQR  YD+EM++  G
Sbjct: 241 TIFPSTHYVASKERKEIVIEEIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RK+ L
Sbjct: 301 YCTGIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   V+Q+IRPTGL+DP
Sbjct: 361 VNYGFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R    QVED   EIN A  +  R+L+T LTK+MAE+LTEYL E  + VRY+HS++ 
Sbjct: 420 EVFVRPVAIQVEDALSEINKAIAKEERVLITTLTKKMAENLTEYLSEHGVNVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--P 735
            ARN N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D  P
Sbjct: 540 VARNQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSP 599

Query: 736 ILLEDAATTNISIDAQQLSLSK----KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            + + A   N+ +    + +S      +    +K+L K+M   A  L FE+A  IRD+I 
Sbjct: 600 EMQKCAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKIT 659

Query: 792 RLKSSPY 798
            +K    
Sbjct: 660 EIKQKFI 666


>gi|225019978|ref|ZP_03709170.1| hypothetical protein CLOSTMETH_03939 [Clostridium methylpentosum
           DSM 5476]
 gi|224947342|gb|EEG28551.1| hypothetical protein CLOSTMETH_03939 [Clostridium methylpentosum
           DSM 5476]
          Length = 664

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/657 (53%), Positives = 464/657 (70%), Gaps = 1/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ+ + Y P+GDQP AIA+L++GI   +K Q LLGVTGSGKTFTMA +I  +Q+P +V+
Sbjct: 9   LFQLVSPYQPTGDQPEAIAKLVEGIKRGDKEQTLLGVTGSGKTFTMANIIAQVQKPTLVL 68

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQL SEF+ FFP +AVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++R
Sbjct: 69  AHNKTLAAQLCSEFREFFPTSAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLR 128

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER D I+V+SVSCIY +GS   Y  M++ L+ G    + ELLS L+  QY+R
Sbjct: 129 HSATCALAERRDVIIVASVSCIYSLGSPIDYRSMVISLREGMEKPRDELLSKLISIQYER 188

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   R   RV GD +EIFP++  D A RV  FG++I+ IS    LTG+    V  + I
Sbjct: 189 NDINFTRNKVRVRGDVVEIFPAYSSDTAIRVEFFGDEIDRISMINALTGEVKERVAHVAI 248

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y +SHY+ P   ++ A+  +++EL  R+        LLEAQR++QR  YDLEMLE  G C
Sbjct: 249 YPSSHYIVPPDKMHEAVVKLEDELNERVKYFTDNEMLLEAQRIKQRTMYDLEMLEEIGFC 308

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           + IENYSR L+GR PG  P TL ++ P+D LLFVDESHV +PQ+ GM+ GD  RK TL +
Sbjct: 309 KGIENYSRVLSGRKPGAVPYTLLDHFPDDFLLFVDESHVMLPQVRGMFFGDHARKKTLID 368

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS  DNRPL F+E+       + VSATPG +E E      VEQ+IRPTGL+DP +
Sbjct: 369 YGFRLPSAYDNRPLNFDEFYSKINQAVFVSATPGPFEKEHS-VQTVEQVIRPTGLLDPEI 427

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            ++    Q+ED+  EIN   ++G R+L+T LTK+MAEDLT++L    +RVRY+HS+V T+
Sbjct: 428 VVKPIEGQIEDLLSEINQRTEKGERVLVTTLTKKMAEDLTDFLEGMGVRVRYLHSDVDTI 487

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG+FDVL+GINLLREGLDIPE  LV ILDADKEGFLRS+TSLIQTIGRAA
Sbjct: 488 ERMEIIRDLRLGEFDVLIGINLLREGLDIPEVSLVCILDADKEGFLRSETSLIQTIGRAA 547

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN + +VI+YAD +T S++ AI ET RRRE Q+ +N++H I P+++ + + E+++     
Sbjct: 548 RNEHGQVIMYADEVTGSMERAITETMRRREIQMRYNEEHGIVPKTIHKNVHEILEISSKS 607

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             A        +Q  LS+++ +  +K L  +M  AA  L FE A  +RD I+ +K+S
Sbjct: 608 PDAEKGKGKGKKQKKLSREEKQELIKKLTVEMKNAAKLLEFEHAIYLRDRIEEIKNS 664


>gi|299143668|ref|ZP_07036748.1| excinuclease ABC subunit B [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518153|gb|EFI41892.1| excinuclease ABC subunit B [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 660

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/657 (54%), Positives = 474/657 (72%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  L+ GI+   K Q LLGVTGSGKTFTMA VIE +Q+P +V+A
Sbjct: 3   FKIHSSYVPTGDQPQAIDGLVDGINKNLKHQTLLGVTGSGKTFTMANVIERVQKPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL SEFK FFP NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++ID++RH
Sbjct: 63  HNKTLAYQLASEFKEFFPDNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G    Y  ++V L+ G   ++ E++  L++ QY R 
Sbjct: 123 SATMSLFERRDVIIVASVSCIYGLGDPIDYENLVVSLRPGMEKDRNEIMKRLIEIQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  +RGTFRV GD +EIFPS   + + RV  FG++I+ ISE   LTG+ +   + + IY
Sbjct: 183 DLNFVRGTFRVRGDILEIFPSWSSENSIRVEFFGDEIDRISEINALTGEVLGYRKHVAIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T    +  A+  I+EEL  R+ EL+ + +LLEAQR+EQR  YD+EML   G C 
Sbjct: 243 PASHFATTEQKVKRAIVTIEEELNERVKELKDQEKLLEAQRIEQRTRYDIEMLSEMGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y P+D L  +DESH T+PQI  MY GD  RK TL +Y
Sbjct: 303 GIENYSRHLSAREAGSRPYTLIDYFPKDFLTIIDESHATVPQIRAMYNGDRSRKQTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  +    I VSATPG +E E  +   VEQIIRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLKFEEFESIMNQCIYVSATPGPYEKEH-EQNKVEQIIRPTGLLDPVIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+ +EI    ++G R+L+T LTK+MAEDLT++  +  ++V YMHS+V T+E
Sbjct: 422 VRPTKYQIDDLINEIENVKERGERVLITTLTKKMAEDLTDHFKKIGMKVTYMHSDVDTIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGK+DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT GRAAR
Sbjct: 482 RMEIIRDLRLGKYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTAGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ KVI+YAD  TKS++  IDET RRR  Q ++NK++ I P+SV++ I EVI+  +  +
Sbjct: 542 NVDGKVIMYADFETKSMKYTIDETNRRRFIQDKYNKENGIIPKSVEKGIREVIEATVAAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
              +  SI+      S K+  A + +L+ +M+ +A+ L+FE AA IRD+I  L++  
Sbjct: 602 GVESYSSIN----EFSDKEILAMIDALKNEMYKSAEQLDFERAAEIRDKITELRAEM 654


>gi|325963172|ref|YP_004241078.1| excinuclease ABC subunit B [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469259|gb|ADX72944.1| Excinuclease ABC subunit B [Arthrobacter phenanthrenivorans Sphe3]
          Length = 698

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/687 (50%), Positives = 472/687 (68%), Gaps = 23/687 (3%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
            + ++ +  F++ +++ P+GDQPAAIA+L + I++ EK  +LLG TG+GK+ T A +IE 
Sbjct: 5   QDINRVVAPFEVISEFKPAGDQPAAIAELTERINNGEKDVVLLGATGTGKSATTAWLIEQ 64

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +QRP +VM  NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSI
Sbjct: 65  VQRPTLVMVQNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSI 124

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           NE+++R+RHSAT +LL R D IVV++VSCIYG+G+ E Y   +V L+ G  + +  LL  
Sbjct: 125 NEEVERLRHSATNALLTRRDVIVVATVSCIYGLGTPEEYIAGMVTLRKGQEMNRDALLRK 184

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
            V  QY R D+   RGTFRV GD++EI P + E++A R+  FG+++E I   +P+TG+ I
Sbjct: 185 FVSMQYARNDMDFHRGTFRVRGDTVEIIPMY-EELALRIEFFGDEVENIYTLHPVTGEVI 243

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
           R    + ++  SHYV     +  A+K I++EL  RL  LE + +L+EAQRL  R TYDLE
Sbjct: 244 REETEMYVFPASHYVAGPERMGRAIKSIEDELADRLAVLEGQNKLVEAQRLRMRTTYDLE 303

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M++  G C  IENYSR++ GR  G  P  L +Y P+D LL VDESHVTIPQI  MY GD 
Sbjct: 304 MMQQMGFCNGIENYSRHIDGRAGGTAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYEGDM 363

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK TL ++GFRLPS MDNRPL+++E+      T+ +SATPG +EL +  G  V+QIIRP
Sbjct: 364 SRKRTLVDHGFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGKYELGKADG-FVQQIIRP 422

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP V ++  + Q++D+  EI    ++  R+L+T LTKRMAEDLT+YL    I+V Y
Sbjct: 423 TGLIDPEVIVKPTKGQIDDLLGEIRTRVEKDERVLVTTLTKRMAEDLTDYLLGHGIKVEY 482

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS+V TL R+E++R+LR+G FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS TSL
Sbjct: 483 LHSDVDTLRRVELLRELRMGSFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSL 542

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARNV+ +V +YAD IT S+  AIDET RRR  Q+ +NK+H ++PQ +++KI +
Sbjct: 543 IQTIGRAARNVSGQVHMYADRITDSMANAIDETNRRRAIQVAYNKEHGVDPQPLRKKIAD 602

Query: 732 VIDPILLEDAATTNISIDAQ---------------------QLSLSKKKGKAHLKSLRKQ 770
           + D +  EDA T  +  + +                       +   +     ++ L +Q
Sbjct: 603 ITDQLAREDADTQELLNNNRLAKGGKRKAAAKGAAQVRSDGLAAAPAEDLVGLIEQLTEQ 662

Query: 771 MHLAADNLNFEEAARIRDEIKRLKSSP 797
           MH AA  L FE AARIRDE+  LK   
Sbjct: 663 MHGAAAELQFEVAARIRDEVSELKKEL 689


>gi|94499201|ref|ZP_01305739.1| excinuclease ABC subunit B [Oceanobacter sp. RED65]
 gi|94428833|gb|EAT13805.1| excinuclease ABC subunit B [Oceanobacter sp. RED65]
          Length = 676

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/669 (56%), Positives = 484/669 (72%), Gaps = 12/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y P+GDQP AI QL+ G+ S    Q LLGVTGSGKTFTMA VI   QRP IV+A
Sbjct: 6   FEVKSKYQPAGDQPKAIEQLMDGLESGLARQTLLGVTGSGKTFTMANVIAKAQRPTIVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 66  HNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER DCI+V++VS IYG+G   SY +M++ L  GD ++Q+ +L  L + QY R 
Sbjct: 126 SATKALMERRDCIIVATVSSIYGLGDPSSYLKMVLHLDRGDIIDQRGVLRRLAELQYTRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R T+RV GD I+IFP+  ED A RV +F  +IEE+S F PLTG+ +R V  I I+
Sbjct: 186 DMDFHRATYRVRGDVIDIFPAESEDEAVRVELFDEEIEELSIFDPLTGEILRKVPRITIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL   +  +K ELK RL +L+   +L+EAQRLEQR  YDLEM++  G C 
Sbjct: 246 PKSHYVTPRETLVDMIDEVKAELKERLTQLKDNNKLVEAQRLEQRTQYDLEMIQQLGYCT 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G  PPTLF+Y+P+D+L+F+DESHVTIPQ   MY+GD  RK TL E+
Sbjct: 306 GIENYSRYLSGRPQGAAPPTLFDYLPDDALMFIDESHVTIPQFGAMYKGDRSRKETLVEF 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++F+EW  + P TI VSATPG +E E  Q  +VEQ++RPTGLVDP VE
Sbjct: 366 GFRLPSALDNRPMKFDEWEAISPQTIFVSATPGKYEAE-YQDAVVEQVVRPTGLVDPIVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D   EI    ++G RIL+TV+TKRMAEDLT++L+E ++RVRY+HS++ T+E
Sbjct: 425 VRPATTQVDDALGEIRNRVEKGERILITVMTKRMAEDLTDFLFEHDVRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAI DADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAIFDADKEGFLRSDRSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--- 737
           NV  K ILYA+ IT S++ A++ET RRREKQ+  N++H I PQ +K+ + ++++  +   
Sbjct: 545 NVEGKAILYAERITDSMKRAMEETKRRREKQIAFNEEHGITPQGIKKSVEDILEGAVTPG 604

Query: 738 --------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                    +  A       A    L+       +  +   M  AA +L FEEAAR+RDE
Sbjct: 605 KKIGHGRNRKKVAEKGAGYTADMEHLNVNDLNKRITQVEDAMFKAAKDLKFEEAARLRDE 664

Query: 790 IKRLKSSPY 798
           +  LK    
Sbjct: 665 LHELKDQLI 673


>gi|227891173|ref|ZP_04008978.1| excinuclease ABC subunit B [Lactobacillus salivarius ATCC 11741]
 gi|227867047|gb|EEJ74468.1| excinuclease ABC subunit B [Lactobacillus salivarius ATCC 11741]
          Length = 671

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/657 (54%), Positives = 475/657 (72%), Gaps = 1/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L +GI   EK Q+L+G TG+GKTFT++ VI+ + +P +V+A
Sbjct: 15  FELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKNVNKPTLVLA 74

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 75  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 134

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y +  + L++G  +E+ +LL+ L+  Q++R 
Sbjct: 135 SATSSLLERNDVIVVASVSSIFGLGDPHEYREHTISLRVGQEIERNKLLNDLIDIQFERN 194

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E  PLTG+ I + E I I+
Sbjct: 195 DIDFQRGRFRVRGDVVEIFPASRDESALRVEFFGDEIDRIREIDPLTGETIADREHIAIF 254

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L TA++ I++EL+ R  EL+ EG+LLEAQRL+QR TYD+EML+  G C 
Sbjct: 255 PATHFMTNEERLGTAIEGIQQELEERTTELKNEGKLLEAQRLQQRTTYDIEMLKEMGYCS 314

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P TL ++ P+D L+ VDESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 315 GIENYSRHMDGRKPGEAPYTLLDFFPDDFLIVVDESHVTMPQVRGMYNGDRARKQMLVDY 374

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL  EE+       I +SATPG +E E+    +V+QIIRPTGL+DP +E
Sbjct: 375 GFRLPSALDNRPLTREEFEKHVNQIIYMSATPGPYEQEKT-SHVVQQIIRPTGLLDPEIE 433

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   +   R+ +T LTK+MAEDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 434 VRPIMGQMDDLVGEINKRVELNERVFVTTLTKKMAEDLTDYFKEMGIKVKYLHSDIKTLE 493

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RDLR+GKFDVLVGINLLREG+D+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 494 RTEIVRDLRMGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 553

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD +T S++ AI ET RRR  Q ++NK HNI P+++ + I   I      +
Sbjct: 554 NASGHVIMYADDVTPSMEAAIKETKRRRSIQEQYNKDHNIIPKTIIKPIRAAISISSKVN 613

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            + TNIS       +SKK+    + +L +QM  AA  L+FEEAA +RD +  LK+  
Sbjct: 614 KSDTNISDTVDFADMSKKEQLEMISNLEEQMREAAKKLDFEEAATLRDTVMELKAQI 670


>gi|227514395|ref|ZP_03944444.1| excision endonuclease subunit UvrB [Lactobacillus fermentum ATCC
           14931]
 gi|227087261|gb|EEI22573.1| excision endonuclease subunit UvrB [Lactobacillus fermentum ATCC
           14931]
          Length = 671

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/656 (52%), Positives = 464/656 (70%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P+GDQP AIA L KG+   +  Q+LLG TG+GKTFT++ VI+ + RP ++++
Sbjct: 10  FQLVSDYQPTGDQPEAIAALTKGVEEGDHAQILLGATGTGKTFTISNVIKNVNRPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEMKKFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ERND IVV+SVS I+G+GS   Y   +V L++G  + +  LL  LV+ Q+ R 
Sbjct: 130 SATSSLIERNDVIVVASVSSIFGLGSPAEYQNHVVSLRVGQEIPRNRLLRELVEIQFDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  E+ A RV  FG++I+ I E   LTG+ I + E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASREEKAIRVEFFGDEIDRIREVDALTGEVIGDREHVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +  KEG+LLEAQRL+QR TYD+EM+   G   
Sbjct: 250 PATHFLTSEDIMDLALPEIEADMKSQVAKFTKEGKLLEAQRLQQRTTYDIEMMREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+  R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRYMDRRKPGEPPFTLLDFFPKDFLLIVDESHQTMPQVRGMYNGDRARKQQLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL  +E+       I +SATPG +E  Q    +V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLTLKEFEGHVHQVIYMSATPGPYEEAQT-DRVVQQIIRPTGLLDPTIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+L+T LTK+M+EDL++YL +  ++V+Y+HS++KTLE
Sbjct: 429 VRPVMGQIDDLVGEINKRIEKNERVLVTTLTKKMSEDLSDYLKDLGLKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADT+T S++ AIDET RRR  Q  +NK+H I P+++ + I E I  +   +
Sbjct: 549 NANGSVIMYADTVTDSMRAAIDETKRRRTIQEAYNKEHGITPKTIVKPIQEAIKAVKPVE 608

Query: 741 AATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
               +   +       +L K+     +  L +QM  AA  L+FE+AA +RD +  L
Sbjct: 609 DEQADKGAEFTSKDFAALDKEAQAQMIAELTEQMKAAAKRLDFEQAATLRDTVMEL 664


>gi|256848093|ref|ZP_05553537.1| excinuclease ABC, B subunit [Lactobacillus coleohominis 101-4-CHN]
 gi|256715153|gb|EEU30130.1| excinuclease ABC, B subunit [Lactobacillus coleohominis 101-4-CHN]
          Length = 679

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/658 (52%), Positives = 466/658 (70%), Gaps = 4/658 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + +DY P+GDQP AIAQL KGI   +K Q+LLG TG+GKTFT++ VI  + +P ++
Sbjct: 8   KMFDLVSDYQPTGDQPEAIAQLTKGIKDGDKAQILLGATGTGKTFTISNVIANVNKPTLI 67

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           ++ NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++
Sbjct: 68  LSHNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDQL 127

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSAT SLLERND IVV+SVS I+G+GS   Y   ++ L++G  + +  LL  LV  Q+ 
Sbjct: 128 RHSATSSLLERNDVIVVASVSSIFGLGSPAEYQNHVISLRVGQEISRDRLLRELVNIQFD 187

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RG FRV GD +EIFP+  E+ A RV  FG++I+ I E   LTG+ + + E + 
Sbjct: 188 RNDIDFQRGRFRVRGDVVEIFPASREEKALRVEFFGDEIDRIREVDALTGEVLGDREHVS 247

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  +H++T   T+  A+  I+ ++K ++ +  KEG+LLEA+R++QR TYD+EM+   G 
Sbjct: 248 IFPATHFLTTEETMKVALPEIEADMKKQVEQFTKEGKLLEAERIQQRTTYDIEMMREMGY 307

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
              IENYSRY+  R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L 
Sbjct: 308 TNGIENYSRYMDRRKPGEPPFTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKKQLI 367

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL+ +E+       I +SATPG +E  Q    +V+QIIRPTGL+DP 
Sbjct: 368 DYGFRLPSALDNRPLKLDEFEQHVNQVIYMSATPGPYEQAQT-DHVVQQIIRPTGLLDPT 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    Q++D+  EIN   ++  R+L+T LTK+M+EDL++YL +  ++V+Y+HS++KT
Sbjct: 427 IEVRPVMGQIDDLVGEINKRIEKHERVLITTLTKKMSEDLSDYLKDLGLKVKYLHSDIKT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER +IIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 487 LERTQIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNERSLIQTIGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN +  VI+YADTIT S++ AIDET RRR  Q ++N++H I P+++ + I E I  +  
Sbjct: 547 ARNEHGAVIMYADTITDSMKAAIDETKRRRTIQEKYNQEHGITPKTIIKPIQEAISAVKP 606

Query: 739 EDAATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
            +      S +        LS K+ +  L  L +QM  AA  L+FE+AA +RD +  L
Sbjct: 607 AEDQDDQQSAEFTAQDFAKLSAKEQQQMLDELTEQMRSAAKRLDFEQAATLRDTVMEL 664


>gi|114563341|ref|YP_750854.1| excinuclease ABC subunit B [Shewanella frigidimarina NCIMB 400]
 gi|114334634|gb|ABI72016.1| Excinuclease ABC subunit B [Shewanella frigidimarina NCIMB 400]
          Length = 673

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/663 (54%), Positives = 475/663 (71%), Gaps = 7/663 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F +++ + P+GDQP AI +L+ G+ S    Q LLGVTGSGKT+T+A VI+ M RP I+
Sbjct: 4   SVFSLESKFEPAGDQPTAIKKLVDGLESGVASQTLLGVTGSGKTYTIANVIKQMGRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP ++T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QYK
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYMKMLLHLRQGDFMGQRDILIRLSELQYK 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGT+RV G+ I+IFP+  E  A R+ +F ++IE +SEF PLTGQ  + +    
Sbjct: 184 RNDIELQRGTYRVRGEVIDIFPAESEREAIRIELFDDEIERLSEFDPLTGQINKRIARAT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  A + IKEEL+ R   L    +L+EAQR+ +R+ YD+EM+   G 
Sbjct: 244 IYPKTHYVTPREKILAATEEIKEELRERRQYLLDNNKLIEAQRITERVQYDIEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR+ G+ PPTL +Y+P D LL +DESHVT+PQI  MY+GD  RK  L 
Sbjct: 304 CSGIENYSRYLSGRSSGDGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKMNLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL FEE+  L P TI VSATP  +ELE+  G I EQ++RPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLMFEEFERLMPQTIFVSATPSLYELEKSTGEIAEQVVRPTGLLDPV 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    QV+D+  EI+       R+L+T LTKRM+EDL+EYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVGIQVDDLLSEIHKRVAVNERVLVTTLTKRMSEDLSEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVL+GINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGRFDVLIGINLLREGLDLPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---- 734
           ARNVN KVILYAD IT S+  A+ ET RRREKQ +HN K  I P+ V + I +V+D    
Sbjct: 544 ARNVNGKVILYADRITNSMAKAMGETERRREKQHQHNLKLGIVPRGVVKSITDVMDVGDT 603

Query: 735 ---PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                  ++ +      + +    S       +  L KQMH  A NL FE+AA +RD++K
Sbjct: 604 NFSKGTRKNHSKFAEVAEERAKYTSIADLSHQIDKLEKQMHEHAKNLEFEQAAAVRDDVK 663

Query: 792 RLK 794
            L+
Sbjct: 664 HLR 666


>gi|134302179|ref|YP_001122148.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049956|gb|ABO47027.1| excinuclease ABC, B subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 668

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/667 (53%), Positives = 479/667 (71%), Gaps = 7/667 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + T Y P+GDQP AI  L+ GI++  + Q+LLGVTGSGKT+TMA VI+  Q+P +
Sbjct: 1   MNKFNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++
Sbjct: 61  ILAHNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY
Sbjct: 121 MRLSATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +K++++   
Sbjct: 181 SRNDMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+ ++HYV  +      ++ IK+ELK R+   EKEG+LLEAQR+EQR  YD+EM++  G
Sbjct: 241 TIFPSTHYVASKERKEIVIEDIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RK+ L
Sbjct: 301 YCTGIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   V+Q+IRPTGL+DP
Sbjct: 361 VNYGFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R    QVED   EIN A  +  R+L+T LTK+M E+LTEYL E  + VRY+HS++ 
Sbjct: 420 EVFVRPVAIQVEDALSEINKAIAKEERVLITTLTKKMVENLTEYLSEHGVNVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--P 735
            ARN N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D  P
Sbjct: 540 VARNQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSP 599

Query: 736 ILLEDAATTNISIDAQQLSLSK----KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            + + A   N+ +    + +S      +    +K+L K+M   A  L FE+A  IRD+I 
Sbjct: 600 EMQKRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKIT 659

Query: 792 RLKSSPY 798
            +K    
Sbjct: 660 EIKQKFI 666


>gi|254520577|ref|ZP_05132633.1| excinuclease ABC subunit B [Clostridium sp. 7_2_43FAA]
 gi|226914326|gb|EEH99527.1| excinuclease ABC subunit B [Clostridium sp. 7_2_43FAA]
          Length = 656

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/659 (54%), Positives = 469/659 (71%), Gaps = 3/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++++ + P+GDQP AI  L+  I   +K Q LLGVTGSGKT+TMA +IE +Q+P I
Sbjct: 1   MPQFKIESKFKPTGDQPQAIESLVNSIERGDKGQTLLGVTGSGKTYTMANIIERVQKPTI 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL SEFK FFP+N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID+
Sbjct: 61  ILAHNKTLAAQLCSEFKEFFPNNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +LLER D I+V+SVSCIYG+G+ E Y ++ + L+ G   E+ E++  L++ QY
Sbjct: 121 LRHSATSALLERRDVIIVASVSCIYGLGNPEEYKKLTISLRTGMEKERDEIIRKLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RG+FRV GDS++I P+   +   RV  FG++IE I EF  LTG  +     +
Sbjct: 181 ERNDIDFARGSFRVRGDSLDIIPASSSNKGIRVEFFGDEIERIREFDVLTGNILGERNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I   SH+ T    L  A+K I++EL+ RL EL  + +LLEAQRL QR  YD+EM+   G
Sbjct: 241 SISPASHFATSPEVLEKAIKSIEDELEDRLRELNSQEKLLEAQRLRQRTNYDIEMIREMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L GR+PG PP TL +Y P+D L+F+DESHVT+PQ   MY GD  RK TL
Sbjct: 301 YCSGIENYSRILDGRDPGTPPQTLLDYFPDDYLMFIDESHVTLPQCRAMYAGDRSRKDTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP   DNRPL+F E+       + VSATP  +E++     I EQ+IRPTGL+DP
Sbjct: 361 VEYGFRLPCAYDNRPLKFPEFEEKMNQVVFVSATPSQYEIDHSTN-IAEQVIRPTGLIDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR  + Q++D+Y EI    ++G R L+T LTKRMAEDLT+YL +  I+  YMHS+++
Sbjct: 420 VIEIRPVQGQIDDLYAEIKKTTEKGFRTLITTLTKRMAEDLTKYLKDLGIKTTYMHSDIE 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++IIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMKIIRDLRLGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+YAD ITKS+  AI ET RRRE Q+++N++H I PQ++ +++ EVI+   
Sbjct: 540 AARNSESKVIMYADNITKSMNKAIKETERRREIQIKYNEEHGITPQTIIKEVREVIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + +         A+++S   KK         ++M  AA NL FE AA +RD I  LKS 
Sbjct: 600 VSEEKVEYKVEGAKKVSEKDKKKLIK--KYTEEMMEAAKNLQFERAAELRDIINDLKSK 656


>gi|225874345|ref|YP_002755804.1| excinuclease ABC, B subunit [Acidobacterium capsulatum ATCC 51196]
 gi|225794026|gb|ACO34116.1| excinuclease ABC, B subunit [Acidobacterium capsulatum ATCC 51196]
          Length = 664

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/659 (54%), Positives = 473/659 (71%), Gaps = 1/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y P GDQ  AI +L+ G+ S E+ Q+LLGVTGSGKTFTMAKVIE + RPA+++A
Sbjct: 5   FQLVSEYQPKGDQVRAIRELVGGVASGEQHQVLLGVTGSGKTFTMAKVIEELNRPALILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+ EFK FFP+NAVEYFVSYYDYYQPEAY+P  D YIEKE++INE++D++R 
Sbjct: 65  HNKTLAAQLFHEFKQFFPNNAVEYFVSYYDYYQPEAYIPAGDLYIEKEATINEELDKLRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER DCI+V+SVSCIYG+GS E+Y  M++ L+ G  + ++++   LV+  Y+R 
Sbjct: 125 SATRSLFERRDCIIVASVSCIYGLGSPEAYYGMLLLLEKGQKIRREDITRRLVEILYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD IE++P++ ++ A+R+ +FG++I+ +++  PL G   +    + IY
Sbjct: 185 DADFRRGTFRVRGDVIEVYPTY-DENAFRIELFGDEIDSLAQIDPLFGTVKQKYSRLPIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV       +AM  I EEL     ELE +GR++EAQR+ QR  +DLEM+++ G C 
Sbjct: 244 PKSHYVVMPERKKSAMDSILEELGTWEKELEAQGRMVEAQRVHQRTRFDLEMIKSMGYCH 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ +GR PGEPPPTL +Y P D LLF+DESHVT+PQ+ GM+ GD  RK  L +Y
Sbjct: 304 GIENYSRHFSGRLPGEPPPTLLDYFPRDFLLFIDESHVTVPQLHGMWHGDRSRKQNLVDY 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL+FEE+       + VSATPG++EL +  G++VEQIIRPTGL+DP VE
Sbjct: 364 GFRLPSAMDNRPLKFEEFEARTHQLVYVSATPGAYELTKSAGVVVEQIIRPTGLIDPEVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  R Q++D+  EI     +G R+L+T LTKRMAEDL+ Y  E  +R RYMHSE++TLE
Sbjct: 424 IRPIRGQIDDLLAEIRDRVAKGERVLVTTLTKRMAEDLSGYYSEVGVRCRYMHSEIETLE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++++RDLR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 484 RVKLLRDLRKGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSAGSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN + ILYAD IT S++ A+DET RRR  Q  +N++H I P S+       +  IL  +
Sbjct: 544 NVNGRAILYADRITDSMRQAMDETDRRRTVQRAYNEEHGITPTSIIRSADMSLAKILKAE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
            A      +      S+++   ++  L  +M  AA    FE+AA++RD IK L+S  + 
Sbjct: 604 YADLEEESEEMPEFSSQEQLDTYILKLETEMREAAKKFEFEKAAKLRDTIKDLRSKEFL 662


>gi|121604469|ref|YP_981798.1| excinuclease ABC subunit B [Polaromonas naphthalenivorans CJ2]
 gi|120593438|gb|ABM36877.1| Excinuclease ABC subunit B [Polaromonas naphthalenivorans CJ2]
          Length = 702

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/670 (54%), Positives = 482/670 (71%), Gaps = 4/670 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   Y P+GDQP AIA+L++G+   E  Q LLGVTGSGKTFTMA VI  + RPAIV
Sbjct: 26  SPFELFQPYLPAGDQPQAIAKLVEGVRDGEAFQTLLGVTGSGKTFTMANVIARLGRPAIV 85

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++M
Sbjct: 86  FAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQM 145

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+S+LER D I+V++VS IYGIG+ E Y+QM    + GD + Q+++++ L++ QY 
Sbjct: 146 RLSATKSVLERRDTIIVATVSAIYGIGAPEDYTQMRFIARTGDKMGQRDVIARLIRMQYS 205

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +    RGTFRV GD I+IFP+   ++A R+ +F ++IE +  F PLTG+  + +    
Sbjct: 206 RNEQDFSRGTFRVRGDVIDIFPAEHSELAIRIELFDDEIESLQLFDPLTGRIRQKIPRFV 265

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYVTPR  +  A++ IK EL  R+ +   EG+L+EAQR+EQR  +DLEML   G 
Sbjct: 266 VYPKSHYVTPRDKVLAAVETIKLELSERVGQFIAEGKLVEAQRIEQRTRFDLEMLGEIGH 325

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENY+R+L+   PG  P TL +Y+P+DS++F+DESHV I Q++ MY GD  RK TL 
Sbjct: 326 CKGIENYTRHLSASAPGSAPSTLCDYLPKDSVMFLDESHVMIGQLNAMYNGDRARKTTLV 385

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+       I VSATP ++E E   G +VEQ++RPTGLVDP 
Sbjct: 386 EYGFRLPSALDNRPLKFEEFESKVRQAIFVSATPAAYENEHA-GQVVEQLVRPTGLVDPQ 444

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R A  QV+DV  EI +  +   R+L+T LTKRMAE LT+YL E  ++VRY+HS+V+T
Sbjct: 445 VEVRPATHQVDDVLQEIRIRVEINERVLITTLTKRMAEQLTDYLTENGVKVRYLHSDVET 504

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 505 VERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 564

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N + ILYAD +T S+++A+ ET RRR KQL  N  H I P+S+ ++I ++ID +  
Sbjct: 565 ARNLNGRAILYADRVTDSMKMAMGETERRRNKQLAFNTLHGITPRSIVKRIKDLIDGVYS 624

Query: 739 EDAATTNISIDAQQ---LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           E +      ++ Q+     +S+K     +K L KQM   A NL FE+AAR+RD++  LK 
Sbjct: 625 EKSGKEAEKLEMQKALVEDMSEKDIAREIKRLEKQMVEHAKNLEFEKAARVRDQLHVLKQ 684

Query: 796 SPYFQGLDDS 805
             +     D+
Sbjct: 685 QAFGAPGSDN 694


>gi|332184269|gb|AEE26523.1| Excinuclease ABC subunit B [Francisella cf. novicida 3523]
          Length = 668

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/667 (53%), Positives = 480/667 (71%), Gaps = 7/667 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + T Y P+GDQP AI  L++G+++  + Q+LLGVTGSGKT+TMA VI+  Q+P +
Sbjct: 1   MNKFNLVTKYAPAGDQPKAIKSLVEGVNNGLQHQVLLGVTGSGKTYTMANVIQQTQKPCL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++
Sbjct: 61  IVAHNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY
Sbjct: 121 MRLSATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +KI+++   
Sbjct: 181 SRNDMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISIIDSLTSKKIKSLHRA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+ ++HYV  +      ++ IK ELK R+   EKEG+LLEAQR+EQR  YD+EM++  G
Sbjct: 241 TIFPSTHYVASKERKEIVIEEIKAELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RKA L
Sbjct: 301 YCTGIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKANL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   VEQ+IRPTGL+DP
Sbjct: 361 VNYGFRLPSALDNRPLKFNEFEKLLPQTIYVSATPANYELEKSQN-TVEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R    QVED   EIN A  +  RIL+T LTK+MAE+LTEYL E  + VRY+HS++ 
Sbjct: 420 EVFVRPVAIQVEDALSEINRAIAKEERILITTLTKKMAENLTEYLSEHGVNVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--P 735
            ARN N + ILYAD +TKS++ A+DET RRR+ Q E+NKKHNI P+++ + I +++D  P
Sbjct: 540 VARNQNGRAILYADVVTKSMKKAMDETLRRRQLQDEYNKKHNITPKTIIKNIDDMLDSSP 599

Query: 736 ILLEDAATTNISIDAQQLSLSK----KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            + + A   N+ +    + +S      +    +K+L K+M   A  L FE+A  IRD+I 
Sbjct: 600 EMQKRAYKNNLRLKVDDVDVSAILGMTEAAKVIKALEKRMRAYAKELEFEKATTIRDKIT 659

Query: 792 RLKSSPY 798
            +K    
Sbjct: 660 EIKQKFI 666


>gi|304413710|ref|ZP_07395154.1| DNA damage recognition component and excinulease of nucleotide
           excision repair [Candidatus Regiella insecticola LSR1]
 gi|304283801|gb|EFL92195.1| DNA damage recognition component and excinulease of nucleotide
           excision repair [Candidatus Regiella insecticola LSR1]
          Length = 678

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/664 (54%), Positives = 469/664 (70%), Gaps = 6/664 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   + PSGDQP+AI QL +G+ +    Q LLGVTGSGKTFT+A VI  MQ+P +++A
Sbjct: 12  FQLHASFEPSGDQPSAIFQLKEGLENGLAHQTLLGVTGSGKTFTVANVIADMQKPTLILA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+INE I++MR 
Sbjct: 72  PNKTLAAQLYGEMKVFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAINEHIEQMRL 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D IVV+SVS IYG+G  + Y +MI+ L  G  ++Q+E+L  L + QYKR 
Sbjct: 132 SATKALLERQDVIVVASVSAIYGLGDPDRYLKMILHLTNGMIIDQREILRCLAELQYKRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+     A RV +F N++E +S F PLTGQ ++ +    IY
Sbjct: 192 DQVFQRGTFRVRGEVIDIFPAESSKQAVRVELFDNEVERLSLFDPLTGQFLQQITRCTIY 251

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY TPR  +   ++ IK EL+ R   L    +LLE QRL QR  +D+EM+   G C 
Sbjct: 252 PKTHYATPRECILQMIEEIKVELQQRRTLLLANNKLLEEQRLTQRTQFDIEMINELGYCS 311

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  G+PPPTLF+Y+P + LL VDESHVTIPQI  MY+GD  RK  L EY
Sbjct: 312 GIENYSRYLSGRAAGDPPPTLFDYLPANGLLIVDESHVTIPQIGAMYKGDSSRKENLVEY 371

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATP  +EL++  G ++EQ++RPTGL+DP +E
Sbjct: 372 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPNQYELDKSSGKVIEQLVRPTGLLDPVIE 431

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D+  EI        RIL+T LTKRMAEDLT+YL E+  RVRY+HS++ T+E
Sbjct: 432 VRPATIQVDDLLSEIRQRVLINERILVTTLTKRMAEDLTQYLQEQGERVRYLHSDIDTVE 491

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG FD+LVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 492 RIEIIRDLRLGHFDILVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 551

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           N+N K ILY D IT S++ AI ET RRR KQ  +N++  I PQ + +KI +++       
Sbjct: 552 NLNGKAILYGDKITSSMEKAIQETERRRAKQKAYNEEKGIIPQGLNKKIEDILQLGQPYS 611

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               + +    +       +L+ +  +  +  L  +M++ A NL FE+AA +RD++ R++
Sbjct: 612 SGKEKKSGLKAMEAANHYQALTPQALEQKIHELEAKMYICAQNLEFEQAASLRDQVHRMR 671

Query: 795 SSPY 798
               
Sbjct: 672 EQFI 675


>gi|326382689|ref|ZP_08204380.1| excinuclease ABC subunit B [Gordonia neofelifaecis NRRL B-59395]
 gi|326198808|gb|EGD55991.1| excinuclease ABC subunit B [Gordonia neofelifaecis NRRL B-59395]
          Length = 717

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/702 (49%), Positives = 482/702 (68%), Gaps = 28/702 (3%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
               I    +  + F++ ++Y P+GDQP AIA L + +++ E+  +LLG TG+GK+ T A
Sbjct: 14  EFRPIGEIERKDSRFEVVSEYEPAGDQPTAIADLERRLNTGERDIVLLGATGTGKSATTA 73

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            +IE +QRP +VMAPNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIE
Sbjct: 74  WLIEKVQRPTLVMAPNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIE 133

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+SSIN+ ++R+RH+AT SLL R D +VV+SVSCIYG+G+ +SY    V+L +G ++++ 
Sbjct: 134 KDSSINDDVERLRHAATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVELSVGQTIDRD 193

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
            LL  LV  QY R D+   RG FRV GD++EI PS+ E++A R+  FG++++ +   +PL
Sbjct: 194 ALLRLLVDVQYTRNDVSFTRGGFRVRGDTVEIIPSY-EELAVRIEFFGDEVDSLYYLHPL 252

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG  +R V++++I+  +HYV     +  AM+ I++EL+ RL +LE +G+LLEAQRL  R 
Sbjct: 253 TGDVVRKVDSLRIFPATHYVAGPERMAVAMESIEKELEERLADLEAKGKLLEAQRLRMRT 312

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
           TYDLEM+   G C  IENYSR++ GR PG  P TL +Y P+D LL +DESHVT+PQI  M
Sbjct: 313 TYDLEMMRQVGFCSGIENYSRHIDGRGPGTAPATLLDYFPDDFLLVIDESHVTVPQIGAM 372

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           Y GD  RK  L EYGFRLPS +DNRPL ++E+      T+ +SATPG++EL Q  G  VE
Sbjct: 373 YEGDMSRKRNLVEYGFRLPSAVDNRPLTWDEFVDRVGQTVYLSATPGAYELGQSGGEFVE 432

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q+IRPTGL+DP + ++  + Q++D+  EI    ++  RIL+T LTK+MAEDLT+YL E  
Sbjct: 433 QVIRPTGLLDPQIVVKPTKGQIDDLVHEIRERTERDERILVTTLTKKMAEDLTDYLLELG 492

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           IRVRY+HSEV TL R+E++R LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLR
Sbjct: 493 IRVRYLHSEVDTLRRVELLRQLRSGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLR 552

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S TSLIQTIGRAARNV+ +V +YAD IT S+  AI+ET RRR KQ+ +N++  ++PQ ++
Sbjct: 553 STTSLIQTIGRAARNVSGEVHMYADKITDSMANAIEETDRRRAKQIAYNEEKGVDPQPLR 612

Query: 727 EKIMEVIDPILLEDAATTNISIDAQQLS-------------------------LSKKKGK 761
           +KI +++D +  E   +  I    +  S                         + + +  
Sbjct: 613 KKIADILDQVYAEADDSVEIGGSGRNASRGRRAQGEVSKVASSGVIENRDTSGMPRAELA 672

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
             ++ L  QM  AA +L FE AAR+RDEI  LK     +G+D
Sbjct: 673 DLVQQLTDQMMNAARDLQFELAARLRDEIADLKKE--LRGMD 712


>gi|238853234|ref|ZP_04643619.1| excinuclease ABC subunit B [Lactobacillus gasseri 202-4]
 gi|238834118|gb|EEQ26370.1| excinuclease ABC subunit B [Lactobacillus gasseri 202-4]
          Length = 671

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/658 (52%), Positives = 456/658 (69%), Gaps = 2/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G    EK Q+L G TG+GKTFTMA VI  + +P +V++
Sbjct: 10  FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
             T  L+ RND IVV+SVSCIYG+G    Y+  +V +  G  + +  LL  LV  QY R 
Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSISEGQEISRDVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A+RV  FG++I+ I E   LTG+ I   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVDSLTGEVIGEREQVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFVTNEQIMQRALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G+PP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL Q     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQT-DHKVEQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIKGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   L+QTIGRAAR
Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD+IT S++ AID T RRR  Q++ NK+H I P+++ + I +VI      D
Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608

Query: 741 AATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                 S  D     L+KK+ +  +K+L  QM  AA  L+FEEAA +RD I  L+   
Sbjct: 609 EKENKESFADLNFDELTKKQKQTMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLQKQV 666


>gi|184154829|ref|YP_001843169.1| excinuclease ABC subunit B [Lactobacillus fermentum IFO 3956]
 gi|183226173|dbj|BAG26689.1| excinuclease ABC subunit B [Lactobacillus fermentum IFO 3956]
          Length = 671

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/656 (52%), Positives = 464/656 (70%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P+GDQP AIA L KG+   +  Q+LLG TG+GKTFT++ VI+ + RP ++++
Sbjct: 10  FQLVSDYQPTGDQPEAIAALTKGVEEGDHAQILLGATGTGKTFTISNVIKNVNRPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEMKKFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ERND IVV+SVS I+G+GS   Y   +V L++G  + +  LL  LV+ Q+ R 
Sbjct: 130 SATSSLIERNDVIVVASVSSIFGLGSPAEYQNHVVSLRVGQEIPRNRLLRELVEIQFDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  E+ A RV  FG++I+ I E   LTG+ I + E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASREEKAIRVEFFGDEIDRIREVDALTGEVIGDREHVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +  KEG+LLEAQRL+QR TYD+EM+   G   
Sbjct: 250 PATHFLTSEDIMDLALPEIEADMKSQVAKFTKEGKLLEAQRLQQRTTYDIEMMREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+  R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRYMDRRKPGEPPFTLLDFFPKDFLLIVDESHQTMPQVRGMYNGDRARKQQLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL  +E+       I +SATPG +E  Q    +V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLTLKEFEGHVHQVIYMSATPGPYEEAQT-DRVVQQIIRPTGLLDPTIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+L+T LTK+M+EDL++YL +  ++V+Y+HS++KTLE
Sbjct: 429 VRPVMGQIDDLVGEINKRIEKNERVLVTTLTKKMSEDLSDYLKDLGLKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N N  VI+YADT+T S++ AIDET RRR  Q  +NK+H I P+++ + I E I    P+ 
Sbjct: 549 NANGSVIMYADTVTDSMRAAIDETKRRRTIQEAYNKEHGITPKTIVKPIQEAITAVKPVE 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
            E A            +L K+     +  L +QM  AA  L+FE+AA +RD +  L
Sbjct: 609 DEQADKGAEFTSKDFAALDKEAQAQIIAELTEQMKAAAKRLDFEQAATLRDTVMEL 664


>gi|260663142|ref|ZP_05864034.1| excinuclease ABC, B subunit [Lactobacillus fermentum 28-3-CHN]
 gi|260552334|gb|EEX25385.1| excinuclease ABC, B subunit [Lactobacillus fermentum 28-3-CHN]
          Length = 671

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/656 (52%), Positives = 464/656 (70%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P+GDQP AIA L KG+   +  Q+LLG TG+GKTFT++ VI+ + RP ++++
Sbjct: 10  FQLVSDYQPTGDQPEAIAALTKGVEEGDHAQILLGATGTGKTFTISNVIKNVNRPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEMKKFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ERND IVV+SVS I+G+GS   Y   +V L++G  + +  LL  LV+ Q+ R 
Sbjct: 130 SATSSLIERNDVIVVASVSSIFGLGSPAEYQNHVVSLRVGQEIPRNRLLRELVEIQFDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  E+ A RV  FG++I+ I E   LTG+ I + E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASREEKAIRVEFFGDEIDRIREVDALTGEVIGDREHVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +  KEG+LLEAQRL+QR TYD+EM+   G   
Sbjct: 250 PATHFLTSEDIMDLALPEIEADMKSQVAKFTKEGKLLEAQRLQQRTTYDIEMMREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+  R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRYMDRRKPGEPPFTLLDFFPKDFLLIVDESHQTMPQVRGMYNGDRARKQQLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL  +E+       I +SATPG +E  Q    +V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLTLKEFEGHVHQVIYMSATPGPYEEAQT-DRVVQQIIRPTGLLDPTIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+L+T LTK+M+EDL++YL +  ++V+Y+HS++KTLE
Sbjct: 429 VRPVMGQIDDLVGEINKRIEKNERVLVTTLTKKMSEDLSDYLKDLGLKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADT+T S++ AIDET RRR  Q  +NK+H I P+++ + I E I  +   +
Sbjct: 549 NANGSVIMYADTVTDSMRAAIDETKRRRTIQEAYNKEHGITPKTIIKPIQEAIKAVKPVE 608

Query: 741 AATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
               +   +       +L K+     +  L +QM  AA  L+FE+AA +RD +  L
Sbjct: 609 DEQADKGAEFTSKDFAALDKEAQAQMIAELTEQMKAAAKRLDFEQAATLRDTVMEL 664


>gi|227889627|ref|ZP_04007432.1| excision endonuclease subunit UvrB [Lactobacillus johnsonii ATCC
           33200]
 gi|227849770|gb|EEJ59856.1| excision endonuclease subunit UvrB [Lactobacillus johnsonii ATCC
           33200]
          Length = 671

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/658 (52%), Positives = 456/658 (69%), Gaps = 2/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G    EK Q+L G TG+GKTFTMA VI  + +P +V++
Sbjct: 10  FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
             T  L+ RND IVV+SVSCIYG+G    Y+  +V L  G    +  LL  LV  QY R 
Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSLSEGQEFSRDVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A+RV  FG++I+ I E   LTG+ I   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVDSLTGEVIGEREQVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFVTNEQIMERALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G+PP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL Q     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQT-DHKVEQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  E+N   ++  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIKGQIDDLVGEVNKRIERNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   L+QTIGRAAR
Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD+IT S++ AID T RRR  Q++ NK+H I P+++ + I +VI      D
Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608

Query: 741 AATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                 S  D     L+KK+ +  +K+L  QM  AA  L+FEEAA +RD I  LK   
Sbjct: 609 DKENKESFADLNFDELTKKQKQNMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLKKQV 666


>gi|160872333|ref|ZP_02062465.1| excinuclease ABC, B subunit [Rickettsiella grylli]
 gi|159121132|gb|EDP46470.1| excinuclease ABC, B subunit [Rickettsiella grylli]
          Length = 669

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/668 (54%), Positives = 489/668 (73%), Gaps = 8/668 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI  L+KG+ S    Q LLGVTGSGKTF++A VI+ +QRP +++A
Sbjct: 5   FELISNFKPAGDQPTAIKALVKGLQSGLAYQTLLGVTGSGKTFSIAHVIQKIQRPVLILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E ++FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+++INE I++MR 
Sbjct: 65  PNKTLAAQLYGEMRSFFPHNAVEYFVSYYDYYQPEAYVPTTDTYIEKDAAINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SLLER D I+V++VS IYG+G   +Y  M++ ++ GD + Q+ +L  L + QY R 
Sbjct: 125 SATKSLLERRDVIIVATVSAIYGLGDPNTYVDMMLHIRRGDEICQRFILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R T+RV GD I+++P+   + A R+ +  + IE +S F PLTG+  R V  + IY
Sbjct: 185 DTDFRRATYRVRGDVIDVYPAESAEEAVRIELLDDTIEHLSFFDPLTGELYRRVPRLTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  + +A++ I+ ELK RL +L+   +L+E QRLEQR  +D+EML   G C 
Sbjct: 245 PKTHYVTPRDKILSAVESIQRELKERLAQLQSAHKLIEFQRLEQRTRFDIEMLLELGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR+ G+PPPTL +Y+P+D+LL +DESHVT+PQ+S MYRGD  RK TL  Y
Sbjct: 305 GIENYSRYLSGRDAGQPPPTLMDYLPKDALLVIDESHVTVPQLSAMYRGDRSRKETLVAY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E++     T+ +SATP ++ELE+  G IVEQ+IRPTGLVDP +E
Sbjct: 365 GFRLPSALDNRPLQFQEFSDFAFQTVYISATPSTYELERS-GAIVEQVIRPTGLVDPVIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI+    +  R+L+T LTKR++EDLTEYL E N++VRY+HS++ T+E
Sbjct: 424 VRPQATQVDDLLSEIHYCVAKNERVLVTTLTKRLSEDLTEYLAEHNVKVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RVEIIRDLRLGQFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++  + ILYAD IT S+Q AIDET RRR KQL  NKKH+I P+ + + + ++++    + 
Sbjct: 544 HIQGRAILYADKITGSMQKAIDETERRRNKQLAFNKKHHITPKGIAKAVHDILEGAKSDM 603

Query: 741 AATTN-----ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +             A   +LS ++   H+K L ++M   A NL FEEAA  RD++K+LK 
Sbjct: 604 STHKQRVLNVAEARAYYATLSPEECAKHIKQLEREMFHYAKNLQFEEAAETRDKLKKLKE 663

Query: 796 SPYFQGLD 803
                G+D
Sbjct: 664 K--IMGID 669


>gi|311110421|ref|ZP_07711818.1| excinuclease ABC subunit B [Lactobacillus gasseri MV-22]
 gi|311065575|gb|EFQ45915.1| excinuclease ABC subunit B [Lactobacillus gasseri MV-22]
          Length = 671

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/658 (52%), Positives = 456/658 (69%), Gaps = 2/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G    EK Q+L G TG+GKTFTMA VI  + +P +V++
Sbjct: 10  FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
             T  L+ RND IVV+SVSCIYG+G    Y+  +V +  G  + +  LL  LV  QY R 
Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSISGGQEISRDVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A+RV  FG++I+ I E   LTG+ I   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVNSLTGEVIGEREQVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFVTNEQIMQRALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G+PP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL Q     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQT-DHKVEQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIKGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   L+QTIGRAAR
Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD+IT S++ AID T RRR  Q++ NK+H I P+++ + I +VI      D
Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608

Query: 741 AATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                 S  D     L+KK+ +  +K+L  QM  AA  L+FEEAA +RD I  L+   
Sbjct: 609 EKENKESFADLNFDELTKKQKQTMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLQKQV 666


>gi|325125372|gb|ADY84702.1| UvrB [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 680

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/665 (51%), Positives = 470/665 (70%), Gaps = 2/665 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +D   F++ + Y P+GDQ  AI QL  G  + +K Q+L G TG+GKT+TMA VI  M 
Sbjct: 3   KRQDNNKFELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAKMN 62

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P +V+  NK L  QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN+
Sbjct: 63  KPTLVITHNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASIND 122

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +ID++RH+AT +L+ RND IVV+SVSCIYG+G    Y   ++ +  G   E+  LL  LV
Sbjct: 123 EIDQLRHAATSALMSRNDAIVVASVSCIYGLGDPREYEASVLNVYTGQEYERNTLLRDLV 182

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R DI + RG FRV GD +E+FPS   D A+R+  FG++I+ I E  PLTG+    
Sbjct: 183 NIQYDRNDIDLQRGRFRVRGDVVEVFPSGYSDRAYRIEFFGDEIDRIVEVDPLTGEVHGG 242

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            ++I ++  +H++T    L  A+  IK E+  ++ + EKEG+LLEA+R++QR TYDLEML
Sbjct: 243 RDSISLFPATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLEML 302

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
              G    IENYSR +  R  GEPP TL ++ P+DSL+ +DESH T+P+I  MY GD +R
Sbjct: 303 REVGYTNGIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDRNR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL +YGFRLPS +DNRPL+ EE+       + VSATPG +EL +    IVEQ+IRPTG
Sbjct: 363 KQTLIDYGFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNRT-SRIVEQVIRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP +E+R    Q++D+  EINL  ++  R+ +T LTK+MAEDLT+YL +  I+VRY+H
Sbjct: 422 LLDPKIEVRPIEGQIDDLVAEINLRIERKERVFVTTLTKKMAEDLTDYLKDLGIKVRYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++KTLER++IIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   LIQ
Sbjct: 482 SDIKTLERMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLIQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N +VI+YAD IT S+++AIDET RRR  Q+++N++H I P+++ + + ++I
Sbjct: 542 TMGRAARNANGEVIMYADRITDSMKMAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDII 601

Query: 734 DPILLEDAATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             +  +  A  + S  D     L+ K+ K  + +L++QM  AA  L+FE AA +RD I  
Sbjct: 602 SVVKADKEAEKSDSFADLNFDELTAKQKKQMIANLKEQMQDAAKRLDFESAANLRDAIIE 661

Query: 793 LKSSP 797
           L+ S 
Sbjct: 662 LEGSV 666


>gi|255657365|ref|ZP_05402774.1| excinuclease ABC subunit B [Clostridium difficile QCD-23m63]
          Length = 656

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 478/657 (72%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++D+ P+GDQP AI  ++  I+  EK   LLGVTGSGKTFTMA +I+ +++P ++MA
Sbjct: 3   FKIKSDFKPTGDQPEAIKSIVDSINRNEKFSTLLGVTGSGKTFTMANIIQQVKKPTLIMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV  +DTYIEK++SIN++ID++RH
Sbjct: 63  HNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT S+LER D I++SSVSCIYG+G  + Y ++++ ++ G   ++ +++  L++ QY+R 
Sbjct: 123 SATASILERRDTIIISSVSCIYGLGDPKDYKELMLSIRPGMQRDRDDVIKRLIEIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++ A R+  FG++++ I+E   +TG+ +     + I+
Sbjct: 183 DINFTRGTFRVRGDILEIFPASNDEKAIRIEFFGDEVDRITEIDYVTGKIVGTRNHVVIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    +  A+  I++EL+ ++   ++  RLLEAQR+EQR  YD+EML+  G CQ
Sbjct: 243 PASHYVTTPERIEKAIIEIEDELQEQIKFFKENDRLLEAQRIEQRTKYDIEMLKEIGFCQ 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++TGR+ GE P TL ++ P+D L+ VDE+HVTIPQ+ GMY GD  RK +L E 
Sbjct: 303 GIENYSRHITGRSEGERPYTLMDFFPDDYLIIVDEAHVTIPQVRGMYAGDRSRKTSLIEN 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       + VSATPG +E++  +  I EQIIRPTGL+DP VE
Sbjct: 363 GFRLPSALDNRPLNFQEFEGNINQMLFVSATPGPYEIQHSE-TIAEQIIRPTGLLDPIVE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT YL E  I+V+Y+HS++ TLE
Sbjct: 422 VRPINNQIDDLVGEITKTIEKNERVLITTLTKKMSEDLTNYLKEIGIKVKYLHSDIVTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLGKFDVLVGINLLREGLDIPE  L+AILDADKEGFLRS+T+LIQTIGRAAR
Sbjct: 482 RTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETALIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT S+Q AIDET RRR+ Q  +N++HNI P+++++ I + I+   + +
Sbjct: 542 NENGRVIMYADRITDSMQNAIDETKRRRDIQNLYNEEHNITPKTIQKNIRDSIEATKVAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                   D       K + +A++  L+ +M  AA NL FE AA +RD++K+L+   
Sbjct: 602 EEVVYGISDTD----DKDEIRANIDKLKSEMMEAAQNLQFERAAELRDKVKQLEEKL 654


>gi|313885111|ref|ZP_07818863.1| excinuclease ABC, B subunit [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619802|gb|EFR31239.1| excinuclease ABC, B subunit [Eremococcus coleocola ACS-139-V-Col8]
          Length = 664

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/661 (52%), Positives = 460/661 (69%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F ++  Y  SGDQP AIA L+KG+   ++ Q+LLG TG+GKTFT+A VI+ + +P +
Sbjct: 1   MDHFNLKAPYQASGDQPKAIADLVKGLKEGKRDQILLGATGTGKTFTIANVIQEINKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LA QLYSE   FFP NAVEYFVSYYDYYQPEAYVP +D+YIEKE+SIN++ID+
Sbjct: 61  VLAHNKTLAGQLYSELLEFFPDNAVEYFVSYYDYYQPEAYVPSSDSYIEKEASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSA+ +LLER D IVV+SVSCIYG+   E Y   ++ L+ G  + +  +L+ LV+ QY
Sbjct: 121 LRHSASSALLERRDVIVVASVSCIYGLVDPEMYRDQVLSLREGQEISRAYVLNRLVEMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D    RGTFRV GD +EIF +  +    RV  FG++I+ I E   +TG+    ++  
Sbjct: 181 VRNDYDFQRGTFRVRGDVVEIFIASHDSSVLRVEWFGDEIDRIREVDVMTGEIKSELKHF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  +H+V  +     A++ I+ EL+ RL EL KE +LLEAQRLEQR  YD+EML   G
Sbjct: 241 PVYPATHFVANQEQTLRAVETIRAELEERLAELNKEHKLLEAQRLEQRTNYDIEMLLEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR++ GR PG+ P TL ++ P+D L+  DESH+T+PQI GMY GD  RK  L
Sbjct: 301 YCSGIENYSRHMDGRAPGQAPFTLLDFFPDDYLIVADESHITLPQIRGMYNGDRARKQQL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPLR EE+       I VSATPG +EL       VEQIIRPTGL+DP
Sbjct: 361 IDYGFRLPSALDNRPLRLEEFEKKVNQMIYVSATPGPYELNLTDNQYVEQIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R  + Q++D+  EIN    +G R+ +T LTK+M+EDLT+YL E + +V+Y+HS++K
Sbjct: 421 VIEVRPIKGQMDDIVSEINETISRGDRVFITTLTKKMSEDLTDYLKELDFKVKYLHSDIK 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRDLRLG FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SL+QTIGR
Sbjct: 481 TLERTEIIRDLRLGIFDVLVGINLLREGLDVPEVSLVMILDADKEGFLRSERSLVQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN + KVI+YAD IT S++ A+DET RRR+ Q+ +N+ H I PQ++K+++ ++I    
Sbjct: 541 AARNDHGKVIMYADAITDSMRKAMDETERRRKIQMAYNEAHGITPQTIKKEVRDLIKISK 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
              +     +I  Q  SLS+ + +  L  L  +M   A  +NFE AA +RD I  LK+  
Sbjct: 601 EVSSDEQEENILQQFKSLSRVQREEELDRLEMEMRQHAKAMNFEAAAELRDIIMELKAVF 660

Query: 798 Y 798
           Y
Sbjct: 661 Y 661


>gi|208779831|ref|ZP_03247175.1| excinuclease ABC, B subunit [Francisella novicida FTG]
 gi|208744286|gb|EDZ90586.1| excinuclease ABC, B subunit [Francisella novicida FTG]
          Length = 668

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/667 (53%), Positives = 480/667 (71%), Gaps = 7/667 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + T Y P+GDQP AI  L+ GI++  + Q+LLGVTGSGKT+TMA VI+  Q+P +
Sbjct: 1   MNKFNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++
Sbjct: 61  ILAHNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY
Sbjct: 121 MRLSATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +K++++   
Sbjct: 181 SRNDMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+ ++HYV  +      ++ IK+ELK R+   EKEG+LLEAQR+EQR  YD+EM++  G
Sbjct: 241 TIFPSTHYVASKERKEIVIEEIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RK+ L
Sbjct: 301 YCTGIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   V+Q+IRPTGL+DP
Sbjct: 361 VNYGFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R    QVED   EIN A  +  R+L+T LTK+MAE+LTEYL E  + VRY+HS++ 
Sbjct: 420 EVFVRPVAIQVEDALSEINKAIAKEERVLITTLTKKMAENLTEYLSEHGVNVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--P 735
            ARN N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D  P
Sbjct: 540 VARNQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSP 599

Query: 736 ILLEDAATTNISIDAQQLSLSK----KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            + + A   N+ +    + +S      +    +K+L K+M   A  L FE+A  IRD+I 
Sbjct: 600 EMQKRAYKNNLRLKVDDVDVSAILGMTEAMKVIKALEKRMRAYAKELEFEKATTIRDKIT 659

Query: 792 RLKSSPY 798
            +K    
Sbjct: 660 EIKQKFI 666


>gi|84624686|ref|YP_452058.1| excinuclease ABC subunit B [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|123521417|sp|Q2P0Z3|UVRB_XANOM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|84368626|dbj|BAE69784.1| excinuclease ABC subunit B [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 673

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/669 (55%), Positives = 487/669 (72%), Gaps = 12/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQPAAI +L+    +    Q LLGVTGSGKT+T+A V++ +Q+P +VMA
Sbjct: 5   FQLVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R D +VV++VS IYG+G+ E Y  + + L IG+ ++Q++L+  L   QY R 
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGEHIDQRQLIRHLTDLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RG FRV G+ +++FP+  +  A R+ +F  DIE+++ F PLTG+ +R ++   +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R    +A+  IKEELK RL +L  + +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQSKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  MY+GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +EL +  G + E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEVTELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  EI+   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS++ T+E
Sbjct: 425 IRPVGMQVDDLMSEIHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  K ILYAD +T+S+Q AIDE+ RRREKQ+E+N +H I P+SV+  I ++++    ED
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDESDRRREKQVEYNLEHGITPESVERPISDIMEG-ARED 603

Query: 741 AATTNISID-----------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           AA                      ++   +    LKSL ++M+  A +L FE AA+IRD+
Sbjct: 604 AAEKKSGKGRSKSRQVAEETPDYRAMKPAEIAGKLKSLEQKMYQHAKDLEFEAAAQIRDQ 663

Query: 790 IKRLKSSPY 798
           I++LK++  
Sbjct: 664 IQKLKTASL 672


>gi|291518275|emb|CBK73496.1| excinuclease ABC, B subunit [Butyrivibrio fibrisolvens 16/4]
          Length = 665

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/655 (52%), Positives = 468/655 (71%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI  L++G     ++Q LLGVTGSGKTFTMA VIE + +P +++A
Sbjct: 9   FKLHSEYKPTGDQPQAIEDLVRGFKEGNQMQTLLGVTGSGKTFTMANVIEKLNKPTLIIA 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYI K+SSIN++ID++R 
Sbjct: 69  HNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIAKDSSINDEIDKLRL 128

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+VSSVSCIYGIG  + +  M+V L+ GD  ++ +++  L+  QY R 
Sbjct: 129 SATASLSERRDVIIVSSVSCIYGIGEPDDFQNMMVSLRPGDFKDRDDVIHELINIQYMRN 188

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +E+ P+++ D   R+  FG++I+ I E   +TGQ  R +E + I+
Sbjct: 189 DMDFDRGTFRVRGDVLEVIPANVSDYGIRIEFFGDEIDRICETDIMTGQVKRELEHVAIF 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +N+A   I+ EL+ R+   + E +L+EAQR+ +R  +D+EML  TG C 
Sbjct: 249 PASHYVIPQDKINSACASIEAELEERVKFFKSEDKLIEAQRIAERTNFDIEMLRETGFCS 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++T + PGEPP  L +Y  +D L+ +DESH+T+PQI GM+ GD  RK TL EY
Sbjct: 309 GIENYSRHMTNQQPGEPPKCLIDYFDDDFLIIIDESHITLPQIRGMFAGDQARKRTLVEY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATPG +E E  + +  EQ+IRPTGL+DP VE
Sbjct: 369 GFRLPSALDNRPLNFGEFESKIDQIMFVSATPGDYEEEH-EMLRTEQVIRPTGLLDPEVE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+++EI     +  ++++T LTKRMAEDLT+YL E  +RV+YMHS++ T+E
Sbjct: 428 VRPVEGQIDDLFNEIKKETAKKNKVMITTLTKRMAEDLTDYLAELGVRVKYMHSDIDTME 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 488 RAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSERSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YADT+T+S++ AI ET RRRE Q+ +N+ H I P+++++ + E+I   + +D
Sbjct: 548 NSEGHVIMYADTMTESMEKAISETERRREIQMAYNEAHGITPKTIQKSVRELI--SISKD 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            A   +        ++K++ +  ++ ++K+M  AA  LNFE AA  RD++  LK+
Sbjct: 606 IAKKEMQFKKDPEEMNKQELEKLIEDIQKKMKKAASELNFEAAAEYRDKMVELKN 660


>gi|330686480|gb|EGG98074.1| excinuclease ABC, B subunit [Staphylococcus epidermidis VCU121]
          Length = 661

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/657 (52%), Positives = 471/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +++ P GDQP AI +++KG+   ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKLNSEFDPQGDQPEAIKKIVKGVKEGKRHQTLLGATGTGKTFTMSNVIQQVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +E+ ELL  LV  QY R
Sbjct: 126 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMERSELLRKLVDVQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++++ I E   LTG+ IR  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEVDRIREVNYLTGEVIREREHFAI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    +  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVD 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 366 HGFRLPSALDNRPLKFEEFEEKTNQLVYVSATPGPYEIEHTDE-MVEQIIRPTGLLDPKI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R    Q++D+  EI     +  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 DVRPTENQIDDLLSEIQDRIDKNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +D +VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD IT S++ AIDET RRR+ Q+ HN+KH I PQ++ +KI +VI   +  
Sbjct: 545 RNDRGEVIMYADKITDSMRYAIDETQRRRDIQMAHNEKHGITPQTINKKIHDVISATVES 604

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D    N  I+  +  ++KK+ +  ++++ K+M  AA +L+FE+A  +RD +  LKS 
Sbjct: 605 DDTNENKQIEVPK-KMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKSE 660


>gi|91205909|ref|YP_538264.1| excinuclease ABC subunit B [Rickettsia bellii RML369-C]
 gi|122425348|sp|Q1RHI9|UVRB_RICBR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|91069453|gb|ABE05175.1| Excinuclease ABC subunit B [Rickettsia bellii RML369-C]
          Length = 661

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/661 (58%), Positives = 491/661 (74%), Gaps = 3/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F + +DY P+GDQP AI +++KG++++++ Q+LLG+TGSGKTFTMA +IE   RP +
Sbjct: 1   MSNFSIISDYKPAGDQPKAIDEIIKGLNNKKRSQMLLGITGSGKTFTMANIIERTNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MA NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+P+TD +IEK+SSINEQID 
Sbjct: 61  IMAHNKTLAAQIYSEMKSIFPKNAVEYFVSYYDYYQPEAYIPKTDVFIEKDSSINEQIDL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSATRSLLER D IVVSSVSCIYG+GS + Y QM V L+ G S  + +LL+ LV  QY
Sbjct: 121 MRHSATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMTVNLEPGKSYPRDKLLNDLVNLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DIG  RG FRV GD++++FPSH  D AWR+S FGN++E I EF PLTG+K+  ++  
Sbjct: 181 ERNDIGFERGCFRVKGDNVDVFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLVKLDKA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY NSH+V P+ T+N A+  I+EEL+ R+  L+ + +LLE QR+ QR  YDLEML  TG
Sbjct: 241 IIYGNSHFVMPKETVNKAISEIEEELQKRIAFLKSQDKLLETQRINQRTQYDLEMLTETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC+ +ENYSR+ TGR  GEPPPTLFEY+P+D+LLFVDESHV++PQI  MY GD  RK  L
Sbjct: 301 SCKGVENYSRFFTGRKAGEPPPTLFEYLPKDALLFVDESHVSVPQIRAMYNGDRARKEVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEEW+  RP T+ VSATP  +EL +  G +VE IIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLKFEEWDNFRPQTVFVSATPSLFELNETGGEVVELIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              I+ A  QVED+  EI     +G  +L+T LTK+MAEDLT YL E   +  Y+HS + 
Sbjct: 421 ECIIKPATNQVEDLVGEIQSTIAKGFCVLVTTLTKKMAEDLTNYLQELKYKTSYLHSNIH 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI+RDLR G  D+LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 481 TLERIEILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VILYAD +TKSI  AI ET RRR  Q EHN+K+ I P+++   I  + +   
Sbjct: 541 AARNSEGRVILYADKMTKSIDKAISETMRRRTIQQEHNEKYGIIPKTINRTIHALAE--- 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           LE   +         L  +  K KAH+  LRK+M  AA NL FE+AA++RD++K L+ + 
Sbjct: 598 LEKVDSKLDKKQTHNLFENPAKLKAHIDKLRKEMLKAASNLEFEQAAKLRDQLKTLEEAA 657

Query: 798 Y 798
            
Sbjct: 658 L 658


>gi|218134926|ref|ZP_03463730.1| hypothetical protein BACPEC_02831 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990311|gb|EEC56322.1| hypothetical protein BACPEC_02831 [Bacteroides pectinophilus ATCC
           43243]
          Length = 665

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/658 (51%), Positives = 467/658 (70%), Gaps = 2/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI +L+ G     + Q L+GVTGSGKTFTMA +I+ +Q+P +
Sbjct: 4   VMEFRLHSEYQPTGDQPQAIDRLVAGFMEGNQFQTLVGVTGSGKTFTMANIIQKLQKPTL 63

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYI K+SSIN++ID+
Sbjct: 64  IISHNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSINDEIDK 123

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+VSSVSCIYG+G+   Y  M+V L+     ++ +++  LV  QY
Sbjct: 124 LRHSATAALSERKDVIIVSSVSCIYGLGAPIDYRNMVVSLRPRMEADRDDVIRKLVDMQY 183

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RGTFRV GD +EI+PS     A RV  FG++++ I+E   LTG+    +E +
Sbjct: 184 VRNEMDFKRGTFRVHGDVVEIYPSASSGDAVRVEFFGDEVDRITEVDTLTGEIKSVLEHV 243

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+ NSHY+  +  +  A+  IK EL+ R+   + E +L+EAQR+E+R  +D+EML+ TG
Sbjct: 244 AIFPNSHYIVEKEKMEAAIAGIKAELEERIKYFKSEDKLIEAQRIEERTNFDIEMLQETG 303

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTG  PG PP TL +Y P+D L+ +DESH+T+PQI GMY GD  RK TL
Sbjct: 304 FCSGIENYSRHLTGLAPGMPPYTLIDYFPKDFLIIIDESHITVPQIRGMYAGDQSRKTTL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL F+E+       + VSATP  +E +  + +  EQIIRPTGL+DP
Sbjct: 364 VDYGFRLPSAKDNRPLNFQEFESKIDQMLFVSATPAQYEADH-ELLRAEQIIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    Q++D+  EIN   +   ++L+T LTK MAEDLT+YL E  IRVRY+HS++ 
Sbjct: 423 EISVRPVEGQIDDLITEINKETKNKHKVLVTTLTKNMAEDLTKYLKEVGIRVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            LER +IIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++TSLIQTIGR
Sbjct: 483 ALERTKIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRTETSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YADTIT S++ AIDET RRR  Q ++N++HNI P+++++ + ++I    
Sbjct: 543 AARNSEGHVIMYADTITDSMRQAIDETERRRAIQQKYNEEHNITPKTIQKAVRDLISISR 602

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             +   T ++++    S+S+++ +   + + K MH AA  LNFEEAA++RD++  ++ 
Sbjct: 603 AAEPKDT-MNLEKDYESMSRRELEKVARQIEKNMHRAAAELNFEEAAQLRDQMIEVRK 659


>gi|156743469|ref|YP_001433598.1| excinuclease ABC subunit B [Roseiflexus castenholzii DSM 13941]
 gi|156234797|gb|ABU59580.1| excinuclease ABC, B subunit [Roseiflexus castenholzii DSM 13941]
          Length = 670

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/662 (52%), Positives = 469/662 (70%), Gaps = 4/662 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P+GDQP AIAQL++GI +  K Q LLG TG+GKT TMA V   ++RPA+VMA
Sbjct: 3   FRIEAPFQPAGDQPKAIAQLVEGIRAGYKHQTLLGATGTGKTLTMAHVFSQLERPALVMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L +QLY+EF+   P  AVE F+SYYD Y PEAYVP  D YIEKE+ INE+IDR+RH
Sbjct: 63  HNKTLVSQLYAEFRELLPDAAVEMFISYYDMYTPEAYVPSKDLYIEKEAEINEEIDRLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++L  R D ++V+SVS IYG+GS   Y Q+++ +++G+   + +LL  L+  Q++R 
Sbjct: 123 AATQALFTRRDVLIVASVSAIYGLGSPHEYGQVVIPIRVGEVRNRDKLLRQLLDLQFERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+++IFP++ E +A RV  +G+D+E I+EF PLTG+ +     + IY
Sbjct: 183 DMDFHRGTFRVRGDTLDIFPANQE-IALRVEFWGDDVERITEFDPLTGEVLIERTAVNIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T   TL  A+  I+ EL +RL ELE++G+LLEA RL+QR  YDLEML   G C 
Sbjct: 242 PAKHFITTAETLKLAITDIQAELAVRLAELEQQGKLLEAARLKQRTNYDLEMLSEVGYCS 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG+ P TL +Y P+D +LF+DESH+T+PQI GMY GD  RK TL +Y
Sbjct: 302 GIENYSRHLDRRAPGQTPWTLLDYFPDDFILFIDESHITLPQIRGMYAGDRSRKETLVDY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+       I VSATPG +E E  Q  IVEQIIRPTGL+DP VE
Sbjct: 362 GFRLPSALDNRPLRFDEFERHIHQVIYVSATPGPYEYEHSQQ-IVEQIIRPTGLLDPTVE 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+  EI    Q+G R L+T LTKRMAEDL +YL E  IR  Y+HS+++TLE
Sbjct: 421 VRPTRGQIDDLVGEIKRRVQKGQRALVTTLTKRMAEDLADYLKEMGIRTSYLHSDIETLE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS +SLIQ IGRAAR
Sbjct: 481 RVEILRDLRLGVYDVVVGINLLREGLDLPEVSLVAILDADKEGYLRSGSSLIQIIGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738
           ++   VI+YADTIT S++ AIDET RRR  Q  +N++HNI P  + + + ++ D +  + 
Sbjct: 541 HIEGAVIMYADTITPSMKFAIDETNRRRAIQEAYNREHNITPVGISKAVRDLTDRVRKVA 600

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           E+      ++  ++L + K +    +K L KQM  AA  L FE+AA +RD+I  L+ +  
Sbjct: 601 EERGVYQAAVPGEELPIPKDEIVKLIKELEKQMKQAAKELAFEKAAALRDQIIELRRTLA 660

Query: 799 FQ 800
             
Sbjct: 661 LD 662


>gi|90417042|ref|ZP_01224970.1| excinuclease ABC, B subunit [marine gamma proteobacterium HTCC2207]
 gi|90331058|gb|EAS46314.1| excinuclease ABC, B subunit [marine gamma proteobacterium HTCC2207]
          Length = 670

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/669 (54%), Positives = 485/669 (72%), Gaps = 9/669 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +    + +DY P+GDQP AI  L++G+ +    Q LLGVTGSGKTFT+AKV+EA+QRP I
Sbjct: 1   MPPLTVVSDYSPAGDQPEAIKGLVQGLQNGLAAQTLLGVTGSGKTFTVAKVMEAVQRPTI 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           VMA NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++++N  I++
Sbjct: 61  VMAHNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAVNSHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++L+ER D IV+++VS IYG+G  +SY +M++ L  G+ ++Q+++L  L + QY
Sbjct: 121 MRLSATKALMERRDVIVIATVSAIYGLGDPKSYMKMLLHLSRGEKIDQRDILRRLAELQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR DI   R ++RV GD I+++P+  +  A R+ +F +++E ++ F PLTG+ +R V   
Sbjct: 181 KRNDIDFDRSSYRVRGDVIDVYPADSDYEALRIELFDDEVENLTLFDPLTGEVLRKVPRY 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SHYVTPR T+  A   I  EL  RL +L    +L+EAQRL +R+ YD EM+   G
Sbjct: 241 TIYPKSHYVTPRHTVVEAADKIMLELDERLTQLRSVDKLVEAQRLGERVRYDSEMMRELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR PG+PPPTLF+Y+P+D+LL +DESHVT+PQI GMY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPPGDPPPTLFDYLPDDALLVIDESHVTVPQIGGMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPLRF+EW  L P  I VSATP  +E    +G +VEQ++RPTGL+DP
Sbjct: 361 VEYGFRLPSALDNRPLRFDEWEGLAPQMIFVSATPSKYEAAN-EGQVVEQVVRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R A  QV+DV  EI   A    RIL+TVLTKRMAEDLT+YL E ++RVRY+HS++ 
Sbjct: 420 EIEVRPALNQVDDVLSEIKRCAAANERILITVLTKRMAEDLTDYLAEHSVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAI DADKEGFLRS TSLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSDTSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           +AR+V  K ILYAD IT S++ AIDET RRR KQ+EHN+ + + P  + + + ++++   
Sbjct: 540 SARHVRGKAILYADKITGSMRRAIDETERRRAKQVEHNRLNGLTPVGITKSVTDIMEGAY 599

Query: 738 LEDAATTNISIDAQ--------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                T      A+        +  ++ +     LK L ++M+  A NL FEEAA++RDE
Sbjct: 600 AGQGKTKRGKKVAEGLGRYVLDEPPVAIRDIAKELKRLDEKMYQHARNLEFEEAAQVRDE 659

Query: 790 IKRLKSSPY 798
           I +L+    
Sbjct: 660 IGKLRERSL 668


>gi|326803911|ref|YP_004321729.1| excinuclease ABC, B subunit [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650308|gb|AEA00491.1| excinuclease ABC, B subunit [Aerococcus urinae ACS-120-V-Col10a]
          Length = 664

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/660 (52%), Positives = 469/660 (71%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI +L++G+ + +K Q+LLG TG+GKTFTMA VI    RP +V+A
Sbjct: 5   FELVSSYQPSGDQPQAIKKLVEGVENNDKAQVLLGGTGTGKTFTMANVIAETNRPTLVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFPHNAVEYFVSYYDYYQPEAYVP +D+YIEK +S+N++ID++RH
Sbjct: 65  HNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPSSDSYIEKSASVNDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT S+LER D I+V+SVSCIYG+     Y   ++ ++ G  V++ + +  LV  QY+R 
Sbjct: 125 SATSSILERRDTIIVASVSCIYGLVDPMEYKNHVLSIRQGQEVDRNDFMRRLVDMQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +E+F    +  A RV  FG++I+ I +   LTG+   +V+   IY
Sbjct: 185 DIEFRRGTFRVRGDVVEVFLPSRDSEAIRVEFFGDEIDRIRQVDVLTGEVKNDVKHYPIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+V     +  A+  I+ EL+++L +   EG+LLEAQRLEQR  YD+EML   G C 
Sbjct: 245 PATHFVVDYNKMQRAVDSIEAELEVQLKKFNDEGKLLEAQRLEQRTRYDIEMLLEMGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG+PP TL ++ P+D LL VDESH+T+PQ+ GMY GD  RK  L +Y
Sbjct: 305 GIENYSRHMDGRAPGQPPYTLLDFFPDDYLLMVDESHMTMPQVRGMYNGDKARKEQLVDY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       I VSATPG +E+E+  G +VEQIIRPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLKLAEFEERVNQAIYVSATPGDYEIEKSNGEVVEQIIRPTGLLDPKVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +G R+ +T LTK+M+EDLT+YL E  I+V+Y+HS++KTLE
Sbjct: 425 VRPIKGQIDDLISEINERVDRGDRVFVTTLTKKMSEDLTDYLEEVGIKVKYLHSDIKTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LV ILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 485 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVIILDADKEGFLRNERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YADT+T S+Q AIDET RRR  Q  +N++H+I P++++++I + I      +
Sbjct: 545 NENGHVIMYADTVTGSMQAAIDETARRRAIQEAYNEEHHITPKTIQKEIRDSIRITTAVN 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
            A  N S+      +++ + +  + ++  +M  AA +LNFE+AA +RD I  LK+    +
Sbjct: 605 NAEENESLMDTIRGMNRNEKEEAVHNVELEMRQAAKDLNFEKAAELRDIILELKAEYKIK 664


>gi|125623401|ref|YP_001031884.1| excinuclease ABC subunit B [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|189037980|sp|A2RIP3|UVRB_LACLM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|124492209|emb|CAL97138.1| UvrABC system protein B [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070148|gb|ADJ59548.1| excinuclease ABC subunit B [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 692

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/684 (50%), Positives = 474/684 (69%), Gaps = 33/684 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQ  AI++L++ I + EK Q+L G TG+GKT+TM++VI    +P +VMA
Sbjct: 11  FELVSKYDPAGDQGQAISELVENIENGEKAQILRGATGTGKTYTMSQVIAQTGKPTLVMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 71  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCIYG+GS + Y   +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 131 SATSSLLERNDVIVVASVSCIYGLGSPKEYQDSVVSLRPGQEISRDQLLNDLVGIQFERN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 191 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRIREIEVLTGQVLGEVDHLAIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  ++  I+ EL+ +L     EG+LLEAQRLEQR  YD+EML   G C 
Sbjct: 251 PATHFMTNDDRMEESIAKIEAELEAQLKVFRSEGKLLEAQRLEQRTNYDIEMLREMGYCN 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR  GEPP TL ++ P+D ++ +DESH+T+ Q+ GMY GD  RK  L  Y
Sbjct: 311 GVENYSRHMDGREEGEPPYTLLDFFPDDFMIMIDESHMTMGQVKGMYNGDRARKEMLCNY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +E+EQ    IVEQIIRPTGL+DP VE
Sbjct: 371 GFRLPSALDNRPLKREEFESHVHQIVYVSATPGDYEMEQT-DTIVEQIIRPTGLLDPVVE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+  A++  R+ +T LTK+M+EDLT Y  E  I+V+YMHS++KTLE
Sbjct: 430 VRPMMGQIDDLVGEIHKRAEKNERVFVTTLTKKMSEDLTAYFKEMGIKVKYMHSDIKTLE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 490 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 549

Query: 681 NVNSKVILYAD-----------------------------TITKSIQLAIDETTRRREKQ 711
           N    VILY+D                              IT+S++ A+DET RRR+ Q
Sbjct: 550 NSEGHVILYSDMAKALDENDPADKEILDSGYYTEYEGKKYKITRSMKHAMDETARRRDIQ 609

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771
           + +N++H I PQ++K++I ++I      D+       +    +++KK+ KA +K L K+M
Sbjct: 610 MAYNEEHGITPQTIKKEIRDLIAITKKTDSGELE---EVDASAMNKKERKALVKKLEKEM 666

Query: 772 HLAADNLNFEEAARIRDEIKRLKS 795
             AA  L+FE AA++RD +  L++
Sbjct: 667 QQAAAALDFEGAAQLRDMVLELRA 690


>gi|94968809|ref|YP_590857.1| excinuclease ABC subunit B [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550859|gb|ABF40783.1| Excinuclease ABC subunit B [Candidatus Koribacter versatilis
           Ellin345]
          Length = 662

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/658 (53%), Positives = 472/658 (71%), Gaps = 1/658 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ + Y P GDQ  AI QL  GI   EK Q+LLGVTGSGKTFTMAK+IE + RPA+++A 
Sbjct: 4   KVSSPYKPQGDQARAIEQLTGGIRDGEKHQVLLGVTGSGKTFTMAKIIEQLNRPALILAH 63

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK LAAQLY EFKNFFP+NAVEYFVSYYDYYQPEAY+P  D YIEKE+++N+++D++R +
Sbjct: 64  NKTLAAQLYHEFKNFFPNNAVEYFVSYYDYYQPEAYIPAGDVYIEKEATVNDELDKLRLA 123

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           ATRSL ER D I+V+SVSCIYG+GS E+Y  M++ L+ G  +++ ++L  LV+  Y+R +
Sbjct: 124 ATRSLFERRDVIIVASVSCIYGLGSPEAYYGMLLFLEKGQRIKRDDILKKLVEILYERTN 183

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               RGTFRV GD IEIFP++ ED A+R+ MFG+++E +S+  PL G   +  + + IY 
Sbjct: 184 EDFRRGTFRVRGDVIEIFPTY-EDTAYRIEMFGDEVESLSQIDPLFGTVKQKYQRLPIYP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            +HYV      N+A+  I EEL     EL+K+GRL+E+QR+ QR  +DLEM++  G C  
Sbjct: 243 KTHYVMKPERKNSAVTTILEELGWWENELQKQGRLVESQRIHQRTRFDLEMIKEMGYCHG 302

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSR+ TGR PGEPPPTL +Y+P + LLF+DESH T+PQ+ GM+ GD  RK  L EYG
Sbjct: 303 IENYSRHFTGRLPGEPPPTLLDYMPREFLLFIDESHQTVPQLHGMWHGDRSRKENLIEYG 362

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPS +DNRPL FEE+       + VSATPG +EL +  G++VEQIIRPTGL+DP VE+
Sbjct: 363 FRLPSALDNRPLTFEEFENRVNQAVYVSATPGPYELTKAAGVVVEQIIRPTGLIDPEVEV 422

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R  + Q++D+  EI   A++  R+L+T LTKRMAEDL+EY  E  +R RYMHSE++TLER
Sbjct: 423 RPVKGQIDDLLHEIRKRAEKRERVLVTTLTKRMAEDLSEYYTEVGVRCRYMHSEIETLER 482

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           I+I+RDLR G+FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GR ARN
Sbjct: 483 IKILRDLRKGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSQGSLIQTMGRCARN 542

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           +  + ILYAD +T S++ A+DET RRR  Q  +N +H I P+S+   +   +  I+  D 
Sbjct: 543 LEGRAILYADRMTDSMKKAMDETYRRRAIQEAYNVEHGITPESIVRPVDMALAAIVGADY 602

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
                  D      S+++    ++ L  +M  AA    FE+AA++RD+IK L++  + 
Sbjct: 603 VDLTAQPDEIPEFKSQEQLDKFVEKLEGEMREAAKRFEFEKAAKLRDQIKELRTKEFM 660


>gi|219670731|ref|YP_002461166.1| excinuclease ABC subunit B [Desulfitobacterium hafniense DCB-2]
 gi|219540991|gb|ACL22730.1| excinuclease ABC, B subunit [Desulfitobacterium hafniense DCB-2]
          Length = 683

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/657 (54%), Positives = 472/657 (71%), Gaps = 7/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  Y PSGDQP AI  L++ IHS  + Q LLGVTGSGKTFTMA +IE +QRP +++A
Sbjct: 3   FRLRAPYKPSGDQPQAIDALVESIHSGRRHQTLLGVTGSGKTFTMANIIEKVQRPTLILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID+MRH
Sbjct: 63  HNKTLAAQLYTEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IVV+SVSCIYG+GS E Y  ++V L+ G  +++ ++L  L+  QY R 
Sbjct: 123 SATAALFERRDVIVVASVSCIYGLGSPEEYRDLMVSLRQGQEIDRNDILKKLISIQYDRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +E+ P+   + A R+ MFG++IE I E   LTG+ +     + I+
Sbjct: 183 DLAFERGTFRVRGDVVEVHPAGSSEHAVRIEMFGDEIEHIYEINVLTGEILGERRHVSIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHYVT R  +  A + I++EL+ +L   + E +LLEAQRLEQR  YDLEML   G C 
Sbjct: 243 PNSHYVTARDKVLVAAENIEKELEEQLRRFKDEDKLLEAQRLEQRTRYDLEMLREMGFCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+LT R  GE P TL  + PED L+ +DESHVT+PQ+ GMY GD  RK TL +Y
Sbjct: 303 GVENYSRHLTFREAGETPYTLLHFFPEDYLMMIDESHVTLPQVRGMYEGDRSRKTTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L P  + +SATPG +ELE C   IVEQIIRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLKFAEFETLVPQRVYISATPGPYELEHCPQ-IVEQIIRPTGLLDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +  R+L+T LTK+MAEDLT+YL   N+ V+Y+HS++ TLE
Sbjct: 422 VRPTKGQIDDLIGEINQRIARDERVLVTTLTKKMAEDLTDYLKNLNMAVKYLHSDITTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+R+LRLG  DV+VGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 482 RVEILRELRLGDIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD +T+S+++AI ET RRR  Q  +N+KH I PQ++++KI E+ +   + +
Sbjct: 542 NAQGKVIMYADQMTRSMEVAIGETNRRRAIQEAYNEKHGITPQTIRKKIYEIPEATKVAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                 S       +  ++    LKSL ++M LAA +++FE AA IRD +  LK   
Sbjct: 602 KKAAYGS------KMPAEELAELLKSLEQEMRLAAKDMDFERAAEIRDAMIELKGEE 652


>gi|239931934|ref|ZP_04688887.1| excinuclease ABC subunit B [Streptomyces ghanaensis ATCC 14672]
 gi|291440302|ref|ZP_06579692.1| excinuclease ABC subunit B [Streptomyces ghanaensis ATCC 14672]
 gi|291343197|gb|EFE70153.1| excinuclease ABC subunit B [Streptomyces ghanaensis ATCC 14672]
          Length = 716

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/708 (50%), Positives = 482/708 (68%), Gaps = 41/708 (5%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             +++  + +  F++ + Y PSGDQP AIA L + I + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVSHIERTVAPFEVVSSYRPSGDQPTAIADLARRIEAGEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V L++GD +++ +L
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLRVGDEIDRDQL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD++EIFP + E++A R+ MFG++IE +S  +P+TG
Sbjct: 182 LRRFVDIQYTRNDMAFTRGTFRVRGDTVEIFPVY-EELAVRIEMFGDEIEALSTLHPVTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I + + + ++  SHYV     +  A+  I++EL  RL ELEK+G+LLEAQRL  R TY
Sbjct: 241 EIISDDQQLYVFPASHYVAGPERMERAVNDIEKELVERLAELEKQGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EML   G+C  +ENYS +  GR PG PP TL +Y P+D LL +DESHVT+PQI  MY 
Sbjct: 301 DIEMLRQIGTCSGVENYSMHFDGRLPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G +VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLKWEEFQERVGQTVYLSATPGQYELSRSDG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+
Sbjct: 420 IRPTGLVDPEVVVKPTEGQIDDLVHEIRTRVEKDERVLVTTLTKKMAEDLTDYFLELGIQ 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL R+E++R+LR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSDVDTLRRVELLRELRSGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +NK + I+PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQIAYNKANGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI---------------------------------------SID 749
           I +++  I  ED  T  +                                       + +
Sbjct: 600 INDIVAQIAREDIDTEQLLGSGYRKAGKDGGGTRTPVPALGTKAGKGAKAAKGAKGKAGE 659

Query: 750 AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                    +    ++ L  +M  AA +L FE AAR+RDE+  +K   
Sbjct: 660 TAPTDRPAAELAEQIEELTARMRAAAADLQFEIAARLRDEVSEMKKEL 707


>gi|157826730|ref|YP_001495794.1| excinuclease ABC subunit B [Rickettsia bellii OSU 85-389]
 gi|189037991|sp|A8GV86|UVRB_RICB8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|157802034|gb|ABV78757.1| excinuclease ABC subunit B [Rickettsia bellii OSU 85-389]
          Length = 661

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/661 (58%), Positives = 491/661 (74%), Gaps = 3/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F + +DY P+GDQP AI +++KG++++++ Q+LLG+TGSGKTFTMA +IE   RP +
Sbjct: 1   MSNFSIISDYKPAGDQPKAIDEIIKGLNNKKRSQMLLGITGSGKTFTMANIIERTNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MA NK LAAQ+YSE K+ FP NAVEYFVSYYDYYQPEAY+P+TD +IEK+SSINEQID 
Sbjct: 61  IMAHNKTLAAQIYSEMKSIFPKNAVEYFVSYYDYYQPEAYIPKTDVFIEKDSSINEQIDL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSATRSLLER D IVVSSVSCIYG+GS + Y QM V L+ G S  + +LL+ LV  QY
Sbjct: 121 MRHSATRSLLERRDVIVVSSVSCIYGLGSPDLYYQMTVNLEPGKSYPRDKLLNDLVNLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DIG  RG FRV GD++++FPSH  D AWR+S FGN++E I EF PLTG+K+  ++  
Sbjct: 181 ERNDIGFERGCFRVKGDNVDVFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLVKLDKA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY NSH+V P+ T+N A+  I+EEL+ R+  L+ + +LLE QR+ QR  YDLEML  TG
Sbjct: 241 IIYGNSHFVMPKETVNKAISEIEEELQKRIAFLKSQDKLLETQRINQRTQYDLEMLTETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC+ +ENYSR+ TGR  GEPPPTLFEY+P+D+LLFVDESHV++PQI  MY GD  RK  L
Sbjct: 301 SCKGVENYSRFFTGRKAGEPPPTLFEYLPKDALLFVDESHVSVPQIRAMYNGDRARKEVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEEW+  RP T+ VSATP  +EL +  G +VE IIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLKFEEWDNFRPQTVFVSATPSLFELNETGGEVVELIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              I+ A  QVED+  EI     +G  +L+T LTK+MAEDLT YL E   +  Y+HS V 
Sbjct: 421 ECIIKPATNQVEDLVGEIQSTIAKGFCVLVTTLTKKMAEDLTNYLQELKYKTSYLHSNVH 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI+RDLR G  D+LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 481 TLERIEILRDLRQGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VILYAD +TKSI  AI ET RRR  Q EHN+K+ I P+++   I  + +   
Sbjct: 541 AARNSEGRVILYADKMTKSIDKAISETMRRRTIQQEHNEKYGIIPKTINRTIHALAE--- 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           LE   +         L  +  K KAH+  LRK+M  AA NL FE+AA++RD++K L+ + 
Sbjct: 598 LEKVDSKLDKKQTHNLFENPAKLKAHIDKLRKEMLKAASNLEFEQAAKLRDQLKTLEEAA 657

Query: 798 Y 798
            
Sbjct: 658 L 658


>gi|116511361|ref|YP_808577.1| excinuclease ABC subunit B [Lactococcus lactis subsp. cremoris
           SK11]
 gi|123320587|sp|Q031G7|UVRB_LACLS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|116107015|gb|ABJ72155.1| Excinuclease ABC subunit B [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 692

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/684 (50%), Positives = 474/684 (69%), Gaps = 33/684 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQ  AI++L++ I + EK Q+L G TG+GKT+TM++VI    +P +VMA
Sbjct: 11  FELVSKYDPAGDQGQAISELVENIENGEKAQILRGATGTGKTYTMSQVIAQTGKPTLVMA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 71  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVSCIYG+GS + Y   +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 131 SATSSLLERNDVIVVASVSCIYGLGSPKEYQDSVVSLRPGQEISRDQLLNDLVGIQFERN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  ++ A+RV  FG++I+ I E   LTGQ +  V+ + I+
Sbjct: 191 DIDFQRGCFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRIREIEVLTGQVLGEVDHLAIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  ++  I+ EL+ +L     EG+LLEAQRLEQR  YD+EML   G C 
Sbjct: 251 PATHFMTNDDRMEESIAKIEAELEAQLKVFRSEGKLLEAQRLEQRTNYDIEMLREMGYCN 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR++ GR  GEPP TL ++ P+D ++ +DESH+T+ Q+ GMY GD  RK  L  Y
Sbjct: 311 GVENYSRHMDGREEGEPPYTLLDFFPDDFMIMIDESHMTMGQVKGMYNGDRARKEMLCNY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +E+EQ    IVEQIIRPTGL+DP VE
Sbjct: 371 GFRLPSALDNRPLKREEFESHVHQIVYVSATPGDYEMEQT-DTIVEQIIRPTGLLDPVVE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI+  A++  R+ +T LTK+M+EDLT Y  E  I+V+YMHS++KTLE
Sbjct: 430 VRPMMGQIDDLVGEIHKRAEKNERVFVTTLTKKMSEDLTAYFKEMGIKVKYMHSDIKTLE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAAR
Sbjct: 490 RTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 549

Query: 681 NVNSKVILYAD-----------------------------TITKSIQLAIDETTRRREKQ 711
           N    VILY+D                              IT+S++ A+DET RRR+ Q
Sbjct: 550 NSEGHVILYSDMAKALDENDPADKEILDSGYYTEYEGQKYKITRSMKHAMDETARRRDIQ 609

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771
           + +N++H I PQ++K++I ++I      D+       +    +++KK+ KA +K L K+M
Sbjct: 610 MAYNEEHGITPQTIKKEIRDLIAITKKTDSGELE---EVDASAMNKKERKALVKKLEKEM 666

Query: 772 HLAADNLNFEEAARIRDEIKRLKS 795
             AA  L+FE AA++RD +  L++
Sbjct: 667 QQAAAALDFEGAAQLRDMVLELRA 690


>gi|28212086|ref|NP_783030.1| excinuclease ABC subunit B [Clostridium tetani E88]
 gi|81841130|sp|Q890X8|UVRB_CLOTE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|28204529|gb|AAO36967.1| excinuclease ABC subunit B [Clostridium tetani E88]
          Length = 661

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/660 (53%), Positives = 468/660 (70%), Gaps = 2/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +   ++ + + P GDQP AI  +  GI   +K Q LLGVTGSGKTFTMAK+IE +Q+P +
Sbjct: 1   MEKLKVHSKFEPKGDQPKAIRSISDGILKGDKYQTLLGVTGSGKTFTMAKIIEQVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF+ FFP N+VEYFVSYYDYYQPEAYV +TDTYIEK++SIN++ID+
Sbjct: 61  VLAHNKTLAAQLCSEFREFFPENSVEYFVSYYDYYQPEAYVAQTDTYIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +LLER D I+VSSVSCIYG+G+ E Y  + + L+ G   ++ E+L  LV+ QY
Sbjct: 121 LRHSATSALLERKDVIIVSSVSCIYGLGNPEEYKNLTISLREGMEKDRDEILKKLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R +I  +RGTFRV GD ++IFP+   ++A RV  FG++IE+I EF  LTG+ +     +
Sbjct: 181 ERNEINFVRGTFRVRGDVLDIFPASSSNIAIRVEFFGDEIEKIREFDSLTGEIVGKRNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+ T +  L   +K I+EEL++R+ E  KE +LLEAQR++QR  +D+EM+   G
Sbjct: 241 SIFPASHFATSKERLEVGIKKIEEELEIRVQEFIKEDKLLEAQRIKQRTNFDIEMMRELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L GR  G PP TL +Y PED LLFVDESHVT+PQ+ GMY GD  RK  L
Sbjct: 301 YCSGIENYSRILDGRAAGTPPQTLLDYFPEDFLLFVDESHVTLPQVRGMYGGDRSRKDNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS  DNRPL+F E+       + VSATPG  EL++    + EQIIRPTGL+DP
Sbjct: 361 VNYGFRLPSAYDNRPLKFNEFQSKLNRVVFVSATPGDHELDKSSN-VAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++  + Q++D+Y  IN   + G R+L+T LTK+MAEDLTEY  E NI+ RY+HS++ 
Sbjct: 420 EIIVKPIKGQIDDLYSNINETIKNGFRVLVTTLTKKMAEDLTEYFKEMNIKTRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++IIR+LRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQ IGR
Sbjct: 480 TIERMKIIRELRLGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSDRSLIQIIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+YAD ITKS+  AI ET RRR  Q+E+NK++NI PQ++ + I EVI+   
Sbjct: 540 AARNSESKVIMYADNITKSMDRAIKETNRRRVIQMEYNKENNIVPQTIIKDIREVIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + +      S++ + +  + +  +  +      M  AA  L FE+AA  RD I++LK   
Sbjct: 600 VVEEEAEYDSLE-EAIQANNENLEELISKYEADMRKAAKELEFEKAAHYRDIIQKLKKQL 658


>gi|289750178|ref|ZP_06509556.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis T92]
 gi|289690765|gb|EFD58194.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis T92]
          Length = 758

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/739 (49%), Positives = 492/739 (66%), Gaps = 37/739 (5%)

Query: 95  SEQTMTPSVQAL-ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQ 153
           S   ++     L      +++P++ + +        ++    +    F++ + + P+GDQ
Sbjct: 26  SPHGVSAGGSRLVGVAFATEHPVVAHSEY------RAVEEIVRAGGHFEVVSPHAPAGDQ 79

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
           PAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMAPNK LAAQL +E 
Sbjct: 80  PAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMAPNKTLAAQLANEL 139

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RHSAT +LL R D +
Sbjct: 140 REMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRHSATSALLSRRDVV 199

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R D+   RG+FRV G
Sbjct: 200 VVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRNDMSFTRGSFRVRG 259

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+  +HYV     + 
Sbjct: 260 DTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIFPATHYVAGPERMA 318

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C  IENYSR++ GR 
Sbjct: 319 HAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCSGIENYSRHIDGRG 378

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
           PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EYGFRLPS  DNRPL
Sbjct: 379 PGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEYGFRLPSACDNRPL 438

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
            +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V ++  + Q++D+  
Sbjct: 439 TWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVVVKPTKGQIDDLIG 498

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL R+E++R LRLG +
Sbjct: 499 EIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLRRVELLRQLRLGDY 558

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAARNV+ +V +YAD I
Sbjct: 559 DVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAARNVSGEVHMYADKI 618

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA--- 750
           T S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D +  E   T  + +     
Sbjct: 619 TDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREADDTAVVEVGGSGR 678

Query: 751 ------------------------QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
                                      ++ + +    +K L  QM  AA +L FE AAR 
Sbjct: 679 NASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMAAARDLQFELAARF 738

Query: 787 RDEIKRLKSSPYFQGLDDS 805
           RDEI  LK     +G+D +
Sbjct: 739 RDEIADLKRE--LRGMDAA 755


>gi|57866394|ref|YP_188019.1| excinuclease ABC subunit B [Staphylococcus epidermidis RP62A]
 gi|251810192|ref|ZP_04824665.1| excinuclease ABC subunit B [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875661|ref|ZP_06284532.1| excinuclease ABC, B subunit [Staphylococcus epidermidis SK135]
 gi|293368220|ref|ZP_06614849.1| excision endonuclease subunit UvrB [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|71153395|sp|Q5HQX0|UVRB_STAEQ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|57637052|gb|AAW53840.1| excinuclease ABC, B subunit [Staphylococcus epidermidis RP62A]
 gi|251806244|gb|EES58901.1| excinuclease ABC subunit B [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295688|gb|EFA88211.1| excinuclease ABC, B subunit [Staphylococcus epidermidis SK135]
 gi|291317643|gb|EFE58060.1| excision endonuclease subunit UvrB [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329736811|gb|EGG73076.1| excinuclease ABC, B subunit [Staphylococcus epidermidis VCU028]
 gi|329737999|gb|EGG74223.1| excinuclease ABC, B subunit [Staphylococcus epidermidis VCU045]
          Length = 661

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/657 (53%), Positives = 470/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++++++ P GDQP AI +++ G++  ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKLKSEFEPQGDQPQAIQKIVDGVNEGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT SL ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +E+ ELL  LV  QY R
Sbjct: 126 HSATSSLFERDDVIIIASVSCIYGLGNPEEYKNLVVSVRVGMEMERSELLRKLVDVQYSR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ IR  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVIREREHFTI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    +  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQI GMY GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLID 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP +
Sbjct: 366 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYELEHTDE-MVEQIIRPTGLLDPKI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R    Q++D+  EI     +  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 DVRPTENQIDDLLSEIQDRVDKDERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +D +VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSDRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD IT S+Q AIDET RRRE Q+ HNK+H I P+++ +KI +VI   +  
Sbjct: 545 RNDKGEVIMYADKITDSMQYAIDETQRRREIQIAHNKEHGITPKTINKKIHDVISATVES 604

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D        +  +  ++KK+ +  ++++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 605 DETNQQQQTELPK-KMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKAE 660


>gi|242242128|ref|ZP_04796573.1| excinuclease ABC subunit B [Staphylococcus epidermidis W23144]
 gi|242234441|gb|EES36753.1| excinuclease ABC subunit B [Staphylococcus epidermidis W23144]
 gi|319401165|gb|EFV89380.1| excinuclease ABC, B subunit [Staphylococcus epidermidis FRI909]
          Length = 661

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/657 (53%), Positives = 470/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++++++ P GDQP AI +++ G++  ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKLKSEFEPQGDQPQAIQKIVDGVNEGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT SL ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +E+ ELL  LV  QY R
Sbjct: 126 HSATSSLFERDDVIIIASVSCIYGLGNPEEYKNLVVSVRVGMEMERSELLRKLVDVQYSR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ IR  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVIREREHFTI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    +  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKMKVAIQRIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQI GMY GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLID 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP +
Sbjct: 366 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYELEHTDE-MVEQIIRPTGLLDPKI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R    Q++D+  EI     +  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 DVRPTENQIDDLLSEIQDRVDKDERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +D +VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSDRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD IT S+Q AIDET RRRE Q+ HNK+H I P+++ +KI +VI   +  
Sbjct: 545 RNDKGEVIMYADKITDSMQYAIDETQRRREIQIAHNKEHGITPKTINKKIHDVISATVES 604

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D        +  +  ++KK+ +  ++++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 605 DETNQQQQTELPK-KMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKAE 660


>gi|163802842|ref|ZP_02196731.1| excinuclease ABC subunit B [Vibrio sp. AND4]
 gi|159173382|gb|EDP58205.1| excinuclease ABC subunit B [Vibrio sp. AND4]
          Length = 676

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/671 (54%), Positives = 490/671 (73%), Gaps = 11/671 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             +Q+ ++Y P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRPAI+
Sbjct: 3   KVYQLVSEYQPAGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAIL 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP+N+VEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKAFFPNNSVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V+SVS IYG+G  ESY +M++ L  GD ++Q+++L  L + QY 
Sbjct: 123 RLSATKALLERKDAIIVASVSAIYGLGDPESYLKMMLHLCRGDVIDQRDMLRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETI 377
           R D+   RG FRV G+ I+IFP+  E  A R+ MF ++++ IS F PLTG    R++   
Sbjct: 183 RNDVAFERGQFRVRGEVIDIFPAESEQDAVRIEMFDDEVDCISVFDPLTGVVKQRDLPRY 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTPR  +  A++ IK+EL +R  +L +  +LLE QR+ QR  +D+EM+   G
Sbjct: 243 TIYPKTHYVTPRERILDAIENIKDELDVRKKQLLENNKLLEEQRISQRTQFDIEMMNELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  GEPPPTLF+Y+P+D LL +DESHVT+PQI  MY+GD  RK TL
Sbjct: 303 FCSGIENYSRYLSGRAEGEPPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKETL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRP++FEE+  + P TI VSATPG++ELE+  G I +Q++RPTGL+DP
Sbjct: 363 VEFGFRLPSALDNRPMKFEEFEAVSPQTIFVSATPGNYELEKSAGEIADQVVRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EI + + +  R+L+T LTKRMAEDLTEYL+E +++VRY+HS++ 
Sbjct: 423 ELEVRPVTTQVDDLLSEIRIRSVKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 483 TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--- 734
           AARN+  + ILYAD+ITKS++ A+DET RRREKQ  HN    I PQ++K  I ++++   
Sbjct: 543 AARNIEGRAILYADSITKSMKKAMDETDRRREKQRAHNVAIGIEPQALKRNIKDIMELGD 602

Query: 735 ---PILLEDAATTNISIDAQ----QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                   +     +S  A+      +LS ++ +  +  L   M+  A +L FE AA+ R
Sbjct: 603 ITKSKRQRNTNQVPLSKVAEPSQAYEALSPQQLEREISRLEAAMYQHAQDLEFELAAQKR 662

Query: 788 DEIKRLKSSPY 798
           D+I++L++   
Sbjct: 663 DQIEQLRTQFI 673


>gi|295425570|ref|ZP_06818259.1| excision endonuclease subunit UvrB [Lactobacillus amylolyticus DSM
           11664]
 gi|295064746|gb|EFG55665.1| excision endonuclease subunit UvrB [Lactobacillus amylolyticus DSM
           11664]
          Length = 681

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/666 (50%), Positives = 468/666 (70%), Gaps = 3/666 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             ++   F++ + Y P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + 
Sbjct: 3   KRQENRKFELVSKYSPAGDQQQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIAKLN 62

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P +V++ NK L  QLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN+
Sbjct: 63  KPTLVISHNKTLVGQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAIND 122

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +ID++RH+AT +L+ERND IVV+SVSCIYG+G    Y++ ++ L  GD +E+  LL  LV
Sbjct: 123 EIDQLRHAATSALMERNDVIVVASVSCIYGLGDPREYARSVLTLHEGDEIERNVLLRDLV 182

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R DI   RG FRV GD +E+FP+     A+R+  FG++I+ I E   LTG+    
Sbjct: 183 NIQYDRNDIDFGRGRFRVRGDVVEVFPAGNSKHAYRIEFFGDEIDRIVEIDSLTGEIFGE 242

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            E+I ++  +H++T    +  A++ I +E+ +++ + E EG+LLEAQR++QR TYD+EM+
Sbjct: 243 RESISLFPATHFMTNDEQMRRALQAISQEMNVQVKKFEGEGKLLEAQRIKQRTTYDMEMM 302

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
              G    IENYSR++ GR  GEPP TL ++ P+D L+ +DESH T+P++  MY GD +R
Sbjct: 303 SEVGYTNGIENYSRHMEGRKAGEPPYTLLDFFPDDFLILIDESHATMPELRAMYNGDRNR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL +YGFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPTG
Sbjct: 363 KKTLIDYGFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERT-NHKVEQIIRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VE+R    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+YL +  I+VRY+H
Sbjct: 422 LLDPKVEVRPIEGQIDDLVGEINKRIERNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++KTLER++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+Q
Sbjct: 482 SDIKTLERMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN + +VI+YAD+IT S++ AID T RRR+ Q+E NK+H I P+++ + I + I
Sbjct: 542 TMGRAARNAHGEVIMYADSITDSMREAIDATNRRRKIQMEFNKEHGITPKTIIKPIRQAI 601

Query: 734 DPILLED--AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                 D     ++   D     L+KK+ +  + SL+ QM  AA  L+FEEAA +RD + 
Sbjct: 602 SATKQVDDKYKKSDSFADLNFDELTKKQKEKMIDSLKAQMQEAAKKLDFEEAANLRDAMM 661

Query: 792 RLKSSP 797
            L+ S 
Sbjct: 662 ELQKSV 667


>gi|56750968|ref|YP_171669.1| excinuclease ABC subunit B [Synechococcus elongatus PCC 6301]
 gi|81299374|ref|YP_399582.1| excinuclease ABC subunit B [Synechococcus elongatus PCC 7942]
 gi|81820670|sp|Q5N3H1|UVRB_SYNP6 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|123557352|sp|Q31QS4|UVRB_SYNE7 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56685927|dbj|BAD79149.1| excinuclease ABC subunit B [Synechococcus elongatus PCC 6301]
 gi|81168255|gb|ABB56595.1| Excinuclease ABC subunit B [Synechococcus elongatus PCC 7942]
          Length = 666

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/666 (53%), Positives = 467/666 (70%), Gaps = 4/666 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T FQ+Q  Y P GDQP AIAQL++ + +    Q LLG TG+GKTFT+A VI  + RPA+
Sbjct: 1   MTPFQLQARYQPMGDQPTAIAQLVEQVQAGAPYQTLLGATGTGKTFTIANVIAQVGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P TDTYI K +SINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYIPVTDTYIAKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATR+L ER D IVV+S+SCIYG+G    Y +  + L++G  +  +E+L  LV  QY
Sbjct: 121 LRHSATRNLFERRDVIVVASISCIYGLGIPSEYLKAAIPLEVGAEINMREVLRQLVDVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ +++++ +
Sbjct: 181 SRNDLESGRGRFRVKGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEILQSLDRL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP   L  A+  IKEEL  +L+ L+ EG+L+EAQRLEQR  YDLEML+  G
Sbjct: 240 NIYPARHFVTPEERLEIAIAEIKEELNQQLLTLQAEGKLVEAQRLEQRTRYDLEMLQEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L GR PG PP  L +Y P+D LL VDESHVT+PQ+ GMY GD  RK  L
Sbjct: 300 YCNGVENYARHLAGREPGSPPECLIDYFPKDWLLVVDESHVTVPQLRGMYNGDQSRKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+       I VSATPG WE+E+ +  IVEQ+IRPTG+VDP
Sbjct: 360 VDHGFRLPSAADNRPLKSEEFWEKVRQCIFVSATPGDWEIERSEEQIVEQVIRPTGVVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R    QV+D+  EI    ++  R L+T LTKRMAEDLT+YL +R ++VRY+HSE+ 
Sbjct: 420 EVFVRPTEGQVDDLLAEIQQRVRRQERALITTLTKRMAEDLTDYLSDRGVKVRYLHSEIN 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEILQDLRNGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRTERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR++N + ILYAD +T+S++ AI ET RRR  QL++N++HNI PQ + ++    I   L
Sbjct: 540 AARHINGQAILYADRMTESMEKAISETERRRRIQLDYNQRHNITPQPIIKRSSNAILSFL 599

Query: 738 LEDAATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                     ++   +Q   LS ++    +  L  QM  AA NL FEEAA+ RD IK+L+
Sbjct: 600 EVSRRLNKQELEVAVSQADDLSLEEIPNLITQLEAQMKEAAKNLEFEEAAQYRDRIKKLR 659

Query: 795 SSPYFQ 800
                +
Sbjct: 660 ERLVGR 665


>gi|310828631|ref|YP_003960988.1| excinuclease ABC subunit B [Eubacterium limosum KIST612]
 gi|308740365|gb|ADO38025.1| excinuclease ABC subunit B [Eubacterium limosum KIST612]
          Length = 653

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/659 (52%), Positives = 455/659 (69%), Gaps = 7/659 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +DY P GDQ  AI +L  GI    K Q LLGVTGSGKT+TMAKVIEA+Q+P +
Sbjct: 1   MKPFKVVSDYEPKGDQEKAIRELADGIDKGMKFQTLLGVTGSGKTYTMAKVIEAVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL +EF++FFP NAVEYFVSYYDYYQPEAYVP +D YIEK+SSIN++ID+
Sbjct: 61  IIAHNKTLAAQLANEFRSFFPENAVEYFVSYYDYYQPEAYVPHSDLYIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSAT +L ER D IVV+SVSCIYG+GS   Y  +++ L+ G   ++  ++  LV  QY
Sbjct: 121 MRHSATAALFERRDVIVVASVSCIYGLGSPIDYENLVLSLRPGMEKDRDAVIRKLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI   R  FRV GD +EI+P+     A R+  FG++I+ I+E   +TG+    +  +
Sbjct: 181 TRNDIAFERNNFRVRGDILEIYPAASSGKAVRLEFFGDEIDRITEIDTITGEITGELSHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHY T    L+ A+K I++EL  R        +L+EAQR+ QR  YDLEML+  G
Sbjct: 241 SIFPASHYTTTPEKLDVAIKGIRDELADRYDYFTGHNQLVEAQRILQRTNYDLEMLKEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENY+RY+ G  PG PP TL +Y P+D L+F DESHV+IPQI GM  GD  RK  L
Sbjct: 301 YCNGIENYTRYINGSPPGAPPYTLIDYFPKDFLIFADESHVSIPQIGGMSSGDRARKQNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL FEE+       +  SATP  +E E  +   VEQIIRPTGL+DP
Sbjct: 361 VDYGFRLPSAYDNRPLNFEEFEGKINQIVFTSATPSKYEKEHSEQ-TVEQIIRPTGLIDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R  + Q++D+  EIN    +G R+L+T LTK+MAEDLT+Y  E  IRV Y+HS++ 
Sbjct: 420 EIFVRPIKGQIDDLMSEINETVSKGNRVLVTTLTKKMAEDLTQYFKENGIRVNYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER +I+++LR+G+FDVLVGINLLREGLD+PE GLVAILDADKEG+LRS+TSLIQTIGR
Sbjct: 480 TIERTKILKELRMGEFDVLVGINLLREGLDLPEVGLVAILDADKEGYLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  KV++YAD IT+S+  AI ET RRR+ Q E N+ H I PQSV ++I + ++   
Sbjct: 540 AARNVEGKVLMYADRITRSMDYAITETNRRRKIQSEFNEAHGIIPQSVHKEIHDSLEVTK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + +   + +  D           +A + +L  +M  AA+NL FE+AA +RD IK LK +
Sbjct: 600 VAEDQASYVVEDEVM------DVEAEIMNLEAEMLTAAENLEFEKAAALRDRIKELKGN 652


>gi|315649791|ref|ZP_07902874.1| excinuclease ABC, B subunit [Paenibacillus vortex V453]
 gi|315274765|gb|EFU38146.1| excinuclease ABC, B subunit [Paenibacillus vortex V453]
          Length = 663

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/660 (53%), Positives = 476/660 (72%), Gaps = 3/660 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
               F++++++ P GDQP AI  L++G+H  +K Q LLG TG+GKTFT+A+ I  + RP 
Sbjct: 7   STKSFEIESEFQPQGDQPTAIDALVEGLHQGKKHQTLLGATGTGKTFTIAQTIAKVNRPT 66

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LAAQL SEFK FFP+N+V+YFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID
Sbjct: 67  LVIAHNKTLAAQLASEFKEFFPNNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSSINEEID 126

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++RHSAT SL ER D I+V+SVSCIYG+GS   Y ++++ L++G    + ++LS LV  Q
Sbjct: 127 KLRHSATSSLFERRDVIIVASVSCIYGLGSPHEYGELLLSLRVGMEKPRNQILSRLVDIQ 186

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R DI  +RGTFRV GD IEIFP+   + A RV +FG++IE I+E   LTG+ +   + 
Sbjct: 187 YQRNDINFVRGTFRVRGDVIEIFPASKGEHAVRVELFGDEIERITEIDVLTGELVGERDH 246

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           + I+  SH+VT   T+  A+  I+ EL+ RL  L  EG+LLEAQRLEQR  YD+EM++  
Sbjct: 247 VAIFPASHFVTREETMRVALVNIERELEERLELLRSEGKLLEAQRLEQRTRYDIEMMKEV 306

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS  LT R  G  P TL +Y P+D L  +DESHVT+PQI  MY GD  RK  
Sbjct: 307 GFCSGIENYSGPLTFREAGATPYTLLDYFPDDMLFVIDESHVTLPQIRAMYNGDRARKTV 366

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L ++GFRLPS +DNRPL+FEE+       I VSATPG +E+E C+  +VEQIIRPTGL+D
Sbjct: 367 LVDHGFRLPSALDNRPLKFEEFEEKVNQIIYVSATPGPYEMEHCE-TMVEQIIRPTGLLD 425

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +++R    Q++D+  EI+   ++  R+L+T LTK+M+EDLT+YL E  I+VRYMHS++
Sbjct: 426 PIIDVRPTEGQIDDLISEIHDRVERDERVLVTTLTKKMSEDLTDYLKEIGIKVRYMHSDI 485

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           KTLER++I+RDLRLG F VLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIG
Sbjct: 486 KTLERMQILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRSDRSLIQTIG 545

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN   KVI+Y + IT S+  AI ET RRR  Q+ +N++H I PQ++++KI +VI+  
Sbjct: 546 RAARNSEGKVIMYGNKITDSMDRAIKETERRRSIQVAYNEEHGITPQTIRKKIRDVIEAT 605

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            + +  T  +  + Q+  +SKK+ +  ++ L+ +M  AA NL FE AA +RD +  L++ 
Sbjct: 606 KVAEGKTDYLVGEGQK--MSKKERQNLIQRLQSEMKEAAKNLQFERAAELRDALLELQAE 663


>gi|116629946|ref|YP_815118.1| excinuclease ABC subunit B [Lactobacillus gasseri ATCC 33323]
 gi|122273116|sp|Q042E2|UVRB_LACGA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|116095528|gb|ABJ60680.1| Excinuclease ABC subunit B [Lactobacillus gasseri ATCC 33323]
          Length = 671

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/658 (52%), Positives = 456/658 (69%), Gaps = 2/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G    EK Q+L G TG+GKTFTMA VI  + +P +V++
Sbjct: 10  FELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
             T  L+ RND IVV+SVSCIYG+G    Y+  +V +  G  + +  LL  LV  QY R 
Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSISGGQEISRDVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A+RV  FG++I+ I E   LTG+ I   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVNSLTGEVIGEREQVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFVTNEQIMQRALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G+PP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDSARKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL Q     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQT-DHKVEQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIKGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   L+QTIGRAAR
Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD+IT S++ AID T RRR  Q++ NK+H I P+++ + I +VI      D
Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608

Query: 741 AATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                 S  D     L+KK+ +  +K+L  QM  AA  L+FEEAA +RD I  L+   
Sbjct: 609 EKENKESFADLNFDELTKKQKQTMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLQKQV 666


>gi|300361294|ref|ZP_07057471.1| excision endonuclease subunit UvrB [Lactobacillus gasseri JV-V03]
 gi|300353913|gb|EFJ69784.1| excision endonuclease subunit UvrB [Lactobacillus gasseri JV-V03]
          Length = 671

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/658 (52%), Positives = 457/658 (69%), Gaps = 2/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G  + EK Q+L G TG+GKTFTMA VI  + +P +V++
Sbjct: 10  FELVSKFQPAGDQEQAIKKLTDGFENGEKAQILEGATGTGKTFTMANVIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
             T  L+ RND IVV+SVSCIYG+G    Y+  +V +  G  + +  LL  LV  QY R 
Sbjct: 130 KTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSISEGQEISRDVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A+RV  FG++I+ I E   LTG+ I   E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVDSLTGEVIGEREQVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    +  A+  IK+E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFVTNEQIMQRALASIKDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  G+PP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL Q     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQT-DHKVEQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIKGQIDDLVGEINKRIDRDERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   L+QTIGRAAR
Sbjct: 489 RLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD+IT S++ AID T RRR  Q++ NK+H I P+++ + I +VI      D
Sbjct: 549 NSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSD 608

Query: 741 AATTNISIDA-QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                 S D      L+KK+ +  +K+L  QM  AA  L+FEEAA +RD I  L+   
Sbjct: 609 EKENKESFDDLNFDELTKKQKQTMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLQKQV 666


>gi|254373124|ref|ZP_04988613.1| excinuclease ABC subunit B [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570851|gb|EDN36505.1| excinuclease ABC subunit B [Francisella novicida GA99-3549]
          Length = 668

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/667 (53%), Positives = 479/667 (71%), Gaps = 7/667 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + T Y P+GDQP AI  L+ GI++  + Q+LLGVTGSGKT+TMA VI+  Q+P +
Sbjct: 1   MNKFNLVTKYAPAGDQPQAIQSLVDGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++
Sbjct: 61  ILAHNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY
Sbjct: 121 MRLSATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +K++++   
Sbjct: 181 SRNDMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+ ++HYV  +      ++ IK+ELK R+   EKEG+LLEAQR+EQR  YD+EM++  G
Sbjct: 241 TIFPSTHYVASKERKEIVIEEIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESH T+PQ  GMY+GD  RK+ L
Sbjct: 301 YCTGIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHATLPQFGGMYKGDLSRKSNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   V+Q+IRPTGL+DP
Sbjct: 361 VNYGFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R    QVED   EIN A  +  R+L+T LTK+MAE+LTEYL E  + VRY+HS++ 
Sbjct: 420 EVFVRPVAIQVEDALSEINKAIAKEERVLITTLTKKMAENLTEYLSEHGVNVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--P 735
            ARN N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D  P
Sbjct: 540 VARNQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSP 599

Query: 736 ILLEDAATTNISIDAQQLSLSK----KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            + + A   N+ +    + +S      +    +K+L K+M   A  L FE+A  IRD+I 
Sbjct: 600 EIQKRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKIT 659

Query: 792 RLKSSPY 798
            +K    
Sbjct: 660 EIKQKFI 666


>gi|116748247|ref|YP_844934.1| excinuclease ABC subunit B [Syntrophobacter fumaroxidans MPOB]
 gi|116697311|gb|ABK16499.1| Excinuclease ABC subunit B [Syntrophobacter fumaroxidans MPOB]
          Length = 691

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/668 (56%), Positives = 473/668 (70%), Gaps = 3/668 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           S ++  F +Q+++ P+GDQP AI +L+  I    + Q LLGVTGSGKTFTMA VI+ +++
Sbjct: 22  SSNMVSFSLQSNWPPTGDQPEAIDRLVTAIEKGVREQTLLGVTGSGKTFTMAHVIQRVRK 81

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P++V+APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYI K+SSINE 
Sbjct: 82  PSLVVAPNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPQTDTYIAKDSSINET 141

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ID+MRHSATRSLLER D I+V+SVSCIYG+GS E+Y  M +QLK    + ++++L  LV+
Sbjct: 142 IDKMRHSATRSLLERRDVIIVASVSCIYGLGSPETYQDMQLQLKTNLRISREQVLRKLVE 201

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY+R D    RGTFR  GD +E+FP++ ED A R+  FG++++ I E  PLTG+ +R +
Sbjct: 202 IQYERSDDDFHRGTFRARGDVVEVFPAYEEDRALRIEFFGDEVDSIKEIDPLTGKTVRFL 261

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           +   IY  +HYVT R  L  A+K I+ EL  RL E  +EG+L+EAQRLE+R   DLEML 
Sbjct: 262 QRADIYPGTHYVTSRDNLERAVKAIQFELSERLEEFHREGKLVEAQRLEERTRLDLEMLL 321

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSR+L GR  G  P TL +Y P+D LLF+DESH+++PQI GMYRGD  RK
Sbjct: 322 ELGYCNGIENYSRHLDGRKAGSAPATLVDYFPDDWLLFIDESHISVPQIRGMYRGDRARK 381

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL  YGFRLPS +DNRPL F E+       + VSATPG +EL +    +VEQIIRPTGL
Sbjct: 382 ETLVRYGFRLPSALDNRPLSFHEFEKKLRQAVYVSATPGPYELMKAGSHVVEQIIRPTGL 441

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           VDP +E+R A  QV+D+  +I      G R+L+T LTKRMAEDLTEYL E NIRVRYMHS
Sbjct: 442 VDPRIEVRPADHQVDDLVGQIRRQVAAGRRVLVTTLTKRMAEDLTEYLVELNIRVRYMHS 501

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ERIE++RDLRLG++DVLVGINLLREGLDIPE  LVAILDAD EGFLRS+ SLIQT
Sbjct: 502 DINTVERIELVRDLRLGEYDVLVGINLLREGLDIPEVSLVAILDADNEGFLRSERSLIQT 561

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
            GRAARNVN  VILYA+ +T S++ AI+ET RRR  QLE+N  H I P++V++ I +++ 
Sbjct: 562 CGRAARNVNGSVILYANHVTDSMRRAIEETERRRRIQLEYNLAHGITPRTVEKDITDILA 621

Query: 735 PILLEDAATT---NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                DA           A+  S         ++ L K M  AA  L FE AA +RD IK
Sbjct: 622 DYRDRDAPAPPDFASEARAEFESAPAGSPDERIRQLEKAMKEAAAELEFERAAHLRDRIK 681

Query: 792 RLKSSPYF 799
            L+     
Sbjct: 682 FLRRQQLL 689


>gi|257454228|ref|ZP_05619498.1| excinuclease ABC subunit B [Enhydrobacter aerosaccus SK60]
 gi|257448401|gb|EEV23374.1| excinuclease ABC subunit B [Enhydrobacter aerosaccus SK60]
          Length = 705

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/664 (56%), Positives = 479/664 (72%), Gaps = 8/664 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F+M T++ PSGDQP AIA+L+ G+      QLLLGVTGSGKT+TMAKVI   QRP I+
Sbjct: 39  KPFEMVTEFEPSGDQPQAIAKLVDGVDKGMHGQLLLGVTGSGKTYTMAKVIAQCQRPTII 98

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+M
Sbjct: 99  MAHNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSAINDHIDQM 158

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SATR+LLER D I+++SVSCIYG+G  ESY +M++ + +GD +++  +L  LV+ QY 
Sbjct: 159 RLSATRALLERRDAIIIASVSCIYGLGDPESYLKMLLHIVVGDKIDRTAMLKRLVELQYT 218

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R ++   RGT+R+ G+ ++I+P+  E +A R+SMF +++E+I+ F PLTG+ +R+V  I 
Sbjct: 219 RNELDFGRGTYRLRGEVLDIYPAESEQLAVRISMFDDEVEKITWFDPLTGKNVRSVPRIT 278

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYVTPR  L  A   IK EL+ RL       +L+EAQR+++R TYDLEM++  G 
Sbjct: 279 IYPKSHYVTPRDKLERASGTIKAELEQRLEYFRAHDKLIEAQRIKERTTYDLEMIQQLGY 338

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR  GE PPTLF+YIP D+LLF+DESHVT+PQ+  MY+GD  RK TL 
Sbjct: 339 CNGIENYSRHLSGRPAGEAPPTLFDYIPPDALLFIDESHVTVPQVGAMYKGDRSRKETLV 398

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            YGFRLPS MDNRPL FEEW  + P+T+ VSATP  +ELE  +  IVEQ++RPTGLVDP 
Sbjct: 399 NYGFRLPSAMDNRPLMFEEWERITPSTVYVSATPAQYELEHSEQ-IVEQVVRPTGLVDPI 457

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR   TQV+DV  EIN+   +  R+L+T LTKRMAEDLT YL E NI+V Y+HS++ T
Sbjct: 458 LEIRPVLTQVDDVLSEINIRKAKDERVLITTLTKRMAEDLTGYLKEYNIKVAYLHSDIDT 517

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER++II +LR G  DVLVGINLLREGLD+PE  LVAI DADKEGFLRS+ SLIQTIGRA
Sbjct: 518 VERMKIIHELRTGVHDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERSLIQTIGRA 577

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           AR+VN K ILYAD+IT S+Q AI+ET RRR KQ+ +N++H I P S + +I + ID    
Sbjct: 578 ARHVNGKAILYADSITPSMQKAIEETERRRAKQMAYNEEHGITPTSARRQITDKIDTGEA 637

Query: 739 EDAATTNISIDAQQLS-------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           E                       S       +  L K+M   + +L FEEAA++RD++ 
Sbjct: 638 EAPNDNQAIAVTHAFPDVDISILRSPDLLAKEIARLEKEMKALSRDLKFEEAAKVRDKVV 697

Query: 792 RLKS 795
            L+ 
Sbjct: 698 GLRE 701


>gi|291009196|ref|ZP_06567169.1| excinuclease ABC subunit B [Saccharopolyspora erythraea NRRL 2338]
          Length = 717

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/704 (50%), Positives = 486/704 (69%), Gaps = 28/704 (3%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
               +++  +    F+M +DY P+GDQP AI  L + I+S E   +LLG TG+GK+ T A
Sbjct: 14  EFRPVSDIPRTGGRFRMVSDYQPAGDQPQAIDDLERRINSGETDVVLLGATGTGKSATTA 73

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            +IE +QRP +V+ PNK LAAQ  +E + FFP NAVEYFVSYYDYYQPEAYVP+TDTYIE
Sbjct: 74  WLIERVQRPTLVLEPNKTLAAQFANELRGFFPDNAVEYFVSYYDYYQPEAYVPQTDTYIE 133

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+SSINE ++R+RHSAT +LL R DC+VVSSVSCIYG+G+ +SY    +QL++G   ++ 
Sbjct: 134 KDSSINEDVERLRHSATSNLLSRRDCVVVSSVSCIYGLGTPQSYLDRSIQLQVGGETDRD 193

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
            LL +LV  QY R DI   RGTFRV GD++E+ P++ E++A R+ MFG++I+ +   +PL
Sbjct: 194 VLLRALVDVQYTRNDIAFARGTFRVRGDTVEVIPAY-EELAVRIEMFGDEIDRLYYLHPL 252

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG+ +R V+ ++I+  +HYV     +  A++ I+ EL  +L +LEK+ +LLEAQRL  R 
Sbjct: 253 TGEVVREVDELRIFPATHYVAGPERMEKAIRSIEAELDEQLAKLEKQNKLLEAQRLRMRT 312

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
            YD+EM+   G C  IENYSR++  R  G  P TL +Y P+D LL +DESHVT+PQ+ GM
Sbjct: 313 QYDIEMMRQVGFCSGIENYSRHVDDRPAGSAPATLLDYFPDDFLLIIDESHVTVPQVGGM 372

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           Y GD  RK TL E+GFRLPS +DNRPL +EE+      T+ +SATPG +E+ Q  G  VE
Sbjct: 373 YEGDASRKRTLVEHGFRLPSALDNRPLTWEEFADRIGQTVYLSATPGPYEMGQAGGEFVE 432

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q+IRPTGLVDP V ++    Q++D+  EI   A++  R+L+T LTK+MAEDLT+Y  E  
Sbjct: 433 QVIRPTGLVDPEVVVKPTEGQIDDLVHEIRERAERDERVLVTTLTKKMAEDLTDYFLELG 492

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           IRVRY+HSEV TL R+E++R LRLG++DVLVGINLLREGLD+PE  LV+ILDADKEGFLR
Sbjct: 493 IRVRYLHSEVDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLR 552

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S TSLIQTIGRAARNV+ +V +YAD IT S++ AIDET RRREKQ+ +N++  I+PQ ++
Sbjct: 553 SGTSLIQTIGRAARNVSGQVHMYADRITDSMRHAIDETNRRREKQIAYNEEKGIDPQPLR 612

Query: 727 EKIMEVIDPILLEDAATTNISI-------------------------DAQQLSLSKKKGK 761
           +KI +++D +  E   T  +++                         D    S+ + +  
Sbjct: 613 KKIADILDRVYSESEDTEEVAVGGSGRNVSRGKKPSGEAVGSAGLLEDRDIKSMPRAELA 672

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             ++ L  QM  AA +L FE AAR+RDEI+ LK     +G+D +
Sbjct: 673 DLVQQLNDQMMSAARDLQFELAARLRDEIQDLKKE--LRGMDAA 714


>gi|294791677|ref|ZP_06756825.1| excinuclease ABC subunit B [Veillonella sp. 6_1_27]
 gi|294456907|gb|EFG25269.1| excinuclease ABC subunit B [Veillonella sp. 6_1_27]
          Length = 725

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/688 (51%), Positives = 481/688 (69%), Gaps = 28/688 (4%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    F+++  + P+GDQP AI  L +GI   E  Q+LLG TG+GKTFTMAKVIEA+Q+P
Sbjct: 9   EGGQPFKVEAPFAPTGDQPTAIQSLTEGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKP 68

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +++A NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++I
Sbjct: 69  TLIIAHNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEI 128

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SL ER D I+V+SVSCIYG+G  E YS +++ L++G +  + E+LS LV  
Sbjct: 129 DKLRHSATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQTKSRDEILSKLVDI 188

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D+  IRGTFRV GD+I+IFP+   + A RV +FG++I+ + E   LTG+ I   +
Sbjct: 189 QYTRNDMNFIRGTFRVQGDTIDIFPAAYSERAIRVELFGDEIDRLVEVDSLTGEVIAERK 248

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + +Y  SHYVT +  +N A++ I+ EL  +L +L+   RLLEAQRLEQR  YD+EM++ 
Sbjct: 249 HVAVYPASHYVTTKEKMNIAVERIEAELDEQLAKLKAADRLLEAQRLEQRTRYDIEMMQE 308

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR+++ R  GE P TL +Y P+D L+ VDESHVT+PQI  MY GD  RK 
Sbjct: 309 MGYCSGIENYSRHMSERKAGEAPFTLIDYFPDDFLIMVDESHVTMPQIRAMYNGDRARKE 368

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           +L EYGFRLPS +DNRPL+F+E+       + VSATPG +E+E  +  I EQIIRPTGL+
Sbjct: 369 SLIEYGFRLPSALDNRPLQFDEFVERINQIVYVSATPGPYEME-VETNIAEQIIRPTGLL 427

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR  + Q++D+  EI+  A +  R+L+T LTK+MAEDLTE+L E  +RVRY+HS+
Sbjct: 428 DPSIEIRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSD 487

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + T+ER EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T++IQTI
Sbjct: 488 IVTIERAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTI 547

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNVN  VI+YAD +T S+Q AIDET RRR  Q  +N +HNI P+SV + + E+I+ 
Sbjct: 548 GRAARNVNGHVIMYADRVTGSMQRAIDETDRRRAVQEAYNIEHNITPKSVSKDVKELIEL 607

Query: 736 ILLED---------------------------AATTNISIDAQQLSLSKKKGKAHLKSLR 768
             +E+                            +    +   +   ++ ++    ++ L 
Sbjct: 608 TKIEEDMVTDGKGLSSKKGKQKKSSEGMDHGHESYVQDTSAPKVADITPEELYNKIEELD 667

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +QM  AA  L FE AA++RD++  L+  
Sbjct: 668 RQMKAAAKQLEFETAAKLRDQLGVLRQQ 695


>gi|307824855|ref|ZP_07655078.1| excinuclease ABC, B subunit [Methylobacter tundripaludum SV96]
 gi|307734213|gb|EFO05067.1| excinuclease ABC, B subunit [Methylobacter tundripaludum SV96]
          Length = 670

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/663 (55%), Positives = 482/663 (72%), Gaps = 9/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI  L++G+   E  Q LLGVTGSGKTFT+A VI  +QRPA++MA
Sbjct: 5   FKLHSRFQPAGDQPTAIQALVEGLSDGEVHQTLLGVTGSGKTFTIANVINQVQRPAMIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP N+VEYFVSYYDYYQPEAYVP +DT+I+K+++INE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKEFFPENSVEYFVSYYDYYQPEAYVPASDTFIDKDAAINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER+D IVV++VS IYG+G  ESY +M++ L  GD + Q+++L  L + QY R 
Sbjct: 125 SATKALIERDDTIVVATVSAIYGLGEPESYFKMVLHLVKGDMINQRDILRRLAEMQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + R T+RV G+ I++FP+  +  A R+ +F +++E +S F PLTG+ IR +    IY
Sbjct: 185 DIDLRRATYRVRGEVIDVFPAESDSEALRIELFDDEVERLSLFDPLTGEIIRRLARYTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  L  A++ IK ELK RL +L    +L+EAQRLEQR  +D+EM+   G C 
Sbjct: 245 PKSHYVTPREQLLEAVEAIKVELKERLEQLRSLDKLVEAQRLEQRTLFDIEMILEVGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR+ GE PPT+F+Y+ +++L+ +DESHV +PQI  MY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRSAGESPPTMFDYLRDNALVIIDESHVAVPQIGAMYKGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+    P  I VSATPG +E E   G+  EQ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLMFNEFELKAPQRIYVSATPGPYEREHS-GVFAEQVVRPTGLLDPVVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EIN       R+L+T LTKRM+EDLTEYL E  +RVRY+HS++ T+E
Sbjct: 424 VRPATTQVDDLLSEINKRVVVKERVLVTTLTKRMSEDLTEYLMEHGVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SL+QTIGRAAR
Sbjct: 484 RVEIIRDLRLGQFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSVVSLVQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K ILY D ITKS+Q AIDET RRREKQ + N +H+I P+++ + + +++   +   
Sbjct: 544 NVNGKAILYGDKITKSMQQAIDETDRRREKQHQFNIEHHIEPKTIFKSVTDIMQVSIPGA 603

Query: 741 AATTNISIDAQ--------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             T+   +  +        + +++ K+    LK L   M+  A NL FE+AA+IRDEIK 
Sbjct: 604 GMTSANKLLDKVAEFPADYKAAMTPKQASKKLKQLEDTMYQHAKNLEFEQAAKIRDEIKV 663

Query: 793 LKS 795
           L+ 
Sbjct: 664 LQE 666


>gi|300214835|gb|ADJ79251.1| UvrABC system protein B [Lactobacillus salivarius CECT 5713]
          Length = 666

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/657 (54%), Positives = 475/657 (72%), Gaps = 1/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L +GI   EK Q+L+G TG+GKTFT++ VI+ + +P +V+A
Sbjct: 10  FELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKNVNKPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y +  + L++G  +E+ +LL+ L+  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPHEYREHTISLRVGQEIERNKLLNDLIDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E  PLTG+ I + E I I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDESALRVEFFGDEIDRIREIDPLTGETIADREHIAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L TA++ I++EL+ R  EL+ EG+LLEAQRL+QR TYD+EML+  G C 
Sbjct: 250 PATHFMTNEERLGTAIEGIQQELEERTTELKNEGKLLEAQRLQQRTTYDIEMLKEMGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P TL ++ P+D L+ VDESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRKPGEAPYTLLDFFPDDFLIVVDESHVTMPQVRGMYNGDRARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL  EE+       I +SATPG +E E+    +V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLTREEFEKHVNQIIYMSATPGPYEQEKT-SHVVQQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   +   R+ +T LTK+MAEDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 429 VRPIMGQMDDLVGEINKRVELNERVFVTTLTKKMAEDLTDYFKEMGIKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RDLR+GKFDVLVGINLLREG+D+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTEIVRDLRMGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD +T S++ AI ET RRR  Q ++NK HNI P+++ + I   I      +
Sbjct: 549 NASGHVIMYADDVTPSMEAAIKETKRRRSIQEQYNKDHNIIPKTIIKPIRAAISISSKVN 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            + TNIS       +SKK+    + +L +QM  AA  L+FEEAA +RD +  LK+  
Sbjct: 609 KSDTNISDTVDFADMSKKEQLEMISNLEEQMREAAKKLDFEEAATLRDTVMELKAQI 665


>gi|257064686|ref|YP_003144358.1| Excinuclease ABC subunit B [Slackia heliotrinireducens DSM 20476]
 gi|256792339|gb|ACV23009.1| Excinuclease ABC subunit B [Slackia heliotrinireducens DSM 20476]
          Length = 698

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/660 (55%), Positives = 489/660 (74%), Gaps = 4/660 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++   Y PSGDQP AI +L +GI S  + Q LLGVTGSGKTFTMAK IEA+QRP +VM
Sbjct: 5   PFKVVAPYEPSGDQPQAIEKLAEGIESGLRYQTLLGVTGSGKTFTMAKTIEAIQRPTLVM 64

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQL +E K FFP+NAV YFVSYYDYYQPEAYVP+TDT+IEK++SINE+++++R
Sbjct: 65  APNKTLAAQLAAELKEFFPNNAVVYFVSYYDYYQPEAYVPQTDTFIEKDASINEEVEKLR 124

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT SLL R D IVV+SVSCIYGIGS   Y+ M V +      ++ +++  L+  QY R
Sbjct: 125 HAATSSLLSRRDIIVVASVSCIYGIGSPMDYAGMAVFVDKEVPQDRDDVIYKLIDIQYDR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D  + RGTFRV GD++++FP + ++   R+  +G++IE ISE   +TG+ + + E + I
Sbjct: 185 NDYELKRGTFRVRGDALDVFPPYADN-PVRIEFWGDEIERISEIDNVTGEVLGSYEALPI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SHYVT RP ++ A+  I++EL+ RL + + EG+LLEAQRLE R+ YDLEMLET G C
Sbjct: 244 WPASHYVTARPKMDKALNTIQDELRERLQQFKDEGKLLEAQRLEMRVNYDLEMLETMGFC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L GR PGEPP TL +Y P+D +  +DESHVT+PQI GM+ GD  RK TLAE
Sbjct: 304 SGIENYSRHLDGREPGEPPYTLIDYFPDDFVCIIDESHVTVPQIRGMHEGDRSRKVTLAE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPSC+DNRPLRF+E+    P  I VSATPG +E E+     VEQIIRPTGL+DP +
Sbjct: 364 HGFRLPSCLDNRPLRFDEFEDRIPQFIYVSATPGDYE-EKVTQQQVEQIIRPTGLLDPEI 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   +Q++DV DE     ++  R+L+T LTK+MAEDLT++L +R I+ RYMHS++ TL
Sbjct: 423 EVRPIASQIDDVIDEAKERGERNERVLITTLTKKMAEDLTDHLLDRGIKARYMHSDIGTL 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+RDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR+  SLIQTIGRAA
Sbjct: 483 ERVEILRDLRKGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNHRSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+ KVI+YAD +T S+ LAI ET RRR  Q+++N++H I PQ++++ I +V+  I   
Sbjct: 543 RNVSGKVIMYADKLTDSMNLAITETRRRRAVQMQYNEEHGIEPQTIRKAINDVMGFITDA 602

Query: 740 DAATTNISIDAQQ--LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           D      S++  +    +S+ +    + S+ ++M  A+ N++FEEAAR+RD++ +L++  
Sbjct: 603 DGNEVGDSVEVNKVLAEMSRAEVMRVISSMEEEMAAASVNMDFEEAARLRDQVVKLRAQV 662


>gi|326790740|ref|YP_004308561.1| excinuclease ABC subunit B [Clostridium lentocellum DSM 5427]
 gi|326541504|gb|ADZ83363.1| excinuclease ABC, B subunit [Clostridium lentocellum DSM 5427]
          Length = 660

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/661 (51%), Positives = 476/661 (72%), Gaps = 2/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ +++ P+GDQP AI +L+  I+   K Q LLGVTGSGKTFTMA +IE +Q+P +
Sbjct: 1   MSKFEIVSEFKPTGDQPQAITELVTSINEGHKYQTLLGVTGSGKTFTMANIIEKVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+NE+ID+
Sbjct: 61  ILAHNKTLAAQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D IV++SVSCIYG+G    YS+ ++ ++ G  +++ ++L  L++ QY
Sbjct: 121 LRHSATAALCEREDVIVIASVSCIYGLGDPIDYSEQVLSIRTGMEMDRDDVLRKLIQIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+  +R +FRV GD++EI P+ + + A R+  FG++I+ I+E  PLTG      E +
Sbjct: 181 TRNDMDFVRASFRVRGDTVEIIPAGMSEKAIRIEFFGDEIDRIAEIDPLTGSVFGYREHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  S Y      +  A++ I++EL+ RL E ++E +LLEAQRL QR  +D+EML   G
Sbjct: 241 VIFPASFYAISSEKMEVALQRIEKELEERLKEFKEEDKLLEAQRLSQRTQFDMEMLREMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L+GR  GE P TL +Y P+D L+ +DESH+TIPQ+  MY GD  RK  L
Sbjct: 301 YCSGVENYSRHLSGREEGETPFTLLDYFPKDFLMIIDESHMTIPQVRAMYNGDRARKTVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL+F+E+       + VSATP  +ELE     I EQ+IRPTGL+DP
Sbjct: 361 VDYGFRLPSALDNRPLKFDEFESKINQLLFVSATPAQYELEHSLA-IAEQLIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R  + Q++D+  EIN    +G ++++T LTKRMAEDLT Y+ E  ++++Y+HS++ 
Sbjct: 420 VIELRPVKGQIDDLLGEINQIVAKGEKVMITTLTKRMAEDLTTYMGELGVKIKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEIIRDLR+  FDVLVGINLLREGLDIPE  L+AILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERIEIIRDLRMDVFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N +VI+YAD +TKS++ AI ET RRR+ Q E+N+ H I P+++K+KI ++I    
Sbjct: 540 AARNANGRVIMYADQVTKSMKNAISETARRRQIQEEYNEAHGIVPETIKKKIRDLIIATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             D     +  +    S+SK++ +  +K + K M  AA  L FE+AA +RD + +LK + 
Sbjct: 600 TAD-KEKGLLAEKDPESMSKEELEKTMKKVEKDMKKAATELQFEKAAELRDVLIKLKQTY 658

Query: 798 Y 798
            
Sbjct: 659 L 659


>gi|227893198|ref|ZP_04011003.1| excinuclease ABC subunit B [Lactobacillus ultunensis DSM 16047]
 gi|227864967|gb|EEJ72388.1| excinuclease ABC subunit B [Lactobacillus ultunensis DSM 16047]
          Length = 682

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/659 (51%), Positives = 465/659 (70%), Gaps = 4/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + +P +V+ 
Sbjct: 10  FELVSKFKPAGDQQQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIANLNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L+ERND +VV+SVSCIYG+G  + Y++ ++ +  G+  E+  LL  LV  QY R 
Sbjct: 130 ATTSALMERNDVVVVASVSCIYGLGDPKEYARSVLMIHEGEEYERNTLLRDLVNLQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A+R+  FG++I+ I E   LTG+ I   E+I ++
Sbjct: 190 DIDFQRGRFRVRGDIVEIFPAGNSDHAYRIEFFGDEIDRIVEVDSLTGEVIGERESISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I +E+K+++ + E EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNDEQMRRALKAISKEMKLQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDRNRKKTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +EL +     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELART-NHKVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+QT+GRAAR
Sbjct: 489 RMRILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YADTIT S++ AI  T RRR+ Q E NK+H I P+++ + I +VI      D
Sbjct: 549 NANGEVIMYADTITDSMKAAIKATKRRRKIQKEFNKEHGITPKTIIKPIQDVISITKPTD 608

Query: 741 AATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +    S    D     L+ K+ K  +K+L++QM  AA  L+FEEAA +RD I  L+SS
Sbjct: 609 DSKKEKSDSFADLNFDELTAKQKKTMIKNLQEQMKEAAKKLDFEEAANLRDAIMELQSS 667


>gi|104773722|ref|YP_618702.1| excinuclease ABC subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|16124250|gb|AAL14788.1| UvrB [Lactobacillus delbrueckii]
 gi|103422803|emb|CAI97444.1| Excinuclease ABC, subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 680

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/665 (51%), Positives = 470/665 (70%), Gaps = 2/665 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +D   F++ + Y P+GDQ  AI QL  G  + +K Q+L G TG+GKT+TMA VI  M 
Sbjct: 3   KRQDNNKFELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAKMN 62

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P +V+  NK L  QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SSIN+
Sbjct: 63  KPTLVITHNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSIND 122

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +ID++RH+AT +L+ RND IVV+SVSCIYG+G    Y   ++ +  G   E+  LL  LV
Sbjct: 123 EIDQLRHAATSALMSRNDVIVVASVSCIYGLGDPREYEASVLNVYTGQEYERNTLLRDLV 182

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R DI + RG FRV GD +E+FP+   D A+R+  FG++I+ I E  PLTG+    
Sbjct: 183 NIQYDRNDIDLQRGRFRVRGDVVEVFPAGYSDRAYRIEFFGDEIDRIVEVDPLTGEVHGV 242

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            ++I ++  +H++T    L  A+  IK E+  ++ + EKEG+LLEA+R++QR TYDLEML
Sbjct: 243 RDSISLFPATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLEML 302

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
              G    IENYSR +  R  GEPP TL ++ P+DSL+ +DESH T+P+I  MY GD +R
Sbjct: 303 REVGYTNGIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDRNR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL +YGFRLPS +DNRPL+ EE+       + VSATPG +EL +    IVEQ+IRPTG
Sbjct: 363 KQTLIDYGFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNRT-SRIVEQVIRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP +E+R    Q++D+  EINL  ++  R+ +T LTK+MAEDLT+YL +  I+VRY+H
Sbjct: 422 LLDPKIEVRPIEGQIDDLVAEINLRIERRERVFVTTLTKKMAEDLTDYLKDLGIKVRYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++KTLER++IIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   LIQ
Sbjct: 482 SDIKTLERMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLIQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N +VI+YAD IT S+++AIDET RRR  Q+++N++H I P+++ + + ++I
Sbjct: 542 TMGRAARNANGEVIMYADRITDSMKMAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDMI 601

Query: 734 DPILLEDAATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             +  +  A  + S  D     L+ K+ K  + +L++QM  AA  L+FE AA +RD I  
Sbjct: 602 SVVKADKEAEKSDSFADLNFDELTAKQKKQMIANLKEQMQDAAKRLDFESAANLRDAIIE 661

Query: 793 LKSSP 797
           L+ S 
Sbjct: 662 LEGSV 666


>gi|56708262|ref|YP_170158.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670733|ref|YP_667290.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457382|ref|ZP_03665855.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370747|ref|ZP_04986752.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875082|ref|ZP_05247792.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|81820767|sp|Q5NFN4|UVRB_FRATT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56604754|emb|CAG45832.1| DNA excision repair enzyme, subunit B (UvrABC system protein B)
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110321066|emb|CAL09215.1| DNA excision repair enzyme, subunit B (UvrABC system protein B)
           [Francisella tularensis subsp. tularensis FSC198]
 gi|151568990|gb|EDN34644.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841081|gb|EET19517.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159489|gb|ADA78880.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 668

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/667 (53%), Positives = 478/667 (71%), Gaps = 7/667 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + T Y P+GDQP AI  L+ GI++  + Q+LLGVTGSGKT+TMA VI+  Q+P +
Sbjct: 1   MNKFNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAY+  +DTYIEK+SS+NE I++
Sbjct: 61  ILAHNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYIAASDTYIEKDSSVNEHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY
Sbjct: 121 MRLSATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +K++++   
Sbjct: 181 SRNDMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+ ++HYV  +      ++ IK+ELK R+   EKEG+LLEAQR+EQR  YD+EM++  G
Sbjct: 241 TIFPSTHYVASKERKEIVIEDIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L+GR PG PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RK+ L
Sbjct: 301 YCTGIENYSRLLSGRAPGYPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   V+Q+IRPTGL+DP
Sbjct: 361 VNYGFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R    QVED   EIN A  +  R+L+T LTK+M E+LTEYL E  + VRY+HS++ 
Sbjct: 420 EVFVRPVAIQVEDALSEINKAIAKEERVLITTLTKKMVENLTEYLSEHGVNVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--P 735
            ARN N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D  P
Sbjct: 540 VARNQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSP 599

Query: 736 ILLEDAATTNISIDAQQLSLSK----KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            + + A   N+ +    + +S      +    +K+L K+M   A  L FE+A  IRD+I 
Sbjct: 600 EMQKRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKIT 659

Query: 792 RLKSSPY 798
            +K    
Sbjct: 660 EVKQKFI 666


>gi|315924531|ref|ZP_07920750.1| excision endonuclease subunit UvrB [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622061|gb|EFV02023.1| excision endonuclease subunit UvrB [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 662

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/665 (51%), Positives = 466/665 (70%), Gaps = 7/665 (1%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
              ++   F++ +DY P GDQ  AI ++ KGI    K Q LLGVTGSGKT+TMAKVIEA+
Sbjct: 4   KMERENQPFEVVSDYEPKGDQGQAIEKIAKGIKKGLKYQTLLGVTGSGKTYTMAKVIEAV 63

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           Q+P +++A NK LAAQL +EF++FFP+NAVEYFVSYYDYYQPEAYVP  D YIEK+SSIN
Sbjct: 64  QKPTLIIAHNKTLAAQLANEFRSFFPNNAVEYFVSYYDYYQPEAYVPGRDIYIEKDSSIN 123

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           ++ID++RHSAT +L ER D I+++SVSCIYG+GS   Y  +++ L+ G   ++ +++  L
Sbjct: 124 DEIDKLRHSATAALFERRDVIIIASVSCIYGLGSPIDYENLVLSLRPGMVKDRDDIIRKL 183

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V+ QY R DIG  R  FRV GD +EIFP+   D A R+  F ++I+ I+E   +TG+   
Sbjct: 184 VEIQYTRNDIGFERNNFRVRGDVLEIFPAASTDKAVRIEFFDDEIDRITEINVITGEITG 243

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            +  I I+  SHY T    L +A+K I+EEL  R     +  RL+EAQR+ QR  YDLEM
Sbjct: 244 ELSHISIFPASHYTTTPERLESAIKGIREELGERYAWFNEHNRLVEAQRILQRTNYDLEM 303

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L+  G C  IENY+R++ G + G PP TL +Y P+D L+  DESHV+IPQI GM  GD  
Sbjct: 304 LQEMGYCTGIENYTRHINGISAGSPPYTLIDYFPDDFLMIADESHVSIPQIGGMSAGDRA 363

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L +YGFRLPS  DNRPL F+E+       +  +ATPG +E +  +  IVEQ+IRPT
Sbjct: 364 RKKNLVDYGFRLPSAYDNRPLTFQEFEGKIHQMVFTTATPGPYEKKHSEQ-IVEQLIRPT 422

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP + +R  + Q++D+  EI        R+L+T LTK+MAEDLT+YL +  +RVRY+
Sbjct: 423 GLLDPKISVRPIKGQIDDLLGEIRETTSHRERVLITTLTKKMAEDLTDYLKDNGVRVRYL 482

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++ T+ER+EI+RDLRLGKFDVLVGINLLREGLD+PE GLVA+LDADKEG+LRS+TSL+
Sbjct: 483 HSDIDTIERMEILRDLRLGKFDVLVGINLLREGLDLPEVGLVAVLDADKEGYLRSETSLV 542

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN + +VI+YAD ITKS+  AI ET RRR  Q  +N+KH+I P++V + I +V
Sbjct: 543 QTIGRAARNADGRVIMYADNITKSMDRAITETNRRRRIQQAYNEKHHITPKTVVKDIHDV 602

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           I+   + +        +A    +  +  +  +  LRKQM  AA +L FE+AA +RD+I+R
Sbjct: 603 IEVTKVAE------KPEAYDAKVQPEPAEMDINELRKQMQEAAAHLEFEKAAALRDQIQR 656

Query: 793 LKSSP 797
           L+++ 
Sbjct: 657 LEAAV 661


>gi|297618025|ref|YP_003703184.1| excinuclease ABC subunit B [Syntrophothermus lipocalidus DSM 12680]
 gi|297145862|gb|ADI02619.1| excinuclease ABC, B subunit [Syntrophothermus lipocalidus DSM
           12680]
          Length = 667

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/657 (55%), Positives = 474/657 (72%), Gaps = 4/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++++Y P+GDQP AI  +++G+    + Q L+GVTGSGKTFTMA +I  +QRPA+V+A
Sbjct: 3   FKLRSEYKPTGDQPQAIKAIVEGVRRGYRHQTLMGVTGSGKTFTMAHIINELQRPALVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LA QLY+EF+ FFP NAVEYF+SYYDYYQPEAYVP+TDTYIEK+SSIN++ID++RH
Sbjct: 63  PNKTLAGQLYAEFREFFPENAVEYFISYYDYYQPEAYVPQTDTYIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D I+V+SVSCIYG+GS E Y +M++ L+ G    + ELL  LV+  Y+R 
Sbjct: 123 SATAALLERRDVIIVASVSCIYGLGSPEDYGEMVISLRPGMETGRDELLKRLVENLYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I   RG FRV GD +E+ P    + A R+  FG++IE I EF PLTG+ +     + I+
Sbjct: 183 EIDFSRGKFRVRGDVVELMPVSAGENAIRIEFFGDEIERILEFNPLTGEILGRRTHVSIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+T R  +  A   I++EL+ R+  L+KEG+LLEAQRL  R  YDLEM+   G C+
Sbjct: 243 PASHYITTREKMLRAAAEIEKELEERVELLKKEGKLLEAQRLAHRTRYDLEMIREIGYCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+TGR PGEPP TL ++ P D ++F+DESH+ IPQ+ GMY GD  RK TL +Y
Sbjct: 303 GIENYSRYITGRQPGEPPYTLIDFFPRDFIVFIDESHIGIPQLRGMYEGDRSRKQTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL FEE+       I VSATPG +ELE     +VEQIIRPTGLVDP VE
Sbjct: 363 GFRLPSAMDNRPLTFEEFEAKVKQCIYVSATPGPYELENS-SQVVEQIIRPTGLVDPEVE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI L   +G R+L+T LTKRMAE+LT+YL +   RVRYMHSE+  LE
Sbjct: 422 VRPTQNQIDDLMKEIRLKVDKGYRVLVTTLTKRMAEELTDYLSDAGFRVRYMHSEIDALE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 482 RMDILRGLRLGEFDVLVGINLLREGLDLPEVALVAILDADKEGFLRSERSLVQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  KVI+YAD +T +++ AIDET RRR  QLE+N +H I P++V + I   I+  + E+
Sbjct: 542 NVEGKVIMYADHVTSAMKAAIDETNRRRAIQLEYNHQHGITPRTVTKSIRPPIEATIAEE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                 S       L+ ++ K  L  L  +M  AA+ L FE AA +RD I++ + + 
Sbjct: 602 PEEYRSS---TFEGLNARERKRLLTELELEMRRAAEMLEFERAAYLRDLIRQAEGTR 655


>gi|89256132|ref|YP_513494.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314605|ref|YP_763328.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502154|ref|YP_001428219.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167009835|ref|ZP_02274766.1| excinuclease ABC, B subunit [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254369136|ref|ZP_04985148.1| DNA excision repair enzyme [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953268|ref|ZP_06557889.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313510|ref|ZP_06804105.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89143963|emb|CAJ79184.1| DNA excision repair enzyme, subunit B (UvrABC system protein B)
           [Francisella tularensis subsp. holarctica LVS]
 gi|115129504|gb|ABI82691.1| excinuclease ABC subunit B [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156252757|gb|ABU61263.1| excinuclease ABC, B subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157122086|gb|EDO66226.1| DNA excision repair enzyme [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 668

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/667 (52%), Positives = 477/667 (71%), Gaps = 7/667 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + T Y P+GDQP AI  L+ GI++  + Q+LLGVTGSGKT+TMA VI+  Q+P +
Sbjct: 1   MNKFNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK +FP N VEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++
Sbjct: 61  ILAHNKTLAAQLYSEFKQYFPDNVVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY
Sbjct: 121 MRLSATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +K++++   
Sbjct: 181 SRNDMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKLKSLHRA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+ ++HYV  +      ++ IK+ELK R+   +KEG+LLEAQR+EQR  YD+EM++  G
Sbjct: 241 TIFPSTHYVASKERKEIVIEDIKKELKERVKYFKKEGKLLEAQRIEQRTKYDIEMIQELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RK+ L
Sbjct: 301 YCTGIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   V+Q+IRPTGL+DP
Sbjct: 361 VNYGFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R    QVED   EIN A  +  R+L+T LTK+M E+LTEYL E  + VRY+HS++ 
Sbjct: 420 EVFVRPVAIQVEDALSEINKAIAKEERVLITTLTKKMVENLTEYLSEHGVNVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQ IGR
Sbjct: 480 TVERVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQAIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--P 735
            ARN N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D  P
Sbjct: 540 VARNQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSP 599

Query: 736 ILLEDAATTNISIDAQQLSLSK----KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            + + A   N+ +    + +S      +    +K+L K+M   A  L FE+A  IRD+I 
Sbjct: 600 EMQKRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKIT 659

Query: 792 RLKSSPY 798
            +K    
Sbjct: 660 EIKQKFI 666


>gi|253575922|ref|ZP_04853256.1| excinuclease ABC, B subunit [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251844716|gb|EES72730.1| excinuclease ABC, B subunit [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 664

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/657 (53%), Positives = 472/657 (71%), Gaps = 3/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y   GDQP A+ QL++G+ + +K Q LLG TG+GKTFT+A  I  + RP +V+A
Sbjct: 11  FELISEYTLQGDQPEAVRQLVEGVLAGKKHQTLLGATGTGKTFTIANTIAKLGRPTLVIA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEF+ FFP N+V+YFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID++RH
Sbjct: 71  HNKTLAAQLASEFREFFPKNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSSINEEIDKLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+GS   Y  +++ L++G    + ++LS LV  QY+R 
Sbjct: 131 SATSALFERRDVIIVASVSCIYGLGSPMEYRNLVLSLRVGMEKPRNQILSRLVDIQYQRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +RGTFRV GD +EIFP+   + A RV  FG++IE I+E   LTG+ +   E + I+
Sbjct: 191 DINFVRGTFRVRGDVLEIFPASHGEKAIRVEFFGDEIERITEIDVLTGELVGEREHVAIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT   T+  A++ I+ EL+ RL E   +G+LLEAQRLEQR  YD+EM+   G C 
Sbjct: 251 PASHFVTQEETMKIALQNIERELEERLAEFRAQGKLLEAQRLEQRTRYDIEMMREVGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  LT R  G  P TL +Y P+D L+ +DESHVT+PQI  MY GD  RK  L E+
Sbjct: 311 GIENYSGPLTFRERGATPYTLLDYFPDDMLIVIDESHVTLPQIRAMYNGDQARKNVLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       I VSATPG +ELE C   +VEQIIRPTGL+DP +E
Sbjct: 371 GFRLPSALDNRPLRFEEFEEKATQLIYVSATPGPYELEHC-DTMVEQIIRPTGLLDPVIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI     +  R+L+T LTK+MAEDLT+YL E  I+VRY+HS++KTLE
Sbjct: 430 VRPTKGQIDDLIGEIRDRIAKDERVLVTTLTKKMAEDLTDYLKEVGIKVRYLHSDIKTLE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ I+RDLRLG F VL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RMSILRDLRLGTFHVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +V++YADTIT+S+  AI ET RRR+ Q+ +N+KH I PQ++++K+ +VI+   + +
Sbjct: 550 NADGRVLMYADTITESMDKAIKETERRRKIQIAYNEKHGITPQTIRKKVRDVIEATKVAE 609

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +    ++    +  +SK+  +A +  L  +M  AA NL FE AA +RD I  L++  
Sbjct: 610 SKADYLAD--AKGKMSKRDREAMIARLEAEMKEAAKNLQFERAAELRDAILELRAEA 664


>gi|325956386|ref|YP_004291798.1| excinuclease ABC subunit B [Lactobacillus acidophilus 30SC]
 gi|325332951|gb|ADZ06859.1| excinuclease ABC subunit B [Lactobacillus acidophilus 30SC]
 gi|327183205|gb|AEA31652.1| excinuclease ABC subunit B [Lactobacillus amylovorus GRL 1118]
          Length = 682

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/667 (51%), Positives = 466/667 (69%), Gaps = 5/667 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
              KD   F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  +
Sbjct: 3   KRQKD-RKFELVSKFKPAGDQKQAIDELTAGFKKGYKEQILEGATGTGKTFTMANIIAKL 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            +P +V+  NK L  QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+SSIN
Sbjct: 62  NKPTLVITHNKTLVGQLYGEFKGFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSIN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           ++ID++RH+ T +L+ERND IVV+SVSCIYG+G  + Y++ ++ +  G   E+  LL  L
Sbjct: 122 DEIDQLRHATTSALMERNDVIVVASVSCIYGLGDPKEYARSVLMIHEGQEYERNTLLRDL 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QY R DI   RG FRV GD +EIFP+   + A+R+  FG++I+ I E   LTG+ I 
Sbjct: 182 VNLQYDRNDIDFQRGRFRVRGDVVEIFPAGNSEHAYRIEFFGDEIDRIVEVDSLTGEVIG 241

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
             E+I ++  +H++T    +  A+K I +E+K+++ + E EG+LLEA+R++QR TYD+EM
Sbjct: 242 ERESISLFPATHFMTNDEQMRRALKAISKEMKVQVKKFEGEGKLLEAERIKQRTTYDMEM 301

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           +   G    IENYSR++ GR  GEPP TL ++ P D L+ +DESH T+P+I  MY GD +
Sbjct: 302 MGEVGYTNGIENYSRHMEGRKAGEPPYTLLDFFPNDFLILIDESHATMPEIRAMYNGDRN 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL +YGFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPT
Sbjct: 362 RKKTLIDYGFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERT-DHKVEQIIRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP +E+R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+
Sbjct: 421 GLLDPKIEVRPIEGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYL 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++KTLER++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+
Sbjct: 481 HSDIKTLERMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLV 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QT+GRAARN N +VI+YADTIT S++ AI  T RRR+ Q E NK+H I P+++ + I +V
Sbjct: 541 QTMGRAARNANGEVIMYADTITDSMKAAIKATKRRRKIQEEFNKEHGITPKTIIKPIQDV 600

Query: 733 I---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           I    P        ++   D     L+ K+ K  +K+L++QM  AA  L+FEEAA +RD 
Sbjct: 601 ISVTKPAGDAKEEKSDSFADLNFDELTAKQKKNMIKNLQEQMKEAAKKLDFEEAANLRDA 660

Query: 790 IKRLKSS 796
           I  L+SS
Sbjct: 661 IMELQSS 667


>gi|260664164|ref|ZP_05865017.1| excinuclease ABC, B subunit [Lactobacillus jensenii SJ-7A-US]
 gi|260562050|gb|EEX28019.1| excinuclease ABC, B subunit [Lactobacillus jensenii SJ-7A-US]
          Length = 681

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/658 (51%), Positives = 457/658 (69%), Gaps = 2/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQ  AI +L  G  +  K Q+L G TG+GKTFTMA +I  + +P +V++
Sbjct: 10  FDLVSKYKPAGDQGQAIDKLTAGFKAGAKEQILQGATGTGKTFTMANIIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT +L+ERND +VV+SVSCIYG+G    Y+  ++ L  G   ++  LL  LV  QY R 
Sbjct: 130 RATSALMERNDVVVVASVSCIYGLGDPREYAASVLSLHEGQEYDRNVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   + A+RV  FG++I+ I E   LTG+ I   + + ++
Sbjct: 190 DIDFQRGRFRVRGDIVEIFPAGNSNHAYRVEFFGDEIDRIVEVDSLTGEVIGERDQVSLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I +E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNEEQMKQALKRISQEMDLQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  + GR  GEPP TL ++ P+D L+ +DESH T+P+I  MY GD  RK TL +Y
Sbjct: 310 GIENYSAPIEGRKAGEPPHTLLDFFPDDFLILIDESHATMPEIRAMYNGDRKRKETLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL +  G IVEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQILYVSATPGDYELNRT-GKIVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIQGQIDDLVGEINKRIDRDERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+ DLR G FDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   LIQT+GRAAR
Sbjct: 489 RMQILHDLRKGDFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLIQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD IT S+++AIDET RRREKQ+  NK+H I P+++ + I +VI       
Sbjct: 549 NSDGTVIMYADKITDSMRIAIDETRRRREKQIAFNKEHGIVPKTIVKPIRDVISITKPVK 608

Query: 741 AATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                 S  +     L+KK+ +  +K+L +QM  AA  L+FE AA +RD I  L++S 
Sbjct: 609 EEKEKESFAELNFDELTKKQKQTMIKNLTEQMQEAAKKLDFEAAANLRDAIMELQNSV 666


>gi|116513719|ref|YP_812625.1| excinuclease ABC subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093034|gb|ABJ58187.1| Excinuclease ABC subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 680

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/665 (51%), Positives = 470/665 (70%), Gaps = 2/665 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +D   F++ + Y P+GDQ  AI QL  G  + +K Q+L G TG+GKT+TMA VI  M 
Sbjct: 3   KRQDNNKFELVSPYKPAGDQQQAIDQLTAGFQAGDKEQILKGATGTGKTYTMANVIAKMN 62

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P +V+  NK L  QLY+EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN+
Sbjct: 63  KPTLVITHNKTLVGQLYNEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASIND 122

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +ID++RH+AT +L+ RND IVV+SVSCIYG+G    Y   ++ +  G   E+  LL  LV
Sbjct: 123 EIDQLRHAATSALMSRNDVIVVASVSCIYGLGDPREYEASVLNVYTGQEYERNTLLRDLV 182

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R DI + RG FRV GD +E+FP+   D A+R+  FG++I+ I E  PLTG+    
Sbjct: 183 NIQYDRNDIDLQRGRFRVRGDVVEVFPAGYSDRAYRIEFFGDEIDRIVEVDPLTGEVHGV 242

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            ++I ++  +H++T    L  A+  IK E+  ++ + EKEG+LLEA+R++QR TYDLEML
Sbjct: 243 RDSISLFPATHFMTNDDQLAGAIDRIKAEMDDQVKKFEKEGKLLEAERIKQRTTYDLEML 302

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
              G    IENYSR +  R  GEPP TL ++ P+DSL+ +DESH T+P+I  MY GD +R
Sbjct: 303 REVGYTNGIENYSRQMENRKAGEPPYTLLDFFPKDSLILIDESHATMPEIRAMYNGDRNR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL +YGFRLPS +DNRPL+ EE+       + VSATPG +EL +    IVEQ+IRPTG
Sbjct: 363 KQTLIDYGFRLPSALDNRPLKLEEFEQHVNQIMYVSATPGDYELNRT-SRIVEQVIRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP +E+R    Q++D+  EINL  ++  R+ +T LTK+MAEDLT+YL +  I+VRY+H
Sbjct: 422 LLDPKIEVRPIEGQIDDLVAEINLRIERRERVFVTTLTKKMAEDLTDYLKDLGIKVRYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++KTLER++IIRDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   LIQ
Sbjct: 482 SDIKTLERMQIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLIQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N +VI+YAD IT S+++AIDET RRR  Q+++N++H I P+++ + + ++I
Sbjct: 542 TMGRAARNANGEVIMYADRITDSMKMAIDETNRRRAIQMKYNEEHGIVPKTIIKPVRDMI 601

Query: 734 DPILLEDAATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             +  +  A  + S  D     L+ K+ K  + +L++QM  AA  L+FE AA +RD I  
Sbjct: 602 SVVKADKEAEKSDSFADLNFDELTAKQKKQMIANLKEQMQDAAKRLDFESAANLRDAIIE 661

Query: 793 LKSSP 797
           L+ S 
Sbjct: 662 LEGSV 666


>gi|319943708|ref|ZP_08017989.1| excision endonuclease subunit UvrB [Lautropia mirabilis ATCC 51599]
 gi|319742941|gb|EFV95347.1| excision endonuclease subunit UvrB [Lautropia mirabilis ATCC 51599]
          Length = 729

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/690 (54%), Positives = 483/690 (70%), Gaps = 24/690 (3%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + +++   + P+GDQP AI  L++G+      Q LLGVTGSGKT+TMA VI  + RPA+V
Sbjct: 41  SPYRLHQPFPPAGDQPGAIDALVEGVEDGLSFQTLLGVTGSGKTYTMANVIARLGRPALV 100

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+E ++FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I+++
Sbjct: 101 LAPNKTLAAQLYAEMRDFFPENAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQL 160

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+SLLER D ++V SVSCIYGIG+   Y +M + L+ GD + Q++LL  LV  QYK
Sbjct: 161 RLSATKSLLERRDTVIVGSVSCIYGIGNPADYFEMRLVLRKGDRLAQRDLLKQLVAMQYK 220

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD+I++FPS   ++A RV MF +++E +  F PLTG+  + +    
Sbjct: 221 RNDTDFARGTFRVRGDTIDVFPSENAELALRVEMFDDEVEMLQLFDPLTGRIRQQIPRFV 280

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +YA SHYVTPR T+  A+  IK ELK RL     EG+L+EAQRLEQR  +DLEML+  G 
Sbjct: 281 VYAASHYVTPRATIVRALDTIKAELKDRLAFFHAEGKLVEAQRLEQRTLFDLEMLQELGF 340

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHVTI Q+ GMYRGD  RK TL 
Sbjct: 341 CKGIENYSRHLSGARPGEPPPTLIDYLPPDALMFIDESHVTIGQLGGMYRGDRARKDTLV 400

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL FEE+       I VSATP  +E     G +VEQ++RPTGLVDP 
Sbjct: 401 QYGFRLPSALDNRPLTFEEFESKVRQCIFVSATPSDYEATHA-GQVVEQVVRPTGLVDPE 459

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R A TQV+DV  EI     +G R+L+T LTKRMAEDLT++L +  +RVRY+HS++ T
Sbjct: 460 VEVRPATTQVDDVLSEITARVARGHRVLVTTLTKRMAEDLTDFLADHQVRVRYLHSDIDT 519

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILD DKEGFLRS+ SLIQTIGRA
Sbjct: 520 VERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDGDKEGFLRSERSLIQTIGRA 579

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  K ILYAD IT+S+Q AIDET RRR+KQL+ N +H I P+ V +++ E+ID +  
Sbjct: 580 ARNLEGKAILYADQITRSMQRAIDETARRRQKQLDFNAEHGIVPRGVVKQVRELIDGVYD 639

Query: 739 EDAATTNISIDAQQ-----------------------LSLSKKKGKAHLKSLRKQMHLAA 775
                +  +                             + ++ +    ++ L KQM   A
Sbjct: 640 LSGTESRPAAPGAAPGHGLGGVDDALLERTAEKLQGIDTRNEAQVSREIRRLEKQMATYA 699

Query: 776 DNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
            NL+FE+AA++RDE+  LK   +  G   S
Sbjct: 700 RNLDFEKAAQVRDELAALKQLLFGSGGQPS 729


>gi|89897604|ref|YP_521091.1| excinuclease ABC subunit B [Desulfitobacterium hafniense Y51]
 gi|89337052|dbj|BAE86647.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 686

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/657 (54%), Positives = 472/657 (71%), Gaps = 7/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  Y PSGDQP AI  L++ IHS  + Q LLGVTGSGKTFTMA +IE +QRP +++A
Sbjct: 7   FRLRAPYKPSGDQPQAIDALVESIHSGRRHQTLLGVTGSGKTFTMANIIEKVQRPTLILA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID+MRH
Sbjct: 67  HNKTLAAQLYTEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKMRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IVV+SVSCIYG+GS E Y  ++V L+ G  +++ ++L  L+  QY R 
Sbjct: 127 SATAALFERRDVIVVASVSCIYGLGSPEEYRDLMVSLRQGQEIDRNDILKKLISIQYDRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +E+ P+   + A R+ MFG++IE I E   LTG+ +     + I+
Sbjct: 187 DLAFERGTFRVRGDVVEVHPAGSSEHAVRIEMFGDEIEHIYEINVLTGEILGERRHVSIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHYVT R  +  A + I++EL+ +L   + E +LLEAQRLEQR  YDLEML   G C 
Sbjct: 247 PNSHYVTARDKVLVAAENIEKELEEQLRRFKDEDKLLEAQRLEQRTRYDLEMLREMGFCN 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+LT R  GE P TL  + PED L+ +DESHVT+PQ+ GMY GD  RK TL +Y
Sbjct: 307 GVENYSRHLTFREAGETPYTLLHFFPEDYLMMIDESHVTLPQVRGMYEGDRSRKTTLVDY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L P  + +SATPG +ELE C   IVEQIIRPTGL+DP + 
Sbjct: 367 GFRLPSALDNRPLKFAEFETLVPQRVYISATPGPYELEHCPQ-IVEQIIRPTGLLDPEIS 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +  R+L+T LTK+MAEDLT+YL   N+ V+Y+HS++ TLE
Sbjct: 426 VRPTKGQIDDLIGEINQRIARDERVLVTTLTKKMAEDLTDYLKNLNMSVKYLHSDITTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+R+LRLG  DV+VGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 486 RVEILRELRLGDIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD +T+S+++AI ET RRR  Q  +N+KH I PQ++++KI E+ +   + +
Sbjct: 546 NAQGKVIMYADQMTRSMEVAISETNRRRAIQEAYNEKHGITPQTIRKKIYEIPEATKVAE 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                 S       +  ++    LKSL ++M LAA +++FE AA IRD +  LK   
Sbjct: 606 KKAAYGS------KMPAEELAELLKSLEQEMRLAAKDMDFERAAEIRDAMIELKGEE 656


>gi|126701035|ref|YP_001089932.1| excinuclease ABC subunit B [Clostridium difficile 630]
 gi|254977034|ref|ZP_05273506.1| excinuclease ABC subunit B [Clostridium difficile QCD-66c26]
 gi|255094361|ref|ZP_05323839.1| excinuclease ABC subunit B [Clostridium difficile CIP 107932]
 gi|255102615|ref|ZP_05331592.1| excinuclease ABC subunit B [Clostridium difficile QCD-63q42]
 gi|255308441|ref|ZP_05352612.1| excinuclease ABC subunit B [Clostridium difficile ATCC 43255]
 gi|255316114|ref|ZP_05357697.1| excinuclease ABC subunit B [Clostridium difficile QCD-76w55]
 gi|255518775|ref|ZP_05386451.1| excinuclease ABC subunit B [Clostridium difficile QCD-97b34]
 gi|255651953|ref|ZP_05398855.1| excinuclease ABC subunit B [Clostridium difficile QCD-37x79]
 gi|306521702|ref|ZP_07408049.1| excinuclease ABC subunit B [Clostridium difficile QCD-32g58]
 gi|115252472|emb|CAJ70315.1| Excinuclease ABC subunit B [Clostridium difficile]
          Length = 656

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 477/657 (72%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++D+ P+GDQP AI  ++  I+  EK   LLGVTGSGKTFTMA +I+ +++P ++MA
Sbjct: 3   FKIKSDFKPTGDQPEAIKSIVDSINRNEKFSTLLGVTGSGKTFTMANIIQQVKKPTLIMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV  +DTYIEK++SIN++ID++RH
Sbjct: 63  HNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT S+LER D I++SSVSCIYG+G  + Y ++++ ++ G   ++ +++  L++ QY+R 
Sbjct: 123 SATASILERRDTIIISSVSCIYGLGDPKDYKELMLSIRPGMQRDRDDVIKRLIEIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++ A R+  FG++++ I+E   +TG+ +     + I+
Sbjct: 183 DINFTRGTFRVRGDILEIFPASNDEKAIRIEFFGDEVDRITEIDYVTGKIVGTRNHVVIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    +  A+  I+ EL+ ++   ++  RLLEAQR+EQR  YD+EML+  G CQ
Sbjct: 243 PASHYVTTPERIEKAIVEIENELQEQIKFFKENDRLLEAQRIEQRTKYDIEMLKEIGFCQ 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++TGR+ GE P TL ++ P+D L+ VDE+HVTIPQ+ GMY GD  RK +L E 
Sbjct: 303 GIENYSRHITGRSEGERPYTLMDFFPDDYLIIVDEAHVTIPQVRGMYAGDRSRKTSLIEN 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       + VSATPG +E++  +  I EQIIRPTGL+DP VE
Sbjct: 363 GFRLPSALDNRPLNFQEFEGNINQMLFVSATPGPYEIQHSE-TIAEQIIRPTGLLDPIVE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI    ++  R+L+T LTK+M+EDLT YL E  I+V+Y+HS++ TLE
Sbjct: 422 VRPINNQIDDLVGEITKTIEKNERVLITTLTKKMSEDLTNYLKEIGIKVKYLHSDIVTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLGKFDVLVGINLLREGLDIPE  L+AILDADKEGFLRS+T+LIQTIGRAAR
Sbjct: 482 RTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETALIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT S+Q AIDET RRR+ Q  +N++HNI P+++++ I + I+   + +
Sbjct: 542 NENGRVIMYADRITDSMQNAIDETKRRRDIQNLYNEEHNIIPKTIQKNIRDSIEATKVAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                   D       K + +A++  L+ +M  AA NL FE AA +RD++K+L+   
Sbjct: 602 EEVVYGISDTD----DKDEIRANIDKLKSEMMEAAQNLQFERAAELRDKVKQLEEKL 654


>gi|260684917|ref|YP_003216202.1| excinuclease ABC subunit B [Clostridium difficile CD196]
 gi|260688575|ref|YP_003219709.1| excinuclease ABC subunit B [Clostridium difficile R20291]
 gi|260211080|emb|CBA66456.1| excinuclease ABC subunit B [Clostridium difficile CD196]
 gi|260214592|emb|CBE07162.1| excinuclease ABC subunit B [Clostridium difficile R20291]
          Length = 664

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/665 (52%), Positives = 478/665 (71%), Gaps = 5/665 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
               D   F++++D+ P+GDQP AI  ++  I+  EK   LLGVTGSGKTFTMA +I+ +
Sbjct: 3   EKRSDTMDFKIKSDFKPTGDQPEAIKSIVDSINRNEKFSTLLGVTGSGKTFTMANIIQQV 62

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           ++P ++MA NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV  +DTYIEK++SIN
Sbjct: 63  KKPTLIMAHNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVAHSDTYIEKDASIN 122

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           ++ID++RHSAT S+LER D I++SSVSCIYG+G  + Y ++++ ++ G   ++ +++  L
Sbjct: 123 DEIDKLRHSATASILERRDTIIISSVSCIYGLGDPKDYKELMLSIRPGMQRDRDDVIKRL 182

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           ++ QY+R DI   RGTFRV GD +EIFP+  ++ A R+  FG++++ I+E   +TG+ + 
Sbjct: 183 IEIQYERNDINFTRGTFRVRGDILEIFPASNDEKAIRIEFFGDEVDRITEIDYVTGKIVG 242

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
               + I+  SHYVT    +  A+  I+ EL+ ++   ++  RLLEAQR+EQR  YD+EM
Sbjct: 243 TRNHVVIFPASHYVTTPERIEKAIVEIENELQEQIKFFKENDRLLEAQRIEQRTKYDIEM 302

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L+  G CQ IENYSR++TGR+ GE P TL ++ P+D L+ VDE+HVTIPQ+ GMY GD  
Sbjct: 303 LKEIGFCQGIENYSRHITGRSEGERPYTLMDFFPDDYLIIVDEAHVTIPQVRGMYAGDRS 362

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK +L E GFRLPS +DNRPL F+E+       + VSATPG +E++  +  I EQIIRPT
Sbjct: 363 RKTSLIENGFRLPSALDNRPLNFQEFEGNINQMLFVSATPGPYEIQHSE-TIAEQIIRPT 421

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP VE+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT YL E  I+V+Y+
Sbjct: 422 GLLDPIVEVRPINNQIDDLVGEITKTIEKNERVLITTLTKKMSEDLTNYLKEIGIKVKYL 481

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++ TLER EIIRDLRLGKFDVLVGINLLREGLDIPE  L+AILDADKEGFLRS+T+LI
Sbjct: 482 HSDIVTLERTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETALI 541

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN N +VI+YAD IT S+Q AIDET RRR+ Q  +N++HNI P+++++ I + 
Sbjct: 542 QTIGRAARNENGRVIMYADRITDSMQNAIDETKRRRDIQNLYNEEHNIIPKTIQKNIRDS 601

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           I+   + +        D       K + +A++  L+ +M  AA NL FE AA +RD++K+
Sbjct: 602 IEATKVAEEEVVYGISDTD----DKDEIRANIDKLKSEMMEAAQNLQFERAAELRDKVKQ 657

Query: 793 LKSSP 797
           L+   
Sbjct: 658 LEEKL 662


>gi|90962150|ref|YP_536066.1| excinuclease ABC subunit B [Lactobacillus salivarius UCC118]
 gi|90821344|gb|ABD99983.1| Excinuclease ABC subunit B [Lactobacillus salivarius UCC118]
          Length = 666

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/657 (53%), Positives = 475/657 (72%), Gaps = 1/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L +GI   EK Q+L+G TG+GKTFT++ VI+ + +P +V+A
Sbjct: 10  FELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKNVNKPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y +  + L++G  +E+ +LL+ L+  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPHEYREHTISLRVGQEIERNKLLNDLIDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E  PLTG+ I + E I I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDESALRVEFFGDEIDRIREIDPLTGETIADREHIAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L TA++ I++EL+ R  EL+ EG+LLEAQRL+QR TYD+EML+  G C 
Sbjct: 250 PATHFMTNEERLGTAIEGIQQELEERTTELKNEGKLLEAQRLQQRTTYDIEMLKEMGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P TL ++ P+D L+ VDESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRKPGEAPYTLLDFFPDDFLIVVDESHVTMPQVRGMYNGDRARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL  EE+       I +SATPG +E E+    +V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLTREEFEKHVNQIIYMSATPGPYEQEKT-SHVVQQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   +   R+ +T LTK+MAEDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 429 VRPIMGQMDDLVGEINKRVELNERVFVTTLTKKMAEDLTDYFKEMGIKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RDLR+GKFDVLVGINLL+EG+D+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTEIVRDLRMGKFDVLVGINLLKEGIDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD +T S++ AI ET RRR  Q ++NK HNI P+++ + I   I      +
Sbjct: 549 NASGHVIMYADDVTPSMEAAIKETKRRRSIQEQYNKDHNIIPKTIIKPIRAAISISSKVN 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            + TNIS       +SKK+    + +L +QM  AA  L+FEEAA +RD +  LK+  
Sbjct: 609 KSDTNISDTVDFADMSKKEQLEMISNLEEQMREAAKKLDFEEAATLRDTVMELKAQI 665


>gi|62261612|gb|AAX78002.1| unknown protein [synthetic construct]
          Length = 703

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/673 (52%), Positives = 481/673 (71%), Gaps = 7/673 (1%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
           + H  ++  F + T Y P+GDQP AI  L+ GI++  + Q+LLGVTGSGKT+TMA VI+ 
Sbjct: 21  DKHMLEMNKFNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQ 80

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            Q+P +++A NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAY+  +DTYIEK+SS+
Sbjct: 81  TQKPCLILAHNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYIAASDTYIEKDSSV 140

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           NE I++MR SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + 
Sbjct: 141 NEHIEQMRLSATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTK 200

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV+ QY R D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +K+
Sbjct: 201 LVEMQYSRNDMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKL 260

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
           +++    I+ ++HYV  +      ++ IK+ELK R+   EKEG+LLEAQR+EQR  YD+E
Sbjct: 261 KSLHRATIFPSTHYVASKERKEIVIEDIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIE 320

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M++  G C  IENYSR L+GR PG PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD 
Sbjct: 321 MIQELGYCTGIENYSRLLSGRAPGYPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDL 380

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK+ L  YGFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   V+Q+IRP
Sbjct: 381 SRKSNLVNYGFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVQQVIRP 439

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP V +R    QVED   EIN A  +  R+L+T LTK+M E+LTEYL E  + VRY
Sbjct: 440 TGLLDPEVFVRPVAIQVEDALSEINKAIAKEERVLITTLTKKMVENLTEYLSEHGVNVRY 499

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS++ T+ER++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SL
Sbjct: 500 LHSDIDTVERVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSL 559

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGR ARN N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +
Sbjct: 560 IQTIGRVARNQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDD 619

Query: 732 VID--PILLEDAATTNISIDAQQLSLSK----KKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           ++D  P + + A   N+ +    + +S      +    +K+L K+M   A  L FE+A  
Sbjct: 620 MLDSSPEMQKRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATT 679

Query: 786 IRDEIKRLKSSPY 798
           IRD+I  +K    
Sbjct: 680 IRDKITEVKQKFI 692


>gi|303231825|ref|ZP_07318539.1| excinuclease ABC, B subunit [Veillonella atypica ACS-049-V-Sch6]
 gi|302513503|gb|EFL55531.1| excinuclease ABC, B subunit [Veillonella atypica ACS-049-V-Sch6]
          Length = 726

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/688 (51%), Positives = 482/688 (70%), Gaps = 28/688 (4%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    F+++  + P+GDQP AI  L  GI   E  Q+LLG TG+GKTFTMAKVIEA+Q+P
Sbjct: 9   EGGQPFKVEAPFTPTGDQPTAIQSLTDGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKP 68

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +++A NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++I
Sbjct: 69  TLIIAHNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEI 128

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SL ER D I+V+SVSCIYG+G  E YS +++ L++G +  + E+LS LV  
Sbjct: 129 DKLRHSATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQTKSRDEILSKLVDI 188

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D+  IRGTFRV GD+IEIFP+   + A RV +FG++I+ + E   LTG+ I   +
Sbjct: 189 QYTRNDMNFIRGTFRVQGDTIEIFPAAYSERAIRVELFGDEIDRLVEVDALTGEVIAERK 248

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + +Y  SHYVT +  +  A++ I+ EL  +L +L+ E RLLEAQRLEQR  YD+EM++ 
Sbjct: 249 HVAVYPASHYVTTKEKMKIAVERIEAELDEQLAKLKAEDRLLEAQRLEQRTRYDIEMMQE 308

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR+++ R  GE P TL +Y P+D L+ VDESHVTIPQ+  MY GD  RK 
Sbjct: 309 MGYCSGIENYSRHMSERKAGEAPYTLIDYFPDDFLIMVDESHVTIPQVRAMYNGDRARKE 368

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           +L EYGFRLPS +DNRPL+F+E+       + VSATPG +E+E  +  + EQIIRPTGL+
Sbjct: 369 SLIEYGFRLPSALDNRPLKFDEFVERINQIVYVSATPGPYEME-VETNVAEQIIRPTGLL 427

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR  + Q++D+  EI+  A +  R+L+T LTK+MAEDLTE+L E  +RVRY+HS+
Sbjct: 428 DPSIEIRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSD 487

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + T+ER EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T++IQTI
Sbjct: 488 IVTIERAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTI 547

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNVN  VI+YAD +T S+Q A+DET RRR  Q  +N +H+I P+SV + + E+I+ 
Sbjct: 548 GRAARNVNGHVIMYADRVTGSMQRAMDETDRRRAVQEAYNIEHHITPKSVSKDVKELIEL 607

Query: 736 ILLEDAATTNI---------------------------SIDAQQLSLSKKKGKAHLKSLR 768
             +E+   T+                            +   +   ++ ++    ++ L 
Sbjct: 608 TKVEEDMVTDGKGLSPKKGKKKSSAAGMDHGHEPYAQDADATKVAEITAEELYNKIEELD 667

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +QM  AA  L FE+AA++RD++  L+  
Sbjct: 668 RQMKAAAKQLEFEKAAKLRDQLGELRQQ 695


>gi|290889850|ref|ZP_06552937.1| hypothetical protein AWRIB429_0327 [Oenococcus oeni AWRIB429]
 gi|290480460|gb|EFD89097.1| hypothetical protein AWRIB429_0327 [Oenococcus oeni AWRIB429]
          Length = 673

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/661 (52%), Positives = 469/661 (70%), Gaps = 5/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL++G++   K Q+LLG TG+GKTFT++ VI ++ +P ++++
Sbjct: 11  FKLHSNYQPTGDQPTAINQLIEGVNKGTKEQVLLGATGTGKTFTISNVIASVNKPTLILS 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++R+
Sbjct: 71  HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRN 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL RND IVV+SVS I+G+G    Y   ++ L+ GD   +  L+  L+  QY R 
Sbjct: 131 SATSSLLSRNDTIVVASVSSIFGLGDPHQYKDHVISLRTGDEYGRNNLMRHLIDIQYVRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++ A RV  FG++I+ I E  PLTG+ +   + I I+
Sbjct: 191 DIDFARGTFRVRGDVVEIFPASEDEKAIRVEFFGDEIDRIREINPLTGEILLEDDFISIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T    L +A   I++E++  + + E++G+LLEAQRL+QR  YD+EML   G   
Sbjct: 251 PAKHFMTNDNILKSATDGIRQEMEECVKKFEQQGKLLEAQRLKQRTEYDIEMLLEMGYTN 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D LL VDESHVT+PQ+ GMY GD  RK TL +Y
Sbjct: 311 GIENYSRWMDGRKQGEPPFTLLDFFPKDFLLVVDESHVTMPQVRGMYNGDQARKKTLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ-CQGIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+  E+       I +SATPG +EL +     I EQIIRPTGL+DP +
Sbjct: 371 GFRLPSALDNRPLKLSEFEQHVNQVIYMSATPGDYELSRVTPDNIAEQIIRPTGLLDPEI 430

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  R Q++D+  EIN  A +  R+ +T LTKRM+EDLT YL E  ++V+Y+HS++KTL
Sbjct: 431 EVRPIRGQIDDLLGEINARAAKNERVFITTLTKRMSEDLTTYLKESGVKVQYLHSDIKTL 490

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER E+IR+LRLGKFD LVGINLLREGLD+PE  LVAILDADK+GFLR++ SLIQTIGRAA
Sbjct: 491 ERTEVIRNLRLGKFDALVGINLLREGLDVPEVSLVAILDADKDGFLRNERSLIQTIGRAA 550

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736
           RN N  VI+YAD +T+++Q AIDET RRR  Q+++N++HNI P ++K++I   I     +
Sbjct: 551 RNSNGHVIMYADVVTENMQKAIDETARRRRIQIKYNEEHNITPTTIKKEIRGSIAISHEV 610

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              D +  +++  A    +  K  K  + +L KQM  AA  ++FEEAA++RD I  LK+ 
Sbjct: 611 QSADESKLDLTKVA-FADMPIKDQKEMVGNLTKQMKSAAKRMDFEEAAQLRDSILELKTE 669

Query: 797 P 797
            
Sbjct: 670 M 670


>gi|145589676|ref|YP_001156273.1| excinuclease ABC subunit B [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048082|gb|ABP34709.1| Excinuclease ABC subunit B [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 718

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/695 (53%), Positives = 483/695 (69%), Gaps = 9/695 (1%)

Query: 114 NPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLL 173
           +PL + G    P +  +  +     + + +   + P+GDQP AI  L++GI      Q L
Sbjct: 28  DPLGEAGHDLDPAKFVTFPD-----SPYHLYQPFPPAGDQPQAIDALVEGIEDGLTFQTL 82

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           LGVTGSGKTFTMA VI    RPAI+ APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQ
Sbjct: 83  LGVTGSGKTFTMANVIARTGRPAIIFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQ 142

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
           PEAYVP+ D +IEK+SSINE I++MR SAT+SLLER D I+V++VS IYGIG+   Y  M
Sbjct: 143 PEAYVPQRDLFIEKDSSINEHIEQMRLSATKSLLERRDVIIVATVSAIYGIGNPGDYHSM 202

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
           ++ L+ GD + Q+++L  L+  QY R +    RG FRV GD+I+IFP+   ++A RV +F
Sbjct: 203 VMTLRPGDKMSQRDILMRLIAMQYDRNETDFKRGVFRVRGDTIDIFPAEHNELAVRVELF 262

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
            + +E +  F PLTG+  + +    +Y +SHYVTPR T+  A++ IK EL+ RL E  K+
Sbjct: 263 DDVVESLQFFDPLTGKIRQKIPRFTVYPSSHYVTPRETVLKAIETIKVELRTRLDEFVKD 322

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
           G+L+EAQRLEQR  +DLEML   G C+ IENYSR+L+G  PGE PPTL +Y+P D+L+F+
Sbjct: 323 GKLVEAQRLEQRTRFDLEMLNELGFCKGIENYSRHLSGAAPGEAPPTLVDYLPNDALMFL 382

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
           DESHV I Q++ MY GD  RK TL E+GFRLPS MDNRPL+F E+      TI VSATP 
Sbjct: 383 DESHVLIGQLNAMYNGDKSRKHTLVEFGFRLPSAMDNRPLKFTEFETKMRQTIFVSATPA 442

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E    QG +VEQ+ RPTGLVDP +E+  A TQV+D+  +I+   +   R+L+TVLTKR
Sbjct: 443 DYEKAH-QGQVVEQVARPTGLVDPEIEVLPASTQVDDLLSQIHERVKVHERVLVTVLTKR 501

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAE LT+YL +  ++VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  L
Sbjct: 502 MAEQLTDYLSDNGVKVRYVHSDIDTVERVEILRDLRLGVFDVLVGINLLREGLDIPEVSL 561

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           VAILDADKEGFLRS+ SLIQTIGRAARNV  K ILYAD IT S++ A+ ET RRR KQ+ 
Sbjct: 562 VAILDADKEGFLRSERSLIQTIGRAARNVRGKAILYADRITDSMKRAMGETERRRTKQIA 621

Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID---AQQLSLSKKKGKAHLKSLRKQ 770
            NK H I P+ VK++I ++ID +         +  +   A+   + +K   A +K L KQ
Sbjct: 622 FNKLHGIEPKGVKKRIKDIIDGVYDVKEKRHEMQTEQERARYEDMGEKDLAAEIKRLEKQ 681

Query: 771 MHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           M+  A NL FE+AA  RD + ++K   +     DS
Sbjct: 682 MNSEAKNLEFEKAASTRDRLTKVKEMAFGARSRDS 716


>gi|315037913|ref|YP_004031481.1| excinuclease ABC subunit B [Lactobacillus amylovorus GRL 1112]
 gi|312276046|gb|ADQ58686.1| excinuclease ABC subunit B [Lactobacillus amylovorus GRL 1112]
          Length = 682

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/667 (51%), Positives = 466/667 (69%), Gaps = 5/667 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
              KD   F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  +
Sbjct: 3   KRQKD-RKFELVSKFKPAGDQEQAIDELTAGFKKGYKEQILEGATGTGKTFTMANIIAKL 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            +P +V+  NK L  QLY EFK FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+SSIN
Sbjct: 62  NKPTLVITHNKTLVGQLYGEFKGFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSIN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           ++ID++RH+ T +L+ERND IVV+SVSCIYG+G  + Y++ ++ +  G   E+  LL  L
Sbjct: 122 DEIDQLRHATTSALMERNDVIVVASVSCIYGLGDPKEYARSVLMIHEGQEYERNTLLRDL 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QY R DI   RG FRV GD +EIFP+   + A+R+  FG++I+ I E   LTG+ I 
Sbjct: 182 VNLQYDRNDIDFQRGRFRVRGDVVEIFPAGNSEHAYRIEFFGDEIDRIVEVDSLTGEVIG 241

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
             E+I ++  +H++T    +  A+K I +E+K+++ + E EG+LLEA+R++QR TYD+EM
Sbjct: 242 ERESISLFPATHFMTNDEQMRRALKAISKEMKVQVKKFEGEGKLLEAERIKQRTTYDMEM 301

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           +   G    IENYSR++ GR  GEPP TL ++ P D L+ +DESH T+P+I  MY GD +
Sbjct: 302 MGEVGYTNGIENYSRHMEGRKAGEPPYTLLDFFPNDFLILIDESHATMPEIRAMYNGDRN 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL +YGFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPT
Sbjct: 362 RKKTLIDYGFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERT-DHKVEQIIRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP +E+R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+
Sbjct: 421 GLLDPKIEVRPIEGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYL 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++KTLER++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+
Sbjct: 481 HSDIKTLERMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLV 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QT+GRAARN N +VI+YADTIT S++ AI  T RRR+ Q E NK+H I P+++ + I +V
Sbjct: 541 QTMGRAARNANGEVIMYADTITDSMKAAIKATKRRRKIQEEFNKEHGITPKTIIKPIQDV 600

Query: 733 I---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           I    P        ++   D     L+ K+ K  +K+L++QM  AA  L+FEEAA +RD 
Sbjct: 601 ISVTKPAGDAKEEKSDSFADLNFDELTAKQKKNMIKNLQEQMKEAAKKLDFEEAANLRDA 660

Query: 790 IKRLKSS 796
           I  L+SS
Sbjct: 661 IMELQSS 667


>gi|227833193|ref|YP_002834900.1| excinuclease ABC, subunit B [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184179|ref|ZP_06043600.1| excinuclease ABC subunit B [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454209|gb|ACP32962.1| excinuclease ABC, subunit B [Corynebacterium aurimucosum ATCC
           700975]
          Length = 697

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/696 (51%), Positives = 483/696 (69%), Gaps = 9/696 (1%)

Query: 116 LLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
                 I        +    +    F++++++ P+GDQPAAIA+L + +   E+  +L+G
Sbjct: 3   FAAEHPILPVSEHRPVGEIERRSAEFRVESEFQPAGDQPAAIAELDERLSRGERDVVLMG 62

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GK+ T A +IE  QRP +VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPE
Sbjct: 63  ATGTGKSATAAWLIEKQQRPTLVMAPNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPE 122

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AY+ +TDTYIEK+SSINE ++R+RHSAT +LL R D +VVSSVSCIYG+G+ +SY    V
Sbjct: 123 AYIAQTDTYIEKDSSINEDVERLRHSATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSV 182

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L+ G+ +++   L  LV  QY+R D+G  RGTFRV GD+++I P++ E+ A R+  FG+
Sbjct: 183 VLEEGEEIDRDRFLRLLVDIQYERNDVGFTRGTFRVKGDTVDIIPAY-EERAVRIEFFGD 241

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           D++E+   +PLTG  +  V+ ++I+  +HYV     +  A++ IKEEL  RL ELE  G+
Sbjct: 242 DVDELYYIHPLTGDVLERVDEVRIFPATHYVAGPERMARAIEDIKEELAERLAELENRGK 301

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRL  R  YDLEM+E  G C  IENYSR++ GR  G  P TL +Y PED L  +DE
Sbjct: 302 LLEAQRLRMRTEYDLEMIEQVGFCSGIENYSRHVDGRPAGSAPATLLDYFPEDFLTIIDE 361

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVT+PQI GM+ GD  RK  L E+GFRLPS +DNRPL F+E+      T+ +SATPG +
Sbjct: 362 SHVTVPQIGGMFEGDMARKRNLVEFGFRLPSAVDNRPLTFDEFEERVGQTVYMSATPGDF 421

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           E+    G  VEQ+IRPTGLVDP V ++  + Q++D+ DE+     +  R+L+T LTKRMA
Sbjct: 422 EMTASGGEFVEQVIRPTGLVDPKVTVKPTKGQIDDLIDEVRARTAKQERVLVTTLTKRMA 481

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL E  I+VRY+HS++ TL+R+E++R LRLG+FDVLVGINLLREGLD+PE  LVA
Sbjct: 482 EDLTDYLLEHGIKVRYLHSDIDTLQRVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVA 541

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS TSLIQTIGRAARNV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +N
Sbjct: 542 ILDADKEGFLRSTTSLIQTIGRAARNVSGEVIMYADKITDSMQEAIEETERRREKQIAYN 601

Query: 716 KKHNINPQSVKEKIMEVIDPILL------EDAATTNISIDAQQLSLSKKKGKAHLKSLRK 769
           K+H I+PQ +++KI +++D +        +DA  T I       S++  + +A +  L  
Sbjct: 602 KEHGIDPQPLRKKIADILDQVYENADEQGQDADPTAIVDKPDVSSMAADEVQALIDDLTT 661

Query: 770 QMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           QM  AA  L FE A R+RDEI  LK     +GL ++
Sbjct: 662 QMREAARELKFELAGRLRDEIADLKKEQ--RGLKEA 695


>gi|170078851|ref|YP_001735489.1| excinuclease ABC subunit B [Synechococcus sp. PCC 7002]
 gi|169886520|gb|ACB00234.1| excinuclease ABC, B subunit [Synechococcus sp. PCC 7002]
          Length = 673

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/669 (51%), Positives = 466/669 (69%), Gaps = 4/669 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
            +     F++   + P+GDQP AIA+L++ + S+ K Q LLG TG+GKTFTMA VI  MQ
Sbjct: 2   SNGSNVLFRLHAPFEPTGDQPQAIAKLVQSLASQAKYQTLLGATGTGKTFTMAAVIAQMQ 61

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P +V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P TDTYIEK +SIN+
Sbjct: 62  KPTLVLAHNKTLAAQLCNELRQFFPYNAVEYFISYYDYYQPEAYIPVTDTYIEKTASIND 121

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +ID +RHSATRSL ER D IVV+S+SCIYG+G    Y +  + LK+G+ ++Q+ +L  LV
Sbjct: 122 EIDMLRHSATRSLFERKDVIVVASISCIYGLGIPSEYLKAAISLKVGEELDQRAVLRQLV 181

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R D  + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ +++
Sbjct: 182 TVQYNRNDTDLSRGNFRVKGDILEIVPAY-EDRVIRVEFFGDEIDAIRLLDPVTGEILQS 240

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           ++ + IY   H+VTP+  L  A + IK EL  +L  LE E +LLEAQRL+QR +YDLE+L
Sbjct: 241 LDQVNIYPARHFVTPQEQLAIACEQIKAELDSQLTVLEAENKLLEAQRLKQRTSYDLELL 300

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           +  G C  +ENYSR+L GR  G PP  L +Y PED LL VDESHVT+PQI GMY GD  R
Sbjct: 301 QEVGYCNGVENYSRFLAGREAGSPPECLIDYFPEDWLLVVDESHVTVPQIRGMYNGDQAR 360

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K  L ++GFRLPS  DNRPL+ EE+       + VSATPG+WE+EQ +  ++EQ+IRPTG
Sbjct: 361 KKVLIDHGFRLPSAADNRPLKSEEFWQKVNQCVFVSATPGNWEIEQSEARVIEQVIRPTG 420

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           +VDP +++R    QV+D+  EI    +   R+L+T LTKRMAEDLT+Y  ++ + V+Y+H
Sbjct: 421 VVDPEIDVRPTDGQVDDLLGEIRQREKLKERVLITTLTKRMAEDLTDYFSDQGVAVQYLH 480

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+K++ERIEI++ LR G+FDVL+G+NLLREGLD+PE  LVAI+DADKEGFLR++ SLIQ
Sbjct: 481 SEIKSIERIEILQALRKGEFDVLIGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQ 540

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAAR+V  + ILYAD +T S+  AI ET RRR  Q+ +NKKHNI PQ +K++    I
Sbjct: 541 TIGRAARHVRGQAILYADNLTDSMAKAIAETERRRVIQIAYNKKHNITPQPIKKRDENAI 600

Query: 734 DPILLEDAATTNISIDAQQLSLSK---KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
              L          +      + +   +K    +K L +QM  AA NL FE+AA +RD+I
Sbjct: 601 LSFLDISRRLNTQQLQQVVEHMEEVPLEKIPDVIKQLEEQMKEAAKNLEFEQAALLRDQI 660

Query: 791 KRLKSSPYF 799
           K+L+     
Sbjct: 661 KKLRHQLLG 669


>gi|298674374|ref|YP_003726124.1| excinuclease ABC subunit B [Methanohalobium evestigatum Z-7303]
 gi|298287362|gb|ADI73328.1| excinuclease ABC, B subunit [Methanohalobium evestigatum Z-7303]
          Length = 664

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/666 (54%), Positives = 470/666 (70%), Gaps = 6/666 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ T Y P GDQP+AI+ L  G++   K Q LLGVTGSGKTFTMA VIE +Q+P +
Sbjct: 1   MKPFKVVTSYEPRGDQPSAISNLTNGLNKGFKHQTLLGVTGSGKTFTMANVIENVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAY+P TDTYIEKESSINE+I+R
Sbjct: 61  VIAHNKTLAAQLYSEFREFFPDNAVEYFVSYYDYYQPEAYIPTTDTYIEKESSINEEINR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT+SL+ER D IVVSSVSCIY IGS + + +M + L  G+ V++  L +SLV  QY
Sbjct: 121 LRLSATKSLMERRDVIVVSSVSCIYNIGSPDEWKEMSLFLSPGEEVDKSSLSASLVNMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   +GTFR  GD+IEI+P+  E+   R+ +FG++IE+IS F PLTG+    +   
Sbjct: 181 ERNDIEFTQGTFRSRGDTIEIYPA-QEEHGIRIELFGDEIEKISYFDPLTGKVQNTLNED 239

Query: 378 ---KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               IY   H+V P+  ++ AM  I++EL+  +   E   + LEAQRL QR  +D+EML 
Sbjct: 240 EYIAIYPAKHFVMPQEQIDRAMDSIEKELEEHVSRFEANNQQLEAQRLLQRTNFDMEMLR 299

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSR+  GR PG+PP +L ++ P+D L+F+DESHVTIPQI GMY GD  RK
Sbjct: 300 EIGYCSGIENYSRHFDGRRPGDPPYSLLDFFPDDYLIFIDESHVTIPQIGGMYNGDKSRK 359

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +L EYGFRLPS  DNRPL+F+E+       I VSATP ++E  + +  +VEQIIRPTGL
Sbjct: 360 DSLVEYGFRLPSAYDNRPLKFDEFENRVNQIIYVSATPANYEFNKSEQ-VVEQIIRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           VDP + +R    Q++D+  E+   A++G R L+T LTKRMAEDLT+YL E  IRV+YMHS
Sbjct: 419 VDPEIIVRPIENQIDDLIGEVREVAEEGYRTLVTTLTKRMAEDLTDYLLEVGIRVKYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ TLER EI+R LR G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 479 DIDTLERAEIVRSLRKGDFDVLVGINLLREGLDIPEVELVAILDADKEGFLRSERSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-MEVI 733
           IGRA+RN N +VILYAD  T S++ AIDET RRRE Q++ N+++ I PQ++ + I  E++
Sbjct: 539 IGRASRNANGRVILYADKTTGSMKRAIDETNRRRELQIDFNQRNGIVPQTITKAIQKELV 598

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +    E   +      A   + S K  +  +  L + MHLAA NL FE+AA +RD+I  L
Sbjct: 599 EVEYPEPQTSEYSETVALAENKSTKDIENLIIDLEEDMHLAAKNLEFEKAAELRDKINDL 658

Query: 794 KSSPYF 799
           +     
Sbjct: 659 RRKYSL 664


>gi|254374576|ref|ZP_04990057.1| DNA excision repair enzyme [Francisella novicida GA99-3548]
 gi|151572295|gb|EDN37949.1| DNA excision repair enzyme [Francisella novicida GA99-3548]
          Length = 668

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/667 (53%), Positives = 479/667 (71%), Gaps = 7/667 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + T Y P+GDQP AI  L+ GI +  + Q+LLGVTGSGKT+TMA VI+  Q+P +
Sbjct: 1   MNKFNLVTKYAPAGDQPQAIQSLVDGIDTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++
Sbjct: 61  ILAHNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY
Sbjct: 121 MRLSATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +KI+++   
Sbjct: 181 SRNDMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKIKSLHRA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+ ++HYV  +      ++ IK+ELK R+   EKEG+LLEAQR+EQR  YD+EM++  G
Sbjct: 241 TIFPSTHYVASKERKEIVIEEIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RK+ L
Sbjct: 301 YCTGIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   V+Q+IRPTGL+DP
Sbjct: 361 VNYGFRLPSALDNRPLKFNEFEKLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R    QVED   EIN A  +  R+L+T LTK+MAE+LTEYL E  + VRY+HS++ 
Sbjct: 420 EVFVRPVAIQVEDALSEINKAIAKEERVLITTLTKKMAENLTEYLSEHGVNVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--P 735
            ARN N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D  P
Sbjct: 540 VARNQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSP 599

Query: 736 ILLEDAATTNISIDAQQLSLSK----KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            + + A   N+ +    + +S      +    +K+L K+M   A  L FE+A  IRD+I 
Sbjct: 600 EMQKRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKIT 659

Query: 792 RLKSSPY 798
            +K    
Sbjct: 660 EIKQKFI 666


>gi|254497351|ref|ZP_05110154.1| excinuclease ABC subunit B [Legionella drancourtii LLAP12]
 gi|254353404|gb|EET12136.1| excinuclease ABC subunit B [Legionella drancourtii LLAP12]
          Length = 672

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/650 (55%), Positives = 477/650 (73%), Gaps = 1/650 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +++ P+GDQP AIA L+ G+ S    Q LLGVTGSGKTFT+A VI+AM+RP ++M
Sbjct: 4   LFKIYSNFQPAGDQPTAIASLIDGLKSGLAKQTLLGVTGSGKTFTIAHVIQAMRRPTLIM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR
Sbjct: 64  APNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT++L+ER D I+V++VS IYG+G  +SY +M++ L  G+   Q+++L  L + QY R
Sbjct: 124 LSATKALIERKDAIIVATVSAIYGLGDPDSYLRMVLHLSRGEHTGQRKILQRLAEMQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++ + RG FRV GD I+IFP+  E  A R+ +F +++E I++F PLTG+  + +  + I
Sbjct: 184 TNMSLERGQFRVHGDVIDIFPADSEREAIRIELFDDEVENIAQFDPLTGEVAQRLPRVTI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  +HYVTPR  +   + ++KEEL  RL E   + +L+EAQRLEQR  +D+EM+   G C
Sbjct: 244 FPKTHYVTPRERILETIDWVKEELHERLAEFNAQNKLVEAQRLEQRTYFDIEMMLELGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+ R+ G+ PPTLF+Y+P ++LL +DESHVTIPQI  MY+GD  RK TL +
Sbjct: 304 SGIENYSRYLSARSAGQAPPTLFDYLPPEALLVIDESHVTIPQIGAMYKGDRSRKETLVQ 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+    P TI +SATPG +E E     + EQ++RPTGLVDP V
Sbjct: 364 YGFRLPSALDNRPLRFEEFEERSPQTIYISATPGPYEKEHADN-VAEQVVRPTGLVDPEV 422

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR  RTQV+D+  E     QQG R+L+T LTKRMAEDLT+YL E  I+VRY+HS+V T+
Sbjct: 423 EIRPVRTQVDDLMSEARQVIQQGGRVLVTTLTKRMAEDLTDYLNEHGIKVRYLHSDVDTV 482

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAA
Sbjct: 483 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVVLVAILDADKEGFLRSDRSLIQTIGRAA 542

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN + ILYAD +T S+Q A+DET+RRR+KQ   N+ H I P+ + + + ++++   + 
Sbjct: 543 RNVNGRAILYADKVTGSMQRALDETSRRRDKQRAFNETHGITPKGINKSVADIMEAAYIG 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                      +    S ++   H+ +L KQM++ A N+ FE AA++RD+
Sbjct: 603 KRKDVVAEPIPEYAHWSTQELVKHINTLEKQMYMHAKNMEFEAAAKVRDQ 652


>gi|227824384|ref|ZP_03989216.1| excinuclease ABC subunit B [Acidaminococcus sp. D21]
 gi|226904883|gb|EEH90801.1| excinuclease ABC subunit B [Acidaminococcus sp. D21]
          Length = 698

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/661 (54%), Positives = 471/661 (71%), Gaps = 2/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ++  + PSGDQP AI  L+KG+      Q+LLG TG+GKTFT+A++I+ +QRP +V+A
Sbjct: 35  FQLEAPFAPSGDQPEAIEALVKGVKEGMDTQVLLGATGTGKTFTIAQMIQKVQRPTLVIA 94

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFPHNAVEYFVSYYDYYQPEAY+P TDTYIEK+SSIN++ID++RH
Sbjct: 95  HNKTLAAQLASEFKAFFPHNAVEYFVSYYDYYQPEAYIPATDTYIEKDSSINDEIDKLRH 154

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IVVSSVSCIYG+G+ + Y   ++ L++G  V++  +L  LVK +Y+R 
Sbjct: 155 SATSALFERRDVIVVSSVSCIYGLGAPKDYYDSVLSLRVGQEVDRDAILEKLVKIRYERN 214

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG+FR  GD IE+ PS   +   R+ +FG++++ I E   LTG  I     + I+
Sbjct: 215 DLVLQRGSFRARGDVIEVIPSSYNEKGIRIELFGDEVDSIMEIDVLTGDVIDKRTHVAIF 274

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    L  A   I++ELK RL  L +EG+LLEA+RLEQR  YDLEM+E  G C 
Sbjct: 275 PASHYVTSDENLERARGDIRKELKARLTVLHEEGKLLEAERLEQRTNYDLEMMEEMGYCS 334

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR  GEPP TL  Y P+D L  +DESHVT+PQ+  MY GD  RK  L  Y
Sbjct: 335 GIENYSRHLTGRKAGEPPFTLVNYFPDDFLTVIDESHVTLPQLRAMYAGDRSRKEQLVNY 394

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+   R   I VSATP ++EL+  +  +VEQIIRPTGL+DP +E
Sbjct: 395 GFRLPSALDNRPLTFDEFQKERGQIIYVSATPAAYELDHAEQ-VVEQIIRPTGLLDPKIE 453

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI+  A+ G RIL+T LTK+MAEDLTEYL    IRVRY+HS++ T++
Sbjct: 454 VRPIKGQIDDLLGEIHKVAEAGERILVTTLTKKMAEDLTEYLAASGIRVRYLHSDIATID 513

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T++IQTIGRAAR
Sbjct: 514 RAEIIRDLRAGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAAR 573

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-PILLE 739
           N + +VI+YAD +T S+Q AI+ET RRR KQ  +NK H I P+++++K++E+I    + E
Sbjct: 574 NAHGRVIMYADVMTGSMQRAIEETERRRAKQEAYNKAHGIVPKTIEKKVVELIKLTKVEE 633

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
           D  T           LS+K  +  +K + K M  AA  L+FE AA  RD++  +K     
Sbjct: 634 DGGTVKAGGVDSLKKLSEKALQKQVKLIEKNMKAAAKQLDFELAAEYRDQMILIKGEISK 693

Query: 800 Q 800
           +
Sbjct: 694 R 694


>gi|297171124|gb|ADI22135.1| helicase subunit of the DNA excision repair complex [uncultured
           myxobacterium HF0200_19H16]
          Length = 668

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/655 (57%), Positives = 488/655 (74%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + + P GDQP AI +L+ G       Q LLGVTGSGKTFT+A VI+ +Q P +++A
Sbjct: 8   FQLTSLFEPQGDQPQAILELVNGYRQGNTNQTLLGVTGSGKTFTVANVIQKLQVPTLLIA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAYVP TDTYI+K+S+IN+ IDRMRH
Sbjct: 68  HNKTLAAQLYEEFKQLFPLNAVEYFVSYYDYYQPEAYVPSTDTYIDKDSTINDAIDRMRH 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLERND I+VSSVSCIYG+GS E+Y  M+V L++G  V++  +L  LV+ QY R 
Sbjct: 128 SATRTLLERNDVIIVSSVSCIYGLGSAEAYYDMLVFLQVGTIVDRDHILKKLVEIQYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP H +  A R+  FG++I+ I    PL G+++  ++ + IY
Sbjct: 188 DIDFHRGTFRVRGDVLEIFPVHQDSQALRIEWFGDEIDSIKNIDPLRGKELAGLDKVAIY 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV    +   A+  I+EEL+ RL  L    +L++AQRLEQR  +DLEM+E  G C 
Sbjct: 248 PATHYVVTPESKVRALDSIREELQKRLQTLRDTNQLVQAQRLEQRTLFDLEMIEEMGYCT 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PG PPPTL +Y P++ LL +DESH T+PQI  MYRGD  RK TL +Y
Sbjct: 308 GIENYSRHLTGRPPGHPPPTLMDYFPQNYLLVIDESHQTVPQIGAMYRGDRSRKTTLVDY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E++ LR  ++ +SATPG +ELEQCQG+IVEQ+IRPTGLVDPP+E
Sbjct: 368 GFRLPSALDNRPLRFDEFDKLREKSLYISATPGEYELEQCQGVIVEQVIRPTGLVDPPIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A +QV+D+ +EI +   +  R+L+T LTKRMAEDLTE+  + +I VRY+HS++ TL+
Sbjct: 428 VRPAISQVDDLLEEIRITIAKQQRVLVTTLTKRMAEDLTEFFADASIEVRYLHSDIDTLD 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIE++R LR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 488 RIELLRGLRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTVGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +VI+YAD ITKS+Q AI+ET RRREKQL+HNK+H I P+++++ I E+    L E 
Sbjct: 548 NVDGRVIMYADKITKSMQNAIEETDRRREKQLDHNKEHGIIPRTIQKPIPELNATALYER 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T    D  + +++       +  +R +MH AA+ L FE AA++RD+IK L+ 
Sbjct: 608 DIDTMDQEDLAKKTINPALIPEKVTKMRAKMHEAAEALEFELAAQLRDQIKALEE 662


>gi|294793535|ref|ZP_06758672.1| excinuclease ABC subunit B [Veillonella sp. 3_1_44]
 gi|294455105|gb|EFG23477.1| excinuclease ABC subunit B [Veillonella sp. 3_1_44]
          Length = 725

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/688 (51%), Positives = 481/688 (69%), Gaps = 28/688 (4%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    F+++  + P+GDQP AI  L +GI   E  Q+LLG TG+GKTFTMAKVIEA+Q+P
Sbjct: 9   EGGQPFKVEAPFTPTGDQPTAIQSLTEGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKP 68

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +++A NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++I
Sbjct: 69  TLIIAHNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEI 128

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SL ER D I+V+SVSCIYG+G  E YS +++ L++G +  + E+LS LV  
Sbjct: 129 DKLRHSATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQTKSRDEILSKLVDI 188

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D+  IRGTFRV GD+I+IFP+   + A RV +FG++I+ + E   LTG+ I   +
Sbjct: 189 QYTRNDMNFIRGTFRVQGDTIDIFPAAYSERAIRVELFGDEIDRLVEVDSLTGEVIAERK 248

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + +Y  SHYVT +  +N A++ I+ EL  +L +L+   RLLEAQRLEQR  YD+EM++ 
Sbjct: 249 HVAVYPASHYVTTKEKMNIAVERIEAELDEQLAKLKAADRLLEAQRLEQRTRYDIEMMQE 308

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR+++ R  GE P TL +Y P+D L+ VDESHVT+PQI  MY GD  RK 
Sbjct: 309 MGYCSGIENYSRHMSERKAGEAPFTLIDYFPDDFLIMVDESHVTMPQIRAMYNGDRARKE 368

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           +L EYGFRLPS +DNRPL+F+E+       + VSATPG +E+E  +  I EQIIRPTGL+
Sbjct: 369 SLIEYGFRLPSALDNRPLQFDEFVERINQIVYVSATPGPYEME-VETNIAEQIIRPTGLL 427

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR  + Q++D+  EI+  A +  R+L+T LTK+MAEDLTE+L E  +RVRY+HS+
Sbjct: 428 DPSIEIRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSD 487

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + T+ER EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T++IQTI
Sbjct: 488 IVTIERAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTI 547

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNVN  VI+YAD +T S+Q AIDET RRR  Q  +N +HNI P+SV + + E+I+ 
Sbjct: 548 GRAARNVNGHVIMYADRVTGSMQRAIDETDRRRAVQEAYNIEHNITPKSVSKDVKELIEL 607

Query: 736 ILLED---------------------------AATTNISIDAQQLSLSKKKGKAHLKSLR 768
             +E+                            +    +   +   ++ ++    ++ L 
Sbjct: 608 TKIEEDMVTEGKGLSPKKGKQKKSSEGMDHGHESYVQDTSAPKVADITPEELYNKIEELD 667

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +QM  AA  L FE AA++RD++  L+  
Sbjct: 668 RQMKAAAKQLEFESAAKLRDQLGVLRQQ 695


>gi|38233744|ref|NP_939511.1| excinuclease ABC subunit B [Corynebacterium diphtheriae NCTC 13129]
 gi|81829915|sp|Q6NHI3|UVRB_CORDI RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|38200005|emb|CAE49674.1| excinuclease ABC subunit B [Corynebacterium diphtheriae]
          Length = 681

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/680 (52%), Positives = 478/680 (70%), Gaps = 9/680 (1%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + +  +    F++ ++Y P+GDQPAAI +L   +   E+  +LLG TG+GK+ T A +IE
Sbjct: 1   MGDIERTDARFEVISEYEPAGDQPAAIEELDARLSRGERDVVLLGATGTGKSATAAWLIE 60

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
             QRP +VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SS
Sbjct: 61  QQQRPTLVMAPNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSS 120

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN+ ++R+RH AT SLL R D +VVSSVSCIYG+G+ +SY    V L++ + VE+   L 
Sbjct: 121 INDDVERLRHRATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLRVDEEVERDRFLR 180

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV  QY R D+G  RGTFRV GD+++I P++ E+VA RV  FG+DI+ +   +PLTG  
Sbjct: 181 LLVDIQYDRNDVGFTRGTFRVKGDTVDIIPAY-EEVAVRVEFFGDDIDALYYIHPLTGDV 239

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           IR V+ ++I+  +HYV     +  A++ IK EL+ RL +LE  G+LLEAQRL  R  YDL
Sbjct: 240 IRQVDEVRIFPATHYVAGPERMAKAVEDIKAELRDRLEDLENRGKLLEAQRLRMRTEYDL 299

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+E  G C  IENYSR+L GR  G  P TL +Y PED L  +DESHVT+PQI GM+ GD
Sbjct: 300 EMIEQVGFCSGIENYSRHLDGRPAGSAPATLLDYFPEDFLTIIDESHVTVPQIGGMFEGD 359

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK  L E+GFRLPS +DNRPL++EE+      T+ +SATPG +EL    G  VEQ+IR
Sbjct: 360 MSRKRNLVEFGFRLPSALDNRPLKWEEFEQRVGQTVYMSATPGDYELAASGGEYVEQVIR 419

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP +++R  R Q++D+  EI     +  R+L+T LTK+MAEDLT+YL E  IRVR
Sbjct: 420 PTGLVDPEIDVRPTRGQIDDLIHEIKQRTTKDERVLVTTLTKKMAEDLTDYLLENGIRVR 479

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS++ TL+R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  S
Sbjct: 480 YLHSDIDTLQRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTKS 539

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+  VI+YAD IT S+Q AIDET RRREKQ+ +NK+H I+PQ +++KI 
Sbjct: 540 LIQTIGRAARNVSGTVIMYADKITDSMQYAIDETERRREKQIAYNKEHGIDPQPLRKKIA 599

Query: 731 EVIDPILLEDAATTNISIDA------QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           ++++ +    A +T  S DA         S+   + ++ +  L  QM  AA  L FE A 
Sbjct: 600 DILEQVQESKAESTAPSSDAVVVSKTNTSSMPVAELRSLIDDLTTQMGTAARELKFELAG 659

Query: 785 RIRDEIKRLKSSPYFQGLDD 804
           R+RDEI  LK     +G+++
Sbjct: 660 RLRDEIAELKKE--LRGMEE 677


>gi|296140129|ref|YP_003647372.1| excinuclease ABC subunit B [Tsukamurella paurometabola DSM 20162]
 gi|296028263|gb|ADG79033.1| excinuclease ABC, B subunit [Tsukamurella paurometabola DSM 20162]
          Length = 720

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/707 (50%), Positives = 476/707 (67%), Gaps = 31/707 (4%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
               I    +  + FQ+ ++Y P+GDQP AI QL   +++ E+  +LLG TG+GK+ T A
Sbjct: 14  EHRPIGEIERASSEFQVVSEYEPAGDQPQAIEQLAGRLNAGERDVVLLGATGTGKSATTA 73

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            +IE +QRP +VMAPNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIE
Sbjct: 74  WLIEKVQRPTLVMAPNKTLAAQLANELRAMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIE 133

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+SSIN+ ++R+RHSAT SLL R D +VV+SVSCIYG+G+ +SY    VQL++G  V++ 
Sbjct: 134 KDSSINDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVQLEVGMEVDRD 193

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
            LL  LV  QY R D+   RG+FRV GD++EI PS+ E++A R+  FG+++E +   +PL
Sbjct: 194 ALLRLLVDVQYTRNDMAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEVEALYYLHPL 252

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG  +R VE ++I+  +HYV     +  A++ I+ EL+ RL E E++G+LLEAQRL  R 
Sbjct: 253 TGDVVRQVENLRIFPATHYVAGPERMARAIEGIESELEERLAEFERQGKLLEAQRLRMRT 312

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
            YD+EM+   G C  IENYSR++ GR  G  P TL +Y PED LL +DESHVT+PQI  M
Sbjct: 313 QYDVEMMRQVGFCSGIENYSRHIDGRAAGSAPATLLDYFPEDFLLVIDESHVTVPQIGAM 372

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           + GD  RK  L ++GFRLPS +DNRPL +EE+      T+ +SATPG +EL Q  G  VE
Sbjct: 373 FEGDTSRKRNLVDFGFRLPSAVDNRPLTWEEFTERVGQTVYLSATPGQYELGQSGGEFVE 432

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q+IRPTGLVDP V I+  + Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  
Sbjct: 433 QVIRPTGLVDPQVVIKPTKGQIDDLMHEIRERTEKDERVLVTTLTKKMAEDLTDYLLEAG 492

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           IRVRY+HS++ TL R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLR
Sbjct: 493 IRVRYLHSDIDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLR 552

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S TSLIQTIGRAARNV+ +V +YAD IT S++ AIDET RRREKQ+ +N +  ++PQ ++
Sbjct: 553 STTSLIQTIGRAARNVSGEVHMYADKITDSMRNAIDETDRRREKQIAYNTEMGVDPQPLR 612

Query: 727 EKIMEVIDPILLEDAATTN----------------------------ISIDAQQLSLSKK 758
           +KI +++D +  E   T                              +       S+ + 
Sbjct: 613 KKIADILDQVYTEADDTEAAIGGPGRNATRGRRAQGELRSASSVSAGMYEGEDVKSMPRA 672

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           +    +  L  QM  AA  L FE A RIRDEI  LK     +G+D +
Sbjct: 673 ELADLISELTDQMMNAARELQFELAGRIRDEIADLKKE--LRGMDAA 717


>gi|255282077|ref|ZP_05346632.1| excinuclease ABC subunit B [Bryantella formatexigens DSM 14469]
 gi|255267396|gb|EET60601.1| excinuclease ABC subunit B [Bryantella formatexigens DSM 14469]
          Length = 660

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/658 (52%), Positives = 467/658 (70%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI +L+KG     + + LLGVTGSGKTFTMA VI+ + +P +
Sbjct: 1   MERFELVSEYKPTGDQPQAIEKLVKGFKEGNQCETLLGVTGSGKTFTMANVIQQLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYI K+S++N++ID+
Sbjct: 61  IIAHNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIAKDSAVNDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SL+ER D +++SSVSCIYG+G  E++ +M+V L+ G   ++ E++  L+  QY
Sbjct: 121 LRLSATASLVERRDVVIISSVSCIYGLGEPENFEKMMVSLRPGMEKDRDEVIRQLIDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RGTFRV GD +EIFP+   D A+RV  FG++I+ I++   LTG+    +E I
Sbjct: 181 DRSEMDFHRGTFRVHGDVLEIFPASAGDYAFRVEFFGDEIDRITQIDVLTGEIKSRMEHI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++  SHYV P   +  A   I+EEL  R+   + E +LLEAQR+ +R  +D+EM++ TG
Sbjct: 241 AVFPASHYVVPPDRIRQAAADIEEELAERVAYFKSEDKLLEAQRIAERTNFDIEMMKETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L G  PG PP TL +Y P+D L+ +DESH TIPQI  MY GD  RK TL
Sbjct: 301 FCSGIENYSRHLAGLKPGAPPHTLIDYFPDDFLMIIDESHKTIPQIRAMYSGDQSRKTTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL FEE+       + VSATPG +E E  + +  EQIIRPTGL+DP
Sbjct: 361 VDYGFRLPSAKDNRPLNFEEFESKIDQIMFVSATPGEYE-EAHEQLRAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V++R    Q++D+  E+N    +  ++L+T LTKRMAEDLTEY+ E  IRVRY+HS++ 
Sbjct: 420 KVDVRPVEGQIDDLVGEVNKEVAKKNKVLITTLTKRMAEDLTEYMREIGIRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS TSLIQTIGR
Sbjct: 480 TLERTEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSATSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD +T S+++AI+ET RRR  Q  +N++H I PQ++++ + ++I    
Sbjct: 540 AARNAEGHVIMYADVMTDSMKIAIEETERRRRVQDAYNQEHGITPQTIQKSVRDLISISK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                   +++D +  S+SKK+ +  +  ++K+M  AA  LNFE AA +RD++  LK 
Sbjct: 600 EVAKEEKKLAVDPE--SMSKKELEKLIAEVQKKMKKAAAELNFEAAAELRDQMINLKQ 655


>gi|145295505|ref|YP_001138326.1| excinuclease ABC subunit B [Corynebacterium glutamicum R]
 gi|140845425|dbj|BAF54424.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 720

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/698 (50%), Positives = 477/698 (68%), Gaps = 11/698 (1%)

Query: 116 LLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
                 + +      +    +    F + +++ P+GDQPAAI +L + +   E+  +L+G
Sbjct: 24  FAAEHPVLSHSEHRPVGEIERSDDKFVVVSEFEPAGDQPAAIKELDERLDRGERDVVLMG 83

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GK+ T A +IE  QRP +VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPE
Sbjct: 84  ATGTGKSATAAWLIEKQQRPTLVMAPNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPE 143

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AY+ +TDTYIEK+SSINE ++R+RHSAT SLL R D +VVSSVSCIYG+G+ +SY    V
Sbjct: 144 AYIAQTDTYIEKDSSINEDVERLRHSATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSV 203

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L +G+ +++   L  LV  QY+R D+G  RG FRV GD+++I P++ E++A R+  FG+
Sbjct: 204 VLNVGEEIDRDRFLRLLVDIQYERNDVGFTRGAFRVKGDTVDIIPAY-EELAVRIEFFGD 262

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ +   +PLTG  IR V  I+I+  +HYV     +  A+  IK EL++RL +LE  G+
Sbjct: 263 EIDALYYIHPLTGDTIRQVNEIRIFPATHYVAGPERMEKAVTDIKAELEVRLADLENRGK 322

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRL  R  YDLEM+E  G C  IENYSR++ GR  G  P TL +Y PED L  +DE
Sbjct: 323 LLEAQRLRMRTEYDLEMIEQVGFCSGIENYSRHIDGRGEGTAPATLIDYFPEDFLTIIDE 382

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVT+PQI GM+ GD  RK  L E+GFRLPS MDNRPL +EE++  R  T+ +SATPG +
Sbjct: 383 SHVTVPQIGGMFEGDMSRKRNLVEFGFRLPSAMDNRPLTWEEFDERRGQTVFMSATPGKF 442

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           E+    G  VEQ+IRPTGLVDP V ++  + Q++D+  EI     +  R+L+T LTK+MA
Sbjct: 443 EIAAADGEFVEQVIRPTGLVDPKVTVKPTKGQIDDLIHEIRQRTDKDERVLVTTLTKKMA 502

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL E  IRVRY+HS++ TL+R+E++R LRLG++DVLVGINLLREGLD+PE  LVA
Sbjct: 503 EDLTDYLLENGIRVRYLHSDIDTLQRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVA 562

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS TSLIQTIGRAARNV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +N
Sbjct: 563 ILDADKEGFLRSTTSLIQTIGRAARNVSGEVIMYADKITDSMQYAIEETDRRREKQVAYN 622

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAA--------TTNISIDAQQLSLSKKKGKAHLKSL 767
           K+H I+PQ +++KI +++D +    A            +       S+  K+ +  +  L
Sbjct: 623 KEHGIDPQPLRKKIADILDQVYDNSADGAGPSASGDAAVVAKPDVSSMPAKEVQKLIDDL 682

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             QM  AA  L FE A R+RDEI  LK     +G+ D+
Sbjct: 683 SAQMAAAARELKFELAGRLRDEIFELKKE--LRGIKDA 718


>gi|328881646|emb|CCA54885.1| Excinuclease ABC subunit B [Streptomyces venezuelae ATCC 10712]
          Length = 731

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/701 (50%), Positives = 480/701 (68%), Gaps = 34/701 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++   + +  F++ ++Y PSGDQPAAIA L + I + EK  +LLG TG+GK+ T A +
Sbjct: 24  RPVSKIERSVAPFEVVSEYKPSGDQPAAIADLERRIRAGEKDVVLLGATGTGKSATTAWM 83

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 84  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 143

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V LK+G+ V++ +L
Sbjct: 144 SSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGEEVDRDQL 203

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG
Sbjct: 204 LRRFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTG 262

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I     + ++  SHYV     +  A+  I+ EL+ RL EL+K+G+ LE+QRL  R TY
Sbjct: 263 EVISEDRELYVFPASHYVAGPERMERAVNDIERELEGRLAELDKQGKHLESQRLRMRTTY 322

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   GSC  IENYS +  GR PG  P TL +Y PED LL +DESHVT+PQI  MY 
Sbjct: 323 DIEMMRQIGSCSGIENYSMHFDGREPGSAPNTLLDYFPEDFLLVIDESHVTVPQIGAMYE 382

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG++EL +  G  VEQI
Sbjct: 383 GDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYLSATPGTYELSRGDG-FVEQI 441

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI L  ++  R+L+T LTK+MAEDLT+Y  E  I+
Sbjct: 442 IRPTGLVDPEVVVKPTEGQIDDLVHEIRLRTERDERVLVTTLTKKMAEDLTDYFLELGIQ 501

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADK+GFLRS 
Sbjct: 502 VRYLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSG 561

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +N +H I+PQ +++K
Sbjct: 562 TSLIQTIGRAARNVSGQVHMYADRITPAMEQAIDETNRRREKQIAYNTEHGIDPQPLRKK 621

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKK------------------------------ 758
           I +++  I  E+  T  +     +     K                              
Sbjct: 622 INDIVATIAREEIDTEELLGTGYRQGKEGKGTKAPVPSLAAHGVKGKGKAGSTVELGDRP 681

Query: 759 --KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             +  A ++ +  +M  AA  L FE AAR+RDE+  LK   
Sbjct: 682 ATELAAIIEEMTDRMRAAAAELQFEVAARLRDEVGELKKEL 722


>gi|303229510|ref|ZP_07316298.1| excinuclease ABC, B subunit [Veillonella atypica ACS-134-V-Col7a]
 gi|302515635|gb|EFL57589.1| excinuclease ABC, B subunit [Veillonella atypica ACS-134-V-Col7a]
          Length = 726

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/688 (51%), Positives = 482/688 (70%), Gaps = 28/688 (4%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    F+++  + P+GDQP AI  L  GI   E  Q+LLG TG+GKTFTMAKVIEA+Q+P
Sbjct: 9   EGGQPFKVEAPFTPTGDQPTAIQSLTDGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKP 68

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +++A NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++I
Sbjct: 69  TLIIAHNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEI 128

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SL ER D I+V+SVSCIYG+G  E YS +++ L++G +  + E+LS LV  
Sbjct: 129 DKLRHSATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQTKSRDEILSKLVDI 188

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D+  IRGTFRV GD+IEIFP+   + A RV +FG++I+ + E   LTG+ I   +
Sbjct: 189 QYTRNDMNFIRGTFRVQGDTIEIFPAAYSERAIRVELFGDEIDRLVEVDALTGEVIAERK 248

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + +Y  SHYVT +  +  A++ I+ EL  +L +L+ E RLLEAQRLEQR  YD+EM++ 
Sbjct: 249 HVAVYPASHYVTTKEKMKIAVERIEAELDEQLAKLKAEDRLLEAQRLEQRTRYDIEMMQE 308

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR+++ R  GE P TL +Y P+D L+ VDESHVTIPQ+  MY GD  RK 
Sbjct: 309 MGYCSGIENYSRHMSERKAGEAPYTLIDYFPDDFLIMVDESHVTIPQVRAMYNGDRARKE 368

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           +L EYGFRLPS +DNRPL+F+E+       + VSATPG +E+E  +  + EQIIRPTG++
Sbjct: 369 SLIEYGFRLPSALDNRPLKFDEFVERINQIVYVSATPGPYEME-VETNVAEQIIRPTGIL 427

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR  + Q++D+  EI+  A +  R+L+T LTK+MAEDLTE+L E  +RVRY+HS+
Sbjct: 428 DPSIEIRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSD 487

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + T+ER EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T++IQTI
Sbjct: 488 IVTIERAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTI 547

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNVN  VI+YAD +T S+Q A+DET RRR  Q  +N +H+I P+SV + + E+I+ 
Sbjct: 548 GRAARNVNGHVIMYADRVTGSMQRAMDETDRRRAVQEAYNIEHHITPKSVSKDVKELIEL 607

Query: 736 ILLEDAATTNI---------------------------SIDAQQLSLSKKKGKAHLKSLR 768
             +E+   T+                            +   +   ++ ++    ++ L 
Sbjct: 608 TKIEEDMVTDGKGLSPKKGKKKSSAAGMDHGHEPYAQDADATKVAEITAEELYNKIEELD 667

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +QM  AA  L FE+AA++RD++  L+  
Sbjct: 668 RQMKAAAKQLEFEKAAKLRDQLGELRQQ 695


>gi|322383005|ref|ZP_08056835.1| excinuclease ABC subunit B-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153028|gb|EFX45488.1| excinuclease ABC subunit B-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 664

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/659 (53%), Positives = 465/659 (70%), Gaps = 2/659 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K    F++ ++Y P GDQP AIA+L++G+   +  Q LLG TG+GKTFT A+VI  + RP
Sbjct: 5   KSDKKFELVSEYSPQGDQPKAIAELVEGVKQGKAHQTLLGATGTGKTFTAAQVIAQLNRP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LAAQL SEFK FFP+NAV YFVSYYDYYQPEAY+P +DTYIEK+SSIN++I
Sbjct: 65  TLVIAHNKTLAAQLASEFKEFFPNNAVSYFVSYYDYYQPEAYIPSSDTYIEKDSSINDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SL ER D IVV+SVSCIYG+GS + Y  +++ L++G    + ++L  LV  
Sbjct: 125 DKLRHSATSSLFERRDIIVVASVSCIYGLGSPKEYGSLLLSLRVGMEKSRNDILRRLVDI 184

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY+R D+  +RGTFRV GD IEIFP+   + A RV +FG++IE I+E   LTG+ +   E
Sbjct: 185 QYQRNDMNFVRGTFRVRGDVIEIFPASRSEQAVRVELFGDEIERITEIDVLTGEILGERE 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I I+  SH+VT       A+K I+ EL+ RL EL  +G+LLEAQRLEQR  YD+EM+  
Sbjct: 245 HIAIFPASHFVTHEDKTKLAVKNIERELEGRLEELRGQGKLLEAQRLEQRTRYDMEMMLE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYS  LT R  G  P TL +Y P+D L+ +DESHVT+PQI  MY GD  RK 
Sbjct: 305 MGFCSGIENYSGPLTFRERGSTPYTLLDYFPDDMLVMIDESHVTLPQIRAMYNGDQARKT 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L E+GFRLPS +DNRPL+ EE+       I +SATPG +ELE C   +VEQIIRPTGL+
Sbjct: 365 VLVEHGFRLPSALDNRPLKLEEFEQKVKQAIYISATPGPYELEHCPE-MVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +E+R  + Q++D+  E+     +  R+L+T LTK+MAEDLT+YL E  I+VRY+HS+
Sbjct: 424 DPIIEVRPTKGQIDDLLAEVQDRIAKDERVLVTTLTKKMAEDLTDYLKEVGIKVRYLHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER++I+RDLRLG F VLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTI
Sbjct: 484 IKTLERMQILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN   +VI+Y D IT S+  AI ET RRR  Q  +NK+H I P +V +KI +VI+ 
Sbjct: 544 GRAARNSEGRVIMYGDKITDSMDKAIRETERRRAIQEAYNKEHGITPTTVAKKIRDVIEA 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             + +  T  ++ + +   +SK+     ++ L  +M  AA NL FE AA +RD +  LK
Sbjct: 604 TKVAEQKTEYLA-EVKTAKMSKRDRMKLIERLEAEMKEAAKNLQFERAAELRDAVLELK 661


>gi|332670360|ref|YP_004453368.1| excinuclease ABC subunit B [Cellulomonas fimi ATCC 484]
 gi|332339398|gb|AEE45981.1| excinuclease ABC, B subunit [Cellulomonas fimi ATCC 484]
          Length = 701

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/694 (51%), Positives = 481/694 (69%), Gaps = 27/694 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             +    + +  FQ+ +++ PSGDQPAAIA+L   I++ EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVTELQRTVAPFQVVSEFTPSGDQPAAIAELASRINAGEKDVVLLGATGTGKSATTAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+
Sbjct: 62  IEQVQRPTLVMAPNKTLAAQLATEFRELLPNNAVEYFVSYYDYYQPEAYIVQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN++++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V L +G  +++ +L
Sbjct: 122 SSINDEVERLRHSATSSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVTLDVGQQIDRDQL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V+ QY R D+   RGTFRV GD++EI P + E++A R+  FG++IE I+  +PLTG
Sbjct: 182 LRRFVQMQYTRNDLAFTRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIEAIATLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             +R+ + + I+  +HYV     +  A+  I+ EL+ RL ELE + +LLEAQRL  R TY
Sbjct: 241 DVVRSEDQMMIFPATHYVAGPERMERAIAGIELELEDRLAELESQNKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   GSC  IENYSR++ GR  G  P TL ++ PED LL +DESHVT+PQI  M+ 
Sbjct: 301 DIEMMRQIGSCSGIENYSRHIDGRTAGSAPNTLLDFFPEDFLLVIDESHVTVPQIGAMFE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L E+GFRLPS  DNRPLR+EE+      T+ +SATPG +EL    G +VEQI
Sbjct: 361 GDMSRKRALVEHGFRLPSATDNRPLRWEEFVERIGQTVYLSATPGDYELSMADG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++  + Q++D+  EI+   ++  R+L+T LTK+MAEDLT+Y  E+ +R
Sbjct: 420 IRPTGLVDPEVVVKPTKGQIDDLLGEIHDRVERDERVLVTTLTKKMAEDLTDYFLEKGVR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSEV TL R+E++R+LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSEVDTLRRVELLRELRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +V +YAD IT ++QLAI+ET+RRREKQ+ +N +  I+PQ +++K
Sbjct: 540 KSLIQTIGRAARNVSGQVHMYADKITPAMQLAIEETSRRREKQIAYNTERGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKK-------------------------KGKAH 763
           I ++ D +  EDA T  +   A + +   K                         +    
Sbjct: 600 IGDITDLLAREDADTAELLGGAGRQASRGKAPVPGFGSKGAPRDERTRLTGAAAGELAGL 659

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L  QMH AA  L FE AAR+RDEI  LK   
Sbjct: 660 IQELTDQMHAAAGELQFELAARLRDEISGLKKEL 693


>gi|134101920|ref|YP_001107581.1| excinuclease ABC subunit B [Saccharopolyspora erythraea NRRL 2338]
 gi|133914543|emb|CAM04656.1| excinuclease ABC, subunit B [Saccharopolyspora erythraea NRRL 2338]
          Length = 700

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/700 (50%), Positives = 486/700 (69%), Gaps = 28/700 (4%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           +++  +    F+M +DY P+GDQP AI  L + I+S E   +LLG TG+GK+ T A +IE
Sbjct: 1   MSDIPRTGGRFRMVSDYQPAGDQPQAIDDLERRINSGETDVVLLGATGTGKSATTAWLIE 60

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +V+ PNK LAAQ  +E + FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SS
Sbjct: 61  RVQRPTLVLEPNKTLAAQFANELRGFFPDNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSS 120

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE ++R+RHSAT +LL R DC+VVSSVSCIYG+G+ +SY    +QL++G   ++  LL 
Sbjct: 121 INEDVERLRHSATSNLLSRRDCVVVSSVSCIYGLGTPQSYLDRSIQLQVGGETDRDVLLR 180

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
           +LV  QY R DI   RGTFRV GD++E+ P++ E++A R+ MFG++I+ +   +PLTG+ 
Sbjct: 181 ALVDVQYTRNDIAFARGTFRVRGDTVEVIPAY-EELAVRIEMFGDEIDRLYYLHPLTGEV 239

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +R V+ ++I+  +HYV     +  A++ I+ EL  +L +LEK+ +LLEAQRL  R  YD+
Sbjct: 240 VREVDELRIFPATHYVAGPERMEKAIRSIEAELDEQLAKLEKQNKLLEAQRLRMRTQYDI 299

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   G C  IENYSR++  R  G  P TL +Y P+D LL +DESHVT+PQ+ GMY GD
Sbjct: 300 EMMRQVGFCSGIENYSRHVDDRPAGSAPATLLDYFPDDFLLIIDESHVTVPQVGGMYEGD 359

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL E+GFRLPS +DNRPL +EE+      T+ +SATPG +E+ Q  G  VEQ+IR
Sbjct: 360 ASRKRTLVEHGFRLPSALDNRPLTWEEFADRIGQTVYLSATPGPYEMGQAGGEFVEQVIR 419

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++    Q++D+  EI   A++  R+L+T LTK+MAEDLT+Y  E  IRVR
Sbjct: 420 PTGLVDPEVVVKPTEGQIDDLVHEIRERAERDERVLVTTLTKKMAEDLTDYFLELGIRVR 479

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSEV TL R+E++R LRLG++DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS TS
Sbjct: 480 YLHSEVDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSGTS 539

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD IT S++ AIDET RRREKQ+ +N++  I+PQ +++KI 
Sbjct: 540 LIQTIGRAARNVSGQVHMYADRITDSMRHAIDETNRRREKQIAYNEEKGIDPQPLRKKIA 599

Query: 731 EVIDPILLEDAATTNISI-------------------------DAQQLSLSKKKGKAHLK 765
           +++D +  E   T  +++                         D    S+ + +    ++
Sbjct: 600 DILDRVYSESEDTEEVAVGGSGRNVSRGKKPSGEAVGSAGLLEDRDIKSMPRAELADLVQ 659

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
            L  QM  AA +L FE AAR+RDEI+ LK     +G+D +
Sbjct: 660 QLNDQMMSAARDLQFELAARLRDEIQDLKKE--LRGMDAA 697


>gi|317485270|ref|ZP_07944150.1| excinuclease ABC [Bilophila wadsworthia 3_1_6]
 gi|316923396|gb|EFV44602.1| excinuclease ABC [Bilophila wadsworthia 3_1_6]
          Length = 678

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/673 (51%), Positives = 465/673 (69%), Gaps = 10/673 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F+++T+Y P+GDQPAAI QL   I +  + Q+LLGVTGSGKTFT+A VI  + RPA
Sbjct: 5   ETPLFKLRTEYVPTGDQPAAIEQLASNIEAGVRDQVLLGVTGSGKTFTVANVIAQVNRPA 64

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+APNK LAAQLY+EF+  FP NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN+ ID
Sbjct: 65  LVLAPNKTLAAQLYNEFRALFPENAVEYFVSYYDYYQPEAYVPASDTYIEKDSAINDDID 124

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++RH+AT +LL R D I+V+SVSCIYG+GS E Y+++I+ +++G  V    +++ LV  Q
Sbjct: 125 KLRHAATHALLTRRDVIIVASVSCIYGLGSPEYYARLIIPVEVGQRVSMDAIITKLVDVQ 184

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R D+   RGTFRV GD +E+ P++  + A R+  FG++IE + E  PLTG+ + N+  
Sbjct: 185 YQRNDMDFHRGTFRVRGDVLEVIPAYEHERALRLEFFGDEIEAVREIDPLTGEILGNIGK 244

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             IY  SHYV+ R  L  AM  +++EL  RL   + + +L+EAQRLEQR   DLEM++  
Sbjct: 245 TVIYPASHYVSDRDNLERAMSDVRDELGERLRLFQSQNKLVEAQRLEQRTQLDLEMMQEL 304

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSR+L GR  G+PP TL +Y P+D +LF DESH++IPQ+ GM++GD  RK T
Sbjct: 305 GYCTGIENYSRHLDGRKEGDPPATLLDYFPDDFVLFADESHISIPQVGGMFKGDRSRKTT 364

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L ++GFRLPS +DNRPL F E+       + VSATPG WELE+ QGI+ EQIIRPTGL+D
Sbjct: 365 LVDFGFRLPSALDNRPLEFHEFLERLNQVVYVSATPGKWELERSQGIVAEQIIRPTGLLD 424

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P VE+R  + Q++D+  E     ++  R+L+T LTKRMAEDLTEYL    +  RY+HS++
Sbjct: 425 PEVEVRPVKGQIDDLLGECRARVEKHERVLVTTLTKRMAEDLTEYLNSMGVAARYLHSDI 484

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+ II+ LR G+FDVLVGINLLREGLDIPE  LV ILDADKEGFLRS  SLIQT G
Sbjct: 485 DTMERMAIIKALRAGEFDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSTGSLIQTFG 544

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN   KV+LYADT+T S++ A+ ET RRR KQ + N+ H I P ++ + +    D +
Sbjct: 545 RAARNAGGKVLLYADTVTASMRAAMGETARRRAKQQDWNETHGITPTTISKPLATPFDSL 604

Query: 737 LLEDAATTNISIDAQQLS----------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
                         +Q            ++ +    +LK   ++M  AA +L FE+AA +
Sbjct: 605 YTSSGEGKGKRGRGKQAKQPAEASASVDITAQNVARYLKQFEREMRDAARDLEFEKAAAL 664

Query: 787 RDEIKRLKSSPYF 799
           RD IK+L+     
Sbjct: 665 RDRIKQLREQFLI 677


>gi|238019503|ref|ZP_04599929.1| hypothetical protein VEIDISOL_01372 [Veillonella dispar ATCC 17748]
 gi|237864202|gb|EEP65492.1| hypothetical protein VEIDISOL_01372 [Veillonella dispar ATCC 17748]
          Length = 724

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/688 (52%), Positives = 482/688 (70%), Gaps = 28/688 (4%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    F+++  + P+GDQP AI  L  GI   E  Q+LLG TG+GKTFTMAKVIEA+Q+P
Sbjct: 9   EGGQPFKVEAPFTPTGDQPTAIQSLTDGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKP 68

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +++A NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++I
Sbjct: 69  TLIIAHNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEI 128

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SL ER D I+V+SVSCIYG+G  E YS++++ L++G +  + E+LS LV  
Sbjct: 129 DKLRHSATMSLFERRDVIIVASVSCIYGLGDPEDYSELVLSLRLGQTKSRDEILSKLVDI 188

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D+  IRGTFRV GD+IEIFP+   + A RV +FG++I+ + E   LTG+ I   +
Sbjct: 189 QYTRNDMNFIRGTFRVQGDTIEIFPAAYSERAIRVELFGDEIDRLVEVDALTGEVIVERK 248

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + +Y  SHYVT +  +  A++ I+ EL  +L +L+   RLLEAQRLEQR  YD+EM++ 
Sbjct: 249 HVAVYPASHYVTTKEKMKVAVERIEAELDEQLAKLKAADRLLEAQRLEQRTRYDIEMMQE 308

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR+++ R  GE P TL +Y P+D L+ VDESHVTIPQ+  MY GD  RK 
Sbjct: 309 MGYCSGIENYSRHMSERKAGEAPHTLIDYFPDDFLIMVDESHVTIPQVRAMYNGDRARKE 368

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           +L EYGFRLPS +DNRPL+F+E+       + VSATPG +E+E  Q  I EQIIRPTGL+
Sbjct: 369 SLIEYGFRLPSALDNRPLQFDEFVERINQIVYVSATPGPYEME-VQTNIAEQIIRPTGLL 427

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR  + Q++D+  EI+  A +  R+L+T LTK+MAEDLTE+L E  +RVRY+HS+
Sbjct: 428 DPSIEIRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSD 487

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + T+ER EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T++IQTI
Sbjct: 488 IVTIERAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTI 547

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNVN  VI+YAD +T S+Q AIDET RRR +Q  +N +HNI P+SV + + E+I+ 
Sbjct: 548 GRAARNVNGHVIMYADRVTGSMQRAIDETDRRRAEQEAYNIEHNITPKSVSKDVKELIEL 607

Query: 736 ILLEDAATTNIS---------------------------IDAQQLSLSKKKGKAHLKSLR 768
             +E+   T+                                +   ++ ++    ++ L 
Sbjct: 608 TKIEEDMVTDGKDFSSKKGKKKSSTTGMDHGHEPYVQDISTPKVADITPEELFNKIEELD 667

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +QM  AA  L FE+AA++RD++  L+  
Sbjct: 668 RQMKAAAKQLEFEKAAKLRDQLGELRQQ 695


>gi|301301267|ref|ZP_07207422.1| excinuclease ABC, B subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851143|gb|EFK78872.1| excinuclease ABC, B subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 666

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/657 (54%), Positives = 473/657 (71%), Gaps = 1/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L +GI   EK Q+L+G TG+GKTFT++ VI+ + +P +V+A
Sbjct: 10  FELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKNVNKPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y +  + L++G  +E+ +LL+ L+  Q++R 
Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPHEYREHTISLRVGQEIERNKLLNDLIDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A RV  FG++I+ I E  PLTG+ I + E I I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDESALRVEFFGDEIDRIREIDPLTGETIADREHIAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L TA++ I++EL+ R  EL+ EG+LLEAQRL+QR TYD+EML+  G C 
Sbjct: 250 PATHFMTNEERLGTAIEGIQQELEERTAELKSEGKLLEAQRLQQRTTYDIEMLKEMGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P TL ++ P+D L+ VDESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRHMDGRKPGEAPYTLLDFFPDDFLIVVDESHVTMPQVRGMYNGDRARKQMLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL  EE+       I +SATPG +E E+    +V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLTREEFEKHVNQIIYMSATPGPYEQEKT-SHVVQQIIRPTGLLDPEIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   +   R+ +T LTK+MAEDLT+Y  E  I+V+Y+HS++KTLE
Sbjct: 429 VRPIMGQMDDLVGEINKRVELNERVFVTTLTKKMAEDLTDYFKEMGIKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RDLR+GKFDVLVGINLLREG+D+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTEIVRDLRMGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S++ AI ET RRR  Q ++NK HNI P+++ + I   I      +
Sbjct: 549 NAGGHVIMYADDVTPSMEAAIKETKRRRSIQEQYNKDHNIIPKTIIKPIRAAISISSKVN 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            + TNIS       +SKK+    + +L +QM  AA  L FEEAA +RD +  LK+  
Sbjct: 609 KSDTNISDTVDFADMSKKEQLEMISNLEEQMREAAKKLGFEEAATLRDTVMELKAQI 665


>gi|238854877|ref|ZP_04645207.1| excinuclease ABC subunit B [Lactobacillus jensenii 269-3]
 gi|282931589|ref|ZP_06337082.1| excinuclease ABC, B subunit [Lactobacillus jensenii 208-1]
 gi|238832667|gb|EEQ24974.1| excinuclease ABC subunit B [Lactobacillus jensenii 269-3]
 gi|281304200|gb|EFA96309.1| excinuclease ABC, B subunit [Lactobacillus jensenii 208-1]
          Length = 681

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/658 (51%), Positives = 457/658 (69%), Gaps = 2/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQ  AI +L  G  +  K Q+L G TG+GKTFTMA +I  + +P +V++
Sbjct: 10  FDLVSKYKPAGDQGQAIDKLTAGFKAGAKEQILQGATGTGKTFTMANIIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT +L+ERND +VV+SVSCIYG+G    Y+  ++ L  G   ++  LL  L+  QY R 
Sbjct: 130 RATSALMERNDVVVVASVSCIYGLGDPREYAASVLSLHEGQEYDRNVLLRDLINIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   + A+RV  FG++I+ I E   LTG+ I   + + ++
Sbjct: 190 DIDFQRGRFRVRGDIVEIFPAGNSNHAYRVEFFGDEIDRIVEVDSLTGEVIGERDQVSLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I +E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNEEQMKQALKRISQEMDLQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  + GR  GEPP TL ++ P+D L+ +DESH T+P+I  MY GD  RK TL +Y
Sbjct: 310 GIENYSAPIEGRKAGEPPHTLLDFFPDDFLILIDESHATMPEIRAMYNGDRKRKETLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL +  G IVEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQILYVSATPGDYELNRT-GKIVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIQGQIDDLVGEINKRIDRDERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+ DLR G FDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   LIQT+GRAAR
Sbjct: 489 RMQILHDLRKGDFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLIQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD IT S+++AIDET RRREKQ+  NK+H I P+++ + I +VI       
Sbjct: 549 NSDGTVIMYADKITDSMRIAIDETRRRREKQIAFNKEHGIVPKTIVKPIRDVISITKPVK 608

Query: 741 AATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                 S  +     L+KK+ +  +K+L +QM  AA  L+FE AA +RD I  L++S 
Sbjct: 609 EEKEKESFAELNFDELTKKQKQTMIKNLTEQMQEAAKKLDFEAAANLRDAIMELQNSV 666


>gi|295692552|ref|YP_003601162.1| uvrABC system protein b [Lactobacillus crispatus ST1]
 gi|295030658|emb|CBL50137.1| UvrABC system protein B [Lactobacillus crispatus ST1]
          Length = 681

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/658 (50%), Positives = 465/658 (70%), Gaps = 3/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + +P +V+ 
Sbjct: 10  FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIAKLNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L+ERND +VV+SVSCIYG+G  + Y++ ++ +  G+  ++  LL  LV  QY R 
Sbjct: 130 ATTSALMERNDVVVVASVSCIYGLGDPKEYARSVLMIHEGEEYDRNTLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+   + A+R+  FG++I+ I E   LTG+ I   ++I ++
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPAGNSNHAYRIEFFGDEIDRIVEVDSLTGEVIGERDSISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L  A+  I +E+K+++ + E EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNDEQLRRALGAISKEMKLQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERT-DHKVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVGEINKRIDRHERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+QT+GRAAR
Sbjct: 489 RMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738
           N N +VI+YADTIT S++ AI  T RRR+ Q+E NK+H I P+++ + I +VI       
Sbjct: 549 NANGEVIMYADTITDSMRAAIKATKRRRKIQMEFNKEHGITPKTIIKPIQDVISITKPSS 608

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           E    ++   D     L+ K+ K  + +L++QM  AA  L+FEEAA +RD I  L+ S
Sbjct: 609 EKEEKSDSFADLNFDELTAKQKKTMISNLQEQMQEAAKKLDFEEAANLRDAIMELQKS 666


>gi|227877198|ref|ZP_03995272.1| excinuclease ABC subunit B [Lactobacillus crispatus JV-V01]
 gi|256848938|ref|ZP_05554372.1| excinuclease ABC subunit B [Lactobacillus crispatus MV-1A-US]
 gi|262045719|ref|ZP_06018683.1| excinuclease ABC, B subunit [Lactobacillus crispatus MV-3A-US]
 gi|312977728|ref|ZP_07789475.1| excinuclease ABC subunit B [Lactobacillus crispatus CTV-05]
 gi|227863252|gb|EEJ70697.1| excinuclease ABC subunit B [Lactobacillus crispatus JV-V01]
 gi|256714477|gb|EEU29464.1| excinuclease ABC subunit B [Lactobacillus crispatus MV-1A-US]
 gi|260573678|gb|EEX30234.1| excinuclease ABC, B subunit [Lactobacillus crispatus MV-3A-US]
 gi|310895467|gb|EFQ44534.1| excinuclease ABC subunit B [Lactobacillus crispatus CTV-05]
          Length = 676

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/658 (50%), Positives = 464/658 (70%), Gaps = 3/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + +P +V+ 
Sbjct: 10  FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIAKLNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L+ERND +VV+SVSCIYG+G  + Y++ ++ +  G+  ++  LL  LV  QY R 
Sbjct: 130 ATTSALMERNDVVVVASVSCIYGLGDPKEYARSVLMIHEGEEYDRNTLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+   + A+R+  FG++I+ I E   LTG+ I   E+I ++
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPAGNSNHAYRIEFFGDEIDRIVEVDSLTGEVIGERESISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L  A+  I +E+K+++ + E EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNDEQLRRALGAISKEMKLQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERT-DHKVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVGEINKRIDRHERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+QT+GR AR
Sbjct: 489 RMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRTAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738
           N N +VI+YADTIT S++ AI  T RRR+ Q+E NK+H I P+++ + I +VI       
Sbjct: 549 NANGEVIMYADTITDSMRAAIKATKRRRKIQMEFNKEHGITPKTIIKPIQDVISITKPSS 608

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           E    ++   D     L+ K+ K  + +L++QM  AA  L+FEEAA +RD I  L+ S
Sbjct: 609 EKEEKSDSFADLNFDELTAKQKKTMISNLQEQMQEAAKKLDFEEAANLRDAIMELQKS 666


>gi|312870319|ref|ZP_07730447.1| excinuclease ABC, B subunit [Lactobacillus oris PB013-T2-3]
 gi|311094203|gb|EFQ52519.1| excinuclease ABC, B subunit [Lactobacillus oris PB013-T2-3]
          Length = 681

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/664 (50%), Positives = 461/664 (69%), Gaps = 5/664 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +DY P+GDQP AI QL KGI + +K Q+LLG TG+GKTFT++ VI  + +P ++++
Sbjct: 10  FDLVSDYQPTGDQPEAIDQLTKGIENGDKAQILLGATGTGKTFTISNVIANVNKPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++R+
Sbjct: 70  HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRN 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LLERND IVV+SVS I+G+G+   Y   ++ L +G  +++  LL  LV  QY R 
Sbjct: 130 AATTALLERNDVIVVASVSSIFGLGNPNEYQNSVISLHVGQEIDRDFLLRQLVTIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   + A R+  FG++I+ I E   LTG+   + E + I+
Sbjct: 190 DIDFQRGRFRVHGDVVEIFPASHSETALRIEFFGDEIDRIREVDALTGEVKGDREEVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I++++K ++ +   EG LLEA+RL+QR TYD+EM+   G   
Sbjct: 250 PATHFMTNEDIMDVALPEIEQDMKKQVKKFTDEGNLLEAERLQQRTTYDIEMMREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+  R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRYMDRRKPGEPPYTLLDFFPKDYLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + +SATPG +E EQ    + +QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLNEFEQHVNQVVYMSATPGPYEQEQT-DHVAQQIIRPTGLLDPTIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++++  EIN   ++  R+ +T LTK+M+EDLT+YL +  ++V+Y+HS++KTLE
Sbjct: 429 VRPVMGQIDNLVGEINKRIERHERVFVTTLTKKMSEDLTDYLKDLGLKVKYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 489 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           N +  VI+YAD +T+S+Q AIDET RRR  Q+++N+ H+I P ++ + I E I       
Sbjct: 549 NEHGAVIMYADEVTESMQKAIDETKRRRSIQMKYNEDHHITPHTIVKPIQEAISATKETA 608

Query: 739 --EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              + A +          LSK      +  L +QM  AA  L+FE+AA +RD +  LK+ 
Sbjct: 609 DTGEQADSTEFTTKDFAKLSKDAQANMVDELTEQMRAAAKRLDFEQAATLRDTVMELKAQ 668

Query: 797 PYFQ 800
              +
Sbjct: 669 MTGK 672


>gi|190573619|ref|YP_001971464.1| excinuclease ABC subunit B [Stenotrophomonas maltophilia K279a]
 gi|190011541|emb|CAQ45159.1| putative UvrABC system protein B (protein UvrB) (excinuclease ABC
           subunit B) [Stenotrophomonas maltophilia K279a]
          Length = 674

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/670 (55%), Positives = 485/670 (72%), Gaps = 11/670 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIA+L     +    Q LLGVTGSGKT+T+A VI+ +Q+P ++MA
Sbjct: 5   FELVSPYSPAGDQPDAIAKLTSNFEAGIAKQTLLGVTGSGKTYTIANVIQNVQKPTLIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++LL R D IVV++VS IYG+G+ E Y  + + L  G+ ++Q++L++ L + QY R 
Sbjct: 125 AATKTLLSRPDAIVVATVSAIYGLGAPEDYLSLRLILSKGERIDQRDLINHLTQLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RGTFRV G+ I++FP+  +  A R+ +F  ++E+I+ F PLTG+ +RN++   +Y
Sbjct: 185 EYELQRGTFRVRGEVIDVFPAESDSEALRIELFDGEVEKITLFDPLTGETMRNMQRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R  +  A++ IK ELK RL +L  E +L+EAQRL QR  +D+EM+   G C 
Sbjct: 245 PKTHYATTRERVLAAVETIKVELKERLEQLYAENKLVEAQRLAQRTQFDIEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+N GEPPPTLF+Y+P D+LL +DESHVTIPQI  M++GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKNAGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P  I VSATPG +E  +    I E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARCPRAIYVSATPGPYEYREAGDEITELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E N   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS+V T+E
Sbjct: 425 IRPVGTQVDDLMSEANARIKAGDRVLVTTLTKRMAENLTEYLTEHGIRVRYLHSDVDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  K ILYAD +T+S+Q AIDET RRR KQ+E+N++H I P+SV   I++V++    + 
Sbjct: 545 NVRGKAILYADKVTRSMQAAIDETDRRRAKQVEYNEEHGIVPRSVARPIVDVLEGARSDA 604

Query: 741 AATTN-----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           A                   A   SL   +  A LK+L +QM+  A +L FE+AAR+RD+
Sbjct: 605 AEKEAKKGKGKGRAGVAEDGADYRSLGPAQLAARLKALEQQMYQHAKDLEFEDAARVRDQ 664

Query: 790 IKRLKSSPYF 799
           I++LK +   
Sbjct: 665 IRQLKEASLG 674


>gi|238020774|ref|ZP_04601200.1| hypothetical protein GCWU000324_00664 [Kingella oralis ATCC 51147]
 gi|237867754|gb|EEP68760.1| hypothetical protein GCWU000324_00664 [Kingella oralis ATCC 51147]
          Length = 677

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/667 (53%), Positives = 476/667 (71%), Gaps = 7/667 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLNQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIITTLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G     V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHHRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P ++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPSNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P TI VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++ ++ID +  
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYH 607

Query: 739 EDAATTNISIDAQQLSL------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           E+           +  +      +++     +  L K M  AA +L FEEAA IRD I+ 
Sbjct: 608 EEDGGKGRLKGKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVIRDRIRG 667

Query: 793 LKSSPYF 799
           +K    F
Sbjct: 668 IKEGLLF 674


>gi|282849045|ref|ZP_06258434.1| excinuclease ABC, B subunit [Veillonella parvula ATCC 17745]
 gi|282581320|gb|EFB86714.1| excinuclease ABC, B subunit [Veillonella parvula ATCC 17745]
          Length = 725

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/688 (51%), Positives = 481/688 (69%), Gaps = 28/688 (4%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    F+++  + P+GDQP AI  L +GI   E  Q+LLG TG+GKTFTMAKVIEA+Q+P
Sbjct: 9   EGGQPFKVEAPFAPTGDQPTAIQSLTEGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKP 68

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +++A NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++I
Sbjct: 69  TLIIAHNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEI 128

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SL ER D I+V+SVSCIYG+G  E YS +++ L++G +  + E+L+ LV  
Sbjct: 129 DKLRHSATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQTKSRDEILAKLVDI 188

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D+  IRGTFRV GD+I+IFP+   + A RV +FG++I+ + E   LTG+ I   +
Sbjct: 189 QYTRNDMNFIRGTFRVQGDTIDIFPAAYSERAIRVELFGDEIDRLVEVDSLTGEVIAERK 248

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + +Y  SHYVT +  +N A++ I+ EL  +L +L+   RLLEAQRLEQR  YD+EM++ 
Sbjct: 249 HVAVYPASHYVTTKEKMNIAVERIEAELDEQLAKLKAADRLLEAQRLEQRTRYDIEMMQE 308

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR+++ R  GE P TL +Y P+D L+ VDESHVT+PQI  MY GD  RK 
Sbjct: 309 MGYCSGIENYSRHMSERKAGEAPFTLIDYFPDDFLIMVDESHVTMPQIRAMYNGDRARKE 368

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           +L EYGFRLPS +DNRPL+F+E+       + VSATPG +E+E  +  I EQIIRPTGL+
Sbjct: 369 SLIEYGFRLPSTLDNRPLQFDEFVERINQIVYVSATPGPYEME-VETNIAEQIIRPTGLL 427

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR  + Q++D+  EI+  A +  R+L+T LTK+MAEDLTE+L E  +RVRY+HS+
Sbjct: 428 DPSIEIRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSD 487

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + T+ER EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T++IQTI
Sbjct: 488 IVTIERAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTI 547

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNVN  VI+YAD +T S+Q AIDET RRR  Q  +N +HNI P+SV + + E+I+ 
Sbjct: 548 GRAARNVNGHVIMYADRVTGSMQRAIDETDRRRAVQEAYNIEHNITPKSVSKDVKELIEL 607

Query: 736 ILLED---------------------------AATTNISIDAQQLSLSKKKGKAHLKSLR 768
             +E+                            +    +   +   ++ ++    ++ L 
Sbjct: 608 TKIEEDMVTDGKGLSSKKGKQKKSSEGMDHGHESYVQDTSAPKVADITPEELYNKIEELD 667

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +QM  AA  L FE AA++RD++  L+  
Sbjct: 668 RQMKAAAKQLEFETAAKLRDQLGVLRQQ 695


>gi|256851463|ref|ZP_05556852.1| excinuclease ABC, B subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260660884|ref|ZP_05861799.1| excinuclease ABC, B subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282933463|ref|ZP_06338839.1| excinuclease ABC, B subunit [Lactobacillus jensenii 208-1]
 gi|297206278|ref|ZP_06923673.1| excision endonuclease subunit UvrB [Lactobacillus jensenii JV-V16]
 gi|256616525|gb|EEU21713.1| excinuclease ABC, B subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260548606|gb|EEX24581.1| excinuclease ABC, B subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281302394|gb|EFA94620.1| excinuclease ABC, B subunit [Lactobacillus jensenii 208-1]
 gi|297149404|gb|EFH29702.1| excision endonuclease subunit UvrB [Lactobacillus jensenii JV-V16]
          Length = 681

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/658 (51%), Positives = 458/658 (69%), Gaps = 2/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + P+GDQ  AI +L  G  +  K Q+L G TG+GKTFTMA +I  + +P +V++
Sbjct: 10  FDLVSKFKPAGDQEQAIDKLTAGFKAGAKEQILQGATGTGKTFTMANIIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT +L+ERND +VV+SVSCIYG+G  + Y+  ++ L  G   E+  LL  LV  QY R 
Sbjct: 130 RATSALMERNDVVVVASVSCIYGLGDPKEYAASVLSLHEGQEYERNVLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   D A+RV  FG++I+ I E   LTG+ I   + I ++
Sbjct: 190 DIDFQRGRFRVRGDIVEIFPAGNSDHAFRVEFFGDEIDRIVEVDSLTGEVIGERDQISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+K I +E+ +++ + E EG+LLEAQR++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNEEQMKQALKRISQEMDLQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  + GR  GEPP TL ++ P+D L+ +DESH T+P+I  MY GD  RK TL +Y
Sbjct: 310 GIENYSAPIEGRKAGEPPHTLLDFFPDDFLILIDESHATMPEIRAMYNGDRKRKETLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+ EE+       + VSATPG +EL +    +VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLEEFEKHVNQILYVSATPGDYELNRT-NKVVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN   ++  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIQGQIDDLVGEINKRIERDERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+ DLR G FDVL+GINLLREG+D+PE  LVAILDADKEGFLRS   LIQT+GRAAR
Sbjct: 489 RMQILHDLRKGDFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLIQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD IT S+++AIDET RRREKQ+  N++H I P+++ + I +VI       
Sbjct: 549 NSDGMVIMYADKITDSMKIAIDETRRRREKQIAFNEEHGITPKTIVKPIRDVISITKPVK 608

Query: 741 AATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                 S  D     L+KK+ +A +K+L  QM  AA  L+FE AA +RD I  L++S 
Sbjct: 609 EEKEKESFADLNFDELTKKQKQAMIKNLTDQMQDAAKKLDFEAAANLRDAIMELQNSV 666


>gi|223042856|ref|ZP_03612904.1| excinuclease ABC, B subunit [Staphylococcus capitis SK14]
 gi|314933067|ref|ZP_07840433.1| excinuclease ABC subunit B [Staphylococcus caprae C87]
 gi|222443710|gb|EEE49807.1| excinuclease ABC, B subunit [Staphylococcus capitis SK14]
 gi|313654386|gb|EFS18142.1| excinuclease ABC subunit B [Staphylococcus caprae C87]
          Length = 661

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/657 (52%), Positives = 469/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +++ P GDQP AI +++ G+++ ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKLNSEFEPQGDQPQAIQKIVDGVNNGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 126 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ IR  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVIREREHFAI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    +  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQI GMY GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRPLGSTPFTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLVD 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP +
Sbjct: 366 HGFRLPSALDNRPLKFEEFEDKTKQLVYVSATPGPYELEHTDE-MVEQIIRPTGLLDPKI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R    Q++D+  EI     +  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 DVRPTENQIDDLLSEIQERIDRDERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +D +VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSDRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD IT S+Q AIDET RRR+ Q  HNK+H I P+++ +KI +VI   +  
Sbjct: 545 RNDKGEVIMYADKITDSMQYAIDETQRRRDIQTAHNKEHGITPKTINKKIHDVISATVES 604

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D        +  +  ++KK+ +  ++++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 605 DETNDQKQTELPK-KMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKAE 660


>gi|27467459|ref|NP_764096.1| excinuclease ABC subunit B [Staphylococcus epidermidis ATCC 12228]
 gi|38258770|sp|Q8CPZ0|UVRB_STAES RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|27315002|gb|AAO04138.1|AE016745_237 exinuclease ABC subunit B [Staphylococcus epidermidis ATCC 12228]
 gi|329723253|gb|EGG59783.1| excinuclease ABC, B subunit [Staphylococcus epidermidis VCU144]
          Length = 661

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/657 (53%), Positives = 471/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++++++ P GDQP AI +++ G++ R++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKLKSEFEPQGDQPQAIQKIVDGVNERKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT SL ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +E+ ELL  LV  QY R
Sbjct: 126 HSATSSLFERDDVIIIASVSCIYGLGNPEEYKNLVVSVRVGMEMERSELLRKLVDVQYSR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ IR  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVIREREHFTI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    +  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQI GMY GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLID 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP +
Sbjct: 366 HGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYELEHTDE-MVEQIIRPTGLLDPKI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R    Q++D+  EI     +  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 DVRPTENQIDDLLSEIQDRVDKDERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +D +VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSDRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD IT S+Q AIDET RRRE Q+ HNK+H I P+++ +KI +VI   +  
Sbjct: 545 RNDKGEVIMYADKITDSMQYAIDETQRRREIQIAHNKEHGITPKTINKKIHDVISATVES 604

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D        +  +  ++KK+ +  ++++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 605 DETNQQQQTELPK-KMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKAE 660


>gi|332678482|gb|AEE87611.1| Excinuclease ABC subunit B [Francisella cf. novicida Fx1]
          Length = 668

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/667 (53%), Positives = 479/667 (71%), Gaps = 7/667 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + T Y P+GDQP AI  L+ GI++  + Q+LLGVTGSGKT+TMA VI+  Q+P +
Sbjct: 1   MNKFNLVTKYAPAGDQPQAIQSLVNGINTGLQHQVLLGVTGSGKTYTMANVIQQTQKPCL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK +F  NAVEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++
Sbjct: 61  ILAHNKTLAAQLYSEFKQYFRDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY
Sbjct: 121 MRLSATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +KI+++   
Sbjct: 181 SRNDMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKIKSLHRA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+ ++HYV  +      ++ IK+ELK R+   EKEG+LLEAQR+EQR  YD+EM++  G
Sbjct: 241 TIFPSTHYVASKERKEIVIEEIKKELKERVKYFEKEGKLLEAQRIEQRTKYDIEMIQELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RK+ L
Sbjct: 301 YCTGIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   V+Q+IRPTGL+DP
Sbjct: 361 VNYGFRLPSALDNRPLKFNEFEKLLPQTIYVSATPANYELEKSQN-TVQQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R    QVED   EIN A  +  R+L+T LTK+MAE+LTEYL E  + VRY+HS++ 
Sbjct: 420 EVFVRPVAIQVEDALSEINKAIAKEERVLITTLTKKMAENLTEYLSEHGVNVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--P 735
            ARN N + ILYAD +TKS+Q A+DET RRR+ Q E+N+KHNI P+++ + I +++D  P
Sbjct: 540 VARNQNGRAILYADVVTKSMQKAMDETLRRRKLQDEYNQKHNIVPKTIIKNIDDMLDSSP 599

Query: 736 ILLEDAATTNISIDAQQLSLSK----KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            + + A   N+ +    + +S      +    +K+L K+M   A  L FE+A  IRD+I 
Sbjct: 600 EMQKRAYKNNLRLKVDDVDVSAILGMTEATKVIKALEKRMRAYAKELEFEKATTIRDKIT 659

Query: 792 RLKSSPY 798
            +K    
Sbjct: 660 EIKQKFI 666


>gi|17228627|ref|NP_485175.1| excinuclease ABC subunit B [Nostoc sp. PCC 7120]
 gi|20532282|sp|Q8YXS9|UVRB_ANASP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|17130478|dbj|BAB73089.1| excinuclease ABC subunit B [Nostoc sp. PCC 7120]
          Length = 665

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/666 (52%), Positives = 458/666 (68%), Gaps = 4/666 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F +Q  + P+GDQP+AIAQL+  I    + Q LLG TG+GKTF++A VIE + RP +
Sbjct: 1   MTEFGLQAPFSPTGDQPSAIAQLVASIEGGNRYQTLLGATGTGKTFSIAAVIEKIGRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK ++IN++ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPNNAVEYFVSYYDYYQPEAYIPVTDTYIEKTAAINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  + L+IG  V Q+E+L  L   QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPAEYLKAAIPLQIGMEVNQREILRDLASVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ I +++ +
Sbjct: 181 SRNDVEMGRGRFRVRGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEIINSLQAV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP   L  A + I  ELK R  ELE+ G+L+EAQR++QR  YDLEML   G
Sbjct: 240 NIYPARHFVTPEERLEVACEDIAYELKQRKAELEETGKLVEAQRIDQRTRYDLEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  GEPP +L +Y P+D LL +DESHVT+PQI GMY GD  RK  L
Sbjct: 300 YCNGVENYSRHLAGRQAGEPPESLIDYFPKDWLLVIDESHVTVPQIRGMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+ EE+       I VSATPG+WELE  +  IVEQ+IRPTG++DP
Sbjct: 360 IEHGFRLPSAADNRPLKAEEFWQKVNQCIFVSATPGNWELEISENRIVEQVIRPTGVIDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    Q++D+  EI        R+L+T LTKRMAEDLTEYL E  ++VRY+HSE+ 
Sbjct: 420 EISVRPTEGQIDDLLGEIKDRIDLHERVLITTLTKRMAEDLTEYLQEHGVKVRYLHSEIN 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           +++RIEI++DLR G FDVLVG+NLLREGLD+PE  LVAI+DADKEGFLR++ SLIQTIGR
Sbjct: 480 SIQRIEILQDLRQGSFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR++  + ILYAD +T S+  AI+ET RRR  Q+ +NK H I PQ + +K    I   L
Sbjct: 540 AARHIRGQAILYADNMTDSMIKAIEETDRRRGIQVAYNKLHGITPQPIVKKSSNAILSFL 599

Query: 738 LEDA---ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  AT    ++     L  ++    +  L  QM  A+  L FEEAA++RD IK+L+
Sbjct: 600 EVSRRLNATDLKVVEEHIDELPLEEIPNLIDKLEAQMKEASKKLEFEEAAKLRDRIKQLR 659

Query: 795 SSPYFQ 800
                +
Sbjct: 660 DKLVGR 665


>gi|167463462|ref|ZP_02328551.1| excinuclease ABC subunit B [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 667

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/659 (53%), Positives = 465/659 (70%), Gaps = 2/659 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K    F++ ++Y P GDQP AIA+L++G+   +  Q LLG TG+GKTFT A+VI  + RP
Sbjct: 8   KSDKKFELVSEYSPQGDQPKAIAELVEGVKQGKAHQTLLGATGTGKTFTAAQVIAQLNRP 67

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LAAQL SEFK FFP+NAV YFVSYYDYYQPEAY+P +DTYIEK+SSIN++I
Sbjct: 68  TLVIAHNKTLAAQLASEFKEFFPNNAVSYFVSYYDYYQPEAYIPSSDTYIEKDSSINDEI 127

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SL ER D IVV+SVSCIYG+GS + Y  +++ L++G    + ++L  LV  
Sbjct: 128 DKLRHSATSSLFERRDIIVVASVSCIYGLGSPKEYGSLLLSLRVGMEKSRNDILRRLVDI 187

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY+R D+  +RGTFRV GD IEIFP+   + A RV +FG++IE I+E   LTG+ +   E
Sbjct: 188 QYQRNDMNFVRGTFRVRGDVIEIFPASRSEQAVRVELFGDEIERITEIDVLTGEILGERE 247

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I I+  SH+VT       A+K I+ EL+ RL EL  +G+LLEAQRLEQR  YD+EM+  
Sbjct: 248 HIAIFPASHFVTHEDKTKLAVKNIERELEGRLEELRGQGKLLEAQRLEQRTRYDMEMMLE 307

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYS  LT R  G  P TL +Y P+D L+ +DESHVT+PQI  MY GD  RK 
Sbjct: 308 MGFCSGIENYSGPLTFRERGSTPYTLLDYFPDDMLVMIDESHVTLPQIRAMYNGDQARKT 367

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L E+GFRLPS +DNRPL+ EE+       I +SATPG +ELE C   +VEQIIRPTGL+
Sbjct: 368 VLVEHGFRLPSALDNRPLKLEEFEQKVKQAIYISATPGPYELEHCPE-MVEQIIRPTGLL 426

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +E+R  + Q++D+  E+     +  R+L+T LTK+MAEDLT+YL E  I+VRY+HS+
Sbjct: 427 DPIIEVRPTKGQIDDLLAEVQDRIAKDERVLVTTLTKKMAEDLTDYLKEVGIKVRYLHSD 486

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER++I+RDLRLG F VLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTI
Sbjct: 487 IKTLERMQILRDLRLGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTI 546

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN   +VI+Y D IT S+  AI ET RRR  Q  +NK+H I P +V +KI +VI+ 
Sbjct: 547 GRAARNSEGRVIMYGDKITDSMDKAIRETERRRAIQEAYNKEHGITPTTVAKKIRDVIEA 606

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             + +  T  ++ + +   +SK+     ++ L  +M  AA NL FE AA +RD +  LK
Sbjct: 607 TKVAEQKTEYLA-EVKTAKMSKRDRMKLIERLEAEMKEAAKNLQFERAAELRDAVLELK 664


>gi|119509060|ref|ZP_01628211.1| excinuclease ABC subunit B [Nodularia spumigena CCY9414]
 gi|119466226|gb|EAW47112.1| excinuclease ABC subunit B [Nodularia spumigena CCY9414]
          Length = 665

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/666 (53%), Positives = 454/666 (68%), Gaps = 4/666 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F +Q  + P+GDQP AIAQL   I S  + Q LLG TG+GKTF++A VIE + RP +
Sbjct: 1   MTGFCLQAPFIPTGDQPQAIAQLTSSIQSGNRYQTLLGATGTGKTFSIAAVIEKVGRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFPHNAVEYFVSYYDYYQPEAY+P +DTYIEK SSIN++ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPHNAVEYFVSYYDYYQPEAYIPVSDTYIEKTSSINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  +  +IG  V Q+++L  L   QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPSEYLKAAIPFQIGMEVNQRQILRDLASVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ IR++E +
Sbjct: 181 SRNDIEMGRGRFRVRGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEIIRSLEAV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+VTP+  L  A   I  ELK +  ELE+ G+LLEAQR++QR  YDLEML   G
Sbjct: 240 NVYPARHFVTPQERLEIACDEIAAELKQQQAELEQAGKLLEAQRIDQRTRYDLEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  G PP  L +Y P+D LL +DESHVT+PQI GMY GD  RK  L
Sbjct: 300 FCNGVENYSRHLAGRQAGAPPECLIDYFPKDWLLVIDESHVTVPQIRGMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+       I VSATPG WELE  +G I +QIIRPTG++DP
Sbjct: 360 IDHGFRLPSAADNRPLKAEEFWQKVNQCIFVSATPGDWELEISEGHIADQIIRPTGVIDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    Q++D+  EI        R+L+T LTKRMAEDLTEYL + NI+VRY+HSE+ 
Sbjct: 420 EISVRPTEGQIDDLLGEIKDRVDLQERVLITTLTKRMAEDLTEYLQDHNIKVRYLHSEIN 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEI++DLR GKFDVLVG+NLLREGLD+PE  LVAI+DADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEILQDLRAGKFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR++  + I+YAD +T S+  AIDET RRR  Q+ +N+ H I PQ + ++    I   L
Sbjct: 540 AARHIRGQAIMYADNMTGSMIKAIDETDRRRGIQMAYNRTHGITPQPIIKRSSNAILSFL 599

Query: 738 LEDA---ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  AT    +D     L  ++    +  L  QM  AA  L FEEA ++RD IK L+
Sbjct: 600 DVSRRLNATDLKVVDEHIDELPLEEIPGLIGKLEAQMKDAAKKLEFEEAGKLRDRIKHLR 659

Query: 795 SSPYFQ 800
                +
Sbjct: 660 DKMLGR 665


>gi|298528342|ref|ZP_07015746.1| excinuclease ABC, B subunit [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511994|gb|EFI35896.1| excinuclease ABC, B subunit [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 664

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/663 (53%), Positives = 470/663 (70%), Gaps = 2/663 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F + ++Y P GDQ  AI  L++ +      Q+LLGVTGSGKTFTMA VI    RPA+
Sbjct: 1   MTAFNLVSEYTPQGDQVEAIEHLVQNLDQGLDHQVLLGVTGSGKTFTMANVIARSNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           VMAPNK LAAQLY+EF+  FP NAVEYFVSYYDYYQPEAY+PRTDTYIEK+SSIN+ ID+
Sbjct: 61  VMAPNKTLAAQLYNEFRLLFPENAVEYFVSYYDYYQPEAYLPRTDTYIEKDSSINDDIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+AT +LL R D ++V+SVSCIYG+GS E YS+MI+ L+ G +++  EL++ LV+ QY
Sbjct: 121 LRHAATHALLTRRDVLIVASVSCIYGLGSPEYYSKMIIPLEEGQTMDMDELMARLVEVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D    RGTFRV GD +EI P++  + A R+  FG+ +E + E  PLTG+    ++  
Sbjct: 181 ERNDYDFHRGTFRVRGDVLEIIPAYRMEQALRIEFFGDTVESLFETDPLTGEIKSRLKKT 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SHYV+ +  L  AM  I++EL+ RL   +++  L+EAQRLEQR   DLEM++  G
Sbjct: 241 VIYPGSHYVSDQDNLQRAMNDIRDELRHRLNWFQEQNMLVEAQRLEQRTQLDLEMIQEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L GR  G+PP  L +Y P+D LLF+DESH+TIPQ+ GMY GD  RK TL
Sbjct: 301 YCNGIENYSRHLDGRRQGQPPACLLDYFPDDYLLFIDESHITIPQVGGMYNGDLSRKKTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS +DNRPL F+E+      T+ VSATPG WE+++ QG++ EQIIRPTGLVDP
Sbjct: 361 VDFGFRLPSALDNRPLSFDEFQERMGQTVYVSATPGPWEMDKSQGVLAEQIIRPTGLVDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    Q++D+ +E     +   R+L+T LTKRMAEDLT+YL ER +R +Y+HS++ 
Sbjct: 421 EIEVRPTHGQMDDLLNECLQRQENDQRVLVTTLTKRMAEDLTDYLQERGVRSKYLHSDID 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+ II+ LR G+F VLVGINLLREGLDIPE  LV+ILDADKEGFLRS  SLIQT GR
Sbjct: 481 TLERVAIIQALRAGEFYVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTRSLIQTFGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+++VI+YAD +T S++ A+DET RRR KQ E N +H I P S+ +     +  + 
Sbjct: 541 AARNVDARVIMYADRVTDSMRRAMDETERRRSKQKEFNLEHGIVPASIVKAGPNTLYEMH 600

Query: 738 LEDAATTN--ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +         + +  +     +K +  +KSL ++M   A +L FEEAAR+RD I+ LK+
Sbjct: 601 NQPEPEQMGLAAEEISRYGADPQKLEKEIKSLERKMRKLAQDLEFEEAARVRDRIQDLKN 660

Query: 796 SPY 798
           +  
Sbjct: 661 ALM 663


>gi|282882169|ref|ZP_06290808.1| excinuclease ABC, B subunit [Peptoniphilus lacrimalis 315-B]
 gi|281297934|gb|EFA90391.1| excinuclease ABC, B subunit [Peptoniphilus lacrimalis 315-B]
          Length = 671

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/656 (54%), Positives = 467/656 (71%), Gaps = 2/656 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
               D   F++ +DY P+GDQP AI +L++G++   K Q LLGVTGSGKTFTMA VIE +
Sbjct: 4   KKVSDTVKFKIHSDYKPTGDQPQAIDKLVEGLNKGYKHQTLLGVTGSGKTFTMANVIERV 63

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRPA+V+A NK LA QL SE K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N
Sbjct: 64  QRPALVIAHNKTLAYQLCSELKEFFPENAVEYFVSYYDYYQPEAYVPMTDTFIEKDSSVN 123

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           ++ID++RHSAT SL ER D I+V+SVSCIYG+G    Y  + + L+ G   ++ E++S L
Sbjct: 124 DEIDKLRHSATMSLFERRDVIIVASVSCIYGLGDPIDYENLAISLRPGMIRDRNEIMSKL 183

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QY R D    RGTFRV GD +EIFP+   + + RV  FG++I+ ISE   LTG+ +R
Sbjct: 184 VDIQYVRNDFDFSRGTFRVRGDVLEIFPASSSEKSIRVEFFGDEIDRISEVDALTGKVLR 243

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            +    I   SHY T +  +  A+  I+EEL+ RL  L+ + +LLEAQRLEQR  YDLEM
Sbjct: 244 LLTHAYITPASHYATTKTKVEKAIVTIEEELEERLKVLKDQDKLLEAQRLEQRTRYDLEM 303

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           LE  G C  IENYSR+L+ R  G  P TL +Y P+D +  +DESH +IPQI GM+ GD  
Sbjct: 304 LEEMGYCNGIENYSRHLSQRPAGSRPYTLIDYFPDDFITIIDESHQSIPQIRGMFNGDRS 363

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL EYGFRLPS +DNRPLRF E+  +    I VSATPG +E E  +    EQIIRPT
Sbjct: 364 RKETLVEYGFRLPSALDNRPLRFFEFESMMKQCIYVSATPGPYEREH-EENSAEQIIRPT 422

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP + +R  + Q++D+  EIN   ++  R+L+T LTKRMAEDLT++  E  I+  YM
Sbjct: 423 GLLDPQIFVRPVKNQIDDLVSEINKTVEKKERVLVTTLTKRMAEDLTKHFKEIGIKATYM 482

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V+TLER++II+DLR  K DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLI
Sbjct: 483 HSDVETLERMQIIKDLRQAKIDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSRTSLI 542

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QT GRAARNV+ KVI+YAD IT+S++  IDET RRR+ Q  +NK+H I P+S+ + I +V
Sbjct: 543 QTAGRAARNVSGKVIMYADNITESMKETIDETNRRRKIQDAYNKEHGIVPKSIIKDIRDV 602

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           ++  L+ ++  +    D +    +K + +A + +L+ QM+ AA+ L+FE+AA IRD
Sbjct: 603 LNTTLVAESDVSFKEEDFEDE-FTKDEIQAMIDALKPQMYEAAEALDFEKAAEIRD 657


>gi|264678870|ref|YP_003278777.1| excinuclease ABC subunit B [Comamonas testosteroni CNB-2]
 gi|262209383|gb|ACY33481.1| excinuclease ABC, B subunit [Comamonas testosteroni CNB-2]
          Length = 688

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/667 (54%), Positives = 483/667 (72%), Gaps = 7/667 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   Y P+GDQPAAI +L++G++  E  Q LLGVTGSGKTFTMA VI  + +PAIV
Sbjct: 20  SPFELFQPYPPAGDQPAAIEKLVEGVNDGESFQTLLGVTGSGKTFTMANVIARLGKPAIV 79

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++M
Sbjct: 80  FAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQM 139

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R S T+S++ER D ++V++VS IYGIG  ESY +MI+ L+ GD++ Q++ ++ L++ QY+
Sbjct: 140 RLSCTKSIMERRDVVIVATVSAIYGIGEPESYHRMIMTLRAGDTLNQRDAIAQLIRMQYQ 199

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD+I++FP+   ++A R+ +F +++E +  F PLTG+  +N+    
Sbjct: 200 RNDQDFSRGTFRVRGDTIDVFPAEHSELAVRIELFDDEVESLQLFDPLTGRVRQNIPRFT 259

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY +SHYVTPR  +  A++ IKEEL  RL +L   G+L+EAQRLEQR  +DLEML   G 
Sbjct: 260 IYPSSHYVTPRDKVLAAVETIKEELAERLKQLVGMGKLVEAQRLEQRTRFDLEMLSEVGH 319

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENY+R+L+   PG+PP TL +Y+P D+++F+DESH  I Q++ MY GD  RK TL 
Sbjct: 320 CKGIENYTRHLSASKPGDPPSTLTDYLPRDAIMFLDESHQMIGQLNAMYNGDRARKTTLV 379

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+       + VSATP  +E     G +VEQ++RPTGLVDP 
Sbjct: 380 EYGFRLPSALDNRPLKFEEFEQRMRQVVFVSATPAEYEKTHA-GQVVEQVVRPTGLVDPE 438

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R A  QV+DV  EI    +   R+L+T LTKRMAE LTEYL +  ++VRY+HS+V T
Sbjct: 439 IEVRPAIHQVDDVLQEIRQRVELEERVLITTLTKRMAEQLTEYLTDNGVKVRYLHSDVDT 498

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 499 VERVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA 558

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN K ILYAD IT+S++ AI ET RRREKQ+  N+ + I P+ + +++ ++ID +  
Sbjct: 559 ARNVNGKAILYADRITESMKKAIGETERRREKQMAFNEANGIVPKQIVKRVKDLIDGVYS 618

Query: 739 EDAATTNISI------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           E +      +       A+   +S+K     +K L KQM   A NL FE+AAR+RD++  
Sbjct: 619 EKSGKEAERLQEQALQQARVEDMSEKDIAKEIKRLEKQMLEHARNLEFEQAARVRDQLSL 678

Query: 793 LKSSPYF 799
           LK   + 
Sbjct: 679 LKQQLFG 685


>gi|254523426|ref|ZP_05135481.1| excinuclease ABC, B subunit [Stenotrophomonas sp. SKA14]
 gi|219721017|gb|EED39542.1| excinuclease ABC, B subunit [Stenotrophomonas sp. SKA14]
          Length = 674

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/670 (55%), Positives = 484/670 (72%), Gaps = 11/670 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIA+L     +    Q LLGVTGSGKT+T+A VI+ +Q+P ++MA
Sbjct: 5   FELVSPYSPAGDQPDAIAKLTSNFEAGIAKQTLLGVTGSGKTYTIANVIQNVQKPTLIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++LL R D IVV++VS IYG+G+ E Y  + + L  G+ ++Q++L++ L + QY R 
Sbjct: 125 AATKTLLSRPDAIVVATVSAIYGLGAPEDYLSLRLILSKGERIDQRDLINHLTQLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RGTFRV G+ I++FP+  +  A R+ +F  ++E+I+ F PLTG+ +RN++   +Y
Sbjct: 185 EYELQRGTFRVRGEVIDVFPAESDSEALRLELFDGEVEKITLFDPLTGETLRNMQRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R  +  A+  IK ELK RL +L  E +L+EAQRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYATTRERVLAAVDTIKVELKERLEQLYAENKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+N GEPPPTLF+Y+P D+LL +DESHVTIPQI  M++GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKNAGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P  I VSATPG +E  +    I E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEERCPRAIYVSATPGPYEYREAGDEITELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E N   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS+V T+E
Sbjct: 425 IRPVGTQVDDLMSEANERIKAGDRVLVTTLTKRMAENLTEYLTEHGIRVRYLHSDVDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  K ILYAD IT+S+Q AIDET RRR KQ+E+N++H I P+SV   I++V++    + 
Sbjct: 545 NVRGKAILYADKITRSMQAAIDETDRRRAKQVEYNEEHGIVPRSVARPIVDVLEGARSDA 604

Query: 741 AATTN-----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           A                   A   SLS  +    LK+L +QM+  A +L FE+AAR+RD+
Sbjct: 605 AEKEAKKGKGKSRAGVAEEGADYRSLSPAQLATRLKALEQQMYQHAKDLEFEDAARVRDQ 664

Query: 790 IKRLKSSPYF 799
           I++LK +   
Sbjct: 665 IRQLKEASLG 674


>gi|299532419|ref|ZP_07045811.1| excinuclease ABC subunit B [Comamonas testosteroni S44]
 gi|298719657|gb|EFI60622.1| excinuclease ABC subunit B [Comamonas testosteroni S44]
          Length = 688

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/667 (54%), Positives = 482/667 (72%), Gaps = 7/667 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   Y P+GDQPAAI +L++G++  E  Q LLGVTGSGKTFTMA VI  + +PAIV
Sbjct: 20  SPFELFQPYPPAGDQPAAIEKLVEGVNDGESFQTLLGVTGSGKTFTMANVIARLGKPAIV 79

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++M
Sbjct: 80  FAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQM 139

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R S T+S++ER D ++V++VS IYGIG  ESY +MI+ L+ GD++ Q++ ++ L++ QY+
Sbjct: 140 RLSCTKSIMERRDVVIVATVSAIYGIGEPESYHRMIMTLRAGDTLNQRDAIAQLIRMQYQ 199

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD+I++FP+   ++A R+ +F +++E +  F PLTG+  +N+    
Sbjct: 200 RNDQDFSRGTFRVRGDTIDVFPAEHSELAVRIELFDDEVESLQLFDPLTGRVRQNIPRFT 259

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYVTPR  +  A++ IKEEL  RL +L   G+L+EAQRLEQR  +DLEML   G 
Sbjct: 260 IYPGSHYVTPRDKVLAAVETIKEELAERLKQLVGMGKLVEAQRLEQRTRFDLEMLSEVGH 319

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENY+R+L+   PG+PP TL +Y+P D+++F+DESH  I Q++ MY GD  RK TL 
Sbjct: 320 CKGIENYTRHLSASQPGDPPSTLTDYLPRDAIMFLDESHQMIGQLNAMYNGDRARKTTLV 379

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+       + VSATP  +E     G +VEQ++RPTGLVDP 
Sbjct: 380 EYGFRLPSALDNRPLKFEEFEQRMRQVVFVSATPAEYEKTHA-GQVVEQVVRPTGLVDPE 438

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R A  QV+DV  EI    +   R+L+T LTKRMAE LTEYL +  ++VRY+HS+V T
Sbjct: 439 IEVRPAIHQVDDVLQEIRQRVELEERVLITTLTKRMAEQLTEYLTDNGVKVRYLHSDVDT 498

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 499 VERVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA 558

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN K ILYAD IT+S++ AI ET RRREKQ+  N+ + I P+ + +++ ++ID +  
Sbjct: 559 ARNVNGKAILYADRITESMKKAIGETERRREKQMAFNEANGIVPKQIVKRVKDLIDGVYS 618

Query: 739 EDAATTNISI------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           E +      +       A+   +S+K     +K L KQM   A NL FE+AAR+RD++  
Sbjct: 619 EKSGKEAERLQEQALQQARVEDMSEKDIAKEIKRLEKQMLEHARNLEFEQAARVRDQLSL 678

Query: 793 LKSSPYF 799
           LK   + 
Sbjct: 679 LKQQLFG 685


>gi|163815024|ref|ZP_02206411.1| hypothetical protein COPEUT_01180 [Coprococcus eutactus ATCC 27759]
 gi|158449707|gb|EDP26702.1| hypothetical protein COPEUT_01180 [Coprococcus eutactus ATCC 27759]
          Length = 662

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/660 (52%), Positives = 474/660 (71%), Gaps = 4/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI +L+KG     + + LLGVTGSGKTFTMA VI+ + +P +
Sbjct: 1   MDHFELVSEYKPTGDQPEAIEKLVKGFQEGNQFETLLGVTGSGKTFTMANVIQQLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYV  TDTYI K+SSIN+ IDR
Sbjct: 61  VLAHNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVASTDTYIAKDSSINDDIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSAT +L++R D IVV+SVSCIYGIG  + Y   ++  ++G   ++ +++  L   QY
Sbjct: 121 MRHSATAALIDRKDVIVVASVSCIYGIGDPDEYRNQMLSFRVGMIKDRDQVIDELTDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RGTFRV GD +EI P    D   R+  FG++I+ I+EF PLTG+  R++   
Sbjct: 181 DRNDMDLQRGTFRVRGDVLEIIPVSTFDDGIRIEFFGDEIDRITEFDPLTGEGKRDLTYT 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++  SHYV  +  +  A+K I+ ELK R+   + + +L+EAQR+E+R  +D+EM+  TG
Sbjct: 241 CLFPASHYVVGQEKMEKALKRIEAELKDRVAYFKSKDKLIEAQRIEERTNFDMEMMRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYS  L GR+ GE P TL ++  +D LL +DESH+T+PQ+  MY GD  RK  L
Sbjct: 301 FCSGIENYSGPLAGRSAGETPSTLLDFFGDDFLLIIDESHMTVPQVGAMYSGDRSRKMNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL F E+       + VSATPG +E E  Q ++ EQIIRPTGL+DP
Sbjct: 361 VDYGFRLPSALDNRPLNFSEFEQKLDQVMFVSATPGKYEEEH-QMLMAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           PVE+R    Q++D+  E+    +QG ++L+T LTKRMAEDLT Y+ + +I+V+Y+HS++ 
Sbjct: 420 PVEVRPVEGQIDDLLKEVRKETEQGHKVLVTTLTKRMAEDLTSYMRDNDIKVKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TMERVEIVRDLRLGVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+  VI+YADTIT S++ A+DET+RRRE Q ++N++H I P+++++ I ++I   +
Sbjct: 540 AARNVDGHVIMYADTITGSMKYALDETSRRREIQQKYNEEHGITPKTIEKSIRDLITIEV 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            ++        D    S++KK+ +  +  L K+M++AA +LNFE AA IRD++K  K++ 
Sbjct: 600 KKEELPDE---DKDAESMTKKELQKVIAKLTKKMNMAAADLNFEVAAEIRDQLKVYKAAL 656


>gi|332283991|ref|YP_004415902.1| excinuclease ABC subunit B [Pusillimonas sp. T7-7]
 gi|330427944|gb|AEC19278.1| excinuclease ABC subunit B [Pusillimonas sp. T7-7]
          Length = 677

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/661 (55%), Positives = 476/661 (72%), Gaps = 1/661 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+   Y P+GDQP AIA L +G++     Q LLGVTGSGKT+TMA VI    RPAIV
Sbjct: 17  SPFQLYQPYPPAGDQPTAIAALTEGMNDGLMYQTLLGVTGSGKTYTMANVIARTGRPAIV 76

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+E + FFP+NAVEYFVSYYDYYQPEAYV   D +IEK+SSINE I++M
Sbjct: 77  LAPNKTLAAQLYAEMREFFPNNAVEYFVSYYDYYQPEAYVAARDLFIEKDSSINEHIEQM 136

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+SLLER D I+V +VSCIYGIG+   Y  M++ L+ GD + ++ELL  LV  QY+
Sbjct: 137 RLSATKSLLERRDTIIVGTVSCIYGIGNPGDYHAMVLTLRSGDRIARQELLGRLVAMQYE 196

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG FR  G+ I++FP+   ++A R+++F ++IE +  F PLTG+  + V    
Sbjct: 197 RNDVEFTRGAFRARGEIIDVFPAEHAELALRITLFDDEIETLEMFDPLTGKIKQKVPRFT 256

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A++ IKEEL+ R   L  +G+L+EAQRLEQR  +DLEML+  G 
Sbjct: 257 VFPSSHYVTPRETVLRAIETIKEELRERSAVLVADGKLVEAQRLEQRTRFDLEMLQELGF 316

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHVT+ Q+S MYRGD  RK+TL 
Sbjct: 317 CKGIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTMGQLSAMYRGDRSRKSTLV 376

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS MDNRPL+ EE+       + VSATP ++E E     +VEQ++RPTGLVDP 
Sbjct: 377 QFGFRLPSAMDNRPLQLEEFEQRMRQCVFVSATPANYEKEHSDN-VVEQVVRPTGLVDPV 435

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R A TQV+D+  EI L      R+L+T LTKRM+EDLT+YL E  ++VRY+HS++ T
Sbjct: 436 VEVRPALTQVDDLVGEIKLRIAVQERVLVTTLTKRMSEDLTDYLTENGLKVRYLHSDIDT 495

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRA
Sbjct: 496 VERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRA 555

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N K ILYAD IT S+  A+ ET RRR KQL+ NK+H I  + V + + E+ID +++
Sbjct: 556 ARNLNGKAILYADRITDSMYRAMGETERRRHKQLDFNKEHGITARGVSKAVREMIDGVMV 615

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           + A  +   + +  +    K     ++ L K M   A NL FE+AA  RD + RLK    
Sbjct: 616 DPAQASAADLISPDVLRDDKSLAKEIRRLEKLMMDHAKNLEFEQAAAARDALNRLKQKAL 675

Query: 799 F 799
            
Sbjct: 676 L 676


>gi|291166446|gb|EFE28492.1| excinuclease ABC subunit B [Filifactor alocis ATCC 35896]
          Length = 656

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/660 (53%), Positives = 472/660 (71%), Gaps = 6/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + T Y P+GDQP AI  ++  I  + K Q LLGVTGSGKTFTMA +I+  Q+P +
Sbjct: 1   MPKFNLTTSYQPTGDQPKAIDDMVNSIQQKNKFQTLLGVTGSGKTFTMANIIQQTQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID+
Sbjct: 61  VIAHNKTLAAQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +++ER D I+V+SVSCIYG+G  + Y  M+V L+     ++ E++  LV+ QY
Sbjct: 121 LRHSATAAVIERRDVIIVASVSCIYGLGDPDDYRYMMVSLRPQMIKDRDEVIKQLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI  IRGTFRV GD +EI P++ +    RV  FG++IE I E   LTG+ I  +   
Sbjct: 181 ERNDINFIRGTFRVRGDILEIMPANTDIKGLRVEFFGDEIERIVEIDHLTGEIIGELRQA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYVT +  L  A+  I +EL+ RL    +   LLEAQRLEQR  YD+EML   G
Sbjct: 241 SIFPASHYVTTKEKLEQAIVGIGKELQERLQYFRENNFLLEAQRLEQRTMYDIEMLREIG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           +C+ IENYSR+LTGR  GE   TL ++  +D L+ VDESH TIPQ++ MY GD  RK +L
Sbjct: 301 TCKGIENYSRHLTGRKAGERAFTLMDFFDDDYLIIVDESHATIPQLNAMYSGDRARKESL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL+FEE+  +    + VSATPG +E+E       EQIIRPTGL+DP
Sbjct: 361 IDYGFRLPSAADNRPLKFEEFEGMINQILFVSATPGKYEMEHS-SCFGEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    Q++D+  EI    Q+  R+L+T LTK+MAE LT+YL +  I V Y+HS+V+
Sbjct: 420 VIEVRPIDGQIDDLLHEIQNTVQKNERVLVTTLTKKMAESLTDYLKQAGILVEYLHSDVE 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERI +IR+LRLG+F VLVGINLLREGLDIPE  LVAILDADKEGFLRS+TS+IQTIGR
Sbjct: 480 TLERIRLIRNLRLGEFHVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSMIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN + +VI+YADTITKS++ AIDET+RRRE Q  +N++H I P+++ +++ + I  ++
Sbjct: 540 AARNADGRVIMYADTITKSMKSAIDETSRRREIQNRYNEEHGIVPKTINKEVRQEISMLV 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            E   T ++     +  +S+++    ++ L++QM  AA+NLNFE+AA  RD I +L+   
Sbjct: 600 AEKEETYSV-----KEVISRQELIEKIEVLKEQMLEAAENLNFEQAAIYRDSILQLEKKL 654


>gi|256842752|ref|ZP_05548240.1| excinuclease ABC, B subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256614172|gb|EEU19373.1| excinuclease ABC, B subunit [Lactobacillus crispatus 125-2-CHN]
          Length = 681

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/658 (50%), Positives = 465/658 (70%), Gaps = 3/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + +P +V+ 
Sbjct: 10  FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIAKLNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L+ERND +VV+SVSCIYG+G  + Y++ ++ +  G+  ++  LL  LV  QY R 
Sbjct: 130 ATTSALMERNDVVVVASVSCIYGLGDPKEYARSVLMIHEGEEYDRNTLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+   + A+R+  FG++I+ I E   LTG+ I   E+I ++
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPAGNSNHAYRIEFFGDEIDRIVEVDSLTGEVIGERESISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L  A+  I +E+K+++ + E EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNDEQLRRALGAISKEMKLQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERT-DHKVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVGEINKRIDRHERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+QT+GRAAR
Sbjct: 489 RMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738
           N N +VI+YADTIT S++ AI  T RRR+ Q+E NK+H I P+++ + I +VI       
Sbjct: 549 NANGEVIMYADTITDSMRAAIKATKRRRKIQMEFNKEHGITPKTIIKPIQDVISITKPSS 608

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           E    ++   D     L+ K+ K  + +L++QM  AA  L+FEEAA +RD I  L+ S
Sbjct: 609 EKEEKSDSFADLNFDELTAKQKKTMISNLQEQMQEAAKKLDFEEAANLRDAIMELQKS 666


>gi|228474442|ref|ZP_04059177.1| excinuclease ABC subunit B [Staphylococcus hominis SK119]
 gi|314936942|ref|ZP_07844289.1| excinuclease ABC subunit B [Staphylococcus hominis subsp. hominis
           C80]
 gi|228271801|gb|EEK13148.1| excinuclease ABC subunit B [Staphylococcus hominis SK119]
 gi|313655561|gb|EFS19306.1| excinuclease ABC subunit B [Staphylococcus hominis subsp. hominis
           C80]
          Length = 661

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/657 (52%), Positives = 471/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +++ P GDQP AI ++++G+ + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKLNSEFEPQGDQPQAIKKIVEGVKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 126 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYSR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++++ I E   LTG+ IR  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEVDRIREVNYLTGEVIREREHFAI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    +  A++ I++EL+ RL EL+ E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKMKVAIERIEKELEERLKELKAENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQI GM+ GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMFNGDQARKKVLVD 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS MDNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 366 HGFRLPSAMDNRPLKFEEFEQKTKQLVYVSATPGPYEIEHT-DKMVEQIIRPTGLLDPKI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R  + Q++D+  EI     +  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 DVRPTKNQIDDLLSEIQERIDRNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +D +VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDAVVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD IT S+Q AIDET RRRE Q+ HN+K+ I P+++ +KI +VI   +  
Sbjct: 545 RNDKGEVIMYADKITDSMQYAIDETQRRREIQMTHNEKYGITPKTINKKIHDVISATVDN 604

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D        +  +  ++KK+ +  ++++ K+M  AA +L+FE A  +RD +  LK+ 
Sbjct: 605 DETNEKQQTEVPK-KMTKKERQKTIENIEKEMKKAAKDLDFERATELRDMLFELKAE 660


>gi|19552585|ref|NP_600587.1| excinuclease ABC subunit B [Corynebacterium glutamicum ATCC 13032]
 gi|62390254|ref|YP_225656.1| excinuclease ABC subunit B [Corynebacterium glutamicum ATCC 13032]
 gi|41325591|emb|CAF21380.1| EXCINUCLEASE ABC SUBUNIT B [Corynebacterium glutamicum ATCC 13032]
          Length = 720

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/698 (50%), Positives = 478/698 (68%), Gaps = 11/698 (1%)

Query: 116 LLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
                 + +      +    +    F + +++ P+GDQPAAI +L + +   E+  +L+G
Sbjct: 24  FAAEHPVLSHSEHRPVGEIERSDDKFVVVSEFEPAGDQPAAIKELDERLDRGERDVVLMG 83

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GK+ T A +IE  QRPA+VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPE
Sbjct: 84  ATGTGKSATAAWLIEKQQRPALVMAPNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPE 143

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AY+ +TDTYIEK+SSINE ++R+RHSAT SLL R D +VVSSVSCIYG+G+ +SY    V
Sbjct: 144 AYIAQTDTYIEKDSSINEDVERLRHSATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSV 203

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L +G+ +++   L  LV  QY+R D+G  RG FRV GD+++I P++ E++A R+  FG+
Sbjct: 204 VLNVGEEIDRDRFLRLLVDIQYERNDVGFTRGAFRVKGDTVDIIPAY-EELAVRIEFFGD 262

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ +   +PLTG  IR V  I+I+  +HYV     +  A+  IK EL++RL +LE  G+
Sbjct: 263 EIDALYYIHPLTGDTIRQVNEIRIFPATHYVAGPERMEKAVADIKAELEVRLADLENRGK 322

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRL  R  YDLEM+E  G C  IENYSR++ GR  G  P TL +Y PED L  +DE
Sbjct: 323 LLEAQRLRMRTEYDLEMIEQVGFCSGIENYSRHIDGRGEGTAPATLIDYFPEDFLTIIDE 382

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVT+PQI GM+ GD  RK  L E+GFRLPS MDNRPL +EE++  R  T+ +SATPG +
Sbjct: 383 SHVTVPQIGGMFEGDMSRKRNLVEFGFRLPSAMDNRPLTWEEFDERRGQTVFMSATPGKF 442

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           E+    G  VEQ+IRPTGLVDP V ++  + Q++D+  EI     +  R+L+T LTK+MA
Sbjct: 443 EIAAADGEFVEQVIRPTGLVDPKVTVKPTKGQIDDLIHEIRQRTDKDERVLVTTLTKKMA 502

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL E  IRVRY+HS++ TL+R+E++R LRLG++DVLVGINLLREGLD+PE  LVA
Sbjct: 503 EDLTDYLLENGIRVRYLHSDIDTLQRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVA 562

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS TSLIQTIGRAARNV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +N
Sbjct: 563 ILDADKEGFLRSTTSLIQTIGRAARNVSGEVIMYADKITDSMQYAIEETDRRREKQVAYN 622

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAA--------TTNISIDAQQLSLSKKKGKAHLKSL 767
           K+H I+PQ +++KI +++D +    A            +       S+  K+ +  +  L
Sbjct: 623 KEHGIDPQPLRKKIADILDQVYDNSADGAGPSASGDAAVVAKPDVSSMPAKEVQKLIDDL 682

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             QM  AA  L FE A R+RDEI  LK     +G+ D+
Sbjct: 683 SAQMAAAARELKFELAGRLRDEIFELKKE--LRGIKDA 718


>gi|160878417|ref|YP_001557385.1| excinuclease ABC subunit B [Clostridium phytofermentans ISDg]
 gi|160427083|gb|ABX40646.1| excinuclease ABC, B subunit [Clostridium phytofermentans ISDg]
          Length = 662

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/660 (52%), Positives = 463/660 (70%), Gaps = 2/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +++ P+GDQP A+  L+KG     + + LLGVTGSGKTFTMA VI+ + RP +
Sbjct: 1   MDHFKLVSEFAPTGDQPEALEALVKGFEEGNQFETLLGVTGSGKTFTMANVIQRLNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID+
Sbjct: 61  IIAHNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+GS   Y  M + L+ G   ++ ++L  LV+ QY
Sbjct: 121 LRHSATAALTERRDVIIVASVSCIYGLGSPVDYQNMTLSLRPGMIRDRDDVLRRLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD +EIFP    D+A+RV  FG+++E I+E   LTG+    +E +
Sbjct: 181 TRNDMDFKRGTFRVRGDVVEIFPITGTDLAYRVEFFGDEVERITEIDVLTGEIKCTLEHM 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV  +  L  A+  I+EEL+ R+   + E +LLEAQR+ +R  +D+EML  TG
Sbjct: 241 VIFPASHYVVSKDNLERAIVNIEEELEDRIRYFKSEDKLLEAQRISERTHFDIEMLRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYS +L G  P   P TL +Y P+D L+ VDESH+TIPQ+ GMY GD  RK TL
Sbjct: 301 FCSGVENYSMHLAGLTPESTPHTLIDYFPDDFLIMVDESHITIPQVRGMYAGDQSRKTTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS   NRPL F E+       + VSATP  +E +  + +  EQIIRPTGL+DP
Sbjct: 361 VDFGFRLPSAKSNRPLNFTEFESKINQMLFVSATPNVYEKDH-ELLRAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++D+  E+N    +  ++++T LTKRMAEDLT+Y+ E  IR++Y+HS++ 
Sbjct: 420 VVEVRPVHGQIDDLVSEVNKETAKKNKVMITTLTKRMAEDLTDYMRELGIRIKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRD+R+  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERSEIIRDMRMDVFDVLVGINLLREGLDIPEISLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VI+YAD IT S+  A+ ET RRR+ Q E+N+KH I PQ++K+K+ E+I    
Sbjct: 540 AARNAEGRVIMYADRITDSMDKALRETERRRKIQDEYNEKHGITPQTIKKKVRELISISK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                  +++I     S+S+K+ +A  K L K+MH AA  LNFE AA +RD++  LK   
Sbjct: 600 KVSKEMYDMNIK-DYESMSRKELEAVAKKLTKEMHTAAAELNFELAAELRDKLLELKKQI 658


>gi|71281240|ref|YP_269592.1| excinuclease ABC subunit B [Colwellia psychrerythraea 34H]
 gi|90110881|sp|Q480C7|UVRB_COLP3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|71146980|gb|AAZ27453.1| excinuclease ABC, B subunit [Colwellia psychrerythraea 34H]
          Length = 673

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/667 (54%), Positives = 473/667 (70%), Gaps = 10/667 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +    + ++Y PSGDQP AI QLL+GI S    Q LLGVTGSGKT+T+A VIE + RP +
Sbjct: 1   MKKLTICSEYTPSGDQPTAIKQLLEGIESGLAHQTLLGVTGSGKTYTIANVIEKLNRPTM 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+NE I++
Sbjct: 61  MLAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNEHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+++SVS IYG+G  +SY +M++ +  GD + Q+++L  L + QY
Sbjct: 121 MRLSATKALLERRDVIIIASVSAIYGLGDPDSYLKMMLHISRGDIINQRDILRRLAELQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R T+RV GD I+IFP+  + +A RV +F  +IE IS+F PLTGQ  R ++ +
Sbjct: 181 TRNDVAFARATYRVRGDVIDIFPAESDRLALRVELFDEEIERISQFDPLTGQVERTLDRV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  +HY TP+  +  A+  IK ELK R  +L+   +L+E QRL QR  +D+EM+   G
Sbjct: 241 TVYPKTHYATPKEKIIAAVDKIKIELKHRSQQLKDNNKLVEEQRLTQRTQFDIEMMTELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G  PPTLF+Y+P+D LL +DESHVT+PQI  MY+GD  RK  L
Sbjct: 301 YCSGIENYSRYLSGREEGGAPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKENL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP++FEE+  + P TI VSATP  +ELE+C   I EQ++RPTGL+DP
Sbjct: 361 VEYGFRLPSALDNRPMKFEEFEAISPQTIYVSATPSKFELEKCGSDIAEQVVRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R   TQV+D+  EIN       R+L T LTKRMAEDLT+YLY+  I+ RY+HS+V 
Sbjct: 421 EIEVRPVETQVDDLLSEINKRLPLDERVLATTLTKRMAEDLTDYLYDHGIKARYLHSDVD 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRD RLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 481 TVERVEIIRDFRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N + ILY D IT S++ AIDET RRR KQ ++N  +NI PQ V  +I +V+    
Sbjct: 541 AARNLNGRAILYGDRITGSMRRAIDETERRRVKQHQYNLDNNITPQGVVRRITDVMGVGS 600

Query: 738 LEDAATTNISID----------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
             DA + +   +          A++  L+  +    +  L K M   A NL FE+AA +R
Sbjct: 601 YSDAKSLDKVAEANTNYHINQQAEEPLLTTSQIDTKIVELEKLMQGHAQNLEFEQAAAMR 660

Query: 788 DEIKRLK 794
           D+I +L+
Sbjct: 661 DKIAKLR 667


>gi|220912566|ref|YP_002487875.1| excinuclease ABC subunit B [Arthrobacter chlorophenolicus A6]
 gi|254764900|sp|B8H7K6|UVRB_ARTCA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|219859444|gb|ACL39786.1| excinuclease ABC, B subunit [Arthrobacter chlorophenolicus A6]
          Length = 704

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/693 (49%), Positives = 471/693 (67%), Gaps = 29/693 (4%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
            + ++ +  F++ +++ P+GDQPAAIA L + I++ EK  +LLG TG+GK+ T A +IE 
Sbjct: 5   QDINRVVAPFEVISEFKPAGDQPAAIADLTERINNGEKDVVLLGATGTGKSATTAWLIEQ 64

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +QRP +VM  NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYV +TDT+IEK+SSI
Sbjct: 65  VQRPTLVMVQNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVAQTDTFIEKDSSI 124

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           NE+++R+RHSAT +LL R D +VV++VSCIYG+G+ E Y   +V L+ G  + + +LL  
Sbjct: 125 NEEVERLRHSATNALLTRRDVVVVATVSCIYGLGTPEEYIAGMVTLRKGAEMNRDDLLRK 184

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
            V  QY R D+   RGTFRV GD++EI P + E++A R+  FG++IE I   +PLTGQ I
Sbjct: 185 FVSMQYARNDMDFHRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIENIQTLHPLTGQII 243

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
           ++ E + ++  SHYV     ++ A+K I++EL  RL  LE + +L+EAQRL  R TYDLE
Sbjct: 244 QDEEEMYVFPASHYVAGPERMSRAIKRIEDELAERLQVLESQNKLVEAQRLRMRTTYDLE 303

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M++  G C  IENYS ++ GR  G  P  L +Y P+D LL +DESHVT+PQI  MY GD 
Sbjct: 304 MMQQMGFCNGIENYSSHIDGRARGTAPHCLLDYFPDDFLLVIDESHVTVPQIGAMYEGDM 363

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK  L ++GFRLPS MDNRPL+++E+      T+ +SATPG +EL +  G  V+QIIRP
Sbjct: 364 SRKRNLVDFGFRLPSAMDNRPLKWDEFLERVGQTVYLSATPGKYELGKADG-FVQQIIRP 422

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP V ++  + Q++D+  EI    ++  R+L+T LTKRMAEDLT+YL    ++V Y
Sbjct: 423 TGLIDPEVVVKPTKGQIDDLLGEIRTRTERNERVLVTTLTKRMAEDLTDYLLGHGVKVEY 482

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS+V TL R+E++R+LR+G FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS TSL
Sbjct: 483 LHSDVDTLRRVELLRELRMGTFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSL 542

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARNV+ +V +YAD IT S+  AIDET RRR  Q+ +N +H I+PQ +++KI +
Sbjct: 543 IQTIGRAARNVSGQVHMYADRITDSMAQAIDETNRRRAIQVAYNTEHGIDPQPLRKKIAD 602

Query: 732 VIDPILLEDAATTNI-----------------SIDAQQ----------LSLSKKKGKAHL 764
           + D +  EDA T  +                    A++           +   +     +
Sbjct: 603 ITDQLAKEDADTDALLGSFDYGKGKRGITGANKPGAKKAAAQVRADGLAAAPAEDLVGMI 662

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             L +QMH AA  L FE AARIRDE+  LK   
Sbjct: 663 AQLTEQMHGAAAELQFEVAARIRDEVSELKKEL 695


>gi|15841088|ref|NP_336125.1| excinuclease ABC subunit B [Mycobacterium tuberculosis CDC1551]
 gi|253799329|ref|YP_003032330.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis KZN
           1435]
 gi|13881302|gb|AAK45939.1| excinuclease ABC, subunit B [Mycobacterium tuberculosis CDC1551]
 gi|253320832|gb|ACT25435.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis KZN
           1435]
          Length = 739

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/739 (49%), Positives = 492/739 (66%), Gaps = 37/739 (5%)

Query: 95  SEQTMTPSVQAL-ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQ 153
           S   ++     L      +++P++ + +        ++    +    F++ + + P+GDQ
Sbjct: 7   SPHGVSAGGSRLVGVAFATEHPVVAHSEY------RAVEEIVRAGGHFEVVSPHAPAGDQ 60

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
           PAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMAPNK LAAQL +E 
Sbjct: 61  PAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMAPNKTLAAQLANEL 120

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RHSAT +LL R D +
Sbjct: 121 REMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRHSATSALLSRRDVV 180

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R D+   RG+FRV G
Sbjct: 181 VVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRNDMSFTRGSFRVRG 240

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+  +HYV     + 
Sbjct: 241 DTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIFPATHYVAGPERMA 299

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C  IENYSR++ GR 
Sbjct: 300 HAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCSGIENYSRHIDGRG 359

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
           PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EYGFRLPS  DNRPL
Sbjct: 360 PGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEYGFRLPSACDNRPL 419

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
            +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V ++  + Q++D+  
Sbjct: 420 TWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVVVKPTKGQIDDLIG 479

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL R+E++R LRLG +
Sbjct: 480 EIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLRRVELLRQLRLGDY 539

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAARNV+ +V +YAD I
Sbjct: 540 DVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAARNVSGEVHMYADKI 599

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA--- 750
           T S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D +  E   T  + +     
Sbjct: 600 TDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREADDTAVVEVGGSGR 659

Query: 751 ------------------------QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
                                      ++ + +    +K L  QM  AA +L FE AAR 
Sbjct: 660 NASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMAAARDLQFELAARF 719

Query: 787 RDEIKRLKSSPYFQGLDDS 805
           RDEI  LK     +G+D +
Sbjct: 720 RDEIADLKRE--LRGMDAA 736


>gi|168334395|ref|ZP_02692574.1| excinuclease ABC, B subunit [Epulopiscium sp. 'N.t. morphotype B']
          Length = 659

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/658 (53%), Positives = 464/658 (70%), Gaps = 4/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +D+   GDQ AAI+ L + I S  + Q LLGVTGSGKTFTMA +IE  Q+P +
Sbjct: 1   MKKFRLHSDFAAMGDQTAAISVLSESIESGNRYQTLLGVTGSGKTFTMANIIEQTQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV ++DT+IEK+SS+NE+ID+
Sbjct: 61  IIAHNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVAQSDTFIEKDSSVNEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT SL ER D I+V+SVSCIYG+G    Y   ++ ++ G   ++ +LL  LV  QY
Sbjct: 121 LRHSATASLAERRDVIIVASVSCIYGLGDPLDYEDQVLSIRTGMDFDRDDLLRKLVHIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D    RGTFRV GD +E+ P+ + + A RV  FG++IE+ISE   LTG+ +     +
Sbjct: 181 TRNDDDFSRGTFRVRGDVVEVIPAGMSESAIRVEFFGDEIEKISEIDSLTGKVLGIRNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHY      L+ A+K I+ EL  +L+EL+K+ +LLE QRL QR  +D+EML   G
Sbjct: 241 SIFPGSHYTVSPDKLSAAIKRIESELNTQLLELKKQDKLLEMQRLTQRTNFDIEMLREMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYS +L+GR+ G  P TL +Y P+D L+ VDESH+T+PQI GM  GD  RK+TL
Sbjct: 301 YCSGIENYSLHLSGRDYGSTPFTLLDYFPDDYLIIVDESHITLPQIRGMSNGDRARKSTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL F+E+       + VSATP  +ELE  + I  EQ+IRPTGL+DP
Sbjct: 361 VDYGFRLPSAIDNRPLNFDEFEQKINQILYVSATPSQYELEHSEAIG-EQLIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EI+    Q++D+  +I+       ++L+T LTKRM+EDLT YL E  I+V+Y+HS+++
Sbjct: 420 AIEIKXXTGQIDDLLTQIHSTVAAAGKVLVTTLTKRMSEDLTAYLQEVGIKVKYLHSDIE 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI+RDLR+G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS TSLIQTIGR
Sbjct: 480 TLERIEIVRDLRMGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSATSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VI+YADTIT+S+++AIDET RRR+ Q E+N+ H I PQ++K+ + E+I    
Sbjct: 540 AARNSQGRVIMYADTITRSMKIAIDETNRRRKIQQEYNEAHGITPQTIKKAVRELIAATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            E  ATT   I+    S+S  + +  +    K M  AA  L FE+AA +RD +  LK 
Sbjct: 600 SEKTATT---INKSPESMSAVELERAITKTEKSMKKAAQELEFEKAATLRDALIELKK 654


>gi|317490182|ref|ZP_07948670.1| excinuclease ABC [Eggerthella sp. 1_3_56FAA]
 gi|316910676|gb|EFV32297.1| excinuclease ABC [Eggerthella sp. 1_3_56FAA]
          Length = 716

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/666 (53%), Positives = 489/666 (73%), Gaps = 2/666 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F++ + Y P+GDQP AI +L  G+    + Q LLGVTGSGKTFTMAKVIEA+Q+P +V
Sbjct: 24  TPFKVVSPYEPAGDQPQAIEKLATGVKEGLRYQNLLGVTGSGKTFTMAKVIEAVQKPTLV 83

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQL SE K FFP NAV YFVSYYDYYQPEAYVP +DT+IEK++SINE+++++
Sbjct: 84  MAPNKTLAAQLASELKEFFPDNAVVYFVSYYDYYQPEAYVPSSDTFIEKDASINEEVEKL 143

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R DCIVV+SVSCIYGIGS   Y+ M V +     +++ +++  L+  QY 
Sbjct: 144 RHAATSALLSRRDCIVVASVSCIYGIGSPMDYAGMAVFVDKQKDMDRDQVIHELIDIQYD 203

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD++++FP +  D   R+  +G++IE I+E   +TG+ +   E + 
Sbjct: 204 RNDYEQKRGTFRVRGDALDVFPPYA-DHPIRIEFWGDEIESITEIDNVTGEVLSEFEALP 262

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SHYVT RP ++ A+  I++EL+ RL + ++EG+LLEAQRLE R+ YDLEMLET   
Sbjct: 263 IWPASHYVTARPKMDRALGTIRDELRERLQQFKEEGKLLEAQRLEMRVNYDLEMLETMNF 322

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR++ GR PGEPP TL +Y P+D    +DESHVT+PQI GM+ GD  RK TLA
Sbjct: 323 CSGIENYSRHMDGREPGEPPYTLIDYFPKDFFCIIDESHVTVPQIRGMHEGDRSRKITLA 382

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPSC+DNRPLRF+E+    P  + VSATPG +E +  Q   VEQIIRPTGL+DP 
Sbjct: 383 EHGFRLPSCLDNRPLRFDEFEDRIPQFVYVSATPGDYEQKVSQQQ-VEQIIRPTGLLDPE 441

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R + +Q++D+ DE    A +  R+L+T LTK+MAEDLT++L ++ ++ RYMHS++ T
Sbjct: 442 IIVRGSASQIDDIIDESKERAARDERVLITTLTKKMAEDLTDHLLDQGVKARYMHSDIAT 501

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER+EI+RDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR+  SLIQTIGRA
Sbjct: 502 LERVEILRDLRRGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNHRSLIQTIGRA 561

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV+ +VI+YAD +T S+ LAIDET RRR  Q+++N++H I PQ++++ I +++  +  
Sbjct: 562 ARNVSGQVIMYADKMTDSMALAIDETKRRRAIQMKYNEEHGIEPQTIRKAINDIMSYVTD 621

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           E   TT   ++ +   LS+++    ++S+   M  A+ +++FEEAAR+RD++ +L+    
Sbjct: 622 EMGGTTAEQVNKELAELSREEVLRIIQSMEDDMASASQSMDFEEAARLRDQVVKLRVQVE 681

Query: 799 FQGLDD 804
               DD
Sbjct: 682 GGSEDD 687


>gi|229820672|ref|YP_002882198.1| excinuclease ABC, B subunit [Beutenbergia cavernae DSM 12333]
 gi|259710322|sp|C5BV49|UVRB_BEUC1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|229566585|gb|ACQ80436.1| excinuclease ABC, B subunit [Beutenbergia cavernae DSM 12333]
          Length = 698

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/691 (51%), Positives = 482/691 (69%), Gaps = 24/691 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + +  + +  F++ +D+ PSGDQP AIAQL   + + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVTDLQRRVFPFEVISDFTPSGDQPDAIAQLTARLQAGEKDIVLLGATGTGKSATTAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP +DTYIEK+
Sbjct: 62  IEQVQRPTLVMAPNKTLAAQLATEFRELLPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN++++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V+L++G  +E+ +L
Sbjct: 122 SSINDEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVRLRVGMQIERDDL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD++EI P + E++A R+  FG+++E I   +PLTG
Sbjct: 182 LRQFVGMQYTRNDLSFQRGTFRVRGDTVEIIPVY-EELALRIEFFGDEVEAIHTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             +R  E + ++  +HYV     +  A+  I+ EL+ RL ELE  GRLLEAQRL  R TY
Sbjct: 241 DVVRAEEEMYLFPATHYVAGPERMERAIAGIEVELEDRLAELEGGGRLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G+C  IENYSR++ GR PG PP TL +Y PED +L +DESH T+PQI  MY 
Sbjct: 301 DIEMMRQIGTCSGIENYSRHIDGREPGSPPHTLLDYFPEDFMLVIDESHQTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS MDNRPLR+EE+      T+ +SATPG +EL Q  G +VEQ+
Sbjct: 361 GDSSRKRTLVEHGFRLPSAMDNRPLRWEEFLERIGQTVYLSATPGPYELGQSDG-VVEQV 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++  + Q++D+  EIN  A++  R+L+T LTK+M+EDLT+YL ER +R
Sbjct: 420 IRPTGLVDPEIVVKPTKGQIDDLLAEINARAERDERVLVTTLTKKMSEDLTDYLLERGVR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSEV TL R+E++R+LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSEVDTLRRVELLRELRTGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD++T S+ LAI+ET RRREKQ+ +N +  I+P+ ++++
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADSVTPSMALAIEETNRRREKQVAYNTERGIDPEPLRKR 599

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSK----------------------KKGKAHLKS 766
           I ++ + +  ED  T  +     + + SK                            ++ 
Sbjct: 600 IGDITELLAREDIDTKELLAGGYRQAGSKAPVPRKAGGDGSMRERLAGAATADLAELIQE 659

Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           L  QMH+AA  L FE AAR+RDEI  LK   
Sbjct: 660 LTDQMHVAAGELQFEVAARLRDEISDLKKEL 690


>gi|114565819|ref|YP_752973.1| excinuclease ABC subunit B [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114336754|gb|ABI67602.1| Excinuclease ABC subunit B [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 665

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/658 (55%), Positives = 477/658 (72%), Gaps = 4/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y  +GDQP AI QLL G+ +  + Q LLGVTGSGKTFTMA++IE +QRPA+
Sbjct: 1   MPEFKLHSSYKATGDQPQAIKQLLDGVAAGFRDQTLLGVTGSGKTFTMARIIEELQRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           VMAPNK LA QLYSEFK FFP NAVEYF+SYYDYYQPEAYVP+TDTYIEK+SSIN++ID+
Sbjct: 61  VMAPNKTLAGQLYSEFKQFFPDNAVEYFISYYDYYQPEAYVPQTDTYIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT  +LER D I+V+SVSCIYG+G+ E Y  + V L+ G  + + +LL  LV   Y
Sbjct: 121 LRHSATAGVLERRDVIIVASVSCIYGLGAPEDYYSLAVSLRPGMEIARDDLLRRLVDNHY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D    RG FR  GD +EIFP+   + A RV  FG++I+ I EF PL+G+ I      
Sbjct: 181 ERNDFSFFRGNFRARGDVVEIFPASSNENALRVEFFGDEIDRIIEFNPLSGEIIGRRLHS 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+VT R  +  A   I+EEL  +L   + EG+LLEAQRLEQR  YDLEM+   G
Sbjct: 241 MIFPASHFVTTRERMLEAAGQIEEELAQQLARFKMEGKLLEAQRLEQRTRYDLEMIREIG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSRY+TGR PGEPP TL ++ P+D LLF+DESH+ +PQI GMY GD  RK  L
Sbjct: 301 YCKGIENYSRYITGRAPGEPPYTLLDFFPDDFLLFIDESHIGVPQIRGMYEGDRSRKQNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS +DNRPL+F E+       I VSATP  +EL+     + EQIIRPTGL+DP
Sbjct: 361 VDFGFRLPSALDNRPLKFAEFQEKINQVIYVSATPADYELQHS-VQVSEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+RS++ Q++D+  E     ++G R+L+T LTKRMAEDLT+YL +  ++VRYMHS++ 
Sbjct: 420 EVEVRSSQNQIDDLMAEARAVVEKGYRVLITTLTKRMAEDLTDYLADTGLKVRYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            L+R+EI+R+LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SL+QTIGR
Sbjct: 480 ALQRLEILRELRSGVFDVLVGINLLREGLDLPEVALVAILDADKEGFLRSTRSLVQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  KVI+YAD IT S++ AIDET RRR KQLE+N++H+I P+S+++ I   ++  +
Sbjct: 540 AARNVEGKVIMYADEITLSMKSAIDETNRRRLKQLEYNREHHITPESIRKAIYAPVEATI 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            E+A   +I        +++++ +  L+ +   M+ AA+ L FE+AAR+RD I+ L+ 
Sbjct: 600 AEEAVEYDIR---DFQKMAREEREKLLREMEADMYRAAETLEFEKAARLRDSIRELQQ 654


>gi|262202763|ref|YP_003273971.1| excinuclease ABC subunit B [Gordonia bronchialis DSM 43247]
 gi|262086110|gb|ACY22078.1| excinuclease ABC, B subunit [Gordonia bronchialis DSM 43247]
          Length = 718

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/705 (50%), Positives = 476/705 (67%), Gaps = 29/705 (4%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
               +    +    F++ ++Y P+GDQP AI  L + I   EK  +LLG TG+GK+ T A
Sbjct: 14  EFRPVGEIVRTGGKFEVVSEYEPAGDQPEAIDDLERRIRGGEKDIVLLGATGTGKSATTA 73

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            +IE +QRP +VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIE
Sbjct: 74  WLIERVQRPTLVMAPNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPEAYIAQTDTYIE 133

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+SSIN+ ++R+RHSAT SLL R D +VV+SVSCIYG+G+ +SY    V++++G ++++ 
Sbjct: 134 KDSSINDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVEVEVGANIDRD 193

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
            LL  LV  QY R D    RG FRV GD++EI PS+ E++A R+  FG+++E +   +PL
Sbjct: 194 ALLRLLVDVQYTRNDQSFTRGGFRVRGDTVEIIPSY-EELAVRIEFFGDEVEALYYLHPL 252

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG  +R V++++I+  +HYV     +  AM  I+ EL+ RL +LE +G+LLEAQRL  R 
Sbjct: 253 TGDVVRQVDSLRIFPATHYVAGPERMERAMTSIEAELEERLADLEGKGKLLEAQRLRMRT 312

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
           TYDLEM+   G C  IENYSR++ GR  G  P TL +Y P+D LL +DESHVT+PQI GM
Sbjct: 313 TYDLEMMRQVGFCSGIENYSRHIDGRAAGSAPATLIDYFPDDFLLVIDESHVTVPQIGGM 372

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           Y GD  RK  L EYGFRLPS +DNRPL ++E+      T+ +SATPG +EL Q  G  VE
Sbjct: 373 YEGDMSRKRNLVEYGFRLPSAVDNRPLTWDEFVDRIGQTVYLSATPGPYELGQANGEFVE 432

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q+IRPTGLVDP V ++  + Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  
Sbjct: 433 QVIRPTGLVDPQVVVKPTKGQIDDLVHEIRERTERDERVLVTTLTKKMAEDLTDYLLELG 492

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           IRVRY+HSEV TL R+E++R LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLR
Sbjct: 493 IRVRYLHSEVDTLRRVELLRQLRSGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLR 552

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S TSLIQTIGRAARNV+ +V +YADTIT S++ AI+ET RRREKQ+ +N +H I+P+ ++
Sbjct: 553 STTSLIQTIGRAARNVSGEVHMYADTITDSMRNAIEETERRREKQVAYNTEHGIDPKPLR 612

Query: 727 EKIMEVIDPILLE--------------------------DAATTNISIDAQQLSLSKKKG 760
           +KI +++D +  E                           A +  +       S+ + + 
Sbjct: 613 KKIADILDQVYREADDDTVKVGGSGRNASRGRRAQGEVSKAGSAGVIEKRDVSSMPRAEL 672

Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
              +  L  QM  AA +L FE A R+RDEI  LK     +G+D +
Sbjct: 673 ADLVAQLTDQMMNAARDLQFELAGRLRDEIADLKKE--LRGMDAA 715


>gi|164686652|ref|ZP_02210680.1| hypothetical protein CLOBAR_00247 [Clostridium bartlettii DSM
           16795]
 gi|164604042|gb|EDQ97507.1| hypothetical protein CLOBAR_00247 [Clostridium bartlettii DSM
           16795]
          Length = 670

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/668 (52%), Positives = 478/668 (71%), Gaps = 5/668 (0%)

Query: 130 SINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI 189
           ++     D+  F++++D+ P+GDQP AI +++  I+  EK   LLGVTGSGKTFTMA +I
Sbjct: 6   NVRERLGDVMDFKIKSDFKPTGDQPEAIREIVNAINHDEKFSTLLGVTGSGKTFTMANII 65

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
           + +++P +++A NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV  +DTYIEK++
Sbjct: 66  QEVKKPTLILAHNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPEAYVAHSDTYIEKDA 125

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELL 309
           SIN++ID++RHSAT S+LER D I+VSSVSCIYGIG  + Y  +++ L+ G  V++ +++
Sbjct: 126 SINDEIDKLRHSATASILEREDTIIVSSVSCIYGIGDPKDYKDLMLSLREGMQVDRDDVI 185

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369
             L++ QY+R DI  +RGTFRV GD +EIFP   ++ A RV  FG++I+ I+E   +TG+
Sbjct: 186 KKLIEIQYERNDINFVRGTFRVRGDVVEIFPVSNDERAIRVEFFGDEIDRITEIDYVTGK 245

Query: 370 KIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD 429
            +   +   I+  SHYVT    +  A+  I++EL   + E +   +LLEAQR+EQR  YD
Sbjct: 246 IVGTRKYTAIFPASHYVTTPERIEQAIDAIEKELAQVIQEFKDNDQLLEAQRIEQRTKYD 305

Query: 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG 489
           +EML   G CQ IENYSR++TGR PGE P TL  + P+D LL +DESHVTIPQ+ GMY G
Sbjct: 306 IEMLREVGFCQGIENYSRHITGRKPGEKPYTLMNFFPDDFLLIIDESHVTIPQVRGMYAG 365

Query: 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
           D  RK +L + GFRLPS  DNRPL FEE+       + VSATPG +E+E     + +QII
Sbjct: 366 DRSRKKSLIDNGFRLPSAYDNRPLNFEEFEENINQVLFVSATPGPYEIEHS-TTVAQQII 424

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           RPTGL+DP +E+R    Q++D+  EIN   ++  R+L+T LTK+M+EDLT YL E  I+V
Sbjct: 425 RPTGLLDPIIEVRPIVNQIDDLVGEINKVVERNERVLVTTLTKKMSEDLTNYLKEVGIKV 484

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           +Y+HS++ TLER EIIRDLRLGKFDVLVGINLLREGLDIPE  L+AILDADKEGFLRS+T
Sbjct: 485 KYLHSDIVTLERTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSET 544

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           SLIQT+GRAARN   +VI+YAD IT+S+   I+ET RRR+ Q ++N++H I P+++K+ I
Sbjct: 545 SLIQTVGRAARNAEGRVIMYADKITRSMAATIEETARRRQIQSQYNEEHGIIPRTIKKDI 604

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            + I+ + L +        +      +K + K +++ L+ +M  AA NL FE AA++RD+
Sbjct: 605 RDNIETLKLAEEEEIYGISETD----NKDEIKENIEKLQAEMMEAATNLQFERAAQLRDK 660

Query: 790 IKRLKSSP 797
           IK L+   
Sbjct: 661 IKELEEKL 668


>gi|113476281|ref|YP_722342.1| excinuclease ABC subunit B [Trichodesmium erythraeum IMS101]
 gi|110167329|gb|ABG51869.1| Excinuclease ABC subunit B [Trichodesmium erythraeum IMS101]
          Length = 677

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/666 (52%), Positives = 462/666 (69%), Gaps = 4/666 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +Q  + P+GDQP AIAQL   I +    Q LLG TG+GKTF++A VIE + RP +
Sbjct: 12  MKKFCLQAPFQPTGDQPQAIAQLTTNIQAGHNFQTLLGATGTGKTFSIASVIENVGRPTL 71

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E ++FFP N+VEYF+SYYDYYQPEAY+P TDTYIEK +SIN++ID 
Sbjct: 72  VLAHNKTLAAQLCNELRDFFPDNSVEYFISYYDYYQPEAYIPVTDTYIEKTASINDEIDM 131

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  + L++G+ + Q+++L  L   QY
Sbjct: 132 LRHSATRSLFERRDVIVVASISCIYGLGIPSEYLKAAISLQVGEEINQRQILRDLATVQY 191

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG  ++++E++
Sbjct: 192 TRNDLNLGRGKFRVKGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGNILQSLESL 250

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+VTP   L  A   I+ EL  RL ELEK G+LLEAQRLEQR  YD+EML   G
Sbjct: 251 NVYPARHFVTPEERLEIACNDIEVELDERLKELEKAGKLLEAQRLEQRSRYDIEMLREVG 310

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  GEPP  L +Y P+D LL +DESHVT+PQI GMY GD  RK  L
Sbjct: 311 YCNGVENYSRHLVGRKAGEPPECLIDYFPKDWLLVIDESHVTVPQIRGMYNGDQARKKVL 370

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+ EE+       I+VSATPG+WE+E+ +  IVEQIIRPTG+VDP
Sbjct: 371 VEHGFRLPSATDNRPLKSEEFWEKVNQCILVSATPGNWEIEKSEDRIVEQIIRPTGVVDP 430

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    Q++D+  EI    +   R+L+T LTKRMAEDLTEYL +++++VRY+HSE+ 
Sbjct: 431 KIFVRPTEGQIDDLLGEIRERVKLEERVLITTLTKRMAEDLTEYLEDQSVKVRYLHSEIN 490

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           +++RIEI++ LR G+FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 491 SIKRIEILQGLREGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 550

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR++  + ILYAD +T S+  AIDET RRR  QL +NK +NI P+ V +K    I   L
Sbjct: 551 AARHIRGQAILYADNLTDSMIKAIDETERRRGIQLAYNKMNNITPRPVVKKQSNAILAFL 610

Query: 738 LEDAATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  +  ++    Q  +LS       +K L  QM  AA NL FEEAA++RD IK L+
Sbjct: 611 DVSRRLNSQQLEEVYEQVDNLSLDDVPEWIKKLESQMKEAAKNLEFEEAAKLRDRIKHLR 670

Query: 795 SSPYFQ 800
                 
Sbjct: 671 DKLVGN 676


>gi|268315625|ref|YP_003289344.1| excinuclease ABC, B subunit [Rhodothermus marinus DSM 4252]
 gi|262333159|gb|ACY46956.1| excinuclease ABC, B subunit [Rhodothermus marinus DSM 4252]
          Length = 687

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/672 (53%), Positives = 469/672 (69%), Gaps = 15/672 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AIA+L +GI   +K Q LLG TG+GKTF ++ VI+ +QRP +VM+
Sbjct: 10  FELVAPFEPTGDQPRAIAELTEGILRGDKYQTLLGATGTGKTFVLSHVIQNVQRPTLVMS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFP+NAVE+F+SYYDYYQPEAY+P TDTYIEK+ +INE+IDR+R 
Sbjct: 70  PNKTLAAQLYGEFKQFFPNNAVEFFISYYDYYQPEAYIPATDTYIEKDLAINERIDRLRL 129

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT +L+  R D IVV+SVSCIYGIGS + Y + IV L +G  +E+ ELL  LV   Y R
Sbjct: 130 RATSALVSGRRDVIVVASVSCIYGIGSPDEYREQIVPLHVGQQIERNELLRRLVNIYYTR 189

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+    GTFRV GD ++IFP++ E+ A+R+  +G++I+ I+   P TG+       I I
Sbjct: 190 NDVEFKPGTFRVRGDVVDIFPAYAEESAFRIEFWGDEIDRIARLDPTTGELGAEETAITI 249

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +VTPR  L  A+  I+EEL+ RL  L  EG+LLEAQRLEQR  +D+EML   G C
Sbjct: 250 YPAKIFVTPRDRLERAIASIEEELRWRLAVLRAEGKLLEAQRLEQRTRFDIEMLREVGYC 309

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+GR PGE P  LF+Y P+D LL +DESHVTIPQ+  MY GD  RK TL E
Sbjct: 310 SGIENYSRHLSGRAPGERPYCLFDYFPDDYLLIIDESHVTIPQVRAMYNGDRARKLTLVE 369

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL FEE+  L    I VSATPG +ELE+  G++VEQIIRPTG+ DP V
Sbjct: 370 HGFRLPSALDNRPLTFEEFEALHHQVIFVSATPGDYELEKSGGVVVEQIIRPTGIPDPEV 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+ +EI     +G R L+T LTKRMAEDL EYL    +RVRY+HSE+  L
Sbjct: 430 EVRPTEGQIDDLLEEIRQVVARGERALVTTLTKRMAEDLAEYLDRFGVRVRYLHSEIDAL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++++R LRLG+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT GRAA
Sbjct: 490 ERVDLLRGLRLGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTAGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RN N K++LYAD IT+++Q  IDET RRR  QLE+N+KH I P++V +   E++      
Sbjct: 550 RNANGKILLYADRITEAMQRMIDETNRRRAIQLEYNRKHGITPRTVYKSREEILKSTIVA 609

Query: 734 --------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
                   D    E+     I  D     L+ ++ +  ++ LR++M  AA+NL FE AA 
Sbjct: 610 EEKYRPLVDSPRYEEPEVPPIVADPVLKELTPEQKRELIEQLRREMLEAAENLEFERAAE 669

Query: 786 IRDEIKRLKSSP 797
           +RD I  L+   
Sbjct: 670 LRDTILALEREL 681


>gi|220932459|ref|YP_002509367.1| excinuclease ABC, B subunit [Halothermothrix orenii H 168]
 gi|219993769|gb|ACL70372.1| excinuclease ABC, B subunit [Halothermothrix orenii H 168]
          Length = 672

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/660 (55%), Positives = 478/660 (72%), Gaps = 9/660 (1%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K    F++ + Y P GDQP AI +L+KG++   + Q LLG TG+GKT+TMA VIE + +P
Sbjct: 2   KTEKKFKLVSSYSPKGDQPQAIEKLVKGVNKGYRHQTLLGATGTGKTYTMAAVIEKLNKP 61

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LAAQL SEF+ FFP NAV YFVSYYDYYQPEAYVP+TDTYIEK++SINE I
Sbjct: 62  TLVIAHNKTLAAQLCSEFREFFPENAVHYFVSYYDYYQPEAYVPQTDTYIEKDASINEDI 121

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++R +AT SL ER D ++V+SVSCIYG+G+ E Y  +   LK+GD  E+  +L  L+  
Sbjct: 122 DKLRLAATSSLFERRDVLIVASVSCIYGLGNPEDYLDLSCHLKVGDLKERNTILQELIFM 181

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R DI + RG FRV GD I+IFP++ ++ A RV +FG++I+ I++   +TG+ ++ ++
Sbjct: 182 QYSRNDIDLSRGHFRVKGDVIDIFPAYRDE-AIRVELFGDEIDRITKINTVTGEVLQEID 240

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I IY  SH+VTP   +  A+K I+ EL+ RL EL+K+ RL+EAQRLEQR  YD+EMLE 
Sbjct: 241 EITIYPASHFVTPEDKIKRALKTIQVELEERLKELKKQNRLVEAQRLEQRTRYDMEMLEQ 300

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIP-EDSLLFVDESHVTIPQISGMYRGDFHRK 494
            G C  IENYSR+L GR PG  P TL +Y P +D L+ +DESH+TIPQI GMY GD  RK
Sbjct: 301 MGYCTGIENYSRHLEGRPPGSRPNTLLDYFPDDDFLVIIDESHMTIPQIGGMYAGDRSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L EYGFRLPS +DNRPL FEE+  L P  I VSATPG +EL+  Q  +VEQIIRPTGL
Sbjct: 361 EKLVEYGFRLPSALDNRPLNFEEFEKLVPRAIYVSATPGPYELKHSQQ-VVEQIIRPTGL 419

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           VDP V ++    Q++D+ DEI    ++  R+L+T LTKRMAEDLTE+L E  IRVRY+HS
Sbjct: 420 VDPVVIVKPTEGQIDDLMDEIQQVIEREERVLVTTLTKRMAEDLTEFLAEAGIRVRYLHS 479

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ TLER EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS+ SLIQT
Sbjct: 480 DIDTLERSEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQT 539

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARNVN +V++YAD IT+S++ AIDET RRR+ QLE NKKH I P ++ + + +V+ 
Sbjct: 540 IGRAARNVNGRVVMYADKITESMEKAIDETERRRKIQLEFNKKHGITPTTIVKPVRKVLR 599

Query: 735 PI------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           P       + E   +       +  +LS  + +  +  L ++M  AADNL FE AA+IRD
Sbjct: 600 PEDMIIKDVDEIDYSVKSGEGEEIKNLSPSEIRHRILELEEEMKEAADNLEFELAAQIRD 659


>gi|116490460|ref|YP_810004.1| excinuclease ABC subunit B [Oenococcus oeni PSU-1]
 gi|116091185|gb|ABJ56339.1| Excinuclease ABC subunit B [Oenococcus oeni PSU-1]
          Length = 673

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/661 (51%), Positives = 469/661 (70%), Gaps = 5/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL++G++   K Q+LLG TG+GKTFT++ VI ++ +P ++++
Sbjct: 11  FKLHSNYQPTGDQPTAINQLIEGVNKGTKEQVLLGATGTGKTFTISNVIASVNKPTLILS 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++R+
Sbjct: 71  HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRN 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL RND IVV+SVS I+G+G    Y   ++ L+ GD   +  L+  L+  QY R 
Sbjct: 131 SATSSLLSRNDTIVVASVSSIFGLGDPHQYKDHVISLRTGDEYGRNNLMRHLIDIQYVRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++ A RV  FG++I+ I E  PLTG+ +   + I I+
Sbjct: 191 DIDFARGTFRVRGDVVEIFPASEDEKAIRVEFFGDEIDRIREINPLTGEILLEDDFISIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T    L +A   I++E++  + + E++G+LLEAQRL+QR  YD+EML   G   
Sbjct: 251 PAKHFMTNDNILKSATDGIRQEMEECVKKFEQQGKLLEAQRLKQRTEYDIEMLLEMGYTN 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D LL VDESHVT+PQ+ GMY GD  RK TL +Y
Sbjct: 311 GIENYSRWMDGRKQGEPPFTLLDFFPKDFLLVVDESHVTMPQVRGMYNGDQARKKTLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ-CQGIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+  E+       I +SATPG +EL +     I EQIIRPTGL+DP +
Sbjct: 371 GFRLPSALDNRPLKLSEFEQHVNQVIYMSATPGDYELSRVTPDNIAEQIIRPTGLLDPEI 430

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  R Q++D+  EIN  A +  R+ +T LTKRM+EDLT YL E  ++V+Y+HS++KTL
Sbjct: 431 EVRPIRGQIDDLLGEINARAAKNERVFITTLTKRMSEDLTTYLKESGVKVQYLHSDIKTL 490

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER E+IR+LRLGKFD LVGINLLREGLD+PE  LVAILDADK+GFLR++ SLIQTIGRAA
Sbjct: 491 ERTEVIRNLRLGKFDALVGINLLREGLDVPEVSLVAILDADKDGFLRNERSLIQTIGRAA 550

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736
           RN N  VI+YAD +T+++Q AIDET RRR  Q+++N++HNI P ++K++I   I     +
Sbjct: 551 RNSNGHVIMYADVVTENMQKAIDETARRRRIQIKYNEEHNITPTTIKKEIRGSIAISHEV 610

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              D +  +++  A    +  K  K  + +L +QM  AA  ++FEEAA++RD I  LK+ 
Sbjct: 611 QSADESKLDLTKVA-FADMPIKDQKEMVGNLTEQMKSAAKRMDFEEAAQLRDSILELKTE 669

Query: 797 P 797
            
Sbjct: 670 M 670


>gi|320161399|ref|YP_004174623.1| uvrABC system protein B [Anaerolinea thermophila UNI-1]
 gi|319995252|dbj|BAJ64023.1| uvrABC system protein B [Anaerolinea thermophila UNI-1]
          Length = 680

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/658 (53%), Positives = 471/658 (71%), Gaps = 4/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P GDQP AI +L++GI    + Q+LLG TG+GKTFTMA +I  +  PA+V+A
Sbjct: 3   FKLHAPFQPMGDQPEAIEKLVEGIRQGMRHQVLLGATGTGKTFTMANIIARLNMPALVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK FFP NAVEYFVSYYDYYQPEAYVP+ D YIEK++ INE+I+R+R 
Sbjct: 63  HNKTLAAQLYAEFKEFFPENAVEYFVSYYDYYQPEAYVPQRDLYIEKDADINEEIERLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L+ R D I+V+SVSCIYG+GS E Y +  V L++G    +  LL  LV+ QY+R 
Sbjct: 123 SATTALMTRRDVIIVASVSCIYGLGSPEEYGKKAVTLEVGHIYRRNALLRILVESQYQRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ +  G FRV G+++E+FP++ E  A+R+  FG+++E I EF PLTG+       I I+
Sbjct: 183 DVELRPGVFRVRGETLEVFPAYEERRAYRIQFFGDEVERILEFNPLTGEVYGQPAQISIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HYVT   +L  A++ I+EEL+ R+   + +G+LLEAQR+EQR  YDLEML   G C 
Sbjct: 243 PAKHYVTKEESLEKAIQDIEEELQERIAFFKSQGKLLEAQRIEQRTLYDLEMLREVGYCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R PG PP TL +Y+P + LLF+DESH++IPQI GMY GD  RK  L +Y
Sbjct: 303 GIENYSRHLDQRPPGSPPWTLIDYLPSEYLLFIDESHMSIPQIRGMYNGDRSRKQVLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       I  SATPG +E+ + +  +VEQIIRPTGLVDP VE
Sbjct: 363 GFRLPSALDNRPLKFDEFEQHMGYVIYTSATPGPYEMARAEQ-VVEQIIRPTGLVDPEVE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI +  + G R+L+T LTKRMAEDL+EYL E  I+V Y+HSEV+TLE
Sbjct: 422 VRPTTGQIDDLIHEIRMRIEVGERVLVTTLTKRMAEDLSEYLMELGIKVHYLHSEVETLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ I+RDLRLG FDV+VGINLLREGLD+PE  LVAILDADKEGFLRS T+LIQTIGRAAR
Sbjct: 482 RVGILRDLRLGVFDVVVGINLLREGLDLPEVSLVAILDADKEGFLRSATALIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ KVI+YAD IT ++++AIDET RRR KQ+ +N+K  I P S+++ + ++   + ++ 
Sbjct: 542 NVHGKVIMYADYITDAMRMAIDETNRRRAKQMAYNEKMGIIPVSIQKAVHDITQQMGVQP 601

Query: 741 ---AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              A         +   L++ + +  ++ L KQM  AA NL FE AA +RDE+  LK+
Sbjct: 602 QMVAEKGGSYRTGKSHGLARHELQRMIQELEKQMKEAARNLEFERAAALRDEMFELKA 659


>gi|269797771|ref|YP_003311671.1| excinuclease ABC subunit B [Veillonella parvula DSM 2008]
 gi|269094400|gb|ACZ24391.1| excinuclease ABC, B subunit [Veillonella parvula DSM 2008]
          Length = 725

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/688 (51%), Positives = 481/688 (69%), Gaps = 28/688 (4%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    F+++  + P+GDQP AI  L +GI   E  Q+LLG TG+GKTFTMAKVIEA+Q+P
Sbjct: 9   EGGQPFKVEAPFTPTGDQPTAIQSLTEGIERGEWAQVLLGATGTGKTFTMAKVIEAVQKP 68

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +++A NK LAAQL SEFK+FFP+NAVEYFVSYYD+YQPEAY+P +DTYIEK++SIN++I
Sbjct: 69  TLIIAHNKTLAAQLCSEFKSFFPNNAVEYFVSYYDFYQPEAYIPSSDTYIEKDASINDEI 128

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SL ER D I+V+SVSCIYG+G  E YS +++ L++G +  + E+LS LV  
Sbjct: 129 DKLRHSATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQTKSRDEILSKLVDI 188

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D+  IRGTFRV GD+I+IFP+   + A RV +FG++I+ + E   LTG+ I   +
Sbjct: 189 QYTRNDMNFIRGTFRVQGDTIDIFPAAYSERAIRVELFGDEIDRLVEVDSLTGEVIAERK 248

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + +Y  SHYVT +  +N A++ I+ EL  +L +L+   RLLEAQRLEQR  YD+EM++ 
Sbjct: 249 HVAVYPASHYVTTKEKMNIAVERIEAELDEQLAKLKAADRLLEAQRLEQRTRYDIEMMQE 308

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR+++ R  GE P TL +Y P+D L+ VDESHVT+PQI  MY GD  RK 
Sbjct: 309 MGYCSGIENYSRHMSERKAGEAPFTLIDYFPDDFLIMVDESHVTMPQIRAMYNGDRARKE 368

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           +L EYGFRLPS +DNRPL+F+E+       + VSATPG +E+E  +  I EQIIRPTGL+
Sbjct: 369 SLIEYGFRLPSALDNRPLQFDEFVERINQIVYVSATPGPYEME-VETNIAEQIIRPTGLL 427

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR  + Q++D+  EI+  A +  R+L+T LTK+MAEDLTE+L E  +RVRY+HS+
Sbjct: 428 DPSIEIRPIKGQMDDLLGEIHKRAAKNERVLVTTLTKKMAEDLTEFLKEMGVRVRYLHSD 487

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + T+ER EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T++IQTI
Sbjct: 488 IVTIERAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTI 547

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNVN  VI+YAD +T S+Q AIDET RRR  Q  +N +HNI P+SV + + E+I+ 
Sbjct: 548 GRAARNVNGHVIMYADRVTGSMQRAIDETDRRRAVQEAYNIEHNITPKSVSKDVKELIEL 607

Query: 736 ILLED---------------------------AATTNISIDAQQLSLSKKKGKAHLKSLR 768
             +E+                            +    +   +   ++ ++    ++ L 
Sbjct: 608 TKIEEDMVTEGKGLSPKKGKQKKSSEGMDHGHESYVQDTSAPKVADITLEELYNKIEELD 667

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +QM  AA  L FE AA++RD++  L+  
Sbjct: 668 RQMKAAAKQLEFESAAKLRDQLGVLRQQ 695


>gi|297559941|ref|YP_003678915.1| excinuclease ABC subunit B [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844389|gb|ADH66409.1| excinuclease ABC, B subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 699

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/698 (50%), Positives = 482/698 (69%), Gaps = 24/698 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             +++  +    F++ ++  P+GDQP AIA++ + +   E   +LLG TG+GKT T+A  
Sbjct: 2   RPVSDIKRSEAPFEVISEMTPAGDQPGAIAEISRRVRDGEPHTVLLGATGTGKTATVAWT 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           +E +QRP +VM PNK LAAQ  +E +   P+NAVEYFVSYYDYYQPEAYVP++DT+IEK+
Sbjct: 62  VEQLQRPTLVMQPNKTLAAQFANELRQMLPNNAVEYFVSYYDYYQPEAYVPQSDTFIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN++++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   + QL +G  V++ +L
Sbjct: 122 SSINDEVERLRHSATNSLLTRRDTIVVASVSCIYGLGTPQEYVDRMAQLAVGMEVDRDDL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV+ QY R D    RGTFRV GD+IEI P + E++A R+ MFG+++E +   +PLTG
Sbjct: 182 LRRLVEMQYSRNDTAFTRGTFRVRGDTIEIIPVY-EELAIRIEMFGDEVERLLTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + +     + I+  SHYV        A+  I+ EL  RL ELE +G+LLEAQRL  R T+
Sbjct: 241 EVLGESREMFIFPASHYVAGEERTERAIATIEAELGERLAELEAQGKLLEAQRLRMRTTH 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEM+   G+C  IENYSR+  GR PG PP TL +Y PED LL +DESHVT+PQI  MY 
Sbjct: 301 DLEMMRQLGTCSGIENYSRHFDGREPGSPPNTLLDYFPEDFLLVLDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS +DNRPL++EE+      ++ +SATPG +EL Q  G +VEQ+
Sbjct: 361 GDAARKRTLVEHGFRLPSALDNRPLKWEEFTERIGQSVYLSATPGRYELRQGGGEVVEQV 420

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI + A++  R+L+T LTK+M+EDLT+Y  E  IR
Sbjct: 421 IRPTGLVDPEVLVKPTDGQIDDLVHEIRVRAERDERVLVTTLTKKMSEDLTDYFTELGIR 480

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSEV TL R+E++R+LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+
Sbjct: 481 VRYLHSEVDTLRRVELLRELRVGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 540

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV  +V +YAD +T S++ AIDET RRR+KQL +N +H I+P  ++++
Sbjct: 541 TSLIQTIGRAARNVAGQVHMYADNVTDSMRAAIDETNRRRDKQLAYNAEHGIDPTPLRKQ 600

Query: 729 IMEVIDPILLEDAATTNI---------------------SIDAQQLSLSKKKGKAHLKSL 767
           I +++D +  ED  T  +                        A   ++ + +    ++ L
Sbjct: 601 IADILDTLNREDVDTEELMATGYRSSGGRGGRAPVPALGERSADVSAMPRAELAGLIEQL 660

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
            +QMH AA +L FE AAR+RDEI  LK     +G+D +
Sbjct: 661 SEQMHQAATDLQFELAARLRDEIGELKRE--LRGMDAA 696


>gi|170726900|ref|YP_001760926.1| excinuclease ABC subunit B [Shewanella woodyi ATCC 51908]
 gi|169812247|gb|ACA86831.1| excinuclease ABC, B subunit [Shewanella woodyi ATCC 51908]
          Length = 671

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/661 (54%), Positives = 478/661 (72%), Gaps = 6/661 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+++ Y P+GDQP AI +L+ GI S    Q LLGVTGSGKTFT+A VI+ M RP I+
Sbjct: 4   SSFQLESQYVPAGDQPKAIKKLVDGIESGLACQTLLGVTGSGKTFTIANVIKEMSRPTII 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY E K FFPHNAVEYFVSYYDYYQPEAYVP T+T+IEK++S+N  I++M
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTNTFIEKDASVNAHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++++SVS IYG+G  +SY +M++ L+ GD++ Q+++L  L + QY 
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYMKMLLHLRQGDTMGQRDILHRLSELQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI + RGT+RV G+ I+IF +  +  A RV +F ++IE +S F PLTG  ++ +    
Sbjct: 184 RNDIELKRGTYRVRGEVIDIFAADSDSNAIRVELFDDEIERLSLFDPLTGHILQRIARTT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYVTPR  +  A + IKEEL+ R  +L    +L+E QR+ +R+ YD+EM+   G 
Sbjct: 244 VYPKSHYVTPREKILAASEEIKEELRERKKQLLDNNKLIEEQRITERVQYDIEMMVELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  G  PPTL +Y+P+D LL +DESHVT+PQI  MY+GD  RK  L 
Sbjct: 304 CSGIENYSRYLSGREEGAGPPTLLDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKMNLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATP ++E+E+  G I EQ+IRPTGL+DP 
Sbjct: 364 EYGFRLPSALDNRPLKFEEFESLMPQTIFVSATPANYEIEKSDGEIAEQVIRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    QV+D+  E+    +   R+L+T LTKRM+EDLTEYL E  ++VRY+HS++ T
Sbjct: 424 LEVRPVAIQVDDLLSEVRKRVKVQERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N KVILYAD IT S+  A+ ET RRR+ Q + N  + + P+ V +KI +V+D    
Sbjct: 544 ARNMNGKVILYADKITDSMAKAMGETERRRKLQHQFNLDNGLVPKGVSKKITDVMDVGEK 603

Query: 739 ED-----AATTNISIDAQQLSLSKKKGKAH-LKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           E      A+  +I+       ++     +H + +L K+MH  A NL FE+AA +RD+++R
Sbjct: 604 EYVQNDLASIRDIAESKGDYKVNDVASISHQIDTLEKKMHEHAKNLEFEQAAAVRDQVRR 663

Query: 793 L 793
           L
Sbjct: 664 L 664


>gi|317495353|ref|ZP_07953723.1| excinuclease ABC [Gemella moribillum M424]
 gi|316914775|gb|EFV36251.1| excinuclease ABC [Gemella moribillum M424]
          Length = 665

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/656 (53%), Positives = 459/656 (69%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q+ Y P GDQ  AI +L +G+++ EK Q LLG TG+GKTFT+A +++ + +P +V+A
Sbjct: 10  FDLQSSYEPKGDQVNAIRELTEGLNNGEKYQTLLGATGTGKTFTIANIVKNVGKPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY+E K FFP+N VEYFVSYYDY+QPEAYVP TDTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYNELKEFFPNNRVEYFVSYYDYFQPEAYVPSTDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL +R+D I+VSSVSCIYG+GS E YS +++ L++GD + + ++L  L+  QY R 
Sbjct: 130 SATSSLFDRDDVIIVSSVSCIYGLGSPEEYSSLVLSLRVGDEINRNKILEKLINIQYMRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  IRGTFRV GD IEIFP+   + + R+ MFG++IE I E   LTG+ +  +  I IY
Sbjct: 190 DIDFIRGTFRVRGDVIEIFPASRSENSVRIEMFGDEIERIREINSLTGEVLSELNHIAIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+V        A+K I+ EL+ RL     E +LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 250 PASHFVAGEEKTKEAIKRIRAELEDRLKVFNLENKLLEAQRLEQRTNYDLEMMEEMGFCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R PG  P TL +Y P+D LL VDESHVT+PQ+ GM+ GD  RK  L +Y
Sbjct: 310 GIENYSLHLTLREPGSTPYTLLDYFPKDWLLVVDESHVTLPQVRGMFNGDRARKQVLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL + E+       I VSATPG +ELE     I EQIIRPTGL+DP ++
Sbjct: 370 GFRLPTALDNRPLNYTEFENKLNQAIFVSATPGDYELEHS-SKITEQIIRPTGLLDPIID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV D+  E     ++G R+L+T LTK+MAE LT YL E  ++V Y+HS++KTLE
Sbjct: 429 IRPVSDQVFDITKEAEKIIEKGERVLITTLTKKMAEALTAYLKENGLKVEYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLGKFD+LVGINLLREGLDIPE  LVAILDADKEGFLR   +L+QTIGRAAR
Sbjct: 489 RTEIIRNLRLGKFDILVGINLLREGLDIPEVSLVAILDADKEGFLRGDKALLQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S++ AIDET RRRE Q+ +N++H I PQ++ + I + I     ++
Sbjct: 549 NANGRVIMYADNITRSMRKAIDETNRRREIQMAYNEEHGITPQTIIKGIRDSI--SAKKE 606

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                    AQ  +++    + HL  L ++M  AA   +FE AA +RD I  LK  
Sbjct: 607 VLPDESVELAQDTNITDDNIEEHLAELEQEMFAAAGKFDFERAAVLRDTIAELKEK 662


>gi|302561243|ref|ZP_07313585.1| excinuclease ABC, B subunit [Streptomyces griseoflavus Tu4000]
 gi|302478861|gb|EFL41954.1| excinuclease ABC, B subunit [Streptomyces griseoflavus Tu4000]
          Length = 716

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/708 (50%), Positives = 480/708 (67%), Gaps = 41/708 (5%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++   + +  F++ + Y P+GDQP AIA L + I + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVSQIERSVAPFEVVSPYQPNGDQPTAIADLARRIGAGEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V L++GD  ++ EL
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLRVGDEFDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG
Sbjct: 182 LRRFVDIQYTRNDMAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I + + + I+  SHYV     L  A+  I++EL  RL +LEK+G+LLEAQRL  R TY
Sbjct: 241 EIISDDQQLYIFPASHYVAGPERLERAVNDIEKELGERLTDLEKQGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EML   GSC  +ENYS +  GR+PG PP TL +Y P+D LL +DESHVT+PQI  MY 
Sbjct: 301 DIEMLRQIGSCSGVENYSMHFDGRSPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G +VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLKWEEFQERVGQTVYLSATPGQYELSRSDG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+
Sbjct: 420 IRPTGLVDPEVVVKPTEGQIDDLVHEIRTRVEKDERVLVTTLTKKMAEDLTDYFLELGIQ 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSDVDTLRRVELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +N  + I+PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQVAYNTANGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI---------------------------------------SID 749
           I +++  I  ED  T  +                                       + +
Sbjct: 600 INDIVAQIAREDIDTEQLLGSGYRQAKKDGGGTKAPVPSLGGKAAKAAKGAKSAKGRAAE 659

Query: 750 AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                    +    ++ L  +M  AA +L FE AAR+RDE+  +K   
Sbjct: 660 TVPTDRPAAELTEQIEELTARMRTAAADLQFEIAARLRDEVSEMKKEL 707


>gi|210621604|ref|ZP_03292717.1| hypothetical protein CLOHIR_00662 [Clostridium hiranonis DSM 13275]
 gi|210154669|gb|EEA85675.1| hypothetical protein CLOHIR_00662 [Clostridium hiranonis DSM 13275]
          Length = 660

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/660 (52%), Positives = 466/660 (70%), Gaps = 5/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + P+GDQP AI  +   I   EK   LLGVTGSGKTFTMA +IE + +P +
Sbjct: 1   MDKFKIHSKFKPTGDQPEAIKTISDAIKRNEKFSTLLGVTGSGKTFTMANIIENVNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV  +DTYIEK++SIN++ID+
Sbjct: 61  ILAHNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVASSDTYIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +LLER D I++SSVSCIYG+G  + Y +M++ L+ GD  ++ +++  L++ QY
Sbjct: 121 LRHSATAALLERRDVIIISSVSCIYGLGDPKDYKEMMLSLRPGDEKDRDDVIKRLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD +EIFP+  ++ A RV  FG++I+ I+E   +TG+ +     +
Sbjct: 181 ERNDINFTRGTFRVRGDVLEIFPAGDDEKAIRVEFFGDEIDRITEIDYITGKIVGTRSHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYVT    +  A+K I+ EL+ R+   ++   LLEAQR+EQR  YD+EML+  G
Sbjct: 241 AIFPASHYVTTPERIEEAIKRIEAELEERIQYFKERDMLLEAQRIEQRTNYDIEMLKEIG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+LTGR  GE P TL ++ PED L+ VDESHVTIPQ+ GMY GD  RK +L
Sbjct: 301 FCQGIENYSRHLTGRGEGEKPYTLMDFFPEDFLMIVDESHVTIPQVRGMYAGDRSRKGSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            + GFRLPS  DNRPL FEE+       +  +ATPG +E++       EQIIRPTGL+DP
Sbjct: 361 IDNGFRLPSAYDNRPLNFEEFEENINQIVFTTATPGPYEIQHS-TTFAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R    Q++++  EI    ++G R+L+T LTK+M+EDLT+YL E  I+V+Y+HS++ 
Sbjct: 420 EIDVRPIENQIDNLVHEIYSVIEKGERVLVTTLTKKMSEDLTDYLKEIGIKVKYLHSDIA 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRDLR+GKFDVL+GINLLREGLDIPE  L+AILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERTEIIRDLRMGKFDVLIGINLLREGLDIPEVSLIAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN + +VI+YAD IT S++ AIDET RRRE Q  +NK+H I P++VK+ I   I+   
Sbjct: 540 AARNEHGRVIMYADKITDSMRNAIDETKRRREIQDAYNKEHGIIPKTVKKDIRAAIEATQ 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             +        +   +     + KA++  L ++M  AA NL FE AA +RD++K L+   
Sbjct: 600 AAEEEVVYGIKETDDI----DELKANVAKLTEEMMEAAKNLQFERAAELRDKLKELEEKI 655


>gi|67921104|ref|ZP_00514623.1| Excinuclease ABC, B subunit [Crocosphaera watsonii WH 8501]
 gi|67857221|gb|EAM52461.1| Excinuclease ABC, B subunit [Crocosphaera watsonii WH 8501]
          Length = 680

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/664 (52%), Positives = 460/664 (69%), Gaps = 4/664 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F ++  + P+GDQP+AI QL K I +  + Q LLG TG+GKTF++A VIE + +P +V
Sbjct: 16  PIFNLKAPFKPTGDQPSAIKQLTKSIEAGNRFQTLLGATGTGKTFSVAAVIENIGKPTLV 75

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQL +EF+ FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID +
Sbjct: 76  LAHNKTLAAQLCNEFRQFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKTASINDEIDML 135

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSATRSL ER D IVV+S+SCIYG+G    Y +  V L +G  V+Q++LL  LV  QY 
Sbjct: 136 RHSATRSLFERKDVIVVASISCIYGLGMPSEYLKASVPLVVGKEVDQRQLLRDLVTIQYS 195

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG  + +++ I 
Sbjct: 196 RNDLELQRGRFRVKGDVLEIVPAY-EDRVIRVEFFGDEIDAIRYLDPVTGDILNSLKNIN 254

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY   H+VTP   L  A + I  ELK ++  LEK G+LLE QR+ QR  YDLE+L   G 
Sbjct: 255 IYPARHFVTPDEQLEFACEAIDIELKQQVQCLEKAGKLLELQRINQRTRYDLELLREVGY 314

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  +ENYSR+L GR  G PP  L +Y P D LL VDESHVT+PQI GMY GD  RK  L 
Sbjct: 315 CNGVENYSRHLAGRKAGSPPECLVDYFPRDWLLIVDESHVTVPQIRGMYNGDQARKKVLI 374

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS  DNRPL+ EE+       I VSATPG+WE+EQ +  ++EQIIRPTG++DP 
Sbjct: 375 DHGFRLPSAADNRPLKSEEFWDKVNQCIFVSATPGNWEIEQSEERVIEQIIRPTGVLDPE 434

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R    QV+D+  EI    ++  R+L+T LTKRM+EDLTEY  ER+I+VRY+HSE+K+
Sbjct: 435 IFVRPTEGQVDDLLGEIKQRVKRQERVLITTLTKRMSEDLTEYFQERDIKVRYLHSEIKS 494

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ERIEI++ LR G+FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 495 IERIEILQALRNGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAEKSLIQTIGRA 554

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           AR+VN + ILY D +T S+  A++ET RRR  Q+ HNK+HNI P+ + ++    I   L 
Sbjct: 555 ARHVNGQAILYGDNLTDSMIKAMEETERRRNIQMAHNKRHNITPKPIIKRSSNAILSFLD 614

Query: 739 EDAATTNISIDA---QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                 +  ++    Q   L   K    ++ L +QM  AA NL FEEAA+ RD+IKRL+ 
Sbjct: 615 ISRRLNSQELEEVYTQADDLPLDKVPELIQQLEQQMQEAAKNLEFEEAAKYRDKIKRLRD 674

Query: 796 SPYF 799
               
Sbjct: 675 KILG 678


>gi|167626315|ref|YP_001676815.1| excinuclease ABC subunit B [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596316|gb|ABZ86314.1| excinuclease ABC, B subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 668

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/667 (53%), Positives = 479/667 (71%), Gaps = 7/667 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + T Y P+GDQP AI  L++GI++  + Q+LLGVTGSGKT+TMA VI+  Q+P +
Sbjct: 1   MNKFNLVTKYAPAGDQPNAIKSLVEGINNGLQHQVLLGVTGSGKTYTMANVIQQTQKPCL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++
Sbjct: 61  IVAHNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY
Sbjct: 121 MRLSATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +KI+ +   
Sbjct: 181 SRNDMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKIKTLHRA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+ ++HYV  +   +  ++ IK ELK R+   E+EG+LLEAQR+EQR  YD+EM++  G
Sbjct: 241 TIFPSTHYVASKERKDIVIEEIKAELKERVKYFEEEGKLLEAQRIEQRTKYDIEMIQELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RK+ L
Sbjct: 301 YCTGIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   VEQ+IRPTGL+DP
Sbjct: 361 VNYGFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R    QVED   EIN A  +  RIL+T LTK+MAE+LTEYL E  + VRY+HS++ 
Sbjct: 420 EVFVRPVAIQVEDALSEINKAIAKEERILITTLTKKMAENLTEYLSEHGVNVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--P 735
            ARN N + ILYAD +TKS++ A+DET RRR+ Q EHNKK+NI P+++ + I +++D  P
Sbjct: 540 VARNQNGRAILYADVVTKSMKKAMDETLRRRQLQDEHNKKNNITPKTIIKSIDDMLDSSP 599

Query: 736 ILLEDAATTNISIDAQQLSLSK----KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            + + A   N  +    + +S      +    +K+L K+M   A  L FE+A  IRD+I 
Sbjct: 600 EMQKRAYKNNSRLKVDDVDVSAILGMTEASKVIKALEKRMRAYAKELEFEQATAIRDKIT 659

Query: 792 RLKSSPY 798
            +K    
Sbjct: 660 EIKQKFI 666


>gi|297626691|ref|YP_003688454.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922456|emb|CBL57029.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 694

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/692 (50%), Positives = 478/692 (69%), Gaps = 22/692 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++  ++ +  F++  D+ PSGDQP AI +L + I + E+  +L+G TG+GKT T+A +
Sbjct: 2   RPVDTITRTVAPFKVHADFEPSGDQPQAIEELARRIEAGEQDVVLMGATGTGKTATVAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
            E +QRP +VM PNK LAAQ  +E + FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK+
Sbjct: 62  AERLQRPMLVMQPNKTLAAQYATELRGFFPDNAVEYFVSYYDYYQPEAYVPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+NE+++R+R+SAT SLL R D IVV++VS IYG+G+ + Y   ++ LK+G   ++  L
Sbjct: 122 SSLNEEVERLRYSATNSLLTRRDVIVVATVSAIYGLGTPQEYVDQMINLKVGQEWDRSNL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV+ QY R D+   RGTFRV GD++EIFP + E+ A RV  FG++IE ++   PLTG
Sbjct: 182 LRRLVEVQYVRNDMAATRGTFRVRGDTLEIFPMY-EEFAIRVEFFGDEIEALTTLNPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + +   + + ++  SHY      +  A+  I+ EL  RL ELEK+ +LLEAQRL  R  Y
Sbjct: 241 EIVSEDKQVYVFPASHYTAGPERMARAITDIEAELADRLAELEKDNKLLEAQRLRMRTNY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G+C  IENYSR++ GR  G PP  L +Y PED +L +DESHVT+PQI GMY 
Sbjct: 301 DIEMMRQIGTCSGIENYSRHIDGRPAGSPPNCLLDYFPEDFVLVIDESHVTVPQIGGMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS MDNRPLRFEE+      T+  SATPG +EL +  G +VEQI
Sbjct: 361 GDMSRKRTLVDHGFRLPSAMDNRPLRFEEFTERIGQTVYSSATPGPYELARGNG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI   A++  R+L+T LTK+MAEDLT+YL E  +R
Sbjct: 420 IRPTGLVDPEVIVKPTHGQIDDLMGEIKARAKKDERVLVTTLTKKMAEDLTDYLMEHGVR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            RY+HSEV TL+R+E++R+LR+G++DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS 
Sbjct: 480 TRYLHSEVDTLKRVELLRELRMGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSD 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +V +YAD +T S+  AIDET RRR+ Q+++NK H ++PQ +++K
Sbjct: 540 RSLIQTIGRAARNVSGQVHMYADQMTPSMTKAIDETNRRRQIQVDYNKAHGVDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISID------------------AQQLSLSKKKGKAHLKSLRKQ 770
           I ++ D ++ EDA T  +  D                   +  +L   +    ++ L  Q
Sbjct: 600 IADITDMLVREDADTDKLLADTRGSGHEASALPTTSDKHKRGENLPATELAGLIQELTAQ 659

Query: 771 MHLAADNLNFEEAARIRDEIKRLKSSPYFQGL 802
           MH AA  L FE AAR+RDEI  LK     +G+
Sbjct: 660 MHSAAGELQFELAARLRDEIADLKKE--LRGM 689


>gi|269926387|ref|YP_003323010.1| excinuclease ABC, B subunit [Thermobaculum terrenum ATCC BAA-798]
 gi|269790047|gb|ACZ42188.1| excinuclease ABC, B subunit [Thermobaculum terrenum ATCC BAA-798]
          Length = 658

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/658 (53%), Positives = 479/658 (72%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +D  P GDQP AI  L++G+ +  + Q LLG TG+GKTFT+A VIE +QRP +
Sbjct: 1   MGEFKIISDLRPVGDQPKAIEALVEGVRAGMRHQTLLGATGTGKTFTVANVIERLQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLY+EFK FFP+NAVEYFVSYYDYYQPEAY+P+TDTYIEK++ IN++ID+
Sbjct: 61  VIAHNKTLAAQLYAEFKEFFPNNAVEYFVSYYDYYQPEAYIPQTDTYIEKDTEINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+AT +LLER D I+V+SVSCIYG+GS E YS+ ++ LK GD+V   +++  LV+ QY
Sbjct: 121 LRHAATMALLERRDVIIVASVSCIYGLGSPEEYSKFVISLKRGDTVRLSKVIRRLVEAQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D  + RGTFRV GD++EI P++ ++VA R+  FG++I+ I+E  PLTG+ +      
Sbjct: 181 ERNDQSLSRGTFRVRGDTLEIQPAY-DEVALRIEFFGDEIDRITEIDPLTGEVLIERTKA 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VT +  L  A+K I+EEL+ R     ++G+++EA+RL+QR  YDLEML   G
Sbjct: 240 DIYPRKHFVTSQERLQEAIKAIREELEERYNWFIEQGKIVEAERLKQRTLYDLEMLSEAG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L+GR PGEPP TL +Y P+D LL VDESH+T+PQI GMY GD  RK  L
Sbjct: 300 YCSGVENYSRHLSGRKPGEPPITLLDYFPDDFLLIVDESHITLPQIRGMYAGDRSRKEVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL F+E+       I VSATPG WE E  +  IV QIIRPTGL+DP
Sbjct: 360 VQYGFRLPSALDNRPLTFDEFQSHIVNAIYVSATPGPWEEEHSEQ-IVHQIIRPTGLLDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    Q++D+ +E++    +G R+++T L KRMAE+L++YL E  I+ RY+H E+ 
Sbjct: 419 EISVRPTEGQIDDLLEEVHERVSKGQRVIITTLNKRMAEELSDYLSEMGIKNRYIHHEID 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+EI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQ IGR
Sbjct: 479 TLERVEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQMIGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V  KVI+YADTIT+S+Q AIDET RRR  Q+E+N KHNI P S+ +++ ++ + + 
Sbjct: 539 AARHVEGKVIMYADTITESMQKAIDETNRRRAIQMEYNLKHNIVPASIVKEVRDITERVK 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               +      D   ++LSK +    +K L  QM  AA  L FE+AA +RD+I  L+ 
Sbjct: 599 AIAESKEQYRADG-AVNLSKDEIFRMIKDLESQMKQAAKALEFEKAAILRDQIAELRK 655


>gi|256379520|ref|YP_003103180.1| excinuclease ABC subunit B [Actinosynnema mirum DSM 43827]
 gi|255923823|gb|ACU39334.1| excinuclease ABC, B subunit [Actinosynnema mirum DSM 43827]
          Length = 723

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/704 (49%), Positives = 486/704 (69%), Gaps = 28/704 (3%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
               +++  +    F++ +++ PSGDQPAAIA+L + +   E+  +LLG TG+GK+ T A
Sbjct: 20  AHRPVSDIPRSAGEFRVVSEFTPSGDQPAAIAELERRLRGGERDVVLLGATGTGKSATTA 79

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            ++E +QRP +VMAPNK LAAQL +E ++ FP NAVEYFVSYYDYYQPEAY+P++DTYIE
Sbjct: 80  WLVEKVQRPTLVMAPNKTLAAQLANELRDLFPENAVEYFVSYYDYYQPEAYIPQSDTYIE 139

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+SS+NE ++R+RHSAT SLL R D IVV+SVSCIYG+G+ ++Y    + L++G  V++ 
Sbjct: 140 KDSSVNEDVERLRHSATMSLLTRRDVIVVASVSCIYGLGTPQAYLDRSIPLRVGGEVDRD 199

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
            LL +LV  QY R DI   RGTFRV GD++EI PS+ E++A RV  FG++++ +   +PL
Sbjct: 200 VLLRALVDVQYARNDIAFNRGTFRVRGDTVEIIPSY-EELAIRVEFFGDEVDRLYYLHPL 258

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG  ++ V+ ++I+  +HY      +  A+K I+ EL+ RL +LE++G+LLEAQRL  R 
Sbjct: 259 TGDVVKEVQELRIFPATHYAAGPERMEIAIKGIEVELEQRLADLERQGKLLEAQRLRMRT 318

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
           TYD+EM+   G C  IENYSR++ GR+ G  P TL +Y P+D LL +DESHVT+PQI  M
Sbjct: 319 TYDIEMMRQVGFCSGIENYSRHIDGRDAGSAPATLIDYFPDDFLLVIDESHVTVPQIGAM 378

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           Y GD  RK  L ++GFRLPS +DNRPL +EE+      TI +SATPG++EL Q  G  VE
Sbjct: 379 YEGDASRKRNLVDHGFRLPSALDNRPLTWEEFADRVGQTIYLSATPGNYELGQAGGEFVE 438

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q+IRPTGLVDP V ++    Q++D+  EI   A++  R+L+T LTK+M+EDLT+YL E  
Sbjct: 439 QVIRPTGLVDPQVVVKPTEGQIDDLVHEIRARAERDERVLVTTLTKKMSEDLTDYLLELG 498

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           IRVRY+HS++ TL R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDADKEGFLR
Sbjct: 499 IRVRYLHSDIDTLRRVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLR 558

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S TSLIQTIGRAARNV+ +V +YAD +T S++ AI+ET RRR KQ+ +N++  I+PQ ++
Sbjct: 559 STTSLIQTIGRAARNVSGEVHMYADRVTDSMRNAIEETNRRRAKQVAYNEERGIDPQPLR 618

Query: 727 EKIMEVIDPILLE-------------------------DAATTNISIDAQQLSLSKKKGK 761
           +KI ++++ +  E                          A ++ +       S+++ +  
Sbjct: 619 KKITDILEQVYAEVEDDVAPGGSGRNATRGKRAAGEPGKAGSSGVLAGRDVGSMARAELA 678

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             ++ L  QM  AA  L FE A R+RDEI  LK     +G+D +
Sbjct: 679 DLVQQLTDQMMNAARELQFELAGRLRDEIADLKKE--LRGMDAA 720


>gi|115380116|ref|ZP_01467152.1| excinuclease ABC, B subunit [Stigmatella aurantiaca DW4/3-1]
 gi|310820625|ref|YP_003952983.1| UvrABC system protein B [Stigmatella aurantiaca DW4/3-1]
 gi|115362876|gb|EAU62075.1| excinuclease ABC, B subunit [Stigmatella aurantiaca DW4/3-1]
 gi|309393697|gb|ADO71156.1| UvrABC system protein B [Stigmatella aurantiaca DW4/3-1]
          Length = 702

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/657 (54%), Positives = 470/657 (71%), Gaps = 1/657 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  FQ+ + + P GDQP AIA+L +G+   ++ Q LLGVTGSGKTFTMA +I  +QRP +
Sbjct: 7   MPDFQIVSAHAPQGDQPRAIAELTEGVLRGDRYQTLLGVTGSGKTFTMANLIANVQRPTL 66

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLY EFK  FPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSIN++I+R
Sbjct: 67  IIAHNKTLAAQLYGEFKEVFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINDEIER 126

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSAT SL  R+D ++V+SVSCIYG+G+  SY  M   + +G  + +   +  L++ QY
Sbjct: 127 MRHSATHSLRTRDDVVIVASVSCIYGLGAARSYVDMAATVTLGAELGRDAFMRKLIESQY 186

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D    RGTFR  GD++E+FP++ E+ A RVS FG+++E+I+EF PL G  +  ++ I
Sbjct: 187 ERSDFDFHRGTFRARGDTVEVFPAYEEERAVRVSFFGDEVEKITEFDPLRGVTLGTLDKI 246

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHY T   T   A++ I++EL  RL E +++G+LLEAQR+EQR  +DLEM+E  G
Sbjct: 247 VIFPASHYATEGDTRKKAVQTIRDELSERLQEFKRDGKLLEAQRIEQRTMFDLEMIEQVG 306

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+ +GR PGEPPP L +Y P + L+ VDESH T+ QI  MYRGD  RK TL
Sbjct: 307 FCNGIENYSRHFSGRAPGEPPPCLIDYFPRNMLVLVDESHQTVSQIGAMYRGDRSRKETL 366

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL+F E+  +    + VSATP  +EL++ +G++VEQIIRPTGL DP
Sbjct: 367 VNYGFRLPSALDNRPLKFTEFEEMVQQAVFVSATPAEYELQKSKGVVVEQIIRPTGLTDP 426

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R AR QV+D+ +E+     Q  R+L T LTKRMAEDLTEY  +  ++VRY+HS++ 
Sbjct: 427 EVEVRPARNQVDDLLEEVRKRVAQKERVLATTLTKRMAEDLTEYFTDVGVKVRYLHSDIG 486

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER  IIRDLR G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 487 AIERTAIIRDLRKGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHVSLIQTIGR 546

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN++  VI+Y+D+IT S++ AI+ET RRRE Q  +N++H I P+SVK  I++ +    
Sbjct: 547 AARNLHGHVIMYSDSITDSMKRAIEETRRRREVQRAYNQEHGITPRSVKSAILD-LSLQY 605

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             D     ++ DA    L  K+ K  ++   K M  AAD + FE+AA+ RD I  LK
Sbjct: 606 DADPTALPLAADAANDVLDTKEIKRLIEEFTKDMQHAADEMQFEKAAQFRDRIVLLK 662


>gi|75910876|ref|YP_325172.1| excinuclease ABC subunit B [Anabaena variabilis ATCC 29413]
 gi|75704601|gb|ABA24277.1| Excinuclease ABC subunit B [Anabaena variabilis ATCC 29413]
          Length = 665

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/666 (52%), Positives = 458/666 (68%), Gaps = 4/666 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F +Q  + P+GDQP+AIAQL+  I    + Q LLG TG+GKTF++A VIE + RP +
Sbjct: 1   MTEFGLQAPFSPTGDQPSAIAQLVASIEGGNRYQTLLGATGTGKTFSIAAVIEKIGRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK ++IN++ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPNNAVEYFVSYYDYYQPEAYIPVTDTYIEKTAAINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  + L+IG  V Q+E+L  L   QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPAEYLKAAIPLQIGMEVNQREILRDLASVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ I +++ +
Sbjct: 181 SRNDVEMGRGRFRVRGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEIINSLQAV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP   L  A + I  ELK R  ELE+ G+L+EAQR++QR  YDLEML   G
Sbjct: 240 NIYPARHFVTPEERLEVACEDIAYELKQRKAELEEAGKLVEAQRIDQRTRYDLEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  GEPP +L +Y P+D LL +DESHVT+PQI GMY GD  RK  L
Sbjct: 300 YCNGVENYSRHLAGRQAGEPPESLIDYFPKDWLLVIDESHVTVPQIRGMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+ EE+       I VSATPG+WELE  +  IVEQ+IRPTG++DP
Sbjct: 360 IEHGFRLPSAADNRPLKAEEFWQKVNQCIFVSATPGNWELEISENRIVEQVIRPTGVIDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    Q++D+  EI        R+L+T LTKRMAEDLTEYL E  ++VRY+HSE+ 
Sbjct: 420 EISVRPTEGQIDDLLGEIKDRIDLHERVLITTLTKRMAEDLTEYLQEHGVKVRYLHSEIN 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           +++RIEI++DLR G FDVLVG+NLLREGLD+PE  LVAI+DADKEGFLR++ SLIQTIGR
Sbjct: 480 SIQRIEILQDLRQGSFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR++  + ILYAD +T S+  A++ET RRR  Q+ +NK H I PQ + +K    I   L
Sbjct: 540 AARHIRGQAILYADNMTDSMIKAVEETDRRRNIQVAYNKLHGITPQPIVKKSSNAILSFL 599

Query: 738 LEDA---ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  AT    ++     L  ++    +  L  QM  A+  L FEEAA++RD IK+L+
Sbjct: 600 EVSRRLNATDLKVVEEHIDELPLEEIPNLIDKLEAQMKEASKKLEFEEAAKLRDRIKQLR 659

Query: 795 SSPYFQ 800
                +
Sbjct: 660 DKLVGR 665


>gi|329766890|ref|ZP_08258418.1| UvrABC system protein B [Gemella haemolysans M341]
 gi|328837615|gb|EGF87240.1| UvrABC system protein B [Gemella haemolysans M341]
          Length = 666

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/659 (53%), Positives = 464/659 (70%), Gaps = 2/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q+ Y P GDQ  AIA+L +G+++ EK Q LLG TG+GKTFT+A +++ + +P +V+A
Sbjct: 10  FDLQSKYEPKGDQINAIAELTEGLNNGEKYQTLLGATGTGKTFTIANIVKNVGKPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY+E K FFP+N VEYFVSYYDY+QPEAYVP TDTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYNELKEFFPNNRVEYFVSYYDYFQPEAYVPSTDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL +R+D I+VSSVSCIYG+GS E YS +++ L++GD + + ++L  L+  QY R 
Sbjct: 130 SATSSLFDRDDVIIVSSVSCIYGLGSPEEYSSLVLSLRVGDEISRNKMLEKLISIQYMRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD IEIFP+   + + RV MFG++I+ I E  PLTG+ +  +E I IY
Sbjct: 190 DIEFTRGTFRVRGDVIEIFPASRSENSVRVEMFGDEIDRIREINPLTGEVLSELEHIAIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+V        A+K I+ EL+ RL  L  E +LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 250 PASHFVAGDEKTKEAIKRIRAELEERLKVLNMENKLLEAQRLEQRTNYDLEMMEEMGFCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R PG  P TL +Y P+D LL VDESHVT+PQ+ GM+ GD  RK  L +Y
Sbjct: 310 GIENYSLHLTLREPGSTPYTLLDYFPDDWLLVVDESHVTLPQVRGMFNGDRARKQVLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL FEE+       I VSATPG +ELE    I  EQIIRPTGL+DP ++
Sbjct: 370 GFRLPTALDNRPLNFEEFEKKLNQAIFVSATPGDFELEHSTKIT-EQIIRPTGLLDPIID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV D+  E      +G R+L+T LTK+MAE LT YL E  ++V Y+HS++KTLE
Sbjct: 429 IRPVSDQVFDITKEAEKIIAKGERVLITTLTKKMAESLTAYLKENGLKVEYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLGKFD+L+GINLLREGLDIPE  LVAILDADKEGFLR   +L+QTIGRAAR
Sbjct: 489 RTEIIRNLRLGKFDILIGINLLREGLDIPEVSLVAILDADKEGFLRGDKALLQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S++ AIDET RRRE Q+ +N++H I PQ++ + I + I       
Sbjct: 549 NANGRVIMYADNITRSMRKAIDETNRRREIQMAYNEEHGIIPQTIIKDIRDSISAKKEVV 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
                + ++ +  +++    + HL  L +QM  AA+   FE+AA++RD I  LK     
Sbjct: 609 KDDEILELE-ESANINDDNIEEHLAELEQQMFAAAEKFEFEQAAKLRDTIAELKEKYKL 666


>gi|89092647|ref|ZP_01165600.1| excinuclease ABC subunit B [Oceanospirillum sp. MED92]
 gi|89083159|gb|EAR62378.1| excinuclease ABC subunit B [Oceanospirillum sp. MED92]
          Length = 673

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/670 (55%), Positives = 484/670 (72%), Gaps = 11/670 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA+L++GI S    Q LLGVTGSGKTFT+A VI   QRP I+MA
Sbjct: 5   FKVHSKFTPAGDQPNAIAELVEGIESGLAAQTLLGVTGSGKTFTVANVIAQAQRPTIIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++MR 
Sbjct: 65  HNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D I+V++VS IYG+G  +SY  M++ +  GD ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLEREDAIIVATVSAIYGLGDPKSYLGMMLHVDRGDIIDQRAVLRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RGT+RV GD I+IFP+  E  A R+ +F  +IEEIS F PLTG+ +R V    IY
Sbjct: 185 DVELHRGTYRVRGDVIDIFPAESEKEAVRLELFDEEIEEISYFDPLTGEVLRRVPRATIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR TL  A+  IK+EL+ RL +L +  +L+EAQRLEQR  YD+EM+   G C 
Sbjct: 245 PKSHYVTPRETLLAAVDKIKDELRGRLEQLRENNKLVEAQRLEQRTLYDMEMIMELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR+ G+ PPTLF+Y+P++SLL +DESHVT+PQI  MYRGD  RK TL E+
Sbjct: 305 GIENYSRYLSGRDSGQAPPTLFDYLPDNSLLVIDESHVTVPQIGAMYRGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP++FEEW    P  I VSATP  +E    Q  +VEQ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPMKFEEWERESPQMIFVSATPSKYEAAN-QQQVVEQVVRPTGLIDPIVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A TQV+D+  EI     +  R+++TVLTKRMAEDLTE+L E  +RVRY+HS++ T+E
Sbjct: 424 VRPASTQVDDLLSEIQKIVAKQERVVVTVLTKRMAEDLTEFLDEHGVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR+G+FDVLVGINLLREG+D+PE  LV ILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 484 RVEIIRDLRIGEFDVLVGINLLREGIDMPEVSLVTILDADKEGFLRSDTSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---- 736
           NVN K ILYAD IT S+Q A+DET RRR+KQ+  N++H I P+ +K+ + ++++      
Sbjct: 544 NVNGKAILYADRITGSMQRAMDETDRRRQKQIAFNEEHGIVPKGIKKSVADIMEGASTVP 603

Query: 737 ------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                   +  A            +S K+    +  L  +M+ AA NL FE AA+ RDE+
Sbjct: 604 GRKASRTAKKVAEKAGDYQVDPAQMSAKELSKAMTKLEDKMYEAAKNLEFELAAKYRDEL 663

Query: 791 KRLKSSPYFQ 800
           + LK   + +
Sbjct: 664 QTLKQHSFIE 673


>gi|329769751|ref|ZP_08261152.1| UvrABC system protein B [Gemella sanguinis M325]
 gi|328838113|gb|EGF87731.1| UvrABC system protein B [Gemella sanguinis M325]
          Length = 665

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/659 (53%), Positives = 461/659 (69%), Gaps = 3/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q+ + P GDQ  AI +L +GI++ EK Q LLG TG+GKTFT+A +I+ + +P +V+A
Sbjct: 10  FDLQSKFEPKGDQVRAINELTEGINNGEKYQTLLGATGTGKTFTIANIIKNVGKPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY+E K FFP+N VEYFVSYYDY+QPEAYVP TDTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYNELKEFFPNNRVEYFVSYYDYFQPEAYVPSTDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL +R+D I+VSSVSCIYG+GS E YS +++ L++GD + + ++LS L+  QY R 
Sbjct: 130 SATSSLFDRDDVIIVSSVSCIYGLGSPEEYSSLVLSLRVGDEISRNKILSKLIDIQYMRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD IEIFP+   + + R+ MFG++I+ I E   LTG+ +  +E I IY
Sbjct: 190 DIEFTRGTFRVRGDVIEIFPASRSENSVRIEMFGDEIDRIREINSLTGEVLSELEHIAIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+V        A+K I+ EL+ RL     E +LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 250 PASHFVAGEEKTKEAIKRIRAELEDRLKVFNMENKLLEAQRLEQRTNYDLEMMEEMGFCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R PG  P TL +Y P+D LL VDESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSLHLTLREPGSTPYTLLDYFPKDWLLVVDESHVTLPQVRGMYNGDRARKQVLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL ++E+       I VSATPG +ELE     I EQIIRPTGL+DP ++
Sbjct: 370 GFRLPTALDNRPLNYQEFENKLNQAIFVSATPGDYELEHS-SKITEQIIRPTGLLDPVID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV D+  E     ++G R+L+T LTK+MAE LT YL E  ++V Y+HS++KTLE
Sbjct: 429 VRPVSDQVFDITKEAEKIIEKGERVLITTLTKKMAESLTAYLKENGLKVEYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLGKFD+LVGINLLREGLDIPE  LVAILDADKEGFLR   +L+QTIGRAAR
Sbjct: 489 RTEIIRNLRLGKFDILVGINLLREGLDIPEVSLVAILDADKEGFLRGDKALLQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +T+S++ AIDET RRRE Q+ +N++H I PQ++ + I + I     ++
Sbjct: 549 NANGRVIMYADNMTRSMKKAIDETNRRREIQMAYNEEHGITPQTIIKDIRDSI--SAKKE 606

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
                     +  +++    + HL  L ++M  AA+   FE AA++RD I  LK     
Sbjct: 607 VIEDETLELEEVSNITDDNIEEHLAELEQEMFSAAEKFEFERAAKLRDTIAELKEKYKL 665


>gi|206901994|ref|YP_002250600.1| excinuclease ABC, B subunit [Dictyoglomus thermophilum H-6-12]
 gi|206741097|gb|ACI20155.1| excinuclease ABC, B subunit [Dictyoglomus thermophilum H-6-12]
          Length = 662

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/653 (54%), Positives = 464/653 (71%), Gaps = 4/653 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F + +++ P GDQP AI +L +G+    + Q L+GVTGSGKTFTMA +I  +Q+P +
Sbjct: 1   MSGFILVSEFKPCGDQPQAIEKLTEGVKRGLRYQTLIGVTGSGKTFTMANIIANVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P+TDTYIEK++ IN++IDR
Sbjct: 61  VIAPNKTLAAQLYSEFKEFFPYNAVEYFVSYYDYYQPEAYIPQTDTYIEKDADINDRIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHS T SLL R D IVV+SVSCIYG+GS   Y++MI+ +K G+ + +  LL  L+K QY
Sbjct: 121 LRHSTTSSLLSRRDVIVVASVSCIYGLGSPTDYAEMILMVKRGEDLPRDTLLRKLIKLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D    RG FRV GD +E+FP   E  A R+  +G+ IE ISE  PL G+++ +   +
Sbjct: 181 ERNDYEFTRGKFRVRGDVVEVFPIGGE-TAIRIEYWGDTIERISEIDPLNGKRVVDFNEV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HY+ P   +  A++ IK EL+ RL EL  +G+ LEA+RLE R  YD+E+L   G
Sbjct: 240 FIYPATHYIAPTEKMERAIESIKRELEERLEELRSQGKFLEAKRLEARTLYDIELLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSR+  GR PGEPP TL +Y P+D L+F+DESH+TIPQ+  MY GD  RK  L
Sbjct: 300 YCKGIENYSRHFDGRKPGEPPYTLLDYFPDDFLVFIDESHLTIPQLRAMYHGDKSRKDNL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL FEE+    P  I VSATP  +EL   +  +VEQ+IRPTGL+DP
Sbjct: 360 VEYGFRLPSAYDNRPLTFEEFWERVPQVIFVSATPAEFELSVSEQ-VVEQLIRPTGLLDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+     Q++ +  EI     +G R+L+T LTKR AEDL EYL    I V Y+HSE++
Sbjct: 419 EIEVHPTEGQIDHLISEIKKVVARGERVLVTTLTKRTAEDLVEYLSNLGINVTYLHSEIE 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER  I++ LRLGKFDVLVGINLLREGLD+PE  LVAILDAD+EGFLRS+ SLIQ +GR
Sbjct: 479 TLERTGILQSLRLGKFDVLVGINLLREGLDLPEVSLVAILDADREGFLRSERSLIQVMGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN KVI+YAD IT S++ AI+ET RRR  Q+E+N+ H I P+S+K+ + EV D   
Sbjct: 539 AARNVNGKVIMYADVITDSMRRAIEETQRRRRIQMEYNQAHGITPKSIKKPVKEVFD--F 596

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           +E  +   +   A    LS  + +  +K L K+M+ AA  L+FE+AA +RD+I
Sbjct: 597 VEAVSEKKVDYKAVSKKLSIDEIEEVIKQLEKEMYEAAAELDFEKAAYLRDQI 649


>gi|58337009|ref|YP_193594.1| excinuclease ABC subunit B [Lactobacillus acidophilus NCFM]
 gi|227903571|ref|ZP_04021376.1| excinuclease ABC subunit B [Lactobacillus acidophilus ATCC 4796]
 gi|81311493|sp|Q5FL61|UVRB_LACAC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|58254326|gb|AAV42563.1| excinuclease ABC (subunit B) [Lactobacillus acidophilus NCFM]
 gi|227868458|gb|EEJ75879.1| excinuclease ABC subunit B [Lactobacillus acidophilus ATCC 4796]
          Length = 683

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/667 (51%), Positives = 468/667 (70%), Gaps = 5/667 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
              KD   F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  +
Sbjct: 3   KRQKD-RKFELVSKFKPAGDQQQAINKLTAGFEKGYKEQILEGATGTGKTFTMANIIAKL 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            +P +V+  NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN
Sbjct: 62  NKPTLVITHNKTLVGQLYGEFKGFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAIN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           ++ID++RH+ T +L+ERND IVV+SVSCIYG+G  + Y++ ++ +  G   E+  LL  L
Sbjct: 122 DEIDQLRHATTSALMERNDVIVVASVSCIYGLGDPKEYARSVLMIHEGQEYERNTLLRDL 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QY R DI   RG FRV GD +EIFP+   + A+RV  FG++I+ I E   LTG+ I 
Sbjct: 182 VNLQYDRNDIDFQRGRFRVRGDVVEIFPAGNSNHAYRVEFFGDEIDRIVEIDSLTGEVIG 241

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
             E+I ++  +H++T    L  A+K I +E+K+++ + E EG+LLEA+R++QR TYD+EM
Sbjct: 242 ERESISLFPATHFMTNDEQLRRALKAISKEMKVQVKKFEGEGKLLEAERIKQRTTYDMEM 301

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           +   G    IENYSR++ GR  GEPP TL ++ P+D L+ +DESH T+P+I  MY GD +
Sbjct: 302 MGEVGYTNGIENYSRHMEGRKVGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDRN 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL +YGFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPT
Sbjct: 362 RKKTLIDYGFRLPSALDNRPLKLAEFEKHVNQILYVSATPGDYELERT-DHKVEQIIRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP +E+R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+
Sbjct: 421 GLLDPKIEVRPIEGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYL 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++KTLER++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+
Sbjct: 481 HSDIKTLERMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLV 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QT+GRAARN N +VI+YADTIT S++ AI+ T RRR+ Q E NK+H I P+++ + + +V
Sbjct: 541 QTMGRAARNANGEVIMYADTITDSMKAAIEATQRRRKLQEEFNKEHGIVPKTIIKPVHDV 600

Query: 733 I---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           I    P        T+   D     L+ K+ K  +K+L++QM  AA  L+FEEAA +RD 
Sbjct: 601 ISITKPSEDSKKEKTDSFADLNFDELTAKQKKTMIKNLQEQMKEAAKKLDFEEAANLRDA 660

Query: 790 IKRLKSS 796
           I  L+SS
Sbjct: 661 IMELQSS 667


>gi|310644265|ref|YP_003949024.1| excinuclease abc, b subunit [Paenibacillus polymyxa SC2]
 gi|309249216|gb|ADO58783.1| Excinuclease ABC, B subunit [Paenibacillus polymyxa SC2]
          Length = 663

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/655 (54%), Positives = 483/655 (73%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+++ P GDQP AI +L++GI   +K Q LLG TG+GKT+T+A+ I  + RP +V+A
Sbjct: 11  FEIQSEFQPQGDQPQAIFELVEGIAEGKKHQTLLGATGTGKTYTIAQTIAKLNRPTLVIA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP+N+V+YFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID++RH
Sbjct: 71  HNKTLAAQLASEFKEFFPNNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSSINEEIDKLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+GS + YS +++ L++G    + ++LS LV  QY+R 
Sbjct: 131 SATSSLFERRDVIIVASVSCIYGLGSPKEYSSLLLSLRVGMEKPRNQILSRLVDIQYQRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +RGTFRV GD +EIFP+   + A RV +FG++IE I+E   LTG+ I   E I I+
Sbjct: 191 DINFVRGTFRVRGDVVEIFPASHGENAIRVELFGDEIERITEINVLTGELIGEREHIAIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT   T+  A+  I+ EL+ RL EL+++G+LLEAQRLEQR  YD+EM+   G C 
Sbjct: 251 PASHFVTHEDTMRVALVNIERELEERLAELKEQGKLLEAQRLEQRTRYDIEMMREVGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS  LT R  G  P TL +Y P+D L+ +DESHVT+PQI  MY GD  RK  L E+
Sbjct: 311 GVENYSGPLTFRERGATPYTLLDYFPDDMLIVIDESHVTLPQIRAMYNGDQARKNVLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       I VSATPG +E+E+C   +V+QIIRPTGL+DP +E
Sbjct: 371 GFRLPSALDNRPLKFEEFEDKVNQIIYVSATPGPYEMEKC-DTMVQQIIRPTGLLDPIIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R ++ Q++D+ +EI    ++  R+L+T LTK+MAEDLT+YL E  I+VRYMHSE+KTLE
Sbjct: 430 VRPSKGQIDDLINEIRQRIEREERVLVTTLTKKMAEDLTDYLKEVGIKVRYMHSEIKTLE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ I+RDLRLG FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RMAILRDLRLGTFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+Y D IT S+  AI ET RRR  Q+++N++H I PQ++++KI +VI+     +
Sbjct: 550 NSDGRVIMYGDKITDSMDKAIKETERRRAIQIQYNEEHGITPQTIRKKIRDVIEATKTAE 609

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +    +  +  +  LSKK+ ++ ++ L  +M  AA NL FE AA +RD +  L++
Sbjct: 610 SKNDYLPNETGK--LSKKERQSLIQRLEAEMKDAAKNLQFERAAELRDALLELRA 662


>gi|227501808|ref|ZP_03931857.1| excision endonuclease subunit B [Corynebacterium accolens ATCC
           49725]
 gi|227077833|gb|EEI15796.1| excision endonuclease subunit B [Corynebacterium accolens ATCC
           49725]
          Length = 697

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/696 (51%), Positives = 484/696 (69%), Gaps = 10/696 (1%)

Query: 117 LKNGKIWTPHRSWSI-NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
                   P+    +     +    FQ+ +DY P+GDQPAAI +L + ++  E+  +L+G
Sbjct: 3   FAAEHPLIPNSEHRVVGEVERTPGKFQVVSDYEPAGDQPAAIKELDERLNRDERDVVLMG 62

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GK+ T A +IE  QRP +VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPE
Sbjct: 63  ATGTGKSATAAWLIEKQQRPTLVMAPNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPE 122

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AY+ +TDTYIEK+SSINE ++R+RHSAT  LL R D +VVSSVSCIYG+G+ +SY    V
Sbjct: 123 AYIAQTDTYIEKDSSINEDVERLRHSATSGLLSRRDVVVVSSVSCIYGLGTPQSYLDRSV 182

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            + + + +++   L  LV  QY+R D+G  RGTFRV GD+++I P++ E+ A R+  FG+
Sbjct: 183 IIAVDEELDRDRFLRLLVDIQYERNDVGFTRGTFRVKGDTVDIIPAY-EERAVRIEFFGD 241

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ +   +P+TG  I  V+ ++I+  +HYV     +  A+  IKEEL  RL +LE  G+
Sbjct: 242 DIDSLYYIHPVTGDVIEQVDEVRIFPATHYVAGPERMEKAVADIKEELAERLEDLENRGK 301

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRL  R  YDLEM+E  G C  IENYSR++ GR  G  P TL +Y PED L  +DE
Sbjct: 302 LLEAQRLRMRTEYDLEMIEQVGFCSGIENYSRHVDGRPAGSAPATLLDYFPEDFLTIIDE 361

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVT+PQI GMY GD  RK  L E+GFRLPS +DNRPL F+E+      T+ +SATPG +
Sbjct: 362 SHVTVPQIGGMYEGDMSRKRNLVEFGFRLPSAVDNRPLTFDEFEERVGQTVYMSATPGDF 421

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           E+    G  VEQ+IRPTGLVDP V ++  + Q++D+ DE+        R+L+T LTKRMA
Sbjct: 422 EMTSSGGEFVEQVIRPTGLVDPKVTVKPTKGQIDDLIDEVRGRIASKERVLVTTLTKRMA 481

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL E+ I+VRY+HS++ TL+R+E++R LR G+FDVLVGINLLREGLD+PE  LVA
Sbjct: 482 EDLTDYLLEQGIKVRYLHSDIDTLQRVELLRQLRQGEFDVLVGINLLREGLDLPEVSLVA 541

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS TSLIQTIGRAARNV+ +VI+YAD IT S+Q AIDET RRREKQ+ +N
Sbjct: 542 ILDADKEGFLRSTTSLIQTIGRAARNVSGEVIMYADKITDSMQEAIDETERRREKQIAYN 601

Query: 716 KKHNINPQSVKEKIMEVIDPILL---EDAATTNISIDAQQL---SLSKKKGKAHLKSLRK 769
           K+H ++PQ +++KI +++D +     E+AA ++ S   ++L   S++  + +A +  L+ 
Sbjct: 602 KEHGVDPQPLRKKIADILDQVYENNGEEAAESDPSAVVEKLDVSSMATDEVEALINDLQA 661

Query: 770 QMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           QM  AA  L FE A R+RDEI  LK     +GL ++
Sbjct: 662 QMGAAARELKFELAGRLRDEIADLKKE--LRGLKEA 695


>gi|71276421|ref|ZP_00652697.1| Excinuclease ABC, B subunit [Xylella fastidiosa Dixon]
 gi|71900500|ref|ZP_00682630.1| Excinuclease ABC, B subunit [Xylella fastidiosa Ann-1]
 gi|170730969|ref|YP_001776402.1| excinuclease ABC subunit B [Xylella fastidiosa M12]
 gi|238687942|sp|B0U4J3|UVRB_XYLFM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|71162737|gb|EAO12463.1| Excinuclease ABC, B subunit [Xylella fastidiosa Dixon]
 gi|71729740|gb|EAO31841.1| Excinuclease ABC, B subunit [Xylella fastidiosa Ann-1]
 gi|167965762|gb|ACA12772.1| excinuclease ABC subunit B [Xylella fastidiosa M12]
          Length = 669

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/663 (55%), Positives = 493/663 (74%), Gaps = 6/663 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ+ + Y PSGDQPAA+ +L+   H+    Q+LLGVTGSGKT+T+A V+E +Q+P +VM
Sbjct: 4   LFQLVSSYSPSGDQPAAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR
Sbjct: 64  APNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +AT++LL R+D +VV++VS IYG+G+ E Y  + + L +G+ +EQ++L+  L + QY R
Sbjct: 124 LAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLILSLGEHIEQRQLIRHLTELQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++ ++RG+FRV G+ +++FP+  E  A R+ +F  +IE +S F PLTGQ +R ++   +
Sbjct: 184 NELDLVRGSFRVRGEVVDVFPAESEMEALRIELFDGEIESLSLFDPLTGQTVRKLQRFSV 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HY T R    +A+  IK+ELK  L  L    +L+EAQRL QR  +DLEM+   G C
Sbjct: 244 YPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  M++GD  RK TL E
Sbjct: 304 NGIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEEW    P +I VSATPGS+E  +  G ++E ++RPTGL+DP +
Sbjct: 364 FGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYEFRESAGEVIELLVRPTGLIDPEI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR   TQV+D+  +IN   + G R+L+T LTKRMAE+LTEYL E+ IR+RY+HSE+ T+
Sbjct: 424 EIRPVATQVDDLISQINACIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEIDTV 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS +SLIQTIGRAA
Sbjct: 484 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP---- 735
           R+V  + ILYAD +T+S++ AIDET RRR+KQ E+N ++ I P+SV   I ++++     
Sbjct: 544 RSVRGRAILYADKVTRSMRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDG 603

Query: 736 --ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             +  +        + A   +L++ +  A +K L +QM+  A +L FE+AARIRD+I+RL
Sbjct: 604 VEVKSKGKGRRVDEVPADYGALNQAEIAAQMKMLEQQMYQHARDLEFEDAARIRDQIQRL 663

Query: 794 KSS 796
           + +
Sbjct: 664 REA 666


>gi|226360119|ref|YP_002777897.1| excinuclease ABC subunit B [Rhodococcus opacus B4]
 gi|226238604|dbj|BAH48952.1| UvrABC system protein B [Rhodococcus opacus B4]
          Length = 720

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/718 (50%), Positives = 484/718 (67%), Gaps = 32/718 (4%)

Query: 117 LKNGKIWTPHRSWSI-NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
             +      H  +       +    F++ +D+ P+GDQP AIA L + I++ EK  +LLG
Sbjct: 3   FASEHPVVAHSEFRPIGEIERSEARFEVVSDHKPAGDQPTAIADLERRINAGEKDVVLLG 62

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GK+ T A +IE +QRP +VMAPNK LAAQL +E ++  P+N+VEYFVSYYDYYQPE
Sbjct: 63  ATGTGKSATTAWLIEKVQRPTLVMAPNKTLAAQLANELRDMLPNNSVEYFVSYYDYYQPE 122

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AY+ +TDTYIEK+SSIN+ ++R+RHSAT SLL R D +VV+SVSCIYG+G+ +SY    V
Sbjct: 123 AYIAQTDTYIEKDSSINDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSV 182

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
           QL++G  V +  LL  LV  QY R D+   RG+FRV GD++EI PS+ E++A R+  FG+
Sbjct: 183 QLEVGVEVPRDALLRLLVDVQYTRNDLAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGD 241

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +IE +   +PLTG  +R V++++I+  +HYV     +  A+K I+ EL+ RL +LE +G+
Sbjct: 242 EIEALYYLHPLTGDVVRKVDSVRIFPATHYVAGPERMERAVKDIEAELEERLADLENKGK 301

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRL  R  YDLEM++  G C  IENYSR++ GR PG  P TL +Y PED LL +DE
Sbjct: 302 LLEAQRLRMRTQYDLEMIKQVGFCSGIENYSRHIDGRGPGTAPATLIDYFPEDFLLVIDE 361

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVT+PQI  MY GD  RK  L E+GFRLPS  DNRPL +EE+      T+ +SATPG +
Sbjct: 362 SHVTVPQIGAMYEGDMSRKRNLVEFGFRLPSATDNRPLTWEEFTQRIGQTVYLSATPGKY 421

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           EL Q  G  VEQ+IRPTGLVDP V ++  + Q++D+  EI   A +  R+L+T LTK+MA
Sbjct: 422 ELGQAGGEFVEQVIRPTGLVDPEVVVKPTKGQIDDLVHEIRERADRDERVLVTTLTKKMA 481

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL E  IRVRY+HS++ TL R+E++R LRLG++DVLVGINLLREGLD+PE  LVA
Sbjct: 482 EDLTDYLLELGIRVRYLHSDIDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVA 541

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS TSLIQTIGRAARNV+ +V +YAD IT S+Q AI+ET RRREKQ+ +N
Sbjct: 542 ILDADKEGFLRSSTSLIQTIGRAARNVSGQVHMYADKITDSMQHAIEETERRREKQIAYN 601

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTN----------------------------IS 747
           +K  ++PQ +++KI +++D +  E   T +                            + 
Sbjct: 602 EKMGVDPQPLRKKIADILDQVYEEAEDTASGVDVGGSGRNATRGRRAQGEAGRSVSAGVY 661

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
                 S+ + +    +K L  QM  AA +L FE A R+RDEI  LK     +G+D +
Sbjct: 662 EGRDTKSMPRAELADLVKELTDQMMNAARDLQFELAGRLRDEIADLKKE--LRGMDAA 717


>gi|71898922|ref|ZP_00681089.1| Excinuclease ABC, B subunit [Xylella fastidiosa Ann-1]
 gi|71731334|gb|EAO33398.1| Excinuclease ABC, B subunit [Xylella fastidiosa Ann-1]
          Length = 669

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/663 (55%), Positives = 494/663 (74%), Gaps = 6/663 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
           FFQ+ + Y PSGDQPAA+ +L+   H+    Q+LLGVTGSGKT+T+A V+E +Q+P +VM
Sbjct: 4   FFQLVSSYSPSGDQPAAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR
Sbjct: 64  APNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +AT++LL R+D +VV++VS IYG+G+ E Y  + + L +G+ +EQ++L+  L + QY R
Sbjct: 124 LAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLILSLGEHIEQRQLIRHLTELQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++ ++RG+FRV G+ +++FP+  E  A R+ +F  +IE +S F PLTGQ +R ++   +
Sbjct: 184 NELDLVRGSFRVRGEVVDVFPAESEIEALRIELFDGEIESLSLFDPLTGQTVRKLQRFSV 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HY T R    +A+  IK+ELK  L  L    +L+EAQRL QR  +DLEM+   G C
Sbjct: 244 YPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  M++GD  RK TL E
Sbjct: 304 NGIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEEW    P +I VSATPGS+E  +  G ++E ++RPTGL+DP +
Sbjct: 364 FGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYEFRESAGEVIELLVRPTGLIDPEI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR   TQV+D+  +IN   + G R+L+T LTKRMAE+LTEYL E+ IR+RY+HSE+ T+
Sbjct: 424 EIRPVATQVDDLISQINACIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEIDTV 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS +SLIQTIGRAA
Sbjct: 484 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP---- 735
           R+V  + ILYAD +T+S++ AIDET RRR+KQ E+N ++ I P+SV   I ++++     
Sbjct: 544 RSVRGRAILYADKVTRSMRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDG 603

Query: 736 --ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             +  +        + A   +L++ +  A +K L +QM+  A +L FE+AARIRD+I+RL
Sbjct: 604 VEVKSKGKGRRVDEVPADYGALNQAEIAAQMKVLEQQMYQHARDLEFEDAARIRDQIQRL 663

Query: 794 KSS 796
           + +
Sbjct: 664 REA 666


>gi|323141859|ref|ZP_08076720.1| excinuclease ABC, B subunit [Phascolarctobacterium sp. YIT 12067]
 gi|322413606|gb|EFY04464.1| excinuclease ABC, B subunit [Phascolarctobacterium sp. YIT 12067]
          Length = 672

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/658 (54%), Positives = 470/658 (71%), Gaps = 2/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q  + P+GDQP AIA L +G+    + Q+LLG TG+GKT+T+A+VI  +++P +V+A
Sbjct: 5   FKIQAPFEPAGDQPQAIANLAEGVEQGLRTQVLLGATGTGKTYTIAQVINKVRKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SE K FFP NAVEYFVSYYDYYQPEAY+P++DTYIEK++SIN++ID++RH
Sbjct: 65  HNKTLAAQLASELKAFFPENAVEYFVSYYDYYQPEAYIPQSDTYIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G+ + Y  M++ L++G  ++++++L  LV+ QY R 
Sbjct: 125 SATSALFERKDVIIVASVSCIYGLGAPQEYYDMVLSLRLGQIIDRQKILHKLVEIQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD IE+ P+   + A R+ MF ++++ I EF  LTG+ +     + I+
Sbjct: 185 DIDFKRGTFRVRGDVIEVIPAAYGEKAVRIEMFDDEVDRIVEFDVLTGEILAQRNHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT R  L  AM  I+EEL  RL EL K GRLLEAQRLEQR  YDLEM++  G C 
Sbjct: 245 PASHYVTSRENLERAMNDIREELDERLDELNKHGRLLEAQRLEQRTNYDLEMMQEMGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  GEPP TL  Y P+D LL VDESHVT+PQI  MY GD  RK  L E+
Sbjct: 305 GIENYSRHLAGRKAGEPPFTLVNYFPKDFLLVVDESHVTLPQIRAMYAGDRSRKEMLVEH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F+E+       I VSATP  +ELEQ    +VEQIIRPTGL+DP +E
Sbjct: 365 GFRLPSAYDNRPLTFDEFQAQIKQAIYVSATPAKYELEQADN-VVEQIIRPTGLLDPQIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EIN  A  G R+L+T LTKRMAEDLTEYL +  +RVRY+HSE+ T+E
Sbjct: 424 IRPIKGQIDDLLGEINKVAAAGERVLVTTLTKRMAEDLTEYLKQAGVRVRYLHSEIATIE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EII  LR GKFDVLVGINLLREGLD+PE  L+AILDADKEGFLRS T++IQTIGRAAR
Sbjct: 484 RAEIIDSLRAGKFDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSDTAMIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+YAD IT S+Q AIDET RRREKQ  +N++H+I P+++ ++  ++I    + D
Sbjct: 544 NAHGRVIMYADRITDSMQRAIDETNRRREKQQAYNEEHHITPKTIYKEQRQLIKLTKVAD 603

Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                    +++L   S K+     + L ++M   A  L+FE AA +RD++  +K   
Sbjct: 604 TEEATSYGSSKKLKQKSTKELNTLARELERRMQETAKALDFEAAAELRDQLIIVKGQL 661


>gi|88810664|ref|ZP_01125921.1| Excinuclease ABC, B subunit [Nitrococcus mobilis Nb-231]
 gi|88792294|gb|EAR23404.1| Excinuclease ABC, B subunit [Nitrococcus mobilis Nb-231]
          Length = 676

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/661 (56%), Positives = 488/661 (73%), Gaps = 6/661 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++++ Y P+GDQP AI  L + +    + Q LLGVTGSGKTFTMA VI  +QRPA+V
Sbjct: 3   RRFELRSRYQPAGDQPGAIEALCQSLVLGNQHQTLLGVTGSGKTFTMANVIARLQRPALV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY EF+ FFP NAVEYFVSYYDYYQPEAYVP +DTYI K++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEFREFFPTNAVEYFVSYYDYYQPEAYVPASDTYIAKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++++ER D I+V+SVS IYG+G  ++Y  M++ L   D ++Q+ +L  L   QYK
Sbjct: 123 RLSATKAIIERRDTIIVASVSAIYGLGDPQAYLSMVLHLVRADRMDQRFILRRLADLQYK 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D  + RGT+RV GD I+IFP+  E+ A R+ +F ++IE +S F PLTG+ +R V  + 
Sbjct: 183 RNDAELQRGTYRVRGDVIDIFPAESEEQAVRIELFDDEIESLSYFDPLTGEVMRRVPRLT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR TL  A+  IK+ELK RL EL + G+ LEA+RLEQR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRETLLDAIDKIKQELKARLEELRQAGKPLEAERLEQRTRFDLEMMAELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR  GEPPP L +Y+P DSLLFVDESHVT+PQ+ GM+RGD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRAAGEPPPCLLDYLPVDSLLFVDESHVTVPQLGGMFRGDRSRKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPLRF+E+  L P  I VSATPGS+E  +C  ++VEQ++RPTGLVDP 
Sbjct: 363 EYGFRLPSALDNRPLRFDEFERLAPQCIHVSATPGSYE-ARCSRVVVEQVVRPTGLVDPA 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V +R A +QV+++  EI   A+ G R+L+T LTKRMAEDLT+YL E  +RVRY+HS++ T
Sbjct: 422 VVVRPAASQVDELLSEIRERAEIGERVLVTTLTKRMAEDLTDYLAEHGVRVRYLHSDIDT 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFD LVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 482 VERVEIIRDLRLGKFDALVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN++   ILYAD +T S++ AIDET RRR KQL  N +H I P+ +++ + ++++    
Sbjct: 542 ARNIHGTAILYADAMTDSMRRAIDETERRRAKQLAFNVRHGITPRGIEKAVADIMERESG 601

Query: 739 EDAATTN-----ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
               +         + +  + LS  +    +++L ++MH  A NL FEEAA++RDEIKR+
Sbjct: 602 GAPDSPEHFARVAEVASPYVKLSPTQAVKRIQALEQRMHKHARNLEFEEAAQLRDEIKRI 661

Query: 794 K 794
           +
Sbjct: 662 Q 662


>gi|227495385|ref|ZP_03925701.1| excision endonuclease subunit B [Actinomyces coleocanis DSM 15436]
 gi|226830932|gb|EEH63315.1| excision endonuclease subunit B [Actinomyces coleocanis DSM 15436]
          Length = 700

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/681 (53%), Positives = 481/681 (70%), Gaps = 21/681 (3%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +  T F++ ++Y PSGDQP AI +L + I++ E+   LLG TG+GK+ T A +IE +QRP
Sbjct: 16  RRTTPFEVISEYTPSGDQPKAIRELTERINAGERDITLLGATGTGKSATAAWLIEQVQRP 75

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            ++MAPNK LAAQL SE +N  P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE++
Sbjct: 76  TLIMAPNKTLAAQLASELRNLLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEV 135

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           +R+RHSAT SLL R D +VVSSVSCIYG+G+ E Y   +V+L+ G  VE+ ELL  LV  
Sbjct: 136 ERLRHSATNSLLTRRDTVVVSSVSCIYGLGTPEEYVNRMVELENGMRVERDELLRQLVSM 195

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D+   RGTFRV GD+IEI P + E++A R+ MFG++I+ ++  +PLTG+ IR V+
Sbjct: 196 QYTRNDMDFRRGTFRVRGDTIEIIPVY-EELAIRIEMFGDEIDSLAVLHPLTGELIREVD 254

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              ++  SHYV  +  +  A+  I+ EL  R     +  +LLEAQRL  R TYDLEML  
Sbjct: 255 HTFLFPASHYVAGKERMQRAISSIQAELDERTEWFTQRNKLLEAQRLRMRTTYDLEMLRE 314

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            GSC  IENYSR++ GR  G PP TL +Y P+D LL +DESHVT+PQI GM+ GD  RK 
Sbjct: 315 IGSCAGIENYSRHIDGRAAGTPPHTLLDYFPDDFLLIIDESHVTVPQIRGMFEGDMARKR 374

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL ++GFRLPS MDNRPLRF E+      T+ +SATPG++ELE   G +VEQIIRPTGLV
Sbjct: 375 TLVDHGFRLPSAMDNRPLRFAEFQERVGQTVYLSATPGAYELEHSHG-VVEQIIRPTGLV 433

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP + ++  + Q++D+  EI     +  R+L+T LTKRMAE+LT Y  ER +RV Y+HS+
Sbjct: 434 DPKIVVKPTQQQIDDLLGEIQERVSRNERVLVTTLTKRMAEELTTYFSERGVRVEYLHSD 493

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           V TL R+E++R+LRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTI
Sbjct: 494 VDTLRRVELLRELRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTI 553

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+ +V +YAD IT S+++AI ET RRRE QL +N ++ I+P+ +++KI +V D 
Sbjct: 554 GRAARNVSGEVHMYADKITDSMRVAIAETERRREIQLAYNHENGIDPRPLRKKIQDVTDM 613

Query: 736 ILLED-------------------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
           +  ED                   A+TT  S   +  S ++ +    ++ L  QMHLAA+
Sbjct: 614 LAREDVDTQTLLQGGYRKPQNGKNASTTASSKPERVGSKAEGELLELIEQLTAQMHLAAE 673

Query: 777 NLNFEEAARIRDEIKRLKSSP 797
           +L FE AA  RDE+K LK   
Sbjct: 674 DLQFELAAHYRDELKELKQEL 694


>gi|160934320|ref|ZP_02081707.1| hypothetical protein CLOLEP_03191 [Clostridium leptum DSM 753]
 gi|156866993|gb|EDO60365.1| hypothetical protein CLOLEP_03191 [Clostridium leptum DSM 753]
          Length = 658

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/664 (54%), Positives = 476/664 (71%), Gaps = 8/664 (1%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N+  D   F++ + Y P+GDQP AIA+L++GI   +K Q LLGVTGSGKTFTMA +I+ +
Sbjct: 2   NNQNDKELFKLVSTYKPTGDQPEAIAKLVEGIKRGDKEQTLLGVTGSGKTFTMANIIQQV 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +V+A NK LAAQL SEF+ FFP ++VEYFVSYYDYYQPEAY+  TDTYIEK+S+IN
Sbjct: 62  QRPTLVLAHNKTLAAQLCSEFREFFPESSVEYFVSYYDYYQPEAYIATTDTYIEKDSAIN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           ++ID++RHSAT +L ER D I+V+SVSCIY +G+   Y  M++ L+ G    + ELL  L
Sbjct: 122 DEIDKLRHSATSALSERRDVIIVASVSCIYSLGNPIDYRTMVISLRPGMQKNRDELLKKL 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V+ QY+R DI  IR  FRV GD +EIFP+   D A RV  FG++++ ISEF PLTG+   
Sbjct: 182 VELQYERNDINFIRNKFRVRGDVVEIFPAQSNDTAVRVEFFGDEVDRISEFNPLTGEIKA 241

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           +++ I IY  SHY+ P+  +  A++ I++EL+ RL    +EG+LLEAQR+EQR  YD+EM
Sbjct: 242 DLKHIAIYPASHYIVPKEKMKEAIQEIEQELEERLAYFRREGKLLEAQRIEQRTRYDIEM 301

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L+  G C+ IENYSR + GR PG  P TL +Y P+D LLFVDESHVT+PQ+ GMY GD  
Sbjct: 302 LQEIGFCKGIENYSRVMAGREPGSAPFTLLDYFPKDYLLFVDESHVTLPQVRGMYAGDRA 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK +L EYGFRLPS  DNRPL F+E+       + VSATPG  E E+    IVEQ+IRPT
Sbjct: 362 RKESLIEYGFRLPSAYDNRPLNFDEFYQRINQAVFVSATPGDLEREKSTQ-IVEQVIRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP + ++    Q++D+  EINL   +G R+L+T LTK+MAEDLT YL    IRVRYM
Sbjct: 421 GLLDPEIIVKPTEGQIDDLISEINLRVAKGNRVLVTTLTKKMAEDLTSYLEGMGIRVRYM 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H ++ T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LV ILDADKEGFLRS  SLI
Sbjct: 481 HHDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVVILDADKEGFLRSDRSLI 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARN   +VI+YAD +T S++ AI ET RRR+ Q+ +N++H I P+++ +K+ EV
Sbjct: 541 QTIGRAARNAEGQVIMYADQVTPSMETAIRETQRRRDIQMRYNQEHGITPKTIVKKVAEV 600

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           ++    +D   +          L+K + +  ++ L K+M  AA  L FE AA +RD IK+
Sbjct: 601 LEISSHKDDKKSG-------KRLTKLERQQLIEQLTKEMKAAAKLLEFEHAAYLRDRIKK 653

Query: 793 LKSS 796
           L+S 
Sbjct: 654 LQSG 657


>gi|291286762|ref|YP_003503578.1| excinuclease ABC, B subunit [Denitrovibrio acetiphilus DSM 12809]
 gi|290883922|gb|ADD67622.1| excinuclease ABC, B subunit [Denitrovibrio acetiphilus DSM 12809]
          Length = 658

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/652 (56%), Positives = 497/652 (76%), Gaps = 2/652 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QL+    S E  Q+LLGVTGSGKT+TMA V++ +  P +V+A
Sbjct: 3   FELVSDYQPAGDQPEAIRQLVANYQSGENAQVLLGVTGSGKTYTMANVVQQLNVPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAY P+TDT+IEK+SSINE ID++RH
Sbjct: 63  HNKTLAAQLYGEFKKFFPNNAVEYFVSYYDYYQPEAYKPQTDTFIEKDSSINEDIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D ++V+SVSCIYG+GS E+Y  M+V L++ + VE + +L  LV+ QY+R 
Sbjct: 123 SATRSLLERRDVLIVASVSCIYGLGSPEAYHGMLVHLEVNEDVEMETVLKKLVEIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +    RGT+RV GD++E+FP+H +D+A+R+  +G++++ ISEF PLTG+ I+    + IY
Sbjct: 183 EYDFHRGTYRVKGDTLEVFPAHEDDLAYRIEFYGDEVDRISEFDPLTGKTIKERPKVAIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            N+HYVT   T+  A+  IK EL  R  E E + +LLEAQRL QR  +D+EM+  TG C 
Sbjct: 243 PNTHYVTTSTTIEDAVSIIKRELAQRCTEFENQNKLLEAQRLTQRTMFDIEMMLETGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR L  R PG+ PPTL  Y+P+D+L+ VDESH+TIPQI GMY GD  RK TL EY
Sbjct: 303 GVENYSRILENRQPGDTPPTLLSYLPKDALVIVDESHMTIPQIKGMYNGDRSRKTTLVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL+FEE+       + VSATP  +EL++  G++ EQIIRPTGL+DPP+E
Sbjct: 363 GFRLPAALDNRPLKFEEFRERVNRIMYVSATPDDFELKESMGLLAEQIIRPTGLMDPPIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +R QV+D+Y+EI   A++G R+L+T LTKRM+E+LT+Y  +  +R++Y+HSE+ TLE
Sbjct: 423 VRPSRNQVDDLYNEIRKTAEKGERVLVTTLTKRMSEELTKYYDDMGVRIKYLHSEIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI I++ LRLG+FDVLVGINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RIRILKQLRLGEFDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSEKSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN + I YA+ IT+S+Q A+DET RRREKQL +NK+H I PQ++K +I  +++ I  +D
Sbjct: 543 NVNGRAIFYAEKITRSMQSALDETKRRREKQLLYNKEHGITPQTIKNEISNILESIYEKD 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             T +I+ D   ++LS ++ +A +++L+K M   A NL FE+AAR+RD +  
Sbjct: 603 YVTVDINDDI-GITLSGRR-EADIEALKKLMQEHAQNLEFEKAARVRDMLFE 652


>gi|241668748|ref|ZP_04756326.1| excinuclease ABC subunit B [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877279|ref|ZP_05249989.1| excinuclease ABC subunit B [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843300|gb|EET21714.1| excinuclease ABC subunit B [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 668

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/667 (53%), Positives = 478/667 (71%), Gaps = 7/667 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + T Y P+GDQP AI  L++GI++  + Q+LLGVTGSGKT+TMA VI+  Q+P +
Sbjct: 1   MNKFNLVTKYAPAGDQPNAIKSLVEGINNGLQHQVLLGVTGSGKTYTMANVIQQTQKPCL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK +FP NAVEYFVSYYDYYQPEAYV  +DTYIEK+SS+NE I++
Sbjct: 61  IVAHNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT+++LERND I+V++VS IYG+G  E Y QM++ LK+G+ +  K+  + LV+ QY
Sbjct: 121 MRLSATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RG+FRV G+ ++IFP+  E  A RV  F ++IE IS    LT +K + +   
Sbjct: 181 SRNDMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIETISVIDSLTSKKTKTLHRA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+ ++HYV  +   +  ++ IK ELK R+   E+EG+LLEAQR+EQR  YD+EM++  G
Sbjct: 241 TIFPSTHYVASKERKDIVIEEIKAELKERVKYFEEEGKLLEAQRIEQRTKYDIEMIQELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L+GR PG+PPPTL +Y+PE++L+ VDESHVT+PQ  GMY+GD  RK+ L
Sbjct: 301 YCTGIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL+F E+  L P TI VSATP ++ELE+ Q   VEQ+IRPTGL+DP
Sbjct: 361 VNYGFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQN-TVEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R    QVED   EIN A  +  RIL+T LTK+MAE+LTEYL E  + VRY+HS++ 
Sbjct: 420 EVFVRPVAIQVEDALSEINKAIAKEERILITTLTKKMAENLTEYLSEHGVNVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++II DLR G FDVLVGINLLREGLD+PE G++ I DADKEGFLRS+ SLIQTIGR
Sbjct: 480 TVERVQIIHDLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--P 735
            ARN N + ILYAD +TKS++ A+DET RRR+ Q EHNKK+NI P+++ + I +++D  P
Sbjct: 540 VARNQNGRAILYADVVTKSMKKAMDETLRRRQLQDEHNKKNNITPKTIIKSIDDMLDSSP 599

Query: 736 ILLEDAATTNISIDAQQLSLSK----KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            + + A   N  +    + +S      +    +K+L K+M   A  L FE+A  IRD+I 
Sbjct: 600 EMQKRAYKNNSRLKVDDVDVSAILGMTEASKVIKALEKRMRAYAKELEFEQATAIRDKIT 659

Query: 792 RLKSSPY 798
            +K    
Sbjct: 660 EIKQKFI 666


>gi|297571462|ref|YP_003697236.1| excinuclease ABC subunit B [Arcanobacterium haemolyticum DSM 20595]
 gi|296931809|gb|ADH92617.1| excinuclease ABC, B subunit [Arcanobacterium haemolyticum DSM
           20595]
          Length = 682

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/679 (52%), Positives = 492/679 (72%), Gaps = 14/679 (2%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + +  +    F++ ++Y PSGDQPAAI +L + I++ EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVTDIVRQEAPFEVISEYTPSGDQPAAIKELAERINAGEKDIVLLGATGTGKSATTAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +++ PNK LAAQ+ +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+
Sbjct: 62  IEQIQRPTLIIEPNKTLAAQMAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN++++R+RHSAT SL+ R D +VV+SVSCIYG+G+ + Y   +V + +G  +E+  L
Sbjct: 122 SSINDEVERLRHSATNSLITRRDTVVVASVSCIYGLGTPQEYVDRMVDVHVGQELERDAL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD++EI P + E++A R+  FG++I+ I+  +PLTG
Sbjct: 182 LKQFVTMQYTRNDMAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDSIALLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             +R V+   I+  SHYV     +N+A+  I++EL+ RL EL ++ +LLEAQRLE R TY
Sbjct: 241 NVVRQVDHAYIFPASHYVAGEERMNSAIASIEDELRDRLGELREQNKLLEAQRLEMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEM+   GSC  IENYSR++ GR PG PP TL +Y PED +L +DESHVT+PQI  MY 
Sbjct: 301 DLEMMRNLGSCSGIENYSRHIDGRGPGTPPNTLLDYFPEDFVLIIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS MDNRPL+F E+      T+ +SATPG +E+E   G  VEQI
Sbjct: 361 GDMSRKRTLVEFGFRLPSAMDNRPLKFAEFLERIGQTVYLSATPGKYEMELSDG-YVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++  + Q++D+ +++ +  ++  R+L+T LTK+MAEDLT+Y  ER ++
Sbjct: 420 IRPTGLVDPEIIVKPTKGQIDDLLEQVRIRTERDERVLITTLTKKMAEDLTDYFAERGVK 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y+HS+V TL R+E++R+LRLGKFDVLVGINLLREGLD+PE  LVAILDADK+GFLRS 
Sbjct: 480 VEYLHSDVDTLRRVELLRELRLGKFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRST 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD+IT +++ AIDET RRREKQL +N+KH I+P+ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADSITPNMKEAIDETNRRREKQLAYNEKHGIDPKPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKK--------KGKAHLKSLRKQMHLAADNLNF 780
           I +V D ++ ED  T  +     +   S K        + +  L  L++QM +AA++L F
Sbjct: 600 IADVTDMLVREDIDTDELLKGGYRKEKSVKDRLPADGHEIELLLVELQEQMRVAAEHLQF 659

Query: 781 EEAARIRDEI----KRLKS 795
           E AAR+RDEI    + L++
Sbjct: 660 ELAARLRDEINDVKRELRA 678


>gi|289705494|ref|ZP_06501886.1| excinuclease ABC, B subunit [Micrococcus luteus SK58]
 gi|289557723|gb|EFD51022.1| excinuclease ABC, B subunit [Micrococcus luteus SK58]
          Length = 709

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/700 (50%), Positives = 476/700 (68%), Gaps = 36/700 (5%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
              ++ +  F++ + Y PSGDQP AIA+L + + + EK  +L+G TG+GK+ T A ++E 
Sbjct: 5   QKINRVVAPFEVISPYQPSGDQPKAIAELAERVEAGEKDVVLMGATGTGKSATTAWLVER 64

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +QRP +VM  NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSI
Sbjct: 65  LQRPTLVMVQNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSI 124

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           NE+++R+RHSAT +LL R D IVV++VSCIYG+G+ E Y + +V L+ G  +++  LL  
Sbjct: 125 NEEVERLRHSATNALLTRRDVIVVATVSCIYGLGTPEEYIEQMVTLRRGAEMDRDVLLRR 184

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
            V+ QY R D+   RGTFRV GD++EI P + E++A R+  FG++IE I   +PLTGQ +
Sbjct: 185 FVQMQYVRNDVDFHRGTFRVRGDTVEIIPMY-EELAVRIEFFGDEIESIQTLHPLTGQVV 243

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
           R  E + I+  SHYV     +  A+  I++EL+ RL ELE + +LLEAQRL  R TYDLE
Sbjct: 244 REEEEMYIFPASHYVAGDERMGRAITTIEDELRERLQELESQDKLLEAQRLRMRTTYDLE 303

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M++  G C  IENYSR++ GR  G  P  L +Y P+D LL VDESHVTIPQI  MY GD 
Sbjct: 304 MMQQMGYCNGIENYSRHIDGRPAGSAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYEGDM 363

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK TL E+GFRLPS MDNRPL+++E+      T+ +SATPG++EL Q  G  VEQIIRP
Sbjct: 364 SRKRTLVEHGFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGAYELGQADG-YVEQIIRP 422

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGLVDP V ++    Q++D+ ++I +   +  R+L+T LTKRMAEDLT+YL E  ++V Y
Sbjct: 423 TGLVDPQVVVKPTEGQIDDLLEQIRVRTAKDERVLVTTLTKRMAEDLTDYLLEAGVKVEY 482

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS+V TL R+E++R+LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSL
Sbjct: 483 LHSDVDTLRRVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSL 542

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARNV+ +V +YAD +T S++ AI+ET RRR  Q+ +N++H I+PQ ++++I +
Sbjct: 543 IQTIGRAARNVSGEVHMYADNVTDSMRRAIEETERRRAVQIAYNEEHGIDPQPLRKRIAD 602

Query: 732 VIDPILLEDAATTN----------------------------------ISIDAQQLSLSK 757
           + D +  EDA T +                                   +      SL  
Sbjct: 603 ITDQLAREDADTADFLKGMGGVKSGFDFGMGHRGLSSLDRAPATGEGAEAPAVDPASLPA 662

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           K     ++ + +QMH AA +L FE AAR+RDE+  LK   
Sbjct: 663 KDLADLIEQMSQQMHQAAADLQFELAARLRDEVGELKKEL 702


>gi|239636629|ref|ZP_04677631.1| excinuclease ABC subunit B [Staphylococcus warneri L37603]
 gi|239597984|gb|EEQ80479.1| excinuclease ABC subunit B [Staphylococcus warneri L37603]
          Length = 661

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 470/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +++ P GDQP AI +++KG+   ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKLNSEFDPQGDQPEAIKKIVKGVKEGKRHQTLLGATGTGKTFTMSNVIQQVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +E+ ELL  LV  QY R
Sbjct: 126 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMERSELLRKLVDVQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++++ I E   LTG+ IR  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEVDRIREVNYLTGEVIREREHFAI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    +  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R+ G  P TL +Y  +D L+ +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRSLGSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVD 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQIIRPTGL+DP +
Sbjct: 366 HGFRLPSALDNRPLKFEEFEEKTNQLVYVSATPGPYEIEHTDE-MVEQIIRPTGLLDPKI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R    Q++D+  EI     +  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 DVRPTENQIDDLLSEIQDRIDKNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +D +VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD IT S++ AIDET RRR+ Q+ HN+K+ I P+++ +KI +VI   +  
Sbjct: 545 RNDRGEVIMYADKITDSMRYAIDETQRRRDIQMAHNEKYGITPKTINKKIHDVISATVES 604

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D    N   +  +  ++KK+ +  ++++ K+M  AA +L+FE A  +RD +  LKS 
Sbjct: 605 DDTNENKQTEVPK-KMTKKERQKTIENIEKEMKKAAKDLDFERATELRDMLFELKSE 660


>gi|15837569|ref|NP_298257.1| excinuclease ABC subunit B [Xylella fastidiosa 9a5c]
 gi|21542296|sp|Q9PER1|UVRB_XYLFA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|9105897|gb|AAF83777.1|AE003935_3 excinuclease ABC subunit B [Xylella fastidiosa 9a5c]
          Length = 669

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/663 (55%), Positives = 493/663 (74%), Gaps = 6/663 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ+ + Y PSGDQP A+ +L+   H+    Q+LLGVTGSGKT+T+A V+E +Q+P +VM
Sbjct: 4   LFQLVSSYSPSGDQPTAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR
Sbjct: 64  APNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +AT++LL R+D +VV++VS IYG+G+ E Y  + + L +G+ +EQ++L+  L + QY R
Sbjct: 124 LAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLILSLGEHIEQRQLIRHLTELQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++ ++RG+FRV G+ +++FP+  E  A R+ +F  +IE +S F PLTGQ +R ++   +
Sbjct: 184 NELDLVRGSFRVRGEVVDVFPAESEMEALRIELFDGEIESLSLFDPLTGQTVRKLQRYSV 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HY T R    +A+  IK+ELK  L  L    +L+EAQRL QR  +DLEM+   G C
Sbjct: 244 YPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  M++GD  RK TL E
Sbjct: 304 NGIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEEW    P +I VSATPGS+E  +  G ++E ++RPTGL+DP +
Sbjct: 364 FGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYEFRESAGEVIELLVRPTGLIDPEI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR   TQV+D+  +IN+  + G R+L+T LTKRMAE+LTEYL E+ IR+RY+HSE+ T+
Sbjct: 424 EIRPVATQVDDLISQINVCIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEIDTV 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS +SLIQTIGRAA
Sbjct: 484 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP---- 735
           R+V  + ILYAD +T+S++ AIDET RRR+KQ E+N ++ I P+SV   I ++++     
Sbjct: 544 RSVRGRAILYADKVTRSMRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDG 603

Query: 736 --ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             +  +        + A   +L++ +  A +K L +QM+  A +L FE+AARIRD+I+RL
Sbjct: 604 VEVKSKGKGRRVDEVPADYCALNQAEIAAQMKVLEQQMYQHARDLEFEDAARIRDQIQRL 663

Query: 794 KSS 796
           + +
Sbjct: 664 REA 666


>gi|242372993|ref|ZP_04818567.1| excinuclease ABC subunit B [Staphylococcus epidermidis M23864:W1]
 gi|242349319|gb|EES40920.1| excinuclease ABC subunit B [Staphylococcus epidermidis M23864:W1]
          Length = 661

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 469/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +++ P GDQP AI +++ G++  ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKLNSEFEPQGDQPQAIQKIVDGVNEGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 126 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++++ I E   LTG+ IR  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEVDRIREVNYLTGEVIREREHFAI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    +  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQI GMY GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLVD 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP V
Sbjct: 366 HGFRLPSALDNRPLKFEEFEDKTKQLVYVSATPGPYELEHTDE-MVEQIIRPTGLLDPKV 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 DVRPTENQIDDLLSEIQERVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +D +VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD IT S+Q AIDET RRR+ Q  HN+K+ I P+++ +KI +VI   +  
Sbjct: 545 RNDKGEVIMYADKITDSMQYAIDETQRRRDIQTAHNEKYGITPRTINKKIHDVISATVES 604

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D        +  +  ++KK+ +  ++++ K+M  AA +L+FE+A  +RD +  LK+ 
Sbjct: 605 DETNEQKQTELPK-KMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKAE 660


>gi|194365163|ref|YP_002027773.1| excinuclease ABC subunit B [Stenotrophomonas maltophilia R551-3]
 gi|194347967|gb|ACF51090.1| excinuclease ABC, B subunit [Stenotrophomonas maltophilia R551-3]
          Length = 674

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/670 (55%), Positives = 486/670 (72%), Gaps = 11/670 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIA+L     +    Q LLGVTGSGKT+T+A VI+ +Q+P ++MA
Sbjct: 5   FELVSPYSPAGDQPDAIAKLTSNFEAGIAKQTLLGVTGSGKTYTIANVIQNVQKPTLIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR 
Sbjct: 65  PNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++LL R D IVV++VS IYG+G+ E Y  + + L  G+ ++Q++L++ L + QY R 
Sbjct: 125 AATKTLLSRPDAIVVATVSAIYGLGAPEDYLSLRLILSKGERIDQRDLINHLTQLQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RGTFRV G+ I++FP+  +  A R+ +F  ++E+I+ F PLTG+ +RN+    +Y
Sbjct: 185 EYELQRGTFRVRGEVIDVFPAESDSEALRIELFDGEVEKITLFDPLTGETMRNLMRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R  +  A++ IK ELK RL +L  + +L+EAQRL QR  +D+EM+   G C 
Sbjct: 245 PKTHYATTRERVLAAVETIKVELKERLEQLYAQNKLVEAQRLAQRTQFDIEMMAEVGFCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG+N GEPPPTLF+Y+P D+LL +DESHVTIPQI  M++GD  RK TL E+
Sbjct: 305 GIENYSRHLTGKNAGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVEF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEEW    P +I VSATPG +E  +    I E ++RPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFEEWEERCPRSIYVSATPGPYEYREAGEEITELVVRPTGLIDPVVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  E N   + G R+L+T LTKRMAE+LTEYL E  IRVRY+HS+V T+E
Sbjct: 425 IRPVGTQVDDLMSEANERIKAGDRVLVTTLTKRMAENLTEYLTEHGIRVRYLHSDVDTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  K ILYAD IT+S+Q AIDET RRR KQ+E+N++H I P+SV   I++V++    + 
Sbjct: 545 NVRGKAILYADKITRSMQAAIDETDRRRAKQVEYNEEHGIVPRSVARPIVDVLEGARSDA 604

Query: 741 AATTN-----------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           A                   A   SLS  +  A LK+L ++M+  A +L FE+AAR+RD+
Sbjct: 605 AEKEAKKGKGKGRAGVAEEAADYRSLSPAQLAARLKALEQKMYQHAKDLEFEDAARVRDQ 664

Query: 790 IKRLKSSPYF 799
           I++LK +   
Sbjct: 665 IRQLKEASLG 674


>gi|317121057|ref|YP_004101060.1| excinuclease ABC subunit B [Thermaerobacter marianensis DSM 12885]
 gi|315591037|gb|ADU50333.1| Excinuclease ABC subunit B [Thermaerobacter marianensis DSM 12885]
          Length = 693

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/663 (54%), Positives = 477/663 (71%), Gaps = 2/663 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +++ P GDQP AIA++ +      +V  LLG TG+GKT TMA VIE +Q P +
Sbjct: 1   MPAFKVVSEFEPRGDQPKAIAEITRAFREGARVVTLLGATGTGKTATMAWVIEQLQLPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LA QL +EFK FFPHNAVEYFVSYYDYYQPEAYVP+TDTYIEK++ IN++ID+
Sbjct: 61  VIAHNKTLAGQLAAEFKQFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDALINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT SL ER D IVV+SVSCIYG+G+ E Y  +++ L++G+ + ++++L  LV  QY
Sbjct: 121 LRHSATSSLFERKDVIVVASVSCIYGLGAPEDYRDLVLSLRVGNEMPREQILRKLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD IEIFP+ + + A RV +FG++I+ ++E   LTG+ +   + +
Sbjct: 181 TRNDVDFQRGTFRVRGDVIEIFPASMAERAIRVELFGDEIDRLTEIDALTGEVLAYRDHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SHYVT    L  A++ I+ EL+ RL EL  + +LLEAQRLEQR  YDLEML   G
Sbjct: 241 AIYPASHYVTHEWKLKRAIESIERELEERLAELRAQDKLLEAQRLEQRTRYDLEMLREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTGR PGEPP TL +Y P   L  +DESHVTIPQ+  MY G+  RK +L
Sbjct: 301 YCSGIENYSRHLTGRAPGEPPYTLLDYFPRPFLCIIDESHVTIPQLRAMYEGEMSRKDSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL+F+E+       + VSATPG +E E    +IVEQI+RPTGL+DP
Sbjct: 361 IDYGFRLPSARDNRPLKFDEFWEKVGQVLFVSATPGPFEREVS-DVIVEQIVRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R  R Q+ED+  EI    ++G R+L+T LTKRMAEDLT+YL E  I+VRY+HSE+ 
Sbjct: 420 EIEVRPTRGQIEDLLGEIRQRVERGHRVLVTTLTKRMAEDLTDYLREMGIKVRYLHSEID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS T+LIQTIGR
Sbjct: 480 TLERMEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSATALIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  KVI+YADTIT S++ AI+ET RRR+ Q ++N++H I PQ+V++ + +VI+   
Sbjct: 540 AARNVEGKVIMYADTITDSMRQAIEETYRRRKIQEDYNRRHGITPQTVRKAVRDVIEATH 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             +     ++   +   L + +    +K LRK+M  AA +L FE AA +RD I  L++  
Sbjct: 600 AAERPPEYLA-GKRLSELPRHQIPDLVKRLRKEMEQAARDLEFERAALLRDMILELEARR 658

Query: 798 YFQ 800
             Q
Sbjct: 659 LGQ 661


>gi|259502733|ref|ZP_05745635.1| excision endonuclease subunit UvrB [Lactobacillus antri DSM 16041]
 gi|259169378|gb|EEW53873.1| excision endonuclease subunit UvrB [Lactobacillus antri DSM 16041]
          Length = 698

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/664 (50%), Positives = 462/664 (69%), Gaps = 5/664 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +DY P+GDQP AI QL KGI + +K Q+LLG TG+GKTFT++ VI  + +P ++++
Sbjct: 27  FDLVSDYQPTGDQPEAIDQLTKGIENGDKAQILLGATGTGKTFTISNVIANVNKPTLILS 86

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFPHNAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++R+
Sbjct: 87  HNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRN 146

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LLERND IVV+SVS I+G+G+   Y   +V L +G  +++  LL  LV  QY R 
Sbjct: 147 AATTALLERNDVIVVASVSSIFGLGNPNEYQNSVVSLHVGQQLDRDFLLRQLVTIQYDRN 206

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   + A R+  FG++I+ I E   LTG+   + E + I+
Sbjct: 207 DIDFQRGRFRVHGDVVEIFPASHSETALRIEFFGDEIDRIREVDALTGEVKGDREEVSIF 266

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +    G+LLEA+R++QR TYD+EM+   G   
Sbjct: 267 PATHFMTNEDIMDVALPEIERDMKKQVQQFTDAGKLLEAERIQQRTTYDIEMMREMGYTN 326

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+  R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 327 GIENYSRYMDRRKPGEPPYTLLDFFPKDYLLVVDESHQTMPQVRGMYNGDRARKQMLIDY 386

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + +SATPG +E+EQ    + +QIIRPTGL+DP +E
Sbjct: 387 GFRLPSALDNRPLKLGEFEQHVNQVVYMSATPGPYEMEQT-DHVAQQIIRPTGLLDPTIE 445

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++++  EIN   ++  R+ +T LTK+M+EDLT+YL +  ++V+Y+HS++KTLE
Sbjct: 446 VRPVMGQIDNLVGEINKRIERHERVFVTTLTKKMSEDLTDYLKDLGLKVKYLHSDIKTLE 505

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 506 RTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 565

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           N +  VI+YAD +T+S+Q AIDET RRR  Q+++N++H+I P ++ + I E I       
Sbjct: 566 NEHGAVIMYADEVTESMQKAIDETKRRRSIQMKYNEEHHITPHTIVKPIQEAISATKETA 625

Query: 739 --EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              + A +          LS+      +  L +QM  AA  L+FE+AA +RD +  LK+ 
Sbjct: 626 DTGEQADSTEFTTQDFAKLSRDAQTKMVAELTEQMQAAAKRLDFEQAATLRDTVMELKAQ 685

Query: 797 PYFQ 800
              +
Sbjct: 686 MTGK 689


>gi|163841033|ref|YP_001625437.1| excinuclease ABC subunit B [Renibacterium salmoninarum ATCC 33209]
 gi|189037989|sp|A9WT85|UVRB_RENSM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|162954509|gb|ABY24024.1| excinuclease ABC, B subunit [Renibacterium salmoninarum ATCC 33209]
          Length = 693

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/678 (51%), Positives = 475/678 (70%), Gaps = 18/678 (2%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           + +  F++ ++Y P+GDQPAAIA L + I++ EK  +LLG TG+GK+ T A +IE +QRP
Sbjct: 9   RVVAPFEVISEYQPAGDQPAAIADLTERINNGEKDVVLLGATGTGKSATTAWLIEQVQRP 68

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +VM  NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SS+NE++
Sbjct: 69  TLVMVQNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSVNEEV 128

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           +R+R+SAT SLL R D IVV++VSCIYG+G+ E Y   +V LK GD V++ +LL   V  
Sbjct: 129 ERLRYSATNSLLTRRDVIVVATVSCIYGLGTPEEYVAGMVTLKQGDRVDRDQLLRQFVGI 188

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R DI   RGTFRV GD++EI P + E+ A R+  FG++IE+I   +PLTG+ IR   
Sbjct: 189 QYTRNDIDFHRGTFRVRGDTVEITPMY-EEQALRIEFFGDEIEKIFTLHPLTGEIIREEN 247

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + ++  SHYV     +  A+  I++EL +RL ELE + +LLEAQRL  R TYDLEM++ 
Sbjct: 248 EMYVFPASHYVAGPERMAKAITRIEDELAVRLKELEGQNKLLEAQRLRMRTTYDLEMMQQ 307

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR++ GR+ G  P  L +Y P+D LL +DESHVT+PQI  MY GD  RK 
Sbjct: 308 MGFCNGIENYSRHIDGRDSGSAPSCLIDYFPDDFLLVIDESHVTLPQIGAMYEGDMSRKR 367

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL ++GFRLPS MDNRPL+++E+      T+ +SATPG +E+ +  G +V+QIIRPTGL+
Sbjct: 368 TLVDHGFRLPSAMDNRPLKWDEFLERVGQTVYLSATPGKYEMAKADG-VVQQIIRPTGLI 426

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP V I+  + Q++D+  EI    ++  R+L+T LTKRMAEDLTEYL    ++V+Y+HS+
Sbjct: 427 DPEVIIKPTKGQIDDLLGEIRTRVERDERVLVTTLTKRMAEDLTEYLLGHGVKVQYLHSD 486

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           V TL R+E++R+LRLG FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS TSLIQTI
Sbjct: 487 VDTLRRVELLRELRLGVFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSATSLIQTI 546

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+ +V +YAD IT S+  AIDET RRR  Q+ +N +H ++P  ++++I ++ D 
Sbjct: 547 GRAARNVSGEVHMYADKITDSMAKAIDETNRRRAIQVAYNTEHGVDPTPLRKRIADITDS 606

Query: 736 ILLEDAATTNISIDAQQ----------------LSLSKKKGKAHLKSLRKQMHLAADNLN 779
           +  EDA T ++   A +                 ++  +     ++ L  QMH AA  L 
Sbjct: 607 LAREDADTKSLLESAGKGRSRGKAPVPVRHDGLAAVPAEDLVDLIEQLTAQMHSAAGELQ 666

Query: 780 FEEAARIRDEIKRLKSSP 797
           FE AAR+RDE+  LK   
Sbjct: 667 FELAARLRDEVGDLKKEL 684


>gi|311898894|dbj|BAJ31302.1| putative UvrABC system protein B [Kitasatospora setae KM-6054]
          Length = 696

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/688 (51%), Positives = 477/688 (69%), Gaps = 21/688 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             I +  + +  F++ + Y P+GDQPAAIA+L + + + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPITSIERSVAPFEVVSPYQPNGDQPAAIAELERRVRAGEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +V+LK+G+ V++  L
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVRLKVGEEVDRDAL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD++EIFP + E++A R+ MFG++IE +   +PLTG
Sbjct: 182 LRRFVDIQYTRNDLAFTRGTFRVRGDTVEIFPVY-EELAVRIEMFGDEIEALYTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I   +++ ++  SHYV     +  A+  I+ EL+  L  +EK+G+LLEAQRL  R TY
Sbjct: 241 EVISQDDSVYVFPASHYVAGPERMERAIAGIEAELEQSLARMEKQGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EML   G+C  +ENYS +  GR PG PP TL +Y PED LL +DESHVT+PQI  MY 
Sbjct: 301 DIEMLRQIGTCSGVENYSMHFDGREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS MDNRPL++EE+      T+ +SATPG +EL +  G  VEQI
Sbjct: 361 GDASRKRTLVEHGFRLPSAMDNRPLKWEEFQERIGQTVYLSATPGKYELARGDGQ-VEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGL+DP V ++    Q++D+  EI     +  R+L+T LTK+MAEDLT+Y    +IR
Sbjct: 420 IRPTGLIDPEVIVKPTEGQIDDLVHEIRQRVAKDERVLVTTLTKKMAEDLTDYFLGLDIR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD IT ++ LAI ET RRR  Q  +N++H I+PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADKITPAMDLAISETNRRRAVQQAYNEEHGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISI-------------------DAQQLSLSKKKGKAHLKSLRK 769
           I +++  +  ED  T  +                          SL   +    ++ + +
Sbjct: 600 IGDLLSSMSGEDVDTEELLATGYRQQGKGRAPVPSLGIDRKPAKSLPAAELADLIQQMTE 659

Query: 770 QMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +MH AA  L FE AAR+RDE+K LK   
Sbjct: 660 RMHTAAAELQFEAAARLRDEVKELKREL 687


>gi|300173722|ref|YP_003772888.1| excinuclease ABC subunit B [Leuconostoc gasicomitatum LMG 18811]
 gi|299888101|emb|CBL92069.1| excinuclease ABC, B subunit [Leuconostoc gasicomitatum LMG 18811]
          Length = 668

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/670 (50%), Positives = 477/670 (71%), Gaps = 7/670 (1%)

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
             ++ N       F++ + Y P+GDQP AI+QL+KGI++  K Q+LLG TG+GKTFT++ 
Sbjct: 2   PENVTNRE-----FEVVSQYQPTGDQPQAISQLVKGINAGVKEQILLGATGTGKTFTISN 56

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           V++ +++P +V++ NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK
Sbjct: 57  VVKTVRKPTLVLSHNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEK 116

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           +S++N++ID++R+SAT SLL R D IVV+SVS I+G+G    Y + ++ L++G+   + +
Sbjct: 117 DSAVNDEIDQLRNSATSSLLSRKDVIVVASVSSIFGLGDPHQYEEHVINLRVGNEYGRDQ 176

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           L+  L+  Q+ R DI   RGTFRV GD +EIFP+  +++A RV  FG++I+ I +   LT
Sbjct: 177 LMRDLIDVQFTRNDIDFHRGTFRVRGDVMEIFPASEDELALRVEFFGDEIDRIRDINSLT 236

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           G+ +   + + IY   H++T    ++TA+  IK+E+  ++   E EG+L+EAQR++QR  
Sbjct: 237 GETLAERDFVSIYPAKHFMTDDDQMSTALAGIKQEMTEQVSRFETEGKLIEAQRIKQRTE 296

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           YDL MLE  G    IENYSR++ GRNPGEPP TL ++ P+D L+  DESHVT+PQI GMY
Sbjct: 297 YDLAMLEEMGFVGGIENYSRWMDGRNPGEPPFTLLDFFPDDFLIVADESHVTMPQIRGMY 356

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ-CQGIIVE 546
            GD  RK TL  YGFRLPS +DNRPL+  E+       I +SATPG +ELE+     + +
Sbjct: 357 NGDRARKETLVNYGFRLPSALDNRPLKLPEFEKHVNQIIYMSATPGDYELERVTDNHVAQ 416

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           QIIRPTGL+DP +E+R    Q++D+  EIN  +++  R+ +T LTKRMAEDLT+YL    
Sbjct: 417 QIIRPTGLLDPEIEVRPVMGQIDDLVGEINARSEKNERVFITTLTKRMAEDLTDYLKNVG 476

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           I+V Y+HS++KTLER EI+RDLRLGK+DVL+GINLLREG+D+PE  LVAILDADKEGFLR
Sbjct: 477 IKVAYLHSDIKTLERTEILRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLR 536

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           +  SLIQTIGRAARN N  VI+YAD +T+S+Q AIDET RRRE Q+++N ++ I P ++K
Sbjct: 537 NPRSLIQTIGRAARNANGHVIMYADKVTRSMQEAIDETARRREVQMQYNAENGITPTTIK 596

Query: 727 EKIMEVID-PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           ++I ++I    +  D  TT          L + + K  + ++  QM  AA +L+FEEAA+
Sbjct: 597 KEIRDLISVRSVSTDGKTTIDLTQVAFKDLPQDEQKNIIANMEGQMKAAAKSLDFEEAAQ 656

Query: 786 IRDEIKRLKS 795
           +RD +  LK+
Sbjct: 657 LRDSVMTLKA 666


>gi|257093910|ref|YP_003167551.1| excinuclease ABC subunit B [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257046434|gb|ACV35622.1| excinuclease ABC, B subunit [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 692

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/675 (54%), Positives = 481/675 (71%), Gaps = 4/675 (0%)

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
                  + + + F++   + P+GDQPAAIA L++G+      Q LLGVTGSGKTFTMA 
Sbjct: 8   PEEPPLITFEGSPFRLAQPFLPAGDQPAAIAALVEGLADGLSFQTLLGVTGSGKTFTMAN 67

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           VI    RPA+V+APNK LAAQLY+EF+ FFP NAVEYFVSYYDYYQPEAYVP  D YIEK
Sbjct: 68  VIARTGRPALVLAPNKTLAAQLYAEFREFFPENAVEYFVSYYDYYQPEAYVPARDLYIEK 127

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           +SSINE I++MR SAT+SLLER DC++V++VSCIYGIG  + Y +MI+ +++GD + Q+E
Sbjct: 128 DSSINEHIEQMRLSATKSLLERRDCVIVATVSCIYGIGDRDEYHRMILTMRVGDRIGQRE 187

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           ++  L + QY+R +    RGTFRV GD I++FP+   + A R+S+F ++IE +  F PLT
Sbjct: 188 VIKRLAEMQYERNETDFRRGTFRVRGDVIDVFPAEHAEQAIRISLFDDEIEGLQLFDPLT 247

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           G     +    I+ +SHYVTPR T+  A++ IK+EL  R+     EGRL+EAQR+EQR  
Sbjct: 248 GHLQNRLLRFTIFPSSHYVTPRETVLRAIEKIKQELAERIAAFNAEGRLVEAQRIEQRTR 307

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           +DLEML+  G C+ IENYSR+++GR  GEPPPTL +Y+P D+L+F+DESHV+IPQ+ GMY
Sbjct: 308 FDLEMLDQIGFCKGIENYSRHISGRQAGEPPPTLIDYLPADALMFIDESHVSIPQVGGMY 367

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
           +GD  RK  L  YGFRLPS +DNRPL+F E+  L   TI +SATP  +E    QG +VEQ
Sbjct: 368 KGDRSRKENLVNYGFRLPSALDNRPLKFAEYEALLRQTIFLSATPADYETAH-QGQVVEQ 426

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           ++RPTGLVDP + +R A TQ++D+  EI L      R+L+T LTKRMAEDLT+YL E  +
Sbjct: 427 VVRPTGLVDPVLIVRPASTQIDDLLSEIRLRVSLAERVLVTTLTKRMAEDLTDYLGEHEV 486

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RVRY+HS++ T+ER+EIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS
Sbjct: 487 RVRYLHSDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRS 546

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           + SLIQTIGRAAR+++   ILYAD +T S+  AI ET RRR KQL  N+ H I    V +
Sbjct: 547 ERSLIQTIGRAARHLHGTAILYADRVTGSMSRAIAETERRRLKQLAFNEAHGIVATGVSK 606

Query: 728 KIMEVIDPILLEDAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           +I ++ID +     A   +    QQ S   +S+K+    LK L K M   A NL FE+AA
Sbjct: 607 RITDIIDGVYDAGNAQRELKAAQQQASYEAMSEKQLARELKRLEKSMLEHAKNLEFEKAA 666

Query: 785 RIRDEIKRLKSSPYF 799
             RDE+ R++   + 
Sbjct: 667 AARDELFRIRQQVFG 681


>gi|118587561|ref|ZP_01544985.1| excinuclease ABC, B subunit [Oenococcus oeni ATCC BAA-1163]
 gi|118432012|gb|EAV38754.1| excinuclease ABC, B subunit [Oenococcus oeni ATCC BAA-1163]
          Length = 673

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/661 (52%), Positives = 470/661 (71%), Gaps = 5/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL++G++   K Q+LLG TG+GKTFT++ VI ++ +P ++++
Sbjct: 11  FKLHSNYQPTGDQPTAINQLIEGVNKGTKEQVLLGATGTGKTFTISNVIASVNKPTLILS 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++R+
Sbjct: 71  HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRN 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL RND IVV+SVS I+G+G    Y   ++ L+ GD   +  L+  L+  QY R 
Sbjct: 131 SATSSLLSRNDTIVVASVSSIFGLGDPHQYKDHVISLRTGDEYGRNNLMRHLIDIQYVRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  ++ A RV  FG++I+ I E  PLTG+ +   + I I+
Sbjct: 191 DIDFARGTFRVRGDVVEIFPASEDEKAIRVEFFGDEIDRIREINPLTGEILLEDDFISIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T    L +A   I++E++  + + E++G+LLEAQRL+QR  YD+EML   G   
Sbjct: 251 PAKHFMTNDNILKSATDGIRQEMEECVKKFEQQGKLLEAQRLKQRTEYDIEMLLEMGYTN 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+DSLL VDESHVT+PQ+ GMY GD  RK TL +Y
Sbjct: 311 GIENYSRWMDGRKQGEPPFTLLDFFPKDSLLVVDESHVTMPQVRGMYNGDQARKKTLVDY 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ-CQGIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+  E+       I +SATPG +EL +     I EQIIRPTGL+DP +
Sbjct: 371 GFRLPSALDNRPLKLSEFEQHVNQVIYMSATPGDYELSRVTPDNIAEQIIRPTGLLDPEI 430

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  R Q++D+  EIN  A +  R+ +T LTKRM+EDLT YL E  ++V+Y+HS++KTL
Sbjct: 431 EVRPIRGQIDDLLGEINARAAKNERVFITTLTKRMSEDLTTYLKESGVKVQYLHSDIKTL 490

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIR+LRLGKFD LVGINLLREGLD+PE  LVAILDADK+GFLR++ SLIQTIGRAA
Sbjct: 491 ERTEIIRNLRLGKFDALVGINLLREGLDVPEVSLVAILDADKDGFLRNERSLIQTIGRAA 550

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736
           RN N  VI+YAD +T+++Q AIDET RRR  Q+++N++HNI P ++K++I   I     +
Sbjct: 551 RNSNGHVIMYADVVTENMQKAIDETARRRRIQIKYNEEHNITPTTIKKEIRGSIAISHEV 610

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              D +  +++  A    +  K  K  + +L +QM  AA  ++FEEAA++RD I  LK+ 
Sbjct: 611 QSADESKLDLTKVA-FADMPIKDQKEMVGNLTEQMKSAAKRMDFEEAAQLRDSILELKTE 669

Query: 797 P 797
            
Sbjct: 670 M 670


>gi|119961329|ref|YP_947815.1| excinuclease ABC subunit B [Arthrobacter aurescens TC1]
 gi|189037972|sp|A1R6F3|UVRB_ARTAT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|119948188|gb|ABM07099.1| excinuclease ABC, B subunit [Arthrobacter aurescens TC1]
          Length = 699

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/688 (50%), Positives = 472/688 (68%), Gaps = 24/688 (3%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
              ++ +  F++ +++ P+GDQP AIA+L + I++ EK  +LLG TG+GK+ T A +IE 
Sbjct: 5   QEINRVVAPFEVISEFKPAGDQPTAIAELTERINNGEKDVVLLGATGTGKSATTAWLIEQ 64

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +QRP +VM  NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYV +TDT+IEK+SSI
Sbjct: 65  VQRPTLVMVQNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVAQTDTFIEKDSSI 124

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           NE+++R+RHSAT +LL R D IVV++VSCIYG+G+ E Y   +V L+ G  + +  LL  
Sbjct: 125 NEEVERLRHSATNALLTRRDVIVVATVSCIYGLGTPEEYIAGMVTLRKGAEMNRDHLLRK 184

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
            V  QY R D+   RGTFRV GD++EI P + E++A R+  FG++IE I   +PLTG+ +
Sbjct: 185 FVSMQYARNDMDFHRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIENIQTLHPLTGEVL 243

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
           R+ E + ++  SHYV     +  A+K I++EL  RL  LE + +L+EAQRL  R TYDLE
Sbjct: 244 RDEEEMYVFPASHYVAGPERMARAIKRIEDELADRLKVLEGQNKLVEAQRLRMRTTYDLE 303

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M++  G C  IENYS ++ GRNPG  P  L +Y P+D LL VDESHVTIPQI  MY GD 
Sbjct: 304 MMQQMGFCNGIENYSVHIDGRNPGTAPHCLIDYFPDDFLLVVDESHVTIPQIGAMYEGDM 363

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK  L ++GFRLPS MDNRPL+++E+      T+ +SATPG +EL +  G  V+QIIRP
Sbjct: 364 SRKRNLVDFGFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGKYELGKADG-YVQQIIRP 422

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP V ++  + Q++D+  EI    ++  R+L+T LTKRMAEDLT+YL    ++V Y
Sbjct: 423 TGLIDPEVVVKPTKGQIDDLLGEIRTRTEKNERVLVTTLTKRMAEDLTDYLVGHGVKVEY 482

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS+V TL R+E++R+LR+G FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS TSL
Sbjct: 483 LHSDVDTLRRVELLRELRMGVFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSSTSL 542

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARNV+ +V +YAD IT S+  AI+ET RRR  Q+++N  H I+PQ +++KI +
Sbjct: 543 IQTIGRAARNVSGQVHMYADRITDSMAHAIEETNRRRAIQVQYNTDHGIDPQPLRKKIAD 602

Query: 732 VIDPILLEDAATTNI-------------------SIDAQQLSL---SKKKGKAHLKSLRK 769
           + D +  EDA T  +                   +   +Q  L     +     ++ L +
Sbjct: 603 ITDQLAKEDADTQELLNNNRLAKGGKRGKSAAKGAATVRQDGLAAAPAEDLVGLIEQLTE 662

Query: 770 QMHLAADNLNFEEAARIRDEIKRLKSSP 797
           QMH AA  L FE AARIRDE+K LK   
Sbjct: 663 QMHGAAAELQFEVAARIRDEVKELKREL 690


>gi|323697700|ref|ZP_08109612.1| excinuclease ABC, B subunit [Desulfovibrio sp. ND132]
 gi|323457632|gb|EGB13497.1| excinuclease ABC, B subunit [Desulfovibrio desulfuricans ND132]
          Length = 667

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/667 (50%), Positives = 465/667 (69%), Gaps = 3/667 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y   GDQP A+A+L+ G+ +  + Q+LLG TG+GKTFTMA V+  + RPA+
Sbjct: 1   MPDFELVSEYTLKGDQPQAVAELVAGLGAGVRDQVLLGATGTGKTFTMANVVATLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY+EF+  FPHNAVEYFVSYYDYYQPEAY+P +D YIEK+SSIN+ ID+
Sbjct: 61  VLAPNKTLAAQLYTEFRGLFPHNAVEYFVSYYDYYQPEAYLPHSDVYIEKDSSINDDIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+AT +LL R D ++V+SVSCIYG+GS + Y++M++ ++ G ++  + LL  LV+  Y
Sbjct: 121 LRHAATHALLTRKDVLIVASVSCIYGLGSPDFYAKMVIPVEEGQTMAMESLLGRLVEIHY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D    RGTFRV GD +EI P++  + A R+  FG++I+ ISE  PLTG+    +   
Sbjct: 181 ERNDYDFHRGTFRVRGDVVEIIPAYSREKALRIEFFGDEIDSISETDPLTGEVKDRLRKT 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SH+V+ R  L+ AM  I++EL+ RL  L++  +L+EAQRLEQR  YDLE +E  G
Sbjct: 241 VIYPGSHFVSDRDNLDRAMHDIRDELQSRLAYLKRGNKLVEAQRLEQRTQYDLETIEELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L GR  G+PP TL +Y P+D +LFVDESH+ +PQ+ GMYRGD  RK TL
Sbjct: 301 YCNGIENYSRHLDGRVEGQPPATLLDYFPDDFILFVDESHIALPQVGGMYRGDRSRKTTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS +DNRPL +EE+       + VSATPG  EL+  QG++VEQIIRPTGL+DP
Sbjct: 361 VDFGFRLPSALDNRPLNYEEFQERIHQAVYVSATPGPLELDLAQGVVVEQIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R  + Q++D+  E      +  R+L+T LTKRMAEDL +YL +  ++ RY+HS++ 
Sbjct: 421 QIEVRKTQGQIDDLLAECKKRQSRDERVLVTTLTKRMAEDLNDYLNQMGVQSRYLHSDID 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+ II+ LR G+F VLVGINLLREGLDIPE  LVAILD DKEGFLRS  SL+QT GR
Sbjct: 481 TLERMAIIQALREGEFFVLVGINLLREGLDIPEVSLVAILDGDKEGFLRSTRSLVQTFGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN + +VILYAD +T S+  A+ ET RRREKQ  +N++H I P ++++K+  +   + 
Sbjct: 541 AARNADGRVILYADKVTDSMAEAMGETERRREKQEAYNREHGITPTTIRKKVDNLFGDLG 600

Query: 738 LEDAATTNISIDAQ---QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   ++  A+        +K     +K L ++M  AA  L FE AA +RD I R++
Sbjct: 601 GHGDHGGTVAPAAEDGVDYGADQKTLNKTVKRLEREMREAAKELEFERAAELRDRIARIR 660

Query: 795 SSPYFQG 801
                 G
Sbjct: 661 ERMLELG 667


>gi|295395312|ref|ZP_06805516.1| excision endonuclease subunit UvrB [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971863|gb|EFG47734.1| excision endonuclease subunit UvrB [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 709

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/686 (51%), Positives = 487/686 (70%), Gaps = 21/686 (3%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
             +  + +  F++ ++Y PSGDQP AIA++ + +   EK  +LLG TG+GK+ T A +IE
Sbjct: 19  RPDVQRRVAPFEVVSEYSPSGDQPTAIAEIARRLDDGEKDVVLLGATGTGKSATTAWLIE 78

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP ++MAPNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAYVP+TDT+IEK+SS
Sbjct: 79  KVQRPTLIMAPNKTLAAQLANEFRQLLPHNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSS 138

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN++++R+RHSAT SLL R D +VVS+VSCIYG+G+ E Y   +V L++G+ V++ ELL 
Sbjct: 139 INDEVERLRHSATNSLLTRRDVVVVSTVSCIYGLGTPEEYVDRMVSLEVGEEVDRDELLK 198

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V+ QY R D+   RGTFRV GD++EI P + E++A R+  FG++IE +   +PLTG+ 
Sbjct: 199 RFVEMQYTRNDMAFTRGTFRVRGDTVEIIPQY-EELAIRIEFFGDEIEALHTLHPLTGEV 257

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           IR+ + + I+  SHYV     +  A+  I++EL++RL ELEK+ +LLEAQRL+ R TYDL
Sbjct: 258 IRDEDIVHIFPASHYVAGENRMGKAIAAIEDELQVRLAELEKQNKLLEAQRLKMRTTYDL 317

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+++ G    IENYSR++ GR  G  P  L +Y PED LL +DESHVT+PQI GMY GD
Sbjct: 318 EMMQSMGFTSGIENYSRHIDGRAAGTAPNCLLDYFPEDFLLVIDESHVTVPQIGGMYEGD 377

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL E+GFRLPS +DNRPL+F+E+      T+ +SATPG +ELE+ +G +VEQIIR
Sbjct: 378 MSRKRTLVEHGFRLPSALDNRPLKFDEFLQRIGQTVYLSATPGDFELERSRG-VVEQIIR 436

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP V ++  R Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E +I+V+
Sbjct: 437 PTGLVDPKVTVKPTRGQIDDLLGEIRDRIEKNERVLVTTLTKKMAEDLTDYLLEHDIKVQ 496

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL+R+E++ +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  S
Sbjct: 497 YLHSDVDTLKRVELLSELRAGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSKS 556

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQT+GRAARNVN +V +Y DTIT S++ AIDET RRRE Q+ +NK+H I+P+ + +KI 
Sbjct: 557 LIQTVGRAARNVNGEVHMYGDTITPSMREAIDETNRRREIQISYNKEHGIDPKPLVKKIA 616

Query: 731 EVIDPILLEDAATTNI-------------------SIDAQQLSLSKKKGKAHLKSLRKQM 771
           ++ + +  EDA T  +                   ++     +   +        L +QM
Sbjct: 617 DITERLQREDADTRELLTEFDYGKGKRGFNSVKSDTLKPDVTTAPSENLAELAAQLTEQM 676

Query: 772 HLAADNLNFEEAARIRDEIKRLKSSP 797
           H AA+ L FE AAR+RDE++ +K   
Sbjct: 677 HEAAEQLQFELAARLRDELQDIKKEL 702


>gi|325674226|ref|ZP_08153915.1| excision endonuclease subunit UvrB [Rhodococcus equi ATCC 33707]
 gi|325554906|gb|EGD24579.1| excision endonuclease subunit UvrB [Rhodococcus equi ATCC 33707]
          Length = 718

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/716 (49%), Positives = 481/716 (67%), Gaps = 30/716 (4%)

Query: 117 LKNGKIWTPHRSWSI-NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
             +      H  +   +   +    FQ+ ++Y P+GDQP AI +L + +   EK  +LLG
Sbjct: 3   FASEHPVVAHSEFRPVSEIERSDARFQVVSEYEPAGDQPQAIDELERRLREGEKDVVLLG 62

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GK+ T A +IE +QRP +VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPE
Sbjct: 63  ATGTGKSATTAWLIERVQRPTLVMAPNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPE 122

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AY+ +TDTYIEK+SSIN+ ++R+RHSAT SLL R D +VV+SVSCIYG+G+ +SY    +
Sbjct: 123 AYIAQTDTYIEKDSSINDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSI 182

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
           QL++G  V++  LL  LV  QY R D+   RG+FRV GD++EI PS+ E++A R+  FG+
Sbjct: 183 QLEVGVEVDRDALLRLLVDVQYNRNDMAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGD 241

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           ++E +   +PLTG  +R V+T++I+  +HYV     +  A++ I+ EL+ RL +LE  G+
Sbjct: 242 EVEALYYLHPLTGDVVRQVDTVRIFPATHYVAGPERMERAVQDIEAELEERLADLENRGK 301

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRL  R  YDLEM++  G C  IENYSR++ GR  G  P TL +Y PED LL +DE
Sbjct: 302 LLEAQRLRMRTQYDLEMIKQVGFCSGIENYSRHIDGRPAGSAPATLIDYFPEDFLLVIDE 361

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVT+PQI  MY GD  RK  L E+GFRLPS  DNRPL +EE+      T+ +SATPG++
Sbjct: 362 SHVTVPQIGAMYEGDMSRKRNLVEFGFRLPSATDNRPLTWEEFAGRIGQTVYLSATPGAY 421

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           EL Q  G  VEQ+IRPTGLVDP V ++  + Q++D+  EI   +++  R+L+T LTK+MA
Sbjct: 422 ELGQAGGEFVEQVIRPTGLVDPEVVVKPTKGQIDDLVHEIRERSERDERVLVTTLTKKMA 481

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL E  IRVRY+HS++ TL R+E++R LRLG++DVLVGINLLREGLD+PE  LVA
Sbjct: 482 EDLTDYLLELGIRVRYLHSDIDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVA 541

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS TSLIQTIGRAARNV+ +V +YAD IT S+Q AI+ET RRREKQ+ +N
Sbjct: 542 ILDADKEGFLRSTTSLIQTIGRAARNVSGQVHMYADKITDSMQRAIEETERRREKQIAYN 601

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATT--------------------------NISID 749
            +  ++PQ +++KI +++D +  E   T                            I   
Sbjct: 602 LEKGVDPQPLRKKIADILDQVYEEAEDTEVGVGGSGRNASRGRRAQGEAGRAVSAGIYEG 661

Query: 750 AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
               S+ + +    +K L  QM  AA +L FE A R+RDEI  LK     +G+D +
Sbjct: 662 RDVKSMPRAELADLVKELTDQMMNAARDLQFELAGRLRDEIADLKKE--LRGMDAA 715


>gi|227488124|ref|ZP_03918440.1| excision endonuclease subunit B [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227091986|gb|EEI27298.1| excision endonuclease subunit B [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 697

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/692 (51%), Positives = 492/692 (71%), Gaps = 10/692 (1%)

Query: 121 KIWTPHRSWSI-NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGS 179
               PH  +       +    F++ ++Y P+GDQP AI +L + I   EK  +L+G TG+
Sbjct: 7   HPVLPHSDFRPVEEVERREGTFEVISEYEPAGDQPKAIKELTERIQRGEKDIVLMGATGT 66

Query: 180 GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239
           GK+ T A +IE +QRP +VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ 
Sbjct: 67  GKSATAAWLIEQVQRPTLVMAPNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIA 126

Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
           +TDTYIEK+SSINE ++R+RHSAT +LL R D +VVSSVSCIYG+G+ +SY    +++++
Sbjct: 127 QTDTYIEKDSSINEDVERLRHSATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSLKIEV 186

Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359
           G+ +++   L  LV  QY+R D  + RG FRV GD+++I P++ E+VA RV  FG+++++
Sbjct: 187 GEEIDRDRFLRLLVDIQYERNDYDLKRGAFRVKGDTVDIIPAY-EEVAVRVEFFGDEVDQ 245

Query: 360 ISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419
           +   +PLTG+ IRNV+ ++I+  +HY+     +  A++ I+EEL+ R+   E  G+LLEA
Sbjct: 246 LYYIHPLTGEIIRNVDVLRIFPATHYIASEGRVEKAIEQIREELEERITSFENRGKLLEA 305

Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT 479
           QRL  R  YDLEM+E  G C  IENYSR++ GR  G+PPPTL +Y PED L  +DESHVT
Sbjct: 306 QRLRMRTEYDLEMIEEMGFCSGIENYSRHMDGREAGDPPPTLIDYFPEDFLTIIDESHVT 365

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           +PQI GMY GD  RK  L E+GFRLPS +DNRPL +EE+   +  T+ +SATPG +EL  
Sbjct: 366 VPQIGGMYEGDASRKRNLVEFGFRLPSALDNRPLTWEEFEERKGQTVYMSATPGDYELAA 425

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
             G  VEQ+IRPTGLVDP + ++  + Q++D+  EI + A++  R+L+T LTK+MAEDLT
Sbjct: 426 AGGEFVEQVIRPTGLVDPKIVVKPTKGQIDDLIHEIRVRAEKKERVLVTTLTKKMAEDLT 485

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           EYL E  +RVRYMHS+V TL+R+E++R LRLG++DVLVGINLLREGLD+PE  LV+ILDA
Sbjct: 486 EYLQENGVRVRYMHSDVDTLQRVELLRKLRLGEYDVLVGINLLREGLDLPEVSLVSILDA 545

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
           DKEGFLRS  SLIQTIGRAARNV+ +V +YAD+IT S+Q AIDET RRRE Q+ +NK+H 
Sbjct: 546 DKEGFLRSTKSLIQTIGRAARNVSGEVHMYADSITDSMQQAIDETERRREMQIAYNKEHG 605

Query: 720 INPQSVKEKIMEVIDPILLEDAATTNISIDA------QQLSLSKKKGKAHLKSLRKQMHL 773
           I+PQ +++KI +++D +  +       S DA         ++++ + +  +K LR QM  
Sbjct: 606 IDPQPLRKKIADILDLVYEDAEEGETPSADAVVAKDYDVSTMAQDEVEKLIKDLRAQMGA 665

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           AA  LNFE AAR+RDEI  L+     +GL ++
Sbjct: 666 AARELNFELAARLRDEIVSLEKE--LRGLKEA 695


>gi|227505038|ref|ZP_03935087.1| excision endonuclease subunit B [Corynebacterium striatum ATCC
           6940]
 gi|227198402|gb|EEI78450.1| excision endonuclease subunit B [Corynebacterium striatum ATCC
           6940]
          Length = 697

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/696 (50%), Positives = 478/696 (68%), Gaps = 9/696 (1%)

Query: 116 LLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
                 I        +    +    F++++++ PSGDQPAAIA+L + +   E+  +L+G
Sbjct: 3   FAAEHPILPVSEHRPVGEVERRSAEFKVESEFQPSGDQPAAIAELDERLSRGERDVVLMG 62

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GK+ T A +IE  QRP +VMAPNK LAAQL +E +   PHNAVEYFVSYYDYYQPE
Sbjct: 63  ATGTGKSATAAWLIEKQQRPTLVMAPNKTLAAQLANELRQLLPHNAVEYFVSYYDYYQPE 122

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AY+ +TDTYIEK+SSINE ++R+RHSAT +LL R D +VVSSVSCIYG+G+ +SY    V
Sbjct: 123 AYIAQTDTYIEKDSSINEDVERLRHSATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSV 182

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            ++ G+ +++   L  LV  QY+R D+G  RGTFRV GD+++I P++ E+ A R+  FG+
Sbjct: 183 IIEEGEEIDRDRFLRLLVDIQYERNDVGFTRGTFRVKGDTVDIIPAY-EERAVRIEFFGD 241

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           D++E+   +PLTG  +  V+ ++I+  +HYV     +  A++ IK EL  RL +LE  G+
Sbjct: 242 DVDELYYIHPLTGDVLERVDEVRIFPATHYVAGPERMAKAVEDIKAELAERLADLENRGK 301

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRL  R  YDLEM+E  G C  IENYSR++ GR  G  P TL +Y PED L  +DE
Sbjct: 302 LLEAQRLRMRTEYDLEMIEQVGFCSGIENYSRHIDGRPAGSAPATLLDYFPEDFLTIIDE 361

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVT+PQI GM+ GD  RK  L E+GFRLPS  DNRPL F+E+      T+ +SATPG++
Sbjct: 362 SHVTVPQIGGMFEGDMSRKRNLVEFGFRLPSATDNRPLTFDEFEERVGQTVYMSATPGNF 421

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           EL   QG  VEQ+IRPTGL+DP V ++  + Q++D+ DEI     +  R+L+T LTKRMA
Sbjct: 422 ELTASQGEYVEQVIRPTGLIDPKVTVKPTKGQIDDLIDEIRQRTAKQERVLVTTLTKRMA 481

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL E  ++VRY+HS++ TL+R+E++R LRLG++DVLVGINLLREGLD+PE  LVA
Sbjct: 482 EDLTDYLLEHGVKVRYLHSDIDTLQRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVA 541

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS TSLIQTIGRAARNV+ +VI+YAD IT S+Q AI+ET RRR KQ+ +N
Sbjct: 542 ILDADKEGFLRSTTSLIQTIGRAARNVSGEVIMYADKITDSMQEAIEETERRRAKQIAYN 601

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTNIS------IDAQQLSLSKKKGKAHLKSLRK 769
           ++H I+PQ +++KI +++D +   D      S            +++  + +  +  L  
Sbjct: 602 EEHGIDPQPLRKKIADILDQVYESDGEEAAASDPAALMDKPDVSTMAVDEVQKLIDDLTA 661

Query: 770 QMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           QM  AA  L FE A R+RDEI  LK     +GL ++
Sbjct: 662 QMGAAARELKFELAGRLRDEIADLKKE--LRGLKEA 695


>gi|25989628|gb|AAN28958.1| UvrB [Corynebacterium glutamicum]
          Length = 698

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/698 (50%), Positives = 477/698 (68%), Gaps = 12/698 (1%)

Query: 116 LLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
                 + +      +    +    F + +++ P+GDQPAAI +L + +   E+  +L+G
Sbjct: 3   FAAEHPVLSHSEHRPVGEIERSDDKFVVVSEFEPAGDQPAAIKELDERLDRGERNVVLMG 62

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GK+ T A +IE  QRPA+VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPE
Sbjct: 63  ATGTGKSATAAWLIEKQQRPALVMAPNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPE 122

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AY+ +TDTYIEK+SSINE ++R+RHSAT SLL R D +VVSSVSCIYG+G+ +SY    V
Sbjct: 123 AYIAQTDTYIEKDSSINEDVERLRHSATSSLLSRRDIVVVSSVSCIYGLGTPQSYLDRSV 182

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L +G+ +++   L  LV  QY+R D+G  RG FRV GD+++I P++ E++A R+  FG+
Sbjct: 183 VLNVGEEIDRDRFLRLLVDIQYERNDVGFTRGAFRVKGDTVDIIPAY-EELAVRIEFFGD 241

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ +   +PLTG  IR V  I+I+  +HYV     +  A+  IK EL++RL +LE  G+
Sbjct: 242 EIDALYYIHPLTGDTIRQVNEIRIFPATHYVAGPERMEKAVADIKAELEVRLADLENRGK 301

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRL  R  YDLEM+E  G C  IENYSR++ GR  G  P TL +Y PED L  +DE
Sbjct: 302 LLEAQRLRMRTEYDLEMIEQVGFCSGIENYSRHIDGRGEGTAPATLIDYFPEDFLTIIDE 361

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVT+PQI GM+ GD  RK  L E+GFRLPS MDNRPL +EE++  R  T+ +SATPG +
Sbjct: 362 SHVTVPQIGGMFEGDMSRKRNLVEFGFRLPSAMDNRPLTWEEFDERRGQTVFMSATPGKF 421

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           E+    G  VEQ+IRPTGLVDP V ++  + Q++D+  EI     +  R+L+T LTK+MA
Sbjct: 422 EIAAADGEFVEQVIRPTGLVDPKVTVKPTKGQIDDLIHEIRQRTDKDERVLVTTLTKKMA 481

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL E    VRY+HS++ TL+R+E++R LRLG++DVLVGINLLREGLD+PE  LVA
Sbjct: 482 EDLTDYLLENG-SVRYLHSDIDTLQRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVA 540

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS TSLIQTIGRAARNV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +N
Sbjct: 541 ILDADKEGFLRSTTSLIQTIGRAARNVSGEVIMYADKITDSMQYAIEETDRRREKQVAYN 600

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAA--------TTNISIDAQQLSLSKKKGKAHLKSL 767
           K+H I+PQ +++KI +++D +    A            +       S+  K+ +  +  L
Sbjct: 601 KEHGIDPQPLRKKIADILDQVYDNSADGAGPSASGDAAVVAKPDVSSMPAKEVQKLIDDL 660

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             QM  AA ++ FE A R+RDEI  LK     +G+ D+
Sbjct: 661 SAQMAAAARDVKFELAGRLRDEIFELKKE--LRGIKDA 696


>gi|239978861|ref|ZP_04701385.1| excinuclease ABC subunit B [Streptomyces albus J1074]
 gi|291450744|ref|ZP_06590134.1| excinuclease ABC subunit B [Streptomyces albus J1074]
 gi|291353693|gb|EFE80595.1| excinuclease ABC subunit B [Streptomyces albus J1074]
          Length = 715

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/707 (49%), Positives = 479/707 (67%), Gaps = 40/707 (5%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++   + +  F++ + Y PSGDQPAAIA L + + + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVSKIERTVAPFEVVSPYQPSGDQPAAIADLDRRVRAGEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V LK+G+ +++  L
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGEEIDRDAL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V+ QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE ++  +PLTG
Sbjct: 182 LRRFVEIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIETLTTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I + + + ++  SHYV     +  A+  I++EL  RL  LEK+G+LLEAQRL  R TY
Sbjct: 241 EIISDEQQLYVFPASHYVAGPERMERAVNDIEQELGERLTVLEKQGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EML   GSC  IENYS +  GR PG PP TL +Y PED LL +DESHVT+PQI  M+ 
Sbjct: 301 DIEMLRQIGSCSGIENYSMHFDGREPGTPPHTLLDYFPEDFLLVIDESHVTVPQIGAMHE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG++EL +  G  VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLKWEEFQERVGQTVYLSATPGNYELSRSDG-FVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+
Sbjct: 420 IRPTGLVDPEVVVKPTEGQIDDLVHEIRTRTEKDERVLVTTLTKKMAEDLTDYFLELGIQ 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +N ++ I+PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADRITPAMEKAIDETNRRREKQIAYNTENGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI--------------------------------------SIDA 750
           I +++  I  ED  T  +                                          
Sbjct: 600 INDIVATIAREDVDTEALLGTGYRQTKDGKAKAPVPDLGGGYDAPKAAKGGKKAAKKAAG 659

Query: 751 QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                   +    ++ +  +M  AA +L FE AAR+RDE+  +K   
Sbjct: 660 TPTDRPAAELAGQIEEMTNRMRAAAADLQFEVAARLRDEVGEMKKEL 706


>gi|118472594|ref|YP_888108.1| excinuclease ABC subunit B [Mycobacterium smegmatis str. MC2 155]
 gi|118173881|gb|ABK74777.1| excinuclease ABC, B subunit [Mycobacterium smegmatis str. MC2 155]
          Length = 736

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/704 (50%), Positives = 483/704 (68%), Gaps = 30/704 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
            +++   +    F++ + Y P+GDQPAAI +L + I + E+  +LLG TG+GK+ T A +
Sbjct: 33  RAVDEIVRTGKPFEVVSPYAPAGDQPAAIDELERRIRAGERDVVLLGATGTGKSATTAWL 92

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+
Sbjct: 93  IERLQRPTLVMAPNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKD 152

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN+ ++R+RHSAT SLL R D +VV+SVSCIYG+G+ +SY    V+L++G  V +  L
Sbjct: 153 SSINDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVELQVGQEVPRDGL 212

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R D+   RGTFRV GD++EI PS+ E++A R+  FG++IE +   +PLTG
Sbjct: 213 LRLLVDVQYNRNDVAFTRGTFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTG 271

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             +R VE+++I+  +HYV     +  A++ I++EL+ RL ELE +G+LLEAQRL  R  Y
Sbjct: 272 DVVRQVESLRIFPATHYVAGPERMAAAIESIEKELEERLAELENQGKLLEAQRLRMRTNY 331

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G C  IENYSR++ GR  G  P TL +Y PED LL +DESHVT+PQI GMY 
Sbjct: 332 DVEMMRQVGFCSGIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYE 391

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L ++GFRLPS +DNRPL +EE+      T+ +SATPG +E+ Q  G  VEQ+
Sbjct: 392 GDMSRKRNLVDFGFRLPSAVDNRPLTWEEFAERIGQTVYLSATPGPYEISQAGGEFVEQV 451

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++  + Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 452 IRPTGLVDPKVVVKPTKGQIDDLIGEIRTRTERDERVLVTTLTKKMAEDLTDYLLEMGIR 511

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSEV TL R+E++R LRLG++DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS 
Sbjct: 512 VRYLHSEVDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRST 571

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+P+ +++K
Sbjct: 572 RSLIQTIGRAARNVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPKPLRKK 631

Query: 729 IMEVIDPILLEDAATTNISI---------------------------DAQQLSLSKKKGK 761
           I +++D +  E   T ++ I                                ++ + +  
Sbjct: 632 IADILDQVYREADDTESVEIGGSGRNSSRGRRAQGEPGRAVSAGIVEGKDTSNMPRAELA 691

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             +K L  QM  AA +L FE AARIRDEI  LK     +G+D +
Sbjct: 692 DLIKELTDQMMAAARDLQFELAARIRDEIADLKKE--LRGMDAA 733


>gi|257792254|ref|YP_003182860.1| excinuclease ABC, B subunit [Eggerthella lenta DSM 2243]
 gi|325833634|ref|ZP_08166083.1| excinuclease ABC, B subunit [Eggerthella sp. HGA1]
 gi|257476151|gb|ACV56471.1| excinuclease ABC, B subunit [Eggerthella lenta DSM 2243]
 gi|325485558|gb|EGC88027.1| excinuclease ABC, B subunit [Eggerthella sp. HGA1]
          Length = 716

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/666 (53%), Positives = 488/666 (73%), Gaps = 2/666 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F+  + Y P+GDQP AI +L  G+    + Q LLGVTGSGKTFTMAKVIEA+Q+P +V
Sbjct: 24  TPFKAVSPYEPAGDQPQAIEKLATGVKEGLRYQNLLGVTGSGKTFTMAKVIEAVQKPTLV 83

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQL SE K FFP NAV YFVSYYDYYQPEAYVP +DT+IEK++SINE+++++
Sbjct: 84  MAPNKTLAAQLASELKEFFPDNAVVYFVSYYDYYQPEAYVPSSDTFIEKDASINEEVEKL 143

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R DCIVV+SVSCIYGIGS   Y+ M V +     +++ +++  L+  QY 
Sbjct: 144 RHAATSALLSRRDCIVVASVSCIYGIGSPMDYAGMAVFVDKQKDMDRDQVIHELIDIQYD 203

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD++++FP +  D   R+  +G++IE I+E   +TG+ +   E + 
Sbjct: 204 RNDYEQKRGTFRVRGDALDVFPPYA-DHPIRIEFWGDEIESITEIDNVTGEVLSEFEALP 262

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SHYVT RP ++ A+  I++EL+ RL + ++EG+LLEAQRLE R+ YDLEMLET   
Sbjct: 263 IWPASHYVTARPKMDRALGTIRDELRERLQQFKEEGKLLEAQRLEMRVNYDLEMLETMNF 322

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR++ GR PGEPP TL +Y P+D    +DESHVT+PQI GM+ GD  RK TLA
Sbjct: 323 CSGIENYSRHMDGREPGEPPYTLIDYFPKDFFCIIDESHVTVPQIRGMHEGDRSRKITLA 382

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPSC+DNRPLRF+E+    P  + VSATPG +E +  Q   VEQIIRPTGL+DP 
Sbjct: 383 EHGFRLPSCLDNRPLRFDEFEDRIPQFVYVSATPGDYEQKVSQQQ-VEQIIRPTGLLDPE 441

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R + +Q++D+ DE    A +  R+L+T LTK+MAEDLT++L ++ ++ RYMHS++ T
Sbjct: 442 IIVRGSASQIDDIIDESKERAARDERVLITTLTKKMAEDLTDHLLDQGVKARYMHSDIAT 501

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER+EI+RDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR+  SLIQTIGRA
Sbjct: 502 LERVEILRDLRRGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNHRSLIQTIGRA 561

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV+ +VI+YAD +T S+ LAIDET RRR  Q+++N++H I PQ++++ I +++  +  
Sbjct: 562 ARNVSGQVIMYADKMTDSMALAIDETKRRRAIQMKYNEEHGIEPQTIRKAINDIMSYVTD 621

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           E   TT   ++ +   LS+++    ++S+   M  A+ +++FEEAAR+RD++ +L+    
Sbjct: 622 EMGGTTAEQVNKELAELSREEVLRIIQSMEDDMASASQSMDFEEAARLRDQVVKLRVQVE 681

Query: 799 FQGLDD 804
               DD
Sbjct: 682 GGSEDD 687


>gi|271964484|ref|YP_003338680.1| excinuclease ABC subunit B [Streptosporangium roseum DSM 43021]
 gi|270507659|gb|ACZ85937.1| excinuclease ABC subunit B [Streptosporangium roseum DSM 43021]
          Length = 711

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/694 (52%), Positives = 488/694 (70%), Gaps = 26/694 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + +  + +  F++ TD  PSGDQP AIA+L + + + +K  +LLG TG+GKT T+A +
Sbjct: 10  RPVTDLQRKVAPFEVVTDMTPSGDQPTAIAELERRVKAGDKDNVLLGATGTGKTATVAWL 69

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +V+ PNK LAAQ  +E +   P+NA+EYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 70  IERLQRPTLVIQPNKTLAAQFANELREMMPNNAIEYFVSYYDYYQPEAYVPQSDTYIEKD 129

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN++++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +  LK+G  +E+  L
Sbjct: 130 SSINDEVERLRHSATNSLLTRRDTIVVASVSCIYGLGTPQEYVDRMTSLKVGQEIERDSL 189

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R D+   RGTFRV GD+IEI P + E++A R+ MFG++IE++S  +PLTG
Sbjct: 190 LRRLVDMQYTRNDLAFTRGTFRVRGDTIEIIPKY-EELAVRIEMFGDEIEKLSTMHPLTG 248

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I   E + I+  SHYV     +  A++ I+ EL   L  +E++G+LLEAQRL  R TY
Sbjct: 249 EVITEDEELYIFPASHYVAGTERMEKAVRGIEAELAQTLETMERQGKLLEAQRLRMRTTY 308

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEM+   G+C  IENYSR++ GR PG  P TL +Y PED LL +DESH T+PQI  MY 
Sbjct: 309 DLEMMRQIGTCSGIENYSRHMDGRAPGSAPNTLLDYFPEDFLLVLDESHQTVPQIGAMYE 368

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS MDNRPL++EE+      T+ +SATPG++EL + +G +VEQ+
Sbjct: 369 GDASRKRTLVEHGFRLPSAMDNRPLKWEEFLERIDQTVYLSATPGTYELGRSKGDVVEQV 428

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++  ++Q++D+  EI    ++  R+L+T LTK+M+EDLT+YL E  IR
Sbjct: 429 IRPTGLVDPEVIVKPTKSQIDDLVHEIRTRTEKDERVLVTTLTKKMSEDLTDYLLELGIR 488

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSEV TL RIE++R+LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+
Sbjct: 489 VRYLHSEVDTLRRIELLRELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 548

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD IT S++ AI+ET RRR KQ  +N+ + I+PQ +++K
Sbjct: 549 TSLIQTIGRAARNVSGQVHMYADRITPSMERAIEETNRRRAKQTAYNEANGIDPQPLRKK 608

Query: 729 IMEVIDPILLEDAATTNI-------------------------SIDAQQLSLSKKKGKAH 763
           I +++D +  EDA T  +                            A    + + + +A 
Sbjct: 609 IADILDSLNREDADTAQLLGGSGRQQSRGKAPVPGFVVKQVGQHAKAIAGEMPRAQLEAL 668

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++SL  QMH AA +L FE AAR+RDEIK LK   
Sbjct: 669 VESLTDQMHQAATDLQFEVAARLRDEIKELKREV 702


>gi|225022614|ref|ZP_03711806.1| hypothetical protein CORMATOL_02656 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305682155|ref|ZP_07404959.1| excinuclease ABC, B subunit [Corynebacterium matruchotii ATCC
           14266]
 gi|224944522|gb|EEG25731.1| hypothetical protein CORMATOL_02656 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658628|gb|EFM48131.1| excinuclease ABC, B subunit [Corynebacterium matruchotii ATCC
           14266]
          Length = 684

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/685 (51%), Positives = 475/685 (69%), Gaps = 4/685 (0%)

Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181
           + + +     ++ ++    F++ +DY P+GDQPAAIA+L + I+  E+  +LLG TG+GK
Sbjct: 1   MSSVNSHHQPDDIARTPGRFEVISDYQPAGDQPAAIAELTQRINRGERDIILLGATGTGK 60

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
           + T A +IE +QRP ++MAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +T
Sbjct: 61  SATAAWLIEQVQRPTLIMAPNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQT 120

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           DTYIEK+S+IN+ ++R+RH AT SLL R D +VVSSVSCIYG+G+ ++Y    V L  GD
Sbjct: 121 DTYIEKDSAINDDVERLRHRATSSLLSRRDVVVVSSVSCIYGLGNPQTYLDRSVLLNTGD 180

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
            +++   L  LV  QY+R DIG  RG FRV GD+I+I P++ E+ A RV  FG++I+ + 
Sbjct: 181 EIDRDHFLRLLVDIQYERNDIGFTRGAFRVKGDTIDIIPAY-EETAVRVEFFGDEIDALY 239

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
              PLTG  I   +TI+I+  +HYV     ++ A   IK EL  RL +LE  G+LLEAQR
Sbjct: 240 HINPLTGDIISQADTIRIFPATHYVATPERMHRATCDIKAELADRLKDLENRGKLLEAQR 299

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
           L  R  YDLEM+E  G C  IENYSR+L GR+ G  P TL +Y P+D L  +DESHVT+P
Sbjct: 300 LRMRTEYDLEMIEQVGFCSGIENYSRHLDGRSAGSAPATLLDYFPDDFLTIIDESHVTVP 359

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           QI  M+ GD  RK  L E+GFRLPS +DNRPL +EE+      T+ +SATPG +EL    
Sbjct: 360 QIGAMFEGDMSRKRNLVEFGFRLPSALDNRPLTWEEFEERVGQTVYMSATPGRYELTAAG 419

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G  VEQ+IRPTGLVDP + ++    Q++D+  EI     +  R+L+T LTK+MAEDLT+Y
Sbjct: 420 GEYVEQVIRPTGLVDPKITVKPTTGQIDDLIGEIRTRTAKNERVLVTTLTKKMAEDLTDY 479

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L +  I+VRY+HS+V TL+R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADK
Sbjct: 480 LLDTGIKVRYLHSDVDTLQRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADK 539

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN 721
           EGFLRS TSLIQTIGRAARNV+ +VI+YAD IT S+Q AIDET RRR+KQ+ +N +H I+
Sbjct: 540 EGFLRSTTSLIQTIGRAARNVSGEVIMYADKITDSMQYAIDETERRRKKQIAYNTEHGID 599

Query: 722 PQSVKEKIMEVIDP-ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
           PQ +++KI +++D         T +  +       S  + +  + +L   M  AA +LNF
Sbjct: 600 PQPLRKKIADILDQLTDTPHEDTPDDLVAITHQPNSTTEIQQLITTLTTHMGDAARDLNF 659

Query: 781 EEAARIRDEIKRLKSSPYFQGLDDS 805
           E AAR+RDEI  LK     +G+ D+
Sbjct: 660 ELAARLRDEIADLKKQ--LRGMKDA 682


>gi|166366874|ref|YP_001659147.1| excinuclease ABC subunit B [Microcystis aeruginosa NIES-843]
 gi|189037983|sp|B0JR86|UVRB_MICAN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|166089247|dbj|BAG03955.1| excinuclease ABC subunit B [Microcystis aeruginosa NIES-843]
          Length = 667

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/664 (54%), Positives = 464/664 (69%), Gaps = 4/664 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T FQ+Q  + P+GDQPAAI QL+  + ++ + Q LLG TG+GKTFT+A VIE + RP +
Sbjct: 1   MTAFQLQAPFQPTGDQPAAIDQLVDSLQNQHRFQTLLGATGTGKTFTIAAVIEKIGRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK SSIN++ID 
Sbjct: 61  VLAHNKTLAAQLCNELRQFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKSSSINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  + L +G   +Q++LL +LV  QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGMPAEYLKAAISLTVGQEFDQRQLLRALVSVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RG FR+ GD +EI P++ ED   ++  FG++IE I    PLTG+ ++ +E I
Sbjct: 181 NRNDLELTRGRFRLKGDILEIVPAY-EDRVIKIDFFGDEIESIRYLDPLTGEVLQKLERI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP   L  A + IK EL  RL+ELEK G+LLEAQRL+QR  YDLEML+  G
Sbjct: 240 SIYPARHFVTPEERLEVACRDIKTELDNRLLELEKAGKLLEAQRLDQRTRYDLEMLQEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  GEPP  L +Y PED LL VDESHV++PQI GMY GD  RK  L
Sbjct: 300 YCNGVENYSRHLAGRLAGEPPECLVDYFPEDWLLVVDESHVSVPQIRGMYNGDQSRKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+       I VSATPG WELEQ +  IVEQIIRPTG++DP
Sbjct: 360 IDHGFRLPSAADNRPLKSEEFWQKVNQCIFVSATPGDWELEQSENRIVEQIIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    QV+D+  EI    Q   R+L+T LTKRMAEDLTEYL ER I+VRY+HSE++
Sbjct: 420 EIFVRPTEGQVDDLLGEIKERVQLNERVLITTLTKRMAEDLTEYLQERGIKVRYLHSEIQ 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           +++RIEII+DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR+  SLIQTIGR
Sbjct: 480 SIQRIEIIQDLREGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRATRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR++  + ILY D +T S+  AI+ET RRR  Q E+N+KH I PQ + ++    I   L
Sbjct: 540 AARHIRGQAILYGDNLTDSMINAIEETKRRRAIQQEYNQKHGIIPQPIVKRSSNSILAFL 599

Query: 738 LEDAATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  +  ++        LS ++    ++ L  QM  AA NL FE AA+ RD IK+L+
Sbjct: 600 DISRRLNSQQLEQVCENIEELSLEQIPELIQQLEAQMKEAAKNLEFESAAKYRDRIKQLR 659

Query: 795 SSPY 798
               
Sbjct: 660 DKLL 663


>gi|296393098|ref|YP_003657982.1| excinuclease ABC subunit B [Segniliparus rotundus DSM 44985]
 gi|296180245|gb|ADG97151.1| excinuclease ABC, B subunit [Segniliparus rotundus DSM 44985]
          Length = 706

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/709 (49%), Positives = 482/709 (67%), Gaps = 20/709 (2%)

Query: 107 ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS 166
             + + D+PL              +    +    F++ +++ P+GDQPAAIA+L + I +
Sbjct: 5   REMDEHDHPLGAVP-------PGMLAEVRRLQQPFEVVSEHQPAGDQPAAIAELQRRIEA 57

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            E+  +LLG TG+GK+ T A +IE +QRP +VMAPNK LAAQL +E +   P NAVEYFV
Sbjct: 58  GERDVVLLGATGTGKSATTAWLIERLQRPTLVMAPNKTLAAQLANELREMLPKNAVEYFV 117

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
           SYYDYYQPEAY+ +TDTYIEK+SS+N+ ++R+RHSATR+LL R D +VV+SVSCIYG+GS
Sbjct: 118 SYYDYYQPEAYIAQTDTYIEKDSSVNDNVERLRHSATRNLLSRRDVVVVASVSCIYGLGS 177

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            +SY    V L  G    + +LL  LV  QY R D+   RGTFRV GD++EI P++ E++
Sbjct: 178 PQSYLDRSVLLTKGQEAGRDKLLRLLVDMQYDRNDVAFTRGTFRVRGDTVEIIPAY-EEL 236

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
           A RV  FG++I+ ++    LTG  + NV+ ++I+  +HY+T    +   M+ I++EL  R
Sbjct: 237 AVRVEFFGDEIDGLAYLNKLTGDVVANVDQVRIFPATHYITGEGRMAQVMEAIRQELAER 296

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L  LE +G+LLEAQRL  R  YDLEM++  G C  IENYSR++ GR PG  P TL +Y P
Sbjct: 297 LAVLEAQGKLLEAQRLRMRTEYDLEMIQQVGFCSGIENYSRHMDGRGPGTAPATLLDYFP 356

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
           ED L  +DESHVT+PQI  M+ GD  RK  L EYGFRLPS +DNRPL +EE++     T+
Sbjct: 357 EDFLTVIDESHVTVPQIGAMFEGDMARKRNLVEYGFRLPSAVDNRPLTWEEFSERVGQTV 416

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
            +SATPG +EL Q  G  VEQ+IRPTGLVDP + ++  + Q++D+  EI   A++  R+L
Sbjct: 417 YLSATPGPYELGQAGGEFVEQVIRPTGLVDPKIVVKPTKGQIDDLVHEIRQRAERDERVL 476

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +T LTK+MAEDLT+YL E  IRVRY+HS++ TL R+E++R+LR G++DVLVGINLLREGL
Sbjct: 477 VTTLTKKMAEDLTDYLLELGIRVRYLHSDIDTLRRVELLRELRQGEYDVLVGINLLREGL 536

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           D+PE  LV ILDADKEGFLRS TSLIQTIGRAARNV+ +V +YADTIT S++ AIDET R
Sbjct: 537 DLPEVSLVCILDADKEGFLRSTTSLIQTIGRAARNVSGEVHMYADTITDSMRNAIDETER 596

Query: 707 RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK-------- 758
           RR KQ+ +N ++ I+P+ +++KI +++D +  E   T +          SKK        
Sbjct: 597 RRAKQIAYNTENGIDPRPLRKKIADILDRVYEESEDTADAKSAKAPQKPSKKKTSAGTTP 656

Query: 759 --KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             +  A +  L +QM  AA  L FE AAR+RDE+   K     +G+D +
Sbjct: 657 RTELVALIDELNEQMLSAARELRFELAARLRDELAEYKKE--LKGMDAA 703


>gi|241889975|ref|ZP_04777273.1| excinuclease ABC subunit B [Gemella haemolysans ATCC 10379]
 gi|241863597|gb|EER67981.1| excinuclease ABC subunit B [Gemella haemolysans ATCC 10379]
          Length = 666

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/659 (53%), Positives = 462/659 (70%), Gaps = 2/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q+ Y P GDQ  AIA+L +G+++ EK Q LLG TG+GKTFT+A +++ + +P +V+A
Sbjct: 10  FDLQSKYDPKGDQINAIAELTEGLNNGEKYQTLLGATGTGKTFTIANIVKNVGKPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY+E K FFP+N VEYFVSYYDY+QPEAYVP TDTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYNELKEFFPNNRVEYFVSYYDYFQPEAYVPSTDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL +R+D I+VSSVSCIYG+GS E YS +++ L++GD + + +++  L+  QY R 
Sbjct: 130 SATSSLFDRDDVIIVSSVSCIYGLGSPEEYSSLVLSLRVGDEISRNKIMEKLISIQYMRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD IEIFP+   + + R+ MFG++I+ I E  PLTG+ +  +E I IY
Sbjct: 190 DIEFTRGNFRVRGDVIEIFPASRSENSVRIEMFGDEIDRIREINPLTGEVLSELEHIAIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+V        A+K I+ EL+ RL  L  E +LLEAQRLEQR  YDLEM+E  G C 
Sbjct: 250 PASHFVAGDEKTKEAIKRIRAELEERLKVLNMENKLLEAQRLEQRTNYDLEMMEEMGFCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LT R PG  P TL +Y P+D LL VDESHVT+PQ+ GM+ GD  RK  L +Y
Sbjct: 310 GIENYSLHLTLREPGSTPYTLLDYFPDDWLLVVDESHVTLPQVRGMFNGDRARKQVLVDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL FEE+       I VSATPG +ELE    I  EQIIRPTGL+DP ++
Sbjct: 370 GFRLPTALDNRPLNFEEFEKKLNQAIFVSATPGDFELENSTKIT-EQIIRPTGLLDPIID 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV D+  E      +G R+L+T LTK+MAE LT YL E  ++V Y+HS++KTLE
Sbjct: 429 IRPVSDQVFDITKEAEKIIAKGERVLITTLTKKMAESLTAYLKENGLKVEYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLGKFD+L+GINLLREGLDIPE  LVAILDADKEGFLR   +L+QTIGRAAR
Sbjct: 489 RTEIIRNLRLGKFDILIGINLLREGLDIPEVSLVAILDADKEGFLRGDKALLQTIGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT+S++ AIDET RRRE Q+ +N++H I PQ++ + I + I     E 
Sbjct: 549 NANGRVIMYADNITRSMRKAIDETNRRREIQMAYNEEHGITPQTIIKDIRDSI-SAKKEV 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
                I    +  +++    + HL  L +QM  AA+   FE+AA++RD I  LK     
Sbjct: 608 INDEEILELEETTNINDDNIEEHLAELEQQMFTAAEKFEFEQAAKLRDTIAELKEKYKL 666


>gi|260881593|ref|ZP_05404787.2| excinuclease ABC subunit B [Mitsuokella multacida DSM 20544]
 gi|260848464|gb|EEX68471.1| excinuclease ABC subunit B [Mitsuokella multacida DSM 20544]
          Length = 699

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/677 (51%), Positives = 467/677 (68%), Gaps = 5/677 (0%)

Query: 121 KIWTPHRSWSINN----HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGV 176
           +IW  +R   +      H  +   F++   + P GDQP AIA+L  G+ + ++ Q+LLG 
Sbjct: 3   RIWEGNRMAMVPKLNTMHFDEERPFEVVAPFEPMGDQPQAIAELAAGVENGQQAQVLLGA 62

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           TG+GKT+T+AKVIE +Q+P +V+A NK LAAQL SEFK FFP+N V YFVSYYD+YQPEA
Sbjct: 63  TGTGKTYTIAKVIEKVQKPTLVIAHNKTLAAQLASEFKAFFPNNYVGYFVSYYDFYQPEA 122

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           Y+  TDTYIEK++SIN++ID +RHSAT SL ER D I+V+SVSCIYG+GS ESY +M++ 
Sbjct: 123 YIASTDTYIEKDASINDEIDELRHSATCSLFERRDVIIVASVSCIYGLGSPESYHEMVLS 182

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L  G  V++  +L  LV  +Y+R D+   RG FRV GD IE+FP+   + A R+ +FG++
Sbjct: 183 LHKGQIVDRDAILKKLVSIRYERNDVAFERGQFRVRGDVIEVFPAGYNNRAVRIELFGDE 242

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           ++ I EF  +TG+         ++  SHYVT    L  AMK I+ E++ ++ + + EG+L
Sbjct: 243 VDRIVEFDVVTGEVYGERTHSMVFPASHYVTEDEDLKIAMKDIEAEMEEQVKKFKAEGKL 302

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           +EAQR+EQR  YDLEM++  G C  IENYSR+LT R  GE P TL +Y PED L+ +DES
Sbjct: 303 IEAQRIEQRTRYDLEMMQEMGYCSGIENYSRHLTHRKAGEAPYTLLDYFPEDFLIVMDES 362

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536
           HVT+PQ+  MY GD  RK +L E GFRLPS  DNRPL FEE+       I VSATPG +E
Sbjct: 363 HVTLPQLHAMYAGDRSRKVSLVENGFRLPSAFDNRPLTFEEFAARINQIIYVSATPGKYE 422

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LEQ    + +QIIRPTGL+DP +E+R    Q++D+  EI +  ++  R+L+T LTK+MAE
Sbjct: 423 LEQ-AQQVAQQIIRPTGLLDPEIEVRPLEGQIDDLLAEIKVRIERNERVLVTTLTKKMAE 481

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +LT+Y  E  ++VRY+HS++ T+ER EII DLR G+FDVLVGINLLREGLD+PE  L+AI
Sbjct: 482 NLTDYFTEVGVKVRYLHSDIATIERAEIIHDLRAGEFDVLVGINLLREGLDMPEVSLIAI 541

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
           LDADKEGFLRS TSLIQ IGRAARN    VI+YAD IT S++ AIDET RRRE Q  +NK
Sbjct: 542 LDADKEGFLRSDTSLIQIIGRAARNARGHVIMYADRITDSMKRAIDETARRREIQDGYNK 601

Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
            H I P+++ + I  +I+  L+ ++          +  L+KK  +  +K+L ++M  A+ 
Sbjct: 602 AHGITPKTIVKPIKPLIETTLVAESGGKYEVKKGSKKKLTKKDRENLIKTLTREMQQASR 661

Query: 777 NLNFEEAARIRDEIKRL 793
            L FE AA +RD I  L
Sbjct: 662 ALEFERAAELRDMILEL 678


>gi|157803395|ref|YP_001491944.1| excinuclease ABC subunit B [Rickettsia canadensis str. McKiel]
 gi|189037992|sp|A8EXS6|UVRB_RICCK RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|157784658|gb|ABV73159.1| excinuclease ABC subunit B [Rickettsia canadensis str. McKiel]
          Length = 661

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/661 (59%), Positives = 490/661 (74%), Gaps = 3/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + ++Y P+GDQP AI +++ G++S+++ Q+LLG+TGSGKTFTMA +I  M RP +
Sbjct: 1   MNNFSIISEYKPAGDQPKAIDEIIAGLNSKKRSQMLLGITGSGKTFTMANIIARMNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MA NK LAAQ+YSE K  FP NA+EYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID 
Sbjct: 61  IMAHNKTLAAQIYSEMKLMFPKNAIEYFVSYYDYYQPEAYIARTDTFIEKDSSINEQIDL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSATRSLLER D IVVSSVSCIYG+GS   Y QM V L+ G S  + +LLS LV  QY
Sbjct: 121 MRHSATRSLLERRDVIVVSSVSCIYGLGSPNLYYQMTVNLESGKSYPRDKLLSDLVNLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DIG  RG FRV GD+I+IFPSH  D AWR+S  GN++E I EF PLTG K+  ++  
Sbjct: 181 ERNDIGFERGCFRVKGDNIDIFPSHYSDKAWRLSFVGNELEYIHEFDPLTGTKLAKLDKA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++ NSH+V P+ T+N A+  I+ EL+ RL  L+ + ++LE QRL QR  YDLEML TTG
Sbjct: 241 MVFGNSHFVIPQETVNKAISEIEVELQKRLELLKSQNKILETQRLNQRTQYDLEMLTTTG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC+ IENYSR+LTGRN GEPPPTLFEY+P+D+LLFVDESHV++PQI  MY GD  RK  L
Sbjct: 301 SCKGIENYSRFLTGRNAGEPPPTLFEYLPKDALLFVDESHVSVPQIRAMYNGDRARKKVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEEW   RP TI VSATPG +ELE+  G++VE IIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLKFEEWEKFRPQTIFVSATPGPFELEETGGLVVELIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              I+ A  QVED+  EI     +GLR+L+T LTK+MAEDLT YL E   +  Y+HS V 
Sbjct: 421 ECIIKPATNQVEDLISEIQTTIAKGLRVLVTTLTKKMAEDLTTYLQELKYKSSYLHSNVH 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+EI+RDLR G  ++LVGINLLREGLDIPECGLVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 481 TLERLEILRDLRQGTINILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VILYAD ITKSI  A+ ET RRR+ Q E+N+KH I PQ++   I  +     
Sbjct: 541 AARNSEGRVILYADKITKSIDKAVSETMRRRQIQQEYNEKHGIIPQTINRTIYAL---TA 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           L+   +      A  L  +  K KAH+  L+K M  AA NL FE+A ++RD++K L+ + 
Sbjct: 598 LKKIDSKLDKKQAHILFDNPAKLKAHIYKLKKAMLKAASNLEFEQATKLRDQLKNLEEAA 657

Query: 798 Y 798
            
Sbjct: 658 L 658


>gi|218248416|ref|YP_002373787.1| excinuclease ABC subunit B [Cyanothece sp. PCC 8801]
 gi|257061482|ref|YP_003139370.1| excinuclease ABC subunit B [Cyanothece sp. PCC 8802]
 gi|218168894|gb|ACK67631.1| excinuclease ABC, B subunit [Cyanothece sp. PCC 8801]
 gi|256591648|gb|ACV02535.1| excinuclease ABC, B subunit [Cyanothece sp. PCC 8802]
          Length = 667

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/667 (52%), Positives = 465/667 (69%), Gaps = 6/667 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
            + F++Q  + P GDQP AIAQLL  + +  + Q LLG TG+GKTF++A VIE + +P +
Sbjct: 3   FSSFRLQAPFEPQGDQPQAIAQLLASLQAGNRFQTLLGATGTGKTFSIASVIEKVGKPTL 62

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAY+P +DTYIEK SSIN++ID 
Sbjct: 63  VLAHNKTLAAQLCNELRQFFPDNAVEYFISYYDYYQPEAYIPVSDTYIEKSSSINDEIDM 122

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V L++G  V+Q+ LL  LV  QY
Sbjct: 123 LRHSATRSLFERKDVIVVASISCIYGLGMPSEYLKAAVPLEVGQEVDQRNLLRELVGIQY 182

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI + RG FRV GD +EI P++ ED   RV  FG++IE I    P+TG+ +++++ +
Sbjct: 183 SRNDIELQRGRFRVKGDVLEIVPAY-EDRIIRVEFFGDEIEAIRYLDPVTGEILQSLKMV 241

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP   +  A + IK EL+ ++  LEKEG+LLEAQR+ QR  YDL++L+  G
Sbjct: 242 NIYPARHFVTPDEQIEIACQQIKVELEEQIEALEKEGKLLEAQRISQRTRYDLDLLQEVG 301

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSRYL GR  GEPP  L +Y P+D LL VDESHVT+PQ+ GMY GD  RK  L
Sbjct: 302 YCNGVENYSRYLAGRKAGEPPECLIDYFPQDWLLVVDESHVTVPQLRGMYNGDRSRKQVL 361

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+       I VSATPG WE+EQ    I+EQIIRPTG++DP
Sbjct: 362 IDHGFRLPSAADNRPLKSEEFWTKVNQCIFVSATPGDWEIEQSGDRIIEQIIRPTGVLDP 421

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    QV+D+  EI    ++  R+L+T LTKRM+EDLTEYL ER ++V+Y+HSEVK
Sbjct: 422 EIFVRPTEGQVDDLLGEIKQRVKRQERVLITTLTKRMSEDLTEYLSERGVKVQYLHSEVK 481

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEI++ LR G+FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 482 SIERIEILQSLRKGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 541

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK----IMEVI 733
           AAR+VN + ILYAD +TKS+  AI+ET RRR  Q+ HNK +NI P+ + +K    I+  +
Sbjct: 542 AARHVNGQAILYADNLTKSMIKAIEETERRRGIQMAHNKINNITPKPIIKKETNSILSFL 601

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           D     ++       + +   L  +K    ++ L  QM  AA  L FEEAA+ RD IK L
Sbjct: 602 DISRRLNSQQLEEIYE-KSDDLPLEKVPELIQQLENQMKEAAQKLEFEEAAKYRDRIKNL 660

Query: 794 KSSPYFQ 800
           +      
Sbjct: 661 RDKLLGN 667


>gi|111223999|ref|YP_714793.1| excinuclease ABC subunit B [Frankia alni ACN14a]
 gi|111151531|emb|CAJ63249.1| ATP-dependent DNA excision repair enzyme UvrABC, UvrB subunit
           [Frankia alni ACN14a]
          Length = 725

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/697 (51%), Positives = 481/697 (69%), Gaps = 30/697 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           +  +    F++ +D+ PSGDQPAAI +L + + + +   +LLG TG+GK+ T A ++E +
Sbjct: 26  DIERTRAPFEVVSDFSPSGDQPAAIDELARRVRAGDTNVVLLGATGTGKSATTAWLVERL 85

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +VMAPNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN
Sbjct: 86  QRPTLVMAPNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSIN 145

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           E+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +V+L++GD +E+  LL   
Sbjct: 146 EEVERLRHSATMSLLTRRDVIVVASVSCIYGLGTPQEYIDRMVRLRVGDEIERDLLLRRF 205

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QY R D+   RGTFRV GD++E+FP + E++A RV MFG++IE ++  +PLTG+ +R
Sbjct: 206 VDVQYTRNDLAFTRGTFRVRGDTVEVFPVY-EELAVRVEMFGDEIERLTYLHPLTGEIVR 264

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            VE I ++  +HYV     +  A+  I+ EL  RL  +E++G+LLEAQRL  R TYD+EM
Sbjct: 265 EVEEIFVFPATHYVAGPERMERAIAGIEAELAERLATMERQGKLLEAQRLRMRTTYDIEM 324

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           +   G C  IENYSR++ GR  G  P TL +Y P+D LL +DESHVT+PQI GMY GD  
Sbjct: 325 MRQVGFCSGIENYSRHIDGREAGTAPHTLLDYFPDDFLLVIDESHVTVPQIGGMYEGDMS 384

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L E+GFRLPS MDNRPLR+EE+      T+ +SATPG +EL +  G +VEQIIRPT
Sbjct: 385 RKRNLVEHGFRLPSAMDNRPLRWEEFLERIGQTVYLSATPGPYELGRADG-VVEQIIRPT 443

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP V ++  + Q++D+  EI L A++  R+L+T LTK+M+EDLT+YL E  IRVRY+
Sbjct: 444 GLLDPEVVLKPTKGQIDDLVHEIRLRAERDERVLVTTLTKKMSEDLTDYLLELGIRVRYL 503

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSEV TL R+E++ +LR G FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLI
Sbjct: 504 HSEVDTLRRVELLTELRRGDFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSDKSLI 563

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+ +V +YAD IT S++ AIDET RRREKQ+ +N +  ++PQ +++K++++
Sbjct: 564 QTIGRAARNVSGQVHMYADKITPSMRHAIDETNRRREKQMAYNAERGLDPQPLRKKVVDI 623

Query: 733 IDPILLEDAATTNISID----------------------------AQQLSLSKKKGKAHL 764
           +D ++ E A    I                               A+   +   +    +
Sbjct: 624 LDDMVRESAEGELIGGGGRSQSRGKAPVPGMKSRGGAQGTVGRYAAELAGMPSHELAQLI 683

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQG 801
           + L  QMH AA  L FE AAR+RDEI  LK      G
Sbjct: 684 RQLDDQMHEAAKELQFELAARLRDEIAELKKELRGMG 720


>gi|302550666|ref|ZP_07303008.1| excinuclease ABC, B subunit [Streptomyces viridochromogenes DSM
           40736]
 gi|302468284|gb|EFL31377.1| excinuclease ABC, B subunit [Streptomyces viridochromogenes DSM
           40736]
          Length = 715

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/707 (49%), Positives = 481/707 (68%), Gaps = 40/707 (5%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++   + +   ++ + Y P+GDQPAAIA+L + I + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVSQIERTVAPIEVVSPYQPNGDQPAAIAELARRIQAGEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V LK+G+ +++ EL
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGEEIDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +P+TG
Sbjct: 182 LRRFVDIQYTRNDMAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPITG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I + E + ++  SHYV     +  A+  I++EL  RL ELEK+G+LLEAQRL  R TY
Sbjct: 241 EIISDDEQLYVFPASHYVAGPERMERAVNDIEKELGERLSELEKQGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EML   G+C  +ENYS +  GR PG PP TL +Y P+D LL +DESHVT+PQI  MY 
Sbjct: 301 DIEMLRQIGTCSGVENYSMHFDGRLPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG++E+ +  G +VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLKWEEFQGRIGQTVYLSATPGNYEMSRSDG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+
Sbjct: 420 IRPTGLVDPEVVVKPTEGQIDDLVHEIRQRTEKDERVLVTTLTKKMAEDLTDYFLELGIQ 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD IT +++ AI+ET RRREKQ+ +N +  I+PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADKITPAMEKAIEETNRRREKQIAYNTEQGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI--------------------------------------SIDA 750
           I +++  I  ED  T  +                                      S + 
Sbjct: 600 INDIVAQIAREDVDTEQLLGTGYRKGRKDGGGTKAPVPSLGGKAAEAGKSAKGKGRSKET 659

Query: 751 QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                   +    ++ L  +M  AA  L FE AAR+RDE+  +K   
Sbjct: 660 VPTDRPAAELAEQIEELTTRMRAAAAELQFEIAARLRDEVSEMKKEL 706


>gi|15893793|ref|NP_347142.1| excinuclease ABC subunit B [Clostridium acetobutylicum ATCC 824]
 gi|20532291|sp|Q97LQ2|UVRB_CLOAB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|15023364|gb|AAK78482.1|AE007565_1 Excinuclease ABC subunit B (helicase subunit of the DNA excision
           repair complex) [Clostridium acetobutylicum ATCC 824]
 gi|325507916|gb|ADZ19552.1| excinuclease ABC subunit B [Clostridium acetobutylicum EA 2018]
          Length = 666

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/660 (52%), Positives = 475/660 (71%), Gaps = 2/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + P+GDQP AIA ++ GI +  K Q LLGVTGSGKTFTMA +IE +Q+P +
Sbjct: 1   MGTFKINSAFKPTGDQPQAIASIVNGIKNNNKWQTLLGVTGSGKTFTMANIIEKVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF++FFP ++VEYFVSYYDYYQPEAYV +TDTYIEK++SIN++ID+
Sbjct: 61  VIAHNKTLAAQLCSEFRDFFPDSSVEYFVSYYDYYQPEAYVAQTDTYIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D IVV+SVSCIYG+G+ E Y ++ + L+ G + ++ E+L  LV+ QY
Sbjct: 121 LRHSATSALFERRDVIVVASVSCIYGLGNPEEYKKLSISLRTGMNKDRDEILEKLVEMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R +I  +RGTF+V GD+I+IFP+     A RV +FG++I++I EF  LTG  I+ ++  
Sbjct: 181 ERNEINFVRGTFKVKGDTIDIFPAGSTSSAIRVELFGDEIDKIKEFDVLTGNTIKTLKHT 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+ T    +  A+K I+ EL+ RL EL  E +LLEAQRL+QR  +D+EM+   G
Sbjct: 241 VIFPASHFATSSDKIEEAIKQIEIELEERLRELNSEDKLLEAQRLKQRTNFDIEMMREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR + GR  GEPP TL +Y P+D L+F+DESHVT+PQ+  MY GD  RK +L
Sbjct: 301 YCTGIENYSRIMDGRQKGEPPKTLIDYFPDDFLMFIDESHVTLPQVKAMYGGDRSRKNSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL+F+E+       + VSATP ++EL+  +  I EQ+IRPTGL+DP
Sbjct: 361 VDYGFRLPSAYDNRPLKFDEFEEKINQIVFVSATPSNYELDHSEN-IAEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R  + Q++D+Y EI    Q G RIL+T LTK+MAEDLT+YL +  I+  YMHS++ 
Sbjct: 420 EIEVRPTKGQIDDLYSEIKNTIQNGFRILVTTLTKKMAEDLTDYLKDLGIKTTYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++II+D+R G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TLERMKIIKDVRTGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  S+VI+Y D IT ++  AI ET RRR+ Q+E+N+K+ I P ++K+ + +VI    
Sbjct: 540 AARNSESRVIMYGDKITDAMGKAISETKRRRKIQIEYNEKNGIKPTTIKKAVRDVIGISE 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + +  T   S+D + +    K     +K   K+M  AA  L FE+AA  RD++  LK   
Sbjct: 600 VAEGKTEYKSMD-EAVKADNKNIDKLIKEFEKEMKEAAKELQFEKAAYFRDKVNELKKKL 658


>gi|239917621|ref|YP_002957179.1| Excinuclease ABC subunit B [Micrococcus luteus NCTC 2665]
 gi|281413888|ref|ZP_06245630.1| excinuclease ABC subunit B [Micrococcus luteus NCTC 2665]
 gi|261260087|sp|P10125|UVRB_MICLC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|239838828|gb|ACS30625.1| Excinuclease ABC subunit B [Micrococcus luteus NCTC 2665]
          Length = 709

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/700 (50%), Positives = 475/700 (67%), Gaps = 36/700 (5%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
              ++ +  F++ + Y PSGDQP AIA+L + + + EK  +L+G TG+GK+ T A ++E 
Sbjct: 5   QKINRVVAPFEVISPYQPSGDQPKAIAELAERVEAGEKDVVLMGATGTGKSATTAWLVER 64

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +QRP +VM  NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSI
Sbjct: 65  LQRPTLVMVQNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSI 124

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           NE+++R+RHSAT +LL R D IVV++VSCIYG+G+ E Y + +V L+ G  +++  LL  
Sbjct: 125 NEEVERLRHSATNALLTRRDVIVVATVSCIYGLGTPEEYIEQMVTLRRGAEMDRDVLLRR 184

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
            V+ QY R D+   RGTFRV GD++EI P + E++A R+  FG++IE I   +PLTGQ +
Sbjct: 185 FVQMQYVRNDVDFHRGTFRVRGDTVEIIPMY-EELAVRIEFFGDEIESIQTLHPLTGQVV 243

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
           R  E + I+  SHYV     +  A+  I++EL+ RL ELE + +LLEAQRL  R TYDLE
Sbjct: 244 REEEEMYIFPASHYVAGDERMGRAITTIEDELRERLQELESQDKLLEAQRLRMRTTYDLE 303

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M++  G C  IENYSR++ GR  G  P  L +Y P+D LL VDESHVTIPQI  MY GD 
Sbjct: 304 MMQQMGYCNGIENYSRHIDGRPAGSAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYEGDM 363

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK TL E+GFRLPS MDNRPL+++E+      T+ +SATPG++EL Q  G  VEQIIRP
Sbjct: 364 SRKRTLVEHGFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGAYELGQADG-YVEQIIRP 422

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGLVDP V ++    Q++D+ ++I +   +  R+L+T LTKRMAEDLT+YL E  ++V Y
Sbjct: 423 TGLVDPQVVVKPTEGQIDDLLEQIRVRTAKDERVLVTTLTKRMAEDLTDYLLEAGVKVEY 482

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS+V TL R+E++R+LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSL
Sbjct: 483 LHSDVDTLRRVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSL 542

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARNV+ +V +YA  +T S++ AI+ET RRR  Q+ +N++H I+PQ ++++I +
Sbjct: 543 IQTIGRAARNVSGEVHMYAGNVTDSMRRAIEETERRRAVQIAYNEEHGIDPQPLRKRIAD 602

Query: 732 VIDPILLEDAATTN----------------------------------ISIDAQQLSLSK 757
           + D +  EDA T +                                   +      SL  
Sbjct: 603 ITDQLAREDADTADFLKGMGGVKSGFDFGMGHRGLSSLDRAPATGEGAAAPAVDPASLPA 662

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           K     ++ + +QMH AA +L FE AAR+RDE+  LK   
Sbjct: 663 KDLADLIEQMSQQMHQAAADLQFELAARLRDEVGELKKEL 702


>gi|295106063|emb|CBL03606.1| Excinuclease ABC subunit B [Gordonibacter pamelaeae 7-10-1-b]
          Length = 722

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/666 (53%), Positives = 496/666 (74%), Gaps = 2/666 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T  ++ + Y PSGDQP AI +L +G+    + Q LLGVTGSGKTFTMAK IEA+Q+P +V
Sbjct: 30  TPLKVVSPYEPSGDQPQAIEKLARGVEEGLRYQTLLGVTGSGKTFTMAKTIEAVQKPTLV 89

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQL SE K FFP+N+V YFVSYYDYYQPEAYVP +DT+IEK++SINE+++++
Sbjct: 90  MAPNKTLAAQLASELKEFFPNNSVVYFVSYYDYYQPEAYVPSSDTFIEKDASINEEVEKL 149

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R DCIVV+SVSCIYGIGS   Y+ M V +     +++ +++  L+  QY 
Sbjct: 150 RHAATSALLSRRDCIVVASVSCIYGIGSPMDYAGMAVFVDKQKEMDRDDVIHELIDIQYD 209

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D  + RGTFRV GD++++FP + ++   R+  +G++IE I+E   +TG+ +   E + 
Sbjct: 210 RNDYELKRGTFRVRGDNLDVFPPYADN-PLRIEFWGDEIERIAEVDNVTGEVVNEFEALP 268

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SHYV  RP ++ A+  I++EL+ RL + ++EG+LLEAQRLE R  YDLEM+ET G 
Sbjct: 269 IWPASHYVATRPKMDRALGTIRDELRERLQQFKEEGKLLEAQRLEMRTNYDLEMMETMGF 328

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR++ GR+PGEPP TL +Y P+D L  +DESHVT+PQI GM+ GD  RK TLA
Sbjct: 329 CSGIENYSRHIDGRSPGEPPYTLIDYFPKDFLCIIDESHVTVPQIRGMHEGDRSRKITLA 388

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPSC+DNRPLRF+E+    P  + VSATPG +E +  Q   VEQIIRPTGL+DP 
Sbjct: 389 EHGFRLPSCLDNRPLRFDEFEERIPQFVYVSATPGDYEQKVSQQQ-VEQIIRPTGLLDPE 447

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R + +Q++D+ DE    A +  R+L+T LTK+MAEDLT++L ++ ++ RYMHS++ T
Sbjct: 448 IIVRGSASQIDDIIDESKDRAARDERVLITTLTKKMAEDLTDHLLDQGVKARYMHSDIAT 507

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER+EI+R+LR GKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR+  SLIQTIGRA
Sbjct: 508 LERVEILRELRQGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNHRSLIQTIGRA 567

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV+ +VI+YAD IT S+ LAIDET RRR  Q+++N+ H I PQ++++ I +++D +  
Sbjct: 568 ARNVSGQVIMYADKITDSMALAIDETKRRRTIQMQYNEDHGIEPQTIRKAINDIMDYVTD 627

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           E   TT   ++A+  +LS+++    + S+  +M  A+ ++++EEAAR+RD++ +L++S  
Sbjct: 628 EVGNTTAEQVNAELAALSREEVLRIIASMEDEMASASQSMDYEEAARLRDQVVKLRASVE 687

Query: 799 FQGLDD 804
               +D
Sbjct: 688 GASEED 693


>gi|293380197|ref|ZP_06626279.1| excinuclease ABC subunit B [Lactobacillus crispatus 214-1]
 gi|290923241|gb|EFE00162.1| excinuclease ABC subunit B [Lactobacillus crispatus 214-1]
          Length = 681

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/658 (50%), Positives = 464/658 (70%), Gaps = 3/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + +P +V+ 
Sbjct: 10  FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIAKLNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L+ERND +VV+SVSCIYG+G  + Y++ ++ +  G+  ++  LL  LV  QY R 
Sbjct: 130 ATTSALMERNDVVVVASVSCIYGLGDPKEYARSVLMIHEGEEYDRNTLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+   + A+ +  FG++I+ I E   LTG+ I   E+I ++
Sbjct: 190 DIDFQRGRFRVRGDVVEVFPAGNSNHAYPIEFFGDEIDRIVEVDSLTGEVIGERESISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L  A+  I +E+K+++ + E EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNDEQLRRALGAISKEMKLQVKKFEGEGKLLEAERIKQRTTYDMEMMGEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDRNRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVNQILYVSATPGDYELERT-DHKVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVGEINKRIDRHERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+QT+GRAAR
Sbjct: 489 RMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL--L 738
           N N +VI+YADTIT S++ AI  T RRR+ Q+E NK+H I P+++ + I +VI       
Sbjct: 549 NANGEVIMYADTITDSMRAAIKATKRRRKIQMEFNKEHGITPKTIIKPIQDVISITKPSS 608

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           E    ++   D     L+ K+ K  + +L++QM  AA  L+FEEAA +RD I  L+ S
Sbjct: 609 EKEEKSDSFADLNFDELTAKQKKTMISNLQEQMQEAAKKLDFEEAANLRDAIMELQKS 666


>gi|70727132|ref|YP_254046.1| excinuclease ABC subunit B [Staphylococcus haemolyticus JCSC1435]
 gi|90111053|sp|Q4L4I5|UVRB_STAHJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|68447856|dbj|BAE05440.1| exinuclease ABC subunit B [Staphylococcus haemolyticus JCSC1435]
          Length = 661

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/657 (52%), Positives = 471/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +++ P GDQP AI +++KG+   ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKLNSEFDPQGDQPQAIEKIVKGVKEGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 126 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYSR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ IR  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVIREREHFAI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    +  A++ I++EL+ RL EL+ E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKMKIAIERIEKELEERLKELKDENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQI GM+ GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMFNGDRARKQVLVD 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS MDNRPL+FEE+       + VSATPG +E+E    +I EQIIRPTGL+DP +
Sbjct: 366 HGFRLPSAMDNRPLKFEEFEQKTNQLVYVSATPGPYEIEHTDEMI-EQIIRPTGLLDPKI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R  + Q++D+  EI     +  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 DVRPTKNQIDDLLSEIQERIDRDERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDVVVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD IT S+Q A+DET RRR+ Q  HN+K+ I P+++ +KI +VI   +  
Sbjct: 545 RNEKGEVIMYADKITDSMQYALDETQRRRDIQTAHNEKYGITPKTINKKIHDVISATVDN 604

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D        +  +  ++KK+ +  ++++ K+M  AA +L+FE+A  +RD +  LKS 
Sbjct: 605 DETNEKQQTELPK-KMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKSE 660


>gi|159029997|emb|CAO90377.1| uvrB [Microcystis aeruginosa PCC 7806]
          Length = 667

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/664 (53%), Positives = 464/664 (69%), Gaps = 4/664 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T FQ+Q  + P+GDQPAAI +L+  + ++ + Q LLG TG+GKTFT+A VIE + RP +
Sbjct: 1   MTAFQLQAPFQPTGDQPAAIDKLVDSLQNQHRFQTLLGATGTGKTFTIAAVIEKIGRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK SSIN++ID 
Sbjct: 61  VLAHNKTLAAQLCNELRQFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKSSSINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  + L +G   +Q++LL +LV  QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGMPAEYLKAAISLTVGQEFDQRQLLRALVSVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RG FR+ GD +EI P++ ED   ++  FG++IE I    PLTG+ ++ +E I
Sbjct: 181 NRNDLELTRGRFRLKGDILEIVPAY-EDRVIKIDFFGDEIESIRYLDPLTGEVLQKLERI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP   L  A + IK EL  RL+ELEK G+LLEAQRL+QR  YDLEML+  G
Sbjct: 240 SIYPARHFVTPEERLEVACRDIKTELDNRLLELEKAGKLLEAQRLDQRTRYDLEMLQEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  GEPP  L +Y P++ LL VDESHV++PQI GMY GD  RK  L
Sbjct: 300 YCNGVENYSRHLAGRLAGEPPECLVDYFPQNWLLVVDESHVSVPQIRGMYNGDQSRKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+       I VSATPG WELEQ +  IVEQIIRPTG++DP
Sbjct: 360 IDHGFRLPSAADNRPLKSEEFWQKVNQCIFVSATPGDWELEQSENHIVEQIIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    QV+D+  EI    +   R+L+T LTKRMAEDLTEYL ER I+VRY+HSE++
Sbjct: 420 EIFVRPTEGQVDDLLGEIKERVRLNERVLITTLTKRMAEDLTEYLQERGIKVRYLHSEIQ 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           +++RIEII+DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR+  SLIQTIGR
Sbjct: 480 SIQRIEIIQDLREGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRATRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR++  + ILY D +T S+  AI+ET RRR  Q E+N+KH I PQ + ++    I   L
Sbjct: 540 AARHIRGQAILYGDNLTDSMINAIEETKRRRAIQEEYNQKHGIIPQPIVKRSSNSILAFL 599

Query: 738 LEDAATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  +  +D        LS ++    ++ L  QM  AA NL FE AA+ RD IK+L+
Sbjct: 600 DISRRLNSQQLDQVCENIEELSLEQIPELIQQLEAQMKEAAKNLEFEAAAKYRDRIKQLR 659

Query: 795 SSPY 798
               
Sbjct: 660 DKLL 663


>gi|251772139|gb|EES52709.1| excinuclease ABC, B subunit [Leptospirillum ferrodiazotrophum]
          Length = 698

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/674 (55%), Positives = 483/674 (71%), Gaps = 8/674 (1%)

Query: 135 SKDITF-----FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI 189
           S DIT      F++ +DY P GDQ  AI +L +G+ +RE+ Q LLGVTGSGKTFT+A VI
Sbjct: 2   SGDITPVRQGRFRLVSDYAPCGDQGKAIDRLTRGVSNRERFQTLLGVTGSGKTFTVANVI 61

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
               +PA+V+APNK LAAQLY EF+ FFP N VEYFVSYYDYYQPEAY+P TDTYIEK+S
Sbjct: 62  ANAGKPALVLAPNKTLAAQLYREFREFFPDNRVEYFVSYYDYYQPEAYLPATDTYIEKDS 121

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELL 309
           +IN+ IDRMRHSAT +LLER D IVV+SVSCIYG+GS +SY +M + L+ G  + ++ LL
Sbjct: 122 AINDLIDRMRHSATTALLERLDTIVVASVSCIYGLGSPDSYLKMHLYLEQGMEIRRQRLL 181

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369
             LV+ QY+R +I   RGTFRV GD ++IFPS  E+ A RV  +G+ +E I E  PLTG+
Sbjct: 182 ERLVEIQYERNEIDFHRGTFRVKGDVVDIFPSSYEERALRVEFWGDTVERIREIDPLTGK 241

Query: 370 KIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD 429
           ++  V +I IY  +HYV P   L  A+  I+EEL  R+    K  +L+EAQR+EQR  +D
Sbjct: 242 ELLQVPSIIIYPATHYVLPPDKLEGALAAIEEELAERIDYFRKNNKLVEAQRIEQRTLFD 301

Query: 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG 489
           LEM+   G C  IENYSR+L+GR PGEPPPTLF+Y P D LL +DESHV +PQ+ GMY+G
Sbjct: 302 LEMIREVGFCHGIENYSRHLSGRAPGEPPPTLFDYFPPDYLLVIDESHVAVPQVGGMYQG 361

Query: 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
           D  RK +L ++GFRLPS  DNRPL  EE+  +    I VSATPG +EL   +G+ VEQ+I
Sbjct: 362 DHSRKKSLVDFGFRLPSAFDNRPLTAEEFEQVMKQVIFVSATPGPYELAASKGVTVEQVI 421

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           RPTGLVDP VE+  A  QV+ +  E+     QG R+L+T LTKRMAE+LTEYL ER +RV
Sbjct: 422 RPTGLVDPEVEVVPAVHQVDHLLGEVRKTVAQGDRVLVTTLTKRMAENLTEYLEERGVRV 481

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           RY+HSE+ T+ER+EIIRDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ 
Sbjct: 482 RYLHSEIDTIERMEIIRDLRRGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSRR 541

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           SLIQT GRAARN+  +VI YAD++T S++ AIDE  RRR  QL +NK++ I PQS+++ I
Sbjct: 542 SLIQTSGRAARNLRGRVIFYADSVTGSMKEAIDEMNRRRSIQLAYNKENGIVPQSIRKNI 601

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            E +  +   D  T  ++ + ++  ++   G A +   R +M  AA+ L+FE+AA  RD 
Sbjct: 602 PEALYHVSESDYVTVEMASEEREEVVAHSLGDAEI---RARMVEAAEALDFEKAAYFRDL 658

Query: 790 IKRLKSSPYFQGLD 803
           ++     P  +G+D
Sbjct: 659 LRARGERPSGEGID 672


>gi|297569470|ref|YP_003690814.1| excinuclease ABC, B subunit [Desulfurivibrio alkaliphilus AHT2]
 gi|296925385|gb|ADH86195.1| excinuclease ABC, B subunit [Desulfurivibrio alkaliphilus AHT2]
          Length = 670

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/664 (55%), Positives = 466/664 (70%), Gaps = 4/664 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + T++ P+GDQP AI  L +G++     Q+LLGVTGSGKTFTMA+VI    RPA++
Sbjct: 5   NPFALITEFTPAGDQPRAIELLSRGVNQGATHQVLLGVTGSGKTFTMAQVIAETGRPALI 64

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLYSEFK  FPHNAVEYFVSYYDYYQPEAY+P++DTYIEK+S+IN+ ID+M
Sbjct: 65  LAPNKTLAAQLYSEFKELFPHNAVEYFVSYYDYYQPEAYIPQSDTYIEKDSAINDTIDKM 124

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH ATR+LL R D I+V+SVSCIYG+GS E Y  M + LK+G+     E+   LV   Y+
Sbjct: 125 RHGATRALLTRRDVIIVASVSCIYGLGSPEEYLNMHLALKVGEDYPPVEIQRRLVHMLYE 184

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD IEIFP H E+ A RV +FG+ IE I    PL G      +   
Sbjct: 185 RNDYSFHRGTFRVRGDVIEIFPVHEEEQALRVELFGDTIEAIRVVDPLRGVVHAEQDEAT 244

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++  SH+VT R     A+K IK ELK RL ELE  GRLLEAQRLEQR  +DLEML   G 
Sbjct: 245 VFPGSHFVTSRERQQQAVKTIKAELKERLRELESAGRLLEAQRLEQRTNFDLEMLAELGY 304

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+ TGR PG PPPTL +Y P+D LL VDESHV+IPQ+ GMYRGD  RK TL 
Sbjct: 305 CHGIENYSRHFTGRPPGAPPPTLLDYFPDDYLLLVDESHVSIPQVRGMYRGDRSRKETLV 364

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL F+E+       I VSATPG +ELE  QG +VEQIIRPTGL+DP 
Sbjct: 365 EYGFRLPSALDNRPLMFDEFAARTNQAIYVSATPGDYELEMAQGRVVEQIIRPTGLMDPA 424

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R A  QV+D+  EI   A++   +L+T LTKRMAEDL EY     +RVRY+H+++KT
Sbjct: 425 IEVRPASGQVDDLLAEIRHRAERNEAVLVTTLTKRMAEDLCEYYANLGVRVRYLHADIKT 484

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER+E++RDLR  ++DVLVGINLLREGLD+PE  LVA+LDADKEGFLRS+ SLIQT GRA
Sbjct: 485 LERMELLRDLRRREYDVLVGINLLREGLDLPEVSLVAVLDADKEGFLRSERSLIQTCGRA 544

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN +  VILY D +++++   I ET RRR  Q E+N++H I P +++ +I +++  I  
Sbjct: 545 ARNADGLVILYGDQLSEAMARTIAETNRRRAIQAEYNREHGITPATIRSRIKDIMASIYE 604

Query: 739 EDAATTNIS----IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +D AT  +      + Q +  S+ + +  ++ L K M  AA  L FE+AA +RD IK LK
Sbjct: 605 QDYATVEVPEQAVAEEQPVFRSRDELRKEIRQLEKAMQEAARELAFEDAAELRDRIKVLK 664

Query: 795 SSPY 798
               
Sbjct: 665 EQEL 668


>gi|284047894|ref|YP_003398233.1| excinuclease ABC, B subunit [Acidaminococcus fermentans DSM 20731]
 gi|283952115|gb|ADB46918.1| excinuclease ABC, B subunit [Acidaminococcus fermentans DSM 20731]
          Length = 664

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/659 (53%), Positives = 468/659 (71%), Gaps = 2/659 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++   + P+GDQP AI  L +G+      Q+LLG TG+GKT+T+A+VI+ +Q+P +V+
Sbjct: 2   PFEIHAPFAPAGDQPEAIDALARGVEEGMHTQVLLGATGTGKTYTIAQVIQKVQKPTLVI 61

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQL SEFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+SS+N++ID++R
Sbjct: 62  AHNKTLAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYIPATDTYIEKDSSMNDEIDKLR 121

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L+ER D IVV+SVSCIYG+G  + Y   ++ L+IG +VE+  +L  LVK +Y R
Sbjct: 122 HSATSALMERRDVIVVASVSCIYGLGGPKDYYDSVLSLRIGQTVERDAILEKLVKIRYDR 181

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ + RG FRV GD IE+ P+   + A R+ +FG++++ + E   LTGQ +     + I
Sbjct: 182 NDLSLERGKFRVRGDVIEVVPASYGEKAIRIELFGDEVDSLEEIDVLTGQVVDKRTHVAI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SHYVT    L  A K I+ EL  RL  L+ E +LLEAQRLEQR  YDLEM++  G C
Sbjct: 242 FPASHYVTSDENLERARKDIRRELNERLKVLKGENKLLEAQRLEQRTNYDLEMMQELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LTGR PGEPP TL  Y P+D L  +DESHVT+PQ+  MY GD  RK  L +
Sbjct: 302 SGIENYSRHLTGRKPGEPPFTLVNYFPKDFLTVIDESHVTLPQLRAMYAGDRARKEQLVK 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL F+E+   R   I VSATPGS+E+E     +VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPSAIDNRPLTFDEFQAQRGQIIYVSATPGSYEMETTDQ-VVEQIIRPTGLLDPKI 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + Q++D+  EI+    Q  R+L+T LTK+MAEDLTEYL    +RVRY+HS++ T+
Sbjct: 421 EVRPIKGQIDDLLGEIHKVTAQKERVLVTTLTKKMAEDLTEYLTTAGVRVRYLHSDIATI 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EII DLR GKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T++IQTIGRAA
Sbjct: 481 ERAEIIHDLRAGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTAMIQTIGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN + +VI+YADTIT S++ AI ET RRREKQ   NK H I P+++++K++++I    +E
Sbjct: 541 RNAHGRVIMYADTITGSMERAISETARRREKQEAFNKVHGIVPRTIQKKVVDLIKLTKVE 600

Query: 740 DAATTNISIDAQ-QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +  T      A+    L  ++    ++ + K+M  AA  L+FE AA  RD++  LK   
Sbjct: 601 EDNTAAKGYTAKTVKKLKPRELDKQIRLMEKKMKEAAKQLDFELAAEYRDQLILLKGEQ 659


>gi|313904913|ref|ZP_07838284.1| excinuclease ABC, B subunit [Eubacterium cellulosolvens 6]
 gi|313470170|gb|EFR65501.1| excinuclease ABC, B subunit [Eubacterium cellulosolvens 6]
          Length = 661

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/658 (53%), Positives = 472/658 (71%), Gaps = 3/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L+ G  S  + + LLGVTGSGKTFTMA VI+ +Q+P +++A
Sbjct: 3   FKLHSEYKPTGDQPQAIRELVDGFRSGNQCETLLGVTGSGKTFTMANVIQELQKPTLIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DTYI K+SS NE+ID++R 
Sbjct: 63  HNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIAKDSSRNEEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ER D IV+SSVSCIYG+GS + Y +MI+ L+ G   ++ +++ +L+  QY+R 
Sbjct: 123 SATSSLIERKDVIVISSVSCIYGLGSPKDYEKMIIPLRPGMQKDRDDVIRALIDIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +I   RGTFRV GD IEI P++  + A RV  FG++I+ I+    LTG+  +++  + I 
Sbjct: 183 EIDFHRGTFRVHGDVIEIVPANESETAIRVEFFGDEIDRITCVDILTGEVKQDLNFVSIA 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+ T++ A + I+ EL++R+ E + EG+LLEAQR+E+R  +D+EML  TG C 
Sbjct: 243 PASHYVVPQETIDRATRDIEAELELRVGEFKGEGKLLEAQRIEERTNFDIEMLRETGVCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++G  PGEPP TL ++ P+D L+ VDESH TIPQI  MY GD  RK+TL +Y
Sbjct: 303 GIENYSRHMSGLKPGEPPYTLMDFFPDDFLIIVDESHRTIPQIGAMYAGDRSRKSTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+       + VSATPG +E E  + +  EQIIRPTGL+DP V+
Sbjct: 363 GFRLPSALDNRPLSFDEFEERIDQILFVSATPGEYEAEH-ELLRAEQIIRPTGLLDPKVD 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI        ++L+T LTKRMAEDLT+Y+ E  IRV Y+HS++  LE
Sbjct: 422 VRPVEGQIDDLIGEIKKEVAAHHKVLVTTLTKRMAEDLTDYMKEAGIRVNYLHSDIDALE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +IIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RAKIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S++ AI ET RRR  Q  +N++H+I PQ++++++ E+I   +  D
Sbjct: 542 NSEGHVIMYADNMTDSMRNAISETERRRAVQELYNEEHHITPQTIQKRVGELI--SISRD 599

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
            A     ++    S++KK+    +  + KQM  AA  LNFE AA++RD +K LK +  
Sbjct: 600 VAARERKLEKDPESMTKKELTKLIADVEKQMKAAAAELNFEMAAQLRDRMKELKQTLL 657


>gi|119717061|ref|YP_924026.1| excinuclease ABC subunit B [Nocardioides sp. JS614]
 gi|119537722|gb|ABL82339.1| Excinuclease ABC subunit B [Nocardioides sp. JS614]
          Length = 706

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/697 (50%), Positives = 475/697 (68%), Gaps = 29/697 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + +  + +  F++ +DY PSGDQPAAI ++ + + +  +  +LLG TG+GKT T+A V
Sbjct: 2   RPVTDLERRVAPFKVVSDYQPSGDQPAAIKEITQRLRAGVQDVVLLGATGTGKTATVAWV 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
            E +QRP +VM PNK LAAQ  +E +  FP NA+EYFVSYYDYYQPEAYVP+TDTYIEK+
Sbjct: 62  AEQVQRPMLVMQPNKTLAAQFANELRQLFPDNAIEYFVSYYDYYQPEAYVPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D IVVS+VSCIYG+G+ + Y   +V+LK+G+  ++  +
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVIVVSTVSCIYGLGTPQEYVDRMVRLKVGEEHDRDSI 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV+ QY R D+   RGTFRV GD++EIFP + E++A R+  FG++IE +   +P+TG
Sbjct: 182 LRRLVEIQYTRNDMTFTRGTFRVRGDTLEIFPVY-EEMAIRIEFFGDEIERMMTLHPVTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + +   E + I+  +HYV     +  A++ I+ EL+ +L   E++G+LLEAQRL  R TY
Sbjct: 241 EVVTEDEELYIFPATHYVAGPERMERAIRGIELELEDQLATFERQGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   GSC  IENYS ++ GR  G  P  L +Y PED +L +DESHV +PQI GMY 
Sbjct: 301 DVEMMRQVGSCSGIENYSMHIDGRTRGSAPNCLLDYFPEDFVLVIDESHVAVPQIGGMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L ++GFRLPS MDNRPLR+EE+      TI +SATPG +EL++  G  VEQI
Sbjct: 361 GDMSRKRNLVDHGFRLPSAMDNRPLRWEEFLDRIGQTIYLSATPGDYELDKVGGDTVEQI 420

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++  + Q++D+  EINL  ++  R+L+T LTK+M+EDLT+YL +  +R
Sbjct: 421 IRPTGLVDPEVVVKPTKGQIDDLIHEINLRVEKNERVLVTTLTKKMSEDLTDYLLDAGVR 480

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            RY+HSEV TL+RIE++RDLRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 481 TRYLHSEVDTLKRIELLRDLRLGQYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSD 540

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +V +YAD IT S++ AIDET RRR KQ+ +N  H I+P  +++K
Sbjct: 541 KSLIQTIGRAARNVSGQVHMYADRITPSMEAAIDETNRRRAKQVAYNTAHGIDPTPLRKK 600

Query: 729 IMEVIDPILLEDAATTNI----------------------------SIDAQQLSLSKKKG 760
           I ++ D +  E+ +T  +                               A    L   + 
Sbjct: 601 IADITDMLAREEESTQELLDTWQHLDPKHRKAPVPGLSRIAGGEAGQHTADLAGLPSAEL 660

Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
              ++ L  QM  AA  L+FE AAR+RDEI  LK   
Sbjct: 661 AQLIQELTDQMKGAAAELHFEVAARLRDEIGDLKKEL 697


>gi|116074361|ref|ZP_01471623.1| excinuclease ABC subunit B [Synechococcus sp. RS9916]
 gi|116069666|gb|EAU75418.1| excinuclease ABC subunit B [Synechococcus sp. RS9916]
          Length = 678

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/679 (52%), Positives = 464/679 (68%), Gaps = 16/679 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +   Y P GDQP AIAQL++G++  ++ Q LLG TG+GKTFTMA VI    RPA+
Sbjct: 1   MPAFDLSAPYTPKGDQPTAIAQLVEGVNGGQRYQTLLGATGTGKTFTMANVIAKTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFPHNAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPHNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G+S++ +  L  LV  QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPSEYLKASVKFQVGESLDLRGSLRDLVNNQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D  I RG FRV GD +EI P++ ED   R+ +FG+++E I    P TG+ ++++E I
Sbjct: 181 SRNDTDITRGRFRVRGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSMEAI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP+  L+TA+K I+ ELK RL  L  EG+LLEAQRLEQR TYDLEML   G
Sbjct: 240 NIYPAKHFVTPKERLDTAIKDIRSELKERLDFLNTEGKLLEAQRLEQRTTYDLEMLGQVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L GR PG  P  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLAGREPGTAPECLIDYFPDDWLLIVDESHVTCSQLQAMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ +E+      T+ VSATPG+WE+E   G + EQ+IRPTG++DP
Sbjct: 360 IDHGFRLPSAADNRPLKGDEFWTKARQTVFVSATPGNWEMEVSSGQVAEQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    QV+D+  EI   A++  R+L+T LTKRMAEDLT+YL E  +RVRY+HSE+ 
Sbjct: 420 VVEVRPTTGQVDDLLGEIRSRAKKQQRVLVTTLTKRMAEDLTDYLAENEVRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---- 733
           AAR+V    +LYAD +T S+  AI+ET RRR+ Q  +N KH I P +  +K    I    
Sbjct: 540 AARHVEGVALLYADNMTDSMAKAIEETERRRKIQQTYNDKHGIVPTAAGKKASNSILSFL 599

Query: 734 -----------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                      D  L++ A     +I+     ++       +  L  +M  AA  L+FEE
Sbjct: 600 ELSRKLKTEGPDADLVQVAGQAVKAIEDDSEGMALDALPELIDQLEVRMKEAAKKLDFEE 659

Query: 783 AARIRDEIKRLKSSPYFQG 801
           AA +RD IK+L+     +G
Sbjct: 660 AANLRDRIKQLRQKLVGKG 678


>gi|329940834|ref|ZP_08290114.1| excinuclease ABC subunit B [Streptomyces griseoaurantiacus M045]
 gi|329300128|gb|EGG44026.1| excinuclease ABC subunit B [Streptomyces griseoaurantiacus M045]
          Length = 728

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/714 (49%), Positives = 479/714 (67%), Gaps = 45/714 (6%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
               ++   + +  F++ + Y PSGDQP AIA+L + I + EK  +LLG TG+GK+ T A
Sbjct: 8   DMRPVSTIERTVAPFEVVSPYRPSGDQPTAIAELERRIRAGEKDVVLLGATGTGKSATTA 67

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            +IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIE
Sbjct: 68  WMIEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIE 127

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+SSINE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +V L++GD +++ 
Sbjct: 128 KDSSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVPLRVGDEIDRD 187

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +LL   V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PL
Sbjct: 188 QLLRRFVDIQYTRNDMAFARGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPL 246

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG+ I + E + ++  SHY+     +  A+  I++EL+ RL EL+++G+LLE+QRL  R 
Sbjct: 247 TGEIISDDEQLYVFPASHYIAGPERMERAINGIEKELEERLAELDRQGKLLESQRLRMRT 306

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
           TYD+EML   G+C  +ENYS +   R PG  P TL +Y PED LL +DESHVT+PQI  M
Sbjct: 307 TYDIEMLRQIGTCSGVENYSMHFDDRGPGTAPNTLLDYFPEDFLLVIDESHVTVPQIGAM 366

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           Y GD  RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG++EL +  G  VE
Sbjct: 367 YEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYLSATPGTYELSRGDGH-VE 425

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           QIIRPTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  
Sbjct: 426 QIIRPTGLVDPEVVVKPTEGQIDDLVHEIRTRTEKDERVLVTTLTKKMAEDLTDYFVELG 485

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           I+VRY+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLR
Sbjct: 486 IQVRYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLR 545

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S TSLIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +N  H I+PQ ++
Sbjct: 546 SGTSLIQTIGRAARNVSGQVHMYADKITPAMERAIDETNRRREKQIAYNTAHGIDPQPLR 605

Query: 727 EKIMEVIDPILLEDAATTNI---------------------------------------- 746
           +KI +++  I  ED  T  +                                        
Sbjct: 606 KKINDIVAQIAREDVDTEQLLGTGYRKGKDGKGARTPVPALANHQVPGGPEAPAGKGRAA 665

Query: 747 ---SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
              S +              ++ +  +M  AA +L FE AAR+RDE+  +K   
Sbjct: 666 KGKSAETVPTDRPAAALAEQIEEMTTRMRAAAADLQFEIAARLRDEVSEMKKEL 719


>gi|289551380|ref|YP_003472284.1| Excinuclease ABC subunit B [Staphylococcus lugdunensis HKU09-01]
 gi|315658887|ref|ZP_07911754.1| excision endonuclease subunit UvrB [Staphylococcus lugdunensis
           M23590]
 gi|289180911|gb|ADC88156.1| Excinuclease ABC subunit B [Staphylococcus lugdunensis HKU09-01]
 gi|315496011|gb|EFU84339.1| excision endonuclease subunit UvrB [Staphylococcus lugdunensis
           M23590]
          Length = 661

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/657 (53%), Positives = 470/657 (71%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++++++ P GDQP AI +++KGI+  ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKLKSEFEPQGDQPQAIQKIVKGINEGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +E+ ELL  LV  QY R
Sbjct: 126 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMERTELLRKLVDVQYSR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ +R  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVLREREHFAI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    +  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTRDEKMQLAIQRIEKELEERLKELRAENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQI GMY GD  RK  L +
Sbjct: 306 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARKQVLVD 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL FEE+       + VSATPG +ELE     +VEQIIRPTGL+DP +
Sbjct: 366 HGFRLPSALDNRPLMFEEFEDKTKQLVYVSATPGPYELEHTDE-MVEQIIRPTGLLDPKI 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+V Y+HSE+KTL
Sbjct: 425 DVRPTENQIDDLLGEIQERVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTL 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS  SLIQTIGRAA
Sbjct: 485 ERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++ AIDET RRRE Q  HN+K+ I PQ++ ++I +VI   + E
Sbjct: 545 RNDRGEVIMYADKMTDSMKYAIDETQRRREIQTAHNEKYGITPQTIHKRIHDVISATV-E 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +  T           ++KK+ +  ++++ K+M  AA  L+FE+A  +RD +  LKS 
Sbjct: 604 NDETNAQEQTTVPKKMTKKERQKTIENIEKEMKKAAKELDFEKATELRDMLFELKSE 660


>gi|28199607|ref|NP_779921.1| excinuclease ABC subunit B [Xylella fastidiosa Temecula1]
 gi|182682349|ref|YP_001830509.1| excinuclease ABC subunit B [Xylella fastidiosa M23]
 gi|32130270|sp|Q87AT6|UVRB_XYLFT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238691089|sp|B2I8F9|UVRB_XYLF2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|28057722|gb|AAO29570.1| excinuclease ABC subunit B [Xylella fastidiosa Temecula1]
 gi|182632459|gb|ACB93235.1| excinuclease ABC, B subunit [Xylella fastidiosa M23]
 gi|307578632|gb|ADN62601.1| excinuclease ABC subunit B [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 669

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/663 (55%), Positives = 493/663 (74%), Gaps = 6/663 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ+ + Y PSGDQPAA+ +L+   H+    Q+LLGVTGSGKT+T+A V+E +Q+P +VM
Sbjct: 4   LFQLVSSYSPSGDQPAAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVM 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE I++MR
Sbjct: 64  APNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +AT++LL R+D +VV++VS IYG+G+ E Y  + + L +G+ +EQ++L+  L + QY R
Sbjct: 124 LAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLILSLGEHIEQRQLIRHLTELQYTR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++ ++RG+FRV G+ +++FP+  E  A R+ +F  +IE +S F PLTGQ +R ++   +
Sbjct: 184 NELDLVRGSFRVRGEVVDVFPAESEMEALRIELFDGEIESLSLFDPLTGQTVRKLQRFSV 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HY T R    +A+  IK+ELK  L  L    +L+EAQRL QR  +DLEM+   G C
Sbjct: 244 YPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LTG+ PGEPPPTLF+Y+P D+LL +DESHVTIPQI  M++GD  RK TL E
Sbjct: 304 NGIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEEW    P +I VSATPGS+E  +  G ++E ++RPTGL+DP +
Sbjct: 364 FGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYEFRESAGEVIELLVRPTGLIDPEI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR   TQV+D+  +IN   + G R+L+T LTKRMAE+LTEYL E+ IR+RY+HSE+ T+
Sbjct: 424 EIRPVATQVDDLISQINACIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEIDTV 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS +SLIQTIGRAA
Sbjct: 484 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP---- 735
           R+V  + ILYAD +T+S++ AIDET RRR+KQ E+N ++ I P+SV   I ++++     
Sbjct: 544 RSVRGRAILYADKVTRSMRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDG 603

Query: 736 --ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             +  +        + A   +L++ +  A +K L ++M+  A +L FE+AARIRD+I+RL
Sbjct: 604 VEVKSKGKGRRVDEVPADYGALNQAEIAAQMKVLEQKMYQHARDLEFEDAARIRDQIQRL 663

Query: 794 KSS 796
           + +
Sbjct: 664 REA 666


>gi|145595652|ref|YP_001159949.1| excinuclease ABC subunit B [Salinispora tropica CNB-440]
 gi|145304989|gb|ABP55571.1| Excinuclease ABC subunit B [Salinispora tropica CNB-440]
          Length = 701

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/690 (50%), Positives = 468/690 (67%), Gaps = 28/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +D+ P+GDQPAAI  L + +   ++  +LLG TG+GK+ T A +IE +QRP +V+A
Sbjct: 12  FQVVSDFQPAGDQPAAIDDLERRVRRGDRHTVLLGATGTGKSATTAWLIERLQRPTLVLA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK L AQL  EF    P+NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SSINE+++R+RH
Sbjct: 72  PNKTLCAQLAKEFSELLPNNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSINEEVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV++VS IYG+G+ E Y    V++  G  +++ +LL  LV  QY R 
Sbjct: 132 SATMSLLTRRDVVVVATVSAIYGLGTPEEYLDRAVRVVTGQELDRDQLLRRLVDIQYARN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P++ E++A R+ +FG+++E +    PLTG  +R V+ + I+
Sbjct: 192 DMAFQRGTFRVRGDTLEIIPAY-EELAVRIELFGDEVERLYYLNPLTGDVVREVDHLLIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY      +  A++ I+ EL  RL ELE+ G LLEAQRL  R TYD+EM+   G C 
Sbjct: 251 PATHYAAGPERMERAIRDIEAELGERLAELEQRGSLLEAQRLRMRTTYDIEMMRQVGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR PG PP  L +Y P+D L  VDESHVTIPQI GMY GD  RK  L ++
Sbjct: 311 GIENYSMHIDGRLPGSPPHCLLDYFPDDFLTVVDESHVTIPQIGGMYEGDASRKRMLIDH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRF+E+       + +SATPGSWELE  QG  VEQ+IRPTGLVDP V 
Sbjct: 371 GFRLPSAADNRPLRFDEFLERVGQMVFLSATPGSWELEHAQGEYVEQVIRPTGLVDPEVV 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI L  ++  R+L+T LTK+MAEDL++YL E  IRVRY+HSEV TL 
Sbjct: 431 VKPTKGQIDDLMHEIKLRTERDERVLVTTLTKKMAEDLSDYLLENGIRVRYLHSEVDTLR 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 491 RVELLRELRKGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGRSLIQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+  A+ ET RRR KQ+ HN+ H I+P+ +++KI +++D I  E 
Sbjct: 551 NVSGQVHMYADKITPSMAEAVGETNRRRAKQIAHNEAHGISPEPLRKKIHDILDDIYREA 610

Query: 741 AAT-------------------------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAA 775
             T                         +  +    +  +++ +    ++ L  QM  AA
Sbjct: 611 EETDTRVGGAVRQLSRGKAPVKETRSSRSRAAAGPAREGMARAELAELIQELNGQMLAAA 670

Query: 776 DNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             L FE AARIRDEI  LK     +G+D +
Sbjct: 671 RELQFELAARIRDEISELKKE--LRGMDAA 698


>gi|317132478|ref|YP_004091792.1| excinuclease ABC, B subunit [Ethanoligenens harbinense YUAN-3]
 gi|315470457|gb|ADU27061.1| excinuclease ABC, B subunit [Ethanoligenens harbinense YUAN-3]
          Length = 670

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/659 (52%), Positives = 454/659 (68%), Gaps = 6/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + + Y P+GDQPAAI QL  G+   ++ Q LLGVTGSGKTFTMA +I  + RP +
Sbjct: 1   MDTFHLVSPYQPTGDQPAAIKQLADGVLRGDRAQTLLGVTGSGKTFTMANIIAKVNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID+
Sbjct: 61  VLAHNKTLAAQLCSEFKEFFPDNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D ++V+SVSCIY +G    Y  M++ L+ G   ++ E+L  LV  QY
Sbjct: 121 LRHSATSALSERRDVVIVASVSCIYNLGDPIDYRNMVISLRPGMQRDRDEVLKKLVSLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+  +R  FRV GD +E+FP++  + A R+  FG+++E I+E   +TG+    +  +
Sbjct: 181 ERNDVNFVRNKFRVRGDVVEVFPAYSGENAVRIEFFGDEVERITEISTVTGEVKGMLGHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SHY+ P   +  A+  +++E+  R+       +LLEAQR+EQR  YD+EML   G
Sbjct: 241 AIYPASHYIVPEEKMLPALDDLEQEMVERVKWFRAHDKLLEAQRIEQRTKYDIEMLREIG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L  R PG  P TL +Y P+D LLFVDESHVT+PQ+ GM  GD  RK TL
Sbjct: 301 FCSGIENYSRVLLRRPPGATPFTLLDYFPDDYLLFVDESHVTLPQVRGMSAGDRARKQTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL FEE+       + VSATPG +E E+    IVEQ+IRPTGLVDP
Sbjct: 361 VDYGFRLPSALDNRPLNFEEFLRHVNQAVFVSATPGDFEREESAQ-IVEQVIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V++R    Q++D+  EINL  ++  R+L+T LTK+MAEDLT Y     ++VRYMH +++
Sbjct: 420 EVQVRPTDGQIDDLLSEINLRVERHERVLVTTLTKKMAEDLTRYFDGMGVKVRYMHHDIE 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER++IIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSL+QTIGR
Sbjct: 480 AIERMQIIRDLRLGGFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLVQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N  VILYADT+T S++ AI ET RRR  Q ++N+ H I P+++ + + ++I+   
Sbjct: 540 AARNANGLVILYADTVTPSMERAISETERRRAIQTQYNEAHGITPKTIVKDVRDIIEISS 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +D              L K +    ++ L  +M  AA  L FE+AA +RD+IK L+  
Sbjct: 600 KDDTQDRK-----SFKKLPKPERDKIIRKLSVEMKEAARMLEFEQAAFLRDKIKELRGE 653


>gi|308071042|ref|YP_003872647.1| UvrABC system protein B (UvrB protein) [Paenibacillus polymyxa
           E681]
 gi|305860321|gb|ADM72109.1| UvrABC system protein B (UvrB protein) [Paenibacillus polymyxa
           E681]
          Length = 663

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/655 (54%), Positives = 486/655 (74%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+++ P GDQP AI +L++GI   +K Q LLG TG+GKTFT+A+ I  + RP +V+A
Sbjct: 11  FEIQSEFQPQGDQPQAIFELVEGIAEGKKHQTLLGATGTGKTFTIAQTIAKLNRPTLVIA 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP+N+V+YFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID++RH
Sbjct: 71  HNKTLAAQLASEFKEFFPNNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSSINEEIDKLRH 130

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+GS + YS +++ L++G    + ++LS LV  QY+R 
Sbjct: 131 SATSSLFERRDVIIVASVSCIYGLGSPKEYSSLLLSLRVGMEKPRNQILSRLVDIQYQRN 190

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +RGTFRV GD +EIFP+   + A RV +FG++IE I+E   LTG+ I   + I I+
Sbjct: 191 DINFVRGTFRVRGDVVEIFPASHGEHAIRVELFGDEIERITEINVLTGELIGERDHIAIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT   T+  A+  I+ EL+ RL EL+++G+LLEAQRLEQR  YD+EM++  G C 
Sbjct: 251 PASHFVTHEDTMKVALVNIERELEERLAELKEQGKLLEAQRLEQRTRYDIEMMKEVGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS  LT R  G  P TL +Y P+D L+ +DESHVT+PQI  MY GD  RK  L E+
Sbjct: 311 GVENYSGPLTFRERGATPYTLMDYFPDDMLIVIDESHVTLPQIRAMYNGDQARKNVLVEH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       I VSATPG +E+E+C+  +V+QIIRPTGL+DP +E
Sbjct: 371 GFRLPSALDNRPLKFEEFEDKVSQIIYVSATPGPYEMEKCE-TMVQQIIRPTGLLDPIIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R ++ Q++D+  EI L  ++  R+L+T LTK+M+EDLT+YL E  I+VRYMHSE+KTLE
Sbjct: 430 VRPSKGQIDDLISEIRLRIEREERVLVTTLTKKMSEDLTDYLKEVGIKVRYMHSEIKTLE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ I+RDLRLG FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 490 RMAILRDLRLGTFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+Y D IT S+  A+ ET RRR  Q+++N++H I PQ++++KI +VI+   + +
Sbjct: 550 NSDGRVIMYGDKITDSMDKALKETERRRAIQIQYNEEHGITPQTIRKKIRDVIEATKVAE 609

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +    +  +  +  LSKK+ ++ ++ L  +M  AA NL FE AA +RD +  L++
Sbjct: 610 SKNDYLPNETGK--LSKKERQSLIQRLEAEMKDAAKNLQFERAAELRDALLELRA 662


>gi|72161600|ref|YP_289257.1| excinuclease ABC subunit B [Thermobifida fusca YX]
 gi|90111057|sp|Q47QN5|UVRB_THEFY RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|71915332|gb|AAZ55234.1| Excinuclease ABC subunit B [Thermobifida fusca YX]
          Length = 701

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/700 (51%), Positives = 492/700 (70%), Gaps = 26/700 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + +  +    F++ TD  P+GDQPAAI +L + I       +LLG TG+GKT T+A +
Sbjct: 2   RPVTDIQRTDRPFEVVTDMVPAGDQPAAIEELARRIQGGAADTVLLGATGTGKTATVAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +V+ PNK LAAQ  +E +   PHNAVEYFVSYYDYYQPEAYVP+TDTYIEK+
Sbjct: 62  IERLQRPTLVIQPNKTLAAQFANELREMMPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT +LL R D +VV+SVSCIYG+G+ + Y   +  +++G  +++ EL
Sbjct: 122 SSINEEVERLRHSATTALLTRRDTVVVASVSCIYGLGTPQEYVDRMATVEVGMEIDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV+ QY R D+   RGTFRV GD++EI P + +++A R+ MFG++IE +   +P+TG
Sbjct: 182 LRRLVEMQYTRNDVAFTRGTFRVRGDTVEIIPVY-DELAVRIEMFGDEIERLMTLHPITG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + +   + + I+  SHYV     +  A+  I+ EL+ RL ELE  G+LLEAQRL  R TY
Sbjct: 241 EVLGESDRVYIFPASHYVAGPERMRKAIAGIQAELEERLAELEAAGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EMLE  G+C  +ENYSR+  GR PG PP TL +Y PED L+ +DESHVT+PQI GMY 
Sbjct: 301 DVEMLEQMGTCAGVENYSRHFDGRAPGSPPNTLLDYFPEDFLVVIDESHVTVPQIGGMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS MDNRPL ++E+      T+ +SATPG +ELE+  G +VEQ+
Sbjct: 361 GDAARKRTLVEHGFRLPSAMDNRPLTWDEFRERTGQTLYLSATPGPYELERVGGDVVEQV 420

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI + A++  R+L+T LTK+MAEDLT+YL +  IR
Sbjct: 421 IRPTGLVDPEVIVKPTEGQIDDLVHEIRIRAERDERVLVTTLTKKMAEDLTDYLTDLGIR 480

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSE+ TL R+E++R+LR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+
Sbjct: 481 VRYLHSEIDTLRRVELLRELRVGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 540

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAAR+V+ +V +YADT+T ++  AI+ET RRR KQL +N +H I+P+ +++K
Sbjct: 541 RSLIQTIGRAARHVSGQVHMYADTVTDAMAAAIEETNRRRAKQLAYNAEHGIDPKPLRKK 600

Query: 729 IMEVIDPILLEDAATTNI-----------------------SIDAQQLSLSKKKGKAHLK 765
           I +++D +  EDA T  +                        +  Q  +L +++  A ++
Sbjct: 601 IADILDSLAREDADTAELLARSRGEKRGTPTPRSGALSGPDRVAEQAKNLPREELAALVE 660

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
            L +QMH AA +L FE AAR+RDEIK LK     +G++++
Sbjct: 661 QLTEQMHQAAADLQFELAARLRDEIKELKRE--LRGMEEA 698


>gi|330813709|ref|YP_004357948.1| excinuclease ABC subunit B [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486804|gb|AEA81209.1| excinuclease ABC subunit B [Candidatus Pelagibacter sp. IMCC9063]
          Length = 714

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/700 (58%), Positives = 527/700 (75%), Gaps = 13/700 (1%)

Query: 106 LARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH 165
           +++L   + P   N K        +     +    F++ + + P+GDQP AI QL +G+ 
Sbjct: 1   MSKLSIVNTPEANNKK-------ENFLKKLEGGKKFKLTSSFTPAGDQPTAIKQLREGLL 53

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           + +K Q+LLGVTGSGKTFTMAK+IE + RPAI++APNK LAAQLY E K+FF  NAVEYF
Sbjct: 54  TNQKDQVLLGVTGSGKTFTMAKIIEELNRPAIILAPNKTLAAQLYGEMKSFFNENAVEYF 113

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
           VSYYDYY PEAYVPR+DT+IEKES+INEQIDRMRHSATRSL E++D I+V+SVSCIYG+G
Sbjct: 114 VSYYDYYTPEAYVPRSDTFIEKESAINEQIDRMRHSATRSLFEKDDVIIVASVSCIYGLG 173

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           S +SYS+M    +  +S  +++++  LV+ QYKR D    RG+FRV G++IEIFPSHLED
Sbjct: 174 SPDSYSKMTFTFEKNNSYNREKIIKGLVELQYKRNDQNFYRGSFRVRGENIEIFPSHLED 233

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
            AWR+S+    I  + EF PLTG K  ++  IKIYANSHY+TPRPT+  A+K IK EL  
Sbjct: 234 RAWRISLDDEKIVSLKEFDPLTGDKTEDLNIIKIYANSHYITPRPTVQQAIKEIKAELVT 293

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
            L +  KE +LLEAQR+++R  +DLEM+E TG+C  IENYSR+L+GR+PGEPPPTLFEY+
Sbjct: 294 TLKKFRKENKLLEAQRIDERTRFDLEMIEATGTCAGIENYSRFLSGRSPGEPPPTLFEYL 353

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
           P+++++FVDESHVT+PQ++GMY+GD  RK TL++YGFRLPSCMDNRPL+FEEW+ +R  T
Sbjct: 354 PDNAIIFVDESHVTVPQLNGMYKGDHTRKKTLSDYGFRLPSCMDNRPLKFEEWDMMRSET 413

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
           I VSATPG+WEL+Q +G+  EQ+IRPTGL DP + IR A+ QV+D+  E     ++  R+
Sbjct: 414 IFVSATPGNWELDQSKGVFAEQVIRPTGLTDPDILIRPAKNQVDDLLSECLKIVKKKQRV 473

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L T LTK+MAEDLTEYL E  I+VRYMHSE+ TLERIEIIRDLRLG FDVLVGINLLREG
Sbjct: 474 LATTLTKKMAEDLTEYLDENGIKVRYMHSEIDTLERIEIIRDLRLGVFDVLVGINLLREG 533

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LDIPEC LVAILDADKEGFLRS+TSLIQTIGRAARNV  KVILYAD  TKSI+ AI+ET 
Sbjct: 534 LDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVEGKVILYADKETKSIKKAIEETD 593

Query: 706 RRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
           RRR +Q   NKK+NI PQS+++ I ++++ +  +D      +I+         K      
Sbjct: 594 RRRSRQELFNKKNNITPQSIQKNIGDILESVYEKDYLNAEKNIEIGGNLKKHLKSLKK-- 651

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
                MH++ADNL FE+AA+IRDEIK+L++S     ++ S
Sbjct: 652 ----DMHISADNLEFEKAAKIRDEIKKLENSDLGLAINSS 687


>gi|158313885|ref|YP_001506393.1| excinuclease ABC subunit B [Frankia sp. EAN1pec]
 gi|158109290|gb|ABW11487.1| excinuclease ABC, B subunit [Frankia sp. EAN1pec]
          Length = 731

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/705 (49%), Positives = 486/705 (68%), Gaps = 30/705 (4%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
                 +  +    F++ +D+ PSGDQPAAI +L + + + EK  +LLG TG+GK+ T A
Sbjct: 28  FERPTTDFQRSAAPFEVVSDFAPSGDQPAAIEELARRVRAGEKDVVLLGATGTGKSATTA 87

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            ++E +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAY+ +TDTYIE
Sbjct: 88  WLVEHLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYIAQTDTYIE 147

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+SSINE+++R+RHSAT +LL R D +VV+SVSCIYG+G+ + Y   +V+L++GD +E+ 
Sbjct: 148 KDSSINEEVERLRHSATMNLLTRRDVVVVASVSCIYGLGTPQEYIDRMVRLRVGDEIERD 207

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
            LL   V  QY R D+   RGTFRV GD++E+FP + E++A R+ MFG++IE ++  +PL
Sbjct: 208 RLLRRFVDVQYARNDLAFTRGTFRVRGDTVEVFPVY-EELAVRIEMFGDEIERLTYLHPL 266

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG+ +R  + + ++  +HYV     +  A+  I+ EL  RL ELE +G+LLEAQRL  R 
Sbjct: 267 TGEIVRESQEVFVFPATHYVAGPERMERAIAGIEAELTDRLAELENQGKLLEAQRLRMRT 326

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
           TYD+EM+   G C  IENYSR++ GR  G  P TL +Y P+D LL +DESHVT+PQI GM
Sbjct: 327 TYDIEMMRQVGFCSGIENYSRHIDGRAAGTAPHTLLDYFPDDFLLVIDESHVTVPQIGGM 386

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           Y GD  RK  L ++GFRLPS +DNRPLR+EE+      T+ +SATPG +EL +  G +VE
Sbjct: 387 YEGDMSRKRNLVDHGFRLPSAIDNRPLRWEEFLERIGQTVYLSATPGPYELGRGDG-VVE 445

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           QIIRPTGL+DP + ++  + Q++D+  EI + A++  RIL+T LTK+M+EDLT+YL E  
Sbjct: 446 QIIRPTGLLDPEIVLKPTKGQIDDLVHEIRIRAERDERILVTTLTKKMSEDLTDYLLELG 505

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           IRVRY+HSEV TL R+E++ +LR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR
Sbjct: 506 IRVRYLHSEVDTLRRVELLTELRRGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLR 565

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S  SLIQTIGRAARNV+ +V +YAD IT S+  AI+ET RRREKQ+ +N +  ++PQ ++
Sbjct: 566 SDKSLIQTIGRAARNVSGQVHMYADKITPSMSKAIEETNRRREKQIAYNTERGLDPQPLR 625

Query: 727 EKIMEVIDPILLEDAATTNISID--------------------------AQQLSLSKKKG 760
           +K++++++ ++ E A    I                             A+   + + + 
Sbjct: 626 KKVVDILEDMVRESAGEEMIGGGGRAQSRGKAPVPGMKSKAGDSVGRYAAELAGMPRHEL 685

Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
              ++ L  QMH AA  L FE AAR+RDE+  LK     +G+D +
Sbjct: 686 AQLIRQLDDQMHEAAKELQFELAARLRDEVNELKKE--LRGMDAA 728


>gi|146329703|ref|YP_001209468.1| excinuclease ABC subunit B [Dichelobacter nodosus VCS1703A]
 gi|146233173|gb|ABQ14151.1| excinuclease ABC, B subunit [Dichelobacter nodosus VCS1703A]
          Length = 669

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/659 (54%), Positives = 465/659 (70%), Gaps = 1/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+  DY P+GDQ  AI QLL G+ +    Q LLGVTGSGKTFTMA VI    RP +++A
Sbjct: 6   FQLVADYAPAGDQAPAIEQLLSGLDAGLAKQTLLGVTGSGKTFTMANVIARANRPTLILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E + FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 66  PNKTLAAQLYGEMRAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D ++V+SVS IYG+G    Y +M++ +  G  ++Q+ LLS L + QY R 
Sbjct: 126 SATKAILERRDTVIVASVSAIYGLGDPREYLKMLLHVTRGSQIDQRSLLSHLAELQYTRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  ++RGTFRV GD I+I P+   + A R+++F +++E I  F PLTG  I +V  + IY
Sbjct: 186 DTQLLRGTFRVRGDVIDIMPAEAVEHAVRIALFDDEVERIQYFDPLTGAVIADVPRVSIY 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY T R  L  A+  IK EL  R  +L  + +LLEAQRL QR  +DLEM+   G C 
Sbjct: 246 PKTHYATTRDRLLAAIDEIKAELHERCAQLRAQNKLLEAQRLAQRTQFDLEMIMELGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR  GEPPPTL +Y+P D+LL +DESHVT+PQ+ GMYRGD  RK TL  +
Sbjct: 306 GIENYSRYLSGRAAGEPPPTLHDYLPADALLLIDESHVTLPQLHGMYRGDRSRKETLVAH 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  + P TI +SATP  +E EQ  G IVEQ++RPTGL+DP VE
Sbjct: 366 GFRLPSALDNRPLRFEEFEAISPQTIYISATPSDYEREQS-GQIVEQLVRPTGLLDPRVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+DV  EI     +  R+L+T LTK+M+EDLT++L E+ I VRYMHS++ T+E
Sbjct: 425 VRPVAQQVDDVLAEIQRRRAKNERVLITTLTKKMSEDLTDFLQEQGIAVRYMHSDIHTVE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG  DVLVGINLLREGLDIPE  LVAI DADKEGFLR + +LIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGVIDVLVGINLLREGLDIPEVSLVAIFDADKEGFLRGERALIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V+   ILYAD +T+S++ A+ ET RRREKQ   N++H I PQ++++KI ++++      
Sbjct: 545 HVDGMAILYADHVTQSMEKALTETQRRREKQTAFNEQHGIVPQTIQKKITDIMEGAHRVS 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
              T  +   +  S   K     ++ L K M  AA +L FE AA IRD IK L+ +   
Sbjct: 605 EKKTTRTPSEETFSSDPKVIIKEIEQLEKAMLAAARDLEFERAAEIRDRIKTLEKALLM 663


>gi|325291329|ref|YP_004267510.1| Excinuclease ABC subunit B [Syntrophobotulus glycolicus DSM 8271]
 gi|324966730|gb|ADY57509.1| Excinuclease ABC subunit B [Syntrophobotulus glycolicus DSM 8271]
          Length = 708

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/656 (53%), Positives = 465/656 (70%), Gaps = 5/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   Y   GDQP A+ +L  G+   +K Q LLGVTGSGKTFTMA +I    +PA+V+A
Sbjct: 25  FNLHAPYRLEGDQPQAVDKLTAGVLKGKKHQTLLGVTGSGKTFTMANIIAGANKPALVLA 84

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV  +DTYIEK++SINE+I+++RH
Sbjct: 85  HNKTLAAQLYCEFKEFFPENAVEYFVSYYDYYQPEAYVAFSDTYIEKDASINEEIEKLRH 144

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D IVV+SVSCIYG+GS + Y  M++ L+    +++ ++L  LV+ QY R 
Sbjct: 145 SATAALFERRDVIVVASVSCIYGMGSPDEYRDMVLSLRQNQEIDRNKILRKLVEIQYDRN 204

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EI P+   + A RV +FG++IE I E   LTG+ +     + I+
Sbjct: 205 DIAFARGTFRVRGDIVEICPASSSEKAIRVELFGDEIEHIYEVNVLTGEILGERRHVSIF 264

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHYVT R  L  A+  I+ EL+ RL  L    +L+EAQRLEQR  YD+EML   G C 
Sbjct: 265 PNSHYVTEREKLLKAVGNIEIELEERLQVLRGREKLVEAQRLEQRTRYDVEMLRELGFCN 324

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LT R PGE P TL  + P+D LLFVDESH T+PQI GMY GD  RK TL +Y
Sbjct: 325 GIENYSRHLTFREPGETPYTLLHFFPKDFLLFVDESHRTLPQIRGMYEGDRSRKETLVDY 384

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF E+    P  I VSATPG +ELE    + VEQIIRPTGL+DP V+
Sbjct: 385 GFRLPSALDNRPLRFNEFEQYTPLRIYVSATPGPYELEHSP-VSVEQIIRPTGLLDPEVD 443

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI L   +  RIL+T LTKRM+E+LT YL + N++VRY+HS++  LE
Sbjct: 444 VRPIKGQIDDLIGEIRLRIDRDERILVTTLTKRMSEELTNYLKQLNMKVRYLHSDISALE 503

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+R+LRLG+ D++VGINLLREGLD+PE  LVAILDADKEGFLRS++SLIQTIGRAAR
Sbjct: 504 RMEILRELRLGEIDIIVGINLLREGLDLPEVSLVAILDADKEGFLRSESSLIQTIGRAAR 563

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD +T+S+++AI+ET RRR+ Q E+N ++ I PQ+++++I EV +     +
Sbjct: 564 NANGKVIMYADKLTRSMKIAIEETNRRRKIQNEYNVRNVITPQTIRKQIYEVPEATRAAE 623

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                     +   +S ++ +  +++   +M+ AA +L+FE AA +RD I  LK  
Sbjct: 624 KEAGY----GKTGEVSPEERQKLIQAFEAEMYKAAKDLDFERAAELRDAIIELKGE 675


>gi|182418218|ref|ZP_02949518.1| excinuclease ABC, B subunit [Clostridium butyricum 5521]
 gi|237666176|ref|ZP_04526163.1| excinuclease ABC, B subunit [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378036|gb|EDT75576.1| excinuclease ABC, B subunit [Clostridium butyricum 5521]
 gi|237658266|gb|EEP55819.1| excinuclease ABC, B subunit [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 657

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/656 (54%), Positives = 472/656 (71%), Gaps = 3/656 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + P+GDQP AI +L+  I++  + Q LLGVTGSGKTFTMA +IE +QRP I
Sbjct: 1   MGEFKIHSKFKPTGDQPQAIEKLIDSINNDHRGQTLLGVTGSGKTFTMANIIERLQRPTI 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID+
Sbjct: 61  VLAHNKTLAAQLCSEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G+ + Y ++ + L+ G   E+ E++  LV+ QY
Sbjct: 121 LRHSATSALFERRDVIIVASVSCIYGLGNPDEYKKLTLSLRTGMEKERNEIIKKLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GDS++I P+   +   R+  FG++I+ I EF  LTG  I +   +
Sbjct: 181 ERNDIDFSRGTFRVRGDSLDIIPASYSNKGIRIEFFGDEIDRIREFDVLTGSIIGDRNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I   SH+ T + T++ A+  I++EL+ RL EL  + +LLEAQRL QR  YD+EM++  G
Sbjct: 241 AITPASHFATSKETVDRAIGKIEDELEERLRELNSQDKLLEAQRLRQRTNYDIEMIKEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L GR+ G PP TL +Y PED L+F+DESHVT+PQ+  MY GD  RK TL
Sbjct: 301 YCSGIENYSRILDGRDSGTPPKTLLDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKNTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLP   DNRPL+FEE+       + VSATP  +EL+  +  I EQIIRPTGL+DP
Sbjct: 361 VDYGFRLPCAYDNRPLKFEEFEKKIKQVVFVSATPSQYELDNSEE-IAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + IR    Q++D+Y EIN   ++G R L+T LTKRMAEDLT+YL E  ++  YMHSE+ 
Sbjct: 420 EIVIRPVTGQIDDLYGEINKTTERGFRTLVTTLTKRMAEDLTKYLTELGVKTTYMHSEID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++II+DLR G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMKIIKDLRTGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  S+VI+YAD ITKS+  AI ET RRRE Q ++N++H I P ++ + + +VI+   
Sbjct: 540 AARNSESRVIMYADNITKSMNKAIKETERRREIQTKYNEEHGITPTTIIKDVRDVIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           + +      + + ++  L+KK+    +K    +M LAA NL FE AA +RD IK+L
Sbjct: 600 VAEDTAEYKTDENKK--LTKKQRDKLIKEYTNEMMLAAKNLQFERAAELRDIIKQL 653


>gi|242279306|ref|YP_002991435.1| excinuclease ABC subunit B [Desulfovibrio salexigens DSM 2638]
 gi|242122200|gb|ACS79896.1| excinuclease ABC, B subunit [Desulfovibrio salexigens DSM 2638]
          Length = 668

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/664 (51%), Positives = 465/664 (70%), Gaps = 3/664 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY   GDQP A+ QL++ I    + Q+LLG TG+GKTF MA VI+ + RP +VMA
Sbjct: 5   FELVSDYTLKGDQPEAVKQLVENIKHGVQDQILLGATGTGKTFAMANVIKELNRPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL++EFK  FP+NAVEYFVSYYDYYQPEAY+P +DTYIEK+SSIN+ ID++RH
Sbjct: 65  PNKTLAAQLFNEFKALFPNNAVEYFVSYYDYYQPEAYLPHSDTYIEKDSSINDDIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D ++V+SVSCIYG+GS E Y++MI+ ++ G  +  ++L+  LV+ QY+R 
Sbjct: 125 SATHALLTRRDVLIVASVSCIYGLGSPEFYAKMIIPVEEGQELSMEKLMDKLVEVQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD IEI P++  + A R+  FG++I+ I E  PLTG+         IY
Sbjct: 185 DYDFHRGTFRVRGDVIEIIPAYAREQALRIEFFGDEIDSILETDPLTGEVTGRRRKTVIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+V+ +  L  A + I+ EL   L   +KE +L+EAQR+EQR  YDLEM+E  G C 
Sbjct: 245 PASHFVSDQDNLERAREDIRNELAETLTLYKKENKLIEAQRIEQRTMYDLEMIEEIGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  GE P TL  Y P+D LLF+DESH+ +PQ+  MY GD  RK TL  +
Sbjct: 305 GIENYSRHLDGRKEGEAPATLIHYFPDDFLLFMDESHIAVPQVGAMYNGDRSRKTTLVNF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+      T+ VSATPG WE+E+ QG++VEQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLCFDEFLDKIGQTVYVSATPGPWEMERAQGLVVEQIIRPTGLLDPEIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  E     ++G R+L+T LTKRMAEDLTEY  +  +  +Y+HS++ T+E
Sbjct: 425 VRPVKGQMDDLLAECKEREKRGERVLITTLTKRMAEDLTEYFNQMGVEAKYLHSDIDTME 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ II+ LR G+F  LVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT GRAAR
Sbjct: 485 RMAIIQSLRAGEFVALVGINLLREGLDIPEVSLVAILDADKEGFLRSTRSLIQTFGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VILYAD +TKS++ AIDET RRR KQ+E+N+ H I PQ++ + +  ++  +  ++
Sbjct: 545 NAEGRVILYADNVTKSMRTAIDETYRRRAKQMEYNEAHGIVPQTIAKSLDNMLGTLYSDN 604

Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            + + + I A+ ++   L   K +  ++ L K M   A  L FE+AA +RD I+ L+   
Sbjct: 605 WSGSEVKIAAEDVAEYGLDPAKMEKEVRKLEKDMRKYAAELEFEKAAELRDRIQVLREKI 664

Query: 798 YFQG 801
              G
Sbjct: 665 LSLG 668


>gi|221066570|ref|ZP_03542675.1| excinuclease ABC, B subunit [Comamonas testosteroni KF-1]
 gi|220711593|gb|EED66961.1| excinuclease ABC, B subunit [Comamonas testosteroni KF-1]
          Length = 688

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/667 (54%), Positives = 483/667 (72%), Gaps = 7/667 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   Y P+GDQPAAI +L++G++  E  Q LLGVTGSGKTFTMA VI  + +PAIV
Sbjct: 20  SPFELFQPYPPAGDQPAAIEKLVEGVNDGESFQTLLGVTGSGKTFTMANVIARLGKPAIV 79

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++M
Sbjct: 80  FAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQM 139

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R S T+S++ER D ++V++VS IYGIG  ESY +MI+ L+ GD++ Q++ ++ L++ QY+
Sbjct: 140 RLSCTKSIMERRDVVIVATVSAIYGIGEPESYHRMIMTLRAGDTLNQRDAIAQLIRMQYQ 199

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD+I++FP+   ++A R+ +F +++E +  F PLTG+  +++    
Sbjct: 200 RNDQDFSRGTFRVRGDTIDVFPAEHSELAVRIELFDDEVESLQLFDPLTGRVRQSIPRFT 259

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY +SHYVTPR  +  A++ IKEEL  RL +L   G+L+EAQRLEQR  +DLEML   G 
Sbjct: 260 IYPSSHYVTPRDKVLAAVETIKEELAERLKQLVGMGKLVEAQRLEQRTRFDLEMLSEVGH 319

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENY+R+L+   PG+PP TL +Y+P DS++F+DESH  I Q++ MY GD  RK TL 
Sbjct: 320 CKGIENYTRHLSASRPGDPPSTLTDYLPRDSIMFLDESHQMIGQLNAMYNGDRARKTTLV 379

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+       + VSATP  +E     G +VEQ++RPTGLVDP 
Sbjct: 380 EYGFRLPSALDNRPLKFEEFEQRMRQVVFVSATPAEYEKTHA-GQVVEQVVRPTGLVDPE 438

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R A  QV+DV  EI    +   R+L+T LTKRMAE LTEYL +  ++VRY+HS+V T
Sbjct: 439 IEVRPAIHQVDDVLQEIRQRVELEERVLITTLTKRMAEQLTEYLTDNGVKVRYLHSDVDT 498

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 499 VERVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRA 558

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN K ILYAD IT+S++ AI ET RRREKQ+  N+ + I P+ + +++ ++ID +  
Sbjct: 559 ARNVNGKAILYADRITESMKKAIGETERRREKQMAFNEANGIVPKQIVKRVKDLIDGVYS 618

Query: 739 EDAATTNISI------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           E +      +       A+   +++K     +K L KQM   A NL FE+AAR+RD++  
Sbjct: 619 EKSGKEAERLQEQALQQARVEDMTEKDIAREIKRLEKQMLEHARNLEFEQAARVRDQLSL 678

Query: 793 LKSSPYF 799
           LK   + 
Sbjct: 679 LKQQLFG 685


>gi|118602443|ref|YP_903658.1| excinuclease ABC subunit B [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567382|gb|ABL02187.1| Excinuclease ABC subunit B [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 664

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/658 (54%), Positives = 489/658 (74%), Gaps = 2/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + + PSGDQP AI  L+  +++  K Q LLGVTGSGKTFT+A VI+  +RP+++MA
Sbjct: 5   FQLISKFSPSGDQPEAIKTLIDSVNAGVKFQTLLGVTGSGKTFTLANVIQQTKRPSLIMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSE K FFP+N+VEYFVSYYDYYQPEAYVP +DTYIEK+SSINEQI++MR 
Sbjct: 65  PNKTLAAQLYSEMKEFFPYNSVEYFVSYYDYYQPEAYVPASDTYIEKDSSINEQIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER+D I+++SVS IYG+G+ ESY  M++ L +G+   Q+E+L  L + QY R 
Sbjct: 125 SATKALLERDDVIIIASVSAIYGLGNPESYMAMLLHLSVGEVTNQREILLRLSQMQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ +IRG FRV G+ I+IFP+  E+   R+ MF  +IE++  F PLTG+K+++++ + IY
Sbjct: 185 DVTLIRGHFRVKGEVIDIFPADSEEQTIRIEMFDEEIEQLYWFDPLTGEKLKSLQRVTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTP+  +   +  IK ELK R  EL    +L+E QRL QR+  D+EM+   G C 
Sbjct: 245 PQTHYVTPKSKILNMLDDIKAELKDRRSELLSVNKLVEEQRLTQRVHMDIEMMRELGYCT 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+ +NPG+PP TL +Y+P+++L+ +DESHVT+ QI GMY+GD  RK TL ++
Sbjct: 305 GIENYSRYLSSQNPGDPPSTLLDYLPDNALVILDESHVTVSQIGGMYKGDRARKKTLVDF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+       I+VSATP  +ELE    +IVEQ++RPTGL+DP ++
Sbjct: 365 GFRLPSALDNRPLKFSEFEDRVHQCILVSATPAQYELEVS-SVIVEQVVRPTGLLDPEID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EI +  + G R+L+T LTK+M+E L++YL + +++VRY+HS++ T+E
Sbjct: 424 IRPVDTQVDDLLSEIRMRVKAGERVLVTTLTKKMSEQLSDYLNDHHVKVRYLHSDIDTIE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RVEIIRDLRLGIFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N  VILYA  ITKS+Q A+DET RRR KQ  +N K+NI P+ + + I+ ++D  L  +
Sbjct: 544 NINGHVILYAARITKSMQKAMDETKRRRIKQQAYNLKNNITPEGIAKPIINILDTDLTSN 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
               + ++    + LS  +    +K L KQM+  A++L FE AA +R++IK+LK + +
Sbjct: 604 QIEED-NVQKVFIQLSPVQLAKKIKILEKQMYSFANDLAFEHAADMRNQIKQLKDTQF 660


>gi|282854217|ref|ZP_06263554.1| excinuclease ABC, B subunit [Propionibacterium acnes J139]
 gi|282583670|gb|EFB89050.1| excinuclease ABC, B subunit [Propionibacterium acnes J139]
 gi|314923202|gb|EFS87033.1| excinuclease ABC subunit B [Propionibacterium acnes HL001PA1]
 gi|314966970|gb|EFT11069.1| excinuclease ABC subunit B [Propionibacterium acnes HL082PA2]
 gi|315103242|gb|EFT75218.1| excinuclease ABC subunit B [Propionibacterium acnes HL050PA2]
 gi|327327791|gb|EGE69567.1| excinuclease ABC subunit B [Propionibacterium acnes HL103PA1]
          Length = 701

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/694 (51%), Positives = 482/694 (69%), Gaps = 27/694 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + + ++ +  F + +++ PSGDQP AIA+L K ++S E+  +LLG TG+GKT T+A +
Sbjct: 2   RPVTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
            E +QRP +VM PNK LAAQ   E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+
Sbjct: 62  AEKLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+NE+++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y   ++ L++G   ++ EL
Sbjct: 122 SSLNEEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R DI   RGTFRV GD++EIFP + E+ A RV  FG++IE ++  +PLTG
Sbjct: 182 LRDLVTNQYIRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I   E + ++  +HYV     +  A+  I++EL+ RL  LE++G+LLEAQRL  R TY
Sbjct: 241 EVISEDEQVYVFPATHYVAGPERMERAVASIQQELEERLAVLERDGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM++  G+C  IENYSR++ GR PG  P  L +Y PED +L +DESHVT+PQI GMY 
Sbjct: 301 DIEMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS MDNRPL+F+E+      T+ +SATPGS+E E+  G +VEQI
Sbjct: 361 GDMSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERAHG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++    Q++D+  EI     +G R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 420 IRPTGLVDPEIIVKPTHGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            RY+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+
Sbjct: 480 TRYLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++K
Sbjct: 540 RSLIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI-------------------------SIDAQQLSLSKKKGKAH 763
           I ++ + +  E A T  +                                 ++++     
Sbjct: 600 IGDITEMLAREGADTDELFEKFNYGKGHRGYNSMITDEQRAAQGKRLDVSKMAEEDLGKL 659

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +  L  +M  AA  L FE AAR+RDEI  LK   
Sbjct: 660 IVDLTTEMRSAAGELKFEVAARLRDEIADLKKEL 693


>gi|323466934|gb|ADX70621.1| Excision endonuclease subunit UvrB [Lactobacillus helveticus H10]
          Length = 682

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/659 (50%), Positives = 463/659 (70%), Gaps = 4/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + +P +V+ 
Sbjct: 10  FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIANLNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L+ERND IVV+SVS IYG+G  + Y++ ++ +  G   ++  LL  LV  QY R 
Sbjct: 130 ATTSALMERNDVIVVASVSSIYGLGDPKEYARSVLMIHEGQEYDRNVLLRDLVNLQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   + A+R+  FG++I+ I E   LTG+ I   E+I ++
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGNSNHAYRIEFFGDEIDRIVEIDSLTGEVIGERESISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L  A+K I +E+K ++ + E EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNDDQLRRALKAISKEMKDQVKKFEGEGKLLEAERIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L  +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLTLIDESHATMPEIRAMYNGDRNRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVHQILYVSATPGDYELERT-NHKVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+V+Y+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVQYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+QT+GRAAR
Sbjct: 489 RMKILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N N +VI+YADTIT S++ AI+ T RRR+ Q E NK+H I P+++ + + +VI    P  
Sbjct: 549 NANGEVIMYADTITDSMRAAINATKRRRKIQEEFNKEHGITPKTIIKPVQDVISITKPSS 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +    ++   D     L+  + K  +K+L++QM  AA  L+FEEAA +RD I  L+ S
Sbjct: 609 GDKDKKSDSFADLNFDELTASQKKTMIKNLQEQMKEAAKKLDFEEAANLRDAIIDLQKS 667


>gi|121609328|ref|YP_997135.1| excinuclease ABC subunit B [Verminephrobacter eiseniae EF01-2]
 gi|121553968|gb|ABM58117.1| excinuclease ABC, B subunit [Verminephrobacter eiseniae EF01-2]
          Length = 719

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/672 (53%), Positives = 489/672 (72%), Gaps = 7/672 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F +   Y P+GDQP AIA+L++G++  E  Q LLGVTGSGKTFTMA VI  M RPAIV
Sbjct: 45  SPFALFQPYLPAGDQPEAIAKLVEGLNDGEVFQTLLGVTGSGKTFTMANVIARMGRPAIV 104

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++M
Sbjct: 105 FAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQM 164

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R S T+SL+ER D ++V++VS IYGIG  ESY +M++ L+ GD + Q+++++ L++ QY+
Sbjct: 165 RLSCTKSLMERRDVVIVATVSAIYGIGEPESYHRMVMILRGGDKLGQRDVIAQLIRMQYQ 224

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RG FRV G++I++FP+   ++A R+ +F +++  +  F PLTG+  + +    
Sbjct: 225 RNDADFSRGKFRVRGETIDVFPAEHSELALRIELFDDEVASLQLFDPLTGRVKQKILRFT 284

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +SHYVTPR  +  A++ IK EL  RL +L+  G+LLEAQRLEQR  +DLEML   G 
Sbjct: 285 VYPSSHYVTPRDKVLAAIESIKAELAERLQQLQALGKLLEAQRLEQRTRFDLEMLSEVGH 344

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENY+R+L+G  PG+PP TL +Y+P+D+L+F+DESH  I Q++ MY GD  RK TL 
Sbjct: 345 CKGIENYTRHLSGAAPGDPPSTLTDYLPKDALMFLDESHQMIGQLNAMYSGDRSRKTTLV 404

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL+FEE+       I VSATP  +E     G IV+Q++RPTGLVDP 
Sbjct: 405 DYGFRLPSALDNRPLKFEEFEQRMRQVIFVSATPADYERIHS-GQIVDQVVRPTGLVDPE 463

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V++R A  QV+DV  EI + AQ+  R+L+T LTKRMAE LT+YL +  ++VRY+HS++ T
Sbjct: 464 VQVRPATHQVDDVLQEIRIHAQRHERVLITTLTKRMAEQLTDYLADNGVKVRYLHSDIDT 523

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SL+QTIGRA
Sbjct: 524 VERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLVQTIGRA 583

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N + ILYAD +T+S++ AI ET RRR +QL HN++H I P+S+ +++ ++ID +  
Sbjct: 584 ARNINGRAILYADRMTESMKKAIGETERRRIRQLAHNQRHAITPRSIVKRVRDLIDGVYS 643

Query: 739 EDAATTNISID------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           E A      ++      A+   +S+K     +K L K+M   A NL FE+AAR+RD++  
Sbjct: 644 EKAGKVAERLEQEAMQRAKTQDMSEKDLAREIKRLEKRMLEHARNLEFEQAARMRDQLAG 703

Query: 793 LKSSPYFQGLDD 804
           LKS  +     D
Sbjct: 704 LKSQVFGAHGSD 715


>gi|120404324|ref|YP_954153.1| excinuclease ABC subunit B [Mycobacterium vanbaalenii PYR-1]
 gi|119957142|gb|ABM14147.1| Excinuclease ABC subunit B [Mycobacterium vanbaalenii PYR-1]
          Length = 722

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/705 (51%), Positives = 480/705 (68%), Gaps = 33/705 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++   +    F++ +++ P+GDQPAAI +L + I + EK  +LLG TG+GK+ T A +
Sbjct: 16  RPVDEVVRSGARFEVVSEFEPAGDQPAAIDELERRIRAGEKDVVLLGATGTGKSATTAWL 75

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+
Sbjct: 76  IERLQRPTLVMAPNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKD 135

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN+ ++R+RHSAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+GD V +  L
Sbjct: 136 SSINDDVERLRHSATSNLLSRRDVVVVASVSCIYGLGTPQSYMDRSVELKVGDEVPRDGL 195

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R D+   RGTFRV GD++EI PS+ E++A R+  FG++IEE+   +PLTG
Sbjct: 196 LRLLVDVQYTRNDMAFTRGTFRVRGDTVEIIPSY-EELAVRIEFFGDEIEELYYLHPLTG 254

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             IR V++++I+  +HYV     +  A+  I+ EL+ RL ELE +G+LLEAQRL  R  Y
Sbjct: 255 DIIRKVDSLRIFPATHYVAGPERMAQAISTIEAELEERLAELEGQGKLLEAQRLRMRTNY 314

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G C  IENYSR++ GR  G  P TL +Y PED LL +DESHVT+PQI GMY 
Sbjct: 315 DIEMMRQVGFCSGIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYE 374

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L ++GFRLPS +DNRPL +EE+      T+ +SATPGS+EL Q  G  VEQ+
Sbjct: 375 GDMSRKRNLVDFGFRLPSAVDNRPLTWEEFADRIGQTVYLSATPGSYELSQSGGEFVEQV 434

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++  + Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 435 IRPTGLVDPQVVVKPTKGQIDDLIGEIRKRTERDERVLVTTLTKKMAEDLTDYLLEMGIR 494

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSEV TL R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 495 VRYLHSEVDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSP 554

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +V +YAD +T S++ AIDET RRR KQ  +NK+H I+P+ +++K
Sbjct: 555 RSLIQTIGRAARNVSGEVHMYADKMTDSMKQAIDETERRRAKQTAYNKEHGIDPKPLRKK 614

Query: 729 IMEVIDPILLEDAATTNIS------------------------------IDAQQLSLSKK 758
           I +++D +  E   T                                        ++ + 
Sbjct: 615 IADILDQVYREADDTEAAESVPIGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSNMPRA 674

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           +    +K L  QM  AA +L FE AARIRDEI  LK     +G+D
Sbjct: 675 ELADLIKDLTAQMMAAARDLQFELAARIRDEIADLKKE--LRGMD 717


>gi|160947208|ref|ZP_02094375.1| hypothetical protein PEPMIC_01141 [Parvimonas micra ATCC 33270]
 gi|158446342|gb|EDP23337.1| hypothetical protein PEPMIC_01141 [Parvimonas micra ATCC 33270]
          Length = 657

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/663 (54%), Positives = 470/663 (70%), Gaps = 9/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + P+GDQP AI ++   I    K  +L GVTGSGKTFTMA +IE +Q+P +V+A
Sbjct: 3   FVLNSKFKPTGDQPEAIEKISDSIKKGNKEIILKGVTGSGKTFTMANIIEKVQKPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL SEFK FFP+NAVE+FVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH
Sbjct: 63  HNKTLAYQLASEFKEFFPNNAVEFFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G    Y  ++V L+ G   ++ E++  LV  QY R 
Sbjct: 123 SATMSLFERRDVIIVASVSCIYGLGDPIDYENLVVSLRPGMIKDRDEVIRKLVDIQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  IRGTFRV GDS+EIFP    + + RV  FG++I++ISE   LTG  I   E + IY
Sbjct: 183 DINFIRGTFRVRGDSLEIFPVSSSENSIRVEFFGDEIDKISEIDALTGNIIGTREHVAIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+ T    +  A+  I +EL+ RL+ L +E +L+EAQRLEQR  YDLEML+  G C 
Sbjct: 243 PASHFATSSEKIERAIGTISKELEERLLVLNQENKLVEAQRLEQRTKYDLEMLQEIGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS +L+GR  G  P TL +Y P+D L+ VDESHVT+PQI  MY GD  RK  L +Y
Sbjct: 303 GVENYSAHLSGRERGSRPYTLIDYFPDDFLIIVDESHVTVPQIGAMYEGDRSRKQNLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  +    + VSATPG +E        VEQIIRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLKFTEFESMVNQILYVSATPGKYEKSH-NLEEVEQIIRPTGLLDPLIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N   ++G R+L+T LTK+MAE+LT+YL    I+  Y+HS++ T+E
Sbjct: 422 VRKTEGQIDDIIGEVNSVIKKGERVLITTLTKKMAENLTDYLKNVGIKTTYLHSDIDTIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR+GKFDVLVGINLLREGLD+PE  +V I+DADKEGFLRS+TS+IQTIGRAAR
Sbjct: 482 RMEIIRDLRVGKFDVLVGINLLREGLDLPEVSMVIIMDADKEGFLRSETSMIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +VI+YAD ITKS+ +AI ET RRRE Q ++N +HNI P+SVK+ I E+I    + +
Sbjct: 542 NVNGRVIMYADRITKSMDVAIKETNRRREIQNKYNIEHNITPKSVKKDIREIIQATKVAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
                 + D +      K  ++ ++ L+ +M  AAD+L+FE AA IRDEIKRLK      
Sbjct: 602 DNVDYKTEDVEI-----KDYESFIEDLKNEMLSAADSLDFERAASIRDEIKRLKE---MW 653

Query: 801 GLD 803
           GLD
Sbjct: 654 GLD 656


>gi|313837402|gb|EFS75116.1| excinuclease ABC subunit B [Propionibacterium acnes HL037PA2]
 gi|314927925|gb|EFS91756.1| excinuclease ABC subunit B [Propionibacterium acnes HL044PA1]
 gi|314971786|gb|EFT15884.1| excinuclease ABC subunit B [Propionibacterium acnes HL037PA3]
 gi|328907048|gb|EGG26814.1| excinuclease ABC, B subunit [Propionibacterium sp. P08]
          Length = 701

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/694 (50%), Positives = 485/694 (69%), Gaps = 27/694 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + + ++ +  F + +++ PSGDQP AIA+L K ++  E+  +LLG TG+GKT T+A +
Sbjct: 2   RPVTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNDGEQDVVLLGATGTGKTATVAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
            E +QRP +VM PNK LAAQ   E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+
Sbjct: 62  AEKLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+NE+++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y   ++ L++G   ++ EL
Sbjct: 122 SSLNEEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R DI   RGTFRV GD++EIFP + E+ A RV  FG++IE ++  +PLTG
Sbjct: 182 LRDLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I   E + ++  +HYV     +  A+  I++EL+ RL  LE++G+LLEAQRL  R TY
Sbjct: 241 EVISEDEQVYVFPATHYVAGPERMERAIVSIQQELEERLAVLERDGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM++  G+C  IENYSR++ GR PG  P  L +Y PED +L +DESHVT+PQI GMY 
Sbjct: 301 DIEMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS MDNRPL+F+E+      T+ +SATPGS+E+E+  G +VEQI
Sbjct: 361 GDMSRKRTLVEHGFRLPSAMDNRPLKFDEFTERIGQTVYLSATPGSYEIERAHG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++    Q++D+  EI+    +G R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 420 IRPTGLVDPEIIVKPTHGQIDDLMGEIHTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            RY+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+
Sbjct: 480 TRYLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQT+GRAARNVN +VI+YAD +T S+++AI+ET RRR+ Q+ +NK+H I+PQ +++K
Sbjct: 540 RSLIQTVGRAARNVNGQVIMYADQVTDSMRIAINETNRRRDIQMAYNKEHGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI-------------------------SIDAQQLSLSKKKGKAH 763
           I ++ + +  E+A T  +                                 ++++     
Sbjct: 600 IGDITEMLAREEADTDQLVERFNYGKGHRGYNSMITDEQRAAQGKRLDASKMAEEDLGNL 659

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + +L  +M  AA  L FE AAR+RDEI  LK   
Sbjct: 660 IVNLTNEMRSAAGELKFEVAARLRDEIADLKKEL 693


>gi|296129801|ref|YP_003637051.1| excinuclease ABC, B subunit [Cellulomonas flavigena DSM 20109]
 gi|296021616|gb|ADG74852.1| excinuclease ABC, B subunit [Cellulomonas flavigena DSM 20109]
          Length = 701

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/694 (50%), Positives = 485/694 (69%), Gaps = 27/694 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + +  + +  F++ ++Y PSGDQP AI +L   + + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVTDLQRTVAPFEVVSEYTPSGDQPTAIEELAARVRAGEKDVVLLGATGTGKSATTAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAY+ ++DTYIEK+
Sbjct: 62  IEELQRPTLVMAPNKTLAAQLATEFRELLPNNAVEYFVSYYDYYQPEAYIAQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VVS+VSCIYG+G+ + Y   +V L +GD V++ +L
Sbjct: 122 SSINEEVERLRHSATSSLLTRRDVVVVSTVSCIYGLGTPQEYVDRMVTLAVGDQVDRDQL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD++EI P + E++A R+  FG++IE I+  +PLTG
Sbjct: 182 LRKFVTMQYTRNDMAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIEAIATLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             +R+ + + ++  +HYV     +  A+  I+ EL+ RL +LE++ +LLEAQRL+ R TY
Sbjct: 241 DVVRSEQQMHVFPATHYVAGPERMERAIAGIEAELEERLADLERQNKLLEAQRLQMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   GSC  IENYSR++ GR PG  P TL +Y PED LL +DESHVT+PQI  M+ 
Sbjct: 301 DIEMMRQIGSCSGIENYSRHIDGRAPGSAPNTLLDYFPEDFLLVIDESHVTVPQIGAMFE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK +L ++GFRLPS +DNRPLR+EE+      T+ +SATPG +EL    G +VEQI
Sbjct: 361 GDMSRKRSLVDHGFRLPSAIDNRPLRWEEFVERIGQTVYLSATPGDYELSMADG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++  + Q++D+  EI    ++  R+L+T LTK+M+EDLT+YL E+++R
Sbjct: 420 IRPTGLVDPQVVVKPTKGQIDDLLGEIRDRVERDERVLVTTLTKKMSEDLTDYLLEKDVR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSEV TL R+E++R+LRLG++DVLVGINLLREGLD+PE  LVAILDADK+GFLRS 
Sbjct: 480 VRYLHSEVDTLRRVELLRELRLGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAAR+V+ +V +YADT+T +++ A+DET RRREKQ+ +N +H I+PQ +++K
Sbjct: 540 KSLIQTIGRAARHVSGQVHMYADTVTPAMRQALDETDRRREKQIAYNLEHGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS-------------------------LSKKKGKAH 763
           I ++ D +  EDA T  +   A + +                          +       
Sbjct: 600 IGDITDMLAREDADTAELLGGAGRQASRGKAPVPGLGSRPSGGDERTRLAGAAAHDLADL 659

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L +QMH AA  L FE AAR+RDEI  LK   
Sbjct: 660 VQQLTEQMHAAAGELQFELAARLRDEISGLKKEL 693


>gi|260102499|ref|ZP_05752736.1| excision endonuclease subunit UvrB [Lactobacillus helveticus DSM
           20075]
 gi|260083704|gb|EEW67824.1| excision endonuclease subunit UvrB [Lactobacillus helveticus DSM
           20075]
 gi|328461826|gb|EGF34052.1| excinuclease ABC subunit B [Lactobacillus helveticus MTCC 5463]
          Length = 682

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/659 (50%), Positives = 464/659 (70%), Gaps = 4/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + +P +V+ 
Sbjct: 10  FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIANLNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L+ERND IVV+SVS IYG+G  + Y++ ++ +  G   ++  LL  LV  QY R 
Sbjct: 130 ATTSALMERNDVIVVASVSSIYGLGDPKEYARSVLMIHEGQEYDRNVLLRDLVNLQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   + A+R+  FG++I+ I E   LTG+ I   E+I ++
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGNSNHAYRIEFFGDEIDRIVEIDSLTGEVIGERESISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    L  A+K I +E+K+++ + E EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFMTNDDQLRRALKAISKEMKVQVKKFEGEGKLLEAERIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L  +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLTLIDESHATMPEIRAMYNGDRNRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVHQILYVSATPGDYELERT-NHKVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  I+V+Y+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVQYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+QT+GRAAR
Sbjct: 489 RMKILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N N +VI+YADTIT S++ AI+ T RRR+ Q E NK+H I P+++ + + +VI    P  
Sbjct: 549 NANGEVIMYADTITDSMRAAINATKRRRKIQEEFNKEHGITPKTIIKPVQDVISITKPSS 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +    ++   D     L+  + K  +K+L++QM  AA  L+FEEAA +RD I  L+ S
Sbjct: 609 GDKDKKSDSFADLNFDELTASQKKTMIKNLQEQMKEAAKKLDFEEAANLRDAIIDLQKS 667


>gi|121637540|ref|YP_977763.1| excinuclease ABC subunit B [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224990015|ref|YP_002644702.1| excinuclease ABC subunit B [Mycobacterium bovis BCG str. Tokyo 172]
 gi|121493187|emb|CAL71658.1| Excinuclease ABC subunit B uvrB [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224773128|dbj|BAH25934.1| excinuclease ABC subunit B [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 698

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/692 (52%), Positives = 477/692 (68%), Gaps = 30/692 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 7   FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 67  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQSGGEFVEQVIRPTGLVDPKVV 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D +  E 
Sbjct: 546 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 605

Query: 741 AATTNISIDA---------------------------QQLSLSKKKGKAHLKSLRKQMHL 773
             T  + +                                ++ + +    +K L  QM  
Sbjct: 606 DDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMA 665

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           AA +L FE AAR RDEI  LK     +G+D +
Sbjct: 666 AARDLQFELAARFRDEIADLKRE--LRGMDAA 695


>gi|289427109|ref|ZP_06428825.1| excinuclease ABC, B subunit [Propionibacterium acnes J165]
 gi|295130375|ref|YP_003581038.1| excinuclease ABC, B subunit [Propionibacterium acnes SK137]
 gi|289159578|gb|EFD07766.1| excinuclease ABC, B subunit [Propionibacterium acnes J165]
 gi|291376000|gb|ADD99854.1| excinuclease ABC, B subunit [Propionibacterium acnes SK137]
 gi|313764686|gb|EFS36050.1| excinuclease ABC subunit B [Propionibacterium acnes HL013PA1]
 gi|313772455|gb|EFS38421.1| excinuclease ABC subunit B [Propionibacterium acnes HL074PA1]
 gi|313791735|gb|EFS39846.1| excinuclease ABC subunit B [Propionibacterium acnes HL110PA1]
 gi|313802181|gb|EFS43413.1| excinuclease ABC subunit B [Propionibacterium acnes HL110PA2]
 gi|313807290|gb|EFS45777.1| excinuclease ABC subunit B [Propionibacterium acnes HL087PA2]
 gi|313815753|gb|EFS53467.1| excinuclease ABC subunit B [Propionibacterium acnes HL059PA1]
 gi|313818336|gb|EFS56050.1| excinuclease ABC subunit B [Propionibacterium acnes HL046PA2]
 gi|313820098|gb|EFS57812.1| excinuclease ABC subunit B [Propionibacterium acnes HL036PA1]
 gi|313823093|gb|EFS60807.1| excinuclease ABC subunit B [Propionibacterium acnes HL036PA2]
 gi|313825631|gb|EFS63345.1| excinuclease ABC subunit B [Propionibacterium acnes HL063PA1]
 gi|313830710|gb|EFS68424.1| excinuclease ABC subunit B [Propionibacterium acnes HL007PA1]
 gi|313838508|gb|EFS76222.1| excinuclease ABC subunit B [Propionibacterium acnes HL086PA1]
 gi|314915181|gb|EFS79012.1| excinuclease ABC subunit B [Propionibacterium acnes HL005PA4]
 gi|314918365|gb|EFS82196.1| excinuclease ABC subunit B [Propionibacterium acnes HL050PA1]
 gi|314919854|gb|EFS83685.1| excinuclease ABC subunit B [Propionibacterium acnes HL050PA3]
 gi|314925326|gb|EFS89157.1| excinuclease ABC subunit B [Propionibacterium acnes HL036PA3]
 gi|314931869|gb|EFS95700.1| excinuclease ABC subunit B [Propionibacterium acnes HL067PA1]
 gi|314956027|gb|EFT00425.1| excinuclease ABC subunit B [Propionibacterium acnes HL027PA1]
 gi|314958421|gb|EFT02524.1| excinuclease ABC subunit B [Propionibacterium acnes HL002PA1]
 gi|314960228|gb|EFT04330.1| excinuclease ABC subunit B [Propionibacterium acnes HL002PA2]
 gi|314963035|gb|EFT07135.1| excinuclease ABC subunit B [Propionibacterium acnes HL082PA1]
 gi|314968134|gb|EFT12233.1| excinuclease ABC subunit B [Propionibacterium acnes HL037PA1]
 gi|314973136|gb|EFT17232.1| excinuclease ABC subunit B [Propionibacterium acnes HL053PA1]
 gi|314976305|gb|EFT20400.1| excinuclease ABC subunit B [Propionibacterium acnes HL045PA1]
 gi|314978214|gb|EFT22308.1| excinuclease ABC subunit B [Propionibacterium acnes HL072PA2]
 gi|314983486|gb|EFT27578.1| excinuclease ABC subunit B [Propionibacterium acnes HL005PA1]
 gi|314987678|gb|EFT31769.1| excinuclease ABC subunit B [Propionibacterium acnes HL005PA2]
 gi|314990158|gb|EFT34249.1| excinuclease ABC subunit B [Propionibacterium acnes HL005PA3]
 gi|315077497|gb|EFT49555.1| excinuclease ABC subunit B [Propionibacterium acnes HL053PA2]
 gi|315080283|gb|EFT52259.1| excinuclease ABC subunit B [Propionibacterium acnes HL078PA1]
 gi|315084545|gb|EFT56521.1| excinuclease ABC subunit B [Propionibacterium acnes HL027PA2]
 gi|315085882|gb|EFT57858.1| excinuclease ABC subunit B [Propionibacterium acnes HL002PA3]
 gi|315088701|gb|EFT60677.1| excinuclease ABC subunit B [Propionibacterium acnes HL072PA1]
 gi|315096331|gb|EFT68307.1| excinuclease ABC subunit B [Propionibacterium acnes HL038PA1]
 gi|315098310|gb|EFT70286.1| excinuclease ABC subunit B [Propionibacterium acnes HL059PA2]
 gi|315100995|gb|EFT72971.1| excinuclease ABC subunit B [Propionibacterium acnes HL046PA1]
 gi|327325964|gb|EGE67754.1| excinuclease ABC subunit B [Propionibacterium acnes HL096PA2]
 gi|327332165|gb|EGE73902.1| excinuclease ABC subunit B [Propionibacterium acnes HL096PA3]
 gi|327442786|gb|EGE89440.1| excinuclease ABC subunit B [Propionibacterium acnes HL013PA2]
 gi|327446156|gb|EGE92810.1| excinuclease ABC subunit B [Propionibacterium acnes HL043PA2]
 gi|327447865|gb|EGE94519.1| excinuclease ABC subunit B [Propionibacterium acnes HL043PA1]
 gi|327451008|gb|EGE97662.1| excinuclease ABC subunit B [Propionibacterium acnes HL087PA3]
 gi|327452913|gb|EGE99567.1| excinuclease ABC subunit B [Propionibacterium acnes HL092PA1]
 gi|327453643|gb|EGF00298.1| excinuclease ABC subunit B [Propionibacterium acnes HL083PA2]
 gi|328753039|gb|EGF66655.1| excinuclease ABC subunit B [Propionibacterium acnes HL087PA1]
 gi|328753696|gb|EGF67312.1| excinuclease ABC subunit B [Propionibacterium acnes HL020PA1]
 gi|328759215|gb|EGF72831.1| excinuclease ABC subunit B [Propionibacterium acnes HL025PA2]
 gi|328760537|gb|EGF74105.1| excinuclease ABC subunit B [Propionibacterium acnes HL099PA1]
 gi|332675214|gb|AEE72030.1| UvrABC system protein B [Propionibacterium acnes 266]
          Length = 701

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/694 (51%), Positives = 483/694 (69%), Gaps = 27/694 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + + ++ +  F + +++ PSGDQP AIA+L K ++S E+  +LLG TG+GKT T+A +
Sbjct: 2   RPVTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
            E +QRP +VM PNK LAAQ   E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+
Sbjct: 62  AERLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+N++++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y   ++ L++G   ++ EL
Sbjct: 122 SSLNKEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R DI   RGTFRV GD++EIFP + E+ A RV  FG++IE ++  +PLTG
Sbjct: 182 LRDLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I   E + ++  +HYV     +  A+  I++EL+ RL  LE++G+LLEAQRL  R TY
Sbjct: 241 EIISEDEQVYVFPATHYVAGPERMERAIASIQQELEERLAVLERDGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM++  G+C  IENYSR++ GR PG  P  L +Y PED +L +DESHVT+PQI GMY 
Sbjct: 301 DIEMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS MDNRPL+F+E+      T+ +SATPGS+E E+  G +VEQI
Sbjct: 361 GDMSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERAHG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++  R Q++D+  EI     +G R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 420 IRPTGLVDPEIIVKPTRGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            RY+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+
Sbjct: 480 TRYLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++K
Sbjct: 540 RSLIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISID-------------------------AQQLSLSKKKGKAH 763
           I ++ + +  E A T  +                                 ++++     
Sbjct: 600 IGDITEMLAREGADTDELVEKFNYGKGHRGYNSMITDEQRAAQGRRLDVSKMAEEDLGKL 659

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +  L  +M  AA  L FE AAR+RDEI  LK   
Sbjct: 660 IVDLTTEMRSAAGELKFEVAARLRDEIADLKKEL 693


>gi|306835986|ref|ZP_07468978.1| excision endonuclease subunit UvrB [Corynebacterium accolens ATCC
           49726]
 gi|304568152|gb|EFM43725.1| excision endonuclease subunit UvrB [Corynebacterium accolens ATCC
           49726]
          Length = 697

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/696 (51%), Positives = 483/696 (69%), Gaps = 10/696 (1%)

Query: 117 LKNGKIWTPHRSWSI-NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
                   P+    +     +    FQ+ +DY P+GDQPAAI +L + ++  E+  +L+G
Sbjct: 3   FAAEHPLIPNSEHRVVGEVERTPGKFQVVSDYEPAGDQPAAIEELNERLNRDERDVVLMG 62

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GK+ T A +IE  QRP +VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPE
Sbjct: 63  ATGTGKSATAAWLIEKQQRPTLVMAPNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPE 122

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AY+ +TDTYIEK+SSINE ++R+RHSAT  LL R D +VVSSVSCIYG+G+ +SY    V
Sbjct: 123 AYIAQTDTYIEKDSSINEDVERLRHSATSGLLSRRDVVVVSSVSCIYGLGTPQSYLDRSV 182

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            + + + +++   L  LV  QY+R D+G  RGTFRV GD+++I P++ E+ A R+  FG+
Sbjct: 183 IIAVDEELDRDRFLRLLVDIQYERNDVGFTRGTFRVKGDTVDIIPAY-EERAVRIEFFGD 241

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ +   +P+TG  I  V+ ++I+  +HYV     +  A+  IKEEL  RL +LE  G+
Sbjct: 242 DIDSLYYIHPVTGDVIEQVDEVRIFPATHYVAGPERMEKAVADIKEELAERLEDLENRGK 301

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRL  R  YDLEM+E  G C  IENYSR++ GR  G  P TL +Y PED L  +DE
Sbjct: 302 LLEAQRLRMRTEYDLEMIEQVGFCSGIENYSRHVDGRPAGSAPATLLDYFPEDFLTIIDE 361

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVT+PQI GMY GD  RK  L E+GFRLPS +DNRPL F+E+      T+ +SATPG +
Sbjct: 362 SHVTVPQIGGMYEGDMSRKRNLVEFGFRLPSAVDNRPLTFDEFEERVGQTVYMSATPGDF 421

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           E+    G  VEQ+IRPTGLVDP V ++  + Q++D+ DE+        R+L+T LTKRMA
Sbjct: 422 EMTSSGGEFVEQVIRPTGLVDPKVTVKPTKGQIDDLIDEVRGRIAVKERVLVTTLTKRMA 481

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL E+ I+VRY+HS++ TL+R+E++R LR G++DVLVGINLLREGLD+PE  LVA
Sbjct: 482 EDLTDYLLEQGIKVRYLHSDIDTLQRVELLRQLRQGEYDVLVGINLLREGLDLPEVSLVA 541

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS TSLIQTIGRAARNV+ +VI+YAD IT S+Q AIDET RRREKQ+ +N
Sbjct: 542 ILDADKEGFLRSTTSLIQTIGRAARNVSGEVIMYADKITDSMQEAIDETERRREKQIAYN 601

Query: 716 KKHNINPQSVKEKIMEVIDPILL---EDAATTNISIDAQQL---SLSKKKGKAHLKSLRK 769
           K+H ++PQ +++KI +++D +     E+AA ++ S   ++    S++  + +A +  L+ 
Sbjct: 602 KEHGVDPQPLRKKIADILDQVYENNGEEAAESDPSAVVEKRDVSSMATDEVEALINDLQA 661

Query: 770 QMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           QM  AA  L FE A R+RDEI  LK     +GL ++
Sbjct: 662 QMGAAARELKFELAGRLRDEIADLKKE--LRGLKEA 695


>gi|121997343|ref|YP_001002130.1| excinuclease ABC subunit B [Halorhodospira halophila SL1]
 gi|121588748|gb|ABM61328.1| Excinuclease ABC subunit B [Halorhodospira halophila SL1]
          Length = 676

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/660 (56%), Positives = 485/660 (73%), Gaps = 6/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AI +L+ GI S    Q LLGVTGSGKTFT+A VIE +QRPAI++A
Sbjct: 5   FKLNARFQPAGDQPQAIDELVDGIESGLSDQTLLGVTGSGKTFTVANVIERLQRPAILLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E + F P N VEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMREFLPENRVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LE  D ++V+SVS IYG+G  ++Y  M++ L  G+ ++Q+ +L  L + QY R 
Sbjct: 125 SATKAVLEHKDTVIVASVSSIYGLGDPQAYMSMLLHLVRGEQIDQRAILRRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGT+R  G+ I+IFP+   + A RV +F ++IEEIS F PLTG+ +R V  + IY
Sbjct: 185 DTELTRGTYRARGEVIDIFPAESPEEAVRVQLFDDEIEEISWFDPLTGEVLRRVPRVTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTP+  ++ A++ IKEEL+ RL EL    +L+EAQRLE+R  +D+EM+   G C 
Sbjct: 245 PKTHYVTPKEQIHQAVEQIKEELRERLDELRAADKLVEAQRLEERTRFDMEMMLELGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+YIP +++LF+DESHVT+PQI GMY+GD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYIPPEAVLFIDESHVTVPQIGGMYKGDRSRKQTLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+  L P T+ VSATPG +E E   G +VEQ++RPTGLVDP VE
Sbjct: 365 GFRLPSALDNRPLKFEEFRRLAPQTVYVSATPGPFEEEHA-GQVVEQVVRPTGLVDPEVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+DVY EI   A++  R+L+T LTKRMAEDLTEYL E  +RVRY+HS+V T+E
Sbjct: 424 VRPATAQVDDVYGEIRARAERDERVLVTTLTKRMAEDLTEYLEENGVRVRYLHSDVDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 484 RTEIIRDLRLGHFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTRSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-----P 735
           N++ + ILYAD +T S++ AIDET RRR KQ+ HN+ H I PQ +++++ ++++      
Sbjct: 544 NIDGRAILYADQMTDSMRRAIDETERRRAKQIAHNEAHGITPQGIRKEVPDIMERGGVPA 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                 A        +   LS  +    ++ L K+M   A  L FEEAAR+RDEI+R++ 
Sbjct: 604 PGAPQRAARVAEEAGEYAGLSPAEAVRRIRELEKRMQEHARELEFEEAARVRDEIRRIEQ 663


>gi|302868823|ref|YP_003837460.1| excinuclease ABC subunit B [Micromonospora aurantiaca ATCC 27029]
 gi|315504707|ref|YP_004083594.1| excinuclease abc, b subunit [Micromonospora sp. L5]
 gi|302571682|gb|ADL47884.1| excinuclease ABC, B subunit [Micromonospora aurantiaca ATCC 27029]
 gi|315411326|gb|ADU09443.1| excinuclease ABC, B subunit [Micromonospora sp. L5]
          Length = 701

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/690 (51%), Positives = 475/690 (68%), Gaps = 28/690 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +++ P+GDQPAAI +L + +   ++  +LLG TG+GK+ T A ++E +QRP +V+A
Sbjct: 12  FQVVSEFQPAGDQPAAIDELERRVRRGDRNTVLLGATGTGKSATTAWLVERLQRPTLVLA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL  EF    PHNAVEYFVSYYDYYQPEAY+P+TDTYIEK+SSINE+++R+RH
Sbjct: 72  PNKTLAAQLAKEFGELMPHNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSINEEVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D IVV++VS IYG+G+ E Y    V++K+G  +++ +LL  LV  QY R 
Sbjct: 132 SATMSLLTRRDVIVVATVSAIYGLGTPEEYLDRAVRVKVGQELDRDQLLRRLVDIQYARN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P++ E++A R+ +FG++IE++    PLTG  +R V+++ I+
Sbjct: 192 DMAFQRGTFRVRGDTLEIIPAY-EELAVRIELFGDEIEKLYYLNPLTGDVVREVDSLMIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY      +  A++ I+ EL  RL ELE++G+LLEAQRL  R TYD+EM+   G C 
Sbjct: 251 PATHYAAGPERMERAIRDIEAELGERLAELERQGKLLEAQRLRMRTTYDIEMMRQVGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR PG PP  L +Y P+D L  VDESHVTIPQI GMY GD  RK  L ++
Sbjct: 311 GIENYSMHIDGRLPGSPPHCLLDYFPDDFLTVVDESHVTIPQIGGMYEGDASRKRMLIDH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRF+E+       + +SATPG WELEQ QG  VEQ+IRPTGL+DP V 
Sbjct: 371 GFRLPSAADNRPLRFDEFLERVGQMVFLSATPGPWELEQAQGEFVEQVIRPTGLIDPEVV 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI L  ++  R+L+T LTK+MAEDL++YL E  IRVRY+HSEV TL 
Sbjct: 431 VKPTKGQIDDLMHEIKLRTERDERVLVTTLTKKMAEDLSDYLLENGIRVRYLHSEVDTLR 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 491 RVELLRELRKGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGRSLIQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+  AIDET RRR KQ+ HN+ + I P+ +++KI +++D I  E 
Sbjct: 551 NVSGQVHMYADKITPSMADAIDETNRRRAKQIAHNEANGIKPEPLRKKIHDILDDIYREA 610

Query: 741 AATTN-------------------------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAA 775
             T N                          +    +  +++      ++ L  QM  AA
Sbjct: 611 EDTENSNVGGAVRQLSRGKAPVKETRSRRGAAATPSREGMARADLANLIQELNDQMLAAA 670

Query: 776 DNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             L FE AARIRDE+  LK     +G+D +
Sbjct: 671 RELQFELAARIRDEVADLKKE--LRGMDAA 698


>gi|313809797|gb|EFS47518.1| excinuclease ABC subunit B [Propionibacterium acnes HL083PA1]
          Length = 701

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/694 (51%), Positives = 482/694 (69%), Gaps = 27/694 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + + ++ +  F + +++ PSGDQP AIA+L K ++S E+  +LLG TG+GKT T+A +
Sbjct: 2   RPVTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
            E +QRP +VM PNK LAAQ   E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+
Sbjct: 62  AERLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+N++++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y   ++ L++G   ++ EL
Sbjct: 122 SSLNKEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R DI   RGTFRV GD++EIFP + E+ A RV  FG++IE ++  +PLTG
Sbjct: 182 LRDLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I   E + ++  +HYV     +  A+  I++EL+ RL  LE++G+LLEAQRL  R TY
Sbjct: 241 EIISEDEQVYVFPATHYVAGPERMERAIASIQQELEERLAVLERDGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM++  G+C  IENYSR++ GR PG  P  L +Y PED +L +DESHVT+PQI GMY 
Sbjct: 301 DIEMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS MDNRPL+F+E+      T+ +SATPGS+E E+  G +VEQI
Sbjct: 361 GDMSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERAHG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++  R Q++D+  EI     +G R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 420 IRPTGLVDPEIIVKPTRGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            RY+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+
Sbjct: 480 TRYLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++K
Sbjct: 540 RSLIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISID-------------------------AQQLSLSKKKGKAH 763
           I ++ + +    A T  +                                 ++++     
Sbjct: 600 IGDITEMLARGGADTDELVEKFNYGKGHRGYNSMITDEQRAAQGRRLDVSKMAEEDLGKL 659

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +  L  +M  AA  L FE AAR+RDEI  LK   
Sbjct: 660 IVDLTTEMRSAAGELKFEVAARLRDEIADLKKEL 693


>gi|251799690|ref|YP_003014421.1| excinuclease ABC subunit B [Paenibacillus sp. JDR-2]
 gi|247547316|gb|ACT04335.1| excinuclease ABC, B subunit [Paenibacillus sp. JDR-2]
          Length = 667

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/658 (53%), Positives = 465/658 (70%), Gaps = 2/658 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ+++DY P GDQP AI +L++G+++ E  Q LLG TG+GKT+T+A  I  + RP +V+
Sbjct: 11  LFQLKSDYTPQGDQPGAIRKLVEGVNNGEAKQTLLGATGTGKTYTIANTIAELNRPTLVI 70

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQL SEFK FFP NAV YFVSYYDY+QPEAY+P TDTYIEK+SSIN++ID++R
Sbjct: 71  AHNKTLAAQLCSEFKEFFPDNAVSYFVSYYDYFQPEAYIPSTDTYIEKDSSINDEIDKLR 130

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT SL ER D I+V+SVSCIYG+GS   Y  +++ L++G    +  +L  LV  QY+R
Sbjct: 131 HSATSSLFERRDVIIVASVSCIYGLGSPSEYGSLVLSLRVGMEKSRDTILHKLVDIQYQR 190

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI  IRGTFRV GD +EIFP    + A RV +FG++IE I+E   LTG+ +   + + I
Sbjct: 191 NDINFIRGTFRVRGDIVEIFPVANNERAIRVELFGDEIERITEIDVLTGEIVSERDHVAI 250

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT   T+  A+  I+ EL+ RL EL +EG+LLEAQRLEQR  YDLEM+   G C
Sbjct: 251 FPASHFVTHEETMKVALGNIERELEERLAELREEGKLLEAQRLEQRTRYDLEMMAEMGFC 310

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS  LT R  G  P TL +Y P+D L+ +DESHVT+PQI  MY GD  RK  L  
Sbjct: 311 SGIENYSGPLTFRERGATPYTLMDYFPDDMLIVIDESHVTLPQIRAMYNGDRARKEMLVN 370

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEE+       I VSATPG +ELE C   +VEQIIRPTGL+DP +
Sbjct: 371 HGFRLPSALDNRPLRFEEFEGKSKQQIYVSATPGPYELEHCP-TMVEQIIRPTGLLDPII 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + Q++D+  EI     +  R+L+T LTK+MAEDLT+Y  E  I+VRY+HS++KTL
Sbjct: 430 EVRPTKGQIDDLLVEIRDRIAKDERVLVTTLTKKMAEDLTDYFKEIGIKVRYLHSDIKTL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERI I+RDLRLG F VLVGINLLREGLD+PE  LV+ILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 490 ERIAILRDLRLGTFHVLVGINLLREGLDLPEVSLVSILDADKEGFLRSERSLIQTIGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN + +VI+Y D IT S+  A+ ET RRR  Q+ +N++H I PQ++++K+ + I    + 
Sbjct: 550 RNSDGRVIMYGDKITDSMDKALKETERRRAIQIAYNEEHGITPQTIRKKVHDDIKATKVA 609

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +  +  ++       +SKK+ +A L+ L  +M  AA NL FE AA +RD +  LK+  
Sbjct: 610 EEKSEYLT-GVGSEKMSKKERQALLQRLEAEMKDAAKNLQFERAAELRDALLELKAEM 666


>gi|148657804|ref|YP_001278009.1| excinuclease ABC subunit B [Roseiflexus sp. RS-1]
 gi|148569914|gb|ABQ92059.1| excinuclease ABC, B subunit [Roseiflexus sp. RS-1]
          Length = 670

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/662 (52%), Positives = 468/662 (70%), Gaps = 4/662 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P+GDQP AIAQL+ GI +  K Q LLG TG+GKT TMA V   ++RPA+VMA
Sbjct: 3   FRIEAPFQPAGDQPKAIAQLVAGIRAGYKHQTLLGATGTGKTLTMAHVFSQLERPALVMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L +QLY+EF+   P  AVE F+SYYD Y PEAYVP  D YIEKE+ INE+IDR+RH
Sbjct: 63  HNKTLVSQLYAEFRELLPDAAVEMFISYYDIYTPEAYVPSKDLYIEKEAEINEEIDRLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++L  R D ++V+SVS IYG+GS   Y Q+++ +++G+   + +LL  L+  Q++R 
Sbjct: 123 AATQALFTRRDVLIVASVSAIYGLGSPHEYGQVVIPIRVGEVRNRDKLLRQLLDLQFERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+++IFP++ E +A RV  +G+++E I+EF PLTG+ + N   + IY
Sbjct: 183 DVDFHRGTFRVRGDTLDIFPANQE-IALRVEFWGDEVERITEFDPLTGEVLLNRTAVDIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T   TL  A+  I+ EL+ R+ ELE++G+ LEA RL+QR  YDLEML   G C 
Sbjct: 242 PAKHFITTAETLKLAIADIQAELEARVAELEQQGKFLEAARLKQRTNYDLEMLSEVGYCS 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L  R  G+ P TL +Y P+D +LFVDESH+T+PQI GMY GD  RK TL EY
Sbjct: 302 GIENYSRHLDRRAAGQTPWTLLDYFPDDFILFVDESHITLPQIRGMYAGDRSRKETLVEY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+       I VSATPG +E E     IVEQIIRPTGL+DP VE
Sbjct: 362 GFRLPSALDNRPLRFDEFERHIHQAIYVSATPGPYEYEHSAQ-IVEQIIRPTGLLDPIVE 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+  EI    Q+G R L+T LTKRMAEDL +YL E  IR  Y+HS+++TLE
Sbjct: 421 VRPTRGQIDDLVGEIKRRVQKGQRALVTTLTKRMAEDLADYLKEMGIRTSYLHSDIETLE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS +SLIQ IGRAAR
Sbjct: 481 RVEILRDLRLGVYDVVVGINLLREGLDLPEVSLVAILDADKEGYLRSGSSLIQIIGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--LL 738
           ++   VI+YADTIT+S++ AIDET RRR  Q  +N++HNI P  + + + ++ D +  + 
Sbjct: 541 HIEGTVIMYADTITQSMRTAIDETNRRRAIQEAYNREHNITPVGISKAVRDLTDRVRKVA 600

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           E+     ++    +L + K +    +K L KQM  AA +L FE+AA +RD+I  L+ +  
Sbjct: 601 EERGVYQVAEAPAELPIPKDEIVKLIKELEKQMKQAAKDLAFEKAAALRDQIVELRRTLA 660

Query: 799 FQ 800
            +
Sbjct: 661 LE 662


>gi|325679137|ref|ZP_08158731.1| excinuclease ABC, B subunit [Ruminococcus albus 8]
 gi|324109261|gb|EGC03483.1| excinuclease ABC, B subunit [Ruminococcus albus 8]
          Length = 656

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/659 (53%), Positives = 468/659 (71%), Gaps = 5/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  FQ+ +DY  SGDQP A+  L+KGI S  + Q L+GVTGSGKTFTMA VIE + RP +
Sbjct: 1   MDHFQLVSDYKLSGDQPQAVDALVKGIQSGMREQTLMGVTGSGKTFTMANVIERLNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NKILAAQL SEFK FFP+NAVEYFVSYYDYYQPEAYVP TD YIEK+SSIN++ID+
Sbjct: 61  VLAHNKILAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDVYIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT ++ ER D I+V+SVSCIY +G    Y  M+V ++ G    + EL++ LV  QY
Sbjct: 121 LRHSATSAITERRDVIIVASVSCIYSLGDPSEYKSMVVSIRKGAEKSRDELIAQLVGIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI  +R  FRV GD +EIFP++  D A RV  FG++I+ I+E   LTG+++  +   
Sbjct: 181 ERNDINFVRNKFRVRGDIVEIFPANSTDTALRVEFFGDEIDRITEVNVLTGERLSELTHA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++  SHY+  R  +  A+  IKEEL  R+   E +G L+EAQR++QR  YD+EMLE  G
Sbjct: 241 AVFPASHYIVGREKMLDAIGEIKEELAERVKYFEDKGMLIEAQRIQQRTNYDMEMLEEIG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L  R  G  P TL +++P+D LL VDESHV++PQ+ GMY GD  RK TL
Sbjct: 301 FCSGIENYSRVLARRPKGAVPFTLLDFMPDDFLLMVDESHVSLPQVRGMYAGDRARKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL+F+E+       I VSATPG  E E+    IVEQ+IRPTGL+DP
Sbjct: 361 VNYGFRLPSALDNRPLQFDEFYSHINQAIFVSATPGPIEKEKSAQ-IVEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R +  Q+ED+  EIN   ++  R+L+T LTK+MAEDLT YL   +++VRYMH ++ 
Sbjct: 420 LISVRPSDGQIEDLLSEINQRVEKNQRVLVTTLTKKMAEDLTAYLKGFDVKVRYMHHDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+++LIQTIGR
Sbjct: 480 SIERMEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSESALIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD++T+S++ AI ET RRR  Q+++N++H I P+++ + I +VI+   
Sbjct: 540 AARNAEGTVIMYADSVTRSMENAIRETERRRAIQMQYNEEHGITPKTIVKDIRDVIEIST 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            E+A  +      Q   LSK + +  ++ L K+M  AA  L FE AA +RD+I  LK  
Sbjct: 600 KEEAEYSAR----QATKLSKAEQQRLIEKLTKEMKEAAKLLEFEHAAFLRDKIAELKGE 654


>gi|187776676|ref|ZP_02993149.1| hypothetical protein CLOSPO_00191 [Clostridium sporogenes ATCC
           15579]
 gi|187775335|gb|EDU39137.1| hypothetical protein CLOSPO_00191 [Clostridium sporogenes ATCC
           15579]
          Length = 665

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/658 (52%), Positives = 469/658 (71%), Gaps = 2/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ + ++P+GDQP AI  + KGI + EK Q L+GVTGSGKTFTMA +IE +Q+P +
Sbjct: 4   MSQFKVISKFNPTGDQPKAIKAIAKGIENGEKFQTLIGVTGSGKTFTMANIIEKVQKPTL 63

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF++FFP+++VEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID+
Sbjct: 64  VLAHNKTLAAQLCSEFRDFFPNSSVEYFVSYYDYYQPEAYVAQSDTYIEKDASINDEIDK 123

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  LV+ QY
Sbjct: 124 LRHSATAALFERRDVIIVASVSCIYGLGNPEEYKKLTISLREGMEKDRDEIIKKLVEIQY 183

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD ++IFP+   + A RV  FG++I+ I EF  LTG+ I  ++ +
Sbjct: 184 ERNDIDFSRGTFRVKGDVLDIFPAASSNKAIRVEFFGDEIDRIKEFDSLTGETITKLKHV 243

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+ T +  L  A+K I+EEL+ R+ EL  + ++LEAQRL+QR  +D+EM+   G
Sbjct: 244 SIFPASHFATSKDRLEIAIKSIEEELEERVKELVSQDKILEAQRLKQRTNFDIEMMREVG 303

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L GR  G  P TL +Y P+D LLF+DESHVT+PQ+  M  GD  RK +L
Sbjct: 304 YCTGIENYSRVLDGRAKGTSPQTLLDYFPDDFLLFIDESHVTLPQVKAMQAGDKSRKDSL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP   DNRPL F E+       + VSATP  +ELE     I EQ+IRPTGL+DP
Sbjct: 364 VEYGFRLPCAYDNRPLTFNEFENKLNQVVFVSATPAKYELEHSTN-IAEQVIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++  + Q++D+Y  I    ++G RIL+T LTK+MAEDLT+YL E  I+ RY+HS++ 
Sbjct: 423 EIIVKPVKGQIDDLYANIQETIKRGFRILVTTLTKKMAEDLTDYLKEMGIKTRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++II DLR G+F VLVGINLLREGLDIPE  LV ILDADKEGFLRS+TSLIQT+GR
Sbjct: 483 TIERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+Y D ITKS++  I+ET RRR+ Q+E+N+KH I P+++ + I EVI    
Sbjct: 543 AARNSESKVIMYGDVITKSMEKTIEETNRRRKIQMEYNEKHGIVPKTIIKDIREVIQISD 602

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + +      +++    S +       ++   K+M  AA NL FE+AA +RD I +LK 
Sbjct: 603 IAEEREEYDNLNEALKSYN-NDIDKLIEQYEKEMREAAQNLQFEKAAHLRDVIYKLKK 659


>gi|294628749|ref|ZP_06707309.1| excinuclease ABC, B subunit [Streptomyces sp. e14]
 gi|292832082|gb|EFF90431.1| excinuclease ABC, B subunit [Streptomyces sp. e14]
          Length = 708

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/701 (50%), Positives = 477/701 (68%), Gaps = 43/701 (6%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y PSGDQP AIA+L + I + EK  +LLG TG+GK+ T A +IE +QRP +
Sbjct: 1   MAPFEVVSPYQPSGDQPQAIAELARRIQAGEKDVVLLGATGTGKSATTAWMIEKLQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE+++R
Sbjct: 61  VMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V L++GD V++ ELL   V  QY
Sbjct: 121 LRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLRVGDEVDRDELLRRFVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ I + + +
Sbjct: 181 TRNDLAFSRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEIISDDQQL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++  SHYV     +  A+  I++EL  RL ELEK+G+LLEAQRL  R TYD+EML   G
Sbjct: 240 YVFPASHYVAGPERMERAVNGIEKELGERLTELEKQGKLLEAQRLRMRTTYDIEMLRQIG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           +C  +ENYS +   R PG PP TL +Y P+D LL +DESHVT+PQI  MY GD  RK TL
Sbjct: 300 TCSGVENYSMHFDDRAPGTPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G  VEQIIRPTGLVDP
Sbjct: 360 VEHGFRLPSALDNRPLKWEEFQERIGQTVYLSATPGQYELSRSDGQ-VEQIIRPTGLVDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+VRY+HS+V 
Sbjct: 419 EVVVKPTEGQIDDLVHEIRARTEKDERVLVTTLTKKMAEDLTDYFLELGIQVRYLHSDVD 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGR
Sbjct: 479 TLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ +V +YAD IT +++ AIDET RRREKQ+ +NK H I+PQ +++KI +++  I 
Sbjct: 539 AARNVSGQVHMYADKITPAMEKAIDETNRRREKQIAYNKAHGIDPQPLRKKINDIVAQIA 598

Query: 738 LEDAATTNI-----------------------------------------SIDAQQLSLS 756
            E+  T  +                                         + +       
Sbjct: 599 REEVDTEQLLGTGYRKTKDGKGAKAPVPALGDQAVKGGKGAKAGKSAKGKAAETVPTDRP 658

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             +    ++ + ++M  AA  L FE AAR+RDE+  +K   
Sbjct: 659 AAQLAEQIEQMTERMRAAAAELQFEVAARLRDEVSEMKKEL 699


>gi|313827874|gb|EFS65588.1| excinuclease ABC subunit B [Propionibacterium acnes HL063PA2]
 gi|315108277|gb|EFT80253.1| excinuclease ABC subunit B [Propionibacterium acnes HL030PA2]
          Length = 701

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/694 (51%), Positives = 483/694 (69%), Gaps = 27/694 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + + ++ +  F + +++ PSGDQP AIA+L K ++S E+  +LLG TG+GKT T+A +
Sbjct: 2   RPVTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
            E +QRP +VM PNK LAAQ   E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+
Sbjct: 62  AERLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+N++++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y   ++ L++G   ++ EL
Sbjct: 122 SSLNKEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R DI   RGTFRV GD++EIFP + E+ A RV  FG++IE ++  +PLTG
Sbjct: 182 LRDLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I   E + ++  +HYV     +  A+  I++EL+ RL  LE++G+LLEAQRL  R TY
Sbjct: 241 EIISEDEQVYVFPATHYVAGPERMERAIASIQQELEERLAVLERDGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM++  G+C  IENYSR++ GR PG  P  L +Y PED +L +DESHVT+PQI GMY 
Sbjct: 301 DIEMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS MDNRPL+F+E+      T+ +SATPGS+E E+  G +VEQI
Sbjct: 361 GDMSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERVHG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++  R Q++D+  EI     +G R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 420 IRPTGLVDPEIIVKPTRGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            RY+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+
Sbjct: 480 TRYLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++K
Sbjct: 540 RSLIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISID-------------------------AQQLSLSKKKGKAH 763
           I ++ + +  E A T  +                                 ++++     
Sbjct: 600 IGDITEMLAREGADTDELVEKFNYGKGHRGYNSMITDEQRAAQGRRLDVSKMAEEDLGKL 659

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +  L  +M  AA  L FE AAR+RDEI  LK   
Sbjct: 660 IVDLTTEMRSAAGELKFEVAARLRDEIADLKKEL 693


>gi|21324137|dbj|BAB98762.1| Helicase subunit of the DNA excision repair complex
           [Corynebacterium glutamicum ATCC 13032]
          Length = 699

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/698 (50%), Positives = 478/698 (68%), Gaps = 11/698 (1%)

Query: 116 LLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
                 + +      +    +    F + +++ P+GDQPAAI +L + +   E+  +L+G
Sbjct: 3   FAAEHPVLSHSEHRPVGEIERSDDKFVVVSEFEPAGDQPAAIKELDERLDRGERDVVLMG 62

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GK+ T A +IE  QRPA+VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPE
Sbjct: 63  ATGTGKSATAAWLIEKQQRPALVMAPNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPE 122

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AY+ +TDTYIEK+SSINE ++R+RHSAT SLL R D +VVSSVSCIYG+G+ +SY    V
Sbjct: 123 AYIAQTDTYIEKDSSINEDVERLRHSATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSV 182

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L +G+ +++   L  LV  QY+R D+G  RG FRV GD+++I P++ E++A R+  FG+
Sbjct: 183 VLNVGEEIDRDRFLRLLVDIQYERNDVGFTRGAFRVKGDTVDIIPAY-EELAVRIEFFGD 241

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ +   +PLTG  IR V  I+I+  +HYV     +  A+  IK EL++RL +LE  G+
Sbjct: 242 EIDALYYIHPLTGDTIRQVNEIRIFPATHYVAGPERMEKAVADIKAELEVRLADLENRGK 301

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRL  R  YDLEM+E  G C  IENYSR++ GR  G  P TL +Y PED L  +DE
Sbjct: 302 LLEAQRLRMRTEYDLEMIEQVGFCSGIENYSRHIDGRGEGTAPATLIDYFPEDFLTIIDE 361

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVT+PQI GM+ GD  RK  L E+GFRLPS MDNRPL +EE++  R  T+ +SATPG +
Sbjct: 362 SHVTVPQIGGMFEGDMSRKRNLVEFGFRLPSAMDNRPLTWEEFDERRGQTVFMSATPGKF 421

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           E+    G  VEQ+IRPTGLVDP V ++  + Q++D+  EI     +  R+L+T LTK+MA
Sbjct: 422 EIAAADGEFVEQVIRPTGLVDPKVTVKPTKGQIDDLIHEIRQRTDKDERVLVTTLTKKMA 481

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL E  IRVRY+HS++ TL+R+E++R LRLG++DVLVGINLLREGLD+PE  LVA
Sbjct: 482 EDLTDYLLENGIRVRYLHSDIDTLQRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVA 541

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS TSLIQTIGRAARNV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +N
Sbjct: 542 ILDADKEGFLRSTTSLIQTIGRAARNVSGEVIMYADKITDSMQYAIEETDRRREKQVAYN 601

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAA--------TTNISIDAQQLSLSKKKGKAHLKSL 767
           K+H I+PQ +++KI +++D +    A            +       S+  K+ +  +  L
Sbjct: 602 KEHGIDPQPLRKKIADILDQVYDNSADGAGPSASGDAAVVAKPDVSSMPAKEVQKLIDDL 661

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             QM  AA  L FE A R+RDEI  LK     +G+ D+
Sbjct: 662 SAQMAAAARELKFELAGRLRDEIFELKKE--LRGIKDA 697


>gi|269216206|ref|ZP_06160060.1| excinuclease ABC subunit B [Slackia exigua ATCC 700122]
 gi|269130465|gb|EEZ61543.1| excinuclease ABC subunit B [Slackia exigua ATCC 700122]
          Length = 719

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/667 (55%), Positives = 487/667 (73%), Gaps = 6/667 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ + Y PSGDQP AIA L +G+    + Q LLGVTGSGKTFTMAK IEA+Q+P +VM
Sbjct: 26  PFKVVSPYEPSGDQPQAIASLAEGVERGLRYQTLLGVTGSGKTFTMAKTIEAVQKPTLVM 85

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQL +E K FFPHNAV YFVSYYDYYQPEAYVP+TDT+IEK++SINE+++++R
Sbjct: 86  APNKTLAAQLAAELKEFFPHNAVVYFVSYYDYYQPEAYVPQTDTFIEKDASINEEVEKLR 145

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT SLL R D IVV+SVSCIYGIGS   Y+ M V +      E+ +++  L+  QY R
Sbjct: 146 HAATSSLLSRRDVIVVASVSCIYGIGSPMDYAGMAVFVDRQKPAERDDVIHQLIDIQYDR 205

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D  + RGTFRV GD++++FP + ++   R+  +G++IE I E   LTG+ + + E I I
Sbjct: 206 NDYELSRGTFRVRGDALDVFPPYADN-PLRIEFWGDEIESIQEIDNLTGEVLMSFEAIPI 264

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SHYVT RP +  A+  I+EEL+ RL +L  EG+LLEAQRLE R  YDLEMLET G C
Sbjct: 265 WPASHYVTARPKMRKAIGTIQEELRGRLEQLRAEGKLLEAQRLEMRTNYDLEMLETMGFC 324

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L GR+PGEPP TL +Y P+D L  +DESHVT+PQI GM+ GD  RK TLAE
Sbjct: 325 SGIENYSRHLDGRSPGEPPYTLIDYFPDDFLCIIDESHVTVPQIRGMHEGDRSRKVTLAE 384

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPSC+DNRPLRF+E+    P  I VSATPG +E    +   VEQIIRPTGL+DP +
Sbjct: 385 HGFRLPSCLDNRPLRFDEFEERVPQFIYVSATPGDYENRVSERR-VEQIIRPTGLLDPEI 443

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   +Q++D+ DE    +    R+L+T LTK+MAEDLT++L ++ IR RYMHS++ TL
Sbjct: 444 EVRPIASQIDDIIDEARARSDAHERVLITTLTKKMAEDLTDHLLDQGIRSRYMHSDIGTL 503

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+RDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR+  SLIQTIGRAA
Sbjct: 504 ERVEILRDLRTGEFDVLVGINLLREGLDLPEVTLVAILDADKEGFLRNHRSLIQTIGRAA 563

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+ KVI+YAD IT S+ LAI ET RRR  Q+ +N++H I P+++++ I +V+  I   
Sbjct: 564 RNVSGKVIMYADKITDSMDLAITETRRRRAIQMAYNEEHGIEPKTIRKAINDVMGFITDG 623

Query: 740 DAATTNISIDAQQ--LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           D      + D  +    LS+ +    +  + ++M  A+++++FEEAAR+RD++ +L++  
Sbjct: 624 DNNEVGTAEDVNKVLAELSRGEVMRIIAGMEEEMASASESMDFEEAARLRDQVVKLRAQ- 682

Query: 798 YFQGLDD 804
             +G D+
Sbjct: 683 -MEGTDE 688


>gi|297195034|ref|ZP_06912432.1| excinuclease ABC subunit B [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297152598|gb|EFH31870.1| excinuclease ABC subunit B [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 704

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/696 (50%), Positives = 484/696 (69%), Gaps = 29/696 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++   + +  F++ + + PSGDQP AIA+L + I + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVSKIERTVAPFEVVSHFQPSGDQPTAIAELERRIRAGEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +VQLK+GD +++ +L
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVQLKVGDEIDRDQL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG
Sbjct: 182 LRRFVDIQYTRNDLAFQRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + +   +++ ++  SHYV     +  A+  I+ EL+ RL EL+K+G+LLE+QRL  R TY
Sbjct: 241 EILSEDQSLYVFPASHYVAGPERMEKAVNGIEAELEQRLAELDKQGKLLESQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   GSC  IENYS +   R PG PP TL +Y PED LL +DESHVT+PQI  MY 
Sbjct: 301 DIEMMRQIGSCSGIENYSMHFDDREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG++EL +  G  VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLKWEEFKERIGQTVYLSATPGTYELSRGDG-FVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGL+DP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+
Sbjct: 420 IRPTGLIDPQVVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMAEDLTDYFLELGIQ 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSDVDTLRRVELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD IT +++ AI+ET RRREKQ+ +N ++ I+PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADKITPAMEKAIEETNRRREKQIAYNTENGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKK---------------------------KGK 761
           I +++  I  E+  T  +     + + ++K                           +  
Sbjct: 600 INDIVATIAREEIDTEELLGTGYRQAKAEKPGKGAKAPVPSLGAGRKGEILSDRPAAELA 659

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             ++ +  +M  AA  L FE AAR+RDE+  LK   
Sbjct: 660 GIIEEMTDRMRAAAAELQFEVAARLRDEVGELKKEL 695


>gi|317497023|ref|ZP_07955351.1| excinuclease ABC [Lachnospiraceae bacterium 5_1_63FAA]
 gi|291558945|emb|CBL37745.1| excinuclease ABC, B subunit [butyrate-producing bacterium SSC/2]
 gi|316895683|gb|EFV17837.1| excinuclease ABC [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 662

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/657 (54%), Positives = 477/657 (72%), Gaps = 3/657 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI +L KG     + + LLGVTGSGKTFTMA +I+ + +P +
Sbjct: 1   MDHFELVSEYEPTGDQPQAIEKLTKGFQDGNQFETLLGVTGSGKTFTMANIIQNLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+SS+N++ID+
Sbjct: 61  ILAHNKTLAAQLYSEFKAFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSVNDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L+ER D IVVSSVSCIYGIGS ESYS+M++ L+ G   ++ E++  L+  QY
Sbjct: 121 LRHSATAALIERKDVIVVSSVSCIYGIGSKESYSEMMISLRPGMIKDRDEVIDDLINIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RGTFRV GD +EI P    + A RV  FG++I+ I EF  LTG+  R++  +
Sbjct: 181 VRSELDFKRGTFRVKGDVLEILPVSTFEDAVRVEFFGDEIDRIVEFDVLTGEVKRSLNFV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV P+  +  A+K IKEEL  ++   ++  +L+EAQR+ +R  +D+EML  TG
Sbjct: 241 AIFPASHYVVPQEQIERAIKGIKEELAEQVTYFKEHDQLIEAQRIAERTNFDIEMLRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L G  PG+PP TL ++  +D L+ +DESH+T+PQI GMY GD  RK+TL
Sbjct: 301 FCSGIENYSRHLAGLEPGQPPSTLIDFFGDDFLMIIDESHITVPQIGGMYAGDQSRKSTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL F E+       + VSATPG +E E  + +  EQIIRPTGL+DP
Sbjct: 361 VDFGFRLPSAKDNRPLEFGEFEQKIDQMLFVSATPGKYEEEH-ELLRAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R    Q++D+  EI+    +G ++L+T LTKRMAE+LT+Y+ E  IRV+Y+HS++ 
Sbjct: 420 AIDVRPVEGQIDDLLGEIHKETDKGNKVLVTTLTKRMAEELTDYMREVGIRVKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI+RDLR+G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSL+QTIGR
Sbjct: 480 TLERIEIVRDLRMGVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLVQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD +T S+  AI ET RRRE Q E+NK+H I PQ++K+ I ++I    
Sbjct: 540 AARNSEGHVIMYADHMTDSMHAAITETERRREIQDEYNKEHGITPQTIKKDIRDLIKISD 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             +  T     D +  S+SKK+ K  ++ L K+M+ AA  LNFE AA++RDE+K  K
Sbjct: 600 EHEEETGGYEKDME--SMSKKELKEVIERLSKKMNQAAAELNFELAAQLRDELKEFK 654


>gi|29832815|ref|NP_827449.1| excinuclease ABC subunit B [Streptomyces avermitilis MA-4680]
 gi|81838137|sp|Q829Y6|UVRB_STRAW RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|29609936|dbj|BAC73984.1| putative excinuclease ABC subunit B [Streptomyces avermitilis
           MA-4680]
          Length = 713

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/705 (51%), Positives = 481/705 (68%), Gaps = 38/705 (5%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++   + +  F++ + Y PSGDQPAAIA+L + I + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVSKIERTVAPFEVVSPYQPSGDQPAAIAELDRRIRAGEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V L++GD V++ +L
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLRVGDEVDRDDL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG
Sbjct: 182 LRRFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I + + + ++  SHYV     L  A   I++EL  RL ELEK+G+LLEAQRL  R TY
Sbjct: 241 EIISDDQHLYVFPASHYVAGPERLERAANDIEKELGERLTELEKQGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML   GSC  +ENYS +  GR PG PP TL +Y P+D LL +DESHVT+PQI  MY 
Sbjct: 301 DLEMLRQIGSCSGVENYSMHFDGREPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL++EE+       + +SATPG +EL +  G  VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQAVYLSATPGKYELSRGDG-FVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGL+DP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+
Sbjct: 420 IRPTGLIDPEVVVKPTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMAEDLTDYFLELGIQ 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +NK+  I+PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQVAYNKEKGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKK------------------------------ 758
           I +++  I  ED  T  +     + +   K                              
Sbjct: 600 INDIVAQIAREDIDTEQLLGSGYRQAKDGKGAKAPVPSLGGKAAAKGAKSAKGKAKETVP 659

Query: 759 ------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                 K    ++ L  +M  AA +L FE AAR+RDE+  +K   
Sbjct: 660 TDRPAAKLAEEIEELTNRMRAAAADLQFEIAARLRDEVSEMKKEL 704


>gi|227874334|ref|ZP_03992519.1| excision endonuclease subunit UvrB [Oribacterium sinus F0268]
 gi|227839822|gb|EEJ50267.1| excision endonuclease subunit UvrB [Oribacterium sinus F0268]
          Length = 667

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/669 (52%), Positives = 464/669 (69%), Gaps = 3/669 (0%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           + S+    F++ +DY P GDQPAAI +L+KG+    + + LLGVTGSGKTFTMA VI+ +
Sbjct: 2   DRSQLTGEFKLHSDYAPMGDQPAAIEKLVKGLQEGNQFETLLGVTGSGKTFTMANVIQQI 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           Q+P ++++ NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S IN
Sbjct: 62  QKPTLIISHNKTLAAQLYSEMKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSDIN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           E+ID++R+SA  +L ER D +VV+SVSCIYG+G+   Y  M + L+ G   ++ EL+ +L
Sbjct: 122 EEIDKLRNSAMAALSERKDVVVVASVSCIYGLGAPTEYLNMAISLRPGQIRDRDELIKNL 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V+ QY R D+   RGTFRV GD ++IFP+   + A+R+  FG++IEEI     LTG+   
Sbjct: 182 VEIQYNRNDMDFRRGTFRVKGDIVDIFPASEGEQAYRIQFFGDEIEEIQLIDALTGKGKA 241

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            +E   ++  + YV P   +  A K I EEL  R+   + E +LLEAQR+ +R  +D+EM
Sbjct: 242 KLEHCMVFPATPYVIPMEKMKIACKNILEELDERVAYFKSEEKLLEAQRISERTNFDVEM 301

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           +  TG C  IENY+R+L    PGEPP TL +Y PED L+ VDESH+++PQI GMY G+  
Sbjct: 302 IRETGVCSGIENYTRHLNFAQPGEPPYTLMDYFPEDYLIIVDESHISLPQIRGMYNGNLS 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL ++GFRLPS +DNRPL F E+       + VSATPG +E E  + +  EQIIRPT
Sbjct: 362 RKTTLVDFGFRLPSALDNRPLNFSEFEGKINQMLFVSATPGEYEAEH-EILRAEQIIRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP + +R  + Q++D+  EI+    +G +IL+T LTK+MAEDLT+YL E  +RV+Y+
Sbjct: 421 GLLDPEIVVRPTKGQIDDLLSEIHKETDKGNKILVTTLTKKMAEDLTKYLQEAKVRVKYL 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++ TLER  IIRD+RL KFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLI
Sbjct: 481 HSDIDTLERAAIIRDMRLDKFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLI 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           Q +GRAARN    VI+YADTIT S++  IDET RRR  Q E+NK H I P ++K+ + ++
Sbjct: 541 QIVGRAARNSEGHVIMYADTITDSMRRTIDETKRRRSIQEEYNKAHGITPTTIKKAVRDL 600

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           I    +          D +  S+SK + +  ++   K+M  AA  LNFE+AA  RD+I+ 
Sbjct: 601 IAISKVLRDDEKGFQKDVE--SMSKAEIEKMIREFSKKMRAAAAELNFEDAALYRDKIQE 658

Query: 793 LKSSPYFQG 801
           L+ S    G
Sbjct: 659 LRDSLEKNG 667


>gi|258645489|ref|ZP_05732958.1| excinuclease ABC subunit B [Dialister invisus DSM 15470]
 gi|260402842|gb|EEW96389.1| excinuclease ABC subunit B [Dialister invisus DSM 15470]
          Length = 702

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/661 (52%), Positives = 468/661 (70%), Gaps = 1/661 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
             +T F++   + P GDQP A+  L  G+      Q+LLG TG+GKTFTMAKVIE MQRP
Sbjct: 12  GKMTPFRLAAPFQPMGDQPEAVKSLTDGLRDGHWAQVLLGATGTGKTFTMAKVIEEMQRP 71

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            ++++PNK LAAQ  SEFK+FFP NAV YFVSYYDY+QPE+Y+P+TDTYIEK+SS NE+I
Sbjct: 72  TLIISPNKTLAAQTASEFKDFFPDNAVYYFVSYYDYFQPESYIPQTDTYIEKDSSRNEEI 131

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           DR+RHSAT +L ER D I+V+SVSCIYG+G  E YS + + L+ G+ + + ++L  LV  
Sbjct: 132 DRLRHSATMALFERRDVIIVASVSCIYGLGDPEDYSTLGLSLRPGEEITRDQILLRLVDM 191

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D+   R TFRV GD+I++FP+   + A R+ MFG++IE + EF  LTG  +   +
Sbjct: 192 QYLRNDLNFTRDTFRVRGDTIDVFPASSNNTAVRIEMFGDEIESLYEFDVLTGATVAERD 251

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I I+  SHYVT    L  A+  IK EL+ RL EL ++ R+LEAQRL QR  YDLEM++ 
Sbjct: 252 HIGIFPASHYVTTSGKLKNAIAKIKVELEERLKELREQDRILEAQRLMQRTNYDLEMMQE 311

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR+++ R PG+PP TL +Y P+D ++ +DESH+T+PQ+  MY GD  RK 
Sbjct: 312 VGYCSGIENYSRHMSDRRPGDPPYTLLDYFPDDYMIMIDESHITVPQLHAMYNGDQSRKH 371

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL +YGFRLPS +DNRPL FEE+       I VSATPG +E+   Q  + EQIIRPTGL+
Sbjct: 372 TLVDYGFRLPSALDNRPLTFEEFTDRINQIIYVSATPGRYEMS-VQTNMAEQIIRPTGLL 430

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R    Q++D+  EI+       R+L+T LTK+MAEDLT++L E  ++VRY+HS+
Sbjct: 431 DPSVEVRPIEGQMDDLLGEIHKREAVNERVLITTLTKKMAEDLTDFLNEAGVKVRYLHSD 490

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           V T+ER EIIRDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR++TS+IQ I
Sbjct: 491 VATIERAEIIRDLRAGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRNETSMIQVI 550

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN +  VI+YAD +TKS++ AI+ET RRR+ Q  +N KH+I P+++++K+ ++I+ 
Sbjct: 551 GRAARNAHGHVIMYADRMTKSMKYAIEETNRRRKIQEAYNTKHHIVPKTIRKKVKDLIEL 610

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             + ++  T  S D    +LS ++    +K+  + M  AA  + FEEAA  RD +  L+ 
Sbjct: 611 TKISESTETYGSGDQSVENLSDEELYNRMKNSERNMKRAAKAMEFEEAALWRDRLAGLRQ 670

Query: 796 S 796
            
Sbjct: 671 Q 671


>gi|256788422|ref|ZP_05526853.1| excinuclease ABC subunit B [Streptomyces lividans TK24]
 gi|289772313|ref|ZP_06531691.1| excinuclease ABC, B subunit [Streptomyces lividans TK24]
 gi|289702512|gb|EFD69941.1| excinuclease ABC, B subunit [Streptomyces lividans TK24]
          Length = 712

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/704 (50%), Positives = 481/704 (68%), Gaps = 37/704 (5%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++   + +  F++ + Y PSGDQP AIA+L + + + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVSQIERTVAPFEVVSPYQPSGDQPTAIAELARRVQAGEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +V L++G+  ++ EL
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVPLRVGEEHDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +P+TG
Sbjct: 182 LRRFVDIQYTRNDMAFARGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPVTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I + + + ++  SHYV     L  A+  I++EL  RL ELEK+G+LLEAQRL  R TY
Sbjct: 241 EIISDDQQLYVFPASHYVAGPERLERAVNDIEKELAERLTELEKQGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EML   GSC  +ENYS +  GR+PG PP TL +Y P+D LL +DESHVT+PQI  MY 
Sbjct: 301 DIEMLRQIGSCSGVENYSMHFDGRSPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG++EL +  G  VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYLSATPGAYELSRSDG-AVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+
Sbjct: 420 IRPTGLVDPEVVVKPTEGQIDDLVHEIRRRTEKDERVLVTTLTKKMAEDLTDYFVELGIQ 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+  NK + ++PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQVAFNKANGVDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI-----------------------------------SIDAQQL 753
           I +++  I  ED  T  +                                   + +    
Sbjct: 600 INDIVAQIAREDVDTEQLLGSGYRQTKEGKGAKAPVPALGGQKTGGAKAARGRAKETAVT 659

Query: 754 SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                +    ++ L  +M  AA +L FE AAR+RDE+  +K   
Sbjct: 660 DRPAAELAEQIEDLTTRMRAAAADLQFEIAARLRDEVSEMKKEL 703


>gi|326331625|ref|ZP_08197913.1| excinuclease ABC subunit B [Nocardioidaceae bacterium Broad-1]
 gi|325950424|gb|EGD42476.1| excinuclease ABC subunit B [Nocardioidaceae bacterium Broad-1]
          Length = 708

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/700 (49%), Positives = 467/700 (66%), Gaps = 32/700 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + +  + +  F++ +DY PSGDQPAAIA++ K I    K  +LLG TG+GKT T+A  
Sbjct: 2   RPVTDLERRVAPFKVVSDYQPSGDQPAAIAEITKRIQDGVKDVVLLGATGTGKTATVAWT 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
            E +QRP +V+ PNK LAAQ  +E +  FP NAVEYFVSYYDYYQPEAYVP+TDTYIEK+
Sbjct: 62  AEQLQRPMLVLQPNKTLAAQFANELRQLFPDNAVEYFVSYYDYYQPEAYVPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D IVVS+VSCIYG+G+ + Y   +++L++G+  ++  +
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVIVVSTVSCIYGLGTPQEYVDRMIRLRVGEEHDRDSI 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV+ QY R D+   RGTFRV GD++EIFP + E+ A R+  FG++IE +   + +TG
Sbjct: 182 LRRLVEIQYTRNDLSFTRGTFRVRGDTLEIFPVY-EEHAVRIEFFGDEIERLMTLHAVTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + +   + + ++  +HYV     +  A+  I+ EL  +L   EK+G++LEAQRL  R TY
Sbjct: 241 EVLTEDQELYVFPATHYVAGPERMERAINGIEAELDQQLSTFEKQGKMLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   GSC  IENYS ++ GR  G  P  L +Y PED +L VDESHV +PQ+ GMY 
Sbjct: 301 DIEMMRQVGSCSGIENYSMHIDGRERGSAPNCLLDYFPEDFVLVVDESHVAVPQVGGMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L E+GFRLPS  DNRPL++EE+      TI +SATPG +EL++  G  VEQI
Sbjct: 361 GDMSRKRNLVEHGFRLPSAQDNRPLKWEEFLERIGQTIYLSATPGDYELDKVGGDTVEQI 420

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGL+DP V I+  + Q++D+  EIN    +  R+L+T LTK+M+EDLT+YL +  IR
Sbjct: 421 IRPTGLIDPEVIIKPTKGQIDDLIGEINDRVAKNERVLVTTLTKKMSEDLTDYLLDAGIR 480

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            RY+HSEV TL+RIE++RDLRLG++DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS 
Sbjct: 481 TRYLHSEVDTLKRIELLRDLRLGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSD 540

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +V +YAD IT S++ AI+ET RRR  Q+ +N+ + I+PQ +++K
Sbjct: 541 KSLIQTIGRAARNVSGQVHMYADKITPSMESAIEETNRRRAIQMAYNEANGIDPQPLRKK 600

Query: 729 IMEVIDPILLEDAATTNI-------------------------------SIDAQQLSLSK 757
           I ++ D +  ED +T  +                               + +   + L  
Sbjct: 601 IADITDMLAREDESTQELLNTWAGTEAKGRAGKTSAKAPTPMLGDAAREARERGLVGLPS 660

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                 +  L  QM  AA  L FE AAR+RDEI  LK   
Sbjct: 661 SDLAQLIGDLTDQMKGAAAELQFEVAARLRDEISELKKEL 700


>gi|163790858|ref|ZP_02185283.1| excinuclease ABC subunit B [Carnobacterium sp. AT7]
 gi|159873926|gb|EDP68005.1| excinuclease ABC subunit B [Carnobacterium sp. AT7]
          Length = 664

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/660 (52%), Positives = 465/660 (70%), Gaps = 1/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQPAAI +L+ GI S  K Q LLG TG+GKTFT++ VI+ + +P +V+A
Sbjct: 6   FELVSKYQPSGDQPAAIKKLIAGIESGTKEQTLLGATGTGKTFTVSNVIKEVNKPTLVIA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEKESS+N++ID++RH
Sbjct: 66  HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKESSVNDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLER D IVV+SVSCIYG+ + E Y   ++ L++G  + + E+L  LV  Q++R 
Sbjct: 126 SATSALLERRDVIVVASVSCIYGLVNPEDYRDHVLSLRVGAEMNRDEMLRRLVDMQFERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIF +  +  A RV  FG++I+ I E   LTG+   +V+ + I+
Sbjct: 186 DIDFQRGRFRVRGDVVEIFLASRDSEAIRVEFFGDEIDRIREVDVLTGEVKADVQHVPIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+V       +A+K I+EEL+ RL EL  E +L+EAQRLEQR  YDLEML   G C 
Sbjct: 246 PATHFVANDEQTRSAIKNIQEELEERLKELRAEDKLIEAQRLEQRTNYDLEMLLEMGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L +Y
Sbjct: 306 GIENYSRHMDGRKPGEAPYTLIDFFPDDFLIVIDESHITMSQIRGMYNGDRARKQQLIDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLR EE+       + +SATPG +ELE+   +I EQIIRPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLRLEEFENHVNQIMYISATPGPYELERAPEVI-EQIIRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN  +++  R+ +T LTK+M+EDLT+YL E  I+V Y+HSE+KTLE
Sbjct: 425 VRPIKGQIDDLIGEINERSEKNERVFITTLTKKMSEDLTDYLKEVGIKVAYLHSEIKTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG +DVL+GINLLREG+D+PE  LV ILDADKEGFLRS+ SL+QTIGRAAR
Sbjct: 485 RTEIIRDLRLGVYDVLIGINLLREGIDVPEVSLVIILDADKEGFLRSERSLVQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD IT S++ AI ET RRRE Q E+N+KH I P+++ + I ++I    +  
Sbjct: 545 NENGRVIMYADRITDSMRAAISETGRRRETQEEYNEKHGITPKTIIKDIRDLISITSVVK 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
                 S       +++ +    +  L  +M +AA  LNFE+AA +RD +  + +    +
Sbjct: 605 GDDEGASGLENIAKMTRAQRLELIDGLELEMKVAAKELNFEKAANLRDMVLEITAQYKLK 664


>gi|119944840|ref|YP_942520.1| excinuclease ABC subunit B [Psychromonas ingrahamii 37]
 gi|189037988|sp|A1STV6|UVRB_PSYIN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|119863444|gb|ABM02921.1| Excinuclease ABC subunit B [Psychromonas ingrahamii 37]
          Length = 670

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/668 (52%), Positives = 466/668 (69%), Gaps = 5/668 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             FQ+ + + P+GDQP AI QL+ G+ S    Q LLGVTGSGKTFT+A  I  + RP ++
Sbjct: 3   KRFQLVSQFSPAGDQPQAIEQLINGLKSGLAFQTLLGVTGSGKTFTLANAIAKLNRPTLI 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +D++IEK+++IN  I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSSDSFIEKDAAINAHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D ++V+SVS IYG+G   +Y QM++ L +G+ +  +E+L  LV  QY 
Sbjct: 123 RLSATKALLERKDVVLVASVSAIYGLGDPTAYLQMMLHLTVGEIISSREILQRLVDLQYN 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +  + RGTFRV G+ I+IFP+  E  A R+ +F +++E+IS F PLTGQ I  +  + 
Sbjct: 183 RNETELSRGTFRVRGEVIDIFPADSEKEALRIELFDDEVEQISVFDPLTGQGIDKLARVT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  +HYVTPR  +  A+  IK EL  R  E  ++ +LLE QR+ QR  YD+EM+   G 
Sbjct: 243 VYPKTHYVTPREQILKAVDAIKVELNERKKEFLEQNKLLEEQRISQRTLYDIEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR+ G+ PPTLF+Y+P+D+LL +DESHVT+PQI  MY+GD  RK  L 
Sbjct: 303 CSGIENYSRYLSGRSEGQAPPTLFDYLPKDALLIIDESHVTVPQIGAMYKGDRSRKENLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            YGFRLPS +DNRPL+F E+  + P TI VSATP  +E+ + QG I+ Q+IRPTGL+DP 
Sbjct: 363 NYGFRLPSALDNRPLKFAEFEKIAPQTIYVSATPSDYEINKSQGEIIRQVIRPTGLLDPV 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EIN+      R+L+T LTKRMAEDLT+YL+E  I+ RY+HS+V T
Sbjct: 423 IEVRPVTTQVDDLLSEINIRLPLKERVLVTTLTKRMAEDLTDYLHEHGIKARYLHSDVNT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRA
Sbjct: 483 VERVEIIRDLRLGIFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----D 734
           ARN+N K ILYA  IT S+Q AI  T  RRE Q + N ++ I PQ + +++ +V+     
Sbjct: 543 ARNLNGKAILYAARITGSMQKAIKVTEDRRELQNKFNIENGIIPQGLSKQVNDVMQLGQK 602

Query: 735 PILLEDAATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
            +   +     ++   A     S++     +    KQM   A NL FE+AA  RDE+ +L
Sbjct: 603 NLKKGNLKQGKVAEYKANYQIHSEQDILKQIALSEKQMFACAKNLEFEKAALFRDEVTKL 662

Query: 794 KSSPYFQG 801
                  G
Sbjct: 663 HEQLVSIG 670


>gi|167748523|ref|ZP_02420650.1| hypothetical protein ANACAC_03267 [Anaerostipes caccae DSM 14662]
 gi|167652515|gb|EDR96644.1| hypothetical protein ANACAC_03267 [Anaerostipes caccae DSM 14662]
          Length = 681

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/657 (53%), Positives = 480/657 (73%), Gaps = 4/657 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +++ P+GDQP AI QL+ G     + + LLGVTGSGKTFTMA VI+ + +P +
Sbjct: 21  MDHFELVSEFEPTGDQPEAIRQLVSGFKQGNQFETLLGVTGSGKTFTMANVIQELNKPTL 80

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+SS+N++ID+
Sbjct: 81  IIAHNKTLAAQLYSEFKAFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSVNDEIDK 140

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L+ER D IVVSSVSCIYGIGS E+YS+M++ L+ G   ++ +++  L+  QY
Sbjct: 141 LRHSATAALIERKDVIVVSSVSCIYGIGSKENYSEMMISLRPGMEKDRDQVIDELINIQY 200

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RGTFRV GD +EI P    + A RV  FG++I+ I EF  LTG+  R++  +
Sbjct: 201 VRNELDFKRGTFRVKGDVLEILPVSTFEEAVRVEFFGDEIDRIVEFDVLTGEVKRSINFL 260

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV P+  +  A+  IK+EL  R+   ++  +L+EAQR+ +R  +D+EML  TG
Sbjct: 261 AIFPASHYVVPQEQIEQAIVNIKQELAERVKYFQENDQLIEAQRIAERTNFDIEMLRETG 320

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTG  PGEPP TL ++  +D L+ VDESH+T+PQI GMY GD  RK+TL
Sbjct: 321 FCSGIENYSRHLTGGKPGEPPSTLIDFFGDDFLVIVDESHITVPQIGGMYSGDQSRKSTL 380

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL F E+       + VSATP  +E E  + +  EQIIRPTGL+DP
Sbjct: 381 VDFGFRLPSAKDNRPLEFSEFESKIDQMMFVSATPSKYEAEH-ELLRAEQIIRPTGLLDP 439

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+++R  + Q++D+  E++   +QG ++L+T LTKRMAE+LT+Y+ E  IRV+Y+HS++ 
Sbjct: 440 PIDVRPVKGQIDDLLSEVHKETEQGHKVLVTTLTKRMAEELTDYMREVGIRVKYLHSDID 499

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EI+RDLR+  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSL+QT+GR
Sbjct: 500 TLERTEIVRDLRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLVQTVGR 559

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD +T S++ AI ET RRR  Q ++NK+H I PQ++++ I ++I    
Sbjct: 560 AARNSEGHVIMYADNMTDSMEAAISETNRRRAIQDQYNKEHGITPQTIQKDIRDLIKISD 619

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            E+A  +N   +    S++KK+ K +++ L K+M+ AA  LNFEEAA +RDE+K  K
Sbjct: 620 EEEAEQSN---EKDIESMNKKELKENIERLTKKMNRAAAELNFEEAAALRDELKEYK 673


>gi|32141151|ref|NP_733553.1| excinuclease ABC subunit B [Streptomyces coelicolor A3(2)]
 gi|81842342|sp|Q8CK11|UVRB_STRCO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|24419016|emb|CAD55287.1| ABC excision nuclease subunit B [Streptomyces coelicolor A3(2)]
          Length = 712

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/704 (50%), Positives = 480/704 (68%), Gaps = 37/704 (5%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++   + +  F++ + Y PSGDQP AIA+L + + + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVSQIERTVAPFEVVSPYQPSGDQPTAIAELARRVQAGEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +V L++G+  ++ EL
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVPLRVGEEHDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +P+TG
Sbjct: 182 LRRFVDIQYTRNDMAFARGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPVTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I   + + ++  SHYV     L  A+  I++EL  RL ELEK+G+LLEAQRL  R TY
Sbjct: 241 EIISEDQQLYVFPASHYVAGPERLERAVNDIEKELAERLTELEKQGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EML   GSC  +ENYS +  GR+PG PP TL +Y P+D LL +DESHVT+PQI  MY 
Sbjct: 301 DIEMLRQIGSCSGVENYSMHFDGRSPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG++EL +  G  VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYLSATPGAYELSRSDG-AVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+
Sbjct: 420 IRPTGLVDPEVVVKPTEGQIDDLVHEIRRRTEKDERVLVTTLTKKMAEDLTDYFVELGIQ 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+  NK + ++PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQVAFNKANGVDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI-----------------------------------SIDAQQL 753
           I +++  I  ED  T  +                                   + +    
Sbjct: 600 INDIVAQIAREDVDTEQLLGSGYRQTKEGKGAKAPVPALGGQKTGGAKAARGRAKETAVT 659

Query: 754 SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                +    ++ L  +M  AA +L FE AAR+RDE+  +K   
Sbjct: 660 DRPAAELAEQIEDLTTRMRAAAADLQFEIAARLRDEVSEMKKEL 703


>gi|312897551|ref|ZP_07756971.1| excinuclease ABC subunit B [Megasphaera micronuciformis F0359]
 gi|310621403|gb|EFQ04943.1| excinuclease ABC subunit B [Megasphaera micronuciformis F0359]
          Length = 720

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/679 (52%), Positives = 478/679 (70%), Gaps = 7/679 (1%)

Query: 130 SINNHSKD---ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
           ++   +KD      F++++ + P+GDQPAAI  L  GI S +  Q+LLG TG+GKT+TMA
Sbjct: 2   NVEERNKDYDRSRPFRVESPFEPTGDQPAAIDSLAHGIESGQWAQVLLGATGTGKTYTMA 61

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
           K+IE +Q+P +++A NK LAAQL SEFK FFP N V YFVSYYDYYQPEAY+P TDTYIE
Sbjct: 62  KLIERVQKPTLIIAHNKTLAAQLCSEFKAFFPDNEVGYFVSYYDYYQPEAYIPTTDTYIE 121

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+S+IN++ID++RHSAT SL ER D I+V+SVSCIYG+G  E YS +++ L++G    Q 
Sbjct: 122 KDSAINDEIDKLRHSATMSLFERRDVIIVASVSCIYGLGDPEDYSDLVLSLRLGQEKSQT 181

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           E+L  LV  QY R D+ + RGTFRV GD+IE+FP+  +    R+ MFG++I+ ++E   L
Sbjct: 182 EILRKLVDIQYTRNDLDLQRGTFRVHGDTIEVFPAAFDSSVIRIEMFGDEIDRMTEVDVL 241

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG+ +   + I +Y  SHYVT +  +  A+  I EELK RL  L+   RLLEAQRLEQR 
Sbjct: 242 TGEVLAERKHIAVYPASHYVTTKEKMQRALGTISEELKERLQYLKSRERLLEAQRLEQRT 301

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
            YD+EM+E  G C  IENYSR+L+GR  GE P TL +Y P+D ++ +DESHVTIPQ+  M
Sbjct: 302 RYDMEMMEEMGYCSGIENYSRHLSGRKAGEAPYTLLDYFPDDFMILIDESHVTIPQLRAM 361

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           Y GD  RK +L EYGFRLPS  DNRPL F+E+       + VSATPG +E+E  Q  + +
Sbjct: 362 YAGDQSRKESLVEYGFRLPSAKDNRPLNFDEFTERINQIVYVSATPGDYEME-VQTNLAQ 420

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           QIIRPTGL+DP VE+R    Q++D+  EI    ++  R+L+T LTK+MAEDLTE+L E  
Sbjct: 421 QIIRPTGLLDPKVEVRPVTGQMDDLLGEIRKRIEKKERVLVTTLTKKMAEDLTEFLKETG 480

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           I VRY+HS++ T+ER EIIRDLR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLR
Sbjct: 481 ILVRYLHSDIATIERAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 540

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S T+LIQT+GRAARN +  VI+YADT+T S+Q A+DET RRR  Q  +NK+H+I P+SVK
Sbjct: 541 SDTALIQTMGRAARNEHGTVIMYADTVTGSMQRAMDETERRRAVQEAYNKEHHITPKSVK 600

Query: 727 EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           ++++ +I+   + +      + D     L+K+     + SL ++M  A+  L FE+AA I
Sbjct: 601 KEVVNLIELTKVSEEEKGYGAAD---ELLTKEALHKVIHSLTQEMKKASRQLEFEKAAEI 657

Query: 787 RDEIKRLKSSPYFQGLDDS 805
           RD + RL+        DD+
Sbjct: 658 RDRLGRLRQELSQMSHDDT 676


>gi|15827723|ref|NP_301986.1| excinuclease ABC subunit B [Mycobacterium leprae TN]
 gi|221230200|ref|YP_002503616.1| excinuclease ABC subunit B [Mycobacterium leprae Br4923]
 gi|13431967|sp|P57991|UVRB_MYCLE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|13093274|emb|CAC31768.1| excinuclease ABC subunit B [Mycobacterium leprae]
 gi|219933307|emb|CAR71482.1| excinuclease ABC subunit B [Mycobacterium leprae Br4923]
          Length = 698

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/692 (52%), Positives = 472/692 (68%), Gaps = 30/692 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I + E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 7   FEVISPHEPAGDQPAAIDELQRRILAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 67  PNKTLAAQLANELRGMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ +SY    V+L + + V +  LL  LV  QY R 
Sbjct: 127 SATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVELAVSNEVPRDGLLRLLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 187 DLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL E E++G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 246 PATHYVAGPERMAQAISAIEEELAERLAEFERQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDMSRKRNLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQSGGEFVEQVIRPTGLVDPKVV 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 426 VKPTKGQIDDLIGEIRKRANADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YADTIT S+  AIDET RRR KQ+ +N  + I+PQ +++KI +++D +  E 
Sbjct: 546 NVSGEVHMYADTITDSMTEAIDETERRRAKQIAYNNANGIDPQPLRKKIADILDQVYREA 605

Query: 741 AATTNISIDA---------------------------QQLSLSKKKGKAHLKSLRKQMHL 773
             T  + +                                 + + +    +K L  QM  
Sbjct: 606 DDTDTVQVGGSGRNVSRGRRAQSEPVRSVSVGVFEGRDTAGMPRAELADLIKDLTAQMMA 665

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           AA +L FE AAR RDEI  LK     +G+D +
Sbjct: 666 AASDLQFELAARFRDEIADLKKE--LRGMDAA 695


>gi|306820888|ref|ZP_07454508.1| excision endonuclease subunit UvrB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551002|gb|EFM38973.1| excision endonuclease subunit UvrB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 655

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/657 (51%), Positives = 467/657 (71%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  +   I+S  K Q LLGVTGSGKTFTMA +I+  ++P +V+ 
Sbjct: 3   FEIISPYQPTGDQPKAIKTMSDSINSGNKFQTLLGVTGSGKTFTMANIIKETKKPTLVIT 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAYV  +DTYIEK+S+IN++ID++R+
Sbjct: 63  HNKTLAAQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVAHSDTYIEKDSAINDEIDKLRY 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT ++LER D ++V+SVSCIYG+G    Y +M+V L+     ++ E++  LV  QY+R 
Sbjct: 123 SATAAILERRDVVIVASVSCIYGLGDPTDYLEMMVSLRPNQQKDRDEVIRELVDIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  +RGTFRV GD +EI P++ ++   RV  FG++IE I E   LTG+ I   E + I+
Sbjct: 183 DVNFVRGTFRVRGDILEILPANTDEKGIRVEFFGDEIERICEINYLTGEIIAQREHVSIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S YVT +  +  A++ I++ELK R+   E    L+EAQR+ QR  YD+EML   G+C+
Sbjct: 243 PASLYVTSKEKMEKAIQGIEKELKDRIQYFEDNNMLVEAQRIAQRTKYDIEMLREIGNCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +LTGR  GE P TL ++ P+D L+ +DESHV +PQ+  MY GD  RK +L +Y
Sbjct: 303 GIENYSLHLTGRKVGERPFTLIDFFPKDFLIIIDESHVMLPQLHAMYAGDHSRKKSLIDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+  +    + VSATP  +ELE       EQ+IRPTGL+DP +E
Sbjct: 363 GFRLPSAFDNRPLKFEEFESMINQIMFVSATPAKYELEHSSSFG-EQVIRPTGLLDPIIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EINL A++  R+L+T LTK+MAE LT YL    IRV+Y+HS+V TL+
Sbjct: 422 VRPVDGQIDDLIGEINLRAEKNERVLVTTLTKKMAEKLTTYLENVGIRVKYLHSDVDTLD 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI+IIRDLR+G+FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQT+GRAAR
Sbjct: 482 RIKIIRDLRIGEFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTVGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD+IT+S+++AI+ET RRR  Q  +N++H I P ++ +++ ++I      +
Sbjct: 542 NSNGKVIMYADSITRSMKVAIEETLRRRTIQERYNEEHGITPTTIYKEVRDLIVATKAAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             T     D    +L  ++ K  +  L ++M   A+NL FE+AA++RD I+ ++   
Sbjct: 602 ETTAYGVKD----TLEIEELKQRVIILTEEMLKCAENLEFEKAAKLRDTIREIEERI 654


>gi|167968414|ref|ZP_02550691.1| excinuclease ABC subunit B [Mycobacterium tuberculosis H37Ra]
 gi|215426951|ref|ZP_03424870.1| excinuclease ABC subunit B [Mycobacterium tuberculosis T92]
 gi|260200694|ref|ZP_05768185.1| excinuclease ABC subunit B [Mycobacterium tuberculosis T46]
 gi|294996582|ref|ZP_06802273.1| excinuclease ABC subunit B [Mycobacterium tuberculosis 210]
 gi|297634186|ref|ZP_06951966.1| excinuclease ABC subunit B [Mycobacterium tuberculosis KZN 4207]
 gi|297731173|ref|ZP_06960291.1| excinuclease ABC subunit B [Mycobacterium tuberculosis KZN R506]
 gi|306775819|ref|ZP_07414156.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu001]
 gi|306779631|ref|ZP_07417968.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu002]
 gi|306784363|ref|ZP_07422685.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu003]
 gi|306788731|ref|ZP_07427053.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu004]
 gi|306793068|ref|ZP_07431370.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu005]
 gi|306797450|ref|ZP_07435752.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu006]
 gi|306803328|ref|ZP_07439996.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu008]
 gi|306807910|ref|ZP_07444578.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu007]
 gi|306967727|ref|ZP_07480388.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu009]
 gi|306971925|ref|ZP_07484586.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu010]
 gi|307079641|ref|ZP_07488811.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu011]
 gi|307084213|ref|ZP_07493326.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu012]
 gi|313658505|ref|ZP_07815385.1| excinuclease ABC subunit B [Mycobacterium tuberculosis KZN V2475]
 gi|308215734|gb|EFO75133.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu001]
 gi|308327432|gb|EFP16283.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu002]
 gi|308330911|gb|EFP19762.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu003]
 gi|308334746|gb|EFP23597.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu004]
 gi|308338523|gb|EFP27374.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu005]
 gi|308342194|gb|EFP31045.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu006]
 gi|308345720|gb|EFP34571.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu007]
 gi|308350019|gb|EFP38870.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu008]
 gi|308354656|gb|EFP43507.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu009]
 gi|308358612|gb|EFP47463.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu010]
 gi|308362538|gb|EFP51389.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu011]
 gi|308366158|gb|EFP55009.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           SUMu012]
 gi|323719893|gb|EGB29006.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis
           CDC1551A]
          Length = 719

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/704 (51%), Positives = 480/704 (68%), Gaps = 30/704 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
            ++    +    F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +
Sbjct: 16  RAVEEIVRAGGHFEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWL 75

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+
Sbjct: 76  IERLQRPTLVMAPNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKD 135

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN+ ++R+RHSAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  L
Sbjct: 136 SSINDDVERLRHSATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGL 195

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG
Sbjct: 196 LRLLVDVQYTRNDMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTG 254

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + IR V++++I+  +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  Y
Sbjct: 255 EVIRQVDSLRIFPATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNY 314

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G C  IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY 
Sbjct: 315 DIEMMRQVGFCSGIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYE 374

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L EYGFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+
Sbjct: 375 GDISRKRNLVEYGFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQV 434

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 435 IRPTGLVDPKVVVKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIR 494

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSEV TL R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 495 VRYLHSEVDTLRRVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSS 554

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++K
Sbjct: 555 RSLIQTIGRAARNVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKK 614

Query: 729 IMEVIDPILLEDAATTNISIDA---------------------------QQLSLSKKKGK 761
           I +++D +  E   T  + +                                ++ + +  
Sbjct: 615 IADILDQVYREADDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELA 674

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             +K L  QM  AA +L FE AAR RDEI  LK     +G+D +
Sbjct: 675 DLIKDLTAQMMAAARDLQFELAARFRDEIADLKRE--LRGMDAA 716


>gi|148822840|ref|YP_001287594.1| excinuclease ABC subunit B [Mycobacterium tuberculosis F11]
 gi|148721367|gb|ABR05992.1| excinuclease ABC subunit B (helicase) uvrB [Mycobacterium
           tuberculosis F11]
          Length = 698

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/692 (52%), Positives = 477/692 (68%), Gaps = 30/692 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 7   FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 67  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKHNLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D +  E 
Sbjct: 546 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 605

Query: 741 AATTNISIDA---------------------------QQLSLSKKKGKAHLKSLRKQMHL 773
             T  + +                                ++ + +    +K L  QM  
Sbjct: 606 DDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMA 665

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           AA +L FE AAR RDEI  LK     +G+D +
Sbjct: 666 AARDLQFELAARFRDEIADLKRE--LRGMDAA 695


>gi|315093111|gb|EFT65087.1| excinuclease ABC subunit B [Propionibacterium acnes HL060PA1]
          Length = 701

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/694 (51%), Positives = 482/694 (69%), Gaps = 27/694 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + + ++ +  F + +++ PSGDQP AIA+L K ++S E+  +LLG TG+GKT T+A +
Sbjct: 2   RPVTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
            E +QRP +VM PNK LAAQ   E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+
Sbjct: 62  AEKLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+NE+++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y   ++ L++G   ++ EL
Sbjct: 122 SSLNEEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R DI   RGTFRV GD++EIFP + E+ A RV  FG++IE ++  +PLTG
Sbjct: 182 LRDLVTNQYIRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I   E + ++  +HYV     +  A+  I++EL+ RL  LE++G+LLEAQRL  R TY
Sbjct: 241 EVISEDEQVYVFPATHYVAGPERMERAVASIQQELEERLAVLERDGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM++  G+C  IENYSR++ GR PG  P  L +Y PED +L +DESHVT+PQI GMY 
Sbjct: 301 DIEMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS MDNRPL+F+E+      T+ +SATPGS+E E+  G +VEQI
Sbjct: 361 GDMSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERAHG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++    Q++D+  EI     +G R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 420 IRPTGLVDPEIIVKPTHGQIDDLMGEIRTRMDRGDRVLVTTLTKKMAEDLTDYLMEHGIR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            RY+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+
Sbjct: 480 TRYLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++K
Sbjct: 540 RSLIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI-------------------------SIDAQQLSLSKKKGKAH 763
           I ++ + +  E A T  +                                 ++++     
Sbjct: 600 IGDITEMLAREGADTDELFEKFNYGKGHRGYNSMITDEQRAAQGKRLDVSKMAEEDLGKL 659

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +  L  +M  AA  L FE AAR+RDEI  LK   
Sbjct: 660 IVDLTTEMRSAAGELKFEVAARLRDEIADLKKEL 693


>gi|269795319|ref|YP_003314774.1| excinuclease ABC subunit B [Sanguibacter keddieii DSM 10542]
 gi|269097504|gb|ACZ21940.1| Excinuclease ABC subunit B [Sanguibacter keddieii DSM 10542]
          Length = 699

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/692 (51%), Positives = 481/692 (69%), Gaps = 25/692 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + +  + +  F++ ++Y PSGDQP AIA+L + I   EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVTDLQRTVAPFEVISEYTPSGDQPTAIAELSQRIQGGEKDVVLLGATGTGKSATTAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAY+ +TDT+IEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLATEFRELLPNNAVEYFVSYYDYYQPEAYIAQTDTFIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN++++R+RHSAT +LL R D IVV+SVSCIYG+G+ + Y   +V+L +GD V++  L
Sbjct: 122 SSINDEVERLRHSATSNLLTRRDVIVVASVSCIYGLGTPQEYVDRMVRLDVGDQVDRDTL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD++EI P + E++A R+  FG++IE I   +PLTG
Sbjct: 182 LRKFVTMQYTRNDMAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIEAIQTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             +RN  +I ++  +HYV     +  A+  I+ EL+ RL  +E + +LLEAQRL  R TY
Sbjct: 241 DVVRNETSIHLFPATHYVAGPERMEKAIASIEAELEERLATMEAQNKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   GSC  IENYSR++ GR PG  P TL +Y PED LL +DESHVT+PQI  MY 
Sbjct: 301 DIEMMREIGSCSGIENYSRHIDGRGPGTAPHTLLDYFPEDFLLVIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L ++GFRLPS MDNRPLR+EE+      T+ +SATPG +EL    G  VEQI
Sbjct: 361 GDMSRKRNLVDHGFRLPSAMDNRPLRWEEFVDRIGQTVYLSATPGKYELSMSDG-FVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGL+DP V ++  + Q++D+ +EI + A++  R+L+T LTK+MAEDLT+Y  ++ +R
Sbjct: 420 IRPTGLIDPEVVVKPTKGQIDDLLEEIRVRAEKDERVLVTTLTKKMAEDLTDYFLDKGVR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSEV TL R+E++R+LR+G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSEVDTLRRVELLRELRMGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSA 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YADT+T S+ +A++ET RRREKQ+ +N +H I+P  +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADTVTPSMAMALEETDRRREKQVAYNLEHGIDPTPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI--------SIDAQQLSLSKKKGKA---------------HLK 765
           I +V D +  ED  T  +        +     L    K+G                  ++
Sbjct: 600 ISDVTDMLAREDIDTRELLEGGYRKPAKGGAPLPGGPKEGATSGNRLAVAAAGDLVGLIQ 659

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            L +QMH AA  L FE AAR+RDE+  LK   
Sbjct: 660 ELDEQMHAAAAELQFELAARLRDEVSGLKKEL 691


>gi|15608771|ref|NP_216149.1| excinuclease ABC subunit B [Mycobacterium tuberculosis H37Rv]
 gi|31792819|ref|NP_855312.1| excinuclease ABC subunit B [Mycobacterium bovis AF2122/97]
 gi|148661428|ref|YP_001282951.1| excinuclease ABC subunit B [Mycobacterium tuberculosis H37Ra]
 gi|289443086|ref|ZP_06432830.1| excinuclease ABC, B subunit [Mycobacterium tuberculosis T46]
 gi|54039842|sp|P67423|UVRB_MYCBO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|54042750|sp|P67422|UVRB_MYCTU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|2113917|emb|CAB08886.1| PROBABLE EXCINUCLEASE ABC (SUBUNIT B-HELICASE) UVRB [Mycobacterium
           tuberculosis H37Rv]
 gi|31618409|emb|CAD96327.1| Excinuclease ABC subunit B uvrB [Mycobacterium bovis AF2122/97]
 gi|148505580|gb|ABQ73389.1| excinuclease ABC subunit B [Mycobacterium tuberculosis H37Ra]
 gi|289416005|gb|EFD13245.1| excinuclease ABC, B subunit [Mycobacterium tuberculosis T46]
 gi|328459079|gb|AEB04502.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis KZN
           4207]
          Length = 698

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/692 (52%), Positives = 477/692 (68%), Gaps = 30/692 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 7   FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 67  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D +  E 
Sbjct: 546 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 605

Query: 741 AATTNISIDA---------------------------QQLSLSKKKGKAHLKSLRKQMHL 773
             T  + +                                ++ + +    +K L  QM  
Sbjct: 606 DDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMA 665

Query: 774 AADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           AA +L FE AAR RDEI  LK     +G+D +
Sbjct: 666 AARDLQFELAARFRDEIADLKRE--LRGMDAA 695


>gi|300933415|ref|ZP_07148671.1| excinuclease ABC subunit B [Corynebacterium resistens DSM 45100]
          Length = 707

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/695 (50%), Positives = 483/695 (69%), Gaps = 19/695 (2%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
               +    +    F++ ++Y P+GDQP AI +L + +   E+  +L+G TG+GK+ T A
Sbjct: 14  EFRPVGEVERSAGQFEVISEYQPAGDQPHAIEELAQRLDRGERDVVLMGATGTGKSATAA 73

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            +IE +QRP +VMAPNK LAAQL +E ++  P+NAVEYFVSYYDYYQPEAY+ +TDTYIE
Sbjct: 74  WLIEKVQRPTLVMAPNKTLAAQLANELRSLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIE 133

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+SSINE ++R+RHSAT +LL R D +VVSSVSCIYG+G+ +SY    V LK+G+ V++ 
Sbjct: 134 KDSSINEDVERLRHSATSNLLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLKVGEEVDRD 193

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           + L  LV  QY+R D+   RG FRV GD+++I P++ E++A RV  FG++I+ +   +PL
Sbjct: 194 QFLRLLVDIQYQRNDMSFTRGAFRVKGDTVDIIPAY-EELAVRVEFFGDEIDSLFYIHPL 252

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG  IR V+ ++I+  +HYV     +  A+  IKEEL+ RL ELE  G+LLEAQRL  R 
Sbjct: 253 TGDVIREVDELRIFPATHYVAGPERMEKAIAAIKEELEQRLAELENRGKLLEAQRLRMRT 312

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
            YDLEM++  G    IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM
Sbjct: 313 EYDLEMIQQVGFTSGIENYSRHIDGRPAGSAPATLIDYFPEDFLTIIDESHVTVPQIGGM 372

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           + GD  RK  L E+GFRLPS +DNRPL +EE++  +   + +SATPG +E+    G  VE
Sbjct: 373 FEGDMSRKRNLVEHGFRLPSALDNRPLTWEEFDDRKGQCVYMSATPGDYEIAAAGGEFVE 432

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q+IRPTGLVDP VE+R  + Q++D+ ++I    ++  R+L+T LTKRMAEDLT+YL E  
Sbjct: 433 QVIRPTGLVDPKVEVRPTKGQIDDLIEQIRQRTEKNERVLVTTLTKRMAEDLTDYLLEHG 492

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           ++VRYMHS++ TL+R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLR
Sbjct: 493 VKVRYMHSDIDTLKRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLR 552

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S  SLIQTIGRAARNV+ +VI+YAD IT+S+Q AIDET RRR KQ+ +NK+H I+PQ ++
Sbjct: 553 STRSLIQTIGRAARNVSGEVIMYADKITESMQYAIDETERRRAKQIAYNKEHGIDPQPLR 612

Query: 727 EKIMEVIDPILLEDAATTNISIDA----------------QQLSLSKKKGKAHLKSLRKQ 770
           +KI +++D +   +       + A                Q   +++ + +  +  L +Q
Sbjct: 613 KKIADILDQVAELEGKEAAEDVAASLSSDAAVASPGIDQKQAGEMARPQLEKLISDLTEQ 672

Query: 771 MHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           M  AA  L FE A R+RDEI+ LK     +G+ ++
Sbjct: 673 MKAAARELKFELAGRLRDEIQDLKKE--LRGMKEA 705


>gi|167765635|ref|ZP_02437688.1| hypothetical protein CLOSS21_00119 [Clostridium sp. SS2/1]
 gi|167712681|gb|EDS23260.1| hypothetical protein CLOSS21_00119 [Clostridium sp. SS2/1]
          Length = 662

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/657 (54%), Positives = 475/657 (72%), Gaps = 3/657 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI +L KG     + + LLGVTGSGKTFTMA +I+ + +P +
Sbjct: 1   MDHFELVSEYEPTGDQPQAIEKLTKGFQDGNQFETLLGVTGSGKTFTMANIIQNLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+SS+N++ID+
Sbjct: 61  ILAHNKTLAAQLYSEFKAFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSVNDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L+ER D IVVSSVSCIYGIGS ESYS+M++ L+ G   ++ E++  L+  QY
Sbjct: 121 LRHSATAALIERKDVIVVSSVSCIYGIGSKESYSEMMISLRPGMIKDRDEVIDDLINIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RGTFRV GD +EI P    + A RV  FG++I+ I EF  LTG+  R++   
Sbjct: 181 VRSELDFKRGTFRVKGDVLEILPVSTFEDAVRVEFFGDEIDRIVEFDVLTGEVKRSLNFA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV P+  +  A+K IKEEL  ++   ++  +L+EAQR+ +R  +D+EML  TG
Sbjct: 241 AIFPASHYVVPQEQIERAIKGIKEELAEQVTYFKEHDQLIEAQRIAERTNFDIEMLRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L G  PG+PP TL ++  +D L+ +DESH+T+PQI GMY GD  RK+TL
Sbjct: 301 FCSGIENYSRHLAGLEPGQPPSTLIDFFGDDFLMIIDESHITVPQIGGMYAGDQSRKSTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL F E+       + VSATPG +E E  + +  EQIIRPTGL+DP
Sbjct: 361 VDFGFRLPSAKDNRPLEFGEFEQKIDQMLFVSATPGKYEEEH-ELLRAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    Q++D+  EI+    +G ++L+T LTKRMAE+LT+Y+ E  IRV+Y+HS++ 
Sbjct: 420 AINVRPVEGQIDDLLGEIHKETDKGNKVLVTTLTKRMAEELTDYMREVGIRVKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI+RDLR+G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSL+QTIGR
Sbjct: 480 TLERIEIVRDLRMGVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLVQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD +T S+  AI ET RRRE Q E+NK+H I PQ++K+ I ++I    
Sbjct: 540 AARNSEGHVIMYADHMTDSMHAAITETERRREIQDEYNKEHGITPQTIKKDIRDLIKISD 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             +  T     D +  S+SKK+ K  ++ L K+M+ AA  LNFE AA++RDE+K  K
Sbjct: 600 EHEEETGGYEKDME--SMSKKELKEVIERLSKKMNQAAAELNFELAAQLRDELKEFK 654


>gi|227500159|ref|ZP_03930228.1| excision endonuclease subunit B [Anaerococcus tetradius ATCC 35098]
 gi|227217681|gb|EEI82985.1| excision endonuclease subunit B [Anaerococcus tetradius ATCC 35098]
          Length = 656

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/659 (54%), Positives = 469/659 (71%), Gaps = 8/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q++Y P GDQP AI +L KGI   +  Q+L GVTGSGKTFTMA +I+ +QRP +V+A
Sbjct: 3   FNLQSNYKPRGDQPIAIDKLTKGIEDGKHHQILRGVTGSGKTFTMANIIQNVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL++EFK FFP NAVEYFVSYYDYYQPEAYV  TDTYI K+SSIN++ID+MRH
Sbjct: 63  HNKTLAYQLFTEFKEFFPDNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G    Y +++V L+    +  ++++  L+  QY R 
Sbjct: 123 SATMALFERRDVIIVASVSCIYGLGDPIEYQKLVVSLRPSQEISPEDVMRKLIDVQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFR  GD ++IFP+  +  A R+  FG++I+EISEF  LTG+    +    IY
Sbjct: 183 DVDFSRGTFRRRGDILDIFPAGFDQKAIRIEFFGDEIDEISEFDALTGKVTAKISHAYIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T       A+  I+EEL+ RL EL +E +LLEAQRLEQR  YD+EML   G C 
Sbjct: 243 PASHYATSSEKTEKAIVSIEEELEERLFELNRENKLLEAQRLEQRTKYDIEMLREIGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y PED +L VDESHV+IPQ+ GMY GD  RK  L +Y
Sbjct: 303 GIENYSRHLSQRPAGSRPYTLIDYFPEDFILMVDESHVSIPQVGGMYEGDRSRKQNLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L    I VSATPG +ELE+  G +V+QIIRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLKFFEFEDLIKQAIYVSATPGPYELEKTHGQMVDQIIRPTGLLDPLIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+ +E++   ++  R+L+T LTK+MAEDLT YL E  I+VRY+HS++KT+E
Sbjct: 423 VRPTKNQIDDLIEEVHKTIEKKERVLVTTLTKKMAEDLTTYLTENGIKVRYLHSDIKTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLG+FDVLVGINLLREGLDIPE  L+AILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RSEIIRELRLGEFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YADTITKS++ AIDET RRR+ Q + NK H I P ++K+ I E+I       
Sbjct: 543 NSEGRVIMYADTITKSMKKAIDETERRRKIQEDFNKVHGIVPTTIKKNIAEIIQI----- 597

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
              T    + +    SK   +  L ++  +M+ AA+ L+FE AA +RD+IK +K +   
Sbjct: 598 ---TKKKEEEEIEEFSKDDIETILINMESEMYKAAEELDFERAAALRDQIKAMKDNFTG 653


>gi|289554593|ref|ZP_06443803.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis KZN
           605]
 gi|289439225|gb|EFD21718.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis KZN
           605]
          Length = 711

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/704 (51%), Positives = 480/704 (68%), Gaps = 30/704 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
            ++    +    F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +
Sbjct: 8   RAVEEIVRAGGHFEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWL 67

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+
Sbjct: 68  IERLQRPTLVMAPNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKD 127

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN+ ++R+RHSAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  L
Sbjct: 128 SSINDDVERLRHSATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGL 187

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG
Sbjct: 188 LRLLVDVQYTRNDMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTG 246

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + IR V++++I+  +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  Y
Sbjct: 247 EVIRQVDSLRIFPATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNY 306

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G C  IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY 
Sbjct: 307 DIEMMRQVGFCSGIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYE 366

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L EYGFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+
Sbjct: 367 GDISRKRNLVEYGFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQV 426

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 427 IRPTGLVDPKVVVKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIR 486

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSEV TL R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 487 VRYLHSEVDTLRRVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSS 546

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++K
Sbjct: 547 RSLIQTIGRAARNVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKK 606

Query: 729 IMEVIDPILLEDAATTNISIDA---------------------------QQLSLSKKKGK 761
           I +++D +  E   T  + +                                ++ + +  
Sbjct: 607 IADILDQVYREADDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELA 666

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             +K L  QM  AA +L FE AAR RDEI  LK     +G+D +
Sbjct: 667 DLIKDLTAQMMAAARDLQFELAARFRDEIADLKRE--LRGMDAA 708


>gi|227541521|ref|ZP_03971570.1| excision endonuclease subunit B [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227182677|gb|EEI63649.1| excision endonuclease subunit B [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 680

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/681 (51%), Positives = 490/681 (71%), Gaps = 9/681 (1%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           +    +    F++ ++Y P+GDQP AI +L + I   EK  +L+G TG+GK+ T A +IE
Sbjct: 1   MEEVERREGTFEVISEYEPAGDQPKAIKELTERIQRGEKDIVLMGATGTGKSATAAWLIE 60

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SS
Sbjct: 61  QVQRPTLVMAPNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSS 120

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           INE ++R+RHSAT +LL R D +VVSSVSCIYG+G+ +SY    +++++G+ +++   L 
Sbjct: 121 INEDVERLRHSATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSLKIEVGEEIDRDRFLR 180

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV  QY+R D  + RG FRV GD+++I P++ E+VA RV  FG++++++   +PLTG+ 
Sbjct: 181 LLVDIQYERNDYDLKRGAFRVKGDTVDIIPAY-EEVAVRVEFFGDEVDQLYYIHPLTGEI 239

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           IRNV+ ++I+  +HY+     +  A++ I+EEL+ R+   E  G+LLEAQRL  R  YDL
Sbjct: 240 IRNVDVLRIFPATHYIASEGRVEKAIEQIREELEERITSFENRGKLLEAQRLRMRTEYDL 299

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+E  G C  IENYSR++ GR  G+PPPTL +Y PED L  +DESHVT+PQI GMY GD
Sbjct: 300 EMIEEMGFCSGIENYSRHMDGREAGDPPPTLIDYFPEDFLTIIDESHVTVPQIGGMYEGD 359

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK  L E+GFRLPS +DNRPL +EE+   +  T+ +SATPG +EL    G  VEQ+IR
Sbjct: 360 ASRKRNLVEFGFRLPSALDNRPLTWEEFEERKGQTVYMSATPGDYELAAAGGEFVEQVIR 419

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++  + Q++D+  EI + A++  R+L+T LTK+MAEDLTEYL E  +RVR
Sbjct: 420 PTGLVDPKIVVKPTKGQIDDLIHEIRVRAEKKERVLVTTLTKKMAEDLTEYLQENGVRVR 479

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           YMHS+V TL+R+E++R LRLG++DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  S
Sbjct: 480 YMHSDVDTLQRVELLRKLRLGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTKS 539

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD+IT S+Q AIDET RRRE Q+ +NK+H I+PQ +++KI 
Sbjct: 540 LIQTIGRAARNVSGEVHMYADSITDSMQQAIDETERRREMQIAYNKEHGIDPQPLRKKIA 599

Query: 731 EVIDPILLEDAATTNISIDA------QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           +++D +  +       S DA         ++++ + +  +K LR QM  AA  LNFE AA
Sbjct: 600 DILDLVYEDAEEGETPSADAVVAKDYDVSTMAQDEVEKLIKDLRAQMGAAARELNFELAA 659

Query: 785 RIRDEIKRLKSSPYFQGLDDS 805
           R+RDEI  L+     +GL ++
Sbjct: 660 RLRDEIVSLEKE--LRGLKEA 678


>gi|15604076|ref|NP_220591.1| excinuclease ABC subunit B [Rickettsia prowazekii str. Madrid E]
 gi|6226296|sp|Q9ZDW2|UVRB_RICPR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|3860767|emb|CAA14668.1| EXCINUCLEASE ABC SUBUNIT B (uvrB) [Rickettsia prowazekii]
 gi|292571799|gb|ADE29714.1| Excinuclease ABC subunit B [Rickettsia prowazekii Rp22]
          Length = 662

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/661 (58%), Positives = 489/661 (73%), Gaps = 2/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + + Y P+GDQP AI +++ G++S+++ Q+LLG+TGSGKTFTMA +IE   RP +
Sbjct: 1   MNNFSIISGYKPAGDQPKAIDEIITGLNSKKRSQMLLGITGSGKTFTMANIIERTNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MA NK LAAQ+Y E K+ FP NAVEYFVSYYDYYQPE+Y+ RTDT+IEK+SSINEQID 
Sbjct: 61  IMAHNKTLAAQIYLEMKSIFPKNAVEYFVSYYDYYQPESYIVRTDTFIEKDSSINEQIDL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSATRSLLER D IV+SSVSCIYG+G+ + Y QM V L+ G +  + +LL+ L+  QY
Sbjct: 121 MRHSATRSLLERRDVIVISSVSCIYGLGAPDLYYQMTVHLEPGQNYPRDKLLNDLINLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR DIG  RG FRV GD+++IFPSH  D AWR+S FG+++E I EF PLTG+K+  ++  
Sbjct: 181 KRNDIGFERGCFRVKGDNMDIFPSHYSDKAWRLSFFGDELEYIHEFDPLTGEKLTQLDKA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+ NSH+V PR  +N A+  I+ EL+ RL  L+ + +L+EA+RL QR  YDLEML  TG
Sbjct: 241 MIFGNSHFVMPRERINHAISSIEVELQKRLEFLKSQDKLIEAKRLNQRTLYDLEMLTETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC+ IENYSR+ TGRN G+PPPTLFEY+PED+LLF+DESHV++PQI  MY  D  RK  L
Sbjct: 301 SCKGIENYSRFFTGRNAGQPPPTLFEYLPEDALLFIDESHVSVPQIRAMYNSDRARKEVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEEW   RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGQFELEETGGTVVELIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              I+ A  QVED+  EI      GLRIL+T LTK+MAEDLT YL +   +  Y+HS + 
Sbjct: 421 ECIIKPATNQVEDLISEIQTTINTGLRILVTTLTKKMAEDLTSYLQDLQYKTYYLHSNIH 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI+R+LR G  D+LVGINLLREG+DIPECGLVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 481 TLERIEILRNLRQGTIDILVGINLLREGIDIPECGLVAILDADKEGFLRSETSLIQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   KVILYAD +TKSI  A+ ET RRR+ Q E+NKKH I P+++   I  +    L
Sbjct: 541 AARNSRGKVILYADKMTKSIDKAVSETLRRRQIQQEYNKKHGIIPKTINRAIHAL--ESL 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            E          A  L  +  K KAH+  L+K+M  AA NL FE+AA++R+++K L+ + 
Sbjct: 599 EEIHDNKLDKKQANALLNNPAKLKAHMDKLKKEMFKAASNLEFEQAAKLRNQLKALEEAA 658

Query: 798 Y 798
            
Sbjct: 659 L 659


>gi|29653858|ref|NP_819550.1| excinuclease ABC subunit B [Coxiella burnetii RSA 493]
 gi|161829993|ref|YP_001596449.1| excinuclease ABC subunit B [Coxiella burnetii RSA 331]
 gi|212212986|ref|YP_002303921.1| excinuclease ABC subunit B [Coxiella burnetii CbuG_Q212]
 gi|81839094|sp|Q83E18|UVRB_COXBU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189037963|sp|A9NC09|UVRB_COXBR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226698333|sp|B6J1E8|UVRB_COXB2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|29541121|gb|AAO90064.1| excinuclease ABC subunit B [Coxiella burnetii RSA 493]
 gi|161761860|gb|ABX77502.1| excinuclease ABC, B subunit [Coxiella burnetii RSA 331]
 gi|212011396|gb|ACJ18777.1| excinuclease ABC subunit B [Coxiella burnetii CbuG_Q212]
          Length = 672

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/665 (54%), Positives = 488/665 (73%), Gaps = 8/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L+ G+      Q LLGVTGSGKTFT+A  IE +QRP +++ 
Sbjct: 5   FKLTSKFKPSGDQPQAIEKLVAGLEDGLAYQTLLGVTGSGKTFTIANAIEKVQRPTLILE 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ Y+E + FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN+ I++MR 
Sbjct: 65  PNKTLAAQFYAEMREFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++ ER+D I++++VS IYG+G  +SY +M++ L  GD ++Q+++L  L + QY R 
Sbjct: 125 SATKAITERHDTIIIATVSAIYGLGDPDSYLKMLLHLTRGDQIDQRKILQRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + R T+RV GD I+I+P+  E  A RV +F +++E +S F PLTG+ +R V  I +Y
Sbjct: 185 DLELRRATYRVNGDIIDIYPADSEREAVRVELFDDEVENLSYFDPLTGEMLRRVPRITVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  L + +  IK ELK RL +LEK  +L+E QRLEQR  +D+EM+   G C 
Sbjct: 245 PKTHYVTPREKLLSTLDQIKIELKERLSQLEKANKLVERQRLEQRTKFDMEMILELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTL +Y+P+D+LL +DESHVTIPQ+ GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRNEGEPPPTLIDYLPKDALLIIDESHVTIPQLGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+  L P TI +SATPG +E +Q    +VE ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFDEFEKLAPQTIFISATPGPYEEKQSDQ-VVELLVRPTGLIDPEIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A Q  R+L+T LTKRMAEDLTEY  E N+RVRY+HS++ T+E
Sbjct: 424 VRPVATQVDDLLSEIKKRAAQNERVLVTTLTKRMAEDLTEYFTEHNVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           NV+ K ILYAD IT S++ A++E  RRR  Q  +N+KH+I P+S+++ + E+I+      
Sbjct: 544 NVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTYT 603

Query: 739 -----EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                 + A      +A+ ++++ K+    L+ L +QM+  A NL FEEAA +RD+I+ +
Sbjct: 604 ERGRFVNQAQLIAEEEAKYIAMTPKQLAKELRKLEEQMYHHARNLEFEEAAAVRDKIQHI 663

Query: 794 KSSPY 798
           +    
Sbjct: 664 RKGLL 668


>gi|253681688|ref|ZP_04862485.1| excinuclease ABC subunit B [Clostridium botulinum D str. 1873]
 gi|253561400|gb|EES90852.1| excinuclease ABC subunit B [Clostridium botulinum D str. 1873]
          Length = 656

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/660 (53%), Positives = 473/660 (71%), Gaps = 4/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P+GDQP AI  + KGI   EK Q LLGVTGSGKTFTMA +IE +Q+P +
Sbjct: 1   MEKFKIHSVYKPTGDQPKAIKSISKGILKGEKFQTLLGVTGSGKTFTMANIIEQVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF+ FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID+
Sbjct: 61  VLAHNKTLAAQLTSEFREFFPKNCVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +LLER D IVV+SVSCIYG+G+ E Y ++ V L+ G   ++ E++  LV  QY
Sbjct: 121 LRHSATSALLERKDVIVVASVSCIYGLGNPEEYKKLTVSLREGMQKDRDEIMRQLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R +I  +RGTFR  GD ++IFP+   +V  RV  FG++I++I EF  LTG  +   +  
Sbjct: 181 ERNEINFVRGTFRAKGDVLDIFPAAATNVGIRVEFFGDEIDKIREFDVLTGNILNTRKHA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+ T +  L  A+K I+EEL+ R+ EL  E +LLEAQR++QR  +D+EM+   G
Sbjct: 241 LIFPASHFATSKEKLEIAIKKIEEELEERVRELTAEDKLLEAQRVKQRTNFDIEMMREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L GR  G PP TL +Y PED LLF+DESHVT+PQI  MY GD  RK  L
Sbjct: 301 YCSGIENYSRILDGRRAGTPPKTLIDYFPEDFLLFIDESHVTLPQIKAMYGGDKSRKDNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLP   DNRPL+FEE+      TI VSATP  +E +     I EQIIRPTGL+DP
Sbjct: 361 VQYGFRLPCAYDNRPLKFEEFEGKLNQTIFVSATPSQYEFQHSTN-IAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++  + Q++D+Y  IN    +G R+L+T LTK+M+EDLTEYL +  ++  Y+HS + 
Sbjct: 420 EIIVKPIKGQIDDLYANINETISKGFRVLVTTLTKKMSEDLTEYLKDMGVKTEYLHSSID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T++R+EIIRDLR GKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIKRMEIIRDLRKGKFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+YADTITK++  AI ET RRR+ Q+++N+++ I P+++ + I +VI   +
Sbjct: 540 AARNSESKVIMYADTITKAMDKAISETNRRRKIQMQYNEEYGIVPRTILKDIRDVIQTKV 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            ED     ++    + ++SK++ +  +    K+M  AA  L FE+AA IRD+I++LK   
Sbjct: 600 SEDKEEYIVN---NKDTMSKEQIEKLINKYEKEMKKAAKELQFEKAAEIRDKIQKLKEEL 656


>gi|327330664|gb|EGE72410.1| excinuclease ABC subunit B [Propionibacterium acnes HL097PA1]
          Length = 701

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/694 (51%), Positives = 482/694 (69%), Gaps = 27/694 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + + ++ +  F + +++ PSGDQP AIA+L K ++S E+  +LLG TG+GKT T+A +
Sbjct: 2   RPVTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
            E +QRP +VM PNK LAAQ   E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+
Sbjct: 62  AERLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+NE+++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y   ++ L++G   ++ EL
Sbjct: 122 SSLNEEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R DI   RGTFRV GD++EIFP + E+ A RV  FG++IE ++  +PLTG
Sbjct: 182 LRDLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             I   E + ++  +HYV     +  A+  I++EL+ RL  LE++G+LLEAQRL  R TY
Sbjct: 241 GIISEDEQVYVFPATHYVAGPERMERAIASIQQELEERLAVLERDGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM++  G+C  IENYSR++ GR PG  P  L +Y PED +L +DESHVT+PQI GMY 
Sbjct: 301 DIEMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS MDNRPL+F+E+      T+ +SATPGS+E E+  G +VEQI
Sbjct: 361 GDMSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERANG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++  R Q++D+  EI     +G R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 420 IRPTGLVDPEIIVKPTRGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            RY+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+
Sbjct: 480 TRYLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++K
Sbjct: 540 RSLIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISID-------------------------AQQLSLSKKKGKAH 763
           I ++ + +  E A T  +                                 ++++     
Sbjct: 600 IGDITEMLAREGADTDELVEKFNYGKGHRGYDSMITDEQRAAQGRRLDVSKMAEEDLGKL 659

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +  L  +M  AA  L FE AAR+RDEI  LK   
Sbjct: 660 IVDLTTEMRSAAGELKFEVAARLRDEIADLKKEL 693


>gi|269218447|ref|ZP_06162301.1| excinuclease ABC subunit B [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211558|gb|EEZ77898.1| excinuclease ABC subunit B [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 695

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/684 (52%), Positives = 484/684 (70%), Gaps = 19/684 (2%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
           +   +    FQ+ + Y PSGDQPAAIA+L + I + EK  +LLG TG+GK+ T A +IE 
Sbjct: 7   SEIERVEKPFQVVSQYAPSGDQPAAIAELAERIEAGEKDVVLLGATGTGKSATTAWLIEK 66

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +QRP +++ PNK LAAQ+ +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSI
Sbjct: 67  VQRPTLIIEPNKTLAAQMAAEFRELMPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSI 126

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           N++++R+RHSAT SLL R D +VVSSVSCIYG+G+ + Y   +VQL++G  +++ EL+  
Sbjct: 127 NDEVERLRHSATNSLLTRRDTVVVSSVSCIYGLGTPQEYVARMVQLEVGQRIDRDELMRR 186

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
            V  QY R D+   RGTFRV GD++EI P + E++A R+  FG++I+ I+  +PLTG  I
Sbjct: 187 FVGMQYTRNDVAFARGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDAITLLHPLTGTVI 245

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
           R V+   ++  SHYV     +  A++ I+ EL  RL  L+ + ++LEAQRL+ R  YD+E
Sbjct: 246 RRVDRAHVFPASHYVAGPERMARALEGIEAELAERLDVLQTQNKMLEAQRLQMRTNYDVE 305

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M+   GSC  IENYSR++ GR PG PP TL +Y PED LL VDESHVT+PQI  MY GD 
Sbjct: 306 MMRNIGSCAGIENYSRHIDGRGPGTPPNTLLDYFPEDFLLIVDESHVTVPQIGAMYEGDM 365

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK TL +YGFRLPS MDNRPL+F E+      T+ +SATPG +E+E   G +VEQIIRP
Sbjct: 366 SRKRTLVDYGFRLPSAMDNRPLKFPEFLERVGQTVYLSATPGKYEMEHSDG-VVEQIIRP 424

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGLVDP V ++    Q++D+  +I    ++  R+L+T LTK+MAEDLT+YL ER+I+V Y
Sbjct: 425 TGLVDPEVVVKPTEDQIDDLLGQIKERVERNERVLVTTLTKKMAEDLTDYLAERDIKVEY 484

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS+V TL R+E++R+LRLG FDVLVGINLLREGLD+PE  LVAILDADK+GFLRS TSL
Sbjct: 485 LHSDVDTLRRVELLRELRLGTFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSTTSL 544

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARNV+ +VI+YAD+IT +++ AIDET RRR KQ+ +N++  I+PQ +++KI +
Sbjct: 545 IQTIGRAARNVSGQVIMYADSITPNMREAIDETNRRRAKQMAYNEERGIDPQPLRKKIAD 604

Query: 732 VIDPILLEDAATTNI-----------------SIDAQQLSLSKKKGKAHLKSLRKQMHLA 774
           V D +  ED  T  +                 ++     +  ++  K  ++ + + MH A
Sbjct: 605 VTDMLAREDIDTAALLEGGYRKERAASPEAPATLRESAAAEGERDLKGLIEEMTELMHEA 664

Query: 775 ADNLNFEEAARIRDEIKRLKSSPY 798
           A +L FE AAR RDEIK LKS  +
Sbjct: 665 AASLKFELAARYRDEIKGLKSELW 688


>gi|284990473|ref|YP_003409027.1| excinuclease ABC subunit B [Geodermatophilus obscurus DSM 43160]
 gi|284063718|gb|ADB74656.1| excinuclease ABC, B subunit [Geodermatophilus obscurus DSM 43160]
          Length = 704

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/684 (51%), Positives = 480/684 (70%), Gaps = 28/684 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ PSGDQPAAI  L + ++S EK  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 14  FRVVSEFQPSGDQPAAIEALAEKVNSGEKDTVLLGATGTGKSATTAWLIEQVQRPTLVMA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P  AVEYFVSYYDYYQPEAYVP+TDTYIEK+SS+NE+++R+RH
Sbjct: 74  PNKTLAAQLANEFRELLPDAAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSVNEEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VVS+VSCIYG+G+ E Y    +++K+G+  ++ ELL +LV +QY R 
Sbjct: 134 SATNSLLTRRDVVVVSTVSCIYGLGTPEEYVDRALKIKVGEERDRDELLRTLVTEQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+IE+FP + E++A R+ MFG+++E +   +PLTG+ +R V+ + ++
Sbjct: 194 DLSFTRGTFRVRGDTIEVFPVY-EELACRIEMFGDEVERLYYLHPLTGEVVREVDELFVF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+ EL++RL ELE++G+LLEAQRL  R TYD+EM+   G C 
Sbjct: 253 PATHYVAGPERMERAISTIEAELEVRLAELERQGKLLEAQRLRMRTTYDIEMMRQVGFCS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG     L +Y P+D LL +DESHVT+PQI GMY GD  RK TL E+
Sbjct: 313 GIENYSRHIDGRAPGTAGACLIDYFPDDFLLVIDESHVTVPQIGGMYEGDMSRKRTLVEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL++EE+      T+ +SATPG +EL +  G +VEQ+IRPTGLVDP V 
Sbjct: 373 GFRLPSAMDNRPLKWEEFTDRIGQTVYLSATPGDYELGRTGGEVVEQVIRPTGLVDPEVL 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI +  ++  R+L+T LTK+MAEDLT+YL E  I+VRY+HSEV TL 
Sbjct: 433 VKPTKGQIDDLVHEIRVRVEKDERVLVTTLTKKMAEDLTDYLLELGIKVRYLHSEVDTLR 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 493 RVELLRELRQGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGKSLIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YADTIT S+  AI+ET RRREKQ+ +N++  I+PQ +++KI++++D I    
Sbjct: 553 NVSGQVHMYADTITPSMAQAIEETNRRREKQIAYNRERGIDPQPLRKKIVDILDGIYRAA 612

Query: 741 AATTNI---------------------------SIDAQQLSLSKKKGKAHLKSLRKQMHL 773
               +I                           +       L + +    +  +  QM  
Sbjct: 613 EDAESIELVGGSGRQQSRGKAPVPGLSSKKAAKAGGIDVQGLPRAELADLITQMNDQMLA 672

Query: 774 AADNLNFEEAARIRDEIKRLKSSP 797
           AA  L FE AAR+RDE+  LK   
Sbjct: 673 AARELQFEVAARLRDELTELKKEL 696


>gi|314981311|gb|EFT25405.1| excinuclease ABC subunit B [Propionibacterium acnes HL110PA3]
 gi|315091730|gb|EFT63706.1| excinuclease ABC subunit B [Propionibacterium acnes HL110PA4]
          Length = 701

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/694 (51%), Positives = 481/694 (69%), Gaps = 27/694 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + + ++ +  F + +++ PSGDQP AIA+L K ++S E+  +LLG TG+GKT T+A +
Sbjct: 2   RPVTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
            E +QRP +VM PNK LAAQ   E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+
Sbjct: 62  AEKLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+NE+++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y   ++ L++G   ++ EL
Sbjct: 122 SSLNEEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R DI   RGTFRV GD++EIFP + E+ A RV  FG++IE ++  +PLTG
Sbjct: 182 LRDLVTNQYIRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I   E + ++  +HYV     +  A+  I++EL+ RL  LE++G+LLEAQRL  R TY
Sbjct: 241 EVISEDEQVYVFPATHYVAGPERMERAVASIQQELEERLAVLERDGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM++  G+C  IENYSR++ GR PG  P  L +Y PED +L +DESHVT+PQI GMY 
Sbjct: 301 DIEMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS MDNRPL F+E+      T+ +SATPGS+E E+  G +VEQI
Sbjct: 361 GDMSRKRTLVEHGFRLPSAMDNRPLEFDEFTQRIGQTVYLSATPGSYETERAHG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++    Q++D+  EI     +G R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 420 IRPTGLVDPEIIVKPTHGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            RY+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+
Sbjct: 480 TRYLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++K
Sbjct: 540 RSLIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI-------------------------SIDAQQLSLSKKKGKAH 763
           I ++ + +  E A T  +                                 ++++     
Sbjct: 600 IGDITEMLAREGADTDELFEKFNYGKGHRGYNSMITDEQRAAQGKRLDVSKMAEEDLGKL 659

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +  L  +M  AA  L FE AAR+RDEI  LK   
Sbjct: 660 IVDLTTEMRSAAGELKFEVAARLRDEIADLKKEL 693


>gi|255327552|ref|ZP_05368619.1| excinuclease ABC subunit B [Rothia mucilaginosa ATCC 25296]
 gi|255295446|gb|EET74796.1| excinuclease ABC subunit B [Rothia mucilaginosa ATCC 25296]
          Length = 722

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/713 (49%), Positives = 479/713 (67%), Gaps = 47/713 (6%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
              ++ +  F++ + + P+GDQP AIA+L + + + EK  +L+G TG+GK+ T A +IEA
Sbjct: 5   PEINRIVAPFEVVSPFQPAGDQPKAIAELTERVQNGEKDIVLMGATGTGKSATAAWLIEA 64

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +QRP +V+  NK LAAQL +E +   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSI
Sbjct: 65  VQRPTLVLVQNKTLAAQLANELRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSI 124

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           NE+++R+RHSAT SLL R D +VV++VSCIYG+G+ E Y + +V L+ G+ +++ ELL  
Sbjct: 125 NEEVERLRHSATNSLLTRRDVVVVATVSCIYGLGTPEEYIEQMVTLRRGEEIDRDELLRQ 184

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
            V  QY R D+   RGTFRV GD++EI P + E+ A RV  FG++IE I   +PLTG+ I
Sbjct: 185 FVAMQYARNDMDFHRGTFRVRGDTVEIIPMY-EENAIRVEFFGDEIEAIYTLHPLTGEVI 243

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
           R  E + ++  SHYV     +  A+  I++EL+ RL  LE +G+LLEAQRL  R TYDLE
Sbjct: 244 REEEEMYVFPASHYVAGPERMAKAITSIEDELRERLQTLESQGKLLEAQRLRMRTTYDLE 303

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M+E  G C  IENYSR++ GR PG  P  L +Y P+D LL +DESHVT+PQ+  MY GD 
Sbjct: 304 MMEQMGFCNGIENYSRHIDGRAPGSAPNCLLDYFPDDFLLIIDESHVTVPQVGAMYEGDM 363

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK TL E+GFRLPS MDNRPL++EE+      TI +SATPG +EL Q  G  VEQIIRP
Sbjct: 364 SRKRTLVEHGFRLPSAMDNRPLKWEEFLERIGQTIYLSATPGKYELSQADG-YVEQIIRP 422

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP + ++  + Q++D+ +EI +  ++  R+L+T LTKRMAEDLTEYL +  ++V+Y
Sbjct: 423 TGLIDPEIVVKPTKGQIDDLLEEIRVRVERDERVLVTTLTKRMAEDLTEYLLQHGVKVQY 482

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS+V TL R+E++R+LRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSL
Sbjct: 483 LHSDVDTLRRVELLRELRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSL 542

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARNV+ +V +YAD IT S+++AIDET RRRE Q  +N+ H I+PQ +++KI +
Sbjct: 543 IQTIGRAARNVSGQVHMYADKITDSMRVAIDETNRRREIQQAYNRAHGIDPQPLRKKIAD 602

Query: 732 VIDPILLEDAATTNISIDAQQ--------------------------------------- 752
           + D +  E+  T  +    +                                        
Sbjct: 603 ITDVLAREEEDTRELLQQRKSGKKGARTVSAGAKTGSATSSKIATSTPESEELLARAEAR 662

Query: 753 ------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
                  +   +     ++ + +QM +AA+NL FE AAR+RDE+  LK     
Sbjct: 663 VRADGLAAAPAEDLLDLIEQMNEQMRVAAENLQFELAARLRDELADLKKELRL 715


>gi|312135237|ref|YP_004002575.1| excinuclease ABC subunit B [Caldicellulosiruptor owensensis OL]
 gi|311775288|gb|ADQ04775.1| excinuclease ABC, B subunit [Caldicellulosiruptor owensensis OL]
          Length = 661

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/660 (55%), Positives = 483/660 (73%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +D+ P+GDQP AI  L +GI   EK Q LLGVTGSGKTFTMAKVIE +QRP +
Sbjct: 1   MKKFKLVSDFKPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSINE+ID+
Sbjct: 61  VLAHNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIY +GS E Y  + + L+ G + ++ E++  L++ QY
Sbjct: 121 LRHSATSALFERRDVIIVASVSCIYSLGSPEDYLNLTISLRPGMTKDRDEVIRELIRMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RG FRV GD +E+FP+   D A R+  FG++IE I+EF  +TG+ I     +
Sbjct: 181 ERNDIDFRRGRFRVRGDVLEVFPASNTDRAIRIEFFGDEIERITEFNVVTGEVIGRRNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYVT    L  A+K I+EEL+ RL EL   G+L+EAQRLEQR  YD+EML+  G
Sbjct: 241 AIFPASHYVTTAEKLKRAIKSIEEELEQRLKELRSMGKLVEAQRLEQRTRYDIEMLQEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSR+LTGR P  PP TL +Y P+D ++F+DESHVTIPQ+  MY GD  RK  L
Sbjct: 301 FCKGIENYSRHLTGRPPESPPYTLLDYFPKDFIMFIDESHVTIPQVRAMYNGDRARKDAL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL FEE+       I VSATPG +E+++    IVEQIIRPTGLVDP
Sbjct: 361 VEYGFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYEIKKS-SRIVEQIIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+   + Q++ +  EI    ++  R+L+T LTK+MAE LT+YL +  I+VRYMHS++ 
Sbjct: 420 EIEVHPVQGQIDHLIGEIRKRVEKNQRVLVTTLTKKMAESLTDYLKDVGIKVRYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ KVI+YAD IT ++Q AIDET RRR+ Q+E+N+KH I PQ+VK+ I ++I+  +
Sbjct: 540 AARNVDGKVIMYADRITNAMQRAIDETNRRRKIQIEYNQKHGIIPQTVKKGIRQIIEATV 599

Query: 738 LEDAATTNISIDAQQ--LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                     +  +    +++K++ K ++K L ++M   A  L FE+AA++RD+I  L+ 
Sbjct: 600 SVAEEEEKYEVVEKDIVKNMTKEEIKEYIKELEQEMKKLAIELEFEKAAKVRDKIFELRK 659


>gi|224475900|ref|YP_002633506.1| excinuclease ABC subunit B [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420507|emb|CAL27321.1| excinuclease ABC subunit B [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 660

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/657 (52%), Positives = 465/657 (70%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +DY P GDQPAAI +L +GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +V+
Sbjct: 5   PFKIVSDYEPQGDQPAAIKELTEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLVI 64

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLY+EFK  FP N VEYFVS+YDYYQPEAYVP TDT+IEK+++IN++ID++R
Sbjct: 65  AHNKTLAGQLYNEFKELFPENRVEYFVSFYDYYQPEAYVPSTDTFIEKDATINDEIDQLR 124

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT SL ER+D I+V+SVS I+G+G+ E YS ++V ++ G  +++ + L  LV  QY R
Sbjct: 125 HSATSSLFERDDVIIVASVSSIFGLGNPEEYSDLVVNIREGMEMDRSQFLRDLVDIQYTR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +E+FP+  E++  RV  FG++I+ ISE   LTG+ +R  E   I
Sbjct: 185 NDIDFKRGTFRVRGDVVEVFPASREEICIRVEFFGDEIDRISEVNYLTGEVLRQREHFSI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SHYVT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 245 FPASHYVTRDEKLKLAIERIEKELEERLKELRSENKLLEAQRLEQRTNYDLEMMREMGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +LT R  G  P TL +Y  +D L+ VDESHVT+PQI GMY GD  RK  L +
Sbjct: 305 SGIENYSVHLTLRPIGSTPYTLLDYFGDDWLVMVDESHVTLPQIRGMYNGDRARKQVLID 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL FEE+       + VSATPG +ELE    +  EQIIRPTGL+DP +
Sbjct: 365 HGFRLPSAIDNRPLTFEEFEEKAKQLVYVSATPGPYELEHTDEMT-EQIIRPTGLLDPKI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R  + Q++D+  EI     +  R+L+T LTK+M+EDLT YL E  I+V Y+HSE+KTL
Sbjct: 424 DVRPTKNQIDDLLSEIQDRVDKNERVLITTLTKKMSEDLTTYLKEAGIKVNYLHSEIKTL 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEIIRDLR+G +D +VGINLLREG+DIPE  LV ILDADKEGFLRS+ SL+QTIGRAA
Sbjct: 484 ERIEIIRDLRMGTYDAVVGINLLREGIDIPEVSLVVILDADKEGFLRSERSLVQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN + +VI+YAD IT S++ AIDET RRR+ Q E+N++H I PQ++ +KI +VI   + E
Sbjct: 544 RNEHGEVIMYADKITDSMKFAIDETERRRKIQNEYNEEHGITPQTIHKKIHDVISATV-E 602

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                          L+KK+ +  + ++ K+M  AA +L+FE A  +RD +  LK+ 
Sbjct: 603 TKEENEKDQKVVPKKLTKKEREKTIANIEKEMKKAAKDLDFERATELRDMLFELKAE 659


>gi|295105229|emb|CBL02773.1| Excinuclease ABC subunit B [Faecalibacterium prausnitzii SL3/3]
          Length = 685

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/657 (52%), Positives = 461/657 (70%), Gaps = 7/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AIAQL++G+   ++ Q LLGVTGSGKTFTMA VI    RP +V+A
Sbjct: 6   FELVSNYAPTGDQPQAIAQLVEGVQRGDRCQTLLGVTGSGKTFTMANVIAQCNRPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF++FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++IDR+RH
Sbjct: 66  HNKTLAAQLCTEFRSFFPNNAVEYFVSYYDYYQPEAYIPSTDTYIEKDSAINDEIDRLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +G    Y  M++ L+ G  +E+ EL   LV  QY+R 
Sbjct: 126 SATAALSERRDVIIVASVSCIYSLGDPIDYRSMVISLRPGMQMERDELCKKLVTLQYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  +R  FRV GD+++I+ +++ ++A RV  FG++I+ I+EF PLTG K   V+ + I+
Sbjct: 186 DVNFVRNKFRVHGDTVDIYLAYMSELAIRVEFFGDEIDRITEFNPLTGSKQNVVKHVAIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+        A++ I+ E   ++ +   EG+L+EAQR+ QR  YD+EML   G C+
Sbjct: 246 PASHYIVSAEKKAAALEKIRAECDAQVKQFTAEGKLIEAQRIAQRTNYDIEMLNEVGICK 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  L+GR PG  P TL +Y PED LLFVDESHVT+PQ+  MY GD+ RK TL EY
Sbjct: 306 GIENYSAVLSGRAPGSMPTTLLDYFPEDFLLFVDESHVTLPQVRAMYGGDYARKKTLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE        I VSATPG +E       + +Q+IRPTGL+DP + 
Sbjct: 366 GFRLPSAFDNRPLKFEEVESKLNQMIFVSATPGEYERRNS-SQVAQQVIRPTGLLDPVIS 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV D+  EIN   Q+  R+L+T LTK+MAEDLT+YL E+ I+V+YMH EV T E
Sbjct: 425 VRPVEGQVVDLLGEINARIQRQERVLVTTLTKKMAEDLTDYLTEQGIKVKYMHHEVDTFE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII+DLRLG  DV+VGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 485 RMEIIKDLRLGSIDVVVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S++ AI ET RRR  Q+ +N++H I P+++ + I + I+     +
Sbjct: 545 NAEGMVIMYADVVTDSMECAITETERRRAIQMAYNEEHGIVPKTIVKAIADSIEISDKAE 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            A  N         + K + +A ++ L ++M  AA  L FE AA +RD+I RL+   
Sbjct: 605 NAKRNT------RRMGKMEREAAIERLTREMKEAAKLLEFEHAAFLRDQIDRLRRGE 655


>gi|168181962|ref|ZP_02616626.1| excinuclease ABC, B subunit [Clostridium botulinum Bf]
 gi|237796846|ref|YP_002864398.1| excinuclease ABC subunit B [Clostridium botulinum Ba4 str. 657]
 gi|259710323|sp|C3KV20|UVRB_CLOB6 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|182674913|gb|EDT86874.1| excinuclease ABC, B subunit [Clostridium botulinum Bf]
 gi|229261871|gb|ACQ52904.1| excinuclease ABC, B subunit [Clostridium botulinum Ba4 str. 657]
          Length = 662

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/657 (52%), Positives = 464/657 (70%), Gaps = 2/657 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + ++P+GDQP AI  + KGI   EK Q L+GVTGSGKTFTMA +IE  Q+P +
Sbjct: 1   MNQFKVISKFNPTGDQPKAIKSIAKGIEKGEKFQTLIGVTGSGKTFTMANIIEKAQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF+ FFP+NAVEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID+
Sbjct: 61  VLAHNKTLAAQLCSEFREFFPNNAVEYFVSYYDYYQPEAYVAQSDTYIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  LV+ QY
Sbjct: 121 LRHSATSALFERKDVIIVASVSCIYGLGNPEEYKKLTISLREGMEKDRDEIIKKLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD ++IFP+     A RV  FG++I+ I EF  LTG+ I  ++ I
Sbjct: 181 ERNDIDFSRGTFRVKGDVLDIFPASSSSKAIRVEFFGDEIDRIKEFDVLTGETITKLKHI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+ T +  L  A+K I+EEL+ R+ EL  + ++LEAQRL+QR  +D+EM+   G
Sbjct: 241 SIFPASHFATSKDRLEIAIKNIEEELEERVKELVSQDKILEAQRLKQRTNFDIEMMREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L GR  G PP TL +Y P+D LLF+DESHVT+PQ+  M  GD  RK +L
Sbjct: 301 YCTGIENYSRVLDGRAKGTPPQTLLDYFPQDFLLFIDESHVTLPQVKAMQAGDKSRKDSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP   DNRPL F+E+       + VSATP  +ELE       EQ+IRPTGL+DP
Sbjct: 361 VEYGFRLPCAYDNRPLTFKEFENKLNQIVFVSATPAKYELEYSTN-TAEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++  + Q++D+Y  I    ++G RIL+T LTK+MAEDLT+YL E  ++ RY+HS++ 
Sbjct: 420 EIIVKPVKGQIDDLYTSIQETIKKGFRILVTTLTKKMAEDLTDYLKEMGVKTRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++II DLR G+F VLVGINLLREGLDIPE  LV ILDADKEGFLRS+TSLIQT+GR
Sbjct: 480 TIERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+Y D ITKS++  I ET RRR+ Q+E+N+KH I P+++ + I EVI    
Sbjct: 540 AARNSESKVIMYGDVITKSMEKTIKETNRRRKIQMEYNEKHGIVPKTIIKDIREVIQISD 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + +      +++    S +       ++   ++M  AA NL FE+AA +RD I +LK
Sbjct: 600 IAEERKEYDNLNEALKSYN-NDIDKLIEKYEEEMREAAQNLQFEKAAHLRDVIYKLK 655


>gi|154706129|ref|YP_001424888.1| excinuclease ABC subunit B [Coxiella burnetii Dugway 5J108-111]
 gi|189037962|sp|A9KCU2|UVRB_COXBN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|154355415|gb|ABS76877.1| excinuclease ABC subunit B [Coxiella burnetii Dugway 5J108-111]
          Length = 672

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/665 (54%), Positives = 488/665 (73%), Gaps = 8/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L+ G+      Q LLGVTGSGKTFT+A  IE +QRP +++ 
Sbjct: 5   FKLTSKFKPSGDQPQAIEKLVAGLEDGLAYQTLLGVTGSGKTFTIANAIEKVQRPTLILE 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ Y+E + FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN+ I++MR 
Sbjct: 65  PNKTLAAQFYAEMREFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++ ER+D I++++VS IYG+G  +SY +M++ L  GD ++Q+++L  L + QY R 
Sbjct: 125 SATKAITERHDTIIIATVSAIYGLGDPDSYLKMLLHLTRGDQIDQRKILQRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + R T+RV GD I+I+P+  E  A RV +F +++E +S F PLTG+ +R V  I +Y
Sbjct: 185 DLELRRATYRVNGDIIDIYPADSEREAVRVELFDDEVENLSYFDPLTGEMLRRVPRITVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  L + +  IK ELK RL +LEK  +L+E QRLEQR  +D+EM+   G C 
Sbjct: 245 PKTHYVTPREKLLSTLDQIKIELKERLSQLEKANKLVERQRLEQRTKFDMEMILELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTL +Y+P+D+LL +DESHVTIPQ+ GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRNEGEPPPTLIDYLPKDALLIIDESHVTIPQLGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+  L P TI +SATPG +E +Q    +VE ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFDEFEKLAPQTIFISATPGPYEEKQSDQ-VVELLVRPTGLIDPEIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A Q  R+L+T LTKRMAEDLTEY  E N+RVRY+HS++ T+E
Sbjct: 424 VRPVATQVDDLLSEIKKRAAQNERVLVTTLTKRMAEDLTEYFTEHNVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           NV+ K ILYAD IT S++ A++E  RRR  Q  +N+KH+I P+S+++ + E+I+      
Sbjct: 544 NVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTYT 603

Query: 739 -----EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                 + A      +++ ++++ K+    L+ L +QM+  A NL FEEAA +RD+I+ +
Sbjct: 604 ERGRFVNQAQLIAEEESKYIAMTPKQLAKELRKLEEQMYHHARNLEFEEAAAVRDKIQHI 663

Query: 794 KSSPY 798
           +    
Sbjct: 664 RKGLL 668


>gi|313901314|ref|ZP_07834801.1| excinuclease ABC, B subunit [Clostridium sp. HGF2]
 gi|312953922|gb|EFR35603.1| excinuclease ABC, B subunit [Clostridium sp. HGF2]
          Length = 658

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/660 (52%), Positives = 458/660 (69%), Gaps = 3/660 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + +DY P GDQP AI +L+ GI   +K Q+LLG TG+GKTFT++ VI  + +P 
Sbjct: 2   ETKLFDLVSDYQPQGDQPKAIQELVDGIQKGKKQQVLLGATGTGKTFTISNVIAKVNKPT 61

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V A NK LA QLYSEFK FFP+N VEYFVS +DYYQPEAY+P +DTYI+K ++ N ++D
Sbjct: 62  LVFAHNKTLAGQLYSEFKEFFPNNRVEYFVSNFDYYQPEAYIPSSDTYIDKNATTNMELD 121

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            +R +A  S+LER D I+++SV+CIYG  + E Y +M   +++GD +++KEL+  LV +Q
Sbjct: 122 MLRMAAVNSILERRDTIIIASVACIYGASNPEQYREMFFSIRVGDIIDRKELMGKLVARQ 181

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D+ ++RGTFRV GD IE+ P H +    R+ MF ++IE I E  PLTG+ +     
Sbjct: 182 YTRNDMDLLRGTFRVRGDVIEVAPGHTDSFILRIEMFDDEIERICEVDPLTGKVLNAYTV 241

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y  S Y T +  +N A   I+EEL  RL  LE EG+LLE QRLEQR  YD+E L   
Sbjct: 242 YVVYPASGYATKQEIINRAANTIEEELADRLQVLENEGKLLEKQRLEQRARYDIEALREF 301

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSR++ GR PGE P TLF+Y P+D LL VDESHV++PQI GMY GD  RK T
Sbjct: 302 GVCPGIENYSRHIDGRKPGERPYTLFDYFPDDFLLVVDESHVSLPQIRGMYNGDRARKET 361

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRP+RFEE+  +    I VSATPG++ELEQ +G I+EQIIRPTGL+D
Sbjct: 362 LVNYGFRLPSALDNRPMRFEEFEKMINQAIFVSATPGNYELEQTKGEIIEQIIRPTGLLD 421

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P V +R  + Q++D+ DEI    ++  R L+T LT RMAEDLT YL   + +V ++H EV
Sbjct: 422 PVVTVRPTQGQIDDLVDEIRTRIEKNERTLITTLTVRMAEDLTSYLKGMDFKVAWLHHEV 481

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           KT+ER EIIRDLR GK+DVL+GINLLREGLDIPE  L+ ILDADKEGFLRS+ SLIQ IG
Sbjct: 482 KTIERTEIIRDLRKGKYDVLIGINLLREGLDIPEVSLITILDADKEGFLRSERSLIQIIG 541

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN + +VI+YAD IT S+Q A+DET RRRE Q+ +N+KH I P+++ + I EV+   
Sbjct: 542 RAARNAHGQVIMYADKITDSMQKALDETARRREIQIAYNEKHGITPKTIIKPIHEVVRSK 601

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             ++     I   A+         +  L +L K+M  AA  L+FE AA +RD +  L++S
Sbjct: 602 ETQEMTAKYIGKKAKVSKK---DKEKLLANLEKEMREAAKVLDFERAAELRDILLELRNS 658


>gi|261854977|ref|YP_003262260.1| excinuclease ABC subunit B [Halothiobacillus neapolitanus c2]
 gi|261835446|gb|ACX95213.1| excinuclease ABC, B subunit [Halothiobacillus neapolitanus c2]
          Length = 679

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/672 (54%), Positives = 484/672 (72%), Gaps = 13/672 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F + TDY P+GDQPAAIA+L++G+      Q LLGVTGSGKTFT+A VI+ +QRPA+V
Sbjct: 4   TRFTLVTDYQPAGDQPAAIARLVEGLQDGLAQQTLLGVTGSGKTFTIANVIDRLQRPALV 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 64  LAPNKTLAAQLYGELKGFFPNNAVEYFVSYYDYYQPEAYVPASDTFIEKDASVNEHIEQM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D I+V++VS IYG+G  ++Y +MI+ L  G+  +Q+++L  L + QY 
Sbjct: 124 RLSATKALLERRDVIIVATVSSIYGLGDPDAYLKMILHLVRGEKADQRQILRRLAEMQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RGT+RV GD I+I PS  +D   RV +F ++IE+IS F PLTG   R +    
Sbjct: 184 RNDMEFRRGTYRVRGDVIDIHPSESDDEGVRVELFDDEIEQISLFDPLTGAIRRRLPRFT 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY +SHYVTPR  +  A++ IK+EL  +L  L  E +L+EAQRL QR  +D+EM+   G 
Sbjct: 244 IYPSSHYVTPRERILAAVESIKDELTQQLDHLNAENKLVEAQRLAQRTRFDIEMMYELGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR+PGEPPP L++Y+P D+LL +DESHVT+PQ+  MY+GD  RK TL 
Sbjct: 304 CNGIENYSRYLSGRHPGEPPPCLYDYLPPDALLIIDESHVTVPQLGAMYKGDRSRKETLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            +GFRLPS +DNRPL+F+E+  + P TI VSATPG +E       +VEQ++RPTGL+DP 
Sbjct: 364 NFGFRLPSALDNRPLKFDEFERMMPQTIHVSATPGPYEGSHSAQ-VVEQVVRPTGLIDPQ 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR   +QV+DV  EI   A +  R+L+T LTKRMAEDL +YL E ++RVRY+HS+V T
Sbjct: 423 IEIRPVASQVDDVLSEIRDRASRRERVLITTLTKRMAEDLADYLAEHDVRVRYLHSDVDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FD L+GINLLREGLDIPE  LVAI DADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERVEIIRDLRLGLFDALIGINLLREGLDIPEVSLVAIFDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN++ K ILYAD IT +++ AIDET RRR KQ+EHN +  I P+ + +++ +++     
Sbjct: 543 ARNLHGKAILYADRITDAMRKAIDETDRRRAKQIEHNLEQGITPKGIDKRVDDILQSGDY 602

Query: 739 EDAATTNISIDAQQLS------------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           +   +   S  +++++            +S ++    +K    +M+  A +L FE AA I
Sbjct: 603 KIPGSRGASQRSRKMALVAEAASDFSVTMSSEQILKQIKEREAKMYRLAKDLEFEAAAHI 662

Query: 787 RDEIKRLKSSPY 798
           RDEI RL+    
Sbjct: 663 RDEIHRLQEQLI 674


>gi|283458177|ref|YP_003362794.1| helicase subunit of the DNA excision repair complex [Rothia
           mucilaginosa DY-18]
 gi|283134209|dbj|BAI64974.1| helicase subunit of the DNA excision repair complex [Rothia
           mucilaginosa DY-18]
          Length = 722

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/713 (49%), Positives = 479/713 (67%), Gaps = 47/713 (6%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
              ++ +  F++ + + P+GDQP AIA+L + + + EK  +L+G TG+GK+ T A +IEA
Sbjct: 5   PQINRVVAPFEVVSPFQPAGDQPKAIAELTERVQNGEKDIVLMGATGTGKSATAAWLIEA 64

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +QRP +V+  NK LAAQL +E +   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSI
Sbjct: 65  VQRPTLVLVQNKTLAAQLANELRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSI 124

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           NE+++R+RHSAT SLL R D +VV++VSCIYG+G+ E Y   +V L+ G+ V++ ELL  
Sbjct: 125 NEEVERLRHSATNSLLTRRDVVVVATVSCIYGLGTPEEYVAQMVTLRRGEEVDRDELLRQ 184

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
            V  QY R D+   RGTFRV GD++EI P + E+ A R+  FG++IE I   +PLTG+ I
Sbjct: 185 FVAMQYARNDMDFHRGTFRVRGDTVEIIPMY-EENAIRIEFFGDEIEAIYTLHPLTGEVI 243

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
           R  E + ++  SHY+     +  A+  I++EL+ RL  LE +G+LLEAQRL  R TYDLE
Sbjct: 244 REEEEMYVFPASHYIAGAERMAKAITSIEDELRERLQTLESQGKLLEAQRLRMRTTYDLE 303

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M+E  G C  IENYSR++ GR PG  P  L +Y P+D LL +DESHVT+PQ+  MY GD 
Sbjct: 304 MMEQMGFCNGIENYSRHIDGRAPGSAPNCLLDYFPDDFLLIIDESHVTVPQVGAMYEGDM 363

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK TL E+GFRLPS MDNRPL++EE+      TI +SATPG +EL Q  G  VEQIIRP
Sbjct: 364 SRKRTLVEHGFRLPSAMDNRPLKWEEFLERIGQTIYLSATPGKYELSQADG-YVEQIIRP 422

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP + ++  + Q++D+ +EI +  ++  R+L+T LTKRMAEDLTEYL +  ++V+Y
Sbjct: 423 TGLIDPEIVVKPTKGQIDDLLEEIRVRVERDERVLVTTLTKRMAEDLTEYLLQHGVKVQY 482

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS+V TL R+E++R+LRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSL
Sbjct: 483 LHSDVDTLRRVELLRELRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSL 542

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARNV+ +V +YAD IT S+++AIDET RRRE Q  +N++H I+PQ +++KI +
Sbjct: 543 IQTIGRAARNVSGQVHMYADKITDSMRVAIDETNRRREIQQAYNREHGIDPQPLRKKIAD 602

Query: 732 VIDPILLEDAATTNISIDAQQ--------------------------------------- 752
           + D +  E+  T  +    +                                        
Sbjct: 603 ITDVLAREEEDTRELLQQRKSGKKGARTVSAGAKTGSATSSKIATSTPESEELLARAEAR 662

Query: 753 ------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
                  +   +     ++ + +QM +AA+NL FE AAR+RDE+  LK     
Sbjct: 663 VRADGLAAAPAEDLLDLIEQMNEQMRVAAENLQFELAARLRDELADLKKELRL 715


>gi|296119666|ref|ZP_06838224.1| excinuclease ABC subunit B [Corynebacterium ammoniagenes DSM 20306]
 gi|295967549|gb|EFG80816.1| excinuclease ABC subunit B [Corynebacterium ammoniagenes DSM 20306]
          Length = 695

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/689 (51%), Positives = 483/689 (70%), Gaps = 7/689 (1%)

Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180
            I++      +    +    F++ ++Y P+GDQP AIA+L   ++  E+  +L+G TG+G
Sbjct: 8   PIYSQSEHRPVGEIERTGGKFEVISEYEPAGDQPTAIAELDHRLNEGERDVVLMGATGTG 67

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           K+ T A +IE  QRP +VMAPNK LAAQL +E K   P+NAVEYFVSYYDYYQPEAY+ +
Sbjct: 68  KSATAAWLIEKQQRPTLVMAPNKTLAAQLANELKQLLPNNAVEYFVSYYDYYQPEAYIAQ 127

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           TDTYIEK+SSINE ++R+RHSAT +LL R D +VVSSVSCIYG+G+ +SY    V L I 
Sbjct: 128 TDTYIEKDSSINEDVERLRHSATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVLLHID 187

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           D VE+ +LL  LV  QY+R D+G  RGTFRV GD ++I P++ E+ A R+  FG+DI+ +
Sbjct: 188 DEVERDQLLRLLVDIQYERNDVGFTRGTFRVNGDIVDIIPAY-EERAVRIEFFGDDIDAL 246

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
              +P+TG  +  V+ ++I+  +HYV     +  A++ IKEEL  RL +LE  G+LLEAQ
Sbjct: 247 YYIHPVTGDTLEQVDELRIFPATHYVAGPERMEKAVQAIKEELAERLADLENRGKLLEAQ 306

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
           RL  R  YDLEM+E  G C  IENYSR++ GR PG  P TL +Y PED L  +DESHVT+
Sbjct: 307 RLRMRTEYDLEMIEQVGFCSGIENYSRHMDGRGPGTAPATLMDYFPEDFLTIIDESHVTV 366

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           PQI GM+ GD  RK  L E+GFRLPS +DNRPL F+E+      T+ +SATPG++E+   
Sbjct: 367 PQIGGMFEGDMSRKRNLVEFGFRLPSAVDNRPLTFDEFEQRVGQTVYLSATPGNYEVAAA 426

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
            G  VEQ+IRPTGLVDP V ++  + Q++D+ DE+    ++  R+L+T LTKRMAEDLT+
Sbjct: 427 GGEYVEQVIRPTGLVDPKVTVKPTKGQIDDLIDEVRERTKKNERVLVTTLTKRMAEDLTD 486

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           YL E  IRVRY+HS++ TL+RIE++R LRLG++DVLVGINLLREGLD+PE  LVAILDAD
Sbjct: 487 YLLEHGIRVRYLHSDIDTLQRIELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDAD 546

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
           KEGFLRS TSLIQTIGRAARNV+ +VI+YAD +T+S++ AIDET RRR KQ+ +N++  +
Sbjct: 547 KEGFLRSTTSLIQTIGRAARNVSGEVIMYADKVTESMERAIDETERRRAKQIAYNEEMGL 606

Query: 721 NPQSVKEKIMEVIDPILLEDAATT----NISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
           +PQ +++KI +++D +   +        +I       +++  + ++ +  L +QM  AA 
Sbjct: 607 DPQPLRKKIADILDQVYENEGDGESDPASIVDKPDVSTMAADEVQSLIDDLSQQMAAAAR 666

Query: 777 NLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
            L FE A R+RDEI  LK     +GL D+
Sbjct: 667 ELKFELAGRLRDEIADLKKER--RGLKDA 693


>gi|303257494|ref|ZP_07343506.1| excinuclease ABC subunit B [Burkholderiales bacterium 1_1_47]
 gi|331000242|ref|ZP_08323926.1| excinuclease ABC, B subunit [Parasutterella excrementihominis YIT
           11859]
 gi|302859464|gb|EFL82543.1| excinuclease ABC subunit B [Burkholderiales bacterium 1_1_47]
 gi|329572408|gb|EGG54061.1| excinuclease ABC, B subunit [Parasutterella excrementihominis YIT
           11859]
          Length = 684

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/663 (54%), Positives = 478/663 (72%), Gaps = 3/663 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   +  +GDQP AI +L++GI      Q LLGVTGSGKT+TMA VI     P ++
Sbjct: 9   SPFELHQPFEAAGDQPQAIKELVEGIEDGLTAQTLLGVTGSGKTYTMANVIARTGLPTLI 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLY+E ++FFP+NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++M
Sbjct: 69  MAPNKTLAAQLYAEMRDFFPNNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SA++S+LER D I+V++VS IYGIG  ESY++M + LK+GD +EQ++L+S LV+ QY+
Sbjct: 129 RLSASKSVLERRDVIIVATVSAIYGIGKPESYTEMRLILKVGDKIEQRDLISHLVRIQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG FRV GD+I++FP+   ++A R+ +F ++IE +  F PLTG+  + V+   
Sbjct: 189 RNDMEFTRGKFRVRGDTIDVFPAEHSEMALRIELFDDEIEAMYFFDPLTGKTRQKVDRFA 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  S+YVTPR  +  A++ IK+EL+ +  +  + G+LLEAQR+ +R  +DLEML   G 
Sbjct: 249 IYPTSNYVTPRNDILRAIEAIKDELRDQETKFIESGKLLEAQRIRERTLFDLEMLHEVGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L G  PGEPPPTL +Y+P+D+L+F DESHV + QI GMYRGD  RK TL 
Sbjct: 309 CKGIENYSRHLAGGLPGEPPPTLIDYLPKDALMFFDESHVLLGQIGGMYRGDSARKETLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            YGFRLPS  DNRPLRF+E+       I VSATP  +EL      IVEQ++RPTGLVDP 
Sbjct: 369 TYGFRLPSAKDNRPLRFDEFESKMRRAIFVSATPADYELNHS-SQIVEQVVRPTGLVDPE 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R A TQV+DV  EI     +G RIL+T LTKRMAEDLT++L +  I+VRY+HS++ T
Sbjct: 428 VEVRPATTQVDDVLGEIKERIPKGQRILITTLTKRMAEDLTDFLQDNGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLR G FDVL+GINLLREGLDIPE  L+AILDADKEGFLRS+ SLIQTIGRA
Sbjct: 488 VERVEIIRDLRAGVFDVLIGINLLREGLDIPEVALIAILDADKEGFLRSERSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV  K ILYADTIT S++ A+DET RRREKQ  +N  HNI P+SVK++I ++ID +  
Sbjct: 548 ARNVEGKAILYADTITDSMRRAMDETARRREKQTAYNVAHNITPKSVKKEIRDIIDGVYK 607

Query: 739 EDAATTNISI--DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            D       +        +  K+    +K L  +M   A NL FE+A+ +RD++  ++  
Sbjct: 608 SDNLENEFGLVDGQDYEKMGPKELAREIKRLENEMFEHAKNLEFEKASEVRDKLASIRKQ 667

Query: 797 PYF 799
            + 
Sbjct: 668 VFG 670


>gi|296113147|ref|YP_003627085.1| excinuclease ABC subunit B [Moraxella catarrhalis RH4]
 gi|295920841|gb|ADG61192.1| excinuclease ABC subunit B [Moraxella catarrhalis RH4]
 gi|326560521|gb|EGE10903.1| excinuclease ABC subunit B [Moraxella catarrhalis 7169]
 gi|326564873|gb|EGE15077.1| excinuclease ABC subunit B [Moraxella catarrhalis 12P80B1]
 gi|326565389|gb|EGE15566.1| excinuclease ABC subunit B [Moraxella catarrhalis 103P14B1]
 gi|326570400|gb|EGE20440.1| excinuclease ABC subunit B [Moraxella catarrhalis BC8]
 gi|326573377|gb|EGE23345.1| excinuclease ABC subunit B [Moraxella catarrhalis 101P30B1]
 gi|326577192|gb|EGE27086.1| excinuclease ABC subunit B [Moraxella catarrhalis O35E]
          Length = 704

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/661 (56%), Positives = 482/661 (72%), Gaps = 7/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M TD+ PSGDQP AIA+L+KG+ +  + QLLLGVTGSGKT+TMAKVI    RPAI+MA
Sbjct: 41  FEMVTDFEPSGDQPKAIAELVKGVEADMRGQLLLGVTGSGKTYTMAKVIAECGRPAIIMA 100

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR 
Sbjct: 101 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPASDTFIEKDSAINDHIDQMRL 160

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G  ESY +M++ + +GD V +  ++  LV+ QY+R 
Sbjct: 161 SATRALLERRDAIIVASVSAIYGLGDPESYLKMLLHIVVGDRVHRDAVIKRLVELQYERN 220

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGT+R+ G++++I+P+  E +A R+ MF ++IE+I+ F PLTG+ I++V  I IY
Sbjct: 221 ELDFGRGTYRIRGETLDIYPAESESLAVRIQMFDDEIEKITWFDPLTGKNIKSVPRITIY 280

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  L  A   IKEEL  RL       + +EAQR+++R  YDLEM+   G C 
Sbjct: 281 PKSHYVTPKDKLEAASATIKEELAQRLEYFRANDKFIEAQRIKERTQYDLEMIGQLGYCN 340

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GE PPTLF+YIP D+LLF+DESHVT+PQI  MY+GD  RK TL +Y
Sbjct: 341 GIENYSRHLSGRPAGEAPPTLFDYIPSDALLFIDESHVTVPQIGAMYKGDKSRKETLVQY 400

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRP++FEEW  + P TI VSATP  +ELE+ +  +VEQ++RPTGLVDP +E
Sbjct: 401 GFRLPSAMDNRPMKFEEWEKISPATIFVSATPAQYELEKSEQ-VVEQVVRPTGLVDPILE 459

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EINL      R+L+T LTKRMAEDLT YL E  I+V Y+HS++ T+E
Sbjct: 460 IRPVLTQVDDILGEINLKKSLDERVLITTLTKRMAEDLTSYLKEYGIKVAYLHSDIDTVE 519

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G FDVLVGINLLREGLD+PE  LVAI DADKEGFLRS+ SLIQTIGRAAR
Sbjct: 520 RMKIIHELRTGIFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERSLIQTIGRAAR 579

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +VN K ILYADTIT S+Q AIDET RRR KQ+  N++H I P+S    I + ID    E 
Sbjct: 580 HVNGKAILYADTITPSMQKAIDETERRRAKQIAFNQEHGITPKSASRAITDKIDTGDDET 639

Query: 741 AA------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +       +  ++   + +  S K     +  L KQM   +  L FEEAA++RD +  LK
Sbjct: 640 SEVVQIVLSQALAGVDENILHSPKLLAKEIARLEKQMQALSRELKFEEAAKVRDTVIALK 699

Query: 795 S 795
            
Sbjct: 700 E 700


>gi|313113936|ref|ZP_07799493.1| excinuclease ABC subunit B [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310623731|gb|EFQ07129.1| excinuclease ABC subunit B [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 685

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 457/657 (69%), Gaps = 7/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  L+KG+   ++ Q LLGVTGSGKTFTMA VI    RP +V+A
Sbjct: 6   FELVSSYQPTGDQPQAIETLVKGVERGDRCQTLLGVTGSGKTFTMANVIAKCNRPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF++FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++IDR+RH
Sbjct: 66  HNKTLAAQLCTEFRSFFPNNAVEYFVSYYDYYQPEAYIPSTDTYIEKDSAINDEIDRLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +G    Y  M++ L+ G  +E+ EL   LV  QY+R 
Sbjct: 126 SATAALSERRDVIIVASVSCIYSLGDPIDYRSMVISLRPGMQMERDELCQKLVTLQYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  +R  FRV GD ++I+ +++ ++A RV  FG++I+ I+EF PLTG K   V+ + I+
Sbjct: 186 DVNFVRNKFRVHGDIVDIYLAYMSELAIRVEFFGDEIDRITEFNPLTGAKQNVVKHVAIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+        A++ I+ E   ++ +   EG+L+EAQR+ QR  YD+EML   G C+
Sbjct: 246 PASHYIVSAEKKAAALEKIRAECDAQVKQFTAEGKLIEAQRIAQRTNYDMEMLNEVGMCK 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  L+GR PG  P TL +Y P+D LLFVDESHVT+PQ+  MY GD+ RK TL EY
Sbjct: 306 GIENYSAVLSGRAPGSMPTTLLDYFPDDFLLFVDESHVTLPQVRAMYGGDYARKKTLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE        I VSATPG +E +     + +Q+IRPTGL+DP + 
Sbjct: 366 GFRLPSAFDNRPLKFEEVESKLNQMIFVSATPGDYERQNSTQ-VAQQVIRPTGLLDPLIS 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV D+  EIN   Q+  R+L+T LTK+MAEDLT+YL E+ I+V+YMH EV T E
Sbjct: 425 VRPVEGQVVDLLGEINTRIQRHERVLVTTLTKKMAEDLTDYLTEQGIKVKYMHHEVDTFE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII+DLRLG  DV+VGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 485 RMEIIKDLRLGSIDVVVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S+  AI ET RRR  Q+ +NK+H I P+++ + I + I+     +
Sbjct: 545 NAEGLVIMYADIVTDSMDRAITETERRRAIQMAYNKEHGIVPKTIVKAIADSIEISDKAE 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            A  N         + + + +A ++ L ++M  AA  L FE AA +RD+I RL+   
Sbjct: 605 NAKLNT------RRMGRMEREAAIERLTREMKEAAKLLEFEHAAFLRDQIDRLRRGE 655


>gi|294812003|ref|ZP_06770646.1| UvrABC system protein B [Streptomyces clavuligerus ATCC 27064]
 gi|326440272|ref|ZP_08215006.1| excinuclease ABC subunit B [Streptomyces clavuligerus ATCC 27064]
 gi|294324602|gb|EFG06245.1| UvrABC system protein B [Streptomyces clavuligerus ATCC 27064]
          Length = 719

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/711 (50%), Positives = 481/711 (67%), Gaps = 44/711 (6%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++   + +  F++ + + PSGDQP AIA L + I + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVSQIERTVAPFEVVSPFQPSGDQPTAIADLERRIRAGEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IERLQRPTLVMAPNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +V L++G+ +++ EL
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVPLRVGEEIDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG
Sbjct: 182 LRRFVDIQYTRNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + +   +++ ++  SHYV     L  A+  I+ EL+ RL EL+K+G+LLE+QRL  R TY
Sbjct: 241 EILSEDQSLHVFPASHYVAGPERLEKAVDGIEAELEQRLAELDKQGKLLESQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   GSC  IENYS +  GR PG PP TL +Y PED LL +DESHVT+PQI  MY 
Sbjct: 301 DIEMMRQIGSCSGIENYSMHFDGREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG++EL +  G  VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLKWEEFTERIGQTVYLSATPGAYELSRGDG-FVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI +  ++  R+L+T LTK+MAEDLT+Y  E  IR
Sbjct: 420 IRPTGLVDPEVVVKPTEGQIDDLVHEIRVRTERDERVLVTTLTKKMAEDLTDYFLELGIR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +N +  I+PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQIAYNTEKGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI------------------------------------------ 746
           I +++  I  E+  T  +                                          
Sbjct: 600 INDIVATIAREEVDTEELLGSDYRKPKERSGKAGKAPVPALGGKGAAQGRGRAGGKGERA 659

Query: 747 SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
              A        +    ++ + ++M  AA +L FE AAR+RDE+  LK   
Sbjct: 660 GTGADTSGRPATELAGIIEEMTERMRAAAADLQFEIAARLRDEVGELKKEL 710


>gi|213966506|ref|ZP_03394676.1| excinuclease ABC, B subunit [Corynebacterium amycolatum SK46]
 gi|213950856|gb|EEB62268.1| excinuclease ABC, B subunit [Corynebacterium amycolatum SK46]
          Length = 710

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/694 (50%), Positives = 473/694 (68%), Gaps = 21/694 (3%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
               +    +    F++ +++ PSGDQP AIA+L + +   E+  +L+G TG+GK+ T A
Sbjct: 14  EFRPVGEVERAEGTFEVISEFEPSGDQPQAIAELSERLDRGEREVVLMGATGTGKSATAA 73

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            +IE +QRP +VMAPNK LAAQL +E ++  P+NAVEYFVSYYDYYQPEAY+ +TDTYIE
Sbjct: 74  WLIEKVQRPTLVMAPNKTLAAQLANELRSLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIE 133

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+SSINE ++R+RHSAT +LL R D +VVSSVSCIYG+G+ +SY    V LK G+ V++ 
Sbjct: 134 KDSSINEDVERLRHSATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVWLKEGEEVDRD 193

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           + L  LV  QY R DI   RGTFRV GD ++I P++ E+ A RV  FG++I+ +    P+
Sbjct: 194 QFLRLLVDIQYARNDIAFTRGTFRVKGDVVDIIPAY-EEKAVRVEFFGDEIDSLYYLNPV 252

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG  I  V  ++I+  +HYV     +  A+  IK EL  RL +LE  G+LLEAQRL  R 
Sbjct: 253 TGDVIDQVPELRIFPATHYVAGPERMERAVADIKAELAERLADLENRGKLLEAQRLRMRT 312

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
            YDLEM+E  G C  IENYSR++ GR PG  P TL +Y PED L  +DESHVT+PQI GM
Sbjct: 313 EYDLEMIEQVGFCSGIENYSRHIDGRAPGSAPATLIDYFPEDFLTIIDESHVTVPQIGGM 372

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           + GD  RK  L ++GFRLPS +DNRPL F+E++      + +SATPG +ELE+  G  VE
Sbjct: 373 FEGDASRKRNLVDFGFRLPSALDNRPLTFDEFDARVGQVVFMSATPGDYELEKAGGEYVE 432

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q+IRPTGLVDP + ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  
Sbjct: 433 QVIRPTGLVDPKIVVKPTEGQIDDLIGEIRKRTERDERVLVTTLTKKMAEDLTDYLLENG 492

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           ++VRYMHS+V TL+R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLR
Sbjct: 493 VQVRYMHSDVDTLKRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLR 552

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S+ SLIQTIGRAARNV+ +V +YAD IT S++ AIDET RRREKQ+ +N +H I+PQ ++
Sbjct: 553 SERSLIQTIGRAARNVSGEVHMYADKITDSMRFAIDETERRREKQIAYNTEHGIDPQPLR 612

Query: 727 EKIMEVIDPIL------------------LEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
           +KI +++D +                   L  A  +  +  A    + + + +A +  L 
Sbjct: 613 KKIADILDQVYDNADTDYEGKTGAAADALLSRADGSGAADGASGKQMPRAELEALIADLS 672

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGL 802
           +QM  AA  L FE A R+RDEI  LK     +G+
Sbjct: 673 EQMAAAARELKFELAGRLRDEIFDLKKE--LKGM 704


>gi|50842290|ref|YP_055517.1| excinuclease ABC subunit B [Propionibacterium acnes KPA171202]
 gi|289426306|ref|ZP_06428052.1| excinuclease ABC, B subunit [Propionibacterium acnes SK187]
 gi|81692477|sp|Q6A9K7|UVRB_PROAC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|50839892|gb|AAT82559.1| excinuclease ABC subunit B [Propionibacterium acnes KPA171202]
 gi|289153471|gb|EFD02186.1| excinuclease ABC, B subunit [Propionibacterium acnes SK187]
 gi|313813162|gb|EFS50876.1| excinuclease ABC subunit B [Propionibacterium acnes HL025PA1]
 gi|315106997|gb|EFT78973.1| excinuclease ABC subunit B [Propionibacterium acnes HL030PA1]
          Length = 701

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/694 (51%), Positives = 482/694 (69%), Gaps = 27/694 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + + ++ +  F + +++ PSGDQP AIA+L K ++S E+  +LLG TG+GKT T+A +
Sbjct: 2   RPVTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
            E +QRP +VM PNK LAAQ   E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+
Sbjct: 62  AERLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+NE+++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y   ++ L++G   ++ EL
Sbjct: 122 SSLNEEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R DI   RGTFRV GD++EIFP + E+ A RV  FG++IE ++  +PLTG
Sbjct: 182 LRDLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I   E + ++  +HYV     +  A+  I++EL+ RL  LE++G+LLEAQRL  R TY
Sbjct: 241 EIISEDEQVYVFPATHYVAGPERMERAIASIQQELEERLAVLERDGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM++  G+C  IENYSR++ GR PG  P  L +Y PED +L +DESHVT+PQI GMY 
Sbjct: 301 DIEMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS MDNRPL+F+E+      T+ +SATPGS+E E+  G +VEQI
Sbjct: 361 GDMSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERAHG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++  R Q++D+  EI     +G  +L+T LTK+MAEDLT+YL E  IR
Sbjct: 420 IRPTGLVDPEIIVKPTRGQIDDLMGEIRTRVDRGDGVLVTTLTKKMAEDLTDYLMEHGIR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            RY+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+
Sbjct: 480 TRYLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQT+GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++K
Sbjct: 540 RSLIQTVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISID-------------------------AQQLSLSKKKGKAH 763
           I ++ + +  E A T  +                                 ++++     
Sbjct: 600 IGDITEMLAREGADTDELVEKFNYGKGQRGYNSMITDEQRAAQGRRLDVSKMAEEDLGKL 659

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +  L  +M  AA  L FE AAR+RDEI  LK   
Sbjct: 660 IVDLTTEMRSAAGELKFEVAARLRDEIADLKKEL 693


>gi|313833928|gb|EFS71642.1| excinuclease ABC subunit B [Propionibacterium acnes HL056PA1]
          Length = 701

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/694 (51%), Positives = 482/694 (69%), Gaps = 27/694 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + + ++ +  F + +++ PSGDQP AIA+L K ++S E+  +LLG TG+GKT T+A +
Sbjct: 2   RPVTDITRRVAPFHVVSEFQPSGDQPQAIAELEKRVNSGEQDVVLLGATGTGKTATVAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
            E +QRP +VM PNK LAAQ   E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+
Sbjct: 62  AERLQRPMLVMQPNKTLAAQFAQELRTFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+N++++R+RHSAT SLL R D IVVS+VS IYG+G+ + Y   ++ L++G   ++ EL
Sbjct: 122 SSLNKEVERLRHSATNSLLTRRDVIVVSTVSAIYGLGTPQEYVDRMIPLEVGQEWDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R DI   RGTFRV GD++EIFP + E+ A RV  FG++IE ++  +PLTG
Sbjct: 182 LRDLVTNQYVRNDISGERGTFRVRGDTLEIFPVY-EENALRVEFFGDEIEALTTMHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I   E + ++  +HYV     +  A+  I++EL+ RL  LE++G+LLEAQRL  R TY
Sbjct: 241 EIISEDEQVYVFPATHYVAGPERMERAIASIQQELEERLAVLERDGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM++  G+C  IENYSR++ GR PG  P  L +Y PED +L +DESHVT+PQI GMY 
Sbjct: 301 DIEMMQQVGACAGIENYSRHIDGRAPGSAPNCLLDYFPEDFVLVIDESHVTVPQIGGMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS MDNRPL+F+E+      T+ +SATPGS+E E+  G +VEQI
Sbjct: 361 GDMSRKRTLVEHGFRLPSAMDNRPLKFDEFTQRIGQTVYLSATPGSYETERAHG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++  R Q++D+  EI     +G R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 420 IRPTGLVDPEIIVKPTRGQIDDLMGEIRTRVDRGDRVLVTTLTKKMAEDLTDYLMEHGIR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            RY+HSE+ TL+RIE++++LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+
Sbjct: 480 TRYLHSEIDTLKRIELLKELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSE 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQ +GRAARNVN +VI+YAD IT S+Q+AIDET RRR+ Q+ +NK+H I+PQ +++K
Sbjct: 540 RSLIQPVGRAARNVNGQVIMYADQITDSMQVAIDETNRRRDIQMAYNKEHGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISID-------------------------AQQLSLSKKKGKAH 763
           I ++ + +  E A T  +                                 ++++     
Sbjct: 600 IGDITEMLAREGADTDELVEKFNYGKGHRGYNSMITDEQRAAQGRRLDVSKMAEEDLGKL 659

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +  L  +M  AA  L FE AAR+RDEI  LK   
Sbjct: 660 IVDLTTEMRSAAGELKFEVAARLRDEIADLKKEL 693


>gi|282899442|ref|ZP_06307409.1| Excinuclease ABC, B subunit [Cylindrospermopsis raciborskii CS-505]
 gi|281195706|gb|EFA70636.1| Excinuclease ABC, B subunit [Cylindrospermopsis raciborskii CS-505]
          Length = 665

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/667 (52%), Positives = 466/667 (69%), Gaps = 6/667 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +Q  + P+GDQP AIA+++K I  +++ Q LLG TG+GKTF++A VIE + +P +
Sbjct: 1   MAQFTLQAPFSPTGDQPQAIAEMIKNIEGKQRYQTLLGATGTGKTFSIAAVIEKVGKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFPHNAVEYFVSYYDYYQPEAY+P TDTYIEK S+IN +ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPHNAVEYFVSYYDYYQPEAYIPVTDTYIEKTSAINSEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  + L+IG  ++ +E++  L+  QY
Sbjct: 121 LRHSATRSLFEREDVIVVTSISCIYGLGMPAEYLKAAITLEIGMEIDPREVIRKLISVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI I RG FRV GD IEI P++ ED   RV  FG+DI+ I    P+ G+ + ++E I
Sbjct: 181 SRNDIEIGRGKFRVRGDVIEIGPAY-EDRIVRVEFFGDDIDAIRYVDPVKGEIMSSLERI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP+  L  A   I +ELK   ++LE+ G+L+EAQR++QR  YD+E+L   G
Sbjct: 240 SIYPARHFVTPKERLEIACLEISDELKAYKLKLEELGKLVEAQRIDQRTRYDIELLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSRYL GR  GEPP  L +Y P+D LL +DESHVT+PQI GMY GD  RK  L
Sbjct: 300 YCNGVENYSRYLAGRQAGEPPECLIDYFPQDWLLVIDESHVTVPQIRGMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+       I VSATPG WE+E     IVEQIIRPTG++DP
Sbjct: 360 IDHGFRLPSAGDNRPLKAEEFWQKVSQCIFVSATPGDWEIEVSGKNIVEQIIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    QV+++  EI+       R+L+T LTKRMAEDLTEYL  R++RVRY+HSE+ 
Sbjct: 420 QIYVRPTAGQVDNLLGEIHERVDNNERVLITTLTKRMAEDLTEYLENRSVRVRYLHSEIN 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           +++RIEI++DLR G FDVLVG+NLLREGLD+PE  LV I+DADKEGFLR++ SLIQTIGR
Sbjct: 480 SIQRIEILQDLRNGSFDVLVGVNLLREGLDLPEVSLVVIMDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK----IMEVI 733
           AAR+++ KVI+YAD +T S+  AI+ET RRR  Q+ +NK HNI PQ V +K    I+  +
Sbjct: 540 AARHLHGKVIMYADNLTGSMIKAIEETDRRRGIQMAYNKIHNITPQPVFKKSGNSILSFL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           D     +A    + +D Q   L+ ++    + +L KQMH AA  + FE AA++RD IK L
Sbjct: 600 DVSRRLNANDLKL-VDEQWHDLNLEEIPQLITTLEKQMHDAAKKMEFEHAAKLRDRIKSL 658

Query: 794 KSSPYFQ 800
           +     +
Sbjct: 659 RDKILGK 665


>gi|294495135|ref|YP_003541628.1| excinuclease ABC subunit B [Methanohalophilus mahii DSM 5219]
 gi|292666134|gb|ADE35983.1| Excinuclease ABC subunit B [Methanohalophilus mahii DSM 5219]
          Length = 658

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/665 (55%), Positives = 481/665 (72%), Gaps = 10/665 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P GDQP AI  L  GI+   + Q LLGVTGSGKTFTMA VI+ +QRP +
Sbjct: 1   MPEFELVSNYSPRGDQPQAIDNLSNGINGGFRHQTLLGVTGSGKTFTMANVIQNVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL+SEF++FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+SSINE+IDR
Sbjct: 61  VIAHNKTLAAQLFSEFRDFFPDNAVEYFVSYYDYYQPEAYLPTTDTYIEKDSSINEEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT+SL+ER D IVVSSVSCIY +GS + + +M + LK GD V++  +   LV  QY
Sbjct: 121 LRLSATKSLMERRDVIVVSSVSCIYNLGSPKEWQEMSLFLKPGDEVDRSWIFGKLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE-- 375
           +R D+   +GTFR  GD++EIFP+  ++VA RV MFG++I+ IS F PLTG+ +R VE  
Sbjct: 181 ERNDVEFTQGTFRARGDTVEIFPA-QDNVAVRVEMFGDEIDRISYFEPLTGKVVREVEDD 239

Query: 376 -TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
             + IY   H+V P+  ++ A+  I+EELK  + E EK+G+LLEAQR+ QR  +D+EM+E
Sbjct: 240 MQVVIYPAKHFVMPQSQIDRALVSIEEELKDTVAEFEKQGQLLEAQRIMQRTRFDIEMIE 299

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSR+  GR PGE P +L ++ P+D LL +DESHVTIPQI GM+ GD  RK
Sbjct: 300 ELGYCSGIENYSRHFDGRKPGEAPSSLLDFFPDDYLLIIDESHVTIPQIGGMHNGDRARK 359

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +L EYGFRLPS  DNRPL + E+       + VSATP  +EL      +VEQIIRPTGL
Sbjct: 360 KSLIEYGFRLPSAFDNRPLNYREFEERINQAVYVSATPADYELGLSDQ-VVEQIIRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           VDPPV++R    Q++D+ +E+   +++G R L+T LTK+MAEDLT+YL E  IRVRYMHS
Sbjct: 419 VDPPVQVRPVANQIDDLMEEVRKVSERGYRTLVTTLTKKMAEDLTDYLLEMGIRVRYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ TLER EI+R+LR G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT
Sbjct: 479 DIDTLERAEIVRELRKGTFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRA+RNV++  I+YAD IT S+  A+ E  RRR  QLE N+KHNI P S+ ++I   I 
Sbjct: 539 IGRASRNVDAYAIMYADRITGSMSRAMSEMERRRNIQLEFNRKHNITPTSIMKEIQREI- 597

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            + +E+ +T    +D   + LSK +  + L  L  +MH AA NL FEEAAR+RD I+ ++
Sbjct: 598 -VEVEEVSTPAAGVD---MGLSKMEANSMLIDLEAEMHEAARNLEFEEAARLRDAIREMR 653

Query: 795 SSPYF 799
            +   
Sbjct: 654 ETYSL 658


>gi|44455|emb|CAA31090.1| unnamed protein product [Micrococcus luteus]
          Length = 709

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/700 (49%), Positives = 474/700 (67%), Gaps = 36/700 (5%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
              ++ +  F++ + Y PSGDQP AIA+L + + + EK  +L+G TG+GK+ T A ++E 
Sbjct: 5   QKINRVVAPFEVISPYQPSGDQPKAIAELAERVEAGEKDVVLMGATGTGKSATTAWLVER 64

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +QRP +VM  NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSI
Sbjct: 65  LQRPTLVMVQNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSI 124

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           NE+++R+RHSAT +LL R D IVV++VSCIYG+G+ E Y + +V L+ G  +++  LL  
Sbjct: 125 NEEVERLRHSATNALLTRRDVIVVATVSCIYGLGTPEEYIEQMVTLRRGAEMDRDVLLRR 184

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
            V+ QY R D+   RGTFRV GD++EI P + E++A R+  FG++IE I   +PLTGQ +
Sbjct: 185 FVQMQYVRNDVDFHRGTFRVRGDTVEIIPMY-EELAVRIEFFGDEIESIQTLHPLTGQVV 243

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
           R  E + I+  SHYV     +  A+  I++EL+ RL ELE + +LLEAQRL  R TYDLE
Sbjct: 244 REEEEMYIFPASHYVAGDERMGRAITTIEDELRERLQELESQDKLLEAQRLRMRTTYDLE 303

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M++  G C  IENYSR++ GR  G  P  L +Y P+D LL VDESHVTIPQ   MY GD 
Sbjct: 304 MMQQMGYCNGIENYSRHIDGRPAGSAPHCLLDYFPDDFLLVVDESHVTIPQYGAMYEGDM 363

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK TL E+GFRLPS MDNRP++++E+      T+ +SATPG++EL Q  G  VEQIIRP
Sbjct: 364 SRKRTLLEHGFRLPSAMDNRPVKWDEFLERIGQTVYLSATPGAYELGQADG-YVEQIIRP 422

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGLVDP V ++    Q++D+ ++I +   +  R+L+T LTKRMAEDLT+YL E  ++V Y
Sbjct: 423 TGLVDPQVVVKPTEGQIDDLLEQIRVRTAKDERVLVTTLTKRMAEDLTDYLLEAGVKVEY 482

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS+V TL R+E++R+LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSL
Sbjct: 483 LHSDVDTLRRVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSL 542

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARNV+ +V +YA  +T S++ AI+ET RRR  Q+ +N++H I+PQ ++++I +
Sbjct: 543 IQTIGRAARNVSGEVHMYAGNVTDSMRRAIEETERRRAVQIAYNEEHGIDPQPLRKRIAD 602

Query: 732 VIDPILLEDAATTN----------------------------------ISIDAQQLSLSK 757
           + D +  EDA T +                                   +      SL  
Sbjct: 603 ITDQLAREDADTADFLKGMGGVKSGFDFGMGHRGLSSLDRAPATGEGAAAPAVDPASLPA 662

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           K     ++ + +QMH AA +L FE AAR+RDE+  LK   
Sbjct: 663 KDLADLIEQMSQQMHQAAADLQFELAARLRDEVGELKKEL 702


>gi|172036961|ref|YP_001803462.1| excinuclease ABC subunit B [Cyanothece sp. ATCC 51142]
 gi|171698415|gb|ACB51396.1| excinuclease ABC subunit B [Cyanothece sp. ATCC 51142]
          Length = 670

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/664 (52%), Positives = 464/664 (69%), Gaps = 4/664 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++Q  + P+GDQP+AI QL + +    + Q LLG TG+GKTF++A VIE + +P +V
Sbjct: 5   PIFELQAPFKPTGDQPSAIKQLTQSLQENNRFQTLLGATGTGKTFSIAAVIENIGKPTLV 64

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID +
Sbjct: 65  LAHNKTLAAQLCNELRQFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKSASINDEIDML 124

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSATRSL ER D IVV+S+SCIYG+G    Y +  V L++G  V+Q++LL  LV  QY 
Sbjct: 125 RHSATRSLFERKDVIVVASISCIYGLGMPAEYLKASVPLEVGKEVDQRQLLRDLVTVQYS 184

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ + +++ I 
Sbjct: 185 RNDLDLQRGRFRVKGDVLEIVPAY-EDRVVRVEFFGDEIDAIRYLDPVTGEILNSLKNIN 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY   H+VTP   L  A + I+ ELK +++ LEK G+LLEAQR++QR  YDLE+L   G 
Sbjct: 244 IYPARHFVTPEEQLEAACEAIEIELKEQVLNLEKAGKLLEAQRIDQRTRYDLELLREVGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  +ENYSR+L GR PG PP  L +Y P+D LL VDESHVT+PQI GMY GD  RK  L 
Sbjct: 304 CNGVENYSRHLAGRKPGSPPECLVDYFPKDWLLIVDESHVTVPQIRGMYNGDQARKKVLI 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS  DNRPL+ EE+       I VSATPG+WE+EQ +  ++EQIIRPTG++DP 
Sbjct: 364 DHGFRLPSAADNRPLKSEEFWDKVNQCIFVSATPGNWEIEQSEDRVIEQIIRPTGVLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R    QV+D+  EI    ++  R+L+T LTKRMAEDL+EY  ER+++V+Y+HSE+K+
Sbjct: 424 IFVRPTEGQVDDLLGEIKQRVKRKERVLITTLTKRMAEDLSEYFQERDVKVQYLHSEIKS 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ERIEI++ LR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 484 IERIEILQALRNGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAEKSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           AR+VN + ILY D +T S+  AI+ET RRR  Q+ +NK+HNI PQ + ++    I   L 
Sbjct: 544 ARHVNGQAILYGDNLTDSMIKAIEETDRRRNIQMAYNKRHNITPQPIIKRSSNAILSFLD 603

Query: 739 EDAATTNISIDA---QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    ++    Q   L   K    ++ L +QM  +A NL FEEAA+ RD+IK L+ 
Sbjct: 604 ISRRLNAQQLEEVYTQADDLPLDKVPELIQQLEQQMQESAKNLEFEEAAKYRDKIKHLRD 663

Query: 796 SPYF 799
               
Sbjct: 664 KMLG 667


>gi|326565749|gb|EGE15911.1| excinuclease ABC subunit B [Moraxella catarrhalis BC1]
 gi|326571086|gb|EGE21110.1| excinuclease ABC subunit B [Moraxella catarrhalis BC7]
 gi|326575727|gb|EGE25650.1| excinuclease ABC subunit B [Moraxella catarrhalis CO72]
          Length = 704

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/661 (56%), Positives = 482/661 (72%), Gaps = 7/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M TD+ PSGDQP AIA+L+KG+ +  + QLLLGVTGSGKT+TMAKVI    RPAI+MA
Sbjct: 41  FEMVTDFEPSGDQPKAIAELVKGVEADMRGQLLLGVTGSGKTYTMAKVIAECGRPAIIMA 100

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR 
Sbjct: 101 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPASDTFIEKDSAINDHIDQMRL 160

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G  ESY +M++ + +GD V +  ++  LV+ QY+R 
Sbjct: 161 SATRALLERRDAIIVASVSAIYGLGDPESYLKMLLHIVVGDRVHRDAVIKRLVELQYERN 220

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGT+R+ G++++I+P+  E +A R+ MF ++IE+I+ F PLTG+ I++V  I IY
Sbjct: 221 ELDFGRGTYRIRGETLDIYPAESESLAVRIQMFDDEIEKITWFDPLTGKNIKSVPRITIY 280

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP+  L  A   IKEEL  RL       + +EAQR+++R  YDLEM+   G C 
Sbjct: 281 PKSHYVTPKDKLEAASATIKEELAQRLEYFRANDKFIEAQRIKERTQYDLEMIGQLGYCN 340

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  GE PPTLF+YIP D+LLF+DESHVT+PQI  MY+GD  RK TL +Y
Sbjct: 341 GIENYSRHLSGRPAGEAPPTLFDYIPSDALLFIDESHVTVPQIGAMYKGDKSRKETLVQY 400

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRP++FEEW  + P TI VSATP  +ELE+ +  +VEQ++RPTGLVDP +E
Sbjct: 401 GFRLPSAMDNRPMKFEEWEKISPATIFVSATPAQYELEKSEQ-VVEQVVRPTGLVDPILE 459

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+D+  EINL      R+L+T LTKRMAEDLT YL E  I+V Y+HS++ T+E
Sbjct: 460 IRPVLTQVDDILSEINLKKSLDERVLITTLTKRMAEDLTSYLKEYGIKVAYLHSDIDTVE 519

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G FDVLVGINLLREGLD+PE  LVAI DADKEGFLRS+ SLIQTIGRAAR
Sbjct: 520 RMKIIHELRTGIFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERSLIQTIGRAAR 579

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +VN K ILYADTIT S+Q AIDET RRR KQ+  N++H I P+S    I + ID    E 
Sbjct: 580 HVNGKAILYADTITPSMQKAIDETERRRAKQIAFNQEHGITPKSASRAITDKIDTGDDET 639

Query: 741 AA------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +       +  ++   + +  S K     +  L KQM   +  L FEEAA++RD +  LK
Sbjct: 640 SEVVQIVLSQALAGVDENILHSPKLLAKEIARLEKQMQALSRELKFEEAAKVRDTVIALK 699

Query: 795 S 795
            
Sbjct: 700 E 700


>gi|303247051|ref|ZP_07333326.1| excinuclease ABC, B subunit [Desulfovibrio fructosovorans JJ]
 gi|302491477|gb|EFL51362.1| excinuclease ABC, B subunit [Desulfovibrio fructosovorans JJ]
          Length = 679

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/678 (52%), Positives = 467/678 (68%), Gaps = 16/678 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ++++Y P GDQP AI  L   +      Q+LLG TG+GKTFTMA+V+  + RPA+VM
Sbjct: 2   LFQLESEYSPQGDQPGAIEALAANLSQGVPSQVLLGATGTGKTFTMAQVVARLNRPALVM 61

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLYSEFK  FP+NAVEYFVSYYDYYQPEAY+PRTDTYIEK++SIN+ ID++R
Sbjct: 62  APNKTLAAQLYSEFKGLFPNNAVEYFVSYYDYYQPEAYLPRTDTYIEKDASINDDIDKLR 121

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT SLL R D ++V+SVSCIYG+GS + Y +M++ L++G     + ++S LV+ QY+R
Sbjct: 122 HAATHSLLTRRDVLIVASVSCIYGLGSRDYYERMVLSLEVGQKTGMEAVISRLVEIQYER 181

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RG FRV GD IE+ P++  + A R+  F +++E I E  PLTG+ + +++   I
Sbjct: 182 NDYDFHRGVFRVRGDVIELIPAYSRERAMRLEFFDDELESILETDPLTGEVLGSMQKAII 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SHYV+ R  LN A+  I+EEL++RL EL     LL AQRLE R   DLEM+E  G C
Sbjct: 242 FPASHYVSDRDNLNRAVSDIREELRLRLTELRAANDLLAAQRLEMRCMQDLEMIEELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L GR  GEPP TL +Y PED +LFVDESH+T+PQI GMY GD  RK TL +
Sbjct: 302 NGIENYSRHLDGRKAGEPPYTLLDYFPEDFILFVDESHITVPQIGGMYAGDRSRKQTLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL FEE+ C     + VSATPG WE+ + +G++VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPSALDNRPLNFEEFLCRIGQAVYVSATPGDWEVNRSEGVVVEQIIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + QV+D+  E  + A  G R+L+T LTKRMAE+L +Y     +R RY+HS++ TL
Sbjct: 422 EVRPTKGQVDDLMAECRVRADAGERVLVTTLTKRMAEELNQYFNSMGLRSRYLHSDIDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+ II+ LR G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT GRAA
Sbjct: 482 ERVAIIKALRQGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTRSLIQTFGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-- 737
           RNV  +VILYADT T S+Q A+DET RRREKQ   N++  I P ++ + +  V+D +   
Sbjct: 542 RNVGGRVILYADTETGSMQAAMDETARRREKQEAFNREAGITPSTIIKAMDSVLDSLYGQ 601

Query: 738 --------------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
                             A +     +    +SKK  +  ++ L ++M  AA  L FE+A
Sbjct: 602 GADAAAAASVAAPGRSSRAASVREEASAYGGMSKKALEKKIRMLEREMREAAKALEFEKA 661

Query: 784 ARIRDEIKRLKSSPYFQG 801
           A +RD++  L+      G
Sbjct: 662 AALRDQVAALRERLLEMG 679


>gi|241896136|ref|ZP_04783432.1| excision endonuclease subunit UvrB [Weissella paramesenteroides
           ATCC 33313]
 gi|241870650|gb|EER74401.1| excision endonuclease subunit UvrB [Weissella paramesenteroides
           ATCC 33313]
          Length = 671

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/657 (51%), Positives = 469/657 (71%), Gaps = 3/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + Y P+GDQP AI +L+ G+ +  K Q+LLG TG+GKTFT++ VI    +P +V++
Sbjct: 10  YELVSKYQPTGDQPEAIRKLVNGLKNGIKEQILLGATGTGKTFTISNVIAQTNKPVLVLS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++R+
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRN 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL RND IVV+SVS I+G+G+ E Y   ++ +++GD +E+ +L+  L+  Q++R 
Sbjct: 130 SATASLLARNDTIVVASVSSIFGLGNPEQYHDHVINVRVGDILERNDLMHRLIDIQFQRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +E+FP+  +  A R+  FG++++ I E   LTG+    ++   I+
Sbjct: 190 DIDFQRGRFRVRGDVLEVFPASSDAKALRIEFFGDEVDRIREIDSLTGEITAELDLATIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T     + A+K I+ EL  +L +LEK+G+LLEAQRL+QR  YD+EM+   G   
Sbjct: 250 PATHFMTNDAIRDRALKTIQAELDDQLQKLEKDGKLLEAQRLKQRTEYDIEMIREMGFTT 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGEPP TL ++ P+D ++ VDESHVT+PQ+ GMY+GD  RK TL  Y
Sbjct: 310 GIENYSRHMDGRQPGEPPFTLLDFFPDDFIIIVDESHVTMPQVRGMYKGDRARKETLINY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPLR EE+       I +SATPG +E ++  +  + +QIIRPTGL+DP +
Sbjct: 370 GFRLPSALDNRPLRIEEFEKHVNQIIYMSATPGDYENDRVPETDVAQQIIRPTGLLDPEI 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EIN       R+ +T LTK+MAEDLT+YL +  I+V+Y+HS++KTL
Sbjct: 430 EVRPVMGQIDDLIGEINKRVDNEERVFVTTLTKKMAEDLTDYLEDVGIKVKYLHSDIKTL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIRDLRLGKFDVLVGINLLREG+D+PE  L+AILDADKEGFLR+  SLIQTIGRAA
Sbjct: 490 ERTEIIRDLRLGKFDVLVGINLLREGIDVPEVSLIAILDADKEGFLRNTRSLIQTIGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VI+YAD++T S+Q A+DET+RRR  Q+++N+ HNI P ++K+ I ++I      
Sbjct: 550 RNENGHVIMYADSVTASMQAAMDETSRRRHIQIQYNEDHNITPHTIKKAIRDLISASHEV 609

Query: 740 DAATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           D  +T      D     +++    A + +L  QM  AA  L+FE+AA +RD +  LK
Sbjct: 610 DNQSTEKGSFTDVAFKDMARDDQNAMIANLEDQMRSAAKRLDFEDAANLRDAVMELK 666


>gi|317471948|ref|ZP_07931281.1| excinuclease ABC [Anaerostipes sp. 3_2_56FAA]
 gi|316900585|gb|EFV22566.1| excinuclease ABC [Anaerostipes sp. 3_2_56FAA]
          Length = 661

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/657 (53%), Positives = 480/657 (73%), Gaps = 4/657 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +++ P+GDQP AI QL+ G     + + LLGVTGSGKTFTMA VI+ + +P +
Sbjct: 1   MDHFELVSEFEPTGDQPEAIRQLVSGFKQGNQFETLLGVTGSGKTFTMANVIQELNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAYVP TDTYIEK+SS+N++ID+
Sbjct: 61  IIAHNKTLAAQLYSEFKAFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSVNDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L+ER D IVVSSVSCIYGIGS E+YS+M++ L+ G   ++ +++  L+  QY
Sbjct: 121 LRHSATAALIERKDVIVVSSVSCIYGIGSKENYSEMMISLRPGMEKDRDQVIDELINIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RGTFRV GD +EI P    + A RV  FG++I+ I EF  LTG+  R++  +
Sbjct: 181 VRNELDFKRGTFRVKGDVLEILPVSTFEEAVRVEFFGDEIDRIVEFDVLTGEVKRSINFL 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV P+  +  A+  IK+EL  R+   ++  +L+EAQR+ +R  +D+EML  TG
Sbjct: 241 AIFPASHYVVPQEQIEQAIVNIKQELAERVKYFQENDQLIEAQRIAERTNFDIEMLRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTG  PGEPP TL ++  +D L+ VDESH+T+PQI GMY GD  RK+TL
Sbjct: 301 FCSGIENYSRHLTGGKPGEPPSTLIDFFGDDFLVIVDESHITVPQIGGMYSGDQSRKSTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL F E+       + VSATP  +E E  + +  EQIIRPTGL+DP
Sbjct: 361 VDFGFRLPSAKDNRPLEFSEFESKIDQMMFVSATPSKYEAEH-ELLRAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+++R  + Q++D+  E++   +QG ++L+T LTKRMAE+LT+Y+ E  IRV+Y+HS++ 
Sbjct: 420 PIDVRPVKGQIDDLLSEVHKETEQGHKVLVTTLTKRMAEELTDYMREVGIRVKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EI+RDLR+  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSL+QT+GR
Sbjct: 480 TLERTEIVRDLRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLVQTVGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD +T S++ AI ET RRR  Q ++NK+H I PQ++++ I ++I    
Sbjct: 540 AARNSEGHVIMYADNMTDSMEAAISETNRRRAIQDQYNKEHGITPQTIQKDIRDLIKISD 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            E+A  +N   +    S++KK+ K +++ L K+M+ AA  LNFEEAA +RDE+K  K
Sbjct: 600 EEEAEQSN---EKDIESMNKKELKENIERLTKKMNRAAAELNFEEAAALRDELKEYK 653


>gi|290961294|ref|YP_003492476.1| ABC excision nuclease subunit B [Streptomyces scabiei 87.22]
 gi|260650820|emb|CBG73937.1| ABC excision nuclease subunit B [Streptomyces scabiei 87.22]
          Length = 709

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/701 (51%), Positives = 478/701 (68%), Gaps = 34/701 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++   + +   ++ + Y PSGDQP AIA+L + I + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVSKIERTVAPLEVVSSYQPSGDQPTAIAELARRIGAGEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V L++G+  ++ EL
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLRVGEEFDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG
Sbjct: 182 LRRFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I + + + ++  SHYV     L  A   I++EL  RL ELEK+G+LLEAQRL  R TY
Sbjct: 241 EIISDDQQLYVFPASHYVAGPERLERAANDIEKELGERLAELEKQGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML   GSC  +ENYS +  GR PG PP TL +Y P+D LL +DESHVT+PQI  MY 
Sbjct: 301 DLEMLRQIGSCSGVENYSMHFDGREPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G  VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLKWEEFQERVGQTVYLSATPGQYELSRSDGH-VEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+
Sbjct: 420 IRPTGLVDPEVVVKPTEGQIDDLVHEIRQRTEKDERVLVTTLTKKMAEDLTDYFLELGIQ 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD IT ++  AIDET RRREKQ+ +NK H I+PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADRITPAMAKAIDETNRRREKQVAYNKAHGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKK------------------------------ 758
           I +++  I  ED  T  +     +     K                              
Sbjct: 600 INDIVARIAREDVDTEQLLGTGYRQQKDGKAAKAPVPALKGRAAGAARGAAKDAGPTDRP 659

Query: 759 --KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             +    ++ + ++M  AA +L FE AAR+RDE+  +K   
Sbjct: 660 AAELAQQIEEMTQRMRAAAADLQFEIAARLRDEVSEMKKEL 700


>gi|256832479|ref|YP_003161206.1| excinuclease ABC, B subunit [Jonesia denitrificans DSM 20603]
 gi|256686010|gb|ACV08903.1| excinuclease ABC, B subunit [Jonesia denitrificans DSM 20603]
          Length = 702

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/678 (52%), Positives = 476/678 (70%), Gaps = 17/678 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +++ PSGDQP+AIA+L + I   EK  +LLG TG+GK+ T A +IE +QRP ++MA
Sbjct: 27  FDVVSEFSPSGDQPSAIAELTRRIQGGEKDVVLLGATGTGKSATSAWLIEQLQRPTLIMA 86

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSINE+++R+RH
Sbjct: 87  PNKTLAAQLATEFRELLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINEEVERLRH 146

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV+SVSCIYG+G+ + Y   +VQ+ +GD +++  LL   V  QY R 
Sbjct: 147 SATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVQIDVGDEIDRDGLLRHFVSMQYTRN 206

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P + E++A R+  FG+DIE I   +PLTG+ +  V+ I I+
Sbjct: 207 DVAFTRGTFRVRGDTVEIIPVY-EELAIRLEFFGDDIEAIYTLHPLTGEVVSQVQRIHIF 265

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV     +  A+  I+ EL+ RL EL ++ +LLEAQRL  R TYD+EM+   GSC 
Sbjct: 266 PASHYVAGPERMERAIASIEAELEERLAELNRDNKLLEAQRLSMRTTYDIEMMRQVGSCS 325

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG  P TL +Y P+D LL +DESHVT+PQI  MY GD  RK +L E+
Sbjct: 326 GIENYSRHIDGRAPGSAPHTLLDYFPDDFLLIIDESHVTVPQIGAMYEGDASRKRSLVEH 385

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPL +EE+      T+ +SATPG +EL    G  VEQIIRPTGLVDP + 
Sbjct: 386 GFRLPSAMDNRPLTWEEFTERIGQTVYLSATPGDYELALSNG-TVEQIIRPTGLVDPKIT 444

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+ DEIN    +  RIL+T LTK+M+EDLT+YL ++ + VRY+HS++ TL+
Sbjct: 445 VKPTKGQIDDLLDEINERTAKNERILVTTLTKKMSEDLTDYLLDKGVAVRYLHSDIDTLK 504

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG+FDVLVGINLLREGLD+PE  LVAILDADK+GFLRS  SLIQTIGRAAR
Sbjct: 505 RVELLRGLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSPRSLIQTIGRAAR 564

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD+IT ++  AI+ET RRREKQ+ +N +H ++PQ +++KI +V D +  ED
Sbjct: 565 NVSGEVHMYADSITPAMAQAIEETERRREKQIAYNTEHGVDPQPLRKKIADVTDMLARED 624

Query: 741 AATTNISIDA-------------QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
             T  +                   +  +     A +  L +QMH AA  L FE AAR+R
Sbjct: 625 IDTQELLAGGYRQTTTPTPAHTPSGVPSATGDLSALITQLTEQMHQAAAELQFELAARLR 684

Query: 788 DEIKRLKSSPYFQGLDDS 805
           DE+  LK     + + D+
Sbjct: 685 DELSDLKRE--LRQMKDA 700


>gi|160935824|ref|ZP_02083199.1| hypothetical protein CLOBOL_00715 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441568|gb|EDP19278.1| hypothetical protein CLOBOL_00715 [Clostridium bolteae ATCC
           BAA-613]
          Length = 660

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/658 (53%), Positives = 471/658 (71%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +++ P+GDQP AI QL+KG     + + LLGVTGSGKTFTMA VI+ +Q+P +
Sbjct: 1   MDHFELVSEFQPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIQQLQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID+
Sbjct: 61  IIAHNKTLAAQLYSEFKEFFPKNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+GS   Y +M++ L+ G   ++ E++  L+  QY
Sbjct: 121 LRHSATAALSEREDVIIVASVSCIYGLGSPIDYKEMVISLRPGMIKDRDEVIHKLIDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD ++I+P++ + VA+RV  FG++++ ISE   LT +    +  +
Sbjct: 181 DRNDMDFKRGTFRVRGDVLDIYPAYSDGVAYRVEFFGDEVDRISEIDTLTDETKAQLGHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV P+  +  A + I  EL+ R+   + E +LLEAQR+ +R  +D+EM+  TG
Sbjct: 241 AIFPASHYVVPKEKMMEATENILTELEERVTFFKSEDKLLEAQRISERTNFDVEMMRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTG  PGEPP TL +Y PED L+ VDESH+T+PQ+ GMY GD  RK TL
Sbjct: 301 FCSGIENYSRHLTGGLPGEPPCTLIDYFPEDFLIIVDESHITLPQVRGMYAGDRSRKTTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS +DNRPL F E+       + VSATP ++E E  + + VEQIIRPTGL+DP
Sbjct: 361 VDFGFRLPSALDNRPLAFPEFESKINQMMFVSATPSAYEAEH-ELMRVEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    Q++D+  E+N       ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ 
Sbjct: 420 EISVRPVEGQIDDLVSEVNKEVAAHHKVLITTLTKRMAEDLTDYMREVGIRVKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRD+R+  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERAEIIRDMRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD +T S+ +AI+ET RRR+ Q ++N+ H I P ++K+ + ++I    
Sbjct: 540 AARNSEGHVIMYADKVTDSMAVAIEETNRRRQIQQKYNEDHGITPTTIKKAVRDLIAISK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             +A   +   D +  S+ +K+ K   K L K+MH AA  LNFEEAAR+RD +  +K 
Sbjct: 600 AVNADDKHFKKDPE--SMDEKELKKLSKELEKKMHQAAAELNFEEAARLRDRMIEIKK 655


>gi|160943190|ref|ZP_02090426.1| hypothetical protein FAEPRAM212_00676 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445429|gb|EDP22432.1| hypothetical protein FAEPRAM212_00676 [Faecalibacterium prausnitzii
           M21/2]
          Length = 685

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/657 (52%), Positives = 461/657 (70%), Gaps = 7/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AIAQL++G+   ++ Q LLGVTGSGKTFTMA VI    RP +V+A
Sbjct: 6   FELVSNYAPTGDQPQAIAQLVEGVQRGDRCQTLLGVTGSGKTFTMANVIAQCNRPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF++FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++IDR+RH
Sbjct: 66  HNKTLAAQLCTEFRSFFPNNAVEYFVSYYDYYQPEAYIPSTDTYIEKDSAINDEIDRLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +G    Y  M++ L+ G  +E+ EL   LV  QY+R 
Sbjct: 126 SATAALSERRDVIIVASVSCIYSLGDPIDYRSMVISLRPGMQMERDELCKKLVTLQYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  +R  FRV GD+++I+ +++ ++A RV  FG++I+ I+EF PLTG K   V+ + I+
Sbjct: 186 DVNFVRNKFRVHGDTVDIYLAYMSELAIRVEFFGDEIDRITEFNPLTGSKQNVVKHVAIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+        A++ I+ E   ++ +   EG+L+EAQR+ QR  YD+EML   G C+
Sbjct: 246 PASHYIVSAEKKAAALEKIRAECDAQVKQFTAEGKLIEAQRIAQRTNYDIEMLNEVGICK 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  L+GR PG  P TL +Y PED LLFVDESHVT+PQ+  MY GD+ RK TL EY
Sbjct: 306 GIENYSAVLSGRAPGSMPTTLLDYFPEDFLLFVDESHVTLPQVRAMYGGDYARKKTLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE        I VSATPG +E       + +Q+IRPTGL+DP + 
Sbjct: 366 GFRLPSAFDNRPLKFEEVESKLNQMIFVSATPGEYERRNS-SQVAQQVIRPTGLLDPVIS 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV D+  EIN   Q+  R+L+T LTK+MAEDLT+YL E+ I+V+YMH EV T E
Sbjct: 425 VRPVEGQVVDLLGEINARIQRQERVLVTTLTKKMAEDLTDYLTEQGIKVKYMHHEVDTFE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII+DLRLG  DV+VGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 485 RMEIIKDLRLGSIDVVVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S++ AI ET RRR  Q+ +N++H I P+++ + I + I+     +
Sbjct: 545 NAEGMVIMYADVVTDSMERAITETERRRAIQMAYNEEHGIVPKTIVKAIADSIEISDKAE 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            A  N         + K + +A ++ L ++M  AA  L FE AA +RD+I RL+   
Sbjct: 605 NAKRNT------RRMGKMEREAAIERLTREMKEAAKLLEFEHAAFLRDQIDRLRRGE 655


>gi|148381328|ref|YP_001255869.1| excinuclease ABC subunit B [Clostridium botulinum A str. ATCC 3502]
 gi|148290812|emb|CAL84946.1| excinuclease ABC subunit B [Clostridium botulinum A str. ATCC 3502]
          Length = 665

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/658 (52%), Positives = 466/658 (70%), Gaps = 2/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + ++P+GDQP AI  + KGI  REK Q L+GVTGSGKTFTMA +IE +Q+P +
Sbjct: 4   MNQFKVISKFNPTGDQPKAIKSIAKGIEKREKFQTLIGVTGSGKTFTMANIIEKVQKPTL 63

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF+ FFP+NAVEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID+
Sbjct: 64  VLAHNKTLAAQLCSEFREFFPNNAVEYFVSYYDYYQPEAYVAQSDTYIEKDASINDEIDK 123

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  LV+ QY
Sbjct: 124 LRHSATSALFERKDVIIVASVSCIYGLGNPEEYKKLTISLREGMEKDRDEIIKKLVEIQY 183

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD ++IFP+     A RV  FG++I+ I EF  LTG+ I  ++ I
Sbjct: 184 ERNDIDFSRGTFRVKGDVLDIFPASSSSKAVRVEFFGDEIDRIKEFDVLTGETITKLKHI 243

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+ T +  L  A+K I+EEL+ R+ EL  + ++LEAQRL+QR  +D+EM+   G
Sbjct: 244 SIFPASHFATSKDRLEVAIKDIEEELEERVKELVSQDKILEAQRLKQRTNFDIEMMREVG 303

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L GR  G PP TL +Y P+D LLF+DESHVT+PQ+  M  GD  RK +L
Sbjct: 304 YCTGIENYSRVLDGRAKGTPPQTLLDYFPQDFLLFIDESHVTLPQVKAMQAGDKSRKDSL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP   DNRPL F+E+       + VSATP  +ELE       EQ+IRPTGL+DP
Sbjct: 364 VEYGFRLPCAYDNRPLTFKEFENKLNQVVFVSATPAKYELEYSTN-TAEQVIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++  + Q++D+Y  I    ++G RIL+T LTK+MAEDLT+YL E  ++ RY+HS++ 
Sbjct: 423 EIIVKPVKGQIDDLYTSIQETIKRGFRILVTTLTKKMAEDLTDYLKEMGVKTRYLHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++II DLR G+F VLVGINLLREGLDIPE  LV ILDADKEGFLRS+TSLIQT+GR
Sbjct: 483 TIERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+Y D ITKS++  I ET RRR+ Q+E+N++H I P+++ + I EVI    
Sbjct: 543 AARNSESKVIMYGDVITKSMEKTIKETNRRRKIQMEYNEEHGIVPKTIIKDIREVIQISD 602

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + +      +++    S +       ++   ++M  AA NL FE+AA +RD I +LK 
Sbjct: 603 IAEERKEYDNLNEALKSYN-NDIDKLIEKYEEEMKEAAQNLQFEKAAHLRDVIYKLKK 659


>gi|22299576|ref|NP_682823.1| excinuclease ABC subunit B [Thermosynechococcus elongatus BP-1]
 gi|81844844|sp|Q8DHC6|UVRB_THEEB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|22295760|dbj|BAC09585.1| excinuclease ABC subunit B [Thermosynechococcus elongatus BP-1]
          Length = 668

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/665 (53%), Positives = 457/665 (68%), Gaps = 6/665 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F++   + P+GDQP AI +L+ G+ +  + Q LLG TG+GKT T+A+VIEA+ RP +V
Sbjct: 4   TPFRIHAPFEPTGDQPQAIQKLVAGVQAGHRFQTLLGATGTGKTHTIARVIEALGRPTLV 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQL +E ++FFP NAVEYF+SYYDYYQPEAY+P TDTYIEK +SINE+ID +
Sbjct: 64  LAHNKTLAAQLCNELRSFFPENAVEYFISYYDYYQPEAYIPVTDTYIEKSASINEEIDML 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSATRSL ER D IVV+S+SCIYG+G    Y +  + L++G   E ++LL  L   QY 
Sbjct: 124 RHSATRSLFERRDVIVVASISCIYGLGIPAEYLKAAIPLEVGRETELRQLLRQLATIQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ + RG FRV GD +EI P++ ED   RV  FG++IE I    PLTG+ +++VE + 
Sbjct: 184 RNDVELGRGRFRVRGDVLEIGPAY-EDRIIRVEFFGDEIEAIRYVDPLTGETLQSVERLN 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY   H+VTP   L  A   I+ EL+ ++  LE + +LLEAQRL QR  YDLEML   G 
Sbjct: 243 IYPAKHFVTPAERLEAACVAIEAELQAQVANLEAQNKLLEAQRLSQRTRYDLEMLRQVGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  +ENYSR+L GR  GEPP  L +Y PE+ LL VDESHVT+PQI GMY GD  RK  L 
Sbjct: 303 CNGVENYSRHLAGRAAGEPPECLIDYFPENWLLVVDESHVTVPQIRGMYNGDQARKKVLI 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS  DNRPL+ EE+       I VSATPG WEL      +VEQIIRPTG+VDP 
Sbjct: 363 DHGFRLPSAADNRPLKPEEFWQKVQQCIFVSATPGDWELAVSTQ-VVEQIIRPTGVVDPE 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R  + QV+D+Y EI L   +  R+L+T LTKRMAEDLTEY  ER +RVRY+HSE+  
Sbjct: 422 IFVRPTQGQVDDLYGEIRLRCDRQERVLVTTLTKRMAEDLTEYFQERGVRVRYLHSEINA 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ERIEI+  LR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 482 IERIEILEALRQGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK----IMEVID 734
           AR+V  + ILYADT+T+S+Q AI ET RRR  QL +N+ H I PQ + +K    I+  +D
Sbjct: 542 ARHVRGQAILYADTLTESMQKAIQETERRRAIQLAYNQAHGIIPQPIVKKTSNAILAFLD 601

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                +A +  +        LS +     ++ L  +M  AA  L FEEAAR RD+IKRL+
Sbjct: 602 VSRRLNAESVPVLSSQTLQDLSLEDIPPLIQDLEAKMKAAAQELAFEEAARYRDQIKRLR 661

Query: 795 SSPYF 799
                
Sbjct: 662 DRLVG 666


>gi|87123270|ref|ZP_01079121.1| excinuclease ABC, B subunit [Synechococcus sp. RS9917]
 gi|86168990|gb|EAQ70246.1| excinuclease ABC, B subunit [Synechococcus sp. RS9917]
          Length = 678

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/677 (51%), Positives = 463/677 (68%), Gaps = 16/677 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++   Y P GDQP AI QL++G++  E+ Q LLG TG+GKTFTMA VI    RPA+
Sbjct: 1   MPAFELSAPYSPKGDQPTAIQQLVEGVNGGERFQTLLGATGTGKTFTMANVIAQTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFPHNAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPHNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++GD++  +  L  LV  QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGDTLNIRAQLRDLVNNQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D  I RG FR+ GD +EI P++ +D   R+ +FG+++E I    P TG+ ++++E +
Sbjct: 181 SRNDTEIARGRFRIKGDVLEIGPAY-DDRLVRIELFGDEVEAIRYVDPTTGEILQSLEAV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP+  L+ A+K I+ ELK RL  L  EG+LLEAQRLEQR TYDLEML+  G
Sbjct: 240 NIYPAKHFVTPKDRLDVAIKAIRRELKERLEVLHSEGKLLEAQRLEQRTTYDLEMLQQVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLAGREAGSPPECLIDYFPDDWLLIVDESHVTCSQLQAMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+ EE+      ++ VSATPG WEL+  +G + EQ+IRPTG++DP
Sbjct: 360 IEHGFRLPSAADNRPLKGEEFWQKARQSVFVSATPGDWELKVSKGQVAEQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    QV+D+  EI   A +  R+L+T LTKRMAEDLT+YL E  +RVRY+HSE+ 
Sbjct: 420 IVEVRPTTGQVDDLLGEIRSRAAKQQRVLVTTLTKRMAEDLTDYLAEHEVRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---- 733
           AAR+V    +LYADT+T S+  AI+ET RRR+ Q  +N+KH I P +  +K    I    
Sbjct: 540 AARHVEGVALLYADTMTDSMAKAIEETERRRKIQQAYNEKHGIVPTAAGKKASNSILSFL 599

Query: 734 -----------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                      D  L++ A     +++     ++       ++ L  +M  AA  L+FEE
Sbjct: 600 ELSRKLKSEGPDADLVQVAGKAVQALEDDAEGMALDALPELIEQLEAKMKEAAKKLDFEE 659

Query: 783 AARIRDEIKRLKSSPYF 799
           AA +RD IK+L+     
Sbjct: 660 AANLRDRIKQLRHKLVG 676


>gi|220910556|ref|YP_002485867.1| excinuclease ABC subunit B [Cyanothece sp. PCC 7425]
 gi|254764904|sp|B8HQA9|UVRB_CYAP4 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|219867167|gb|ACL47506.1| excinuclease ABC, B subunit [Cyanothece sp. PCC 7425]
          Length = 665

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/666 (53%), Positives = 456/666 (68%), Gaps = 4/666 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T FQ++  + P+GDQP AIAQL   + +  + Q LLG TG+GKT T+A+VIE + +P +
Sbjct: 1   MTGFQIKAPFEPTGDQPRAIAQLTASLQAEHRFQTLLGATGTGKTHTIARVIEKIGKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P TDTYIEK ++INE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYIPVTDTYIEKTAAINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y    V L++G  V+Q++LL  L   QY
Sbjct: 121 LRHSATRSLFERKDVIVVASISCIYGLGIPSEYLNASVPLQVGIEVDQRQLLRDLTTIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG  +++++ +
Sbjct: 181 SRNDLDLGRGRFRVKGDVLEIGPAY-EDRIVRVEFFGDEIDAIRYVDPVTGTTLQSLDNL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           +IY   H+VTP+  L  A   I  ELK RL ELE + +LLEAQRL+QR  YDLEML   G
Sbjct: 240 RIYPARHFVTPQERLEIACADIAAELKDRLTELEAQNKLLEAQRLDQRTRYDLEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR+PGEPP TL +Y P+D LL VDESHVT+PQI GMY GD  RK  L
Sbjct: 300 YCNGVENYSRHLAGRSPGEPPETLIDYFPKDWLLVVDESHVTVPQIRGMYNGDQSRKRVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+       I VSATPG WEL+  +  I+EQIIRPTG+VDP
Sbjct: 360 IDHGFRLPSAADNRPLKSEEFWQKVTQCIFVSATPGDWELDISEDRIIEQIIRPTGVVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    QV+D+  E+    ++  R+L+T LTKRMAEDLTEY  +R +RVRY+HSE+ 
Sbjct: 420 EIFVRPTTGQVDDLLGEVRDRIERRERVLITTLTKRMAEDLTEYFQDRGVRVRYLHSEIG 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ERIEI+ DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 AIERIEILEDLRKGTFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V  + ILYAD +T S+  AI ET RRR  Q  +N+KH I PQ + +K    I   L
Sbjct: 540 AARHVRGQAILYADNLTDSMAKAISETERRRAIQTAYNQKHGITPQPIVKKASNAILAFL 599

Query: 738 LEDAATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                     +D    Q   L  +     +  L  QM  AA  L FEEAA+ RD IK+L+
Sbjct: 600 EVSRRLNAQELDTAYEQADELPLEDIPELITQLEAQMKEAAKKLEFEEAAKYRDRIKQLR 659

Query: 795 SSPYFQ 800
                +
Sbjct: 660 DKLLGR 665


>gi|25028055|ref|NP_738109.1| excinuclease ABC subunit B [Corynebacterium efficiens YS-314]
 gi|259505606|ref|ZP_05748508.1| excinuclease ABC, B subunit [Corynebacterium efficiens YS-314]
 gi|23493339|dbj|BAC18309.1| putative xcinuclease ABC subunit B [Corynebacterium efficiens
           YS-314]
 gi|259166799|gb|EEW51353.1| excinuclease ABC, B subunit [Corynebacterium efficiens YS-314]
          Length = 701

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/687 (51%), Positives = 476/687 (69%), Gaps = 12/687 (1%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
               +    +    F++ +++ P+GDQPAAIA+L K + + E+  +LLG TG+GK+ T A
Sbjct: 14  EHRPVGEVERSDDKFEVISEFQPAGDQPAAIAELDKRLTNGERDVVLLGATGTGKSATAA 73

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            +IE  QRP +VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPEAY+ +TDTYIE
Sbjct: 74  WLIEKQQRPTLVMAPNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIE 133

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+SSINE ++R+RHSAT SLL R D +VVSSVSCIYG+G+ +SY    + LK+GD V++ 
Sbjct: 134 KDSSINEDVERLRHSATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSIVLKVGDEVDRD 193

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
             L  LV  QY R DI   RG FRV GD+++I P++ E++A RV  FG++I+ +   +PL
Sbjct: 194 RFLRLLVDIQYDRNDIAFTRGAFRVKGDTVDIIPAY-EELAVRVEFFGDEIDSLYYIHPL 252

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG  +RNV+ + I+  +HYV     +  A+  IK EL+ RL +LE  G+LLEAQRL  R 
Sbjct: 253 TGDVVRNVKEVHIFPATHYVAGPERMEKAVADIKAELEDRLADLENRGKLLEAQRLRMRT 312

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
            YDLEM+E  G C  IENYSR++ GR PG  P TL +Y PED L  +DESHVT+PQI GM
Sbjct: 313 EYDLEMIEQVGFCSGIENYSRHIDGRGPGTAPATLIDYFPEDFLTIIDESHVTVPQIGGM 372

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           + GD  RK  L E+GFRLPS +DNRPL +EE++  R  T+ +SATPG +E+    G  VE
Sbjct: 373 FEGDMSRKRNLVEFGFRLPSALDNRPLTWEEFDARRGQTVFMSATPGKFEIAAAGGEFVE 432

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q+IRPTGLVDP V ++  + Q++D+  EI    ++  R+L+T LTK+MAEDLT+YL E  
Sbjct: 433 QVIRPTGLVDPKVTVKPTKGQIDDLIHEIRGRTEKDERVLVTTLTKKMAEDLTDYLLENG 492

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           IRVRY+HS++ TL+R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLR
Sbjct: 493 IRVRYLHSDIDTLQRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLR 552

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S TSLIQTIGRAARNV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +NK++ I+PQ ++
Sbjct: 553 STTSLIQTIGRAARNVSGEVIMYADKITDSMQYAIEETDRRREKQIAYNKEYGIDPQPLR 612

Query: 727 EKIMEVIDPILLEDAA---------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
           +KI +++D +     +            +        +   + +  +  L  QM  AA  
Sbjct: 613 KKIADILDQVYENQESGVGAPGLTGDAAVVEKPDTSGMQVDQLQKLIDDLSAQMAAAARE 672

Query: 778 LNFEEAARIRDEIKRLKSSPYFQGLDD 804
           L FE A R+RDE+  LK     +G+ +
Sbjct: 673 LKFELAGRLRDEVFELKKE--LKGMKE 697


>gi|269956328|ref|YP_003326117.1| excinuclease ABC subunit B [Xylanimonas cellulosilytica DSM 15894]
 gi|269305009|gb|ACZ30559.1| excinuclease ABC, B subunit [Xylanimonas cellulosilytica DSM 15894]
          Length = 701

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/694 (50%), Positives = 479/694 (69%), Gaps = 27/694 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + +  + +  F++ ++Y PSGDQP AIAQL + I + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVTDLQRTVAPFEVISEYTPSGDQPTAIAQLTERIQAGEKDVVLLGATGTGKSATTAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAY+ +TDTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLATEFRELLPNNAVEYFVSYYDYYQPEAYIAQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN++++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V+L +GD V++ +L
Sbjct: 122 SSINDEVERLRHSATSSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVRLDVGDVVDRDQL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V+ QY R D+   RGTFRV GD++EI P + E++A R+  FG++IE I   +PLTG
Sbjct: 182 LRRFVQMQYTRNDVAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIEAIQTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             +R+ +++ ++  +HYV     +  A+  I++EL+ RL  LEK+ +LLEAQRL  R TY
Sbjct: 241 DVVRDEKSVYLFPATHYVAGPERMERAIAGIEKELEERLAVLEKQNKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   GSC  IENYS ++ GR PG PP TL +Y PED LL +DESHVT+PQI  M+ 
Sbjct: 301 DIEMMRQIGSCSGIENYSLHIDGREPGTPPNTLLDYFPEDFLLVIDESHVTVPQIGAMFE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L E+GFRLPS MDNRPLR+EE+      T+ +SATPG +E     G +VEQI
Sbjct: 361 GDMSRKRALVEHGFRLPSAMDNRPLRWEEFVERIGQTVYLSATPGEYETSLSDG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E+ I+
Sbjct: 420 IRPTGLVDPEVIVKPTTGQIDDLLHEIRERVERDERVLVTTLTKKMAEDLTDYFLEKGIK 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V+Y+HS+V TL R+E++R+LRLG+FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS 
Sbjct: 480 VQYLHSDVDTLRRVELLRELRLGQFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSA 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +V +YAD IT ++ +A++ETTRRREKQ+ +N  H ++P  +++K
Sbjct: 540 RSLIQTIGRAARNVSGQVHMYADKITPAMAIALEETTRRREKQIAYNTAHGVDPTPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS-------------------------LSKKKGKAH 763
           I +V D +  ED  T  +     +                           ++  +    
Sbjct: 600 IADVTDMLAREDIDTQQLLAGGYRKPAERRAKAPLPGSPKEGATTGNRLAGVAAGELAEL 659

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L  QMH AA  L FE AAR+RDEI  LK   
Sbjct: 660 IQELSDQMHAAAAELQFEVAARLRDEISGLKKEL 693


>gi|153931681|ref|YP_001385704.1| excinuclease ABC subunit B [Clostridium botulinum A str. ATCC
           19397]
 gi|153935352|ref|YP_001389110.1| excinuclease ABC subunit B [Clostridium botulinum A str. Hall]
 gi|153937973|ref|YP_001392743.1| excinuclease ABC subunit B [Clostridium botulinum F str. Langeland]
 gi|168178931|ref|ZP_02613595.1| excinuclease ABC, B subunit [Clostridium botulinum NCTC 2916]
 gi|170755543|ref|YP_001783024.1| excinuclease ABC subunit B [Clostridium botulinum B1 str. Okra]
 gi|189037960|sp|A7GIY3|UVRB_CLOBL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|229557959|sp|A7FYY1|UVRB_CLOB1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|229557960|sp|B1IFX3|UVRB_CLOBK RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|152927725|gb|ABS33225.1| excinuclease ABC, B subunit [Clostridium botulinum A str. ATCC
           19397]
 gi|152931266|gb|ABS36765.1| excinuclease ABC, B subunit [Clostridium botulinum A str. Hall]
 gi|152933869|gb|ABS39367.1| excinuclease ABC, B subunit [Clostridium botulinum F str.
           Langeland]
 gi|169120755|gb|ACA44591.1| excinuclease ABC, B subunit [Clostridium botulinum B1 str. Okra]
 gi|182670234|gb|EDT82210.1| excinuclease ABC, B subunit [Clostridium botulinum NCTC 2916]
 gi|295320723|gb|ADG01101.1| excinuclease ABC, B subunit [Clostridium botulinum F str. 230613]
 gi|322807710|emb|CBZ05285.1| excinuclease ABC subunit B [Clostridium botulinum H04402 065]
          Length = 662

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/658 (52%), Positives = 466/658 (70%), Gaps = 2/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + ++P+GDQP AI  + KGI  REK Q L+GVTGSGKTFTMA +IE +Q+P +
Sbjct: 1   MNQFKVISKFNPTGDQPKAIKSIAKGIEKREKFQTLIGVTGSGKTFTMANIIEKVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF+ FFP+NAVEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID+
Sbjct: 61  VLAHNKTLAAQLCSEFREFFPNNAVEYFVSYYDYYQPEAYVAQSDTYIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  LV+ QY
Sbjct: 121 LRHSATSALFERKDVIIVASVSCIYGLGNPEEYKKLTISLREGMEKDRDEIIKKLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD ++IFP+     A RV  FG++I+ I EF  LTG+ I  ++ I
Sbjct: 181 ERNDIDFSRGTFRVKGDVLDIFPASSSSKAVRVEFFGDEIDRIKEFDVLTGETITKLKHI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+ T +  L  A+K I+EEL+ R+ EL  + ++LEAQRL+QR  +D+EM+   G
Sbjct: 241 SIFPASHFATSKDRLEVAIKDIEEELEERVKELVSQDKILEAQRLKQRTNFDIEMMREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L GR  G PP TL +Y P+D LLF+DESHVT+PQ+  M  GD  RK +L
Sbjct: 301 YCTGIENYSRVLDGRAKGTPPQTLLDYFPQDFLLFIDESHVTLPQVKAMQAGDKSRKDSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP   DNRPL F+E+       + VSATP  +ELE       EQ+IRPTGL+DP
Sbjct: 361 VEYGFRLPCAYDNRPLTFKEFENKLNQVVFVSATPAKYELEYSTN-TAEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++  + Q++D+Y  I    ++G RIL+T LTK+MAEDLT+YL E  ++ RY+HS++ 
Sbjct: 420 EIIVKPVKGQIDDLYTSIQETIKRGFRILVTTLTKKMAEDLTDYLKEMGVKTRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++II DLR G+F VLVGINLLREGLDIPE  LV ILDADKEGFLRS+TSLIQT+GR
Sbjct: 480 TIERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+Y D ITKS++  I ET RRR+ Q+E+N++H I P+++ + I EVI    
Sbjct: 540 AARNSESKVIMYGDVITKSMEKTIKETNRRRKIQMEYNEEHGIVPKTIIKDIREVIQISD 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + +      +++    S +       ++   ++M  AA NL FE+AA +RD I +LK 
Sbjct: 600 IAEERKEYDNLNEALKSYN-NDIDKLIEKYEEEMKEAAQNLQFEKAAHLRDVIYKLKK 656


>gi|318043042|ref|ZP_07974998.1| excinuclease ABC subunit B [Synechococcus sp. CB0101]
          Length = 669

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/667 (53%), Positives = 455/667 (68%), Gaps = 6/667 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             +Q+   Y P GDQPAAI  L+ G+   E+ Q LLG TG+GKTFT+A VI    RPA+V
Sbjct: 3   NPYQLHAPYSPKGDQPAAIQGLVAGVEGGERYQTLLGATGTGKTFTIANVIAQTGRPALV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +
Sbjct: 63  LAHNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDML 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G+++  +  L  LV  QY 
Sbjct: 123 RHSATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGETLNLRGSLRELVNNQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ I RG FRV GD +EI P++ ED   R+ +FG+++E I    P TG+ ++++E+I 
Sbjct: 183 RNDLEISRGRFRVRGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSLESIN 241

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY   H+VTP+  L  A+K I+ EL+ RL  L ++GRLLEAQRLEQR TYDLEMLE  G 
Sbjct: 242 IYPAKHFVTPKERLADAIKAIRSELRERLDVLNEQGRLLEAQRLEQRTTYDLEMLEQVGY 301

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L 
Sbjct: 302 CNGVENYARHLAGRAAGTPPECLIDYFPDDWLLVVDESHVTCSQLQAMYNGDQSRKQVLI 361

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPS  DNRPL+  E+      TI VSATPG WE+ Q  G +VEQ+IRPTG++DP 
Sbjct: 362 EHGFRLPSAADNRPLKGSEFWEKARQTIFVSATPGDWEMRQSDGQVVEQVIRPTGVLDPI 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R    QV+D+  EI L A +  R+L+T LTKRMAEDLT+YL E  +RVRY+HSE+ +
Sbjct: 422 VEVRPTEGQVDDLLGEIRLRADKRERVLVTTLTKRMAEDLTDYLAENGVRVRYLHSEIHS 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ERIEII+DLR G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 482 IERIEIIQDLRNGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL- 737
           AR+V    +LYAD +T S+  AI ET RRR  Q  +N+KH I P    ++    I   L 
Sbjct: 542 ARHVEGVALLYADNLTDSMDKAITETERRRAIQQSYNEKHGITPTPAGKRAGNSILAFLE 601

Query: 738 ----LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
               L D      +  A+   +        ++ L ++M  AA NL FEEAA +RD IK L
Sbjct: 602 VSRRLNDEQLEQATEQAEHNEVPLDALPELIQQLEEKMKSAAKNLEFEEAANLRDRIKGL 661

Query: 794 KSSPYFQ 800
           +     +
Sbjct: 662 RQKLVGK 668


>gi|283850421|ref|ZP_06367710.1| excinuclease ABC, B subunit [Desulfovibrio sp. FW1012B]
 gi|283574447|gb|EFC22418.1| excinuclease ABC, B subunit [Desulfovibrio sp. FW1012B]
          Length = 671

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/670 (52%), Positives = 467/670 (69%), Gaps = 8/670 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ++++Y P GDQP AI  L   +      Q+LLG TG+GKTFTMA+V+  + RPA+V+
Sbjct: 2   LFQLESEYTPQGDQPGAIDALAANLDQGVPSQVLLGATGTGKTFTMAQVVARLNRPALVI 61

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLYSEFK  FP+NAVEYFVSYYDYYQPEAY+PRTDTYIEK++SIN+ ID++R
Sbjct: 62  APNKTLAAQLYSEFKGLFPNNAVEYFVSYYDYYQPEAYLPRTDTYIEKDASINDDIDKLR 121

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT SLL R D ++V+SVSCIYG+GS + Y +M++ L +G+    + +L  LV+ QY+R
Sbjct: 122 HAATHSLLTRKDVLIVASVSCIYGLGSRDYYERMVLTLTVGEKTGMEAVLGRLVEIQYER 181

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RG FRV GD IE+ P++  D A R+  FG+++E I E  PLTG+ + +++   +
Sbjct: 182 NDYDFHRGVFRVRGDVIELIPAYSRDRALRLEFFGDELESILETDPLTGEVLGSMQKAIV 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SHYV+ R  LN A+  I+EEL++RL EL     LL AQRLE R   DLEM+E  G C
Sbjct: 242 FPASHYVSDRTNLNRAVSDIREELRLRLTELRGANDLLAAQRLEMRTMQDLEMIEELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L GR  GEPP TL +Y PED +LFVDESH+T+PQI GM+ GD  RK TL +
Sbjct: 302 NGIENYSRHLDGRKAGEPPYTLLDYFPEDFILFVDESHITVPQIGGMFAGDRSRKQTLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL FEE+       + VSATPG WE+ + +G++VEQIIRPTGL+DP V
Sbjct: 362 FGFRLPSALDNRPLNFEEFLGRIGQAVYVSATPGDWEVNRSEGVVVEQIIRPTGLLDPLV 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + QV+D+  E      QG R+L+T LTKRMAE+L EY     +  RY+HS+++TL
Sbjct: 422 EVRPTKGQVDDLMAECRARVAQGERVLVTTLTKRMAEELNEYFNSMGVPSRYLHSDIETL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+ II+ LR G+F VLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT GRA+
Sbjct: 482 ERVAIIKALRQGEFSVLVGINLLREGLDIPEVSLVAILDADKEGFLRSVRSLIQTFGRAS 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  +VILYADT+T+S++ A+DET RRRE+Q   N++  + P+++ + +  V+D +  +
Sbjct: 542 RNVRGRVILYADTVTRSMRAAMDETARRRERQEASNRETGMTPRTIVKAMDSVLDSLYGQ 601

Query: 740 DAATTNISIDAQQL--------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            A     +     +         +S K  +  ++ L ++M  AA  L FE+AA +RD + 
Sbjct: 602 GAGPAGETGVRTGVREEVTAYGDMSPKALEKKIRMLEREMREAAKALEFEKAAELRDRVA 661

Query: 792 RLKSSPYFQG 801
            L++     G
Sbjct: 662 ALRARLLEMG 671


>gi|221633527|ref|YP_002522752.1| excinuclease ABC subunit B [Thermomicrobium roseum DSM 5159]
 gi|221157243|gb|ACM06370.1| excinuclease ABC, B subunit [Thermomicrobium roseum DSM 5159]
          Length = 668

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/663 (53%), Positives = 475/663 (71%), Gaps = 8/663 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ TD+ P+GDQP AI QL++G+    + Q LLG TG+GKTFTMA VI   QRP +
Sbjct: 1   MSRFELVTDFQPTGDQPQAIEQLVEGLQRGYRHQTLLGATGTGKTFTMACVIARWQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEKE+ IN++IDR
Sbjct: 61  VLAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYIPQTDTYIEKETEINDEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R +ATR++  R D I+V+SVSCIYGIGS E + + I+ L+ G  V + ++L  LV  QY
Sbjct: 121 LRLAATRAVRTRRDVIIVASVSCIYGIGSPEEWDKSILALRRGQVVRRDKILRHLVDLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ ++RGTFR  GD IE+FP++ E+ A R+ ++G+++E I EF PLTG+ +   E +
Sbjct: 181 DRNDMTLVRGTFRARGDLIEVFPAY-EEFAVRIELWGDEVERIVEFDPLTGEILATREVM 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           +I+   H+VT    L  A++ I+ EL+ RL EL  +G+LLEAQRLEQR  YD+EML   G
Sbjct: 240 EIFPAKHWVTSGERLEAAIRSIEAELEERLAELRAQGKLLEAQRLEQRTRYDIEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L+GR PGEPP TL +Y P+D L+F+DESH+ IPQ+ GMY GD  RK  L
Sbjct: 300 YCSGIENYSRHLSGRKPGEPPWTLLDYFPDDYLMFIDESHLAIPQVRGMYHGDRSRKEIL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL FEE+       I VSATPG WE E  Q  IVEQ+IRPTG++DP
Sbjct: 360 VEYGFRLPSARDNRPLTFEEFLERINQVIYVSATPGPWEREVSQQ-IVEQVIRPTGILDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R  + Q++D+  EI     +G R L+T LTK+MAEDL +YL E  IR  Y+HSE+ 
Sbjct: 419 EISVRPTKGQIDDLLHEIRQRVARGERALVTTLTKKMAEDLADYLKEIGIRTHYLHSEID 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS+++LIQ IGR
Sbjct: 479 TIERVEILRDLRLGIYDVVVGINLLREGLDLPEVSLVAILDADKEGYLRSESALIQMIGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+VN  VI+YADTIT S+Q AI+ET RRR+ Q+ +N++H I P+S+ +++ ++ D I 
Sbjct: 539 AARHVNGHVIMYADTITSSMQKAIEETYRRRQIQMAYNQEHGIEPRSIVKQVRDLTDRIR 598

Query: 738 LEDAATTNISIDAQQL------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                     + A          L+  +    ++ L +QM  AA  L FE+AA +RD+I 
Sbjct: 599 QAAEERAPYEVAAPVPHAGAIGELAPDELARLIRDLERQMKEAAKQLEFEKAALLRDQIF 658

Query: 792 RLK 794
            L+
Sbjct: 659 ELR 661


>gi|84496576|ref|ZP_00995430.1| excinuclease ABC subunit B [Janibacter sp. HTCC2649]
 gi|84383344|gb|EAP99225.1| excinuclease ABC subunit B [Janibacter sp. HTCC2649]
          Length = 704

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/697 (49%), Positives = 486/697 (69%), Gaps = 30/697 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
               +  + +  FQ+ +D+ P+GDQPAAI  L + I++ ++  +LLG TG+GK+ T A +
Sbjct: 2   RPTTDLKRTVAPFQVVSDFEPAGDQPAAIKDLTERINAGQQNVVLLGATGTGKSATTAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           +E +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDY+QPEAYVP+TDTYIEK+
Sbjct: 62  VEQVQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYFQPEAYVPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN++++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +VQL++GD +++ +L
Sbjct: 122 SSINDEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDKMVQLRVGDELDRDDL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V+ QY R D+   RGTFRV GD++EI P + E++A R+  FG+++++I   +PLTG
Sbjct: 182 LRRFVQMQYTRNDLAFTRGTFRVRGDTVEIIPMY-EELAVRIEFFGDEVDKIYTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + +R+ + + ++  SHY+     +  A+  I+ EL  +L   E +G+LLEAQRL  R TY
Sbjct: 241 EIVRDEQEMYVFPASHYIAGPERMERAIAGIEHELAEQLKTFESQGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   GSC  IENYS +L GR  G  P  L +Y PED LL +DESHVT+PQI  MY 
Sbjct: 301 DIEMMRQVGSCSGIENYSMHLDGRTAGTAPNCLLDYFPEDFLLVLDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS MDNRPL++EE+      T+ +SATPG++E+ Q  G +VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSAMDNRPLKWEEFLERIGQTVYLSATPGNYEMAQADG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGL+DP + ++  + Q++D+  EINL A +  R+L+T LTK+MAEDLT+YL ++ +R
Sbjct: 420 IRPTGLIDPEIVLKPTKGQIDDLLHEINLRAARNERVLVTTLTKKMAEDLTDYLLDKGVR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ TL R+E++R+LRLG++DVLVGINLLREGLD+PE  LV+ILDADKEGFLRS 
Sbjct: 480 VRYLHSDIDTLRRVELLRELRLGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSA 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +V +YAD +T S+Q A+DET+RRREKQ+ +N +  ++PQ ++++
Sbjct: 540 RSLIQTIGRAARNVSGQVHMYADKVTPSMQEAVDETSRRREKQVAYNLERGVDPQPLRKR 599

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKKK----------------------------G 760
           I ++ D +  EDA T  +    +  S  K                               
Sbjct: 600 IADITDMLEREDADTEELLGSGRARSRGKSDGGRGGRGALAADAVTVGAGRLENIAAGDL 659

Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
              ++ L  QMH AA +L+FE AAR+RDE+  LK   
Sbjct: 660 ANLIQELTTQMHKAAADLHFELAARLRDEVGDLKKEL 696


>gi|256826976|ref|YP_003150935.1| Excinuclease ABC subunit B [Cryptobacterium curtum DSM 15641]
 gi|256583119|gb|ACU94253.1| Excinuclease ABC subunit B [Cryptobacterium curtum DSM 15641]
          Length = 708

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/665 (53%), Positives = 483/665 (72%), Gaps = 2/665 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++   + PSGDQPAAI  L +G+    + Q LLGVTGSGKTFTMAK IE++QRP +V+
Sbjct: 25  PFRVVAPFEPSGDQPAAIRALAQGVQDGLRYQTLLGVTGSGKTFTMAKTIESLQRPTLVL 84

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
            PNK LAAQ+ +E + FFP NAV YFVSYYDYYQPEAYVP TDT+IEK++SINE+++++R
Sbjct: 85  EPNKTLAAQVAAELREFFPDNAVVYFVSYYDYYQPEAYVPSTDTFIEKDASINEEVEKLR 144

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT +LL R D IVV+SVSCIYGIGS   Y+ M V       +++ +++  L+  QY R
Sbjct: 145 HAATSALLSRRDVIVVASVSCIYGIGSPMDYAGMAVFADKDKPIDRDQMIHGLIDIQYDR 204

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D  + RGTFRV GD++++FP + ++   R+  +G++IE I+E   +TG+ + + E + I
Sbjct: 205 NDYELTRGTFRVRGDALDVFPPYADN-PIRLEFWGDEIESITEIDNVTGEVLNSYEALPI 263

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SHYVT +P ++ A+K I+EEL+ RL + ++EG+LLEAQRLE R++YDLEM+ET G C
Sbjct: 264 WPASHYVTAKPKMDHAIKTIREELRERLAQFKEEGKLLEAQRLEMRVSYDLEMMETMGFC 323

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L GR+PGEPP TL +Y P D +  VDESHVT+PQ+ GM+ GD  RK TLAE
Sbjct: 324 SGIENYSRHLDGRSPGEPPYTLLDYFPRDFICIVDESHVTVPQVRGMHEGDRSRKVTLAE 383

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPSC+DNRPLRF+E+       I VSATPG +E    Q   VEQIIRPTGL+DP +
Sbjct: 384 HGFRLPSCLDNRPLRFDEFEQRVGQFIYVSATPGDYENRVSQ-KTVEQIIRPTGLLDPEI 442

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R   +Q++D+ DE    AQ   R L+T LTK+MAEDLT++L +++I+ RYMHS++ TL
Sbjct: 443 IVRPTASQIDDIIDEARARAQNHERTLITTLTKKMAEDLTDHLLDQSIKARYMHSDIGTL 502

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+R+LR GKFDVLVGINLLREGLD+PE  LVAILDADKEGFLR   SLIQTIGRAA
Sbjct: 503 ERVDILRELRQGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRHYRSLIQTIGRAA 562

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN + +VI+YAD  T S+ LAI ET RRR  Q+ +N+KH I PQ++K+ I +++D +  E
Sbjct: 563 RNAHGQVIMYADKRTDSMDLAITETQRRRALQMAYNEKHGITPQTIKKDINDIMDYVQQE 622

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
               +   I+ +  SLS+ +    + ++ + M  A+ +L+F+ AA +RD+I RLKS    
Sbjct: 623 AGDVSAEQINQELASLSRGEVMRVVAAMEEDMRQASADLDFDRAASLRDQIVRLKSQVEG 682

Query: 800 QGLDD 804
           Q  +D
Sbjct: 683 QSEED 687


>gi|317968351|ref|ZP_07969741.1| excinuclease ABC subunit B [Synechococcus sp. CB0205]
          Length = 669

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/667 (52%), Positives = 455/667 (68%), Gaps = 6/667 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++   Y P GDQP AI  L+ G+ S E+ Q LLG TG+GKTFT+A VI    RPA+V
Sbjct: 3   NPFEIHAPYEPKGDQPEAIKALVAGVESGERYQTLLGATGTGKTFTIANVIAKTGRPALV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +
Sbjct: 63  LAHNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDML 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G+++  +  L  LV  QY 
Sbjct: 123 RHSATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGETLNLRSSLRDLVNNQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ I RG FRV GD +EI P++ ED   R+ +FG+++E I    P TG+ ++++E+I 
Sbjct: 183 RNDLEISRGRFRVRGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSLESIS 241

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY   H+VTP+  L  A+K I+ EL+ RL  L ++G+LLEAQRLEQR TYDLEMLE  G 
Sbjct: 242 IYPAKHFVTPKERLEDAIKAIRSELRERLDVLNEQGKLLEAQRLEQRTTYDLEMLEQVGY 301

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  +ENY+R+L GR  G PP  L +Y PED LL VDESHVT  Q+  MY GD  RK  L 
Sbjct: 302 CNGVENYARHLAGREAGTPPECLIDYFPEDWLLVVDESHVTCSQLQAMYNGDQARKGVLI 361

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPS  DNRPL+ +E+      +I VSATPG WEL+Q    +V+Q+IRPTG++DP 
Sbjct: 362 EHGFRLPSAADNRPLKGDEFWEKARQSIFVSATPGDWELKQSDSEVVQQVIRPTGVLDPI 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R    QV+D+  EI   A++  R+L+T LTKRMAEDLT+YL E  +RVRY+HSE+ +
Sbjct: 422 VEVRPTDGQVDDLLGEIRTRAEKKERVLVTTLTKRMAEDLTDYLAENGVRVRYLHSEIHS 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ERIEII+DLR G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRA
Sbjct: 482 IERIEIIQDLRNGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL- 737
           AR+V    +LYAD +T S+  AI ET RRR  Q  +N+KH I P    ++    I   L 
Sbjct: 542 ARHVEGVALLYADNLTDSMAKAISETERRRAIQQAYNEKHGITPTPAGKRGGNSILAFLE 601

Query: 738 ----LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
               L D      +  A+   +        ++ L  +M  AA NL+FEEAA +RD IK L
Sbjct: 602 VSRRLNDEQLEQATEQAEHNDVPLDALPELIQQLEDKMKSAAKNLDFEEAANLRDRIKSL 661

Query: 794 KSSPYFQ 800
           +     +
Sbjct: 662 RQKLVGK 668


>gi|323360118|ref|YP_004226514.1| helicase subunit of the DNA excision repair complex [Microbacterium
           testaceum StLB037]
 gi|323276489|dbj|BAJ76634.1| helicase subunit of the DNA excision repair complex [Microbacterium
           testaceum StLB037]
          Length = 689

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/679 (50%), Positives = 476/679 (70%), Gaps = 18/679 (2%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           ++ +  F++ ++Y PSGDQP AIA L   I++ E   +LLG TG+GK+ T A ++E +QR
Sbjct: 4   TRSVRPFEVISEYSPSGDQPQAIADLAARINAGETDVVLLGATGTGKSATTAWLVEQVQR 63

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+A NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN +
Sbjct: 64  PTLVLAHNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINAE 123

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++R+RHS T SLL R D +VVS+VSCIYG+G+ E Y + +V L++G+  ++  L+   + 
Sbjct: 124 VERLRHSTTNSLLSRRDVVVVSTVSCIYGLGAPEEYLRAMVALQVGERYDRDALIRKFIS 183

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D+   RG FRV GD+IEI P + E+ A R+ MFG++IE +   +PLTG  I  +
Sbjct: 184 MQYNRNDVDFSRGNFRVRGDTIEIIPVY-EEYAIRIEMFGDEIEALYTLHPLTGDVIEKM 242

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           +++ I+  SHYV    T+  A+  I+ EL+ RL E E +G+LLEAQRL  R T+DLEML+
Sbjct: 243 DSVPIFPASHYVAGTETVQRAIGTIEHELEHRLKEFESQGKLLEAQRLRMRTTFDLEMLQ 302

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSR++ GR  GEPP TL ++ P+D LL +DESHVT+PQI  MY GD  RK
Sbjct: 303 QLGFCSGIENYSRHMDGRVAGEPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRK 362

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL E+GFRLPS MDNRPLR++E+      T+ +SATPG +E+    G +VEQIIRPTGL
Sbjct: 363 RTLVEHGFRLPSAMDNRPLRWDEFKERIGQTVYLSATPGRYEMGIADG-VVEQIIRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           VDP + ++ ++ Q++D+ +EI +  ++  R+L+T LTK+MAE+LT++L E  +RVRY+HS
Sbjct: 422 VDPEIIVKPSKGQIDDLLEEIRVRVERDERVLVTTLTKKMAEELTDFLGEHGVRVRYLHS 481

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +V TL R+E++ +LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQT
Sbjct: 482 DVDTLRRVELLTELRAGVYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQT 541

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARNV+ +V +YAD IT S++ AIDET RRREKQ+ +NK+H I+PQ +++KI ++ +
Sbjct: 542 IGRAARNVSGEVHMYADKITDSMRNAIDETERRREKQVAYNKEHGIDPQPLRKKIADITE 601

Query: 735 PILLEDAATTNISIDAQQLSLSK----------------KKGKAHLKSLRKQMHLAADNL 778
            +  E   T  +     +    K                 + ++ +  L +QM  AA  L
Sbjct: 602 VLNREATDTKKLLARNDKAGKGKSPTPQLRRTGIAAEGADQLESTIADLTQQMLAAAAEL 661

Query: 779 NFEEAARIRDEIKRLKSSP 797
            FE A R+RDE++ LK   
Sbjct: 662 KFELAGRLRDEVQDLKKEL 680


>gi|186680993|ref|YP_001864189.1| excinuclease ABC subunit B [Nostoc punctiforme PCC 73102]
 gi|186463445|gb|ACC79246.1| excinuclease ABC, B subunit [Nostoc punctiforme PCC 73102]
          Length = 683

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/666 (53%), Positives = 460/666 (69%), Gaps = 4/666 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F +Q  + P+GDQP AIAQL   I S  + Q LLG TG+GKTF++A VIE + +P +
Sbjct: 19  MTEFCLQAPFSPTGDQPQAIAQLTASIQSGNRYQTLLGATGTGKTFSVAAVIEKIGKPTL 78

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E ++FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK ++IN++ID 
Sbjct: 79  VLAHNKTLAAQLCNELRDFFPNNAVEYFVSYYDYYQPEAYIPVTDTYIEKTAAINDEIDM 138

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  + L+IG  V Q+++L  L   QY
Sbjct: 139 LRHSATRSLFERRDVIVVASISCIYGLGMPAEYLKAAIPLQIGMEVNQRQILRDLANVQY 198

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ ++++E +
Sbjct: 199 SRNDIEMGRGKFRVRGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEILKSLEAV 257

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP   L  A   I  ELK + ++LE+ G+LLEAQR++QR  YDLEML   G
Sbjct: 258 NIYPARHFVTPEERLEVACHDIAAELKQQKLDLEQAGKLLEAQRIDQRTRYDLEMLREVG 317

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  G+PP  L +Y P+D LL +DESHVT+PQI GMY GD  RK  L
Sbjct: 318 YCNGVENYSRHLAGRQAGDPPECLIDYFPKDWLLIIDESHVTVPQIRGMYNGDQARKKVL 377

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+ EE+       I VSATPG+WE+E  +  ++EQ+IRPTG+VDP
Sbjct: 378 IEHGFRLPSAADNRPLKAEEFWQKVNQCIFVSATPGTWEIEVSEDHVIEQVIRPTGVVDP 437

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    Q++D+  EI   A +  R+L+T LTKRMAEDLTEYL +R+IRVRY+HSE+ 
Sbjct: 438 EISVRPTEGQIDDLLGEIKDRADRHERVLITTLTKRMAEDLTEYLQDRSIRVRYLHSEIT 497

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEI+++LR GKFDVLVG+NLLREGLD+PE  LVAI+DADKEGFLR++ SLIQTIGR
Sbjct: 498 SIERIEILQNLREGKFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRTERSLIQTIGR 557

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V  + ILYAD +T S+  AIDET RRR  Q  HN+ H I PQ + +K    I   L
Sbjct: 558 AARHVQGQAILYADNMTGSMIKAIDETDRRRGIQTAHNRLHGITPQPIVKKSSNAILAFL 617

Query: 738 LEDA---ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  AT    +D     L  ++    +  L  QM  AA  L FEEA ++RD IK L+
Sbjct: 618 DVSRRLNATDLKVVDEHIDELPLEQIPGLITLLEAQMKEAAKKLEFEEAGKLRDRIKHLR 677

Query: 795 SSPYFQ 800
                +
Sbjct: 678 DKMLGR 683


>gi|302546273|ref|ZP_07298615.1| excinuclease ABC subunit B [Streptomyces hygroscopicus ATCC 53653]
 gi|302463891|gb|EFL26984.1| excinuclease ABC subunit B [Streptomyces himastatinicus ATCC 53653]
          Length = 720

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/704 (49%), Positives = 477/704 (67%), Gaps = 37/704 (5%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             +    + +  F++ + Y PSGDQP AIA L + I   EK  +LLG TG+GK+ T A +
Sbjct: 10  RPVTQIERKVAPFEVVSPYTPSGDQPTAIADLDRRISGGEKDVVLLGATGTGKSATTAWM 69

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 70  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 129

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V LK+G+  ++ +L
Sbjct: 130 SSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGEETDRDQL 189

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG
Sbjct: 190 LRRFVDIQYARNDMAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTG 248

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I + + + ++  SHYV     +  A+  I+ EL+  L  LEK+G+LLEAQRL  R TY
Sbjct: 249 EVISDDQELYVFPASHYVAGPERMEKAIAGIEAELEQTLARLEKQGKLLEAQRLRMRTTY 308

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G+C  IENYS ++ GR  G PP TL +Y PED LL +DESHVT+PQI  MY 
Sbjct: 309 DIEMMRQIGTCSGIENYSLHIDGREAGSPPHTLLDYFPEDFLLVIDESHVTVPQIGAMYE 368

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS +DNRPL++EE+      T+ +SATPG++E+ +  G  VEQI
Sbjct: 369 GDASRKRTLIEHGFRLPSALDNRPLKWEEFQKRIGQTVYLSATPGTYEMSRGDG-FVEQI 427

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y+ E  I+
Sbjct: 428 IRPTGLVDPEVVVKPTDGQIDDLIHEIRTRTEKDERVLVTTLTKKMAEDLTDYMLELGIQ 487

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 488 VRYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 547

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD +T +++ AIDET RRREKQ+  N+K+ I+PQ +++K
Sbjct: 548 TSLIQTIGRAARNVSGQVHMYADKVTPAMEKAIDETNRRREKQIAFNEKNGIDPQPLRKK 607

Query: 729 IMEVIDPILLEDAATTNI-----------------------------------SIDAQQL 753
           I +++  +  E+  T  +                                   + D +  
Sbjct: 608 IGDIVATLAREEIDTKELLETGYRKSADQGKGAGKGQKAPMPALASHKAGGKGAKDGELT 667

Query: 754 SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                +    ++ +  +M  AA  L FE AAR+RDE+  LK   
Sbjct: 668 DRPAAELAELIEEMTDRMKAAAAELQFEVAARLRDEVGELKKEL 711


>gi|170760480|ref|YP_001788716.1| excinuclease ABC subunit B [Clostridium botulinum A3 str. Loch
           Maree]
 gi|238688800|sp|B1L280|UVRB_CLOBM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|169407469|gb|ACA55880.1| excinuclease ABC, B subunit [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 662

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/657 (52%), Positives = 465/657 (70%), Gaps = 2/657 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + ++P+GDQP AI  + KGI   EK Q L+GVTGSGKTFTMA +IE +Q+P +
Sbjct: 1   MNQFKVISKFNPTGDQPKAIKSIAKGIEKGEKFQTLIGVTGSGKTFTMANIIEKVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF+ FFP+NAVEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID+
Sbjct: 61  VLAHNKTLAAQLCSEFREFFPNNAVEYFVSYYDYYQPEAYVAQSDTYIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  LV+ QY
Sbjct: 121 LRHSATSALFERKDVIIVASVSCIYGLGNPEEYKKLTISLREGMEKDRDEIIKKLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD ++IFP+     A R+  FG++I+ I EF  LTG+ I  ++ I
Sbjct: 181 ERNDIDFSRGTFRVKGDVLDIFPASSSSKAVRIEFFGDEIDRIKEFDVLTGETITKLKHI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+ T +  L  A+K I+EEL+ R+ EL  + ++LEAQRL+QR  +D+EM+   G
Sbjct: 241 SIFPASHFATSKDRLEIAIKNIEEELEERVKELVSQDKILEAQRLKQRTNFDIEMMREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L GR  G PP TL +Y P+D LLF+DESHVT+PQ+  M  GD  RK +L
Sbjct: 301 YCTGIENYSRVLDGRAKGTPPQTLLDYFPQDFLLFIDESHVTLPQVKAMQAGDKSRKDSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP   DNRPL F+E+       + VSATP  +ELE       EQ+IRPTGL+DP
Sbjct: 361 VEYGFRLPCAYDNRPLTFKEFENKLNQVVFVSATPAKYELEYSAN-TAEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++  + Q++D+Y  I    ++G RIL+T LTK+MAEDLT+YL E  ++ RY+HS++ 
Sbjct: 420 EIIVKPVKGQIDDLYTSIQETIKRGFRILVTTLTKKMAEDLTDYLKEMGVKTRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++II DLR G+F VLVGINLLREGLDIPE  LV ILDADKEGFLRS+TSLIQT+GR
Sbjct: 480 TIERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+Y D ITKS++  I ET RRR+ Q+EHN+KH I P+++ + I EVI    
Sbjct: 540 AARNSESKVIMYGDVITKSMEKTIRETNRRRKIQMEHNEKHGIVPKTIIKDIREVIQISD 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + +      +++    S +       ++   ++M  AA NL FE+AA +RD I +LK
Sbjct: 600 IAEERKEYDNLNEALKSYN-NDIDKLIEKYEEEMKEAAQNLQFEKAAHLRDVIYKLK 655


>gi|311740505|ref|ZP_07714332.1| excision endonuclease subunit UvrB [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304025|gb|EFQ80101.1| excision endonuclease subunit UvrB [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 697

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/685 (52%), Positives = 483/685 (70%), Gaps = 9/685 (1%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
               ++   +    FQ+ ++Y P+GDQPAAIA+L + ++  E+  +L+G TG+GK+ T A
Sbjct: 14  EHRVVSEVERTPGEFQVVSEYEPAGDQPAAIAELNERLNRDERDVVLMGATGTGKSATAA 73

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            +IE  QRP +VMAPNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIE
Sbjct: 74  WLIEKQQRPTLVMAPNKTLAAQLANELRQLLPHNAVEYFVSYYDYYQPEAYIAQTDTYIE 133

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+SSINE ++R+RHSAT +LL R D +VVSSVSCIYG+G+ +SY    V + + + +++ 
Sbjct: 134 KDSSINEDVERLRHSATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVIISVDEELDRD 193

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
             L  LV  QY+R D+G  RGTFR  GD+++I P++ E+ A R+  FG+DI+ +   +P+
Sbjct: 194 RFLRLLVDIQYERNDVGFTRGTFRAKGDTVDIIPAY-EERAVRIEFFGDDIDSLYYIHPV 252

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG  I  V+ ++I+  +HYV     +  A+  IKEEL  RL +LE  G+LLEAQRL  R 
Sbjct: 253 TGDVIEEVDEVRIFPATHYVAGPERMEKAVAAIKEELAERLEDLENRGKLLEAQRLRMRT 312

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
            YDLEM+E  G C  IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM
Sbjct: 313 EYDLEMIEQVGFCSGIENYSRHVDGRPAGSAPATLLDYFPEDFLTIIDESHVTVPQIGGM 372

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           + GD  RK  L E+GFRLPS +DNRPL F+E+      T+ +SATPG +EL    G  VE
Sbjct: 373 FEGDMSRKRNLVEFGFRLPSAVDNRPLTFDEFEQRVGQTVYMSATPGDFELTSSDGEYVE 432

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q+IRPTGLVDP V ++  + Q++D+ DE+     Q  R+L+T LTKRMAEDLT+YL E+ 
Sbjct: 433 QVIRPTGLVDPKVTVKPTKGQIDDLIDEVRTRISQQERVLVTTLTKRMAEDLTDYLLEQG 492

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           I+VRY+HS++ TL+R+E++R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR
Sbjct: 493 IKVRYLHSDIDTLQRVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLR 552

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S TSLIQTIGRAARNV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +NK+H I+PQ ++
Sbjct: 553 STTSLIQTIGRAARNVSGEVIMYADKITDSMQEAIEETERRREKQIAYNKEHGIDPQPLR 612

Query: 727 EKIMEVIDPILL---EDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNF 780
           +KI +++D +     E+ A ++ S   ++    S++  + +A +  L  QM  AA  L F
Sbjct: 613 KKIADILDQVYEDGGEEEANSDPSAVVEKRDISSMATDEVQALIDDLSAQMGAAARELKF 672

Query: 781 EEAARIRDEIKRLKSSPYFQGLDDS 805
           E A R+RDEI  LK     +GL ++
Sbjct: 673 ELAGRLRDEIADLKKE--LRGLKEA 695


>gi|161507208|ref|YP_001577162.1| excinuclease ABC subunit B [Lactobacillus helveticus DPC 4571]
 gi|160348197|gb|ABX26871.1| Excinuclease ABC (subunit B) [Lactobacillus helveticus DPC 4571]
          Length = 682

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/659 (50%), Positives = 463/659 (70%), Gaps = 4/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI +L  G     K Q+L G TG+GKTFTMA +I  + +P +V+ 
Sbjct: 10  FELVSKFKPAGDQEQAIDKLTAGFKKGYKEQILEGATGTGKTFTMANIIANLNKPTLVIT 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK+FFPHNAVEYFVSYYDYYQPEAYVP++DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L+ERND IVV+SVS IYG+G  + Y++ ++ +  G   ++  LL  LV  QY R 
Sbjct: 130 ATTSALMERNDVIVVASVSSIYGLGDPKEYARSVLMIHEGQEYDRNMLLRDLVNLQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+   + A+R+  FG++I+ I E   LTG+ I   E+I ++
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPAGNSNHAYRIEFFGDEIDRIVEIDSLTGEVIGERESISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H+VT    L  A+K I +E+K+++ + E EG+LLEA+R++QR TYD+EM+   G   
Sbjct: 250 PATHFVTNDDQLRRALKAISKEMKVQVKKFEGEGKLLEAERIKQRTTYDMEMMSEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L  +DESH T+P+I  MY GD +RK TL +Y
Sbjct: 310 GIENYSRHMEGRKAGEPPYTLLDFFPDDFLTLIDESHATMPEIRAMYNGDRNRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +ELE+     VEQIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLKLSEFEKHVHQILYVSATPGDYELERT-NHKVEQIIRPTGLLDPKIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN       R+ +T LTK+MAEDLT+YL +  I+V+Y+HS++KTLE
Sbjct: 429 VRPIEGQIDDLVGEINKRIDCNERVFVTTLTKKMAEDLTDYLKDLGIKVQYLHSDIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++I+RDLRLGKFDVL+GINLLREG+D+PE  LVAILDADKEGFLR+   L+QT+GRAAR
Sbjct: 489 RMKILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLVQTMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPIL 737
           N N +VI+YADTIT S++ AI+ T RRR+ Q E NK++ I P+++ + + +VI    P  
Sbjct: 549 NANGEVIMYADTITDSMRAAINATKRRRKIQEEFNKEYGITPKTIIKPVQDVISITKPSS 608

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +    ++   D     L+  + K  +K+L++QM  AA  L+FEEAA +RD I  L+ S
Sbjct: 609 GDRDKKSDSFADLNFDELTASQKKTMIKNLQEQMKEAAKKLDFEEAANLRDAIIDLQKS 667


>gi|302518411|ref|ZP_07270753.1| excinuclease ABC, B subunit [Streptomyces sp. SPB78]
 gi|302427306|gb|EFK99121.1| excinuclease ABC, B subunit [Streptomyces sp. SPB78]
          Length = 717

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/709 (49%), Positives = 478/709 (67%), Gaps = 42/709 (5%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             +    + +  F++ + Y PSGDQP AIA+L K +   EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVTQIERTVAPFEVVSPYSPSGDQPTAIAELEKRVKGGEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IERLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V LK+GD +++ EL
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGDELDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG
Sbjct: 182 LRRFVDIQYTRNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSLLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I + + + ++  SHY+     +  A+  I++EL++RL ELEK+G+LLEAQRL  R TY
Sbjct: 241 EVISDDQQVYVFPASHYIAGPERMERAINGIEKELEVRLAELEKQGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EML   G+C  +ENYS +   R PG PP TL +Y PED LL +DESHVT+PQI  MY 
Sbjct: 301 DIEMLRQIGTCSGVENYSMHFDDREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL++EE+       + +SATPG++EL +  G  VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLKWEEFQKRIGQAVYLSATPGNYELSRSDG-FVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I 
Sbjct: 420 IRPTGLVDPEIVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMAEDLTDYFLELGIN 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD IT +++ AIDET RRR KQ+ +N +  I+PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADKITPAMERAIDETNRRRAKQIAYNTERGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKK------------------------------ 758
           I +++  I  E+  T ++     + +   K                              
Sbjct: 600 INDIVASIAREEVDTDSLLGTGYRQAKEGKGAKTPVPALGGKATAESGKAAKGKAKKGKA 659

Query: 759 ----------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                          ++ +  +M  AA +L FE AAR+RDE+  +K   
Sbjct: 660 ATVPTDQPGAALAQQIEEMTDRMRAAAADLQFEVAARLRDEVSEMKKEL 708


>gi|319949850|ref|ZP_08023863.1| excinuclease ABC subunit B [Dietzia cinnamea P4]
 gi|319436489|gb|EFV91596.1| excinuclease ABC subunit B [Dietzia cinnamea P4]
          Length = 709

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/701 (48%), Positives = 497/701 (70%), Gaps = 11/701 (1%)

Query: 113 DNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQL 172
           D+ +  +  + +      I +  +    F++ +++ PSGDQP AIA+L + +   E+  +
Sbjct: 9   DDGIPADPTVLSYSEFRPIGDVERSTNRFEVVSEFTPSGDQPTAIAELSERLARGERDVV 68

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           LLG TG+GK+ T A +IE +QRP +VMAPNK LAAQL +E +   P+NAVEYFVSYYDYY
Sbjct: 69  LLGATGTGKSATTAWLIEKVQRPTLVMAPNKTLAAQLANELREMLPNNAVEYFVSYYDYY 128

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           QPEAY+ +TDT+IEK+SSIN+ ++R+RHSAT SLL R D +VVSSVSCIYG+G+ +SY  
Sbjct: 129 QPEAYIAQTDTFIEKDSSINDDVERLRHSATSSLLSRRDVVVVSSVSCIYGLGTPQSYLD 188

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             V L +G  V++ +LL  LV  QY+R D+ + RGTFR  GD+++I P++ E++A R+  
Sbjct: 189 RSVSLAVGQEVDRDQLLRLLVDVQYERNDVSMTRGTFRAKGDTVDIIPTY-EELAVRIEF 247

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG++++ +   +PLTG  +R V+ ++I+  +HYV     +  A+  I+EEL++RL ELE 
Sbjct: 248 FGDEVDALYYIHPLTGDVVRRVDEVRIFPATHYVAGPERMAKAIASIEEELEVRLAELEN 307

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           +G+LLEAQRL  R +YD+EM++  G C  IENYSR++ GR  G  P TL +Y PED L  
Sbjct: 308 QGKLLEAQRLRMRTSYDIEMMQQVGFCSGIENYSRHIDGRPAGSAPATLIDYFPEDFLTV 367

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           +DESHVT+PQI  MY GD  RK  L ++GFRLPS +DNRPL +EE++     T+ +SATP
Sbjct: 368 IDESHVTVPQIGAMYEGDASRKRNLVDFGFRLPSALDNRPLTWEEFSDRVGQTVYLSATP 427

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
           G +E+ +  G  VEQ+IRPTGLVDP + ++  + Q++D+  EI   A++  R+L+T LTK
Sbjct: 428 GPYEMGRTGGEFVEQVIRPTGLVDPKIVVKPTKGQIDDLIGEIRARAERDERVLVTTLTK 487

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           +M+EDLT+YL E  +RVRY+HSE+ TL+R+E++RDLR G++DVLVGINLLREGLD+PE  
Sbjct: 488 KMSEDLTDYLLELGVRVRYLHSEIDTLQRVELLRDLRRGEYDVLVGINLLREGLDLPEVS 547

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           LVAILDADKEGFLRS TSLIQTIGRAARNV+ +V +YADTIT S++ A++ET RRREKQ+
Sbjct: 548 LVAILDADKEGFLRSSTSLIQTIGRAARNVSGEVHMYADTITDSMRYAMEETERRREKQI 607

Query: 713 EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ--------QLSLSKKKGKAHL 764
            +N +H I+PQ +++KI +++D +  E + +T+ +   +          +  +K+ +  +
Sbjct: 608 AYNTEHGIDPQPLRKKIADILDRVGEERSDSTDGADRPELLGARAVGDAARPRKELEKLI 667

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           + + +QM  AA +L FE A R+RDEI  L+     +G+ ++
Sbjct: 668 EEMTEQMMSAATDLRFELAGRLRDEIAELRKE--LKGMREA 706


>gi|320354361|ref|YP_004195700.1| Excinuclease ABC subunit B [Desulfobulbus propionicus DSM 2032]
 gi|320122863|gb|ADW18409.1| Excinuclease ABC subunit B [Desulfobulbus propionicus DSM 2032]
          Length = 678

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/665 (53%), Positives = 470/665 (70%), Gaps = 9/665 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +D+ PSGDQPAAI +L   + +  + Q+LLGVTGSGKTFTMA+V+  +QRP +V
Sbjct: 7   NPFEIVSDFTPSGDQPAAIDRLTANLEAGVRDQILLGVTGSGKTFTMAQVVARVQRPTLV 66

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQL++EF+  FPHNAVEYFVSYYDYYQPEAY+P +DTYIEK+SSIN+ ID++
Sbjct: 67  MAPNKTLAAQLFAEFRELFPHNAVEYFVSYYDYYQPEAYIPASDTYIEKDSSINDAIDKL 126

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSATRSLL R D ++V+SVSCIYG+GS + Y  M + L++GD    +E+   L    Y+
Sbjct: 127 RHSATRSLLTRRDVLIVASVSCIYGLGSPDEYKNMHLFLRVGDDYPMEEVQRRLAFMLYE 186

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +    RGTFRV GD I+IFP H E+ A RV  FG+ I+ +S   PL G  + +V  + 
Sbjct: 187 RNEFSFHRGTFRVRGDVIDIFPVHEEEHAVRVEFFGDTIDSLSIIDPLRGVVVADVAEMT 246

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++  SH+VT +  L +AM+ I++EL++RL EL+ + RL+EAQRLEQR  +DLEM+   G 
Sbjct: 247 VFPGSHFVTSQDNLKSAMRSIQDELQLRLSELQADNRLVEAQRLEQRTLFDLEMIAELGY 306

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+LTG+ PG PPP L +Y P+D LL +DESH+ +PQI GM+ GD  RK TL 
Sbjct: 307 CNGIENYSRHLTGKEPGAPPPNLLDYFPDDYLLIIDESHIGVPQIGGMFNGDRSRKQTLV 366

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            YGFRLPS +DNRPLRF+E+       + VSATPG +EL +    IVEQ+IRPTGL+DP 
Sbjct: 367 NYGFRLPSALDNRPLRFDEFEQRIRQVVYVSATPGPYELNKAGEHIVEQLIRPTGLLDPR 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R A TQV+D+ +EI + A++   +L+T LTKRMAEDLT+Y  E  IRVRY+HS++KT
Sbjct: 427 IEVRPAATQVDDLLEEIRVRAERNQAVLVTTLTKRMAEDLTQYYEELGIRVRYLHSDIKT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER+E+IR+LR  ++DVL+GINLLREGLDIPE  LVA+LDADKEGFLRS+ SL+QT GRA
Sbjct: 487 LERVELIRELRHREYDVLIGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLVQTCGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----- 733
           ARN    VILYAD IT S++  IDET RRR  Q  +N++  I PQ+V  +I + +     
Sbjct: 547 ARNAEGTVILYADKITPSMRYTIDETNRRRAIQEAYNRERGIVPQTVISEIKDAMAQHLR 606

Query: 734 ----DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                P    +A     + + + +  S  +    +  L K+M  AA  L FEEAA  RD 
Sbjct: 607 AAGWQPADEYEAPGLLTAAEPEVVYHSVDELHREIAELEKKMQEAAKQLAFEEAAGYRDR 666

Query: 790 IKRLK 794
           I+ LK
Sbjct: 667 IRELK 671


>gi|328952008|ref|YP_004369342.1| UvrABC system protein B [Desulfobacca acetoxidans DSM 11109]
 gi|328452332|gb|AEB08161.1| UvrABC system protein B [Desulfobacca acetoxidans DSM 11109]
          Length = 663

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/655 (55%), Positives = 467/655 (71%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + + P GDQP AI QL  GI +    Q+LLGVTGSGKTFT+A VI  +  P +V+A
Sbjct: 5   FQLVSPFQPQGDQPQAIRQLAAGIKTGTAHQVLLGVTGSGKTFTVANVIAQVNLPTLVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY EF+ FFPHNAVEYFVSYYDYYQPEAY+P+ D YIEK+SSINE IDRMRH
Sbjct: 65  PNKTLAAQLYGEFREFFPHNAVEYFVSYYDYYQPEAYIPQADLYIEKDSSINEAIDRMRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL+R D I+V+SVSCIYG+G+ E+Y  M++ L+ G    ++E+ + LV+  Y+R 
Sbjct: 125 SATRSLLDRQDVIIVASVSCIYGLGAPEAYQGMLLYLEAGMIKSREEVQAKLVEILYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FR  GD +EIFP++ ED A R+  +G+ +E I E  PL  Q  + +E I IY
Sbjct: 185 DIDFHRGVFRARGDRLEIFPAYEEDRAIRIDFWGDVVESIQEIDPLRRQSQKKLEKIAIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A+  I+ EL  RL   + +G+LLEAQRL +R  +DLEML   G C 
Sbjct: 245 PASHYVTPDSRRQEALVAIEAELHERLAWFKNQGKLLEAQRLWERTRFDLEMLREMGFCH 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGE PPTL +Y+P  SL+ +DESH+++PQ+ GMY GD  RK TL EY
Sbjct: 305 GIENYSRHLTGRQPGEAPPTLLDYLPRKSLVVIDESHISVPQLRGMYNGDRSRKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       I VSATPG +ELE+ QG +VEQI+RPTGL+DP + 
Sbjct: 365 GFRLPSALDNRPLNFSEFEGRVQQVIYVSATPGPYELEKAQGRVVEQIVRPTGLIDPKIT 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ A  QV+D+  EI +   +  R+L+T LTKR+AEDLTEY     ++VRY+HS++ TLE
Sbjct: 425 VKPATNQVDDLLGEIRIRLGRQERVLVTTLTKRLAEDLTEYYQNLGLKVRYLHSDITTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG F+VL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT GRAAR
Sbjct: 485 RMEIIRDLRLGVFEVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTCGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +VN +V LYAD +T S+Q A+ ET RRR++Q  +N++H I P ++++ I +++  +  +D
Sbjct: 545 HVNGEVFLYADRVTPSMQAALKETQRRRQRQRAYNRQHGITPTTIQKGIQDILASVYEKD 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T   + +     L  +    HL  L+K+M  AA  L FE AA +RD IK L+S
Sbjct: 605 YVTVAAAQEEPAPYLLPQDIPRHLARLKKEMQAAAKKLEFERAAELRDRIKSLES 659


>gi|315604240|ref|ZP_07879306.1| excision endonuclease subunit UvrB [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313946|gb|EFU61997.1| excision endonuclease subunit UvrB [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 696

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/685 (50%), Positives = 473/685 (69%), Gaps = 24/685 (3%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           ++    F++ + Y PSGDQP AI +L   I   E+  +L+G TG+GK+ T A +IE +QR
Sbjct: 7   TRQNKPFEVISPYTPSGDQPKAIRELAARIRDGEQDVVLMGATGTGKSATTAWLIEELQR 66

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PA+++ PNK LAAQL +EF+   P NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++
Sbjct: 67  PALILEPNKTLAAQLAAEFRALLPSNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDE 126

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++R+RHSAT SLL R D +VVSSVSCIYG+G+ E Y   +++L  G  V++  LL   V 
Sbjct: 127 VERLRHSATNSLLTRRDTVVVSSVSCIYGLGTPEEYVARMIELSRGMVVDRDALLRRFVA 186

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D+   RGTFRV GD+IEI P + E++A R+ MFG++I+ ++  +PLTG  I  V
Sbjct: 187 MQYVRNDMAFTRGTFRVRGDTIEIIPVY-EELAIRIEMFGDEIDSLAVLHPLTGDVISEV 245

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           E   ++  SHYV     +  A+  I++EL+ RL  L  + +L+E QRL  R T+DLEML+
Sbjct: 246 EHTYLFPASHYVAGEERMKKAIASIEDELEERLAWLHAQNKLVEEQRLRMRTTFDLEMLK 305

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             GSC  +ENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI  M+ GD  RK
Sbjct: 306 EIGSCSGVENYSRHIDGRGPGTPPHTLLDYFPEDFLLIIDESHVTVPQIGAMFEGDMSRK 365

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS MDNRPL+++E+      T+ +SATPG +EL++  G +VEQIIRPTGL
Sbjct: 366 RTLVDYGFRLPSAMDNRPLKWDEFTARIGQTVYLSATPGPYELDRSDG-VVEQIIRPTGL 424

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           VDP V ++  + Q++D+ +++ L  ++  R+L+T LTK+MAE+LT YL ER ++V Y+HS
Sbjct: 425 VDPLVVVKPTQGQIDDLLEQVRLRVERDERVLVTTLTKKMAEELTTYLAERGVKVEYLHS 484

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +V TL R+E++R+LRLG FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLIQT
Sbjct: 485 DVDTLRRVELLRELRLGTFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQT 544

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARNV+ +V +YAD IT S++ AI ET RRRE Q+ +N++H I+PQ +++KI +V D
Sbjct: 545 IGRAARNVSGEVHMYADNITDSMREAISETMRRREIQIAYNEEHGIDPQPLRKKISDVTD 604

Query: 735 PILLEDAATTNISIDAQQLSLSKK----------------------KGKAHLKSLRKQMH 772
            +  E   T  +     +   S K                      +    ++ L  QM 
Sbjct: 605 MLAREQVDTQTLLEGGYRKEKSAKERGESRAVGAGGAHSLGARAESELADLIEELSAQMM 664

Query: 773 LAADNLNFEEAARIRDEIKRLKSSP 797
            AA++L FE AAR+RDEI+ LK   
Sbjct: 665 TAAEHLQFEVAARLRDEIEDLKKEL 689


>gi|153956169|ref|YP_001396934.1| excinuclease ABC subunit B [Clostridium kluyveri DSM 555]
 gi|219856494|ref|YP_002473616.1| hypothetical protein CKR_3151 [Clostridium kluyveri NBRC 12016]
 gi|146349027|gb|EDK35563.1| UvrB [Clostridium kluyveri DSM 555]
 gi|219570218|dbj|BAH08202.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 664

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/651 (53%), Positives = 467/651 (71%), Gaps = 2/651 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + P+GDQP AI  +   I   +K Q LLGVTGSGKTFTMA +IE +Q+P +
Sbjct: 1   MGKFKVHSQFSPTGDQPQAIESISSRIFKGDKFQTLLGVTGSGKTFTMANIIEKVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAY+ +TDTYIEK++SIN++ID+
Sbjct: 61  VLAHNKTLAAQLCSEFKEFFPENCVEYFVSYYDYYQPEAYIAQTDTYIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +LLER D IVV+SVSCIYG+G+ E Y ++ + L+ G    + E+L  LV+ QY
Sbjct: 121 LRHSATSALLERRDVIVVASVSCIYGLGNPEEYKKLTLSLRQGMIKNRDEVLKKLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+  IRGTFRV GD+++IFP+   +   RV  FG++I++I EF  LTG  +   + +
Sbjct: 181 ERNDLNFIRGTFRVKGDTVDIFPASSAERGIRVEFFGDEIDKIREFDVLTGSTLGIRKHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+ T R  L  ++  I+ EL+  L +L  E +LLEAQRL+QR  +D+EM+   G
Sbjct: 241 SIFPASHFATSREKLEISIGKIEAELEETLKKLIAEDKLLEAQRLKQRTNFDIEMMREIG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L GR+ G PP TL +Y P+D LLF+DESHVT+PQ+  MY GD  RK +L
Sbjct: 301 YCSGIENYSRILDGRSKGSPPQTLIDYFPKDFLLFIDESHVTLPQVKAMYAGDRSRKESL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL+F+E+       + VSATP  +EL   +  I EQI+RPTGL+DP
Sbjct: 361 VEYGFRLPSAFDNRPLKFQEFEKKLNQVVFVSATPAEYELNNSEN-IAEQILRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++  + Q++D+Y+ I     +G R+L+T LTK+MAEDLTEY  + +++ RY+HS + 
Sbjct: 420 EILVKPIKGQIDDLYNNIQETIHRGYRVLVTTLTKKMAEDLTEYFKDMDVKTRYLHSSIT 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T++R++IIRDLR G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 480 TIDRMKIIRDLRKGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSEKSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+YADTIT S+  AI ET RRR+ Q+E+NKK+ I P+++ + I E+I+  +
Sbjct: 540 AARNSESKVIMYADTITNSMDKAISETKRRRQIQIEYNKKNGIKPRTINKAIREIIESTM 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           + +   T  +++ + +    KK +  +K   KQM  AA  L FEEAA++RD
Sbjct: 600 ILEEEETYNTLE-EAVKADHKKVEELIKEYEKQMAAAAKELRFEEAAKLRD 649


>gi|330469191|ref|YP_004406934.1| excinuclease ABC subunit B [Verrucosispora maris AB-18-032]
 gi|328812162|gb|AEB46334.1| excinuclease ABC subunit B [Verrucosispora maris AB-18-032]
          Length = 702

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/689 (50%), Positives = 469/689 (68%), Gaps = 29/689 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQPAAI +L + +   ++  +LLG TG+GK+ T A +IE MQRP +V+A
Sbjct: 12  FKVISEFQPAGDQPAAIDELERRVRRGDRHTVLLGATGTGKSATTAWLIERMQRPTLVLA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK L AQL  EF    P NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SS+NE+++R+RH
Sbjct: 72  PNKTLCAQLAKEFSELLPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSVNEEVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV++VS IYG+G+ E Y    V++ +G  +++ +LL  LV  QY R 
Sbjct: 132 SATMSLLTRRDVVVVATVSAIYGLGTPEEYLDRAVRVAVGQELDRDQLLRRLVDIQYTRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P++ E++A R+ +FG+++E++    PLTG  +R V+ + I+
Sbjct: 192 DMAFQRGTFRVRGDTLEIIPAY-EELAVRIELFGDEVEKLYYLNPLTGDVVREVDHLLIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY      +  A++ I+ EL  RL ELE++G+LLEAQRL  R TYD+EM+   G C 
Sbjct: 251 PATHYAAGPQRMERAIRDIETELAERLAELERQGKLLEAQRLRMRTTYDIEMMRQVGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR PG PP  L +Y P+D L  +DESHVTIPQI GMY GD  RK  L ++
Sbjct: 311 GIENYSMHIDGRLPGSPPHCLLDYFPDDFLTVIDESHVTIPQIGGMYEGDASRKRMLIDH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRF+E+       + +SATPG WELE  QG  VEQ+IRPTGLVDP V 
Sbjct: 371 GFRLPSAADNRPLRFDEFLERVGQMVFLSATPGPWELEHAQGEFVEQVIRPTGLVDPEVV 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+  + Q++D+  EI L  ++  R+L+T LTK+MAEDL++YL E  IRVRY+HSEV TL 
Sbjct: 431 IKPTKGQIDDLMHEIKLRTERDERVLVTTLTKKMAEDLSDYLLENGIRVRYLHSEVDTLR 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 491 RVELLRELRRGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGRSLIQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+  AIDET RRR KQ+ HN+ H I+P+ +++KI +++D I  E 
Sbjct: 551 NVSGQVHMYADKITPSMADAIDETNRRRAKQIAHNEAHGISPEPLRKKIHDILDDIYREA 610

Query: 741 AATTNI--------------------------SIDAQQLSLSKKKGKAHLKSLRKQMHLA 774
                                           +    +  +++ +    ++ L  QM  A
Sbjct: 611 EDIEATRAGGAVRQLSRGKAPVKETRSRARAGAATPAREGMARAELAQLIQDLSDQMLAA 670

Query: 775 ADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           A  L FE AARIRDE+  LK     +G+D
Sbjct: 671 ARELQFELAARIRDEVSELKKE--LRGMD 697


>gi|153207959|ref|ZP_01946512.1| excinuclease ABC, B subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|212218858|ref|YP_002305644.1| excinuclease ABC subunit B [Coxiella burnetii CbuK_Q154]
 gi|226698332|sp|B6J8A0|UVRB_COXB1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|120576260|gb|EAX32884.1| excinuclease ABC, B subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|212013120|gb|ACJ20500.1| excinuclease ABC subunit B [Coxiella burnetii CbuK_Q154]
          Length = 672

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/665 (54%), Positives = 488/665 (73%), Gaps = 8/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L+ G+      Q LLGVTGSGKTFT+A  IE +QRP +++ 
Sbjct: 5   FKLTSKFKPSGDQPQAIEKLVAGLEDGLAYQTLLGVTGSGKTFTIANAIEKVQRPTLILE 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ Y+E + FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN+ I++MR 
Sbjct: 65  PNKTLAAQFYAEMREFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++ ER+D I++++VS IYG+G  +SY +M++ L  GD ++Q+++L  L + QY R 
Sbjct: 125 SATKAITERHDTIIIATVSAIYGLGDPDSYLKMLLHLTRGDQIDQRKILQRLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + R T+RV GD I+I+P+  E  A RV +F +++E +S F PLTG+ +R V  I +Y
Sbjct: 185 DLELRRATYRVNGDIIDIYPADSEREAVRVELFDDEVENLSYFDPLTGEMLRRVPRITVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  L + +  IK ELK RL +LEK  +L+E QRLEQR  +D+EM+   G C 
Sbjct: 245 PKTHYVTPREKLLSTLDQIKIELKERLSQLEKANKLVERQRLEQRTKFDMEMILELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTL +Y+P+D+LL +DESHVTIPQ+ GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRNEGEPPPTLIDYLPKDALLIIDESHVTIPQLGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+  L P TI +SATPG +E +Q    +VE ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFDEFEKLAPQTIFISATPGPYEEKQSDQ-VVELLVRPTGLIDPEIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A Q  R+L+T LTKRMAEDLTEY  E N+RVRY+HS++ T+E
Sbjct: 424 VRPVATQVDDLLSEIKKRAAQNERVLVTTLTKRMAEDLTEYFTEHNVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FD+LVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RVEIIRDLRLGVFDMLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           NV+ K ILYAD IT S++ A++E  RRR  Q  +N+KH+I P+S+++ + E+I+      
Sbjct: 544 NVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTYT 603

Query: 739 -----EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                 + A      +A+ ++++ K+    L+ L +QM+  A NL FEEAA +RD+I+ +
Sbjct: 604 ERGRFVNQAQLIAEEEAKYIAMTPKQLAKELRKLEEQMYHHARNLEFEEAAAVRDKIQHI 663

Query: 794 KSSPY 798
           +    
Sbjct: 664 RKGLL 668


>gi|124026822|ref|YP_001015937.1| excinuclease ABC subunit B [Prochlorococcus marinus str. NATL1A]
 gi|189037986|sp|A2C5B3|UVRB_PROM1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|123961890|gb|ABM76673.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str.
           NATL1A]
          Length = 678

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/679 (52%), Positives = 465/679 (68%), Gaps = 17/679 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  +++Q  Y P GDQPAAI  L+ G++  EK Q LLG TG+GKTFT+A +I    RPA+
Sbjct: 1   MPEYKLQAPYTPKGDQPAAIKGLVGGVNDGEKFQTLLGATGTGKTFTIANLIAQTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K SSINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPDNAVEYFISYYDYYQPEAYVPVSDTYIAKTSSINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER+D IVV+S+SCIYG+G    Y +  V+ ++G S++ +  L SLV  QY
Sbjct: 121 LRHSATRSLFERDDVIVVASISCIYGLGIPSEYLKASVKFQVGQSIDLRSCLRSLVSNQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI I RG FRV GD +EI P++ +D   R+ +FG+++E IS   P TG+ +  +++I
Sbjct: 181 TRNDIEISRGRFRVRGDVLEIGPAY-DDRLVRLELFGDEVESISYVDPTTGEILNKLDSI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP+  L++A+K IK+ELK RL  L +EG+LLEAQRLEQR  YDLEML+  G
Sbjct: 240 NIYPAKHFVTPKDRLDSAIKAIKKELKDRLEFLNQEGKLLEAQRLEQRTIYDLEMLKEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L+GR PG  P  L +Y P+D LL +DESHVT PQ+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLSGREPGSAPECLIDYFPKDWLLLIDESHVTCPQLRAMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+  E+      T+ +SATPG WEL Q    IVEQ+IRPTG++DP
Sbjct: 360 IDHGFRLPSAADNRPLKDIEFWNKAKQTVFISATPGDWELSQSTKNIVEQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    QV+D+  EI   A +  RIL+T LTKRMAEDLT+YL E  IRVRY+HSE+ 
Sbjct: 420 LVEVRPTHGQVDDLLFEIRKRASKNQRILVTTLTKRMAEDLTDYLSENKIRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LV ILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAQRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V    +LYAD +T S+  AI ET RRRE Q  +N +H I P+   +K    I   L
Sbjct: 540 AARHVEGLALLYADKMTDSMAKAISETERRREIQNIYNIEHGITPKPAGKKASNSILSFL 599

Query: 738 L------EDAATTNI----------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
                  +D +T +           S       +S +     ++ L  +M + A +L+FE
Sbjct: 600 EISRRLNQDGSTDDFVDIADKLIEHSAKDSDSGVSLESLPELIEKLESKMKIKAKDLDFE 659

Query: 782 EAARIRDEIKRLKSSPYFQ 800
           +AA +RD IK+L+     +
Sbjct: 660 KAAILRDRIKKLRHRLVGR 678


>gi|302206072|gb|ADL10414.1| Excinuclease ABC subunit B [Corynebacterium pseudotuberculosis
           C231]
 gi|308276310|gb|ADO26209.1| excinuclease ABC subunit B [Corynebacterium pseudotuberculosis I19]
          Length = 699

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/690 (52%), Positives = 472/690 (68%), Gaps = 9/690 (1%)

Query: 116 LLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
                   +      +    +    F + ++Y P+GDQPAAI +L   +   E+  +LLG
Sbjct: 3   FAAEHPELSVSDFRPVGEIERTSGTFHVVSEYKPAGDQPAAIEELDARLDRGERDVVLLG 62

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GK+ T A +IE  QRP +VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPE
Sbjct: 63  ATGTGKSATAAWLIEQQQRPTLVMAPNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPE 122

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AY+ +TDTYIEK+SSIN+ ++R+RH AT SLL R D +VVSSVSCIYG+G+ +SY    V
Sbjct: 123 AYIAQTDTYIEKDSSINDDVERLRHRATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSV 182

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            LK+G+ VE+   L  LV  QY R DIG  RGTFRV GD+++I P++ E+VA RV  FG+
Sbjct: 183 MLKVGEEVERDRFLRLLVDIQYDRNDIGFTRGTFRVKGDTVDIIPAY-EEVAVRVEFFGD 241

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ +   +PLTG  IR VE ++I+  +HYV     +  A++ IKEEL  RL +LE  G+
Sbjct: 242 EIDALYYIHPLTGDVIRRVEEVRIFPATHYVAGLERMAKAIEGIKEELADRLTDLENRGK 301

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRL  R  YDLEM+E  G C  IENYSR+L GR  G  P TL +Y P D L  +DE
Sbjct: 302 LLEAQRLRMRTEYDLEMIEQVGFCSGIENYSRHLDGREAGSAPATLLDYFPADFLTIIDE 361

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVT+PQI GM+ GD  RK  L E+GFRLPS +DNRPLR+EE+      T+ +SATPG +
Sbjct: 362 SHVTVPQIGGMFEGDMSRKRNLVEFGFRLPSALDNRPLRWEEFEQRVGQTVYMSATPGDY 421

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           EL    G  VEQ+IRPTGL+DP +++R  + Q++D+  EI    Q+  R+L+T LTK+MA
Sbjct: 422 ELAAAGGEYVEQVIRPTGLLDPKIDVRPTKGQIDDLIHEIRQRTQKQERVLVTTLTKKMA 481

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL E N+RVRY+HS++ TL+R+E++R LRLG++DVLVGINLLREGLD+PE  LVA
Sbjct: 482 EDLTDYLLENNVRVRYLHSDIDTLQRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVA 541

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS  SLIQTIGRAARNV+ +VI+YAD +T S+Q AIDET RRREKQ+ +N
Sbjct: 542 ILDADKEGFLRSTKSLIQTIGRAARNVSGEVIMYADRVTDSMQYAIDETERRREKQIAYN 601

Query: 716 KKHNINPQSVKEKIMEVIDPILL--------EDAATTNISIDAQQLSLSKKKGKAHLKSL 767
            +H I+PQ +++KI +++D +          E +A   I+      ++   K +  +  L
Sbjct: 602 TEHGIDPQPLRKKIADILDQVQEARGETASQEASADAAIAEKRDLSAMPADKLEVLISEL 661

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             QM  AA  L FE A R+RDEI  LK   
Sbjct: 662 TAQMGEAARELKFELAGRLRDEIVDLKKEL 691


>gi|229829634|ref|ZP_04455703.1| hypothetical protein GCWU000342_01731 [Shuttleworthia satelles DSM
           14600]
 gi|229791623|gb|EEP27737.1| hypothetical protein GCWU000342_01731 [Shuttleworthia satelles DSM
           14600]
          Length = 664

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/657 (51%), Positives = 464/657 (70%), Gaps = 3/657 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + + Y P+GDQP AI  L+KG    ++   L GVTGSGKTFTMA VI+ + +P +
Sbjct: 1   MDHFVLHSKYKPTGDQPQAIDALVKGFREGDQFATLKGVTGSGKTFTMANVIQKLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP++DTYI K+S+IN++ID+
Sbjct: 61  IISHNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQSDTYIAKDSAINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT +L ER D ++V+SVSCIYGIGS E Y  M+V  + G  +++ + + SL+  QY
Sbjct: 121 LRLSATAALAERRDVVIVASVSCIYGIGSPEDYENMMVSFRPGMEIDRDDAIKSLIDMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD ++IFP+   D A+R+  FG++I+ I E   LT +    +E +
Sbjct: 181 TRSDLDFSRGTFRVRGDVLDIFPAVASDYAYRLEFFGDEIDRILEIDVLTQEARHEMEHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV P+  ++ A K I+EEL  R+   ++  +LLEAQR+ +R  +D+EML  TG
Sbjct: 241 AIFPASHYVVPQEKIDAACKTIQEELDSRIRYFKQNDKLLEAQRIAERTNFDIEMLRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR++TG+ PG+ P  L +Y  +D L+ +DESH+T+PQI GMY GD  RK +L
Sbjct: 301 FCSGIENYSRHMTGQKPGQAPYCLIDYFGDDFLMIIDESHITLPQIRGMYNGDQARKRSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL F E+       + VSATPG +E E  + +  EQ+IRPTGL+DP
Sbjct: 361 VDYGFRLPSALDNRPLNFAEFENKIDQMLFVSATPGDYEAEH-ELMRTEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    Q++D+  EI    ++G ++L+T LTKRMAEDLT+Y+ E  IRV+Y+HS++ 
Sbjct: 420 EIFVRPVEGQIDDLIGEIRGETKKGHKVLITTLTKRMAEDLTDYMLELGIRVKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER +IIRDLRL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERAQIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YADTIT S++LAI+ET RRR  Q  +N++H I PQ++++KI EVI   +
Sbjct: 540 AARNSEGHVIMYADTITDSMRLAIEETNRRRAMQQAYNEEHKITPQTIRKKIQEVI--AI 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             + A  + +   +   +S ++ +  +  +RK+M  AA +LNFE AA +RD++  L+
Sbjct: 598 SRELAKEDAAFCKEPEDMSAEELEERILDIRKKMESAAADLNFERAADLRDQLIDLR 654


>gi|318056345|ref|ZP_07975068.1| excinuclease ABC subunit B [Streptomyces sp. SA3_actG]
 gi|318075155|ref|ZP_07982487.1| excinuclease ABC subunit B [Streptomyces sp. SA3_actF]
          Length = 717

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/709 (49%), Positives = 478/709 (67%), Gaps = 42/709 (5%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             +    + +  F++ + Y PSGDQP AIA+L K +   EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVTQIERTVAPFEVVSPYSPSGDQPTAIAELEKRVKGGEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IERLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V LK+GD +++ EL
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGDELDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG
Sbjct: 182 LRRFVDIQYTRNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSLLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I + + + ++  SHY+     +  A+  I++EL++RL ELEK+G+LLEAQRL  R TY
Sbjct: 241 EVISDDQQVYVFPASHYIAGPERMERAINGIEKELEVRLAELEKQGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EML   G+C  +ENYS +   R PG PP TL +Y PED LL +DESHVT+PQI  MY 
Sbjct: 301 DIEMLRQIGTCSGVENYSMHFDDREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL++EE+       + +SATPG++EL +  G  VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLKWEEFQKRIGQAVYLSATPGNYELSRSDG-FVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I 
Sbjct: 420 IRPTGLVDPEIVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMAEDLTDYFLELGIN 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD IT +++ AIDET RRR KQ+ +N +  I+PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADKITPAMERAIDETNRRRAKQIAYNTERGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKK------------------------------ 758
           I +++  I  E+  T ++     + +   K                              
Sbjct: 600 INDIVASIAREEVDTDSLLGTGYRQAKEGKGAKTPVPALGGKATAESGKAAKGKAKKGKA 659

Query: 759 ----------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                          ++ +  +M  AA +L FE AAR+RDE+  +K   
Sbjct: 660 ATAPTDQPGAALAQQIEEMTDRMRAAAADLQFEVAARLRDEVSEMKKEL 708


>gi|317055166|ref|YP_004103633.1| excinuclease ABC subunit B [Ruminococcus albus 7]
 gi|315447435|gb|ADU20999.1| excinuclease ABC, B subunit [Ruminococcus albus 7]
          Length = 656

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/659 (54%), Positives = 467/659 (70%), Gaps = 5/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  FQ+ +DY  SGDQP A+  L+KG+ S  K Q LLGVTGSGKTFTMA VIE + RP +
Sbjct: 1   MDRFQLVSDYKLSGDQPEAVDALVKGVESGMKEQTLLGVTGSGKTFTMANVIERLNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NKILAAQL SEFK FFP+NAVEYFVSYYDYYQPEAYVP TD YIEK+SSIN++ID+
Sbjct: 61  VLAHNKILAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDVYIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT ++ ER D I+V+SVSCIY +G    Y  M+V ++ G    + EL++ LVK QY
Sbjct: 121 LRHSATTAITERRDVIIVASVSCIYSLGDPSEYKSMVVSIRKGAEKSRDELIAELVKIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI  +R  FRV GD +EIFP+   D A RV  FG++I+ I E   LTG+ +  +   
Sbjct: 181 ERNDINFVRNKFRVRGDVVEIFPADSTDKALRVEFFGDEIDRICEVNVLTGEVLSTLNHA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++  SHY+  R  +  A+  IKEEL  R+   E  G L+EAQR++QR  YD+EMLE  G
Sbjct: 241 AVFPASHYIVGREKMLDAIDEIKEELAERVKCFEDRGMLIEAQRIQQRTNYDMEMLEEIG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L  R+ G  P TLF+++P+D LL VDESHV++PQ+ GM+ GD  RK TL
Sbjct: 301 FCSGIENYSRVLARRSKGAVPFTLFDFMPDDFLLMVDESHVSLPQVRGMFAGDRARKQTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL+F+E+       I VSATPG  E E+ Q  IVEQ+IRPTGL+DP
Sbjct: 361 VDYGFRLPSALDNRPLQFDEFYERINQAIFVSATPGPIEKEKSQQ-IVEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    Q+ED+  EIN   ++G R+L+T LTK+MAEDLT YL   +++VRYMH ++ 
Sbjct: 420 LISVRPTDGQIEDLLGEINKRVEKGQRVLVTTLTKKMAEDLTAYLKGFDVKVRYMHHDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS++SLIQTIGR
Sbjct: 480 TIERMEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSESSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD++T+S++ AI ET RRR  Q ++N++H I P+++ + I +VI+   
Sbjct: 540 AARNSEGMVIMYADSVTRSMESAIRETERRRAIQEKYNEEHGIVPKTIVKDIRDVIEIST 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            E+A  +      Q + LSK + +  +  L ++M  AA  L FE AA +RD I  LK  
Sbjct: 600 KEEAEYSAR----QAVKLSKAEQQKLIDKLTREMKEAAKLLEFEHAAFLRDRIAELKGE 654


>gi|300741423|ref|ZP_07071444.1| excinuclease ABC subunit B [Rothia dentocariosa M567]
 gi|300380608|gb|EFJ77170.1| excinuclease ABC subunit B [Rothia dentocariosa M567]
          Length = 722

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/711 (49%), Positives = 480/711 (67%), Gaps = 47/711 (6%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
               + +  F++ + Y P+GDQP AIA+L + + + EK  +L+G TG+GK+ T A ++E+
Sbjct: 5   PEIKRVVAPFEVVSPYQPAGDQPKAIAELTERVENGEKDIVLMGATGTGKSATAAWLVES 64

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +QRP +VM  NK LAAQL +E +   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSI
Sbjct: 65  VQRPTLVMVQNKTLAAQLANELRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSI 124

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           NE+++R+RHSAT SLL R D +VVS+VSCIYG+G+ E Y + +V LK GD +++ +LL  
Sbjct: 125 NEEVERLRHSATNSLLTRRDVVVVSTVSCIYGLGTPEEYVEQMVTLKRGDEIDRDDLLRQ 184

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
            V  QY R D+   RGTFRV GD++EI P + E+ A R+  FG++IE I   +PLTG+ I
Sbjct: 185 FVNMQYARNDMDFHRGTFRVRGDTVEIIPMY-EEHAIRIEFFGDEIEAIYTLHPLTGEVI 243

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
           R  + + ++  SHYV     +  A+  I++EL+ RL  LE +G+LLEAQRL  R TYDLE
Sbjct: 244 REEDEMYVFPASHYVAGPERMARAIASIEDELQERLQTLESQGKLLEAQRLRMRTTYDLE 303

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M+E  G    IENYSR++ GR+ G  P  L +Y P+D LL +DESHVT+PQI  MY GD 
Sbjct: 304 MMEQMGFTSGIENYSRHIDGRSAGSAPHCLLDYFPDDFLLIIDESHVTVPQIGAMYEGDM 363

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK TL E+GFRLPS MDNRPL+++E+      TI +SATPG +EL Q  G  VEQIIRP
Sbjct: 364 SRKRTLVEHGFRLPSAMDNRPLKWDEFLERIGQTIYLSATPGKYELSQADG-YVEQIIRP 422

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGLVDP + ++  + Q++D+ ++I    ++  R+L+T LTKRMAEDLTEYL +  +RV+Y
Sbjct: 423 TGLVDPEIIVKPTKGQIDDLLEQIQERTERDERVLVTTLTKRMAEDLTEYLVQHGVRVQY 482

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS+V TL+R+E++R+LRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSL
Sbjct: 483 LHSDVDTLKRVELLRELRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSL 542

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARNV+ +V +YADT+T S++ AIDET RRRE Q  +N++H I+PQ +++KI +
Sbjct: 543 IQTIGRAARNVSGQVHMYADTVTDSMRTAIDETNRRREIQQAYNREHGIDPQPLRKKIAD 602

Query: 732 VIDPILLEDAATTNI-----------------------------SIDAQQLSL------- 755
           + D +  E+  T  +                             +   +  +L       
Sbjct: 603 ITDVLAREEEDTHELLQLRKSGKKGSRTVEAGAKTGSSTSSKIAASTPESDALLAKAQDR 662

Query: 756 ---------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                      +     ++ L +QM LAA+NL FE AAR+RDE+  LK   
Sbjct: 663 VRADGLAAEPAEDLLELIEQLSEQMRLAAENLQFELAARLRDELTDLKKEF 713


>gi|254391573|ref|ZP_05006773.1| UvrABC system protein B [Streptomyces clavuligerus ATCC 27064]
 gi|197705260|gb|EDY51072.1| UvrABC system protein B [Streptomyces clavuligerus ATCC 27064]
          Length = 709

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/702 (50%), Positives = 478/702 (68%), Gaps = 44/702 (6%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + PSGDQP AIA L + I + EK  +LLG TG+GK+ T A +IE +QRP +
Sbjct: 1   MAPFEVVSPFQPSGDQPTAIADLERRIRAGEKDVVLLGATGTGKSATTAWMIERLQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           VMAPNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAYVP++DTYIEK+SSINE+++R
Sbjct: 61  VMAPNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +V L++G+ +++ ELL   V  QY
Sbjct: 121 LRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVPLRVGEEIDRDELLRRFVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG+ +   +++
Sbjct: 181 TRNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTGEILSEDQSL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++  SHYV     L  A+  I+ EL+ RL EL+K+G+LLE+QRL  R TYD+EM+   G
Sbjct: 240 HVFPASHYVAGPERLEKAVDGIEAELEQRLAELDKQGKLLESQRLRMRTTYDIEMMRQIG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC  IENYS +  GR PG PP TL +Y PED LL +DESHVT+PQI  MY GD  RK TL
Sbjct: 300 SCSGIENYSMHFDGREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRTL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS +DNRPL++EE+      T+ +SATPG++EL +  G  VEQIIRPTGLVDP
Sbjct: 360 VDHGFRLPSALDNRPLKWEEFTERIGQTVYLSATPGAYELSRGDG-FVEQIIRPTGLVDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V ++    Q++D+  EI +  ++  R+L+T LTK+MAEDLT+Y  E  IRVRY+HS+V 
Sbjct: 419 EVVVKPTEGQIDDLVHEIRVRTERDERVLVTTLTKKMAEDLTDYFLELGIRVRYLHSDVD 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGR
Sbjct: 479 TLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ +V +YAD IT +++ AIDET RRREKQ+ +N +  I+PQ +++KI +++  I 
Sbjct: 539 AARNVSGQVHMYADKITPAMEKAIDETNRRREKQIAYNTEKGIDPQPLRKKINDIVATIA 598

Query: 738 LEDAATTNI------------------------------------------SIDAQQLSL 755
            E+  T  +                                             A     
Sbjct: 599 REEVDTEELLGSDYRKPKERSGKAGKAPVPALGGKGAAQGRGRAGGKGERAGTGADTSGR 658

Query: 756 SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
              +    ++ + ++M  AA +L FE AAR+RDE+  LK   
Sbjct: 659 PATELAGIIEEMTERMRAAAADLQFEIAARLRDEVGELKKEL 700


>gi|323340188|ref|ZP_08080452.1| excision endonuclease subunit UvrB [Lactobacillus ruminis ATCC
           25644]
 gi|323092379|gb|EFZ34987.1| excision endonuclease subunit UvrB [Lactobacillus ruminis ATCC
           25644]
          Length = 665

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/657 (53%), Positives = 468/657 (71%), Gaps = 2/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIA+L  GI + E  Q+LLG TG+GKTFT++ VI  + +P +V+A
Sbjct: 10  FELCSSYKPTGDQPEAIAELTAGIKAGEHAQILLGATGTGKTFTISNVIANVNKPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LLERND IVV+SVSCI+G+G    Y Q  + L +     +  LL  LV+ Q++R 
Sbjct: 130 AATSALLERNDVIVVASVSCIFGLGDPSEYQQQALSLHVDQEYGRDRLLRELVEIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD ++IFP+  +  A R+  FG+DI+ I EF PLTG+ + + + + I+
Sbjct: 190 DIDFQRGRFRVRGDVVDIFPASSDSSALRIEFFGDDIDRICEFNPLTGEIVTDTDKVTIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A++ I++ELK RL EL  +G+LLEAQRLEQR TYD+EM+   G C 
Sbjct: 250 PATHFLTNDDRMKQALEGIEKELKERLEELRAQGKLLEAQRLEQRTTYDIEMMREMGYCS 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS+Y+  R     P TL ++ P+D LL VDESHVT+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSKYMDNRQMN-RPFTLLDFFPKDFLLVVDESHVTMPQVRGMYNGDQARKQMLVDY 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRL S +DNRPL+ EE+  L    I +SATPG +E +Q    IV+QIIRPTGL+DP +E
Sbjct: 369 GFRLKSALDNRPLKLEEFEKLTNQIIYMSATPGDYEKKQT-DHIVQQIIRPTGLLDPEIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN   ++  R+ +T LTK+MAEDLT+YL E  I+V+Y+HS++KTLE
Sbjct: 428 VRPIMGQMDDLVGEINKRTEKNERVFVTTLTKKMAEDLTDYLKELGIKVKYLHSDIKTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  I+RDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 488 RTRIVRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIGRAAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+YAD +T+S++ AIDET RRRE Q+++N++  I PQ++K++I   I       
Sbjct: 548 NANGHVIMYADEVTESMKAAIDETKRRREIQMKYNQERGIVPQTIKKEIRAAISYGDKVS 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             +   + D     LS+K  +  +  L +QM  AA  L+FEEAAR+RD +  LK+  
Sbjct: 608 KKSKKKTEDFDFNDLSQKDQQEMISGLEEQMREAAKKLDFEEAARLRDTVLELKAEI 664


>gi|309811766|ref|ZP_07705540.1| excinuclease ABC, B subunit [Dermacoccus sp. Ellin185]
 gi|308434187|gb|EFP58045.1| excinuclease ABC, B subunit [Dermacoccus sp. Ellin185]
          Length = 701

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/694 (49%), Positives = 477/694 (68%), Gaps = 27/694 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + +  + +   ++++++ P+GDQP AIA+L K + + E+  +LLG TG+GK+ T A +
Sbjct: 2   RPVTDLQRSVAPIKVESEFEPAGDQPKAIAELSKRVKAGEQDIVLLGATGTGKSATTAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +V+APNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAYVP+TDTYIEK+
Sbjct: 62  IEQVQRPTLVLAPNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   + +LK+G  + + EL
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMARLKVGQEINRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V+ QY R D+   RGTFRV GD++EI P + E++A R+  FG++I+ +   +PLTG
Sbjct: 182 LRRFVEMQYTRNDLAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRLYTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + +     + ++  +HYV     +  A+  I+ EL  +L   E EG++LEAQRL  R TY
Sbjct: 241 EIVNEESEMYVFPATHYVAGPERMERAIAGIEVELGDQLKRFEAEGKMLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   GSC  IENYSR++ GR PG  P TL +Y PED LL +DESH T+PQI  MY 
Sbjct: 301 DIEMMRQVGSCAGIENYSRHMDGRGPGTAPNTLLDYFPEDFLLVIDESHQTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS MDNRPL++EE+      T+ +SATPG +E+ +  G  VEQ+
Sbjct: 361 GDMSRKRTLVDHGFRLPSAMDNRPLKWEEFLEHIGQTVYLSATPGDYEMSKSDG-YVEQV 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++  + Q++D+  EI     +  R+L+T LTK+MAEDLT+YL ++ +R
Sbjct: 420 IRPTGLVDPEIVLKPTKGQIDDLLGEIRTRTDKNERVLVTTLTKKMAEDLTDYLLDKGVR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSEV TL R+E++R+LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSEVDTLRRVELLRELRMGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSA 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +V +YAD +T S+Q AIDET+RRRE Q+ +N +  I+PQ +++K
Sbjct: 540 RSLIQTIGRAARNVSGQVHMYADKVTPSMQEAIDETSRRRELQIAYNTEKGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI-------------------------SIDAQQLSLSKKKGKAH 763
           I ++ D +  E A T  +                         +  A++ + S       
Sbjct: 600 IADITDMLQRESADTDALLGSGRSMSRGKGRGGSGAASADANVAAGAKREASSAADLAGL 659

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L+ QM  AA  L FE AAR+RDE++ LK   
Sbjct: 660 IQELQAQMSEAASELQFELAARLRDELRDLKKEL 693


>gi|308177709|ref|YP_003917115.1| excinuclease ABC subunit B [Arthrobacter arilaitensis Re117]
 gi|307745172|emb|CBT76144.1| excinuclease ABC subunit B [Arthrobacter arilaitensis Re117]
          Length = 695

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/680 (51%), Positives = 475/680 (69%), Gaps = 20/680 (2%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           + +  F++ ++Y P+GDQP AI  L + I++ EK  +LLG TG+GK+ T A ++E +QRP
Sbjct: 9   RVVAPFEVISEYEPAGDQPQAIKALTERINAGEKDIVLLGATGTGKSATTAWLVEQVQRP 68

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+  NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSINE++
Sbjct: 69  TLVLVQNKTLAAQLANEFRELMPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEV 128

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           +R+RHSAT SLL R D IVV++VSCIYG+G+ E Y   +V ++ G+ + +  +L   V  
Sbjct: 129 ERLRHSATNSLLTRRDTIVVATVSCIYGLGTPEEYVAGMVTVRAGEELNRDAMLRQFVAM 188

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D+   RGTFRV GD++EI P + E+ A R+  FG+++E I   +P+TG+ IR   
Sbjct: 189 QYTRNDMDFHRGTFRVRGDTVEIIPMY-EEQAVRIEFFGDEVEAIHTLHPVTGEVIREET 247

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I+  SHYV     ++ A+K I++EL +RL ELE + +L+EAQRL  R TYDLEM+E 
Sbjct: 248 EMYIFPASHYVAGAERMHKAIKRIEDELAVRLKELESQNKLVEAQRLRMRTTYDLEMMEQ 307

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR++ GR  G  P  L +Y P+D LL +DESHVT+PQI  MY GD  RK 
Sbjct: 308 MGFCNGIENYSRHIDGREAGSAPHCLIDYFPDDFLLVIDESHVTVPQIGAMYEGDMSRKR 367

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL E+GFRLPS MDNRPL+++E+      T+ +SATPG +EL +  G  VEQIIRPTGL+
Sbjct: 368 TLVEHGFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGKYELGKSDG-FVEQIIRPTGLI 426

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP + ++  + Q++D+ DEI     +  R+L+T LTKRMAEDLT+YL E  +RV+Y+HS+
Sbjct: 427 DPEIIVKPTKGQIDDLLDEIRTRVDRDERVLVTTLTKRMAEDLTDYLTEHQVRVQYLHSD 486

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           V T+ R+E++R+LR+G +DVLVGINLLREGLD+PE  LVAILDADK+GFLRS TSLIQTI
Sbjct: 487 VDTIRRVELLRELRMGSYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSATSLIQTI 546

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+ +VI+YAD IT ++  AI+ET RRRE Q  HNK+H I+P  +++KI ++ D 
Sbjct: 547 GRAARNVSGQVIMYADKITDAMGQAIEETNRRREIQEAHNKEHGIDPMPLRKKIADITDQ 606

Query: 736 ILLEDAATTN------ISIDAQQLSLS------------KKKGKAHLKSLRKQMHLAADN 777
           +  EDA T        ++ +A++   S             +     ++ + +QMH AA  
Sbjct: 607 LAREDADTQELLNNNRLAKNAKRTKASSTVRKDGLAAAPAEDLLTQIEEMTEQMHAAAAE 666

Query: 778 LNFEEAARIRDEIKRLKSSP 797
           L FE AARIRDE+  LK   
Sbjct: 667 LQFELAARIRDEVSELKKEL 686


>gi|165919102|ref|ZP_02219188.1| excinuclease ABC, B subunit [Coxiella burnetii RSA 334]
 gi|165917171|gb|EDR35775.1| excinuclease ABC, B subunit [Coxiella burnetii RSA 334]
          Length = 672

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/665 (54%), Positives = 488/665 (73%), Gaps = 8/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L+ G+      Q LLGVTGSGKTFT+A  IE +QRP +++ 
Sbjct: 5   FKLTSKFKPSGDQPQAIEKLVAGLEDGLAYQTLLGVTGSGKTFTIANAIEKVQRPTLILE 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQ Y+E + FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN+ I++MR 
Sbjct: 65  PNKTLAAQFYAEMREFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++ ER+D I++++VS IYG+G  +SY +M++ L  GD ++Q+++L  L + QY R 
Sbjct: 125 SATKAITERHDTIIIATVSAIYGLGDPDSYLKMLLHLTRGDQIDQRKILQRLAELQYNRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + R T+RV GD I+I+P+  E  A RV +F +++E +S F PLTG+ +R V  I +Y
Sbjct: 185 DLELRRATYRVNGDIIDIYPADSEREAVRVELFDDEVENLSYFDPLTGEMLRRVPRITVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  L + +  IK ELK RL +LEK  +L+E QRLEQR  +D+EM+   G C 
Sbjct: 245 PKTHYVTPREKLLSTLDQIKIELKERLSQLEKANKLVERQRLEQRTKFDMEMILELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GRN GEPPPTL +Y+P+D+LL +DESHVTIPQ+ GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRNEGEPPPTLIDYLPKDALLIIDESHVTIPQLGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+  L P TI +SATPG +E +Q    +VE ++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFDEFEKLAPQTIFISATPGPYEEKQSDQ-VVELLVRPTGLIDPEIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI   A Q  R+L+T LTKRMAEDLTEY  E N+RVRY+HS++ T+E
Sbjct: 424 VRPVATQVDDLLSEIKKRAAQNERVLVTTLTKRMAEDLTEYFTEHNVRVRYLHSDIDTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FD+LVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQT+GRAAR
Sbjct: 484 RVEIIRDLRLGVFDMLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           NV+ K ILYAD IT S++ A++E  RRR  Q  +N+KH+I P+S+++ + E+I+      
Sbjct: 544 NVHGKAILYADRITDSMKRAMEEAERRRIAQSAYNEKHHITPKSIQKAVTEIIEGARTYT 603

Query: 739 -----EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                 + A      +A+ ++++ K+    L+ L +QM+  A NL FEEAA +RD+I+ +
Sbjct: 604 ERGRFVNQAQLIAEEEAKYIAMTPKQLAKELRKLEEQMYHHARNLEFEEAAAVRDKIQHI 663

Query: 794 KSSPY 798
           +    
Sbjct: 664 RKGLL 668


>gi|258593070|emb|CBE69381.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
           [NC10 bacterium 'Dutch sediment']
          Length = 674

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/659 (55%), Positives = 489/659 (74%), Gaps = 2/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++  DY P GDQP AI +L++G       Q+LLGVTGSGKTFTMA VI A++RP +
Sbjct: 1   MSNFKLVCDYQPKGDQPQAIRRLVEGCLQGRPHQVLLGVTGSGKTFTMANVIAAIERPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL+ EFK FFPHNAVEYFVSYYDYYQPEAY+P TDT+IEK+S IN+QID+
Sbjct: 61  IIAHNKTLAAQLFEEFKAFFPHNAVEYFVSYYDYYQPEAYLPVTDTFIEKDSMINDQIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSLLER D ++V+SVSCIYG+GS E+Y  M+V L+ G   +++ +L  LV+ QY
Sbjct: 121 LRHSATRSLLERRDVVIVASVSCIYGLGSPEAYYGMMVFLERGGRCDREAMLRKLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R +  + RGTFRV GD +EIFP++  D   RV +FG+++E + E  P+TG++I+ +  +
Sbjct: 181 QRNEYDLHRGTFRVRGDVVEIFPAYA-DTVVRVELFGDEVEGLWEIDPVTGERIQMLYRV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +HYVTP      A   I EEL  ++   EK G+LLE QRL+QR  +DLEM+   G
Sbjct: 240 PIYPATHYVTPHDRREAAFAAILEELNEQVTSFEKAGKLLEVQRLKQRTCFDLEMMREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSR+L+GR  GE PPTL +Y+P D+L+ +DESH TIPQI GMY GD  RK TL
Sbjct: 300 VCKGIENYSRHLSGRATGEAPPTLMDYLPRDALVIIDESHQTIPQIRGMYHGDRSRKETL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS MDNRP  FEE+       I VSATPG +EL + +G IVEQIIRPTGL+DP
Sbjct: 360 VEYGFRLPSAMDNRPFTFEEFERAVGQIIYVSATPGPYELAKVKGEIVEQIIRPTGLIDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R  R Q++D+  E+     +G R+L+T LTKRMAE+LTEYL E  I+VRY+HS++ 
Sbjct: 420 EIQVRPIRGQIDDLIGEVRAITARGHRVLITTLTKRMAENLTEYLAEVGIKVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TL+R EIIR+LRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 480 TLKRNEIIRELRLGRFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSSGSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +V+LYADTIT S++ A++ET RRRE+Q+ +N+++ I P+S+K+ I +V+  + 
Sbjct: 540 AARNVEGRVVLYADTITDSMRRAMEETERRRERQIAYNREYGITPESIKKSISDVLSSVT 599

Query: 738 LEDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +D  T   + D +++  +++++  A+++ L K+M  AA  L FE AA +RD I+ ++ 
Sbjct: 600 EKDYYTVPAAPDVEEVGRVTQEELPAYIEQLEKEMRAAAKRLEFERAAELRDRIREMEK 658


>gi|323144279|ref|ZP_08078901.1| excinuclease ABC, B subunit [Succinatimonas hippei YIT 12066]
 gi|322415949|gb|EFY06661.1| excinuclease ABC, B subunit [Succinatimonas hippei YIT 12066]
          Length = 680

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/670 (52%), Positives = 466/670 (69%), Gaps = 12/670 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + +  +GDQ  AI  L+KGI   +K Q LLGVTGSGKTFTMA VI  + RP ++++
Sbjct: 7   FELVSPFKAAGDQVEAIDALVKGIQKGDKAQTLLGVTGSGKTFTMANVIAKLNRPTMILS 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E + FFP NAVEYFVSYYDYYQPEAY+  TDT+IEK++ +NE ID+MR 
Sbjct: 67  HNKTLAAQLYGEMREFFPKNAVEYFVSYYDYYQPEAYIAATDTFIEKDAKVNEHIDQMRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++L+ER D ++V SVS IYG+G  E+Y +M++ L  G+ + Q+++++ L + QY R 
Sbjct: 127 SATKALMERRDVVIVCSVSAIYGLGEPETYLKMMLHLSRGEFISQRDIVTRLAELQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R TFRV GD I+IFP+  E  A RV +F +++E+I  F PLTG     +    ++
Sbjct: 187 DVAFTRSTFRVRGDVIDIFPAESEGFAIRVELFDDEVEKILRFDPLTGAIEAELPRFTVF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTP+  L  A++ IK +LK R        +LLE QRL +R  YD+EM+   G C 
Sbjct: 247 PKTHYVTPKEILQRAVEEIKVDLKERCDYFLSNNKLLEEQRLRERTAYDIEMINEIGYCS 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTGR  GEPPP LF+Y+P+D LL +DESHVT+PQI  MYRGD  RK  L  +
Sbjct: 307 GIENYSRYLTGRKEGEPPPCLFDYLPKDGLLIIDESHVTVPQIGAMYRGDRSRKENLVNF 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+  L+P TI VSATP  +ELE     +VEQ+IRPTGL+DP +E
Sbjct: 367 GFRLPSAFDNRPLKFEEFKKLQPQTIYVSATPADYELEAS-SQVVEQLIRPTGLLDPEIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EI + A +  R+L+T LTK+MAE+LT YL E  IRVRY+HS++ T+E
Sbjct: 426 VRPVATQVDDLMSEIRIRAAKNERVLVTTLTKKMAEELTSYLEEHGIRVRYLHSDIDTVE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FD LVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQT+GRAAR
Sbjct: 486 RMEIIRDLRLGEFDALVGINLLREGLDMPEVSLVAILDADKEGFLRSSRSLIQTVGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------ 734
           NV  K I YAD IT S+++ IDET RRR+ Q + N++HNI P+ +++KI++V++      
Sbjct: 546 NVKGKAIFYADKITDSMRVTIDETKRRRDIQQKFNEEHNITPKQIEKKIVDVMEVALTQT 605

Query: 735 -----PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                P    +   +    D ++  LS K+  A +  L +QM   A  L FEEAA +RDE
Sbjct: 606 SVFKAPEEKRERPISFKEWDKRRHKLSAKELSAKIDKLEEQMLKLASELKFEEAASVRDE 665

Query: 790 IKRLKSSPYF 799
           ++ L+     
Sbjct: 666 MQALQQELLL 675


>gi|326693263|ref|ZP_08230268.1| excinuclease ABC subunit B [Leuconostoc argentinum KCTC 3773]
          Length = 667

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/656 (51%), Positives = 463/656 (70%), Gaps = 1/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL++GI++  K Q+LLG TG+GKTFT++ VI+ +++P +V++
Sbjct: 10  FEVVSKYEPTGDQPKAIDQLVRGINAGVKEQILLGATGTGKTFTISNVIQRVKKPTLVLS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA Q+Y E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S++N++ID++R+
Sbjct: 70  HNKTLAGQIYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNDEIDQLRN 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL RND IVV+SVS I+G+G    Y + ++ L++G+   +++L+  L+  Q+ R 
Sbjct: 130 SATSSLLSRNDVIVVASVSSIFGLGDPHQYQEHVINLRVGNEYGREQLMRDLIDVQFTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EIFP+  +++A RV  FG++I+ I E   LTG+ +   + + IY
Sbjct: 190 DIDFHRGTFRVRGDIMEIFPASEDEMALRVEFFGDEIDRIREINSLTGETVAERDFVAIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T    +  A+  I +E+  ++ + E EG+L+EAQR++QR  YDL MLE  G   
Sbjct: 250 PAKHFMTNDDQMRYALAGINDEMTAQVAKFEAEGKLIEAQRIKQRTEYDLAMLEEMGFVG 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGEPP TL ++ P+D L+  DESHVT+PQI GM+ GD  RK TL  Y
Sbjct: 310 GIENYSRWMDGRQPGEPPFTLLDFFPDDFLIVADESHVTMPQIRGMFNGDKARKETLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ-CQGIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+  E+       I +SATPG +ELE+     + EQIIRPTGL+DP V
Sbjct: 370 GFRLPSALDNRPLKLPEFEQRVNQIIYMSATPGDYELERVTPDHVAEQIIRPTGLLDPEV 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EIN   ++  R+ +T LTKRMAEDLT+YL    ++V Y+H+++KTL
Sbjct: 430 EVRPVMGQIDDLVGEINQRVEKNERVFITTLTKRMAEDLTDYLKNVGLKVAYLHADIKTL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIRDLRLGK+DVL+GINLLREG+D+PE  LVAILDADKEGFLR+  SLIQTIGRAA
Sbjct: 490 ERTEIIRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNPRSLIQTIGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VI+YAD +T+S+Q AIDET RRRE QL++N  H I P ++K+ I ++I      
Sbjct: 550 RNANGHVIMYADKMTRSMQEAIDETARRREIQLQYNATHGITPMTIKKPIRDLISVRTET 609

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                          L K + K  + +L  QM  AA  L+FEEAA++RD +  LK+
Sbjct: 610 TTGEKIDLTQVAFKDLPKDEQKNIIANLENQMKAAAKALDFEEAAQLRDSVMSLKA 665


>gi|302671953|ref|YP_003831913.1| excinuclease ABC B subunit UvrB [Butyrivibrio proteoclasticus B316]
 gi|302396426|gb|ADL35331.1| excinuclease ABC B subunit UvrB [Butyrivibrio proteoclasticus B316]
          Length = 663

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/655 (52%), Positives = 457/655 (69%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI  L++G  +  + + LLGVTGSGKTFTMA VI+A+Q+P ++++
Sbjct: 3   FKIHSEYKPTGDQPKAIKDLVEGFKAGNQFETLLGVTGSGKTFTMANVIQALQKPTLIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP NAVEYFVSYYDYYQPEAYVP+TDTYI K+S+IN++ID++R 
Sbjct: 63  HNKTLAGQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIAKDSAINDEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D IVV+SVSCIYG+GS E +  M + L+ G + ++ E +  LV  QY R 
Sbjct: 123 SATASLAERKDVIVVASVSCIYGLGSPEEFKGMSISLRPGMNKDRDETIKELVAIQYNRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + R  FRV GD+IEIFP++ +D   RV  FG++I+ I E  P+T +    +  + IY
Sbjct: 183 DLELSRCNFRVRGDTIEIFPANADDYLIRVEFFGDEIDRICEIEPVTAKVRSELSHVMIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +N A   I++EL+ ++   + E RL+EAQR+ +R  +D+EM+  TG C 
Sbjct: 243 PASHYVVPQEKINMACDNIEKELEEQIRFFKGEDRLIEAQRISERTNFDVEMMRETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L    PGEPP TL ++   D L+ VDESH+TIPQI  MY GD  RK TL +Y
Sbjct: 303 GIENYSRHLNFMKPGEPPLTLLDFFDRDFLIIVDESHMTIPQIGAMYHGDRSRKLTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       +  SATPG +E E  + +  EQ+IRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLNFEEFEEHIDQMLFCSATPGKYEEEH-ELLRTEQVIRPTGLLDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI     +  ++L+T LTKRMAEDLTEYL E  IRV+Y+HS++ TLE
Sbjct: 422 VRPVEGQIDDLIGEIRTEVDKKNKVLVTTLTKRMAEDLTEYLAESGIRVKYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+RL  FDVLVGINLLREGLDIPE  LVAI+DADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RSEIIRDMRLDVFDVLVGINLLREGLDIPEISLVAIIDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S+Q AIDET RRR  Q E+NK+H I PQ++K+ + ++I       
Sbjct: 542 NAEGRVIMYADNMTDSMQKAIDETKRRRAIQEEYNKEHGITPQTIKKAVRDLIAVTKAVT 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                   D +  S+ + + +  +  ++K+M  AA  L+FE AA +RD++  LK 
Sbjct: 602 KEEFKFEKDPE--SMDQAELEKLIGDVQKKMKRAATELDFETAATLRDQMIELKK 654


>gi|297161422|gb|ADI11134.1| excinuclease ABC subunit B [Streptomyces bingchenggensis BCW-1]
          Length = 718

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/710 (49%), Positives = 477/710 (67%), Gaps = 43/710 (6%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++   + +  F++ + Y PSGDQP AIA L + I + E   +LLG TG+GK+ T A +
Sbjct: 2   RPVSQIERKVAPFEVVSPYQPSGDQPTAIADLGRRIRAGESDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V LK+G  +++ +L
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGQEIDRDQL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG
Sbjct: 182 LRRFVDIQYARNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I + E + ++  +HYV     +  A+  I+ EL+  L  LEK+G+LLEAQRL  R TY
Sbjct: 241 EVITDDEELYVFPATHYVAGPERMERAIAGIESELEQTLARLEKQGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G+C  IENYS ++ GR PG PP TL +Y P+D LL +DESHVT+PQI  MY 
Sbjct: 301 DIEMMRQIGTCSGIENYSLHIDGREPGSPPHTLLDYFPDDFLLVIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G  VEQI
Sbjct: 361 GDASRKRTLIEHGFRLPSALDNRPLKWEEFLERTGQTVYLSATPGPYELSRGDG-FVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y+ E  I+
Sbjct: 420 IRPTGLVDPEVVVKPTEGQIDDLIHEIRTRTEKDERVLVTTLTKKMAEDLTDYMLELGIQ 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+  NK + I+PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQVAFNKANGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI-----------------------------------------S 747
           I +++  I  E+  T  +                                         +
Sbjct: 600 IGDIVATIAREEIDTKELLGTGYRKTDGKGAKGQAKAPVPALAGQRAGSAGKGAKGAKGA 659

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            D Q       +    ++ +  +M  AA  L FE AAR+RDE+  LK   
Sbjct: 660 KDGQLTDRPAAELAELIEEMTDRMRAAAAELQFEIAARLRDEVGELKKEL 709


>gi|86740331|ref|YP_480731.1| excinuclease ABC subunit B [Frankia sp. CcI3]
 gi|86567193|gb|ABD11002.1| Excinuclease ABC subunit B [Frankia sp. CcI3]
          Length = 714

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/697 (51%), Positives = 480/697 (68%), Gaps = 30/697 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           +  +    FQ+ +D+ PSGDQPAAI +L + + + E   +LLG TG+GK+ T A ++E +
Sbjct: 15  DIERTRAPFQVVSDFSPSGDQPAAIDELARRVGAGESDVVLLGATGTGKSATTAWLVERL 74

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +VMAPNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN
Sbjct: 75  QRPTLVMAPNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSIN 134

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           E+++R+RHSAT +LL R D +VV+SVSCIYG+G+ + Y   +V+L++GD +E+  LL   
Sbjct: 135 EEVERLRHSATMNLLTRRDVVVVASVSCIYGLGTPQEYIDRMVRLRVGDEIERDLLLRRF 194

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QY R D+   RGTFRV GD++EIFP + E++A RV MFG++IE ++  +PLTG+ + 
Sbjct: 195 VDVQYTRNDLAFTRGTFRVRGDTVEIFPVY-EELAVRVEMFGDEIERLTYLHPLTGEVVS 253

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
             E I ++  +HYV     +  A+  I+ EL  RL  +E++GRLLEAQRL  R TYD+EM
Sbjct: 254 EAEEIYVFPATHYVAGPERMERAIAGIEAELAERLATMERQGRLLEAQRLRMRTTYDIEM 313

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           +   G C  IENYSR++ GR  G PP TL +Y P+D LL +DESH T+PQI GMY GD  
Sbjct: 314 MRQVGFCSGIENYSRHIDGREAGSPPHTLLDYFPDDFLLVIDESHNTVPQIGGMYEGDMS 373

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L E+GFRLPS MDNRPLR+EE+      T+ +SATPG +EL +  G +VEQIIRPT
Sbjct: 374 RKRNLVEHGFRLPSAMDNRPLRWEEFLERIGQTVYLSATPGPYELGRSVG-VVEQIIRPT 432

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP V ++  + Q++D+  EI L A++  R+L+T LTK+MAEDLT+YL E  IRVRY+
Sbjct: 433 GLLDPEVVLKPTKGQIDDLVHEIRLRAERDERVLVTTLTKKMAEDLTDYLLELGIRVRYL 492

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HSEV TL R+E++ +LR G+FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLI
Sbjct: 493 HSEVDTLRRVELLTELRRGEFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSDKSLI 552

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+ +V +YAD IT S++ AIDET RRREKQ+ +N +  ++PQ +++K++++
Sbjct: 553 QTIGRAARNVSGQVHMYADAITPSMRRAIDETNRRREKQIAYNTERGLDPQPLRKKVVDI 612

Query: 733 IDPILLEDAATTNISID----------------------------AQQLSLSKKKGKAHL 764
           +D ++ + A    I                               A+   L   +    +
Sbjct: 613 LDDMVRQSADGELIGGGGRSQSRGKAPVPGMKSRAGREGAVGRYAAELAGLPSHELAQLI 672

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQG 801
           + L  QMH AA  L FE AAR+RDEI  LK      G
Sbjct: 673 RQLDDQMHEAAKELQFELAARLRDEIAELKKELRGMG 709


>gi|159038906|ref|YP_001538159.1| excinuclease ABC subunit B [Salinispora arenicola CNS-205]
 gi|157917741|gb|ABV99168.1| excinuclease ABC, B subunit [Salinispora arenicola CNS-205]
          Length = 700

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/689 (50%), Positives = 466/689 (67%), Gaps = 27/689 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +D+ P+GDQPAAI  L + +   ++  +LLG TG+GK+ T A +IE +QRP +V+A
Sbjct: 12  FQVVSDFQPAGDQPAAIDDLERRVRRGDRHTVLLGATGTGKSATTAWLIERLQRPTLVLA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK L AQL  EF    P+NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SSINE+++R+RH
Sbjct: 72  PNKTLCAQLAKEFSELLPNNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSINEEVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV++VS IYG+G+ E Y    V++  G  +++ +LL  LV  QY R 
Sbjct: 132 SATMSLLTRRDVVVVATVSAIYGLGTPEEYLDRAVRVATGQELDRDQLLRRLVDIQYTRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P++ E++A R+ +FG+++E +    PLTG  +R V+ + I+
Sbjct: 192 DMAFQRGTFRVRGDTLEIIPAY-EELAVRIELFGDEVERLYYLNPLTGDVVREVDHLLIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY      +  A++ I+ EL  RL ELE+   LLEAQRL  R TYD+EM+   G C 
Sbjct: 251 PATHYAAGPARMERAIRDIETELGERLAELERRSSLLEAQRLRMRTTYDIEMMRQVGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR PG PP  L +Y P+D L  VDESHVTIPQ+ GMY GD  RK  L ++
Sbjct: 311 GIENYSMHIDGRLPGSPPHCLLDYFPDDFLTVVDESHVTIPQVGGMYEGDASRKRMLIDH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRF+E+       + +SATPGSWELE  QG  VEQ+IRPTGLVDP V 
Sbjct: 371 GFRLPSAADNRPLRFDEFLERVGQMVFLSATPGSWELEHAQGEYVEQVIRPTGLVDPEVV 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI L  ++  R+L+T LTK+MAEDL++YL E  IRVRY+HSEV TL 
Sbjct: 431 VKPTKGQIDDLMHEIKLRTERDERVLVTTLTKKMAEDLSDYLLENGIRVRYLHSEVDTLR 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 491 RVELLRELRKGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGRSLIQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+  A+ ET RRR KQ+ HN+ H I+P+ +++KI +++D I  E 
Sbjct: 551 NVSGEVHMYADKITPSMAEAVGETNRRRAKQIAHNEAHGISPEPLRKKIHDILDDIYREA 610

Query: 741 AAT------------------------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
             T                        +       +  +++ +    ++ L  QM  AA 
Sbjct: 611 EETETRVGGAVRQLSRGKAPVKETRSRSRAGAGPAREGMARAELAELIQELNGQMLAAAR 670

Query: 777 NLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
            L FE AARIRDEI  LK     +G+D +
Sbjct: 671 ELQFELAARIRDEISELKKE--LRGMDAA 697


>gi|238060167|ref|ZP_04604876.1| excinuclease ABC, B subunit [Micromonospora sp. ATCC 39149]
 gi|237881978|gb|EEP70806.1| excinuclease ABC, B subunit [Micromonospora sp. ATCC 39149]
          Length = 702

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/689 (50%), Positives = 472/689 (68%), Gaps = 29/689 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +++ P+GDQPAAI  L + +   ++  +LLG TG+GK+ T A ++E +QRP +V+A
Sbjct: 12  FQVVSEFQPAGDQPAAIDDLERRVRRGDRNTVLLGATGTGKSATTAWLVERLQRPTLVLA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK L AQL  EF    PHNAVEYFVSYYDYYQPEAY+P+TDTYIEK+SSINE+++R+RH
Sbjct: 72  PNKTLCAQLAKEFSELLPHNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSINEEVERLRH 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D +VV++VS IYG+G+ E Y    V++ IG  +++ +LL  LV  QY R 
Sbjct: 132 SATMSLLTRRDVVVVATVSAIYGLGTPEEYLDRAVRVAIGQELDRDQLLRRLVDIQYTRN 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD++EI P++ E++A R+ +FG+++E++    PLTG  +R V+++ I+
Sbjct: 192 DMAFQRGTFRVRGDTLEIIPAY-EELAVRIELFGDEVEKLYYLNPLTGDVVREVDSLMIF 250

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY      +  A + I+ EL  RL ELE++G+LLEAQRL  R TYDLEM+   G C 
Sbjct: 251 PATHYAAGPERMERATRDIEAELAERLAELERQGKLLEAQRLRMRTTYDLEMMRQVGFCS 310

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR PG PP  L +Y P+D L  +DESHVTIPQI GMY GD  RK  L ++
Sbjct: 311 GIENYSMHIDGRQPGSPPHCLLDYFPDDFLTVIDESHVTIPQIGGMYEGDASRKRMLIDH 370

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRF+E+       + +SATPG WE+EQ QG  VEQ+IRPTGL+DP V 
Sbjct: 371 GFRLPSAADNRPLRFDEFLERVGQMVFLSATPGGWEMEQAQGEFVEQVIRPTGLIDPEVV 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI L  ++  R+L+T LTK+MAEDL++YL E  IRVRY+HSEV TL 
Sbjct: 431 VKPTKGQIDDLMHEIKLRTERDERVLVTTLTKKMAEDLSDYLLENGIRVRYLHSEVDTLR 490

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 491 RVELLRELRKGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 550

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +V +YAD IT S+  AI+ET RRR KQ+ HN+ H I+P+ +++KI +++D I  E 
Sbjct: 551 NVSGQVHMYADKITPSMAEAIEETNRRRAKQVAHNEAHGISPEPLRKKIHDILDDIYREA 610

Query: 741 AATTNI--------------------------SIDAQQLSLSKKKGKAHLKSLRKQMHLA 774
             T N                           +    +  +++      ++ L  QM  A
Sbjct: 611 EDTENTRVGGAARQLSRGKAPVKETRSRSRAGATGPSREGMARADLAQLIQELSDQMLAA 670

Query: 775 ADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           A  L FE AARIRDE+  LK     +G+D
Sbjct: 671 ARELQFELAARIRDEVADLKKE--LRGMD 697


>gi|257066895|ref|YP_003153151.1| excinuclease ABC, B subunit [Anaerococcus prevotii DSM 20548]
 gi|256798775|gb|ACV29430.1| excinuclease ABC, B subunit [Anaerococcus prevotii DSM 20548]
          Length = 656

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/659 (54%), Positives = 465/659 (70%), Gaps = 8/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P GDQP AI +L KGI + +  Q+L GVTGSGKTFTMA +I+ +QRP +V+A
Sbjct: 3   FNLKSDYKPRGDQPYAIDKLSKGIEAGDHHQILRGVTGSGKTFTMANIIQNVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL++EFK FFP NAVEYFVSYYDYYQPEAYV  TDTYI K+SSIN++ID+MRH
Sbjct: 63  HNKTLAYQLFTEFKEFFPDNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G    Y +++V L+ G  +  ++++  L+  QY R 
Sbjct: 123 SATMALFERRDVIIVASVSCIYGLGDPIEYQKLVVSLRPGQEISPEDVMRKLIDVQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFR  GD +++FP+  +  A R   FG++I+EISEF  LTG+    +    IY
Sbjct: 183 DVEFSRGTFRRRGDILDVFPAGFDQKAIRFEFFGDEIDEISEFDSLTGKVTARISHAYIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T       A+  I+EEL+ RL EL  E +LLEAQRLEQR  YD+EML   G C 
Sbjct: 243 PASHYATSSEKTEKAIITIEEELEERLAELNSENKLLEAQRLEQRTKYDIEMLREIGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y PED +L VDESHV+IPQ+ GMY GD  RK  L +Y
Sbjct: 303 GIENYSRHLSQRPAGSRPYTLIDYFPEDFVLMVDESHVSIPQVGGMYEGDRSRKQNLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+  L    + VSATPG +E E+  G +V+QIIRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLKFDEFEKLINQAVYVSATPGPYEKEKTHGKMVDQIIRPTGLLDPLIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ +E++    +  R+L+T LTK+MAEDLT +L E  I+VRY+HS++KT+E
Sbjct: 423 VRPTANQIDDLIEEVHATIAKKERVLVTTLTKKMAEDLTTFLTENGIKVRYLHSDIKTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLG+FDVLVGINLLREGLDIPE  L+ ILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RSEIIRELRLGEFDVLVGINLLREGLDIPEVSLITILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YADTIT S++ AIDET RRR  Q E N+KH I P ++K+ I E+I       
Sbjct: 543 NSEGRVIMYADTITGSMRRAIDETERRRTIQEEFNEKHGIVPTTIKKNIAEIIQI----- 597

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
              T    + +    SK   +  L +L  +M+ AA+ L+FE AA +RD+IK +K +   
Sbjct: 598 ---TKKKEEEEIEEFSKDDIETILINLEAEMYKAAEELDFERAAALRDQIKSMKDNFTG 653


>gi|126435595|ref|YP_001071286.1| excinuclease ABC subunit B [Mycobacterium sp. JLS]
 gi|126235395|gb|ABN98795.1| Excinuclease ABC subunit B [Mycobacterium sp. JLS]
          Length = 719

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/702 (50%), Positives = 481/702 (68%), Gaps = 30/702 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             +    +    F++ + Y P+GDQPAAI +L + I + E+  +LLG TG+GK+ T A +
Sbjct: 16  RPVEAMVRTGNRFEVVSPYQPAGDQPAAIDELERRIRAGERDVVLLGATGTGKSATTAWL 75

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP ++MAPNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+
Sbjct: 76  IERLQRPTLLMAPNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKD 135

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN+ ++R+RHSAT SLL R D +VV+SVSCIYG+G+ +SY    V+LK+GD V +  L
Sbjct: 136 SSINDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYMDRSVELKVGDEVPRDAL 195

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R D+   RGTFRV GD++EI PS+ E++A R+  FG+++E +   +PLTG
Sbjct: 196 LRLLVDVQYARNDMAFTRGTFRVRGDTVEIIPSY-EELAVRIEYFGDEVEALYYMHPLTG 254

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             +R V++++++  +HYV     +  A+  I++EL+ RL ELE +G+LLEAQRL  R  Y
Sbjct: 255 DVVRRVDSLRVFPATHYVAGPERMAQAISSIEKELEERLAELEGQGKLLEAQRLRMRTNY 314

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G C  IENYSR++ GR PG  P TL +Y PED LL +DESHVT+PQI GMY 
Sbjct: 315 DIEMMRQVGFCSGIENYSRHIDGRGPGTAPATLIDYFPEDFLLVIDESHVTVPQIGGMYE 374

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L ++GFRLPS +DNRPL +EE+      T+ +SATPG +E+ Q  G  VEQ+
Sbjct: 375 GDMSRKRNLVDFGFRLPSAVDNRPLTWEEFASRIGQTVYLSATPGPYEMSQSGGEFVEQV 434

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++  + Q++D+  EI    +   R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 435 IRPTGLVDPQVIVKPTKGQIDDLIGEIRKRTELDERVLVTTLTKKMAEDLTDYLLELGIR 494

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSEV TL R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 495 VRYLHSEVDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRST 554

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +V +YAD IT S++ AIDET RRR KQ+ +N++  I+P+ +++K
Sbjct: 555 RSLIQTIGRAARNVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEERGIDPKPLRKK 614

Query: 729 IMEVIDPILLEDAATTNISIDA---------------------------QQLSLSKKKGK 761
           I +++D +  E   T  + +                                ++ + +  
Sbjct: 615 IADILDQVYREADDTETVEVGGSGRNASRGRRAQGEPGRAVSAGIVEGRDTANMPRAELA 674

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
             +K L +QM  AA +L FE AARIRDEI+ LK     +G+D
Sbjct: 675 DLIKDLTEQMMTAARDLQFELAARIRDEIQDLKKE--LRGMD 714


>gi|300858355|ref|YP_003783338.1| UvrABC system protein B [Corynebacterium pseudotuberculosis FRC41]
 gi|300685809|gb|ADK28731.1| UvrABC system protein B [Corynebacterium pseudotuberculosis FRC41]
 gi|302330624|gb|ADL20818.1| excinuclease ABC subunit B [Corynebacterium pseudotuberculosis
           1002]
          Length = 699

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/697 (51%), Positives = 476/697 (68%), Gaps = 11/697 (1%)

Query: 116 LLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
                   +      +    +    F + ++Y P+GDQPAAI +L   +   E+  +LLG
Sbjct: 3   FAAEHPELSVSDFRPVGEIERTSGTFHVVSEYKPAGDQPAAIEELDARLDRGERDVVLLG 62

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GK+ T A +IE  QRP +VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPE
Sbjct: 63  ATGTGKSATAAWLIEQQQRPTLVMAPNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPE 122

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AY+ +TDTYIEK+SSIN+ ++R+RH AT SLL R D +VVSSVSCIYG+G+ +SY    V
Sbjct: 123 AYIAQTDTYIEKDSSINDDVERLRHRATSSLLSRRDVVVVSSVSCIYGLGTPQSYLDRSV 182

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            LK+G+ VE+   L  LV  QY R DIG  RGTFRV GD+++I P++ E+VA RV  FG+
Sbjct: 183 MLKVGEEVERDRFLRLLVDIQYDRNDIGFTRGTFRVKGDTVDIIPAY-EEVAVRVEFFGD 241

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ +   +PLTG  IR VE ++I+  +HYV     +  A++ IKEEL  RL +LE  G+
Sbjct: 242 EIDALYYIHPLTGDVIRRVEEVRIFPATHYVAGLERMAKAIEGIKEELADRLTDLENRGK 301

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRL  R  YDLEM+E  G C  IENYSR+L GR  G  P TL +Y P D L  +DE
Sbjct: 302 LLEAQRLRMRTEYDLEMIEQVGFCSGIENYSRHLDGREAGSAPATLLDYFPADFLTIIDE 361

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVT+PQI GM+ GD  RK  L E+GFRLPS +DNRPLR+EE+      T+ +SATPG +
Sbjct: 362 SHVTVPQIGGMFEGDMSRKRNLVEFGFRLPSALDNRPLRWEEFEQRVGQTVYMSATPGDY 421

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           EL    G  VEQ+IRPTGL+DP +++R  + Q++D+  EI    Q+  R+L+T LTK+MA
Sbjct: 422 ELAAAGGEYVEQVIRPTGLLDPKIDVRPTKGQIDDLIHEIRQRTQKQERVLVTTLTKKMA 481

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL E N+RVRY+HS++ TL+R+E++R LRLG++DVLVGINLLREGLD+PE  LVA
Sbjct: 482 EDLTDYLLENNVRVRYLHSDIDTLQRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVA 541

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS  SLIQTIGRAARNV+ +VI+YAD +T S+Q AIDET RRREKQ+ +N
Sbjct: 542 ILDADKEGFLRSTKSLIQTIGRAARNVSGEVIMYADRVTDSMQYAIDETERRREKQIAYN 601

Query: 716 KKHNINPQSVKEKIMEVIDPILL--------EDAATTNISIDAQQLSLSKKKGKAHLKSL 767
            +H I+PQ +++KI +++D +          E +A   I+      ++   K +  +  L
Sbjct: 602 TEHGIDPQPLRKKIADILDQVQEARGETASQEASADAAIAEKRDLSAMPADKLEVLISEL 661

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
             QM  AA  L FE A R+RDEI  LK     +G+ +
Sbjct: 662 TAQMGEAARELKFELAGRLRDEIVDLKKE--LRGMRE 696


>gi|302873269|ref|YP_003841902.1| excinuclease ABC, B subunit [Clostridium cellulovorans 743B]
 gi|307688564|ref|ZP_07631010.1| excinuclease ABC subunit B [Clostridium cellulovorans 743B]
 gi|302576126|gb|ADL50138.1| excinuclease ABC, B subunit [Clostridium cellulovorans 743B]
          Length = 658

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/658 (51%), Positives = 466/658 (70%), Gaps = 5/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI  + + + + +K Q LLGVTGSGKTFTMA +IE +Q+P +
Sbjct: 1   MEEFKIVSEYKPTGDQPQAIESISERVLAGDKFQTLLGVTGSGKTFTMANIIEKVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF+ FFP  AVEYFVSYYDYYQPEAYV +TDT+IEK++SIN++IDR
Sbjct: 61  VLAHNKTLAAQLCSEFREFFPDAAVEYFVSYYDYYQPEAYVAQTDTFIEKDASINDEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G+ + Y ++ + L+ G   ++ E++  L+  QY
Sbjct: 121 LRHSATAALFERKDVIIVASVSCIYGLGNPDEYRKLSLSLRKGMEKDRDEIMRKLIDMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI  +R TFRV GD ++IFP+  + V  +V  FG +I+ I EF  LTGQ +R ++ +
Sbjct: 181 ERNDINFVRATFRVRGDILDIFPASSQKVGIKVEFFGEEIDRIREFDVLTGQILRELKHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+ + + T+  ++  I+ EL  R+ EL  E +LLEAQRL+QR  +D+EM+   G
Sbjct: 241 LIFPASHFASSKETVERSIGKIEAELDERVKELLAEEKLLEAQRLKQRTNFDIEMIREMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR + GRN GEPP TL ++ PED L+F+DESHVT+PQ+  MY GD  RK  L
Sbjct: 301 YCQGIENYSRIMDGRNKGEPPKTLIDFFPEDFLMFIDESHVTLPQVRAMYGGDRSRKEAL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLP   DNRPL+FEE+       + VSATP  +E +     + EQIIRPTGL+DP
Sbjct: 361 VNYGFRLPCAYDNRPLKFEEFEEKLKQVVFVSATPAKYEFDHSTN-VAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    Q++D+Y  I     +G RIL+T LTK+MAEDLT+YL E  ++  Y+HS+V 
Sbjct: 420 IIEVRPIDGQIDDLYSSIQETIVRGFRILVTTLTKKMAEDLTDYLKEMGVKTNYLHSDVT 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T++R++II++LR+G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS TSLIQT+GR
Sbjct: 480 TIDRMKIIKELRMGDFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSNTSLIQTVGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN +SKVI+YAD IT S+   I ET RRR+ Q+++N+ HNI P ++ + I + I    
Sbjct: 540 AARNADSKVIMYADKITDSMSYTIKETERRRKIQIDYNEAHNITPTTIIKGIRDNIQIST 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + +     ++ +    ++S++  K  + SL K+M   A  L FE AA +RDEI +LK+
Sbjct: 600 IAEEEAVYLTEE----TMSQEDLKKKIASLEKEMKAVAKELQFERAAELRDEINKLKT 653


>gi|33601256|ref|NP_888816.1| excinuclease ABC subunit B [Bordetella bronchiseptica RB50]
 gi|81837009|sp|Q7WK66|UVRB_BORBR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|33575691|emb|CAE32769.1| excinuclease ABC subunit B [Bordetella bronchiseptica RB50]
          Length = 675

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/644 (55%), Positives = 466/644 (72%), Gaps = 1/644 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F +   Y P+GDQP AI  L +G+      Q LLGVTGSGKT+TMA +I  + RPA+V
Sbjct: 12  SPFHLYQPYPPAGDQPGAIDALTEGVSDGLMFQTLLGVTGSGKTYTMANMIARLGRPALV 71

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++M
Sbjct: 72  LAPNKTLAAQLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQM 131

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+SLLER D ++V +VSCIYGIG+   Y  M++ L+ GD + ++E+L+ LV  QY 
Sbjct: 132 RLSATKSLLERRDTVIVGTVSCIYGIGNPGDYHAMVLILRTGDRISRREVLARLVAMQYT 191

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RG FRV G++I+IFP+   ++A R+++F ++IE +  F PLTG+  + +    
Sbjct: 192 RNDADFTRGVFRVRGETIDIFPAESPELALRLTLFDDEIESLELFDPLTGRVRQKLPRFT 251

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYVTPR T+  A++ IKEEL+ RL +L  +G+L+EAQRLEQR  +DLEML+  G 
Sbjct: 252 VYPGSHYVTPRETVLRAIETIKEELRERLAQLIADGKLVEAQRLEQRTRFDLEMLQELGF 311

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHVTI Q+ GMYRGD  RK TL 
Sbjct: 312 CKGIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQLGGMYRGDRSRKETLV 371

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPLR EE+       + VSATP ++E E     +VEQ++RPTGLVDP 
Sbjct: 372 QYGFRLPSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHADN-VVEQVVRPTGLVDPI 430

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R A TQV+D+  EI+  A    R+L+T LTKRMAEDLT++L E  +RVRY+HS++ T
Sbjct: 431 VEVRPAHTQVDDLLGEIHKRAALQERVLVTTLTKRMAEDLTDFLSEHGVRVRYLHSDIDT 490

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 491 VERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 550

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N + ILYAD IT S++ AIDET RRR KQ++HN  H I  + V + + E+ID ++ 
Sbjct: 551 ARNLNGRAILYADRITDSMRRAIDETERRRAKQIQHNTDHGITARGVSKAVRELIDGVVA 610

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                   S    ++   +K     ++ L K M   A NL FE+
Sbjct: 611 PAGHDALESAVPAEVLTDEKAMAREIRRLEKLMMDHARNLEFEQ 654


>gi|160914503|ref|ZP_02076718.1| hypothetical protein EUBDOL_00509 [Eubacterium dolichum DSM 3991]
 gi|158433661|gb|EDP11950.1| hypothetical protein EUBDOL_00509 [Eubacterium dolichum DSM 3991]
          Length = 658

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/658 (52%), Positives = 459/658 (69%), Gaps = 3/658 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + ++Y P GDQP AI  L++G+   +K Q+LLG TG+GKTFT++ VI  + +P ++
Sbjct: 4   KLFDLVSEYKPQGDQPKAIKALVEGVKEGKKQQVLLGATGTGKTFTISNVIAQVNKPTLI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
              NK LA QLYSEFK FFPHN VEYFVS +DYYQPEAY+P +DTYI+K ++ N ++D +
Sbjct: 64  FVHNKTLAGQLYSEFKEFFPHNRVEYFVSNFDYYQPEAYIPSSDTYIDKNATTNMELDML 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R +A  S+LER D I+V+SV+CIYG  + E Y  M   +++GD +++KEL+S LV +QY 
Sbjct: 124 RMAAVNSVLERRDTIIVASVACIYGASNPEQYRDMFFSIRVGDVIDRKELMSKLVARQYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ + RG FRV GD IE+ P H +    R+ MF ++IE I E  PLTG+ +       
Sbjct: 184 RNDMELGRGCFRVRGDVIEVAPGHSDAYILRIEMFDDEIERICEVDPLTGKVLNAYTVYV 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  S Y T +  +N A   I EEL+ RL  LE+EG+LLE QRLEQR  YD+E L   G 
Sbjct: 244 VYPASGYATKQEIINRAADTIGEELEERLAVLEQEGKLLEKQRLEQRTRYDMEALREFGV 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR++ GR PGE P TLF+Y P+D LL VDESHV++PQI GMY GD  RK TL 
Sbjct: 304 CPGIENYSRHIDGRKPGERPYTLFDYFPDDFLLVVDESHVSLPQIRGMYNGDRARKETLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            YGFRLPS +DNRP+RFEE+  +    I VSATPG +ELE+  G IVEQIIRPTGL+DP 
Sbjct: 364 NYGFRLPSALDNRPMRFEEFEDMIHQAIFVSATPGDYELEKTHGEIVEQIIRPTGLLDPL 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V +R  + Q++D+ DEI    ++  R+L+T LT RMAEDLT YL   + +V ++H EVKT
Sbjct: 424 VSVRPTQGQIDDLTDEIRKRIEKNERVLITTLTVRMAEDLTSYLKGMDFKVAWLHHEVKT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIRDLR GK+DVL+GINLLREGLDIPE  L+AILDADKEGFLRS+ SLIQ IGRA
Sbjct: 484 IERTEIIRDLRKGKYDVLIGINLLREGLDIPEVSLIAILDADKEGFLRSERSLIQIIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN + +VI+Y D IT S+  A++ET+RRR  Q  +NK+H+I PQ++ + I EV+     
Sbjct: 544 ARNAHGEVIMYGDHITDSMHKALEETSRRRAIQTAYNKEHHITPQTIIKPIHEVVRSKET 603

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           ++     I    ++ +++KK     + +L+K+M  AA  L+FE AA++RD +  L+S+
Sbjct: 604 QEMTAKYIH---KKAAVNKKDKDKLIANLQKEMKEAAKVLDFERAAQLRDILFELQST 658


>gi|325002615|ref|ZP_08123727.1| excinuclease ABC subunit B [Pseudonocardia sp. P1]
          Length = 742

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/723 (48%), Positives = 476/723 (65%), Gaps = 39/723 (5%)

Query: 112 SDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQ 171
           +D PL  +           +    +    FQ+ +D  P+GDQP AIA L + + + E+  
Sbjct: 27  TDTPLAHS-------EHRPVGEIERKDGRFQVVSDLQPAGDQPTAIADLDRRLRAAEQDI 79

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           +L+G TG+GK+ T A +IE  QRP +VMAPNK LAAQL +E +   PHNAVEYFVSYYDY
Sbjct: 80  VLMGATGTGKSATTAWLIEQQQRPTLVMAPNKTLAAQLANELREMLPHNAVEYFVSYYDY 139

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           YQPEAY+ +TDTYIEK+SS+N+ ++R+RHSAT +LL R D +VV+SVSCIYG+G+ +SY 
Sbjct: 140 YQPEAYIAQTDTYIEKDSSVNDDVERLRHSATMNLLSRRDVVVVASVSCIYGLGTPQSYL 199

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              V L +G+ VE+  LL  LV  QY R D+   RGTFRV GD++EI P++ E++A R+ 
Sbjct: 200 DRSVALAVGEEVERDRLLRLLVDIQYTRNDMSFTRGTFRVRGDTVEIIPAY-EELALRIE 258

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            FG++IE +    PLTG  +  V  I+I+  +HYV     +  A+  I+ EL+ RL +LE
Sbjct: 259 FFGDEIEALYHLNPLTGDTVEQVGEIRIFPATHYVAGPDRMERAVSDIEAELEQRLEQLE 318

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
            +G+LLEAQRL  R  YD+EM+   G C  IENYSR++ GR  G  P TL +Y PED LL
Sbjct: 319 NQGKLLEAQRLRMRTQYDIEMIRQVGFCSGIENYSRHIDGRGAGTAPATLIDYFPEDFLL 378

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +DESHVT+PQI GMY GD  RK  L EYGFRLPS +DNRPL +EE+      T+ +SAT
Sbjct: 379 VIDESHVTVPQIGGMYEGDMSRKRNLVEYGFRLPSAVDNRPLTWEEFADRIGQTVYLSAT 438

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
           PG +EL +  G  VEQ+IRPTGLVDP V ++  + Q++D+  EI    ++  R+L+T LT
Sbjct: 439 PGPYELNRTGGEFVEQVIRPTGLVDPEVVVKPTKGQIDDLVAEIRDRTERDERVLVTTLT 498

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           K+MAEDLT+YL E  I+VRY+HSEV TL R+E++R LR G++DVLVGINLLREGLD+PE 
Sbjct: 499 KKMAEDLTDYLLELGIKVRYLHSEVDTLRRVELLRQLRSGEYDVLVGINLLREGLDLPEV 558

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
            LVAILDADKEGFLRS TSLIQTIGRAARNV+ +V +YAD IT S+Q AIDET RRR KQ
Sbjct: 559 SLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMYADRITDSMQYAIDETDRRRAKQ 618

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID---------------------- 749
           + +N +  I+PQ ++++I +++D +  E   T ++ +                       
Sbjct: 619 VAYNTERGIDPQPLRKRIADILDQVYREAEDTESVPVGGSGRNASRGKRASGEAGRAPSA 678

Query: 750 -------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGL 802
                       + + +    ++ +  QM  AA +L FE AAR+RDEI  LK     +G+
Sbjct: 679 GSAGVPAKDTAGMPRAELADLIQQMNDQMLTAARDLQFELAARLRDEIGDLKKE--LRGM 736

Query: 803 DDS 805
           D +
Sbjct: 737 DAA 739


>gi|323498199|ref|ZP_08103201.1| excinuclease ABC subunit B [Vibrio sinaloensis DSM 21326]
 gi|323316627|gb|EGA69636.1| excinuclease ABC subunit B [Vibrio sinaloensis DSM 21326]
          Length = 661

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/658 (55%), Positives = 475/658 (72%), Gaps = 11/658 (1%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQP AI QLL+G+ S    Q LLGVTGSGKTFT+A VI   QRPAI++APNK LAAQLY 
Sbjct: 1   DQPTAINQLLEGLDSGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLAPNKTLAAQLYG 60

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR SAT++LLER D
Sbjct: 61  EMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKD 120

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            I+V+SVS IYG+G  ESY QM++ ++ GD ++Q+++L  L + QY R D+   RG FRV
Sbjct: 121 AIIVASVSAIYGLGDPESYLQMMLHIRRGDVMDQRDILRRLAELQYSRNDVAFERGQFRV 180

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKIYANSHYVTPRP 390
            G+ I+IFP+  +  A R+ MF ++I+ IS F PLTG    R++    IY  +HYVTPR 
Sbjct: 181 RGEVIDIFPAESDQDAVRIEMFDDEIDCISVFDPLTGVVKQRDLPRFTIYPKTHYVTPRE 240

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
            +  A+++IK EL+ R   L    +LLE QR+ QR  +D+EM+   G C  IENYSRYL+
Sbjct: 241 RILDAIEHIKLELESRKKHLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLS 300

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
           GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E+GFRLPS +DN
Sbjct: 301 GRQEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVEFGFRLPSALDN 360

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
           RP++FEE+  + P TI VSATPG++ELE+  G I +Q++RPTGL+DP +E+R   TQV+D
Sbjct: 361 RPMKFEEFESIAPQTIFVSATPGNYELEKSDGEIADQVVRPTGLLDPQLEVRPVATQVDD 420

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  EI + + Q  R+L+T LTKRMAEDLTEYL E ++RVRY+HS++ T+ER+EIIRDLRL
Sbjct: 421 LLSEIRIRSAQDERVLVTTLTKRMAEDLTEYLTEHDVRVRYLHSDIDTVERVEIIRDLRL 480

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAARN++ K ILYA
Sbjct: 481 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNISGKAILYA 540

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI-- 748
           D+ITKS++ A+DET RRREKQ E+N K  I PQ++K  I ++++   +  +     S   
Sbjct: 541 DSITKSMKKAMDETNRRREKQQEYNTKMGIEPQALKRNIKDIMELGDITKSKKQRASKTV 600

Query: 749 --------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
                         ++ ++    +  L  QM+  A +L FE AA  RD+I +L+    
Sbjct: 601 PLSKVAEPSQSYDVMTPQELDKEIAKLEAQMYQHAQDLEFELAAEKRDQIDKLRQQFI 658


>gi|209527301|ref|ZP_03275811.1| excinuclease ABC, B subunit [Arthrospira maxima CS-328]
 gi|209492289|gb|EDZ92634.1| excinuclease ABC, B subunit [Arthrospira maxima CS-328]
          Length = 665

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/666 (52%), Positives = 459/666 (68%), Gaps = 4/666 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F+++  + P+GDQP AIAQL++ I S      LLG TG+GKTFT+A  I  + RP +
Sbjct: 1   MVKFELKAPFQPTGDQPLAIAQLIQSIKSGHPKTTLLGATGTGKTFTIAATIAQLGRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKTASINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y    + L++G+ ++Q++LL  L   QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPTEYLNAAIPLRVGEDLDQRQLLRDLASIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D  I RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ +++++T+
Sbjct: 181 TRNDTEITRGRFRVRGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEVLQSLDTL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP   L+ A   I  ELK +L ELEK G+LLEAQRL+QR  YDLEML   G
Sbjct: 240 NIYPARHFVTPGDRLDAACDAIAAELKQQLAELEKAGKLLEAQRLDQRARYDLEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR PG PP  L +Y P+D LL VDESHVT+PQI  MY GD  RK  L
Sbjct: 300 YCNGVENYSRHLAGRLPGSPPECLVDYFPDDWLLVVDESHVTVPQIRAMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+ EE+       I+VSATPG WE+ Q QG +VEQ+IRPTG+VDP
Sbjct: 360 IEHGFRLPSAADNRPLKSEEFWQKVKQCILVSATPGDWEIAQSQGQVVEQVIRPTGVVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    QV+D+  EI     +  R+L+T LTKRMAEDLTEYL ER IRVRY+HSE++
Sbjct: 420 EIFVRPTTGQVDDLIAEIQERIPRNERVLVTTLTKRMAEDLTEYLQERGIRVRYLHSEIQ 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           +++RIEI++ L+ G+FDVL+G+NLLREGLD+P+  LVAI DADKEGFLR++ SLIQTIGR
Sbjct: 480 SIQRIEILQSLQEGEFDVLIGVNLLREGLDLPQVSLVAIFDADKEGFLRTERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V  + ILYAD +T S++ AI ET RRR  QLE+N+K+ I P+S+ +     I   L
Sbjct: 540 AARHVRGQAILYADNMTDSMRAAIAETNRRRTIQLEYNQKYGITPKSIHKTSSNAILAFL 599

Query: 738 LEDAATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                     ID    Q   L  ++    ++ L  +M  AA  L FEEAA+ RD I+ L+
Sbjct: 600 DVSRRLNYQQIDLPCPQVDDLPLEEIPTLIQQLEVRMKEAAQQLEFEEAAQFRDRIRILR 659

Query: 795 SSPYFQ 800
                +
Sbjct: 660 DKLVGR 665


>gi|91203251|emb|CAJ72890.1| strongly similar to UvrABC system protein B (excinuclease ABC
           subunit B) [Candidatus Kuenenia stuttgartiensis]
          Length = 655

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/660 (53%), Positives = 467/660 (70%), Gaps = 5/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + P GDQP AI +L++        Q LLGVTGSGKTFTMA VI A+ +P +
Sbjct: 1   MYDFELISPFEPEGDQPEAIRKLVENYRKNVTFQTLLGVTGSGKTFTMANVIAALGKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           VM  NK LAAQLYSEFK+FFP NAV YFVSYYDYYQPEAY+P+ D YIEKE++IN++IDR
Sbjct: 61  VMTHNKTLAAQLYSEFKDFFPKNAVGYFVSYYDYYQPEAYIPQRDIYIEKEATINQEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R +AT  L+ R D I+V+SVSCIYG+GS   Y +M + L  GD VE+  +L  L+  QY
Sbjct: 121 LRLAATSVLMSRKDVIIVASVSCIYGLGSPAEYQEMYLHLSKGDEVERDTVLKKLISIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D    RGTFRV GD IE+FP++ E+ A+RV +FG+++++IS   PLTG  ++ ++ +
Sbjct: 181 ERNDSHFRRGTFRVRGDVIEVFPAY-EEFAYRVELFGDEVDKISMIDPLTGNTLQKIKEV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+V P   +   ++ I  EL  RL +L    +LLEAQRLE R  YD+EML   G
Sbjct: 240 SVYPAKHFVMPEEKIERVVQSITAELNDRLKDLRSRDKLLEAQRLEARTRYDIEMLLEIG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+++GR PGEPP TLF+Y P+D  L VDESHV+ PQI+GMY GD  RK TL
Sbjct: 300 YCHGIENYSRHISGRAPGEPPYTLFDYFPKDFFLIVDESHVSTPQIAGMYHGDRARKETL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPLRF+EW       + VSATPG +EL++ Q  IVEQIIRPTGLVDP
Sbjct: 360 VEYGFRLPSALDNRPLRFDEWESRIKQILFVSATPGPYELKKSQNNIVEQIIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++ A+TQV D+  EI     +  R L+T LTKR+AEDL+ YL E  I+  Y+HSE+ 
Sbjct: 420 IIYVKPAKTQVNDLITEIKKRTLRKERTLVTTLTKRLAEDLSGYLKEEGIKCMYLHSEIN 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER+ I+R+LR+G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 AIERVTILRELRMGTFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
            ARNVN++VILY D ITKS++ AIDET RRR  Q  +NK+HNI P +++++I + I+  +
Sbjct: 540 TARNVNAEVILYGDEITKSMRRAIDETNRRRAIQSAYNKEHNITPATIQKEIKKGIESYI 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                      ++++  ++    + +L  L  +M  AA+ L FE AA +RD+I++LK S 
Sbjct: 600 SSHKIVYEAVAESEEEYIT----QEYLNELEAEMLKAAEELAFERAAELRDKIQQLKKSV 655


>gi|184200839|ref|YP_001855046.1| excinuclease ABC subunit B [Kocuria rhizophila DC2201]
 gi|183581069|dbj|BAG29540.1| UvrABC system protein B [Kocuria rhizophila DC2201]
          Length = 711

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/708 (48%), Positives = 479/708 (67%), Gaps = 38/708 (5%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
              ++ +  F++ +++ P+GDQP AIA+L + I   EK  +L+G TG+GK+ T A +IEA
Sbjct: 5   QKINRVVAPFEVVSEFQPAGDQPKAIAELSERIQGGEKDVVLMGATGTGKSATAAWLIEA 64

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +QRP +++  NK LAAQL +E +   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSI
Sbjct: 65  VQRPTLLLVQNKTLAAQLANELRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSI 124

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           NE+++R+RHSAT +LL R D +VVS+VSCIYG+G+ E Y + +V L +G  +++  LL  
Sbjct: 125 NEEVERLRHSATNALLTRRDTVVVSTVSCIYGLGTPEEYVKQMVTLAVGQEMDRDALLRQ 184

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
            V  QY R D+   RGTFRV GD++EI P + E+ A R+  FG++IE I   +PLTG+ I
Sbjct: 185 FVNMQYVRNDVDFHRGTFRVRGDTVEIIPMY-EENALRIEFFGDEIEAIYTLHPLTGEVI 243

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
              + + ++  SHYV     + TA++ I++EL+ RL ELE + +L+EAQRL  R  YDLE
Sbjct: 244 NEEQEMYVFPASHYVAGAERMATAIESIQQELQERLQELESQNKLVEAQRLRMRTQYDLE 303

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M+E  G C  IENYS ++ GR  G  P  L +Y P+D LL +DESHVT+PQI GMY GD 
Sbjct: 304 MMEQMGYCNGIENYSLHIDGRPRGSAPHCLLDYFPDDFLLIIDESHVTVPQIGGMYEGDM 363

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK TL ++GFRLPS MDNRPL++ E+       + +SATPG +E+ +    +VEQIIRP
Sbjct: 364 SRKRTLVDHGFRLPSAMDNRPLKWGEFLERIGQAMYMSATPGPYEMSKVDS-VVEQIIRP 422

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGLVDP V ++  + Q++D+ ++I L  ++  R+L+T LTKRMAEDLTEYL E  ++V+Y
Sbjct: 423 TGLVDPQVVVKPTKGQIDDLLEQIELRVERDERVLVTTLTKRMAEDLTEYLMEHGVKVQY 482

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS+V TL+R+E++R+LR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSL
Sbjct: 483 LHSDVDTLKRVELLRELRMGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSL 542

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARNV+ +V +YAD IT+S+ +AI+ET RRRE Q+ +N +H I+PQ +++KI +
Sbjct: 543 IQTIGRAARNVSGEVHMYADKITRSMDVAIEETNRRREIQVAYNTEHGIDPQPLRKKIAD 602

Query: 732 VIDPILLEDAATTNI--------------------------SIDAQQLSL--------SK 757
           + D +  ED  T  +                          +  A +  L          
Sbjct: 603 ITDQLAREDEDTKTLLAQRSAANNHTAPVKGGKGKNSEKDGAAAAAESKLLRDGVAAAPA 662

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           +     ++SL +QM  AA  L FE A R+RDEI  LK     + + D+
Sbjct: 663 EDLVELIESLSEQMRNAAAELKFELAGRLRDEIADLKKE--LRRMKDA 708


>gi|72383085|ref|YP_292440.1| excinuclease ABC subunit B [Prochlorococcus marinus str. NATL2A]
 gi|90111044|sp|Q46IE1|UVRB_PROMT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|72002935|gb|AAZ58737.1| Excinuclease ABC subunit B [Prochlorococcus marinus str. NATL2A]
          Length = 678

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/679 (52%), Positives = 464/679 (68%), Gaps = 17/679 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  +++Q  Y P GDQPAAI  L+ G++  EK Q LLG TG+GKTFT+A +I    RPA+
Sbjct: 1   MPEYKLQAPYTPKGDQPAAIKGLVGGVNDGEKFQTLLGATGTGKTFTIANLIAQTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K SSINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPDNAVEYFISYYDYYQPEAYVPVSDTYIAKTSSINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER+D IVV+S+SCIYG+G    Y +  V+ ++G S++ +  L SLV  QY
Sbjct: 121 LRHSATRSLFERDDVIVVASISCIYGLGIPSEYLKASVKFQVGQSIDLRSCLRSLVSNQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI I RG FRV GD +EI P++ +D   R+ +FG+++E IS   P TG+ +  +++I
Sbjct: 181 TRNDIEISRGRFRVRGDVLEIGPAY-DDRLVRLELFGDEVESISYVDPTTGEILNKLDSI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP+  L++A+K IK+ELK RL  L +EG+LLEAQRLEQR  YDLEML+  G
Sbjct: 240 NIYPAKHFVTPKDRLDSAIKAIKKELKDRLEFLNQEGKLLEAQRLEQRTIYDLEMLKEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L+GR PG  P  L +Y P+D LL +DESHVT PQ+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLSGREPGSAPECLIDYFPKDWLLLIDESHVTCPQLRAMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+  E+      T+ +SATPG WEL Q    IVEQ+IRPTG++DP
Sbjct: 360 IDHGFRLPSAADNRPLKDIEFWNKAKQTVFISATPGDWELSQSTKNIVEQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    QV+D+  EI   A +  RIL+T LTKRMAEDLT+YL E  IRVRY+HSE+ 
Sbjct: 420 LVEVRPTHGQVDDLLFEIRKRASKNQRILVTTLTKRMAEDLTDYLSENKIRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LV ILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAQRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V    +LYAD +T S+  AI ET RRRE Q  +N +H I P+   +K    I   L
Sbjct: 540 AARHVEGLALLYADKMTDSMAKAISETERRREIQNIYNIEHGITPKPAGKKASNSILSFL 599

Query: 738 L------EDAATTNI----------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
                  +D +T +           S       +S +     ++ L  +M + A +L+FE
Sbjct: 600 EISRRLNQDGSTDDFVDIADKLIEHSAKDSDSGVSLESLPELIEKLESKMKIKAKDLDFE 659

Query: 782 EAARIRDEIKRLKSSPYFQ 800
            AA +RD IK+L+     +
Sbjct: 660 TAAILRDRIKKLRHRLVGR 678


>gi|333027919|ref|ZP_08455983.1| putative excinuclease ABC subunit B [Streptomyces sp. Tu6071]
 gi|332747771|gb|EGJ78212.1| putative excinuclease ABC subunit B [Streptomyces sp. Tu6071]
          Length = 720

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/712 (49%), Positives = 479/712 (67%), Gaps = 42/712 (5%)

Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185
                +    + +  F++ + Y PSGDQP AIA+L K +   EK  +LLG TG+GK+ T 
Sbjct: 2   EDMRPVTQIERTVAPFEVVSPYSPSGDQPTAIAELEKRVKGGEKDVVLLGATGTGKSATT 61

Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           A +IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYI
Sbjct: 62  AWMIERLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYI 121

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
           EK+SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V LK+GD +++
Sbjct: 122 EKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGDELDR 181

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
            ELL   V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +P
Sbjct: 182 DELLRRFVDIQYTRNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSLLHP 240

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           LTG+ I + + + ++  SHY+     +  A+K I++EL++RL ELEK+G+LLEAQRL  R
Sbjct: 241 LTGEVISDDQQVYVFPASHYIAGPERMERAIKGIEKELEVRLAELEKQGKLLEAQRLRMR 300

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
            TYD+EML   G+C  +ENYS +   R PG PP TL +Y PED LL +DESHVT+PQI  
Sbjct: 301 TTYDIEMLRQIGTCSGVENYSMHFDDREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGA 360

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MY GD  RK TL ++GFRLPS +DNRPL++EE+       + +SATPG++EL +  G  V
Sbjct: 361 MYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQKRIGQAVYLSATPGNYELSRSDG-FV 419

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           EQIIRPTGLVDP + ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E 
Sbjct: 420 EQIIRPTGLVDPEIVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMAEDLTDYFLEL 479

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            I VRY+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFL
Sbjct: 480 GINVRYLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFL 539

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS TSLIQTIGRAARNV+ +V +YAD IT +++ AIDET RRR KQ+ +N +  I+PQ +
Sbjct: 540 RSGTSLIQTIGRAARNVSGQVHMYADKITPAMERAIDETNRRRAKQIAYNTERGIDPQPL 599

Query: 726 KEKIMEVIDPILLEDAATTNISIDAQQLSLSKK--------------------------- 758
           ++KI +++  I  E+  T ++     + +   K                           
Sbjct: 600 RKKINDIVASIAREEVDTDSLLGTGYRQAKEGKGAKTPVPALGGKATAESGKAAKGKAKK 659

Query: 759 -------------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                             ++ +  +M  AA +L FE AAR+RDE+  +K   
Sbjct: 660 GKAATAPTDQPGAALAQQIEEMTDRMRAAAADLQFEVAARLRDEVSEMKKEL 711


>gi|325478234|gb|EGC81353.1| excinuclease ABC, B subunit [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 656

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/659 (53%), Positives = 466/659 (70%), Gaps = 8/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI +L KGI      Q+L GVTGSGKTFTMA +I+ +QRP +V+A
Sbjct: 3   FELNSEYKPRGDQPYAIEKLSKGIEDGAHHQILRGVTGSGKTFTMANIIQNVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL++EFK FFP+NAVEYFVSYYDYYQPEAYV  TDTYI K+SSIN++ID+MRH
Sbjct: 63  HNKTLAYQLFTEFKEFFPNNAVEYFVSYYDYYQPEAYVAATDTYIAKDSSINDEIDKMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIYG+G    Y +++V L+ G  +  ++++  L+  QY R 
Sbjct: 123 SATMALFERRDVIIVASVSCIYGLGDPIEYQKLVVSLRPGQEISPEDVMRKLIDVQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFR  GD +++FP+  +  A R   FG++I++ISEF  LTG+    +    IY
Sbjct: 183 DVEFTRGTFRRRGDILDVFPAGFDQKAIRFEFFGDEIDQISEFDSLTGKVTAKISHAYIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T       A+  I+EEL+ RL EL KE +LLEAQRLEQR  YD+EML   G C 
Sbjct: 243 PASHYATSSEKTEKAIVSIEEELEERLAELNKENKLLEAQRLEQRTKYDIEMLREIGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y PED +L VDESHV+IPQ+ GMY GD  RK  L ++
Sbjct: 303 GIENYSRHLSQRPAGSRPYTLIDYFPEDFVLMVDESHVSIPQVGGMYEGDRSRKQNLVDF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  L    + VSATPG +E+E+  G +V+QIIRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLKFHEFEKLINQAVYVSATPGPYEMEKTNGKMVDQIIRPTGLLDPLIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ +E++    +  R+L+T LTK+MAEDLT +L E  I+V+Y+HS++KT+E
Sbjct: 423 VRPTENQIDDLIEEVHKTIAKKERVLVTTLTKKMAEDLTTFLQENGIKVKYLHSDIKTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR+LRLG+FDVLVGINLLREGLDIPE  L+ ILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RSEIIRELRLGEFDVLVGINLLREGLDIPEVSLITILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+Y D ITKS+Q AIDET RRR+ Q + N+K+ I P ++++ I E+I       
Sbjct: 543 NSEGRVIMYGDKITKSMQKAIDETERRRKIQEDFNEKNGITPTTIRKNIGEIIQI----- 597

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
              T    + +    SK   +A L ++  +M+ AA+ L+FE AA +RD+IK +K +   
Sbjct: 598 ---TKKEEEEEIEEFSKDDIEAILINMEAEMYKAAEELDFERAANLRDQIKNMKENFTG 653


>gi|158338625|ref|YP_001519802.1| excinuclease ABC subunit B [Acaryochloris marina MBIC11017]
 gi|189037950|sp|B0CE09|UVRB_ACAM1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|158308866|gb|ABW30483.1| excinuclease ABC, B subunit [Acaryochloris marina MBIC11017]
          Length = 668

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/666 (53%), Positives = 452/666 (67%), Gaps = 4/666 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F +   + P GDQP AI +L   + S    Q LLG TG+GKTFTMAKVIE + +P +
Sbjct: 1   MTAFDLHAPFVPKGDQPQAIEKLTTHLQSGHSRQTLLGATGTGKTFTMAKVIEEIGKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL +E ++FFP+NAVEYF+SYYDYYQPEAY+P TDT+IEK +SINE+ID 
Sbjct: 61  ILAHNKTLAAQLCNEIRSFFPNNAVEYFISYYDYYQPEAYIPVTDTFIEKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  + LK+G  V+Q++LL +L   QY
Sbjct: 121 LRHSATRSLFERQDVIVVASISCIYGLGIPAEYLKASIPLKVGAEVDQRQLLRNLAAVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ ++++E +
Sbjct: 181 TRNDVDLGRGRFRVKGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYVDPVTGETLQSLEGL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+VTP   L  A++ I  E   ++  LE  G+LLEAQRL QR  YDLEML   G
Sbjct: 240 NVYPARHFVTPTERLEMAVEAIDAERTAQVEHLEGAGKLLEAQRLNQRTRYDLEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  GEPP  L +Y P+D LL VDESHVT+PQI GMY GD  RK  L
Sbjct: 300 YCNGVENYSRHLAGRQAGEPPECLVDYFPKDWLLIVDESHVTVPQIRGMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+       + VSATPG WE+E  +  +VEQ+IRPTG+VDP
Sbjct: 360 IDHGFRLPSAADNRPLKSEEFWQKVGQCVFVSATPGLWEIELSENRVVEQVIRPTGVVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    QV+D+  EI     +  R L+T LTKRMAEDLTEY  ER +RVRY+HSE+ 
Sbjct: 420 EIFVRPTTGQVDDLLAEIQERVGRQERTLITTLTKRMAEDLTEYFEERGVRVRYLHSEIN 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            ++RIEI+RDLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 AIQRIEILRDLREGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V  + ILYAD +T S++ AI ET RRR+ QL +NKKH I PQ VK+     I   L
Sbjct: 540 AARHVRGQAILYADNLTDSMEKAISETERRRKIQLAYNKKHGITPQPVKKGSDNAILAFL 599

Query: 738 LEDAATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                     ++    Q   L  +     +  L  QM  AA NL FEEAA+ RD IK L+
Sbjct: 600 EVSRRLNTQELEDAYEQADDLPLESVPELITQLEAQMKEAAKNLEFEEAAKYRDRIKNLR 659

Query: 795 SSPYFQ 800
           S    Q
Sbjct: 660 SKLLGQ 665


>gi|108759548|ref|YP_630851.1| excinuclease ABC subunit B [Myxococcus xanthus DK 1622]
 gi|108463428|gb|ABF88613.1| excinuclease ABC, B subunit [Myxococcus xanthus DK 1622]
          Length = 704

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/659 (54%), Positives = 474/659 (71%), Gaps = 2/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ +++ P GDQP AI +L +G+   ++ Q LLGVTGSGKTFTMA +I  +QRP +
Sbjct: 1   MSDFQLVSEHSPGGDQPRAIGELTQGLLRGDRYQTLLGVTGSGKTFTMANIIANVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           VMA NK LAAQLY EFK  FPHNAVEYFVSYYDYYQPEAYVP TDT+IEK+SSIN+ I+R
Sbjct: 61  VMAHNKTLAAQLYGEFKALFPHNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSINDNIER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSAT SL  R+D I+V+SVSCIYG+G+  SY ++ V+  +G+ + +   +  LV+ QY
Sbjct: 121 MRHSATHSLRTRDDVIIVASVSCIYGLGAARSYVELAVRAAVGEEMGRDTFMRKLVEAQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR D+   RGTFR  GD++E+FP++ E+ A RVS FG+++E ++EF PL G  +  +E I
Sbjct: 181 KRNDLDFHRGTFRARGDTVEVFPAYEEERAVRVSFFGDEVERVTEFDPLRGVTLGALEKI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV        A++ I++EL  +L   ++EG+LLEAQRLEQR  +DLEM+E  G
Sbjct: 241 VIFPASHYVAEEDVRRRAIQTIRDELSEQLQTFKREGKLLEAQRLEQRAMFDLEMIEQVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+ +GR  GEPPP L +Y P + L+ +DESH T+PQI  MYRGD  RK TL
Sbjct: 301 YCSGIENYSRHFSGRAAGEPPPCLIDYFPRNLLVMLDESHQTVPQIGAMYRGDRARKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             +GFRLPS +DNRPL+F E+  L P  I VSATP  +EL++ QG++VEQIIRPTGL DP
Sbjct: 361 VGFGFRLPSALDNRPLKFGEFEELVPQAIFVSATPAEYELQKSQGVVVEQIIRPTGLTDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VEIR    QV+D+ +E+     +  R+L+T LTKRMAEDLTEY  +  +RVRY+HS++ 
Sbjct: 421 EVEIRPVGNQVDDLLEEVRQRVSRSERVLVTTLTKRMAEDLTEYFSDVGVRVRYLHSDID 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER+ IIRDLR G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 481 AIERMAIIRDLRKGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHVSLIQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--P 735
           AARNV+ +VI+YAD +T S++ A++ETTRRR+ Q  +N++H I P+SVK  I ++ +   
Sbjct: 541 AARNVSGRVIMYADNVTDSMKKALEETTRRRDIQRAYNQEHGITPRSVKSNITDLSEHAA 600

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               D     ++ + +   L  K+ K  ++   K M  AAD + FE+AA  RD ++ LK
Sbjct: 601 YDAGDVGALPMAAEGEDDVLQPKEIKRLIEEFTKDMLAAADEMQFEKAAEYRDRVQLLK 659


>gi|255324628|ref|ZP_05365745.1| excinuclease ABC subunit B [Corynebacterium tuberculostearicum
           SK141]
 gi|255298534|gb|EET77834.1| excinuclease ABC subunit B [Corynebacterium tuberculostearicum
           SK141]
          Length = 697

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/685 (51%), Positives = 481/685 (70%), Gaps = 9/685 (1%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
               ++   +    FQ+ ++Y P+GDQPAAIA+L + ++  E+  +L+G TG+GK+ T A
Sbjct: 14  EHRVVSEVERTPGEFQVVSEYEPAGDQPAAIAELDERLNRDERDVVLMGATGTGKSATAA 73

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            +IE  QRP +VMAPNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIE
Sbjct: 74  WLIEKQQRPTLVMAPNKTLAAQLANELRQLLPHNAVEYFVSYYDYYQPEAYIAQTDTYIE 133

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+SSINE ++R+RHSAT +LL R D +VVSSVSCIYG+G+ +SY    V + + + +++ 
Sbjct: 134 KDSSINEDVERLRHSATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVIISVDEELDRD 193

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
             L  LV  QY+R D+G  RGTFR  GD+++I P++ E+ A R+  FG+DI+ +   +P+
Sbjct: 194 RFLRLLVDIQYERNDVGFTRGTFRAKGDTVDIIPAY-EERAVRIEFFGDDIDSLYYIHPV 252

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG  I  V+ ++I+  +HYV     +  A+  IKEEL  RL +LE  G+LLEAQRL  R 
Sbjct: 253 TGDVIEEVDEVRIFPATHYVAGPERMEKAVAAIKEELAERLEDLENRGKLLEAQRLRMRT 312

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
            YDLEM+E  G C  IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM
Sbjct: 313 EYDLEMIEQVGFCSGIENYSRHVDGRPAGSAPATLLDYFPEDFLTIIDESHVTVPQIGGM 372

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           + GD  RK  L E+GFRLPS +DNRPL F+E+      T+ +SATPG +EL    G  VE
Sbjct: 373 FEGDMSRKRNLVEFGFRLPSAVDNRPLTFDEFEQRVGQTVYMSATPGDFELTSSDGEYVE 432

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q+IRPTGLVDP V ++  ++Q++D+ DE+     Q  R+L+T LTKRMAEDLT+YL E+ 
Sbjct: 433 QVIRPTGLVDPKVTVKPTKSQIDDLIDEVRTRISQQERVLVTTLTKRMAEDLTDYLLEQG 492

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           I+VRY+HS++ TL+R+E++R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR
Sbjct: 493 IKVRYLHSDIDTLQRVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLR 552

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S TSLIQTIGRAARNV+ +VI+YAD IT S+Q AI+ET RRREKQ+ +NK+H I+PQ ++
Sbjct: 553 STTSLIQTIGRAARNVSGEVIMYADKITDSMQEAIEETERRREKQIAYNKEHGIDPQPLR 612

Query: 727 EKIMEVIDPILLE------DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
           +KI +++D +  +      ++  + +       S++  + +A +  L  QM  AA  L F
Sbjct: 613 KKIADILDQVYEDGGDEESNSDPSAVVEKRDISSMATDEVQALIDDLSAQMGAAARELKF 672

Query: 781 EEAARIRDEIKRLKSSPYFQGLDDS 805
           E A R+RDEI  LK     +GL ++
Sbjct: 673 ELAGRLRDEIADLKKE--LRGLKEA 695


>gi|295839531|ref|ZP_06826464.1| excinuclease ABC subunit B [Streptomyces sp. SPB74]
 gi|197696890|gb|EDY43823.1| excinuclease ABC subunit B [Streptomyces sp. SPB74]
          Length = 718

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/710 (49%), Positives = 475/710 (66%), Gaps = 43/710 (6%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             +    + +  F++ + Y PSGDQP AIA+L K +   EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVTQIERTVAPFEVVSPYSPSGDQPTAIAELEKRVKGGEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IERLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V LK+GD V++ EL
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVSLKVGDEVDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG
Sbjct: 182 LRRFVDIQYARNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSLLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I + + + ++  SHY+     +  A+  I+ EL+ RL ELEK+G+LLEAQRL  R TY
Sbjct: 241 EVISDDQQVYVFPASHYIAGPERMERAVSGIEAELEQRLAELEKQGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EML   G+C  +ENYS +   R PG PP TL +Y PED LL +DESHVT+PQI  MY 
Sbjct: 301 DIEMLRQIGTCSGVENYSMHFDDREPGSPPNTLLDYFPEDFLLVIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL++EE+       + +SATPG++EL +  G  VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLKWEEFQKRIGQAVYLSATPGNYELSRSDG-FVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I 
Sbjct: 420 IRPTGLVDPEIVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMAEDLTDYFLELGIN 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD IT +++ AIDET RRR KQ+ +N +  I+PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADKITPAMERAIDETNRRRAKQIAYNTERGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI-----------------------------------------S 747
           I +++  I  E+  T ++                                          
Sbjct: 600 INDIVASIAREEVDTESLLGTGYRQAAEGKGAKTPVPALGGKATAEAGKAAKGAKSAKGK 659

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             +        +    ++ +  +M  AA +L FE AAR+RDE+  +K   
Sbjct: 660 AASTPTDRPGAELAQQIEEMTDRMRAAAADLQFEVAARLRDEVSEMKKEL 709


>gi|325105912|ref|YP_004275566.1| excinuclease ABC, B subunit [Pedobacter saltans DSM 12145]
 gi|324974760|gb|ADY53744.1| excinuclease ABC, B subunit [Pedobacter saltans DSM 12145]
          Length = 676

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/667 (52%), Positives = 475/667 (71%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AI QL++G++S +  Q LLGVTGSGKTFT+A VIE  Q+P ++++
Sbjct: 3   FNLSSQYKPTGDQPNAIKQLVEGVNSGDHYQTLLGVTGSGKTFTIANVIEQTQKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAV YFVSYYDYYQPEA++P T+TYIEK+  IN++I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPDNAVNYFVSYYDYYQPEAFLPTTNTYIEKDLQINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             T +L+  R D IVVSS+SCIYG+G+ E +S  + +  +G  + +   L  LV+  Y R
Sbjct: 123 RTTSALMSGRRDIIVVSSISCIYGMGNPEDFSNSVFRFGVGTRISRNAFLHRLVEILYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD+++I+P++L D A+RVS FG+DIEEI+   P+TG+ I   + I I
Sbjct: 183 TTAEFKRGTFRVKGDTVDIYPAYL-DFAYRVSFFGDDIEEIAAIDPITGKSIEKTQAITI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VTP+    + +  I E+++ R  + E EGR LEA+RLE+R  YD+EM+   G C
Sbjct: 242 FPANLFVTPKEKFISVLHEIGEDMEARKKQFESEGRFLEAKRLEERTNYDMEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PG  P  L +Y P+D L+ +DESHVT+PQI  MY GD  RK +L E
Sbjct: 302 SGIENYSRYFDGRRPGMRPFCLLDYFPDDYLMVIDESHVTVPQIRAMYGGDRSRKVSLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL F+E+  L P TI VSATPG +EL+Q +G+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAALDNRPLNFQEFENLAPQTIYVSATPGDYELQQTEGVFVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    QV+D+ DEI+   +QG RIL+T LTKRMAE+L +Y+   NI+VRY+HSE+KTL
Sbjct: 422 EVRPIINQVDDLLDEIDKTIKQGDRILVTTLTKRMAEELAKYMDRLNIKVRYIHSEIKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R LRLG+FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 482 ERVEILRGLRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD+IT S+++ IDET RRREKQ+++N++H I P++V +    +I+   + 
Sbjct: 542 RNDRGRVIMYADSITDSMRVTIDETNRRREKQIKYNEEHGIIPKTVGKSREAIIEQTSVV 601

Query: 740 -----------DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                      D +   I+ D     ++K + K  + + +K+M  A+ NL+F  AA++RD
Sbjct: 602 DFKGGIQQAYIDNSEPTIAADPVVQYMTKAQLKKSIDNTKKEMLAASKNLDFLLAAKLRD 661

Query: 789 EIKRLKS 795
           E+  L+ 
Sbjct: 662 EMYALEK 668


>gi|332707351|ref|ZP_08427401.1| excinuclease ABC subunit B [Lyngbya majuscula 3L]
 gi|332353842|gb|EGJ33332.1| excinuclease ABC subunit B [Lyngbya majuscula 3L]
          Length = 714

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/664 (53%), Positives = 461/664 (69%), Gaps = 4/664 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F ++  + P+GDQP AI+QL   + +  ++Q LLG TG+GKTF++A VIE + +P +++
Sbjct: 27  LFNLEAPFQPTGDQPQAISQLTTYLKAGNRIQTLLGATGTGKTFSVASVIEKVGKPTLLL 86

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQL +E + FFPHNAVEYF+SYYDYYQPEAY+P TDTYIEK +SIN++ID +R
Sbjct: 87  AHNKTLAAQLCNELRGFFPHNAVEYFISYYDYYQPEAYIPVTDTYIEKTASINDEIDMLR 146

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSATRSL ER D IVV+S+SCIYG+G    Y +  + L++   V+Q++LL  LV  QY R
Sbjct: 147 HSATRSLFERRDVIVVASISCIYGLGIPSEYLKASIPLRVNTEVDQRQLLRDLVSVQYSR 206

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG   ++VE + I
Sbjct: 207 NDLELGRGRFRVKGDVLEIGPAY-EDRIIRVEFFGDEIDAIHYVDPVTGGIFQSVEGVNI 265

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y   H+VTP   L  A   IK EL+ RL +LE+ G LLEAQRLEQR  YDLEML   G C
Sbjct: 266 YPARHFVTPDERLEEACNAIKAELEERLAQLEQAGNLLEAQRLEQRTRYDLEMLLEIGYC 325

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +ENYSR+L GR  GEPP  L +Y PED LL VDESHVT+PQI GMY GD  RK  L +
Sbjct: 326 NGVENYSRHLAGRKLGEPPECLIDYFPEDWLLVVDESHVTVPQIRGMYNGDRARKQVLID 385

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS  DNRPL+ EE+       I VSATPG WE+E+ QG +VEQIIRPTG++DP +
Sbjct: 386 HGFRLPSAADNRPLKAEEFWAKVNQCIFVSATPGDWEMEESQGRVVEQIIRPTGVLDPEI 445

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R    QV+D+  EI        R+L+T LTKRMAEDLTEYL ER+IR+ Y+HS++ ++
Sbjct: 446 FVRPTVAQVDDLLAEIKQRVDCQERVLVTTLTKRMAEDLTEYLQERDIRISYLHSDINSI 505

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEI++ LR G+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAA
Sbjct: 506 ERIEILQGLRQGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAA 565

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           R+V  + I+YADT+TKS++ AIDET RRR+ Q E+N K+NI PQ +++     I   L  
Sbjct: 566 RHVRGQAIMYADTLTKSMRKAIDETNRRRKIQSEYNIKNNIIPQPIRKTANNPILTFLDV 625

Query: 740 DA---ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                A    S+  Q   +  +K    +  L +QM  AA  L FE AA++RD IK+L+  
Sbjct: 626 SRRLNAQQFESVFEQVDDVPLEKIPELINQLEEQMKEAAKTLEFETAAKLRDRIKQLRDK 685

Query: 797 PYFQ 800
               
Sbjct: 686 LLVD 689


>gi|300787966|ref|YP_003768257.1| excinuclease ABC subunit B [Amycolatopsis mediterranei U32]
 gi|299797480|gb|ADJ47855.1| excinuclease ABC subunit B [Amycolatopsis mediterranei U32]
          Length = 726

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/717 (49%), Positives = 486/717 (67%), Gaps = 29/717 (4%)

Query: 113 DNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQL 172
           D        +        ++   +    F++ +DY P+GDQPAAI +L + I + EK  +
Sbjct: 8   DVAFATEHPVLAQSDFRPVSEIPRTGGRFEVVSDYQPAGDQPAAIDELERRIKAGEKDVV 67

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           LLG TG+GK+ T A +IE +QRP +VMAPNK LAAQL +E +  FP+NAVEYFVSYYDYY
Sbjct: 68  LLGATGTGKSATTAWLIERVQRPTLVMAPNKTLAAQLANELRELFPNNAVEYFVSYYDYY 127

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           QPEAY+ +TDTYIEK+SSIN+ ++R+RHSAT +LL R D IVV+SVSCIYG+G+ +SY  
Sbjct: 128 QPEAYIAQTDTYIEKDSSINDDVERLRHSATMNLLSRRDVIVVASVSCIYGLGTPQSYLD 187

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
              +LK G  +++   L +LV  QY R DI   RGTFR  GD++EI P++ E++A RV  
Sbjct: 188 RSSKLKAGMQLDRDVFLRALVDVQYTRNDIAFARGTFRARGDTVEIIPAY-EELAIRVEF 246

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG++IE++   +PLTG  ++ V+ ++I+  +HYV     +  A++ I++EL+ RL ELE+
Sbjct: 247 FGDEIEKLYYLHPLTGDIVKEVDEVRIFPATHYVAGPERMEKAIQGIEKELEERLAELER 306

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           +G+LLEAQRL  R  YD+EM+   G C  IENYSR++ GR PG  P TL +Y P+D LL 
Sbjct: 307 QGKLLEAQRLRMRTAYDIEMMRQVGFCSGIENYSRHIDGRGPGTAPATLIDYFPDDFLLV 366

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           +DESH T+PQI GMY GD  RK  L EYGFRLPS +DNRPL +EE++     T+ +SATP
Sbjct: 367 IDESHQTVPQIGGMYEGDMSRKRNLVEYGFRLPSAVDNRPLTWEEFSDRIGQTVYLSATP 426

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
           G +E+ Q  G  VEQ+IRPTGLVDP V ++    Q++D+  EI   A++  R+L+T LTK
Sbjct: 427 GPYEMGQAGGEFVEQVIRPTGLVDPKVVVKPTEGQIDDLVHEIRERAEKDERVLVTTLTK 486

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           +M+EDLT+YL E  IRVRY+HSEV TL R+E++R LR G FDVLVGINLLREGLD+PE  
Sbjct: 487 KMSEDLTDYLLELGIRVRYLHSEVDTLRRVELLRQLRAGDFDVLVGINLLREGLDLPEVS 546

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           LVAILDADKEGFLRS TSLIQTIGRAARNV+ +V +YAD IT S++ AIDET RRREKQ+
Sbjct: 547 LVAILDADKEGFLRSGTSLIQTIGRAARNVSGEVHMYADKITDSMRHAIDETDRRREKQV 606

Query: 713 EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS------------------------- 747
            +N++  ++PQ +++KI +++D +  E   T  +S                         
Sbjct: 607 AYNEERGVDPQPLRKKIADILDRVYSEAEDTEQVSVGGSGRNSSRGKKPEQGDRVRSSGM 666

Query: 748 -IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
            +D    ++ + +    ++ +  QM  AA +L FE AAR+RDEI  LK     +G+D
Sbjct: 667 LVDKNVSAMPRAQLADLIQQMTDQMMQAARDLQFELAARLRDEISDLKKE--LRGMD 721


>gi|289423233|ref|ZP_06425044.1| excinuclease ABC, B subunit [Peptostreptococcus anaerobius 653-L]
 gi|289156333|gb|EFD04987.1| excinuclease ABC, B subunit [Peptostreptococcus anaerobius 653-L]
          Length = 659

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/660 (51%), Positives = 467/660 (70%), Gaps = 2/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++Q+D+ P GDQP AI  + K I ++ K Q L+GVTGSGKTF MA +IE +++P +
Sbjct: 1   MPEFKIQSDFKPMGDQPKAIDTICKSIENKNKFQTLVGVTGSGKTFAMANIIERVKKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV  +DTYIEK++SIN++ID+
Sbjct: 61  ILAHNKTLAAQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT ++LER D I++SSVSCIYG+G  + Y ++++ L+ G   ++ +++  LV+ QY
Sbjct: 121 LRHSATAAILERQDTIIISSVSCIYGLGDPKDYKELMLSLRPGMMRDRDDVIRRLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+  IRGTFRV GD +EIFP+  +D A RV  FG++I+ I+E   +TG+ +     I
Sbjct: 181 ERNDVNFIRGTFRVRGDILEIFPASTDDKAIRVEFFGDEIDRITEIDYITGKVVAERGHI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYVT    + +A+  I+EEL+  + + +   +LLEAQR+EQR  YD+EML   G
Sbjct: 241 AIFPASHYVTTPERIESAIISIEEELEKAIADFKANDKLLEAQRIEQRTKYDIEMLREIG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR++TGR  GE P TL ++ P+D LL VDESHVT+PQ+ GMY GD  RK +L
Sbjct: 301 FCQGIENYSRHITGRKKGEKPYTLMDFFPDDFLLIVDESHVTLPQVRGMYGGDRSRKKSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E GFRL S  DNRPL FEE+       +  +ATPG +E+E    +  EQIIRPTGL+DP
Sbjct: 361 IENGFRLESAYDNRPLNFEEFESNLNQVLFTTATPGPYEMEHT-DVFAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R    Q++D+  EIN   + G R+L+T LTK+M+EDLT YL    I+V+Y+HS++ 
Sbjct: 420 LIDVRPVNNQIDDLLVEINKTIESGERVLITTLTKKMSEDLTNYLKGVGIKVKYLHSDIV 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRDLRLGKFDVLVGINLLREGLDIPE  L+AILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N +VI+YAD IT S++ AIDET RRR  Q+ +N++H I P+++ + I + I    
Sbjct: 540 AARNSNGRVIMYADKITDSMKRAIDETERRRSIQMAYNEEHGIVPKTISKNIRDNIAITR 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + + A +      + L   + +    +  L+ +M   A+ LNFE AA +RD++  L+   
Sbjct: 600 VAEEAESYDLSGIKGLK-DQDEIATTIIILKSKMMEEAEKLNFELAAELRDKVTELEKKL 658


>gi|33596640|ref|NP_884283.1| excinuclease ABC subunit B [Bordetella parapertussis 12822]
 gi|81836644|sp|Q7W8V6|UVRB_BORPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|33573341|emb|CAE37325.1| excinuclease ABC subunit B [Bordetella parapertussis]
          Length = 675

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/644 (55%), Positives = 466/644 (72%), Gaps = 1/644 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F +   Y P+GDQP AI  L +G+      Q LLGVTGSGKT+TMA +I  + RPA+V
Sbjct: 12  SPFHLYQPYPPAGDQPGAIDALTEGVSDGLMFQTLLGVTGSGKTYTMANMIARLGRPALV 71

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++M
Sbjct: 72  LAPNKTLAAQLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQM 131

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+SLLER D ++V +VSCIYGIG+   Y  M++ L+ GD + ++E+L+ LV  QY 
Sbjct: 132 RLSATKSLLERRDTVIVGTVSCIYGIGNPGDYHAMVLILRTGDRISRREVLARLVAMQYT 191

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RG FRV G++I+IFP+   ++A R+++F ++IE +  F PLTG+  + +    
Sbjct: 192 RNDADFTRGVFRVRGETIDIFPAESPELALRLTLFDDEIESLELFDPLTGRVRQKLPRFT 251

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYVTPR T+  A++ IKEEL+ RL +L  +G+L+EAQRLEQR  +DLEML+  G 
Sbjct: 252 VYPGSHYVTPRETVLRAIETIKEELRERLAQLIADGKLVEAQRLEQRTRFDLEMLQELGF 311

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHVTI Q+ GMYRGD  RK TL 
Sbjct: 312 CKGIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQLGGMYRGDRSRKETLV 371

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPLR EE+       + VSATP ++E E     +VEQ++RPTGLVDP 
Sbjct: 372 QYGFRLPSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHADN-VVEQVVRPTGLVDPI 430

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R A TQV+D+  EI+  A    R+L+T LTKRMAEDLT++L E  +RVRY+HS++ T
Sbjct: 431 VEVRPAHTQVDDLLGEIHKRAALQERVLVTTLTKRMAEDLTDFLSEHGVRVRYLHSDIDT 490

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGI+LLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 491 VERVEIIRDLRLGVFDVLVGISLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 550

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N + ILYAD IT S++ AIDET RRR KQ++HN  H I  + V + + E+ID ++ 
Sbjct: 551 ARNLNGRAILYADRITDSMRRAIDETERRRAKQIQHNTDHGITARGVSKAVRELIDGVVA 610

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                   S    ++   +K     ++ L K M   A NL FE+
Sbjct: 611 PAGHDALESAVPAEVLTDEKAMAREIRRLEKLMMDHARNLEFEQ 654


>gi|288919861|ref|ZP_06414185.1| excinuclease ABC, B subunit [Frankia sp. EUN1f]
 gi|288348776|gb|EFC83029.1| excinuclease ABC, B subunit [Frankia sp. EUN1f]
          Length = 716

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/711 (50%), Positives = 490/711 (68%), Gaps = 30/711 (4%)

Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180
           +I +        +  +    FQ+ +++ P+GDQPAAI +L + I + EK  +LLG TG+G
Sbjct: 7   EIVSTTFERPTTDLQRSAAPFQVVSEFAPAGDQPAAIDELARRIQAGEKDVVLLGATGTG 66

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           K+ T A ++E +QRPA+VMAPNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAY+ +
Sbjct: 67  KSATTAWLVERLQRPALVMAPNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYIAQ 126

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           TDTYIEK+SSINE+++R+RHSAT +LL R D IVV+SVSCIYG+G+ + Y   +V+L++G
Sbjct: 127 TDTYIEKDSSINEEVERLRHSATMNLLTRRDVIVVASVSCIYGLGTPQEYIDRMVRLRVG 186

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           D    + LL   V  QY R D+   RGTFRV GD++E+FP + E++A R+ MFG++IE +
Sbjct: 187 DEFGHERLLRRFVDVQYARNDVAFTRGTFRVRGDTVEVFPVY-EELAVRIEMFGDEIERL 245

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
           S  +PLTG+ +R  E I ++  +HYV     +  A+  I+ EL  RL ELE++ +LLEAQ
Sbjct: 246 SYLHPLTGEIVREAEEIFVFPATHYVAGPERMERAITGIEAELTGRLTELERQSKLLEAQ 305

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
           RL  R +YD+EM+   G C  IENYSR++ GR  G PP TL +Y PED LL +DESHVT+
Sbjct: 306 RLRMRTSYDIEMMRQVGFCSGIENYSRHIDGRAAGTPPHTLLDYFPEDFLLVIDESHVTV 365

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           PQI GMY GD  RK  L ++GFRLPS +DNRPLR+EE+      T+ +SATPG +EL + 
Sbjct: 366 PQIGGMYEGDMSRKRNLVDHGFRLPSAVDNRPLRWEEFLERIGQTVYLSATPGPYELGRG 425

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
            G +VEQIIRPTGL+DP + ++  + Q++D+  EI L A++  RIL+T LTK+MAEDLT+
Sbjct: 426 DG-VVEQIIRPTGLLDPEIILKPTKGQIDDLVHEIRLRAERDERILVTTLTKKMAEDLTD 484

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           YL E  IRVRY+HSEV TL R+E++ DLR G+FDVLVGINLLREGLD+PE  LVAILDAD
Sbjct: 485 YLLELGIRVRYLHSEVDTLRRVELLTDLRRGEFDVLVGINLLREGLDLPEVSLVAILDAD 544

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
           KEGFLRS  SLIQTIGRAARNV+ +V +YAD IT S+  AI+ET RRREKQ+ +N +  +
Sbjct: 545 KEGFLRSDKSLIQTIGRAARNVSGQVHMYADKITPSMSHAIEETNRRREKQIAYNTERGL 604

Query: 721 NPQSVKEKIMEVIDPILLE--------------------------DAATTNISIDAQQLS 754
           +PQ +++K+++++D ++ E                           A  T     A+   
Sbjct: 605 DPQPLRKKVVDILDDMVRETAGGEMIGGGGRAQSRGKAPAPGMKSKAGDTVGRYAAELAG 664

Query: 755 LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           + +++    ++ L  QMH AA  L FE AAR+RDEI  LK     +G+D +
Sbjct: 665 MPREELAQLIRQLDDQMHEAAKELQFELAARLRDEISELKKE--LRGMDAA 713


>gi|298491889|ref|YP_003722066.1| excinuclease ABC subunit B ['Nostoc azollae' 0708]
 gi|298233807|gb|ADI64943.1| excinuclease ABC, B subunit ['Nostoc azollae' 0708]
          Length = 665

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/666 (51%), Positives = 456/666 (68%), Gaps = 4/666 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F +Q  + P+GDQP AIAQL+  I +  + Q LLG TG+GKTF++A VIE +++P +
Sbjct: 1   MTEFSLQAPFSPTGDQPQAIAQLITSIEAGNRYQTLLGATGTGKTFSIAAVIEKVRKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK ++IN++ID 
Sbjct: 61  VLAHNKTLAAQLCNEMREFFPNNAVEYFVSYYDYYQPEAYIPVTDTYIEKTAAINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  + L+IG  V+Q+++L  L   QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGMPAEYLKAAIPLQIGMEVDQRQILRDLTSVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ + +++ +
Sbjct: 181 SRNDVEMGRGKFRVRGDLLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEILSSLQAV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H++TP   L  A + I  ELK + + LE+ G+L+EAQR++QR  YDLEML    
Sbjct: 240 NVYPARHFITPEQRLEVACEDISAELKQQKLALEELGKLVEAQRIDQRTRYDLEMLREVR 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  GEPP  L +Y P+D LL +DESHVT+PQI GMY GD  RK  L
Sbjct: 300 YCNGVENYSRHLAGRQAGEPPECLLDYFPKDWLLVIDESHVTVPQIRGMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+       I VSATPG+WE+E  +  I+EQ+IRPTG+VDP
Sbjct: 360 IDHGFRLPSAADNRPLKAEEFWQKANQCIFVSATPGNWEVEVSEDNIIEQVIRPTGVVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +R    QV+++  EI    +   R L+T LTKRMAEDLTEYL  + ++VRY+HSE+ 
Sbjct: 420 EVLVRPTEGQVDNLLGEIKDRVELKERTLITTLTKRMAEDLTEYLEHKGVQVRYLHSEIN 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           +++RIEI++DLR GKFDVLVG+NLLREGLD+PE  LVAI+DADKEGFLR++ SLIQTIGR
Sbjct: 480 SIQRIEILQDLRNGKFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR++  KVI+YAD +T S+  AIDET RRR  Q  +NK + I P+ V +K    I   L
Sbjct: 540 AARHIQGKVIMYADKLTDSMIKAIDETDRRRGIQTAYNKMYGITPKPVVKKSSNAILSFL 599

Query: 738 LEDAATTNISIDAQQLSLSK---KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                     +      L +   +     +  L KQM  AA  + FEEAA++RD IK L+
Sbjct: 600 DVSRRLNTRDLKVVDKHLDELWLEDIPELITLLEKQMKEAAKKMEFEEAAKLRDRIKHLR 659

Query: 795 SSPYFQ 800
                +
Sbjct: 660 GKMLGK 665


>gi|254431082|ref|ZP_05044785.1| excinuclease ABC, B subunit [Cyanobium sp. PCC 7001]
 gi|197625535|gb|EDY38094.1| excinuclease ABC, B subunit [Cyanobium sp. PCC 7001]
          Length = 671

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/668 (53%), Positives = 458/668 (68%), Gaps = 6/668 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  FQ+   Y P GDQP AIA L+ G+   E+ Q LLG TG+GKTFT+A VI    RP +
Sbjct: 4   MVPFQLHAPYAPKGDQPTAIAGLVGGVEGGERYQTLLGATGTGKTFTIANVIARTGRPTL 63

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID 
Sbjct: 64  VLAHNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDM 123

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V  ++GD++  +  L  LV  QY
Sbjct: 124 LRHSATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVTFQVGDTLNLRGSLRELVNNQY 183

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ I RG FRV GD +EI P++ ED   R+ +FG+++E I    P TG+ ++++ETI
Sbjct: 184 SRNDLEISRGRFRVRGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSLETI 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP+  L  A++ I+ EL+ RL  L  +GRLLEAQRLEQR TYDLEMLE  G
Sbjct: 243 NIYPAKHFVTPKERLQEAIQAIRAELRERLDVLNGQGRLLEAQRLEQRTTYDLEMLEQVG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L
Sbjct: 303 YCNGVENYARHLAGREAGTPPECLIDYFPDDWLLVVDESHVTCSQLQAMYNGDQSRKQVL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+ EE+      TI VSATPG+WELEQ  G +VEQ+IRPTG++DP
Sbjct: 363 IEHGFRLPSAADNRPLKGEEFWQKARQTIFVSATPGNWELEQSHGQVVEQVIRPTGVLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    QV+D+  EI + A +  R+L+T LTKRMAEDLT+YL E  +RVRY+HSE+ 
Sbjct: 423 VVEVRPTEGQVDDLLGEIRVRADRQERVLVTTLTKRMAEDLTDYLAENGVRVRYLHSEIH 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLR G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 483 SIERIEIIQDLRNGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V    +LYAD +T S+  AI+ET RRR  Q  +N+KH I P +  ++    I   L
Sbjct: 543 AARHVEGVALLYADNLTDSMAKAIEETERRRGIQQAYNEKHGITPTAAGKRAGNAILAFL 602

Query: 738 -----LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                L D      +  A+   +        ++ L ++M  AA NL FEEAA +RD IK 
Sbjct: 603 EVSRRLNDEQLEQATEQAEHNGVPLDSLPELIQQLEEKMKTAAKNLEFEEAANLRDRIKG 662

Query: 793 LKSSPYFQ 800
           L+     +
Sbjct: 663 LRQKLVGR 670


>gi|308273879|emb|CBX30479.1| UvrABC system protein B [uncultured Desulfobacterium sp.]
          Length = 658

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/656 (52%), Positives = 468/656 (71%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           +DY P GDQP AI  L+ G+ S +K Q+LLGVTGSGKTFTMA VIE   +PA+V+APNK 
Sbjct: 2   SDYTPKGDQPNAIESLVSGVLSEKKHQVLLGVTGSGKTFTMANVIEKTGKPALVIAPNKT 61

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
           LAAQLYSEFK  FP NAVEYFVSYYDYYQPEAY+P +DTYI+K+SSIN+ ID++RHSATR
Sbjct: 62  LAAQLYSEFKLLFPENAVEYFVSYYDYYQPEAYIPSSDTYIQKDSSINDMIDKLRHSATR 121

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           S+L R D I+++SVSCI+G+G+ E Y  M V ++    +++ + L +LV+ QY+R D   
Sbjct: 122 SVLSRRDVIIIASVSCIFGLGAPEDYLSMRVHVEKNMELDRDKFLKNLVEMQYERNDYDF 181

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            RG+FRV GD +EIFP++ ED A R++ FG+++E+I+E  PL G  + ++ +  I+  SH
Sbjct: 182 FRGSFRVRGDRVEIFPAYEEDKAIRINFFGDEVEDIAEIDPLKGSILNSLNSATIFPASH 241

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
           YVT + TL  A+  I  ELK R+     E + +E QR+E+R  +D+EM++  G C  IEN
Sbjct: 242 YVTQKMTLKRAVDSILIELKERIEFFRNEKKYIETQRIEERTHFDVEMMQEIGYCNGIEN 301

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
           YSR+LTGR+PGE PPTL +Y P+D LLF+DESH+T+PQ+ GMY+GD  RK TL  +GFRL
Sbjct: 302 YSRHLTGRSPGEAPPTLLDYFPKDYLLFIDESHITVPQLHGMYKGDRSRKETLVNFGFRL 361

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           PS +DNRPLRF+E+       I  SATP  +ELE+ +G + E I+RPTGL+DP + ++SA
Sbjct: 362 PSALDNRPLRFDEFETRTSQVIYASATPADFELEKAKGSVAELIVRPTGLLDPAIHLKSA 421

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           + QV+D+++EI    Q+  R+L+T LTKRMAEDLTEY  + +I+V Y+HS++ T ER++I
Sbjct: 422 KNQVDDLFEEILARIQKNERVLVTTLTKRMAEDLTEYYSDLDIKVSYLHSDIGTFERMQI 481

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I DLR G FDV++GINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT GRAARN+N 
Sbjct: 482 INDLRKGVFDVIIGINLLREGLDIPEVSLVAILDADKEGFLRSARSLIQTCGRAARNLNG 541

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
            +I+Y+D +T S++ AIDET RRR+ Q   NKKH I P S+++ I  + +     D    
Sbjct: 542 SIIMYSDVLTNSMKQAIDETNRRRKIQKAFNKKHGITPVSIEKAITPLFEYASASDKFAA 601

Query: 745 NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
           +   +      S       + +L K+M  AA  L+FE+AA +RD I  +K    F+
Sbjct: 602 DKVSEVISKYESTNNIDEIISNLEKEMKKAAQELDFEKAAELRDNISAIKKKMVFE 657


>gi|226950837|ref|YP_002805928.1| excinuclease ABC, B subunit [Clostridium botulinum A2 str. Kyoto]
 gi|254764903|sp|C1FMK5|UVRB_CLOBJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226842613|gb|ACO85279.1| excinuclease ABC, B subunit [Clostridium botulinum A2 str. Kyoto]
          Length = 662

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/658 (52%), Positives = 466/658 (70%), Gaps = 2/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + ++P+GDQP AI  + KGI  REK Q L+GVTGSGKTFTMA +IE +Q+P +
Sbjct: 1   MNQFKVISKFNPTGDQPKAIKSIAKGIEKREKFQTLIGVTGSGKTFTMANIIEKVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF+ FFP+NAVEYFVSYYDYYQPEAYV ++DTYIEK++SIN++ID+
Sbjct: 61  VLAHNKTLAAQLCSEFREFFPNNAVEYFVSYYDYYQPEAYVAQSDTYIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G+ E Y ++ + L+ G   ++ E++  LV+ QY
Sbjct: 121 LRHSATSALFERKDVIIVASVSCIYGLGNPEEYKKLTISLREGMEKDRDEIIKKLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD ++IFP+     A RV  FG++I+ I EF  LTG+ I  ++ I
Sbjct: 181 ERNDIDFSRGTFRVKGDVLDIFPASSSSKAVRVEFFGDEIDRIKEFDVLTGETITKLKHI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+ T +  L  A+K I+EEL+ R+ EL  + ++LEAQRL+QR  +D+EM+   G
Sbjct: 241 SIFPASHFATSKDRLEVAIKDIEEELEERVKELVSQDKILEAQRLKQRTNFDIEMMREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L GR  G PP TL +Y P+D LLF+DESHVT+PQ+  M  GD  RK +L
Sbjct: 301 YCTGIENYSRVLDGRAKGTPPQTLLDYFPQDFLLFIDESHVTLPQVKAMQAGDKSRKDSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP   DNRPL F+E+       + VSATP  +ELE       EQ+IRPTGL+DP
Sbjct: 361 VEYGFRLPCAYDNRPLTFKEFENKLNQVVFVSATPAKYELEYSTN-TAEQVIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++  + Q++D+Y  I    ++G RIL+T LTK+MAEDLT+YL E  ++ RY+HS++ 
Sbjct: 420 EIIVKPVKGQIDDLYTSIQETIKRGFRILVTTLTKKMAEDLTDYLKEMGVKTRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++II DLR G+F VLVGINLLREGLDIPE  LV ILDADKEGFLRS+TSLIQT+GR
Sbjct: 480 TIERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+Y D ITKS++  I ET RRR+ Q+E+N+++ I P+++ + I EVI    
Sbjct: 540 AARNSESKVIMYGDVITKSMEKTIKETNRRRKIQMEYNEEYGIVPKTIIKDIREVIQISD 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + +      +++    S +       ++   ++M  AA NL FE+AA +RD I +LK 
Sbjct: 600 IAEERKEYDNLNEALKSYN-NDIDKLIEKYEEEMKEAAQNLQFEKAAHLRDVIYKLKK 656


>gi|254467884|ref|ZP_05081290.1| excinuclease ABC, B subunit [beta proteobacterium KB13]
 gi|207086694|gb|EDZ63977.1| excinuclease ABC, B subunit [beta proteobacterium KB13]
          Length = 682

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/669 (55%), Positives = 485/669 (72%), Gaps = 4/669 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + +++   + PSGDQP AI QL+ GI+  EK Q LLGVTGSGKTFT+A VI    RPAIV
Sbjct: 12  SPYELALPFEPSGDQPKAIEQLIDGINRNEKFQTLLGVTGSGKTFTIANVIAQTGRPAIV 71

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLYSEFK FFP+N+VEYFVSYYDYYQPEAYVP  D +IEK+SSIN+ I++M
Sbjct: 72  MAPNKTLAAQLYSEFKEFFPNNSVEYFVSYYDYYQPEAYVPARDLFIEKDSSINDHIEQM 131

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER+D I+++SVS IYGIG    Y  M++ ++ G+ + Q+ ++  LV  QY 
Sbjct: 132 RLSATKALLERDDSIIIASVSAIYGIGDPVDYQGMVLHIQSGEKILQRNIVQRLVSMQYD 191

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD I+IFP+   + A R+SMF +++E ++ F PLTGQ    ++   
Sbjct: 192 RNDFDFARGTFRVRGDVIDIFPAENSETALRISMFDDEVESLTLFDPLTGQLFNKIKRFT 251

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +SHYVTPR T+  A++ IK EL  R+    KE RL+EAQR+EQR  +D+EML   G 
Sbjct: 252 VYPSSHYVTPRQTVVNAIEKIKVELHDRVNFYLKEKRLVEAQRIEQRTKFDIEMLNEIGF 311

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+GR PGE PPTL +Y+P+++L+F DESHVTIPQ+ GMY+GD  RK  L 
Sbjct: 312 CKGIENYSRHLSGRGPGEAPPTLIDYLPDNTLMFFDESHVTIPQVGGMYKGDRARKENLV 371

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS MDNRPL+FEE+  L    + VSATP  +E +  + IIVEQ+ RPTGLVDP 
Sbjct: 372 DFGFRLPSAMDNRPLKFEEFENLMKQCVFVSATPADYEDKHSK-IIVEQVARPTGLVDPA 430

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+  A +QV+ +  EI    +Q  R+L+T LTKRMAEDLT+YL E  I+V+Y+HS++ T
Sbjct: 431 IEVYPADSQVDHLLGEIKKTIEQENRVLVTTLTKRMAEDLTDYLIENGIKVKYLHSDIDT 490

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRL +FDVLVGINLLREGLDIPE GLVA+LDADKEGFLRS+ SLIQT GRA
Sbjct: 491 VERVEIIRDLRLKEFDVLVGINLLREGLDIPEVGLVAVLDADKEGFLRSERSLIQTAGRA 550

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN++ +VI YA+T TKS++ AI E TRRRE+Q+ +N ++NI P  V++KI ++I+  + 
Sbjct: 551 ARNLDGRVIFYANTETKSMKSAIKEMTRRRERQIAYNTENNITPAGVRKKIKDIIEKEID 610

Query: 739 EDA---ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            ++   + +      +   L++ K    +  L K M   + NL FE+AA IRDEIK LK 
Sbjct: 611 TESFKISQSERKKYRKYEDLTEPKLIKEISKLEKSMQKFSKNLEFEKAAEIRDEIKFLKI 670

Query: 796 SPYFQGLDD 804
             Y   L D
Sbjct: 671 KVYGPNLKD 679


>gi|307244693|ref|ZP_07526796.1| excinuclease ABC, B subunit [Peptostreptococcus stomatis DSM 17678]
 gi|306491944|gb|EFM63994.1| excinuclease ABC, B subunit [Peptostreptococcus stomatis DSM 17678]
          Length = 657

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/657 (52%), Positives = 471/657 (71%), Gaps = 2/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI ++ + I    K Q L+GVTGSGKTF MA +I+ +++P +V+A
Sbjct: 3   FKLVSDYVPTGDQPEAIDRISQSIEEGNKYQTLVGVTGSGKTFAMANIIQRVKKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYV  +DTYIEK++SIN++ID++RH
Sbjct: 63  HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVAHSDTYIEKDASINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT ++LER+D I++SSVSCIYG+G  + Y ++++ L+ G   ++ +++  LV+ QY+R 
Sbjct: 123 SATAAILERDDTIIISSVSCIYGLGDPKDYKELMLSLRPGMVRDRDDIIKRLVEIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  IRGTFRV GD +EIFP+  ++ A R+  FG++I+ I+E   +TG+ +     + I+
Sbjct: 183 DVNFIRGTFRVRGDILEIFPASNDEKAIRIEFFGDEIDRITEIDYVTGKVVGQRNHVVIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT    +  A+  I+EEL   + + +   +LLEAQR+EQR  YD+EML   G CQ
Sbjct: 243 PASHYVTTPERIERAIGTIEEELDQAIADFKSRDKLLEAQRIEQRTKYDIEMLREIGFCQ 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++TGR+ GE P TL ++ P+D L+ VDESHVTIPQ+ GMY GD  RK +L E 
Sbjct: 303 GIENYSRHITGRSKGEKPYTLMDFFPDDYLIIVDESHVTIPQVRGMYAGDRSRKKSLIEN 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRL S  DNRPL FEE+       +  +ATPG +E+E  + +  EQIIRPTGL+DP V 
Sbjct: 363 GFRLESAYDNRPLNFEEFESNIHQVLFTTATPGPYEMEHTE-VFAEQIIRPTGLLDPTVS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN    +G R+L+T LTK+M+EDLT+YL E  I+V+YMHS++ TLE
Sbjct: 422 VRPVENQIDDLIVEINRNVDKGERVLITTLTKKMSEDLTKYLLESGIKVKYMHSDIVTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLGKFDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TS+IQTIGRAAR
Sbjct: 482 RTEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSMIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +T S+Q AI ET RRR  Q+ +N+K+ I P+++++ + + I+   + +
Sbjct: 542 NSNGRVIMYADRVTDSMQRAISETERRRAIQMAYNEKYGIVPKTIQKGVRDSIEATRIAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
              +    D + L   + +    +  ++ +M  AA+NL FE+AA +RD+I  L+   
Sbjct: 602 EVESYDVNDIRALK-DEAQISQAIIVMKSEMMAAAENLEFEKAAELRDKIMILEKKL 657


>gi|257438383|ref|ZP_05614138.1| excinuclease ABC subunit B [Faecalibacterium prausnitzii A2-165]
 gi|257199214|gb|EEU97498.1| excinuclease ABC subunit B [Faecalibacterium prausnitzii A2-165]
          Length = 685

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/657 (52%), Positives = 458/657 (69%), Gaps = 7/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI QL++G+   ++ Q LLGVTGSGKTFTMA VI    RP +V+A
Sbjct: 6   FHLVSNYAPTGDQPQAIEQLVEGVERGDRCQTLLGVTGSGKTFTMANVIARCNRPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +EF++FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++IDR+RH
Sbjct: 66  HNKTLAAQLCTEFRSFFPDNAVEYFVSYYDYYQPEAYIPSTDTYIEKDSAINDEIDRLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +G    Y  M++ L+ G  +E+ +L   LV  QY+R 
Sbjct: 126 SATAALSERRDVIIVASVSCIYSLGDPIDYRSMVISLRPGMQMERDDLCKKLVTLQYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  IR  FRV GD+++I+ +++ D+A RV  FG++I+ I+EF P+TG +   V+ + I+
Sbjct: 186 DINFIRNKFRVHGDTVDIYLAYMSDLAIRVEFFGDEIDRITEFNPVTGTRQNVVKHVAIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+        A++ I+ E   ++ +   EG+L+EAQR++QR  YD+EML   G C+
Sbjct: 246 PASHYIVSADKKAAAIEKIRAECDEQVKKFTAEGKLIEAQRIQQRTNYDIEMLTEVGICK 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  L+GR PG  P TL +Y PED LLFVDESHVT+PQ+  MY GD+ RK TL EY
Sbjct: 306 GIENYSAVLSGRAPGSMPTTLLDYFPEDFLLFVDESHVTLPQVRAMYGGDYARKKTLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE        + VSATPG +E       I +Q+IRPTGL+DP + 
Sbjct: 366 GFRLPSAFDNRPLKFEEVESKLNQMVFVSATPGEYERRNS-TRIAQQVIRPTGLLDPLIS 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV D+  EIN    +  R+L+T LTK+MAEDLT++L E+ I+V+YMH EV T E
Sbjct: 425 VRPVEGQVTDLLGEINARTAKNERVLVTTLTKKMAEDLTDFLTEQGIKVKYMHHEVDTFE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII+DLRLG  DV+VGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 485 RMEIIKDLRLGSIDVVVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD +T S++ AI ET RRR  Q+ +N++H I P+++ + I + I+     +
Sbjct: 545 NAEGLVIMYADEVTDSMERAITETERRRAIQMAYNEEHGIVPKTIVKAIADSIEISDKAE 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            A  N         + K + +A ++ L ++M  AA  L FE AA +RD+I RL+   
Sbjct: 605 NAKRNT------RRMGKLEREAAIERLTREMKEAAKLLEFEHAAFLRDQIDRLRRGE 655


>gi|238927286|ref|ZP_04659046.1| excision endonuclease subunit B [Selenomonas flueggei ATCC 43531]
 gi|238884873|gb|EEQ48511.1| excision endonuclease subunit B [Selenomonas flueggei ATCC 43531]
          Length = 680

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/672 (52%), Positives = 460/672 (68%), Gaps = 3/672 (0%)

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
                   +    F++   + P GDQP AIA L  GI +    Q+LLG TG+GKT+TMAK
Sbjct: 5   PKLNTTQFEGEIPFKVVAPFEPMGDQPQAIADLAGGIENGMTAQVLLGATGTGKTYTMAK 64

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           VIE +QRP +V+A NK LAAQL SEFK+FFP N V YFVSYYD+YQPEAY+ +TDTYIEK
Sbjct: 65  VIERVQRPTLVIAHNKTLAAQLASEFKSFFPDNYVGYFVSYYDFYQPEAYIAQTDTYIEK 124

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           ++SIN++ID +RHSAT SL ER D I+V+SVSCIYG+GS ESY +M++ +  G ++ ++E
Sbjct: 125 DASINDEIDELRHSATCSLFERRDVIIVASVSCIYGLGSPESYHEMVLSVHKGQTITREE 184

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           +L  L+  +Y+R DI   RG FRV GD IEIFP+   +   R+ MFG+++E I EF   T
Sbjct: 185 ILQKLISIRYERNDIAFERGRFRVRGDVIEIFPAGYNNRGVRIEMFGDEVERIIEFDVTT 244

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           G+         ++  SHYVT    +  AM  I+ EL+ RL  L+ EG+LLEAQRLEQR  
Sbjct: 245 GEVYGERLHSMVFPASHYVTDDEDMKIAMADIRTELEERLAVLKGEGKLLEAQRLEQRTN 304

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           YDLEM++  G C  IENYSR+LT R PG  P TL +Y PED L+ +DESHVT+PQI  MY
Sbjct: 305 YDLEMMQEMGYCSGIENYSRHLTHRAPGATPYTLLDYFPEDFLIMIDESHVTLPQIHAMY 364

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
            GD  RK +L + GFRLPS  DNRPL FEE+       + VSATPG +E++Q    + +Q
Sbjct: 365 GGDRSRKVSLVDNGFRLPSAFDNRPLTFEEFAARINQIVYVSATPGKYEMQQ-AQQVAQQ 423

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           IIRPTGL+DP VE+R    Q++D+  EI L   +  R+L+T LTKRMAE+LTEYL E  +
Sbjct: 424 IIRPTGLLDPEVEVRPLAGQIDDLMGEIRLRIGRNERVLVTTLTKRMAENLTEYLREAGV 483

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +VRY+HS++ T+ER EII DLR G+FDVLVGINLLREGLD+PE  L+AILDADKEGFLRS
Sbjct: 484 KVRYLHSDIATIERAEIIHDLRAGEFDVLVGINLLREGLDMPEVSLIAILDADKEGFLRS 543

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
            T+LIQTIGRAARN    VI+Y D IT S+Q AIDET RRR  Q E+N++H I P+++ +
Sbjct: 544 DTALIQTIGRAARNAGGHVIMYGDVITGSMQRAIDETERRRAIQQEYNEEHGIVPKTIVK 603

Query: 728 KIMEVIDP--ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
            I+ +I+   +  ED +         +  L KK+ +  +KSL ++M  A+  L FE AA 
Sbjct: 604 PIVPLIEMTLVAAEDKSPYGKKDGKAKKKLGKKERENLVKSLLREMRQASRALEFERAAE 663

Query: 786 IRDEIKRLKSSP 797
           +RD I  L+   
Sbjct: 664 LRDMIVELEGEL 675


>gi|304437272|ref|ZP_07397232.1| excision endonuclease subunit UvrB [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369764|gb|EFM23429.1| excision endonuclease subunit UvrB [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 691

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/672 (52%), Positives = 461/672 (68%), Gaps = 3/672 (0%)

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
                   +    F++   + P GDQP AIA L  GI +    Q+LLG TG+GKT+TMAK
Sbjct: 16  PKLNTTIFEKEVPFKVVAPFEPMGDQPQAIADLAGGIENGMTAQVLLGATGTGKTYTMAK 75

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           VIE++QRP +V+A NK LAAQL SEFK+FFP N V YFVSYYD+YQPEAY+ +TDTYIEK
Sbjct: 76  VIESVQRPTLVIAHNKTLAAQLASEFKSFFPDNYVGYFVSYYDFYQPEAYIAQTDTYIEK 135

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           ++SIN++ID +RHSAT SL ER D I+V+SVSCIYG+GS ESY +M++ +  G ++ ++E
Sbjct: 136 DASINDEIDELRHSATCSLFERRDVIIVASVSCIYGLGSPESYHEMVLSVHKGQTITREE 195

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           +L  L+  +Y+R DI   RG FRV GD IEIFP+   +   R+ MFG+++E I EF   T
Sbjct: 196 ILQKLISIRYERNDIAFERGRFRVRGDVIEIFPAGYNNRGVRIEMFGDEVERIIEFDVTT 255

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           G+         ++  SHYVT    +  AM  I+ EL+ RL  L+ EG+LLEAQRLEQR  
Sbjct: 256 GEVYGERLHSMVFPASHYVTDDEDMKIAMADIRTELEERLAVLKGEGKLLEAQRLEQRTN 315

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           YDLEM++  G C  IENYSR+LT R PG  P TL +Y PED L+ +DESHVT+PQI  MY
Sbjct: 316 YDLEMMQEMGYCSGIENYSRHLTHRAPGATPYTLLDYFPEDFLIMIDESHVTLPQIHAMY 375

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
            GD  RK +L + GFRLPS  DNRPL FEE+       + VSATPG +E++Q    + +Q
Sbjct: 376 GGDRSRKVSLVDNGFRLPSAFDNRPLTFEEFAARINQIVYVSATPGKYEMQQ-AQQVAQQ 434

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           IIRPTGL+DP VE+R    Q++D+  EI L   +  R+L+T LTKRMAE+LTEYL E  +
Sbjct: 435 IIRPTGLLDPEVEVRPLAGQIDDLMGEIRLRIGRNERVLVTTLTKRMAENLTEYLREAGV 494

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +VRY+HS++ T+ER EII DLR G+FDVLVGINLLREGLD+PE  L+AILDADKEGFLRS
Sbjct: 495 KVRYLHSDIATIERAEIIHDLRAGEFDVLVGINLLREGLDMPEVSLIAILDADKEGFLRS 554

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
            T+LIQTIGRAARN    VI+Y D IT S+Q AIDET RRR  Q E+N++H I P+++ +
Sbjct: 555 DTALIQTIGRAARNAGGHVIMYGDVITGSMQRAIDETERRRTIQQEYNEEHGIVPKTIVK 614

Query: 728 KIMEVIDP--ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
            I+ +I+   +  ED +         +  L KK+ +  +KSL ++M  A+  L FE AA 
Sbjct: 615 PIVPLIEMTLVAAEDKSPYGKKDGKAKKKLGKKERENLVKSLLREMQQASRALEFERAAE 674

Query: 786 IRDEIKRLKSSP 797
           +RD I  L+   
Sbjct: 675 LRDMIVELEGEL 686


>gi|256820270|ref|YP_003141549.1| excinuclease ABC subunit B [Capnocytophaga ochracea DSM 7271]
 gi|256581853|gb|ACU92988.1| excinuclease ABC, B subunit [Capnocytophaga ochracea DSM 7271]
          Length = 665

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/661 (52%), Positives = 469/661 (70%), Gaps = 7/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ P+GDQP AI QL+KGI   +K Q+LLGVTGSGKTFT+A V+E +QRP +V+A
Sbjct: 3   FNIVSDFAPTGDQPQAIDQLVKGIERNDKYQVLLGVTGSGKTFTIANVVERIQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P T TYIEK+ SIN++I+++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYIPSTGTYIEKDLSINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T +LL  R D +VV+SVSC+YGIG+   + + ++ LK GD + + +L+  LV+  Y R
Sbjct: 123 STTSALLSGRRDVLVVASVSCLYGIGNPVEFQKNVITLKQGDVLPRTKLMHRLVQSLYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                  G FR+ GD +++FP + +D A+R+  FG++IEEI +F P T   + + +++ I
Sbjct: 183 TTAEFRHGNFRIKGDVLDVFPGY-DDNAFRIHFFGDEIEEIEQFDPTTNHVLDHYQSLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+++L  ++   E  G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDILQKAIWNIQQDLVKQVEFFEALGKPLEAKRLKERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ +DESHVT+ Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLIDYFPDDFLMVIDESHVTVSQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL+Q QG+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQQTQGVYVEQVIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  RIL+T LTKRMAE+LT+YL    IR RY+HS+V TL
Sbjct: 422 EVRPSANQIDDLVEEIQLRTEKDERILVTTLTKRMAEELTKYLTRIGIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K I+YAD IT S+Q  ID+T  RREKQ+ +NK HNI PQ + +KI   +    + 
Sbjct: 542 RNVNGKAIMYADKITDSMQRTIDDTNYRREKQMNYNKAHNITPQPLHKKIENSLSKSPIT 601

Query: 740 D-----AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +     +     + +AQ + LS K+ +  +K  RK M +AA  L+F +AA+ RDE+K+L+
Sbjct: 602 EFHYDPSFKERTAAEAQSVYLSAKELEKKIKETRKLMEVAAKELDFVKAAQYRDELKKLQ 661

Query: 795 S 795
            
Sbjct: 662 E 662


>gi|311107148|ref|YP_003980001.1| excinuclease ABC subunit B [Achromobacter xylosoxidans A8]
 gi|310761837|gb|ADP17286.1| excinuclease ABC, B subunit [Achromobacter xylosoxidans A8]
          Length = 728

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/657 (54%), Positives = 460/657 (70%), Gaps = 1/657 (0%)

Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185
             +          + F +   Y P+GDQP AI  L +G+      Q LLGVTGSGKT+TM
Sbjct: 52  PSAPGPGFIDFPGSPFHLYQPYPPAGDQPTAIEGLTQGVEDGLMFQTLLGVTGSGKTYTM 111

Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           A VI  M RPA+V+APNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +I
Sbjct: 112 ANVIARMGRPALVLAPNKTLAAQLYAEMREFFPKNAVEYFVSYYDYYQPEAYVPTRDLFI 171

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
           EK+SSINE I++MR SAT+SLLER D I+V +VSCIYGIG+   Y  M++ L+ GD + +
Sbjct: 172 EKDSSINEHIEQMRLSATKSLLERRDTIIVGTVSCIYGIGNPGDYHAMVLILRAGDQIAR 231

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
           +E+L+ LV  QY R D    RG FRV G++I+IFP+   ++A R+++F ++IE +  F P
Sbjct: 232 REILARLVAMQYTRNDAEFTRGVFRVRGETIDIFPAESPELALRLTLFDDEIESLELFDP 291

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           LTG+  + +    +Y  SHYVTPR T+  A++ IKEEL+ R+     +G L+EAQRLEQR
Sbjct: 292 LTGRIRQKLPRFTVYPGSHYVTPRDTVLRAIETIKEELRERVKRFVDDGHLVEAQRLEQR 351

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
             +DLEML+  G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHVTI Q+ G
Sbjct: 352 TRFDLEMLQELGFCKGIENYSRHLSGAAPGEPPPTLIDYLPSDALMFIDESHVTIGQLGG 411

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MYRGD  RK TL +YGFRLPS +DNRPL+ EE+       + VSATP ++E E     +V
Sbjct: 412 MYRGDRARKETLVQYGFRLPSALDNRPLKLEEFEARMRQCVFVSATPAAYEKEHTDN-VV 470

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           EQ++RPTGLVDP VE+  ARTQV+D+  +I     Q  R+L+T LTKRMAEDLT++L E 
Sbjct: 471 EQVVRPTGLVDPLVEVLPARTQVDDLLGQIKARVSQAERVLVTTLTKRMAEDLTDFLSEH 530

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RVRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFL
Sbjct: 531 GVRVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFL 590

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS+ SLIQTIGRAARN+N   ILYAD IT S+Q A++ET RRR KQ + N  H I  + V
Sbjct: 591 RSERSLIQTIGRAARNLNGHAILYADRITDSMQRAMEETERRRAKQQKFNADHGITARGV 650

Query: 726 KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
           ++ + E+ID ++         +    +    +K     +K L K M   A NL FE+
Sbjct: 651 QKAVRELIDGVVAPTQHDALEAAVPAEFLKDEKALAREIKRLEKLMMDHARNLEFEQ 707


>gi|311113506|ref|YP_003984728.1| excision endonuclease subunit UvrB [Rothia dentocariosa ATCC 17931]
 gi|310945000|gb|ADP41294.1| excision endonuclease subunit UvrB [Rothia dentocariosa ATCC 17931]
          Length = 722

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/711 (49%), Positives = 479/711 (67%), Gaps = 47/711 (6%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
               + +  F++ + Y P+GDQP AI +L + + + EK  +L+G TG+GK+ T A ++E+
Sbjct: 5   PEIKRVVAPFEVVSPYQPAGDQPKAIVELTERVENGEKDIVLMGATGTGKSATAAWLVES 64

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +QRP +VM  NK LAAQL +E +   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSI
Sbjct: 65  VQRPTLVMVQNKTLAAQLANELRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSI 124

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           NE+++R+RHSAT SLL R D +VVS+VSCIYG+G+ E Y + +V L+ GD +++ +LL  
Sbjct: 125 NEEVERLRHSATNSLLTRRDVVVVSTVSCIYGLGTPEEYVEQMVTLERGDEIDRDDLLRQ 184

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
            V  QY R D+   RGTFRV GD++EI P + E+ A R+  FG++IE I   +PLTG+ I
Sbjct: 185 FVNMQYARNDMDFHRGTFRVRGDTVEIIPMY-EEHAIRIEFFGDEIEAIYTLHPLTGEVI 243

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
           R  + + ++  SHYV     +  A+  I++EL+ RL  LE +G+LLEAQRL  R TYDLE
Sbjct: 244 REEDEMYVFPASHYVAGPERMARAIASIEDELQERLQTLESQGKLLEAQRLRMRTTYDLE 303

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M+E  G    IENYSR++ GR+ G  P  L +Y P+D LL +DESHVT+PQI  MY GD 
Sbjct: 304 MMEQMGFTSGIENYSRHIDGRSAGSAPHCLLDYFPDDFLLIIDESHVTVPQIGAMYEGDM 363

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK TL E+GFRLPS MDNRPL+++E+      TI +SATPG +EL Q  G  VEQIIRP
Sbjct: 364 SRKRTLVEHGFRLPSAMDNRPLKWDEFLERIGQTIYLSATPGKYELSQADG-YVEQIIRP 422

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGLVDP + ++  + Q++D+ ++I    ++  R+L+T LTKRMAEDLTEYL +  +RV+Y
Sbjct: 423 TGLVDPEIIVKPTKGQIDDLLEQIQERTERDERVLVTTLTKRMAEDLTEYLVQHGVRVQY 482

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS+V TL+R+E++R+LR+G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSL
Sbjct: 483 LHSDVDTLKRVELLRELRMGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSL 542

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARNV+ +V +YADT+T S++ AIDET RRRE Q  +N++H I+PQ +++KI +
Sbjct: 543 IQTIGRAARNVSGQVHMYADTVTDSMRTAIDETNRRREIQQAYNREHGIDPQPLRKKIAD 602

Query: 732 VIDPILLEDAATTNI-----------------------------SIDAQQLSL------- 755
           + D +  E+  T  +                             +   +  +L       
Sbjct: 603 ITDVLAREEEDTHELLQLRKSGKKGSRTVEAGAKTGSSTSSKIAASTPESDALLAKAQDR 662

Query: 756 ---------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                      +     ++ L +QM LAA+NL FE AAR+RDE+  LK   
Sbjct: 663 VRADGLAAEPAEDLLELIEQLSEQMRLAAENLQFELAARLRDELTDLKKEF 713


>gi|291279064|ref|YP_003495899.1| excinuclease ABC subunit B [Deferribacter desulfuricans SSM1]
 gi|290753766|dbj|BAI80143.1| excinuclease ABC, B subunit [Deferribacter desulfuricans SSM1]
          Length = 661

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/655 (57%), Positives = 490/655 (74%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY   GDQP AI ++++        Q+LLGVTGSGKTFTMA VI+ +  P ++++
Sbjct: 3   FILKSDYKAEGDQPKAIKEIVENFKKGINKQVLLGVTGSGKTFTMANVIKELNVPTLIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+ EFKNFFP NAVEYFVSYYDYYQPEAY+P +D YIEK+SSINE IDRMRH
Sbjct: 63  HNKTLAAQLFGEFKNFFPDNAVEYFVSYYDYYQPEAYLPASDVYIEKDSSINEHIDRMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D ++V+SVSCIYG+GS E+Y   +V L++GD VE + +LS L++ QY+R 
Sbjct: 123 SATRSLLERRDVVIVASVSCIYGLGSPEAYYGKLVSLEVGDEVEIESVLSKLIEIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFR+ GD +E+FPSH + VA+R+  FG++++ ISEF P+TG+ IRN   I IY
Sbjct: 183 DYDFHRGTFRLKGDILEVFPSHEDSVAYRIEFFGDEVDAISEFDPVTGKTIRNRAKIAIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            N+HYVT    +  A+K IK +L  R+   E EG+L+EAQRL+QR+ +D+EML+ TG C+
Sbjct: 243 PNTHYVTANVPMEEAIKQIKMDLIKRVEYFESEGKLIEAQRLQQRVMHDIEMLKETGHCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY  GR  GE PPTL  Y+PED+L+ +DESH+TIPQI GMY GD  RK  L EY
Sbjct: 303 GIENYSRYFEGRESGETPPTLLNYLPEDALIIIDESHITIPQIKGMYHGDRSRKMNLVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL FEE+       + VSATPG +E+    G+I+EQI+RPTGL+DP +E
Sbjct: 363 GFRLPAALDNRPLTFEEFYEKAKRILYVSATPGDFEINDSDGVIIEQIVRPTGLIDPKIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A+TQV+D+Y EI    ++  R+++T LTKRMAEDLT Y  E  IRV Y+HSE+ TLE
Sbjct: 423 VRPAKTQVDDLYKEILNTTKRNERVMVTTLTKRMAEDLTSYYKELGIRVEYLHSEIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI+IIRDLRLGKFDVLVGINLLREGLDIPE  L+AILDADKEGFLRS  +LIQT+GRAAR
Sbjct: 483 RIKIIRDLRLGKFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSDKALIQTVGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN + I YAD +T S++ AI+ET RRR+ Q E+NKKHNI P+++K KI  +++ I  +D
Sbjct: 543 NVNGRAIFYADKMTDSMKRAIEETERRRKIQEEYNKKHNITPETIKSKINNILETIYEKD 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T +I  D   L+L+    K  ++++ K M+ AA++ +FE+AA++RD +   K 
Sbjct: 603 YYTVDID-DELGLNLTG-NRKKDIETIEKAMYKAAEDYDFEKAAKLRDLLFEYKG 655


>gi|86608289|ref|YP_477051.1| excinuclease ABC subunit B [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123503229|sp|Q2JN87|UVRB_SYNJB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|86556831|gb|ABD01788.1| excinuclease ABC, B subunit [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 695

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/693 (52%), Positives = 468/693 (67%), Gaps = 34/693 (4%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ + Y P+GDQP AIA L+K I    + Q LLG TG+GKTFT+A  I+ + RP +
Sbjct: 1   MSEFQLVSPYQPTGDQPKAIAGLVKSISEGHRFQTLLGATGTGKTFTIAHTIQQVGRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           VMA NK LAAQL +E +  FPHNAVEYF+SYYDYYQPEAYVP TDTYI K SSIN++ID 
Sbjct: 61  VMAHNKTLAAQLCNELRELFPHNAVEYFISYYDYYQPEAYVPSTDTYIAKSSSINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+SVSCIYG+G  E Y +  +  K+G  + Q+++L  L   QY
Sbjct: 121 LRHSATRSLFERRDVIVVASVSCIYGLGMPEEYLKASIPFKVGQEINQRDVLRDLASIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+ ++RG FR+ GD +EI P++ ED   R+  FG++IE I    P+TG+ + ++  +
Sbjct: 181 ERNDLELVRGRFRLKGDVLEIVPAY-EDRVIRIEFFGDEIEAIRLIDPVTGEILNSLSAL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           ++Y   H+VTP   L  A+  I++EL+ +L    KEG+LLEAQRLEQR  YDLEML   G
Sbjct: 240 RVYPARHFVTPEAQLERAILNIEQELEEQLALFRKEGKLLEAQRLEQRTRYDLEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI-PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
            C  IENYSR+LTGR  GEPP  L +Y   +D LL VDESHVT+PQI GMY GD  RK  
Sbjct: 300 YCNGIENYSRHLTGRKAGEPPACLVDYFKADDWLLVVDESHVTVPQIRGMYNGDRARKQV 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ--------------- 541
           L ++GFRLPS +DNRPL+ EE+       I VSATPG+WELEQ +               
Sbjct: 360 LVDHGFRLPSALDNRPLKAEEFWAKVHQCIFVSATPGNWELEQSEAQFETRVEDGKTLKF 419

Query: 542 -----GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG-----LRILLTVLT 591
                G ++EQ+IRPTG+VDP V +R    QV+D+  EI L  ++       R+++T LT
Sbjct: 420 YVQGSGRVIEQVIRPTGVVDPEVHVRPTAGQVDDLLGEIYLRLERSQLGPAERVIVTTLT 479

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           KRMAEDLTEYL ER IRVRY+HSE+ ++ERIEI++D R G FDVLVG+NLLREGLD+PE 
Sbjct: 480 KRMAEDLTEYLQERGIRVRYLHSEITSIERIEILQDFREGAFDVLVGVNLLREGLDLPEV 539

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
            LVAILDADKEGFLR++ SLIQ IGRAARNV   V++YADT+T S+  AI ET RRRE Q
Sbjct: 540 SLVAILDADKEGFLRAERSLIQMIGRAARNVRGMVVMYADTMTSSMARAIAETQRRREIQ 599

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPIL-----LEDAATTNISIDAQQLSLSKKKGKAHLKS 766
           L++N++HNI P+ + +K    I   L     L D         AQ++ LS  +    +  
Sbjct: 600 LQYNRQHNITPKPIVKKNSNAILSFLAISRKLNDPDLEKAFQAAQEIPLS--EIPELIGQ 657

Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
           L  +M  AA NL FEEAA++RD IK+L+     
Sbjct: 658 LELKMKEAAKNLEFEEAAQLRDRIKKLRQRLLG 690


>gi|206602984|gb|EDZ39464.1| Exinuclease ABC, B subunit (UvrB) [Leptospirillum sp. Group II
           '5-way CG']
          Length = 701

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/667 (54%), Positives = 471/667 (70%)

Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTM 185
                +         F++ + + PSGDQ  AI  L +GI +    Q LLGVTGSGKTFTM
Sbjct: 10  ADKGRVPTPDPSAQSFRLASGFSPSGDQERAIDVLSEGILAGITHQTLLGVTGSGKTFTM 69

Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           A VI+ +Q+P++++APNK LAAQLY EFK FFP N VEYFVSYYDYYQPEAY+P TDTYI
Sbjct: 70  ANVIQRVQKPSLILAPNKTLAAQLYREFKAFFPDNRVEYFVSYYDYYQPEAYIPSTDTYI 129

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
           EK+S++N+ IDRMRHSAT SLLER D IVV+SVSCIYG+GS ESY +M + L+ G ++ +
Sbjct: 130 EKDSAVNDLIDRMRHSATSSLLERRDTIVVASVSCIYGLGSPESYQKMHLYLERGQALTR 189

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
           ++L+  LV  QY+R DI + RGTFRV GD ++I P+  ED A RV +FG++IE I E  P
Sbjct: 190 EKLIERLVTIQYQRNDIELSRGTFRVRGDVVDIIPASYEDRAIRVELFGDEIERIREMDP 249

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           LTG ++  + ++ IY  +HYV P   L  AM  I+EEL  R+ E  + G+LLEAQR+EQR
Sbjct: 250 LTGHELAVIPSVIIYPGTHYVLPPDELERAMAGIEEELHARIREFRQSGKLLEAQRIEQR 309

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
             +DLEM+   G C  IENYSR+L+GR  G+PPPTLF+Y P+D L+ VDESHV +PQ+ G
Sbjct: 310 TLFDLEMIREIGYCHGIENYSRHLSGRKAGDPPPTLFDYFPKDFLVIVDESHVAVPQVGG 369

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MY GD+ RK +L EYGFRLPS  DNRPL+F E+      ++ VSATPG +EL    G+ V
Sbjct: 370 MYHGDYSRKKSLVEYGFRLPSAFDNRPLKFFEFEKTACQSLYVSATPGPYELRMSNGVTV 429

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           EQIIRPTGL DP +E+  A  QV+ +  EI +   QG R+L+T LTK+MAE+LTEYL ER
Sbjct: 430 EQIIRPTGLCDPEIEVVPATHQVDHLLGEIRITVGQGDRVLVTTLTKKMAENLTEYLEER 489

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +RVRY+HSE+ TLER+EI+RDLR G+FDVLVGINLLREGLD+PE  LVAILDAD+EGFL
Sbjct: 490 QVRVRYLHSEIDTLERMEILRDLRKGEFDVLVGINLLREGLDLPEVSLVAILDADREGFL 549

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS+ SLIQT GRAARNV  +VI Y D +T S++ AI ET RRRE Q+ +N +  I P+ +
Sbjct: 550 RSRRSLIQTAGRAARNVRGRVIFYGDKVTGSMEEAIQETRRRREIQIAYNLERGITPRGI 609

Query: 726 KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           +++I E +  +   D    ++  + +   L K+        +RK M  AA +L FE+AA 
Sbjct: 610 RKEIPESLYAVSEGDYVDVSLVEEVRGRILEKEGDALPDGEIRKLMEKAASDLEFEKAAY 669

Query: 786 IRDEIKR 792
            RD ++ 
Sbjct: 670 YRDILRA 676


>gi|219848326|ref|YP_002462759.1| excinuclease ABC subunit B [Chloroflexus aggregans DSM 9485]
 gi|254764902|sp|B8G8R1|UVRB_CHLAD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|219542585|gb|ACL24323.1| excinuclease ABC, B subunit [Chloroflexus aggregans DSM 9485]
          Length = 664

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/663 (51%), Positives = 461/663 (69%), Gaps = 5/663 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F+++  Y P+GDQP AI +L+ G+ +  + Q LLG TG+GKTF MA +   +QRP +V+
Sbjct: 2   PFRIEAPYQPTGDQPQAIEKLVAGLRAGYRHQTLLGATGTGKTFVMAHIFAQIQRPTLVL 61

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK L +QL++EF+ F P  AVE F+SYYD Y PEAYVP  D YIEKE+SINE+IDR+R
Sbjct: 62  AHNKTLVSQLWAEFREFLPDAAVEMFISYYDEYTPEAYVPSKDLYIEKEASINEEIDRLR 121

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT++LL R D ++V+SVS I+G+GS   Y Q  + L+ G+   + +LL  L+  Q++R
Sbjct: 122 HAATQALLTRRDVLIVASVSAIFGLGSPHDYGQEKIHLRTGEVRNRDKLLRQLIDLQFER 181

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+   RGTFRV GD+++I P++ E  A RV  +G++IE I E  PLTG+ +     ++I
Sbjct: 182 NDVDFQRGTFRVRGDTLDIIPANAE-TAIRVEFWGDEIERIVELDPLTGEVLLKHTAVEI 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y   H+VT +  L  A+  I+ EL  RL ELE  G+LLEAQRL+QR  YDLEML   G C
Sbjct: 241 YPAKHFVTTKEKLQLAIVSIQAELNERLQELEAAGKLLEAQRLKQRTLYDLEMLSEVGYC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L GR PG+ P TL +Y P+D L+F+DESH+TIPQ+ GMY GD  RK TL +
Sbjct: 301 SGIENYSRHLDGRAPGQTPWTLLDYFPDDFLMFIDESHITIPQLRGMYNGDRQRKQTLVD 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+FEE+       I VSATPG +E E+ +  IVEQIIRPTGL+DP +
Sbjct: 361 YGFRLPSALDNRPLKFEEFEQHVYQVIYVSATPGPYEREKSEQ-IVEQIIRPTGLLDPEI 419

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  R Q++D+  EI    ++  R+L+T LTKRMAEDL +YL E  +R  Y+H+++ T+
Sbjct: 420 EVRPTRGQIDDLLGEIRRRVERKQRVLVTTLTKRMAEDLADYLKEMGVRTMYLHADIDTI 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS+TSLIQ IGRAA
Sbjct: 480 ERVEILRDLRLGVYDVVVGINLLREGLDLPEVSLVAILDADKEGYLRSETSLIQIIGRAA 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID---PI 736
           R++  KVI+YADTIT+S+++AI ET RRRE Q+ HN +H I PQ + + + ++ D    +
Sbjct: 540 RHIEGKVIMYADTITRSMEVAIRETQRRREIQMAHNVRHGITPQGIAKGVRDLTDRIRKV 599

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             E          A  + L + +    +K L KQM  AA  L FE+AA +RD+I  L+ +
Sbjct: 600 AEERGEYVTTPETAVPVDLPRDEVLKLIKDLEKQMKQAAKALAFEKAAALRDQIVELRQA 659

Query: 797 PYF 799
              
Sbjct: 660 LAL 662


>gi|284031044|ref|YP_003380975.1| excinuclease ABC subunit B [Kribbella flavida DSM 17836]
 gi|283810337|gb|ADB32176.1| excinuclease ABC, B subunit [Kribbella flavida DSM 17836]
          Length = 701

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/693 (51%), Positives = 475/693 (68%), Gaps = 26/693 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             +++  + +   ++  D+ P+GDQPAAI +L + I++ E+  +LLG TG+GKT T+A +
Sbjct: 2   RQVSDLQRMVAPLKVVADFEPAGDQPAAIDELERRINAGEQDVVLLGATGTGKTATIAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
            E +QRP +++ PNK LAAQ  +E + FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK+
Sbjct: 62  AERIQRPMLILQPNKTLAAQFANELRQFFPENAVEYFVSYYDYYQPEAYVPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV++VSCIYG+GS + Y   ++ +K+GD  ++  L
Sbjct: 122 SSINEEVERLRHSATWSLLTRRDVVVVATVSCIYGLGSADEYLNRMIHVKVGDETDRDGL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R D+   RGTFRV GD++E+FP + E +A RV  FG++IE +   +PLTG
Sbjct: 182 LRKLVGVQYARNDLAGTRGTFRVRGDTLEVFPVYQE-LAVRVEFFGDEIERLMTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + +   + + I A +HYVT    +  A+  I+ EL  RL ELE+ G+LLEAQRL  R TY
Sbjct: 241 EVLSEEDELYIGAATHYVTAPERMEHAIASIEAELADRLAELERGGQLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G+C  IENYSR+  GR PG  P  L +Y PED LL +DESHVT+PQI GMY 
Sbjct: 301 DIEMMRQIGTCSGIENYSRHTDGRAPGTAPHCLLDYFPEDFLLVIDESHVTVPQIGGMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS MDNRPLR+EE+      T+ +SATPG +E ++  G  VEQI
Sbjct: 361 GDMSRKRTLVEHGFRLPSAMDNRPLRWEEFLERIGQTVYLSATPGQYEQDKSDG-FVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGL+DP V ++  + Q++D+  EI L  ++  R+L+T LTK+M+EDLT+YL E  IR
Sbjct: 420 IRPTGLIDPEVIVKPTKGQIDDLIHEIRLRVERDERVLVTTLTKKMSEDLTDYLLEMGIR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            RY+HSEV TL R+E++R+LR+G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 TRYLHSEVDTLRRVELLRELRMGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+  V +YAD IT S++ AIDET RRR KQ+ +N +H ++PQ +++K
Sbjct: 540 RSLIQTIGRAARNVSGAVFMYADKITPSMEQAIDETNRRRAKQVAYNLEHGVDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISIDAQQLS------------------------LSKKKGKAHL 764
           I ++ D +  EDA T  +  + +  S                        +        +
Sbjct: 600 IADITDMLAREDADTAELLGNGRTQSRGKAPVPGGGKAKAGEKAKELAGGMPSSDLAELI 659

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + L  QMH AA  L FE AAR RDEI  LK   
Sbjct: 660 QQLTDQMHNAAAELQFEVAARYRDEISELKKEL 692


>gi|152966886|ref|YP_001362670.1| excinuclease ABC subunit B [Kineococcus radiotolerans SRS30216]
 gi|151361403|gb|ABS04406.1| excinuclease ABC, B subunit [Kineococcus radiotolerans SRS30216]
          Length = 708

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/708 (50%), Positives = 484/708 (68%), Gaps = 35/708 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
               +  + +  F++ +++ PSGDQP AIA+L + +++ E+  +LLG TG+GK+ T A +
Sbjct: 2   RPTTDIERRVAPFEVVSEFSPSGDQPTAIAELARRVNAGEQDVVLLGATGTGKSATTAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEQVQRPTLVMAPNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV++VSCIYG+G+ + Y   +  LK+G ++++ EL
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVVVVATVSCIYGLGTPQEYVDRMTALKVGMTMDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V +QY R D+   RGTFRV GD++EI P + E+ A R+  FG++I+++    PLTG
Sbjct: 182 LRKFVGEQYTRNDLAFTRGTFRVRGDTVEIIPVY-EEHAIRIEFFGDEIDKLYTLNPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + +R  + + I+  SHYV     L  A+  I+ EL+ RL ELE++G+LLEAQRL  R TY
Sbjct: 241 EVLREEQHVYIFPASHYVAGPERLERAVGSIEAELEQRLAELEQQGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML   GSC  IENYSR+   R PG    TL +Y PED LL +DESHVT+PQI GMY 
Sbjct: 301 DLEMLRQVGSCSGIENYSRHFDNRPPGSASNTLLDYFPEDFLLVIDESHVTVPQIGGMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS MDNRPLR+EE+      T+ +SATPG +EL + +G +VEQI
Sbjct: 361 GDMSRKRTLVDFGFRLPSAMDNRPLRWEEFLERTGQTVYLSATPGKYELSRGKG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++  + Q++D+  EI L   +  R+L+T LTK+MAEDLT+Y  ++ +R
Sbjct: 420 IRPTGLVDPQVVVKPTKGQIDDLLHEIRLRTDKDERVLVTTLTKKMAEDLTDYFLDQGVR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS++ TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSDIDTLRRVELLRELRQGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSA 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSL+QTIGRAARNV+ +V +YAD IT S+  AIDET RRREKQ+ +N++  ++P  ++++
Sbjct: 540 TSLVQTIGRAARNVSGEVHMYADRITPSMAQAIDETNRRREKQVAYNRERGVDPMPLRKR 599

Query: 729 IMEVIDPILLEDAATTNI-------------------------------SIDAQQLSLSK 757
           I ++ D I  EDA T  +                                    +  L +
Sbjct: 600 IADITDLIAREDADTAELLAAAQGGGGRAQSRGKAPTPGGGRTRKGAREEAGQSRPGLPQ 659

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
                 ++ L  QMH AA  L FE AAR+RDE+  LK     +G+  +
Sbjct: 660 ADLAQLIQELTDQMHSAAAELQFELAARLRDEVGDLKKE--LRGMRSA 705


>gi|160893509|ref|ZP_02074294.1| hypothetical protein CLOL250_01060 [Clostridium sp. L2-50]
 gi|156864904|gb|EDO58335.1| hypothetical protein CLOL250_01060 [Clostridium sp. L2-50]
          Length = 662

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/660 (52%), Positives = 466/660 (70%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI +L+ G     + + LLGVTGSGKTFTMA VI  + +P +
Sbjct: 1   MDHFKLVSEYQPTGDQPQAIKELVDGFKEGNQFETLLGVTGSGKTFTMANVIAQLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEAYV  TDTYI K+S+IN+ ID+
Sbjct: 61  VLAHNKTLAAQLYSEMKEFFPENAVEYFVSYYDYYQPEAYVASTDTYIAKDSAINDDIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSAT +L++R D +VVSSVSCIYGIG  + Y + ++ L++G   ++  ++  L   QY
Sbjct: 121 MRHSATAALIDRKDVVVVSSVSCIYGIGDPDEYREQMLSLRVGMIKDRDMVIDELTDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV GD +EI P    + A RV  FG++I+ I EF PLTG+  R++   
Sbjct: 181 VRNDMDFHRGTFRVHGDVLEILPVSTFEDAVRVEFFGDEIDRICEFDPLTGEIRRSLNFT 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV     L  A+  I+ EL  R+   ++  +L+EAQR+E+R  +D+EM+  TG
Sbjct: 241 CIFPASHYVVGHEKLERALTKIEAELAERVQYFKENDKLIEAQRIEERTNFDIEMMRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYS  L+GR  GE P TL ++  +D LL +DESH+TIPQ+ GMY GD  RK  L
Sbjct: 301 FCSGIENYSGPLSGRESGETPSTLLDFFGDDFLLIIDESHMTIPQVGGMYAGDRSRKQNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL FEE+       + VSATP  +E E  + +  EQIIRPTGL+DP
Sbjct: 361 VDYGFRLPSALDNRPLNFEEFESKLDQVLFVSATPSKYEAEH-ELLRAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           PV++R    Q++D+  EI    +QG ++L+T LTKRMAEDLT++L E  I+V+Y+HS++ 
Sbjct: 420 PVDVRPVEGQIDDLMSEILKETEQGHKVLVTTLTKRMAEDLTDFLRENGIKVKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EI+RDLR+G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TMERVEIVRDLRMGVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD +T S++ AI ET RRR+ Q  +NK+H I P+++++ I ++I   +
Sbjct: 540 AARNSEGHVIMYADMMTDSMKRAISETNRRRKIQDAYNKEHGIIPKTIQKSIRDLITNEV 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            ED    +   D +  S++KK+ KA +  L K+M++AA +LNFE AA +RDE+K+ K + 
Sbjct: 600 TEDKPVVDAEKDIE--SMTKKELKAMIDKLTKKMNMAAADLNFEMAAIVRDELKKYKEAL 657


>gi|317124799|ref|YP_004098911.1| excinuclease ABC subunit B [Intrasporangium calvum DSM 43043]
 gi|315588887|gb|ADU48184.1| Excinuclease ABC subunit B [Intrasporangium calvum DSM 43043]
          Length = 707

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/699 (49%), Positives = 481/699 (68%), Gaps = 31/699 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
               +  + +  FQ+ ++Y PSGDQP AI +L + I + E+  +LLG TG+GK+ T A +
Sbjct: 2   RPTTDLQRTVAPFQVISEYQPSGDQPRAIDELTRRIRAGEQDVVLLGATGTGKSATTAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAY+P+TDTYIEK+
Sbjct: 62  IEQVQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYIPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+N++++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   + ++K+G+ V++  L
Sbjct: 122 SSVNDEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMARIKVGEEVDRDSL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V+ QY R D+   RGTFRV GD++EI P + E++A R+  FG++IE I   +P+TG
Sbjct: 182 LRRFVEMQYTRNDLAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIERIYTLHPVTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + +   + + ++  SHYV     +  A++ I+ EL+ +L   EK+G+LLEAQRL  R  Y
Sbjct: 241 EVVHEEQEMYVFPASHYVAGPERMERAIRGIELELEDQLASFEKQGKLLEAQRLRMRTAY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G C  IENYSR++ GR PG  P  L +Y P+D LL +DESH T+PQI  MY 
Sbjct: 301 DIEMMRQVGFCSGIENYSRHIDGRGPGSAPNCLIDYFPDDFLLVIDESHQTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ--GIIVE 546
           GD  RK  L E+GFRLPS MDNRPL++EE+      T+ +SATPG +EL +    G  VE
Sbjct: 361 GDMSRKRMLVEHGFRLPSAMDNRPLKWEEFLERIGQTVYLSATPGEYELAKSGRSGPPVE 420

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           QIIRPTGL+DP V ++  + Q++D+ DEI +   +  R+L+T LTK+MAEDLT+YL ++ 
Sbjct: 421 QIIRPTGLIDPEVVLKPTKGQIDDLMDEIRIRVDRNERVLVTTLTKKMAEDLTDYLLDKG 480

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           IRVRY+HS++ TL R+E++R+LR G FDVLVGINLLREGLD+PE  LV+ILDADKEGFLR
Sbjct: 481 IRVRYLHSDIDTLRRVELLRELRQGVFDVLVGINLLREGLDLPEVSLVSILDADKEGFLR 540

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S  SLIQTIGRAARNV+ +V +YAD IT S+Q A+DET RRR+KQL +N++  I+PQ ++
Sbjct: 541 SARSLIQTIGRAARNVSGQVHMYADKITPSMQEALDETNRRRDKQLAYNREKGIDPQPLR 600

Query: 727 EKIMEVIDPILLEDAATTNI-----------------SIDAQQLSLSKKKGKA------- 762
           +KI ++ D +  EDA T  +                 ++ A     S ++G+        
Sbjct: 601 KKIADITDLLQREDADTQELIGSGRMQSRGKSGAARGAVAADVGVSSGRRGERPADLAAA 660

Query: 763 ----HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                ++ + +QMH AA  L+FE AAR+RDE+  LK   
Sbjct: 661 DLAGLIQEMTEQMHQAAAELHFELAARLRDEVSDLKREL 699


>gi|293399737|ref|ZP_06643883.1| excinuclease ABC subunit B [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306137|gb|EFE47380.1| excinuclease ABC subunit B [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 660

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/658 (52%), Positives = 457/658 (69%), Gaps = 3/658 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + ++Y P GDQP AI +L++GI   +K Q+LLG TG+GKTFT++ VI  + +P +V
Sbjct: 6   KLFDLVSEYQPQGDQPKAIKELVEGIKEGKKQQVLLGATGTGKTFTISNVIAQVNKPTLV 65

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            A NK LA QLYSEFK FFP+N VEYFVS +DYYQPEAY+P +DTYI+K ++ N ++D +
Sbjct: 66  FAHNKTLAGQLYSEFKEFFPNNRVEYFVSNFDYYQPEAYIPSSDTYIDKNATTNMELDML 125

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R +A  S+LER D I+++SV+CIYG  + E Y  M   +++GD +++KEL+  LV +QY+
Sbjct: 126 RMAAVNSILERRDTIIIASVACIYGASNPEQYRDMFFSIRVGDIIDRKELMGKLVARQYQ 185

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ +IRGTFRV GD IE+   H +    R+ MF ++IE I E  PLTG+         
Sbjct: 186 RNDMDLIRGTFRVRGDVIEVALGHTDSYILRIEMFDDEIERICEVDPLTGKVQNAYTVYV 245

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  S Y T +  +N A   I  EL+ RL EL+ EG+LLE QRLEQR  YD+E L   G 
Sbjct: 246 VYPASGYATKQEIINRAADTIGAELEERLKELDNEGKLLEKQRLEQRTRYDMEALREFGV 305

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR++ GR PGE P TLF+Y P+D LL VDESHV++PQI GMY GD  RK TL 
Sbjct: 306 CPGIENYSRHIDGRKPGERPYTLFDYFPDDFLLVVDESHVSLPQIRGMYNGDRARKETLV 365

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            YGFRLPS +DNRPLRFEE+  +    + VSATPG +E+E+  G ++EQIIRPTGL+DP 
Sbjct: 366 NYGFRLPSALDNRPLRFEEFEKMYHQAVFVSATPGDYEMEKTHGEVIEQIIRPTGLLDPK 425

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R  + Q++D+ DEI     +  R L+T LT RMAEDL+ YL   + +V ++H EVKT
Sbjct: 426 VEVRPTQGQIDDLVDEIKTRIARNERTLITTLTVRMAEDLSSYLKGMDFKVAWLHHEVKT 485

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIRDLR GK+DVL+GINLLREGLDIPE  L+AILDADKEGFLRS+ SLIQ IGRA
Sbjct: 486 IERTEIIRDLRRGKYDVLIGINLLREGLDIPEVSLIAILDADKEGFLRSERSLIQIIGRA 545

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN + +VI+YADTIT S+Q A+DET RRRE Q+ +NK+H I P+++ + I EV+     
Sbjct: 546 ARNAHGEVIMYADTITGSMQKALDETARRREIQIAYNKEHGITPKTIIKPIHEVVRSKET 605

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           ++     +S  A+         +  L +L K+M  AA  L+FE AA +RD +  L++S
Sbjct: 606 QEMTAKYMSKKAKVTKK---DKEKLLVNLEKEMKEAAKVLDFERAAELRDILIELRNS 660


>gi|312890280|ref|ZP_07749818.1| excinuclease ABC, B subunit [Mucilaginibacter paludis DSM 18603]
 gi|311297244|gb|EFQ74375.1| excinuclease ABC, B subunit [Mucilaginibacter paludis DSM 18603]
          Length = 675

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/667 (50%), Positives = 467/667 (70%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL++GI++ +  Q LLGVTGSGKTFT+A +IE  Q+P ++++
Sbjct: 3   FKITSQYKPTGDQPEAIRQLVQGINNGDNYQTLLGVTGSGKTFTVANIIEQTQKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP N+V YFVSYYDYYQPEA++P ++TYIEK+  INE+I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPENSVNYFVSYYDYYQPEAFIPSSNTYIEKDLQINEEIEKLRI 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             T SL+  R D IVVSS+SCIYG+G+ E ++  + +  +G  V +   L  LV+  Y R
Sbjct: 123 RTTSSLMSGRRDIIVVSSISCIYGMGNPEDFANSVFKFAVGTRVSRNAFLHRLVEILYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RG FRV GD ++I+P+++ D A+RVS FG+DIEE+S F P TG+ I  ++ + +
Sbjct: 183 TTADFRRGNFRVKGDIVDIWPANM-DYAYRVSFFGDDIEELSTFDPTTGKTIEKMQNMVV 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + YV PR     ++  I+EEL+ R  +   +GR LEA+RLE+R+ YDLEM+   G C
Sbjct: 242 YPANLYVAPRERFQQSVWEIQEELETRKKQFIDDGRFLEAKRLEERVNYDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GR PG  P  L +Y P+D L+ +DESHVT+PQI  MY GD  RK +L E
Sbjct: 302 SGIENYSRFFDGRKPGARPFCLLDYFPDDYLMVIDESHVTVPQIRAMYGGDRSRKISLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL F+E+  L P T+ VSATPG +ELE+  G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAALDNRPLNFQEFERLAPQTVYVSATPGDFELEKSGGVVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    QV+D+ DE++   + G RIL+T LTKRMAE+L +Y+ +  I+ RY+HSEVKTL
Sbjct: 422 EVRPVINQVDDLLDEVDKTIKLGDRILVTTLTKRMAEELAKYMDKLGIKCRYIHSEVKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EI+R LRLG+FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 482 QRVEILRGLRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD IT S+++ +DET RRR+ Q+ +N +H I P +V +    +I+   + 
Sbjct: 542 RNDRGRVIMYADKITDSMRITMDETNRRRDIQIAYNLEHGITPITVGKSREAIIEQTSVV 601

Query: 740 D-----------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           D                ++ D     +SK + K  +++ +K+M  AA  ++F  AA++RD
Sbjct: 602 DFKGGVQYAYVENTAATLAADPIVQYMSKPELKKSIENTKKEMLAAAKGMDFLLAAKLRD 661

Query: 789 EIKRLKS 795
           E+  L+ 
Sbjct: 662 EMFALEK 668


>gi|86607183|ref|YP_475946.1| excinuclease ABC subunit B [Synechococcus sp. JA-3-3Ab]
 gi|123505027|sp|Q2JRR3|UVRB_SYNJA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|86555725|gb|ABD00683.1| excinuclease ABC, B subunit [Synechococcus sp. JA-3-3Ab]
          Length = 695

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/691 (51%), Positives = 463/691 (67%), Gaps = 30/691 (4%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ + Y P+GDQP AIA L+K I    + Q LLG TG+GKTFT+A  I+ + RP +
Sbjct: 1   MSEFQLVSSYQPTGDQPKAIAGLVKSILEGHRFQTLLGATGTGKTFTIAHTIQQVGRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           VMAPNK LAAQL +E +  FP+NAVEYF+SYYDYYQPEAYVP TDTYI K SSIN++ID 
Sbjct: 61  VMAPNKTLAAQLCNELRELFPYNAVEYFISYYDYYQPEAYVPSTDTYIAKSSSINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+SVSCIYG+G  E Y +  +  ++G  + Q+E+L  L   QY
Sbjct: 121 LRHSATRSLFERRDVIVVASVSCIYGLGMPEEYLKASIPFQVGQEINQREVLRDLAGIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+ + RG FRV GD +EI P++ ED   R+  FG++IE I    P+TG+ + ++  +
Sbjct: 181 ERNDLELARGRFRVKGDVLEIVPAY-EDRVIRIEFFGDEIEAIRLIDPVTGEILTSLSAL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           ++Y   H+VTP   L  A+  I++EL+ +L    K+G+LLEAQRLEQR  YDLEML   G
Sbjct: 240 RVYPARHFVTPEAQLQQAILNIEQELEEQLAFFRKQGKLLEAQRLEQRTRYDLEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI-PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
            C  IENYSR+LTGR  GEPP  L +Y    D LL VDESHVT+PQI GMY GD  RK  
Sbjct: 300 YCNGIENYSRHLTGRKEGEPPACLVDYFKANDWLLVVDESHVTVPQIRGMYNGDRARKQV 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ--------------- 541
           L ++GFRLPS +DNRPL+ EE+       + VSATPG+WELEQ                 
Sbjct: 360 LVDHGFRLPSALDNRPLKAEEFWAKVHQCVFVSATPGNWELEQSGAQFETVVENGKTLKF 419

Query: 542 -----GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG-----LRILLTVLT 591
                G ++EQ+IRPTG+VDP V +R    QVED+  EI L  ++       R+++T LT
Sbjct: 420 YVPGTGRVIEQVIRPTGVVDPEVHVRPTAGQVEDLLGEIYLRLERSQQGLPERVIVTTLT 479

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           KRMAEDLTEYL ER IRVRY+HSE+ ++ERIEI++D R G FDVLVG+NLLREGLD+PE 
Sbjct: 480 KRMAEDLTEYLQERGIRVRYLHSEISSIERIEILQDFREGAFDVLVGVNLLREGLDLPEV 539

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
            LVAILDADKEGFLR++ SLIQ IGRAARNV   V++YADT+T S+  AI ET RRRE Q
Sbjct: 540 SLVAILDADKEGFLRAERSLIQMIGRAARNVRGTVVMYADTLTGSMARAIAETQRRREIQ 599

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ---LSLSKKKGKAHLKSLR 768
           L++N++HNI P+ + +K    I   L       +  ++        +   +    +  L 
Sbjct: 600 LQYNRQHNITPKPIIKKNSNAILSFLAISRKLNSQDLEKAFPVADEIPLSEIPELIGQLE 659

Query: 769 KQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
            +M  AA NL FEEAA++RD+IK+L+     
Sbjct: 660 LKMKAAAKNLEFEEAAQLRDQIKKLRQRLLG 690


>gi|33592858|ref|NP_880502.1| excinuclease ABC subunit B [Bordetella pertussis Tohama I]
 gi|81836284|sp|Q7VXH4|UVRB_BORPE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|33572506|emb|CAE42082.1| excinuclease ABC subunit B [Bordetella pertussis Tohama I]
 gi|332382271|gb|AEE67118.1| excinuclease ABC subunit B [Bordetella pertussis CS]
          Length = 678

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/644 (55%), Positives = 465/644 (72%), Gaps = 1/644 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F +   Y P+GDQP AI  L +G+      Q LLGVTGSGKT+TMA +I  + RPA+V
Sbjct: 12  SPFHLYQPYPPAGDQPGAIDALTEGVSDGLMFQTLLGVTGSGKTYTMANMIARLGRPALV 71

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++M
Sbjct: 72  LAPNKTLAAQLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQM 131

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+SLLER D ++V +VSCIYGIG+   Y  M++ L+ GD + ++E+L+ LV  QY 
Sbjct: 132 RLSATKSLLERRDTVIVGTVSCIYGIGNPGDYHAMVLILRTGDRISRREVLARLVAMQYT 191

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RG FRV  ++I+IFP+   ++A R+++F ++IE +  F PLTG+  + +    
Sbjct: 192 RNDADFTRGVFRVRCETIDIFPAESPELALRLTLFDDEIESLELFDPLTGRVRQKLPRFT 251

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYVTPR T+  A++ IKEEL+ RL +L  +G+L+EAQRLEQR  +DLEML+  G 
Sbjct: 252 VYPGSHYVTPRETVLRAIETIKEELRERLAQLIADGKLVEAQRLEQRTRFDLEMLQELGF 311

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHVTI Q+ GMYRGD  RK TL 
Sbjct: 312 CKGIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQLGGMYRGDRSRKETLV 371

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPLR EE+       + VSATP ++E E     +VEQ++RPTGLVDP 
Sbjct: 372 QYGFRLPSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHADN-VVEQVVRPTGLVDPI 430

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R A TQV+D+  EI+  A    R+L+T LTKRMAEDLT++L E  +RVRY+HS++ T
Sbjct: 431 VEVRPAHTQVDDLLGEIHKRAALQERVLVTTLTKRMAEDLTDFLSEHGVRVRYLHSDIDT 490

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 491 VERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 550

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N + ILYAD IT S++ AIDET RRR KQ++HN  H I  + V + + E+ID ++ 
Sbjct: 551 ARNLNGRAILYADRITDSMRRAIDETERRRAKQIQHNTDHGITARGVSKAVRELIDGVVA 610

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                   S    ++   +K     ++ L K M   A NL FE+
Sbjct: 611 PAGHDALESAVPAEVLTDEKAMAREIRRLEKLMMDHARNLEFEQ 654


>gi|282897605|ref|ZP_06305605.1| Excinuclease ABC, B subunit [Raphidiopsis brookii D9]
 gi|281197528|gb|EFA72424.1| Excinuclease ABC, B subunit [Raphidiopsis brookii D9]
          Length = 665

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/667 (52%), Positives = 463/667 (69%), Gaps = 6/667 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +Q  + P+GDQP AIAQ++K I  +++ Q LLG TG+GKTF++A VIE + +P +
Sbjct: 1   MAQFTLQAPFSPTGDQPQAIAQMIKNIEGKQRYQTLLGATGTGKTFSIAAVIEKVGKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFPHNAVEYFVSYYDYYQPEAY+P TDTYIEK S+IN +ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPHNAVEYFVSYYDYYQPEAYIPVTDTYIEKTSAINSEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  + L+IG  ++ +E++  L+  QY
Sbjct: 121 LRHSATRSLFEREDVIVVASISCIYGLGMPAEYLKAAINLEIGMEIDPREVIRKLISVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI + RG FRV GD IEI P++ ED   RV  FG+DI+ I    P+ G+ + ++E I
Sbjct: 181 SRNDIEMGRGKFRVRGDVIEIGPAY-EDRIVRVEFFGDDIDAIRYVDPVNGEIMSSLERI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP+  L  A   I +ELK   ++LE+ G+L+EAQR++QR  YD+E+L   G
Sbjct: 240 SIYPARHFVTPKERLEIACVEIADELKAYKLKLEELGKLVEAQRIDQRTRYDIELLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSRYL GR  GEPP  L +Y P+D LL +DESHVT+PQI GMY GD  RK  L
Sbjct: 300 YCNGVENYSRYLAGRQAGEPPECLIDYFPQDWLLVIDESHVTVPQIRGMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+       I VSATPG WE+E     IVEQIIRPTG++DP
Sbjct: 360 IDHGFRLPSAGDNRPLKAEEFWQKVSQCIFVSATPGDWEIEISGKNIVEQIIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    QV+++  EI+       R+L+T LTKRMAEDLTEYL  R++RVRY+HSE+ 
Sbjct: 420 QIYVRPTAGQVDNLLGEIHQRVDNSERVLITTLTKRMAEDLTEYLENRSVRVRYLHSEIN 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           +++RIEI++DLR G FDVLVG+NLLREGLD+PE  LV I+DADKEGFLR++ SLIQTIGR
Sbjct: 480 SIQRIEILQDLRNGSFDVLVGVNLLREGLDLPEVSLVVIMDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK----IMEVI 733
           AAR++   VI+YAD +T S+  A++ET RRR  Q+ +N+ H I PQ V +K    I+  +
Sbjct: 540 AARHLRGTVIMYADNLTGSMIKAMEETDRRRGIQMAYNQIHKITPQPVFKKSGNSILSFL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           D     +A    + +D Q   L+ ++    + +L KQMH AA  + FE AA++RD IK L
Sbjct: 600 DVSRRLNANDLKL-VDEQWHDLNLEEIPQLITTLEKQMHDAAKKMEFEHAAKLRDRIKSL 658

Query: 794 KSSPYFQ 800
           +     +
Sbjct: 659 RDKILGR 665


>gi|317506145|ref|ZP_07963968.1| excinuclease ABC [Segniliparus rugosus ATCC BAA-974]
 gi|316255567|gb|EFV14814.1| excinuclease ABC [Segniliparus rugosus ATCC BAA-974]
          Length = 708

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/700 (49%), Positives = 476/700 (68%), Gaps = 14/700 (2%)

Query: 117 LKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGV 176
            ++           +    +    F++ +++ P+GDQP+AIA+L + + + E+  +LLG 
Sbjct: 9   HEHEYPLGAVPPGMLAEVRRLEQPFEVVSEHQPAGDQPSAIAELQRRVEAGERDVVLLGA 68

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           TG+GK+ T A +IE +QRP +++APNK LAAQL +E +   P NAVEYFVSYYDYYQPEA
Sbjct: 69  TGTGKSATTAWLIERLQRPTLLIAPNKTLAAQLANELREMLPKNAVEYFVSYYDYYQPEA 128

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           Y+ +TDTYIEK+SSIN+ ++R+RHSATRSLL R D +VV+SVSCIYG+GS +SY    V 
Sbjct: 129 YIAQTDTYIEKDSSINDDVERLRHSATRSLLSRRDVVVVASVSCIYGLGSPQSYLDRSVL 188

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L  G  V + +LL  LV  QY R D+   RGTFRV GD++EI P++ E+ A R+  FG++
Sbjct: 189 LVKGQEVARDQLLRLLVDMQYDRNDVAFTRGTFRVRGDTLEIIPAY-EEFAVRIEFFGDE 247

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           I+ +S    LTG  +  V+ ++I+  +HYVT    +   M+ I++EL  RL  LE +G+L
Sbjct: 248 IDALSYLNKLTGDVVAEVDQVRIFPATHYVTGEGRMAQVMEAIRQELAERLATLEAQGKL 307

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           LEAQRL  R  YDLEM++  G C  IENYSR++ GR PG  P TL +Y PED L  +DES
Sbjct: 308 LEAQRLRMRTEYDLEMIQQVGFCSGIENYSRHMDGRGPGTAPATLLDYFPEDFLTVIDES 367

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536
           HVT+PQI  M+ GD  RK  L EYGFRLPS +DNRPL +EE++     T+ +SATPG +E
Sbjct: 368 HVTVPQIGAMFEGDMARKRNLVEYGFRLPSAVDNRPLTWEEFSERVGQTVYLSATPGPYE 427

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           L Q  G  VEQ+IRPTGLVDP V ++  + Q++D+  EI L  ++  R+L+T LTK+MAE
Sbjct: 428 LGQAGGEFVEQVIRPTGLVDPHVVVKPTQGQIDDLVHEIRLRTERDERVLVTTLTKKMAE 487

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DLT+YL E  IRVRY+HS++ TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAI
Sbjct: 488 DLTDYLLELGIRVRYLHSDIDTLRRVELLRELRQGEYDVLVGINLLREGLDLPEVSLVAI 547

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
           LDADKEGFLRS TSLIQTIGRAARNV+ +V +YAD IT S++ AI+ET RRREKQ+ +N 
Sbjct: 548 LDADKEGFLRSTTSLIQTIGRAARNVSGEVHMYADRITDSMRNAIEETERRREKQIAYNL 607

Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNISID-----------AQQLSLSKKKGKAHLK 765
           +  I+P+ +++KI +++D +  E A T +                      K   +A + 
Sbjct: 608 ERGIDPKPLRKKIADILDRVYEESADTADAEAKNGKAEKKTAKKKAAGGTPKSDLEALIA 667

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
            L +QM  AA  L FE AAR+RDE+   K     +G++ +
Sbjct: 668 ELNEQMLSAARELRFELAARLRDELAEYKKE--LRGMEAA 705


>gi|310657817|ref|YP_003935538.1| excinulease of nucleotide excision repair [Clostridium sticklandii
           DSM 519]
 gi|308824595|emb|CBH20633.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Clostridium sticklandii]
          Length = 654

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/657 (53%), Positives = 474/657 (72%), Gaps = 5/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AI  +++ I S  K Q LLGVTGSGKTFTMA +IE  Q+P +V+A
Sbjct: 3   FKIVSDYKPMGDQPQAIDTMVRSIESGAKHQTLLGVTGSGKTFTMANIIERTQKPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV  +DTYIEK+SSIN++ID++RH
Sbjct: 63  HNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVAHSDTYIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT ++LER D I+V+SVSCIYG+G    Y +M+V L+ G + ++ +++  LV+ QY+R 
Sbjct: 123 SATAAVLERRDVIIVASVSCIYGLGDPSDYEEMMVSLRPGQNKDRDDVIKELVEIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI  +RGTFRV GD IEI P + ++   R+  FG++IE ISE   +TG+ +     + I+
Sbjct: 183 DINFVRGTFRVRGDIIEILPINTDERGIRIEFFGDEIERISEIDYITGEIVGVRNHVAIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVT +  L  A++ I+ EL+ R+   ++    LEAQR+EQR  YDLEML+  G+C+
Sbjct: 243 PASHYVTSKEKLAKAIEKIEVELEERIEYFKERDMFLEAQRIEQRTKYDLEMLKEIGTCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR+ GE P TL ++ P+D L+ +DESHV +PQ+  MY GD  RK TL +Y
Sbjct: 303 GIENYSRHLSGRDEGERPFTLMDFFPDDFLIIIDESHVMLPQLHAMYAGDRSRKGTLIDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRFEE+  +    + VSATP  +E+E       EQ+IRPTGLVDP +E
Sbjct: 363 GFRLPSAFDNRPLRFEEFEQVANQILYVSATPSKYEMEHSVAFG-EQVIRPTGLVDPEIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EIN   ++  R+L+T LTK+M+E+LT+YL E +++VRY+HS+++TLE
Sbjct: 422 IRPIKGQIDDLLFEINERVKKKERVLITTLTKKMSENLTQYLKEASVKVRYLHSDIETLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT+GRAAR
Sbjct: 482 RIEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTVGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD +T S+Q AI ET RRRE Q+ +NK++NI P ++ ++I  VI      +
Sbjct: 542 NSNGKVIMYADNMTGSMQRAITETYRRREIQINYNKENNITPTTIFKEIRGVIAATSAAE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                   +    ++ +++ K  +  L  +M  AA+ L FE+AA +RD I+ L+S  
Sbjct: 602 GEGNYSVRE----TIDRERVKDEIIKLSTEMVEAAEALEFEKAASLRDRIRELESKL 654


>gi|260578003|ref|ZP_05845926.1| excinuclease ABC, subunit B [Corynebacterium jeikeium ATCC 43734]
 gi|258603830|gb|EEW17084.1| excinuclease ABC, subunit B [Corynebacterium jeikeium ATCC 43734]
          Length = 707

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/695 (50%), Positives = 476/695 (68%), Gaps = 25/695 (3%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
               +    +    F++ +DY P+GDQP AI +L + +   E+  +L+G TG+GK+ T A
Sbjct: 14  EFRPVGEVERSNAKFEVISDYKPAGDQPKAIEELHQRLDRGERDVVLMGATGTGKSATAA 73

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            +IE  QRP +VMAPNK LAAQL +E ++  P+NAVEYFVSYYDYYQPEAY+ +TDTYIE
Sbjct: 74  WLIEKEQRPTLVMAPNKTLAAQLANELRSLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIE 133

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+SSINE ++R+RHSAT +LL R D +VVSSVSCIYG+G+ +SY    V LK+ + VE+ 
Sbjct: 134 KDSSINEDVERLRHSATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLKVDEEVERD 193

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
             L  LV  QY R D+   RGTFRV GD+++I P++ E++A RV  FG+DI+ +   +PL
Sbjct: 194 RFLRLLVDIQYSRNDVAFTRGTFRVKGDTVDIIPAY-EELAVRVEFFGDDIDALYYIHPL 252

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG  IR V+ ++I+  +HYV     +  AM+ IKEEL  RL ELE  G+LLEAQRL  R 
Sbjct: 253 TGDVIRQVDELRIFPATHYVAGPERMEKAMQAIKEELAQRLEELENRGKLLEAQRLRMRT 312

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
            YDLEM++  G    IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM
Sbjct: 313 EYDLEMIQQVGFTSGIENYSRHIDGRAAGSAPATLIDYFPEDFLTIIDESHVTVPQIGGM 372

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           + GD  RK  L E+GFRLPS +DNRPL +EE++  +   + +SATPG +E+   QG  VE
Sbjct: 373 FEGDMSRKRNLVEHGFRLPSALDNRPLTWEEFDDRKGQCVYMSATPGDYEIAAAQGEYVE 432

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q+IRPTGLVDP VE+R    Q++D+ ++I    ++  R+L+T LTKRMAEDLT+YL E  
Sbjct: 433 QVIRPTGLVDPKVEVRPTEGQIDDLIEQIRQRTEKNERVLVTTLTKRMAEDLTDYLLEHG 492

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           ++VRYMHS++ TL+R+E++R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR
Sbjct: 493 VKVRYMHSDIDTLKRVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLR 552

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S+ SLIQTIGRAARNV+ +VI+YAD +T S+Q AIDET RRR KQ+ +N++H I+PQ ++
Sbjct: 553 SERSLIQTIGRAARNVSGEVIMYADKVTDSMQYAIDETERRRAKQIAYNEEHGIDPQPLR 612

Query: 727 EKIMEVIDPILLEDAATT------------------------NISIDAQQLSLSKKKGKA 762
           +KI +++D +   +A +                          +   +    +++ + + 
Sbjct: 613 KKIADILDQVAELEAESGVDAAGGSGAESSAGGRGESPEADWALVRGSSDEPMARPQLEK 672

Query: 763 HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            ++ + +QM  AA  L FE A R+RDEI  LK   
Sbjct: 673 LIQEMTEQMKSAAKELKFELAGRLRDEIADLKKEL 707


>gi|149924580|ref|ZP_01912936.1| excinuclease ABC subunit B [Plesiocystis pacifica SIR-1]
 gi|149814546|gb|EDM74130.1| excinuclease ABC subunit B [Plesiocystis pacifica SIR-1]
          Length = 722

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/695 (52%), Positives = 479/695 (68%), Gaps = 17/695 (2%)

Query: 123 WTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182
           W           +     F + +++ P G QP AIA+L+ G+ + +  Q+LLG+TGSGKT
Sbjct: 28  WDLDNPVRPTIAAD--RPFTLVSEFEPRGSQPNAIAELVSGLDNGDADQVLLGITGSGKT 85

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242
           FT+A VI   QRP +++A NK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAYVP TD
Sbjct: 86  FTIANVIAKTQRPTLILAHNKTLAAQLYGEFKALFPDNAVEYFVSYYDYYQPEAYVPSTD 145

Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302
           TYIEK+S+INEQIDRMRH+AT SLL R D I+V+SVSCI+GIGS E+Y  MI  + +G+ 
Sbjct: 146 TYIEKDSNINEQIDRMRHAATFSLLSRRDVIIVASVSCIFGIGSAEAYYGMIAPIAVGEE 205

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
           +E+  LL  LV  QY+R D+   RGTFRV GD +E+FP++ +D A RV  FG+++E I E
Sbjct: 206 LERDVLLRRLVAMQYERNDVDFHRGTFRVRGDVVEVFPAYEDDTAVRVEFFGDEVEAIRE 265

Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
             PL G    +++ + I+  SHYVTP   L  A++ I+ EL+ RL EL    RL+EAQRL
Sbjct: 266 IDPLRGVTRGHMKRVTIFPASHYVTPASKLRAAIERIRGELQERLQELRANERLVEAQRL 325

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482
           EQR  +DLEMLE  G C  IENYSR+LTGR  G+ PPTL +Y P+D +L VDESHVT+PQ
Sbjct: 326 EQRCMFDLEMLEEMGRCSGIENYSRHLTGREAGQAPPTLLDYFPKDFMLVVDESHVTLPQ 385

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542
           +  MY+GD  RK+TL E+GFRLPS +DNRPL+F+E++      I VSATPG++ELE+  G
Sbjct: 386 VRAMYKGDRARKSTLVEHGFRLPSALDNRPLQFDEFDERIAQAIYVSATPGNYELERTSG 445

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           ++ EQIIRPTGL+DPP+E+R    QV+D+ DEI + A +  R+L+T LTKRMAEDLTEY 
Sbjct: 446 VVTEQIIRPTGLLDPPIEMRPTAGQVDDLLDEIRVRADKDERVLVTTLTKRMAEDLTEYY 505

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +RVRY+H++V TLER+ IIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKE
Sbjct: 506 ADLGVRVRYLHADVDTLERVAIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKE 565

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
           GFLR++ SL+QT GRAARNV+ +VI+YAD +T S++ A+DET RRR  Q  +N KH I P
Sbjct: 566 GFLRARRSLVQTCGRAARNVDGRVIMYADRVTDSMRAAMDETERRRTIQSAYNAKHGITP 625

Query: 723 QSVKEKIMEVIDPILLEDAATTNISI---------------DAQQLSLSKKKGKAHLKSL 767
           +S + KI  +        +A  +                   A+   L   +    ++ L
Sbjct: 626 RSTRAKITPLEQERAAPGSAGGSAGKRGSKAAAKQLPVGLDRARDQDLLPSELPERIREL 685

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGL 802
            ++M   A  L +EEAA +RD I+ L++     G 
Sbjct: 686 EQEMRALAKGLRYEEAATLRDRIRVLEAKQLAYGG 720


>gi|331697648|ref|YP_004333887.1| UvrABC system protein B [Pseudonocardia dioxanivorans CB1190]
 gi|326952337|gb|AEA26034.1| UvrABC system protein B [Pseudonocardia dioxanivorans CB1190]
          Length = 733

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/725 (49%), Positives = 492/725 (67%), Gaps = 39/725 (5%)

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169
           I+   P+  +           + +  +    F++ ++Y P+GDQPAAI +L + + + E+
Sbjct: 16  IRQGMPVAHS-------EHRPVGDIPRTGGRFEVVSEYEPAGDQPAAIDELERRLRAGEQ 68

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
             +LLG TG+GK+ T A +IE +QRP +VMAPNK LAAQL +E +   PHNAVEYFVSYY
Sbjct: 69  DVVLLGATGTGKSATTAWLIERVQRPTLVMAPNKTLAAQLANELREMLPHNAVEYFVSYY 128

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
           DYYQPEAY+ +TDTYIEK+SSIN  ++R+RHSAT++LL R D +VV+SVSCIYG+G+ +S
Sbjct: 129 DYYQPEAYIAQTDTYIEKDSSINSDVERLRHSATQNLLSRRDVVVVASVSCIYGLGTPQS 188

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           Y    VQL +G  VE+  LL +LV  QY R D+   RGTFRV GD++EI P++ E++A R
Sbjct: 189 YLDRSVQLDVGSEVERDALLRALVDVQYTRNDMAFARGTFRVRGDTVEIIPAY-EELAIR 247

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           +  FG++IE +   +PLTG  IR V+T++I+  +HYV     +  A++ I+ EL+ RL E
Sbjct: 248 IEFFGDEIEALYYLHPLTGDVIRQVDTVRIFPATHYVAGPERMERAVRDIEAELEERLAE 307

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
           LE++G++LEAQRL  R  YD+EM+   G C  IENYSR++ GR  G  P TL +Y P+D 
Sbjct: 308 LERQGKMLEAQRLRMRTQYDIEMIRQVGFCSGIENYSRHIDGRAAGSAPATLLDYFPDDF 367

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LL +DESHVT+PQI GMY GD  RK  L E+GFRLPS +DNRPL +EE+      T+ +S
Sbjct: 368 LLVIDESHVTVPQIGGMYEGDMSRKRNLVEFGFRLPSAVDNRPLTWEEFADRIGQTVYLS 427

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
           ATPG++EL +  G  VEQ+IRPTGLVDP V ++  + Q++D+  EI L  ++  R+L+T 
Sbjct: 428 ATPGAYELSRTGGEFVEQVIRPTGLVDPEVVVKPTKGQIDDLVHEIRLRTERDERVLVTT 487

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           LTK+MAEDLT+YL E  IRVRY+HSEV TL R+E++R LR G++DVLVGINLLREGLD+P
Sbjct: 488 LTKKMAEDLTDYLLELGIRVRYLHSEVDTLRRVELLRQLRTGEYDVLVGINLLREGLDLP 547

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           E  LVAILDADKEGFLRS TSLIQTIGRAARNV+ +V +YADT+T+S+Q AIDET RRR 
Sbjct: 548 EVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMYADTVTESMQHAIDETDRRRA 607

Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDA---------------------------- 741
           KQ+ +N +  I+PQ +++KI +++D +  E                              
Sbjct: 608 KQIAYNTEKGIDPQPLRKKIADILDQVYREAEDGEVPVGGSGRNQSRGKRAAGEPGRATA 667

Query: 742 -ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
            A++ I       S+ + +    ++ +  QM  AA +L FE AAR+RDEI  LK     +
Sbjct: 668 SASSGIVAGRDTKSMPRAELADLIQQMSDQMLAAARDLQFELAARLRDEIADLKKE--MR 725

Query: 801 GLDDS 805
           G+D +
Sbjct: 726 GMDAA 730


>gi|291544070|emb|CBL17179.1| Excinuclease ABC subunit B [Ruminococcus sp. 18P13]
          Length = 656

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/656 (52%), Positives = 462/656 (70%), Gaps = 6/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P+GDQP AI QL++G++  EK Q+LLGVTGSGKTFTMA VI  + RP +V+A
Sbjct: 6   FHLKSDYQPAGDQPEAIQQLVEGLNQGEKGQVLLGVTGSGKTFTMANVIAQVNRPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NKILAAQL SEFK FFP NAVEYFVSYYDYYQPEAY+P TD++IEK+ +IN++IDR+RH
Sbjct: 66  HNKILAAQLCSEFKEFFPDNAVEYFVSYYDYYQPEAYIPSTDSFIEKDCAINDEIDRLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+V+SVSCIY +GS E Y  M+V ++ G    +++L+S LV+ QY+R 
Sbjct: 126 SATTALAERRDVIIVASVSCIYSLGSPEEYRSMVVSVRQGMEKSREQLMSELVRIQYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + R  FRV GD +EI  S   D A R+  FG++I+ I+E   +TG+ +  ++   I+
Sbjct: 186 DISLERNKFRVRGDVLEICTSGTADHALRIEFFGDEIDRITEINMVTGEILATLQHAAIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+  R  L  A+  I+ E++ R+   E   +L+EAQR+ QR  YD+EML   G C 
Sbjct: 246 PASHYIVGRDKLEDAIADIEAEMQERVAFFEANHQLIEAQRIAQRTRYDIEMLREIGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+ R PG  P TL ++ P+D LL VDESHVT+PQ+  M  GD  RK TL +Y
Sbjct: 306 GIENYSRVLSRRPPGSVPYTLLDHFPKDFLLIVDESHVTLPQVRAMQAGDHARKKTLIDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F E+N      I VSATPG  E E+  G IVEQ+IRPTGL+DP V 
Sbjct: 366 GFRLPSAYDNRPLNFAEFNEHIGQAIYVSATPGPLEKERS-GRIVEQVIRPTGLLDPLVT 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q+ED+  EI+    +  R+L+T LTKRMAEDLT+YL    +RVRY+H ++ T++
Sbjct: 425 VKPIQGQMEDLLSEIHKRTDRQERVLVTTLTKRMAEDLTDYLEGMGVRVRYLHHDIDTIK 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR+G+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 485 RMEIIRDLRMGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YAD +T S++ AI ET RRR  Q+ +N+ H I P+++ + + EV++    E 
Sbjct: 545 NAQGEVIMYADCVTGSMERAITETERRRSIQMAYNEAHGIIPKTIHKDVREVLEISSKE- 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                +  +     +SKK+ +  + +L  QM  +A  L FE AA +RD+I +L++ 
Sbjct: 604 ----TVEQETHAPKMSKKERQKLIATLTDQMKQSAKMLEFEHAAYLRDKIAQLQAE 655


>gi|326201746|ref|ZP_08191617.1| excinuclease ABC, B subunit [Clostridium papyrosolvens DSM 2782]
 gi|325988346|gb|EGD49171.1| excinuclease ABC, B subunit [Clostridium papyrosolvens DSM 2782]
          Length = 657

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/659 (53%), Positives = 475/659 (72%), Gaps = 2/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P GDQP AIA++ K I   +K Q LLGVTGSGKT+T+AKVIE +Q+P +
Sbjct: 1   MNKFEVISPYKPMGDQPEAIAKISKAIQEGQKHQTLLGVTGSGKTYTVAKVIEQVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEFK FFP+N VEYFVSYYDYYQPEAY+P TDTYIEK+SS+NE+ID+
Sbjct: 61  VIAHNKTLAAQLCSEFKEFFPNNVVEYFVSYYDYYQPEAYIPSTDTYIEKDSSVNEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G  E Y+ +++ L++G   ++ E++  LV  QY
Sbjct: 121 LRHSATAALFERRDVIIVASVSCIYGLGDPEDYTDLMLSLRVGMQKDRDEVIRKLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R +I   RG FR  GD +EIFP++  +   RV  FG++IE I+E   LTG+ I   E I
Sbjct: 181 ERNEIDFRRGRFRARGDVLEIFPANSSEKVLRVEFFGDEIERITEVDYLTGEIIGTREHI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++  SHY T RP ++ AM  I++EL+ RL + + EG+LLEAQRLEQR  YDLEM+   G
Sbjct: 241 AVFPASHYATTRPKMDRAMVTIEKELEERLEQFKMEGKLLEAQRLEQRTRYDLEMMSEIG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+++GR PG  P TL +Y P+D LL +DESHVT+ Q+  MY GD  RK +L
Sbjct: 301 FCQGIENYSRHISGREPGSSPYTLMDYFPDDYLLVIDESHVTVSQVGAMYNGDRSRKESL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL+F E+       + VSATP  +E E     IVEQI+RPTGL+DP
Sbjct: 361 VEYGFRLPSAFDNRPLKFHEFEERVNQVVYVSATPAVYEREHSTQ-IVEQILRPTGLIDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + IR  + Q++D+  EIN  A++  R+L+T LTK+MAEDLT+Y+ E +I+V+Y+HS+V 
Sbjct: 420 EIIIRPVKGQIDDLIGEINTRAEKKQRVLVTTLTKKMAEDLTDYMKELDIKVKYLHSDVV 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T ER+EIIRDLRLG FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TFERMEIIRDLRLGVFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   KVI+YAD IT S+  AI ET RRR+ Q+++NKKH I P ++++ +  V++   
Sbjct: 540 AARNSEGKVIMYADNITGSMHRAISETNRRRQIQMDYNKKHGIVPTTIQKSVRNVLEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + +      +   +   +S+++ +  +  L+ +M  AA +L FE AA +RD+I+ L+  
Sbjct: 600 VAEEEDKYYA-GKKATHMSEQELEKLIAKLQSEMKQAAADLQFERAAELRDKIESLRGK 657


>gi|315225699|ref|ZP_07867506.1| excision endonuclease subunit UvrB [Capnocytophaga ochracea F0287]
 gi|314944362|gb|EFS96404.1| excision endonuclease subunit UvrB [Capnocytophaga ochracea F0287]
          Length = 665

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/661 (52%), Positives = 469/661 (70%), Gaps = 7/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ P+GDQP AI QL+KGI   +K Q+LLGVTGSGKTFT+A V+E +QRP +V+A
Sbjct: 3   FNIVSDFAPTGDQPQAIDQLVKGIERDDKYQVLLGVTGSGKTFTIANVVERIQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P T TYIEK+ SIN++I+++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYIPSTGTYIEKDLSINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T +LL  R D +VV+SVSC+YGIG+   + + ++ LK GD + + +L+  LV+  Y R
Sbjct: 123 STTSALLSGRRDVLVVASVSCLYGIGNPVEFQKNVITLKQGDILPRTKLMHRLVQSLYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                  G FR+ GD +++FP + +D A+R+  FG++IEEI +F P T   + + +++ I
Sbjct: 183 TTAEFRHGNFRIKGDVLDVFPGY-DDNAFRIHFFGDEIEEIEQFDPTTNHVLDHYQSLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+++L  ++   E  G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDILQKAIWNIQQDLVKQVEFFEALGKPLEAKRLKERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ +DESHVT+ Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLIDYFPDDFLMVIDESHVTVSQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL+Q QG+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQQTQGVYVEQVIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  RIL+T LTKRMAE+LT+YL    IR RY+HS+V TL
Sbjct: 422 EVRPSANQIDDLVEEIQLRTEKDERILVTTLTKRMAEELTKYLTRIGIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K I+YAD IT S+Q  ID+T  RREKQ+ +NK HNI PQ + +KI   +    + 
Sbjct: 542 RNVNGKAIMYADKITDSMQRTIDDTNYRREKQMNYNKAHNITPQPLHKKIENSLSKSPVT 601

Query: 740 D-----AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +     +     + +AQ + LS K+ +  +K  RK M +AA  L+F +AA+ RDE+K+L+
Sbjct: 602 EFHYDPSFKERTAAEAQSVYLSAKELEKKIKETRKLMEVAAKELDFVKAAQYRDELKKLQ 661

Query: 795 S 795
            
Sbjct: 662 E 662


>gi|329920416|ref|ZP_08277148.1| excinuclease ABC, B subunit [Lactobacillus iners SPIN 1401G]
 gi|328936092|gb|EGG32545.1| excinuclease ABC, B subunit [Lactobacillus iners SPIN 1401G]
          Length = 665

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/664 (49%), Positives = 459/664 (69%), Gaps = 3/664 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +    F++ + + P+GDQ  AI QL        K Q+L G TG+GKTFTMA +I  + 
Sbjct: 3   RKQKNKRFELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLN 62

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P +V++ NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN+
Sbjct: 63  KPTLVISHNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAIND 122

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +ID++RH+ T +L++R D IVV+SVSCI+G+G    Y++ ++ L +G+  E+  LL  LV
Sbjct: 123 EIDQLRHATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLV 182

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R D+ + RG FRV GD +EIFP+   +  +RV  FG++I++I E   LTG+ +  
Sbjct: 183 NIQYDRNDLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGK 242

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            E I ++  +H++T    +  A+  IK+EL +++   + +G+LLEAQR++QR  YD+EM+
Sbjct: 243 CEQISLFPATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMM 302

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           +  G    IENYSR++  R  GEPP TL ++ P+D L+ +DESH T+P++  MY GD  R
Sbjct: 303 QEVGYTNGIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL +YGFRLPS +DNRPL+  E+       + VSATPG +EL +    +VEQIIRPTG
Sbjct: 363 KQTLIDYGFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRT-DKVVEQIIRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VE+R    Q++D+  EIN+  ++  R+ +T LTK+M+EDLT+YL E  I+V+Y+H
Sbjct: 422 LLDPIVEVRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+KTLER++IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLRS   LIQ
Sbjct: 482 SEIKTLERMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSNRPLIQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            +GRAARN N KVI+YAD IT S+Q AID T RRR  Q+  N+KH+I P+++ + I ++I
Sbjct: 542 MMGRAARNENGKVIMYADHITDSMQAAIDVTERRRHIQMLFNQKHHIIPKTIVKPIRDII 601

Query: 734 DPILLEDAATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                 D    +I+   D     LS K+ +  + +L +QM +AA  L+FE AA +RD I 
Sbjct: 602 SHTKDVDQKDKHINDFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAII 661

Query: 792 RLKS 795
            LK 
Sbjct: 662 DLKK 665


>gi|325294874|ref|YP_004281388.1| UvrABC system protein B [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065322|gb|ADY73329.1| UvrABC system protein B [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 661

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/659 (52%), Positives = 463/659 (70%), Gaps = 7/659 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + P GDQP AI +L +GI    K Q LLG+TGSGKT+T+AKVIE +Q+P +V
Sbjct: 3   RRFKVVSPFKPKGDQPKAIKELSEGIKKGLKYQTLLGITGSGKTYTIAKVIEEVQKPTLV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           ++ NK+LAAQLY E KNFFP NAVEYF+SYYDYYQPE+Y+P  D YIEK+ SIN  IDRM
Sbjct: 63  ISHNKVLAAQLYHELKNFFPENAVEYFISYYDYYQPESYIPSRDLYIEKDCSINPVIDRM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSAT SLL R D IVVSSVSCIYG+GS + Y  + ++ ++G+ +E+ E++  LV   Y+
Sbjct: 123 RHSATVSLLTRQDVIVVSSVSCIYGLGSPDYYKTLSLRFQVGEEIERDEVIRKLVTLGYE 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +  +  G F+V GD I+IFP+ +ED   RV +FG++++ I        + ++   +  
Sbjct: 183 RSEYELKPGIFKVRGDVIDIFPADVEDHFVRVELFGDEVDSIVMLDYFNQKVLKEFNSYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHY TP   +  A++ I++EL+ R+    +EG+ LEA+R+EQR  YD+E+L   G 
Sbjct: 243 VYPASHYATPYSKIVEAVQSIEKELEERVKYFLREGKELEARRIEQRTKYDIELLLEIGH 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L GR PGEPP TL  Y P+D L+ +DESHVT+PQI  M+RGD  RK  L 
Sbjct: 303 CKGIENYSRHLDGRKPGEPPFTLLNYFPDDFLVVIDESHVTVPQIKAMWRGDRARKYNLI 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPS  DNRPL FEE+    P  I VSATPG +ELE  +  +VEQIIRPTGL+DP 
Sbjct: 363 EHGFRLPSAYDNRPLNFEEFLKRVPQAIFVSATPGPFELEVSE-KVVEQIIRPTGLLDPI 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R    Q++ +  EI    ++  RIL+T LTK+ AE+L++YL E+ I+ +YMHSE+ +
Sbjct: 422 VEVRKTEGQIDHLISEIKKRVEKNERILITTLTKKSAEELSKYLLEKGIKAKYMHSEIDS 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIR LR G+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRA
Sbjct: 482 VERVEIIRGLRSGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVILYAD IT S++ AI+ET RRR+ Q E+NKK+ I PQ+VK      ++  +L
Sbjct: 542 ARNVNGKVILYADKITPSMKKAIEETERRRKIQKEYNKKYGITPQTVKRA----LETSIL 597

Query: 739 EDAATTNISIDAQQL--SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           EDA         ++     ++++    +  L K+M  AA N  FE AA +RD+IK L+ 
Sbjct: 598 EDAGIMPFYKKEERENTPKTEEELLKEIARLEKEMKEAAKNWEFERAAELRDKIKELQK 656


>gi|309808271|ref|ZP_07702178.1| excinuclease ABC, B subunit [Lactobacillus iners LactinV 01V1-a]
 gi|312870824|ref|ZP_07730930.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 3008A-a]
 gi|315653879|ref|ZP_07906795.1| excision endonuclease subunit UvrB [Lactobacillus iners ATCC 55195]
 gi|325913350|ref|ZP_08175718.1| excinuclease ABC, B subunit [Lactobacillus iners UPII 60-B]
 gi|308168474|gb|EFO70585.1| excinuclease ABC, B subunit [Lactobacillus iners LactinV 01V1-a]
 gi|311093700|gb|EFQ52038.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 3008A-a]
 gi|315488575|gb|EFU78221.1| excision endonuclease subunit UvrB [Lactobacillus iners ATCC 55195]
 gi|325477453|gb|EGC80597.1| excinuclease ABC, B subunit [Lactobacillus iners UPII 60-B]
          Length = 665

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/664 (49%), Positives = 459/664 (69%), Gaps = 3/664 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +    F++ + + P+GDQ  AI QL        K Q+L G TG+GKTFTMA +I  + 
Sbjct: 3   RKQKNKRFELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLN 62

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P +V++ NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN+
Sbjct: 63  KPTLVISHNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAIND 122

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +ID++RH+ T +L++R D IVV+SVSCI+G+G    Y++ ++ L +G+  E+  LL  LV
Sbjct: 123 EIDQLRHATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLV 182

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R D+ + RG FRV GD +EIFP+   +  +RV  FG++I++I E   LTG+ +  
Sbjct: 183 NIQYDRNDLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGK 242

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            E I ++  +H++T    +  A+  IK+EL +++   + +G+LLEAQR++QR  YD+EM+
Sbjct: 243 CEQISLFPATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMM 302

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           +  G    IENYSR++  R  GEPP TL ++ P+D L+ +DESH T+P++  MY GD  R
Sbjct: 303 QEVGYTNGIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL +YGFRLPS +DNRPL+  E+       + VSATPG +EL +    +VEQIIRPTG
Sbjct: 363 KQTLIDYGFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRT-DKVVEQIIRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VE+R    Q++D+  EIN+  ++  R+ +T LTK+M+EDLT+YL E  I+V+Y+H
Sbjct: 422 LLDPIVEVRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+KTLER++IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLRS   LIQ
Sbjct: 482 SEIKTLERMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLIQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            +GRAARN N KVI+YAD IT S+Q AID T RRR  Q+  N+KH+I P+++ + I ++I
Sbjct: 542 MMGRAARNENGKVIMYADHITDSMQAAIDVTERRRHIQMLFNQKHHIIPKTIVKPIRDII 601

Query: 734 DPILLEDAATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                 D    +I+   D     LS K+ +  + +L +QM +AA  L+FE AA +RD I 
Sbjct: 602 SHTKDVDQKDKHINDFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAII 661

Query: 792 RLKS 795
            LK 
Sbjct: 662 DLKK 665


>gi|124516185|gb|EAY57693.1| Exinuclease ABC, B subunit (UvrB) [Leptospirillum rubarum]
          Length = 701

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/653 (55%), Positives = 471/653 (72%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++   + PSGDQ  AI  L +G+ + +  Q LLGVTGSGKTFTMA VI+ +Q+P++++
Sbjct: 24  MFRLAAGFSPSGDQERAIDVLSEGVLAGKTHQTLLGVTGSGKTFTMANVIQRVQKPSLIL 83

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY EFK FFP N VEYFVSYYDYYQPEAY+P TDTYIEK+S++N+ IDRMR
Sbjct: 84  APNKTLAAQLYREFKAFFPDNRVEYFVSYYDYYQPEAYIPSTDTYIEKDSAVNDLIDRMR 143

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT SLLER D IVV+SVSCIYG+GS ESY +M + L+ G ++ +++L+  LV  QY+R
Sbjct: 144 HAATSSLLERRDTIVVASVSCIYGLGSPESYQKMHLYLERGQTLTREKLIERLVTIQYQR 203

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RGTFRV GD ++I P+  ED A RV +FG++IE I E  PLTG ++  + ++ I
Sbjct: 204 NDIELSRGTFRVRGDVVDIIPASYEDRAIRVELFGDEIERIREMDPLTGHELAVIPSVII 263

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYV P   L+ AM  I+EEL  R+ E  + G+LLEAQR+EQR  +DLEM++  G C
Sbjct: 264 YPGTHYVLPPDELDRAMAGIEEELHARIREFRQSGKLLEAQRIEQRTLFDLEMIKEIGYC 323

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L+GR  GEPPPTLF+Y P+D L+ VDESHV IPQ+ GMY GD+ RK +L E
Sbjct: 324 HGIENYSRHLSGRKAGEPPPTLFDYFPDDFLVIVDESHVAIPQVGGMYHGDYSRKKSLVE 383

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS  DNRPL+F E+      ++ VSATPG +EL    G+ VEQIIRPTGL DP +
Sbjct: 384 YGFRLPSAFDNRPLKFFEFEKTARQSLYVSATPGPYELRMSGGVTVEQIIRPTGLCDPEI 443

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+  A  QV+ +  EI     QG R+L+T LTK+MAE+LTEYL ER +RVRY+HSE+ TL
Sbjct: 444 EVVPATHQVDHLLGEIRTTVGQGDRVLVTTLTKKMAENLTEYLEERQVRVRYLHSEIDTL 503

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+RDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT GRAA
Sbjct: 504 ERMEILRDLRKGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSRRSLIQTAGRAA 563

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  +VI Y D +T S++ AI ET RRRE Q+ +N +  I P+ ++++I E +  +   
Sbjct: 564 RNVRGRVIFYGDKVTGSMEEAILETRRRREIQMAYNLERGITPRGIRKEIPESLYAVSEG 623

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           D    ++  + +   L K+        +RK M  AA +L FE+AA  RD ++ 
Sbjct: 624 DYVDVSLVEEVRGRLLEKEGDALPDGEIRKLMEKAASDLEFEKAAYYRDILRA 676


>gi|23428622|gb|AAM12395.1| excinuclease subunit B [Zymomonas mobilis subsp. mobilis CP4]
          Length = 739

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/698 (58%), Positives = 508/698 (72%), Gaps = 14/698 (2%)

Query: 106 LARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH 165
           +   I++     +N   + PHR       ++    F++ +DY P+GDQP AI+ L K I 
Sbjct: 1   MTIAIRTTLDEPENHSDFVPHRPSRPEK-TEPSKPFRLVSDYEPAGDQPQAISALCKDIQ 59

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
             E+ Q+LLGVTGSGKTFTMAKVIE +QRP++++APNKILAAQLY EFK FFP NAVE+F
Sbjct: 60  KGERDQVLLGVTGSGKTFTMAKVIEKLQRPSLILAPNKILAAQLYGEFKRFFPENAVEFF 119

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
           VSYYDYYQPEAYVPRTDTYIEK+S+INE IDRMRH+ATRSLLER D I+V+SVSC+YGIG
Sbjct: 120 VSYYDYYQPEAYVPRTDTYIEKDSAINEAIDRMRHAATRSLLEREDVIIVASVSCLYGIG 179

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           SV++YS M  +L  G  V+Q+E++  LV  QYKR ++   RG+FRV GD++EIFPSH ED
Sbjct: 180 SVDTYSSMTFRLLKGQLVDQREIIRRLVALQYKRNEVAFGRGSFRVKGDTLEIFPSHYED 239

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           +AWR+S FG++IEEISEF PLTG KI  ++ IKIYANSHYVTP PTL  A   I+ EL  
Sbjct: 240 MAWRISFFGDEIEEISEFDPLTGVKIAKLDQIKIYANSHYVTPEPTLKAANNAIRRELDN 299

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS----IENYSRYLTGRNPGEPPPTL 461
           RL E +     L+    ++R      +      C        NYSR+LTGR PGEPPPTL
Sbjct: 300 RLRESK-----LKVNYWKRRFGKAHRIRSGNDGCNRCLFRYSNYSRFLTGRAPGEPPPTL 354

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
           FEY+P+++LLFVDESH TIPQI+GM RGD+ RK TLA+YGFRLPSC+DNRPLRFEEWN +
Sbjct: 355 FEYLPDNALLFVDESHQTIPQINGMSRGDYRRKTTLADYGFRLPSCIDNRPLRFEEWNAM 414

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           RP  + VSATPG WELEQ  G+ VEQIIRPTGLVDP +E+R    QV+++  E    A  
Sbjct: 415 RPQNVYVSATPGPWELEQTGGVFVEQIIRPTGLVDPAIEVRPIEEQVDNLIFEAKKTAAA 474

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G R L+T LTKRMAEDLTEY+YE  ++VRYMHS+V+T+ERIE+IRDLRLG +DVL+GINL
Sbjct: 475 GWRSLVTTLTKRMAEDLTEYMYEAGLKVRYMHSDVETIERIELIRDLRLGVYDVLIGINL 534

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           LREGLDIPECGLVA+LDADKEGFLRS+TSLIQTIGRAARN   +VILY D IT S+  A+
Sbjct: 535 LREGLDIPECGLVAVLDADKEGFLRSETSLIQTIGRAARNAEGRVILYGDKITGSMARAM 594

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761
            ET RRR KQ+  NK HNI P +VK ++ +++    + +++    +I+        K   
Sbjct: 595 AETERRRIKQIAWNKAHNITPATVKRQVDDIVGHFGVVNSSEAAATIENH----DPKVLA 650

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
             +    K+M  AA NL FE+AA++RD + +LK     
Sbjct: 651 RSISETEKEMLEAAANLEFEKAAQLRDVLHQLKRQELG 688


>gi|302533819|ref|ZP_07286161.1| excinuclease ABC, B subunit [Streptomyces sp. C]
 gi|302442714|gb|EFL14530.1| excinuclease ABC, B subunit [Streptomyces sp. C]
          Length = 716

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/708 (50%), Positives = 478/708 (67%), Gaps = 41/708 (5%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++   + +  F++ + Y PSGDQPAAIA+L K I + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVSKIERTVAPFEVVSPYQPSGDQPAAIAELEKRIRAGEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +V LK+G+ +++ +L
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVPLKVGEEIDRDQL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG
Sbjct: 182 LRRFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I     + ++  SHYV     +  A+  I+ EL  RL ELEK+G++LEAQRL  R TY
Sbjct: 241 EVISEDRELYVFPASHYVAGPERMEKAITGIEAELAERLAELEKQGKMLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEM+   GSC  IENYS ++  R  G  P TL +Y PED LL +DESHVT+PQI  MY 
Sbjct: 301 DLEMMRQIGSCSGIENYSLHMDDRERGSAPNTLIDYFPEDFLLVIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G  VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLKWEEFLERVGQTVYLSATPGKYELSRSDG-FVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+
Sbjct: 420 IRPTGLVDPEVVVKPTEGQIDDLVHEIRGRVEKDERVLVTTLTKKMAEDLTDYFLELGIQ 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD +T +++ AI+ET RRREKQ+ +N  + I+PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADKMTPAMEKAIEETNRRREKQIAYNTANGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKK------------------------------ 758
           I +++  I  E+  T  +     + +   K                              
Sbjct: 600 INDIVATIAREELDTEELLGTGYRQAKDGKAGKAPVPALGGKAAAAAKGKGGKTAKAAAA 659

Query: 759 ---------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                    +  A ++ + ++M  AA  L FE AARIRDE+  LK   
Sbjct: 660 AAPTDRPAAELAALIEQMTERMRGAAAELQFEVAARIRDEVGELKKEL 707


>gi|148241173|ref|YP_001226330.1| excinuclease ABC subunit B [Synechococcus sp. RCC307]
 gi|147849483|emb|CAK26977.1| Helicase subunit of the DNA excision repair complex [Synechococcus
           sp. RCC307]
          Length = 668

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/666 (51%), Positives = 463/666 (69%), Gaps = 7/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  Y P+GDQP AI  L++G+   ++ Q LLG TG+GKTF++A VI+   RPA+V+A
Sbjct: 3   FRLEAPYSPNGDQPTAIETLVQGVEGGQRYQTLLGATGTGKTFSIANVIQRTGRPALVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFPHNAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID +RH
Sbjct: 63  HNKTLAAQLCNELRQFFPHNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  V   +G+++  +  L  LV  QY R 
Sbjct: 123 SATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVPFSVGETLNLRGSLRELVNNQYSRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I RG FRV GD +EI P++ ED   R+ +FG+++E I    P TG+ ++++ETI IY
Sbjct: 183 DTEIARGRFRVKGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSLETINIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP+  L +A+  I++EL+ RL  L   G+LLEAQRLEQR  YD+EML+  G C 
Sbjct: 242 PAKHFVTPKDRLESAVGAIRQELRDRLDWLNANGKLLEAQRLEQRTVYDIEMLQQVGYCN 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L ++
Sbjct: 302 GVENYARHLAGREAGTPPECLIDYFPDDWLLVVDESHVTCSQLQAMYNGDRSRKQVLIDH 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+  E+      TI VSATPG WE++   G + EQ+IRPTG++DP +E
Sbjct: 362 GFRLPSAADNRPLKGTEFWDKAKQTIFVSATPGDWEMQVSDGQVAEQVIRPTGVLDPLIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  QV+D+  EI + A++  R+L+T LTKRMAEDL++YL E  ++VRYMHSE+ ++E
Sbjct: 422 VRPSGGQVDDLLGEIRVRAERNERVLVTTLTKRMAEDLSDYLAENQVKVRYMHSEIHSIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII+DLR G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAAR
Sbjct: 482 RIEIIQDLRNGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK-----IMEVIDP 735
           +V+   +LYAD +T S+  AI ET RRR  Q+ +N+KH I P +  +K     I+  ++ 
Sbjct: 542 HVSGVALLYADNMTDSMVKAISETERRRAIQMAYNEKHGITPHAAGKKSTHNPILAFLEM 601

Query: 736 I-LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              L D        +A+Q ++  +     ++ L ++M  AA  L+FEEAA +RD IK+L+
Sbjct: 602 SRKLNDEQLDEAVEEAKQDAVPLENLPELIQQLEERMKGAASKLDFEEAANLRDRIKQLR 661

Query: 795 SSPYFQ 800
                +
Sbjct: 662 QKLVGK 667


>gi|87301622|ref|ZP_01084462.1| excinuclease ABC subunit B [Synechococcus sp. WH 5701]
 gi|87283839|gb|EAQ75793.1| excinuclease ABC subunit B [Synechococcus sp. WH 5701]
          Length = 668

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/668 (52%), Positives = 456/668 (68%), Gaps = 6/668 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++Q  Y P GDQP AI  L+ G+ + E+ Q LLG TG+GKTFT+A VI    RPA+
Sbjct: 1   MARFELQAPYEPKGDQPTAIEALVDGVDAGERYQTLLGATGTGKTFTIANVIARTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G+++  +  L  LV  QY
Sbjct: 121 LRHSATRSLFERQDVIVVASISCIYGLGIPSEYLKAAVRFQVGEALNLRGSLRELVNNQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RG FRV GD +EI P++ ED   R+ +FG+++E I    P TG+ ++++ETI
Sbjct: 181 SRNDVEVGRGRFRVKGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSLETI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP+  L +A+  I++EL  RL  L  +GRLLEAQRLEQR TYDLEML+  G
Sbjct: 240 NIYPAKHFVTPKDRLESAIAAIRDELHQRLDVLHGQGRLLEAQRLEQRTTYDLEMLQQVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLAGRPAGTPPECLIDYFPDDWLLVVDESHVTCSQLHAMYNGDQARKQVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+  E+      TI VSATPG+WE+EQ  G + +Q+IRPTG++DP
Sbjct: 360 VEHGFRLPSAADNRPLKAAEFWSKARQTIFVSATPGTWEMEQSHGHVAQQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    QV+D+  EI L A +  R L+T LTKRMAEDLT+YL E  +RVRY+HSE+ 
Sbjct: 420 VVEVRPTEGQVDDLLGEIRLRAGRDERTLITTLTKRMAEDLTDYLAENGVRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLR G+FD LVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRNGEFDALVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V+   +LYAD +T S+  AI ET RRR  Q  +N+ H I P +  ++    I   L
Sbjct: 540 AARHVDGTALLYADNLTDSMARAISETERRRAIQQTYNETHGIIPSAAGKRAGNAILSFL 599

Query: 738 L-----EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                 +D A T  +  A    +        +  L  +M  AA NL FEEAA +RD IK+
Sbjct: 600 EVSRRAQDEAPTAEAEPASFAMVPLDALPELILELEDKMKAAAKNLEFEEAANLRDRIKK 659

Query: 793 LKSSPYFQ 800
           L+     +
Sbjct: 660 LRQKLVGR 667


>gi|296121246|ref|YP_003629024.1| excinuclease ABC subunit B [Planctomyces limnophilus DSM 3776]
 gi|296013586|gb|ADG66825.1| excinuclease ABC, B subunit [Planctomyces limnophilus DSM 3776]
          Length = 707

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/660 (54%), Positives = 477/660 (72%), Gaps = 4/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  FQ+ + + P+GDQP AI  L+KG+ +  K Q LLGVTGSGKTFTMA VIE +QRPA+
Sbjct: 1   MPQFQIDSRFRPAGDQPKAIEALVKGLKNDRKNQTLLGVTGSGKTFTMANVIEQLQRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY+EFK FFPHNAV YFVSYYDYYQPEAY+P+ D YIEK+SSINE+IDR
Sbjct: 61  VLSHNKTLAAQLYAEFKEFFPHNAVTYFVSYYDYYQPEAYIPQRDIYIEKDSSINEEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R  AT +L+ R D IVV+SVSCIYG+GS + Y +M++ L+ G+S+++ ELL  L   QY
Sbjct: 121 LRLLATSALVSRRDVIVVASVSCIYGLGSPKDYLEMMIPLRKGESIDRDELLRKLCDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D    R  FRV GD I+++P++ E+ A+R+ ++G++I+++S  +P+T  ++R++E I
Sbjct: 181 TRNDHAPERANFRVRGDVIDVWPAY-EEFAYRIELWGDEIDKLSIIHPVTSDEVRSLEEI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   HYV P   + +A+  I++EL  +L + +KEG+LLEAQRL  R  +DLE+L   G
Sbjct: 240 YIYPAKHYVLPEDRVASAVAEIEKELAEQLEKFKKEGKLLEAQRLNARTRHDLELLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L+GR PGEPP TL ++ P D L F+DESHVTIPQI  M+ GD  RK TL
Sbjct: 300 FCPGIENYSRALSGRPPGEPPYTLLDFFPNDFLTFIDESHVTIPQIRAMFNGDHARKTTL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLP  +DNRPL+F+EW   R   I VSATP  WELEQ QG IVEQ+IRPTGLVDP
Sbjct: 360 VEHGFRLPMALDNRPLKFDEWETRRKQAIFVSATPSDWELEQSQGEIVEQVIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + I  +R QV+ +   I   A++  R+L+T LTK++ EDLT YL E  +R  ++HSE+ 
Sbjct: 420 VIHIHPSRGQVQHLMGLIKGRAEKDERVLVTALTKKLCEDLTAYLREEGLRCAWLHSELD 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER+EIIR+LR GK+D LVG+NLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 AFERVEIIRELREGKYDTLVGVNLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           +ARNVN++V LYAD++T S+QLAIDET RRRE Q+ +NKKH I P+++++ I   I+   
Sbjct: 540 SARNVNAEVYLYADSVTNSMQLAIDETNRRRELQVAYNKKHGITPETIRKSIRRGIEEDA 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             +      S  + ++     +   ++  L  +M  AA++L+FE AA++RD I +LK   
Sbjct: 600 EANKIVQQASGKSSEVEYVTLE---YISELEAEMLKAAESLDFERAAQLRDRILQLKKQV 656


>gi|222444870|ref|ZP_03607385.1| hypothetical protein METSMIALI_00484 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434435|gb|EEE41600.1| hypothetical protein METSMIALI_00484 [Methanobrevibacter smithii
           DSM 2375]
          Length = 655

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/658 (53%), Positives = 460/658 (69%), Gaps = 9/658 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P GDQP AI  L+ GI+  EK Q LLGVTGSGKTFTMA VIE +Q+P +
Sbjct: 1   MKKFKLNSPYKPLGDQPKAINSLVDGINKGEKEQTLLGVTGSGKTFTMANVIEKVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+I+KESS+NE+ID 
Sbjct: 61  VISHNKTLAAQLYEEFKEFFPDNAVEYFVSYYDYYQPEAYVPRTDTFIDKESSVNEEIDI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSAT+SLL R+D IVVSSVSCIYG+GS E Y +    + +GD+ ++ +++  LV  QY
Sbjct: 121 MRHSATQSLLSRDDVIVVSSVSCIYGVGSPEDYGEFAFGIAVGDNYDRSDIIRKLVFMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RG FRV GD IEI P H      RV +FG++I+ IS    +TG+K  +++  
Sbjct: 181 ERNDIEFARGHFRVRGDVIEINPVHGTP-PVRVELFGDEIDAISLIDKVTGKKTESLKRY 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+   H+V  +  ++TA++ I +EL  RL E     +LLEAQRLEQR  +D+EML+  G
Sbjct: 240 MIFPAKHFVVGQDKMDTAIRNISDELDERLNEFNLSNKLLEAQRLEQRTRFDIEMLQEMG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYS +L+GR  GE P +L +Y PED L  +DESHVT+PQI GMY GD  RK TL
Sbjct: 300 YCPGVENYSMHLSGRKWGEKPYSLLKYFPEDYLTIIDESHVTLPQIRGMYNGDRARKETL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  +NRPLRF+E+       I VSATPG++EL +    IVEQIIRPTGLVDP
Sbjct: 360 VEHGFRLPSAKENRPLRFDEFESSINQIIYVSATPGAYELSRSSN-IVEQIIRPTGLVDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V IR  + QVED+  E+   A++  R+L+T LTK+MAEDLT+Y  +  ++VRYMHSE+ 
Sbjct: 419 EVIIRPVKGQVEDLLGEVKKRAKKDERVLVTTLTKKMAEDLTDYYAKIGVKVRYMHSEID 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERI+I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR++TSLIQTIGR
Sbjct: 479 TLERIDIVDDLRRGTFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNETSLIQTIGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N +VI+Y D +T S++ A   T++RR+ Q+++N+KH I P++ K  + +      
Sbjct: 539 AARNINGQVIMYVDEMTDSVKNATAITSKRRKIQIKYNEKHGIVPKTTKRALKD------ 592

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +  A            + K + +  +  L   M  AA  L+FE AA +RD+I  LK 
Sbjct: 593 -KKVAEDLDIEGTDISKIPKDELRLLISDLENDMKEAAAKLDFERAASLRDQIATLKG 649


>gi|148643639|ref|YP_001274152.1| excinuclease ABC subunit B [Methanobrevibacter smithii ATCC 35061]
 gi|189037982|sp|A5UNK6|UVRB_METS3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|148552656|gb|ABQ87784.1| excinuclease ABC, subunit B, UvrB [Methanobrevibacter smithii ATCC
           35061]
          Length = 655

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/658 (53%), Positives = 460/658 (69%), Gaps = 9/658 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P GDQP AI  L+ GI+  EK Q LLGVTGSGKTFTMA VIE +Q+P +
Sbjct: 1   MKKFKLNSPYKPLGDQPKAINSLVDGINKGEKEQTLLGVTGSGKTFTMANVIEKVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+I+KESS+NE+ID 
Sbjct: 61  VISHNKTLAAQLYEEFKEFFPDNAVEYFVSYYDYYQPEAYVPRTDTFIDKESSVNEEIDI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSAT+SLL R+D IVVSSVSCIYGIGS E Y +    + +GD+ ++ +++  LV  QY
Sbjct: 121 MRHSATQSLLSRDDVIVVSSVSCIYGIGSPEDYGEFAFGIAVGDNYDRSDIIRKLVFMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RG FRV GD IEI P H      RV +FG++I+ IS    +TG+K  +++  
Sbjct: 181 ERNDIEFARGHFRVRGDVIEINPVHGTP-PVRVELFGDEIDAISLIDKVTGKKTESLKRY 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+   H+V  +  ++TA++ I +EL  RL E     +LLEAQRLEQR  +D+EML+  G
Sbjct: 240 MIFPAKHFVVGQDKMDTAIRNISDELDERLNEFNLSNKLLEAQRLEQRTRFDIEMLQEMG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYS +L+GR  GE P +L +Y PED L  +DESHVT+PQI GMY GD  RK TL
Sbjct: 300 YCPGVENYSMHLSGRKWGEKPYSLLKYFPEDYLTIIDESHVTLPQIRGMYNGDRARKETL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  +NRPLRF+E+       I VSATPG++EL +    IVEQIIRPTGLVDP
Sbjct: 360 VEHGFRLPSAKENRPLRFDEFESSINQIIYVSATPGAYELSRSSN-IVEQIIRPTGLVDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V IR  + QVED+  E+   A++  R+L+T LTK+MAEDLT+Y  +  ++VRYMHSE+ 
Sbjct: 419 EVIIRPVKGQVEDLLGEVKKRAKKDERVLVTTLTKKMAEDLTDYYAKIGVKVRYMHSEID 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERI+I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR++TSLIQTIGR
Sbjct: 479 TLERIDIVDDLRRGTFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNETSLIQTIGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N +VI+Y D +T S++ A   T++RR+ Q+++N+KH I P++ K  + +      
Sbjct: 539 AARNINGQVIMYVDEMTDSVKNATAITSKRRKIQIKYNEKHGIVPKTTKRALKD------ 592

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +  A            + K + +  +  L   M  AA  L+FE AA +RD+I  LK 
Sbjct: 593 -KKVAEDLDIEGTDISKIPKDELRLLISDLENDMKEAAAKLDFERAASLRDQIATLKG 649


>gi|332882227|ref|ZP_08449857.1| excinuclease ABC, B subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332679850|gb|EGJ52817.1| excinuclease ABC, B subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 666

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/659 (51%), Positives = 467/659 (70%), Gaps = 7/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ P GDQP AI QL++GI   +K Q+LLGVTGSGKTFT+A V+E +QRP +V+A
Sbjct: 3   FSIVSDFAPMGDQPQAIQQLVEGIEKDDKYQVLLGVTGSGKTFTIANVVEKIQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P T TYIEK+ SIN++I+++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYIPTTGTYIEKDLSINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T +LL  R D +VV+SVSC+YGIG+   + + ++ +K GD + + +L+  LV+  Y R
Sbjct: 123 STTSALLSGRRDVLVVASVSCLYGIGNPVEFQKNVITIKRGDILPRTKLMHRLVQSLYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                  G FR+ GD +++FP + +D A+R+  FG++IEEI +F P T   + + E++ I
Sbjct: 183 TTADFRHGNFRIKGDVLDVFPGY-DDNAFRIHFFGDEIEEIEQFDPTTNHILDHYESLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+++L  ++   E  G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDILQKAIWNIQQDLMKQVEFFEASGKALEAKRLKERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR  G  P  L +Y P+D L+ +DESHVT+PQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREAGTRPFCLIDYFPDDFLMVIDESHVTMPQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL++ QG+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQKAQGVYVEQVIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R ++ Q++D+ +EI +  ++  RIL+T LTKRMAE+LT+YL    +R RY+HS+V TL
Sbjct: 422 EVRPSQNQIDDLVEEIQVRVEKDERILVTTLTKRMAEELTKYLTRIGVRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K I+YAD IT S+Q  ID+T  RREKQ+ +NK H I PQ +++KI   +    + 
Sbjct: 542 RNVNGKAIMYADKITDSMQRTIDDTNYRREKQMNYNKAHGITPQPLQKKIENSLSKSPIT 601

Query: 740 D-----AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +     +     + +AQ + ++ K+ +  +K  RK M  AA +L+F +AA+ RDEI RL
Sbjct: 602 EFHYDPSFAHRQAAEAQAVYMTAKEIEKKIKETRKLMEAAAKDLDFLKAAQYRDEIARL 660


>gi|317405208|gb|EFV85547.1| UvrABC system protein B [Achromobacter xylosoxidans C54]
          Length = 679

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/644 (55%), Positives = 463/644 (71%), Gaps = 1/644 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F +   Y P+GDQP AI  L++G+      Q LLGVTGSGKT+TMA VI  + RPA+V
Sbjct: 16  SPFHLYQPYPPAGDQPGAIEGLIQGVQDGLMYQTLLGVTGSGKTYTMANVIAQLGRPALV 75

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++M
Sbjct: 76  LAPNKTLAAQLYAEMREFFPKNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQM 135

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+SLLER D I+V +VSCIYGIG+   Y  M++ L+ GD + ++E+L+ LV  QY 
Sbjct: 136 RLSATKSLLERRDTIIVGTVSCIYGIGNPGDYHAMVLILRAGDQISRREILARLVAMQYT 195

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RG FRV G++I+IFP+   ++A R+++F ++IE +  F PLTG+  + +    
Sbjct: 196 RNDAEFTRGVFRVRGETIDIFPAESAELALRLTLFDDEIESLELFDPLTGRIRQKLPRFT 255

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYVTPR T+  A++ IKEEL+ R      +G L+EAQRLEQR  +DLEML+  G 
Sbjct: 256 VYPGSHYVTPRDTVLRAIETIKEELRERTKRFVDDGHLVEAQRLEQRTRFDLEMLQELGF 315

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHVTI Q+S MYRGD  RK TL 
Sbjct: 316 CKGIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQLSAMYRGDRSRKETLV 375

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL+ EE+       + VSATP ++E E     +VEQ++RPTGLVDP 
Sbjct: 376 QYGFRLPSALDNRPLKLEEFEARMRQCVFVSATPAAYEKEHADN-VVEQVVRPTGLVDPI 434

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+  ARTQV+D+  +I     QG R+L+T LTKRMAEDLT++L E  +RVRY+HS++ T
Sbjct: 435 VEVLPARTQVDDLLGQIKARTSQGERVLVTTLTKRMAEDLTDFLTEHGVRVRYLHSDIDT 494

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 495 VERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 554

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N   ILYAD IT S+Q A++ET+RRR KQL+ N  H I  + V++ + E+ID I+ 
Sbjct: 555 ARNLNGHAILYADRITDSMQRAMEETSRRRAKQLQFNADHGITARGVQKAVRELIDGIVA 614

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                   +    +L   +K     +K L K M   A NL FE+
Sbjct: 615 PVQHDALEAAVPAELLKDEKALAREIKRLEKLMMDHARNLEFEQ 658


>gi|262193339|ref|YP_003264548.1| excinuclease ABC subunit B [Haliangium ochraceum DSM 14365]
 gi|262076686|gb|ACY12655.1| excinuclease ABC, B subunit [Haliangium ochraceum DSM 14365]
          Length = 672

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/670 (55%), Positives = 483/670 (72%), Gaps = 8/670 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + P+GDQP AI QL++G+   ++ Q+LLG+TGSGKTF++A VI    RPA++
Sbjct: 4   RLFEIVSPFTPTGDQPEAIRQLIEGLGRGDRHQVLLGITGSGKTFSVANVIAETGRPALI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNKILAAQLY EFK  FP +AV YFVSYYDYYQPEAYVP TDTYIEK+S INE+IDRM
Sbjct: 64  IAPNKILAAQLYGEFKELFPKHAVHYFVSYYDYYQPEAYVPTTDTYIEKDSLINEEIDRM 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R D I+V+SVSCIYGIG+ E Y+ M   ++ G  V + ++L  LV+ QY+
Sbjct: 124 RHAATYALLSRQDVIIVASVSCIYGIGAREMYASMTCDIESGTEVARDDVLRRLVELQYE 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RGTFRV GD +E+FP++  D A R+  +G+D+E ISE  PL G+  R++  + 
Sbjct: 184 RNDVDFHRGTFRVRGDVVEVFPAYEADTAIRIEWWGDDVESISEIDPLRGKVKRSLGHVS 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SH+VTP   L  A++ I+ EL+ RL EL ++ +L+E QRLEQR  YDLE LE  G 
Sbjct: 244 IFPASHFVTPSDQLRRAIEGIRVELRERLEELSQQNKLVERQRLEQRTMYDLECLEQMGF 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+LTGR+ G PPPTL +Y PE+ +LF+DESH T+PQ+  MYRGD  RK TL 
Sbjct: 304 CSGIENYSRHLTGRDSGLPPPTLIDYFPEEFILFIDESHQTVPQLQAMYRGDRSRKQTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS +DNRPLRF+E+N      I +SATP  +ELEQ QG+IVEQIIRPTGL+DP 
Sbjct: 364 DFGFRLPSAIDNRPLRFDEFNERARQYIYISATPADYELEQSQGVIVEQIIRPTGLLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    QV+D+  EI L  ++  R+L+T LTKRMAEDLTEY  + +++VRY+HS+V T
Sbjct: 424 IEVRPVGEQVDDLLSEIRLRIERRERVLVTTLTKRMAEDLTEYYADLDVKVRYLHSDVDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LERIEIIRDLR G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 484 LERIEIIRDLRRGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTRSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN +V+LYAD ITKS++ AIDET RRR  Q E+N+ H I P+S    I++ I P   
Sbjct: 544 ARNVNGRVLLYADRITKSMRDAIDETERRRALQGEYNQTHGIVPRSTTRAILD-IQPTNA 602

Query: 739 EDAATTNISIDAQQLSL-------SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           + + T     +A    +       +  + +  ++ LR +M  AA  L+FE AA++RD  +
Sbjct: 603 DGSLTRAPLTEAVPTDVLDELSVDNAAELRKAIEKLRGEMRAAAAELDFERAAKLRDRAR 662

Query: 792 RLKSSPYFQG 801
            L+S     G
Sbjct: 663 ELESLELAVG 672


>gi|213023392|ref|ZP_03337839.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 648

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/646 (56%), Positives = 460/646 (71%), Gaps = 8/646 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----- 733
           ARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++     
Sbjct: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602

Query: 734 ---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
                   +    +       +L ++ K  +  +  L +QM   A 
Sbjct: 603 IAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEEQMMQHAQ 648


>gi|150019672|ref|YP_001311926.1| excinuclease ABC subunit B [Clostridium beijerinckii NCIMB 8052]
 gi|189037959|sp|A6M2Z0|UVRB_CLOB8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|149906137|gb|ABR36970.1| excinuclease ABC, B subunit [Clostridium beijerinckii NCIMB 8052]
          Length = 657

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/657 (53%), Positives = 471/657 (71%), Gaps = 3/657 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++Q+ + P+GDQP AI +L+  I S  + Q LLGVTGSGKTFTMA VIE +QRP I
Sbjct: 1   MGEFKIQSRFKPTGDQPQAIDKLVNSIKSNNRAQTLLGVTGSGKTFTMANVIEKLQRPTI 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL SEFK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID+
Sbjct: 61  ILAHNKTLAAQLCSEFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G+ + Y ++ + L+ G   E+ E++  L++ QY
Sbjct: 121 LRHSATSALFERRDVIIVASVSCIYGLGNPDEYKKLTISLRTGMEKERDEVIKKLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GDS++I P+   +   R+  FG++I+ I EF  LTG  +     +
Sbjct: 181 ERNDIDFSRGTFRVRGDSLDIIPASYSNKGIRIEFFGDEIDRIREFDVLTGSILGERNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I   SH+ T R T++ A+  I+ EL+ RL EL  + +LLEAQRL QR  +D+EM++  G
Sbjct: 241 AITPASHFATSRETVDKAIGIIEGELEERLRELNAQDKLLEAQRLRQRTNFDIEMIKEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L GR  G PP TL +Y PED L+F+DESHVT+PQ+  MY GD  RK TL
Sbjct: 301 YCSGIENYSRILDGRASGTPPKTLIDYFPEDFLMFIDESHVTLPQVRAMYAGDRSRKNTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLP   DNRPL+FEE+       + VSATP ++E++  +  I EQIIRPTGL+DP
Sbjct: 361 VDYGFRLPCAYDNRPLKFEEFEKKINQVVFVSATPSAYEIDNSEE-IAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + IR  + Q++D+Y EIN   + G RIL+T LTKRM+EDLT+YL E  ++  YMHS++ 
Sbjct: 420 EIIIRPIKGQIDDLYGEINKTIECGFRILITTLTKRMSEDLTKYLIELGVKTTYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++IIRDLRLG++DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMKIIRDLRLGEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI+YAD ITKS+  A+ ET RRR  Q ++N++H I P ++ + + ++I+   
Sbjct: 540 AARNSESKVIMYADNITKSMDKAMKETERRRAIQKDYNERHGIVPTTIIKDVRDIIEATK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + +      +  A +  L+KK+    +K L ++M LAA NL FE AA +RD I  +K
Sbjct: 600 VAEEVEEYKA--ADKKKLTKKEKDKLIKDLTEEMLLAAKNLQFERAAELRDIINEIK 654


>gi|261350556|ref|ZP_05975973.1| excinuclease ABC subunit B [Methanobrevibacter smithii DSM 2374]
 gi|288861339|gb|EFC93637.1| excinuclease ABC subunit B [Methanobrevibacter smithii DSM 2374]
          Length = 655

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/658 (54%), Positives = 464/658 (70%), Gaps = 9/658 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P GDQP AI  L+ GI+  EK Q LLGVTGSGKTFTMA VIE +Q+P +
Sbjct: 1   MKKFKLNSPYKPLGDQPKAINSLVDGINKGEKEQTLLGVTGSGKTFTMANVIEKVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+I+KESS+NE+ID 
Sbjct: 61  VISHNKTLAAQLYEEFKEFFPDNAVEYFVSYYDYYQPEAYVPRTDTFIDKESSVNEEIDI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSAT+SLL R+D IVVSSVSCIYG+GS E Y +    + +GD+ ++ +++  LV  QY
Sbjct: 121 MRHSATQSLLSRDDVIVVSSVSCIYGVGSPEDYGEFAFGIAVGDNYDRSDIIRKLVFMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RG FRV GD IEI P H      RV +FG++I+ IS    +TG+K  +++  
Sbjct: 181 ERNDIEFARGHFRVRGDVIEINPVHGTP-PVRVELFGDEIDAISLIDKVTGKKTESLKRY 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+   H+V  +  ++TA++ I +EL  RL E     +LLEAQRLEQR  +D+EML+  G
Sbjct: 240 MIFPAKHFVVGQDKMDTAIRNISDELDERLNEFNLSNKLLEAQRLEQRTRFDIEMLQEMG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYS +L+GR  GE P +L +Y PED L  +DESHVT+PQI GMY GD  RK TL
Sbjct: 300 YCPGVENYSMHLSGRKWGEKPYSLLKYFPEDYLTIIDESHVTLPQIRGMYNGDRARKETL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  +NRPLRF+E+       I VSATPG++EL +    IVEQIIRPTGLVDP
Sbjct: 360 VEHGFRLPSAKENRPLRFDEFESSINQIIYVSATPGAYELSRSSN-IVEQIIRPTGLVDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V IR  + QVED+  E+   A++  R+L+T LTK+MAEDLT+Y  +  ++VRYMHSE+ 
Sbjct: 419 EVIIRPVKGQVEDLLGEVKKRAKKDERVLVTTLTKKMAEDLTDYYAKIGVKVRYMHSEID 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERI+I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR++TSLIQTIGR
Sbjct: 479 TLERIDIVDDLRRGTFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNETSLIQTIGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N +VI+Y D +T S++ A   T++RR+ Q+++N+KH I P++ K  + +    + 
Sbjct: 539 AARNINGQVIMYVDEMTDSVKNATAITSKRRKIQIKYNEKHGIVPKTTKRALKDK-KVVE 597

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             D   T+IS       + K + +  +  L   M  AA  L+FE AA +RD+I  LK 
Sbjct: 598 DLDIEGTDIS------KIPKDELRLLISDLENDMKEAAAKLDFERAASLRDQIATLKG 649


>gi|312873113|ref|ZP_07733172.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|311091346|gb|EFQ49731.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 2062A-h1]
          Length = 665

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/664 (49%), Positives = 459/664 (69%), Gaps = 3/664 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +    F++ + + P+GDQ  AI QL        K Q+L G TG+GKTFTMA +I  + 
Sbjct: 3   RKQKNKRFELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLN 62

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P +V++ NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN+
Sbjct: 63  KPTLVISHNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAIND 122

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +ID++RH+ T +L++R D IVV+SVSCI+G+G    Y++ ++ L +G+  E+  LL  LV
Sbjct: 123 EIDQLRHATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLV 182

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R D+ + RG FRV GD +EIFP+   +  +RV  FG++I++I E   LTG+ +  
Sbjct: 183 NIQYDRNDLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGK 242

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            E I ++  +H++T    +  A+  IK+EL +++   + +G+LLEAQR++QR  YD+EM+
Sbjct: 243 CEQISLFPATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMM 302

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           +  G    IENYSR++  R  GEPP TL ++ P+D L+ +DESH T+P++  MY GD  R
Sbjct: 303 QEVGYTNGIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL +YGFRLPS +DNRPL+  E+       + VSATPG +EL +    +VEQIIRPTG
Sbjct: 363 KQTLIDYGFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRT-DKVVEQIIRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VE+R    Q++D+  EIN+  ++  R+ +T LTK+M+EDLT+YL E  I+V+Y+H
Sbjct: 422 LLDPIVEVRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+KTLER++IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLRS   L+Q
Sbjct: 482 SEIKTLERMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            +GRAARN N KVI+YAD IT S+Q AID T RRR  Q+  N+KH+I P+++ + I ++I
Sbjct: 542 MMGRAARNENGKVIMYADHITDSMQAAIDVTERRRHIQMLFNQKHHIIPKTIVKPIRDII 601

Query: 734 DPILLEDAATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                 D    +I+   D     LS K+ +  + +L +QM +AA  L+FE AA +RD I 
Sbjct: 602 SHTKDVDQKDKHINDFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAII 661

Query: 792 RLKS 795
            LK 
Sbjct: 662 DLKK 665


>gi|319789529|ref|YP_004151162.1| excinuclease ABC, B subunit [Thermovibrio ammonificans HB-1]
 gi|317114031|gb|ADU96521.1| excinuclease ABC, B subunit [Thermovibrio ammonificans HB-1]
          Length = 663

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/656 (52%), Positives = 464/656 (70%), Gaps = 1/656 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + P GDQP AI  L +G+    K Q LLG+TGSGKT+T+AKVIE +Q+P +V
Sbjct: 3   RRFKVVSPFKPRGDQPKAIKALSEGVKEGLKYQTLLGITGSGKTYTIAKVIEEVQKPTLV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           ++ NK+LAAQLY E KNFFP NAVEYF+SYYDYYQPEAY+P  D YIEK+ SIN  I+RM
Sbjct: 63  ISHNKVLAAQLYHELKNFFPENAVEYFISYYDYYQPEAYIPSRDLYIEKDCSINPVIERM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSAT SLL R D IVV+SVSCIYG+GS E Y ++ ++ ++G+ VE++E++  LV   Y+
Sbjct: 123 RHSATVSLLTRPDTIVVASVSCIYGLGSPEHYKKLALRFEVGEIVEREEVIRKLVSLGYE 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D  +  G F+V GD I+I+P+  E+   RV +FG++++ I+       + ++ + T  
Sbjct: 183 RNDFEVRPGIFKVRGDVIDIYPADTEEHFIRVELFGDEVDSITMLTYFNHETVKELNTYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHY TP   +  A++ I+EEL+ RL     +G+ LEA+RLEQR  YD+E+L   G 
Sbjct: 243 VYPASHYATPHSRIVRAVRSIEEELQERLQYFLSQGKELEARRLEQRTRYDMELLLEIGH 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L GR PGEPP TL +Y P+D L+ VDESHVTIPQI  MYRGD  RK  L 
Sbjct: 303 CKGIENYSRHLEGRKPGEPPFTLLDYFPDDFLVIVDESHVTIPQIKAMYRGDRARKFNLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPS  DNRPL FEE+    P  I VSATPG +ELE  +  +VEQIIRPTGL+DP 
Sbjct: 363 EHGFRLPSAYDNRPLTFEEFLKRVPQAIFVSATPGPFELEVSE-RVVEQIIRPTGLLDPE 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R  + Q++ +  +I    ++  R+L+T LTK+ AE+LT YL E+ ++ +Y+HSE+ +
Sbjct: 422 VEVRPTQGQIDYLLSQIRERVKRNERVLITTLTKKSAEELTNYLLEKGVKAKYLHSEIDS 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIR LR G+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS TSLIQT+GRA
Sbjct: 482 VERVEIIRGLRQGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTMGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KVIL+AD +T S++ AI+ET RRR+ Q  +N++HNI PQ+VK ++   I     
Sbjct: 542 ARNVNGKVILFADRVTPSMKRAIEETQRRRKIQEAYNREHNITPQTVKRELEPSILEDAG 601

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             A         +++  ++++    ++ L K+M  AA N  FE AA +RD+I+ L+
Sbjct: 602 LSALERIKRKGIEEVPKNEEELFELIEKLEKEMKEAAKNWEFERAAELRDKIRELR 657


>gi|256750636|ref|ZP_05491522.1| excinuclease ABC, B subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750476|gb|EEU63494.1| excinuclease ABC, B subunit [Thermoanaerobacter ethanolicus CCSD1]
          Length = 623

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/622 (55%), Positives = 454/622 (72%), Gaps = 3/622 (0%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGSGKTFTMA +I+ + RP +V+A NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPE
Sbjct: 1   MTGSGKTFTMANIIQKLNRPTLVIAHNKTLAAQLYSEFKEFFPDNAVEYFVSYYDYYQPE 60

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AY+P+TDTYIEK++SINE+ID++RHSAT +L ER D I+V+SVSCIYG+G    Y  +++
Sbjct: 61  AYIPQTDTYIEKDASINEEIDKLRHSATAALFERRDVIIVASVSCIYGLGDPVDYENLML 120

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L+ G   ++ E++  LV  QY+R D+   RG FRV GD IEIFP+   + A RV +FG+
Sbjct: 121 SLRPGMIKDRDEIIKKLVDIQYERNDVNFTRGKFRVRGDVIEIFPASFSNKAIRVELFGD 180

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I+E   LTG+ +   + + I+  SHY T +  L  A+K I+EEL+ R  EL+  G+
Sbjct: 181 EIDRIAEIDVLTGEVLGLRKHVAIFPASHYATSKDKLERAIKSIREELEQRYKELKDAGK 240

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           ++EA+RL QR  YDLEML+  G CQ IENYSR+++GR PG PP TL +Y P+D L+F+DE
Sbjct: 241 IVEAERLRQRTNYDLEMLQEMGYCQGIENYSRHISGRPPGSPPYTLLDYFPKDFLIFIDE 300

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVTIPQI GMY GD  RK  L EYGFRLPS  DNRPL FEE+       I VSATPG +
Sbjct: 301 SHVTIPQIRGMYNGDRSRKEALVEYGFRLPSAFDNRPLTFEEFEKRINQVIFVSATPGPY 360

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           ELE  +  +VEQ+IRPTGL+DP V ++  + QV+D+  EI     +G R+L+T LTK+MA
Sbjct: 361 ELEHSEQ-VVEQLIRPTGLIDPEVIVKPVKGQVDDLIGEIRKTVDKGFRVLVTTLTKKMA 419

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL +  I+V+Y+HS+++T+ER+EIIRDLRLGKFDVL+GINLLREGLDIPE  LVA
Sbjct: 420 EDLTDYLKDMGIKVKYLHSDIETIERVEIIRDLRLGKFDVLIGINLLREGLDIPEVALVA 479

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS+TSLIQTIGRAARN   +VI+YADT+T S++ AIDET RRR+ Q+E+N
Sbjct: 480 ILDADKEGFLRSETSLIQTIGRAARNAEGRVIMYADTVTNSMKRAIDETNRRRKIQMEYN 539

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAA 775
           KKH I P++V + + +VI+   + +          +      +  K+ ++ L K+M  AA
Sbjct: 540 KKHGITPKTVIKGVRDVIEATHVAEEEQKYRRKKVKTY--DPEIIKSTIEQLEKEMKEAA 597

Query: 776 DNLNFEEAARIRDEIKRLKSSP 797
             L FE+AA++RD I  LK   
Sbjct: 598 IELQFEKAAKLRDVIFELKKQL 619


>gi|71065305|ref|YP_264032.1| excinuclease ABC subunit B [Psychrobacter arcticus 273-4]
 gi|71038290|gb|AAZ18598.1| Excinuclease ABC subunit B [Psychrobacter arcticus 273-4]
          Length = 703

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/662 (54%), Positives = 477/662 (72%), Gaps = 8/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M T++ P+GDQP AI +L+ GI+S    QLLLGVTGSGKT+TMAKVI   QRP I+MA
Sbjct: 40  FEMVTEFEPAGDQPQAIKKLVNGINSGMDEQLLLGVTGSGKTYTMAKVISETQRPTIIMA 99

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYV  +DT+IEK+S+IN+ ID+MR 
Sbjct: 100 HNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDSAINDHIDQMRL 159

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVSCIYG+G  ESY +M++ + +GD +++   +  LV+ QY R 
Sbjct: 160 SATRALLERRDAIIVASVSCIYGLGDPESYLKMLLHVVVGDKIDRTATIKRLVEMQYTRN 219

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGT+R+ G+ ++I+P+  E +A RV +F N++E+I+ F PLTG+ +R V  I IY
Sbjct: 220 ELDFGRGTYRLRGELLDIYPAESEQLAVRVHLFDNEVEKITWFDPLTGKTVRTVPRITIY 279

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  L  A   I+ EL+ RL    +  +L+EAQRL++R  YDLEM++  G C 
Sbjct: 280 PKSHYVTPRNKLEAASHTIRAELEPRLEYFRENNKLIEAQRLKERTQYDLEMIQQLGYCN 339

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS++L+GR  GE PPTLF+YIPED+LLF+DESHVT+ QI  MY+GD  RK  L  Y
Sbjct: 340 GIENYSQHLSGRPSGEAPPTLFDYIPEDALLFIDESHVTVSQIGAMYKGDRSRKENLVNY 399

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS M+NRP++FEEW  ++P TI VSATP  +ELE  +  +VEQ++RPTGL+DP +E
Sbjct: 400 GFRLPSAMNNRPMKFEEWERIKPKTIYVSATPALYELEHSEQ-VVEQVVRPTGLIDPEIE 458

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+DV  EI    ++  R+L+T LTKRM+EDLT YL E +++V Y+HS++ TLE
Sbjct: 459 IRPVLTQVDDVLSEITKRREKDERVLITTLTKRMSEDLTSYLKEYDVKVAYLHSDIDTLE 518

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G  DVLVGINLLREGLD+PE  LVAI DADKEGFLRS+ +LIQTIGRAAR
Sbjct: 519 RMQIIHELRTGVHDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERALIQTIGRAAR 578

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++N K ILYAD IT S+Q AIDET RRREKQ+  N +HNI P   +  I + ID     D
Sbjct: 579 HINGKAILYADRITNSMQKAIDETDRRREKQVAFNLEHNITPTGARRSITDKIDTGDDLD 638

Query: 741 A-------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           A         +N+      +  S       +  L K M   + +L FE+AA+ RD++  L
Sbjct: 639 ANDNQAIPVKSNLPDVDISILRSPDLLAKEINRLEKLMKQMSRDLKFEDAAKTRDKVLEL 698

Query: 794 KS 795
           K+
Sbjct: 699 KA 700


>gi|218961133|ref|YP_001740908.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Candidatus Cloacamonas acidaminovorans]
 gi|167729790|emb|CAO80702.1| excinulease of nucleotide excision repair, DNA damage recognition
           component [Candidatus Cloacamonas acidaminovorans]
          Length = 667

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/669 (50%), Positives = 453/669 (67%), Gaps = 11/669 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +DY PSGDQP AI  L+KGI   ++ Q+LLGVTGSGKTFT+A VI    RP +
Sbjct: 1   MQRFKLISDYTPSGDQPEAIEALIKGIEEGKRHQVLLGVTGSGKTFTIANVIAHFNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY E K  FP NAVEYF+SYYDYYQPEAY+P  D YIEK+SSINEQI++
Sbjct: 61  VLSHNKTLAAQLYGELKQLFPENAVEYFISYYDYYQPEAYIPGKDIYIEKDSSINEQIEK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R  AT SL+ER D I+VSSVSCIYG+G  E Y + ++ LK G  ++++EL+  L+   Y
Sbjct: 121 LRLRATMSLMERRDVIIVSSVSCIYGLGVPEEYREALISLKKGMKMDREELIHQLISAHY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI   RG FRV GD ++IFP++LE    RV  FG++I  + + +P++ Q +  VE  
Sbjct: 181 SRNDIAFERGAFRVRGDVVDIFPAYLE-HCLRVEFFGDEIYRLEKIHPISCQPLGEVEKY 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H++     L  A+  I++E+  R+    +  + +EA+RL+QR T+DLEML   G
Sbjct: 240 DVYPAIHFLMNEEKLRKALISIEQEMNERVAWFLQNQKYVEAERLKQRTTFDLEMLHELG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENY+R+LTG  PGEPP  L +Y PED L+ +DESHVTIPQ+ GM+ GD+ RK  L
Sbjct: 300 YCSGIENYTRHLTGVKPGEPPNCLLDYFPEDFLMVIDESHVTIPQVHGMFAGDYTRKKNL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPLRFEE+       I VSATP  +EL   +G IVEQ+IRPTGLVDP
Sbjct: 360 VEYGFRLPSAFDNRPLRFEEFEKFMHQVIFVSATPADYELSLTKGEIVEQVIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EI   + QV+D+  +I     +  +IL+  LTKRM+EDL+ YL    I+ RYMHS++ 
Sbjct: 420 EIEINPIKHQVDDLIAQIKERVAKKQKILVMTLTKRMSEDLSIYLNNAGIKARYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ER +IIRD RLG+FDV+VGINLLREGLD+PE  LVAILDADK GFLRS  SLIQ  GR
Sbjct: 480 SIERAKIIRDFRLGEFDVIVGINLLREGLDLPEVSLVAILDADKTGFLRSTRSLIQISGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ KVI YAD IT +I+  + ET RRR KQL +N++H I PQ++ + I +++    
Sbjct: 540 AARNVDGKVIFYADEITDAIKQTVAETNRRRAKQLAYNEEHGITPQTIYKTIDQIMQSTA 599

Query: 738 LEDAATTNISIDAQQLSLSKKK---------GKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           + +     I+  A     S K+          +  ++ L K+M+ AA NL+FE AA +RD
Sbjct: 600 IAEGYD-KIAKQATFEKPSAKEFMEYLELDNKEKIIELLTKEMNKAAANLDFEHAAELRD 658

Query: 789 EIKRLKSSP 797
           ++  L+ + 
Sbjct: 659 KLWELQQNI 667


>gi|312875110|ref|ZP_07735127.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 2053A-b]
 gi|311089400|gb|EFQ47827.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 2053A-b]
          Length = 665

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/664 (49%), Positives = 459/664 (69%), Gaps = 3/664 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +    F++ + + P+GDQ  AI QL        K Q+L G TG+GKTFTMA +I  + 
Sbjct: 3   RKQKNKRFELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLN 62

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P +V++ NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN+
Sbjct: 63  KPTLVISHNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAIND 122

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +ID++RH+ T +L++R D IVV+SVSCI+G+G    Y++ ++ L +G+  E+  LL  LV
Sbjct: 123 EIDQLRHATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLV 182

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R D+ + RG FRV GD +EIFP+   +  +RV  FG++I++I E   LTG+ +  
Sbjct: 183 NIQYDRNDLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGK 242

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            E I ++  +H++T    +  A+  IK+EL +++   + +G+LLEAQR++QR  YD+EM+
Sbjct: 243 CEQISLFPATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMM 302

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           +  G    IENYSR++  R  GEPP TL ++ P+D L+ +DESH T+P++  MY GD  R
Sbjct: 303 QEVGYTNGIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL +YGFRLPS +DNRPL+  E+       + VSATPG +EL +    +VEQIIRPTG
Sbjct: 363 KQTLIDYGFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRT-DKVVEQIIRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VE+R    Q++D+  EIN+  ++  R+ +T LTK+M+EDLT+YL E  I+V+Y+H
Sbjct: 422 LLDPIVEVRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+KTLER++IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLRS   L+Q
Sbjct: 482 SEIKTLERMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            +GRAARN N KVI+YAD IT S+Q AID T RRR  Q+  N+KH+I P+++ + I ++I
Sbjct: 542 MMGRAARNENGKVIMYADHITDSMQAAIDVTERRRNIQMLFNQKHHIIPKTIVKPIRDII 601

Query: 734 DPILLEDAATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                 D    +I+   D     LS K+ +  + +L +QM +AA  L+FE AA +RD I 
Sbjct: 602 SHTKDVDQKDKHINDFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAII 661

Query: 792 RLKS 795
            LK 
Sbjct: 662 DLKK 665


>gi|113952727|ref|YP_729312.1| excinuclease ABC subunit B [Synechococcus sp. CC9311]
 gi|123132795|sp|Q0IE10|UVRB_SYNS3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|113880078|gb|ABI45036.1| excinuclease ABC, B subunit [Synechococcus sp. CC9311]
          Length = 679

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/677 (51%), Positives = 463/677 (68%), Gaps = 16/677 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  +++   Y P GDQP AI++L++G++  E+ Q LLG TG+GKTFTMA VI    RPA+
Sbjct: 1   MPAYELSAPYTPKGDQPTAISKLVEGVNGGERYQTLLGATGTGKTFTMANVIAQTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFPHNAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPHNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V  K+G+++  +  L  LV  QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVPFKVGETLNLRGSLRDLVNNQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D    RG FRV GD +EI P++ +D   RV +FG+++E I    P TG+ +++++ I
Sbjct: 181 SRNDTEAGRGRFRVKGDVLEIGPAY-DDRLVRVELFGDEVEAIRYVDPTTGEILQSLDAI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP+  LN A+K I+ ELK RL  L  EG+LLEAQRLEQR TYDLEML+  G
Sbjct: 240 SIYPAKHFVTPKERLNDAVKAIRSELKERLEFLNGEGKLLEAQRLEQRATYDLEMLQQIG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L GR PG  P  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLAGREPGSAPECLIDYFPDDWLLIVDESHVTCSQLLAMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+      T+ VSATPG+WE+E  +G + EQ+IRPTG++DP
Sbjct: 360 IDHGFRLPSAADNRPLKSEEFWSKAKQTVFVSATPGNWEMEVSEGQVAEQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    QV+D+  EI   A +  R+L+T LTKRMAEDLT+YL E  +RVRY+HSE+ 
Sbjct: 420 LVEVRPTTGQVDDLLGEIRDRASKKQRVLVTTLTKRMAEDLTDYLAENKVRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAQRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---- 733
           AAR+V  K +LYA+T+T S+  AI+ET RRR+ Q  +N+KH I P +  +K    I    
Sbjct: 540 AARHVEGKALLYAETMTDSMAKAIEETERRRKIQHTYNEKHGITPTAAGKKASNSILSFL 599

Query: 734 -----------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                      D  L++ A     +++     L+       +  L  +M  +A  L+FEE
Sbjct: 600 ELSRKLKADGPDADLVKVAGKAVQALEEDVDGLALDALPELIDQLELKMKESAKKLDFEE 659

Query: 783 AARIRDEIKRLKSSPYF 799
           AA +RD IK+L+     
Sbjct: 660 AANLRDRIKKLRQKLVG 676


>gi|187478007|ref|YP_786031.1| excinuclease ABC subunit B [Bordetella avium 197N]
 gi|123515216|sp|Q2L244|UVRB_BORA1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|115422593|emb|CAJ49118.1| excinuclease ABC subunit B [Bordetella avium 197N]
          Length = 676

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/654 (54%), Positives = 467/654 (71%), Gaps = 2/654 (0%)

Query: 130 SINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI 189
                    + FQ+   Y P+GDQPAAI  L++G+      Q LLGVTGSGKTFTMA VI
Sbjct: 3   DPGYVEFPGSPFQLFQPYAPAGDQPAAIEGLVQGVADGLMYQTLLGVTGSGKTFTMANVI 62

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
             + RPA+V+APNK LAAQLY+E ++FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S
Sbjct: 63  ARLGRPALVLAPNKTLAAQLYAEMRDFFPKNAVEYFVSYYDYYQPEAYVPTRDLFIEKDS 122

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELL 309
           S+NE I++MR SAT+SLLER D I+V +VSCIYGIG+   Y  M++ L+ GD + ++E+L
Sbjct: 123 SVNEHIEQMRLSATKSLLERRDTIIVGTVSCIYGIGNPGDYHAMVLILRAGDRISRREVL 182

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369
           + LV  QY R D    RG FRV G++I+IFP+   ++A R+++F +++E +  F PLTG+
Sbjct: 183 ARLVAMQYTRNDADFTRGAFRVRGETIDIFPAESPELALRLTLFDDEVETLELFDPLTGK 242

Query: 370 KIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD 429
             + +    +Y  SHYVTPR T+  A++ I+EEL+ RL     EG+LLEAQR+EQR  +D
Sbjct: 243 VRQKLPRFTVYPGSHYVTPRETVLRAIETIREELRERLSTFTNEGKLLEAQRIEQRTRFD 302

Query: 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG 489
           LEML+  G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHVT+ Q+ GMYRG
Sbjct: 303 LEMLQELGFCKGIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTVGQLGGMYRG 362

Query: 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
           D  RK TL +YGFRLPS +DNRPLR EE+       + VSATP  +E +     +VEQ++
Sbjct: 363 DRARKETLVQYGFRLPSALDNRPLRLEEFEARMRQCVFVSATPADYERQHADN-VVEQVV 421

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           RPTGLVDP VE+R A TQV+D+  EI     +  R+L+T LTKRM+EDLT++L E  +RV
Sbjct: 422 RPTGLVDPEVEVRPAHTQVDDLLGEIRHRVARQERVLVTTLTKRMSEDLTDFLAEHGVRV 481

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           RY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ 
Sbjct: 482 RYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSER 541

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           SLIQTIGRAARN++   ILYAD IT S++ A+DET+RRR KQL+HN  H I  + V + +
Sbjct: 542 SLIQTIGRAARNLHGHAILYADRITDSMRRAMDETSRRRSKQLQHNADHGITARGVNKAV 601

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLS-KKKGKAHLKSLRKQMHLAADNLNFEE 782
            E+ID ++        +       +L+ +K     +K L K M   A NL FE+
Sbjct: 602 RELIDGVMAPATTHDALEDAVPLAALTDEKAMAREIKRLEKLMMDHARNLEFEQ 655


>gi|325911395|ref|ZP_08173807.1| excinuclease ABC, B subunit [Lactobacillus iners UPII 143-D]
 gi|325476745|gb|EGC79899.1| excinuclease ABC, B subunit [Lactobacillus iners UPII 143-D]
          Length = 665

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/664 (49%), Positives = 458/664 (68%), Gaps = 3/664 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +    F++ + + P+GDQ  AI QL        K Q+L G TG+GKTFTMA +I  + 
Sbjct: 3   RKQKNKRFELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLN 62

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P +V++ NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN+
Sbjct: 63  KPTLVISHNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAIND 122

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +ID++RH+ T +L++R D IVV+SVSCI+G+G    Y++ ++ L +G+  E+  LL  LV
Sbjct: 123 EIDQLRHATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLV 182

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R D+ + RG FRV GD +EIFP+   +  +RV  FG++I++I E   LTG+ +  
Sbjct: 183 NIQYDRNDLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGK 242

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            E I ++  +H++T    +  A+  IK+EL +++   + +G+LLEAQR++QR  YD+EM+
Sbjct: 243 CEQISLFPATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMM 302

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           +  G    IENYSR++  R  GEPP TL ++ P+D L+ +DESH T+P++  MY GD  R
Sbjct: 303 QEVGYTNGIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL +YGFRLPS +DNRPL+  E+       + VSATPG +EL +    +VEQIIRPTG
Sbjct: 363 KQTLIDYGFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRT-DKVVEQIIRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VE+R    Q++D+  EIN+  ++  R+ +T LTK+M+EDLT+YL E  I+V+Y+H
Sbjct: 422 LLDPIVEVRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+KTLER++IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLRS   LIQ
Sbjct: 482 SEIKTLERMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSNRPLIQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            +GRAARN N KVI+YAD IT S+Q AID T RRR  Q+  N+KH+I P+++ + I ++I
Sbjct: 542 MMGRAARNENGKVIMYADHITDSMQAAIDVTERRRRIQMLFNQKHHIIPKTIVKPIRDII 601

Query: 734 DPILLEDAATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                 D     I+   D     LS K+ +  + +L +QM +AA  L+FE AA +RD I 
Sbjct: 602 SHTKDVDQKDKQINDFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAII 661

Query: 792 RLKS 795
            LK 
Sbjct: 662 DLKK 665


>gi|146296990|ref|YP_001180761.1| excinuclease ABC subunit B [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|189037952|sp|A4XKY5|UVRB_CALS8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|145410566|gb|ABP67570.1| Excinuclease ABC subunit B [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 661

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/660 (57%), Positives = 483/660 (73%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +D+ P+GDQP AI  L +GI   EK Q LLGVTGSGKTFTMAKVIE +QRP +
Sbjct: 1   MKKFKVVSDFKPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSIN++ID+
Sbjct: 61  VLAHNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIY +GS E Y  + + L+ G   ++ E++  L++ QY
Sbjct: 121 LRHSATSALFERRDVIIVASVSCIYSLGSPEDYLNLTLSLRPGMIKDRDEVIRELIRMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RG FRV GD +EIFP+   D A RV  FG++IE I+EF  LTG+ I     +
Sbjct: 181 ERNDIDFRRGRFRVRGDVLEIFPASNTDRAIRVEFFGDEIERITEFDVLTGEVIGRRNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYVT    L  A+K I+EEL+ RL EL   G+L+EAQRLEQR  YD+EML+  G
Sbjct: 241 AIFPASHYVTTSEKLKRAIKSIEEELEQRLQELRSMGKLVEAQRLEQRTRYDIEMLQEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSR+LTGR PG PP TL +Y P+D ++F+DESHVTIPQ+  MY GD  RK  L
Sbjct: 301 FCKGIENYSRHLTGRPPGSPPYTLLDYFPKDFIMFIDESHVTIPQVRAMYNGDKARKDAL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL FEE+       I VSATPG +EL++    +VEQIIRPTGLVDP
Sbjct: 361 VEYGFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYELKKS-SRVVEQIIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+   + Q++ +  EI    ++  R+L+T LTK+MAE LTEYL +  IRVRYMHS++ 
Sbjct: 420 EIEVHPVKGQIDHLIGEIRKRVEKNQRVLITTLTKKMAESLTEYLKDVGIRVRYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ KVI+YAD ITK++Q AIDET RRR+ Q+E+N+KH I PQ+V++ I ++I+  +
Sbjct: 540 AARNVDGKVIMYADRITKAMQKAIDETNRRRKIQIEYNQKHGIVPQTVRKGIRQIIEATI 599

Query: 738 LEDAATTNISIDAQQ--LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                        +    ++SK++ + ++K L +QM   A  L FE+AA+IRD+I  LK 
Sbjct: 600 SVAEEEEKYESIEKDIVQNMSKQEIEEYIKELEQQMKRFAIELEFEKAAKIRDKIFELKK 659


>gi|154483753|ref|ZP_02026201.1| hypothetical protein EUBVEN_01457 [Eubacterium ventriosum ATCC
           27560]
 gi|149735244|gb|EDM51130.1| hypothetical protein EUBVEN_01457 [Eubacterium ventriosum ATCC
           27560]
          Length = 660

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/658 (53%), Positives = 466/658 (70%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI +L++G    ++ Q LLGVTGSGKTFTMA VIE + +P +
Sbjct: 1   MDHFELVSEYKPTGDQPQAIEELVEGFKKGKQFQTLLGVTGSGKTFTMANVIEQLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP TDTYIEK+SSIN++ID+
Sbjct: 61  IIAHNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L+ER D I++SSVSCIYG+G    Y  M+V L+     ++ E++  L++ QY
Sbjct: 121 LRHSATMALMERKDVIIISSVSCIYGLGDPIDYKNMVVSLRPNTIRDRDEIIHKLIEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFRV G+++EIFP+   D A RV  F ++IE ISE   LTGQ    +E +
Sbjct: 181 DRNDMDFKRGTFRVRGENLEIFPASYTDSAIRVEFFDDEIERISEIDALTGQIKNELEHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+ NSHYV P   +  A+K I++EL+ ++   + E +L+EAQR+ +R  +D+EML  TG
Sbjct: 241 AIFPNSHYVVPPEKMERAIKDIEKELEEQVAYFKSEDKLIEAQRIAERTNFDMEMLRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR++ G  PG  P TL EY  +D L+ VDESH+TIPQI GMY GD  RK+TL
Sbjct: 301 FCSGIENYSRHMAGLEPGATPHTLMEYFGDDFLIIVDESHITIPQIRGMYAGDQSRKSTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL FEE+  +    + VSATP  +E E   G   EQIIRPTGL+DP
Sbjct: 361 VDYGFRLPSAKDNRPLNFEEFESMIDQMMFVSATPNVYEQEHELGR-AEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++D+  EIN    +  ++L+T LTKRMAEDLT+Y+ +  IRV+Y+HS++ 
Sbjct: 420 EVEVRPVEGQIDDLITEINKEVAKKNKVLVTTLTKRMAEDLTDYMRDVGIRVKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER +IIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERTQIIRDMRLDVFDVLVGINLLREGLDIPEIALVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD IT S+  A+ ET RRRE Q ++N +H I P ++K+ + ++I    
Sbjct: 540 AARNAEGHVIMYADNITDSMDKALTETNRRREIQQKYNNEHGITPTTIKKAVRDLISISK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             D   +++  D +  S+  K+ K  ++ ++K+M  AA  L+FE A  +RD++  L+ 
Sbjct: 600 EVDRKISDVEKDPE--SMDYKELKKLIEKVKKKMERAAAELDFETAIEMRDKLAELRK 655


>gi|297198919|ref|ZP_06916316.1| excinuclease ABC, B subunit [Streptomyces sviceus ATCC 29083]
 gi|197711160|gb|EDY55194.1| excinuclease ABC, B subunit [Streptomyces sviceus ATCC 29083]
          Length = 711

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/703 (51%), Positives = 486/703 (69%), Gaps = 36/703 (5%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             +++  + +  F++ + Y PSGDQPAAIA+L K I + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVSHIERTVAPFEVVSSYQPSGDQPAAIAELAKRIEAGEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V L++GD +++ +L
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLRVGDEIDRDQL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG
Sbjct: 182 LRRFVDIQYTRNDLAFSRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I + E + ++  SHYV     +  A+  I++EL  RL ELEK+G+LLEAQRL  R TY
Sbjct: 241 EIISDDEHLYVFPASHYVAGPERMERAVNDIEKELGERLAELEKQGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML   GSC  +ENYS +  GR PG PP TL +Y P+D LL +DESHVT+PQI  MY 
Sbjct: 301 DLEMLRQIGSCSGVENYSMHFDGRLPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G +VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLKWEEFTERIGQTVYLSATPGKYELSRGDG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+
Sbjct: 420 IRPTGLVDPEVVVKPTEGQIDDLVHEIRTRTEKDERVLVTTLTKKMAEDLTDYFLELGIQ 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL R+E++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD IT +++ AIDET RRREKQ+ +NK+  I+PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADKITPAMEKAIDETNRRREKQVAYNKERGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSL----------RKQMHL----- 773
           I +++  I  ED  T  +     +     K  KA + +L          R +        
Sbjct: 600 INDIVAQIAREDVDTEQLLGSGYRQGKDGKAAKAPVPALGGKAAGTKAARGKAKETVPTD 659

Query: 774 --AAD-----------------NLNFEEAARIRDEIKRLKSSP 797
             AA+                 +L FE AAR+RDE+  +K   
Sbjct: 660 RPAAELAGQIEEMTARMRAAAADLQFEIAARLRDEVSEMKKEL 702


>gi|78211635|ref|YP_380414.1| excinuclease ABC subunit B [Synechococcus sp. CC9605]
 gi|78196094|gb|ABB33859.1| excinuclease ABC, B subunit [Synechococcus sp. CC9605]
          Length = 702

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/692 (50%), Positives = 458/692 (66%), Gaps = 17/692 (2%)

Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181
           I  P  +    + +  +  + +   Y P GDQP AI QL+KG++  E+ Q LLG TG+GK
Sbjct: 8   ILLPGDNRQPPSGTATMPAYDLTAPYSPKGDQPTAIEQLVKGVNGGERYQTLLGATGTGK 67

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
           TFTMA VI    RPA+V+A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +
Sbjct: 68  TFTMANVIAKTGRPALVLAHNKTLAAQLCNELREFFPENAVEYFISYYDYYQPEAYVPVS 127

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           DTYI K +SINE+ID +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G+
Sbjct: 128 DTYIAKTASINEEIDMLRHSATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGE 187

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
           ++  +  L  LV  QY R D  I RG FR+ GD +EI P++ ED   R+ +FG+++E I 
Sbjct: 188 TLNIRGQLRELVNNQYSRNDTEIARGRFRMKGDVLEIGPAY-EDRLVRIELFGDEVEAIR 246

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
              P TG+ +++++ + IY   H+VTP+  L++A+  I+ EL+ RL  L  EG+LLEAQR
Sbjct: 247 YVDPTTGEILQSMDAVNIYPAKHFVTPKDRLDSAISAIRSELRERLDVLNGEGKLLEAQR 306

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
           LEQR  YDLEML   G C  +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT  
Sbjct: 307 LEQRTKYDLEMLGQVGYCNGVENYARHLAGREEGTPPECLIDYFPDDWLLIVDESHVTCS 366

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           Q+  MY GD  RK  L E+GFRLPS  DNRPL+ EE+      T+ VSATPG+WE+E   
Sbjct: 367 QLQAMYNGDQARKKVLIEHGFRLPSAADNRPLKGEEFWDKAKQTVFVSATPGNWEMEVSG 426

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G + EQ+IRPTG++DP VE+R    QV+D+  EI   A +  R+L+T LTKRMAEDLT+Y
Sbjct: 427 GEVAEQVIRPTGVLDPVVEVRPTTGQVDDLLGEIRDRAAKNQRVLVTTLTKRMAEDLTDY 486

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L E ++RVRY+HSE+ ++ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADK
Sbjct: 487 LAENDVRVRYLHSEIHSIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADK 546

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN 721
           EGFLR++ SLIQTIGRAAR+V    +LYAD +T+S+  AI ET RRR  Q  +N+KH + 
Sbjct: 547 EGFLRAERSLIQTIGRAARHVEGVALLYADNMTESMAKAISETERRRAIQQAYNEKHGVV 606

Query: 722 PQSVKEKIMEVIDPILLEDAATTNISIDAQ----------------QLSLSKKKGKAHLK 765
           P +  +K    I   L           DA                    L+ +     + 
Sbjct: 607 PTAAGKKASNSILSFLELSRKLKQDGPDADLVEVVGKAAQALENDPDAGLALEALPELID 666

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            L  +M  AA  L+FEEAA +RD +K+L+   
Sbjct: 667 QLEAKMKEAAKKLDFEEAANLRDRVKQLRQKM 698


>gi|320104307|ref|YP_004179898.1| Excinuclease ABC subunit B [Isosphaera pallida ATCC 43644]
 gi|319751589|gb|ADV63349.1| Excinuclease ABC subunit B [Isosphaera pallida ATCC 43644]
          Length = 686

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/664 (51%), Positives = 470/664 (70%), Gaps = 5/664 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ + + P+GDQP AI  L+ GI S +  Q LLGVTGSGKTFTMA VI  + RPA+
Sbjct: 1   MSVFELVSPFPPAGDQPKAIEALVDGIRSGKTHQTLLGVTGSGKTFTMANVIARLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EF+ FFP NAV YFVSYYDYYQPEAY+P+ D YIEK+++IN++I+R
Sbjct: 61  VLSHNKTLAAQLYGEFREFFPRNAVRYFVSYYDYYQPEAYIPQRDIYIEKDAAINDEIER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R +AT +L+ R D +VV+SVS IYG+GS + Y +M + L +GD +++ ELL  LV  QY
Sbjct: 121 LRLAATAALVSRRDVVVVASVSSIYGLGSPDHYKRMTIHLSVGDIIDRDELLLKLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   R  FRV GD +EI+P + E++A+RV +FG+++E ++E  PLTG+ +   + +
Sbjct: 181 ERNDIAFERSKFRVRGDVVEIWPGY-EEIAYRVELFGDEVESLAEIDPLTGKTLLKKKEM 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I    HYV P   +  A+  IK EL+ RL +L+ +G+LLEAQRL  R  YDLEML   G
Sbjct: 240 LIQPAKHYVMPEEKIEAAVTSIKAELEERLKQLQDQGKLLEAQRLAARTRYDLEMLLEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+  GR PGEPP TL +Y P+D+L+F+DESHVTIPQ+ GM+ GDF RK+TL
Sbjct: 300 RCQGIENYSRHFDGRKPGEPPYTLMDYFPKDTLVFIDESHVTIPQVRGMFAGDFSRKSTL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPLRF+EW       I VSATPG +ELE+  G +VEQ+IRPTGLVDP
Sbjct: 360 VEHGFRLPSAIDNRPLRFDEWEAKLGQVIFVSATPGDYELEKSGGEVVEQVIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +  AR QV  +  E    A++G R+L+T LTKR+AEDL+ YL E  ++ +++HSE+ 
Sbjct: 420 KIRVEPARDQVPQLLKECKARAEKGERVLVTTLTKRLAEDLSRYLKEEGLKCKWLHSELD 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER+ I+R+LR G FDVLVG+NLLREGLD+PE  LV ILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 AFERVTILRELREGAFDVLVGVNLLREGLDLPEVSLVCILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR++N++V+LYAD +T S++ A+DET RRR  QL +N +H I P+++ + I   I+  +
Sbjct: 540 AARHINAEVVLYADKVTPSMKRALDETERRRGLQLAYNAEHGITPETIVKAIRRGIEEEI 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                  N     +       + + +L +L  +M  AA+ L FE AA +RD I  +K++ 
Sbjct: 600 QARTEARNAVGRDELT----DQIEDYLAALEAEMLQAAEQLEFERAAELRDRILAVKAAK 655

Query: 798 YFQG 801
              G
Sbjct: 656 EGGG 659


>gi|259501061|ref|ZP_05743963.1| excision endonuclease subunit UvrB [Lactobacillus iners DSM 13335]
 gi|302190490|ref|ZP_07266744.1| excinuclease ABC subunit B [Lactobacillus iners AB-1]
 gi|259167755|gb|EEW52250.1| excision endonuclease subunit UvrB [Lactobacillus iners DSM 13335]
          Length = 665

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/664 (49%), Positives = 458/664 (68%), Gaps = 3/664 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +    F++ + + P+GDQ  AI QL        K Q+L G TG+GKTFTMA +I  + 
Sbjct: 3   RKQKNKRFELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLN 62

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P +V++ NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN+
Sbjct: 63  KPTLVISHNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAIND 122

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +ID++RH+ T +L++R D IVV+SVSCI+G+G    Y++ ++ L +G+  E+  LL  LV
Sbjct: 123 EIDQLRHATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLV 182

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R D+ + RG FRV GD +EIFP+   +  +RV  FG++I++I E   LTG+ +  
Sbjct: 183 NIQYDRNDLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGK 242

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            E I ++  +H++T    +  A+  IK+EL +++   + +G+LLEAQR++QR  YD+EM+
Sbjct: 243 CEQISLFPATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMM 302

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           +  G    IENYSR++  R  GEPP TL ++ P+D L+ +DESH T+P++  MY GD  R
Sbjct: 303 QEVGYTNGIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL +YGFRLPS +DNRPL+  E+       + VSATPG +EL +    +VEQIIRPTG
Sbjct: 363 KQTLIDYGFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRT-DKVVEQIIRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VE+R    Q++D+  EIN+  ++  R+ +T LTK+M+EDLT+YL E  I+V+Y+H
Sbjct: 422 LLDPIVEVRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+KTLER++IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLRS   L+Q
Sbjct: 482 SEIKTLERMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            +GRAARN N KVI+YAD IT S+Q AID T RRR  Q+  N+KH+I P+++ + I ++I
Sbjct: 542 MMGRAARNENGKVIMYADHITDSMQAAIDVTERRRNIQMLFNQKHHIIPKTIVKPIRDII 601

Query: 734 DPILLEDAATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                 D     I+   D     LS K+ +  + +L +QM +AA  L+FE AA +RD I 
Sbjct: 602 SHTKDVDQKDKQINDFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAII 661

Query: 792 RLKS 795
            LK 
Sbjct: 662 DLKK 665


>gi|148238416|ref|YP_001223803.1| excinuclease ABC subunit B [Synechococcus sp. WH 7803]
 gi|189038007|sp|A5GHU1|UVRB_SYNPW RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|147846955|emb|CAK22506.1| Helicase subunit of the DNA excision repair complex [Synechococcus
           sp. WH 7803]
          Length = 678

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/678 (51%), Positives = 457/678 (67%), Gaps = 16/678 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +   Y P GDQP AI QL+ G++  E+ Q LLG TG+GKTFTMA VI    RPA+
Sbjct: 1   MPAFDLTAPYSPKGDQPTAIKQLVAGVNDGERYQTLLGATGTGKTFTMANVIAQTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G+++  +  L  LV  QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGETLNIRGQLRELVNNQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D  I RG FR+ GD +EI P++ ED   RV +FG+++E I    P TG+ ++++E+I
Sbjct: 181 SRNDTEIARGRFRMKGDVLEIGPAY-EDRLVRVELFGDEVEAIRYVDPTTGEILQSLESI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP+  L+TA++ I+ EL  RL  L  EG+LLEAQRLEQR  YDLEML   G
Sbjct: 240 NIYPAKHFVTPKDRLDTAVQAIRSELTERLDFLNTEGKLLEAQRLEQRTKYDLEMLGQVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L GR PG  P  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLAGREPGTAPECLIDYFPKDWLLIVDESHVTCSQLQAMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+      T+ VSATPG+WELE     + +Q+IRPTG++DP
Sbjct: 360 IDHGFRLPSAADNRPLKGEEFWEKAHQTVFVSATPGNWELEVSGDEVAQQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    QV+D+  EI   A +  R+L+T LTKRMAEDLT+YL E  +RVRY+HSE+ 
Sbjct: 420 IVEVRPTTGQVDDLLGEIRDRASKQQRVLVTTLTKRMAEDLTDYLAENEVRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---- 733
           AAR+V    +LYAD +T S+  AI ET RRR  Q  +N+KH I P +  +K    I    
Sbjct: 540 AARHVEGVALLYADNMTDSMAKAISETERRRTIQQAYNEKHGIVPTAAGKKASNSILSFL 599

Query: 734 -----------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                      D  L++ A+    ++D     ++       +  L  +M  AA  L+FEE
Sbjct: 600 ELSRKLKTEGPDADLVQVASKAVEALDDDADGMALDALPELIDQLEMKMKEAAKKLDFEE 659

Query: 783 AARIRDEIKRLKSSPYFQ 800
           AA +RD IK+L+     +
Sbjct: 660 AANLRDRIKQLRQKLVGK 677


>gi|163857092|ref|YP_001631390.1| excinuclease ABC subunit B [Bordetella petrii DSM 12804]
 gi|229557958|sp|A9IR19|UVRB_BORPD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|163260820|emb|CAP43122.1| excinuclease ABC subunit B [Bordetella petrii]
          Length = 675

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/644 (56%), Positives = 467/644 (72%), Gaps = 1/644 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F +   Y P+GDQPAAI  L +G+      Q LLGVTGSGKT+TMA +I  + RPA+V
Sbjct: 12  SPFHLYQPYPPAGDQPAAIEGLAQGMRDGLMYQTLLGVTGSGKTYTMANIIARLGRPALV 71

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+SSINE I++M
Sbjct: 72  LAPNKTLAAQLYAEMREFFPKNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQM 131

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+SLLER D ++V +VSCIYGIG+   Y  M++ L+ GD + ++E+L+ LV  QY 
Sbjct: 132 RLSATKSLLERRDTVIVGTVSCIYGIGNPGDYHAMVLILRAGDRISRREVLARLVAMQYT 191

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G++++IFP+   ++A R+++F ++IE +  F PLTG+  + V    
Sbjct: 192 RNDADFARGTFRVRGETLDIFPAESPELALRLTLFDDEIESLELFDPLTGRVRQKVPRFT 251

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYVTPR T+  A++ IKEEL+ RL  L  EG+L+EAQRLEQR  +DLEML+  G 
Sbjct: 252 VYPGSHYVTPRDTVLRAIETIKEELRDRLKLLTAEGKLVEAQRLEQRTRFDLEMLQELGF 311

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHVT+ Q+ GMYRGD  RK TL 
Sbjct: 312 CKGIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTMGQLGGMYRGDRARKETLV 371

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPLR EE+       + VSATP ++E E     +VEQ++RPTGLVDP 
Sbjct: 372 QYGFRLPSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHSDN-VVEQVVRPTGLVDPQ 430

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R ARTQV+D+  EI L      R+L+T LTKRMAEDLT++L E  +RVRY+HS++ T
Sbjct: 431 VEVRPARTQVDDLLGEIKLRVAAQERVLVTTLTKRMAEDLTDFLAEHGVRVRYLHSDIDT 490

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 491 VERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 550

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+N   ILYAD IT S++ A+DET RRR KQL  N +H I  + V + + E+ID I+ 
Sbjct: 551 ARNLNGHAILYADAITASMRRAMDETERRRTKQLAFNAEHGITARGVNKAVRELIDGIVA 610

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                T  S  A ++   +K     ++ L K M   A NL FE+
Sbjct: 611 PARHDTLESAIAPEVLADEKSVAREIRRLEKLMTDHARNLEFEQ 654


>gi|284049853|ref|ZP_06380063.1| excinuclease ABC subunit B [Arthrospira platensis str. Paraca]
 gi|291569150|dbj|BAI91422.1| excinuclease ABC subunit B [Arthrospira platensis NIES-39]
          Length = 665

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/666 (52%), Positives = 457/666 (68%), Gaps = 4/666 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F+++  + P+GDQP AIAQL+  I S      LLG TG+GKTFT+A  I  + RP +
Sbjct: 1   MVKFELKAPFQPTGDQPLAIAQLINSIKSGHPKTTLLGATGTGKTFTIAATIAQLGRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKTASINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y    + L++G+  +Q++LL  L   QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPTEYLNAAIPLRVGEDRDQRQLLRDLASIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D  I RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ ++++ET+
Sbjct: 181 SRNDTEITRGRFRVRGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYIDPVTGEVLQSLETL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP   L+ A   I  ELK +L ELEK G+L EAQRL+QR  YDLEML   G
Sbjct: 240 NIYPARHFVTPGDRLDAACDAIAAELKQQLAELEKAGKLWEAQRLDQRTRYDLEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR PG PP  L +Y P+D LL VDESHVT+PQI  MY GD  RK  L
Sbjct: 300 YCNGVENYSRHLAGRLPGSPPECLVDYFPDDWLLVVDESHVTVPQIRAMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+ EE+       I+VSATPG WE+ Q QG ++EQ+IRPTG+VDP
Sbjct: 360 IEHGFRLPSAADNRPLKSEEFWQKVKQCILVSATPGDWEIAQSQGQVIEQVIRPTGVVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    QV+D+  EI     +  R+L+T LTKRMAEDLTEY  +R IRVRY+HSE++
Sbjct: 420 EIFVRPTTGQVDDLIAEIKERIPRNERVLVTTLTKRMAEDLTEYFQDRGIRVRYLHSEIQ 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           +++RIEII+ L+ G+FDVL+G+NLLREGLD+P+  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIQRIEIIQSLQEGEFDVLIGVNLLREGLDLPQVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V  + ILYAD +T S+  AI ET RRR  QLE+N+K+ I P+S+ +     I   L
Sbjct: 540 AARHVRGQAILYADNMTDSMSKAIAETNRRRTIQLEYNQKYGIIPKSIVKSSSNAILAFL 599

Query: 738 LEDAATTNISID---AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  +  ID    Q   L  ++    ++ L  +M+ AA  L FEEAA+ RD I+ L+
Sbjct: 600 DVSRRLNSQQIDLACQQVDDLPLEEIPTLIEQLEVRMNEAAQQLEFEEAAKFRDRIRILR 659

Query: 795 SSPYFQ 800
                +
Sbjct: 660 DKLVGR 665


>gi|300781284|ref|ZP_07091138.1| excision endonuclease subunit UvrB [Corynebacterium genitalium ATCC
           33030]
 gi|300532991|gb|EFK54052.1| excision endonuclease subunit UvrB [Corynebacterium genitalium ATCC
           33030]
          Length = 704

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/703 (49%), Positives = 477/703 (67%), Gaps = 16/703 (2%)

Query: 116 LLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
                 + +      +    +    F++++++ PSGDQP AIA+L + + + E   +L+G
Sbjct: 3   FAAEHPVLSHSEFRPVGEVERSEKLFEVESEFEPSGDQPTAIAELDRRLRAGEPDVVLMG 62

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GK+ T A +IE  QRP +VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPE
Sbjct: 63  ATGTGKSATAAWLIEQQQRPTLVMAPNKTLAAQLATELRALLPNNAVEYFVSYYDYYQPE 122

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AY+ +TDTYIEK+SSIN+ ++R+RHSAT +LL R D +VVSSVSCIYG+G+ +SY    +
Sbjct: 123 AYIAQTDTYIEKDSSINDDVERLRHSATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSL 182

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L++G+ VE+   L  LV  QY+R D+   RGTFRV GD+++I P++ E+VA RV  FG+
Sbjct: 183 LLRVGEEVERDRFLRLLVDVQYERNDVDFKRGTFRVKGDTVDIIPAY-EEVAVRVEFFGD 241

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +++ +   +PLTG  ++  E ++I+  +HYV     +  A++ IK EL  RL ELE  G+
Sbjct: 242 EVDSLYYIHPLTGDVLQQREELRIFPATHYVATEDRMEKAIEAIKLELADRLEELENRGK 301

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRL  R  YDLEM++  G C  IENYSR++ GR PG  P TL +Y PED L  +DE
Sbjct: 302 LLEAQRLRMRTEYDLEMIQQVGFCTGIENYSRHIDGRGPGSAPATLIDYFPEDFLTIIDE 361

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVT+PQI GMY GD  RK  L E+GFRLPS +DNRPL F+E+      T+ +SATPG +
Sbjct: 362 SHVTVPQIGGMYEGDMSRKRNLVEFGFRLPSAVDNRPLTFDEFEDRVGQTVYMSATPGDY 421

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           ELE   G  VEQ+IRPTGLVDP V ++  + Q++D+  EI    ++  R+L+T LTKRMA
Sbjct: 422 ELEAAGGEFVEQVIRPTGLVDPKVTVKPTKGQIDDLIHEIRERTERDERVLVTTLTKRMA 481

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+Y  +  I+VRY+HS++ TL+R+E++R LRLG+FDVLVGINLLREGLD+PE  LVA
Sbjct: 482 EDLTDYFLDNGIQVRYLHSDIDTLQRVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVA 541

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS  SLIQTIGRAARNV+ +VI+YAD IT+S+Q AIDET RRR KQ+ +N
Sbjct: 542 ILDADKEGFLRSTKSLIQTIGRAARNVSGEVIMYADDITESMQEAIDETERRRTKQIAYN 601

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAA-------------TTNISIDAQQLSLSKKKGKA 762
           K+H I+PQ +++KI +++D +                      +       S++  + + 
Sbjct: 602 KEHGIDPQPLRKKIADILDEVYERAEDDTYGDGAKRGSSGEEAMIEGRDTSSMASDEIEK 661

Query: 763 HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
            +  L  QM  AA  L FE A R+RDEI  L+     +G+ ++
Sbjct: 662 LIADLTTQMTAAARELKFELAGRLRDEIADLRKE--LRGVKEA 702


>gi|282862026|ref|ZP_06271089.1| excinuclease ABC, B subunit [Streptomyces sp. ACTE]
 gi|282563051|gb|EFB68590.1| excinuclease ABC, B subunit [Streptomyces sp. ACTE]
          Length = 712

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/704 (50%), Positives = 481/704 (68%), Gaps = 37/704 (5%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++   + +  F++ + Y PSGDQPAAIA+L + I + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVSQIERSVAPFEVVSPYQPSGDQPAAIAELDRRIRAGEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +VQLK+GD +++ +L
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVQLKVGDEIDRDQL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V+ QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG
Sbjct: 182 LRRFVEIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I    ++ ++  SHYV     +  A+  I+ EL+ RL ELEK+G++LEAQRL  R TY
Sbjct: 241 EVISEDSSLHVFPASHYVAGPERMEKAIGGIERELEQRLAELEKQGKMLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EML   G+C  +ENYS +   R+PG  P TL +Y PED LL +DESHVT+PQI  MY 
Sbjct: 301 DIEMLRQIGTCSGVENYSMHFDDRSPGTAPNTLLDYFPEDFLLVLDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG +E+ +  G  VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLKWEEFLKRIDQTVYLSATPGKYEMSRGDG-YVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+
Sbjct: 420 IRPTGLVDPEVVVKPTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMAEDLTDYFLELGIQ 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADK+GFLRS 
Sbjct: 480 VRYLHSDVDTLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD +T ++  AIDET RRREKQ+ +N +  ++PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADQVTPAMAQAIDETNRRREKQIAYNTERGVDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKK------------------------------ 758
           I +++  I  E+  T  +     + +   K                              
Sbjct: 600 INDIVASIAREEVDTEQLLGTGYRQTKGAKTPVPTLGGKTVPGGGATAREKAKGEPVVAT 659

Query: 759 -----KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                +    ++ +  +M  AA +L FE AAR+RDE+  LK   
Sbjct: 660 DRPAAELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELKKEL 703


>gi|332638909|ref|ZP_08417772.1| excinuclease ABC subunit B [Weissella cibaria KACC 11862]
          Length = 670

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/660 (50%), Positives = 467/660 (70%), Gaps = 2/660 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D   +++ + Y P+GDQP AI +L+ G+ +  K Q+LLG TG+GKTFT++ VI    +P 
Sbjct: 6   DSHEYEVVSKYEPTGDQPTAIDKLVTGLKNGVKEQILLGATGTGKTFTISNVIAQANKPV 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V++ NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++ID
Sbjct: 66  LVLSHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEID 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++R+SAT SLL RND IVV+SVS I+G+GS E Y+  ++ +++GD +E+ +L+  LV  Q
Sbjct: 126 KLRNSATASLLARNDTIVVASVSSIFGLGSPEQYNDHVINVRVGDVIERNDLMRRLVDIQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           ++R DI   RG FR  GD +E+FP+  +  A R+  FG++++ I E   LTG+   +++ 
Sbjct: 186 FQRNDIDFQRGRFRARGDVLEVFPASSDAKALRIEFFGDEVDRIREVDSLTGEVTADLDL 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             I+  +H++T     + A+K I+ EL  +L   E+EG+LLEAQRL+QR  YD+EM+   
Sbjct: 246 ATIFPATHFMTNDAIRDRALKTIQAELDAQLKVFEEEGKLLEAQRLKQRTEYDIEMIREM 305

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G    IENYSR++ GR PGEPP TL ++ P+D L+ VDESHVT+PQ+ GMY+GD  RK T
Sbjct: 306 GFTSGIENYSRHMDGRAPGEPPFTLLDFFPDDFLIVVDESHVTMPQVRGMYKGDRARKET 365

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ-CQGIIVEQIIRPTGLV 555
           L ++GFRLPS +DNRPLR EE+       I +SATPG +E  +     + +QIIRPTGL+
Sbjct: 366 LIDFGFRLPSALDNRPLRLEEFEEHVNQIIYMSATPGDYEEARVSHDDVAQQIIRPTGLL 425

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +E+R    Q++D+  EIN    +  R+ +T LTK+MAEDLT+YL +  ++V+Y+HS+
Sbjct: 426 DPEIEVRPVMGQIDDLLGEINERTAKDERVFVTTLTKKMAEDLTDYLEDVGVKVKYLHSD 485

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KTLER EIIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLR+  SLIQTI
Sbjct: 486 IKTLERTEIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNTRSLIQTI 545

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID- 734
           GRAARN N  VI+YAD IT S+Q A++ET RRR  Q+ +N++H+I P ++K++I  +I  
Sbjct: 546 GRAARNENGHVIMYADNITGSMQAAMEETARRRTIQMSYNQEHDITPHTIKKEIRGLIAV 605

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                +   +    +     +++   +A + +L  QM  AA  L+FEEAA +RD +  LK
Sbjct: 606 SHDTTETNESTSFTEVAFKDMARPDQEAMIANLEDQMRAAAKRLDFEEAASLRDAVMELK 665


>gi|163752829|ref|ZP_02159953.1| excinuclease ABC subunit B [Kordia algicida OT-1]
 gi|161326561|gb|EDP97886.1| excinuclease ABC subunit B [Kordia algicida OT-1]
          Length = 662

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/661 (51%), Positives = 463/661 (70%), Gaps = 5/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+GDQP AI QL+ GI + E+ Q LLGVTGSGKTFT+A VIE +++P +++A
Sbjct: 3   FKIISDFSPTGDQPQAIEQLVSGIKANEQYQTLLGVTGSGKTFTVANVIEKVEKPTLILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P + TYIEK+ SINE+I+++R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPTSGTYIEKDLSINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IV++SVSC+YGIG+   + + +++L+    + + +LL  LV+  Y R
Sbjct: 123 STTSSLLSGRRDVIVIASVSCLYGIGNPIEFQKNVIKLQRDQVISRTKLLHRLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +   + G+FRV GD ++I+P +  D A+R+  FG++IEEI  F P T   +     + I
Sbjct: 183 TEADFLHGSFRVKGDVVDIYPGYA-DFAFRIHFFGDEIEEIESFDPATNTVLEKYTQLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+E++  ++   ++ G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPEVLQNAIHQIQEDMVKQVDYFKEIGKHLEAKRLEERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ VDESHVTI Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGRAPGTRPFCLLDYFPDDYLMVVDESHVTISQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  ++   I VSATP  +EL +  G+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEMIQNQVIYVSATPADYELHKTDGVYVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI+   ++  R+L+T LTKRMAE+LT+YL    IR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLVEEIHQRTEKDERVLVTTLTKRMAEELTKYLSRIQIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVQIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736
           RNVN K I+YAD ITKS+Q  IDETT RREKQ+E+N +HNI P+ + + +   +   + +
Sbjct: 542 RNVNGKAIMYADKITKSMQKTIDETTYRREKQIEYNTQHNITPKGLNKSLNNALSKDESL 601

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             ED   T  + +     LSK + +  ++  RK M  AA  LNF +AA+ RDEIK L+  
Sbjct: 602 AWEDEIETKKAAEPDLEYLSKAQIEKLIREKRKAMETAAKELNFMDAAKYRDEIKLLQEK 661

Query: 797 P 797
            
Sbjct: 662 L 662


>gi|123967072|ref|YP_001012153.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9515]
 gi|123201438|gb|ABM73046.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str. MIT
           9515]
          Length = 679

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/676 (50%), Positives = 468/676 (69%), Gaps = 17/676 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  +++Q  Y P+GDQP AI +L++G++S ++ Q LLG TG+GKTFT+A VI+   RPA+
Sbjct: 1   MNNYKLQAPYEPNGDQPKAIKKLVQGVNSGKEFQTLLGATGTGKTFTIANVIQQTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID 
Sbjct: 61  ILAHNKTLAAQLCNELRQFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V+  +G+S++ +  L +LV  QY
Sbjct: 121 LRHSATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFAVGESIDLRSSLRALVDNQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ I RG FR+ GD +EI P++ ED   R+ +FG++IE I    PLTG+ + +++ +
Sbjct: 181 TRNDVEITRGRFRIKGDVLEIGPAY-EDRLIRIELFGDEIEAIRFVDPLTGEILESLDQV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+VTP+  L  A+  I+ ELK +L +   EG+LLEAQRLEQR  YDLEML   G
Sbjct: 240 SVYPAKHFVTPKERLEAAITAIRNELKEQLDKFACEGKLLEAQRLEQRTKYDLEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L GR  G PP  L +Y P D LL VDESHVT PQ+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLAGREEGTPPECLIDYFPTDWLLVVDESHVTCPQLHAMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+      T+ +SATPG WEL+QC+G  +EQ+IRPTG++DP
Sbjct: 360 IDHGFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWELDQCEGQFIEQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R +  Q++D+  EI + A++  R+L+T LTKRMAEDLT++L +  +RVRY+HSE+ 
Sbjct: 420 IIDVRPSDGQIDDLLSEIRVRAKKNQRVLVTTLTKRMAEDLTDFLSDNKVRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V    +LYAD  T+S++ AIDET RRR  Q ++N+ + I PQ   +KI   I   L
Sbjct: 540 AARHVEGVALLYADNFTQSMKRAIDETDRRRTIQKKYNQINGITPQPAGKKIENSILSFL 599

Query: 738 LED----------------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
                              +  T+  ++A+      ++    +  L  +M  AA  LNFE
Sbjct: 600 ELSRKLETGGFSKDLINVVSNKTDEILNAKDNQCLLEEMPNLIDKLENKMKEAAKELNFE 659

Query: 782 EAARIRDEIKRLKSSP 797
           EAA +RD IK+L+   
Sbjct: 660 EAANLRDRIKKLRQKL 675


>gi|293606135|ref|ZP_06688500.1| excision endonuclease subunit UvrB [Achromobacter piechaudii ATCC
           43553]
 gi|292815590|gb|EFF74706.1| excision endonuclease subunit UvrB [Achromobacter piechaudii ATCC
           43553]
          Length = 686

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/658 (54%), Positives = 462/658 (70%), Gaps = 1/658 (0%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFT 184
           P             + FQ+   Y P+GDQP AI  L +GI      Q LLGVTGSGKT+T
Sbjct: 9   PIAGAEPRFVEYPNSPFQLFQPYPPAGDQPTAIEGLTQGIEDGLMFQTLLGVTGSGKTYT 68

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           MA VI  + RPA+V+APNK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +
Sbjct: 69  MANVIAQLGRPALVLAPNKTLAAQLYAEMREFFPKNAVEYFVSYYDYYQPEAYVPTRDLF 128

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304
           IEK+SSINE I++MR SAT+SLLER D I+V +VSCIYGIG+   Y  M++ L+ GD + 
Sbjct: 129 IEKDSSINEHIEQMRLSATKSLLERRDTIIVGTVSCIYGIGNPGDYHAMVLILRSGDQIS 188

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           ++E+L+ LV  QY R D    RG FRV G++I+IFP+   ++A R+++F ++IE +  F 
Sbjct: 189 RREILARLVAMQYTRNDAEFTRGVFRVRGETIDIFPAESAELALRLTLFDDEIESLELFD 248

Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
           PLTG+  + +    +Y  SHYVTPR T+  A++ IK EL+ R+     +G L+EAQRLEQ
Sbjct: 249 PLTGRIRQKLPRFTVYPGSHYVTPRDTVLRAIETIKVELRDRVKRFVDDGHLVEAQRLEQ 308

Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484
           R  +DLEML+  G C+ IENYSR+L+G  PGEPPPTL +Y+P D+L+F+DESHVTI Q+S
Sbjct: 309 RTRFDLEMLQELGFCKGIENYSRHLSGAAPGEPPPTLIDYLPPDALMFIDESHVTIGQLS 368

Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544
            MYRGD  RK TL +YGFRLPS MDNRPL+ EE+       + VSATP ++E E     +
Sbjct: 369 AMYRGDRSRKETLVQYGFRLPSAMDNRPLKLEEFEARMRQCVFVSATPAAYEKEHADN-V 427

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           VEQ++RPTGLVDP VE+  ARTQV+D+  +I      G R+L+T LTKRMAEDLT++L E
Sbjct: 428 VEQVVRPTGLVDPLVEVLPARTQVDDLLGQIKARVSVGERVLVTTLTKRMAEDLTDFLSE 487

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
             ++VRY+HS++ T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGF
Sbjct: 488 HGVKVRYLHSDIDTVERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGF 547

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
           LRS+ SLIQTIGRAARN+N   ILYAD +T S+Q A++ET+RRR KQL+ N  + I  + 
Sbjct: 548 LRSERSLIQTIGRAARNLNGHAILYADRVTDSMQRAMEETSRRRAKQLQFNIDNGITARG 607

Query: 725 VKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
           V++ + E+ID I+         +    +    +K     LK L K M   A NL FE+
Sbjct: 608 VRKAVRELIDGIVAPVQHDALEAAIPAEFLKDEKALARELKRLEKLMMDHARNLEFEQ 665


>gi|309804718|ref|ZP_07698783.1| excinuclease ABC, B subunit [Lactobacillus iners LactinV 09V1-c]
 gi|308166110|gb|EFO68328.1| excinuclease ABC, B subunit [Lactobacillus iners LactinV 09V1-c]
          Length = 665

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/657 (50%), Positives = 456/657 (69%), Gaps = 3/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI QL        K Q+L G TG+GKTFTMA +I  + +P +V++
Sbjct: 10  FELVSKFQPAGDQKQAIDQLCDNFKQGVKEQILHGATGTGKTFTMANLIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L++R D IVV+SVSCI+G+G    Y++ ++ L +G+  E+  LL  LV  QY R 
Sbjct: 130 ATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +EIFP+   +  +RV  FG++I++I E   LTG+ +   E I ++
Sbjct: 190 DLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGKCEQISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  IK+EL +++   + +G+LLEAQR++QR  YD+EM++  G   
Sbjct: 250 PATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMMQEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++  R  GEPP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +EL +    +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRT-DKVVEQIIRPTGLLDPIVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN+  ++  R+ +T LTK+M+EDLT+YL E  I+V+Y+HSE+KTLE
Sbjct: 429 VRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLRS   L+Q +GRAAR
Sbjct: 489 RMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQMMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD IT S+Q AID T RRR  Q+  N+KH+I P+++ + I ++I      D
Sbjct: 549 NENGKVIMYADHITDSMQAAIDVTERRRHIQMLFNQKHHIIPKTIVKPIRDIISHTKDVD 608

Query: 741 AATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                I+   D     LS K+    + +L +QM +AA  L+FE AA +RD I  LK 
Sbjct: 609 QKDKQINDFADLNFDELSAKQKDQMIINLTEQMKIAAQKLDFETAATLRDAIIDLKK 665


>gi|119488976|ref|ZP_01621911.1| excinuclease ABC subunit B [Lyngbya sp. PCC 8106]
 gi|119454932|gb|EAW36075.1| excinuclease ABC subunit B [Lyngbya sp. PCC 8106]
          Length = 653

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/653 (53%), Positives = 458/653 (70%), Gaps = 6/653 (0%)

Query: 151 GDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLY 210
           GDQP AIA+L+K I +  +   LLG TG+GKTFT+A V+E + RP +V+A NK LAAQL 
Sbjct: 2   GDQPQAIAKLVKSIQAHHQFTTLLGATGTGKTFTIAAVVEKIGRPTLVLAHNKTLAAQLC 61

Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270
           +E + FFP+NAVEYF+SYYDYYQPEAY+P TDTYIEK +SIN++ID +RHSATRSL ER 
Sbjct: 62  NELREFFPNNAVEYFISYYDYYQPEAYIPVTDTYIEKTASINDEIDMLRHSATRSLFERR 121

Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
           D IVV+S+SCIYG+G    Y +  + L++G+ + Q++LL  L   QY R D  + RG FR
Sbjct: 122 DVIVVASISCIYGLGIPTEYLKAAIPLRVGEELNQRQLLRDLASVQYTRNDTELTRGRFR 181

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD +EI P++ ED   RV  FG++++ I    P+TG+ +++VE + +Y   H+VTP+ 
Sbjct: 182 LKGDVLEIGPAY-EDRIIRVEFFGDEVDAIRYIDPVTGEVLQSVEALNVYPARHFVTPQD 240

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
            L  A   I+ ELK ++  LE  G+LLEAQRL QR  YDLEML   G C  +ENYSR+L 
Sbjct: 241 RLEVACNDIEAELKQQVQALENAGKLLEAQRLNQRTRYDLEMLREVGYCNGVENYSRHLA 300

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
           GR  GE P  L +Y P+D LL +DESHVTIPQI GMY GD  RK  L E+GFRLPS  DN
Sbjct: 301 GRQAGESPECLIDYFPKDWLLVIDESHVTIPQIRGMYNGDQSRKRVLVEHGFRLPSAADN 360

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
           RPL+ EE+       I VSATPG WE+EQ QG +VEQIIRPTG+VDP + +R    Q++D
Sbjct: 361 RPLKAEEFWGKMNQCIFVSATPGDWEIEQSQGEVVEQIIRPTGVVDPEIFVRPTEGQIDD 420

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           ++ EI    ++  R+L+T LTKRMAEDLTEYL +R ++VRY+HSE+K+++RIEIIRDL+ 
Sbjct: 421 LFGEIQERVERDERVLITTLTKRMAEDLTEYLQDRGVKVRYLHSEIKSIQRIEIIRDLQQ 480

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G FDVL+G+NLLREGLD+P+  LV ILDADKEGFLR+  SLIQTIGRAARN+  + ILYA
Sbjct: 481 GVFDVLIGVNLLREGLDLPQVSLVVILDADKEGFLRATRSLIQTIGRAARNIRGQAILYA 540

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK----IMEVIDPILLEDAATTNI 746
           D +T S+  AIDET RRR  QLE+N+KH I PQ++ +K    I++ +D     +A     
Sbjct: 541 DNLTDSMIKAIDETERRRTIQLEYNEKHGIIPQTIVKKFSNAILDFLDVSRRLNAQQLEE 600

Query: 747 SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
             + Q   LS ++    +  L +QM  AA  L FEEAA++RD IK L+     
Sbjct: 601 VYE-QVDELSLEEIPNFIGQLEQQMKEAAKKLEFEEAAKLRDRIKLLRDKLVG 652


>gi|313891867|ref|ZP_07825472.1| excinuclease ABC, B subunit [Dialister microaerophilus UPII 345-E]
 gi|313119861|gb|EFR43048.1| excinuclease ABC, B subunit [Dialister microaerophilus UPII 345-E]
          Length = 700

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/662 (51%), Positives = 473/662 (71%), Gaps = 2/662 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           + +   F+++  + P GDQP A+A L+KG++     Q+LLG TG+GKTF+MAKVIE++QR
Sbjct: 10  TGEQKKFKLEAPFGPKGDQPKAVASLVKGLNEGHWAQVLLGATGTGKTFSMAKVIESVQR 69

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P ++++PNK LAAQ  SEFK+FFP+NAV YFVSYYDY+QPE+Y+P+TDTYI K+SS NE+
Sbjct: 70  PTLIISPNKTLAAQTASEFKDFFPNNAVYYFVSYYDYFQPESYIPQTDTYIAKDSSRNEE 129

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           IDR+RHSAT +L ER D I+V+SVSCIYG+G  E YS M + L+ G+ + + E++  LV 
Sbjct: 130 IDRLRHSATMALFERRDVIIVASVSCIYGLGDPEDYSTMGLSLRPGEEISRDEIIEKLVN 189

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D+   R TFRV GD++++FP+   +   R+ MFG++I+ ++EF  ++G+ +   
Sbjct: 190 MQYLRNDLNFTRDTFRVRGDTLDVFPASSNNTGVRIEMFGDEIDRLTEFDIVSGETVSER 249

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
             I I+  SHYVT    +  A++ I+EEL  RL  L ++ RLLEAQRLEQR  YDLEM++
Sbjct: 250 NHIGIFPASHYVTTSDKMKRAVQTIEEELAERLKILREQDRLLEAQRLEQRTNYDLEMMQ 309

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSR+++ R  GEPP +L +Y P+D L+ +DESHVT+PQ+  MY GD  RK
Sbjct: 310 EIGYCSGIENYSRHMSQRKAGEPPYSLLDYFPDDFLIMIDESHVTVPQLRAMYNGDRSRK 369

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS +DNRPL F+E+       I VSATPG +E+   Q  + EQIIRPTGL
Sbjct: 370 TTLVDYGFRLPSALDNRPLTFDEFTERINQVIYVSATPGPYEMG-VQTNLAEQIIRPTGL 428

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP VE+R    Q++DV  EI        R+L+T LTK+MAEDLT+YL + +I+VRY+HS
Sbjct: 429 LDPSVEVRPIEGQIDDVISEIRKRKDCNERVLITTLTKKMAEDLTDYLMDADIKVRYLHS 488

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER EIIRDLR G FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+TS+IQ 
Sbjct: 489 DIATIERAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVIILDADKEGFLRSETSMIQV 548

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN    VI+YAD IT S++ AI+ET RRRE Q ++N +HNI P ++++++ ++I+
Sbjct: 549 IGRAARNARGHVIMYADRITDSMKYAIEETERRREIQKKYNIEHNIIPHTIQKRVKDLIN 608

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              LE+ +     +++ + +LS +     +K + K M  AA+ + FEEAA  RD++  LK
Sbjct: 609 LTKLEEKS-VAYELNSDKRNLSDEDLFKQMKRVEKDMKKAAELMEFEEAALWRDKLSELK 667

Query: 795 SS 796
             
Sbjct: 668 QE 669


>gi|226306795|ref|YP_002766755.1| UvrABC system protein B [Rhodococcus erythropolis PR4]
 gi|226185912|dbj|BAH34016.1| UvrABC system protein B [Rhodococcus erythropolis PR4]
          Length = 720

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/718 (50%), Positives = 482/718 (67%), Gaps = 32/718 (4%)

Query: 117 LKNGKIWTPHRSWSI-NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
             +      H  +    +  +    F++ + Y P+GDQPAAIA+L K I+  EK  +LLG
Sbjct: 3   FASEHPVVAHSEFRPVGDIERSDARFEVVSPYEPAGDQPAAIAELEKRINEGEKDVVLLG 62

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GK+ T A +IE +QRPA+VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPE
Sbjct: 63  ATGTGKSATTAWLIEKLQRPALVMAPNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPE 122

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AY+ +TDTYIEK+SS+N+ ++R+RHSAT SLL R D +VV+SVSCIYG+G+ +SY    +
Sbjct: 123 AYIAQTDTYIEKDSSVNDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSI 182

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
           QL +G  V +   L  LV  QY R D+   RG+FRV GD++EI PS+ E++A R+  FG+
Sbjct: 183 QLDVGVEVPRDAFLRLLVDVQYNRNDMAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGD 241

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +IE +   +PLTG  +R V+T++I+  +HYV     +  A K I+ EL+ RL ELE +G+
Sbjct: 242 EIEALYYLHPLTGDIVRQVDTVRIFPATHYVAGPERMERAAKDIEAELEERLAELEGKGK 301

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRL  R  YDLEM++  G C  IENYSR++ GR PG  P TL +Y PED LL +DE
Sbjct: 302 LLEAQRLRMRTQYDLEMIKQVGFCSGIENYSRHIDGRGPGTAPATLIDYFPEDFLLVIDE 361

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVT+PQI  MY GD  RK  L E+GFRLPS  DNRPL +EE++     T+ +SATPG +
Sbjct: 362 SHVTVPQIGAMYEGDMSRKRNLVEFGFRLPSATDNRPLTWEEFSKRIGQTVYLSATPGKY 421

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           EL Q  G  VEQ+IRPTGL+DP V ++  + Q++D+  EI   A++  R+L+T LTK+M+
Sbjct: 422 ELGQSGGEFVEQVIRPTGLIDPEVIVKPTKGQIDDLVHEIRERAERDERVLVTTLTKKMS 481

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL E  IRVRY+HS++ TL R+E++R LRLG++DVLVGINLLREGLD+PE  LVA
Sbjct: 482 EDLTDYLLELGIRVRYLHSDIDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVA 541

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS TSLIQTIGRAARNV+ +V +YAD IT S+  AI+ET RRREKQ+ +N
Sbjct: 542 ILDADKEGFLRSSTSLIQTIGRAARNVSGQVHMYADKITASMAQAIEETERRREKQVAYN 601

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTN----------------------------IS 747
           +K  ++PQ +++KI +++D +  E   T                              + 
Sbjct: 602 EKMGVDPQPLRKKIADILDQVYEEAEDTAASVDVGGSGRNATRGRRAQGEAGRAVSAGVY 661

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
                 S+ + +    +K L  QM  AA +L FE A R+RDEI  LK     +G+D +
Sbjct: 662 EGRDTKSMPRAELADLVKELTDQMMNAARDLQFELAGRLRDEISDLKKE--LRGMDAA 717


>gi|213962077|ref|ZP_03390342.1| excinuclease ABC, B subunit [Capnocytophaga sputigena Capno]
 gi|213955430|gb|EEB66747.1| excinuclease ABC, B subunit [Capnocytophaga sputigena Capno]
          Length = 665

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/660 (52%), Positives = 468/660 (70%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +D+ P+GDQP AI QL+KGI   +K Q+LLGVTGSGKTFT+A V+E +QRP +V+A
Sbjct: 3   FNIVSDFAPTGDQPQAIDQLVKGIERDDKYQVLLGVTGSGKTFTIANVVERIQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P T TYIEK+ SIN++I+++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYIPTTGTYIEKDLSINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T +LL  R D +VV+SVSC+YGIG+   + + ++ +K GD + + +L+  LV+  Y R
Sbjct: 123 STTSALLSGRRDVLVVASVSCLYGIGNPVEFQKNVITIKQGDILPRTKLMHRLVQSLYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                  G FR+ GD +++FP + +D A+R+  FG++IEEI +F P T Q +   E++ I
Sbjct: 183 TTAEFRHGNFRIKGDVLDVFPGY-DDNAFRIHFFGDEIEEIEQFDPTTNQVLDRYESLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+++L  ++   E  G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDILQKAIWNIQQDLMKQVEFFEASGKALEAKRLKERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ +DESHVT+ Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLIDYFPDDFLMVIDESHVTVSQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL+Q QG+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQQTQGVYVEQVIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  RIL+T LTKRMAE+LT+YL    IR RY+HS+V TL
Sbjct: 422 EVRPSANQIDDLVEEIQLRTEKDERILVTTLTKRMAEELTKYLTRIGIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K I+YAD IT S+Q  ID+T  RREKQ+ +NK HNI PQ + +KI   +    + 
Sbjct: 542 RNVNGKAIMYADKITDSMQRTIDDTNYRREKQMNYNKAHNITPQPLHKKIENSLSKSPIT 601

Query: 740 D-----AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +     +     + +AQ + LS K+ +  +K  RK M  AA  L+F +AA+ RDE+KRL+
Sbjct: 602 EFHYDPSFKERTAAEAQSVYLSAKELEKKIKETRKLMETAAKELDFVKAAQYRDELKRLQ 661


>gi|309809352|ref|ZP_07703214.1| excinuclease ABC, B subunit [Lactobacillus iners SPIN 2503V10-D]
 gi|312874337|ref|ZP_07734368.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 2052A-d]
 gi|308170263|gb|EFO72294.1| excinuclease ABC, B subunit [Lactobacillus iners SPIN 2503V10-D]
 gi|311090103|gb|EFQ48516.1| excinuclease ABC, B subunit [Lactobacillus iners LEAF 2052A-d]
          Length = 665

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/657 (50%), Positives = 457/657 (69%), Gaps = 3/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQ  AI QL        K Q+L G TG+GKTFTMA +I  + +P +V++
Sbjct: 10  FELVSKFQPAGDQKQAIDQLCDNFKQGVKEQILHGATGTGKTFTMANLIAKLNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID++RH
Sbjct: 70  HNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T +L++R D IVV+SVSCI+G+G    Y++ ++ L +G+  E+  LL  LV  QY R 
Sbjct: 130 ATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLVNIQYDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +EIFP+   +  +RV  FG++I++I E   LTG+ +   E I ++
Sbjct: 190 DLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGKCEQISLF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    +  A+  IK+EL +++   + +G+LLEAQR++QR  YD+EM++  G   
Sbjct: 250 PATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMMQEVGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++  R  GEPP TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +Y
Sbjct: 310 GIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRRKQTLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+  E+       + VSATPG +EL +    +VEQIIRPTGL+DP VE
Sbjct: 370 GFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRT-DKVVEQIIRPTGLLDPIVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN+  ++  R+ +T LTK+M+EDLT+YL E  I+V+Y+HSE+KTLE
Sbjct: 429 VRPINGQIDDLIAEINIRIRRKERVFVTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++IIRDLRLGKFDVLVGINLLREG+D+PE  LVAILDADKEGFLRS   L+Q +GRAAR
Sbjct: 489 RMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQMMGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N KVI+YAD IT S+Q AID T RRR  Q+  N+KH+I P+++ + I ++I      D
Sbjct: 549 NENGKVIMYADHITDSMQAAIDVTERRRNIQMLFNQKHHIIPKTIVKPIRDIISHTKDVD 608

Query: 741 AATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                I+   D     LS K+ +  + +L +QM +AA  L+FE AA +RD I  LK 
Sbjct: 609 QKDKQINDFSDLNFDELSAKQKEQMIINLTEQMKIAAQKLDFETAATLRDAIIDLKK 665


>gi|220928838|ref|YP_002505747.1| excinuclease ABC subunit B [Clostridium cellulolyticum H10]
 gi|219999166|gb|ACL75767.1| excinuclease ABC, B subunit [Clostridium cellulolyticum H10]
          Length = 660

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/659 (53%), Positives = 479/659 (72%), Gaps = 2/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P GDQP AIA+L KGI   +K Q LLGVTGSGKT+TMAKVIE +Q+P +
Sbjct: 4   MNKFEVISEYKPMGDQPKAIAKLSKGILEGQKHQTLLGVTGSGKTYTMAKVIEQVQKPTL 63

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEFK FFP+N VEYFVSYYDYYQPEAY+P TDTYIEK+SSINE+ID+
Sbjct: 64  VIAHNKTLAAQLCSEFKEFFPNNVVEYFVSYYDYYQPEAYIPSTDTYIEKDSSINEEIDK 123

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIYG+G  E Y+ +++ L++G   ++ +++  LV  QY
Sbjct: 124 LRHSATAALFERRDVIIVASVSCIYGLGDPEDYTDLMLSLRVGMQKDRDDVIKKLVDIQY 183

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R +I   RG FRV GD +EIFP++  +   RV  FG++IE I+E   LTG+ +   + I
Sbjct: 184 ERNEIDFRRGRFRVRGDVLEIFPANSSEKVLRVEFFGDEIERITEVDYLTGEIVGTRDHI 243

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++  SHY T R  ++ AM  I++EL+ RL + + E +LLEAQRLEQR  YDLEM+   G
Sbjct: 244 AVFPASHYATSRHKMDRAMVTIEKELEERLEQFKMEDKLLEAQRLEQRTRYDLEMMSEIG 303

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+++GR  G  P TL +Y P+D LL +DESHVT+ Q+  MY GD  RK +L
Sbjct: 304 FCQGIENYSRHISGREAGSSPYTLMDYFPDDYLLVIDESHVTVSQVGAMYNGDRSRKESL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL+F E+       + VSATP ++E E     IVEQIIRPTGL+DP
Sbjct: 364 VEYGFRLPSAFDNRPLKFHEFEERVNQVVYVSATPANYEREHSTQ-IVEQIIRPTGLIDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++  + Q++D+  EIN+ A++  R+L+T LTK+MAEDLT+Y+ E +IRV+Y+HS+V 
Sbjct: 423 EITVKPVKGQIDDLIGEINMRAEKHQRVLVTTLTKKMAEDLTDYMKELDIRVKYLHSDVV 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T ER+EIIRDLRLG FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 483 TFERMEIIRDLRLGVFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN    VI+YAD IT S+Q AI ET RRR+ Q+++N+KH I P ++++ +  V++   
Sbjct: 543 AARNSEGMVIMYADNITGSMQRAISETNRRRQIQMDYNEKHGIVPTTIQKSVRNVLEATK 602

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + +      + + +   +S+++ +  +  L+K+M  AA +L FE AA +RD+I+ L+  
Sbjct: 603 VAEEEDKYYT-EKKATQMSEQELENLIAKLQKEMKQAAADLQFERAAELRDKIELLRGK 660


>gi|148272932|ref|YP_001222493.1| excinuclease ABC subunit B [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|189037957|sp|A5CRU3|UVRB_CLAM3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|147830862|emb|CAN01806.1| putative excinuclease ABC subunit B [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 688

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/677 (49%), Positives = 470/677 (69%), Gaps = 16/677 (2%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           ++ +  F++ +DY PSGDQP AIA+L   +++ E   +LLG TG+GK+ T A +IE +QR
Sbjct: 4   TRSVRPFKVVSDYSPSGDQPTAIAELAGRVNAGEPDVVLLGATGTGKSATAAWLIEKVQR 63

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++A NK LAAQL +EF+   P NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SS+N +
Sbjct: 64  PTLILAHNKTLAAQLATEFRELMPDNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSVNAE 123

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++R+RHS T SLL R D +VVS+VSCIYG+G  E Y   +V L++G  +++  L+   V 
Sbjct: 124 VERLRHSTTNSLLSRRDVVVVSTVSCIYGLGQPEQYMNAMVALQVGMQIDRDTLIRKFVS 183

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY+R D+   RG FRV GD+IEI P + E++A R+ MFG++IE + + +PLTG  +R +
Sbjct: 184 MQYQRNDVDFSRGNFRVRGDTIEIIPMY-EELAIRIEMFGDEIEALYQLHPLTGDVVRKM 242

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           +++ ++  SHYV     +  A+  I++EL+ RL  LE+EG+LLEAQRL  R  +D+EM++
Sbjct: 243 DSVSVFPGSHYVAETEVMRRAIGTIQQELEERLTVLEREGKLLEAQRLRMRTNFDIEMMQ 302

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSR++ GR+ GE P  L +Y P+D L+ +DESHVT+PQI  M+ GD  RK
Sbjct: 303 QIGFCSGIENYSRHIDGRDAGEAPHCLLDYFPDDFLVVIDESHVTVPQIGAMFEGDSSRK 362

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL E+GFRLPS +DNRPL++ E+    P T+ +SATPG +EL    G +VEQIIRPTGL
Sbjct: 363 RTLVEHGFRLPSALDNRPLKWNEFTERVPQTVYMSATPGKYELGMGDG-VVEQIIRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP + ++  + Q++D+ ++I +  ++  RIL+T LTK+MAE+LT+Y  E  +RVRY+HS
Sbjct: 422 IDPAIVVKPTKGQIDDLLEQIRIRVEKDERILVTTLTKKMAEELTDYFAEAGVRVRYLHS 481

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +V TL R+E++ +LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQT
Sbjct: 482 DVDTLRRVELLSELRAGVYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQT 541

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARNV+ +V +YAD +T S++ AI+ET RRREKQ+ +N +H I+P  ++++I ++ +
Sbjct: 542 IGRAARNVSGEVHMYADVLTDSMKRAIEETDRRREKQVAYNTEHGIDPTPLRKRIADITE 601

Query: 735 PILLEDAATTNISIDAQQLSLSK--------------KKGKAHLKSLRKQMHLAADNLNF 780
            +  E   T  +         S                + +  +  L  QM  AA  L F
Sbjct: 602 ILAREGEDTKKMLEGRGGGKRSPTPNLRREGKAAAGANELETIISDLNDQMLQAAGELKF 661

Query: 781 EEAARIRDEIKRLKSSP 797
           E AAR+RDE+  LK   
Sbjct: 662 ELAARLRDELGDLKREL 678


>gi|307153035|ref|YP_003888419.1| excinuclease ABC subunit B [Cyanothece sp. PCC 7822]
 gi|306983263|gb|ADN15144.1| excinuclease ABC, B subunit [Cyanothece sp. PCC 7822]
          Length = 665

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/666 (51%), Positives = 460/666 (69%), Gaps = 6/666 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F +Q  + P+GDQP AI QL+  I    + Q LLG TG+GKTFT+A  IE + RP +
Sbjct: 1   MSPFYLQAPFQPTGDQPQAITQLIDSITRGNRFQTLLGATGTGKTFTIAATIEKIGRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID 
Sbjct: 61  VLAHNKTLAAQLCNELRQFFPDNAVEYFISYYDYYQPEAYIPVSDTYIEKTASINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  + L++G+ + Q++LL  LV  QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGMPSEYLKAAISLQVGEEINQRQLLRDLVSVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RG FR+ GD +E+ P++ ED   RV  FG++I+ I    P+TGQ + +++ I
Sbjct: 181 SRNDLELQRGRFRLRGDVLELVPAY-EDRIIRVEFFGDEIDAIRYLDPVTGQILHSLDRI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+VTP   L  A + I+ EL+ R+ ELEK+G+LLEAQRL QR  YDLE+L   G
Sbjct: 240 NVYPARHFVTPDDQLEAACQAIELELEERVEELEKQGKLLEAQRLGQRCRYDLELLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  GEPP  L +Y P+D LL +DESHVT+PQI GMY GD  RK  L
Sbjct: 300 YCNGVENYSRHLAGRQAGEPPECLIDYFPKDWLLVIDESHVTVPQIRGMYNGDQSRKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+ EE+       + VSATPG WE+EQ +G ++EQIIRPTG++DP
Sbjct: 360 IEHGFRLPSAADNRPLKAEEFWQKVNQCVFVSATPGDWEIEQSEGRVMEQIIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    QV+D+  EI +  ++  R+L+T LTKRMAEDLTEY  ER I+V+Y+HSE+ 
Sbjct: 420 EIFVRPTEGQVDDLLGEIKVRVKRNERVLITTLTKRMAEDLTEYFQERGIKVQYLHSEIT 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEI+++LR G+FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEILQNLREGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE----KIMEVI 733
           AAR++  + ILY D +T S+  A++ET RRR  Q+ +NK+H I PQ + +     I+  +
Sbjct: 540 AARHIQGQAILYGDNLTDSMLKAMEETERRRNIQIAYNKRHGITPQPIIKRSSNAILSFL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           D     +A       + Q   L  +K    +  L  +M  AA  L FEEAA+ RD I+ L
Sbjct: 600 DISRRLNAQQLEQVYE-QADELPLEKVPELIGQLEDKMKEAAKKLEFEEAAKYRDRIQHL 658

Query: 794 KSSPYF 799
           +     
Sbjct: 659 REKLLG 664


>gi|302391081|ref|YP_003826901.1| excinuclease ABC subunit B [Acetohalobium arabaticum DSM 5501]
 gi|302203158|gb|ADL11836.1| Excinuclease ABC subunit B [Acetohalobium arabaticum DSM 5501]
          Length = 663

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/661 (54%), Positives = 471/661 (71%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +DY P GDQP AI +L  G+ +  + Q LLGVTGSGKTFTMA +IE +Q+P +
Sbjct: 1   MPQFELISDYTPCGDQPEAIEKLQAGVETGMQHQTLLGVTGSGKTFTMANLIEQVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF+ FFPHNAVEYFVSYY+YYQPEAYVP+TDTYIEK++SINE+IDR
Sbjct: 61  VIAHNKTLAAQLCSEFREFFPHNAVEYFVSYYNYYQPEAYVPQTDTYIEKDASINEEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R +AT  L ER D I+V+SVSCIYG+GS   Y  +   L+ G   E+KE++  L+  QY
Sbjct: 121 LRLAATSDLFEREDVIIVASVSCIYGLGSPTDYLDLTCSLERGAVKERKEIIRELIYIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R+D  + RG+FRV GD IEI P++ ED  +RV +FG++++ I E   +TG+    +  +
Sbjct: 181 ERKDYDLDRGSFRVRGDVIEIHPAY-EDRVYRVELFGDEVDRIREIDSITGEIKEELGGL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SH+VT    L  A+K I+ EL+ RL EL  + +LLEAQRLEQR  YDLEMLE  G
Sbjct: 240 TIYPASHFVTKEEKLKRAIKSIRAELEERLKELRSQDKLLEAQRLEQRTRYDLEMLEEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYSR+L  R PG  P TL +Y P+D LL +DESH TIPQI GMY GD  RK  L
Sbjct: 300 FCQGIENYSRHLADREPGSRPQTLIDYFPDDFLLLIDESHKTIPQIGGMYAGDRSRKEKL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL FEE+  L    + +SATPG +E E  Q  IVEQIIRPTGLVDP
Sbjct: 360 VEHGFRLPSALDNRPLEFEEFESLINQAVYISATPGPYEEEHSQQ-IVEQIIRPTGLVDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R    Q++D+  EI    ++  R+L+T LTK+MAEDLTEYL    ++VRY+HS++ 
Sbjct: 419 KIDVRPTEGQIDDLLAEIRKVVERDERVLITTLTKQMAEDLTEYLGSVGVQVRYLHSDID 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 479 TIERLEIIRDLRQGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTIGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN +VI+Y D +T S+Q AI+ET RRR  Q E N+++ I PQ++ + + EV+ P+ 
Sbjct: 539 AARNVNGRVIMYGDKMTDSMQEAIEETNRRRRIQQEFNEENEITPQTIIKPVREVLRPVD 598

Query: 738 LEDAA-----TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           +         TT  S +     ++ ++ +  +  L  +M  A+DNL FE AA+IRDEI+ 
Sbjct: 599 MVAEESNVEYTTEESDERDPEDMTAEEIEKLIIELEAEMEEASDNLEFELAAQIRDEIEE 658

Query: 793 L 793
           L
Sbjct: 659 L 659


>gi|170782354|ref|YP_001710687.1| excinuclease ABC subunit B [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|189037958|sp|B0RES6|UVRB_CLAMS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|169156923|emb|CAQ02091.1| ABC excision nuclease subunit B [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 688

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/677 (49%), Positives = 468/677 (69%), Gaps = 16/677 (2%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           ++ +  F++ +DY PSGDQP AIA+L   +++ E   +LLG TG+GK+ T A +IE +QR
Sbjct: 4   TRSVRPFKVVSDYSPSGDQPTAIAELAGRVNAGEPDVVLLGATGTGKSATAAWLIEKVQR 63

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++A NK LAAQL +EF+   P NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SS+N +
Sbjct: 64  PTLILAHNKTLAAQLATEFRELMPDNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSVNAE 123

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++R+RHS T SLL R D +VVS+VSCIYG+G  E Y   +V L++G  + +  L+   V 
Sbjct: 124 VERLRHSTTNSLLSRRDVVVVSTVSCIYGLGQPEQYMNAMVALQVGMQINRDTLIRKFVS 183

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY+R D+   RG FRV GD+IEI P + E++A R+ MFG++IE + + +PLTG  +R +
Sbjct: 184 MQYQRNDVDFSRGNFRVRGDTIEIIPMY-EELAIRIEMFGDEIEALYQLHPLTGDVVRKM 242

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           + + ++  SHYV     +  A+  I++EL+ RL  LE+EG+LLEAQRL  R  +D+EM++
Sbjct: 243 DAVSVFPGSHYVAETEVMQRAIGTIQQELEERLAVLEREGKLLEAQRLRMRTNFDIEMMQ 302

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSR++ GR+ GE P  L +Y P+D L+ +DESHVT+PQI  M+ GD  RK
Sbjct: 303 QIGFCSGIENYSRHIDGRDAGEAPHCLLDYFPDDFLVVIDESHVTVPQIGAMFEGDSSRK 362

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL E+GFRLPS +DNRPL++ E+    P T+ +SATPG +EL    G +VEQIIRPTGL
Sbjct: 363 RTLVEHGFRLPSALDNRPLKWNEFTERVPQTVYMSATPGKYELGMGDG-VVEQIIRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP + ++  + Q++D+ ++I +  ++  RIL+T LTK+MAE+LT+Y  E  +RVRY+HS
Sbjct: 422 IDPAIVVKPTKGQIDDLLEQIRIRVEKDERILVTTLTKKMAEELTDYFAEAGVRVRYLHS 481

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +V TL R+E++ +LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQT
Sbjct: 482 DVDTLRRVELLSELRAGVYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQT 541

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARNV+ +V +YAD +T S++ AI+ET RRREKQ+ +N +H I+P  ++++I ++ +
Sbjct: 542 IGRAARNVSGEVHMYADVLTDSMKRAIEETDRRREKQVAYNTEHGIDPTPLRKRIADITE 601

Query: 735 PILLEDAATTNISIDAQQLSLSK--------------KKGKAHLKSLRKQMHLAADNLNF 780
            +  E   T  +         S                + +  +  L  QM  AA  L F
Sbjct: 602 ILAREGEDTKKMLEGRGGGKRSPTPNLRREGKAAAGANELETIISDLNDQMLQAAGELKF 661

Query: 781 EEAARIRDEIKRLKSSP 797
           E AAR+RDE+  LK   
Sbjct: 662 ELAARLRDELGDLKREL 678


>gi|312127512|ref|YP_003992386.1| excinuclease ABC subunit B [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777531|gb|ADQ07017.1| excinuclease ABC, B subunit [Caldicellulosiruptor hydrothermalis
           108]
          Length = 661

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/660 (56%), Positives = 483/660 (73%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +D+ P+GDQP AI  L +GI   EK Q LLGVTGSGKTFTMAKVIE +QRP +
Sbjct: 1   MKKFKLVSDFKPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSINE+ID+
Sbjct: 61  VLAHNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIY +GS E Y  + + L+ G + ++ E++  L++ QY
Sbjct: 121 LRHSATSALFERRDVIIVASVSCIYSLGSPEDYLNLTISLRPGMTKDRDEVIRELIRMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RG FRV GD +E+FP+   D A R+  FG++IE I+EF  +TG+ I     +
Sbjct: 181 ERNDVDFRRGRFRVRGDVLEVFPASNTDRAIRIEFFGDEIERITEFDVVTGEVIGRRNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYVT    L  A+K I+EEL+ RL EL   G+L+EAQRLEQR  YD+EML+  G
Sbjct: 241 AIFPASHYVTTAEKLKRAIKSIEEELEQRLKELRSMGKLVEAQRLEQRTRYDIEMLQEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSR+LTGR PG PP TL +Y P+D ++F+DESHVTIPQ+  MY GD  RK  L
Sbjct: 301 FCKGIENYSRHLTGRPPGSPPYTLLDYFPKDFIMFIDESHVTIPQVRAMYNGDKARKDAL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL FEE+       I VSATPG +EL++    IVEQIIRPTGLVDP
Sbjct: 361 VEYGFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYELKKS-SRIVEQIIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+   + Q++ +  EI    ++  R+L+T LTK+MAE LT+YL +  IRVRYMHS++ 
Sbjct: 420 EIEVHPVQGQIDHLIGEIRKRVEKNQRVLVTTLTKKMAESLTDYLKDVGIRVRYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  KVI+YAD IT ++Q AIDET RRR+ Q+E+N+KH I PQ+V++ I ++I+  +
Sbjct: 540 AARNVYGKVIMYADRITNAMQRAIDETNRRRKIQIEYNQKHGIVPQTVRKGIRQIIEATV 599

Query: 738 LEDAATTNISIDAQQ--LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                     +  +    +++K++ + ++K L ++M   A  L FE+AA+IRD+I  LK 
Sbjct: 600 SVAEEEEKYEVVEKDIVENMTKEEIEEYIKELEQEMKKHAIELEFEKAAKIRDKIFELKK 659


>gi|229826544|ref|ZP_04452613.1| hypothetical protein GCWU000182_01919 [Abiotrophia defectiva ATCC
           49176]
 gi|229789414|gb|EEP25528.1| hypothetical protein GCWU000182_01919 [Abiotrophia defectiva ATCC
           49176]
          Length = 663

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/658 (52%), Positives = 464/658 (70%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + ++Y P+GDQP AI +L++G     + Q LLGVTGSGKTFTMA VI  +  P +
Sbjct: 1   MDHFILHSEYAPTGDQPQAIEELVEGFKEGNQFQTLLGVTGSGKTFTMANVIAKLNLPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN++ID+
Sbjct: 61  VISHNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D +VVSSVSCIYG+G    Y  M + ++ G   + +E++  L+  QY
Sbjct: 121 LRHSATAALSERKDVVVVSSVSCIYGLGDPIDYEDMTLSVRPGQIKDMEEVIRRLIDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RGTFR+ GD +EIFP    D A R+  FG++I+ ISE   LTG  +  +  +
Sbjct: 181 TRNDMDFKRGTFRIRGDVVEIFPVASTDKAVRLEFFGDEIDRISEIDVLTGTTVAELAHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+A SHYV     +  A+  ++EEL +R+   + E +L+EAQR+++R  +D+EM+  TG
Sbjct: 241 VIFAASHYVVAPEKMKEALSRLEEELDLRVKYFKSEDKLIEAQRIKERTNFDIEMMRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYS  L+GR  G  P TL +Y P++ L+ VDESH+TIPQI GMY GD  RK TL
Sbjct: 301 FCSGIENYSGPLSGRPSGSMPFTLIDYFPDEFLIIVDESHITIPQIGGMYAGDRSRKTTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL F E+       + VSATP  +E +  + +  EQIIRPTGLVDP
Sbjct: 361 VDYGFRLPSALDNRPLNFTEFENKIDRMLFVSATPSEYEAKH-ELLRTEQIIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++    Q++D+  E+    ++  ++L+T LTK+MAEDLT+Y+ E  IRVRY+HS++ 
Sbjct: 420 EIIVKPTAGQIDDLISEVKKETEKKNKVLVTTLTKKMAEDLTDYMREAGIRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRD+RL  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TLERSEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN +  VI+YADTIT S+  AI ET RRR  Q+++N++H + PQ++K+K+ ++I    
Sbjct: 540 AARNADGHVIMYADTITGSMNRAITETERRRAIQMKYNEEHGVVPQTIKKKVRDLISISK 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             +  ++ I  DA+  S+S+ + KA +K L K+M+ AA  LNFE AA++RDEI  LK 
Sbjct: 600 KVEEDSSKIIKDAE--SMSEAELKAVIKELTKKMNQAAVELNFETAAKLRDEIIELKK 655


>gi|256825138|ref|YP_003149098.1| excinuclease ABC subunit B [Kytococcus sedentarius DSM 20547]
 gi|256688531|gb|ACV06333.1| Excinuclease ABC subunit B [Kytococcus sedentarius DSM 20547]
          Length = 705

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/698 (49%), Positives = 481/698 (68%), Gaps = 31/698 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + +  + +  F++ ++Y P+GDQP AIA+L + I + E+  +LLG TG+GK+ T A +
Sbjct: 2   RPVTDLQRSVAPFEVVSEYDPAGDQPTAIAELTRRIEAGEQDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +V+L +G  ++++EL
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVRLHVGQEMDREEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD++EI P + E++A R+  FG++IE ++   PLTG
Sbjct: 182 LRKFVTMQYTRNDMAFQRGTFRVRGDTVEIIPMY-EELAVRIEFFGDEIEAVATLNPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + +R+ + + I+  +HYV     +  A+  I+ EL+ +L   E++G+LLEAQRL  R TY
Sbjct: 241 EVVRDEQEMYIFPATHYVAGPERMEKAISRIETELEQQLERFEQQGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   GSC  IENYS ++ GR PG  P  L +Y PED LL +DESHVT+PQI  M+ 
Sbjct: 301 DVEMMREMGSCNGIENYSLHIDGREPGSAPNCLLDYFPEDFLLVLDESHVTVPQIGAMFE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS MDNRPL++EE+      T+ +SATPG +EL +  G  VEQI
Sbjct: 361 GDMSRKRTLVDHGFRLPSAMDNRPLKWEEFLERIGQTVYLSATPGDYELAKSDG-YVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++  + Q++D+  EI   A++  R+L+T LTK+MAEDLT+YL ER +R
Sbjct: 420 IRPTGLVDPEIVVKPTQGQIDDLLAEIRERAERNERVLVTTLTKKMAEDLTDYLLERQVR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSEV TL RIE++++LRLG++DVLVGINLLREGLD+PE  LV+ILDADK+GFLRS 
Sbjct: 480 VRYLHSEVDTLRRIELLKELRLGEYDVLVGINLLREGLDLPEVSLVSILDADKQGFLRSN 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +V +YAD +T+S+Q AIDET RRR  Q+ HN +H I+P  +++K
Sbjct: 540 RSLIQTIGRAARNVSGQVHMYADKVTESMQYAIDETNRRRAVQIAHNTEHGIDPTPLRKK 599

Query: 729 IMEVIDPILL-----------------------------EDAATTNISIDAQQLSLSKKK 759
           I ++ + ++                              + AA   ++   +   + + +
Sbjct: 600 IGDITEMLVEMQGLAGTWEGAEDPGRPTGRRGRAEAQDADVAADLAVATGDRPTDMPRAE 659

Query: 760 GKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
               ++ L  QMH AA  L FE A R+RDEI  L+   
Sbjct: 660 LAQLIQQLSDQMHTAASQLQFELAGRLRDEIADLRKEL 697


>gi|293192757|ref|ZP_06609652.1| excinuclease ABC subunit B [Actinomyces odontolyticus F0309]
 gi|292820004|gb|EFF79002.1| excinuclease ABC subunit B [Actinomyces odontolyticus F0309]
          Length = 689

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/683 (51%), Positives = 475/683 (69%), Gaps = 22/683 (3%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           ++    F++ + Y PSGDQP AI +L   I   E+  +L+G TG+GK+ T A +IE +QR
Sbjct: 2   TRQNKPFEVISPYTPSGDQPKAIRELAARIRDGEQDAVLMGATGTGKSATTAWLIEELQR 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PA+V+ PNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++
Sbjct: 62  PALVLEPNKTLAAQLAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDE 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++R+RHSAT SLL R D +VVSSVSCIYG+G+ E Y   +++L+ G  +++  LL   V 
Sbjct: 122 VERLRHSATNSLLTRRDTVVVSSVSCIYGLGTPEEYVARMIELERGMIIDRDALLRRFVA 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D+   RGTFRV GD+IEI P + E++A R+ MFG++IE ++  +PLTG  I +V
Sbjct: 182 MQYVRNDLAFTRGTFRVRGDTIEIIPVY-EELAIRIEMFGDEIESLAVLHPLTGDVIDHV 240

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           +   ++  SHYV     +  A+  I++EL  RL     + +LLE QRL  R T+DLEML+
Sbjct: 241 DHTYLFPASHYVAGEERMKKAIASIEDELDDRLAWFRGQNKLLEEQRLRMRTTFDLEMLK 300

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             GSC  +ENYSR++ GR PG PP TL +Y P+D LL +DESHVT+PQI  M+ GD  RK
Sbjct: 301 EIGSCSGVENYSRHIDGRGPGTPPHTLLDYFPDDFLLIIDESHVTVPQIGAMFEGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS MDNRPL+++E+      T+ +SATPG +ELE+  G +VEQIIRPTGL
Sbjct: 361 RTLVDYGFRLPSAMDNRPLKWDEFTERIGQTVYLSATPGPYELERSDG-VVEQIIRPTGL 419

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           VDP V ++    Q++D+ +++ +  ++  R+L+T LTK+MAE+LT YL ER ++V Y+HS
Sbjct: 420 VDPLVVVKPTEGQIDDLLEQVRVRVERDERVLVTTLTKKMAEELTTYLAERGVKVEYLHS 479

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +V TL R+E++R+LRLG FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLIQT
Sbjct: 480 DVDTLRRVELLRELRLGTFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQT 539

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARNV+ +V +YAD +T S+  AI ET RRRE Q+ +NK+H I+PQ +++KI +V D
Sbjct: 540 IGRAARNVSGEVHMYADNMTDSMNEAISETMRRREIQIAYNKEHGIDPQPLRKKISDVTD 599

Query: 735 PILLEDAATTNISIDAQQLSLSKKK-------GKAHLKSLR-------------KQMHLA 774
            +  E   T  +     +   SK++       G+A +   R              QM +A
Sbjct: 600 MLAREQVDTQTLLEGGYRKEKSKRERSDATGGGRAVISGQRAEAELAELIEELSAQMMIA 659

Query: 775 ADNLNFEEAARIRDEIKRLKSSP 797
           A +L FE AAR+RDEI+ LK   
Sbjct: 660 AQHLQFEVAARLRDEIEDLKKEL 682


>gi|183982451|ref|YP_001850742.1| excinuclease ABC (subunit B-helicase) UvrB [Mycobacterium marinum
           M]
 gi|183175777|gb|ACC40887.1| excinuclease ABC (subunit B-helicase) UvrB [Mycobacterium marinum
           M]
          Length = 726

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/707 (50%), Positives = 479/707 (67%), Gaps = 33/707 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
            ++++  +    F++ + + P+GDQPAAI +L + I + E+  +LLG TG+GK+ T A +
Sbjct: 20  RAVDDVVRTGASFEVISPHDPAGDQPAAINELERRIRAGERDVVLLGATGTGKSATTAWL 79

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+
Sbjct: 80  IERLQRPTLVMAPNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKD 139

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN+ ++R+RHSAT +LL R D +VV+SVSCIYG+G+ +SY    V+L++G  V +  L
Sbjct: 140 SSINDDVERLRHSATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELQVGTDVPRDGL 199

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG
Sbjct: 200 LRLLVDVQYTRNDLSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTG 258

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             +R V++++I+  +HYV     +  A+  I+EEL  RL ELE  G+LLEAQRL  R  Y
Sbjct: 259 DVVRQVDSLRIFPATHYVAGPERMAQAISTIEEELAERLAELEGHGKLLEAQRLRMRTNY 318

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G C  IENYSR++ GR  G  P TL +Y PED LL +DESHVT+PQI GMY 
Sbjct: 319 DIEMMRQVGFCSGIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYE 378

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L E+GFRLPS +DNRPL++EE+      T+ +SATPG +EL Q  G  VEQ+
Sbjct: 379 GDISRKRNLVEFGFRLPSAVDNRPLQWEEFADRIGQTVYLSATPGPYELSQSGGEFVEQV 438

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++  + Q++D+  EI   A+   R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 439 IRPTGLVDPKVVVKPTKGQIDDLIGEIRQRAEADQRVLVTTLTKKMAEDLTDYLLEMGIR 498

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSEV TL R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 499 VRYLHSEVDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSA 558

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++K
Sbjct: 559 RSLIQTIGRAARNVSGEVHMYADKITDSMKEAIDETERRRAKQVAYNEANGIDPQPLRKK 618

Query: 729 IMEVIDPILLEDAATTNIS------------------------------IDAQQLSLSKK 758
           I +++D +  E   T                                        ++ + 
Sbjct: 619 IADILDQVYREADDTEAAESVPIGGSGRNSSRGRRAQGEPGRAVSAGVFEGRDTSAMPRA 678

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           +    +K L  QM +AA +L FE AAR RDEI  LK     +G+D +
Sbjct: 679 ELADLIKDLTSQMMVAARDLQFELAARFRDEIADLKKE--LRGMDAA 723


>gi|169629394|ref|YP_001703043.1| excinuclease ABC subunit B [Mycobacterium abscessus ATCC 19977]
 gi|169241361|emb|CAM62389.1| UvrABC system protein B (UvrB protein) excinuclease [Mycobacterium
           abscessus]
          Length = 719

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/704 (49%), Positives = 477/704 (67%), Gaps = 30/704 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + +  +    F++ + Y P+GDQP AIA+L + + + EK  +LLG TG+GK+ T A +
Sbjct: 16  RPVTDILRTEGRFEVVSQYEPAGDQPGAIAELERRVRAGEKDVVLLGATGTGKSATTAWL 75

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+
Sbjct: 76  IERLQRPTLVMAPNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKD 135

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN+ ++R+RHSAT +LL R D +VV+SVSCIYG+G+ +SY    VQL +G  V +  L
Sbjct: 136 SSINDDVERLRHSATSNLLSRRDVVVVASVSCIYGLGTPQSYLDRSVQLDVGLEVPRDAL 195

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R D+   RGTFRV GD++EI PS+ E++A R+  FG+++E +   +PLTG
Sbjct: 196 LRLLVDMQYNRNDMAFTRGTFRVRGDTVEIIPSY-EELAVRIEFFGDEVEALYYLHPLTG 254

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             +R   +++I+  +HYV     +  A++ I++EL+ RL ELE +G+LLEAQRL  R  Y
Sbjct: 255 DVVRQTNSLRIFPATHYVAGPERMGKALEGIEQELEERLSELEGQGKLLEAQRLRMRTNY 314

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G C  IENYSR++ GR  G PP TL +Y P+D LL +DESHVT+PQI  MY 
Sbjct: 315 DIEMMRNVGFCSGIENYSRHIDGRGAGTPPATLLDYFPDDFLLVIDESHVTVPQIGAMYE 374

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L ++GFRLPS +DNRPL +EE+      T+ +SATPG++E     G  VEQ+
Sbjct: 375 GDMSRKRNLVDFGFRLPSAVDNRPLTWEEFADRIGQTVYLSATPGNYERSAAGGEFVEQV 434

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++  + Q++D+   I    +   R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 435 IRPTGLVDPKVVVKPTKGQIDDLIASIRQRTEADERVLVTTLTKKMAEDLTDYLLEMGIR 494

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSEV TL R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 495 VRYLHSEVDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSS 554

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +V +YADT+T S++ AIDET RRR KQ+ +N+ + I+PQ +++K
Sbjct: 555 RSLIQTIGRAARNVSGEVHMYADTMTDSMKEAIDETDRRRAKQIAYNQANGIDPQPLRKK 614

Query: 729 IMEVIDPILLEDAATTNISIDA---------------------------QQLSLSKKKGK 761
           I +++D +  E   T  +++                                ++ + +  
Sbjct: 615 IADILDQVYREAEDTEEVAVGGSGRNSSRGRRAQGEPGRAVSAGVFEGRDTKTMPRAELA 674

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             +K + +QM  AA +L FE AAR RDEI  LK     +G+D +
Sbjct: 675 DLIKDMTEQMMTAARDLQFELAARFRDEIADLKKE--LRGMDAA 716


>gi|268610256|ref|ZP_06143983.1| excinuclease ABC subunit B [Ruminococcus flavefaciens FD-1]
          Length = 652

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/656 (52%), Positives = 452/656 (68%), Gaps = 6/656 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + +DY P+GDQP AI +L++G+ S +K Q+LLGVTGSGKTFTMA VI  + +P +
Sbjct: 1   MDRFVLHSDYAPAGDQPQAIDKLVQGLESGKKEQILLGVTGSGKTFTMANVIARVNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NKILAAQL SEF+ FFP NAVEYFVSYYDYYQPEAYVP TD+YIEK+SSIN++ID+
Sbjct: 61  VLAHNKILAAQLCSEFREFFPDNAVEYFVSYYDYYQPEAYVPSTDSYIEKDSSINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIY +GS E Y  M V ++ G    + +L+  LVK +Y
Sbjct: 121 LRHSATTALAERRDVIIVASVSCIYSLGSPEEYRSMCVSIRQGAEKPRDQLIDELVKIRY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   R  FRV GD +EIFP+   D A RV  FG++I+ ISE   +TG+    V   
Sbjct: 181 ERNDIAFERNRFRVHGDVVEIFPAMSSDTAVRVEYFGDEIDRISEINVVTGEVKAVVSHA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYV     L  A+  I  EL  R+   ++  +L+EAQR+EQR  YD+EML   G
Sbjct: 241 AIFPASHYVVGDDKLEAALTEIDRELAERIDYFQQNNKLIEAQRIEQRTHYDMEMLREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR L GR  G  P TL ++ PED LL VDESHVT+PQ+  MY GD  RK TL
Sbjct: 301 YCSGVENYSRVLAGRPAGSTPQTLMDHFPEDFLLIVDESHVTLPQVRAMYAGDRARKTTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS MDNRPL F+E+N      I VSATPG  E E+    IVEQ+IRPTGLVDP
Sbjct: 361 VDYGFRLPSAMDNRPLNFDEFNDHIHQAIYVSATPGQIEREKT-DTIVEQVIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++    QV+D+  EIN    +  R+L+T LTK+MAEDLT Y     ++VRY+H ++ 
Sbjct: 420 EIIVKPTTGQVDDLLSEINERTARNERVLVTTLTKKMAEDLTSYYENLGVKVRYLHHDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EII+DLR G FDVLVGINLLREGLDIPE  L+AILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMEIIKDLRNGVFDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VI+YAD++T S++ AI ET RRR  Q+ +N++H I P+++ + + +V++   
Sbjct: 540 AARNAKGQVIMYADSVTGSMERAITETERRRGLQMAYNEEHGIVPKTIIKDVRDVLEIT- 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
               +   +     +  +S    +A ++ L  +M  AA  L FE AA +RD+I+ L
Sbjct: 599 ----SKAKVEKSTAKKKMSAADKQALIEKLTAEMKNAAKMLEFEHAAYLRDKIREL 650


>gi|302528101|ref|ZP_07280443.1| excinuclease ABC, B subunit [Streptomyces sp. AA4]
 gi|302436996|gb|EFL08812.1| excinuclease ABC, B subunit [Streptomyces sp. AA4]
          Length = 727

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/706 (50%), Positives = 483/706 (68%), Gaps = 30/706 (4%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
               ++   +    F++ ++Y P+GDQPAAI +L + I + EK  +LLG TG+GK+ T A
Sbjct: 22  DFRPVSEVPRAGGRFEVVSEYQPAGDQPAAIDELERRIRAGEKDVVLLGATGTGKSATTA 81

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            +IE +QRP +VMAPNK LAAQL +E +  FPHNAVEYFVSYYDYYQPEAY+ +TDTYIE
Sbjct: 82  WLIERVQRPTLVMAPNKTLAAQLANELRELFPHNAVEYFVSYYDYYQPEAYIAQTDTYIE 141

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+SSIN+ ++R+RHSAT +LL R D IVV+SVSCIYG+G+ +SY     +L++G +VE+ 
Sbjct: 142 KDSSINDDVERLRHSATMNLLSRRDVIVVASVSCIYGLGTPQSYLDRSTKLEVGATVERD 201

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
            LL +LV  QY R DI   RGTFRV GD++EI P++ E++A RV  FG++I+++   +PL
Sbjct: 202 VLLRALVDVQYSRNDIAFARGTFRVRGDTVEIIPAY-EELAIRVEFFGDEIDKLYYLHPL 260

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG  +R V+ ++I+  +HYV     +  A++ I+ EL+ RL ELEK+G+LLEAQRL  R 
Sbjct: 261 TGDIVREVDEVRIFPATHYVAGPERMEKAIRGIEAELEERLAELEKQGKLLEAQRLRMRT 320

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
            YD+EM+   G C  IENYSR++ GR PG  P TL +Y PED LL +DESH T+PQI GM
Sbjct: 321 AYDIEMMRQVGFCSGIENYSRHIDGRGPGSAPATLIDYFPEDFLLVIDESHQTVPQIGGM 380

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           Y GD  RK  L +YGFRLPS +DNRPL +EE++     T+ +SATPG +E+ Q  G  VE
Sbjct: 381 YEGDMSRKRNLVDYGFRLPSAVDNRPLTWEEFSDRIGQTVYLSATPGPYEMGQTGGEFVE 440

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q+IRPTGLVDP V ++    Q++D+  EI   A +  R+L+T LTK+MAEDLT+YL E  
Sbjct: 441 QVIRPTGLVDPKVVVKPTEGQIDDLVHEIRERADKDERVLVTTLTKKMAEDLTDYLLELG 500

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           IRVRY+HSEV TL R+E++R LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLR
Sbjct: 501 IRVRYLHSEVDTLRRVELLRQLRAGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLR 560

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S TSLIQTIGRAARNV+ +V +YAD IT S++ AIDET RRR KQ+ +N++  ++PQ ++
Sbjct: 561 SGTSLIQTIGRAARNVSGEVHMYADKITDSMKYAIDETDRRRAKQVAYNEERGLDPQPLR 620

Query: 727 EKIMEVIDPILLEDAATTNISI---------------------------DAQQLSLSKKK 759
           +KI +++D +  E   +                                D    ++ + +
Sbjct: 621 KKIADILDRVYTEAEDSDETVAVGGSGRNSSRGKKPEQGDRVRSSGMLTDKNVSAMPRAE 680

Query: 760 GKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
               ++ +  QM  AA +L FE AAR+RDE+  LK     +G+D +
Sbjct: 681 LADLIQQMTDQMMQAARDLQFELAARLRDEVADLKKE--LRGMDAA 724


>gi|51473402|ref|YP_067159.1| excinuclease ABC subunit B [Rickettsia typhi str. Wilmington]
 gi|81826331|sp|Q68XG5|UVRB_RICTY RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|51459714|gb|AAU03677.1| excinuclease ABC subunit B [Rickettsia typhi str. Wilmington]
          Length = 662

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/661 (57%), Positives = 487/661 (73%), Gaps = 2/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + + Y P+G QP AI +++ G++S+++ Q+LLG+TGSGKTFTMA +IE   RP +
Sbjct: 1   MNNFSIISAYKPAGGQPKAIDEIIAGLNSKKRSQMLLGITGSGKTFTMANIIERTNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MA NK LAAQ+Y E K+ FP NAVEYFVSYYDYYQPEAY+ RTDT+IEK+SSINEQID 
Sbjct: 61  IMAHNKTLAAQIYLEMKSIFPKNAVEYFVSYYDYYQPEAYIVRTDTFIEKDSSINEQIDL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSATRSLLER D IV++SVSCIYG+G+ + Y QM V L++G S  + +LL+ L+  QY
Sbjct: 121 MRHSATRSLLERRDVIVIASVSCIYGLGAPDLYYQMTVHLELGQSYPRDKLLNDLINLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR DIG  RG FRV GD I+IFPSH  D AWR+S FGN++E I EF PLTG+K+  ++  
Sbjct: 181 KRNDIGFERGCFRVKGDHIDIFPSHYSDKAWRLSFFGNELEYIHEFDPLTGEKLTQLDKA 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++ NSH+V P+ T+N A+  I+ EL+  L  L+ + +L+EA+RL QR  YDLEML  TG
Sbjct: 241 MVFGNSHFVMPQKTINNAISSIEVELQKHLDVLKSQDKLIEAKRLNQRTQYDLEMLTETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC+ IENYSR+ TGRN GEPPPTLFEY+P+D+LLF+DESHV+IPQI  MY  D  RK  L
Sbjct: 301 SCKGIENYSRFFTGRNAGEPPPTLFEYLPKDALLFLDESHVSIPQIRAMYNSDRARKEVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEEW   RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP
Sbjct: 361 VEHGFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              I+ A  QVED+  EI     +GLRIL+T LTK+MAEDLT YL +   +  Y+HS + 
Sbjct: 421 ECIIKPATNQVEDLISEIQTTITKGLRILVTTLTKKMAEDLTSYLQDLQYKTYYLHSNIH 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI+RDLR G  D+LVGINLLREG+DIPECGLVAILDADKEGFLRS+ SLIQTIGR
Sbjct: 481 TLERIEILRDLRQGNIDILVGINLLREGIDIPECGLVAILDADKEGFLRSEVSLIQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   KVILYAD +TKSI  A+ ET RRR+ Q E+NKK+ I P+++   I  +    L
Sbjct: 541 AARNSRGKVILYADKMTKSIDKAVSETLRRRQIQQEYNKKYGIIPKTINSAIHTL--ESL 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            E             L  +  K K+++  L+K+M  AA NL FE+AA++R+++K L+ + 
Sbjct: 599 EEIHDNKLDKKQTNTLLNNPAKLKSYMDKLKKEMFKAASNLEFEQAAKLRNQLKTLEKAV 658

Query: 798 Y 798
            
Sbjct: 659 L 659


>gi|329121131|ref|ZP_08249762.1| excision endonuclease subunit UvrB [Dialister micraerophilus DSM
           19965]
 gi|327471293|gb|EGF16747.1| excision endonuclease subunit UvrB [Dialister micraerophilus DSM
           19965]
          Length = 707

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/662 (51%), Positives = 473/662 (71%), Gaps = 2/662 (0%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           + +   F+++  + P GDQP A+A L+KG++     Q+LLG TG+GKTF+MAKVIE++QR
Sbjct: 17  TGEQKKFKLEAPFGPKGDQPKAVASLVKGLNEGHWAQVLLGATGTGKTFSMAKVIESVQR 76

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P ++++PNK LAAQ  SEFK+FFP+NAV YFVSYYDY+QPE+Y+P+TDTYI K+SS NE+
Sbjct: 77  PTLIISPNKTLAAQTASEFKDFFPNNAVYYFVSYYDYFQPESYIPQTDTYIAKDSSRNEE 136

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           IDR+RHSAT +L ER D I+V+SVSCIYG+G  E YS M + L+ G+ V + E++  LV 
Sbjct: 137 IDRLRHSATMALFERRDVIIVASVSCIYGLGDPEDYSTMGLSLRPGEEVSRDEIIEKLVN 196

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D+   R TFRV GD++++FP+   +   R+ MFG++I+ ++EF  ++G+ +   
Sbjct: 197 MQYLRNDLNFTRDTFRVRGDTLDVFPASSNNTGVRIEMFGDEIDRLTEFDIVSGETVSER 256

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
             I I+  SHYVT    +  A++ I EEL  RL  L ++ RLLEAQRLEQR  YDLEM++
Sbjct: 257 NHIGIFPASHYVTTSDKMKRAVQTIGEELAERLKILREQDRLLEAQRLEQRTNYDLEMMQ 316

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSR+++ R  GEPP +L +Y P+D L+ +DESHVT+PQ+  MY GD  RK
Sbjct: 317 EIGYCSGIENYSRHMSQRKAGEPPYSLLDYFPDDFLIMIDESHVTVPQLRAMYNGDRSRK 376

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS +DNRPL F+E+       I VSATPG +E+   Q  + EQIIRPTGL
Sbjct: 377 ITLVDYGFRLPSALDNRPLTFDEFTERINQVIYVSATPGPYEMG-VQTNLAEQIIRPTGL 435

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP VE+R    Q++DV  EI        R+L+T LTK+MAEDLT+YL + +I+VRY+HS
Sbjct: 436 LDPSVEVRPIEGQIDDVISEIRKRKDCNERVLITTLTKKMAEDLTDYLMDADIKVRYLHS 495

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER EIIRDLR G FDVLVGINLLREGLD+PE  LV ILDADKEGFLRS+TS+IQ 
Sbjct: 496 DIATIERAEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVIILDADKEGFLRSETSMIQV 555

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN    VI+YAD+IT S++ AI+ET RRRE Q ++N +HNI P ++++++ ++I+
Sbjct: 556 IGRAARNARGHVIMYADSITDSMKYAIEETERRREIQKKYNIEHNIIPHTIQKRVKDLIN 615

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              LE+ +     +++ + +LS +     +K + K M  AA+ + FEEAA  RD++  LK
Sbjct: 616 LTKLEEKS-VAYELNSDKRNLSDEDLFKQMKRVEKDMKKAAELMEFEEAALWRDKLSELK 674

Query: 795 SS 796
             
Sbjct: 675 QE 676


>gi|33862205|ref|NP_893766.1| excinuclease ABC subunit B [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|81835535|sp|Q7UZL3|UVRB_PROMP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|33634423|emb|CAE20108.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 679

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/676 (50%), Positives = 468/676 (69%), Gaps = 17/676 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  +++Q  Y P+GDQP AI +L++G++S E+ Q LLG TG+GKTFT+A VI+   RPA+
Sbjct: 1   MNNYKLQAPYQPNGDQPKAIKKLVQGVNSGEEFQTLLGATGTGKTFTIANVIQQTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID 
Sbjct: 61  ILAHNKTLAAQLCNELRQFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V+  +G+S++ +  L +LV  QY
Sbjct: 121 LRHSATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFAVGESIDLRSSLRALVDNQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D  I RG FR+ GD +EI P++ ED   R+ +FG++IE I    PLTG+ + +++ +
Sbjct: 181 TRNDTEITRGRFRIKGDVLEIGPAY-EDRLIRIELFGDEIEAIRFVDPLTGEILESLDQV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+VTP+  L++A+  I+ ELK +L +   EG+LLEAQRLEQR  YDLEML   G
Sbjct: 240 SVYPAKHFVTPKERLDSAISAIRNELKEQLDKFAYEGKLLEAQRLEQRTKYDLEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT PQ+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLAGREEGTPPECLIDYFPKDWLLVVDESHVTCPQLHAMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+      T+ +SATPG WEL+QC+G  +EQ+IRPTG++DP
Sbjct: 360 IDHGFRLPSAADNRPLKCEEFWEKSRQTLFISATPGQWELDQCEGKFIEQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R +  Q++D+  EI + A++  R+L+T LTKRMAEDLT++L +  +RVRY+HSE+ 
Sbjct: 420 IIDVRPSDGQIDDLLSEIRVRAKKNQRVLVTTLTKRMAEDLTDFLSDNKVRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V    +LYAD  T+S++ AI ET RRR  Q ++N+ + I P+   +KI   I   L
Sbjct: 540 AARHVEGVALLYADNFTESMKRAISETDRRRTIQKKYNQINGITPKPAGKKIENSILSFL 599

Query: 738 L---------EDAATTNISIDAQQLSLSKK-------KGKAHLKSLRKQMHLAADNLNFE 781
                           NI  +     L+ K       +  + +  L  +M  AA  LNFE
Sbjct: 600 ELSRKLDTGGLSKDLINIVSNKTDDILNAKDNQCLLDEMPSLIDKLENKMKDAAKELNFE 659

Query: 782 EAARIRDEIKRLKSSP 797
           EAA +RD IK+L+   
Sbjct: 660 EAANLRDRIKKLRQKL 675


>gi|33862344|ref|NP_893904.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9313]
 gi|81834846|sp|Q7TV80|UVRB_PROMM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|33640457|emb|CAE20246.1| excinuclease ABC, subunit B [Prochlorococcus marinus str. MIT 9313]
          Length = 679

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/677 (52%), Positives = 469/677 (69%), Gaps = 17/677 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  + ++  Y P GDQP AIA+L++G++  ++ Q LLG TG+GKTFT+A +I    RPA+
Sbjct: 1   MPKYHLKAPYSPKGDQPTAIARLVEGVNQGQRYQTLLGATGTGKTFTIANLIAQTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +EF+ FFP N+VEYF+SYYDYYQPEAYVP +DTYI K SSINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNEFREFFPDNSVEYFISYYDYYQPEAYVPVSDTYIAKTSSINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ERND IVV+S+SCIYG+G    Y +  V+ K+G+++  +  L  LV+ QY
Sbjct: 121 LRHSATRSLFERNDVIVVASISCIYGLGIPSEYLKAAVKFKVGETLNIRSALRELVENQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI I RG FRV GD +EI P++ ED   R+ +FG+++E I    P TG+ ++++E I
Sbjct: 181 SRNDIDITRGRFRVRGDVLEIGPAY-EDRLVRIELFGDEVEAIRYLDPTTGEILQSLEAI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP+  LN A++ I++EL+ RL  L ++G+LLEAQRLEQR TYDLEML   G
Sbjct: 240 NIYPAKHFVTPKERLNVAVQAIRDELRGRLQFLNEQGKLLEAQRLEQRTTYDLEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L GR+ G PP  L +Y PED LL VDESHVT  Q+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLAGRSAGTPPECLIDYFPEDWLLVVDESHVTCSQLKAMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+ EE+      T+ VSATPG WEL+Q  G + EQ+IRPTG++DP
Sbjct: 360 IEHGFRLPSAADNRPLKSEEFWSKARQTVFVSATPGDWELKQSDGHLAEQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R  + QV+D+  EI + A++  R+L+T LTKRMAEDLT+YL E ++RVRY+HSE+ 
Sbjct: 420 LVEVRPTQGQVDDLLAEIRIRAEKQERVLITTLTKRMAEDLTDYLAENDVRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LV ILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V+   +LYAD +T S+  AI ET RRRE Q  +N+ + I P+   ++    I   L
Sbjct: 540 AARHVDGMALLYADNLTDSMSRAISETERRREIQKAYNELNGIVPRPAGKRASNSILSFL 599

Query: 738 L---------EDAATTNISIDA-------QQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
                     +DA    I+  A       Q   L+       +  L  +M  AA NLNFE
Sbjct: 600 ELSRRLQTDGKDADLVQITGRAVDALDSDQDAGLALDALPELIDQLETKMKEAAKNLNFE 659

Query: 782 EAARIRDEIKRLKSSPY 798
           EAA +RD IK+ +    
Sbjct: 660 EAASLRDRIKKFRQKLI 676


>gi|260887847|ref|ZP_05899110.1| excinuclease ABC subunit B [Selenomonas sputigena ATCC 35185]
 gi|330838715|ref|YP_004413295.1| excinuclease ABC, B subunit [Selenomonas sputigena ATCC 35185]
 gi|260862353|gb|EEX76853.1| excinuclease ABC subunit B [Selenomonas sputigena ATCC 35185]
 gi|329746479|gb|AEB99835.1| excinuclease ABC, B subunit [Selenomonas sputigena ATCC 35185]
          Length = 682

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/662 (52%), Positives = 468/662 (70%), Gaps = 2/662 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++   + P GDQP AI  L  GI + ++ Q+LLG TG+GKT+T+AK IE +Q+P +V+
Sbjct: 17  PFEVSAPFEPMGDQPRAIQDLAAGIENGQEAQVLLGATGTGKTYTIAKTIERVQKPTLVI 76

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQL SEFK FFP N V YFVSYYDYYQPEAY+P TDTYIEK++SIN++ID +R
Sbjct: 77  AHNKTLAAQLASEFKAFFPKNYVGYFVSYYDYYQPEAYIPSTDTYIEKDASINDEIDELR 136

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT SL ER DCI+V+SVSCIYG+GS ESY +M++ L  G +V ++++L  LV  QY+R
Sbjct: 137 HSATCSLFERRDCIIVASVSCIYGLGSPESYHEMVLSLHKGQTVVREDILRKLVAIQYER 196

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RG FRV GD IE+FP+   + A R+ +FG+++E I EF  LTG+         +
Sbjct: 197 NDIAFERGRFRVRGDVIEVFPAGWNNRAVRIELFGDEVERILEFDVLTGEIYGERTHSMV 256

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SHYVT +  +  AM  I EE   ++   ++EG+L+EAQR+EQR  YDLEM++  G C
Sbjct: 257 FPASHYVTKKEDMEIAMAAIDEEKIAQVAHFKEEGKLIEAQRIEQRTNYDLEMMQEMGYC 316

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LT R  G  P TL +Y P+D L+ +DESHVT+PQ+  M  GD  RK +L E
Sbjct: 317 SGIENYSRHLTHRPAGAAPYTLLDYFPDDFLIVMDESHVTMPQLKAMLNGDRSRKISLVE 376

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
            GFRLPS  DNRPL FEE+       I +SATP  +ELE+ Q  +VEQIIRPTGL+DP V
Sbjct: 377 NGFRLPSAFDNRPLSFEEFEQRINQIIYISATPAKYELEKAQQ-VVEQIIRPTGLLDPIV 435

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  E+ + A++  R+L+T LTK+MAE+LT+YL +  +RVRY+HS++ T 
Sbjct: 436 EVRPLAGQMDDLLSEVRIRAKKDERVLVTTLTKKMAENLTDYLKDMQVRVRYLHSDIATF 495

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EII DLR GKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAA
Sbjct: 496 ERAEIIHDLRAGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDTSLIQTIGRAA 555

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VILYAD IT S++ A+DET RRR  Q  +NK+H + P+++ + ++ +I+  L+ 
Sbjct: 556 RNAGGRVILYADRITDSMKRAMDETERRRTVQQAYNKEHGVTPKTIVKPVVPLIETTLVA 615

Query: 740 DA-ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           ++ A+     D ++  L+KK+ ++ +++L  QM  A+  L FE AA +RD I  L+ S  
Sbjct: 616 ESRASYGEDFDGKKKKLTKKQKESLIRTLLAQMQTASRALEFERAAELRDMIIELEGSLP 675

Query: 799 FQ 800
            +
Sbjct: 676 GK 677


>gi|254384208|ref|ZP_04999552.1| UvrABC system protein B [Streptomyces sp. Mg1]
 gi|194343097|gb|EDX24063.1| UvrABC system protein B [Streptomyces sp. Mg1]
          Length = 711

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/703 (50%), Positives = 476/703 (67%), Gaps = 36/703 (5%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++   + +  F++ + Y PSGDQPAAIA+L K I + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVSKIERTVAPFEVVSPYQPSGDQPAAIAELEKRIRAGEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +V LK+G+ +++ +L
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVSLKVGEEIDRDQL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG
Sbjct: 182 LRRFVDIQYTRNDVAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I     + ++  SHYV     +  A+  I+ EL  RL ELEK+G++LEAQRL  R TY
Sbjct: 241 EVISEDRELYVFPASHYVAGPERMEKAVAGIEAELTERLAELEKQGKMLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEM+   GSC  IENYS ++  R  G  P TL +Y PED LL +DESHVT+PQI  MY 
Sbjct: 301 DLEMMRQIGSCSGIENYSLHMDDRERGSAPNTLIDYFPEDFLLVIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G  VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLKWEEFQGRIGQTVYLSATPGKYELSRGDG-FVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGL+DP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+
Sbjct: 420 IRPTGLIDPEVVVKPTEGQIDDLVHEIRARVEKDERVLVTTLTKKMAEDLTDYFLELGIQ 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD +T +++ AI+ET RRREKQ+ +N  + I+PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADKMTPAMEKAIEETNRRREKQVAYNTANGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI----------------------------------SIDAQQLS 754
           I +++  I  E+  T  +                                          
Sbjct: 600 INDIVATIAREEVDTEELLGTGYRQGKEAKAPVPALGGRAAQAKGGKGAKGAKAAEALTD 659

Query: 755 LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
              ++  + ++ + ++M  AA  L FE AARIRDE+  LK   
Sbjct: 660 RPAQELASLIEQMTERMRGAAAELQFEVAARIRDEVGELKKEL 702


>gi|68535902|ref|YP_250607.1| excinuclease ABC subunit B [Corynebacterium jeikeium K411]
 gi|68263501|emb|CAI36989.1| excinuclease ABC, subunit B [Corynebacterium jeikeium K411]
          Length = 715

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/700 (50%), Positives = 480/700 (68%), Gaps = 27/700 (3%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
               +    +    F++ +DY P+GDQP AI +L + +   E+  +L+G TG+GK+ T A
Sbjct: 14  EFRPVGEVERSNAKFEVISDYKPAGDQPKAIEELHQRLDRGERDVVLMGATGTGKSATAA 73

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            +IE  QRP +VMAPNK LAAQL +E ++  P+NAVEYFVSYYDYYQPEAY+ +TDTYIE
Sbjct: 74  WLIEKEQRPTLVMAPNKTLAAQLANELRSLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIE 133

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+SSINE ++R+RHSAT +LL R D +VVSSVSCIYG+G+ +SY    V LK+ + VE+ 
Sbjct: 134 KDSSINEDVERLRHSATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLKVDEEVERD 193

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
             L  LV  QY R D+   RGTFRV GD+++I P++ E++A RV  FG+DI+ +   +PL
Sbjct: 194 RFLRLLVDIQYSRNDVAFTRGTFRVKGDTVDIIPAY-EELAVRVEFFGDDIDALYYIHPL 252

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG  IR V+ ++I+  +HYV     +  AM+ IKEEL  RL ELE  G+LLEAQRL  R 
Sbjct: 253 TGDVIRQVDELRIFPATHYVAGPERMEKAMQAIKEELAQRLEELENRGKLLEAQRLRMRT 312

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
            YDLEM++  G    IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM
Sbjct: 313 EYDLEMIQQVGFTSGIENYSRHIDGRAAGSAPATLIDYFPEDFLTIIDESHVTVPQIGGM 372

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           + GD  RK  L E+GFRLPS +DNRPL +EE++  +   + +SATPG +E+   QG  VE
Sbjct: 373 FEGDMSRKRNLVEHGFRLPSALDNRPLTWEEFDDRKGQCVYMSATPGDYEIAAAQGEYVE 432

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q+IRPTGLVDP VE+R    Q++D+ ++I    ++  R+L+T LTKRMAEDLT+YL E  
Sbjct: 433 QVIRPTGLVDPKVEVRPTEGQIDDLIEQIRQRTEKNERVLVTTLTKRMAEDLTDYLLEHG 492

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           ++VRYMHS++ TL+R+E++R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR
Sbjct: 493 VKVRYMHSDIDTLKRVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLR 552

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S+ SLIQTIGRAARNV+ +VI+YAD +T S+Q AIDET RRR KQ+ +N++H I+PQ ++
Sbjct: 553 SERSLIQTIGRAARNVSGEVIMYADQVTDSMQYAIDETERRRAKQIAYNEEHGIDPQPLR 612

Query: 727 EKIMEVIDPILLEDAATT------------------------NISIDAQQLSLSKKKGKA 762
           +KI +++D +   +A +                          +   + +  +++ + + 
Sbjct: 613 KKIADILDQVAELEAESGADAAGGAGADSSAGGRGESPEADWALVRGSSEEPMARPQLEK 672

Query: 763 HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGL 802
            ++ + +QM  AA  L FE A R+RDEI  LK     +G+
Sbjct: 673 LIQEMTEQMKSAAKELKFELAGRLRDEIADLKKE--LRGM 710


>gi|170016742|ref|YP_001727661.1| excinuclease ABC, B subunit [Leuconostoc citreum KM20]
 gi|169803599|gb|ACA82217.1| excinuclease ABC, B subunit [Leuconostoc citreum KM20]
          Length = 668

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/659 (51%), Positives = 469/659 (71%), Gaps = 2/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI+QL+ GI++  K Q+LLG TG+GKTFT++ VI+ +++P +V++
Sbjct: 10  FEVVSKYQPTGDQPRAISQLVSGINAGVKEQILLGATGTGKTFTISNVIKTVKKPTLVLS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S++N++ID++R+
Sbjct: 70  HNKTLAGQLYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNDEIDQLRN 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D IVV+SVS I+G+G    Y + ++ L++G+   + +L+  L+  Q+ R 
Sbjct: 130 SATSSLLSRRDVIVVASVSSIFGLGDPHQYQEHVINLRVGNEYGRDQLMRDLIGVQFTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG+FRV GD +EIFP+  ++VA R+  FG++I+ I E   LTG+     + + IY
Sbjct: 190 DIDFHRGSFRVRGDIVEIFPASEDEVALRIEFFGDEIDRIREINALTGETASERDFVSIY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T    +  A+  I++E+  ++ + E+EG+LLEAQR++QR  YDL MLE  G   
Sbjct: 250 PAKHFMTDDNQMQRALNGIRQEMAAQVTKFEQEGKLLEAQRIKQRTEYDLAMLEEMGFVG 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ PED L+ VDESHVT+PQ+ GM+ GD  RK TL  Y
Sbjct: 310 GIENYSRWMDGRQAGEPPFTLLDFFPEDFLIIVDESHVTMPQVRGMFNGDRARKETLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ-CQGIIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+  E+       I +SATPG +ELE+  +  I +QIIRPTGL+DP V
Sbjct: 370 GFRLPSALDNRPLKLPEFEKHVNQIIYMSATPGDYELERVTKDHIAQQIIRPTGLLDPEV 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EIN    +  R+ +T LTKRMAEDLT+YL    I+V Y+H+++KTL
Sbjct: 430 EVRPVMGQIDDLVGEINKRTDKNERVFITTLTKRMAEDLTDYLKNVGIKVAYLHADIKTL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIRDLRLGK+DVL+GINLLREG+D+PE  LVAILDADKEGFLR+  SLIQTIGRAA
Sbjct: 490 ERTEIIRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNPRSLIQTIGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VI+YAD++TKS+Q A+DET RRRE Q+++N  H+I P ++K+ I E I      
Sbjct: 550 RNANGHVIMYADSVTKSMQEAMDETARRREIQMQYNTVHDIVPTTIKKDIRERISVRTET 609

Query: 740 DAATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           D     I +       L + + +A +K++  QM  AA  LNFEEAA++RD +  LK+S 
Sbjct: 610 DGGAETIDLTQVAFRDLPQDEQQAIIKNMESQMKSAAKALNFEEAAQLRDSVMSLKASL 668


>gi|154494931|ref|ZP_02033936.1| hypothetical protein PARMER_03975 [Parabacteroides merdae ATCC
           43184]
 gi|154085481|gb|EDN84526.1| hypothetical protein PARMER_03975 [Parabacteroides merdae ATCC
           43184]
          Length = 675

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/665 (51%), Positives = 459/665 (69%), Gaps = 11/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA L  GI S    Q LLGVTGSGKTFT+A VI+ +++P ++++
Sbjct: 3   FELSSPFSPTGDQPEAIAALSDGIKSGVPFQTLLGVTGSGKTFTIANVIKEVRKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+  IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLPTTDTYIEKDLQINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVVSSVSC+YG+    ++++ +V L+ G  +++ +LL   V   Y  
Sbjct: 123 RATASLLSGRKDVIVVSSVSCLYGMADPTAFAEKVVHLEKGMRIDRDKLLRRFVDALYVN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
             I   RG FRV GD+++IFP+    +  A+R+  + ++++ IS F P TGQ+I   + +
Sbjct: 183 NKIEFNRGCFRVNGDTVDIFPAIETFDGAAYRIEFWDDEVDRISSFDPQTGQEIDEQDEL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + +VT +  +NTA+  I  +L  ++  L + G+  EA+RL +R+T+DLEM+   G
Sbjct: 243 NIYPTNLFVTTQERINTAIGQIDVDLGTQVNFLREIGKPYEAKRLYERVTFDLEMIRELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR  GE P  L +Y P+D LL VDESHVTIPQI  MY GD+ RK  L
Sbjct: 303 HCSGIENYSRYFDGRQAGERPFCLLDYFPKDFLLVVDESHVTIPQIRAMYGGDYSRKKNL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLP+ MDNRPL F+E+  L P  I VSATP  +ELE+ +GI+V+Q+IRPTGL+DP
Sbjct: 363 VDYGFRLPAAMDNRPLTFDEFESLTPLAIYVSATPADYELEKSEGIVVDQVIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    Q++D+ +EI   A    R+L+T LTKRMAE+LT YL    IR  Y+HS+V 
Sbjct: 423 VIEVRPTLNQIDDLMEEITQRAAVDERVLVTTLTKRMAEELTAYLTRMGIRCNYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERI+I+ DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERIQIMDDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK----IMEVI 733
           AARNVN KVI YAD IT S++L +DET RRREKQL +N+KH I P+ V +     + E  
Sbjct: 543 AARNVNGKVIFYADKITDSMRLTMDETARRREKQLAYNEKHGITPKQVIKNSVSLVAEKQ 602

Query: 734 DPILLEDAA----TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            P+  E  A      ++  D     +++K+ +  ++  +KQM  AA  L+F EAA+ RDE
Sbjct: 603 QPVTGEPYAYVEPEPSLVADPVVQYMNRKQLEKAIERTKKQMMEAAKKLDFIEAAQFRDE 662

Query: 790 IKRLK 794
           + +L+
Sbjct: 663 LVKLE 667


>gi|319440333|ref|ZP_07989489.1| excinuclease ABC subunit B [Corynebacterium variabile DSM 44702]
          Length = 721

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/720 (48%), Positives = 485/720 (67%), Gaps = 33/720 (4%)

Query: 116 LLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
                 + +      +    +  + F++ ++Y P+GDQPAAI +L + ++  E+  +L+G
Sbjct: 3   FAAEHPVLSESEFRPVGEVERTDSAFEVISEYEPAGDQPAAIKELDERLNRGERDIVLMG 62

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GK+ T A +IE  QRP +VMAPNK LAAQL +E ++  P+NAVEYFVSYYDYYQPE
Sbjct: 63  ATGTGKSATAAWLIEKQQRPTLVMAPNKTLAAQLANELRSLLPNNAVEYFVSYYDYYQPE 122

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AY+ +TDTYIEK+SSIN+ ++R+RHSAT +LL R D +VVSSVSCIYG+G+ +SY    V
Sbjct: 123 AYIAQTDTYIEKDSSINDDVERLRHSATSNLLSRRDVVVVSSVSCIYGLGTPQSYLDRSV 182

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            LK+G+ VE+   L  LV  QY R D+   RG FRV GD++++ P++ E++A RV  FG+
Sbjct: 183 VLKVGEEVERDRFLRLLVDIQYDRNDVSFTRGAFRVKGDTVDVIPAY-EELAVRVEFFGD 241

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ +   +PLTG  IR VE I+I+  +HYV     +  AM  I++EL+ R+ +LE  G+
Sbjct: 242 EIDSLFYIHPLTGDVIREVEEIRIFPATHYVAGPERMEKAMADIRDELEHRVADLENRGK 301

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRL  R  YDLEM++  G C  IENYSR++  R  G  P TL +Y P+D L  +DE
Sbjct: 302 LLEAQRLRMRTEYDLEMIQQVGYCSGIENYSRHIDQRESGSAPATLIDYFPDDYLTIIDE 361

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVT+PQI GM+ GD  RK  L ++GFRLPS +DNRPL +EE++  +   + +SATPG++
Sbjct: 362 SHVTVPQIGGMFEGDMSRKRNLVDFGFRLPSALDNRPLTWEEFDDRKGQCVYMSATPGNY 421

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           E+    G  VEQ+IRPTGLVDP VE+R    Q++D+ ++I    ++  R+L+T LTKRMA
Sbjct: 422 EIAAAGGEFVEQVIRPTGLVDPKVEVRPTDGQIDDLIEQIRQRVEKKERVLVTTLTKRMA 481

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL E  ++VRYMHS++ TL+R+E++R LRLG++DVLVGINLLREGLD+PE  LVA
Sbjct: 482 EDLTDYLLEHGVKVRYMHSDIDTLKRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVA 541

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS+ SLIQTIGRAARNV+ +VI+YAD IT S+Q AIDET RRR KQ+ +N
Sbjct: 542 ILDADKEGFLRSERSLIQTIGRAARNVSGEVIMYADKITDSMQYAIDETERRRAKQIAYN 601

Query: 716 KKHNINPQSVKEKIMEVIDPILLED---------------------AATTNISIDAQQLS 754
            +H I+PQ +++KI +++D +                          A  +I+   + +S
Sbjct: 602 TEHGIDPQPLRKKIADILDQVYENRGEDGPDDGATRMDGAAGSTGFGADVDIAAGPRGVS 661

Query: 755 ---------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
                    L++ + +  +  L  QM  AA  L FE A R+RDEI  LK     +G+ ++
Sbjct: 662 AVSGRDAGNLARPELEKLIADLTSQMQDAARALKFELAGRLRDEIADLKKE--LRGMVEA 719


>gi|229492754|ref|ZP_04386555.1| excinuclease ABC subunit B [Rhodococcus erythropolis SK121]
 gi|229320413|gb|EEN86233.1| excinuclease ABC subunit B [Rhodococcus erythropolis SK121]
          Length = 720

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/718 (49%), Positives = 481/718 (66%), Gaps = 32/718 (4%)

Query: 117 LKNGKIWTPHRSWSI-NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
             +      H  +    +  +    F++ + Y P+GDQPAAI +L K I+  EK  +LLG
Sbjct: 3   FASEHPVVAHSEFRPVGDIERSDARFEVVSPYEPAGDQPAAITELEKRINEGEKDVVLLG 62

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GK+ T A +IE +QRPA+VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPE
Sbjct: 63  ATGTGKSATTAWLIEKLQRPALVMAPNKTLAAQLANELREMLPNNAVEYFVSYYDYYQPE 122

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AY+ +TDTYIEK+SS+N+ ++R+RHSAT SLL R D +VV+SVSCIYG+G+ +SY    +
Sbjct: 123 AYIAQTDTYIEKDSSVNDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSI 182

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
           QL +G  V +   L  LV  QY R D+   RG+FRV GD++EI PS+ E++A R+  FG+
Sbjct: 183 QLDVGVEVPRDAFLRLLVDVQYNRNDMAFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGD 241

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +IE +   +PLTG  +R V+T++I+  +HYV     +  A K I+ EL+ RL ELE +G+
Sbjct: 242 EIEALYYLHPLTGDIVRQVDTVRIFPATHYVAGPERMERAAKDIEAELEERLAELEGKGK 301

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           LLEAQRL  R  YDLEM++  G C  IENYSR++ GR PG  P TL +Y PED LL +DE
Sbjct: 302 LLEAQRLRMRTQYDLEMIKQVGFCSGIENYSRHIDGRGPGTAPATLIDYFPEDFLLVIDE 361

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVT+PQI  MY GD  RK  L E+GFRLPS  DNRPL +EE++     T+ +SATPG +
Sbjct: 362 SHVTVPQIGAMYEGDMSRKRNLVEFGFRLPSATDNRPLTWEEFSQRIGQTVYLSATPGKY 421

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           EL Q  G  VEQ+IRPTGL+DP V ++  + Q++D+  EI   A++  R+L+T LTK+M+
Sbjct: 422 ELGQSGGEFVEQVIRPTGLIDPEVIVKPTKGQIDDLVHEIRERAERDERVLVTTLTKKMS 481

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL E  IRVRY+HS++ TL R+E++R LRLG++DVLVGINLLREGLD+PE  LVA
Sbjct: 482 EDLTDYLLELGIRVRYLHSDIDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVA 541

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS TSLIQTIGRAARNV+ +V +YAD IT S+  AI+ET RRREKQ+ +N
Sbjct: 542 ILDADKEGFLRSSTSLIQTIGRAARNVSGQVHMYADKITASMAQAIEETERRREKQVAYN 601

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTN----------------------------IS 747
           +K  ++PQ +++KI +++D +  E   T                              + 
Sbjct: 602 EKMGVDPQPLRKKIADILDQVYEEAEDTAASVDVGGSGRNATRGRRAQGEAGRAVSAGVY 661

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
                 S+ + +    +K L  QM  AA +L FE A R+RDEI  LK     +G+D +
Sbjct: 662 EGRDTKSMPRAELADLVKELTDQMMNAARDLQFELAGRLRDEISDLKKE--LRGMDAA 717


>gi|116617516|ref|YP_817887.1| excinuclease ABC subunit B [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096363|gb|ABJ61514.1| Excinuclease ABC subunit B [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 669

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/660 (50%), Positives = 466/660 (70%), Gaps = 1/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y P+GDQP AI +L+ GI++  K Q+LLG TG+GKTFT++ VI+ +++P +V++
Sbjct: 10  FEIKSKYEPTGDQPKAIEKLVGGINNHVKEQILLGATGTGKTFTISNVIKEVKKPTLVLS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S++N++ID++R+
Sbjct: 70  HNKTLAGQLYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNDEIDKLRN 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y   ++ L++G   E+ +L+  L+  Q+ R 
Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPHQYKDHVISLRVGYEYERDQLMRDLIDVQFTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD IEIFP+  +++A R+  FG++I+ I E   LTG+ I   + + I+
Sbjct: 190 DIDFHRGTFRVRGDVIEIFPASQDEMALRIEFFGDEIDRIREINSLTGETIAERDHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T    +  A+  I++E+  ++   +KEG+LLEAQR++QR  YDL MLE  G   
Sbjct: 250 PAKHFMTDDDQMQVALDGIRQEMNTQVELFKKEGKLLEAQRIKQRTEYDLAMLEEMGFVG 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++ P+D L+ +DESHVT+PQI GM+ GD  RK TL  Y
Sbjct: 310 GIENYSRWMDGRQAGEPPFTLIDFFPDDFLIVIDESHVTMPQIRGMFNGDKARKETLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG-IIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+  E+       I +SATPG +E E+     +++QIIRPTGL+DP V
Sbjct: 370 GFRLPSALDNRPLKLPEFEKHVNQIIYMSATPGDYENERVDSKHVIQQIIRPTGLLDPEV 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI   +++  R+ +T LTKRMAEDLT+YL +  I+V Y+H+++KTL
Sbjct: 430 EVRPVMGQIDDLVGEITKRSERDERVFITTLTKRMAEDLTDYLKDLGIKVAYLHADIKTL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIRDLRLGK+DVL+GINLLREG+D+PE  LVAILDADKEGFLR+  SLIQTIGRAA
Sbjct: 490 ERTEIIRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNPRSLIQTIGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VI+YAD +T+S+  AIDET RRRE Q+++N +H I P+++K+ I ++I      
Sbjct: 550 RNENGHVIMYADKMTRSMLEAIDETARRREIQMQYNTQHGITPKTIKKDIRDLISVTHAA 609

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
                          L K + ++ + ++  QM  AA  L+FEEAA++RD +  LK+    
Sbjct: 610 TEEKVVDLTKVAFNDLPKDEQQSIVDNMTSQMKAAAKALDFEEAAQLRDTVMELKTRANL 669


>gi|317153518|ref|YP_004121566.1| excinuclease ABC subunit B [Desulfovibrio aespoeensis Aspo-2]
 gi|316943769|gb|ADU62820.1| excinuclease ABC, B subunit [Desulfovibrio aespoeensis Aspo-2]
          Length = 666

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/666 (50%), Positives = 462/666 (69%), Gaps = 2/666 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +++ P GDQP AI QL  G+ +  + Q+LLG TG+GKTFTMA V+  + RPA+
Sbjct: 1   MPRFRLVSEFTPKGDQPDAIDQLAAGLGAGVRDQVLLGATGTGKTFTMANVVARLDRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY+EF+  FP NAVEYFVSYYDYYQPEAY+P +D YIEK+SSIN+ ID+
Sbjct: 61  VLAPNKTLAAQLYTEFRGLFPDNAVEYFVSYYDYYQPEAYLPHSDVYIEKDSSINDDIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+AT +LL R D ++V+SVSCIYG+GS + Y++M++ ++ G ++  + LL  LV+  Y
Sbjct: 121 LRHAATHALLTRRDVLIVASVSCIYGLGSPDFYAKMVIPVEEGQAMTMESLLGRLVEIHY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D    RGTFRV GD +EI P++  + A R+  FG++IE +SE  PLTG+    +   
Sbjct: 181 ERNDYDFHRGTFRVRGDVVEIIPAYSREKALRIEFFGDEIESLSETDPLTGEVRDRLRKT 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SH+V+ R  L+ A + I++EL+ RL E +   RL+EAQRLEQR  YDLE++E  G
Sbjct: 241 VIYPGSHFVSDRDNLDRAARDIRDELQRRLAEFKAGNRLVEAQRLEQRTMYDLEIIEELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L GR+  +PP TL +Y P+D +LFVDESH+ +PQ+ GM++GD  RK TL
Sbjct: 301 YCNGIENYSRHLDGRSKDQPPATLLDYFPKDFILFVDESHIALPQVGGMFKGDRSRKTTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS +DNRPL +EE+       + VSATPG  EL+  QG++VEQIIRPTGL+DP
Sbjct: 361 VDFGFRLPSALDNRPLNYEEFQARIGQAVYVSATPGHLELDLAQGVVVEQIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R  + Q++D+  E      +  R+L+T LTKRMAEDL EYL    +  RY+HS++ 
Sbjct: 421 VIEVRKVQGQIDDLLTECKKRQARDERVLVTTLTKRMAEDLNEYLNSMGVPSRYLHSDID 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+ II+ LR G+F VLVGINLLREGLDIPE  LV ILDADKEGFLRS  SLIQT GR
Sbjct: 481 TLERMAIIQALRAGEFFVLVGINLLREGLDIPEVSLVTILDADKEGFLRSARSLIQTFGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--DP 735
           AARNV+ +V+LYAD IT+S+  A+DET RRRE+Q  HN+ H I P ++++++  +     
Sbjct: 541 AARNVDGRVVLYADGITRSMAEAMDETARRRERQQAHNEAHGITPTTIRKEMGNLFADKS 600

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                 A    +I+      S K+    +K L +QM  AA  L FE AA +RD +  ++ 
Sbjct: 601 EARPQGAGRLPAIEGVPAGTSVKEMHTLVKQLERQMREAARELEFERAAALRDRVALIRG 660

Query: 796 SPYFQG 801
                G
Sbjct: 661 RILELG 666


>gi|255533917|ref|YP_003094289.1| excinuclease ABC subunit B [Pedobacter heparinus DSM 2366]
 gi|255346901|gb|ACU06227.1| excinuclease ABC, B subunit [Pedobacter heparinus DSM 2366]
          Length = 679

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/670 (50%), Positives = 480/670 (71%), Gaps = 16/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P+GDQPAAI QL++G+++ +  Q LLGVTGSGKTFT+A VI+  Q+P ++++
Sbjct: 3   FQIVSDYKPTGDQPAAIKQLVEGVNNEDHYQTLLGVTGSGKTFTIANVIQQTQKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAV YFVSYYDYYQPEA++  ++TYIEK+ SINE+I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPENAVNYFVSYYDYYQPEAFIASSNTYIEKDLSINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             T +L+  R D IVVSS+SCIYG+G+ E +S+ + +  +G  + +   L SLV+  Y R
Sbjct: 123 RTTSALMSGRRDVIVVSSISCIYGMGNPEDFSRSVFRFSVGLRISRNSFLHSLVEILYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD+++IFP++L++ A+RVS FG+DIE +S   P+TG+ +  +E + I
Sbjct: 183 TTTDFKRGTFRVKGDTVDIFPAYLDN-AYRVSFFGDDIEALSVIDPVTGKTLEKLEDMAI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VTP+   N+++  I+EEL++R  +L  +  LLEA+RLE+R+ +D+EM++  G C
Sbjct: 242 YPANLFVTPKERFNSSIWGIQEELEIRKNQLIGDRHLLEAKRLEERVNFDIEMMKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GR PG  P  L +Y P+D L+ +DESHVT+PQI  MY GD  RK +L E
Sbjct: 302 SGIENYSRFFDGRAPGMRPFCLLDYFPDDYLMVIDESHVTVPQIRAMYGGDRSRKMSLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL F+E+  L P TI VSATP  +EL++ +GI++EQ+IRPTGL+DP +
Sbjct: 362 YGFRLPSALDNRPLNFDEFERLAPQTIYVSATPADYELQKSEGIVIEQVIRPTGLLDPLI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R A  QV+D+ DEI+   + G R+L+T LTKRMAE+LT+Y+   NI+ RY+HSEVKTL
Sbjct: 422 DVRPAVNQVDDLLDEIDKTIKLGDRVLVTTLTKRMAEELTKYMDRLNIKCRYIHSEVKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R LRLG+FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS  +LIQTIGRAA
Sbjct: 482 ERVEILRGLRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSDRALIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD +T S++  I+ET RRREKQ+ +N +H I P++V +    +++   + 
Sbjct: 542 RNDRGRVIMYADNMTDSMERTIEETNRRREKQVAYNLEHGIVPKTVGKSREAIMEQSSVL 601

Query: 740 D--------------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           D                  +I+ D     ++K + +  +   RK+M  AA +++F  AAR
Sbjct: 602 DFSSGERKRAKPYVEVDEVSIAADPVVQYMTKPEMQKSIDKTRKEMAKAAKDMDFLLAAR 661

Query: 786 IRDEIKRLKS 795
           +RDE+  ++ 
Sbjct: 662 LRDEMFAMEK 671


>gi|149277623|ref|ZP_01883764.1| excinuclease ABC, subunit B [Pedobacter sp. BAL39]
 gi|149231856|gb|EDM37234.1| excinuclease ABC, subunit B [Pedobacter sp. BAL39]
          Length = 678

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/669 (51%), Positives = 479/669 (71%), Gaps = 15/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P+GDQP AI QL+ G++S E  Q LLGVTGSGKTFT+A VI+  Q+P ++++
Sbjct: 3   FQLVSDYKPTGDQPNAIRQLVDGVNSNEHYQTLLGVTGSGKTFTVANVIQETQKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAV YFVSYYDYYQPEA++P T+TYIEK+ SINE+I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPENAVNYFVSYYDYYQPEAFMPSTNTYIEKDLSINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             T +L+  R D IVVSS+SCIYG+G+ E +S+ + +  +G  + +   L SLV+  Y R
Sbjct: 123 RTTSALMSGRRDVIVVSSISCIYGMGNPEDFSRSVFRFAVGTRISRNSFLHSLVEILYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD+++IFP++L++ A+RVS FG+DIEE+S   P+TG+ +  +E + I
Sbjct: 183 TTTEFKRGTFRVKGDTVDIFPAYLDN-AYRVSFFGDDIEELSLIDPVTGKTLDKMEDMAI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VTP+   ++++  I+EEL++R  +L  +  LLEA+RLE+R+ +D+EM++  G C
Sbjct: 242 YPANLFVTPKDRFSSSIWGIQEELEVRKNQLLGDKHLLEAKRLEERVNFDIEMMKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GR+PG  P  L +Y P+D L+ +DESHVT+PQI  MY GD  RK +L E
Sbjct: 302 SGIENYSRFFDGRSPGMRPFCLLDYFPDDYLMVIDESHVTVPQIRAMYGGDRSRKMSLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL F+E+  L P TI VSATP  +EL + +GI++EQ+IRPTGL+DP +
Sbjct: 362 YGFRLPSALDNRPLNFDEFEGLAPQTIYVSATPADYELHKSEGIVIEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E++ A  QV+D+ +EI+   + G RIL+T LTKRMAE+LT+Y+   NI+ RY+HSEVKTL
Sbjct: 422 EVKPAINQVDDLLEEIDKTIKMGDRILVTTLTKRMAEELTKYMDRLNIKCRYIHSEVKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R LRLG+FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS  +LIQTIGRAA
Sbjct: 482 ERVEILRGLRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSDRALIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD IT+S++  I ET RRREKQ+ +N +H I P++V +    +++   + 
Sbjct: 542 RNDRGRVIMYADNITESMERTISETNRRREKQVAYNLEHGIVPKTVGKSREAILEQTSVL 601

Query: 740 D-------------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           D                 +++ D     ++K + +  +   +K+M  AA  ++F  AAR+
Sbjct: 602 DFSGNATRAKAYVEVDEVSMAADPIVQYMNKGEMQKSIDKTKKEMAKAAKEMDFLLAARL 661

Query: 787 RDEIKRLKS 795
           RDE+  ++ 
Sbjct: 662 RDEMFAMEK 670


>gi|227496065|ref|ZP_03926374.1| excision endonuclease subunit UvrB [Actinomyces urogenitalis DSM
           15434]
 gi|226834393|gb|EEH66776.1| excision endonuclease subunit UvrB [Actinomyces urogenitalis DSM
           15434]
          Length = 698

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/692 (50%), Positives = 482/692 (69%), Gaps = 25/692 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + +  +    F++ + Y PSGDQPAAIA+L + +++ EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVTDLRRADKPFEVISPYTPSGDQPAAIAELTERLNAGEKDIVLLGATGTGKSATTAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           +E +QRP +++ PNK LAAQ+ +EF+   P NAVEYFVSYYDYYQPEAYVP+TDT+IEK+
Sbjct: 62  VEQVQRPTLILEPNKTLAAQMAAEFRELLPGNAVEYFVSYYDYYQPEAYVPQTDTFIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN++++R+RHSAT SLL R D +VVSSVSCIYG+G+ + Y   +  L +G+ +++ EL
Sbjct: 122 SSINDEVERLRHSATNSLLTRRDVVVVSSVSCIYGLGTPQEYVDRMTPLAVGERIDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R DI   RGTFRV GD++EI P + E++A R+  FG++IE ++  +P+TG
Sbjct: 182 LRRFVGMQYTRNDIDFTRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIESLATLHPVTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             I  V+ + ++  SHYV     L  A+K I++EL  RL  LE++G+LLEAQRL  R TY
Sbjct: 241 DVISTVDQVFVFPASHYVAGPERLTRAIKGIEDELADRLAVLERDGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML   G+C  +ENYS ++ GR+PG PP TL +Y PED LL +DESHVT+PQI  M+ 
Sbjct: 301 DLEMLGQIGTCSGVENYSMHIDGRSPGTPPNTLLDYFPEDFLLVIDESHVTVPQIGAMHE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL F E+      T+ +SATPG +E+++  G +VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLTFAEFEERIGQTVYLSATPGDYEMKRSDG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP + ++  + Q++D+ +E+     +  R+L+T LTKRMAEDLT YL +R ++
Sbjct: 420 IRPTGLVDPKIVVKPTQGQIDDLLEEVRARTDKDERVLVTTLTKRMAEDLTTYLADRGVK 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y+HS+V TL R+E++R+LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VEYLHSDVDTLRRVELLRELRLGQFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSS 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD +T +++ AIDET RRR KQ+ +N  H I+PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGEVHMYADKVTPAMREAIDETERRRAKQMAYNDAHGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI-----------------------SIDAQQLSLSKKKGKAHLK 765
           I +V D +  ED  T  +                       ++  +    ++      + 
Sbjct: 600 IADVTDMLAREDVDTEELLAGGYRGHEDRQVATRRKKAAEATVREKLAGAAEADLVELIN 659

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            L  QMH AA++L+FE AAR+RDEI+ LK   
Sbjct: 660 ELTGQMHAAAEDLHFELAARLRDEIQDLKKEL 691


>gi|225848324|ref|YP_002728487.1| excinuclease ABC subunit B [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643245|gb|ACN98295.1| excinuclease ABC subunit B [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 662

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/657 (51%), Positives = 471/657 (71%), Gaps = 3/657 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F+++  + P+GDQP AI QL + + S    Q+LLG TG+GKTFT+A +IE   RP ++
Sbjct: 4   SIFKLKAPFEPTGDQPKAIKQLYENLKSGINEQVLLGATGTGKTFTIANLIEKYGRPTLI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           ++ NK LAAQLY E K  FP NAVEYFVSYYDYYQPEAY+P+ D YIEK+S+IN+ IDR+
Sbjct: 64  LSHNKTLAAQLYREIKELFPDNAVEYFVSYYDYYQPEAYIPQKDLYIEKDSAINDSIDRL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSATRSL+ER D IVV+SVSCIYG+G+ E Y ++ +QL +G  ++++ LL  LV+ QY+
Sbjct: 124 RHSATRSLIERPDTIVVASVSCIYGLGTPEFYEKLRLQLYVGMEIDRQTLLRKLVELQYQ 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D  + RGTF+V GD++EI P++ EDV  R+  FG++IE I+E         R +E   
Sbjct: 184 RDDFSLKRGTFKVKGDTVEILPAYTEDVIIRIEFFGDEIENITEIDIFNRDVKRKLERTV 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SHYV PRP +  A+K I+++L++ + E  K+G+ +EA RL QR  YD+EM+   G+
Sbjct: 244 IFPASHYVIPRPDMIEAIKQIQKDLEIEVEEFRKQGKEIEANRLWQRTNYDIEMMLELGT 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSRY  GR PGEPP TL +Y PED LL +DESHVTIPQI  MY GD  RK  L 
Sbjct: 304 CKGIENYSRYFDGRKPGEPPYTLIDYFPEDFLLIIDESHVTIPQIKAMYNGDLARKENLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YG+R+ S  DNRPL+FEE+       I VSATP  WE+E+ +G+IVEQIIRPTGL+DP 
Sbjct: 364 KYGWRMKSAYDNRPLKFEEFVSKIQKAIYVSATPAQWEIERSKGVIVEQIIRPTGLLDPV 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++    Q++D+ +EI    ++  R L+  LTK+MAE+L +YL ER+I+  Y+HSE+ T
Sbjct: 424 IEVKKTEGQIDDLINEIWKVKERNERALVITLTKKMAENLADYLQERDIKAVYLHSEIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER +II++ R GK+DV+VG+NLLREGLD+PE  LVA+LDADK+GFLRSKT+LIQTIGRA
Sbjct: 484 IERAKIIKEFREGKYDVIVGVNLLREGLDMPEVSLVAVLDADKQGFLRSKTALIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN N K ILYAD +T ++   I+ET RRR+ Q E+N+KH I P++VK++I ++I    L
Sbjct: 544 ARNENGKAILYADKLTPAMVETIEETNRRRKLQQEYNEKHGITPKTVKKEIKDLIS---L 600

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           E+     +  +  +   +++     ++ L KQM   A N  FE+AA++RD++++LK 
Sbjct: 601 EELGILELYQEIPEDISTEEDLLKEIEKLEKQMWEYAKNWEFEKAAQVRDKLEKLKK 657


>gi|222529427|ref|YP_002573309.1| excinuclease ABC subunit B [Caldicellulosiruptor bescii DSM 6725]
 gi|312622339|ref|YP_004023952.1| excinuclease ABC subunit B [Caldicellulosiruptor kronotskyensis
           2002]
 gi|254764899|sp|B9MS82|UVRB_ANATD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|222456274|gb|ACM60536.1| excinuclease ABC, B subunit [Caldicellulosiruptor bescii DSM 6725]
 gi|312202806|gb|ADQ46133.1| excinuclease ABC, B subunit [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 661

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/660 (56%), Positives = 485/660 (73%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +D+ P+GDQP AI  L +GI   EK Q LLGVTGSGKTFTMAKVIE +QRP +
Sbjct: 1   MKKFKLVSDFKPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSINE+ID+
Sbjct: 61  VLAHNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIY +GS E Y  + + L+ G + ++ E++  L++ QY
Sbjct: 121 LRHSATSALFERRDVIIVASVSCIYSLGSPEDYLNLTISLRPGMTKDRDEVIRDLIRMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RG FRV GD +E+FP+   D A R+  FG++IE I+EF  +TG+ I     +
Sbjct: 181 ERNDIDFRRGRFRVRGDVLEVFPASNTDRAIRIEFFGDEIERITEFDVVTGEVIGRRNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYVT    L  A+K I+EEL+ RL EL   G+L+EAQRLEQR  YD+EML+  G
Sbjct: 241 AIFPASHYVTTAEKLKRAIKSIEEELEQRLKELRSMGKLVEAQRLEQRTRYDIEMLQEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSR+LTGR PG PP TL +Y P D ++F+DESHVTIPQ+  MY GD  RK TL
Sbjct: 301 FCKGIENYSRHLTGRPPGSPPYTLLDYFPNDFIMFIDESHVTIPQVRAMYNGDKARKDTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL FEE+       I VSATPG +EL++    IVEQIIRPTGLVDP
Sbjct: 361 VEYGFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYELKKS-SRIVEQIIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+   + Q++ +  EI    ++  R+L+T LTK+MAE LTEYL +  IRVRYMHS++ 
Sbjct: 420 EIEVHPVQGQIDHLIGEIRKRVEKNQRVLVTTLTKKMAESLTEYLKDVGIRVRYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ KVI+YAD IT ++Q AIDET RRR+ Q+E+N+KH I PQ+V++ I ++I+  +
Sbjct: 540 AARNVDGKVIMYADRITNAMQKAIDETNRRRKIQIEYNQKHGIVPQTVRKGIRQIIEATV 599

Query: 738 LEDAATTNISIDAQQ--LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                     +  ++   +++K++ + ++K L ++M   A  L FE+AA++RD+I  LK 
Sbjct: 600 SVAEEEEKYEVVEKEIVENMTKEEIEEYIKELEQEMKKLAIELEFEKAAKVRDKIFELKK 659


>gi|88809951|ref|ZP_01125456.1| excinuclease ABC subunit B [Synechococcus sp. WH 7805]
 gi|88786141|gb|EAR17303.1| excinuclease ABC subunit B [Synechococcus sp. WH 7805]
          Length = 678

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/679 (51%), Positives = 457/679 (67%), Gaps = 16/679 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +   Y P GDQP AI QL+  ++  ++ Q LLG TG+GKTFTMA VI    RPA+
Sbjct: 1   MPAFDLTAPYSPKGDQPTAIKQLVARVNDGQRYQTLLGATGTGKTFTMANVIAQTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFPHNAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPHNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G+++  +  L  LV  QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGETLNIRGQLRELVNNQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D  I RG FR+ GD +EI P++ ED   RV +FG+++E I    P TG+ ++++ETI
Sbjct: 181 SRNDTEIARGRFRMKGDVLEIGPAY-EDRLVRVELFGDEVEAIRYVDPTTGEILQSLETI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP+  L+TA++ I+ EL  RL  L  EG+LLEAQRLEQR  YDLEML   G
Sbjct: 240 NIYPAKHFVTPKDRLDTAVQAIRSELNERLDFLNAEGKLLEAQRLEQRTKYDLEMLGQVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L GR PG  P  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLAGREPGSAPECLIDYFPDDWLLIVDESHVTCSQLQAMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+      T+ VSATPG+WELE     + +Q+IRPTG++DP
Sbjct: 360 IDHGFRLPSAADNRPLKGEEFWTKARQTVFVSATPGNWELEVSGDEVAQQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    QV+D+  EI   A +  R+L+T LTKRMAEDLT+YL E ++RVRY+HSE+ 
Sbjct: 420 IVEVRPTNGQVDDLLGEIRDRASKQQRVLVTTLTKRMAEDLTDYLAENDVRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---- 733
           AAR+V  K +LY D +T S+  AI ET RRR  Q  +N+KH I P +  +K    I    
Sbjct: 540 AARHVEGKALLYGDNLTDSMAKAISETERRRSIQQAYNEKHGIVPTAAGKKASNSILSFL 599

Query: 734 -----------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                      D  L++ A+    +++     ++       +  L  +M  AA  L+FEE
Sbjct: 600 ELSRKLKTDGPDADLVKVASKAVEALEDDADGMTLDALPELIDQLELKMKDAAKKLDFEE 659

Query: 783 AARIRDEIKRLKSSPYFQG 801
           AA +RD IKRL+     Q 
Sbjct: 660 AANLRDRIKRLRQKLVGQN 678


>gi|157414255|ref|YP_001485121.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9215]
 gi|157388830|gb|ABV51535.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str. MIT
           9215]
          Length = 679

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/676 (50%), Positives = 465/676 (68%), Gaps = 17/676 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  +++Q  Y P+GDQP AI QL+KG+++ ++ Q LLG TG+GKTFT+A VI+   RPA+
Sbjct: 1   MNNYKLQAPYEPNGDQPEAIKQLVKGVNTGKEFQTLLGATGTGKTFTIANVIQQTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G S+  +  L SLV+ QY
Sbjct: 121 LRHSATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFEVGKSINLRSSLRSLVENQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI I RG FR+ GD +EI P++ ED   R+  FG+++E I    P TG+ + ++E +
Sbjct: 181 TRNDIEITRGRFRIKGDVLEIGPAY-EDRLIRIEFFGDEVEAIRYIDPTTGEILESLEQV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+VTP+  L +A+  I+ ELK +L +   EG+LLEAQRLEQR  YDLEML+  G
Sbjct: 240 SVYPAKHFVTPKERLESAISAIRSELKTQLEKFTYEGKLLEAQRLEQRTKYDLEMLKEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L+GR  G PP  L +Y P+D LL VDESHVT PQ+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLSGREEGSPPECLIDYFPKDWLLVVDESHVTCPQLHAMYNGDQSRKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+      T+ +SATPG WEL+QC G  +EQ+IRPTG++DP
Sbjct: 360 IDHGFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWELDQCDGKFIEQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R +  Q+ED+  EI + A++  R+L+T LTKRMAEDLT++L E  +RVRY+HSE+ 
Sbjct: 420 VIDVRPSEGQIEDLLSEIRIRAKKNQRVLVTTLTKRMAEDLTDFLSENKVRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLR+G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V    +LYAD  T S++ AI ET RRR  Q ++N+ + I P+   +KI   I   L
Sbjct: 540 AARHVEGVALLYADNFTDSMKRAISETERRRTIQKKYNQVNGITPKPAGKKIENSILSFL 599

Query: 738 LEDAATTNISIDAQQLSLSK----------------KKGKAHLKSLRKQMHLAADNLNFE 781
                     +    +++                  ++    ++ L  +M  AA  LNFE
Sbjct: 600 ELSRKLDADGLSKDLINIVNNKTDSILNSSDNQCLLEELPDLIEKLEIKMKDAAKELNFE 659

Query: 782 EAARIRDEIKRLKSSP 797
           EAA +RD IK+L+   
Sbjct: 660 EAANLRDRIKKLRQKL 675


>gi|188996747|ref|YP_001930998.1| excinuclease ABC, B subunit [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931814|gb|ACD66444.1| excinuclease ABC, B subunit [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 663

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/657 (51%), Positives = 468/657 (71%), Gaps = 3/657 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F +++++ P+GDQP AI QL + + S    Q+LLG TG+GKTFT+A +IE   RP ++
Sbjct: 4   KIFNLKSNFKPTGDQPKAIKQLYENLISGVNQQVLLGATGTGKTFTIANLIEKYGRPTLI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           ++ NK LAAQLY E K  FP NAVEYFVSYYDYYQPEAY+P+ D YIEK+S+IN+ IDR+
Sbjct: 64  LSHNKTLAAQLYREIKELFPDNAVEYFVSYYDYYQPEAYIPQKDLYIEKDSAINDAIDRL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSATRSL+ER D IVV+SVSCIYG+G+ E Y ++ +QL +G  ++++ LL  LV+ QY+
Sbjct: 124 RHSATRSLIERPDTIVVASVSCIYGLGTPEFYEKLRLQLYVGMEIDRQTLLRKLVELQYQ 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D  + RGTF+V GD++EI P++ ED+  RV  FG++IE ISE         R ++   
Sbjct: 184 RDDFSLKRGTFKVKGDTVEILPAYTEDIIVRVEFFGDEIESISEIDIFNRDVKRKLDRTV 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SHYV PRP +  A+K I+++L++ + E  + G+ +EA RL QR  YD+EM+   G+
Sbjct: 244 IFPASHYVIPRPDMLEAIKQIQKDLEIEVEEFRRAGKEIEANRLWQRTNYDIEMMLELGT 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSRY  GR PGEPP TL +Y PED LL VDESHVTIPQI  MY GDF RK  L 
Sbjct: 304 CKGIENYSRYFDGRKPGEPPYTLIDYFPEDFLLIVDESHVTIPQIKAMYNGDFSRKENLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YG+R+ S  DNRPL+FEE+       I VSATP  WE+++ +G+IVEQIIRPTGL+DP 
Sbjct: 364 KYGWRMKSAYDNRPLKFEEFVQKIQKAIYVSATPADWEIKRSKGVIVEQIIRPTGLLDPV 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++    Q++D+ +EI    ++  R+++  LTK+MAE L +YL ER I+  Y+HSE+ T
Sbjct: 424 IEVKKTEGQIDDLINEIWKVKERDERVIVITLTKKMAEHLADYLTEREIKAIYLHSEIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER++II++ R GK+DV+VG+NLLREGLD+PE  LVA+LDADK+GFLRSKT+LIQTIGRA
Sbjct: 484 IERVKIIKEFREGKYDVIVGVNLLREGLDMPEVSLVAVLDADKQGFLRSKTALIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN K ILYAD +T ++   I+ET RRR+ Q E+NKKH I P+++ +++ ++I    L
Sbjct: 544 ARNVNGKAILYADKLTPAMIETIEETNRRRKIQEEYNKKHGIIPKTISKEVKDLIS---L 600

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           E+     I         S++     ++ L KQM   A N  FE+AA IRD++++LK 
Sbjct: 601 EELGILEIYNQLPDDINSEEDLMKKIEQLEKQMWDYAKNWEFEKAAEIRDQLEKLKK 657


>gi|260903783|ref|ZP_05912105.1| excinuclease ABC subunit B [Brevibacterium linens BL2]
          Length = 710

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/691 (51%), Positives = 476/691 (68%), Gaps = 26/691 (3%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
             + ++ +  F++ ++Y PSGDQP AI ++ + +   E+  +LLG TG+GK+ T A +IE
Sbjct: 13  RPDVTRTVAPFEVVSEYSPSGDQPTAITEISERLDQGERDIVLLGATGTGKSATTAWLIE 72

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP ++MAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SS
Sbjct: 73  QVQRPTLIMAPNKTLAAQLANEFRQLLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSS 132

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +N++++R+RHSAT SLL R D +VVS+VSCIYG+G+ E Y   +V L+ G+  ++ ELL 
Sbjct: 133 VNDEVERLRHSATNSLLTRRDVVVVSTVSCIYGLGTPEEYVDRMVTLQRGEQCDRDELLK 192

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RGTFRV GD++EI P + E++A R+  FG+ IE +   +PLTG+ 
Sbjct: 193 RFVSMQYARNDMAFTRGTFRVRGDTVEIIPQY-EELALRIEFFGDVIESLQTLHPLTGEI 251

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +R  ETI ++  SHYV     +  A+  I++EL+ RL E E + +LLEAQRL+ R TYDL
Sbjct: 252 VREEETIHVFPASHYVAGENRMGRAVSEIEDELQKRLSEFESQNKLLEAQRLKMRTTYDL 311

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+E+ G    IENYSR++ GR  G  P  L +Y PED LL VDESHVT+PQI GMY GD
Sbjct: 312 EMMESMGFTSGIENYSRHIDGRPAGSAPNCLLDYFPEDFLLVVDESHVTVPQIGGMYEGD 371

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL E+GFRLPS MDNRPL+F+E+       + +SATPG++EL    G  V+QIIR
Sbjct: 372 MSRKRTLVEHGFRLPSAMDNRPLKFDEFRERIGQAVYLSATPGNFELGNANG-YVQQIIR 430

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++  + Q++D+ DEI        R+L+T LTK+MAEDLT+YL E ++RV+
Sbjct: 431 PTGLVDPEIVVKPTKGQIDDLLDEIRTRVDAQERVLVTTLTKKMAEDLTDYLLEHDVRVQ 490

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++ +LR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS
Sbjct: 491 YLHSDVDTLRRVELLTELRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSATS 550

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARN+N +V +YADTIT+S++ AIDET RRRE Q+ HNK+H I+P  + +KI 
Sbjct: 551 LIQTIGRAARNINGQVHMYADTITRSMREAIDETDRRREIQVAHNKEHGIDPMPLVKKIA 610

Query: 731 EVIDPILLEDAATTNI------------------------SIDAQQLSLSKKKGKAHLKS 766
           ++ + +  EDA T  +                        +  +  L          ++S
Sbjct: 611 DITERLQREDADTRELLTEFDYGKGKRGYNSTLTDEQRQAAGKSGSLRPPAADLTELIES 670

Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           L  QMH AA  L FE AAR+RDE+  LK   
Sbjct: 671 LTSQMHTAAAELQFELAARLRDELSDLKQEL 701


>gi|123969390|ref|YP_001010248.1| excinuclease ABC subunit B [Prochlorococcus marinus str. AS9601]
 gi|123199500|gb|ABM71141.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str.
           AS9601]
          Length = 679

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/676 (51%), Positives = 467/676 (69%), Gaps = 17/676 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  +++Q  Y P+GDQP AI +L+KG+++ ++ Q LLG TG+GKTFT+A VI+   RPA+
Sbjct: 1   MNNYKLQAPYEPNGDQPEAIKKLVKGVNNGKQFQTLLGATGTGKTFTIANVIQQTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G S+  +  L SLV+ QY
Sbjct: 121 LRHSATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFEVGKSINLRSSLRSLVENQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI I RG FR+ GD +EI P++ ED   R+ +FG+++E I    P TG+ + ++E +
Sbjct: 181 TRNDIEITRGRFRIKGDVLEIGPAY-EDRLIRIELFGDEVEAIRYVDPTTGEILESLEQV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+VTP+  L +A+  I+ ELK +L +   EG+LLEAQRLEQR  YDLEML+  G
Sbjct: 240 SVYPAKHFVTPKERLESAISAIRSELKTQLDKFTYEGKLLEAQRLEQRTKYDLEMLKEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L+GR  G PP  L +Y P+D LL VDESHVT PQ+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLSGREEGSPPECLIDYFPKDWLLVVDESHVTCPQLHAMYNGDQSRKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+      T+ +SATPG WEL+QC G  +EQ+IRPTG++DP
Sbjct: 360 IDHGFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWELDQCDGEFIEQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R +  Q+ED+  EI + A++  R+L+T LTKRMAEDLT++L E  +RVRY+HSE+ 
Sbjct: 420 VIDVRPSEGQIEDLLSEIRIRAEKNQRVLVTTLTKRMAEDLTDFLSENKVRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLR+G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V    +LYAD  T S++ AI ET RRR  Q ++N+ + I P+   +KI   I   L
Sbjct: 540 AARHVEGVALLYADNFTDSMKRAISETDRRRTIQKKYNQVNGITPKPAGKKIENSILSFL 599

Query: 738 L---------EDAATTNISIDAQQLSLSK-------KKGKAHLKSLRKQMHLAADNLNFE 781
                           NI  +     LS        ++    ++ L  +M  AA  LNFE
Sbjct: 600 ELSRKLDAGGLSKDLINIVNNKTDAILSSSDNQCLLEELPDLIEKLEIKMKDAAKELNFE 659

Query: 782 EAARIRDEIKRLKSSP 797
           EAA +RD IK+L+   
Sbjct: 660 EAANLRDRIKKLRQKL 675


>gi|261367038|ref|ZP_05979921.1| excinuclease ABC subunit B [Subdoligranulum variabile DSM 15176]
 gi|282571156|gb|EFB76691.1| excinuclease ABC subunit B [Subdoligranulum variabile DSM 15176]
          Length = 679

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/665 (50%), Positives = 458/665 (68%), Gaps = 7/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++  + P+GDQP AI  L++GI   +  Q LLGVTGSGKTFTMA +I    RP +++ 
Sbjct: 5   FHLKAPFQPTGDQPQAIEALVQGIEEGDDAQTLLGVTGSGKTFTMANIIARCNRPTLILE 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LA+Q+ +E ++FFP +AVEYFVSYYDYYQPEAY+P TDTYIEK+S+IN++IDR+RH
Sbjct: 65  PNKTLASQICTEMRSFFPDDAVEYFVSYYDYYQPEAYIPSTDTYIEKDSAINDEIDRLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L E+ + I+V+SVSCIY +G    Y  M++ L+ G  +E+ EL + LVK QY+R 
Sbjct: 125 SATAALSEQRNVIIVASVSCIYSLGDPIDYRSMVISLRPGMQMERDELCNRLVKLQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  IR  FRV GD+++I  ++ ++ A RV  FG++I+ I EF PLTGQ    V  + I+
Sbjct: 185 DMNFIRNKFRVKGDTVDIHLAYNDEYAIRVEFFGDEIDRIIEFDPLTGQHKNVVRHVAIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+     +   +  I  E++ ++ +  +EG+LLEAQR++QR  YD+EML+  G C+
Sbjct: 245 PASHYIVGPEKMKEGLAKIALEMEEQVKKFTEEGKLLEAQRIQQRTNYDMEMLQEVGMCK 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  L+GR PG  P TL +Y P+D LL VDESHV +PQI GMY GD+ RK TL EY
Sbjct: 305 GIENYSAVLSGRAPGSTPTTLLDYFPDDFLLMVDESHVMLPQIRGMYGGDYSRKKTLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRFEE+       I VSATPG +E +     + EQ+IRPTGL+DP + 
Sbjct: 365 GFRLPSAFDNRPLRFEEFEKKVHQKIFVSATPGEYERQHS-SRVAEQVIRPTGLLDPLIM 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q+ED+  EI     +G R L+T LT +MAEDLT+YL E  ++ +YMH EV T E
Sbjct: 424 VRPVEGQIEDLLGEIRQRIDRGERALVTTLTVKMAEDLTDYLEEHGVKTKYMHHEVDTFE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII+DLR+G  DV+VGINLLREGLD+PE  L+AILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 484 RMEIIKDLRVGAIDVIVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  V++YAD +T S++ AI ET RRR  Q  +N++H I P+++ + I + ++  + E+
Sbjct: 544 NANGVVLMYADEVTPSMERAIMETERRRAIQDAYNQEHGITPKTIVKAIGDGLEISMSEE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
                 +   +Q  +S+ + +  ++ + K+M  AA  L FE AA++RDEI RL+      
Sbjct: 604 ------NKRMRQHRMSRAERQQTIERMTKEMKEAARLLQFELAAQLRDEIARLERGEDPT 657

Query: 801 GLDDS 805
             D S
Sbjct: 658 AADTS 662


>gi|206890241|ref|YP_002248529.1| excinuclease ABC, B subunit [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|254764917|sp|B5YJW4|UVRB_THEYD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|206742179|gb|ACI21236.1| excinuclease ABC, B subunit [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 671

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/671 (53%), Positives = 479/671 (71%), Gaps = 8/671 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ T + P GDQP AI QL++GI    K Q+LLGVTGSGKTFT+A VIE + +P +
Sbjct: 1   MGNFKIYTSFKPKGDQPKAIKQLVEGIKKGYKHQVLLGVTGSGKTFTIANVIEKVNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLY E K  FP+NAVEY+VSYYDYYQPEAY+P TDTYIEK++ IN+ IDR
Sbjct: 61  VIAHNKTLAAQLYGELKELFPYNAVEYYVSYYDYYQPEAYIPETDTYIEKDALINDDIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSAT S+L R D IVV+SVSCIYGIGS + Y  M V L+ G   E+  +L  LV+  Y
Sbjct: 121 MRHSATLSVLTRQDVIVVASVSCIYGIGSPDDYMSMHVTLEEGMKTERDAMLKKLVEILY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R +    RG FRV GD ++IF SH  D A+RV  F ++I+ I E  PLTG + + ++ I
Sbjct: 181 IRAEEEFRRGAFRVRGDVVDIFASHCLDKAYRVEFFDDEIDAIYEIDPLTGSRQKRLQRI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I  NSH+VTP P L  A++ I+EEL+ R+   ++ G  L A+R+E+R  +D+E+L   G
Sbjct: 241 FIPPNSHWVTPEPRLKKALETIEEELQERIKYFKERGEELFAERIEKRTRFDMELLSQFG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PE--DSLLFVDESHVTIPQISGMYRGDFH 492
            C  IENYSR+L+GR PGEPP TL +YI   P   D L  +DESHVT+PQI GMY GD  
Sbjct: 301 HCHGIENYSRHLSGRLPGEPPFTLIDYIYAGPSKGDFLTVIDESHVTVPQIGGMYEGDRS 360

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL EYGFRLPS +DNRPL F+E+       I VSATPG +E+E+  G IVEQIIRPT
Sbjct: 361 RKQTLVEYGFRLPSALDNRPLTFKEFEHRMNYVIYVSATPGDYEIEKSGGRIVEQIIRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +E+R A  QVED+ +EI+    +G R+L+T +TK+MAEDLT+Y     I+ +Y+
Sbjct: 421 GLVDPKIEVRPATNQVEDLLEEIHKRVSRGERVLVTTITKKMAEDLTDYYTTVGIKAKYL 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++ TLER+EI++DLRLGKFDVL+G+NLLREGLD+PE  LVAI DADKEGFLRS+ SLI
Sbjct: 481 HSDIDTLERVEILKDLRLGKFDVLIGVNLLREGLDLPEVSLVAIFDADKEGFLRSERSLI 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QT GRA+RN+N  VI YADT+T S++ AI+ET RRRE Q+++NKK+ I+P++VK KI ++
Sbjct: 541 QTAGRASRNINGTVIFYADTVTDSMKKAIEETERRREIQMKYNKKNGISPETVKSKIKDI 600

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           +  I  +D  T ++    ++ +   +  +  +K L ++M  AA+NL FE+AA IRD+I +
Sbjct: 601 LSSIYEKDYVTVDV---VKEEAEEYELNEETIKKLEQEMKHAAENLEFEKAAEIRDKIFK 657

Query: 793 LKSSPYFQGLD 803
           +K      G+ 
Sbjct: 658 IKEKMLKLGMK 668


>gi|54023870|ref|YP_118112.1| excinuclease ABC subunit B [Nocardia farcinica IFM 10152]
 gi|54015378|dbj|BAD56748.1| putative excision nuclease ABC subunit B [Nocardia farcinica IFM
           10152]
          Length = 721

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/717 (50%), Positives = 485/717 (67%), Gaps = 28/717 (3%)

Query: 114 NPLLKNGKIWTPHRSWSI-NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQL 172
             +   G+    H  +       +    FQ+ +++ P+GDQPAAI +L + I + EK  +
Sbjct: 5   TEIPAEGETPLAHSEFRPVGAIERAEGRFQVVSEHQPAGDQPAAIDELERRIKAGEKDVV 64

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           LLG TG+GK+ T A +IE +QRP +VMAPNK LAAQL +E +   PHNAVEYFVSYYDYY
Sbjct: 65  LLGATGTGKSATTAWLIERLQRPTLVMAPNKTLAAQLANELREMLPHNAVEYFVSYYDYY 124

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           QPEAY+ +TDTYIEK+SSIN+ ++R+RHSAT SLL R D +VV+SVSCIYG+G+ +SY  
Sbjct: 125 QPEAYIAQTDTYIEKDSSINDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYLD 184

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             VQL++G  V++  LL  LV  QY R D+   RG+FRV GD++EI PS+ E++A R+  
Sbjct: 185 RSVQLEVGTEVDRDALLRLLVDVQYTRNDLSFTRGSFRVRGDTVEIIPSY-EELAVRIEF 243

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG++IE +   +PLTG  +R V+T++I+  +HYV     +  A++ I++EL+ RL ELE+
Sbjct: 244 FGDEIEALYYLHPLTGDVVRKVDTLRIFPATHYVAGPDRMERAVRDIEQELEERLAELER 303

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           +G+LLEAQRL  R  YDLEM+   G C  IENYSR++ GR  G  P TL +Y PED LL 
Sbjct: 304 QGKLLEAQRLRMRTQYDLEMIRQVGFCSGIENYSRHIDGRPAGSAPATLLDYFPEDFLLV 363

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           +DESHVT+PQI GMY GD  RK  L EYGFRLPS +DNRPL +EE+       + +SATP
Sbjct: 364 IDESHVTVPQIGGMYEGDMSRKRNLVEYGFRLPSAVDNRPLTWEEFADRIGQVVYLSATP 423

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
           G +EL +  G +VEQ+IRPTGLVDP V ++  + Q++D+  EI L  ++  R+L+T LTK
Sbjct: 424 GPYELGRTGGEVVEQVIRPTGLVDPKVVVKPTKGQIDDLVHEIRLRTERDERVLVTTLTK 483

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           +MAEDLT+YL    +RVRY+HSE+ TL R+E++R LRLG++DVLVGINLLREGLD+PE  
Sbjct: 484 KMAEDLTDYLLGLGVRVRYLHSEIDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVS 543

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           LVAILDADKEGFLRS TSLIQTIGRAARNV+ +V +YAD IT S+Q AI+ET RRR KQ+
Sbjct: 544 LVAILDADKEGFLRSSTSLIQTIGRAARNVSGEVHMYADKITDSMQFAIEETERRRAKQI 603

Query: 713 EHNKKHNINPQSVKEKIMEVIDPILLE------------------------DAATTNISI 748
            +N+K  I+P+ +++KI +++D +  E                         A +  +  
Sbjct: 604 AYNEKMGIDPKPLRKKIADILDQVYREADEVEVGGSGRNASRGRRAQGEPGRAVSAGVIE 663

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
                S+ + +    +  L  QM  AA  L FE A R+RDEI  LK     +G+D +
Sbjct: 664 GRDVKSMPRAELADLVTELTAQMMNAARELQFELAGRLRDEIADLKKE--LRGMDAA 718


>gi|218438740|ref|YP_002377069.1| excinuclease ABC subunit B [Cyanothece sp. PCC 7424]
 gi|226695481|sp|B7KC96|UVRB_CYAP7 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|218171468|gb|ACK70201.1| excinuclease ABC, B subunit [Cyanothece sp. PCC 7424]
          Length = 665

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/666 (51%), Positives = 460/666 (69%), Gaps = 6/666 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +Q  +  +GDQP AIAQL+  I    + Q LLG TG+GKTFT+A  IE + +P +
Sbjct: 1   MNLFHLQAPFQATGDQPQAIAQLVNSIEKGNRFQTLLGATGTGKTFTIAATIEKIGKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID 
Sbjct: 61  VLAHNKTLAAQLCNELRQFFPENAVEYFISYYDYYQPEAYIPVSDTYIEKSASINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D +VV+S+SCIYG+G    Y +  + L++G  + Q++LL  LV  QY
Sbjct: 121 LRHSATRSLFERRDVVVVASISCIYGLGMPSEYLKASIGLEVGKEINQRQLLRDLVSVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RG FR+ GD +E+ P++ ED   RV  FG++I+ I    P+TG  ++++E +
Sbjct: 181 SRNDLDLQRGRFRLRGDVLELVPAY-EDRVIRVEFFGDEIDAIRYLDPVTGNSLQSLERV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP   L  A + I+ EL+ RL ELEK+G+LLEAQRL QR  YDLE+L   G
Sbjct: 240 NIYPARHFVTPDDQLEAACQGIELELEDRLEELEKQGKLLEAQRLGQRTRYDLELLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSRYL GR PG+PP  L +Y P+D LL +DESHVTIPQ+ GMY GD  RK  L
Sbjct: 300 YCNGVENYSRYLAGREPGQPPECLIDYFPKDWLLVIDESHVTIPQLRGMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+ EE+       + VSATPG+WE+EQ QG ++EQIIRPTG++DP
Sbjct: 360 IEHGFRLPSAADNRPLKAEEFWEKVNQCVFVSATPGNWEIEQSQGQVIEQIIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    QV+D+  EI    ++  R+L+T LTKRMAEDLTEY  ER ++V+Y+HSE+ 
Sbjct: 420 EIFVRPTEGQVDDLLGEIKQRIKRKERVLITTLTKRMAEDLTEYFQERGVKVQYLHSEIS 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEI+++LR G+FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEILQNLREGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK----EKIMEVI 733
           AAR++  + ILYAD +T S+  A++ET RRR  Q+ HNK+H I PQ +       I+  +
Sbjct: 540 AARHIQGQAILYADNLTDSMIKAMEETERRRNIQMAHNKRHGITPQPIVTRSSNAILSFL 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           D     +A       D Q   L  +K    +  L +QM  AA  L FEEAA+ RD I+ L
Sbjct: 600 DISRRLNAQQLEKVYD-QADELPLEKVPELIGQLEEQMKEAAKKLEFEEAAKYRDRIQHL 658

Query: 794 KSSPYF 799
           +     
Sbjct: 659 RDKLLG 664


>gi|237756940|ref|ZP_04585409.1| excinuclease ABC subunit B [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237690900|gb|EEP60039.1| excinuclease ABC subunit B [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 663

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/657 (51%), Positives = 467/657 (71%), Gaps = 3/657 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F +++++ P+GDQP AI QL + + S    Q+LLG TG+GKTFT+A +IE   +P ++
Sbjct: 4   KIFNLKSNFKPTGDQPKAIKQLYENLISGVNQQVLLGATGTGKTFTIANLIEKYGKPTLI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           ++ NK LAAQLY E K  FP NAVEYFVSYYDYYQPEAY+P+ D YIEK+S+IN+ IDR+
Sbjct: 64  LSHNKTLAAQLYREIKELFPDNAVEYFVSYYDYYQPEAYIPQKDLYIEKDSAINDAIDRL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSATRSL+ER D IVV+SVSCIYG+G+ E Y ++ +QL +G  ++++ LL  LV+ QY+
Sbjct: 124 RHSATRSLIERPDTIVVASVSCIYGLGTPEFYEKLRLQLYVGMEIDRQTLLRKLVELQYQ 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D  + RGTF+V GD++EI P++ ED+  RV  FG++IE ISE         R ++   
Sbjct: 184 RDDFSLKRGTFKVKGDTVEILPAYTEDIIVRVEFFGDEIESISEIDIFNRDVKRKLDRTV 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SHYV PRP +  A+K I+++L++ + E ++ G+ +EA RL QR  YD+EM+   G+
Sbjct: 244 IFPASHYVIPRPDMLEAIKQIQKDLEIEVEEFKRAGKEIEANRLWQRTNYDIEMMLELGT 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSRY  GR PGEPP TL +Y PED LL VDESHVTIPQI  MY GDF RK  L 
Sbjct: 304 CKGIENYSRYFDGRKPGEPPYTLIDYFPEDFLLIVDESHVTIPQIKAMYNGDFSRKENLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YG+R+ S  DNRPL+FEE+       I VSATP  WE+++ +G+IVEQIIRPTGL+DP 
Sbjct: 364 KYGWRMKSAYDNRPLKFEEFVQKIQKAIYVSATPADWEIKRSKGVIVEQIIRPTGLLDPI 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++    Q++D+ +EI    ++  R ++  LTK+MAE L +YL ER I+  Y+HSE+ T
Sbjct: 424 IEVKKTGGQIDDLINEIWKVKERNERAIVITLTKKMAEHLADYLTEREIKAIYLHSEIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER++II++ R GK+DV+VG+NLLREGLD+PE  LVA LDADK+GFLRSKT+LIQTIGRA
Sbjct: 484 IERVKIIKEFREGKYDVIVGVNLLREGLDMPEVSLVAALDADKQGFLRSKTALIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN K ILYAD +T ++   I+ET RRR+ Q E+NKKH I P++V +++ ++I    L
Sbjct: 544 ARNVNGKAILYADKLTPAMIETIEETNRRRKIQEEYNKKHGITPKTVSKEVKDLIS---L 600

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           E+     I         S++     ++ L KQM   A N  FE+AA IRD++++LK 
Sbjct: 601 EELGILEIYNQLPDDINSEEDLMKKIEQLEKQMWDYAKNWEFEKAAEIRDQLEKLKK 657


>gi|226227359|ref|YP_002761465.1| UvrABC system protein B [Gemmatimonas aurantiaca T-27]
 gi|259710327|sp|C1A4H0|UVRB_GEMAT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226090550|dbj|BAH38995.1| UvrABC system protein B [Gemmatimonas aurantiaca T-27]
          Length = 700

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/666 (52%), Positives = 471/666 (70%), Gaps = 8/666 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++   + P+GDQP AI +L  G+H  +++Q LLGVTGSGKT TMA VI    RP +V
Sbjct: 3   APFRLHAPFAPAGDQPRAITELSSGLHRGDRIQTLLGVTGSGKTMTMANVIADWGRPTLV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           ++ NK LAAQLY E K+FFP+NAVEYF+SYYDYYQPEAYVP +DTYIEK++SINE IDR+
Sbjct: 63  LSHNKTLAAQLYGELKSFFPNNAVEYFISYYDYYQPEAYVPSSDTYIEKDASINEDIDRL 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R  AT SL+ER+D ++VS+VS IYG+G    Y + +V L  G  + + ++L +LV  QY 
Sbjct: 123 RLRATSSLMERDDVVIVSTVSAIYGLGDPVQYRERMVALSRGQQIARDDILRALVGIQYL 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RGTFRV GD++EI P++ E+ A R+ ++G++IE IS+  P+TG+ I  +E + 
Sbjct: 183 RNDVAFERGTFRVRGDTVEILPAY-EEQAVRIELWGDEIERISKIDPVTGETIAALERMA 241

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY   H++T RPT+  A   I++EL  RL EL   G+LLEAQRLEQR  +DLEML   G+
Sbjct: 242 IYPAKHFITNRPTIERASMAIRDELATRLAELRMAGKLLEAQRLEQRTQFDLEMLMEIGT 301

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+++GR  GE P  L +Y P+D L+ VDESHVT+PQI  MY GD  RK TL 
Sbjct: 302 CAGIENYSRHISGREAGERPACLLDYFPDDYLVVVDESHVTLPQIRAMYNGDRARKLTLV 361

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL F+E+  L P  + VSATPG  EL+  +G++VEQ+IRPTGL+DP 
Sbjct: 362 DYGFRLPSALDNRPLVFDEFMSLVPRLVNVSATPGELELQLSEGVVVEQVIRPTGLLDPV 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R  + QV+D+  EI    ++G R+L+T LTKRM+EDLT+YL +  +RVRYMHS++  
Sbjct: 422 LEVRPVKGQVDDLLHEIRARERRGERVLVTTLTKRMSEDLTDYLQQMGVRVRYMHSDIDA 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EI+R LRLG+FDVLVGINLLREGLD+PE  LVAILDAD+EGFLRS  SLIQTIGRA
Sbjct: 482 IERMEIVRGLRLGEFDVLVGINLLREGLDMPEVSLVAILDADQEGFLRSDRSLIQTIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV------ 732
           ARN++   ILY D IT S+Q AIDETTRRR  Q EHN+ H I P+ V + + EV      
Sbjct: 542 ARNLHGMAILYGDRITGSMQRAIDETTRRRTIQREHNEAHGIVPRGVTKSVDEVRFITRV 601

Query: 733 -IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
               +  E  A     + ++    S+++ +  +  L   M  AA  L+FE AAR+RD++ 
Sbjct: 602 ADARVEREGEAPAPRRLASESAPRSREELETLVGELEIAMREAAVALDFEAAARLRDQLF 661

Query: 792 RLKSSP 797
            ++++ 
Sbjct: 662 EVRTAL 667


>gi|172040811|ref|YP_001800525.1| excinuclease ABC subunit B [Corynebacterium urealyticum DSM 7109]
 gi|171852115|emb|CAQ05091.1| excinuclease ABC, subunit B [Corynebacterium urealyticum DSM 7109]
          Length = 710

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/698 (49%), Positives = 477/698 (68%), Gaps = 22/698 (3%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
               +    +    F++ ++Y P+GDQPAAIA+L + ++  E+  +L+G TG+GK+ T A
Sbjct: 14  EFRPVGEVERSDAKFEVISEYEPAGDQPAAIAELDERLNRGERDVVLMGATGTGKSATAA 73

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            +IE  QRP +VMAPNK LAAQL +E ++  P+NAVEYFVSYYDYYQPEAY+ +TDTYIE
Sbjct: 74  WLIEQQQRPTLVMAPNKTLAAQLANELRSLLPNNAVEYFVSYYDYYQPEAYIAQTDTYIE 133

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           K+SSIN+ ++R+RHSAT +LL R D +VVSSVSCIYG+G+ +SY    V L++ + V++ 
Sbjct: 134 KDSSINDDVERLRHSATSALLSRRDVVVVSSVSCIYGLGTPQSYLDRSVVLRVDEEVDRD 193

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           + L  LV  QY R D+   RG FRV GD+++I P++ E++A RV  FG+D++ +   +PL
Sbjct: 194 QFLRLLVDIQYDRNDVSFTRGAFRVKGDTVDIIPAY-EELAVRVEFFGDDVDALYYIHPL 252

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG  IR V+ ++I+  +HYV     +  AM+ I+EEL  RL +LE  G+LLEAQRL  R 
Sbjct: 253 TGDVIREVDELRIFPATHYVAGPERMEKAMQAIREELAERLEDLENRGKLLEAQRLRMRT 312

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
            YDLEM++  G    IENYSR++ GR  G  P TL +Y PED L  +DESHVT+PQI GM
Sbjct: 313 EYDLEMIQQVGFTSGIENYSRHIDGRPAGSAPATLIDYFPEDFLTIIDESHVTVPQIGGM 372

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           + GD  RK  L E+GFRLPS +DNRPL +EE++  +   + +SATPG +E+   QG  VE
Sbjct: 373 FEGDMSRKRNLVEHGFRLPSALDNRPLTWEEFDDRKGQCVYMSATPGDYEIAAAQGEFVE 432

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q+IRPTGLVDP VE+R    Q++D+ +EI     +  R+L+T LTKRMAEDLT+YL E  
Sbjct: 433 QVIRPTGLVDPKVEVRPTEGQIDDLIEEIRKRTDKDERVLVTTLTKRMAEDLTDYLLEHG 492

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           +RVRYMHS++ TL+R+E++R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLR
Sbjct: 493 VRVRYMHSDIDTLKRVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLR 552

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S  SLIQTIGRAARNV+ +VI+YAD +T+S+  AIDET RRR KQ+ +N++H I+PQ ++
Sbjct: 553 STRSLIQTIGRAARNVSGEVIMYADNVTESMSNAIDETERRRAKQIAYNEEHGIDPQPLR 612

Query: 727 EKIMEVIDPILL-------------------EDAATTNISIDAQQLSLSKKKGKAHLKSL 767
           +KI +++D +                      +           +  +++ + +  ++ L
Sbjct: 613 KKIADILDQVEEFSEGYGEPGSEVAGSASTGVEGDMATFGRAEDRGDMARPQLEKLIEGL 672

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             QM  +A  L FE A R+RDEI  L      +G+ ++
Sbjct: 673 TAQMKESARELKFELAGRLRDEIADLNKE--LRGMKEA 708


>gi|258404926|ref|YP_003197668.1| excinuclease ABC subunit B [Desulfohalobium retbaense DSM 5692]
 gi|257797153|gb|ACV68090.1| excinuclease ABC, B subunit [Desulfohalobium retbaense DSM 5692]
          Length = 665

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/661 (51%), Positives = 455/661 (68%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ TD  P GDQP AI +L   + +    Q+LLGVTGSGKTFT+A V+  + RP +VMA
Sbjct: 5   FQLVTDMVPKGDQPKAIEKLCANLEAGVSDQVLLGVTGSGKTFTVANVVARLNRPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEFK  FP+NAVEYFVSYYDYYQPEAY+P +DTYIEK+SSINE ID++RH
Sbjct: 65  PNKTLAAQLYSEFKELFPNNAVEYFVSYYDYYQPEAYLPHSDTYIEKDSSINEDIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R D ++V+SVSCIYG+GS E Y +M+V + +G ++   +L+S LV+ QY+R 
Sbjct: 125 AATHALLTRRDVLIVASVSCIYGLGSPEYYEKMVVPVHVGQNLAMDQLMSRLVEIQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD +E+ P++  + A R+  FG++I+ + E  PLTG+ +   E   I+
Sbjct: 185 DYDFHRGTFRVRGDVLELIPAYRHERALRIEFFGDEIDALYETDPLTGEVLGPQEKALIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV+ +  L  A+  I++EL+ RL    +E RL+EAQRLEQR   DLEM+E  G C 
Sbjct: 245 PGSHYVSDQENLKRAIDDIRDELRARLTWYREENRLVEAQRLEQRTQLDLEMIEELGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR P  PP  L +Y P D LLF+DESHV++PQI GM+ GD  RK TL ++
Sbjct: 305 GIENYSRHLDGRAPESPPSCLLDYFPSDFLLFLDESHVSVPQIGGMFNGDRSRKQTLVDF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+      T+ VSATPG+WE ++  G I+EQ+IRPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLSFDEFLKRLNQTVYVSATPGNWERDRASGEIIEQVIRPTGLLDPQVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E      +  R+L+T LTKR+AEDLTE+L+ R +  RYMHS++ TLE
Sbjct: 425 VRPTGGQMDDLLAECRQRMDKDERVLITTLTKRLAEDLTEFLHSRGVPSRYMHSDIDTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII+ LR G F  LVGINLLREGLD+PE  LVA+LDADKEGFLRS  SLIQT GRAAR
Sbjct: 485 RVEIIQSLRRGDFHALVGINLLREGLDLPEVSLVAVLDADKEGFLRSARSLIQTFGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  V+LYAD  T +++ A+DE+ RRR  Q   N +H I P+S++++    +     E 
Sbjct: 545 NRNGCVLLYADKKTPAMREAMDESHRRRSLQEAFNLEHGITPESIRKRSGHALAHAGKEQ 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
           +     +          +K +  +  L ++M  AA +L FE AA +RDE +RL+ +    
Sbjct: 605 SEMAKAAETTSSYGSDPQKLEKAIARLEREMRQAAKDLAFERAASLRDEAQRLRQTLVEM 664

Query: 801 G 801
           G
Sbjct: 665 G 665


>gi|126697177|ref|YP_001092063.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9301]
 gi|189037985|sp|A3PFD7|UVRB_PROM0 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|126544220|gb|ABO18462.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str. MIT
           9301]
          Length = 679

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/676 (50%), Positives = 466/676 (68%), Gaps = 17/676 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  +++Q  Y P+GDQP AI +L+KG+++ ++ Q LLG TG+GKTFT+A VI+   RPA+
Sbjct: 1   MNNYKLQAPYEPNGDQPEAIKKLVKGVNTGKEFQTLLGATGTGKTFTIANVIQQTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G S+  +  L SLV+ QY
Sbjct: 121 LRHSATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFEVGKSINLRSYLRSLVENQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI I RG FR+ GD +EI P++ ED   R+ +FG+++E I    P TG+ + ++E +
Sbjct: 181 TRNDIEITRGRFRIKGDVLEIGPAY-EDRLIRIELFGDEVEAIRYVDPTTGEILESLEQV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+VTP+  L +A+  I+ ELK +L +   EG+LLEAQRLEQR  YDLEML+  G
Sbjct: 240 SVYPAKHFVTPKERLESAISAIRSELKTQLDKFTYEGKLLEAQRLEQRTKYDLEMLKEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L+GR  G PP  L +Y P+D LL VDESHVT PQ+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLSGREEGSPPECLIDYFPKDWLLVVDESHVTCPQLHAMYNGDQSRKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+      T+ +SATPG WEL+QC G  +EQ+IRPTG++DP
Sbjct: 360 IDHGFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWELDQCDGEFIEQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R +  Q+ED+  EI + A++  R+L+T LTKRMAEDLT++L E  +RVRY+HSE+ 
Sbjct: 420 VIDVRPSEGQIEDLLSEIRIRAEKNQRVLVTTLTKRMAEDLTDFLSENKVRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLR+G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V    +LYAD  T S++ AI ET RRR  Q ++N+ + I P+   +KI   I   L
Sbjct: 540 AARHVEGVALLYADNFTDSMKRAISETERRRTIQKKYNQVNGITPKPAGKKIENSILSFL 599

Query: 738 LEDAATTNISIDAQQLSLSK----------------KKGKAHLKSLRKQMHLAADNLNFE 781
                     +    +++                  ++    ++ L  +M  AA  LNFE
Sbjct: 600 ELSRKLDAGGLSKDLINIVNNKTDAILGSSDNQCLLEELPDLIEKLEIKMKDAAKELNFE 659

Query: 782 EAARIRDEIKRLKSSP 797
           EAA +RD IK+L+   
Sbjct: 660 EAANLRDRIKKLRQKL 675


>gi|312793615|ref|YP_004026538.1| excinuclease ABC subunit B [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180755|gb|ADQ40925.1| excinuclease ABC, B subunit [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 661

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/660 (56%), Positives = 487/660 (73%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +D+ P+GDQP AI  L +GI   EK Q LLGVTGSGKTFTMAKVIE +QRP +
Sbjct: 1   MKKFKLVSDFKPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSINE+ID+
Sbjct: 61  VLAHNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIY +GS E Y  + + L++G   ++ E++  L++ QY
Sbjct: 121 LRHSATSALFERRDVIIVASVSCIYSLGSPEDYLNLTISLRLGMIKDRDEVIRELIRMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RG FRV GD +E+FP+   D A R+  FG++IE I+EF  +TG+ I     +
Sbjct: 181 ERNDIDFRRGRFRVRGDVLEVFPASNTDRAIRIEFFGDEIERITEFDVVTGEVIGRRNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYVT    L  A+K I+EEL+ RL EL   G+L+EAQRLEQR  YD+EML+  G
Sbjct: 241 AIFPASHYVTTAEKLKRAIKSIEEELEQRLKELRSMGKLVEAQRLEQRTRYDIEMLQEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSR+LTGR+PG PP TL +Y P+D ++F+DESHVTIPQ+  MY GD  RK TL
Sbjct: 301 FCKGIENYSRHLTGRSPGSPPYTLLDYFPKDFIMFIDESHVTIPQVRAMYNGDKARKDTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL FEE+       I VSATPG +EL++    IVEQIIRPTGLVDP
Sbjct: 361 VEYGFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYELKKS-SRIVEQIIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+   + Q++ +  EI    ++  R+L+T LTK+MAE LTEYL +  IRVRYMHS++ 
Sbjct: 420 EIEVHPVQGQIDHLIGEIRKRVEKNQRVLVTTLTKKMAESLTEYLKDVGIRVRYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ KVI+YAD IT ++Q AIDET RRR+ Q+E+N+KH I PQ+V++ I ++I+  +
Sbjct: 540 AARNVDGKVIMYADRITNAMQRAIDETNRRRKIQIEYNQKHGIIPQTVRKGIRQIIEATV 599

Query: 738 LEDAATTNISIDAQQ--LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                     +  ++   +++K++ + ++K L ++M   A  L FE+AA++RD+I  LK 
Sbjct: 600 SVAEEEEKYEVVEKEIVENMTKEEIEEYIKELEQEMKKFAIELEFEKAAKVRDKIFELKK 659


>gi|93005567|ref|YP_580004.1| excinuclease ABC subunit B [Psychrobacter cryohalolentis K5]
 gi|92393245|gb|ABE74520.1| Excinuclease ABC subunit B [Psychrobacter cryohalolentis K5]
          Length = 662

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/660 (54%), Positives = 475/660 (71%), Gaps = 8/660 (1%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           M T++ P+GDQP AI +L+ GI++    QLLLGVTGSGKT+TMAKVI   QRP I+MA N
Sbjct: 1   MVTEFEPAGDQPQAIKKLVNGINAGMDEQLLLGVTGSGKTYTMAKVISETQRPTIIMAHN 60

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYV  +DT+IEK+S+IN+ ID+MR SA
Sbjct: 61  KTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDSAINDHIDQMRLSA 120

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           TR+LLER D I+V+SVSCIYG+G  ESY +M++ + +GD +++   +  LV+ QY R ++
Sbjct: 121 TRALLERRDAIIVASVSCIYGLGDPESYLKMLLHVVVGDKIDRTATIKRLVEMQYTRNEL 180

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
              RGT+R+ G+ ++I+P+  E +A RV +F N++E+I+ F PLTG+ +R V  I IY  
Sbjct: 181 DFGRGTYRLRGELLDIYPAESEQLAVRVHLFDNEVEKITWFDPLTGKTVRTVPRITIYPK 240

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           SHYVTPR  L  A   I+ EL+ RL    +  +L+EAQRL++R  YDLEM++  G C  I
Sbjct: 241 SHYVTPRNKLEAASHTIRAELEPRLEYFRENNKLIEAQRLKERTQYDLEMIQQLGYCNGI 300

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYS++L+GR  GE PPTLF+YIPED+LLF+DESHVT+ QI  MY+GD  RK  L  YGF
Sbjct: 301 ENYSQHLSGRPSGEAPPTLFDYIPEDALLFLDESHVTVSQIGAMYKGDRSRKENLVNYGF 360

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPS M+NRP++FEEW  ++P TI VSATP  +ELE  +  +VEQ++RPTGL+DP +EIR
Sbjct: 361 RLPSAMNNRPMKFEEWERIKPKTIYVSATPALYELEHSEQ-VVEQVVRPTGLIDPEIEIR 419

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
              TQV+DV  EI    ++  R+L+T LTKRM+EDLT YL E +++V Y+HS++ TLER+
Sbjct: 420 PVLTQVDDVLSEITKRREKDERVLITTLTKRMSEDLTSYLKEYDVKVAYLHSDIDTLERM 479

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +II +LR G  DVLVGINLLREGLD+PE  LVAI DADKEGFLRS+ +LIQTIGRAAR++
Sbjct: 480 QIIHELRTGVHDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERALIQTIGRAARHI 539

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           N K ILYAD IT S+Q AIDET RRREKQ+  N +HNI P   +  I + ID     DA 
Sbjct: 540 NGKAILYADRITNSMQKAIDETDRRREKQVAFNLEHNITPTGARRSITDKIDTGDDHDAN 599

Query: 743 -------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                   +N+      +  S       +  L K M   + +L FE+AA+ RD++  LK+
Sbjct: 600 DNQMIPIKSNLPDVDISILRSPDLLAKEINRLEKLMKQMSRDLKFEDAAKTRDKVLELKA 659


>gi|288560344|ref|YP_003423830.1| excinuclease ABC B subunit UvrB [Methanobrevibacter ruminantium M1]
 gi|288543054|gb|ADC46938.1| excinuclease ABC B subunit UvrB [Methanobrevibacter ruminantium M1]
          Length = 651

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/658 (53%), Positives = 459/658 (69%), Gaps = 10/658 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++++ Y P GDQP AI  L  GI      Q LLGVTGSGKT+TMA +I+ +Q+P +
Sbjct: 1   MKEFKLKSPYKPLGDQPQAIESLSNGIKEGFHEQTLLGVTGSGKTYTMANIIQNVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVPRTDT+I+KE+SINE ID 
Sbjct: 61  IISHNKTLAAQLYEEFKVFFPDNAVEYFVSYYDYYQPEAYVPRTDTFIDKEASINEDIDI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSAT+SLL R+D IVVSSVSCIYGIGS E Y +    + +GD  ++ ++L  L+  QY
Sbjct: 121 MRHSATQSLLSRDDVIVVSSVSCIYGIGSPEDYGEFAFSINVGDIYDRGDILRKLIFMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RG FRV GD IEI P H      R+ +FG++I+ IS   P+TG +  ++   
Sbjct: 181 ERNDIAFERGQFRVRGDVIEINPVHGTP-PIRIELFGDEIDAISLINPVTGMREESINRY 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+   H+V     ++ A+K I+ EL+ RL EL  EG+ LEAQRLEQR  +DLEML   G
Sbjct: 240 VIFPAKHFVVGADRMDQALKDIEAELQSRLNELNLEGKYLEAQRLEQRTRFDLEMLREMG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYS +L+GRN G+ P +L +Y P+D L  +DESHVT+PQI GMY GD  RK TL
Sbjct: 300 YCPGIENYSMHLSGRNWGDMPYSLLKYFPDDYLTIIDESHVTVPQIRGMYNGDRARKETL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS  +NRPLRF+E+   +   + VSATPG +EL + +  +VEQIIRPTGLVDP
Sbjct: 360 VNYGFRLPSAKENRPLRFDEFEASQNQVLYVSATPGPYELSRSKN-VVEQIIRPTGLVDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + IR  + QVED+  E+    +   RIL+T LTKRMAEDLT+Y  +  I+VRY+HSE+ 
Sbjct: 419 KITIRPVKGQVEDLLGEVRRKVEHDQRILVTTLTKRMAEDLTDYYAKIGIKVRYLHSEID 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+EII DLR G+FDVLVG+NLLREGLD+PE GLVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 479 TLERVEIIDDLRRGEFDVLVGVNLLREGLDLPEVGLVAILDADKEGFLRSETSLIQTIGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ +V++Y D +T S++ A+D T +RR+ Q+ +N+K+NI P++ +          L
Sbjct: 539 AARNVDGEVLMYVDEMTDSVRNAVDITNKRRKLQMAYNEKYNITPKTTQR--------TL 590

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            E               + K + K  +K L  +M  AA+NL FE+AA +RD+I  LKS
Sbjct: 591 KEKKLADRAPSRDDLRGMPKDELKLLIKDLEAEMREAANNLEFEKAASLRDQIVALKS 648


>gi|124021794|ref|YP_001016101.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9303]
 gi|189037987|sp|A2C5S6|UVRB_PROM3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|123962080|gb|ABM76836.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str. MIT
           9303]
          Length = 679

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/677 (51%), Positives = 465/677 (68%), Gaps = 17/677 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  + ++  Y P GDQP AIA+L++G++  ++ Q LLG TG+GKTFT+A +I    RPA+
Sbjct: 1   MPKYHLKAPYSPKGDQPTAIARLVEGVNQGQRYQTLLGATGTGKTFTIANLIAQTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +EF+ FFP N+VEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNEFREFFPDNSVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ERND IVV+S+SCIYG+G    Y +  V+ K+G+++  +  L  LV  QY
Sbjct: 121 LRHSATRSLFERNDVIVVASISCIYGLGIPSEYLKAAVKFKVGETLNLRSSLRELVDNQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D  I RG FRV GD +EI P++ ED   R+ +FG+++E I    P TG+ ++++E I
Sbjct: 181 SRNDFDITRGRFRVRGDVLEIGPAY-EDRLVRIELFGDEVEAIRYLDPTTGEILQSLEAI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP+  LN A++ I++EL+ RL  L ++G+LLEAQRLEQR  YDLEML   G
Sbjct: 240 NIYPAKHFVTPKERLNVAVQAIRDELRERLQVLNEQGKLLEAQRLEQRTAYDLEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L GR+ G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLAGRSAGTPPECLIDYFPDDWLLVVDESHVTCSQLKAMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+ EE+      T+ VSATPG WEL Q  G + EQ+IRPTG++DP
Sbjct: 360 IEHGFRLPSAADNRPLKSEEFWRKARQTVFVSATPGDWELTQSDGQLAEQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R  + QV+D+  EI + A++  R+L+T LTKRMAEDLT+YL E ++RVRY+HSE+ 
Sbjct: 420 LVEVRPTQGQVDDLLAEIRIRAKKQERVLITTLTKRMAEDLTDYLAENDVRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LV ILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V+   +LYAD +T S+  AI ET RRRE Q  +N+ + I P+   ++    I   L
Sbjct: 540 AARHVDGMALLYADNLTDSMARAISETERRREIQKAYNELNGIVPRPAGKRASNSILSFL 599

Query: 738 L---------EDAATTNISIDA-------QQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
                     +DA    I+  A       Q   L+       +  L  +M  AA NLNFE
Sbjct: 600 ELSRRLQTDGKDADLVQITGRAVDALDSDQDSGLALDALPELIDQLETKMKEAAKNLNFE 659

Query: 782 EAARIRDEIKRLKSSPY 798
           EAA +RD IK+ +    
Sbjct: 660 EAASLRDRIKKFRQKLI 676


>gi|87309481|ref|ZP_01091616.1| excinuclease ABC subunit B [Blastopirellula marina DSM 3645]
 gi|87287789|gb|EAQ79688.1| excinuclease ABC subunit B [Blastopirellula marina DSM 3645]
          Length = 687

 Score =  807 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/659 (53%), Positives = 471/659 (71%), Gaps = 8/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q  + P+GDQPAAI QL++G+ +  + Q+LLGVTGSGKT+T+A VI+ +QRPA+V++
Sbjct: 3   FELQAPFAPAGDQPAAIEQLVEGLRAERRHQVLLGVTGSGKTYTVANVIQQLQRPALVIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFPHNAV YFVSYYDYYQPEAY+P+ D YIEK++SIN++IDR+R 
Sbjct: 63  HNKTLAAQLYSEFKEFFPHNAVHYFVSYYDYYQPEAYIPQRDIYIEKDASINDEIDRLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           ++T +L+ R D I+V+SVS IYG+GS   Y  M+V +  G  +++ E+L  LV   Y+R 
Sbjct: 123 ASTSALVSRRDVIIVASVSSIYGLGSPSDYKAMMVSIAKGQMIDRDEVLGRLVGILYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   R  FRV GD IEI+PS+ E+ A+R+ ++G+++E++S   PLTG+ I   E + IY
Sbjct: 183 DVAFERSKFRVRGDCIEIWPSY-EEFAYRIELWGDEVEQLSIINPLTGEVIAPQEQLYIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V P   +  A+  IK EL  RL ELE  G+LLEAQRL  R  +D+EM++  G C 
Sbjct: 242 PAKHFVLPEERVAKAVVDIKHELAARLQELESAGKLLEAQRLNARTRFDIEMMQEVGFCP 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR PG  P TL+++ P+D LLFVDESHVTI QI  MY GD  RK  L E+
Sbjct: 302 GIENYSRPLSGRPPGSAPSTLYDFFPKDFLLFVDESHVTISQIRAMYHGDRSRKMNLVEH 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP +F+EW  +    + VSATPG +ELE+  G +VEQIIRPTGL+DP VE
Sbjct: 362 GFRLPSALDNRPFKFDEWENIVNQAVFVSATPGDYELEKAGGEVVEQIIRPTGLLDPVVE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ AR QV+ + ++I        R+L+TVLTKR+AEDL  YL E+ I  +++HSE+   E
Sbjct: 422 LQPARGQVQHLLEQIRERVAVKERVLVTVLTKRLAEDLANYLSEQGIACKWLHSELDAFE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++RDLR GKFD LVGINLLREGLD+PE  LV ILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RVELLRDLREGKFDCLVGINLLREGLDLPEVSLVGILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN+KVILYAD +T S+Q AIDET RRR+ Q E+N+KH I P+S+K+ I   I     E+
Sbjct: 542 NVNAKVILYADRMTNSMQAAIDETDRRRKIQQEYNEKHGITPESIKKNIRRGI-----EN 596

Query: 741 AATTNISIDAQQLSLSKKKGK--AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            A  + +  A        +     ++  L+ +M  AA+NL FE AA IRD I +++ S 
Sbjct: 597 DADAHRTASAAVGKTDDAEYITLEYISELQTEMLAAAENLEFERAAGIRDRITKMQDSV 655


>gi|256394788|ref|YP_003116352.1| excinuclease ABC subunit B [Catenulispora acidiphila DSM 44928]
 gi|256361014|gb|ACU74511.1| excinuclease ABC, B subunit [Catenulispora acidiphila DSM 44928]
          Length = 703

 Score =  807 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/696 (50%), Positives = 482/696 (69%), Gaps = 28/696 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++  ++ +   ++ +DY P+GDQPAAIA+L + I + E+  +LLG TG+GK+ T A +
Sbjct: 2   RPLSELTRTVAPIEVVSDYQPAGDQPAAIAELTRRIEAGEQNVVLLGATGTGKSATTAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHS T SLL R D +VVS+VSCIYG+G+ E Y +  VQ+++G+  ++ ++
Sbjct: 122 SSINEEVERLRHSTTNSLLTRRDVVVVSTVSCIYGLGTPEEYLKSSVQIRVGEEHDRDKM 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD++EIFP + E+   R+ MFG+++E +   +P+TG
Sbjct: 182 LRRFVDMQYARNDLAFTRGTFRVRGDTVEIFPVY-EEHPVRIEMFGDEVERLMTLHPVTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + +   E ++++  +HYV     +  A+  I+ EL  RL ELEK+G+LLEAQRL  R TY
Sbjct: 241 EILTVDEELRVFPATHYVAGSDRMERALGGIETELADRLAELEKQGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEM+   G    IENYSR++ GR PG PP TL ++ PED LL +DESHVT+PQI  M+ 
Sbjct: 301 DLEMMRQVGFTSGIENYSRHIDGREPGSPPSTLIDFFPEDFLLVIDESHVTVPQIGAMHE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL----EQCQGII 544
           GD  RK TL E+GFRLPS +DNRPLR+EE+      T+ +SATPG +EL    E+     
Sbjct: 361 GDASRKRTLVEHGFRLPSAIDNRPLRWEEFEERVGQTVYLSATPGPYELGKQGEETSKSP 420

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           VEQIIRPTGLVDP V ++    Q++D+  E+   A++  R L+T LTK+M+EDLT+YL E
Sbjct: 421 VEQIIRPTGLVDPQVVLKPTHGQIDDLVAEVQARAERNERSLVTTLTKKMSEDLTDYLLE 480

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           R +R RY+HSEV TL R+E++R+LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGF
Sbjct: 481 RGVRTRYLHSEVDTLRRVELLRELRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGF 540

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
           LRS  SLIQTIGRAARNV+ +V +YADTIT S++LAIDET RRR+KQ+ +N+ + ++PQ 
Sbjct: 541 LRSGRSLIQTIGRAARNVSGEVHMYADTITPSMKLAIDETNRRRDKQIAYNEANGVDPQP 600

Query: 725 VKEKIMEVIDPILLEDAATTNISIDA-----------------------QQLSLSKKKGK 761
           ++++I ++ D +  EDA T  +   +                              ++  
Sbjct: 601 LRKRIADITDLLAREDADTAELLGGSGRQQSRGKAPVPGVASKGTMRSLDVAGKPAEELL 660

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             ++ L +QMH AA  L FE AAR RDEI  LK   
Sbjct: 661 GLIEDLSQQMHAAAAELQFELAARFRDEIGELKKEL 696


>gi|154508848|ref|ZP_02044490.1| hypothetical protein ACTODO_01358 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798482|gb|EDN80902.1| hypothetical protein ACTODO_01358 [Actinomyces odontolyticus ATCC
           17982]
          Length = 689

 Score =  807 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/683 (50%), Positives = 470/683 (68%), Gaps = 22/683 (3%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           ++    F++ + Y PSGDQP AI +L   I   E+  +L+G TG+GK+ T A +IE +QR
Sbjct: 2   TRQNKPFEVISPYTPSGDQPKAIRELAARIRDGEQDVVLMGATGTGKSATTAWLIEELQR 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PA+V+ PNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN++
Sbjct: 62  PALVLEPNKTLAAQLAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDE 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++R+RHSAT SLL R D +VVSSVSCIYG+G+ E Y   +++L+ G  +++  LL   V 
Sbjct: 122 VERLRHSATNSLLTRRDTVVVSSVSCIYGLGTPEEYVARMIELERGMIIDRDSLLRRFVA 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D+   RGTFRV GD+IEI P + E++A R+ MFG++IE ++  +PLTG  I +V
Sbjct: 182 MQYVRNDLAFTRGTFRVRGDTIEIIPVY-EELAIRIEMFGDEIESLAVLHPLTGDVIDHV 240

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           +   ++  SHYV     +  A+  I++EL  RL     + +LLE QRL  R T+DLEML+
Sbjct: 241 DHTYLFPASHYVASEERMKKAIASIEDELDDRLAWFRGQNKLLEEQRLRMRTTFDLEMLK 300

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             GSC  +ENYSR++ GR PG PP TL +Y P+D LL +DESHVT+PQI  M+ GD  RK
Sbjct: 301 EIGSCSGVENYSRHIDGRGPGTPPHTLLDYFPDDFLLIIDESHVTVPQIGAMFEGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YGFRLPS MDNRPL+++E+      T+ +SATPG +ELE+  G +VEQIIRPTGL
Sbjct: 361 RTLVDYGFRLPSAMDNRPLKWDEFTERIGQTVYLSATPGPYELERSDG-VVEQIIRPTGL 419

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           VDP V ++    Q++D+ +++ +  ++  R+L+T LTK+MAE+LT YL ER ++V Y+HS
Sbjct: 420 VDPLVVVKPTEGQIDDLLEQVRVRVERDERVLVTTLTKKMAEELTTYLAERGVKVEYLHS 479

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +V TL R+E++R+LRLG FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLIQT
Sbjct: 480 DVDTLRRVELLRELRLGTFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQT 539

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARNV+ +V +YAD +T S+  AI ET RRRE Q+ +NK+H I+PQ +++KI +V D
Sbjct: 540 IGRAARNVSGEVHMYADNMTDSMNEAISETMRRREIQIAYNKEHGIDPQPLRKKISDVTD 599

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR--------------------KQMHLA 774
            +  E   T  +     +   SK++        R                     QM  A
Sbjct: 600 MLAREQVDTQTLLEGGYRKEKSKRERSDATGGGRAVTSGQRAEAELAELIEELSAQMMTA 659

Query: 775 ADNLNFEEAARIRDEIKRLKSSP 797
           A +L FE AAR+RDEI+ LK   
Sbjct: 660 AQHLQFEVAARMRDEIEDLKKEL 682


>gi|15807266|ref|NP_295996.1| excinuclease ABC subunit B [Deinococcus radiodurans R1]
 gi|6460084|gb|AAF11823.1|AE002060_2 excinuclease ABC, subunit B [Deinococcus radiodurans R1]
          Length = 730

 Score =  807 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/664 (50%), Positives = 469/664 (70%), Gaps = 8/664 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           ++   ++++++ PSGDQP AIA L+ G+ S  + Q LLG TG+GKT++MAKVIE +QRPA
Sbjct: 57  EVVMLKVRSEFKPSGDQPTAIASLVDGLESGLRYQTLLGATGTGKTYSMAKVIEEVQRPA 116

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           ++MAPNKIL AQL SEF+ FFP  AVE+F+SYYDYYQPEAYVP  D +IEK++S+N++I+
Sbjct: 117 LIMAPNKILTAQLASEFREFFPDAAVEFFISYYDYYQPEAYVPGKDLFIEKDASVNQEIE 176

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           R+RHS TRSLL R D IVV+SVSCIYG+G  + Y+ +   +K G  + + ELL  LV  Q
Sbjct: 177 RLRHSTTRSLLTRRDTIVVASVSCIYGLGDPKEYTALNAIVKKGGVMPRDELLGRLVNMQ 236

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R DI ++ G F V G+++ ++P++ ++   R+ ++G+D+E IS  +PLTG+++ +++ 
Sbjct: 237 YERNDIELMPGRFSVKGETVTVWPAY-DEQPLRIELWGDDVERISVVHPLTGERLGDLDA 295

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y   HYV+    +  A+  I++EL  RL      G+LLEAQRL++R  YDLEML+  
Sbjct: 296 TVVYPAKHYVSSAGNIERAIGSIQQELDERLEYFHSVGKLLEAQRLKERTLYDLEMLKVL 355

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSR++ GR PG  P T+ +Y P+D + F+DESHVT+PQI GM  GD  RK T
Sbjct: 356 GYCSGIENYSRHIDGRAPGATPYTMLDYFPDDFITFIDESHVTVPQIGGMANGDRARKQT 415

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS MDNRPL FEE+      T+ VSATPG +E +     + +QIIRPTGLVD
Sbjct: 416 LVDYGFRLPSAMDNRPLNFEEFLSKTGQTVFVSATPGPFENQVSDS-VADQIIRPTGLVD 474

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P V IR  + Q+ED+   +      G R L+T LTKRM+EDLTEYL E+ ++ RY+HS++
Sbjct: 475 PEVTIRPIQGQIEDLLGRVRERTAAGERTLVTTLTKRMSEDLTEYLLEKGVKARYLHSDI 534

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            ++ER  IIRDLRLG +DVLVGINLLREGLD+PE  LVAILDADK GFLRS  +LIQTIG
Sbjct: 535 DSVERQVIIRDLRLGHYDVLVGINLLREGLDLPEVSLVAILDADKPGFLRSDRALIQTIG 594

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN +VILYAD +T +++ A+DET RRREKQL +N++H I P++V + + +VI   
Sbjct: 595 RAARNVNGEVILYADVVTPAMRFAMDETARRREKQLAYNEEHGITPRTVIKGVRDVIRGE 654

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            LE        I ++ +S  +    A L  L   M  A++ ++FE+AA +RD+I+ +++ 
Sbjct: 655 ELEGE------ISSENVSGDRDSLTAQLTDLELDMWQASEAMDFEKAASLRDQIRAIEAK 708

Query: 797 PYFQ 800
              +
Sbjct: 709 LQGK 712


>gi|118617256|ref|YP_905588.1| excinuclease ABC subunit B [Mycobacterium ulcerans Agy99]
 gi|189037984|sp|A0PP48|UVRB_MYCUA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|118569366|gb|ABL04117.1| excinuclease ABC (subunit B-helicase) UvrB [Mycobacterium ulcerans
           Agy99]
          Length = 701

 Score =  807 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/700 (50%), Positives = 473/700 (67%), Gaps = 33/700 (4%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    F++ + + P+GDQPAAI +L + I + E+  +LLG TG+GK+ T A +IE +QRP
Sbjct: 2   RTGASFEVISPHDPAGDQPAAINELERRIRAGERDVVLLGATGTGKSATTAWLIERLQRP 61

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +VMAPNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ +
Sbjct: 62  TLVMAPNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDV 121

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           +R+RHSAT +LL R D +VV+SVSCIYG+G+ +SY    V+L++G  V +  LL  LV  
Sbjct: 122 ERLRHSATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELQVGTDVPRDGLLRLLVDV 181

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D+   RG+FRV GD++EI PS+ ED+A R+  FG+ IE +   +PLTG  +R V+
Sbjct: 182 QYTRNDLSFTRGSFRVRGDTVEIIPSY-EDLAVRIEFFGDGIEALYYLHPLTGDVVRQVD 240

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
           +++I+  +HYV     +  A+  I+EEL  RL ELE  G+LLEA RL  R  YD+EM+  
Sbjct: 241 SLRIFPATHYVAGPERMAQAISTIEEELAERLAELEGHGKLLEAHRLRMRTNYDIEMMRQ 300

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR++ GR  G  P TL +Y PED LL +DESHVT+PQI GMY GD  RK 
Sbjct: 301 VGFCSGIENYSRHIDGRPAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKR 360

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L E+GFRLPS +DNRPL++EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLV
Sbjct: 361 NLVEFGFRLPSAVDNRPLQWEEFADRIGQTVYLSATPGPYELSQSGGEFVEQVIRPTGLV 420

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP V ++  + Q++D+  EI   A+   R+L+T LTK+MAEDLT+YL E  IRVRY+HSE
Sbjct: 421 DPKVVVKPTKGQIDDLIGEIRQRAEVDQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSE 480

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           V TL R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTI
Sbjct: 481 VDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTI 540

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+ +V +YAD IT S++ AIDET RRR KQ+ +N+ + I+PQ +++KI +++D 
Sbjct: 541 GRAARNVSGEVHMYADKITDSMKEAIDETERRRAKQVAYNEANGIDPQPLRKKIADILDQ 600

Query: 736 ILLEDAATTNIS------------------------------IDAQQLSLSKKKGKAHLK 765
           +  E   T                                        ++ + +    +K
Sbjct: 601 VYREADDTEAAESVPIGGSGRNSSRGRRAQGEPGRAVSAGVFEGRDTSTMPRAELADLIK 660

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
            L  QM +AA +L FE AAR RDEI  LK     +G+D +
Sbjct: 661 DLTSQMMVAARDLQFELAARFRDEIADLKKE--LRGMDAA 698


>gi|302341828|ref|YP_003806357.1| excinuclease ABC, B subunit [Desulfarculus baarsii DSM 2075]
 gi|301638441|gb|ADK83763.1| excinuclease ABC, B subunit [Desulfarculus baarsii DSM 2075]
          Length = 679

 Score =  807 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/661 (53%), Positives = 464/661 (70%), Gaps = 3/661 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++++DY P GDQP AIAQL  G+    K Q+LLGVTGSGKTFTMA VI A     +V
Sbjct: 19  AQFKLESDYQPQGDQPQAIAQLTAGLAQGCKRQVLLGVTGSGKTFTMANVIAASGLTTLV 78

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY EFK  FPHNAVEYFVSYYDYYQPEAY+P +DTYIEK+SSINE+ID+M
Sbjct: 79  LAPNKTLAAQLYGEFKALFPHNAVEYFVSYYDYYQPEAYIPASDTYIEKDSSINERIDKM 138

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R D I+V+SVSCIYG+GS E+Y+ M++ L+ GD V ++ +L  LV+  Y+
Sbjct: 139 RHAATFALLTRQDVIIVASVSCIYGLGSPEAYAGMLLYLQRGDQVGREAVLRKLVEMLYE 198

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +    RG FR  GD +EIFP++ E+ A R+  FG+++E IS   PL G  +   + + 
Sbjct: 199 RNEFSFHRGVFRARGDVVEIFPAYEEERAVRIEFFGDEVERISFIDPLRGVALEQTDKVV 258

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SHYVT       A+  I+ EL  R+   +   R +E+QR+ +R  +D+EM++  G 
Sbjct: 259 IFPASHYVTTEGVREAAIAAIRAELAERIKYYDDNARFIESQRIRERTLFDIEMMKELGW 318

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+LTGR PG+PPPTL +Y P+  LL +DESH+T PQ+ GMY GD  RKATL 
Sbjct: 319 CHGIENYSRHLTGRQPGQPPPTLLDYFPKKWLLIIDESHITAPQVRGMYNGDRSRKATLV 378

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS +DNRPL F+E+N L    I VSATP  +ELEQ QG++VEQ+IRPTGL+DP 
Sbjct: 379 DFGFRLPSALDNRPLNFDEFNALLDNVIYVSATPADYELEQAQGVVVEQLIRPTGLIDPI 438

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R A  QV+DV  E+ L A +G R L+T LTKRMAE+LTEYL E  + V+Y+HS++ T
Sbjct: 439 VEVRPASGQVDDVMAELRLVAGRGERALVTTLTKRMAEELTEYLTEVGLSVKYLHSDIDT 498

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           + R+E+++ LR G FD+LVGINLLREGLD+PE  LVAILDAD+EGFLRS  SLIQT GRA
Sbjct: 499 IARVELLQGLRRGDFDILVGINLLREGLDLPEVSLVAILDADREGFLRSTRSLIQTAGRA 558

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV  KVI YAD IT SI  A++ET+RRR  Q ++N++H I P+S+K+ I  ++ P + 
Sbjct: 559 ARNVGGKVIFYADQITDSIARAMEETSRRRVAQEQYNQEHGITPESIKKAIGAMLPPEIA 618

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
            D                  +  A +  LR++M  AA  L FEEAA +RD+IK L+    
Sbjct: 619 ADY---PAPPPLTAAVADPGELPAIIADLRRRMKEAAKGLRFEEAAELRDQIKALEEQDL 675

Query: 799 F 799
            
Sbjct: 676 L 676


>gi|225412398|ref|ZP_03761587.1| hypothetical protein CLOSTASPAR_05621 [Clostridium asparagiforme
           DSM 15981]
 gi|225042079|gb|EEG52325.1| hypothetical protein CLOSTASPAR_05621 [Clostridium asparagiforme
           DSM 15981]
          Length = 660

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/655 (52%), Positives = 466/655 (71%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI  L+KG     + + LLGVTGSGKTFTMA VI+ +Q+P +++A
Sbjct: 3   FKLHSEYQPTGDQPQAIEALVKGFREGNQFETLLGVTGSGKTFTMANVIQQLQKPTLIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK+S+IN++ID++RH
Sbjct: 63  HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER+D I+V+SVSCIYG+GS   Y  M++ L+ G   ++ E++  L+  QY+R 
Sbjct: 123 SATAALSERSDVIIVASVSCIYGLGSPIDYKSMVISLRPGMEKDRDEVIHKLIDIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGTFRV GD +EI+P++ +  A+RV  FG+++E I+    LT +    +  + I+
Sbjct: 183 EMDFKRGTFRVRGDVLEIYPAYSDGEAYRVEFFGDEVERIASIDTLTMEVKAQLGHVAIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P+  +  A + I  E+K R+   + E +LLEAQR+ +R  +D+EM+  TG C 
Sbjct: 243 PASHYVVPKEKMMEATENILAEMKERVAFFKSEDKLLEAQRIAERTNFDVEMMRETGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTG  PGEPP TL +Y PED L+ VDESH+T+PQ+ GMY GD  RK+TL E+
Sbjct: 303 GIENYSRHLTGSAPGEPPCTLIDYFPEDFLIIVDESHITLPQVRGMYAGDRSRKSTLVEF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       + VSATP  +E +  + + VEQIIRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLNFSEFESKIDQMMFVSATPNVYERDH-ELLRVEQIIRPTGLLDPEIS 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  E+N       ++L+T LTKRMAEDLT+Y+ +  IRV+Y+HS++ TLE
Sbjct: 422 VRPVEGQIDDLVSEVNREVAGRHKVLITTLTKRMAEDLTDYMRDVGIRVKYLHSDIDTLE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRD+R+  FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQT+GRAAR
Sbjct: 482 RAEIIRDMRMDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTVGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI+YAD IT S+++AI+ET RRR+ Q E+N+ H I P ++K+ + ++I       
Sbjct: 542 NSEGHVIMYADKITDSMRVAIEETNRRRKIQQEYNEVHGITPTTIKKAVRDLIAISKAVT 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +      D +  S+ +K+ K   K L K+M  AA  LNFE+AA++RD +  +K 
Sbjct: 602 DSDDRFKKDPE--SMDEKELKKLAKELEKKMRQAAVELNFEQAAKLRDRMLEVKK 654


>gi|159901478|ref|YP_001547725.1| excinuclease ABC subunit B [Herpetosiphon aurantiacus ATCC 23779]
 gi|238687090|sp|A9B464|UVRB_HERA2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|159894517|gb|ABX07597.1| excinuclease ABC, B subunit [Herpetosiphon aurantiacus ATCC 23779]
          Length = 698

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/662 (50%), Positives = 466/662 (70%), Gaps = 2/662 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +   ++   Y P GDQP AIAQL+ G++S    Q LLG TG+GKT T+A+VIE +QRP +
Sbjct: 1   MPPLKVHAPYEPRGDQPQAIAQLVNGLNSGLVHQTLLGATGTGKTHTIARVIEQVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           VMA NK LAAQLY+EFK FFP NAV YFVSYYD Y PEAYVP  D YIEKE+ INE+IDR
Sbjct: 61  VMAHNKTLAAQLYAEFKEFFPENAVGYFVSYYDAYTPEAYVPSKDLYIEKEAQINEEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH AT++L  R+D I+V+SVS IYG+GS   Y Q+ ++LK G+   + ++L +L+  Q+
Sbjct: 121 LRHEATQALFTRSDVIIVASVSAIYGLGSPTDYGQVALKLKTGEIRNRDKVLRTLIDLQF 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RGTFRV GD++EIFP++ E  A+R+ M+G++IE + E  PLTG+ +   + I
Sbjct: 181 ERNDLDFHRGTFRVRGDTLEIFPANAES-AFRIEMWGDEIERMVEVDPLTGEILTQKDHI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           +++   H++     +  A+  I+ EL+ +L  LE EG++LEA RL+QR  YDLE++E  G
Sbjct: 240 EVFPAKHFIPNADKMQAAIGDIRLELEQQLAHLEGEGKVLEAARLKQRTLYDLEIMEELG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR++  R+ G+ P TL +Y P+D LL +DESH+++PQI GM+ GD  RK TL
Sbjct: 300 YCSGIENYSRHMDRRSEGQTPWTLLDYFPDDFLLVIDESHISVPQIRGMFNGDRSRKQTL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS +DNRPL F+E++      I VSATPG +E +  +  +VEQIIRPTGL+DP
Sbjct: 360 VDFGFRLPSALDNRPLMFDEFSKHVHQAIYVSATPGVYEYQHHEQ-VVEQIIRPTGLLDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R  R Q++D+  EI      G R+L+T LTKRMAEDLT+YL E  +R +Y+HS+V 
Sbjct: 419 MVEVRRTRGQIDDLLGEIKRRVDTGSRVLVTTLTKRMAEDLTDYLKEMGVRTQYLHSDVD 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ERI+I+RDLRLG FDVLVGINLLREGLD+PE  LVAILDADK GFLRS++SL+Q IGR
Sbjct: 479 TIERIDILRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKAGFLRSESSLVQIIGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+++  V++YADTIT ++  AI ET RRR+ Q  +N++H I P+ + + + ++ + + 
Sbjct: 539 AARHIDGTVLMYADTITPAMDYAISETRRRRQIQERYNQQHGIEPKGIVKAVRDLTEGMK 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                       A   S++K++    + +L KQM  AA +L FE+AA +RD++  ++ + 
Sbjct: 599 KVAEKPAAYQTAANPDSMTKEELFKVINALEKQMKQAAKDLEFEKAALLRDQLTEMRQTL 658

Query: 798 YF 799
             
Sbjct: 659 AL 660


>gi|239940423|ref|ZP_04692360.1| excinuclease ABC subunit B [Streptomyces roseosporus NRRL 15998]
 gi|239986904|ref|ZP_04707568.1| excinuclease ABC subunit B [Streptomyces roseosporus NRRL 11379]
 gi|291443854|ref|ZP_06583244.1| excinuclease ABC subunit B [Streptomyces roseosporus NRRL 15998]
 gi|291346801|gb|EFE73705.1| excinuclease ABC subunit B [Streptomyces roseosporus NRRL 15998]
          Length = 713

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/705 (50%), Positives = 480/705 (68%), Gaps = 38/705 (5%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++   + +  F++ + Y PSGDQP AIA+L + I + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVSKIERSVRPFEVVSPYQPSGDQPTAIAELERRIRADEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +VQLK+G+ +++ +L
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVQLKVGEEIDRDQL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V+ QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG
Sbjct: 182 LRRFVEMQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIENLSTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I    T+ ++  SHYV     +  A+  I++EL+ RL ELEK+G++LEAQRL  R TY
Sbjct: 241 EIISEDPTVHVFPASHYVAGPERMERAVTGIEQELEQRLAELEKQGKMLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EML   G+C  +ENYS +   R PG  P TL +Y P+D LL +DESHVT+PQI  MY 
Sbjct: 301 DIEMLRQIGTCSGVENYSMHFDDRAPGTAPNTLLDYFPDDFLLVLDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS MDNRPL++EE+      T+ +SATPG +EL +  G  VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSAMDNRPLKWEEFLKRIDQTVYLSATPGKYELSRGDG-FVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y  E  I+
Sbjct: 420 IRPTGLVDPEVVVKPTEGQIDDLVHEIRKRTERDERVLVTTLTKKMAEDLTDYFLELGIQ 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADK+GFLRS 
Sbjct: 480 VRYLHSDVDTLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD +T +++ AIDET RRREKQ+ +N +  I+PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADKVTPAMEQAIDETNRRREKQIAYNTERGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKK------------------------------ 758
           I +++  I  E+  T  +     +     K                              
Sbjct: 600 INDIVATIAREEIDTEQLLGTGYRQGKETKAPVPALGGKAARGGAKGAAKGKAAKSGAVT 659

Query: 759 ------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                 +    ++ +  +M  AA +L FE AAR+RDE+  LK   
Sbjct: 660 GDRPATELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELKKEL 704


>gi|126663561|ref|ZP_01734558.1| excinuclease ABC subunit B [Flavobacteria bacterium BAL38]
 gi|126624509|gb|EAZ95200.1| excinuclease ABC subunit B [Flavobacteria bacterium BAL38]
          Length = 662

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/658 (51%), Positives = 464/658 (70%), Gaps = 5/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y P+GDQP AI +L KGI + EK Q LLGVTGSGKTFT+A V++ +Q+P +V+A
Sbjct: 3   FQVVSEYKPTGDQPQAIEKLSKGIVNGEKYQTLLGVTGSGKTFTVANVVQEVQKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+N+V+YFVSYYDYYQPEA++P T TYIEK+ SINE+++++R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPNNSVQYFVSYYDYYQPEAFIPVTGTYIEKDLSINEELEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T +LL  R D IV+SSVSC+YGIG+   + + +V L+ G  + + +LL  LV+  Y R
Sbjct: 123 STTSALLSGRRDIIVISSVSCLYGIGNPVEFQKNVVNLETGQQISRTKLLHQLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +     G FR+ GD +EIFPS+ ++  +R+  FG++IEEI  F   T Q +   E + I
Sbjct: 183 TEADFNPGNFRIKGDIVEIFPSYGDE-PFRIHFFGDEIEEIEAFDARTAQVLERYEKLSI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+++L  ++   ++ G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLQNAIWAIQQDLVKQVDYFKEIGKHLEAKRLEERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ VDESHVTI Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDFLMVVDESHVTISQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +ELE+ +G+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELEKTEGVYVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR +  Q++D+ +EI L  +   R+L+T LTKRMAE+L +YL +  IR RY+HS+V TL
Sbjct: 422 EIRPSANQIDDLIEEIQLRCEADERVLVTTLTKRMAEELAKYLTKVAIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K I+YAD ITKS+Q  IDETT RREKQ ++N KH + P+++ + +   +    + 
Sbjct: 542 RNVNGKAIMYADKITKSMQKTIDETTYRREKQTKYNTKHGLEPKALNKSLGSALSGNSVS 601

Query: 740 D---AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                     + + + L LSK + +  ++ +RK M  AA  L+F +AA++RD+IK L+
Sbjct: 602 TGYFEKEALKAAEPESLYLSKPEIEKKIRDMRKLMEKAAKELDFMQAAKLRDDIKALQ 659


>gi|326798149|ref|YP_004315968.1| UvrABC system protein B [Sphingobacterium sp. 21]
 gi|326548913|gb|ADZ77298.1| UvrABC system protein B [Sphingobacterium sp. 21]
          Length = 675

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/670 (49%), Positives = 483/670 (72%), Gaps = 14/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI QL++G+ + E  Q LLGVTGSGKTFT+A VI   QRP ++++
Sbjct: 3   FTISSEYVPTGDQPEAIRQLVEGVEAGEHYQTLLGVTGSGKTFTIANVIAQTQRPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAV YFVSYYDYYQPEAY+  ++TYIEK+  IN++I+++R 
Sbjct: 63  HNKTLAAQLYGEMKQFFPENAVNYFVSYYDYYQPEAYIAHSNTYIEKDLQINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             T +L+  R D +VVSS+SCIYG+G+ E +S+ + +  +G ++ +   L  LV+  Y R
Sbjct: 123 RTTSALMSGRRDIVVVSSISCIYGMGNPEDFSRSVFRFGVGTTISRNAFLHRLVEILYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD++++FP++++D A+R++ FG++IEE+S   P++G+ +  +ET+ +
Sbjct: 183 TTADFKRGTFRVKGDTVDVFPAYMDD-AYRITFFGDEIEELSVIDPVSGKTLDKMETLAL 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VTP+     ++  I++EL  R  +L K+GR+LEA+RLE+R+ YDLEM+   G C
Sbjct: 242 FPANLFVTPKEKFTQSLWAIQDELVQRKEQLVKDGRMLEAKRLEERVNYDLEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GR PG  P  L +Y P+D L+ +DESHVT+PQI  MY GD  RK +L E
Sbjct: 302 SGIENYSRFFDGRQPGMRPFCLLDYFPDDYLMVIDESHVTVPQIRAMYGGDRSRKISLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL F+E+  + P TI VSATPG +EL++ +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAALDNRPLNFQEFESMAPQTIYVSATPGDYELQKTEGVVVEQVIRPTGLLDPTI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR    QV+D+ DE++   ++G R+L+T LTKRM+E+LT+Y+    I+VRY+HSE+KTL
Sbjct: 422 EIRPVVNQVDDLLDEVDKVTKEGGRVLVTTLTKRMSEELTKYMSRLGIKVRYIHSEIKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAA
Sbjct: 482 ERVEILRGLRLGEFDVLVGINLLREGLDLPEVTLVAILDADKEGFLRSQTSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD+IT S++  IDET RRREKQ+++N++H I P++V +    +++   + 
Sbjct: 542 RNDRGRVIMYADSITDSMRATIDETNRRREKQIKYNEEHGIVPRTVGKSREAIMEQTSVA 601

Query: 740 D------------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           D               ++++ D     +SK + +  + + ++ M  AA +++F +AA++R
Sbjct: 602 DFKGGAAKAYVDPDPASSVAADPVVQYMSKAQLQKAIDTAKRDMERAAKDMDFLQAAKLR 661

Query: 788 DEIKRLKSSP 797
           DE+  L+ + 
Sbjct: 662 DEMFALEKTM 671


>gi|254526928|ref|ZP_05138980.1| excinuclease ABC, B subunit [Prochlorococcus marinus str. MIT 9202]
 gi|221538352|gb|EEE40805.1| excinuclease ABC, B subunit [Prochlorococcus marinus str. MIT 9202]
          Length = 679

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/676 (51%), Positives = 467/676 (69%), Gaps = 17/676 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  +++Q  Y P+GDQP AI +L+KG+++ ++ Q LLG TG+GKTFT+A VI+   RPA+
Sbjct: 1   MNNYKLQAPYEPNGDQPEAIKKLVKGVNTGKEFQTLLGATGTGKTFTIANVIQQTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G S+  +  L SLV+ QY
Sbjct: 121 LRHSATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFEVGKSINLRSSLRSLVENQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI I RG FR+ GD +EI P++ ED   R+  FG+++E I    P TG+ + ++E +
Sbjct: 181 TRNDIEITRGRFRIKGDVLEIGPAY-EDRLIRIEFFGDEVEAIRYIDPTTGEILESLEQV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+VTP+  L +A+  I+ ELK +L +   EG+LLEAQRLEQR  YDLEML+  G
Sbjct: 240 SVYPAKHFVTPKERLESAISAIRSELKTQLEKFTYEGKLLEAQRLEQRTKYDLEMLKEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L+GR  G PP  L +Y P+D LL VDESHVT PQ+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLSGREEGSPPECLIDYFPKDWLLVVDESHVTCPQLHAMYNGDQSRKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+      T+ +SATPG WEL+QC G  +EQ+IRPTG++DP
Sbjct: 360 IDHGFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWELDQCDGEFIEQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R +  Q+ED+  EI + A++  R+L+T LTKRMAEDLT++L E  +RVRY+HSE+ 
Sbjct: 420 VIDVRPSEGQIEDLLSEIRIRAKKNQRVLVTTLTKRMAEDLTDFLSENKVRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLR+G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V    +LYAD  T S++ AI ET RRR  Q ++N+ + I P+   +KI   I   L
Sbjct: 540 AARHVEGVALLYADNFTDSMKRAISETERRRTIQKKYNQVNGITPKPAGKKIENSILSFL 599

Query: 738 L--EDAATTNISIDAQQLSLSK--------------KKGKAHLKSLRKQMHLAADNLNFE 781
                     +S D   +  +K              ++    ++ L  +M  AA  LNFE
Sbjct: 600 ELSRKLDADGLSKDLINIVHNKTDSILNSSDNQCLLEELPDLIEKLEIKMKDAAKELNFE 659

Query: 782 EAARIRDEIKRLKSSP 797
           EAA +RD IK+L+   
Sbjct: 660 EAAILRDRIKKLRQKL 675


>gi|325297929|ref|YP_004257846.1| UvrABC system protein B [Bacteroides salanitronis DSM 18170]
 gi|324317482|gb|ADY35373.1| UvrABC system protein B [Bacteroides salanitronis DSM 18170]
          Length = 674

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/673 (49%), Positives = 465/673 (69%), Gaps = 14/673 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AIAQL +G+ +    Q LLGVTGSGKTFT+A VI+ + +P ++++
Sbjct: 3   FELVSDYQPTGDQPEAIAQLTEGVKNGVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFKNFFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN +ID++R 
Sbjct: 63  HNKTLAAQLYGEFKNFFPHNAVEYYVSYYDYYQPEAYIPSTDTYIEKDLAINGEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  RND +V+SS+SCIYG+G+   +   ++++K G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRNDVVVISSISCIYGMGNPADFYNNVIEIKKGKKLDRNVFLRKLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ + RG FRV GD+++IF ++  D A RV  + ++I+ I E  P++G +I   +  KI
Sbjct: 183 NDLELNRGNFRVKGDTVDIFLAYT-DSALRVMFWDDEIDAIEEIDPISGHRINEYDEYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T + ++  A+  I+++L  ++   E++G+  EA+RL +R+TYD+EML   G C
Sbjct: 242 YPANLFMTTKESVLRAIHQIEDDLTKQVAWFEEQGKNYEAKRLYERVTYDMEMLRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PG  P  L ++ P+D L+ +DESH ++PQI  MY GD  RK  L +
Sbjct: 302 SGIENYSRYFDGREPGTRPYCLLDFFPKDFLMVIDESHASVPQIRAMYGGDRARKENLIK 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L    I VSATP  +ELEQ +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFQELAKQIIYVSATPDDYELEQSEGIVVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR +  QV+D+ +EI    ++  RIL+T LTKRMAE+LTEYL +  IR  Y+HS+V+TL
Sbjct: 422 EIRPSMNQVDDLMEEIQQRIERQERILVTTLTKRMAEELTEYLLQHGIRCTYIHSDVETL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMEDLRQGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI+YAD IT S+Q  IDET RRR KQL +N+ H I P+ +K     ++      
Sbjct: 542 RNVNGKVIMYADRITDSMQQTIDETNRRRAKQLAYNEAHGITPKQIKRAYNNILLEQTES 601

Query: 740 DAATTN------------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           +++T+              + D     +SK++ +  +   RK M  AA  L+F EAA+ R
Sbjct: 602 ESSTSKPKAYTDAPAQMYAAADPIVQYMSKEQLQKSINRTRKLMQEAAKKLDFIEAAQYR 661

Query: 788 DEIKRLKSSPYFQ 800
           DE+ RL+     +
Sbjct: 662 DELLRLEDQLKGK 674


>gi|313203369|ref|YP_004042026.1| excinuclease ABC subunit b [Paludibacter propionicigenes WB4]
 gi|312442685|gb|ADQ79041.1| Excinuclease ABC subunit B [Paludibacter propionicigenes WB4]
          Length = 666

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/661 (48%), Positives = 454/661 (68%), Gaps = 6/661 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++   + P+GDQP AI QL++G+++    Q LLGVTGSGKTF++A V+E +QRP +V+
Sbjct: 2   PFKLIFPFRPTGDQPEAIRQLVEGLNADIPFQTLLGVTGSGKTFSIANVVEQIQRPTLVL 61

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAY+P +DTYIEK+ +IN++I+++R
Sbjct: 62  SHNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYLPVSDTYIEKDLAINQEIEKLR 121

Query: 260 HSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
            + T +LL  R D +VVSSVSCIYG+G+ + ++  ++ +  G  V + + L +LV   Y 
Sbjct: 122 LATTSALLSGRRDVLVVSSVSCIYGMGNPDDFNSNVIDIHRGQKVVRNDFLRTLVDSLYT 181

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +I + RG FRV GD+++IF ++  D   RV  +G++IE+I    PLT     + ++ K
Sbjct: 182 RNEIELNRGNFRVKGDTVDIFLAYA-DFVLRVVFWGDEIEDIQTVDPLTFNVQESFDSYK 240

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  S +VT +  L  A++ I+ ++  ++      G+  EA+R+ +R+ YD+EM++  G 
Sbjct: 241 IYPASIFVTTKERLAAAIQLIEIDMAKQVDYFRSIGKHYEAKRIYERVNYDIEMIKELGY 300

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRY  GR  G  P  L +Y P+D L+ +DESHV+I QI  M+ GD  RK  L 
Sbjct: 301 CSGIENYSRYFDGREAGSRPFCLLDYFPKDFLMVIDESHVSISQIRAMFGGDSARKQNLV 360

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+FEE+  L P TI VSATP  +ELE+ QGI+++Q+IRPTGL+DP 
Sbjct: 361 DYGFRLPSAKDNRPLKFEEFEELAPQTIYVSATPADYELEKSQGIVIDQLIRPTGLLDPI 420

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +++R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LT+YL +  ++  Y+HS+V T
Sbjct: 421 IDVRPSLNQIDDLLEEITVRTEKNERTLVTTLTKRMAEELTDYLGKMGVQCNYIHSDVDT 480

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L+R++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRA
Sbjct: 481 LDRVQIMEDLRRGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRA 540

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--- 735
           ARN+N +VI+YAD IT S+Q  I ET RRREKQL +N+ H I P ++ +           
Sbjct: 541 ARNLNGRVIMYADKITDSMQKTISETNRRREKQLAYNEAHGITPTAIVKGERNSFSKAEP 600

Query: 736 -ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              +E   + +I+ D     +SK   +  +   +K M  AA  L F EAA++RDE+ +L+
Sbjct: 601 LAYIEPENSKSIAADPVVQYMSKSALEKAIAKTKKSMQEAAKKLEFLEAAQLRDELIKLE 660

Query: 795 S 795
            
Sbjct: 661 E 661


>gi|149177973|ref|ZP_01856570.1| excinuclease ABC subunit B [Planctomyces maris DSM 8797]
 gi|148843166|gb|EDL57532.1| excinuclease ABC subunit B [Planctomyces maris DSM 8797]
          Length = 681

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/665 (52%), Positives = 469/665 (70%), Gaps = 4/665 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+++++ PSGDQPAAIA L+ GI + +  Q+LLGVTGSGKTFTMA VI  + RPA+
Sbjct: 1   MSVFQLKSEFQPSGDQPAAIAGLVNGIKAGKSDQVLLGVTGSGKTFTMANVIAELGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLYSEFK FFP NAV YFVSYYDYYQPEAY+P+ D YIEK++SIN++IDR
Sbjct: 61  VLSHNKTLAAQLYSEFKEFFPENAVSYFVSYYDYYQPEAYIPQRDIYIEKDASINDEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R  AT +L+ R D IVV+SVSCIYG+GS + Y +M++ L++G+ +++ E+L  L+  QY
Sbjct: 121 LRLLATSALVSRRDVIVVASVSCIYGLGSPKDYLEMMIPLRVGEEIDRDEMLRKLIDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++ + R  FRV GD +E +P++ E+ A+R+  +G++IE ++   PLTG+ +R V+  
Sbjct: 181 DRNNVELARAKFRVRGDVVECWPAY-EEFAFRIEFWGDEIENLAIIDPLTGEVLRTVKEA 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+V P+  + +A++ I+ EL  R+  L+ EG+LLE+QRL  R  YD+E+LE  G
Sbjct: 240 YIYPAKHFVLPQERIESAIQEIQTELDERIQVLQSEGKLLESQRLSARTRYDMELLEEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L GR PG PP TL ++ PED LLFVDESHVT  Q+  MY GD  RK  L
Sbjct: 300 FCPGIENYSRALAGRKPGSPPDTLLDFFPEDYLLFVDESHVTCSQVRAMYAGDRSRKTNL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLP  +DNRPL F+EWN  R  T+ VSATPG WELE+ +G +VEQ+IRPTGL+DP
Sbjct: 360 VDHGFRLPMALDNRPLTFDEWNARRKQTVFVSATPGDWELERVEGEVVEQVIRPTGLIDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + I  AR QV  + +EI        R+L+T LTKR+AEDL  Y  E  IR  +MHSE+ 
Sbjct: 420 VIRIEPARGQVPHLKEEILKRVAVNERVLVTTLTKRLAEDLASYFQEEGIRCAWMHSELD 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER+EI+R LR  K+DV++GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 AFERVEILRGLREQKYDVVIGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           +AR+VN++VILYAD +T S+Q A+DET RRR  Q E+N++H I P+S+K+ I   I+   
Sbjct: 540 SARHVNAEVILYADRVTPSMQNAMDETERRRAIQKEYNREHGITPESIKKAIKRGIE--- 596

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            E  A   +         S+   +  L  L ++M  AA+ L FE AA +RD I  LK+  
Sbjct: 597 EEIEARQFVRESVGFKDESEYITQEFLGELEQEMLAAAEKLEFERAALLRDRIDDLKNQR 656

Query: 798 YFQGL 802
              G 
Sbjct: 657 GKTGG 661


>gi|78780126|ref|YP_398238.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9312]
 gi|78713625|gb|ABB50802.1| Excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9312]
          Length = 679

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/676 (51%), Positives = 467/676 (69%), Gaps = 17/676 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  +++Q  Y P+GDQP AI +L++G++S ++ Q LLG TG+GKTFT+A VI+   RPA+
Sbjct: 1   MKNYKLQAPYEPNGDQPEAIKKLVRGVNSGKEFQTLLGATGTGKTFTIANVIQQTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G S+  +  L SLV+ QY
Sbjct: 121 LRHSATRSLFERKDVIVVASISCIYGLGIPSEYLKAAVKFEVGKSINLRSSLRSLVENQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI I RG FR+ GD +EI P++ ED   R+ +FG+++E I    P TG+ + ++E I
Sbjct: 181 TRNDIEITRGRFRIKGDVLEIGPAY-EDRLIRIELFGDEVEAIRYVDPTTGEILESLEQI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+VTP+  L +A+  IK ELK +L +   EG+LLEAQRLEQR  YDLEML+  G
Sbjct: 240 SVYPAKHFVTPKERLESAISAIKSELKTQLDKFTYEGKLLEAQRLEQRTKYDLEMLKEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L+GR  G PP  L +Y P+D LL VDESHVT PQ+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLSGREEGSPPECLIDYFPKDWLLVVDESHVTCPQLHAMYNGDQSRKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ EE+      T+ +SATPG WEL+QC G  VEQ+IRPTG++DP
Sbjct: 360 IDHGFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWELDQCNGEFVEQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R +  Q+ED+  EI + A++  R+L+T LTKRMAEDLT++L E  +RVRY+HSE+ 
Sbjct: 420 VIDVRPSEGQIEDLLSEIRIRAEKNQRVLVTTLTKRMAEDLTDFLSENKVRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLR+G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V    +LYAD  T S++ AI ET RRR  Q +HN+ + I P+   +KI   I   L
Sbjct: 540 AARHVEGVALLYADNFTDSMKRAISETERRRTIQKKHNQDNGITPKPAGKKIENSILSFL 599

Query: 738 LEDAA----------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
                                 T++ ++A       ++    +  L  +M  AA  LNFE
Sbjct: 600 ELSRKLDAGGLSKDLINIVNNKTDVILNASDNQCLIEELPHLIDKLEMKMKDAAKELNFE 659

Query: 782 EAARIRDEIKRLKSSP 797
           EAA +RD IK+L+   
Sbjct: 660 EAANLRDRIKKLRQKL 675


>gi|320093713|ref|ZP_08025578.1| excision endonuclease subunit UvrB [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319979334|gb|EFW10824.1| excision endonuclease subunit UvrB [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 690

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/678 (50%), Positives = 474/678 (69%), Gaps = 18/678 (2%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    F++ ++Y PSGDQP AI +L   I   E+  +L+G TG+GK+ T A +IE +QRP
Sbjct: 8   RQERPFEVVSEYSPSGDQPKAIKELASRIRDGEQDVVLMGATGTGKSATTAWLIEELQRP 67

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
           A+V+ PNK LAAQL +EF+   P NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN+++
Sbjct: 68  ALVLEPNKTLAAQLAAEFRELLPGNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINDEV 127

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           +R+RHSAT SLL R D +VVSSVSCIYG+G+ E Y   +++L+ G  +++  LL   V  
Sbjct: 128 ERLRHSATNSLLTRRDTVVVSSVSCIYGLGTPEEYVARMIELERGMRIDRDALLRRFVAM 187

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D+   RGTFRV GD+IEI P + E++A R+ MFG++I+ ++  +PLTG  I  V+
Sbjct: 188 QYVRNDMAFTRGTFRVRGDTIEIIPVY-EELAIRIEMFGDEIDSLAVLHPLTGDVIDEVD 246

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              ++  SHYV     +  A+  I+EE++ R+   E +G+LLEAQRL  R T+DLEML  
Sbjct: 247 RTYLFPASHYVAGEERMKRAIGTIEEEMEERVAWFEGQGKLLEAQRLRMRTTFDLEMLRE 306

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            GSC  +ENYSR++ GR PG PP TL +Y P+D LL +DESHVT+PQI  M+ GD  RK 
Sbjct: 307 IGSCAGVENYSRHIDGRGPGTPPHTLLDYFPDDFLLIIDESHVTVPQIGAMFEGDMSRKR 366

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL ++GFRLPS MDNRPL+++E+      T+ +SATPG +EL++  G +VEQIIRPTGLV
Sbjct: 367 TLVDHGFRLPSAMDNRPLKWDEFTARIGQTVYLSATPGPYELDRSDG-VVEQIIRPTGLV 425

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP V ++    Q++D+ +++    ++  R+L+T LTK+MAE+LT YL ER +RV Y+HS+
Sbjct: 426 DPLVTVKPTEGQIDDLLEQVRARVEKDERVLVTTLTKKMAEELTTYLAERGVRVEYLHSD 485

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           V TL R+E++R+LR G FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS  SLIQTI
Sbjct: 486 VDTLRRVELLRELRKGAFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQTI 545

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+ +V +YADT+T S++ A+ ET RRR+ Q+ +N++H I+P+ ++++I +V D 
Sbjct: 546 GRAARNVSGEVHMYADTVTDSMREALSETMRRRDLQIAYNREHGIDPKPLRKRIADVTDM 605

Query: 736 ILLEDAATTNISIDAQQLSLSKKK----------------GKAHLKSLRKQMHLAADNLN 779
           +  E   T ++     +   +  +                  + ++ L +QM  AA +L 
Sbjct: 606 LAREQIDTESLLEGGYRREKTAAERTAAGARGAAGRAQGDLASLIEELSEQMMTAAAHLQ 665

Query: 780 FEEAARIRDEIKRLKSSP 797
           FE AAR+RDEI+ LK   
Sbjct: 666 FELAARLRDEIEDLKKEL 683


>gi|290967948|ref|ZP_06559498.1| excinuclease ABC, B subunit [Megasphaera genomosp. type_1 str. 28L]
 gi|290782087|gb|EFD94665.1| excinuclease ABC, B subunit [Megasphaera genomosp. type_1 str. 28L]
          Length = 713

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/669 (53%), Positives = 473/669 (70%), Gaps = 3/669 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D   F +   Y P+GDQP A+A L  GI S +  Q+LLG TG+GKT+TMAKVIEA+Q+P 
Sbjct: 13  DSQPFHVVAPYAPTGDQPQAVASLTAGIRSGQWAQVLLGATGTGKTYTMAKVIEAVQKPT 72

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LAAQL SEFK FFP+N V YFVSYYDYYQPEAY+  TDTYIEK+S+IN++ID
Sbjct: 73  LVIAHNKTLAAQLCSEFKQFFPNNEVAYFVSYYDYYQPEAYIAATDTYIEKDSAINDEID 132

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++RHSAT SL ER D I+V+SVSCIYG+G  E YS+++V L++G   EQ E+L  LV  Q
Sbjct: 133 KLRHSATMSLFERRDVIIVASVSCIYGLGDPEDYSELVVSLRLGQEKEQTEILRKLVAVQ 192

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R  + + RGTFRV GD+IE+FP   ++   R+ MFG++IE ++E   LTG+ +   + 
Sbjct: 193 YTRSQMTLQRGTFRVLGDTIEVFPVSFDNTVVRIEMFGDEIERLTEVDALTGEVVAERKH 252

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           + IY  SHYVT +  +  A+  I+ EL  RL EL+++G+LLEAQRLEQR  YD+EM+   
Sbjct: 253 VAIYPASHYVTTKEKMTRAVATIEAELAARLQELKRDGKLLEAQRLEQRTRYDIEMMMEM 312

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSR+L GR  GE P TL +Y PED L+ VDESHVT+PQ+  MY GD  RK  
Sbjct: 313 GYCSGIENYSRHLAGRKAGETPYTLLDYFPEDYLIMVDESHVTLPQLRAMYAGDRSRKEN 372

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPLRFEE+       I VSATPG +E+E     +  QIIRPTGL D
Sbjct: 373 LIEYGFRLPSALDNRPLRFEEFVERINQIIYVSATPGPYEME-AATNVAHQIIRPTGLTD 431

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R    Q++D+  EI L  ++  R+L+T LTK+MAEDLTEY+ E  +R+RY+HS++
Sbjct: 432 PTIEVRPIAGQLDDLLGEIRLRTERKERVLVTTLTKKMAEDLTEYMREMGVRIRYLHSDI 491

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T  R EIIRDLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS T+ IQT+G
Sbjct: 492 ATFARAEIIRDLRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSYTAFIQTMG 551

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN   KVI+YAD +T S++ AI ET RRR  Q  +NK+H+I PQ+VK++++++I+  
Sbjct: 552 RAARNARGKVIMYADRMTDSMRRAIAETARRRAVQEAYNKEHHIVPQTVKKEVVDLIELT 611

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            + +A     +   Q+  L+ +  +  ++++ +QM+ A   L FE+AA +RD +  L+  
Sbjct: 612 KVAEAPRPYGA--QQEAPLTPEALQKVIRTVTRQMNEAVKQLKFEQAAVLRDRLGSLRQQ 669

Query: 797 PYFQGLDDS 805
                 DD+
Sbjct: 670 LADLSQDDT 678


>gi|224541969|ref|ZP_03682508.1| hypothetical protein CATMIT_01142 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525109|gb|EEF94214.1| hypothetical protein CATMIT_01142 [Catenibacterium mitsuokai DSM
           15897]
          Length = 656

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/654 (53%), Positives = 458/654 (70%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + + P GDQP AI +L+KGIH  +K Q+LLG TG+GKTFT A VI  + +P +V++
Sbjct: 3   YKLVSKFKPMGDQPEAIKELVKGIHEGKKTQVLLGGTGTGKTFTFANVIAQVNKPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFP N VEYF+S +D+YQPEAY+P++DTYI+KES  NE+I+ +R 
Sbjct: 63  HNKTLAGQLYSELKEFFPENRVEYFISNFDFYQPEAYIPKSDTYIDKESQTNEEIEMLRA 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +A  SLLER D IVV+SV+ IYG+G+ +SY +MI  L++G  ++++ELL+ LV +QY R 
Sbjct: 123 AAMNSLLERKDTIVVASVAAIYGLGNPQSYQEMIFSLRVGQEIDRRELLTFLVDRQYTRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+  ++GTFRV GD IEI P H E    R+ +FG++++ I+E  PLTG    +  T  IY
Sbjct: 183 DMDQVKGTFRVRGDVIEIVPGHTESYIIRIELFGDEVDRITEVDPLTGHVQASYNTYTIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               Y+T R  +  A   I+EELK RL   +   + LE +R++ R  +D+EML   G C 
Sbjct: 243 PAEEYITSREKMLHACDTIEEELKDRLQYYQDVAKPLEYERIDNRTRHDIEMLREVGICP 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P  L +Y P+D LL VDESHV +PQI GM+ GD  RK TL EY
Sbjct: 303 GIENYSRHIDGRKPGERPYCLIDYFPDDFLLIVDESHVMLPQIRGMFNGDRSRKETLVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P  I VSATPG +ELE   G  VEQIIRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLRFEEFEKLIPQAIFVSATPGDYELEGVHGEYVEQIIRPTGLLDPIIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI L  ++  R+L+T LTKRMAEDLT+YL E  ++V Y+HSE KTLE
Sbjct: 423 VRPIEDQIDDIISEIQLRIERNERVLITTLTKRMAEDLTDYLKEFGLKVAYLHSETKTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+RDLRLGK+DVL+GINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 483 RTEILRDLRLGKYDVLIGINLLREGLDLPEVSLVCILDADKEGFLRSERSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +  VI+YAD IT S+Q AIDET+RRRE Q  +NK H I P ++K++I E I    + D
Sbjct: 543 NADGHVIMYADRITDSMQHAIDETSRRREIQEAYNKAHGITPTTIKKEIREAIHGQEVID 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            A   +    +     KK  K  L+ L +QM  AA  L+FE A  +RD I+ +K
Sbjct: 603 EAQKLVKKGRKA---PKKDKKVLLEELERQMKEAAKVLDFERAMELRDMIEEIK 653


>gi|94985990|ref|YP_605354.1| excinuclease ABC subunit B [Deinococcus geothermalis DSM 11300]
 gi|94556271|gb|ABF46185.1| excinuclease ABC, B subunit [Deinococcus geothermalis DSM 11300]
          Length = 676

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/659 (52%), Positives = 469/659 (71%), Gaps = 8/659 (1%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++++D+ PSGDQP AI  L+ G+ S  + Q LLG TG+GKT++MAKVIE   RPA++MAP
Sbjct: 3   KVKSDFKPSGDQPTAIRSLVDGLASGLRFQTLLGATGTGKTYSMAKVIEETGRPALIMAP 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NKIL AQL SEF+ FFP  AVE+F+SYYDYYQPEAYVP  D +IEK++SIN++I+R+RHS
Sbjct: 63  NKILTAQLASEFREFFPGAAVEFFISYYDYYQPEAYVPGKDLFIEKDASINQEIERLRHS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
            TRSLL R D IVV+SVSCIYG+G  E Y  + + LK+G+ V + E+L  LV  QY+R D
Sbjct: 123 TTRSLLTRRDTIVVASVSCIYGLGDPEEYRALNLILKVGEQVGRDEILGRLVTMQYERND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           + +  G FR  GD +E++PS+ ++   R+ ++G D++ I   +P+TG K+ +++   +Y 
Sbjct: 183 LELAPGRFRAKGDIVEVWPSY-DEQPLRIELWGEDVDRIQIVHPVTGDKLGDLDATVVYP 241

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
             HYV+    +  A+  I+EEL+ RL   +  G+LLEAQRL++R  YDLEML+  G C  
Sbjct: 242 AKHYVSSAGNIERAIVTIQEELEERLEYFKSVGKLLEAQRLKERTLYDLEMLKVLGYCSG 301

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSR++ GR PGE P T+ +Y P+D + F+DESHVT+PQI GM  GD  RK TL +YG
Sbjct: 302 IENYSRHIDGRKPGETPYTMLDYFPDDFITFIDESHVTVPQIGGMANGDRARKQTLVDYG 361

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPS +DNRPL F+E+       + VSATPG +E +     + +QIIRPTGLVDP V +
Sbjct: 362 FRLPSALDNRPLNFDEFLHKTGQIVFVSATPGPFERQVSDN-VADQIIRPTGLVDPSVTV 420

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R  + QV+D+   I   A +G R L+T LTKRMAEDLTEYL E+ +R RYMHS++ ++ER
Sbjct: 421 RPIQGQVDDLLGRIRERAARGERTLVTTLTKRMAEDLTEYLLEKGVRARYMHSDIDSVER 480

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             IIRDLRLG +DVL+GINLLREGLD+PE  LVAILDADK GFLRS+ +LIQTIGRAARN
Sbjct: 481 QVIIRDLRLGHYDVLIGINLLREGLDLPEVSLVAILDADKPGFLRSERALIQTIGRAARN 540

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           VN +V+LYADT+T ++Q A+DET RRREKQL +N +H I PQ+V++ + +VI     E+ 
Sbjct: 541 VNGEVVLYADTVTPAMQAALDETQRRREKQLAYNAEHGITPQTVRKGVRDVIRG---EEV 597

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
           A  ++S D       +    A L  L  +M  A+++L+FE AA +RD+I+ +++    +
Sbjct: 598 AEVDVSTDLGD---DRDALTAQLTELELEMWQASEDLDFERAAALRDQIRAIEARLQGK 653


>gi|239907002|ref|YP_002953743.1| UvrABC system protein B [Desulfovibrio magneticus RS-1]
 gi|239796868|dbj|BAH75857.1| UvrABC system protein B [Desulfovibrio magneticus RS-1]
          Length = 685

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/683 (52%), Positives = 464/683 (67%), Gaps = 22/683 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ++++Y P GDQP AI +L + +      Q LLG TG+GKTFTMA+V+  + RPA+VMA
Sbjct: 3   FQLESEYLPRGDQPQAIDELARNLDQGVPSQTLLGATGTGKTFTMAQVVAKLNRPALVMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLYSEFK  FPHNAVEYFVSYYDYYQPEAY+PRTDTYIEK+SSIN+ ID++RH
Sbjct: 63  PNKTLAAQLYSEFKGLFPHNAVEYFVSYYDYYQPEAYLPRTDTYIEKDSSINDDIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT SLL R D ++V+SVSCIYG+GS + Y +M++ L +G+ +  +++L+ LV+ QY+R 
Sbjct: 123 AATHSLLTRRDVLIVASVSCIYGLGSRDYYERMVLTLSVGEKIGMEKVLARLVEIQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD IEI P++  + A R+  F +++E I E  PLTG+ +  ++   I+
Sbjct: 183 DYDFHRGVFRVRGDVIEIIPAYARERALRLEFFDDELEAIQETDPLTGEVLGTMDKAIIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV+ R  LN A+  I+EEL++RL EL     LL AQRLE R   DLEM+E  G C 
Sbjct: 243 PASHYVSDRANLNRAVSDIREELRLRLTELRGRNDLLAAQRLEMRTMQDLEMIEELGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  G+PP TL +Y P+D +LFVDESH+T+PQI GMY GD  RK TL +Y
Sbjct: 303 GIENYSRHLDGRQAGDPPYTLLDYFPKDFILFVDESHITVPQIGGMYAGDRSRKQTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+       + VSATPG WEL + +G++VEQIIRPTGL+DP VE
Sbjct: 363 GFRLPSALDNRPLNFEEFLGRIGQAVYVSATPGDWELTRSEGVVVEQIIRPTGLLDPEVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  E       G R+L+T LTKRMAE+L EY     +  RY+HS++ TLE
Sbjct: 423 VRPTKGQMDDLMAECRKRMAAGERVLVTTLTKRMAEELNEYFNSMGVTSRYLHSDIDTLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ II+ LR G+F VLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT GRAAR
Sbjct: 483 RVAIIKALRQGEFAVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTRSLIQTFGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +VILYAD +T+S+  A+DET RRREKQ   N++  + P+SV + +  V+D +  + 
Sbjct: 543 NVGGRVILYADNMTRSMSAAMDETARRREKQEASNRETGLTPRSVVKAMDSVLDSLYAKG 602

Query: 741 AATTNI----------------------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
            A T                                +SKK  +  LK + ++M  AA  L
Sbjct: 603 DAKTGSWSASGGGYATAGGGLGAGAAVHEEAEAYGGMSKKAMERKLKQVEREMREAAKAL 662

Query: 779 NFEEAARIRDEIKRLKSSPYFQG 801
            FE+AA+ RD+   L+      G
Sbjct: 663 EFEKAAQFRDQAATLRQRLLEMG 685


>gi|229816345|ref|ZP_04446652.1| hypothetical protein COLINT_03395 [Collinsella intestinalis DSM
           13280]
 gi|229808101|gb|EEP43896.1| hypothetical protein COLINT_03395 [Collinsella intestinalis DSM
           13280]
          Length = 749

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/701 (51%), Positives = 474/701 (67%), Gaps = 33/701 (4%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           S     F++ + + PSGDQP AIA L++G+   ++ Q+LLGVTGSGKTFTMAK IEA+ +
Sbjct: 23  SGSPAPFEVVSPFEPSGDQPQAIASLVQGVRDGDRYQVLLGVTGSGKTFTMAKTIEALGK 82

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +VMAPNK LAAQL SE K FFP+NAV YFVSYYDYYQPEAYVP +DTYIEK+SSINE+
Sbjct: 83  PTLVMAPNKTLAAQLASELKEFFPNNAVVYFVSYYDYYQPEAYVPSSDTYIEKDSSINEE 142

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++ +RH AT SLL R D IVV+SVSCIYGIGS E Y+ +   +   + +E+ E + SL+ 
Sbjct: 143 VEMLRHQATASLLSRRDVIVVASVSCIYGIGSPEDYAGLAPNVDKKEPLERDEFIHSLID 202

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D  + RGTFRV GD ++++P + E    R   FG+++E I+E   +TG+ +R  
Sbjct: 203 IQYDRNDYDLARGTFRVRGDVVDVYPPYAE-HPLRFEFFGDEVELIAEIDEVTGEIMREF 261

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           + I ++  SHYVT +P +  A+K I+EEL+ R+ EL+   +LLEAQRLEQR +YDLEMLE
Sbjct: 262 DAIPVWPASHYVTEKPKVTAALKSIEEELEARVAELKANDKLLEAQRLEQRTSYDLEMLE 321

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
           T G    IENYSR+L GR PGEPP TL +Y P+D L  +DESHVT+PQI GM+ GD  RK
Sbjct: 322 TMGFTTGIENYSRHLDGRKPGEPPFTLIDYFPKDMLCIIDESHVTVPQIRGMHEGDRSRK 381

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL E+GFRLPS +DNRPLR++E+    P  I VSATPG +EL   Q   VEQIIRPTGL
Sbjct: 382 VTLVEHGFRLPSALDNRPLRYDEFEARIPQFIYVSATPGDYELRVSQNN-VEQIIRPTGL 440

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +++R  R Q++D+ DEI     +  R+L+T LTKRMAEDLT++L +  IRV YMHS
Sbjct: 441 LDPKIDVRPVRGQIDDLIDEIRERVARHERVLVTTLTKRMAEDLTDHLLDAGIRVNYMHS 500

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +  T++R+EI+R LR GK DVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQT
Sbjct: 501 DTATMDRVEILRSLRQGKIDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNRRSLIQT 560

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN   +V++YAD+IT S++ AIDET RRR  Q  +N++H I PQ+V+  I ++  
Sbjct: 561 IGRAARNAEGEVVMYADSITDSMREAIDETNRRRAIQTAYNEEHGIKPQTVRRSINDISS 620

Query: 735 PILLEDA-------------------------------ATTNISIDAQQLSLSKKKGKAH 763
            I   +                                      I      L  ++    
Sbjct: 621 FIAEAEENVGKKDRSRGDTLGHGAFFSPAGTEGEDDACEGVGERIARDFADLPTEELVRV 680

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
           ++++   M  A++ ++FEEAAR+RD + +LK+       D+
Sbjct: 681 IETMEDDMRAASEAMDFEEAARLRDIVVQLKAMSEGTSEDE 721


>gi|148653352|ref|YP_001280445.1| excinuclease ABC subunit B [Psychrobacter sp. PRwf-1]
 gi|148572436|gb|ABQ94495.1| Excinuclease ABC subunit B [Psychrobacter sp. PRwf-1]
          Length = 705

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/663 (55%), Positives = 480/663 (72%), Gaps = 9/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M TD+ P+GDQP AI +L+KG+ +    QLLLGVTGSGKT+TMAKVI   QRP I+MA
Sbjct: 40  FEMVTDFEPAGDQPQAIEKLVKGVEAGMDAQLLLGVTGSGKTYTMAKVISETQRPTIIMA 99

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYV  +DT+IEK+S+IN+ ID+MR 
Sbjct: 100 HNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDSAINDHIDQMRL 159

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I++SSVS IYG+G  ESY +M++ + +GD V++  L+  LV  QY R 
Sbjct: 160 SATRALLERRDAIIISSVSSIYGLGDPESYLKMLLHIVVGDVVDRNALIKRLVALQYTRN 219

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGT+R+ G+ ++I+P+  E +A R+SMF +++E+IS F PLTG+ +R+V  I IY
Sbjct: 220 ELDFERGTYRLRGELLDIYPAESEQLAVRISMFDDEVEKISWFDPLTGKTVRSVPRITIY 279

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  L  A K I+ EL  RL       +L+EAQR+++R  YDLEM++  G C 
Sbjct: 280 PKSHYVTPREKLEAASKTIRAELDDRLEYFRANDKLIEAQRIKERTQYDLEMIQQLGYCN 339

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS++L+GR  GE PPTLF+YIP D+LLF+DESHVT+PQI  MY+GD  RK  L  Y
Sbjct: 340 GIENYSQHLSGRPAGEAPPTLFDYIPPDALLFIDESHVTVPQIGAMYKGDRSRKENLVNY 399

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRP++FEEW  ++P TI VSATP  +ELE  +  IVEQ++RPTGL+DP +E
Sbjct: 400 GFRLPSAMDNRPMKFEEWERIKPATIFVSATPAQYELENSEQ-IVEQVVRPTGLIDPEIE 458

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+DV  EI        R+L+T LTKRM+EDLT+YL E +++V Y+HS++ T+E
Sbjct: 459 IRPVLTQVDDVLSEITKRRDVNERVLITTLTKRMSEDLTDYLKEYDVKVAYLHSDIDTVE 518

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G  DVLVGINLLREGLD+PE  LVAI DADKEGFLRS+ SLIQTIGRAAR
Sbjct: 519 RMQIIHELRTGVHDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERSLIQTIGRAAR 578

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD IT S+Q AI+ET RRREKQ+  NK+H I P+S    I + ID   +E+
Sbjct: 579 NLNGKAILYADKITPSMQKAIEETDRRREKQIAFNKEHGITPKSATRSITDKIDTGEVEE 638

Query: 741 AATTNISIDAQ--------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
               N  I +         ++  S       +  L KQM   +  L FE+AA++RD++  
Sbjct: 639 DVNDNQPIPSSSGLPDVDIEILRSPDLLAKEINRLEKQMKQFSRELKFEDAAKVRDKVLA 698

Query: 793 LKS 795
           L++
Sbjct: 699 LRA 701


>gi|325111226|ref|YP_004272294.1| excinuclease ABC subunit B [Planctomyces brasiliensis DSM 5305]
 gi|324971494|gb|ADY62272.1| Excinuclease ABC subunit B [Planctomyces brasiliensis DSM 5305]
          Length = 689

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/660 (52%), Positives = 479/660 (72%), Gaps = 4/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  FQ+ +++ P+GDQP AI  L +G+   ++ Q+LLGVTGSGKTFTMA VI+ MQRP +
Sbjct: 1   MPDFQIASEFQPAGDQPKAIESLSRGLEEGKRNQVLLGVTGSGKTFTMANVIQKMQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY+EF+ FFP+NAV YFVSYYDYYQPEAY+P+ D YIEK++SIN++IDR
Sbjct: 61  VLSHNKTLAAQLYAEFREFFPNNAVTYFVSYYDYYQPEAYIPQRDIYIEKDASINDEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R  AT +L+ R D IVV+SVSCIYG+GS + Y  M++ L++G+ V++ +LL  LV   Y
Sbjct: 121 LRLLATSALVSRRDVIVVASVSCIYGLGSPKDYLDMMIPLQVGEQVDRDDLLLRLVDIHY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D    RG FRV GD IE++P++ E+ A+R+ ++G++IE +S   P++G+  +  + I
Sbjct: 181 ERNDFQRARGKFRVRGDVIELWPAY-EEFAYRIELWGDEIETLSIIDPVSGETHKIHKDI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+V P+  ++ AM  I+EEL  RL E   +G+LLE QRL  R  YD+E+L+ TG
Sbjct: 240 YIYPAKHFVLPQSRIDAAMVEIEEELNSRLEEFRTQGKLLEMQRLSARTRYDMELLKETG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L+GR PG+PP TL+++ P+D L+F+DESHVT+PQ+  MY GD  RK +L
Sbjct: 300 FCPGIENYSRALSGRKPGQPPYTLYDFFPDDFLMFIDESHVTLPQVRAMYAGDRSRKESL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLP  MDNRPL FEEWN  R   + VSATP  WEL+Q +G IVEQIIRPTGLVDP
Sbjct: 360 VEHGFRLPMAMDNRPLTFEEWNKRRGQVVFVSATPADWELDQSEGEIVEQIIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + I  AR QV+ + ++I     +G R L+T LTKR++EDLT YL E  I+  ++HSE+ 
Sbjct: 420 LIHIVPARRQVQHLIEQIRERTARGERTLVTTLTKRLSEDLTGYLQEEGIKCAWLHSELD 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER+EI+R+LR G  D LVG+NLLREG+D+PE  LVAILDADKEGFLR++TSLIQTIGR
Sbjct: 480 AIERVEILRELREGVHDALVGVNLLREGIDLPEVSLVAILDADKEGFLRNETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           +ARNVN++VILYADT+T+S++ AI ET RRRE QLE+N+KH I P+++++ I   I+  L
Sbjct: 540 SARNVNAEVILYADTMTESMENAIGETNRRRELQLEYNQKHGITPETIRKAIRRGIEEEL 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                   +S  + +     ++   +L+ L  +M  AA+NL FE AA +RD+I +LK   
Sbjct: 600 EARQIVQQVSGASDETQYVTQE---YLQELEAEMLKAAENLEFERAAELRDQIMKLKEKI 656


>gi|300771027|ref|ZP_07080904.1| excision endonuclease subunit UvrB [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762300|gb|EFK59119.1| excision endonuclease subunit UvrB [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 677

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/669 (51%), Positives = 485/669 (72%), Gaps = 14/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L+ G++  E  Q LLGVTGSGKTFT+A VI+  Q+PA++++
Sbjct: 3   FKLTSEYQPTGDQPQAIKELVAGVNDGETYQTLLGVTGSGKTFTIANVIQETQKPALILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP N+V YFVSYYDYYQPEA++  ++TYIEK+ +INE+I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPENSVNYFVSYYDYYQPEAFIASSNTYIEKDLAINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           + T SL+  R D +VVSSVSCIYG+G+ E +S+ I +  +G ++ +   L  LV+  Y R
Sbjct: 123 ATTSSLMSGRRDIVVVSSVSCIYGMGNPEDFSRSIFRFAVGTTISRNAFLHKLVEILYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD+++++P++L D A RVS FG++I+E+S   P++ + I  +E + +
Sbjct: 183 TTAEFKRGTFRVKGDTVDVYPAYL-DYAIRVSFFGDEIDELSAIDPVSAKTINKMEDLAL 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VTP+     ++  I++EL  R  +LE EG++LEA+RLE+R+ YDLEM+   G C
Sbjct: 242 FPANLFVTPKEKFTQSIWAIQDELMQRKAQLEDEGKMLEAKRLEERVNYDLEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GR PG  P TL +Y P+D LL +DESHVTIPQ+  MY GD  RK +L E
Sbjct: 302 SGIENYSRFFDGRQPGMRPFTLLDYFPDDYLLVIDESHVTIPQLRAMYGGDRSRKVSLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL F E+  L   TI VSATPG +EL+Q +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAALDNRPLNFPEFESLTNQTIYVSATPGDYELQQTEGVVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R A  QV+D  ++++   ++G R+L T LTKRMAE+LT+Y+   NI+VRY+HSEVKTL
Sbjct: 422 EVRPAINQVDDFLEQVDKTIKEGGRVLATTLTKRMAEELTKYMTRLNIKVRYIHSEVKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R LRLG+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 482 ERVEILRGLRLGEFDVLVGVNLLREGLDLPEVTLVAILDADKEGFLRSERSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP---- 735
           RN   +VI+YAD +T S+Q+ IDET RRREKQ+++N++H+I P++V +   E+++     
Sbjct: 542 RNDKGRVIMYADKMTDSMQITIDETNRRREKQMKYNEEHHITPRTVGKTREEIMEQTSVA 601

Query: 736 --------ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                   I +E   T  ++ D     LS+K  K  +++ +K+M  AA  ++F EAA++R
Sbjct: 602 DFNGMEPKIYVEPDPTVAVAADPVMQYLSEKDLKKAIETTKKRMEKAAKEMDFLEAAKLR 661

Query: 788 DEIKRLKSS 796
           DE+  L+ +
Sbjct: 662 DEMFSLEKA 670


>gi|319951903|ref|YP_004163170.1| uvrabc system protein b [Cellulophaga algicola DSM 14237]
 gi|319420563|gb|ADV47672.1| UvrABC system protein B [Cellulophaga algicola DSM 14237]
          Length = 662

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/661 (50%), Positives = 460/661 (69%), Gaps = 5/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP+AI QL++G+++ EK Q LLGVTGSGKTFT+A VIE +Q+P +V+A
Sbjct: 3   FKVVSEFKPAGDQPSAIKQLVEGLNTDEKYQTLLGVTGSGKTFTVANVIETVQKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P +  YIEK+ SINE I+++R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPSSGLYIEKDLSINEDIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IVV+SVSC+YGIG+   + + ++ +     + + + L  LV+  Y R
Sbjct: 123 STTSSLLSGRRDVIVVASVSCLYGIGNPVEFQKNVISVHKDQVISRTKFLHQLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                  G FRV GD +++FPS+  D A+R+  FG++IEEI  F PL   K+ + E + I
Sbjct: 183 TTADFRNGNFRVKGDVVDVFPSYA-DHAFRIHFFGDEIEEIEAFDPLKNTKLESYENLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+++I+++L  ++   ++ G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDILQNAIRHIQDDLVKQIDFFKEVGKPLEAKRLEERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ VDESHVTI Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVVDESHVTISQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL+   G+ VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQLSDGVFVEQIIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI    ++  R L+T LTKRMAE+L +YL   NIR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLVEEIQQRNEKDERTLVTTLTKRMAEELAKYLDRINIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+++LR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQNLRKGIFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N K I+YAD ITKS+Q  ID+T  RREKQ+ +N KHN+ P+++ + +  V+    + 
Sbjct: 542 RNLNGKAIMYADKITKSMQQTIDDTNYRREKQMAYNAKHNLVPKALNKSLDSVLAKNSVS 601

Query: 740 D---AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                     + +     L+K++ +  ++  RK M  AA  L+F +AA++RDEIK L+  
Sbjct: 602 TYHFEKEVARAAEPDLDYLTKEQIEKMIREKRKDMEKAAKELDFMQAAKLRDEIKMLQKQ 661

Query: 797 P 797
            
Sbjct: 662 E 662


>gi|94265897|ref|ZP_01289625.1| Excinuclease ABC, B subunit [delta proteobacterium MLMS-1]
 gi|93453556|gb|EAT03958.1| Excinuclease ABC, B subunit [delta proteobacterium MLMS-1]
          Length = 665

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/654 (55%), Positives = 462/654 (70%), Gaps = 4/654 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + +++ P+GDQP AI  L +G+ +    Q+LLGVTGSGKTFTMA+VI    RPA+V+
Sbjct: 1   MFDLVSEFAPAGDQPRAIELLSRGVMAGTPHQVLLGVTGSGKTFTMAQVIAETSRPALVL 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLYSEFK  FPHNAVEYFVSYYDYYQPEAY+P++DTYIEK+S+IN+ ID+MR
Sbjct: 61  APNKTLAAQLYSEFKELFPHNAVEYFVSYYDYYQPEAYIPQSDTYIEKDSAINDTIDQMR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H ATR+LL R D I+V+SVSCIYG+GS E Y  M + L++G+     E+   LV   Y+R
Sbjct: 121 HGATRALLTRRDVIIVASVSCIYGLGSPEEYLNMNLALQVGEDYPPAEIQRRLVHMLYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RGTFRV GD +EIFP H +D A RV +FG+ IE I    PL G     +E + +
Sbjct: 181 NDYSFHRGTFRVRGDVVEIFPVHEDDRALRVELFGDTIEAIRVVDPLRGVVHEELEEVTV 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT +   + A+K IK EL  RL EL    RLLEAQRLEQR  +DLEML+  G C
Sbjct: 241 FPGSHFVTSKERQDQAIKTIKAELTQRLAELHANKRLLEAQRLEQRTMFDLEMLQELGYC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+ T   PG PPPTL +Y P+D LLF DESHV IPQ+ GMYRGD  RK TL E
Sbjct: 301 HGIENYSRHFTRLPPGAPPPTLLDYFPDDYLLFTDESHVAIPQVRGMYRGDRSRKETLVE 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL F+E++      I VSATPG  ELE   G +VEQIIRPTGL+DP +
Sbjct: 361 YGFRLPSALDNRPLMFDEFSARVHQAIYVSATPGDHELEISGGRVVEQIIRPTGLMDPKI 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R A++QV+D+  EI   AQ+   IL+T LTKRMAEDL EY     +RVRY+HS++KTL
Sbjct: 421 EVRPAQSQVDDLLAEIRSRAQRDEAILVTTLTKRMAEDLCEYYRNIEVRVRYLHSDIKTL 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+E+IRDLR  ++DVLVGINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQT GRAA
Sbjct: 481 QRMELIRDLRRREYDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTCGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN +  VILY D I+ ++   I ET RRRE Q E+N++H I P +++ KI +++  +  +
Sbjct: 541 RNAHGMVILYGDKISAAMAATIAETERRREIQAEYNREHGITPATIRSKIKDLMATVYEQ 600

Query: 740 DAATTNIS----IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           D  T  +      + Q +  S+++ +  +K L K+M  AA  L FE+AA +RD 
Sbjct: 601 DYTTVELPEEGVAEEQPVFRSREELRREIKELEKEMARAARELAFEDAAELRDR 654


>gi|33241258|ref|NP_876200.1| excinuclease ABC subunit B [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|81835781|sp|Q7V9M1|UVRB_PROMA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|33238788|gb|AAQ00853.1| Helicase subunit of the DNA excision repair complex
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 677

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/677 (50%), Positives = 462/677 (68%), Gaps = 17/677 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ + ++  Y P GDQP AI +L+ G++S  + Q LLG TG+GKTFT+A VI    RPA+
Sbjct: 1   MSKYYLKAPYQPKGDQPKAITKLVDGVNSGREYQTLLGATGTGKTFTIANVIAKTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAYVP +DTYI K SSINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYVPVSDTYIAKTSSINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER+D IVV+S+SCIYG+G    Y +  V+ K+G+ +  ++ L  LV  QY
Sbjct: 121 LRHSATRSLFERDDVIVVASISCIYGLGIPSEYLKASVKFKVGNEINLRKSLRELVANQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D  I RG FRV GD +EI P++ +D   R+ +FG++IE I    P+TG+ + ++  I
Sbjct: 181 FRNDFDIGRGKFRVKGDVLEIGPAY-DDRLVRIELFGDEIEAIRYVDPITGEILDSLNCI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP+  L TA+  I++ELK +L    KEG+LLEAQRLEQR  YDLEML   G
Sbjct: 240 SIYPAKHFVTPKERLVTAIDDIQKELKEQLDFFNKEGKLLEAQRLEQRTKYDLEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L+GR  G PP  L +Y P+D LL +DESHVT  Q+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLSGREAGSPPECLIDYFPKDWLLVIDESHVTCSQLLAMYNGDQSRKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+ +E+      T+ +SATPG+WELE   G I+EQ+IRPTG++DP
Sbjct: 360 IEHGFRLPSAADNRPLKSQEFWNKANQTVFISATPGNWELEISSGAIIEQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R  + QVED+ DEI   +++  R+L+T LTKRMAEDLT+YL E ++RVRY+HSE+ 
Sbjct: 420 LVEVRPTKGQVEDLLDEIRERSRKKQRVLITTLTKRMAEDLTDYLSENDVRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLR+G++DVLVG+NLLREGLD+PE  LV ILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRMGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR++  K +LYAD  T S++ AI+ET RRR  Q  +N+++NI P    +K    I   L
Sbjct: 540 AARHIEGKALLYADNFTDSMKKAIEETERRRAIQESYNQQNNIVPMPAGKKANNSILSFL 599

Query: 738 LEDAATTNISIDAQQLSLSK----------------KKGKAHLKSLRKQMHLAADNLNFE 781
                     ID   + ++                 +     +  L  +M  +A +L+FE
Sbjct: 600 ELSRRVQKDGIDNDLVEIAGNVVDEFKFNNNSELAIENLPQLIDELETKMKKSAKDLDFE 659

Query: 782 EAARIRDEIKRLKSSPY 798
            AA++RD+I +L+    
Sbjct: 660 NAAKLRDKIHQLRKKLI 676


>gi|227432640|ref|ZP_03914616.1| excision endonuclease subunit UvrB [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351610|gb|EEJ41860.1| excision endonuclease subunit UvrB [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 669

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/660 (50%), Positives = 465/660 (70%), Gaps = 1/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y P+GDQP AI +L+ GI++  K Q+LLG TG+GKTFT++ VI+ +++P +V++
Sbjct: 10  FEIKSKYEPTGDQPQAIEKLVGGINNHVKEQILLGATGTGKTFTISNVIKEVKKPTLVLS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S++N++ID++R+
Sbjct: 70  HNKTLAGQLYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNDEIDKLRN 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLERND IVV+SVS I+G+G    Y   ++ L++G   E+ +L+  L+  Q+ R 
Sbjct: 130 SATSSLLERNDVIVVASVSSIFGLGDPHQYKDHVISLRVGYEYERDQLMRDLIDVQFTRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD IEIFP+  +++A R+  FG++I+ I E   LTG+ I   + + I+
Sbjct: 190 DIDFHRGTFRVRGDVIEIFPASQDEMALRIEFFGDEIDRIREINSLTGETIAERDHVAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H++T    +  A+  I++E+  ++   +KEG+LLEAQR++QR  YDL MLE  G   
Sbjct: 250 PAKHFMTDDDQMQVALDGIRQEMNTQVELFKKEGKLLEAQRIKQRTEYDLAMLEEMGFVG 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GEPP TL ++  +D L+ +DESHVT+PQI GM+ GD  RK TL  Y
Sbjct: 310 GIENYSRWMDGRQAGEPPFTLIDFFLDDFLIVIDESHVTMPQIRGMFNGDKARKETLVNY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG-IIVEQIIRPTGLVDPPV 559
           GFRLPS +DNRPL+  E+       I +SATPG +E E+     +++QIIRPTGL+DP V
Sbjct: 370 GFRLPSALDNRPLKLPEFEKHVNQIIYMSATPGDYENERVDSKHVIQQIIRPTGLLDPEV 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI   +++  R+ +T LTKRMAEDLT+YL +  I+V Y+H+++KTL
Sbjct: 430 EVRPVMGQIDDLVGEITKRSERDERVFITTLTKRMAEDLTDYLKDLGIKVAYLHADIKTL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EIIRDLRLGK+DVL+GINLLREG+D+PE  LVAILDADKEGFLR+  SLIQTIGRAA
Sbjct: 490 ERTEIIRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNPRSLIQTIGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VI+YAD +T+S+  AIDET RRRE Q+++N +H I P+++K+ I ++I      
Sbjct: 550 RNENGHVIMYADKMTRSMLEAIDETARRREIQMQYNTQHGITPKTIKKDIRDLISVTHAA 609

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
                          L K + ++ + ++  QM  AA  L+FEEAA++RD +  LK+    
Sbjct: 610 TEEKVVDLTKVAFNDLPKDEQQSIVDNMTSQMKAAAKALDFEEAAQLRDTVMELKTRANL 669


>gi|148927424|ref|ZP_01810941.1| excinuclease ABC, B subunit [candidate division TM7 genomosp. GTL1]
 gi|147887215|gb|EDK72680.1| excinuclease ABC, B subunit [candidate division TM7 genomosp. GTL1]
          Length = 656

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/660 (54%), Positives = 465/660 (70%), Gaps = 4/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F ++T Y P+GD P AIAQL+ G+   EK Q LLGVTGSGKTFTMA +I+  Q P +
Sbjct: 1   MSRFNLKTTYEPTGDXPTAIAQLVSGLDKGEKTQTLLGVTGSGKTFTMANIIQQRQAPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL+SEFK+FFP N V YFVSY+DYYQPEAY+  +DTYIEK+S INE+IDR
Sbjct: 61  VLAHNKTLAAQLFSEFKSFFPENXVHYFVSYFDYYQPEAYIASSDTYIEKDSKINEEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+AT +LL R D I+V+SVSCIYGIGS   Y  M + +K G+   Q + +  L   QY
Sbjct: 121 LRHAATAALLTRRDVIIVASVSCIYGIGSPGDYGNMAITVKRGERRAQNKFIRWLTDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI   R  FRV GD +++FP+  E  A+R+  FG+D++ ++E  PLTG+ I   + I
Sbjct: 181 HRNDIDFSRSAFRVRGDVVDVFPAGGE-TAYRIEFFGDDVDRLTEINPLTGEIINEPDRI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYVTP+  L  A++ I+ ELK RL   E+ G+LLEAQRL QR  YDLEMLE TG
Sbjct: 240 TIFPGSHYVTPQDKLKVAIERIRSELKDRLAYFEQSGKLLEAQRLGQRTKYDLEMLEETG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
             + IENYSRYLT R PGE P TL +Y P+D LL +DESH+TIPQ+ GMY GD  RK  L
Sbjct: 300 FVKGIENYSRYLTDREPGEQPATLLDYFPDDFLLLIDESHMTIPQVRGMYNGDRARKEIL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL F E+       I VSATPG +EL +      +Q+IRPTGL+DP
Sbjct: 360 VEHGFRLPSALDNRPLTFTEFENHINKVIFVSATPGEYELXRSPEP-AQQVIRPTGLLDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+E+R  + Q++D+  EI    ++  R+L+T LTKRMAEDL+ YL E  I+  Y+HS++ 
Sbjct: 419 PIEVRKTKGQIDDLIAEIRDRTEKRQRVLVTTLTKRMAEDLSNYLLELQIKTAYIHSDID 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER +I+RDLRLG +DVLVGINLLREGLD+PE  LVAI+DADKEGFLRS ++LIQT+GR
Sbjct: 479 TLERSDILRDLRLGIYDVLVGINLLREGLDLPEVSLVAIMDADKEGFLRSGSALIQTVGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+ N +VI+YADTITKS+Q AIDET RRRE Q  +NK+HNI P+ V + I E +  I+
Sbjct: 539 AARHENGQVIMYADTITKSMQYAIDETNRRREIQEAYNKEHNITPRGVDKVIDEGLRAII 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                     +D ++  + K +    ++ L  QM LAA NL FE+AA +RD ++ +K   
Sbjct: 599 PMKEEEKKPKVDLKK--IPKDEYGHLVRELTAQMELAAANLEFEKAAELRDTVEEIKKKM 656


>gi|320529473|ref|ZP_08030559.1| excinuclease ABC subunit B [Selenomonas artemidis F0399]
 gi|320138267|gb|EFW30163.1| excinuclease ABC subunit B [Selenomonas artemidis F0399]
          Length = 678

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/671 (52%), Positives = 466/671 (69%), Gaps = 2/671 (0%)

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
                 +  +   F++   + P GDQP AIA L  GI + +  Q+LLG TG+GKT+TMAK
Sbjct: 5   PKLNTTNLGEEIPFKVVAPFEPMGDQPHAIADLAGGIENGQTAQVLLGATGTGKTYTMAK 64

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           VIE +QRP +V+A NK LAAQL SEFK+FFP+N V YFVSYYDYYQPEAY+ +TDTYIEK
Sbjct: 65  VIERVQRPTLVIAHNKTLAAQLASEFKSFFPNNYVGYFVSYYDYYQPEAYIAQTDTYIEK 124

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           ++SIN++ID +RHSAT SL ER D I+V+SVSCIYG+GS ESY +M++ +  G ++ ++E
Sbjct: 125 DASINDEIDELRHSATCSLFERRDVIIVASVSCIYGLGSPESYHEMVLSVHKGQTIPREE 184

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           +L  LV  +Y+R DI   RG FRV GD +EIFP+   +   R+ MFG+++E I EF  ++
Sbjct: 185 ILQKLVSIRYERNDIAFERGRFRVRGDVVEIFPAGYNNRGVRIEMFGDEVERIIEFDVVS 244

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           G+         ++  SHYVT    +  AM  I+ EL+ +L  L+ EG+LLEAQRLEQR  
Sbjct: 245 GEIYGERLHSMVFPASHYVTEDEDMKIAMADIRTELEEQLAMLKGEGKLLEAQRLEQRTN 304

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           YDLEM++  G C  IENYSR+LT R  GE P TL +Y PED L+ +DESHVT+PQI  MY
Sbjct: 305 YDLEMMQEMGYCSGIENYSRHLTHRKAGETPYTLLDYFPEDFLIMIDESHVTLPQIHAMY 364

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
            GD  RK +L + GFRLPS  DNRPL F+E+       + VSATPG +E++Q    + +Q
Sbjct: 365 GGDRSRKVSLVDNGFRLPSAFDNRPLTFDEFAARVNQIVYVSATPGKYEMQQ-AQQVTQQ 423

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           IIRPTGL+DP VE+R    Q++D+  EI L  ++  R+L+T LTKRMAE LT+YL E  +
Sbjct: 424 IIRPTGLLDPVVEVRPLDGQIDDLLSEIRLRIERRERVLVTTLTKRMAEHLTDYLREAGV 483

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +VRY+HS++ T+ER EII DLR G+FDVLVGINLLREGLD+PE  L+AILDADKEGFLRS
Sbjct: 484 KVRYLHSDIATIERAEIIHDLRAGEFDVLVGINLLREGLDMPEVSLIAILDADKEGFLRS 543

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
            TSLIQTIGRAARN +  VI+Y D +T S++ AIDET RRRE Q  +NK+H I P+++ +
Sbjct: 544 DTSLIQTIGRAARNASGHVIMYGDVVTGSMRRAIDETERRREIQEAYNKEHGIVPKTIVK 603

Query: 728 KIMEVIDPILLEDAATT-NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
            ++ +I+  L+    T      D ++  L KK+ +  +KSL ++M  A+  L FE AA +
Sbjct: 604 PVVPLIEMTLVAAEGTAPYGKKDGKKKKLGKKERENLVKSLLREMQQASRALEFERAAEL 663

Query: 787 RDEIKRLKSSP 797
           RD I  L+   
Sbjct: 664 RDMIVELEGEL 674


>gi|118594781|ref|ZP_01552128.1| excinuclease ABC subunit B [Methylophilales bacterium HTCC2181]
 gi|118440559|gb|EAV47186.1| excinuclease ABC subunit B [Methylophilales bacterium HTCC2181]
          Length = 677

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/669 (54%), Positives = 485/669 (72%), Gaps = 4/669 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + + +   + P+GDQP AI +L +G+ + EK Q LLGVTGSGKTFT+A VI    + AIV
Sbjct: 8   SPYLLHKPFEPAGDQPDAIDKLTEGVTNGEKFQTLLGVTGSGKTFTIANVIARTGKSAIV 67

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MAPNK LAAQLYSEF+ FFPHNAVEYFVSYYDYYQPEAYVP  D +IEK+SSIN+ I++M
Sbjct: 68  MAPNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAYVPGRDVFIEKDSSINDHIEQM 127

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLERND I+V++VS IYGIG   +Y  M++ +++G+ + Q+ ++  LV  QY+
Sbjct: 128 RLSATKALLERNDSIIVATVSAIYGIGDPIAYQGMVLYIEVGEKLLQRNIILRLVSMQYE 187

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RG FRV GD I+IFP+   + A RVS+F + +E IS F PLTGQ    ++   
Sbjct: 188 RNDFDFSRGCFRVRGDVIDIFPAENSETAIRVSLFDDVVEGISTFDPLTGQIFEKIKRFT 247

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y +SHYVTPR T+  AM+ IK EL+ R+ E   + +L+EAQR+EQR  +DLEML   G 
Sbjct: 248 VYPSSHYVTPRDTVLNAMEKIKVELQSRIKEFVDQTKLVEAQRIEQRTKFDLEMLNEIGF 307

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+L+GR  GEP PTL +Y+P+D+L+ +DESHVTIPQI GM +GD  RK  L 
Sbjct: 308 CKGIENYSRHLSGRGEGEPAPTLLDYLPKDALMIIDESHVTIPQIGGMSKGDRARKNNLV 367

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPLRFEE+  + P TI VSATP ++E E  + IIVEQ+ RPTGL+DP 
Sbjct: 368 DYGFRLPSAHDNRPLRFEEFEKILPQTIFVSATPANYEAENSK-IIVEQVARPTGLIDPE 426

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + ++ A +QV+D+  EI L  Q+  R+L+T LTKRMAEDLT+YL E +I+VRY+HSE+ T
Sbjct: 427 IFVKPADSQVDDLLSEITLRVQKDERVLVTTLTKRMAEDLTDYLTEHSIKVRYLHSEIDT 486

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLGKFDV+VGINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQT GRA
Sbjct: 487 VERVEIIRDLRLGKFDVVVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTAGRA 546

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV---IDP 735
           ARN+N KVI Y ++IT+S++ AIDET RRR KQ++ NK +NI P  +K+KI ++   ++ 
Sbjct: 547 ARNLNGKVIFYGNSITRSMKAAIDETKRRRVKQIQFNKDNNITPVGIKKKIKDIIDGLED 606

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +            + +   L++ +    +  L K M   A +L+FE AA+ RD++K LK 
Sbjct: 607 VDEHKRVQEAKKENRKYEDLTEPQILKEISKLEKVMQKFARDLDFENAAKTRDQVKFLKE 666

Query: 796 SPYFQGLDD 804
             Y   + D
Sbjct: 667 RVYGANIKD 675


>gi|332974352|gb|EGK11281.1| excision endonuclease subunit UvrB [Psychrobacter sp. 1501(2011)]
          Length = 705

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/663 (55%), Positives = 482/663 (72%), Gaps = 9/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M TD+ P+GDQP AI +L+KGI +    QLLLGVTGSGKT+TMAKVI   QRP I+MA
Sbjct: 40  FEMVTDFEPAGDQPQAIEKLVKGIEAGMDAQLLLGVTGSGKTYTMAKVISETQRPTIIMA 99

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYV  +DT+IEK+S+IN+ ID+MR 
Sbjct: 100 HNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDSAINDHIDQMRL 159

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I++SSVS IYG+G  ESY +M++ + +GD V++  L+  LV  QY R 
Sbjct: 160 SATRALLERRDAIIISSVSSIYGLGDPESYLKMLLHIVVGDVVDRNALIKRLVALQYTRN 219

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RGT+R+ G+ ++I+P+  E +A R+SMF +++E+IS F PLTG+ +R+V  I IY
Sbjct: 220 ELDFERGTYRLRGELLDIYPAESEQLAVRISMFDDEVEKISWFDPLTGKTVRSVPRITIY 279

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  L  A K I+ EL  RL       +L+EAQR+++R  YDLEM++  G C 
Sbjct: 280 PKSHYVTPREKLEAASKTIRAELDERLEYFRANDKLIEAQRIKERTQYDLEMIQQLGYCN 339

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS++L+GR  GE PPTLF+YIP D+LLF+DESHVT+PQI  MY+GD  RK  L  Y
Sbjct: 340 GIENYSQHLSGRPAGEAPPTLFDYIPPDALLFIDESHVTVPQIGAMYKGDRSRKENLVNY 399

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRP++FEEW  ++PTTI VSATP  +ELE  +  IVEQ++RPTGL+DP +E
Sbjct: 400 GFRLPSAMDNRPMKFEEWEKIKPTTIFVSATPAQYELEHSEQ-IVEQVVRPTGLIDPEIE 458

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR   TQV+DV  EI    +   R+L+T LTKRM+EDLT+YL E +++V Y+HS++ T+E
Sbjct: 459 IRPVLTQVDDVLSEITKRREVNERVLITTLTKRMSEDLTDYLKEYDVKVAYLHSDIDTVE 518

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II +LR G  DVLVGINLLREGLD+PE  LVAI DADKEGFLRS+ SLIQTIGRAAR
Sbjct: 519 RMQIIHELRTGVHDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERSLIQTIGRAAR 578

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD IT S++ AI+ET RRREKQ+  N +H I P+S    I + ID   +E+
Sbjct: 579 NLNGKAILYADKITPSMEKAIEETDRRREKQIAFNLEHGIMPKSATRSITDKIDTGEVEE 638

Query: 741 AATTNISIDAQ--------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
               N +I +         ++  S       +  L KQM   +  L FE+AA++RD++  
Sbjct: 639 DLNDNQAIPSSSGLPDVDIEILRSPDLLAKEINRLEKQMKQFSRELKFEDAAKVRDKVLE 698

Query: 793 LKS 795
           L++
Sbjct: 699 LRA 701


>gi|313206739|ref|YP_004045916.1| excinuclease ABC, b subunit [Riemerella anatipestifer DSM 15868]
 gi|312446055|gb|ADQ82410.1| excinuclease ABC, B subunit [Riemerella anatipestifer DSM 15868]
 gi|325335821|gb|ADZ12095.1| Helicase subunit of the DNA excision repair complex [Riemerella
           anatipestifer RA-GD]
          Length = 678

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/665 (50%), Positives = 467/665 (70%), Gaps = 9/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L+ GI   +  Q LLGVTGSGKTFT+A V+  +QRP IV+A
Sbjct: 15  FKLHSEFKPTGDQPQAIDKLVSGIEQGQPYQTLLGVTGSGKTFTIANVVNTVQRPTIVLA 74

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEAY+  T TYIEK+ SINE+++++R 
Sbjct: 75  HNKTLAAQLFMEFKEFFPENAVEYFVSYYDYYQPEAYIASTGTYIEKDLSINEEVEKLRL 134

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT SLL  R D ++V+SVSCIYGIG+   +++ +++L++   + + +LL  LV   Y R
Sbjct: 135 SATTSLLSGRRDVLIVASVSCIYGIGNPTEFNKSLIELELQSKISRTDLLHKLVNALYSR 194

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                +RG+FRV GD I+IFP++ ++ A R+  FGN+I++I  F P++G  + + + I I
Sbjct: 195 AVNEFVRGSFRVKGDVIDIFPAYADN-AIRIRFFGNEIDKIQSFDPISGSIMGDFDKINI 253

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT + T+N+A++ I+++L  ++    + G+ LEA+RL++R   DLEM++  G C
Sbjct: 254 YPANLFVTSKETMNSAIREIQDDLVKQVDFFNEIGKNLEAKRLKERTELDLEMIKELGYC 313

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY+ GRNPG  P  L +Y P D L+ +DESHVTIPQ+  MY GD  RK  L E
Sbjct: 314 SGIENYSRYMDGRNPGSRPFCLLDYFPNDYLMVIDESHVTIPQVHAMYGGDRSRKENLVE 373

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  ++   I VSATP  +ELE+ QG  VEQIIRPTGL+DP +
Sbjct: 374 YGFRLPAAMDNRPLKFEEFESMQNQVIYVSATPADYELEKTQGEYVEQIIRPTGLLDPII 433

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+ +EI   A++  R+L+T LTK+MAE+LT+Y  +  IR RY+HS+V TL
Sbjct: 434 EVRPTLNQIDDLMEEIQKRAEEDERVLVTTLTKKMAEELTKYFTKFGIRTRYIHSDVDTL 493

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERI+I++DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEG LRS+ S+IQT+GRAA
Sbjct: 494 ERIQIMQDLRAGLFDVLVGVNLLREGLDLPEVSLVAILDADKEGMLRSRRSMIQTVGRAA 553

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N K I+YAD +TKS+Q  IDET  RREKQ+ +N+ + + PQ + +KI +V+     +
Sbjct: 554 RNINGKAIMYADKMTKSMQATIDETNYRREKQMSYNEANGLIPQPLNKKISDVLVGHTPD 613

Query: 740 -------DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                           + +    + +  +  +   +KQM  AA  L+F  AA++RDEIK 
Sbjct: 614 FPKQEYIQKEIVKQVAETKVSYGNAEDLEKIIAEKQKQMEAAAKQLDFILAAKLRDEIKA 673

Query: 793 LKSSP 797
           LK +P
Sbjct: 674 LKGTP 678


>gi|88856202|ref|ZP_01130862.1| excinuclease ABC subunit B [marine actinobacterium PHSC20C1]
 gi|88814521|gb|EAR24383.1| excinuclease ABC subunit B [marine actinobacterium PHSC20C1]
          Length = 690

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/681 (50%), Positives = 484/681 (71%), Gaps = 18/681 (2%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
             ++ +  F++ ++Y PSGDQP AI QL + I++ E   +LLG TG+GK+ T A +IE +
Sbjct: 2   EPTRSVRPFEVISEYTPSGDQPEAIRQLAQRINAGETDVVLLGATGTGKSATTAWLIEQV 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP ++M+ NK LAAQL +EF++  P+NAVEYFVSYYDYYQPEAY+P+TDT+IEK+SS+N
Sbjct: 62  QRPTLIMSHNKTLAAQLANEFRDLMPNNAVEYFVSYYDYYQPEAYIPQTDTFIEKDSSVN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
            +++R+RHS T SLL R D +VVS+VS IYG+G+ ESY + ++ L++G  ++++ L+   
Sbjct: 122 AEVERLRHSTTNSLLSRRDTVVVSTVSSIYGLGAAESYLEAMIALQVGMRIDRETLIRKF 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QY+R D    RG FRV GD+IEI P + E++A R+ MFG++IE +   +PLTG+ I+
Sbjct: 182 VGMQYQRNDYDFSRGNFRVRGDTIEIIPVY-EELAIRIEMFGDEIEALYSLHPLTGEIIK 240

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            ++ + ++  +HY     T+  A+  I+EEL  RL  LE++G+LLEAQRL  R T+D+EM
Sbjct: 241 QMDAVSVFPGTHYSASPDTIKRAIVSIQEELADRLGVLERQGKLLEAQRLRMRTTFDIEM 300

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           +E  G C  IENYS ++ GR PGEPP  L +Y PED L+ +DESHVT+PQI  MY GD  
Sbjct: 301 MEQIGFCNGIENYSLHMDGRQPGEPPSCLLDYFPEDFLVVIDESHVTVPQIGAMYEGDAS 360

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS +DNRPL++EE+       I +SATPG +EL      IVEQ+IRPT
Sbjct: 361 RKRTLVEHGFRLPSALDNRPLKWEEFLERAGQKIYLSATPGRYELGITDS-IVEQVIRPT 419

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP + ++ ++ Q++D+ ++I L  ++  RIL+T LTK+MAE+LTE+L E  +RVRY+
Sbjct: 420 GLIDPHIVVKPSKGQIDDLLEQIRLRVEKNERILVTTLTKKMAEELTEFLSEHGVRVRYL 479

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++ +LR G +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLI
Sbjct: 480 HSDVDTLRRVELLTELRQGVYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLI 539

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+ +V +YAD +T+S+Q AIDET RRREKQ+ +N +H I+PQ +++KI ++
Sbjct: 540 QTIGRAARNVSGEVHMYADVVTRSMQFAIDETDRRREKQVAYNTEHGIDPQPLRKKIADI 599

Query: 733 IDPILLEDAATTNI----SIDAQQLSLSKK------------KGKAHLKSLRKQMHLAAD 776
            D +L E A T  +    + D ++ + + +              +  +  L +QM  AA 
Sbjct: 600 TDALLREGADTAELLATRNRDGKKRTPTPRLSREGIAASGGNDLEQIIADLNEQMLQAAS 659

Query: 777 NLNFEEAARIRDEIKRLKSSP 797
            L FE AAR+RDE++ LK   
Sbjct: 660 ELKFELAARLRDEVQDLKKEL 680


>gi|94266611|ref|ZP_01290292.1| Excinuclease ABC, B subunit [delta proteobacterium MLMS-1]
 gi|93452757|gb|EAT03298.1| Excinuclease ABC, B subunit [delta proteobacterium MLMS-1]
          Length = 665

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/654 (55%), Positives = 460/654 (70%), Gaps = 4/654 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + +++ P+GDQP AI  L +G+ +    Q+LLGVTGSGKTFTMA+VI    RPA+V+
Sbjct: 1   MFDLVSEFAPAGDQPRAIELLSRGVMAGTPHQVLLGVTGSGKTFTMAQVIAETSRPALVL 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLYSEFK  FPHNAVEYFVSYYDYYQPEAY+P++DTYIEK+S+IN+ ID+MR
Sbjct: 61  APNKTLAAQLYSEFKELFPHNAVEYFVSYYDYYQPEAYIPQSDTYIEKDSAINDTIDQMR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H ATR+LL R D I+V+SVSCIYG+GS E Y  M + L++G+     E+   LV   Y+R
Sbjct: 121 HGATRALLTRRDVIIVASVSCIYGLGSPEEYLNMNLALQVGEDYPPAEIQRRLVHMLYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RGTFRV GD +EIFP H +D A RV +FG+ IE I    PL G     +E + +
Sbjct: 181 NDYSFHRGTFRVRGDVVEIFPVHEDDRALRVELFGDTIEAIRVVDPLRGVVHEELEEVTV 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT +   + A+K IK EL  RL EL    RLLEAQRLEQR  +DLEML+  G C
Sbjct: 241 FPGSHFVTSKERQDQAIKTIKAELTQRLAELHANKRLLEAQRLEQRTMFDLEMLQELGYC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+ T   PG PPPTL +Y P+D LLF DESHV IPQ+ GMYRGD  RK TL E
Sbjct: 301 HGIENYSRHFTRLPPGAPPPTLLDYFPDDYLLFTDESHVAIPQVRGMYRGDRSRKETLVE 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL F+E++      I VSATPG  ELE   G +VEQIIRPTGL+DP +
Sbjct: 361 YGFRLPSALDNRPLMFDEFSARVHQAIYVSATPGDHELEISGGRVVEQIIRPTGLMDPKI 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R A++QV+D+  EI   AQ+   IL+T LTKRMAEDL EY     +RVRY+HS++KTL
Sbjct: 421 EVRPAQSQVDDLLAEIRNRAQRDEAILVTTLTKRMAEDLCEYYRNIEVRVRYLHSDIKTL 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+E+IRDLR  ++DVLVGINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQT GRAA
Sbjct: 481 QRMELIRDLRRREYDVLVGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQTCGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN +  VILY D I+ ++   I ET RRRE Q E+N++H I P +++ KI +++  I  +
Sbjct: 541 RNAHGMVILYGDKISAAMAATIAETERRREIQAEYNREHGITPATIRSKIKDLLATIYEQ 600

Query: 740 DAATTNIS----IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           D  T  +      +      S+++ +  +K L K+M  AA  L FE+AA +RD 
Sbjct: 601 DYTTVELPEESVAEETPRFRSREELRREIKELEKEMTRAARELAFEDAAELRDR 654


>gi|312875888|ref|ZP_07735878.1| excinuclease ABC, B subunit [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797369|gb|EFR13708.1| excinuclease ABC, B subunit [Caldicellulosiruptor lactoaceticus 6A]
          Length = 661

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/660 (56%), Positives = 487/660 (73%), Gaps = 3/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +D+ P+GDQP AI  L +GI   EK Q LLGVTGSGKTFTMAKVIE +QRP +
Sbjct: 1   MKKFKLVSDFKPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSINE+ID+
Sbjct: 61  VLAHNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIY +GS E Y  + + L+ G   ++ E++  L++ QY
Sbjct: 121 LRHSATSALFERRDVIIVASVSCIYSLGSPEDYLNLTISLRPGMIKDRDEVIRELIRMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RG FRV GD +E+FP+   D A R+  FG++IE+I+EF  +TG+ I     +
Sbjct: 181 ERNDIDFRRGRFRVRGDVLEVFPASNTDRAIRIEFFGDEIEKITEFDVVTGEVIGRRNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYVT    L  A+K I+EEL+ RL EL   G+L+EAQRLEQR  YD+EML+  G
Sbjct: 241 AIFPASHYVTTAEKLKRAIKSIEEELEQRLKELRSMGKLVEAQRLEQRTRYDIEMLQEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSR+LTGR+PG PP TL +Y P+D ++F+DESHVTIPQ+  MY GD  RK TL
Sbjct: 301 FCKGIENYSRHLTGRSPGSPPYTLLDYFPKDFIMFIDESHVTIPQVRAMYNGDKARKDTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL FEE+       I VSATPG +EL++    IVEQIIRPTGLVDP
Sbjct: 361 VEYGFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYELKKS-SRIVEQIIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+   + Q++ +  EI    ++  R+L+T LTK+MAE LTEYL +  IRVRYMHS++ 
Sbjct: 420 EIEVHPVQGQIDHLIGEIRKRVEKNQRVLVTTLTKKMAESLTEYLKDVGIRVRYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ KVI+YAD IT ++Q AIDET RRR+ Q+E+N+KH I PQ+V++ I ++I+  +
Sbjct: 540 AARNVDGKVIMYADRITNAMQRAIDETNRRRKIQIEYNQKHRIIPQTVRKGIRQIIEATV 599

Query: 738 LEDAATTNISIDAQQ--LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                     +  ++   +++K++ + ++K L ++M   A  L FE+AA++RD+I  LK 
Sbjct: 600 SVAEEEEKYEVVEKEIVENMTKEEIEEYIKELEQEMKKFAIELEFEKAAKVRDKIFELKK 659


>gi|300865528|ref|ZP_07110313.1| excinuclease ABC subunit B [Oscillatoria sp. PCC 6506]
 gi|300336471|emb|CBN55463.1| excinuclease ABC subunit B [Oscillatoria sp. PCC 6506]
          Length = 667

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/664 (52%), Positives = 455/664 (68%), Gaps = 7/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q  + P+GDQP AIAQL  G+ + ++ Q LLG TG+GKTF++A VIE + RP +V+A
Sbjct: 5   FYLQAPFEPTGDQPKAIAQLTSGVLAGDRFQTLLGATGTGKTFSIAAVIEKVGRPTLVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP+NAVEYFVSYYDYYQPEAY+  TDTYIEK ++IN++ID +RH
Sbjct: 65  HNKTLAAQLCNELRGFFPNNAVEYFVSYYDYYQPEAYIAVTDTYIEKTAAINDEIDMLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y +  +  ++G  V Q++LL  LV  QY R 
Sbjct: 125 SATRSLFERRDAIVVASISCIYGLGMPAEYLKAAIPFQVGTEVNQRQLLRDLVNIQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +EI P++ ED   R+  FG++I+ I    P++G  I++VE + IY
Sbjct: 185 DLDLGRGKFRVKGDVLEIGPAY-EDRIIRIEFFGDEIDAIRYVDPVSGGIIQSVEALNIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT    L  A + I+ E++  + EL+K G+L+EAQRLEQR  YDLEML   G C 
Sbjct: 244 PARHFVTAEDKLEAACQAIEIEIEDSVEELKKAGKLVEAQRLEQRTRYDLEMLREVGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L GRN GEPP  L +Y P+D LL +DESHVT+PQ+ GMY GD  RK  L E+
Sbjct: 304 GVENYSRHLAGRNAGEPPECLIDYFPKDWLLVIDESHVTVPQLRGMYNGDQARKKVLIEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EE+       I VSATPG+WE+E  +  + +Q+IRPTGL+DP + 
Sbjct: 364 GFRLPSAADNRPLKAEEFWEKVNQCIFVSATPGNWEIEISESRVADQVIRPTGLIDPEIY 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EI        R L+T LTKRMAEDLTEYL ER IRVRY+HSE++++E
Sbjct: 424 VRPTEGQIDDLLGEIKERVLLQERTLVTTLTKRMAEDLTEYLQERGIRVRYLHSEIQSIE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI++ LR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 484 RIEILQSLRDGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK-----IMEVIDP 735
           +V  + ILY D +T S+  AIDET RRR  QL +NK H I PQS+ +K     I+  +D 
Sbjct: 544 HVRGQAILYGDNLTDSMIKAIDETDRRRGIQLAYNKMHGITPQSIAKKSSKNAILAFLDV 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               ++       + Q   LS ++    +  L  QM  AA  + FEEAA+ RD IK L+ 
Sbjct: 604 SRRLNSQHLETVYE-QIDELSLEEIPELIGQLEVQMKEAAKKMEFEEAAKFRDRIKHLRD 662

Query: 796 SPYF 799
               
Sbjct: 663 KLLG 666


>gi|295100025|emb|CBK89114.1| Excinuclease ABC subunit B [Eubacterium cylindroides T2-87]
          Length = 655

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/659 (52%), Positives = 459/659 (69%), Gaps = 4/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +DY P GDQP AI +L++G+   +K Q+LLG TG+GKTFT++ VI  + RP +
Sbjct: 1   MDKFELVSDYKPMGDQPTAIKELVQGLKDHKKYQVLLGATGTGKTFTVSNVIAQVNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V A NK LA QLYSEFK FFP+N VEYFVSY+DYYQPEAY+P+TDTYI+K +  NE++D 
Sbjct: 61  VFAHNKTLAGQLYSEFKEFFPNNRVEYFVSYFDYYQPEAYLPKTDTYIDKNTKTNEELDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R +A  S+LER D I+V+SV+ IYG  + E Y  MI  L+ G ++++ EL+ +LV QQY
Sbjct: 121 LRMAAVNSVLERRDTIIVASVASIYGASNPEQYRHMIFTLRTGQTIDRNELMLALVHQQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR D   +RGTFRV GD IEI P H +    R+ +F ++IE I E  P+TG   +     
Sbjct: 181 KRNDTDPLRGTFRVRGDVIEITPGHTDRYLIRIELFDDEIERICEVDPVTGHVNQAYHLY 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + Y T    +  A   I+EEL+ RL   +K G+ LE +RLEQR  YD+E L+  G
Sbjct: 241 IIYPANGYATSMDVIKRAAASIEEELEDRLDYFDKMGKPLEKERLEQRCRYDIEALKEFG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR++ GR PGE P TLF+Y P+D LL VDESHV++PQI GMY GD  RK  L
Sbjct: 301 VCPGIENYSRHIDGRKPGERPYTLFDYFPDDFLLVVDESHVSLPQIRGMYNGDRARKEVL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPLRFEE+  + P+ I VSATPG +ELE+  G ++EQIIRPTGL+DP
Sbjct: 361 VEYGFRLPSALDNRPLRFEEFESIIPSAIFVSATPGDYELEKVDGHVIEQIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++D+ DEI +  ++  R L+T LT RMAEDLT YL   +++V ++H EV 
Sbjct: 421 EVEVRPIEGQIDDLVDEIKMRIKKNQRTLITTLTVRMAEDLTSYLKNMDLKVAWLHHEVT 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER EII DLR GK+DVLVGINLLREGLDIPE  L+AILDADKEGFLRSK SLIQ IGR
Sbjct: 481 TIERTEIIHDLRQGKYDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSKRSLIQIIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   KVI+YADTIT+S+Q AIDET RRR  Q+E+NK+HNI P+++ + I +V+    
Sbjct: 541 AARNAEGKVIMYADTITESMQYAIDETNRRRSIQIEYNKEHNIVPKTIIKPIHDVVRSKE 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            ++ A   +              +  LK++ ++M  AA  L+FE AA++RD +  LK+ 
Sbjct: 601 TKEMAAKYLKKKKVGAKQ----KEVMLKNIEQEMKEAARTLDFERAAQLRDILLELKAE 655


>gi|256829853|ref|YP_003158581.1| excinuclease ABC subunit B [Desulfomicrobium baculatum DSM 4028]
 gi|256579029|gb|ACU90165.1| excinuclease ABC, B subunit [Desulfomicrobium baculatum DSM 4028]
          Length = 670

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/664 (52%), Positives = 463/664 (69%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ++++Y P GDQPAAI  L  GI    + Q+LLGVTGSGKTFTM  VI  + RPA+
Sbjct: 1   MSLFQLESEYVPRGDQPAAIDALCSGIRQGVRDQVLLGVTGSGKTFTMGHVIARLDRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MAPNK LAAQLY+EFK  FP NAVEYFVSYYDYYQPEAY+P +DTYIEK+S+IN+ ID+
Sbjct: 61  IMAPNKTLAAQLYNEFKGLFPRNAVEYFVSYYDYYQPEAYLPHSDTYIEKDSAINDDIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+AT +LL R D I+++SVSCIYG+GS E Y++M++ ++ G  V  + ++  LV  QY
Sbjct: 121 LRHAATHALLTRRDVIIIASVSCIYGLGSPEYYAKMVIPVECGQHVAMETVIGRLVDVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D  + RGTFRV GD +EI P++  + A R+  FG++I+ I E  PLTG+ +  V+  
Sbjct: 181 ERNDYDLHRGTFRVRGDVLEIIPAYEHEQALRLEFFGDEIDGIYETDPLTGEILSRVQKT 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SHYV+ R  L  AM  I++EL++RL   +    L+EAQRLEQ+   DLEM+E  G
Sbjct: 241 VIYPASHYVSDRDNLVRAMADIRDELRLRLQYFQDNNMLVEAQRLEQKTQLDLEMIEELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYS +L GR  G+PP TL +Y P+D LLF+DESH+++ Q+  M++GD  RK TL
Sbjct: 301 YCNGIENYSLHLDGRRTGQPPSTLIDYFPKDFLLFMDESHISVSQVGAMFKGDRSRKQTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL FEE+     TT+ VSATP  WELE+ QG++VEQIIRPTGLVDP
Sbjct: 361 VDYGFRLPSALDNRPLNFEEFLERIGTTVFVSATPAPWELERAQGVVVEQIIRPTGLVDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+     Q++ +  +         R+++T LTKRMAEDLTE+L  R +R RY+HS++ 
Sbjct: 421 QIEVVPTAGQMDHLMAQCLARIAVDERVMVTTLTKRMAEDLTEFLQARGVRARYLHSDID 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+ II+ LR G+FDVLVGINLLREGLDIPE  LVA+LDADKEGFLRS  SLIQT GR
Sbjct: 481 TLERVAIIQALRAGEFDVLVGINLLREGLDIPEVSLVAMLDADKEGFLRSTRSLIQTFGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  KV+LYADT+T+S+  A+ ET RRRE+Q  +N++H I PQS+++     +  + 
Sbjct: 541 AARNVKGKVLLYADTVTRSMAEAMGETQRRRERQTLYNEEHGITPQSIRKTSENTLYDLH 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            E       +          +     +  L ++M  AA+ L FEEAARIRD IK L+   
Sbjct: 601 REIKEQERAAERTADYDPGPENAAKEVARLSREMRKAAEMLEFEEAARIRDRIKTLEKRY 660

Query: 798 YFQG 801
              G
Sbjct: 661 GLDG 664


>gi|73748283|ref|YP_307522.1| excinuclease ABC subunit B [Dehalococcoides sp. CBDB1]
 gi|90110884|sp|Q3ZZK7|UVRB_DEHSC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|73659999|emb|CAI82606.1| excinuclease ABC, subunit B [Dehalococcoides sp. CBDB1]
          Length = 664

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/663 (51%), Positives = 458/663 (69%), Gaps = 4/663 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +D+  +GDQP A+ +L KG+ S    Q LLGVTGSGKTFTMA VI  + RP +
Sbjct: 1   MPSFKIVSDFALTGDQPQAVEKLAKGLVSGLTDQTLLGVTGSGKTFTMANVIARVNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLYSE K F P N+VEYFVSYYDYYQPEAYVP+ D YIEK+S INE+ID+
Sbjct: 61  IISHNKTLAAQLYSEMKEFLPENSVEYFVSYYDYYQPEAYVPQKDMYIEKDSDINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+ATR+L ER D ++V+SVSCIYG+G  E Y   ++ LK G S  +  +L  LV  QY
Sbjct: 121 LRHAATRALFERRDVVIVASVSCIYGLGEPEEYRSFVLPLKKGQSFRRDLILRRLVDMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RG FR+ GD++EI P++ E++A RV  FG++IE I    P++G+ +  +E I
Sbjct: 181 ERNDLDFSRGKFRLRGDTLEIQPAY-EELALRVEFFGDEIERIVSLDPVSGELLAGIEEI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VT    +  A+K I+ EL+ RL ELE EG++LEA RL+QR  YDLEM+E  G
Sbjct: 240 NIYPAKHFVTSAEKMAEAIKSIQAELEDRLKELEAEGKMLEAARLKQRTNYDLEMMEQAG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  G  P TL +Y PED LL VDESH+++PQI GMY GD  RK TL
Sbjct: 300 YCSGVENYSRHLAGRKAGSAPWTLLDYFPEDFLLIVDESHMSLPQIRGMYAGDSARKKTL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS MDNRPL F+E+       I VSATPG +E E     +VEQ++RPTGL++P
Sbjct: 360 VDYGFRLPSAMDNRPLSFDEFKARVKQAIYVSATPGPYEKEHSLQ-VVEQLVRPTGLLEP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++    Q++D+ +E+     +  R+L+T LTK+M+E L +YL E  ++  Y+HSEV 
Sbjct: 419 VMTVKPTVGQIDDLLEEVKKRVAKNERVLITTLTKKMSEKLADYLVEMGVKTHYLHSEVD 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS+ +LIQT+GR
Sbjct: 479 TLERIEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V+ +VI+YAD IT S+Q A+DE  RRR+ Q ++N+ HNI PQ +++ I ++ + I 
Sbjct: 539 AARHVDGQVIMYADKITGSMQRAMDEIIRRRKIQEDYNRLHNITPQGIRKAIKDINERIR 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
              A  +            ++     +K L  QM  AA NL FE AA IRD +  L+++ 
Sbjct: 599 SVTAEVSGPEFRPTPTL--REDIARLIKELESQMKKAAKNLEFERAALIRDRVVELRAAL 656

Query: 798 YFQ 800
              
Sbjct: 657 EID 659


>gi|307326043|ref|ZP_07605241.1| excinuclease ABC, B subunit [Streptomyces violaceusniger Tu 4113]
 gi|306888265|gb|EFN19253.1| excinuclease ABC, B subunit [Streptomyces violaceusniger Tu 4113]
          Length = 712

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/704 (50%), Positives = 473/704 (67%), Gaps = 37/704 (5%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             +    + +  F++ + Y PSGDQP AIA L + +   EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVTQLERKVAPFEVVSSYQPSGDQPTAIADLERRVRGGEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D IVV+SVSCIYG+G+ + Y   +V+LK+G+ +++ +L
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVRLKVGEEIDRDQL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG
Sbjct: 182 LRRFVDIQYARNDMAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I     + ++  SHYV     +  A+  I+ EL   L  LEK+G+LLEAQRL  R TY
Sbjct: 241 EVISEDRELYVFPASHYVAGPERMEKAIAGIEAELTETLARLEKQGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G+C  IENYS ++ GR  G PP TL +Y PED LL +DESHVT+PQI  MY 
Sbjct: 301 DIEMMRQIGTCSGIENYSLHIDGRETGSPPHTLLDYFPEDFLLVIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G  VEQI
Sbjct: 361 GDASRKRTLIEHGFRLPSALDNRPLKWEEFLKRVGQTVYLSATPGPFELSRGDG-FVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGL+DP V ++    Q++D+  EI    ++  R+L+T LTK+MAEDLT+Y+ E  I+
Sbjct: 420 IRPTGLIDPEVVVKPTEGQIDDLIHEIRTRTEKDERVLVTTLTKKMAEDLTDYMLELGIQ 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL R+E++R+LR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 480 VRYLHSDVDTLRRVELLRELRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD +T ++  AIDET RRR+KQ+ +NK + I+PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADKVTAAMAKAIDETNRRRDKQIAYNKANKIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI-----------------------------------SIDAQQL 753
           I +++  I  ED  T  +                                   + +    
Sbjct: 600 INDIVAQIAREDVDTEQLLGTGYRKVKDGKDAKTPVPAAGGKAAKGGKAAKGKAKEEVLT 659

Query: 754 SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                +    ++ +  +M  AA  L FE AAR+RDE+  LK   
Sbjct: 660 DRPAAELAEQIEEMTDRMRAAAAELQFEVAARLRDEVSELKKEL 703


>gi|159904316|ref|YP_001551660.1| excinuclease ABC subunit B [Prochlorococcus marinus str. MIT 9211]
 gi|238687131|sp|A9BD93|UVRB_PROM4 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|159889492|gb|ABX09706.1| Excinuclease ABC subunit B (UvrB) [Prochlorococcus marinus str. MIT
           9211]
          Length = 679

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/676 (50%), Positives = 463/676 (68%), Gaps = 17/676 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  + + + Y P GDQP AI++L+ G++  ++ Q LLG TG+GKTFT+A VIE   RP +
Sbjct: 1   MHKYHLNSPYLPKGDQPKAISELVYGVNQGKQYQTLLGATGTGKTFTIANVIEQTGRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K SS+NE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIAKTSSVNEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G+ +  +E L  LV  QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPSEYLKASVKFQLGNDINVRESLRELVSNQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ I RG FR+ GD +EI P++ ED   R+ +FG+++E I    P+TG+ + N+ +I
Sbjct: 181 VRNDVDISRGNFRIKGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPITGEILENLNSI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP+  L  A++ I++ELK +L    +EG+LLEAQRLEQR  YD+EML+  G
Sbjct: 240 NIYPAKHFVTPKDRLLIAIQSIQKELKDQLDFFNQEGKLLEAQRLEQRTKYDIEMLKEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L+GR+ G PP  L +Y PED LL VDESHVT  Q+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLSGRDQGTPPECLIDYFPEDWLLVVDESHVTCSQLQAMYNGDQSRKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+ +E+      T+ +SATPG WE E     IVEQ+IRPTG++DP
Sbjct: 360 IDHGFRLPSAADNRPLKSDEFWSKAKQTVFISATPGDWECEVSTDGIVEQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++D+ DEI     +  R+L+T LTKRMAEDL++YL E  ++VRY+HSE+ 
Sbjct: 420 VVEVRPTAGQIDDLLDEIRKRVIKKERVLITTLTKRMAEDLSDYLSENRVKVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLR+G++DVLVG+NLLREGLD+PE  LV ILDADKEGFLR+K SLIQTIGR
Sbjct: 480 SIERIEIIQDLRVGEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAKRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V+   +LYAD +T+S+  AI ET RRR  Q  +N+KH I P+   +K    I   L
Sbjct: 540 AARHVDGFALLYADNLTESMSTAIQETERRRAIQQAYNQKHGIIPKPAGKKPSNSILSFL 599

Query: 738 LEDAATTNISIDAQQLSLSKK----------------KGKAHLKSLRKQMHLAADNLNFE 781
                  N   +A  +S++ K                +    +  L  +M+LAA+ L+FE
Sbjct: 600 ELSRKLQNEGDNADLVSITSKAVDSLNQSEDLGIAFVELPEIIDKLEGKMNLAAEELDFE 659

Query: 782 EAARIRDEIKRLKSSP 797
           +AA++RD I++L+   
Sbjct: 660 QAAKLRDRIRQLRKKL 675


>gi|320531289|ref|ZP_08032265.1| excinuclease ABC subunit B [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320136492|gb|EFW28464.1| excinuclease ABC subunit B [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 698

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/692 (50%), Positives = 478/692 (69%), Gaps = 25/692 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             +    +    F++ + Y PSGDQPAAIA+L + + + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVTELQRVAKPFEVVSPYSPSGDQPAAIAELTERLRAGEKDIVLLGATGTGKSATTAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           +E +QRP +++ PNK LAAQ+ +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+
Sbjct: 62  VEQVQRPTLILEPNKTLAAQMAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN++++R+RHSAT SLL R D +VVSSVSCIYG+G+ + Y   +  L++G  +++ +L
Sbjct: 122 SSINDEVERLRHSATNSLLTRRDVVVVSSVSCIYGLGTPQEYVDRMTPLEVGQQIDRDDL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R DI   RGTFRV GD++EI P + E++A R+  FG++IE ++  +P+TG
Sbjct: 182 LRRFVTMQYTRNDIDFTRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIEALATLHPVTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             I  V  + ++  SHYV     +  A++ I+ EL  RL +LE +GRLLEAQRL  R TY
Sbjct: 241 DVIDTVGQVFVFPASHYVAGPERMQKAIEGIEAELAERLAQLEHDGRLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C  IENYS ++ GR  G PP TL +Y PED LL +DESHVT+PQI  M+ 
Sbjct: 301 DLEMLQQIGMCSGIENYSLHIDGREVGTPPNTLLDYFPEDFLLVIDESHVTVPQIGAMHE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL F E+      T+ +SATPG +E ++  G +VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLTFAEFEDRIGQTVYLSATPGDYETQRSDG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    QV+D+ +E+    ++  RIL+T LTKRMAEDLT YL ER +R
Sbjct: 420 IRPTGLVDPKVVVKPTEGQVDDLLEEVRTRVERQERILVTTLTKRMAEDLTTYLAERGVR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y+HS+V TL R+E++R+LRLG+FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS 
Sbjct: 480 VEYLHSDVDTLRRVELLRELRLGRFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRST 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +V +YADTIT ++  AI+ET RRR KQL +N +H I+PQ +++K
Sbjct: 540 RSLIQTIGRAARNVSGEVHMYADTITPAMAEAIEETERRRTKQLAYNTEHGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI-----------------------SIDAQQLSLSKKKGKAHLK 765
           I +V D +  ED  T ++                       ++  +    ++      + 
Sbjct: 600 IADVTDMLAREDVDTADLLAGGYRGHEDSSIRARRKHAAEATVRERLAGAAQGDLVELIN 659

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            L +QMH AA++L+FE AAR+RDEI+ LK   
Sbjct: 660 ELTQQMHAAAEDLHFELAARLRDEIQDLKKEL 691


>gi|289432332|ref|YP_003462205.1| excinuclease ABC subunit B [Dehalococcoides sp. GT]
 gi|288946052|gb|ADC73749.1| excinuclease ABC, B subunit [Dehalococcoides sp. GT]
          Length = 664

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/663 (50%), Positives = 458/663 (69%), Gaps = 4/663 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +D+  +GDQP A+ +L +G+ S    Q LLGVTGSGKTFTMA VI  + RP +
Sbjct: 1   MPSFKIVSDFALTGDQPQAVEKLAEGLVSGLTDQTLLGVTGSGKTFTMANVIARVNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLYSE K F P N+VEYFVSYYDYYQPEAYVP+ D YIEK+S INE+ID+
Sbjct: 61  IISHNKTLAAQLYSEMKEFLPENSVEYFVSYYDYYQPEAYVPQKDMYIEKDSDINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+ TR+L ER D ++V+SVSCIYG+G  E Y   ++ LK G S  +  +L  LV  QY
Sbjct: 121 LRHATTRALFERRDVVIVASVSCIYGLGEPEEYHSFVLPLKKGQSFRRDLILRRLVDMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RG FR+ GD++EI P++ E++A RV  FG++IE I    P++G+ + ++E I
Sbjct: 181 ERNDLDFSRGKFRLRGDTLEIQPAY-EELALRVEFFGDEIERIVSLDPVSGELLADIEEI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VT    +  A+K I+ EL+ RL ELE EG++LEA RL+QR  YDLEM+E  G
Sbjct: 240 NIYPAKHFVTSAEKMAEAIKSIQAELEDRLKELEAEGKMLEAARLKQRTNYDLEMMEQAG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  G  P TL +Y PED LL VDESH+++PQI GMY GD  RK TL
Sbjct: 300 YCSGVENYSRHLAGRKAGSAPWTLLDYFPEDFLLIVDESHMSLPQIRGMYAGDSARKKTL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS MDNRPL F+E+       I VSATPG +E E     +VEQ++RPTGL++P
Sbjct: 360 VDYGFRLPSAMDNRPLSFDEFKARVKQAIYVSATPGPYEKEHSLQ-VVEQLVRPTGLLEP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++    Q++D+ +E+     +  R+L+T LTK+M+E L +YL E  ++  Y+HSEV 
Sbjct: 419 VMTVKPTVGQIDDLLEEVKKRVAKNERVLITTLTKKMSEKLADYLVEMGVKTHYLHSEVD 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS+ +LIQT+GR
Sbjct: 479 TLERIEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V+ +VI+YAD IT S+Q A+DE  RRR+ Q ++N+ HNI PQ +++ I ++ + I 
Sbjct: 539 AARHVDGQVIMYADKITGSMQRAMDEIIRRRKIQEDYNRLHNITPQGIRKAIKDINERIR 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
              A  +            ++     +K L  QM  AA NL FE AA IRD +  L+++ 
Sbjct: 599 SVTAEVSGPEFRPTPTL--REDIARLIKELESQMKKAAKNLEFERAALIRDRVVELRAAL 656

Query: 798 YFQ 800
              
Sbjct: 657 EID 659


>gi|313895915|ref|ZP_07829469.1| excinuclease ABC, B subunit [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975340|gb|EFR40801.1| excinuclease ABC, B subunit [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 678

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/671 (52%), Positives = 466/671 (69%), Gaps = 2/671 (0%)

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
                 +  +   F++   + P GDQP AIA L  GI + +  Q+LLG TG+GKT+TMAK
Sbjct: 5   PKLNTTNLGEEIPFKVIAPFEPMGDQPHAIADLAGGIENGQTAQVLLGATGTGKTYTMAK 64

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           VIE +QRP +V+A NK LAAQL SEFK+FFP+N V YFVSYYDYYQPEAY+ +TDTYIEK
Sbjct: 65  VIERVQRPTLVIAHNKTLAAQLASEFKSFFPNNYVGYFVSYYDYYQPEAYIAQTDTYIEK 124

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           ++SIN++ID +RHSAT SL ER D I+V+SVSCIYG+GS ESY +M++ +  G ++ ++E
Sbjct: 125 DASINDEIDELRHSATCSLFERRDVIIVASVSCIYGLGSPESYHEMVLSVHKGQTIPREE 184

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           +L  LV  +Y+R DI   RG FRV GD +EIFP+   +   R+ MFG+++E I EF  ++
Sbjct: 185 ILQKLVSIRYERNDIAFERGRFRVRGDVVEIFPAGYNNRGVRIEMFGDEVERIIEFDVVS 244

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           G+         ++  SHYVT    +  AM  I+ EL+ +L  L+ EG+LLEAQRLEQR  
Sbjct: 245 GEIYGERLHSMVFPASHYVTEDEDMKIAMADIRTELEEQLAMLKGEGKLLEAQRLEQRTN 304

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           YDLEM++  G C  IENYSR+LT R  GE P TL +Y PED L+ +DESHVT+PQI  MY
Sbjct: 305 YDLEMMQEMGYCSGIENYSRHLTHRKAGETPYTLLDYFPEDFLIMIDESHVTLPQIHAMY 364

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
            GD  RK +L + GFRLPS  DNRPL F+E+       + VSATPG +E++Q    + +Q
Sbjct: 365 GGDRSRKVSLVDNGFRLPSAFDNRPLTFDEFAARVNQIVYVSATPGKYEMQQ-AQQVTQQ 423

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           IIRPTGL+DP VE+R    Q++D+  EI L  ++  R+L+T LTKRMAE LT+YL E  +
Sbjct: 424 IIRPTGLLDPVVEVRPLDGQIDDLLSEIRLRIERRERVLVTTLTKRMAEHLTDYLREAGV 483

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +VRY+HS++ T+ER EII DLR G+FDVLVGINLLREGLD+PE  L+AILDADKEGFLRS
Sbjct: 484 KVRYLHSDIATIERAEIIHDLRAGEFDVLVGINLLREGLDMPEVSLIAILDADKEGFLRS 543

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
            TSLIQTIGRAARN +  VI+Y D +T S++ AIDET RRRE Q  +NK+H I P+++ +
Sbjct: 544 DTSLIQTIGRAARNASGHVIMYGDVVTGSMRRAIDETERRREIQEAYNKEHGIVPKTIVK 603

Query: 728 KIMEVIDPILLEDAATT-NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
            ++ +I+  L+    T      D ++  L KK+ +  +KSL ++M  A+  L FE AA +
Sbjct: 604 PVVPLIEMTLVAAEGTAPYGKKDGKKKKLGKKERENLVKSLLREMQQASRALEFERAAEL 663

Query: 787 RDEIKRLKSSP 797
           RD I  L+   
Sbjct: 664 RDMIVELEGEL 674


>gi|46445808|ref|YP_007173.1| excinuclease ABC subunit B [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81627729|sp|Q6MEV1|UVRB_PARUW RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|46399449|emb|CAF22898.1| probable Helicase subunit B of the DNA excision repair complex
           (excinuclease ABC) [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 673

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/662 (54%), Positives = 469/662 (70%), Gaps = 6/662 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ+ T++ P GDQP AI QL+  I   ++ Q+LLG+TGSGKTFTMA VI  +QRP +++
Sbjct: 6   LFQLHTEFEPCGDQPEAINQLVASILQNKRSQVLLGITGSGKTFTMANVIAKVQRPTLIL 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK+ SIN++ID+MR
Sbjct: 66  AHNKTLAAQLYQEFKAFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKDMSINDKIDKMR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SATRSLLER+D I+VSSVSCIYG+GS E Y  M + L  G    + ++L  LV+ QYKR
Sbjct: 126 LSATRSLLERSDVIIVSSVSCIYGLGSPEYYRGMNLTLSQGQMRRRDDILLHLVEMQYKR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D   IR TFRV GD ++IFP++ ED+A RV MFG++IE+ISE  PLTG+  R + +I I
Sbjct: 186 NDFEFIRSTFRVRGDVLDIFPAYEEDLAIRVEMFGDEIEQISEIDPLTGKVKRRIASITI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y +SH+VTP      AM+ I+ EL  R    E E + LE +R++QR  YDLEML+  G+C
Sbjct: 246 YPSSHHVTPEEIRLKAMETIRAELDERRQFYETEKKYLELERIQQRTMYDLEMLKEVGTC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           + IENYSR+ + R PG PPP L +Y P D LL +DESH T+PQ+  M+ GD  RK TL +
Sbjct: 306 KGIENYSRHFSMRQPGAPPPCLLDYFPSDYLLVIDESHQTLPQVHAMFNGDRARKQTLVD 365

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS  DNRPLRFEE        + VSATPG+WE+++  G IVEQ+IRPTGL+DP +
Sbjct: 366 FGFRLPSAFDNRPLRFEEVYGRIHQVVYVSATPGAWEVQEAGGEIVEQLIRPTGLLDPII 425

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR A  QV+D   EI     +G R+LLT LTK+++E+LT YL + N++ +Y+HS++ T+
Sbjct: 426 EIRPASGQVDDCLAEIRSHVSKGGRVLLTTLTKKLSEELTTYLNDLNVKAKYLHSDIDTI 485

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++IIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQT GRAA
Sbjct: 486 ERVQIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTCGRAA 545

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-- 737
           RN   +VI+YAD ITKSI+  ++ T  RR  Q+ +N++H I P++VK +I  +++     
Sbjct: 546 RNAEGRVIMYADKITKSIKRTLEITESRRALQMRYNEQHGITPRTVKREISVLMESEEDQ 605

Query: 738 ----LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                +       + +     L+  + +  +K   K+M  AA    FEEAA  RD+++R 
Sbjct: 606 VTHPTKLEEEIFKAAEEAHHYLTLDEVRLKIKECEKEMKKAAKEFRFEEAADWRDQMRRY 665

Query: 794 KS 795
           + 
Sbjct: 666 QQ 667


>gi|295134952|ref|YP_003585628.1| excinuclease ABC subunit B [Zunongwangia profunda SM-A87]
 gi|294982967|gb|ADF53432.1| excinuclease ABC subunit B [Zunongwangia profunda SM-A87]
          Length = 668

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/660 (51%), Positives = 463/660 (70%), Gaps = 7/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++DY P+GDQP AI QL+ GI   ++ Q LLGVTGSGKTFT+A VIE +Q+P +V+A
Sbjct: 3   FKIESDYKPTGDQPNAIKQLVGGIEKNDQFQTLLGVTGSGKTFTVANVIEEVQKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEA++P + TYIEK+ SIN++I+++R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPNNAVEYFVSYYDYYQPEAFIPSSGTYIEKDLSINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IVV+SVSC+YGIG+   + + +V ++    + + + L SLV+  Y R
Sbjct: 123 STTSSLLSGRRDVIVVASVSCLYGIGNPVEFRKNVVSIERDMEISRTKFLHSLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +   + G FR+ GD++++FPS+ ++ A+R+  FG++IE+I  F P T   I   E + I
Sbjct: 183 TEAEFVHGNFRIKGDTVDVFPSYADN-AFRIHFFGDEIEDIEAFDPATNDVIEKYERLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A++ I+++L  ++      G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLQNAIRNIQDDLVKQVDYFRDIGKHLEAKRLDERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ VDESHVTIPQ+  MY GD  RK TL +
Sbjct: 302 SGIENYSRYLDGRQPGTRPFCLLDYFPDDFLMVVDESHVTIPQVHAMYGGDRSRKETLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL++ +G+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEILQNQVIYVSATPADYELQKSEGVYVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R ++ Q++D+ +EI +  ++  R L+T LTKRMAE+L +YL   +IR RY+HS+V TL
Sbjct: 422 EVRPSQNQIDDLIEEIQIRVEKDERTLVTTLTKRMAEELAKYLTRIDIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAI+DADKEGFLRS  SL QTIGRAA
Sbjct: 482 ERVEIMQDLRRGLFDVLIGVNLLREGLDLPEVSLVAIIDADKEGFLRSNRSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-----D 734
           RNV  K ILYAD IT S+Q  +DET  RR KQ+ +NK HNI P+ + +K+          
Sbjct: 542 RNVEGKAILYADKITDSMQKTMDETEYRRTKQMNYNKAHNITPKPLVKKLESSTLVKKKL 601

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            I   D      + + +   L+K +    ++  RKQM  AA  L+F EAAR+RDEIK L+
Sbjct: 602 EIFEGDNKPPMQAAEEEGAYLTKPQIDKKIREKRKQMETAAKELDFMEAARLRDEIKILQ 661


>gi|227537637|ref|ZP_03967686.1| excision endonuclease subunit B [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242523|gb|EEI92538.1| excision endonuclease subunit B [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 677

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/669 (51%), Positives = 485/669 (72%), Gaps = 14/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI +L+ G++  E  Q LLGVTGSGKTFT+A VI+  Q+PA++++
Sbjct: 3   FKLTSEYQPTGDQPQAIKELVAGVNEGETYQTLLGVTGSGKTFTIANVIQETQKPALILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP N+V YFVSYYDYYQPEA++  ++TYIEK+ +INE+I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPENSVNYFVSYYDYYQPEAFIASSNTYIEKDLAINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           + T SL+  R D +VVSSVSCIYG+G+ E +S+ I +  +G ++ +   L  LV+  Y R
Sbjct: 123 ATTSSLMSGRRDIVVVSSVSCIYGMGNPEDFSRSIFRFAVGTTISRNAFLHKLVEILYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD+++++P++L D A RVS FG++I+E+S   P++ + I  +E + +
Sbjct: 183 TTAEFKRGTFRVKGDTVDVYPAYL-DYAIRVSFFGDEIDELSAIDPVSAKTINKMEDLAL 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VTP+     ++  I++EL  R  +LE EG++LEA+RLE+R+ YDLEM+   G C
Sbjct: 242 FPANLFVTPKEKFTQSIWAIQDELMQRKTQLEDEGKMLEAKRLEERVNYDLEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GR PG  P TL +Y P+D LL +DESHVTIPQ+  MY GD  RK +L E
Sbjct: 302 SGIENYSRFFDGRQPGMRPFTLLDYFPDDYLLVIDESHVTIPQLRAMYGGDRSRKVSLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL F E+  L   TI VSATPG +EL+Q +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAALDNRPLNFPEFESLTNQTIYVSATPGDYELQQTEGVVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R A  QV+D  ++++   ++G R+L T LTKRMAE+LT+Y+   NI+VRY+HSEVKTL
Sbjct: 422 EVRPAINQVDDFLEQVDKTIKEGGRVLATTLTKRMAEELTKYMTRLNIKVRYIHSEVKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R LRLG+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAA
Sbjct: 482 ERVEILRGLRLGEFDVLVGVNLLREGLDLPEVTLVAILDADKEGFLRSERSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP---- 735
           RN   +VI+YAD +T S+++ IDET RRREKQ+++N++H+I P++V +   E+++     
Sbjct: 542 RNDKGRVIMYADKMTDSMRITIDETNRRREKQMKYNEEHHITPRTVGKTREEIMEQTSVA 601

Query: 736 --------ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                   I +E   T  ++ D     LS+K  K  +++ +K+M  AA  ++F EAA++R
Sbjct: 602 DFNGMEPKIYVEPDPTVAVAADPVMQYLSEKDLKKAIETTKKRMEKAAKEMDFLEAAKLR 661

Query: 788 DEIKRLKSS 796
           DE+  L+ +
Sbjct: 662 DEMFSLEKA 670


>gi|147669063|ref|YP_001213881.1| excinuclease ABC subunit B [Dehalococcoides sp. BAV1]
 gi|146270011|gb|ABQ17003.1| excinuclease ABC, B subunit [Dehalococcoides sp. BAV1]
          Length = 664

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/663 (50%), Positives = 458/663 (69%), Gaps = 4/663 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +D+  +GDQP A+ +L +G+      Q LLGVTGSGKTFTMA VI  + RP +
Sbjct: 1   MPSFKIVSDFALTGDQPQAVEKLAEGLVRGLTDQTLLGVTGSGKTFTMANVIARVNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLYSE K F P N+VEYFVSYYDYYQPEAYVP+ D YIEK+S INE+ID+
Sbjct: 61  IISHNKTLAAQLYSEMKEFLPENSVEYFVSYYDYYQPEAYVPQKDMYIEKDSDINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+ATR+L ER D ++V+SVSCIYG+G  E Y   ++ LK G S  +  +L  LV  QY
Sbjct: 121 LRHAATRALFERRDVVIVASVSCIYGLGEPEEYRSFVLPLKKGQSFRRDLILRRLVDMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RG FR+ GD++EI P++ E++A RV  FG++IE I    P++G+ + ++E I
Sbjct: 181 ERNDLDFSRGKFRLRGDTLEIQPAY-EELALRVEFFGDEIERIVSLDPVSGELLADIEEI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VT    +  A+K I+ EL+ RL ELE EG++LEA RL+QR  YDLEM+E  G
Sbjct: 240 NIYPAKHFVTSAEKMAEAIKSIQAELEDRLKELEAEGKMLEAARLKQRTNYDLEMMEQAG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  G  P TL +Y PED LL VDESH+++PQI GMY GD  RK TL
Sbjct: 300 YCSGVENYSRHLAGRKAGSAPWTLLDYFPEDFLLIVDESHMSLPQIRGMYAGDSARKKTL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS MDNRPL F+E+       I VSATPG +E E     +VEQ++RPTGL++P
Sbjct: 360 VDYGFRLPSAMDNRPLSFDEFKARVKQAIYVSATPGPYEKEHSLQ-VVEQLVRPTGLLEP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++    Q++D+ +E+     +  R+L+T LTK+M+E L +YL E  ++  Y+HSEV 
Sbjct: 419 VMTVKPTVGQIDDLLEEVKKRVAKNERVLITTLTKKMSEKLADYLVEMGVKTHYLHSEVD 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS+ +LIQT+GR
Sbjct: 479 TLERIEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V+ +VI+YAD IT S+Q A+DE  RRR+ Q ++N+ HNI PQ +++ I ++ + I 
Sbjct: 539 AARHVDGQVIMYADKITGSMQRAMDEIIRRRKIQEDYNRLHNITPQGIRKAIKDINERIR 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
              A  +            ++     +K L  QM  AA NL FE AA IRD +  L+++ 
Sbjct: 599 SVTAEVSGPEFRPTPTL--REDIARLIKELESQMKKAAKNLEFERAALIRDRVVELRAAL 656

Query: 798 YFQ 800
              
Sbjct: 657 EID 659


>gi|309390141|gb|ADO78021.1| Excinuclease ABC subunit B [Halanaerobium praevalens DSM 2228]
          Length = 673

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/669 (53%), Positives = 477/669 (71%), Gaps = 14/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P GDQP AI +L +GI +  + Q LLG TG+GKTFTMAK++E + +P +V+A
Sbjct: 6   FKLKAPFEPKGDQPEAIEKLAQGIKNGYQHQTLLGATGTGKTFTMAKLVEEVNKPTLVIA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK++S+N++I+++R 
Sbjct: 66  HNKTLAAQLTSEFKEFFPDNAVEYFVSYYDYYQPEAYVPQTDTYIEKDASVNDEIEKLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D ++V+SVSCIYG+GS + Y  + + LK+G  +++K++  SL   QY R 
Sbjct: 126 SATTSLFERRDVLIVASVSCIYGLGSPDDYLNLSLDLKVGKIMDRKKITRSLTFMQYSRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD ++IFP++  D+A RV +FG++I+ I+    +TG+    +E + IY
Sbjct: 186 DMDTSRGHFRVKGDVVDIFPAYR-DIAIRVELFGDEIDRITRINTVTGEVQAEIEEMTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VTP   +  A+K I  EL+  L +L  E RL+EAQRLEQR  YDLEMLE  G C 
Sbjct: 245 PASHFVTPEDKVERAIKTITAELEEHLKDLRAENRLVEAQRLEQRTRYDLEMLEQMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L GR  G  P  L +Y P+D ++ +DESH+TIPQI GM+ GD  RK  L EY
Sbjct: 305 GIENYARHLAGRETGSRPMALLDYFPDDFMVIIDESHMTIPQIGGMFAGDRSRKEKLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+  + P  + VSATPG +E +  Q  IVEQIIRPTGLVDP ++
Sbjct: 365 GFRLPSALDNRPLNFEEFEQVVPQAVYVSATPGPYERKHSQQ-IVEQIIRPTGLVDPEID 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  ++Q++D+ +EI        R+L+T LTK+M+EDLTEYL E  I+VRY+HS++ T+E
Sbjct: 424 IRPTKSQIDDLLEEIRQVVASKERVLVTTLTKKMSEDLTEYLAEAGIKVRYLHSDIDTIE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLGKFDVLVGINLLREGLD+PE   VAILDADKEGFLRS+ +LIQTIGRAAR
Sbjct: 484 RSEIIRDLRLGKFDVLVGINLLREGLDLPEVSRVAILDADKEGFLRSQRALIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  KVI+YAD IT S+Q AI ET RRR+ Q++HN  +NI P+++ + + +V+ P+ +  
Sbjct: 544 NVEGKVIMYADKITDSMQTAISETERRRKIQIQHNLDNNITPETIIKPVRDVVKPVDMVV 603

Query: 741 AATTNISIDAQQ------------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +   +   D  Q              +++K+ +  +  L ++M  AADNL FE AA+IRD
Sbjct: 604 SEDQSRYYDKSQSNTDPDDHSQNYDQMNRKEIQHLILDLEEEMETAADNLEFEIAAQIRD 663

Query: 789 EIKRLKSSP 797
           EI+ L++  
Sbjct: 664 EIEELEAKL 672


>gi|189462714|ref|ZP_03011499.1| hypothetical protein BACCOP_03411 [Bacteroides coprocola DSM 17136]
 gi|189430583|gb|EDU99567.1| hypothetical protein BACCOP_03411 [Bacteroides coprocola DSM 17136]
          Length = 674

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/666 (50%), Positives = 461/666 (69%), Gaps = 13/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AIAQL +G+ S    Q LLGVTGSGKTFT+A VI+ + +P ++++
Sbjct: 3   FELVSDYQPTGDQPEAIAQLTEGVKSGVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFKNFFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYGEFKNFFPHNAVEYYVSYYDYYQPEAYLPSTDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  RND IV+SSVSCIYG+G+   +   ++++K G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRNDVIVISSVSCIYGMGNPADFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++ + +  RV  + ++I+ I E  P++G +  + +  KI
Sbjct: 183 NDIELNRGNFRVKGDTVDISLAYTDHL-LRVIFWDDEIDAIEEIDPVSGHRTGSFDEYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T + +   A+  I+++L  ++   E++G+  EA+RL +R+TYD+EML   G C
Sbjct: 242 YPANLFMTTKESTLKAIHQIEDDLTKQVAFFEEQGKPYEAKRLYERVTYDMEMLRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PG  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGREPGSRPYCLLDFFPKDFLIVIDESHVSVPQIRAMYGGDRARKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFQEMAKQVIYVSATPADYELIQSEGVVVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  QV+D+ +EI    +   R+L+T LTKRMAE+LTEYL   NIR  Y+HSEV TL
Sbjct: 422 EVRPSLNQVDDLMEEIQQRIELKERVLVTTLTKRMAEELTEYLLRHNIRCTYIHSEVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVQIMEDLRQGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--- 736
           RNVN KVI+YAD IT S++  IDET RRREKQL +N+ H I PQ +K+     +      
Sbjct: 542 RNVNGKVIMYADKITDSMKQTIDETNRRREKQLAYNEAHGITPQQIKKNRNNALLETTGE 601

Query: 737 --------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                    +E+      + D     +SK++ +  ++  RK M  AA  LNF EAA+ RD
Sbjct: 602 TSSKQPKAYVENTEHIQAAADPIVQYMSKEQLQKSMERTRKLMQEAAKKLNFIEAAQYRD 661

Query: 789 EIKRLK 794
           E+ RL+
Sbjct: 662 ELLRLE 667


>gi|326773410|ref|ZP_08232693.1| excinuclease ABC subunit B [Actinomyces viscosus C505]
 gi|326636640|gb|EGE37543.1| excinuclease ABC subunit B [Actinomyces viscosus C505]
          Length = 698

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/692 (50%), Positives = 479/692 (69%), Gaps = 25/692 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             +    +    F++ + Y PSGDQP AIA+L + + + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVTELQRAAKPFEVISPYSPSGDQPTAIAELTERLRAGEKDIVLLGATGTGKSATTAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           +E +QRP +++ PNK LAAQ+ +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+
Sbjct: 62  VEQVQRPTLILEPNKTLAAQMAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN++++R+RHSAT SLL R D +VVSSVSCIYG+G+ + Y   +  L++G  +++ +L
Sbjct: 122 SSINDEVERLRHSATNSLLTRRDVVVVSSVSCIYGLGTPQEYVDRMTPLEVGQQIDRDDL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R DI   RGTFRV GD++EI P + E++A R+  FG++IE ++  +P+TG
Sbjct: 182 LRRFVSMQYTRNDIDFTRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIEALATLHPVTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             I  VE + ++  SHYV     +  A++ I+ EL  RL +LE +GRLLEAQRL  R TY
Sbjct: 241 DVIDTVEQVFVFPASHYVAGPERMQKAIEGIEAELAERLAQLEHDGRLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C  IENYS ++ GR  G PP TL +Y PED LL +DESHVT+PQI  M+ 
Sbjct: 301 DLEMLQQIGMCSGIENYSLHIDGRETGTPPNTLLDYFPEDFLLVIDESHVTVPQIGAMHE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS +DNRPL F E+      T+ +SATPG +E ++  G +VEQI
Sbjct: 361 GDASRKRTLVEHGFRLPSALDNRPLTFAEFEDRIGQTVYLSATPGDYETQRSDG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++  + Q++D+ +E+    ++  RIL+T LTKRMAEDLT YL ER +R
Sbjct: 420 IRPTGLVDPKVVVKPTQGQIDDLLEEVRARVERQERILVTTLTKRMAEDLTTYLAERGVR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y+HS+V TL R+E++R+LRLG+FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS 
Sbjct: 480 VEYLHSDVDTLRRVELLRELRLGRFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRST 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SL+QTIGRAARNV+ +V +YADTIT ++  AI+ET RRR KQL +N +H I+PQ +++K
Sbjct: 540 RSLVQTIGRAARNVSGEVHMYADTITPAMAEAIEETERRRTKQLAYNAEHGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI-----------------------SIDAQQLSLSKKKGKAHLK 765
           I +V D +  ED  T ++                       ++  +    ++      + 
Sbjct: 600 IADVTDMLAREDVDTADLLAGGYRGHEDSSVRARRKHAAEATVREKLAGAAQGDLAELIN 659

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            L +QMH AA++L+FE AAR+RDEI+ LK   
Sbjct: 660 ELTQQMHAAAEDLHFELAARLRDEIQDLKKEL 691


>gi|33864613|ref|NP_896172.1| excinuclease ABC subunit B [Synechococcus sp. WH 8102]
 gi|81835180|sp|Q7UA24|UVRB_SYNPX RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|33632136|emb|CAE06592.1| excinuclease ABC subunit B [Synechococcus sp. WH 8102]
          Length = 677

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/676 (51%), Positives = 458/676 (67%), Gaps = 17/676 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  + +   Y P GDQP AI QL++G++  E+ Q LLG TG+GKTFTMA VI    RPA+
Sbjct: 1   MPAYDLTAPYTPKGDQPTAIKQLVQGVNGGERYQTLLGATGTGKTFTMANVIAQTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPENAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G+++  +  L  LV  QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGETLNIRSQLRELVNNQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D  I RG FR+ GD +EI P++ ED   R+ +FG+++E I    P TG+ ++++ET+
Sbjct: 181 SRNDTEIARGRFRMKGDVLEIGPAY-EDRLVRIELFGDEVEAIRYVDPTTGEILQSLETV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP+  L++A+  I++EL+ RL  L  EG+LLEAQRLEQR  YDLEML   G
Sbjct: 240 NIYPAKHFVTPKDRLDSAIGEIRQELRDRLDFLNGEGKLLEAQRLEQRTKYDLEMLGQVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLAGREEGTPPECLIDYFPKDWLLIVDESHVTCSQLQAMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+ EE+      T+ VSATPG+WELE   G + +Q+IRPTG++DP
Sbjct: 360 IEHGFRLPSAADNRPLKGEEFWEKAHQTVFVSATPGNWELEVSGGEVAQQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    QV+D+  EI   A +  R+L+T LTKRMAEDLT+YL E  +RVRY+HSE+ 
Sbjct: 420 IVEVRPTTGQVDDLLGEIRDRASKQQRVLVTTLTKRMAEDLTDYLAENEVRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V    +LYAD +T+S+  AI ET RRR+ Q  +N+KH I P +  +K    I   L
Sbjct: 540 AARHVEGVALLYADNMTESMAKAISETERRRKIQQTYNEKHGIVPTAAGKKASNSILSFL 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKA----------------HLKSLRKQMHLAADNLNFE 781
                      DA  + ++ K  +A                 +  L  +M  AA  L+FE
Sbjct: 600 ELSRKLKQDGPDADLVQVAGKAAQALEEDPDAGLALEALPELIDQLEGKMKEAAKKLDFE 659

Query: 782 EAARIRDEIKRLKSSP 797
           +AA +RD IK+L+   
Sbjct: 660 DAANLRDRIKQLRQKM 675


>gi|50954810|ref|YP_062098.1| excinuclease ABC subunit B [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71658761|sp|Q6AF52|UVRB_LEIXX RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|50951292|gb|AAT88993.1| excinuclease ABC subunit B [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 688

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/676 (50%), Positives = 475/676 (70%), Gaps = 16/676 (2%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
             ++ +  F++ ++Y PSGDQP AIA+L   I + E   +LLG TG+GK+ T A ++EA+
Sbjct: 2   EPTRLVRPFEVVSEYQPSGDQPKAIAELAGRITAGETDVVLLGATGTGKSATTAWLVEAV 61

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +V+A NK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+SSIN
Sbjct: 62  QRPTLVLAHNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSIN 121

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
            +++R+RHS T SLL R D +VVS+VSCIYG+G+ E Y + +V L++G +V + +L+   
Sbjct: 122 AEVERLRHSTTNSLLSRRDVVVVSTVSCIYGLGAAEEYLEAMVALQVGQNVGRDQLIRRF 181

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QY+R DI   RG FRV GD+IEI P + E+ A R+ +FG++IE +   +PLTG+ + 
Sbjct: 182 VAMQYERNDIDFSRGKFRVRGDTIEIIPVY-EEHALRIELFGDEIEALYSLHPLTGEVLA 240

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
             + + ++  +HY     T+  A+  I+ EL  RL+ELE+EG+LLEAQRL  R  +D+EM
Sbjct: 241 RTDAVSVFPATHYAASPATIQRAIGTIQTELHDRLVELEREGKLLEAQRLRMRTQFDIEM 300

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           +E  G C  IENYSR++ GR PGE P  L +Y P+D L+ +DESHVT+PQI  MY GD  
Sbjct: 301 MEQIGFCSGIENYSRHIDGRAPGEAPHCLLDYFPDDFLVVIDESHVTVPQIGAMYEGDAS 360

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS MDNRPLR+ E+      T+ +SATPG +EL    G +VEQIIRPT
Sbjct: 361 RKRTLVEHGFRLPSAMDNRPLRWNEFKERVGQTVYLSATPGQYELGIADG-VVEQIIRPT 419

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP + ++  + Q++D+ +EI   A++  R+L+T LTK+MAE+LT++L E  ++VRY+
Sbjct: 420 GLVDPQILVKPTKGQIDDLLEEIRARAERDERVLVTTLTKKMAEELTDFLAEAGVKVRYL 479

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H++V TL R+E++ +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLI
Sbjct: 480 HADVDTLRRVELLTELRSGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLI 539

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+ +V +YAD +T S++ AI+ET+RR E Q+E+N+ + I+PQ ++++I ++
Sbjct: 540 QTIGRAARNVSGEVHMYADVLTDSMKKAIEETSRRSELQVEYNRANGIDPQPLRKRIADI 599

Query: 733 IDPILLEDAATTNISIDAQQLSLSK--------------KKGKAHLKSLRKQMHLAADNL 778
            D +  E+A T  I     Q   S                + ++ +  L  QM  AA  L
Sbjct: 600 TDILAREEADTAKILAGRDQKRKSPTPSLRSGGIAAQGAAELESLIADLNAQMLAAAGEL 659

Query: 779 NFEEAARIRDEIKRLK 794
            FE AAR+RDE+  LK
Sbjct: 660 KFELAARLRDELSDLK 675


>gi|260434319|ref|ZP_05788289.1| excinuclease ABC, B subunit [Synechococcus sp. WH 8109]
 gi|260412193|gb|EEX05489.1| excinuclease ABC, B subunit [Synechococcus sp. WH 8109]
          Length = 679

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/676 (50%), Positives = 450/676 (66%), Gaps = 17/676 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  + +   Y P GDQP AI QL+ G++S E+ Q LLG TG+GKTFTMA VI    RPA+
Sbjct: 1   MPAYDLTAPYSPKGDQPTAIKQLVAGVNSGERYQTLLGATGTGKTFTMANVIAQTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPENAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G+++  +  L  LV  QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGETLNIRSQLRELVNNQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D  I RG FR+ GD +EI P++ ED   RV +FG+++E I    P TG+ +++++ +
Sbjct: 181 SRNDTEIARGRFRMKGDVLEIGPAY-EDRLVRVELFGDEVEAIRYVDPTTGEILQSMDAV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP+  L++A+  I+ EL+ RL  L  EG+LLEAQRLEQR  YDLEML   G
Sbjct: 240 NIYPAKHFVTPKDRLDSAISAIRSELRERLDVLNGEGKLLEAQRLEQRTKYDLEMLGQVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLAGREEGTPPECLIDYFPDDWLLIVDESHVTCSQLQAMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS  DNRPL+  E+      T+ VSATPG+WE+E   G + EQ+IRPTG++DP
Sbjct: 360 IEHGFRLPSAADNRPLKGAEFWDKARQTVFVSATPGNWEMEVSGGEVAEQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    QV+D+  EI   + +  R+L+T LTKRMAEDLT+YL E  +RVRY+HSE+ 
Sbjct: 420 VVEVRPTTGQVDDLLGEIRNRSAKNQRVLVTTLTKRMAEDLTDYLAENEVRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V    +LYAD +T S+  AI ET RRR  Q  +N+K+ + P +  +K    I   L
Sbjct: 540 AARHVEGMALLYADNMTDSMAKAISETERRRAIQQAYNEKNGVVPTAAGKKASNSILSFL 599

Query: 738 LEDAATTNISIDAQ----------------QLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
                      DA                    L+ +     +  L  +M  AA  L+FE
Sbjct: 600 ELSRKLKQDGPDADLVEVVGKAAKALEDDPDAGLALEALPELIDQLEAKMKQAAKKLDFE 659

Query: 782 EAARIRDEIKRLKSSP 797
           EAA +RD +K+L+   
Sbjct: 660 EAANLRDRVKQLRQKM 675


>gi|305664821|ref|YP_003861108.1| excinuclease ABC subunit B [Maribacter sp. HTCC2170]
 gi|88707943|gb|EAR00182.1| excinuclease ABC subunit B [Maribacter sp. HTCC2170]
          Length = 663

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/660 (51%), Positives = 460/660 (69%), Gaps = 5/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI QL +GI+S+E  Q LLGVTGSGKTF++A VIE +QRP +V+A
Sbjct: 3   FKVVSEFKPTGDQPEAIRQLEEGINSQEPYQTLLGVTGSGKTFSVANVIEKVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P +  YIEK+ SINE I+++R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPNNAVEYFVSYYDYYQPEAYIPTSGLYIEKDLSINEDIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT SLL  R D +VV+SVSC+YGIG+   + + ++ +     + + +LL  LV+  Y R
Sbjct: 123 SATSSLLSGRRDVLVVASVSCLYGIGNPVEFQKNVISIFKNQVIARTKLLHMLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                  G FRV GD +++FPS+  D A+R+  FG++IEEI  F P     I   E + I
Sbjct: 183 TTADFRNGNFRVKGDVVDVFPSYA-DHAFRIHFFGDEIEEIEAFDPFNNNVIEVYENLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+ YI+++L  ++   ++ G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDILQNAIHYIQDDLVHQIDYFKEIGKPLEAKRLEERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ +DESHVTIPQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVIDESHVTIPQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL+ CQG+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQLCQGVYVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI    ++  R L+T LTKRMAE+LT+YL   N+R RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLVEEIQQRVEKDERTLVTTLTKRMAEELTKYLSRINVRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGIFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           R++N K I+YAD IT S+Q  IDET  RREKQ+ +N  +N+ P+++ + +  V+    + 
Sbjct: 542 RHLNGKAIMYADKITASMQKTIDETNYRREKQIAYNTANNVTPKALNKSLDSVLAKNSVS 601

Query: 740 D---AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                     + +     L+K++ +  ++  RK M  AA  L+F +AA++RDEIK L++ 
Sbjct: 602 TYHFEKEELRAAEPDMDYLTKEQIEKMIRDKRKAMEKAAKELDFMQAAKLRDEIKMLQNQ 661


>gi|325068718|ref|ZP_08127391.1| excinuclease ABC subunit B [Actinomyces oris K20]
          Length = 698

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/692 (50%), Positives = 479/692 (69%), Gaps = 25/692 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             +    +    F++ + Y PSGDQP AIA+L + + + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVTELQRAAKPFEVISPYSPSGDQPTAIAELTERLRAGEKDIVLLGATGTGKSATTAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           +E +QRP +++ PNK LAAQ+ +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+
Sbjct: 62  VEQVQRPTLILEPNKTLAAQMAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN++++R+RHSAT SLL R D +VVSSVSCIYG+G+ + Y   +  L++G  +++ +L
Sbjct: 122 SSINDEVERLRHSATNSLLTRRDVVVVSSVSCIYGLGTPQEYVDRMTPLEVGQQIDRDDL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R DI   RGTFRV GD++EI P + E++A R+  FG++IE ++  +P+TG
Sbjct: 182 LRRFVTMQYTRNDIDFTRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIEALATLHPVTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             I  VE + ++  SHYV     +  A++ I+ EL  RL +LE +GRLLEAQRL  R TY
Sbjct: 241 DVIDTVEQVFVFPASHYVAGPERMQKAIEGIEAELAERLAQLEHDGRLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C  IENYS ++ GR  G PP TL +Y PED LL +DESHVT+PQI  M+ 
Sbjct: 301 DLEMLQQIGMCSGIENYSLHIDGRETGTPPNTLLDYFPEDFLLVIDESHVTVPQIGAMHE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL E+GFRLPS +DNRPL F E+      T+ +SATPG +E ++  G +VEQI
Sbjct: 361 GDASRKRTLVEHGFRLPSALDNRPLTFAEFEDRVGQTVYLSATPGDYETQRSDG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++  + Q++D+ +E+    ++  RIL+T LTKRMAEDLT YL ER +R
Sbjct: 420 IRPTGLVDPKVVVKPTQGQIDDLLEEVRTRVERQERILVTTLTKRMAEDLTTYLAERGVR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y+HS+V TL R+E++R+LRLG+FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS 
Sbjct: 480 VEYLHSDVDTLRRVELLRELRLGRFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRST 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SL+QTIGRAARNV+ +V +YADTIT ++  AI+ET RRR KQL +N +H I+PQ +++K
Sbjct: 540 RSLVQTIGRAARNVSGEVHMYADTITPAMAEAIEETERRRTKQLAYNAEHGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI-----------------------SIDAQQLSLSKKKGKAHLK 765
           I +V D +  ED  T ++                       ++  +    ++      + 
Sbjct: 600 IADVTDMLAREDVDTADLLAGGYRGHEDSSVRARRKHAAEATVREKLAGAAQGDLAELIN 659

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            L +QMH AA++L+FE AAR+RDEI+ LK   
Sbjct: 660 ELTQQMHAAAEDLHFELAARLRDEIQDLKKEL 691


>gi|293375597|ref|ZP_06621871.1| excinuclease ABC, B subunit [Turicibacter sanguinis PC909]
 gi|325836778|ref|ZP_08166245.1| excinuclease ABC, B subunit [Turicibacter sp. HGF1]
 gi|292645814|gb|EFF63850.1| excinuclease ABC, B subunit [Turicibacter sanguinis PC909]
 gi|325491156|gb|EGC93445.1| excinuclease ABC, B subunit [Turicibacter sp. HGF1]
          Length = 657

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/654 (52%), Positives = 456/654 (69%), Gaps = 7/654 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL++ I    K Q+LLG TG+GKTFT+A V++A+ +P +V+A
Sbjct: 6   FEIVSKYSPSGDQPKAIKQLVENIEHGVKEQVLLGATGTGKTFTIANVVQAVNKPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSE K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++  N++ID++RH
Sbjct: 66  HNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAKTNDEIDKLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYGIG  E Y  M+V +++G  +E+ +LL  LV+ QY+R 
Sbjct: 126 SATAALLERNDVIVVASVSCIYGIGDPEEYKSMMVSIRVGMEMERNDLLKELVRIQYQRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD +EI P   E  A R+  FG +++ I E   LTG+ +   + + I+
Sbjct: 186 DIDFHRGTFRVRGDIVEILPIATEKNAIRIEFFGEEVDRIREIDTLTGEVLSERKHVVIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    +  A+K I+EEL+ ++   + E +L+EAQR+EQR  YDLEM+   G C 
Sbjct: 246 PASHFVTGEERMKIALKNIEEELEQQIEYFKSEEKLIEAQRIEQRTRYDLEMMAEMGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS  L+ R  G  P  L ++ P+D LL  DESHVT+PQ+ GMY GD  RK TL  +
Sbjct: 306 GVENYSGPLSLRERGATPYCLLDFFPDDWLLVADESHVTLPQVRGMYNGDRARKETLVNH 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+       I VSATPG +EL +    +VEQIIRPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLQFNEFEEKIHQAIYVSATPGDYELART-DKVVEQIIRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +  +R Q++ +  EI    ++  R+L+T LT +M+E+LT YL E  I+V Y+HSE+KTLE
Sbjct: 425 LHPSRGQIDHLVGEIYKRIEKNERVLVTTLTIKMSEELTNYLKELGIKVAYLHSEIKTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIRDLR+G +DVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 485 RIEIIRDLRVGTYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSDRSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VILYAD +T S+Q AI+ET+RRRE Q   N++H I P ++++ + +VI    + +
Sbjct: 545 NADGRVILYADKMTGSMQRAIEETSRRREIQENFNEEHGIIPMTIRKDVRDVIRATEVVE 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                         +S+K  +  +  L K+M  AA  L+FE AA +RD +  LK
Sbjct: 605 KEAKY------DKKMSRKDKEKLMAKLEKEMKEAAKALDFETAATLRDAMLELK 652


>gi|302871765|ref|YP_003840401.1| excinuclease ABC, B subunit [Caldicellulosiruptor obsidiansis OB47]
 gi|302574624|gb|ADL42415.1| excinuclease ABC, B subunit [Caldicellulosiruptor obsidiansis OB47]
          Length = 662

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/661 (55%), Positives = 484/661 (73%), Gaps = 4/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +D+ P+GDQP AI  L +GI   EK Q LLGVTGSGKTFTMAKVIE +QRP +
Sbjct: 1   MKKFRLVSDFRPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF+ FFP NAVE+FVSYYDYYQPEAY+P TDTYIEK+SSINE+ID+
Sbjct: 61  VLAHNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIY +GS E Y  + + L+ G + ++ E++  L++ QY
Sbjct: 121 LRHSATSALFERRDVIIVASVSCIYSLGSPEDYLNLTISLRPGMTKDRDEVIRELIRMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RG FRV GD +E+FP+   D A R+  FG++IE I+EF  +TG+ I     +
Sbjct: 181 ERNDVDFRRGRFRVRGDVLEVFPASNTDRAIRIEFFGDEIERITEFDVVTGEIIGRRNHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SHYVT    L  A+K I+EEL+ RL EL   G+L+EAQRLEQR  YD+EML+  G
Sbjct: 241 AIFPASHYVTTAEKLKRAIKSIEEELEQRLNELRSMGKLVEAQRLEQRTRYDIEMLQEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSR+LTGR PG PP TL +Y P+D ++FVDESHVTIPQ+  MY GD  RK  L
Sbjct: 301 FCKGIENYSRHLTGRPPGSPPYTLLDYFPKDFIMFVDESHVTIPQVRAMYNGDKARKDAL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPL FEE+       I VSATPG +EL++    IVEQIIRPTGLVDP
Sbjct: 361 VEYGFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYELKKS-SRIVEQIIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+   + Q++ +  EI    ++  R+L+T LTK+MAE LT+YL +  IRVRYMHS++ 
Sbjct: 420 EIEVHPVQGQIDHLIGEIRKRVEKNQRVLVTTLTKKMAESLTDYLKDVGIRVRYMHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++IIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ KVI+YAD IT ++Q AIDET RRR+ Q+E+N+K+ I PQ+V++ I ++I+  +
Sbjct: 540 AARNVDGKVIMYADRITNAMQRAIDETNRRRKIQIEYNQKYGIVPQTVRKGIRQIIEATV 599

Query: 738 LEDAATTNISIDAQQL---SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                        ++    +++K++ + ++K L ++M   A  L FE+AA++RD+I  LK
Sbjct: 600 SVAEEEEEKYEVVEKDIIKNMTKEEIEEYIKELEQEMKKFAIELEFEKAAKVRDKIFELK 659

Query: 795 S 795
            
Sbjct: 660 K 660


>gi|260062196|ref|YP_003195276.1| excinuclease ABC subunit B [Robiginitalea biformata HTCC2501]
 gi|88783758|gb|EAR14929.1| excinuclease ABC subunit B [Robiginitalea biformata HTCC2501]
          Length = 662

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/661 (50%), Positives = 458/661 (69%), Gaps = 5/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQPAAIAQL  GI   ++ Q LLGVTGSGKTFT+A V+E +QRP +V+A
Sbjct: 3   FKVVSEFQPTGDQPAAIAQLSGGIREGDRYQTLLGVTGSGKTFTVANVVEQVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P +  YIEK+ SINE I+++R 
Sbjct: 63  HNKTLAAQLYSEFKMFFPENAVEYFVSYYDYYQPEAYIPTSGLYIEKDLSINEDIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D +VV+SVSC+YGIG+   + + ++ L+    + +  L+  LV+  Y R
Sbjct: 123 STTSSLLSGRRDVLVVASVSCLYGIGNPIEFQKNVIHLERDQVLARTRLMHQLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                  G FRV GD +++FP +  D A+R+  FG++IE I  F P   + I   ET+ I
Sbjct: 183 TTADFRNGNFRVRGDVLDVFPGYA-DHAFRIHFFGDEIEAIEAFDPYNNKVIEEYETLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+++L  ++   ++ G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLQEAIHKIQDDLTAQVAYFKEIGKPLEAKRLEERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ VDESHVTIPQ+  MY GD  RK  L  
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVVDESHVTIPQVHAMYGGDRSRKENLVN 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +E++Q  G+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYEMQQSGGVYVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  Q+  R L+T LTKRMAE+LT+YL   ++R RY+HS+V TL
Sbjct: 422 EVRPSENQIDDLVEEIQLRVQRDERTLVTTLTKRMAEELTKYLTRIDVRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVLVG+NLLREGLD+PE  LVAI+DADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGIFDVLVGVNLLREGLDLPEVSLVAIIDADKEGFLRSNRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           R++  K I+YADT+T S+Q  IDET  RR+KQL++NK+H I P+++K+ +  V+    + 
Sbjct: 542 RHLQGKAIMYADTVTDSMQKTIDETNYRRQKQLDYNKEHGITPRALKKNLDSVLARNSVS 601

Query: 740 D---AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                     + +     L+K++ +  ++  RK M  AA +L+F +AA++RDEIK L+  
Sbjct: 602 TFHFEKKERDAREPDPAYLTKEQKEELIRKKRKDMERAAKDLDFMQAAKLRDEIKVLQEK 661

Query: 797 P 797
            
Sbjct: 662 A 662


>gi|315023810|gb|EFT36812.1| excinuclease ABC subunit B [Riemerella anatipestifer RA-YM]
          Length = 666

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/665 (50%), Positives = 467/665 (70%), Gaps = 9/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L+ GI   +  Q LLGVTGSGKTFT+A V+  +QRP IV+A
Sbjct: 3   FKLHSEFKPTGDQPQAIDKLVSGIEQGQPYQTLLGVTGSGKTFTIANVVNTVQRPTIVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEAY+  T TYIEK+ SINE+++++R 
Sbjct: 63  HNKTLAAQLFMEFKEFFPENAVEYFVSYYDYYQPEAYIASTGTYIEKDLSINEEVEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT SLL  R D ++V+SVSCIYGIG+   +++ +++L++   + + +LL  LV   Y R
Sbjct: 123 SATTSLLSGRRDVLIVASVSCIYGIGNPTEFNKSLIELELQSKISRTDLLHKLVNALYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                +RG+FRV GD I+IFP++ ++ A R+  FGN+I++I  F P++G  + + + I I
Sbjct: 183 AVNEFVRGSFRVKGDVIDIFPAYADN-AIRIRFFGNEIDKIQSFDPISGSIMGDFDKINI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT + T+N+A++ I+++L  ++    + G+ LEA+RL++R   DLEM++  G C
Sbjct: 242 YPANLFVTSKETMNSAIREIQDDLVKQVDFFNEIGKNLEAKRLKERTELDLEMIKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY+ GRNPG  P  L +Y P D L+ +DESHVTIPQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYMDGRNPGSRPFCLLDYFPNDYLMVIDESHVTIPQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  ++   I VSATP  +ELE+ QG  VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFESMQNQVIYVSATPADYELEKTQGEYVEQIIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+ +EI   A++  R+L+T LTK+MAE+LT+Y  +  IR RY+HS+V TL
Sbjct: 422 EVRPTLNQIDDLMEEIQKRAEEDERVLVTTLTKKMAEELTKYFTKFGIRTRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERI+I++DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEG LRS+ S+IQT+GRAA
Sbjct: 482 ERIQIMQDLRAGLFDVLVGVNLLREGLDLPEVSLVAILDADKEGMLRSRRSMIQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N K I+YAD +TKS+Q  IDET  RREKQ+ +N+ + + PQ + +KI +V+     +
Sbjct: 542 RNINGKAIMYADKMTKSMQATIDETNYRREKQMSYNEANGLIPQPLNKKISDVLVGHTPD 601

Query: 740 -------DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                           + +    + +  +  +   +KQM  AA  L+F  AA++RDEIK 
Sbjct: 602 FPKQEYIQKEIVKQVAETKVSYGNAEDLEKIIAEKQKQMEAAAKQLDFILAAKLRDEIKA 661

Query: 793 LKSSP 797
           LK +P
Sbjct: 662 LKGTP 666


>gi|88802767|ref|ZP_01118294.1| excinuclease ABC subunit B [Polaribacter irgensii 23-P]
 gi|88781625|gb|EAR12803.1| excinuclease ABC subunit B [Polaribacter irgensii 23-P]
          Length = 662

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/661 (50%), Positives = 464/661 (70%), Gaps = 5/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L  GI++ EK Q LLGVTGSGKTFT+A VI+ +++P +V+A
Sbjct: 3   FKLVSEFSPTGDQPQAIQELSDGINTGEKFQTLLGVTGSGKTFTVANVIQEVRKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P T TYIEK+ SINE I+R+R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPVTGTYIEKDLSINEDIERLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D +V++SVSC+YGIG+   + + ++ +++G  + + + L  LV+  Y R
Sbjct: 123 STTSSLLSGRRDVLVIASVSCLYGIGNPTEFKKNVIPVQVGQLISRTKFLHQLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +  I  GTF+V GD + I+PS+ ++  +R+  FG+++EEI  F   +   I   E + I
Sbjct: 183 TEHEIKSGTFKVKGDVVTIYPSYGDN-GYRIHFFGDEVEEIELFDLESNAIINTFEELSI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+ +I+E++  ++   E+ GR LEA+R+++R  +DLEM+   G C
Sbjct: 242 YPANLFVTSPDVLQNAIHHIQEDMVKQVAYFEEIGRSLEAKRIKERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR+PG  P  L +Y P+D L+ +DESHVT+PQ   MY GD  RK  L +
Sbjct: 302 SGIENYSRYLDGRDPGTRPFCLLDYFPDDYLMIIDESHVTVPQTHAMYGGDRSRKENLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  ++  TI VSATP  +EL++ +G+ VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEAIQNQTIFVSATPADYELQKTEGVFVEQIIRPTGLLDPMI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LT+YL   NIR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLIEEIQIRIEKDERTLVTTLTKRMAEELTKYLTRVNIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR+  SL QTIGRAA
Sbjct: 482 ERVEILQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRNVKSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN   ILYAD +TKS+Q  IDET RRREKQ+ +N  +N+ P  +K+KI + +    + 
Sbjct: 542 RNVNGLAILYADKMTKSMQKTIDETDRRREKQIAYNTANNMVPTQIKKKIDDTLTKTAVS 601

Query: 740 DA---ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                    ++ +     L K++ +  ++  RKQM  AA  L+F  AA++RDEI  LK S
Sbjct: 602 SYHYDNAKQVAAEQDLQYLPKEEIEKRIRDKRKQMEAAAKELDFVVAAKLRDEIALLKES 661

Query: 797 P 797
            
Sbjct: 662 V 662


>gi|292669610|ref|ZP_06603036.1| excision endonuclease subunit UvrB [Selenomonas noxia ATCC 43541]
 gi|292648819|gb|EFF66791.1| excision endonuclease subunit UvrB [Selenomonas noxia ATCC 43541]
          Length = 681

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/660 (52%), Positives = 457/660 (69%), Gaps = 3/660 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++   + P GDQP AIA L  GI +    Q+LLG TG+GKT+TMAKVIE +QRP +V+
Sbjct: 17  PFKVAAPFEPMGDQPQAIADLAGGIENGMTAQVLLGATGTGKTYTMAKVIERVQRPTLVI 76

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQL SEFK+FFP N V YFVSYYDYYQPEAY+ +TDTYIEK++SIN++ID +R
Sbjct: 77  AHNKTLAAQLASEFKSFFPDNYVGYFVSYYDYYQPEAYIAQTDTYIEKDASINDEIDELR 136

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT SL ER D I+V+SVSCIYG+GS ESY +M++ +  G ++ ++E+L  LV  +Y+R
Sbjct: 137 HSATCSLFERRDVIIVASVSCIYGLGSPESYHEMVLSVHKGQTIPREEILQKLVSIRYER 196

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RG FRV GD +EI+P+   +   R+ MFG+++E I EF   +G+         +
Sbjct: 197 NDIAFERGRFRVRGDVVEIYPAGYNNRGVRIEMFGDEVERIIEFDVTSGEVYGERLHSMV 256

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SHYVT    +  AM  I+ EL  RL EL+  G+LLEAQRLEQR  YDLEM+E  G C
Sbjct: 257 FPASHYVTDDEDMKIAMADIRTELAERLDELKGAGKLLEAQRLEQRTNYDLEMMEEMGYC 316

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LT RN G+ P TL +Y PED L+ +DESHVT+PQI  MY GD  RK +L +
Sbjct: 317 SGIENYSRHLTHRNAGDTPYTLLDYFPEDFLIMIDESHVTLPQIHAMYGGDRSRKISLVD 376

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
            GFRLPS  DNRPL FEE+       + VSATPG +E++Q    + +QIIRPTGL+DP V
Sbjct: 377 NGFRLPSAFDNRPLTFEEFAARVNQIVYVSATPGKYEIQQ-AQQVTQQIIRPTGLLDPVV 435

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+  EI L  ++  R+L+T LTKRMAE LT+YL E  ++VRY+HS++ T+
Sbjct: 436 EVRPLDGQIDDLLSEIRLRIERNERVLVTTLTKRMAEHLTDYLREAGVKVRYLHSDIATI 495

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EII DLR G+FDVLVGINLLREGLD+PE  L+AILDADKEGFLRS T+LIQTIGRAA
Sbjct: 496 ERAEIIHDLRAGEFDVLVGINLLREGLDMPEVSLIAILDADKEGFLRSDTALIQTIGRAA 555

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP--IL 737
           RN    VI+Y D +T S+Q AI+ET RRR  Q E+N+ H I P+++++ I+ +I+   + 
Sbjct: 556 RNAGGHVIMYGDVVTGSMQRAIEETERRRTIQNEYNEAHGITPKTIEKPIVPLIEMTLVA 615

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            E            +  L+KK  +  +KSL ++M  A+  L FE AA +RD I  L+   
Sbjct: 616 AEGKEPYGRQDSKAKKKLAKKDRENLVKSLLREMQQASRALEFERAAELRDMIVELEGEL 675


>gi|297620436|ref|YP_003708573.1| UvrABC system protein B [Waddlia chondrophila WSU 86-1044]
 gi|297375737|gb|ADI37567.1| UvrABC system protein B [Waddlia chondrophila WSU 86-1044]
          Length = 668

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/660 (52%), Positives = 462/660 (70%), Gaps = 5/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ TDY P GDQP AI +L  GI    K Q+LLG+TGSGKTFTMA VI+ +QRP +VMA
Sbjct: 3   FKLHTDYQPRGDQPQAIEKLAAGIEEGRKSQVLLGITGSGKTFTMANVIQKVQRPTLVMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+PRTDT+IEK+ SIN++ID+MR 
Sbjct: 63  HNKTLAAQLYQEFKAFFPENAVEYFVSYYDYYQPEAYIPRTDTFIEKDMSINDRIDKMRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D ++V+SVSCIYG+GS E Y  M + +K G    + +LL  LV+ QYKR 
Sbjct: 123 SATRSLLEREDVLIVASVSCIYGLGSPEYYRGMNLHIKTGVEYRRDDLLLHLVEMQYKRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV G+ I+IFP++ ED+A R+  FG+++E ++E  PLTG+ IR ++   IY
Sbjct: 183 DYDFFRATFRVRGEIIDIFPAYEEDLALRLEFFGDELERLTEIDPLTGKMIRLIDEATIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SH+VTP      A++ IK EL+ R+   ++E +L+E QR+++R  YDLEM++  G C+
Sbjct: 243 PSSHHVTPEEIRLQAIETIKAELEERMAYFDREKKLIELQRIQERTRYDLEMIKEVGFCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+   R  G+ P  L +Y P + LL VDESH TIPQ+  M+ GD  RK +L ++
Sbjct: 303 GIENYSRHFGRREEGQAPSCLLDYFPSNYLLIVDESHQTIPQLHAMFNGDRARKQSLVDF 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPLRFEE        + VSATPG WE+++  G++VEQ+IRPTGL+DP +E
Sbjct: 363 GFRLPSAYDNRPLRFEETYSRINQVVYVSATPGEWEIKEAAGLLVEQVIRPTGLLDPIIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
            R A  QV+D  DEI     +G R+L+T LTKR+AE+LT YL + NI+ +Y+HS++ T+E
Sbjct: 423 TRPAVGQVDDALDEIRRETLKGNRVLVTTLTKRLAEELTNYLVDLNIKAKYLHSDIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II+DLRLG FDVLVGINLLREGLDIPE  LV ILDADKEGFLRS+TSLIQT GRAAR
Sbjct: 483 RVQIIQDLRLGLFDVLVGINLLREGLDIPEVSLVTILDADKEGFLRSETSLIQTCGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+Y D +TKSI   I+ T +RR  Q   N++H I P +VK +I  +  P    +
Sbjct: 543 NENGRVIMYCDKLTKSICRTIEITEKRRANQEAFNREHGITPHTVKREISSLAVPGAEAN 602

Query: 741 AA-----TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +        ++ +     L+ ++ +  +     +M  AA  + FE+AAR RD++ + + 
Sbjct: 603 VSYPMPQKELMAAEEPHPYLTLEEVRKKVAEYEGKMKKAAKEMQFEDAARYRDQLFKYQK 662


>gi|210635514|ref|ZP_03298595.1| hypothetical protein COLSTE_02534 [Collinsella stercoris DSM 13279]
 gi|210158369|gb|EEA89340.1| hypothetical protein COLSTE_02534 [Collinsella stercoris DSM 13279]
          Length = 746

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/701 (51%), Positives = 477/701 (68%), Gaps = 34/701 (4%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
            +   F++ + + PSGDQP AIA L+KG+   ++ Q+LLGVTGSGKTFTMAK IEA+ +P
Sbjct: 20  GEAAAFEVVSPFQPSGDQPEAIASLVKGVEDGDRYQVLLGVTGSGKTFTMAKTIEALGKP 79

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +VMAPNK LAAQL SE K FFPHNAV YFVSYYDYYQPEAYVP +DTYIEK+SSINE++
Sbjct: 80  TLVMAPNKTLAAQLASELKEFFPHNAVVYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEV 139

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           + +RH AT SLL R D IVV+SVSCIYGIGS E Y+ +   +     +E+ E + +L+  
Sbjct: 140 EMLRHQATASLLSRRDVIVVASVSCIYGIGSPEDYAGLAPNVDKKVPLERDEFIHALIDI 199

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R D  + RGTFRV GD ++++P + E    R   FG+++E I+E   +TG+ +R  +
Sbjct: 200 QYDRNDYDLARGTFRVRGDVVDVYPPYAE-HPLRFEFFGDEVELIAEIDEVTGEILREYD 258

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I ++  SHYVT +P +  A+K I+EEL++R+ EL+   +LLEAQRLEQR +YDLEMLET
Sbjct: 259 AIPVWPASHYVTEKPKVTAALKSIEEELEVRVGELKANDKLLEAQRLEQRTSYDLEMLET 318

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G    IENYSR+L GR PGEPP TL +Y P+D L  +DESHVT+PQI GM+ GD  RK 
Sbjct: 319 MGFTTGIENYSRHLDGRKPGEPPFTLIDYFPKDMLCIIDESHVTVPQIRGMHEGDRSRKV 378

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL E+GFRLPS +DNRPLRF+E+    P  I VSATPG +EL   Q   VEQIIRPTGL+
Sbjct: 379 TLVEHGFRLPSALDNRPLRFDEFEARIPQFIYVSATPGDYELRVSQNN-VEQIIRPTGLL 437

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +++R    Q++D+ DEIN    +  R+L+T LTKRMAEDLT++L +  IRV YMHS+
Sbjct: 438 DPKIDVRPVHGQIDDLIDEINARVAKHERVLVTTLTKRMAEDLTDHLLDAGIRVNYMHSD 497

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             T++R+EI+R LR GK DVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQTI
Sbjct: 498 TATMDRVEILRSLRQGKIDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNRRSLIQTI 557

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN   +VI+YADT+T S++ AIDET RRR  Q++ N++H I P++V++ I ++   
Sbjct: 558 GRAARNAEGEVIMYADTVTDSMREAIDETNRRRAIQMQFNEEHGIKPKTVRKAISDISSF 617

Query: 736 ILLEDA--------------------------------ATTNISIDAQQLSLSKKKGKAH 763
           I   +                                  +    +  +   L +++    
Sbjct: 618 IAEAEETVGKKDRSRGDTLGHGAFFSPAADGDAGDGGAVSMGERLAEELSELPQEELARV 677

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
           + ++   M  A++ ++FEEAAR+RD +  LK+       D+
Sbjct: 678 IATMEDDMRAASEAMDFEEAARLRDAVVSLKAMAEGTSEDE 718


>gi|195953210|ref|YP_002121500.1| excinuclease ABC subunit B [Hydrogenobaculum sp. Y04AAS1]
 gi|195932822|gb|ACG57522.1| excinuclease ABC, B subunit [Hydrogenobaculum sp. Y04AAS1]
          Length = 661

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/659 (50%), Positives = 455/659 (69%), Gaps = 4/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++FFQ++    P+GDQP AI +LL    +  K Q+LLG TG+GKTFT+A +I   ++P +
Sbjct: 1   MSFFQLKKHLKPAGDQPKAIDKLLSNFEAGAKAQVLLGATGTGKTFTIANIIAKYKKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLY EFK  FP+NAVEYF+SYYDYYQPEAY+P  D YIEK+SSIN+ +D+
Sbjct: 61  VLAHNKTLAAQLYREFKELFPNNAVEYFISYYDYYQPEAYIPEKDLYIEKDSSINDILDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            RHSAT+S++ER D IVV+SVSCIYG+GS E Y  M +QL  G  ++  +L   LV+  Y
Sbjct: 121 YRHSATKSVIERADTIVVASVSCIYGLGSPEHYVNMRIQLLKGQKLDPLKLSRQLVEIGY 180

Query: 318 KRQDIGIIRGTFRVCG-DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R D    RGTF V G DSIEI PSH +D+  R+  + N+I+ I E   L    IR ++ 
Sbjct: 181 ERNDFSFKRGTFSVRGGDSIEIVPSHADDIVIRIEFWDNEIDSIKELDLLNRHVIREIDY 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++  +HYV P+P L  A++ I+++LK R+   + +G+ +EAQRL QR  YD+EM++  
Sbjct: 241 TVLFPATHYVAPKPALMEAIEKIEKDLKARVEYFKSQGKEIEAQRLWQRTMYDIEMIKEI 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C+ IENYSRY  GR  GEPP TL +Y+PED LL VDESHVTIPQ+ GMY GD  RK  
Sbjct: 301 GHCKGIENYSRYFDGRKEGEPPFTLLDYMPEDFLLIVDESHVTIPQVRGMYNGDISRKQK 360

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YG+RLP+ +DNRPL+F+E+       I VSATPG WE+E  +G+IVEQI+RPTGL+D
Sbjct: 361 LVDYGWRLPAALDNRPLKFDEFLRKINKVIFVSATPGDWEIEFSKGVIVEQIVRPTGLLD 420

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R    Q+ED+  EI     +  R ++   TKR++ED+  YL ER I+ RY+HS++
Sbjct: 421 PEIEVRPTTNQLEDLIKEILKVKARNERAIVLTTTKRLSEDVANYLIERRIKARYLHSDL 480

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
             +ER + I++LR G  DV+VG+NLLREG+D+PE  LVAIL+ADKEGFLRS TSLIQTIG
Sbjct: 481 DAIERAKAIKELREGSIDVIVGVNLLREGIDMPEVSLVAILEADKEGFLRSTTSLIQTIG 540

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           R ARN+N K +LYAD IT+S++ AIDET RRRE Q  +N++H I P+S+ + + E++   
Sbjct: 541 RVARNINGKAMLYADRITESMKKAIDETNRRREIQKRYNEEHGIIPKSIVKPVKELLS-- 598

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +ED     +     +   ++K     L  L K M  A+    FE+AA+IRDEI  LK 
Sbjct: 599 -IEDLDYVKVPDSIPKDIKTEKDLVERLNKLEKMMWEASKKWEFEKAAKIRDEINELKK 656


>gi|116071728|ref|ZP_01468996.1| excinuclease ABC subunit B [Synechococcus sp. BL107]
 gi|116065351|gb|EAU71109.1| excinuclease ABC subunit B [Synechococcus sp. BL107]
          Length = 679

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/676 (50%), Positives = 452/676 (66%), Gaps = 17/676 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +   Y P GDQP AI QL+ G++  E+ Q LLG TG+GKTFTMA VI    RPA+
Sbjct: 1   MPAFDLTAPYSPKGDQPTAITQLVDGVNGGERYQTLLGATGTGKTFTMANVIAQTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPENAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G ++  +  L  LV  QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGATLNIRGQLRELVNNQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D  I RG FR+ GD +EI P++ +D   R+ +FG+++E I    P TG+ ++++E +
Sbjct: 181 SRNDTEIARGRFRMKGDVLEIGPAY-DDRLVRIELFGDEVEAIRYVDPTTGEILQSLEEV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP+  L+ A+K I+ EL+ RL  L  EG+LLEAQRLEQR  YDLEML+  G
Sbjct: 240 NIYPAKHFVTPKDRLDDAIKAIRTELRDRLDFLNGEGKLLEAQRLEQRTKYDLEMLDQVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLAGREAGTPPECLIDYFPDDWLLIVDESHVTCSQLQAMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+  E+      T+ VSATPG+WELE   G + +Q+IRPTG++DP
Sbjct: 360 VDHGFRLPSAADNRPLKGAEFWEKARQTVFVSATPGNWELEVSTGQVAQQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    QV+D+  EI   A +  R+L+T LTKRMAEDLT+YL E   RVRY+HSE+ 
Sbjct: 420 LIEVRPTTGQVDDLLGEIRDRAAKNQRVLVTTLTKRMAEDLTDYLAENGTRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V  K +LYA+ +T S+  AID T +RR+ Q  +N++HNI P +  +K    I   L
Sbjct: 540 AARHVEGKALLYAENMTDSMLKAIDVTEKRRKIQQTYNEEHNIVPTAAGKKASNSILSFL 599

Query: 738 LEDAATTNISIDAQQLSLSKK----------------KGKAHLKSLRKQMHLAADNLNFE 781
                      DA  + ++ K                     +  L  +M  AA  L+FE
Sbjct: 600 ELSRKLKQDGPDADLVEVAGKAVRALENDADAGLALEALPELIDQLESKMKDAAKKLDFE 659

Query: 782 EAARIRDEIKRLKSSP 797
           EAA +RD +K+L+   
Sbjct: 660 EAANLRDRVKQLRQKM 675


>gi|167750402|ref|ZP_02422529.1| hypothetical protein EUBSIR_01376 [Eubacterium siraeum DSM 15702]
 gi|167656553|gb|EDS00683.1| hypothetical protein EUBSIR_01376 [Eubacterium siraeum DSM 15702]
 gi|291530927|emb|CBK96512.1| Excinuclease ABC subunit B [Eubacterium siraeum 70/3]
          Length = 652

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/660 (50%), Positives = 460/660 (69%), Gaps = 10/660 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F ++++Y P GDQP AI  L  G+   +K Q+LLGVTGSGKTFTMA +IE + RP +
Sbjct: 1   MDKFVLKSNYKPMGDQPQAIDSLANGVLDGDKEQVLLGVTGSGKTFTMANIIEKVNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAY+P TD YIEK+S+IN++IDR
Sbjct: 61  ILAHNKTLAAQLCSEFKEFFPDNAVEYFVSYYDYYQPEAYIPSTDAYIEKDSAINDEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIY +GS E Y + ++ ++ G    + +++  LV+ QY
Sbjct: 121 LRHSATAALAERRDVIIVASVSCIYSLGSPEDYRENMLSIREGQERSRDDIIKRLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS-HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R D+  IR  FRV GD +E+FP+    D A R+  FG++I+ ISE   +TG+  R    
Sbjct: 181 ERNDMNFIRNKFRVRGDVLEVFPAGSTSDKAIRIEFFGDEIDRISEIDIVTGEVKRRFSH 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           + I+  SHY+  +  L  ++  I+ E++ R+       +L+EAQR+EQR  YD+EML   
Sbjct: 241 VAIFPASHYIVSKARLENSLTEIENEMEERVKFFTDNHKLIEAQRIEQRTRYDMEMLREI 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G+C+ +ENYSR L GR PG  P TL  + P+D L+F+DESHVT+PQ+ GMY GDF RK  
Sbjct: 301 GTCKGVENYSRVLAGRAPGSSPITLMHHFPKDFLMFIDESHVTLPQVRGMYGGDFARKKN 360

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS  DNRP+ F+E+  +    I VSATPG +E         EQ+IRPTGL+D
Sbjct: 361 LVDYGFRLPSAYDNRPMNFDEFTSMINQVIYVSATPGEYEKSHAVN-TAEQVIRPTGLLD 419

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EI+    Q+ED+Y EIN   ++G  +L+T LTK+MAEDLT Y  +  +++RYMH ++
Sbjct: 420 PIIEIKPVAGQIEDLYSEINERTKKGECVLITTLTKKMAEDLTAYYEKLGVKIRYMHHDI 479

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            ++ER+EIIRDLR+  FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIG
Sbjct: 480 DSIERMEIIRDLRMHVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIG 539

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN   KVI+YADT+T S++ A+ ET RRRE Q+++N++H I P+++ + +  V++  
Sbjct: 540 RAARNAEGKVIMYADTVTDSMEKAVTETNRRREIQMKYNEEHGITPKTIVKDVRAVLEIS 599

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +D          ++   +K + +A +K    +M  AA  L+FE AA +RD+IK L+ S
Sbjct: 600 SGKD--------KGKKRKYTKAEREALIKQYTAEMKNAAKLLDFEHAAYLRDKIKELQES 651


>gi|168705485|ref|ZP_02737762.1| excinuclease ABC subunit B [Gemmata obscuriglobus UQM 2246]
          Length = 694

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/667 (51%), Positives = 474/667 (71%), Gaps = 2/667 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             FQ+ +DY P+GDQP AI QL +G  + +KVQ+LLG TG+GKTFT + VI    +P +V
Sbjct: 3   ARFQITSDYAPAGDQPKAIEQLTQGFANGKKVQVLLGATGTGKTFTASNVIARANKPTLV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQLY EFK FF +NAV YFVSYYDYYQPEAY+P+ D YIEK+SSINE IDR+
Sbjct: 63  LAHNKTLAAQLYKEFKGFFKNNAVHYFVSYYDYYQPEAYIPQRDIYIEKDSSINENIDRL 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R +AT +L+ R D I+V+SVSCIYG+GS   Y +M+V ++ G+++++  +L  L+  QYK
Sbjct: 123 RLAATSALVSREDVIIVASVSCIYGLGSPSDYKRMMVYVRKGETLDRDNMLLRLIDIQYK 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RGT RV GD+I+++P+  E+ A+R+ +FG+D+E +S  +P++G+ IR ++ + 
Sbjct: 183 RNDVAFERGTVRVRGDTIDVWPA-SEEFAYRIELFGDDVETLSVIHPVSGETIRPLDDLY 241

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY   H+VTP   +  A+K I+EEL  RL + + EG+LLE +RL+ R  YDL+ML   G 
Sbjct: 242 IYPAKHFVTPEERVQAAIKGIEEELNQRLEQFKTEGKLLEMERLKARCRYDLDMLREVGY 301

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENY+R+ +GR PGE P TL ++ PED LL VDESHVT+PQ+ GMY GD  RK TL 
Sbjct: 302 CSGIENYARWFSGRAPGEAPYTLIDFFPEDFLLVVDESHVTLPQVRGMYFGDRSRKETLV 361

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            +GFRLPS +DNRPL+F+E+       + +SATPG +ELE+  G +VEQ+IRPTGLVDP 
Sbjct: 362 AHGFRLPSALDNRPLKFDEFEKRMTQCLCLSATPGPYELEKVGGEVVEQVIRPTGLVDPV 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + ++ AR QV+D+  E+   A +G R L+TVLTKRMAEDLT Y  +  +R +++HSE+  
Sbjct: 422 IHVKPARGQVKDLEAEVRTRAAKGERALVTVLTKRMAEDLTTYFRDAGMRCKWLHSELDA 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ERI+++R+LR G+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SLIQT+GRA
Sbjct: 482 IERIQVLRELREGQFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSDKSLIQTMGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN++VILYAD +T S+  A++ET RRRE QL +N +H I PQ+VK  I   I+   +
Sbjct: 542 ARNVNAEVILYADVVTDSMSRAMNETNRRREIQLAYNAEHGITPQTVKTAIKNEIED-EI 600

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           E       +      +        +++SL ++M  AA  L+FE A  +RD+I RL++   
Sbjct: 601 EAHQMAQAAATGSSAAAEDYVTVEYVQSLYEEMLEAAKTLDFERAQALRDQIVRLETELR 660

Query: 799 FQGLDDS 805
            +  D +
Sbjct: 661 KKHGDAA 667


>gi|319935310|ref|ZP_08009748.1| UvrABC system protein B [Coprobacillus sp. 29_1]
 gi|319809718|gb|EFW06119.1| UvrABC system protein B [Coprobacillus sp. 29_1]
          Length = 657

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/659 (52%), Positives = 462/659 (70%), Gaps = 3/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P GDQP AI QL++GI + +K Q+LLG TG+GKTFT++ VI  + +P +
Sbjct: 1   MEKFKLVSEYSPMGDQPTAIKQLVEGIRAGQKEQVLLGGTGTGKTFTVSNVIAEVNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LA QLYSE K FFP N VEYFVS +D+YQPEAY+P++D YI+K +  N +I+ 
Sbjct: 61  VLAHNKTLAGQLYSELKEFFPENRVEYFVSNFDFYQPEAYIPKSDVYIDKTAQTNYEIEM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R +A  SLLER D IVV+SV+ IYG+G+ E Y +MI  L++G  +++KELL+ LV +QY
Sbjct: 121 LRSAAMNSLLERRDTIVVASVASIYGLGNPEQYREMIFSLRVGQEIDRKELLTYLVDRQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   +GTFRV GD IEI P H E    R+ +FG+++E ISE  PLTG+ + + +T 
Sbjct: 181 QRNDIEQSKGTFRVRGDVIEIVPGHTESWLIRIELFGDEVERISEADPLTGKTLGSYKTY 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY    YVT +  +  A   I EELK RL   E+  + LE +RL+QR  +D+EML   G
Sbjct: 241 TIYPAYGYVTRKDQMLKACDTIAEELKERLKYFEEGMKPLEYERLDQRTRHDIEMLREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR++ GR  G+ P TL +Y P+D L+ VDESHV +PQ+ GM+ GD  RK TL
Sbjct: 301 MCPGIENYSRHIDGRQAGQRPYTLIDYFPDDFLMIVDESHVMLPQVRGMFNGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPLRFEE+  +    I VSATPG +ELE+  G   EQIIRPTGL+DP
Sbjct: 361 VEYGFRLPSALDNRPLRFEEFEKIINQVIYVSATPGDYELERTNGTFAEQIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R ++ Q++D+  EIN   ++  R+L+T LTKRMAEDL+ YL E  ++V Y+HS+ K
Sbjct: 421 IIEVRPSKNQIDDIISEINDRIEKNERVLITTLTKRMAEDLSAYLKEMGMKVAYLHSDTK 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EI+RDLRLGK+DVL+GINLLREGLD+PE  LV ILDADKEGFLRS+ SLIQTIGR
Sbjct: 481 TLERTEILRDLRLGKYDVLIGINLLREGLDLPEVSLVCILDADKEGFLRSQRSLIQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN + KVI+Y D +T S++ AIDET+RRRE Q E+N++H+I PQ++ ++I ++I    
Sbjct: 541 AARNAHGKVIMYGDNMTDSMKKAIDETSRRREIQEEYNREHHITPQTIHKEIRDLIQGKE 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             D AT+ +    +         K  +  L K+M  AA  L+FE A  +RD I  LK  
Sbjct: 601 TIDEATSLLKKGKKADKK---AKKKLIDDLEKEMKQAAKVLDFERAMELRDMIMELKGE 656


>gi|86142267|ref|ZP_01060777.1| excinuclease ABC subunit B [Leeuwenhoekiella blandensis MED217]
 gi|85831019|gb|EAQ49476.1| excinuclease ABC subunit B [Leeuwenhoekiella blandensis MED217]
          Length = 666

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/661 (50%), Positives = 460/661 (69%), Gaps = 5/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q+++ P+GDQP AI QL+ GI + E+ Q LLGVTGSGKTFT+A V++ +Q+P +V+A
Sbjct: 3   FNIQSEFKPTGDQPGAIEQLVGGIDAGERYQTLLGVTGSGKTFTVANVLQEVQKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P + TYIEK+ SINE+I+++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYIPTSGTYIEKDLSINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IVV+SVSC+YGIG+   + + ++ L+    + + +LL  LV+  Y R
Sbjct: 123 STTSSLLSGRRDIIVVASVSCLYGIGNPVEFQKNVIALERDMVISRTQLLKRLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RG FR+ GD+++I+P + +D A+RV  FG++IEEI  F   T + +   + + I
Sbjct: 183 TTAEFNRGNFRIKGDTVDIYPGY-DDHAFRVHFFGDEIEEIEAFDVTTNEVLEKYDRLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I  ++  ++   ++ G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLQNAIDQIGFDMVKQVEYFKEIGKHLEAKRLEERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ +DESHVT+ Q+S MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVIDESHVTVSQVSAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL++ +G  VEQIIRPTGL+DP V
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQKSEGTYVEQIIRPTGLLDPIV 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI    ++  R L+T LTKRMAE+LT+YL   +IR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLIEEIQKRVEKDERTLVTTLTKRMAEELTKYLTRVDIRTRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QTIGRAA
Sbjct: 482 ERVEIMSDLRKGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736
           RN+N   I+YADTIT+S+Q  ID +  RR+KQ+ +N+KH + P ++K+ +   +   +  
Sbjct: 542 RNINGLAIMYADTITRSMQETIDTSEYRRQKQIAYNEKHGLKPMAIKKSLDNALAKKEKF 601

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             E    TN++ +     +SK K +  ++  RKQM  AA  L+F EAA++RD IK  +  
Sbjct: 602 KFEAEELTNVAAEPDTAYMSKPKLEKLIRDTRKQMEAAAKELDFMEAAKLRDRIKNYQEQ 661

Query: 797 P 797
            
Sbjct: 662 V 662


>gi|255993949|ref|ZP_05427084.1| excinuclease ABC subunit B [Eubacterium saphenum ATCC 49989]
 gi|255993617|gb|EEU03706.1| excinuclease ABC subunit B [Eubacterium saphenum ATCC 49989]
          Length = 653

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/657 (50%), Positives = 463/657 (70%), Gaps = 6/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P GDQ  AI +L KGI    + Q L+GVTGSGKTFTMA +IE  Q+P +V++
Sbjct: 3   FKLHSKFSPMGDQKPAIEKLAKGIEEGRRHQTLMGVTGSGKTFTMAGLIEKAQKPTLVIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYF+SYYDYYQPEAY+P TDT+I+K++S N +ID++RH
Sbjct: 63  HNKTLAGQLYGEFKEFFPENAVEYFISYYDYYQPEAYIPSTDTHIDKDASTNFEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+GS   Y   ++ +++G+   + E+L  LV+ QY R 
Sbjct: 123 SATASLAERRDVIIVASVSCIYGLGSPFDYETQMLSIRLGEEKSRDEILKKLVEIQYHRA 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG+FRV GD I+I+PS  E+   R+ MFG++IE+I E   +TG+ +   + I IY
Sbjct: 183 DIDFSRGSFRVRGDVIDIYPSGSEN-PVRIEMFGDEIEDIREMNAVTGKLLGRRKHIAIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY++    L++A+  I ++L  RL   ++ G+ LEAQRLE+R  YD+E++   G+C+
Sbjct: 242 PATHYISTPDKLSSAITQISKDLGERLKWFKENGKFLEAQRLEERTRYDIELINEMGTCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+RY+ G   GE P TL +Y P+D L  +DESHV +PQ+  MY GD  RK TL +Y
Sbjct: 302 GIENYARYINGLKEGERPYTLIDYFPDDFLTIIDESHVMLPQLRAMYAGDRSRKTTLVDY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL+F E+  L    + VSATP  +E E+  GI  EQIIRPTGL++P ++
Sbjct: 362 GFRLPAALDNRPLKFSEFEELVNQVVYVSATPAEYEKEKSGGITCEQIIRPTGLLEPEID 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+  EIN  A++G R+L+T LTK+MAE L+ +L + +I+  YMHS++  +E
Sbjct: 422 VRPIEGQIDDLIGEINKVAERGERMLITTLTKKMAESLSAFLIDADIKACYMHSDIDAIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIR+LRLGK+DVL+GINLLREGLDIPE  +VAILDADKEGFLR++TSLIQTIGRAAR
Sbjct: 482 RMEIIRELRLGKYDVLIGINLLREGLDIPEVSVVAILDADKEGFLRTETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VILYAD I+ +++ A+DETTRRR+ Q  +N++HNI P+S+++ I E I+  +  +
Sbjct: 542 NANGRVILYADGISNAMKNAMDETTRRRKIQQRYNEEHNITPKSIQKDIRESIEATIEVE 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                     +   +SKK+     K + K+M  AA +L FE AA +R+ +   ++  
Sbjct: 602 EEELK-----KPQEMSKKELSDFTKKIEKEMKQAAKDLQFERAAELREILFEYRARL 653


>gi|169335817|ref|ZP_02863010.1| hypothetical protein ANASTE_02243 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258555|gb|EDS72521.1| hypothetical protein ANASTE_02243 [Anaerofustis stercorihominis DSM
           17244]
          Length = 663

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/659 (51%), Positives = 457/659 (69%), Gaps = 2/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + PSG QP  I +L K I S  + Q LLGVTG GKT+ MAK+IE +QRPA+
Sbjct: 1   MPEFKVHSPFEPSGGQPEVIDKLSKSILSGNRDQTLLGVTGCGKTYIMAKIIEKVQRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MA NK LAAQL +EF++FFP NAVEYFVSYYDYYQPEAYVP  D YI K+SSIN+ ID+
Sbjct: 61  IMAHNKTLAAQLANEFRSFFPDNAVEYFVSYYDYYQPEAYVPGRDLYIAKDSSINDDIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+++SVSCIYG+GS   Y + ++ L+ G   E+ +++  L+  QY
Sbjct: 121 LRHSATSALFERKDVIIIASVSCIYGLGSPFHYKEQVLSLRPGMIKERDDVIRKLIDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI   RGTFRV GDS+E+FP++  + A R+  F ++I+ I E   LTG+ IR+++  
Sbjct: 181 TRNDIDFHRGTFRVRGDSVEVFPANSSEEAIRIEFFDDEIDRILEINSLTGEIIRSIKHP 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SHYVT   ++N A+K I EELK+   E EK G+LLEAQR+ +R  YD+EML   G
Sbjct: 241 FIYPASHYVTDEVSINRALKSISEELKVTAEEFEKNGKLLEAQRIRERTNYDIEMLREIG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC+ IENYSR+L    PG PP TL +Y P+D + F+DESHV++PQI GMY GD  RK  L
Sbjct: 301 SCKGIENYSRHLNDLPPGAPPYTLLDYFPKDFVTFIDESHVSVPQIRGMYAGDRARKMNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL FEE+       + VSATP  +E E+ +  I E I+RPTGL+DP
Sbjct: 361 VDYGFRLPSALDNRPLNFEEFEERMNQLVYVSATPNDYEKERSKE-IAECIVRPTGLIDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++  + Q+ED+   I     +  ++L+T LTKRMAEDLT YL E  IRV Y+HS+V 
Sbjct: 420 KITVKETKGQIEDLIGRIKEKTDKHEKVLVTTLTKRMAEDLTNYLSEVGIRVEYLHSDVD 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+++I+DLR   FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TIERMKLIKDLRDDVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR++  +V++YAD +T S++ AI ET RRR+ Q E+N+KH+I P+ + +     +  + 
Sbjct: 540 AARHLGGEVVMYADKMTPSMERAIGETDRRRKIQSEYNEKHHITPKGIVKSTENAMSALS 599

Query: 738 LEDAATTNISIDAQQLSLS-KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +ED    ++           +      ++ L  QM L A NL FE AA++RDEI +LK 
Sbjct: 600 IEDVNAEDVVKKITSNKEEFEHDVDKEIELLTTQMKLYAKNLEFELAAKLRDEIDKLKK 658


>gi|37521424|ref|NP_924801.1| excinuclease ABC subunit B [Gloeobacter violaceus PCC 7421]
 gi|81834371|sp|Q7NJH7|UVRB_GLOVI RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|35212421|dbj|BAC89796.1| excinuclease ABC subunit B [Gloeobacter violaceus PCC 7421]
          Length = 680

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/676 (51%), Positives = 452/676 (66%), Gaps = 17/676 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   Y P+GDQP AIAQL  G       Q LLG TG+GKTFT+A VIE + +P +V+A
Sbjct: 6   FVVSAPYRPTGDQPRAIAQLSAGALGGVTFQTLLGATGTGKTFTIANVIEKVGKPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK +SIN++ID +RH
Sbjct: 66  HNKTLAAQLCNELREFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKSASINDEIDMLRH 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+SVSCIYG+G  E Y +  + LK+G +++Q+ELL  LV  QY+R 
Sbjct: 126 SATRSLFERRDVIVVASVSCIYGLGMPEEYLRAAIPLKVGSNIDQRELLRQLVTVQYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI + RG FRV GD +EI P++ ED   RV  FG+++E +    P+TG+ +R+V ++ IY
Sbjct: 186 DIDLGRGRFRVRGDVVEIGPAY-EDRIIRVEFFGDEVEAVRWLDPVTGEVVRSVNSLNIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP   L  A   I++EL+ R+ ELE E +LLEAQR++QR  YDLEML   G C 
Sbjct: 245 PAKHFVTPEEQLEQACIAIEQELEARVAELEGENKLLEAQRIKQRTRYDLEMLREVGYCN 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSR+L  R PGE P  L +Y P+D LL VDESHVTIPQI GMY GD  RK  L ++
Sbjct: 305 GVENYSRHLAARRPGEAPSCLIDYFPQDWLLVVDESHVTIPQIRGMYNGDAQRKKVLIDH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG------------IIVEQI 548
           GFRLPS  DNRPL+  E+       I VSATPG WE+E   G             + EQI
Sbjct: 365 GFRLPSAADNRPLKAPEFWDKVRQAIFVSATPGDWEVELSGGGRDPETGRMAGEHVAEQI 424

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTG++DP V +R    QV+D+  EI+    +  R+L+T LTKRMAEDLTEY  ER ++
Sbjct: 425 IRPTGVLDPEVFVRPVAGQVDDLLHEIHDRVARRERVLVTTLTKRMAEDLTEYFQERGVK 484

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HSE++ +ERIEI++ LR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++
Sbjct: 485 VRYLHSEIQAIERIEILQALRQGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAE 544

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAAR+V  +VI+YAD +T S+  AI ET RRR+ Q  +N  H + PQ + ++
Sbjct: 545 RSLIQTIGRAARHVRGQVIMYADRLTASMDKAISETERRRQIQRAYNAAHGLTPQPIVKR 604

Query: 729 IM--EVID--PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           +    ++D   +          +  A    ++       +  L  QM  AA  L FE+AA
Sbjct: 605 LDANSILDYLAVSRRLNQQELEAAAAAPAEVALADIPELVSQLEIQMRDAAKKLEFEKAA 664

Query: 785 RIRDEIKRLKSSPYFQ 800
             RD+I +L+     +
Sbjct: 665 EYRDKIHKLRERLLGK 680


>gi|163846641|ref|YP_001634685.1| excinuclease ABC subunit B [Chloroflexus aurantiacus J-10-fl]
 gi|222524438|ref|YP_002568909.1| excinuclease ABC subunit B [Chloroflexus sp. Y-400-fl]
 gi|163667930|gb|ABY34296.1| excinuclease ABC, B subunit [Chloroflexus aurantiacus J-10-fl]
 gi|222448317|gb|ACM52583.1| excinuclease ABC, B subunit [Chloroflexus sp. Y-400-fl]
          Length = 664

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/662 (51%), Positives = 464/662 (70%), Gaps = 5/662 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  Y P+GDQP AI QL+ G+ +  + Q LLG TG+GKTF MA +   MQRP +V+A
Sbjct: 3   FRIEAPYQPTGDQPRAIEQLVAGLRAGYRHQTLLGATGTGKTFVMAHIFAQMQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L +QL++EF+ F P  AVE F+SYYD Y PEAYVP  D YIEKE+SINE+IDR+RH
Sbjct: 63  HNKTLVSQLWAEFREFLPDAAVEMFISYYDEYTPEAYVPSKDLYIEKEASINEEIDRLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++LL R D ++V+SVS I+G+GS   Y Q  V L++G+   + +L+  L+  Q++R+
Sbjct: 123 AATQALLSRRDVLIVASVSAIFGLGSPHDYGQEKVTLRVGEVRNRDKLMRQLIDLQFERK 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+++I P++ E  A RV  +G++IE I E  PLTG+ +     ++IY
Sbjct: 183 DMDFQRGTFRVRGDTLDIIPANAE-TAIRVEFWGDEIERIVELDPLTGEVLCKHAVVEIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT +  L  A+  I++EL  R+ ELE  G+LLEAQRL+QR  YD+EML   G C 
Sbjct: 242 PAKHFVTTKEKLQLAIASIQDELAERVRELEAAGKLLEAQRLKQRTLYDIEMLSEVGYCS 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR PG+ P TL +Y P+D L+F+DESH+T+PQ+ GMY GD  RK TL ++
Sbjct: 302 GIENYSRHLDGRAPGQTPWTLLDYFPDDFLIFIDESHITLPQLRGMYNGDRQRKQTLVDF 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+       I VSATPG +E E+ +  IVEQIIRPTGL+DP +E
Sbjct: 362 GFRLPSALDNRPLRFEEFEQHVYQVIYVSATPGPYEREKSEQ-IVEQIIRPTGLLDPEIE 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+  EI    ++  R+L+T LTKRMAEDL +YL E  +R  Y+H+++ T+E
Sbjct: 421 VRPTRGQIDDLLGEIRRRVERKQRVLVTTLTKRMAEDLADYLKEMGVRTMYLHADIDTIE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS+TSLIQ IGRAAR
Sbjct: 481 RVEILRDLRLGVYDVVVGINLLREGLDLPEVSLVAILDADKEGYLRSETSLIQIIGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI---L 737
           ++  KVI+YADTIT+S++ AI ET RRR+ Q+ HN ++NI PQ + + + ++ D I    
Sbjct: 541 HIEGKVIMYADTITRSMEAAIRETQRRRDIQMAHNLRYNIKPQGIAKGVRDLTDRIRKMA 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            E          A  + L + +    +K L KQM  AA  L FE+AA +RD+I  L+ + 
Sbjct: 601 EERGEYVATPTTAVAVDLPRDEVLKLIKDLEKQMKQAAKELAFEKAAALRDQIVELRKTL 660

Query: 798 YF 799
             
Sbjct: 661 AL 662


>gi|320011418|gb|ADW06268.1| excinuclease ABC, B subunit [Streptomyces flavogriseus ATCC 33331]
          Length = 706

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/698 (50%), Positives = 482/698 (69%), Gaps = 31/698 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++   + +  F++ + Y PSGDQP AIA+L + + + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVSKIERSVAPFEVVSPYQPSGDQPTAIAELDRRVRAGEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +VQLK+GD V++ +L
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVQLKVGDEVDRDQL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V+ QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG
Sbjct: 182 LRRFVEIQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIEALSTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I    ++ ++  SHYV     +  A+  I++EL+ RL ELEK+G++LEAQRL  R TY
Sbjct: 241 EVISEDTSLHVFPASHYVAGPERMEKAVTGIEKELEERLAELEKQGKMLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EML   G+C  +ENYS +  GR+PG  P TL +Y PED LL +DESHVT+PQI  MY 
Sbjct: 301 DIEMLRQIGTCSGVENYSMHFDGRSPGTAPHTLLDYFPEDFLLVLDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL++EE+      T+ +SATPG +EL +  G  VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLKWEEFLGRINQTVYLSATPGKYELSRGDG-FVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+M+EDLT+Y  E  I+
Sbjct: 420 IRPTGLVDPEVVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMSEDLTDYFLELGIQ 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADK+GFLRS 
Sbjct: 480 VRYLHSDVDTLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD +T ++  AIDET RRREKQ+ +N +  ++PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADKVTPAMAQAIDETNRRREKQIAYNTERGVDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKK-----------------------------K 759
           I +++  I  E+  T  +     + +   K                             +
Sbjct: 600 INDIVASIAREEVDTEQLLGTGYRQAKDTKAPVPALGGKAGAGAKAKKDGAVVTDRPATE 659

Query: 760 GKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
               ++ +  +M  AA +L FE AAR+RDE+  LK   
Sbjct: 660 LAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELKKEL 697


>gi|223937920|ref|ZP_03629819.1| excinuclease ABC, B subunit [bacterium Ellin514]
 gi|223893321|gb|EEF59783.1| excinuclease ABC, B subunit [bacterium Ellin514]
          Length = 682

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/658 (52%), Positives = 463/658 (70%), Gaps = 7/658 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + + Y P+GDQP AIA+L +G+ S  K Q LLGVTGSGKTFT+A VI+ + +P +V+
Sbjct: 1   MFDLVSSYPPAGDQPQAIAKLTEGLLSGAKHQTLLGVTGSGKTFTVANVIKNINKPTLVI 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK LAAQLY+EFK+FFP+NAVEYFVSY+DYYQPEAY+PRTDT++EK+SS+NE+I+RMR
Sbjct: 61  SHNKTLAAQLYAEFKSFFPNNAVEYFVSYFDYYQPEAYIPRTDTFVEKDSSVNEEIERMR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            S   SL  R D +VV+SVSCIYGIGS E Y  +I+ + +G  + +++ L+ LV  QY R
Sbjct: 121 LSTMSSLFSRQDVVVVASVSCIYGIGSKEDYEALIIPICVGQQITREQFLNRLVDLQYTR 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RG FRV GD++E+ P+  ED   R+  FG +IE I+ F PLTG K+  + T  +
Sbjct: 181 NDIEFTRGQFRVRGDTVELCPAGRED-GLRIEFFGEEIERITRFEPLTGHKLETLNTAVV 239

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +VT    +  A+  I+EEL  R+   EK G+LLEAQR++QR  YDLEM+E  G C
Sbjct: 240 YPAKQFVTTADKMKPAILSIREELGDRIAWFEKHGKLLEAQRIKQRTEYDLEMMEEMGFC 299

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENY+R++ GR PG  P TLF++ P+D LL +DESH TIPQI GMY GD  RK  L E
Sbjct: 300 SGIENYTRHINGRAPGSRPTTLFDFFPKDHLLVIDESHATIPQIGGMYAGDRSRKTVLVE 359

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL F+E+  ++  T+ VSATP   E+E  QG + EQIIRPTGLVDP +
Sbjct: 360 YGFRLPSALDNRPLNFDEFQHMQGPTLYVSATPSPREIEWSQGRVAEQIIRPTGLVDPTI 419

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            ++  + Q++D+ +E         RIL+T LTKR AE+LT+YL    I VRY+HSE+  +
Sbjct: 420 TVKPLQGQIDDLIEEARKRVDSKERILVTTLTKRTAEELTDYLRNIGINVRYLHSEIDAI 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R LR G+FDVLVGINLLREGLD+PE  LVAILDADKEG+LRS TSLIQT GRAA
Sbjct: 480 ERVEILRGLRKGEFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSVTSLIQTAGRAA 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL- 738
           R++N +VILYAD +T+SIQ  +  +  RRE+QL +NK+HNI P+SV   + E +      
Sbjct: 540 RHLNGEVILYADVMTQSIQKFLAVSKFRRERQLAYNKEHNITPKSVSRAVEESLSTNKEF 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +D A + +        +++      +K L ++M  AA+NL FE+AA +RD+I+ LK S
Sbjct: 600 KDQANSMLKESGVDFDVTE-----TIKELEEEMLAAANNLEFEKAALMRDQIRELKRS 652


>gi|284038488|ref|YP_003388418.1| excinuclease ABC subunit B [Spirosoma linguale DSM 74]
 gi|283817781|gb|ADB39619.1| excinuclease ABC, B subunit [Spirosoma linguale DSM 74]
          Length = 673

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/664 (49%), Positives = 460/664 (69%), Gaps = 11/664 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI +L+KG++  E  Q+LLGVTGSGKTFT+A +I    RP +V++
Sbjct: 3   FKLTSEFQPTGDQPKAIEKLVKGVNEGEPAQVLLGVTGSGKTFTIANLIARTNRPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+  T+TYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPENAVEYFISYYDYYQPEAYIATTNTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +L+  R D IVV+SVSCIYG+G+ E + + +V++ +G+ + +   L  LV   Y R
Sbjct: 123 AATSALMSGRRDVIVVASVSCIYGMGNPEEFKRNVVRIGVGEQMSRNNFLHQLVSILYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +    RG FRV GD+++++ ++  D A+RV  FG++IE I    P TG+K+     + I
Sbjct: 183 TEGEFQRGNFRVKGDTVDLYVAYA-DFAYRVIFFGDEIETIQRIDPGTGKKLSEESMVTI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VT R TLN A+  I++++  ++   E E R +EA R+ +R  +DLEM+   G C
Sbjct: 242 FPANLFVTGRDTLNGAIYQIQDDMVAQVRYFESELREMEATRIRERTEFDLEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY   R PG+ P  L +Y P+D L+ VDESHVTIPQI  M+ GD  RK  L +
Sbjct: 302 SGIENYSRYFDKRLPGQRPFCLLDYFPDDFLMVVDESHVTIPQIRAMWGGDRSRKTALVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS MDNRPL F+E+  L   +I VSATP  +EL + +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPSAMDNRPLTFQEFEDLSGQSIYVSATPSDYELRKSEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ + I+   ++G R+L+T LTKRMAE+LT+YL    I+ RY+HSEVKTL
Sbjct: 422 EVRPSLNQIDDLLEAIDGRIKRGERVLVTTLTKRMAEELTKYLDRVGIKTRYIHSEVKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EI+RDLRLG FDVLVG+NLLREGLD+PE  LVAI+DADKEGFLR   SLIQTIGRAA
Sbjct: 482 DRVEILRDLRLGNFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRDIRSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N KVI+YAD IT S+Q AIDET RRR  QLE+N  + I P +V +    ++    + 
Sbjct: 542 RNANGKVIMYADRITGSMQKAIDETNRRRAIQLEYNTDNGITPTTVLKSRESIMGQTKVA 601

Query: 740 DA---------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           D+             I+ D     + K   +  ++  + +M  AA +L+F EAAR+RDE+
Sbjct: 602 DSKAKHFYVEPEEIRIAADPVVRYMGKGDLEKIIQETQSKMERAAKDLDFMEAARLRDEL 661

Query: 791 KRLK 794
            +L+
Sbjct: 662 FQLR 665


>gi|332827826|gb|EGK00561.1| UvrABC system protein B [Dysgonomonas gadei ATCC BAA-286]
          Length = 671

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/666 (50%), Positives = 455/666 (68%), Gaps = 10/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y+P+GDQPAAIA L +GI      Q LLGVTGSGKTFT+A VI+ + +P +V++
Sbjct: 3   FKLTSYYNPTGDQPAAIAALSEGILQNLPSQTLLGVTGSGKTFTVANVIQNVNKPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P T+TYIEK+ SINE+I+++R 
Sbjct: 63  HNKTLAAQLYSEFKTFFPDNAVEYFVSYYDYYQPEAYIPSTNTYIEKDLSINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           + T SLL  R D IVVSSVSC+YG+G+ E +    + + +G  + +   L +LV   Y R
Sbjct: 123 ATTTSLLSGRRDVIVVSSVSCLYGMGNPEDFENSTISIHVGQKLVRDVFLRALVSALYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +I    G FRV GD++++F ++  D   RV  +G++IE I    PL+G KI   +  +I
Sbjct: 183 NEIEPKAGNFRVKGDTVDVFLAYG-DPIVRVVFWGDEIESIECLDPLSGVKIDKYDDFRI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +  +  A+  I+ +L  ++  L+  G+ LEA+RL +R+TYDLEM+   G C
Sbjct: 242 YPANLFVTTKDRMVRAIAEIEIDLGRQVDFLQSIGKQLEAKRLYERVTYDLEMIREVGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY   R PG  P  L ++ PED +L +DESHVTIPQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDNRKPGTRPFCLLDFFPEDFMLVIDESHVTIPQIRAMYGGDHSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL+FEE+  L P TI VSATP  +EL + +GI+VEQ+IRPTGL+DPP+
Sbjct: 362 YGFRLPAALDNRPLKFEEFESLVPQTIYVSATPADYELMKSEGIVVEQLIRPTGLLDPPI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ +EI     +  R L+T LTKRMAE+LT YL    ++  Y+HS+V TL
Sbjct: 422 DVRPSLNQIDDLMEEIQTRVDKNERTLVTTLTKRMAEELTAYLLNNGMKCSYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 DRVQIMDDLRSGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI YAD IT+S++  I+ET RRRE Q+ +NK+H I PQ +++    V      E
Sbjct: 542 RNVNGKVIFYADKITESMEKTINETNRRREIQMAYNKEHGITPQQIRKARTSVFSLRKEE 601

Query: 740 --------DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                     ++  I+ + +   ++K + K  ++  RKQM  AA  L F EAA+ RD++ 
Sbjct: 602 QFSVKSYTQDSSIAIASEDKIQYMTKDELKKAIEKARKQMSAAAKKLEFLEAAQFRDQVI 661

Query: 792 RLKSSP 797
           +L+   
Sbjct: 662 KLEDEL 667


>gi|86133729|ref|ZP_01052311.1| excinuclease ABC, B subunit [Polaribacter sp. MED152]
 gi|85820592|gb|EAQ41739.1| excinuclease ABC, B subunit [Polaribacter sp. MED152]
          Length = 662

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/661 (50%), Positives = 458/661 (69%), Gaps = 5/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++++ P+GDQP AI QL +G+   EK Q LLGVTGSGKTFT+A V++ +++P +++A
Sbjct: 3   FKIKSEFSPTGDQPEAIKQLSEGVKQNEKFQTLLGVTGSGKTFTIANVVKEVKKPTLILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P + TYIEK+ SINE I+R+R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPVSGTYIEKDLSINEDIERLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D +VV+SVSC+YGIG+   + + ++ +++G  + +   L  LV   Y R
Sbjct: 123 STTSSLLSGRRDVLVVASVSCLYGIGNPTEFKKNVIPVRVGQQISRTTFLHQLVTSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +I I  G F+V GD + I+PS+ ++  +RV  FG++IEEI  F       I   E + I
Sbjct: 183 TEIEIKSGKFKVKGDVVTIYPSYGDN-GYRVHFFGDEIEEIEAFDLENNTVIEKFEHLTI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+E++  ++   ++ G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANLFVTSPDVLQDAIHQIQEDMVKQVNYFKEIGKPLEAKRLEERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ +DESHVT+PQ   MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVIDESHVTVPQTHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+F+E+  ++  TI VSATP  +EL++ +G+ VEQIIRPTGL+DPP+
Sbjct: 362 YGFRLPAAMDNRPLKFDEFEAIQNQTIFVSATPADYELQKSEGVFVEQIIRPTGLLDPPI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LT+YL   +IR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLIEEIQVRVEKDERTLVTTLTKRMAEELTKYLTRVDIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR+  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRNNKSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN   I+YAD IT S+Q  IDET RRRE Q+ +N KHN  P  + +KI + +    + 
Sbjct: 542 RNVNGLAIMYADKITDSMQKTIDETERRREIQIAYNTKHNRVPTQINKKIEDTLTKSAVS 601

Query: 740 DAATTNI---SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                N    + + +   L K++ +  ++  RKQM  AA +L+F  AA++RDEI  LK  
Sbjct: 602 SFHYDNAITKAAEQELQYLPKEEIQDRIRKKRKQMEAAAKSLDFIVAAQLRDEIAVLKEQ 661

Query: 797 P 797
            
Sbjct: 662 V 662


>gi|78183661|ref|YP_376095.1| excinuclease ABC subunit B [Synechococcus sp. CC9902]
 gi|78167955|gb|ABB25052.1| Excinuclease ABC subunit B [Synechococcus sp. CC9902]
          Length = 679

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/676 (50%), Positives = 451/676 (66%), Gaps = 17/676 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +   Y P GDQP AI QL+ G++  E+ Q LLG TG+GKTFTMA VI    RPA+
Sbjct: 1   MPAFDLTAPYSPKGDQPTAITQLVDGVNGGERYQTLLGATGTGKTFTMANVIAQTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAYVP +DTYI K +SINE+ID 
Sbjct: 61  VLAHNKTLAAQLCNELREFFPENAVEYFISYYDYYQPEAYVPVSDTYIAKTASINEEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V+ ++G ++  +  L  LV  QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVKFEVGATLNIRGQLRELVNNQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D  I RG FR+ GD +EI P++ +D   R+ +FG+++E I    P TG+ ++++E I
Sbjct: 181 SRNDTEIARGRFRMKGDVLEIGPAY-DDRLVRIELFGDEVEAIRYVDPTTGEILQSLEDI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP+  L+ A+K I+ EL+ RL  L  EG+LLEAQRLEQR  YDLEML+  G
Sbjct: 240 NIYPAKHFVTPKDRLDDAIKAIRMELRDRLEFLNGEGKLLEAQRLEQRTKYDLEMLDQVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENY+R+L GR  G PP  L +Y P+D LL VDESHVT  Q+  MY GD  RK  L
Sbjct: 300 YCNGVENYARHLAGREAGTPPECLIDYFPDDWLLIVDESHVTCSQLQAMYNGDQARKKVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPL+  E+      T+ VSATPG+WELE   G + +Q+IRPTG++DP
Sbjct: 360 VDHGFRLPSAADNRPLKGSEFWEKARQTVFVSATPGNWELEVSTGQVAQQVIRPTGVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    QV+D+  EI   A +  R+L+T LTKRMAEDLT+YL E   RVRY+HSE+ 
Sbjct: 420 LIEVRPTTGQVDDLLGEIRDRAAKNQRVLVTTLTKRMAEDLTDYLAENGTRVRYLHSEIH 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEII+DLRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 480 SIERIEIIQDLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V  K +LYA+ +T S+  AID T +RR+ Q  +N++H I P +  +K    I   L
Sbjct: 540 AARHVEGKALLYAENMTDSMLKAIDVTEKRRKIQHTYNEEHGIVPTAAGKKASNSILSFL 599

Query: 738 LEDAATTNISIDAQQLSLSKK----------------KGKAHLKSLRKQMHLAADNLNFE 781
                      DA  + ++ K                     +  L  +M  AA  L+FE
Sbjct: 600 ELSRKLKQDGPDADLVEVAGKAVRALEKDADAGLALEALPELIDQLESKMKDAAKKLDFE 659

Query: 782 EAARIRDEIKRLKSSP 797
           EAA +RD +K+L+   
Sbjct: 660 EAANLRDRVKQLRQKM 675


>gi|163782904|ref|ZP_02177900.1| excinuclease ABC subunit B [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882025|gb|EDP75533.1| excinuclease ABC subunit B [Hydrogenivirga sp. 128-5-R1-1]
          Length = 664

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/657 (51%), Positives = 459/657 (69%), Gaps = 3/657 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F ++T+  P+GDQP AI +LL  +    K Q+LLG TG+GKT+T+A VIE   +P +V
Sbjct: 6   STFCLKTNLKPAGDQPKAIEELLDNLEKGVKEQVLLGATGTGKTYTIANVIEKHGKPTLV 65

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +  NKILAAQLY EFK  FP NAVE+F+SYYDYYQPEAY+P  D YIEK++SINE ++R 
Sbjct: 66  VVHNKILAAQLYREFKELFPDNAVEFFISYYDYYQPEAYIPEKDLYIEKDASINEVLERY 125

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSAT S+LER D IVV+SVSCIYG+GS E Y  M +++  G  +   + +  LV+  Y+
Sbjct: 126 RHSATISVLERRDVIVVASVSCIYGLGSPEHYENMRIRVSKGAHLNLTKFVRKLVELGYE 185

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    R TF V GD++E+ PS  ED   R+ ++ +++E I+    L    ++ +E + 
Sbjct: 186 RNDYAYKRATFSVKGDALEVIPSEAEDYTVRIELWDDEVERIAVIDTLNRHHVKELEEVS 245

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
            +  SHY+ PRPT+ +A++ I+ +L+ R+   +K+G+ +EAQRL QR  YDLEM+   G 
Sbjct: 246 FFPASHYIAPRPTVESALEEIERDLRERVDWFKKQGKQVEAQRLYQRTMYDLEMIRELGH 305

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSRY  GR PGEPP TL +Y PED LL VDESH+TIPQI  MY GD  RK  L 
Sbjct: 306 CKGIENYSRYFDGREPGEPPFTLLDYFPEDFLLVVDESHMTIPQIRAMYNGDRSRKEKLV 365

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYG+RLPS +DNRPL+FEE+       + VSATP  WE+E+ +GI+VEQI+RPTGLVDP 
Sbjct: 366 EYGWRLPSALDNRPLKFEEFLERLNQVVYVSATPSDWEIERSKGIVVEQIVRPTGLVDPE 425

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R  R Q+ED+  EI    ++  R L+   TKR+AE++ +YL ER I+  YMHSE+  
Sbjct: 426 VEVRPTRNQLEDLIREIQERVRRDERALVLTTTKRLAEEVADYLTERKIKATYMHSELDA 485

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER  I+++LR G   V+VG+NLLREGLD+PE  LVAIL+ADKEGFLRS TSLIQTIGRA
Sbjct: 486 IERARIVKELREGSVHVVVGVNLLREGLDLPEVSLVAILEADKEGFLRSYTSLIQTIGRA 545

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN K ILYAD ITKS++ AI+ET RRR+KQ ++N++H I P+S+ + I E++    L
Sbjct: 546 ARNVNGKAILYADRITKSMERAIEETNRRRKKQRKYNEEHGITPKSIVKPIKELL---AL 602

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           E+     + +   +   +++     ++ L K+M  AA N  FE+AA++RDEIK L++
Sbjct: 603 EELDYVKLPLKLPKGIKTEEDLIKRIEKLEKEMWEAAKNWEFEKAAKLRDEIKSLRN 659


>gi|304314599|ref|YP_003849746.1| excinuclease ABC, subunit B [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588058|gb|ADL58433.1| excinuclease ABC, subunit B [Methanothermobacter marburgensis str.
           Marburg]
          Length = 647

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/656 (54%), Positives = 474/656 (72%), Gaps = 14/656 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AI  L++GI++  + Q LLGVTGSGKTFT+A VIE +Q+P +V++
Sbjct: 3   FKLVSDYRPLGDQPKAIRSLVEGINAGMREQTLLGVTGSGKTFTIANVIEEVQKPTLVIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+ FFP NAVEYFVSYYD+YQPEAY+P+TDTYI+KE+SIN++IDRMRH
Sbjct: 63  HNKTLAAQLYEEFREFFPDNAVEYFVSYYDFYQPEAYIPQTDTYIDKEASINDEIDRMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LL R+D IVVSSVSCIYGIG+   Y +  + L++G S+ ++E+LSSLV  QY+R 
Sbjct: 123 SATQALLSRDDVIVVSSVSCIYGIGAPADYGEFTLHLEVGSSIGREEILSSLVSMQYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD+IEI P H      R+ +FG++++ IS  + +TG++++ ++ I ++
Sbjct: 183 DVEFDRGQFRVRGDTIEINPIHGTP-PIRIELFGDEVDSISTVHRVTGKRLQKLDRITVF 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V P   L  A++ I+EEL+ RL EL  + +LLEAQRLEQR  +D+EML   G CQ
Sbjct: 242 PAKHFVIPEDRLQRAIESIEEELEDRLRELRAQNKLLEAQRLEQRTRFDIEMLREMGYCQ 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L+GR  GE P TL +Y P+D L  +DESHVT+PQI GMY GD  RK TL EY
Sbjct: 302 GIENYSMHLSGRKWGEKPNTLLDYFPDDFLTVIDESHVTVPQIRGMYNGDRARKETLVEY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPLRF+E+       I VSATPG +EL + Q  IVEQIIRPTGLVDP V 
Sbjct: 362 GFRLPSAKENRPLRFDEFQESINQVIYVSATPGKYELSRSQN-IVEQIIRPTGLVDPEVR 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + QV+D+  EI    + G R+L+T LTKRMAEDLT+Y     +RVRY+HSE+ TLE
Sbjct: 421 IRPVKGQVDDLLSEIRRRVELGQRVLVTTLTKRMAEDLTDYYSRVGVRVRYLHSEIDTLE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR G+FD LVG+NLLREGLD+PE  LVAILDAD+EGFLRS+TSLIQTIGRAAR
Sbjct: 481 RVEIIDDLRRGEFDCLVGVNLLREGLDLPEVSLVAILDADREGFLRSETSLIQTIGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +V++YAD +T +++ A++ T RRR+ Q+E+N++H I P+S +  +           
Sbjct: 541 NVNGQVLIYADRLTDAVKAAVETTNRRRKLQMEYNRRHGIKPRSTRRTLR---------- 590

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                   + +   + + + +  +K L  +M  AA NL FE AAR+RD+I  LK S
Sbjct: 591 --EKKEKEEIKAEEIPRDELEVIIKDLEAEMREAARNLEFERAARLRDQIMSLKGS 644


>gi|295397819|ref|ZP_06807884.1| excision endonuclease subunit UvrB [Aerococcus viridans ATCC 11563]
 gi|294973954|gb|EFG49716.1| excision endonuclease subunit UvrB [Aerococcus viridans ATCC 11563]
          Length = 664

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/661 (52%), Positives = 466/661 (70%), Gaps = 2/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I  F + ++Y PSGDQP AI ++++ + + +K Q+LLG TG+GKTFTMA VI    RP +
Sbjct: 3   INQFDLVSEYEPSGDQPEAIRRIVEQVEAGDKAQVLLGGTGTGKTFTMANVIAQTNRPTL 62

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +D+YIEK +S+N++ID+
Sbjct: 63  VLAHNKTLAGQLYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDSYIEKSASVNDEIDK 122

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT S+LER D IVV+SVSCIYG+ +   Y   ++ ++ G  + +   +  LV+ QY
Sbjct: 123 LRHSATSSILERRDTIVVASVSCIYGLVNPAEYRDHVISIRQGQELSRDAFMRRLVENQY 182

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RGTFRV GD +++F S  +  + RV  FG++I+ I E   LTG+    VE  
Sbjct: 183 ERNDIDFQRGTFRVRGDIVDVFLSSHDSSSIRVEFFGDEIDRIREVDALTGEVQSEVEHF 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  +H+V     +  ++K I+ EL+ RL EL  EG+LLEAQRLEQR  YD+EML   G
Sbjct: 243 PIYPATHFVVDHEQVEKSVKSIEAELEERLKELNDEGKLLEAQRLEQRTRYDIEMLLEMG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR++ GR PGE P TL ++ PED LL VDESH+T+PQ+ GMY GD  RK  L
Sbjct: 303 YCNGIENYSRHMDGRQPGEAPYTLLDFFPEDFLLMVDESHMTMPQVRGMYNGDKARKQVL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVD 556
            ++GFRLPS +DNRPL+ EE+      T+ VSATP  +E+E+  +  IVEQIIRPTGL+D
Sbjct: 363 IDHGFRLPSALDNRPLKLEEFEEKLNQTLYVSATPADYEVEKAGEDDIVEQIIRPTGLLD 422

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P VE+R    Q++D+  EIN   ++  R+ +T LTKRMAEDLT+YL E  I+V+Y+HS++
Sbjct: 423 PTVEVRPIEGQIDDIISEINDRIEREERVFITTLTKRMAEDLTDYLEEVGIKVKYLHSDI 482

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           KTLER EIIRDLRLG FDVL+GINLLREG+D+PE  LV ILDADKEGFLR++ SLIQTIG
Sbjct: 483 KTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVTILDADKEGFLRNERSLIQTIG 542

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  VI+YAD IT S++ A+DET RRR  Q  +NK+H I PQ++K++I + I   
Sbjct: 543 RAARNQNGHVIMYADGITDSMRRAMDETARRRAIQQAYNKEHGIVPQTIKKEIRDAIRIT 602

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +     +N S+  Q  +L +   +  L+++  +M  AA +LNFE+AA +RD I  LK+ 
Sbjct: 603 HVNSEEMSN-SLTEQLRALKRDDREQALRNVELEMKQAAKDLNFEKAAELRDIIMELKAE 661

Query: 797 P 797
            
Sbjct: 662 M 662


>gi|225010655|ref|ZP_03701125.1| excinuclease ABC, B subunit [Flavobacteria bacterium MS024-3C]
 gi|225005208|gb|EEG43160.1| excinuclease ABC, B subunit [Flavobacteria bacterium MS024-3C]
          Length = 665

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/658 (50%), Positives = 455/658 (69%), Gaps = 5/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++ + P+GDQP AIAQ++ GI ++   Q L+GVTGSGKTFT+A VI+ +Q+P +++A
Sbjct: 3   FSLESPFKPTGDQPQAIAQIVSGIQAKTPSQTLVGVTGSGKTFTVANVIQEVQKPTLILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P + TYIEK+ SINE I+++R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPNNAVEYFVSYYDYYQPEAYIPTSGTYIEKDLSINEDIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D +V++SVSC+YG+G+   + + +V+++    + +   L  LV+  Y R
Sbjct: 123 STTSSLLSGREDVLVIASVSCLYGMGNPVEFEKNVVRIERDQIISRTAFLKQLVQALYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                + G+FRV GD +++FPS+  D A RV  FG++IEEI  F PL  + +   E ++I
Sbjct: 183 TTADFVNGSFRVKGDVVDVFPSYT-DHAIRVHFFGDEIEEIESFDPLHNKTLETFEQLRI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +V+    L  A+  I+E++  ++   + EG+ LEA+RLE+R T+DLEM+   G C
Sbjct: 242 FPANMFVSSPDILQNAIHSIQEDMVKQVNFFKTEGKHLEAKRLEERTTFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ VDESHVTIPQ+  M+ GD  RK  L  
Sbjct: 302 SGIENYSRYLDGRAPGTRPFCLLDYFPKDFLMVVDESHVTIPQVHAMFGGDRSRKENLVT 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L P  + VSATP  +ELEQ QG++VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEILTPQALYVSATPADYELEQSQGVVVEQIIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+  EI        R L+T LTKRMAE+L +YL    +R RY+HS+V TL
Sbjct: 422 EVRPSTNQIDDLVAEIQDRVAIDERTLVTTLTKRMAEELAKYLTNIQVRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAI+DADKEGFLR+  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGIFDVLIGVNLLREGLDLPEVSLVAIIDADKEGFLRNARSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K I+YAD  TKS+Q  IDET  RREKQ+ +N  HN  P+++ + +  V+    + 
Sbjct: 542 RNVNGKAIMYADKTTKSMQKTIDETNYRREKQIAYNTAHNTVPKALNKSLDNVLTKNSVS 601

Query: 740 D---AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   + + +     L+ ++    + + RK M  AA NL+F EAA++RDEIK L+
Sbjct: 602 AYHFEKANHRAQEPDPNYLTPEERAKMIVAKRKTMEKAAKNLDFLEAAKLRDEIKALQ 659


>gi|146299926|ref|YP_001194517.1| excinuclease ABC subunit B [Flavobacterium johnsoniae UW101]
 gi|146154344|gb|ABQ05198.1| excinuclease ABC, B subunit [Flavobacterium johnsoniae UW101]
          Length = 663

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/661 (51%), Positives = 459/661 (69%), Gaps = 5/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P GDQP AI +L +G+   EK Q LLGVTGSGKTFT+A VI+ +QRP +V+A
Sbjct: 3   FQVTSDYSPKGDQPQAIQKLAQGVVDGEKYQTLLGVTGSGKTFTVANVIQEVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEA++P T  +IEK+ SINE++++MR 
Sbjct: 63  HNKTLAAQLYSEFKQFFPNNAVEYFVSYYDYYQPEAFMPVTGVFIEKDLSINEELEKMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D +VV+SVSC+YGIG+   + + ++++     + + +LL SLV+  Y R
Sbjct: 123 STTSSLLSGRRDVLVVASVSCLYGIGNPVEFKKNVIEITRDQVISRTKLLHSLVQSLYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +     GTFR+ GD++EI+PS+ +D A+RV  FG++IEEI  F   T Q I   + + I
Sbjct: 183 TEADFNPGTFRIKGDTVEIYPSYADD-AYRVHFFGDEIEEIESFDAKTSQVIEKFKRLTI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+++L  ++   ++ G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPEVLQGAIWEIQQDLVKQVDYFKEIGKHLEAKRLEERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR  G  P  L +Y P D L+ VDESHVT+ Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGRQAGTRPFCLLDYFPSDYLMVVDESHVTVSQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL++  GI VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQKSDGIYVEQIIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +  +   R+L+T LTKRMAE+L +YL + +IR RY+HSEV TL
Sbjct: 422 EVRPSLNQIDDLIEEIQVRCELDERVLVTTLTKRMAEELAKYLTKVSIRCRYIHSEVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR+  SL QTIGRAA
Sbjct: 482 ERIEIMQDLRKGIFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRNHRSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N K I+YAD IT S+Q  IDET  RR KQ+  N ++NI PQ++ +KI        L 
Sbjct: 542 RNLNGKAIMYADKITASMQRTIDETNYRRTKQINFNVENNITPQALNKKIDSAFTKNPLV 601

Query: 740 DAA---TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +     T   + + +   LSK   +  ++  RK M  AA  L+F +AA++RD+IK+L+  
Sbjct: 602 EYELGHTLPAAAEPETAYLSKADLEKLIREKRKSMEKAAKELDFMQAAKLRDDIKKLQEQ 661

Query: 797 P 797
            
Sbjct: 662 L 662


>gi|329955051|ref|ZP_08296032.1| excinuclease ABC, B subunit [Bacteroides clarus YIT 12056]
 gi|328526341|gb|EGF53356.1| excinuclease ABC, B subunit [Bacteroides clarus YIT 12056]
          Length = 719

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/708 (47%), Positives = 477/708 (67%), Gaps = 24/708 (3%)

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           LI     LL N +I+      S+ ++S ++  F++ + Y P+GDQP AIAQL KG+    
Sbjct: 6   LISQRYVLLTNSQIFDVTF-LSLPDNSDEMNKFELTSAYRPTGDQPEAIAQLTKGVREGI 64

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
             Q LLGVTGSGKTFT+A VI  + +P ++++ NK LAAQLYSEFK FFP+NAVEY+VSY
Sbjct: 65  PAQTLLGVTGSGKTFTIANVIANINKPTLILSHNKTLAAQLYSEFKGFFPNNAVEYYVSY 124

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSV 287
           YDYYQPEAY+P +DTYIEK+ +IN++ID++R +AT +LL  R D +VVSSVSCIYG+G+ 
Sbjct: 125 YDYYQPEAYLPSSDTYIEKDLAINDEIDKLRLAATSALLSGRKDVVVVSSVSCIYGMGNP 184

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             +   ++ ++ G +  +   L  LV   Y R DI + RG FRV GD+++I+ ++ +++ 
Sbjct: 185 ADFYNNVIDVQQGKNYSRNVFLRRLVDSLYVRNDIDLNRGNFRVKGDTVDIYLAYADNL- 243

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  +G++++ I E  P++G  I   +  KIY  + ++T +     A+  I+++L+ ++
Sbjct: 244 LRIVFWGDEVDSIEEVDPISGVTIARFDAYKIYPANLFMTTKEATLRAIHEIEDDLRKQV 303

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
              E EGR  EA+RL++R+TYD+EML   G C  IENYSRY  GR  G  P  L ++ P+
Sbjct: 304 QWFENEGRPFEAKRLQERVTYDMEMLRELGHCSGIENYSRYFDGREAGTRPYCLLDFFPD 363

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           D L+ +DESHV++PQI  MY GD  RK  L EYGFRLP+ MDNRPL+FEE+  +    I 
Sbjct: 364 DFLIVIDESHVSVPQIRAMYGGDRARKTNLVEYGFRLPAAMDNRPLKFEEFESMAKQVIY 423

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
           VSATP  +EL Q +GI+VEQ+IRPTGL+DP +E+R +  Q++D+ +EI L  ++  R L+
Sbjct: 424 VSATPADYELMQSEGIVVEQVIRPTGLLDPIIEVRPSHNQIDDLMEEIQLRIERNERTLV 483

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           T LTKRMAE+LTEYL   +++  Y+HS+V TLER++I+ DLR G++DVLVG+NLLREGLD
Sbjct: 484 TTLTKRMAEELTEYLLNNSVKCNYIHSDVDTLERVKIMSDLREGEYDVLVGVNLLREGLD 543

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
           +PE  LVAILDADKEGFLRS  SL QT GRAARNVN  VI+YAD IT+S+QL IDET RR
Sbjct: 544 LPEVSLVAILDADKEGFLRSHRSLTQTAGRAARNVNGMVIMYADRITESMQLTIDETNRR 603

Query: 708 REKQLEHNKKHNINPQSVKE---------------------KIMEVIDPILLEDAATTNI 746
           REKQL++N++H I P+ +K+                     K         +E  +T  +
Sbjct: 604 REKQLKYNEEHGITPRQIKKAKNLNVFAGTEGFAESGAGKEKSSATTPRPYVEQDSTATL 663

Query: 747 SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + D     +++ + +  ++  +K M  AA  L+F EAA+ RDE+ +++
Sbjct: 664 AADPIVQYMNRAQLEKSIERTKKLMQEAAKKLDFIEAAQYRDEVLKME 711


>gi|225850330|ref|YP_002730564.1| excinuclease ABC subunit B [Persephonella marina EX-H1]
 gi|225646490|gb|ACO04676.1| excinuclease ABC subunit B [Persephonella marina EX-H1]
          Length = 662

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/659 (52%), Positives = 465/659 (70%), Gaps = 3/659 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
             T F++   + P+GDQP AI QL + +    K Q+LLG TG+GKTFT+  VIE   +P 
Sbjct: 2   GRTPFKIDMPFPPAGDQPKAINQLYENLKQGVKEQVLLGATGTGKTFTIGNVIEKYGKPT 61

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  NK LAAQLY E K  FP NAVEYFVSYYDYYQPEAYVP  D YIEK+SSIN+ ID
Sbjct: 62  LVLTHNKTLAAQLYRELKELFPDNAVEYFVSYYDYYQPEAYVPEKDLYIEKDSSINDAID 121

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           R+RHSAT+SL+ER D IVV+SVSCIYG+G+ E Y ++ + L +G  +E+++LL  LV+ Q
Sbjct: 122 RLRHSATKSLIERPDTIVVASVSCIYGLGTPEFYEKLRLHLFVGQQIERQDLLKRLVELQ 181

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV GD++EI PSH ED+  RV  FG++IE I+E         R + T
Sbjct: 182 YVRDDFSFKRGTFRVKGDTVEILPSHSEDIILRVEFFGDEIESITELDIFNRDIKRKLNT 241

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++  SHYV PRP +  A+K IK +L+  + E  K+G+ +EA RL QR  YD+EM+   
Sbjct: 242 TVVFPASHYVIPRPDMIEAIKQIKADLEREVEEFRKQGKEIEANRLWQRTNYDIEMMLEL 301

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G+C+ IENYSRY  GR PGEPP TL +Y P+D LL VDESHVTIPQ+  MY GD  RK  
Sbjct: 302 GTCKGIENYSRYFDGRKPGEPPYTLMDYFPDDFLLIVDESHVTIPQVRAMYNGDRRRKDN 361

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YG+RL S  DNRPL+FEE+       I VSATP  WE+E+ +G+IVEQIIRPTGL+D
Sbjct: 362 LVKYGWRLKSAYDNRPLKFEEFVEKIQRAIYVSATPAEWEIERSKGVIVEQIIRPTGLLD 421

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P V ++    Q++D+  EI    ++  R ++  LTK+MAE+L +YL ER+I+  Y+HSE+
Sbjct: 422 PEVVVKPTEGQIDDLISEIWNIKERNERAIVITLTKKMAENLADYLEERDIKAIYLHSEI 481

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER++II++LR GK+DV+VG+NLLREG+D+PE  LVA+LDADK+GFLRS T+LIQ IG
Sbjct: 482 DTIERVKIIKELREGKYDVIVGVNLLREGIDMPEVSLVAVLDADKQGFLRSATALIQIIG 541

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN K ILYADTIT +++ AI+ET RRR+ Q E+N+++ I P++V +++ ++I   
Sbjct: 542 RAARNVNGKAILYADTITPAMEKAINETERRRKLQKEYNERYGIEPKTVSKEVKDLIS-- 599

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            LE+     +  +  +   S++     ++SL KQM   A+   FE+AA IRD+I++L+S
Sbjct: 600 -LEEIGIYEMYENLPEDIESEEDLLKQIESLEKQMWEYAEKWEFEKAAEIRDKIEKLRS 657


>gi|254421406|ref|ZP_05035124.1| excinuclease ABC, B subunit [Synechococcus sp. PCC 7335]
 gi|196188895|gb|EDX83859.1| excinuclease ABC, B subunit [Synechococcus sp. PCC 7335]
          Length = 680

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/665 (51%), Positives = 455/665 (68%), Gaps = 7/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q  + P+GDQP AI QL+K + +  + Q LLG TG+GKT T+A+ I+ + +P +V+A
Sbjct: 5   FNIQAPFEPAGDQPQAIKQLVKNLKANREYQTLLGATGTGKTHTIARTIDQVGKPTLVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL +E + FFP N+VEYF+SYYDYYQPEAY+P TDTYI+K SSIN++ID +RH
Sbjct: 65  HNKTLAAQLCNELREFFPDNSVEYFISYYDYYQPEAYIPVTDTYIQKTSSINDEIDMLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSL ER D IVV+S+SCIYG+G    Y    + L++G    Q+++L  L   QY R 
Sbjct: 125 SATRSLFERKDVIVVASISCIYGLGIPSEYLNASIPLRVGAETNQRQVLRDLASVQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG  +++++ + IY
Sbjct: 185 DLEMGRGRFRVKGDVLEIGPAY-EDRVIRVEFFGDEIDAIRYIDPVTGATLQSMDALNIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP   L  A K I+ ELK +L  LE +G+LLEAQRLEQR  YDLEMLE  G C 
Sbjct: 244 PARHFVTPDDKLEAACKGIRAELKEQLEFLESQGKLLEAQRLEQRTRYDLEMLEEVGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP-EDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
            +ENY+R+L GR PG PP  L +Y P +D LL VDESHVT+PQI  MY GD  RK  L E
Sbjct: 304 GVENYTRHLAGRLPGAPPECLLDYFPHDDWLLAVDESHVTVPQIRAMYNGDQARKRVLIE 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS  DNRPL+ EE+       I VSATPG WE+   +G +V+QIIRPTG++DP +
Sbjct: 364 HGFRLPSAADNRPLKAEEFWDKVNQCIFVSATPGDWEIGLSEGHVVDQIIRPTGVLDPEI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R +  QV+D+  E+ + A++  R L+T LTKRMAEDLT+Y  E  +RVRY+HSEV ++
Sbjct: 424 MVRPSEGQVDDLLGEVRMRAEKDERTLVTTLTKRMAEDLTDYFNEHGVRVRYLHSEVHSI 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEII+DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ SLIQTIGRAA
Sbjct: 484 ERIEIIQDLRNGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAQRSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE----KIMEVIDP 735
           R++  K ILYAD +T+S++ AI ET RRR  Q E+N+K+ I P ++       I+  +D 
Sbjct: 544 RHIEGKAILYADNMTESMEQAIGETERRRAIQAEYNEKNGITPTALIRRQSNSILSFLDV 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               +A     ++ +    L+ +   A +  L  +M  AA  L FEEA+  RD IK L+ 
Sbjct: 604 SRRLNAEELEQAV-SHSDELALEDIPALIGQLETKMKQAAKELKFEEASEFRDRIKHLRD 662

Query: 796 SPYFQ 800
               +
Sbjct: 663 RLLGK 667


>gi|224369427|ref|YP_002603591.1| UvrB1 [Desulfobacterium autotrophicum HRM2]
 gi|223692144|gb|ACN15427.1| UvrB1 [Desulfobacterium autotrophicum HRM2]
          Length = 663

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/658 (52%), Positives = 459/658 (69%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F +++ + P+GDQP+AI  L KGI  ++K Q+LLGVTGSGKTFTMA +I    RPA+
Sbjct: 1   MTQFNIKSPFQPTGDQPSAIDFLSKGIFEKKKHQVLLGVTGSGKTFTMANIIARTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY+EFK  FP NAVEYFVSYYDYYQPEAY+P +DTYI+K+SSINE ID+
Sbjct: 61  VIAPNKTLAAQLYNEFKTLFPENAVEYFVSYYDYYQPEAYIPTSDTYIQKDSSINEMIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSATRS+L R D IVV+SVSCIYG+G+ E Y  + V++       + +LL+ LV  QY
Sbjct: 121 MRHSATRSVLARKDVIVVASVSCIYGLGAPEDYLALRVEINEEMEKSRDKLLAELVNIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RGTFRV GD +E+FP++  D A R+  FG+ I+ + E  PL G  +  ++  
Sbjct: 181 QRNDVDFHRGTFRVRGDRVEVFPAYETDKALRIDFFGDTIDGVFEVDPLKGDVLNRIKGT 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++  SHYVT   T   A++ IK ELK+R+     E RL+EAQR+E+R  YDLEM+   G
Sbjct: 241 AVFPASHYVTLNQTRQRAVETIKAELKVRIDFFRNENRLIEAQRIEERTQYDLEMINEIG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTGR  GEPPPTL +Y PED L F DESH+++ Q+  MY+ D  RK  L
Sbjct: 301 YCNGIENYSRHLTGRAQGEPPPTLIDYFPEDFLCFFDESHISVSQVGAMYKADRSRKENL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             +GFRLPS +DNRPL+F+E+    P  I VSATP  +EL      + EQI+RPTGL+DP
Sbjct: 361 VGHGFRLPSALDNRPLKFDEFKKKIPQAIYVSATPADYELSLAGTRVAEQIVRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R A TQV+D+Y+EI    +   R+L+T LTKRM+EDLT+Y  +  I+V+Y+HS++ 
Sbjct: 421 AIEVRKATTQVDDLYEEIVKRVEAEERVLVTTLTKRMSEDLTDYFSDFGIKVKYLHSDIG 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ERI+II+DLR G FDVL+GINLLREGLDIPE  LVA+LDADKEGFLRS  SL+QT GR
Sbjct: 481 TVERIDIIQDLRKGVFDVLIGINLLREGLDIPEVTLVAVLDADKEGFLRSYRSLVQTFGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   KVI+YAD IT S++ A+DET RRR  Q ++N+ HNI P ++ ++I  + D  +
Sbjct: 541 AARNACGKVIMYADRITPSMKKAMDETDRRRIIQKQYNQDHNIVPTTIIKEIK-MFDYTM 599

Query: 738 LEDAA--TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
            +D A  +  +                 + +L+ +M  AA  + FE AA +RD I+ L
Sbjct: 600 EKDLADLSPGVGESTTVYDADTDNLAEIIANLKVEMKQAARKMEFETAATLRDRIREL 657


>gi|320528723|ref|ZP_08029875.1| excinuclease ABC subunit B [Solobacterium moorei F0204]
 gi|320130933|gb|EFW23511.1| excinuclease ABC subunit B [Solobacterium moorei F0204]
          Length = 658

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/660 (49%), Positives = 444/660 (67%), Gaps = 3/660 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D   F++ + + P+GDQP AIA+L+ G+H+ +K Q+L G TG+GKTFTMA +I  M RP 
Sbjct: 2   DDRKFELVSPFKPTGDQPKAIAELVAGLHAGKKEQVLEGATGTGKTFTMANIIAQMNRPT 61

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V + NK LA QLYSEFK  FPHN VE+FVS +DYYQPEAY+P++D YIEK ++INE++D
Sbjct: 62  LVFSHNKTLAGQLYSEFKELFPHNRVEFFVSNFDYYQPEAYMPKSDMYIEKTAAINEELD 121

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
             R S   SLLER D IVV+SV+CIY       Y  M   +++G+S+++ +L+  L++ Q
Sbjct: 122 MFRESTLNSLLERRDTIVVASVACIYAASDPVEYKNMFYTIRVGESIDRNDLMRRLIELQ 181

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D+   RGT RV GD I++ PS+  +   R+ MFG +IE I+E  PLTG+ +   + 
Sbjct: 182 YSRNDVDQTRGTIRVRGDIIDLTPSYTNEFNIRIEMFGEEIERITEIDPLTGKTMNAYQF 241

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             I+  S Y   + T+  A   I+ EL+ RL    K+G+ LEA+RLEQR  +DLE L   
Sbjct: 242 YNIFPASGYARSKETMLRACDAIEAELEDRLEYFRKKGKPLEAERLEQRTRFDLEALREN 301

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS ++ GR  G+ P  LF+Y P+D LLFVDESHV++PQ+ GMY GD  RK  
Sbjct: 302 GYCSGIENYSMHIDGRKVGQRPWNLFDYFPKDFLLFVDESHVSLPQVRGMYNGDRQRKEV 361

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS ++NRP++F+E+  +    I  SATPG +ELE     + EQIIRPTGL+D
Sbjct: 362 LVEYGFRLPSALENRPMKFDEFQTMMNQVIYCSATPGDFELEAVDHHVTEQIIRPTGLLD 421

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P + ++  + Q++D+ + ++   ++  R+L+T LT RMAEDLT YL ER  ++ Y+H E 
Sbjct: 422 PKITVKPTKGQIDDICEALDARLKRNERVLITTLTVRMAEDLTAYLKERGYKIAYLHHET 481

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           KTLER E+IRDLRLGK D +VGINLLREGLDIPE  LV ILDADKEGFLRS  SLIQTIG
Sbjct: 482 KTLERTEVIRDLRLGKVDAIVGINLLREGLDIPEVSLVCILDADKEGFLRSHRSLIQTIG 541

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N +V +YAD +T S++ AI+ET RRR+ Q  +N +H I P +VK+ + E I   
Sbjct: 542 RAARNANGEVYMYADVMTDSMRYAINETERRRKIQEAYNVEHGIIPTTVKKNVEEAIRGK 601

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             ++ A   +   A+   LS+K     +  +  +M  AA +LNFE AA +RD +  LKS 
Sbjct: 602 ETKEMAAKYMQKKAK---LSQKDKAKLIADMEVEMREAAASLNFERAAELRDILFELKSE 658


>gi|124009064|ref|ZP_01693748.1| excinuclease ABC, B subunit [Microscilla marina ATCC 23134]
 gi|123985384|gb|EAY25299.1| excinuclease ABC, B subunit [Microscilla marina ATCC 23134]
          Length = 672

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/669 (49%), Positives = 470/669 (70%), Gaps = 14/669 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            +++ +D+ P GDQP AI QL+ GI + EK Q LLGVTGSGKTFT A V+  + RP +V+
Sbjct: 1   MYKLVSDFDPMGDQPKAIEQLIHGIKNGEKAQTLLGVTGSGKTFTAANVVAQLNRPTLVL 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEA++P T TYIEK+ SIN +I+++R
Sbjct: 61  SHNKTLAAQLYGEFKQFFPDNAVEYFISYYDYYQPEAFLPTTGTYIEKDLSINSEIEKLR 120

Query: 260 HSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
            SAT +LL  R D +VV+SVSCIYGIG+ E + + ++ LK+GD + + + L +LV   Y 
Sbjct: 121 LSATSALLSGRRDVLVVASVSCIYGIGNPEEFGKNVISLKVGDEISRNKFLFALVDILYS 180

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R + G  RG FRV GD+I+IF ++ +D A+R+  FG+++E I    P T QK+     I 
Sbjct: 181 RTEAGFERGNFRVKGDTIDIFVAY-DDFAFRIFFFGDEVEAIHRIDPETNQKLSEETAIS 239

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  + +VT +  L+ A+K I++++  +++  EKE R+ EA+R+++R  +DLEM+   G 
Sbjct: 240 IFPANLFVTGQDVLHQAIKEIQDDMVKQVLYFEKENRVEEAKRIKERTEFDLEMMRELGY 299

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  +ENYSRY   RNPG  P  L +Y P+D LLF+DESHVT+PQI GMY GD  RK  L 
Sbjct: 300 CSGVENYSRYFDRRNPGSRPFCLLDYFPDDYLLFIDESHVTLPQIRGMYGGDRSRKTNLV 359

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL F+E+  +    I +SATP  +ELE+ +G+IVEQ+IRPTG++DP 
Sbjct: 360 DYGFRLPSALDNRPLNFQEFETMMNQVIYISATPAEYELEKSEGVIVEQLIRPTGVIDPE 419

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + +R +  Q++D+ +EI+   +   R+L+T LTKRMAE+L++YL   +I   Y+HS+VK 
Sbjct: 420 IFVRPSLNQIDDLLEEIDATLKDDGRVLVTTLTKRMAEELSKYLDRLDINCTYIHSDVKP 479

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER+EI+R LRLG+ DVL+G+NLLREGLD+PE  LVAI+DADKEGFLR++ SLIQTIGRA
Sbjct: 480 LERVEILRQLRLGEIDVLIGVNLLREGLDLPEVSLVAIIDADKEGFLRNERSLIQTIGRA 539

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN   KVILYAD +T S++ A++ET RRR+ Q E+NKKHNI P++V++    ++    +
Sbjct: 540 ARNEKGKVILYADKMTGSMERAMNETQRRRKVQDEYNKKHNITPKTVRKSKEAIMGQTNV 599

Query: 739 EDA------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
            D              T N++ D     +++   +  +K+ +K M  AA +L+F EAAR+
Sbjct: 600 ADKRKKAGANYYTAPDTINMAADPVVSYMTQDDLQKLIKTTQKAMEKAAKDLDFMEAARL 659

Query: 787 RDEIKRLKS 795
           RDE+  LK+
Sbjct: 660 RDELADLKT 668


>gi|78357139|ref|YP_388588.1| excinuclease ABC subunit B [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|90110885|sp|Q30ZK3|UVRB_DESDG RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|78219544|gb|ABB38893.1| Excinuclease ABC subunit B [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 682

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/678 (51%), Positives = 466/678 (68%), Gaps = 16/678 (2%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F+++++Y P GDQP AI QL   I +    Q+LLGVTGSGKTFTMA  IE  QRPA++
Sbjct: 4   SVFRIESEYVPRGDQPEAITQLSDNIRAGVAHQVLLGVTGSGKTFTMAHTIERCQRPALI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY+EF+  FPHNAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ ID++
Sbjct: 64  LAPNKTLAAQLYNEFRALFPHNAVEYFVSYYDYYQPEAYVPTSDTYIEKDSSINDNIDKL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R D I+++SVSCIYG+GS E Y++M++ ++ G  +    L+  LV  QY+
Sbjct: 124 RHAATHALLTRRDVIIIASVSCIYGLGSPEYYAKMVIPVEAGQHMSMDSLIGRLVDVQYE 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV GD +E+ P++  + A R+  FG++I+ I E  PLTG  + +V    
Sbjct: 184 RNDYDFHRGTFRVRGDVLEVIPAYHHERALRLEFFGDEIDSIKEIDPLTGNVLGDVGKTV 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  SHYV+ R  LN A+  I+EEL++RL E  +  RL+EAQRLEQR   DLEM+E  G 
Sbjct: 244 IYPASHYVSDRDNLNRAVSDIREELRLRLEEYRQGNRLVEAQRLEQRTMLDLEMIEEMGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L GR  GEPP  L +Y P++ +LFVDESH+T+ Q+  MY+GD  RK TL 
Sbjct: 304 CTGIENYSRHLDGRTAGEPPACLLDYFPDNFILFVDESHITVSQVGAMYKGDRSRKQTLV 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS +DNRPL F E+       + VSATP  WEL++ +GI+VEQIIRPTGL+DP 
Sbjct: 364 DFGFRLPSALDNRPLEFSEFEKRLNQVVYVSATPSRWELDRSEGIVVEQIIRPTGLLDPL 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
            E+R  + Q+ED+  E      +  R+L+T LTKRMAEDLTEYL    +  RY+HS++ T
Sbjct: 424 TEVRPTKGQMEDLMTECRSRTARDERVLVTTLTKRMAEDLTEYLTSMGVSARYLHSDIDT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+ II+ LR  +FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQT GRA
Sbjct: 484 MERMAIIQALRRKEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTGSLIQTFGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV+ +VI+YAD++T+S+  A+ ET RRREKQ  +N++H I P SV++ +    D +  
Sbjct: 544 ARNVDGRVIMYADSVTRSMTAAMQETERRREKQRLYNEEHGIEPVSVRKSLETPFDTLYS 603

Query: 739 EDAATTN----------------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
           +  +                    + D     +S ++    ++ L ++M  +A +L FE+
Sbjct: 604 DARSAAAKGRGKGRGRQAAPAQTAAEDTTAYGISAEELGGLIQRLEREMRESARDLEFEK 663

Query: 783 AARIRDEIKRLKSSPYFQ 800
           AA +RD I+ L+     Q
Sbjct: 664 AAELRDRIRMLRERLLQQ 681


>gi|254411502|ref|ZP_05025279.1| excinuclease ABC, B subunit [Microcoleus chthonoplastes PCC 7420]
 gi|196182003|gb|EDX76990.1| excinuclease ABC, B subunit [Microcoleus chthonoplastes PCC 7420]
          Length = 665

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/666 (51%), Positives = 454/666 (68%), Gaps = 4/666 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +Q  +   GDQP AI++L   + +  + Q LLG TG+GKT+T+AKVIE   +P +
Sbjct: 1   MIPFDLQAPFEAKGDQPQAISRLTTSLQAGNRFQTLLGATGTGKTYTVAKVIEQTGKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL +E ++FFP NAVEYFVSYYDYYQPEAY+P +DTYIEK ++IN++ID 
Sbjct: 61  VLAHNKTLAAQLCNELRDFFPQNAVEYFVSYYDYYQPEAYIPVSDTYIEKSAAINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSL ER D IVV+S+SCIYG+G    Y +  + L++G  ++Q++LL  L   QY
Sbjct: 121 LRHSATRSLFERRDVIVVASISCIYGLGIPSEYLKAAIPLRVGTELDQRQLLRDLASVQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG  ++++  +
Sbjct: 181 SRNDIEMGRGRFRVKGDVLEIGPAY-EDRIIRVEFFGDEIDAIRYVDPVTGGILQSLNAL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VTP   L  A + I+ EL  ++ +L++ G+LLEAQRL+QR  YDLE+L   G
Sbjct: 240 NIYPARHFVTPDDRLEEACEAIEAELHQQIAQLQEAGKLLEAQRLDQRTRYDLELLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  GEPP  L +Y P+D LL VDESHVT+PQI GMY GD  RK  L
Sbjct: 300 YCNGVENYSRHLAGRMAGEPPECLIDYFPQDWLLVVDESHVTVPQIRGMYNGDQARKRVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRL S  DNRPL+ EE+       I VSATPG WE+EQ Q  +VEQ+IRPTG+VDP
Sbjct: 360 IDHGFRLLSAADNRPLKAEEFWTKVNQCIFVSATPGDWEIEQSQEQVVEQVIRPTGVVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R    QV+D+  EI   A +  R+L+T LTKRMAEDLTEYL ER IRVRY+HSE+ 
Sbjct: 420 EIFVRPTEGQVDDLLAEIQERASKKERVLVTTLTKRMAEDLTEYLQERGIRVRYLHSEIN 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           ++ERIEI++ LR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR+  SLIQTIGR
Sbjct: 480 SIERIEILQSLREGAFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAARSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V  + ILYAD +T S+  AIDET RRR  QL +N+ H I PQ + +K    I   L
Sbjct: 540 AARHVRGQAILYADNLTDSMAKAIDETERRRGIQLAYNRMHGITPQPIVKKSSNAILAFL 599

Query: 738 LEDAATTN---ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                  +    ++  Q   L  ++    +  L  QM  AA NL FE+AA+ RD+IK L+
Sbjct: 600 DVSRRLNHQQLATVYEQAEDLPLEQIPEVISQLETQMKEAAKNLEFEQAAQYRDKIKHLR 659

Query: 795 SSPYFQ 800
                +
Sbjct: 660 DKLVGR 665


>gi|282851455|ref|ZP_06260820.1| excinuclease ABC, B subunit [Lactobacillus gasseri 224-1]
 gi|282557423|gb|EFB63020.1| excinuclease ABC, B subunit [Lactobacillus gasseri 224-1]
          Length = 643

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/639 (52%), Positives = 443/639 (69%), Gaps = 2/639 (0%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           +  G    EK Q+L G TG+GKTFTMA VI  + +P +V++ NK L  QLY EFK FFP 
Sbjct: 1   MTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVISHNKTLVGQLYGEFKEFFPK 60

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           NAV+YFVSYYDYYQPEAYVP++DTYIEK+SSIN++ID++RH  T  L+ RND IVV+SVS
Sbjct: 61  NAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSINDEIDQLRHKTTSDLMSRNDVIVVASVS 120

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
           CIYG+G    Y+  +V +  G  + +  LL  LV  QY R DI   RG FRV GD +EIF
Sbjct: 121 CIYGLGDPREYAASVVSISEGQEISRDVLLRDLVNIQYDRNDIDFQRGRFRVRGDVVEIF 180

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P+   D A+RV  FG++I+ I E   LTG+ I   E + I+  +H+VT    +  A+  I
Sbjct: 181 PAGYSDHAFRVEFFGDEIDRIVEVNSLTGEVIGEREQVSIFPATHFVTNEQIMQRALASI 240

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
           K+E+ +++ + E EG+LLEAQR++QR TYD+EM+   G    IENYSR++ GR  G+PP 
Sbjct: 241 KDEMNIQVKKFEGEGKLLEAQRIKQRTTYDMEMMSEVGYTNGIENYSRHMEGRKAGQPPH 300

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519
           TL ++ P+D L+ +DESH T+P++  MY GD  RK TL +YGFRLPS +DNRPL+ EE+ 
Sbjct: 301 TLLDFFPDDFLILIDESHATMPELKAMYNGDRARKQTLIDYGFRLPSALDNRPLKLEEFE 360

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
                 + VSATPG +EL Q     VEQIIRPTGL+DP +E+R  + Q++D+  EIN   
Sbjct: 361 KHVNQIMYVSATPGDYELNQT-DHKVEQIIRPTGLLDPEIEVRPIKGQIDDLVGEINKRI 419

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +  R+ +T LTK+MAEDLT+YL +  I+VRY+HS++KTLER+EIIRDLRLGKFDVL+GI
Sbjct: 420 DRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYLHSDIKTLERLEIIRDLRLGKFDVLIGI 479

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           NLLREG+D+PE  LVAILDADKEGFLRS   L+QTIGRAARN N KVI+YAD+IT S++ 
Sbjct: 480 NLLREGIDVPEVSLVAILDADKEGFLRSTRPLVQTIGRAARNSNGKVIMYADSITDSMRE 539

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS-IDAQQLSLSKK 758
           AID T RRR  Q++ NK+H I P+++ + I +VI      D      S  D     L+KK
Sbjct: 540 AIDATERRRSLQMKFNKEHGITPKTIVKPIRDVISITKDSDEKENKESFADLNFDELTKK 599

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + +  +K+L  QM  AA  L+FEEAA +RD I  L+   
Sbjct: 600 QKQTMIKTLTAQMQEAAKKLDFEEAANLRDAIMDLQKQV 638


>gi|301308772|ref|ZP_07214724.1| excinuclease ABC subunit B [Bacteroides sp. 20_3]
 gi|300833296|gb|EFK63914.1| excinuclease ABC subunit B [Bacteroides sp. 20_3]
          Length = 673

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/663 (49%), Positives = 455/663 (68%), Gaps = 9/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA L +GI +    Q LLGVTGSGKTFT+A VI+ +QRP ++++
Sbjct: 3   FEISSSFSPTGDQPEAIAALSEGIKNGVPFQTLLGVTGSGKTFTIANVIKEVQRPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYLPSTDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVVSSVSC+YG+    ++++ +  L+ G  +++ +LL   V   Y  
Sbjct: 123 RATASLLSGRKDVIVVSSVSCLYGMADPTAFAEKVTHLERGMRIDRDKLLRRFVDALYVN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
             +    G FRV GD+++IFP+    + +A+R+  + ++I+ IS F PLTG++    + +
Sbjct: 183 NKLEFKSGCFRVNGDTVDIFPAIETFDGMAYRIEFWDDEIDRISSFNPLTGEEYDEQDEL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + +VT +  +NTA+  I  +L  ++  L++ G+  EA+RL +R+T+DLEM+   G
Sbjct: 243 NIYPTNLFVTTQERINTAIGQIDVDLGTQVNFLKEIGKPFEAKRLYERVTFDLEMIRELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR  G+ P  L +Y P+D +L VDESHVTIPQI  MY GD+ RK  L
Sbjct: 303 HCSGIENYSRYFDGRAAGDRPFCLLDYFPKDFMLVVDESHVTIPQIRAMYGGDYARKKNL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS MDNRPL F+E+  L P  I VSATP  +EL + +G++VEQ+IRPTGL+DP
Sbjct: 363 VEYGFRLPSAMDNRPLTFDEFESLTPLGIYVSATPADYELIKSEGVVVEQVIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R +  Q++D+ +EI   + +  R+L+T LTKRMAE+LT Y+    +R  Y+HS+V 
Sbjct: 423 IIDVRPSLNQIDDLMEEITQRSAKDERVLVTTLTKRMAEELTTYMTRMGVRCNYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++I+ DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERVQIMDDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI- 736
           AARNVN KVI YAD IT S+Q  +DET RRREKQ+ +N+ H I P+ V +  + ++    
Sbjct: 543 AARNVNGKVIFYADKITASMQQTMDETNRRREKQMAYNEAHGITPKQVMKNSVSMLAEKQ 602

Query: 737 -----LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                        ++  D     +++ + +  ++  RKQM  AA  L+F EAA+ RDE+ 
Sbjct: 603 QTAEPYAYIEPEPSLVADPVVQYMNRTQLEKAIERTRKQMTEAAKKLDFIEAAQFRDELV 662

Query: 792 RLK 794
           +L+
Sbjct: 663 KLE 665


>gi|150006946|ref|YP_001301689.1| excinuclease ABC subunit B [Parabacteroides distasonis ATCC 8503]
 gi|255016032|ref|ZP_05288158.1| excinuclease ABC subunit B [Bacteroides sp. 2_1_7]
 gi|256842055|ref|ZP_05547560.1| excinuclease ABC, B subunit [Parabacteroides sp. D13]
 gi|149935370|gb|ABR42067.1| excinuclease ABC, B subunit [Parabacteroides distasonis ATCC 8503]
 gi|256736371|gb|EEU49700.1| excinuclease ABC, B subunit [Parabacteroides sp. D13]
          Length = 673

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/663 (49%), Positives = 455/663 (68%), Gaps = 9/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA L +GI S    Q LLGVTGSGKTFT+A VI+ +QRP ++++
Sbjct: 3   FEISSSFSPTGDQPEAIAALSEGIKSGVPFQTLLGVTGSGKTFTIANVIKEVQRPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLPSTDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVVSSVSC+YG+    ++++ +  L+ G  +++ +LL   V   Y  
Sbjct: 123 RATASLLSGRKDVIVVSSVSCLYGMADPTAFAEKVTHLERGMRIDRDKLLRRFVDALYVN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
             +    G FRV GD+++IFP+    + +A+R+  + ++I+ IS F PLTG++    + +
Sbjct: 183 NKLEFKSGCFRVNGDTVDIFPAIETFDGMAYRIEFWDDEIDRISSFNPLTGEEYDEQDEL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + +VT +  +N A+  I  +L  ++  L++ G+  EA+RL +R+T+DLEM+   G
Sbjct: 243 NIYPTNLFVTTQERINMAIGQIDVDLGTQVNFLKEIGKPFEAKRLYERVTFDLEMIRELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR  G+ P  L +Y P+D LL VDESHVTIPQI  MY GD+ RK  L
Sbjct: 303 HCSGIENYSRYFDGRAAGDRPFCLLDYFPKDFLLVVDESHVTIPQIRAMYGGDYARKKNL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS MDNRPL F+E+  L P  I VSATP  +EL + +G++VEQ+IRPTGL+DP
Sbjct: 363 VEYGFRLPSAMDNRPLTFDEFESLTPLGIYVSATPADYELIKSEGVVVEQVIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R +  Q++D+ +EI   + +  R+L+T LTKRMAE+LT Y+    +R  Y+HS+V 
Sbjct: 423 IIDVRPSLNQIDDLMEEITQRSAKDERVLVTTLTKRMAEELTTYMTRMGVRCNYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++I+ DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERVQIMDDLRNGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI- 736
           AARNVN KVI YAD IT S+Q  +DET RRREKQ+ +N+ H I P+ V +  + ++    
Sbjct: 543 AARNVNGKVIFYADKITASMQQTMDETNRRREKQMAYNEAHGITPKQVMKNSVSMLAEKQ 602

Query: 737 -----LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                        ++  D     +++ + +  ++  RKQM  AA  L+F EAA+ RDE+ 
Sbjct: 603 QTAEPYAYIEPEPSLVADPVVQYMNRTQLEKAIERTRKQMTEAAKKLDFIEAAQFRDELV 662

Query: 792 RLK 794
           +L+
Sbjct: 663 KLE 665


>gi|182439351|ref|YP_001827070.1| excinuclease ABC subunit B [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326780007|ref|ZP_08239272.1| UvrABC system protein B [Streptomyces cf. griseus XylebKG-1]
 gi|178467867|dbj|BAG22387.1| putative excinuclease ABC subunit B [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326660340|gb|EGE45186.1| UvrABC system protein B [Streptomyces cf. griseus XylebKG-1]
          Length = 709

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/701 (50%), Positives = 480/701 (68%), Gaps = 34/701 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++   + +  F++ + Y PSGDQPAAIA+L + I + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVSKIERSVRPFEVVSPYQPSGDQPAAIAELERRIRADEKDVVLLGATGTGKSATTAWM 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSINE+++R+RHSAT SLL R D +VV+SVSCIYG+G+ + Y   +VQLK+G+ +++ +L
Sbjct: 122 SSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVQLKVGEEIDRDQL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V+ QY R D+   RGTFRV GD+IEIFP + E++A R+ MFG++IE +S  +PLTG
Sbjct: 182 LRRFVEMQYTRNDLAFTRGTFRVRGDTIEIFPVY-EELAVRIEMFGDEIENLSTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I    T+ ++  SHYV     +  A+  I+ EL+ RL ELEK+G++LEAQRL  R TY
Sbjct: 241 EIISEDPTVHVFPASHYVAGPERMEKAVGGIERELEERLAELEKQGKMLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EML   G+C  +ENYS +   R PG  P TL +Y P+D LL +DESHVT+PQI  MY 
Sbjct: 301 DIEMLRQIGTCSGVENYSMHFDDRAPGTAPNTLLDYFPDDFLLVLDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS MDNRPL++EE+      T+ +SATPG +EL +  G  VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSAMDNRPLKWEEFLKRIDQTVYLSATPGKYELSRGDG-FVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+  EI    ++  R+L+T LTK+M+EDLT+Y  E  I+
Sbjct: 420 IRPTGLVDPEVVVKPTEGQIDDLVHEIRERVERDERVLVTTLTKKMSEDLTDYFLELGIQ 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           VRY+HS+V TL RIE++R+LR G++DVLVGINLLREGLD+PE  LVAILDADK+GFLRS 
Sbjct: 480 VRYLHSDVDTLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSG 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD IT ++  AIDET RRREKQ+ +N +  I+PQ +++K
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADKITPAMAQAIDETNRRREKQIAYNTERGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKK------------------------------ 758
           I +++  I  E+  T  +     +     K                              
Sbjct: 600 INDIVATIAREEVDTEQLLGTGYRQGKETKAPVPALGSKAAKGGAKGKAAKPGAVVGDRP 659

Query: 759 --KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             +    ++ + ++M  AA +L FE AAR+RDE+  LK   
Sbjct: 660 ATELAGIIEEMTERMRAAAADLQFEVAARLRDEVGELKKEL 700


>gi|218283136|ref|ZP_03489215.1| hypothetical protein EUBIFOR_01801 [Eubacterium biforme DSM 3989]
 gi|218216085|gb|EEC89623.1| hypothetical protein EUBIFOR_01801 [Eubacterium biforme DSM 3989]
          Length = 657

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/656 (52%), Positives = 451/656 (68%), Gaps = 4/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y PSGDQP AI +L+ G+   +K Q+LLG TG+GKTFT++ VI  + RP +V A
Sbjct: 5   FELVSEYKPSGDQPEAIKELVSGLKEDKKFQVLLGATGTGKTFTISNVIAQVNRPTLVFA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFPHN VEYFVSY+DYYQPEAY+P+TDTYI+K +  NE++D +R 
Sbjct: 65  HNKTLAGQLYSEFKEFFPHNRVEYFVSYFDYYQPEAYLPKTDTYIDKNTKTNEELDMLRM 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +A  S+LER D I+V+SV+ IYG  + E Y  MI  L+ G  +E+ EL+ +LV QQYKR 
Sbjct: 125 AAVNSVLERRDTIIVASVASIYGASNPEQYRHMIFTLRTGQIIERNELMLALVHQQYKRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D   +RGTFRV GD IEI P H +    R+ MF +++E I E  P+TG   ++ +   IY
Sbjct: 185 DTDPLRGTFRVRGDVIEITPGHTDRYLIRIEMFDDEVERICEVDPVTGHVNQSYQLYIIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y T    +N A   I+EEL  RL   +++G+ LE +RLEQR  YD+E L   G C 
Sbjct: 245 PANGYATSMDIINHAADTIQEELDERLAYFDEQGKPLEKERLEQRCRYDIEALREFGVCP 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PGE P TLF+Y P+D LL VDESHV++PQI GMY GD  RK  L +Y
Sbjct: 305 GIENYSRHIDGRKPGERPYTLFDYFPDDFLLVVDESHVSLPQIRGMYNGDRARKQVLVDY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF E+  L    I VSATPG +EL+Q  G IVEQIIRPTGL+DP VE
Sbjct: 365 GFRLPSALDNRPLRFNEFEGLIKNAIFVSATPGDYELDQTHGEIVEQIIRPTGLLDPEVE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++D+ DEI    ++  R L+T LT RMAEDLT YL   +++V ++H EV T+E
Sbjct: 425 VRPIEGQIDDLVDEIKERIERHERTLITTLTVRMAEDLTSYLKNMDLKVAWLHHEVTTIE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EII DLR GK+DVLVGINLLREGLDIPE  L+AILDADKEGFLRS+ SLIQ IGRAAR
Sbjct: 485 RTEIIHDLRQGKYDVLVGINLLREGLDIPEVSLIAILDADKEGFLRSRRSLIQIIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVI+YAD IT+S+Q A+DET RRR  Q+E+N+KH I P+++ + I +V+     ++
Sbjct: 545 NAKGKVIMYADKITESMQEAMDETARRRSIQMEYNEKHGIVPKTIIKPIHDVVRSKETKE 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            A   +              +  +K L ++M  AA  L+FE AA++RD +  +K  
Sbjct: 605 MAAKYLKKKKLPAKQ----KEKMIKELEQEMKEAARTLDFERAAQLRDILFEMKGE 656


>gi|32475348|ref|NP_868342.1| excinuclease ABC subunit B [Rhodopirellula baltica SH 1]
 gi|81835216|sp|Q7UFR2|UVRB_RHOBA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|32445889|emb|CAD78620.1| excinuclease ABC subunit B [Rhodopirellula baltica SH 1]
 gi|327537770|gb|EGF24475.1| UvrABC system protein B [Rhodopirellula baltica WH47]
          Length = 708

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/657 (52%), Positives = 471/657 (71%), Gaps = 4/657 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F +   + PSGDQPAAIA+L++GI S +  Q LLG TG+GKT+TMA VI ++QRPA++
Sbjct: 9   AAFDLHQPFPPSGDQPAAIAKLIEGIQSGKTAQTLLGATGTGKTYTMANVIASVQRPALI 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           ++ NK LAAQLY EFK FFP+NAV YFVSYYDYYQPEAY+P+ D YIEK+SSINE+IDR+
Sbjct: 69  LSHNKTLAAQLYGEFKEFFPNNAVHYFVSYYDYYQPEAYIPQRDVYIEKDSSINEEIDRL 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R + T SL+ R D ++V+SVS IYG+GS + Y Q++V L  G+   +  LL   V  QY+
Sbjct: 129 RLATTSSLVSRRDVVIVASVSSIYGLGSPDDYRQLVVDLHQGEQTRRDHLLLKFVDLQYQ 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RG FRV GDSIE++PS+ E+ A+R+ M+G++IE+IS   P +G+ I+ VE + 
Sbjct: 189 RNDIQFERGKFRVRGDSIELWPSY-EEFAYRIEMWGDEIEKISLIKPTSGETIKTVEHLY 247

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY   H+V P   +  A++ ++EEL  +L   + +G+LLEAQRL  R  +DLEML   G 
Sbjct: 248 IYPCKHFVMPEDRIQRAIRLLREELTQQLEIFQSQGKLLEAQRLSARTKFDLEMLAEVGH 307

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR L+G+ PG  P TL+++ P+D + FVDESHVT+PQ+  MY GD  RK TL 
Sbjct: 308 CPGIENYSRPLSGKEPGATPDTLYDFFPKDFITFVDESHVTVPQVRAMYAGDRSRKITLV 367

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLP  +DNRPL+F+EW         VSATP  +ELE+  G +VEQIIRPTGL+DP 
Sbjct: 368 EHGFRLPCALDNRPLKFDEWEERTGQICFVSATPSDYELERTGGEVVEQIIRPTGLLDPE 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VEI SAR QV  + +++ + A++  R+L+T LTKR+AEDL  Y  E+ ++ R++HSE+  
Sbjct: 428 VEIVSARGQVTHLLEQVRIRAERDERVLVTALTKRLAEDLATYFQEQGVKCRWLHSELNA 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER++++++LR G+FD LVG+NLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRA
Sbjct: 488 FERVDLLQELRAGQFDCLVGVNLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN NS+VILYAD +T S+Q+AIDET RRR  Q+E+N KH I P++V++ I + ID    
Sbjct: 548 ARNANSRVILYADKVTDSMQMAIDETERRRVIQMEYNAKHGIVPKTVRKSIRKGIDTEAA 607

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               +T  + D+ +      +   ++  L ++M  AA++L FE AAR+RD + +LK 
Sbjct: 608 NHKESTRKAQDSGEAIYITIE---YVDKLEQEMLAAAEDLEFERAARLRDRVLQLKE 661


>gi|298377371|ref|ZP_06987324.1| excinuclease ABC subunit B [Bacteroides sp. 3_1_19]
 gi|298265785|gb|EFI07445.1| excinuclease ABC subunit B [Bacteroides sp. 3_1_19]
          Length = 673

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/663 (49%), Positives = 455/663 (68%), Gaps = 9/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA L +GI S    Q LLGVTGSGKTFT+A VI+ +QRP ++++
Sbjct: 3   FEISSSFSPTGDQPEAIAALSEGIKSGVPFQTLLGVTGSGKTFTIANVIKEVQRPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLPSTDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVVSSVSC+YG+    ++++ +  L+ G  +++ +LL   V   Y  
Sbjct: 123 RATASLLSGRKDVIVVSSVSCLYGMADPTAFAEKVTHLERGMRIDRDKLLRRFVDALYVN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
             +    G FRV GD+++IFP+    + +A+R+  + ++I+ IS F PLTG++    + +
Sbjct: 183 NKLEFKSGCFRVNGDTVDIFPAIETFDGMAYRIEFWDDEIDRISSFNPLTGEEYDEQDEL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + +VT +  +N A+  I  +L  ++  L++ G+  EA+RL +R+T+DLEM+   G
Sbjct: 243 NIYPTNLFVTTQERINMAIGQIDVDLGTQVNFLKEIGKPFEAKRLYERVTFDLEMIRELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR  G+ P  L +Y P+D LL VDESHVTIPQI  MY GD+ RK  L
Sbjct: 303 HCSGIENYSRYFDGRAAGDRPFCLLDYFPKDFLLVVDESHVTIPQIRAMYGGDYARKKNL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS MDNRPL F+E+  L P  I VSATP  +EL + +G++VEQ+IRPTGL+DP
Sbjct: 363 VEYGFRLPSAMDNRPLTFDEFESLTPLGIYVSATPADYELIKSEGVVVEQVIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R +  Q++D+ +EI   + +  R+L+T LTKRMAE+LT Y+    +R  Y+HS+V 
Sbjct: 423 IIDVRPSLNQIDDLMEEITQRSAKDERVLVTTLTKRMAEELTTYMTRMGVRCNYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++I+ DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERVQIMDDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI- 736
           AARNVN KVI YAD IT S+Q  +DET RRREKQ+ +N+ H I P+ V +  + ++    
Sbjct: 543 AARNVNGKVIFYADKITASMQQTMDETNRRREKQMAYNEAHGITPKQVMKNSVSMLAEKQ 602

Query: 737 -----LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                        ++  D     +++ + +  ++  RKQM  AA  L+F EAA+ RDE+ 
Sbjct: 603 QTAEPYAYIEPEPSLVADPVVQYMNRTQLEKAIERTRKQMTEAAKKLDFIEAAQFRDELV 662

Query: 792 RLK 794
           +L+
Sbjct: 663 KLE 665


>gi|169351518|ref|ZP_02868456.1| hypothetical protein CLOSPI_02298 [Clostridium spiroforme DSM 1552]
 gi|169291740|gb|EDS73873.1| hypothetical protein CLOSPI_02298 [Clostridium spiroforme DSM 1552]
          Length = 657

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/659 (51%), Positives = 452/659 (68%), Gaps = 3/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + P GDQ  AI +L+ G+ + +K Q+LLG TG+GKTFT++ VI A+ +P +
Sbjct: 1   MHQFKLVSPFKPMGDQIEAIDKLVAGVKAGKKEQVLLGGTGTGKTFTVSNVIAAVNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LA QLYSE K FFP N VEYF+S +D+YQPEAY+P  D YI+K +  N +I+ 
Sbjct: 61  VLAHNKTLAGQLYSELKEFFPENRVEYFISNFDFYQPEAYIPGRDLYIDKNAKTNYEIEM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R +A  SL+ER D IVV+SV+ IYG+G+ E Y +MI  L++G  +++KELL+ LV +QY
Sbjct: 121 LRSAAMNSLIEREDVIVVASVASIYGLGNPEQYKEMIFALRVGQDIDRKELLTYLVDRQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   +GTFRV GD IEI P H E+   R+ +FG+ +E I+E  PLTG  +    T 
Sbjct: 181 QRNDIEQTKGTFRVRGDVIEIVPGHTENWLIRIELFGDTVERITEVDPLTGHVLGAYNTY 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY    YVT +  +  A   I +EL+ RL E   E +LLE +RL+QR  +D+EML   G
Sbjct: 241 TIYPAYGYVTKKEQILKACDTITKELEERLKEFRDETKLLEYERLDQRTRHDVEMLREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR++ GR  G+ P TL +Y P+D L+ VDESHV +PQ+ GMY GD  RK TL
Sbjct: 301 MCPGIENYSRHIDGRKEGQRPYTLIDYFPKDFLMIVDESHVMLPQVRGMYNGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPLRFEE+  +    I VSATPG +ELE     +VEQIIRPTGL+DP
Sbjct: 361 VEYGFRLPSALDNRPLRFEEFEKIINQVIYVSATPGDYELEHVNNEVVEQIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    Q++D+  EI +  ++  R+L+T LTKRMAEDL+ YL E  I+V Y+HS+ K
Sbjct: 421 KIEVRPTANQIDDIISEIKMRQEKNERVLITTLTKRMAEDLSAYLKELGIKVAYLHSDTK 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EI+RDLR+GK+DVLVGINLLREGLD+PE  LV ILDADKEGFLRS  SLIQTIGR
Sbjct: 481 TLERTEILRDLRIGKYDVLVGINLLREGLDLPEVSLVCILDADKEGFLRSNRSLIQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N +VI+Y D IT S+  AI+ET RRR+ Q  +NK+HNI P ++ ++I + I    
Sbjct: 541 AARNSNGEVIMYGDKITDSMAYAIEETNRRRKIQDAYNKEHNIIPTTIHKEIRDAIRGQE 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + D A + +    +    SKK  +A +  L KQM  AA  L+FE A  +RD I  L+  
Sbjct: 601 VIDDAASLVKKGRKA---SKKDKQAMIHELEKQMKDAAKVLDFERAMELRDIIMELQGE 656


>gi|262384314|ref|ZP_06077449.1| excinuclease ABC, B subunit [Bacteroides sp. 2_1_33B]
 gi|262294017|gb|EEY81950.1| excinuclease ABC, B subunit [Bacteroides sp. 2_1_33B]
          Length = 673

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/663 (49%), Positives = 455/663 (68%), Gaps = 9/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA L +GI S    Q LLGVTGSGKTFT+A VI+ +QRP ++++
Sbjct: 3   FEISSSFSPTGDQPEAIAALSEGIKSGVPFQTLLGVTGSGKTFTIANVIKEVQRPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLPSTDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVVSSVSC+YG+    ++++ +  L+ G  +++ +LL   V   Y  
Sbjct: 123 RATASLLSGRKDVIVVSSVSCLYGMADPTAFAEKVTHLERGMRIDRDKLLRRFVDALYVN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
             +    G FRV GD+++IFP+    + +A+R+  + ++I+ IS F PLTG++    + +
Sbjct: 183 NKLEFKSGCFRVNGDTVDIFPAIETFDGMAYRIEFWDDEIDRISSFNPLTGEEYDEQDEL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + +VT +  +N A+  I  +L  ++  L++ G+  EA+RL +R+T+DLEM+   G
Sbjct: 243 NIYPTNLFVTTQDRINMAIGQIDVDLGTQVNLLKEIGKPFEAKRLYERVTFDLEMIRELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR  G+ P  L +Y P+D +L VDESHVTIPQI  MY GD+ RK  L
Sbjct: 303 HCSGIENYSRYFDGRAAGDRPFCLLDYFPKDFMLVVDESHVTIPQIRAMYGGDYARKKNL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS MDNRPL F+E+  L P  I VSATP  +EL + +G++VEQ+IRPTGL+DP
Sbjct: 363 VEYGFRLPSAMDNRPLTFDEFESLTPLGIYVSATPADYELIKSEGVVVEQVIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +++R +  Q++D+ +EI   + +  R+L+T LTKRMAE+LT Y+    +R  Y+HS+V 
Sbjct: 423 IIDVRPSLNQIDDLMEEITQRSAKNERVLVTTLTKRMAEELTTYMTRMGVRCNYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++I+ DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERVQIMDDLRNGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI- 736
           AARNVN KVI YAD IT S++  +DET RRREKQ+ +N+ H I P+ V +  + ++    
Sbjct: 543 AARNVNGKVIFYADKITASMRQTMDETNRRREKQMAYNEAHGITPKQVMKNSVSMLAEKQ 602

Query: 737 -----LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
                        ++  D     +++ + +  ++  RKQM  AA  L+F EAA+ RDE+ 
Sbjct: 603 QTAEPYAYIEPEPSLVADPVVQYMNRTQLEKAIERTRKQMTEAAKKLDFIEAAQFRDELV 662

Query: 792 RLK 794
           +L+
Sbjct: 663 KLE 665


>gi|300088152|ref|YP_003758674.1| excinuclease ABC subunit B [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527885|gb|ADJ26353.1| excinuclease ABC, B subunit [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 674

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/663 (51%), Positives = 462/663 (69%), Gaps = 4/663 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T FQ+ +D+   GDQP A+  L +G+    + Q LLGVTGSGKTFTMA +I    RPA+
Sbjct: 1   MTDFQLVSDFGLMGDQPQAVDALTRGLDEGLRDQTLLGVTGSGKTFTMANIIARTGRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY+EF+ FFPHN+VEYFVSYYDYYQPEAYVP  D YIEKES IN++ID+
Sbjct: 61  VISHNKTLAAQLYAEFREFFPHNSVEYFVSYYDYYQPEAYVPSRDMYIEKESDINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+ATR+LL R D I+V+SVSCIYG+G  E Y + I+ L+ G S  + E++  LV  QY
Sbjct: 121 LRHAATRALLSRRDVIIVASVSCIYGLGEPEEYMRFILNLEKGVSYRRDEIVRKLVDMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RG FR+ GD++E+ P++ E+ A RV  FG++IE I    PLTG+ + ++  I
Sbjct: 181 ERNDMDFTRGKFRLRGDTLELRPAY-EETAIRVEFFGDEIERILRIDPLTGEFLEDIRII 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VT    L  A++ I++EL      L+++G+LLEA RLEQR  YDLEMLE  G
Sbjct: 240 DIYPAKHFVTSPEKLAKALQGIRDELAQHTAMLKEQGKLLEAARLEQRTNYDLEMLENAG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L  R  G  P TL +Y PED +LFVDESH+++PQI GMY GD  RK TL
Sbjct: 300 YCSGVENYSRHLALRPAGSTPWTLLDYFPEDFILFVDESHMSLPQIRGMYNGDRARKETL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL F E+       + VSATPG +E E      VEQ++RPTGL++P
Sbjct: 360 VDYGFRLPSALDNRPLNFSEFRQRVGQAVYVSATPGPYEREHSAQ-TVEQVVRPTGLLEP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E++    Q++D+ ++I L   +G R L+T LTK++AE L EY+ E  ++ +Y+HSEV+
Sbjct: 419 IIEVKPTTGQIDDLLEQIKLRVARGERCLVTTLTKKLAEKLAEYITEAGVKTQYLHSEVE 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T ER+EI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEGFLRS+ +LIQT+GR
Sbjct: 479 TFERVEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSEWALIQTMGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V+ +VI+YADTIT S++ AI E  RRRE Q  +N++H I PQ +++ I ++ + + 
Sbjct: 539 AARHVDGRVIMYADTITGSMERAIAEVKRRREIQEAYNQEHGITPQGIRKAIKDITERVR 598

Query: 738 LEDAATTNISIDAQQLSL--SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             ++A    S      S+  SK++    ++ L  QM  +A  ++FE AA +RD I  LK 
Sbjct: 599 TAESAVVAESDADSYKSMALSKEELARLIRELETQMKKSAKLMDFERAALLRDRIIELKR 658

Query: 796 SPY 798
              
Sbjct: 659 ELV 661


>gi|298244892|ref|ZP_06968698.1| excinuclease ABC, B subunit [Ktedonobacter racemifer DSM 44963]
 gi|297552373|gb|EFH86238.1| excinuclease ABC, B subunit [Ktedonobacter racemifer DSM 44963]
          Length = 662

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/659 (53%), Positives = 480/659 (72%), Gaps = 4/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++++ + P+GDQP AI +L +GI + ++ Q LLGVTGSGKT+T+AKVIE +Q+P +
Sbjct: 1   MPDFKVESPFEPTGDQPQAIVELAEGIRNNQRFQTLLGVTGSGKTYTVAKVIEQVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLYSE+K FFP+NAVEYFVSYYDYYQPEAY+ RTDTY+EKES +NE+I++
Sbjct: 61  VLAPNKTLAAQLYSEYKEFFPNNAVEYFVSYYDYYQPEAYIARTDTYVEKESMLNEEIEK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SATRSL ER D ++V+SVSCIYG+GS E Y ++++ LK+G+   + ++L  L   QY
Sbjct: 121 LRLSATRSLFERRDVLIVASVSCIYGLGSPEEYGEVVLTLKVGEERRRDKILRHLNSIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D   +RG FRV GD +EIFP++ EDVA RV  FG++IE ++E  PLTG+ +     +
Sbjct: 181 ERNDANFVRGRFRVRGDVLEIFPAY-EDVAVRVEFFGDEIERMTEIDPLTGEVLGQRTRL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VT +  LN ++  I+EEL+ RL ELE EG+LLE  RL+QR  +D+EML  TG
Sbjct: 240 DIYPAKHWVTTQERLNKSISLIEEELEQRLEELEAEGKLLEHARLKQRTNFDIEMLRETG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  GE P TL +Y+PE+ LL VDESH+++PQ+ GM+ GD  RK  L
Sbjct: 300 ICSGVENYSRHLAGRAAGEQPWTLLDYLPENFLLVVDESHISLPQVRGMFAGDRSRKQIL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL F E+       I VSATPG +E E  Q  IVEQIIRPTGL+DP
Sbjct: 360 VDYGFRLPSALDNRPLTFPEFEHKLKQAIFVSATPGPYEYEHSQA-IVEQIIRPTGLIDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + +R  R Q++D+  EI +  ++G R+L+T LTK+MAEDL +Y+ E +I+V Y+HSE+ 
Sbjct: 419 EITVRPTRGQIDDLIAEIRIRVEKGQRVLVTTLTKKMAEDLADYMQELSIKVHYLHSEID 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQT+GR
Sbjct: 479 TIERVEILRDLRLGVYDVVVGINLLREGLDLPEVSLVAILDADKEGFLRSEGSLIQTVGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V   VI+YAD +T+S++ AIDET RRR+ Q  +N++HNI P+ +K+++  + + + 
Sbjct: 539 AARHVEGSVIMYADNVTRSMRRAIDETNRRRKIQEGYNEQHNITPRGIKKEVKTLSERLK 598

Query: 738 --LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                 A  +         + K +    +K L  QM  AA  L FE+A ++RD+I  ++
Sbjct: 599 AMAGPEAGADGKTATAVAGIPKDEALRLIKDLESQMRSAAKQLEFEKAGQLRDQIIEIR 657


>gi|281423195|ref|ZP_06254108.1| excinuclease ABC subunit B [Prevotella oris F0302]
 gi|281402531|gb|EFB33362.1| excinuclease ABC subunit B [Prevotella oris F0302]
          Length = 682

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/677 (48%), Positives = 457/677 (67%), Gaps = 21/677 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL +GI      Q+LLGVTGSGKTFT+A VI    +P ++++
Sbjct: 3   FKLTSKYSPTGDQPEAIEQLTEGIKEGAPAQVLLGVTGSGKTFTVANVIANANKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPNNAVEYYVSYYDYYQPEAYLPTSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            A  +LL  R D IVVSSVSCIYG+G   +  + I+++K G ++++ E L  LV   Y R
Sbjct: 123 GAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQESIIKIKRGQTLDRNEFLRKLVDALYIR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RGTFRV GD+++I  ++ +++  RV+ + ++I+ I E    T   + + ET +I
Sbjct: 183 NDIDLQRGTFRVKGDTVDISMAYSDNI-LRVTWWDDEIDCIEEVDSATFHSLEHFETYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A+  I+++L  R+      G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTERAICMIQDDLTERVEYFNSIGDNIKAQRVKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PGE P  L ++ P+D L+ +DESHV++PQI+ MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRQPGERPYCLLDFFPKDYLMVIDESHVSVPQINAMYGGDRARKQNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE++ L    I VSATP  +E+E+ +G+IVEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLRFEEFHSLINQIIYVSATPAKYEIEEAEGVIVEQIIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ DEI     +  R+L+T LTKRMAE+LTEYL    I+  Y+HS+V TL
Sbjct: 422 EVRPSENQIDDLMDEILTRIHRQERVLVTTLTKRMAEELTEYLLNHEIKANYIHSDVATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIMNDLRAGVFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI+YADTIT+S+Q  IDET RRR  QL++N+ H+I P+ +K++I   +  + +E
Sbjct: 542 RNVNGKVIMYADTITESMQKTIDETARRRSIQLKYNEVHHITPKQIKKQIGSSLASLSVE 601

Query: 740 DAATTNI-------------------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
                +                    + D     +SK + +  + +    M  AA +L+F
Sbjct: 602 SNDRKDAVIQNGKYPGIYLEPESGAFAADPIVKRMSKAELEKSIANTTALMKQAAKDLDF 661

Query: 781 EEAARIRDEIKRLKSSP 797
            +AA+ RDEI RL+   
Sbjct: 662 IQAAQYRDEIIRLQEQL 678


>gi|270307809|ref|YP_003329867.1| excinuclease ABC, B subunit [Dehalococcoides sp. VS]
 gi|270153701|gb|ACZ61539.1| excinuclease ABC, B subunit [Dehalococcoides sp. VS]
          Length = 668

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/660 (50%), Positives = 461/660 (69%), Gaps = 4/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +D+  +GDQP A+ +L +G+      Q LLGVTGSGKTFTMA VI  + RP +
Sbjct: 1   MPDFKIVSDFALTGDQPQAVEKLSEGLAHGLTDQTLLGVTGSGKTFTMANVIARVNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLYSE K F P N+VEYFVSYYDYYQPEAYVP+ D YIEK++ INE+ID+
Sbjct: 61  IISHNKTLAAQLYSEMKEFLPENSVEYFVSYYDYYQPEAYVPQKDMYIEKDADINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+ATR+L ER D ++V+SVSCIYG+G  E Y   ++ LK G S+ +  LL  LV  QY
Sbjct: 121 LRHAATRALFERRDVVIVASVSCIYGLGEPEEYRSFVLPLKKGQSLRRDLLLRRLVDMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RG FR+ GD++EI P++ E++A RV  FG++IE I    P++G+ + +++ I
Sbjct: 181 ERNDIDFSRGKFRLRGDTLEIQPAY-EELALRVEFFGDEIERIVSLDPVSGELLADIDEI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VT    +  A+K I+ EL+ RL ELE EG++LE  RL+QR  YDLEM++  G
Sbjct: 240 NIYPAKHFVTSAEKMAEAIKGIQAELEDRLKELEAEGKMLETARLKQRTNYDLEMMQQAG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  G  P TL +Y PED LL VDESH+++PQI GMY GD  RK TL
Sbjct: 300 YCSGVENYSRHLAGRKAGSAPWTLLDYFPEDFLLIVDESHMSLPQIRGMYAGDAARKKTL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS MDNRPL F+E+      +I VSATPG +E E  Q  +VEQ++RPTGL++P
Sbjct: 360 VDYGFRLPSAMDNRPLSFDEFKARVKQSIYVSATPGPYEKEHSQQ-VVEQLVRPTGLLEP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++    Q++D+ +E+     +  R+L+T LTK+M+E L +YL E  I+  Y+HSEV 
Sbjct: 419 VITVKPTGGQIDDLLEEVKKRVDKKERVLITTLTKKMSEKLADYLVEMGIKTHYLHSEVD 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+EI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS+ +LIQT+GR
Sbjct: 479 TLERVEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V+ +VI+YAD IT S+Q A+DE +RRR+ Q ++N+ HNI PQ +++ I ++ + I 
Sbjct: 539 AARHVDGQVIMYADKITGSMQRAMDEISRRRKIQEDYNRLHNITPQGIRKAIKDINERIR 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
              A  +            ++     +K L  QM  AA NL FE AA IRD +  L+++ 
Sbjct: 599 SVTAEVSGPEFRPAPTL--REDIVRLIKELESQMKKAAKNLEFERAALIRDRVVELRAAL 656


>gi|16331511|ref|NP_442239.1| excinuclease ABC subunit B [Synechocystis sp. PCC 6803]
 gi|3123003|sp|Q55170|UVRB_SYNY3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|1001167|dbj|BAA10309.1| excinuclease ABC subunit B [Synechocystis sp. PCC 6803]
          Length = 669

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/664 (50%), Positives = 451/664 (67%), Gaps = 6/664 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +   + P+GDQP AIA L++ +    K Q LLG TG+GKTFTMA VI  + RP +V+
Sbjct: 5   LFSLHAPFRPTGDQPTAIASLIESLQGEHKFQTLLGATGTGKTFTMASVIAELGRPTLVL 64

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQL +E + FFP NAVEYF+SYYDYYQPEAY+P TDTYIEK +SIN++ID +R
Sbjct: 65  AHNKTLAAQLCNELRQFFPENAVEYFISYYDYYQPEAYIPVTDTYIEKTASINDEIDMLR 124

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSATRSL ER D IVV+S+SCIYG+G    Y +  V L++G   + + ++  LV  QY R
Sbjct: 125 HSATRSLFERRDVIVVASISCIYGLGIPSQYLKAAVPLQVGAEYDPRLVIRDLVNVQYSR 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ + RG FR+ GD +EI P++ ED   R+  FG+++E +    P++G+ +++++ I I
Sbjct: 185 NDVELQRGRFRLKGDVLEIVPAY-EDRVIRIEFFGDEVEALRLIDPVSGEILQSLDRISI 243

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y   H+VTP  TL  A + I+ E++ ++  LEK   L+EAQRL QR  YDLEML   G C
Sbjct: 244 YPARHFVTPEETLEKACQQIQTEMEQQVAFLEKNNLLVEAQRLSQRTRYDLEMLREVGYC 303

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +ENYSRYL  R  GEPP  L +Y PED LL +DESHVTIPQ+ GMY GD  RK  L +
Sbjct: 304 NGVENYSRYLADRQAGEPPECLVDYFPEDWLLVIDESHVTIPQLRGMYNGDQARKKVLID 363

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS  DNRPL+ EE+       + VSATPG WE+EQ +  ++EQ+IRPTG++DP +
Sbjct: 364 HGFRLPSAADNRPLKAEEFWQKVKQCVFVSATPGVWEIEQSEARVIEQVIRPTGVLDPEI 423

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R    QV+D+Y EI    +   R+L+T LTKRMAEDLT+Y  ER I+V+Y+HSE++++
Sbjct: 424 FVRPTTGQVDDLYGEIQTRVKLKERVLITTLTKRMAEDLTDYFSERGIKVQYLHSEIQSI 483

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +RIEI++ LR G+FDVL+G+NLLREGLD+PE  LVAI+DADKEGFLR++ SLIQTIGRAA
Sbjct: 484 QRIEILQALRDGEFDVLIGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGRAA 543

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE----KIMEVIDP 735
           R++  + ILYAD  T S+Q AI ET RRR+ Q E+N+KH I PQ + +     I++ +D 
Sbjct: 544 RHIRGQAILYADNFTDSMQKAIAETERRRKIQQEYNEKHGITPQPINKRANNAILQFLDI 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               ++       + Q   L  +K    ++ L ++M  AA    FE AA  RD I+ L+ 
Sbjct: 604 SRRLNSQQLEEVYE-QAQDLPLEKIPDLIQQLEEKMQEAAKKQEFEVAAIYRDRIQHLRD 662

Query: 796 SPYF 799
               
Sbjct: 663 RLLG 666


>gi|15678470|ref|NP_275585.1| excinuclease ABC subunit B [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|3122998|sp|O26542|UVRB_METTH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|2621508|gb|AAB84948.1| excinuclease ABC subunit B [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 646

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/659 (54%), Positives = 468/659 (71%), Gaps = 13/659 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +DY P GDQP AI  L+ GI +  + Q LLGVTGSGKTFT+A VI  +Q+P +
Sbjct: 1   MMKFKLVSDYRPLGDQPKAIRSLVNGIKAGMREQTLLGVTGSGKTFTVANVIAEVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EF+ FFP NAVEYFVSYYD+YQPEAY+P+TDTYI+KE+SIN++IDR
Sbjct: 61  VISHNKTLAAQLYEEFREFFPENAVEYFVSYYDFYQPEAYIPQTDTYIDKEASINDEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSAT+SLL R+D IVVSSVSCIYGIG+   Y +  + L++G    ++E+L  L+  QY
Sbjct: 121 MRHSATQSLLSRDDVIVVSSVSCIYGIGAPTDYGEFTLHLEVGSGPGREEVLEGLINMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+   RG FRV GD++EI P H      R+  FG++I+ IS  + +TG++I+ ++ +
Sbjct: 181 ERNDVEFDRGQFRVRGDTVEINPIHGTP-PIRIEFFGDEIDSISTVHRVTGRRIQKLDRV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+   H+V P   L  A++ I+ EL+ RL EL  + +LLEAQRLEQR  +D+EML   G
Sbjct: 240 TIFPAKHFVIPEDRLQRAIESIEAELEERLTELRSQNKLLEAQRLEQRTRFDMEMLREMG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            CQ IENYS +L+GR  GE P TL +Y PED L  +DESHVT+PQI GMY GD  RK TL
Sbjct: 300 YCQGIENYSMHLSGRKWGEKPNTLLDYFPEDFLTVIDESHVTVPQIRGMYNGDRARKDTL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  +NRPLRF+E+       I VSATPG +EL + Q  IVEQIIRPTGLVDP
Sbjct: 360 VEYGFRLPSARENRPLRFDEFQESVNQVIYVSATPGRYELSRSQN-IVEQIIRPTGLVDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V IR  + QV+D+  EI    ++G R+L+T LTKRMAEDLT+Y     ++VRY+HSE+ 
Sbjct: 419 EVRIRPVKGQVDDLLSEIRRRVERGERVLVTTLTKRMAEDLTDYYSRVGVKVRYLHSEID 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+EII DLR G+FD LVG+NLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 479 TLERVEIIDDLRRGEFDCLVGVNLLREGLDLPEVALVAILDADKEGFLRSETSLIQTIGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN +V++YA   T S+  A++ T RRR+ Q+E+N++H I P+S +  + E      
Sbjct: 539 AARNVNGEVLIYAGRFTDSVMAAVETTNRRRKLQMEYNRRHGIKPRSTRRTLRE------ 592

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            E+    N+ +D     +   + +  +K L  +M  AA NL FE AARIRD I  LKS+
Sbjct: 593 -EEGPLRNLKVD----EIPDHELELIIKDLEAEMRDAARNLEFERAARIRDRIMSLKSN 646


>gi|89890826|ref|ZP_01202335.1| UvrABC excinuclease ABC subunit B (helicase subunit of the DNA
           excision repair complex) [Flavobacteria bacterium BBFL7]
 gi|89516971|gb|EAS19629.1| UvrABC excinuclease ABC subunit B (helicase subunit of the DNA
           excision repair complex) [Flavobacteria bacterium BBFL7]
          Length = 666

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/662 (50%), Positives = 461/662 (69%), Gaps = 6/662 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+++ P+GDQP AI  L+ GI++ ++ Q LLGVTGSGKTFT A VI+  QRP ++++
Sbjct: 3   FKIQSEFKPTGDQPKAIKSLVDGINNGDQYQTLLGVTGSGKTFTAANVIQETQRPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K FFP NAVEYFVSYYDYYQPEA++P + TYIEK+ SINE I++MR 
Sbjct: 63  HNKTLAAQLYSEMKAFFPDNAVEYFVSYYDYYQPEAFIPSSGTYIEKDLSINEDIEKMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T +LL  R D IVV+SVSC+YGIG+   + + +++LK  + + + +LL  LV+  Y R
Sbjct: 123 STTSALLSGRRDVIVVASVSCLYGIGNPVEFQKNVIRLKRDEVIARTQLLHKLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RG FR+ GD+I++FPS+  D A+++  FG++IE I  F P+ G+ +   + I I
Sbjct: 183 TTADFNRGNFRINGDTIDVFPSYA-DYAFKIHFFGDEIELIETFNPVDGRLMEQWQEITI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+E+L  ++   ++ G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLQNAIHSIQEDLVKQVDYFKEIGKPLEAKRLQERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y PED L+ +DESHVT+PQ+S MY GD  RK  L +
Sbjct: 302 SGIENYSRYLDGRLPGTRPFCLLDYFPEDFLMVIDESHVTVPQVSAMYGGDRSRKENLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   + VSATP  +EL + +G+  EQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEMLQNQVLYVSATPADYELAKTEGVYTEQIIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R ++ Q++D+ +EI+   +   R+L+T LTKRMAE+LT+YL   +IR RY+HS+V TL
Sbjct: 422 EVRPSQNQIDDLVEEIHKRVELDERVLVTTLTKRMAEELTKYLSRISIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+ I+ DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR+  SL QTIGRAA
Sbjct: 482 ERVAIMHDLRSGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRNNRSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----DP 735
           RNVN   ILYAD IT S+Q  ID+T  RR KQ+ +N+ H + P ++K+ +   +    + 
Sbjct: 542 RNVNGLAILYADKITNSMQETIDQTEYRRSKQIAYNETHGLKPMAIKKSLETALTKKREA 601

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               + +    + + +   LSK+K +  ++  RKQM  AA  L+F EAAR+RD+IK L+ 
Sbjct: 602 TYTIEKSLNLAAAEEEATYLSKEKLEQKIRDTRKQMEKAAKELDFMEAARLRDQIKMLQE 661

Query: 796 SP 797
             
Sbjct: 662 KV 663


>gi|283768498|ref|ZP_06341410.1| excinuclease ABC, B subunit [Bulleidia extructa W1219]
 gi|283104890|gb|EFC06262.1| excinuclease ABC, B subunit [Bulleidia extructa W1219]
          Length = 660

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/660 (47%), Positives = 440/660 (66%), Gaps = 3/660 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D   F++ + + P+GDQP AI +L+KG+ S +K Q+L G TG+GKTFTMA +I  + RP 
Sbjct: 2   DDRPFELVSTFKPTGDQPKAIEELVKGVLSGKKEQVLQGATGTGKTFTMANIIAKVNRPT 61

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           ++ + NK LA QLYSEFK  FP+N VEYF+S +DYYQPEAYV + D YIEK ++IN+++D
Sbjct: 62  LIFSHNKTLAGQLYSEFKELFPYNRVEYFISNFDYYQPEAYVAQRDMYIEKTAAINDELD 121

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
             R S   SLLER D IVV+SV+CIY     + Y  M   +++G+S  +  LL  LV+ Q
Sbjct: 122 MFRESTINSLLERRDTIVVASVACIYAASDPKQYKDMFFTIRVGESYNRNALLRRLVEMQ 181

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D+  +RG+ RV GD I++ PS  +    R+ +FG++++ I+E  P TG  +   + 
Sbjct: 182 YGRNDVDQVRGSMRVRGDVIDLTPSFTDQFNIRIELFGDEVDRITEVDPTTGTTLNAYQF 241

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             I+  S Y   + ++  A   I+ EL+ RL   +K  +LLE +RLEQR  +D+E L   
Sbjct: 242 YNIFPASGYARNKESILRACDAIEAELEERLRYFKKHDKLLEYERLEQRTRFDIESLREN 301

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G    IENYS ++  R  G+ P  LF+Y PE+ L+ VDESHV++PQI GMY GD  RK T
Sbjct: 302 GYVSGIENYSFHIDHRKQGQRPWNLFDYFPENFLIMVDESHVSLPQIRGMYNGDHSRKQT 361

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS ++NRP++++E+  + P  I  SATPG +ELE+    +VEQIIRPTGL+D
Sbjct: 362 LVDYGFRLPSALENRPMKWDEFEAMIPQVIYCSATPGDYELEKVHNHVVEQIIRPTGLLD 421

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P VE+R  + Q++D+   ++   Q+  ++L+T LT  M+EDLT YL ER  +V Y+H E 
Sbjct: 422 PVVEVRPTKGQIDDICIALDERIQKKEKVLITTLTVHMSEDLTSYLKERGYQVSYIHHET 481

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER +II DLR+GK+DV+VGINLLREGLDIPE  L+ ILDADKEGFLRSK SLIQ IG
Sbjct: 482 NTIERSQIIHDLRIGKYDVVVGINLLREGLDIPEVSLICILDADKEGFLRSKRSLIQIIG 541

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  V +Y DTIT S++ AI+ET RRR  Q  +NK+H+I P++V++ I +VI   
Sbjct: 542 RAARNANGHVYMYGDTITDSMKEAIEETNRRRYIQETYNKEHHIVPKTVQKSIGDVIRGK 601

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             ++ A+  I   A+   +SK+     +  L  +M  AA NLNFE AA +RD +  LK+ 
Sbjct: 602 ETQEMASRYIRKKAK---MSKQDTATLITHLEAEMKEAAANLNFERAAELRDMVLELKAE 658


>gi|57234749|ref|YP_181185.1| excinuclease ABC subunit B [Dehalococcoides ethenogenes 195]
 gi|90110883|sp|Q3Z9B4|UVRB_DEHE1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|57225197|gb|AAW40254.1| excinuclease ABC, B subunit [Dehalococcoides ethenogenes 195]
          Length = 668

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/660 (50%), Positives = 461/660 (69%), Gaps = 4/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +D+  +GDQP A+ +L +G+      Q LLGVTGSGKTFTMA VI  + RP +
Sbjct: 1   MPDFKIVSDFALTGDQPQAVEKLSEGLAHGLTDQTLLGVTGSGKTFTMANVIARVNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLYSE K F P N+VEYFVSYYDYYQPEAYVP+ D YIEK++ INE+ID+
Sbjct: 61  IISHNKTLAAQLYSEMKEFLPENSVEYFVSYYDYYQPEAYVPQKDMYIEKDADINEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+ATR+L ER D ++V+SVSCIYG+G  E Y   ++ LK G S+ +  +L  LV  QY
Sbjct: 121 LRHAATRALFERRDVVIVASVSCIYGLGEPEEYRSFVLPLKKGQSLRRDLILRRLVDMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RG FR+ GD++EI P++ E++A RV  FG++IE I    P++G+ + +++ I
Sbjct: 181 ERNDIDFSRGKFRLRGDTLEIQPAY-EELALRVEFFGDEIERIVSLDPVSGELLADIDEI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VT    +  A+K I+ EL+ RL ELE EG++LEA RL+QR  YDLEM++  G
Sbjct: 240 NIYPAKHFVTSAEKMAEAIKGIQAELEDRLKELEAEGKMLEAARLKQRTNYDLEMMQQAG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  +ENYSR+L GR  G  P TL +Y PED LL VDESH+++PQI GMY GD  RK TL
Sbjct: 300 YCSGVENYSRHLAGRKAGSAPWTLLDYFPEDFLLIVDESHMSLPQIRGMYAGDAARKKTL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS MDNRPL F+E+       I VSATPG +E E  Q  +VEQ++RPTGL++P
Sbjct: 360 VDYGFRLPSAMDNRPLSFDEFKARVKQAIYVSATPGPYEKEHSQQ-VVEQLVRPTGLLEP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++    Q++D+ +E+     +  R+L+T LTK+M+E L +YL E  I+  Y+HSEV 
Sbjct: 419 VITVKPTGGQIDDLLEEVKKRVDKKERVLITTLTKKMSEKLADYLVEMGIKTHYLHSEVD 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+EI+RDLRLG +DV+VGINLLREGLD+PE  LVAILDADKEG+LRS+ +LIQT+GR
Sbjct: 479 TLERVEILRDLRLGVYDVIVGINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V+ +VI+YAD IT S+Q A+DE +RRR+ Q ++N+ HNI PQ +++ I ++ + I 
Sbjct: 539 AARHVDGQVIMYADKITGSMQRAMDEISRRRKIQEDYNRLHNITPQGIRKAIKDINERIR 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
              A  +            ++     +K L  QM  AA NL FE AA IRD +  L+++ 
Sbjct: 599 SVTAEVSGPEFRPAPTL--REDIVRLIKELESQMKKAAKNLEFERAALIRDRVVELRAAL 656


>gi|237785414|ref|YP_002906119.1| excinuclease ABC subunit B [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758326|gb|ACR17576.1| excinuclease ABC, subunit B [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 736

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/721 (47%), Positives = 473/721 (65%), Gaps = 42/721 (5%)

Query: 116 LLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLG 175
                 I +      + +  +    F++ +DY P+GDQP AI ++ + +   E+  +L+G
Sbjct: 10  FAAEHPILSQSEFRPVGDIERTSKPFEVVSDYEPAGDQPQAIKEIDERLRRGERDVVLMG 69

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            TG+GK+ T A +IE  QRP +VMAPNK LAAQL +E +   P+NAVEYFVSYYDYYQPE
Sbjct: 70  ATGTGKSATAAWLIEKQQRPTLVMAPNKTLAAQLANELRQLLPNNAVEYFVSYYDYYQPE 129

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AY+ +TDTYIEK+SSINE ++R+RHSAT +LL R D +VVSSVSCIYG+G+ +SY    +
Sbjct: 130 AYIAQTDTYIEKDSSINEDVERLRHSATSNLLSRRDVVVVSSVSCIYGLGTPQSYLDRSI 189

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L++G+ V++ + L  LV  QY R D+   RGTFRV GD ++I P++ E+V  RV  FG+
Sbjct: 190 PLRVGEEVDRDQFLRLLVDVQYTRNDVAFTRGTFRVKGDVVDIIPAY-EEVGVRVEFFGD 248

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ +   +PLTG+ I   + ++I+  +HYV     +  A + IK ELK RL +LE  G+
Sbjct: 249 EIDSLHTIHPLTGEVIDTHDQLRIFPATHYVAGPERMAKAEEAIKAELKDRLADLENRGK 308

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           L+EAQRL  R  +DLEM+E  G C  IENYSR++ GR  G  P TL +Y PED L  +DE
Sbjct: 309 LVEAQRLRMRTEFDLEMIEQVGFCSGIENYSRHIDGREAGSAPATLIDYFPEDFLTIIDE 368

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SHVT+PQI GM+ GD  RK  L ++GFRLPS +DNRPL ++E++  +   + +SATPG +
Sbjct: 369 SHVTVPQIGGMFEGDASRKRNLIDFGFRLPSAIDNRPLTWDEFDARKGQCVYMSATPGDY 428

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           ELE   G  VEQ+IRPTGLVDP + ++  + Q++D+ +EI     +  R+L+T LTK+MA
Sbjct: 429 ELEAAGGEYVEQVIRPTGLVDPKIVVKPTKGQIDDLMEEIRQRTDKNERVLVTTLTKKMA 488

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL +  IRVRY+HS++ TL+R+E++RDLRLGK+DVLVGINLLREGLD+PE  LV+
Sbjct: 489 EDLTDYLADAGIRVRYLHSDIDTLQRVELLRDLRLGKYDVLVGINLLREGLDLPEVSLVS 548

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLRS  SLIQTIGRAARNV+ +V +YADT+T S+  AIDET RRREKQ+  N
Sbjct: 549 ILDADKEGFLRSTRSLIQTIGRAARNVSGEVHMYADTVTDSMAQAIDETERRREKQIAFN 608

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTNISI--------------------------- 748
           K+HNI+PQ +++KI +++D +   ++                                  
Sbjct: 609 KEHNIDPQPLRKKIADILDQVYDNESEADEHGPGGTTTAGGGAQTSANGNGQKVQSTSSL 668

Query: 749 ----------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI----KRLK 794
                     +     +++         L +QM  AA +L FE AAR+RDE+    K LK
Sbjct: 669 TSDAALAGDQEPDYTEMTRDDLVRLRDDLTRQMGDAARDLKFELAARLRDELVGVKKELK 728

Query: 795 S 795
            
Sbjct: 729 E 729


>gi|332886177|gb|EGK06421.1| UvrABC system protein B [Dysgonomonas mossii DSM 22836]
          Length = 673

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/671 (50%), Positives = 457/671 (68%), Gaps = 11/671 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQPAAIA L +G+      Q LLGVTGSGKTFT+A VI+ + +P +V++
Sbjct: 3   FKLTSNYSPTGDQPAAIAALSEGVLQDIPFQTLLGVTGSGKTFTVANVIQNVDKPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P T+TYIEK+ SIN++I+++R 
Sbjct: 63  HNKTLAAQLYSEFKTFFPDNAVEYFVSYYDYYQPEAYIPSTNTYIEKDLSINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           + T SLL  R D IVVSSVSC+YG+G+ E +    + LK+G  + +   L SLV   Y R
Sbjct: 123 ATTTSLLSGRRDIIVVSSVSCLYGMGNPEDFESSTISLKVGQKIVRDVFLRSLVSALYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++    G FRV GD++++F ++  D   RV  +G++IE I    PLTG KI +    +I
Sbjct: 183 NEVDPKAGNFRVKGDTVDVFLAYG-DPIVRVVFWGDEIESIECLDPLTGIKIDSYNDFRI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +  ++ A+  I+ +L  ++   +  G+ LEA+RL +R+TYDLEM+   G C
Sbjct: 242 YPANLFVTTKDRMDRAIGEIEIDLGRQVEFFQSIGKPLEAKRLYERVTYDLEMIREVGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY   R PG  P  L ++ P+D LL VDESHVTIPQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDNRKPGTRPFCLLDFFPDDFLLVVDESHVTIPQIRAMYGGDHSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL+FEE+  L P TI VSATP  +EL + +G+IVEQ+IRPTGL+DPP+
Sbjct: 362 YGFRLPAALDNRPLKFEEFESLVPQTIYVSATPADYELLKSEGVIVEQLIRPTGLLDPPI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ +EI +  +Q  R L+T LTKRMAE+LT YL    I   Y+HS+V TL
Sbjct: 422 DVRPSLNQIDDLMEEIQMRVEQNERTLVTTLTKRMAEELTNYLSNNGISCSYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +RI+I+  LR G+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 DRIQIMDSLRTGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI YAD IT S+   I+ET RRREKQ+ +N++H I P+ +++    V      E
Sbjct: 542 RNVNGKVIFYADKITDSMAKTINETNRRREKQMAYNEEHGIVPKQIQKARTSVFTQRKGE 601

Query: 740 DAATTN---------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           D+A            I+ + Q   +S ++ K  +   +KQM  AA  L F EAA+ RD++
Sbjct: 602 DSAIPQPYSQDSILSIASEDQMQYMSAEELKKAIAKAKKQMSAAAKKLEFLEAAQYRDQV 661

Query: 791 KRLKSSPYFQG 801
            +L+     +G
Sbjct: 662 IKLEDELKSKG 672


>gi|291301234|ref|YP_003512512.1| excinuclease ABC subunit B [Stackebrandtia nassauensis DSM 44728]
 gi|290570454|gb|ADD43419.1| excinuclease ABC, B subunit [Stackebrandtia nassauensis DSM 44728]
          Length = 701

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/680 (52%), Positives = 474/680 (69%), Gaps = 24/680 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +DY PSGDQP AI +L + I+  E+  +LLG TG+GK+ T A ++E +QRPA+VMA
Sbjct: 14  FTVVSDYEPSGDQPTAITELARRINGDERDVVLLGATGTGKSATAAWLVERLQRPALVMA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL  EF+   P+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SSIN++++R+RH
Sbjct: 74  HNKTLAAQLAKEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDEVERLRH 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S   SLL RND +VV++VS IYG+ +   + +    +K+G+  ++  LL  LV+ QY R 
Sbjct: 134 STMHSLLTRNDVVVVATVSAIYGLVTPTEFYKHTATVKVGEEYDRDSLLRRLVEIQYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD+I+I P++ E++A R+ MFG+++E++    PLTG+ +R+V  + I+
Sbjct: 194 DYAFTRGTFRVRGDTIDIIPAY-EELAVRIEMFGDEVEKLFYINPLTGEVVRHVTELVIF 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + YVT       A++ I+ EL+ RL ELE++ + LE+QRL  R TYDLEM+   GSC 
Sbjct: 253 PGAAYVTSGENQERAVRDIEAELEERLAELERQSKHLESQRLRMRTTYDLEMIRQIGSCS 312

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GR+ GEPP TL +Y PE+ +  +DESH T+PQI GMY GD  RK TL E+
Sbjct: 313 GIENYSRHFDGRSAGEPPYTLLDYFPENFITIIDESHQTVPQIGGMYEGDASRKRTLVEH 372

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS MDNRPLRF+E+      T+ +SATPG WELEQ +G   EQ+IRPTGLVDP V 
Sbjct: 373 GFRLPSAMDNRPLRFDEFRERVGQTVYMSATPGPWELEQAKGQYAEQVIRPTGLVDPQVV 432

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI   A+   R+L+T LTK+MAEDLT+Y  + NIRVRY+HSEV TL 
Sbjct: 433 VRQTKGQIDDLMHEITERAKANERVLVTTLTKKMAEDLTDYFLDNNIRVRYLHSEVDTLR 492

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R+LR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQTIGRAAR
Sbjct: 493 RVELLRELRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAAR 552

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+ +VI+YAD IT S++ A+DET RRREKQ+ HNK+H I+P  ++++I +++D I    
Sbjct: 553 NVSGQVIMYADKITDSMRKALDETDRRREKQIAHNKEHGIDPTPLRKRIGDILDDIYATA 612

Query: 741 AATTNI-----------------------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
             T  +                       ++ A    + +++  + + +L  QM  AA  
Sbjct: 613 DDTETLVGGSGRQQSRGKAPVPQTRSRAGAVVASGEGVPREELTSMIATLNDQMLTAARE 672

Query: 778 LNFEEAARIRDEIKRLKSSP 797
           L FE AAR RDEI  LK   
Sbjct: 673 LQFEVAARYRDEIAELKREL 692


>gi|325285016|ref|YP_004260806.1| UvrABC system protein B [Cellulophaga lytica DSM 7489]
 gi|324320470|gb|ADY27935.1| UvrABC system protein B [Cellulophaga lytica DSM 7489]
          Length = 661

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/660 (50%), Positives = 453/660 (68%), Gaps = 5/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L+KG++  EK Q LLGVTGSGKTFT+A V+E +Q+P +V+A
Sbjct: 3   FKVVSKFEPTGDQPQAIKELVKGVNEGEKHQTLLGVTGSGKTFTVANVVEKVQKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P T T+IEK+ SINE I+++R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPTTGTFIEKDLSINEDIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT SLL  R D IV++SVSC+YGIG+   + + ++ +K    + + + L  LV+  Y R
Sbjct: 123 SATSSLLSGRRDVIVIASVSCLYGIGNPVEFQKNVISIKRDQVISRTKFLHQLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                  G FRV GD +++FPS+  D A+R+  FG++IEEI  F PL  + +   E + I
Sbjct: 183 TTEDFRNGNFRVKGDVVDVFPSYA-DHAFRIHFFGDEIEEIEAFDPLHNKVLEVYENLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+ ++  ++   ++ G+ LEA+RLE+R T+DLEM+   G C
Sbjct: 242 YPANMFVTSPDILQNAIHAIQADMVKQVDYFKEIGKHLEAKRLEERTTFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ +DESHVT+PQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGRLPGTRPFCLLDYFPDDYLMVIDESHVTVPQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  ++   I VSATP  +EL+   G+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEMIQNQVIHVSATPADYELQLSGGVYVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR +  Q++D+ +EI+L  ++  R L+T LTKRMAE+L +YL   ++R RY+HS+V TL
Sbjct: 422 EIRPSLNQIDDLVEEIHLRIEKDERTLVTTLTKRMAEELAKYLDRISVRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSARSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN K I+YAD IT S+Q  IDET  RRE+Q+ +N KHN  P ++ + +   +    + 
Sbjct: 542 RNVNGKAIMYADKITASMQKTIDETNYRRERQIAYNTKHNKKPMALNKSLDSALSQNSVS 601

Query: 740 D---AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                     + +     L+  +    ++  RK M  AA  L+F EAA++RDEIK L+  
Sbjct: 602 TYHFEKEEARAAEPDMAYLTTDQKDKMIREKRKAMEKAAKELDFMEAAKLRDEIKALQEK 661


>gi|282891380|ref|ZP_06299881.1| hypothetical protein pah_c052o010 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498732|gb|EFB41050.1| hypothetical protein pah_c052o010 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 669

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/659 (52%), Positives = 464/659 (70%), Gaps = 4/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++ + P GDQP AI ++++GI   +K Q+LLG+TGSGKT+TMA V+  +QRP +V+A
Sbjct: 5   FQLESHFPPGGDQPQAIEKIVQGITEGKKSQVLLGITGSGKTYTMANVVAQVQRPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFPHNA+EYFVSYYDYYQPEAY+ RTDTYIEK+ +IN++ID+MR 
Sbjct: 65  HNKTLAAQLYQEFKSFFPHNAIEYFVSYYDYYQPEAYIARTDTYIEKDMAINDRIDKMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D ++V+SVSCIYG+G+ E Y  M + L  G +  + ++L  LV+ QY R 
Sbjct: 125 SATRSLLERRDVLIVASVSCIYGLGTPEYYRGMNLTLATGQNRRRDDILLHLVEMQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TFRV GD +EIFP++ ED++ RV  FG+DIE ISE  PLTG+  + ++ I IY
Sbjct: 185 DYDFSRATFRVRGDVLEIFPAYEEDLSIRVEFFGDDIERISEIDPLTGKVRQRIQQITIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SH+VTP      A++ IK EL  R+   EK   L+E QR++QR  +D+EM+   G C+
Sbjct: 245 PSSHHVTPEEVRWHALETIKAELAERMEFFEKNNLLIERQRIQQRTQHDMEMIREIGFCK 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ + R PG+PPP L +Y P D LL +DESH T+PQ+  MY GD  RKA L ++
Sbjct: 305 GIENYSRHFSQRQPGDPPPCLIDYFPSDFLLIIDESHQTLPQMRAMYNGDKARKAALVDF 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE        + VSATP  WE+ + +G IVEQ+IRPTGL+DP +E
Sbjct: 365 GFRLPSAYDNRPLKFEESYSHFHQVVYVSATPAEWEVAEAEGEIVEQVIRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D   EI    ++G R+L+T LTKR+AE+LT YL E +++ +Y+HS++ TLE
Sbjct: 425 VRPADGQVDDSLAEIRTHVEKGGRVLVTTLTKRLAEELTTYLTELDVKAKYLHSDIDTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +II+DLR G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQT GRAAR
Sbjct: 485 RSQIIQDLRAGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTCGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VI+YA+ ITK+I+  +D T  RR  Q E+N +H I P++VK +I  +++P ++ +
Sbjct: 545 NSEGRVIMYANKITKAIRHTLDITESRRVMQHEYNLEHGITPRTVKREISPLVEPDIIYE 604

Query: 741 AATTNIS----IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             T   +     +     L+  + +  ++     M  AA  + FE+AA  RD +K  + 
Sbjct: 605 DQTEVKAHLKVAEGHHDYLTLDEIRLKVRENENLMKKAAKEMQFEDAAHFRDLMKHYQQ 663


>gi|325282776|ref|YP_004255317.1| UvrABC system protein B [Deinococcus proteolyticus MRP]
 gi|324314585|gb|ADY25700.1| UvrABC system protein B [Deinococcus proteolyticus MRP]
          Length = 678

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/667 (50%), Positives = 464/667 (69%), Gaps = 8/667 (1%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             ++    ++ +++ PSGDQP AI  L+ G+ S  + Q LLG TG+GKT++MAKVIE  Q
Sbjct: 2   SERNQRPLKVHSEFQPSGDQPTAIRTLVDGLESGLRFQTLLGATGTGKTYSMAKVIEETQ 61

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RPA++MAPNK+L AQL +EF+ FFP NAVE+F+SYYDYYQPEAYVP  D +IEK++SIN+
Sbjct: 62  RPALIMAPNKVLTAQLAAEFREFFPDNAVEFFISYYDYYQPEAYVPGKDLFIEKDASINQ 121

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +I+R+RHS TRSLL R D IVV+SVS IYG+G    Y+ + + LK+G+ V ++ ++  LV
Sbjct: 122 EIERLRHSTTRSLLTRRDVIVVASVSAIYGLGDPAEYTALNLVLKVGEEVGREAIIERLV 181

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY+R DI ++ G FR  G+ +E++ ++ ++   R+ ++G+++E IS   PLTG +I +
Sbjct: 182 GMQYERNDIELLPGRFRAKGEMVEVWAAY-DEQPTRIELWGDEVERISLVDPLTGDRITD 240

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           ++   +Y   HYV+    +  A+  I++EL+ RL      G+LLEAQRL++R  YDLEML
Sbjct: 241 MDGTVVYPAKHYVSGAGNIERAIGGIEKELEERLEYFMSTGKLLEAQRLKERTLYDLEML 300

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
              G C  IENYSR++ GR PGE P T+ +Y P+D + F+DESHVT+ QI GM  GD  R
Sbjct: 301 RVLGHCSGIENYSRHIDGRRPGETPYTMLDYFPDDFITFIDESHVTVSQIGGMANGDRAR 360

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL ++GFRLPS MDNRPL  +E+       + VSATPG +E E     I +QIIRPTG
Sbjct: 361 KQTLVDHGFRLPSAMDNRPLNLDEFWAKTGQVVFVSATPGPFEREHSDQ-IADQIIRPTG 419

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           LVDPPV +R  + QV+D+   +   A  G R L+T LTKRMAEDLTEYL E+ +R RYMH
Sbjct: 420 LVDPPVTVRPIQGQVDDLLGRVRERAAAGERTLVTTLTKRMAEDLTEYLLEKGVRARYMH 479

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++ ++ER  IIRDLRLG +DVLVGINLLREGLD+PE  LVAILDADK GFLRS+ SLIQ
Sbjct: 480 SDIDSVERQVIIRDLRLGHYDVLVGINLLREGLDLPEVSLVAILDADKPGFLRSERSLIQ 539

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           TIGRAARNVN +VILY D +T ++Q A+DET RRREKQL +N++H I P++V + + +VI
Sbjct: 540 TIGRAARNVNGEVILYGDNVTPAMQFAMDETLRRREKQLAYNEEHGITPRTVSKSVRDVI 599

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
               +E   ++    D       ++   A L  L   M  A+++L+FE AA +RD+I+ +
Sbjct: 600 RGEEVEGEISSENVGD------DREALTAQLTELELSMWQASEDLDFELAASLRDQIRAI 653

Query: 794 KSSPYFQ 800
           ++    +
Sbjct: 654 EAKLQGK 660


>gi|139439832|ref|ZP_01773209.1| Hypothetical protein COLAER_02240 [Collinsella aerofaciens ATCC
           25986]
 gi|133774847|gb|EBA38667.1| Hypothetical protein COLAER_02240 [Collinsella aerofaciens ATCC
           25986]
          Length = 753

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/703 (49%), Positives = 474/703 (67%), Gaps = 34/703 (4%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
                 F++ + Y P+G QP AI  L++G+   ++ Q+LLGVTGSGKTFTMAK IEA+ +
Sbjct: 26  EGAEVPFEVVSPYEPAGSQPKAIESLVRGVRDGDRYQVLLGVTGSGKTFTMAKTIEALGK 85

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +VMAPNK LAAQL SE K FFP+NAV YFVSYYDYYQPEAYVP++DTYIEK+SSINE+
Sbjct: 86  PTLVMAPNKTLAAQLASELKEFFPNNAVVYFVSYYDYYQPEAYVPQSDTYIEKDSSINEE 145

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++ +RH AT SLL R D IVV+SVSCIYGIGS E Y+ +   +     +E+ + + +L+ 
Sbjct: 146 VEMLRHQATASLLSRRDVIVVASVSCIYGIGSPEDYAGLAPNVDKKVPLERDDFIHALID 205

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D  + RGTFRV GD ++++P + E    R   FG+++E I+E   +TG+ +R  
Sbjct: 206 IQYDRNDYDLARGTFRVRGDVVDVYPPYAE-HPLRFEFFGDEVELIAEIDEVTGEMLREY 264

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           E I ++  SHYVT +P +  A+K I EE + R+ EL+   +LLEAQRL+QR  YDLEMLE
Sbjct: 265 EAIPVWPASHYVTEKPKVKAALKSISEECEKRVAELKATDKLLEAQRLQQRTDYDLEMLE 324

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
           T G C  IENYSR+L GR PGEPP TL +Y P+D L  +DESHVT+PQI GM+ GD  RK
Sbjct: 325 TMGFCNGIENYSRHLDGRKPGEPPFTLIDYFPKDMLCIIDESHVTVPQIRGMHEGDRSRK 384

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL E+GFRLPS +DNRPLRF+E+    P  I VSATPG +EL   Q   VEQIIRPTGL
Sbjct: 385 VTLVEHGFRLPSALDNRPLRFDEFEARIPQFIYVSATPGDYELRVSQND-VEQIIRPTGL 443

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +++R  R Q++D+ DEI     +  R+L+T LTKRMAEDLT++L +  I+V YMHS
Sbjct: 444 LDPKIDVRPVRGQIDDLEDEIRERVARKERVLVTTLTKRMAEDLTDHLLDAGIKVNYMHS 503

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +  T++R+EI+R LR GK DVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQT
Sbjct: 504 DTATMDRVEILRTLREGKIDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNRRSLIQT 563

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN + +VI+YAD +T S++ AI+ET RRRE Q+ +N++H I P++V++ I ++  
Sbjct: 564 IGRAARNADGEVIMYADVVTDSMKEAIEETQRRREIQMAYNEEHGIVPKTVRKAINDISS 623

Query: 735 PILLEDA--------------------------------ATTNISIDAQQLSLSKKKGKA 762
            I   +                                      ++  Q   L   +   
Sbjct: 624 FIAEAEKTVGSKGRSKGDSLGHGAFYTPDESGEGGVPETVAPEQTLAEQLQELPHDELVR 683

Query: 763 HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
            ++++ + M  A+  ++FEEAAR+RD + ++++       D++
Sbjct: 684 IVETMEEDMRNASAAMDFEEAARLRDAVVQIRAMLEGASEDET 726


>gi|183601487|ref|ZP_02962857.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683971|ref|YP_002470354.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191013|ref|YP_002968407.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196419|ref|YP_002969974.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219093|gb|EDT89734.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621621|gb|ACL29778.1| excinuclease ABC, B subunit [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249405|gb|ACS46345.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250973|gb|ACS47912.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295794002|gb|ADG33537.1| excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 703

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/694 (50%), Positives = 465/694 (67%), Gaps = 31/694 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N  +    F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +
Sbjct: 4   NIERTNKPFVVKSPYQPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERL 63

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN
Sbjct: 64  QRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNIN 123

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ++R+RH+AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ L  GD +++ +LL + 
Sbjct: 124 DDVERLRHAATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLHEGDQIDRDDLLRTF 183

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I 
Sbjct: 184 VDMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIE 242

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V  + I+  SHYV     +  A+  I+ EL  R+ EL K+G+ LEAQRL  R TYDLEM
Sbjct: 243 QVSDVHIFPASHYVAGPERMAKALDSIQRELDERVAELRKQGKELEAQRLSMRTTYDLEM 302

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G C  +ENYSR+  GR  G PP TL ++ P+D LL +DESHVT+PQI  MY GD  
Sbjct: 303 LSQVGVCSGVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDAS 362

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPT
Sbjct: 363 RKRTLVEHGFRLPSAMDNRPLKWPEFLDRVGQTVYLSATPGDYELGLSDG-VVEQIIRPT 421

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP +E+R    Q++D+  EI      G R L+T +TK+MAEDLT+YL ER I+V Y+
Sbjct: 422 GLLDPKIEVRPVEGQIDDLLAEIKDRVAAGERTLVTTMTKKMAEDLTDYLLERGIKVEYL 481

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 482 HSDVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLI 541

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+  VI+YAD +T S+  AI+ET RRRE Q+ +N++H+I+P+ + +KI +V
Sbjct: 542 QTIGRAARNVSGTVIMYADEMTDSMSKAIEETNRRREIQMAYNEEHHIDPKPLIKKISDV 601

Query: 733 IDPILLEDAATTNI-----------------------------SIDAQQLSLSKKKGKAH 763
            D +  ED  T  +                               +  +  L  +     
Sbjct: 602 NDMLAKEDVDTQELLEGGYRNSGKAGNSHLGLPNTTPEEADRRHEEILKAGLPAQDLADL 661

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L  QMH AA+ L FE AAR+RDEI+ LK   
Sbjct: 662 IRQLSDQMHTAAEQLQFELAARLRDEIRDLKKEL 695


>gi|301167406|emb|CBW26988.1| UvrABC system protein B [Bacteriovorax marinus SJ]
          Length = 669

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/662 (52%), Positives = 459/662 (69%), Gaps = 2/662 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +  + F +Q++++P GDQP AI  L     + EK Q LLGVTGSGKTFTMA VI+ + + 
Sbjct: 3   EKKSVFNIQSEFNPCGDQPEAIKNLTNKFSAGEKEQTLLGVTGSGKTFTMAHVIQNLGKK 62

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +++A NK LAAQLY+EF+ FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N++I
Sbjct: 63  TLILAHNKTLAAQLYAEFREFFPNNAVEYFVSYYDYYQPEAYVPGTDTFIEKDASVNDEI 122

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT++LLER+D IVV+SVSCIYGIGS + Y    + L + D +++ ELL  LV  
Sbjct: 123 DKLRHSATKNLLERDDVIVVASVSCIYGIGSPDEYESQKINLFVDDEMDRDELLKDLVSI 182

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Q++R DI   RG FRV GD +E+FP+  E    R+  F + IE IS   PL G+ ++N+ 
Sbjct: 183 QFQRNDIDFSRGCFRVRGDLVEVFPASEESDVIRIEFFDDTIESISIVDPLRGKVLQNLN 242

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I IY  SHYV     L  A+  IK EL+ RL EL  + +L+E QRLEQR   DLEM+E 
Sbjct: 243 KITIYPKSHYVVSEKKLENAISTIKLELRERLQELGAQEKLVERQRLEQRTLLDLEMMEE 302

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR+LTG   G+PPPTL ++   + L+ +DESH+T+ Q+ GMYRGD  RK 
Sbjct: 303 MGFCSGIENYSRHLTGSKEGDPPPTLIDFFKNNFLMIIDESHITVSQVGGMYRGDRARKQ 362

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L ++GFRLPS +DNRPL F E+       + VSATPG +EL +  G   EQ+IRPTGL+
Sbjct: 363 NLVDFGFRLPSALDNRPLNFPEFESKLDQVLYVSATPGDYELTKTSGEYTEQVIRPTGLL 422

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR A +QV+D+  E+    ++  R+L+T LTK++AE+LT Y     I+V+Y+HS+
Sbjct: 423 DPTIEIRDASSQVDDLLVEVRKIIKKSQRVLITTLTKKLAEELTHYYKGAGIKVKYLHSD 482

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + TLER+EIIRDLRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTI
Sbjct: 483 IDTLERMEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTI 542

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM-EVID 734
           GRAARN   K ILYA   TKS++ AI ET RRR  Q E+N+++ I P ++ +K+   VI+
Sbjct: 543 GRAARNAEGKAILYAYKNTKSMEKAIFETKRRRAIQEEYNQENGITPVTISKKVSGGVIE 602

Query: 735 PILLEDAATTNISIDAQ-QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
            +             ++    L  K     ++ L  +M +A+  L+FE AA++RDEIK L
Sbjct: 603 TLRGAKGNKVAKGPKSKLSGELDAKSLDKQIEELTSKMKMASRELDFEFAAKLRDEIKSL 662

Query: 794 KS 795
           K 
Sbjct: 663 KE 664


>gi|329946780|ref|ZP_08294192.1| excinuclease ABC, B subunit [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526591|gb|EGF53604.1| excinuclease ABC, B subunit [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 698

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/692 (50%), Positives = 477/692 (68%), Gaps = 25/692 (3%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             +    +    F++ + Y PSGDQP AIA+L + + + EK  +LLG TG+GK+ T A +
Sbjct: 2   RPVTELQRAAKPFEVISPYSPSGDQPTAIAELTERLRAGEKDIVLLGATGTGKSATTAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           +E +QRP +++ PNK LAAQ+ +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDT+IEK+
Sbjct: 62  VEQVQRPTLILEPNKTLAAQMAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN++++R+RHSAT SLL R D +VVSSVSCIYG+G+ + Y   +  L++G  +++ EL
Sbjct: 122 SSINDEVERLRHSATNSLLTRRDVVVVSSVSCIYGLGTPQEYVDRMTPLEVGQQIDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L   V  QY R DI   RGTFRV GD++EI P + E++A R+  FG++IE ++  +P+TG
Sbjct: 182 LRRFVTMQYIRNDIDFTRGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIEALATLHPVTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             I   E + ++  SHYV     +  A++ I+ EL  RL +LE +GRLLEAQRL  R TY
Sbjct: 241 DVIDTAEQVFVFPASHYVAGPERMQKAIEGIETELAERLAQLEHDGRLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML+  G C  IENYS ++ GR  G PP TL +Y PED LL +DESHVT+PQI  M+ 
Sbjct: 301 DLEMLQQIGMCSGIENYSLHIDGRETGTPPNTLLDYFPEDFLLVIDESHVTVPQIGAMHE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL F E+      T+ +SATPG +E ++  G +VEQI
Sbjct: 361 GDASRKRTLVDHGFRLPSALDNRPLTFAEFEDRVGQTVYLSATPGDYETQRSDG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++    Q++D+ +E+    ++  RIL+T LTKRMAEDLT YL ER +R
Sbjct: 420 IRPTGLVDPKVVVKPTEGQIDDLLEEVRTRVEREERILVTTLTKRMAEDLTTYLAERGVR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y+HS+V TL R+E++R+LR+G+FDVLVGINLLREGLD+PE  LV+ILDADKEGFLRS 
Sbjct: 480 VEYLHSDVDTLRRVELLRELRMGRFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRST 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +V +YADTIT ++  AI+ET RRR KQL +N +H I+PQ +++K
Sbjct: 540 RSLIQTIGRAARNVSGEVHMYADTITPAMAEAIEETERRRTKQLTYNTEHGIDPQPLRKK 599

Query: 729 IMEVIDPILLEDAATTNI-----------------------SIDAQQLSLSKKKGKAHLK 765
           I +V D +  ED  T ++                       ++  +    ++      + 
Sbjct: 600 IADVTDMLAREDVDTADLLAGGYRGHEDSSVRARRKHAAEATVREKLAGAAQGDLVELIN 659

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            L +QMH AA++L+FE AAR+RDEI+ LK   
Sbjct: 660 ELTQQMHAAAEDLHFELAARLRDEIQDLKKEL 691


>gi|238544545|dbj|BAH60897.1| putative excinuclease ABC subunit B [Desulfotignum balticum]
          Length = 665

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/659 (53%), Positives = 462/659 (70%), Gaps = 3/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F +++ + P+GDQP AI  L +G+ + E  Q+LLGVTGSGKTFTMA +I  +++P++
Sbjct: 1   MSLFHLKSSFSPTGDQPKAIEYLTQGVKANEPHQVLLGVTGSGKTFTMANIIAEVEKPSL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++APNK LAAQLY+EFK  FP N VEYFVSYYDYYQPEAYVP +DTYI+K+SSIN+ ID+
Sbjct: 61  IIAPNKTLAAQLYNEFKLLFPDNCVEYFVSYYDYYQPEAYVPSSDTYIQKDSSINDIIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSATRS+L R D IVV+SVSCIYG+G+ E Y  + + L     + +  L+  LV+ QY
Sbjct: 121 MRHSATRSVLARRDVIVVASVSCIYGLGAPEDYLDLRITLARDMEISRDTLIRKLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D    RG FRV GD +E+FP++ ED A R+  FG+ IEEI E  PL G+ +   +  
Sbjct: 181 TRNDTDFHRGVFRVRGDRVEVFPAYEEDRAVRIDFFGDVIEEICEIDPLKGEILTTFDQT 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  SHYVT   T   A++ I  EL+ RL +L  + RL+EAQRLE+R  YD+EML   G
Sbjct: 241 AIYPASHYVTKSQTRKRAVEAIFAELEERLAQLRADNRLVEAQRLEERTRYDMEMLNEIG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+LTGRNPGEPPPTL +Y+P D LLF DESH+++ Q++GMY+ D  RK TL
Sbjct: 301 YCTGIENYSRHLTGRNPGEPPPTLLDYMPNDFLLFFDESHISVSQLAGMYKADRSRKLTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL F E++      I VSATP  +ELE+    + EQI+RPTGL+DP
Sbjct: 361 VEYGFRLPSAVDNRPLAFHEFSARTSRIIYVSATPADYELEKSGIRVAEQIVRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V++R A TQV+D+Y EI    +   R+L+T LTKRMAEDLTEY  +  I+V+Y+HS++ 
Sbjct: 421 KVQVRDATTQVDDLYQEIIKRVEADERVLVTTLTKRMAEDLTEYYADLGIKVKYLHSDIV 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ERIEII+DLR G FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS  S IQ  GR
Sbjct: 481 TMERIEIIQDLRRGVFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSFRSFIQIFGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP-- 735
           AARNV  +VI+YA   TKS++ A+ ET RRR+ Q  +N+ H+I P ++++++     P  
Sbjct: 541 AARNVYGRVIMYAQKETKSMKKALAETRRRRKIQQAYNEAHHIVPATIQKQLNVFKYPAS 600

Query: 736 -ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                   T ++  D Q         +  ++ L  +M  AA+NL FE+AA  RD+I++L
Sbjct: 601 DTAGSGQETPSVHEDIQAYDGDDIDLEDLIRDLEYKMKKAAENLEFEQAAVFRDKIRQL 659


>gi|289178755|gb|ADC86001.1| Excinuclease ABC subunit B [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 712

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/694 (50%), Positives = 465/694 (67%), Gaps = 31/694 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N  +    F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +
Sbjct: 13  NIERTNKPFVVKSPYQPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERL 72

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN
Sbjct: 73  QRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNIN 132

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ++R+RH+AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ L  GD +++ +LL + 
Sbjct: 133 DDVERLRHAATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLHEGDQIDRDDLLRTF 192

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I 
Sbjct: 193 VDMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIE 251

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V  + I+  SHYV     +  A+  I+ EL  R+ EL K+G+ LEAQRL  R TYDLEM
Sbjct: 252 QVSDVHIFPASHYVAGPERMAKALDSIQRELDERVAELRKQGKELEAQRLSMRTTYDLEM 311

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G C  +ENYSR+  GR  G PP TL ++ P+D LL +DESHVT+PQI  MY GD  
Sbjct: 312 LSQVGVCSGVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDAS 371

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPT
Sbjct: 372 RKRTLVEHGFRLPSAMDNRPLKWPEFLDRVGQTVYLSATPGDYELGLSDG-VVEQIIRPT 430

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP +E+R    Q++D+  EI      G R L+T +TK+MAEDLT+YL ER I+V Y+
Sbjct: 431 GLLDPKIEVRPVEGQIDDLLAEIKDRVAAGERTLVTTMTKKMAEDLTDYLLERGIKVEYL 490

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 491 HSDVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLI 550

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+  VI+YAD +T S+  AI+ET RRRE Q+ +N++H+I+P+ + +KI +V
Sbjct: 551 QTIGRAARNVSGTVIMYADEMTDSMSKAIEETNRRREIQMAYNEEHHIDPKPLIKKISDV 610

Query: 733 IDPILLEDAATTNI-----------------------------SIDAQQLSLSKKKGKAH 763
            D +  ED  T  +                               +  +  L  +     
Sbjct: 611 NDMLAKEDVDTQELLEGGYRNSGKAGNSHLGLPNTTPEEADRRHEEILKAGLPAQDLADL 670

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L  QMH AA+ L FE AAR+RDEI+ LK   
Sbjct: 671 IRQLSDQMHTAAEQLQFELAARLRDEIRDLKKEL 704


>gi|294786797|ref|ZP_06752051.1| excinuclease ABC subunit B [Parascardovia denticolens F0305]
 gi|315226426|ref|ZP_07868214.1| excision endonuclease subunit UvrB [Parascardovia denticolens DSM
           10105]
 gi|294485630|gb|EFG33264.1| excinuclease ABC subunit B [Parascardovia denticolens F0305]
 gi|315120558|gb|EFT83690.1| excision endonuclease subunit UvrB [Parascardovia denticolens DSM
           10105]
          Length = 704

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/692 (51%), Positives = 474/692 (68%), Gaps = 31/692 (4%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
            ++   F +++ Y PSGDQP AI +L + +++ E   +L+G TG+GKT T A +IE +QR
Sbjct: 9   EREDRPFVVKSPYQPSGDQPQAIEELAERLNNGESDVVLMGATGTGKTATTAWLIEKLQR 68

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAYVP+TDT+IEK+SSIN+ 
Sbjct: 69  PTLILEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYVPQTDTFIEKDSSINDD 128

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++R+RH+AT +LL R D +VVS+VSCIYG+G+ E Y+  ++ L  GD + + ELL + VK
Sbjct: 129 VERLRHAATANLLTRRDTVVVSTVSCIYGLGTPEEYASQMLFLHEGDELNRDELLRTFVK 188

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QYKR D+   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG+ I +V
Sbjct: 189 MQYKRNDLAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGEIIDHV 247

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
             I I+  +HYV     LN AMK IKEEL  R+ E +K+G+LLEAQRL+ R TYDLEML 
Sbjct: 248 TNIHIFPATHYVAGPDRLNRAMKTIKEELDERVAEFKKQGKLLEAQRLQMRTTYDLEMLA 307

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G+C  +ENYSR+  GR PG PP TL ++ P+D LL +DESH T+PQI  MY GD  RK
Sbjct: 308 QIGTCSGVENYSRHFDGRAPGTPPHTLLDFFPDDFLLVIDESHQTVPQIGAMYEGDASRK 367

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL EYGFRLPS MDNRPL +EE+      T+ +SATPG +EL    G +VEQIIRPTGL
Sbjct: 368 RTLVEYGFRLPSAMDNRPLTWEEFQQHIGQTVYLSATPGDYELGLSDG-VVEQIIRPTGL 426

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP VE+R    Q++D+  EI     +  R+L+T LTK+MAEDLT+YL +R+I+V Y+HS
Sbjct: 427 LDPQVEVRPVDGQIDDLLGEIKDRVSRNERVLVTTLTKKMAEDLTDYLLDRDIKVEYLHS 486

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +V TL R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQT
Sbjct: 487 DVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQT 546

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARNV   VI+YAD  T+++  AIDET RRRE Q+ +NK+H I+PQ + +KI +V D
Sbjct: 547 IGRAARNVQGTVIMYADKETEAMAKAIDETNRRREVQMAYNKEHGIDPQPLIKKISDVND 606

Query: 735 PILLEDAATTNI-----------------------------SIDAQQLSLSKKKGKAHLK 765
            +  ED  T  +                                  +  L  +     ++
Sbjct: 607 MLAKEDIDTETLLETGYRNSGKAGNSHLGVPDLDRKTMDGNRQRLMEAGLPAQDLADLIR 666

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            L +QMH AA+ L FE AAR+RDE++ LK   
Sbjct: 667 QLSEQMHTAAEQLQFELAARLRDEVQDLKKEL 698


>gi|261338683|ref|ZP_05966567.1| excinuclease ABC subunit B [Bifidobacterium gallicum DSM 20093]
 gi|270276309|gb|EFA22163.1| excinuclease ABC subunit B [Bifidobacterium gallicum DSM 20093]
          Length = 703

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/702 (49%), Positives = 472/702 (67%), Gaps = 33/702 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
              +    F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A ++E +
Sbjct: 4   EIERVNKPFVVKSPYQPSGDQPQAIEELATRIENGENDVVLMGATGTGKTATTAWLVERL 63

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN
Sbjct: 64  QRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNIN 123

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ++R+RH+AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK+G  +E+ +LL + 
Sbjct: 124 DDVERLRHAATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLLLKVGQQIERDQLLRTF 183

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ I+  +PLTG  I 
Sbjct: 184 VDMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRITMLHPLTGDVIG 242

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
             E++ I+  SHYV     +  A+  I++EL  R+ +L ++G+ LEAQRL  R TYDLEM
Sbjct: 243 EQESVHIFPASHYVAGPERMQRALTSIQQELDERVAQLHQQGKELEAQRLSMRTTYDLEM 302

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G C  +ENYSR+  GR PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  
Sbjct: 303 LSQVGVCSGVENYSRHFDGRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDAS 362

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPT
Sbjct: 363 RKRTLVEHGFRLPSAMDNRPLKWPEFLDRVGQTVYLSATPGEYELGLSDG-VVEQIIRPT 421

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +++R    Q++D+  EI     +G R L+T LTK+MAEDLT+YL ER I+V Y+
Sbjct: 422 GLVDPRIDVRPVEGQIDDLLAEIKDRVAKGERALVTTLTKKMAEDLTDYLLERGIKVEYL 481

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 482 HSDVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLI 541

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+  VI+YAD IT ++  AI ET RRRE Q+++N +H I+PQ + +KI +V
Sbjct: 542 QTIGRAARNVSGTVIMYADDITDAMDKAITETNRRREIQMKYNDEHGIDPQPLIKKISDV 601

Query: 733 IDPILLEDAATTNI-----------------------------SIDAQQLSLSKKKGKAH 763
            D +  ED  T  +                               +  +  L  +   + 
Sbjct: 602 NDMLAKEDVDTQELLEGGYRNANKAGNSHLGVPLTDADEAQRRHEELLKAGLPAQDLASL 661

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           ++ L  QMH AA+ L FE AAR+RDEI+ LK     + + D+
Sbjct: 662 IRQLSDQMHTAAEQLQFELAARLRDEIRDLKKE--LRAMTDA 701


>gi|218130938|ref|ZP_03459742.1| hypothetical protein BACEGG_02540 [Bacteroides eggerthii DSM 20697]
 gi|217987282|gb|EEC53613.1| hypothetical protein BACEGG_02540 [Bacteroides eggerthii DSM 20697]
          Length = 718

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/688 (48%), Positives = 470/688 (68%), Gaps = 23/688 (3%)

Query: 130 SINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI 189
           S+ ++  ++  F++ + YHP+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI
Sbjct: 25  SLPDNPDEMNKFELTSAYHPTGDQPEAIAQLTEGVREGVPAQTLLGVTGSGKTFTIANVI 84

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
             + +P ++++ NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ 
Sbjct: 85  ANINKPTLILSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDL 144

Query: 250 SINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           +IN++ID++R +AT +LL  R D +VVSSVSCIYG+G+   +   +++++ G +  +   
Sbjct: 145 AINDEIDKLRLAATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQGKNYSRNVF 204

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV   Y R DI + RG FRV GD+++I+ ++ +++  R+  +G++I+ I E  P++G
Sbjct: 205 LRRLVDSLYVRNDIDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEIDSIEEVDPVSG 263

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             I   +  KIY  + ++T +     A+  I+++L  ++   E EGR  EA+RL++R+TY
Sbjct: 264 VTIARFDAYKIYPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAKRLQERVTY 323

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G C  IENYSRY  GR  G  P  L ++ PED L+ +DESHV++PQI  MY 
Sbjct: 324 DMEMMRELGHCSGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYG 383

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L EYGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+
Sbjct: 384 GDRARKTNLVEYGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELMQSEGIVVEQV 443

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGL+DP +E+R +  Q++D+ +EI L  ++  R L+T LTKRMAE+LTEYL   N++
Sbjct: 444 IRPTGLLDPIIEVRPSHNQIDDLMEEIQLRIERNERTLITTLTKRMAEELTEYLLNNNVK 503

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
             Y+HS+V TLER+ I+ DLR G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 504 CNYIHSDVDTLERVRIMSDLREGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSH 563

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE- 727
            SL QT GRAARNVN  VI+YAD IT+S+QL IDET RRREKQL++N++H I PQ +K+ 
Sbjct: 564 RSLTQTAGRAARNVNGMVIMYADKITESMQLTIDETNRRREKQLKYNEEHGITPQQIKKA 623

Query: 728 --------------------KIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSL 767
                               K+        +E  +T+ ++ D     +S+ + +  ++  
Sbjct: 624 KSLNVFAGTEGFAESGTGKEKLSGNAPRPYVEQESTSMLAADPIVQYMSRNQLEKSIERT 683

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +K M  AA  L+F EAA+ RDE+ +++ 
Sbjct: 684 KKLMQEAAKKLDFIEAAQYRDEVLKMEE 711


>gi|163752020|ref|ZP_02159229.1| excinuclease ABC subunit B [Shewanella benthica KT99]
 gi|161328072|gb|EDP99241.1| excinuclease ABC subunit B [Shewanella benthica KT99]
          Length = 637

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/633 (55%), Positives = 464/633 (73%), Gaps = 6/633 (0%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
            LLGVTGSGKTFT+A VI+ + RP I+MAPNK LAAQLY E K FFPHNAVEYFVSYYDY
Sbjct: 3   TLLGVTGSGKTFTIANVIKQIGRPTIIMAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDY 62

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           YQPEAYVP T+T+IEK++S+N  I++MR SAT++LLER D ++++SVS IYG+G  +SY 
Sbjct: 63  YQPEAYVPSTNTFIEKDASVNAHIEQMRLSATKALLERKDVVLIASVSAIYGLGDPKSYL 122

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           +M++ L+ GD + Q+++L  L + QY R DI + RGTFRV G+ I+IFP+  +  A RV 
Sbjct: 123 KMLLHLRQGDFMGQRDILLRLSELQYTRNDISLERGTFRVRGEVIDIFPADSDKHAIRVE 182

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE +S F PLTG+ I+ +  I +Y  SHYVTPR  +  A + IK+EL  R  +L 
Sbjct: 183 LFDDEIERLSMFDPLTGRIIKRIARISVYPKSHYVTPREKIVAATEEIKKELIERKQQLL 242

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
              +L+EAQR+ +R+ YDLEM+   G C  IENYSRYL+GR  G+ PPTL +Y+P+D LL
Sbjct: 243 DNNKLVEAQRISERVQYDLEMMVELGYCSGIENYSRYLSGRATGKGPPTLLDYLPDDGLL 302

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +DESHVT+PQI  MY+GD  RK  L EYGFRLPS +DNRPL+FEE+  L P TI VSAT
Sbjct: 303 IIDESHVTVPQIGAMYKGDRSRKLNLVEYGFRLPSALDNRPLKFEEFEDLMPQTIFVSAT 362

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
           P  +E+++C G I EQ++RPTGL+DP VE+R   TQ++D+  +I    +   R+L+T LT
Sbjct: 363 PSQYEIDKCDGEIAEQVVRPTGLLDPEVEVRPVGTQIDDLLSQIGKRIKVNERVLVTTLT 422

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           KRM+EDL+EYL E  I+VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE 
Sbjct: 423 KRMSEDLSEYLDEHGIKVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEV 482

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
            LV ILDADKEGFLRS+ SLIQT+GRAARN+N KVILYAD ITKS+  A+ ET RRR+ Q
Sbjct: 483 SLVCILDADKEGFLRSERSLIQTMGRAARNINGKVILYADRITKSMAAAMGETDRRRKMQ 542

Query: 712 LEHNKKHNINPQSVKEKIMEVI-----DPILLEDAATTNISID-AQQLSLSKKKGKAHLK 765
            ++N  + I P  V +KI +V+     D  +L D ++ N++ + A+ +          + 
Sbjct: 543 HQYNLDNGITPTGVVKKITDVMDVGERDKGILGDYSSLNVAENRAKYVVQDAASISHQID 602

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           +L KQMH  A NL FE+AA +RD++ +L+ +  
Sbjct: 603 ALEKQMHEHAKNLEFEQAAAVRDQVLKLRDAFI 635


>gi|299140557|ref|ZP_07033695.1| excinuclease ABC subunit B [Prevotella oris C735]
 gi|298577523|gb|EFI49391.1| excinuclease ABC subunit B [Prevotella oris C735]
          Length = 682

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/677 (48%), Positives = 456/677 (67%), Gaps = 21/677 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL +GI      Q+LLGVTGSGKTFT+A VI    +P ++++
Sbjct: 3   FKLTSKYSPTGDQPEAIEQLTEGIKEGIPAQVLLGVTGSGKTFTVANVIANANKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPDNAVEYYVSYYDYYQPEAYLPTSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            A  +LL  R D IVVSSVSCIYG+G   +  + I+++K G ++++ E L  LV   Y R
Sbjct: 123 GAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQESIIKIKRGQTLDRNEFLRKLVDALYIR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RGTFRV GD+++I  ++ +++  RV+ + ++I+ I E    T   +   ET +I
Sbjct: 183 NDIDLQRGTFRVKGDTVDISMAYSDNI-LRVTWWDDEIDCIEEVDSTTFHSLERFETYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  R+      G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTEQAIRMIQDDLTERVEYFNSIGDNIKAQRVKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PGE P  L ++ P+D L+ +DESHV++PQI+ MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRQPGERPYCLLDFFPKDYLMVIDESHVSVPQINAMYGGDRARKQNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE++ L    I VSATP  +E+E+ +G+IVEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLRFEEFHSLINQIIYVSATPAKYEIEEAEGVIVEQIIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ DEI     +  R+L+T LTKRMAE+LTEYL    I+  Y+HS+V TL
Sbjct: 422 EVRPSENQIDDLMDEILTRIHRQERVLVTTLTKRMAEELTEYLLNHEIKANYIHSDVATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIMNDLRAGVFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI+YADTIT+S+Q  IDET RRR  QL++N+ H+I P+ +K++I   +  + +E
Sbjct: 542 RNVNGKVIMYADTITESMQKTIDETARRRSIQLKYNEDHHITPKQIKKQIGSSLASLSVE 601

Query: 740 DAATTNI-------------------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
                +                    + D     +SK + +  + +    M  AA +L+F
Sbjct: 602 SNDRKDAVTQNGKYPGIYLEPESGAFAADPIVKRMSKAELEKSIANTTALMKQAAKDLDF 661

Query: 781 EEAARIRDEIKRLKSSP 797
            +AA+ RDEI RL+   
Sbjct: 662 IQAAQYRDEIIRLQEQL 678


>gi|297170618|gb|ADI21644.1| helicase subunit of the DNA excision repair complex [uncultured
           myxobacterium HF0130_06F04]
          Length = 666

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/651 (55%), Positives = 484/651 (74%), Gaps = 4/651 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +  ++ P+GDQP+A+  L+ G  + +  Q+LLGVTGSGKTFT+A  I  +Q P +V+
Sbjct: 9   PFILCAEFAPAGDQPSALESLVPGFAAPKSHQVLLGVTGSGKTFTVASAISQLQIPTLVI 68

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPEAYVP TDT+I+K+++IN+ IDRMR
Sbjct: 69  AHNKTLAAQLYEEFKSFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIDKDATINDAIDRMR 128

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT++L ERND I+VSSVSCIYG+GS E+Y  M ++L +GD +++ E+L  L   Q++R
Sbjct: 129 HSATQALFERNDVIIVSSVSCIYGLGSAEAYYGMHLKLNVGDLIDRDEVLLKLANIQFER 188

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RGTFRV GD +E+FP+H  + A+R+  FG++IE I+   PL G KIR+V+ + I
Sbjct: 189 NDTDFHRGTFRVRGDVVEVFPAHQFEQAYRIEWFGDEIESIAVVDPLRGVKIRDVDKVAI 248

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SHYV    + + A   I++EL+ RLI+L KE +L+EAQRLEQR  +DLEM+E  G C
Sbjct: 249 FPTSHYVVTPESRDRATNAIRDELRERLIQLRKENKLVEAQRLEQRTLFDLEMIEEMGYC 308

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LTGR  G PPPTL +Y+ ++ LL +DESH T+PQ+  MYRGD  RK  L  
Sbjct: 309 TGIENYSRHLTGRPSGLPPPTLVDYLGKEFLLVIDESHQTVPQLGAMYRGDRARKENLVN 368

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+  L    + VSATPG +ELE  QG+IVEQIIRPTGL+DP +
Sbjct: 369 FGFRLPSALDNRPLQFEEFRKLTDRVLYVSATPGDFELEDTQGVIVEQIIRPTGLIDPQI 428

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           +IR    QV+D+ +EI +   +  R+L+TVLTKRMAEDLTEY  +  +RVRY+HS++ TL
Sbjct: 429 DIRPVNNQVDDLLEEIRVRESRQERVLVTVLTKRMAEDLTEYYADVGVRVRYLHSDIDTL 488

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERI++I DLR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAA
Sbjct: 489 ERIQVIHDLRAGQFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSDRSLIQTIGRAA 548

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           R+V  K ILYAD +T+SIQ A+DET RRR+KQ  +N+ +NI P++V+ K+++       +
Sbjct: 549 RHVEGKAILYADRMTQSIQRAVDETVRRRQKQETYNQDNNITPKTVQRKLLQF--KAGED 606

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            A TT+ SID   +     K    +++LRK+M   A++L FE+AA +RD++
Sbjct: 607 PADTTSPSIDPTHIE--PDKLPKEIEALRKKMLDYAESLEFEKAAELRDQV 655


>gi|328944098|ref|ZP_08241563.1| UvrABC system protein B [Atopobium vaginae DSM 15829]
 gi|327492067|gb|EGF23841.1| UvrABC system protein B [Atopobium vaginae DSM 15829]
          Length = 760

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/729 (48%), Positives = 480/729 (65%), Gaps = 40/729 (5%)

Query: 114 NPLLKNGKIWTPHRSWSIN----NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSRE 168
             L+  G++ + +  +        HSK    FQ+  D+ P GDQP AI  L KG+   + 
Sbjct: 10  TVLILKGRMMSAYNHFGAELVRFGHSKQQQPFQVVADFAPKGDQPRAINALTKGVMQDKL 69

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q LLGVTGSGKTFTMA +IE  Q+  +++ PNK LAAQ+ SE K  FPHNAV YFVSY
Sbjct: 70  RYQTLLGVTGSGKTFTMANLIEQTQKTTLIIEPNKTLAAQVASEMKTLFPHNAVVYFVSY 129

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAY+P+TDTYIEK+SSINE+++++RH  T SLL R D IVV+SVSCIYGIGS +
Sbjct: 130 YDYYQPEAYIPQTDTYIEKDSSINEEVEKLRHQTTSSLLSRRDVIVVASVSCIYGIGSPQ 189

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            Y+ +   +     +E+ + + SL+  QY R D+ +IRGTFRV GD +++F  + E    
Sbjct: 190 DYAGLAPTIDKNTPLERDDFIRSLIDIQYDRNDVDLIRGTFRVRGDCVDVFTPYGE-HPI 248

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           RVS FG++IE I+EF  +TG  +   + + I+  +HYV+ RP +N A+  I++EL+ R+ 
Sbjct: 249 RVSFFGDEIEMIAEFDEVTGDTLSQYDALPIWPATHYVSARPKINHAILTIRDELEARVQ 308

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           EL+    LLEAQRL+QR +YDLEMLET G C  IENYSR+L GR PGE P TL +Y PED
Sbjct: 309 ELKAHNMLLEAQRLQQRCSYDLEMLETMGFCSGIENYSRHLDGRKPGEAPYTLIDYFPED 368

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
            L  +DESHV++PQI GMY GD  RK TL ++GFRLP  +DNRPLR++E+    P  + V
Sbjct: 369 MLCIIDESHVSVPQIRGMYEGDRSRKITLVDHGFRLPCALDNRPLRYDEFEQRIPQFVFV 428

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG +EL   Q  +VEQ+IRPTGL+DP VEIR  R Q++D+ DEI     +  R+L+T
Sbjct: 429 SATPGDYELSVSQN-VVEQVIRPTGLLDPRVEIRPTRGQIDDLADEIRTRVTKHERVLVT 487

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
            LTK MAEDLTE+L +   +V YMHS+  TL+RI+IIR LR G  DVLVGINLLREGLDI
Sbjct: 488 TLTKHMAEDLTEHLLDEGFKVNYMHSDTATLDRIDIIRALRTGTLDVLVGINLLREGLDI 547

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PE  LVAILDADKEGFLR+K SLIQT+GRAARN    VI+YAD +T S+Q+A+DET RRR
Sbjct: 548 PEVSLVAILDADKEGFLRNKRSLIQTMGRAARNAAGSVIMYADRMTDSMQIAVDETKRRR 607

Query: 709 EKQLEHNKKHNINPQSVKEKIMEV----------IDPILLED------------------ 740
             Q+ +N +H+I PQ++K+ +++V          +D    +D                  
Sbjct: 608 TLQMRYNAQHHIVPQTIKKSMVDVTSFIQAAHETLDSKQRKDGVFYTASGTLSDNNETHQ 667

Query: 741 -----AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                   +   + +    + K+     L +L+ +M  A+ +++FE AA++RD+I  ++S
Sbjct: 668 PSKSSGENSATQLCSSLEGMPKEDVAKILGALQDEMLAASASMDFERAAKLRDQIVEVQS 727

Query: 796 SPYFQGLDD 804
                  DD
Sbjct: 728 VLEGLSADD 736


>gi|315186299|gb|EFU20060.1| Excinuclease ABC subunit B [Spirochaeta thermophila DSM 6578]
          Length = 661

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/661 (51%), Positives = 466/661 (70%), Gaps = 5/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F+++  + P+GDQ  AIA L +G+    + Q L GVTGSGKTFTMAK++E +Q P +
Sbjct: 1   MSGFRVEAPFGPAGDQGKAIALLSEGVKKGYRYQTLKGVTGSGKTFTMAKIVEEVQLPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYV   D YIEK++SINE+IDR
Sbjct: 61  VISHNKTLAAQLYREFKEFFPHNAVEYFVSYYDYYQPEAYVASKDLYIEKDASINEEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SL+ER D IVV++VSCIYG+G+ E + +M V++ +G  ++   L   LV  QY
Sbjct: 121 LRLSATASLMERPDVIVVATVSCIYGLGNPEHFREMRVRIDVGQRLDLGMLKQQLVSLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D  + RGTFRV G+ ++I+P++LE V +RV +  +++  I   +PLT + +   +++
Sbjct: 181 ERNDAVLTRGTFRVRGEIVDIYPAYLEHV-YRVELDWDEVVSIKVVHPLTLEVLDERKSL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+V P   + +A++ I+EEL  R  EL  + +L+EAQRL+ R  YDLEMLE  G
Sbjct: 240 FVYPAKHFVLPEEQVRSAIQGIREELDERYRELLSQNKLVEAQRLKARTEYDLEMLEEMG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L+GR PG+ P  L +Y P+  L+F+DESHVT+PQ+  MY GD  RK +L
Sbjct: 300 YCSGIENYSRHLSGRKPGQRPAVLLDYFPDRFLVFIDESHVTLPQLKAMYEGDRSRKLSL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPLR+EE+  + P  I VSATP   EL +    +VEQ+IRPTGL+DP
Sbjct: 360 VEYGFRLPSALDNRPLRYEEFESIVPQVIYVSATPEEEELSKS-SQVVEQVIRPTGLLDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++D+Y EI    ++G R+L+T LTK+MAEDLT+YL    +RVRY+H+EV+
Sbjct: 419 EVEVRPTEGQIDDLYAEIRKRVEKGQRVLVTTLTKKMAEDLTDYLQSLGLRVRYLHAEVE 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+E++RDLR G+FDVLVGINLLREGLD+PE  LVAILDADK GFLRS TSLIQ +GR
Sbjct: 479 TIERVELLRDLRAGEFDVLVGINLLREGLDLPEVALVAILDADKIGFLRSATSLIQIMGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   KVI+YAD +T +++ AI+ET RRR  Q  +N++H I PQ++++ + ++++  +
Sbjct: 539 AARNAEGKVIMYADRVTDAMREAIEETRRRRTIQEAYNREHGITPQTIQKSVRDILERRM 598

Query: 738 LEDAATTNISIDA---QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                     I+        L   + K  ++ L K+M   A NL FE AA IRDEI RLK
Sbjct: 599 KVKEEVERKEIEVLVHGYNILVPSERKKLIQRLEKEMLERAKNLEFEMAAVIRDEIARLK 658

Query: 795 S 795
            
Sbjct: 659 E 659


>gi|223982821|ref|ZP_03633045.1| hypothetical protein HOLDEFILI_00319 [Holdemania filiformis DSM
           12042]
 gi|223965220|gb|EEF69508.1| hypothetical protein HOLDEFILI_00319 [Holdemania filiformis DSM
           12042]
          Length = 659

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/657 (51%), Positives = 454/657 (69%), Gaps = 3/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AI +L+ G+ + +K Q+LLG TG+GKTFT+  VIE + RP +V A
Sbjct: 6   FQLVSKYKPTGDQPGAIDKLVAGLAAGKKEQVLLGATGTGKTFTIGNVIERVNRPTLVFA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK  FPHN VEYFVS +DYYQPEAY+P+TDTYIEK +  N+++D +R 
Sbjct: 66  HNKTLAGQLYSEFKELFPHNRVEYFVSNFDYYQPEAYMPKTDTYIEKNAMTNDELDMLRM 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +A  S+LER D I+V+SV+CIY       Y  M   +++GD +++ +LL  LV +QYKR 
Sbjct: 126 AAVNSVLERRDTIIVASVACIYASSDPNQYRDMFFTIRVGDHIDRNDLLRKLVDRQYKRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD+IE+   H +    R+ MF ++IE I E  PLTG+         ++
Sbjct: 186 DMDRARGTFRVRGDTIEVNMGHTDTFMLRIEMFDDEIERICEVDPLTGKLQNAYTVYNVF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S Y  P+  +  A + I+EEL++RL EL+++G+L+E QRLEQR  YDLE L   G C 
Sbjct: 246 PASGYARPKDQIERACQEIEEELELRLAELDRQGKLVEKQRLEQRCRYDLEALREFGVCP 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS ++ GR  G+ P  LF+Y P+D LL VDESHV++PQI GMY GD  RK TL EY
Sbjct: 306 GIENYSSHIDGRPAGQRPWNLFDYFPKDFLLVVDESHVSLPQIRGMYNGDRARKETLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP+RFEE+  L    I VSATPG++ELE+  G +VEQIIRPTGL+DP + 
Sbjct: 366 GFRLPSALDNRPMRFEEFETLVNQAIYVSATPGNYELEKVHGEVVEQIIRPTGLLDPEIT 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q++D+ DEI+       R+L+T LT +MAEDLT+YL + +++V Y+H E  TLE
Sbjct: 426 VRPTRGQIDDLLDEIHHCIAANERVLITTLTVKMAEDLTDYLKKNDLKVAYLHHETLTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E IRDLR GK+DVLVGINLLREG+DIPE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 486 RTETIRDLRRGKYDVLVGINLLREGIDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + +VI+Y D +T S++ AI+ET RRR  Q+ +N++H+I P ++ + I E I     ++
Sbjct: 546 NAHGRVIMYGDKMTDSMKKAIEETNRRRAIQIAYNEEHHITPTTIVKDIGEAIHGKETQE 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            A   +   ++       + +  + +L K+M  AA  L+FE AA +RD +  LK++ 
Sbjct: 606 MAARYMKKKSKLGKK---EQQKLIDNLEKEMKDAARVLDFERAAELRDMLLELKATL 659


>gi|295094304|emb|CBK83395.1| excinuclease ABC, B subunit [Coprococcus sp. ART55/1]
          Length = 662

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/660 (52%), Positives = 474/660 (71%), Gaps = 4/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI +L+KG     + + LLGVTGSGKTFTMA VI+ + +P +
Sbjct: 1   MDHFELVSEYKPTGDQPEAIEKLVKGFQEGNQFETLLGVTGSGKTFTMANVIQQLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYV  TDTYI K+SSIN+ IDR
Sbjct: 61  ILAHNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVASTDTYIAKDSSINDDIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHSAT +L++R D IVV+SVSCIYGIG  + Y   ++  ++G   ++ +++  L   QY
Sbjct: 121 MRHSATAALIDRKDVIVVASVSCIYGIGDPDEYRNQMLSFRVGMIKDRDQVIDELTDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+ + RGTFRV GD +EI P    D   R+  FG++I+ I+EF PLTG+  R++   
Sbjct: 181 DRNDMDLQRGTFRVRGDVLEIIPVSTFDDGIRIEFFGDEIDRITEFDPLTGEGKRDLTYT 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++  SHYV  +  +  A+K I+ ELK R+   + + +L+EAQR+E+R  +D+EM+  TG
Sbjct: 241 CLFPASHYVVGQEKMEKALKRIEAELKDRVAYFKSKDKLIEAQRIEERTNFDMEMMRETG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYS  L GR+ GE P TL ++  +D LL +DESH+T+PQ+  MY GD  RK  L
Sbjct: 301 FCSGIENYSGPLAGRSAGETPSTLLDFFDDDFLLIIDESHMTVPQVGAMYSGDRSRKMNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL F E+       + VSATPG +E E  Q ++ EQIIRPTGL+DP
Sbjct: 361 VDYGFRLPSALDNRPLNFSEFEQKLDQVMFVSATPGKYEEEH-QMLMAEQIIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           PVE+R    Q++D+  E+    +QG ++L+T LTKRMAEDLT Y+ + +I+V+Y+HS++ 
Sbjct: 420 PVEVRPVEGQIDDLLKEVRKETEQGHKVLVTTLTKRMAEDLTSYMRDNDIKVKYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EI+RDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 480 TMERVEIVRDLRLGVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+  VI+YADTIT S++ A+DET+RRRE Q ++N++H I P+++++ I ++I   +
Sbjct: 540 AARNVDGHVIMYADTITGSMKYALDETSRRREIQQKYNEEHGITPKTIEKSIRDLITIEV 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            ++        D    S++KK+ +  +  L K+M++AA +LNFE AA IRD++K  K++ 
Sbjct: 600 KKEELPDE---DKDAESMTKKELQKVIAKLTKKMNMAAADLNFEVAAEIRDQLKVYKAAL 656


>gi|325955516|ref|YP_004239176.1| UvrABC system protein B [Weeksella virosa DSM 16922]
 gi|323438134|gb|ADX68598.1| UvrABC system protein B [Weeksella virosa DSM 16922]
          Length = 662

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/661 (50%), Positives = 460/661 (69%), Gaps = 9/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ + P+GDQP AI +L +G+   +K Q LLGVTGSGKTFT+A V+  +QRP +V+A
Sbjct: 3   FEIKSTFEPTGDQPQAIKKLAQGVLDGDKYQTLLGVTGSGKTFTIANVVTEIQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NA+EYFVSYYDYYQPEAY+P + TYIEK+ SINE+I+++R 
Sbjct: 63  HNKTLAAQLYMEFKEFFPDNAIEYFVSYYDYYQPEAYLPSSGTYIEKDLSINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D +VV+SVSC+YGIG+   + + ++ ++ G  + +  LL  LV+  Y R
Sbjct: 123 STTSSLLSGRRDILVVASVSCLYGIGNPTEFHKNVISIEQGQIISRTHLLHKLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +   +RG FR+ GD+I+I+P++ +D   R+S FG+++EEIS F   TG+ I  +E I I
Sbjct: 183 TEGAFLRGNFRIKGDTIDIYPAYADD-GIRLSYFGDEVEEISIFDIETGKTITKLEKINI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT + TLN A+  I+ +L  ++    + G+ LEA+RL++R  +DLEM++  G C
Sbjct: 242 YPANLFVTSKETLNDAIHNIQLDLGKQVDYFIEIGKTLEAKRLKERTEFDLEMIKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ +DESHVT+ Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPDDYLMVIDESHVTVSQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +ELE+ +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFESLQNQVIYVSATPAKYELEKSEGVVVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R ++ Q++D+ +EI        R+L+T LTKRMAE+LT++L +  IR  Y+HS++ TL
Sbjct: 422 EVRPSQNQMDDLMEEIQKRVDLDERVLVTTLTKRMAEELTKFLVKYGIRTNYIHSDIDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVKIMADLRAGLFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI------MEVI 733
           RNVN   I+YAD IT S+Q  IDET RRRE Q ++N +H   PQ + +KI       E  
Sbjct: 542 RNVNGLAIMYADKITDSMQQTIDETNRRREIQHQYNIEHGKTPQPLHKKIISLNKQAESF 601

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +    E       + +  +L  + ++ +  ++ L K M  AA NL+F +AA +RD+I  L
Sbjct: 602 ELNPYEQKHLIAEAAENTELY-TSEEKQQQIEKLTKAMEKAAKNLDFIQAASLRDQINAL 660

Query: 794 K 794
           K
Sbjct: 661 K 661


>gi|225351877|ref|ZP_03742900.1| hypothetical protein BIFPSEUDO_03479 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157124|gb|EEG70463.1| hypothetical protein BIFPSEUDO_03479 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 711

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/694 (50%), Positives = 466/694 (67%), Gaps = 31/694 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N  +    F +++ Y PSGDQP AI +L + I + E   +L+G TG+GKT T A +IE +
Sbjct: 12  NIERTNKPFVVKSPYKPSGDQPKAIEELAERIENGENDVVLMGATGTGKTATTAWLIERL 71

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN
Sbjct: 72  QRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNIN 131

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ++R+RH+AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ L+ G  +++ +LL + 
Sbjct: 132 DDVERLRHAATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLEEGQQIDRDDLLRTF 191

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I 
Sbjct: 192 VAMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIG 250

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
               + I+  SHYV     +  A+  I++EL  R  EL K+G+ LEAQRL  R TYDLEM
Sbjct: 251 RQSQVHIFPASHYVAGPQRMERALSTIQQELDQRTAELRKQGKELEAQRLTMRTTYDLEM 310

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G C  +ENYSR+  GR PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  
Sbjct: 311 LSQVGVCSGVENYSRHFDGREPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDAS 370

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPT
Sbjct: 371 RKRTLVEHGFRLPSAMDNRPLKWPEFLERVGQTVYLSATPGDYELGLSDG-VVEQIIRPT 429

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +++R    Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+
Sbjct: 430 GLVDPQIDVRPVDGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYL 489

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 490 HSDVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLI 549

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+  VI+YAD IT+++  AIDET RRR+ Q+ +NK+H I+P+ + +KI +V
Sbjct: 550 QTIGRAARNVSGTVIMYADDITEAMHKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDV 609

Query: 733 IDPILLEDAATTNI-----------------------------SIDAQQLSLSKKKGKAH 763
            D +  ED  T  +                               +  +  L  +     
Sbjct: 610 NDMLAKEDVDTQTLLGTGYRNEGKAGNSHLGVPATSKEESDRRHEEILKAGLPAQDLADL 669

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L +QM  AA+ L FE AAR+RDEI+ LK   
Sbjct: 670 IRQLSEQMRAAAEQLQFELAARLRDEIRDLKKEL 703


>gi|317476249|ref|ZP_07935500.1| excinuclease ABC [Bacteroides eggerthii 1_2_48FAA]
 gi|316907660|gb|EFV29363.1| excinuclease ABC [Bacteroides eggerthii 1_2_48FAA]
          Length = 718

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/688 (48%), Positives = 470/688 (68%), Gaps = 23/688 (3%)

Query: 130 SINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI 189
           S+ ++  ++  F++ + YHP+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI
Sbjct: 25  SLPDNPDEMNKFELTSAYHPTGDQPEAIAQLTEGVREGVPAQTLLGVTGSGKTFTIANVI 84

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
             + +P ++++ NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ 
Sbjct: 85  ANINKPTLILSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDL 144

Query: 250 SINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           +IN++ID++R +AT +LL  R D +VVSSVSCIYG+G+   +   +++++ G +  +   
Sbjct: 145 AINDEIDKLRLAATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQGKNYSRNVF 204

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV   Y R DI + RG FRV GD+++I+ ++ +++  R+  +G++I+ I E  P++G
Sbjct: 205 LRRLVDSLYVRNDIDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEIDSIEEVDPVSG 263

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             I   +  KIY  + ++T +     A+  I+++L  ++   E EGR  EA+RL++R+TY
Sbjct: 264 VMIARFDAYKIYPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAKRLQERVTY 323

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G C  IENYSRY  GR  G  P  L ++ PED L+ +DESHV++PQI  MY 
Sbjct: 324 DMEMMRELGHCSGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYG 383

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L EYGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+
Sbjct: 384 GDRARKTNLVEYGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELMQSEGIVVEQV 443

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGL+DP +E+R +  Q++D+ +EI L  ++  R L+T LTKRMAE+LTEYL   N++
Sbjct: 444 IRPTGLLDPIIEVRPSHNQIDDLMEEIQLRIERNERTLITTLTKRMAEELTEYLLNNNVK 503

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
             Y+HS+V TLER+ I+ DLR G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 504 CNYIHSDVDTLERVRIMSDLREGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSH 563

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE- 727
            SL QT GRAARNVN  VI+YAD IT+S+QL IDET RRREKQL++N++H I PQ +K+ 
Sbjct: 564 RSLTQTAGRAARNVNGMVIMYADKITESMQLTIDETNRRREKQLKYNEEHGITPQQIKKA 623

Query: 728 --------------------KIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSL 767
                               K+        +E  +T+ ++ D     +S+ + +  ++  
Sbjct: 624 KSLNVFAGTEGFAESGTGKEKLSGNAPRPYVEQESTSMLAADPIVQYMSRNQLEKSIERT 683

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +K M  AA  L+F EAA+ RDE+ +++ 
Sbjct: 684 KKLMQEAAKKLDFIEAAQYRDEVLKMEE 711


>gi|300775460|ref|ZP_07085322.1| excision endonuclease subunit UvrB [Chryseobacterium gleum ATCC
           35910]
 gi|300506200|gb|EFK37336.1| excision endonuclease subunit UvrB [Chryseobacterium gleum ATCC
           35910]
          Length = 663

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/662 (51%), Positives = 467/662 (70%), Gaps = 8/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q++Y P+GDQP AI +L +GI   EK Q LLGVTGSGKTFT+A VI+ +QRP +V+A
Sbjct: 3   FKLQSEYKPTGDQPQAIEKLTEGIEIGEKYQTLLGVTGSGKTFTVANVIQNVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEAY+  T TYIEK+ SINE+++++R 
Sbjct: 63  HNKTLAAQLFMEFKEFFPENAVEYFVSYYDYYQPEAYIATTGTYIEKDLSINEEVEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT SLL  R D ++V+SVSCIYGIG+   + + ++ + IG+ V +  LL SLV   Y R
Sbjct: 123 SATASLLSGRRDVLIVASVSCIYGIGNPTEFHKSLISIAIGEKVTRTALLHSLVNALYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD I++FP++ ++ A R+  FG++IE+I  F PLTG    N + I+I
Sbjct: 183 TLNEFQRGTFRVKGDVIDVFPAYADN-AIRIQFFGDEIEKIQSFDPLTGNVESNFDQIQI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT + TLN A++ I++++  ++       + LEA+RL++R   DLEM++  G C
Sbjct: 242 YPANLFVTSKETLNGAIREIQDDMVKQVDFFNSIEKPLEAKRLQERTELDLEMIKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ +DESHVT+PQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGRLPGSRPFCLIDYFPKDFLMVIDESHVTVPQVHAMYGGDRSRKEALVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  ++   I VSATP  +ELE+  G  +EQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEAMQNQVIYVSATPADYELEKTGGAYIEQIIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    Q++D+ +EI   A    R+L+T LTK+MAE+LT+Y  +  IR RY+HS+V+TL
Sbjct: 422 EVRPTLNQIDDLMEEIQKRADADERVLVTTLTKKMAEELTKYFTKFGIRTRYIHSDVETL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERI+I++DLRLG FDVL+G+NLLREGLD+PE  LVAILDADKEG LRS+ S+IQT+GRAA
Sbjct: 482 ERIQIMQDLRLGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGMLRSRRSMIQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----DP 735
           RNVN K I+YAD ITKS+Q  +DET  RR KQ+++N++H + P+++ +KI E +      
Sbjct: 542 RNVNGKAIMYADKITKSMQATLDETEYRRAKQMKYNEEHGLQPKALNKKISENLVGRSKD 601

Query: 736 ILLEDAATTNI--SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
              E      I   +   + S + +     +   +K+M  AA NL+F +AA++RDEI+ L
Sbjct: 602 FPDEKYTQKEILQKVAETKASYASEDIDKMIAQKQKEMEAAAKNLDFIKAAKLRDEIEAL 661

Query: 794 KS 795
           K+
Sbjct: 662 KA 663


>gi|212716119|ref|ZP_03324247.1| hypothetical protein BIFCAT_01034 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661486|gb|EEB22061.1| hypothetical protein BIFCAT_01034 [Bifidobacterium catenulatum DSM
           16992]
          Length = 711

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/694 (50%), Positives = 469/694 (67%), Gaps = 31/694 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N  +    F +++ Y PSGDQP AI +L + I + E   +L+G TG+GKT T A +IE +
Sbjct: 12  NIERVDKPFVVKSPYKPSGDQPKAIEELAERIENGENDVVLMGATGTGKTATTAWLIERL 71

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN
Sbjct: 72  QRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNIN 131

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ++R+RH+AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ L+ G  +++ +LL + 
Sbjct: 132 DDVERLRHAATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLEEGQQIDRDDLLRTF 191

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I 
Sbjct: 192 VAMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIG 250

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           +   + I+  SHYV     +  A+  I++EL  R  EL K+G+ LEAQRL  R TYDLEM
Sbjct: 251 HQSQVHIFPASHYVAGPQRMERALSTIQQELDQRTAELRKQGKELEAQRLTMRTTYDLEM 310

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G C  +ENYSR+  GR PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  
Sbjct: 311 LSQVGVCSGVENYSRHFDGREPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDAS 370

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPT
Sbjct: 371 RKRTLVEHGFRLPSAMDNRPLKWPEFQERVGQTVYLSATPGDYELGLSDG-VVEQIIRPT 429

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +++R    Q++D+  EI     +  R+L+T LTK+MAEDLT+YL ER I+V Y+
Sbjct: 430 GLVDPQIDVRPVDGQIDDLLAEIKDRVNRNERVLITTLTKKMAEDLTDYLLERGIKVEYL 489

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 490 HSDVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLI 549

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+  VI+YAD IT+++  AIDET RRR+ Q+ +NK+H I+P+ + +KI +V
Sbjct: 550 QTIGRAARNVSGTVIMYADDITEAMHKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDV 609

Query: 733 IDPILLEDAATTNI-----------------------------SIDAQQLSLSKKKGKAH 763
            D +  ED  T  +                               +  +  L  +     
Sbjct: 610 NDMLAKEDVDTQTLLGTGYRNADKAGNSHLGVPATSKEESDRRHEEILKAGLPAQDLADL 669

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L +QMH AA+ L FE AAR+RDEI+ LK   
Sbjct: 670 IRQLSEQMHTAAEQLQFELAARLRDEIRDLKKEL 703


>gi|28493262|ref|NP_787423.1| excinuclease ABC subunit B [Tropheryma whipplei str. Twist]
 gi|28476303|gb|AAO44392.1| excinuclease ABC subunit B [Tropheryma whipplei str. Twist]
          Length = 677

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/661 (49%), Positives = 457/661 (69%), Gaps = 3/661 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
            +F++  +Y PSGDQP AI +L   I S E   +LLG TG+GK+ T+A +IE + RP ++
Sbjct: 8   KYFRLAAEYDPSGDQPKAIGELSDRIESGETDIVLLGATGTGKSATIAWLIEKLARPTLI 67

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQL +EF+ FFP NAVEYFVSYYDYYQPEAYVP+TDT+IEK++S+N +++R+
Sbjct: 68  IAHNKTLAAQLANEFRKFFPDNAVEYFVSYYDYYQPEAYVPKTDTFIEKDASVNSEVERL 127

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH AT SLL R D IVV++VSCIYG+G+   Y +   +L++G  + Q+ LL    + QY 
Sbjct: 128 RHRATTSLLTRRDVIVVATVSCIYGLGAPSEYLKAGFRLEVGQKISQRVLLERFTQLQYN 187

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+G  RG FRV GD+IEI P + E+   R+ M+G++IE +   +P+TG  +     + 
Sbjct: 188 RNDVGFERGNFRVRGDTIEIIPVY-EEYTVRIEMWGDEIERVLCLHPVTGNVLSEQRGVL 246

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SHYVT    L  A+  I++EL+ RL   ++   LLEAQRLE R  YD+E++E  G 
Sbjct: 247 IFPASHYVTSSENLKRAIVDIRKELQQRLRYFKRNNSLLEAQRLETRTEYDIELMEQLGF 306

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR++ GR PGEPP  L +Y  +D L  +DESHVT+PQI  M+ GDF RK  L 
Sbjct: 307 CSGIENYSRHIDGRAPGEPPFCLLDYFDDDFLTVIDESHVTVPQIGSMHAGDFSRKKALV 366

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E GFRLPS +DNRPL F+E+       I +SATPG +EL +  G +VEQIIRPTGLVDP 
Sbjct: 367 ENGFRLPSAIDNRPLCFDEFRQRVGQVIYLSATPGKYELSKSDG-VVEQIIRPTGLVDPK 425

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + ++  + Q++D+ +EI        R+L+T LTKRMAE+LT++L E  + V Y+HS++ T
Sbjct: 426 ITVKPIKGQIDDLLEEIRKRKLLSERVLVTTLTKRMAEELTDFLSEAGVNVSYLHSDIDT 485

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L R+E++  LR+G+ DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS IQTIGRA
Sbjct: 486 LHRVELLTSLRMGRIDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSFIQTIGRA 545

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           AR+V+ +V +YAD +T+S+Q +IDET RRR  Q ++N+K  + P  +K+ + ++ + +  
Sbjct: 546 ARHVSGEVHMYADNMTESMQKSIDETNRRRRIQQDYNRKMGVTPVPIKKTVSDITEVLSR 605

Query: 739 EDAATTNISIDA-QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                    +D+     +  K+ K+H+KSL  +M++AA++L FEEAA +RDEI+ LK   
Sbjct: 606 PSRKIDCTILDSLPDPKIDGKQIKSHIKSLEAKMYMAAESLMFEEAAELRDEIQSLKEKF 665

Query: 798 Y 798
            
Sbjct: 666 L 666


>gi|291456498|ref|ZP_06595888.1| excinuclease ABC subunit B [Bifidobacterium breve DSM 20213]
 gi|291381775|gb|EFE89293.1| excinuclease ABC subunit B [Bifidobacterium breve DSM 20213]
          Length = 703

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/694 (50%), Positives = 466/694 (67%), Gaps = 31/694 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N  +    F +++ Y PSGDQP AI +L + I + E   +L+G TG+GKT T A +IE +
Sbjct: 4   NIERADKPFVVKSPYQPSGDQPQAITELSERIENGENDVVLMGATGTGKTATTAWLIEKL 63

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN
Sbjct: 64  QRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNIN 123

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ++R+RH AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK+G  + + +LL   
Sbjct: 124 DDVERLRHQATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKVGQEINRDDLLRQF 183

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG +I 
Sbjct: 184 VAMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRISTLHPLTGDEID 242

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
               + I+  SHYV     +  A+K I+EEL  RL EL K+G+ LEAQRL  R TYDLEM
Sbjct: 243 EENEVHIFPASHYVAGPERMERALKTIREELDERLAELRKQGKELEAQRLNMRTTYDLEM 302

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G C  +ENYSR+  GR  G PP TL ++ P+D LL +DESHVT+PQI  MY GD  
Sbjct: 303 LTQVGVCSGVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDAS 362

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPT
Sbjct: 363 RKRTLVEHGFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYELGLSDG-VVEQIIRPT 421

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP +++R  + Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+
Sbjct: 422 GLLDPKIDVRPVKGQIDDLLGEIKARVDRNERALVTTLTKKMAEDLTDYLLERGIKVEYL 481

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++R LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 482 HSDVDTLRRVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLI 541

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+  VI+YAD  T +++ AIDET RRR KQ+ +NK+H I+P+ + +KI +V
Sbjct: 542 QTIGRAARNVSGTVIMYADETTDAMRKAIDETDRRRAKQIAYNKEHGIDPKPLIKKISDV 601

Query: 733 IDPILLEDAATTNI-----------------------------SIDAQQLSLSKKKGKAH 763
            D +  ED  T  +                               +  +  L  +     
Sbjct: 602 NDMLAKEDVDTQTLLEGGYRNAGKAGNTHLGVPVLDPNEADKRHEEILKAGLPAQDLADL 661

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L +QMH AA+ L FE AAR+RDEI+ LK   
Sbjct: 662 IRQLSEQMHTAAEQLQFELAARLRDEIRDLKKEL 695


>gi|229817850|ref|ZP_04448132.1| hypothetical protein BIFANG_03136 [Bifidobacterium angulatum DSM
           20098]
 gi|229784750|gb|EEP20864.1| hypothetical protein BIFANG_03136 [Bifidobacterium angulatum DSM
           20098]
          Length = 703

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/694 (50%), Positives = 466/694 (67%), Gaps = 31/694 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N  +    F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +
Sbjct: 4   NIERTNKPFVVKSPYKPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERL 63

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN
Sbjct: 64  QRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNIN 123

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ++R+RH+AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ L  GD +E+ +LL + 
Sbjct: 124 DDVERLRHAATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLHEGDQIERDDLLRTF 183

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR DI   RG FRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I 
Sbjct: 184 VDMQYKRNDIAFTRGIFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIA 242

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           +   + I+  SHYV     +  A+K I+ EL  R+ EL+K+G+ LEAQRL  R TYDLEM
Sbjct: 243 HESEVHIFPASHYVAGPERMARALKSIRAELDDRVAELKKQGKDLEAQRLSMRTTYDLEM 302

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G C  +ENYSR+  GR PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  
Sbjct: 303 LTQVGVCSGVENYSRHFDGRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDAS 362

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPT
Sbjct: 363 RKRTLVEHGFRLPSAMDNRPLKWPEFQRRIGQTVYLSATPGDYELGLSDG-VVEQIIRPT 421

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +E+R    Q++D+  EI     +  R L+T LTK+MAEDLT+YL E  I+V Y+
Sbjct: 422 GLVDPKIEVRPIEGQIDDLLGEIKARVARNERALVTTLTKKMAEDLTDYLLEHGIKVEYL 481

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++R LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 482 HSDVDTLRRVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLI 541

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+  V++YAD IT+++  AIDET RRR+ Q+ +NK+H I+P+ + +KI +V
Sbjct: 542 QTIGRAARNVDGTVLMYADNITEAMHEAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDV 601

Query: 733 IDPILLEDAATTNI-----------------------------SIDAQQLSLSKKKGKAH 763
            D +  ED  T  +                               +  +  L  +     
Sbjct: 602 NDMLAKEDVDTQTLLEGGYRNAGKAGNTHLSVPTLDEDEANKRHEEILKAGLPAQDLADL 661

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L +QMH AA+ L FE AAR+RDEI+ LK   
Sbjct: 662 IRQLSEQMHTAAEQLQFELAARLRDEIRDLKKEL 695


>gi|289549151|ref|YP_003474139.1| excinuclease ABC subunit B [Thermocrinis albus DSM 14484]
 gi|289182768|gb|ADC90012.1| excinuclease ABC, B subunit [Thermocrinis albus DSM 14484]
          Length = 663

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/654 (50%), Positives = 449/654 (68%), Gaps = 3/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++TD  P+GDQP AI QLL+ +    K Q+LLG TG+GKTFT+A VI    +P +++ 
Sbjct: 7   FLLKTDLKPAGDQPKAIKQLLENLEKGVKEQVLLGATGTGKTFTIANVIAQYNKPTLIVV 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NKILAAQLY E K  FP NAVEYF+SYYDYYQPEAY+P  D YIEK++SINE ++R RH
Sbjct: 67  HNKILAAQLYRELKELFPDNAVEYFISYYDYYQPEAYIPEKDLYIEKDASINEILERYRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT S+LER D IVV+SVSCIYG+GS +SY  M + +++GD +   +L   LV+  Y+R 
Sbjct: 127 SATVSVLERRDVIVVASVSCIYGLGSPDSYYSMRIPIEVGDRISITKLTRKLVEIGYQRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I R  F V G+++EI PS  ED   R+  + +++E I     +    I +V  + ++
Sbjct: 187 DYSIKRAVFSVKGNALEIIPSDAEDRLVRIEFWDDEVESIKILDAINRHVIDSVNRVVLF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV PR  +  A+K I+++L  R+    K GR +EAQRL QR  +D+EM+   G C+
Sbjct: 247 PASHYVAPRDRIEEALKEIEKDLHERVEWFRKRGRHVEAQRLYQRTMHDIEMIRELGHCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY  GR PGEPP TL +Y P+D LL +DESHVT+PQI  MY GD  RK  L EY
Sbjct: 307 GIENYSRYFDGRKPGEPPFTLLDYFPKDFLLIIDESHVTLPQIRAMYNGDRSRKEKLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           G+RLPS +DNRPL F+E+       I VSATPG WELE+ +G +VEQI+RPTGL+DP VE
Sbjct: 367 GWRLPSALDNRPLTFQEFLERINQVIYVSATPGEWELERSKGAVVEQIVRPTGLLDPEVE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +RS + Q+ED+  EI +  ++G R L+   TKR+AE++ EYL +R I+ +YMHS+   +E
Sbjct: 427 VRSTQGQLEDLVKEIQIRKKRGERALVLTTTKRLAEEVAEYLNDRKIKAKYMHSDQDAIE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +II++LR G  D +VG+NLLREGLD+PE  LVAIL+ADKEGFLRS TSLIQTIGRAAR
Sbjct: 487 RAKIIKELREGSIDAIVGVNLLREGLDLPEVSLVAILEADKEGFLRSYTSLIQTIGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD IT S+Q AI+ET RRR  Q ++N++H I P+S+ + + E++    +E+
Sbjct: 547 NINGKAILYADRITPSMQRAIEETNRRRRIQQQYNQEHGITPKSITKPVKELL---AIEE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                +     +   +++     +  L K+M   A    FE+AA++RDEIK+L+
Sbjct: 604 LDYVKLPTHLPKGIKTEEDILEKIAKLEKEMWECAKRWEFEKAAQLRDEIKKLR 657


>gi|84489383|ref|YP_447615.1| excinuclease ABC subunit B [Methanosphaera stadtmanae DSM 3091]
 gi|121717291|sp|Q2NGT1|UVRB_METST RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|84372702|gb|ABC56972.1| UvrB [Methanosphaera stadtmanae DSM 3091]
          Length = 649

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/659 (52%), Positives = 453/659 (68%), Gaps = 10/659 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F + +DY P GDQP AI  L++      K Q L GVTGSGKTFTMA VIE + +P +
Sbjct: 1   MSKFNLYSDYKPLGDQPKAIKSLVEHYKDGIKEQTLEGVTGSGKTFTMANVIEQLDKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           VM+ NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYV +TDT+I+KES+INE+IDR
Sbjct: 61  VMSHNKTLAAQLYEEFKEFFPDNAVEYFVSYYDYYQPEAYVAQTDTFIDKESAINEEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT+SLL R+D IVVSSVSCIYGIGS E Y+Q  + L+    + ++++L  LVK QY
Sbjct: 121 LRHSATQSLLTRDDVIVVSSVSCIYGIGSPEDYAQFTLTLQTQQEISREDILKELVKMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI  IRG FRV GD IEIFP +  + A R+ ++G++I+ I +   L G  I  ++ +
Sbjct: 181 SRNDIEFIRGQFRVRGDVIEIFPINA-NYALRIELWGDEIDVIYKIDALKGDIIEELQKV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+   H+V  +    TA+  IK+ELK R+   +  G+ +EAQR+EQR  +D+EML+  G
Sbjct: 240 IIFPAKHFVIAKEKQETAIANIKKELKERVDTFKATGKYVEAQRIEQRTNFDMEMLQEIG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYS ++ GR  GE P +L  Y P+D L  +DESHVT+PQI GMY GD  RK  L
Sbjct: 300 YCSGIENYSMHMNGRKWGETPYSLLRYFPDDYLTIIDESHVTVPQIRGMYEGDRARKENL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  +NRPLRF+E+   +   + VSATP ++EL + +   VEQIIRPTGLVDP
Sbjct: 360 IQYGFRLPSAKENRPLRFDEFMRAQNQVLYVSATPAAFELGRSKNK-VEQIIRPTGLVDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              +R  + QV+D+  EI        R+L+T LTK+MAEDLT+Y  + N++ RY+HSE+ 
Sbjct: 419 EPIVRPIKNQVDDLLGEIRKCVDNNQRVLVTSLTKKMAEDLTDYYIKMNVKARYLHSEIS 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EII +LR G FD LVG+NLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGR
Sbjct: 479 TLERTEIIDELRRGDFDCLVGVNLLREGLDLPEVALVAILDADKEGFLRSQTSLIQTIGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN +VILYAD IT S++ A++ T  RR+ Q+ +N  HNI P+SV  K+ +      
Sbjct: 539 AARNVNGRVILYADNITDSVRNAVNITKHRRKIQIAYNNDHNITPRSVVRKLKD------ 592

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                   +    +  +++  +    +K L K+M  AA +LNFE+AA++RD I  LK  
Sbjct: 593 --KKIEEKVDDIQEIDNITTDEIDEIIKELEKEMKQAAKDLNFEKAAKLRDRIMELKEE 649


>gi|298372807|ref|ZP_06982797.1| excinuclease ABC subunit B [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275711|gb|EFI17262.1| excinuclease ABC subunit B [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 711

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/671 (48%), Positives = 447/671 (66%), Gaps = 13/671 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + + Y PSGDQP AI +L + +      Q LLGVTGSGKTFTMA VI  + RP +
Sbjct: 39  MNKFNLVSAYQPSGDQPQAIRELTEAVDKGVDYQTLLGVTGSGKTFTMANVIANVNRPTL 98

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +IN +I++
Sbjct: 99  IISHNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYLPATDTYIEKDLAINSEIEK 158

Query: 258 MRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +R SAT  LL  RND ++VSSVSC+YGIG+ E + +  + L +G ++ + + L SLV   
Sbjct: 159 LRLSATSQLLSGRNDIVIVSSVSCLYGIGNPEDFKKNTIPLAVGQNILRDDFLRSLVVAN 218

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R +I + RG FRV GD+++IFP++  D   RV  + NDI+ +    P TGQ I   ++
Sbjct: 219 YSRNEIDLNRGNFRVKGDTVDIFPAYA-DFILRVIFWDNDIDSLETLDPTTGQTIEVFDS 277

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y  + + T +  +N A+  I  +L  ++   ++  +  EA+RL++R+TYD+EM+   
Sbjct: 278 FNLYPATIFTTTQERINHALDLIALDLGKQVEFFKENNKPYEAKRLQERVTYDIEMIREV 337

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  +ENYSRY   R PG  P  +F+Y P+D L+FVDESHVTIPQI GM+ GD+ RK  
Sbjct: 338 GYCSGVENYSRYFDNRPPGSRPFCIFDYFPKDFLVFVDESHVTIPQIHGMFGGDYSRKKN 397

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLP+ +DNRPL+FEEW  L P  I VSATP  +EL +  G +VEQ++RPTGL+D
Sbjct: 398 LVEYGFRLPASIDNRPLKFEEWEALVPRAIFVSATPAEYELNKSHGTVVEQVVRPTGLLD 457

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R +  Q++++ +EI     +  R L+  LTKRMAE+L  YL +  IR  Y+HS++
Sbjct: 458 PEIEVRPSEYQIDNLMNEIVDRIDKQERTLVVTLTKRMAEELNRYLCQAGIRSAYIHSDI 517

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           +TL+R++I+ DLR G++DVLVG+NLLREGLD+P+  LVAILDADKEGFLR+  SL QT G
Sbjct: 518 ETLDRVKIMDDLRRGEYDVLVGVNLLREGLDLPQVSLVAILDADKEGFLRNHRSLTQTAG 577

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--- 733
           RAAR+VN KVI YAD IT S++L IDET RRR KQ  +N+KH+I P  V  +    +   
Sbjct: 578 RAARHVNGKVIFYADKITHSMRLTIDETNRRRAKQQAYNEKHHITPTQVVSQAQSSLWGK 637

Query: 734 --DPILLEDAATTNISIDAQQLSLS------KKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
                   D AT   + D  + ++S       +     +   R++M  AA ++ F EAA+
Sbjct: 638 TNRADYNADTATPPTATDGYEKNMSIIRAMEDRNIDKAIAYARRRMTEAARSMEFIEAAQ 697

Query: 786 IRDEIKRLKSS 796
            RDE+ RL+  
Sbjct: 698 WRDELLRLEQK 708


>gi|309791541|ref|ZP_07686040.1| excinuclease ABC subunit B [Oscillochloris trichoides DG6]
 gi|308226401|gb|EFO80130.1| excinuclease ABC subunit B [Oscillochloris trichoides DG6]
          Length = 668

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/667 (50%), Positives = 466/667 (69%), Gaps = 9/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q  Y P+GDQP AIAQL+ G+ +  + Q LLG TG+GKTF MA++ E  QRP +V+A
Sbjct: 3   FRVQAPYQPTGDQPQAIAQLVAGLQAGYRHQTLLGATGTGKTFVMAQIFEQAQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L +QL++EF++F P  AVE F+SYYD Y PEAYVP  D YIEKE+SINE+IDR+RH
Sbjct: 63  HNKTLVSQLWAEFRDFLPDAAVEMFISYYDEYTPEAYVPSKDLYIEKEASINEEIDRLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT++L  R D ++V+SVS I+G+GS + Y Q+++ ++ G+   + +LL  L+  Q++R 
Sbjct: 123 AATQALFTRRDVLIVASVSAIFGLGSPQDYGQVVIPIRSGEVRNRDKLLRQLIDLQFERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GD+++I P++ E  A R+  +G++IE I E  PLTG+ +     + IY
Sbjct: 183 DIDFHRGTFRVRGDTLDILPANSE-TAVRIEFWGDEIERIVEIDPLTGEILLTRTAVDIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT +  L  A+  I++EL  RL +LE  G+ LEA RL+QR  YDLEML   G C 
Sbjct: 242 PAKHFVTTKDKLAAAVLSIQDELGERLRDLEAAGKNLEAARLKQRTMYDLEMLGEVGYCS 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR+PG+ P TL +Y P+D LLF+DESH+++PQ+ GMY+GD  RK TL ++
Sbjct: 302 GIENYSRHMDGRSPGQTPWTLLDYFPDDFLLFIDESHISLPQVRGMYKGDRSRKETLVDF 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F+E+       I VSATPG +E EQ Q  IVEQIIRPTGLVDP +E
Sbjct: 362 GFRLPSALDNRPLQFDEFAEHVYQAIYVSATPGPYEREQSQQ-IVEQIIRPTGLVDPIIE 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R ++ Q++D+  EI L   +G R L+T LTKRMAEDL +YL E  +R  Y+H+++ TLE
Sbjct: 421 VRPSKGQIDDLVAEIRLRVTKGQRALVTTLTKRMAEDLADYLKEVGVRTMYLHADIDTLE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG +D +VGINLLREGLD+PE  L+AILDADKEG+LRS+TSLIQ IGRAAR
Sbjct: 481 RVEILRDLRLGVYDTVVGINLLREGLDLPEVSLIAILDADKEGYLRSETSLIQIIGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           ++  +VI+YADTITKS+  AI ET RRR+ Q+ HN +HNI P  + + + ++ D +    
Sbjct: 541 HLEGRVIMYADTITKSMDAAIRETQRRRDIQIAHNMRHNITPVGISKGVRDLSDRLRKMA 600

Query: 741 AATTNISIDAQQL-------SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                  + ++          L +++    +K L KQM  AA +L FE+AA +RD+I  L
Sbjct: 601 EERGEYQVQSRDDTAHAIVHELPREEIHKLIKDLEKQMKQAAKDLAFEKAAALRDQIMEL 660

Query: 794 KSSPYFQ 800
           + +    
Sbjct: 661 RKTLALD 667


>gi|120436638|ref|YP_862324.1| excinuclease ABC subunit B [Gramella forsetii KT0803]
 gi|117578788|emb|CAL67257.1| UvrABC system protein B [Gramella forsetii KT0803]
          Length = 667

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/663 (51%), Positives = 464/663 (69%), Gaps = 8/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P+GDQP AI QL+ GI   E+ Q LLGVTGSGKTFT+A VIE +Q+P +V+A
Sbjct: 3   FNIKSDYKPTGDQPNAIKQLVTGIDKNEQYQTLLGVTGSGKTFTVANVIEDVQKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEA++P + TYIEK+ SINE+I+++R 
Sbjct: 63  HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAFIPSSGTYIEKDLSINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IV++SVSC+YGIG+   + + +V ++    + + + L  LV+  Y R
Sbjct: 123 STTSSLLSGRRDVIVIASVSCLYGIGNPVEFRKNVVSIERDMEISRTKFLHRLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +     G FR+ GD++++FPS+ ++ A+R+  FG++IE+I  F P T   I   E + I
Sbjct: 183 TEAEFNHGNFRIKGDTVDVFPSYADN-AFRIHFFGDEIEDIEAFDPGTNDVIEKYERLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A++ I+++L  ++   +  G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLQGAIREIQDDLVKQVDYFQDIGKNLEAKRLDERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y PED L+ VDESHVTIPQ+  M+ GD  RK  L +
Sbjct: 302 SGIENYSRYLDGRMPGTRPFCLLDYFPEDYLMVVDESHVTIPQVHAMFGGDRSRKENLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL++ +G+ VEQ+IRPTGL+DP V
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQKSEGVYVEQVIRPTGLLDPIV 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +   +  RIL+T LTKRMAE+LT+YL   +IR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLIEEIQIRVDKDERILVTTLTKRMAEELTKYLTRIDIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVLVG+NLLREGLD+PE  LVAI+DADKEGFLRS  SL QTIGRAA
Sbjct: 482 ERVEIMQDLRKGIFDVLVGVNLLREGLDLPEVSLVAIIDADKEGFLRSNRSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK-----IMEVID 734
           R+V+ + ILYAD IT S+Q  ID+T  RR+KQ+++N ++NI P  + +K     I E +D
Sbjct: 542 RHVDGRAILYADKITNSMQKTIDQTEYRRQKQIDYNTENNITPTKLVKKFNNALIKEKLD 601

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            I   +      + + +   LSK + +  ++  RK M  AA  L+F +AAR+RDEIK L+
Sbjct: 602 -IYDHETRPDLKAAEEEAEYLSKPQMEKKVREKRKAMETAAKELDFMQAARLRDEIKMLQ 660

Query: 795 SSP 797
              
Sbjct: 661 EKI 663


>gi|332521822|ref|ZP_08398273.1| excinuclease ABC, B subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332042652|gb|EGI78853.1| excinuclease ABC, B subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 667

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/666 (50%), Positives = 466/666 (69%), Gaps = 12/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+++ P+GDQPAAI QL+ GI++ EK Q LLGVTGSGKTFT+AK +E++++P +V+A
Sbjct: 3   FKIQSEFSPTGDQPAAIKQLVDGINANEKYQTLLGVTGSGKTFTVAKFVESVKKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P +  YIEK+ SINE+I++MR 
Sbjct: 63  HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPTSGVYIEKDLSINEEIEKMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D +VV+SVSC+YGIG+   + + ++ +K    + + +LL  LV+  Y R
Sbjct: 123 STTSSLLSGRRDVLVVASVSCLYGIGNPIEFQKNVITIKRDQEISRTKLLHQLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +     G FR+ GD+++IFPS+ +D A+RV  FG++IE I +F   T + I   + + I
Sbjct: 183 TEADFKHGNFRIKGDTVDIFPSYADD-AFRVHFFGDEIEMIEQFNIQTNEVIDEYDRLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+K I+++L  +    +  G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLQGAIKEIQDDLVKQHDYFKDIGKHLEAKRLKERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ VDESHVT+ Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGRLPGTRPFCLLDYFPDDYLMVVDESHVTVSQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   + VSATP  +EL++  G+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVLYVSATPADYELQKTDGVYVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LT+YL   +IRVRY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLIEEIQVRVEKDERTLVTTLTKRMAEELTKYLSRIDIRVRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           R++N K I+YAD ITKS+Q  IDET  RR KQ+++N  +N+ P+++ + +  V+    + 
Sbjct: 542 RHLNGKAIMYADKITKSMQSTIDETEYRRAKQIKYNTDNNLTPKALNKSLDNVLSKNSVS 601

Query: 740 DAA---TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK----- 791
             +       + + +   L+K + +  ++  RK M  AA  L+F  AA++RDEIK     
Sbjct: 602 TYSYELEAARAAEPESEYLTKAELEKKIREKRKLMEKAAKALDFIIAAQLRDEIKVYQGK 661

Query: 792 --RLKS 795
              LK+
Sbjct: 662 LEELKA 667


>gi|311064144|ref|YP_003970869.1| excinuclease ABC subunit B [Bifidobacterium bifidum PRL2010]
 gi|310866463|gb|ADP35832.1| UvrB Excinuclease ABC subunit B [Bifidobacterium bifidum PRL2010]
          Length = 703

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/694 (50%), Positives = 470/694 (67%), Gaps = 31/694 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N  +    F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +
Sbjct: 4   NIERADKPFVVKSPYKPSGDQPQAIEELSTRIENGENDVVLMGATGTGKTATTAWLIERL 63

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN
Sbjct: 64  QRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNIN 123

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ++R+RH AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ L+ G  +++ +LL   
Sbjct: 124 DDVERLRHQATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLQEGQQIDRDQLLRKF 183

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I 
Sbjct: 184 VDMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVID 242

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           +  ++ I+  SHYV     +  A+K IKEEL  R+ EL+K+G+ LEAQRL  R TYDLEM
Sbjct: 243 HETSVHIFPASHYVAGPERMEHALKTIKEELDQRVAELKKQGKELEAQRLTMRTTYDLEM 302

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G C  +ENYSR+   R PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  
Sbjct: 303 LTQVGVCSGVENYSRHFDNRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDAS 362

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPT
Sbjct: 363 RKRTLVEHGFRLPSAMDNRPLKWPEFLDRVGQTVYLSATPGDYELGLSDG-VVEQIIRPT 421

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +++R  + QV+D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+
Sbjct: 422 GLVDPKIDVRPTKGQVDDLLAEIKDRVDKNERTLVTTLTKKMAEDLTDYLLERGIKVEYL 481

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 482 HSDVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLI 541

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+  VI+YAD  T +++ AIDET RRR +Q+ +NK+H I+P+ + +KI +V
Sbjct: 542 QTIGRAARNVSGTVIMYADETTDAMRKAIDETDRRRVRQIAYNKEHGIDPKPLIKKISDV 601

Query: 733 IDPILLEDAATTNI----------------------SIDAQ-------QLSLSKKKGKAH 763
            D +  ED  T  +                      + +A        +  L  +     
Sbjct: 602 NDMLAKEDVDTATLLEGGYRNAGKAGNTHLGVPSLDAAEADKRHEEILKAGLPAQDLADL 661

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L +QMH AA+ L FE AAR+RDEI+ LK   
Sbjct: 662 IRQLSEQMHTAAEQLQFELAARLRDEIRDLKKEL 695


>gi|306823048|ref|ZP_07456424.1| excision endonuclease subunit UvrB [Bifidobacterium dentium ATCC
           27679]
 gi|304553680|gb|EFM41591.1| excision endonuclease subunit UvrB [Bifidobacterium dentium ATCC
           27679]
          Length = 712

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/694 (50%), Positives = 465/694 (67%), Gaps = 31/694 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
              +    F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +
Sbjct: 13  EIERVDKPFVVKSPYRPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERL 72

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN
Sbjct: 73  QRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNIN 132

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ++R+RH+AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK G  +++ ELL   
Sbjct: 133 DDVERLRHAATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKEGQQIDRDELLRMF 192

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I 
Sbjct: 193 VSMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDHISTLHPLTGDVID 251

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           +   + I+  SHYV     +  A+  IKEEL  R+ EL K+G+ LEAQRL  R TYDLEM
Sbjct: 252 HEPQVHIFPASHYVAGPERMERALATIKEELDQRVAELRKQGKELEAQRLTMRTTYDLEM 311

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G C  +ENYSR+  GR PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  
Sbjct: 312 LTQVGVCSGVENYSRHFDGREPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDAS 371

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPT
Sbjct: 372 RKRTLVEHGFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYELGLSDG-VVEQIIRPT 430

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +++R    Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+
Sbjct: 431 GLVDPKIDVRPVDGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYL 490

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 491 HSDVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLI 550

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+  VI+YAD +T+++  AIDET RRR+ Q+ +NK+H I+P+ + +KI +V
Sbjct: 551 QTIGRAARNVSGTVIMYADDVTEAMHKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDV 610

Query: 733 IDPILLEDAATTNI-----------------------------SIDAQQLSLSKKKGKAH 763
            D +  ED  T  +                               +  +  L  +     
Sbjct: 611 NDMLAKEDVDTQTLLGTGYRNADKAGNSHLGVPTFDRSESDKRHEEILKAGLPAQDLADL 670

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L  QMH AA+ L FE AAR+RDEI+ LK   
Sbjct: 671 IRQLSDQMHTAAEQLQFELAARLRDEIRDLKKEL 704


>gi|228473000|ref|ZP_04057757.1| excinuclease ABC subunit B [Capnocytophaga gingivalis ATCC 33624]
 gi|228275582|gb|EEK14359.1| excinuclease ABC subunit B [Capnocytophaga gingivalis ATCC 33624]
          Length = 667

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/661 (49%), Positives = 453/661 (68%), Gaps = 5/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +D+ P GDQPAAIA L+ GI+ +EK Q LLGVTGSGKTFT+A V+E +Q P +V+A
Sbjct: 3   FQLVSDFKPMGDQPAAIASLVNGINDQEKYQTLLGVTGSGKTFTIANVVEQVQVPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK FFP+NAVEYFVSYYDYYQPEAY+P T  YIEK+ SINE I+RMR 
Sbjct: 63  HNKTLAAQLYNEFKAFFPNNAVEYFVSYYDYYQPEAYIPVTGVYIEKDLSINEDIERMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T +LL  R D +VV+SVSC+YGIG+   + + ++ ++ G ++ + + +  LV+  Y R
Sbjct: 123 STTSALLSGRRDVLVVASVSCLYGIGNPLEFQKNVISIEEGQTLTRTKFMHQLVQSLYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                + G FRV GD I++FP + E    RV  FGN+IE I  F   T + I  ++ + I
Sbjct: 183 TTADFLHGNFRVKGDVIDVFPGYSE-TPIRVHFFGNEIELIESFDRETNKTIERLDKLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A++ I+++L  ++   +  G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLQAAIRDIQDDLVKQIEFFQSVGKTLEAKRLEERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL  R PG  P  L +Y P+D L+ +DESH T+PQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDRRPPGSRPFCLIDYFPKDFLMVIDESHATVPQVRAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL++C G+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELQKCGGVYVEQVIRPTGLLDPKI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R ++ Q++D+ +EI    ++  R+L+T LTKRMAE+LT+YL +  +R RY+HS+V TL
Sbjct: 422 EVRPSKNQIDDLLEEIQKCVEEDQRVLVTTLTKRMAEELTKYLTKMEVRCRYVHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  S+ QT+GRAA
Sbjct: 482 ERIEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSARSMTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++ + I+YAD IT S+++ I+ET  RREKQ+ +N  H I PQ + +KI   +    + 
Sbjct: 542 RNIDGRAIMYADKITDSMRVTIEETAYRREKQMNYNLTHGITPQPLHKKIENALSKSPIT 601

Query: 740 D---AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +     T      +    +S+ + +  ++  RK M  A+  L+F +AA  RD +K L+  
Sbjct: 602 EFHYENTPKKKEHSPTKPMSRGELEKEIQQTRKLMEAASKELDFIQAAHYRDLLKELQEK 661

Query: 797 P 797
            
Sbjct: 662 L 662


>gi|281422445|ref|ZP_06253444.1| excinuclease ABC subunit B [Prevotella copri DSM 18205]
 gi|281403508|gb|EFB34188.1| excinuclease ABC subunit B [Prevotella copri DSM 18205]
          Length = 681

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/680 (47%), Positives = 455/680 (66%), Gaps = 20/680 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL +G+   +  Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FKITSKYKPTGDQPQAIRQLTEGVLEGDPAQVLLGVTGSGKTFTVANVIANVGKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYQEMKGFFPENAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            A  +LL  R D IVVSSVSCIYG+G   +  + I+++  G  +++ E L  LV   Y R
Sbjct: 123 GAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQENIIKIHRGQRLDRNEFLRKLVDALYIR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV G++++IF ++  D   RV+ + ++I+ I E   LT  ++ + E  +I
Sbjct: 183 NDIELQRGNFRVKGETVDIFMAYS-DHVLRVTWWDDEIDSIEEVDSLTYHRLASFEDYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +    +A++ I+++L  ++   +  G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTTKEQQESAIRRIQDDLVKQVEFFKSIGDGIKAQRIKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR+ GE P  L ++ P+D LL VDESHV+IPQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRHEGERPYCLLDFFPKDFLLVVDESHVSIPQIGAMYGGDRARKKNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPL+FEE++ L P  I VSATP  +EL + +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLKFEEFHDLIPQAIYVSATPADYELREAEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ DEI     +  R+L+T LTKRMAE+LTE+L   N++  Y+HS+V TL
Sbjct: 422 EVRPSENQIDDLLDEILTRTHRNERVLITTLTKRMAEELTEFLLNHNVKAAYIHSDVATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIMNDLRAGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RNVN KVI+YAD IT S+Q  IDET RRR  QL++N  H I P+ + + I   +      
Sbjct: 542 RNVNGKVIMYADNITDSMQKTIDETARRRSIQLKYNADHGITPKQIVKAITSALPTSKEE 601

Query: 734 ------------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
                        P +  +  +     D    S+SK++ +  + +    M  AA +L+F 
Sbjct: 602 GAKIVPMGAEGSKPRVYVEPESAAFVADPIVRSMSKEELEKSIANTTALMKQAAKDLDFM 661

Query: 782 EAARIRDEIKRLKSSPYFQG 801
           +AA+ RDEI RL+     +G
Sbjct: 662 QAAQYRDEIIRLQKELEEKG 681


>gi|171743203|ref|ZP_02919010.1| hypothetical protein BIFDEN_02331 [Bifidobacterium dentium ATCC
           27678]
 gi|171278817|gb|EDT46478.1| hypothetical protein BIFDEN_02331 [Bifidobacterium dentium ATCC
           27678]
          Length = 712

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/694 (50%), Positives = 465/694 (67%), Gaps = 31/694 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
              +    F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +
Sbjct: 13  EIERVDKPFVVKSPYRPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERL 72

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN
Sbjct: 73  QRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNIN 132

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ++R+RH+AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK G  +++ ELL   
Sbjct: 133 DDVERLRHAATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKEGQQIDRDELLRMF 192

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I 
Sbjct: 193 VSMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDHISTLHPLTGDVID 251

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           +   + I+  SHYV     +  A+  IKEEL  R+ EL K+G+ LEAQRL  R TYDLEM
Sbjct: 252 HEPQVHIFPASHYVAGPERMERALATIKEELDQRVAELRKQGKELEAQRLTMRTTYDLEM 311

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G C  +ENYSR+  GR PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  
Sbjct: 312 LTQVGVCSGVENYSRHFDGREPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDAS 371

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPT
Sbjct: 372 RKRTLVEHGFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYELGLSDG-VVEQIIRPT 430

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +++R    Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+
Sbjct: 431 GLVDPKIDVRPVEGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYL 490

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 491 HSDVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLI 550

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+  VI+YAD +T+++  AIDET RRR+ Q+ +NK+H I+P+ + +KI +V
Sbjct: 551 QTIGRAARNVSGTVIMYADDVTEAMHKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDV 610

Query: 733 IDPILLEDAATTNI-----------------------------SIDAQQLSLSKKKGKAH 763
            D +  ED  T  +                               +  +  L  +     
Sbjct: 611 NDMLAKEDVDTQTLLGTGYRNADKAGNSHLGVPTFDRSESDKRHEEILKAGLPAQDLADL 670

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L  QMH AA+ L FE AAR+RDEI+ LK   
Sbjct: 671 IRQLSDQMHTAAEQLQFELAARLRDEIRDLKKEL 704


>gi|226355146|ref|YP_002784886.1| excinuclease ABC subunit B [Deinococcus deserti VCD115]
 gi|226317136|gb|ACO45132.1| putative UvrABC system protein B (Excinuclease ABC, subunit B)
           [Deinococcus deserti VCD115]
          Length = 671

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/659 (51%), Positives = 461/659 (69%), Gaps = 8/659 (1%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++++ + PSGDQP AI  L+ G+ S  + Q LLG TG+GKT+TMAKVIE   RPA++MAP
Sbjct: 3   KVKSAFTPSGDQPTAIRSLVDGLDSGLRFQTLLGATGTGKTYTMAKVIEETGRPALIMAP 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NKIL AQL SEF+ FFP  AVE+F+SYYDYYQPEAYVP  D +IEK++++N++I+R+RHS
Sbjct: 63  NKILTAQLASEFREFFPDAAVEFFISYYDYYQPEAYVPGKDLFIEKDAAVNQEIERLRHS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
            TRSLL R D IVV+SVSCIYG+G  + Y+ + + LK GD+V + E+L  LV  QY+R D
Sbjct: 123 TTRSLLTRRDTIVVASVSCIYGLGDPKEYTALNLILKKGDAVSRDEILGRLVNMQYERND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           I ++ G FR  G+ IE++P++ ++   R+ ++G+D+E IS  +PLTG ++ +++   +Y 
Sbjct: 183 IEMMPGRFRAKGEMIEVWPAY-DEQPLRIELWGDDVERISVVHPLTGDRLADLDATVVYP 241

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
             HYV+    +  A+  I++EL  RL   +  G+LLEAQRL++R  YDLEML+  G C  
Sbjct: 242 AKHYVSSAGNIERAIGTIQQELDERLDYFKSVGKLLEAQRLKERTLYDLEMLKVLGYCSG 301

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSR++ GR PG  P T+ +Y P+D + F+DESHVT+PQI GM  GD  RK TL +YG
Sbjct: 302 IENYSRHIDGRAPGATPYTMLDYFPDDFVTFIDESHVTVPQIGGMANGDRARKQTLVDYG 361

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPS MDNRPL F+E+      T+ VSATPG +E E     + +QIIRPTGLVDPPV +
Sbjct: 362 FRLPSAMDNRPLNFQEFMDKTGQTVFVSATPGPFEREVSDA-VSDQIIRPTGLVDPPVTV 420

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R    QVED+   I      G R L+T LTKRM+EDLTEYL E+ ++ RYMHS++ ++ER
Sbjct: 421 RPINGQVEDLLGRIRERTAIGERTLVTTLTKRMSEDLTEYLLEKGVKARYMHSDIDSVER 480

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             IIRDLRLG +DVLVGINLLREGLD+PE  LVAILDADK GFLRS+ +L+QTIGRAARN
Sbjct: 481 QVIIRDLRLGHYDVLVGINLLREGLDLPEVSLVAILDADKPGFLRSERALVQTIGRAARN 540

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           VN +VILY DTIT ++Q A++ET RRREKQ  +N+ H I P +V + + +VI      + 
Sbjct: 541 VNGEVILYGDTITPAMQFAMEETARRREKQTSYNEAHGITPTTVIKGVRDVIRGEEQPEE 600

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
            ++        L   +    A L  L   M  A+++L+FE AA +RD+I+ +++    +
Sbjct: 601 ISSAT------LGNDRDSLTAQLTDLELDMWQASEDLDFERAASLRDQIRAIEAKLQGK 653


>gi|302380398|ref|ZP_07268867.1| excinuclease ABC, B subunit [Finegoldia magna ACS-171-V-Col3]
 gi|302311802|gb|EFK93814.1| excinuclease ABC, B subunit [Finegoldia magna ACS-171-V-Col3]
          Length = 617

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/616 (53%), Positives = 443/616 (71%), Gaps = 1/616 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI +L  G+ + +  Q+L GVTGSGKTFTMA +I+ +QRP +V+A
Sbjct: 3   FKLHSKFKPTGDQPQAIDKLANGLENGKNHQILKGVTGSGKTFTMANIIQKVQRPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL SEF+ FFP NAVE+FVSYYDYYQPEAYV ++DTYIEK+SSINE++D++RH
Sbjct: 63  HNKTLAYQLASEFREFFPENAVEFFVSYYDYYQPEAYVVQSDTYIEKDSSINEELDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+VSSVSCIYG+G    Y  +++ L+ G   ++ E++  L+  QY R 
Sbjct: 123 SATMSLFERRDVIIVSSVSCIYGLGDPIDYENLVISLRPGMEKDRTEVMKKLIDIQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RGTFRV GDS++IFP+   + + R+  FG++I+ I+E   LTG+ +     + IY
Sbjct: 183 DINFTRGTFRVRGDSLDIFPASSGEKSVRIEFFGDEIDRITEIDALTGEIVGERNHVAIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T +  +  A+  I+EEL+ RL   +   +LLEAQRLEQR  YD+EML+  G C 
Sbjct: 243 PASHYATTQKKVEKAIVTIEEELEDRLKYFKDHNKLLEAQRLEQRTRYDIEMLKEMGFCT 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+++ R PG  P TL +Y P+D +  +DESHVT+PQI GMY GD  RK +L +Y
Sbjct: 303 GIENYSRHMSQRKPGSRPYTLIDYFPKDFVTMIDESHVTVPQIGGMYEGDRSRKTSLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+  +    I VSATPG +E  +    +VEQ+IRPTGL+DP +E
Sbjct: 363 GFRLPSALDNRPLKFSEFESMMNQVIYVSATPGKYEKAKTNE-VVEQVIRPTGLLDPKIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EIN   ++G R+L+T LTK+M+EDLT YL + +I+V Y+HS++ T+E
Sbjct: 422 VRPTKGQIDDLVSEINKTIEKGERVLITTLTKKMSEDLTRYLEDLDIKVTYLHSDIDTIE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLR GK+DVLVGINLLREGLD+PE  L+AILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 482 RMEIIRDLREGKYDVLVGINLLREGLDLPEVSLIAILDADKEGFLRSETSLIQTIGRAAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N  VI+Y DTIT+S+ +AI ET RRRE Q E+NK+HNI P ++ + + + I    + +
Sbjct: 542 NSNGHVIMYGDTITRSMDVAITETNRRREIQEEYNKEHNITPTTINKSVRKRIQNTFVAE 601

Query: 741 AATTNISIDAQQLSLS 756
                 +    + S +
Sbjct: 602 ENENYDANKVTEFSKA 617


>gi|310287296|ref|YP_003938554.1| Excinuclease ABC subunit B [Bifidobacterium bifidum S17]
 gi|309251232|gb|ADO52980.1| Excinuclease ABC subunit B [Bifidobacterium bifidum S17]
          Length = 703

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/694 (50%), Positives = 470/694 (67%), Gaps = 31/694 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N  +    F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +
Sbjct: 4   NIERADKPFVVKSPYKPSGDQPQAIEELATRIENGENDVVLMGATGTGKTATTAWLIERL 63

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN
Sbjct: 64  QRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNIN 123

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ++R+RH AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ L+ G  +++ +LL   
Sbjct: 124 DDVERLRHQATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLQEGQQIDRDQLLRKF 183

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I 
Sbjct: 184 VGMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVID 242

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           +  ++ I+  SHYV     +  A+K IKEEL  R+ EL+K+G+ LEAQRL  R TYDLEM
Sbjct: 243 HETSVHIFPASHYVAGPERMEHALKTIKEELDQRVAELKKQGKELEAQRLTMRTTYDLEM 302

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G C  +ENYSR+   R PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  
Sbjct: 303 LTQVGVCSGVENYSRHFDNRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDAS 362

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPT
Sbjct: 363 RKRTLVEHGFRLPSAMDNRPLKWPEFLDRVGQTVYLSATPGDYELGLSDG-VVEQIIRPT 421

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +++R  + Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+
Sbjct: 422 GLVDPKIDVRPTKGQIDDLLAEIKDRVDKNERTLVTTLTKKMAEDLTDYLLERGIKVEYL 481

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 482 HSDVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLI 541

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+  VI+YAD  T +++ AIDET RRR +Q+ +NK+H I+P+ + +KI +V
Sbjct: 542 QTIGRAARNVSGTVIMYADETTDAMRKAIDETDRRRVRQIAYNKEHGIDPKPLIKKISDV 601

Query: 733 IDPILLEDAATTNI----------------------SIDAQ-------QLSLSKKKGKAH 763
            D +  ED  T  +                      + +A        +  L  +     
Sbjct: 602 NDMLAKEDVDTATLLEGGYRNAGKAGNTHLGVPSLDAAEADKRHEEILKAGLPAQDLADL 661

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L +QMH AA+ L FE AAR+RDEI+ LK   
Sbjct: 662 IRQLSEQMHTAAEQLQFELAARLRDEIRDLKKEL 695


>gi|167762886|ref|ZP_02435013.1| hypothetical protein BACSTE_01250 [Bacteroides stercoris ATCC
           43183]
 gi|167699226|gb|EDS15805.1| hypothetical protein BACSTE_01250 [Bacteroides stercoris ATCC
           43183]
          Length = 716

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/688 (47%), Positives = 469/688 (68%), Gaps = 23/688 (3%)

Query: 130 SINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI 189
           S+ ++  ++  F++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI
Sbjct: 23  SLPDNPDEMNKFELTSAYRPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVI 82

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
             + +P ++++ NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ 
Sbjct: 83  ANINKPTLILSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDL 142

Query: 250 SINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           +IN++ID++R +AT +LL  R D +VVSSVSCIYG+G+   +   +++++ G +  +   
Sbjct: 143 AINDEIDKLRLAATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQGKTYSRNVF 202

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV   Y R DI + RG FRV GD+++I+ ++ +++  R+  +G++++ I E  P++G
Sbjct: 203 LRRLVDSLYVRNDIDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEVDSIEEVDPVSG 261

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
             I   +  KIY  + ++T +     A+  I+++L  ++   E EGR  EA+RL++R+TY
Sbjct: 262 VTIARFDAYKIYPANLFMTTKEATLRAIHEIEDDLHKQVQWFESEGRPFEAKRLQERVTY 321

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EML   G C  IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY 
Sbjct: 322 DMEMLRELGHCSGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYG 381

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L EYGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+
Sbjct: 382 GDRARKTNLVEYGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELMQSEGIVVEQV 441

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGL+DP +E+R +  Q++D+ +EI L  ++  R L+T LTKRMAE+LTEYL   +++
Sbjct: 442 IRPTGLLDPIIEVRPSHNQIDDLMEEIQLRIERNERTLVTTLTKRMAEELTEYLLNNSVK 501

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
             Y+HS+V TLER++I+ DLR G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 502 CNYIHSDVDTLERVKIMSDLREGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSH 561

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE- 727
            SL QT GRAARNVN  VI+YAD IT+S+QL IDET RRREKQL++N++H I PQ +++ 
Sbjct: 562 RSLTQTAGRAARNVNGMVIMYADKITESMQLTIDETNRRREKQLKYNEEHGITPQQIRKA 621

Query: 728 --------------------KIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSL 767
                               K         +E  ++T ++ D     +S+ + +  ++  
Sbjct: 622 KNLNVFAGTEGFAEGGTGKEKSPATAPRPYVEQESSTTVAADPIVRYMSRAQLEKSIERT 681

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKS 795
           RK M  AA  L+F EAA+ RDE+ +++ 
Sbjct: 682 RKLMQEAAKKLDFIEAAQYRDEVLKMEE 709


>gi|182415429|ref|YP_001820495.1| excinuclease ABC, B subunit [Opitutus terrae PB90-1]
 gi|177842643|gb|ACB76895.1| excinuclease ABC, B subunit [Opitutus terrae PB90-1]
          Length = 677

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/664 (51%), Positives = 458/664 (68%), Gaps = 14/664 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++  DY P+GDQP AI QL+  IH+  + Q LLGVTGSGKTFTMA VI   +RP +++
Sbjct: 2   LFKLHADYQPTGDQPQAIEQLVASIHAGNRHQTLLGVTGSGKTFTMANVIARCERPTLII 61

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAY+  +DTYIEK+SSINE+I+R+R
Sbjct: 62  SHNKTLAAQLYSEFKNFFPENAVEYFVSYYDYYQPEAYIASSDTYIEKDSSINEEIERLR 121

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +AT SL+ R D +VV+SVSCIYG+GS E ++++ + L+ G+ + +   L  LV   Y R
Sbjct: 122 IAATSSLVSRRDVVVVASVSCIYGLGSPEEFTELRIPLRRGEQLGRHRFLERLVDNIYDR 181

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D  + RGTFRV GD +++ P++LE    RV  FG+++E I+EF P++G+ +RN+E   +
Sbjct: 182 NDYELKRGTFRVRGDVVDVMPAYLE-HGLRVEFFGDEVEAITEFDPVSGKVLRNLEQFDL 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + YVT R  L+ A++ IK EL  R+   E++G+ LEAQR+  R  YDLEML+  G C
Sbjct: 241 YPANQYVTSRGRLDPAIRSIKAELDERVAYFEQKGQYLEAQRVRMRTNYDLEMLQEMGFC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LTGR  GE P  L ++ P+D LL +DESH T+PQI GM+ GD  RK TL +
Sbjct: 301 NGIENYSRHLTGRKAGERPFCLIDFFPKDFLLMIDESHATVPQIGGMFNGDRARKQTLVD 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRP  FEE+  +    + VSATP  +EL++   ++ EQ++RPTGL+DP +
Sbjct: 361 FGFRLPSALDNRPQTFEEFEQITHQALYVSATPAEFELKRS-TVVAEQLVRPTGLLDPEI 419

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            IR  + QVE++  EI  AA  G R+L+T LTKR++EDLT YL E  IRV Y+HS++  +
Sbjct: 420 VIRPTKGQVENLIGEIKAAAAAGERVLVTTLTKRLSEDLTSYLREAKIRVEYLHSDIDAI 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R+LRLG FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+TSL+QT GRAA
Sbjct: 480 ERVEILRNLRLGNFDVLIGINLLREGLDLPEVALVAILDADKEGFLRSETSLVQTAGRAA 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736
           R+   +VI YAD IT+SI+  ++    RREKQL +N +H I P+SVK      +   D  
Sbjct: 540 RHEKGRVIFYADNITESIRRTVEIVKYRREKQLAYNVEHGITPRSVKRAAQASLHVYDGS 599

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              D A     +D            A +  L  +M  AA  L FE AA +RD+I  LKS 
Sbjct: 600 GERDEAAVAEEVD---------DVAAVIAELEDEMQEAAGRLEFERAAVLRDQINALKSG 650

Query: 797 PYFQ 800
            Y +
Sbjct: 651 EYRK 654


>gi|255536616|ref|YP_003096987.1| excinuclease ABC subunit B [Flavobacteriaceae bacterium 3519-10]
 gi|255342812|gb|ACU08925.1| Excinuclease ABC subunit B [Flavobacteriaceae bacterium 3519-10]
          Length = 663

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/665 (50%), Positives = 462/665 (69%), Gaps = 13/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+Q++Y P+GDQP AI +L KG+   EK Q LLGVTGSGKTFT+A V+  +Q+P +V+A
Sbjct: 3   FQLQSEYKPTGDQPVAIDKLTKGLEIGEKYQTLLGVTGSGKTFTVANVVNNVQKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEA++  T+TYIEK+ SINE+++++R 
Sbjct: 63  HNKTLAAQLFMEFKEFFPDNAVEYFVSYYDYYQPEAFIASTNTYIEKDLSINEEVEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA+ SLL  R D ++V+SVSCIYGIG+   +++ +++LK    + + + L  LV   Y R
Sbjct: 123 SASASLLSGRRDVLIVASVSCIYGIGNPSEFNKSLIELKKSSKITRTDFLHKLVNALYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD I+++P++ ++ A RV  FG++IE+I  F PLTG  + + + + I
Sbjct: 183 TLNEFTRGTFRVKGDVIDVYPAYADN-AVRVQFFGDEIEKIYSFNPLTGNIMSDFDEMNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT + T   A++ I++++  ++       +  EA+RL++R   DLEM++  G C
Sbjct: 242 YPANLFVTSKETQVGAIREIQDDMVKQVDFFNSIEKPFEAKRLQERTELDLEMMKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY   R PG  P  L +Y P+D L+ +DESHVT+PQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDRRLPGTRPFCLLDYFPKDFLMVIDESHVTVPQVHAMYGGDRSRKEVLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLP+ MDNRPL+FEE+  ++   I VSATP  +ELE+  G  VEQIIRPTGL+DP +
Sbjct: 362 HGFRLPAAMDNRPLKFEEFEAMQNQVIYVSATPADYELEKSGGEYVEQIIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           +IR +  Q++D+ +EI    +   R+L+T LTK+MAE+LT+Y     IR RY+HS+V+TL
Sbjct: 422 DIRPSINQIDDLIEEIRKRTEVDERVLVTTLTKKMAEELTKYFTRFGIRTRYIHSDVETL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERI+I++DLR+G FDVLVG+NLLREGLD+PE  LVAILDADKEG LRS+ SL+QTIGRAA
Sbjct: 482 ERIQIMQDLRVGLFDVLVGVNLLREGLDLPEVSLVAILDADKEGMLRSRRSLVQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RNVN + ILYAD IT S+Q AIDET  RR+KQ+E+N+KH + P S+ +KI E++      
Sbjct: 542 RNVNGRAILYADKITVSMQRAIDETNYRRQKQMEYNEKHGLVPTSLNKKISEILVGRSKD 601

Query: 734 --DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
             DP   +      ++ D        K  +  +   +K M  AA NL+F +AA++RDEI 
Sbjct: 602 FPDPKYTQKEILKQVAEDKANY---GKDAQVLIAEKQKAMEAAARNLDFIKAAKLRDEIA 658

Query: 792 RLKSS 796
            LK++
Sbjct: 659 ALKAT 663


>gi|260592314|ref|ZP_05857772.1| excinuclease ABC subunit B [Prevotella veroralis F0319]
 gi|260535764|gb|EEX18381.1| excinuclease ABC subunit B [Prevotella veroralis F0319]
          Length = 680

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/676 (47%), Positives = 465/676 (68%), Gaps = 20/676 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L +G+   +K Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FKLTSKYKPTGDQPEAIKELTEGLERGDKSQVLLGVTGSGKTFTVANVIANVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TD YIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKAFFPENAVEYYVSYYDYYQPEAYLPTTDVYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  SLL  R D IVVSSVSCIYG+G+  +  + ++Q+K G  +++ E L  LV   Y R
Sbjct: 123 SAVSSLLSGRKDVIVVSSVSCIYGMGAPVAMKENVIQIKKGQIIDRNEFLRRLVDSLYTR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++ +++  R++ + ++I+ I E  P+   +I   +  ++
Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYNDNI-LRITWWDDEIDTIEEVDPIAFHRIATFDDYEL 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I++++  ++    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTEGAIRQIQDDMVKQVDFFTQLGDNIKAQRIKERVEYDIEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G+ P  L ++ P+D L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRKAGQRPYCLLDFFPKDYLMVIDESHVSVPQISAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPL+FEE++ L    I VSATP  +EL++ +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLKFEEFHNLIHQIIYVSATPADYELKESEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI + A++  R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V +L
Sbjct: 422 EVRPSENQIDDLMNEIVIRAEKEERVLVTTLTKRMAEELTEYLLNHDIRTAYIHSDVASL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++II DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 DRVKIINDLRAGLYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RNVN KVI+YAD IT+S+Q  IDET RRR KQL++N++H+I P+ + + I + +      
Sbjct: 542 RNVNGKVIMYADNITESMQRTIDETMRRRVKQLKYNEEHHITPKQIVKAIKDTLPKTGRS 601

Query: 734 ------------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
                         I  E   +   + D   + ++K++ +  + +    M  AA +L+F 
Sbjct: 602 TTAQAFPFAKGAKGIYTEPTQSMAFAADPIVMRMTKEQLEKSIANTTALMKQAAKDLDFL 661

Query: 782 EAARIRDEIKRLKSSP 797
           +AA+ RDEI RL+   
Sbjct: 662 QAAQYRDEIIRLQKQL 677


>gi|296453877|ref|YP_003661020.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183308|gb|ADH00190.1| excinuclease ABC, B subunit [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 703

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/694 (50%), Positives = 467/694 (67%), Gaps = 31/694 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N  +    F +++ Y PSGDQP AIA+L + I + E   +L+G TG+GKT T A +IE +
Sbjct: 4   NIERADKPFVVKSPYKPSGDQPQAIAELAERIENGENDVVLMGATGTGKTATTAWLIERL 63

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN
Sbjct: 64  QRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNIN 123

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ++R+RH AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK G  + + +LL   
Sbjct: 124 DDVERLRHQATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKEGQQINRDDLLRRF 183

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I 
Sbjct: 184 VAMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIA 242

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           +   + I+  SHYV     +  A+K I+EEL  RL EL K+G+ LEAQRL  R TYDLEM
Sbjct: 243 HEPQVHIFPASHYVAGPERMERALKTIREELDERLAELRKQGKELEAQRLNMRTTYDLEM 302

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G C  +ENYSR+  GR  G PP TL ++ P+D LL +DESHVT+PQI  MY GD  
Sbjct: 303 LTQVGVCSGVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDAS 362

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS MDNRPL++ E+      T+ +SATPG +E+    G +VEQIIRPT
Sbjct: 363 RKRTLVEHGFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYEMGLSDG-VVEQIIRPT 421

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP +++R  + Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+
Sbjct: 422 GLLDPKIDVRPVKGQIDDLLAEIKARVAKNERALVTTLTKKMAEDLTDYLLERGIKVEYL 481

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++R LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 482 HSDVDTLRRVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLI 541

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+  VI+YAD  T++++ AIDET RRR KQ+ +N++H I+P+ + +KI +V
Sbjct: 542 QTIGRAARNVSGTVIMYADETTEAMRQAIDETDRRRAKQIAYNQEHGIDPKPLIKKISDV 601

Query: 733 IDPILLEDAATTNI-----------------------------SIDAQQLSLSKKKGKAH 763
            D +  ED  T  +                               +  +  L  +     
Sbjct: 602 NDMLAKEDVDTQTLLEGGYRNAGKAGNTHLGVPVLDPNEADKRHEEILKAGLPAQDLADL 661

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L +QMH AA+ L FE AAR+RDEI+ LK   
Sbjct: 662 IRQLSEQMHTAAEQLQFELAARLRDEIRDLKKEL 695


>gi|119025694|ref|YP_909539.1| excinuclease ABC subunit B [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765278|dbj|BAF39457.1| UvrABC system protein B [Bifidobacterium adolescentis ATCC 15703]
          Length = 696

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/688 (50%), Positives = 467/688 (67%), Gaps = 31/688 (4%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +QRP ++
Sbjct: 3   KPFVVKSPYKPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERLQRPTLI 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           + PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN+ ++R+
Sbjct: 63  IEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNINDDVERL 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ L+ G  +++ +LL   V  QYK
Sbjct: 123 RHAATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLQEGQQIDRDDLLRKFVDMQYK 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I +   + 
Sbjct: 183 RNDIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIAHESQVH 241

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SHYV     +  A+K I++EL  R  EL K+G+ LEAQRL  R TYDLEML   G+
Sbjct: 242 IFPASHYVAGAERMERALKTIQQELDERTAELHKQGKELEAQRLTMRTTYDLEMLSQVGT 301

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  +ENYSR+  GR PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  RK TL 
Sbjct: 302 CSGVENYSRHFDGRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLV 361

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPTGLVDP 
Sbjct: 362 EHGFRLPSAMDNRPLKWPEFQERVGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLVDPQ 420

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +++R    Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+HS+V T
Sbjct: 421 IDVRPVEGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDT 480

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 481 LRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRA 540

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV+  V++YAD IT++++ AIDET RRR+ Q+ +NK+H I+P+ + +KI +V D +  
Sbjct: 541 ARNVSGTVVMYADDITEAMRKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDVNDMLAK 600

Query: 739 EDAATTNI-----------------------------SIDAQQLSLSKKKGKAHLKSLRK 769
           ED  T  +                               +  +  L  +     ++ L +
Sbjct: 601 EDVDTQTLLGTGYRNADKAGNSHLGVPHTSKEESGRRHEEILKAGLPAQDLADLIRQLSE 660

Query: 770 QMHLAADNLNFEEAARIRDEIKRLKSSP 797
           QMH AA+ L FE AAR+RDEI+ LK   
Sbjct: 661 QMHTAAEQLQFELAARLRDEIRDLKKEL 688


>gi|298253842|ref|ZP_06977429.1| helicase subunit of the DNA excision repair complex [Gardnerella
           vaginalis 5-1]
 gi|297531985|gb|EFH70960.1| helicase subunit of the DNA excision repair complex [Gardnerella
           vaginalis 5-1]
          Length = 704

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/704 (49%), Positives = 477/704 (67%), Gaps = 34/704 (4%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
           N   +    F ++  Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE 
Sbjct: 3   NKIQRTNKPFVVKAPYKPSGDQPQAIDELANRIENGENDVVLMGATGTGKTATTAWLIER 62

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+I
Sbjct: 63  LQRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNI 122

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           N+ ++R+RH+AT +LL R DC+VV++VSCIYG+G+ E Y++ ++ L +G+ +E+ +LL  
Sbjct: 123 NDDVERLRHAATANLLTRRDCVVVATVSCIYGLGTPEEYAERMLMLSVGEQLERDDLLRQ 182

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
            V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ I+  +PLTG+ I
Sbjct: 183 FVSMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRITMLHPLTGEVI 241

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
           R   ++ I+  SHY+     +  A+K I++E   R+ +L+K+ +LLEAQRLE R TYDLE
Sbjct: 242 RQESSVHIFPASHYIAGPERMECAVKAIEKERDERVAQLKKQNKLLEAQRLEMRTTYDLE 301

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           ML   G C  +ENYSR+  GR  G PP TL ++ P+D LL +DESHVT+PQI  MY GD 
Sbjct: 302 MLRQVGVCPGVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVLDESHVTVPQIGAMYEGDA 361

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK TL E+GFRLPS MDNRPL+++E+      T+ +SATPG +EL    G +VEQIIRP
Sbjct: 362 SRKRTLVEHGFRLPSAMDNRPLKWKEFLEHVGQTVYLSATPGDYELGLSDG-VVEQIIRP 420

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP +E+R    QV+D+  EI     +  R+L+T LTK+MAEDLT+Y  E  I+V Y
Sbjct: 421 TGLLDPKIEVRPVEGQVDDLLAEIKARVAKDERVLVTTLTKKMAEDLTDYFLELGIKVEY 480

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS+V TL R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SL
Sbjct: 481 LHSDVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSL 540

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARNV+  V++YADT+T ++  AI ET RRREKQ+ +NK H I+P+ +++KI +
Sbjct: 541 IQTIGRAARNVSGTVLMYADTVTDAMSKAISETERRREKQIAYNKAHGIDPKPLRKKISD 600

Query: 732 VIDPILLEDAATTNISID------------------------------AQQLSLSKKKGK 761
           V D +  ED  T  +                                 A    L +    
Sbjct: 601 VNDMLAKEDVDTQTLLAGGYRNANKAGNSHYGVPKEPNLGQQSKEKRMANISELPQDDIM 660

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           + +K+L +QMH+AA+ L FE AAR+RDEI+ LK     + + D+
Sbjct: 661 SLIKNLSEQMHVAAEQLQFELAARLRDEIRDLKKE--LRQISDA 702


>gi|294674053|ref|YP_003574669.1| excinuclease ABC subunit B [Prevotella ruminicola 23]
 gi|294472062|gb|ADE81451.1| excinuclease ABC, B subunit [Prevotella ruminicola 23]
          Length = 679

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/680 (47%), Positives = 466/680 (68%), Gaps = 18/680 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F + ++Y P+GDQP AI QL +G+   ++ Q+LLGVTGSGKTFTMA VI    RP +
Sbjct: 1   MSKFILTSEYKPTGDQPEAIRQLTEGLDRGDRAQVLLGVTGSGKTFTMANVIAQHNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLY E K FFP NAVE++VSYYDYYQPEAY+P TDTYIEK+ +IN++IDR
Sbjct: 61  ILSHNKTLAAQLYEEMKGFFPQNAVEFYVSYYDYYQPEAYLPTTDTYIEKDLAINDEIDR 120

Query: 258 MRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +R SA  +LL  RND +VVSSVSCIYG+GS  +  + +++LK G  +++  LL  LV   
Sbjct: 121 LRLSAVSNLLSGRNDVVVVSSVSCIYGMGSPVALQENVIELKKGQILDRNALLRKLVAAL 180

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D+ + RG FRV GD+++I  ++ E V  R++ + ++I+ I E   +T  ++ + + 
Sbjct: 181 YVRNDLDLQRGNFRVKGDTVDIAMAYSE-VVLRITFWDDEIDAIEEMDAVTFDRLASFDE 239

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
            ++Y  + ++T +   N A+  I+++L  +++  E+ G  ++AQR+++R+ YD+EM++  
Sbjct: 240 YRLYPANLFMTSQEQTNIAIHQIQDDLMKQVLYFEEIGDNIKAQRIKERVEYDMEMIKEL 299

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRY  GR  GE P  L ++ P+D LL +DESHV++PQIS MY GD  RK  
Sbjct: 300 GHCSGIENYSRYFDGRQAGERPYCLLDFFPDDYLLIIDESHVSVPQISAMYGGDRSRKQN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLP+  DNRPL+FEE+       I VSATP  +EL + +G++VEQ+IRPTGL+D
Sbjct: 360 LVEYGFRLPAAFDNRPLKFEEFQQEVNQVIYVSATPADYELNEAEGVVVEQVIRPTGLLD 419

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R +  Q++D+ DEI   + +G R+L+T LTKRMAE+LTEYL   +++  Y+HS+V
Sbjct: 420 PEIEVRPSENQIDDLMDEILTRSHRGERVLITTLTKRMAEELTEYLLNHSVKTAYIHSDV 479

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TL+R++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT G
Sbjct: 480 ATLDRVKILSDLRQGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 539

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK---------- 726
           RAARNVN KVI+YADTIT S+QL IDET RRR KQ+++N++H+I P+ +           
Sbjct: 540 RAARNVNGKVIMYADTITASMQLTIDETLRRRLKQMKYNEEHHITPKQIVKNLSFNALQK 599

Query: 727 ------EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
                 +++M           A   ++ D  +  +++ + +  ++   ++M  AA  L+F
Sbjct: 600 ENRADTKELMRNFSMAAENGDAGVRVAADPIEERMTRPQMEKLIEETTRKMKEAAKQLDF 659

Query: 781 EEAARIRDEIKRLKSSPYFQ 800
            +AA+ RDEI RL+     +
Sbjct: 660 LQAAQYRDEIVRLQKELELK 679


>gi|154487489|ref|ZP_02028896.1| hypothetical protein BIFADO_01344 [Bifidobacterium adolescentis
           L2-32]
 gi|154084007|gb|EDN83052.1| hypothetical protein BIFADO_01344 [Bifidobacterium adolescentis
           L2-32]
          Length = 703

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/694 (50%), Positives = 469/694 (67%), Gaps = 31/694 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N  +    F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +
Sbjct: 4   NIERVNKPFVVKSPYKPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERL 63

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN
Sbjct: 64  QRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNIN 123

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ++R+RH+AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ L+ G  +++ +LL   
Sbjct: 124 DDVERLRHAATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLQEGQQIDRDDLLRKF 183

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I 
Sbjct: 184 VDMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIA 242

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           +   + I+  SHYV     +  A+K I++EL  R  EL K+G+ LEAQRL  R TYDLEM
Sbjct: 243 HESQVHIFPASHYVAGPERMERALKTIQQELDERTAELHKQGKELEAQRLTMRTTYDLEM 302

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G+C  +ENYSR+  GR PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  
Sbjct: 303 LSQVGTCSGVENYSRHFDGRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDAS 362

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           R+ TL E+GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPT
Sbjct: 363 RERTLVEHGFRLPSAMDNRPLKWPEFQERVGQTVYLSATPGDYELGLSDG-VVEQIIRPT 421

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +++R    Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+
Sbjct: 422 GLVDPQIDVRPVEGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYL 481

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 482 HSDVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLI 541

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+  V++YAD IT++++ AIDET RRR+ Q+ +NK+H I+P+ + +KI +V
Sbjct: 542 QTIGRAARNVSGTVVMYADDITEAMRKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDV 601

Query: 733 IDPILLEDAATTNI-----------------------------SIDAQQLSLSKKKGKAH 763
            D +  ED  T  +                               +  +  L  +     
Sbjct: 602 NDMLAKEDVDTQTLLGTGYRNADKAGNSHLGVPHTSKEESGRRHEEILKAGLPAQDLADL 661

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L +QMH AA+ L FE AAR+RDEI+ LK   
Sbjct: 662 IRQLSEQMHTAAEQLQFELAARLRDEIRDLKKEL 695


>gi|288818056|ref|YP_003432403.1| excinuclease ABC subunit B [Hydrogenobacter thermophilus TK-6]
 gi|288787455|dbj|BAI69202.1| excinuclease ABC subunit B [Hydrogenobacter thermophilus TK-6]
 gi|308751657|gb|ADO45140.1| excinuclease ABC, B subunit [Hydrogenobacter thermophilus TK-6]
          Length = 663

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/655 (50%), Positives = 452/655 (69%), Gaps = 3/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +QT   P+GDQP AI +LL  +    K Q+LLG TG+GKTFT+A +I    +P +V+A
Sbjct: 7   FVLQTSLKPAGDQPKAIEELLNNLERGVKEQVLLGATGTGKTFTLANLIAQYNKPTLVIA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK+LAAQLY EFK  FP+NAVEYF+SYYDYYQPEAY+P  D YIEK++SIN+ ++R RH
Sbjct: 67  HNKVLAAQLYREFKELFPNNAVEYFISYYDYYQPEAYIPEKDLYIEKDASINQVLERYRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT S+LER D IVV+SVSCIYG+GS   Y  M ++L++G+ +   +LL  LV+  Y+R 
Sbjct: 127 SATISVLERRDVIVVASVSCIYGLGSPHHYYSMRIKLRVGERISTSKLLRKLVELGYQRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    R TF V  +++E+ PS  ED   R+  + ++IE I+    L    I  +E   I+
Sbjct: 187 DYTYKRATFSVRANALEVIPSDAEDRIVRIEFWDDEIERITLIDALNRHTIGELEEFTIF 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            +SHY+ PR T+  A+  I+ +L  R+   + +G+ LEA+RL QR  YDLEM+   G C+
Sbjct: 247 PSSHYIAPRSTVEDALLQIERDLIERVKWFKNQGKELEARRLYQRTMYDLEMIREIGHCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY  GR PGEPP TL +Y P+D LL +DESHVT+PQI  MY GD  RK  L EY
Sbjct: 307 GIENYSRYFDGRKPGEPPFTLLDYFPKDFLLIIDESHVTVPQIRAMYNGDRSRKEKLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           G+RLPS +DNRPL+FEE+       I VSATPG WE+++ +GIIVEQI+RPTGL+DP VE
Sbjct: 367 GWRLPSALDNRPLKFEEFLERINQVIYVSATPGDWEIQRSRGIIVEQIVRPTGLLDPEVE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  R Q+ED+  EI +  ++  R ++   TKR+AE++ +YL ER +  +YMHS++  +E
Sbjct: 427 VRPTRGQLEDLLREIQIRKKRNERAIVLTTTKRLAEEVADYLTERGVSAKYMHSDLDAIE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  II+DLR G  DV+VG+NLLREGLD+PE  LVAILDADKEGFLRS TSLIQ IGRAAR
Sbjct: 487 RARIIKDLREGSIDVIVGVNLLREGLDLPEVSLVAILDADKEGFLRSYTSLIQIIGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+N K ILYAD +T+S++ AI+ET RRREKQ +HN  H I P+S+ + + +++    +E+
Sbjct: 547 NINGKAILYADRMTESMKRAIEETRRRREKQRKHNHLHGITPRSIVKPVKDLLS---IEE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                +  +  +   S++     ++ L ++M   A    FE+AA++RDEIK+L+ 
Sbjct: 604 LDYVKVPSEIPKGIKSEEDIIRRIEKLEREMLECAKKWEFEKAAKLRDEIKKLRE 658


>gi|227546156|ref|ZP_03976205.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239621802|ref|ZP_04664833.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|312133005|ref|YP_004000344.1| uvrb [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481891|ref|ZP_07940918.1| excinuclease ABC [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688833|ref|YP_004208567.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis
           157F]
 gi|322690821|ref|YP_004220391.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|227213137|gb|EEI81009.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239514993|gb|EEQ54860.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|291517106|emb|CBK70722.1| Excinuclease ABC subunit B [Bifidobacterium longum subsp. longum
           F8]
 gi|311773991|gb|ADQ03479.1| UvrB [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916682|gb|EFV38077.1| excinuclease ABC [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455677|dbj|BAJ66299.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|320460169|dbj|BAJ70789.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis
           157F]
          Length = 703

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/694 (50%), Positives = 468/694 (67%), Gaps = 31/694 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N  +    F +++ Y PSGDQP AIA+L + I + E   +L+G TG+GKT T A +IE +
Sbjct: 4   NIERADKPFVVKSPYKPSGDQPQAIAELAERIENGENDVVLMGATGTGKTATTAWLIEKL 63

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN
Sbjct: 64  QRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNIN 123

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ++R+RH AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK+G  + + +LL   
Sbjct: 124 DDVERLRHQATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKVGQEINRDDLLRQF 183

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG +I 
Sbjct: 184 VAMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRISTLHPLTGDEID 242

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
               + I+  SHYV     +  A+K I+EEL  RL EL K+G+ LEAQRL  R TYDLEM
Sbjct: 243 EENEVHIFPASHYVAGPERMERALKTIREELDERLAELRKQGKELEAQRLNMRTTYDLEM 302

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G C  +ENYSR+  GR  G PP TL ++ P+D LL +DESHVT+PQI  MY GD  
Sbjct: 303 LTQVGVCSGVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDAS 362

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS MDNRPL++ E+      T+ +SATPG +E+    G +VEQIIRPT
Sbjct: 363 RKRTLVEHGFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYEMGLSDG-VVEQIIRPT 421

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP +++R  + Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+
Sbjct: 422 GLLDPKIDVRPVKGQIDDLLAEIKARVAKNERALVTTLTKKMAEDLTDYLLERGIKVEYL 481

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++R LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 482 HSDVDTLRRVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLI 541

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+  VI+YAD  T++++ AIDET RRR KQ+ +N++H I+P+ + +KI +V
Sbjct: 542 QTIGRAARNVSGTVIMYADETTEAMRQAIDETDRRRAKQIAYNQEHGIDPKPLIKKISDV 601

Query: 733 IDPILLEDAATTNI-----------------------------SIDAQQLSLSKKKGKAH 763
            D +  ED  T  +                               +  +  L  +     
Sbjct: 602 NDMLAKEDVDTQTLLEGGYRNAGKAGNTHLGVPVLDPNEADKRHEEILKAGLPAQDLADL 661

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L +QMH AA+ L FE AAR+RDEI+ LK   
Sbjct: 662 IRQLSEQMHTAAEQLQFELAARLRDEIRDLKKEL 695


>gi|28572626|ref|NP_789406.1| excinuclease ABC subunit B [Tropheryma whipplei TW08/27]
 gi|81839344|sp|Q83NI7|UVRB_TROW8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|28410758|emb|CAD67144.1| excinuclease ABC subunit B [Tropheryma whipplei TW08/27]
          Length = 677

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/661 (49%), Positives = 457/661 (69%), Gaps = 3/661 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
            +F++  +Y PSGDQP AI +L   I S E   +LLG TG+GK+ T+A +IE + RP ++
Sbjct: 8   KYFRLAAEYDPSGDQPKAIGELSDRIESGETDIVLLGATGTGKSATIAWLIEKLARPTLI 67

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQL +EF+ FFP NAVEYFVSYYDYYQPEAYVP+TDT+IEK++S+N +++R+
Sbjct: 68  IAHNKTLAAQLANEFRKFFPDNAVEYFVSYYDYYQPEAYVPKTDTFIEKDASVNSEVERL 127

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH AT SLL R D IVV++VSCIYG+G+   Y +   +L++G  + Q+ LL    + QY 
Sbjct: 128 RHRATTSLLTRRDVIVVATVSCIYGLGAPSEYLKAGFRLEVGQKISQRVLLERFTQLQYN 187

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+G  RG FRV GD+IEI P + E+   R+ M+G++IE +   +P+TG  +     + 
Sbjct: 188 RNDVGFERGNFRVRGDTIEIIPVY-EEYTVRIEMWGDEIERVLCLHPVTGNLLSEQRGVL 246

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SHYVT    L  A+  I++EL+ RL   ++   LLEAQRLE R  YD+E++E  G 
Sbjct: 247 IFPASHYVTSSENLKRAIVDIRKELQQRLRYFKRNNSLLEAQRLETRTEYDIELMEQLGF 306

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR++ GR PGEPP  L +Y  +D L  +DESHVT+PQI  M+ GDF RK  L 
Sbjct: 307 CSGIENYSRHIDGRAPGEPPFCLLDYFDDDFLTVIDESHVTVPQIGSMHAGDFSRKKALV 366

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E GFRLPS +DNRPL F+E+       I +SATPG +EL +  G +VEQIIRPTGLVDP 
Sbjct: 367 ENGFRLPSAIDNRPLCFDEFRQRVGQVIYLSATPGKYELSKSDG-VVEQIIRPTGLVDPK 425

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + ++  + Q++D+ +EI        R+L+T LTKRMAE+LT++L E  + V Y+HS++ T
Sbjct: 426 ITVKPIKGQIDDLLEEIRKRKLLSERVLVTTLTKRMAEELTDFLSEAGVNVSYLHSDIDT 485

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L R+E++  LR+G+ DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TS IQTIGRA
Sbjct: 486 LHRVELLTSLRMGRIDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSFIQTIGRA 545

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           AR+V+ +V +YAD +T+S+Q +IDET RRR  Q ++N+K  + P  +K+ + ++ + +  
Sbjct: 546 ARHVSGEVHMYADNMTESMQKSIDETNRRRRIQQDYNRKMGVTPVPIKKTVSDITEVLSR 605

Query: 739 EDAATTNISIDA-QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                    +D+     +  K+ K+H+KSL  +M++AA++L FEEAA +RDEI+ LK   
Sbjct: 606 PSRKIDCTILDSLPDPKIDGKQIKSHIKSLEAKMYMAAESLMFEEAAELRDEIQSLKEKF 665

Query: 798 Y 798
            
Sbjct: 666 L 666


>gi|300727772|ref|ZP_07061155.1| excinuclease ABC, B subunit [Prevotella bryantii B14]
 gi|299774967|gb|EFI71576.1| excinuclease ABC, B subunit [Prevotella bryantii B14]
          Length = 679

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/673 (47%), Positives = 461/673 (68%), Gaps = 19/673 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AI QL++GI      Q+LLGVTGSGKTFTMA VI  + +P ++++
Sbjct: 3   FNLTSNYKPTGDQPQAIKQLVEGIEQGVPAQVLLGVTGSGKTFTMANVIAKVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +INE ID++R 
Sbjct: 63  HNKTLAAQLYQEMKGFFPNNAVEYYVSYYDYYQPEAYLPTSDTYIEKDLAINEDIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            A  +LL  R D IVVSSVSCIYG+G   +  + I++LK G  +++ E L  LV   Y R
Sbjct: 123 GAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQESIIKLKKGQIIDRNEFLRKLVDDLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV G++++I  ++ +++  RVS + ++I+ I E   ++  +I + E  +I
Sbjct: 183 NDIELHRGNFRVKGETVDIAMAYSDNI-LRVSWWDDEIDSIEEVDSVSFHRIESFEQYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +      ++ I+++L  ++    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFITTKEQTEHGIRMIQDDLVKQVDYFNEIGDHIKAQRIKERVEYDIEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G+ P  L ++ P+D LL VDESHV+IPQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRQAGDRPYCLLDFFPKDYLLIVDESHVSIPQIGAMYGGDRARKQNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPL+FEE++ L    I VSATP ++ELE+ +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLKFEEFHELLNQAIYVSATPANYELEESEGIVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ DEI     +  R+L+T LTKRMAE+LTEYL   N++  Y+HS+V TL
Sbjct: 422 EVRPSENQIDDLMDEILTRIHRNERVLITTLTKRMAEELTEYLLNHNVKSAYIHSDVATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +RI+I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRIKIMNDLRAGTYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++ KVI+YAD IT+S+Q  IDET RRR  Q+++N++H I PQ + ++I   +  +  E
Sbjct: 542 RNIHGKVIMYADNITESMQKTIDETARRRMIQMKYNEEHGITPQQIVKEIKNELASVSNE 601

Query: 740 -----------------DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                            ++     + D   L+++K++ +  + +  + M +AA +L+F +
Sbjct: 602 NEPARTRNMDKTNNVYHESEVGTFAADPIVLNMTKEQLEKSIANTTRLMKMAAKDLDFMQ 661

Query: 783 AARIRDEIKRLKS 795
           AA+ RDEI +L+ 
Sbjct: 662 AAQYRDEIVKLQE 674


>gi|302336092|ref|YP_003801299.1| Excinuclease ABC subunit B [Olsenella uli DSM 7084]
 gi|301319932|gb|ADK68419.1| Excinuclease ABC subunit B [Olsenella uli DSM 7084]
          Length = 771

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/689 (51%), Positives = 469/689 (68%), Gaps = 28/689 (4%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ + Y P+GDQP AIA+L +GI    + Q LLGVTGSGKTF+MAK IEA QRP ++M P
Sbjct: 60  EVVSPYEPAGDQPKAIARLARGIEDGLRYQTLLGVTGSGKTFSMAKTIEATQRPTLIMEP 119

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK LAAQ+ SE K  FPHNAV YFVSYYDYYQPEAYVP+TDTYIEK++SINE+++++RH 
Sbjct: 120 NKTLAAQVASEMKELFPHNAVVYFVSYYDYYQPEAYVPQTDTYIEKDASINEEVEKLRHQ 179

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT SLL R D IVV+SVSCIYGIGS + Y+ +   +     +E+ +L+  L+  QY R D
Sbjct: 180 ATSSLLSRRDVIVVASVSCIYGIGSPQDYAGLAPNVDKSVPLERDDLIRELIDIQYDRND 239

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
             + RGTFRV GD+I++FP + E+   RVS FG+++E I+E   +TG+ +R  + I I+ 
Sbjct: 240 YDLSRGTFRVRGDTIDVFPPYAEN-PLRVSFFGDEVELIAEIDNVTGEIVREFDAIPIWP 298

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            SHYVT RP +  A+K I EEL+ R+ EL+    LLEAQRL QR  YDLEMLET G C  
Sbjct: 299 ASHYVTERPKITHAIKTISEELEGRVKELKDNDMLLEAQRLSQRTGYDLEMLETMGYCSG 358

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSR++ GR  GEPP TL +Y P+D L  +DESHVT+PQI GMY GD  RK TL E+G
Sbjct: 359 IENYSRHMDGRKAGEPPYTLIDYFPKDMLCIIDESHVTVPQIRGMYEGDRSRKVTLVEHG 418

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPS +DNRPLRF+E+       + VSATPG +E    Q   VEQ+IRPTGL+DP VE+
Sbjct: 419 FRLPSALDNRPLRFDEFEQRIGQFVYVSATPGDYEEGVSQQE-VEQVIRPTGLLDPKVEV 477

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R  R Q++D+ +EI     +  R+L+T LTKRMAEDLT++L +  ++V YMHS+  TL+R
Sbjct: 478 RPVRGQIDDLIEEIKDRTSRKERVLVTTLTKRMAEDLTDHLLDEGVKVNYMHSDTATLDR 537

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           +EIIRDLR+GK  VLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQT+GRAARN
Sbjct: 538 VEIIRDLRIGKISVLVGINLLREGLDIPEVSLVAILDADKEGFLRNRRSLIQTMGRAARN 597

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
              +VI+YADT+T S++ A+ ET RRR  Q  +N +H I P+++++ I +V   I   D 
Sbjct: 598 AQGEVIMYADTVTDSMREAMGETARRRSIQEAYNSEHGIVPKTIRKSITDVASFIEDADK 657

Query: 742 ATTNISIDA--------------------------QQLSLSKKKGKAHLKSLRKQMHLAA 775
             +  S +                           +  +L  ++    + +L  +M  A+
Sbjct: 658 TLSTKSREGGEFFTAPAGEGPTGTEHERTIDSVARELAALPPEEAGKVMGALEDEMVQAS 717

Query: 776 DNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
            +++FE AA++RD+I  L+        +D
Sbjct: 718 VDMDFERAAQLRDQIVELRGRLDGSSEED 746


>gi|163786024|ref|ZP_02180472.1| excinuclease ABC subunit B [Flavobacteriales bacterium ALC-1]
 gi|159877884|gb|EDP71940.1| excinuclease ABC subunit B [Flavobacteriales bacterium ALC-1]
          Length = 668

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/661 (51%), Positives = 461/661 (69%), Gaps = 5/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++++ P+GDQP AI QL  GI S+EK Q LLGVTGSGKTFT+A VIE +QRP +V+A
Sbjct: 3   FKIESEFKPTGDQPEAIKQLAGGIKSKEKYQTLLGVTGSGKTFTVANVIEEVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P +  YIEK+ SINE+I++MR 
Sbjct: 63  HNKTLAAQLYSEFKQFFPDNAVEYFVSYYDYYQPEAYIPVSGVYIEKDLSINEEIEKMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IVV+SVSC+YGIG+   + + ++ ++    + + +LL  LV+  Y R
Sbjct: 123 STTSSLLSGRRDVIVVASVSCLYGIGNPVEFQKNVISIERDQVISRTKLLHQLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +     G FR+ GD++++FP + ++ A+R+  FG++IEEI  F   T + I   + + I
Sbjct: 183 TEAEFKNGNFRIKGDTVDVFPGYSDN-AFRIHFFGDEIEEIEAFDARTNEIIERYDRLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    LN A+K I+++L  +    ++ G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLNGAIKDIQDDLVKQHDYFKEIGKHLEAKRLKERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ VDESHVTI Q+  MY GD  RK  L +
Sbjct: 302 SGIENYSRYLDGRAPGTRPFCLLDYFPDDFLMVVDESHVTISQVHAMYGGDRSRKVNLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +E+++  G+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYEMQKTDGVYVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++++ +EI    ++  R L+T LTKRMAE+L +YL   +IR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDNLIEEIQDRVEKDERTLVTTLTKRMAEELVKYLTRISIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRKGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSTRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N K I+YAD ITKS+Q  IDET  RREKQ+ +N KHNI P+++ + +   +    + 
Sbjct: 542 RNLNGKAIMYADKITKSMQKTIDETEYRREKQIAYNTKHNIKPKALNKSLDSALAKNSVS 601

Query: 740 DAATT---NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T     I+ + +   L+K + +  ++  RKQM LAA  L+F EAA  RDEI   +S 
Sbjct: 602 TYRTELDAKIAAEPESEYLTKSQLEKKIREKRKQMELAAKALDFMEAAHFRDEIMAYQSK 661

Query: 797 P 797
            
Sbjct: 662 L 662


>gi|325958855|ref|YP_004290321.1| UvrABC system protein B [Methanobacterium sp. AL-21]
 gi|325330287|gb|ADZ09349.1| UvrABC system protein B [Methanobacterium sp. AL-21]
          Length = 653

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/659 (50%), Positives = 457/659 (69%), Gaps = 11/659 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ + Y P GDQP AI  + +G +   K Q LLGVTGSGKTFTMA V++ +++P +
Sbjct: 1   MSEFKLISPYKPLGDQPKAIKSISEGFNKGLKHQTLLGVTGSGKTFTMANVVKEVKKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+ ++DTYI+KE+ IN++ID 
Sbjct: 61  VISHNKTLAAQLYEEFKEFFPDNAVEYFVSYYDYYQPEAYIAQSDTYIDKEAQINDEIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MRHS T+SLL R+D IVVSSVSCIYGIGS E Y  +I+ +++GDS  +++++ +L+  QY
Sbjct: 121 MRHSTTQSLLTRDDVIVVSSVSCIYGIGSPEDYGGLILSVEVGDSDGREKIIRTLIDMQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   RG FRV GD +EI P+   ++  R+ +FG++++ IS   PL G   R+++ +
Sbjct: 181 ERNDIDFTRGKFRVRGDVVEIRPAQG-NIGIRIELFGDEVDRISLIDPLLGSVKRDMDRV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++   H+VT +  + +A+  I++EL+ RL  L  + +L+EAQRLEQR  +D+EML+  G
Sbjct: 240 VVFPAKHFVTSKDKIESAITNIEKELEERLTVLHSQNKLVEAQRLEQRTRFDMEMLQEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYS +L+GR  GE P TL +Y P+D L  +DESHVT+PQI GMY GD  RK +L
Sbjct: 300 YCTGIENYSMHLSGRKWGETPITLMQYFPDDFLTIIDESHVTVPQIGGMYAGDRARKDSL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  +NRPL F E+  ++   + VSATP  +EL   Q  +VEQIIRPTGLVDP
Sbjct: 360 VDHGFRLPSARENRPLNFSEFEMIQNQVLYVSATPAKYELGISQN-MVEQIIRPTGLVDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + ++    QV+ +   I    ++  R+L+T LTK+MAEDLT+Y  +  I+VRY+HS++ 
Sbjct: 419 EIIVKPVVGQVDHLLGAIKAKVEKDQRVLVTTLTKKMAEDLTDYYAKVGIKVRYLHSDIT 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERI+II +LR G FD LVG+NLLREGLD+PE  LV ILDADKEGFLRSKTSLIQTIGR
Sbjct: 479 TLERIDIIDELRRGSFDCLVGVNLLREGLDLPEVALVGILDADKEGFLRSKTSLIQTIGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VI+YAD IT SI  A++ T  RR+ Q+ +NK++ INP+S    + E      
Sbjct: 539 AARNVEGQVIIYADKITDSISSAVEITNERRKLQMAYNKENGINPKSTVRSVKE------ 592

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                  +  I      + K +    +K L   M  A+  L+FE AA+IRD+I+ L+ +
Sbjct: 593 ---KTKKDTKIRDNVKDIPKDELLLLIKDLEADMKKASQKLDFETAAKIRDKIQFLEGA 648


>gi|309801200|ref|ZP_07695329.1| excinuclease ABC, B subunit [Bifidobacterium dentium JCVIHMP022]
 gi|308222089|gb|EFO78372.1| excinuclease ABC, B subunit [Bifidobacterium dentium JCVIHMP022]
          Length = 706

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/694 (50%), Positives = 465/694 (67%), Gaps = 31/694 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
              +    F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +
Sbjct: 7   EIERVDKPFVVKSPYRPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERL 66

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN
Sbjct: 67  QRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNIN 126

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ++R+RH+AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK G  +++ ELL   
Sbjct: 127 DDVERLRHAATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKEGQQIDRDELLRMF 186

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I 
Sbjct: 187 VSMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDHISTLHPLTGDVID 245

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           +   + I+  SHYV     +  A+  IKEEL  R+ EL K+G+ LEAQRL  R TYDLEM
Sbjct: 246 HEPQVHIFPASHYVAGPERMERALATIKEELDQRVAELRKQGKELEAQRLTMRTTYDLEM 305

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G C  +ENYSR+  GR PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  
Sbjct: 306 LTQVGVCSGVENYSRHFDGREPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDAS 365

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPT
Sbjct: 366 RKRTLVEHGFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYELGLSDG-VVEQIIRPT 424

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +++R    Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+
Sbjct: 425 GLVDPKIDVRPVDGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYL 484

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 485 HSDVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLI 544

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+  VI+YAD +T+++  AIDET RRR+ Q+ +NK+H I+P+ + +KI +V
Sbjct: 545 QTIGRAARNVSGTVIMYADDVTEAMHKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDV 604

Query: 733 IDPILLEDAATTNI-----------------------------SIDAQQLSLSKKKGKAH 763
            D +  ED  T  +                               +  +  L  +     
Sbjct: 605 NDMLAKEDVDTQTLLGTGYRNADKAGNSHLGVPTFDRSESDKRHEEILKAGLPAQDLADL 664

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L  QMH AA+ L FE AAR+RDEI+ LK   
Sbjct: 665 IRQLSDQMHTAAEQLQFELAARLRDEIRDLKKEL 698


>gi|167628796|ref|YP_001679295.1| excinuclease abc, b subunit [Heliobacterium modesticaldum Ice1]
 gi|167591536|gb|ABZ83284.1| excinuclease abc, b subunit [Heliobacterium modesticaldum Ice1]
          Length = 830

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/599 (56%), Positives = 441/599 (73%), Gaps = 1/599 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             FQ+++++ P GDQP AIA+L++GI    + Q LLG TG+GKTFTMA VIE +QRP +V
Sbjct: 4   RLFQLKSEFVPKGDQPQAIARLVEGIEKGMRYQTLLGATGTGKTFTMASVIEKVQRPTLV 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQL +EFK FFP NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++
Sbjct: 64  LAHNKTLAAQLCAEFKEFFPDNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RH+AT +L+ER D I+V+SVSCIYG+GS E Y   ++ L+ G   ++  +L  LV  QY 
Sbjct: 124 RHAATAALIERRDVIIVASVSCIYGLGSPEEYLDQMISLRKGQIYDRDAVLRRLVDIQYS 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +I   RGTFRV GD +E+FP+   D A R+  FG+++E ISE   LTG+       I 
Sbjct: 184 RNNINFTRGTFRVRGDVVEVFPASYSDRAVRLEFFGDELERISEIDTLTGEVYGERYHIS 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+ N+HYVT    L  ++  I+ EL+ RL   +++G+L+EAQRL QR  YD+EML   G 
Sbjct: 244 IFPNTHYVTNWDKLELSIANIEAELEERLAWFKEQGKLVEAQRLAQRTRYDIEMLREMGF 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+LT R PGEPP TL  + P+D LL VDESHVTIPQ+  MY+GD  RK TL 
Sbjct: 304 CTGIENYSRHLTFRPPGEPPYTLMHFFPKDFLLMVDESHVTIPQVGAMYQGDRSRKMTLI 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPS  DNRPL+F E+  +    + VSATP  +EL++ +  +VEQIIRPTGL+DP 
Sbjct: 364 EHGFRLPSAADNRPLKFHEFEQMLNQVVFVSATPADYELQRSEQ-VVEQIIRPTGLIDPV 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +++R  + Q++D+  EI    ++  R+L+T LTK+MAEDLT YL    +RVR+MHS+V  
Sbjct: 423 IDVRPVKGQIDDLLGEIRERIKKDQRVLVTTLTKKMAEDLTAYLRNVGVRVRWMHSDVDA 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER++IIRDLRLG+FDVLVGINLLREGLD+PE GLVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 483 IERMQIIRDLRLGEFDVLVGINLLREGLDLPEVGLVAILDADKEGFLRSDRSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           ARNV   VI+Y D +T+S+Q AIDET RRR  Q+ +N++  I PQ+VK+ +  VI+  +
Sbjct: 543 ARNVEGTVIMYGDRLTRSMQKAIDETNRRRAIQIAYNEQQGITPQTVKKAVRNVIEMTI 601



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 728 KIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           ++ E + P    +AA       ++  +++ ++  A +  L  +M  AA  L+FE AA +R
Sbjct: 690 RVAEGLPPEEGFEAAAPERVASSE--AMAPEQLAALIADLEGEMRQAAKELDFERAALLR 747

Query: 788 DEIKRLKSSP 797
           D I  LK + 
Sbjct: 748 DVIIELKGAA 757


>gi|15606895|ref|NP_214276.1| excinuclease ABC subunit B [Aquifex aeolicus VF5]
 gi|8134784|sp|O67708|UVRB_AQUAE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|2984128|gb|AAC07664.1| repair excision nuclease subunit B [Aquifex aeolicus VF5]
          Length = 663

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/650 (52%), Positives = 451/650 (69%), Gaps = 4/650 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++T+  P+GDQP AI +LL+ +    K Q LLGVTGSGKTFT+A VI    +P +V+ 
Sbjct: 8   FKLKTNLKPAGDQPKAIKKLLENLRKGVKEQTLLGVTGSGKTFTLANVIAKYNKPTLVVV 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NKILAAQLY EFK  FP NAVEYFVSYYDYYQPEAY+P  D YIEK++SINE ++R RH
Sbjct: 68  HNKILAAQLYREFKELFPENAVEYFVSYYDYYQPEAYIPEKDLYIEKDASINETLERFRH 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT S+LER D IVV+SVSCIYG+G  E Y  + ++L+ G  +   +LL  LV+  Y+R 
Sbjct: 128 SATISVLERRDVIVVASVSCIYGLGKPEHYENLRIKLQRGIRLNLSKLLRKLVELGYQRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I R TF V GD +EI PSH ED   RV  + +++E I     L    I+ VE   ++
Sbjct: 188 DFAIKRATFSVRGDVVEIVPSHTEDYLVRVEFWDDEVERIVLMDALNRHVIKEVEEYSVF 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY+ PRPT+  A+K I+++L  R+   + +GR +EAQRL QR  YD+EM+   G C+
Sbjct: 248 PASHYIAPRPTVEQALKEIEKDLIERVKWFKSQGREVEAQRLYQRTMYDIEMIRELGHCK 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY  GR PGEPP TL +Y PED LL +DESH+TIPQ+  MY GD  RK  L EY
Sbjct: 308 GIENYSRYFDGRKPGEPPFTLLDYFPEDFLLIIDESHMTIPQLRAMYNGDRSRKEKLVEY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           G+RLPS +DNRPL+FEE+       I VSATPG WELE+ +  +VEQI+RPTGL+DP VE
Sbjct: 368 GWRLPSALDNRPLKFEEFLERINQVIYVSATPGDWELERSEA-VVEQIVRPTGLLDPVVE 426

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q+E++  EI    ++  R L+   TKR+AE++ +YL ER IR +YMHSE+  +E
Sbjct: 427 VRPKMNQLENLVKEIKEVKKRKERALVLTTTKRLAEEIADYLTERKIRAKYMHSELDAIE 486

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R ++IR+LR G  DV+VG+NLLREGLD+PE  LVAI+DADKEGFLRS  +LIQTIGRAAR
Sbjct: 487 RAQLIRELREGSIDVIVGVNLLREGLDLPEVSLVAIMDADKEGFLRSYQALIQTIGRAAR 546

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N++ K ILYAD ITK+++ AI ET RRR+ Q E NKKH I P+S+K+ + E++    +E+
Sbjct: 547 NIHGKAILYADRITKAMEKAIQETQRRRKIQEEFNKKHGITPKSIKKPVKELL---AIEE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
               ++  +  +   S++     ++ L K+M   A N  FE+AA++RDEI
Sbjct: 604 LDYVSVPEELPKGVKSEEDILKKIEKLEKEMWKYAQNWEFEKAAKVRDEI 653


>gi|283455816|ref|YP_003360380.1| excinuclease ABC subunit B [Bifidobacterium dentium Bd1]
 gi|283102450|gb|ADB09556.1| Excinuclease ABC subunit B [Bifidobacterium dentium Bd1]
          Length = 706

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/694 (50%), Positives = 465/694 (67%), Gaps = 31/694 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
              +    F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +
Sbjct: 7   EIERVDKPFVVKSPYRPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERL 66

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN
Sbjct: 67  QRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNIN 126

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ++R+RH+AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK G  +++ ELL   
Sbjct: 127 DDVERLRHAATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKEGQQIDRDELLRMF 186

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I 
Sbjct: 187 VSMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDHISTLHPLTGDVID 245

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           +   + I+  SHYV     +  A+  IKEEL  R+ EL K+G+ LEAQRL  R TYDLEM
Sbjct: 246 HEPQVHIFPASHYVAGPERMERALATIKEELDQRVAELRKQGKELEAQRLTMRTTYDLEM 305

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G C  +ENYSR+  GR PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  
Sbjct: 306 LTQVGVCSGVENYSRHFDGREPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDAS 365

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPT
Sbjct: 366 RKRTLVEHGFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYELGLSDG-VVEQIIRPT 424

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +++R    Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+
Sbjct: 425 GLVDPKIDVRPVEGQIDDLLAEIKDRVARNERALVTTLTKKMAEDLTDYLLERGIKVEYL 484

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 485 HSDVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLI 544

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+  VI+YAD +T+++  AIDET RRR+ Q+ +NK+H I+P+ + +KI +V
Sbjct: 545 QTIGRAARNVSGTVIMYADDVTEAMHKAIDETNRRRDIQIAYNKEHGIDPKPLIKKISDV 604

Query: 733 IDPILLEDAATTNI-----------------------------SIDAQQLSLSKKKGKAH 763
            D +  ED  T  +                               +  +  L  +     
Sbjct: 605 NDMLAKEDVDTQTLLGTGYRNADKAGNSHLGVPTFDRSESDKRHEEILKAGLPAQDLADL 664

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L  QMH AA+ L FE AAR+RDEI+ LK   
Sbjct: 665 IRQLSDQMHTAAEQLQFELAARLRDEIRDLKKEL 698


>gi|224282842|ref|ZP_03646164.1| excinuclease ABC subunit B [Bifidobacterium bifidum NCIMB 41171]
 gi|313140001|ref|ZP_07802194.1| UvrABC system protein B [Bifidobacterium bifidum NCIMB 41171]
 gi|313132511|gb|EFR50128.1| UvrABC system protein B [Bifidobacterium bifidum NCIMB 41171]
          Length = 703

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/694 (50%), Positives = 469/694 (67%), Gaps = 31/694 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N  +    F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +
Sbjct: 4   NIERADKPFVVKSPYKPSGDQPQAIEELATRIENGENDVVLMGATGTGKTATTAWLIERL 63

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN
Sbjct: 64  QRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNIN 123

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ++R+RH AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ L+ G  +++ +LL   
Sbjct: 124 DDVERLRHQATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLQEGQQIDRDQLLRKF 183

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I 
Sbjct: 184 VGMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVID 242

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           +  ++ I+  SHYV     +  A+K IKEEL  R+ EL+K+G+ LEAQRL  R TYDLEM
Sbjct: 243 HETSVHIFPASHYVAGPERMEHALKTIKEELDQRVAELKKQGKELEAQRLTMRTTYDLEM 302

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G C  +ENYSR+   R PG PP TL ++ P+D LL +DESHVT+PQI  MY GD  
Sbjct: 303 LTQVGVCSGVENYSRHFDNRAPGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDAS 362

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPT
Sbjct: 363 RKRTLVEHGFRLPSAMDNRPLKWPEFLDRVGQTVYLSATPGDYELGLSDG-VVEQIIRPT 421

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GLVDP +++R  + Q++D+  EI     +  R L+T LTK+MAEDL +YL ER I+V Y+
Sbjct: 422 GLVDPKIDVRPTKGQIDDLLAEIKDRVDKNERTLVTTLTKKMAEDLADYLLERGIKVEYL 481

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 482 HSDVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLI 541

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+  VI+YAD  T +++ AIDET RRR +Q+ +NK+H I+P+ + +KI +V
Sbjct: 542 QTIGRAARNVSGTVIMYADETTDAMRKAIDETDRRRVRQIAYNKEHGIDPKPLIKKISDV 601

Query: 733 IDPILLEDAATTNI----------------------SIDAQ-------QLSLSKKKGKAH 763
            D +  ED  T  +                      + +A        +  L  +     
Sbjct: 602 NDMLAKEDVDTATLLEGGYRNAGKAGNTHLGVPSLDAAEADKRHEEILKAGLPAQDLADL 661

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L +QMH AA+ L FE AAR+RDEI+ LK   
Sbjct: 662 IRQLSEQMHTAAEQLQFELAARLRDEIRDLKKEL 695


>gi|308235368|ref|ZP_07666105.1| excinuclease ABC subunit B [Gardnerella vaginalis ATCC 14018]
 gi|311114861|ref|YP_003986082.1| excision endonuclease subunit UvrB [Gardnerella vaginalis ATCC
           14019]
 gi|310946355|gb|ADP39059.1| excision endonuclease subunit UvrB [Gardnerella vaginalis ATCC
           14019]
          Length = 704

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/704 (49%), Positives = 479/704 (68%), Gaps = 34/704 (4%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
           N   +    F ++  Y+PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE 
Sbjct: 3   NKIQRTNKPFVVKAPYNPSGDQPQAIEELANRIENGENDVVLMGATGTGKTATTAWLIER 62

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+I
Sbjct: 63  LQRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNI 122

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           N+ ++R+RH+AT +LL R DC+VV++VSCIYG+G+ E Y++ ++ L +G+ +E+ +LL  
Sbjct: 123 NDDVERLRHAATANLLTRRDCVVVATVSCIYGLGTPEEYAERMLMLSVGEQLERDDLLRQ 182

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
            V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ I+  +PLTG+ I
Sbjct: 183 FVNMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRITMLHPLTGEVI 241

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
           R   ++ I+  SHY+     +  A++ I++E   R+ +L+K+ +LLEAQRLE R TYDLE
Sbjct: 242 RQESSVHIFPASHYIAGPERMERALEAIEKERDERVAQLKKQNKLLEAQRLEMRTTYDLE 301

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           ML   G C  +ENYSR+  GR  G PP TL ++ P+D LL +DESHVT+PQI  MY GD 
Sbjct: 302 MLRQVGVCPGVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVLDESHVTVPQIGAMYEGDA 361

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK TL E+GFRLPS MDNRPL+++E+      T+ +SATPG +EL    G +VEQIIRP
Sbjct: 362 SRKRTLVEHGFRLPSAMDNRPLKWKEFLEHVGQTVYLSATPGDYELGLSDG-VVEQIIRP 420

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP +E+R    QV+D+  EI     +  R+L+T LTK+MAEDLT+Y  E  I+V Y
Sbjct: 421 TGLLDPKIEVRPVEGQVDDLLAEIKARVAKDERVLVTTLTKKMAEDLTDYFLELGIKVEY 480

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS+V TL R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SL
Sbjct: 481 LHSDVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSL 540

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARNV+  V++YAD++T ++  AI ET RRREKQ+ +NK H I+P+ +++KI +
Sbjct: 541 IQTIGRAARNVSGTVLMYADSVTDAMSKAISETERRREKQIAYNKAHGIDPKPLRKKISD 600

Query: 732 VIDPILLEDAAT------------------------------TNISIDAQQLSLSKKKGK 761
           V D +  ED  T                              +     A    L +    
Sbjct: 601 VNDMLAKEDVDTQTLLVGGYRNANKAGNSHYGVPKEPNLGQQSKEKRMANISELPQDDIM 660

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           + +K+L +QMH+AA+ L FE AAR+RDEI+ LK     + +D++
Sbjct: 661 SLIKNLSEQMHVAAEQLQFELAARLRDEIRDLKKE--LRQMDEA 702


>gi|283783088|ref|YP_003373842.1| excinuclease ABC, B subunit [Gardnerella vaginalis 409-05]
 gi|283441612|gb|ADB14078.1| excinuclease ABC, B subunit [Gardnerella vaginalis 409-05]
          Length = 704

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/704 (49%), Positives = 478/704 (67%), Gaps = 34/704 (4%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
           N   +    F ++  Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE 
Sbjct: 3   NKIQRTNKPFVVKAPYKPSGDQPQAIDELANRIENGENDVVLMGATGTGKTATTAWLIER 62

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+I
Sbjct: 63  LQRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNI 122

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           N+ ++R+RH+AT +LL R DC+VV++VSCIYG+G+ E Y++ ++ L +G+ +E+ +LL  
Sbjct: 123 NDDVERLRHAATANLLTRRDCVVVATVSCIYGLGTPEEYAERMLMLSVGEQLERDDLLRQ 182

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
            V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ I+  +PLTG+ I
Sbjct: 183 FVSMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRITMLHPLTGEVI 241

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
           R   ++ I+  SHY+     +  A++ I++E   R+ +L+K+ +LLEAQRLE R TYDLE
Sbjct: 242 RQESSVHIFPASHYIAGPERMERALEAIEKERDERVAQLKKQNKLLEAQRLEMRTTYDLE 301

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           ML   G C  +ENYSR+  GR+ G PP TL ++ P+D LL +DESHVT+PQI  MY GD 
Sbjct: 302 MLRQVGVCPGVENYSRHFDGRDAGTPPHTLLDFFPDDFLLVLDESHVTVPQIGAMYEGDA 361

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK TL E+GFRLPS MDNRPL+++E+      T+ +SATPG +EL    G +VEQIIRP
Sbjct: 362 SRKRTLVEHGFRLPSAMDNRPLKWKEFLEHVGQTVYLSATPGDYELGLSDG-VVEQIIRP 420

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP +E+R    QV+D+  EI     +  R+L+T LTK+MAEDLT+Y  E  I+V Y
Sbjct: 421 TGLLDPKIEVRPVEGQVDDLLAEIKERVAKDERVLVTTLTKKMAEDLTDYFLELGIKVEY 480

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS+V TL R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SL
Sbjct: 481 LHSDVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSL 540

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARNV+  V++YADT+T ++  AI ET RRREKQ+ +NK H I+P+ +++KI +
Sbjct: 541 IQTIGRAARNVSGTVLMYADTVTDAMSKAISETERRREKQIAYNKAHGIDPKPLRKKISD 600

Query: 732 VIDPILLEDAATTNISID------------------------------AQQLSLSKKKGK 761
           V D +  ED  T  +                                 A    L +    
Sbjct: 601 VNDMLAKEDVDTQTLLAGGYRNANKAGNSHYGVPKEPNLGQQSKEKRMANVSELPQDDIM 660

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           + +K+L +QMH+AA+ L FE AAR+RDEI+ LK     + + D+
Sbjct: 661 SLIKNLSEQMHVAAEQLQFELAARLRDEIRDLKKE--LRQISDA 702


>gi|327404594|ref|YP_004345432.1| UvrABC system protein B [Fluviicola taffensis DSM 16823]
 gi|327320102|gb|AEA44594.1| UvrABC system protein B [Fluviicola taffensis DSM 16823]
          Length = 674

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/671 (47%), Positives = 456/671 (67%), Gaps = 16/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +++ P+GDQP AI QL+KGI      Q LLGVTGSGKTFTMA VI+   +P ++++
Sbjct: 3   FQLVSEFKPTGDQPEAIKQLVKGIDDGHFAQTLLGVTGSGKTFTMANVIQQTGKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+N+VEYFVSYYDYYQPEAY+P TDT+IEK+  IN++I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPNNSVEYFVSYYDYYQPEAYLPVTDTFIEKDMQINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT +LL  R D IV++SVSCIYGIG+   ++  I+ + +G    + + L  LV+  Y R
Sbjct: 123 SATSALLSGRRDVIVIASVSCIYGIGNPNEFANSIIPIHVGQLFPRNKFLLRLVENLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +    RGTFRV GD+++I  ++  D A RV  +G++IE I    P    +I   + I+I
Sbjct: 183 TEAEFKRGTFRVKGDTVDIHLAYA-DYALRVEFWGDEIERIRTIDPENNSEIEIFQEIQI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +V+   T   A+  I E++ +++   ++E ++LEA+RLE+R +YD+EM+   G C
Sbjct: 242 YPANIFVSSPETTRKAIDQIGEDMVIQVENFKREKKILEAKRLEERTSYDMEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY   R PG  P  L +Y P+D L+ VDESHVT+PQI  MY GD  RK  L +
Sbjct: 302 SGIENYSRYFDQREPGTRPFCLLDYFPDDYLMIVDESHVTMPQIRAMYGGDRARKINLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFR+ + MDNRPL F+E+  L    + VSATP  +ELEQ +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRIQAAMDNRPLMFDEFQTLINQIVYVSATPADYELEQSEGVVVEQLIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +E+ L  ++  R L+T LTKRMAE+L +YL +  I  RY+HS++ T+
Sbjct: 422 EVRPSLNQIDDLIEEMQLRIEKDERTLVTTLTKRMAEELQKYLDKLGIACRYIHSDIDTI 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R LRLG+FDVL+G+NLLREGLD+PE  LVAI+DADKEGFLR++ SL+QT+GRAA
Sbjct: 482 ERVEILRQLRLGEFDVLIGVNLLREGLDLPEVSLVAIIDADKEGFLRNERSLVQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N +VI+YAD +TKS++  I ET RRR  Q+E+N+ H + P ++ +    ++    + 
Sbjct: 542 RNINGRVIMYADKMTKSMERTISETERRRAMQIEYNEAHGLVPTALNKSTEVILKSTKVA 601

Query: 740 D--------------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           D              A T   + +        ++ +  + + RKQM  AA +L+F EAAR
Sbjct: 602 DGDPETRSQKYTPYEAGTGLFAAEPTVNYKDPEELEKAIGAKRKQMEKAAKDLDFIEAAR 661

Query: 786 IRDEIKRLKSS 796
           +RDE+  L++ 
Sbjct: 662 LRDELFELQAR 672


>gi|189501743|ref|YP_001957460.1| excinuclease ABC subunit B [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497184|gb|ACE05731.1| hypothetical protein Aasi_0293 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 676

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/665 (49%), Positives = 461/665 (69%), Gaps = 11/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQP AI QL+ GI++ E+ Q LLGVTGSGKTFTMA VI+A+ +P +VM+
Sbjct: 3   FKLTAPYQPTGDQPQAIQQLVHGINTGERSQTLLGVTGSGKTFTMANVIQAVNKPTLVMS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E +NFFP NAVEYFVSYYDYYQPEAY+P T+ YIEK+ SIN++++++R 
Sbjct: 63  HNKTLAAQLYGELRNFFPENAVEYFVSYYDYYQPEAYIPATNVYIEKDLSINDELEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT +LL  R D I+V+SVSCIYGIG+ E + + I++L++G+ + + +LL + V   Y R
Sbjct: 123 RATSALLTGRRDVIIVASVSCIYGIGNPEEFGKNILRLQVGERIARNKLLLNFVDMLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +    RG FRV GD+I+IF ++  D A+R   +G++IE I    P TGQK+     + I
Sbjct: 183 NEQEFSRGHFRVKGDTIDIFLAYA-DYAYRFLFWGDEIEAIHSIDPNTGQKLSEERQVLI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VT + TL  A+  I+++L  ++   E EGR  EA+R+++R   DLEM+   G C
Sbjct: 242 FPANLFVTSKDTLQQAIHEIQDDLVAQIKFFENEGRFDEAKRIQERTELDLEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY   R PG  P  L +Y P+D LL +DESHVTIPQI  M+ GD  RK  L +
Sbjct: 302 SGIENYSRYFDKRQPGMRPFCLVDYFPKDYLLMIDESHVTIPQIRAMWGGDRARKVNLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
             FRLP+ +DNRPL F E+  L    I VSATP  +EL   +G++VEQ+IRPTGL+DP +
Sbjct: 362 NAFRLPAALDNRPLNFNEFETLINQVIFVSATPSDYELRHSEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +E+    ++  R+L+T LTKRMAE+LT+YL    ++  Y+HSE+KTL
Sbjct: 422 EVRPSLNQIDDLLNEVADRIKKKERVLITTLTKRMAEELTKYLERAGVKCSYIHSEIKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERI+I+RDLRLG  DVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL+QTIGRAA
Sbjct: 482 ERIDILRDLRLGVIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNVKSLVQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN + KVI+YADTITKS++ AIDET+RRR  Q+E+N KHNI P+SV +    +++   + 
Sbjct: 542 RNEDGKVIMYADTITKSMETAIDETSRRRSIQMEYNLKHNITPRSVHKSREAILEQTKVG 601

Query: 740 D---------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           D             +++ D     + + +    +++  K+M  AAD L+F EA R+++E+
Sbjct: 602 DTPQAAQYYVEKEPSVAADPIIPYMRRDELDKLIQATEKKMLAAADKLDFIEAERLKNEL 661

Query: 791 KRLKS 795
           + LK 
Sbjct: 662 EALKQ 666


>gi|312130377|ref|YP_003997717.1| excinuclease abc, b subunit [Leadbetterella byssophila DSM 17132]
 gi|311906923|gb|ADQ17364.1| excinuclease ABC, B subunit [Leadbetterella byssophila DSM 17132]
          Length = 674

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/669 (49%), Positives = 462/669 (69%), Gaps = 13/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + + P+GDQP AI QL+  + S EK  +LLGVTGSGKTFT+A VI+ +  P ++++
Sbjct: 3   YKLTSAFQPTGDQPQAIEQLVASVQSGEKATVLLGVTGSGKTFTIANVIQRLDMPVLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+  T+TYIEK+  IN++ID++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPENAVEYFISYYDYYQPEAYIATTNTYIEKDLMINQEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S   SL+  R D IVV+SVSCIYG G+   + Q IV++ +GD++ +  LL  LV   Y R
Sbjct: 123 STVSSLMSGRKDVIVVASVSCIYGAGNPNEFKQSIVKVGVGDTISRNRLLYDLVAILYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +    RGTFRV GD+++I+P +  D A R+  +G+++EEI    P +G+KI++   I I
Sbjct: 183 TEAEFNRGTFRVKGDTVDIYPGYA-DFAIRIIFWGDEVEEIQTIDPHSGKKIKSETKISI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VT +  L T+++ I+++L  ++   E EGR +EA+R+++R  +DLEM+   G C
Sbjct: 242 FPANLFVTGKDALQTSIRQIQDDLVTQIKYFESEGRQIEAERIQERTEFDLEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY   R PGE P  L +Y  +D LL VDESHV+IPQI  MY GD  RK +L E
Sbjct: 302 NGIENYSRYFDRRMPGERPFCLLDYFQDDFLLVVDESHVSIPQIGAMYGGDRSRKTSLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL F+E+  L P TI VSATP ++EL +  G++VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPSALDNRPLTFQEFEQLTPQTIYVSATPANYELNKAGGVVVEQIIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EIN   ++  R L+T LTKRMAE+L+ YL    I+V Y+HSE+KT+
Sbjct: 422 EVRPSLNQIDDLLEEINDRIKKEERTLVTTLTKRMAEELSRYLERIGIKVAYIHSEIKTM 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EI+R+LRLG  DVLVG+NLLREGLD+PE  LVAI+DADKEGFLR   SLIQTIGRAA
Sbjct: 482 DRVEILRELRLGTIDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRDNRSLIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N KVI+YAD IT S+Q AIDET RRR  Q+E+NK H I P+++ +    +++   + 
Sbjct: 542 RNSNGKVIMYADKITGSMQQAIDETQRRRAIQMEYNKAHGITPKTILKSKEAIMEQTSIA 601

Query: 740 D-----------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           D               NI+ D     ++K++ +  ++  +  M  AA  LNF +AAR RD
Sbjct: 602 DFKAVPKSYYVEPDKANIAADPVVAYMNKEQLEKLMQEAKSNMEKAASELNFLQAARYRD 661

Query: 789 EIKRLKSSP 797
           E+ +L+   
Sbjct: 662 EMLQLQERL 670


>gi|312142862|ref|YP_003994308.1| excinuclease ABC, B subunit [Halanaerobium sp. 'sapolanicus']
 gi|311903513|gb|ADQ13954.1| excinuclease ABC, B subunit [Halanaerobium sp. 'sapolanicus']
          Length = 673

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/669 (53%), Positives = 475/669 (71%), Gaps = 14/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  +   GDQP AI  L +GI+   K Q LLG TG+GKTFTMA+++E + +P +V+A
Sbjct: 6   FKLKAPFEAKGDQPEAIKNLARGINKGYKHQTLLGATGTGKTFTMARLVEEVNKPTLVIA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAYVP+TDTYIEK++S+NE+I+++R 
Sbjct: 66  HNKTLAAQLTSEFKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIEKDASVNEEIEKLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D ++V+SVSCIYG+GS + Y  + + +K+G  +E+KE+  SL   QY R 
Sbjct: 126 SATTSLFERRDVLIVASVSCIYGLGSPDDYLDLSLHIKVGKIMERKEITRSLTFMQYSRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD I+IFP++  DVA RV +FG++IE I+    +TG+    ++ + IY
Sbjct: 186 DMDTSRGHFRVKGDVIDIFPAYR-DVAIRVELFGDEIERITRINTVTGEVQAEIDEMTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VTP   +  A+K I  EL+ RL EL  E RL+EAQRLEQR  YDLEMLE  G C 
Sbjct: 245 PASHFVTPEDKVKRAIKTISAELEERLEELRSENRLVEAQRLEQRTRYDLEMLEQMGFCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+R+L GR  G  P  L +Y P+D ++ +DESH+T+PQI GM+ GD  RK  L EY
Sbjct: 305 GIENYARHLAGREKGSRPMALLDYFPDDFMVIIDESHMTVPQIGGMFAGDRSRKEKLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+  + P  + VSATPG +E +  Q  IVEQIIRPTGLVDP V+
Sbjct: 365 GFRLPSALDNRPLNFEEFQEVVPQAVYVSATPGPYEKKHSQQ-IVEQIIRPTGLVDPEVD 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++++ +EI    +   R+L+T LTK+M+EDLTEYL E  IRVRY+HS++ T+E
Sbjct: 424 VRPTKGQIDNLLEEIRQVVKDEERVLVTTLTKKMSEDLTEYLAEAGIRVRYLHSDIDTIE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG+FDVLVGINLLREGLD+PE   VAILDADKEGFLRS+ +L+QTIGRAAR
Sbjct: 484 RSEIIRDLRLGEFDVLVGINLLREGLDLPEVSRVAILDADKEGFLRSERALVQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL-- 738
           NV  KVI+YAD IT S++ AIDET RRRE Q+E+N++H+I P+++ + + +V+ P+ +  
Sbjct: 544 NVGGKVIMYADKITDSMRKAIDETRRRREIQIEYNQEHDITPETIIKPVRDVLRPVEMVV 603

Query: 739 ----------EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                       A  +          +S+K+    +  L ++M  AA NL FE AA+IRD
Sbjct: 604 SEDKSRYYDKSKAGESEEERKENYAQMSRKEIHQLILDLEEEMEEAAGNLEFEIAAQIRD 663

Query: 789 EIKRLKSSP 797
           EI+ L++  
Sbjct: 664 EIEELEAEL 672


>gi|255038399|ref|YP_003089020.1| excinuclease ABC subunit B [Dyadobacter fermentans DSM 18053]
 gi|254951155|gb|ACT95855.1| excinuclease ABC, B subunit [Dyadobacter fermentans DSM 18053]
          Length = 672

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/671 (50%), Positives = 469/671 (69%), Gaps = 11/671 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI QL++GI + E  Q LLGVTGSGKTFT+A V+  + +P +V++
Sbjct: 3   FELTSEYQPTGDQPEAINQLIQGIENGEPAQTLLGVTGSGKTFTVANVVAKVNKPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEA++  T+TYIEK+  IN++I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPGNAVEYFISYYDYYQPEAFISSTNTYIEKDLMINQEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
               SL+  R D IVV+SVSCIYG G+   Y + IV  K+GD V + + L  LV+  Y R
Sbjct: 123 HTVSSLMSGRRDVIVVASVSCIYGAGNPLEYKKSIVSAKLGDVVPRNQFLFRLVEILYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++   RGTFRV GD++++FP +  D A+R   FG++IEEI    P TG+KI + + I I
Sbjct: 183 TEVEFNRGTFRVKGDTVDVFPGYA-DFAYRFIFFGDEIEEIQRIEPETGKKISSEKAIAI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VT R  LN ++K I+++L+M++     EGRL EA+R+++R  +D+EM+   G C
Sbjct: 242 FPANLFVTGRDVLNQSIKEIQDDLQMQIKYFIGEGRLAEAERVKERTEFDMEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY   R PG+ P  L +Y PED L+ VDESHVT+PQI  M+ GD  RK  L E
Sbjct: 302 SGIENYSRYFDRRMPGQRPFCLLDYFPEDFLMVVDESHVTMPQIRAMWGGDRSRKEALVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL F+E+  + P TI VSATP  +EL + +G++VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPSALDNRPLTFQEFEDMTPQTIFVSATPADYELRKSEGVVVEQIIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI    + G RIL+T LTKRMAE+L++YL    I+ RY+HSEVK L
Sbjct: 422 EVRPSLNQIDDLLEEITERIKLGDRILVTTLTKRMAEELSKYLDRVGIKCRYIHSEVKAL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EI+R+LRLG FDVLVG+NLLREGLD+PE  LVAI+DADKEGFLR   S+IQTIGRAA
Sbjct: 482 DRVEILRELRLGIFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRDTRSMIQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   KVI+YADTIT S+QLAIDET RRR  Q+++N  + I P++V++    +++   + 
Sbjct: 542 RNDRGKVIMYADTITGSMQLAIDETNRRRSIQMDYNLANGITPKTVRKSKEAIMEQTSVA 601

Query: 740 DA---------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           D+             I+ D     + K   +  +   +++M  AA +L+F EAAR+RDE+
Sbjct: 602 DSKVRKVYVEPEEVRIAADPVVQYMGKTDLQKLIAETQRKMESAAKDLDFLEAARLRDEL 661

Query: 791 KRLKSSPYFQG 801
            +LK+    QG
Sbjct: 662 LQLKARVQEQG 672


>gi|330836908|ref|YP_004411549.1| Excinuclease ABC subunit B [Spirochaeta coccoides DSM 17374]
 gi|329748811|gb|AEC02167.1| Excinuclease ABC subunit B [Spirochaeta coccoides DSM 17374]
          Length = 711

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/670 (49%), Positives = 448/670 (66%), Gaps = 5/670 (0%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
            N   ++  F +   +  SGDQ  AI  L +G+ + E    L GVTGSGKT+TMAK+IE 
Sbjct: 29  GNVRGEVIPFSVVAPFGTSGDQQQAIDALSEGLIAGEDRLTLKGVTGSGKTYTMAKIIEK 88

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +QRP ++++ NK LAAQLY EFK+FFP+NAVEYFVS YDYYQPEAYVP  D YIEK++ I
Sbjct: 89  VQRPTLILSHNKTLAAQLYREFKSFFPNNAVEYFVSTYDYYQPEAYVPGKDLYIEKDADI 148

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           N++IDR+R SA+ SL+ER D IVVS+VSCIYG+ +  S   M     +G   +    L  
Sbjct: 149 NDEIDRLRLSASFSLMERRDVIVVSTVSCIYGLANPVSLRDMTKTYAVGMQFDHTRELEQ 208

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV+ QY+R D  + RG FRV GD IEI PS++E+ A R+S+  ++I  I  F P++G+K 
Sbjct: 209 LVRMQYERNDAILKRGNFRVRGDVIEICPSYMEN-AVRISLEWDEISSIQWFDPVSGEKQ 267

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
            +V T  +Y    +V P+  +  A+  IK+E++ +       G+ LEA+R++ R+ YD+E
Sbjct: 268 ESVPTFTLYPAKQFVMPKEQVVKAIGRIKDEMEAQYEHFITSGKPLEAERIKTRVEYDME 327

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           ML+  G C  IENYSR L+ R  GE P  L +Y P + L F+DESHVT+PQ+  MY GD 
Sbjct: 328 MLQEIGYCSGIENYSRPLSNRKEGERPAVLLDYFPPNFLTFIDESHVTLPQVGAMYEGDR 387

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK  L EYGFRLPS +DNRPL+F+E+  +    + VSATPG  EL +    +VEQ+IRP
Sbjct: 388 SRKMNLVEYGFRLPSALDNRPLKFDEFTHVVGQRVFVSATPGKLELAES-SRVVEQVIRP 446

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP + +R    Q+E++Y EI     +  R+L+T LTK+M+EDLT+YL    ++VRY
Sbjct: 447 TGLLDPEISVRPTEGQMENLYGEIRSCIAKKQRVLVTTLTKKMSEDLTDYLTNLGLKVRY 506

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HSE++T+ER+EI+RDLRLG FDVLVGINLLREGLD+PE  LVAILDADK GFLRS+TSL
Sbjct: 507 LHSEIETIERVEILRDLRLGVFDVLVGINLLREGLDLPEVALVAILDADKIGFLRSETSL 566

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARN   +VI+YAD ++ ++  AI ET RRR  Q+E+NK H I P ++ + I +
Sbjct: 567 IQTIGRAARNAEGRVIMYADRMSDAMSTAIKETNRRRALQMEYNKAHGITPTTIVKAIQD 626

Query: 732 VI---DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +I       LE          ++   L  K+ K ++K L ++M   A NL FE AA +RD
Sbjct: 627 IIIREKTETLEIQKEDIAIRKSRFNLLEAKERKKYIKELEQEMLECAKNLEFERAAMLRD 686

Query: 789 EIKRLKSSPY 798
           EI  ++   +
Sbjct: 687 EITAIREGRF 696


>gi|328955215|ref|YP_004372548.1| Excinuclease ABC subunit B [Coriobacterium glomerans PW2]
 gi|328455539|gb|AEB06733.1| Excinuclease ABC subunit B [Coriobacterium glomerans PW2]
          Length = 745

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/692 (50%), Positives = 467/692 (67%), Gaps = 33/692 (4%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           + +   F++ + + PSGDQP AIA L++GI   ++ Q+LLGVTGSGKT+TMAK IEA+ +
Sbjct: 19  TGESARFEVVSPFEPSGDQPEAIASLVEGIRDNDRYQVLLGVTGSGKTYTMAKTIEALGK 78

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           PA+VM PNK LAAQ+ SE + FFP+NAV YFVSYYDYYQPEAYVP +DTYIEK+SSINE+
Sbjct: 79  PALVMEPNKTLAAQVASELREFFPNNAVVYFVSYYDYYQPEAYVPSSDTYIEKDSSINEE 138

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++ +RH AT SLL R D IVV+SVSCIYGIGS E Y+ +   +     +E+ + + +L+ 
Sbjct: 139 VEMLRHQATASLLSRRDVIVVASVSCIYGIGSPEDYAGLAPNVDKTQPLERDDFIHALID 198

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D  + RGTFRV GD +++FP + E    R   FG+++E I+E   +TG+  R  
Sbjct: 199 IQYDRNDFDLARGTFRVRGDVVDVFPPYAE-HPLRFEFFGDEVELIAEIDEVTGEITREY 257

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           + I ++  SHYVT +P +  A+K I+ EL  R+ EL+ E +LLEAQRL+QR  YDLEMLE
Sbjct: 258 DAIPVWPASHYVTEKPKVAAALKTIEAELSERVGELKAEDKLLEAQRLQQRTDYDLEMLE 317

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
           T G C  IENYSR+L GR PGEPP TL +Y P+D    +DESHVT+PQI GM+ GD  RK
Sbjct: 318 TMGFCNGIENYSRHLDGRKPGEPPYTLIDYFPKDMFCIIDESHVTVPQIRGMHEGDRSRK 377

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL E+GFRLPS +DNRPLRF+E+    P  + VSATPG +EL   Q   VEQIIRPTGL
Sbjct: 378 VTLIEHGFRLPSALDNRPLRFDEFEARIPQFVYVSATPGDYELRVSQNN-VEQIIRPTGL 436

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP + +R  R Q++D+ DEI   A++  R+L+T LTKRMAEDLT++  +  ++V YMHS
Sbjct: 437 LDPKISVRPVRGQIDDLLDEIKERAERHERVLVTTLTKRMAEDLTDHFLDAGVKVNYMHS 496

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +  TL+R+EI+RDLR G  DVLVGINLLREGLD+PE  LVAILDADKEGFLR++ SLIQT
Sbjct: 497 DTATLDRVEILRDLRRGSIDVLVGINLLREGLDLPEVSLVAILDADKEGFLRNRRSLIQT 556

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI- 733
           IGRAARN   +VI+YAD IT S++ AI ET RRR+ Q  +N+ H I P++V++ I ++  
Sbjct: 557 IGRAARNAGGEVIMYADRITDSMREAIQETARRRDLQERYNEVHGIRPETVRKAINDISS 616

Query: 734 ------------------------------DPILLEDAATTNISIDAQQLSLSKKKGKAH 763
                                         +    +   T    +  +   L        
Sbjct: 617 FISEAAQSVGRRDRSRGDSLGHGEFFTPTGEGSDEQLDETAGRRLAEELAELPHDDLVRI 676

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           + ++ + M  A++ ++FEEAAR+RD I  L++
Sbjct: 677 IATMEEDMKTASEGMDFEEAARLRDGIVHLRA 708


>gi|315609009|ref|ZP_07883981.1| excision endonuclease subunit UvrB [Prevotella buccae ATCC 33574]
 gi|315249389|gb|EFU29406.1| excision endonuclease subunit UvrB [Prevotella buccae ATCC 33574]
          Length = 680

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/676 (48%), Positives = 461/676 (68%), Gaps = 20/676 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL  GI      Q+LLGVTGSGKTFT+A VI+ +++P ++++
Sbjct: 3   FELTSKYKPTGDQPEAIRQLTDGIKDGMPAQVLLGVTGSGKTFTVANVIQNVEKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN+ ID++R 
Sbjct: 63  HNKTLAAQLYQEMKGFFPRNAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDDIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  +LL  R D IVVSSVSCIYG+G   +  Q +++LK G+++++ E L  LV   Y R
Sbjct: 123 SAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQQSVIKLKKGETLDRNEFLRRLVDALYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD++++F ++ ++V  RV+ + ++I+ I E    T  ++ + E+ ++
Sbjct: 183 NDIDLQRGCFRVKGDTVDVFMAYSDNV-LRVTWWDDEIDAIEEVDAETFHRVESFESYEL 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  ++    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTEQAIRMIQDDLVKQVDYFNEIGDTIKAQRIKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  GE P  L ++ P+D LL VDESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRQAGERPYCLLDFFPKDFLLVVDESHVSVPQISAMYGGDRARKQNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPL+F+E+  L   TI VSATP  +EL + +G++VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLKFDEFLSLLHQTIYVSATPADFELREAEGVVVEQIIRPTGLLDPQI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ DEI   + +  R+L+T LTKRMAE+LTEYL   N+R  Y+HS+V TL
Sbjct: 422 DVRPSENQIDDLLDEILTRSHRNERVLVTTLTKRMAEELTEYLLNNNVRANYIHSDVATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIMNDLRAGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI+YADTIT+S+Q  IDET RRR  QL++N++H I PQ + + I   +     E
Sbjct: 542 RNVNGKVIMYADTITESMQRTIDETARRRSIQLKYNEEHGITPQQIVKAIRSALPTKGDE 601

Query: 740 DA------------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
           D                    +   + D   + +++++ +  + +    M  AA +L+F 
Sbjct: 602 DGTAAARSGHYPNLQAYLEPDSAAFAADPIVMQMTREQLEKSIANTTALMKQAAKDLDFI 661

Query: 782 EAARIRDEIKRLKSSP 797
           +AA+ RDEI RL+   
Sbjct: 662 QAAQYRDEIIRLQKQL 677


>gi|308234505|ref|ZP_07665242.1| excinuclease ABC, B subunit [Atopobium vaginae DSM 15829]
          Length = 742

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/705 (50%), Positives = 472/705 (66%), Gaps = 36/705 (5%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           HSK    FQ+  D+ P GDQP AI  L KG+   + + Q LLGVTGSGKTFTMA +IE  
Sbjct: 16  HSKQQQPFQVVADFAPKGDQPRAINALTKGVMQDKLRYQTLLGVTGSGKTFTMANLIEQT 75

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           Q+  +++ PNK LAAQ+ SE K  FPHNAV YFVSYYDYYQPEAY+P+TDTYIEK+SSIN
Sbjct: 76  QKTTLIIEPNKTLAAQVASEMKTLFPHNAVVYFVSYYDYYQPEAYIPQTDTYIEKDSSIN 135

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           E+++++RH  T SLL R D IVV+SVSCIYGIGS + Y+ +   +     +E+ + + SL
Sbjct: 136 EEVEKLRHQTTSSLLSRRDVIVVASVSCIYGIGSPQDYAGLAPTIDKNTPLERDDFIRSL 195

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           +  QY R D+ +IRGTFRV GD +++F  + E    RVS FG++IE I+EF  +TG  + 
Sbjct: 196 IDIQYDRNDVDLIRGTFRVRGDCVDVFTPYGE-HPIRVSFFGDEIEMIAEFDEVTGDTLS 254

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
             + + I+  +HYV+ RP +N A+  I++EL+ R+ EL+    LLEAQRL+QR +YDLEM
Sbjct: 255 QYDALPIWPATHYVSARPKINHAILTIRDELEARVQELKAHNMLLEAQRLQQRCSYDLEM 314

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           LET G C  IENYSR+L GR PGE P TL +Y PED L  +DESHV++PQI GMY GD  
Sbjct: 315 LETMGFCSGIENYSRHLDGRKPGEAPYTLIDYFPEDMLCIIDESHVSVPQIRGMYEGDRS 374

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL ++GFRLP  +DNRPLR++E+    P  + VSATPG +EL   Q  +VEQ+IRPT
Sbjct: 375 RKITLVDHGFRLPCALDNRPLRYDEFEQRIPQFVFVSATPGDYELSVSQN-VVEQVIRPT 433

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP VEIR  R Q++D+ DEI     +  R+L+T LTK MAEDLTE+L +   +V YM
Sbjct: 434 GLLDPRVEIRPTRGQIDDLADEIRTRVTKHERVLVTTLTKHMAEDLTEHLLDEGFKVNYM 493

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+  TL+RI+IIR LR G  DVLVGINLLREGLDIPE  LVAILDADKEGFLR+K SLI
Sbjct: 494 HSDTATLDRIDIIRALRTGTLDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNKRSLI 553

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QT+GRAARN    VI+YAD +T S+Q+A+DET RRR  Q+ +N +H+I PQ++K+ +++V
Sbjct: 554 QTMGRAARNAAGSVIMYADRMTDSMQIAVDETKRRRTLQMRYNAQHHIVPQTIKKSMVDV 613

Query: 733 ----------IDPILLED-----------------------AATTNISIDAQQLSLSKKK 759
                     +D    +D                          +   + +    + K+ 
Sbjct: 614 TSFIQAAHETLDSKQRKDGVFYTASGTLSDNNETHQPSKSSGENSATQLCSSLEGMPKED 673

Query: 760 GKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
               L +L+ +M  A+ +++FE AA++RD+I  ++S       DD
Sbjct: 674 VAKILGALQDEMLAASASMDFERAAKLRDQIVEVQSVLEGLSADD 718


>gi|329964885|ref|ZP_08301893.1| excinuclease ABC, B subunit [Bacteroides fluxus YIT 12057]
 gi|328524526|gb|EGF51594.1| excinuclease ABC, B subunit [Bacteroides fluxus YIT 12057]
          Length = 685

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/679 (48%), Positives = 465/679 (68%), Gaps = 22/679 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P +
Sbjct: 1   MNKFELTSAYKPTGDQPEAIAQLTEGVREGLPAQTLLGVTGSGKTFTIANVIANINKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID+
Sbjct: 61  ILSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDK 120

Query: 258 MRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +R +AT SLL  R D +VVSSVSCIYG+G+   +   +++++ G +  +   L  LV   
Sbjct: 121 LRLAATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEVQQGKNFSRNVFLRRLVDSL 180

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R DI + RG FRV GD+++I+ ++ +++  R+  +G++I+ I E  P++G  I   ++
Sbjct: 181 YVRNDIDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEIDSIEEVDPVSGVTIAKFDS 239

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
            KIY  + ++T +     A+  I+++L  ++   E EGR LEA+RL++R+TYD+EM+   
Sbjct: 240 YKIYPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPLEAKRLQERVTYDMEMIREL 299

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  
Sbjct: 300 GHCSGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKVN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+D
Sbjct: 360 LVEYGFRLPAAMDNRPLKFEEFEEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLD 419

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LTEYL   N++  Y+HS+V
Sbjct: 420 PIIEVRPSHNQIDDLMEEIQVRIEKNERTLVTTLTKRMAEELTEYLLNNNVKCNYIHSDV 479

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER++I+ DLR G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT G
Sbjct: 480 DTLERVKIMSDLREGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 539

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK-------- 728
           RAARNVN  VI+YAD IT+S+QL IDET RRREKQL++N++H I PQ +K+         
Sbjct: 540 RAARNVNGMVIMYADRITESMQLTIDETNRRREKQLKYNEEHGITPQQIKKAKNLNVFAT 599

Query: 729 ------------IMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
                          +     +E    ++++ D     +S+ + +  ++  RK M  AA 
Sbjct: 600 GDASADAMGSKDKASIAPRPYIEQETASSVAADPIVQYMSRAQLEKSIERTRKLMQEAAK 659

Query: 777 NLNFEEAARIRDEIKRLKS 795
            L+F EAA+ RDE+ +++ 
Sbjct: 660 KLDFIEAAQYRDEVLKMEE 678


>gi|270297065|ref|ZP_06203264.1| excinuclease ABC, B subunit [Bacteroides sp. D20]
 gi|270273052|gb|EFA18915.1| excinuclease ABC, B subunit [Bacteroides sp. D20]
          Length = 686

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/680 (48%), Positives = 465/680 (68%), Gaps = 23/680 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P+GDQP AIAQL +G+H     Q LLGVTGSGKTFT+A VI  + +P +
Sbjct: 1   MNKFELTSAYQPTGDQPEAIAQLTEGVHEGLPAQTLLGVTGSGKTFTIANVIANINKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID+
Sbjct: 61  ILSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDK 120

Query: 258 MRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +R +AT +LL  R D +VVSSVSCIYG+G+   +   +++++ G +  +   L  LV   
Sbjct: 121 LRLAATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQGKNFSRNVFLRRLVDSL 180

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R DI + RG FRV GD+++I+ ++ +++  RV+ +G++++ I E  P++G  +   + 
Sbjct: 181 YVRNDIDLNRGNFRVKGDTVDIYLAYADNL-LRVTFWGDEVDSIEEVDPMSGVTVAKFDA 239

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
            KIY  + ++T +     A+  I+++L  ++   E EGR  EA+RL++R+TYD+EM+   
Sbjct: 240 YKIYPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAKRLQERVTYDMEMIREL 299

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRY  GR  G  P  L ++ PED L+ +DESHV++PQI  MY GD  RK  
Sbjct: 300 GHCSGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKIN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLP+ MDNRPL+F+E+  +    I VSATP  +EL + +GI+VEQ+IRPTGL+D
Sbjct: 360 LVEYGFRLPAAMDNRPLKFDEFEEMAKQVIYVSATPADYELMKSEGIVVEQVIRPTGLLD 419

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LTEYL   N++  Y+HS+V
Sbjct: 420 PIIEVRPSHNQIDDLMEEIQVRIEKNERTLVTTLTKRMAEELTEYLLNNNVKCNYIHSDV 479

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT G
Sbjct: 480 DTLERVKIMGDLREGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 539

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE--------- 727
           RAARNVN  VI+YAD IT S+QL IDET RRREKQL++N++H I PQ +K+         
Sbjct: 540 RAARNVNGMVIMYADKITDSMQLTIDETNRRREKQLKYNEEHGITPQQIKKAKNLNVFAT 599

Query: 728 ------------KIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAA 775
                       K         +E  +T+ ++ D     +S+K+ +  ++  +K M  AA
Sbjct: 600 NEASGEAVLSSEKFTSSTPRPYVEQESTSTMAADPIVQYMSRKQLEKSIERTKKLMQEAA 659

Query: 776 DNLNFEEAARIRDEIKRLKS 795
             L+F EAA+ RDE+ +++ 
Sbjct: 660 KKLDFIEAAQYRDEVLKMEE 679


>gi|167755025|ref|ZP_02427152.1| hypothetical protein CLORAM_00529 [Clostridium ramosum DSM 1402]
 gi|237735250|ref|ZP_04565731.1| excinuclease ABC subunit B [Mollicutes bacterium D7]
 gi|167705075|gb|EDS19654.1| hypothetical protein CLORAM_00529 [Clostridium ramosum DSM 1402]
 gi|229380995|gb|EEO31086.1| excinuclease ABC subunit B [Coprobacillus sp. D7]
          Length = 657

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/659 (51%), Positives = 447/659 (67%), Gaps = 3/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + P GDQ  AI QL+ GI   +K Q+LLG TG+GKTFT++ VI A+ +P +
Sbjct: 1   MQKFKLVSPFSPMGDQEEAIKQLVAGIKEGKKEQVLLGGTGTGKTFTVSNVIAAVNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LA QLYSE K FFP N VEYF+S +D+YQPEAY+P  D YI+K +  N +I+ 
Sbjct: 61  VLAHNKTLAGQLYSELKEFFPENRVEYFISNFDFYQPEAYIPGRDLYIDKNAKTNYEIEM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R +A  SL+ER D IVV+SV+ IYG+G+ E Y +MI  L++   +++KELL+ LV +QY
Sbjct: 121 LRSAAMNSLIEREDVIVVASVASIYGLGNPEQYKEMIFSLRVDQDIDRKELLTYLVDRQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   +GTFRV GD IEI P H E    R+ +FG+ +E ISE  PLTG  +    T 
Sbjct: 181 QRNDIEQTKGTFRVRGDVIEIVPGHTESWLIRIELFGDTVERISEVDPLTGHVLGVYNTY 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY    YVT +  +  A   I  EL+ RL   + E +LLE +RLEQR  +D+EML   G
Sbjct: 241 TIYPAYGYVTKKEQILKACDTITAELENRLETFKAETKLLEHERLEQRTRHDVEMLREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR++ GR+ G+ P TL +Y P+D L+ VDESHV +PQ+ GMY GD  RK TL
Sbjct: 301 MCPGIENYSRHIDGRDEGQRPYTLIDYFPKDFLMIVDESHVMLPQVRGMYNGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPLRFEE+  +    I VSATPG +ELE  +  +VEQIIRPTGL+DP
Sbjct: 361 VEYGFRLPSALDNRPLRFEEFEKIINQVIYVSATPGDYELEHVENKVVEQIIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R  + Q++D+  EI +   +  R+L+T LTKRMAEDL+ YL E  I+V Y+HS+ K
Sbjct: 421 VIEVRPTKDQIDDIISEIKIRQDRNERVLITTLTKRMAEDLSAYLKELGIKVAYLHSDTK 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EI+RDLRLGK+DVLVGINLLREGLD+PE  LV ILDADKEGFLRS  SLIQTIGR
Sbjct: 481 TLERTEILRDLRLGKYDVLVGINLLREGLDLPEVSLVCILDADKEGFLRSNRSLIQTIGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N +VI+Y D IT S+  AI+ET RRR+ Q  +NK+HNI P ++ ++I + I    
Sbjct: 541 AARNSNGEVIMYGDKITDSMAYAIEETNRRRKIQDAYNKEHNITPTTIHKEIRDAIRGQE 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + D A + +    +         +  ++ L KQM  AA  L+FE A  +RD I  L+  
Sbjct: 601 VIDDAASLVKKGKKASKK---DKQVMIQELEKQMKDAAKVLDFERAMELRDIIMELQGE 656


>gi|297243676|ref|ZP_06927607.1| helicase subunit of the DNA excision repair complex [Gardnerella
           vaginalis AMD]
 gi|296888427|gb|EFH27168.1| helicase subunit of the DNA excision repair complex [Gardnerella
           vaginalis AMD]
          Length = 704

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/704 (49%), Positives = 478/704 (67%), Gaps = 34/704 (4%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
           N   +    F ++  Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE 
Sbjct: 3   NKIQRTNKPFVVKAPYAPSGDQPQAIEELANRIENGENDVVLMGATGTGKTATTAWLIER 62

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+I
Sbjct: 63  LQRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNI 122

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           N+ ++R+RH+AT +LL R DC+VV++VSCIYG+G+ E Y++ ++ L +G+ +E+ +LL  
Sbjct: 123 NDDVERLRHAATANLLTRRDCVVVATVSCIYGLGTPEEYAERMLMLSVGEQLERDDLLRQ 182

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
            V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ I+  +PLTG+ I
Sbjct: 183 FVSMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRITMLHPLTGEVI 241

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
           R   ++ I+  SHY+     +  A++ I++E   R+ +L+K+ +LLEAQRLE R TYDLE
Sbjct: 242 RQESSVHIFPASHYIAGPERMERALEAIEKERDERVAQLKKQNKLLEAQRLEMRTTYDLE 301

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           ML   G C  +ENYSR+  GR+ G PP TL ++ P+D LL +DESHVT+PQI  MY GD 
Sbjct: 302 MLRQVGVCPGVENYSRHFDGRDAGTPPHTLLDFFPDDFLLVLDESHVTVPQIGAMYEGDA 361

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK TL E+GFRLPS MDNRPL+++E+      T+ +SATPG +EL    G +VEQIIRP
Sbjct: 362 SRKRTLVEHGFRLPSAMDNRPLKWKEFLEHVGQTVYLSATPGDYELGLSDG-VVEQIIRP 420

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DP +E+R    QV+D+  EI     +  R+L+T LTK+MAEDLT+Y  E  I+V Y
Sbjct: 421 TGLLDPKIEVRPVEGQVDDLLAEIKERVAKDERVLVTTLTKKMAEDLTDYFLELGIKVEY 480

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS+V TL R+E++R+LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SL
Sbjct: 481 LHSDVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSL 540

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQTIGRAARNV+  V++YADT+T ++  AI ET RRREKQ+ +NK H I+P+ +++KI +
Sbjct: 541 IQTIGRAARNVSGTVLMYADTVTDAMSKAISETERRREKQIAYNKAHGIDPKPLRKKISD 600

Query: 732 VIDPILLEDAATTNISID------------------------------AQQLSLSKKKGK 761
           V D +  ED  T  +                                 A    L +    
Sbjct: 601 VNDMLAKEDVDTQTLLAGGYRNANKAGNSHYGVPKEPNLGQQSKEKRMANISELPQDDIM 660

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           + +K+L +QMH+AA+ L FE AAR+RDEI+ LK     + +D +
Sbjct: 661 SLIKNLSEQMHVAAEQLQFELAARLRDEIRDLKKE--LRQMDAA 702


>gi|198274586|ref|ZP_03207118.1| hypothetical protein BACPLE_00738 [Bacteroides plebeius DSM 17135]
 gi|198272033|gb|EDY96302.1| hypothetical protein BACPLE_00738 [Bacteroides plebeius DSM 17135]
          Length = 680

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/666 (50%), Positives = 453/666 (68%), Gaps = 19/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AIAQL +GI      Q LLGVTGSGKTFT+A VI+ + +P ++++
Sbjct: 3   FELISDYQPTGDQPEAIAQLTEGIRQHVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFKNFFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYGEFKNFFPHNAVEYYVSYYDYYQPEAYIPSTDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT SLL  R D IVVSSVSCIYG+G+   +   ++++K G  +++   L  LV   Y R
Sbjct: 123 AATSSLLSGRKDVIVVSSVSCIYGMGNPADFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++IF ++ + V  RV  + ++I+ I E  P++G +I   E  KI
Sbjct: 183 NDIELNRGNFRVKGDTVDIFLAYTDSV-LRVMFWDDEIDGIEEIDPVSGHRIGTFEEYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T + +   A+  I+++L  ++   E+ G+  EA+RL +R+TYD+EML   G C
Sbjct: 242 YPANLFMTTKESTLRAIHQIEDDLTKQVAYFEEIGKPYEAKRLYERVTYDMEMLRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PG  P  L ++ PED L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGREPGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL FEE+  +    I VSATP  +EL+Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLTFEEFQQMAKQVIYVSATPAEYELQQSEGIVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ +EI    ++  R+L+T LTKRMAE+LTEYL    IR  Y+HS+V+TL
Sbjct: 422 DVRPSLNQIDDLMEEIQQRIEREERVLVTTLTKRMAEELTEYLLNNGIRCAYIHSDVETL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERI+I+ +LR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERIKIMDELREGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--- 736
           RNVN KVI+YAD IT S++  IDET RRREKQL +N+ H I P+ +       +  I   
Sbjct: 542 RNVNGKVIMYADRITDSMRQTIDETNRRREKQLAYNEAHGITPKQITRSRTNALLDIEKQ 601

Query: 737 --------------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                           E  A  + + D     ++K + +  ++  RK M  AA  L+F E
Sbjct: 602 SSQENSSKPKEPRAYTETEAQLHAAADPVVQYMTKGQLQKSIEQTRKLMQEAAKKLDFIE 661

Query: 783 AARIRD 788
           AA+ RD
Sbjct: 662 AAQYRD 667


>gi|91774217|ref|YP_566909.1| excinuclease ABC subunit B [Methanococcoides burtonii DSM 6242]
 gi|121691546|sp|Q12TR7|UVRB_METBU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|91713232|gb|ABE53159.1| Excinuclease ABC, B subunit [Methanococcoides burtonii DSM 6242]
          Length = 660

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/665 (53%), Positives = 467/665 (70%), Gaps = 8/665 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ +DY P GDQP AI +L +G++   K Q+LLGVTGSGKTFT+A VI+ +Q+P +
Sbjct: 1   MSGFELVSDYEPKGDQPEAIRKLSEGLNKGLKHQVLLGVTGSGKTFTVANVIQNVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL+SEF+ FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+SS+NE+IDR
Sbjct: 61  VIAHNKTLAAQLFSEFREFFPNNAVEYFVSYYDYYQPEAYLPTTDTYIEKDSSVNEEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT+SL+ER D IVVSSVS IY IGS + + +M V L+ GD V + +L ++L+   Y
Sbjct: 121 LRLSATKSLIERKDVIVVSSVSSIYNIGSPDEWRRMSVILRTGDEVGRSDLFAALINIHY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   +G+FR  GD+IE+FP+  ++   R+ +FG++I+ IS F P+TG+ I  V+  
Sbjct: 181 ERNDIESAKGSFRSKGDTIEVFPA-QDNHGVRIELFGDEIDRISSFDPVTGKTIDEVKED 239

Query: 378 K---IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               IY   H+V P+  +  A+  I++EL+ ++ +L  E R+LE+QRL QR  +DLEM+ 
Sbjct: 240 NSIVIYPAKHFVMPQEEMVKALGSIEKELEGQVAKLVSENRILESQRLTQRAKFDLEMIR 299

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSR+  GR PG+PP +L E+ P+D LL +DESHVTIPQI GM+ GD  RK
Sbjct: 300 ELGYCSGIENYSRHFDGRKPGDPPSSLLEFFPDDFLLVIDESHVTIPQIRGMHNGDRARK 359

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L  YGFRLPS  DNRPL + E++      I VSATP  +EL      +VEQIIRPTGL
Sbjct: 360 EALINYGFRLPSAYDNRPLTYNEFHHKINQAIYVSATPADYELGISSA-VVEQIIRPTGL 418

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           VDP V IR    Q++D+  E+N   ++G R L+T LTKRMAEDLTEYL E  IRVRYMHS
Sbjct: 419 VDPVVFIRPVENQIDDLIGEVNKVTEKGYRTLVTTLTKRMAEDLTEYLLEMGIRVRYMHS 478

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ TLER EIIRDLR G FDVLVGINLLREGLDIPE   VAILDADKEGFLRS+ SLIQT
Sbjct: 479 DIDTLERAEIIRDLRKGVFDVLVGINLLREGLDIPEVAFVAILDADKEGFLRSERSLIQT 538

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRA+RN +  VILYA  +T SI+ A+ ET RRR+ QL +N+KH I PQ++ + +   + 
Sbjct: 539 MGRASRNADGYVILYAGKVTGSIEAALRETNRRRQIQLAYNEKHGIVPQTIHKALQRELV 598

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                +  +  + +      LS  +    +  L  +MHLAA NL FE AA +RD IK L+
Sbjct: 599 ETEYGEVVSEVLGVAED---LSDIEIADMVIELEAEMHLAAKNLEFERAAALRDNIKELR 655

Query: 795 SSPYF 799
           S+   
Sbjct: 656 STYSL 660


>gi|283782003|ref|YP_003372758.1| excinuclease ABC, B subunit [Pirellula staleyi DSM 6068]
 gi|283440456|gb|ADB18898.1| excinuclease ABC, B subunit [Pirellula staleyi DSM 6068]
          Length = 691

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/657 (52%), Positives = 476/657 (72%), Gaps = 4/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ+++ + P+GDQP AI +L++GI + ++ Q+LLGVTGSGKTFTMA VI+ +Q+P +V+
Sbjct: 2   PFQLESQFQPAGDQPQAIEKLVQGIRANKRSQVLLGVTGSGKTFTMANVIQQVQKPTLVI 61

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK LAAQLYSEFK FFP NAV YFVSYYDYYQPEAY+P+ D YIEK++SIN++IDR+R
Sbjct: 62  SHNKTLAAQLYSEFKEFFPRNAVHYFVSYYDYYQPEAYIPQRDIYIEKDASINQEIDRLR 121

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            ++T SL+ R D I+++SVSCIYG+GS + Y  M+V L++G ++++ E+LS LV  QY R
Sbjct: 122 LASTSSLVSRQDVIIIASVSCIYGLGSPKDYKAMMVPLRVGQAIDRDEVLSRLVDIQYDR 181

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RG FRV GD +EI+PS+ E+ A+R+ ++G+DIE++S   P++G+ +   + + I
Sbjct: 182 NDIAFERGKFRVRGDCVEIWPSY-EEYAFRIELWGDDIEKLSFINPISGETLATQDQLFI 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y   H+V P   +  A++ IK+EL  RL EL + G+LLEAQRL  R  +D+EML+  G C
Sbjct: 241 YPAKHFVLPEERIAGAIETIKQELDERLNELREHGKLLEAQRLSARTRFDIEMLQEVGHC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR L GR PG  P TL+++ PED LL +DESHVTIPQ+  MY GD  RK TL E
Sbjct: 301 PGIENYSRPLAGRPPGSTPDTLYDFFPEDYLLIIDESHVTIPQVRAMYNGDRARKITLVE 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRP++FEEW       + VSATP  +EL Q QG +VEQIIRPTGL+DP +
Sbjct: 361 HGFRLPSALDNRPMKFEEWEQKIKQVVYVSATPNDYELLQSQGEVVEQIIRPTGLLDPVI 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+ SAR QV+ + ++I   A  G R+L+T LTKR+AEDL+ YL ++ +  +++HSE+   
Sbjct: 421 EVVSARGQVQHLLEQIRERAAVGERVLVTALTKRLAEDLSAYLVQQKVACKWLHSELDAF 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+E++RDLR GKF+ L+G+NLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIGRAA
Sbjct: 481 ERVELLRDLRQGKFEALIGVNLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN+KVILYAD IT+S++LA++ET+RRR  Q  +N +H I P++VK+ I   I+  +  
Sbjct: 541 RNVNAKVILYADKITESMRLAMEETSRRRAIQEAYNLEHGITPETVKKHIRAGIESAMAA 600

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                       +  +  ++  + L++       AA+ L FE A  +RD I +L+ +
Sbjct: 601 HRDANAAVGRVDEEEVITEELLSELEAEM---LEAAEKLEFERAGALRDRITQLRDA 654


>gi|317502714|ref|ZP_07960825.1| excision endonuclease subunit UvrB [Prevotella salivae DSM 15606]
 gi|315666158|gb|EFV05714.1| excision endonuclease subunit UvrB [Prevotella salivae DSM 15606]
          Length = 683

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/678 (48%), Positives = 462/678 (68%), Gaps = 23/678 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L +GI      Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FKLTSKYKPTGDQPEAIKELTEGIKDGIPAQVLLGVTGSGKTFTVANVIANVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPNNAVEYYVSYYDYYQPEAYLPTSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            A  +LL  R D IVVSSVSCIYG+G   +  + I+++K G ++++   L  LV   Y R
Sbjct: 123 GAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQESIIKIKRGQTIDRNVFLRKLVDALYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RGTFRV GD+I+I  ++ +++  RV+ + ++I+ I E   +T   I   ET +I
Sbjct: 183 NDIDLQRGTFRVKGDTIDISMAYSDNI-LRVTWWDDEIDSIEEVDNITFHTIERFETYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  R+    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTEHAIRMIQDDLVDRVNYFNEIGDSIKAQRIKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GRNPGE P  L ++ P+D L+ +DESHV++PQI+ MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRNPGERPYCLLDFFPKDYLMVIDESHVSVPQINAMYGGDRARKQNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPL+FEE++ L    I +SATP ++E+E+ +G++VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLKFEEFHNLMHQVIYISATPANYEIEEAEGVVVEQIIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ DEI     +  R+L+T LTKRMAE+LTEYL    I+  Y+HS+V TL
Sbjct: 422 EVRPSENQIDDLMDEILTRINRHERVLVTTLTKRMAEELTEYLLNHEIKANYIHSDVATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIMNDLRAGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RNVN KVI+YADTIT+S+Q  I+ET RRR  QL++N++H I P+ +++KI   +      
Sbjct: 542 RNVNGKVIMYADTITESMQKTIEETARRRSIQLKYNEEHYIIPKQIEKKIGSTLAFSSQT 601

Query: 734 --------------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
                           I LE  A    + D     +SK + +  + +    M  AA +L+
Sbjct: 602 NNNGKEDIRQNSKYKDIYLEPEAGAF-AADPIVKRMSKAELEKSIANTTALMKQAAKDLD 660

Query: 780 FEEAARIRDEIKRLKSSP 797
           F +AA+ RDEI RL++  
Sbjct: 661 FIQAAQYRDEIIRLQNQL 678


>gi|333030109|ref|ZP_08458170.1| UvrABC system protein B [Bacteroides coprosuis DSM 18011]
 gi|332740706|gb|EGJ71188.1| UvrABC system protein B [Bacteroides coprosuis DSM 18011]
          Length = 670

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/663 (49%), Positives = 459/663 (69%), Gaps = 9/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI +L +G+ S    Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELTSDYKPTGDQPEAIKELTEGVLSDVPGQTLLGVTGSGKTFTVANVIANVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT SLL  R D +VVSSVSCIYG+G+   +   ++ ++ G  V +   L  LV   Y R
Sbjct: 123 AATSSLLSGRKDVVVVSSVSCIYGMGNPADFYNNVIDIEQGKVVNRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++  D   RV  + ++++ I E  P++G  I + E+ KI
Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAYT-DHILRVVFWDDEVDSIEEVDPISGATIADYESYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T + +  +A+  I+E+L  ++   E+ G+  EA+RL +R+TYD+EML   G C
Sbjct: 242 YPANLFMTTKESTLSAIHQIEEDLTKQVTYFEEIGKPYEAKRLYERVTYDMEMLRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PG  P  L ++ PED L+ +DESHV+IPQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGREPGTRPYCLLDFFPEDFLIVIDESHVSIPQIRAMYGGDKARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL +  G+IVEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEEMAKQVIYVSATPADYELMKSDGVIVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+LTEYL    ++  Y+HS+V TL
Sbjct: 422 DVRPSMNQIDDLMEEIQLRVERQERVLVTTLTKRMAEELTEYLLNHGVKCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++  VI+YAD +T S+Q  IDET RRREKQL +N+ HNI PQ +K+     +     +
Sbjct: 542 RNIHGMVIMYADKMTDSMQKTIDETNRRREKQLAYNEAHNITPQQIKKARNLAVFGEYHD 601

Query: 740 DAATT-------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           ++          NI+ D     +S+ +    ++  RK M  AA +L+F +AA+ RDE+ +
Sbjct: 602 ESGKAYIEPEMPNIAADPVVQYMSRDELAKSIERTRKLMKKAAKDLDFIQAAQYRDELFK 661

Query: 793 LKS 795
           L+ 
Sbjct: 662 LEE 664


>gi|257784749|ref|YP_003179966.1| excinuclease ABC, B subunit [Atopobium parvulum DSM 20469]
 gi|257473256|gb|ACV51375.1| excinuclease ABC, B subunit [Atopobium parvulum DSM 20469]
          Length = 746

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/701 (50%), Positives = 469/701 (66%), Gaps = 32/701 (4%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
                   Q+ + + P+GDQP AI +L +GI    + Q LLGVTGSGKTF+MAK IE + 
Sbjct: 23  REAGEEKLQVVSPFEPAGDQPQAIEKLAQGIEDGLRYQTLLGVTGSGKTFSMAKTIEKLN 82

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RP ++M PNK LAAQ+ SE K  FP+NAV YFVSYYDYYQPEAYVP++DTYIEK++SINE
Sbjct: 83  RPTLIMEPNKTLAAQVASEMKELFPNNAVVYFVSYYDYYQPEAYVPQSDTYIEKDASINE 142

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +++++RH AT SLL R D IVV+SVSCIYGIGS + Y+ +   +     +E+ + +  L+
Sbjct: 143 EVEKLRHQATSSLLSRRDVIVVASVSCIYGIGSPQDYAGLAPNVDKSVPLERDDFIKDLI 202

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R D  + RG FRV GD +++FP + E+   R+  FG+++E ISE   +TG+ +R 
Sbjct: 203 NVQYDRNDYDLQRGMFRVRGDVVDVFPPYAEN-PLRIEFFGDEVESISEVSTVTGEVLRE 261

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            + I I+  SHYVT RP +  A+  I EE++ R+ EL++  +LLEAQRL QR  YDLEML
Sbjct: 262 FDAIPIWPASHYVTERPKITHALTTISEEMEARVKELKENDKLLEAQRLAQRTNYDLEML 321

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           ET G C  IENYSR+L GR PGEPP TL +Y P+D +  +DESHVT+PQI GMY GD  R
Sbjct: 322 ETMGYCNGIENYSRHLDGRAPGEPPYTLIDYFPKDMICIIDESHVTVPQIRGMYEGDRSR 381

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL ++GFRLPS +DNRPLRF+E+    P  I VSATPG +E E      VEQIIRPTG
Sbjct: 382 KVTLVDHGFRLPSALDNRPLRFDEFEGRIPQFIYVSATPGDYE-ETVAQQQVEQIIRPTG 440

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP +++R  R Q++D+  E+     +  R+L+T LTKRMAEDLT++L +  I+V YMH
Sbjct: 441 LLDPKIDVRPVRGQIDDLISEVKERVAKKERVLVTTLTKRMAEDLTDHLLDEGIKVNYMH 500

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S+  TL+R+EIIRDLR GK DVLVGINLLREGLDIPE  LVAILDADKEGFLR++ SLIQ
Sbjct: 501 SDTATLDRVEIIRDLRQGKIDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNRRSLIQ 560

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV- 732
           T+GRAARN + +VI+YAD IT S+++AIDET RRRE Q   NK+H I P++VK+ I ++ 
Sbjct: 561 TMGRAARNASGQVIMYADKITDSMRIAIDETKRRRELQEAFNKEHGIVPKTVKKSITDIA 620

Query: 733 ---------IDPILLEDAATTNISIDAQQLS--------------------LSKKKGKAH 763
                    ID    ++      S D   L                     L + + +A 
Sbjct: 621 GFIAEASENIDKRKRKNGEFYTASNDEDSLEEQQESILEMPAELLTEELQNLPRSEVEAM 680

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
           L  +  +M  A+ ++++E AA +RD+I  ++S       DD
Sbjct: 681 LSGMEAEMAEASASMDYEHAAELRDQIVAIRSQLEGTTSDD 721


>gi|326335519|ref|ZP_08201706.1| excision endonuclease subunit UvrB [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692285|gb|EGD34237.1| excision endonuclease subunit UvrB [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 667

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/661 (50%), Positives = 450/661 (68%), Gaps = 5/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +D+ P GDQP AIA L+ GI+ +EK Q LLGVTGSGKTFT+A V+E +Q P +V+A
Sbjct: 3   FQLISDFKPMGDQPGAIASLVSGINDQEKYQTLLGVTGSGKTFTIANVVEQVQVPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK FFP+NAVEYFVSYYDYYQPEAY+P T  YIEK+ SINE I+RMR 
Sbjct: 63  HNKTLAAQLYNEFKAFFPNNAVEYFVSYYDYYQPEAYIPVTGVYIEKDLSINEDIERMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T +LL  R D +VV+SVSC+YGIG+   + + ++ +  G ++ + + +  LV+  Y R
Sbjct: 123 STTSALLSGRRDVLVVASVSCLYGIGNPLEFQKNVISIGEGQTLTRTKFMHQLVQSLYAR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                + G FRV GD I++FP + E    RV  FGN+IE I  F   T + I  +E I I
Sbjct: 183 TTADFLHGNFRVKGDVIDVFPGYSE-TPLRVHFFGNEIELIETFDRETNKTIERLEKINI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+K I+++L  ++   +  G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLQAAIKDIQDDLVKQIEFFQSAGKTLEAKRLEERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL  R PG  P  L +Y P+D L+ +DESH TIPQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDRRPPGSRPFCLIDYFPKDFLMVIDESHATIPQVRAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   I VSATP  +EL++  GI VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPTDYELQKSGGIYVEQVIRPTGLLDPKI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R ++ Q++D+ +EI    ++  R+L+T LTKRMAE+LT+YL +  +R RY+HS+V TL
Sbjct: 422 EVRPSKNQIDDLLEEIQKCVEEDQRVLVTTLTKRMAEELTKYLTKMEVRCRYVHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  S+ QT+GRAA
Sbjct: 482 ERIEIMQDLRKGLFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSARSMTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N + I+YAD IT S+++ I+ET  RREKQ+ +N  H I PQ + ++I   +    + 
Sbjct: 542 RNINGRAIMYADKITDSMRVTIEETAYRREKQMNYNLTHGITPQPLHKRIENALSKSPIT 601

Query: 740 D---AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +     T           +S+++ +  ++  RK M  A+  L+F +AA  RD +K L+  
Sbjct: 602 EFHYENTPKKKETTSTKPMSREELEKEIQQTRKLMEAASKELDFIQAAHYRDLLKELQEK 661

Query: 797 P 797
            
Sbjct: 662 L 662


>gi|24213349|ref|NP_710830.1| excinuclease ABC subunit B [Leptospira interrogans serovar Lai str.
           56601]
 gi|45658769|ref|YP_002855.1| excinuclease ABC subunit B [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|59799051|sp|Q72N95|UVRB_LEPIC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|59799069|sp|Q8F8A9|UVRB_LEPIN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|24194097|gb|AAN47848.1| excinuclease ABC subunit B [Leptospira interrogans serovar Lai str.
           56601]
 gi|45602013|gb|AAS71492.1| nucleotide excision repair subunit B [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 666

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/660 (51%), Positives = 459/660 (69%), Gaps = 4/660 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++ + Y P+GDQ  AI  +       EK   L+GVTGSGKTFTMA+VI+ +  P +V
Sbjct: 3   SVFKIHSAYQPAGDQVKAIQNIADSFQKGEKKVTLVGVTGSGKTFTMAQVIQNLGLPTLV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           ++ NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE+ID++
Sbjct: 63  LSHNKTLAAQLFREFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEEIDKL 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R  AT SLLER D ++VSSVSCIYG+GS E Y+  +V LK+GD++E+  ++  L+  QY 
Sbjct: 123 RLRATSSLLEREDVVIVSSVSCIYGLGSPEEYTNSVVALKVGDTIERDTVIRKLLHIQYN 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG FRV GDSIEI+P++  D   R+  FG++I+ IS   P+T Q I  +E   
Sbjct: 183 RNDLDFSRGNFRVRGDSIEIYPAYHTD-GIRIEFFGDEIDSISRINPVTAQTIFKLEKAY 241

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY   H++T  P +  A++ I+ E+  +     K  +LLEA+R+  R  YD+EML+  G 
Sbjct: 242 IYPAKHFITSGPKVKEAVENIRAEVDAQTDFFRKNNKLLEAERILSRTNYDMEMLQEMGY 301

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+LTGR PGE P  L +Y   + LL VDESHVTIPQI GM+ GD  RK TL 
Sbjct: 302 CNGIENYSRHLTGRKPGERPACLIDYFQGEFLLIVDESHVTIPQIGGMFAGDRARKQTLV 361

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS +DNRPL F+E+  L P T+ VSATP  +E+E+    +VEQIIRPTGL+DP 
Sbjct: 362 DFGFRLPSALDNRPLNFQEFETLTPRTLYVSATPAEYEIEKS-SKVVEQIIRPTGLLDPI 420

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V++R  + Q+ED+  EI      G R+L+T LTK+M+EDLT+Y  E  ++V Y+HSEV+T
Sbjct: 421 VDVRPTKNQIEDLLVEIRKRIDAGERVLVTTLTKKMSEDLTDYYEEIGLKVAYLHSEVET 480

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L+R+ IIRDLR G +DVL+GINLLREGLDIPE  LVAILDADKEGFLR+  SLIQTIGRA
Sbjct: 481 LDRVGIIRDLRKGIYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLIQTIGRA 540

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD  T S+  AI+ET RRR+ Q +HN K  I P ++K+++ ++I+    
Sbjct: 541 ARNVNGTAILYADKTTDSMAKAIEETKRRRKIQEDHNLKFGITPLTIKKEVGDIIEREEK 600

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHL--KSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           E  +   +  D ++   SKK     +  + LR++M  AA  L+FE AA +RD++  +++ 
Sbjct: 601 ERTSEDLVLEDVEKKFNSKKFPNKEVLKEKLREEMMKAAKELDFERAAILRDKMLSIQTE 660


>gi|302338834|ref|YP_003804040.1| excinuclease ABC subunit B [Spirochaeta smaragdinae DSM 11293]
 gi|301636019|gb|ADK81446.1| excinuclease ABC, B subunit [Spirochaeta smaragdinae DSM 11293]
          Length = 666

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/658 (51%), Positives = 456/658 (69%), Gaps = 5/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY PSGDQ AAI  L  G+ +  + Q L GVTGSGKTFTMA +I   Q P +V++
Sbjct: 7   FKLVSDYAPSGDQGAAIDALADGLSNGLRYQTLKGVTGSGKTFTMANIIRRAQLPTLVLS 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E + FFP+NAVEYFVSYYDYYQPEAYVP  D YIEK+SSINE+IDR+R 
Sbjct: 67  HNKTLAAQLYRELQGFFPNNAVEYFVSYYDYYQPEAYVPSKDLYIEKDSSINEEIDRLRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ER+D IVVS+VSCIYG+GS  +Y  M V+  +G+S+        L++ QY R 
Sbjct: 127 SATSSLMERSDVIVVSTVSCIYGLGSPVAYRDMRVKATVGESLNIASFARDLIRLQYDRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGTFR+ GD +E+FP++L++ A+R+ +  +++  I   +PLTG  I  +++++IY
Sbjct: 187 DAVLERGTFRIRGDVLEVFPAYLQE-AFRMELDWDEVVRIRRIHPLTGDTIEELDSVQIY 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+V P   ++TA++ I+ ELK +L   E  G+LLEAQRL  R  YDLEML+  G C 
Sbjct: 246 PAKHFVMPEEQVHTALERIRRELKDQLEYFEHRGKLLEAQRLRGRTEYDLEMLQEMGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS  L+GR  G+ P  L +Y PE  L F+DESHVT+PQ+  MY GD  RK  L E+
Sbjct: 306 GIENYSAPLSGRGEGQRPAVLLDYFPEKFLTFIDESHVTLPQVGAMYEGDRSRKMNLVEH 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL + E+  L    I VSATPG  E  + +  +VEQIIRPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLFYAEFEELVDRVIYVSATPGKLEKRRSE-RLVEQIIRPTGLLDPELE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q+ED+Y EI    +   R L+T LTK+M+EDLT+YL    ++VRY+HSE++T+E
Sbjct: 425 VRPTKGQIEDLYAEIRKRVECNERTLVTTLTKKMSEDLTDYLSGLGLKVRYLHSEIETIE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+RDLRLG FDVL+GINLLREGLD+PE  L+AILDADK GFLRS TSLIQTIGRAAR
Sbjct: 485 RVEILRDLRLGTFDVLIGINLLREGLDLPEVSLIAILDADKIGFLRSATSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N + KVI+YAD I+ +++ AI ET RRR  Q  +N++H I P ++K+ + +++     E 
Sbjct: 545 NEHGKVIMYADRISDAMKEAIGETERRRAIQEAYNEEHGITPTTIKKAVQDILVRKKEEA 604

Query: 741 AATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                 +I+  +     L   + K  ++ L + M   A NL FE+AA +RDEI RLK 
Sbjct: 605 KKGETETIEMVKAGYNILIPAERKRLIRHLEEMMLEHAKNLEFEQAAVVRDEIGRLKE 662


>gi|294790750|ref|ZP_06755908.1| excinuclease ABC subunit B [Scardovia inopinata F0304]
 gi|294458647|gb|EFG27000.1| excinuclease ABC subunit B [Scardovia inopinata F0304]
          Length = 711

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/691 (51%), Positives = 469/691 (67%), Gaps = 31/691 (4%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           ++   F +++ Y PSGDQP AI +L + ++S E   +L+G TG+GKT T A +IE +QRP
Sbjct: 17  RENKPFVVKSPYKPSGDQPQAIEELAERLNSGESDVVLMGATGTGKTATTAWLIEKLQRP 76

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAYVP+TDT+IEK+SSIN+ +
Sbjct: 77  TLILEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYVPQTDTFIEKDSSINDDV 136

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           +R+RH+AT +LL R D +VVS+VSCIYG+G+ E Y+  ++ L  GD + + +LL + VK 
Sbjct: 137 ERLRHAATANLLTRRDTVVVSTVSCIYGLGTPEEYASQMLFLHEGDEINRDDLLRTFVKM 196

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I +V 
Sbjct: 197 QYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDSISTLHPLTGDLIDHVT 255

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
           +I I+  +HYV     LN A+K IKEE+  R+ E +K+ +LLEAQRLE R TYDLEML  
Sbjct: 256 SIHIFPATHYVAGPDRLNRALKTIKEEMDQRVAEFKKQNKLLEAQRLEMRTTYDLEMLSQ 315

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G+C  +ENYSR+  GR PG PP TL ++ P+D LL +DESH T+PQI  MY GD  RK 
Sbjct: 316 IGTCPGVENYSRHFDGRQPGSPPHTLLDFFPDDFLLVIDESHQTVPQIGAMYEGDASRKR 375

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL EYGFRLPS MDNRPL+++E+      T+ +SATPG +EL    G +VEQIIRPTGLV
Sbjct: 376 TLVEYGFRLPSAMDNRPLKWDEFEQHIGQTVYLSATPGDYELGLSDG-VVEQIIRPTGLV 434

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+R    Q++D+  EI     +  R+L+T LTK+MAEDLT+YL +R I+V Y+HS+
Sbjct: 435 DPRVEVRPVEGQIDDLLGEIKDRVAKNERVLVTTLTKKMAEDLTDYLLDREIKVEYLHSD 494

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           V TL R+E++R LR G  DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTI
Sbjct: 495 VDTLRRVELLRQLREGTIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTI 554

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+  VI+YAD  T+++  AI ET RRRE Q+ +N KH+++PQ + +KI +V D 
Sbjct: 555 GRAARNVSGTVIMYADKETEAMSQAITETNRRREVQIAYNTKHHVDPQPLIKKISDVNDM 614

Query: 736 ILLEDAATTNI-----------------------------SIDAQQLSLSKKKGKAHLKS 766
           +  ED  T  +                                     L  +     ++ 
Sbjct: 615 LAKEDVDTQTLLDTGYRNSGKAGNSHLGVPKLDRDKAFKNRKQLIDAGLPAQDLADLIRQ 674

Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           L  QMH AA+ L FE AAR+RDEI+ LK   
Sbjct: 675 LSDQMHTAAEQLQFELAARLRDEIRDLKKEL 705


>gi|110636435|ref|YP_676642.1| excinuclease ABC subunit B [Cytophaga hutchinsonii ATCC 33406]
 gi|123059095|sp|Q11Z64|UVRB_CYTH3 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|110279116|gb|ABG57302.1| Excinuclease ABC subunit B [Cytophaga hutchinsonii ATCC 33406]
          Length = 673

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/667 (50%), Positives = 463/667 (69%), Gaps = 13/667 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQPAAI QL++G+   +  Q+LLGVTGSGKTFTMA VI+  Q+P +V++
Sbjct: 3   FNLTSKYEPTGDQPAAIKQLVEGVERNDPAQVLLGVTGSGKTFTMANVIQQTQKPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP N VEYF+SYYDYYQPEA++P +  YIEK+ +IN++I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPENLVEYFISYYDYYQPEAFMPTSGLYIEKDLAINQEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT SL+  R D IVV+SVSCIYGIG+ E + + IV L  G  + + +LL S V+  Y R
Sbjct: 123 SATSSLMSGRRDIIVVASVSCIYGIGNPEEFRKSIVVLHKGQQINRNKLLYSFVEILYNR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD+++++P++  D+A+R+ M+G+++E I    P TG++I   +++ +
Sbjct: 183 TTRDFTRGTFRVTGDTVDVYPAYA-DIAYRIQMWGDEVESIQMIEPETGKRISEQKSLTL 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VT + +LN A+ +I+++L  ++   E E R  EA+R+++R  +D+EM+   G C
Sbjct: 242 FPANLFVTGKDSLNNAIHHIQDDLMKQVQLFEMEKRYGEAKRIQERTEFDIEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PG+ P  L +Y P+D LL VDESHVTIPQI  M+ GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRMPGQRPFCLIDYFPDDFLLVVDESHVTIPQIRAMFGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS MDNRPL F+E+  +    I VSATP  +EL++ +G +VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPSAMDNRPLTFDEFESINTQAIYVSATPADYELQRSEGAVVEQIIRPTGLLDPQI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            I+    Q++D+ DEI    + G RIL+T LTKRMAE+LT++L    +R RY+HSEVKTL
Sbjct: 422 FIKPTVNQIDDLLDEIQERIEMGDRILVTTLTKRMAEELTKFLDGVGVRTRYIHSEVKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EI+R+LRLG FDVLVG+NLLREGLD+PE  LVAI+DADKEGFLR+  SL+QTIGRAA
Sbjct: 482 DRVEILRELRLGVFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRNVRSLVQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N KVI+YAD IT S+Q AIDET+RRR  QL +N+ H I P +V +   E++    + 
Sbjct: 542 RNSNGKVIMYADKITASMQQAIDETSRRRATQLAYNELHGITPITVNKSKDEIMGQTKVA 601

Query: 740 D-----------AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           D               +++ D     L+K +    +   +K M  AA +L+F EAAR RD
Sbjct: 602 DSNKFNKQYIEPEGEPSLAADPVVAMLNKTELTKMIDRAKKDMDKAAKDLDFVEAARYRD 661

Query: 789 EIKRLKS 795
           E+  L+ 
Sbjct: 662 EMFALQK 668


>gi|282859471|ref|ZP_06268576.1| excinuclease ABC, B subunit [Prevotella bivia JCVIHMP010]
 gi|282587699|gb|EFB92899.1| excinuclease ABC, B subunit [Prevotella bivia JCVIHMP010]
          Length = 681

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/680 (47%), Positives = 465/680 (68%), Gaps = 21/680 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L +G+   ++ Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELTSKYKPTGDQPEAIKELTEGLKRGDQSQVLLGVTGSGKTFTVANVIANVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPNNAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  SLL  R D I+VSSVSCIYG+G   +  + +V +K G  V++ E L  LV   Y R
Sbjct: 123 SAVSSLLSGRKDVIIVSSVSCIYGMGGPAAMQESVVHIKKGQIVDRNEFLRKLVDILYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++ +++  R++ + ++I+ I E  P+   ++ + +  +I
Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYSDNI-LRITWWDDEIDTIEEVDPIAFHRLASFDAYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L +++   ++ G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTTKEQTEQAIRMIQDDLVLQVDLFKELGESIKAQRIKERVEYDIEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  GE P  L ++ P+D L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRTAGERPYCLLDFFPKDYLVVIDESHVSVPQISAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL+FEE++ L    I VSATP  +EL + +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAALDNRPLKFEEFHNLIHQIIYVSATPADFELRETEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ +EI +  +   R+L+T LTKRMAE+LTEYL + +IR  Y+HS+V +L
Sbjct: 422 DVRPSENQIDDLMNEILIRVECEERVLVTTLTKRMAEELTEYLLDHDIRTAYIHSDVASL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++II DLR G +DVLVG+NLLREGLDIPE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIINDLRAGMYDVLVGVNLLREGLDIPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP---- 735
           RNVN KVI+YADTIT+S+Q  IDET RRR KQL++N+ H I P  + + I + +      
Sbjct: 542 RNVNGKVIMYADTITESMQKTIDETMRRRTKQLKYNEDHGITPTQIIKAIKDTLPTNGES 601

Query: 736 ---------------ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
                             E   T   + D   L ++K++ +  +++    M  AA +L+F
Sbjct: 602 AITSKGATIKNMQPKAYAEPTNTAAFAADPIILRMTKEQLEKSIQNTTALMKQAAKDLDF 661

Query: 781 EEAARIRDEIKRLKSSPYFQ 800
            +AA+ RDEI RL+     +
Sbjct: 662 LQAAQYRDEILRLQKELELK 681


>gi|254445611|ref|ZP_05059087.1| excinuclease ABC, B subunit [Verrucomicrobiae bacterium DG1235]
 gi|198259919|gb|EDY84227.1| excinuclease ABC, B subunit [Verrucomicrobiae bacterium DG1235]
          Length = 668

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/659 (52%), Positives = 464/659 (70%), Gaps = 8/659 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI  LL  I +  K Q LLGVTGSGKTF++A VI  + RPA+
Sbjct: 1   MGLFKLSSEYKPTGDQPVAINSLLDSIRAGNKFQTLLGVTGSGKTFSIANVIAELDRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SSIN++IDR
Sbjct: 61  VISHNKTLAAQLYSEFKRFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R S T SL+ R D IVV+SVSCIYG+GS E + ++++ LK+G+   +  LL  LV+  Y
Sbjct: 121 LRISTTSSLISRRDVIVVASVSCIYGLGSPEDFQELMIPLKVGEEFGRDRLLGDLVEILY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+ + RG FRV GD +++ P++LE    R+  +G++IE +SEF PLTG  I+ ++  
Sbjct: 181 ERNDVSLERGRFRVRGDVVDVMPAYLE-KGLRIEFWGDEIERLSEFDPLTGNVIQELQQF 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  + +VT +  + +A+  IK ELK R+ E E +G+LLEAQR+  R  YDLEM++  G
Sbjct: 240 DLYPANQFVTTKEKMESAVGLIKSELKERVAEFESKGQLLEAQRISMRTNYDLEMMQEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYS +L+GR  GE P  L ++  +D LL VDESHVTIPQI  MY GD  RK TL
Sbjct: 300 FCNGIENYSMHLSGRKAGERPFCLIDFFHKDMLLIVDESHVTIPQIGAMYAGDRSRKTTL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS ++NRP+ F+E+  +   T+ V+ATP  +E E+ + +I EQ+IRPTGL+DP
Sbjct: 360 VEHGFRLPSALENRPMNFQEFMEVTGQTVYVTATPAKFEREKSE-VIAEQVIRPTGLLDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V IR  + QVED+  EI  A  +G R+L+T LTKR++ED+T YL E++I V Y+HS++ 
Sbjct: 419 VVTIRPMKGQVEDLITEIRKAIDKGERVLVTTLTKRLSEDITAYLREKDISVEYLHSDID 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            LER+EI+R LR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSL QT GR
Sbjct: 479 ALERVEILRRLRAGRFDVLVGINLLREGLDLPEVALVAILDADKEGFLRSETSLTQTAGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+ N +VI YAD IT SI+  ++ T  RR KQ+E+N +H I P+SV     E +  +L
Sbjct: 539 AARHENGRVIFYADVITDSIRRTVETTEYRRSKQIEYNAEHGITPKSVNRGDQESLRQLL 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            E+ A++ I +            +A +  L  +M  AA  L FE+AA +RD+I  LKS 
Sbjct: 599 EEEDASSAIIVGED------DDVQAVIDELTVEMDEAAAKLEFEKAALLRDQIDSLKSG 651


>gi|320332650|ref|YP_004169361.1| UvrABC system protein B [Deinococcus maricopensis DSM 21211]
 gi|319753939|gb|ADV65696.1| UvrABC system protein B [Deinococcus maricopensis DSM 21211]
          Length = 671

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/659 (51%), Positives = 459/659 (69%), Gaps = 8/659 (1%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++Q+++ PSGDQP AI  L+ G+ S  + Q LLG TG+GKT++MAKVIE   RPA++MAP
Sbjct: 3   RVQSEFTPSGDQPTAIRSLVDGLESGLRYQTLLGATGTGKTYSMAKVIEETGRPALIMAP 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NKIL AQL SEF+ FFP  AVE+FVSYYDYYQPEAYVP  D +I+K+++IN++++R+RHS
Sbjct: 63  NKILTAQLASEFREFFPGAAVEFFVSYYDYYQPEAYVPGKDLFIDKDANINQELERLRHS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
            TRSLL R D IVV+SVSCIYG+G  E Y  + + LK+G  + +  +L  LV+ QY R D
Sbjct: 123 TTRSLLTRRDTIVVASVSCIYGLGDPEEYRALNLVLKVGQPIGRDAILDRLVELQYDRND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           I +  G FR  GD IEI+PS+ ++   R+ ++G+D++ I  ++P++G     ++   +Y 
Sbjct: 183 IELAPGRFRAKGDVIEIWPSY-DEQPLRLELWGDDLDRIVLYHPVSGDVQAELDATVVYP 241

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
             HYV+    +  A+  I++EL  R+   +  G+LLEAQR+++R  YDLEML+  G C  
Sbjct: 242 AKHYVSSAGNIERAIVTIQQELDERVEYFKASGKLLEAQRIKERTLYDLEMLKVLGYCSG 301

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSR++ GR PGE P T+ +Y   D + FVDESHVTIPQ+ GM  GD  RK TL +YG
Sbjct: 302 IENYSRHIDGRKPGETPYTMLDYFASDFVTFVDESHVTIPQVGGMSNGDRARKQTLVDYG 361

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPS MDNRPL F E+      T+ VSATPG +E E     I +QIIRPTGLVDP V++
Sbjct: 362 FRLPSAMDNRPLNFGEFLGKIGQTVFVSATPGPFEREHSDS-IADQIIRPTGLVDPVVQL 420

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R  + QVED+   +   A +G R L+T LTKRMAEDL EYL ++ +R RYMHS++ T+ER
Sbjct: 421 RPIKGQVEDILGRVRERAAKGERTLVTTLTKRMAEDLAEYLLDKGVRARYMHSDIDTVER 480

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             IIRDLRLG +DVL+GINLLREGLD+PE  LVAILDADK GFLRS+ SLIQTIGRAARN
Sbjct: 481 QVIIRDLRLGHYDVLIGINLLREGLDLPEVSLVAILDADKPGFLRSERSLIQTIGRAARN 540

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           VN +VILY D+IT ++Q A++ET RRREKQL +N +H I P ++++ + +VI     E+ 
Sbjct: 541 VNGEVILYGDSITPAMQAAMEETARRREKQLAYNAEHGITPTTIRKGVRDVIRG---EEE 597

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
           A    S D   L   +      L  L   M  A+++L+FE+AA +RD+I+ +++    +
Sbjct: 598 AELPQSPD---LGNDRDALMTQLTDLELDMWRASEDLDFEKAASLRDQIRAIEAKLQGK 653


>gi|60682121|ref|YP_212265.1| excinuclease ABC subunit B [Bacteroides fragilis NCTC 9343]
 gi|253567095|ref|ZP_04844546.1| excinuclease ABC subunit B [Bacteroides sp. 3_2_5]
 gi|265764258|ref|ZP_06092826.1| excinuclease ABC, B subunit [Bacteroides sp. 2_1_16]
 gi|81314815|sp|Q5LC24|UVRB_BACFN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|60493555|emb|CAH08342.1| UvrABC SOS-repair system protein B [Bacteroides fragilis NCTC 9343]
 gi|251944219|gb|EES84728.1| excinuclease ABC subunit B [Bacteroides sp. 3_2_5]
 gi|263256866|gb|EEZ28212.1| excinuclease ABC, B subunit [Bacteroides sp. 2_1_16]
 gi|301163591|emb|CBW23142.1| UvrABC SOS-repair system protein B [Bacteroides fragilis 638R]
          Length = 677

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/667 (49%), Positives = 458/667 (68%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELTSAYKPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   +   +++++ G ++ +   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIERGRTINRNVFLRRLVDSLYMR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV+ +G++I+ I E  P++G  I   E  KI
Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAYSDNL-LRVTFWGDEIDGIEEVDPVSGVTIAPFEAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAYFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELVQSEGIVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +  ++  R+L+T LTKRMAE+LTEYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQIRIEKEERVLVTTLTKRMAEELTEYLLNNNVRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN  VI+YAD IT S++L IDET RRREKQL +N++H I PQ +K+     +     E
Sbjct: 542 RNVNGMVIMYADKITDSMRLTIDETNRRREKQLAYNEEHGITPQQIKKARNLSVFGNGAE 601

Query: 740 DAAT------------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
              T             NI+ D     +SK + +  ++  RK M  AA  L F EAA+ R
Sbjct: 602 TEDTQKGTRAYVEPSSPNIAADPVVQYMSKAQLEKSMERTRKLMQEAAKKLEFIEAAQYR 661

Query: 788 DEIKRLK 794
           DE+ +++
Sbjct: 662 DELLKME 668


>gi|160888163|ref|ZP_02069166.1| hypothetical protein BACUNI_00571 [Bacteroides uniformis ATCC 8492]
 gi|317478936|ref|ZP_07938083.1| excinuclease ABC [Bacteroides sp. 4_1_36]
 gi|156862298|gb|EDO55729.1| hypothetical protein BACUNI_00571 [Bacteroides uniformis ATCC 8492]
 gi|316904913|gb|EFV26720.1| excinuclease ABC [Bacteroides sp. 4_1_36]
          Length = 686

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/680 (47%), Positives = 464/680 (68%), Gaps = 23/680 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P +
Sbjct: 1   MNKFELTSAYQPTGDQPEAIAQLTEGVREGLPAQTLLGVTGSGKTFTIANVIANINKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID+
Sbjct: 61  ILSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDK 120

Query: 258 MRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +R +AT +LL  R D +VVSSVSCIYG+G+   +   +++++ G +  +   L  LV   
Sbjct: 121 LRLAATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQGKNFSRNVFLRRLVDSL 180

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R DI + RG FRV GD+++I+ ++ +++  RV+ +G++++ I E  P++G  +   + 
Sbjct: 181 YVRNDIDLNRGNFRVKGDTVDIYLAYADNL-LRVTFWGDEVDSIEEVDPMSGVTVAKFDA 239

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
            KIY  + ++T +     A+  I+++L  ++   E EGR  EA+RL++R+TYD+EM+   
Sbjct: 240 YKIYPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAKRLQERVTYDMEMIREL 299

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRY  GR  G  P  L ++ PED L+ +DESHV++PQI  MY GD  RK  
Sbjct: 300 GHCSGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKIN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLP+ MDNRPL+F+E+  +    I VSATP  +EL + +GI+VEQ+IRPTGL+D
Sbjct: 360 LVEYGFRLPAAMDNRPLKFDEFEEMAKQVIYVSATPADYELMKSEGIVVEQVIRPTGLLD 419

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LTEYL   N++  Y+HS+V
Sbjct: 420 PIIEVRPSHNQIDDLMEEIQVRIEKNERTLVTTLTKRMAEELTEYLLNNNVKCNYIHSDV 479

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT G
Sbjct: 480 DTLERVKIMGDLREGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 539

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE--------- 727
           RAARNVN  VI+YAD IT S+QL IDET RRREKQL++N++H I PQ +K+         
Sbjct: 540 RAARNVNGMVIMYADKITDSMQLTIDETNRRREKQLKYNEEHGITPQQIKKAKNLNVFAT 599

Query: 728 ------------KIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAA 775
                       K         +E  +T+ ++ D     +S+K+ +  ++  +K M  AA
Sbjct: 600 NEASGEAVLSSEKFTSSTPRPYVEQESTSTMAADPIVQYMSRKQLEKSIERTKKLMQEAA 659

Query: 776 DNLNFEEAARIRDEIKRLKS 795
             L+F EAA+ RDE+ +++ 
Sbjct: 660 KKLDFIEAAQYRDEVLKMEE 679


>gi|213692614|ref|YP_002323200.1| excinuclease ABC, B subunit [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|254764901|sp|B7GSZ2|UVRB_BIFLI RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|213524075|gb|ACJ52822.1| excinuclease ABC, B subunit [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320458765|dbj|BAJ69386.1| excinuclease ABC subunit B [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 703

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/694 (50%), Positives = 467/694 (67%), Gaps = 31/694 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N  +    F +++ Y PSGDQP AI +L   I + E   +L+G TG+GKT T A +IE +
Sbjct: 4   NIERVDKPFVVKSPYQPSGDQPKAIEELATRIENGENDVVLMGATGTGKTATTAWLIERL 63

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN
Sbjct: 64  QRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNIN 123

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ++R+RH AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK G  + + +LL   
Sbjct: 124 DDVERLRHQATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKEGQQINRDDLLRRF 183

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG  I 
Sbjct: 184 VAMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAIRIEFFGDEIDRISTLHPLTGDVIA 242

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           +   + I+  SHYV     +  A+K I+EEL  RL EL K+G+ LEAQRL+ R TYDLEM
Sbjct: 243 HEPQVHIFPASHYVAGPERMERALKTIREELDGRLSELRKQGKELEAQRLDMRTTYDLEM 302

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G C  +ENYSR+L GR  G PP TL ++ P+D LL +DESHVT+PQI  MY GD  
Sbjct: 303 LTQVGVCSGVENYSRHLDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDAS 362

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS MDNRPL++ E+      T+ +SATPG +EL    G +VEQIIRPT
Sbjct: 363 RKRTLVEHGFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYELGLSDG-VVEQIIRPT 421

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP +++R  + Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+
Sbjct: 422 GLLDPKIDVRPVKGQIDDLLAEIKARVARNERALVTTLTKKMAEDLTDYLLERGIKVEYL 481

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++R LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 482 HSDVDTLRRVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLI 541

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+  VI+YAD  T++++ AIDET RRR KQ+ +N++H I+P+ + +KI +V
Sbjct: 542 QTIGRAARNVSGVVIMYADETTEAMRQAIDETDRRRAKQIAYNQEHGIDPKPLIKKISDV 601

Query: 733 IDPILLEDAATTNI-----------------------------SIDAQQLSLSKKKGKAH 763
            D +  ED  T  +                               +  +  L  +     
Sbjct: 602 NDMLAKEDVDTQTLLEGGYRNAGKAGNTHLGVPVLDPNEADKRHEEILKAGLPAQDLADL 661

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L +QMH AA+ L FE AAR+RDEI+ LK   
Sbjct: 662 IRQLSEQMHTAAEQLQFELAARLRDEIRDLKKEL 695


>gi|225012707|ref|ZP_03703142.1| excinuclease ABC, B subunit [Flavobacteria bacterium MS024-2A]
 gi|225003240|gb|EEG41215.1| excinuclease ABC, B subunit [Flavobacteria bacterium MS024-2A]
          Length = 662

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/661 (49%), Positives = 449/661 (67%), Gaps = 5/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+GDQP AI +++    +++    L GVTGSGKTFTMA  ++ +QRP +V+A
Sbjct: 3   FKLVSDFKPTGDQPKAIEEIVNQFQNQDSFVTLQGVTGSGKTFTMANAVQQLQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P + TYIEK+ SINE I+++R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPENAVEYFVSYYDYYQPEAYIPTSGTYIEKDLSINEDIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IVV+SVSC+YGIG+   + + ++ ++    + + +L+  LV+  Y R
Sbjct: 123 STTSSLLSGRRDVIVVASVSCLYGIGNPAEFEKNVITIERDQVISRTQLMHRLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RG FRV GD I++FP +  D+A+++  FG++IE I  F P+   ++   + + I
Sbjct: 183 TTAEFSRGNFRVLGDIIDVFPGYA-DIAFKIHFFGDEIELIEAFDPINNSRLEQYDKVNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    +  A+  I+++L  ++   ++ G+ LEA+RL +R  +DLEM+   G C
Sbjct: 242 YPANIFVTSPDIIQNAILQIQDDLVKQVDYFKEVGKHLEAKRLHERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P D L+ VDESHVTI Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGRAPGTRPFCLLDYFPNDFLMIVDESHVTISQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  L+   + VSATP  +ELE+ +G  VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFESLQNQVLYVSATPADYELEKTEGAFVEQIIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LT+YL    IR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLIEEIQVRVEKDERTLVTTLTKRMAEELTKYLSRAQIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QTIGRAA
Sbjct: 482 ERVEIMQDLRKGVFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL- 738
           RN+  K I+YAD ITKS+Q  IDET  RREKQ  +N K++I P ++ + +   +    L 
Sbjct: 542 RNIEGKAIMYADVITKSMQKTIDETNYRREKQNAYNVKNDITPTALNKSLDSALAKNSLS 601

Query: 739 --EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              +   +    +     L+K + +  ++ LRK M  AA +L+F EAA+ RD+IK L+  
Sbjct: 602 THANELESRKVAEEANRYLTKPQIEKKIRELRKDMEKAAKSLDFIEAAKYRDDIKLLQEK 661

Query: 797 P 797
            
Sbjct: 662 L 662


>gi|269958372|ref|YP_003328159.1| excinuclease ABC subunit B [Anaplasma centrale str. Israel]
 gi|269848201|gb|ACZ48845.1| excinuclease ABC subunit B [Anaplasma centrale str. Israel]
          Length = 652

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/658 (54%), Positives = 477/658 (72%), Gaps = 12/658 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +++ PSGDQP AI  L++GI    K Q LLGVTGSGKTFTMA VIE  QRPA+
Sbjct: 1   MQRFKISSEFEPSGDQPGAIDVLVRGISHGVKEQTLLGVTGSGKTFTMASVIERTQRPAV 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL+ E ++FFP NAVEYFVSYYDYYQPEAY+P++D YIEK++ IN++ID 
Sbjct: 61  IIAHNKTLAAQLHEEMRSFFPENAVEYFVSYYDYYQPEAYIPQSDVYIEKDALINDKIDL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSLLER D IVV+SVSCIYG+GS E YS+M + + +G  ++  +L   LV+ QY
Sbjct: 121 LRHSATRSLLERRDVIVVASVSCIYGLGSPELYSEMTIPVVLGMKLDMCQLQEKLVELQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR +    RG+F V GD++ +FPSH ED  W++S FG++++ I E  P +G     ++ I
Sbjct: 181 KRSNRH-ERGSFNVQGDALSVFPSHYEDRVWKISFFGDEVDSIQEVDPKSGVVTLKLDKI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           KI+ NSHYVTPRPTL  A+  I++EL        +  +++EA+R+ +R  +D+EM+  TG
Sbjct: 240 KIFPNSHYVTPRPTLLQAISEIEKELDEYAAYFRQCNKVVEAERILERTRFDIEMMRETG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           +C+ IENYSRYL G+  G+PP TL +Y+P+D+++F+DESH+TIPQI  MY GD  RKA L
Sbjct: 300 TCKGIENYSRYLCGKEAGDPPNTLLDYLPQDAIMFIDESHMTIPQIRAMYNGDRMRKANL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             +GFR+PS +DNRPL FEEW   +P  + VSATPG +EL+Q  G+ VEQ+IRPTGLVDP
Sbjct: 360 INHGFRMPSALDNRPLTFEEWEDRKPVVVYVSATPGQYELKQTGGVAVEQLIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              ++SA  Q+ DV  E      +G R+L+T LTK+MAE+LTEY+ E  I+V Y+HS+VK
Sbjct: 420 VCIVKSADGQIHDVMCESRATIARGYRVLITTLTKKMAENLTEYMREMGIKVAYLHSDVK 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEII DLRLG  DVLVG+NL+REGLDIPEC LV ILDADKEGFLRS TSLIQTIGR
Sbjct: 480 TLERIEIISDLRLGIIDVLVGVNLMREGLDIPECALVGILDADKEGFLRSTTSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VILYA+ +T S+Q A++ET RRRE Q  HNK+H I P++VK+ +   +    
Sbjct: 540 AARNVEGRVILYANVVTGSMQTAMEETNRRREIQRRHNKEHGIVPRTVKKPVQTSL---- 595

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAH--LKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                +  +    +  S +  +  A   +  L+K+M L A+NL+FE AA IR+ I+RL
Sbjct: 596 -----SERVGSRKKVSSRADAELPASCGVIELQKEMLLCAENLDFERAAEIRNRIRRL 648


>gi|91215169|ref|ZP_01252141.1| excinuclease ABC subunit B [Psychroflexus torquis ATCC 700755]
 gi|91186774|gb|EAS73145.1| excinuclease ABC subunit B [Psychroflexus torquis ATCC 700755]
          Length = 668

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/662 (50%), Positives = 463/662 (69%), Gaps = 6/662 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++D+ P+GDQP AI +L+KG+H+ E+ Q LLGVTGSGKTFTMA V+E +QRP +V+A
Sbjct: 3   FTLKSDFKPAGDQPQAIDKLVKGLHNNERYQTLLGVTGSGKTFTMANVVEEVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP +AVEYFVSYYDYYQPEA++P + TYIEK+ SIN++I+++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPDSAVEYFVSYYDYYQPEAFIPSSGTYIEKDLSINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IVV+SVSC+YGIG+   + + ++ +++   + + +LL  LV+  Y R
Sbjct: 123 STTSSLLSGRRDVIVVASVSCLYGIGNPAEFQKNVISIEVDQQISRTKLLQRLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +    RG FR+ GD++++FP +  D A+R+  FG++IEEI  F   T + +   + + I
Sbjct: 183 TEALFNRGNFRIKGDTLDVFPGYA-DHAYRIHFFGDEIEEIEAFDVETKEVMAKYDKLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    LN A+  I  +L  ++   +  G+ LEA+R+E+R  +DLEM++  G C
Sbjct: 242 YPANIFVTSPDILNQAIDQIAIDLGKQIEYFKDIGKPLEAKRIEERTNFDLEMIKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y P+D L+ VDESHVTIPQ+  MY GD  RK  L +
Sbjct: 302 SGIENYSRYLDGRKPGTRPFCLIDYFPDDFLMIVDESHVTIPQVGAMYGGDRSRKENLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPLR EE+  L+   + VSATP  +EL++  G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLRLEEYEALQNQVVYVSATPADYELQKSGGVVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R ++ Q++D+ +EIN+   +  RIL+T LTKRMAE+L++YL    IR RY+HS++ TL
Sbjct: 422 EVRPSQNQIDDLIEEINIRVDKDQRILVTTLTKRMAEELSKYLTRVKIRTRYIHSDIDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  +L QTIGRAA
Sbjct: 482 ERVEIMSDLRKGVFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRTLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           R++  K ILYAD IT S+Q  +D+T  RR+KQ+++N KHNI PQ+VK+ +   +     E
Sbjct: 542 RHLEGKGILYADKITVSMQKTMDQTDYRRQKQIDYNIKHNITPQAVKKSLDSALSGKKKE 601

Query: 740 DAATTNI----SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                 +    + +    + S+   K  +  +RK M  AA +L+F EAAR RDE+K L+ 
Sbjct: 602 PYEVIEMPTLEAAEEAVANYSESDLKKRMTKVRKSMEKAAKDLDFMEAARFRDELKMLQK 661

Query: 796 SP 797
             
Sbjct: 662 KV 663


>gi|288926680|ref|ZP_06420593.1| excinuclease ABC subunit B [Prevotella buccae D17]
 gi|288336531|gb|EFC74904.1| excinuclease ABC subunit B [Prevotella buccae D17]
          Length = 680

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/676 (48%), Positives = 461/676 (68%), Gaps = 20/676 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL  GI      Q+LLGVTGSGKTFT+A VI+ +++P ++++
Sbjct: 3   FELTSKYKPTGDQPEAIRQLTDGIKDGMPAQVLLGVTGSGKTFTVANVIQNVEKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN+ ID++R 
Sbjct: 63  HNKTLAAQLYQEMKGFFPRNAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDDIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  +LL  R D IVVSSVSCIYG+G   +  Q +++LK G+++++ E L  LV   Y R
Sbjct: 123 SAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQQSVIKLKKGETLDRNEFLRRLVDALYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD++++F ++ ++V  RV+ + ++I+ I E    T  ++ + E+ ++
Sbjct: 183 NDIDLQRGCFRVKGDTVDVFMAYSDNV-LRVTWWDDEIDAIEEVNAETFHRVESFESYEL 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  ++    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTEQAIRMIQDDLVKQVDYFNEIGDTIKAQRIKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  GE P  L ++ P+D LL VDESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRQAGERPYCLLDFFPKDFLLVVDESHVSVPQISAMYGGDRARKQNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPL+F+E+  L   TI VSATP  +EL + +G++VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLKFDEFLSLLHQTIYVSATPADFELREAEGVVVEQIIRPTGLLDPQI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ DEI   + +  R+L+T LTKRMAE+LTEYL   N+R  Y+HS+V TL
Sbjct: 422 DVRPSENQIDDLLDEILTRSHRNERVLVTTLTKRMAEELTEYLLNNNVRANYIHSDVATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIMNDLRAGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI+YADTIT+S+Q  IDET RRR  QL++N++H I PQ + + I   +     E
Sbjct: 542 RNVNGKVIMYADTITESMQRTIDETARRRSIQLKYNEEHGITPQQIVKAIGSALPTKGDE 601

Query: 740 DA------------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
           +                    +   + D   + +++++ +  + +    M  AA +L+F 
Sbjct: 602 EGTAAARSGHYPNLQAYLEPDSAAFAADPIVMHMTREQLEKSIANTTALMKQAAKDLDFI 661

Query: 782 EAARIRDEIKRLKSSP 797
           +AA+ RDEI RL+   
Sbjct: 662 QAAQYRDEIIRLQKQL 677


>gi|284929353|ref|YP_003421875.1| Excinuclease ABC subunit B [cyanobacterium UCYN-A]
 gi|284809797|gb|ADB95494.1| Excinuclease ABC subunit B [cyanobacterium UCYN-A]
          Length = 664

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/665 (49%), Positives = 461/665 (69%), Gaps = 6/665 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ++  + P+GDQP AI +L+  +    K Q LLG TG+GKTF++A VI+ +++P +++
Sbjct: 1   MFQLKAPFKPTGDQPRAIEELILSLKEGNKFQTLLGATGTGKTFSIASVIDKIKKPTLIL 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQL +E +NFFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK +SIN++ID +R
Sbjct: 61  AHNKTLAAQLCNELRNFFPNNAVEYFISYYDYYQPEAYIPLSDTYIEKSASINDEIDMLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSATRSL ER D I+++S+SCIYG+G    Y +  + L++G  + Q++LL  LV  QY R
Sbjct: 121 HSATRSLFERQDVIIIASISCIYGLGMPSEYLKASIPLEVGREINQRQLLRDLVNVQYSR 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ + RG FRV GD +EI P++ ED   R+  FG++++ I   +P++G  + +++ I I
Sbjct: 181 NDMELKRGRFRVKGDILEIVPAY-EDRVIRIEFFGDEVDSIRYLHPVSGDILEDLKKINI 239

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y   H+VT +  L+ + K I EEL+ +++  E+ G+LLE+QR+ QR  YDLE+L   G C
Sbjct: 240 YPARHFVTRKDRLDASCKAIAEELEQQIVNFEQAGKLLESQRISQRTRYDLELLREVGYC 299

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +ENYSR+L GR  GE P  L +Y+P+D LL VDESHVTIPQI GMY GD  RK  L +
Sbjct: 300 NGVENYSRHLAGRESGESPECLIDYLPKDWLLVVDESHVTIPQIRGMYNGDQARKKVLID 359

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS  DNRPL+ +E+       I VSATPG WELE+ +  +++Q+IRPTG++DP +
Sbjct: 360 HGFRLPSAADNRPLKSDEFWSKVNQCIFVSATPGEWELEKSEDKVIQQVIRPTGILDPKI 419

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R  + QV+D+  EI    Q+  RIL+T LTKRMAEDLTEY  ER ++VRY+HSE+K++
Sbjct: 420 SVRPTKNQVDDLLGEIKDRVQRQERILVTTLTKRMAEDLTEYFQEREVKVRYLHSEIKSI 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEI++DLR G+FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR + SLIQ IGRAA
Sbjct: 480 ERIEILQDLRNGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRGEKSLIQIIGRAA 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK----IMEVIDP 735
           R++N + ILY D +T S+  AI+ET RRR  Q  +N K+NI P+S+  +    I+  +D 
Sbjct: 540 RHINGQAILYGDKLTDSMIKAIEETERRRHIQSSYNDKNNIIPKSIISERNNSILNYLDI 599

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               D        D     +S  K    +K L  +M  +A+ L+FE AA+ RD+IK  + 
Sbjct: 600 SRSLDTEKLEEICD-HIEEISLDKIPELIKQLESKMEKSANQLDFELAAKYRDQIKHFRD 658

Query: 796 SPYFQ 800
               +
Sbjct: 659 KMLGR 663


>gi|53713912|ref|YP_099904.1| excinuclease ABC subunit B [Bacteroides fragilis YCH46]
 gi|81824991|sp|Q64T09|UVRB_BACFR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|52216777|dbj|BAD49370.1| excinuclease ABC subunit B [Bacteroides fragilis YCH46]
          Length = 677

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/667 (49%), Positives = 458/667 (68%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELTSAYKPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   +   +++++ G ++ +   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIERGRTINRNVFLRRLVDSLYMR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV+ +G++I+ I E  P++G  I   E  KI
Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAYSDNL-LRVTFWGDEIDGIEEVDPVSGVTIAPFEAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAYFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELVQSEGIVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI +  ++  RIL+T LTKRMAE+LTEYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQIRIEKEERILVTTLTKRMAEELTEYLLNNNVRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN  VI+YAD IT S++L IDET RRREKQL +N++H I PQ +K+     +     E
Sbjct: 542 RNVNGMVIMYADKITDSMRLTIDETNRRREKQLAYNEEHGITPQQIKKARNLSVFGNGAE 601

Query: 740 DAAT------------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
              T             NI+ D     +SK + +  ++  RK M  AA  L F EAA+ R
Sbjct: 602 TEDTQKGTRAYVEPSSPNIAADPVVQYMSKTQLEKSMERTRKLMQEAAKKLEFIEAAQYR 661

Query: 788 DEIKRLK 794
           DE+ +++
Sbjct: 662 DELLKME 668


>gi|255691528|ref|ZP_05415203.1| excinuclease ABC subunit B [Bacteroides finegoldii DSM 17565]
 gi|260622919|gb|EEX45790.1| excinuclease ABC subunit B [Bacteroides finegoldii DSM 17565]
          Length = 677

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/669 (49%), Positives = 462/669 (69%), Gaps = 15/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYGEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   + + +++++ G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMIDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV+ +G++I+ I E  P++G  +   E  KI
Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPVSGVTVAPFEAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFQEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+LTEYL   NIR  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELTEYLLNNNIRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGIYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE------------ 727
           RNVN KVI+YAD IT S++L IDET RRREKQL +N+ + I PQ +K+            
Sbjct: 542 RNVNGKVIMYADKITDSMRLTIDETNRRREKQLAYNEANGITPQQIKKARNLDVFGNANS 601

Query: 728 KIMEVIDPILLE-DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           +  E++       +  T NI+ D     +SK + +  ++  RK M  AA  L F EAA+ 
Sbjct: 602 ETNELLKEKQAYIEPTTPNIAADPVVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQY 661

Query: 787 RDEIKRLKS 795
           RDE+ +L++
Sbjct: 662 RDELLKLEN 670


>gi|257068672|ref|YP_003154927.1| excinuclease ABC subunit B [Brachybacterium faecium DSM 4810]
 gi|256559490|gb|ACU85337.1| Excinuclease ABC subunit B [Brachybacterium faecium DSM 4810]
          Length = 700

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/695 (52%), Positives = 483/695 (69%), Gaps = 28/695 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             + +  +    F++ ++Y PSGDQP AIA L K I+  E+  +LLG TG+GK+ T A +
Sbjct: 2   RPVTDLVRAEHPFEVVSEYRPSGDQPTAIADLTKRINDGEQDVVLLGATGTGKSATTAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMA NK LAAQL SEF+   PHNAVEYFVSYYDYYQPEAYVP++DTYIEK+
Sbjct: 62  IEQVQRPTLVMAHNKTLAAQLASEFRELLPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN +++R+RHSAT SLL R D +VVSSVSCIYG+G+ + Y   +VQL++GD +++ EL
Sbjct: 122 SSINAEVERLRHSATNSLLTRRDVVVVSSVSCIYGLGTPQEYVDRMVQLEVGDELDRDEL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L+  V  QY R D+   RGTFRV GD++EI P + E++A R+  FG++I+ +   +P+TG
Sbjct: 182 LTRFVDMQYDRNDVAFERGTFRVRGDTVEIIPMY-EELAIRIEFFGDEIDALYTLHPMTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + IR  + I I+  SHYV     L  A+  I+EEL  RL ELE + +LLEAQRL  R T+
Sbjct: 241 EVIRQEDHIHIFPASHYVAGPERLARAIGTIEEELAERLEELETQNKLLEAQRLRMRTTH 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEML   GS   +ENYSR+L GR PG  P TL +Y PED LL +DESHVT+PQI  MY 
Sbjct: 301 DLEMLRQMGSTNGVENYSRHLDGRAPGTAPNTLMDYFPEDFLLVIDESHVTVPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK TL ++GFRLPS +DNRPL F E+      T+ +SATP  +EL +  G +VEQI
Sbjct: 361 GDRSRKRTLVDFGFRLPSALDNRPLTFSEFTERTGQTVYLSATPAEYELNRAHG-VVEQI 419

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++  + Q++D+ +EI    Q+  R+L+T LTKRMAEDLT++L E  +R
Sbjct: 420 IRPTGLVDPEVIVKPVKGQIDDLREEIEKRVQRDERVLVTTLTKRMAEDLTDFLLENGVR 479

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V+Y+HS+V TL RIE++R LR G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+
Sbjct: 480 VQYLHSDVDTLRRIELLRSLRQGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSR 539

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           TSLIQTIGRAARNV+ +V +YAD +T S+Q AIDET RRREKQ+ +N +H I+P  ++++
Sbjct: 540 TSLIQTIGRAARNVSGQVHMYADRVTDSMQDAIDETNRRREKQIAYNTEHGIDPTPLRKR 599

Query: 729 IMEVIDPILLEDAATTNI-------------SIDAQQLSLSKKKGKA------------- 762
           I +V D +  ED  T  +             +  A+  S+   +G+              
Sbjct: 600 IADVTDMLAREDIDTDTLMATDYRSGKDRVAADRARANSVDSMQGRKVDLGEDPVGALTG 659

Query: 763 HLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            +  +  QMH AA++LNFE AAR+RDE++ LK   
Sbjct: 660 MIDEMTAQMHQAAESLNFEVAARLRDEVQELKKEL 694


>gi|160885710|ref|ZP_02066713.1| hypothetical protein BACOVA_03714 [Bacteroides ovatus ATCC 8483]
 gi|156108523|gb|EDO10268.1| hypothetical protein BACOVA_03714 [Bacteroides ovatus ATCC 8483]
          Length = 676

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/667 (49%), Positives = 462/667 (69%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   YELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT +LL  R D +VVSSVSCIYG+G+   + + +++++ G  +++   L  LV   Y R
Sbjct: 123 SATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMIDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV+ +G++I+ I E  P+TG  I   +  KI
Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPITGVTIAPFDAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFQEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+L EYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCTYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE----------KI 729
           RNVN KVI+YAD +T S++L IDET RRREKQL +N+ + I PQ +K+          K 
Sbjct: 542 RNVNGKVIMYADKMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNAKE 601

Query: 730 MEVI--DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
            + +  +     + +T NI+ D     +SK + +  ++  RK M  AA  L F EAA+ R
Sbjct: 602 ADELLKERHAYVEPSTPNIAADPIVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQYR 661

Query: 788 DEIKRLK 794
           DE+ +L+
Sbjct: 662 DELLKLE 668


>gi|189219825|ref|YP_001940466.1| excinuclease ABC subunit B, helicase [Methylacidiphilum infernorum
           V4]
 gi|189186683|gb|ACD83868.1| Excinuclease ABC subunit B, helicase [Methylacidiphilum infernorum
           V4]
          Length = 691

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/654 (51%), Positives = 447/654 (68%), Gaps = 5/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P GDQ  AI +L +GI + +K Q+LLGVTGSGKTFT+AK IE +Q+P +V+ 
Sbjct: 10  FKVVSPFEPCGDQGKAIDELSRGIKAGKKHQVLLGVTGSGKTFTIAKCIEKVQKPTLVIC 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE+K FFP +AVEYFVSY+DYYQPEAY+P TDTYIEK+SS+N +I+R+R 
Sbjct: 70  HNKTLAAQLYSEYKQFFPDSAVEYFVSYFDYYQPEAYIPSTDTYIEKDSSVNTEIERLRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLL R D IVV+SVSCIYG+GS E Y  +  Q+++G ++ + + L+ LV+  Y+R 
Sbjct: 130 SATNSLLTRRDVIVVASVSCIYGLGSPEDYESLCCQVEVGQNISRNQFLAMLVEMLYERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +EI      D   R+  FG+ I+ I+EF  LTG+ +  ++   I+
Sbjct: 190 DLQLTRGKFRVRGDVVEICHVSP-DRGLRIEFFGDRIDRITEFELLTGRSLCRLQKELIF 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SH+VT    L  A+  I+ EL  R+ ELE +G+LLEAQRL  R   DLEMLE  G C 
Sbjct: 249 PASHFVTTSEKLKRAIGSIRRELDERIAELESKGKLLEAQRLRLRTENDLEMLEELGFCN 308

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR  G  P TL ++ PED L  +DESH TIPQI GMY GD  RK TL E+
Sbjct: 309 GIENYSRHLSGRPAGSAPYTLLDFFPEDFLTVIDESHATIPQIQGMYEGDMSRKRTLVEH 368

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+       I VSATPG +EL Q  G ++EQIIRPTGL+DP VE
Sbjct: 369 GFRLPSALDNRPLSFSEFEAKIGQVIYVSATPGEYELRQTGGQVIEQIIRPTGLLDPEVE 428

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q++DV  E +   ++G R+L+  LTK+ AEDL++YL E   +VRY+HSE+  +E
Sbjct: 429 VRPLEGQIDDVIKESSRRIKEGQRVLVLTLTKQTAEDLSDYLRELGFKVRYLHSELDAIE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+R LR G FDVLVGINLLREGLD+PE  LV ILDADKEG+LRS+ SLIQ  GRAAR
Sbjct: 489 RVEILRGLRAGDFDVLVGINLLREGLDLPEVSLVCILDADKEGYLRSEKSLIQIAGRAAR 548

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +   KVILYAD +T+SI+  I  T  RR KQL++N++H + P+ V+ K +  +  ++  +
Sbjct: 549 HEKGKVILYADVMTQSIKKLIAVTNYRRAKQLQYNEEHGVTPRGVRAKELVSLHGLIRSE 608

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                   D Q    +K      +K L   M  A+  L FE+AA  RD+I+ LK
Sbjct: 609 EKEIVHFKDTQ----AKMDYMELIKELGAAMIEASAKLEFEKAALFRDQIEELK 658


>gi|313679222|ref|YP_004056961.1| excinuclease ABC subunit b [Oceanithermus profundus DSM 14977]
 gi|313151937|gb|ADR35788.1| Excinuclease ABC subunit B [Oceanithermus profundus DSM 14977]
          Length = 683

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/650 (51%), Positives = 457/650 (70%), Gaps = 9/650 (1%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207
            P GDQP AI QL++G  S  + Q LLG TG+GKT TMAKVIEA+ RP +VMAPNK+LAA
Sbjct: 23  EPRGDQPKAIRQLVEGFASGLRYQTLLGATGTGKTVTMAKVIEALGRPTLVMAPNKVLAA 82

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           QL +EF+  FP NAVEYF+SYYDYYQPEAYVP  D +IEK++SIN +I+R+RHS T+SLL
Sbjct: 83  QLAAEFRELFPENAVEYFISYYDYYQPEAYVPGRDLFIEKDASINPEIERLRHSTTQSLL 142

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
            R D IVV+SVS IYG+GS E Y  M + L++G  + ++E+L  LV+  Y R DI +  G
Sbjct: 143 TRRDVIVVASVSAIYGLGSPEDYYAMHLVLRVGQVMRREEILERLVELSYDRNDIDLQPG 202

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            FR  G+ IE++P++  +   R+ ++G++I+ I   +P++G++   ++T+ +   +HY T
Sbjct: 203 RFRAKGEVIEVWPAYGTE-PVRIELWGDEIDRIHTVHPISGERGAELDTLMLMPATHYAT 261

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
           P   L  A++ I+ ELK R+ E EK G+LLEAQRL +R  YDLE+L   G C  IENY+R
Sbjct: 262 PEERLRPAIQAIEAELKARVAEFEKAGKLLEAQRLRERTLYDLELLRLMGHCPGIENYAR 321

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
           +L+GR PGEPP TL +Y PED + F+DESHVT+PQI GMY GD+ RK  L EYGFRLPS 
Sbjct: 322 HLSGRAPGEPPYTLLDYFPEDFVTFIDESHVTVPQIRGMYNGDYARKKVLVEYGFRLPSA 381

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +DNRPL+ +E+       + VSATPG  ELE   G +VEQIIRPTGL+DP V ++ A  Q
Sbjct: 382 LDNRPLKLDEFLERTGQMVFVSATPGPEELEMS-GQVVEQIIRPTGLLDPKVTVKPAEGQ 440

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +ED+   I   A +  R+L+TVLTKRMAEDLT YL E  +R RYMH E+   ER  ++RD
Sbjct: 441 MEDLMAAIKERAARDERVLVTVLTKRMAEDLTAYLSEHGLRARYMHHELDAFERQALLRD 500

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LRLG FDVLVGINLLREGLD+PE  LVAILDADK GFLRS+ SLIQTIGRAARN   +V 
Sbjct: 501 LRLGHFDVLVGINLLREGLDLPEVSLVAILDADKTGFLRSERSLIQTIGRAARNAGGEVY 560

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           LYA+ ++++++ A++ET RRR  Q  +N++HNI P+++ + +  ++ P   E+A     +
Sbjct: 561 LYAEEVSEAMKAAVEETNRRRAVQEAYNREHNITPRTIDKSVRRMVKPEDFEEAPEPAAA 620

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +D       +++ K  +  L   M  A+ +L+FE AA +RD+++ L++  
Sbjct: 621 VD-------EEELKRQIADLELAMWSASQDLDFERAAELRDQLRALEAQL 663


>gi|153806678|ref|ZP_01959346.1| hypothetical protein BACCAC_00948 [Bacteroides caccae ATCC 43185]
 gi|149131355|gb|EDM22561.1| hypothetical protein BACCAC_00948 [Bacteroides caccae ATCC 43185]
          Length = 677

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/668 (49%), Positives = 462/668 (69%), Gaps = 15/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIAQL  G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELTSAYKPTGDQPEAIAQLTDGVIQGLPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   + + +++++ G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMLDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV+ +G++I+ I E  P+TG  I   E  KI
Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPVTGVTIAPFEAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFAEMAKQVIYVSATPAEYELIQSEGIVVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+LTEYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKSERVLVTTLTKRMAEELTEYLLNNNVRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGIYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE------------ 727
           RNVN KVI+YAD +T S++L IDET RRREKQL +N+ + I PQ +K+            
Sbjct: 542 RNVNGKVIMYADRMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNANS 601

Query: 728 KIMEVIDPILL-EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           +  E++       + +T NI+ D     +SK + +  ++  RK M  AA  L F EAA+ 
Sbjct: 602 ETEELLKEKHAYVEPSTPNIAADPVVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQY 661

Query: 787 RDEIKRLK 794
           RDE+ +L+
Sbjct: 662 RDELLKLE 669


>gi|158522387|ref|YP_001530257.1| excinuclease ABC subunit B [Desulfococcus oleovorans Hxd3]
 gi|158511213|gb|ABW68180.1| excinuclease ABC, B subunit [Desulfococcus oleovorans Hxd3]
          Length = 666

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/664 (51%), Positives = 451/664 (67%), Gaps = 2/664 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            + + T + P+GDQP AI +L   I S  +  + +GVTGSGKTFTMA VI  ++RPA+++
Sbjct: 1   MYDLTTSFTPAGDQPRAIRRLCDQIRSGRRHNVFVGVTGSGKTFTMAHVIAELKRPALII 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY+EF   FP NAVEYFVSYYD+YQPEAY+P TDTYI+K+SSIN+ ID+MR
Sbjct: 61  APNKTLAAQLYNEFHALFPRNAVEYFVSYYDFYQPEAYLPVTDTYIQKDSSINDTIDKMR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSATRS+L R D IVV+SVSCI+G+GS E Y  + V+L  G  +++  LL+ LV  QY+R
Sbjct: 121 HSATRSVLSRPDVIVVASVSCIFGLGSPEDYRGLRVELAPGMELDRDRLLADLVAIQYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RG FRV GD ++IFP+  E+ A RV  FG+++E + E  PL G     +    I
Sbjct: 181 NDYDFSRGVFRVRGDRVDIFPASEEEAALRVEFFGDEVEALFEIDPLKGSVRGKIPRAVI 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVT +      +  + EELK+R+      G+L+EAQR+E+R  +DLEM+   G C
Sbjct: 241 YPATHYVTRQQDRKAIVDRVNEELKVRIDHFRAAGKLIEAQRIEERTRFDLEMILEMGYC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LTGR PG+PP TL +Y P+D LLF+DE H+T+PQ+  MY+GD  RK+TL E
Sbjct: 301 NGIENYSRHLTGREPGQPPATLLDYFPDDFLLFLDECHITVPQLGAMYKGDHSRKSTLVE 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPT--TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
           +GFRLPS +DNRPL FEE+         I VSATP ++E  +    + EQI+RPTGLVDP
Sbjct: 361 FGFRLPSALDNRPLTFEEFEEKTGRAAVIYVSATPAAYEYRKAGDAVAEQIVRPTGLVDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+RSA  QV+ ++DEI    ++  R+L+T LTKRMAEDLT+Y  E  ++ RY+HSEVK
Sbjct: 421 RIEVRSAENQVDHLFDEIRARVEKNERVLITTLTKRMAEDLTDYYAELGVKTRYLHSEVK 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+ +I +LR G  DVL+GINLLREGLDIPE  LVA+LDADKEGFLRS+ SLIQ  GR
Sbjct: 481 TLERMAVISELRRGDVDVLIGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLIQIFGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN  VILYAD IT ++  A+DET RRR+ Q  +N  H+I P+++ +++        
Sbjct: 541 AARNVNGTVILYADRITDAMARAMDETNRRRKIQATYNTDHHITPRTIFKEMSPDFGAQG 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            + A  +    +              ++ L K+M  AAD+  FE+AA IRD I  L+   
Sbjct: 601 GDRAGPSAAVAETLARYGDTDDLDEIIRRLEKEMKAAADDYEFEKAADIRDRIAALRKLI 660

Query: 798 YFQG 801
            F G
Sbjct: 661 VFDG 664


>gi|217076276|ref|YP_002333992.1| excinuclease ABC subunit B [Thermosipho africanus TCF52B]
 gi|226695570|sp|B7IEY7|UVRB_THEAB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|217036129|gb|ACJ74651.1| excinuclease ABC, B subunit [Thermosipho africanus TCF52B]
          Length = 661

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/658 (48%), Positives = 453/658 (68%), Gaps = 2/658 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ PSGDQP AI +L++G+    ++Q LLGVTGSGKTFTMAKV+E + +P +++
Sbjct: 1   MFKVYSDFSPSGDQPEAIKKLVEGLQKGYRIQTLLGVTGSGKTFTMAKVVEKVGKPTLII 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           +PNK LAAQLYSEFK+FFP N VE+FVSYYDYYQPEAY+P  D YIEK + INE I++MR
Sbjct: 61  SPNKTLAAQLYSEFKSFFPENKVEFFVSYYDYYQPEAYIPTRDLYIEKNADINEVIEKMR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA +S++ R D IVV+SVS IY  G  + +S +   L +G  ++ +  L+ L +  Y+R
Sbjct: 121 ISAIKSIMTRKDVIVVASVSAIYNCGDPKDFSDLNFVLSVGQEIDLEGFLTHLARIGYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           ++   + GTFRV GD IEI+P + ++   R+ +FG++I+ I  F PL  + +  ++ + I
Sbjct: 181 KEEVALGGTFRVKGDVIEIYPRYQDE-GIRIELFGDEIDSIYTFDPLNRKILEKLDRVVI 239

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    ++T    +  A+K I +EL+ +L   +K+G+ LEA+RL+QR   D+E+L   G C
Sbjct: 240 YPTKEFITTEEKIQRAVKSILKELEEQLEYFKKQGKHLEAERLKQRTMNDIELLTALGYC 299

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GRNPG+PP +L +Y  +D L+F+DESH+TIPQ+  MYRGDF RK  L +
Sbjct: 300 SGIENYSRHFDGRNPGDPPYSLLDYFGDDYLVFIDESHITIPQLRAMYRGDFSRKKNLVD 359

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP   DNRPL+FEE+       I VSATPG +E+   Q  +VEQIIRPTGLVDP V
Sbjct: 360 YGFRLPCAYDNRPLKFEEFWNKVKNVIFVSATPGDFEINNSQQ-VVEQIIRPTGLVDPEV 418

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + Q++D+ +EI    ++  R L+TVLTK+ AE L EYL E  I+  Y+HSE+ T+
Sbjct: 419 EVRPTQNQIDDLVNEIAKIRKRNERALVTVLTKKTAEKLAEYLIEMGIKALYIHSELDTI 478

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+E+++ LR G  +V+VG+NLLREGLD+PE  LVAILD+D EGFLRS+T+LIQ IGR A
Sbjct: 479 ERVEVLKKLRRGDVEVVVGVNLLREGLDLPEVSLVAILDSDTEGFLRSETTLIQIIGRVA 538

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N KVI+YAD IT +++ AIDET RRR+ Q+E+NKKH I P+++ + + E I    + 
Sbjct: 539 RNINGKVIMYADKITPAMKKAIDETNRRRKIQIEYNKKHGITPKTIIKPLDEEIFKQFMT 598

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           D       I            + ++  L ++M+ AA  L +E+AAR+RDE+  ++   
Sbjct: 599 DEDEEKEEIKTIFELKESLSIEEYIALLEEEMYKAASELRYEDAARLRDELFNIREKL 656


>gi|86132353|ref|ZP_01050948.1| excinuclease ABC, B subunit [Dokdonia donghaensis MED134]
 gi|85817272|gb|EAQ38455.1| excinuclease ABC, B subunit [Dokdonia donghaensis MED134]
          Length = 666

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/655 (51%), Positives = 465/655 (70%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q+D+ P+GDQP+AI QL+ GI+  E  Q LLGVTGSGKTFT+A VI+  ++P +++A
Sbjct: 3   FKLQSDFKPTGDQPSAIKQLVDGINKNETYQTLLGVTGSGKTFTVANVIQETEKPTLILA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEA++P +  YIEK+ SINE+I++MR 
Sbjct: 63  HNKTLAAQLYSEFKAFFPDNAVEYFVSYYDYYQPEAFIPSSGVYIEKDLSINEEIEKMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IVV+SVSC+YGIG+   + + I ++K    + +   L  LV+  Y R
Sbjct: 123 STTTSLLSGRRDVIVVASVSCLYGIGNPAEFEKNITEIKQDQVMARTMFLKKLVQGLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +    RG FR+ GD++E+FP +  D+A+RV  FG++IEEI  F P + + I     ++I
Sbjct: 183 TEGEFNRGNFRIKGDTVEVFPGYA-DMAFRVHFFGDEIEEIEAFDPASAEVIEKYSRLRI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +  L  A+  I E+L  ++   E+ G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSQDVLQGAINQIGEDLTKQVSFFEEVGKHLEAKRLDERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L ++ P+D L+ VDESHVT+ Q+S MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDFFPDDYLMVVDESHVTVSQVSAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEEW  ++   I VSATP  +EL++ +G  VEQIIRPTGL+DP V
Sbjct: 362 YGFRLPAAMDNRPLKFEEWEMMQNQVIYVSATPADYELQKSEGTYVEQIIRPTGLLDPIV 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EIN   ++  R+L+T LTKRMAE+LT+YL   +IR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLIEEINKVTERNERVLVTTLTKRMAEELTKYLTRIDIRTRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+E+++DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QTIGRAA
Sbjct: 482 ERVELMQDLRKGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736
           RNVN K I+YAD ITKS+Q  ID++  RR+KQ+++N K+ + P ++K+ +   +   +  
Sbjct: 542 RNVNGKAIMYADKITKSMQETIDDSNYRRQKQIDYNNKNGLTPMAIKKSLDNALTRKETY 601

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
            +E     N++ +  +  L+K + +  ++S RK M  AA  L+F +AA++RD+IK
Sbjct: 602 KIEAEELVNLAAEDAEEYLTKPQIEKKIRSTRKAMEAAAKELDFMQAAKLRDQIK 656


>gi|298207799|ref|YP_003715978.1| excinuclease ABC subunit B [Croceibacter atlanticus HTCC2559]
 gi|83850437|gb|EAP88305.1| excinuclease ABC subunit B [Croceibacter atlanticus HTCC2559]
          Length = 668

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/661 (50%), Positives = 455/661 (68%), Gaps = 6/661 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++++Y P+GDQP AI QL+  I   E+   LLGVTGSGKTFT+A VI+ +QRP +V+A
Sbjct: 3   FTIESEYKPTGDQPGAIKQLVSNIEENEQYSTLLGVTGSGKTFTVANVIKEVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK+FFPHNA+EYFVSYYDYYQPEA++P + TYIEK+ SINE+I+++R 
Sbjct: 63  HNKTLAAQLYSEFKSFFPHNAIEYFVSYYDYYQPEAFIPTSGTYIEKDLSINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D +VV+SVSC+YGIG+   + + ++ +K    + + ELL  LV+  Y R
Sbjct: 123 STTSSLLSGRRDVLVVASVSCLYGIGNPVEFQKNVISIKRDQQISRTELLKKLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                  G FR+ GD+++++PS+ +D A+R+  FG++IE+I +F   T   I   E + I
Sbjct: 183 TTGEFNHGNFRIKGDTLDVYPSYADD-AFRIHFFGDEIEDIEQFDVQTNTVIEKYERLNI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L+ A+  I  +L  +    +  G+ LEA+RLE+R  +DLEM++  G C
Sbjct: 242 YPANMFVTSPDVLHKAIDNIALDLGKQTEYFKDIGKHLEAKRLEERTNFDLEMIKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L +Y PED L+ VDESHVTIPQ+  MY GD  RK  L +
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDYFPEDYLMVVDESHVTIPQVHAMYGGDRSRKENLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL+FEE+  L+   I VSATP  +EL++  G+ VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAALDNRPLKFEEFEALQNQVIYVSATPADYELQKTDGVYVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI     +  R L+T LTKRMAE+L +YL   +IR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLIEEIQTRVDKDQRTLVTTLTKRMAEELVKYLTRIDIRCRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QTIGRAA
Sbjct: 482 ERVEIMQDLRKGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           R++  K I+YAD IT S+Q  IDET  RR KQ+ +N KHNI P ++K+ I   +    +E
Sbjct: 542 RHLEGKAIMYADKITDSMQKTIDETEYRRTKQINYNTKHNITPTALKKGIDSALAGKKVE 601

Query: 740 ----DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               + A T  + + +    ++ +    ++ +RK M  AA  L+F EAAR RDEIK L+ 
Sbjct: 602 PYKFEKAPTLKAAEEEVAYFTEDQLDKRIREVRKAMEKAAKELDFIEAARFRDEIKMLQQ 661

Query: 796 S 796
            
Sbjct: 662 K 662


>gi|260174430|ref|ZP_05760842.1| excinuclease ABC subunit B [Bacteroides sp. D2]
 gi|293370229|ref|ZP_06616789.1| excinuclease ABC, B subunit [Bacteroides ovatus SD CMC 3f]
 gi|299146196|ref|ZP_07039264.1| excinuclease ABC subunit B [Bacteroides sp. 3_1_23]
 gi|315922697|ref|ZP_07918937.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|292634726|gb|EFF53255.1| excinuclease ABC, B subunit [Bacteroides ovatus SD CMC 3f]
 gi|298516687|gb|EFI40568.1| excinuclease ABC subunit B [Bacteroides sp. 3_1_23]
 gi|313696572|gb|EFS33407.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 676

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/667 (49%), Positives = 462/667 (69%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   YELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT +LL  R D +VVSSVSCIYG+G+   + + +++++ G  +++   L  LV   Y R
Sbjct: 123 SATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMMDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV+ +G++I+ I E  P+TG  I   +  KI
Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPITGVTIAPFDAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFQEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+L EYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCTYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE----------KI 729
           RNVN KVI+YAD +T S++L IDET RRREKQL +N+ + I PQ +K+          K 
Sbjct: 542 RNVNGKVIMYADKMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNAKE 601

Query: 730 MEVI--DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
            + +  +     + +T NI+ D     +SK + +  ++  RK M  AA  L F EAA+ R
Sbjct: 602 ADELLKERHAYVEPSTPNIAADPIVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQYR 661

Query: 788 DEIKRLK 794
           DE+ +L+
Sbjct: 662 DELLKLE 668


>gi|255009580|ref|ZP_05281706.1| excinuclease ABC subunit B [Bacteroides fragilis 3_1_12]
 gi|313147357|ref|ZP_07809550.1| excinuclease ABC subunit B [Bacteroides fragilis 3_1_12]
 gi|313136124|gb|EFR53484.1| excinuclease ABC subunit B [Bacteroides fragilis 3_1_12]
          Length = 677

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/667 (49%), Positives = 460/667 (68%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELTSAYKPTGDQPEAIAQLTEGVLEGIPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYGEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   +   +++++ G ++ +   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYDNVIEIERGRTINRNVFLRRLVDSLYMR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV+ +G++I+ I E  P++G  I   E  KI
Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAYSDNL-LRVTFWGDEIDGIEEVDPVSGVTIAPFEAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAYFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELVQSEGIVVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+LTEYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEREERVLVTTLTKRMAEELTEYLLNNNVRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-----------K 728
           RNVN  VI+YAD IT S++L IDET RRREKQL +N++H I PQ +K+           +
Sbjct: 542 RNVNGMVIMYADKITDSMRLTIDETNRRREKQLAYNEEHGITPQQIKKARNLAVFGNGNE 601

Query: 729 IMEVIDPILL-EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           + E         + ++ NI+ D     +SK + +  ++  RK M  AA  L F EAA+ R
Sbjct: 602 MEETQKATRAYVEPSSPNIAADPVVQYMSKAQLEKSMERTRKLMQEAAKKLEFIEAAQYR 661

Query: 788 DEIKRLK 794
           DE+ +++
Sbjct: 662 DELLKME 668


>gi|116327526|ref|YP_797246.1| excinuclease ABC subunit B [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331861|ref|YP_801579.1| excinuclease ABC subunit B [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280403|sp|Q04QJ9|UVRB_LEPBJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|122284674|sp|Q054D2|UVRB_LEPBL RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|116120270|gb|ABJ78313.1| Helicase subunit of the DNA excision repair complex [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116125550|gb|ABJ76821.1| Helicase subunit of the DNA excision repair complex [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 666

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/658 (52%), Positives = 458/658 (69%), Gaps = 4/658 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++ + Y P+GDQ  AI  +        +   L+GVTGSGKTFTMA+VI+ +  P +V
Sbjct: 3   SIFKIHSAYKPAGDQIKAIENIADSFQKGAEKVTLVGVTGSGKTFTMAQVIQNLGLPTLV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           ++ NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+SSINE+ID++
Sbjct: 63  LSHNKTLAAQLFREFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEEIDKL 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R  AT SLLER D ++VSSVSCIYG+GS E Y+  +V LK GD++E+  ++  L+  QY 
Sbjct: 123 RLRATSSLLEREDVVIVSSVSCIYGLGSPEEYTNSVVALKTGDTIERDAVIRKLLHIQYN 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RG FRV GDSIEI+P++  D   R+  FG++I+ IS   P+T Q I  +E   
Sbjct: 183 RNDIDFSRGNFRVRGDSIEIYPAYHTD-GIRIEFFGDEIDSISRINPITAQTILKLEKTY 241

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY   H++T  P +  A++ IK EL+ + +   K  +LLEA+R+  R  YD+EML+  G 
Sbjct: 242 IYPAKHFITSGPKVKVAIENIKAELEAQALFFRKNDKLLEAERIISRTNYDMEMLQEMGY 301

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+LTGR  GE P  L +Y   + LL VDESHVTIPQI GM+ GD  RK TL 
Sbjct: 302 CNGIENYSRHLTGRKAGERPACLIDYFQGEFLLIVDESHVTIPQIGGMFAGDKARKQTLV 361

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS +DNRPL FEE+  L P T+ VSATP  +E+E+    +VEQIIRPTGL+DP 
Sbjct: 362 DFGFRLPSALDNRPLNFEEFETLTPKTLYVSATPADYEMEKS-SKVVEQIIRPTGLLDPI 420

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+RS + Q+ED+  EI      G RIL+T LTK+M+EDLT+Y  E  ++V Y+HSEV+T
Sbjct: 421 VEVRSTKNQIEDLLVEIRKRIDVGERILITTLTKKMSEDLTDYYKEIGLQVAYLHSEVET 480

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L+R+ IIRDLR G +DVL+GINLLREGLDIPE  LVAILDADKEGFLR+  SLIQT+GRA
Sbjct: 481 LDRVAIIRDLRKGIYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLIQTVGRA 540

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN   ILYAD IT S+  AIDET RRR+ Q +HN K  I P ++++++ ++I+    
Sbjct: 541 ARNVNGTAILYADKITDSMAKAIDETKRRRKIQEDHNLKFGITPLTIRKEVNDIIEREEK 600

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHL--KSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +  +   +  D ++   SKK     +    LR++M  AA  L+FE AA +RD++  ++
Sbjct: 601 KRTSEDLVLEDVEKKFNSKKFPNKEVLKDKLREEMMKAAKELDFERAAILRDKMLSIQ 658


>gi|190571138|ref|YP_001975496.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018542|ref|ZP_03334350.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357410|emb|CAQ54844.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995493|gb|EEB56133.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 644

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/652 (56%), Positives = 469/652 (71%), Gaps = 17/652 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI  L+ G++S ++ Q+LLGVTGSGKTFTMA VI    RPA++MA
Sbjct: 3   FQIVTHFQPAGDQPQAIDNLVAGLNSNKRDQVLLGVTGSGKTFTMANVIARTNRPALIMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E + FFPHNAV YF+SYYDYYQPEAY P+TDTYIEK+S INE+ID +R+
Sbjct: 63  HNKTLAAQLYEEMRGFFPHNAVGYFISYYDYYQPEAYSPQTDTYIEKDSLINERIDMLRY 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  SLLER D IVV+SVSCIYG+GS ESY  M + L  GD +   + L++LV  QYKR 
Sbjct: 123 SAICSLLERRDTIVVASVSCIYGLGSPESYLSMTLTLSAGDKIHVNDFLNNLVNLQYKRS 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG FRV GD I+IFP++ E+ AWR+S+FG++IEEISE   +    IR ++T+ I+
Sbjct: 183 DVRFERGYFRVRGDIIDIFPAYYENKAWRLSLFGDEIEEISEIDAMNSNIIRCIDTVTIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NS+Y T R TL  A++ IK+EL  RL     + +++EA+RLEQR  +D+EM+  TG C+
Sbjct: 243 PNSYYTTSRETLLQAVQLIKKELHERLDYYYSQNKIVEAKRLEQRTNFDIEMMMATGVCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL G   G+PPPTLFEY+P+D +LFVDESHVT+PQI  MY G+  RK  L +Y
Sbjct: 303 GIENYSRYLYGMKAGDPPPTLFEYLPKDVILFVDESHVTVPQIGAMYSGNEARKKKLIDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+ EEW  +RP TI VSATPG +ELE+     +EQ+IRPTGL DP   
Sbjct: 363 GFRLPSAFDNRPLKLEEWEAIRPQTIYVSATPGKYELEKTNHAFIEQVIRPTGLTDPICT 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I+   +QV+DV  E  +  ++G  IL+T LTK+MAE L E++ E +++V Y+HS++  LE
Sbjct: 423 IKPTESQVDDVIHEAQVTIKKGFCILITTLTKKMAEKLAEHMSELSMKVTYLHSDIGALE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII  LR  + DVLVG+NLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RIEIICKLRSKEIDVLVGVNLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  +VILYAD IT S+  A+ ET RRR+KQ EHN  HNI P+++ + I   +   ++ +
Sbjct: 543 NVEGRVILYADKITNSMDRALKETERRRKKQTEHNTLHNIVPKTIIKPISNTLQEKVVIE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                        + SK    +    L+KQM   A+NL FEEAA+I+  I+R
Sbjct: 603 -------------NFSKDDLNS----LKKQMLKHAENLEFEEAAKIKSIIER 637


>gi|298482857|ref|ZP_07001040.1| excinuclease ABC subunit B [Bacteroides sp. D22]
 gi|298271057|gb|EFI12635.1| excinuclease ABC subunit B [Bacteroides sp. D22]
          Length = 676

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/667 (49%), Positives = 462/667 (69%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   YELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   + + +++++ G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMMDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV+ +G++I+ I E  P+TG  I   +  KI
Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPITGVTIAPFDAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFQKMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+L EYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGIYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE----------KI 729
           RNVN KVI+YAD +T S++L IDET RRREKQL +N+ + I PQ +K+          K 
Sbjct: 542 RNVNGKVIMYADRMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNAKE 601

Query: 730 MEVI--DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
            + +  +     + +T NI+ D     +SK + +  ++  RK M  AA  L F EAA+ R
Sbjct: 602 ADELLKERHAYVEPSTPNIAADPVVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQYR 661

Query: 788 DEIKRLK 794
           DE+ +L+
Sbjct: 662 DELLKLE 668


>gi|257126291|ref|YP_003164405.1| excinuclease ABC subunit B [Leptotrichia buccalis C-1013-b]
 gi|257050230|gb|ACV39414.1| excinuclease ABC, B subunit [Leptotrichia buccalis C-1013-b]
          Length = 657

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/655 (54%), Positives = 479/655 (73%), Gaps = 5/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI ++++ +      Q+LLGVTGSGKTFT+A VIE + RPA++MA
Sbjct: 3   FKIHSKFQPTGDQPQAIQKIVENLEDGITDQILLGVTGSGKTFTVANVIEKINRPALIMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E+K FFP NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN++ID++RH
Sbjct: 63  PNKTLAAQLYNEYKQFFPENAVEYFVSYYDYYQPEAYIMQTDTYIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R D I+V+SVS IYG+GS E+Y +  + + +    E+ EL+  L+  +Y+R 
Sbjct: 123 AATAALLNRRDVIIVASVSAIYGLGSPEAYKKRSIPIDVETGFERNELIKRLISLRYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +++ PS+ +D  +R   FG+D+E ISE   LTGQKIRN++ I I 
Sbjct: 183 DIAFERGKFRVKGDILDLHPSY-QDTGYRFEFFGDDLESISEINTLTGQKIRNIKRITIM 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY+T   T     + IK+E++ R+   +KEG+LLEAQR+EQR  YDLEM+E  G C+
Sbjct: 242 PATHYLTNEDT-KVMFESIKKEMEERVNFFQKEGKLLEAQRIEQRTKYDLEMIEEIGYCK 300

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYSRYLTG++ GE P TL +Y PED ++F+DESH+++PQI+GMY+GD  RK +L + 
Sbjct: 301 GVENYSRYLTGKSEGEAPDTLIDYFPEDLVVFLDESHISVPQINGMYKGDRARKQSLIDN 360

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+    P  + +SATP  +ELE   G +VEQ++RPTG+V+P ++
Sbjct: 361 GFRLPSAYDNRPLKFEEFFGKIPQVVYISATPSDYELEHSNGEVVEQLVRPTGIVEPSID 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+ DEI     +  RIL+T LTK+MAE+LT+Y  E  I+V+YMHS++ TLE
Sbjct: 421 IRETKNQIDDLMDEIKTRTARKERILVTTLTKKMAEELTDYYLEYGIKVKYMHSDIDTLE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIR LR G+FDVLVGINLLREGLDIPE  LVAIL+ADKEG+LRS+ SLIQT+GRAAR
Sbjct: 481 RTEIIRGLRKGEFDVLVGINLLREGLDIPEVSLVAILEADKEGYLRSRRSLIQTMGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV   VILYAD IT S+Q AIDE  RRRE Q ++N ++NINP+S+  +I E I    +E 
Sbjct: 541 NVEGHVILYADRITGSMQEAIDEVNRRREVQEKYNLENNINPKSIVREIAESIVDYEIEK 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
               N +I   +   S+K  +  +K L KQ+   A+ LNFEEA ++RD++  LK 
Sbjct: 601 ENEANKAI---KQYKSEKDIEKEIKKLDKQIKKLAEELNFEEAIKLRDKMNELKK 652


>gi|282878379|ref|ZP_06287171.1| excinuclease ABC, B subunit [Prevotella buccalis ATCC 35310]
 gi|281299565|gb|EFA91942.1| excinuclease ABC, B subunit [Prevotella buccalis ATCC 35310]
          Length = 678

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/672 (48%), Positives = 460/672 (68%), Gaps = 18/672 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL  GIH  +  Q+LLGVTGSGKTFT+A VI  +Q P ++++
Sbjct: 3   FKLTSKYKPTGDQPEAIQQLTDGIHRGDPAQVLLGVTGSGKTFTVANVINNVQMPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TD YIEK+ +IN++IDR+R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPENAVEYYVSYYDYYQPEAYLPTTDLYIEKDLAINDEIDRLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  +LL  R D IVVSSVSCIYG+G   + +  I+ +K G+ +++ + L  LV+  Y R
Sbjct: 123 SAVSALLSGRKDVIVVSSVSCIYGMGGPSAMTNSIITVKKGERLDRNDFLRKLVEALYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++  ++  R++ +  +I+ I E   +T  +++  E   I
Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYSNNI-LRITWWDEEIDSIEEVDSVTFHRLQEFEEYHI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  ++      G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTTKEQTEHAIRAIQDDLVKQVDYFNDLGDTIKAQRIKERVEYDIEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G+ P  L ++ P+D LL VDESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGREAGQRPYCLLDFFPQDFLLVVDESHVSVPQISAMYGGDRARKQNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE++ +   TI VSATP  +EL++ +G++VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLRFEEFHDMLHQTIYVSATPADYELQEAEGVVVEQIIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ DEI    ++  R+L+T LTKRMAE+LTEYL   ++R  Y+HS+V TL
Sbjct: 422 DVRPSENQIDDLLDEILQRTEREERVLVTTLTKRMAEELTEYLLNHDVRANYIHSDVATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIMTDLRAGVFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI+YADTIT+S+Q  IDET RRR  QL++N++H+I PQ + ++I   +      
Sbjct: 542 RNVNGKVIMYADTITESMQRTIDETARRRSIQLKYNEEHHITPQQIVKEIKNALPTSKEN 601

Query: 740 ----------------DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
                           +A +   + D   L +++++ +  + +    M  AA +L+F +A
Sbjct: 602 EKDWRYPTLAAQQAYMEAESGAFAADPIVLRMTREQLEKSIANTTALMKQAAKDLDFLQA 661

Query: 784 ARIRDEIKRLKS 795
           A+ RDEI RL++
Sbjct: 662 AQYRDEIVRLQA 673


>gi|225163534|ref|ZP_03725846.1| excinuclease ABC, B subunit [Opitutaceae bacterium TAV2]
 gi|224801873|gb|EEG20157.1| excinuclease ABC, B subunit [Opitutaceae bacterium TAV2]
          Length = 686

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/662 (52%), Positives = 453/662 (68%), Gaps = 9/662 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++  DY P+GDQP AI  L+  I +  K Q LLGVTGSGKTFTMA VI    RP +++
Sbjct: 2   LFKLHADYQPTGDQPQAIEALVNSIQAGNKHQTLLGVTGSGKTFTMANVIARCDRPTLII 61

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAY+  +DTYIEK+SSINE+I+R+R
Sbjct: 62  SHNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYIAASDTYIEKDSSINEEIERLR 121

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA  SL+ R D IVV+SVSCIYG+GS E +  M +QL+ GD+  +  LL+ LV+  Y+R
Sbjct: 122 ISAASSLVSRRDVIVVASVSCIYGLGSPEDFQAMRIQLRRGDAFGRNVLLTRLVENLYER 181

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D  + RG FRV GD ++I P++LE    RV  +G++IE +SEF PLTG  IR +E   +
Sbjct: 182 NDYDLKRGAFRVRGDVVDIMPAYLE-QGLRVEFWGDEIEAMSEFDPLTGNVIRALEQFDL 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + YVT +  L+ A+  I+ EL  R+   E+EG+ LEAQR+  R  YDLEML+  G C
Sbjct: 241 YPANQYVTSKDKLDAALSAIRTELDERVAFFEREGKYLEAQRIRMRTNYDLEMLQEMGFC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L GR  G+ P  L ++  +D LL +DESH T+PQI GMY GD  RK  L  
Sbjct: 301 NGIENYSRHLAGRAAGDRPICLVDFFLKDFLLMIDESHATVPQIGGMYNGDQARKQNLVS 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRP  F E+  +   T+ VSATP  +ELE+   ++ EQ+IRPTGL+DP +
Sbjct: 361 FGFRLPSALDNRPQSFAEFVSITGQTLYVSATPAKYELEKS-TVVAEQVIRPTGLLDPGI 419

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           +IR+ + QVE++  E   A + G R+L+T LTKR++EDLT +L E  IRV Y+HS++  +
Sbjct: 420 DIRTTKGQVENLIAEARRAVEAGERVLVTTLTKRLSEDLTAFLRESKIRVEYLHSDIDAI 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+R+LR G FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT GRAA
Sbjct: 480 ERVEILRNLRQGNFDVLVGINLLREGLDLPEVALVAILDADKEGFLRSETSLIQTAGRAA 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736
           R+   +VI YAD IT SI+  ++ T  RREKQL +N +H I P+SVK      +   D  
Sbjct: 540 RHEKGRVIFYADNITDSIRRTLEVTRVRREKQLAYNAEHGITPRSVKRAQQSSLHVYDGS 599

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            + D    N+S+ A+          A +  L  +M LA+  L FE AA +RD+I  L+S 
Sbjct: 600 GVRDTDDANVSMVAEGDG----DVSAVIAELEDEMTLASSQLEFERAAVLRDQITALRSG 655

Query: 797 PY 798
            Y
Sbjct: 656 DY 657


>gi|295083906|emb|CBK65429.1| Excinuclease ABC subunit B [Bacteroides xylanisolvens XB1A]
          Length = 676

 Score =  781 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/667 (49%), Positives = 462/667 (69%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   YELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   + + +++++ G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMMDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV+ +G++I+ I E  P+TG  I   +  KI
Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPITGVTIAPFDAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFQEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+L EYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGIYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE----------KI 729
           RNVN KVI+YAD +T S++L IDET RRREKQL +N+ + I PQ +K+          K 
Sbjct: 542 RNVNGKVIMYADRMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNAKE 601

Query: 730 MEVI--DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
            + +  +     + +T NI+ D     +SK + +  ++  RK M  AA  L F EAA+ R
Sbjct: 602 ADELLKERHAYVEPSTPNIAADPVVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQYR 661

Query: 788 DEIKRLK 794
           DE+ +L+
Sbjct: 662 DELLKLE 668


>gi|288799999|ref|ZP_06405458.1| excinuclease ABC subunit B [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288333247|gb|EFC71726.1| excinuclease ABC subunit B [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 678

 Score =  781 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/675 (48%), Positives = 470/675 (69%), Gaps = 16/675 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL  GI + +  Q+LLGVTGSGKTFT+A  I  +++P ++++
Sbjct: 3   FKITSKYKPTGDQPEAIKQLTDGILAGDTAQVLLGVTGSGKTFTIANTIANVKKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +INE ID++R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPKNAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINEDIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  +LL  R D I+VSSVSCIYG+G   +  + I+ ++ G+ +++ + L  LV   Y R
Sbjct: 123 SAVSALLSGRQDVIIVSSVSCIYGMGGPSAMGESIINIQQGEQLDRNDFLRKLVDALYTR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RGTFRV G++I++F ++  D   R++ +  ++E I E   +T ++I +  + +I
Sbjct: 183 NDIDLTRGTFRVKGETIDVFMAYS-DHILRITWWDEEVESIEELDSVTFKRIASFTSYQI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +  +N A+++I+++L  ++   E  G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANIFVTSKDQVNDAIRHIQDDLTDQIAFFESVGDTIKAQRIKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR+PGE P  L ++ P+D LL VDESHVTIPQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRSPGERPYCLLDFFPQDFLLVVDESHVTIPQIRAMYGGDRARKQNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLP+  DNRPLRFEE++ +    I VSATP  +ELE+  G+IVEQIIRPTGL+DP +
Sbjct: 362 FGFRLPAAFDNRPLRFEEFHEMVNQAIYVSATPADYELEESDGVIVEQIIRPTGLLDPLI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R +  Q++D+ DEI    ++  RIL+T LTKRMAE+LT+YL    ++  Y+HS+V TL
Sbjct: 422 IVRPSENQIDDLMDEIIECTKREERILVTTLTKRMAEELTDYLINNGVKTSYIHSDVATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+  LR G+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIMNGLRSGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RNVN KVI+YADTIT+S+Q  IDET RRR  Q+++N++H+I PQ +++ I  ++      
Sbjct: 542 RNVNGKVIMYADTITESMQKTIDETERRRLIQMKYNEEHHITPQQIQKSIKSLLTNDTTN 601

Query: 734 -----DPILLEDAATTN---ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
                D  + E+  ++N   ++ D   + +SK++ +  ++   + M  AA +L+F +AA+
Sbjct: 602 NNTTKDYSISENELSSNKVMLAADEIVVKMSKEQLRKSIQYTTEMMKQAAKDLDFLQAAQ 661

Query: 786 IRDEIKRLKSSPYFQ 800
            RDEI +L+     +
Sbjct: 662 YRDEILKLQEQLELK 676


>gi|288927579|ref|ZP_06421426.1| excinuclease ABC subunit B [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330413|gb|EFC68997.1| excinuclease ABC subunit B [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 685

 Score =  781 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/676 (46%), Positives = 448/676 (66%), Gaps = 17/676 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL +G+   +K Q+LLGVTGSGKTFTMA VI     P +V++
Sbjct: 11  FKLTSKYKPTGDQPEAIKQLTEGLERGDKAQVLLGVTGSGKTFTMANVIAQHNVPTLVLS 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 71  HNKTLAAQLYEEMKGFFPNNAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDEIDKLRL 130

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            A  +LL  R D +VVSSVSCIYG+G   +    I+ L  G  +++ E L  LV   Y R
Sbjct: 131 RAVSALLSGRKDVVVVSSVSCIYGMGGPTAMESGIISLSKGQRIDRNEFLRKLVDSLYVR 190

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD++++  ++ +++  R++ + ++I+ I E   LT  +I      KI
Sbjct: 191 NDIDLQRGNFRVKGDTVDVAMAYSDNL-LRITWWDDEIDSIEEVDSLTYHRIERFNDYKI 249

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  ++    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 250 YPANLFVTTKDQTEHAIRCIQDDLVKQIDFFNELGDGIKAQRIKERVEYDMEMMKELGHC 309

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PG+ P  L ++ P+D L+ +DESHV++PQ+ GMY GD  RK  L E
Sbjct: 310 SGIENYSRYFDGRQPGQRPYCLLDFFPKDYLMIIDESHVSVPQLGGMYGGDRARKQNLVE 369

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLP+  DNRPLRFEE++ L    I VSATP  +EL + +G++VEQ+IRPTGL+DP +
Sbjct: 370 FGFRLPAAFDNRPLRFEEFHNLINQVIYVSATPADYELGEAEGVVVEQLIRPTGLLDPEI 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R +  Q++D+  EI   + +  R+L+T LTKRMAE+LTEYL +  ++  Y+HS+V TL
Sbjct: 430 VVRPSENQIDDLLAEILERSDKNERVLVTTLTKRMAEELTEYLLDHGVKTNYIHSDVATL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+ I+  LR G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 490 DRVRIMNALRAGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RNVN KVI+YADTIT+S+Q  IDET RRR  Q+++N +H+I PQ + + I   +      
Sbjct: 550 RNVNGKVIMYADTITQSMQRTIDETARRRTIQMQYNAEHHITPQQIVKDIKGALTGNTTT 609

Query: 734 ---------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
                          +      + D     +++++ +  + +    M  AA  L+F +AA
Sbjct: 610 VETAKGYRSQAGGYVEPDAVAFAADPIVERMTRQQLEKSIANTTALMKQAAKELDFIQAA 669

Query: 785 RIRDEIKRLKSSPYFQ 800
           + RDEI RL+     +
Sbjct: 670 QYRDEIARLQEQLELK 685


>gi|302346857|ref|YP_003815155.1| excinuclease ABC, B subunit [Prevotella melaninogenica ATCC 25845]
 gi|302150443|gb|ADK96704.1| excinuclease ABC, B subunit [Prevotella melaninogenica ATCC 25845]
          Length = 681

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/680 (47%), Positives = 455/680 (66%), Gaps = 21/680 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L  G+   +K Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FKLTSKYKPTGDQPEAIRELTDGLERGDKSQVLLGVTGSGKTFTVANVIANVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKAFFPDNAVEYYVSYYDYYQPEAYMPVTDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  SLL  R D IVVSSVSCIYG+G+  +    ++ +K G  +++ + L  LV   Y R
Sbjct: 123 SAVSSLLSGRKDVIVVSSVSCIYGMGAPIAMKGNVISIKKGQVIDRNDFLRRLVDALYMR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++ ++V  R++ + ++I+ I E   +   ++   +  +I
Sbjct: 183 NDIELQRGNFRVKGDTVDIAMAYNDNV-LRITWWDDEIDSIEEVDAVDFHRLATFDAYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  ++    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTEGAIRQIQDDLVKQVDFFTEIGDNIKAQRIKERVEYDIEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ PED L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGREAGMRPYCLLDFFPEDYLMVIDESHVSVPQISAMYGGDRARKKNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE++ L    I VSATP  +EL + +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLRFEEFHDLIHQIIYVSATPADFELAESEGVVVEQVIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI + A++  R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V +L
Sbjct: 422 EVRPSENQIDDLMNEIVIRAEKEERVLVTTLTKRMAEELTEYLLNHDIRTAYIHSDVASL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +RI+II DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRIKIINDLRAGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RNVN KVI+YAD IT+S+Q  IDET RRR KQL++N+++NI P  + + I   +      
Sbjct: 542 RNVNGKVIMYADNITESMQKTIDETMRRRTKQLKYNEENNITPTQIVKAIKGTLPVGGES 601

Query: 734 -------------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
                            +E       + D     +SK + +  + +    M  AA +L+F
Sbjct: 602 NLTAETASIGRNVGQAYVEPNNGVLFAADPIVAKMSKAQLEKSIANTTILMKQAAKDLDF 661

Query: 781 EEAARIRDEIKRLKSSPYFQ 800
            +AA+ RDEI RL+     +
Sbjct: 662 LQAAQYRDEIIRLQKELEGK 681


>gi|307718238|ref|YP_003873770.1| UvrABC system protein B [Spirochaeta thermophila DSM 6192]
 gi|306531963|gb|ADN01497.1| UvrABC system protein B [Spirochaeta thermophila DSM 6192]
          Length = 661

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/661 (51%), Positives = 467/661 (70%), Gaps = 5/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F+++  + P+GDQ  AIA L +G+    + Q L GVTGSGKTFTMAK++E +Q P +
Sbjct: 1   MSGFRVEAPFGPAGDQGKAIALLSEGVKKGYRYQTLKGVTGSGKTFTMAKIVEEVQLPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYV   D YIEK++SINE+IDR
Sbjct: 61  VISHNKTLAAQLYREFKEFFPHNAVEYFVSYYDYYQPEAYVASKDLYIEKDASINEEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SL+ER D IVV++VSCIYG+G+ E + +M V++ +G  ++   L   LV  QY
Sbjct: 121 LRLSATASLMERPDVIVVATVSCIYGLGNPEHFREMRVRIDVGQHLDLGMLKQQLVSLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D  + RGTFRV G+ ++I+P++LE V +RV +  +++  I   +PLT + +   +++
Sbjct: 181 ERNDAVLTRGTFRVRGEVVDIYPAYLEHV-YRVELDWDEVVSIKVVHPLTLEVLDERKSL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+V P   + +A++ I+EEL+ R  EL  + +L+EAQRL+ R  YDLEMLE  G
Sbjct: 240 FVYPAKHFVLPEEQIRSAIQGIREELEERYRELLSQNKLVEAQRLKARTEYDLEMLEEMG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L+GR PG+ P  L +Y P+  L+F+DESHVT+PQ+  MY GD  RK +L
Sbjct: 300 YCSGIENYSRHLSGRKPGQRPAVLLDYFPDRFLVFIDESHVTLPQLKAMYEGDRSRKLSL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPLR+EE+  + P  I VSATP   EL +    +VEQIIRPTGL+DP
Sbjct: 360 VEYGFRLPSALDNRPLRYEEFEAIVPQVIYVSATPEEEELSKS-SQVVEQIIRPTGLLDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q++D+Y EI    ++G R+L+T LTK+MAEDLT+YL    +RVRY+H+EV+
Sbjct: 419 EVEVRPTEGQIDDLYAEIRKRVEKGQRVLVTTLTKKMAEDLTDYLQSLGLRVRYLHAEVE 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+E++RDLR G+FDVLVGINLLREGLD+PE  LVAILDADK GFLRS TSLIQ +GR
Sbjct: 479 TIERVELLRDLRAGEFDVLVGINLLREGLDLPEVALVAILDADKIGFLRSATSLIQIMGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   KVI+YAD +T +++ AI+ET RRR  Q  +N++H I PQ++++ + ++++  +
Sbjct: 539 AARNAEGKVIMYADRVTDAMREAIEETRRRRTIQEAYNREHGITPQTIQKSVRDILERKM 598

Query: 738 LEDAATTNISIDA---QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                     I+        L   + K  ++ L K+M   A NL FE AA IRDEI RLK
Sbjct: 599 KVKEEVERKEIEVLVHGYNILVPSERKKLIQRLEKEMLERAKNLEFEMAAVIRDEIARLK 658

Query: 795 S 795
            
Sbjct: 659 E 659


>gi|150024988|ref|YP_001295814.1| excinuclease ABC subunit B [Flavobacterium psychrophilum JIP02/86]
 gi|149771529|emb|CAL42998.1| Excinuclease ABC, B subunit [Flavobacterium psychrophilum JIP02/86]
          Length = 663

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/662 (52%), Positives = 469/662 (70%), Gaps = 6/662 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+Q+DY P GDQP AI +L++GI   EK Q LLGVTGSGKTFT+A VI+ +QRP +V+A
Sbjct: 3   FQVQSDYKPKGDQPQAIEKLVQGITDNEKYQTLLGVTGSGKTFTVANVIQEVQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEA++P T  +IEK+ SINE++++MR 
Sbjct: 63  HNKTLAAQLYSEFKQFFPNNAVEYFVSYYDYYQPEAFMPVTGVFIEKDLSINEELEKMRM 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S   SLL  R D IV+SSVSC+YGIG+   + + ++ ++ G  + + +LL  LV+  Y R
Sbjct: 123 STVSSLLSGRRDIIVISSVSCLYGIGNPVEFQKNVIPIEKGQIISRTKLLHQLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++  + G FR+ GD+++I+PS+ +D A+R+  FG++IEEI  F   T Q I   E + I
Sbjct: 183 TEMDFMPGNFRIKGDTVDIYPSYADD-AFRIHFFGDEIEEIESFDVKTTQVIEKFEKLTI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+++L  ++   ++ G+ LEA+RLE+R  +DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLQNAIWEIQQDLVKQVDYFKEIGKHLEAKRLEERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR+ G  P  L +Y P+D L+ VDESHVT+ Q+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGRSTGTRPFCLLDYFPKDYLMVVDESHVTLSQVHAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  ++   I VSATP  +EL++  G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEAMQNQVIYVSATPADYELQKTDGVVVEQVIRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR +  Q++D+ +EI + A+   R+L+T LTKRMAE+L +YL + NIR RY+HSEV TL
Sbjct: 422 EIRPSLNQIDDLIEEIQVRAEIDERVLVTTLTKRMAEELAKYLTKVNIRCRYIHSEVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEI++DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QTIGRAA
Sbjct: 482 ERIEIMQDLRKGIFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N K I+YAD IT S+Q  IDET  RREKQ+  N  +NI PQ++ +KI        L 
Sbjct: 542 RNLNGKAIMYADKITASMQKTIDETNYRREKQINFNIANNIIPQALNKKIESAFTKNTLV 601

Query: 740 DAA----TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           D+     + N++ + +   LSK + +  ++  RK M  AA +L+F +AA++RDEIK L+ 
Sbjct: 602 DSELGYTSGNMAAEPETEYLSKPEIEKRIRDKRKAMEKAAKDLDFMQAAKLRDEIKDLQE 661

Query: 796 SP 797
             
Sbjct: 662 KI 663


>gi|325971742|ref|YP_004247933.1| UvrABC system protein B [Spirochaeta sp. Buddy]
 gi|324026980|gb|ADY13739.1| UvrABC system protein B [Spirochaeta sp. Buddy]
          Length = 689

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/689 (47%), Positives = 454/689 (65%), Gaps = 9/689 (1%)

Query: 117 LKNGKIWTPHRSWSINNHSKDIT----FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQL 172
           ++  K+       SI N   D++     F++ + Y PSGDQ  AI +L  G+   +  Q 
Sbjct: 1   MEEMKVDERWGGESITNVHGDVSFQNKPFRVVSAYDPSGDQAQAIEKLSAGLVQGDVYQT 60

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L GVTGSGKT+TMAK+IE +QRP +V++ NK LAAQLY EFK+FFP NAVEYFVS YDYY
Sbjct: 61  LKGVTGSGKTYTMAKIIEQVQRPTLVLSHNKTLAAQLYREFKSFFPDNAVEYFVSTYDYY 120

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           QPEAYVP  D YIEK++ IN +IDR+R SA+ SL+ER D IVV++VSCI+G+ +  S   
Sbjct: 121 QPEAYVPGKDLYIEKDADINVEIDRLRLSASFSLMERRDVIVVATVSCIFGLANPVSVRD 180

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
           M+     GD  E  ++L  LV+ QY+R D  + RG FRV GD IEI PS+LE+ A R+S+
Sbjct: 181 MVHTFTKGDQFEHHDVLEKLVRMQYERNDAILKRGAFRVKGDIIEICPSYLEN-AVRISI 239

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
             ++I  I  F P++G+K   V++  +Y    +V P   +  A+  I+ E++ ++     
Sbjct: 240 DWDEIASIQWFDPVSGEKQEMVDSYTLYPAKQFVMPPEQVKAAIGKIRSEMEDQVEYFNS 299

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
            G+ LEA+R++ R+ YDLEMLE  G C  IENYSR L+ R  GE P  L +Y P D + F
Sbjct: 300 MGKPLEAERIKTRVEYDLEMLEEIGYCSGIENYSRPLSDRKVGERPAVLLDYFPPDFVTF 359

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           +DESHVT+PQ+  MY GD  RK  L  YGFRLPS +DNRPL+  E+  +    I VSATP
Sbjct: 360 IDESHVTLPQVGAMYEGDRSRKLNLVNYGFRLPSALDNRPLKAVEFEQVVQQRIYVSATP 419

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
           G  EL      IVEQ+IRPTGL+DP +E+RS+  Q+E++Y EI     +  R+L+T LTK
Sbjct: 420 GKTELGLS-SQIVEQVIRPTGLLDPQIEVRSSEGQMENLYGEIRSVIAKKQRVLVTTLTK 478

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           +M+EDLT+Y     ++VRY+HSE+ T+ER+EI+RDLRLG FD+LVGINLLREGLD+PE  
Sbjct: 479 KMSEDLTDYFASLGLKVRYLHSEIDTIERVEILRDLRLGVFDILVGINLLREGLDLPEVS 538

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           L+AILDADK GFLRS TSLIQ IGRAARN   +VI+YAD ++ +++ +I ET RRR  Q 
Sbjct: 539 LIAILDADKIGFLRSTTSLIQIIGRAARNSEGRVIMYADRMSSAMEESIGETNRRRAIQT 598

Query: 713 EHNKKHNINPQSVKEKIMEVID---PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRK 769
            +N++H I P ++ + + ++++    +  E        + +     +    K ++K+L K
Sbjct: 599 AYNEEHGITPTTIVKAVQDILEREREVTKEIQKQDLTILKSGYNLFNANDRKKYVKALEK 658

Query: 770 QMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           +M  AA NL FE AA IRDEI  ++   +
Sbjct: 659 EMLEAAKNLEFERAAIIRDEIAAIREGQF 687


>gi|256371800|ref|YP_003109624.1| excinuclease ABC, B subunit [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008384|gb|ACU53951.1| excinuclease ABC, B subunit [Acidimicrobium ferrooxidans DSM 10331]
          Length = 667

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/657 (52%), Positives = 459/657 (69%), Gaps = 4/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y PSGDQP AI +L+  I S  +   LLG+TGSGK+ T+A  IE +QRP +V+A
Sbjct: 5   FEVHAPYRPSGDQPRAIDELVTSIESGNRFTTLLGITGSGKSATIAWTIERLQRPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +EF+ F P N VEYFVSYYDYYQPEAY+P +DTYIEK+SSIN++IDR+RH
Sbjct: 65  PNKSLAAQLANEFRGFMPRNRVEYFVSYYDYYQPEAYIPSSDTYIEKDSSINDEIDRLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+GS  +Y   I+ +++G       ++  LV  QY+R 
Sbjct: 125 SATSALLTRRDVVVVASVSCIYGLGSPSAYEGQILPIEVGMDQPMGLVVRRLVAMQYQRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ + RG FRV GD +E+ P++ E+   RV  FG+++E I      TG+ +R +E I ++
Sbjct: 185 DLELARGRFRVRGDVLEVHPAY-EERIVRVEFFGDEVERIVSVDQTTGEVLRELEDIVLF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY+     +  A++ I +EL  RL ELE  G+LLEAQRL  R   DLEML+  G C 
Sbjct: 244 PATHYLASPEVVERALRSISDELGERLRELESAGKLLEAQRLRMRTELDLEMLQEVGYCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR PG+ P TL +Y P+D L+ +DESHV +PQ+   Y GD  RK TL E+
Sbjct: 304 GIENYSRHLDGREPGQAPYTLLDYFPKDFLVVIDESHVGLPQLRAQYAGDRSRKETLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF+E+    P  I +SATPG +E E   G  VE I+RPTGL+DP VE
Sbjct: 364 GFRLPSALDNRPLRFDEFLERVPQAIFMSATPGPFEREHA-GRTVELIVRPTGLLDPKVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+  EI    ++  R+L+T LTKRMAEDLTEY     +RVRY+HS ++TLE
Sbjct: 423 VRPTKGQIDDLLAEIRARVERDQRVLVTTLTKRMAEDLTEYFEGLGVRVRYLHSTIETLE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEI+RDLRLG FDVLVGINLLREGLD+PE GLVAI+DADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RIEIVRDLRLGVFDVLVGINLLREGLDLPEVGLVAIMDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV   VILYAD +T S+  AI ET RRR  Q ++N +H I P+SV  +I +++       
Sbjct: 543 NVEGTVILYADAVTPSMARAISETERRRSIQADYNARHGITPRSVSARIDDLVTERTRSA 602

Query: 741 AATT--NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              T    +I+ +   ++ ++ +  + SLR++M  AA  L FEEAA++RD+I+ L++
Sbjct: 603 PTPTLGRRAIEERTAGMNPEQVRDVIDSLREEMERAATELRFEEAAKLRDDIRALEA 659


>gi|262038457|ref|ZP_06011831.1| excinuclease ABC, B subunit [Leptotrichia goodfellowii F0264]
 gi|261747552|gb|EEY35017.1| excinuclease ABC, B subunit [Leptotrichia goodfellowii F0264]
          Length = 662

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/660 (51%), Positives = 480/660 (72%), Gaps = 5/660 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    F++ + + P+GDQP AI ++++ I +    Q+LLGVTGSGKTFT+A VIE + RP
Sbjct: 3   EGKMDFKIHSKFQPTGDQPQAIDKIVENIENGITDQILLGVTGSGKTFTVANVIERINRP 62

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
           A++MAPNK LAAQLY+E+K FFP NAVEYFVSYYDYYQPEAY+ +TDTYIEK+SS+N++I
Sbjct: 63  ALIMAPNKTLAAQLYNEYKQFFPENAVEYFVSYYDYYQPEAYIMQTDTYIEKDSSVNDEI 122

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RH+AT +LL R D I+V+SVS IYG+GS E+Y +  + + +    ++ EL+  L+  
Sbjct: 123 DKLRHAATAALLNRRDVIIVASVSAIYGLGSPEAYKKRSIPIDVSTGFDRNELIKRLISL 182

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           +Y+R DI   RG FRV GD +++ PS+ +D  +R   FG+D+E I+E   LTGQKIR ++
Sbjct: 183 RYERNDIAFERGKFRVKGDVLDLHPSY-QDTGYRFEFFGDDLESIAEINTLTGQKIREIQ 241

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + I   +HY++   +     + IK EL  R+   E++ +LLEAQR++QR  YDLEM+  
Sbjct: 242 RLTIMPATHYLSTEDS-EKMFESIKSELHDRINFFERQNKLLEAQRIKQRTEYDLEMIAE 300

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C+ +ENYSRYLTG+N GE P TL +Y P+D ++F+DESH+++PQI+GMY+GD  RK 
Sbjct: 301 IGYCKGVENYSRYLTGKNEGEAPDTLIDYFPDDMVVFLDESHISVPQINGMYKGDRARKE 360

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           +L   GFRLPS  DNRPL+FEE+    P  + +SATP  +ELEQ +  I+EQ++RPTG+V
Sbjct: 361 SLVNNGFRLPSAFDNRPLKFEEFFAKVPQVVYISATPSDYELEQSKEEIIEQLVRPTGIV 420

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           +P +EIR  + Q++D+ DEI +   +  R+L+T LTK+MAE+LT+Y  E  I+V+YMHS+
Sbjct: 421 EPDIEIRPTKNQIDDLMDEIKIRTAKKERVLVTTLTKKMAEELTDYYLEFGIKVKYMHSD 480

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + TLER EIIR LR G+FDVLVGINLLREGLDIPE  LVAIL+ADKEG+LRS+ SLIQT+
Sbjct: 481 IDTLERTEIIRGLRKGEFDVLVGINLLREGLDIPEVSLVAILEADKEGYLRSRRSLIQTM 540

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNVN +VILYADT+T S++ AIDE  RRRE Q ++N  +NINP++++ +I E I  
Sbjct: 541 GRAARNVNGQVILYADTVTGSMKEAIDEVNRRREVQEKYNIDNNINPRTIEREIAESIVD 600

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             +    + +     ++   ++ + +  +K L K++  AA+ LNFEEA ++RD++  LK 
Sbjct: 601 YEIIKEDSVD---KVKKDYKNQAEIEKEIKRLNKEIKKAAEELNFEEAIKLRDKMNELKK 657


>gi|56417238|ref|YP_154312.1| excinuclease ABC subunit B [Anaplasma marginale str. St. Maries]
 gi|81821246|sp|Q5P9H3|UVRB_ANAMM RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|56388470|gb|AAV87057.1| excinuclease ABC subunit B [Anaplasma marginale str. St. Maries]
          Length = 651

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/656 (53%), Positives = 475/656 (72%), Gaps = 8/656 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++++PSGDQP AI  L++GI    K Q LLGVTGSGKTFTMA VIE  QRPAI
Sbjct: 1   MQRFKISSEFNPSGDQPGAIDSLVRGISCGAKEQTLLGVTGSGKTFTMASVIEQTQRPAI 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL+ E ++FFP NAVEYFVSYYDYYQPEAY+P++D YIEK++ IN++ID 
Sbjct: 61  IIAHNKTLAAQLHEEMRSFFPENAVEYFVSYYDYYQPEAYIPQSDVYIEKDALINDKIDL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSLLER D +VV+SVSCIYG+GS E YS+M V + +G  ++  +L   LV+ QY
Sbjct: 121 LRHSATRSLLERRDVVVVASVSCIYGLGSPELYSEMTVPIALGMKLDMCQLQERLVELQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           K  +    RG F V GD + +FPSH ED  W++S FG++++ I E  P +G     +E I
Sbjct: 181 KHGNR-YERGNFSVQGDVLSVFPSHYEDRIWKISFFGDEVDSIQEVDPKSGMVTLKLEKI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           KI+ NSHYVTPRPTL  A+  I++EL    ++ ++  +++EA R+ +R  +D+EM+  TG
Sbjct: 240 KIFPNSHYVTPRPTLLQAISEIEKELDECALQFKQCNKIVEADRIVERTRFDIEMMRETG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           +C+ IENYSRYL G+  G+PP TL +Y+P+D+++F+DESH+T+PQI  MY GD  RKA L
Sbjct: 300 TCKGIENYSRYLCGKEAGDPPNTLLDYLPQDAIMFIDESHMTVPQIRAMYNGDRMRKANL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             +GFR+PS +DNRPL F EW   +PT + VSATPG +EL+Q  G+  EQ+IRPTGL+DP
Sbjct: 360 INHGFRMPSALDNRPLTFAEWEDRKPTVVYVSATPGQYELQQTGGVATEQLIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              ++ A  Q+ DV  E      +G R+L+T LTK+MAE+LTEY+ E  I+V Y+HS+VK
Sbjct: 420 VCIVKGADGQIHDVMCESQATIARGYRVLITTLTKKMAENLTEYMREMGIKVAYLHSDVK 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEII DLRLG  DVLVG+NL+REGLDIPEC LV ILDADKEGFLRS TSLIQTIGR
Sbjct: 480 TLERIEIISDLRLGVIDVLVGVNLMREGLDIPECALVGILDADKEGFLRSTTSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VILYA+ ITKS++ A++ET RRR+ Q ++N++H+I P+++++ +   +   +
Sbjct: 540 AARNVEGRVILYANVITKSMRTAMEETDRRRDIQRKYNQEHSIVPRTIQKPVQTSLSERV 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                  +   +    +         +  L+K+M L A+NL+FE A  IR+EIKRL
Sbjct: 600 GSSRKKVSRDTNTDPANRD-------IVELQKEMLLCAENLDFERAVEIRNEIKRL 648


>gi|222475602|ref|YP_002564019.1| excinuclease ABC subunit B (uvrB) [Anaplasma marginale str.
           Florida]
 gi|255004725|ref|ZP_05279526.1| excinuclease ABC subunit B [Anaplasma marginale str. Virginia]
 gi|254764898|sp|B9KH59|UVRB_ANAMF RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|222419740|gb|ACM49763.1| excinuclease ABC subunit B (uvrB) [Anaplasma marginale str.
           Florida]
          Length = 651

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/656 (53%), Positives = 476/656 (72%), Gaps = 8/656 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++++PSGDQP AI  L++GI    K Q LLGVTGSGKTFTMA VIE  QRPAI
Sbjct: 1   MQRFKISSEFNPSGDQPGAIDSLVRGISCGAKEQTLLGVTGSGKTFTMASVIEQTQRPAI 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL+ E ++FFP NAVEYFVSYYDYYQPEAY+P++D YIEK++ IN++ID 
Sbjct: 61  IIAHNKTLAAQLHEEMRSFFPENAVEYFVSYYDYYQPEAYIPQSDVYIEKDALINDKIDL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSLLER D +VV+SVSCIYG+GS E YS+M V + +G  ++  +L   LV+ QY
Sbjct: 121 LRHSATRSLLERRDVVVVASVSCIYGLGSPELYSEMTVPIALGMKLDMCQLQERLVELQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           K  +    RG+F V GD + +FPSH ED  W++S FG++++ I E  P +G     +E I
Sbjct: 181 KHGNR-YERGSFSVQGDVLSVFPSHYEDRIWKISFFGDEVDSIQEVDPKSGMVTLKLEKI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           KI+ NSHYVTPRPTL  A+  I++EL    ++ ++  +++EA R+ +R  +D+EM+  TG
Sbjct: 240 KIFPNSHYVTPRPTLLQAISEIEKELDECALQFKQCNKIVEADRIVERTRFDIEMMRETG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           +C+ IENYSRYL G+  G+PP TL +Y+P+D+++F+DESH+T+PQI  MY GD  RKA L
Sbjct: 300 TCKGIENYSRYLCGKEAGDPPNTLLDYLPQDAIMFIDESHMTVPQIRAMYNGDRMRKANL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             +GFR+PS +DNRPL F EW   +PT + VSATPG +EL+Q  G+  EQ+IRPTGL+DP
Sbjct: 360 INHGFRMPSALDNRPLTFAEWEDRKPTVVYVSATPGQYELQQTGGVATEQLIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              ++ A  Q+ DV  E      +G R+L+T LTK+MAE+LTEY+ E  I+V Y+HS+VK
Sbjct: 420 VCIVKGADGQIHDVMCESQATIARGYRVLITTLTKKMAENLTEYMREMGIKVAYLHSDVK 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEII DLRLG  DVLVG+NL+REGLDIPEC LV ILDADKEGFLRS TSLIQTIGR
Sbjct: 480 TLERIEIISDLRLGVIDVLVGVNLMREGLDIPECALVGILDADKEGFLRSTTSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VILYA+ ITKS++ A++ET RRR+ Q ++N++H+I P+++++ +   +   +
Sbjct: 540 AARNVEGRVILYANVITKSMRTAMEETDRRRDIQRKYNQEHSIVPRTIQKPVQTSLSERV 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                  +   +    +         +  L+K+M L A+NL+FE A  IR+EIKRL
Sbjct: 600 GSSRKKVSRDTNTDPANRD-------IVELQKEMLLCAENLDFERAVEIRNEIKRL 648


>gi|325270752|ref|ZP_08137343.1| excision endonuclease subunit UvrB [Prevotella multiformis DSM
           16608]
 gi|324986868|gb|EGC18860.1| excision endonuclease subunit UvrB [Prevotella multiformis DSM
           16608]
          Length = 696

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/677 (46%), Positives = 462/677 (68%), Gaps = 21/677 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L  G+   +K Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 18  FKLTSKYRPTGDQPEAIRELTDGLERGDKSQVLLGVTGSGKTFTVANVIADVNKPTLILS 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 78  HNKTLAAQLYEEMKGFFPDNAVEYYVSYYDYYQPEAYMPTTDTYIEKDLAINDEIDKLRL 137

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  SLL  R D IVVSSVSCIYG+G+  +  + ++ ++ G +V++ + L  LV   Y R
Sbjct: 138 SAVSSLLSGRKDVIVVSSVSCIYGMGAPVAMKENVIPVRKGQTVDRNDFLRRLVDALYMR 197

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++ ++V  R++ + ++I+ I E   +   +I + +  +I
Sbjct: 198 NDIDLQRGNFRVKGDTVDIAMAYNDNV-LRITWWDDEIDTIEEVDSVDFHRIASFDDYEI 256

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +    +A++ I+++L  ++   +  G  ++AQR+++R+ YD+EM++  G C
Sbjct: 257 YPANLFVTSKEQTESAIRQIQDDLVKQVDFFKGIGDNIKAQRIKERVEYDMEMIKELGHC 316

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G+ P  L ++ P+D L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 317 SGIENYSRYFDGRQAGQRPYCLLDFFPKDYLMVIDESHVSVPQISAMYGGDRARKTNLVE 376

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE++ L    I VSATP  +EL++ +G++VEQ+IRPTGL+DP +
Sbjct: 377 YGFRLPAAFDNRPLRFEEFHSLIHQVIYVSATPADYELKESEGVVVEQLIRPTGLLDPEI 436

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ +EI + A++  R+L+T LTKRMAE+LTEYL + +IR  Y+HS+V +L
Sbjct: 437 DVRPSENQIDDLMNEIVVRAEKEERVLVTTLTKRMAEELTEYLLDHDIRTAYIHSDVASL 496

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++II DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 497 DRVKIINDLRAGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 556

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP---- 735
           RNV+ KVI+YAD IT+S+Q  IDET RRR KQL++N++H+I P+ +   I   +      
Sbjct: 557 RNVHGKVIMYADNITESMQKTIDETIRRRTKQLKYNEEHHITPKQIVRAIKGTLPTGGEG 616

Query: 736 ---------------ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
                            +E       + D     +S+ + +  +++    M  AA NL+F
Sbjct: 617 NAAAPADSAARRTARAYVEPGDGMLFAADPVIAKMSRAQLEKSIENTTALMKQAAKNLDF 676

Query: 781 EEAARIRDEIKRLKSSP 797
            +AA+ RDEI RL+   
Sbjct: 677 LQAAQYRDEIIRLQKEL 693


>gi|237714491|ref|ZP_04544972.1| excinuclease ABC subunit B [Bacteroides sp. D1]
 gi|262406355|ref|ZP_06082904.1| excinuclease ABC, B subunit [Bacteroides sp. 2_1_22]
 gi|294643236|ref|ZP_06721062.1| excinuclease ABC, B subunit [Bacteroides ovatus SD CC 2a]
 gi|294806429|ref|ZP_06765270.1| excinuclease ABC, B subunit [Bacteroides xylanisolvens SD CC 1b]
 gi|229445260|gb|EEO51051.1| excinuclease ABC subunit B [Bacteroides sp. D1]
 gi|262355058|gb|EEZ04149.1| excinuclease ABC, B subunit [Bacteroides sp. 2_1_22]
 gi|292641359|gb|EFF59551.1| excinuclease ABC, B subunit [Bacteroides ovatus SD CC 2a]
 gi|294446292|gb|EFG14918.1| excinuclease ABC, B subunit [Bacteroides xylanisolvens SD CC 1b]
          Length = 676

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/667 (49%), Positives = 462/667 (69%), Gaps = 14/667 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   YELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   + + +++++ G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMMDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV+ +G++I+ + E  P+TG  I   +  KI
Sbjct: 183 NDIDLNRGNFRVKGDTVDIYLAYTDNL-LRVTFWGDEIDGVEEVDPITGVTIAPFDAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFQEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+L EYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGIYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE----------KI 729
           RNVN KVI+YAD +T S++L IDET RRREKQL +N+ + I PQ +K+          K 
Sbjct: 542 RNVNGKVIMYADRMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNAKE 601

Query: 730 MEVI--DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
            + +  +     + +T NI+ D     +SK + +  ++  RK M  AA  L F EAA+ R
Sbjct: 602 ADELLKERHAYVEPSTPNIAADPVVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQYR 661

Query: 788 DEIKRLK 794
           DE+ +L+
Sbjct: 662 DELLKLE 668


>gi|224024032|ref|ZP_03642398.1| hypothetical protein BACCOPRO_00749 [Bacteroides coprophilus DSM
           18228]
 gi|224017254|gb|EEF75266.1| hypothetical protein BACCOPRO_00749 [Bacteroides coprophilus DSM
           18228]
          Length = 677

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/669 (48%), Positives = 454/669 (67%), Gaps = 15/669 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++DY P+GDQP AIAQL  G+ +    Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELKSDYQPTGDQPEAIAQLTDGVLNGLPAQTLLGVTGSGKTFTIANVIRNVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYGEFKAFFPNNAVEYYVSYYDYYQPEAYLPSTDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D IVVSSVSCIYG+G+   +   +++++ G  +++  LL  LV   Y R
Sbjct: 123 AATSALLSGRKDVIVVSSVSCIYGMGNPADFYNNVIEVRRGKRMDRNVLLRQLVDSLYTR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D  + RG FRV GD+++IF ++  D   R+  + ++I+ I E  P TG +I   +  KI
Sbjct: 183 NDAELNRGNFRVKGDTVDIFLAYT-DHILRIMFWDDEIDGIEEVDPDTGARISTFDEYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T R +   A+  I+++L +++   E+ G+  EA+RL++R+TYD+EML   G C
Sbjct: 242 YPANLFMTTRESTLRAIHQIEDDLTLQVQHFEETGKFYEAKRLKERVTYDMEMLRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGREAGTRPYCLLDFFPKDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL F+E+  +    I VSATP  +EL++ +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLTFDEFREMARQVIYVSATPAEYELQESEGVVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI    +   R+L+T LTKRMAE+LT+YL    IR  Y+HS+V+TL
Sbjct: 422 EVRPSLNQIDDLMEEIQQRIEAQERVLVTTLTKRMAEELTDYLSRHGIRCTYIHSDVETL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ +LR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMEELRQGIFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI+YAD IT S++  IDET RRREKQL +N+ + I P+ ++     ++      
Sbjct: 542 RNVNGKVIMYADKITDSMRQTIDETNRRREKQLAYNEANGITPRQIRRSHTNILLENQEA 601

Query: 740 DAATTN-------------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
            A                 ++ D     +SK + K  +   RK M  AA  L+F EAA+ 
Sbjct: 602 KAGQGKKAKEYADMPDGLTMAADPIVEYMSKDQLKRSVDRTRKLMQEAARKLDFIEAAQY 661

Query: 787 RDEIKRLKS 795
           RDE+ RL+ 
Sbjct: 662 RDELIRLEE 670


>gi|330752228|emb|CBL87185.1| UvrABC system protein B [uncultured Sphingobacteria bacterium]
 gi|330752271|emb|CBL87227.1| UvrABC system protein B [uncultured Sphingobacteria bacterium]
          Length = 672

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/669 (50%), Positives = 461/669 (68%), Gaps = 13/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AI QL++GI+  E+ Q+LLGVTGSGKTFTMA VIE +QRP +++ 
Sbjct: 3   FKLTSKFEPTGDQPNAIKQLVEGINKNEEFQVLLGVTGSGKTFTMANVIEQVQRPTLILT 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLY+EF  FFP NAVE+FVSYYDYYQPEAY+  +DTYIEK+ SINE+ID++R 
Sbjct: 63  HNKTLTAQLYAEFMEFFPDNAVEFFVSYYDYYQPEAYMHGSDTYIEKDLSINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D I+VSSVSCIYG+G+ E +   ++++K G+ + +   L  LV   Y R
Sbjct: 123 RATSSLLSGRRDVIIVSSVSCIYGMGNPEDFKNSVIRIKKGEVIARNAFLYKLVDSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +I   R TFRV GD+++I   ++ D  +RV  FG++IE+I      TG++I +++   I
Sbjct: 183 TEIDFKRATFRVKGDTVDINLPYV-DYGYRVIFFGDEIEKIERIEIETGKRIHDLDHCAI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + Y+ P+  L   +K I++EL       E EGR +EA+R+ +R+T+DLEM+   G C
Sbjct: 242 FPANLYIAPKDRLKFIIKDIEDELYDHEKFFEAEGRFIEAKRVRERVTFDLEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GR PG  P  L +Y PED L+ VDESHVT+PQ+ GM+ GD  RK  L  
Sbjct: 302 NGIENYSRFFDGRKPGTRPFCLLDYFPEDYLMIVDESHVTLPQVRGMWGGDRARKLNLVN 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL FEE+  +   T+ VSATPG++ELEQ +G++VEQI+RPTGL+DPP+
Sbjct: 362 YGFRLPSAIDNRPLSFEEFESVTNQTVYVSATPGNYELEQTEGVVVEQIVRPTGLLDPPI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI+   +   RIL+T LTKRMAE+LT+YL + NI+V+Y+HSEV TL
Sbjct: 422 EVRPSINQIDDLLEEIHGRIEIDERILITTLTKRMAEELTKYLEKLNIKVQYIHSEVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EII++LRLG FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL QT GRAA
Sbjct: 482 DRVEIIKNLRLGIFDVLVGVNLLREGLDMPEVSLVAILDADKEGFLRNNRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----- 734
           RN N  VI YAD  T S+Q+ IDET RRR  Q+ +N+K  I P ++ +   ++++     
Sbjct: 542 RNSNGLVIFYADKTTDSMQITIDETNRRRATQIAYNEKWGITPTTITKSKEDIVNQRTVL 601

Query: 735 ------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                 P    +    +++ D     +SK K +  +K    +M  AA +L+F  AA+ RD
Sbjct: 602 DIRVAQPKAYIEPEEISVAADPIIAYMSKDKIEDMIKQTEFKMKKAAKDLDFISAAQYRD 661

Query: 789 EIKRLKSSP 797
           E+  LK   
Sbjct: 662 ELFALKKKL 670


>gi|332299257|ref|YP_004441178.1| UvrABC system protein B [Porphyromonas asaccharolytica DSM 20707]
 gi|332176320|gb|AEE12010.1| UvrABC system protein B [Porphyromonas asaccharolytica DSM 20707]
          Length = 677

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/670 (50%), Positives = 454/670 (67%), Gaps = 13/670 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI+ ++RP +V++
Sbjct: 3   FQLTSKYKPTGDQPEAIAQLSQGVRDGLPHQTLLGVTGSGKTFTIANVIQQVERPTLVIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+  TDTYIEK+ +IN ++D++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLINTDTYIEKDMAINAELDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVV+SVSCIYG+ +   +   I++L++G  +E+  L+  L +  Y  
Sbjct: 123 RATASLLSGRRDVIVVASVSCIYGMANPNDFENKIIKLEVGMQIERDALMRRLAESYYVN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
                + G+FRV GD+I+IFP+    E VA+R+ ++ ++I+ I+   P++ +    ++++
Sbjct: 183 NKADFVSGSFRVKGDTIDIFPAIESFEGVAYRIELWDDEIDRITIIDPVSAESQGTLDSL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           +IY  + +VT       A+  IK++L  R  ELE+EG L EA+RL +R++YDLEM++  G
Sbjct: 243 RIYPANLFVTTEEQTQRAIVEIKKDLADRTAELEREGHLFEAKRLYERVSYDLEMIKAVG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR PGE P  L +Y P+D LL +DESHV+IPQI  MY GD  RK TL
Sbjct: 303 YCSGIENYSRYFDGRKPGERPFCLMDYFPDDYLLVIDESHVSIPQIRAMYGGDKARKTTL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP+ +DNRPL FEE+  L    I VSATP  +EL   +G++VEQ+IRPTGL+DP
Sbjct: 363 VEYGFRLPAALDNRPLEFEEFVNLTNQVIYVSATPADYELNMSEGVVVEQVIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+EIR    QV+D+ +EI +  ++  R L+T LTKRMAE+L++YL    I+  Y+HS+V 
Sbjct: 423 PIEIRPTEHQVDDLMEEIVIRTERNERTLVTTLTKRMAEELSDYLIRAGIKCAYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERI+I+  LR G +DVLVG+NLLREGLD PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERIQIMDSLREGAYDVLVGVNLLREGLDFPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---- 733
           AARNV+  VI YAD+IT S+Q  IDET RRR KQ+ +N+ HNI P  V  K    +    
Sbjct: 543 AARNVHGLVIFYADSITDSMQATIDETNRRRAKQIAYNEAHNITPTQVVSKRTNALSQEG 602

Query: 734 -----DPILLEDAATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                     E      I+        L++ K    ++ +RKQM+ AA  LNF EAAR+R
Sbjct: 603 YVTTKSSAQAEAYVEEEIAVASPVAEYLTQDKLPDLIEQVRKQMYAAAKELNFVEAARLR 662

Query: 788 DEIKRLKSSP 797
           DE+  L+S  
Sbjct: 663 DEMYALQSRL 672


>gi|313887287|ref|ZP_07820978.1| excinuclease ABC, B subunit [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923206|gb|EFR34024.1| excinuclease ABC, B subunit [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 677

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/673 (51%), Positives = 457/673 (67%), Gaps = 19/673 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI+ ++RP +V++
Sbjct: 3   FQLTSKYKPTGDQPEAIAQLSQGVRDGLPHQTLLGVTGSGKTFTIANVIQQVERPTLVIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+  TDTYIEK+ +IN ++D++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLINTDTYIEKDMAINAELDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVV+SVSCIYG+ +   +   I++L++G  +E+  L+  L +  Y  
Sbjct: 123 RATASLLSGRRDVIVVASVSCIYGMANPNDFENKIIKLEVGMQIERDALMRRLAESYYVN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
                + G+FRV GD+I+IFP+    E VA+R+ ++ ++I+ I+   P++ +    ++++
Sbjct: 183 NKADFVSGSFRVKGDTIDIFPAIESFEGVAYRIELWDDEIDRITIIDPVSAESQGTLDSL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           +IY  + +VT       A+  IK++L  R  ELE+EG L EA+RL +R++YDLEM++  G
Sbjct: 243 RIYPANLFVTTEEQTQRAIVEIKKDLGDRTAELEREGHLFEAKRLYERVSYDLEMIKAVG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR PGE P  L +Y P+D LL +DESHV+IPQI  MY GD  RK TL
Sbjct: 303 YCSGIENYSRYFDGRKPGERPFCLMDYFPDDYLLVIDESHVSIPQIRAMYGGDKARKTTL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP+ +DNRPL FEE+  L    I VSATP  +EL   +G++VEQ+IRPTGL+DP
Sbjct: 363 VEYGFRLPAALDNRPLEFEEFVNLTNQVIYVSATPADYELNMSEGVVVEQVIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+EIR    QV+D+ +EI +  ++  R L+T LTKRMAE+L++YL    I+  Y+HS+V 
Sbjct: 423 PIEIRPTEHQVDDLMEEIVIRTERNERTLVTTLTKRMAEELSDYLIRAGIKCAYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERI+I+  LR G +DVLVG+NLLREGLD PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERIQIMDSLREGAYDVLVGVNLLREGLDFPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+  VI YAD+IT S+Q  IDET RRR KQ+ +N+ HNI P  V  K    +    
Sbjct: 543 AARNVHGLVIFYADSITDSMQATIDETNRRRAKQIAYNEAHNITPTQVVSKRTNALSQ-- 600

Query: 738 LEDAATTNISIDAQ-------------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
            E   TT  S  A+                L++ K    ++ +RKQM+ AA  LNF EAA
Sbjct: 601 -EGYVTTKSSAQAEAYVEDQIAVASPVAEYLTQDKLPDLIEQVRKQMYAAAKELNFVEAA 659

Query: 785 RIRDEIKRLKSSP 797
           R+RDE+  L+S  
Sbjct: 660 RLRDEMYALQSRL 672


>gi|297624758|ref|YP_003706192.1| excinuclease ABC subunit B [Truepera radiovictrix DSM 17093]
 gi|297165938|gb|ADI15649.1| excinuclease ABC, B subunit [Truepera radiovictrix DSM 17093]
          Length = 682

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/659 (51%), Positives = 471/659 (71%), Gaps = 4/659 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++++ + P GDQP AIA+L++G+    + Q LLG TG+GKTFTMAK+IEA QRPA+++AP
Sbjct: 4   RVESPFSPRGDQPQAIAELVEGLGDGLRFQTLLGATGTGKTFTMAKIIEAAQRPALILAP 63

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NKIL AQL +EF++FFP  AVE+F+SYYDYYQPEAYVP  D +IEK+++IN +++R+RHS
Sbjct: 64  NKILTAQLAAEFRDFFPGAAVEFFISYYDYYQPEAYVPARDLFIEKDANINAELERLRHS 123

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
            TR+LL R D IVV+SVS IYG+GS ++Y Q+ + L++G    + E+L  LV QQY+R D
Sbjct: 124 TTRNLLTRRDTIVVASVSAIYGLGSPDTYQQLNLILRVGMRRNRDEILEQLVTQQYERND 183

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           + +  G FRV GD +E++ ++ ++   R+ +FG++I+ ++   P+TG ++  +ET  ++ 
Sbjct: 184 VELAAGRFRVKGDVVEVWAAY-DEAPLRIELFGDEIDRLTMTDPVTGAELAELETTTVFP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
             HYVTP   L  A+  I+ +L+ RL   E+ G+LLE QRL++R  YDLEML+T G C  
Sbjct: 243 AKHYVTPYEQLAPAIAQIERDLEARLEFFERAGKLLEKQRLKERTLYDLEMLKTLGYCSG 302

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSRYL GR PGEPP TL +Y P+D + F+DESHV +PQI GMY GD  RK TL +YG
Sbjct: 303 IENYSRYLDGRQPGEPPHTLLDYFPDDFITFLDESHVMLPQIRGMYNGDRARKQTLVDYG 362

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLP+ +DNRPL+ +E+       I VSATP  WE       + EQIIRPTGLVDP + +
Sbjct: 363 FRLPAALDNRPLKEDEFLARIGQAIFVSATPADWEYRHS-DRVAEQIIRPTGLVDPKITV 421

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           + +R Q++D+   I   A +G R+L+T LTK+MAEDLTEY  ++ +RVRYMHS++  +ER
Sbjct: 422 KPSRGQIDDLVFAIRERAARGERVLVTTLTKKMAEDLTEYFAQQGLRVRYMHSDIDAVER 481

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             IIRDLRLG FDVL+GINLLREGLD+PE  LVAILDADK GFLRS  SLIQTIGRAARN
Sbjct: 482 QVIIRDLRLGHFDVLIGINLLREGLDLPEVSLVAILDADKTGFLRSGRSLIQTIGRAARN 541

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           VN +V LYAD +++++Q AI ET RRREKQL +N  HNI P SV+++I +VI     E+ 
Sbjct: 542 VNGEVFLYADVVSEAMQDAISETERRREKQLAYNAAHNITPASVQKRIRDVIRG--DEEG 599

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
           A  +  +   +  L++   K  L +L  +M  A++ L+FE AA +RD I+ L++    +
Sbjct: 600 AEADAQLSPWERELAQDDLKQELAALEVEMWRASEALDFERAAAVRDRIRELEAKLQGK 658


>gi|152993729|ref|YP_001359450.1| excinuclease ABC subunit B [Sulfurovum sp. NBC37-1]
 gi|151425590|dbj|BAF73093.1| excinuclease ABC, B subunit [Sulfurovum sp. NBC37-1]
          Length = 657

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/661 (50%), Positives = 464/661 (70%), Gaps = 8/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + + Y P+GDQPAAI  L+K I S  + Q LLGVTGSGKT+TMAKVIE  ++P +
Sbjct: 1   MPNFTVNSPYSPAGDQPAAIDSLVKSIESGNRYQTLLGVTGSGKTYTMAKVIEKTKKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M  NK LAAQLYSEFK+FFP+N VEYF+SYYDYYQPEAY+PR D +IEK+SSINE+++R
Sbjct: 61  IMTHNKTLAAQLYSEFKSFFPNNHVEYFISYYDYYQPEAYLPRQDLFIEKDSSINEELER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R S T SLL  +D IV++SVS  YG+GS E Y  ++ +L +G+   QKELL   V   Y
Sbjct: 121 LRLSTTASLLSHDDVIVIASVSANYGLGSPEDYKTIVQKLVVGEEYNQKELLLKFVDMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR D     G FRV G+ ++I+P++ ++ A R+  FG+++E I EF  LTG+K R+++ +
Sbjct: 181 KRNDEFFDIGNFRVSGEVVDIYPAYSDEFAIRIEFFGDEVEAIYEFNSLTGEKNRDLKEV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y+ + ++  +  L  A+K I+EEL  RL   +KE R++E  RL+QR  +DLEM+E TG
Sbjct: 241 TVYSANQFIVSKEKLARAVKTIEEELDERLSYFQKEDRMIEYNRLKQRTEFDLEMIEATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENYSR+LTG+ PGE P ++ +Y     +D L+ VDESHV++ Q  GMY GD  RK
Sbjct: 301 MCKGIENYSRHLTGKKPGETPYSMMDYFEAMHDDYLVIVDESHVSLSQFRGMYAGDRSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L ++GFRLPS +DNRPL F+E+    P  + VSATP   E+E    ++ EQ++RPTGL
Sbjct: 361 EVLVDHGFRLPSALDNRPLMFDEYINKAPHYLFVSATPAPLEIELS-SVVAEQVVRPTGL 419

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+  +  QVE+++D +    ++G RIL+TVLTK+MAE+LT Y  +  ++ RYMHS
Sbjct: 420 LDPEIEVIDSTYQVENLHDRMKPIIERGERILVTVLTKKMAEELTSYYNDLGLKARYMHS 479

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER ++IR LRLG+FD+LVGINLLREGLD+PE  LVAILDADKEGFLRSKTSLIQT
Sbjct: 480 DLDAIERNQVIRSLRLGEFDILVGINLLREGLDLPEVSLVAILDADKEGFLRSKTSLIQT 539

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
            GRAARN N KV++YA  +T S++  I+ T +RREKQ+ +NKKH I P +   +    +D
Sbjct: 540 AGRAARNANGKVLMYAKKMTDSMKATIETTQQRREKQIVYNKKHGITPTTTIRE----LD 595

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L  + A    +  ++   + K + +  +K L+ +M  AA NL FEEAAR+RDEI ++K
Sbjct: 596 ANLKVEDAGELYNKRSKLDKMPKAERQQLVKELKAKMLAAAKNLEFEEAARLRDEIAKVK 655

Query: 795 S 795
            
Sbjct: 656 K 656


>gi|29345980|ref|NP_809483.1| excinuclease ABC subunit B [Bacteroides thetaiotaomicron VPI-5482]
 gi|298387375|ref|ZP_06996928.1| excinuclease ABC subunit B [Bacteroides sp. 1_1_14]
 gi|81842293|sp|Q8AA95|UVRB_BACTN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|29337874|gb|AAO75677.1| excinuclease ABC subunit B [Bacteroides thetaiotaomicron VPI-5482]
 gi|298260044|gb|EFI02915.1| excinuclease ABC subunit B [Bacteroides sp. 1_1_14]
          Length = 677

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/668 (49%), Positives = 460/668 (68%), Gaps = 15/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT SLL  R D +VVSSVSCIYG+G+   + + +++++ G  +++   L  LV   Y R
Sbjct: 123 AATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMLDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++IF ++  D   RV+ +G++I+ I E  P+TG      E  KI
Sbjct: 183 NDIDLNRGNFRVKGDTVDIFLAYS-DTLLRVTFWGDEIDGIEEVDPITGVTTAPFEAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D LL +DESHV++PQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLLVIDESHVSVPQVRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEEMTKQVIYVSATPAEYELIQSEGIVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+LTEYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELTEYLLNNNVRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE------------ 727
           RNVN KVI+YAD IT S++L IDET RRREKQL +N+ + I PQ +K+            
Sbjct: 542 RNVNGKVIMYADKITDSMRLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGSPGS 601

Query: 728 KIMEVIDPILL-EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           +  E++       + ++ NI+ D     +SK + +  ++  RK M  AA  L F EAA+ 
Sbjct: 602 EADELLKEKHAYVEPSSPNIAADPIVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQY 661

Query: 787 RDEIKRLK 794
           R+E+ +L+
Sbjct: 662 RNELLKLE 669


>gi|288803851|ref|ZP_06409277.1| excinuclease ABC subunit B [Prevotella melaninogenica D18]
 gi|288333685|gb|EFC72134.1| excinuclease ABC subunit B [Prevotella melaninogenica D18]
          Length = 681

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/680 (47%), Positives = 456/680 (67%), Gaps = 21/680 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L  G+   +K Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FKLTSKYKPTGDQPEAIRELTDGLERGDKSQVLLGVTGSGKTFTVANVIANVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKAFFPDNAVEYYVSYYDYYQPEAYMPVTDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  SLL  R D IVVSSVSCIYG+G+  +  + ++ +K G  +++ + L  LV   Y R
Sbjct: 123 SAVSSLLSGRKDVIVVSSVSCIYGMGAPIAMKENVISIKKGQVIDRNDFLRRLVDALYMR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++ ++V  R++ + ++I+ I E   +   ++   +  ++
Sbjct: 183 NDIELQRGNFRVKGDTVDIAMAYNDNV-LRITWWDDEIDSIEEVDAVDFHRLATFDAYEV 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  ++    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTEGAIRQIQDDLVKQVDFFTEIGDNIKAQRIKERVEYDIEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ PED L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGREAGMRPYCLLDFFPEDYLMVIDESHVSVPQISAMYGGDRARKKNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE++ L    I VSATP  +EL + +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLRFEEFHDLIHQIIYVSATPADFELAESEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI + A++  R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V +L
Sbjct: 422 EVRPSENQIDDLMNEIVIRAEKEERVLVTTLTKRMAEELTEYLLNHDIRTAYIHSDVASL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +RI+II DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRIKIINDLRAGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RNVN KVI+YAD IT+S+Q  IDET RRR KQL++N+++NI P  + + I   +      
Sbjct: 542 RNVNGKVIMYADNITESMQKTIDETMRRRTKQLKYNEENNITPTQIVKAIKGTLPVGGES 601

Query: 734 -------------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
                            +E       + D     +SK + +  + +    M  AA +L+F
Sbjct: 602 NLTAQTASISRNVGQAYVEPNNGVLFAADPIVAKMSKAQLEKSIANTTILMKQAAKDLDF 661

Query: 781 EEAARIRDEIKRLKSSPYFQ 800
            +AA+ RDEI RL+     +
Sbjct: 662 LQAAQYRDEIIRLQKELEGK 681


>gi|327398718|ref|YP_004339587.1| UvrABC system protein B [Hippea maritima DSM 10411]
 gi|327181347|gb|AEA33528.1| UvrABC system protein B [Hippea maritima DSM 10411]
          Length = 660

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/658 (51%), Positives = 463/658 (70%), Gaps = 3/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++++DY P+GDQP  I +L+  + S  K Q+LLGVTGSGKTFT+A VI  + +P +
Sbjct: 1   MGIFKLKSDYEPAGDQPKVIKELVNNLKSGVKYQVLLGVTGSGKTFTIANVIAQIDKPVL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY+EF  FFP NAVEYF+SYYDYYQPEAYVPRTDTYI K+SSIN++IDR
Sbjct: 61  VISHNKTLAAQLYNEFSAFFPENAVEYFISYYDYYQPEAYVPRTDTYIAKDSSINDEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           ++     SLL R D IVV+SVSCIYG G  E YS++   + +GD + +K++LS+ V+  Y
Sbjct: 121 LKQKTVMSLLTRRDVIVVASVSCIYGAGEKEDYSKLAFYVNVGDKLSRKDILSNFVELLY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI   RGTFRV GD I+I+PS++ ++A R+ +F ++++ I  F PLT + +   E++
Sbjct: 181 VRNDINFERGTFRVRGDVIDIYPSYMRNLAIRIELFDDEVDRIVMFDPLTNRVVEERESV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++  + ++T +     A+K IKEELK R+   +  G+LLEAQR+E+R  +D+EM+E TG
Sbjct: 241 AVFPANFFITTKEKKERAIKSIKEELKERIEYFKSRGKLLEAQRIEERTNFDIEMIEQTG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           +C  IENYSR+ + R PG+PP TL +Y   D L+ +DESHVT+PQ+ GMYRGD+ RK TL
Sbjct: 301 TCAGIENYSRHFSKREPGQPPGTLIDYFGNDFLVIIDESHVTLPQLKGMYRGDYSRKKTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL+FEE        I VSATP  +E+    G++VEQIIRPTGL++P
Sbjct: 361 VDYGFRLPSALDNRPLKFEELMERWDQVIFVSATPDEFEVNLSNGVVVEQIIRPTGLMEP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           PVE++     V+D+Y EI  A Q+G ++L+T LTKRMAEDL+EY  E  ++ +YMHSE+ 
Sbjct: 421 PVEVKPMDNAVDDLYSEIKAATQKGGKVLITTLTKRMAEDLSEYYNELGLKTKYMHSELN 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER +II DLR  +FD ++G+NLLREGLDIPE  LVAILDADKEGFLRS TSLIQT GR
Sbjct: 481 AIERAKIISDLRNDRFDCIIGVNLLREGLDIPEVNLVAILDADKEGFLRSTTSLIQTAGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN  SKVI YA+ +T S++ AIDE  RRR+ Q E+NKKH I P+++ +     +  + 
Sbjct: 541 AARNAESKVIFYANKMTDSMKKAIDEIKRRRKIQAEYNKKHGIEPKTIVKSKDNKMLQMC 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             D   T    D   + +  K     +K L+K +  A   ++FE A + RDEI++LK 
Sbjct: 601 NLDYMDTLEEFD---VGVKPKDIPKRIKQLQKLLKDAVKKMDFESAIKYRDEIEKLKK 655


>gi|325280315|ref|YP_004252857.1| UvrABC system protein B [Odoribacter splanchnicus DSM 20712]
 gi|324312124|gb|ADY32677.1| UvrABC system protein B [Odoribacter splanchnicus DSM 20712]
          Length = 669

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/663 (48%), Positives = 450/663 (67%), Gaps = 6/663 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI QL++G+ S    Q+LLGVTGSGKTFT+A VI  + RP ++++
Sbjct: 3   FKLTSEFQPTGDQPEAIRQLIQGLQSGRSSQVLLGVTGSGKTFTVANVINEIHRPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYGEFKSFFPENAVEYFVSYYDYYQPEAYLPTTDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             T SLL  R D IVVSSVSC+YG+    ++   +  LK G ++ +  LL  LV   Y  
Sbjct: 123 RTTASLLSGRRDVIVVSSVSCLYGMADPRAFGSNVTHLKRGMTISRNVLLRRLVDALYAN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            +I   RG FR  G++++IFP+    + VA+R+  + + I+ IS F P+TGQ I + + +
Sbjct: 183 NEIEFKRGCFRAKGETVDIFPAIETYDGVAYRIEFWDDVIDRISSFNPVTGQSIGSQDEL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + +VT + T+  A+  I ++L+ +L  L++ G+ +EA+RLE+R+ YD+EM+   G
Sbjct: 243 DIYPANLFVTDKATIAHALVEIGQDLQDQLAYLKEIGKFMEAKRLEERVKYDMEMIRELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR  G  P  L +Y PED L+ +DESHVT+PQI  MY GD  RK TL
Sbjct: 303 YCPGIENYSRYFDGRKAGVRPFCLLDYFPEDFLMVIDESHVTLPQIRAMYGGDHARKLTL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLP+  DNRPL F+E+      TI +SATP  +ELE+ +GIIVEQIIRPTG+ DP
Sbjct: 363 VDYGFRLPAAFDNRPLTFDEFESKTGQTIYISATPADYELEKSEGIIVEQIIRPTGIPDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EI  ++ Q++ + +EI        R L+T LTKRMAE+L++YL    I+ +Y+HS+V 
Sbjct: 423 VIEIVPSKNQIDHLVNEIQQRIDLRERTLVTTLTKRMAEELSKYLDRIGIKCQYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER++I+ +LR G  DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TIERVKILENLRKGIIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ KVI+YAD +T+S+Q  IDET  RREKQL +N++H+I P+ + +     +    
Sbjct: 543 AARNVDGKVIMYADQVTRSMQETIDETNYRREKQLRYNEEHHIVPRQIYKSTDAALTQDT 602

Query: 738 LEDAATTN---ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +         +  D     +SK + +  ++  +  M  AA  L+F EAAR+RDE+ +L+
Sbjct: 603 SKAYVEEEHLHLVADPVVAYMSKPEIEKMIQKTKAAMQKAAKELDFIEAARLRDEMFQLE 662

Query: 795 SSP 797
              
Sbjct: 663 KKR 665


>gi|34540208|ref|NP_904687.1| excinuclease ABC subunit B [Porphyromonas gingivalis W83]
 gi|34396520|gb|AAQ65586.1| excinuclease ABC, B subunit [Porphyromonas gingivalis W83]
          Length = 678

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/673 (49%), Positives = 455/673 (67%), Gaps = 18/673 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + + P+GDQP AI QL++GI+     Q LLGVTGSGKTFT+A V+ A+ RP +V++
Sbjct: 3   YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +IN +I+++R 
Sbjct: 63  HNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D +VVSSVSC+YG+ + E++S+ ++ L  G   ++   +  LV+  Y  
Sbjct: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
             +    G FRV GDS++IFP+    + VA+RV  +  ++E +S F P TG++   +  +
Sbjct: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           KIY  + +VT +  ++ A+  I  +L  ++  L++ G+  EA+RL +R+TYDLEM+   G
Sbjct: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR+ GE P  L +Y PED LL +DESHVTIPQI  MY GD  RK  L
Sbjct: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP+ +DNRPLRF+E+  L P T+ +SATP  +EL + +G+IVEQ+IRPTGL+DP
Sbjct: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            ++++    QV+D+ +EI    ++  R+L+T LTKRMAE+L+EYL    I   Y+HS+V 
Sbjct: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+ I+ DLR G +D L+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-------- 729
           AAR+++ +VI YAD IT S+QL +DET RRR KQL +N+ H I PQ + +          
Sbjct: 543 AARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602

Query: 730 -----MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
                 +      +E+++   ++ D     LSK K +A + S +KQM  AA  L+F EAA
Sbjct: 603 VSALQSDTESGAYIEESSM--VAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAA 660

Query: 785 RIRDEIKRLKSSP 797
           R+RDE  RL+   
Sbjct: 661 RLRDEAARLEKKL 673


>gi|268680222|ref|YP_003304653.1| excinuclease ABC subunit B [Sulfurospirillum deleyianum DSM 6946]
 gi|268618253|gb|ACZ12618.1| excinuclease ABC, B subunit [Sulfurospirillum deleyianum DSM 6946]
          Length = 658

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/662 (50%), Positives = 459/662 (69%), Gaps = 7/662 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F +++ Y PSGDQP AI +L   I    + Q L+GVTGSGKT+TMA++I+ ++ P +
Sbjct: 1   MSEFFLESPYQPSGDQPRAIERLSASIKKGNRYQTLIGVTGSGKTYTMAQIIQKLKMPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M  NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR+D +IEK+SSINE+++R
Sbjct: 61  IMTHNKTLAAQLYSEFKGFFPKNHVEYFISYYDYYQPEAYIPRSDLFIEKDSSINEELER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D I V+SVS  YG+G+   Y +M+  ++ G+S+ QK+LL  LV   Y
Sbjct: 121 LRLSATASLLSYDDVICVASVSANYGLGNPHEYKKMVQIIEKGESINQKKLLLRLVDMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR D    RG FRV GD ++IFP++ E+ A RV  FG+++E I  F     +K++++  +
Sbjct: 181 KRNDTFFDRGCFRVSGDVVDIFPAYNEEEAIRVEFFGDEVESIYYFDVFLNKKLQSLPKV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA + ++     L  A+K I++EL  RL   +KE +L+E QRL+QR+ +DLEML++TG
Sbjct: 241 VLYAANQFIVGHERLQKAIKSIEQELDERLAYFQKEDKLVEYQRLKQRVEFDLEMLQSTG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494
           +C+ +ENY+RYLTG  PG  P +LF+Y     ++ L+ VDESHV++PQ  GM+ GD  RK
Sbjct: 301 ACKGVENYARYLTGIEPGATPYSLFDYFEAMGKEYLVIVDESHVSLPQFRGMFAGDRSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L EYGFRLPS +DNRPL F+E+    P  + VSATP   EL      + EQIIRPTGL
Sbjct: 361 EVLVEYGFRLPSALDNRPLMFDEFINKAPRYLFVSATPKELELGLSGENVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP VEI S++ QVE +YD I     +  ++L+TVLTK+MAE+LT Y  +  ++++YMHS
Sbjct: 421 LDPEVEILSSKNQVETLYDRIKEVTCKDEKVLVTVLTKKMAEELTRYYADLGMKIKYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER +IIR LR+G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT
Sbjct: 481 DIDAIERNQIIRSLRVGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN+N +V+++A+ IT S+Q AI+ T RRR  Q   N++H I P S   K+ E + 
Sbjct: 541 MGRAARNLNGRVLMFAEKITDSMQKAIETTLRRRALQEAFNQEHGITPTSTTRKMDENLK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                D   T    D     +   + K  +  L K MH AA  L FE+AA++RD+I++LK
Sbjct: 601 LEEHSDIYNTYDKKD----KIPPSEKKKIIAELTKAMHEAAKILEFEKAAKLRDQIEKLK 656

Query: 795 SS 796
            +
Sbjct: 657 KA 658


>gi|254995406|ref|ZP_05277596.1| excinuclease ABC subunit B [Anaplasma marginale str. Mississippi]
          Length = 651

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/656 (53%), Positives = 476/656 (72%), Gaps = 8/656 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++++PSGDQP AI  L++GI    K Q LLGVTGSGKTFTMA VIE  QRPAI
Sbjct: 1   MQRFKISSEFNPSGDQPGAIDSLVRGISCGAKEQTLLGVTGSGKTFTMASVIEQTQRPAI 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL+ E ++FFP NAVEYFVSYYDYYQPEAY+P++D YIEK++ IN++ID 
Sbjct: 61  IIAHNKTLAAQLHEEMRSFFPENAVEYFVSYYDYYQPEAYIPQSDVYIEKDALINDKIDL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRSLLER D +VV+SVSCIYG+GS E YS+M V + +G  ++  +L   LV+ QY
Sbjct: 121 LRHSATRSLLERRDVVVVASVSCIYGLGSPELYSEMTVPIALGMKLDMCQLQERLVELQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           K  +    RG+F V GD + +FPSH ED  W++S FG++++ I E  P +G     +E I
Sbjct: 181 KHGNR-YERGSFNVQGDVLSVFPSHYEDRIWKISFFGDEVDSIQEVDPKSGMVTLKLEKI 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           KI+ NSHYVTPRPTL  A+  I++EL    ++ ++  +++EA R+ +R  +D+EM+  TG
Sbjct: 240 KIFPNSHYVTPRPTLLQAISEIEKELDECALQFKQCNKIVEADRIVERTRFDIEMMRETG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           +C+ IENYSRYL G+  G+PP TL +Y+P+D+++F+DESH+T+PQI  MY GD  RKA L
Sbjct: 300 TCKGIENYSRYLCGKEAGDPPNTLLDYLPQDAIMFIDESHMTVPQIRAMYNGDRMRKANL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             +GFR+PS +DNRPL F EW   +PT + VSATPG +EL+Q  G+  EQ+IRPTGL+DP
Sbjct: 360 INHGFRMPSALDNRPLTFAEWEDRKPTVVYVSATPGQYELQQTGGVATEQLIRPTGLLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              ++ A  Q+ DV  E      +G R+L+T LTK+MAE+LTEY+ E  I+V Y+HS+VK
Sbjct: 420 VCIVKGADGQIHDVMCESQATIARGYRVLITTLTKKMAENLTEYMREMGIKVAYLHSDVK 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERIEII DLRLG  DVLVG+NL+REGLDIPEC LV ILDADKEGFLRS TSLIQTIGR
Sbjct: 480 TLERIEIISDLRLGVIDVLVGVNLMREGLDIPECALVGILDADKEGFLRSTTSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV  +VILYA+ ITKS++ A++ET RRR+ Q ++N++H+I P+++++ +   +   +
Sbjct: 540 AARNVEGRVILYANVITKSMRTAMEETDRRRDIQRKYNQEHSIVPRTIQKPVQTSLSERV 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                  +   +    +         +  L+K+M L A+NL+FE A  IR+EIKRL
Sbjct: 600 GSSRKKVSRDTNTDPANRD-------IVELQKEMLLCAENLDFERAVEIRNEIKRL 648


>gi|221195727|ref|ZP_03568781.1| excinuclease ABC, B subunit [Atopobium rimae ATCC 49626]
 gi|221184493|gb|EEE16886.1| excinuclease ABC, B subunit [Atopobium rimae ATCC 49626]
          Length = 743

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/709 (49%), Positives = 465/709 (65%), Gaps = 31/709 (4%)

Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183
                      S +     + + + P+GDQP AI +L +GI    + Q LLGVTGSGKTF
Sbjct: 13  VGAELRRFGRESGEERL-SVVSSFEPAGDQPQAIQKLAQGIEEGLRYQTLLGVTGSGKTF 71

Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243
           +MAK IE + RP ++M PNK LAAQ+ SE K  FPHNAV YFVSYYDYYQPEAYVP++DT
Sbjct: 72  SMAKTIEKLNRPTLIMEPNKTLAAQVASEMKELFPHNAVVYFVSYYDYYQPEAYVPQSDT 131

Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303
           YIEK++SINE+++++RH AT SLL R D IVV+SVSCIYGIGS + Y+ +   +     +
Sbjct: 132 YIEKDASINEEVEKLRHQATSSLLSRRDVIVVASVSCIYGIGSPQDYAGLAPNVDKSVPL 191

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           E+ +L+  L+  QY R D  + RG FRV GD +++FP + E+   R+  FG+++E I+E 
Sbjct: 192 ERDDLIKDLIDIQYDRNDYDLQRGMFRVRGDVVDVFPPYAEN-PLRIEFFGDEVETIAEI 250

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
             +TG+ IR  + + I+  SHYVT RP +  A++ I EEL+ R+ EL+   +LLEAQRL 
Sbjct: 251 SNVTGEVIREFDAVPIWPASHYVTERPKVTHALQTISEELEHRVAELKANDKLLEAQRLA 310

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
           QR +YDLEMLET G C  IENYSR+L GR PGEPP TL +Y P+D +  +DESHVT+PQI
Sbjct: 311 QRTSYDLEMLETMGYCNGIENYSRHLDGRAPGEPPYTLIDYFPKDMICIIDESHVTVPQI 370

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
            GMY GD  RK TL E+GFRLPS +DNRPLRF+E+    P  I VSATPG +E E     
Sbjct: 371 RGMYEGDRSRKVTLVEHGFRLPSALDNRPLRFDEFEARIPQFIYVSATPGDYE-ESVAQQ 429

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
            VEQIIRPTGL+DP VE+R  R Q++D+  E+     +  R+L+T LTKRMAEDLT++L 
Sbjct: 430 QVEQIIRPTGLLDPSVEVRPIRGQIDDLISEVKERVAKKERVLVTTLTKRMAEDLTDHLL 489

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +  I+V YMHS+  TL+R+ II++LR GK DVLVGINLLREGLDIPE  LVAILDADKEG
Sbjct: 490 DEGIKVNYMHSDTATLDRVAIIKELRQGKIDVLVGINLLREGLDIPEVSLVAILDADKEG 549

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           FLR++ SLIQT+GRAARN    VI+YAD IT S+++AIDET RRRE Q   N +H I PQ
Sbjct: 550 FLRNRRSLIQTMGRAARNAQGSVIMYADRITDSMRIAIDETRRRRELQESFNARHGIVPQ 609

Query: 724 SVKEKIMEV----------------------------IDPILLEDAATTNISIDAQQLSL 755
           ++ + I ++                             +         +  ++  +   L
Sbjct: 610 TIHKSIADISQFIDEAAENVDKRQRKDGIFYTASGEGAETQGAPGEVDSIEAMVEEFSEL 669

Query: 756 SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
            + + +  L  L   M  A+ ++++E AA++RD+I R++S       DD
Sbjct: 670 PRSEVETMLAHLESDMAQASTDMDYERAAQLRDQIVRIRSQLEGTTSDD 718


>gi|42520676|ref|NP_966591.1| excinuclease ABC subunit B [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410416|gb|AAS14525.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 635

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/653 (55%), Positives = 471/653 (72%), Gaps = 21/653 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI  L+ G++S ++ Q+LLGVTGSGKTFTMA VI    RPA++MA
Sbjct: 3   FQITTHFQPAGDQPQAIDSLIAGLNSNKRDQVLLGVTGSGKTFTMANVIARTNRPALIMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K  FPHNAVEYF+SYYDYYQPEAY+P+TDTYIEK+S+INE+I+ +R+
Sbjct: 63  HNKTLAAQLYEEMKGLFPHNAVEYFISYYDYYQPEAYLPQTDTYIEKDSAINERIEMLRY 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S   SLLER D IVV+SVSCIYG+GS ESY  MI+ L +G+ +   + LS+L   QYKR 
Sbjct: 123 STVCSLLERRDTIVVASVSCIYGLGSPESYRSMIIPLSVGNKIRINDFLSNLTDLQYKRS 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD ++IFPSH E+ AWR+S+FG++IEEISE   +TG   + V  I I+
Sbjct: 183 DARFERGYFRVRGDIVDIFPSHYENKAWRLSLFGDEIEEISEVDAITGNVTKGVNKITIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NS+Y+TPR  L  A++ +K+EL  RL     + +++EA+RLEQR  +D+EM+ TTG C+
Sbjct: 243 PNSYYITPREALLQAIELVKKELHERLDYYYSQNKIVEAKRLEQRTNFDIEMMRTTGICK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL G   G+PPPTLFEY+P+D +LFVDESHVT+PQ+  MY G+  RK  L +Y
Sbjct: 303 GIENYSRYLYGMEAGDPPPTLFEYLPKDVILFVDESHVTVPQVGAMYSGNEARKKKLIDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEEW  +RP T+ +SATPG +EL +   + +EQ+IRPTGL DP   
Sbjct: 363 GFRLPSAFDNRPLKFEEWEGVRPQTVYISATPGKYELAKTSNVFIEQVIRPTGLADPICI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++   +Q++DV  E  +   +G  +L+T LTK+MAE+L EY+ E N+RV Y+HS++  LE
Sbjct: 423 VKPIESQIDDVIHEAQVTIGKGFCVLITTLTKKMAENLAEYMSEMNMRVSYLHSDIAALE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII  LR  + DVLVG+NLLREGLDIPECGLVAILDADK+GFLRS+TSLIQTIGRAAR
Sbjct: 483 RIEIIYKLRSKEIDVLVGVNLLREGLDIPECGLVAILDADKQGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VILYAD IT S+  A+ ET RRR+KQ EHN  HNI P+++ + I   +       
Sbjct: 543 NAEGRVILYADKITGSLDRALRETERRRKKQEEHNILHNIVPKTIIKPISNTL------- 595

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                     Q+ ++++ K   +   LRKQM   A+NL FEEAAR    IK+L
Sbjct: 596 ----------QERAIAEPKVNTNKDDLRKQMIEHAENLEFEEAAR----IKKL 634


>gi|332882356|ref|ZP_08449984.1| excinuclease ABC, B subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332679740|gb|EGJ52709.1| excinuclease ABC, B subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 673

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/669 (49%), Positives = 468/669 (69%), Gaps = 12/669 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++  DY P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI+ + +P +
Sbjct: 1   MPKFELTADYSPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIQNINKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLY EFK+FFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID+
Sbjct: 61  ILSHNKTLAAQLYGEFKSFFPHNAVEYYVSYYDYYQPEAYIPSTDTYIEKDLAINDEIDK 120

Query: 258 MRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +R +AT +LL  R D +VVSSVSCIYG+G+  ++   +++LK G  +++   L  LV   
Sbjct: 121 LRLAATSALLSGRKDVVVVSSVSCIYGMGNPAAFYDNVIELKRGKLLDRNVFLRRLVDSL 180

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D+ + RG FRV GD+++I+ ++ +++  RV+ + ++I+ I E  P++  ++ + + 
Sbjct: 181 YTRNDLNLERGCFRVKGDTVDIYLAYSDNL-LRVTFWDDEIDAIEEVDPVSCLRLGSFDE 239

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
            +IY  + ++T + +   A+  I+++L  ++   E+ G+  EA+RL +R+TYD+EM+   
Sbjct: 240 YRIYPANLFMTTKESTAKAIHQIEDDLHKQVSYFEEIGKPYEAKRLYERVTYDMEMIREL 299

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRY  GR  G  P  L ++ PED L+ +DESHV++PQI+ MY GD  RK  
Sbjct: 300 GHCSGIENYSRYFDGREAGTRPYCLLDFFPEDFLIVIDESHVSVPQINAMYGGDRARKKN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLP+ MDNRPL+FEE+  L    I VSATP  +EL+Q +GI+VEQ+IRPTGL+D
Sbjct: 360 LVEYGFRLPAAMDNRPLKFEEFQQLAKQVIYVSATPADYELQQSEGIVVEQVIRPTGLLD 419

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R +  QV+D+ +EI    ++  RIL+T LTKRMAE+LT+Y  + +IR  Y+HS+V
Sbjct: 420 PIIEVRPSLNQVDDLMEEIQQRIEKDERILVTTLTKRMAEELTDYFMKHDIRTNYIHSDV 479

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER++I+ DLR G+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+G
Sbjct: 480 DTLERVQIMDDLRAGRFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVG 539

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE--KIMEVID 734
           RAARNV+ K I+YAD IT S+Q  IDET RRREKQL++N++H I PQ +K+  K+ ++I 
Sbjct: 540 RAARNVHGKAIMYADRITDSMQKTIDETNRRREKQLKYNEEHGITPQQIKKGRKMTDLIS 599

Query: 735 PILLEDAATTN--------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
                 A T             D     +++ + +  ++  RK M  AA  L+F EAA+ 
Sbjct: 600 ANAEAHAETRAYIEPEERMAVADPIMEYMTRDQLEKSIERSRKLMQEAAKKLDFIEAAQY 659

Query: 787 RDEIKRLKS 795
           RDE+ R++ 
Sbjct: 660 RDEMLRMEE 668


>gi|319957776|ref|YP_004169039.1| excinuclease ABC subunit b [Nitratifractor salsuginis DSM 16511]
 gi|319420180|gb|ADV47290.1| Excinuclease ABC subunit B [Nitratifractor salsuginis DSM 16511]
          Length = 657

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/661 (51%), Positives = 466/661 (70%), Gaps = 8/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++Q  Y P+GDQP AI +L   I +  + Q LLGVTGSGKT TMA++IE  QRP +
Sbjct: 1   MPKFKVQAPYQPAGDQPEAIEKLAASIEAGNRYQTLLGVTGSGKTHTMARIIEKTQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M  NK LAAQLYSEFK+FFP+N VEYF+SYYDYYQPEAY+PR D +IEK+SS+N +++R
Sbjct: 61  IMTHNKTLAAQLYSEFKSFFPNNHVEYFISYYDYYQPEAYIPRQDLFIEKDSSVNAELER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+GS E Y  ++ ++ +G+   Q+ELL   V+  Y
Sbjct: 121 LRLSATASLLSHDDVIVIASVSANYGLGSPEEYRSIVQKIVVGEEYNQRELLLKFVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR D    RG FRV G++I+I+P++ E++A+R+  FG+++E I  F  LTG+K+  ++  
Sbjct: 181 KRNDDFFDRGDFRVSGEAIDIYPAYSEELAYRIEFFGDEVEAIIGFDALTGEKVHELKEF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y+ + ++  R  +  A+K I+EEL  RL   E+EGR++E  RL+QR  +DLEMLETTG
Sbjct: 241 TLYSANQFIVGREKMVRAIKSIEEELGERLKFYEREGRMVEYNRLKQRTEFDLEMLETTG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENYSR+LTG+ PGE P +L +Y      D L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYSRHLTGKKPGETPYSLLDYFEAMHRDYLVMVDESHVSLPQFRGMYAGDRSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L EYGFRLPS +DNRPL+FEE+    P  + VSATPG WE E    +I EQ++RPTGL
Sbjct: 361 EVLVEYGFRLPSALDNRPLKFEEYIDKAPAYLFVSATPGEWETEHS-AVIAEQVVRPTGL 419

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+  +  QV  ++D I     +G R+L+TVLTK+MAE+LT Y  +  +RV+YMHS
Sbjct: 420 LDPEIEVIDSENQVAHLHDRIKEVTTRGERVLVTVLTKKMAEELTTYYNDLGLRVKYMHS 479

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER +IIR LRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+T+LIQT
Sbjct: 480 DLDAIERNQIIRSLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETALIQT 539

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
            GRAARNV+ KV++YA  IT S+Q  I+ T  RR+KQ+E+N+KH I P++   +    +D
Sbjct: 540 AGRAARNVHGKVLMYAKRITPSMQACIETTRARRQKQIEYNQKHGITPKTTVRE----LD 595

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L         +  ++   + K + +  +K L+ +M  AA  L+FEEAAR+RDEI ++K
Sbjct: 596 TDLKVAEPGELYNRHSKTDKMPKAERQRIVKELKAKMLSAAKKLDFEEAARLRDEIAKIK 655

Query: 795 S 795
            
Sbjct: 656 K 656


>gi|319901960|ref|YP_004161688.1| Excinuclease ABC subunit B [Bacteroides helcogenes P 36-108]
 gi|319416991|gb|ADV44102.1| Excinuclease ABC subunit B [Bacteroides helcogenes P 36-108]
          Length = 684

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/679 (48%), Positives = 460/679 (67%), Gaps = 22/679 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P+GDQP AIAQL +GI      Q LLGVTGSGKTFT+A VI  + +P +
Sbjct: 1   MNKFELTSTYKPTGDQPEAIAQLTEGIREGLPAQTLLGVTGSGKTFTIANVIANINKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID+
Sbjct: 61  ILSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDK 120

Query: 258 MRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +R +AT SLL  R D +VVSSVSCIYG+G+   +   +++++ G +  +   L  LV   
Sbjct: 121 LRLAATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEVQQGHNFSRNVFLRRLVDSL 180

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D+ + RG FRV GD+++I+ ++ +++  R+  +G++I+ I E  P++G  I   + 
Sbjct: 181 YVRNDMDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEIDSIEEVDPISGVSIAKFDG 239

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
            KIY  + ++T +     A+  I+++L  +    E EGR  EA+RL++R+TYD+EM+   
Sbjct: 240 YKIYPANLFMTTKEATLRAIHEIEDDLHKQTQWFENEGRPFEAKRLQERVTYDMEMIREL 299

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRY  GR  G  P  L ++ PED L+ +DESHV++PQI  MY GD  RK  
Sbjct: 300 GHCSGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKVN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLP+ MDNRPL+F+E+  +    I VSATP  +EL + +GI+VEQ+IRPTGL+D
Sbjct: 360 LVEYGFRLPAAMDNRPLKFDEFEAMAKQVIYVSATPADYELVRSEGIVVEQVIRPTGLLD 419

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LTEYL   N++  Y+HS+V
Sbjct: 420 PIIEVRPSHNQIDDLMEEIQVRIEKKERTLVTTLTKRMAEELTEYLLNNNVKCNYIHSDV 479

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER++I+ DLR GK+DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT G
Sbjct: 480 DTLERVKIMSDLREGKYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 539

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK---------- 726
           RAARNVN  VI+YAD IT+S+QL IDET RRREKQL +N++H I PQ ++          
Sbjct: 540 RAARNVNGMVIMYADKITESMQLTIDETNRRREKQLRYNEEHGIIPQQIRKAKNLNVFAG 599

Query: 727 ----------EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
                     +    V     +E    + I+ D     +S+ + +  ++  RK M  AA 
Sbjct: 600 AESSAETTGGKNKATVTPRPYVEQNTMSAIAADPIMQYMSRAQLEKSIERTRKLMQEAAK 659

Query: 777 NLNFEEAARIRDEIKRLKS 795
            LNF EAA+ RDE+ +++ 
Sbjct: 660 KLNFIEAAQYRDEVLKMEK 678


>gi|157165003|ref|YP_001466603.1| excinuclease ABC subunit B [Campylobacter concisus 13826]
 gi|112800746|gb|EAT98090.1| excinuclease ABC, B subunit [Campylobacter concisus 13826]
          Length = 658

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/661 (50%), Positives = 457/661 (69%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ + + PS DQ  A+ +++K I S  K Q LLGVTGSGKTFTMA VI  +  P +
Sbjct: 1   MSKFEISSKFSPSSDQARAVKEIVKSIKSGNKYQTLLGVTGSGKTFTMANVIRELNMPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M  NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR+D YIEK+SS+N++++R
Sbjct: 61  IMTHNKSLAAQLYSEFKGFFPKNHVEYFISYYDYYQPEAYIPRSDLYIEKDSSVNDELER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D + V+SVS  YG+G+   Y  M+  L +GD + Q+ LL  LV   Y
Sbjct: 121 LRLSATASLLSFDDVVCVASVSANYGLGNPSEYKGMVAYLNVGDKINQRTLLQKLVDMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR D+   RG FRV GD ++++P++  D A+R+  FG++IE +     L  +K  +++  
Sbjct: 181 KRNDVYFDRGDFRVNGDVVDVYPAYFNDEAFRIEFFGDEIETMYSLDVLENKKRHDLKKF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  S ++     L  AMK I+EEL  RL E  ++G+L+EAQRL+QR+ +DLEM+ +TG
Sbjct: 241 ILYPTSQFIVGADRLKIAMKEIEEELDARLKEFNEQGKLVEAQRLKQRVEFDLEMMASTG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+LTG+ PGE P ++F+Y     +D L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 MCKGIENYARHLTGQKPGETPYSMFDYFEISGKDYLVIVDESHVSLPQFRGMYAGDRSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L EYGFRLPS +DNRPL+F+E+   +   + VSATP  +EL   QG + EQI+RPTGL
Sbjct: 361 EVLVEYGFRLPSALDNRPLKFDEFISKKAKFLFVSATPNEYELGISQGHVYEQILRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +EI+ +  QVE ++DE      +G R+L+TVLTK+MAE+L+ Y  E  I+V+YMHS
Sbjct: 421 LDPIIEIKDSDNQVEALFDEAKAVIARGERVLVTVLTKKMAEELSRYYIELGIKVKYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER EIIR LR G+FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT
Sbjct: 481 DIDAIERNEIIRGLRSGEFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KV+++A  ITKS++ AID TT RR+ Q E+NK H I P S    I E + 
Sbjct: 541 MGRAARNVNGKVLMFAKKITKSMKEAIDTTTARRKFQDEYNKAHGITPHSASRNIEESLH 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                +  T  +   A    +   +  A +K LRKQM  AA  L FE+AA +RDEI +++
Sbjct: 601 ----VEDGTEILRKGANLEKMPASERAAIVKELRKQMLEAAAQLEFEKAAALRDEIAKMR 656

Query: 795 S 795
            
Sbjct: 657 K 657


>gi|253568620|ref|ZP_04846031.1| excinuclease ABC subunit B [Bacteroides sp. 1_1_6]
 gi|251842693|gb|EES70773.1| excinuclease ABC subunit B [Bacteroides sp. 1_1_6]
          Length = 677

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/668 (49%), Positives = 459/668 (68%), Gaps = 15/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT SLL  R D +VVSSVSCIYG+G+   + + +++++ G  +++   L  LV   Y R
Sbjct: 123 AATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMLDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++IF ++  D   RV+ +G++I+ I E  P+TG      E  KI
Sbjct: 183 NDIDLNRGNFRVKGDTVDIFLAYS-DTLLRVTFWGDEIDGIEEVDPITGVTTAPFEAYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T +     A+  I+++L  ++   E  G+  EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G  P  L ++ P+D LL +DESHV++PQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRAAGTRPYCLLDFFPDDFLLVIDESHVSVPQVRAMYGGDRARKINLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAMDNRPLKFEEFEEMTKQVIYVSATPAEYELIQSEGIVVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI L  ++  R+L+T LTKRMAE+L EYL   N+R  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE------------ 727
           RNVN KVI+YAD IT S++L IDET RRREKQL +N+ + I PQ +K+            
Sbjct: 542 RNVNGKVIMYADKITDSMRLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGSPSS 601

Query: 728 KIMEVIDPILL-EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           +  E++       + ++ NI+ D     +SK + +  ++  RK M  AA  L F EAA+ 
Sbjct: 602 EADELLKEKHAYVEPSSPNIAADPIVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQY 661

Query: 787 RDEIKRLK 794
           R+E+ +L+
Sbjct: 662 RNELLKLE 669


>gi|309777688|ref|ZP_07672638.1| excinuclease ABC subunit B [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914592|gb|EFP60382.1| excinuclease ABC subunit B [Erysipelotrichaceae bacterium 3_1_53]
          Length = 654

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/622 (53%), Positives = 436/622 (70%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + +DY P GDQP AI +L+ GI   +K Q+LLG TG+GKTFT++ VI  + +P 
Sbjct: 2   ETKLFDLVSDYQPQGDQPKAIRELVNGIKEGKKQQVLLGATGTGKTFTISNVIAQVNKPT 61

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V A NK LA QLYSEFK FFP+N VEYFVS +DYYQPEAY+P +DTYI+K ++ N ++D
Sbjct: 62  LVFAHNKTLAGQLYSEFKEFFPNNRVEYFVSNFDYYQPEAYIPSSDTYIDKNATTNIELD 121

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            +R +A  S+LER D I+++SV+CIYG  + E Y +M   +++GD +++KEL+  LV +Q
Sbjct: 122 MLRMAAVNSILERRDTIIIASVACIYGASNPEQYREMFFSIRVGDIIDRKELMGKLVARQ 181

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D+ ++RGTFRV GD IE+ P H +    R+ MF ++IE I E  PLTG+ +     
Sbjct: 182 YTRNDMDLLRGTFRVRGDVIEVAPGHTDSFILRIEMFDDEIERICEVDPLTGKVLNAYTV 241

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y  S Y T +  +N A   I+EEL  RL  LE EG+LLE QRLEQR  YD+E L   
Sbjct: 242 YVVYPASGYATKQEIINRAANTIEEELADRLQVLENEGKLLEKQRLEQRARYDIEALREF 301

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSR++ GR PGE P TLF+Y P+D LL VDESHV++PQI GMY GD  RK T
Sbjct: 302 GVCPGIENYSRHIDGRKPGERPYTLFDYFPDDFLLVVDESHVSLPQIRGMYNGDRARKET 361

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLPS +DNRP+RFEE+  +    I VSATPG++ELEQ +G I+EQIIRPTGL+D
Sbjct: 362 LVNYGFRLPSALDNRPMRFEEFEKMINQAIFVSATPGNYELEQTKGEIIEQIIRPTGLLD 421

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P V +R  + Q++D+ DEI    ++  R L+T LT RMAEDLT YL   + +V ++H EV
Sbjct: 422 PVVTVRPTQGQIDDLVDEIRTRIEKNERTLITTLTVRMAEDLTSYLKGMDFKVAWLHHEV 481

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           KT+ER EIIRDLR GK+DVL+GINLLREGLDIPE  L+ ILDADKEGFLRS+ SLIQ IG
Sbjct: 482 KTIERTEIIRDLRKGKYDVLIGINLLREGLDIPEVSLITILDADKEGFLRSERSLIQIIG 541

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN + +VI+YAD +T S+Q A+DET RRRE Q+ +NK+H I P+++ + I EV+   
Sbjct: 542 RAARNAHGQVIMYADKVTDSMQKALDETARRREIQIAYNKEHGITPKTIMKPIHEVVRSK 601

Query: 737 LLEDAATTNISIDAQQLSLSKK 758
             ++     I    +     +K
Sbjct: 602 ETQEMTAKYIGKKPRSAKRIRK 623


>gi|58585030|ref|YP_198603.1| excinuclease ABC subunit B [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|75497603|sp|Q5GRL3|UVRB_WOLTR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|58419346|gb|AAW71361.1| Helicase subunit of the DNA excision repair complex, UvrB
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 645

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/653 (54%), Positives = 467/653 (71%), Gaps = 13/653 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI  L+ G++  ++ Q+LLGVTGSGKTFTMA VI    RPA+++A
Sbjct: 3   FQLVTHFQPAGDQPQAIDSLVAGLNDNKRDQVLLGVTGSGKTFTMANVIARTNRPALIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFPHNAVEYF+SYYDYYQPEAY+P+TDTYIEK+S INE+ID +R+
Sbjct: 63  HNKTLAAQLYEEMKGFFPHNAVEYFISYYDYYQPEAYLPQTDTYIEKDSVINERIDMLRY 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  SLLER D IVV+SVSCIYG+GS ESY  M + L  GD +   + L+ L   QYKR 
Sbjct: 123 SAVCSLLERRDTIVVASVSCIYGLGSPESYLSMTITLSTGDRIRINDFLNDLANLQYKRS 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FR+ GD I+IFP++ ED AWR+ + GN+IE ISE   +TG  I+ ++ I I+
Sbjct: 183 DIRFERGYFRMRGDVIDIFPAYYEDKAWRLLLIGNEIEGISEINAITGNIIKCIDKITIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NS+++T R TL  A++ I+EEL  RL     + +++EAQRLEQR  +D+EM+  TG+C+
Sbjct: 243 PNSYHITSRETLLRAVQPIREELNERLDYYYSQNKIVEAQRLEQRTNFDIEMMVATGTCK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL G   G+ PPTLFEY+PED +LFVDESHVT+PQI  MY G+  RK  L ++
Sbjct: 303 GIENYSRYLYGMEAGDAPPTLFEYLPEDVILFVDESHVTVPQIGAMYNGNESRKKKLIDH 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F+EW  +RP TI +SATPG +EL +   + VEQ+IRPTG+ DP   
Sbjct: 363 GFRLPSAFDNRPLKFKEWESMRPQTIYISATPGKYELARTNNLFVEQVIRPTGITDPICI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ A  QV DV  E  +  ++G  +L+T LTK+MAE L E++ E N++V Y+HS++  LE
Sbjct: 423 VKPAEAQVYDVVHEAQVTIKRGFCVLITTLTKKMAEKLAEHMSELNMKVSYLHSDISALE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RI+I+  LR  + DVL+G+NLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RIDIVYKLRSKEIDVLIGVNLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  S+ ILYAD +T S+  A+ ET RRR+KQ +++  HN+ P+++ + I   +   ++  
Sbjct: 543 NAESRAILYADKVTGSMDRALKETERRRKKQKKYSVLHNVLPKTIIKPISNTLKEKVVVK 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             T  ++ D              + SLRKQM   A NL FEEAA+I++ I R+
Sbjct: 603 VTTIGMNKDT-------------VSSLRKQMLAHAKNLEFEEAAKIKNIIGRI 642


>gi|265756510|ref|ZP_06090716.1| excinuclease ABC, B subunit [Bacteroides sp. 3_1_33FAA]
 gi|263233698|gb|EEZ19313.1| excinuclease ABC, B subunit [Bacteroides sp. 3_1_33FAA]
          Length = 677

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/668 (48%), Positives = 461/668 (69%), Gaps = 15/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI+ + +P ++++
Sbjct: 3   FELISEYQPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYGEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   +   ++++K G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV  + ++I+ I E  P++G ++   +  KI
Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAYSDNL-LRVMFWDDEIDAIEEIDPVSGIRLATFDEYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T + +   A+  I+++L   + + E+EG++ EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKESQLRAIHQIEDDLTKEVAKFEEEGKMYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GRN G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRNAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFR+ S  DNRPL+FEE+  L    I VSATP  +EL + +GIIVEQ+IRPTGL+DP +
Sbjct: 362 YGFRMESAFDNRPLKFEEFKELAKQVIYVSATPADYELVESEGIIVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI    ++  R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQQRIEKEERVLVTTLTKRMAEELTEYLLHNDIRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ +LR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDELRQGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N KVI+YAD +T S++  IDET RRREKQL +N++H I P+ ++      +      
Sbjct: 542 RNINGKVIMYADRMTDSMKKTIDETNRRREKQLAYNEEHGITPKQIQRARNAALLGNNSN 601

Query: 740 DAATT-------------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           +AA T              ++ D     ++K + +  ++  RK M  AA  L F EAA+ 
Sbjct: 602 EAAGTTQGSKAYIEPSSNTMAADPIVQYMTKPQMEKTIERTRKLMQEAAKKLEFIEAAQY 661

Query: 787 RDEIKRLK 794
           RDE+ +L+
Sbjct: 662 RDELLKLE 669


>gi|332297756|ref|YP_004439678.1| UvrABC system protein B [Treponema brennaborense DSM 12168]
 gi|332180859|gb|AEE16547.1| UvrABC system protein B [Treponema brennaborense DSM 12168]
          Length = 665

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/663 (49%), Positives = 450/663 (67%), Gaps = 5/663 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++   Y PSGDQP AI +L++G    +  Q L GVTGSGKTFTMAK+IE +QRP +
Sbjct: 1   MRPFKVVAPYEPSGDQPQAIERLVEGFLRGDTYQTLKGVTGSGKTFTMAKIIEKVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK L+AQLY EFK+FFP NAVEYFVSYYDYYQPEAYVP  D YIEK++SIN++IDR
Sbjct: 61  IISHNKTLSAQLYREFKSFFPDNAVEYFVSYYDYYQPEAYVPARDLYIEKDASINDEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR +AT SL+ER D IVV++VSCIYG+G  E Y  M + ++ G +++       LV  QY
Sbjct: 121 MRLAATYSLMERRDVIVVATVSCIYGLGMPELYKDMRIHIEKGQTLDPAAFGRQLVTLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLE-DVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R D  + RG FR+ GD +E++P+++E D A+R+ +   +I  I  F  ++G+ I  ++ 
Sbjct: 181 ERNDAVLDRGRFRIRGDVLEVYPAYMETDEAYRIELDWEEIVRIRRFNTISGEIIEELDE 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             IY   H+V P   L +A   IK E++ R+  L++ G++LEA+RL+ R +YDLEML   
Sbjct: 241 TTIYPAKHFVVPPEMLKSATDRIKSEMEDRVQFLQQTGKILEAERLKTRTSYDLEMLSEM 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS  ++GR  GEPP TL  Y P D+L  +DE+HVT+ QI  MY GD  RK  
Sbjct: 301 GYCPGIENYSGPISGRRSGEPPATLLHYFPSDTLCLIDEAHVTVSQIGAMYEGDRSRKQN 360

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L ++GFRLPS +DNRPL++ E+  +   TI V+ATP   E+++    +VEQ+IRPTGL+D
Sbjct: 361 LIDFGFRLPSALDNRPLKYAEFESMISQTIYVTATPREQEIKRSTQ-VVEQLIRPTGLLD 419

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P VE+R +  Q+ED+Y EI     +G R LL  LTK+MAEDLTEYL    ++VRY+HSEV
Sbjct: 420 PIVEVRPSEGQMEDIYGEIKERIARGERCLLLTLTKKMAEDLTEYLDGLGLKVRYIHSEV 479

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           +T+ER+EI++ LR G+FDVL+GINLLREGLD+PE   +AILDADK GFLRS TSLIQ IG
Sbjct: 480 ETIERVEILKGLRSGEFDVLIGINLLREGLDLPEVSFIAILDADKIGFLRSATSLIQIIG 539

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  V++YAD  + +++ AI+ET  RRE Q  +N  H I P +V + + +++   
Sbjct: 540 RAARNQNGMVVMYADRESDAMKAAIEETVHRREVQEAYNTAHGITPATVSKAVADILVRQ 599

Query: 737 LLEDAATTNISIDAQQLSLS---KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             +  A         + S++     + +  +K+L KQM   AD L FE+AA +RDEI  +
Sbjct: 600 NEDKKAAVETETAVLRKSVNLFVPAQRRKLIKALEKQMSEFADCLEFEQAAAVRDEIAAI 659

Query: 794 KSS 796
           K  
Sbjct: 660 KEQ 662


>gi|330996268|ref|ZP_08320153.1| excinuclease ABC, B subunit [Paraprevotella xylaniphila YIT 11841]
 gi|329573460|gb|EGG55067.1| excinuclease ABC, B subunit [Paraprevotella xylaniphila YIT 11841]
          Length = 673

 Score =  776 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/669 (48%), Positives = 469/669 (70%), Gaps = 12/669 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++  DY P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI+ + +P +
Sbjct: 1   MPKFELTADYSPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIQNINKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLY EFK+FFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID+
Sbjct: 61  ILSHNKTLAAQLYGEFKSFFPHNAVEYYVSYYDYYQPEAYIPSTDTYIEKDLAINDEIDK 120

Query: 258 MRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +R +AT +LL  R D +VVSSVSCIYG+G+  ++   +++LK G  +++   L  LV   
Sbjct: 121 LRLAATSALLSGRKDVVVVSSVSCIYGMGNPAAFYDNVIELKRGKLLDRNVFLRRLVDSL 180

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D+ + RG FRV GD+++I+ ++ +++  RV+ + ++I+ I E  P++  ++ + + 
Sbjct: 181 YTRNDLNLERGCFRVKGDTVDIYLAYSDNL-LRVTFWDDEIDAIEEVDPVSCLRLGSFDE 239

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
            +IY  + ++T + +   A+  I+++L  ++   E+ G+  EA+RL +R+TYD+EM+   
Sbjct: 240 YRIYPANLFMTTKESTAKAIHQIEDDLHKQVSYFEETGKPYEAKRLYERVTYDMEMIREL 299

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRY  GR  G  P  L ++ PED L+ +DESHV++PQI+ MY GD  RK  
Sbjct: 300 GHCSGIENYSRYFDGREAGTRPYCLLDFFPEDFLIVIDESHVSVPQINAMYGGDRARKKN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLP+ MDNRPL+FEE+  L    I VSATP  +EL+Q +GI+VEQ+IRPTGL+D
Sbjct: 360 LVEYGFRLPAAMDNRPLKFEEFQQLAKQVIYVSATPADYELQQSEGIVVEQVIRPTGLLD 419

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R +  QV+D+ +EI    ++  RIL+T LTKRMAE+LT+Y  + +IR  ++HS+V
Sbjct: 420 PVIEVRPSLNQVDDLMEEIQQRIEKDERILVTTLTKRMAEELTDYFMKHDIRTNFIHSDV 479

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER++I+ DLR G+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+G
Sbjct: 480 DTLERVQIMDDLRAGRFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVG 539

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE--KIMEVI- 733
           RAARNV+ K I+YAD IT S++  IDET RRREKQL++N++H I PQ +K+  K+ ++I 
Sbjct: 540 RAARNVHGKAIMYADRITDSMRKTIDETNRRREKQLKYNEEHGITPQQIKKGRKMTDLIS 599

Query: 734 -------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
                  +P    +        D     +++ + +  ++  RK M  AA  L+F EAA+ 
Sbjct: 600 ANAEAHAEPRAYIEPEEKMAVADPIMEYMTRDQLEKSIERSRKLMQEAAKKLDFIEAAQY 659

Query: 787 RDEIKRLKS 795
           RDE+ R++ 
Sbjct: 660 RDEMLRMEE 668


>gi|193214950|ref|YP_001996149.1| excinuclease ABC subunit B [Chloroherpeton thalassium ATCC 35110]
 gi|193088427|gb|ACF13702.1| excinuclease ABC, B subunit [Chloroherpeton thalassium ATCC 35110]
          Length = 684

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/674 (48%), Positives = 463/674 (68%), Gaps = 15/674 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQP AI +L +G+   +K Q LLGVTGSGKTF+++ VI  + +P +V++
Sbjct: 10  FELSCPYSPAGDQPKAIKELTEGVLRGDKHQTLLGVTGSGKTFSISNVIANVNKPTLVIS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYF+SYYD+YQPEAY+P TD YI K+  IN++IDR+R 
Sbjct: 70  HNKTLAAQLYGEFKQFFPNNAVEYFISYYDFYQPEAYLPSTDKYIAKDFRINDEIDRLRL 129

Query: 261 SATRS-LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT + L  R D I+VSSVSCIYG+GS + ++  I+ L+ G    ++ELL+ LV   Y R
Sbjct: 130 RATSAVLSGRKDVIIVSSVSCIYGLGSPDEWASQIIFLETGMEKSRRELLNELVSIHYTR 189

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ ++RG FRV GD I+I P++ ED   R+  FG++I+ +  F   TG     V    I
Sbjct: 190 NDVELVRGKFRVRGDIIDIVPAY-EDYGVRIEFFGDEIDRLQLFEIKTGDVFEEVSDFAI 248

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +VT    L+  +K I++EL  RL  L  E +L+EAQRLE+R  YD+EM++  G C
Sbjct: 249 YPAKQFVTMEENLHKGIKAIEKELASRLNVLRSEDKLVEAQRLEERTRYDIEMMKELGYC 308

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI-PEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
             +ENYSR+L+GR  GE P  L +Y    D L+ +DESHVT+PQI  MY GD  RK+ L 
Sbjct: 309 SGVENYSRHLSGRGEGEKPYCLLDYFIDNDYLVVIDESHVTLPQIRAMYAGDRSRKSILV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPS +DNRPL+FEE+  + P TI VSATPG +EL+Q  G++VEQIIRPTGL+DP 
Sbjct: 369 EHGFRLPSALDNRPLKFEEFQAMTPQTIYVSATPGDYELQQSGGVVVEQIIRPTGLLDPS 428

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +++R  + Q++D+  EI + A+ G +IL   LTKRM+EDL +YL +  +R +Y+HSE+K+
Sbjct: 429 IDVRPVKNQIDDLLAEIRMRAKIGEKILTMTLTKRMSEDLQDYLEKVGVRSQYLHSEIKS 488

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L+R++I+R+LR+G+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR K SL+Q  GRA
Sbjct: 489 LDRVQILRELRMGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRDKKSLLQISGRA 548

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN N KVI YAD +T+S++  I+ET RRR  Q+ +N+ + I P+++ + + +V+    +
Sbjct: 549 ARNSNGKVIFYADKMTESMRAVINETERRRAIQIAYNEANGIVPKTIHKSLEQVMTSTSV 608

Query: 739 EDAATTNISIDAQQLS------------LSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
            DA         Q  S            ++K++  A +  + ++M  AA+  ++E+AA +
Sbjct: 609 ADAQRRQKRARMQVESGVENLLEEVIEKMTKEEKLAMIDQMTEEMVDAAERTDYEKAAYL 668

Query: 787 RDEIKRLKSSPYFQ 800
           RDEI+RL+++   Q
Sbjct: 669 RDEIRRLQNALNGQ 682


>gi|228469698|ref|ZP_04054666.1| excinuclease ABC subunit B [Porphyromonas uenonis 60-3]
 gi|228308717|gb|EEK17443.1| excinuclease ABC subunit B [Porphyromonas uenonis 60-3]
          Length = 677

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/670 (50%), Positives = 451/670 (67%), Gaps = 13/670 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI+ + RP +V++
Sbjct: 3   FQLTSKYKPTGDQPEAIAQLSQGVRDGLPHQTLLGVTGSGKTFTIANVIQQVDRPTLVIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+  TDTYIEK+ +IN ++D++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLINTDTYIEKDMAINAELDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVV+SVSCIYG+ +   +   I++L++G  +E+  L+  L +  Y  
Sbjct: 123 RATASLLSGRRDVIVVASVSCIYGMANPNDFENKIIKLEVGMQIERDALMRRLAESYYVN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
                + G+FRV GD+I+IFP+    E VA+R+ ++  +I+ I+   P++ +    ++ +
Sbjct: 183 NKADFVSGSFRVKGDTIDIFPAIESFEGVAYRIELWDEEIDRITIIDPISAESQGTLDNL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           +IY  + +VT       A+  IK++L  R  ELE+EG L EA+RL +R++YDLEM++  G
Sbjct: 243 RIYPANLFVTTEEQTQRAIVEIKKDLGDRTAELEREGHLFEAKRLYERVSYDLEMIKAVG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR PGE P  L +Y P+D LL +DESHV+IPQI  MY GD  RK TL
Sbjct: 303 YCSGIENYSRYFDGRKPGERPFCLMDYFPDDYLLVIDESHVSIPQIRAMYGGDRARKTTL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP+ +DNRPL F E+  L    I VSATP  +EL   +G++VEQ+IRPTGL+DP
Sbjct: 363 VEYGFRLPAALDNRPLEFSEFVNLTNQVIYVSATPADYELNMSEGVVVEQVIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+EIR    QV+D+ +EI +  ++  R L+T LTKRMAE+L++YL    I+  Y+HS+V 
Sbjct: 423 PIEIRPTEHQVDDLMEEIVIRTERNERTLVTTLTKRMAEELSDYLIRAGIKCAYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERI+I+  LR G +DVLVG+NLLREGLD PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERIQIMDSLREGAYDVLVGVNLLREGLDFPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---- 733
           AARNV+  VI YAD+IT S+Q  IDET RRR KQ+ +N++H+I P  V  K    +    
Sbjct: 543 AARNVHGLVIFYADSITDSMQATIDETNRRRAKQIAYNEEHHITPTQVVSKRTNALSQEG 602

Query: 734 -----DPILLEDAATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                     E      I+        L++ K    ++ +RKQM+ AA  LNF EAAR+R
Sbjct: 603 YVTTKSSAQAEAYVEEEIAVASPVAEYLTQDKLPELIEQVRKQMYAAAKELNFVEAARLR 662

Query: 788 DEIKRLKSSP 797
           DE+  L+S  
Sbjct: 663 DEMYALQSRL 672


>gi|237726985|ref|ZP_04557466.1| excinuclease ABC subunit B [Bacteroides sp. D4]
 gi|229433841|gb|EEO43918.1| excinuclease ABC subunit B [Bacteroides dorei 5_1_36/D4]
          Length = 677

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/668 (48%), Positives = 461/668 (69%), Gaps = 15/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI+ + +P ++++
Sbjct: 3   FELISEYQPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYGEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   +   ++++K G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV  + ++I+ I E  P++G ++   +  KI
Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAYSDNL-LRVMFWDDEIDAIEEIDPVSGIRLATFDEYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T + +   A+  I+++L   + + E+EG++ EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKESQLRAIHQIEDDLTKEVAKFEEEGKMYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GRN G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRNAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFR+ S  DNRPL+FEE+  L    I VSATP  +EL + +GIIVEQ+IRPTGL+DP +
Sbjct: 362 YGFRMESAFDNRPLKFEEFKELAKQVIYVSATPADYELVESEGIIVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI    ++  R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQQRIEKEERVLVTTLTKRMAEELTEYLLRNDIRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ +LR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDELRQGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N KVI+YAD +T S++  IDET RRREKQL +N++H I P+ ++      +      
Sbjct: 542 RNINGKVIMYADRMTDSMKKTIDETNRRREKQLAYNEEHGITPKQIQRARNAALLGNNSN 601

Query: 740 DAATT-------------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           +AA T              ++ D     ++K + +  ++  RK M  AA  L F EAA+ 
Sbjct: 602 EAAGTTQGSKAYIEPSSNTMAADPIVQYMTKPQMEKTIERTRKLMQEAAKKLEFIEAAQY 661

Query: 787 RDEIKRLK 794
           RDE+ +L+
Sbjct: 662 RDELLKLE 669


>gi|332292837|ref|YP_004431446.1| excinuclease ABC, B subunit [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170923|gb|AEE20178.1| excinuclease ABC, B subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 666

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/663 (50%), Positives = 465/663 (70%), Gaps = 9/663 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ + P+GDQP AI  L+ G+++ E  Q LLGVTGSGKTFT+A VI+  Q+P +V+A
Sbjct: 3   FKLESPFKPTGDQPTAIKSLVDGVNANEAYQTLLGVTGSGKTFTVANVIQETQKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEA++P +  YIEK+ SINE+I++MR 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAFIPSSGVYIEKDLSINEEIEKMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IV++SVSC+YGIG+   + + I+++K    + +  LL  LV+  Y R
Sbjct: 123 STTTSLLSGRRDVIVIASVSCLYGIGNPAEFQKNIIEIKQDQVIARTMLLKKLVQSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +     G FR+ GD++E+FP +  D+A+R+  FG++IEEI  F P + + I     ++I
Sbjct: 183 TESEFNHGNFRIKGDTVEVFPGYA-DMAFRIHFFGDEIEEIEAFDPTSAEVIEKYSQLRI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +  L  A+  I E+L  ++   E  G+ LEA+RL++R  +DLEM+   G C
Sbjct: 242 YPANMFVTSQDVLQGAINQIGEDLTKQVGFFEGVGKHLEAKRLDERTNFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GR PG  P  L ++ P+D L+ VDESHVT+ Q+S MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDGREPGTRPFCLLDFFPDDYLMVVDESHVTVSQVSAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+FEEW  ++   I VSATP  +EL++ +G  VEQIIRPTGL+DP V
Sbjct: 362 YGFRLPAAMDNRPLKFEEWEAMQNQVIYVSATPADYELQKTEGAYVEQIIRPTGLLDPIV 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI     +  RIL+T LTKRMAE+LT+YL   +IR RY+HS+V TL
Sbjct: 422 EVRPSLNQIDDLIEEITKVTARNERILVTTLTKRMAEELTKYLTRIDIRTRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QTIGRAA
Sbjct: 482 ERVEIMQDLRKGLYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSNRSLTQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPI 736
           RN+N K I+YAD IT+S+Q  ID++  RR+KQ+++N KH ++P ++K+ +   +   +  
Sbjct: 542 RNINGKAIMYADKITRSMQETIDDSNYRRQKQIDYNTKHGLSPMAIKKSLDNAMTQKEAY 601

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK----R 792
            +E     N++ +  Q   ++ + +  ++S RK M  AA  L+F +AA++RD+IK    +
Sbjct: 602 KIEAEELVNLAAEDAQEYQTRPQIEKKIRSTRKAMEAAAKELDFMQAAKLRDQIKVYQDK 661

Query: 793 LKS 795
           LK 
Sbjct: 662 LKE 664


>gi|325851994|ref|ZP_08171077.1| excinuclease ABC, B subunit [Prevotella denticola CRIS 18C-A]
 gi|325484550|gb|EGC87466.1| excinuclease ABC, B subunit [Prevotella denticola CRIS 18C-A]
          Length = 681

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/677 (46%), Positives = 459/677 (67%), Gaps = 21/677 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L  G+   +K Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FKLTSKYRPTGDQPEAIRELTDGLERGDKSQVLLGVTGSGKTFTVANVIANVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKAFFPDNAVEYYVSYYDYYQPEAYMPTTDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  SLL  R D IVVSSVSCIYG+G+  +  + ++ ++ G +V++ + L  LV   Y R
Sbjct: 123 SAVSSLLSGRKDVIVVSSVSCIYGMGAPVAMKENVIPVRKGQTVDRNDFLRRLVDALYMR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++ ++V  R++ + ++I+ I E   +   +I + +  +I
Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYNDNV-LRITWWDDEIDTIEEVDSVDFHRIASFDDYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +    +A++ I+++L  ++   +  G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTESAIRQIQDDLVKQVDFFKGIGDNIKAQRIKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G+ P  L ++ P+D L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRQAGQRPYCLLDFFPKDYLMVIDESHVSVPQISAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE++ L    I VSATP  +EL++ +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLRFEEFHSLIHQVIYVSATPADYELKEAEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI + A++  R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V  L
Sbjct: 422 EVRPSENQIDDLMNEIVVRAEKEERVLVTTLTKRMAEELTEYLLNHDIRTAYIHSDVAGL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +RI II DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRIAIINDLRAGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP---- 735
           RN++ KVI+YAD IT+S+Q  IDET RRR KQL++N++H+I P+ +   I   +      
Sbjct: 542 RNIHGKVIMYADNITESMQKTIDETIRRRTKQLKYNEEHHITPKQIVRAIKGTLPAGSEG 601

Query: 736 ---------------ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
                            +E       + D     +S+ + +  +++    M  AA +L+F
Sbjct: 602 NTTSQTASIARKTGQAYVEPDNGMLFAADPVITKMSRAQLEKSIENTTALMKQAAKDLDF 661

Query: 781 EEAARIRDEIKRLKSSP 797
            +AA+ RDEI RL+   
Sbjct: 662 LQAAQYRDEIIRLQKEL 678


>gi|42526877|ref|NP_971975.1| excinuclease ABC subunit B [Treponema denticola ATCC 35405]
 gi|81831412|sp|Q73MY7|UVRB_TREDE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|41817192|gb|AAS11886.1| excinuclease ABC, B subunit [Treponema denticola ATCC 35405]
          Length = 662

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/660 (51%), Positives = 457/660 (69%), Gaps = 5/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +DY PSGDQ  AI  L  GI + +K Q L GVTGSGKTFTMA +I+A+Q+P +
Sbjct: 1   MKQFKLISDYKPSGDQGEAIKALSDGIIAGDKFQTLKGVTGSGKTFTMANIIQAVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP  D YIEK++SIN++IDR
Sbjct: 61  IISHNKTLAAQLYREFKTFFPENAVEYFVSYYDYYQPEAYVPARDLYIEKDASINDEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SL+ER D IVVS+VSCIYG+G  ES+  + + ++ G+++E ++L   L+  QY
Sbjct: 121 LRLSATFSLMERRDVIVVSTVSCIYGLGLPESWRDLRITIEKGENIEIEKLKKQLISLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D  + RG FRV GD +EIFP+++ED A+R+     +I  I +F P++G+ I+  E +
Sbjct: 181 ERNDAVLERGRFRVKGDVMEIFPAYMED-AYRLEFDWEEIVRIRKFNPISGEVIQEYEEL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+V P   +  A++ IK+EL+ RL  L KEG+LLEA+RL+ R  YD+EML   G
Sbjct: 240 SIYPAKHFVMPEDAIPNALERIKKELEERLNVLNKEGKLLEAERLKTRTEYDIEMLSEMG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYS  +  R PGEPP TLF Y P+D LLF+DESHVT PQ+  MY GD  RK  L
Sbjct: 300 YCPGIENYSAPIANRKPGEPPATLFHYFPDDFLLFMDESHVTFPQVGAMYEGDRSRKQNL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLP  +DNRPL+ +E+  +    + VSATPG  E++     IVEQ+IRPTGL+DP
Sbjct: 360 VDFGFRLPCALDNRPLKIDEFEKMLNQAVFVSATPGPKEIKYS-TRIVEQVIRPTGLLDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EI  +  Q+E +Y E+        R L+  LTK+MAEDLT+YL    ++V+Y+HSEV+
Sbjct: 419 IIEIHKSEGQMEHIYGEVKKRIALNERSLILTLTKKMAEDLTDYLTGLGLKVKYIHSEVE 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EI++ LR G+FDVL+GINLLREG+D+PE   + ILDADK GFLRS TSLIQ +GR
Sbjct: 479 TIERVEILKGLRAGEFDVLIGINLLREGIDLPEVSFIGILDADKIGFLRSTTSLIQIVGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---D 734
           AARN N KV++YAD I+ +++  I+ET RRR  Q  +NK+H I P+++K+ I +++   +
Sbjct: 539 AARNENGKVVMYADRISDAMKETIEETNRRRAIQEAYNKEHGITPKTIKKAIEDILTREN 598

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            I  E A      +      L+    K  +K L  QM   AD L FEEAA IRD+I+ +K
Sbjct: 599 EIKKEAALAEAGPLINSLNILNPADRKKLIKKLEAQMAEYADMLMFEEAAVIRDKIEEVK 658


>gi|188995449|ref|YP_001929701.1| excinuclease ABC subunit B [Porphyromonas gingivalis ATCC 33277]
 gi|188595129|dbj|BAG34104.1| excinuclease ABC B subunit [Porphyromonas gingivalis ATCC 33277]
          Length = 678

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/671 (49%), Positives = 453/671 (67%), Gaps = 14/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + + P+GDQP AI QL++GI+     Q LLGVTGSGKTFT+A V+ A+ RP +V++
Sbjct: 3   YKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+ +IN +I+++R 
Sbjct: 63  HNKTLAAQLYGEFKAFFPKNAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D +VVSSVSC+YG+ + E++S+ ++ L  G   ++   +  LV+  Y  
Sbjct: 123 RATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
             +    G FRV GDS++IFP+    + VA+RV  +  ++E +S F P TG++   +  +
Sbjct: 183 NKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSEL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           KIY  + +VT +  ++ A+  I  +L  ++  L++ G+  EA+RL +R+TYDLEM+   G
Sbjct: 243 KIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR+ GE P  L +Y PED LL +DESHVTIPQI  MY GD  RK  L
Sbjct: 303 YCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP+ +DNRPLRF+E+  L P T+ +SATP  +EL + +G+IVEQ+IRPTGL+DP
Sbjct: 363 VEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            ++++    QV+D+ +EI    ++  R+L+T LTKRMAE+L+EYL    I   Y+HS+V 
Sbjct: 423 IIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER+ I+ DLR G +D L+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK---IMEVID 734
           AAR+++ +VI YAD IT S+QL +DE  RRR KQL +N+ H I PQ + +    I    D
Sbjct: 543 AARHIHGRVIFYADKITDSMQLTMDEAARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGD 602

Query: 735 PILLEDAATTN--------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
              L+    +         ++ D     LSK K +A + S +KQM  AA  L+F EAAR+
Sbjct: 603 VSALQSGTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARL 662

Query: 787 RDEIKRLKSSP 797
           RDE  RL+   
Sbjct: 663 RDEAARLEKKL 673


>gi|237710478|ref|ZP_04540959.1| excinuclease ABC subunit B [Bacteroides sp. 9_1_42FAA]
 gi|229455200|gb|EEO60921.1| excinuclease ABC subunit B [Bacteroides sp. 9_1_42FAA]
          Length = 677

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/668 (48%), Positives = 460/668 (68%), Gaps = 15/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI+ + +P ++++
Sbjct: 3   FELISEYQPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYGEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   +   ++++K G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV  + ++I+ I E  P++G ++   +  KI
Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAYSDNL-LRVMFWDDEIDAIEEIDPVSGIRLATFDEYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T + +   A+  I+++L   + + E+EG++ EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKESQLRAIHQIEDDLTKEVAKFEEEGKMYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GRN G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRNAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFR+ S  DNRPL+FEE+  L    I VSATP  +EL + +GIIVEQ+IRPTGL+DP +
Sbjct: 362 YGFRMESAFDNRPLKFEEFKELAKQVIYVSATPADYELVESEGIIVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI    ++  R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQQRIEKEERVLVTTLTKRMAEELTEYLLRNDIRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ +LR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDELRQGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N KVI+YAD +T S++  IDET RRREKQL +N++H I P+ ++      +      
Sbjct: 542 RNINGKVIMYADRMTDSMKKTIDETNRRREKQLAYNEEHGITPKQIQRARNAALLGNNSN 601

Query: 740 DAATT-------------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           +A  T              ++ D     ++K + +  ++  RK M  AA  L F EAA+ 
Sbjct: 602 EAVGTTQGSKAYIEPSSNTMAADPIVQYMTKPQMEKTIERTRKLMQEAAKKLEFIEAAQY 661

Query: 787 RDEIKRLK 794
           RDE+ +L+
Sbjct: 662 RDELLKLE 669


>gi|325473927|gb|EGC77115.1| UvrABC system protein B [Treponema denticola F0402]
          Length = 662

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/660 (51%), Positives = 456/660 (69%), Gaps = 5/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +DY PSGDQ  AI  L  GI + +K Q L GVTGSGKTFTMA +I+A+Q+P +
Sbjct: 1   MKQFKLISDYKPSGDQGEAIKALSDGIIAGDKFQTLKGVTGSGKTFTMANIIQAVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP  D YIEK++SIN++IDR
Sbjct: 61  IISHNKTLAAQLYREFKTFFPENAVEYFVSYYDYYQPEAYVPARDLYIEKDASINDEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SL+ER D IVVS+VSCIYG+G  ES+  + + ++ G+++E ++L   L+  QY
Sbjct: 121 LRLSATFSLMERRDVIVVSTVSCIYGLGLPESWRDLRITIEKGENIEIEKLKKQLISLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D  + RG FRV GD +EIFP+++ED A+R+     +I  I +F P++G+ I+  E +
Sbjct: 181 ERNDAVLERGRFRVKGDVMEIFPAYMED-AYRLEFDWEEIVRIRKFNPISGEVIQEYEEL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+V P   +  A++ IK EL+ RL  L KEG+LLEA+RL+ R  YD+EML   G
Sbjct: 240 SIYPAKHFVMPEDAIPNALERIKNELEERLNVLNKEGKLLEAERLKTRTEYDIEMLSEMG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYS  +  R PGEPP TLF Y P+D LLF+DESHVT PQ+  MY GD  RK  L
Sbjct: 300 YCPGIENYSAPIANRKPGEPPATLFHYFPDDFLLFMDESHVTFPQVGAMYEGDRSRKQNL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLP  +DNRPL+ +E+  +    + VSATPG  E++     IVEQ+IRPTGL+DP
Sbjct: 360 VDFGFRLPCALDNRPLKIDEFEKMLNQAVFVSATPGPKEIKYS-TRIVEQVIRPTGLLDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EI  +  Q+E +Y E+        R L+  LTK+MAEDLT+YL    ++V+Y+HSEV+
Sbjct: 419 IIEIHKSEGQMEHIYGEVKKRIALNERSLILTLTKKMAEDLTDYLTGLGLKVKYIHSEVE 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EI++ LR G+FDVL+GINLLREG+D+PE   + ILDADK GFLRS TSLIQ +GR
Sbjct: 479 TIERVEILKGLRAGEFDVLIGINLLREGIDLPEVSFIGILDADKIGFLRSTTSLIQIVGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---D 734
           AARN N KV++YAD I+ +++  I+ET RRR  Q  +NK+H I P+++K+ I +++   +
Sbjct: 539 AARNENGKVVMYADRISDAMKETIEETNRRRAIQEAYNKEHGITPKTIKKAIEDILTREN 598

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            I  E A      +      L+    K  +K L  QM   AD L FEEAA IRD+I+ +K
Sbjct: 599 EIKKEAALAEAGPLINSLNILNPADRKKLIKKLEAQMAEYADMLMFEEAAVIRDKIEEVK 658


>gi|149198552|ref|ZP_01875596.1| excinuclease ABC subunit B [Lentisphaera araneosa HTCC2155]
 gi|149138267|gb|EDM26676.1| excinuclease ABC subunit B [Lentisphaera araneosa HTCC2155]
          Length = 672

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/659 (48%), Positives = 458/659 (69%), Gaps = 2/659 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            +Q+++D+ P+GDQP AI +LL G+ S ++ Q LLGVTGSGKTFT+A ++E   RP +++
Sbjct: 16  PYQLKSDFEPAGDQPEAIKKLLSGLESSQQFQTLLGVTGSGKTFTVANIVEQAGRPVLIL 75

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQL+SEFK+FFP N VEYFVSY+DYYQPEAY+P+TDTYI K+SS+N++I++ R
Sbjct: 76  AQNKTLAAQLFSEFKHFFPKNRVEYFVSYFDYYQPEAYIPQTDTYIAKDSSVNDEIEKFR 135

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLLER D IV++SVSCIYG+G  E  ++M V+L +GD +++ EL+  L++ +Y+R
Sbjct: 136 LSATCSLLERRDVIVIASVSCIYGLGDPEMLTRMSVKLAVGDEMDRDELIHLLIESRYER 195

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RG F V GD + IFPS+ +D   R+  FG++I+EIS    L    +  +    I
Sbjct: 196 NDTAPSRGEFSVSGDVVNIFPSYKDDY-IRIEFFGDEIDEISLRDELNHNVLEGMSHTLI 254

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+ T +  L   +  + EEL  ++ + E EG+L+EAQR+ QR  YD+EM+   G C
Sbjct: 255 FPASHFATSKDRLEKMVPQVLEELDDQVSKFENEGKLVEAQRIYQRTNYDMEMVAELGYC 314

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           Q IENYSRY+TGR  G  P TL ++ P+D L  VDESHVTIPQ   MY GD  RK++L E
Sbjct: 315 QGIENYSRYVTGRPIGSRPFTLIDFFPDDYLTIVDESHVTIPQFRAMYNGDKSRKSSLVE 374

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRP++FEE+      T+ VSATP ++E+++    +VE ++RPTGLVDP V
Sbjct: 375 HGFRLPSALDNRPMKFEEFEAKMGQTVFVSATPANYEIDKS-SDVVELVVRPTGLVDPVV 433

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR  + QV+D+  EI   +++  R+++T LTK+ +EDL++YL +  ++  Y+HS + T+
Sbjct: 434 EIRPLKGQVDDLLAEIRDRSKKNERVIVTCLTKKTSEDLSDYLQDLGVKCTYIHSGIDTI 493

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIEI+R+LR G+ DV++GINLLREG+D+PE  LVA+LDADKEGFLRS T+L+Q  GRAA
Sbjct: 494 ERIEILRELRSGEIDVVIGINLLREGMDLPEVSLVAVLDADKEGFLRSTTALLQIAGRAA 553

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N   ILYADT+T S++  +DET +RREKQ+++N++H I PQ++  K  E +      
Sbjct: 554 RNANGSCILYADTMTGSMRRFLDETGKRREKQMQYNEEHGITPQTIIRKEQESLFSGGSS 613

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
                    ++      +   +  L+ L+ +M  AA+ L FE AA +RD+IK LK   Y
Sbjct: 614 VPGKRKNKKESILELREEDISEELLRDLKNEMIKAAEALEFERAAELRDKIKELKEKLY 672


>gi|256419588|ref|YP_003120241.1| excinuclease ABC, B subunit [Chitinophaga pinensis DSM 2588]
 gi|256034496|gb|ACU58040.1| excinuclease ABC, B subunit [Chitinophaga pinensis DSM 2588]
          Length = 684

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/679 (49%), Positives = 449/679 (66%), Gaps = 22/679 (3%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++Q  Y P+GDQP AI QL++GI      Q LLGVTGSGKTFT+A VI+ +QRP +V+
Sbjct: 2   PFKIQAPYAPAGDQPTAIRQLVEGIQDGAPAQTLLGVTGSGKTFTVANVIQQVQRPTLVL 61

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
             NK L AQLY EF+ FFP NAVEYFVSYYDYYQPEAY+P +DTYIEK+ SINE++D++R
Sbjct: 62  THNKTLVAQLYGEFRQFFPDNAVEYFVSYYDYYQPEAYMPVSDTYIEKDLSINEELDKLR 121

Query: 260 HSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
             AT SLL  R D IVV+SVSCIYG+G+   Y   I++L  G ++ +  +L  LV   Y 
Sbjct: 122 LRATTSLLSGRRDIIVVASVSCIYGMGNPTDYENGIIRLHKGQTIGRNTVLHGLVNSLYS 181

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R      RG FRV GD+++I   ++ D  +R++ FG++IEEI  F    G++I  +E   
Sbjct: 182 RTTGDFNRGNFRVQGDTVDINLPYV-DFGYRITFFGDEIEEIESFDVQNGKRIGTMENAA 240

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  + Y+ P+  +      I++EL  ++      G+ LEAQRL +R+ YDLEM+   G 
Sbjct: 241 IFPANLYMAPKDMMAQITFEIQDELMAQVEYFRSIGKHLEAQRLSERVNYDLEMIRELGY 300

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L  R PG  P  L +Y P+D LL +DESHVTIPQI GMY GD  RK TL 
Sbjct: 301 CSGIENYSRFLDRRAPGTRPFCLLDYFPKDFLLVIDESHVTIPQIGGMYGGDRSRKLTLV 360

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           ++GFRLPS MDNRPL F E+  L    I VSATPG +EL Q +G++VEQ++RPTGL++PP
Sbjct: 361 DFGFRLPSAMDNRPLNFYEFENLVNQAIFVSATPGEYELRQTEGVVVEQVVRPTGLLEPP 420

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR +  QV+D+ DEI+    +G R+L+T LTKRMAE++ +YL+  N++ RY+HSEV T
Sbjct: 421 IEIRPSVNQVDDLLDEIDKRVLKGGRVLVTTLTKRMAEEMDKYLHRINVKSRYIHSEVDT 480

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LERIEI+RDLRLG  DVLVG+NLLREGLD+PE  LVAILDADKEGFLR + SL QT GRA
Sbjct: 481 LERIEILRDLRLGNIDVLVGVNLLREGLDLPEVTLVAILDADKEGFLRDERSLTQTAGRA 540

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----- 733
           ARN    VI YAD IT S+Q  IDET RRREKQ+ +N  HNI P++V +   +++     
Sbjct: 541 ARNAEGLVIFYADKITDSMQRTIDETDRRREKQVAYNTAHNITPRTVLKSKEQILGQTSV 600

Query: 734 ---------------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
                          D + L        +      + +  + +  +  ++K M  AA +L
Sbjct: 601 LEIKQFDENSPYAVHDEVSLVAEDAMGYAKQEAVTAKTIPQMEKAISKVKKDMEKAAKDL 660

Query: 779 NFEEAARIRDEIKRLKSSP 797
           +F EAAR+RD++  ++   
Sbjct: 661 DFMEAARLRDQMFAMQREL 679


>gi|257456400|ref|ZP_05621596.1| excinuclease ABC subunit B [Treponema vincentii ATCC 35580]
 gi|257446060|gb|EEV21107.1| excinuclease ABC subunit B [Treponema vincentii ATCC 35580]
          Length = 663

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/660 (50%), Positives = 449/660 (68%), Gaps = 5/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++  DY P+GDQ  AI QL  GI + ++ Q L GVTGSGKTFTMA +I+A+Q+P +
Sbjct: 1   MKQFKLMADYQPAGDQGDAIRQLADGILAGDRFQTLKGVTGSGKTFTMANIIQAVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAYVP  D YIEK++SIN++IDR
Sbjct: 61  IISHNKTLAAQLYREFKGFFPENAVEYFVSYYDYYQPEAYVPARDLYIEKDASINDEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SL+ER D IVVS+VSCIYG+G  ES+  + + ++ G +V+  +L   L+  QY
Sbjct: 121 LRLSATFSLMERRDVIVVSTVSCIYGLGLPESWRDLRITIEKGQTVDPGKLKKQLISLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D  + RG FRV GD +E+FP+++E+ A+R+     +I  I  F PLTG+  +  E +
Sbjct: 181 ERNDAVLERGRFRVKGDVMEVFPAYMEE-AYRIEFDWEEIVRIRRFNPLTGEVSQEYEEL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+V P   +  A++ IK EL  RL  L+ +G+L EA+RL+ R  YD+EML   G
Sbjct: 240 SIYPAKHFVMPENAIPNAIERIKRELDARLEVLKAQGKLFEAERLKTRTEYDIEMLSEMG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYS  +  R PGEPP TLF Y P+D LLF+DESHVT PQI  MY GD  RK  L
Sbjct: 300 YCPGIENYSAPIANRKPGEPPATLFHYFPKDFLLFMDESHVTFPQIGAMYEGDRSRKQNL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLP  +DNRPL+  E+  +    I VSATPG  EL+     +VEQ+IRPTGL+DP
Sbjct: 360 VDFGFRLPCALDNRPLKINEFEAMLNQAIFVSATPGPKELQYS-TRVVEQLIRPTGLLDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EI  +  Q+E +Y E+     +  R L+  LTK+MAEDLT+YL    ++V+Y+HSEV+
Sbjct: 419 LIEIHPSEGQMEHIYGEVKKRIAKDERSLILTLTKKMAEDLTDYLTGLGLKVKYIHSEVE 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EI++ LR G+FDVL+GINLLREG+D+PE   + ILDADK GFLRS TSL+Q +GR
Sbjct: 479 TIERVEILKGLRAGEFDVLIGINLLREGIDLPEVSFIGILDADKIGFLRSTTSLVQIVGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--DP 735
           AARN N  V++YAD I+ +++  I+ETTRRR  Q  +N  H I P ++K+ I +++  + 
Sbjct: 539 AARNANGSVVMYADRISDAMKETIEETTRRRSIQQAYNDAHGITPTTIKKSIEDILVREA 598

Query: 736 ILLEDAATTNIS-IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            + +DAA      +      L+    K  +K L  QM   AD L FEEAA IRD+I+ +K
Sbjct: 599 EIKKDAARAETEPLVNSFNILNPADRKKLIKKLEAQMAEYADMLLFEEAAVIRDKIEEIK 658


>gi|224539631|ref|ZP_03680170.1| hypothetical protein BACCELL_04539 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518722|gb|EEF87827.1| hypothetical protein BACCELL_04539 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 683

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/677 (48%), Positives = 464/677 (68%), Gaps = 21/677 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P+GDQP AIA+L +G+      Q LLGVTGSGKTFT+A VI  + +P +
Sbjct: 1   MNKFELTSAYKPTGDQPEAIAELTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLYSEFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID+
Sbjct: 61  ILSHNKTLAAQLYSEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDK 120

Query: 258 MRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +R +AT SLL  R D +VVSSVSCIYG+G+   +   +++++ G +  +   L  LV   
Sbjct: 121 LRLAATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEVQQGKAFSRNVFLRRLVDSL 180

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R DI + RG FRV GD+++I+ ++ +++  R+  +G+D++ I E  P++G  I   + 
Sbjct: 181 YVRNDIDLNRGNFRVKGDTVDIYLAYADNL-LRIIFWGDDVDSIEEVDPISGVTIARFDA 239

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
            KIY  + ++T +     A+  I+++L  ++   E EGR  EA+RL++R+TYD+EM+   
Sbjct: 240 YKIYPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAKRLQERVTYDMEMIREL 299

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRY  GR  G  P  L ++ PED L+ +DESHV++PQI  MY GD  RK  
Sbjct: 300 GHCSGIENYSRYFDGRKAGSRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKIN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+D
Sbjct: 360 LVEYGFRLPAAMDNRPLKFEEFAEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLD 419

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LTE+L   +++  Y+HS+V
Sbjct: 420 PIIEVRPSHNQIDDLMEEIQIRIEKNERTLVTTLTKRMAEELTEFLLNNDVKCNYIHSDV 479

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT G
Sbjct: 480 DTLERVKIMSDLREGIYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 539

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE--------- 727
           RAARNVN  VI+YAD IT S++L IDET RRREKQL++N++H I PQ +K+         
Sbjct: 540 RAARNVNGMVIMYADRITDSMRLTIDETNRRREKQLKYNEEHGITPQQIKKGKNLNVFAS 599

Query: 728 ----------KIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
                     K   +     +E  ++ +I+ D     +S+ + +  ++  RK M  AA  
Sbjct: 600 NAPTEDSYIEKGATITPRPYIEQESSAHIAADPIVQYMSRPQLEKSIERTRKLMQEAAKK 659

Query: 778 LNFEEAARIRDEIKRLK 794
           L+F EAA+ RDE+ +++
Sbjct: 660 LDFIEAAQYRDELLKME 676


>gi|260911826|ref|ZP_05918393.1| excision endonuclease subunit UvrB [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634037|gb|EEX52160.1| excision endonuclease subunit UvrB [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 677

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/676 (46%), Positives = 448/676 (66%), Gaps = 17/676 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL +G+   +  Q+LLGVTGSGKTFTMA VI     P +V++
Sbjct: 3   FKLTSKYKPTGDQPEAIRQLTEGLDRGDMSQVLLGVTGSGKTFTMANVIAQHNVPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPDNAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            A  +LL  R D +VVSSVSCIYG+G   +    I+ L  G  +++ E L  LV   Y R
Sbjct: 123 RAVSALLSGRKDVVVVSSVSCIYGMGGPTAMESGIISLSKGQRIDRNEFLRKLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD++++  ++ +++  R++ + ++I+ I E   LT  +I +    KI
Sbjct: 183 NDIDLQRGNFRVKGDTVDVAMAYSDNL-LRITWWDDEIDSIEEVDSLTYHRIESFNDYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  ++    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTTKDQTERAIRCIQDDLVSQIDFFNELGDGIKAQRIKERVEYDMEMMKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PG+ P  L ++ P+D L+ +DESHV++PQ+ GMY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRQPGQRPYCLLDFFPKDYLMIIDESHVSVPQLGGMYGGDRARKQNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLP+  DNRPLRFEE++ L    I VSATP  +EL + +G++VEQ+IRPTGL+DP +
Sbjct: 362 FGFRLPAAFDNRPLRFEEFHSLINQVIYVSATPADYELGEAEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R +  Q++D+  EI   +++  R+L+T LTKRMAE+LTEYL +  ++  Y+HS+V TL
Sbjct: 422 IVRPSENQIDDLLAEILERSEKNERVLVTTLTKRMAEELTEYLLDHGVKTNYIHSDVATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+ I+  LR G++DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVRIMNALRAGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL-- 737
           RNVN KVI+YADTIT+S+Q  IDET RRR  Q+++N  H+I PQ + + I   +      
Sbjct: 542 RNVNGKVIMYADTITQSMQRTIDETARRRTIQMQYNADHHIIPQQIVKDIKGALTGNAPT 601

Query: 738 -------------LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
                          +      + D     +++++ +  + +    M  AA +L+F +AA
Sbjct: 602 VVTSKSYRSQEGGYVEPDAVAFAADPIVERMTRQQLEKSIANTTALMKQAAKDLDFIQAA 661

Query: 785 RIRDEIKRLKSSPYFQ 800
           + RDEI RL+     +
Sbjct: 662 QYRDEIARLQEQLELK 677


>gi|327312372|ref|YP_004327809.1| excinuclease ABC subunit B [Prevotella denticola F0289]
 gi|326944025|gb|AEA19910.1| excinuclease ABC, B subunit [Prevotella denticola F0289]
          Length = 681

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/677 (46%), Positives = 457/677 (67%), Gaps = 21/677 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L  G+   +K Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FKLTSKYRPTGDQPEAIRELTDGLERGDKSQVLLGVTGSGKTFTVANVIANVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKAFFPDNAVEYYVSYYDYYQPEAYMPTTDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  SLL  R D IVVSSVSCIYG+G+  +  + ++ ++ G +V++ + L  LV   Y R
Sbjct: 123 SAVSSLLSGRKDVIVVSSVSCIYGMGAPVAMKENVIPVRKGQTVDRNDFLRRLVDALYMR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++ ++V  R++ + ++I+ I E   +   +I + +  +I
Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYNDNV-LRITWWDDEIDTIEEVDSVDFHRIASFDDYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  ++   +  G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTENAIRQIQDDLVKQVDFFKGIGDNIKAQRIKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G+ P  L ++ P+D L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRQAGQRPYCLLDFFPKDYLMVIDESHVSVPQISAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE++ L    I VSATP  +EL++ +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLRFEEFHSLIHQVIYVSATPADYELKEAEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI + A++  R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V  L
Sbjct: 422 EVRPSENQIDDLMNEIVVRAEKEERVLVTTLTKRMAEELTEYLLNHDIRTAYIHSDVAGL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +RI II DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRIAIINDLRAGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP---- 735
           RN++ KVI+YAD IT+S+Q  IDET RRR KQL++N++H+I P+ +   I   +      
Sbjct: 542 RNIHGKVIMYADNITESMQKTIDETIRRRTKQLKYNEEHHITPKQIVRAIKGTLPAGSEG 601

Query: 736 ---------------ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
                            +E       + D     +++ +    +++    M  AA +L+F
Sbjct: 602 NTTSQTASIARKTGQAYVEPDNGMLFAADPVITKMNRAQLVKSIENTTALMKQAAKDLDF 661

Query: 781 EEAARIRDEIKRLKSSP 797
            +AA+ RDEI RL+   
Sbjct: 662 LQAAQYRDEIIRLQKEL 678


>gi|88602451|ref|YP_502629.1| excinuclease ABC subunit B [Methanospirillum hungatei JF-1]
 gi|88187913|gb|ABD40910.1| Excinuclease ABC subunit B [Methanospirillum hungatei JF-1]
          Length = 642

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/660 (51%), Positives = 447/660 (67%), Gaps = 19/660 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T FQ+ +++ P+G QP AI QL++G  S    Q LLGVTGSGKTFTMA VIE +Q P +
Sbjct: 1   MTEFQLVSNFKPTGSQPDAIRQLVEGFKSGSSFQTLLGVTGSGKTFTMANVIEQLQIPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLY EF++FFP+N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +I+ 
Sbjct: 61  VIAHNKTLAAQLYHEFRDFFPNNRVEYFVSYYDYYQPESYIPKKDQYIEKDAQINPKIEM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT SLL RND IV++SVSCIYG+G  ++Y +M   L +G  + ++E++S LV   Y
Sbjct: 121 MRLSATASLLSRNDVIVIASVSCIYGLGRPDTYKRMGFDLGVGQKISRREIISRLVDNLY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R +I II G FRV GD I++ PS+  ++  R+ +FG+++E I+E    TG  +  +  +
Sbjct: 181 ERNEIEIIPGRFRVKGDIIDLVPSYYNNI-IRIELFGDEVERITEINRTTGNPVERLRHV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  SHYV        A+  I++EL  RL  L     +LE+ RL QR  YD+EM+  TG
Sbjct: 240 YVYPASHYVIDESQKEKALLEIEKELNERLPHLG----MLESHRLRQRTMYDIEMIRETG 295

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC+ IENYSR+  GR PGE P  L +Y PE  L+F+DESH T+PQ+  M+ GD  RK  L
Sbjct: 296 SCKGIENYSRFFDGRKPGEKPYCLLDYFPERFLIFIDESHQTLPQVRAMFHGDRSRKTPL 355

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS  DNRPLRF E+       I VSATPG +EL+     +VEQIIRPTGLVDP
Sbjct: 356 VEYGFRLPSAFDNRPLRFFEFEQYLKNVICVSATPGDYELDHSTQ-VVEQIIRPTGLVDP 414

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R  + Q+E++  EI    ++G RIL+T LTKR+AE+LTEYL    ++ RY+HS++ 
Sbjct: 415 VVEVRPIQGQMENIKFEIQRTIERGDRILITTLTKRLAEELTEYLLSHGVKTRYLHSDID 474

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIR+LRLG FDVLVGINLLREGLDIPE G + ILDADKEGFLR   SLIQ IGR
Sbjct: 475 TLERTEIIRELRLGSFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDARSLIQIIGR 534

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN ++ V+LYADT+T S+Q AIDET RRR  Q+E+N  H I P+++++ + +      
Sbjct: 535 AARNSDAFVVLYADTVTGSMQKAIDETERRRALQIEYNTSHGITPKTIQKPVRD------ 588

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                        ++  + K      + +L  QM  AA  L+FEEA R+RD++  L+   
Sbjct: 589 -------QEIDLGKKKKVPKSALPNLIINLESQMRSAAQRLDFEEAIRLRDQLTALRKEM 641


>gi|20092137|ref|NP_618212.1| excinuclease ABC subunit B [Methanosarcina acetivorans C2A]
 gi|22257070|sp|Q8TKS3|UVRB_METAC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|19917359|gb|AAM06692.1| excinuclease ABC, subunit B [Methanosarcina acetivorans C2A]
          Length = 670

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/699 (49%), Positives = 465/699 (66%), Gaps = 32/699 (4%)

Query: 99  MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158
           M  S Q    L +    LL + + W             D   F++ + + P G QP AI 
Sbjct: 1   MKVSSQTPGELSKKKFELLHDARYW-------------DSPQFKLISGFEPKGSQPQAIE 47

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +L++G+  RE+ Q LLGVTGSGKT+T+A VI  +++P +V+A NK LAAQLY+EF+ FFP
Sbjct: 48  KLVEGLKKREQFQTLLGVTGSGKTYTVANVINQIRKPTLVIAHNKTLAAQLYNEFREFFP 107

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
            N VEYFVSYYDYYQPE+Y+P  D YIEK++ IN +I++MR +AT SL+ R D IVV+SV
Sbjct: 108 ENRVEYFVSYYDYYQPESYLPAKDQYIEKDAQINPKIEQMRLAATASLMSRQDVIVVASV 167

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           SCIYG+G+ E++ +M  +LK+GD V++KE+L  L+  Q++R D+ ++ G FRV GD+I+I
Sbjct: 168 SCIYGLGNPENFQKMGFELKVGDKVQRKEILEKLIDIQFERNDMELMPGRFRVKGDTIDI 227

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
            P + +D+  RV +FG++++ ISE    TGQ+  +++   +Y   HYV P     +A++ 
Sbjct: 228 IPGYFDDI-IRVELFGDEVDRISEVDKQTGQRKEDMDYFFVYPARHYVIPEEEQKSAIRS 286

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           I EEL+  L  L     LLE+ RL+QR  YD+EM+E TGSC+ IENYSR+   R PGE P
Sbjct: 287 ILEELEEHLPTLG----LLESHRLKQRTLYDMEMIEETGSCKGIENYSRHFDHRQPGEQP 342

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
             L +Y PED LL +DESH TIPQ+ GMY GD  RK +L +YGFRLPS  DNRPL+FEE+
Sbjct: 343 FCLLDYFPEDFLLIIDESHQTIPQLHGMYNGDRSRKKSLVDYGFRLPSAYDNRPLKFEEF 402

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
                  I VSATP  +E E     IVEQIIRPTGLVDP VE+R    QV DV  EI   
Sbjct: 403 EKYMENVIFVSATPSDYEREHS-ARIVEQIIRPTGLVDPEVEVRPLEGQVRDVMQEIRKI 461

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             +G R L+T LTK++AE+LTE+L    I+ RY+HS++KT+ER EIIR+LRLGKFDVLVG
Sbjct: 462 VDRGDRALVTTLTKKLAEELTEFLARNEIKARYLHSDIKTIERTEIIRELRLGKFDVLVG 521

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           INLLREGLDIPE G + ILDADKEGFLR   SLIQ IGRAARN +SKV+LYAD +T+SI+
Sbjct: 522 INLLREGLDIPEVGFIGILDADKEGFLRDSKSLIQIIGRAARNSSSKVVLYADNMTESIK 581

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
            A+DET RRR  Q+ +N++H I P+++++ I E              +        + K 
Sbjct: 582 KAVDETERRRSMQIAYNEEHGIVPKTIRKPIRE-------------KVVDITDTKHIPKT 628

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                +  L  +M  AAD L+FE A ++R+ IK+L+   
Sbjct: 629 DIPNVIIELDAEMREAADRLDFERAIQLRELIKKLEKEV 667


>gi|311748765|ref|ZP_07722550.1| excinuclease ABC subunit B [Algoriphagus sp. PR1]
 gi|126577300|gb|EAZ81548.1| excinuclease ABC subunit B [Algoriphagus sp. PR1]
          Length = 679

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/662 (49%), Positives = 469/662 (70%), Gaps = 14/662 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI +L +G+++ EK Q+LLGVTGSGKTFT+A +I+ +Q+P ++++
Sbjct: 3   FKLTSDYQPTGDQPKAIEKLSEGVNNGEKAQVLLGVTGSGKTFTIANLIQQVQKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEA++P + TYIEK+ SIN++I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPENAVEYFISYYDYYQPEAFIPSSGTYIEKDLSINDEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA+ SLL  R D IVV+SVSCIYGIG+ E + + +++L+ GD + + +LL  LV   Y R
Sbjct: 123 SASSSLLTGRRDVIVVASVSCIYGIGNPEEFGKNVIRLQEGDRIPRNQLLFKLVDILYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
               +  GTFRV GD+++IF ++  D  +R+  +G++IE I    P +G+K+ + + I I
Sbjct: 183 TQQDLTHGTFRVKGDTVDIFVAYA-DWGYRIFFWGDEIEAIQRIDPKSGKKLNDEKIISI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VT + TL TA+  I+ ++  ++   EKEG+ +EA+RL++R  +DLEM+   G C
Sbjct: 242 FPANLFVTGKDTLQTAIHEIQHDMVAQVNFFEKEGKFMEAKRLQERTEFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +ENYSRY   R PG  P  L +Y P+D LL +DESHVT+PQ+  M+ GD  RK  L +
Sbjct: 302 SGVENYSRYFDRREPGARPFCLIDYFPDDFLLVIDESHVTVPQVRAMWGGDRSRKVNLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL+FEE+  L    + VSATP  +EL   +G +VEQIIRPTGL+DP +
Sbjct: 362 FGFRLPSALDNRPLKFEEFETLANQVVYVSATPADYELNLTEGEVVEQIIRPTGLLDPTI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R ++ Q++D+ +EI+   +   R+L+T LTKRMAE+L +YL    ++ RY+HSEVKTL
Sbjct: 422 DVRPSQNQIDDLLEEIDQTIKTDARVLVTTLTKRMAEELQKYLERAGVKSRYIHSEVKTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EI+R+LRLG FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SL+QTIGRAA
Sbjct: 482 DRVEILRELRLGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNERSLVQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +VI+YAD IT S+++AIDET RRR  Q+ +N++H I P +V +   +++    + 
Sbjct: 542 RNQEGRVIMYADKITPSMKMAIDETKRRRALQIAYNEEHGITPTTVIKSRDKIMGQTKVA 601

Query: 740 DAA------------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           D+               N++ D     LSK+K +  +   +KQM  AA  LNF EAAR+R
Sbjct: 602 DSKRNPKVYAGPMPGEENMAADPVVQYLSKEKLEKLIVQTQKQMEKAAKELNFMEAARLR 661

Query: 788 DE 789
           DE
Sbjct: 662 DE 663


>gi|189466026|ref|ZP_03014811.1| hypothetical protein BACINT_02390 [Bacteroides intestinalis DSM
           17393]
 gi|189434290|gb|EDV03275.1| hypothetical protein BACINT_02390 [Bacteroides intestinalis DSM
           17393]
          Length = 682

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/676 (48%), Positives = 469/676 (69%), Gaps = 20/676 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P+GDQP AIA+L +G+      Q LLGVTGSGKTFT+A VI  + +P +
Sbjct: 1   MNKFELTSAYKPTGDQPEAIAELTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLYSEFK FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID+
Sbjct: 61  ILSHNKTLAAQLYSEFKAFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDK 120

Query: 258 MRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +R +AT SLL  R D +VVSSVSCIYG+G+   + + +++++ G +  +   L  LV   
Sbjct: 121 LRLAATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYENVIEVQQGKAFSRNVFLRRLVDSL 180

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R DI + RG FRV GD+++I+ ++ +++  R+  +G++I+ I E  P++G  I   +T
Sbjct: 181 YVRNDIDLNRGNFRVKGDTVDIYLAYADNL-LRIIFWGDEIDSIEEVDPISGVTIARFDT 239

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
            KIY  + ++T +     A+  I+++L  ++   E EGR  EA+RL++R+TYD+EM+   
Sbjct: 240 YKIYPANLFMTSKEATLRAIHEIEDDLHKQVQWFESEGRPFEAKRLQERVTYDMEMIREL 299

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRY  GR+ G  P  L ++ PED L+ +DESHV++PQI  MY GD  RK  
Sbjct: 300 GHCSGIENYSRYFDGRSAGSRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKIN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLP+ MDNRPL+FEE+  +    I VSATP  +EL Q +G++VEQ+IRPTGL+D
Sbjct: 360 LVEYGFRLPAAMDNRPLKFEEFEEMAKQVIYVSATPADYELIQSEGVVVEQVIRPTGLLD 419

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R +  Q++D+ +EI +  ++  R L+T LTKRMAE+LTE+L   N++  Y+HS+V
Sbjct: 420 PIIEVRPSHNQIDDLMEEIQIRIEKNERTLVTTLTKRMAEELTEFLLNNNVKCNYIHSDV 479

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER++I+ DLR G +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT G
Sbjct: 480 DTLERVKIMSDLREGLYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 539

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDP 735
           RAARNVN  VI+YAD IT+S+QL IDET RRREKQL++N+++ I PQ +K+ K + V  P
Sbjct: 540 RAARNVNGMVIMYADRITESMQLTIDETNRRREKQLKYNEEYGITPQQIKKAKNLNVFAP 599

Query: 736 I-----------------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
                              +E  ++ +I+ D     +S+ + +  ++  RK M  AA  L
Sbjct: 600 NTALENGFTEKGTTTPRPYVEQESSASIAADPIVQYMSRPQLEKSIERTRKLMQEAAKKL 659

Query: 779 NFEEAARIRDEIKRLK 794
           +F EAA+ RDE+ +++
Sbjct: 660 DFIEAAQYRDELLKME 675


>gi|150005555|ref|YP_001300299.1| excinuclease ABC subunit B [Bacteroides vulgatus ATCC 8482]
 gi|254884531|ref|ZP_05257241.1| excinuclease ABC subunit B [Bacteroides sp. 4_3_47FAA]
 gi|294778638|ref|ZP_06744060.1| excinuclease ABC, B subunit [Bacteroides vulgatus PC510]
 gi|319640777|ref|ZP_07995490.1| UvrABC SOS-repair system protein B [Bacteroides sp. 3_1_40A]
 gi|149933979|gb|ABR40677.1| UvrABC SOS-repair system protein B [Bacteroides vulgatus ATCC 8482]
 gi|254837324|gb|EET17633.1| excinuclease ABC subunit B [Bacteroides sp. 4_3_47FAA]
 gi|294447587|gb|EFG16165.1| excinuclease ABC, B subunit [Bacteroides vulgatus PC510]
 gi|317387589|gb|EFV68455.1| UvrABC SOS-repair system protein B [Bacteroides sp. 3_1_40A]
          Length = 677

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/668 (48%), Positives = 459/668 (68%), Gaps = 15/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AIAQL +G+      Q LLGVTGSGKTFT+A VI+ + +P ++++
Sbjct: 3   FELISEYQPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYGEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   +   ++++K G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV  + ++I+ I E  P++G ++   +  KI
Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAYSDNL-LRVMFWDDEIDAIEEIDPISGIRLATFDEYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T + +   A+  I+++L   + + E+EG++ EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKESQLRAIHQIEDDLTKEVAKFEEEGKMYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GRN G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRNAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFR+ S  DNRPL+FEE+  L    I VSATP  +EL + +GIIVEQ+IRPTGL+DP +
Sbjct: 362 YGFRMESAFDNRPLKFEEFKELAKQVIYVSATPADYELVESEGIIVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI    ++  R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQQRIEKEERVLVTTLTKRMAEELTEYLLRNDIRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ +LR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDELRQGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N KVI+YAD +T S++  IDET RRREKQL +N++H I P+ ++      +      
Sbjct: 542 RNINGKVIMYADRMTDSMKKTIDETNRRREKQLAYNEEHGITPKQIQRARNAALLGNNSN 601

Query: 740 DAATT-------------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           + A T               + D     ++K + +  ++  RK M  AA  L F EAA+ 
Sbjct: 602 EVAGTTQGPKAYIEPSSDTTAADPIVQYMTKPQMEKTIERTRKLMQEAAKKLEFIEAAQY 661

Query: 787 RDEIKRLK 794
           RDE+ +L+
Sbjct: 662 RDELLKLE 669


>gi|304382428|ref|ZP_07364927.1| excision endonuclease subunit UvrB [Prevotella marshii DSM 16973]
 gi|304336436|gb|EFM02673.1| excision endonuclease subunit UvrB [Prevotella marshii DSM 16973]
          Length = 675

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/676 (46%), Positives = 454/676 (67%), Gaps = 14/676 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + + Y P+GDQP AI QL +G+   +K Q+LLGVTGSGKTFT+A VI  M +P +
Sbjct: 1   MNAFSLTSRYSPTGDQPEAIRQLTEGLMRGDKAQVLLGVTGSGKTFTVANVIANMNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TD YIEK+ SINE+IDR
Sbjct: 61  VLSHNKTLAAQLYEEMKCFFPDNAVEYYVSYYDYYQPEAYLPSTDIYIEKDLSINEEIDR 120

Query: 258 MRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +R SA  +LL  R D IVVSSVSCIYG+G   +  + I+  K G  +++   L  LV   
Sbjct: 121 LRLSAVSALLSGRKDVIVVSSVSCIYGMGGPTAMEKSIIHFKRGQKIDRNTFLRQLVDAL 180

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R DI   RG FRV GD++++F ++  ++  RVS + ++I+ I E    T  ++ + + 
Sbjct: 181 YTRNDIAPARGNFRVKGDTVDVFMAYSNNI-LRVSFWDDEIDSIEELDTETYHQLASFDA 239

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
            +IY  + +VT +     A+++I+++L  ++   ++ G  L+AQR+++R+ YD+EM++  
Sbjct: 240 YQIYPANLFVTSKEQTKIAIRHIQDDLVEQIRYFQERGEDLQAQRIKERVEYDMEMIKEL 299

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRY  GR  G+ P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  
Sbjct: 300 GHCSGIENYSRYFDGRQAGQRPYCLLDFFPKDYLMVIDESHVSVPQICAMYGGDRARKTN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLP+  DNRPLRFEE+  +    I VSATP  +EL +  G++VEQ+IRPTGL+D
Sbjct: 360 LVQYGFRLPAAFDNRPLRFEEFQSMIHQVIYVSATPADYELNEAGGVVVEQVIRPTGLLD 419

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E++ +  Q++D+ +EI L  ++G R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V
Sbjct: 420 PTIEVKPSENQIDDLLNEIQLCTEKGERVLVTTLTKRMAEELTEYLLNHDIRANYIHSDV 479

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TL+R++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT G
Sbjct: 480 STLDRVQIMGDLRAGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 539

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN++ KVI+YADT+T+S+Q  I ET RRR KQ+++N++H+++PQ + ++I   +  I
Sbjct: 540 RAARNIHGKVIMYADTVTESMQRTIAETERRRTKQIQYNEEHHLHPQQIVKEIRNGLRSI 599

Query: 737 LLEDAATTNIS------------IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
                                   D     +++ + +  +   +K M  AA  L+F +AA
Sbjct: 600 HQPTDKKEQRYAPYIEPDRMISVADPIVKRMTRPQLEKSIAHTQKLMKQAAKELDFIQAA 659

Query: 785 RIRDEIKRLKSSPYFQ 800
           + RDEI +++     +
Sbjct: 660 QYRDEILKMEKELEMK 675


>gi|154174543|ref|YP_001408491.1| excinuclease ABC subunit B [Campylobacter curvus 525.92]
 gi|112802728|gb|EAU00072.1| excinuclease ABC, B subunit [Campylobacter curvus 525.92]
          Length = 659

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/662 (50%), Positives = 451/662 (68%), Gaps = 8/662 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ + + PS DQ  AI  ++K I S  K   LLGVTGSGKTFTMA VI  +  P +
Sbjct: 1   MSKFEISSKFSPSPDQARAIENIVKSIKSGNKYNTLLGVTGSGKTFTMANVIRELNMPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M  NK LAAQLYSEFK FFP+N VEYF+SYYDYYQPEAY+PR+D YIEK+SS+NE+++R
Sbjct: 61  IMTHNKSLAAQLYSEFKGFFPNNHVEYFISYYDYYQPEAYIPRSDLYIEKDSSVNEELER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT SLL  ND I V+SVS  YG+G+   Y  M+  L +G+ + Q+ LL+ LV   Y
Sbjct: 121 MRLSATASLLSFNDVICVASVSANYGLGNPSEYQGMVAYLNVGERLNQRNLLTKLVDMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR D    RG FRV GD ++I+P++  D A RV  FG++IE +  F  L  +K+++V   
Sbjct: 181 KRNDAYFDRGDFRVNGDVVDIYPAYYNDEALRVEFFGDEIEAMYHFDVLDNKKLKDVGKF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S ++     L  A+K I++EL  RL E    G+L+EAQRL+QR+ +DLEM+ +TG
Sbjct: 241 TLYATSQFIVGADRLKVAIKDIEKELDERLGEFNAAGKLVEAQRLKQRVEFDLEMMSSTG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI----PEDSLLFVDESHVTIPQISGMYRGDFHR 493
            C+ IENY+R+LTG+ PGE P ++F+Y       + L+ VDESHV++PQ  GMY GD  R
Sbjct: 301 MCKGIENYARHLTGQKPGETPYSMFDYFELLNSGEYLVIVDESHVSLPQFRGMYAGDRSR 360

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K  L EYGFRLPS +DNRPL+F+E+   +   + VSATP   EL    G + EQI+RPTG
Sbjct: 361 KEVLVEYGFRLPSALDNRPLKFDEFINKKAKFLFVSATPNELELNLSSGHVYEQILRPTG 420

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP +EI+ +  QVE ++DE     ++  R+L+TVLTK+MAE+L+ Y  E  ++V+YMH
Sbjct: 421 LLDPLIEIKDSDNQVEILFDEAKKVIERNERVLVTVLTKKMAEELSRYYTELGVKVKYMH 480

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S++  +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQ
Sbjct: 481 SDIDAIERNEIIRGLRGGDFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQ 540

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARNVN +V+++A  ITKS+Q A+D T  RR+ Q E+NK H I P+S    I E +
Sbjct: 541 TMGRAARNVNGRVLMFAKKITKSMQEAMDTTNARRKLQDEYNKAHGITPRSASRNIEESL 600

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
               +ED   T          +   +    +K LRKQM  AA  L FE+AA +RDEI ++
Sbjct: 601 H---IEDEGETYRKAK-NLEKMPAAERAKIVKELRKQMLEAAAQLEFEKAATLRDEIAKI 656

Query: 794 KS 795
           + 
Sbjct: 657 RK 658


>gi|154150649|ref|YP_001404267.1| excinuclease ABC subunit B [Candidatus Methanoregula boonei 6A8]
 gi|153999201|gb|ABS55624.1| excinuclease ABC, B subunit [Methanoregula boonei 6A8]
          Length = 660

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/664 (51%), Positives = 445/664 (67%), Gaps = 19/664 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F++ + + P+G QP AIAQL  G+    + Q LLGVTGSGKTFTMA VI A  +P +
Sbjct: 1   MTGFELVSSFLPAGSQPEAIAQLSDGLADNARFQTLLGVTGSGKTFTMANVIAAANKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLY EF +FFPHN VEYFVSYYDYYQPE+Y+P  D YIEK+S+IN +I+ 
Sbjct: 61  VIAHNKTLAAQLYQEFCDFFPHNRVEYFVSYYDYYQPESYIPAKDQYIEKDSAINPKIEM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SL  R D IVV+SVSCI+G+G+ E++  +   L +G  + + E++S L+  Q+
Sbjct: 121 LRLSATASLSHRRDVIVVASVSCIFGLGNPENFRNLGFDLSVGQKIPRNEIMSRLLDIQF 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI +  G FRV GD I+I P +  D+  R+ +FG++IE+I E    TG K   ++  
Sbjct: 181 ERNDIDLSPGRFRVKGDIIDIVPGYFNDI-IRIELFGDEIEKIREVDKNTGAKKEEMKYF 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+VTP     TA+  I+EEL   L  L     L+EA RL QR  +DLEM+  TG
Sbjct: 240 YVYPARHFVTPESAQKTAVASIQEELDEVLPTLG----LVEAHRLRQRTNFDLEMIRETG 295

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC+ IENYSR+  GR  GE P  L +Y P+D LL +DESH TIPQ+ GMY GD  RK TL
Sbjct: 296 SCKGIENYSRHFDGRKAGEKPYCLLDYFPDDFLLIIDESHQTIPQLHGMYNGDRSRKETL 355

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL+F E+       + VSATPG +EL+     +VEQIIRPTGLVDP
Sbjct: 356 VNYGFRLPSALDNRPLKFFEFEQYMRQVVFVSATPGPYELKHSTQ-VVEQIIRPTGLVDP 414

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R    Q  DV +E+     +G R+L+T LTK++AE+L+EYL ++ IR RY+HSE++
Sbjct: 415 SVEVRPIEGQTLDVIEEVKKTIARGDRVLVTTLTKKLAEELSEYLADKGIRTRYLHSEIQ 474

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIR+LRLGKFDVLVGINLLREGLDIPE G + ILDADKEGFLR   SLIQ IGR
Sbjct: 475 TLERTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDTRSLIQIIGR 534

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN+ V+LYAD++T S++ AI ET RRRE Q+ +N+ H+I PQ++ + + E      
Sbjct: 535 AARNVNANVVLYADSMTDSMKSAISETRRRREMQIAYNENHHITPQTIIKPVKE------ 588

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                            + K +    +  L KQM  AAD+L+FE A  +R+++K+L    
Sbjct: 589 -------KEVEIKDTKHVPKAEIPNVVIELEKQMRDAADSLDFERAIALREQVKKLNERL 641

Query: 798 YFQG 801
              G
Sbjct: 642 KEAG 645


>gi|23465559|ref|NP_696162.1| excinuclease ABC subunit B [Bifidobacterium longum NCC2705]
 gi|81847289|sp|Q8G5L9|UVRB_BIFLO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|23326224|gb|AAN24798.1| excinuclease ABC subunit B [Bifidobacterium longum NCC2705]
          Length = 703

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/694 (50%), Positives = 469/694 (67%), Gaps = 31/694 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N  +    F +++ Y PSGDQP AIA+L + I + E   +L+G TG+GKT T A +IE +
Sbjct: 4   NIERADKPFVVKSPYKPSGDQPQAIAELAERIENGENDVVLMGATGTGKTATTAWLIEKL 63

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN
Sbjct: 64  QRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNIN 123

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ++R+RH AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK+G  + + +LL   
Sbjct: 124 DDVERLRHQATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKVGQEINRDDLLRQF 183

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG +I 
Sbjct: 184 VAMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRISTLHPLTGDEID 242

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
               + I+  SHYV     +  A+K I+EEL+ RL EL K+G+ LEAQRL  R TYDLEM
Sbjct: 243 EENEVHIFPASHYVAGPERMERALKTIREELEERLAELRKQGKELEAQRLNMRTTYDLEM 302

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G C  +ENYSR+  GR  G PP TL ++ P+D LL +DESHVT+PQI  MY GD  
Sbjct: 303 LTQVGVCSGVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDAS 362

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS MDNRPL++ E+      T+ +SATPG +E+    G +VEQIIRPT
Sbjct: 363 RKRTLVEHGFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYEMGLSDG-VVEQIIRPT 421

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP +++R  + Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+
Sbjct: 422 GLLDPKIDVRPVKGQIDDLLAEIKARVAKNERALVTTLTKKMAEDLTDYLLERGIKVEYL 481

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++R LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 482 HSDVDTLRRVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLI 541

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+  VI+YAD  T++++ AIDET RRR KQ+ +N++H I+P+ + +KI +V
Sbjct: 542 QTIGRAARNVSGTVIMYADETTEAMRQAIDETDRRRAKQIAYNQEHGIDPKPLIKKISDV 601

Query: 733 IDPILLEDAATTNI-----------------------------SIDAQQLSLSKKKGKAH 763
            D +  ED  T  +                               +  +  L  +     
Sbjct: 602 NDMLAKEDVDTQTLLEGGYRNAGKAGNTHLGVPVLDPNEADKRHEEILKAGLPAQDLADL 661

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L +QMH AA+ L FE AAR+RDEI+ LK   
Sbjct: 662 IRQLSEQMHTAAEQLQFELAARLRDEIRDLKKEL 695


>gi|212693421|ref|ZP_03301549.1| hypothetical protein BACDOR_02937 [Bacteroides dorei DSM 17855]
 gi|212664065|gb|EEB24639.1| hypothetical protein BACDOR_02937 [Bacteroides dorei DSM 17855]
          Length = 677

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/668 (48%), Positives = 462/668 (69%), Gaps = 15/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AIAQL +G+  R   Q LLGVTGSGKTFT+A VI+ + +P ++++
Sbjct: 3   FELISEYQPTGDQPEAIAQLTEGVLERVPAQTLLGVTGSGKTFTIANVIKNINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +INE+ID++R 
Sbjct: 63  HNKTLAAQLYGEFKSFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINEEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +AT +LL  R D +VVSSVSCIYG+G+   +   ++++K G  +++   L  LV   Y R
Sbjct: 123 AATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIKKGKLLDRNVFLRRLVDSLYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I+ ++ +++  RV  + ++I+ I E  P++G ++   +  KI
Sbjct: 183 NDIELNRGNFRVKGDTVDIYLAYSDNL-LRVMFWDDEIDAIEEIDPVSGIRLATFDEYKI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + ++T + +   A+  I+++L   + + E+EG++ EA+RL +R+TYD+EM+   G C
Sbjct: 242 YPANLFMTTKESQLRAIHQIEDDLTKEVAKFEEEGKMYEAKRLYERVTYDMEMIRELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GRN G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRNAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFR+ S  DNRPL+FEE+  L    I VSATP  +EL + +GIIVEQ+IRPTGL+DP +
Sbjct: 362 YGFRMESAFDNRPLKFEEFKELAKQVIYVSATPADYELVESEGIIVEQVIRPTGLLDPVI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI    ++  R+L+T LTKRMAE+LTEYL   +IR  Y+HS+V TL
Sbjct: 422 EVRPSLNQIDDLMEEIQQRIEKEERVLVTTLTKRMAEELTEYLLRNDIRCNYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ +LR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMDELRQGVYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N KVI+YAD +T S++  IDET RRREKQL +N++H I P+ ++      +      
Sbjct: 542 RNINGKVIMYADRMTDSMKKTIDETNRRREKQLAYNEEHGITPKQIQRARNAALLGNNSN 601

Query: 740 DAATT-------------NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           +AA T              ++ D     ++K + +  ++  RK M  AA  L F EAA+ 
Sbjct: 602 EAAGTTQGSKAYIEPSSNTMAADPIVQYMTKPQMEKTIERTRKLMQEAAKKLEFIEAAQY 661

Query: 787 RDEIKRLK 794
           RDE+ +L+
Sbjct: 662 RDELLKLE 669


>gi|193212081|ref|YP_001998034.1| excinuclease ABC subunit B [Chlorobaculum parvum NCIB 8327]
 gi|193085558|gb|ACF10834.1| excinuclease ABC, B subunit [Chlorobaculum parvum NCIB 8327]
          Length = 684

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/670 (48%), Positives = 442/670 (65%), Gaps = 14/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y P+GDQP+AI  L +G+   ++ Q LLGVTGSGKTFT++ VI  + RP +V++
Sbjct: 11  FKLESPYGPTGDQPSAIKALTEGVLRGDRWQTLLGVTGSGKTFTVSNVIAQINRPTLVLS 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFPHNAVEYF+SYYD+YQPEAY+P  D YI K+  IN++I+R+R 
Sbjct: 71  HNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPSMDKYIAKDLKINDEIERLRL 130

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT +LL  RND IVVSSVSCIYG+GS E +   I++L+ G  +++ E L  LV   Y R
Sbjct: 131 RATSALLSGRNDVIVVSSVSCIYGLGSPEDWLAQIIELRQGMEMDRDEFLQMLVSLHYFR 190

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ +  G FRV GD I++ P H E++A R+  FG++I  I  F P TG+ I   E   I
Sbjct: 191 DDVDLSPGRFRVRGDVIDLVPGH-EELALRIEFFGSEIYSIQTFDPKTGEIISRDEYAFI 249

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +V     L TAM  I++EL  RL  L  E +L+EAQRLE+R  YDLEM++  G C
Sbjct: 250 YPARQFVADTEKLETAMLAIEDELAGRLNVLRGEDKLVEAQRLEERTRYDLEMMKELGYC 309

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENY+R++ GR PGE P  L +Y PED L+ VDESHVT+PQI GMY GD  RK  L E
Sbjct: 310 SGIENYARHIAGRKPGERPWCLLDYFPEDYLVVVDESHVTLPQIRGMYGGDRSRKTVLVE 369

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEE+    P  + VSATP   EL + +G++VEQ+IRPTGL+DP +
Sbjct: 370 HGFRLPSALDNRPLRFEEFEEKVPQVLCVSATPAEHELMRSEGVVVEQLIRPTGLLDPQI 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+     Q++ +   +     +G + L+  LTKRM+EDL  Y  +  +R +Y+HSE+K+L
Sbjct: 430 EVHPVAGQIDHLLARVRERIAKGQKSLVLTLTKRMSEDLHAYFRKLGLRSQYLHSEIKSL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+R+LR G  DVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL+Q  GRAA
Sbjct: 490 ERMQILRELRAGDIDVLVGVNLLREGLDLPEVALVAILDADKEGFLRNNKSLMQIAGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV   V+ YAD IT S++  IDET RRR  Q  +N+KH I P+S+ + + +V++   + 
Sbjct: 550 RNVEGLVLFYADKITASMREVIDETERRRRIQQAYNEKHGIEPRSIIKSVDQVLNTTSVA 609

Query: 740 DAAT------------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           DA                + +     +LS+ +    +  +  +M  AA   ++E+AA +R
Sbjct: 610 DAEERYRRKRLGLQKRPELELQGLLDTLSRNEVVKMVAEMNTEMQKAAKETDYEKAAYLR 669

Query: 788 DEIKRLKSSP 797
           DEI  L+   
Sbjct: 670 DEILMLEERI 679


>gi|149370618|ref|ZP_01890307.1| excinuclease ABC subunit B [unidentified eubacterium SCB49]
 gi|149356169|gb|EDM44726.1| excinuclease ABC subunit B [unidentified eubacterium SCB49]
          Length = 666

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/657 (51%), Positives = 457/657 (69%), Gaps = 6/657 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + +++ P+GDQP AI  L+ GI S EK Q LLGVTGSGKTFT+A VIE +Q+P +V+A
Sbjct: 3   FNLVSEFSPTGDQPEAIKALVTGIESEEKYQTLLGVTGSGKTFTVANVIEKVQKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFKN FP NAVEY+VSYYDYYQPEA++P + TYIEK+ SINE+I+ MR 
Sbjct: 63  HNKTLAAQLYTEFKNLFPENAVEYYVSYYDYYQPEAFIPTSGTYIEKDLSINEEIEVMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T SLL  R D IVV+SVSCIYGIG+   + + ++ L+ G  + + +LL  LV   Y R
Sbjct: 123 STTSSLLSGRRDVIVVASVSCIYGIGNPAEFQKSVISLEAGQIISRTKLLHQLVHSLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +     G FR+ GD++++FPS+  D A+R+  FG++IEEI  F P   + I   + + I
Sbjct: 183 TEAEFSHGRFRIKGDTLDVFPSYA-DHAFRIHFFGDEIEEIEAFNPENNEVIEKYDRLTI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT    L  A+  I+++L  ++   ++ G+ LEA+RLE+R T+DLEM+   G C
Sbjct: 242 YPANMFVTSPDVLKEAIWEIQQDLVKQVDYFKEIGKHLEAKRLEERTTFDLEMIRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL  R PG  P  L +Y P D L+ VDESHV+IPQ+  MY GD  RK  L E
Sbjct: 302 SGIENYSRYLDKRLPGTRPFCLLDYFPSDYLMVVDESHVSIPQVGAMYGGDRSRKENLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ MDNRPL+ EE+  L+   I VSATP  +ELE+  G+ VEQIIRPTGL+DPP+
Sbjct: 362 YGFRLPAAMDNRPLKAEEFESLQNQVIFVSATPADYELEKTGGVFVEQIIRPTGLLDPPI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR +  Q++D+ +EI +  ++  R+L+T LTKRMAE+LT+YL   N+R RY+HS+V TL
Sbjct: 422 EIRPSLNQIDDLLEEIQIRVEKDERVLVTTLTKRMAEELTKYLMRVNVRTRYIHSDVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI++DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT+GRAA
Sbjct: 482 ERVEIMQDLRRGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI----DP 735
           RN+N K I+YAD ITKS+QL ID T  +REKQ+ +N K+NI P  +K+     +      
Sbjct: 542 RNINGKAIMYADKITKSMQLTIDATNYKREKQIAYNTKNNITPTQIKKSFDNALSNSKKN 601

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
               + A +  +   +   L+K + + +++  RK M  AA  L+F  AA++RD+IK+
Sbjct: 602 AYTIETAQSLAAESEENEYLTKPQIEKNIRDTRKAMEKAAKELDFMMAAKLRDKIKK 658


>gi|171915971|ref|ZP_02931441.1| excinuclease ABC subunit B [Verrucomicrobium spinosum DSM 4136]
          Length = 745

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/719 (48%), Positives = 462/719 (64%), Gaps = 59/719 (8%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + FQ+ + Y P GDQ  AIA+L+K + +  + Q LLGVTGSGKTFTMA +I  + +PA++
Sbjct: 8   SPFQLNSHYSPEGDQGQAIAKLVKSVRAGNRHQTLLGVTGSGKTFTMANIIAQIGKPALI 67

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           M+ NK LAAQLYSEFKNFFPHNAVEYFVSY+DYYQPEAY+ R+DTYIEK+SSINE+I+RM
Sbjct: 68  MSHNKTLAAQLYSEFKNFFPHNAVEYFVSYFDYYQPEAYIARSDTYIEKDSSINEEIERM 127

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R S   +LL R D IVV+SVSCIYG+GS E Y  M++ LK+GD + ++  L+ LV   Y+
Sbjct: 128 RLSTMGALLTRKDVIVVASVSCIYGLGSPEDYEGMMLPLKVGDVITRESFLTRLVDMLYE 187

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RG FR  GD IE+FP++LED A RV  FG++I+ +S F PLTG     +    
Sbjct: 188 RNDIAFGRGKFRARGDVIEVFPAYLEDEAIRVEFFGDEIDRMSVFNPLTGTATGQLPGYT 247

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
            Y    +VTP   L  A+K I+EEL  R+ E E++G+LLEAQRL  R  YD+EM++  G 
Sbjct: 248 FYPAKQFVTPADKLRRAIKAIREELDARIAEFEQQGKLLEAQRLRMRTEYDIEMMQEMGF 307

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           CQ IENYSR+L  R PG  P TL  +  +D +LF+DESHVT+PQI GMY GD  RK  L 
Sbjct: 308 CQGIENYSRHLASREPGSTPGTLLSFFRDDFMLFLDESHVTVPQIGGMYEGDRSRKTVLV 367

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC------------------ 540
           E+GFRLPS MDNRPL+F E+       + VSATP ++E+E                    
Sbjct: 368 EHGFRLPSAMDNRPLKFPEFMKKMHQIVYVSATPATFEVENSIVGNTGYIPHKRERIGEE 427

Query: 541 ----------------------------------QGIIVEQIIRPTGLVDPPVEIRSART 566
                                             + +IVEQIIRPTGL+DP V +R  + 
Sbjct: 428 EGVPAMVPGSRSKPIVRISGSAEPLEKFDVTTKGRHLIVEQIIRPTGLLDPIVTMRPLKG 487

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q+++  +      ++  R+L+T LTKR AEDLT+YL   +++VRY+HSE+  +ER+EI+R
Sbjct: 488 QIDETIELCRQRIEKNERVLVTTLTKRTAEDLTDYLRNLDLKVRYLHSEIDAIERVEILR 547

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
            LR G+FD+LVGINLLREGLD+PE  LV ILDADKEGFLRS+TSL+QT GRAAR+VN +V
Sbjct: 548 ALRAGEFDILVGINLLREGLDLPEVSLVCILDADKEGFLRSETSLLQTAGRAARHVNGEV 607

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
           +L+AD IT+SIQ  I+ +  RRE+Q +HN+KH I PQ+V+  + E +           ++
Sbjct: 608 VLFADQITQSIQALINISAYRRERQEDHNEKHGITPQTVQRAVQESLHTYQAGRNVEESM 667

Query: 747 SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
             D              ++ L  +M  AA  L +E AA +RD+I+ LK      G++D+
Sbjct: 668 VRDEAGGY----AVTEVIRELESEMAEAAVKLEYERAALLRDQIRELKKQA---GIEDT 719


>gi|294668260|ref|ZP_06733365.1| hypothetical protein NEIELOOT_00171 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309779|gb|EFE51022.1| hypothetical protein NEIELOOT_00171 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 615

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/590 (57%), Positives = 443/590 (75%), Gaps = 1/590 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 9   SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 68

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 69  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 128

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 129 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 188

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G   + V    
Sbjct: 189 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 248

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    +E R +E QR+EQR  +DLEML   G 
Sbjct: 249 VFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGF 308

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 309 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 368

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P TI VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 369 DYGFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 427

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMAE LT+Y  E  I+VRY+HS++ T
Sbjct: 428 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDT 487

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 488 VERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRA 547

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           ARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K K
Sbjct: 548 ARNVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKNK 597


>gi|281356806|ref|ZP_06243297.1| excinuclease ABC, B subunit [Victivallis vadensis ATCC BAA-548]
 gi|281316933|gb|EFB00956.1| excinuclease ABC, B subunit [Victivallis vadensis ATCC BAA-548]
          Length = 671

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/673 (47%), Positives = 451/673 (67%), Gaps = 16/673 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++   Y P+GDQP AIAQLL     +++ Q LLGVTGSGKTFT+A  IE + RP +
Sbjct: 1   MGIFKLHAPYAPAGDQPQAIAQLLDNFKRQQRYQTLLGVTGSGKTFTLANAIEKLDRPVL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLYSEFK FFP NAVEYF+SYYDYY PE+Y+P+TDTYI K++SINE I++
Sbjct: 61  VLSHNKTLAAQLYSEFKAFFPENAVEYFISYYDYYLPESYIPQTDTYIAKDASINENIEK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SL+ER D IVV+SVSCIYG+GS + Y+ + V++++GD++++ E+L  LV  QY
Sbjct: 121 LRLSATASLVERRDVIVVASVSCIYGLGSPDDYADLCVRVEVGDTLDRDEILRRLVDIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   +G FRV GD ++++    +D   R+S FG+++E +     ++G+     + +
Sbjct: 181 GRNDMSPEKGEFRVRGDVVDVYEPQRDDF-IRISFFGDEVESLERRDVVSGKVKTRPKFV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++   H+V P+  +N A   I  E+  R+   EK   L+EAQRL QR+TYD+EM++  G
Sbjct: 240 TLFPCKHFVLPQERINGAADRILAEMAERVAWFEKNNLLVEAQRLYQRVTYDIEMMKEIG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYS YL+ R PG  P  LF++ P D L  +DESHVT+PQ+  MY+ D +RK  L
Sbjct: 300 YCSGIENYSMYLSNRRPGSRPYCLFDFFPPDFLTVIDESHVTLPQLQAMYKADRNRKMVL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLP+ ++NRPL+FEE+  L   T+ VSATPG +EL+      VE I+RPTGL+DP
Sbjct: 360 IDHGFRLPTALENRPLQFEEFEQLTGDTVFVSATPGEYELKHSDKP-VELIVRPTGLLDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    QV+DV  EI  A   G R L+T LTK+ +E L +YL E  ++  Y+HSE+ 
Sbjct: 419 VIEVRPLEGQVDDVIGEIRRATAAGERTLVTTLTKKSSERLADYLAELGVKASYLHSELD 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            LER+ ++  LR G FD ++GINLLREG+D+PE  LVAILDADKEGFLRS+ SL+QT GR
Sbjct: 479 ALERVRVLNKLRDGDFDCVIGINLLREGIDLPEVALVAILDADKEGFLRSERSLVQTAGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE----KIMEVI 733
           AARN + +VILYAD +T S++  ID+T  RR+KQ+E+NK HNI P+++++     I E++
Sbjct: 539 AARNKDGRVILYADNLTPSMKGLIDQTNARRKKQMEYNKLHNITPETIRKGRSLTIGEIV 598

Query: 734 DPILLEDAATTNI----------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
                +  +   +          S D   L LS    +A +  L  +M  AA+ L FE A
Sbjct: 599 STGSDKQKSKLRMPKLADTMFTDSTDLGSLGLSAADQEALIAELTGEMLAAAEALEFERA 658

Query: 784 ARIRDEIKRLKSS 796
           A +RD+IK L+  
Sbjct: 659 ADLRDQIKALQKK 671


>gi|23336676|ref|ZP_00121879.1| COG0556: Helicase subunit of the DNA excision repair complex
           [Bifidobacterium longum DJO10A]
 gi|189439606|ref|YP_001954687.1| excinuclease ABC subunit B [Bifidobacterium longum DJO10A]
 gi|189428041|gb|ACD98189.1| DNA excision repair enzyme Helicase subunit [Bifidobacterium longum
           DJO10A]
          Length = 703

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/694 (50%), Positives = 468/694 (67%), Gaps = 31/694 (4%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           N  +    F +++ Y PSGDQP AIA+L + + + E   +L+G TG+GKT T A +IE +
Sbjct: 4   NIERADKPFVVKSPYKPSGDQPQAIAELAERVENGENDVVLMGATGTGKTATTAWLIEKL 63

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           QRP +++ PNK LAAQL +EF+   P NAV YFVSYYDYYQPEAY+P+TDTYIEK+S+IN
Sbjct: 64  QRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDSNIN 123

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           + ++R+RH AT +LL R DC+VV++VSCIYG+G+ E Y+  ++ LK+G  + + +LL   
Sbjct: 124 DDVERLRHQATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKVGQEINRDDLLRQF 183

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V  QYKR DI   RGTFRV GD++EI P + E++A R+  FG++I+ IS  +PLTG +I 
Sbjct: 184 VAMQYKRNDIAFTRGTFRVRGDTVEIIPVY-EELAVRIEFFGDEIDRISTLHPLTGDEID 242

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
               + I+  SHYV     +  A+K I+EEL+ RL EL K+G+ LEAQRL  R TYDLEM
Sbjct: 243 EENEVHIFPASHYVAGPERMERALKTIREELEERLAELRKQGKELEAQRLNMRTTYDLEM 302

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L   G C  +ENYSR+  GR  G PP TL ++ P+D LL +DESHVT+PQI  MY GD  
Sbjct: 303 LTQVGVCSGVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGDAS 362

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL E+GFRLPS MDNRPL++ E+      T+ +SATPG +E+    G +VEQIIRPT
Sbjct: 363 RKRTLVEHGFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYEMGLSDG-VVEQIIRPT 421

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP + +R  + Q++D+  EI     +  R L+T LTK+MAEDLT+YL ER I+V Y+
Sbjct: 422 GLLDPKINVRPVKGQIDDLLAEIKARVAKNERALVTTLTKKMAEDLTDYLLERGIKVEYL 481

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+V TL R+E++R LR GK DV+VGINLLREGLD+PE  LVAILDADKEGFLRS  SLI
Sbjct: 482 HSDVDTLRRVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLI 541

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV+  VI+YAD  T++++ AIDET RRR KQ+ +N++H I+P+ + +KI +V
Sbjct: 542 QTIGRAARNVSGTVIMYADETTEAMRQAIDETDRRRAKQIAYNQEHGIDPKPLIKKISDV 601

Query: 733 IDPILLEDAATTNI-----------------------------SIDAQQLSLSKKKGKAH 763
            D +  ED  T  +                               +  +  L  +     
Sbjct: 602 NDMLAKEDVDTQTLLEGGYRNAGKAGNTHLGVPVLDPNEADKRHEEILKAGLPAQDLADL 661

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++ L +QMH AA+ L FE AAR+RDEI+ LK   
Sbjct: 662 IRQLSEQMHTAAEQLQFELAARLRDEIRDLKKEL 695


>gi|222824185|ref|YP_002575759.1| excinuclease ABC, subunit B [Campylobacter lari RM2100]
 gi|222539407|gb|ACM64508.1| excinuclease ABC, subunit B [Campylobacter lari RM2100]
          Length = 657

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/659 (50%), Positives = 447/659 (67%), Gaps = 6/659 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ PS DQ  AI  ++K I +  K Q LLGVTGSGKTFTMA +I+ +  P ++M
Sbjct: 1   MFELTSDFKPSPDQKQAIDGIVKSIQAGNKYQTLLGVTGSGKTFTMANIIKNLNMPTLIM 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FF +N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R
Sbjct: 61  SHNKSLCAQLYSEFKGFFANNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA+ SLL  +D I ++SVS  YG+G+   Y  M++ L++   + QKELL  LV   YKR
Sbjct: 121 LSASASLLSYDDVICIASVSANYGLGNPSEYVGMVLILELNMQISQKELLKKLVDMGYKR 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    R  FRV GD ++I+P++ ED A R+  FG+++E +  +  L  +K +++    +
Sbjct: 181 NDNFFDRADFRVNGDIVDIYPAYYEDEAIRLEFFGDELEAMYHYNVLENKKGKDLNKFIL 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  S +      L  A++ IK EL  RL   E E +L+EAQRL+QR+ +DLEML++TG C
Sbjct: 241 YPTSQFSVGETRLKKAIEGIKAELNERLAYFENENKLVEAQRLKQRVEFDLEMLQSTGMC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + +ENY+ +LTG   G+ P TLF+Y     +D L+ VDESHV++PQ  GM+ GD  RK T
Sbjct: 301 KGVENYALHLTGLKSGDTPYTLFDYFAIKNQDFLVIVDESHVSLPQFRGMFAGDRSRKQT 360

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL F+E+       + VSATP   ELE  +  I  QI+RPTGL+D
Sbjct: 361 LVDYGFRLPSALDNRPLMFDEFINKNCKFLFVSATPAPLELELSKENIFYQIMRPTGLLD 420

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EI+ +  QVE +YDE     ++  R+L+TVLTK+MAE+L++Y  E  ++V+YMHSE+
Sbjct: 421 PKIEIKDSENQVEILYDEAKKVIERNERVLITVLTKKMAEELSKYYLELGLKVKYMHSEI 480

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
             +ER EIIR LR G FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS T+LIQT+G
Sbjct: 481 DAIERNEIIRGLRSGAFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSTTALIQTMG 540

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN KV+L+A  +TKS+Q AID T  RR  Q  +NKKHNI P SVK  I E +   
Sbjct: 541 RAARNVNGKVLLFAKKVTKSMQEAIDTTNERRTLQEAYNKKHNITPTSVKRNIEESLKHE 600

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           L +           +   +  K+    +K LRKQM  AA NL FE+AA +RDEI +L++
Sbjct: 601 LEQGEI---YRKGKELEKMPAKERAKIVKELRKQMLEAAKNLEFEKAAMLRDEINKLRT 656


>gi|145219261|ref|YP_001129970.1| excinuclease ABC subunit B [Prosthecochloris vibrioformis DSM 265]
 gi|145205425|gb|ABP36468.1| Excinuclease ABC subunit B [Chlorobium phaeovibrioides DSM 265]
          Length = 689

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/678 (48%), Positives = 447/678 (65%), Gaps = 14/678 (2%)

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           +  +    F++ + Y P+GDQPAAIA L +G+ S    Q LLGVTGSGKT+TM+ VI   
Sbjct: 5   DGEERHDVFRLVSPYAPAGDQPAAIAALTEGLKSGSDYQTLLGVTGSGKTYTMSNVIANA 64

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            +P +VM+ NK LAAQLY E + FFP NAVEYF+SYYD+YQPEAY+P  D YI K+  IN
Sbjct: 65  GKPVLVMSHNKTLAAQLYGELRQFFPDNAVEYFISYYDFYQPEAYLPTIDKYIAKDLRIN 124

Query: 253 EQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           ++I+R+R  AT +LL  R D IVVSSVSCIYG+GS E +   I++L+ G   E+ E L  
Sbjct: 125 DEIERLRLKATSALLSGRKDVIVVSSVSCIYGLGSPEDWKSQIIELRTGMEKERDEFLQE 184

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           L+   + R D+    G FRV GD I++ P++ + +A RV  FG++IE +  F   +G+ +
Sbjct: 185 LIALHFVRDDVNPGPGKFRVRGDCIDLVPAY-DQIALRVEFFGSEIESLQSFDMESGEIL 243

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
            +     IY    +V     L TAM  I++EL  RL EL  + R +EA RLE+R  YDLE
Sbjct: 244 GSDAYAFIYPARQFVAEEEKLKTAMLAIEDELAGRLNELRADNRFVEAGRLEERTRYDLE 303

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M++  G C  IENYSR+++ R PGE P  L +Y PED L+ VDESHVT+PQI GMY GD 
Sbjct: 304 MMKELGYCSGIENYSRHISQRGPGERPYCLLDYFPEDYLVVVDESHVTLPQIRGMYGGDR 363

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK  L E+GFRLPS +DNRPLRF+E+  + P  + +SATPG  EL +  G++VEQ++RP
Sbjct: 364 SRKTILVEHGFRLPSALDNRPLRFDEFEEMAPQVVCISATPGDHELLRSGGVVVEQVVRP 423

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TGL+DPPVE+R  + Q++++  EI      G + L+  LTKRM+EDL ++  +  IR RY
Sbjct: 424 TGLLDPPVEVRPVKGQIDNLLAEIRRHVAGGHKALVMTLTKRMSEDLHDFFRKSGIRSRY 483

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HSE+K+LER++I+R+LR G+ DVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL
Sbjct: 484 LHSEIKSLERMQILRELRTGEIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSL 543

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           +Q  GRAARN    V+LYADTIT+SI+  +DET RRR  Q  +N +H I P+S+ + + +
Sbjct: 544 MQIAGRAARNAEGFVVLYADTITRSIREVLDETARRRTIQQAYNDEHGIVPRSIVKSVNQ 603

Query: 732 VIDPILLEDAAT------------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
           ++D   + DA                  +     SL+  +G A +  LR +M  AA  + 
Sbjct: 604 ILDTTGVADAEERYRRRRFGLVPKPERLLAGALESLTADEGLAMVAELRVEMQEAAVKME 663

Query: 780 FEEAARIRDEIKRLKSSP 797
           +E+AA +RDEI +L+   
Sbjct: 664 YEKAAYLRDEITKLEQGI 681


>gi|307565585|ref|ZP_07628065.1| excinuclease ABC, B subunit [Prevotella amnii CRIS 21A-A]
 gi|307345744|gb|EFN91101.1| excinuclease ABC, B subunit [Prevotella amnii CRIS 21A-A]
          Length = 681

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/677 (47%), Positives = 466/677 (68%), Gaps = 21/677 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  L +G+   E  Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FELTSTYKPTGDQPEAIRALTEGLKRGEHSQVLLGVTGSGKTFTVANVIANINKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPHNAVEYYVSYYDYYQPEAYIPTTDTYIEKDLAINDKIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  SLL  R D I+VSSVSCIYG+G   +  + ++ +K G  +++   L  LV   Y R
Sbjct: 123 SAVSSLLSGRKDVIIVSSVSCIYGMGGPAAMQENVIHIKKGQKMDRNYFLRQLVSSLYLR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ + RG FRV GD+++I  ++ ++V  R++ + ++I+ I E   +   ++ + +T +I
Sbjct: 183 NDMDLQRGYFRVKGDTVDIAMAYSDNV-LRITWWDDEIDSIEEVDSIAFHRLSSFDTYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A+  I+++L M++   ++ G  ++A+R+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTQQAISKIQDDLMMQIDHFKQLGENIKAKRIKERVEYDIEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G+ P  L ++ P+D LL +DESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRTAGQRPYCLLDFFPKDYLLVIDESHVSVPQISAMYGGDRARKTNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL+FEE+  +    I VSATP  +EL++  G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAALDNRPLKFEEFKSMIHQVIYVSATPADFELKEADGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ +EI + A++  RIL+T LTKRMAE+LTEYL   ++R  Y+HS+V +L
Sbjct: 422 DVRPSENQIDDLMNEILIRAERQERILVTTLTKRMAEELTEYLLNHDVRTAYIHSDVASL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++II DLR G +DVLVG+NLLREGLDIPE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIINDLRAGLYDVLVGVNLLREGLDIPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI------ 733
           RN+N KVI+YADTIT+S+Q  IDET RRR KQL++N++HNI P  + + I +++      
Sbjct: 542 RNINGKVIMYADTITESMQKTIDETMRRRIKQLKYNEEHNITPAQIVKTIKDILPTNKEG 601

Query: 734 -------------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
                            +ED  +   + D    S+SK++ +  +K+  + M  AA NL+F
Sbjct: 602 DNNFKNTTNKTINKKPHIEDIKSDTFASDPIIKSMSKEQLEKSIKNTTELMKQAAKNLDF 661

Query: 781 EEAARIRDEIKRLKSSP 797
            +AA+ RDEI RL+   
Sbjct: 662 LQAAQYRDEILRLQKEL 678


>gi|189345954|ref|YP_001942483.1| excinuclease ABC subunit B [Chlorobium limicola DSM 245]
 gi|238692185|sp|B3EFX1|UVRB_CHLL2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189340101|gb|ACD89504.1| excinuclease ABC, B subunit [Chlorobium limicola DSM 245]
          Length = 684

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/677 (48%), Positives = 448/677 (66%), Gaps = 16/677 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ + Y P GDQP AI QL++G+   ++ Q LLGVTGSGKTFT++ +I  + +P +VM+
Sbjct: 9   YRLVSSYSPKGDQPKAIEQLVEGVQRGDRWQTLLGVTGSGKTFTISNLIAQVGKPVLVMS 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E + FFP NAVEYF+SYYD+YQPEAY+P  D YI K+  IN++I+R+R 
Sbjct: 69  HNKTLAAQLYGELRQFFPDNAVEYFISYYDFYQPEAYLPALDKYIAKDLRINDEIERLRL 128

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVVSSVSCIYG+GS E +   I++L+ G   ++ + L  LV   Y R
Sbjct: 129 KATSSLLSGRRDVIVVSSVSCIYGLGSPEEWKAQIIELRPGMEKDRDQFLQELVSLHYVR 188

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+    G FRV GD I++ P+H E++A RV  FG +IE +  F   +G+ +   +   I
Sbjct: 189 DDMKPGPGKFRVRGDIIDLVPAH-EELAVRVEFFGPEIESLQTFDMQSGEVLGRDDYAFI 247

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +V     +  AM  I+ EL  RL EL  E RL+EA+RLE+R  YDLEM++  G C
Sbjct: 248 YPARQFVAGEEQMRHAMLAIENELAGRLNELRGENRLIEARRLEERTRYDLEMMKELGYC 307

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L GR PG+ P  L +Y PED L+ VDESHVT+PQI GMY GD  RK  L E
Sbjct: 308 SGIENYSRHLAGREPGDRPHCLLDYFPEDYLVVVDESHVTLPQIRGMYGGDRSRKTILVE 367

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRF+E+  L P  + VSATPG  ELE   G+IVEQ++RPTGL+DPPV
Sbjct: 368 HGFRLPSALDNRPLRFDEYVGLVPQVVCVSATPGDLELEYSGGVIVEQLVRPTGLLDPPV 427

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + Q++D+  EI     +G + L+  LTKRM+EDL +Y  +  IR RY+HSE+K+L
Sbjct: 428 EVRPVKGQIDDLLGEIRKHTARGFKALIMTLTKRMSEDLDDYFRKTGIRSRYLHSEIKSL 487

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+R+LR G+ DVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL+Q  GRAA
Sbjct: 488 ERMQILRELRTGEIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 547

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN    V+LYAD +T+SI+  +DET+RRR+ Q  +N++H I PQS+ + + +V++   + 
Sbjct: 548 RNSEGFVVLYADVLTRSIREVLDETSRRRKIQQAYNEEHGIVPQSIIKSVEQVLNTTGVA 607

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRK------------QMHLAADNLNFEEAARIR 787
           DA               ++     + +L              +M  AA  + +E+AA +R
Sbjct: 608 DAEERYRRKRFGLEPKPERLLSTLIDTLTAEECYSMAESLRLEMQEAALKMEYEKAAYLR 667

Query: 788 DEIKRL--KSSPYFQGL 802
           DEI +   +++   +G+
Sbjct: 668 DEITKFEHRANEAGKGI 684


>gi|296125069|ref|YP_003632321.1| excinuclease ABC, B subunit [Brachyspira murdochii DSM 12563]
 gi|296016885|gb|ADG70122.1| excinuclease ABC, B subunit [Brachyspira murdochii DSM 12563]
          Length = 685

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/659 (50%), Positives = 464/659 (70%), Gaps = 6/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++++ PSGDQ  AI  L+KG+ ++ K Q LLGVT SGKTFT+A VIE   RP +VM+
Sbjct: 6   FKLESNFKPSGDQVTAIESLVKGLENKNKYQTLLGVTASGKTFTIANVIEKANRPTLVMS 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP  D YI+K++S+N++IDR+R 
Sbjct: 66  HNKTLAAQLYRELKDFFPNNAVEYFVSYYDYYQPEAYVPAKDLYIDKDASVNDEIDRLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT SLLER D I+V+SVSCIYG+GS E Y ++ + ++     ++ E++  LV  QY+R 
Sbjct: 126 KATTSLLERRDVIIVASVSCIYGLGSPEDYRKLYISIEKDGEYDRDEIIEKLVSIQYERV 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
              + R  FRV GD++EI  ++ ++V  R+  FG+ +E I +  P+T +K+   + + IY
Sbjct: 186 KDVLERARFRVIGDTLEIMSAYSDEV-IRIEFFGDTVERIIKINPVTRKKLSEQDRVVIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT    L   +K I+EEL+ +  + + EG+L+EA+R+  R  YDLEML   G C 
Sbjct: 245 PAKHFVTGGDKLAAGIKLIEEELEEQYNKFKSEGKLVEAERIYGRTKYDLEMLREVGYCA 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR  G+ P  L +Y P+D L  +DESHV++PQI GM+ GD  RK TL +Y
Sbjct: 305 GIENYSRPLSGRKEGDRPACLIDYFPKDFLTIIDESHVSVPQIRGMFFGDRSRKETLVKY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+  L   TI +SATP  +EL++    +VEQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLFFEEFEKLTNDTIYISATPAEYELKKS-SKVVEQIIRPTGLLDPIIE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +     Q++ + +EI        RI +T LTK+MAEDLT+YL E  +R RY+HS+++T+E
Sbjct: 424 VYPIDGQIDRILEEIKKTISNNERIFITTLTKKMAEDLTKYLNENGVRTRYLHSDIQTVE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  L+ ILDADK GFLR+ T+LIQTIGRAAR
Sbjct: 484 RVEIIRDLRLGAFDVLVGINLLREGLDVPEVSLILILDADKTGFLRNTTTLIQTIGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI++AD+I+ ++++AIDET RRR+ Q+E+NK+HNI P+++ +KI ++I+     +
Sbjct: 544 NANGRVIMFADSISDAMKVAIDETERRRKIQMEYNKEHNITPKTIIKKIQDIIEREEKVE 603

Query: 741 AATT----NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +          + +     K++   ++K L K+M  A+D+L FE+A  IR++I +LK 
Sbjct: 604 TSYELHFDFRRFNERVKIDPKQQSDEYIKELEKEMKRASDSLEFEKAIEIREKINQLKQ 662


>gi|284166957|ref|YP_003405236.1| excinuclease ABC subunit B [Haloterrigena turkmenica DSM 5511]
 gi|284016612|gb|ADB62563.1| excinuclease ABC, B subunit [Haloterrigena turkmenica DSM 5511]
          Length = 687

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/673 (49%), Positives = 457/673 (67%), Gaps = 7/673 (1%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
            +       F +   + P+GDQP AI QL +G       Q LLGVTGSGKT T++ +IE 
Sbjct: 12  PDRPDVDRPFTVDAPFEPAGDQPEAIEQLAEGFRQGMDKQTLLGVTGSGKTNTVSWLIEE 71

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +Q+P +V+A NK LAAQLY EF+N FP NAVEYFVSYYDYYQPEAYV +TDTYI+K++SI
Sbjct: 72  IQKPTLVIAHNKTLAAQLYEEFRNLFPENAVEYFVSYYDYYQPEAYVEQTDTYIDKDASI 131

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           N++IDR+RHSATRSLL R D IVV+SVS IYG+G   +Y  M ++L++G+ V + ELL  
Sbjct: 132 NDEIDRLRHSATRSLLTREDVIVVASVSAIYGLGDPRNYVDMSMRLEVGEEVGRDELLKR 191

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV   Y+R D+   +GTFRV GD++EI+P +    A RV ++G++I+ + +  PL G+  
Sbjct: 192 LVDLNYERNDVDFTQGTFRVRGDTVEIYPMYG-RYAVRVELWGDEIDRMVKVDPLEGKTQ 250

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
            + + + ++   HY  P  TL  AM  I+ +L  R+   E++G ++ AQR+E+R ++DLE
Sbjct: 251 GDQQAVLVHPAEHYSIPETTLEEAMDEIRTDLDKRISYFERQGDMIAAQRIEERTSFDLE 310

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M++ TG C  IENYS YL+ R  G+ P TL +Y P+D L  VDESHVT+PQ+ G Y GD 
Sbjct: 311 MMQETGYCSGIENYSVYLSDRESGDAPYTLLDYFPDDFLTVVDESHVTLPQVRGQYAGDK 370

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK +L E GFRLP+  DNRPL FEE+      T+ VSATPG +E E+    IVEQI+RP
Sbjct: 371 SRKDSLVENGFRLPTAYDNRPLTFEEFQEKTNQTLYVSATPGDYEREESDQ-IVEQIVRP 429

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           T LVDP +E+  A  Q++D+ D I+    +  R L+T LTKRMAEDLTEYL E  + V Y
Sbjct: 430 THLVDPEIEVSPASGQIDDLMDRIDERIARDERTLVTTLTKRMAEDLTEYLEEAGVDVAY 489

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH E  TLER EIIR LRLG+ DVLVGINLLREGLDIPE  LVAILDAD+EGFLRS+T+L
Sbjct: 490 MHDETDTLERHEIIRSLRLGEIDVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTL 549

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           +QT+GRAARNVN +V+LYAD  + +++ AI+ET RRR  Q E+N++H + P ++++++ E
Sbjct: 550 VQTMGRAARNVNGEVVLYADDPSNAMESAIEETQRRRRIQQEYNEEHGLEPTTIEKEVGE 609

Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
              P      + T  +  + +    +++ + ++  L  +M  AA NL FE AA IRD I+
Sbjct: 610 TNLP-----GSKTETTQVSGREIEDEEEAERYIAELEDRMDEAASNLEFELAADIRDRIR 664

Query: 792 RLKSSPYFQGLDD 804
            ++      G +D
Sbjct: 665 EVREEFDLAGGED 677


>gi|183220252|ref|YP_001838248.1| excinuclease ABC subunit B [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189910370|ref|YP_001961925.1| excinuclease ABC subunit B [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|226695568|sp|B0SDE2|UVRB_LEPBA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|226695569|sp|B0SLS0|UVRB_LEPBP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|167775046|gb|ABZ93347.1| Helicase subunit of the DNA excision repair complex [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778674|gb|ABZ96972.1| UvrABC system protein B (UvrB protein; Excinuclease ABC subunit B)
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 664

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/659 (51%), Positives = 462/659 (70%), Gaps = 5/659 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F+M + +  +GDQ  AI  + K     +    L+GVTGSGKTFTMA+VI  +++P +
Sbjct: 1   MANFKMVSPFKAAGDQVKAIENIAKSFGEGKNKITLVGVTGSGKTFTMAEVITRVKKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQL+ EFK FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK+ S+NE+ID+
Sbjct: 61  ILSHNKTLAAQLFREFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDMSMNEEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R  AT SLLER+D I+VSSVSCIYG+GS E Y   +V L++GD +++ +++   +  QY
Sbjct: 121 LRLRATSSLLERDDVIIVSSVSCIYGLGSPEDYMNSVVMLQVGDKIDRDQIIRKFLHIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI   RG FRV GD+IEI PS+ E+   R+ +FG++I+ +S+  PLTG+    ++ +
Sbjct: 181 ARNDIDFSRGNFRVRGDTIEIMPSYQEE-GIRIELFGDEIDGLSKIDPLTGKVKIKLDRV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H++T  P +  AM+ IKEE+  +     K+G+ LEA+R+E R  YD+EML   G
Sbjct: 240 VVYPAKHFITSGPKIKDAMEKIKEEMAAQKEYFLKQGKHLEAERIESRTNYDMEMLLELG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIP-EDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
            C  IENYSR+LTGR  GE P  L +Y P +D LL +DESHVT+PQI GMY GD  RK T
Sbjct: 300 YCSGIENYSRHLTGRAEGERPACLLDYFPGKDFLLIIDESHVTLPQIGGMYAGDRSRKQT 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L E+GFRLPS +DNRPL F E+  + P T+ VSATP   EL + + +  EQIIRPTGL+D
Sbjct: 360 LVEFGFRLPSALDNRPLNFTEFEAMTPRTLYVSATPDQNELNKSEAVF-EQIIRPTGLLD 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P VE+R    Q+ED+ +EI L   Q  R+L+T LTK+M+EDLT+Y  E  +++ Y+HSE+
Sbjct: 419 PVVEVRPTTNQIEDLLNEIRLRINQKERVLITTLTKKMSEDLTDYYKEVGLKIAYLHSEI 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER EIIRDLR G +D +VGINLLREGLDIPE  LVAILDADKEGFLR+  SL+QTIG
Sbjct: 479 DTIERTEIIRDLRKGVYDCIVGINLLREGLDIPEVSLVAILDADKEGFLRNYKSLVQTIG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-DP 735
           RAARNVN K ILYAD +T SI+ A+ ET RRR  Q  HN+K  I PQ+++++I +++   
Sbjct: 539 RAARNVNGKAILYADRMTDSIKKAMSETERRRLIQEAHNEKMGITPQTIQKEIHDILPRE 598

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKS-LRKQMHLAADNLNFEEAARIRDEIKRL 793
           +  ED+    +    ++ +L K K K  L+  L+++M   A++++FE+AA  RD++  L
Sbjct: 599 MAEEDSKEEALKDLEKEFTLKKYKTKDKLREALKREMLRYANDMDFEKAAMFRDKMLAL 657


>gi|307720472|ref|YP_003891612.1| Excinuclease ABC subunit B [Sulfurimonas autotrophica DSM 16294]
 gi|306978565|gb|ADN08600.1| Excinuclease ABC subunit B [Sulfurimonas autotrophica DSM 16294]
          Length = 660

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/658 (52%), Positives = 456/658 (69%), Gaps = 8/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI  L   I    + Q L GVTGSGKT TMA+VIE ++ P I+M 
Sbjct: 7   FEVVSPYQPAGDQPKAIELLTDSILKGNRYQTLEGVTGSGKTHTMARVIENVKMPTIIMT 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEF+ FFP+N VEYFVSYYDYYQPEAY+PR D +IEK+S+IN++++R+R 
Sbjct: 67  HNKTLAAQLYSEFRQFFPNNHVEYFVSYYDYYQPEAYIPRQDLFIEKDSAINDELERLRL 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL  +D IV++SVS  YG+G  E Y  M+  L +GD + QK+LL  LV+  Y R 
Sbjct: 127 SATANLLSYDDVIVIASVSANYGLGDPEEYQNMVQSLAVGDEIAQKKLLLRLVEMGYSRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D     G  RV G+SI+I+P + E  A RV  FG++IE I  F  +  +K+   +++ IY
Sbjct: 187 DTYFDSGHIRVNGESIDIYPPYFEQEAIRVEFFGDEIEAIYTFDVIDNKKLEEHKSVTIY 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           A S +   +  ++ A+K I+EEL  RL   +KEG+LLE QRL+QR+ +DLEML+TTG C+
Sbjct: 247 ATSQFSVSQEKMSVAIKRIEEELDERLAYFQKEGKLLEYQRLKQRVEFDLEMLQTTGMCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENYSR LT + PGE P TL +Y     ++ L+ VDESHV++PQ  GMY GD  RK  L
Sbjct: 307 GIENYSRLLTNKKPGEAPFTLLDYFEQNHKEYLVIVDESHVSLPQYRGMYAGDRARKEVL 366

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL+ +E+    P  + VSATP  +ELE       EQIIRPTGL+DP
Sbjct: 367 VDYGFRLPSALDNRPLKADEYINKAPHYLFVSATPAEYELEMSVAK-AEQIIRPTGLLDP 425

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EI+ +  QVED++DEI     +  R+L+TVLTK+MAE LT+YL +  I+V+YMHS++ 
Sbjct: 426 VIEIKPSDNQVEDIHDEIKKTVVKDERVLITVLTKKMAEALTKYLADLGIKVQYMHSDID 485

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER +IIR LRLG+FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+T+L+QTIGR
Sbjct: 486 TIERNQIIRSLRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSETALVQTIGR 545

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
            ARN N +VILYA+ +T S+Q AID+TT RRE Q  +NK+H I P++ K  + E +    
Sbjct: 546 GARNENGRVILYANKMTGSMQRAIDKTTARREIQEAYNKEHGITPKTTKRTLDENLKLED 605

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             D          +Q  +   + KA +K L  +M  AA  LNFEEAAR+RDEI ++K 
Sbjct: 606 HGDIYQKY----KKQDKIPPSERKAMVKELSLKMKQAAKELNFEEAARLRDEITKIKK 659


>gi|223041263|ref|ZP_03611510.1| excinuclease ABC, B subunit [Campylobacter rectus RM3267]
 gi|222877471|gb|EEF12605.1| excinuclease ABC, B subunit [Campylobacter rectus RM3267]
          Length = 658

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/661 (49%), Positives = 452/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + PS DQ  A+A ++  + S  K Q LLGVTGSGKTFTMA VI  +  P +
Sbjct: 1   MKNFEISSKFSPSEDQARAVANIVASVRSGNKYQTLLGVTGSGKTFTMANVIRELNMPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M  NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SS+NE+++R
Sbjct: 61  IMTHNKSLAAQLYSEFKGFFPKNHVEYFISYYDYYQPEAYIPRQDLFIEKDSSVNEELER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D + V+SVS  YG+G+   Y  M+  L +GD + Q+ LL  LV   Y
Sbjct: 121 LRLSATASLLSFDDVVCVASVSANYGLGNPSEYQGMVAYLNVGDKINQRALLQKLVDMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR D+   RG FRV GD ++++P++  D A+R+  FG++IE +     L  +K  +++  
Sbjct: 181 KRNDVYFDRGDFRVNGDVVDVYPAYFNDEAFRIEFFGDEIETMYSLDVLENKKRHDLKKF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  S ++     L  A+K I+EEL  RL E  ++ +L+EAQRL+QR+ +DLEM+ +TG
Sbjct: 241 ILYPTSQFIVGENRLKIAIKQIEEELAERLKEFNEQSKLVEAQRLKQRVEFDLEMMSSTG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+LTG+ PGE P ++F+Y     +D L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 MCKGIENYARHLTGQKPGETPYSMFDYFELGGKDYLVIVDESHVSLPQFRGMYAGDRSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L EYGFRLPS +DNRPL+F+E+   R   + VSATP  +E+    G + EQI+RPTGL
Sbjct: 361 EVLVEYGFRLPSALDNRPLKFDEFINKRAKFLFVSATPNEYEINLSCGHVYEQILRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +EI+ +  QVE ++DE     ++  R+L+TVLTK+MAE+L+ Y  E  I+V+YMHS
Sbjct: 421 LDPLIEIKDSENQVEILFDEAKKTIERNERVLVTVLTKKMAEELSRYYTELGIKVKYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER EIIR LR G+FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT
Sbjct: 481 DIDAVERNEIIRGLRGGEFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN +V+++A  ITKS+Q A+D T  RR+ Q E+N+ H I P+S    I E + 
Sbjct: 541 MGRAARNVNGRVLMFAKKITKSMQEAMDTTLARRKMQEEYNRAHGITPRSASRNIEESLH 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                +  T  +   A    +   +  + +K LRKQM  AA  L FE+AA +RDEI +++
Sbjct: 601 ----VEDGTEILRKGANLEKMPAAERASIIKELRKQMLEAAAQLEFEKAAALRDEIAKIR 656

Query: 795 S 795
            
Sbjct: 657 K 657


>gi|323345701|ref|ZP_08085924.1| excision endonuclease subunit UvrB [Prevotella oralis ATCC 33269]
 gi|323093815|gb|EFZ36393.1| excision endonuclease subunit UvrB [Prevotella oralis ATCC 33269]
          Length = 678

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/674 (46%), Positives = 457/674 (67%), Gaps = 18/674 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L +G+   +K Q+LLGVTGSGKTFT+A VI  + +P ++++
Sbjct: 3   FKLTSKYAPTGDQPEAIKELTQGVERGDKAQVLLGVTGSGKTFTVANVIANVNKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN+ ID++R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPENAVEYYVSYYDYYQPEAYLPTTDTYIEKDLAINDDIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  +LL  R D +VVSSVSCIYG+G   + +  ++ +K G  +++ E L  LV   Y R
Sbjct: 123 SAVSALLSGRKDVVVVSSVSCIYGMGGPAAMTDSVISIKKGQVLDRNEFLRRLVNALYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++ +++  RV+ + ++I+ I E    T  ++ +    +I
Sbjct: 183 NDIDLQRGFFRVKGDTVDIAMAYSDNI-LRVTWWDDEIDNIEEVDSQTYHRMASFGEYQI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  ++    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTEQAVRMIQDDLVKQVDFFTELGDNIKAQRIKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PG+ P  L ++ P+D L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGREPGQKPYCLLDFFPKDYLMVIDESHVSVPQISAMYGGDRARKQNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPL+FEE++ +    I VSATP  +EL + +G++VEQIIRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLKFEEFHEMIHQVIYVSATPADYELNEAEGVVVEQIIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ DEI     +  R+L+T LTKRMAE+LTE+L +  I+  Y+HS++ TL
Sbjct: 422 EVRPSENQIDDLMDEILTRINRSERVLVTTLTKRMAEELTEFLLDHGIKANYIHSDIATL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIMNDLRAGAFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI+YADTIT+S++  IDETTRRR  QL++N++H+I PQ + + I  V+      
Sbjct: 542 RNVNGKVIMYADTITESMRRTIDETTRRRTLQLKYNEEHHITPQQIVKDIKSVLPTNNDN 601

Query: 740 ----------------DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
                           +  +   + D     +++++ +  + +    M  AA +L+F +A
Sbjct: 602 ATTITQSTSPIRYAYLEPDSGAFAADPIIQRMTREQLEKSIANTTALMKQAAKDLDFIQA 661

Query: 784 ARIRDEIKRLKSSP 797
           A+ RDEI RL+   
Sbjct: 662 AQYRDEIIRLQDQL 675


>gi|313676676|ref|YP_004054672.1| excinuclease ABC, b subunit [Marivirga tractuosa DSM 4126]
 gi|312943374|gb|ADR22564.1| excinuclease ABC, B subunit [Marivirga tractuosa DSM 4126]
          Length = 674

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/668 (49%), Positives = 466/668 (69%), Gaps = 14/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI  L KG+   E+ Q+LLGVTGSGKTFT+A ++E +Q+P +V++
Sbjct: 3   FKITSEYQPTGDQPKAIQALQKGVEEGEQDQVLLGVTGSGKTFTIANLVERVQKPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEA++P ++ YIEK+ SINE+I+++R 
Sbjct: 63  HNKTLAAQLYGEFKQFFPENAVEYFISYYDYYQPEAFIPSSNVYIEKDLSINEEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SAT +LL  R D IVV+SVSCIYGIG+ E + + I++L+ GD V + +LL + V   Y R
Sbjct: 123 SATSALLSGRRDVIVVASVSCIYGIGNPEEFGKNIIRLQQGDKVARNQLLFAFVDILYNR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                 RGTFRV GD+++IF ++  D A+R+  +G++IE I    P TG+KI   + I I
Sbjct: 183 TTAEFKRGTFRVKGDTVDIFVAYA-DFAYRIMFWGDEIESIQRIDPETGKKISEEKIISI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + +VT +  L+ A+K I++++  ++   E++GR LEA+RL++R  +D+EM+   G C
Sbjct: 242 FPANLFVTGKDVLHQAIKEIQDDMVEQVKFFERDGRFLEAKRLQERTEFDIEMMRELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +ENYSRY   R PG  P  L +Y P+D L+ +DESHVT+PQ+  MY GD  RK  L +
Sbjct: 302 SGVENYSRYFDRRTPGTRPFCLLDYFPDDFLMVIDESHVTVPQVRAMYGGDRARKINLVD 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YG+RLPS MDNRPL+F+E+  L   TI VSATP  +EL + +G +VEQ+IRPTGL+DP +
Sbjct: 362 YGYRLPSAMDNRPLKFDEFENLIGQTIFVSATPAEYELRKTEGSVVEQVIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ +EI+   +   R+L T LTKRMAE+L ++L    ++ RY+HSEV TL
Sbjct: 422 DVRPSGNQIDDLLEEIDERVKLNERVLCTTLTKRMAEELHKFLGRAGVKSRYIHSEVDTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EI+RDLRLG+FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR++ SL+QTIGRAA
Sbjct: 482 DRVEILRDLRLGEFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNQRSLVQTIGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   KVI+YAD IT S+Q A+DET RRR  Q  +N++H I P++V +    ++   +  
Sbjct: 542 RNEKGKVIMYADKITDSMQQAMDETNRRRAIQKAYNEEHGITPKTVFKSRESILGQTVAV 601

Query: 740 DA------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           D+              T+++ D     + K      + + +K+M  AA  L+F EAAR+R
Sbjct: 602 DSKKTSQKKYYAGIEETSVAADPVVQYMDKTGLDKMISATKKKMEKAAKELDFIEAARLR 661

Query: 788 DEIKRLKS 795
           DE + L+ 
Sbjct: 662 DEWQELQK 669


>gi|225619311|ref|YP_002720537.1| excinuclease ABC subunit B [Brachyspira hyodysenteriae WA1]
 gi|225214130|gb|ACN82864.1| excinuclease ABC, B subunit [Brachyspira hyodysenteriae WA1]
          Length = 682

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/659 (50%), Positives = 461/659 (69%), Gaps = 6/659 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++++ PSGDQ  AI  L+KG+ +  K Q LLGVT SGKTFT+A VIE   RP +VM+
Sbjct: 3   FKLESNFKPSGDQVTAIDSLVKGLENNNKYQTLLGVTASGKTFTIANVIEKANRPTLVMS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP  D YI+K++S+N++IDR+R 
Sbjct: 63  HNKTLAAQLYRELKDFFPNNAVEYFVSYYDYYQPEAYVPAKDLYIDKDASVNDEIDRLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT SLLER D I+V+SVSCIYG+GS E Y ++ + ++     ++ E++  LV  QY+R 
Sbjct: 123 KATTSLLERRDVIIVASVSCIYGLGSPEDYRKLYIAIEKDGEYDRDEIIEKLVSIQYERV 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
              + R  F+V GD+IEI  ++ ++V  RV  FG+ +E I +  P+T QK+   + + IY
Sbjct: 183 KDVLERARFKVIGDTIEIMSAYSDEV-IRVEFFGDTVERIIKINPITRQKLAEQDRVVIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT    L   +K I+EEL  +  + + EG+L+EA+R+  R  YDLEML   G C 
Sbjct: 242 PAKHFVTGGDKLAAGIKLIEEELDEQYNKFKSEGKLVEAERIYGRTKYDLEMLREVGYCA 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR L+GR  G+ P  L +Y PED L  +DESHV++PQI GM+ GD  RK TL +Y
Sbjct: 302 GIENYSRPLSGRKEGDRPACLIDYFPEDFLTIIDESHVSVPQIRGMFFGDRSRKETLVKY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL FEE+  L   TI +SATP  +EL++    +VEQIIRPTGL+DP +E
Sbjct: 362 GFRLPSALDNRPLYFEEFEKLTHDTIYISATPAEYELKKS-SQVVEQIIRPTGLLDPIIE 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +     Q++ + +EI        RI +T LTK+MAEDLT+YL E  +R RY+HS+++T+E
Sbjct: 421 VYPIDGQIDRILEEIKKTVANNERIFITTLTKKMAEDLTKYLNENGVRTRYLHSDIQTVE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG FDVLVGINLLREGLD+PE  L+ ILDADK GFLR+ T+LIQTIGRAAR
Sbjct: 481 RVEIIRDLRLGAFDVLVGINLLREGLDVPEVSLILILDADKTGFLRNTTTLIQTIGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI++AD+I+ ++++AI+ET RRR  Q+E+NKKHNI P+++ +KI ++I+     +
Sbjct: 541 NANGRVIMFADSISDAMKVAIEETERRRTIQMEYNKKHNITPKTIIKKIQDIIEREEKVE 600

Query: 741 AATT----NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +          + +     ++K   ++K L K+M  A+D+L FE+A  IR++I +LK 
Sbjct: 601 TSYELHFDFRRFNERVKIDPEQKSDDYIKELEKEMKKASDSLEFEKAIEIREKINQLKQ 659


>gi|88607428|ref|YP_505866.1| excinuclease ABC subunit B [Anaplasma phagocytophilum HZ]
 gi|123494148|sp|Q2GID5|UVRB_ANAPZ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|88598491|gb|ABD43961.1| excinuclease ABC, B subunit [Anaplasma phagocytophilum HZ]
          Length = 653

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/656 (54%), Positives = 475/656 (72%), Gaps = 8/656 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +++  +GDQP AI +L +GI    + Q+LLGVTGSGKTFTMA VIE  Q PA+
Sbjct: 1   MRHFKITSEFDAAGDQPEAIRKLSEGIERGVREQVLLGVTGSGKTFTMASVIEKRQCPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQLY E + FFP+NAVEYFVSYYDYYQPEAY+P +D YIEK++ INE+ID 
Sbjct: 61  IVAHNKTLAAQLYEEMRMFFPNNAVEYFVSYYDYYQPEAYIPHSDVYIEKDALINEKIDM 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSATRS+LER D IVV+SVSCIYG+GS E YS+M + L IG  ++  +L   LV+ QY
Sbjct: 121 LRHSATRSILERRDVIVVASVSCIYGLGSPELYSEMTIPLSIGMQIDLCQLKEKLVELQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           K       RGTF V GD + IFPSH ED  WR+SMFG+ IE I E     G  + N+E +
Sbjct: 181 K-SGSQCERGTFSVKGDIVTIFPSHHEDHVWRISMFGDVIESIQEVDNNLGIAVANLEKV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           K++ NSHYVTPRPTL  A+  I+EEL+  +I   K  +++EA+R+ +R  +D+EM++ TG
Sbjct: 240 KVFPNSHYVTPRPTLMQALSRIEEELQECVINYRKNNKIIEAERILERTKFDIEMMKETG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           +C+ IENYSRYL G+  GEPP TL +Y+P DSL+F+DESH+TIPQI  MY GD  RKA L
Sbjct: 300 TCKGIENYSRYLCGKAAGEPPNTLLDYLPVDSLMFIDESHITIPQIRSMYNGDRVRKANL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             +GFRLPS +DNRPL FEEW   + T + VSATPG +E E+  G++VEQ+IRPTGLVDP
Sbjct: 360 ITHGFRLPSALDNRPLTFEEWESRKTTLVYVSATPGKYETERTSGVVVEQLIRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              ++ A  Q+ DV +E      +G R+L+T LTK+MAE+L+E++ E  I+V Y+HS+VK
Sbjct: 420 ICIVKKASGQIADVVNESQATISEGYRVLVTALTKKMAENLSEHMREIGIKVAYLHSDVK 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++II  LR G+ DVL+G+NLLREGLDIPEC LV ILDADKEGFLRS+TSL+QTIGR
Sbjct: 480 TLERMDIIAQLRTGEIDVLIGVNLLREGLDIPECALVCILDADKEGFLRSETSLVQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+N +VILYAD +TKS++ AIDET RRR  Q  +NK H I P+S+ + +        
Sbjct: 540 AARNMNGRVILYADRVTKSMKAAIDETNRRRAVQESYNKAHGITPKSISKSV-----ATS 594

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L+D  T   +  ++  S S    +  +  L+K+M L A+NL FE+A  IR++I +L
Sbjct: 595 LKDRITVKGTKGSK--SKSAAVTEEDIIKLQKEMLLHAENLEFEKALEIRNQINKL 648


>gi|320535927|ref|ZP_08035995.1| excinuclease ABC subunit B [Treponema phagedenis F0421]
 gi|320147231|gb|EFW38779.1| excinuclease ABC subunit B [Treponema phagedenis F0421]
          Length = 662

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/660 (50%), Positives = 450/660 (68%), Gaps = 5/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +DY PSGDQP AI QL  G+ + ++ Q L GVTGSGKTFTMA +I+A+Q+P +
Sbjct: 1   MKQFELISDYAPSGDQPEAIRQLADGVLAGDRFQTLKGVTGSGKTFTMANIIQAVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LAAQLY EFK FFPHNAVEYFVSYYDYYQPEAYVP  D YIEK++SIN++IDR
Sbjct: 61  IISHNKTLAAQLYREFKGFFPHNAVEYFVSYYDYYQPEAYVPARDLYIEKDASINDEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SL+ER D IVVS+VSCIYG+G  ES+  + + ++ G +V+ + L   LV  QY
Sbjct: 121 LRLSATFSLMERRDVIVVSTVSCIYGLGLPESWRDLRITIEKGQTVDMENLKRQLVSLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D  + RG FR+ GD +E+FP+++E+ A+R+     +I  I  F+P++G+     E +
Sbjct: 181 ERNDAVLERGRFRLKGDVLEVFPAYMEE-AYRIEFDWEEIVRIRRFHPISGEISTEFEEL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+V     + TA+  I++EL  RL  L  + +LLEA+RL+ R  YD+EML   G
Sbjct: 240 SIYPAKHFVLKEDAIPTALVRIRKELNDRLAVLRAQNKLLEAERLKTRTEYDIEMLSEMG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYS  +  R PGEPP TLF Y P+D LLF+DESHVT PQ+  MY GD  RK  L
Sbjct: 300 YCPGIENYSAPIANRKPGEPPATLFHYFPKDFLLFMDESHVTFPQVGAMYEGDRSRKQNL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLP  +DNRPL+  E+  +    I VSATPG  E++     IVEQ+IRPTGL+DP
Sbjct: 360 VDFGFRLPCALDNRPLKINEFESMLNQAIFVSATPGPKEIQYS-TRIVEQLIRPTGLLDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+  +  Q+ED+Y EI      G R L+  LTK+MAEDLT+YL    ++V+Y+HSE++
Sbjct: 419 ILEVHKSEGQMEDIYREIQKRIVVGERSLILTLTKKMAEDLTDYLLGLGLKVKYIHSEIE 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EI++ LR G+FDVL+GINLLREG+D+PE   + ILDADK GFLRS TSLIQ +GR
Sbjct: 479 TIERVEILKGLRAGEFDVLIGINLLREGIDLPEVSFIGILDADKIGFLRSTTSLIQIVGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---D 734
           AARN N KVI+Y+D I+ +++  I ET RRR  Q  +N  H I P+++K+ I +++   +
Sbjct: 539 AARNENGKVIMYSDRISDAMRETITETERRRSIQQAYNAAHGITPKTIKKAIEDILVREN 598

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            +  E A      +      L     K  +K L +QM   AD L FEEAA +RD+I+ +K
Sbjct: 599 ELKKEAAQAETEPLINSFNLLVPADRKKLIKKLEQQMSAFADELRFEEAAAVRDKIEEIK 658


>gi|282879576|ref|ZP_06288307.1| excinuclease ABC, B subunit [Prevotella timonensis CRIS 5C-B1]
 gi|281306524|gb|EFA98553.1| excinuclease ABC, B subunit [Prevotella timonensis CRIS 5C-B1]
          Length = 678

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/672 (46%), Positives = 448/672 (66%), Gaps = 18/672 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL  G+   +  Q+LLGVTGSGKTFT+A VI+ +Q+P ++++
Sbjct: 3   FKLTSKYQPTGDQPQAIQQLTDGVRRGDPAQVLLGVTGSGKTFTVANVIQNIQKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAVEY+VSYYDYYQPEAY+P +D YIEK+ SIN++IDR+R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPENAVEYYVSYYDYYQPEAYLPSSDLYIEKDLSINDEIDRLRL 122

Query: 261 SATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  +LL     +VV S   CIYG+G   + +  I+ ++ G  +++ + L  LV+  Y R
Sbjct: 123 SAVSALLSGRSDVVVVSSVSCIYGMGGPSAMTNSIISIQKGQHIDRNDFLRKLVEALYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++  +V  R++ + ++IE I E    T  ++ + E   I
Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYSNNV-LRITWWDDEIETIEEVDSTTFHQLESFEEYHI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A+  I+ +L  ++   E+ G  L+AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTSKEQTERAIHEIQNDLVKQIDYFEEIGDQLKAQRIKERVEYDMEMIKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  GE P  L ++ P+D L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRQAGERPYCLLDFFPKDYLMVIDESHVSVPQISAMYGGDRARKRNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE+  +    I VSATP  +EL++ +G++VEQ+IRPTGL+DP +
Sbjct: 362 YGFRLPAAFDNRPLRFEEFQDMLHQVIYVSATPADYELQEAEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R +  Q++D+ DEI    ++G R+L+T LTKRMAE+LTEYL   ++R  Y+HS++ TL
Sbjct: 422 DVRPSENQIDDLLDEILQRTERGERVLVTTLTKRMAEELTEYLLNHDVRANYIHSDIGTL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 ERVKIMNDLRAGMFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++ KVI+YADTIT S++  IDET RRR  QL++N++H+I P  + + I   +     +
Sbjct: 542 RNIHGKVIMYADTITDSMRKTIDETARRRSIQLKYNEEHHITPTQIVKDIKNALPTAKEK 601

Query: 740 DAATTNISIDAQQLSLSK----------------KKGKAHLKSLRKQMHLAADNLNFEEA 783
                  ++ AQQ  +                  ++ +  +      M  AA +L+F +A
Sbjct: 602 MKEKRYSTVAAQQAYMEPLGGAFAADPIVQQMTHEQLEKSIADTTAMMKQAAKDLDFLQA 661

Query: 784 ARIRDEIKRLKS 795
           A+ RDEI RL++
Sbjct: 662 AQYRDEIIRLQT 673


>gi|269119848|ref|YP_003308025.1| excinuclease ABC subunit B [Sebaldella termitidis ATCC 33386]
 gi|268613726|gb|ACZ08094.1| excinuclease ABC, B subunit [Sebaldella termitidis ATCC 33386]
          Length = 657

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/650 (52%), Positives = 477/650 (73%), Gaps = 5/650 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +D+ P+GDQP AI ++++ + +    Q+LLGVTGSGKTFT+A VIE + RPA++MA
Sbjct: 3   FKIHSDFKPTGDQPEAIEKIVENLENGVSDQILLGVTGSGKTFTVANVIERLNRPALIMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY+E+K FFP NAVEYFVSYYDYYQPEAYV  TDTYIEK+SSIN++ID++RH
Sbjct: 63  PNKTLAAQLYNEYKQFFPDNAVEYFVSYYDYYQPEAYVAVTDTYIEKDSSINDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R D I+V+SVS IYG+GS E+Y +  + + +    ++ +L+  LV  +Y+R 
Sbjct: 123 AATAALLNRRDVIIVASVSAIYGLGSPEAYKKRSIPIDVSVGFDRNDLILRLVDLRYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD ++++P++ +D  +R   FG+D+E+ISE   LTGQKIR ++ I I 
Sbjct: 183 DYAFERGKFRVNGDVVDLYPTY-QDTGYRFEFFGDDLEDISEINTLTGQKIRKIQRISIM 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY++   +  T  + IK EL  R+    K+  LLEAQR++QR  YDLEM+   G C+
Sbjct: 242 PATHYLSTEDS-ETMFREIKSELDERIEFFNKKNMLLEAQRIKQRTEYDLEMIAEIGFCK 300

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYLTG+ PGE P TL +Y P+D ++F+DESH+++PQI+GMY+GD  RK +L + 
Sbjct: 301 GIENYSRYLTGKGPGETPDTLIDYFPKDLVVFLDESHISVPQINGMYKGDRARKQSLIDN 360

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRP+RFEE+    P  + +SATPG +E+EQ +  ++EQ++RPTG+V+P +E
Sbjct: 361 GFRLPSAFDNRPMRFEEFFEKTPQVVYISATPGDYEMEQSKSEVIEQLVRPTGIVEPTIE 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + Q++D+ DEI L  ++G R+L+T LTK+MAE+LT+Y  E  ++V+YMHS+++TLE
Sbjct: 421 VRPTKNQIDDLMDEIKLRVEKGERVLVTTLTKKMAEELTDYYLEYGLKVKYMHSDIETLE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEIIR LR G+FDVLVGINLLREGLDIPE  LVAIL+ADKEG+LRS+ SLIQT+GRAAR
Sbjct: 481 RIEIIRGLRRGEFDVLVGINLLREGLDIPEVALVAILEADKEGYLRSRRSLIQTMGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV  KVILYAD IT S++ A+DE  RRRE Q+E+NK+HNINP+++  KI + I    + +
Sbjct: 541 NVEGKVILYADRITGSMKEAMDEVERRREIQIEYNKEHNINPKTIVSKISDSIVDYEIGN 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
               +      +     K  +  ++ L K++   A+ LNFE+A   RDE+
Sbjct: 601 EEKVDRIKKIYKDK---KDIEKEIRILEKEIRKLAEELNFEKAIAKRDEM 647


>gi|152990079|ref|YP_001355801.1| excinuclease ABC subunit B [Nitratiruptor sp. SB155-2]
 gi|151421940|dbj|BAF69444.1| excinuclease ABC, B subunit [Nitratiruptor sp. SB155-2]
          Length = 676

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/680 (51%), Positives = 469/680 (68%), Gaps = 27/680 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F+M   Y P+GDQP AI +L   I    + Q LLGVTGSGKT+TMAK+IE +Q P +
Sbjct: 1   MAKFEMAAPYPPAGDQPEAIEKLSLSIKEGNRYQTLLGVTGSGKTYTMAKIIEKLQMPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M  NK LAAQL+SEFK+FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SSIN++++R
Sbjct: 61  IMTHNKTLAAQLFSEFKHFFPKNHVEYFISYYDYYQPEAYLPRQDLFIEKDSSINDELER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLLE +D IVV+SVS  YG+G+   Y +M+ + + G+ + Q+ELL  L++  Y
Sbjct: 121 LRLSATASLLEYDDVIVVASVSANYGLGNPNEYRKMVFKFEEGNEIGQRELLFRLLEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR D    RG FRV GD ++I+P++ ED A RV  FG++IE I  F PLT +K++ + TI
Sbjct: 181 KRNDKFFDRGDFRVSGDVVDIYPAYFEDEAIRVEFFGDEIESIYYFDPLTNKKLQELHTI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA + ++  +  L  A+K I++EL+ RL    KE RL+E QRL+QR  +DLEMLETTG
Sbjct: 241 TLYAANQFIVGQNRLAEAIKSIEKELEERLDYFLKENRLVEYQRLKQRTEFDLEMLETTG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494
           +C+ IENYSR+LTG+ PGE P +L +Y     +  L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 TCKGIENYSRHLTGKKPGETPYSLIDYFEAKGQPYLIIVDESHVSLPQFRGMYAGDRSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L EYGFRLPS +DNRPL+FEE+    P  + VSATPG  ELE    ++ EQIIRPTGL
Sbjct: 361 EVLVEYGFRLPSALDNRPLKFEEFINKAPHYLFVSATPGELELELS-SVVAEQIIRPTGL 419

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP VE+  +R QVE ++DEI     +G ++L+T LTK+MAEDL++Y  +  I+VRYMHS
Sbjct: 420 LDPLVELAPSRHQVEILHDEIKKEIAKGNKVLVTTLTKKMAEDLSKYYADLGIKVRYMHS 479

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER ++IR LR G+FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT
Sbjct: 480 EIDAIERNQLIRGLRRGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQT 539

Query: 675 IGRAARNVNSKVILYADTITK-------------------SIQLAIDETTRRREKQLEHN 715
           +GRAARN   +V+++AD I K                   S+Q AI  T  RR+KQ   N
Sbjct: 540 MGRAARNAEGRVLMFADKIEKRVTLESLEDLKAVEDKITGSMQRAIKTTIARRQKQDSFN 599

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAA 775
           K H I P++V  ++ E +    L+        +D     L  K+ +  +K LRK MH AA
Sbjct: 600 KAHGITPKTVSRRLDENLKSEDLDKLYEKRKKMD----KLPAKEKEKIIKELRKAMHEAA 655

Query: 776 DNLNFEEAARIRDEIKRLKS 795
             L FEEAAR+RDEI+++K+
Sbjct: 656 KKLEFEEAARLRDEIEKIKA 675


>gi|270340125|ref|ZP_06007127.2| excision endonuclease subunit UvrB [Prevotella bergensis DSM 17361]
 gi|270332472|gb|EFA43258.1| excision endonuclease subunit UvrB [Prevotella bergensis DSM 17361]
          Length = 685

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/676 (46%), Positives = 455/676 (67%), Gaps = 17/676 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AIA+L +G+   +  Q+LLGVTGSGKTFT+A VI  + +P +V++
Sbjct: 11  FKLTSQYEPTGDQPQAIARLTEGVLHGDPAQVLLGVTGSGKTFTVANVIANVGKPTLVLS 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP NAV+Y+VSYYDYYQPEAY+P TD YIEK+ SIN++ID++R 
Sbjct: 71  HNKTLAAQLYEEMKGFFPDNAVDYYVSYYDYYQPEAYLPTTDLYIEKDLSINDEIDKLRL 130

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            A   LL  R D IVVSSVSCIYG+G      Q I+ +K G  +++ E L  LV   Y R
Sbjct: 131 RAVSDLLSGRKDVIVVSSVSCIYGMGGPVGMQQSIISIKRGQRLDRNEFLRRLVNALYTR 190

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ + RG F V GD++ I  ++  D   RV+ + ++I+ I E  P+T + +++    +I
Sbjct: 191 NDVDLQRGFFSVKGDTVNIAMAYS-DHILRVTWWDDEIDSIEEADPVTMRSLQSFAEYQI 249

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L  ++   ++ G  ++AQR+++R+ YDLEM++  G C
Sbjct: 250 YPANLFVTSKDQTEIAIRNIQDDLVDQIEFFKEAGDDIKAQRIKERVEYDLEMIKELGHC 309

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR PG+ P  L ++ P+D L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 310 SGIENYSRYFDGRQPGQRPYCLLDFFPDDFLIVIDESHVSVPQISAMYGGDRARKRNLVE 369

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+  DNRPLRFEE++ +    I VSATP ++EL++ +G++VEQ+IRPTGL+DP +
Sbjct: 370 YGFRLPAAFDNRPLRFEEFHEMAKQVIYVSATPANYELQEAEGVVVEQLIRPTGLLDPEI 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R +  Q++D+  EI +  ++  RIL+T LTKRMAE+LTEYL   ++R  Y+HS+V TL
Sbjct: 430 VVRPSENQIDDLLHEIQIRCERDERILVTTLTKRMAEELTEYLLNNDVRANYIHSDVATL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 490 DRVQIMNDLRAGLYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN KVI+YADTIT+S+Q  IDET RRR  Q+++N  + I P+ + + I   +     E
Sbjct: 550 RNVNGKVIMYADTITESMQRTIDETARRRSIQMKYNADNGITPRQIVKDIKGTLPNARGE 609

Query: 740 DA---------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           +                 +   + D   L +++ + +  + + ++ M  AA  L+F +AA
Sbjct: 610 EYKSAGDMGKQRVYLEPDSAAFAADPIVLRMTRPELEKSIANTKQLMEQAAKALDFIQAA 669

Query: 785 RIRDEIKRLKSSPYFQ 800
           + RDEI RL++    +
Sbjct: 670 QYRDEILRLQAQLELK 685


>gi|196230715|ref|ZP_03129576.1| excinuclease ABC, B subunit [Chthoniobacter flavus Ellin428]
 gi|196225056|gb|EDY19565.1| excinuclease ABC, B subunit [Chthoniobacter flavus Ellin428]
          Length = 733

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/710 (47%), Positives = 459/710 (64%), Gaps = 58/710 (8%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P GDQ  AIA+L K I +  + Q LLGVTGSGKTFT A VI+ +++P +V++
Sbjct: 3   FQLASRYQPKGDQAQAIAKLTKSIEAGNRHQTLLGVTGSGKTFTAANVIQNVEKPTLVIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSY+DYYQPEAY+PRTDTYIEK+SSINE+I+R+R 
Sbjct: 63  HNKTLAAQLYSEFKQFFPENAVEYFVSYFDYYQPEAYIPRTDTYIEKDSSINEEIERLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T SLL R D IV++SVSCIYG+GS E Y  M++ +K+G  + ++  LS LV   Y+R 
Sbjct: 123 STTSSLLSRRDVIVIASVSCIYGLGSPEDYMNMLLTIKVGQQISREAALSKLVDMLYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DIG  RG FRV GD++E+ P++L++ A R+  FG++++ I+ F PLTG     +  I +Y
Sbjct: 183 DIGFNRGKFRVRGDTVEVHPANLDEEAIRIEFFGDEVDRITRFDPLTGHGHEQLTMITLY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               +VTP   +  AM  IKEEL  R+I  EK G LLEAQR++ R  YDLEM++  G C 
Sbjct: 243 PAKQFVTPADKMRRAMGTIKEELAERIIHFEKHGHLLEAQRIKMRTEYDLEMMQEMGFCS 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PG  P TL ++ P+D LL +DESH TIPQ+ GMY GD  RK+ L +Y
Sbjct: 303 GIENYSRHLSGRPPGSRPFTLLDFFPKDYLLVIDESHATIPQVGGMYEGDKSRKSVLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC----------QGIIVEQI-- 548
           GFRLPS +DNRPLRF E+  +    + +SATP  +E++            +    EQ+  
Sbjct: 363 GFRLPSALDNRPLRFPEFMEMTGQALYISATPAEFEIKNSIVGNTSYIPHKRQQSEQVGK 422

Query: 549 ------------------------------------------IRPTGLVDPPVEIRSART 566
                                                     IRPTGL+DP + IR  + 
Sbjct: 423 EEDVPFARGRCVAGAAALGAPNTPVEEFDVHTPGRPLVVEQIIRPTGLLDPRITIRPLKG 482

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q+++  +      +   R+L+T LTKR AEDL++YL +  ++VRY+HS++ T+ER+EI+R
Sbjct: 483 QIDETLELCRQRIEVKERVLITTLTKRTAEDLSDYLRDVGLKVRYLHSDIDTIERVEILR 542

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
            LR  +FD+LVGINLLREGLD+PE  LV ILDADKEG+LRS+TSLIQT GRAAR+VN +V
Sbjct: 543 ALRAAEFDILVGINLLREGLDLPEVSLVCILDADKEGYLRSQTSLIQTAGRAARHVNGEV 602

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
            L+ADT+TKS++  +  T  RR +Q+ +N+KH I P+SV+  + E +  IL       ++
Sbjct: 603 YLFADTVTKSMEALLAITEYRRARQIAYNEKHGITPRSVQRAVQESLHTILKGRELEESV 662

Query: 747 SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +              L+ L ++M +AA+NL +E+AA +RD+I  LK+ 
Sbjct: 663 VREGGGDF----SLTETLRELEQEMMIAANNLEYEKAALLRDQIAELKAG 708


>gi|261415175|ref|YP_003248858.1| excinuclease ABC, B subunit [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371631|gb|ACX74376.1| excinuclease ABC, B subunit [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 732

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/721 (47%), Positives = 463/721 (64%), Gaps = 42/721 (5%)

Query: 114 NPLLKNGKIWTPHRSWSINNHSKDITF----FQMQTDYHPSGDQPAAIAQLLKGIHSREK 169
           +P  K      P          +        F + + Y  +GDQP AI +L +G  + E+
Sbjct: 11  DPYAKPIAKPLPPSKSLPGKLKQFQAPTRADFDLVSPYGAAGDQPKAIEELTEGFKNGEQ 70

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
            Q LLGVTGSGKTFTMA VI+ + +P +++  NK LAAQLY EFK+FFP+NAVEYFVSYY
Sbjct: 71  FQTLLGVTGSGKTFTMANVIKNVGKPTLILTHNKTLAAQLYQEFKSFFPNNAVEYFVSYY 130

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
           DY+QPEAY+P TDT+IEK++SIN++ID++R  AT +LL R D I+V+SVSCIYG+GS   
Sbjct: 131 DYFQPEAYIPHTDTFIEKDASINDEIDKLRLRATANLLTRRDVIIVASVSCIYGLGSPSE 190

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           Y  ++V++K GD  ++ ++L  LV  QY R D  + RG+FRV GD IE+ PS+ ED   R
Sbjct: 191 YFDLMVRIKKGDIYDRDKILRDLVHIQYSRNDFSLDRGSFRVRGDVIEVHPSYDED-GLR 249

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           + +FG++++ +  F  +TG+ I+ VE + I    H+VT        ++ I++EL  RL E
Sbjct: 250 IELFGDEVDRLYRFNIVTGEVIKEVEELTIAPAKHFVTKEENRAGMLQRIQKELTDRLAE 309

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
           L+KEG++LE+ RL  R  YD+EML  TG C  IENYSR +  R PG  P TL +Y  +D 
Sbjct: 310 LDKEGKVLESARLSSRTRYDMEMLRETGMCNGIENYSRIIEDRAPGTRPFTLIDYFGDDW 369

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP-TTIVV 528
           LL +DESHV+IPQ+ GM  GD  RK TL +YGFRLP  +DNRP+ F E+  + P   + V
Sbjct: 370 LLMIDESHVSIPQVGGMAEGDKSRKTTLVQYGFRLPCALDNRPMNFAEFEYMYPKQVLFV 429

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SATPG +EL++  G++ EQI RPTGL+DP +E+   + Q++ +   I    + G R+L+T
Sbjct: 430 SATPGDYELKKTNGVVTEQINRPTGLLDPKIELFPIQGQMDVLLYRIEEVVKNGDRVLVT 489

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
            LTK+MA+DLTE+  E  +R +Y+HS++KTLER E+IR LR G++DVLVGINLLREGLD+
Sbjct: 490 TLTKKMAQDLTEFFIEAGVRAKYLHSDIKTLERHELIRGLRSGEYDVLVGINLLREGLDL 549

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           PE  +VAILDADKEGFLR+  SLIQT+GRA+RNVN  V+L+AD +T+S+Q AIDET RRR
Sbjct: 550 PEVSMVAILDADKEGFLRNYRSLIQTMGRASRNVNGTVLLFADNMTESLQKAIDETNRRR 609

Query: 709 EKQLEHNKKHNINPQSVKEKIME---VIDPI----------------------------- 736
             Q E NK+H I P+SV  KI E   +IDP+                             
Sbjct: 610 GLQEEFNKEHGITPKSVTRKIEEDLRIIDPLGDIGDDTTDSEDDWKDKPGIRPMEPLQPS 669

Query: 737 ----LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
                 +D      +          K  ++ L  L +QM  AA  L+FEEAARIRD I+ 
Sbjct: 670 NYRRKTKDERRKKAAAPGAPPDKPSKASESKLADLERQMKEAAARLDFEEAARIRDIIRS 729

Query: 793 L 793
           L
Sbjct: 730 L 730


>gi|289522996|ref|ZP_06439850.1| excinuclease ABC subunit B [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503539|gb|EFD24703.1| excinuclease ABC subunit B [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 674

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/666 (49%), Positives = 450/666 (67%), Gaps = 8/666 (1%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    F++   + P+GDQP AI +L  G+    + Q LLGVTGSGKTFT+A VIE +QRP
Sbjct: 6   EGQKKFELVAPWKPAGDQPLAIEKLALGLKQGTRYQTLLGVTGSGKTFTIANVIEKIQRP 65

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LAAQLYSEFK+FFP+N V YFVSYYDYYQPEAY+P  D YIEK++SINE+I
Sbjct: 66  VLVIAHNKTLAAQLYSEFKDFFPNNEVHYFVSYYDYYQPEAYLPSQDIYIEKDASINERI 125

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           +++R + T++LLER D IVV+SVSCIYG+G  +SY + I +  +GD++ +K+    L+  
Sbjct: 126 EKLRLATTKALLERRDVIVVASVSCIYGLGRRKSYEEAIFRFSVGDNINRKDFFKRLLDN 185

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y+R D  +  GTFR  GD +E++P++  D A RV  F ++IE I E  PL G+ I   +
Sbjct: 186 YYERNDTTLEPGTFRGRGDVVEVYPAYS-DTALRVFFFDDEIERIEEIDPLWGKTIVEKD 244

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              ++   HYVT   ++  A+K I+EEL  R+ EL+ EG+LLEAQRL  R  YD++ML  
Sbjct: 245 CAAVFPAQHYVTTHDSIKKALKAIEEELDFRVAELQSEGKLLEAQRLSTRTRYDMQMLSE 304

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR+L GRNPGEPP TL ++ P D ++ +DESH+T+PQI GMY GD  RK 
Sbjct: 305 VGYCSGIENYSRHLDGRNPGEPPGTLLDFFPGDFVMVIDESHITVPQIRGMYNGDVSRKK 364

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL E+GFRLPSC+DNRPLR+EE+       I VSATPG +EL   +  +VE ++RPTG++
Sbjct: 365 TLVEHGFRLPSCLDNRPLRWEEFEEYMKQVIFVSATPGDYELSTSEQ-VVELLVRPTGIL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VE+  A+ Q++D+   +    ++  R+L+  LTKR AEDL EYL     +V+Y+HSE
Sbjct: 424 DPKVEVVPAKHQLDDLLYRLKGCLKENKRVLVNTLTKRSAEDLAEYLAGLGYKVKYIHSE 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             T ER E++RDLR+G  D+LVG+NLLREGLD+PE  LVAILDAD+EGFLRS  S+IQ I
Sbjct: 484 FDTFERAELLRDLRIGTIDILVGVNLLREGLDLPEVSLVAILDADREGFLRSSRSIIQMI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAAR+    V+LYAD +T+SI++A+ ET RRR+ Q   N +H I P+S+ + I+ ++  
Sbjct: 544 GRAARHAAGMVVLYADEMTESIKVAVSETERRRKIQEAFNIEHGIEPKSIVKPIVHLLPE 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            LLE                  +  +  L+ L + M  A   LNFEEAAR+RD I  +K 
Sbjct: 604 ELLEKREGEG------DHGAVPRPSEVSLEELERMMWDAVAKLNFEEAARLRDLISDIKG 657

Query: 796 SPYFQG 801
               +G
Sbjct: 658 GRITRG 663


>gi|294507156|ref|YP_003571214.1| UvrABC system protein B [Salinibacter ruber M8]
 gi|294343484|emb|CBH24262.1| UvrABC system protein B [Salinibacter ruber M8]
          Length = 691

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/668 (50%), Positives = 465/668 (69%), Gaps = 18/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++D+ P GDQP AI +L+ G+   ++ Q LLG TG+GKTFT+A VIE + +P +VM+
Sbjct: 12  FQLESDFEPMGDQPQAIRELVDGVGRGDEHQTLLGATGTGKTFTVANVIEEVNKPTLVMS 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYF+SYYDYYQPE+Y+   DTYIEK+ +IN++I+R+R 
Sbjct: 72  HNKTLAAQLYGELKQFFPNNAVEYFISYYDYYQPESYIVPNDTYIEKDVAINDRIERLRL 131

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT  L+  R+D IVV+SVSCIYG+GS   + + I+ L+ G  VE+ +LL   +   Y+R
Sbjct: 132 RATSELVSGRDDVIVVASVSCIYGLGSPAEFRKEILPLERGLEVERNDLLRRFIDLFYER 191

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI    GTFRV GD ++IFP++ E++A R+  +G++I+ ++ F P +G+++  V    +
Sbjct: 192 NDIEFTPGTFRVRGDVVDIFPAYREEIALRIEFWGDEIDRLALFEPESGRELEEVNQFTL 251

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +VTP   L  A++ IKEEL+ RL  L +EG+++EAQRLEQR  +DLEM++  G C
Sbjct: 252 YPAQIFVTPDDRLERAIEDIKEELRWRLAVLREEGKMVEAQRLEQRTMFDLEMMQEVGYC 311

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LTGR PGE P  L +Y P+D +L VDESHVTIPQ+  MY GD  RK  L E
Sbjct: 312 SGIENYSRHLTGREPGERPYCLLDYFPDDFMLVVDESHVTIPQVRAMYNGDRQRKLKLVE 371

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL FEE+  L P TI +SATP  +ELEQ  G+ VEQ++RPTG+ DP V
Sbjct: 372 HGFRLPSALDNRPLTFEEFEELTPQTIYMSATPADYELEQSGGVFVEQVVRPTGIPDPEV 431

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R    QV+D+ +EI   A++G R+L+T LTKRM EDL +YL    + VR+MHS++  L
Sbjct: 432 DVRPTGNQVDDLMEEIRKRAEKGERVLVTTLTKRMTEDLADYLDSYGVDVRWMHSDIDAL 491

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++IIR LRLG++DVLVG+NLLREGLD+PE  LVAILDAD++GFLRS+TSLIQT GRAA
Sbjct: 492 ERVDIIRGLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADQQGFLRSETSLIQTAGRAA 551

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN +VILYAD IT ++Q  IDET RRRE+QLE+N+ H++ P+ +++   E+     + 
Sbjct: 552 RNVNGEVILYADEITDAMQKMIDETERRRERQLEYNETHDVTPEPIRKSPDEIKMGTAIA 611

Query: 740 DAATTNISIDAQQLSLSKKKGKAHL-------------KSLRKQMH----LAADNLNFEE 782
           D  +      ++    S  +  + +             + L  QM      AA+NL FE 
Sbjct: 612 DEKSEGEESGSRHHYGSPDQLSSEVADPVVEYLSEDQKEDLVDQMREEMEEAAENLEFER 671

Query: 783 AARIRDEI 790
           AA +RD I
Sbjct: 672 AAELRDSI 679


>gi|83815715|ref|YP_445286.1| excinuclease ABC subunit B [Salinibacter ruber DSM 13855]
 gi|83757109|gb|ABC45222.1| excinuclease ABC, B subunit [Salinibacter ruber DSM 13855]
          Length = 691

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/668 (50%), Positives = 465/668 (69%), Gaps = 18/668 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+++D+ P GDQP AI +L+ G+   ++ Q LLG TG+GKTFT+A VIE + +P +VM+
Sbjct: 12  FQLESDFEPMGDQPQAIRELVDGVGRGDEHQTLLGATGTGKTFTVANVIEEVNKPTLVMS 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFP+NAVEYF+SYYDYYQPE+Y+   DTYIEK+ +IN++I+R+R 
Sbjct: 72  HNKTLAAQLYGELKQFFPNNAVEYFISYYDYYQPESYIVPNDTYIEKDVAINDRIERLRL 131

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT  L+  R+D IVV+SVSCIYG+GS   + + I+ L+ G  VE+ +LL   +   Y+R
Sbjct: 132 RATSELVSGRDDVIVVASVSCIYGLGSPAEFQKEILPLERGLEVERNDLLRRFIDLFYER 191

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI    GTFRV GD ++IFP++ E++A R+  +G++I+ ++ F P +G+++  V    +
Sbjct: 192 NDIEFTPGTFRVRGDVVDIFPAYREEIALRIEFWGDEIDRLALFEPESGRELEEVNQFTL 251

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +VTP   L  A++ IKEEL+ RL  L +EG+++EAQRLEQR  +DLEM++  G C
Sbjct: 252 YPAQIFVTPDDRLERAIEDIKEELRWRLAVLREEGKMVEAQRLEQRTMFDLEMMQEVGYC 311

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+LTGR PGE P  L +Y P+D +L VDESHVTIPQ+  MY GD  RK  L E
Sbjct: 312 SGIENYSRHLTGREPGERPYCLLDYFPDDFMLVVDESHVTIPQVRAMYNGDRQRKLKLVE 371

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPL FEE+  L P TI +SATP  +ELEQ  G+ VEQ++RPTG+ DP V
Sbjct: 372 HGFRLPSALDNRPLTFEEFEELTPQTIYMSATPADYELEQSGGVFVEQVVRPTGIPDPEV 431

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++R    QV+D+ +EI   A++G R+L+T LTKRM EDL +YL    + VR+MHS++  L
Sbjct: 432 DVRPTGNQVDDLMEEIRKRAEKGERVLVTTLTKRMTEDLADYLDSYGVDVRWMHSDIDAL 491

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++IIR LRLG++DVLVG+NLLREGLD+PE  LVAILDAD++GFLRS+TSLIQT GRAA
Sbjct: 492 ERVDIIRGLRLGEYDVLVGVNLLREGLDLPEVSLVAILDADQQGFLRSETSLIQTAGRAA 551

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN +VILYAD IT ++Q  IDET RRRE+QLE+N+ H++ P+ +++   E+     + 
Sbjct: 552 RNVNGEVILYADEITDAMQKMIDETERRRERQLEYNETHDVTPEPIRKSPDEIKMGTAIA 611

Query: 740 DAATTNISIDAQQLSLSKKKGKAHL-------------KSLRKQMH----LAADNLNFEE 782
           D  +      ++    S  +  + +             + L  QM      AA+NL FE 
Sbjct: 612 DEKSEGEESGSRHHYGSPDQLSSEVADPVVEYLSEDQKEDLVDQMREEMEEAAENLEFER 671

Query: 783 AARIRDEI 790
           AA +RD I
Sbjct: 672 AAELRDSI 679


>gi|302325697|gb|ADL24898.1| UvrABC system protein B [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 706

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/690 (48%), Positives = 458/690 (66%), Gaps = 38/690 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y  +GDQP AI +L +G  + E+ Q LLGVTGSGKTFTMA VI+ + +P +++ 
Sbjct: 16  FDLVSPYGAAGDQPKAIEELTEGFKNGEQFQTLLGVTGSGKTFTMANVIKNVGKPTLILT 75

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP+NAVEYFVSYYDY+QPEAY+P TDT+IEK++SIN++ID++R 
Sbjct: 76  HNKTLAAQLYQEFKSFFPNNAVEYFVSYYDYFQPEAYIPHTDTFIEKDASINDEIDKLRL 135

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT +LL R D I+V+SVSCIYG+GS   Y  ++V++K GD  ++ ++L  LV  QY R 
Sbjct: 136 RATANLLTRRDVIIVASVSCIYGLGSPSEYFDLMVRIKKGDIYDRDKILRDLVHIQYSRN 195

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RG+FRV GD IE+ PS+ ED   R+ +FG++++ +  F  +TG+ I+ VE + I 
Sbjct: 196 DFSLDRGSFRVRGDVIEVHPSYDED-GLRIELFGDEVDRLYRFNIVTGEVIKEVEELTIA 254

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VT        ++ I++EL  RL EL+KEG++LE+ RL  R  YD+EML  TG C 
Sbjct: 255 PAKHFVTKEENRAGMLQRIQKELTDRLAELDKEGKVLESARLSSRTRYDMEMLRETGMCN 314

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR +  R PG  P TL +Y  +D LL +DESHV+IPQ+ GM  GD  RK TL +Y
Sbjct: 315 GIENYSRIIEDRAPGTRPFTLIDYFGDDWLLMIDESHVSIPQVGGMAEGDKSRKTTLVQY 374

Query: 501 GFRLPSCMDNRPLRFEEWNCLRP-TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           GFRLP  +DNRP+ F E+  + P   + VSATPG +EL++  G++ EQI RPTGL+DP +
Sbjct: 375 GFRLPCALDNRPMNFAEFEYMYPKQVLFVSATPGDYELKKTNGVVTEQINRPTGLLDPKI 434

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+   + Q++ +   I    + G R+L+T LTK+MA+DLTE+  E  +R +Y+HS++KTL
Sbjct: 435 ELFPIQGQMDVLLYRIEEVVKNGDRVLVTTLTKKMAQDLTEFFIEAGVRAKYLHSDIKTL 494

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER E+IR LR G++DVLVGINLLREGLD+PE  +VAILDADKEGFLR+  SLIQT+GRA+
Sbjct: 495 ERHELIRGLRSGEYDVLVGINLLREGLDLPEVSMVAILDADKEGFLRNYRSLIQTMGRAS 554

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME---VIDPI 736
           RNVN  V+L+AD +T+S+Q AIDET RRR  Q E NK+H I P+SV  KI E   +IDP+
Sbjct: 555 RNVNGTVLLFADNMTESLQKAIDETNRRRGLQEEFNKEHGITPKSVTRKIEEDLRIIDPL 614

Query: 737 ---------------------------------LLEDAATTNISIDAQQLSLSKKKGKAH 763
                                              +D      +          K  ++ 
Sbjct: 615 GDIGDDTTDSEDDWKDKPGIRPMEPLQPSNYRRKTKDERRKKAAAPGAPPDKPSKASESK 674

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L  L +QM  AA  L+FEEAARIRD I+ L
Sbjct: 675 LADLERQMKEAAARLDFEEAARIRDIIRSL 704


>gi|309803824|ref|ZP_07697909.1| excinuclease ABC, B subunit [Lactobacillus iners LactinV 11V1-d]
 gi|308164058|gb|EFO66320.1| excinuclease ABC, B subunit [Lactobacillus iners LactinV 11V1-d]
          Length = 624

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/623 (51%), Positives = 440/623 (70%), Gaps = 3/623 (0%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G TG+GKTFTMA +I  + +P +V++ NK L  QLY EFK FFP+NAVEYFVSYYDYYQP
Sbjct: 3   GATGTGKTFTMANLIAKLNKPTLVISHNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQP 62

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           EAYVP +DTYIEK+S+IN++ID++RH+ T +L++R D IVV+SVSCI+G+G    Y++ +
Sbjct: 63  EAYVPSSDTYIEKDSAINDEIDQLRHATTSALMQRKDVIVVASVSCIFGLGDPREYAKSV 122

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G+  E+  LL  LV  QY R D+ + RG FRV GD +EIFP+   +  +RV  FG
Sbjct: 123 ISLSVGEEYERDLLLRDLVNIQYDRNDLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFG 182

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I++I E   LTG+ +   E I ++  +H++T    +  A+  IK+EL +++   + +G
Sbjct: 183 DEIDQIVEANSLTGEILGKCEQISLFPATHFMTDSEQMKRAINDIKKELSLQVKAFDDKG 242

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           +LLEAQR++QR  YD+EM++  G    IENYSR++  R  GEPP TL ++ P+D L+ +D
Sbjct: 243 KLLEAQRIKQRTNYDIEMMQEVGYTNGIENYSRHMDNRKAGEPPYTLLDFFPDDFLILID 302

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           ESH T+P++  MY GD  RK TL +YGFRLPS +DNRPL+  E+       + VSATPG 
Sbjct: 303 ESHATMPELQAMYNGDRRRKQTLIDYGFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGD 362

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           +EL +    +VEQIIRPTGL+DP VE+R    Q++D+  EIN+  ++  R+ +T LTK+M
Sbjct: 363 YELSRT-DKVVEQIIRPTGLLDPIVEVRPINGQIDDLIAEINIRIRRKERVFVTTLTKKM 421

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           +EDLT+YL E  I+V+Y+HSE+KTLER++IIRDLRLGKFDVLVGINLLREG+D+PE  LV
Sbjct: 422 SEDLTDYLKELGIKVQYLHSEIKTLERMKIIRDLRLGKFDVLVGINLLREGIDVPEVSLV 481

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
           AILDADKEGFLRS   LIQ +GRAARN N KVI+YAD IT S+Q AID T RRR  Q+  
Sbjct: 482 AILDADKEGFLRSTRPLIQMMGRAARNENGKVIMYADHITDSMQAAIDVTERRRHIQMLF 541

Query: 715 NKKHNINPQSVKEKIMEVIDPILLEDAATTNIS--IDAQQLSLSKKKGKAHLKSLRKQMH 772
           N+KH+I P+++ + I ++I      D    +I+   D     LS K+ +  + +L +QM 
Sbjct: 542 NQKHHIIPKTIVKPIRDIISHTKDVDQKDKHINDFSDLNFDELSAKQKEQMIINLTEQMK 601

Query: 773 LAADNLNFEEAARIRDEIKRLKS 795
           +AA  L+FE AA +RD I  LK 
Sbjct: 602 IAAQKLDFETAATLRDAIIDLKK 624


>gi|34558250|ref|NP_908065.1| excinuclease ABC subunit B [Wolinella succinogenes DSM 1740]
 gi|81832798|sp|Q7M806|UVRB_WOLSU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|34483969|emb|CAE10965.1| EXINUCLEASE ABC SUBUNIT B [Wolinella succinogenes]
          Length = 658

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/661 (50%), Positives = 465/661 (70%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P+GDQP AI +L + I ++ + Q L+GVTGSGKT+TMAK+IE +Q P +
Sbjct: 1   MQPFKVHSPYEPAGDQPQAIEKLAQSIQTQHRYQTLVGVTGSGKTYTMAKIIEKLQIPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M  NK LAAQLYSEF+ FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSINE+++R
Sbjct: 61  IMTHNKTLAAQLYSEFRGFFPKNHVEYFISHFDYYQPEAYIPRQDLFIEKDSSINEELER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL   D IVV+SVS  YG+GS   Y QMI +L++G+ + Q+ELL  LV+  Y
Sbjct: 121 LRLSATTSLLAHEDVIVVASVSANYGLGSPAEYVQMIQKLEVGERLHQRELLLRLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR D    RG FRV G+ I+I+P++ ED   RV  FG++IE I+    +  Q +  + + 
Sbjct: 181 KRNDNFFDRGDFRVNGEVIDIYPAYSEDEVVRVEFFGDEIERIALLDSVDRQALGELPSY 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA + ++  +  L+ A+K I+ EL+ RL   +KEGR++E  RL+QR  +DLEM+  TG
Sbjct: 241 ILYAANQFIVGQNRLHEALKTIESELEERLAFYQKEGRMVEHARLKQRTEFDLEMIGATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENYSR+LTG+  GE P +L +Y     +  L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 ICKGIENYSRHLTGKKVGETPYSLLDYFEFKGKPYLIIVDESHVSLPQFGGMYAGDRSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L E+GFRLPS +DNRPL +EE+    P  + VSATP   ELE  Q  I EQI+RPTGL
Sbjct: 361 EVLVEHGFRLPSALDNRPLTYEEFITKAPHYLFVSATPAPRELELSQAQIAEQIVRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R ++ QV  ++DEI     +G R+L+T LTK+MAE+LT+Y  +  I+VRYMHS
Sbjct: 421 LDPLYEVRDSQNQVAALFDEIKAVVARGERVLITALTKKMAEELTKYYADLGIKVRYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER +IIR LR G+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNQIIRGLRTGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN+N +V+L+A  IT S++ A++ T  RR KQ E N+KH I P+SV  K+ E + 
Sbjct: 541 MGRAARNLNGRVLLFAQKITPSMKRAMEVTDYRRSKQQEFNQKHGITPKSVTRKLDEELR 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              + D      +  +++  + K + +  +K + K+MH AA  L+FEEAAR+RDEI +++
Sbjct: 601 LEGVGDL----YAKASKKEKIPKAEREKIIKEMTKKMHEAAKLLDFEEAARLRDEIAKIR 656

Query: 795 S 795
           +
Sbjct: 657 A 657


>gi|224438015|ref|ZP_03658954.1| excinuclease ABC subunit B [Helicobacter cinaedi CCUG 18818]
 gi|313144461|ref|ZP_07806654.1| UvrABC system protein B [Helicobacter cinaedi CCUG 18818]
 gi|313129492|gb|EFR47109.1| UvrABC system protein B [Helicobacter cinaedi CCUG 18818]
          Length = 658

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/661 (50%), Positives = 449/661 (67%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI ++   I +  K   L+GVTGSGKT+TMA +I  +  P +
Sbjct: 1   MAKFILESQYAPAGDQPQAITKITDSILNGAKYSTLVGVTGSGKTYTMANIIAKLNLPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M  NK LAAQLYSEFK FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSINE ++R
Sbjct: 61  IMTHNKTLAAQLYSEFKGFFPKNKVEYFISHFDYYQPEAYIPRRDLFIEKDSSINEDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IVV+SVS  YG+G+ + Y  MI +L++G S  QK LL  LV   Y
Sbjct: 121 LRLSATTSLLAYDDVIVVASVSANYGLGNPQEYLTMIEKLEVGQSYTQKALLLKLVNMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D    RG FRV G+ ++IFP++ E+   R+  FG++IE I  F  L  Q +  +++ 
Sbjct: 181 TRNDSIFERGNFRVNGEVVDIFPAYNENEFIRIEFFGDEIERIGAFDALERQNLAWLKSF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA + ++     L  A++ I+ EL+MRL E E E + +E QRL+ R  +DLEM+  +G
Sbjct: 241 VLYAANQFIVSEKRLQLALQNIESELEMRLQEFELENKQIEYQRLKGRTEFDLEMIRESG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+LTG+ PGE P +L +Y     +  L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 ICKGIENYARHLTGKAPGETPYSLLDYFEQKGKPYLIIVDESHVSLPQFGGMYAGDRSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L EYGFRLPS +DNRPLRF+E+    P  + VSATP   ELE  Q  I EQIIRPTGL
Sbjct: 361 EVLVEYGFRLPSALDNRPLRFDEFINKAPHFLFVSATPAKLELELSQSHIAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV D+YDEI L  +   R+L+T LTK+MAE+L++Y  E  I+VRYMHS
Sbjct: 421 LDPLYEVRDSDNQVLDLYDEIKLRVENNERVLITTLTKKMAEELSKYYGELGIKVRYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER  +IR LRLG+F+VL+GINLLREGLD+PE  L+AI+DADKEGFLRS+TSLIQT
Sbjct: 481 DIDAIERNHLIRSLRLGEFNVLIGINLLREGLDLPEVSLIAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KVILYA  IT S+Q A D T  RR KQ   NK+HNI P+SV+      ++
Sbjct: 541 MGRAARNVNGKVILYAKKITGSMQRAFDITDYRRAKQEAFNKEHNITPKSVQRG----LE 596

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L  +++  +   +     + K +  + +K L  +M  AA  L FEEAARIRDEI +++
Sbjct: 597 SELKIESSGLSRLYEKGNKKIPKSERDSIIKDLTLKMQQAAKALEFEEAARIRDEIAKIR 656

Query: 795 S 795
            
Sbjct: 657 K 657


>gi|194337381|ref|YP_002019175.1| excinuclease ABC, B subunit [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309858|gb|ACF44558.1| excinuclease ABC, B subunit [Pelodictyon phaeoclathratiforme BU-1]
          Length = 698

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/674 (48%), Positives = 441/674 (65%), Gaps = 14/674 (2%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
               +++ + Y P+GDQP AI  L  G+ S    Q LLGVTGSGKTFT++ VI    RP 
Sbjct: 19  GSGIYKIVSPYSPAGDQPKAIEALCDGVRSGNPYQTLLGVTGSGKTFTISNVIARFDRPV 78

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +VM+ NK LAAQLY E K FFP NAVEYF+SYYD+YQPEAY+P  D YI K+  IN++I+
Sbjct: 79  LVMSHNKTLAAQLYGELKQFFPDNAVEYFISYYDFYQPEAYLPSLDKYIAKDLRINDEIE 138

Query: 257 RMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           R+R  AT SLL  R D IVVSSVSCIYG+GS E +   IV+L+ G   ++   L  L+  
Sbjct: 139 RLRLKATSSLLSGRKDVIVVSSVSCIYGLGSPEDWKAQIVELRSGMEKDRDLFLKELISL 198

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y R D+    G FRV GD I++ P+H E++A R+  FG++IE I  F   +G+ +   +
Sbjct: 199 HYIRDDVQPSSGKFRVRGDIIDLVPAH-EELALRIEFFGSEIESIQTFDIHSGEVLGVED 257

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              IY    +V     L  AM  I+ EL  RL     E RLLEA+R+E+R  YDLEM++ 
Sbjct: 258 YAFIYPARQFVADEEKLKVAMLAIENELAERLNYFRSENRLLEARRIEERTRYDLEMMKE 317

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR+L+ R PGE P  L +Y P D L+ +DESHVT+PQI GMY GD  RK 
Sbjct: 318 LGYCSGIENYSRHLSARPPGERPCCLLDYFPSDFLVIIDESHVTLPQIRGMYGGDRSRKT 377

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L E+GFRLPS +DNRPLRFEE+  +    I VSATP   EL +  G++VEQ++RPTGL+
Sbjct: 378 ILVEHGFRLPSALDNRPLRFEEFEEMASQVICVSATPSEHELLRSGGVVVEQLVRPTGLL 437

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DPPVE+R    Q++++  EI +   +G ++L+  LTKRM+EDL ++  +  IR RY+HSE
Sbjct: 438 DPPVEVRPVTGQIDNLLAEIRIHTAKGNKVLVMTLTKRMSEDLHDFFRKTGIRSRYLHSE 497

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K+LER++I+R+LR+G  DVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL+Q  
Sbjct: 498 IKSLERMQILRELRVGDIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIA 557

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV+  V+LYAD +T+SI+  +DET RRR  Q  +N++H I P+S+ + + +++D 
Sbjct: 558 GRAARNVDGLVVLYADVVTRSIREVLDETARRRTIQQRYNEEHGITPRSIIKSVDQILDT 617

Query: 736 ILLEDAAT------------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
             + DA                  +     +L+ + G A    LR +M  AA  + +E+A
Sbjct: 618 TGVADAEERYRRKRFGLEPKPERVLSGHIDTLTPEAGYALAAELRLEMQEAAVQMEYEKA 677

Query: 784 ARIRDEIKRLKSSP 797
           A +RDEI +L+ + 
Sbjct: 678 AYLRDEITKLEQAL 691


>gi|297564591|ref|YP_003683563.1| excinuclease ABC subunit B [Meiothermus silvanus DSM 9946]
 gi|296849040|gb|ADH62055.1| excinuclease ABC, B subunit [Meiothermus silvanus DSM 9946]
          Length = 668

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/652 (52%), Positives = 464/652 (71%), Gaps = 9/652 (1%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207
            P GDQP AIAQL + I   E+   LLG TG+GKT TMA+ I  + RPA+VMAPNK+LAA
Sbjct: 8   EPKGDQPKAIAQLTEAIQDGERFVTLLGATGTGKTVTMAQTIAKLGRPALVMAPNKVLAA 67

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           QL SEF+  FP NAVEYF+SYYDYYQPEAYVP  D +IEK++SIN +I+R+RHS TRSLL
Sbjct: 68  QLASEFRELFPENAVEYFISYYDYYQPEAYVPGRDLFIEKDASINPEIERLRHSTTRSLL 127

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
            R D IVV+SVS IYG+GS E Y  M + +++G  + ++ +L  LV  QY+R D+ +  G
Sbjct: 128 TRRDVIVVASVSAIYGLGSPEDYKNMSLVVEVGQDLPREAILERLVDLQYERGDLQLEPG 187

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
           TFR  G+ +E++P++ E    R+ M+G+ +E IS  +P+TG++++++    +   +HY T
Sbjct: 188 TFRAKGEVLEVWPAY-ETEPIRIEMWGHTLERISVTHPVTGERLKDLPGFVLLGATHYAT 246

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
           P   L  A+  IK +L++RL ELE++G+LLEAQRL++R  YDLEMLE  G+C  IENYSR
Sbjct: 247 PEARLKEAIPQIKADLEVRLSELEEQGKLLEAQRLKERTLYDLEMLEVMGTCPGIENYSR 306

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
           YL+G+ PGEPP TL +Y PED L F+DESHVT+PQ+ GMY GD+ RK TL +YGFRLPS 
Sbjct: 307 YLSGKAPGEPPYTLLDYFPEDYLTFLDESHVTVPQLRGMYNGDYMRKKTLVDYGFRLPSA 366

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +DNRPLRF E+       I VSATPG +E E   G I+EQIIRPTGL+DP V I+SA+ Q
Sbjct: 367 LDNRPLRFNEFLERVGQVIFVSATPGPYEQEVS-GRIIEQIIRPTGLLDPKVTIKSAQGQ 425

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +ED+   I   + +  R+L+TVLT RMAE+LT YL E  IR RY+H E+   ER  ++RD
Sbjct: 426 IEDLMGAIRTRSAKKERVLVTVLTVRMAEELTNYLVEHGIRARYLHHELDAFERQALLRD 485

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LRLG FD LVGINLLREGLD+PE  LVAILDADK GFLRS+ SLIQTIGRAARN   +V 
Sbjct: 486 LRLGHFDCLVGINLLREGLDLPEVSLVAILDADKTGFLRSERSLIQTIGRAARNAEGEVY 545

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           LYA+T+++++++A++ET RRR  Q  +N++H I PQ+V++ + +VI P   E+ AT  + 
Sbjct: 546 LYAETVSEAMRIAVEETNRRRAIQEAYNQEHGITPQTVQKSVRKVIKPDDYEEEATQALL 605

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
                     +  +  L +L ++M  A++ L+FE AA IRD+++ L++    
Sbjct: 606 ER-------PEDLREALLNLEEEMWRASEALDFERAALIRDQMRSLEARMLG 650


>gi|21674365|ref|NP_662430.1| excinuclease ABC subunit B [Chlorobium tepidum TLS]
 gi|81790952|sp|Q8KC79|UVRB_CHLTE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|21647543|gb|AAM72772.1| excinuclease ABC, subunit B [Chlorobium tepidum TLS]
          Length = 684

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/670 (48%), Positives = 442/670 (65%), Gaps = 14/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y P+GDQP+AI  L  G+   ++ Q LLGVTGSGKTFT++ VI  + RP +V++
Sbjct: 11  FKLESPYGPTGDQPSAIKALTDGVLRGDRWQTLLGVTGSGKTFTVSNVIAQVNRPTLVLS 70

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFPHNAVEYF+SYYD+YQPEAY+P  D YI K+  IN++I+R+R 
Sbjct: 71  HNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPSLDKYIAKDLKINDEIERLRL 130

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT +LL  RND IVVSSVSCIYG+GS E +   IV+L+ G  +++ E L  LV   Y R
Sbjct: 131 RATSALLSGRNDVIVVSSVSCIYGLGSPEDWMAQIVELRQGMELDRDEFLQRLVALHYFR 190

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ +  G FRV GD I++ P H E++A R+  FG++I+ I  F P +G+ I   E   I
Sbjct: 191 DDVDLSPGRFRVRGDVIDLVPGH-EELALRIEFFGSEIDSIHTFDPKSGEIIGRDEYAFI 249

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +V     L  AM  I+ EL  RL  L  E +L+EAQRLE+R  YDLEM++  G C
Sbjct: 250 YPARQFVADSEKLEVAMLAIENELAERLNALRAEEKLVEAQRLEERTRYDLEMMKELGYC 309

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENY+R++ GR PGE P  L +Y PED L+ VDESHVT+PQI GMY GD  RK  L E
Sbjct: 310 SGIENYARHIAGRKPGERPWCLLDYFPEDFLVVVDESHVTLPQIRGMYGGDRSRKTVLVE 369

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEE+  + P  I VSATP + EL +  G++VEQ+IRPTGL+DP +
Sbjct: 370 HGFRLPSALDNRPLRFEEFEEMVPQVICVSATPSAHELMRSGGVVVEQLIRPTGLLDPQI 429

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+     Q++ +   I     +G + L+  LTKRM+EDL  Y  +  +R +Y+HSE+K+L
Sbjct: 430 EVHPVAGQIDHLLARIRERIAKGQKSLVLTLTKRMSEDLHAYFRKLGLRSQYLHSEIKSL 489

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+R+LR G  +VLVG+NLLREGLD+PE  LVAILDADKEGFLR  TSL+Q  GRAA
Sbjct: 490 ERMQILRELRAGDIEVLVGVNLLREGLDLPEVALVAILDADKEGFLRDATSLMQIAGRAA 549

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV   V+ YAD IT S++  +DET RRR  Q E+N+KH I P+S+ + + +V++   + 
Sbjct: 550 RNVEGLVLFYADKITDSMREVLDETERRRRIQREYNEKHGIEPRSIIKSVDQVLNTTSVA 609

Query: 740 DAAT------------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           DA                + +     S+S+      +  +  +M  AA+  ++E+AA +R
Sbjct: 610 DAEERYRRKRLGLQKRPELELRGVLDSMSRSDVMLMVAEMNAEMQKAAEQTDYEKAAYLR 669

Query: 788 DEIKRLKSSP 797
           DEI  L+   
Sbjct: 670 DEILMLQERI 679


>gi|291297353|ref|YP_003508751.1| excinuclease ABC subunit B [Meiothermus ruber DSM 1279]
 gi|290472312|gb|ADD29731.1| excinuclease ABC, B subunit [Meiothermus ruber DSM 1279]
          Length = 673

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/650 (51%), Positives = 454/650 (69%), Gaps = 9/650 (1%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207
            P GDQP AIA L + +   E+   LLG TG+GKT TMAKVIEA+QRPA+VMAPNK+LAA
Sbjct: 15  EPKGDQPQAIAALTEALRDGERFVTLLGATGTGKTVTMAKVIEALQRPALVMAPNKVLAA 74

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           QL +EF+  FP NAVE+F+SYYDYYQPEAYVP  D YIEK++SIN +I+R+RHS TRSLL
Sbjct: 75  QLAAEFRELFPENAVEFFISYYDYYQPEAYVPGRDLYIEKDASINPEIERLRHSTTRSLL 134

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
            R D IVV+SVS IYG+GS E Y  M + +++G    ++ L+  LV  QY+R D+ +  G
Sbjct: 135 TRRDVIVVASVSAIYGLGSPEDYKNMSLVVEVGQDCPRERLIERLVDLQYERGDLQLEAG 194

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            FR  G+ +E++P++ E    R+ +FG+ I+ ++  +P+TG++++++    +   +HY T
Sbjct: 195 RFRARGEVLEVWPAY-EQEPIRIELFGDTIDRVTVVHPVTGERLKDLPGFVLLGATHYAT 253

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
           P   L  A+  I+ EL+ RL   E EG+LLEAQRL++R  YDLEMLE  G+C  IENYSR
Sbjct: 254 PEWRLKEAIPEIRRELEERLKVFEAEGKLLEAQRLKERTLYDLEMLEVMGTCPGIENYSR 313

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
           +L+G+ PGE P TL +Y PED L+ +DESHV++PQ+ GMY GD+ RK TL +YGFRLPS 
Sbjct: 314 FLSGKTPGEAPYTLLDYFPEDYLVLLDESHVSVPQLRGMYNGDYIRKKTLVDYGFRLPSA 373

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +DNRPL+F E+       + VSATPG +ELE   G +VEQIIRPTGL+DP V ++    Q
Sbjct: 374 LDNRPLKFNEFLERVGQVVFVSATPGPYELEVS-GRVVEQIIRPTGLLDPRVTVKPTTGQ 432

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +ED+   I   A +G R L+TVLT RMAE+LT YL E  +R RY+H E+   ER  ++RD
Sbjct: 433 IEDLMGAIRTRAARGERTLVTVLTVRMAEELTAYLVEHGVRARYLHHELDAFERQALLRD 492

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LRLG FD LVGINLLREGLD+PE  LVAILDADK+GFLRS+ SLIQTIGRAARNV  +V 
Sbjct: 493 LRLGYFDALVGINLLREGLDLPEVSLVAILDADKQGFLRSERSLIQTIGRAARNVGGEVF 552

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           LYADT++ +++ AI+ET RRR  Q  +N +H I P +V++ + +++ P   E  A   + 
Sbjct: 553 LYADTVSDAMKAAIEETNRRRALQEAYNLEHGITPATVQKSVRKLVKPEDYEAEAAEAVL 612

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            D   L    ++ +        +M  A++ L+FE+AA +RD+++ L++  
Sbjct: 613 DDPALLQSLLEQLET-------EMWAASEALDFEKAASLRDQMRSLEARI 655


>gi|224373160|ref|YP_002607532.1| excinuclease ABC subunit B [Nautilia profundicola AmH]
 gi|223589676|gb|ACM93412.1| excinuclease ABC, B subunit [Nautilia profundicola AmH]
          Length = 676

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/679 (48%), Positives = 459/679 (67%), Gaps = 28/679 (4%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +++ P+GDQP AI +L   I    +   L+GVTGSGKTFTMA +I+ +Q P +++
Sbjct: 1   MFKLNSNFKPTGDQPQAIEKLSGCIKQGNRYNTLIGVTGSGKTFTMANIIQKLQIPTLIL 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
             NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SSIN +++R+R
Sbjct: 61  THNKTLAAQLYSEFKEFFPQNHVEYFISYYDYYQPEAYLPRQDLFIEKDSSINAELERLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLLE +D IVV+SVS +YG+G+   Y +M+ ++ +GD + Q++ +  L+   Y R
Sbjct: 121 VSATASLLEYDDVIVVASVSALYGLGNPIEYKKMVAKIAVGDEINQRQFMMRLLSMGYTR 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RG FRV G+ I+IFP++ ED   RV  FG++I+ I     +T +K+++++ I I
Sbjct: 181 NDKYFERGNFRVNGEVIDIFPTYFEDDVIRVEFFGDEIDRIYTIDYMTNEKLQDLKEITI 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA + ++     L  A++ I++EL  RL E E++G+++E QRL+QR  +DLEMLETTG+C
Sbjct: 241 YAANQFIVGADRLAEAIQSIEKELGERLKEFEQQGKIIEHQRLKQRTEFDLEMLETTGTC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENYSR+LTG+ PGE P +L +Y     +  L+ VDESHV++PQ  GMY GD  RK  
Sbjct: 301 KGIENYSRHLTGKKPGETPYSLLDYFEIKGKPYLVIVDESHVSLPQFRGMYNGDRARKEV 360

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRP +F+E+    P  + VSATPG +ELE     + EQIIRPTGL+D
Sbjct: 361 LVEYGFRLPSALDNRPYKFDEFINKAPHYLFVSATPGEYELEIS-TCVAEQIIRPTGLLD 419

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P VE+  ++ QV  ++D      ++G ++L+T LTK+MAE+L +Y  E  ++V+YMHS++
Sbjct: 420 PIVELLPSQNQVATLFDRAKEVIEKGEKVLVTTLTKKMAEELQKYYLEMGLKVKYMHSDI 479

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
             +ER EIIR LR G+FD+L+GINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT+G
Sbjct: 480 DVVERNEIIRGLRSGEFDMLIGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMG 539

Query: 677 RAARNVNSKVILYA--------------------DTITKSIQLAIDETTRRREKQLEHNK 716
           RAARNVN +V+++A                    D IT S+  AI  T  RR KQ E+NK
Sbjct: 540 RAARNVNGRVLMFAGKIEEPVVLDDDLEVLEKIKDKITGSMYRAIKTTITRRIKQKEYNK 599

Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
           KH I P+S   K    +D  L E+           +  +  K+ KA +  LRK+M+ AA 
Sbjct: 600 KHGIIPKSTIRK----LDKSLKEEGYEAIAKELKNKNKIPAKEKKAIIAKLRKEMNEAAK 655

Query: 777 NLNFEEAARIRDEIKRLKS 795
            L FE+AA +RD+I+ LK 
Sbjct: 656 ALEFEKAAMLRDKIEELKK 674


>gi|78186279|ref|YP_374322.1| excinuclease ABC subunit B [Chlorobium luteolum DSM 273]
 gi|78166181|gb|ABB23279.1| Excinuclease ABC subunit B [Chlorobium luteolum DSM 273]
          Length = 695

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/668 (49%), Positives = 449/668 (67%), Gaps = 14/668 (2%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            +++ + Y P+GDQP AI +L +G+ +    Q LLGVTGSGKTFT++ VI    RP +VM
Sbjct: 14  IYRLVSPYEPAGDQPKAIKELTEGLKAGSPFQTLLGVTGSGKTFTISNVIAQAGRPVLVM 73

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK LAAQLY E + FFP NAVEYF+SYYD+YQPEAY+P  D YI K+  IN++I+R+R
Sbjct: 74  SHNKTLAAQLYGELRQFFPDNAVEYFISYYDFYQPEAYLPSIDKYIAKDLRINDEIERLR 133

Query: 260 HSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
             AT +LL  R D IVVSSVSCIYG+GS E +   I++L+ G   E+   L  L+   Y 
Sbjct: 134 LKATSALLSGRRDVIVVSSVSCIYGLGSPEEWKSQIIELRTGMLKERNSFLQELIALHYV 193

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+    G FRV GD I++ P++ + +A RV  FG++IE +  F   +G+ + +     
Sbjct: 194 RDDVDPGSGKFRVRGDIIDLIPAY-DQLALRVEFFGDEIESLQTFDMSSGEVLGSDPYAF 252

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY    +V     L  AM  I+ EL  RL EL    R +EA RLE+R  YDLEM++  G 
Sbjct: 253 IYPARQFVAGEEQLRQAMLRIENELAGRLNELRSAERFVEAGRLEERTRYDLEMMKELGY 312

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+++GRNPGE P  L +Y PED L+ VDESHVT+PQI GMY GD  RK+ L 
Sbjct: 313 CSGIENYSRHISGRNPGERPHCLLDYFPEDYLVVVDESHVTLPQIRGMYGGDRSRKSILV 372

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E+GFRLPS +DNRPLRF+E+  + P  I +SATPG  ELE+  G++VEQ++RPTGL+DPP
Sbjct: 373 EHGFRLPSALDNRPLRFDEFMDMVPEVICISATPGDLELERSGGVVVEQVVRPTGLLDPP 432

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R  + Q++++  EI      G ++L+  LTKRM+EDL ++L +  +R RY+HSE+K+
Sbjct: 433 VEVRPVKGQIDNLLMEIRRHTAGGHKVLVMTLTKRMSEDLHDFLRKAGVRSRYLHSEIKS 492

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER++I+R+LR G+ DVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL+Q  GRA
Sbjct: 493 LERMQILRELRTGEIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRA 552

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV   V+LYADTIT+SI+  +DET RRRE Q  +N++H I P+S+ + + E++D   +
Sbjct: 553 ARNVEGFVVLYADTITRSIREVLDETARRREIQHRYNEEHGITPRSITKSVEEILDTTSV 612

Query: 739 EDAAT------------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
            DA                  +     S++ ++G A    LR +M  AA  + +E+AA +
Sbjct: 613 ADAEERYRRRRFGLEPRPERLLSGVLESMTPEEGFAMAAELRAEMQQAALAMEYEKAAYL 672

Query: 787 RDEIKRLK 794
           RDEI RL+
Sbjct: 673 RDEIARLE 680


>gi|313683342|ref|YP_004061080.1| excinuclease ABC subunit b [Sulfuricurvum kujiense DSM 16994]
 gi|313156202|gb|ADR34880.1| Excinuclease ABC subunit B [Sulfuricurvum kujiense DSM 16994]
          Length = 657

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/661 (51%), Positives = 456/661 (68%), Gaps = 8/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P+GDQP AI  L  GI   E+   L GVTGSGKT TMA+VIE +Q P I
Sbjct: 1   MPIFKVHSPYQPAGDQPVAIEALSSGIKRGERYVALEGVTGSGKTMTMARVIEQVQLPTI 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M  NK LAAQLYSEF++FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SSIN++++R
Sbjct: 61  IMTHNKTLAAQLYSEFRSFFPENHVEYFISYYDYYQPEAYIPRQDLFIEKDSSINDELER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT +LL  +D IVV+SVS  YG+G  E Y +M+  + IGD + QK+LL  LV+  Y
Sbjct: 121 LRLSATANLLSYDDVIVVASVSANYGLGDPEEYEKMVQVVTIGDEISQKKLLLRLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D     G FRV G+ ++I+P + +D A R+  FG+++E ++ F PL    +  +ETI
Sbjct: 181 ARNDSYFDGGHFRVNGEVVDIYPPYWQDQALRIEFFGDEVERLALFEPLNNSVVETIETI 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IYA S +   +  L+ A+K I++EL  RL +L+KEG+++EAQRL+QR  +DLEML+ TG
Sbjct: 241 TIYATSQFAVGQEKLSRAIKRIEDELGERLAQLDKEGKIVEAQRLKQRCEFDLEMLQATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENYSR+LT + PGE P TL +Y     +  L+ VDESHV++PQ  GM+ GD  RK
Sbjct: 301 MCKGIENYSRHLTDKKPGEAPYTLLDYFALHHDKYLIIVDESHVSLPQFRGMFAGDRSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L +YGFRLPS +DNRPL  +E+    P  + VSATP + E++     I  QIIRPTGL
Sbjct: 361 EVLVDYGFRLPSALDNRPLMIDEFMNKAPHYMFVSATPAAQEIDIS-TTIAHQIIRPTGL 419

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP + I+ +  QVED++DEI      G R+L+TVLTK+MAE LT+YL +  I+V+YMHS
Sbjct: 420 LDPIITIKPSENQVEDLHDEIKKTVALGDRVLVTVLTKKMAEALTKYLADLGIKVQYMHS 479

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER +IIR LR+G FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT
Sbjct: 480 EIDAIERNQIIRGLRVGDFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQT 539

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN + +VILYA  IT S++ AI  TT RR  Q  +N+KH I P + K  + E + 
Sbjct: 540 IGRAARNEHGRVILYAQKITGSMERAIKTTTDRRAVQEAYNQKHGITPITTKRSLDENLK 599

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              LED +    +   +  +L   + K  ++ L  +M  AA  L FEEAAR+RDEI +++
Sbjct: 600 ---LEDPSELY-NRSKKAKTLPAAERKKLIEELNIKMREAAKKLEFEEAARLRDEIAKIR 655

Query: 795 S 795
            
Sbjct: 656 K 656


>gi|310778323|ref|YP_003966656.1| excinuclease ABC, B subunit [Ilyobacter polytropus DSM 2926]
 gi|309747646|gb|ADO82308.1| excinuclease ABC, B subunit [Ilyobacter polytropus DSM 2926]
          Length = 661

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/657 (51%), Positives = 484/657 (73%), Gaps = 2/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ ++Y P+GDQP AI ++ + I    K Q+LLGVTGSGKTFT+A +I+   RPAI+M
Sbjct: 1   MFKLHSNYKPTGDQPEAIKKISENIKENVKDQVLLGVTGSGKTFTVANIIKDTGRPAIIM 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLYSE+K+FFP NAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++ID++R
Sbjct: 61  APNKTLAAQLYSEYKSFFPENAVEYFVSYYDYYQPEAYIPSTDTFIEKDSSINDEIDKLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           ++AT +L+ R D I+V+SVS IYG+GS E+Y +M + + +   +E+K+ L  LV  +Y+R
Sbjct: 121 NAATAALINRRDVIIVASVSAIYGLGSPETYKKMTIPIDLKTGIERKKFLEKLVSLRYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIK 378
            DI   RG FR+ GD ++I+PS++E   +R+  +G+D+E ISE   LTG+K+R+ +E I 
Sbjct: 181 NDIAFERGKFRIKGDVVDIYPSYME-TGYRLEFWGDDLESISEINTLTGKKVRSGLERIS 239

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I   +HYVT    +   ++ IKE+LK+++ + E EG+LLEAQR++QR  YDLEM+   G 
Sbjct: 240 IMPATHYVTEENEIERIIEDIKEDLKIQIKKFESEGKLLEAQRIKQRTEYDLEMIREVGY 299

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSRYL G+ PGE P TL EY P+D L+F+DESH+ +PQI GMY+GD  RK TL 
Sbjct: 300 CKGIENYSRYLAGKEPGESPHTLLEYFPKDFLIFIDESHIAVPQIRGMYKGDRSRKETLV 359

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
             GFRLPS +DNRPLRFEE+  +   T+ VSATPG +E++  +G + EQ++RPTG+++P 
Sbjct: 360 ANGFRLPSALDNRPLRFEEFREIANQTVFVSATPGDYEMDVSKGQVAEQLVRPTGILEPL 419

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +++R    QV+D+ +E+ + +++  R+L+T LTK+MAE+LTEY     ++ +YMHS++ T
Sbjct: 420 IDVRPTANQVDDLLEEVRIRSEKKQRVLVTTLTKKMAEELTEYYIGFGVKAKYMHSDIDT 479

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LERIEIIR LR G+FDVLVGINLLREGLDIPE  LVA+L+ADKEGFLRS+ SLIQT+GRA
Sbjct: 480 LERIEIIRGLRRGEFDVLVGINLLREGLDIPEVSLVAVLEADKEGFLRSRRSLIQTMGRA 539

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  KVILY D +T S++ AI+ET RRR+ Q E+NK +NI+P++V  +I E +     
Sbjct: 540 ARNIEGKVILYGDVMTGSMKEAIEETKRRRKVQKEYNKTYNIDPKTVIREISEEVLNFDY 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                +      +++  SKK  +  +  L+K++ + ++ L+FE+A   RDE+ +L+ 
Sbjct: 600 GVDIDSYEKEKVKRVFTSKKDIEKEIGKLKKEIKILSEELDFEKAIIKRDEMIKLQE 656


>gi|291059535|gb|ADD72270.1| excinuclease ABC subunit B [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 677

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/677 (47%), Positives = 449/677 (66%), Gaps = 7/677 (1%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           I + +K +  F++   + P+GDQ AAI  L++G+H+  + Q L GVTGSGKTFT+A VI 
Sbjct: 3   ITDTAKHMKEFKLHASFQPAGDQIAAIDALVRGLHAGARFQTLKGVTGSGKTFTVANVIA 62

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +Q+P +V++ NK L+AQLY EFK FFP NAVEYFVSYYDYYQPE+YVP  D YIEK++S
Sbjct: 63  RVQKPTLVISHNKTLSAQLYREFKGFFPDNAVEYFVSYYDYYQPESYVPARDLYIEKDAS 122

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN +I+RMR SAT SL+ER D IVV++VSCIYG+G  ES+  + + +++   ++ ++L  
Sbjct: 123 INAEINRMRLSATFSLMERRDVIVVATVSCIYGLGLPESWRDLRIHVEVNQCLDLEDLKR 182

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV  QY+R D  +  G FRV GD IEIFP++LE+  +R+    + +  I   +P++G  
Sbjct: 183 QLVSLQYERNDAVLECGRFRVRGDVIEIFPAYLEEF-YRIECDWDRVVRIRRIHPVSGAV 241

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +R  E + +Y   H+V     +  AM  I++EL  RL++L +E +L EA RL+ R  YDL
Sbjct: 242 LREFEELTVYPAKHFVLKEDAIPRAMDRIRQELDERLVQLTQENKLAEAARLKTRTEYDL 301

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML   G C  IENYS  + GR  GEPP TL  Y P+D +LFVDESHVT+PQ+  MY GD
Sbjct: 302 EMLGEMGYCHGIENYSAPIAGRKSGEPPVTLLHYFPKDFVLFVDESHVTLPQLGAMYEGD 361

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK  L ++GFRLP   DNRPL+  E+  L    + +SATPG  E  Q    IVEQ+IR
Sbjct: 362 RVRKQNLIDFGFRLPCARDNRPLKDSEFEALLNQAVFISATPGVKERTQS-VQIVEQLIR 420

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DP +E+R    Q+ED+   +   + +  R L+  LTK+MAEDLT+Y     IR +
Sbjct: 421 PTGLLDPCIEVRKTDGQIEDICQRVKACSARNERSLVLTLTKKMAEDLTDYFNGLGIRTK 480

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSE++T+ER+EI+  LR G+ +VLVGINLLREG+D+PE   +AILDA+  GFLRS TS
Sbjct: 481 YVHSEIETIERVEILTSLRAGECEVLVGINLLREGIDLPEVAFIAILDANIVGFLRSTTS 540

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQ IGRAARN    V++YAD I+ +++ AI+ET RRR+ Q+ +N+ H I P+++K+ I 
Sbjct: 541 LIQIIGRAARNARGTVVMYADAISDAMREAIEETARRRKIQMAYNRAHGITPRTIKKSIE 600

Query: 731 EVI--DPILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           +++  +  + +DAA   ++     A     +    K  +++LR  M + A  L FEEAA 
Sbjct: 601 DILVREQEVKKDAARVQVAPLLRAADADVRTHAARKKMVQALRLHMKVCARELRFEEAAL 660

Query: 786 IRDEIKRLKSSPYFQGL 802
           IRD+I +L+      G+
Sbjct: 661 IRDKILQLQRQDEQNGV 677


>gi|254457128|ref|ZP_05070556.1| excinuclease ABC, B subunit [Campylobacterales bacterium GD 1]
 gi|207085920|gb|EDZ63204.1| excinuclease ABC, B subunit [Campylobacterales bacterium GD 1]
          Length = 660

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/663 (51%), Positives = 453/663 (68%), Gaps = 8/663 (1%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K    F++ + Y P+GDQP AI  L + I    + Q L GVTGSGKT+TMAKVIE ++ P
Sbjct: 2   KKEANFKVNSPYQPAGDQPTAIKVLSESILKGNRYQALEGVTGSGKTYTMAKVIENVKMP 61

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            I+M  NK LAAQLYSEF+ FFP+N +EYFVSYYDYYQPEAY+PR D +IEK+S+IN+++
Sbjct: 62  TIIMTHNKTLAAQLYSEFREFFPNNHIEYFVSYYDYYQPEAYIPRQDLFIEKDSAINDEL 121

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           +RMR S+T +LL  +D IV++SVS  YG+G  E Y  M+  L++GD + QK+LL  LV+ 
Sbjct: 122 ERMRLSSTANLLSYDDVIVIASVSANYGLGDPEEYLNMVQALEVGDEIPQKKLLLRLVEM 181

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y R D     G  RV G+S++I+P + E  A R+  FG++IE I  F  +  +K+   +
Sbjct: 182 GYSRNDTYFDSGHIRVNGESLDIYPPYFEQEAIRIEFFGDEIEAIYTFDIIDNKKLEEHK 241

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              IYA S +   +  +  A+K I+EEL  RL   +  G+LLE QRL+QR+ +DLEML+T
Sbjct: 242 KFTIYATSQFSVSQEKMAVAIKRIEEELDERLAYFQSAGKLLEHQRLKQRVEFDLEMLQT 301

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFH 492
           TG C+ +ENYSR LT + PGE P TL +Y     +D L+ VDESHV++PQ  GMY GD  
Sbjct: 302 TGMCKGVENYSRLLTNKKPGEAPFTLLDYFALNHKDYLVIVDESHVSLPQYRGMYAGDRA 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L +YGFRLPS +DNRPL+ +E+    P  + VSATP  +ELE    +   QIIRPT
Sbjct: 362 RKEVLVDYGFRLPSALDNRPLKADEYINKAPHYLFVSATPAEYELEMS-SVTAHQIIRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP +EI+ +  QVED++DEI + A +  RIL+TVLTK+MAE LT+YL +  I+V+YM
Sbjct: 421 GLLDPILEIKPSDNQVEDIHDEIKIIAAKNERILITVLTKKMAEALTKYLADLGIKVQYM 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++ T+ER +IIR LRLG+FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+T+LI
Sbjct: 481 HSDIDTIERNQIIRALRLGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSETALI 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGR ARN N +VILYA+ ITKS+Q AID TT RRE Q  +NK++ I P +   K    
Sbjct: 541 QTIGRGARNSNGRVILYANKITKSMQKAIDTTTSRREIQEAYNKENGITPTTTIRK---- 596

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           +D  L  +          +   +   + K   K L  +M  AA  LNFEEAAR+RDEI +
Sbjct: 597 LDANLKVEDHGDIYQKHKKMDKMPASEKKVITKELMLKMKQAAKELNFEEAARLRDEIMK 656

Query: 793 LKS 795
           +K 
Sbjct: 657 IKQ 659


>gi|292654206|ref|YP_003534103.1| excinuclease ABC subunit B [Haloferax volcanii DS2]
 gi|291371794|gb|ADE04021.1| excinuclease ABC subunit B [Haloferax volcanii DS2]
          Length = 698

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/665 (50%), Positives = 448/665 (67%), Gaps = 7/665 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AI  L +G      VQ LLGVTGSGKT T++ V+E +Q+P +V+A
Sbjct: 18  FRVDAPFDPAGDQPEAIEALARGFREGADVQTLLGVTGSGKTNTVSWVVEEIQKPTLVLA 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK  FP NAVEYFVSYYDYYQPEAY+ +TDTYI+K+ SINE+IDR+RH
Sbjct: 78  HNKTLAAQLYEEFKGLFPDNAVEYFVSYYDYYQPEAYIEQTDTYIDKDMSINEEIDRLRH 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL R+D IVV+SVS IYG+G  ++Y+ M ++L++G  +++ ELL +LV   Y+R 
Sbjct: 138 SATRSLLTRDDVIVVASVSAIYGLGDPKNYTDMSLRLEVGQGMDRDELLRALVDLNYERN 197

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   +GTFRV GD++E+FP +    A R+  +G++I+ + +  PL G+   +   + ++
Sbjct: 198 DVDFRQGTFRVRGDTVEVFPMYG-RYAVRIEFWGDEIDRMLKLDPLEGEVKSSEPAVLVH 256

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HY  P   L  A+  I+E ++ R+   +++G L+ AQR+E+R T+D+EML  TG C 
Sbjct: 257 PAEHYSIPEEQLEGAISEIEELMEQRVKHFQRQGDLVAAQRIEERTTFDIEMLRETGHCS 316

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L+ R PG+ P TL +Y P+D L  +DESHVT+PQI G Y GD  RK +L E 
Sbjct: 317 GIENYSVHLSDREPGDAPYTLLDYFPDDFLTVIDESHVTLPQIKGQYAGDKSRKDSLVEN 376

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+  DNRPL FEE+      T+  SATPG +E E     IVEQI+RPT LVDP VE
Sbjct: 377 GFRLPTAYDNRPLTFEEFEETVGQTLFASATPGDYEREHSDQ-IVEQIVRPTHLVDPKVE 435

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +  A  QV+D+   I+    +  R+L+T LTKRMAEDLTEYL E  + V YMH E  TLE
Sbjct: 436 VTEATGQVDDLMARIDERIDRDERVLVTTLTKRMAEDLTEYLEEAGVDVAYMHDETDTLE 495

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E+IR LRLG  DVLVGINLLREGLDIPE  LVAILDAD++GFLRS+T+L+QT+GRAAR
Sbjct: 496 RHELIRSLRLGDIDVLVGINLLREGLDIPEVSLVAILDADQQGFLRSETTLVQTMGRAAR 555

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +V+LYAD +T +++ AI ET RRR  Q E N++H   P ++++++ E   P     
Sbjct: 556 NVNGEVVLYADEMTDAMEAAISETQRRRRIQQEFNEEHGYTPTTIEKEVGETNLP----- 610

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
            + T+    +        +    +  L  +M  AADNL FE AA IRD I+ L+      
Sbjct: 611 GSKTDTRGVSGDEPADADEAVEQIAFLEDRMQEAADNLEFELAADIRDRIQNLRREFDVD 670

Query: 801 GLDDS 805
            L+D 
Sbjct: 671 ALEDG 675


>gi|303237176|ref|ZP_07323746.1| excinuclease ABC, B subunit [Prevotella disiens FB035-09AN]
 gi|302482563|gb|EFL45588.1| excinuclease ABC, B subunit [Prevotella disiens FB035-09AN]
          Length = 680

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/675 (47%), Positives = 465/675 (68%), Gaps = 19/675 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI QL +GI   +K Q+LLGVTGSGKTFTMA VI  + +P ++++
Sbjct: 3   FELTSKYKPTGDQPEAIRQLTEGIERGDKSQVLLGVTGSGKTFTMANVIANVGKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFPHNAVEY+VSYYDYYQPEAY+P TDTYIEK+ +IN++ID++R 
Sbjct: 63  HNKTLAAQLYEEMKGFFPHNAVEYYVSYYDYYQPEAYMPTTDTYIEKDLAINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA  SLL  R D +VVSSVSC+YG+G   +    +++LK G  +++ E L  L+   Y R
Sbjct: 123 SAVSSLLSGRKDVVVVSSVSCLYGMGGPVAMKDSVIRLKKGQIIDRNEFLRRLINALYVR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI + RG FRV GD+++I  ++ +++  R++ + ++I+ I E   ++  ++   E  +I
Sbjct: 183 NDIDLQRGNFRVKGDTVDIAMAYSDNI-LRITWWDDEIDAIEEVDAVSYHRLGTFEAYEI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  + +VT +     A++ I+++L++++    + G  ++AQR+++R+ YD+EM++  G C
Sbjct: 242 YPANLFVTTKEQTEGAIRQIQDDLRLQIDFFNEIGDNIKAQRIKERVEYDMEMIKELGHC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G+ P  L ++ P D+L+ +DESHV++PQIS MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGREAGQRPYCLLDFFPSDNLIMIDESHVSVPQISAMYGGDRARKKNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLP+  DNRPLRFEE++ L    I VSATP ++ELE+ +G++VEQ+IRPTGL+DP +
Sbjct: 362 FGFRLPAAFDNRPLRFEEFHSLINQIIYVSATPANFELEEAEGVVVEQLIRPTGLLDPEI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++++ +EI + A++  R+L+T LTKRMAE+LTEYL    +R  Y+HS+V +L
Sbjct: 422 EVRPSENQIDNLMEEILIRAEKDERVLVTTLTKRMAEELTEYLLNHEVRTTYIHSDVASL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R++II D R+G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAA
Sbjct: 482 DRVKIINDFRIGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI--- 736
           RNVN +VI+YAD IT S+Q  IDET RRREKQL++N++++I P  +   I + +      
Sbjct: 542 RNVNGRVIMYADKITDSMQKTIDETARRREKQLKYNEENHITPTQIVRTIKDTLPSSENS 601

Query: 737 --------------LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
                           E    T+I  D   + ++K + +  +++    M  AA NL+F +
Sbjct: 602 ATIVPINKGKAPQAYSEPTFETSIVADPIVMKMTKAQLEKSIQNTTLLMQEAAKNLDFLQ 661

Query: 783 AARIRDEIKRLKSSP 797
           AA+ RDEI RL++  
Sbjct: 662 AAQYRDEILRLQAEL 676


>gi|294056378|ref|YP_003550036.1| excinuclease ABC, B subunit [Coraliomargarita akajimensis DSM
           45221]
 gi|293615711|gb|ADE55866.1| excinuclease ABC, B subunit [Coraliomargarita akajimensis DSM
           45221]
          Length = 687

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/656 (50%), Positives = 456/656 (69%), Gaps = 3/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P GDQP AI  L+  + +  K Q LLGVTGSGKTF+MA VI+ +QRPA++++
Sbjct: 3   FKLSSEYAPQGDQPEAIRSLVDSVRAGNKYQTLLGVTGSGKTFSMANVIQELQRPALIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P+TDTYIEK+SSIN++I+R+R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPDNAVEYFVSYYDYYQPEAYIPQTDTYIEKDSSINDEIERLRI 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +A+ SL+ R D IV++SVSCIYG+GS E +  M++ L  G  + +   L+ LV+  Y+R 
Sbjct: 123 AASSSLISRRDVIVIASVSCIYGLGSPEDFKDMMIPLSRGMELSRDTFLARLVEILYERN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD ++I+P+++E  A R+  +G++++ I E  P+TG+   +++   +Y
Sbjct: 183 DVDFKRGTFRVRGDVVDIYPAYME-TAIRLEFWGDELDAIFELDPVTGETSGSLDMFHLY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + YVTP+  +  A+  I++EL  R+   E +  LLEAQR++ R  YD+E+L+  G C 
Sbjct: 242 PATQYVTPKDKIERAVGGIRQELDERIAWFESQNLLLEAQRIKMRTEYDIELLQEMGFCT 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGE P  L ++ PED LLFVDESHVT+PQ+  MY GD  RK  L +Y
Sbjct: 302 GIENYSRYLSGRKPGERPFCLIDFFPEDFLLFVDESHVTLPQVRAMYNGDRARKERLVQY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRP + EE+  +   TI VSATP + E +     I EQ+IRPTGL+DP +E
Sbjct: 362 GFRLPSALDNRPQKIEEFESITGQTIYVSATPAAHEFDVS-TTIAEQVIRPTGLLDPELE 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + QVEDV  E+  A+  G R L+T LTKRM+EDLT+YL E ++ V Y+HS++  +E
Sbjct: 421 LRPIKGQVEDVIGEVRKASDAGERTLITTLTKRMSEDLTDYLREADLSVEYLHSDIDAIE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EI+R LR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLRS TSLIQT GRAAR
Sbjct: 481 RVEILRRLRKGDFDVLIGVNLLREGLDLPEVALVAILDADKEGFLRSSTSLIQTAGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +   +VILYADTIT SI+  ++ T  RREKQ+ +N+ H I P+SV+  + E +     + 
Sbjct: 541 HEKGRVILYADTITDSIKHTLETTGYRREKQMAYNEAHGITPRSVERGLDESLHAPGSKR 600

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +           S   +     +  + ++M  AA  L FE+AA IRD+I  L+S 
Sbjct: 601 YSQEEDEPLIAAES-DDRDVAEVIAEMEEEMLEAARKLEFEKAALIRDQIDILQSG 655


>gi|110596901|ref|ZP_01385191.1| excinuclease ABC, B subunit [Chlorobium ferrooxidans DSM 13031]
 gi|110341588|gb|EAT60048.1| excinuclease ABC, B subunit [Chlorobium ferrooxidans DSM 13031]
          Length = 683

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/682 (48%), Positives = 446/682 (65%), Gaps = 14/682 (2%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    +++ + Y P+GDQP AI  L +G+ +    Q LLGVTGSGKTFT++ VI  + +P
Sbjct: 2   QGSDLYRLVSPYSPTGDQPKAIEALSEGVLTGNPYQTLLGVTGSGKTFTISNVIARVNKP 61

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +VM+ NK LAAQLY E K FFP NAVEYF+SYYD+YQPEAY+P  D YI K+  IN++I
Sbjct: 62  VLVMSHNKTLAAQLYGELKQFFPDNAVEYFISYYDFYQPEAYLPALDKYIAKDLRINDEI 121

Query: 256 DRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           +R+R  AT SLL  R D IVVSSVSCIYG+GS E +   I++L+ G   ++   L  L+ 
Sbjct: 122 ERLRLRATSSLLSGRKDVIVVSSVSCIYGLGSPEDWKAQIIELRSGMEKDRDLFLKELIA 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R DI    G FRV GD I++ P+H E++A RV  FGN+IE +  F   +G+ +   
Sbjct: 182 LHYVRDDIDPAPGKFRVRGDIIDLVPAH-EELALRVEFFGNEIESLQTFDIHSGEVLGVD 240

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
               IY    +V     L  AM  I+ EL  +L     E RLLEA+RLE+R  YDLEM++
Sbjct: 241 PYAFIYPARQFVAEEAKLKEAMFAIENELAGQLNWFRAENRLLEARRLEERTRYDLEMMK 300

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSR+L+GRN GE P  L +Y PE+ L+ +DESHVT+PQI GMY GD  RK
Sbjct: 301 ELGYCSGIENYSRHLSGRNAGERPYCLLDYFPEEYLVVIDESHVTLPQIRGMYGGDRSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L E+GFRLPS +DNRPLRFEE+  + P  I VSATP   EL +  G++VEQ++RPTGL
Sbjct: 361 TILVEHGFRLPSALDNRPLRFEEFEEMAPQVICVSATPSEHELTRSGGVVVEQLVRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DPPVE+R  + Q++++  EI L   +G + L+  LTKRMAEDL ++  +  IR RY+HS
Sbjct: 421 LDPPVEVRPVKGQIDNLLAEIRLHTAKGNKALVMTLTKRMAEDLHDFFRKTGIRSRYLHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+K+LERI+I+R+LR+G  DVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL+Q 
Sbjct: 481 EIKSLERIQILRELRVGDIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQI 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
            GRAARNV   V+LYAD +T+SI+  +DET RRR  Q  +N++H I P+S+ + + +++D
Sbjct: 541 AGRAARNVEGFVVLYADVVTRSIREVLDETARRRTIQQRYNEEHGIVPRSIIKSVDQILD 600

Query: 735 PILLEDAATTNISID------------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
              + DA                        S++  +G A    LR +M  AA ++ +E+
Sbjct: 601 TTGVADAEERYRRKRFGLEPKPERMLAGLLESMTPAEGYAMAAELRIEMQEAAVHMEYEK 660

Query: 783 AARIRDEIKRLKSSPYFQGLDD 804
           AA +RDEI +L+     +   D
Sbjct: 661 AAYLRDEIAKLEQVIESRQPSD 682


>gi|323342415|ref|ZP_08082647.1| excision endonuclease subunit UvrB [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463527|gb|EFY08721.1| excision endonuclease subunit UvrB [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 663

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/662 (49%), Positives = 449/662 (67%), Gaps = 2/662 (0%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K+   F++ + + P GDQ  AI +L +GI   +K Q+LLG TG+GKTFT+++VI  + RP
Sbjct: 4   KEEHKFELVSKFDPKGDQVRAIGELTQGILDGKKEQVLLGATGTGKTFTVSQVIAKLNRP 63

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V   NK LA QLYSEFK FFP+N VEYFVS +DYYQPEAY+P +DTYIEK S IN+++
Sbjct: 64  TLVFVHNKTLAGQLYSEFKEFFPNNRVEYFVSNFDYYQPEAYLPGSDTYIEKSSMINQEL 123

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D +RH+A  S+L+R D I+V+SV+ IY       Y +M+  +++G  + +++L+  LVK+
Sbjct: 124 DMLRHAAQNSVLQRRDTIIVASVASIYATADPSYYKEMLYVMRVGQEITREDLMRDLVKR 183

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           QY R DI    GTFRV GD IE+     +D+  RV  FG++I+ I E   +TG       
Sbjct: 184 QYIRNDIEQSVGTFRVRGDVIEVVRGDRDDIVVRVEFFGDEIDRIVEVDRITGNVREGYL 243

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              I+  + Y      +  A   I+ EL  RL   E E +L+E QRL+QR  YDLE L  
Sbjct: 244 VYDIFPANQYARDMDQIRPAADRIEAELHERLAYFESENKLVEHQRLKQRTEYDLEALRE 303

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  +ENYS ++ GR+P + P TLF+Y P+D L  VDESHV++PQ+ GMY GD  RK 
Sbjct: 304 FGMCSGVENYSMHIDGRDPNQRPYTLFDYFPDDYLFIVDESHVSLPQVRGMYNGDQSRKR 363

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL EYGFRLPS M+NRP+ FEE+  ++  TI VSATPG +ELE+    +VEQIIRPTGL+
Sbjct: 364 TLVEYGFRLPSAMNNRPMTFEEFTSVQKQTIYVSATPGDYELEKVNHQVVEQIIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EI+ ++ QV+D+ D+I    ++  R+L+T LT +MA+DLT YL E  I+V Y+H E
Sbjct: 424 DPTIEIKKSQGQVDDLIDQILERRERDERVLITTLTVKMAQDLTNYLLETGIKVAYLHHE 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            KTLERIEI+RDLRLGK+DV+VGINLLREGLD+PE  L+AILDADKEGFLRS  SL+Q +
Sbjct: 484 TKTLERIEILRDLRLGKYDVVVGINLLREGLDLPEVSLIAILDADKEGFLRSYRSLVQIV 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN N  VI+YAD IT S++  IDET RRR+ Q+ +N+K+ I PQ++K++I +VI  
Sbjct: 544 GRAARNSNGHVIMYADRITDSMKKTIDETKRRRDIQIAYNEKNGITPQTIKKEIRDVIAG 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              E A  T+   + +     KK     ++ L K+M  AA  L+FE AA++RD +  +K+
Sbjct: 604 --KETAELTHRIRNNKGKRKDKKAVDELIQKLEKEMREAAALLDFERAAQLRDIVMEMKA 661

Query: 796 SP 797
           S 
Sbjct: 662 SL 663


>gi|78188292|ref|YP_378630.1| excinuclease ABC subunit B [Chlorobium chlorochromatii CaD3]
 gi|90110879|sp|Q3ATT8|UVRB_CHLCH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|78170491|gb|ABB27587.1| Excinuclease ABC subunit B [Chlorobium chlorochromatii CaD3]
          Length = 681

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/674 (48%), Positives = 450/674 (66%), Gaps = 14/674 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +Q+ + Y P+GDQP AI  L++G+      Q LLGVTGSGKTFT++ VI  + RP +VM+
Sbjct: 9   YQLVSPYQPAGDQPKAIEALVQGVRDGRHWQTLLGVTGSGKTFTISNVIAQLNRPVLVMS 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFPHNAVEYF+SYYD+YQPEAY+P  D YI K+  IN++I+R+R 
Sbjct: 69  HNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYLPSLDKYIAKDLRINDEIERLRL 128

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT +LL  R D IVVSSVSCIYG+GS E +   I++L+ G   ++ E L  L+   Y R
Sbjct: 129 RATSALLSGRKDVIVVSSVSCIYGLGSPEEWKAQIIKLRAGMEKDRDEFLRELISLHYLR 188

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+    G FRV GD+I++ P+H E++A R+  FG++IE +  F   TG+ + + E   I
Sbjct: 189 DDVQPTSGRFRVRGDTIDLVPAH-EELALRIEFFGSEIESLQTFDIQTGEILGDDEYAFI 247

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +V     L  AM  I+ EL  RL  L  E R +EA+RLE+R  YDLEM++  G C
Sbjct: 248 YPARQFVADEEKLQVAMLAIENELAGRLNLLRSENRFVEARRLEERTRYDLEMMKELGYC 307

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+++GR  GE P  L +Y PED ++ VDESHVT+PQI GMY GD  RK  L E
Sbjct: 308 SGIENYSRHISGRPAGERPICLLDYFPEDYMVVVDESHVTLPQIRGMYGGDRSRKTVLVE 367

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEE+  + P  I +SATPG  EL +  G +VE ++RPTGL+DPPV
Sbjct: 368 HGFRLPSALDNRPLRFEEYEEMVPQVICISATPGEHELMRSGGEVVELLVRPTGLLDPPV 427

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + Q++++  EI      G + L+  LTKRM+EDL ++  +  IR RY+HSE+K+L
Sbjct: 428 EVRPVKGQIDNLLAEIRHHISIGHKALVMTLTKRMSEDLHDFFRKAGIRCRYLHSEIKSL 487

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++I+R+LR G  DVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL+Q  GRAA
Sbjct: 488 ERMQILRELRAGDIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 547

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++  V+LYAD IT+SIQ  +DET RRR  Q  +N++H I P+S+ + + +++D   + 
Sbjct: 548 RNLDGFVVLYADVITRSIQEVLDETARRRAIQQRYNEEHGITPRSIVKSVDQILDTTGVA 607

Query: 740 DAAT------------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           DA                  +     +L+ +KG A ++ LR +M  AA+++ +E+AA +R
Sbjct: 608 DAEERYRRRRFGLEPKPERVLSGYADNLTPEKGYAIVEGLRLEMQEAAEHMEYEKAAYLR 667

Query: 788 DEIKRLKSSPYFQG 801
           DEI +++      G
Sbjct: 668 DEITKMEQVLKKDG 681


>gi|257387213|ref|YP_003176986.1| excinuclease ABC subunit B [Halomicrobium mukohataei DSM 12286]
 gi|257169520|gb|ACV47279.1| excinuclease ABC, B subunit [Halomicrobium mukohataei DSM 12286]
          Length = 684

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/674 (50%), Positives = 451/674 (66%), Gaps = 8/674 (1%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
            +     T F++   + P+GDQP AI QL+ G       Q LLGVTGSGKT T++  IE 
Sbjct: 9   PDRPDAETAFRVDAPFEPAGDQPDAIEQLVDGYRRGMDKQTLLGVTGSGKTNTVSWAIEE 68

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +Q+P +V+A NK LAAQLY EF++ FP NAVEYFVSYYDYYQPEAYV +TDTYI+K++SI
Sbjct: 69  LQQPTLVIAHNKTLAAQLYEEFRSLFPDNAVEYFVSYYDYYQPEAYVEQTDTYIDKDASI 128

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           N++IDR+RHSATRSLL R+D IVV+SVS IYG+G   +Y  M ++L+ G  +E+ ELL  
Sbjct: 129 NDEIDRLRHSATRSLLTRDDVIVVASVSAIYGLGDPRNYVDMSLRLEEGQQIERDELLGQ 188

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV   Y+R D+   +GTFRV GD++EI+P +    A RV M+G++I+ + +  PL G+ +
Sbjct: 189 LVDLNYERNDVDFTQGTFRVRGDTVEIYPMYG-RYAVRVDMWGDEIDRLVKMDPLEGEVV 247

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
                + ++   HY  P   L  A++ I++ L  R+   E++G  + AQR+E+R T+DLE
Sbjct: 248 SQEPAVLLHPAEHYSIPEQRLQRAIEEIEDMLADRIRYFERQGDAVAAQRIEERTTFDLE 307

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M++ TG C  IENYS +L+ R  GE P TL +Y PED L  VDESH TIPQI G + GD 
Sbjct: 308 MMKETGYCSGIENYSVHLSDRESGEAPYTLLDYFPEDFLTVVDESHQTIPQIKGQFEGDK 367

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK +L E GFRLP+  DNRPL FEE+      T+ VSATPG +E E+  G +VEQI+RP
Sbjct: 368 SRKESLVENGFRLPTAFDNRPLTFEEFEEKTDRTLYVSATPGDYEREES-GQVVEQIVRP 426

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           T LVDP +E+  A  QV+D+ + I     +  R+L+T LTKRMAEDLTEYL E  + V Y
Sbjct: 427 THLVDPAIEVADASGQVQDLLERIESMPDE-ERVLVTTLTKRMAEDLTEYLEESGVDVAY 485

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH E  TLER E+IR LRLG+  VLVGINLLREGLDIPE  LVAILDAD+EGFLRS+T+L
Sbjct: 486 MHDETDTLERHELIRSLRLGEIQVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTL 545

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           +QT+GRAARNVN +V+LYAD  + +++ AI+ET RRR+ Q  +N++H   P +++++I E
Sbjct: 546 VQTMGRAARNVNGEVVLYADDTSDAMRSAIEETQRRRQIQQAYNEEHGFEPTTIEKEIGE 605

Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
              P      A T+ S  A        +    +  L  +M  AADNL FE AA IRD I+
Sbjct: 606 SSLP-----GAETDTSDVAGDGPADADEAARQIDRLEARMAEAADNLEFELAADIRDRIR 660

Query: 792 RLKSSPYFQGLDDS 805
            L+      G DD 
Sbjct: 661 ELREEFELDGGDDG 674


>gi|257469334|ref|ZP_05633428.1| excinuclease ABC subunit B [Fusobacterium ulcerans ATCC 49185]
 gi|317063581|ref|ZP_07928066.1| excinuclease ABC subunit B [Fusobacterium ulcerans ATCC 49185]
 gi|313689257|gb|EFS26092.1| excinuclease ABC subunit B [Fusobacterium ulcerans ATCC 49185]
          Length = 660

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/658 (52%), Positives = 475/658 (72%), Gaps = 5/658 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ + Y P+GDQP AI ++   I++  K Q+LLGVTGSGKTFT+A +IE  QRPA+++
Sbjct: 1   MFKIHSKYSPTGDQPEAIKKITDNINNGVKNQVLLGVTGSGKTFTVANIIEKTQRPALIL 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLYSE+K+FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SSIN++I+++R
Sbjct: 61  APNKTLAAQLYSEYKSFFPDNAVEYFVSYYDYYQPEAYIATTDTYIEKDSSINDEIEKLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT +L+ R D I+V+SVS IYG+GS E+Y +M + +     +++KEL+  L+  +Y+R
Sbjct: 121 HAATAALMNRRDVIIVASVSAIYGLGSAETYRKMTIPIDRQTGIDRKELIERLISIRYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIK 378
            DI   RG FR+ GD I+I+PS++E   +R+  +G+D+EEISE   LTGQKIR  +E I 
Sbjct: 181 NDIAFERGKFRIKGDVIDIYPSYME-TGYRLEYWGDDLEEISEINTLTGQKIRKNLERIV 239

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  + Y+T        +  I+++LK+ +   EK G+LLEAQRL+QR  YD+EM+   G 
Sbjct: 240 LYPATQYLTADGDNERILAEIQKDLKIEVEAFEKRGKLLEAQRLKQRTEYDIEMIREIGY 299

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSRYL+G+  GE P TL EY P+D L+F+DESH++IPQI GMY GD  RK  L 
Sbjct: 300 CKGIENYSRYLSGKKEGETPDTLLEYFPKDFLIFIDESHISIPQIRGMYNGDRARKTALV 359

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E GFRL + +DNRPL+FEE+  +   ++ VSATPG +E+E   G I EQ+IRPTG++DP 
Sbjct: 360 ENGFRLKAALDNRPLKFEEFRKISDQSVFVSATPGDFEVESSHGHIAEQLIRPTGILDPI 419

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R  + QV+D+ +EI + A +  R+L+T LTK+MAE+LTEY     +RV+YMHS++ T
Sbjct: 420 IEVRPTKNQVDDLLEEIRIRADKKERVLVTTLTKKMAEELTEYYLGFGVRVKYMHSDIDT 479

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LERI+II+ LR G+FD LVGINLLREGLDIPE  LVAIL+ADKEGFLRS+ SL+QTIGRA
Sbjct: 480 LERIDIIKGLRKGEFDALVGINLLREGLDIPEVSLVAILEADKEGFLRSRRSLVQTIGRA 539

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-MEVIDPIL 737
           ARN+  +VILY D +T S++ AIDET RRR+ Q E+N  +NI+P+++ ++I  ++I+   
Sbjct: 540 ARNIEGRVILYGDVMTDSMKQAIDETNRRRKIQNEYNVFNNIDPKTIVKEISEDLINLDY 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             D   T           S+K  +  +  L+KQ+   +  L+FE A   RDE+ +LK 
Sbjct: 600 GLDINETEGKDKKTFT--SRKDIEKEIIKLQKQIAKLSKELDFENAIIKRDEMTKLKK 655


>gi|298346802|ref|YP_003719489.1| excision endonuclease subunit B [Mobiluncus curtisii ATCC 43063]
 gi|304389493|ref|ZP_07371456.1| excision endonuclease subunit UvrB [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315656739|ref|ZP_07909626.1| excision endonuclease subunit UvrB [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236863|gb|ADI67995.1| excision endonuclease subunit B [Mobiluncus curtisii ATCC 43063]
 gi|304327303|gb|EFL94538.1| excision endonuclease subunit UvrB [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315492694|gb|EFU82298.1| excision endonuclease subunit UvrB [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 723

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/710 (49%), Positives = 470/710 (66%), Gaps = 45/710 (6%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
             +  ++    ++ ++Y PSGDQP AIA+L + I+S EK  +LLG TG+GKT T A +IE
Sbjct: 8   PRDLVENPIPLEVVSEYTPSGDQPEAIAELAERINSGEKDVVLLGATGTGKTATTAWLIE 67

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +V+ PNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAYVP+TDTYIEK+S+
Sbjct: 68  KLQRPTLVLEPNKTLAAQLTAEFRELLPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSA 127

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN++++R+RHSAT SLL R D +VVSSVSCIYG+G+ E Y    + L  G  +E+++L+ 
Sbjct: 128 INDEVERLRHSATNSLLTRRDVVVVSSVSCIYGLGTPEEYVSRGIHLTRGMQIERQDLIK 187

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V+ QY R D+   RG FRV GD+I+I P + E++  RV MFG++I+ ++  +P+TG  
Sbjct: 188 RFVQMQYNRNDVEFTRGNFRVRGDTIDIIPMY-EELGVRVEMFGDEIDALALLHPVTGAT 246

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +  V  I ++  SHYV     +  A+  I+ EL+ R      +G+LLE QRL  R TYDL
Sbjct: 247 LHEVNEIYVFPASHYVAGPERMERALAGIESELEERCKWFHDQGKLLEEQRLRMRTTYDL 306

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML   G C  IENYS ++ GR PGEPP TL +Y PED LL +DESHVT+PQI GM+ GD
Sbjct: 307 EMLRQIGMCAGIENYSLHIDGRQPGEPPHTLLDYFPEDFLLVIDESHVTVPQIGGMFEGD 366

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS MDNRPL++EE+      T+ +SATPG +EL    G +VEQIIR
Sbjct: 367 MSRKRTLVDFGFRLPSAMDNRPLKWEEFQDRIGQTVYLSATPGDYELGLSDG-VVEQIIR 425

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++    Q++D+ ++I L  +   R+L+T LTKRMAEDLT YL +R IRV 
Sbjct: 426 PTGLVDPKIVVKPVEGQIDDLMEQIRLRTEADERVLVTTLTKRMAEDLTTYLAQRGIRVE 485

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R LR G+FDVLVGINLLREGLD+PE  LV+ILDADK+GFLRS  S
Sbjct: 486 YLHSDVDTLRRVELLRSLRQGEFDVLVGINLLREGLDLPEVSLVSILDADKQGFLRSTKS 545

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD ++ +++ AIDET RRR KQ+ +N+ H I+PQ +++KI 
Sbjct: 546 LIQTIGRAARNVHGEVHMYADAVSDAMREAIDETERRRHKQIAYNEAHGIDPQPLRKKIS 605

Query: 731 EVIDPILLEDAATTNI------------------------------------SIDAQQLS 754
           +V D +  ED  T  +                                     ++A +  
Sbjct: 606 DVTDMLAREDIDTAELLGTGYRQPDQKPSAAARSAAQDAAAARAALEVINRARVNATEDQ 665

Query: 755 LSKK-------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            S+           + +  L  QMH AA  L FE AAR+RDEI  LK   
Sbjct: 666 PSQAGAHENTVDLPSLVAELTDQMHTAASELRFELAARLRDEIADLKKEI 715


>gi|255321517|ref|ZP_05362675.1| excinuclease ABC, B subunit [Campylobacter showae RM3277]
 gi|255301373|gb|EET80632.1| excinuclease ABC, B subunit [Campylobacter showae RM3277]
          Length = 658

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/661 (49%), Positives = 458/661 (69%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + PS DQ  A+A ++  + S  K Q LLGVTGSGKTFTMA VI+ +  P +
Sbjct: 1   MKNFEISSKFSPSEDQARAVANIVASVRSGNKYQTLLGVTGSGKTFTMANVIKELNMPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M  NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SS+NE+++R
Sbjct: 61  IMTHNKSLAAQLYSEFKGFFPKNHVEYFISYYDYYQPEAYIPRQDLFIEKDSSVNEELER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D + V+SVS  YG+G+   Y  M+  L +G+++ Q+ LL  LV   Y
Sbjct: 121 LRLSATASLLSFDDVVCVASVSANYGLGNPSEYQGMVAYLGVGENINQRALLQKLVDMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR D    RG FRV GD ++++P++  D A R+  FG++I+ +  F  L  +K+++V   
Sbjct: 181 KRNDNYFDRGDFRVNGDVVDVYPAYWGDEALRIEFFGDEIDAMYHFDVLENKKLKDVGKF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S ++     L  A+K I+EEL+ RL E  ++G+L+EAQRL+QR+ +DLEM+ +TG
Sbjct: 241 TLYATSQFIVGADRLKIAIKQIEEELEERLKEFNEQGKLVEAQRLKQRVEFDLEMMSSTG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+LTG+ PGE P ++F+Y     +D L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 MCKGIENYARHLTGQKPGETPYSMFDYFELGGKDYLVIVDESHVSLPQFRGMYAGDRSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L EYGFRLPS +DNRPL+F+E+   R   + VSATP  +E+    G + EQI+RPTGL
Sbjct: 361 EVLVEYGFRLPSALDNRPLKFDEFINKRAKFLFVSATPNEYEINLSCGHVYEQILRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +EI+ +  QVE ++DE     ++  R+L+TVLTK+MAE+L+ Y  E  I+V+YMHS
Sbjct: 421 LDPLIEIKDSENQVEILFDEAKKTIERNERVLVTVLTKKMAEELSRYYTELGIKVKYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER EIIR LR G+FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT
Sbjct: 481 DIDAVERNEIIRGLRSGEFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN +V+++A  ITKS+Q A+D T  RR+ Q E+N+ H I P+S    I E + 
Sbjct: 541 MGRAARNVNGRVLMFAKKITKSMQEAMDTTLARRKMQEEYNRAHGITPRSASRNIEESLH 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                +  T  +   A    +   +  + +K LRKQM  AA+ L FE+AA +RDEI +++
Sbjct: 601 ----VEDGTEILRKGANLEKMPASERASIIKELRKQMLEAAEQLEFEKAAALRDEIAKIR 656

Query: 795 S 795
            
Sbjct: 657 K 657


>gi|289581736|ref|YP_003480202.1| excinuclease ABC subunit B [Natrialba magadii ATCC 43099]
 gi|289531289|gb|ADD05640.1| excinuclease ABC, B subunit [Natrialba magadii ATCC 43099]
          Length = 686

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/671 (49%), Positives = 448/671 (66%), Gaps = 7/671 (1%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
            +       F++   + P+GDQP AI QL  G +S  + Q LLGVTGSGKT T++  IE 
Sbjct: 10  PDRPDADHPFEVDAPFEPAGDQPEAIEQLADGFNSGMEKQTLLGVTGSGKTNTVSWTIEE 69

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +Q+P +V+A NK LAAQLY EF+N FP NAVEYFVSYYDYYQPEAYV +TDTYI+K++SI
Sbjct: 70  VQKPTLVIAHNKTLAAQLYEEFRNLFPENAVEYFVSYYDYYQPEAYVEQTDTYIDKDASI 129

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           N++IDR+RHSATRSLL R D IVV+SVS IYG+G   +Y  M ++L++G+ V + +LL  
Sbjct: 130 NDEIDRLRHSATRSLLTREDVIVVASVSAIYGLGDPRNYIDMSLRLEVGEEVGRDDLLKQ 189

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV   Y+R D+   +GTFRV GD++EI+P +    A RV ++G++I+ + +  PL G   
Sbjct: 190 LVDLNYERNDVDFTQGTFRVRGDTVEIYPMYG-RYAVRVELWGDEIDRMVKVDPLEGTTQ 248

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
            + + + ++   HY  P P L  AM  I+++L  R+   ++ G ++  QR+E+R T+DLE
Sbjct: 249 GDQQAVLVHPAEHYSIPEPKLERAMDEIRDDLDSRISYFDRTGDMIAGQRIEERTTFDLE 308

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M++ TG C  IENYS YL+ R  GE P TL +Y P+D L  +DESH TIPQI G Y GD 
Sbjct: 309 MMQETGYCSGIENYSVYLSDRESGEAPYTLLDYFPDDFLTVIDESHQTIPQIRGQYAGDK 368

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK +L E GFRLP+  DNRPL FEE+      T+ VSATP  +E E  +  I EQI+RP
Sbjct: 369 SRKDSLVENGFRLPTAYDNRPLTFEEFEEKTDQTLYVSATPSDYEREHSE-RIAEQIVRP 427

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           T LVDP + +  A  Q++D+ D I+    +  R L+T LTKRMAEDLTEYL E  + V Y
Sbjct: 428 THLVDPEISVSPASGQIDDLMDRIDDRIDRDERTLVTTLTKRMAEDLTEYLEEAGVNVEY 487

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH E  TLER EIIR LRLG+ DVLVGINLLREGLDIPE  LVAILDAD+EGFLRS+T+L
Sbjct: 488 MHDETDTLERHEIIRSLRLGEIDVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTL 547

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           +QT+GRAARNVN +VILYAD  + +++ AI+ET RRR  Q E+N++H + P ++ + + E
Sbjct: 548 VQTMGRAARNVNGEVILYADDPSNAMKSAIEETKRRRRIQQEYNEEHGLEPTTIDKAVSE 607

Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
              P      + T+ S  + +    + +   ++  L  +M  AA NL FE AA IRD I+
Sbjct: 608 TNLP-----GSKTDTSQVSGRELEDEDEAARYIDELETRMDEAASNLEFELAADIRDRIR 662

Query: 792 RLKSSPYFQGL 802
            ++      G 
Sbjct: 663 EVREEFELAGG 673


>gi|237736951|ref|ZP_04567432.1| excinuclease ABC subunit B [Fusobacterium mortiferum ATCC 9817]
 gi|229420813|gb|EEO35860.1| excinuclease ABC subunit B [Fusobacterium mortiferum ATCC 9817]
          Length = 667

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/660 (50%), Positives = 468/660 (70%), Gaps = 3/660 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
               F++ + Y P GDQP AI ++++ I+     Q+LLGVTGSGKTFT+A +I+   RPA
Sbjct: 5   GDKMFKLHSKYTPMGDQPEAIKKIVENINDGIADQVLLGVTGSGKTFTIANIIKETNRPA 64

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLYSE+K+FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SSIN++I+
Sbjct: 65  LILAPNKTLAAQLYSEYKSFFPENAVEYFVSYYDYYQPEAYIAVTDTYIEKDSSINDEIE 124

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++R +AT +L+ R D I+V+SVS IYG+GS E+Y +M + +     + +KEL+  L+  +
Sbjct: 125 KLRQAATAALINRRDVIIVASVSAIYGLGSAETYKKMTIPIDRQTGIGRKELIQRLISIR 184

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VE 375
           Y+R D+   RG FR+ GD I+I+PS++E   +R+  +  D+EEISE   LTGQKIR  +E
Sbjct: 185 YERNDLAFERGKFRIKGDVIDIYPSYME-TGYRLEFWDEDLEEISEINTLTGQKIRKNLE 243

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I IY  + Y+T    +   +  I+++    +   E +G+LLEAQRL+QR  YD+EM+  
Sbjct: 244 RIMIYPATQYLTEDGDIERIIAEIQKDKLEEVKAFEDKGKLLEAQRLKQRTEYDIEMIRE 303

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C+ IENYSRYL+G+ PGE P TL EY P+D + ++DESH++IPQI GMY GD  RK 
Sbjct: 304 IGYCKGIENYSRYLSGKKPGETPDTLLEYFPKDFVTYIDESHISIPQIRGMYNGDRARKE 363

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           +L + GFRL + +DNRPL+FEE+  +   T+ VSATPG +E+++  G I EQ+IRPTG++
Sbjct: 364 SLVDNGFRLKAALDNRPLKFEEFRKITGQTVFVSATPGDFEIQESNGNIAEQLIRPTGIL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +E+R  + QV+D+ +EI +   +  R+L+T LTK+MAE+LTEY     +RV+YMHS+
Sbjct: 424 DPEIEVRPTKNQVDDLMEEIRIRVGKNQRVLVTTLTKKMAEELTEYYLGFGLRVKYMHSD 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + TLERI+II+ LR G+FDVLVGINLLREGLDIPE  LVAIL+ADKEGFLRS+ SL+QTI
Sbjct: 484 IDTLERIDIIKGLRKGEFDVLVGINLLREGLDIPEVSLVAILEADKEGFLRSRRSLVQTI 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV  +VILY D IT S++ AIDET RRR+ Q ++N ++ I+P++V  +I E I  
Sbjct: 544 GRAARNVEGRVILYGDIITDSMKEAIDETNRRRKIQNQYNIENGIDPKTVIREISEDIIN 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +            D +  S SK   +  +  L+K++   +  L+FE+A   RDE+ +LK 
Sbjct: 604 LDYGLPDEVVKEKDKKVFS-SKADIEKEIAKLQKEITKLSKELDFEKAIVKRDEMIKLKK 662


>gi|303233429|ref|ZP_07320098.1| excinuclease ABC, B subunit [Atopobium vaginae PB189-T1-4]
 gi|302480558|gb|EFL43649.1| excinuclease ABC, B subunit [Atopobium vaginae PB189-T1-4]
          Length = 772

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/732 (47%), Positives = 468/732 (63%), Gaps = 64/732 (8%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
           +K    F +++ Y P GDQ +AI +L  G+ + ++ Q LLGVTGSGKTFTMA VI+  Q+
Sbjct: 17  TKAQHPFDIESRYTPRGDQVSAIEKLSYGVTNNKRYQTLLGVTGSGKTFTMANVIQQTQK 76

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++ PNK LAAQ+ SE K  FPHNAV YFVSYYDYYQPEAYVP+TDTYIEK+SSINE+
Sbjct: 77  PTLIIEPNKTLAAQVASEMKELFPHNAVVYFVSYYDYYQPEAYVPQTDTYIEKDSSINEE 136

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++++RH  T SLL R DCIVV+SVSCIYGIGS + Y+ +   +     +E+ + + SL+ 
Sbjct: 137 VEKLRHQTTSSLLSRRDCIVVASVSCIYGIGSPQDYAGLAPNVDKTQPLERDDFIRSLID 196

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY+R D+ ++RGTFRV GD++++FP + E    R+  FG+++E I+E   L G   R  
Sbjct: 197 IQYERNDVDLVRGTFRVRGDAVDVFPPYAE-RPIRIVFFGDEVETIAEIDALNGTIEREF 255

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           + I I+  SHYVT RP + +A+  I++EL+ R+ EL+    L+EAQRL QR +YD+EMLE
Sbjct: 256 DAIPIWPASHYVTARPKITSAIGTIQDELEARVAELKAHNLLVEAQRLSQRTSYDIEMLE 315

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
           T G C  IENYSR+L GR PGEPP TL +Y P D L  +DESHV + Q+  MY GD  RK
Sbjct: 316 TMGFCSGIENYSRHLDGRKPGEPPYTLIDYFPSDMLCIIDESHVALHQLRAMYEGDRSRK 375

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL E+GFRLP  +DNRPLRF+E+    P  I VSATPG +EL   +  +VEQ+IRPTGL
Sbjct: 376 VTLVEHGFRLPCALDNRPLRFDEFEARIPQFIYVSATPGDYELSVSKQ-VVEQVIRPTGL 434

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP V +R +R Q++D+ DEIN    +G R+L+  LTK MA DLTE+  +R  RV YM S
Sbjct: 435 LDPDVCVRPSRGQIDDLADEINTRIAKGERVLVCTLTKHMAADLTEHFLDRGFRVSYMTS 494

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +  TL+RI+IIRDLR G  DVLVGINLLREGLDIPE  LVAILDADKEGFLRS+  LIQT
Sbjct: 495 DTATLDRIDIIRDLRQGNIDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSRRDLIQT 554

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI-------------- 720
           +GRAARN +  VI+YAD IT+S++ AI ET RRR  QL +N++H+I              
Sbjct: 555 MGRAARNAHGTVIMYADRITQSMREAITETRRRRALQLAYNEEHHIVPQTIKKSLTDVAA 614

Query: 721 ----------------------------------NPQSVKE------------KIMEVID 734
                                             NP+                +  + + 
Sbjct: 615 FITDAHNTLDSKSRKDGVFYTEKGAVQDHYYHTSNPKGTMRGQAGAGSGDPGNEAAQQLP 674

Query: 735 PILLEDAATTNISIDAQQ--LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
              L D A + ++  A+    +LS+ +  A + SL  +M  A+  ++FE AAR+RD+I  
Sbjct: 675 AQQLPDGAPSPVASGAELSLAALSQDELAAMIGSLNDEMFEASAAMDFERAARVRDQIVE 734

Query: 793 LKSSPYFQGLDD 804
           L+S       D+
Sbjct: 735 LESLKDGASADE 746


>gi|284044329|ref|YP_003394669.1| excinuclease ABC subunit B [Conexibacter woesei DSM 14684]
 gi|283948550|gb|ADB51294.1| excinuclease ABC, B subunit [Conexibacter woesei DSM 14684]
          Length = 678

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/661 (51%), Positives = 469/661 (70%), Gaps = 6/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P+ DQP+AIA L +GI +R++   LLG TG+GKT TMA  IEA+QRPA+
Sbjct: 1   MPPFRLDSTYAPTADQPSAIASLAEGIEARDRYMTLLGATGTGKTMTMAATIEAVQRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL +EF+ +FP NAVEYFVSYYDYYQPEAYVP  D YIEK+S+IN +I+R
Sbjct: 61  IIAHNKTLAAQLCNEFRTYFPDNAVEYFVSYYDYYQPEAYVPSRDLYIEKDSAINSEIER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+AT SL  R D IVV+SVSCIYG+GS E Y + ++ L+ G +V++ E+L  LV  QY
Sbjct: 121 LRHAATASLFARKDVIVVASVSCIYGLGSPEKYDRNMLILRRGATVDRDEVLRKLVSIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVET 376
            R D  + RG FRV G+++E+FP++ E  A+R ++FG+D+EE+ +F PLTG+ I  ++E 
Sbjct: 181 TRNDTVLQRGNFRVRGETLEVFPAYAES-AYRATLFGDDVEEVQQFDPLTGELIDEDLEF 239

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++  SHY   +  +  A+  I  EL  R  +LE+EG+LLE+ RL QR  YD+EML   
Sbjct: 240 AAVWPASHYNVDQEEIADAVTEIGRELNERCAQLEREGKLLESHRLRQRTQYDMEMLREM 299

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSR L GR  G+ P  L ++ PED + F+DESH T+PQI GM+ GD  RK T
Sbjct: 300 GFCSGIENYSRILDGRRKGDRPFCLIDFFPEDFVCFIDESHQTVPQIGGMFEGDRSRKQT 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRP RFEE+  + P  + VSATPG +E       IVEQI+RPTG++D
Sbjct: 360 LIDYGFRLPSALDNRPQRFEEFLSITPQVVFVSATPGEYERTHSP-RIVEQIVRPTGIID 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +++R  R Q++D+ +EI +  ++  R L+T LTKRM+EDLT YL E   +VRY+HSEV
Sbjct: 419 PKIDVRETRNQIDDLMNEIKVRVERDERTLVTTLTKRMSEDLTGYLLEMGFKVRYLHSEV 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ERI+IIR+LRLG++DVLVG+NLLREGLD+PE  LVAILDADKEGFLR  TSLIQTIG
Sbjct: 479 DTIERIQIIRELRLGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRGATSLIQTIG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNV+  V++YAD  TK++++A++ET RRRE QL +N++H I P+S+ + I ++ + +
Sbjct: 539 RAARNVDGTVVMYADKETKAMRIALEETERRREIQLAYNREHGITPESIIKGISDIAEFL 598

Query: 737 LLEDAATTNISIDAQQLS---LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             E           +  +    +  + +  +  + ++M  AA+ L FE AA +RDEIK L
Sbjct: 599 QAESKVPKGRRRRLKLDAGKQRTPAELEKAIIEIEEEMLRAAEELRFEYAATLRDEIKTL 658

Query: 794 K 794
           +
Sbjct: 659 R 659


>gi|328949674|ref|YP_004367009.1| UvrABC system protein B [Marinithermus hydrothermalis DSM 14884]
 gi|328449998|gb|AEB10899.1| UvrABC system protein B [Marinithermus hydrothermalis DSM 14884]
          Length = 667

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/652 (51%), Positives = 459/652 (70%), Gaps = 9/652 (1%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207
            P GDQP AI  L++G+    +   LLG TG+GKT TMAKVIEAM RPA+V+APNK+LAA
Sbjct: 8   EPKGDQPEAIRALVEGLTDGARFLTLLGATGTGKTVTMAKVIEAMARPALVLAPNKVLAA 67

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           QL +EF+  FP NAVEYF+SYYDYYQPEAYVP  D YIEK+++IN +I+R+RHS TRSLL
Sbjct: 68  QLVAEFRELFPENAVEYFISYYDYYQPEAYVPGRDLYIEKDAAINPEIERLRHSTTRSLL 127

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
            R D IVV+SVS IYG+G+ E Y  M + ++ G +  ++ L+  +V+  Y+R ++ +  G
Sbjct: 128 TRRDVIVVASVSAIYGLGNPEDYRAMHLVVEAGATYPREALIERMVELFYERNEVELQPG 187

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            FR  G+++E++P++ +    R+ ++G++I+ IS  +P+TG++++ +    +Y  +HY T
Sbjct: 188 RFRAKGETLEVWPAY-DTEPVRIELWGDEIDRISVVHPVTGERLKELPGFVLYPATHYAT 246

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
           P   L  A++ I++EL+ RL ELE +G+LLEAQRL++R  YDLEML   G C+ IENY+R
Sbjct: 247 PEARLAPAIRAIEQELEERLKELEAQGKLLEAQRLKERTLYDLEMLRLMGHCKGIENYAR 306

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
           +L+GR PGEPP TL +Y PED L F+DESHV++PQ+ GMY GD+ RK  L EYGFRLPS 
Sbjct: 307 HLSGRAPGEPPYTLLDYFPEDFLTFIDESHVSVPQLRGMYNGDYQRKRILVEYGFRLPSA 366

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +DNRPLRFEE+       + VSATPG +ELE     +VEQIIRPTGL+DP V ++    Q
Sbjct: 367 LDNRPLRFEEFLERTGQIVFVSATPGPFELEHS-DRVVEQIIRPTGLLDPKVTVKPTEGQ 425

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +ED+   +   A +G R+L+TVLTKRMAEDLT YL E  +R RYMH E+   ER  +IRD
Sbjct: 426 IEDLIGAVRERAARGERVLVTVLTKRMAEDLTAYLTEHGVRARYMHHELDAFERQALIRD 485

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LRLG FDVLVGINLLREGLDIPE  LVAILDADK GFLRS+ SLIQTIGRAARN   +V 
Sbjct: 486 LRLGHFDVLVGINLLREGLDIPEVSLVAILDADKTGFLRSERSLIQTIGRAARNAAGEVF 545

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           LYAD I+++++ AI+ET RRR KQ  +NK H I PQ++++ +  ++ P    +A    + 
Sbjct: 546 LYADQISEAMRAAIEETRRRRAKQEAYNKAHGITPQTIRKAVRAIVKPEDFGEAVLEAVG 605

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
            D        +  K  + +L  +M  A++ L+FE AA +RD I+ L++    
Sbjct: 606 ED-------PEDLKEQIAALELEMWRASEALDFERAAELRDRIRALEARLMG 650


>gi|253583761|ref|ZP_04860959.1| excision endonuclease subunit UvrB [Fusobacterium varium ATCC
           27725]
 gi|251834333|gb|EES62896.1| excision endonuclease subunit UvrB [Fusobacterium varium ATCC
           27725]
          Length = 660

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/658 (52%), Positives = 476/658 (72%), Gaps = 5/658 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ + Y P+GDQP AI ++   I++  K Q+LLGVTGSGKTFT+A +IE  QRPA+++
Sbjct: 1   MFKIHSKYSPTGDQPEAIKKITDNINNGVKDQVLLGVTGSGKTFTVANIIEKTQRPALIL 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLYSE+K+FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SSIN++I+++R
Sbjct: 61  APNKTLAAQLYSEYKSFFPDNAVEYFVSYYDYYQPEAYIVTTDTYIEKDSSINDEIEKLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           H+AT +L+ R D I+V+SVS IYG+GS E+Y +M + +     +++KEL+  L+  +Y+R
Sbjct: 121 HAATAALMNRRDVIIVASVSAIYGLGSAETYRKMTIPIDRQTGIDRKELIERLISIRYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIK 378
            DI   RG FR+ GD I+I+PS++E   +R+  +G+D+EEISE   LTGQKIR  +E I 
Sbjct: 181 NDIAFERGKFRIKGDVIDIYPSYME-TGYRLEYWGDDLEEISEINTLTGQKIRKNLERIV 239

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  + Y+T        +  I+++LK+ +   EK G+LLEAQRL+QR  YD+EM+   G 
Sbjct: 240 LYPATQYLTADGDNERILAEIQKDLKIEVEAFEKRGKLLEAQRLKQRTEYDMEMIREIGY 299

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSRYL+G+  GE P TL EY P+D L+F+DESH++IPQI GMY GD  RK  L 
Sbjct: 300 CKGIENYSRYLSGKKEGETPDTLLEYFPKDFLIFIDESHISIPQIRGMYNGDRARKTALV 359

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E GFRL + +DNRPL+FEE+  +   ++ VSATPG +E+E   G I EQ+IRPTG++DP 
Sbjct: 360 ENGFRLKAALDNRPLKFEEFRKIADQSVFVSATPGDFEIEVSHGHIAEQLIRPTGILDPV 419

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+RS + QV+D+ +EI + A +  R+L+T LTK+MAE+LTEY     +RV+YMHS++ T
Sbjct: 420 IEVRSTKNQVDDLLEEIRIRADRKERVLVTTLTKKMAEELTEYYLGFGVRVKYMHSDIDT 479

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LERI+II+ LR G+FD LVGINLLREGLDIPE  LVAIL+ADKEGFLRS+ SL+QTIGRA
Sbjct: 480 LERIDIIKGLRKGEFDALVGINLLREGLDIPEVSLVAILEADKEGFLRSRRSLVQTIGRA 539

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-MEVIDPIL 737
           ARN+  +VILY D +T S++ AIDET RRR+ Q E+N  +NI+P+++ ++I  ++I+   
Sbjct: 540 ARNIEGRVILYGDIMTDSMKQAIDETNRRRKIQNEYNVYNNIDPKTIVKEISEDLINLDY 599

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             D   T           S+K  +  +  L+KQ+   +  L+FE A   RDE+ +LK 
Sbjct: 600 GLDINETEDKAKKTFT--SRKDIEKEIIKLQKQIAKLSKELDFENAIIKRDEMTKLKK 655


>gi|328948864|ref|YP_004366201.1| UvrABC system protein B [Treponema succinifaciens DSM 2489]
 gi|328449188|gb|AEB14904.1| UvrABC system protein B [Treponema succinifaciens DSM 2489]
          Length = 665

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/663 (47%), Positives = 468/663 (70%), Gaps = 5/663 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + + + PSGDQP AI +L +G    +K Q L GVTGSGKTFTMAK+IEA+QRP +
Sbjct: 1   MRKFHVVSPFEPSGDQPNAIKKLSEGFFRGDKYQTLKGVTGSGKTFTMAKIIEAVQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK L+AQLY EFK FFP NAVEYFVSYYDYYQPEAYVP  D YIEK++SIN++ID+
Sbjct: 61  IISHNKTLSAQLYREFKTFFPDNAVEYFVSYYDYYQPEAYVPARDLYIEKDASINKEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R +AT +L+ER D I+V++VSCIYG+G  + Y +M + ++ G+ ++  E+ S L+  QY
Sbjct: 121 LRLAATYALMERRDVIIVATVSCIYGLGMPDLYKEMRIHVEKGNELDTHEIASRLISIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLE-DVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R D+ + RG FR+ GD+IEIFP ++E D A+++ +  + I  I  F  ++G+ I  ++ 
Sbjct: 181 ERNDMILERGKFRIKGDTIEIFPPYMETDEAYKIELDFDQISRIKRFNAISGETIEELDE 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           +++Y   H+V PR  + +  + I+ EL  RL EL   G++LEA+RL+ R TYDLEM++  
Sbjct: 241 LQLYPAKHFVVPRDQMASVTEKIQTELDSRLEELRSAGKILEAERLKTRTTYDLEMMKEM 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS  ++GR  G+PP TL  Y P+D L  +DE+HV++PQI  MY GD  RK  
Sbjct: 301 GYCSGIENYSGPISGRKRGDPPATLLHYFPDDFLCMIDEAHVSVPQIGAMYEGDRARKQN 360

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L ++GFRLPS +DNRPL+ +E+       I V+ATP   E+++    +VEQ+IRPTGL+D
Sbjct: 361 LIDFGFRLPSALDNRPLKIDEFTKKMNQVIFVTATPRPEEIKKSTQ-VVEQLIRPTGLLD 419

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R +  Q++D++ E++   ++G R L+  LTK+MAEDLT+YL E N++V+Y+HSE+
Sbjct: 420 PKIEVRPSEGQMQDIFKEVSARIKKGERSLILTLTKKMAEDLTDYLSELNLKVKYIHSEI 479

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T ER+EI++ LR G+ DVL+GINLLREG+D+PE  L+AILDADK GFLRS TSLIQ IG
Sbjct: 480 DTFERVEILKSLRTGETDVLIGINLLREGIDLPEVSLIAILDADKIGFLRSTTSLIQIIG 539

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN +  V++YAD ++ +++ AIDET RRR  Q  +NK+H I P+++K+ + ++++  
Sbjct: 540 RAARNADGTVLMYADRMSDAMKEAIDETKRRRSIQEAYNKEHGIVPKTIKKAVEDILEHQ 599

Query: 737 LLEDAATTNISIDAQQ---LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             +     NI ++A +        K+ K  L  ++K+M  AAD L++E+AA +RD+I  +
Sbjct: 600 KEDAEQEANIKLEALKNCTNLFVAKQRKKLLDLMKKEMSEAADRLDYEQAAVLRDQIIEI 659

Query: 794 KSS 796
           + +
Sbjct: 660 EKT 662


>gi|162447877|ref|YP_001621009.1| excinuclease ABC subunit B [Acholeplasma laidlawii PG-8A]
 gi|161985984|gb|ABX81633.1| excinuclease ABC subunit B [Acholeplasma laidlawii PG-8A]
          Length = 654

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/657 (49%), Positives = 444/657 (67%), Gaps = 7/657 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++++ Y PSGDQP AI +L+    S  K Q+LLG TG+GKTFT+A +IE M +  +V
Sbjct: 3   ALFKLKSPYKPSGDQPEAIDKLISNFESGTKEQILLGATGTGKTFTIANIIEKMGKKTLV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LA QLY E K+ FP N VEYF+SYYDY+QPEAYV  +DTYIEK+SSIN++ID +
Sbjct: 63  LAHNKTLAGQLYGELKSLFPENRVEYFISYYDYFQPEAYVVSSDTYIEKDSSINDEIDEL 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSA  SLL R D IVV+SVSCIYGIG  + Y +  + L++G+   +  LL+ L++  Y+
Sbjct: 123 RHSAVASLLTREDVIVVASVSCIYGIGDPDDYKKATIFLRVGEEYGRNNLLNKLIELTYE 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RG+FRV GD+IEI  ++      RVS FG++I++I  F PLTG        + 
Sbjct: 183 RNDIDFKRGSFRVRGDAIEIILANEASQGIRVSFFGDEIDDIILFDPLTGVSKERTTFVT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  + ++  +  +  +++ IK EL  ++   +   +LLEAQR+E R  YD+EMLE  G 
Sbjct: 243 IFPATLFMANKDKMKESIRRIKNELADQIHFFQGNNQLLEAQRIEMRTKYDIEMLEEIGF 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
              IENYSR++  R  GE P TL ++  +D L+ +DESHVTIPQ+ GMY GD  RK  L 
Sbjct: 303 TSGIENYSRHIALREAGETPATLIDFFGDDYLMVIDESHVTIPQVRGMYFGDRSRKENLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            +GFRLPS +DNRPL+F+E+   +   I +SATPG +ELE+    IVEQIIRPT L+DP 
Sbjct: 363 NFGFRLPSALDNRPLQFDEFQARQDKVIYLSATPGPYELER-NLPIVEQIIRPTYLLDPE 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           + I+    Q++D+Y EI    ++  R+L+T LT +M+EDLT +  E  ++V Y+HSEVK+
Sbjct: 422 ITIKPTVGQIDDLYFEIKKRIEKNQRVLVTTLTIKMSEDLTRHFKELGLKVAYLHSEVKS 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           LER  I+R LRLGK+DVL+GINLLREGLD+PE GLVAILDADK+GFLRS+ SLIQTIGRA
Sbjct: 482 LERTTILRALRLGKYDVLIGINLLREGLDLPEVGLVAILDADKQGFLRSERSLIQTIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN++  VI+YADTI++S+Q AIDET RRR  Q ++N+ H++ P  V + I + I     
Sbjct: 542 ARNIDGTVIMYADTISESMQKAIDETNRRRSIQTKYNETHHVTPTQVVKDIRDDI----- 596

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                     D   L L KK+ +  LK L   M  AA +L+FE+A  IRD I  LK+
Sbjct: 597 -SIKGVITDKDLDNLKLDKKQKEKELKRLDTLMRQAAKDLDFEKAMEIRDLIFELKA 652


>gi|315926794|gb|EFV06168.1| Excinuclease ABC B subunit [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 657

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/656 (49%), Positives = 439/656 (66%), Gaps = 6/656 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+ 
Sbjct: 3   ELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSH 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R S
Sbjct: 63  NKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR D
Sbjct: 123 ATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y 
Sbjct: 183 NFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILYP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+ 
Sbjct: 243 TSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKG 302

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIP-ED--SLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           +ENY+R+LTG   G+ P TLF+Y   +D   L+ VDESHV++PQ  GM+ GD  RK TL 
Sbjct: 303 VENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL F+E+       + VSATP   ELE  +  I  QI+RPTGL+DP 
Sbjct: 363 DYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLELELSKENIFHQIMRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS++  
Sbjct: 423 IELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDIDA 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GRA
Sbjct: 483 IERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKKHNI P SVK  I E +     
Sbjct: 543 ARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKHNITPTSVKRHIEESLKN--- 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+          +   +   +    +K LRKQM  AA  L FE+AA IRDEI +L+
Sbjct: 600 EEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKLR 655


>gi|296111253|ref|YP_003621635.1| excinuclease ABC subunit B [Leuconostoc kimchii IMSNU 11154]
 gi|295832785|gb|ADG40666.1| excinuclease ABC subunit B [Leuconostoc kimchii IMSNU 11154]
          Length = 627

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/626 (51%), Positives = 453/626 (72%), Gaps = 6/626 (0%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           LG TG+GKTFT++ VI+++++P +V++ NK LA QLYSE K FFP+NAVEYFVSYYDYYQ
Sbjct: 2   LGATGTGKTFTISNVIKSVKKPTLVLSHNKTLAGQLYSELKEFFPNNAVEYFVSYYDYYQ 61

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
           PEAYVP +DT+IEK+S++N++ID++R+SAT SLL RND IVV+SVS I+G+G    Y + 
Sbjct: 62  PEAYVPSSDTFIEKDSAVNDEIDQLRNSATSSLLSRNDVIVVASVSSIFGLGDPHQYQEH 121

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
           ++ L++G+   + +L+  L+  Q+ R DI   RGTFRV GD +EIFP+  +++A RV  F
Sbjct: 122 VINLRVGNEYGRDQLMRDLIDVQFTRNDIDFHRGTFRVRGDVMEIFPASEDEMALRVEFF 181

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
           G++I+ I E   LTG+     + + IY   H++T    + TA+  IK+E+  ++   E E
Sbjct: 182 GDEIDRIREINSLTGETSSERDFVAIYPAKHFMTDDDQMRTALAGIKQEMLAQVALFESE 241

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
           G+L+EAQR++QR  YDL MLE  G    IENYSR++ GR PGEPP TL ++ P+D L+  
Sbjct: 242 GKLIEAQRIKQRTEYDLSMLEEMGFVGGIENYSRWMDGRQPGEPPFTLLDFFPDDFLIVA 301

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
           DESHVT+PQ+ GM+ GD  RK TL  YGFRLPS +DNRPL+  E+       I +SATPG
Sbjct: 302 DESHVTMPQVRGMFNGDKARKETLVNYGFRLPSALDNRPLKLPEFEKHVNQIIYMSATPG 361

Query: 534 SWELEQ-CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
            +ELE+  +  + +QIIRPTGL+DP +E+R    Q++D+  EIN  A +  R+ +T LTK
Sbjct: 362 DYELERVTENHVAQQIIRPTGLLDPEIEVRPVMGQIDDLVGEINQRASKDERVFITTLTK 421

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RMAEDLT+YL    I+V Y+H+++KTLER EIIRDLRLGK+DVL+GINLLREG+D+PE  
Sbjct: 422 RMAEDLTDYLKNVGIKVAYLHADIKTLERTEIIRDLRLGKYDVLIGINLLREGIDVPEVS 481

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           LVAILDADKEGFLR+  SLIQTIGRAARN N  VI+YAD +T+S+Q AIDET RRRE QL
Sbjct: 482 LVAILDADKEGFLRNPRSLIQTIGRAARNANGHVIMYADKVTRSMQSAIDETARRRESQL 541

Query: 713 EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS---LSKKKGKAHLKSLRK 769
           ++N K+ I P ++K++I ++I   +  D+     ++D  Q++   L K + ++ + ++  
Sbjct: 542 QYNSKNGITPTTIKKEIRDLI--SVRTDSTDGQATVDLTQVAFKDLPKDEQQSIIANMES 599

Query: 770 QMHLAADNLNFEEAARIRDEIKRLKS 795
           QM  AA +L+FEEAA++RD +  LK+
Sbjct: 600 QMKAAAKSLDFEEAAQLRDSVMELKA 625


>gi|224418058|ref|ZP_03656064.1| excinuclease ABC subunit B [Helicobacter canadensis MIT 98-5491]
 gi|253827389|ref|ZP_04870274.1| excinuclease ABC subunit B [Helicobacter canadensis MIT 98-5491]
 gi|313141597|ref|ZP_07803790.1| exinuclease abc subunit b [Helicobacter canadensis MIT 98-5491]
 gi|253510795|gb|EES89454.1| excinuclease ABC subunit B [Helicobacter canadensis MIT 98-5491]
 gi|313130628|gb|EFR48245.1| exinuclease abc subunit b [Helicobacter canadensis MIT 98-5491]
          Length = 658

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/661 (50%), Positives = 459/661 (69%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + + Y P+GDQP AI +L   I S  + Q L+GVTGSGKTF+MA +IE +Q P +
Sbjct: 1   MQKFILNSSYKPAGDQPQAIKKLSDFIKSGSQYQTLIGVTGSGKTFSMAHIIEELQMPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M  NK LAAQL+SEFK FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSINE+++R
Sbjct: 61  IMTHNKTLAAQLFSEFKGFFPKNHVEYFISHFDYYQPEAYIPRQDLFIEKDSSINEELER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IVV+SVS  YG+G+ + Y +MI + +IG S  Q+ +L  LV+  Y
Sbjct: 121 LRLSATTSLLAYDDTIVVASVSANYGLGNPKEYLEMIEKFEIGSSYNQRNILLRLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR D    RG FRV G+ I+I+P++ ED A R+  FG+++E+I     +  + ++++E+ 
Sbjct: 181 KRNDSFFDRGDFRVNGEVIDIYPAYSEDEAVRLEFFGDELEKIVILDSVDKKPLKSLESF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA + ++     L  A+K I++EL  RL   +KE +++E +RL+ R  +DLEM+E+TG
Sbjct: 241 VLYAANPFIVGADRLKVAIKNIEKELAERLNFFKKENKMVEYERLKSRTEFDLEMIESTG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+LTG+ PGE P +L +Y     +  LL VDESHV++PQ  GMY GD  RK
Sbjct: 301 ICKGIENYARHLTGKAPGETPYSLLDYFAQKNKPYLLIVDESHVSLPQFGGMYAGDRSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L EYGFRLPS +DNRPL++EE+    P  + VSATP   ELE       EQ+IRPTGL
Sbjct: 361 EVLVEYGFRLPSALDNRPLKYEEFIHKAPHFLFVSATPAQKELELSGNHTAEQLIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+ S   QVE +YDE      +G R+L+T LTK+MAE+LT Y  +  ++VRYMHS
Sbjct: 421 LDPLYEVLSVENQVEVLYDEAKKVIARGERVLVTALTKKMAEELTRYYNDLGLKVRYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER +IIR LR+G+FD+LVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNQIIRGLRVGEFDILVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KV+L+AD IT S++ A++ T  RR KQ   NK HNI PQSV  K+ E + 
Sbjct: 541 MGRAARNVNGKVLLFADKITPSLKKAMEVTDYRRSKQEAFNKAHNIKPQSVSRKLDENLK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              L            ++  + +++ +  +K L K+MH AA  L+FEEAAR+RDEI +++
Sbjct: 601 NQDL----GMLYEKAKKKEKMPRQEREKLVKELTKKMHEAAKRLDFEEAARLRDEIIKMR 656

Query: 795 S 795
           +
Sbjct: 657 N 657


>gi|300871666|ref|YP_003786539.1| excinuclease ABC subunit B [Brachyspira pilosicoli 95/1000]
 gi|300689367|gb|ADK32038.1| excinuclease ABC, B subunit [Brachyspira pilosicoli 95/1000]
          Length = 679

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/662 (50%), Positives = 465/662 (70%), Gaps = 6/662 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++++++ PSGDQ  AI  L+KG+ ++ K Q LLGVT SGKTFT+A VIE   RP +
Sbjct: 1   MKSFKIESNFKPSGDQITAIDSLVKGLENKNKYQTLLGVTASGKTFTIANVIEKANRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           VM+ NK LAAQLY E K+FFP+NAVEYFVSYYDYYQPEAYVP  D YI+K++S+N++IDR
Sbjct: 61  VMSHNKTLAAQLYRELKDFFPNNAVEYFVSYYDYYQPEAYVPAKDLYIDKDASVNDEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R  AT SLLER D I+V+SVSCIYG+GS E Y ++ + ++     ++ E++  LV  QY
Sbjct: 121 LRLKATTSLLERRDVIIVASVSCIYGLGSPEDYRKLYIAIEKDGEYDRDEIIEKLVSIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R    + R  F+V GD++EI  ++ ++V  RV  FG+ +E I +  P+T QKI   + +
Sbjct: 181 ERVKDVLERARFKVMGDTLEIMSAYSDEV-IRVEFFGDTVERIIKINPITRQKIAEQDRV 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+VT    L   +K I+EEL+ +  + + EG+L+EA+R+  R  YDLEML   G
Sbjct: 240 VIYPAKHFVTGGDKLAAGIKLIEEELEEQYNKFKSEGKLVEAERIYGRTKYDLEMLREVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR L+GR  G+ P  L +Y P+D L  +DESHV++PQI GM+ GD  RK TL
Sbjct: 300 YCAGIENYSRPLSGRKEGDRPACLIDYFPKDFLTIIDESHVSVPQIRGMFFGDRSRKETL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL FEE+  L   TI +SATP  +EL++    +VEQIIRPTGL+DP
Sbjct: 360 VKYGFRLPSALDNRPLFFEEFESLTNDTIYISATPAEYELKKS-SQVVEQIIRPTGLLDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+     Q++ + +EI        RI +T LTK+MAEDLT+YL E  +R RY+HS+++
Sbjct: 419 IIEVYPINGQIDRILEEIKKTVSNNERIFITTLTKKMAEDLTKYLNENGVRTRYLHSDIQ 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  L+ ILDADK GFLR+ T+LIQTIGR
Sbjct: 479 TVERVEIIRDLRLGAFDVLVGINLLREGLDVPEVSLILILDADKTGFLRNTTTLIQTIGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N +VI++ADTI+ ++++AI+ET RRR+ Q+++NK+HNI P+++ +KI ++I+   
Sbjct: 539 AARNANGRVIMFADTISDAMKVAIEETERRRKIQMDYNKEHNITPKTIIKKIQDIIEREE 598

Query: 738 LEDAATT----NISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
             + +          + +     ++K   ++K L K+M  A+D+L FE+A  IR++I +L
Sbjct: 599 KVETSYELHFDFRRFNERVKIDPEQKSDDYIKELEKEMKKASDSLEFEKAIEIREKINQL 658

Query: 794 KS 795
           K 
Sbjct: 659 KQ 660


>gi|15639110|ref|NP_218556.1| excinuclease ABC subunit B [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025350|ref|YP_001933122.1| excinuclease ABC subunit B [Treponema pallidum subsp. pallidum
           SS14]
 gi|6136157|sp|O83154|UVRB_TREPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238689314|sp|B2S264|UVRB_TREPS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|3322379|gb|AAC65106.1| excinuclease ABC, subunit B (uvrB) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189017925|gb|ACD70543.1| excinuclease ABC, subunit B [Treponema pallidum subsp. pallidum
           SS14]
          Length = 668

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/670 (47%), Positives = 445/670 (66%), Gaps = 7/670 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++   + P+GDQ AAI  L++G+H+  + Q L GVTGSGKTFT+A VI  +Q+P +
Sbjct: 1   MKEFKLHASFQPAGDQIAAIDALVRGLHAGARFQTLKGVTGSGKTFTVANVIARVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK L+AQLY EFK FFP NAVEYFVSYYDYYQPE+YVP  D YIEK++SIN +I+R
Sbjct: 61  VISHNKTLSAQLYREFKGFFPDNAVEYFVSYYDYYQPESYVPARDLYIEKDASINAEINR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT SL+ER D IVV++VSCIYG+G  ES+  + + +++   ++ ++L   LV  QY
Sbjct: 121 MRLSATFSLMERRDVIVVATVSCIYGLGLPESWRDLRIHVEVNQCLDLEDLKRQLVSLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D  +  G FRV GD IEIFP++LE+  +R+    + +  I   +P++G  +R  E +
Sbjct: 181 ERNDAVLECGRFRVRGDVIEIFPAYLEEF-YRIECDWDRVVRIRRIHPVSGAVLREFEEL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+V     +  AM  I++EL  RL++L +E +L EA RL+ R  YDLEML   G
Sbjct: 240 TVYPAKHFVLKEDAIPRAMDRIRQELDERLVQLTQENKLAEAARLKTRTEYDLEMLGEMG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYS  + GR  GEPP TL  Y P+D +LFVDESHVT+PQ+  MY GD  RK  L
Sbjct: 300 YCHGIENYSAPIAGRKSGEPPVTLLHYFPKDFVLFVDESHVTLPQLGAMYEGDRVRKQNL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLP   DNRPL+  E+  L    + +SATPG  E  Q    IVEQ+IRPTGL+DP
Sbjct: 360 IDFGFRLPCARDNRPLKDSEFEALLNQAVFISATPGVKERTQS-VQIVEQLIRPTGLLDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    Q+ED+   +   + +  R L+  LTK+MAEDLT+Y     IR +Y+HSE++
Sbjct: 419 CIEVRKTDGQIEDICQRVKACSARNERSLVLTLTKKMAEDLTDYFNGLGIRTKYVHSEIE 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EI+  LR G+ +VLVGINLLREG+D+PE   +AILDA+  GFLRS TSLIQ IGR
Sbjct: 479 TIERVEILTSLRAGECEVLVGINLLREGIDLPEVAFIAILDANIVGFLRSTTSLIQIIGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--DP 735
           AARN    V++YAD I+ +++ AI+ET RRR+ Q+ +N+ H I P+++K+ I +++  + 
Sbjct: 539 AARNARGTVVMYADAISDAMREAIEETARRRKIQMAYNRAHGITPRTIKKSIEDILVREQ 598

Query: 736 ILLEDAATTNISI---DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            + +DAA   ++     A     +    K  +++LR  M + A  L FEEAA IRD+I +
Sbjct: 599 EVKKDAARVQVAPLLRAADADVRTHAARKKMVQALRLHMKVCARELRFEEAALIRDKILQ 658

Query: 793 LKSSPYFQGL 802
           L+      G+
Sbjct: 659 LQRQDEQNGV 668


>gi|307637782|gb|ADN80232.1| Excinuclease ABC subunitB [Helicobacter pylori 908]
          Length = 658

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/661 (48%), Positives = 452/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA VI    +P +
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANVIAQTNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  Q  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI     +G R+L+T LTK+MAE+L +Y  E  ++VRYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKSVVARGERVLITTLTKKMAEELCKYYAEWGLKVRYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FDVL+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKIHNITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|325997968|gb|ADZ50176.1| Excinuclease ABC subunit B [Helicobacter pylori 2017]
          Length = 658

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/661 (48%), Positives = 452/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA VI    +P +
Sbjct: 1   MPLFDLKSPYPPAGDQPKAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANVIAQTNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  Q  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI     +G R+L+T LTK+MAE+L +Y  E  ++VRYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKSVVARGERVLITTLTKKMAEELCKYYAEWGLKVRYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FDVL+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKIHNITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|317052706|ref|YP_004113822.1| excinuclease ABC subunit B [Desulfurispirillum indicum S5]
 gi|316947790|gb|ADU67266.1| excinuclease ABC, B subunit [Desulfurispirillum indicum S5]
          Length = 660

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/655 (53%), Positives = 470/655 (71%), Gaps = 1/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+G QP AI ++ + I    K Q+LLGVTGSGKT+TMAK++EA+Q+P +V+A
Sbjct: 3   FRVVSPYSPAGSQPQAIEKITRHITEGTKHQVLLGVTGSGKTYTMAKIVEAVQKPTLVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYFVSYYDYYQPEAY+P TDT+IEK+SSIN++IDR+RH
Sbjct: 63  HNKTLAAQLYQEFKEFFPDNAVEYFVSYYDYYQPEAYIPTTDTFIEKDSSINDKIDRLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++V+SVSCIYG+GS E Y  M++ + +   V+ +EL   LV+ QY R 
Sbjct: 123 SATRSILERRDVLIVASVSCIYGLGSAEFYLDMVIPVDVDSEVDMEELAGELVRVQYTRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFR  GD IEIFPS+  D A R+  FG+ +E I E  PLTG+K R++E ++IY
Sbjct: 183 DTDFRRGTFRRRGDIIEIFPSYEIDSAIRIEFFGDTVEAIWEIDPLTGEKRRSIEKLRIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHYV  +  +  A+  IK +LK RL     E +LLEAQR+EQR  +D+EMLE  G CQ
Sbjct: 243 PNSHYVADKSIIERAIGSIKADLKKRLDYFRSENKLLEAQRIEQRTNFDIEMLEEFGFCQ 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+ GR+ GEPP TL  Y+P+D+L+F+DESHVTIPQ+ GMY GD  RK TL +Y
Sbjct: 303 GIENYSRYVDGRSEGEPPHTLLSYMPDDALIFIDESHVTIPQVRGMYNGDRSRKMTLVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+ +DNRPL FEE+N + P  + VSATP  +E E     I E IIRPTGL+DP +E
Sbjct: 363 GFRLPAALDNRPLNFEEFNSILPQAVYVSATPAEYEKELSGHTITELIIRPTGLLDPEIE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +  QV+++  E+     +G + L+T LT R++E+L++YL +  I+V+Y+HS++ T+E
Sbjct: 423 VRPSTGQVDNLVFELKKVIAEGGKALVTTLTIRLSENLSDYLIQLGIKVKYLHSKIDTIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EIIRDLRLG +DV+VGINLLREGLDIPE  LVAILDADKEGFLRS+ SL+QT GRAAR
Sbjct: 483 RSEIIRDLRLGVYDVVVGINLLREGLDIPEVQLVAILDADKEGFLRSERSLMQTAGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N+  +VI+Y D +T+S+Q  ID T +RR  Q  +N++H I PQ + + I + + P L E+
Sbjct: 543 NLKGRVIMYGDKVTQSMQSVIDTTAKRRAIQQAYNEEHGITPQGISKAIGKDLIPELAEE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                +        L+  + +  +  L+ +M   A+ L+FE AA +RDEI RL+ 
Sbjct: 603 RQE-RLQGKVDIGQLADYQIREKIVELQAKMQRHAEELDFESAASVRDEIFRLQK 656


>gi|148926649|ref|ZP_01810330.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845168|gb|EDK22263.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 657

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/656 (49%), Positives = 439/656 (66%), Gaps = 6/656 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+ 
Sbjct: 3   ELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMSH 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R S
Sbjct: 63  NKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR D
Sbjct: 123 ATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y 
Sbjct: 183 NFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILYP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+ 
Sbjct: 243 TSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKG 302

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIP-ED--SLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           IENY+R+LTG   G+ P TLF+Y   +D   L+ VDESHV++PQ  GM+ GD  RK TL 
Sbjct: 303 IENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL F+E+       + VSATP   ELE  +  I  QI+RPTGL+DP 
Sbjct: 363 DYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLELELSKENIFHQIMRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS++  
Sbjct: 423 IELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDIDA 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GRA
Sbjct: 483 IERNEIIRGLRSGAFDILIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E +     
Sbjct: 543 ARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKN--- 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+          +   +   +    +K LRKQM  AA  L FE+AA IRDEI +L+
Sbjct: 600 EEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKLR 655


>gi|315655348|ref|ZP_07908248.1| excision endonuclease subunit UvrB [Mobiluncus curtisii ATCC 51333]
 gi|315490288|gb|EFU79913.1| excision endonuclease subunit UvrB [Mobiluncus curtisii ATCC 51333]
          Length = 723

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/710 (49%), Positives = 469/710 (66%), Gaps = 45/710 (6%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
             +  ++    ++ ++Y PSGDQP AIA+L + I+S EK  +LLG TG+GKT T A +IE
Sbjct: 8   PRDLVENPIPLEVVSEYTPSGDQPEAIAELAERINSGEKDVVLLGATGTGKTATTAWLIE 67

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +QRP +V+ PNK LAAQL +EF+   PHNAVEYFVSYYDYYQPEAYVP+TDTYIEK+S+
Sbjct: 68  KLQRPTLVLEPNKTLAAQLTAEFRELLPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSA 127

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN++++R+RHSAT SLL R D +VVSSVSCIYG+G+ E Y    + L  G  +E++ L+ 
Sbjct: 128 INDEVERLRHSATNSLLTRRDVVVVSSVSCIYGLGTPEEYVSRGIHLTRGMQIERQHLIK 187

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V+ QY R D+   RG FRV GD+I+I P + E++  RV MFG++I+ ++  +P+TG  
Sbjct: 188 RFVQMQYNRNDVEFTRGNFRVRGDTIDIIPMY-EELGVRVEMFGDEIDALALLHPVTGAT 246

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +  V  I ++  SHYV     +  A+  I+ EL+ R      +G+LLE QRL  R TYDL
Sbjct: 247 LHEVNEIYVFPASHYVAGPERMERALAGIESELEERCKWFHDQGKLLEEQRLRMRTTYDL 306

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML   G C  IENYS ++ GR PGEPP TL +Y PED LL +DESHVT+PQI GM+ GD
Sbjct: 307 EMLRQIGMCAGIENYSLHIDGRQPGEPPHTLLDYFPEDFLLVIDESHVTVPQIGGMFEGD 366

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS MDNRPL++EE+      T+ +SATPG +EL    G +VEQIIR
Sbjct: 367 MSRKRTLVDFGFRLPSAMDNRPLKWEEFQDRIGQTVYLSATPGDYELGLSDG-VVEQIIR 425

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++    QV+D+ ++I L  +   R+L+T LTKRMAEDLT YL +R IRV 
Sbjct: 426 PTGLVDPKIVVKPVEGQVDDLMEQIRLRTEADERVLVTTLTKRMAEDLTTYLAQRGIRVE 485

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R LR G+FDVLVGINLLREGLD+PE  LV+ILDADK+GFLRS  S
Sbjct: 486 YLHSDVDTLRRVELLRSLRQGEFDVLVGINLLREGLDLPEVSLVSILDADKQGFLRSTKS 545

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD ++ +++ AI+ET RRR KQ+ +N+ H I+PQ +++KI 
Sbjct: 546 LIQTIGRAARNVHGEVHMYADAVSDAMRDAIEETERRRHKQIAYNEAHGIDPQPLRKKIS 605

Query: 731 EVIDPILLEDAATTNI------------------------------------SIDAQQLS 754
           +V D +  ED  T  +                                     ++A +  
Sbjct: 606 DVTDMLAREDIDTAELLGTGYRQPDQKPSAAVRSAAQDTAAARAALEVINRARVNATEDQ 665

Query: 755 LSKK-------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            S+           + +  L  QMH AA  L FE AAR+RDEI  LK   
Sbjct: 666 PSQAGADENTVDLPSLVAELTNQMHTAASELRFELAARLRDEIADLKKEI 715


>gi|315636043|ref|ZP_07891302.1| excision endonuclease subunit UvrB [Arcobacter butzleri JV22]
 gi|315479699|gb|EFU70373.1| excision endonuclease subunit UvrB [Arcobacter butzleri JV22]
          Length = 657

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/660 (52%), Positives = 464/660 (70%), Gaps = 8/660 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +DY PSGDQP AI  L   I +  +   LLGVTGSGKT+T+AKVIE +Q+P +
Sbjct: 1   MAKFKVVSDYEPSGDQPKAIEALSSSIKAGNQYNTLLGVTGSGKTYTIAKVIEKVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M  NK LAAQLYSEFK FFP+N VEYF+SYYDYYQPEAY+PR+D +IEK+SSIN++++R
Sbjct: 61  IMTHNKTLAAQLYSEFKQFFPNNHVEYFISYYDYYQPEAYIPRSDLFIEKDSSINDELER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+   Y  M+ ++++G +  QKE L  L++  Y
Sbjct: 121 LRLSATASLLSFDDVIVIASVSANYGLGNPSEYKAMVQRVEVGFNYSQKEFLLKLIEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR D    R  FRV GD I+IFP++ ED   RV  FG+++E I++   +T  K +++  +
Sbjct: 181 KRNDKFFDRADFRVNGDVIDIFPAYFEDEFIRVEFFGDEVESITKHEYITNTKTKDLNEV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY+ + +V  +  L  A+K I+EEL+ RL   +KE +L+E QRL+QR+ +DLEM+E TG
Sbjct: 241 IIYSVNPFVVTQENLGRAVKEIEEELEQRLDFFQKEQKLVEYQRLKQRVEFDLEMIEGTG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+LTG+  GE P +L +Y     ED LL VDESHV++PQ  GM+  D  RK
Sbjct: 301 MCKGIENYARHLTGQKAGETPYSLLDYFEQMDEDFLLVVDESHVSLPQFRGMHAADRSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L EYGFRLPS +DNRPL+F+E+    P  + VSATP   ELE    ++ EQIIRPTGL
Sbjct: 361 EVLVEYGFRLPSALDNRPLKFDEFIKKAPHYVFVSATPNELELEMS-SVVAEQIIRPTGL 419

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP ++I  +  QVE ++DEI     +  R+L+TVLTK+MAE+L  Y  +  I+V+YMHS
Sbjct: 420 LDPIIDIIDSEFQVEKLHDEIKKVIAKNERVLVTVLTKKMAEELASYYADLGIKVKYMHS 479

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER +IIR+LRLG FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQT
Sbjct: 480 EIDAIERNQIIRELRLGTFDVLIGINLLREGLDIPETSLVAILDADKEGFLRSRTSLIQT 539

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN N +VIL+A  +T S+Q AIDET RRR+ Q E NK+HNI P+S K K+ E + 
Sbjct: 540 IGRAARNENGRVILFAKKVTDSMQFAIDETNRRRKLQEEFNKEHNITPKSTKRKLDENLK 599

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               +D A     ++     +   + K  L  L KQM  AA +LNFEEA R+RDEI ++K
Sbjct: 600 LEEYDDVAWKKQKLE----KMPASERKKILIELNKQMKKAASDLNFEEAIRLRDEIAKIK 655


>gi|296327642|ref|ZP_06870185.1| excision endonuclease subunit UvrB [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296155232|gb|EFG96006.1| excision endonuclease subunit UvrB [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 669

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/658 (51%), Positives = 477/658 (72%), Gaps = 4/658 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
            + +   F++ +DY P+GDQP AI  ++K I +  K Q+LLGVTGSGKTFT+A VIE +Q
Sbjct: 5   KTMENNLFKIHSDYKPTGDQPTAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQ 64

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RP++++APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N+
Sbjct: 65  RPSLIIAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVND 124

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +ID++R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     + +KEL+  L+
Sbjct: 125 EIDKLRNAATAALIHRRDVIIVASVSSIYGLGSPDTYRRMTIPIDKQTGISRKELMKRLI 184

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             +Y R D+   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQK++ 
Sbjct: 185 ALRYDRNDVAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKK 243

Query: 374 -VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            +E I IY  + Y+T     +  ++ IK++LK+ + + E + +LLEAQRL QR  YDLEM
Sbjct: 244 NLERIVIYPATQYLTADDDKDRIIQEIKDDLKVEVKKFEDDKKLLEAQRLRQRTEYDLEM 303

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           +   G C+ IENYSRYL+G+ PGE P TLFEY P+D LLF+DESH+T+PQ+ GMY GD  
Sbjct: 304 ITEIGYCKGIENYSRYLSGKKPGETPDTLFEYFPKDFLLFIDESHITVPQVRGMYNGDRA 363

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK +L E GFRL + +DNRPLRFEE+      T+ +SATPG +E+E     I EQ+IRPT
Sbjct: 364 RKESLVENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNHIAEQLIRPT 423

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           G+VDP +EIR  + QV+D+ DEI     +  R+L+T LTK++AE+LTEY  E  ++V+YM
Sbjct: 424 GIVDPEIEIRPTKNQVDDLLDEIRKRVAKKERVLVTTLTKKIAEELTEYYIELGVKVKYM 483

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++ TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+
Sbjct: 484 HSDIDTLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLV 543

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGRAARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  H+I+P+S+ ++I E 
Sbjct: 544 QTIGRAARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYHHIDPKSIVKEIAE- 602

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            D I L+         + +++  +K   +  +  L K++    + L+FE+A  +RDE+
Sbjct: 603 -DLINLDYGIEEKKFENNKKVFRNKADIEKEITKLEKKIKKLVEELDFEQAIVLRDEM 659


>gi|317014499|gb|ADU81935.1| excinuclease ABC subunit B [Helicobacter pylori Gambia94/24]
          Length = 658

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/661 (48%), Positives = 452/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA+
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRAMGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQNKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  +  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKENVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI     +G R+L+T LTK+MAE+L +Y  E  ++VRYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKSVVARGERVLITTLTKKMAEELCKYYAEWGLKVRYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FDVL+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA   T+S+Q A + T+ RR KQ E NK HNI P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKTTQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|260497929|ref|ZP_05816047.1| excinuclease ABC, B subunit [Fusobacterium sp. 3_1_33]
 gi|260196544|gb|EEW94073.1| excinuclease ABC, B subunit [Fusobacterium sp. 3_1_33]
          Length = 663

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/655 (52%), Positives = 479/655 (73%), Gaps = 4/655 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F++ ++Y P+GDQP AI  ++K I +  K Q+LLGVTGSGKTFT+A VIE +QRP+
Sbjct: 2   ENNLFKIHSEYRPTGDQPTAINSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPS 61

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID
Sbjct: 62  LIIAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEID 121

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     + +KEL+  LV  +
Sbjct: 122 KLRNAATAALIHRRDVIIVASVSSIYGLGSPDTYRKMTIPIDKQTGISRKELIKRLVDLR 181

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VE 375
           Y R D+   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQK++  +E
Sbjct: 182 YNRNDVAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLE 240

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I IY  + Y+T     +  +K IK++LK+ + + E E +LLEAQRL+QR  YDLEM+  
Sbjct: 241 RIVIYPATQYLTADDDKDRIIKEIKDDLKVEVKKFEDEKKLLEAQRLKQRTEYDLEMITE 300

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C+ IENYSRYL G+NPGE P TLFEY P+D LLF+DESH+T+PQI GMY GD  RK 
Sbjct: 301 IGYCKGIENYSRYLAGKNPGETPDTLFEYFPKDFLLFIDESHITVPQIRGMYNGDRARKE 360

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           +L E GFRL + +DNRPLRFEE+      T+ +SATPG +ELE     I EQ+IRPTG+V
Sbjct: 361 SLVENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFELEVSDNHIAEQLIRPTGIV 420

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR  + QV+D+ DEI   A +  R+L+T LTK++AE+LTEY  E  ++V+YMHS+
Sbjct: 421 DPEIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSD 480

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTI
Sbjct: 481 IDTLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTI 540

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  ++I+P+S+ ++I E  D 
Sbjct: 541 GRAARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYNHIDPKSIVKEIAE--DL 598

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           I L+         +++++  +K   +  +  L K++    + L+FE+A  +RDE+
Sbjct: 599 INLDYGIEEKKFENSKKVFRNKADIEKEITKLEKKIKKLVEELDFEQAIVLRDEM 653


>gi|330508505|ref|YP_004384933.1| excinuclease ABC subunit B [Methanosaeta concilii GP-6]
 gi|328929313|gb|AEB69115.1| excinuclease ABC, B subunit [Methanosaeta concilii GP-6]
          Length = 658

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/668 (50%), Positives = 448/668 (67%), Gaps = 19/668 (2%)

Query: 130 SINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI 189
           S++ H      F++ + + P G QP AI QL+ G+   E+ Q L+GVTGSGKT+T+A VI
Sbjct: 7   SLSQHRPVEQQFRLHSSFAPCGSQPEAIDQLVLGLQRNERFQTLIGVTGSGKTYTVANVI 66

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
             +Q+P +V+  NK LA QLY+EFK FFP N VEYF+SYYDYYQPE+Y+P  D YIEK+S
Sbjct: 67  SQVQKPTLVIVHNKTLAEQLYNEFKEFFPDNRVEYFISYYDYYQPESYIPSKDQYIEKDS 126

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELL 309
            IN +I++MR + T SLL R D IVV+SVSCIYG+G+ E++  M  +LK+ + + +K++L
Sbjct: 127 LINPKIEQMRLATTASLLSRRDVIVVASVSCIYGLGNPENFQSMGFELKVNERISRKDIL 186

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369
             LV   Y+R D+ +  G FRV G++I+I P +  ++  R+ +FGN +E ISE   +TG+
Sbjct: 187 ERLVDILYERSDLDLSPGRFRVNGETIDIIPGYFNNI-IRIELFGNKVERISEVDRITGK 245

Query: 370 KIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD 429
           ++ ++    +Y   HYV P   L  A+  IK EL  RL EL     ++EA RL QR  +D
Sbjct: 246 RVEDMSYFFVYPARHYVIPENELKAAVDSIKAELNERLQELG----MIEAHRLRQRTMHD 301

Query: 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG 489
           +EM+E TGSC+ IENYSR+   R PGEPP  L +Y P+D LL +DESH T+PQ+  M RG
Sbjct: 302 MEMIEETGSCKGIENYSRHFDRRQPGEPPYCLIDYFPDDFLLIIDESHQTLPQLRAMNRG 361

Query: 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
           D  RK  L +YGFRLPS  DNRPL FEE+       I VSATPG +ELE  +   VEQII
Sbjct: 362 DRSRKKNLVDYGFRLPSSYDNRPLDFEEFERFMRNVIFVSATPGDYELEHSKSP-VEQII 420

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           RPTGL+DP VE+R    QV+DV  EI+    +G R L+T LTKR+AE+LT+YL + +IR 
Sbjct: 421 RPTGLLDPEVEVRPIDGQVKDVMTEISGVISRGDRALVTTLTKRLAEELTDYLSQNDIRA 480

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           RY+HSE++ LER EIIR+LRLGKFDVLVGINLLREGLDIPE G + ILDADKEGFLR + 
Sbjct: 481 RYLHSEIQPLERTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDEK 540

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           SLIQTIGRA+RN NS+V+LYAD +T SI+ A++ T RRR  Q+ +N++H I PQ++K+ I
Sbjct: 541 SLIQTIGRASRNANSRVVLYADRMTGSIKKAMETTERRRSLQMAYNQEHGIIPQTIKKPI 600

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            E              +        + K      +  L  +M  AA+ L FE A ++RD 
Sbjct: 601 RE-------------KVVEITDTRHIPKSDIPNAIIELEAEMMAAAERLEFERAIQLRDT 647

Query: 790 IKRLKSSP 797
           ++RL+   
Sbjct: 648 VRRLEREM 655


>gi|57167692|ref|ZP_00366832.1| excinuclease ABC, B subunit [Campylobacter coli RM2228]
 gi|305433199|ref|ZP_07402355.1| excision endonuclease subunit UvrB [Campylobacter coli JV20]
 gi|57020814|gb|EAL57478.1| excinuclease ABC, B subunit [Campylobacter coli RM2228]
 gi|304443900|gb|EFM36557.1| excision endonuclease subunit UvrB [Campylobacter coli JV20]
          Length = 657

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/656 (49%), Positives = 435/656 (66%), Gaps = 6/656 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +D+ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+ 
Sbjct: 3   ELTSDFKPSPDQEQAIQGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMSH 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R S
Sbjct: 63  NKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT SLL   D + ++SVS  YG+G+   Y  M++  ++   + QKELL  LV   YKR D
Sbjct: 123 ATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELDMQISQKELLKKLVDMGYKRND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y 
Sbjct: 183 NFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILYP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+ 
Sbjct: 243 TSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKG 302

Query: 442 IENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL 
Sbjct: 303 VENYARHLTGLKEGDTPYTLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL F+E+       + +SATP   ELE  +  I  QI+RPTGL+DP 
Sbjct: 363 DYGFRLPSALDNRPLMFDEFIHKDCQFLFISATPAPLELELSKENIFHQIMRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS++  
Sbjct: 423 IELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDIDA 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GRA
Sbjct: 483 IERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KV+L+   ITKS+Q A+D T  RR+ Q  +N+KHNI P SVK  I E +     
Sbjct: 543 ARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQEAYNQKHNITPTSVKRHIEESLKN--- 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+          +   +   +    +K LRKQM  AA  L FE+AA +RDEI +LK
Sbjct: 600 EENLGEIYRKGKKFEKMPANERAKIVKELRKQMLEAAKALEFEKAATLRDEINKLK 655


>gi|110669574|ref|YP_659385.1| excinuclease ABC subunit B [Haloquadratum walsbyi DSM 16790]
 gi|109627321|emb|CAJ53811.1| excinuclease ABC chain B [Haloquadratum walsbyi DSM 16790]
          Length = 700

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/673 (49%), Positives = 460/673 (68%), Gaps = 8/673 (1%)

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
             S +  + D   F++   + P+GDQP AI  L  G  +    Q LLGVTGSGKT T++ 
Sbjct: 9   PLSPDRPAVD-RDFRVDAPFDPAGDQPDAINSLASGFDAGMTEQTLLGVTGSGKTNTVSW 67

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           V+E +QRP +V+A NK LAAQLY EF+  FP NAVEYFVSYYDYYQPEAYV +TDTYI+K
Sbjct: 68  VVEEIQRPTLVIAHNKTLAAQLYEEFRELFPDNAVEYFVSYYDYYQPEAYVEQTDTYIDK 127

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           + SINE+IDR+RHSATRSLL R+D IVV+SVS IYG+G   +Y+ M ++ ++G  + + E
Sbjct: 128 DLSINEEIDRLRHSATRSLLTRDDVIVVASVSAIYGLGDPANYTDMALRFEVGSQINRDE 187

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           LL+ LV   Y+R D+   +GTFRV GD++E++P +    A R+  +G++I+ +S+  PLT
Sbjct: 188 LLAQLVDLNYERNDVDFQQGTFRVRGDTVEVYPMYG-RYAVRIEFWGDEIDRLSKLDPLT 246

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           G  +     + ++   HY  P   L +A+  I+  +  R+   E++G L+ AQR+E+R T
Sbjct: 247 GNVVSEEPAVLVHPAEHYSIPEAKLESAIDEIETLMTDRIQYFERQGDLVAAQRIEERTT 306

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           +D+EML  TG C  IENYS +++ R+ G+PP TL +Y P+D L  VDESH T+PQI G +
Sbjct: 307 FDIEMLRETGYCSGIENYSVHMSDRDSGDPPHTLLDYFPDDFLTVVDESHQTLPQIRGQF 366

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
            GD  RK +L + GFRLP+  DNRPL FEE+     T + VSATPG++E E  +  +VEQ
Sbjct: 367 AGDKSRKDSLVKNGFRLPTAYDNRPLTFEEFQKKTGTRLYVSATPGTYEREHSEQ-VVEQ 425

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           I+RPT L+DP +E+  A  QV+D+ + IN   ++  R+L+T LTKRM+EDLTE+L E  +
Sbjct: 426 IVRPTHLIDPAIEVADATGQVDDLLNRINKRVERDERVLVTTLTKRMSEDLTEFLEEAGV 485

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            V YMH E  TLER E+IRDLRLG  DVLVGINLLREGLDIPE  LVAILDAD+EGFLRS
Sbjct: 486 DVAYMHDETDTLERHELIRDLRLGTIDVLVGINLLREGLDIPEVSLVAILDADQEGFLRS 545

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           +T+L+QT+GRAARNV  +VILYAD IT S+  AIDET RRR+ Q ++N++H  +PQ++++
Sbjct: 546 ETTLVQTMGRAARNVEGEVILYADEITDSMSAAIDETRRRRQIQRKYNEEHGYDPQTIQK 605

Query: 728 KIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
            I E   P   +D+ T        +  + K++ +  +++L ++M  A  +L FE AA IR
Sbjct: 606 AIGETNLPGSDDDSTT-----RTTETPVDKQEARIQIETLEERMESAVSDLEFELAADIR 660

Query: 788 DEIKRLKSSPYFQ 800
           D+I+ ++      
Sbjct: 661 DQIRDIQREFGLD 673


>gi|283953964|ref|ZP_06371493.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni 414]
 gi|283794569|gb|EFC33309.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni 414]
          Length = 657

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/656 (49%), Positives = 440/656 (67%), Gaps = 6/656 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +D+ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+ 
Sbjct: 3   ELTSDFKPSPDQEKAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMSH 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R S
Sbjct: 63  NKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR D
Sbjct: 123 ATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               R  FRV GD ++I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y 
Sbjct: 183 NFFDRADFRVQGDIVDIYPAYYEDEVVRLEFFGDELDVMYHYNVLENKKGKDLKRFILYP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+ 
Sbjct: 243 TSQFSVGETRLKQAIKDIKTELNERLACFEHENKLVEHQRLKQRVEFDLEMLTSTGMCKG 302

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIP-ED--SLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           +ENY+R+LTG   G+ P TLF+Y   +D   L+ VDESHV++PQ  GM+ GD  RK TL 
Sbjct: 303 VENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL F+E+       + VSATP   ELE  +  I  QI+RPTGL+DP 
Sbjct: 363 DYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLELELSKENIFHQIMRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS++  
Sbjct: 423 IELKDSDNQVEILFDESKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDIDA 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GRA
Sbjct: 483 IERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KV+L+   ITKS+Q A+D T +RR+ Q+ +NKK+NI P SVK  I E +     
Sbjct: 543 ARNVNGKVLLFCKKITKSMQEAMDTTNQRRKLQMAYNKKYNITPTSVKRHIEESLKN--- 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+          +   +   +    +K LRKQM  AA  L FE+AA +RDEI +L+
Sbjct: 600 EENLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAALRDEINKLR 655


>gi|126179267|ref|YP_001047232.1| excinuclease ABC subunit B [Methanoculleus marisnigri JR1]
 gi|125862061|gb|ABN57250.1| Excinuclease ABC subunit B [Methanoculleus marisnigri JR1]
          Length = 642

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/659 (50%), Positives = 456/659 (69%), Gaps = 20/659 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +T F ++ D+ P+G QP AI +L  G+   E+ Q LLGVTGSGKTFT+A V+E +Q+P +
Sbjct: 1   MTAFHLKADFKPTGSQPDAIRKLTDGLSRGEQYQTLLGVTGSGKTFTIANVVEEVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLY+EF++FFP N VEYFVSYYDYYQPE+Y+ + D YIEK++ IN +I++
Sbjct: 61  VIAHNKTLAAQLYNEFRSFFPDNRVEYFVSYYDYYQPESYIAKRDLYIEKDAQINPKIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR +AT SLL R D I+V+SVSCIYG+G+ E++  M  ++K+ D + + +++  LV  Q+
Sbjct: 121 MRLAATASLLSRPDTIIVASVSCIYGLGNPENFQGMGFEMKVRDRMRRDDIIRRLVDIQF 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI ++ G FRV GD+I+I P +  ++  R+ +FG++I+ ISE    +G+++  ++  
Sbjct: 181 ERNDIELMPGRFRVKGDTIDIVPGYFNNI-IRIELFGDEIDRISEIDKTSGERLEAMDYF 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y   H+V P      A+  I++EL+  L  L     +LEA RL QR  YD++ML  TG
Sbjct: 240 FVYPARHFVAPEEEKERAIASIEQELEEWLPNL----DMLEAHRLRQRTLYDIDMLRETG 295

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           +C+ IENYSR+  GR  GE P  L +Y PED L+ +DESH T+PQ+ GMY GD+ RK +L
Sbjct: 296 TCKGIENYSRHFDGRKAGEQPYCLLDYFPEDFLMVIDESHQTLPQVRGMYNGDYSRKKSL 355

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS  DNRPL+FEE++      I VSATPG +EL++    + EQIIRPTGLVDP
Sbjct: 356 VDYGFRLPSAFDNRPLKFEEFSGYMKNVIFVSATPGDYELKRSS--VAEQIIRPTGLVDP 413

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VEIR    Q+ DV  EI    ++G RILLT LTKR+AE+L+EYL E+ I+ RY+HSE+ 
Sbjct: 414 AVEIRPIEGQIPDVMTEIRATIERGDRILLTTLTKRLAEELSEYLAEQGIKTRYLHSEID 473

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER EIIR LRLGK+DVLVGINLLREGLDIPE G V ILDADKEGFLR   SL+QTIGR
Sbjct: 474 TIERTEIIRQLRLGKYDVLVGINLLREGLDIPEVGFVGILDADKEGFLRDARSLVQTIGR 533

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNVN+KV+LYADT+T SI+ A+ ET RRR  QL++N +H I PQ++ + I E      
Sbjct: 534 AARNVNAKVVLYADTMTDSIKKAMAETGRRRAMQLDYNVRHGITPQTIVKPIRE------ 587

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            ++   T+I        + K +    +  L   M  AA+ L FE A  +RD IKRL+  
Sbjct: 588 -KEVDITDIK------HVPKSEVPNLIIELEADMREAAERLEFERAIALRDMIKRLQEG 639


>gi|332665062|ref|YP_004447850.1| UvrABC system protein B [Haliscomenobacter hydrossis DSM 1100]
 gi|332333876|gb|AEE50977.1| UvrABC system protein B [Haliscomenobacter hydrossis DSM 1100]
          Length = 673

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/669 (48%), Positives = 449/669 (67%), Gaps = 13/669 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ + Y P+GDQP AIA+L   +++ E+ Q+LLGVTGSGKTFT+A VI  + RP +V+ 
Sbjct: 3   FQLVSKYSPTGDQPLAIAKLTDSLNAGERTQVLLGVTGSGKTFTIANVIANVNRPTLVLT 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK L AQLY E + FFP NAVEYFVSYYDYYQPEAY+  +DTYIEK+  INEQ+D++R 
Sbjct: 63  HNKTLTAQLYGELQEFFPDNAVEYFVSYYDYYQPEAYLSVSDTYIEKDLLINEQVDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT +LL  R D I+V+SVSCIYG+G+ E Y   I++++ G  + +   L  LV+  Y R
Sbjct: 123 RATSNLLSGRRDIIIVASVSCIYGMGNPEDYKSGIIRIQKGQVISRNAFLYKLVESLYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +I   R TFRV GD+++I   ++ D  +R+  FG++I+EI      TG++I  +    I
Sbjct: 183 TEIEFKRATFRVRGDTVDINLPYV-DYGYRIKFFGDEIDEIEMIEIETGKRIDRMNDAAI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + Y+ P+   N  ++ I++EL  +    E+EGRLLEA+R+ +R  +DLEM++  G C
Sbjct: 242 FPANLYIAPKDRQNMIIRQIEDELHDQEKYFEREGRLLEAKRIHERTLFDLEMIKELGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +ENYSR+  GR  G  P  L +Y PED LL +DESHVTIPQI GMY GD  RK +L E
Sbjct: 302 NGVENYSRFFDGRMVGTRPFCLLDYFPEDYLLVIDESHVTIPQIRGMYGGDRARKLSLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS MDNRPL F E+  +    I VSATPG +E EQ  G++VEQ+IRPTGL+DPP+
Sbjct: 362 HGFRLPSAMDNRPLNFTEFEGMFSQVIFVSATPGDYEFEQTGGVVVEQLIRPTGLLDPPI 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R +  Q++D+ +EI     +  R+L+T LTKRMAE+LT+YL + NI++RY+HSEV T+
Sbjct: 422 EVRPSLNQIDDLLEEIQQRIAREERVLVTTLTKRMAEELTKYLAKLNIKIRYIHSEVDTM 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+EI+RDLRLG FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL QT GRAA
Sbjct: 482 ERVEILRDLRLGGFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNDRSLTQTAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VI YAD IT S+Q  IDET RRR  Q+ +N++  I P++V +   E+++   + 
Sbjct: 542 RNSNGLVIFYADKITDSMQRTIDETERRRVIQMAYNEERGITPKTVFKSKEEILNQRSIL 601

Query: 740 DA-----------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           D                I+ D     +++ + +       ++M  AA  L+F  AA++RD
Sbjct: 602 DVRGKTSQAYIEPENITIAADPLVSYMTRDQLEKLASETERKMKQAAKELDFITAAQMRD 661

Query: 789 EIKRLKSSP 797
           E+   +   
Sbjct: 662 ELFAFREKL 670


>gi|294784643|ref|ZP_06749932.1| excinuclease ABC subunit B [Fusobacterium sp. 3_1_27]
 gi|294487859|gb|EFG35218.1| excinuclease ABC subunit B [Fusobacterium sp. 3_1_27]
          Length = 663

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/655 (52%), Positives = 480/655 (73%), Gaps = 4/655 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F++ +DY P+GDQPAAI  ++K I +  K Q+LLGVTGSGKTFT+A VIE +QRPA
Sbjct: 2   ENNLFKIHSDYKPTGDQPAAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPA 61

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID
Sbjct: 62  LIIAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEID 121

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     + +KEL+  L+  +
Sbjct: 122 KLRNAATTALIHRRDVIIVASVSSIYGLGSPDTYRRMTIPIDKQTGISRKELMKKLIALR 181

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VE 375
           Y R DI   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQK++  +E
Sbjct: 182 YDRNDIAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLE 240

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I IY  + Y+T     +  +K IK++LK+ + + E + +LLEAQRL+QR  YDLEM+  
Sbjct: 241 RIVIYPATQYLTADDDKDRIIKEIKDDLKVEVKKFEDDKKLLEAQRLKQRTEYDLEMITE 300

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C+ IENYSRYL+G+NPGE P TLFEY P+D +LF+DESH+T+PQ+ GMY GD  RK 
Sbjct: 301 IGYCKGIENYSRYLSGKNPGETPDTLFEYFPKDFILFIDESHITVPQVRGMYNGDRARKE 360

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           +L E GFRL + +DNRPLRFEE+      T+ +SATPG +E+E     I EQ+IRPTG+V
Sbjct: 361 SLVENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNHIAEQLIRPTGIV 420

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR  + QV+D+ DEI   A +  R+L+T LTK++AE+LTEY  E  ++V+YMHS+
Sbjct: 421 DPEIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSD 480

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTI
Sbjct: 481 IDTLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTI 540

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  ++I+P+S+ ++I E  D 
Sbjct: 541 GRAARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYNHIDPKSIVKEIAE--DL 598

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           I L+         + +++  +K   +  +  L K++    + L+FE+A  +RDE+
Sbjct: 599 INLDYGIEEKKFENNKKVFRNKADIEKEITKLEKKIKKLVEELDFEQAIVLRDEM 653


>gi|88596906|ref|ZP_01100142.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|88190595|gb|EAQ94568.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni
           84-25]
          Length = 657

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/656 (49%), Positives = 436/656 (66%), Gaps = 6/656 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+ 
Sbjct: 3   ELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSH 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R S
Sbjct: 63  NKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR D
Sbjct: 123 ATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y 
Sbjct: 183 NFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILYP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+ 
Sbjct: 243 TSQFSVGEARLKQAIKDIKTELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKG 302

Query: 442 IENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL 
Sbjct: 303 VENYARHLTGLKEGDTPYTLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL F+E+       + VSATP   ELE  +  I  QI+RPTGL+DP 
Sbjct: 363 DYGFRLPSALDNRPLMFDEFIHKDCQFLFVSATPAPLELELSKENIFHQIMRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS++  
Sbjct: 423 IELKDSDNQVEILFDEAKKIIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDIDA 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GRA
Sbjct: 483 IERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KV+L+   ITKS+Q A+D T  RR+ Q  +N+KHNI P SVK  I E +     
Sbjct: 543 ARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQEAYNQKHNITPTSVKRHIEESLKN--- 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+          +   +   +    +K LRKQM  AA  L FE+AA +RDEI +L+
Sbjct: 600 EENLGEIYRKGKKFEKMPANERAKIVKELRKQMLEAAKALEFEKAATLRDEINKLR 655


>gi|325996380|gb|ADZ51785.1| Excinuclease ABC subunit B [Helicobacter pylori 2018]
          Length = 658

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/661 (48%), Positives = 451/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA VI    +P +
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANVIAQTNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  Q  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI     +G R L+T LTK+MAE+L +Y  E  ++VRYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKSVVARGERGLITTLTKKMAEELCKYYAEWGLKVRYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FDVL+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKIHNITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|256384068|gb|ACU78638.1| excinuclease ABC subunit B [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256384900|gb|ACU79469.1| excinuclease ABC subunit B [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455543|gb|ADH21778.1| excinuclease ABC subunit B [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 665

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/656 (48%), Positives = 437/656 (66%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ T Y PSGDQ  AI +L KGI   +K Q+LLG TG+GKTFT+A +I    + A+V+A
Sbjct: 8   YKLVTKYKPSGDQNQAIEKLNKGIIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K  FP N VEYFVS +D++QPEAY+P  D YI+K+S  N ++D MR 
Sbjct: 68  HNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +LL RND IVV+SV+ ++ + +   YS   ++LK+G  +++ ELL+ LV+  Y R 
Sbjct: 128 SACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI    G+F   GD ++I P  + ++ +R+S+F ++IE I     +T   + N+ T+ I+
Sbjct: 188 DIENQLGSFSAKGDVVKIVPGWVNNIMFRISLFDDEIESIHTLNTITNSILDNITTVTIH 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               Y+TP+  L T    I+ EL  RL EL+ E +LLEAQRLEQR  YDLE LE  G C 
Sbjct: 248 PAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L  R+ G+ P  L +Y   D +  +DESH+T+PQI GMY  D  RK TL EY
Sbjct: 308 GIENYSSHLDFRSKGQRPYVLLDYFNNDFITIIDESHITLPQIRGMYNTDRSRKLTLVEY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+N L    I  SATPG +EL+     +V+QIIRPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVVQQIIRPTGLLDPQIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+ +EI+L   Q  R+ +T LT RM+EDLT +L E+NI+V Y+HSE+KTLE
Sbjct: 428 IRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+ DLR G +DV+VG+NLLREGLD+PE  LV ILDADK+GFLR+  SLIQTIGR AR
Sbjct: 488 RSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K I+YADT+++++  AI ET RRR+ Q E NKKHNI P+++ + I E I  +  + 
Sbjct: 548 NVNGKAIMYADTVSQAMDEAIKETNRRRKIQEEFNKKHNITPKTISKAISESI--LSEQT 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             T   +   +      +  +  + +LR++M  AA  L+FE AA +RD I  L++ 
Sbjct: 606 KKTLAKAKKIKDKKQKLQTIQQTIDTLRQEMLQAAKELDFERAAILRDTIIELENE 661


>gi|331703863|ref|YP_004400550.1| Excinuclease ABC subunit B [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802418|emb|CBW54573.1| Excinuclease ABC subunit B [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 665

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/656 (48%), Positives = 437/656 (66%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ T Y PSGDQ  AI +L KGI   +K Q+LLG TG+GKTFT+A +I    + A+V+A
Sbjct: 8   YKLVTKYKPSGDQNQAIEKLNKGIIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K  FP N VEYFVS +D++QPEAY+P  D YI+K+S  N ++D MR 
Sbjct: 68  HNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +LL RND IVV+SV+ ++ + +   YS   ++LK+G  +++ ELL+ LV+  Y R 
Sbjct: 128 SACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI    G+F   GD ++I P  + ++ +R+S+F ++IE I     +T   + N+ T+ I+
Sbjct: 188 DIENQLGSFSAKGDVVKIVPGWVNNIMFRISLFDDEIESIHTLNTITNSILDNITTVTIH 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               Y+TP+  L T    I+ EL  RL EL+ E +LLEAQRLEQR  YDLE LE  G C 
Sbjct: 248 PAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L  R+ G+ P  L +Y   D +  VDESH+T+PQI GMY  D  RK TL EY
Sbjct: 308 GIENYSSHLDFRSKGQRPYVLLDYFNNDFITIVDESHITLPQIRGMYNTDRSRKQTLVEY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+N L    I  SATPG +EL+     +V+QIIRPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVVQQIIRPTGLLDPQIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+ +EI+L   Q  R+ +T LT RM+EDLT +L E+NI+V Y+HSE+KTLE
Sbjct: 428 IRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+ DLR G +DV+VG+NLLREGLD+PE  LV ILDADK+GFLR+  SLIQTIGR AR
Sbjct: 488 RSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K I+YADT+++++  AI ET RRR+ Q E NKKHNI P+++ + I E I  +  + 
Sbjct: 548 NVNGKAIMYADTVSQAMDEAIKETNRRRKIQEEFNKKHNIVPKTISKAISESI--LSEQT 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             T   +   +      +  +  + +LR++M  AA  L+FE AA +RD I  L++ 
Sbjct: 606 KKTLAKAKKIKDKKQKLQTIQQTIDTLRQEMLQAAKELDFERAAILRDTIIELENE 661


>gi|205355522|ref|ZP_03222293.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205346756|gb|EDZ33388.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 657

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/656 (49%), Positives = 439/656 (66%), Gaps = 6/656 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+ 
Sbjct: 3   ELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMSH 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R S
Sbjct: 63  NKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR D
Sbjct: 123 ATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y 
Sbjct: 183 NFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILYP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+ 
Sbjct: 243 TSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKG 302

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIP-ED--SLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           +ENY+R+LTG   G+ P TLF+Y   +D   L+ VDESHV++PQ  GM+ GD  RK TL 
Sbjct: 303 VENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL F+E+       + VSATP   ELE  +  I  QI+RPTGL+DP 
Sbjct: 363 DYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLELELSKENIFHQIMRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS++  
Sbjct: 423 IELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDIDA 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GRA
Sbjct: 483 IERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E +     
Sbjct: 543 ARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKN--- 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+          +   +   +    +K LRKQM  AA  L FE+AA IRDEI +L+
Sbjct: 600 EEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKLR 655


>gi|189485388|ref|YP_001956329.1| UvrABC system protein B [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287347|dbj|BAG13868.1| UvrABC system protein B [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 672

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/660 (50%), Positives = 466/660 (70%), Gaps = 6/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L     + +  Q+LLGVTGSGKTF MA VIE +Q+P ++++
Sbjct: 5   FKLISKFKPSGDQPQAIDKLYHNYLNNKNSQILLGVTGSGKTFVMASVIEKLQKPTLIIS 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNKILAAQ Y+EFK FFP+N+VEYF+SYYDYYQPEAY+P +DTYIEK++SIN+ IDR+R 
Sbjct: 65  PNKILAAQTYAEFKAFFPNNSVEYFISYYDYYQPEAYIPSSDTYIEKDASINDHIDRLRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT S+LER D IVV+SVSCIY +GS + Y  M V++  G       LL+ L+  +Y+R 
Sbjct: 125 KATTSILERKDVIVVASVSCIYNLGSPKDYQNMCVEIIAGKEKTISLLLTELIASRYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++   RG FRV GD++EIFP++LE  A ++   G+ +E I EF P+TG+ I   +   IY
Sbjct: 185 EVEFKRGKFRVKGDTVEIFPAYLE-TAVKIEFCGDTVERIKEFNPVTGEVISKKDKAYIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               +VT +  ++ A+K I+ EL  RL  L+ + + LEAQRLEQR  YD+EML+ TGSC 
Sbjct: 244 PAKLFVTDKYKVDKALKTIQIELNTRLEVLKSQNKFLEAQRLEQRTKYDIEMLKETGSCN 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            IENYSR+L+G   G  P TL +Y     +D L+  DESH+++PQI GMY GD  RK TL
Sbjct: 304 GIENYSRHLSGGLSGAKPTTLIDYFVQENDDFLIITDESHISLPQIRGMYEGDRSRKQTL 363

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS +DNRPL+F+E+  +    ++VSATPG++EL + +  IV+ IIRPTGLVDP
Sbjct: 364 VDFGFRLPSALDNRPLKFQEFEKVIRKFMMVSATPGTYELNRSKKYIVDLIIRPTGLVDP 423

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            + IR    Q++D+  EI    ++  R L+T LTK+M+EDL  YL E+  +V Y+HSE+ 
Sbjct: 424 EIVIRPISGQIQDLMQEIRKNVEKKQRTLVTTLTKKMSEDLAAYLKEKGFKVEYLHSEID 483

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TL RIEI+++LRLGKFDVLVGINLLREGLD+PE  LV +LDADKEGFLRS+ +LIQ  GR
Sbjct: 484 TLTRIEILKNLRLGKFDVLVGINLLREGLDLPEVSLVVVLDADKEGFLRSEPTLIQICGR 543

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--P 735
           AARN++ +VI YADT+T S+Q A+ E  RRR+KQLEHNKK+NI P+S+ + + E+ +   
Sbjct: 544 AARNIDGRVIFYADTVTGSMQRALREMNRRRDKQLEHNKKNNIKPKSIIKAVHELDEFRN 603

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +  E++    ++ +    +++ K     +K +  QM  +ADNL+FE AA +RD +  LK+
Sbjct: 604 LSREESMNHIVAEEQLNYNITPKNIGNIIKEVELQMRESADNLDFESAAALRDRMLELKN 663


>gi|313665659|ref|YP_004047530.1| excinuclease ABC, B subunit [Mycoplasma leachii PG50]
 gi|312949747|gb|ADR24343.1| excinuclease ABC, B subunit [Mycoplasma leachii PG50]
          Length = 665

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/656 (49%), Positives = 438/656 (66%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ T Y PSGDQ  AI +L K I   +K Q+LLG TG+GKTFT+A +I    + A+V+A
Sbjct: 8   YKLVTKYKPSGDQNQAIEKLNKAIIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K  FP N VEYFVS +D++QPEAY+P  D YI+K+S  N ++D MR 
Sbjct: 68  HNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +LL RND IVV+SV+ ++ + +   YS   ++LK+G  +++ ELL+ LV+  Y R 
Sbjct: 128 SACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI    G+F   GD ++I P  + ++ +R+S+F ++IE I+    +T   + N+ T+ I+
Sbjct: 188 DIENQLGSFSAKGDVVKIVPGWVNNIMFRISLFDDEIESINTLNTITNSILDNITTVTIH 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               Y+TP+  L T    I+ EL  RL EL+ E +LLEAQRLEQR  YDLE LE  G C 
Sbjct: 248 PAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L  R+ G+ P  L +Y   D +  VDESH+T+PQI GMY  D  RK TL EY
Sbjct: 308 GIENYSSHLDFRSKGQRPYVLLDYFNNDFITIVDESHITLPQIRGMYNTDRSRKLTLVEY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+N L    I  SATPG +EL+     +V+QIIRPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVVQQIIRPTGLLDPQIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+ +EI+L   Q  R+ +T LT RM+EDLT +L E+NI+V Y+HSE+KTLE
Sbjct: 428 IRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+ DLR G +DV+VG+NLLREGLD+PE  LV ILDADK+GFLR+  SLIQTIGR AR
Sbjct: 488 RSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K I+YADTI++++  AI ET RRR+ Q E NKKHNI P+++ + I E I     + 
Sbjct: 548 NVNGKAIMYADTISQAMDEAIKETNRRRKIQEEFNKKHNIVPKTISKAISESILSEQTKK 607

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           A      I  ++  L  +  +  + +LR++M  AA  L+FE AA +RD I  L++ 
Sbjct: 608 ALAKAKKIKDKKQKL--QTIQQTIDNLRQEMLQAAKELDFERAAILRDTIIELENE 661


>gi|1737482|gb|AAC46270.1| UvrB [Helicobacter pylori]
          Length = 658

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/661 (48%), Positives = 451/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +P +
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAVKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +D RPL+F+E+       + VSATP   ELE  Q  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDTRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI     +G R+L+T LTK+MAE+L +Y  E  ++VRYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKSVVARGERVLITTLTKKMAEELCKYYAEWGLKVRYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FDVL+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIKIAKALKKDKMPKSEREKIIKELDKKMREHAKNLDFEEAMRLRDEIAQLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|256846273|ref|ZP_05551730.1| excinuclease ABC, B subunit [Fusobacterium sp. 3_1_36A2]
 gi|256718042|gb|EEU31598.1| excinuclease ABC, B subunit [Fusobacterium sp. 3_1_36A2]
          Length = 663

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/655 (52%), Positives = 480/655 (73%), Gaps = 4/655 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F++ +DY P+GDQPAAI  ++K I +  K Q+LLGVTGSGKTFT+A VIE +QRP+
Sbjct: 2   ENNLFKIHSDYKPTGDQPAAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPS 61

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID
Sbjct: 62  LIIAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEID 121

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     + +KEL+  L+  +
Sbjct: 122 KLRNAATAALIHRRDVIIVASVSSIYGLGSPDTYRRMTIPIDKQTGISRKELMKRLIALR 181

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VE 375
           Y R D+   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQK++  +E
Sbjct: 182 YDRNDVAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLE 240

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I IY  + Y+T     +  +K IK++LK+ + + E + +LLEAQRL+QR  YDLEM+  
Sbjct: 241 RIVIYPATQYLTADNDKDRIIKEIKDDLKVEVKKFEDDKKLLEAQRLKQRTEYDLEMITE 300

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C+ IENYSRYL+G+NPGE P TLFEY P+D +LF+DESH+T+PQ+ GMY GD  RK 
Sbjct: 301 IGYCKGIENYSRYLSGKNPGETPDTLFEYFPKDFILFIDESHITVPQVRGMYNGDRARKE 360

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           +L E GFRL + +DNRPLRFEE+      T+ +SATPG +E+E     I EQ+IRPTG+V
Sbjct: 361 SLVENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNHIAEQLIRPTGIV 420

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR  + QV+D+ DEI   A +  R+L+T LTK++AE+LTEY  E  ++V+YMHS+
Sbjct: 421 DPEIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSD 480

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTI
Sbjct: 481 IDTLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTI 540

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  ++I+P+S+ ++I E  D 
Sbjct: 541 GRAARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYNHIDPKSIVKEIAE--DL 598

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           I L+         + +++  +K   +  +  L K++    + L+FE+A  +RDE+
Sbjct: 599 INLDYGIEEKKFENNKKVFRNKADIEKEITKLEKKIKKLVEELDFEQAIVLRDEM 653


>gi|207092372|ref|ZP_03240159.1| excinuclease ABC subunit B [Helicobacter pylori HPKX_438_AG0C1]
          Length = 658

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/661 (48%), Positives = 453/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA+
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +IR ++++
Sbjct: 181 SRNEVVFDRGSFRAMGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIRRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  +  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +G R+L+T LTK+MAE+L +Y  E  ++ RYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARGERVLITTLTKKMAEELCKYYAEWGLKARYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  +IR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHLIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|86151710|ref|ZP_01069924.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|218562319|ref|YP_002344098.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|315124185|ref|YP_004066189.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|14195312|sp|Q9PPM7|UVRB_CAMJE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|85841339|gb|EAQ58587.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|112360025|emb|CAL34817.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|315017907|gb|ADT66000.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 657

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/656 (49%), Positives = 439/656 (66%), Gaps = 6/656 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+ 
Sbjct: 3   ELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSH 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R S
Sbjct: 63  NKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR D
Sbjct: 123 ATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y 
Sbjct: 183 NFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILYP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+ 
Sbjct: 243 TSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKG 302

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIP-ED--SLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           +ENY+R+LTG   G+ P TLF+Y   +D   L+ VDESHV++PQ  GM+ GD  RK TL 
Sbjct: 303 VENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL F+E+       + VSATP   ELE  +  I  QI+RPTGL+DP 
Sbjct: 363 DYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLELELSKENIFHQIMRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS++  
Sbjct: 423 IELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDIDA 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GRA
Sbjct: 483 IERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E +     
Sbjct: 543 ARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKN--- 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+          +   +   +    +K LRKQM  AA  L FE+AA IRDEI +L+
Sbjct: 600 EEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKLR 655


>gi|284925936|gb|ADC28288.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 657

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/656 (49%), Positives = 439/656 (66%), Gaps = 6/656 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+ 
Sbjct: 3   ELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSH 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R S
Sbjct: 63  NKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR D
Sbjct: 123 ATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y 
Sbjct: 183 NFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILYP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+ 
Sbjct: 243 TSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKG 302

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIP-ED--SLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           +ENY+R+LTG   G+ P TLF+Y   +D   L+ VDESHV++PQ  GM+ GD  RK TL 
Sbjct: 303 VENYARHLTGLKKGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL F+E+       + VSATP   ELE  +  I  QI+RPTGL+DP 
Sbjct: 363 DYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLELELSKENIFHQIMRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS++  
Sbjct: 423 IELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDIDA 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GRA
Sbjct: 483 IERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E +     
Sbjct: 543 ARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKN--- 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+          +   +   +    +K LRKQM  AA  L FE+AA IRDEI +L+
Sbjct: 600 EEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKLR 655


>gi|86149808|ref|ZP_01068037.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85839626|gb|EAQ56886.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni
           CF93-6]
          Length = 657

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/656 (49%), Positives = 437/656 (66%), Gaps = 6/656 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+ 
Sbjct: 3   ELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMSH 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R +
Sbjct: 63  NKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLN 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR D
Sbjct: 123 ATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y 
Sbjct: 183 NFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILYP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+ 
Sbjct: 243 TSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKG 302

Query: 442 IENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL 
Sbjct: 303 VENYARHLTGLKEGDTPYTLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL F+E+       + VSATP   ELE  +  I  QI+RPTGL+DP 
Sbjct: 363 DYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLELELSKENIFHQIMRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS++  
Sbjct: 423 IELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDIDA 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GRA
Sbjct: 483 IERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSATSLIQTMGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E +     
Sbjct: 543 ARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKN--- 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+          +   +   +    +K LRKQM  AA  L FE+AA IRDEI +L+
Sbjct: 600 EEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKLR 655


>gi|257460140|ref|ZP_05625244.1| excinuclease ABC, B subunit [Campylobacter gracilis RM3268]
 gi|257442581|gb|EEV17720.1| excinuclease ABC, B subunit [Campylobacter gracilis RM3268]
          Length = 658

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/661 (49%), Positives = 447/661 (67%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++++ + PS DQ  AI  ++ G  S  K Q LLGVTGSGKTFTMA +I+ +  PA+
Sbjct: 1   MQNFKIESKFSPSEDQEKAIEGIVAGFQSGNKYQTLLGVTGSGKTFTMANIIKRLGIPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           VM  NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+S +N++++R
Sbjct: 61  VMTHNKSLAAQLYSEFKGFFPQNHVEYFISYYDYYQPEAYIPRQDLFIEKDSDVNQELER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D I V+SVS  YG+G    Y  M++  +IG     K LL  LV   Y
Sbjct: 121 LRLSATASLLSFDDVITVASVSANYGLGDPAEYKGMVLFFEIGSKFSTKFLLRKLVDMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR D    RG FRV GD I+I+P++  D A+R+  FG++IE +     L  +K ++V+  
Sbjct: 181 KRNDDFFDRGNFRVNGDVIDIYPAYFNDEAFRIEFFGDEIEAMYHLDVLENKKTQSVKKF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  S ++     L + +K I+EEL+ RL   E  G+L+EAQRL+ R+ +DLEML  TG
Sbjct: 241 ILYPTSQFIVGEQRLKSTIKGIEEELEQRLKFFEDAGKLVEAQRLKGRVEFDLEMLGATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+RYLTG+ PGE P +LF+Y     +D L+ VDESHV++PQ  GM+ GD  RK
Sbjct: 301 MCKGIENYARYLTGQKPGETPYSLFDYYESKGKDYLVIVDESHVSLPQFRGMFAGDRSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL EYGFRLPS +DNRPL F+E+   +   + VSATP  +EL+  +G + EQI+RPTGL
Sbjct: 361 ETLVEYGFRLPSALDNRPLMFDEFINKKAKFLFVSATPNDYELQLSRGAVYEQILRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP + ++ +  QVE ++D       +G RIL+TVLTK+MAE+L++Y  E  ++V+YMHS
Sbjct: 421 LDPQIILKDSDNQVEILHDMAKEVIARGERILVTVLTKKMAEELSKYYLELGLKVKYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER E+IR LR G++D+L+GINLLREGLD+PE  L+AI+DADKEGFLRS+TSLIQT
Sbjct: 481 DIDAIERNELIRGLRSGEYDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSRTSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNV+ +V+++   IT S+Q AID T +RR+ Q E+N+ H I P S    I E + 
Sbjct: 541 MGRAARNVHGQVVMFCKKITASMQEAIDITQKRRKFQDEYNRAHGITPHSASRNIEESLK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                +  T  +   A    +   +    +K LRKQM  AA  L FE+AA +RDEI +L+
Sbjct: 601 I----EDGTEILRKGANLEKMPAAERAKIVKELRKQMLEAAAALEFEKAAALRDEIAKLR 656

Query: 795 S 795
            
Sbjct: 657 K 657


>gi|237743581|ref|ZP_04574062.1| excinuclease ABC subunit B [Fusobacterium sp. 7_1]
 gi|229433360|gb|EEO43572.1| excinuclease ABC subunit B [Fusobacterium sp. 7_1]
          Length = 663

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/655 (52%), Positives = 478/655 (72%), Gaps = 4/655 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F++ ++Y P+GDQP AI  ++K I +  K Q+LLGVTGSGKTFT+A VIE +QRP+
Sbjct: 2   ENNLFKIHSEYRPTGDQPTAINSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPS 61

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID
Sbjct: 62  LIIAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEID 121

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     + +KEL+  LV  +
Sbjct: 122 KLRNAATAALIYRRDVIIVASVSSIYGLGSPDTYRRMTIPIDKQTGISRKELIKRLVDLR 181

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VE 375
           Y R D+   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQK++  +E
Sbjct: 182 YNRNDVAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLE 240

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I IY  + Y+T     +  +K IK++LK+ + + E E +LLEAQRL+QR  YDLEM+  
Sbjct: 241 RIVIYPATQYLTADDDKDRIIKEIKDDLKVEVKKFEDEKKLLEAQRLKQRTEYDLEMITE 300

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C+ IENYSRYL G+NPGE P TLFEY P+D LLF+DESH+T+PQI GMY GD  RK 
Sbjct: 301 IGYCKGIENYSRYLAGKNPGETPDTLFEYFPKDFLLFIDESHITVPQIRGMYNGDRARKE 360

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           +L E GFRL + +DNRPLRFEE+      T+ +SATPG +ELE     I EQ+IRPTG+V
Sbjct: 361 SLVENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFELEVSDNHIAEQLIRPTGIV 420

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR  + QV+D+ DEI   A +  R+L+T LTK++AE+LTEY  E  ++V+YMHS+
Sbjct: 421 DPEIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSD 480

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTI
Sbjct: 481 IDTLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTI 540

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  ++I+P+S+ ++I E  D 
Sbjct: 541 GRAARNVEGRVILYADIMTDSMKEAIMETERRRKIQKEYNAYNHIDPKSIVKEIAE--DL 598

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           I L+         + +++  +K   +  +  L K++    + L+FE+A  +RDE+
Sbjct: 599 INLDYGIEEKKFENNKKVFRNKADIEKEITKLEKKIKKLVEELDFEQAIILRDEM 653


>gi|153952519|ref|YP_001398373.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152939965|gb|ABS44706.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 657

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/656 (49%), Positives = 437/656 (66%), Gaps = 6/656 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+ 
Sbjct: 3   ELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSH 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R S
Sbjct: 63  NKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR D
Sbjct: 123 ATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y 
Sbjct: 183 NFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILYP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S +      L  A++ IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+ 
Sbjct: 243 TSQFSVGEARLKQAIRDIKIELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKG 302

Query: 442 IENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL 
Sbjct: 303 VENYARHLTGLKEGDTPYTLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL F+E+       + VSATP   ELE  +  I  QI+RPTGL+DP 
Sbjct: 363 DYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLELELSKENIFHQIMRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS++  
Sbjct: 423 IELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDIDA 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GRA
Sbjct: 483 IERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E +     
Sbjct: 543 ARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKN--- 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+          +   +   +    +K LRKQM  AA  L FE+AA IRDEI +L+
Sbjct: 600 EEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKLR 655


>gi|237741137|ref|ZP_04571618.1| excinuclease ABC subunit B [Fusobacterium sp. 4_1_13]
 gi|229430669|gb|EEO40881.1| excinuclease ABC subunit B [Fusobacterium sp. 4_1_13]
          Length = 663

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/655 (52%), Positives = 479/655 (73%), Gaps = 4/655 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F++ + Y P+GDQPAAI  ++K I +  K Q+LLGVTGSGKTFT+A VIE +QRPA
Sbjct: 2   ENNLFKIHSYYKPTGDQPAAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPA 61

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID
Sbjct: 62  LIIAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEID 121

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     + +KEL+  L+  +
Sbjct: 122 KLRNAATAALIHRRDVIIVASVSSIYGLGSPDTYRKMTIPIDKKTGISRKELMKKLIALR 181

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VE 375
           Y R DI   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQK++  +E
Sbjct: 182 YDRNDIAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLE 240

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I IY  + Y+T     +  +K IK++LK+ + + E + +LLEAQRL+QR  YDLEM+  
Sbjct: 241 RIVIYPATQYLTADNDKDRIIKEIKDDLKVEVKKFEDDKKLLEAQRLKQRTEYDLEMITE 300

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C+ IENYSRYL+G+NPGE P TLFEY P+D +LF+DESH+T+PQ+ GMY GD  RK 
Sbjct: 301 IGYCKGIENYSRYLSGKNPGETPDTLFEYFPKDFILFIDESHITVPQVRGMYNGDRARKE 360

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           +L E GFRL + +DNRPLRFEE+      T+ +SATPG +E+E     I EQ+IRPTG+V
Sbjct: 361 SLVENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNHIAEQLIRPTGIV 420

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR  + QV+D+ DEI   A +  R+L+T LTK++AE+LTEY  E  ++V+YMHS+
Sbjct: 421 DPEIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSD 480

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTI
Sbjct: 481 IDTLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTI 540

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  ++I+P+S+ ++I E  D 
Sbjct: 541 GRAARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYNHIDPKSIVKEIAE--DL 598

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           I L+         + +++  +K   +  +  L K++    + L+FE+A  +RDE+
Sbjct: 599 INLDYGIEEKKFENNKKVFRNKADIEKEITKLEKKIKKLVEELDFEQAIVLRDEM 653


>gi|42561460|ref|NP_975911.1| excinuclease ABC subunit B [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|81829339|sp|Q6MS38|UVRB_MYCMS RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|42492959|emb|CAE77553.1| Excinuclease ABC subunit B [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
          Length = 671

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/656 (48%), Positives = 436/656 (66%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ T Y PSGDQ  AI +L K I   +K Q+LLG TG+GKTFT+A +I    + A+V+A
Sbjct: 14  YKLVTKYKPSGDQNQAIEKLNKAIIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIA 73

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K  FP N VEYFVS +D++QPEAY+P  D YI+K+S  N ++D MR 
Sbjct: 74  HNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRL 133

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +LL RND IVV+SV+ ++ + +   YS   ++LK+G  +++ ELL+ LV+  Y R 
Sbjct: 134 SACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRN 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI    G+F   GD ++I P  + ++ +R+S+F ++IE I     +T   + N+ T+ I+
Sbjct: 194 DIENQLGSFSAKGDVVKIVPGWVNNIMFRISLFDDEIESIHTLNTITNSILDNITTVTIH 253

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               Y+TP+  L T    I+ EL  RL EL+ E +LLEAQRLEQR  YDLE LE  G C 
Sbjct: 254 PAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCS 313

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L  R+ G+ P  L +Y   D +  VDESH+T+PQI GMY  D  RK TL EY
Sbjct: 314 GIENYSSHLDFRSKGQRPYVLLDYFNNDFITIVDESHITLPQIRGMYNTDRSRKLTLVEY 373

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+N L    I  SATPG +EL+     +V+QIIRPTGL+DP +E
Sbjct: 374 GFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVVQQIIRPTGLLDPQIE 433

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+ +EI+L   Q  R+ +T LT RM+EDLT +L E+NI+V Y+HSE+KTLE
Sbjct: 434 IRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLE 493

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+ DLR G +DV+VG+NLLREGLD+PE  LV ILDADK+GFLR+  SLIQTIGR AR
Sbjct: 494 RSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVAR 553

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K I+YADT+++++  AI ET RRR+ Q E NKKHNI P+++ + I E I  +  + 
Sbjct: 554 NVNGKAIMYADTVSQAMDEAIKETNRRRKIQEEFNKKHNIVPKTISKAISESI--LSEQT 611

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             T   +   +      +  +  + +LR++M  AA  L+FE AA +RD I  L++ 
Sbjct: 612 KKTLAKAKKIKDKKQKLQTIQQTIDNLRQEMLQAAKELDFERAAILRDTIIELENE 667


>gi|126642540|ref|YP_001085524.1| excinuclease ABC subunit B [Acinetobacter baumannii ATCC 17978]
          Length = 623

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/623 (55%), Positives = 448/623 (71%), Gaps = 10/623 (1%)

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           MA VI   QRP IVMA NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+
Sbjct: 1   MANVIAQTQRPTIVMAHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTF 60

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304
           IEK+++IN+ ID+MR SATR+LLER D I+V+SVS IYG+G   +Y QM++ +  GD V 
Sbjct: 61  IEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQMLLHVVQGDRVS 120

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + E++  LV+ QY R ++  +RGT+R+ G+ I+IFP+  +  A R+ +F ++++ I  F 
Sbjct: 121 RDEIIRRLVEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFD 180

Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
           PLTG+ +R V  + IY  SHYVTP+  L  A+  IK+EL+ +L    +  +LLEAQR+EQ
Sbjct: 181 PLTGKMVRKVPRVTIYPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQ 240

Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484
           R  YDLEM++  G    IENYSR+L+GR  GE PPTLF+Y+PED+LL +DESHVT+PQI 
Sbjct: 241 RTRYDLEMMQQLGYTNGIENYSRHLSGRPAGEAPPTLFDYVPEDALLIIDESHVTVPQIG 300

Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544
            MY+GD  RK  L  YGFRLPS +DNRP++FEEW  + PTTI VSATP  +ELE+ +  +
Sbjct: 301 AMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTIFVSATPARYELEKSEQ-V 359

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           VEQ++RPTGL+DP +E+R   TQV+DV  EIN+      R+L+T LTKRMAEDLT YL E
Sbjct: 360 VEQVVRPTGLIDPEIEVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKE 419

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
             ++V Y+HS++ T+ER++II +LR G FDVLVGINLLREGLD+PE  LVAILDADKEGF
Sbjct: 420 YGVKVAYLHSDIDTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGF 479

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
           LRS+ SLIQTIGRAARNV  K ILYADTIT S++ AIDET RRR KQ+E N++H I P+S
Sbjct: 480 LRSERSLIQTIGRAARNVKGKAILYADTITDSMRKAIDETERRRAKQIEFNEQHGITPRS 539

Query: 725 VKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG---------KAHLKSLRKQMHLAA 775
              + ++ ID   +      +  +  Q  +LS  +            H+  L K+M  A+
Sbjct: 540 AVRQAVKEIDTGEVLSDDQIDEKVLEQAQALSADERHILSDPKLFSKHITKLEKEMLKAS 599

Query: 776 DNLNFEEAARIRDEIKRLKSSPY 798
            +L FE+AARIRDEI RLK+   
Sbjct: 600 KDLQFEQAARIRDEIVRLKAQML 622


>gi|83319947|ref|YP_424722.1| excinuclease ABC subunit B [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|83283833|gb|ABC01765.1| excinuclease ABC, B subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 665

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/656 (48%), Positives = 436/656 (66%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ T Y PSGDQ  AI +L KGI   +K Q+LLG TG+GKTFT+A +I    + A+V+A
Sbjct: 8   YKLVTKYKPSGDQNQAIEKLNKGIIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K  FP N VEYFVS +D++QPEAY+P  D YI+K+S  N ++D MR 
Sbjct: 68  HNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +LL RND IVV+SV+ ++ + +   YS   ++LK+G  +++ ELL+ LV+  Y R 
Sbjct: 128 SACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI    G+F   GD I+I P  + ++ +R+S+F ++IE I     +T   + N+ T+ I+
Sbjct: 188 DIENQLGSFSAKGDVIKIVPGWVNNIMFRISLFDDEIESIHTLNTITNSILDNITTVTIH 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               Y+TP+  L T    I+ EL  RL EL+ E +LLEAQRLEQR  YDLE LE  G C 
Sbjct: 248 PAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L  R+ G+ P  L +Y   D +  VDESH+T+PQI GMY  D  RK TL EY
Sbjct: 308 GIENYSSHLDFRSKGQRPYVLLDYFNNDFITIVDESHITLPQIRGMYNTDRSRKLTLVEY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+N L    I  SATPG +EL+     +V+QIIRPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVVQQIIRPTGLLDPQIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+ +EI+L   Q  R+ +T LT RM+EDLT +L E+NI+V Y+HSE+KTLE
Sbjct: 428 IRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+ DLR G +DV+VG+NLLREGLD+PE  LV ILDADK+GFLR+  SLIQTIGR AR
Sbjct: 488 RSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K I+YADT+++++  AI ET RRR  Q E NKKHNI P+++ + I E I  +  + 
Sbjct: 548 NVNGKAIMYADTVSQAMDEAIKETNRRRRIQEEFNKKHNITPKTISKAISESI--LSEQT 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             T   +   +      +  +  + +LR++M  AA  L+FE AA +RD I  L++ 
Sbjct: 606 KKTLAKAKKIKDKKQKLQTIQQTIDTLRQEMLQAAKELDFERAAILRDTIIELENE 661


>gi|150021713|ref|YP_001307067.1| excinuclease ABC subunit B [Thermosipho melanesiensis BI429]
 gi|149794234|gb|ABR31682.1| excinuclease ABC, B subunit [Thermosipho melanesiensis BI429]
          Length = 662

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/658 (49%), Positives = 460/658 (69%), Gaps = 2/658 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ PSGDQP AI +L++G+    KVQ LLGVTGSGKTFTMAK++E + +P +V+
Sbjct: 2   MFRVISDFKPSGDQPKAIKKLVEGLKKGYKVQTLLGVTGSGKTFTMAKIVEQINKPTLVI 61

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           +PNK LAAQLYSEFK+FFP N VE+FVSYYDYYQPEAY+P  D YIEK + INE I RMR
Sbjct: 62  SPNKTLAAQLYSEFKSFFPENKVEFFVSYYDYYQPEAYIPTKDLYIEKNADINEIISRMR 121

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA +S+L R D IVV+SVS IY  G    +S +  +++IG  ++  E L+ L K  Y+R
Sbjct: 122 ISAIKSILTRKDVIVVASVSAIYNCGDPNDFSNLNYRVEIGQKLKIGEFLTHLAKIGYER 181

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           ++    +GTFR+ GD+IEIFPS+ +D   ++ +FG++++EI  F PL    I  ++ + I
Sbjct: 182 KEEIDSKGTFRLKGDTIEIFPSYQDD-GIKIELFGDEVDEIFLFDPLNRSVIERLDKVII 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    ++T    +  A+K IKEEL+ +L+   K+G++LEA+RL+QR   DLE+L   G C
Sbjct: 241 YPTREFITSEEKILRAVKTIKEELEEQLVYFRKKGKILEAERLKQRTLNDLELLTALGYC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GR PGEPP +L +Y   D L+F+DESH+TIPQ+  MYRGD+ RK  L E
Sbjct: 301 TGIENYSRHFDGREPGEPPYSLLDYFGNDYLIFIDESHITIPQLRAMYRGDYSRKKNLVE 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP   DNRPLRFEE+       I VSATPG +E++  Q  IVEQIIRPTGLVDP V
Sbjct: 361 YGFRLPCAFDNRPLRFEEFWNKIDKVIFVSATPGEFEIKNSQQ-IVEQIIRPTGLVDPEV 419

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + QV+D+  EI    ++  R L+TVLTK+ AE L+EYL E  I+  Y+HSE+ T+
Sbjct: 420 EVRPTKNQVDDLVGEILKVRKRNERALVTVLTKKTAERLSEYLVELGIKALYLHSELDTI 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+E+++ LR G  +V+VG+NLLREGLD+PE  LVAILD+D EGFLRS+T+L+Q IGR A
Sbjct: 480 ERVEVLKKLRRGDIEVVVGVNLLREGLDLPEVSLVAILDSDTEGFLRSETTLVQIIGRVA 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N +VI+YAD IT +++ AI+ET RRR+ Q+++N+++NI P+++ + + E I    ++
Sbjct: 540 RNQNGRVIMYADRITPAMKRAIEETNRRRKLQMKYNERNNIKPKTIIKPLDEEIFKQFMD 599

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +       +++  +       + ++  L ++M+ AA  L +E+AAR+RDE+  LK   
Sbjct: 600 NENELKEELESIFMLKESLTVEEYVAVLEEEMYKAASELRYEDAARLRDELFMLKEKL 657


>gi|283956090|ref|ZP_06373577.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792410|gb|EFC31192.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 657

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/656 (49%), Positives = 439/656 (66%), Gaps = 6/656 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+ 
Sbjct: 3   ELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSH 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R S
Sbjct: 63  NKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR D
Sbjct: 123 ATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y 
Sbjct: 183 NFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILYP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+ 
Sbjct: 243 TSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKG 302

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIP-ED--SLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           +ENY+R+LTG   G+ P TLF+Y   +D   L+ VDESHV++PQ  GM+ GD  RK TL 
Sbjct: 303 VENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL F+E+       + VSATP   ELE  +  I  QI+RPTGL+DP 
Sbjct: 363 DYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLELELSKENIFHQIMRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS++  
Sbjct: 423 IELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDIDA 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GRA
Sbjct: 483 IERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E +     
Sbjct: 543 ARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPASVKRHIEESLKN--- 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+          +   +   +    +K LRKQM  AA  L FE+AA IRDEI +L+
Sbjct: 600 EEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKLR 655


>gi|78777891|ref|YP_394206.1| excinuclease ABC subunit B [Sulfurimonas denitrificans DSM 1251]
 gi|78498431|gb|ABB44971.1| Excinuclease ABC subunit B [Sulfurimonas denitrificans DSM 1251]
          Length = 660

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/663 (52%), Positives = 449/663 (67%), Gaps = 8/663 (1%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K+   F++ + Y P+GDQP AI  L   I    + Q L GVTGSGKT TMA+VIE ++ P
Sbjct: 2   KNQPNFKVVSPYQPAGDQPEAIKILSDSILKGNRYQALEGVTGSGKTHTMARVIENVKMP 61

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            I+M  NK LAAQLYSEF+ FFP+N VEYFVSYYDYYQPEAY+PR D +IEK+S+IN+++
Sbjct: 62  TIIMTHNKTLAAQLYSEFRQFFPNNHVEYFVSYYDYYQPEAYIPRQDLFIEKDSAINDEL 121

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           +R+R S+T +LL  +D IVV+SVS  YG+G  E Y  M+  + IGD + QK+LL  LV+ 
Sbjct: 122 ERLRLSSTANLLSYDDVIVVASVSANYGLGDPEEYENMVQSVAIGDVIAQKKLLLRLVEM 181

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y R D     G  RV G+S++IFP + E  A R+  FG++IE I  F  +  +K+   +
Sbjct: 182 GYSRNDSYFDSGHIRVNGESLDIFPPYFEQEAIRIEFFGDEIEAIYTFDTIDNKKLEEHK 241

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              IYA S +   +  L  A+K I+EEL  RL   +KEG+L+E QRL+QR+ +DLEML+T
Sbjct: 242 QFTIYATSQFSVRQEKLAVAIKRIEEELDDRLAYFKKEGKLVEHQRLKQRVEFDLEMLQT 301

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFH 492
           TG C+ IENYSR LT +  GE P TL +Y     ++ L+ VDESHV++PQ  GMY GD  
Sbjct: 302 TGMCKGIENYSRLLTEKKIGEAPYTLLDYFALHHKEYLVIVDESHVSLPQYRGMYAGDRA 361

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK  L EYGFRLPS +DNRPL  +E+    P  + VSATP  +ELE    +  EQIIRPT
Sbjct: 362 RKEVLVEYGFRLPSALDNRPLMLDEYINKAPHYLFVSATPSKYELELS-AVKAEQIIRPT 420

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL+DP +EI+ +  QVED++DEI     +  R+L+TVLTK+MAE LT+YL +  IRV YM
Sbjct: 421 GLLDPVIEIKPSTNQVEDIHDEIKKITLKNERVLITVLTKKMAEALTKYLADLGIRVEYM 480

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS++ T++R +IIR LR G+FDVL+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLI
Sbjct: 481 HSDIDTIQRNQIIRSLRQGEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLI 540

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
           QTIGR ARN N +VILYA+ IT S+Q AID T  RRE Q +HNK H I P +   K+ E 
Sbjct: 541 QTIGRGARNSNGRVILYANKITTSMQKAIDTTNARREIQDKHNKIHGITPTTTIRKLDEN 600

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           +      D    N  +D     +   + KA +  L  +M  AA  LNFEEAAR+RDEI +
Sbjct: 601 LKVEEYGDIYQKNKKMD----KMPASERKAMVTQLSLKMKEAARELNFEEAARLRDEIAK 656

Query: 793 LKS 795
           +K 
Sbjct: 657 IKK 659


>gi|108563478|ref|YP_627794.1| excinuclease ABC subunit B [Helicobacter pylori HPAG1]
 gi|122980471|sp|Q1CSF2|UVRB_HELPH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|107837251|gb|ABF85120.1| excinuclease ABC subunit B [Helicobacter pylori HPAG1]
          Length = 658

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/661 (48%), Positives = 453/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA+
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALAKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKNFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  +  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++VRYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|308183218|ref|YP_003927345.1| excinuclease ABC subunit B [Helicobacter pylori PeCan4]
 gi|308065403|gb|ADO07295.1| excinuclease ABC subunit B [Helicobacter pylori PeCan4]
          Length = 658

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/661 (48%), Positives = 451/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +P +
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANTNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRVYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNIAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  Q  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|208435009|ref|YP_002266675.1| excinuclease ABC subunit B [Helicobacter pylori G27]
 gi|208432938|gb|ACI27809.1| excinuclease ABC subunit B [Helicobacter pylori G27]
          Length = 663

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/661 (48%), Positives = 453/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA+
Sbjct: 6   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPAL 65

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 66  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 125

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 126 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 185

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 186 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV 245

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 246 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 305

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 306 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 365

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  +  + EQIIRPTGL
Sbjct: 366 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGL 425

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++VRYMHS
Sbjct: 426 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMHS 485

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FDVL+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 486 EIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 545

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E + 
Sbjct: 546 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELK 605

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 606 L----RDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLR 661

Query: 795 S 795
           +
Sbjct: 662 T 662


>gi|86153333|ref|ZP_01071537.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843059|gb|EAQ60270.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 657

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/656 (49%), Positives = 439/656 (66%), Gaps = 6/656 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+ 
Sbjct: 3   ELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSH 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R S
Sbjct: 63  NKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR D
Sbjct: 123 ATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y 
Sbjct: 183 NFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILYP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+ 
Sbjct: 243 TSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKG 302

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIP-ED--SLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           +ENY+R+LTG   G+ P TLF+Y   +D   L+ VDESHV++PQ  GM+ GD  RK TL 
Sbjct: 303 VENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL F+E+       + VSATP   ELE  +  I  QI+RPTGL+DP 
Sbjct: 363 DYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLELELSKENIFHQIMRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  +  I+V+YMHS++  
Sbjct: 423 IELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLKLGIKVKYMHSDIDA 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GRA
Sbjct: 483 IERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E +     
Sbjct: 543 ARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKN--- 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+          +   +   +    +K LRKQM  AA  L FE+AA IRDEI +L+
Sbjct: 600 EEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKLR 655


>gi|148827044|ref|YP_001291797.1| excinuclease ABC subunit B [Haemophilus influenzae PittGG]
 gi|148718286|gb|ABQ99413.1| excinuclease ABC subunit B [Haemophilus influenzae PittGG]
          Length = 612

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/608 (55%), Positives = 440/608 (72%), Gaps = 9/608 (1%)

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR SA
Sbjct: 5   KTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRLSA 64

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           T+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + QY R D 
Sbjct: 65  TKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRNDQ 124

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
              RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V    IY  
Sbjct: 125 AFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIYPK 184

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C  I
Sbjct: 185 THYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCSGI 244

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
           ENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  RK TL EYGF
Sbjct: 245 ENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEYGF 304

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           RLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPTGL+DP +EIR
Sbjct: 305 RLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPTGLLDPLIEIR 364

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
               QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ T+ER+
Sbjct: 365 PVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVERV 424

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG+FDVLVGINLLREGLDIPE  +VAILDADKEGFLRS+ SLIQTIGRAARN+
Sbjct: 425 EIIRDLRLGEFDVLVGINLLREGLDIPEVSIVAILDADKEGFLRSERSLIQTIGRAARNL 484

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           N K ILYAD+ITKS++ AI ET RRREKQ ++N++H I PQ++ +K+ E++D     +  
Sbjct: 485 NGKAILYADSITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLDIGQGANQK 544

Query: 743 TTNISIDAQ---------QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                   +             + K+ +  +K L +QM+  A +L FE+AA IRD++ +L
Sbjct: 545 AKANKQRGKMAAEPTALYNAPKNAKEYQQQIKKLEQQMYKFAQDLEFEKAAAIRDQLHQL 604

Query: 794 KSSPYFQG 801
           +    F  
Sbjct: 605 REQFVFDN 612


>gi|301321364|gb|ADK70007.1| excinuclease ABC, B subunit [Mycoplasma mycoides subsp. mycoides SC
           str. Gladysdale]
          Length = 665

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/656 (48%), Positives = 436/656 (66%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ T Y PSGDQ  AI +L K I   +K Q+LLG TG+GKTFT+A +I    + A+V+A
Sbjct: 8   YKLVTKYKPSGDQNQAIEKLNKAIIENKKHQVLLGATGTGKTFTIANIIAKHNKQALVIA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K  FP N VEYFVS +D++QPEAY+P  D YI+K+S  N ++D MR 
Sbjct: 68  HNKTLAMQLYYELKEMFPENRVEYFVSNFDFFQPEAYIPSKDLYIDKDSRQNMELDMMRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +LL RND IVV+SV+ ++ + +   YS   ++LK+G  +++ ELL+ LV+  Y R 
Sbjct: 128 SACNALLTRNDTIVVASVAALFALQNPLEYSSAFIELKVGQKIKRNELLTWLVRSGYTRN 187

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI    G+F   GD ++I P  + ++ +R+S+F ++IE I     +T   + N+ T+ I+
Sbjct: 188 DIENQLGSFSAKGDVVKIVPGWVNNIMFRISLFDDEIESIHTLNTITNSILDNITTVTIH 247

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               Y+TP+  L T    I+ EL  RL EL+ E +LLEAQRLEQR  YDLE LE  G C 
Sbjct: 248 PAQSYITPQDKLKTICNNIRNELVQRLAELQSENKLLEAQRLEQRTKYDLESLEEFGFCS 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L  R+ G+ P  L +Y   D +  VDESH+T+PQI GMY  D  RK TL EY
Sbjct: 308 GIENYSSHLDFRSKGQRPYVLLDYFNNDFITIVDESHITLPQIRGMYNTDRSRKLTLVEY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F+E+N L    I  SATPG +EL+     +V+QIIRPTGL+DP +E
Sbjct: 368 GFRLPSALDNRPLNFDEFNSLIKQVIYTSATPGDYELDLVNHQVVQQIIRPTGLLDPQIE 427

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q++D+ +EI+L   Q  R+ +T LT RM+EDLT +L E+NI+V Y+HSE+KTLE
Sbjct: 428 IRKTTNQIDDIINEIHLRKLQNERVFITTLTIRMSEDLTAFLQEKNIKVAYLHSELKTLE 487

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+ DLR G +DV+VG+NLLREGLD+PE  LV ILDADK+GFLR+  SLIQTIGR AR
Sbjct: 488 RSEILNDLRKGVYDVVVGVNLLREGLDLPEVSLVCILDADKQGFLRNYRSLIQTIGRVAR 547

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN K I+YADT+++++  AI ET RRR+ Q E NKKHNI P+++ + I E I  +  + 
Sbjct: 548 NVNGKAIMYADTVSQAMDEAIKETNRRRKIQEEFNKKHNIVPKTISKAISESI--LSEQT 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             T   +   +      +  +  + +LR++M  AA  L+FE AA +RD I  L++ 
Sbjct: 606 KKTLAKAKKIKDKKQKLQTIQQTIDNLRQEMLQAAKELDFERAAILRDTIIELENE 661


>gi|307747592|gb|ADN90862.1| UvrABC system protein B [Campylobacter jejuni subsp. jejuni M1]
          Length = 657

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/656 (49%), Positives = 438/656 (66%), Gaps = 6/656 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+ 
Sbjct: 3   ELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSH 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R S
Sbjct: 63  NKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
            T SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR D
Sbjct: 123 TTASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y 
Sbjct: 183 NFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILYP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+ 
Sbjct: 243 TSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKG 302

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIP-ED--SLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           +ENY+R+LTG   G+ P TLF+Y   +D   L+ VDESHV++PQ  GM+ GD  RK TL 
Sbjct: 303 VENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL F+E+       + VSATP   ELE  +  I  QI+RPTGL+DP 
Sbjct: 363 DYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLELELSKENIFHQIMRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS++  
Sbjct: 423 IELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDIDA 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GRA
Sbjct: 483 IERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E +     
Sbjct: 543 ARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKN--- 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+          +   +   +    +K LRKQM  AA  L FE+AA IRDEI +L+
Sbjct: 600 EEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKLR 655


>gi|157414952|ref|YP_001482208.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385916|gb|ABV52231.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           81116]
          Length = 657

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/656 (49%), Positives = 437/656 (66%), Gaps = 6/656 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ + + PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+ 
Sbjct: 3   ELTSKFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSH 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R S
Sbjct: 63  NKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
            T SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR D
Sbjct: 123 TTASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y 
Sbjct: 183 NFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILYP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+ 
Sbjct: 243 TSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKG 302

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIP-ED--SLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           +ENY+R+LTG   G+ P TLF+Y   +D   L+ VDESHV++PQ  GM+ GD  RK TL 
Sbjct: 303 VENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL F+E+       + VSATP   ELE  +  I  QI+RPTGL+DP 
Sbjct: 363 DYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLELELSKENIFHQIMRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS++  
Sbjct: 423 IELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDIDA 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GRA
Sbjct: 483 IERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E +     
Sbjct: 543 ARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKN--- 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+          +   +   +    +K LRKQM  AA  L FE+AA IRDEI +L+
Sbjct: 600 EEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKLR 655


>gi|121612747|ref|YP_001000376.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005322|ref|ZP_02271080.1| excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87249413|gb|EAQ72373.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 657

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/656 (49%), Positives = 439/656 (66%), Gaps = 6/656 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+ 
Sbjct: 3   ELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMSH 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R S
Sbjct: 63  NKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR D
Sbjct: 123 ATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y 
Sbjct: 183 NFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILYP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+ 
Sbjct: 243 TSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKG 302

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIP-ED--SLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           +ENY+R+LTG   G+ P TLF+Y   +D   L+ VDESHV++PQ  GM+ GD  RK TL 
Sbjct: 303 VENYARHLTGLKEGDIPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL F+E+       + VSATP   ELE  +  I  QI+RPTGL+DP 
Sbjct: 363 DYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLELELSKENIFHQIMRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS++  
Sbjct: 423 IELKDSDNQVEFLFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDIDA 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GRA
Sbjct: 483 IERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E +     
Sbjct: 543 ARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKN--- 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+          +   +   +    +K LRKQM  AA  L FE+AA IRDEI +L+
Sbjct: 600 EEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALEFEKAAAIRDEINKLR 655


>gi|257452344|ref|ZP_05617643.1| excinuclease ABC subunit B [Fusobacterium sp. 3_1_5R]
 gi|317058887|ref|ZP_07923372.1| excinuclease ABC subunit B [Fusobacterium sp. 3_1_5R]
 gi|313684563|gb|EFS21398.1| excinuclease ABC subunit B [Fusobacterium sp. 3_1_5R]
          Length = 660

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/657 (50%), Positives = 473/657 (71%), Gaps = 3/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++   Y P+GDQP AI +L+K +  + + Q+LLGVTGSGKTFT+A VIE +QRP +++
Sbjct: 1   MFRLCAKYQPTGDQPIAIEKLVKSLERKNRDQVLLGVTGSGKTFTIANVIEKVQRPTLII 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E+K+FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+S++NE+ID++R
Sbjct: 61  APNKTLAAQLYQEYKSFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSAVNEEIDKLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           ++AT +L+ R D I+V+SVS IYG+GS E Y +M + + +   + + +L+  L+  +Y+R
Sbjct: 121 NAATAALIMRKDVIIVASVSAIYGLGSPEIYKKMTIPIDLKTGISRSKLIERLIALRYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIK 378
            D+  +RGTFRV GD ++I+PS+LE   +R+  +G+D+E ISE + LTG+KI+  +E I 
Sbjct: 181 NDMNFVRGTFRVKGDVVDIYPSYLE-TGYRLEFWGDDLEAISEIHTLTGEKIKKNLERIV 239

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IYA + Y+T    L   +  I+E+    + + +  G+LLEAQRL+QR+ YD+EM++  G 
Sbjct: 240 IYAATQYITEEEDLERIITEIREDQVREVKQFQDSGKLLEAQRLQQRVDYDIEMIKEIGY 299

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENY+RYL G+ PGE P TL +Y PE+ LL +DESHV +PQI GMY GD  RK TL 
Sbjct: 300 CKGIENYARYLAGKLPGETPNTLLDYFPENFLLVLDESHVGVPQIRGMYNGDISRKTTLV 359

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E GFRL + +DNRPL+F+E+      TI VSATPG +E++Q    +VEQ+IRPTG++DP 
Sbjct: 360 ENGFRLKAALDNRPLQFDEFRARTGQTIYVSATPGDYEIQQSGSSVVEQLIRPTGILDPF 419

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R  + QV+D+ +EI+    +  R+L+T LTK+MAE+LTEY  E  ++VRYMHS+V T
Sbjct: 420 IEVRPTKGQVDDLLEEIHKRVVKKQRVLVTTLTKKMAEELTEYYLELGVKVRYMHSDVDT 479

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L+RIEII+ LR G+ DVLVGINLLREGLDIPE  LVAIL+ADKEGFLRS+ SLIQTIGRA
Sbjct: 480 LDRIEIIKLLRKGEIDVLVGINLLREGLDIPEVSLVAILEADKEGFLRSRRSLIQTIGRA 539

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV  +VILY D +T S+ LA++ET RRR  Q  +N  H I P+++ ++I E +  +  
Sbjct: 540 ARNVEGRVILYGDVMTDSMALAMEETKRRRTIQENYNLLHGIEPEAIIKEIAEEMIQLDY 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              +    S  +++   SK++ +  +    K++   +  L+FE+A  +RDE+K L+ 
Sbjct: 600 G-ISEEAFSKKSKKKFHSKEEIEKEIAKCHKKIVKLSKELDFEQAILVRDEMKLLQE 655


>gi|15612106|ref|NP_223758.1| excinuclease ABC subunit B [Helicobacter pylori J99]
 gi|8134789|sp|Q9ZKA0|UVRB_HELPJ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|4155631|gb|AAD06620.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
          Length = 658

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/661 (48%), Positives = 452/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA+
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  YDLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAVKSIEDELALRLKFFKEQDKMLEYNRLKQRTEYDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  Q  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI     +G R+L+T LTK+MAE+L +Y  E  ++VRYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKSVVARGERVLITTLTKKMAEELCKYYAEWGLKVRYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FDVL+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA   T+S+Q A + T+ RR KQ E NK HNI P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKTTQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIKIAKALKKDKMPKSEREKIIKELDKKMRERAKNLDFEEAMRLRDEIAQLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|254302627|ref|ZP_04969985.1| excision endonuclease subunit UvrB [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322819|gb|EDK88069.1| excision endonuclease subunit UvrB [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 663

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/655 (51%), Positives = 476/655 (72%), Gaps = 4/655 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F++ ++Y P+GDQP AI  ++K I +  K Q+LLGVTGSGKTFT+A VIE +QRP+
Sbjct: 2   ENNLFKIHSNYKPTGDQPTAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPS 61

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID
Sbjct: 62  LIIAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEID 121

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     + +KEL+  L+  +
Sbjct: 122 KLRNAATAALIHRRDVIIVASVSSIYGLGSPDTYRRMTIPIDKQTGISRKELMKRLIALR 181

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VE 375
           Y R D+   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQK++  +E
Sbjct: 182 YDRNDVAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLE 240

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I IY  + Y+T     +  ++ IK++LK+ + + E + +LLEAQRL QR  YDLEM+  
Sbjct: 241 RIVIYPATQYLTADDDKDRIIQEIKDDLKVEVKKFEDDKKLLEAQRLRQRTEYDLEMITE 300

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C+ IENYSRYL+G+ PGE P TLFEY P+D LLF+DESH+T+PQ+ GMY GD  RK 
Sbjct: 301 IGYCKGIENYSRYLSGKKPGETPDTLFEYFPKDFLLFIDESHITVPQVRGMYNGDRARKE 360

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           +L E GFRL + +DNRPLRFEE+      T+ +SATPG +E+E     I EQ+IRPTG+V
Sbjct: 361 SLVENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNHIAEQLIRPTGIV 420

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR  + QV+D+ DEI     +  R+L+T LTK++AE+LTEY  E  ++V+YMHS+
Sbjct: 421 DPEIEIRPTKNQVDDLLDEIRKRVAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSD 480

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTI
Sbjct: 481 IDTLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTI 540

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  ++I+P+S+ ++I E  D 
Sbjct: 541 GRAARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYNHIDPKSIIKEIAE--DL 598

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           I L+         + +++  +K   +  +  L K++    + L+FE+A  +RDE+
Sbjct: 599 INLDYGIEEKKFENDKKVFRNKTDIEKEITKLEKKIKKLVEELDFEQAIVLRDEM 653


>gi|315587002|gb|ADU41383.1| excision endonuclease subunit UvrB [Helicobacter pylori 35A]
          Length = 663

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/661 (48%), Positives = 453/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L+K + +    Q L+GVTGSGKT+TMA +I  + +P +
Sbjct: 6   MPLFDLKSPYPPAGDQPQAIEALMKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTL 65

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 66  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 125

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 126 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKHAYKSFLLKLVEMGY 185

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 186 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSV 245

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 246 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 305

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 306 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 365

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  Q  + EQIIRPTGL
Sbjct: 366 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGL 425

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMHS
Sbjct: 426 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS 485

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 486 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 545

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK H+I P++V   + E + 
Sbjct: 546 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEELK 605

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 606 L----RDDEVKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLR 661

Query: 795 S 795
           +
Sbjct: 662 T 662


>gi|57236983|ref|YP_178784.1| excinuclease ABC subunit B [Campylobacter jejuni RM1221]
 gi|81819538|sp|Q5HVA1|UVRB_CAMJR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|57165787|gb|AAW34566.1| excinuclease ABC, B subunit [Campylobacter jejuni RM1221]
 gi|315058089|gb|ADT72418.1| Excinuclease ABC subunit B [Campylobacter jejuni subsp. jejuni S3]
          Length = 657

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/656 (49%), Positives = 436/656 (66%), Gaps = 6/656 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+ 
Sbjct: 3   ELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSH 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R S
Sbjct: 63  NKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR D
Sbjct: 123 ATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y 
Sbjct: 183 NFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILYP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+ 
Sbjct: 243 TSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKG 302

Query: 442 IENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK TL 
Sbjct: 303 VENYARHLTGLKEGDTPYTLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL F+E+       + VSATP   ELE  +  I  QI+RPTGL+DP 
Sbjct: 363 DYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLELELSKENIFHQIMRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS++  
Sbjct: 423 IELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDIDA 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GRA
Sbjct: 483 IERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NKK+NI P SVK  I E +     
Sbjct: 543 ARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKN--- 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           E+          +   +   +     K LRKQM  AA  L FE+AA IRDEI +L+
Sbjct: 600 EEDLGEIYRKGKKLEKMPASERAKLAKELRKQMLEAAKALEFEKAAAIRDEINKLR 655


>gi|21229391|ref|NP_635313.1| excinuclease ABC subunit B [Methanosarcina mazei Go1]
 gi|23822295|sp|Q8PRZ9|UVRB_METMA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|20907982|gb|AAM32985.1| Excinuclease ABC, subunit B [Methanosarcina mazei Go1]
          Length = 670

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/699 (47%), Positives = 460/699 (65%), Gaps = 32/699 (4%)

Query: 99  MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158
           M  S Q    L ++    + + + W             +   F++ +D+ P G QP AI 
Sbjct: 1   MKVSSQTTGELAENKFETIYDERYW-------------ESPPFKLVSDFEPKGSQPEAIE 47

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +L+ G+   E  Q LLGVTGSGKT+T+A VI  +++P +V+A NK LAAQLY+EF+ FFP
Sbjct: 48  KLVDGLKKGEPFQTLLGVTGSGKTYTVANVINQIRKPTLVIAHNKTLAAQLYNEFREFFP 107

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
            N VEYFVSYYDYYQPE+Y+P  D YIEK++ IN +I++MR +AT SL+ R D IVV+SV
Sbjct: 108 ENRVEYFVSYYDYYQPESYLPAKDQYIEKDAMINPKIEQMRLAATASLMSRQDVIVVASV 167

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           SCIYG+G+ E++ +M  +LK+GD V +KE+L  L+  Q++R D+ ++ G FRV GD+I+I
Sbjct: 168 SCIYGLGNPENFQKMGFELKVGDKVHRKEILEKLIDIQFERNDLELMPGRFRVKGDTIDI 227

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
            P + +D+  R+ +FG++++ ISE    TGQ+  +++   +Y   HYV P     +A+++
Sbjct: 228 IPGYFDDI-IRIELFGDEVDRISEVDKQTGQRKEDMDYFFVYPARHYVIPEEEQKSAIQF 286

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           I       L E   E  LLE+ RL+QR  YD+EM++ TGSC+ IENYSR+   R PGE P
Sbjct: 287 I----LEELEERLPELGLLESHRLKQRTLYDMEMIQETGSCKGIENYSRHFDHRQPGEKP 342

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
             L +Y P+D LL +DESH TIPQ+ GMY GD  RK +L +YGFRLPS  DNRPL+FEE+
Sbjct: 343 FCLLDYFPDDFLLVIDESHQTIPQLHGMYNGDRSRKKSLVDYGFRLPSAFDNRPLKFEEF 402

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
                  I VSATP  +E E     +VEQIIRPTGLVDP VE+R    QV DV  EI   
Sbjct: 403 EKYMKNVIFVSATPADYEREHS-SRVVEQIIRPTGLVDPEVEVRPLEGQVRDVMQEIRKI 461

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++G R L+T LTK++AE+LTE+L +  I+ RY+HS++KT+ER EIIR+LRLGKFDVLVG
Sbjct: 462 VERGDRALVTTLTKKLAEELTEFLAKNEIKARYLHSDIKTIERTEIIRELRLGKFDVLVG 521

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           INLLREGLDIPE G + ILDADKEGFLR+  SLIQ IGRAARN +S+V+LYAD +T SI+
Sbjct: 522 INLLREGLDIPEVGFIGILDADKEGFLRNSKSLIQIIGRAARNSSSRVVLYADNMTDSIK 581

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
            A+ ET RRR  Q+ +N++H I P ++++ I E              +        + K 
Sbjct: 582 SAVQETERRRSMQIAYNEEHGIVPTTIRKPIRE-------------KVVDITDTKHIPKT 628

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                +  L  +M  AAD L+FE A ++R+ IK+L+   
Sbjct: 629 DIPNVIIELDAEMREAADRLDFERAIQVRELIKKLEKEI 667


>gi|73670177|ref|YP_306192.1| excinuclease ABC subunit B [Methanosarcina barkeri str. Fusaro]
 gi|72397339|gb|AAZ71612.1| Excinuclease ABC subunit B [Methanosarcina barkeri str. Fusaro]
          Length = 670

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/661 (50%), Positives = 450/661 (68%), Gaps = 19/661 (2%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D   F++ +D+ P G QP AI +L++G+   E+ Q LLGVTGSGKT+T+A VI  ++RP 
Sbjct: 26  DSPQFKLVSDFEPKGSQPQAIEKLVEGLEKGEQYQTLLGVTGSGKTYTVANVINQVRRPT 85

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LAAQLY+EFK FFP N VEYFVSYYDYYQPE+Y+P  + YIEK++ IN +I+
Sbjct: 86  LVIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYLPARNQYIEKDAQINPKIE 145

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR +AT SL+ R D IVV+SVSCIYG+G+ E++ +M  +LK+GD V++KE+L  LV+ Q
Sbjct: 146 QMRLAATASLMSRQDVIVVASVSCIYGLGNPENFQKMGFELKVGDKVQRKEILQKLVEIQ 205

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           ++R D+ ++ G FRV GD+I+I P + +++  R+ +FG++++ ISE    TGQ+   ++ 
Sbjct: 206 FERNDLELMPGRFRVKGDTIDIIPGYFDNI-IRIELFGDEVDRISEVDKQTGQRTGEMDY 264

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y   HYV P     +A++ I       L E   E  LLE+ RL+QR  YD+EM++ T
Sbjct: 265 FFVYPARHYVIPEEEQKSAIQSI----LEELEEHLPELGLLESHRLKQRTIYDMEMIQET 320

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           GSC+ IENYSR+   R PGE P  L +Y PED L+ +DESH TIPQ+ GMY GD  RK +
Sbjct: 321 GSCKGIENYSRHFDHRQPGEQPFCLLDYFPEDFLMVIDESHQTIPQLHGMYNGDRSRKKS 380

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS  DNRPL+F+E+       I VSATP  +E E     IVEQIIRPTGLVD
Sbjct: 381 LVDYGFRLPSAYDNRPLKFDEFEKYMRNVIFVSATPSDYEREHS-AHIVEQIIRPTGLVD 439

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P VEIR    QV DV  EI    ++G R L+T LTK++AE+LTEYL    I+ RY+HS++
Sbjct: 440 PEVEIRPLEGQVRDVMQEIRKIVERGDRALVTTLTKKLAEELTEYLARNEIKARYLHSDI 499

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           KT+ER EIIR+LRLGKFDVLVGINLLREGLDIPE G + ILDADKEGFLR   SLIQ IG
Sbjct: 500 KTIERTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDSKSLIQIIG 559

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN +SKV+LYAD +T SI+ A+ ET RRR  Q+ +NK+H I P ++++ I E     
Sbjct: 560 RAARNASSKVVLYADNMTDSIKKAVTETERRRSMQIAYNKEHGIVPTTIRKPIRE----- 614

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                    +        + K      +  L  +M  AAD L+FE A ++R+ IK+L+  
Sbjct: 615 --------KVVDITDTKHIPKTDIPNMIIELETEMREAADRLDFERAIQVREMIKKLEKE 666

Query: 797 P 797
            
Sbjct: 667 I 667


>gi|217033092|ref|ZP_03438557.1| hypothetical protein HPB128_23g10 [Helicobacter pylori B128]
 gi|298735886|ref|YP_003728411.1| excinuclease ABC subunit B [Helicobacter pylori B8]
 gi|216945193|gb|EEC23882.1| hypothetical protein HPB128_23g10 [Helicobacter pylori B128]
 gi|298355075|emb|CBI65947.1| excinuclease ABC subunit B [Helicobacter pylori B8]
          Length = 658

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/661 (48%), Positives = 451/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +P +
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  +  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|154148242|ref|YP_001407219.1| excinuclease ABC subunit B [Campylobacter hominis ATCC BAA-381]
 gi|189037954|sp|A7I3X8|UVRB_CAMHC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|153804251|gb|ABS51258.1| excinuclease ABC, B subunit [Campylobacter hominis ATCC BAA-381]
          Length = 657

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/661 (49%), Positives = 452/661 (68%), Gaps = 8/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + PS DQ  AI  +   I +  K Q LLGVTGSGKTFTMA +I+ +Q PA+
Sbjct: 1   MKNFEIVSKFSPSKDQQNAIENITASIKNGNKYQTLLGVTGSGKTFTMANIIKNLQMPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M  NK LAAQLYSEFK FFP N +EYF+SYYDYYQPEAY+PR D +IEK+SSIN++++R
Sbjct: 61  IMTHNKSLAAQLYSEFKGFFPKNHIEYFISYYDYYQPEAYIPRQDLFIEKDSSINDELER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D + ++SVS  YG+G+   Y  M++ L+I      K LL  LV   Y
Sbjct: 121 LRLSATASLLSFDDVVTIASVSANYGLGNPAEYQGMVLFLEINKKFSLKFLLRKLVDMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D    RG FRV GD I+I+P++  D A R+  FG++++++  F  +  +K +N++  
Sbjct: 181 SRNDTYFDRGDFRVNGDIIDIYPAYFNDEAIRLEFFGDELDDMYHFDVIENKKTQNLKKF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  S ++     L  A+K I+ EL  RL      G+L+EAQRL+QR+ +DLEMLE+TG
Sbjct: 241 ILYPTSQFIVGENRLKEAIKGIENELGERLEFFNDNGKLVEAQRLKQRVDFDLEMLESTG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+RYLTG+N GE P +LF+Y      D L+ +DESHV++PQ  GMY GD  RK
Sbjct: 301 MCKGIENYARYLTGQNAGETPYSLFDYYEIKGMDYLVIIDESHVSLPQFRGMYAGDRSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL EYGFRLPS +DNRPL F+E+   R   + VSATP  +ELE  +  +  QI+RPTGL
Sbjct: 361 ETLVEYGFRLPSALDNRPLMFDEFINKRAKFLFVSATPNDYELELSKDHVYYQILRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP + ++ +  QVE +YD          R+L+TVLTK+MAE+L++Y  E  ++V+YMHS
Sbjct: 421 LDPEIVLKDSDNQVEILYDMAKEVIADNERVLVTVLTKKMAEELSKYYLELGLKVKYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER E+IR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS+TSLIQT
Sbjct: 481 DIDAIERNELIRGLRTGDFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSRTSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN KV+++   IT S++ AI+ T +RR+ Q E+NK HNI P+SV   + E + 
Sbjct: 541 MGRAARNVNGKVVMFCKKITNSMKEAIEITQKRRKYQDEYNKTHNITPKSVSRNVEESLK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              L+D    + ++ A++  +   +    +K LRKQM  AAD L FE+AA +RDEIK+++
Sbjct: 601 ---LDDTEAIDRAMKAEK--MPSSERAKIVKDLRKQMMEAADKLEFEKAAALRDEIKKMR 655

Query: 795 S 795
            
Sbjct: 656 K 656


>gi|154249185|ref|YP_001410010.1| excinuclease ABC subunit B [Fervidobacterium nodosum Rt17-B1]
 gi|229557962|sp|A7HKC0|UVRB_FERNB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|154153121|gb|ABS60353.1| excinuclease ABC, B subunit [Fervidobacterium nodosum Rt17-B1]
          Length = 661

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/660 (49%), Positives = 453/660 (68%), Gaps = 5/660 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            +++ +DY P GDQP AI  L+ G++   + Q LLGVTGSGKTFTMA VI+ + RP +++
Sbjct: 2   PYELISDYEPMGDQPQAIESLVNGLNKGYRFQTLLGVTGSGKTFTMANVIKEVNRPVLII 61

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           +PNK LAAQLYSEFK FFP+N VE+F+SYYDYYQPEAYVP  D YIEK + IN+ I RMR
Sbjct: 62  SPNKTLAAQLYSEFKAFFPNNKVEFFISYYDYYQPEAYVPTKDLYIEKSADINDVIARMR 121

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA +S++ R D IVV+SVS IY  G    +  + ++L++G  +   E +  LVK  Y+R
Sbjct: 122 MSAIKSIMTRRDVIVVASVSAIYACGDPRDFDTLNIKLEVGQRINLSEFVKKLVKIGYER 181

Query: 320 -QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
            +DIG+  G+FR+ GD++EIFPS+ ++   R+ +FG++I+ +  F  +    I  ++ + 
Sbjct: 182 KEDIGLT-GSFRLRGDTLEIFPSYQDE-GIRIELFGDEIDRMYTFDRMNRDVIERLDRLT 239

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY    YVT    +  A+K I+ EL  ++ +L  EG+ LEAQRL QR   D+E+L T G 
Sbjct: 240 IYPTKEYVTTEEKIERAVKSIRAELDEQVKKLRSEGKELEAQRLWQRTMNDIELLSTLGY 299

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+  GR PGEPP +L +Y  ED ++F+DESH+TIPQ+  MY G+  RK +L 
Sbjct: 300 CTGIENYSRHFDGRQPGEPPYSLLDYYDEDFIVFIDESHITIPQLRAMYHGEMSRKKSLV 359

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLP   DNRPL+F+E+       I VSATPG +ELE  +  +VEQIIRPTGL+DP 
Sbjct: 360 EYGFRLPCAYDNRPLKFDEFMQKVNQVIFVSATPGPYELEVSEQ-VVEQIIRPTGLIDPQ 418

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE+R  R QV+D+ +EI    ++G + L+TVLTK+ AE L EYL E NIR  Y+HSE+  
Sbjct: 419 VEVRPTRYQVDDLVNEIVQVKKRGEKALVTVLTKKTAEMLAEYLVEFNIRALYLHSELDA 478

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           ++R+E+++ LR G+ DV+VG+NLLREGLD+PE  LVAILDAD EGFLRS+T+LIQ IGR 
Sbjct: 479 IKRVEVLKKLRAGEIDVVVGVNLLREGLDLPEVSLVAILDADTEGFLRSETTLIQIIGRT 538

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM-EVIDPIL 737
           ARN N KVI+YAD IT ++Q AIDET RRR+ Q+E+N+KH I P+++ + +M ++  P  
Sbjct: 539 ARNENGKVIMYADRITPAMQRAIDETNRRRKIQMEYNEKHGIKPKTIIKPLMEDIFAPFR 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            ++     +  D+          + +   L ++M+ AA  L +E+AAR+RDE+ ++K   
Sbjct: 599 DKEEEMYKVYEDSILQMKESLSLEEYAALLEEEMYKAASELRYEDAARLRDELFKIKEEL 658


>gi|242310406|ref|ZP_04809561.1| exinuclease abc subunit b [Helicobacter pullorum MIT 98-5489]
 gi|239522804|gb|EEQ62670.1| exinuclease abc subunit b [Helicobacter pullorum MIT 98-5489]
          Length = 658

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/661 (50%), Positives = 457/661 (69%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + + Y P+GDQP AI +L   I    + Q L+GVTGSGKTF+MA +I+ +Q P +
Sbjct: 1   MQKFVLNSSYKPAGDQPQAIEKLSGFIKDGSQYQTLIGVTGSGKTFSMAHIIQELQMPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M  NK LAAQL+SEFK FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSIN++++R
Sbjct: 61  IMTHNKTLAAQLFSEFKGFFPKNHVEYFISHFDYYQPEAYIPRQDLFIEKDSSINDELER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IVV+SVS  YG+G+ + Y +MI + ++G+S  QK +L  LV+  Y
Sbjct: 121 LRLSATTSLLAYDDTIVVASVSANYGLGNPKEYLEMIEKFEVGESYHQKSMLLRLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR D    RG FRV G+ ++I+P++ ED   R+  FG+++E+I+    +  + IRN+E+ 
Sbjct: 181 KRNDSFFDRGDFRVNGEVVDIYPAYSEDEVVRLEFFGDELEKITILDSIDKKPIRNLESF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA + ++     L  A+K I++EL  RL   +KE +++E +RL+ R  +DLEM+E+TG
Sbjct: 241 VLYAANPFIVGADRLKIAIKSIEKELAERLDFFKKENKMVEYERLKSRTEFDLEMIESTG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+LTG+ PGE P +L +Y     +  LL VDESHV++PQ  GMY GD  RK
Sbjct: 301 ICKGIENYARHLTGKKPGETPYSLLDYFAQKNKPYLLIVDESHVSLPQFGGMYAGDRSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L EYGFRLPS +DNRPL++EE+    P  + VSATP   ELE  +  I EQ+IRPTGL
Sbjct: 361 EVLVEYGFRLPSALDNRPLKYEEFIHKAPHFLFVSATPAQKELELSKNHIAEQLIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+ S   QVE +YDE      +G ++L+T LTK+MAE+LT Y  +  ++VRYMHS
Sbjct: 421 LDPIYEVLSVENQVEVLYDEAKKVIARGEKVLVTSLTKKMAEELTRYYSDLGLKVRYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER +IIR LR+G+FD+LVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNQIIRGLRVGEFDILVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN +V+L+AD IT S++ A++ T  RR KQ   N+ HNI PQSV  K+ E + 
Sbjct: 541 MGRAARNVNGRVLLFADKITPSLKKAMEVTDYRRAKQEAFNQAHNITPQSVSRKLDENLK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              L          +         + +  +K L K+MH AA  L+FEEAAR+RDEI +++
Sbjct: 601 NQDLGMLYEKAKKKEKMPKI----EREKLVKELTKKMHEAAKRLDFEEAARLRDEIAKMR 656

Query: 795 S 795
           S
Sbjct: 657 S 657


>gi|317011311|gb|ADU85058.1| excinuclease ABC subunit B [Helicobacter pylori SouthAfrica7]
          Length = 658

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/661 (48%), Positives = 450/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +P +
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIDALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAKTNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K G+    K  L  LV+  Y
Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKAGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  +  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++VRYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FDVL+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + TT RR KQ E NK HNI P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFETTTYRRAKQEEFNKLHNITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K +    +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEAKIAKALKKDKIPKSERDKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|308186115|ref|YP_003930246.1| UvrABC system protein B [Pantoea vagans C9-1]
 gi|308056625|gb|ADO08797.1| UvrABC system protein B [Pantoea vagans C9-1]
          Length = 613

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/607 (55%), Positives = 431/607 (71%), Gaps = 8/607 (1%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+APNK LAAQLY E K FFP NAVE+FVSYYDYYQPEAYVP +DT+IEK++S+NE I+
Sbjct: 1   MVLAPNKTLAAQLYGEMKEFFPDNAVEFFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 60

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + Q
Sbjct: 61  QMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQ 120

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V  
Sbjct: 121 YTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIDSVVPR 180

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             IY  +HYVTPR  +  AM+ IK EL  R   L +  +LLE QR+ QR  +DLEM+   
Sbjct: 181 FTIYPKTHYVTPRERILQAMEDIKVELADRRRVLLENNKLLEEQRITQRTQFDLEMMSEL 240

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRYL+ R PGE PPTLF+Y+P D LL VDESHVTIPQI GMY+GD  RK T
Sbjct: 241 GYCSGIENYSRYLSARGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYKGDRARKET 300

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRP++FEE+  L P TI VSATPG +ELE+    +V+Q++RPTGL+D
Sbjct: 301 LVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGKYELEKSGDEVVDQVVRPTGLLD 360

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R   TQV+D+  EI+       R+L+TVLTKRMAEDLTEYL E   +VRY+HS++
Sbjct: 361 PIIEVRPVGTQVDDLLSEIHQRVAINERVLVTVLTKRMAEDLTEYLTEHGEKVRYLHSDI 420

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 421 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 480

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID-- 734
           RAARN+N K ILY D IT S+  AI+ET RRREKQ  HN+K+ I PQ + +KI ++++  
Sbjct: 481 RAARNINGKAILYGDKITPSMARAIEETERRREKQQLHNEKNGIVPQGLNKKITDILELG 540

Query: 735 ------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
                     + A        A    L+ +  +  +  L  QM   A NL FE+AA +RD
Sbjct: 541 KNVVKTRGKAKPARPGEAQALADFQLLTPQALQKKIHELEGQMQQHAQNLEFEQAASVRD 600

Query: 789 EIKRLKS 795
           ++  L++
Sbjct: 601 QLHELRT 607


>gi|257465864|ref|ZP_05630175.1| excinuclease ABC subunit B [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917021|ref|ZP_07913261.1| excinuclease ABC subunit B [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313690896|gb|EFS27731.1| excinuclease ABC subunit B [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 660

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/657 (50%), Positives = 473/657 (71%), Gaps = 3/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++   Y P+GDQP AI +L+K +  + + Q+LLGVTGSGKTFT+A VIE +QRP +++
Sbjct: 1   MFRLCAKYQPTGDQPIAIEKLVKSLERKNRDQVLLGVTGSGKTFTIANVIEKVQRPTLII 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E+K+FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+S++NE+ID++R
Sbjct: 61  APNKTLAAQLYQEYKSFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSAVNEEIDKLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           ++AT +L+ R D I+V+SVS IYG+GS E Y +M + + +   + + +L+  L+  +Y+R
Sbjct: 121 NAATAALIMRKDVIIVASVSAIYGLGSPEIYKKMTIPIDLKTGISRSKLIERLIALRYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIK 378
            D+  +RGTFRV GD ++I+PS+LE   +R+  +G+D+E ISE + LTG+KI+  +E I 
Sbjct: 181 NDMNFVRGTFRVKGDVVDIYPSYLE-TGYRLEFWGDDLEAISEIHTLTGEKIKKNLERIV 239

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IYA + Y+T    L   +  I+E+    + + +  G+LLEAQRL+QR+ YD+EM++  G 
Sbjct: 240 IYAATQYITEEEDLERIITEIREDQVREVKQFQDSGKLLEAQRLQQRVDYDIEMIKEIGY 299

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENY+RYL G+ PGE P TL +Y PE+ LL +DESHV +PQI GMY GD  RK TL 
Sbjct: 300 CKGIENYARYLAGKLPGETPNTLLDYFPENFLLVLDESHVGVPQIRGMYNGDISRKTTLV 359

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E GFRL + +DNRPL+F+E+      TI VSATPG +E++Q    +VEQ+IRPTG++DP 
Sbjct: 360 ENGFRLKAALDNRPLQFDEFRARTGQTIYVSATPGDYEIQQSGSSVVEQLIRPTGILDPF 419

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R  + QV+D+ +EI+    +  R+L+T LTK+MAE+LTEY  +  I+VRYMHS+V T
Sbjct: 420 IEVRPTKGQVDDLLEEIHKRVVKKQRVLVTTLTKKMAEELTEYYSDLGIKVRYMHSDVDT 479

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L+RIEII+ LR G+ DVLVGINLLREGLDIPE  LVAIL+ADKEGFLRS+ SLIQTIGRA
Sbjct: 480 LDRIEIIKLLRKGEIDVLVGINLLREGLDIPEVSLVAILEADKEGFLRSRRSLIQTIGRA 539

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNV  +VILY D +T S+ LA++ET RRR  Q  +N  H + P+++ ++I E +  +  
Sbjct: 540 ARNVEGRVILYGDVMTDSMALAMEETKRRRAIQENYNLLHGVEPEAIVKEIAEEMIQLDY 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              +    S  +++   SK++ +  +    K++   +  L+FE+A  +RDE+K L+ 
Sbjct: 600 G-ISEEAFSKKSKKKFHSKEEIEKEIAKCHKKIVKLSKELDFEQAILVRDEMKLLQE 655


>gi|308184852|ref|YP_003928985.1| excinuclease ABC subunit B [Helicobacter pylori SJM180]
 gi|308060772|gb|ADO02668.1| excinuclease ABC subunit B [Helicobacter pylori SJM180]
          Length = 658

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/661 (48%), Positives = 453/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA+
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRTYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I++++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKHLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  +  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKIHNITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|317180847|dbj|BAJ58633.1| excinuclease ABC subunit B [Helicobacter pylori F32]
          Length = 658

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/661 (48%), Positives = 453/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I  + +P +
Sbjct: 1   MPLFDLKSPYLPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+ TTG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISTTG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  +  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKNNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++VRYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRTLEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|322368181|ref|ZP_08042750.1| excinuclease ABC subunit B [Haladaptatus paucihalophilus DX253]
 gi|320552197|gb|EFW93842.1| excinuclease ABC subunit B [Haladaptatus paucihalophilus DX253]
          Length = 685

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/670 (49%), Positives = 455/670 (67%), Gaps = 8/670 (1%)

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
               +N   + T F++   + P+GDQP AI QL +G     + Q LLGVTGSGKT T++ 
Sbjct: 8   PLRPDNPDAE-TDFRVDAPFDPAGDQPEAIEQLAEGFDEGMEKQTLLGVTGSGKTNTVSW 66

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
            IE +Q+P +V+A NK LAAQLY EF+N FP NAVEYFVSYYDYYQPEAYV +TDTYI+K
Sbjct: 67  TIEEVQKPTLVIAHNKTLAAQLYEEFRNLFPDNAVEYFVSYYDYYQPEAYVEQTDTYIDK 126

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           ++SINE+IDR+RHSATRSLL R+D IVV+SVS IYG+G  ++Y  M ++L++G+ + + E
Sbjct: 127 DASINEEIDRLRHSATRSLLTRDDVIVVASVSAIYGLGDPQNYEDMRLRLEVGEEIGRDE 186

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           LL+ LV   Y R D+   +GTFRV GD++EIFP +    A RV ++G++I+ I +  PL 
Sbjct: 187 LLARLVDLNYDRNDMDFTQGTFRVRGDTVEIFPMYG-RYAVRVELWGDEIDRIVKIDPLE 245

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           G+       + ++   HY  P  T+  A+  I+E+L+ R+   E+ G L+ AQR+E+R T
Sbjct: 246 GEVKSQEPAVLVHPAEHYSIPEETMAEAIAEIEEDLERRIRYFERNGDLVAAQRIEERTT 305

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           +DLEM++  G C  IENYS Y T R  G+ P TL +Y P+D L  +DESH T+PQI G +
Sbjct: 306 FDLEMMKEAGYCSGIENYSVYFTEREVGDAPYTLLDYFPDDFLCVIDESHQTVPQIRGQF 365

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
            GD  RK +L E GFRLP+  DNRPL FEE+      T+ +SATP  +E EQ +  IVEQ
Sbjct: 366 AGDKSRKDSLVENGFRLPTAYDNRPLTFEEFEEKSAKTLYISATPADYEREQSEQ-IVEQ 424

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           I+RPT LVDP VE+  A  Q++D+   I+   ++  R+L+T LTKRMAEDLTEYL E  +
Sbjct: 425 IVRPTHLVDPKVEVADASGQIDDLMARIDDRIERDERVLVTTLTKRMAEDLTEYLEEAGV 484

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
            V YMH E  TLER E++R LRLG+FDVLVGINLLREGLDIPE  +VAILDAD++GFLRS
Sbjct: 485 AVEYMHDETDTLERHELVRGLRLGEFDVLVGINLLREGLDIPEVSMVAILDADQQGFLRS 544

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           +T+L+QT+GRAARNVN +V+LYAD +T +++ A+DET RRR  Q E N++H   PQ++++
Sbjct: 545 ETALVQTMGRAARNVNGEVVLYADEVTDAMESAMDETGRRRRIQREFNEEHGYEPQTIEK 604

Query: 728 KIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
            + E   P      + T+     +    + ++    +  L  +M  AA+NL FE AA IR
Sbjct: 605 AVSEANLP-----GSKTDTGGVTRNSPETDEEALEQISRLEDRMEEAANNLEFELAADIR 659

Query: 788 DEIKRLKSSP 797
           D I+ L+   
Sbjct: 660 DRIRELREEF 669


>gi|15645728|ref|NP_207905.1| excinuclease ABC subunit B [Helicobacter pylori 26695]
 gi|2499097|sp|P94846|UVRB_HELPY RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|2314265|gb|AAD08158.1| excinuclease ABC subunit B (uvrB) [Helicobacter pylori 26695]
          Length = 658

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/661 (48%), Positives = 452/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA+
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  +  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +G R+L+T LTK+MAE+L +Y  E  ++ RYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARGERVLITTLTKKMAEELCKYYAEWGLKARYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M     NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECTKNLDFEEAMRLRDEIAQLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|189500951|ref|YP_001960421.1| excinuclease ABC subunit B [Chlorobium phaeobacteroides BS1]
 gi|226695480|sp|B3EMK1|UVRB_CHLPB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|189496392|gb|ACE04940.1| excinuclease ABC, B subunit [Chlorobium phaeobacteroides BS1]
          Length = 690

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/688 (47%), Positives = 446/688 (64%), Gaps = 19/688 (2%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K    F++++ Y P GDQP AI  L +G+   +  Q+LLGVTGSGKTFTMA VI  + +P
Sbjct: 4   KGEQVFRLESSYEPEGDQPQAIEALRQGVMDGQTNQVLLGVTGSGKTFTMANVIAEVNKP 63

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            ++++ NK LAAQLY E K FFPHNAVEYF+SYYD+YQPEAY+P  D YI K+  IN++I
Sbjct: 64  VLLISHNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPTMDKYIAKDLKINDEI 123

Query: 256 DRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           +R+R  AT SLL  R D IVVSSVSCIYG+G+ E +   I++L++    E+   L  L+ 
Sbjct: 124 ERLRLKATSSLLSGRKDVIVVSSVSCIYGLGAPEDWKAQIIELRVNMEKERDSFLQELIS 183

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             + R D  +  G FRV GD I++ P H E+ A RV  FG++IE +  F   TG+   + 
Sbjct: 184 LHFVRDDSDLAPGKFRVRGDVIDLVPMH-EESALRVEFFGDEIERLQLFDHTTGEIFEDE 242

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           E   IY    +V  R  L  AM  I++EL  RL       + +EA+R+E+R  YDLEM++
Sbjct: 243 EYAFIYPARQFVAGREKLQQAMLGIEDELAHRLNVFRSGEKFVEARRIEERTRYDLEMIK 302

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSR+L+GR  GE P  L +Y PED L+ VDESHVT PQI GMY GD  RK
Sbjct: 303 ELGYCSGIENYSRHLSGRKAGERPYCLLDYFPEDYLVIVDESHVTFPQIRGMYAGDRSRK 362

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L EYGFRLPS +DNRPLRFEE+  + P  I VSATPG +EL +  G +VEQ++RPTGL
Sbjct: 363 TILVEYGFRLPSALDNRPLRFEEFETMVPQLISVSATPGDYELRRSGGSVVEQLVRPTGL 422

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP + +R    Q++D+ +EI     +G + L+  LTKRM+EDL +YL +  +R RY+HS
Sbjct: 423 LDPEIVVRPVNGQIDDLLEEIRKHTGKGFKSLVMTLTKRMSEDLHDYLRKAGLRTRYLHS 482

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+K+LER++I+R+LR G+ D+LVG+NLLREGLD+PE  LVAILDADKEGFLR   SL+Q 
Sbjct: 483 EIKSLERMQILRELRTGEIDILVGVNLLREGLDLPEVSLVAILDADKEGFLRDSKSLMQI 542

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
            GRAARNV   V+ YAD IT S++  IDET RRR  Q + N+ H + P S+ + + +V+D
Sbjct: 543 AGRAARNVEGMVVFYADRITASMRYVIDETERRRSVQRKFNEDHGVIPASIVKSVDQVLD 602

Query: 735 PILLEDAAT------------TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
              + DA              +   I+    SL ++   A  + LR +M  AA+++ FE+
Sbjct: 603 TTGVADAEDRFRRRRFGLEQRSRRGIEDLVGSLKREDLYAMAEELRLEMQEAAESMEFEK 662

Query: 783 AARIRDEIKRLKSSPYFQ-----GLDDS 805
           AA +RDE+ +L+ +   +     G+D  
Sbjct: 663 AAYLRDEVTKLEDAAEEKRESEGGMDSG 690


>gi|317012887|gb|ADU83495.1| excinuclease ABC subunit B [Helicobacter pylori Lithuania75]
          Length = 658

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/661 (48%), Positives = 453/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA+
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  +  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++VRYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIRIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|218295874|ref|ZP_03496654.1| excinuclease ABC, B subunit [Thermus aquaticus Y51MC23]
 gi|218243612|gb|EED10140.1| excinuclease ABC, B subunit [Thermus aquaticus Y51MC23]
          Length = 665

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/650 (51%), Positives = 445/650 (68%), Gaps = 11/650 (1%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207
            P GDQP AI +LL+ +   E+   LLG TG+GKT TMAKVIEA+ RPA+V+APNKILAA
Sbjct: 9   EPKGDQPKAIGELLEALRDGERYVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAA 68

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           QL +EF+  FP NAVEYF+SYYDYYQPEAYVP  D YIEK++SIN +I+R+RHS TRSLL
Sbjct: 69  QLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLL 128

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
            R D IVV+SVS IYG+G    Y    + ++ G    ++ LL  L+   Y+R +I +  G
Sbjct: 129 TRRDVIVVASVSAIYGLGDPREYRARNLVVERGMRYPREALLEKLLDLGYERNEIDLSPG 188

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            FRV G+ +E+FP++ E    RV +FG+++E I + +P+TG+++R +    ++  +HY++
Sbjct: 189 RFRVRGEVLEVFPAY-ETEPIRVELFGDEVERILQVHPITGERLRELPGFVLFPATHYLS 247

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
           P        +  KE    R+   E+ G +L AQRL++R  YDLEML   G+C  +ENY+R
Sbjct: 248 PEGLEEILKEIEKELW-ERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYAR 306

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
           Y TG+ PGEPP TL +Y PED L+F+DESHVT+PQ+ GMYRGD+ RK TL +YGFRLPS 
Sbjct: 307 YFTGKAPGEPPFTLLDYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSA 366

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +DNRPLRFEE+       + VSATPG +EL    G +VEQIIRPTGL+DP V ++    Q
Sbjct: 367 LDNRPLRFEEFLEKVSQVVFVSATPGPFELAHS-GRVVEQIIRPTGLLDPLVRVKPTENQ 425

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           V D+ + I   AQ+G R L+TVLT RMAE+LT++L E  IR RY+H E+   ER  +IRD
Sbjct: 426 VLDLMEGIRERAQRGERTLVTVLTVRMAEELTDFLVEHGIRARYLHHELDAFERQALIRD 485

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LRLG FD LVGINLLREGLD+PE  LVAILDADK GFLRS+ SLIQTIGRAARN   +V 
Sbjct: 486 LRLGHFDALVGINLLREGLDLPEVSLVAILDADKTGFLRSERSLIQTIGRAARNARGEVW 545

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           LYAD ++++++ AI ET RRR  Q  +N +H I P++V++ +  VI P    +A      
Sbjct: 546 LYADQVSEAMEKAIRETNRRRAIQEAYNLEHGIVPKTVEKGVRAVIRPEGYGEA------ 599

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
               +L   ++  KA L  L   M  AA+ L+FE AA +RDEI+ L++  
Sbjct: 600 --PFELPSEEEDLKARLAELELLMWQAAEALDFERAAALRDEIRALEARL 647


>gi|119357816|ref|YP_912460.1| excinuclease ABC subunit B [Chlorobium phaeobacteroides DSM 266]
 gi|189037955|sp|A1BI09|UVRB_CHLPD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|119355165|gb|ABL66036.1| Excinuclease ABC subunit B [Chlorobium phaeobacteroides DSM 266]
          Length = 685

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/666 (50%), Positives = 449/666 (67%), Gaps = 14/666 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++ ++Y P GDQP AI  L  G+   ++ Q LLGVTGSGKTFT++ VI  + +P +VM+
Sbjct: 9   YRLVSEYDPKGDQPKAIMALTDGVLRGDRWQTLLGVTGSGKTFTVSNVIAQVDKPVLVMS 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E + FFP NAVEYFVSYYD+YQPEAY+P  D YI K+  IN++I+R+R 
Sbjct: 69  HNKTLAAQLYGELRQFFPDNAVEYFVSYYDFYQPEAYLPALDKYIAKDLRINDEIERLRL 128

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             T SLL  R D IVVSSVSCIYG+GS + +   IV+L+ G   ++   L  LV   Y R
Sbjct: 129 KTTSSLLSGRRDVIVVSSVSCIYGLGSPDDWKAQIVELRSGMEKDRDLFLQELVSLHYIR 188

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+    G FRV GD I++ P+H E++A RV  FG++IE +  F   +G+ +       I
Sbjct: 189 DDVDPGPGKFRVRGDIIDLVPAH-EELALRVEFFGSEIESLQTFNIQSGELLGKDTYAFI 247

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    ++    TL  AM  I+ EL  RL EL ++ RL+EA+RLE+R  YDLEM++  G C
Sbjct: 248 YPARQFIAEAETLKQAMVAIENELAGRLNELRRDDRLVEARRLEERTRYDLEMMKELGYC 307

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L GR+ GE P  L +Y PED L+ VDESHVT+PQI GMY GD  RKA L E
Sbjct: 308 SGIENYSRHLAGRSEGERPYCLLDYFPEDFLVIVDESHVTLPQIRGMYGGDRSRKAILVE 367

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEE+  + P  I VSATPG  ELE+C G++VEQ++RPTGL+DPPV
Sbjct: 368 HGFRLPSALDNRPLRFEEFTEIVPQVICVSATPGDLELERCGGVVVEQLVRPTGLLDPPV 427

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + Q++D+  EI     +G + L+  LTKRM+EDL +Y  +  IR RY+HSE+K+L
Sbjct: 428 EVRPVKGQIDDLLAEIRRHTAKGHKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEIKSL 487

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERI+I+R+LR G  +VLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL+Q  GRAA
Sbjct: 488 ERIQILRELRAGDVEVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 547

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+  V+ YAD +T+SI   +DET RRR  Q  +N+ H I P+S+++ + +V++   + 
Sbjct: 548 RNVDGFVVFYADVLTRSIMEVLDETARRRTVQQLYNETHGITPRSIRKSLDQVLNTTSVA 607

Query: 740 DA------------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           DA            A + +   A   S + ++  A +  LR +M+ AA  + +E+AA +R
Sbjct: 608 DAEERYRRKRFGLGAKSGVQSAALLHSFTPEESYAMVAELRLEMNEAAIQMEYEKAAYLR 667

Query: 788 DEIKRL 793
           DEI RL
Sbjct: 668 DEIARL 673


>gi|210135272|ref|YP_002301711.1| excinuclease ABC subunit B [Helicobacter pylori P12]
 gi|210133240|gb|ACJ08231.1| excinuclease ABC subunit B [Helicobacter pylori P12]
          Length = 658

 Score =  755 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/661 (48%), Positives = 454/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA+
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+ TTG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISTTG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  +  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++VRYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKIHNITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIRIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|229496125|ref|ZP_04389846.1| excinuclease ABC subunit B [Porphyromonas endodontalis ATCC 35406]
 gi|229316956|gb|EEN82868.1| excinuclease ABC subunit B [Porphyromonas endodontalis ATCC 35406]
          Length = 676

 Score =  755 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/668 (49%), Positives = 449/668 (67%), Gaps = 10/668 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI+QL+ G+      Q LLGVTGSGKTFT+A VI    RP ++++
Sbjct: 3   FELTSQYKPTGDQPEAISQLVAGLKQNIPAQTLLGVTGSGKTFTIANVIAQANRPTLIVS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFPHNAVEYFVSYYDYYQPEAY+  TDTYIEK+ +IN +I++MR 
Sbjct: 63  HNKTLAAQLYSEFKAFFPHNAVEYFVSYYDYYQPEAYLATTDTYIEKDMAINAEIEKMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             T SLL  R D IVVSSVSC+YG+     +S  I+ LK G +  +  L+  L    Y  
Sbjct: 123 RTTASLLSGRRDVIVVSSVSCLYGMADPHVFSDCIITLKRGMTYPRSRLMRDLAASYYIN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
             +    G+FRV GD+I+IFP+    + VA+RV  + ++I+ +S  +P++G     ++ +
Sbjct: 183 NKVDFTSGSFRVNGDTIDIFPAIEGYDGVAYRVEYWDDEIDSLSVIHPVSGTIQGELDNL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + +VT +     A++ IK++L +R+ ELE   +  EA RL++R+ YD+EM+   G
Sbjct: 243 SIYPANLFVTTKEQTKQAIEEIKKDLALRVAELESMEKHYEATRLQERVKYDVEMISEIG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR+ G  P  L +Y P+D LL VDESHVTIPQ+  MY GD  RK +L
Sbjct: 303 YCTGIENYSRYFDGRSAGARPFCLLDYFPQDFLLVVDESHVTIPQVRAMYGGDKARKTSL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLP+ +DNRPL F+E+  L P+TI +SATP  +ELE+ +G+I+EQIIRPTGL DP
Sbjct: 363 VDYGFRLPAALDNRPLTFDEFRELTPSTIYISATPAEYELEESEGVIIEQIIRPTGLPDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    QV+D+ +EI    ++  R+L+T LTKRMAE+L+EYL    I   Y+HS+V 
Sbjct: 423 IIEVRPTEHQVDDLMEEIQQRRERHQRVLVTTLTKRMAEELSEYLQRAGIATAYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERI I+ +LR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GR
Sbjct: 483 TLERIRILDELRKGVFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AAR+V  KV+ YAD +T+S+Q  IDET  RRE+QL +NK +NI P+ V +  + ++    
Sbjct: 543 AARHVEGKVLFYADKVTESMQQTIDETADRRERQLAYNKANNITPRQVVKSGISLVSGGD 602

Query: 738 LEDA-------ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           L           ++  + D     LS  + ++ L S RK+M+ AA  L+F EAAR+RDE 
Sbjct: 603 LPSTLPAQAYIESSIPTKDPMVEYLSASQLRSLLDSTRKKMYEAAKALDFSEAARLRDEA 662

Query: 791 KRLKSSPY 798
             L++   
Sbjct: 663 NDLETKLL 670


>gi|225630549|ref|YP_002727340.1| excinuclease ABC, subunit B [Wolbachia sp. wRi]
 gi|225592530|gb|ACN95549.1| excinuclease ABC, subunit B [Wolbachia sp. wRi]
          Length = 637

 Score =  755 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/653 (55%), Positives = 466/653 (71%), Gaps = 21/653 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI  L+ G++S ++ Q+LLGVTGSGKTFTMA VI    RPA++MA
Sbjct: 3   FQIATHFQPAGDQPQAIDSLIAGLNSNKRDQVLLGVTGSGKTFTMANVIARTNRPALIMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K  FPHNAVEYF+SYYDYYQPEAY+P+TDTYIEK+S+INE+I+ +R+
Sbjct: 63  HNKTLAAQLYEEMKGLFPHNAVEYFISYYDYYQPEAYLPQTDTYIEKDSAINERIEMLRY 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S   SLLER D IVV+SVSCIYG+GS ESY  MI+ L +G+ +   + LS+L   QYKR 
Sbjct: 123 STVCSLLERRDTIVVASVSCIYGLGSPESYRSMIIPLSVGNKIRINDFLSNLTDLQYKRS 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD ++IF SH E+ AWR+S+FG++IEEISE   +TG   + V  I I+
Sbjct: 183 DARFERGYFRVRGDIVDIFLSHYENKAWRLSLFGDEIEEISEVDAITGNVTKGVNKITIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NS+Y+TPR  L  A++ +K+EL  RL     + +++EA+RLEQR  +D+EM+ TTG C+
Sbjct: 243 PNSYYITPREALLQAIELVKKELHERLDYYYSQNKIVEAKRLEQRTNFDIEMMRTTGICK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL G   G+PPPTLFEY+P+D +LFVDESHVT+PQ+  MY G+  RK  L +Y
Sbjct: 303 GIENYSRYLYGMEAGDPPPTLFEYLPKDVILFVDESHVTVPQVGAMYSGNEARKKKLIDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEEW  +RP T+ +SATPG +EL +   + +EQ+IRPTGL DP   
Sbjct: 363 GFRLPSAFDNRPLKFEEWEGVRPQTVYISATPGKYELAKTNNVFIEQVIRPTGLTDPICI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++   +Q++DV  E  +   +G  +L+T LTK+MAE+L EY+ E N++V Y+HS++  LE
Sbjct: 423 VKPIESQIDDVIHEAQVTIGKGFCVLITTLTKKMAENLAEYMSELNMKVSYLHSDIAALE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII  LR  + DVLVG+NLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RIEIIYKLRSKEIDVLVGVNLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   +VILYAD IT S+  A+ ET RRR+KQ EHN  HN                 ++  
Sbjct: 543 NAEGRVILYADKITGSLDRALRETERRRKKQEEHNILHN-----------------IIPK 585

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                IS   Q+ ++++ K   +   LRKQM   A+NL FEEAAR    IK+L
Sbjct: 586 TIIKPISNTLQERAIAEPKVNTNKDDLRKQMIEHAENLEFEEAAR----IKKL 634


>gi|15791178|ref|NP_281002.1| excinuclease ABC subunit B [Halobacterium sp. NRC-1]
 gi|169236934|ref|YP_001690134.1| excinuclease ABC subunit B [Halobacterium salinarum R1]
 gi|22257071|sp|Q9HMT9|UVRB_HALSA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|10581796|gb|AAG20482.1| excision nuclease chain B [Halobacterium sp. NRC-1]
 gi|167728000|emb|CAP14788.1| excinuclease ABC subunit B [Halobacterium salinarum R1]
          Length = 689

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/682 (47%), Positives = 448/682 (65%), Gaps = 8/682 (1%)

Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181
           +         +    D+  F+++  + P+GDQP AIA+L+ G     + Q LLGVTGSGK
Sbjct: 1   MSDASGPLQPDRPEADV-PFRVEAPFDPAGDQPDAIAELVAGYEQGAQQQTLLGVTGSGK 59

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
           T T++ V+E +Q+P +V+A NK LAAQLY EF++ FP NAVEYFVSYY+YYQPEAYV +T
Sbjct: 60  TNTVSWVVEELQQPTLVIAHNKTLAAQLYEEFRSLFPDNAVEYFVSYYNYYQPEAYVEQT 119

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           D YIEK++SIN++IDR+RHSATRSLL R+D IVV+SVS IYG+G   +Y +M ++++ G 
Sbjct: 120 DKYIEKDASINDEIDRLRHSATRSLLTRDDVIVVASVSAIYGLGDPRNYEEMSLRVERGQ 179

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
           S+ + +LL+ LV   Y R D+   +GTFRV GD++E++P +      RV  +G++I+ ++
Sbjct: 180 SIGRDQLLAKLVDLNYDRNDVDFTQGTFRVRGDTVEVYPMYG-RYPVRVEFWGDEIDRMA 238

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
           +  PL G        +  +   HY  P   +  A++ I+ ++  R+   E+ G ++ AQR
Sbjct: 239 KLDPLEGTVESEEPAVLFHPAEHYSVPDAEMEQAIERIRTDMHERVRHFERTGDMVAAQR 298

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
           +E+R T+DLEM+   G C  IENYS YL+ R  G+ P TL +Y P+D L  +DESH T+P
Sbjct: 299 IEERTTFDLEMMAEAGYCSGIENYSVYLSDREVGDAPYTLLDYFPDDFLTVIDESHRTVP 358

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           QI G Y GD  RK +L + GFRLP+  DNRPL F E+      T+ VSATPG  E  Q  
Sbjct: 359 QIKGQYEGDKSRKDSLVDNGFRLPTAYDNRPLTFAEFADKTDRTLYVSATPGDHERAQSA 418

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
             +VEQI+RPT LVDP + I  A  QVED+ D I+    +  R+L+T LTKRMAEDLTEY
Sbjct: 419 N-VVEQIVRPTHLVDPDISIADATGQVEDLMDRIDERVARDERVLVTTLTKRMAEDLTEY 477

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L E  + V YMH E  TLER E++R LRLG++DVLVGINLLREGLDIPE  LVAILDAD+
Sbjct: 478 LEEAGVAVEYMHDETDTLERHELVRGLRLGEYDVLVGINLLREGLDIPEVSLVAILDADQ 537

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN 721
           +GFLRS+TSL+QT+GRAARNVN +V+LYAD  T ++Q AIDET RRR  Q   N+ H   
Sbjct: 538 QGFLRSETSLVQTMGRAARNVNGEVVLYADETTDAMQAAIDETQRRRRIQRAFNEDHGTT 597

Query: 722 PQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
           P ++++ + ++  P      A T+ +  A      +++    ++ L  +M  AA NL FE
Sbjct: 598 PTTIEKAVGDMNLP-----GAETDTADVAGDAPSDEQEAALLVEDLEARMEDAASNLEFE 652

Query: 782 EAARIRDEIKRLKSSPYFQGLD 803
            AA IRD ++ L+ +    G D
Sbjct: 653 LAADIRDRMRELREAFDLDGGD 674


>gi|317182367|dbj|BAJ60151.1| excinuclease ABC subunit B [Helicobacter pylori F57]
          Length = 658

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/661 (48%), Positives = 452/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I  + +P +
Sbjct: 1   MPLFDLKSPYPPAGDQPKAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP + +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPVYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  Q  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V      V++
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKLHNITPKTVTR----VLE 596

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L        I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 597 EELKLRDDEIKIAKALKKDKVPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|258648590|ref|ZP_05736059.1| excinuclease ABC subunit B [Prevotella tannerae ATCC 51259]
 gi|260851372|gb|EEX71241.1| excinuclease ABC subunit B [Prevotella tannerae ATCC 51259]
          Length = 677

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/673 (47%), Positives = 471/673 (69%), Gaps = 15/673 (2%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ ++Y P+GDQP AI  L  G  +    Q+LLGVTGSGKTFT+A VI+ + +P +
Sbjct: 1   MSAFKLHSEYQPTGDQPEAIEALTTGAKAGTPAQVLLGVTGSGKTFTIANVIKNLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY+EFK+FFP NAVEY+VSYYDYYQPEAY+P +D YIEK+ +INE+IDR
Sbjct: 61  VLSHNKTLAAQLYTEFKDFFPENAVEYYVSYYDYYQPEAYIPSSDLYIEKDMAINEEIDR 120

Query: 258 MRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +R +AT +LL  R D IVVSSVSCIYG+G+  ++ + ++ LK+G S+   +LL  L+   
Sbjct: 121 LRLAATSALLSGRKDVIVVSSVSCIYGMGNPAAFYENVIDLKVGSSIGVTQLLQKLIASL 180

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D+    G FRV GD+++I+ ++ E++  RV+ +G+D++ I E   L+G +    E 
Sbjct: 181 YTRNDVAPKSGNFRVNGDTVDIYLAYTEEI-IRVTFWGDDVDTIEEIDALSGYRTATFEE 239

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
            K+Y  + ++T + T   A++ I+++L  ++ + E+EG++LEA+RL +R++YD+EM+   
Sbjct: 240 YKVYPANLFLTSKETQELAIRSIQDDLVEQVQKFEEEGKMLEAKRLSERVSYDIEMIREL 299

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYSRY  GR+PG  P  L ++ PED L+ +DESHVT+PQI  M+ GD HRK  
Sbjct: 300 GHCSGIENYSRYFDGRSPGTRPYCLLDFFPEDFLIVIDESHVTVPQIRAMWGGDRHRKVN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  YGFRLP+ +DNRPL F+E++ +    I +SATP  +EL++ +G+IVEQIIRPTGL+D
Sbjct: 360 LVNYGFRLPAALDNRPLTFDEFHQMAKQVIYISATPDDYELQESEGVIVEQIIRPTGLLD 419

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           PP+E+R     ++D+ +EI    ++  R+L+T LTK+M+E+LT+YL +  I+  Y+HS++
Sbjct: 420 PPIEVRPNDYPIDDLMEEIRQCIEREERVLVTTLTKKMSEELTDYLLKNGIKTAYIHSDI 479

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER+ I+ DLR G +DVLVG+NLLREGLD+PE  LVAILDADKEGFLRS  S+ QT G
Sbjct: 480 DTLERVRIMEDLRKGTYDVLVGVNLLREGLDLPEVALVAILDADKEGFLRSTRSMTQTAG 539

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM-----E 731
           RAARNVN +VI+YA+ IT S+Q  IDET RRR KQ+ +N++H++ P+ +K+KI      E
Sbjct: 540 RAARNVNGRVIMYANRITTSMQQTIDETNRRRAKQIAYNEQHHLKPRQIKKKIKTNQLTE 599

Query: 732 VIDPILLEDAATTN--------ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
           + +    E + TT          + + Q +   K+  +     L KQM  AA++L+F  A
Sbjct: 600 LSEARQSEKSTTTYDLRQTSTPKAAEDQAVYGKKETYEERHARLEKQMKAAAEHLDFVLA 659

Query: 784 ARIRDEIKRLKSS 796
           A++RDE+  ++  
Sbjct: 660 AQLRDELLAIEKE 672


>gi|19703569|ref|NP_603131.1| excinuclease ABC subunit B [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|22257069|sp|Q8RGR2|UVRB_FUSNN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|19713669|gb|AAL94430.1| Excinuclease ABC subunit B [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 663

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/655 (52%), Positives = 477/655 (72%), Gaps = 4/655 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F++ +DY P+GDQP AI  ++K I +  K Q+LLGVTGSGKTFT+A VIE +QRP+
Sbjct: 2   ENNLFKIHSDYKPTGDQPTAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPS 61

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID
Sbjct: 62  LIIAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEID 121

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     + +KEL+  L+  +
Sbjct: 122 KLRNAATAALIHRRDVIIVASVSSIYGLGSPDTYRRMTIPIDKQTGISRKELMKRLIALR 181

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VE 375
           Y R D+   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQK++  +E
Sbjct: 182 YDRNDVAFERGQFRIKGDVIDIYPSYMNN-GYRLEYWGDDLEEISEINTLTGQKVKKNLE 240

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I IY  + Y+T     +  ++ IK++LK+ + + E + +LLEAQRL QR  YDLEM+  
Sbjct: 241 RIVIYPATQYLTADDDKDRIIQEIKDDLKVEVKKFEDDKKLLEAQRLRQRTEYDLEMITE 300

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C+ IENYSRYL G+NPG+ P TLFEY P+D LLF+DESH+T+PQ+ GMY GD  RK 
Sbjct: 301 IGYCKGIENYSRYLAGKNPGDTPDTLFEYFPKDFLLFIDESHITVPQVRGMYNGDRARKE 360

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           +L E GFRL + +DNRPLRFEE+      T+ +SATPG +E+E     I EQ+IRPTG+V
Sbjct: 361 SLVENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNHIAEQLIRPTGIV 420

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR  + QV+D+ DEI   A +  R+L+T LTK++AE+LTEY  E  ++V+YMHS+
Sbjct: 421 DPEIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSD 480

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTI
Sbjct: 481 IDTLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTI 540

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  ++I+P+S+ ++I E  D 
Sbjct: 541 GRAARNVEGRVILYADIMTDSMKEAITETERRRKIQKEYNAYNHIDPKSIIKEIAE--DL 598

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           I L+         + +++  +K   +  +  L K++    + L+FE+A  +RDE+
Sbjct: 599 INLDYGIEEKKFENDKKVFRNKTDIEKEITKLEKKIKKLVEELDFEQAIILRDEM 653


>gi|297380290|gb|ADI35177.1| excinuclease ABC, B subunit [Helicobacter pylori v225d]
          Length = 663

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/661 (47%), Positives = 451/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I  + +P +
Sbjct: 6   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTL 65

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 66  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 125

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 126 LRLSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 185

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 186 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSV 245

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 246 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 305

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 306 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 365

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  Q  + EQIIRPTGL
Sbjct: 366 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGL 425

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMHS
Sbjct: 426 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS 485

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 486 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 545

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK H+I P++V   + E + 
Sbjct: 546 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEELK 605

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 606 L----RDDEVKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLR 661

Query: 795 S 795
           +
Sbjct: 662 T 662


>gi|317009722|gb|ADU80302.1| excinuclease ABC subunit B [Helicobacter pylori India7]
          Length = 658

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/661 (48%), Positives = 451/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA+
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRAIGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  +  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA   T+S+Q A + T+ RR KQ E NK HNI P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKTTQSMQKAFEITSYRRAKQEEFNKLHNITPKTVTRTLEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|313124979|ref|YP_004035243.1| excinuclease ABC subunit b [Halogeometricum borinquense DSM 11551]
 gi|312291344|gb|ADQ65804.1| Excinuclease ABC subunit B [Halogeometricum borinquense DSM 11551]
          Length = 704

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/653 (50%), Positives = 442/653 (67%), Gaps = 7/653 (1%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
            +H +    F++   + P+GDQP AI QL +G  +  + Q LLGVTGSGKT T+A  +E 
Sbjct: 13  PDHPEVDRDFRVDAPFDPAGDQPEAIEQLARGFEAGMEKQTLLGVTGSGKTNTVAWTVEE 72

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +Q+P +V+A NK LAAQLY EFKN FP NAVEYFVSYYDYYQPEAY+ +TDTYI+K+ SI
Sbjct: 73  IQKPTLVIAHNKTLAAQLYEEFKNLFPDNAVEYFVSYYDYYQPEAYIEQTDTYIDKDMSI 132

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           NE+IDR+RHSATRSLL R+D IVV+SVS IYG+G   +Y+ M ++L++GD +++ +LL  
Sbjct: 133 NEEIDRLRHSATRSLLTRDDVIVVASVSAIYGLGDPANYTDMSLRLEVGDRMDRDDLLRR 192

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV   Y+R D+   +GTFRV GD++E+FP +    A R+  +G++I+ + +  PL G   
Sbjct: 193 LVDLNYERNDVDFQQGTFRVRGDTVEVFPMYG-RYAVRIEFWGDEIDRMQKLDPLQGAVK 251

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
                + I+   HY  P   L  A+  I+E ++ R+   E++G L+ AQR+E+R T+D+E
Sbjct: 252 STEPAVLIHPAEHYSIPEDQLEQAISEIEELMEERVRYFERQGDLVAAQRIEERTTFDIE 311

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           ML+ TG C  IENYS +++ R  G+ P TL +Y P+D L  +DESH T+PQI G + GD 
Sbjct: 312 MLQETGYCSGIENYSVHMSNRESGDAPYTLLDYFPDDFLTVIDESHQTLPQIRGQFAGDK 371

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK +L E GFRLP+  DNRPL FEE+      T+ VSATPG +E E  +  I EQI+RP
Sbjct: 372 ARKDSLVENGFRLPTAYDNRPLTFEEFEEKTDQTLYVSATPGDYEREHSEQ-IAEQIVRP 430

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           T LVDP VE+  A  QV+D+ D I+   ++  R L+T LTKRMAEDLTEYL E  + V Y
Sbjct: 431 THLVDPKVELADATGQVDDLLDRIDTRIERDERTLVTTLTKRMAEDLTEYLEEAGVDVAY 490

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH E  TLER E+IRDLRLG  DVLVGINLLREGLDIPE  LVAILDAD+EGFLRS T+L
Sbjct: 491 MHDETDTLERHELIRDLRLGHIDVLVGINLLREGLDIPEVSLVAILDADQEGFLRSTTTL 550

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQT+GRAARNVN +VILYAD  T S++ AI+ET RRR  Q   N++H   P ++ + + E
Sbjct: 551 IQTMGRAARNVNGEVILYADETTDSMEAAIEETQRRRAIQQAFNEEHGYEPTTIDKAVGE 610

Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
              P      + T+ +  A +    +   +  ++ L  +M  AADNL FE AA
Sbjct: 611 TNLP-----GSETSATRSASEQPTDEDDAREQIEYLEDRMQEAADNLEFELAA 658


>gi|317177865|dbj|BAJ55654.1| excinuclease ABC subunit B [Helicobacter pylori F16]
          Length = 658

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/661 (47%), Positives = 452/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I  + +P +
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAKINKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSAVTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  +  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++VRYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK H+I P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|311742591|ref|ZP_07716400.1| excision endonuclease subunit UvrB [Aeromicrobium marinum DSM
           15272]
 gi|311314219|gb|EFQ84127.1| excision endonuclease subunit UvrB [Aeromicrobium marinum DSM
           15272]
          Length = 694

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/686 (50%), Positives = 474/686 (69%), Gaps = 18/686 (2%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
             ++   + +   ++ +DY P+GDQPAAIA+L + I    +  +LLG TG+GKT T A +
Sbjct: 2   RPVSELQRQVAPIEVVSDYRPAGDQPAAIAELSRRIAEGAQDTVLLGATGTGKTATTAWL 61

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
            E +QRP +VM PNK+LAAQ  +E +   P+NAVEYFVSYYDYYQPEAY+ ++DTYIEK+
Sbjct: 62  AEQIQRPMLVMMPNKLLAAQFANELRELLPNNAVEYFVSYYDYYQPEAYIAQSDTYIEKD 121

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+NE+++R+RHSAT SLL R D IVV++VSCIYG+GS + Y + ++  K+G+ + ++ L
Sbjct: 122 SSVNEEVERLRHSATWSLLTRRDVIVVATVSCIYGLGSAQEYLERMIGFKVGEEMPRERL 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L +LV+ QY R D+   RGTFRV GD++EIFP + E  A RV  FG++IE +   +PLTG
Sbjct: 182 LRTLVEAQYVRNDVATTRGTFRVKGDTVEIFPVYQE-HAVRVEFFGDEIERLMTLHPLTG 240

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + + +   + + + +HY     T+  AM  I+ EL+ RL ELE  G+LLEAQRL  R TY
Sbjct: 241 EVLSDDTELYVGSATHYAAGPQTMQRAMGTIRLELEERLAELEGAGKLLEAQRLRMRTTY 300

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEM+E  G+C  IENYSR++  R PG P   L +Y P+D +L VDESHVTIPQI  MY 
Sbjct: 301 DLEMMEQVGTCAGIENYSRHMDQRGPGTPGHCLLDYFPDDFVLVVDESHVTIPQIGAMYE 360

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK +L E+GFRLPS MDNRPL+++E+      T+ +SATPGS+E+ +  G +VEQI
Sbjct: 361 GDMSRKRSLVEHGFRLPSAMDNRPLKWDEFLDRIGQTVYLSATPGSYEMGRTGGDVVEQI 420

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGL+DP V ++    Q++D+  +I    ++  R+L+T LTK+M+EDLT+YL E  IR
Sbjct: 421 IRPTGLIDPEVVVKPTSGQIDDLIGQIRERTERDERVLVTTLTKKMSEDLTDYLLEAGIR 480

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            RY+HSEV TL R+E++R+LR+G++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS 
Sbjct: 481 TRYLHSEVDTLRRVELLRELRMGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSG 540

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARNV+ +VI+YAD IT S+  AIDET RRREKQ+ +N +  ++PQ ++++
Sbjct: 541 RSLIQTIGRAARNVSGQVIMYADRITDSMAQAIDETNRRREKQIAYNLEKGVDPQPLRKR 600

Query: 729 IMEVIDPILLEDAATTNI-----------------SIDAQQLSLSKKKGKAHLKSLRKQM 771
           I ++ D +  EDA T  +                    A +  L   +    ++ L +QM
Sbjct: 601 IGDITDMLAREDADTETLLAATGDKRRRGAPVPLGEPSADRGGLPSGELAQLIEQLSEQM 660

Query: 772 HLAADNLNFEEAARIRDEIKRLKSSP 797
             AA  L FE AARIRDE+  LK   
Sbjct: 661 RAAAAELQFEVAARIRDEVSDLKKEL 686


>gi|237740540|ref|ZP_04571021.1| excinuclease ABC subunit B [Fusobacterium sp. 2_1_31]
 gi|229422557|gb|EEO37604.1| excinuclease ABC subunit B [Fusobacterium sp. 2_1_31]
          Length = 663

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/653 (52%), Positives = 472/653 (72%), Gaps = 4/653 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F++ ++Y P GDQP AI  ++K I    K Q+LLGVTGSGKTFT+A VIE +QRPA
Sbjct: 2   ENNLFKIHSEYKPMGDQPTAIESIVKNIERGVKDQVLLGVTGSGKTFTIANVIERLQRPA 61

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID
Sbjct: 62  LIIAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEID 121

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     +++KEL+  L+  +
Sbjct: 122 KLRNAATAALIHRRDVIIVASVSSIYGLGSPDTYRKMTIPIDKQTGIQRKELMKKLIALR 181

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VE 375
           Y+R DI   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQKI+  +E
Sbjct: 182 YERNDIAFERGKFRIKGDVIDIYPSYMNN-GYRLEYWGDDLEEISEINTLTGQKIKKNLE 240

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I IY  + Y+T     +  ++ IK++L++ +   E E +LLEAQRL QR  YDLEM+  
Sbjct: 241 RIVIYPATQYLTADDDKDRIIEEIKDDLRVEVKSFEDEKKLLEAQRLRQRTEYDLEMINE 300

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C+ IENYSRYL+G+ PGE P TLFEY P+D LLF+DESH+T+PQ+ GMY GD  RK 
Sbjct: 301 IGYCKGIENYSRYLSGKRPGETPDTLFEYFPKDFLLFIDESHITVPQVRGMYNGDRARKE 360

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L E GFRL + +DNRPL+FEE+      T+ +SATPG +E+E     I EQ+IRPTG+V
Sbjct: 361 ALVENGFRLKAALDNRPLKFEEFREKSNQTVFISATPGDFEIEVSDNNIAEQLIRPTGIV 420

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR  + QV+D+ DEI     +  R+L+T LTK++AE+LTEY  E  ++V+YMHS+
Sbjct: 421 DPEIEIRPTKNQVDDLLDEIRKRVAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSD 480

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTI
Sbjct: 481 IDTLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTI 540

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  +NI+P+S+ ++I E  D 
Sbjct: 541 GRAARNVEGRVILYADIMTDSMKEAIIETERRRKIQKEYNAYNNIDPKSIVKEIAE--DL 598

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           I L+         + +++  SK   +  +  L K++    + L+FE+A  +RD
Sbjct: 599 INLDYGIEDKKFENDKKVFRSKADIEKEITKLEKKIKKLVEELDFEQAIVLRD 651


>gi|237750187|ref|ZP_04580667.1| excinuclease ABC subunit B [Helicobacter bilis ATCC 43879]
 gi|229374081|gb|EEO24472.1| excinuclease ABC subunit B [Helicobacter bilis ATCC 43879]
          Length = 660

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/660 (49%), Positives = 460/660 (69%), Gaps = 7/660 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + ++Y P+GDQP AI  L K I++ EK   L+GVTGSGKTF+MA +I+ +  P ++
Sbjct: 4   NLFNLTSNYKPAGDQPQAINFLCKQINNNEKYNTLIGVTGSGKTFSMANIIQNLNMPTLI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           M+ NK L AQLYSEFK+FFPHN VEYF+S++DYYQPEAY+PR D +IEK+SSIN++++R+
Sbjct: 64  MSHNKTLCAQLYSEFKSFFPHNHVEYFISHFDYYQPEAYIPRRDLFIEKDSSINDELERL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT SLL  +D IV++SVS  YG+G+   Y  MI +L++  + +QK LL+ LV+  Y 
Sbjct: 124 RLSATTSLLAYDDVIVIASVSANYGLGNPSEYLTMIEKLEVSKTYQQKRLLTKLVEMGYT 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +    RG+FRV G+ ++IFP++ E    R+  FG++IE I+    L    ++ +++  
Sbjct: 184 RNETSFERGSFRVKGEVVDIFPAYNEVEFIRIEFFGDEIERIAVLESLDNTLVKELDSYV 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +YA + ++     L  A+  I++EL+ RL   E E R+LE +RL+ R  +DLEM++  G 
Sbjct: 244 LYAANQFIVGENRLKNAIVEIEQELQERLKFYESENRMLEYERLKSRTEFDLEMIKENGI 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKA 495
           C+ IENY+R+LTG+ PGE P +L +Y     +  LL VDESHV++PQ  GMY GD  RK 
Sbjct: 304 CKGIENYARHLTGKKPGETPFSLLDYFEYKKKPYLLIVDESHVSLPQFGGMYAGDRSRKE 363

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L EYGFRLPS +DNRPL+F+E+   +   + VSATP   EL   +  + EQ+IRPTGL+
Sbjct: 364 VLVEYGFRLPSALDNRPLQFDEFINKKANFLFVSATPAELELSLSKDNVCEQLIRPTGLL 423

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP  E+R +R QV+D+ +EI +  ++  R+L+T LTK+M+E+L +Y  +  I++ Y+HSE
Sbjct: 424 DPEFEVRDSRIQVKDLLEEIKVCVERKERVLITTLTKKMSEELAKYYAKEGIKIEYLHSE 483

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +  +ER  +IR+LRLG FDVLVGINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT+
Sbjct: 484 IDAIERNHLIRNLRLGVFDVLVGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTM 543

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNVN KVILYA+ ITKS++ A+D TT RR+KQ E NKKH I P SV   + E +  
Sbjct: 544 GRAARNVNGKVILYAEKITKSMRKAMDTTTYRRKKQEEFNKKHGIIPTSVSRNVEEELR- 602

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             LED+      + +++  +  K+ +  +K L+ +M  A+  L+FE A ++RDEI RL+S
Sbjct: 603 --LEDSTKVYDKM-SKKNKIPAKEKENLIKDLKIKMLEASKRLDFEAAIQLRDEIARLRS 659


>gi|188527894|ref|YP_001910581.1| excinuclease ABC subunit B [Helicobacter pylori Shi470]
 gi|188144134|gb|ACD48551.1| excinuclease ABC subunit B [Helicobacter pylori Shi470]
          Length = 658

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/661 (47%), Positives = 449/661 (67%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +P +
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANTNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKCLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYTGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  Q  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK H+I P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA  +RDEI +L+
Sbjct: 601 L----RDDEVKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMHLRDEIAKLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|255961258|ref|YP_003097816.1| DNA excision repair helicase [Onion yellows phytoplasma OY-M]
 gi|294862472|sp|Q6YQE1|UVRB_ONYPE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|162809328|dbj|BAF95573.1| helicase subunit of the DNA excision repair [Onion yellows
           phytoplasma OY-M]
          Length = 670

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/667 (48%), Positives = 451/667 (67%), Gaps = 6/667 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++Q+   PSGDQP AI +L+       + Q+LLG TG+GKTFT+A +I+ +Q+  +V
Sbjct: 5   NLFKLQSSLKPSGDQPQAIQKLVNNFKQGLQEQILLGATGTGKTFTIANIIQHLQQKTLV 64

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LA QLY+E K  FP+N VEYF+SYYDYYQPEAYV  +DTYIEK+S IN++ID++
Sbjct: 65  IAHNKTLAGQLYNELKAMFPNNRVEYFISYYDYYQPEAYVASSDTYIEKDSKINDEIDQL 124

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSA  SLL R+D IVV+SVSCIYG+G ++ Y +  + L+IGD  E++ L++ L++ +Y+
Sbjct: 125 RHSAAGSLLNRDDVIVVASVSCIYGVGDLKDYQKSTLHLQIGDKYERQALINKLIELKYQ 184

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +I   RGTFRV GD IEI  S  +++  R+  FGN+IE I  F  L G+ I N++ I 
Sbjct: 185 RNEINFQRGTFRVRGDIIEIIASSSKEIGIRIIFFGNEIENIQNFDVLNGKAITNLKLIT 244

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++  S Y T    L   +K I++ELK ++   EK  +LL AQ+++ R  +DLEMLE  G+
Sbjct: 245 LFPASLYATNTQKLQEGIKRIRQELKEQINHFEKTNQLLAAQKIKMRTLHDLEMLEQIGN 304

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  +ENYSR+L  +  GE P TL ++   + L  +DESHVTIPQI GMY GDF RK  L 
Sbjct: 305 CNGVENYSRHLALKEKGEAPSTLIDFFGNEFLTIIDESHVTIPQIKGMYFGDFSRKTNLV 364

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            +GFRLPS +DNRPL+F E+       I +SATPG++EL + +  IVEQIIRPT ++DP 
Sbjct: 365 NFGFRLPSALDNRPLKFHEFQAKMNKVIYLSATPGNYELTK-KIPIVEQIIRPTFVLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +EIR    Q++D+Y EI    +   RIL+T LT  M+EDLT YL    I+V Y+HSE+K+
Sbjct: 424 IEIRPTHNQMDDLYFEIKHQTKNNQRILITTLTINMSEDLTAYLKNLCIKVAYLHSEIKS 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L+R+EI++DLRLGK+D LVG+NLLREGLD+PE  LVAILDADK+GFLR++ SLIQTIGRA
Sbjct: 484 LQRLEILKDLRLGKYDCLVGVNLLREGLDLPEVALVAILDADKQGFLRNERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  K I+YAD I+ ++Q+AI+ET RRR+ Q ++N+   + P ++ + I+E I     
Sbjct: 544 ARNITGKAIMYADCISPAMQIAIEETYRRRKIQQQYNETMKVTPTALNKTILETISIKQK 603

Query: 739 EDAATTNISIDAQQLSL-----SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           E A   N +   +         +       +K L+K M  AA  L+FE+AA +RD I  L
Sbjct: 604 ESAQNENENGKVKGQKKLQTHTNITAKNKEIKRLQKMMKEAAKTLDFEKAATLRDLILEL 663

Query: 794 KSSPYFQ 800
           +     +
Sbjct: 664 EKKGKLK 670


>gi|332673914|gb|AEE70731.1| excision endonuclease subunit UvrB [Helicobacter pylori 83]
          Length = 663

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/661 (47%), Positives = 451/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I  + +P +
Sbjct: 6   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTL 65

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 66  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 125

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 126 LRLSAAISLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 185

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 186 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV 245

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 246 MLYAASQFAVGSERLNLAIKSIEDELTLRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 305

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 306 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 365

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  +  + EQIIRPTGL
Sbjct: 366 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKNNVAEQIIRPTGL 425

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMHS
Sbjct: 426 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS 485

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 486 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 545

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK H+I P++V   + E + 
Sbjct: 546 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEELK 605

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 606 L----RDDEVKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLR 661

Query: 795 S 795
           +
Sbjct: 662 T 662


>gi|118475355|ref|YP_892046.1| excinuclease ABC subunit B [Campylobacter fetus subsp. fetus 82-40]
 gi|189037953|sp|A0RPB3|UVRB_CAMFF RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|118414581|gb|ABK83001.1| excinuclease ABC, B subunit [Campylobacter fetus subsp. fetus
           82-40]
          Length = 658

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/661 (49%), Positives = 454/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + PS DQ  A+  ++  I S  K  +LLGVTGSGKTFTMA VI+ +  P +
Sbjct: 1   MDKFEISSKFKPSDDQEKAVTNIVDSIRSGNKFNVLLGVTGSGKTFTMANVIKRLNMPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M  NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SSINE+++R
Sbjct: 61  IMTHNKSLAAQLYSEFKGFFPKNHVEYFISYYDYYQPEAYIPRQDLFIEKDSSINEELER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT +LLE +D +VV+SVS  YG+G+   Y  M++ L +G S+ QKELL  LV   Y
Sbjct: 121 LRLSATANLLEFDDVVVVASVSANYGLGNPAEYKGMVLLLSLGMSLNQKELLLKLVDMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR D    RG FRV GD ++I+P++  D A R+  FG++++ +  F  L  ++ ++V   
Sbjct: 181 KRNDAYFDRGDFRVNGDVVDIYPAYFNDEAIRLEFFGDELDAMYHFDVLENKRTKDVSKF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S ++     L  A+K I+ EL+ RL   EKE RL+E QRL+QR+ +DLEML +TG
Sbjct: 241 ILYATSQFIVGENRLKQAIKDIELELEDRLAFYEKENRLVEYQRLKQRVEFDLEMLSSTG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494
           S + +ENY+RYLTG+  GE P +LF+Y     +D L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 STKGVENYARYLTGQKAGETPYSLFDYFEVSGKDYLVIVDESHVSLPQFRGMYAGDRSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L EYGFRLPS +DNRPL+ +E+   +   + VSATP  +E++  QG + EQI+RPTGL
Sbjct: 361 EVLVEYGFRLPSALDNRPLKLDEFIAKKANYLFVSATPNQYEIDLSQGHVYEQILRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+ S+  QVE ++D       +G R+L+T LTK+M+E+LT Y  E  I+V+YMHS
Sbjct: 421 LDPRIEVISSDNQVEVLFDRAKAVIARGERVLVTTLTKKMSEELTRYYQELGIKVKYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER E+IR LR G+FD+LVGINLLREGLD+PE  LVA+LDADKEGFLRS+TSLIQT
Sbjct: 481 DIDAVERNELIRGLRKGEFDMLVGINLLREGLDLPEVSLVAVLDADKEGFLRSRTSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNVN  VIL+A+ IT S++ AID T  RR+ Q ++NKK+ I P+S    + + + 
Sbjct: 541 MGRAARNVNGTVILFANKITNSMKEAIDTTEARRKYQGDYNKKYGITPRSASRNLEDSLK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              L +       ++     +   +    +K LRKQM  AA NL FE+AA +RDEI +L+
Sbjct: 601 EEDLPNLYNKAKKLE----KMPASERAKIVKELRKQMLEAAKNLEFEKAAALRDEIAKLR 656

Query: 795 S 795
            
Sbjct: 657 E 657


>gi|308063898|gb|ADO05785.1| excinuclease ABC subunit B [Helicobacter pylori Sat464]
          Length = 658

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/661 (47%), Positives = 448/661 (67%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K +      Q L+GVTGSGKT+TMA +I    +P +
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKDNNHYQTLVGVTGSGKTYTMANIIANTNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  Q  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK H+I P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA  +RDEI +L+
Sbjct: 601 L----RDDEVKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMHLRDEIAKLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|308062389|gb|ADO04277.1| excinuclease ABC subunit B [Helicobacter pylori Cuz20]
          Length = 658

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/661 (47%), Positives = 451/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I  + +P +
Sbjct: 1   MPLFDLKSSYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRVYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  Q  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK H+I P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEVKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|317178583|dbj|BAJ56371.1| excinuclease ABC subunit B [Helicobacter pylori F30]
          Length = 658

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/661 (47%), Positives = 451/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I  + +P +
Sbjct: 1   MPLFDLKSPYPPAGDQPKAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAKINKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  +  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKENVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKLHNITPKTVTRALEEEL- 599

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 600 ---RLRDDEIKIAKALKKDKVPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|294101779|ref|YP_003553637.1| excinuclease ABC, B subunit [Aminobacterium colombiense DSM 12261]
 gi|293616759|gb|ADE56913.1| excinuclease ABC, B subunit [Aminobacterium colombiense DSM 12261]
          Length = 682

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/661 (49%), Positives = 454/661 (68%), Gaps = 6/661 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F ++ D+ PSGDQP AI +L++ + +  + Q LLGVTGSGKTFT+A V+    RP +V+
Sbjct: 4   IFNLKADWGPSGDQPEAIEKLVESLKNGTRFQTLLGVTGSGKTFTVANVLAQFDRPVLVL 63

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LAAQLY+EFK FFPHNAV YFVSYYDYYQPEAY+P +DTYIEK++SIN++I+++R
Sbjct: 64  AHNKTLAAQLYTEFKTFFPHNAVHYFVSYYDYYQPEAYIPSSDTYIEKDASINDRIEKLR 123

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            +AT++L+ER D IVV+SVSCIYG+G  E Y ++I    +G+  +++  +  L+   Y R
Sbjct: 124 LAATKALVERRDVIVVASVSCIYGLGKKEMYEEVIFPFAVGEKWDRRGFMERLIDNYYAR 183

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ +  G FR  GD +EI+PS+ E  A RV+ F ++IE I E  P++G  ++ +    I
Sbjct: 184 NDMLLEAGKFRARGDVLEIYPSYSE-TALRVAFFDDEIERIDEIDPVSGHTLKQLPKASI 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +   HYVT R  ++ AM  I++EL  +L  L+K+G+LLEAQRLE R  YD+EML   G C
Sbjct: 243 FPAQHYVTSRDAIDKAMGQIQQELDEQLHLLKKQGKLLEAQRLEMRTRYDMEMLAEVGYC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL GRNPGEPP TL ++ P+D ++ +DESH+T+PQ+ GMY GD  RK TL E
Sbjct: 303 SGIENYSRYLDGRNPGEPPGTLLDFFPDDFIMVIDESHITLPQVRGMYNGDRARKTTLVE 362

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
            GFRLPSC+DNRPL + E+       I +SATPG WE E     + EQIIRPTG+VDP V
Sbjct: 363 NGFRLPSCLDNRPLNWREFKKYLRQVIFISATPGDWEREVS-TCVAEQIIRPTGVVDPEV 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +  A  QV+D+ D +     +G R L+T LTK+ +EDL EYL +   +V+Y+HSE+   
Sbjct: 422 VVSPATGQVDDLVDRLRGITARGERALVTTLTKKSSEDLAEYLADLQFKVKYIHSELNAF 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER E+IRDLR G+  +LVGINLLREG+D+PE  LVAILDAD+EGFLRS  SLIQ +GRAA
Sbjct: 482 ERAELIRDLRSGEVSILVGINLLREGMDLPEVSLVAILDADREGFLRSHRSLIQIMGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN   +V+LYAD  T+SI+ ++ ET RRRE Q+  N+KH I PQ++ + +  ++     E
Sbjct: 542 RNTRGQVVLYADVETESIRTSVQETRRRREIQMLFNEKHGIIPQTISKTVQNLL----PE 597

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
           +  +  + +++++   +K+  +     L + M  A + L+FE+AA+IRD +   K   + 
Sbjct: 598 EFTSDAVKLESRRGKRTKEVQEYTHSDLERLMWEAVEKLDFEKAAQIRDILTDSKGKEWQ 657

Query: 800 Q 800
           +
Sbjct: 658 R 658


>gi|288574819|ref|ZP_06393176.1| excinuclease ABC, B subunit [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570560|gb|EFC92117.1| excinuclease ABC, B subunit [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 669

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/662 (48%), Positives = 455/662 (68%), Gaps = 8/662 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++++ + PSGDQ  AI +L +G     K Q L+GVTGSGKTFT+A VI+ +QRP ++
Sbjct: 3   SLFKLKSPWAPSGDQGQAIDKLSEGFEKGLKYQTLMGVTGSGKTFTVANVIQKVQRPTLI 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQLYSEF++FFP NAV YFVSYYDYYQPEAYVP +DTYIEK++S+N++I+++
Sbjct: 63  LAHNKTLAAQLYSEFRDFFPDNAVHYFVSYYDYYQPEAYVPSSDTYIEKDASVNDRIEKL 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R +AT++L+ER D IVV+SVSCIYG+G  ++Y + ++   +G+  +++  L SL+   Y 
Sbjct: 123 RLAATKALIEREDVIVVASVSCIYGLGKKKTYEEAVIPFSVGEIWDRRTFLESLMAGYYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+ +  G FRV GD +EIFP++  D   RV  F ++IE I E  P++G+ +   E   
Sbjct: 183 RNDVALSPGNFRVRGDVVEIFPAYS-DTCLRVVFFDDEIESIEETDPVSGKTVLRKERAA 241

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY   HYVT    +  AMK I EE++ ++     +G+ +EAQR+E R  YD+EML  TG 
Sbjct: 242 IYPAQHYVTTDEAVAGAMKAISEEMRQQVDLFTSQGKFIEAQRIESRTRYDMEMLVETGY 301

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRY+ GR+ GEPP TL ++ P+D LL VDESH+T+PQ+ GM+ GD  RK TL 
Sbjct: 302 CSGIENYSRYMDGRSEGEPPGTLIDFFPDDFLLVVDESHITLPQVRGMFNGDRARKETLV 361

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            +GFRLPSC+DNRPLR+EE++     T+ +SATPG WE    +  IVEQ+IRPTG+ DP 
Sbjct: 362 NHGFRLPSCLDNRPLRWEEFSRYMNRTLFLSATPGDWESSMSE-RIVEQVIRPTGIPDPE 420

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V I  A  QV+D+ + +     +  R L+T LTK+ AEDL  YL +  ++ +Y+HS++ T
Sbjct: 421 VLIVPASGQVDDLLERLREVIGKDERALVTTLTKKGAEDLGGYLVDLGLKAKYIHSDLNT 480

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER ++I++LR G   VLVG+NLLREG+D+PE  LVAILDAD+EGFLRS  SLIQ +GRA
Sbjct: 481 FERADLIKELRSGGVSVLVGVNLLREGMDLPEVTLVAILDADREGFLRSYRSLIQVMGRA 540

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARNVNSKV+LYAD +T SI  A+DET RRRE Q+++N++HNI P++V  +I  ++   L+
Sbjct: 541 ARNVNSKVVLYADEMTDSISKAVDETVRRRELQIKYNEEHNIVPKTVYREIRTLLPEELM 600

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           +DA    +     +   + +  +   + L + M  A + L FE AA +RD +  ++    
Sbjct: 601 KDA----LPKGPDKWEETLEGMEE--RDLERLMWEAVEKLQFERAATLRDILGTIRGGEM 654

Query: 799 FQ 800
            +
Sbjct: 655 PR 656


>gi|262067598|ref|ZP_06027210.1| excinuclease ABC subunit B [Fusobacterium periodonticum ATCC 33693]
 gi|291378713|gb|EFE86231.1| excinuclease ABC subunit B [Fusobacterium periodonticum ATCC 33693]
          Length = 663

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/653 (52%), Positives = 472/653 (72%), Gaps = 4/653 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F++ ++Y P GDQP AI  ++K I    K Q+LLGVTGSGKTFT+A VIE +QRPA
Sbjct: 2   ENNLFKIHSEYKPMGDQPTAIESIVKNIERGVKDQVLLGVTGSGKTFTIANVIERLQRPA 61

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID
Sbjct: 62  LIIAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEID 121

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     +++KEL+  L+  +
Sbjct: 122 KLRNAATAALIHRRDVIIVASVSSIYGLGSPDTYRKMTIPIDKQTGIQRKELMKKLITLR 181

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VE 375
           Y+R DI   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQKI+  +E
Sbjct: 182 YERNDIAFERGKFRIKGDVIDIYPSYMNN-GYRLEYWGDDLEEISEINTLTGQKIKKNLE 240

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I IY  + Y+T     +  ++ IK++L++ +   E E +LLEAQRL QR  YDLEM+  
Sbjct: 241 RIVIYPATQYLTADDDKDRIIEEIKDDLRVEVKSFEDEKKLLEAQRLRQRTEYDLEMITE 300

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C+ IENYSRYL+G+ PGE P TLFEY P+D LLF+DESH+T+PQ+ GMY GD  RK 
Sbjct: 301 IGYCKGIENYSRYLSGKRPGETPDTLFEYFPKDFLLFIDESHITVPQVRGMYNGDRARKE 360

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L E GFRL + +DNRPLRFEE+      T+ +SATPG +E+E     I EQ+IRPTG+V
Sbjct: 361 ALVENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEIEVSDNNIAEQLIRPTGIV 420

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR  + QV+D+ DEI     +  R+L+T LTK++AE+LTEY  E  ++V+YMHS+
Sbjct: 421 DPEIEIRPTKNQVDDLLDEIRKRVAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSD 480

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + TLERIEIIR LR G+ DV++GINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTI
Sbjct: 481 IDTLERIEIIRALRKGEIDVIIGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTI 540

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  +NI+P+S+ ++I E  D 
Sbjct: 541 GRAARNVEGRVILYADIMTDSMKEAIIETERRRKIQKEYNAYNNIDPKSIVKEIAE--DL 598

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           I L+         + +++  SK   +  +  L K++    + L+FE+A  +RD
Sbjct: 599 INLDYGIEDKKFENDKKVFRSKADIEKEISKLEKKIKKLVEELDFEQAIVLRD 651


>gi|261839846|gb|ACX99611.1| excinuclease ABC subunit B [Helicobacter pylori 52]
          Length = 658

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/661 (48%), Positives = 452/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA+
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKCLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  +  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++VRYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK H+I P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRTKQEEFNKLHHITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIRIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|194334626|ref|YP_002016486.1| excinuclease ABC subunit B [Prosthecochloris aestuarii DSM 271]
 gi|194312444|gb|ACF46839.1| excinuclease ABC, B subunit [Prosthecochloris aestuarii DSM 271]
          Length = 683

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/670 (47%), Positives = 447/670 (66%), Gaps = 14/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           +++++ Y P GDQP AI  L  G+   E  Q LLGVTGSGKTFTM+ VI    +P +V++
Sbjct: 8   YRLESSYEPMGDQPGAIDALSAGVRDGEPCQTLLGVTGSGKTFTMSNVIARAGKPVLVIS 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K FFPHNAVEYF+SYYD+YQPEAY+P  D YI K+  INE+I+R+R 
Sbjct: 68  HNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPSMDKYIAKDLRINEEIERLRL 127

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT +LL  R D IVVSSVSCIYG+GS E +   I++L+ G  ++++  L  LV   + R
Sbjct: 128 RATSALLSGRRDVIVVSSVSCIYGLGSPEDWMAQILELRTGMDMDREAFLQRLVDLHFVR 187

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ +  G FRV GD I++ P+H ED A RV  +G++I+ +  F P TG+ I   E   I
Sbjct: 188 DDMELSSGKFRVRGDVIDLVPAHEED-ALRVEFYGSEIDRLQLFNPRTGEIIEEQEYACI 246

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +V  +  L  AM  I+ EL  RL     E RL+EA+RLE+R  YDLEM++  G C
Sbjct: 247 YPARQFVADKARLEAAMLSIENELAGRLNTFRAEDRLVEARRLEERTRYDLEMIKELGYC 306

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYS +L+GR  GE P  L +Y  +D ++ +DESHV++PQI GMY GD  RK  L E
Sbjct: 307 SGIENYSSHLSGRKAGERPYCLLDYFQDDYMVVIDESHVSLPQIRGMYAGDRSRKTILVE 366

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLRFEE+  + P  I VSATPG +EL + QG++VEQ++RPTGL+DP +
Sbjct: 367 HGFRLPSALDNRPLRFEEFEEVVPQMICVSATPGDYELTRSQGVVVEQLVRPTGLLDPEI 426

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R    Q++++ +EI     +G + L+  +TKRM+EDL ++L +  +R RY+HSE+K+L
Sbjct: 427 TVRPVSGQIDNLLEEIRQNTAKGFKTLVMTITKRMSEDLHDFLRKAGVRSRYLHSEIKSL 486

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERI+I+R+LR G  DVLVG+NLLREGLD+PE  LVAILDADK+GFLR   SL+Q  GRAA
Sbjct: 487 ERIQILRELRAGDVDVLVGVNLLREGLDLPEVALVAILDADKQGFLRDARSLMQIAGRAA 546

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  +V+ YAD IT S++  IDET RRR+ Q + N++H I P+S+ + + +V++   + 
Sbjct: 547 RNVEGRVVFYADRITPSMREVIDETDRRRKVQQQFNEEHGIVPRSIIKSVDQVLNTTSVA 606

Query: 740 DAATTNISI------------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
           DA                   +    +LS ++  +  + L+ +M  AA+++ +E+AA +R
Sbjct: 607 DAEERFRRKRLGLQQKNERLLEGVIDTLSPEELSSMAEDLKCEMQEAAESMEYEKAAWLR 666

Query: 788 DEIKRLKSSP 797
           DEI +++ + 
Sbjct: 667 DEISKIEHAA 676


>gi|261838445|gb|ACX98211.1| excinuclease ABC subunit B [Helicobacter pylori 51]
          Length = 658

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/661 (47%), Positives = 450/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA+
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++ 
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLEC 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  Q  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK H+I P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|32267047|ref|NP_861079.1| excinuclease ABC subunit B [Helicobacter hepaticus ATCC 51449]
 gi|81835926|sp|Q7VFX7|UVRB_HELHP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|32263099|gb|AAP78145.1| excinuclease ABC [Helicobacter hepaticus ATCC 51449]
          Length = 658

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/661 (49%), Positives = 444/661 (67%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + + + P+GDQP AI ++ + IH+  +   L+GVTGSGKT+TMA +I  +  P +
Sbjct: 1   MGKFILDSQFAPAGDQPQAIQKITQFIHNGAQYSTLVGVTGSGKTYTMANIIANLNIPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M  NK LAAQLYSEF+ FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSINE ++R
Sbjct: 61  IMTHNKTLAAQLYSEFRGFFPKNHVEYFISHFDYYQPEAYIPRRDLFIEKDSSINEDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+   Y  MI + +IG    QK LL  LV   Y
Sbjct: 121 LRLSATTSLLAYDDIIVIASVSANYGLGNPAEYLTMIHKFEIGQEEAQKTLLLKLVDMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D    RG FRV G+ I+IFP++ E    R+  FG++IE I  F  L    +  +E+ 
Sbjct: 181 TRNDTIFERGNFRVNGEVIDIFPAYNEKEFIRIEFFGDEIERIGVFDALERTALTQLESF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA + ++     L +A+K I+ EL+ RL E   + + +E QRL+ R  +DLEM++ +G
Sbjct: 241 VLYAANQFIVGAQRLQSAIKNIEVELENRLEEFVSQDKQIEYQRLKTRTEFDLEMIKESG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+LTG+  GE P +L +Y     +  LL VDESHV++PQ  GMY GD  RK
Sbjct: 301 ICKGIENYARHLTGKKAGETPYSLLDYFEQKGKPYLLIVDESHVSLPQFGGMYAGDRSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L EYGFRLPS +DNRPLRF+E+    P  + VSATP   ELE  Q  I EQIIRPTGL
Sbjct: 361 EVLVEYGFRLPSALDNRPLRFDEFINKAPHFLFVSATPAQKELELSQEHIAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R A   V D+YDEI     +  R+L+T LTK+MAE+L++Y  E  I+VRYMHS
Sbjct: 421 LDPLYEVRDADNAVLDLYDEIKARIAKNQRVLITTLTKKMAEELSKYYAELGIKVRYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER  +IR LRLG+FDVL+GINLLREGLD+PE  L+AI+DADKEGFLRS+TSLIQT
Sbjct: 481 DIDAIERNHLIRALRLGEFDVLIGINLLREGLDLPEVSLIAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARNV  KVILYA  IT S+Q A + T  RR KQ E N+ HNI P+SV+  + + + 
Sbjct: 541 MGRAARNVEGKVILYAKKITGSMQRAFEVTDYRRTKQEEFNRIHNITPKSVQRNVEQELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                +++  +   +     + K + ++ +K L  +MH AA  L FEEAAR+RDEI R++
Sbjct: 601 I----ESSGLSRLYEKASKKIPKSERESIIKELNIKMHQAAKALEFEEAARLRDEIARIR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|109947030|ref|YP_664258.1| excinuclease ABC subunit B [Helicobacter acinonychis str. Sheeba]
 gi|123362731|sp|Q17YL7|UVRB_HELAH RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|109714251|emb|CAJ99259.1| excinuclease ABC subunit B [Helicobacter acinonychis str. Sheeba]
          Length = 658

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/661 (48%), Positives = 452/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y  +GDQP AI  L K + ++   Q L+GVTGSGKT+TMA +I    +P +
Sbjct: 1   MPLFDLKSPYSLAGDQPQAIDTLTKSLKNKNHYQTLVGVTGSGKTYTMANIIAQTNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRAMGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKILEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  +  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++VRYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FDVL+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + TT RR KQ E NK HNI P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFETTTYRRAKQEEFNKLHNITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                    T I+   ++  + K + +  +K L K+M   A NL+FEEA  +RDEI +L+
Sbjct: 601 L----RDDETKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMHLRDEIAKLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|85057679|ref|YP_456595.1| excinuclease ABC subunit B [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|123518201|sp|Q2NJ77|UVRB_AYWBP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|84789784|gb|ABC65516.1| excinuclease ABC subunit B [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 667

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/664 (49%), Positives = 452/664 (68%), Gaps = 8/664 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++Q+   PSGDQP AI +L+       K Q+LLG TG+GKTFT+A +I+ +Q+  +V
Sbjct: 5   NLFKLQSSLKPSGDQPQAIQKLVNNFKQGLKEQILLGATGTGKTFTIANIIQHLQQKTLV 64

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LA QLY+E K  FP+N VEYF+SYYDYYQPEAYV  +DTYIEK+S IN++ID++
Sbjct: 65  IAHNKTLAGQLYNELKAMFPNNRVEYFISYYDYYQPEAYVASSDTYIEKDSKINDEIDQL 124

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSA  SL+ R+D IVV+SVSCIYG+G ++ Y +  + L+IGD  E+K L++ L++ +Y+
Sbjct: 125 RHSAAGSLINRDDVIVVASVSCIYGVGDLKDYQKSTLHLQIGDKYERKNLINKLIELKYQ 184

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +I   RGTFRV GD IEI  S  +++  R+  FGN+IE I  FY L G+ I N++ I 
Sbjct: 185 RNEINFQRGTFRVRGDIIEIIASSSKEIGIRIIFFGNEIENIQNFYVLNGKAIANLKLIT 244

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++  S Y T    L  ++K I++ELK ++   EK  +LL AQ+++ R  +DLEMLE  G+
Sbjct: 245 LFPASLYATNNQKLQESIKRIRQELKEQINHFEKTNQLLAAQKIKMRTLHDLEMLEQIGN 304

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  +ENYSR+L  +  GE P TL ++   D L  VDESHVTIPQI GMY GDF RK  L 
Sbjct: 305 CNGVENYSRHLALKGKGEAPSTLIDFFGNDFLTIVDESHVTIPQIKGMYFGDFSRKNNLV 364

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            +GFRLPS +DNRPL+F E+       I +SATPG +EL + +  IVEQIIRPT ++DP 
Sbjct: 365 NFGFRLPSALDNRPLKFNEFQEKMNKVIYLSATPGDYELTK-KIPIVEQIIRPTFVLDPE 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R    Q++D+Y EI    +   RIL+T LT  M+EDLT YL    I+V Y+HSE+K+
Sbjct: 424 IEVRPTNNQMDDLYFEIKHQTKNNQRILITTLTINMSEDLTTYLKNLGIKVAYLHSEIKS 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L+R+EI++DLRLGK+D LVG+NLLREGLD+PE  LVAILDADK+GFLR++ SLIQTIGRA
Sbjct: 484 LQRLEILKDLRLGKYDCLVGVNLLREGLDLPEVALVAILDADKQGFLRNERSLIQTIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  K I+YAD I+ ++Q+AI+ET RRR+ Q ++N+   + P ++ + I+E I     
Sbjct: 544 ARNITGKAIMYADCISPAMQIAIEETYRRRKIQKQYNETMKVTPTALNKTILETISIKQK 603

Query: 739 EDAATTNISIDAQQL-----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           E           Q+      +++ K     +K L+K M  AA  L+FE+AA +RD I  L
Sbjct: 604 ERIKNEKGKSKVQKKLQINTNMTAKN--KEIKRLQKTMKEAAKALDFEKAATLRDLILDL 661

Query: 794 KSSP 797
           +   
Sbjct: 662 EKKE 665


>gi|217034664|ref|ZP_03440069.1| hypothetical protein HP9810_901g11 [Helicobacter pylori 98-10]
 gi|216942872|gb|EEC22363.1| hypothetical protein HP9810_901g11 [Helicobacter pylori 98-10]
          Length = 658

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/661 (47%), Positives = 451/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I  + +P +
Sbjct: 1   MPLFDLKSPYLPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQINKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SA  SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  +  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++ RYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK H+I P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M   A NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|223557935|gb|ACM90942.1| UvrABC [uncultured bacterium URE12]
          Length = 697

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/661 (51%), Positives = 454/661 (68%), Gaps = 5/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F + + + P+GDQP AI  L  GI + +  Q+LLGVTGSGKTFTMA VIE +Q+PA+
Sbjct: 1   MSRFHLVSPFRPAGDQPRAIDALCAGIEAGKADQVLLGVTGSGKTFTMASVIERLQKPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++PNK+LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAY+P TDTYIEK++++N+ ID+
Sbjct: 61  VLSPNKVLAAQLYSEFKTFFPENAVEYFVSYYDYYQPEAYIPSTDTYIEKDAAVNDHIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R  AT S+L R D IVV+SVSCIY IGS ++++ M + ++    V +KEL  +LVK +Y
Sbjct: 121 LRLKATTSILTRRDTIVVASVSCIYNIGSPDNFNNMCLHIQKEMPVSRKELTETLVKMRY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R DI   R  FRV G +I+IFP+  E +A R+ +F   IE I E  PLTG   + +  +
Sbjct: 181 ERNDIEFNRKNFRVRGGNIDIFPADSE-LAIRL-IFDETIERICEIDPLTGDVKKEMNDV 238

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  +H++T    + +A   I+ EL+ R+      G+ LEA+R+EQR  YDLEM+  TG
Sbjct: 239 WIFPATHFITSAEEMESAAVRIEAELEERIKWFRAHGKPLEAERIEQRTRYDLEMIRQTG 298

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI-PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
            C+ +ENYSRYL GR  G  P +LF Y   +D LLF+DESHV +PQI GMY GD  RK  
Sbjct: 299 YCRGVENYSRYLAGREAGSMPDSLFGYYRNQDFLLFIDESHVALPQIRGMYEGDRARKQC 358

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLV 555
           L ++GFRLPS +DNRPL+F+E+  LRP T+ VSATPG  EL +C +  IVEQIIRPTGL 
Sbjct: 359 LVDFGFRLPSALDNRPLKFDEFESLRPATVYVSATPGPIELSRCPEDSIVEQIIRPTGLT 418

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP V+I     Q++ +  EI   A++  R L+  LTK+ AEDL+ YL E+ +R RYMHS+
Sbjct: 419 DPEVKILPVTGQIQALQKEIAERAEKKERCLVLTLTKKTAEDLSSYLEEKGLRARYMHSD 478

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + TLER++I+   R G+FD LVGINLLREGLDIPE  LVAIL+AD EGFLRS+T+LIQ  
Sbjct: 479 MDTLERLDILAAFRRGEFDALVGINLLREGLDIPEVSLVAILNADNEGFLRSETTLIQIA 538

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV  +VIL+AD  T SI  A+ E  RRR  Q+E+N+ H I P+S+ + I++  + 
Sbjct: 539 GRAARNVGGEVILFADRETGSIGRAVAEMNRRRNIQVEYNRTHGITPKSIVKDIVDYDEL 598

Query: 736 ILLEDAATTNI-SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              +++AT  +  +      +SK         + + M  AA+NLNFE AA +RD +  LK
Sbjct: 599 HRPDNSATATVREVLPDYGKMSKSALSQLADDMERMMREAAENLNFERAAELRDRLAELK 658

Query: 795 S 795
            
Sbjct: 659 E 659


>gi|150400336|ref|YP_001324103.1| excinuclease ABC subunit B [Methanococcus vannielii SB]
 gi|150013039|gb|ABR55491.1| excinuclease ABC, B subunit [Methanococcus vannielii SB]
          Length = 649

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/663 (50%), Positives = 453/663 (68%), Gaps = 21/663 (3%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSR--EKVQLLLGVTGSGKTFTMAKVIEAMQR 194
               F++++D+ P G QP+AI +L+  +        Q LLGVTGSGKTFT+A VIE +++
Sbjct: 2   SFPEFRLKSDFEPKGSQPSAIDKLVFDLTKNPENSKQTLLGVTGSGKTFTIANVIEKVKK 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+A NK LAAQLY+EFK FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +
Sbjct: 62  PTLVIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPK 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR  A+ ++L R D I+V+SVSCIYG+GS + + +M  +LK G  +++ E++  LV 
Sbjct: 122 IEQMRLRASSAILSRRDVIIVASVSCIYGLGSPKLFKEMGFELKKGSKIKRAEIIEKLVD 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY+R D  ++ G FRV GD+I+I P + ++   R+ +FG++I+ I E       K   +
Sbjct: 182 IQYERNDTELVSGRFRVKGDTIDIIPGYQDE-TIRLELFGDEIDRIYELDSKNMTKKHEL 240

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
            +  +Y   H+VT   +   A+K I +EL   L  LE    +L+A RL+Q+  YD+EM+E
Sbjct: 241 ASFYMYPAKHFVTTEESKKNAIKSILKELDEWLPHLE----MLKANRLKQKTLYDIEMIE 296

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            TGSC+ IENYSR+   R   EP   L +Y P+D L+ +DESH TIPQI GMY+GD  RK
Sbjct: 297 ETGSCKGIENYSRHFENRGENEPAYCLLDYFPDDFLIVIDESHQTIPQIRGMYKGDRSRK 356

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +L +YGFRLPS  DNRPL+FEE+       I VSATPG +ELE+    IVEQIIRPTGL
Sbjct: 357 KSLIDYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELEKSNQ-IVEQIIRPTGL 415

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP VEIR  + QVED+ +E     ++G R+L+T LTKR++E+LTEYL ++N++ RY+HS
Sbjct: 416 LDPKVEIRPIKGQVEDIINETEKMVKRGERVLITTLTKRLSEELTEYLAQKNVKARYLHS 475

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER EIIR+LRLGKFD LVGINLLREGLDIPE G V ILDADKEGFLR+  SLIQT
Sbjct: 476 DIDTIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQT 535

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN NSKV+LYAD IT SIQ A+ ET RRR+ Q E+N KH+I P+++ + I + + 
Sbjct: 536 IGRAARNANSKVVLYADKITDSIQKAVFETKRRRKIQEEYNIKHDITPKTIVKPIRDKVV 595

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            I+                 + K +    +  L  +M+LAA+ L FE A +IRD+I +LK
Sbjct: 596 DIV-------------DIKHIPKSEIPNVIVELESEMYLAAEALEFERAIQIRDKIAKLK 642

Query: 795 SSP 797
              
Sbjct: 643 KKA 645


>gi|108804843|ref|YP_644780.1| excinuclease ABC subunit B [Rubrobacter xylanophilus DSM 9941]
 gi|108766086|gb|ABG04968.1| Excinuclease ABC subunit B [Rubrobacter xylanophilus DSM 9941]
          Length = 625

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/622 (53%), Positives = 446/622 (71%), Gaps = 2/622 (0%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGSGKT TMA+VIE + RPA+V+A NK LAAQL SEF  FFP+NAVEYFVSYYDYYQPE
Sbjct: 1   MTGSGKTHTMARVIEKVGRPALVIAHNKTLAAQLASEFSEFFPNNAVEYFVSYYDYYQPE 60

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           AYVP+TDT+IEK++ INE IDR+RHSAT +L  R D IVV+SVS IYG+GS E Y Q +V
Sbjct: 61  AYVPQTDTFIEKDAQINEDIDRLRHSATSALFTRRDVIVVASVSAIYGLGSPEEYRQKMV 120

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L+ G   +  ++L  LV+ QY R D  + RG FRV GD +E+ P++ +D  +R+S FG+
Sbjct: 121 LLERGGFYDLDDVLRDLVRIQYTRNDYQLSRGNFRVRGDVLEVHPAY-QDTFYRLSFFGD 179

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           ++E I E  P+TG+ +R  E++ +Y  +H+VT    L  A++ I+ EL+ R  ELE+EG+
Sbjct: 180 ELEGIMEVDPVTGEVLREPESLTVYPATHFVTGEERLRRAIEGIEAELEERYAELEREGK 239

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           +LEA RL QR  YDLEML   G C  IENYSR+L GR PG  P TL +Y PED + FVDE
Sbjct: 240 MLEAYRLRQRTQYDLEMLRELGYCSGIENYSRHLDGRPPGSTPYTLLDYFPEDYVTFVDE 299

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
           SH+T+PQI GMY GD  RK TL E+GFRLPS +DNRPLR+EE+       + VSATPG +
Sbjct: 300 SHITLPQIRGMYNGDRSRKETLVEHGFRLPSALDNRPLRWEEFLLKTNQLVFVSATPGPY 359

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           ELE  +  +VEQIIRPTGLVDP VE+R  R Q++D+ +E++   ++  R+L+T LT +MA
Sbjct: 360 ELENSE-RVVEQIIRPTGLVDPEVEVRPTRNQIDDLMNEVHRRVERNERVLITTLTIKMA 418

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           EDLT+YL E  ++ RYMH+ ++TL+RI+IIR LR G+FDVLVGINLLREGLD+PE  LVA
Sbjct: 419 EDLTDYLLEHGVKARYMHANIETLDRIQIIRGLRTGEFDVLVGINLLREGLDLPEVSLVA 478

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
           ILDADKEGFLR + +LIQTIGRAARN N +VI+YADT T++++ AI ET RRR  Q+E+N
Sbjct: 479 ILDADKEGFLRGERALIQTIGRAARNANGRVIMYADTETEAMRAAIRETNRRRSIQMEYN 538

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAA 775
           ++H I P+++++ + +++                A +      + +  +  L+ +M  AA
Sbjct: 539 RRHGIEPRTIRKGVSDILLAAEARGLYRAGRRRRAAEAPRDPGELRDLIARLQAEMMEAA 598

Query: 776 DNLNFEEAARIRDEIKRLKSSP 797
           + L FE AA++RDEIK L+   
Sbjct: 599 EELKFEYAAKLRDEIKDLEREL 620


>gi|300709532|ref|YP_003735346.1| excinuclease ABC subunit B [Halalkalicoccus jeotgali B3]
 gi|299123215|gb|ADJ13554.1| excinuclease ABC subunit B [Halalkalicoccus jeotgali B3]
          Length = 686

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/666 (50%), Positives = 447/666 (67%), Gaps = 7/666 (1%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
            +  +    F+++  + P+GDQP AI QL+ G  S    Q LLGVTGSGKT T++  +E 
Sbjct: 11  PDRPEAEKPFRVEAPFEPAGDQPEAIEQLVSGYESGMDRQTLLGVTGSGKTNTVSWTVEG 70

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +Q P +V+A NK LAAQLY EF+N FP NAVEYFVSYYDYYQPEAYV  +DTYI+K++SI
Sbjct: 71  IQTPTLVIAHNKTLAAQLYEEFRNLFPDNAVEYFVSYYDYYQPEAYVEASDTYIDKDASI 130

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           N++IDR+RHSATRSLL R+D IVV+SVS IYG+G   +Y  M +QL+ G  +++ ELL  
Sbjct: 131 NDEIDRLRHSATRSLLTRDDVIVVASVSAIYGLGDPRNYVDMSLQLEQGQRIDRDELLKG 190

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV   Y+R D+   +GTFRV GD++E+FP +    A RV  +G++I+ +S+  PL G   
Sbjct: 191 LVDLNYERNDVDFTQGTFRVRGDTVEVFPMYG-RYAVRVEFWGDEIDRLSKLDPLEGDLK 249

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
                + I+   HY  P   +  A+  I+E+L+ R+   E+ G +L AQR+E+R T+D+E
Sbjct: 250 SEEPAVLIHPAEHYSIPEQRMENAISEIEEDLEKRIRYFERNGDMLSAQRIEERTTFDIE 309

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M+  TG C  IENYS YL+ R  G+ P TL +Y P+D L  +DESH TIPQI G Y GD 
Sbjct: 310 MMRETGYCSGIENYSVYLSDRESGDAPYTLLDYFPDDFLTVIDESHQTIPQIKGQYAGDK 369

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK +L E GFRLP+  DNRPL FEE+       + VSATPG +E +  +  IVEQI+RP
Sbjct: 370 SRKDSLVENGFRLPTAYDNRPLTFEEFEERVGKRLYVSATPGDYERDVSEQ-IVEQIVRP 428

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           T LVDP V ++SA+ Q++D+   I+    +  R+L+T LTKRMAEDLTEYL    + V Y
Sbjct: 429 THLVDPAVSVQSAQEQIDDLMARIDERTDRDERVLVTTLTKRMAEDLTEYLENSGVGVEY 488

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH E  TLER E+IR LRLG+FDVLVGINLLREGLDIPE  LVAILDAD++GFLRS+T+L
Sbjct: 489 MHDETDTLERHELIRGLRLGEFDVLVGINLLREGLDIPEVSLVAILDADQQGFLRSRTTL 548

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           IQT+GRAARN   +V+LYAD  T ++  AI+ET RRRE Q E N+ H+  P ++ +++ E
Sbjct: 549 IQTMGRAARNAEGEVVLYADETTDAMAEAIEETQRRREIQREFNEAHDYTPTTIDKEVSE 608

Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
              P      + T+ S          +  +A ++SL ++M+ AA NL FE AA IRD I+
Sbjct: 609 TNLP-----GSKTDTSGVTGDAPEDTEAAQARVQSLEERMNEAASNLEFELAADIRDRIR 663

Query: 792 RLKSSP 797
            L+   
Sbjct: 664 ELREEF 669


>gi|254779666|ref|YP_003057772.1| excinuclease ABC subunit B [Helicobacter pylori B38]
 gi|254001578|emb|CAX29614.1| UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B)
           [Helicobacter pylori B38]
          Length = 658

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/661 (47%), Positives = 450/661 (68%), Gaps = 7/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP  I  L K + +    Q L+GVTGSGKT+TMA +I    +P +
Sbjct: 1   MPLFDLKSPYPPAGDQPQTIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFPHN VEYF+S++DYYQPE+Y+PR D +IEK+SSIN+ ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K  L  LV+  Y
Sbjct: 121 LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE I+ F  L   +I+ ++++
Sbjct: 181 SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA S +      LN A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG
Sbjct: 241 MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+ P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK
Sbjct: 301 VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           + L EYGFRLPS +DNRPL+F+E+       + VSATP   ELE  +  + EQIIRPTGL
Sbjct: 361 SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGL 420

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R +  QV+D++DEI L   +  R+L+T LTK+MAE+L +Y  E  ++VRYMHS
Sbjct: 421 LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMHS 480

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER  IIR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQT
Sbjct: 481 EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT 540

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E + 
Sbjct: 541 MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELK 600

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                      I+   ++  + K + +  +K L K+M     NL+FEEA R+RDEI +L+
Sbjct: 601 L----RDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECTKNLDFEEAMRLRDEIAQLR 656

Query: 795 S 795
           +
Sbjct: 657 T 657


>gi|149193929|ref|ZP_01871027.1| excinuclease ABC subunit B [Caminibacter mediatlanticus TB-2]
 gi|149135882|gb|EDM24360.1| excinuclease ABC subunit B [Caminibacter mediatlanticus TB-2]
          Length = 676

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/679 (49%), Positives = 458/679 (67%), Gaps = 28/679 (4%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ + Y P+GDQP AI +L   I    +   L+GVTGSGKTFTMA +IE +Q P +++
Sbjct: 1   MFKLNSTYKPTGDQPKAIEKLTNCIKKGSRYNTLIGVTGSGKTFTMANIIEKLQIPTLIL 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
             NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SSIN +++R+R
Sbjct: 61  THNKTLAAQLYSEFKEFFPQNHVEYFISYYDYYQPEAYLPRQDLFIEKDSSINAELERLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLLE +D IVV+SVS +YG+G+   Y +M+ ++ +GD + Q++ +  L+   Y R
Sbjct: 121 VSATASLLEYDDVIVVASVSALYGLGNPLEYKKMVAKIAVGDEINQRDFMLRLLSMGYTR 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RG FRV G+ I+IFP++ ED   RV  FG++I+ I     +T +KI++++ I I
Sbjct: 181 NDKYFERGNFRVNGEVIDIFPTYFEDDVIRVEFFGDEIDRIYTIDYITNEKIQDIKEITI 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA + ++     L  A+  I++EL  RL E E +G+++E QRL+QR  +DLEMLETTG+C
Sbjct: 241 YAANQFIVGANRLAEAINSIEKELLHRLREFEAQGKIIEYQRLKQRTEFDLEMLETTGTC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+LTG+ PGE P +L +Y     +  L+ VDESHV++PQ  GMY GD  RK  
Sbjct: 301 KGIENYARHLTGKKPGETPYSLLDYFEIKGKPYLVIVDESHVSLPQFRGMYNGDRARKEV 360

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRP +F+E+    P  + VSATPG +ELE     I EQIIRPTGL+D
Sbjct: 361 LVEYGFRLPSALDNRPYKFDEFINKAPHYLFVSATPGEFELEIS-TCIAEQIIRPTGLLD 419

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P VE+  ++ QV  +YD+      +G R+L+T LTK+MAE+L +Y  E  ++V+YMHS++
Sbjct: 420 PVVELYPSKDQVATLYDKAKEVISKGERVLVTTLTKKMAEELQKYYLELGLKVKYMHSDI 479

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
             +ER EIIR LR G+FD+L+GINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT+G
Sbjct: 480 DVVERNEIIRGLRSGEFDMLIGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTMG 539

Query: 677 RAARNVNSKVILYA--------------------DTITKSIQLAIDETTRRREKQLEHNK 716
           RAARNVN +V+++A                    D ITKS+  AI  T +RR KQ E+NK
Sbjct: 540 RAARNVNGRVLMFADKITDPIIIDDNLEDLEKIKDKITKSMYNAIKTTIQRRIKQKEYNK 599

Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
            HNI P+S   K    +D  L E+           +  +  ++ K  LK L++QM  AA 
Sbjct: 600 LHNITPKSTIRK----LDKSLKEEGYEAISKELKNKNKIPPREKKEILKKLKQQMQEAAK 655

Query: 777 NLNFEEAARIRDEIKRLKS 795
           NL FE+AA +RD+IK LK 
Sbjct: 656 NLEFEKAAMLRDKIKELKE 674


>gi|315638204|ref|ZP_07893386.1| excision endonuclease subunit UvrB [Campylobacter upsaliensis JV21]
 gi|315481740|gb|EFU72362.1| excision endonuclease subunit UvrB [Campylobacter upsaliensis JV21]
          Length = 656

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/658 (50%), Positives = 443/658 (67%), Gaps = 7/658 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ+Q+++ PS DQ  AI  ++K I +  K Q LLGVTGSGKTFTMA VI+ +  P ++M
Sbjct: 1   MFQLQSEFKPSFDQKEAIEGIIKSIKAGHKYQTLLGVTGSGKTFTMANVIKELAMPTLIM 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN +EYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R
Sbjct: 61  SHNKSLCAQLYSEFKGFFPHNHIEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL   D + ++SVS  YG+G+   Y  M++  +    + QK LL  LV   YKR
Sbjct: 121 LSATASLLSYEDVVCIASVSANYGLGNPSEYEGMVLIFEENMQISQKALLKKLVDMGYKR 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    R  FRV GD+++I+P++ ED   R+  FG+D+E I  +  L  +K ++++   +
Sbjct: 181 NDTFFDRADFRVSGDTVDIYPAYYEDEVVRLEFFGDDLERIYHYNILENKKTKDLKRFIL 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  S +      L  A+K IKEEL  RL   E E +L+E QRL+QR+ +DLEML++TG C
Sbjct: 241 YPTSQFSVGEARLKEAIKEIKEELNSRLAYFENENKLVEYQRLKQRVEFDLEMLQSTGMC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK T
Sbjct: 301 KGVENYARHLTGLKEGQTPYTLFDYYAIKKRPFLVIVDESHVSLPQFRGMFAGDRSRKQT 360

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL F+E+       + VSATP   EL+     I  QI+RPTGL+D
Sbjct: 361 LVDYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLELDLSGKNIFHQIMRPTGLLD 420

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E++ +  QVE +YDE      +  RIL+TVLTK++AE+L+ Y  E  +RV+YMHS++
Sbjct: 421 PIIELKDSHNQVEILYDEAKKVIARNERILVTVLTKKLAEELSRYYLELGLRVKYMHSDI 480

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
             +ER E+IR LR G+FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+G
Sbjct: 481 DAIERNELIRGLRSGEFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMG 540

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN KV+L+   ITKS+Q AID T+ RR+ Q E+NKKH I P SVK  + E +   
Sbjct: 541 RAARNVNGKVLLFCQKITKSMQEAIDTTSERRKLQEEYNKKHKITPTSVKRNLEESLKNE 600

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            L +         A+   +   +    +K LRK+M  AA NL FE+AA +RDEIK+ K
Sbjct: 601 DLGEI----YRKGAKFEKMPASERAKFVKELRKEMLEAAKNLEFEKAAALRDEIKKFK 654


>gi|222099925|ref|YP_002534493.1| UvrABC system protein B [Thermotoga neapolitana DSM 4359]
 gi|254764916|sp|B9K844|UVRB_THENN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|221572315|gb|ACM23127.1| UvrABC system protein B [Thermotoga neapolitana DSM 4359]
          Length = 664

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/660 (49%), Positives = 453/660 (68%), Gaps = 4/660 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +++ P+GDQP AI +L++G++   + Q LLGVTGSGKTFTMA VI  + RPA+V+
Sbjct: 1   MFKLVSEFEPTGDQPQAIEKLVEGLNRGMRFQTLLGVTGSGKTFTMANVIARVNRPALVI 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           +PNK LAAQLY EFK FFP N VE+F+SYYDYYQPEAY+P  D YIEK + IN+ I RMR
Sbjct: 61  SPNKTLAAQLYQEFKTFFPENRVEFFISYYDYYQPEAYIPTKDLYIEKNADINDVIVRMR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            S  +S+  R D IVV+SVSCIY  G    + +M ++L +G+ ++  EL   L K  Y+R
Sbjct: 121 MSTLKSVRTRRDVIVVASVSCIYATGDPNDFDRMNIKLSVGERLDVFELAEKLAKIGYQR 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +   + G FR+ GD++EI+P++ ++   RV  FG++I+ IS         +  ++ + I
Sbjct: 181 TEDVSLSGCFRIRGDTLEIYPTYQDE-GIRVEFFGDEIDAISLIDRFNRTTLERLDKVII 239

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +VT    L  A++ IKEEL+ RL EL+K+G++LE +RL+QR   D+E+LET G C
Sbjct: 240 YPAVEFVTTEEKLRRAIESIKEELRERLAELKKQGKVLEYERLKQRTLNDIELLETMGYC 299

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GR PGEPP TL +Y  +D ++F+DESH+T+PQ+  MY GD  RK  L E
Sbjct: 300 PGIENYSRHFDGRKPGEPPYTLLDYFDDDFVVFIDESHITVPQLRAMYNGDRSRKKNLVE 359

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS  DNRPL FEE+       + VSATPG +EL   +  +VEQIIRPTGLVDP V
Sbjct: 360 YGFRLPSAYDNRPLTFEEFLKKVGQIVFVSATPGDFELSVSEQ-VVEQIIRPTGLVDPEV 418

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  R QV+D+ +EI    Q+G R L+TVLTK+ AE L+E+L E  I+  Y+HSE+  +
Sbjct: 419 EVRPTRGQVDDLINEIVKVKQRGERALVTVLTKKTAELLSEHLTELGIKSLYLHSELDAI 478

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+E+++ LR G  DV+VG+NLLREGLD+PE  LVAI+DAD EGFLRS+T+LIQ IGR A
Sbjct: 479 ERVEVLKKLRRGDVDVVVGVNLLREGLDLPEVSLVAIMDADTEGFLRSETTLIQIIGRTA 538

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM-EVIDPILL 738
           RNVN KVI+YAD IT +++ AI+ET RRR  QLE+NKKH I P+S+ + +  EV +  ++
Sbjct: 539 RNVNGKVIMYADRITNAMKRAIEETNRRRRIQLEYNKKHGITPRSIVKPLEIEVFEQFMV 598

Query: 739 EDAATTNISIDAQQLSLSKK-KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++             S+ +    + ++  L ++M+ AA  L +E+AA +RDE+ R+K + 
Sbjct: 599 KEEPAEYGDTIKNIFSMKESLSLEEYVALLEEEMYRAASELRYEDAAALRDELFRVKETL 658


>gi|57242081|ref|ZP_00370021.1| excinuclease ABC, B subunit [Campylobacter upsaliensis RM3195]
 gi|57017273|gb|EAL54054.1| excinuclease ABC, B subunit [Campylobacter upsaliensis RM3195]
          Length = 656

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/658 (50%), Positives = 443/658 (67%), Gaps = 7/658 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            FQ+Q+++ PS DQ  AI  ++K I +  K Q LLGVTGSGKTFTMA VI+ +  P ++M
Sbjct: 1   MFQLQSEFKPSFDQEEAIMGIVKSIKAGHKYQTLLGVTGSGKTFTMANVIKELAMPTLIM 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFPHN +EYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R
Sbjct: 61  SHNKSLCAQLYSEFKGFFPHNHIEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL   D + ++SVS  YG+G+   Y  M++  +    + QK+LL  LV   YKR
Sbjct: 121 LSATASLLSYEDVVCIASVSANYGLGNPSEYEGMVLIFEENMQISQKDLLKKLVDMGYKR 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    R  FRV GD ++I+P++ ED   R+  FG+D+E I  +  L  +K ++++   +
Sbjct: 181 NDNFFDRADFRVNGDLVDIYPAYYEDEVVRLEFFGDDLERIYHYNILENKKTKDLKRFIL 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  S +      L  A+K IKEEL  RL   E E +L+E QRL+QR+ +DLEML++TG C
Sbjct: 241 YPTSQFSVGEARLKEAIKAIKEELNARLAYFENENKLVEYQRLKQRVEFDLEMLQSTGMC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + +ENY+R+LTG   G+ P TLF+Y        L+ VDESHV++PQ  GM+ GD  RK T
Sbjct: 301 KGVENYARHLTGLKEGQTPYTLFDYYAIKKRPFLVIVDESHVSLPQFRGMFAGDRSRKQT 360

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS +DNRPL F+E+       + VSATP   ELE     I  QI+RPTGL+D
Sbjct: 361 LVDYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLELELSGKNIFHQIMRPTGLLD 420

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E++ +  QVE +YDE      +  RIL+TVLTK++AE+L+ Y  E  +RV+YMHS++
Sbjct: 421 PIIELKDSTNQVEILYDEAKKVIARNERILVTVLTKKLAEELSRYYLELGLRVKYMHSDI 480

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
             +ER E+IR LR G+FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+G
Sbjct: 481 DAIERNELIRGLRSGEFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMG 540

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNVN KV+L+   ITKS+Q AID T+ RR+ Q E+NKKH I P SVK  + + +   
Sbjct: 541 RAARNVNGKVLLFCQKITKSMQEAIDTTSERRKLQEEYNKKHKITPTSVKRNLEQSLKNE 600

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            L +         A+   +   +    +K LRK+M  AA NL FE+AA +RDEI++ K
Sbjct: 601 DLGEI----YRKGAKFEKMPANERAKFVKELRKEMLEAAKNLEFEKAAALRDEIRKFK 654


>gi|257053424|ref|YP_003131257.1| excinuclease ABC subunit B [Halorhabdus utahensis DSM 12940]
 gi|256692187|gb|ACV12524.1| excinuclease ABC, B subunit [Halorhabdus utahensis DSM 12940]
          Length = 685

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/679 (50%), Positives = 452/679 (66%), Gaps = 12/679 (1%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFT 184
           P      +  S+    F++   + P+GDQP AIAQL +G  S    Q LLGVTGSGKT T
Sbjct: 7   PLSPDRPDAESE----FRVDAPFDPAGDQPNAIAQLAEGYRSGMDEQTLLGVTGSGKTNT 62

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           ++ V+E +Q+P +V+A NK LAAQLY EF+  FP NAVEYFVSYYDYYQPEAYV +TD Y
Sbjct: 63  VSWVLEEIQQPTLVIAHNKTLAAQLYEEFRELFPDNAVEYFVSYYDYYQPEAYVEQTDKY 122

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304
           IEK++SIN++IDR+RHSATRSLL R+D IVV+SVS IYG+G   +Y  M ++L++G  ++
Sbjct: 123 IEKDASINDEIDRLRHSATRSLLTRDDVIVVASVSAIYGLGDPANYVDMSLRLEVGQEID 182

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + ELL  LV   Y+R D+   +GTFRV GD++EI+P +    A RV ++G +I+ IS+  
Sbjct: 183 RDELLGRLVDLNYERNDVDFTQGTFRVRGDTVEIYPMYG-RYALRVELWGEEIDRISKLD 241

Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
           PL G+         I+   HY  P   +  A++ I+E ++ R+   E++G L+ AQR+E+
Sbjct: 242 PLEGELQSEEPAALIHPAEHYSIPEQEIENAIEEIEELMERRVDYFERQGDLVAAQRIEE 301

Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484
           R T+DLEMLE TG C  IENYS +L+ R  GE P TL +Y P+D L  VDESH TIPQI 
Sbjct: 302 RTTFDLEMLEETGYCSGIENYSVHLSDRESGEAPYTLLDYFPDDFLTVVDESHQTIPQIK 361

Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544
           G Y GD  RK +L E GFRLP+  DNRPL FEE+      T+ VSATP  +E EQ    +
Sbjct: 362 GQYEGDKSRKDSLVENGFRLPTAYDNRPLTFEEFEEKTDQTLYVSATPSDYEREQSDQ-V 420

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           VEQI+RPT LVDP +E+  A +QV+D+ D ++       R L+T LTKRMAEDLTEYL E
Sbjct: 421 VEQIVRPTYLVDPEIEVSPAESQVDDLMDRLDALPD-DERALVTTLTKRMAEDLTEYLEE 479

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
             + V YMH E  TLER E++R LR G+FDVLVGINLLREGLDIPE  LVAILDAD+EGF
Sbjct: 480 AGVAVEYMHDETDTLERHELVRGLRAGEFDVLVGINLLREGLDIPEVSLVAILDADQEGF 539

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
           LRS+T+L+QT+GRAARNVN KV+LYAD  + +++ AI ET RRR  Q E+N+++   P +
Sbjct: 540 LRSETTLVQTMGRAARNVNGKVVLYADEPSDAMESAIAETKRRRRIQREYNEEYGHEPTT 599

Query: 725 VKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           +++ I E   P      + T     A      ++     ++ L ++M  AADNL FE AA
Sbjct: 600 IEKAIGETNLP-----GSKTETGGSATADPEDEEAAARLIEELEERMGEAADNLEFELAA 654

Query: 785 RIRDEIKRLKSSPYFQGLD 803
            IRD I+ L+      G D
Sbjct: 655 DIRDRIRELREEYDLDGPD 673


>gi|269792460|ref|YP_003317364.1| excinuclease ABC, B subunit [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100095|gb|ACZ19082.1| excinuclease ABC, B subunit [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 671

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/660 (51%), Positives = 461/660 (69%), Gaps = 10/660 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + + + P+GDQP AI +L++G+ S    Q LLGVTGSGKT+TMA VIEA+QRP +
Sbjct: 1   MDRFVLNSPWPPAGDQPRAIEELVEGVRSGLSRQTLLGVTGSGKTYTMANVIEALQRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLYSEFK FFP N+V+YFVSYYDYYQPEAY+P  D YIEK++SINE+I++
Sbjct: 61  VLAHNKTLAAQLYSEFKEFFPKNSVQYFVSYYDYYQPEAYLPAQDVYIEKDASINEKIEK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT++L+ER D IVV+SVSCIYG+G  ++Y   I + K+GDS +++  LS LV   Y
Sbjct: 121 LRLSATKALIERRDVIVVASVSCIYGLGKKKNYEDAIFRFKVGDSFDRRSFLSKLVDNFY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+    GTFRV GD+++I+PS+  D A RV  F + IE++ E  P++G+ +      
Sbjct: 181 GRNDMAFEPGTFRVRGDTVDIYPSYS-DTALRVVFFDDQIEQVLEMDPVSGRILDRRSDG 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++   HYVT +  +  A++ I+ EL+ RL +L   G+LLEAQRLE R  YD+EML   G
Sbjct: 240 AVFPAQHYVTDKDRMGQAIRAIENELEERLGDLMSRGKLLEAQRLESRTRYDMEMLSEVG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L GR PGEPP TL +++PED LLF+DESH+TIPQ+ GMY GD  RK  L
Sbjct: 300 YCSGIENYSRHLEGRAPGEPPGTLMDFLPEDYLLFIDESHITIPQVRGMYNGDRARKEIL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPSC+DNRPLRF+E+     T I VSATPG +E+   Q  +VEQIIRPTG++DP
Sbjct: 360 VEHGFRLPSCLDNRPLRFDEFEEHMRTVIFVSATPGDYEMATSQ-RVVEQIIRPTGVLDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R ARTQVED+  E+     +G+R L+T LTKR +EDL +YL    I+V+Y+H ++ 
Sbjct: 419 MVEVRPARTQVEDLIGELRAEQDRGMRSLVTTLTKRSSEDLAQYLEGMGIKVKYIHGDLD 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER E+++DLR G F  LVG+NLLREG+D+PE  LVAIL+AD+EG+LRS  SLIQ IGR
Sbjct: 479 AFERAELLKDLRSGVFSTLVGVNLLREGIDLPEVSLVAILEADREGYLRSARSLIQMIGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN+  +VILY D +T S+++A++ET RRR  Q E+N++  I P+S+ + +  ++   L
Sbjct: 539 AARNMAGRVILYGDQVTDSMRVAMEETLRRRRIQEEYNRRMGIEPRSISKAVRSLLPQEL 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           + + ++     D        ++    L  L + M  A + L FEEAARIRD I  L+   
Sbjct: 599 VSEPSSARGRED--------REVSVDLDQLEEMMWRAVERLEFEEAARIRDRIASLRRGE 650


>gi|222481042|ref|YP_002567279.1| excinuclease ABC, B subunit [Halorubrum lacusprofundi ATCC 49239]
 gi|222453944|gb|ACM58209.1| excinuclease ABC, B subunit [Halorubrum lacusprofundi ATCC 49239]
          Length = 684

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/683 (49%), Positives = 453/683 (66%), Gaps = 7/683 (1%)

Query: 123 WTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182
            +   S    +        ++   + P+GDQP AIA+L++G  S    Q LLGVTGSGKT
Sbjct: 1   MSDADSPLSEDRPTVDRPLRVDAPFEPAGDQPEAIAELVEGFESGADKQTLLGVTGSGKT 60

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242
            T++ V E + +P +V+A NK LAAQLY EF+  FP NAVEYFVSYYDYYQPEAYV +TD
Sbjct: 61  NTVSWVAEELNQPTLVLAHNKTLAAQLYEEFRELFPDNAVEYFVSYYDYYQPEAYVEQTD 120

Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302
           T+I+KE SINE+IDR+RHSATRSLL RND IVV+SVS IYG+G  ++Y  M ++L++G+ 
Sbjct: 121 TFIDKEMSINEEIDRLRHSATRSLLTRNDVIVVASVSAIYGLGDPQNYRDMALRLEVGEE 180

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
           V ++ELL+ LV   Y+R D+   +GTFRV GD++EI+P +    A RV ++G +I+ + +
Sbjct: 181 VGREELLARLVDLNYERNDVDFTQGTFRVRGDTVEIYPMYG-RYAVRVELWGEEIDRMLK 239

Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
             P+ G+ +     + ++   HY  P   L  A+  I+  ++ R+   E++G L+ AQR+
Sbjct: 240 VDPMKGEVVSEEPAVMLHPAEHYSIPDDKLEQAIAEIQGLMEKRVGYFERQGDLVAAQRI 299

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482
           E+R T+D+EML   G C  IENYS ++  R  G+ P TL +Y P+D L  +DESH TIPQ
Sbjct: 300 EERTTFDIEMLREAGYCSGIENYSVHMDDRESGDAPYTLMDYFPDDFLTVIDESHQTIPQ 359

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542
           I G Y GD  RK +L E GFRLP+  DNRPL FEE+      T+ VSATP  +E E    
Sbjct: 360 IKGQYEGDKSRKDSLVENGFRLPTAYDNRPLTFEEFEEKSDRTLYVSATPSDYERETS-D 418

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
            I EQI+RPT LVDP VE+  A  QVED+ + +N   ++  R+L+T LTKRMAEDLTEY 
Sbjct: 419 RIAEQIVRPTHLVDPKVEVTEATGQVEDLLERVNERIERDERVLVTTLTKRMAEDLTEYF 478

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            E  I V YMH E  TLER EIIRDLRLG  DVLVGINLLREGLDIPE  LVAILDAD+E
Sbjct: 479 EEAGIDVAYMHDETDTLERHEIIRDLRLGNIDVLVGINLLREGLDIPEVSLVAILDADQE 538

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
           GFLRS T+L+QT+GRAARNVN +V+LYAD +T S++ AI+ET RRRE QL+HN++H    
Sbjct: 539 GFLRSTTTLVQTMGRAARNVNGEVVLYADRMTDSMEAAIEETQRRREIQLKHNEEHGYEA 598

Query: 723 QSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
            ++ + + E   P    D +  ++         S ++ KA +++L  +M  AA NL FE 
Sbjct: 599 ATIDKPVSETNLPGSKTDTSNVSVGDVE-----SAEEAKAQIEALEDRMDEAASNLEFEL 653

Query: 783 AARIRDEIKRLKSSPYFQGLDDS 805
           AA IRD I +L+ +    G DD 
Sbjct: 654 AADIRDRIAKLRRAFELDGGDDG 676


>gi|313617223|gb|EFR89711.1| excinuclease ABC subunit B [Listeria innocua FSL S4-378]
          Length = 587

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/589 (53%), Positives = 422/589 (71%), Gaps = 3/589 (0%)

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RHSAT +L 
Sbjct: 1   QLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRHSATAALF 60

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
           ER D I+++SVSCIYG+GS   Y +M+V L++G  + + +LL  LV  QY R DI   RG
Sbjct: 61  ERRDVIIIASVSCIYGLGSPVEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRNDIDFQRG 120

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            FRV GD +EIFP+  ++   R+  FG++IE I E   LTG+ I + E + I+  SH+VT
Sbjct: 121 RFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGDREHVSIFPASHFVT 180

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
               +  A+  IK EL+ RL  L  E +LLEAQRLEQR  YDLEM+E  G C  IENYSR
Sbjct: 181 RPDIMKKAIVNIKAELEDRLKVLRAENKLLEAQRLEQRTNYDLEMMEEMGYCSGIENYSR 240

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
           +L+ R  G  P TL +Y P+D  + +DESHVT+PQI GM+ GD  RK  L ++GFRLPS 
Sbjct: 241 HLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQIRGMFNGDQARKQMLVDHGFRLPSA 300

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +DNRPLR EE+       + +SATPG +ELE    +I EQIIRPTGL+DP VEIR  + Q
Sbjct: 301 LDNRPLRLEEFEKHINQIMFISATPGPYELEXXPDVI-EQIIRPTGLLDPIVEIRPIQGQ 359

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           ++D+ DEIN   ++  R+L+T LTK+M+EDLT YL E  ++V+Y+HSEVKTLERIEIIRD
Sbjct: 360 IDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLERIEIIRD 419

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LRLG +DV+VGINLLREG+D+PE  LVAILDADKEGFLRS+ SLIQT+GRAARN N +VI
Sbjct: 420 LRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAARNENGRVI 479

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           +YAD +T S++ +I ET RRR+ Q+E+N+KH I P++++++I  +I      D       
Sbjct: 480 MYADKMTDSMRNSISETERRRKIQIEYNEKHGITPKTIRKEIRGIIAATSAADEREAVKQ 539

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            D  +  +SKK+    ++ +  +M  AA  L+FE AA +RD +  +K+ 
Sbjct: 540 HDLSK--MSKKERDIFIEGMEHEMKEAAKALDFERAAELRDALLEIKAE 586


>gi|296272434|ref|YP_003655065.1| excinuclease ABC subunit B [Arcobacter nitrofigilis DSM 7299]
 gi|296096608|gb|ADG92558.1| excinuclease ABC, B subunit [Arcobacter nitrofigilis DSM 7299]
          Length = 657

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/661 (52%), Positives = 458/661 (69%), Gaps = 8/661 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++++ Y P+GDQP AI +L + I +  +   LLGVTGSGKT+TMAKVIE  Q+P +
Sbjct: 1   MAEFKVESKYSPAGDQPQAIEKLSESILAGNQYNTLLGVTGSGKTYTMAKVIEKTQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M  NK LAAQLYSEFK+FFP+N VEYF+SYYDYYQPEAY+PR+D +IEK+SSIN +++R
Sbjct: 61  IMTHNKTLAAQLYSEFKSFFPNNHVEYFISYYDYYQPEAYIPRSDLFIEKDSSINSELER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT SLL  +D IVV+SVS  YG+G+   Y  M+ +L +G    Q+ LL  LV   Y
Sbjct: 121 MRLSATASLLSFDDVIVVASVSANYGLGNPAEYKSMVQKLSVGFEYSQRTLLMKLVDMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR D    R  FRV GD I++FP++ +D   R+  F +++E IS    +T  K ++V+ +
Sbjct: 181 KRNDKFFDRADFRVNGDVIDVFPAYWQDEFIRIEFFADEVESISIHEYMTNVKQKDVQDV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY+ + +V     L TA+K I+EEL+ RL  L+ E RL+E QRL+QR+ +DLEM+E TG
Sbjct: 241 TIYSVNPFVVNSENLATAVKKIEEELEDRLAFLKAEDRLVEYQRLKQRVEFDLEMIEGTG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+LTG  PGE P ++ +Y     +D LL VDESHV++PQ  GM+  D  RK
Sbjct: 301 MCKGIENYARHLTGLEPGETPYSMMDYFEQIGKDFLLIVDESHVSLPQFRGMHAADKSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L EYGFRLPS +DNRPL F+E+    P  + VSATP   E      ++ EQIIRPTGL
Sbjct: 361 EVLVEYGFRLPSALDNRPLMFDEFINKAPHYLFVSATPNELETSMS-SVVAEQIIRPTGL 419

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +EI  +  QVE ++DEI   A +  R+L+TVLTK+MAE+LT Y  +  IRV+YMHS
Sbjct: 420 LDPTIEIMDSEFQVEKLHDEIKKVAAKNERVLVTVLTKKMAEELTAYYLDLGIRVKYMHS 479

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+ TLER+EIIR LRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLRSKTSLIQT
Sbjct: 480 EIDTLERVEIIRQLRLGEFDVLVGINLLREGLDIPETSLVAILDADKEGFLRSKTSLIQT 539

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GR ARN N +VIL+A  +T S+Q AID T +RRE Q  HNKKH I P S    + + + 
Sbjct: 540 MGRGARNQNGRVILFAKRVTDSMQFAIDVTNKRREVQEAHNKKHGITPTSTTRVLEDNLK 599

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
              LE+     + ++ +   +   + K  L  L K M  A+ +LNFEEA R+RDEI+++K
Sbjct: 600 ---LEEYDAVALKLE-KLDKMPAAERKKMLIELNKAMTKASKDLNFEEAIRLRDEIEKIK 655

Query: 795 S 795
            
Sbjct: 656 K 656


>gi|169837276|ref|ZP_02870464.1| excinuclease ABC subunit B [candidate division TM7 single-cell
           isolate TM7a]
          Length = 612

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/604 (54%), Positives = 431/604 (71%), Gaps = 2/604 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++++ Y P+GDQP AI  L  G+   ++ Q LLGVTGSGKTFTMA +I   Q P +V+A
Sbjct: 3   FKLKSKYKPTGDQPEAIKSLTAGLSRGDREQTLLGVTGSGKTFTMANIIANYQAPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP N V YFVSY+DYYQPEAY+  +DTYIEK+S IN++IDR+RH
Sbjct: 63  HNKTLAAQLYSEFKQFFPENEVHYFVSYFDYYQPEAYIASSDTYIEKDSKINDEIDRLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT +LL R+D I+V+SVSCIYGIGS ++Y+ M + +K+G+   Q + +  L   QY+R 
Sbjct: 123 AATTALLTRSDTIIVASVSCIYGIGSPDTYADMSINIKMGEHRRQDKFIRQLTDIQYQRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD ++IFP+ + D A+R+  FGN+++ I+   PLTG+       I I+
Sbjct: 183 DIDFDRGIFRVKGDVVDIFPAGM-DQAYRIEFFGNEVDRITRLNPLTGEITGEPRQISIF 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NSHY TP+  +  A++ IK+E + RL   E+  + LEAQRL QR  YDLEMLE TG  +
Sbjct: 242 PNSHYATPKEMIMKAIEGIKKEFEDRLAWFERNHKFLEAQRLSQRTKYDLEMLEQTGFVK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+ R  GE P TL +Y P+D LL VDESH+T+PQ+ GMY GD  RK  L E+
Sbjct: 302 GIENYSRYLSNREQGEQPATLIDYFPDDWLLLVDESHMTLPQVRGMYNGDRARKEVLVEH 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       I +SATPG +EL+     +  QIIRPTGL+DP ++
Sbjct: 362 GFRLPSALDNRPLKFEEFYNHINQAIYISATPGDYELQHS-STLARQIIRPTGLLDPEID 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    QV+D+  EI     +  R+L+T LTKRMAEDL+ YL E  I+  Y+HSE+ TLE
Sbjct: 421 IRPTEGQVDDLIKEIRDRINKKQRVLVTTLTKRMAEDLSTYLQELGIKTAYIHSEIDTLE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +I+RDLR G +DVLVGINLLREGLD+PE  LVAI+DADKEGFLRS+++LIQTIGRAAR
Sbjct: 481 RGDILRDLRSGVYDVLVGINLLREGLDLPEVSLVAIMDADKEGFLRSESALIQTIGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +V  KV++Y D IT+S++LAIDET  RR+ Q ++N ++NI P+ V + I E +  I+ + 
Sbjct: 541 HVEGKVLMYGDVITRSMRLAIDETNSRRKLQQQYNLENNITPRGVDKAIDEGLRAIIPQK 600

Query: 741 AATT 744
               
Sbjct: 601 DNEK 604


>gi|289449747|ref|YP_003474942.1| excinuclease ABC subunit B [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184294|gb|ADC90719.1| excinuclease ABC, B subunit [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 743

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/622 (52%), Positives = 433/622 (69%), Gaps = 3/622 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQPAAI  L  G  +  + Q LLGVTGSGKTFTMA +I  +QRP +V+A
Sbjct: 3   FKLHAPFQPTGDQPAAIEALTAGFTAGRRAQTLLGVTGSGKTFTMANIIARLQRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK L+ QL +EFK FFP NAVEYFVSYYD+YQPEAY+  TDTYIEK+S+IN++IDRMRH
Sbjct: 63  PNKTLSGQLCAEFKAFFPENAVEYFVSYYDFYQPEAYIAATDTYIEKDSAINDEIDRMRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SLLER D IVV+SVSCIYG+G   +Y  ++V L+ G +  + E++  LV  QY+R 
Sbjct: 123 SATASLLERRDVIVVASVSCIYGLGDPYTYKHLMVHLREGATKNRDEVIRELVDIQYQRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GDS++I+P   + +  R+S F ++I+ I+E   LTG+ +     + IY
Sbjct: 183 DYDCRRGTFRVRGDSLDIYPISSDKIILRISFFDDEIDRIAEVDALTGKTLALRNYVLIY 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T R  +  A+  I++EL  R+ EL  EG+++EA RLEQR  YD++ML  TG  +
Sbjct: 243 PASHYATSRAKIMGALSDIEQELTARVKELRAEGKIMEAYRLEQRTRYDMDMLLETGFVK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR PG PP TL ++ PED LL +DESHVT+PQI  MY GD  RK  L +Y
Sbjct: 303 GIENYSRFLDGRKPGVPPYTLLDFFPEDYLLMIDESHVTVPQIGAMYAGDRSRKEALVDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+  DNRPL+F E+      T+ VSATPG +E +  +  + EQ+IRPTGL+DPP+E
Sbjct: 363 GFRLPAAFDNRPLKFNEFERKMGQTLFVSATPGKYEAQHSE-FVQEQVIRPTGLLDPPIE 421

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I     Q+ED+   I      G R L+  LTK+M+EDLTE+     ++V+Y+HS++   E
Sbjct: 422 IHPVDGQIEDMLAAIKKKTAVGERTLVLTLTKKMSEDLTEFFSSAGLKVKYLHSDIANEE 481

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ I+++LR G+FDVLVGINLLREG+D+PE GL+AILDADKEGFLRS TSLIQ IGR AR
Sbjct: 482 RLRILKELREGEFDVLVGINLLREGIDLPEVGLLAILDADKEGFLRSATSLIQIIGRVAR 541

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN KVI+YAD+IT ++Q A+DET RRR  Q  +N+ HNI P +V ++I E+ D   +  
Sbjct: 542 NVNGKVIMYADSITAAMQNAVDETNRRRRIQATYNQIHNITPHTVVKEIRELPDTYSV-- 599

Query: 741 AATTNISIDAQQLSLSKKKGKA 762
            +      + ++ ++S+     
Sbjct: 600 TSPKASQREHERAAMSEPAMNE 621



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 755 LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           LS K+    LK L+K M  +A    +E+AA  RD I+ L
Sbjct: 703 LSPKEKAKLLKQLQKLMRQSATRTEYEQAAVYRDAIQSL 741


>gi|46199833|ref|YP_005500.1| excinuclease ABC subunit B [Thermus thermophilus HB27]
 gi|46197460|gb|AAS81873.1| excinuclease ABC subunit B [Thermus thermophilus HB27]
          Length = 668

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/650 (51%), Positives = 447/650 (68%), Gaps = 11/650 (1%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207
            P GDQP AIA L++ +   E+   LLG TG+GKT TMAKVIEA+ RPA+V+APNKILAA
Sbjct: 11  APKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAA 70

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           QL +EF+  FP NAVEYF+SYYDYYQPEAYVP  D YIEK++SIN +I+R+RHS TRSLL
Sbjct: 71  QLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLL 130

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
            R D IVV+SVS IYG+G    Y    + ++ G    ++ LL  L++  Y+R DI +  G
Sbjct: 131 TRRDVIVVASVSAIYGLGDPREYRARNLVVERGKPYPREALLERLLELGYQRNDIDLSPG 190

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            FR  G+ +EIFP++ E    RV +FG+++E I + +P+TG+++R +    ++  +HY++
Sbjct: 191 RFRARGEVLEIFPAY-ETEPIRVELFGDEVERILQVHPVTGERLRELPGFVLFPATHYLS 249

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
           P        +  KE    R+   E+ G +L A+RL++R  YDLEML   G+C  +ENY+R
Sbjct: 250 PEGLEEILKEIEKELW-ERVRYFEERGEVLYAERLKERTLYDLEMLRVMGTCPGVENYAR 308

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
           Y TG+ PGEPP TL +Y PED L+F+DESHVT+PQ+ GMYRGD+ RK TL +YGFRLPS 
Sbjct: 309 YFTGKAPGEPPYTLLDYFPEDFLVFLDESHVTVPQLMGMYRGDYARKKTLVDYGFRLPSA 368

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +DNRPLRFEE+       + VSATPG +EL    G +VEQIIRPTGL+DP V ++    Q
Sbjct: 369 LDNRPLRFEEFLERVSQVVFVSATPGPFELAHS-GRVVEQIIRPTGLLDPLVRVKPTENQ 427

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           + D+ + I   A +G R L+TVLT RMAE+LT +L E  IR RY+H E+   ER  +IRD
Sbjct: 428 ILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFERQALIRD 487

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LRLG +D LVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAARN   +V 
Sbjct: 488 LRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVW 547

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           LYAD +++++Q AI+ET RRR  Q  +N +H I P++V++++  VI P   E+A      
Sbjct: 548 LYADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEA------ 601

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
               +  LS +  +  +  L   M  AA+ L+FE AAR+RDEI+ L++  
Sbjct: 602 --PLEADLSGEDLRERIAELELAMWQAAEALDFERAARLRDEIRALEARL 649


>gi|7546428|pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
           Excision Repair Enzyme
 gi|1325924|dbj|BAA08653.1| UvrB [Thermus thermophilus]
          Length = 665

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/650 (51%), Positives = 448/650 (68%), Gaps = 11/650 (1%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207
            P GDQP AIA L++ +   E+   LLG TG+GKT TMAKVIEA+ RPA+V+APNKILAA
Sbjct: 9   SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAA 68

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           QL +EF+  FP NAVEYF+SYYDYYQPEAYVP  D YIEK++SIN +I+R+RHS TRSLL
Sbjct: 69  QLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLL 128

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
            R D IVV+SVS IYG+G    Y    + ++ G    ++ LL  L++  Y+R DI +  G
Sbjct: 129 TRRDVIVVASVSAIYGLGDPREYRARNLVVERGKPYPREVLLERLLELGYQRNDIDLSPG 188

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            FR  G+ +EIFP++ E    RV +FG+++E IS+ +P+TG+++R +    ++  +HY++
Sbjct: 189 RFRAKGEVLEIFPAY-ETEPIRVELFGDEVERISQVHPVTGERLRELPGFVLFPATHYLS 247

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
           P        +  KE    R+   E+ G +L AQRL++R  YDLEML   G+C  +ENY+R
Sbjct: 248 PEGLEEILKEIEKELW-ERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYAR 306

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
           Y TG+ PGEPP TL +Y PED L+F+DESHVT+PQ+ GMYRGD+ RK TL +YGFRLPS 
Sbjct: 307 YFTGKAPGEPPYTLLDYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSA 366

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +DNRPLRFEE+       + VSATPG +EL    G +VEQIIRPTGL+DP V ++    Q
Sbjct: 367 LDNRPLRFEEFLERVSQVVFVSATPGPFELAHS-GRVVEQIIRPTGLLDPLVRVKPTENQ 425

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           + D+ + I   A +G R L+TVLT RMAE+LT +L E  IR RY+H E+   +R  +IRD
Sbjct: 426 ILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRD 485

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LRLG +D LVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAARN   +V 
Sbjct: 486 LRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVW 545

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           LYAD +++++Q AI+ET RRR  Q  +N +H I P++V++++  VI P   E+A      
Sbjct: 546 LYADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEA------ 599

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
               +  LS +  +  +  L   M  AA+ L+FE AAR+RDEI+ L++  
Sbjct: 600 --PLEADLSGEDLRERIAELELAMWQAAEALDFERAARLRDEIRALEARL 647


>gi|9955068|pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
           Enzyme Uvrb From Thermus Thermophilus
          Length = 664

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/650 (51%), Positives = 448/650 (68%), Gaps = 11/650 (1%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207
            P GDQP AIA L++ +   E+   LLG TG+GKT TMAKVIEA+ RPA+V+APNKILAA
Sbjct: 8   SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAA 67

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           QL +EF+  FP NAVEYF+SYYDYYQPEAYVP  D YIEK++SIN +I+R+RHS TRSLL
Sbjct: 68  QLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLL 127

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
            R D IVV+SVS IYG+G    Y    + ++ G    ++ LL  L++  Y+R DI +  G
Sbjct: 128 TRRDVIVVASVSAIYGLGDPREYRARNLVVERGKPYPREVLLERLLELGYQRNDIDLSPG 187

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            FR  G+ +EIFP++ E    RV +FG+++E IS+ +P+TG+++R +    ++  +HY++
Sbjct: 188 RFRAKGEVLEIFPAY-ETEPIRVELFGDEVERISQVHPVTGERLRELPGFVLFPATHYLS 246

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
           P        +  KE    R+   E+ G +L AQRL++R  YDLEML   G+C  +ENY+R
Sbjct: 247 PEGLEEILKEIEKELW-ERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYAR 305

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
           Y TG+ PGEPP TL +Y PED L+F+DESHVT+PQ+ GMYRGD+ RK TL +YGFRLPS 
Sbjct: 306 YFTGKAPGEPPYTLLDYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSA 365

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +DNRPLRFEE+       + VSATPG +EL    G +VEQIIRPTGL+DP V ++    Q
Sbjct: 366 LDNRPLRFEEFLERVSQVVFVSATPGPFELAHS-GRVVEQIIRPTGLLDPLVRVKPTENQ 424

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           + D+ + I   A +G R L+TVLT RMAE+LT +L E  IR RY+H E+   +R  +IRD
Sbjct: 425 ILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRD 484

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LRLG +D LVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAARN   +V 
Sbjct: 485 LRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVW 544

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           LYAD +++++Q AI+ET RRR  Q  +N +H I P++V++++  VI P   E+A      
Sbjct: 545 LYADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEA------ 598

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
               +  LS +  +  +  L   M  AA+ L+FE AAR+RDEI+ L++  
Sbjct: 599 --PLEADLSGEDLRERIAELELAMWQAAEALDFERAARLRDEIRALEARL 646


>gi|289679886|ref|ZP_06500776.1| excinuclease ABC subunit B [Pseudomonas syringae pv. syringae FF5]
          Length = 558

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/559 (60%), Positives = 430/559 (76%), Gaps = 1/559 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +
Sbjct: 1   MSEFQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   R TFRV GD I+I+P+  +  A R+ +F +++E +S F PLTG+ IR +   
Sbjct: 181 TRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             Y  SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G
Sbjct: 241 TFYPKSHYVTPRETLIEAMENIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL
Sbjct: 301 YCNGIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G IVEQ++RPTGLVDP
Sbjct: 361 VEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVEQVVRPTGLVDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR A TQV+D+  EI+  A    R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ 
Sbjct: 420 QIEIRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDID 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGR
Sbjct: 480 TVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKS 696
           AARN+N + ILYAD IT S
Sbjct: 540 AARNLNGRAILYADRITGS 558


>gi|197294511|ref|YP_001799052.1| excinuclease ABC subunit B [Candidatus Phytoplasma australiense]
 gi|171853838|emb|CAM11787.1| Helicase subunit of the DNA excision repair complex [Candidatus
           Phytoplasma australiense]
          Length = 663

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/657 (48%), Positives = 453/657 (68%), Gaps = 7/657 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F+++TD  P+GDQP AI +L++G     K Q+LLG TG+GKTFT+A +I+ +Q+  +
Sbjct: 1   MNMFKLKTDLKPNGDQPQAIKKLVQGFEKGFKEQILLGATGTGKTFTIANIIQHLQQQTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LA QLY+E K  FP N VEYF+SYYDYYQPEAYV  +DTYIEK+S IN++ID+
Sbjct: 61  VIAHNKTLAGQLYNELKMMFPENKVEYFISYYDYYQPEAYVTSSDTYIEKDSKINDEIDQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RH+A  SLL R D IVV+SVSCIYG+G +E Y    + L+IGD  E+   L  LV+ ++
Sbjct: 121 LRHNAIVSLLNRKDVIVVASVSCIYGVGDLEDYQSSTLFLQIGDRFERNLFLKKLVELKF 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R ++   RGTFRV GD +EI PS  +++  R+  FG++IE I  F  L  + I N++  
Sbjct: 181 QRNEVNFGRGTFRVRGDIVEIIPSSHKEIGIRIIFFGDEIERIQLFELLNAKVIENLKVT 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           KI+  S Y      +  ++K I++ELK ++   EKE  L+ AQ+++ R ++DLEML   G
Sbjct: 241 KIFPASLYAVNAEKIKESIKRIRQELKEQIKHFEKEKNLVAAQKIKMRTSHDLEMLAEMG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L+ +  G+PP TL ++  ++ L  +DESHVT+PQI GMY GDF RK+ L
Sbjct: 301 HCSGIENYSRHLSLKEQGQPPSTLIDFFDKEFLTIIDESHVTVPQIKGMYFGDFSRKSNL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS +DNRPL+F E+       I +SATPG  E+E+ +  I+EQIIRPT ++DP
Sbjct: 361 VNYGFRLPSALDNRPLKFHEFEEKIDKIIYLSATPGDHEIER-KLPIIEQIIRPTFVLDP 419

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E++  + Q++D+Y EI    Q+  R+L+T LT  M+EDLT YL    I+V Y+HSE+K
Sbjct: 420 EIEVKRTQNQMDDLYFEIKKRIQKNQRVLITTLTINMSEDLTAYLKNLGIKVTYLHSEIK 479

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           +L+R+EI+RDLRLGK+D LVG+NLLREGLD+PE  LVAILDADK+GFLR++ SLIQTIGR
Sbjct: 480 SLQRLEILRDLRLGKYDCLVGVNLLREGLDLPEVSLVAILDADKQGFLRNQRSLIQTIGR 539

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV+ KVI+YAD  + +++LAI ET RRR+ Q ++N+K+ + P S+K+ I E +    
Sbjct: 540 AARNVDGKVIMYADNTSDAMKLAITETNRRRQIQKDYNQKNQLTPLSLKKNISESV---- 595

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                T + +   ++     K     +K L   M  AA+ L+FE+AA +RD I  L+
Sbjct: 596 --SIQTKDKATSKKEPMFDLKNINQQIKKLTNDMKKAAEKLDFEKAASLRDLILELE 650


>gi|55379581|ref|YP_137431.1| excinuclease ABC subunit B [Haloarcula marismortui ATCC 43049]
 gi|74579266|sp|Q5UYC8|UVRB_HALMA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|55232306|gb|AAV47725.1| UvrABC system protein B [Haloarcula marismortui ATCC 43049]
          Length = 686

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/657 (50%), Positives = 440/657 (66%), Gaps = 7/657 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AI QL  G       Q LLGVTGSGKT T++ V+E +Q+P +V+A
Sbjct: 19  FRVDAPFDPAGDQPEAIEQLASGYRQGMDRQTLLGVTGSGKTNTVSWVVEEIQQPTLVIA 78

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+  FP NAVEYFVSYYDYYQPEAYV +TDT+I+K++SIN++IDR+RH
Sbjct: 79  HNKTLAAQLYEEFRELFPDNAVEYFVSYYDYYQPEAYVEQTDTFIDKDASINDEIDRLRH 138

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLL R+D IVV+SVS IYG+G   +Y  M + L++G  +E+ ELL  LV   Y+R 
Sbjct: 139 SATRSLLTRDDVIVVASVSAIYGLGDPRNYIDMSLSLEVGQEIERDELLGQLVDLNYERN 198

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   +GTFRV GD++EI+P +    A RV  +G++I+ + +  PL G+         ++
Sbjct: 199 DVDFTQGTFRVRGDTLEIYPMYA-RYALRVEFWGDEIDRMLKVDPLEGEVKSEEPAALLH 257

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HY  P   L  A+  I++ L  R+   E++G  + AQR+E+R T+D+EM++ TG C 
Sbjct: 258 PAEHYSIPEQRLQRAIDEIEKLLDQRISYFERQGNHVAAQRIEERTTFDIEMMQETGYCS 317

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYS +L+ R  GE P TL +Y P+D L  VDESH T+PQI G + GD  RK +L E 
Sbjct: 318 GIENYSVHLSDRETGEAPYTLLDYFPDDFLTVVDESHQTLPQIRGQFEGDKSRKESLVEN 377

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLP+  DNRPL FEE+      T+ VSATPG +E +     +VEQI+RPT LVDP VE
Sbjct: 378 GFRLPTAFDNRPLTFEEFEEKTDQTLYVSATPGDYERDHSDQ-VVEQIVRPTHLVDPAVE 436

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I SA  QVED+ + I+    +  R+L+T LTKRMAEDLTEYL E  + V YMH E  TLE
Sbjct: 437 IASATGQVEDLLERIDDRVDRDERVLVTTLTKRMAEDLTEYLEESGVNVAYMHDETDTLE 496

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E+IR LRLG  DVLVGINLLREGLDIPE  LVAILDAD+EGFLRS+T+L+QT+GRAAR
Sbjct: 497 RHELIRSLRLGDIDVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTLVQTMGRAAR 556

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +V+LYAD  + ++Q AI ET RRR  Q ++N+ H   P ++++++ E   P     
Sbjct: 557 NVNGEVVLYADERSNAMQSAIQETQRRRRIQQQYNEDHGFEPTTIEKEVGETNLP----- 611

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            + T     +   +    +    ++ L ++M  AADNL FE AA IRD I+ L+   
Sbjct: 612 GSKTETGGISSDGASDADEATRQIEQLEERMQEAADNLEFELAADIRDRIRELREEF 668


>gi|157736872|ref|YP_001489555.1| excinuclease ABC subunit B [Arcobacter butzleri RM4018]
 gi|157698726|gb|ABV66886.1| excinuclease ABC, subunit B [Arcobacter butzleri RM4018]
          Length = 657

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/660 (52%), Positives = 464/660 (70%), Gaps = 8/660 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +DY PSGDQP AI  L   I +  +   LLGVTGSGKT+T+AKVIE +Q+P +
Sbjct: 1   MAKFKVVSDYEPSGDQPKAIEALSSSIKAGNQYNTLLGVTGSGKTYTIAKVIEKVQKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M  NK LAAQLYSEFK FFP+N VEYF+SYYDYYQPEAY+PR+D +IEK+SSIN++++R
Sbjct: 61  IMTHNKTLAAQLYSEFKQFFPNNHVEYFISYYDYYQPEAYIPRSDLFIEKDSSINDELER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT SLL  +D IV++SVS  YG+G+   Y  M+ ++++G +  QKE L  L++  Y
Sbjct: 121 LRLSATASLLSFDDVIVIASVSANYGLGNPSEYKAMVQRVEVGFNYSQKEFLLKLIEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR D    R  FRV GD I+IFP++ ED   RV  FG+++E I++   +T  K +++  +
Sbjct: 181 KRNDKFFDRADFRVNGDVIDIFPAYFEDEFIRVEFFGDEVESITKHEYITNTKTKDLNEV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY+ + +V  +  L  A+K I+EEL+ RL   +KE +L+E QRL+QR+ +DLEM+E TG
Sbjct: 241 IIYSVNPFVVTQENLGRAVKEIEEELERRLDFFQKEQKLVEYQRLKQRVEFDLEMIEGTG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+LTG+  GE P +L +Y     ED LL VDESHV++PQ  GM+  D  RK
Sbjct: 301 MCKGIENYARHLTGQKAGETPYSLLDYFEQMDEDFLLVVDESHVSLPQFRGMHAADRSRK 360

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L EYGFRLPS +DNRPL+F+E+    P  + VSATP   ELE    ++ EQIIRPTGL
Sbjct: 361 EVLVEYGFRLPSALDNRPLKFDEFINKAPHYVFVSATPNELELEMS-SVVAEQIIRPTGL 419

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP ++I  +  QVE ++DEI     +  R+L+TVLTK+MAE+L  Y  +  I+V+YMHS
Sbjct: 420 LDPIIDIIDSEFQVEKLHDEIKKVIAKNERVLVTVLTKKMAEELASYYADLGIKVKYMHS 479

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+  +ER +IIR+LRLG FDVL+GINLLREGLDIPE  LVAILDADKEGFLRSKTSLIQT
Sbjct: 480 EIDAIERNQIIRELRLGTFDVLIGINLLREGLDIPETSLVAILDADKEGFLRSKTSLIQT 539

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN N +VIL+A  IT S+Q AIDET RRR+ Q E NK+HNI P+S K K+ E + 
Sbjct: 540 IGRAARNENGRVILFAKRITASMQFAIDETNRRRKLQEEFNKEHNITPKSTKRKLDENLK 599

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               +D A     ++     +   + K  L  L KQM  AA +LNFEEA R+RDEI ++K
Sbjct: 600 LEEYDDVAWKKQKLE----KMPASERKKILIELNKQMKKAASDLNFEEAIRLRDEIAKIK 655


>gi|55981861|ref|YP_145158.1| excinuclease ABC subunit B [Thermus thermophilus HB8]
 gi|62299025|sp|Q56243|UVRB_THET8 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|55773274|dbj|BAD71715.1| excinuclease ABC subunit B (UvrB) [Thermus thermophilus HB8]
          Length = 665

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/650 (52%), Positives = 448/650 (68%), Gaps = 11/650 (1%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207
            P GDQP AIA L++ +   E+   LLG TG+GKT TMAKVIEA+ RPA+V+APNKILAA
Sbjct: 9   SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAA 68

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           QL +EF+  FP NAVEYF+SYYDYYQPEAYVP  D YIEK++SIN +I+R+RHS TRSLL
Sbjct: 69  QLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLL 128

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
            R D IVV+SVS IYG+G    Y    + ++ G    ++ LL  L++  Y+R DI +  G
Sbjct: 129 TRRDVIVVASVSAIYGLGDPREYRARNLVVERGKPYPREVLLERLLELGYQRNDIDLSPG 188

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            FR  G+ +EIFP++ E    RV +FG+++E IS+ +P+TG+++R +    ++  +HY++
Sbjct: 189 RFRAKGEVLEIFPAY-ETEPIRVELFGDEVERISQVHPVTGERLRELPGFVLFPATHYLS 247

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
           P        +  KE    R+   E+ G +L AQRL++R  YDLEML   G+C  +ENY+R
Sbjct: 248 PEGLEEILKEIEKELW-ERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYAR 306

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
           Y TG+ PGEPP TL +Y PED L+F+DESHVT+PQ+ GMYRGD+ RK TL +YGFRLPS 
Sbjct: 307 YFTGKAPGEPPYTLLDYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSA 366

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +DNRPLRFEE+       + VSATPG +EL    G +VEQIIRPTGL+DP V ++    Q
Sbjct: 367 LDNRPLRFEEFLERVSQVVFVSATPGPFELAHS-GRVVEQIIRPTGLLDPLVRVKPTENQ 425

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           + D+ + I   A +G R L+TVLT RMAE+LT +L E  IR RY+H E+   ER  +IRD
Sbjct: 426 ILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFERQALIRD 485

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LRLG +D LVGINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAARN   +V 
Sbjct: 486 LRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVW 545

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           LYAD +++++Q AI+ET RRR  Q  +N +H I P++V++++  VI P   E+A      
Sbjct: 546 LYADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEA------ 599

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
               +  LS +  +  +  L   M  AA+ L+FE AAR+RDEI+ L++  
Sbjct: 600 --PLEADLSGEDLRERIAELELAMWQAAEALDFERAARLRDEIRALEARL 647


>gi|110004147|emb|CAK98485.1| excinuclease abc subunit b protein [Spiroplasma citri]
          Length = 654

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/657 (46%), Positives = 434/657 (66%), Gaps = 3/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ ++Y P+GDQP AI +L   + + +K Q+LLG TG+GKTFTMA VIE  Q+P +VM
Sbjct: 1   MFKLTSNYLPAGDQPRAIEKLTTNLFANKKHQVLLGATGTGKTFTMANVIENYQKPTLVM 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLY E K  FP N VEYFVS +D+YQPEAY+P  D YI K++  N ++D MR
Sbjct: 61  AHNKTLAMQLYVELKEMFPENRVEYFVSNFDFYQPEAYLPGKDLYINKDARQNMELDMMR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA  +L  R D IVV+SV+ IYG      Y +  +Q+     + +K+L + LV   Y R
Sbjct: 121 LSAFNALTTRKDVIVVASVAAIYGAQDPNEYKKSFLQINRNQKISKKDLANFLVSSGYVR 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI +I GTF   GD I+I P        R+ +FG++I++++    +TG   + + T+ I
Sbjct: 181 NDIELIPGTFSAKGDVIKIVPGWNVKTFIRIDLFGDEIDDLAYIDGITGDVTQRLSTLTI 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +    Y+T    L  A+K I+ ELK+RL+ELE  G+++E QRL+QR  YDL++L  +G C
Sbjct: 241 FPAQDYITSPERLVEAIKRIEAELKVRLVELEVAGKIVELQRLKQRTEYDLDLLRESGIC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L  R  GE P TL ++  ED L  +DESH+++PQI  MY  D  RK TL  
Sbjct: 301 SGIENYSRHLDLREEGEAPYTLIDFFGEDFLTIIDESHMSLPQIRAMYNTDRSRKETLVN 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRL S +DNRPL F+E+N      I VSATPG +EL      +VEQIIRPTGL+DP V
Sbjct: 361 YGFRLKSALDNRPLNFDEFNQKLKNVIYVSATPGDYELGLVNNQVVEQIIRPTGLLDPTV 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E++S   Q++D+ +++ +  ++  R+ +T LT RM+EDLT YL E+N++V Y+HSE+KTL
Sbjct: 421 EVKSTVGQIDDIIEQVKIRRKKNERVFITTLTIRMSEDLTSYLQEQNVKVAYLHSELKTL 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +I+ DLR G +D +VG+NL+REG+DIPE  L+ ILDADK+GFLR++ SLIQTIGRAA
Sbjct: 481 ERSQILLDLRKGVYDCIVGVNLIREGIDIPEVSLICILDADKQGFLRNERSLIQTIGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN    VILYADT+++S++ A+ ET RRR+ Q  +N K++I P ++ + I +  + I  +
Sbjct: 541 RNAAGHVILYADTVSESMEKAMQETARRRQIQEAYNLKYHITPTTIIKNIRDYTN-IKRQ 599

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           D     I     +   + K+G   L+ LRK+M+ A+  L+FE AA +RD I  +++ 
Sbjct: 600 DDKLHKIKNKKSKEYKTAKEG--LLQDLRKEMYEASKKLDFERAAELRDIIIEIEAE 654


>gi|297518079|ref|ZP_06936465.1| excinuclease ABC subunit B [Escherichia coli OP50]
          Length = 564

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/562 (60%), Positives = 423/562 (75%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T
Sbjct: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRA
Sbjct: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLA 700
           ARNVN K ILY D IT S+  A
Sbjct: 543 ARNVNGKAILYGDKITPSMAKA 564


>gi|161528613|ref|YP_001582439.1| excinuclease ABC subunit B [Nitrosopumilus maritimus SCM1]
 gi|160339914|gb|ABX13001.1| excinuclease ABC, B subunit [Nitrosopumilus maritimus SCM1]
          Length = 650

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/666 (49%), Positives = 451/666 (67%), Gaps = 20/666 (3%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           + IT F++ ++Y P+GDQP AI QL+KG+  +  VQ LLGVTGSGKTF++A VI    + 
Sbjct: 2   EQITQFELASEYAPTGDQPQAIDQLVKGVKDK-TVQTLLGVTGSGKTFSVANVIARTGKN 60

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V++ NK LAAQLYSE K FFP N V YFVSYYDYYQPE+Y+P+TDTYIEK++ +NE+I
Sbjct: 61  TLVISHNKTLAAQLYSELKQFFPKNNVGYFVSYYDYYQPESYLPQTDTYIEKDTQVNEKI 120

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           +++R  AT  LL     I+VS+VSCIY +G+ + +  + + +  GD +++ EL+  L+  
Sbjct: 121 EKLRLEATAMLLSGEPTIIVSTVSCIYSLGNPQDWEDLAITVTAGDEIKRNELIRQLIDA 180

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           +Y+R D  +  G FRV GD+I+I P++ ED+  R+SMFG+++E+IS    ++ ++ + + 
Sbjct: 181 RYERNDTEVAPGNFRVKGDTIDITPAYSEDL-VRISMFGDEVEKISVLDHVSLKEKKKIN 239

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            +KI+   HY+  +     A++ IK+ELK RL EL +    LE QRLE R  YDLEM+E 
Sbjct: 240 QMKIFPAKHYLIAKDVRKKAVQSIKDELKKRLPELNE----LEKQRLEMRTKYDLEMIEE 295

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSR+  GR  G+    L ++  +D LL +DESHVT+PQ+ GMY+GD  RK 
Sbjct: 296 LGYCSGIENYSRHFDGRKAGQKAFCLMDFFGDDYLLVIDESHVTLPQLHGMYKGDHSRKK 355

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L  YGFRLPS  DNRPL+FEE+      TI VSATP  +E +     I EQ++RPTGL+
Sbjct: 356 ELVTYGFRLPSAYDNRPLKFEEFEEYVRNTIFVSATPADYEKKIS-SQIAEQLVRPTGLL 414

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VEIR  + Q++D+ +EIN       R+L+T LTKRMAEDL EYL ++ +RVRYMHSE
Sbjct: 415 DPEVEIRPTKNQMDDLIEEINKKVANSERVLVTTLTKRMAEDLAEYLSKKQVRVRYMHSE 474

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           ++ L+R E+IR LRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLR+ TSLIQT 
Sbjct: 475 IEGLQRTELIRQLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNFTSLIQTF 534

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN N  VI+YADT+T+S++ A++ET RRREKQ+++NK +NI P+++ + + E    
Sbjct: 535 GRAARNENGNVIMYADTVTQSMKNAMNETKRRREKQMKYNKDNNITPKTIIKSVPE---- 590

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                     ++        S       +  L  QM   +++L+FE A   RD IKRL+ 
Sbjct: 591 ---------QVTTLDDSKLKSTHDIATDIIDLEAQMKKYSEDLDFERAIECRDRIKRLEK 641

Query: 796 SPYFQG 801
               + 
Sbjct: 642 EIQIKN 647


>gi|225677199|ref|ZP_03788193.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590759|gb|EEH11992.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 588

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/586 (58%), Positives = 440/586 (75%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ T + P+GDQP AI  L+ G++S ++ Q+LLGVTGSGKTFTMA VI    RPA++MA
Sbjct: 3   FQIATRFQPAGDQPQAIDSLIAGLNSNKRDQVLLGVTGSGKTFTMANVIARTNRPALIMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E K  FPHNAVEYF+SYYDYYQPEAY+P+TDTYIEK+S+INE+I+ +R+
Sbjct: 63  HNKTLAAQLYEEMKGLFPHNAVEYFISYYDYYQPEAYLPQTDTYIEKDSAINERIEMLRY 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S   SLLER D IVV+SVSCIYG+GS ESY  MI+ L +G+ +   + LS+L   QYKR 
Sbjct: 123 STVCSLLERRDTIVVASVSCIYGLGSPESYRSMIIPLSVGNKIRINDFLSNLTDLQYKRS 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RG FRV GD ++IFPSH E+ AWR+S+FG++IEEISE   +TG   + V  I I+
Sbjct: 183 DARFERGYFRVRGDIVDIFPSHYENKAWRLSLFGDEIEEISEVDAITGNVTKGVNKITIF 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            NS+Y+TPR  L  A++ +K+EL  RL     + +++EA+RLEQR  +D+EM+ TTG C+
Sbjct: 243 PNSYYITPREALLQAIELVKKELHERLDYYYSQNKIVEAKRLEQRTNFDIEMMRTTGICK 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL G   G+PPPTLFEY+P++ +LFVDESHVT+PQ+  MY G+  RK  L +Y
Sbjct: 303 GIENYSRYLYGMEAGDPPPTLFEYLPKEVILFVDESHVTVPQVGAMYSGNEARKKKLIDY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F EW  +RP T+ +SATPG +EL +   + +EQ+IRPTGL DP   
Sbjct: 363 GFRLPSAFDNRPLKFGEWEGVRPQTVYISATPGKYELAKTSNVFIEQVIRPTGLTDPICI 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  ++Q++DV  E  +   +G  +L+T LTK+MAE+L EY+ E N++V Y+HS++  LE
Sbjct: 423 VKPIKSQIDDVIHEAQVTIGKGFCVLITTLTKKMAENLAEYMSELNMKVSYLHSDIGALE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII  LR  + DVLVG+NLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAAR
Sbjct: 483 RIEIICKLRSKEIDVLVGVNLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           N   +VILYAD IT S+  A+ ET RRR+KQ  HN  HNI P+++ 
Sbjct: 543 NAEGRVILYADKITGSLDRALKETERRRKKQEVHNILHNIVPKTII 588


>gi|212550673|ref|YP_002308990.1| excinuclease ABC subunit B [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548911|dbj|BAG83579.1| excinuclease ABC subunit B [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 672

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/661 (46%), Positives = 439/661 (66%), Gaps = 7/661 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI  L+  +      Q LLGVTGSGKTFTMA VI  +  PA++++
Sbjct: 3   FELVSNFRPAGDQPQAIHSLVSRVKQGVSYQTLLGVTGSGKTFTMANVIAQIGHPALILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+ +FK FFPHNAVEYFVSYYD+YQPEAY+P ++TYIEK+  IN +I+RMR 
Sbjct: 63  HNKTLAAQLFKDFKEFFPHNAVEYFVSYYDFYQPEAYLPISNTYIEKDFGINAEIERMRI 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           ++  +LL  R D ++VSS+SC+YG+G+ E Y + IV +K G ++ Q   L  LV   Y R
Sbjct: 123 ASVSALLSGRQDVVIVSSISCLYGMGNPEDYRENIVSIKRGMTMLQTIFLRKLVTGMYSR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             I    G FRV GD++++FP++  D+A RV  +G++IE+I  F P+ GQ +   E   I
Sbjct: 183 NQIDFTNGRFRVMGDTVDVFPAYS-DMALRVIFYGDEIEKICTFNPVNGQVLEIFEQYDI 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    + T +  +  A++ I+ +L   +  L   G++ EA+RL +R+ +D+EM+   G C
Sbjct: 242 YPAGLFTTTQDRVVVAVRQIEADLNQHICFLNGLGKIQEARRLHERVRFDIEMIRQLGYC 301

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRY  GR  G+ P  L +Y P + L+ +DESHVTIPQI  MY GD  RK  L E
Sbjct: 302 SGIENYSRYFDGRQQGDRPFCLIDYFPGNFLMIIDESHVTIPQIRAMYEGDQSRKMNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLP+ +DNRPL F+E+  + P  I +SATP  +EL  C+GII+EQ++RPTGL+DP +
Sbjct: 362 YGFRLPAALDNRPLTFDEFESITPQKIFISATPAEYELRMCEGIIIEQVVRPTGLLDPII 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+RS   Q++D+ +EI    ++  R L+T LTKRMAE+L  Y    NI+  Y+HS++K L
Sbjct: 422 EVRSTLHQIDDLMEEIRQRLEKNERTLVTTLTKRMAEELNSYFVNLNIQAAYIHSDIKAL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+ II + R G FDVL+G+NLLREGLD+PE  LVA+LDADKEGFLRS  SL Q  GRAA
Sbjct: 482 ERVGIIDEFRRGVFDVLIGVNLLREGLDLPEVSLVAVLDADKEGFLRSYRSLTQIAGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV-----ID 734
           RN+N KVI YAD +TKS++  ID+T +RREKQL +NK++ I P+ V++ +         +
Sbjct: 542 RNINGKVIFYADKMTKSMRNTIDDTNKRREKQLLYNKRNRIIPKQVQKSVSTSSLVLHTN 601

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L    A    ++  +  ++S  + +  +  +RK M  A+    F EAA  RDE+ +L+
Sbjct: 602 TKLNIKFAFNIETVFKEASTMSHIQLEKAINQIRKMMLFASKQFEFLEAAHYRDELIKLE 661

Query: 795 S 795
           +
Sbjct: 662 N 662


>gi|291277558|ref|YP_003517330.1| excinuclease ABC subunit B [Helicobacter mustelae 12198]
 gi|290964752|emb|CBG40607.1| excinuclease ABC subunit B [Helicobacter mustelae 12198]
          Length = 654

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/659 (47%), Positives = 446/659 (67%), Gaps = 9/659 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F +   Y P+GDQ  AI +L   I +  + Q L+GVTGSGKTF+MA +I  +  P ++M
Sbjct: 1   MFTLHAPYAPAGDQTQAIHKLSTFIKNGNQYQTLIGVTGSGKTFSMANIIARLNMPTLIM 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK L AQLYSEFK FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSINE ++R+R
Sbjct: 61  SHNKTLCAQLYSEFKGFFPKNHVEYFISHFDYYQPEAYIPRRDLFIEKDSSINEDLERLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +D IVV+SVS  YG+G+ E Y  MI ++++G    +  LL  LV   Y R
Sbjct: 121 LSATTSLLAYDDVIVVASVSANYGLGNPEEYLTMIEKVQVGQHTSRDHLLKKLVDMGYSR 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RG F V G+ ++IFP++ E    RV  FG++IE I  +  +  ++++ +++  I
Sbjct: 181 NDNFFERGNFAVSGECVDIFPAYNEVEFVRVEFFGDEIERIGIYDSIERREVKRLDSYVI 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA + ++        A++ I++EL+ RL   E + +++E  RL+ R  +DLEM+E++G C
Sbjct: 241 YAANQFIVSYERQKIALRNIEKELQERLAFFESQDKMIEYSRLKTRTEFDLEMMESSGIC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPE---DSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + IENY+R+LTG+  GE P +L +Y  +     L+ VDESHV++PQ  GMY GD  RK  
Sbjct: 301 RGIENYARHLTGKKEGETPYSLLDYFEQKGRPYLVIVDESHVSLPQFGGMYSGDRSRKEV 360

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EYGFRLPS +DNRPL+FEE+    P  + VSATP   ELE     + EQIIRPTGL+D
Sbjct: 361 LVEYGFRLPSALDNRPLKFEEFIHKAPHFLFVSATPAQKELELSGQNVAEQIIRPTGLLD 420

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P  E+R +  QV D+YDEI     +  R+L+T LTK+MAE+L++Y  E  ++++YMHSE+
Sbjct: 421 PLYEVRDSDNQVLDLYDEIKGVVAKKQRVLITTLTKKMAEELSKYYAELGLKIQYMHSEI 480

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
             +ER  +IR LRLG+FD+LVGINLLREGLD+PE  L+AI+DADKEGFLRS+TSL+QT+G
Sbjct: 481 DAIERNHLIRSLRLGEFDILVGINLLREGLDLPEVSLIAIMDADKEGFLRSETSLVQTMG 540

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARNV  +VI YA  IT+S+Q A++ T  RR+KQ+E+N  H I+P+SV+  + E +   
Sbjct: 541 RAARNVEGRVIFYAKKITQSMQRAMEITDYRRKKQMEYNALHQISPKSVQRNLEEEL--- 597

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                 ++ +    ++  + K + +  +K L K+M  +A  L+FEEAAR+RDEI R+KS
Sbjct: 598 ---KLESSAVLYKDKKAKIPKSERENIIKELNKKMLASAKLLDFEEAARLRDEIARIKS 653


>gi|332295640|ref|YP_004437563.1| UvrABC system protein B [Thermodesulfobium narugense DSM 14796]
 gi|332178743|gb|AEE14432.1| UvrABC system protein B [Thermodesulfobium narugense DSM 14796]
          Length = 684

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/666 (48%), Positives = 451/666 (67%), Gaps = 5/666 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++   + P+GDQ  AI QL++G+    K Q LLG TG+GKTFT+A VI  +++P +
Sbjct: 1   MSSFKLFEPFKPAGDQERAIDQLVEGVEKGYKYQTLLGATGTGKTFTIANVINRVKKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +MAPNK LAAQL SE + FFP NAVEYF+SYYDYYQPEAY+P+ D YIEK++SIN++IDR
Sbjct: 61  IMAPNKTLAAQLCSELRTFFPENAVEYFISYYDYYQPEAYIPQRDLYIEKDASINDEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            RHSATRSLLER D IVV+SVSCIY +G  E Y      ++ GD + + + +  L+   Y
Sbjct: 121 YRHSATRSLLEREDVIVVASVSCIYSLGQPEEYKTNSFVIREGDKLSRDDFIDQLIYMLY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D    R  FRV  + ++  PS  ++ A+RV    + I  I++ +P++ + +  +E++
Sbjct: 181 ERNDYEFKRNNFRVNINVVDFIPS-FDEYAYRVRFDEDSIRSITKLHPVSLEPVEKIESL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH++     L  A+  I+ EL+ R+   E  G+++EA+R+EQR  YD+EML+T G
Sbjct: 240 WIFPASHFILRDEKLKRAIDSIRVELEERIKYFESLGKVVEAKRIEQRTLYDIEMLQTIG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ +ENYSR+ T R PGEPP TL +Y P+D L+ +DESH+++PQI GMYRGD  RK  L
Sbjct: 300 YCKGVENYSRHFTFRKPGEPPITLLDYFPKDFLVILDESHLSVPQIRGMYRGDEARKKNL 359

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            ++GFRLPS  DNRPLRFEE+       I +SATP S+E E     IVEQIIRPTG++DP
Sbjct: 360 IDFGFRLPSAYDNRPLRFEEFIEKANQIIFMSATPASFEKENS-SQIVEQIIRPTGILDP 418

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            VE+R   +QV D  +E    A++G R L+T LTKR+AEDL  YL +  I+  Y+HSE  
Sbjct: 419 IVEVRDFESQVNDSINETRENAKRGFRTLITTLTKRLAEDLANYLIQEGIKAYYLHSEQD 478

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            +ER++++ +LRLGK+DV+VGINLLREGLD+PE   V ILDADKEGFLRS TSLIQTIGR
Sbjct: 479 AIERLDVLHNLRLGKYDVVVGINLLREGLDLPEVTRVLILDADKEGFLRSSTSLIQTIGR 538

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARNV SKVILYA  IT+S++ AIDET RRR+ Q+E+N KHNI P S+ + I +++D   
Sbjct: 539 AARNVESKVILYASKITESMREAIDETNRRRKIQMEYNLKHNITPTSISKPISDIVDRDS 598

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             ++    +    +      +  +  +   R +M   A    FEEAA+ RD +K LK+  
Sbjct: 599 EGNSIEEELRSIIKSNKNDLELTEKEI---RTKMIEYAKEWKFEEAAKYRDLLKLLKNIF 655

Query: 798 YFQGLD 803
             + +D
Sbjct: 656 EDKEVD 661


>gi|312880241|ref|ZP_07740041.1| Excinuclease ABC subunit B [Aminomonas paucivorans DSM 12260]
 gi|310783532|gb|EFQ23930.1| Excinuclease ABC subunit B [Aminomonas paucivorans DSM 12260]
          Length = 672

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/650 (51%), Positives = 448/650 (68%), Gaps = 12/650 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++  D+ P+GDQP AI  L++G       Q LLGVTGSGKT+TMA+V++ +QRP +VMA
Sbjct: 5   FRLVADWDPAGDQPEAIEALVRGFEGGLSRQTLLGVTGSGKTYTMAQVVQRLQRPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAV+YFVSYYDYYQPEAY+P  D YIEK++SINE+I+++R 
Sbjct: 65  HNKTLAAQLYSEFKGFFPENAVQYFVSYYDYYQPEAYMPAQDLYIEKDASINERIEKLRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T++LLER D +VV+SVSCIYG+G  ++Y + I + ++G++  +K  L  L+   Y+R 
Sbjct: 125 STTKALLERRDVLVVASVSCIYGLGKRKNYEEAIFRFQVGETWPRKRFLERLLANYYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+    G FRV GD +EI+P++  D A RVS   ++I+ I E  P++G+ +   +   ++
Sbjct: 185 DVAFTPGVFRVRGDLLEIYPAYS-DTALRVSFLDDEIDRIDEIDPVSGKTLLRKDRGAVF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HYVT    +  AM+ I++ELK  L +L   GRLLEAQRLE R  YD+EML+  G C 
Sbjct: 244 PAQHYVTSPDAIAQAMEKIEQELKAHLEDLRSRGRLLEAQRLESRTRYDMEMLQEVGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L GR  GE P TL ++ P+D LLF+DESH+TIPQI GMY GD  RK  L E+
Sbjct: 304 GIENYSRFLDGREVGETPGTLMDFFPQDYLLFLDESHITIPQIRGMYNGDRARKEVLVEH 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPLRFEE+       + VSATPG +E++     +VEQ++RPTG+++P VE
Sbjct: 364 GFRLPSCLDNRPLRFEEFESFMGQALFVSATPGDYEIQTS-ARVVEQLVRPTGVLEPQVE 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D+ +E+ L A++G R L+T LTKR AEDL EY  E  I+VRY+HSE+ T E
Sbjct: 423 VRPATGQVDDLLEELRLVAERGDRALVTTLTKRSAEDLAEYFAELGIQVRYIHSELDTFE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  +++DLR G F VLVG+NLLREGLD+PE  LVAIL+AD+EG+LRS  SLIQ IGRAAR
Sbjct: 483 RAALLKDLRQGVFGVLVGVNLLREGLDLPEVSLVAILEADREGYLRSHRSLIQMIGRAAR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   KVILY D +T S++LA++ET RRR  Q   N++  I P +V+++I  ++   LLED
Sbjct: 543 NEAGKVILYGDRVTDSMRLAVEETQRRRRVQETFNRERGIVPTTVRKEIKSLLPQELLED 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                                   K L + M  A + L+FEEAA +RD+I
Sbjct: 603 QEERTPQRKGSVDR----------KELERMMWAAVERLDFEEAAALRDQI 642


>gi|227875382|ref|ZP_03993523.1| excision endonuclease subunit B [Mobiluncus mulieris ATCC 35243]
 gi|227843936|gb|EEJ54104.1| excision endonuclease subunit B [Mobiluncus mulieris ATCC 35243]
          Length = 743

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/616 (52%), Positives = 446/616 (72%), Gaps = 2/616 (0%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
             +  ++   FQ+ ++Y P+GDQP AIA+L + I++ E+  +LLG TG+GKT T A +IE
Sbjct: 8   PRDLVENPIPFQVISNYQPAGDQPQAIAELAERINAGEQDVVLLGATGTGKTATTAWLIE 67

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
           ++QRP +V+ PNK LAAQL +EF+   P+NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SS
Sbjct: 68  SIQRPTLVLEPNKTLAAQLTAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSS 127

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN++++R+RHSAT SLL R D +VVSSVSCIYG+G+ E Y    + L  G  + + +L+ 
Sbjct: 128 INDEVERLRHSATNSLLTRRDVVVVSSVSCIYGLGTPEEYVSRGIHLSRGMEIGRDDLIR 187

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RG FRV GD+I+I P + E++  RV  FG++I+ ++  +P+TG+ 
Sbjct: 188 RFVGMQYNRNDVDFTRGNFRVRGDTIDIIPMY-EELGVRVEFFGDEIDTLAVLHPVTGEV 246

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +  V+ I ++  SHYV     +  AM  I+ E++ R      +G+LLE QRL  R TYDL
Sbjct: 247 LHEVDEIYVFPASHYVAGPERMERAMAGIEAEMESRCKWFHDQGKLLEEQRLRMRTTYDL 306

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   G C  IENYS ++ GR PGEPP TL +Y P+D LL +DESHVT+PQI GM+ GD
Sbjct: 307 EMMRQIGICAGIENYSLHIDGRQPGEPPHTLLDYFPDDFLLVIDESHVTVPQIGGMFEGD 366

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL+++E+      T+ +SATPG +EL +  G +VEQIIR
Sbjct: 367 MSRKRTLVDFGFRLPSALDNRPLKWDEFQARIGQTVYLSATPGDYELGRSDG-VVEQIIR 425

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++    Q++D+ +EI +  ++  R+L+T LTKRMAEDL++YL ER I+V 
Sbjct: 426 PTGLVDPKIVVKPVEGQIDDLMEEIRVRVERDERVLVTTLTKRMAEDLSQYLAERGIKVE 485

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R+LR G FDVLVGINLLREGLD+PE  LVAILDADK+GFLRS  S
Sbjct: 486 YLHSDVDTLRRVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSTKS 545

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD ++ S++ AIDET RRR KQL  N++H I+P+ +++KI 
Sbjct: 546 LIQTIGRAARNVHGEVHMYADAVSDSMRAAIDETERRRAKQLAFNQEHGIDPKPLQKKIS 605

Query: 731 EVIDPILLEDAATTNI 746
           +V D +  ED  T  +
Sbjct: 606 DVTDMLAREDIDTEQL 621



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 30/71 (42%)

Query: 724 SVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
           +++    +    +       T  +             +A L+ L  QMH AA  + FE A
Sbjct: 662 TIRNAGADHTGTVRANGGDPTRGTAKVGAKGEEIVDLEALLRELSTQMHQAASEMRFELA 721

Query: 784 ARIRDEIKRLK 794
           AR+RDEI  LK
Sbjct: 722 ARLRDEIVDLK 732


>gi|260890126|ref|ZP_05901389.1| hypothetical protein GCWU000323_01288 [Leptotrichia hofstadii
           F0254]
 gi|260860149|gb|EEX74649.1| excinuclease ABC subunit B [Leptotrichia hofstadii F0254]
          Length = 635

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/635 (54%), Positives = 464/635 (73%), Gaps = 5/635 (0%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           ++ +      Q+LLGVTGSGKTFT+A VIE + RPA++MAPNK LAAQLY+E+K FFP N
Sbjct: 1   MENLEDGITDQILLGVTGSGKTFTVANVIEKINRPALIMAPNKTLAAQLYNEYKQFFPEN 60

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
           AVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN++ID++RH+AT +LL R D I+V+SVS 
Sbjct: 61  AVEYFVSYYDYYQPEAYIMQTDTYIEKDSSINDEIDKLRHAATAALLNRRDVIIVASVSA 120

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           IYG+GS E+Y +  + + +    E+ EL+  L+  +Y+R DI   RG FRV GD +++ P
Sbjct: 121 IYGLGSPEAYKKRSIPIDVETGFERNELIKRLISLRYERNDIAFERGKFRVKGDILDLHP 180

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
           S+ +D  +R   FG+D+E ISE   LTGQKIRN++ I I   +HY+T   T     + IK
Sbjct: 181 SY-QDTGYRFEFFGDDLESISEINTLTGQKIRNIKRITIMPATHYLTNEDT-KVMFEAIK 238

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
           +E++ R+   +KEG+LLEAQR+EQR  YDLEM+E  G C+ +ENYSRYLTG++ GE P T
Sbjct: 239 KEMEERVHFFQKEGKLLEAQRIEQRTKYDLEMIEEIGYCKGVENYSRYLTGKSEGEAPDT 298

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           L +Y PED ++F+DESH+++PQI+GMY+GD  RK +L + GFRLPS  DNRPL+FEE+  
Sbjct: 299 LIDYFPEDLVVFLDESHISVPQINGMYKGDRARKQSLIDNGFRLPSAYDNRPLKFEEFFE 358

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             P  + +SATP  +ELE   G +VEQ++RPTG+++P ++IR  + Q++D+ DEI     
Sbjct: 359 KVPQVVYISATPSDYELEHSNGEVVEQLVRPTGIIEPSIDIRETKNQIDDLMDEIKTRTA 418

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +  RIL+T LTK+MAE+LT+Y  E  I+V+YMHS++ TLER EIIR LR G+FDVLVGIN
Sbjct: 419 RKERILVTTLTKKMAEELTDYYLEYGIKVKYMHSDIDTLERTEIIRGLRKGEFDVLVGIN 478

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           LLREGLDIPE  LVAIL+ADKEG+LRS+ SLIQT+GRAARNV   VILYAD IT S+Q A
Sbjct: 479 LLREGLDIPEVSLVAILEADKEGYLRSRRSLIQTMGRAARNVEGHVILYADRITGSMQEA 538

Query: 701 IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG 760
           IDE  RRRE Q ++N ++NINP+S+  +I E I    +E     N +I   +   S+K  
Sbjct: 539 IDEVNRRREVQEKYNLENNINPKSIVREIAESIVDYEIEKENEANKAI---KQYKSEKDV 595

Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +  +K L KQ+   A+ LNFEEA ++RD++  LK 
Sbjct: 596 EKEIKKLDKQIKKLAEELNFEEAIKLRDKMNELKK 630


>gi|329765462|ref|ZP_08257038.1| excinuclease ABC subunit B [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137900|gb|EGG42160.1| excinuclease ABC subunit B [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 650

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/660 (50%), Positives = 453/660 (68%), Gaps = 20/660 (3%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +++ P+GDQP AI  L++G+  R+ +Q LLGVTGSGKTF++A VI    +  +V++
Sbjct: 7   FELVSEFEPTGDQPQAIDLLVEGVKKRQ-IQTLLGVTGSGKTFSIANVIARTGKNTLVIS 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K FFP N V YFVSYYDYYQPE+Y+P+TDTYIEK++ INE+I+++R 
Sbjct: 66  HNKTLAAQLYSELKQFFPKNNVGYFVSYYDYYQPESYLPQTDTYIEKDTQINEKIEKLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            AT  LL     I+VS+VSCIY +G+ + +  + + +  GD +++ +L+   +  +Y+R 
Sbjct: 126 EATAMLLSGEPTIIVSTVSCIYSLGNPKDWDDLAITINSGDVIKRSDLIKKFIDARYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I  G FRV GD+I+I P++ ED+  R+SMFG+D+E+I     ++ ++ R +  IKI+
Sbjct: 186 DTEIAPGNFRVKGDTIDIIPAYSEDI-VRISMFGDDVEKIMLLDNISLKEKRKINQIKIF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HY+  +     A++ IK+EL+ RL EL +    LE QRLE R  YDLEM+E  G C 
Sbjct: 245 PAKHYLIAKDVREKAVRSIKDELEKRLPELNE----LEKQRLEMRTKYDLEMIEELGYCS 300

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+  GRNPGE    L ++  +D LL +DESHVT+PQ+ GMY+GD+ RK  L  Y
Sbjct: 301 GIENYSRHFDGRNPGEKAFCLMDFFGDDYLLVIDESHVTLPQLHGMYKGDYSRKKELVTY 360

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+FEE+      TI VSATP  +E +     I EQ++RPTGL+DP VE
Sbjct: 361 GFRLPSAYDNRPLKFEEFEGYLKNTIFVSATPSEYEKKISAQ-IAEQLVRPTGLLDPVVE 419

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + Q++D+  EI   A +  R+L+T LTKRMAEDL EYL ++ +RVRYMHSE++ L+
Sbjct: 420 IRPTKDQMDDLIQEIAKRAVKNERVLVTTLTKRMAEDLAEYLSKKQVRVRYMHSEIEGLQ 479

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E+IR LRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLR+ TSLIQT GRAAR
Sbjct: 480 RTELIRQLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNFTSLIQTFGRAAR 539

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN  VI+YAD ITKS+  AIDET RR+EKQ+++NK+HNI PQ++ + + E I       
Sbjct: 540 NVNGSVIMYADNITKSMSNAIDETNRRKEKQIQYNKEHNITPQTIIKSVPEQI------- 592

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
                 ++D  +L  S       +  L  QM   ++ L+FE A   RD IKRL+    F+
Sbjct: 593 -----TTLDESKLK-SIHDMTTDIIELESQMKKYSEELDFERAIECRDRIKRLEKEIKFK 646


>gi|307700874|ref|ZP_07637899.1| excinuclease ABC, B subunit [Mobiluncus mulieris FB024-16]
 gi|307613869|gb|EFN93113.1| excinuclease ABC, B subunit [Mobiluncus mulieris FB024-16]
          Length = 743

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/616 (52%), Positives = 445/616 (72%), Gaps = 2/616 (0%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
             +  ++   FQ+ ++Y P+GDQP AIA+L + I++ E+  +LLG TG+GKT T A +IE
Sbjct: 8   PRDLVENPIPFQVISNYQPAGDQPQAIAELAERINAGEQDVVLLGATGTGKTATTAWLIE 67

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
           ++QRP +V+ PNK LAAQL +EF+   P NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SS
Sbjct: 68  SIQRPTLVLEPNKTLAAQLTAEFRELLPKNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSS 127

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN++++R+RHSAT SLL R D +VVSSVSCIYG+G+ E Y    + L  G  + + +L+ 
Sbjct: 128 INDEVERLRHSATNSLLTRRDVVVVSSVSCIYGLGTPEEYVSRGIHLSRGMEIGRDDLIR 187

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RG FRV GD+I+I P + E++  RV  FG++I+ ++  +P+TG+ 
Sbjct: 188 RFVGMQYNRNDVDFTRGNFRVRGDTIDIIPMY-EELGVRVEFFGDEIDTLAVLHPVTGEV 246

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +  V+ I ++  SHYV     +  AM  I+ E++ R      +G+LLE QRL  R TYDL
Sbjct: 247 LHEVDEIYVFPASHYVAGPERMERAMAGIEAEMEQRCRWFHDQGKLLEEQRLRMRTTYDL 306

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   G C  IENYS ++ GR PGEPP TL +Y P+D LL +DESHVT+PQI GM+ GD
Sbjct: 307 EMMRQIGICAGIENYSLHIDGRQPGEPPHTLLDYFPDDFLLVIDESHVTVPQIGGMFEGD 366

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL+++E+      T+ +SATPG +EL +  G +VEQIIR
Sbjct: 367 MSRKRTLVDFGFRLPSALDNRPLKWDEFQARIGQTVYLSATPGDYELGRSDG-VVEQIIR 425

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++    Q++D+ +EI +  ++  R+L+T LTKRMAEDL++YL ER I+V 
Sbjct: 426 PTGLVDPKIVVKPVEGQIDDLMEEIRVRVERDERVLVTTLTKRMAEDLSQYLAERGIKVE 485

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R+LR G FDVLVGINLLREGLD+PE  LVAILDADK+GFLRS  S
Sbjct: 486 YLHSDVDTLRRVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSTKS 545

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD ++ S++ AIDET RRR KQL  N++H I+P+ +++KI 
Sbjct: 546 LIQTIGRAARNVHGEVHMYADAVSDSMRAAIDETERRRAKQLAFNQEHGIDPKPLQKKIS 605

Query: 731 EVIDPILLEDAATTNI 746
           +V D +  ED  T  +
Sbjct: 606 DVTDMLAREDIDTEQL 621



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 23/36 (63%)

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             +A L+ L  QMH AA  + FE AAR+RDEI  LK
Sbjct: 697 DLEALLRELSTQMHQAASEMRFELAARLRDEIVDLK 732


>gi|269977363|ref|ZP_06184336.1| excinuclease ABC subunit B [Mobiluncus mulieris 28-1]
 gi|269934666|gb|EEZ91227.1| excinuclease ABC subunit B [Mobiluncus mulieris 28-1]
          Length = 743

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/616 (52%), Positives = 445/616 (72%), Gaps = 2/616 (0%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
             +  ++   FQ+ ++Y P+GDQP AIA+L + I++ E+  +LLG TG+GKT T A +IE
Sbjct: 8   PRDLVENPIPFQVISNYQPAGDQPQAIAELAERINAGEQDVVLLGATGTGKTATTAWLIE 67

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
           ++QRP +V+ PNK LAAQL +EF+   P NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SS
Sbjct: 68  SIQRPTLVLEPNKTLAAQLTAEFRELLPKNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSS 127

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN++++R+RHSAT SLL R D +VVSSVSCIYG+G+ E Y    + L  G  + + +L+ 
Sbjct: 128 INDEVERLRHSATNSLLTRRDVVVVSSVSCIYGLGTPEEYVSRGIHLSRGMEIGRDDLIR 187

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RG FRV GD+I+I P + E++  RV  FG++I+ ++  +P+TG+ 
Sbjct: 188 RFVGMQYNRNDVDFTRGNFRVRGDTIDIIPMY-EELGVRVEFFGDEIDTLAVLHPVTGEV 246

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +  V+ I ++  SHYV     +  AM  I+ E++ R      +G+LLE QRL  R TYDL
Sbjct: 247 LHEVDEIYVFPASHYVAGPERMERAMAGIEAEMESRCKWFHDQGKLLEEQRLRMRTTYDL 306

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   G C  IENYS ++ GR PGEPP TL +Y P+D LL +DESHVT+PQI GM+ GD
Sbjct: 307 EMMRQIGICAGIENYSLHIDGRQPGEPPHTLLDYFPDDFLLVIDESHVTVPQIGGMFEGD 366

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL+++E+      T+ +SATPG +EL +  G +VEQIIR
Sbjct: 367 MSRKRTLVDFGFRLPSALDNRPLKWDEFQARIGQTVYLSATPGDYELGRSDG-VVEQIIR 425

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++    Q++D+ +EI +  ++  R+L+T LTKRMAEDL++YL ER I+V 
Sbjct: 426 PTGLVDPKIVVKPVEGQIDDLMEEIRVRVERDERVLVTTLTKRMAEDLSQYLAERGIKVE 485

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R+LR G FDVLVGINLLREGLD+PE  LVAILDADK+GFLRS  S
Sbjct: 486 YLHSDVDTLRRVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSTKS 545

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD ++ S++ AIDET RRR KQL  N++H I+P+ +++KI 
Sbjct: 546 LIQTIGRAARNVHGEVHMYADAVSDSMRAAIDETERRRAKQLAFNQEHGIDPKPLQKKIS 605

Query: 731 EVIDPILLEDAATTNI 746
           +V D +  ED  T  +
Sbjct: 606 DVTDMLAREDIDTEQL 621



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%)

Query: 724 SVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
           +++    +    +      TT  +             +A L+ L  QMH AA  + FE A
Sbjct: 662 TIRNAGADHTGTVRANGGDTTRGTAKVGAKGEEIVDLEALLRELSTQMHQAASEMRFELA 721

Query: 784 ARIRDEIKRLK 794
           AR+RDEI  LK
Sbjct: 722 ARLRDEIVDLK 732


>gi|260654700|ref|ZP_05860190.1| excinuclease ABC subunit B [Jonquetella anthropi E3_33 E1]
 gi|260630716|gb|EEX48910.1| excinuclease ABC subunit B [Jonquetella anthropi E3_33 E1]
          Length = 681

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/658 (50%), Positives = 447/658 (67%), Gaps = 10/658 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++Q  + P+GDQP AI++L +G+   ++ Q LLGVTGSGKTFT+A VI+  QRP +V+A
Sbjct: 6   FRLQAPWPPAGDQPGAISRLTEGLLRGDRCQTLLGVTGSGKTFTVASVIQNFQRPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAV YFVSYYDYYQPEAY+P +D YIEK++SIN+QI+RMR 
Sbjct: 66  HNKTLAAQLYSEFKGFFPDNAVHYFVSYYDYYQPEAYLPGSDVYIEKDASINDQIERMRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T+SL+ER D IVV+SVSCIYG+G  E+Y   +V   +G+  +++  L SL+K  Y+R 
Sbjct: 126 ATTKSLIERRDVIVVASVSCIYGMGKRENYEDAVVSFSVGERWKRRAFLESLMKSYYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+ +  G FRV GD +E++P +  D + R S F  ++E I E  P++G+ +   E + ++
Sbjct: 186 DLDLSPGKFRVRGDVVELYPVYS-DKSLRFSFFDEELESIDEVEPISGKTVTRRERVSVF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HYVT    +  AM  I+ EL+ RL     +   LEAQRLE R  YD+EML   G C 
Sbjct: 245 PAQHYVTSDNAVAEAMVKIRAELEERLEFFRSQKSFLEAQRLESRTKYDMEMLAEAGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL GR  GE P TL ++ P D L+ VDESH+T+PQ+ GM+ GD  RK  L E+
Sbjct: 305 GIENYSRYLDGREAGEQPGTLLDFFPPDFLMVVDESHITLPQVRGMFNGDRARKEVLVEH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPL++ E+       I  SATPG WE+++    +VEQ+IRPTG+VDP V 
Sbjct: 365 GFRLPSCLDNRPLKWNEFENFMQRVICCSATPGDWEIQRS-SQVVEQVIRPTGVVDPEVF 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  QV+D+ DEI  A + G R+L+T LTK+MAEDL EY  +  ++ +Y+HSE+   E
Sbjct: 424 VRPASGQVDDLLDEIARATEAGGRVLVTTLTKKMAEDLAEYAGKLGVKAKYIHSELDAFE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R ++IR+LR G  DVLVGINLLREG+D+PE  LVAILDAD+EGFLRS  SLIQ +GRAAR
Sbjct: 484 RADLIRELREGSVDVLVGINLLREGIDMPEVTLVAILDADREGFLRSYRSLIQIMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N  S+VILYADT T SI+ A  E++RRR+KQLE NK H I P++V + +  ++ P L  +
Sbjct: 544 NTESRVILYADTQTDSIRQACAESSRRRQKQLEFNKAHGIVPRTVSKSVSRLL-PELEFE 602

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
            A    +  A++  +          ++ K M  +   L FE+AA +RD +  L++   
Sbjct: 603 EAPEAAASKAEEEQMD-------CATIEKLMWESVKKLQFEKAAMLRDRLAELRNQEI 653


>gi|306818695|ref|ZP_07452417.1| excision endonuclease subunit UvrB [Mobiluncus mulieris ATCC 35239]
 gi|304648381|gb|EFM45684.1| excision endonuclease subunit UvrB [Mobiluncus mulieris ATCC 35239]
          Length = 743

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/616 (52%), Positives = 444/616 (72%), Gaps = 2/616 (0%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
             +  ++   FQ+ ++Y P+GDQP AI +L + I++ E+  +LLG TG+GKT T A +IE
Sbjct: 8   PRDLVENPIPFQVISNYQPAGDQPQAIKELAERINAGEQDVVLLGATGTGKTATTAWLIE 67

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
           ++QRP +V+ PNK LAAQL +EF+   P NAVEYFVSYYDYYQPEAYVP+TDTYIEK+SS
Sbjct: 68  SIQRPTLVLEPNKTLAAQLTAEFRELLPKNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSS 127

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN++++R+RHSAT SLL R D +VVSSVSCIYG+G+ E Y    + L  G  + + +L+ 
Sbjct: 128 INDEVERLRHSATNSLLTRRDVVVVSSVSCIYGLGTPEEYVSRGIHLSRGMEIGRDDLIR 187

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
             V  QY R D+   RG FRV GD+I+I P + E++  RV  FG++I+ ++  +P+TG+ 
Sbjct: 188 RFVGMQYNRNDVDFTRGNFRVRGDTIDIIPMY-EELGVRVEFFGDEIDTLAVLHPVTGEV 246

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +  V+ I ++  SHYV     +  AM  I+ E++ R      +G+LLE QRL  R TYDL
Sbjct: 247 LHEVDEIYVFPASHYVAGPERMERAMAGIEAEMESRCKWFHDQGKLLEEQRLRMRTTYDL 306

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+   G C  IENYS ++ GR PGEPP TL +Y P+D LL +DESHVT+PQI GM+ GD
Sbjct: 307 EMMRQIGICAGIENYSLHIDGRQPGEPPHTLLDYFPDDFLLVIDESHVTVPQIGGMFEGD 366

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS +DNRPL+++E+      T+ +SATPG +EL +  G +VEQIIR
Sbjct: 367 MSRKRTLVDFGFRLPSALDNRPLKWDEFQARIGQTVYLSATPGDYELGRSDG-VVEQIIR 425

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGLVDP + ++    Q++D+ +EI +  ++  R+L+T LTKRMAEDL++YL ER I+V 
Sbjct: 426 PTGLVDPKIVVKPVEGQIDDLMEEIRVRVERDERVLVTTLTKRMAEDLSQYLAERGIKVE 485

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+V TL R+E++R+LR G FDVLVGINLLREGLD+PE  LVAILDADK+GFLRS  S
Sbjct: 486 YLHSDVDTLRRVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSTKS 545

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQTIGRAARNV+ +V +YAD ++ S++ AIDET RRR KQL  N++H I+P+ +++KI 
Sbjct: 546 LIQTIGRAARNVHGEVHMYADAVSDSMRAAIDETERRRAKQLAFNQEHGIDPKPLQKKIS 605

Query: 731 EVIDPILLEDAATTNI 746
           +V D +  ED  T  +
Sbjct: 606 DVTDMLAREDIDTEQL 621



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%)

Query: 724 SVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
           +++    +    +      TT  +             +A L+ L  QMH AA  + FE A
Sbjct: 662 TIRNAGADHTGTVRANGGDTTRGTAKVGAKGEEIVDLEALLRELSTQMHQAASEMRFELA 721

Query: 784 ARIRDEIKRLK 794
           AR+RDEI  LK
Sbjct: 722 ARLRDEIVDLK 732


>gi|167753248|ref|ZP_02425375.1| hypothetical protein ALIPUT_01520 [Alistipes putredinis DSM 17216]
 gi|167659179|gb|EDS03309.1| hypothetical protein ALIPUT_01520 [Alistipes putredinis DSM 17216]
          Length = 680

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/670 (48%), Positives = 446/670 (66%), Gaps = 15/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AIAQLL  I    K   LLGVTGSGKTFT+A VI  + RP +V++
Sbjct: 3   FKLVSDYAPTGDQPEAIAQLLASIRHGSKHNTLLGVTGSGKTFTVANVISQLNRPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFKNFFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+ SIN++I++MR 
Sbjct: 63  HNKTLAAQLYGEFKNFFPENAVEYFVSYYDYYQPEAYLPSTDTYIEKDLSINDEIEKMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           S T +LL  R D IVVSSVSC+YG G+   +  M + +++G+ +  K+ L  LV+  Y R
Sbjct: 123 STTATLLSGRRDVIVVSSVSCLYGCGNPSDFHSMAIHIEVGEILNYKQFLYKLVEALYTR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLE--DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            +  +   TFRV GD+I+I  +  E  +  +RV+ F N++E I    P+TGQ+I+ ++ +
Sbjct: 183 TERELTPATFRVTGDTIDIMAAFGEFGNQCFRVTFFDNEVESIQSIDPVTGQRIQTLDAL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  S +VT +  ++TA++ I  +L  ++   E+ GR  EAQR++QR+ YDLEM++  G
Sbjct: 243 TLYPVSLFVTTKERIHTAVQQIYLDLGKQIAFFEQAGRPAEAQRIKQRVEYDLEMIKELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR  G  P  L +Y P+D L+ +DESHVT+PQ+  M+ GD  RK  L
Sbjct: 303 YCPGIENYSRYFDGRAEGTRPFCLLDYFPQDYLMVIDESHVTLPQVHAMFGGDRARKENL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP+  DNRPLRFEE+  L  TTI VSATP  +EL + +G+IVEQ+IRPTGLVDP
Sbjct: 363 VEYGFRLPAAKDNRPLRFEEFEQLVGTTIYVSATPADYELMKSEGVIVEQLIRPTGLVDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+E+R    Q++D+ +EI+   +   +IL+T +TKRMAE+L++Y     +R RY+HS++ 
Sbjct: 423 PLEVRITDNQIDDLLEEIDKRVRNDDKILVTTITKRMAEELSKYFDRVGVRNRYIHSDID 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER++I+ DLR G FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR+  S+ Q  GR
Sbjct: 483 TLERVQILEDLRAGMFDVLIGVNLLREGLDLPEVALVAILDADKEGFLRNVRSITQIAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK--------- 728
           AAR+ N  VILYAD  T S++ AI+++ RRREKQ+ +N +H + P+  ++          
Sbjct: 543 AARHSNGNVILYADHCTDSMRYAIEQSNRRREKQMRYNMEHEMLPRQAQKSGSGQSTLLA 602

Query: 729 ---IMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
                 V D IL                + S +     +   R++M  AA +L+F  A +
Sbjct: 603 NTVQTPVTDGILYPLPDNRQTLAADVTSAYSTESIDTQIARAREEMERAAKSLDFLAATK 662

Query: 786 IRDEIKRLKS 795
            RD +  L+ 
Sbjct: 663 FRDRMYELQK 672


>gi|187251936|ref|YP_001876418.1| excinuclease ABC subunit B [Elusimicrobium minutum Pei191]
 gi|186972096|gb|ACC99081.1| Excinuclease ABC, B subunit [Elusimicrobium minutum Pei191]
          Length = 665

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/660 (49%), Positives = 444/660 (67%), Gaps = 4/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F+++  + PSGDQP AI  L + I + +  Q LLGVTGSGKT+TMA +I     PA+
Sbjct: 1   MGIFKLKAPFSPSGDQPQAIKNLCQNIKNGQTRQTLLGVTGSGKTYTMANIIAQTDMPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+PNK+LAAQLY+EFK FFP N+VEYF+SYYDYYQPEAY+P+TDTYIEK+SSINE I++
Sbjct: 61  IMSPNKVLAAQLYAEFKQFFPENSVEYFISYYDYYQPEAYIPQTDTYIEKDSSINEHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR  AT SLL RND IV++SVS IY IGS +++++M + +K G  + +  + S L+K QY
Sbjct: 121 MRLKATTSLLTRNDVIVIASVSSIYNIGSPDNFAEMCLYVKKGIPLNRVAVTSLLIKNQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R ++    G FR+ G +I+I P + E    R+ M    +  + + +P+TG  I  V+  
Sbjct: 181 ERSEMEFTPGKFRLRGGNIDILPPYRE-TGIRIEMGPQAVNALYKIHPITGDVIEEVDEE 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY   H+V     ++ A+K I EE + R+ ELE  G+ LEA RL+QR  YD+EML+ TG
Sbjct: 240 FIYPAKHFVVKESDIDRAIKEINEEKEGRVKELEAIGKPLEAYRLKQRTEYDMEMLKQTG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI--PEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            C+ IENYSR L GR PG  P  LF+Y    E+ L+F+DESHV +PQ+ GMY GD  RK 
Sbjct: 300 FCKGIENYSRPLAGREPGSRPDCLFDYFRKHENFLVFIDESHVAVPQVRGMYNGDRSRKQ 359

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L ++GFRLPS +DNRPL+F+E+  + P+T+ VSATPG +EL      IVEQ+IRPTGLV
Sbjct: 360 MLIDFGFRLPSALDNRPLKFDEFEKILPSTVFVSATPGPYELTVSANNIVEQVIRPTGLV 419

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP V I     Q+  +  +I    ++G R L+  LTK+ AEDLT +  E+ I+ RY+HS+
Sbjct: 420 DPQVSIHPTAGQIGHLISKIEERIKKGQRSLVLSLTKKTAEDLTVFFDEKGIKARYLHSD 479

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +++LER+EI++  + G FDVLVGINLLREGLDIP+ GLVAIL AD EGFLR++T+LIQ  
Sbjct: 480 IESLERVEILQKFKQGVFDVLVGINLLREGLDIPQVGLVAILGADNEGFLRNETTLIQIS 539

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN++ +V+LYAD  T SI+ A+ E  RRREKQ  +NK+H+I PQS+ +  +E  D 
Sbjct: 540 GRAARNIDGEVVLYADRKTDSIKNALAEMDRRREKQTAYNKEHHITPQSIIKAEIEFKDF 599

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                        +   +          +K + +QM  AADNLNFE A  +RD +  LKS
Sbjct: 600 ENTAKTEGLRALHNFTDIPK-PDNLPKMIKEIERQMKDAADNLNFELAVDLRDRMLELKS 658


>gi|76801024|ref|YP_326032.1| excinuclease ABC subunit B [Natronomonas pharaonis DSM 2160]
 gi|90111041|sp|Q3ITS0|UVRB_NATPD RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|76556889|emb|CAI48463.1| excinuclease ABC chain B [Natronomonas pharaonis DSM 2160]
          Length = 683

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/673 (49%), Positives = 449/673 (66%), Gaps = 10/673 (1%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
            +         +   + P+GDQP AI  L+ G  S  + Q LLGVTGSGKT T++ V+E 
Sbjct: 9   PDRPDLDRPLSVDAPFEPAGDQPDAIETLVAGFESGAEKQTLLGVTGSGKTNTVSWVLEE 68

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +Q+P +V+A NK LAAQLY EF+  FP NAVEYFVSYYDYYQPEAYV +TDTYI+K+ SI
Sbjct: 69  LQQPTLVLAHNKTLAAQLYEEFRELFPDNAVEYFVSYYDYYQPEAYVEQTDTYIDKDMSI 128

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           NE+I+R+RHSATRSLL R+D IVV+SVS IYG+G   +Y +M ++L+ GD   +++LLS+
Sbjct: 129 NEEIERLRHSATRSLLTRDDVIVVASVSAIYGLGDPANYEEMALRLEAGDERSREDLLSA 188

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV+  Y+R D+   +GTFRV GD++EI+P +    A RV  +G++I+ + +   + G+ +
Sbjct: 189 LVELNYERNDVDFQQGTFRVRGDTVEIYPMYG-RHAVRVEFWGDEIDRLLKVDIVDGEVV 247

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
                  I+   HY  P   L TA++ I+  L+ R+   E++G L+ AQR+E+R T+D+E
Sbjct: 248 SEEPATLIHPAEHYSVPDRRLETAIEEIEGLLEDRIDYFERQGDLVAAQRIEERTTFDIE 307

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           ML+ TG C  IENYS +++ R  GEPP TL +Y P+  L  +DESH TIPQI G + GD 
Sbjct: 308 MLQETGHCSGIENYSVHMSDRETGEPPYTLLDYFPDGFLTVIDESHQTIPQIKGQFEGDR 367

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
            RK +L E GFRLP+  DNRPL+FEE+      T+ VSATPG +E +  +  +VEQI+RP
Sbjct: 368 SRKESLVENGFRLPTAYDNRPLKFEEFEAKTDRTLYVSATPGDYERDHSEQ-VVEQIVRP 426

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           T LVDP +E+  A  QVED+ + I    +   R+L+T LTKRMAEDLTEYL    + V Y
Sbjct: 427 TYLVDPDIEVEPAEKQVEDLIERIQATPE-DERVLVTTLTKRMAEDLTEYLENAGVDVAY 485

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           MH E  TLER E++R LRLG+  VLVGINLLREGLDIPE  LVAILDAD+EGFLRS+T+L
Sbjct: 486 MHDETDTLERHELVRSLRLGEIQVLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTL 545

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
           +QT+GRAARNV   V+LYAD  T S+  AI+ET RRRE Q E N +H   P+++++ + E
Sbjct: 546 VQTMGRAARNVEGSVVLYADETTDSMAAAIEETRRRREIQREFNAEHGHEPRTIEKPVSE 605

Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
              P    D         A     +  + +  ++ L  +M  AADNL FE AA IRD I+
Sbjct: 606 TNLPGSSTDTDGV-----ADVAPDTVDEAEQLIERLETRMQEAADNLEFELAADIRDRIR 660

Query: 792 RLKSSPYFQGLDD 804
            L+ +  F GL+D
Sbjct: 661 ELRET--FDGLED 671


>gi|219852418|ref|YP_002466850.1| excinuclease ABC subunit B [Methanosphaerula palustris E1-9c]
 gi|219546677|gb|ACL17127.1| excinuclease ABC, B subunit [Methanosphaerula palustris E1-9c]
          Length = 654

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/671 (50%), Positives = 448/671 (66%), Gaps = 19/671 (2%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           +         F++ + + P G QP AI QL++G+      Q LLGVTGSGKTFT+A VI 
Sbjct: 1   MKRTEDQQHPFKLVSPFEPKGSQPEAIEQLVQGLSDGPARQTLLGVTGSGKTFTIANVIA 60

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
           A+QRP +V+A NK LAAQLY+EFK+FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK+S 
Sbjct: 61  AVQRPTLVIAHNKTLAAQLYNEFKDFFPENRVEYFVSYYDYYQPESYIPQRDQYIEKDSQ 120

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN +I++MR + T SL+ R D IVV+SVSCIYG+G+ E++  M  +LK+ D V+++ LL 
Sbjct: 121 INPKIEQMRLATTASLMSRRDVIVVASVSCIYGLGNPENFQSMGFELKVHDRVQRRALLL 180

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV+ Q++R D+ ++ G FRV GD+I+I P +  ++  R+ +FG++IE I E    TG+K
Sbjct: 181 RLVEIQFERNDLELMPGRFRVKGDTIDIIPGYFNNI-IRIELFGDEIERIMEIDRNTGEK 239

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
             +++   +Y   H+V P  T   AM  I    +  L E   E  L+E+ RL QR  YDL
Sbjct: 240 RESMDYFFVYPARHFVIPEETRKRAMASI----REELEERLPELGLIESHRLAQRTQYDL 295

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+E TGSC+ IENYSR+   R  GE P  L +Y P+D L+ +DESH TIPQ+ GMY+GD
Sbjct: 296 EMMEETGSCKGIENYSRHFDFRKAGEKPYCLLDYFPDDFLMVIDESHQTIPQVHGMYKGD 355

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
           + RK +L +YGFRLPS  DNRPL+FEE+       I VSATP  +E E     +VEQIIR
Sbjct: 356 YSRKKSLIDYGFRLPSAFDNRPLKFEEFERYMKDVIYVSATPSRYERETS-IQVVEQIIR 414

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DPPV IR    Q  DV  E+     +G R L+T LTKR+AE+LTEYL +R IR R
Sbjct: 415 PTGLIDPPVTIRPTDGQTVDVIREVKKVIARGDRALITTLTKRLAEELTEYLADRGIRTR 474

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSE+ T+ER EIIR LRLG+FDVLVGINLLREGLDIPE G + ILDADKEGFLR   S
Sbjct: 475 YLHSEIDTIERTEIIRQLRLGEFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDARS 534

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQ IGRAARN++S V+LYADT+T SI+ A+ ET RRR  Q+ +N++H+I P+++++ I 
Sbjct: 535 LIQIIGRAARNMHSYVVLYADTMTDSIKTALSETERRRTLQIAYNEEHHIVPETIRKPIR 594

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           E                       L +K+    L +L  +M  AA+ L+FE A  +R+ I
Sbjct: 595 E-------------KEIDLKDVKHLPRKEIPNLLIALDAEMKQAAEVLDFERAIALRERI 641

Query: 791 KRLKSSPYFQG 801
           K+L +     G
Sbjct: 642 KQLNARAAEDG 652


>gi|124485733|ref|YP_001030349.1| excinuclease ABC subunit B [Methanocorpusculum labreanum Z]
 gi|124363274|gb|ABN07082.1| Excinuclease ABC subunit B [Methanocorpusculum labreanum Z]
          Length = 644

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/656 (49%), Positives = 436/656 (66%), Gaps = 17/656 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q+ Y P G QP AI +L +G+   E+ Q LLGVTGSGKTFT+A VI+ +QRP +V+A
Sbjct: 5   FSLQSTYSPKGSQPEAIEELTEGLLDGEQFQTLLGVTGSGKTFTIANVIQNVQRPTLVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK+FFP+N VEYF+SYYDYYQPE+Y+ + D YIEK++SIN +I+ MR 
Sbjct: 65  HNKTLAAQLYNEFKDFFPNNHVEYFISYYDYYQPESYIAKKDQYIEKDASINPKIEMMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +AT S+L   D IVV+SVSCIYG+G+ E++  +  +++ G  + ++ELL  L+   ++R 
Sbjct: 125 AATASILSHRDTIVVASVSCIYGLGNPENFQNLGFEVRRGQKITRRELLERLLSILFERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI ++ G FRV GD++++ P +  ++  R+ +FG+ I+ ISE    TG++   +E   IY
Sbjct: 185 DIELMPGRFRVKGDTVDLIPGYFNNI-IRIELFGDTIDRISEIDKTTGKEKERMEYFFIY 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              H+VTP      A+  I+ EL+  L E   +   L A RL QR  YDLEM+E TGSC+
Sbjct: 244 PARHFVTPESEKQAAIDSIRGELEEVLAENRLDD--LAAHRLRQRTQYDLEMIEETGSCK 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+   R  GE P  L +Y P+D L+ +DESH ++PQ+ GMY GD  RK +L EY
Sbjct: 302 GIENYSRHFDRRAAGEKPYCLLDYFPDDFLMVIDESHQSLPQVRGMYNGDHSRKQSLVEY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL+F E+       I VSATPG +E +    II EQIIRPTGLVDP VE
Sbjct: 362 GFRLPSAFDNRPLKFVEFEKYLKQVIFVSATPGDYERKYSSQII-EQIIRPTGLVDPVVE 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q +D+  EI+    +G R L+T LTK++AE+LTEYL  + I+ RY+HSE++TLE
Sbjct: 421 VRPITGQTDDLLREISAVIGRGDRALVTTLTKKLAEELTEYLAGQGIKTRYLHSEIQTLE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E+IR LRLG FDVLVGINLLREGLDIPE G + ILDADKEGFLR   SLIQ IGRAAR
Sbjct: 481 RTELIRQLRLGMFDVLVGINLLREGLDIPEIGFIGILDADKEGFLRDARSLIQIIGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +S V+LYAD +T S++ A+ ET RRRE Q+  N +H I P ++K+ + E         
Sbjct: 541 NSDSHVVLYADKMTDSMREALAETARRREMQMAFNTEHGITPVTIKKPVRE--------- 591

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                         L K +    +  L  +M+ AA  L+FE A ++RD +K L+  
Sbjct: 592 ----KEVDIKDIRHLPKSEIPNLIIELEAEMNAAAAALDFERAIQLRDRVKELRGG 643


>gi|160902951|ref|YP_001568532.1| excinuclease ABC subunit B [Petrotoga mobilis SJ95]
 gi|160360595|gb|ABX32209.1| excinuclease ABC, B subunit [Petrotoga mobilis SJ95]
          Length = 658

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/655 (49%), Positives = 452/655 (69%), Gaps = 5/655 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F+++++Y P GDQP AI +L  GI+   + Q LLGVTGSGKT+TMA +I  + RP +V+
Sbjct: 1   MFKLRSEYEPQGDQPKAIEELSSGINKNYRFQTLLGVTGSGKTYTMANIIANVNRPTLVL 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           +PNKILA QLY+EFK FFP N VE+F+SYYDYYQPEAY+P  D YIEK + IN+ + +MR
Sbjct: 61  SPNKILAVQLYNEFKEFFPENRVEFFISYYDYYQPEAYIPSRDIYIEKNADINDILVKMR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            S  +S+L R D IVVSSVS IY  G+ + +S + + L++ +   ++E+L  L K QY R
Sbjct: 121 LSTLKSVLTRRDVIVVSSVSAIYASGNPDDFSNINLYLRVNEEYSRREILIKLGKMQYTR 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           Q+   + GTFR  GD +EIFP + ED   RV+ F N++E+I          I   + I I
Sbjct: 181 QEKDYLGGTFRWKGDVLEIFPPY-EDFGIRVTFFDNEVEKIEALDVFNRTIIEEFDKITI 239

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +VT +  + +A++ I  +L+ ++   ++EG+LLEAQR+EQR+  DLE L+T G C
Sbjct: 240 YPAKEFVTSQEKIFSAIERINADLQTQIEYFKREGKLLEAQRIEQRVKQDLEFLQTLGYC 299

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           + IENYSRY  GRNPG+ P TL +Y  ED + F+DESH+ +PQ+  M+RGD+ RK  L +
Sbjct: 300 KGIENYSRYFDGRNPGDSPWTLLDYFDEDFVTFIDESHIAVPQLRAMFRGDYARKKNLVD 359

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPLRFEE+       I VSATPG +E+E     IVEQIIRPTGLVDP V
Sbjct: 360 YGFRLPSALDNRPLRFEEFLEKTNQIIFVSATPGPFEMEVSDQ-IVEQIIRPTGLVDPKV 418

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E++S   QV+D   E+    ++G R L  VLTK+ AE L+++L    I+  Y+HSE+ T+
Sbjct: 419 EVKSTEGQVDDFISEVKEVVERGERALAVVLTKKDAEILSDHLNLMGIKSLYLHSELDTI 478

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER E+I+ +R G+ +V+VG+NLLREGLD+PE  LVAI+DAD+EGFLRS+T+LIQTIGRAA
Sbjct: 479 ERSEVIKKIRNGEIEVVVGVNLLREGLDLPEVSLVAIMDADREGFLRSETTLIQTIGRAA 538

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  KV+LYAD IT++++ AIDET RRRE Q+++N  +NI P+S+ +K+ E +     +
Sbjct: 539 RNVQGKVLLYADRITEAMKTAIDETNRRREIQIQYNIDNNITPKSIIKKLPEDMFAPFKD 598

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +       I A + +LS      +L  L ++M+ AA  L +EEAAR RDEIKR+K
Sbjct: 599 NEVKEEDYIFAVEENLSPDD---YLAMLEEKMYEAASELKYEEAARYRDEIKRIK 650


>gi|206895378|ref|YP_002247043.1| excinuclease ABC, B subunit [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737995|gb|ACI17073.1| excinuclease ABC, B subunit [Coprothermobacter proteolyticus DSM
           5265]
          Length = 651

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/654 (49%), Positives = 446/654 (68%), Gaps = 12/654 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + PSGDQP AI +L  GI+   K Q LLGVTGSGKTFTMAK+IEA+  P +V++
Sbjct: 5   FKVEAPFEPSGDQPEAIEKLCDGINKGFKFQTLLGVTGSGKTFTMAKIIEALNLPTLVIS 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LA QLYSEF+ FFPHNAVE F+SYYDYY+PEAY+P TDTY+ K+++INE ID+MR 
Sbjct: 65  PNKTLAVQLYSEFREFFPHNAVELFMSYYDYYRPEAYIPETDTYLPKDAAINEDIDKMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  SLL R D +VV+SVSCIY + + E ++     +  G  +  K  +  L +  Y+R 
Sbjct: 125 SAISSLLSRRDVVVVASVSCIYSLENPEVFAGSAFSITEGMKMNTKFFMRRLSQISYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI +  G FR  G  +++FP H + +   V    + IE I E  PLTG+++ +  +   +
Sbjct: 185 DIELRPGNFRSRGFKVDVFPPHAQGI-ISVVFDDDVIESIYESDPLTGERMFSYHSYTFF 243

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
            + ++VT    +   +  +  EL  ++ + ++EG+ +EAQR+E+R  YD+EML +TG C 
Sbjct: 244 PSKYFVTSEQLIRNVVDQVMVELDKQVRQFKEEGKYIEAQRIEERTKYDMEMLLSTGYCS 303

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY +GR  G+ P TL +Y     L+F+DESH+TIPQI  M+ G+  RK TL  +
Sbjct: 304 GIENYSRYFSGRREGQRPYTLLDYFRRPYLMFIDESHLTIPQIRAMFHGEMQRKETLVRF 363

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL F+E+  L    I VSATPG +ELE  +  +VEQI+RPTGLVDP V 
Sbjct: 364 GFRLPSAKDNRPLNFDEFLSLVDKVIFVSATPGPYELEVSKQ-VVEQIVRPTGLVDPEVV 422

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++ A+ QV+D+  E+    Q G R L+  LTK+MAE L+ YL     +VRY+HSE+  +E
Sbjct: 423 VKPAKNQVDDLVRELTRVVQHGERALVLTLTKQMAEKLSTYLSSLKFKVRYLHSEIDVIE 482

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +++++LR G  D++VGINLLREGLD+PE  LVA+LDADKEGFLRS+ SLIQ IGRA+R
Sbjct: 483 RSQVLKELRTGVIDIIVGINLLREGLDLPEVSLVAVLDADKEGFLRSERSLIQMIGRASR 542

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +VILYAD +T S++ A+DET RRREKQL +NK+H I PQ+V++++++ +D      
Sbjct: 543 NVNGRVILYADQLTDSLRSAVDETNRRREKQLAYNKEHGITPQTVRKRVVDYLD------ 596

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                IS  A    ++K++  A L  L ++M+ AA+ L FE+A  IRD+IK LK
Sbjct: 597 ----FISGAASGSRMTKEEANAMLLQLEQEMYEAAEALEFEKAIVIRDKIKELK 646


>gi|320451473|ref|YP_004203569.1| excinuclease ABC subunit B [Thermus scotoductus SA-01]
 gi|320151642|gb|ADW23020.1| excinuclease ABC, subunit B [Thermus scotoductus SA-01]
          Length = 666

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/650 (51%), Positives = 450/650 (69%), Gaps = 11/650 (1%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207
            P GDQP AI +LL+ +   E+   LLG TG+GKT TMAKVIEA+ RPA+V+APNKILAA
Sbjct: 9   TPKGDQPKAIRELLEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAA 68

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           QL +EF+  FP NAVEYF+SYYDYYQPEAYVP  D YIEK++SIN +I+R+RHS TRSLL
Sbjct: 69  QLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLL 128

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
            R D +VV+SVS IYG+G    Y    + ++ G    ++ LL  L++  Y R D+ +  G
Sbjct: 129 TRKDVVVVASVSAIYGLGDPREYRARNLVVERGAVYPREALLERLLELGYTRNDLDLSPG 188

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            FR  G+ +EIFP++ E    RV +FG+++E I + +P+TG+++R +    ++  +HY++
Sbjct: 189 RFRARGEVLEIFPAY-ETEPLRVELFGDEVERILQVHPITGERLRELPGFVLFPATHYLS 247

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
           P   L   ++ I++EL  R+   E+ G +L AQRL++R  YDLEML   G+C  +ENY+R
Sbjct: 248 P-EGLEGVLQEIEKELWERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYAR 306

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
           Y TG+ PGEPP TL +Y PED L+F+DESHVT+PQ+ GMYRGD+ RK TL +YGFRLPS 
Sbjct: 307 YFTGKAPGEPPYTLLDYFPEDFLVFLDESHVTVPQLMGMYRGDYARKKTLVDYGFRLPSA 366

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +DNRPLRFEE+    P  + VSATPG +ELE   G +VEQIIRPTGL+DP V ++    Q
Sbjct: 367 LDNRPLRFEEFLERVPQVVFVSATPGPFELEHS-GALVEQIIRPTGLLDPLVVVKPTENQ 425

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           + D+ + I   AQ+G R L+TVLT RMAE+LT +L E  +R RYMH E+   ER  +IRD
Sbjct: 426 ILDLMEGIRERAQRGERTLVTVLTVRMAEELTAFLQEHGVRARYMHHELDAFERQALIRD 485

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LRLG FD LVGINLLREGLDIPE  LVAILDADK GFLRS+ SLIQTIGRAARN   +V 
Sbjct: 486 LRLGHFDALVGINLLREGLDIPEVSLVAILDADKTGFLRSERSLIQTIGRAARNAKGEVW 545

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           LYADTI+++++ AI ET RRR  Q  +N++H I P++V++++  +I P            
Sbjct: 546 LYADTISEAMERAIRETNRRRALQEAYNQEHGIVPETVRKEVRAIIRP--------EEYG 597

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
             A   +   +  K  +  L   M  AA+ L+FE AAR+RDE++ L++  
Sbjct: 598 EKAPVEAWEGEDLKERIAELELAMWQAAEALDFERAARLRDELRALEARL 647


>gi|289753720|ref|ZP_06513098.1| excinuclease ABC (subunit B-helicase) uvrB [Mycobacterium
           tuberculosis EAS054]
 gi|289694307|gb|EFD61736.1| excinuclease ABC (subunit B-helicase) uvrB [Mycobacterium
           tuberculosis EAS054]
          Length = 654

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/568 (58%), Positives = 423/568 (74%), Gaps = 1/568 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 7   FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 67  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAAR
Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRR 708
           NV+ +V +YAD IT S++ AIDET RRR
Sbjct: 546 NVSGEVHMYADKITDSMREAIDETERRR 573


>gi|257463628|ref|ZP_05628019.1| excinuclease ABC subunit B [Fusobacterium sp. D12]
 gi|317061180|ref|ZP_07925665.1| excinuclease ABC subunit B [Fusobacterium sp. D12]
 gi|313686856|gb|EFS23691.1| excinuclease ABC subunit B [Fusobacterium sp. D12]
          Length = 660

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/657 (51%), Positives = 474/657 (72%), Gaps = 3/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++   Y P+GDQP AI +L++ +  + + Q+LLGVTGSGKTFT+A VIE +QRP +++
Sbjct: 1   MFRLCAKYQPTGDQPIAIEKLVESLEKKNRDQVLLGVTGSGKTFTIANVIERVQRPTLII 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK LAAQLY E+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+S++NE+ID++R
Sbjct: 61  APNKTLAAQLYQEYKAFFPDNAVEYFVSYYDYYQPEAYIKTTDTYIEKDSAVNEEIDKLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           ++AT +L+ R D I+V+SVS IYG+GS E Y +M + + +   + + +L+  L+  +Y+R
Sbjct: 121 NAATAALIMRKDVIIVASVSAIYGLGSPEIYKKMTIPIDLKTGILRAKLIERLIALRYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIK 378
            D+  IRG+FRV GD I+++PS+LE   +R+  +G+D+E ISE + LTG+KI+  +E I 
Sbjct: 181 NDMNFIRGSFRVKGDVIDVYPSYLE-TGYRLEFWGDDLEAISEIHTLTGEKIKKNLERIV 239

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IYA + Y+T    L   +  I+E+    + E +K G+LLEAQRL+QR+ YD+EM++  G 
Sbjct: 240 IYAATQYITEEEDLERIISEIREDQTREVKEFQKVGKLLEAQRLQQRVDYDIEMIKEIGY 299

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENY+RYL G+ PGE P TL +Y PE+ LL +DESHV +PQI GMY GD  RK  L 
Sbjct: 300 CKGIENYARYLAGKLPGETPNTLLDYFPENFLLVLDESHVGVPQIRGMYNGDISRKTALV 359

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           E GFRL + +DNRPL+FEE+      TI VSATPG +E++Q    IVEQ+IRPTG++DP 
Sbjct: 360 ENGFRLKAALDNRPLQFEEFRERTGQTIYVSATPGDYEIKQAGSAIVEQLIRPTGILDPL 419

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+RS + QV+D+ +EI+    +  R+L+T LTK+MAE+LTEY  E  ++VRYMHS+V T
Sbjct: 420 IEVRSTKGQVDDLLEEIHKRMLKKQRVLVTTLTKKMAEELTEYYEELGVKVRYMHSDVDT 479

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           L+RIEII+ LR G+ DVLVGINLLREGLDIPE  LVAIL+ADKEGFLRS+ SLIQTIGRA
Sbjct: 480 LDRIEIIKALRKGEIDVLVGINLLREGLDIPEVSLVAILEADKEGFLRSRRSLIQTIGRA 539

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN+  KVILY D +T S+ +A++ET RRR  Q  +N  H + P+S+ ++I E I  +  
Sbjct: 540 ARNIEGKVILYGDVMTDSMTMAMEETERRRGIQENYNLLHGLEPESIVKEIAEEIIQLDY 599

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              +    S  +++   SK++ +  +    K++   +  L+FE+A  +R+E+KRL+ 
Sbjct: 600 G-ISKEAFSQKSKKKFHSKEEIEKEIAKCHKKIVKLSKELDFEQAILVREEMKRLQE 655


>gi|330719341|ref|ZP_08313941.1| excinuclease ABC subunit B [Leuconostoc fallax KCTC 3537]
          Length = 603

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/603 (52%), Positives = 425/603 (70%), Gaps = 2/603 (0%)

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           M+ NK LA QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++
Sbjct: 1   MSHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKL 60

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R+SAT +L ER+D I+V+SVS I+G+G    Y   +V L+ G    + +LL  L+  Q++
Sbjct: 61  RNSATSALFERDDVIIVASVSSIFGLGDPHQYQDHVVSLRNGLEYGRDQLLRDLIDIQFQ 120

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R DI   RG FRV GD +EIFP+  ++ A R+  FG++I+ I EF+ LTG+ +  ++ I 
Sbjct: 121 RNDIDFQRGRFRVRGDVVEIFPASSDENALRIEFFGDEIDRIREFHALTGEVVAELDHIA 180

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  +H++T    +N A+  IK EL  +L   E+EG+LLEAQRL+QR  YDL M+E  G 
Sbjct: 181 IFPATHFMTNDAIMNRAIGTIKVELDEQLKVFEQEGKLLEAQRLKQRTEYDLAMMEEMGY 240

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
              IENYSR++ GR PGEPP TL ++ P+D L+ VDESHVT+PQ+ GMY GD  RK  L 
Sbjct: 241 TNGIENYSRHMDGRKPGEPPFTLLDFFPDDFLIVVDESHVTMPQVRGMYNGDKARKQQLV 300

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDP 557
           +YGFRLPS +DNRPL  +E+       I +SATPG +E E+  +  I +QIIRPTGL+DP
Sbjct: 301 DYGFRLPSALDNRPLTLQEFEKHVNQIIYMSATPGVYESERVPEKYIAQQIIRPTGLLDP 360

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +E+R    Q++D+  EIN   ++  R+ +T LTKRMAEDLT+YL + +I+V Y+H+++K
Sbjct: 361 EIEVRPVMGQIDDLVGEINQRVEKDERVFITTLTKRMAEDLTDYLKDLSIKVAYLHADIK 420

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLER EIIRDLRLGK+DVL+GINLLREG+D+PE  LVAILDADKEGFLR++ SLIQTIGR
Sbjct: 421 TLERTEIIRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERSLIQTIGR 480

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN N  VI+YAD++T S+Q A+DET RRRE Q  +N KH I P+++K+ I ++I    
Sbjct: 481 AARNENGHVIMYADSVTDSMQRAMDETRRRREIQTAYNTKHGITPRTIKKDIRDLISVSH 540

Query: 738 LEDAATTNISI-DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
             +     I +       L K +  + L ++  QM  AA  L+FEEAA +RD I  LK+S
Sbjct: 541 ETNNKEETIDLTKVAFKDLPKDEQTSILNNMDGQMRAAAKALDFEEAANLRDLIMELKTS 600

Query: 797 PYF 799
              
Sbjct: 601 AGL 603


>gi|269123687|ref|YP_003306264.1| excinuclease ABC, B subunit [Streptobacillus moniliformis DSM
           12112]
 gi|268315013|gb|ACZ01387.1| excinuclease ABC, B subunit [Streptobacillus moniliformis DSM
           12112]
          Length = 658

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/656 (50%), Positives = 461/656 (70%), Gaps = 7/656 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI ++++ I +    Q+LLGVTGSGKTFT+A +I+ + RPA++MA
Sbjct: 3   FKLHSDYKPTGDQPEAIKKVVENIKNGISDQILLGVTGSGKTFTIANIIKELNRPALIMA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNKILAAQLY+E+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+S+INE+ID++ H
Sbjct: 63  PNKILAAQLYNEYKQFFPENAVEYFVSYYDYYQPEAYIQSTDTYIEKDSAINEEIDKLTH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG-DSVEQKELLSSLVKQQYKR 319
           +AT +LL R D IV++SVS IYG+GS  SY+   + + I    + +KEL+ SL+  +Y+R
Sbjct: 123 AATAALLNRKDVIVIASVSAIYGLGSPNSYADRSLYVDIALSGIGRKELIKSLLSLRYER 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D  + R  FRV GD I+++P + +D+ +R   F  ++E ISE + LT +KIR+++ + +
Sbjct: 183 NDAILERAKFRVKGDVIDVYPIY-QDIVYRFEFFDEELESISELHTLTYKKIRDIKRLNL 241

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
              +HY++   T    +  I+EE+  R+   E   +L+EAQR++QR  YD+EM+   G C
Sbjct: 242 MPATHYLSEVDTNV-LVDNIREEMNERIKYFEDRLQLVEAQRIKQRTEYDIEMIREIGYC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           + +ENYSRYLTG+  GE P TL +Y PE  ++F+DESH+ +PQI GM  GD  RK  L  
Sbjct: 301 KGMENYSRYLTGKKSGEAPYTLLDYFPESPIVFLDESHIMVPQIGGMSNGDRSRKEMLVN 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS +DNRPLR EE+       + VSATP  +E+ +  G IVE ++RPTG+V+P +
Sbjct: 361 HGFRLPSALDNRPLRHEEFFNKVEQVVYVSATPSDYEINESNGEIVELLVRPTGIVEPSI 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR  + QV+++ D+I     +G RIL+T LTK+MAE+LTEY  +  I+V+YMHSE+ T+
Sbjct: 421 EIRPTKNQVDNLMDDIKERVSRGERILVTTLTKKMAEELTEYYLDYGIKVKYMHSEISTI 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EI++ LR G+FDVLVGINLLREGLD+PE  LVAIL+ADKEGFLRS+ SLIQT+GRAA
Sbjct: 481 DRVEIVKGLRNGEFDVLVGINLLREGLDLPEVSLVAILEADKEGFLRSRRSLIQTMGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNVN  VILYAD ITKS++ AIDE  RRR+ Q  +N ++NI PQ+VK  + E +    LE
Sbjct: 541 RNVNGHVILYADKITKSMKEAIDEVERRRDVQERYNMENNIVPQNVKAHLTESL----LE 596

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                    + +    S K+ +  +K +  +M   A+N  +EEA   R+++  LK 
Sbjct: 597 YTDEVEDKKENKVTFKSIKELEKEIKKVEAEMKKFAENYQYEEAIDRRNKLNELKK 652


>gi|62185531|ref|YP_220316.1| excinuclease ABC subunit B [Chlamydophila abortus S26/3]
 gi|81312322|sp|Q5L4S6|UVRB_CHLAB RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|62148598|emb|CAH64370.1| UvrABC system protein B UvrB [Chlamydophila abortus S26/3]
          Length = 656

 Score =  733 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/660 (50%), Positives = 433/660 (65%), Gaps = 9/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P GDQP AIA+L +G+ +R   Q+LLG TGSGKTFT+A V+  + RP +V+A
Sbjct: 3   FELRAAFSPCGDQPEAIAKLTQGVRNRTPSQVLLGTTGSGKTFTIANVVANVNRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYF+SYYDYYQPEAY+ R DTYIEK   IN +ID++R 
Sbjct: 63  HNKTLAAQLYQEFKEFFPNNAVEYFISYYDYYQPEAYIARNDTYIEKSLLINSEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSSVSCIYGIGS E+Y+ M ++L +G    +  L S LVK  Y+  
Sbjct: 123 SATRSILERRDTLIVSSVSCIYGIGSPENYTSMALELTVGTEYPRALLASQLVKMHYQ-A 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R TFR  G  I+IFP++  ++A R+  F + +  I    PLT     +V ++ +Y
Sbjct: 182 SSVPQRSTFRERGSVIDIFPAYESELAIRLEFFNDTLTSIDYSDPLTMMPKESVTSVILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ RL   +   R +E  RL  R T+D+EM++ TG C+
Sbjct: 242 PGSHYVTPEAVREQAIRSIREELEERLAFFQD--RPIEQDRLFHRTTHDIEMIKETGFCK 299

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ T   PG PP  L +Y PED LL +DESH T+PQI  MYRGDF RK +L EY
Sbjct: 300 GIENYSRHFTNTPPGAPPTCLLDYFPEDFLLVIDESHQTLPQIRAMYRGDFSRKQSLVEY 359

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  EL + QG IVEQI+RPTG+ DP  E
Sbjct: 360 GFRLPSAYDNRPLTYEEARKYFHNVIYVSATPGETELNESQGHIVEQILRPTGIPDPIPE 419

Query: 561 IRSARTQVEDVYDEINLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           IR A  QV+D+ +EI     +   +IL+  +TK++AED+  +L E +I   Y+HS ++T 
Sbjct: 420 IRPATGQVDDLLEEIRKRLSKSQEKILVISITKKLAEDIAAFLSELDIAAAYLHSGIETA 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  I+ DLRLG  DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS +SLIQ  GRAA
Sbjct: 480 ERTRILSDLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAA 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+ KVI YAD  T SI+  + ET RRR  QLE+NK +NI P+ + + I     P   +
Sbjct: 540 RNVDGKVIFYADHKTLSIEQTLKETERRRHIQLEYNKANNITPKPIIKAIFANPIPQGGK 599

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
            A       D  Q  LS ++ +  +K     M  AA+   F+EAA+ RD++K  K    +
Sbjct: 600 KAVQ-----DTPQKPLSTQELEKLIKKYENLMLQAANAFRFDEAAQYRDKMKAAKEQLLY 654


>gi|294782396|ref|ZP_06747722.1| excinuclease ABC subunit B [Fusobacterium sp. 1_1_41FAA]
 gi|294481037|gb|EFG28812.1| excinuclease ABC subunit B [Fusobacterium sp. 1_1_41FAA]
          Length = 663

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/653 (52%), Positives = 471/653 (72%), Gaps = 4/653 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F++ ++Y P GDQP AI  ++K I    K Q+LLGVTGSGKTFT+A VIE +QRPA
Sbjct: 2   ENNLFKIHSEYKPMGDQPTAIESIVKNIERGVKDQVLLGVTGSGKTFTIANVIERLQRPA 61

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID
Sbjct: 62  LIIAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEID 121

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     +E+KEL+  L+  +
Sbjct: 122 KLRNAATAALIHRRDVIIVASVSSIYGLGSPDTYRKMTIPIDKQTGIERKELMKKLIALR 181

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VE 375
           Y+R DI   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQKI+  +E
Sbjct: 182 YERNDIAFERGKFRIKGDVIDIYPSYMNN-GYRLEYWGDDLEEISEINTLTGQKIKKNLE 240

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I IY  + Y+T     +  ++ IK++L++ +   E E +LLEAQRL QR  YDLEM+  
Sbjct: 241 RIVIYPATQYLTADDDKDRIIEEIKDDLRVEVKSFEDEKKLLEAQRLRQRTEYDLEMITE 300

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C+ IENYSRYL+G+ PGE P TLFEY P+D LLF+DESH+T+PQ+ GMY GD  RK 
Sbjct: 301 IGYCKGIENYSRYLSGKRPGETPDTLFEYFPKDFLLFIDESHITVPQVRGMYNGDRARKE 360

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L E GFRL + +DNRPLRFEE+      T+ +SATPG +E+E     I EQ+IRPTG+V
Sbjct: 361 ALVENGFRLKAALDNRPLRFEEFREKSNQTVFISATPGDFEVEVSDNNIAEQLIRPTGIV 420

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR  + QV+D+ DEI     +  R+L+T LTK++AE+LTEY  E  ++V+YMHS+
Sbjct: 421 DPEIEIRPTKNQVDDLLDEIRKRVAKKERVLVTTLTKKIAEELTEYYIELGVKVKYMHSD 480

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + TLERIEIIR LR G+ DV+VGINLLREGLDIPE  LVAI++ADKEGFLRS+ SL+QTI
Sbjct: 481 IDTLERIEIIRALRKGEIDVIVGINLLREGLDIPEVSLVAIMEADKEGFLRSRRSLVQTI 540

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARNV  +VILYAD +T S++ AI ET RRR+ Q E+N  +NI+P+S+ ++I E  D 
Sbjct: 541 GRAARNVEGRVILYADIMTDSMKEAIIETERRRKIQKEYNAYNNIDPKSIVKEIAE--DL 598

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           I L+         + +++  SK   +  +  L K++      L+FE+A  +RD
Sbjct: 599 INLDYGIEDKKFENDKKVFRSKADIEKEIIKLEKKIKKLVGELDFEQAIVLRD 651


>gi|159904552|ref|YP_001548214.1| excinuclease ABC subunit B [Methanococcus maripaludis C6]
 gi|159886045|gb|ABX00982.1| excinuclease ABC, B subunit [Methanococcus maripaludis C6]
          Length = 646

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/663 (49%), Positives = 443/663 (66%), Gaps = 21/663 (3%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSR--EKVQLLLGVTGSGKTFTMAKVIEAMQR 194
               F+++ D+ P G QP AIA+L+  +     +  Q LLGVTGSGKTFT+A VIE +Q+
Sbjct: 2   SFPNFKLKADFKPKGSQPEAIAELVNDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQK 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+A NK LAAQLY+EFK FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +
Sbjct: 62  PTLVIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPK 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR  AT ++L R D I+V+SVSCIYG+G+ E + +M  +LK+GD +++ +++  LV 
Sbjct: 122 IEQMRLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGDKIKRSDIIEKLVD 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY+R D+ ++ G FRV G++++I P + +D+  RV MFG++I+ I E  P    K   +
Sbjct: 182 IQYERNDMELVPGRFRVKGETLDIIPGYQDDI-LRVEMFGDEIDRIYELDPKNMSKKHEL 240

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           ++  +Y   H+V P      A+  I +EL   L  L     +L++ RL+Q+  YD+EM+E
Sbjct: 241 DSFYMYPAKHFVIPEEDKKNAITSILKELDEWLPHL----DMLKSHRLKQKTLYDIEMIE 296

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            TGSC+ IENYSR+   R  GEP   L +Y PED L+ +DESH T+PQI GMY+GD  RK
Sbjct: 297 ETGSCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTLPQIRGMYKGDRSRK 356

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +L +YGFRLPS  DNRPLRFEE+       I VSATPG +EL+     +VEQIIRPTGL
Sbjct: 357 QSLIDYGFRLPSAYDNRPLRFEEFKKYMNNVIFVSATPGEYELDNSNQ-VVEQIIRPTGL 415

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP VEIR    QVED+  E     ++G R+L+T LTKR+AE+LTEYL +RN++ RY+HS
Sbjct: 416 LDPEVEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHS 475

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER EIIR+LRLGKFD LVGINLLREGLDIPE G V ILDADKEGFLR+  SLIQT
Sbjct: 476 DIDTIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQT 535

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN NSKV+LYAD +T SI+ A+ ET RRR  Q E+N+ HNI P+++ + I E + 
Sbjct: 536 IGRAARNANSKVVLYADKMTDSIKKAVFETERRRNLQKEYNETHNITPKTIVKPIREKVV 595

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            I            +      ++    A                 FE+A +IRD I +LK
Sbjct: 596 DISDVKHIPVADIPNVIIELEAEMYEAAEALE-------------FEKAIKIRDTIAKLK 642

Query: 795 SSP 797
              
Sbjct: 643 KKI 645


>gi|291515122|emb|CBK64332.1| Excinuclease ABC subunit B [Alistipes shahii WAL 8301]
          Length = 690

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/671 (47%), Positives = 439/671 (65%), Gaps = 16/671 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AI QL+  I    K   LLGVTGSGKTFT+A VI  + RP +V++
Sbjct: 3   FKLVSDYAPMGDQPEAIGQLVSSIEHGSKHNTLLGVTGSGKTFTVANVIARLNRPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+NFFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+  IN +I++MR 
Sbjct: 63  HNKTLAAQLYGEFRNFFPENAVEYFVSYYDYYQPEAYLPSTDTYIEKDLQINAEIEKMRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
               +LL  R D IVVSSVSC+YG G+   +    + +K+G  V  K  L  LV+  Y R
Sbjct: 123 GTVATLLSGRRDVIVVSSVSCLYGAGNPADFHATAINIKVGQVVSYKHFLYKLVEALYTR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLE--DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            +  +   TFRV GD+++I  +  E  +  +RV  F N++E I    P+TGQ+I ++++I
Sbjct: 183 TERELEPATFRVNGDTVDIMAAFGEFGNQCFRVMFFDNEVEAIQSIDPVTGQRIASLDSI 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA + +VT +  +N A++ I  +L  ++   E+ GR +EAQR++QR+ YDLEM++  G
Sbjct: 243 TLYATNLFVTTKERINAAVQQIYLDLGKQIEFFERAGRPMEAQRIKQRVEYDLEMIKELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR  G  P  L +Y P+D L+ VDESHVT+PQ+  M+ GD  RK  L
Sbjct: 303 YCPGIENYSRYFDGRAAGTRPFCLIDYFPKDYLMVVDESHVTLPQVHAMFGGDRARKENL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP+  DNRPL F E+  L+ T+I VSATP  +EL + +G+IVEQ+IRPTGLVDP
Sbjct: 363 VEYGFRLPAAKDNRPLTFSEFEQLQGTSIYVSATPADYELMKSEGVIVEQLIRPTGLVDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+E+R    Q++D+  EI+   +   ++L+T +TKRMAE+L++Y     +R RY+HS+V 
Sbjct: 423 PLEVRVTLNQIDDLIGEIDKRVKNDDKVLVTTITKRMAEELSKYFDRVGVRNRYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERI+I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL Q  GR
Sbjct: 483 TLERIQILEDLRAGMFDVLVGVNLLREGLDLPEVALVAILDADKEGFLRNVRSLTQIAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK--------- 728
           AAR+    VILYADT T S++ AI+++ RRREKQ+ +N +H + P+  ++          
Sbjct: 543 AARHSQGNVILYADTCTDSMRYAIEQSNRRREKQVRYNMEHEMLPRQAQKSGSGQSALLA 602

Query: 729 ----IMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
                 EV              + D Q+   + +   A +   R++M  AA +LNF  AA
Sbjct: 603 GRVDTSEVNMTAYPIAEDHYAAAADVQKSYTASENIDALIDKAREEMERAAKSLNFLAAA 662

Query: 785 RIRDEIKRLKS 795
           + RD +  L+ 
Sbjct: 663 KFRDRMYELQK 673


>gi|29840717|ref|NP_829823.1| excinuclease ABC subunit B [Chlamydophila caviae GPIC]
 gi|33301869|sp|Q821H8|UVRB_CHLCV RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|29835067|gb|AAP05701.1| excinuclease ABC, subunit B [Chlamydophila caviae GPIC]
          Length = 656

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/660 (50%), Positives = 429/660 (65%), Gaps = 9/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P GDQP AIA+L +GI +  + Q+LLG TGSGKTFT+A V+  + RP +V+A
Sbjct: 3   FELRAAFAPCGDQPEAIAKLTQGIRNDVQSQVLLGTTGSGKTFTIANVVANVNRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYF+SYYDYYQPEAY+ R DTYIEK   IN +ID++R 
Sbjct: 63  HNKTLAAQLYQEFKEFFPNNAVEYFISYYDYYQPEAYIARNDTYIEKSLLINSEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSSVSCIYGIGS E+Y+ M ++LK+G    +  L + LVK  Y+  
Sbjct: 123 SATRSILERRDTLIVSSVSCIYGIGSPENYASMALELKVGKEYPRTLLAAQLVKMNYQ-A 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R TFR  G  I+IFP++  D A R+  F + +  I    PLT     +V +  IY
Sbjct: 182 SPVAQRSTFRERGSVIDIFPAYESDQAIRLEFFNDTLSSIEYSDPLTMIPTASVASTIIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A+  I+EEL+ R++      R +E  RL  R T+D+EM++ TG C+
Sbjct: 242 PGSHYVTPEAVREQAICSIREELEERMLFF--HDRPVEQDRLFHRTTHDIEMIKETGFCK 299

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ T   PG PP  L +Y PED LL +DESH T+PQI  MYRGD  RK +L EY
Sbjct: 300 GIENYSRHFTKMPPGAPPACLLDYFPEDFLLVIDESHQTLPQIRAMYRGDLSRKQSLVEY 359

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  EL + QG IVEQIIRPTG+ DP  E
Sbjct: 360 GFRLPSAYDNRPLTYEEAQKYFHNVIYVSATPGETELNESQGHIVEQIIRPTGIPDPIPE 419

Query: 561 IRSARTQVEDVYDEINLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           IR A  QV+D+ +EI     +   +IL+  +TK++AED+  +L E +I   Y+HS ++T 
Sbjct: 420 IRPATGQVDDLLEEIRKRLSKSQEKILVISITKKLAEDIAAFLSELDIAAAYLHSGIETA 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  I+ DLRLG  DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS +SLIQ  GRAA
Sbjct: 480 ERTRILADLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAA 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  KVI YAD  T+SI+  + ET RRR+ QL++NK +NI P+ + + I     P    
Sbjct: 540 RNVEGKVIFYADQKTRSIEQTLKETERRRQIQLDYNKANNITPKPIIKAIFANPIP---- 595

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
                  S +  +  LS K+ +  +K     M  AA    F+EAA+ RD++K  K    +
Sbjct: 596 -QGGKKESQEPAKTPLSIKELEKLIKKFENLMQEAAHEFRFDEAAKYRDKMKAAKEQLLY 654


>gi|15644506|ref|NP_229558.1| excinuclease ABC subunit B [Thermotoga maritima MSB8]
 gi|8134790|sp|Q9X282|UVRB_THEMA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|4982339|gb|AAD36825.1|AE001814_7 excinuclease ABC, subunit B [Thermotoga maritima MSB8]
          Length = 664

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/660 (48%), Positives = 449/660 (68%), Gaps = 4/660 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +++ P+GDQP AI +L++G++   + Q LLGVTGSGKTFTMA VI  + RPA+V+
Sbjct: 1   MFKLVSEFEPTGDQPQAIEKLVEGLNRGMRFQTLLGVTGSGKTFTMANVIARVNRPALVI 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           +PNK LAAQLY EFK FFP N VE+F+SYYDYYQPEAY+P  D YIEK + IN+ I RMR
Sbjct: 61  SPNKTLAAQLYQEFKTFFPENRVEFFISYYDYYQPEAYIPTKDLYIEKNADINDVIVRMR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            S  +S+  R D +VV+SVSCIY  G    + +M + L +GD ++  EL   L +  Y+R
Sbjct: 121 MSTLKSVRTRRDVVVVASVSCIYATGDPNDFDRMNINLAVGDRIDVLELAERLARIGYQR 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +   + G FR+ GD++EI+P++ ++   R+  FG++++ I+         + +++ I I
Sbjct: 181 TEDVSLSGCFRLKGDTVEIYPTYQDE-GIRIEFFGDEVDSITLIDRFNRTTLEHLDKIII 239

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    ++T    L  A++ I+EEL  RL EL+K+G++LE +RL+QR   D+E+LET G C
Sbjct: 240 YPAVEFITTEEKLKRAVESIREELNERLSELKKQGKILEYERLKQRTLNDIELLETMGYC 299

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GR PGEPP TL +Y  +D ++F+DESH+T+PQ+  MY GD  RK  L E
Sbjct: 300 PGIENYSRHFDGRKPGEPPYTLLDYFDKDFIVFIDESHITVPQLRAMYNGDRSRKKNLVE 359

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS  DNRPL FEE+       I VSATPG +EL   +  +VEQIIRPTGLVDP V
Sbjct: 360 YGFRLPSAYDNRPLTFEEFLKKTGQIIFVSATPGDFELSISEQ-VVEQIIRPTGLVDPEV 418

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    QV+D+ +EI    ++G R L+TVLTK+ AE L+E+L E  IR  Y+HSE+  +
Sbjct: 419 EVRPTAGQVDDLVNEIVKVKERGERALVTVLTKKTAELLSEHLTELGIRSLYLHSELDAI 478

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+E+++ LR G  DV+VG+NLLREGLD+PE  LVAI+DAD EGFLRS+T+LIQ IGR A
Sbjct: 479 ERVEVLKKLRRGDVDVVVGVNLLREGLDLPEVSLVAIMDADVEGFLRSETTLIQIIGRTA 538

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM-EVIDPILL 738
           RNVN KVI+YAD IT +++ AI+ET RRR  QLE+N+KH I P+SV + +  EV +  ++
Sbjct: 539 RNVNGKVIMYADRITNAMKRAIEETNRRRRIQLEYNRKHGITPRSVIKPLEIEVFEQFMV 598

Query: 739 EDAATTNISIDAQQLSLSKK-KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++              + K    + ++  L ++M+ AA  L +E+AA +RDE+ R++   
Sbjct: 599 KEEPERYGDTVKNIFEMKKTLSPEEYMAVLEEEMYRAASELRYEDAAALRDELFRIREEI 658


>gi|148270182|ref|YP_001244642.1| excinuclease ABC subunit B [Thermotoga petrophila RKU-1]
 gi|170288855|ref|YP_001739093.1| excinuclease ABC, B subunit [Thermotoga sp. RQ2]
 gi|281412475|ref|YP_003346554.1| excinuclease ABC, B subunit [Thermotoga naphthophila RKU-10]
 gi|189038009|sp|A5ILJ3|UVRB_THEP1 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238688838|sp|B1LAR2|UVRB_THESQ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|147735726|gb|ABQ47066.1| Excinuclease ABC subunit B [Thermotoga petrophila RKU-1]
 gi|170176358|gb|ACB09410.1| excinuclease ABC, B subunit [Thermotoga sp. RQ2]
 gi|281373578|gb|ADA67140.1| excinuclease ABC, B subunit [Thermotoga naphthophila RKU-10]
          Length = 664

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/660 (48%), Positives = 449/660 (68%), Gaps = 4/660 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +++ P+GDQP AI +L++G++   + Q LLGVTGSGKTFTMA VI  + RPA+V+
Sbjct: 1   MFKLVSEFEPTGDQPQAIEKLVEGLNRGMRFQTLLGVTGSGKTFTMANVIARVNRPALVI 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           +PNK LAAQLY EFK FFP N VE+F+SYYDYYQPEAY+P  D YIEK + IN+ I RMR
Sbjct: 61  SPNKTLAAQLYQEFKAFFPENRVEFFISYYDYYQPEAYIPTKDLYIEKNADINDVIVRMR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            S  +S+  R D +VV+SVSCIY  G    + +M + L +GD ++  EL   L +  Y+R
Sbjct: 121 MSTLKSVRTRRDVVVVASVSCIYATGDPNDFDRMNINLAVGDRIDVLELAERLARIGYQR 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +   + G FR+ GD++EI+P++ ++   R+  FG++++ I+         + +++ I I
Sbjct: 181 TEDVSLSGCFRLKGDTVEIYPTYQDE-GIRIEFFGDEVDSITLIDRFNRTTLEHLDKIII 239

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    ++T    L  A++ I+EEL  RL EL+K+G++LE +RL+QR   D+E+LET G C
Sbjct: 240 YPAVEFITTEEKLKRAVESIREELNERLSELKKQGKILEYERLKQRTLNDIELLETMGYC 299

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GR PGEPP TL +Y  +D ++F+DESH+T+PQ+  MY GD  RK  L E
Sbjct: 300 PGIENYSRHFDGRKPGEPPYTLLDYFDKDFIVFIDESHITVPQLRAMYNGDRSRKKNLVE 359

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS  DNRPL FEE+       I VSATPG +EL   +  +VEQIIRPTGLVDP V
Sbjct: 360 YGFRLPSAYDNRPLTFEEFLKKTGQIIFVSATPGDFELSISEQ-VVEQIIRPTGLVDPEV 418

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    QV+D+ +EI    ++G R L+TVLTK+ AE L+E+L E  IR  Y+HSE+  +
Sbjct: 419 EVRPTAGQVDDLVNEIVKVKERGERALVTVLTKKTAELLSEHLTELGIRSLYLHSELDAI 478

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+E+++ LR G  DV+VG+NLLREGLD+PE  LVAI+DAD EGFLRS+T+LIQ IGR A
Sbjct: 479 ERVEVLKKLRRGDVDVVVGVNLLREGLDLPEVSLVAIMDADVEGFLRSETTLIQIIGRTA 538

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM-EVIDPILL 738
           RN+N KVI+YAD IT +++ AI+ET RRR  QLE+NKKH I P+SV + +  EV +  ++
Sbjct: 539 RNINGKVIMYADRITNAMKRAIEETNRRRRIQLEYNKKHGITPRSVIKPLEIEVFEQFMV 598

Query: 739 EDAATTNISIDAQQLSLSKK-KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           ++              + K    + ++  L ++M+ AA  L +E+AA +RDE+ R++   
Sbjct: 599 KEEPERYGDTVKNIFEMKKTLSPEEYMAVLEEEMYRAASELRYEDAAALRDELFRIREEI 658


>gi|300521564|gb|ADK25993.1| UvrB [Candidatus Nitrososphaera gargensis]
          Length = 659

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/658 (49%), Positives = 451/658 (68%), Gaps = 16/658 (2%)

Query: 141 FQMQTD-YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
           F +  D + PSGDQP AI QL++G+    + Q LLGVTGSGKT+T+A VI    +  +V+
Sbjct: 8   FALAKDAFPPSGDQPEAIEQLVRGVQKGGR-QTLLGVTGSGKTYTIANVIARTNKNTLVI 66

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK LAAQLY+EFK FFP N V YFVS+YDYYQPE+Y+P+TDTYIEK++ +NE+I++MR
Sbjct: 67  SHNKTLAAQLYAEFKEFFPENNVGYFVSFYDYYQPESYIPQTDTYIEKDTEVNEKIEKMR 126

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             AT  L+     I+VS+VSCIY +GS + + +  + L  G  +++K L+ +L++ +Y+R
Sbjct: 127 LEATAMLMSGEPTIIVSTVSCIYSLGSPKEWEKSAITLTKGMEIDRKILIHNLIEARYER 186

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ ++ G FR  GD+I+I P + +D+  RVS+FG++IE IS    ++ +K+R+V  +KI
Sbjct: 187 NDMSLMPGNFRAKGDTIDIIPGYSDDI-IRVSVFGDEIERISIHDHVSMKKLRDVNAVKI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +   HY+T   + N+A++ IK EL+  L  L  E   LE QRL QR  YDLEM+E  G C
Sbjct: 246 FPAKHYITDDDSRNSALESIKRELENWLPNLPSE---LERQRLAQRTKYDLEMIEELGYC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+L GR PG+PP  L ++  +D LL +DESHVT+PQ+ GMY GD  RK  L +
Sbjct: 303 SGIENYSRHLDGRAPGQPPFCLLDFFGDDFLLVIDESHVTLPQLHGMYNGDHTRKKMLID 362

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS  DNRPL+FEE+       I VSATPG +EL +    + EQ++RPTGLVDP V
Sbjct: 363 YGFRLPSSYDNRPLKFEEFEKYLRNVIFVSATPGPYEL-KSSWQVAEQLVRPTGLVDPKV 421

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           EIR  + Q+ED+  EI   A++  R L+T LTKRMAEDL E+L +  +RVRY+HSE++ L
Sbjct: 422 EIRPTKNQMEDLIKEIKNRAKKNQRTLVTTLTKRMAEDLAEFLAKNEVRVRYLHSEIEGL 481

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER ++IR LRLG+FD LVGINLLREGLDIPE  LVAILDADKEGFLR+ TSLIQT GRAA
Sbjct: 482 ERTQLIRQLRLGEFDALVGINLLREGLDIPEVSLVAILDADKEGFLRNTTSLIQTFGRAA 541

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++  VI+Y+D  T+S++ AI+ET RRR+KQLE+NKKH I P+++ + I E    I   
Sbjct: 542 RNLDGAVIMYSDHSTESMKQAIEETERRRKKQLEYNKKHKIKPRTIVKPIPESTKEIGDM 601

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
              T          S++++            M   A+ L+FE+A   R+++ +++ + 
Sbjct: 602 SVETK---------SMTRQDLVKLAVETEATMKRFAEELDFEKAIMFREKLSKIRKAL 650


>gi|15835489|ref|NP_297248.1| excinuclease ABC subunit B [Chlamydia muridarum Nigg]
 gi|270285670|ref|ZP_06195064.1| excinuclease ABC subunit B [Chlamydia muridarum Nigg]
 gi|270289678|ref|ZP_06195980.1| excinuclease ABC subunit B [Chlamydia muridarum Weiss]
 gi|301337065|ref|ZP_07225267.1| excinuclease ABC subunit B [Chlamydia muridarum MopnTet14]
 gi|14195310|sp|Q9PJF4|UVRB_CHLMU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|7190903|gb|AAF39671.1| excinuclease ABC, subunit B [Chlamydia muridarum Nigg]
          Length = 676

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/666 (49%), Positives = 440/666 (66%), Gaps = 11/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +Q  + P GDQP AI QL +GI      Q+LLG TGSGKTFTMA VI  +  P +V+A
Sbjct: 18  FVLQAPFLPCGDQPEAIRQLSRGILDGIPSQVLLGTTGSGKTFTMANVIANVNVPTLVLA 77

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 78  HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 137

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G    + +L + LV+  Y+  
Sbjct: 138 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALILEVGKEYPRSQLSAQLVRMHYQ-A 196

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R  FR  G  I+IF ++  D+A R+    + +  I    PLT      V ++ +Y
Sbjct: 197 SASPQRSAFRERGSVIDIFLAYESDLAVRLEFVNDTLVSIEYTDPLTMIPSHTVPSVTLY 256

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ RL+  E  GR +E +RL QR T+D+EM++  G C+
Sbjct: 257 PGSHYVTPEAVREQAIRTIREELEQRLLFFE--GRPVEQERLFQRTTHDIEMIKEIGFCK 314

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PGEPP  L +Y PED LL +DESH T+PQ+  MYRGD  RK +L EY
Sbjct: 315 GIENYSRHFTGAAPGEPPTCLLDYFPEDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 374

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        + VSATPG  E+++ +G I+EQIIRPTG+ DP  E
Sbjct: 375 GFRLPSAFDNRPLTYEEARRYFRRVVYVSATPGELEVQESRGHIIEQIIRPTGIPDPLPE 434

Query: 561 IRSARTQVEDVYDEINLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           IR A  Q++D+ +EI    ++   +IL+  +TK++AED+  +L E  I   Y+HS ++T 
Sbjct: 435 IRPATGQIDDLLEEIRQRLRKDQEKILVVSVTKKLAEDIAAFLAELGIAAAYLHSGIETA 494

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +I+ DLRLG  DVL+G+NLLREG+D+PE  LVAILDADKEGFLRS  SLIQ  GRAA
Sbjct: 495 ERTQILTDLRLGTIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFCGRAA 554

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+ KVI YAD IT S+   + ET RRR+ QL++NKKHNI P+ + + I  + +PI  E
Sbjct: 555 RNVHGKVIFYADRITPSMDHMLKETERRRQIQLDYNKKHNITPKPIIKPI--LANPITKE 612

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
            A       D++  + S +  ++ +K   + M+ AA +  F+EAA+ RD +   K    F
Sbjct: 613 GAQE-----DSRPETQSTEDLESSIKQYEEAMYKAAQDFQFDEAAKYRDLMNAAKRQLLF 667

Query: 800 QGLDDS 805
           +  +D 
Sbjct: 668 KQGEDG 673


>gi|294660207|ref|NP_852820.2| excinuclease ABC subunit B [Mycoplasma gallisepticum str. R(low)]
 gi|284811857|gb|AAP56388.2| excinuclease ABC subunit B [Mycoplasma gallisepticum str. R(low)]
 gi|284930281|gb|ADC30220.1| excinuclease ABC subunit B [Mycoplasma gallisepticum str. R(high)]
          Length = 664

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/658 (45%), Positives = 431/658 (65%), Gaps = 4/658 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +   P+G QP AI +L+ GI+  +K Q LLG TG+GKTFT+A VIE  Q+  +++A
Sbjct: 6   FKLVSKNKPAGHQPEAIKKLVDGINKNKKYQTLLGATGTGKTFTIANVIEKTQKKTLILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK  FP+NAVEYFVSY+D+YQPEAY+PRTD YIEK S  N++I+ +R 
Sbjct: 66  HNKTLAAQLYLEFKELFPNNAVEYFVSYFDFYQPEAYIPRTDMYIEKSSVTNDEIEMLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           ++  SL  RND IVV+SV+CIY   + E +    + LK+G++++  +L  +L++  Y R 
Sbjct: 126 ASLNSLSTRNDVIVVASVACIYPAANPEDFDIYRIILKVGNTLKLSDLKENLIRLNYARS 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                 GTFR+ GD ++IFP ++ D   R+S FG+++EEI + +P     I    +  + 
Sbjct: 186 PECNEPGTFRIKGDVVDIFPGYVSDHIIRLSFFGDELEEIRKIHPTDSSVIEKYTSYVLG 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y+      +TA+K I+EEL  R+ E + + +L+EAQRL+QR  YD++ ++  G C 
Sbjct: 246 PANEYILNFERKDTAIKRIQEELMFRVQEFKNQQKLVEAQRLQQRTEYDIDAIKEFGFCN 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+ +L  R  G  P TLF++  +D L+ +DESH+++PQ+ GM+  D  RK TL EY
Sbjct: 306 GIENYAFHLELREKGSTPWTLFDFFGDDWLMVIDESHISVPQVKGMFNTDKSRKTTLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS ++NRPL ++E++      I VSATP   E++     I+EQI+RPTGL+DP VE
Sbjct: 366 GFRLPSALENRPLNYDEFSNKSDQVIFVSATPNDEEIKLSNNEIIEQIVRPTGLLDPTVE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q+ D+ +E+     +  R  +TV T +MAEDLTEYL ERN +  Y+H+E+KTLE
Sbjct: 426 IRPRLDQINDLMNELKKQKDKNERTFITVTTIKMAEDLTEYLKERNFKCAYIHNELKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  I+ DLR GK+D +VGINLLREGLDIPE  LV I DADK G+ RS  +LIQTIGRAAR
Sbjct: 486 RSLILNDLRRGKYDCVVGINLLREGLDIPEVSLVCIFDADKPGYFRSDKALIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +TK++++A+DET RRR+ Q + NK H I P+++ + I + +       
Sbjct: 546 NQNGRVIMYADEMTKAMKIAVDETNRRRKIQEKFNKDHKITPKTIIKPIYDDLK----NK 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           A+   I    ++      K    ++ LR +M  AA N N+E AA +RD I  L++   
Sbjct: 602 ASHKQIEEVMRKTKAKGDKFIKMIEDLRNEMLEAAKNQNYEHAASLRDLIIELETQQL 659


>gi|134045892|ref|YP_001097378.1| excinuclease ABC subunit B [Methanococcus maripaludis C5]
 gi|132663517|gb|ABO35163.1| Excinuclease ABC subunit B [Methanococcus maripaludis C5]
          Length = 646

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/665 (49%), Positives = 449/665 (67%), Gaps = 29/665 (4%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSR--EKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
             F+++ D+ P G QP AIA+L+  +     +  Q LLGVTGSGKTFT+A VIE +Q+P 
Sbjct: 4   PNFKLKADFEPKGSQPEAIAELVNELEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPT 63

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LAAQLY+EFK FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +I+
Sbjct: 64  LVIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQRDQYIEKDAQINPKIE 123

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR  AT ++L R D I+V+SVSCIYG+G+ E + +M  +LK+G+ +++ +++  LV  Q
Sbjct: 124 QMRLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQ 183

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R D+ ++ G FRV GD+++I P + +D+  RV MFG++I+ + E  P    K   +++
Sbjct: 184 YERNDMELVPGRFRVKGDTLDIIPGYQDDI-LRVEMFGDEIDRMYELDPKNMTKKHELDS 242

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y   H+V P      A+  I +EL   L  L     +L++ RL+Q+  YD+EM+E T
Sbjct: 243 FYMYPAKHFVIPEEDKKNAITSILKELDEWLPHL----DMLKSHRLKQKTLYDIEMIEET 298

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           GSC+ IENYSR+   R  GEP   L +Y P+D L+ +DESH TIPQI GMY+GD  RK +
Sbjct: 299 GSCKGIENYSRHFENRKEGEPAYCLLDYFPDDFLIVIDESHQTIPQIRGMYKGDRSRKQS 358

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS  DNRPLRFEE+       I VSATPG +EL++    +VEQIIRPTGL+D
Sbjct: 359 LIDYGFRLPSAYDNRPLRFEEFKKYMNNVIFVSATPGDYELDKSNQ-VVEQIIRPTGLLD 417

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P VEIR    QVED+  E     ++G R+L+T LTKR+AE+LTEYL +RN++ RY+HS++
Sbjct: 418 PEVEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDI 477

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER EIIR+LRLGKFD LVGINLLREGLDIPE G V ILDADKEGFLR+  SLIQTIG
Sbjct: 478 DTIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIG 537

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM----EV 732
           RAARN NSKV+LYA+ +T SI+ A+ ET RRR  Q E+N+KHNI P+++ + I     ++
Sbjct: 538 RAARNANSKVVLYANKMTDSIKKAVFETERRRNLQKEYNEKHNIAPKTIVKPIREKVVDI 597

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            D   +  A   N+ I+ +       +                    FE+A +IRD I +
Sbjct: 598 SDVKHIPVADIPNVVIELEAEMYEAAEALE-----------------FEKAIKIRDTIAK 640

Query: 793 LKSSP 797
           LK   
Sbjct: 641 LKKKI 645


>gi|260773212|ref|ZP_05882128.1| excinuclease ABC subunit B [Vibrio metschnikovii CIP 69.14]
 gi|260612351|gb|EEX37554.1| excinuclease ABC subunit B [Vibrio metschnikovii CIP 69.14]
          Length = 600

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/597 (53%), Positives = 427/597 (71%), Gaps = 11/597 (1%)

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            K+FFPHNAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR SAT++LLER D 
Sbjct: 1   MKSFFPHNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNSHIEQMRLSATKALLERKDA 60

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           I+V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R D+   RG FRV 
Sbjct: 61  IIVASVSAIYGLGDPDSYLKMMLHLRRGDVLNQRDMLRRLAELQYSRNDVAFERGQFRVR 120

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK-IRNVETIKIYANSHYVTPRPT 391
           G+ I+IFP+  E  A RV MF ++IE IS F PLTG    R++    +Y  +HYVTPR  
Sbjct: 121 GEVIDIFPAESEQEAVRVEMFDDEIECISLFDPLTGVIRQRDLARFTVYPKTHYVTPRER 180

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           +  A++ IK+EL++R   L    +LLE QR+ QR  +D+EM+   G C  IENYSRYL+G
Sbjct: 181 ILDAIEQIKQELQLRRQTLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSG 240

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
           R+ GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK TL E+GFRLPS +DNR
Sbjct: 241 RSAGEPPPTLFDYLPHDGLLVIDESHVTVPQIGAMYKGDRSRKETLVEFGFRLPSALDNR 300

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           PL+FEE+  L P TI VSATP ++ELE+  G +VEQ++RPTGL+DP +E+R   TQV+D+
Sbjct: 301 PLKFEEFEALAPQTIFVSATPSAYELEKSAGDVVEQVVRPTGLLDPEIEVRPVATQVDDL 360

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             EI + A +  R+L+T LTKRMAEDLTEYL+E  ++VRY+HS++ T+ER+EIIRDLRLG
Sbjct: 361 LSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTVERVEIIRDLRLG 420

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
            FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR++  K ILY D
Sbjct: 421 VFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARHLRGKAILYGD 480

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI--- 748
            ITKS++ AIDET RRREKQ  +N++  I PQ+++  I ++++            S    
Sbjct: 481 NITKSMRKAIDETERRREKQQAYNQQRGIEPQALRRSIKDIMELGDATKPKQQKASKVVP 540

Query: 749 -------DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
                   A    L+ ++ +  +  L  +M+  A +L FE AA+ RD+I +L+    
Sbjct: 541 LAKVAEPGASYDLLTPQQLEKQIMKLEAEMYKHAQDLEFELAAQKRDQITQLRQQFI 597


>gi|89897859|ref|YP_514969.1| excinuclease ABC subunit B [Chlamydophila felis Fe/C-56]
 gi|89331231|dbj|BAE80824.1| excision nuclease helicase subunit B [Chlamydophila felis Fe/C-56]
          Length = 656

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/660 (50%), Positives = 438/660 (66%), Gaps = 9/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++ D+ P GDQPAAIA+L +G+ ++ + Q+LLG TGSGKTFT+A V+  + RP +V+A
Sbjct: 3   FELRADFAPCGDQPAAIAKLTQGVRNQAQFQVLLGTTGSGKTFTIANVVANINRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYF+SYYDYYQPEAY+ R DTYIEK   IN +ID++R 
Sbjct: 63  HNKTLAAQLYQEFKEFFPNNAVEYFISYYDYYQPEAYIARNDTYIEKSLLINSEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSSVSCIYGIGS ++Y+ M ++L+I     +  L S LVK  Y+  
Sbjct: 123 SATRSILERRDTLIVSSVSCIYGIGSPDNYASMALELEIEKEYPRSLLTSQLVKMNYQ-A 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R TFR  G  I+IFP++  D A R++ F + +  I    PLT   + +V ++ IY
Sbjct: 182 SPVAQRATFRERGSVIDIFPAYESDRAIRLAFFNDTLTSIEYNDPLTMMPLESVASVIIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ R++      R +E  RL QR  +D+EM++ TG C+
Sbjct: 242 PGSHYVTPEAVREQAIRSIREELEERMLFF--HDRPIEQDRLFQRTIHDIEMIKETGFCK 299

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ T   PG PP  L +Y PED LL +DESH T+PQ+  MYRGD  RK +L EY
Sbjct: 300 GIENYSRHFTKTPPGSPPACLLDYFPEDFLLVIDESHQTLPQMRAMYRGDLSRKQSLVEY 359

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  EL + +G +VEQIIRPTG+ DP  E
Sbjct: 360 GFRLPSAYDNRPLTYEEARKYFHNVIYVSATPGEMELNESRGHVVEQIIRPTGIPDPIPE 419

Query: 561 IRSARTQVEDVYDEINLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           IR A  QV+D+ +EI     +   +IL+  +TK++AED+  +L E +I   Y+HS ++T 
Sbjct: 420 IRPATGQVDDLLEEIRKRLSKSQEKILVISITKKLAEDIAAFLSELDIAAAYLHSGIETA 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  I+ DLRLG  DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS +SLIQ  GRAA
Sbjct: 480 ERTRILTDLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAA 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV  KVI YAD  T+SI+  + ET RRR+ QLE+NK HNI PQ + + I+    P   +
Sbjct: 540 RNVEGKVIFYADQKTQSIEQTLKETERRRKIQLEYNKAHNITPQPIIKAILANPIPQGRK 599

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
                N+     ++ LS K+ +  +K     M  AA    F+EAA+ RD++K  K    +
Sbjct: 600 QETQDNL-----KMPLSTKELEKLIKKYENLMQQAAHEFRFDEAAKYRDKMKAAKEQLLY 654


>gi|45358290|ref|NP_987847.1| excinuclease ABC subunit B [Methanococcus maripaludis S2]
 gi|74579596|sp|Q6LZA2|UVRB_METMP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|44921048|emb|CAF30283.1| excinuclease ABC subunit B [Methanococcus maripaludis S2]
          Length = 646

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/661 (50%), Positives = 443/661 (67%), Gaps = 21/661 (3%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSR--EKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
             F+++ ++ P G Q  AIA L+K +     +  Q LLGVTGSGKTFT+A VIE +Q+P 
Sbjct: 4   PDFKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPT 63

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LAAQLY+EFK FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +I+
Sbjct: 64  LVIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIE 123

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR  AT ++L R D I+V+SVSCIYG+G+ E + +M  +LK+G+ +++ +++  LV  Q
Sbjct: 124 QMRLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQ 183

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R D+ ++ G FRV GD+++I P + +D+  RV MFG++I+ I E  P    K   +++
Sbjct: 184 YERNDMELVPGRFRVKGDTLDIIPGYQDDI-LRVEMFGDEIDRIYELDPKNMSKKHEIDS 242

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             +Y   H+V P      A+  I +EL   L  L     +L++ RL+Q+  YD+EM+E T
Sbjct: 243 FYMYPAKHFVIPEEDKKNAINSILKELDEWLPNL----DMLKSHRLKQKTLYDIEMIEET 298

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           GSC+ IENYSR+   R  GEP   L +Y PED L+ +DESH TIPQI GMY+GD  RK +
Sbjct: 299 GSCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQS 358

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS  DNRPL+FEE+       I VSATPG +EL+     +VEQIIRPTGL+D
Sbjct: 359 LIDYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSNQ-VVEQIIRPTGLLD 417

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P VEIR    QVED+  E     ++G R+L+T LTKR+AE+LTEYL +RN++ RY+HS++
Sbjct: 418 PEVEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDI 477

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T+ER EIIR+LRLGKFD LVGINLLREGLDIPE G V ILDADKEGFLR+  SLIQTIG
Sbjct: 478 DTIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIG 537

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN NSKV+LYA  +T SI+ A+ ET RRR+ Q EHN+KHNI PQ++ + I E +  I
Sbjct: 538 RAARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKVVDI 597

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                       +      ++    A                 FE+A +IRD I +LK  
Sbjct: 598 SDVKHIPVADIPNVIVELEAEMYEAAEALE-------------FEKAIKIRDTIAKLKKK 644

Query: 797 P 797
            
Sbjct: 645 I 645


>gi|237804937|ref|YP_002889091.1| excinuclease ABC subunit B [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273237|emb|CAX10150.1| excinuclease ABC subunit B [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 668

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/666 (48%), Positives = 436/666 (65%), Gaps = 13/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   + P GDQP AI +L +GI      Q+LLG TGSGKTFTMA VI  +  P +V+A
Sbjct: 10  FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVIANVNVPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 70  HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G    + +L S LV+  Y+  
Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R  FR  G  I+IF ++  D+A R+    + +  I    PLT        +I +Y
Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ R++  E  GR +E +RL QR T+D+EM++  G C+
Sbjct: 249 PGSHYVTPEAVREQAIRTIREELEQRMLFFE--GRPVEQERLFQRTTHDIEMIKEIGFCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PGEPP  L +Y P+D LL +DESH T+PQ+  MYRGD  RK +L EY
Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  E+++ +G I+EQIIRPTG+ DP  E
Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDPLPE 426

Query: 561 IRSARTQVEDVYDEINLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           IR A+ Q++D+ +EI    ++   +IL+  +TK++AED+  +L E  I   Y+HS ++T 
Sbjct: 427 IRPAKGQIDDLLEEIRQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAATYLHSGIETA 486

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +I+ DLRLG  DVL+G+NLLREG+D+PE  LVAILDADKEGFLRS  SLIQ  GRAA
Sbjct: 487 ERTQILTDLRLGNIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFCGRAA 546

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++ KVI YAD IT S+   + ET RRR+ QL++N++H I PQ + + I        L 
Sbjct: 547 RNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPI--------LA 598

Query: 740 DAATTNISIDAQQLSL-SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           +  T     +  +L + S K+ +A +K+  + M+ AA    F+EAA+ RD +   K    
Sbjct: 599 NPITKEAGQEETRLKMQSSKELEASIKTYEEAMYQAAQEFQFDEAAKYRDLMNAAKKQLL 658

Query: 799 FQGLDD 804
           FQ  ++
Sbjct: 659 FQKGEE 664


>gi|15605315|ref|NP_220101.1| excinuclease ABC subunit B [Chlamydia trachomatis D/UW-3/CX]
 gi|237803015|ref|YP_002888209.1| excinuclease ABC subunit B [Chlamydia trachomatis B/Jali20/OT]
 gi|6226295|sp|O84590|UVRB_CHLTR RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|3329029|gb|AAC68188.1| Exinuclease ABC Subunit B [Chlamydia trachomatis D/UW-3/CX]
 gi|231274249|emb|CAX11043.1| excinuclease ABC subunit B [Chlamydia trachomatis B/Jali20/OT]
 gi|296436120|gb|ADH18294.1| excinuclease ABC subunit B [Chlamydia trachomatis G/9768]
 gi|296437980|gb|ADH20141.1| excinuclease ABC subunit B [Chlamydia trachomatis G/11074]
 gi|297140482|gb|ADH97240.1| excinuclease ABC subunit B [Chlamydia trachomatis G/9301]
 gi|297748716|gb|ADI51262.1| Excinuclease ABC subunit B [Chlamydia trachomatis D-EC]
 gi|297749596|gb|ADI52274.1| Excinuclease ABC subunit B [Chlamydia trachomatis D-LC]
          Length = 668

 Score =  728 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/666 (48%), Positives = 436/666 (65%), Gaps = 13/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   + P GDQP AI +L +GI      Q+LLG TGSGKTFTMA VI  +  P +V+A
Sbjct: 10  FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVIANVNVPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 70  HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G    + +L S LV+  Y+  
Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R  FR  G  I+IF ++  D+A R+    + +  I    PLT        +I +Y
Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ R++  E  GR +E +RL QR T+D+EM++  G C+
Sbjct: 249 PGSHYVTPEAVREQAIRTIREELEQRMLFFE--GRPVEQERLFQRTTHDIEMIKEIGFCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PGEPP  L +Y P+D LL +DESH T+PQ+  MYRGD  RK +L EY
Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  E+++ +G I+EQIIRPTG+ DP  E
Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDPLPE 426

Query: 561 IRSARTQVEDVYDEINLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           IR A+ Q++D+ +EI    ++   +IL+  +TK++AED+  +L E  I   Y+HS ++T 
Sbjct: 427 IRPAKGQIDDLLEEIRQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAATYLHSGIETA 486

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +I+ DLRLG  DVL+G+NLLREG+D+PE  LVAILDADKEGFLRS  SLIQ  GRAA
Sbjct: 487 ERTQILTDLRLGNIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFCGRAA 546

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++ KVI YAD IT S+   + ET RRR+ QL++N++H I PQ + + I        L 
Sbjct: 547 RNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPI--------LA 598

Query: 740 DAATTNISIDAQQLSL-SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           +  T     +  +L + S K+ +A +K+  + M+ AA    F+EAA+ RD +   K    
Sbjct: 599 NPITKEAGQEETRLKMQSSKELEASIKTYEEAMYQAAQEFQFDEAAKYRDLMNAAKKQLL 658

Query: 799 FQGLDD 804
           FQ  ++
Sbjct: 659 FQKGEE 664


>gi|255311406|ref|ZP_05353976.1| excinuclease ABC subunit B [Chlamydia trachomatis 6276]
 gi|255317707|ref|ZP_05358953.1| excinuclease ABC subunit B [Chlamydia trachomatis 6276s]
          Length = 668

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/666 (48%), Positives = 436/666 (65%), Gaps = 13/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   + P GDQP AI +L +GI      Q+LLG TGSGKTFTMA VI  +  P +V+A
Sbjct: 10  FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVIANVNVPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 70  HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G    + +L S LV+  Y+  
Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R  FR  G  I+IF ++  D+A R+    + +  I    PLT        +I +Y
Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ R++  E  GR +E +RL QR T+D+EM++  G C+
Sbjct: 249 PGSHYVTPEAVREQAIRTIREELEQRMLFFE--GRPVEQERLFQRTTHDIEMIKEIGFCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PGEPP  L +Y P+D LL +DESH T+PQ+  MYRGD  RK +L EY
Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  E+++ +G I+EQIIRPTG+ DP  E
Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDPLPE 426

Query: 561 IRSARTQVEDVYDEINLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           IR A+ Q++D+ +EI    ++   +IL+  +TK++AED+  +L E  I   Y+HS ++T 
Sbjct: 427 IRPAKGQIDDLLEEIRQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAATYLHSGIETA 486

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +I+ DLRLG  DVL+G+NLLREG+D+PE  LVAILDADKEGFLRS  SLIQ  GRAA
Sbjct: 487 ERTQILTDLRLGNIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFCGRAA 546

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++ KVI YAD IT S+   + ET RRR+ QL++N++H I PQ + + I        L 
Sbjct: 547 RNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPI--------LA 598

Query: 740 DAATTNISIDAQQLSL-SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           +  T     +  +L + S K+ +A +K+  + M+ AA    F+EAA+ RD +   K    
Sbjct: 599 NPITKEAGQEETRLKMQSSKELEASIKTYEEAMYQAAQKFQFDEAAKYRDLMNAAKKQLL 658

Query: 799 FQGLDD 804
           FQ  ++
Sbjct: 659 FQKGEE 664


>gi|166154801|ref|YP_001654919.1| excinuclease ABC subunit B [Chlamydia trachomatis 434/Bu]
 gi|166155676|ref|YP_001653931.1| excinuclease ABC subunit B [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336077|ref|ZP_07224321.1| excinuclease ABC subunit B [Chlamydia trachomatis L2tet1]
 gi|165930789|emb|CAP04286.1| excinuclease ABC subunit B [Chlamydia trachomatis 434/Bu]
 gi|165931664|emb|CAP07240.1| excinuclease ABC subunit B [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 668

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/666 (48%), Positives = 435/666 (65%), Gaps = 13/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   + P GDQP AI +L +GI      Q+LLG TGSGKTFTMA VI  +  P +V+A
Sbjct: 10  FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVIANVNVPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 70  HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G    + +L S LV+  Y+  
Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R  FR  G  I+IF ++  D+A R+    + +  I    PLT        +I +Y
Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ R++  E  GR +E +RL QR T+D+EM++  G C+
Sbjct: 249 PGSHYVTPEAVREQAIRTIREELEQRMLFFE--GRPVEQERLFQRTTHDIEMIKEIGFCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PGEPP  L +Y P+D LL +DESH T+PQ+  MYRGD  RK +L EY
Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  E+++ +G I+EQIIRPTG+ D   E
Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDLLPE 426

Query: 561 IRSARTQVEDVYDEINLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           IR A+ Q++D+ +EI    ++   +IL+  +TK++AED+  +L E  I   Y+HS ++T 
Sbjct: 427 IRPAKGQIDDLLEEIRQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAAAYLHSGIETA 486

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +I+ DLRLG  DVL+G+NLLREG+D+PE  LVAILDADKEGFLRS  SLIQ  GRAA
Sbjct: 487 ERTQILTDLRLGNIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFCGRAA 546

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++ KVI YAD IT S+   + ET RRR+ QL++N++H I PQ + + I        L 
Sbjct: 547 RNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPI--------LA 598

Query: 740 DAATTNISIDAQQLSL-SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           +  T     +  +L + S K+ +A +K+  + M+ AA    F+EAA+ RD +   K    
Sbjct: 599 NPITKEAGQEETRLKMQSSKELEASIKTYEEAMYQAAQEFQFDEAAKYRDLMNAAKKQLL 658

Query: 799 FQGLDD 804
           FQ  ++
Sbjct: 659 FQKGEE 664


>gi|118575739|ref|YP_875482.1| excinuclease helicase subunit [Cenarchaeum symbiosum A]
 gi|118194260|gb|ABK77178.1| excinuclease helicase subunit [Cenarchaeum symbiosum A]
          Length = 649

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/660 (49%), Positives = 436/660 (66%), Gaps = 20/660 (3%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + +++ P+GDQP AI  L  G+  +  +Q LLGVTGSGKTFT+A VI    +  +
Sbjct: 4   VRKFDLVSEFAPTGDQPEAIDALASGVRKKS-LQTLLGVTGSGKTFTVANVIARTGKNTL 62

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY+E K FFP N V YFVSYYDYYQPE+Y+ +TDTYIEK++ +NEQI++
Sbjct: 63  VISHNKTLAAQLYAELKQFFPGNNVGYFVSYYDYYQPESYMVQTDTYIEKDTVVNEQIEK 122

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR   T  LL     IVVS+VSCIY +G+ + + +M + L+ G    + +++  LV  +Y
Sbjct: 123 MRLETTAMLLSGEPTIVVSTVSCIYSLGNPDDWDEMAITLEEGRGAGRADVIRRLVDARY 182

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+ +  G FRV GD+I++ P++ +DV  R+SMFG+++E IS    +T  + + V TI
Sbjct: 183 ERNDVELAPGNFRVRGDTIDVIPAYSQDV-VRISMFGDEVERISVLDRMTMDEKQRVGTI 241

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
           +++   HY+        A+  IK ELK RL EL +    LE QRLE R +YDLEM+E  G
Sbjct: 242 RVFPAKHYLIAGDARKRALGSIKSELKSRLPELRE----LERQRLEMRTSYDLEMIEELG 297

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+  GR PGEP   L ++   D LL +DESHVT+PQ+ GMY+GD  RK  L
Sbjct: 298 YCSGIENYSRHFDGRKPGEPAFCLLDFFGPDFLLVIDESHVTLPQLHGMYKGDHSRKGEL 357

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
             YGFRLPS  DNRPL+FEE+       I VSATP  +E  +    IVEQ++RPTGL+DP
Sbjct: 358 ITYGFRLPSAYDNRPLKFEEFEGYLKNVIFVSATPSEYERTKSAE-IVEQLVRPTGLLDP 416

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
             EIR  + Q++D+  EI   A++  R L+T LTKRMAEDL E+L +R +RVRYMHSE++
Sbjct: 417 VAEIRPTKGQMDDLVSEIGACAKRDERALVTTLTKRMAEDLAEFLSKRKVRVRYMHSEIE 476

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            L+R E+IR LRLG+FDVLVGINLLREGLDIPE  LVAILDADKEGFLR+ TSLIQT GR
Sbjct: 477 GLQRTELIRQLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNMTSLIQTFGR 536

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN   +VI+YAD  T S++ A+DET RRRE+Q E+N +H I P+S+ + I E    + 
Sbjct: 537 AARNSAGRVIMYADRTTASMKNALDETARRRERQSEYNVQHGITPRSITKAIPE--QTVK 594

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           L+D               S       +  L   M   A+ L+FE+A   RD+I+RL+   
Sbjct: 595 LDDVKHK-----------SPHDISREIIELEASMKRHAEELSFEKAIECRDQIRRLREGM 643


>gi|284931048|gb|ADC30986.1| excinuclease ABC subunit B [Mycoplasma gallisepticum str. F]
          Length = 664

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/660 (45%), Positives = 430/660 (65%), Gaps = 4/660 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +   P+G QP AI +L+ GI+  +K Q LLG TG+GKTFT+A VIE  Q+  +++A
Sbjct: 6   FKLVSKNKPAGHQPEAIKKLVDGINKNKKYQTLLGATGTGKTFTIANVIEKTQKKTLILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK  FP+NAVEYFVSY+D+YQPEAY+PRTD YIEK S  N++I+ +R 
Sbjct: 66  HNKTLAAQLYLEFKELFPNNAVEYFVSYFDFYQPEAYIPRTDMYIEKSSVTNDEIEMLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           ++  SL  RND IVV+SV+CIY   + E +    + LK+G++++  +L  +L++  Y R 
Sbjct: 126 ASLNSLSTRNDVIVVASVACIYPAANPEDFDIYRIILKVGNTLKLSDLKENLIRLNYARS 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                 GTFR+ GD ++IFP ++ D   R+S FG+++EEI + +P     I    +  + 
Sbjct: 186 PECNEPGTFRIKGDVVDIFPGYVNDHIIRLSFFGDELEEIRKIHPTDSSVIEKYTSYVLG 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y+      +TA+K I+EEL  R+ E + + +L+EAQRL+QR  YD++ ++  G C 
Sbjct: 246 PANEYILNFERKDTAIKRIQEELMFRVQEFKNQQKLVEAQRLQQRTEYDIDAIKEFGFCN 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+ +L  R  G  P TLF++   D L+ +DESH+++PQ+ GM+  D  RK TL EY
Sbjct: 306 GIENYAFHLELREKGSTPWTLFDFFGNDWLMVIDESHISVPQVKGMFNTDKSRKTTLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS ++NRPL ++E++      I VSATP   E++     I+EQI+RPTGL+DP VE
Sbjct: 366 GFRLPSALENRPLNYDEFSNKSDQVIFVSATPNDEEIKLSNNEIIEQIVRPTGLLDPTVE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    Q+ D+ +E+     +  R  +TV T ++AEDLTEYL ERN +  Y+H+E+KTLE
Sbjct: 426 IRPRLDQINDLMNELKKQKDKNERTFITVTTIKIAEDLTEYLKERNFKCAYIHNELKTLE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  I+ DLR GK+D +VGINLLREGLDIPE  LV I DADK G+ RS  +LIQTIGRAAR
Sbjct: 486 RSLILNDLRRGKYDCVVGINLLREGLDIPEVSLVCIFDADKPGYFRSDKALIQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N +VI+YAD +TK++++A+DET RRRE Q + NK H I P+++ + I   +       
Sbjct: 546 NQNGRVIMYADEMTKAMKIAVDETNRRREIQEKFNKDHKITPKTIIKPIYNDL----RNK 601

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
           A+   I    ++      K    ++ LR +M  AA N N+E AA +RD I  L++    +
Sbjct: 602 ASHKQIEEAMRKTKAKGDKFIKMIEDLRNEMLEAAKNQNYEHAASLRDLIIELETQQLNK 661


>gi|307299265|ref|ZP_07579066.1| excinuclease ABC, B subunit [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915061|gb|EFN45447.1| excinuclease ABC, B subunit [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 668

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/665 (49%), Positives = 445/665 (66%), Gaps = 10/665 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F+M + Y P GDQP AI +L+ G+ S ++ Q LLGVTGSGKTFTMA VI  +QRPAIV+
Sbjct: 2   LFEMDSSYSPQGDQPQAIEKLIDGLKSGDRFQTLLGVTGSGKTFTMANVISTLQRPAIVI 61

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           +PNK L AQLY EFK FFP N VE F+SYYDYY PE+Y+P  D +IEKE+ INE ++RMR
Sbjct: 62  SPNKTLVAQLYREFKTFFPKNKVELFISYYDYYMPESYIPSKDLFIEKEAEINETLERMR 121

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA +S+L RND +V++SVS IY  G  + ++ M + L+ G S+ +KEL   L   QY R
Sbjct: 122 ISALKSVLTRNDTVVLASVSAIYASGDPKDFATMNIFLERGKSINRKELALKLANIQYNR 181

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +     G F V G+  EIFP + ED   R+  F ++IE I  F P+  + I  ++ + +
Sbjct: 182 SEDVSAGGVFHVKGEIFEIFPPY-EDFGIRLYFFDDEIERIVSFDPINRKTIEELDMVTV 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +VT +  +  AM+ I+ EL+ R+ +LE+EG+ LEAQRL QR TYD+EML + G C
Sbjct: 241 YPAKEFVTTQDKILGAMRNIENELEERVKQLEREGKYLEAQRLRQRTTYDMEMLSSVGYC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIP-EDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
             IENYSR+  GR PGE P TL +Y   E  + F+DESH+ +PQ+  MYRGD+ RK  L 
Sbjct: 301 SGIENYSRFFDGRMPGEKPYTLLDYFDREKFITFIDESHIGVPQLGAMYRGDYSRKKNLV 360

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLP+  DNRPL+FEE+       + VSATPG++E E     I++Q+IRPTGLVDP 
Sbjct: 361 DYGFRLPAAFDNRPLKFEEFLSTVGQIVFVSATPGNFEAEHS-TRIIDQVIRPTGLVDPE 419

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V +    +QV+D  + +    ++  R L+TVLTK+ AE L++YL E  IR  Y+HSE+  
Sbjct: 420 VIVHPTESQVDDFIERMREVKKRNERALVTVLTKKAAEMLSDYLNEVGIRSEYLHSELDA 479

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER+E++R LR G  +V+VG+NLLREGLD+PE  LVAI+DADKEGFLRS+T+LIQTIGRA
Sbjct: 480 IERVEVLRKLRDGTVEVVVGVNLLREGLDLPEVSLVAIMDADKEGFLRSETTLIQTIGRA 539

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK----IMEVID 734
           ARNVN +VILYADT+T S++ AIDET RRR KQL +NK+HNI P+S+ +     I E   
Sbjct: 540 ARNVNGQVILYADTMTGSMKRAIDETNRRRLKQLIYNKEHNITPESIVKPLYRNIFEEFA 599

Query: 735 PILLEDAATTNISIDAQQLSLSKKKG---KAHLKSLRKQMHLAADNLNFEEAARIRDEIK 791
              L+            +  ++ K+    + ++  L ++M  AA  L FE+AA +RDE+ 
Sbjct: 600 GENLDKEREDKARATYLEGVMALKESLDYEDYIALLNEEMIRAAGELRFEDAAILRDEMY 659

Query: 792 RLKSS 796
            LK S
Sbjct: 660 SLKKS 664


>gi|157364900|ref|YP_001471667.1| excinuclease ABC subunit B [Thermotoga lettingae TMO]
 gi|189038008|sp|A8F8W9|UVRB_THELT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|157315504|gb|ABV34603.1| excinuclease ABC, B subunit [Thermotoga lettingae TMO]
          Length = 656

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/658 (48%), Positives = 437/658 (66%), Gaps = 8/658 (1%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +DY P+GDQP AI +L++GI    + Q L+GVTGSGKTFTMA VI  + RPA+V+
Sbjct: 1   MFKLVSDYEPTGDQPQAIDRLVEGIKKGYRFQTLIGVTGSGKTFTMANVISRLNRPALVI 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           +PNK LAAQLY EFK FFPHN VEYF+SYYDYYQPEAYVP  D YIEK + IN+ + RMR
Sbjct: 61  SPNKTLAAQLYGEFKTFFPHNRVEYFISYYDYYQPEAYVPTKDLYIEKNADINDVLVRMR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA +S+  R D +VV+SVS IY  G    + +M +QL  G  +    +   L K  Y+R
Sbjct: 121 MSALKSVRTRRDVVVVASVSSIYASGDPSDFDRMNIQLSTGLKISPHAVAQHLAKIGYER 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +   ++G FR+ GD +EI+P++ ++   R+  FG+ ++ I  F  L    +  ++ I I
Sbjct: 181 SNEITVKGCFRLRGDVLEIYPTYQDE-GIRIEFFGSVVDRIETFDKLNRSPLEELQKIII 239

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y    +VT    L  A++ IK EL  RL EL+ +G++LEAQRL+QR  +DLE+L   G C
Sbjct: 240 YPAIEFVTTEEKLKRAVESIKNELDQRLTELKNQGKILEAQRLQQRTMHDLELLSALGYC 299

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSR+  GR PGEPP TL +Y  +D L+F+DESH+ +PQ+  M+RG+  RK +L E
Sbjct: 300 PGIENYSRHFDGRKPGEPPYTLLDYFDDDVLVFLDESHIAVPQLRAMWRGEHSRKKSLVE 359

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS  DNRPL FEE+    P  I VSATPG +E +  +  IVEQIIRPTGL+DP V
Sbjct: 360 YGFRLPSAFDNRPLTFEEFLKKVPQIIFVSATPGPFEYQVSEQ-IVEQIIRPTGLIDPEV 418

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R  + QV+D+  EI    ++G R L+TVLTK+ AE L+EYL E  I+  Y+HSE+  +
Sbjct: 419 EVRPTKYQVDDLISEIKKVVERGERALITVLTKKTAEKLSEYLVEMGIKSLYIHSELDAI 478

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ERIE+++ LR G  D +VGINLLREGLD+PE  LVAILD+DKEGFLRS+T+LIQ IGR A
Sbjct: 479 ERIEVLKKLRRGDVDAVVGINLLREGLDLPEVSLVAILDSDKEGFLRSETTLIQIIGRVA 538

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N KV++YAD +T ++Q AIDET RRR+ Q+E+N+K+ I P+++ + +   I    +E
Sbjct: 539 RNLNGKVLMYADRVTPAMQRAIDETNRRRKIQMEYNEKYGITPKTIVKPLQIEIFEKFME 598

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                   +                     +M+ AA  L +E+AA++RDEI RL+   
Sbjct: 599 KPEIDYHQLAKDLSKEEYLSLLEE------EMYRAASELRYEDAAKLRDEIFRLREEL 650


>gi|150403661|ref|YP_001330955.1| excinuclease ABC subunit B [Methanococcus maripaludis C7]
 gi|150034691|gb|ABR66804.1| excinuclease ABC, B subunit [Methanococcus maripaludis C7]
          Length = 646

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/667 (49%), Positives = 446/667 (66%), Gaps = 29/667 (4%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSR--EKVQLLLGVTGSGKTFTMAKVIEAMQR 194
               F+++ D+ P G QP AIA+L+  +     +  Q LLGVTGSGKTFT+A VIE +Q+
Sbjct: 2   SFPDFKLKADFKPKGSQPDAIAELVNDLEKNSEKSKQTLLGVTGSGKTFTIANVIEKVQK 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+A NK LAAQLY+EFK+FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +
Sbjct: 62  PTLVIAHNKTLAAQLYNEFKDFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPK 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           I++MR  AT ++L R D I+V+SVSCIYG+G+ + + +M  +LK G+ +++  ++  LV 
Sbjct: 122 IEQMRLRATSAILSRRDVIIVASVSCIYGLGNPKLFKEMGFELKTGEKIKRSGIIEKLVD 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY+R D+ ++ G FRV GD+++I P + +D+  RV MFG++I+ I E  P    K   +
Sbjct: 182 IQYERNDMELVPGRFRVKGDTLDIIPGYQDDI-VRVEMFGDEIDRIYELDPKNMTKKHEL 240

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           ++  +Y   H+V P      A+K I +EL   L  L     +L++ RL+Q+  YD+EM+E
Sbjct: 241 DSFYMYPAKHFVIPEEDKKNAIKSILKELDEWLPNL----DMLKSHRLKQKTLYDIEMIE 296

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            TGSC+ IENYSR+   R  GEP   L +Y PED L+ +DESH TIPQI GMY+GD  RK
Sbjct: 297 ETGSCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRK 356

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            +L +YGFRLPS  DNRPLRFEE+       I VSATPG +EL+     +VEQIIRPTGL
Sbjct: 357 QSLIDYGFRLPSAYDNRPLRFEEFKKYMNNVIFVSATPGEYELDNSNQ-VVEQIIRPTGL 415

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP VEI+    QVED+  E     ++G R+L+T LTKR+AE+LTEYL +R ++ RY+HS
Sbjct: 416 LDPEVEIKPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRQVKARYLHS 475

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ T+ER EIIR+LRLGKFD LVGINLLREGLDIPE G V ILDADKEGFLR+  SLIQT
Sbjct: 476 DIDTIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQT 535

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM---- 730
           IGRAARN NSKV+LYAD +T SI+ A+ ET RRR  Q ++N+ HNI P+++ + I     
Sbjct: 536 IGRAARNANSKVVLYADKMTDSIKKAVSETERRRNLQKDYNEMHNITPKTIVKPIREKVV 595

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
           ++ D   +  A   N+ I+ +       +                    FE+A +IRD I
Sbjct: 596 DISDIKHIPVADIPNVIIELEAEMYEAAEALE-----------------FEKAIKIRDNI 638

Query: 791 KRLKSSP 797
            +LK   
Sbjct: 639 AKLKKKL 645


>gi|296437049|gb|ADH19219.1| excinuclease ABC subunit B [Chlamydia trachomatis G/11222]
          Length = 668

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/666 (48%), Positives = 435/666 (65%), Gaps = 13/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   + P GDQP AI +L +GI      Q+LLG TGSGKTFTMA V   +  P +V+A
Sbjct: 10  FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVTANVNVPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 70  HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G    + +L S LV+  Y+  
Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R  FR  G  I+IF ++  D+A R+    + +  I    PLT        +I +Y
Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ R++  E  GR +E +RL QR T+D+EM++  G C+
Sbjct: 249 PGSHYVTPEAVREQAIRTIREELEQRMLFFE--GRPVEQERLFQRTTHDIEMIKEIGFCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PGEPP  L +Y P+D LL +DESH T+PQ+  MYRGD  RK +L EY
Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  E+++ +G I+EQIIRPTG+ DP  E
Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDPLPE 426

Query: 561 IRSARTQVEDVYDEINLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           IR A+ Q++D+ +EI    ++   +IL+  +TK++AED+  +L E  I   Y+HS ++T 
Sbjct: 427 IRPAKGQIDDLLEEIRQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAATYLHSGIETA 486

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +I+ DLRLG  DVL+G+NLLREG+D+PE  LVAILDADKEGFLRS  SLIQ  GRAA
Sbjct: 487 ERTQILTDLRLGNIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFCGRAA 546

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++ KVI YAD IT S+   + ET RRR+ QL++N++H I PQ + + I        L 
Sbjct: 547 RNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPI--------LA 598

Query: 740 DAATTNISIDAQQLSL-SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           +  T     +  +L + S K+ +A +K+  + M+ AA    F+EAA+ RD +   K    
Sbjct: 599 NPITKEAGQEETRLKMQSSKELEASIKTYEEAMYQAAQEFQFDEAAKYRDLMNAAKKQLL 658

Query: 799 FQGLDD 804
           FQ  ++
Sbjct: 659 FQKGEE 664


>gi|255348968|ref|ZP_05380975.1| excinuclease ABC subunit B [Chlamydia trachomatis 70]
 gi|255503507|ref|ZP_05381897.1| excinuclease ABC subunit B [Chlamydia trachomatis 70s]
 gi|255507185|ref|ZP_05382824.1| excinuclease ABC subunit B [Chlamydia trachomatis D(s)2923]
 gi|289525631|emb|CBJ15109.1| excinuclease ABC subunit B [Chlamydia trachomatis Sweden2]
 gi|296435193|gb|ADH17371.1| excinuclease ABC subunit B [Chlamydia trachomatis E/150]
 gi|296438912|gb|ADH21065.1| excinuclease ABC subunit B [Chlamydia trachomatis E/11023]
          Length = 668

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/666 (48%), Positives = 436/666 (65%), Gaps = 13/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   + P GDQP AI +L +GI      Q+LLG TGSGKTFTMA VI  +  P +V+A
Sbjct: 10  FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVIANVNVPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 70  HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G    + +L S LV+  Y+  
Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R  FR  G  I+IF ++  D+A R+    + +  I    PLT        +I +Y
Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ R++  E+  R +E +RL QR T+D+EM++  G C+
Sbjct: 249 PGSHYVTPEAIREQAIRTIREELEQRMLFFEE--RPVEQERLFQRTTHDIEMIKEIGFCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PGEPP  L +Y P+D LL +DESH T+PQ+  MYRGD  RK +L EY
Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  E+++ +G I+EQIIRPTG+ DP  E
Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDPLPE 426

Query: 561 IRSARTQVEDVYDEINLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           IR A+ Q++D+ +EI    ++   +IL+  +TK++AED+  +L E  I   Y+HS ++T 
Sbjct: 427 IRPAKGQIDDLLEEIRQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAAAYLHSGIETA 486

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +I+ DLRLG  DVL+G+NLLREG+D+PE  LVAILDADKEGFLRS  SLIQ  GRAA
Sbjct: 487 ERTQILTDLRLGNLDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFCGRAA 546

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++ KVI YAD IT S+   + ET RRR+ QL++N++H I PQ + + I        L 
Sbjct: 547 RNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPI--------LA 598

Query: 740 DAATTNISIDAQQLSL-SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           +  T     +  +L + S K+ +A +K+  + M+ AA    F+EAA+ RD +   K    
Sbjct: 599 NPITKEAGQEETRLKMQSSKELEASIKTYEEAMYQAAQEFQFDEAAKYRDLMNAAKKQLL 658

Query: 799 FQGLDD 804
           FQ  ++
Sbjct: 659 FQKGEE 664


>gi|308189817|ref|YP_003922748.1| UvrABC system protein B [Mycoplasma fermentans JER]
 gi|319777032|ref|YP_004136683.1| uvrabc system protein b [Mycoplasma fermentans M64]
 gi|238809815|dbj|BAH69605.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624559|gb|ADN68864.1| UvrABC system protein B [Mycoplasma fermentans JER]
 gi|318038107|gb|ADV34306.1| UvrABC system protein B [Mycoplasma fermentans M64]
          Length = 669

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/662 (44%), Positives = 430/662 (64%), Gaps = 3/662 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ + Y P+GDQP AI +L++ I    + Q+L GVTGSGKTFT+A VI+   RP +
Sbjct: 1   MSIFKLISPYKPAGDQPEAIKELVENIKDNMQHQVLKGVTGSGKTFTIANVIKEFDRPVL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LA+QLYSE K FFPHN VEY+VSY+DYY+PEAY+P +DTYI+K+S  N+ +D 
Sbjct: 61  VLSHNKTLASQLYSELKGFFPHNRVEYYVSYFDYYRPEAYIPSSDTYIDKQSQNNKDLDA 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SA  ++L RND I+V+SVS IYG  +   Y   +  +++G  ++++E    LV++ Y
Sbjct: 121 MRMSAMNAVLTRNDTIIVASVSAIYGALNPSEYYASVFPIEVGMQIKRQEFFKKLVQRNY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           KR  I +  GTF   GD++ I P+  ++   RV  FG++I+ I+   P+T + I      
Sbjct: 181 KRNQIDLELGTFSAKGDAVYIQPADSDEYQIRVDFFGDEIDSIATCDPITKEVIERFSHY 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+    Y   R  ++ A   I  EL  R+   +   +L+EAQR+++R+  D++ L   G
Sbjct: 241 TIFPGDAYTVDRSVIDEACDKILVELDERIKYFKANNQLIEAQRIQERVEKDVDSLREFG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI-PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
            C  IENY+RY+  R  GE P TL +Y   +  LLF+DESH+ IPQ++GMY GD+ RK  
Sbjct: 301 MCPGIENYARYMDRREAGERPYTLLDYFKGKKPLLFIDESHMMIPQLNGMYHGDYSRKKN 360

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLR-PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           L +YGFRLPS +DNRPL F+E+       T+ +SATP  +EL++  G++ +  +RPTGL+
Sbjct: 361 LVDYGFRLPSALDNRPLLFKEFENEFDFQTVYISATPDDYELDKTHGLLTKLFVRPTGLL 420

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +EIR ++ Q+ED+YDE+     +  R L+   TKR+AE+L+ Y  E+N ++ Y+HSE
Sbjct: 421 DPKIEIRLSKNQIEDIYDELQRQKDKNERTLILTTTKRLAEELSRYFLEKNEKIAYIHSE 480

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             T ER EI+R LR G +D ++GINLLREG+D+PE  L+ +LDADKEGF+RS  SLIQ  
Sbjct: 481 HNTFERNEILRKLRKGVYDTVIGINLLREGVDLPEVSLIMVLDADKEGFMRSTKSLIQIS 540

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN N +VI YAD  TKS+Q  I++   +R+ Q+ +NKKHNI P+++ + I E I  
Sbjct: 541 GRAARNANGRVIFYADKTTKSMQECIEDNEIKRKMQIAYNKKHNITPKTIIKPIAEPIHG 600

Query: 736 ILLEDAATTNISIDAQQLSLS-KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             +E         + +  + S KK  +  +K LR+QM+ AA  L++E A  +RD I  L+
Sbjct: 601 EGIEGEIEFFFKNEKRNQTQSGKKAKEELIKRLREQMNQAAKELDYERAIELRDIILELQ 660

Query: 795 SS 796
           + 
Sbjct: 661 AG 662


>gi|76789323|ref|YP_328409.1| excinuclease ABC subunit B [Chlamydia trachomatis A/HAR-13]
 gi|90110880|sp|Q3KLB1|UVRB_CHLTA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|76167853|gb|AAX50861.1| excinuclease ABC subunit B [Chlamydia trachomatis A/HAR-13]
          Length = 668

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/666 (48%), Positives = 435/666 (65%), Gaps = 13/666 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +   + P GDQP AI +L +GI      Q+LLG TGSGKTFTMA VI  +  P +V+A
Sbjct: 10  FVLHAPFLPCGDQPEAIRRLSQGITDGVPAQVLLGTTGSGKTFTMANVIANVNVPTLVLA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 70  HNKTLAAQLYQEFKAFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSS+SCIYGIGS ++YS M + L++G    + +L S LV+  Y+  
Sbjct: 130 SATRSILERRDTLIVSSISCIYGIGSPDNYSSMALTLEVGKEYPRSQLSSQLVRMHYQAS 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R  FR  G  I+IF ++  D+A R+    + +  I    PLT        +I +Y
Sbjct: 190 STP-QRSAFRERGSVIDIFLAYESDLAVRLEFMNDTLISIEYVDPLTMIPSHTTSSITLY 248

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ R++  E  GR +E +RL QR T+D+EM++  G C+
Sbjct: 249 PGSHYVTPEAVREQAIRTIREELEQRMLFFE--GRPVEQERLFQRTTHDIEMIKEIGFCK 306

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PGEPP  L +Y P+D LL +DESH T+PQ+  MYRGD  RK +L EY
Sbjct: 307 GIENYSRHFTGAAPGEPPTCLLDYFPDDFLLIIDESHQTLPQLRAMYRGDQSRKQSLVEY 366

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  E+++ +G I+EQIIRPTG+ DP  E
Sbjct: 367 GFRLPSAFDNRPLTYEEARRYFHRVIYVSATPGDLEIQESRGHIIEQIIRPTGIPDPLPE 426

Query: 561 IRSARTQVEDVYDEINLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           IR A+ Q++D+ +EI    ++   +IL+  +TK++AED+  +L E  I   Y+HS ++T 
Sbjct: 427 IRPAKGQIDDLLEEIRQRLRKDQEKILVISVTKKLAEDIAAFLAELGIAATYLHSGIETA 486

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +I+ DLRLG  DVL+G+NLLREG+D+PE  LVAILDADKEGFLRS  SLIQ  GRAA
Sbjct: 487 ERTQILTDLRLGNIDVLIGVNLLREGIDLPEVSLVAILDADKEGFLRSSASLIQFCGRAA 546

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN++ KVI YAD IT S+   + ET RRR+ QL++N++H I PQ + + I        L 
Sbjct: 547 RNIHGKVICYADRITPSMDHMLKETERRRKIQLDYNQQHKITPQPIIKPI--------LA 598

Query: 740 DAATTNISIDAQQLSL-SKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           +  T     +  +L + S K+ +A +K+  + M+ AA    F+EA + RD +   K    
Sbjct: 599 NPITKEAGQEETRLKMQSSKELEASIKTYEEAMYQAAQEFQFDEAVKYRDLMNAAKKQLL 658

Query: 799 FQGLDD 804
           FQ  ++
Sbjct: 659 FQKGEE 664


>gi|15618710|ref|NP_224996.1| excinuclease ABC subunit B [Chlamydophila pneumoniae CWL029]
 gi|15836334|ref|NP_300858.1| excinuclease ABC subunit B [Chlamydophila pneumoniae J138]
 gi|16752239|ref|NP_445607.1| excinuclease ABC subunit B [Chlamydophila pneumoniae AR39]
 gi|33242161|ref|NP_877102.1| excinuclease ABC subunit B [Chlamydophila pneumoniae TW-183]
 gi|6831709|sp|Q9Z7A5|UVRB_CHLPN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|4377112|gb|AAD18939.1| Exinuclease ABC Subunit B [Chlamydophila pneumoniae CWL029]
 gi|7189983|gb|AAF38842.1| excinuclease ABC, subunit B [Chlamydophila pneumoniae AR39]
 gi|8979175|dbj|BAA99009.1| exinuclease ABC subunit B [Chlamydophila pneumoniae J138]
 gi|33236672|gb|AAP98759.1| excinuclease ABC chain B [Chlamydophila pneumoniae TW-183]
          Length = 657

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/660 (48%), Positives = 431/660 (65%), Gaps = 8/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   + P GDQP AIA+L  G+ ++ K Q+LLG TGSGKTFT+A V+  +  P +V+A
Sbjct: 3   FQLHAPFAPCGDQPEAIARLSAGVRNQVKSQVLLGTTGSGKTFTIANVVANVNLPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+ FFP+NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 63  HNKTLAAQLYQEFREFFPNNAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSSVSCIYGIGS E+Y+ M + L++G    +  L + LVK  Y+  
Sbjct: 123 SATRSILERRDTLIVSSVSCIYGIGSPENYTSMALVLEVGKEYPRNILTAQLVKMHYQAS 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            I   R  FR  G  I+IFP++  ++A R+    + +  I    PLT     +V +  +Y
Sbjct: 183 PIP-QRSAFRERGSVIDIFPAYESELALRLEFLNDTLTSIEYSDPLTMIPKESVPSATLY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P      A++ I+EEL+ R+   +   R +E  R+  R T+D+EM++  G C+
Sbjct: 242 PGSHYVIPEAIREQAIRTIQEELEERMAFFDD--RPIEKDRIFHRTTHDIEMIKEIGFCK 299

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PG PP  L +Y PED LL +DESH T+PQI  MYRGD  RK +L EY
Sbjct: 300 GIENYSRHFTGAPPGAPPTCLLDYFPEDFLLIIDESHQTLPQIRAMYRGDQSRKQSLVEY 359

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  E+++  G IV+QIIRPTG+ DP  E
Sbjct: 360 GFRLPSAFDNRPLTYEEAQKYFRKVIYVSATPGDTEVQESSGHIVQQIIRPTGIPDPMPE 419

Query: 561 IRSARTQVEDVYDEINLA-AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           IR A  QV+D+ +EI L  +Q+  +IL+  +TK++AED+  +L E  I   Y+HS ++T 
Sbjct: 420 IRPATGQVDDLLEEIRLRLSQKHEKILVISITKKLAEDMAGFLSELEIPAAYLHSGIETA 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +I+ DLR G  DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS +SLIQ  GRAA
Sbjct: 480 ERTQILTDLRSGVIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAA 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N KVI YAD  T+SI+  + ET RRR+ QL++NK+HNI P+ + + I        + 
Sbjct: 540 RNINGKVIFYADQKTRSIEETLRETERRRQIQLDYNKEHNIVPKPIIKAIF----ANPIL 595

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
             +  + S    Q  LSK+  +  +K     M  AA    F EAA+ RD ++  K    +
Sbjct: 596 QTSKDSESPKESQRPLSKEDLEEQIKKYEALMQRAAKEFRFNEAAKYRDAMQACKEQLLY 655


>gi|269302592|gb|ACZ32692.1| excinuclease ABC, B subunit [Chlamydophila pneumoniae LPCoLN]
          Length = 657

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/660 (48%), Positives = 431/660 (65%), Gaps = 8/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+   + P GDQP AIA+L  G+ ++ K Q+LLG TGSGKTFT+A V+  +  P +V+A
Sbjct: 3   FQLHAPFAPCGDQPEAIARLSAGVRNQVKSQVLLGTTGSGKTFTIANVVANVNLPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+ FFP+NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 63  HNKTLAAQLYQEFREFFPNNAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSSVSCIYGIGS E+Y+ M + L++G    +  L + LVK  Y+  
Sbjct: 123 SATRSILERRDTLIVSSVSCIYGIGSPENYTSMALVLEVGKEYPRNILTAQLVKMHYQAS 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            I   R  FR  G  I+IFP++  ++A R+    + +  I    PLT     +V +  +Y
Sbjct: 183 PIP-QRSAFRERGSVIDIFPAYESELALRLEFLNDTLTSIEYSDPLTMIPKESVSSATLY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYV P      A++ I+EEL+ R+   +   R +E  R+  R T+D+EM++  G C+
Sbjct: 242 PGSHYVIPEAIREQAIRTIQEELEERMAFFDD--RPIEKDRIFHRTTHDIEMIKEIGFCK 299

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PG PP  L +Y PED LL +DESH T+PQI  MYRGD  RK +L EY
Sbjct: 300 GIENYSRHFTGAPPGAPPTCLLDYFPEDFLLVIDESHQTLPQIRAMYRGDQSRKQSLVEY 359

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  E+++  G IV+QIIRPTG+ DP  E
Sbjct: 360 GFRLPSAFDNRPLTYEEAQKYFRKVIYVSATPGDTEVQESSGHIVQQIIRPTGIPDPMPE 419

Query: 561 IRSARTQVEDVYDEINLA-AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           IR A  QV+D+ +EI L  +Q+  +IL+  +TK++AED+  +L E  I   Y+HS ++T 
Sbjct: 420 IRPATGQVDDLLEEIRLRLSQKHEKILVISITKKLAEDMAGFLSELEIPAAYLHSGIETA 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +I+ DLR G  DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS +SLIQ  GRAA
Sbjct: 480 ERTQILTDLRSGVIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAA 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N KVI YAD  T+SI+  + ET RRR+ QL++NK+HNI P+ + + I        + 
Sbjct: 540 RNINGKVIFYADQKTRSIEETLRETERRRQIQLDYNKEHNIVPKPIIKAIF----ANPIL 595

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
             +  + S    Q  LSK+  +  +K     M  AA    F EAA+ RD ++  K    +
Sbjct: 596 QTSKDSESPKESQRPLSKEDLEEQIKKYEALMQRAAKEFRFNEAAKYRDAMQACKEQLLY 655


>gi|328915140|gb|AEB55973.1| excinuclease ABC, B subunit [Chlamydophila psittaci 6BC]
          Length = 661

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/660 (49%), Positives = 430/660 (65%), Gaps = 9/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P GDQP AIA+L +G+ +    Q+LLG TGSGKTFT+A V+  + RP +V+A
Sbjct: 8   FELRAAFSPCGDQPEAIAKLTQGVRNHTPSQVLLGTTGSGKTFTIANVVANVNRPTLVLA 67

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYF+SYYDYYQPEAY+ R DTYIEK   IN +ID++R 
Sbjct: 68  HNKTLAAQLYQEFKEFFPNNAVEYFISYYDYYQPEAYIARNDTYIEKSLLINSEIDKLRL 127

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSSVSCIYGIGS E+Y+ M ++LK+G    +  L S LVK  Y+  
Sbjct: 128 SATRSILERRDTLIVSSVSCIYGIGSPENYTSMALELKVGREYPRAILASQLVKMNYQ-A 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R TFR  G  I+IFP++  D+A R+    + +  I    PLT   + +V +I +Y
Sbjct: 187 SSVAQRSTFRERGSVIDIFPAYESDLAIRLEFSNDTLSSIEYSDPLTMIPMESVTSIILY 246

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ RL   +   R +E  RL  R T+D+EM++ TG C+
Sbjct: 247 PGSHYVTPEAVREQAIRSIREELEERLAFFQD--RPIEQDRLFHRTTHDIEMIKETGFCK 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ T   PG PP  L +Y P++ LL +DESH T+PQI  MYRGD  RK +L EY
Sbjct: 305 GIENYSRHFTKSPPGAPPACLLDYFPDNFLLVIDESHQTLPQIRAMYRGDRSRKESLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  EL + QG IVEQIIRPTG+ DP  E
Sbjct: 365 GFRLPSAYDNRPLTYEEARKYFHNVIYVSATPGETELNESQGHIVEQIIRPTGIPDPIPE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           IR A  QV+D+ +EI     +   +IL+  +TK++AED+  +L E +I   Y+HS ++T 
Sbjct: 425 IRPATGQVDDLLEEIRKHLSKSQAKILVISITKKLAEDIAAFLSELDIAAAYLHSGIETA 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  I+ DLRLG  DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS +SLIQ  GRAA
Sbjct: 485 ERTRILSDLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+ KVI YAD  T SI+  + ET RRR+ QLE+NK + I P+ + + I     P    
Sbjct: 545 RNVDGKVIFYADHKTLSIEQTLKETERRRQIQLEYNKANKITPKPIIKAIFANPIP---- 600

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
                    D  Q  LS ++ +  +K     M  AA+   F+EAA+ RD++K  K    +
Sbjct: 601 -QGGKKEVQDTPQQPLSTQELEKLIKKYENLMQQAANAFRFDEAAKYRDKMKAAKEQLLY 659


>gi|313158966|gb|EFR58343.1| excinuclease ABC, B subunit [Alistipes sp. HGB5]
          Length = 691

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/670 (47%), Positives = 437/670 (65%), Gaps = 15/670 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P GDQP AI QL+  I    K   LLGVTGSGKTFT+A V+  + RP +V++
Sbjct: 3   FKLVSDYAPMGDQPEAIEQLVGSIRHGSKHNTLLGVTGSGKTFTVANVVAQLNRPTLVLS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+NFFP NAVEYFVSYYDYYQPEAY+P TDTYIEK+ SIN +I+++R 
Sbjct: 63  HNKTLAAQLYGEFRNFFPENAVEYFVSYYDYYQPEAYLPSTDTYIEKDLSINAEIEKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
               +LL  R D IVVSSVSC+YG G+   +    + +K+G  V  K  L  LV+  Y R
Sbjct: 123 RTVATLLSGRRDVIVVSSVSCLYGAGNPADFHATAIDIKVGQIVSYKHFLYKLVEALYTR 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLE--DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            +  +   TFRV GD+++I  +  E     +RV  + N+IE I    P+TGQ+I +++ +
Sbjct: 183 TERELEPATFRVNGDTVDIMAAFGEFGSQCFRVMFYDNEIEAIQTIDPVTGQRIHSLDNL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +Y  S +VT +  +N A++ I  +L  ++   E+ GR +EAQR++QR+ YD+EM++  G
Sbjct: 243 TLYPTSLFVTTKERINGAVQQIYLDLGRQIEFFERAGRPMEAQRIKQRVEYDIEMIKELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR+ G  P  L +Y P+D LL VDESHVTIPQ+  M+ GD  RK  L
Sbjct: 303 YCPGIENYSRYFDGRSEGTRPFCLIDYFPKDYLLVVDESHVTIPQVHAMFGGDRARKENL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLP+  DNRP+ F E+  L+ T+I VSATP  +EL + +G+IVEQ+IRPTGLVDP
Sbjct: 363 VEYGFRLPAAKDNRPVTFAEFEQLQGTSIYVSATPADYELMKSEGVIVEQLIRPTGLVDP 422

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           P+E+R    Q++D+ +EI+   +   ++L+T +TKRMAE+L++Y     +R RY+HS+V 
Sbjct: 423 PLEVRVTMNQIDDLLEEIDKRVKNDDKVLVTTITKRMAEELSKYFDRVGVRNRYIHSDVD 482

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           TLERI+I+ DLR G FDVLVG+NLLREGLD+PE  LVAILDADKEGFLR+  SL Q  GR
Sbjct: 483 TLERIQILEDLRAGMFDVLVGVNLLREGLDLPEVALVAILDADKEGFLRNVRSLTQIAGR 542

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME------ 731
           AAR+    VILYADT T S++ AI+++ RRREKQ+ +N +H + P+  +           
Sbjct: 543 AARHSQGNVILYADTCTDSMRYAIEQSNRRREKQVRYNMEHGMLPRRAQRSGSGQSTLLT 602

Query: 732 ------VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
                  I  +          + D Q+   + +   A +   R+ M  AA +L+F  AA+
Sbjct: 603 TRTDVPEIAAVYPIAEDHYMAAADVQKTYAASENLDALIVKAREDMERAAKSLDFLAAAK 662

Query: 786 IRDEIKRLKS 795
            RD +  L+ 
Sbjct: 663 FRDRMYELQK 672


>gi|163784875|ref|ZP_02179647.1| excinuclease ABC subunit B [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879856|gb|EDP73588.1| excinuclease ABC subunit B [Hydrogenivirga sp. 128-5-R1-1]
          Length = 595

 Score =  723 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/584 (53%), Positives = 418/584 (71%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F+++  + P+GDQP AI QL + +    K Q+LLG TG+GKT T  K IE   +PA+V
Sbjct: 2   TPFKIKLPFKPAGDQPKAIKQLYQNLKDGVKEQVLLGATGTGKTITFGKTIEKYGKPALV 61

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +  NK LAAQ+Y E K  FP NAVEYFVSYYDYYQPEAY+P  D YIEK+SSIN+ IDR+
Sbjct: 62  LTHNKTLAAQIYRELKEIFPDNAVEYFVSYYDYYQPEAYLPEKDVYIEKDSSINDAIDRL 121

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           RHSAT+SL+ER D IVV+SVSCIYG+G+ E Y ++ +QL +G  ++++ELL  L++ QY+
Sbjct: 122 RHSATKSLIERPDTIVVASVSCIYGLGTPEFYEKLRLQLYVGMPIDRQELLRRLIELQYQ 181

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTF V GD++E+  SH ED   R+  FG++IE I+E         R ++   
Sbjct: 182 RDDYSFKRGTFSVKGDTVEVLASHTEDTILRIEFFGDEIEAITELDLFNRNVKRKLDRTV 241

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  SHYV P+P +  A++ I+ +L+  + E  K G+ +EA RL QR  YD+EM+   G+
Sbjct: 242 IFPASHYVIPKPDIAEAVRQIQIDLEKEVEEFRKLGKEIEANRLWQRTNYDIEMILELGT 301

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSRY  GR PGE P TL +Y P+D LL +DESHVTIPQI  MY GD  RK  L 
Sbjct: 302 CKGIENYSRYFDGRKPGEAPYTLLDYFPDDYLLIIDESHVTIPQIRAMYNGDRKRKENLV 361

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YG+R+ S  DNRPL+FEE+       I VSATP  WE+E+ +GIIVEQIIRPTGL+DP 
Sbjct: 362 KYGWRMKSAFDNRPLKFEEFLQKIERAIYVSATPSDWEIERSKGIIVEQIIRPTGLLDPE 421

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V ++    Q++D+  EI    ++  R ++  LTK+MAE+L++YL ER+I+  Y+HSE+ T
Sbjct: 422 VVVKPTEGQIDDLISEIWNIKERNERAIVITLTKKMAENLSDYLQERDIKAVYLHSEIDT 481

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER +II++LR G +DV+VG+NLLREG+D+PE  LVAILDADK+GFLRS T+LIQ IGRA
Sbjct: 482 IERAKIIKELREGIYDVVVGVNLLREGIDMPEVSLVAILDADKQGFLRSTTALIQIIGRA 541

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
           ARNVN + ILYAD IT +++ AI+ET RRR+ Q E+NKKH I P
Sbjct: 542 ARNVNGRAILYADKITPAMEKAIEETNRRRKLQEEYNKKHGITP 585


>gi|240047166|ref|YP_002960554.1| excinuclease ABC subunit B [Mycoplasma conjunctivae HRC/581]
 gi|239984738|emb|CAT04712.1| UvrABC system protein B [Mycoplasma conjunctivae]
          Length = 654

 Score =  723 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/659 (44%), Positives = 431/659 (65%), Gaps = 6/659 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ + Y PSGDQP AI+ L+ GI + ++ Q+LLGVTGSGKTFTMA VI  + RP +V+
Sbjct: 1   MFKLVSKYAPSGDQPKAISSLVNGIKNNKENQVLLGVTGSGKTFTMANVISQINRPVLVL 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK LA+QLYSEFK FFP N VEYFVS +D+Y+PEAY+P  D Y++K S  N  ++ MR
Sbjct: 61  SHNKTLASQLYSEFKEFFPENRVEYFVSNFDFYRPEAYLPGKDIYVDKTSKTNMDLEAMR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA  +L  RND IVVSSV+ IYG  +   Y +  + ++    ++ + L  +LVK  Y+R
Sbjct: 121 MSALNALSMRNDTIVVSSVAAIYGALNPTEYKEGFLNIEANQKIKIQNLAINLVKIGYQR 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +I +  G F + GD +E+ P+  +    R+S FG+ IE I   +P+  +  R+     I
Sbjct: 181 NNIDLKPGNFSIKGDILELAPAWDDSFNIRISFFGDLIESIDTIHPIEKKLFRSFHAYTI 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  S Y   R T+  A+K I+ EL+ RL   E EG+L+E QRLE+R+  D++ L   G C
Sbjct: 241 YPASAYTVKRDTITQAIKTIEIELEYRLKYFENEGKLVEKQRLEERVNNDIDSLREFGFC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENY+R++ GR  GE P TL +Y+P+D+L+F+DESH+ +PQ++GMY GD  RK  L +
Sbjct: 301 SGIENYARHIDGRQEGEKPYTLLDYLPKDALIFIDESHIMVPQLNGMYEGDRSRKTNLVD 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+F+E+       I VSATPG +EL+   G ++ QIIRPTGL+DP +
Sbjct: 361 YGFRLPSALDNRPLKFKEFEKYEQQKIFVSATPGQYELDLVDGEVIPQIIRPTGLLDPII 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY-ERNIRVRYMHSEVKT 618
           E+     Q+E +Y+ +     +  R L+   TKR++E++++YL  E+  +V Y+HS+  T
Sbjct: 421 EVVDKTNQMEKIYNYLQQQKAKDERSLILTTTKRLSEEISKYLQEEKKQKVYYIHSDFTT 480

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER EI+  LR G +D ++GINLLREG+D+PE  L+ +LDAD E F RS++SLIQ  GRA
Sbjct: 481 FERDEILIKLRKGVYDAVIGINLLREGVDLPEVSLILVLDADHESFFRSRSSLIQIAGRA 540

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           ARN + KVI +AD I++S++  I++   +RE Q+++N ++NI P+++ + I + ++P   
Sbjct: 541 ARNDHGKVIFFADKISRSMKEVIEDNKNKREIQIKYNIENNITPKTIIKPIPQRLNP--- 597

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
                 +IS   ++   +KK+ K+H++ LR +M  AA N NFE A  IRD I  L+   
Sbjct: 598 --KTEMSISRIIKKDKGNKKEIKSHIEDLRNEMKKAAANHNFELAIEIRDLIAELEQKI 654


>gi|187736045|ref|YP_001878157.1| excinuclease ABC, B subunit [Akkermansia muciniphila ATCC BAA-835]
 gi|187426097|gb|ACD05376.1| excinuclease ABC, B subunit [Akkermansia muciniphila ATCC BAA-835]
          Length = 715

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/714 (42%), Positives = 435/714 (60%), Gaps = 60/714 (8%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ F++ + + PSGDQ  AI +LLK + +  K Q LLGVTGSGKTFTMA +I  M RP +
Sbjct: 1   MSSFELNSSFKPSGDQEQAIGKLLKSLEAGNKHQGLLGVTGSGKTFTMANLIARMNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQL+SE K+FFP+NAV+Y+VSY+DYYQPEAY+  +DTYIEK+S+IN+++DR
Sbjct: 61  VISHNKTLAAQLHSELKSFFPNNAVDYYVSYFDYYQPEAYIASSDTYIEKDSAINDELDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +  +A  SL+ R D IVV+SVSCIYG+ + E Y  + ++++ GD +++   L  LV++ +
Sbjct: 121 LSLNAMNSLMTRRDVIVVASVSCIYGLSTPEDYRNLTLRMREGDVMDRDVFLKHLVERLF 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +RQD    RGTFRV G+ +E+FP++ E  A RV  FG+++E +S     TG+    + + 
Sbjct: 181 ERQDFDFTRGTFRVRGEVVEVFPAYSEGEAIRVEFFGDEVERVSLIDSATGRVRERLGSY 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
             +    YV        A+K I+EEL+ R+   EK GRLLEAQRL+ R  YDLE++E  G
Sbjct: 241 TFFPAKQYVAAPEKRAAALKAIREELEDRVGWFEKHGRLLEAQRLKLRTDYDLELIEELG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYSR+L+GR PG  P TL ++ P+DSL  +DESHV +PQ+ GMY GD  RK  L
Sbjct: 301 FCKGIENYSRHLSGRLPGSAPSTLLDFFPKDSLTLIDESHVAVPQLGGMYEGDRSRKNIL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII------------- 544
            E+GFRLPS +DNRPL+F E+   +   +  SATPG +EL  C+                
Sbjct: 361 VEHGFRLPSALDNRPLKFHEFMERQNQIVYASATPGPFELVNCRADNKTYIPVRRAARSG 420

Query: 545 ----------------------------VEQIIRPTGLVDPPVE--------------IR 562
                                       VE+           VE              IR
Sbjct: 421 EKAPEGFKGILFTSPKDIRVAPSPSTEPVEKFDPTRRSTPLIVEQIIRPTGLLEPKITIR 480

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
             + Q+++     N    +  R+L+T LTK+ AEDLTEYL    ++V Y+H++V  +ER+
Sbjct: 481 PLKGQIDETIAMCNERVAKNERVLVTTLTKKTAEDLTEYLKGVGLKVSYIHADVDAIERV 540

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EI+R LR  K DVLVGINLLREGLD+PE  LV ILDADKEGFLR++TSL+QT GRAAR++
Sbjct: 541 EILRALRARKIDVLVGINLLREGLDLPEVSLVCILDADKEGFLRNETSLVQTAGRAARHL 600

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           N + +L+AD +T SI+  ++ T  RR  Q ++N++H I PQ+V       +     +D  
Sbjct: 601 NGECVLFADVMTDSIKRLVELTDYRRGIQEKYNREHGIVPQTVSRSEQGQLKLYAEDDEE 660

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +  ++ D     L     +  +  L  +M  AA +L FE AA IRDEI++++  
Sbjct: 661 SFRVAEDEAGYGL-----EERIARLETEMKEAASHLEFERAALIRDEIRQMRGE 709


>gi|329943301|ref|ZP_08292075.1| excinuclease ABC, B subunit [Chlamydophila psittaci Cal10]
 gi|332287878|ref|YP_004422779.1| excinuclease ABC subunit B [Chlamydophila psittaci 6BC]
 gi|313848450|emb|CBY17454.1| UvrABC system protein B UvrB [Chlamydophila psittaci RD1]
 gi|325506601|gb|ADZ18239.1| excinuclease ABC subunit B [Chlamydophila psittaci 6BC]
 gi|328814848|gb|EGF84838.1| excinuclease ABC, B subunit [Chlamydophila psittaci Cal10]
          Length = 656

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/660 (49%), Positives = 431/660 (65%), Gaps = 9/660 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+++  + P GDQP AIA+L +G+ +    Q+LLG TGSGKTFT+A V+  + RP +V+A
Sbjct: 3   FELRAAFSPCGDQPEAIAKLTQGVRNHTPSQVLLGTTGSGKTFTIANVVANVNRPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYF+SYYDYYQPEAY+ R DTYIEK   IN +ID++R 
Sbjct: 63  HNKTLAAQLYQEFKEFFPNNAVEYFISYYDYYQPEAYIARNDTYIEKSLLINSEIDKLRL 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSSVSCIYGIGS E+Y+ M ++LK+G    +  L S LVK  Y+  
Sbjct: 123 SATRSILERRDTLIVSSVSCIYGIGSPENYTSMALELKVGREYPRAILASQLVKMNYQ-A 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                R TFR  G  I+IFP++  D+A R+    + +  I    PLT   + +V +I +Y
Sbjct: 182 SSVAQRSTFRERGSVIDIFPAYESDLAIRLEFSNDTLSSIEYSDPLTMIPMESVTSIILY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ RL   +   R +E  RL  R T+D+EM++ TG C+
Sbjct: 242 PGSHYVTPEAVREQAIRSIREELEERLAFFQD--RPIEQDRLFHRTTHDIEMIKETGFCK 299

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ T   PG PP  L +Y P++ LL +DESH T+PQI  MYRGD  RK +L EY
Sbjct: 300 GIENYSRHFTKSPPGAPPACLLDYFPDNFLLVIDESHQTLPQIRAMYRGDRSRKESLVEY 359

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  EL + QG IVEQIIRPTG+ DP  E
Sbjct: 360 GFRLPSAYDNRPLTYEEARKYFHNVIYVSATPGETELNESQGHIVEQIIRPTGIPDPIPE 419

Query: 561 IRSARTQVEDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           IR A  QV+D+ +EI     +   +IL+  +TK++AED+  +L E +I   Y+HS ++T 
Sbjct: 420 IRPATGQVDDLLEEIRKHLSKSQAKILVISITKKLAEDIAAFLSELDIAAAYLHSGIETA 479

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  I+ DLRLG  DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS +SLIQ  GRAA
Sbjct: 480 ERTRILSDLRLGNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAA 539

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+ KVI YAD  T SI+  + ET RRR+ QLE+NK + I P+ + + I     P   +
Sbjct: 540 RNVDGKVIFYADHKTLSIEQTLKETERRRQIQLEYNKANKITPKPIIKAIFANPIPQGGK 599

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
                    D  Q  LS ++ +  +K     M  AA+   F+EAA+ RD++K  K    +
Sbjct: 600 KEVQ-----DTPQQPLSTQELEKLIKKYENLMQQAANAFRFDEAAKYRDKMKAAKEQLLY 654


>gi|15828567|ref|NP_325927.1| excinuclease ABC subunit B [Mycoplasma pulmonis UAB CTIP]
 gi|14548015|sp|P58174|UVRB_MYCPU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|14089509|emb|CAC13269.1| EXCINUCLEASE ABC SUBUNIT B [Mycoplasma pulmonis]
          Length = 657

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/654 (45%), Positives = 428/654 (65%), Gaps = 1/654 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ ++Y PSGDQP AI +L + I   +K  +L GVTGSGKTFT+A +I    R  +V+
Sbjct: 1   MFKLHSNYSPSGDQPRAIQELAEDIEKNKKHLVLQGVTGSGKTFTIANLIAKFNRTTLVL 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           + NK LA+QLYSE K FFP N VEYFVSY+D+Y+PEAY+P TDTYI+K S  N ++D MR
Sbjct: 61  SHNKTLASQLYSELKEFFPENRVEYFVSYFDFYRPEAYLPSTDTYIDKTSKTNNELDAMR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            S+  +LL R D IVVSSV+ IYG  + + Y +    +++G  +++K+    LVK+ YKR
Sbjct: 121 MSSLNALLTRKDTIVVSSVAAIYGAFNPQEYQKNFFSIEVGQELKRKDFFLDLVKRHYKR 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D+ ++ G+F   GD +EI P+   D A RV  FG++IE I+   PL     +  +   I
Sbjct: 181 NDVNLVPGSFSAKGDVVEIAPAWTSDFAIRVEFFGDEIEAIATIDPLNKTLKKRHKNYLI 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  + Y T +  ++  +  +KEEL  RL   EK  +LLE QRLEQR+  D++ LE  G C
Sbjct: 241 FPANAYSTNKDIVSRVVLQVKEELIDRLDYFEKNNKLLEMQRLEQRVKSDMDSLEEFGIC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENY+RY+ GR  GE P TL +Y+PE++L+F+DESH+ +PQ++ M+ GD  RK  L +
Sbjct: 301 SGIENYARYIDGREQGEKPYTLLDYLPEEALVFIDESHMMVPQLNAMFNGDRSRKQNLVD 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL F E+   +   I +SATP  +E+E+    I + IIRPTGL+DP +
Sbjct: 361 YGFRLPSALDNRPLTFSEFEEYKFPKIYISATPSEYEIEKADQKITKMIIRPTGLLDPII 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E RS   QVED+YDE+     +  R L+   TKR +E+LT Y  E+  +V Y+HS+ KT 
Sbjct: 421 ETRSKTNQVEDIYDELQKQKAKNERTLILTTTKRFSEELTRYFQEKGEKVAYIHSDHKTF 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EI+R LR G +D+++GINLLREG+D+PE  LV ILDADKE FLR+  SLIQ +GRA+
Sbjct: 481 ERNEILRKLRKGVYDLVIGINLLREGIDLPEVSLVIILDADKESFLRNTKSLIQIVGRAS 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN + KVI YAD ++KS++  I++   +R+ Q+++NK+H I PQ++ + I E I+    E
Sbjct: 541 RNSSGKVIFYADFVSKSMRETIEDNFEKRQIQIQYNKEHGIVPQTIIKDIPEPIEGHGFE 600

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
            +    +S + +  +   K+ +  +  L+KQM  A+  +N+E A  +RD +  L
Sbjct: 601 HSIEYFLSNEKKSKAQ-LKEKEKLILDLKKQMLEASQKMNYERAIHLRDLLIEL 653


>gi|26554342|ref|NP_758276.1| excinuclease ABC subunit B [Mycoplasma penetrans HF-2]
 gi|81846183|sp|Q8EUN2|UVRB_MYCPE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|26454352|dbj|BAC44680.1| excinuclease ABC subunit B [Mycoplasma penetrans HF-2]
          Length = 662

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/659 (47%), Positives = 432/659 (65%), Gaps = 6/659 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           T F +++ + PSGDQP AI +++KG    + K Q+L+G TG+GKTFTMA +I+++    +
Sbjct: 7   TVFDLKSKFKPSGDQPQAIEKIVKGFKEDKFKSQVLVGATGTGKTFTMANIIQSLNCKTL 66

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQLYSEFK  FP N VEYFVS +D+YQPEA++P+T+TYIEK S  N  I+ 
Sbjct: 67  VLAHNKTLAAQLYSEFKEMFPDNKVEYFVSAFDFYQPEAFLPKTNTYIEKNSQSNNDIEM 126

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +  SA  SL+ER+D IVV+SV+ IY     + + +  V  K    +  K++   LV   Y
Sbjct: 127 LNLSALNSLIERDDVIVVASVAAIYASSPPDDFFKNRVAYKKNQVIPIKQVQYELVNLNY 186

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+ +  G F V GD +EI P   ++  +R+S FG++IEEI++  PLT Q I  ++ I
Sbjct: 187 QRNDVDVTHGRFSVKGDLMEIGPGFTDEFNYRISFFGDEIEEIAKIDPLTKQVITKLDEI 246

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +     Y+  R TL  ++K IK+EL        K+ +L+EAQR+ +R  +D+E  +  G
Sbjct: 247 VLPGAEVYLANRDTLEESLKRIKDELTETHKNFLKQNKLIEAQRILERTNHDIESFKEFG 306

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSR+L  R  G+ P T+F+Y  +D LL VDESH+ +PQI GMY  D  RK TL
Sbjct: 307 FCPGIENYSRHLELRAQGQTPYTIFDYFDKDWLLIVDESHMMVPQIRGMYNTDRSRKETL 366

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            EYGFRLPS +DNRPL F E+       + VSATP  WE+E+ Q I  EQIIRPTGLVDP
Sbjct: 367 VEYGFRLPSALDNRPLNFNEFLSKTDKKLYVSATPNEWEIEESQQIT-EQIIRPTGLVDP 425

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EIR  + Q+ D+  E+        R  +TV+T R+AE+LTEYL  +NI+V Y+H+E+K
Sbjct: 426 IIEIRPTQDQILDIEQELRKQIANKERTFITVMTIRLAEELTEYLRNKNIKVAYLHNELK 485

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T+ER +I+ +LR G +DV++GINLLREGLD+PE   V ILDADK GF RS  SLIQ IGR
Sbjct: 486 TIERFKILNNLRKGIYDVVIGINLLREGLDVPEVSKVLILDADKPGFFRSDKSLIQIIGR 545

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           A+RNVN KVI+YADTIT+++  AI ET RRR  Q+E NKKHNI P++V + I       L
Sbjct: 546 ASRNVNGKVIMYADTITEAMDKAIKETERRRNIQIEFNKKHNITPKTVIKPIA----LDL 601

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            ++ A  NI     +   SK+K    +K LR++M  AA N  +E AA IRD I  L+++
Sbjct: 602 SKNDADINIDELISKNKKSKEKIDRTVKKLREEMLAAAKNQEYERAAYIRDIIMELEAN 660


>gi|90578521|ref|ZP_01234332.1| excinuclease ABC subunit B [Vibrio angustum S14]
 gi|90441607|gb|EAS66787.1| excinuclease ABC subunit B [Vibrio angustum S14]
          Length = 656

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/622 (51%), Positives = 434/622 (69%), Gaps = 2/622 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP A+A+L+  I      Q L GVTGSGKTFTMA +I  +QRP +++A
Sbjct: 6   FILHSAYPPSGDQPEALARLIGNIQDGVTHQTLQGVTGSGKTFTMANMIHRLQRPTLILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K FFP NAVEYFVSYYDYYQPE Y+P +D +I K+S++N+Q++R+R 
Sbjct: 66  HNKTLAAQLYSEMKRFFPENAVEYFVSYYDYYQPEVYIPGSDRFIRKDSAVNQQLERLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+SL+ER D IVV+SVS IYG+G    Y  + + L +G ++++++ +  LV  QY R 
Sbjct: 126 STTKSLIERKDVIVVASVSAIYGLGDPAQYRAVQIPLSVGMTIDREDFIQRLVALQYSRC 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  I R TFRV G+  +I+P+  E  A RV MF + IE++  F P+TG+ + +++   + 
Sbjct: 186 ERTIERATFRVHGEIFDIYPADSESKAIRVVMFDDTIEQLQWFDPITGKVLGDIDHYFVS 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y   +  L  A   I++EL+MR+ EL  E R++EA RL +R T+D+EM++  G C 
Sbjct: 246 PKTLYAASKDKLMKASIEIQKELEMRVTELNNENRIVEAARLYERTTHDIEMMQQLGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS YL  R+P  PP TL +Y+PED LLF+DESHV IPQIS MYR D  RK TL +Y
Sbjct: 306 GLENYSCYLNDRDPTLPPTTLLDYLPEDGLLFIDESHVMIPQISAMYRSDVSRKETLIDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPL F+E+  ++P T+ VSATPG +EL++ Q  + EQIIRPTGL+DP VE
Sbjct: 366 GFRLPSAKNNRPLMFKEFEQIKPQTVFVSATPGEYELKKSQQHVTEQIIRPTGLLDPIVE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQ +D+  EI+   Q+  R+L+T LTK+ AE L E + E+ I+V Y+HSEVKT +
Sbjct: 426 VRPLATQTDDLLKEISERTQKDERVLVTTLTKKSAEALYELMVEQGIKVSYIHSEVKTEQ 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR GKFDVL+GINLLREGLDIPE  LVA+L AD  GFLRS  +LIQ IGRAAR
Sbjct: 486 RVEIIDDLRAGKFDVLIGINLLREGLDIPEASLVAVLHADHAGFLRSTLALIQIIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N N K ILYAD IT ++Q A+ E+ +RRE+Q E+NK HNI P S K K  ++ +    + 
Sbjct: 546 NANGKAILYADKITPAMQQAMAESQQRRERQQEYNKAHNITPASSKRKKADINNNEPAQH 605

Query: 741 AAT--TNISIDAQQLSLSKKKG 760
           +    +N+S   QQ++ ++K+ 
Sbjct: 606 SVEFCSNLSELCQQITATEKEL 627


>gi|307353384|ref|YP_003894435.1| excinuclease ABC subunit B [Methanoplanus petrolearius DSM 11571]
 gi|307156617|gb|ADN35997.1| excinuclease ABC, B subunit [Methanoplanus petrolearius DSM 11571]
          Length = 656

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/668 (50%), Positives = 442/668 (66%), Gaps = 19/668 (2%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K    F++ +D+ P+G QP AI +L +G++  E+ Q LLGVTGSGKTFT+A VIE  Q+P
Sbjct: 2   KTEKKFKLVSDFAPAGSQPEAIKELDEGLNKGERFQTLLGVTGSGKTFTIANVIEYYQKP 61

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LAAQLY+EFK FFP N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +I
Sbjct: 62  VLVLAHNKTLAAQLYNEFKEFFPGNRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKI 121

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           ++MR +AT SLL R D IVV+SVS IYG+G+ E++  +  +LK GD +++ +LL  LV  
Sbjct: 122 EQMRLAATASLLSRTDVIVVASVSAIYGLGNPENFENLGFELKAGDRIKRNDLLMKLVDI 181

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            ++R D  ++ G FRV GD+I++ P +  ++  R+ MFG++IE ISE    TG  +  ++
Sbjct: 182 LFERNDTELMPGRFRVRGDTIDLIPGYFNNI-IRIEMFGDEIERISEVDKNTGDILEPMK 240

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              +Y   HYV P      A++ IK EL+ RL  L      LEA RL+QR  YD+EM+E 
Sbjct: 241 YFFVYPARHYVIPEEEKAAAIEAIKAELEERLPLLG----PLEAHRLKQRTLYDMEMIEE 296

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
           TGSC+ IENYSR+   R  GE P  L +Y P+D LL VDESH T+PQ+ GMY GD  RK 
Sbjct: 297 TGSCKGIENYSRHFDRRAEGEKPFCLLDYFPDDFLLVVDESHQTLPQVRGMYNGDRSRKI 356

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L +YGFRLPS  DNRPL F E+       I VSATPG +E E     +VEQIIRPTGLV
Sbjct: 357 PLVDYGFRLPSAFDNRPLVFNEFEEYMRHVIFVSATPGIYEEEHSLN-VVEQIIRPTGLV 415

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP VEIR  R Q+ DV +EI    ++G R+L+T LTK++AE+LTE+L  + I+ RY+HS+
Sbjct: 416 DPLVEIRPVRGQMADVLEEIRKTTEKGDRVLITTLTKKLAEELTEFLASKKIKTRYLHSD 475

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +KT+ER EIIR+LRLGKFDVLVGINLLREGLDIPE G + ILDADKEGFLR   SLIQ I
Sbjct: 476 IKTIERTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGILDADKEGFLRDSRSLIQII 535

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN NS V+LYAD +T SI+ A+ ET RRR  QLE NK H I P ++K+ + E    
Sbjct: 536 GRAARNANSYVVLYADNMTDSIKKAVSETERRRNMQLEFNKAHGIVPVTIKKPVRE---- 591

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                              + K +    +  L   M  AA+ L+FE A  +RD I++L  
Sbjct: 592 ---------KEIDIKDIKHIPKAEIPNLIIELEADMDAAAEALDFERAIVLRDRIRQLSE 642

Query: 796 SPYFQGLD 803
                G  
Sbjct: 643 EAEEGGGK 650


>gi|315453940|ref|YP_004074210.1| excinuclease ABC subunit B [Helicobacter felis ATCC 49179]
 gi|315132992|emb|CBY83620.1| excinuclease ABC subunit B [Helicobacter felis ATCC 49179]
          Length = 655

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/660 (46%), Positives = 433/660 (65%), Gaps = 9/660 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  FQ+   Y  S +Q   +  L +G+    + Q L+GVTGSGKTF+MA +I  +Q P +
Sbjct: 1   MPNFQLHAPYAMSLEQEKVVQTLSEGVEQGARYQTLIGVTGSGKTFSMANLIARLQMPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M+ NK L AQLYSEFK FFP N VEYF+S++DYYQPE+Y+PR D +IEK+SSINE ++R
Sbjct: 61  IMSHNKTLCAQLYSEFKGFFPKNHVEYFISHFDYYQPESYIPRRDLFIEKDSSINEDLER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SA  SLL   D IVV+SVS  YG+G+   Y  M+ ++++G     K+ L  LV+  Y
Sbjct: 121 LRLSAVTSLLSYEDVIVVASVSANYGLGNPAEYLSMLEKIQVGQVRPYKQFLLKLVEMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            RQ+I + RG FRV G+ ++IFP++ ++   R+  FG++IE I+    L    ++ +++ 
Sbjct: 181 SRQEI-LERGKFRVVGECVDIFPAYNDENFIRIEFFGDEIERITSMDALENTPLKQLDSY 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +YA + ++     L  A+K I++EL+ RL   ++  + LE +RL+ R  +DLEM+  TG
Sbjct: 240 PLYAANAFIVSPERLQQAIKDIEQELQARLSFFKQAQKPLEYERLKTRTEFDLEMISATG 299

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPE---DSLLFVDESHVTIPQISGMYRGDFHRK 494
            C+ IENY+R+ TG+  GE P TL +Y  +     L+ VDESHV++PQ  GMY GD  RK
Sbjct: 300 ICKGIENYARHFTGKQEGETPYTLMDYFAQKQRPFLVIVDESHVSLPQFKGMYAGDLSRK 359

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L +YGFRLP  +DNRPL++EE+    P  + VSATP   ELE  QG I +QIIRPTGL
Sbjct: 360 QVLVDYGFRLPCALDNRPLQYEEFITKPPHFLFVSATPNPLELELSQGHIAQQIIRPTGL 419

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP  E+R    QV D+++ I     +  R+L+T LTKRMAE+L ++  E  +RV+Y+HS
Sbjct: 420 LDPEYEVRPVANQVRDLFESIKEVVSRHERVLVTTLTKRMAEELCKHYLEWGLRVQYLHS 479

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  +ER  +IR+LRLG FDVL+GINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQT
Sbjct: 480 DIDAIERNHLIRELRLGVFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQT 539

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           +GRAAR+V  KV+ YAD IT S+Q A+  +  RR KQ   N +H I P+SV+  + E + 
Sbjct: 540 MGRAARHVRGKVLFYADKITASMQKAMQISDERRAKQKAFNAEHGIEPKSVQRHVEEELI 599

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             L      +          + K +    +K+LR QM   A  L+FEEAAR+RDEI R++
Sbjct: 600 DSLPAKPKRSKA-----LEKMPKSEKDRLIKTLRAQMQQRAKVLDFEEAARLRDEIARIR 654


>gi|293363472|ref|ZP_06610228.1| excinuclease ABC, B subunit [Mycoplasma alligatoris A21JP2]
 gi|292552821|gb|EFF41575.1| excinuclease ABC, B subunit [Mycoplasma alligatoris A21JP2]
          Length = 657

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/660 (45%), Positives = 443/660 (67%), Gaps = 4/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ++ +Y PSGDQP AI ++ +GI    K Q+L GVTGSGKTFT+A VI+   RP +
Sbjct: 1   MSIFQLRANYKPSGDQPKAIQEISEGIAEGLKHQVLEGVTGSGKTFTVANVIQNFDRPVL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LA+QLYSE K+FFPHNAVEYFVSY+DYY+PEAY+P +DTYIEK S  N+ I+ 
Sbjct: 61  VLSHNKTLASQLYSELKSFFPHNAVEYFVSYFDYYRPEAYLPTSDTYIEKTSKTNQDIEL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R S   SLL+R D IVV+SVS IYG  +   Y + I+++ +G     K+ L +LVK +Y
Sbjct: 121 LRMSTINSLLKRRDVIVVASVSSIYGALNPNEYQKGILEIFVGLDFVFKDFLRTLVKIKY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI    G+F V GD+I I P+  ED   R+  FG+ IEEIS    +T   I+  +T 
Sbjct: 181 DRNDIDNPPGSFSVKGDTILISPADSEDYLLRIDFFGDTIEEISHVDKITKNVIKTFKTY 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY    Y       +T +  IK+E++ R    ++   LLEAQR+ +R+  D++ +   G
Sbjct: 241 FIYPGEAYTVSNSVFDTILPMIKQEMENREKYFKENNLLLEAQRISERVKNDMDDMAEYG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENY+ YL GRN G+ P TLF+Y+P D++LF+DESH+ IPQ++GMY+GD  RK TL
Sbjct: 301 FCSGIENYTMYLDGRNFGQRPFTLFDYLPSDTILFLDESHMMIPQLNGMYKGDRARKQTL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRP-TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
            +YGFRLPS ++NRPL+FEE+        I +SATP  +EL++ +G++ +  +RPTGL+D
Sbjct: 361 VDYGFRLPSALENRPLKFEEFENSFDYQRIYISATPNEYELDKSEGLVTKLYVRPTGLLD 420

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EI+  + Q+ED++D+I     +  R ++   TKR AE+L+ Y+  R ++  Y+HS+ 
Sbjct: 421 PILEIKPTKNQIEDIFDQIQGQITKDQRAIILTTTKRSAEELSSYMQTRKVKSAYIHSDY 480

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T +R +I+R LR G +DV++GINLLREG+D+PE  LV +LDADKEGF+R+K+SLIQ  G
Sbjct: 481 DTFKRNDILRKLRKGIYDVVIGINLLREGIDLPEVSLVVVLDADKEGFMRNKSSLIQIAG 540

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN + +VI YAD +TKS++    +   +R  Q+ +NKKHNI PQ++ ++I+E I   
Sbjct: 541 RAARNKDGRVIFYADVLTKSLKECFKDNEYKRNLQIAYNKKHNIIPQTIYKEILEPIQGH 600

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            ++++    +S + +   +SK++    +K ++ QM  AA +L++E A  +RD +  ++ +
Sbjct: 601 EIDNSLELVLSKNKK---ISKQEKDEMIKKIKIQMKQAAKDLDYERAIELRDLVIEIEKN 657


>gi|148377644|ref|YP_001256520.1| excinuclease ABC subunit B [Mycoplasma agalactiae PG2]
 gi|148291690|emb|CAL59076.1| UvrABC system protein B [Mycoplasma agalactiae PG2]
          Length = 669

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/664 (44%), Positives = 420/664 (63%), Gaps = 8/664 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P+GDQP AI +L++GI +  K Q+L GVTGSGKTFT+A VI    RP +
Sbjct: 1   MYSFKLHSSYAPAGDQPKAINELVEGIKNNVKEQVLQGVTGSGKTFTIANVINQFNRPVL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LA QLY+E K FFP N VEYFVSY+DYY+PEAY+P +D+YI+K S  N +ID 
Sbjct: 61  VLSHNKTLAGQLYTELKGFFPENKVEYFVSYFDYYRPEAYIPSSDSYIDKTSKRNAEIDS 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SA  S+L RND IVV+SVS IYG  +   Y    + +  G  + + + + SL+K+ Y
Sbjct: 121 MRMSAVNSILSRNDTIVVASVSAIYGALNPYEYENNFMTIHKGQKISRNDFIRSLIKRNY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+    G+F V GD + I P +      RV  FG++IE I   +P+T +   + +  
Sbjct: 181 FRNDVNSELGSFAVKGDLVLIQPVYDNSFMIRVDFFGDEIESIKTMHPITKEVFASYDEF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++    Y      L   ++  + EL+ R+   EK  RLLEAQR+++R+  DL+ L   G
Sbjct: 241 LLFPGDAYTVNNDILKQTVELARIELEERIAYFEKNNRLLEAQRIKERVERDLDSLAEFG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI-PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           +C  IENYS YL  R  G+ P TL +Y   ++ ++F+DESH+ IPQ+  M++GD  RK  
Sbjct: 301 TCPGIENYSMYLDNRTFGQRPYTLLDYFHDKNPIVFIDESHMMIPQLRAMFKGDRSRKQA 360

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLR-PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           L +YGFRLPS +DNRPL FEE+        I +SATP  +EL++  G++    +RPTGL+
Sbjct: 361 LVDYGFRLPSALDNRPLTFEEFENSFDFQKIYISATPDEYELDKTHGVVTTLFVRPTGLL 420

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           +P +E+R A+ Q+E++YDE+    ++G R L+   TK +AE+LT Y  E+N ++ Y+HSE
Sbjct: 421 NPSIEVRPAKGQIENIYDELQKQKEKGERTLILTTTKSLAEELTRYFMEKNEKIAYIHSE 480

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            KT ER EI+R LR G +D +VGINLLREG+D+PE  L+ +LDAD E F RS  SLIQ  
Sbjct: 481 HKTFERNEILRKLRKGIYDCVVGINLLREGIDLPEVSLIMVLDADNESFFRSTRSLIQIT 540

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN N +VI YAD+++KS+Q  I + +  R+ Q E+N KHNI P+++ + I E I  
Sbjct: 541 GRAARNSNGRVIFYADSVSKSMQETILQNSEIRQIQEEYNLKHNIVPKTIIKPIPEPIHN 600

Query: 736 ILLEDAAT---TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             + DA +    N S   Q   LSK +    ++ LRKQM  AA  L++E A  IRD I  
Sbjct: 601 QKMADAISFYFKNSSSKNQDGKLSKDEL---IEKLRKQMEQAAKELDYERAMEIRDIIIE 657

Query: 793 LKSS 796
           L+  
Sbjct: 658 LREG 661


>gi|291320334|ref|YP_003515596.1| UvrABC system protein B [Mycoplasma agalactiae]
 gi|290752667|emb|CBH40640.1| UvrABC system protein B [Mycoplasma agalactiae]
          Length = 669

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/661 (44%), Positives = 418/661 (63%), Gaps = 2/661 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P+GDQP AI +L++GI +  K Q+L GVTGSGKTFT+A VI    RP +
Sbjct: 1   MYSFKLHSSYAPAGDQPKAINELVEGIKNNAKEQVLQGVTGSGKTFTIANVINQFNRPVL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LA+QLY+E + FFP N VEYFVSY+DYY+PEAY+P +D+YI+K S  N +ID 
Sbjct: 61  VLSHNKTLASQLYTELRGFFPENKVEYFVSYFDYYRPEAYIPSSDSYIDKTSKRNAEIDS 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SA  S+L RND IVV+SVS IYG  +   Y    + +  G  + + + + SL+K+ Y
Sbjct: 121 MRMSAVNSILSRNDTIVVASVSAIYGALNPYEYENNFITIHKGQKISRNDFIRSLIKRNY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+    G+F V GD + I P +      RV  FG++IE I   +P+T +   + +  
Sbjct: 181 FRNDVNSELGSFAVKGDLVLIQPVYDNSFMIRVDFFGDEIESIKTMHPITKEVFASYDEF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++    Y      L   ++  K EL+ R+   +K  RLLEAQR+++R+  DL+ L   G
Sbjct: 241 LLFPGDAYTVNNDILKQTVELAKIELEERIAYFKKNNRLLEAQRIKERVERDLDSLAEFG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI-PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           +C  IENYS YL  R  G+ P TL +Y   ++ ++F+DESH+ IPQ+  M++GD  RK T
Sbjct: 301 TCPGIENYSMYLDNRTFGQRPYTLLDYFHDKNPIVFIDESHMMIPQLRAMFKGDRSRKQT 360

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLR-PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           L +YGFRLPS +DNRPL FEE+        I +SATP  +EL++  G++    +RPTGL+
Sbjct: 361 LVDYGFRLPSALDNRPLTFEEFENSFDFQKIYISATPDEYELDKTHGVVTTLFVRPTGLL 420

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           +P +E+R A+ Q+E++YDE+    ++G R L+   TK +AE+LT Y  E+N ++ Y+HSE
Sbjct: 421 NPSIEVRPAKGQIENIYDELQKQKEKGERTLILTTTKSLAEELTRYFMEKNEKIAYIHSE 480

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            KT ER EI+R LR G +D +VGINLLREG+D+PE  L+ +LDAD E F RS  SLIQ  
Sbjct: 481 HKTFERNEILRKLRKGIYDCVVGINLLREGIDLPEVSLIMVLDADNESFFRSTRSLIQIT 540

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN N +VI YAD+++KS+Q  I + +  R+ Q E+N KHNI P+++ + I E I  
Sbjct: 541 GRAARNSNGRVIFYADSVSKSMQETILQNSEIRQIQEEYNLKHNIVPKTIIKPIPEPIHN 600

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
             + DA +      + +    K      ++ LRKQM  AA  L++E A  IRD I  L+ 
Sbjct: 601 QKMADAISFYFKNSSSKNQDDKLSKDELIEKLRKQMEQAAKELDYERAMEIRDIIIELRE 660

Query: 796 S 796
            
Sbjct: 661 G 661


>gi|89071985|ref|ZP_01158581.1| excinuclease ABC subunit B [Photobacterium sp. SKA34]
 gi|89052086|gb|EAR57537.1| excinuclease ABC subunit B [Photobacterium sp. SKA34]
          Length = 656

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/622 (50%), Positives = 433/622 (69%), Gaps = 2/622 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP A+A+L+  I      Q L GVTGSGKTFTMA +I  +QRP +++A
Sbjct: 6   FILHSAYPPSGDQPEALARLIGNIQDGVTHQTLQGVTGSGKTFTMANMIHRLQRPTLILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K FFP NAVEYFVSYYDYYQPE Y+P +D +I K+S++N+Q++R+R 
Sbjct: 66  HNKTLAAQLYSEMKRFFPENAVEYFVSYYDYYQPEVYIPGSDRFIRKDSAVNQQLERLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+SL+ER D IVV+SVS IYG+G    Y  + + L +G ++++++ +  LV  QY R 
Sbjct: 126 STTKSLIERKDVIVVASVSAIYGLGDPAQYRAVQIPLSVGMTIDREDFIQRLVALQYSRC 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  I R TFRV G+  +I+P+  E  + RV MF + IE++    P+TG+ + +++   + 
Sbjct: 186 ERTIERATFRVHGEIFDIYPADSESKSVRVVMFDDTIEQLQWLDPITGKVMGDIDHYFVS 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y   +  L  A   I++EL+MR+ EL  E R++EA RL +R T+D+EM++  G C 
Sbjct: 246 PKTLYAASKDKLLKASIEIQKELEMRVAELNNENRIVEAARLYERTTHDIEMMQQLGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS YL  R+P  PP TL +Y+PED LLF+DESHV IPQIS MYR D  RK TL +Y
Sbjct: 306 GLENYSCYLNDRDPTLPPTTLLDYLPEDGLLFIDESHVMIPQISAMYRSDVSRKETLIDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPL F+E+  ++P T+ VSATPG +EL++    ++EQIIRPTGL+DP VE
Sbjct: 366 GFRLPSAKNNRPLMFKEFEQIKPQTVFVSATPGDYELKKSDQHVIEQIIRPTGLLDPIVE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQ +D+  EI+   Q+  R+L+T LTK+ AE L E + E+ I+V Y+HSEVKT +
Sbjct: 426 VRPLATQTDDLLKEISERTQKDERVLVTTLTKKSAEALYELMSEQGIKVSYIHSEVKTEQ 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR G FDVL+GINLLREGLDIPE  LVA+L+AD  GFLRS  +LIQ IGRAAR
Sbjct: 486 RVEIIDDLRAGTFDVLIGINLLREGLDIPEASLVAVLNADHAGFLRSTQALIQIIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV--KEKIMEVIDPILL 738
           N N K ILYAD IT ++Q A+ E+ +RRE+Q+E+NK HNI P S   K+  ++  +P   
Sbjct: 546 NANGKAILYADKITPAMQQAMTESQQRRERQVEYNKAHNITPASSQRKKAAIDNNEPTQH 605

Query: 739 EDAATTNISIDAQQLSLSKKKG 760
                +N+S   QQ++ ++K+ 
Sbjct: 606 SIEFCSNLSELCQQITATEKEL 627


>gi|294155867|ref|YP_003560251.1| excinuclease UvrABC system, helicase subunit (UvrB) [Mycoplasma
           crocodyli MP145]
 gi|291600200|gb|ADE19696.1| excinuclease UvrABC system, helicase subunit (UvrB) [Mycoplasma
           crocodyli MP145]
          Length = 657

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/660 (44%), Positives = 436/660 (66%), Gaps = 4/660 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ +Q++ +Y PSGDQP AI +L +G+    K Q+L GVTGSGKTFT+A VI+   RP +
Sbjct: 1   MSIYQLRANYKPSGDQPRAIQELSEGVAEGLKHQVLEGVTGSGKTFTIANVIQNFDRPVL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LA+QLYSE K+FFPHNAVEYFVSY+DYY+PEAY+P +DTYIEK S  N+ I+ 
Sbjct: 61  VLSHNKTLASQLYSELKSFFPHNAVEYFVSYFDYYRPEAYIPTSDTYIEKTSKTNQDIEL 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R S   SLL R D IVV+SVS IYG  + + Y + I ++  G     KE L +L+K +Y
Sbjct: 121 LRMSTINSLLRRRDTIVVASVSSIYGALNPQEYQKGIFEIFKGMDFNFKEFLRTLIKIKY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R DI     TF V GD++ I P+  ++   R+  FG+ IE I +   +T   I+  +  
Sbjct: 181 DRNDIDNPPATFAVRGDTVFISPADSDEFLLRIDFFGDTIEAIYKVDKVTKNIIKEFKVY 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY    Y       +  +  I+EEL  R+    +  +LLEAQR+ +R+  D++ +   G
Sbjct: 241 AIYPGEAYTVENSIFDKILPMIQEELNQRIKYFNENNKLLEAQRISERVKNDMDEMAEYG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENY+ YL GR+  + P TLF+Y+P D+++F+DESH+ IPQ+ GMY+GD  RK TL
Sbjct: 301 FCGGIENYTMYLDGRDFNQRPFTLFDYLPNDTIIFLDESHMMIPQLHGMYKGDRARKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLR-PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
             YGFRLPS ++NRPL+F E+        I +SATP  +E++Q QG++ +  +RPTGL+D
Sbjct: 361 VNYGFRLPSALENRPLKFHEFEQAFDFQKIYISATPNEYEIDQSQGLVTKLYVRPTGLLD 420

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +E+R  + Q+ED++DEI +   +  R ++   TKR AE+L+ Y+ +RNI+  Y+HSE 
Sbjct: 421 PILEMRPTKNQIEDIFDEIKIQNDKNQRTIVLTTTKRSAEELSSYMQKRNIKSAYIHSEY 480

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T +R EI+R LR G +DV++GINLLREG+D+PE  LV +LDADKEGF+R+++SLIQ  G
Sbjct: 481 DTFKRNEILRKLRKGIYDVVIGINLLREGIDLPEVSLVVVLDADKEGFMRNRSSLIQIAG 540

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN + +VI YAD  TKS++   ++   +RE Q+ +NKKHNI PQ++ ++I E I   
Sbjct: 541 RAARNKDGRVIFYADVETKSLKATFEDNKEKRELQIAYNKKHNITPQTIYKEIAEPIQGH 600

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            +++A    ++ D +   ++K+  +  +K ++ QM  AA +L++E A  +RD I  ++ S
Sbjct: 601 DIDNALEAVLAKDKK---ITKQDKEELIKKIKVQMKQAAKDLDYERAIELRDLIIEIEKS 657


>gi|289064128|gb|ADC80465.1| putative UvrABC system protein B [Comamonas testosteroni]
          Length = 658

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/590 (51%), Positives = 417/590 (70%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + ++Y P+GDQP AIA+LL  +      Q L G+TGSGKTFTMA VI  ++RP +++
Sbjct: 5   MFILHSNYTPAGDQPEAIARLLSDLEEGATHQTLKGITGSGKTFTMANVIHRLKRPTLIL 64

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           APNK L AQLYSE K+FFP NAVEYFVSYYDY+QPE Y+P +D +I+K+S+IN+ ++R+R
Sbjct: 65  APNKTLTAQLYSEMKHFFPENAVEYFVSYYDYFQPEVYIPGSDRFIQKDSAINDHLERLR 124

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            S T+SL+ER D IVV+SVS IYG+G  ++Y  + + L  G ++ Q+EL+  LV  QY+R
Sbjct: 125 LSTTKSLIERRDVIVVASVSSIYGLGDPDAYRALQMALSPGANLNQRELIRRLVLLQYER 184

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +  + R TFRV G+ I+IFP+  E  A RV +  + +E +    P+TG+ +  ++   +
Sbjct: 185 TERTLKRATFRVRGEVIDIFPADSEHRAVRVELLDDSVESVQWLDPVTGKTLGKIDHYLV 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
              + + TP   + +A + I  E++ R+ +L ++ RL+EA RL +RIT D+EM+   G C
Sbjct: 245 SPKTLFATPTNKIESASEKILAEMEERVAQLNRDNRLVEANRLYERITNDVEMMRELGYC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +ENYS Y + R+   PP TL +Y+P+D LLFVDESHV +PQIS MYRGD  RK TL +
Sbjct: 305 SGMENYSCYFSDRDSAAPPITLLDYLPKDGLLFVDESHVMVPQISAMYRGDQARKDTLID 364

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS  +NRPL F E+  ++P TI VSATPG +EL   +G +VEQIIRPTGL+DP V
Sbjct: 365 YGFRLPSSKNNRPLNFGEFEKVKPQTIFVSATPGEYELRVSKGRVVEQIIRPTGLLDPKV 424

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R A  ++ D+  EI+   ++  R+L+T LTK  AE+LT++L +  IR RYMHS++K  
Sbjct: 425 EVRKADGRMNDLLAEISTCVKRKDRVLVTTLTKVGAEELTDFLTDSGIRARYMHSDIKAE 484

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R+EII  LR G+FDVL+G++LLREGLDIPE  LVAILDAD+ GFLRS  +LIQ IGR A
Sbjct: 485 DRVEIINGLRAGEFDVLIGVSLLREGLDIPEASLVAILDADRAGFLRSAQALIQMIGRVA 544

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           RN N K ILYAD +T ++Q AIDET RRRE Q+  N+++ I+P S   K+
Sbjct: 545 RNENGKAILYADAMTPAMQQAIDETNRRRELQIAFNEENGISPTSSVRKL 594


>gi|330447708|ref|ZP_08311356.1| excinuclease ABC, B subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491899|dbj|GAA05853.1| excinuclease ABC, B subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 656

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/620 (50%), Positives = 425/620 (68%), Gaps = 2/620 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP A+A+L+  I S    Q L GVTGSGKTFTMA +I  +QRP +++A
Sbjct: 6   FILHSAYPPSGDQPEALARLIGNIQSGVPHQTLQGVTGSGKTFTMANMIHRLQRPTLILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE K FFP NAVEYFVSYYDYYQPE Y+P +D +I K+S+INEQ++R+R 
Sbjct: 66  HNKTLAAQLYSEMKRFFPENAVEYFVSYYDYYQPEVYIPGSDRFIRKDSAINEQLERLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+SL+ER D IVV+SVS IYG+G  E Y  + + L +G ++++++ +  L   QY R 
Sbjct: 126 STTKSLIERKDVIVVASVSAIYGLGDPEQYRAVQIPLSVGMTLDREDFIQRLAALQYSRC 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  I R TFRV G+  +IFP+  E  A RV MF + IE++    PLTG+ + ++E   + 
Sbjct: 186 ERTIERATFRVHGEIFDIFPADSESKAVRVVMFDDTIEKLQWIDPLTGKVLGDIEHYFVS 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y   R  L  A   I+++L+ R+ EL  + R++EA RL +R  +D+EM++  G C 
Sbjct: 246 PKTLYAASREKLQKASIEIEKDLEARVAELNDQNRIVEAARLYERTMHDIEMMQQLGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS YL  R+P  PP TL +Y+P+D LLF+DESHV IPQIS MYR D  RK TL +Y
Sbjct: 306 GLENYSCYLNDRDPALPPTTLLDYLPKDGLLFIDESHVMIPQISAMYRSDESRKETLIDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPL F E+  L+P T+ VSATPG +EL++ Q  + EQIIRPTGL+DP VE
Sbjct: 366 GFRLPSAKNNRPLMFSEFEKLKPQTVFVSATPGEYELKKSQQHVTEQIIRPTGLLDPIVE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   +Q ED+  EI    Q+  R+L+T LTK+ AE L + + E  I+V Y+HS+VKT +
Sbjct: 426 VRPLASQTEDLLKEIAERTQKDERVLVTTLTKKSAEALYDVMTELGIKVSYIHSDVKTEQ 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII DLR GK+DVL+GINLLREGLDIPE  LVA+L+AD  GFLRS  +LIQ IGRAAR
Sbjct: 486 RVEIIDDLRAGKYDVLIGINLLREGLDIPEASLVAVLNADHAGFLRSTQALIQIIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV--IDPILL 738
           N N K ILYAD IT ++Q A+ E+ +RRE+Q  +N+ H I P S + +   +   +P   
Sbjct: 546 NANGKAILYADKITPAMQQAMSESQQRRERQEAYNQAHQITPASSQRQKANIENQEPAQH 605

Query: 739 EDAATTNISIDAQQLSLSKK 758
             A   N+S   QQ++ ++K
Sbjct: 606 TTAFCANLSELCQQITATEK 625


>gi|216263442|ref|ZP_03435437.1| excinuclease ABC, B subunit [Borrelia afzelii ACA-1]
 gi|215980286|gb|EEC21107.1| excinuclease ABC, B subunit [Borrelia afzelii ACA-1]
          Length = 664

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/658 (46%), Positives = 442/658 (67%), Gaps = 6/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 1   MIDFFLKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKNLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINSEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQRISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R  I + R  F + GD IEI+PS    + A+R+    ++I +I      + + +    +
Sbjct: 181 ERTLINLERDKFSIKGDIIEIWPSSEHGEFAYRICFDFDEIVKIYRISSFSKKNLGATNS 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEML  T
Sbjct: 241 FTLFAKSYFVIPYQNVLEAIPKISYDLDLQCQYFKDNGKLVEAERLKQRVEYDLEMLRET 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS+YL+G   G  P  LF++ P+D LLFVDESHVT+PQ  GMY GD+ RK  
Sbjct: 301 GFCSGIENYSKYLSGSTMG-RPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDYSRKLN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  +GFRLP+ ++NRPL+++E++ L    + VSATPG  E E+   +IV+QIIRPTGLVD
Sbjct: 360 LVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPGFEENEKS-SVIVDQIIRPTGLVD 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    ++ +Y+HSE+
Sbjct: 419 PEIITRHSDGQMEDLYIEIQKRVALKERVLITTLTKKMSEDLTEYLVTLGVKAKYLHSEL 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLIQTIG
Sbjct: 479 DTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSATSLIQTIG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++NKK+NI P+++ +KI  +++  
Sbjct: 539 RAARNSNGLVIMYYDKISVAMREAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNILEKE 598

Query: 737 LLEDAATTNISIDAQQLSLSKK-KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L  +    NIS D +++   +K   K  +  L+ ++  A ++  FE+A  +RD+IK L
Sbjct: 599 L--NNKNKNISYDFEKMVSGEKLSKKKLIDKLKFELEEAVNDERFEDAIVLRDKIKEL 654


>gi|47459407|ref|YP_016269.1| excinuclease ABC subunit B [Mycoplasma mobile 163K]
 gi|81614104|sp|Q6KH72|UVRB_MYCMO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|47458737|gb|AAT28058.1| excinuclease ABC helicase subunit B [Mycoplasma mobile 163K]
          Length = 659

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/656 (47%), Positives = 434/656 (66%), Gaps = 2/656 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P+GDQP AI +L++G+   +K Q+LLGVTGSGKTFT+A VI+A  RP ++++
Sbjct: 6   FELVSTYKPTGDQPRAIQELIEGLEQNKKSQVLLGVTGSGKTFTIANVIKAANRPVLLLS 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA+QLYSE K+FFP+N VEYFVSY+DYY+PEAY+P TDTYI+K +  N  ++ MR 
Sbjct: 66  HNKTLASQLYSELKDFFPNNRVEYFVSYFDYYRPEAYMPNTDTYIDKTTKSNWDLEEMRM 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S   S+  + D IVV+SV+ IYG    + Y      + I   + +KE L  LV++ YKR 
Sbjct: 126 STLNSISTKRDTIVVASVASIYGALKPKEYWSAFYNISIAQKISRKEFLLDLVQRGYKRN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           ++    G+F   GD ++I P+  +    RV  FG++IE+IS         I   +   I+
Sbjct: 186 NVASEPGSFNAKGDFVDIIPAWTKGFHIRVEFFGDEIEKISTIDSNNKITIEKFKEYLIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S Y  P  T+  A+  I+EEL  RL   EKEG+LLE QRLE R   DLE LE  G C 
Sbjct: 246 PASAYTAPTGTIEAAVLRIREELHQRLEYFEKEGKLLEKQRLEDRTRNDLESLEEFGFCP 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR  GE P TLF+Y+P D+LL +DESH+ IPQ++GMY GD  RK  L  Y
Sbjct: 306 GIENYSRHVDGRAEGEQPFTLFDYLPNDALLIIDESHMMIPQLNGMYNGDRARKLNLVNY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+F E+       I +SATP  +E+ Q  G IV+QIIRPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLQFHEFEKYEFQKIYISATPSDYEINQAHGEIVKQIIRPTGLLDPLIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR  + QVED++DEI     +  R L+   TK+++E+LT Y  E+  +V Y+HS+  T E
Sbjct: 426 IRREQNQVEDMFDEIQKQKAKKQRTLILATTKKVSEELTRYFQEKKEKVAYIHSDYTTFE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI+R LR G +D ++GINLLREG+D+PE  L+ +LDA+KE F RSK SLIQ +GRAAR
Sbjct: 486 RNEILRKLRKGVYDTVIGINLLREGIDLPEVSLIMVLDANKESFFRSKKSLIQIVGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN +VI YA+ I+KS++  I +   +R+ Q+++NKKHNI P+++ + I E I+   L +
Sbjct: 546 NVNGRVIFYANNISKSMEETIYDNLDKRKIQMDYNKKHNIIPKTIIKPITEAIEDKKLNE 605

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           +  + +S    + S+  K+ +A +K LR QM  A+  LNFE AA +RD I  L+++
Sbjct: 606 SLISFMSHSKTKKSI--KEKEALVKDLRNQMLDASKQLNFERAAELRDIILELEAN 659


>gi|282856668|ref|ZP_06265936.1| excinuclease ABC, B subunit [Pyramidobacter piscolens W5455]
 gi|282585517|gb|EFB90817.1| excinuclease ABC, B subunit [Pyramidobacter piscolens W5455]
          Length = 683

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/662 (47%), Positives = 433/662 (65%), Gaps = 8/662 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + PSGDQP AI  LL+G+   EK   L+GVTGSGKTFT+A V+    RP +V+A
Sbjct: 6   FKLHAPWPPSGDQPQAIESLLEGLERGEKCSTLMGVTGSGKTFTVANVVAKYDRPTLVLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL+SEFK FFP NAV Y+VSYYDYYQPEAY+P +DT+IEK++SIN QI+RMR 
Sbjct: 66  HNKTLAAQLFSEFKRFFPENAVHYYVSYYDYYQPEAYIPSSDTFIEKDASINTQIERMRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T+SL+ER D IVV+SVSCIYG+G  ++Y   IV   +G+   ++    +L+K  Y+R 
Sbjct: 126 ATTKSLIERRDVIVVASVSCIYGMGKRKNYEDAIVNFSVGERWNRRSFQEALMKAYYERN 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  +  G +RV GD +E++P +  D   R S F  ++E I E  P++G+     + + ++
Sbjct: 186 DFDLQPGKYRVRGDVLEVYPVYS-DATLRFSFFDEELESIEEVDPVSGRSTARKQHVSVF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
              HYVT    +  +M  IK E+++++   + EG+ LEA+RL  R  YD+EML   G C 
Sbjct: 245 PAQHYVTSDGAIAESMDKIKREMELQVGRFKSEGKYLEAERLGSRTRYDMEMLAEAGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL GR  GE P TL ++ P D L+ VDESH+T+PQ+ GM+ GD  RK  L E+
Sbjct: 305 GIENYSRYLDGRAEGEQPGTLIDFFPPDFLMIVDESHITLPQVRGMFNGDRARKEVLVEH 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPSC+DNRPL++ E+       +  SATPG WEL   +  +VEQ+IRPTG+ DP VE
Sbjct: 365 GFRLPSCLDNRPLKWHEFERYMQRVVCCSATPGDWELAHSR-RVVEQLIRPTGIADPEVE 423

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A  Q++D+  EI      G R L+T LTK+ AE+L  Y+    ++  Y+HSE+   E
Sbjct: 424 VRKATGQIDDLLAEIQKVRGAGGRCLVTTLTKKGAEELAGYMRTLRVKSEYIHSELNAFE 483

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R E I  LR G  +VL+G+NLLREG+D+PE  LVAILDAD+EGFLRS  SL+Q +GRAAR
Sbjct: 484 RAEEINHLRSGDIEVLIGVNLLREGIDMPEVTLVAILDADREGFLRSYRSLVQVMGRAAR 543

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NV+S+VILYAD +T SI+ A+ E+ RRRE QL++N++H+I PQ++ + I  ++  +  E 
Sbjct: 544 NVDSRVILYADEVTDSIREAVGESKRRREAQLKYNEEHHIVPQTIHKSIERMLPEVEFEA 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
           A         Q +     +       L K M  A + L FE+AA+IRD I+ ++     Q
Sbjct: 604 APEAKNKRAQQHIEHMDNEA------LEKLMWEAVEKLQFEKAAKIRDMIQAMEEGRTPQ 657

Query: 801 GL 802
           G 
Sbjct: 658 GG 659


>gi|193222362|emb|CAL62189.2| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
           [Herminiimonas arsenicoxydans]
          Length = 658

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/624 (48%), Positives = 423/624 (67%), Gaps = 4/624 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AIA+LL  I      Q L G+TGSGKTFTMA VI  ++RP +++A
Sbjct: 6   FILHSSYTPAGDQPEAIARLLSDIEEGATHQTLKGITGSGKTFTMANVIHRLKRPTLILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK L AQLY E K+FFP NAVEYFVSYYDY+QPE Y+P TD +I K+S+IN+ ++R+R 
Sbjct: 66  PNKTLTAQLYGEMKHFFPENAVEYFVSYYDYFQPEIYMPGTDRFIPKDSAINDHLERLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+SL+ER D IVV+SVS IYG+G  E+Y  + + L  G  + Q+EL+  L   QY R 
Sbjct: 126 STTKSLIERRDVIVVASVSSIYGLGDPEAYRALQIALSPGVKLNQRELIRRLALLQYDRT 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + R TFR  GD I+IFP+  E  A RV +  + +  +    P+TG+ +  ++   + 
Sbjct: 186 ERTLKRATFRAQGDVIDIFPADSEHRAVRVELLDDSVASVQWLDPVTGKTLGAIDHYLVS 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + +  P   +++A K I  +++ R+ EL +  RL+EA RL +RIT+D+EM+   G C 
Sbjct: 246 PKTLFAPPTNKIDSASKKILADMEERVAELNRNNRLVEANRLYERITHDVEMMREVGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS Y + R+P  PP TL +Y+P+D LLFVDESHV +PQIS MYRGD  RK TL +Y
Sbjct: 306 GMENYSCYFSERDPASPPITLLDYLPKDGLLFVDESHVMVPQISAMYRGDQARKETLIDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPL F E+  ++P TI VSATPG +EL   +  +VEQ+IRPTGL+DP VE
Sbjct: 366 GFRLPSSKNNRPLNFGEFEKVKPQTIFVSATPGDYELRVSKDRVVEQVIRPTGLLDPKVE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R A   ++D+  EI+   ++  R+L+T LTK  AE+LT++L +  IR RYMHS++K  +
Sbjct: 426 VRKADGYIDDLLAEISKCVKKKNRVLVTTLTKVSAEELTDFLTDNGIRARYMHSDIKAED 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII  LR G+FDVL+GI+LLREGLDIPE  LVAILDAD+ GFLRS  +LIQ IGR AR
Sbjct: 486 RVEIINGLRAGEFDVLIGISLLREGLDIPEASLVAILDADRAGFLRSAHALIQMIGRVAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI----MEVIDPI 736
           N N K ILYAD +T +++ AIDET RRR+ Q+  N+++ I+P S   K+        +P 
Sbjct: 546 NENGKAILYADAVTPAMKQAIDETNRRRQLQIAFNEENGISPASSVRKLAGEETNTEEPT 605

Query: 737 LLEDAATTNISIDAQQLSLSKKKG 760
           +  +A   N+S    Q++  +++ 
Sbjct: 606 VHSEAFCENLSDLCDQITAKEQQL 629


>gi|111115671|ref|YP_710289.1| excinuclease ABC subunit B [Borrelia afzelii PKo]
 gi|123046892|sp|Q0SM15|UVRB_BORAP RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|110890945|gb|ABH02113.1| excinuclease ABC, subunit B [Borrelia afzelii PKo]
          Length = 664

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/658 (46%), Positives = 442/658 (67%), Gaps = 6/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 1   MIDFFLKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKNLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINSEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQRISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R  I + R  F + GD IEI+PS    + A+R+ +  ++I +I      + + +    +
Sbjct: 181 ERTLINLERDKFSIKGDIIEIWPSSEHGEFAYRICLDFDEIVKIYRISSFSKKNLGATNS 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEML  T
Sbjct: 241 FTLFAKSYFVIPYQNVLEAIPKISYDLDLQCQYFKDNGKLVEAERLKQRVEYDLEMLRET 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS+YL+G   G  P  LF++ P+D LLFVDESHVT+PQ  GMY GD+ RK  
Sbjct: 301 GFCSGIENYSKYLSGSTMG-RPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDYSRKLN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  +GFRLP+ ++NRPL+++E++ L    + VSATPG  E E+   + V+QIIRPTGLVD
Sbjct: 360 LVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPGFEENEKS-SVTVDQIIRPTGLVD 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    ++ +Y+HSE+
Sbjct: 419 PEIITRHSDGQMEDLYIEIQKRVALKERVLITTLTKKMSEDLTEYLVTLGVKAKYLHSEL 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLIQTIG
Sbjct: 479 DTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSATSLIQTIG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++NKK+NI P+++ +KI  +++  
Sbjct: 539 RAARNSNGLVIMYYDKISVAMREAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNILEKE 598

Query: 737 LLEDAATTNISIDAQQLSLSKK-KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L  +    NIS D +++   +K   K  +  L+ ++  A ++  FE+A  +RD+IK L
Sbjct: 599 L--NNKNKNISYDFEKMVSGEKLSKKKLIDKLKFELEEAVNDERFEDAIVLRDKIKEL 654


>gi|307944241|ref|ZP_07659582.1| UvrABC system protein B [Roseibium sp. TrichSKD4]
 gi|307772587|gb|EFO31807.1| UvrABC system protein B [Roseibium sp. TrichSKD4]
          Length = 713

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/602 (58%), Positives = 439/602 (72%), Gaps = 28/602 (4%)

Query: 36  EVDKTMVADAMRRIRSEAGKHRKNA-AKRMLIHQRENTASKGEFQSQSSISMSEKQTREI 94
           E  K  ++    + + +  K  K+A    M         + G     + + MS ++  ++
Sbjct: 105 EGRKAKLSPKGAKAKGKIEKPAKSARGTSMGKADSARERAAGGLNPVAGLDMSLEEAEQL 164

Query: 95  SE--------------------------QTMTPSVQALARLIQSDNPLLKNGKIWTPHRS 128
            E                          Q  T +V+AL+ LI+S NPL KNG++W PHR 
Sbjct: 165 EEKLKQHKKDNKKKKSAADGRFGDLGGNQGATATVEALSALIESGNPLHKNGELWVPHRP 224

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
                    +   ++ +DY P GDQP AIA L++GI + ++ Q+LLGVTGSGKT+TMA+V
Sbjct: 225 ERPEKSEGGVPI-KLASDYEPKGDQPTAIADLVEGIDNGDQTQVLLGVTGSGKTYTMAQV 283

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           I   QRPA+++APNK LAAQLY EFK+FFP NAVEYFVSYYDYYQPEAYVPRTDTYIEKE
Sbjct: 284 ISRTQRPALILAPNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 343

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SS+NEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE+Y+ M   +++G+ ++Q++L
Sbjct: 344 SSVNEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYTAMTFAIEVGERIDQRQL 403

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           ++ LV  QYKR D    RGTFRV GD+IE+FP+H ED AWRVS+FG++IE I+EF PLTG
Sbjct: 404 IADLVALQYKRNDAAFQRGTFRVRGDTIELFPAHYEDRAWRVSLFGDEIESITEFDPLTG 463

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +K   ++++KIYANSHYVTP+PTLN A K IK ELK RL EL   GRLLEAQRLEQR  +
Sbjct: 464 KKSGELKSVKIYANSHYVTPKPTLNQATKSIKAELKHRLEELNAHGRLLEAQRLEQRTIF 523

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEMLE TGSC  IENYSRYLTGRNPGEPPPTLFEY+P+++L+F DESHVTIPQI  MYR
Sbjct: 524 DLEMLEATGSCAGIENYSRYLTGRNPGEPPPTLFEYLPDNALVFADESHVTIPQIGAMYR 583

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GDF RKATLAEYGFRLPSCMDNRPLRFEEWN +RP +I VSATPGSWE+EQ  G+  EQ+
Sbjct: 584 GDFRRKATLAEYGFRLPSCMDNRPLRFEEWNAMRPQSIAVSATPGSWEMEQSGGVFAEQV 643

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGL+DPPV+IR A +QV+D+  E+   A +G R L+T LTKRMAEDLTEYL+E    
Sbjct: 644 IRPTGLIDPPVDIRPAGSQVDDLLGEVRETAAKGYRTLVTTLTKRMAEDLTEYLHENACV 703

Query: 609 VR 610
             
Sbjct: 704 CA 705


>gi|330443972|ref|YP_004376958.1| excinuclease ABC subunit B [Chlamydophila pecorum E58]
 gi|328807082|gb|AEB41255.1| excinuclease ABC, B subunit [Chlamydophila pecorum E58]
          Length = 663

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/659 (48%), Positives = 426/659 (64%), Gaps = 11/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + P GDQP AIA+L  G+    + Q+LLG TGSGKTFT+A VI     P +V+A
Sbjct: 12  FHLHSPFQPCGDQPEAIAKLCSGLKENVRAQVLLGATGSGKTFTIANVIAQANLPTLVLA 71

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EF+ FFP NAVEYF+SYYDYYQPEAY+ R+DTYIEK   IN++ID++R 
Sbjct: 72  HNKTLAAQLYQEFREFFPENAVEYFISYYDYYQPEAYIARSDTYIEKSLLINDEIDKLRL 131

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRS+LER D ++VSSVSCIYGIGS E+Y  M ++L++G +  +  L S L K  Y+  
Sbjct: 132 SATRSILERRDTLIVSSVSCIYGIGSPENYLSMTLELQVGKAYPRDLLTSQLAKMHYQAS 191

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            +   R  FR  G  +++FP++ E+ A R+    + +  I    PLT     +     +Y
Sbjct: 192 PLP-QRSAFRELGSVLDVFPAY-ENQALRLEFANDTLVSIDICDPLTMLPQSSTTQTILY 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP      A++ I+EEL+ RL   E   R +E +RL QR T+D+EM++  G C+
Sbjct: 250 PGSHYVTPEAIREYAVRSIREELEERLKFFET--RPVEQERLFQRTTHDIEMIKEIGFCK 307

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+ TG  PG PP  L +Y PE+ LL VDESH T+PQI  MYRGD  RK  L EY
Sbjct: 308 GIENYSRHFTGAPPGAPPACLLDYFPEEFLLIVDESHQTLPQIRAMYRGDRSRKEALVEY 367

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE        I VSATPG  EL++ QG IVEQI+RPTG+ DP  E
Sbjct: 368 GFRLPSAFDNRPLTYEEAQKYFRKVIYVSATPGDTELKKSQGHIVEQILRPTGIPDPLPE 427

Query: 561 IRSARTQVEDVYDEINLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           IR A  QV+D+ +EI +   +   +IL+  LTK++AE++  +L E  I   Y+H++++T 
Sbjct: 428 IRPATGQVDDLLEEIRVRLAKTHEKILVISLTKKLAEEIAVFLNELEIPAAYLHADIETA 487

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER  I+ DLR GK DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS +SLIQ  GRAA
Sbjct: 488 ERTHILADLRTGKIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAA 547

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RNV+ KVI YAD  T +I+  + E  RRR+ Q+ +NKKHN+ P+ + + +     P    
Sbjct: 548 RNVHGKVIFYADKKTPAIEATLKEAARRRQIQIAYNKKHNLTPRPIIKAVFSNPIP---- 603

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
               T      Q+  LS+++ +  +K   K M LAA+   FE+AA+ RD I   K    
Sbjct: 604 --QGTKKDPFPQEQELSQEELEKLIKKNEKLMLLAAEEFRFEDAAKYRDLIHSYKKRLL 660


>gi|224534171|ref|ZP_03674751.1| excinuclease ABC, B subunit [Borrelia spielmanii A14S]
 gi|224514596|gb|EEF84910.1| excinuclease ABC, B subunit [Borrelia spielmanii A14S]
          Length = 662

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/658 (46%), Positives = 441/658 (67%), Gaps = 6/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 1   MIDFFLKSEYLPAGDQPKAIKEIEDSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINAEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQRISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R  + + R  F V GD +E++PS    + A+R+ +  ++I +I      + + +    +
Sbjct: 181 ERTLMNLERDKFSVKGDVVEVWPSSEHGEFAYRICLDFDEIVKIYRISSFSKKNLGATNS 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEML  T
Sbjct: 241 FTLFAKSYFVIPYQNVLEAIPKISYDLDLQCQYFKDNGKLVEAERLKQRVEYDLEMLRET 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS+YL+G   G  P  LF++ P+D LLFVDESHVT+PQ  GMY GD  RK  
Sbjct: 301 GFCSGIENYSKYLSGSTMG-RPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHSRKLN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  +GFRLP+ ++NRPL+++E++ L    I VSATPG  E ++   ++V+QIIRPTGLVD
Sbjct: 360 LVNFGFRLPAALENRPLKYDEFDALINQVIFVSATPGFEENDKS-SVVVDQIIRPTGLVD 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    ++ +Y+HSE+
Sbjct: 419 PEIVTRHSDGQMEDLYIEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVKAKYLHSEL 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER+E+I  LR  + DV+VGINLLREGLDIPE  LV ILDADK GFLRS TSLIQTIG
Sbjct: 479 DTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVVILDADKVGFLRSTTSLIQTIG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  VI+Y D I+ ++Q AI+ET RRR+ Q+++NKK+NI P+++ +KI  +++  
Sbjct: 539 RAARNSNGLVIMYYDKISVAMQEAIEETNRRRQIQIDYNKKNNIIPKTIVKKIQNILEKE 598

Query: 737 LLEDAATTNISIDAQQLSLSKK-KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L  +    NIS D +++   +K   K  +  L+ ++  A ++  FE+A  +RD+IK L
Sbjct: 599 L--NNKNKNISYDFEKIISGEKLSKKKLIDKLKFELEEAVNDERFEDAIVLRDKIKEL 654


>gi|224531992|ref|ZP_03672624.1| excinuclease ABC, B subunit [Borrelia valaisiana VS116]
 gi|224511457|gb|EEF81863.1| excinuclease ABC, B subunit [Borrelia valaisiana VS116]
          Length = 664

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/659 (46%), Positives = 440/659 (66%), Gaps = 8/659 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I  + RPA+
Sbjct: 1   MIDFFLKSEYLPAGDQPKAIKEIKNSILLGNKYQTLKGVTGSGKTFTIANIIRDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R  I + R  F + GD +EI+PS    + A+R+ +  ++I +I      + + +    +
Sbjct: 181 ERTLINLERDKFSIKGDIVEIWPSSEHGEFAYRICLDFDEIVKIYRITSFSKKNLGTTNS 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEML  T
Sbjct: 241 FTLFAKSYFVIPYKNVLEAIPKISHDLDLQCQYFKDNGKLVEAERLKQRVGYDLEMLRET 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS+YL+G   G  P  LF++  +D LLFVDESHVT+PQ  GMY GD+ RK  
Sbjct: 301 GFCSGIENYSKYLSGSTMG-RPYCLFDFFSKDYLLFVDESHVTLPQFRGMYNGDYSRKLN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  +GFRLP+ ++NRPL+++E++ L    + VSATPG  E E+   ++V+QIIRPTGLVD
Sbjct: 360 LVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPGFEENEKS-SVVVDQIIRPTGLVD 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    ++ +Y+HSE+
Sbjct: 419 PEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVTLGVKAKYLHSEL 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER+E+I  LR  + DV+VGINLLREGLDIPE  LV ILDADK GFLRS TSLIQTIG
Sbjct: 479 DTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVVILDADKVGFLRSTTSLIQTIG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  VI+Y D I+ ++  AI+ET RRR+ Q+++NKK+NI P+++ +KI  +++  
Sbjct: 539 RAARNSNGLVIMYYDKISVAMHEAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNILEKE 598

Query: 737 LLEDAATTNISIDAQQLSLSKKKG--KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L  +    NIS D ++ ++S K+   K  +  L+  +  A ++  FE+A  +RD+IK L
Sbjct: 599 L--NNKYKNISYDFEK-NISGKRLSKKKLINKLKFDLEEAVNDERFEDAIVLRDKIKEL 654


>gi|187918690|ref|YP_001884257.1| excinuclease ABC subunit B [Borrelia hermsii DAH]
 gi|119861538|gb|AAX17333.1| excinuclease ABC subunit B [Borrelia hermsii DAH]
          Length = 654

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/654 (47%), Positives = 436/654 (66%), Gaps = 6/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P+GDQP AI ++ + I    K Q L GVTGSGKTFT+A +I  ++RP+++++
Sbjct: 3   FCLKSDYSPAGDQPKAIREIKESILLDNKYQTLKGVTGSGKTFTIANIIRDLERPSLIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPE+YVP  D YIEKE++INE I+  R 
Sbjct: 63  HNKTLAAQLYREFKDFFPDNAVEYFVSYYDYYQPESYVPSKDLYIEKEATINEDIEIKRI 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
               SL  R D IVV++VS IY +GS E +        +G  +  KE+    VK QY+R 
Sbjct: 123 RTVTSLSRRRDVIVVATVSSIYALGSPEFFKSAAYAFFVGQKISIKEIADIFVKLQYERT 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            + +    F + GD IEI+PS+   D A+R+ +  ++I  I+   PLT + +   +   +
Sbjct: 183 LMNLEHDKFSIKGDLIEIWPSNEHGDFAYRIYLDFDNIIRINRISPLTKKILGITDEFTL 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +A S++V P   +  A+  I+ +L+M+ +  ++ G+L+EA+RL QR+ YD+EML  TGSC
Sbjct: 243 FAKSYFVIPYENILNALPKIQADLEMQYLYFKESGKLVEAERLRQRVEYDIEMLRETGSC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           Q IENYS+Y  G +    P  LF++ P+D LLF+DESHVT+PQ  GMY GD+ RK  L  
Sbjct: 303 QGIENYSKYF-GDSEMNRPYCLFDFFPKDYLLFIDESHVTLPQFRGMYNGDYSRKLNLVN 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS ++NRPL++ E+  L    + VSATPG  E E+   +IVEQIIRPTGLVDP +
Sbjct: 362 FGFRLPSALENRPLKYHEFEALMNQAVFVSATPGLEEREKS-SVIVEQIIRPTGLVDPEI 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            IR +  Q+ED+Y+E+        ++L+T LTK+MAEDLT+YL   +I+ RY+H+E   +
Sbjct: 421 IIRVSDGQMEDLYNEVQKRIALNEKVLITTLTKKMAEDLTDYLLTLDIKARYLHAEFNAI 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++II  LR  + DV+VGINLLREGLDIPE  LV ILDADK GFLRS  SLIQ IGRAA
Sbjct: 481 ERVDIITSLRRSEIDVIVGINLLREGLDIPEVSLVIILDADKVGFLRSTASLIQMIGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VI+Y D ++ ++Q AI+ET RRR+ Q+E+NKK+NI P+++ +K+  +++  L  
Sbjct: 541 RNSNGCVIMYYDQVSSAMQEAIEETNRRRDIQIEYNKKNNIVPKTIIKKVQNILEKELKN 600

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +    NI        LSKK     +  L+ ++  A  +  FE+A  +RD+IK L
Sbjct: 601 ETVDYNIKRIISDDKLSKKDL---IIKLKFKLEEAVSDERFEDAIFLRDKIKEL 651


>gi|187922139|ref|YP_001893781.1| excinuclease ABC subunit B [Burkholderia phytofirmans PsJN]
 gi|187713333|gb|ACD14557.1| excinuclease ABC, B subunit [Burkholderia phytofirmans PsJN]
          Length = 659

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/659 (47%), Positives = 436/659 (66%), Gaps = 18/659 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AIA+L++GI    K Q L G+TGSGKTFTMA VI  + RP +++A
Sbjct: 6   FILHSAYTPAGDQPEAIARLIEGIEEGAKHQTLKGITGSGKTFTMANVIHRLNRPTLMLA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK L AQLY E K FFP NAVE+FVSYYD++QPE Y+P +D +I+K+S+IN+ ++R+R 
Sbjct: 66  PNKTLTAQLYEEMKQFFPENAVEFFVSYYDFFQPEVYMPGSDRFIQKDSAINDHLERLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+SL+ER D IVV+SVS IYG+G    Y ++ + L  G S   +EL+  LV+ QY+R 
Sbjct: 126 STTKSLIERRDVIVVASVSSIYGLGDPNGYRELQIALSRGISFRPRELIRRLVRLQYERV 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + RGTFRV GD+++IFP+  E  A RV +  + ++ +    P TG ++  ++   + 
Sbjct: 186 ERTLKRGTFRVRGDAVDIFPADSEYRAVRVELLDDSVQSVHWIDPATGAQLGEIDHYLVS 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + + TPR  +N+A   I  E++ R+ EL  E RL+EA RL +RIT D+EM+   G C 
Sbjct: 246 PKTLFATPRNRVNSATIKILAEMEARVAELNSENRLVEADRLYERITGDVEMMRELGYCP 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENYS YL GR+P  PP TL +Y+P D LLFVDESHV +PQIS MY+GD  RK TL +Y
Sbjct: 306 GMENYSCYLNGRDPALPPNTLLDYLPTDGLLFVDESHVMVPQISAMYKGDQSRKDTLIDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPL FEE+  ++P TI VSATPG++EL   +G  V QIIRPTGL+DP VE
Sbjct: 366 GFRLPSSKNNRPLSFEEFEKVKPQTIFVSATPGNYELAISKGRFVSQIIRPTGLLDPEVE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R+    ++D+  EI    +   R+L+T LTKR AE+L +++ ER IR RY+H+++KT +
Sbjct: 426 VRTTDGCIDDLLVEIKKCVKNKNRVLVTTLTKRAAEELNDFMTERGIRSRYLHADIKTED 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           RIEII  LR G+FDVL+GI+LLREGLDIPE  LVAILDAD  GFLRS  +LIQ IGR AR
Sbjct: 486 RIEIINGLREGEFDVLIGISLLREGLDIPEAALVAILDADHAGFLRSAQALIQMIGRVAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N   + ILYAD IT +++ A+DET  RR+KQ+E N+++ I P S   K+    + +  E+
Sbjct: 546 NEEGRAILYADGITPAMKQAMDETGSRRKKQIEFNEENGIVPASSVRKLAS--EHVEPEE 603

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF-----EEAAR-IRDEIKRL 793
            A+ +     + LS    +     + L          L F     E+     RD++  L
Sbjct: 604 NASVHSVAFCKNLSDLCDQITKKEERL----------LEFTDAGDEKKIEDTRDQLNGL 652


>gi|224532435|ref|ZP_03673061.1| excinuclease ABC, B subunit [Borrelia burgdorferi WI91-23]
 gi|224512607|gb|EEF82982.1| excinuclease ABC, B subunit [Borrelia burgdorferi WI91-23]
          Length = 668

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/659 (46%), Positives = 441/659 (66%), Gaps = 8/659 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 1   MIDFFLKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R  + + R  F + GD +EI+PS    + A+R+ +  ++I EI      + + +    +
Sbjct: 181 ERTLMTLERDKFSIKGDIVEIWPSSEHGEFAYRICLDFDEIVEIYRVSSFSKKNLGATNS 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEML  T
Sbjct: 241 FTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDSGKLVEAERLKQRVEYDLEMLRET 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS+YL+G    E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  RK  
Sbjct: 301 GFCSGIENYSKYLSGSTM-ERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHSRKLN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  +GFRLP+ ++NRPL+++E+  L    + VSATPG  E E+   ++V+QIIRPTGLVD
Sbjct: 360 LVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPTGLVD 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+HSE+
Sbjct: 419 PEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYLHSEL 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLIQTIG
Sbjct: 479 DTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLIQTIG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++NKK+NI P+++ +KI  +++  
Sbjct: 539 RAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNILEKE 598

Query: 737 LLEDAATTNISIDAQQLSLSKKKG--KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L  +    N+  D +++ +S ++   K  +  L+  +  A ++  FE+A  +RD+IK L
Sbjct: 599 L--NNKNKNVGYDFEKI-ISGERLSKKKLIDKLKFDLEEAVNDERFEDAIVLRDKIKEL 654


>gi|226320883|ref|ZP_03796435.1| excinuclease ABC, B subunit [Borrelia burgdorferi 29805]
 gi|226233749|gb|EEH32478.1| excinuclease ABC, B subunit [Borrelia burgdorferi 29805]
          Length = 668

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/659 (46%), Positives = 441/659 (66%), Gaps = 8/659 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 1   MIDFFLKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R  + + R  F + GD +EI+PS    + A+R+ +  ++I EI      + + +    +
Sbjct: 181 ERTLMNLERDKFSIKGDIVEIWPSSEHGEFAYRICLDFDEIVEIYRVSSFSKKNLGATNS 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++A S++V P   +  A+  I  +L ++    +  GRL+EA+RL+QR+ YDLEML  T
Sbjct: 241 FTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGRLVEAERLKQRVEYDLEMLRET 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS+YL+G    E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  RK  
Sbjct: 301 GFCSGIENYSKYLSGSTM-ERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHSRKLN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  +GFRLP+ ++NRPL+++E+  L    + VSATPG  E E+   ++V+QIIRPTGLVD
Sbjct: 360 LVNFGFRLPAALENRPLKYDEFESLINQVVFVSATPGVEENEKS-SVVVDQIIRPTGLVD 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+HSE+
Sbjct: 419 PEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYLHSEL 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLIQTIG
Sbjct: 479 DTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLIQTIG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI  +++  
Sbjct: 539 RAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNILEKE 598

Query: 737 LLEDAATTNISIDAQQLSLSKKKG--KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L  +    N+  D +++ +S ++   K  +  L+  +  A ++  FE+A  +RD+IK L
Sbjct: 599 L--NNKNKNVGYDFEKI-ISGERLSKKKLIDKLKFDLEEAVNDERFEDAIVLRDKIKEL 654


>gi|219684941|ref|ZP_03539882.1| excinuclease ABC, B subunit [Borrelia garinii PBr]
 gi|219671679|gb|EED28735.1| excinuclease ABC, B subunit [Borrelia garinii PBr]
          Length = 664

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/659 (46%), Positives = 437/659 (66%), Gaps = 8/659 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + ++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 1   MIDFFLNSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R  + + R  F + G+ IEI+PS    + A+R+ +  ++I EI      + + +    +
Sbjct: 181 ERTLMNLERDKFSIKGNIIEIWPSSEHGEFAYRICLDFDEIVEIYRISSFSKKNLGTTNS 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEML  T
Sbjct: 241 FTLFAKSYFVIPYKNVLEAIPKISYDLNLQCQYFKDNGKLVEAERLKQRVEYDLEMLRET 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS+YL+G   G  P  LF++ P+D LLFVDESHVT+PQ  GMY GD+ RK  
Sbjct: 301 GFCSGIENYSKYLSGSEMG-RPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDYSRKLN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  +GFRLP+ ++NRPL+++E++ L    + VSATPG  E  +   ++V+QIIRPTGLVD
Sbjct: 360 LVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPGLEENLKS-SVVVDQIIRPTGLVD 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+HSE+
Sbjct: 419 PEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVSLGVRAKYLHSEL 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLIQTIG
Sbjct: 479 DTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLIQTIG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  VI+Y D I+ ++Q AI+ET RRR+ Q+++NKK+NI P+++ +KI  +++  
Sbjct: 539 RAARNANGLVIMYYDRISVAMQEAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNILEKE 598

Query: 737 LLEDAATTNISIDA--QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L       N  ++       LSKK     +  L+ ++  A ++  FE+A  +RD+IK L
Sbjct: 599 LNNKNKNINYDLEKIISGERLSKK---KLINKLKFELEEAVNDERFEDAIVLRDKIKEL 654


>gi|15595181|ref|NP_212970.1| excinuclease ABC subunit B [Borrelia burgdorferi B31]
 gi|8134783|sp|O51776|UVRB_BORBU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|2688782|gb|AAC67185.1| excinuclease ABC, subunit B (uvrB) [Borrelia burgdorferi B31]
          Length = 673

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/661 (46%), Positives = 442/661 (66%), Gaps = 8/661 (1%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           K +  F ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RP
Sbjct: 4   KLMIDFFLKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRP 63

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
           A+V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I
Sbjct: 64  ALVVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEI 123

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           +  R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+ 
Sbjct: 124 EIKRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVEL 183

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            Y+R  + + R  F + GD +EI+PS    + A+R+ +  ++I EI      + + +   
Sbjct: 184 YYERTLMNLERDKFSIKGDIVEIWPSSEHGEFAYRICLDFDEIVEIYRVSSFSKKNLGAT 243

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
            +  ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEML 
Sbjct: 244 NSFTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGKLVEAERLKQRVEYDLEMLR 303

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            TG C  IENYS+YL+G    E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  RK
Sbjct: 304 ETGFCSGIENYSKYLSGSTM-ERPYCLFDFFPKDXLLFVDESHVTLPQFRGMYNGDHSRK 362

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L  +GFRLP+ ++NRPL+++E+  L    + VSATPG  E E+   ++V+QIIRPTGL
Sbjct: 363 LNLVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           VDP +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+HS
Sbjct: 422 VDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYLHS 481

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           E+ TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLIQT
Sbjct: 482 ELDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLIQT 541

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++NKK+NI P+++ +KI  +++
Sbjct: 542 IGRAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNILE 601

Query: 735 PILLEDAATTNISIDAQQLSLSKKKG--KAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             L  +    N+  D +++ +S ++   K  +  L+  +  A ++  FE+A  +RD+IK 
Sbjct: 602 KEL--NNKNKNVGYDFEKI-ISGERLSKKKLIDKLKFDLEEAVNDERFEDAIVLRDKIKE 658

Query: 793 L 793
           L
Sbjct: 659 L 659


>gi|225549368|ref|ZP_03770340.1| excinuclease ABC, B subunit [Borrelia burgdorferi 94a]
 gi|225369996|gb|EEG99437.1| excinuclease ABC, B subunit [Borrelia burgdorferi 94a]
          Length = 668

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/659 (46%), Positives = 441/659 (66%), Gaps = 8/659 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 1   MIDFFLKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R  + + R  F + GD +EI+PS    + A+R+ +  ++I EI      + + +    +
Sbjct: 181 ERTLMTLERDKFSIKGDIVEIWPSSEHGEFAYRICLDFDEIVEIYRVSSFSKKNLGATNS 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++A S++V P   +  A+  I  +L ++    +  GRL+EA+RL+QR+ YDLEML  T
Sbjct: 241 FTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGRLVEAERLKQRVEYDLEMLRET 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS+YL+G    E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  RK  
Sbjct: 301 GFCSGIENYSKYLSGSTM-ERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHSRKLN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  +GFRLP+ ++NRPL+++E+  L    + VSATPG  E E+   ++V+QIIRPTGLVD
Sbjct: 360 LVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPTGLVD 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+HSE+
Sbjct: 419 PEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYLHSEL 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLIQTIG
Sbjct: 479 DTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLIQTIG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI  +++  
Sbjct: 539 RAARNSNGFVIMYYDKISLAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNILEKE 598

Query: 737 LLEDAATTNISIDAQQLSLSKKKG--KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L  +    N+  D +++ +S ++   K  +  L+  +  A ++  FE+A  +RD+IK L
Sbjct: 599 L--NNKNKNVGYDFEKI-ISGERLSKKKLIDKLKFDLEEAVNDERFEDAIVLRDKIKEL 654


>gi|312149447|gb|ADQ29518.1| excinuclease ABC, B subunit [Borrelia burgdorferi N40]
          Length = 668

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/659 (46%), Positives = 441/659 (66%), Gaps = 8/659 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 1   MIDFFLKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R  + + R  F + GD +EI+PS    + A+R+ +  ++I EI      + + +    +
Sbjct: 181 ERTLMTLERDKFSIKGDIVEIWPSSEHGEFAYRICLDFDEIVEIYRVSSFSKKNLGATNS 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++A S++V P   +  A+  I  +L ++    +  GRL+EA+RL+QR+ YDLEML  T
Sbjct: 241 FTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGRLVEAERLKQRVEYDLEMLRET 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS+YL+G    E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  RK  
Sbjct: 301 GFCSGIENYSKYLSGSTM-ERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHSRKLN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  +GFRLP+ ++NRPL+++E+  L    + VSATPG  E E+   ++V+QIIRPTGLVD
Sbjct: 360 LVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPTGLVD 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+HSE+
Sbjct: 419 PEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYLHSEL 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLIQTIG
Sbjct: 479 DTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLIQTIG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++NKK+NI P+++ +KI  +++  
Sbjct: 539 RAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNILEKE 598

Query: 737 LLEDAATTNISIDAQQLSLSKKKG--KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L  +    N+  D +++ +S ++   K  +  L+  +  A ++  FE+A  +RD+IK L
Sbjct: 599 L--NNKNKNVGYDFEKI-ISGERLSKKKLIDKLKFDLEEAVNDERFEDAIVLRDKIKEL 654


>gi|218249758|ref|YP_002375332.1| excinuclease ABC, B subunit [Borrelia burgdorferi ZS7]
 gi|226695479|sp|B7J0S9|UVRB_BORBZ RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|218164946|gb|ACK75007.1| excinuclease ABC, B subunit [Borrelia burgdorferi ZS7]
          Length = 668

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/658 (46%), Positives = 440/658 (66%), Gaps = 6/658 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 1   MIDFFLKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R  + + R  F + GD +EI+PS    + A+R+ +  ++I EI      + +K+    +
Sbjct: 181 ERTLMNLERDKFSIKGDIVEIWPSSEHGEFAYRICLDFDEIVEIYRVSSFSKKKLGATNS 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++A S++V P   +  A+  I  +L ++    +  GRL+EA+RL+QR+ YDLEML  T
Sbjct: 241 FTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGRLVEAERLKQRVEYDLEMLRET 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS+YL+G    E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  RK  
Sbjct: 301 GFCSGIENYSKYLSGSTM-ERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHSRKLN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  +GFRLP+ ++NRPL+++E+  L    + VSATPG  E E+   ++V+QIIRPTGLVD
Sbjct: 360 LVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPTGLVD 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+HSE+
Sbjct: 419 PEIITRRSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYLHSEL 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLIQTIG
Sbjct: 479 DTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLIQTIG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI  +++  
Sbjct: 539 RAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNILEKE 598

Query: 737 LLEDAATTNISIDAQQLSLSKK-KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L  +    N+  D +++   ++   K  +  L+  +  A ++  FE+A  +RD+IK L
Sbjct: 599 L--NNKNKNVGYDFEKIISDERLSKKKLIDKLKFDLEEAVNDERFEDAIVLRDKIKEL 654


>gi|119953614|ref|YP_945824.1| excinuclease ABC subunit B [Borrelia turicatae 91E135]
 gi|119862385|gb|AAX18153.1| excinuclease ABC subunit B [Borrelia turicatae 91E135]
          Length = 653

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/654 (46%), Positives = 432/654 (66%), Gaps = 6/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P+GDQ  AI ++ + I    K Q L GVTGSGKTFT+A +I  ++RPA++++
Sbjct: 3   FCLRSDYSPAGDQSKAIREIEESILLDNKYQTLKGVTGSGKTFTIANIIRNLERPALIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPE+YVP  D YIEKE++INE I+  R 
Sbjct: 63  HNKTLAAQLYREFKDFFPDNAVEYFVSYYDYYQPESYVPSKDLYIEKEATINEDIEIKRI 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
               SL  R D IVV++VS IY +GS E +        +G  +  KE+    VK QY+R 
Sbjct: 123 RTVTSLSRRRDVIVVATVSSIYALGSPEFFKNAAHAFFVGQKISIKEIADIFVKLQYERT 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            + +    F + GD IE++PS+   D A+++ +  ++I  IS   PLT + +   +   +
Sbjct: 183 LMNLEHDKFSIKGDVIEVWPSNEHGDFAYKIYLDFDEIVRISRINPLTKKILGVTDEFTL 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +A S++V P   +  A+  I+ +L+++    ++ G+ +EA+RL+QR+ YD+EML  TGSC
Sbjct: 243 FAKSYFVIPYENILDALSKIQVDLEIQYHSFKENGKFVEAERLKQRVEYDIEMLRETGSC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           Q IENYS+Y +     + P  LF++ P+D LLF+DESHVT+PQ  GMY GD+ RK  L  
Sbjct: 303 QGIENYSKYFSDSEM-DRPYCLFDFFPKDYLLFIDESHVTLPQFRGMYNGDYSRKLNLVN 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS + NRPL++ E+  L    + VSATPG  E E+   +I EQIIRPTGL+DP +
Sbjct: 362 FGFRLPSALANRPLKYHEFESLINQVVFVSATPGLEECEKS-SVIAEQIIRPTGLIDPEI 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R +  Q+ED+Y+EI        ++L+T LTK+MAEDLT+YL   +I+ RY+H+E   +
Sbjct: 421 ILRVSDGQMEDLYNEIQKRVALNEKVLITTLTKKMAEDLTDYLLSLDIKARYLHAEFNAI 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER++II  LR  + DV+VGINLLREGLDIPE  LV ILDADK GFLRS TSLIQ IGRAA
Sbjct: 481 ERVDIITSLRKSEIDVIVGINLLREGLDIPEVSLVIILDADKVGFLRSTTSLIQMIGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN N  VI+Y D ++ +++ AIDET RRR  Q+E+NKK+NI P+++ +K+  +++  L  
Sbjct: 541 RNSNGCVIMYYDHVSCAMREAIDETNRRRNIQIEYNKKNNIVPRTIIKKVQNILEKELKN 600

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +    +I        LSKK     +  L+ ++  A  +  FE+A  +RD+I+ L
Sbjct: 601 ETVDYDIGKIISDDKLSKKDL---IIKLKFKLEEAVCDERFEDAIFLRDKIREL 651


>gi|312148059|gb|ADQ30718.1| excinuclease ABC, B subunit [Borrelia burgdorferi JD1]
          Length = 668

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/659 (46%), Positives = 440/659 (66%), Gaps = 8/659 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 1   MIDFFLKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R  + + R  F + GD +EI+PS    + A+R+ +  ++I EI      + + +    +
Sbjct: 181 ERTLMTLERDKFSIKGDIVEIWPSSEHGEFAYRICLDFDEIVEIYRVSSFSKKNLGATNS 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEML  T
Sbjct: 241 FTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDSGKLVEAERLKQRVEYDLEMLRET 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS+YL+G    E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  RK  
Sbjct: 301 GFCSGIENYSKYLSGSTM-ERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHSRKLN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  +GFRLP+ ++NRPL+++E+  L    + VSATPG  E E+   ++V+QIIRPTGLVD
Sbjct: 360 LVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPTGLVD 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+HSE+
Sbjct: 419 PEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYLHSEL 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLIQTIG
Sbjct: 479 DTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLIQTIG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  VI+Y D I+ +++ AI ET RRR+ Q+++N+K+NI P+++ +KI  +++  
Sbjct: 539 RAARNSNGLVIMYYDKISLAMREAIGETNRRRQIQIDYNEKNNITPKTIVKKIQNILEKE 598

Query: 737 LLEDAATTNISIDAQQLSLSKKKG--KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L  +    N+  D +++ +S ++   K  +  L+  +  A ++  FE+A  +RD+IK L
Sbjct: 599 L--NNKNKNVGYDFEKI-ISGERLSKKKLIDKLKFDLEEAVNDERFEDAIVLRDKIKEL 654


>gi|225551693|ref|ZP_03772637.1| excinuclease ABC, B subunit [Borrelia sp. SV1]
 gi|225371720|gb|EEH01146.1| excinuclease ABC, B subunit [Borrelia sp. SV1]
          Length = 668

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/659 (46%), Positives = 443/659 (67%), Gaps = 8/659 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 1   MIDFFLKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  +E+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIREISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R  + + R  F + GD +EI+PS    + A+R+ +  ++I EI      + + +    +
Sbjct: 181 ERTLMNLERDKFSIKGDVVEIWPSSEHGEFAYRICLDFDEIVEIYRVSSFSKKNLGATNS 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEML  T
Sbjct: 241 FTLFAKSYFVIPYKNVLEAIPKISHDLSLQCQYFKDNGKLVEAERLKQRVEYDLEMLRET 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS+YL+G    E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  RK+ 
Sbjct: 301 GFCSGIENYSKYLSGSTM-ERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHSRKSN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  +GFRLP+ ++NRPL+++E++ L    + VSATPG  E E+   ++V+QIIRPTGLVD
Sbjct: 360 LVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPGVEENEKS-SVVVDQIIRPTGLVD 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+HSE+
Sbjct: 419 PEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYLHSEL 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLIQTIG
Sbjct: 479 DTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLIQTIG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI  +++  
Sbjct: 539 RAARNSNGLVIMYYDKISVAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNILEKE 598

Query: 737 LLEDAATTNISIDAQQLSLSKKKG--KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L  +    N+  D +++ +S ++   K  +  L+  +  A ++  FE+A  +RD+IK L
Sbjct: 599 L--NNKNKNVGYDFEKI-ISGERLSKKKLIDKLKFDLEEAVNDERFEDAIVLRDKIKEL 654


>gi|221217593|ref|ZP_03589062.1| excinuclease ABC, B subunit [Borrelia burgdorferi 72a]
 gi|221192539|gb|EEE18757.1| excinuclease ABC, B subunit [Borrelia burgdorferi 72a]
          Length = 668

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/659 (46%), Positives = 441/659 (66%), Gaps = 8/659 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 1   MIDFFLKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R  + + R  F + GD +EI+PS    + A+R+ +  ++I EI      + + +    +
Sbjct: 181 ERTLMTLERDKFSIKGDIVEIWPSSEHGEFAYRICLDFDEIVEIYRVSSFSKKNLGATNS 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEML  T
Sbjct: 241 FTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKNNGKLVEAERLKQRVEYDLEMLRET 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS+YL+G    E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  RK  
Sbjct: 301 GFCSGIENYSKYLSGSTM-ERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHSRKLN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  +GFRLP+ ++NRPL+++E+  L    + VSATPG  E E+   ++V+QIIRPTGLVD
Sbjct: 360 LVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPTGLVD 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+HSE+
Sbjct: 419 PEIITRRSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYLHSEL 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLIQTIG
Sbjct: 479 DTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLIQTIG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI  +++  
Sbjct: 539 RAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNILEKE 598

Query: 737 LLEDAATTNISIDAQQLSLSKKKG--KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L  +    N+  D +++ +S ++   K  +  L+  +  A ++  FE+A  +RD+IK L
Sbjct: 599 L--NNKNKNVGYDFEKI-ISGERLSKKKLIDKLKFDLEEAVNDERFEDAIVLRDKIKEL 654


>gi|195941954|ref|ZP_03087336.1| excinuclease ABC subunit B [Borrelia burgdorferi 80a]
 gi|223889305|ref|ZP_03623892.1| excinuclease ABC, B subunit [Borrelia burgdorferi 64b]
 gi|224534121|ref|ZP_03674703.1| excinuclease ABC, B subunit [Borrelia burgdorferi CA-11.2a]
 gi|225550272|ref|ZP_03771231.1| excinuclease ABC, B subunit [Borrelia burgdorferi 118a]
 gi|226321300|ref|ZP_03796828.1| excinuclease ABC, B subunit [Borrelia burgdorferi Bol26]
 gi|223885226|gb|EEF56329.1| excinuclease ABC, B subunit [Borrelia burgdorferi 64b]
 gi|224512743|gb|EEF83112.1| excinuclease ABC, B subunit [Borrelia burgdorferi CA-11.2a]
 gi|225369140|gb|EEG98594.1| excinuclease ABC, B subunit [Borrelia burgdorferi 118a]
 gi|226233332|gb|EEH32083.1| excinuclease ABC, B subunit [Borrelia burgdorferi Bol26]
          Length = 668

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/659 (46%), Positives = 441/659 (66%), Gaps = 8/659 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 1   MIDFFLKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R  + + R  F + GD +EI+PS    + A+R+ +  ++I EI      + + +    +
Sbjct: 181 ERTLMNLERDKFSIKGDIVEIWPSSEHGEFAYRICLDFDEIVEIYRVSSFSKKNLGATNS 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++A S++V P   +  A+  I  +L ++    +  GRL+EA+RL+QR+ YDLEML  T
Sbjct: 241 FTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGRLVEAERLKQRVEYDLEMLRET 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS+YL+G    E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  RK  
Sbjct: 301 GFCSGIENYSKYLSGSTM-ERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHSRKLN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  +GFRLP+ ++NRPL+++E+  L    + VSATPG  E E+   ++V+QIIRPTGLVD
Sbjct: 360 LVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPTGLVD 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+HSE+
Sbjct: 419 PEIITRRSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYLHSEL 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLIQTIG
Sbjct: 479 DTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLIQTIG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI  +++  
Sbjct: 539 RAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNILEKE 598

Query: 737 LLEDAATTNISIDAQQLSLSKKKG--KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L  +    N+  D +++ +S ++   K  +  L+  +  A ++  FE+A  +RD+IK L
Sbjct: 599 L--NNKNKNVGYDFEKI-ISGERLSKKKLIDKLKFDLEEAVNDERFEDAIVLRDKIKEL 654


>gi|216264228|ref|ZP_03436220.1| excinuclease ABC, B subunit [Borrelia burgdorferi 156a]
 gi|215980701|gb|EEC21508.1| excinuclease ABC, B subunit [Borrelia burgdorferi 156a]
          Length = 668

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/659 (46%), Positives = 441/659 (66%), Gaps = 8/659 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F ++++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 1   MIDFFLKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R  + + R  F + GD +EI+PS    + A+R+ +  ++I EI      + + +    +
Sbjct: 181 ERTLMTLERDKFSIKGDIVEIWPSSEHGEFAYRICLDFDEIVEIYRVSSFSKKNLGATNS 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++A S++V P   +  A+  I  +L ++    +  GRL+EA+RL+QR+ YDLEML  T
Sbjct: 241 FTLFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGRLVEAERLKQRVEYDLEMLRET 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS+YL+G    E P  LF++ P+D LLFVDESHVT+PQ  GMY GD  RK  
Sbjct: 301 GFCSGIENYSKYLSGSTM-ERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDHSRKLN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  +GFRLP+ ++NRPL+++E+  L    + VSATPG  E E+   ++V+QIIRPTGLVD
Sbjct: 360 LVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVEENEKS-SVVVDQIIRPTGLVD 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+HSE+
Sbjct: 419 PEIITRRSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYLHSEL 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLIQTIG
Sbjct: 479 DTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLIQTIG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  VI+Y D I+ +++ AI+ET RRR+ Q+++N+K+NI P+++ +KI  +++  
Sbjct: 539 RAARNSNGLVIMYYDKISLAMREAIEETNRRRQIQIDYNEKNNITPKTIVKKIQNILEKE 598

Query: 737 LLEDAATTNISIDAQQLSLSKKKG--KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L  +    N+  D +++ +S ++   K  +  L+  +  A ++  FE+A  +RD+IK L
Sbjct: 599 L--NNKNKNVGYDFEKI-ISGERLSKKKLIDKLKFDLEEAVNDERFEDAIVLRDKIKEL 654


>gi|219685788|ref|ZP_03540598.1| excinuclease ABC, B subunit [Borrelia garinii Far04]
 gi|219672673|gb|EED29702.1| excinuclease ABC, B subunit [Borrelia garinii Far04]
          Length = 664

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/658 (46%), Positives = 436/658 (66%), Gaps = 8/658 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + ++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 1   MIDFFLNSEYFPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL++R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLVKRRDVIVVATVSSIYALGSPDFFKKSAREFFVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R  + + R  F + G+ IEI+PS    + A+R+ +  ++I EI      + + +    +
Sbjct: 181 ERTLMNLERDKFSIKGNIIEIWPSSEHGEFAYRICLDFDEIVEIYRISSFSKKNLGTTNS 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEML  T
Sbjct: 241 FTLFAKSYFVIPYKNVLEAIPKISYDLNLQCQYFKDNGKLVEAERLKQRVEYDLEMLRET 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS+YL+G   G  P  LF++ P+D LLFVDESHVT+PQ  GMY GD+ RK  
Sbjct: 301 GFCSGIENYSKYLSGSEMG-RPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDYSRKLN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  +GFRLP+ ++NRPL+++E++ L    + VSATPG  E  +   ++V+QIIRPTGLVD
Sbjct: 360 LVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPGLEENFKS-SVVVDQIIRPTGLVD 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +  +Y+HSE+
Sbjct: 419 PEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVSLGVGAKYLHSEL 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLIQTIG
Sbjct: 479 DTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLIQTIG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  VI+Y D I+ ++Q AI+ET RRR+ Q+++NKK+NI P+++ +KI  +++  
Sbjct: 539 RAARNANGLVIMYYDRISVAMQEAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNILEKE 598

Query: 737 LLEDAATTNISIDA--QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
           L       N  ++       LSKK     +  L+ ++  A ++  FE+A  +RD+IK 
Sbjct: 599 LNNKNKNINYDLEKIISGERLSKK---KLINKLKFELEEAVNDERFEDAIVLRDKIKE 653


>gi|51599087|ref|YP_073275.1| excinuclease ABC subunit B [Borrelia garinii PBi]
 gi|81825609|sp|Q65ZT8|UVRB_BORGA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|51573658|gb|AAU07683.1| excinuclease ABC, subunit B [Borrelia garinii PBi]
          Length = 664

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/659 (46%), Positives = 439/659 (66%), Gaps = 8/659 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F + ++Y P+GDQP AI ++   I    K Q L GVTGSGKTFT+A +I+ + RPA+
Sbjct: 1   MIDFFLNSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPAL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LAAQLY EFK+FFP+NAVEYFVSYYDYYQPE+YVP  D +IEKE++IN +I+ 
Sbjct: 61  VVSHNKTLAAQLYREFKDFFPNNAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
            R     SL +R D IVV++VS IY +GS + + +   +  +G  +  KE+    V+  Y
Sbjct: 121 KRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFSVGQKISIKEISDIFVELYY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R  + + R  F + G+ IEI+PS    + A+R+ +  ++I EI      + + +    +
Sbjct: 181 ERTLMNLERDKFSIKGNIIEIWPSSEHGEFAYRICLDFDEIVEIYRISSFSKKNLGTTNS 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             ++A S++V P   +  A+  I  +L ++    +  G+L+EA+RL+QR+ YDLEML  T
Sbjct: 241 FTLFAKSYFVIPYKNVLEAIPKISYDLNLQCQYFKDNGKLVEAERLKQRVEYDLEMLRET 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G C  IENYS+YL+G    E P  LF++ P+D LLFVDESHVT+PQ  GMY GD+ RK  
Sbjct: 301 GFCSGIENYSKYLSGSEM-ERPYCLFDFFPKDYLLFVDESHVTLPQFRGMYNGDYSRKLN 359

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L  +GFRLP+ ++NRPL+++E++ L    + VSATPG  E  + + ++V+QIIRPTGLVD
Sbjct: 360 LVNFGFRLPAALENRPLKYDEFDALINQVVFVSATPGLEENLKSR-VVVDQIIRPTGLVD 418

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +  R +  Q+ED+Y EI        R+L+T LTK+M+EDLTEYL    +R +Y+HSE+
Sbjct: 419 PEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVSLGVRAKYLHSEL 478

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            TLER+E+I  LR  + DV+VGINLLREGLDIPE  LVAILDADK GFLRS TSLIQTIG
Sbjct: 479 DTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLIQTIG 538

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N  VI+Y DTI+ +++ AI+ET RRR+ Q+++NKK+NI P+++ +KI  +++  
Sbjct: 539 RAARNSNGLVIMYYDTISVAMREAIEETNRRRQIQVDYNKKNNITPKTIVKKIQNILEKE 598

Query: 737 LLEDAATTNISIDA--QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L       N  ++       LSKK     +  L+ ++  A ++  FE+A  +RD+IK L
Sbjct: 599 LNNKNKNINYDLEKIISGERLSKK---KLINKLKFELEEAVNDERFEDAIVLRDKIKEL 654


>gi|193216493|ref|YP_001999735.1| excinuclease ABC subunit B [Mycoplasma arthritidis 158L3-1]
 gi|8134791|sp|Q9ZB21|UVB2_MYCPU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238692470|sp|B3PLX9|UVRB_MYCA5 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|4097425|gb|AAD00088.1| UvrB exinuclease subunit B [Mycoplasma pulmonis]
 gi|193001816|gb|ACF07031.1| excinuclease ABC subunit B [Mycoplasma arthritidis 158L3-1]
          Length = 660

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/654 (45%), Positives = 425/654 (64%), Gaps = 5/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP AI  L+ GI  +++ Q+LLGVTGSGKTFT+A VI  + RP+++++
Sbjct: 5   FVLHSPFAPSGDQPEAIKALVDGIDEKKEHQVLLGVTGSGKTFTIANVIAQLNRPSLIIS 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA+QLYSE K  FP N VEYFVSY+D+Y+PEAY+P++D YIEK S  N++++ MR 
Sbjct: 65  HNKTLASQLYSELKALFPDNRVEYFVSYFDFYKPEAYIPKSDLYIEKTSKNNKELEAMRM 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA  +L  R D IVV+SV+ IYG  + + Y Q    +++G  +++K LL  L +  Y+R 
Sbjct: 125 SAINALSIRKDTIVVASVAAIYGESNPKHYRQNFFPIEVGMQIDRKSLLLKLSQIGYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
            + + +G F V GDSIEI P ++ D   R+ MFGN+IE I+   PL+     + + + ++
Sbjct: 185 RMELNKGQFDVKGDSIEICPGYVSDTNIRIDMFGNEIEAITLIDPLSKNVEGSRKNMTLF 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y     T+   +  IK+EL  R+   +   +LLEAQR++ R   DL+ L   G   
Sbjct: 245 PATTYTVHENTIQNTVDLIKQELSERIEYFKSHDKLLEAQRIKDRTLNDLDSLLEFGYTS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL GR PG+ P TLF+Y+P+DS++F+DESH+ IPQ+ GM+ GD  RK +L EY
Sbjct: 305 GIENYSRYLDGRAPGQRPYTLFDYLPDDSVIFIDESHLMIPQLHGMHNGDRARKLSLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+   +   I +SATPG +EL+   G IV Q IRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFEEFAEFKFPKIYISATPGDYELDLTHGEIVTQYIRPTGLLDPIIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I S   Q+ED+YD +     +  R L+   TK+ AE+L+ +L E+ I+  Y+H   K  E
Sbjct: 425 IHSRDNQIEDIYDHLKEQIAKKERTLILTTTKKNAEELSLFLQEKKIKSAYIHDRFKIFE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R EI++ LR+GKFDV+VGINLL+EG+D+PE  L+ +L+AD  G +R   SLIQ +GRAAR
Sbjct: 485 RNEILKGLRMGKFDVVVGINLLKEGIDLPEVSLICVLNADSTGLMRDTRSLIQIVGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-DPILLE 739
           N + KVI YA+ IT S++  I++   +R+ Q E+N+KHNI P+++ + I   I + IL E
Sbjct: 545 NDHGKVIFYANEITSSMRECIEDNLFKRKIQSEYNEKHNIIPKTIVKPIAPPIQNGILSE 604

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           D +      D  Q+  +KK     +  + ++M   A    FEEA  IRD +  +
Sbjct: 605 DHSKYYGEKDLSQMKHNKK----FIDQMVRKMTQLAKANKFEEAIEIRDYLIEI 654


>gi|304373424|ref|YP_003856633.1| Excinuclease ABC subunit B [Mycoplasma hyorhinis HUB-1]
 gi|304309615|gb|ADM22095.1| Excinuclease ABC subunit B [Mycoplasma hyorhinis HUB-1]
          Length = 668

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/658 (42%), Positives = 415/658 (63%), Gaps = 4/658 (0%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ +++ P+GDQP AI  L+ GI + +  Q+LLGVTGSGKTFTMA VI  + RP ++
Sbjct: 15  KMFKLVSNFQPTGDQPKAIKALVDGIKNHKDHQVLLGVTGSGKTFTMANVIAQLNRPVLI 74

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           ++  K LA+QLY+EFK FFP N VEYFVSY+D+Y+PEAY+P  D YI+K S  N  ++ M
Sbjct: 75  LSHTKTLASQLYTEFKEFFPENRVEYFVSYFDFYRPEAYLPAKDVYIDKTSQTNWDLEAM 134

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SA  +L  R D IVVSSV+ IYG  + + Y Q  + L++   ++  +    LVK QY 
Sbjct: 135 RMSALNALTLRRDTIVVSSVAAIYGSYNPKEYKQHFLNLELNQELKPSDFAIELVKIQYS 194

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R  +  + G+F   GD   I P+  +    ++  FGN IE+IS+ +P+  + I+   +  
Sbjct: 195 RNQVDTVPGSFSAKGDVFIISPAWTDKYLIKIEFFGNIIEKISKIHPVDKKIIQTFTSYT 254

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+  S Y     T+ TA+K I  EL  +L   EKEG+LLE QRL +R+  D++ L   G 
Sbjct: 255 IFPASAYTLSPNTIQTAIKTILTELDFQLNYFEKEGKLLEKQRLNERVLNDVDSLNNFGF 314

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENY+R++  R  GE P +L +Y+PED+L+F+DESH  I Q++ MY+GD  RK +L 
Sbjct: 315 CKGIENYARHIDQREAGEQPYSLLDYLPEDALIFIDESHEMITQLNRMYKGDRSRKLSLV 374

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
            YGFRLPS +DNRPL+FEE+   +   I VSATP ++E+++  G ++ Q+IRPTGL+DP 
Sbjct: 375 NYGFRLPSALDNRPLKFEEFEKFKQPKIYVSATPSNYEIDKADGEVIHQLIRPTGLLDPV 434

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+R   +Q++++YD +     +  R ++   +KR AE+L+ YL  +  +V Y+HS   T
Sbjct: 435 IEVRPTHSQIDEIYDLLQEQKSKNERTIILTTSKRSAEELSRYLESKKQKVYYIHSTFTT 494

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER +I+  LR G +D ++GINLLREG+D+PE  LV +L+AD+E F RSKTSL Q +GRA
Sbjct: 495 FERDDILIKLRKGIYDAIIGINLLREGIDLPEVSLVIVLNADEESFFRSKTSLTQFVGRA 554

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
           AR+ + K I +AD I+KS+   I +  R R  Q ++N  +NI P+ V + I++ I     
Sbjct: 555 ARSNHGKAIFFADKISKSMAATIADNQRNRAIQHQYNLDNNITPKPVIKPIIQQI----R 610

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           E      IS+   +   +K +    + SLRKQM  AA   N+E A  ++  I  L+ S
Sbjct: 611 EKDQNKIISLIHNKNKETKAEKDKLIASLRKQMKDAAREENYELAIELQQVIAELEHS 668


>gi|239618098|ref|YP_002941420.1| excinuclease ABC, B subunit [Kosmotoga olearia TBF 19.5.1]
 gi|259710329|sp|C5CFR8|UVRB_KOSOT RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|239506929|gb|ACR80416.1| excinuclease ABC, B subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 667

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/659 (49%), Positives = 441/659 (66%), Gaps = 7/659 (1%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F ++  + P GDQP AI +L++G+   ++ Q LLGVTGSGKTFTMA +IE +Q+PA+V++
Sbjct: 3   FNLKAPFEPRGDQPEAITRLVEGLRRGDRFQTLLGVTGSGKTFTMASIIERVQQPALVIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK L AQLY EF++FFP N VE F+SYYDYYQPEAY+P  D YIEK++ IN+ + RMR 
Sbjct: 63  PNKALVAQLYREFRSFFPENRVELFISYYDYYQPEAYIPTKDLYIEKDADINDLLARMRI 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SA +S+L R D +VV+SVS IY  G    + ++ + L+IG  + + EL   L   QY R 
Sbjct: 123 SALKSVLTRKDVVVVASVSAIYASGDPRDFQELNISLEIGQRIPRNELALKLASIQYSRS 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +     G F + GD +EIFP + ED   R+  F ++IE I  F P+  + +   + I IY
Sbjct: 183 EDISSGGVFHLRGDVVEIFPPY-EDYGIRIYFFDDEIERIISFDPMNRKTLEEFDRIIIY 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               +VT    +  A+K I+ +L++R  ELEK G+ LEAQRL+QR  YDLEML T G C 
Sbjct: 242 PAKEFVTTEEKIKHAVKEIERDLELRAKELEKNGKYLEAQRLKQRTLYDLEMLTTLGYCS 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPE-DSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
            IENYSRY  GR PGEPP T+ +Y  + + ++F+DESH+T+PQI  MY GD  RK  L E
Sbjct: 302 GIENYSRYFDGRKPGEPPYTILDYFDKSEMIVFLDESHITVPQIRAMYHGDHSRKKNLVE 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS  DNRPL FEE+       I VSATPG +EL      IVEQ+IRPTGL+DP V
Sbjct: 362 YGFRLPSAFDNRPLTFEEFLESVGQIIFVSATPGDYELSVSTQ-IVEQLIRPTGLIDPEV 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            ++  + QV+D  +E+    ++G R L+TVLTK+ AE  + YL E  IR  Y+HSE+ T+
Sbjct: 421 VVKPTQNQVDDFIEEVQKVIERGERALVTVLTKKAAEMFSAYLNELGIRAEYLHSELDTV 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+E+++ LR G  DV+VG+NLLREGLD+PE  LVAI+DADKEGFLRS+T+LIQTIGRAA
Sbjct: 481 ERVEVLKKLREGSVDVVVGVNLLREGLDLPEVSLVAIMDADKEGFLRSETTLIQTIGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN+N KV+LYAD IT S++ AI+ET RRR KQL +N +H+I P+S+ + + E I     +
Sbjct: 541 RNINGKVLLYADRITNSMKRAIEETNRRRMKQLMYNIEHDIKPESIVKPLYENIFEEFAD 600

Query: 740 DAATTNISI----DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           +     I+     D         + + +L  L ++M  A+  L +E+AA +RDE+ R+K
Sbjct: 601 NEEKIEIAKNTYLDGILALKEDLEAEEYLALLEEEMWRASSELRYEDAAMLRDEMLRIK 659


>gi|203284737|ref|YP_002222477.1| excinuclease ABC, subunit B [Borrelia duttonii Ly]
 gi|201084180|gb|ACH93771.1| excinuclease ABC, subunit B [Borrelia duttonii Ly]
          Length = 654

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/654 (46%), Positives = 429/654 (65%), Gaps = 6/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P+GDQP AI ++ + I    + Q L GVTGSGKTFT+A +I  ++RP+++++
Sbjct: 3   FCLKSDYFPAGDQPKAIREIKESILRNNRYQTLKGVTGSGKTFTIANIIRDLERPSLIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPE+YVP  D YIEKE++INE I+  R 
Sbjct: 63  HNKTLAAQLYREFKDFFPDNAVEYFVSYYDYYQPESYVPSKDLYIEKEATINEDIEIKRI 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
               SL  R D IVV++VS IY +GS   +        +G  +  KE+    VK QY+R 
Sbjct: 123 RTVTSLSRRRDVIVVATVSSIYALGSPIFFKSAANVFFVGQKISIKEIADVFVKLQYERT 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
              +    F + GD +EI+PS+   D A+R+ +  + I +I+   PLT +K+       +
Sbjct: 183 FTNLEHDKFSIKGDVVEIWPSNEHGDFAYRIYLDFDKIMQINRISPLTKKKLGFANEFTL 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +A S++V P   +  A+  I+ +L+M+    ++  +L+EA+RL+QR+ YD+EML  TGSC
Sbjct: 243 FAKSYFVIPYEKILNALPEIQVDLEMQYRYFQENNKLVEAERLKQRVKYDIEMLRETGSC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           Q IENYS Y  G    + P  LF++ PED LLF+DESHVT+PQ  GMY GD+ RK  L  
Sbjct: 303 QGIENYSAYFGGDEI-DRPYCLFDFFPEDYLLFIDESHVTLPQFRGMYNGDYSRKLNLVN 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS + NRPL++ E+  L    + VSATPG  E E+   +IVEQIIRPTGL+DP +
Sbjct: 362 FGFRLPSALKNRPLKYYEFESLINQAVFVSATPGLEESEKS-SVIVEQIIRPTGLIDPEI 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R +  Q+ED+Y EI        +IL+T LTK+M+EDLT+YL    I+ RY+H+E   +
Sbjct: 421 ILRPSDGQIEDIYSEIQRRVVLNEKILITTLTKKMSEDLTDYLLTLGIKARYLHAEFNAI 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+ II  LR  + DV+VGINLLREGLDIPE  LV ILDADK GFLRS +SLIQ IGRAA
Sbjct: 481 ERVNIITSLRKSEIDVIVGINLLREGLDIPEVSLVIILDADKVGFLRSASSLIQIIGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN +  VI+Y D I+ ++Q AI+ET RRR  Q+E+NK +NI P+++ +K+  +++     
Sbjct: 541 RNSHGCVIMYYDQISCAMQEAIEETRRRRNIQIEYNKANNIVPKTIVKKVQSILEKEFKN 600

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +    N+       +LS++     +  L+ +++ A ++  FE+A  +RD+IK L
Sbjct: 601 ETLDYNVEKIISDNNLSREDL---IIKLKFELNEAVEDERFEDAIFLRDKIKEL 651


>gi|203288263|ref|YP_002223278.1| excinuclease ABC, subunit B [Borrelia recurrentis A1]
 gi|201085483|gb|ACH95057.1| excinuclease ABC, subunit B [Borrelia recurrentis A1]
          Length = 654

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/654 (46%), Positives = 428/654 (65%), Gaps = 6/654 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F +++DY P+GDQP AI ++ + I    + Q L GVTGSGKTFT+A +I  ++RP+++++
Sbjct: 3   FCLKSDYFPAGDQPKAIREIKESILRNNRYQTLKGVTGSGKTFTIANIIRDLERPSLIIS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK+FFP NAVEYFVSYYDYYQPE+YVP  D YIEKE++INE I+  R 
Sbjct: 63  HNKTLAAQLYREFKDFFPDNAVEYFVSYYDYYQPESYVPSKDLYIEKEATINEDIEIKRI 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
               SL  R D IVV++VS IY +GS   +        +G  +  KE+    VK QY+R 
Sbjct: 123 RTVTSLSRRRDVIVVATVSSIYALGSPIFFKSAANVFFVGQKISIKEIADVFVKLQYERT 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
              +    F + GD +EI+PS+   D A+R+ +  + I +I+   PLT +K+       +
Sbjct: 183 FTNLEHDKFSIKGDVVEIWPSNEHGDFAYRIYLDFDKIMQINRISPLTKKKLGFANEFTL 242

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +A S++V P   +  A+  I+ +L+M+    ++  +L+EA+RL+QR+ YD+EML  TGSC
Sbjct: 243 FAKSYFVIPYEKILNALPEIQVDLEMQYRYFQENNKLVEAERLKQRVKYDIEMLRETGSC 302

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           Q IENYS Y  G    + P  LF++ PED LLF+DESHVT+PQ  GMY GD+ RK  L  
Sbjct: 303 QGIENYSAYFGGDEI-DRPYCLFDFFPEDYLLFIDESHVTLPQFRGMYNGDYSRKLNLVN 361

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +GFRLPS + NRPL++ E+  L    + VSATPG  E ++   +IVEQIIRPTGLVDP +
Sbjct: 362 FGFRLPSALKNRPLKYYEFESLINQAVFVSATPGLEESKKS-SVIVEQIIRPTGLVDPEI 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R +  Q+ED+Y EI        +IL+T LTK+M+EDLT+YL    I+ RY+H+E   +
Sbjct: 421 ILRPSDGQIEDIYSEIQRRVVLNEKILITTLTKKMSEDLTDYLLTLGIKARYLHAEFNAI 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER+ II  LR  + DV+VGINLLREGLDIPE  LV ILDADK GFLRS +SLIQ IGRAA
Sbjct: 481 ERVNIITSLRKSEIDVIVGINLLREGLDIPEVSLVIILDADKVGFLRSASSLIQIIGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           RN +  VI+Y D I+ ++Q AI++T RRR  Q+E+NK +NI P+++ +K+  +++     
Sbjct: 541 RNSHGCVIMYYDQISCAMQEAIEKTRRRRNIQIEYNKANNIVPKTIVKKVQSILEKEFKN 600

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                N+       +LS++     +  L+ +++ A ++  FE+A  +RD+IK L
Sbjct: 601 KTLDYNVEKIISDNNLSREDL---IIKLKFELNEAVEDERFEDAIFLRDKIKEL 651


>gi|322378800|ref|ZP_08053229.1| excinuclease ABC subunit B [Helicobacter suis HS1]
 gi|322380649|ref|ZP_08054801.1| excinuclease ABC subunit B [Helicobacter suis HS5]
 gi|321146971|gb|EFX41719.1| excinuclease ABC subunit B [Helicobacter suis HS5]
 gi|321148830|gb|EFX43301.1| excinuclease ABC subunit B [Helicobacter suis HS1]
          Length = 627

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/632 (47%), Positives = 420/632 (66%), Gaps = 10/632 (1%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
             K Q L+GVTGSGKTF+MA +I  +Q P +VM+ NK L AQLYSEFK+FFP N VEYF+
Sbjct: 2   NAKYQTLVGVTGSGKTFSMAYLISKLQMPTLVMSHNKTLCAQLYSEFKSFFPKNHVEYFI 61

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
           S++DYYQPE+Y+PR D +IEK+SSINE ++R+R SA  SLL  +D +VV+SVS  YG+G+
Sbjct: 62  SHFDYYQPESYIPRRDLFIEKDSSINEDLERLRLSAITSLLGYDDVVVVASVSANYGLGN 121

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
              Y  M+ ++++G  +   + L  LV+  Y+RQDI + RG FRV G+S++IFP++ +  
Sbjct: 122 PAEYLSMLEKIEVGQQISYTQFLLKLVEMGYERQDI-LERGYFRVVGESVDIFPAYNDSN 180

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             RV  FG++++ I+    L    I+++++  +YA S ++     L  A+  I+ EL  R
Sbjct: 181 FIRVEFFGDEVDRITYMDALENTPIQSLDSYILYAASAFIVSPQCLKKALSSIETELAQR 240

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L   ++E +LLE +RL+ R  +DLEM+ TTG C+ IENYSR+ TG+  GE P TL +Y  
Sbjct: 241 LEFFKQEQKLLEYERLKTRTEFDLEMMGTTGICKGIENYSRHFTGKQAGETPYTLMDYFA 300

Query: 467 E---DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP 523
           +     L+ VDESHV++PQ  GMY GD  RK  L E+GFRLPS +DNRPL++EE+    P
Sbjct: 301 QKNCPYLVIVDESHVSLPQFKGMYAGDLSRKQVLVEHGFRLPSALDNRPLKYEEFIQKAP 360

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             + VSATP   ELE     +  QIIRPTGL+DP   +R  + QV D+   I     +  
Sbjct: 361 HFLFVSATPNPLELELSGNHVASQIIRPTGLLDPEYCLRPTQNQVNDLLKTIQSVVAKKE 420

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+T LTKRMAE+L ++  E  ++V+Y+HS+   + R   IR LRLG+ DVL+GINLLR
Sbjct: 421 RVLVTTLTKRMAEELCKHYAECGLKVQYLHSDTDVIARNHSIRALRLGEIDVLIGINLLR 480

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
           EGLD+PE  LVAILDADKEGFLRS T+LIQT+GRAAR+V+ +VI YAD IT S+Q A+D 
Sbjct: 481 EGLDLPEVSLVAILDADKEGFLRSSTALIQTMGRAARHVHGRVIFYADKITPSMQEAMDI 540

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
           T  RR KQ+  N++H + P+ V   +   +  I L   +  N++       + K + +  
Sbjct: 541 TDSRRAKQMAFNQEHGLTPRGVNRPLEAELKEIELSKPSKKNLN------KMPKSEKERL 594

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +K+LR QM   A  L+FE AA++RDEI R++ 
Sbjct: 595 IKTLRAQMQERARVLDFENAAKLRDEIARIRG 626


>gi|330723661|gb|AEC46031.1| excinuclease ABC subunit B [Mycoplasma hyorhinis MCLD]
          Length = 653

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/657 (42%), Positives = 414/657 (63%), Gaps = 4/657 (0%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +++ P+GDQP AI  L+ GI + +  Q+LLGVTGSGKTFTMA VI  + RP +++
Sbjct: 1   MFKLVSNFQPTGDQPKAIKALVDGIKNHKDHQVLLGVTGSGKTFTMANVIAQLNRPVLIL 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           +  K LA+QLY+EFK FFP N VEYFVSY+D+Y+PEAY+P  D YI+K S  N  ++ MR
Sbjct: 61  SHTKTLASQLYTEFKEFFPENRVEYFVSYFDFYRPEAYLPAKDVYIDKTSQTNWDLEAMR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SA  +L  R D IVVSSV+ IYG  + + Y Q  + L++   ++  +    LVK QY R
Sbjct: 121 MSALNALTLRRDTIVVSSVAAIYGSYNPKEYKQHFLNLELNQELKPSDFAIELVKIQYSR 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             +  + G+F   GD   I P+  +    ++  FGN IE+IS+ +P+  + I+   +  I
Sbjct: 181 NQVDTVPGSFSAKGDVFIISPAWTDKYLIKIEFFGNIIEKISKIHPVDKKIIQTFTSYTI 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  S Y     T+ TA+K I  EL  +L   EKEG+LLE QRL +R+  D++ L   G C
Sbjct: 241 FPASAYTLSPNTIQTAIKTILTELDFQLNYFEKEGKLLEKQRLNERVLNDVDSLNNFGFC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           + IENY+R++  R  GE P +L +Y+PED+L+F+DESH  I Q++ MY+GD  RK +L  
Sbjct: 301 KGIENYARHIDQREAGEQPYSLLDYLPEDALIFIDESHEMITQLNRMYKGDRSRKLSLVN 360

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           YGFRLPS +DNRPL+FEE+   +   I VSATP ++E+++  G ++ Q+IRPTGL+DP +
Sbjct: 361 YGFRLPSALDNRPLKFEEFEKFKQPKIYVSATPSNYEIDKADGEVIHQLIRPTGLLDPVI 420

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R   +Q++++YD +     +  R ++   +KR AE+L+ YL  +  +V Y+HS   T 
Sbjct: 421 EVRPTHSQIDEIYDLLQEQKSKNERTIILTTSKRSAEELSRYLESKKQKVYYIHSTFTTF 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +I+  LR G +D ++GINLLREG+D+PE  LV +L+AD+E F RSKTSL Q +GRAA
Sbjct: 481 ERDDILIKLRKGIYDAIIGINLLREGIDLPEVSLVIVLNADEESFFRSKTSLTQFVGRAA 540

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           R+ + K I +AD I+KS+   I +  R R  Q ++N  +NI P+ V   I++ I     E
Sbjct: 541 RSNHGKAIFFADKISKSMAATIADNQRNRAIQHQYNLDNNITPKPVIRPIIQQI----RE 596

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
                 IS+   +   +K +    + SLRKQM  +A   N+E A  ++  I  L+ S
Sbjct: 597 KDQNKIISLIHNKNKETKAEKDKLIASLRKQMKDSAREENYELAIELQQVIAELEHS 653


>gi|209554160|ref|YP_002284542.1| excinuclease ABC subunit B [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|209541661|gb|ACI59890.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
          Length = 666

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/662 (46%), Positives = 420/662 (63%), Gaps = 9/662 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D    ++ + Y P+GDQ  AI +++  I+     Q+LLG TG+GKTF++A VI   Q   
Sbjct: 3   DFKKLELVSSYKPAGDQQKAIDEMVNNINQGINRQVLLGATGTGKTFSVANVIAKTQLKT 62

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LAAQL++E K  FPHN VEYFVSY+DYYQPEAY P TDTYIEK+S  N +I+
Sbjct: 63  LVLAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIE 122

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            MR S   SL  RND IVV+SV+CIY   S   +++  + L +G+S++ +++   LV+  
Sbjct: 123 MMRLSTINSLATRNDVIVVASVACIYASVSPVEFTKKNLYLHVGESIDFEQIKYKLVQLG 182

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R+D  ++ GTFR+ GD IEI P + +    RVSMFGN++E I    P+T   I   + 
Sbjct: 183 YERKDHDLLPGTFRIRGDLIEIMPGYSDKFKIRVSMFGNEVEAIDLCDPITNNVISKEQR 242

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             + + S Y+     L+ A+  IK+EL  R+    K  +L+EAQR+EQR   D+E +   
Sbjct: 243 FILRSASEYIFDDSRLSIAIDNIKKELDERVKFFLKNNQLIEAQRIEQRTKQDIEGIVEF 302

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHR 493
           G C  +ENY R+L  R P + P T+F++     +D LL VDESH+++PQ+ GMY  D  R
Sbjct: 303 GFCSGVENYYRHLEHREPFQTPWTIFDFFGYNNQDWLLIVDESHISLPQVKGMYNTDRSR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL EYGFRLPS +DNRPL ++E+N      I VSATP   E+      IV QI+RPTG
Sbjct: 363 KQTLVEYGFRLPSALDNRPLNYDEFNEKISKVIYVSATPNDEEIALSNNHIVSQIVRPTG 422

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VEIR    Q++D+ +E+ L      R  +TV+T RMAEDLT YL    ++  Y+H
Sbjct: 423 LLDPIVEIRKTEHQIDDLINELMLLKNNNQRAFITVMTIRMAEDLTNYLNNTKVKAAYLH 482

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +E+KTLER  II  LR G +D +VGINLLREGLD+PE   V I DADK GF RS  SLIQ
Sbjct: 483 NELKTLERSSIINKLRKGIYDCIVGINLLREGLDVPEVARVFIFDADKPGFFRSDKSLIQ 542

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            IGRAARN + KVI+YADTIT+++Q+AIDET RRRE QL+ N KHNI P+++ + I E +
Sbjct: 543 IIGRAARNADGKVIMYADTITQAMQVAIDETKRRREIQLDFNLKHNIVPKTIIKPIHEDL 602

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                +  A    +        SK +    +K L+K+M  AA    +E AA+ RD I  L
Sbjct: 603 SGHDYKQNAELYAA------KASKNEYDQKIKELKKKMEEAAKKREYEIAAQYRDMIVEL 656

Query: 794 KS 795
           ++
Sbjct: 657 EA 658


>gi|171920764|ref|ZP_02931962.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|188524112|ref|ZP_03004189.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|195867738|ref|ZP_03079739.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198273465|ref|ZP_03206001.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|171903515|gb|EDT49804.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|195659906|gb|EDX53286.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|195660593|gb|EDX53849.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198249985|gb|EDY74765.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
          Length = 666

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/662 (46%), Positives = 420/662 (63%), Gaps = 9/662 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D    ++ + Y P+GDQ  AI +++  I+     Q+LLG TG+GKTF++A VI   Q   
Sbjct: 3   DFKKLELVSSYKPAGDQQKAIDEMVNNINQGINRQVLLGATGTGKTFSVANVIAKTQLKT 62

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LAAQL++E K  FPHN VEYFVSY+DYYQPEAY P TDTYIEK+S  N +I+
Sbjct: 63  LVLAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIE 122

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            MR S   SL  RND IVV+SV+CIY   S   +++  + L +G+S++ +++   LV+  
Sbjct: 123 MMRLSTINSLATRNDVIVVASVACIYASVSPVEFTKKNLYLHVGESIDFEQIKYKLVQLG 182

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R+D  ++ GTFR+ GD IEI P + +    RVSMFGN++E I    P+T   I   + 
Sbjct: 183 YERKDHDLLPGTFRIRGDLIEIMPGYSDKFKIRVSMFGNEVEAIDLCDPITNNVISKEQR 242

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             + + S Y+     L+ A+  IK+EL  R+    K  +L+EAQR+EQR   D+E +   
Sbjct: 243 FILRSASEYIFDDSRLSIAIDNIKKELDERVKFFLKNNQLIEAQRIEQRTKQDIEGIVEF 302

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHR 493
           G C  +ENY R+L  R P + P T+F++     +D LL VDESH+++PQ+ GMY  D  R
Sbjct: 303 GFCSGVENYYRHLEHREPFQTPWTIFDFFGYNNQDWLLIVDESHISLPQVKGMYNTDRSR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL EYGFRLPS +DNRPL ++E+N      I VSATP   E+      IV QI+RPTG
Sbjct: 363 KQTLVEYGFRLPSALDNRPLNYDEFNEKISKVIYVSATPNDEEIALSNNHIVSQIVRPTG 422

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VEIR    Q++D+ +E+ L      R  +TV+T RMAEDLT YL    ++  Y+H
Sbjct: 423 LLDPIVEIRKTEHQIDDLINELMLLKNNNQRAFITVMTIRMAEDLTNYLNNTKVKAAYLH 482

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +E+KTLER  II  LR G +D +VGINLLREGLD+PE   V I DADK GF RS  SLIQ
Sbjct: 483 NELKTLERSAIINKLRKGIYDCIVGINLLREGLDVPEVARVFIFDADKPGFFRSDKSLIQ 542

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            IGRAARN + KVI+YADTIT+++Q+AIDET RRRE QL+ N KHNI P+++ + I E +
Sbjct: 543 IIGRAARNADGKVIMYADTITQAMQVAIDETKRRREIQLDFNLKHNIVPKTIIKPIHEDL 602

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                +  A    +        SK +    +K L+K+M  AA    +E AA+ RD I  L
Sbjct: 603 SGHDYKQNAELYAA------KASKNEYDQKIKELKKKMEEAAKKREYEIAAQYRDMIVEL 656

Query: 794 KS 795
           ++
Sbjct: 657 EA 658


>gi|71894082|ref|YP_278190.1| excinuclease ABC subunit B [Mycoplasma synoviae 53]
 gi|71850870|gb|AAZ43479.1| excinuclease ABC subunit B [Mycoplasma synoviae 53]
          Length = 668

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/667 (42%), Positives = 422/667 (63%), Gaps = 3/667 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ +++ P GDQP AI +L++GI +  K Q+LLGVTGSGKTFT+A VI+   RPAI
Sbjct: 1   MKIFKLNSNFTPQGDQPKAINELVQGIKNNRKDQVLLGVTGSGKTFTIANVIKEFDRPAI 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +++ NK LA+QLYSE K FFP NAVEYF+SY+DYY+PEAY   TDTYIEK+S+ N+QI+ 
Sbjct: 61  ILSHNKTLASQLYSELKAFFPENAVEYFISYFDYYRPEAYKANTDTYIEKDSATNQQIEI 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SA  SLL R D IVV+SVS IYG  + E Y++      +   +  K+ +  L K +Y
Sbjct: 121 LRLSAYNSLLTRKDVIVVASVSAIYGALNPEVYNKSFYNFYLNQKISVKDFIIKLTKNKY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D+ ++ G F V GD + I P+  E    RVS   ++IEEI+  +PL    I+ V   
Sbjct: 181 ERNDLDVVPGRFAVKGDLVFIAPADSETKMIRVSFSYDEIEEIAFVHPLEKTTIKKVSHY 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +     Y T     +T +  I+EELK R+   +   ++LEA R+ QR   D++ ++  G
Sbjct: 241 TLSPGDAYATDNSIYSTVIPQIQEELKERVKYYKDNNQILEATRINQRTNNDIDDMKEFG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C+ IENYS YL GR  G+ P T+ +Y PE+SL+F+DESH+++PQI  M+ GD  RK  L
Sbjct: 301 HCKGIENYSMYLDGRTFGQRPYTILDYFPENSLMFIDESHMSLPQIRAMHAGDRSRKNEL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLR-PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
            +Y FRLPS ++NRPL F+E+        I +SATP ++E+ +  G +    +RPTGL+D
Sbjct: 361 VKYAFRLPSALENRPLTFDEFENSFSFNKIYISATPEAYEINKTAGAVTTLYVRPTGLID 420

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P + I     Q+E +Y+ I    + G + L+  +TKR+AE+++ Y  +R I+  Y+HS+ 
Sbjct: 421 PEIFIYPKENQIERIYNIIMEQRKTGEKTLVLTVTKRLAEEISNYFIDRKIKAAYIHSDH 480

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           +T  R EI+R LR+G ++V++GINLLREG+DIPE   V ILDAD  GFLR+  SLIQ +G
Sbjct: 481 ETFVRNEILRKLRMGTYEVVIGINLLREGIDIPEVSKVIILDADSNGFLRNTKSLIQIVG 540

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           RAARN N + IL+ADTIT +I+  +++   +R+ Q+E+N+K+ I P+++ + I   I   
Sbjct: 541 RAARNANGQAILFADTITSAIKEMMEDNKIKRKIQMEYNQKYRIVPKTIIKPIRGAIYNE 600

Query: 737 LLEDAATTNISIDAQQLSLS--KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
             E+A    +    +       KK   + ++ L  QM  AA   ++EEA R+RD I  +K
Sbjct: 601 NYENAMEILLKKSQKSKFSKNEKKALNSLIEDLEIQMKKAAKEYDYEEAIRLRDMIHEIK 660

Query: 795 SSPYFQG 801
            S   +G
Sbjct: 661 QSQSNKG 667


>gi|225550497|ref|ZP_03771446.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
 gi|225379651|gb|EEH02013.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
          Length = 666

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/662 (46%), Positives = 420/662 (63%), Gaps = 9/662 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D    ++ + Y P+GDQ  AI +++  I+     Q+LLG TG+GKTF++A VI   Q   
Sbjct: 3   DFKKLELVSSYKPAGDQQKAIDEMVNNINQGINRQVLLGATGTGKTFSVANVIAKTQLKT 62

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LAAQL++E K  FPHN VEYFVSY+DYYQPEAY P TDTYIEK+S  N +I+
Sbjct: 63  LVLAHNKTLAAQLFAELKEIFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIE 122

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            MR S   SL  RND IVV+SV+CIY   S   +++  + L +G+S++ +++   LV+  
Sbjct: 123 MMRLSTINSLATRNDVIVVASVACIYASVSPVEFTKKNLYLHVGESIDFEQIKYKLVQLG 182

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R+D  ++ GTFR+ GD IEI P + +    RVSMFGN++E I    P+T   I   + 
Sbjct: 183 YERKDHDLLPGTFRIRGDLIEIMPGYSDKFKIRVSMFGNEVEAIDLCDPITNNVISKEQR 242

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             + + S Y+     L+ A+  IK+EL  R+    K  +L+EAQR+EQR   D+E +   
Sbjct: 243 FILRSASEYIFDDSRLSIAIDNIKKELDERVKFFLKNNQLIEAQRIEQRTKQDIEGIVEF 302

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHR 493
           G C  +ENY R+L  R P + P T+F++     +D LL VDESH+++PQ+ GMY  D  R
Sbjct: 303 GFCSGVENYYRHLEHREPFQTPWTIFDFFGYNNQDWLLIVDESHISLPQVKGMYNTDRSR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL EYGFRLPS +DNRPL ++E+N      I VSATP   E+      IV QI+RPTG
Sbjct: 363 KQTLVEYGFRLPSALDNRPLNYDEFNEKISKVIYVSATPNDEEIALSNNHIVSQIVRPTG 422

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VEIR    Q++D+ +E+ L      R  +TV+T RMAEDLT YL    ++  Y+H
Sbjct: 423 LLDPIVEIRKTEHQIDDLINELMLLKNNNQRAFITVMTIRMAEDLTNYLNNTKVKAAYLH 482

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +E+KTLER  II  LR G +D +VGINLLREGLD+PE   V I DADK GF RS  SLIQ
Sbjct: 483 NELKTLERSAIINKLRKGIYDCIVGINLLREGLDVPEVARVFIFDADKPGFFRSDKSLIQ 542

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            IGRAARN + KVI+YADTIT+++Q+AIDET RRRE QL+ N KHNI P+++ + I E +
Sbjct: 543 IIGRAARNADGKVIMYADTITQAMQVAIDETKRRREIQLDFNLKHNIVPKTIIKPIHEDL 602

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                +  A    +        SK +    +K L+K+M  AA    +E AA+ RD I  L
Sbjct: 603 SGHDYKQNAELYAA------KASKNEYDQKIKELKKKMEEAAKKREYEIAAQYRDMIVEL 656

Query: 794 KS 795
           ++
Sbjct: 657 EA 658


>gi|269115248|ref|YP_003303011.1| UvrABC system protein B [Mycoplasma hominis]
 gi|268322873|emb|CAX37608.1| UvrABC system protein B [Mycoplasma hominis ATCC 23114]
          Length = 656

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/656 (42%), Positives = 416/656 (63%), Gaps = 6/656 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI +L+ G+   ++ Q+LLGVTGSGKTFTMA VI  + RP +
Sbjct: 1   MEKFKLVSNYKPAGDQPQAINELVHGVLEGKEHQVLLGVTGSGKTFTMANVINQLNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LA+QLYSE +  FP N VEYFVSY+D+Y+PEAY+P++D YIEK S  N+ ++ 
Sbjct: 61  VISHNKTLASQLYSELRELFPENRVEYFVSYFDFYKPEAYIPKSDLYIEKTSRNNKDLEA 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SA  +L  R D IVV+SV+ IY   + + Y Q  + ++    ++ ++LL+ LV   Y
Sbjct: 121 MRMSALNALSIRRDTIVVASVAAIYAEFNPKEYIQSFMPIESHMKIKLRDLLTKLVNLGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           ++ +  +  G F   G+ IEI P +  +   R+ MF + IE IS   PLT   +   +++
Sbjct: 181 EKHNGDLSSGQFFNKGEVIEICPGYTSENNIRIEMFDDYIERISLINPLTKSIVEVCKSL 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  + Y   +  +      I+ ELK R+   + + +LLEAQR+  +   D++ L+  G
Sbjct: 241 TIFPATTYNVEKGYIENICNSIESELKERVAYFKSQNQLLEAQRIHDKTLNDIDSLKEFG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
             + IENY+RY+  R PG+ P T+F+Y+P+D+++FVDESH+ IPQI GMY GD  RK TL
Sbjct: 301 YVKGIENYARYVDKREPGQKPYTIFDYLPKDAVIFVDESHLMIPQIIGMYEGDRSRKETL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            +YGFRLPS +DNRPL+F E+   +   I +SATPG +E+ +  G +V Q IRPTGL+DP
Sbjct: 361 IKYGFRLPSALDNRPLKFNEYEEYKFPRIYMSATPGDYEINKANGELVTQYIRPTGLLDP 420

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            +EI S   Q++D++D + L  ++  R L+   TK+ AE+L+ YL E  I+  Y+H   K
Sbjct: 421 IIEIHSKENQIQDIHDLLKLQIEKKERTLILTTTKKNAEELSLYLSEFKIKSAYIHDGFK 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           T ER EI++ LR+GK+DV++GINLLREG+D+PE  L+ +L+AD  G +R   SLIQ +GR
Sbjct: 481 TFERNEILKGLRMGKYDVVIGINLLREGIDLPEVSLICVLNADSMGLMRDARSLIQIVGR 540

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           A+RN + KVI YAD IT S+Q AI +   +R  Q+++NK+HNI P+S+ + I   I   +
Sbjct: 541 ASRNDHGKVIFYADNITTSMQKAIVDNEHKRTLQIKYNKEHNITPKSIIKPIPAPIQGSI 600

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           L +        +    +      K ++ ++ K M   A    +EEA  IRD +  L
Sbjct: 601 LLEDNKAIKEANRTIHN------KKYIDNMIKHMKELARAKKYEEAIEIRDYLIEL 650


>gi|185178702|ref|ZP_02964521.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188518557|ref|ZP_03004017.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|225551332|ref|ZP_03772278.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|184209295|gb|EDU06338.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188997878|gb|EDU66975.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|225379147|gb|EEH01512.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
          Length = 666

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/662 (46%), Positives = 420/662 (63%), Gaps = 9/662 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D    ++ + Y P+GDQ  AI +++  I+     Q+LLG TG+GKTF++A VI   Q   
Sbjct: 3   DFKKLELVSSYKPAGDQQKAIDEMVNNINQGINRQVLLGATGTGKTFSVANVIAKTQLKT 62

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LAAQL++E K  FPHN VEYFVSY+DYYQPEAY P TDTYIEK+S  N +I+
Sbjct: 63  LVLAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIE 122

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            MR S   SL  RND IVV+SV+CIY   S   +++  + L +G+S++ +++   LV+  
Sbjct: 123 MMRLSTINSLATRNDVIVVASVACIYASVSPVEFTKKNLYLHVGESIDFEQIKYKLVQLG 182

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R+D  ++ GTFR+ GD IEI P + +    RVSMFGN++E I    P+T   I   + 
Sbjct: 183 YERKDHDLLPGTFRIRGDLIEIMPGYSDKFKIRVSMFGNEVEAIDLCDPITNNVISKEQR 242

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             + + S Y+     L+ A+  IK+EL  R+    K  +L+EAQR+EQR   D+E +   
Sbjct: 243 FILRSASEYIFDDSRLSIAIDNIKKELNERVKFFLKNNQLIEAQRIEQRTKQDIEGIVEF 302

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHR 493
           G C  +ENY R+L  R P + P T+F++     +D LL VDESH+++PQ+ GMY  D  R
Sbjct: 303 GFCSGVENYYRHLEHREPFQTPWTIFDFFGYNNQDWLLIVDESHISLPQVKGMYNTDRSR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL EYGFRLPS +DNRPL ++E+N      I VSATP   E+      IV QI+RPTG
Sbjct: 363 KQTLVEYGFRLPSALDNRPLNYDEFNEKISKVIYVSATPNDEEIALSNNHIVSQIVRPTG 422

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VEIR    Q++D+ +E+ L      R  +TV+T RMAEDLT YL    ++  Y+H
Sbjct: 423 LLDPIVEIRKTEHQIDDLINELMLLKNNNQRAFITVMTIRMAEDLTNYLNNTKVKAAYLH 482

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +E+KTLER  II  LR G +D +VGINLLREGLD+PE   V I DADK GF RS  SLIQ
Sbjct: 483 NELKTLERSAIINKLRKGIYDCIVGINLLREGLDVPEVARVFIFDADKPGFFRSDKSLIQ 542

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            IGRAARN + KVI+YADTIT+++Q+AIDET RRRE QL+ N KHNI P+++ + I + +
Sbjct: 543 IIGRAARNADGKVIMYADTITQAMQVAIDETKRRREIQLDFNLKHNIVPKTIIKPIHKDL 602

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                +  A    +        SK +    +K L+K+M  AA    +E AA+ RD I  L
Sbjct: 603 SGHDYKQNAELYAA------KASKNEYDQKIKELKKKMEEAAKKREYEIAAQYRDMIVEL 656

Query: 794 KS 795
           ++
Sbjct: 657 EA 658


>gi|312601591|gb|ADQ90846.1| excinuclease ABC subunit B [Mycoplasma hyopneumoniae 168]
          Length = 679

 Score =  692 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/661 (44%), Positives = 430/661 (65%), Gaps = 7/661 (1%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
            K+   F++  +Y PSGDQP AI  L+ GI S +K Q+LLGVTGSGKTFTMA VI    +
Sbjct: 22  EKEFKKFKLVANYKPSGDQPKAIKNLINGIKSGKKSQVLLGVTGSGKTFTMANVIAYFNK 81

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P I+++ NK LA+QLYSEFK FFP N VE+++SY+D+Y+PEAY+P  D Y+EK S  N  
Sbjct: 82  PVIILSHNKTLASQLYSEFKEFFPENRVEFYISYFDFYRPEAYLPTKDVYLEKTSKTNFD 141

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++ MR SA  +L+ RND IV++SV+ IYG  + + Y    + L++   ++  EL   L +
Sbjct: 142 LETMRMSALNALMMRNDTIVIASVAAIYGTLNPDEYQDNFLVLEVDQEIKPNELALKLAR 201

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            +Y+   I    G F + GD +EIFP+  +    RV  FGN IE I+  +P++   I++ 
Sbjct: 202 IKYENNQIEQKPGIFSLKGDVLEIFPAWSDAFNIRVEFFGNIIEAINIIHPVSKSIIKSY 261

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
            +  +Y  + Y   +  +N A+K IK EL  +L   EK  +L+E QRL+ R+  D++ L 
Sbjct: 262 NSFTVYPATAYSVKKNIINRAIKTIKIELAEQLEFFEKNNKLVEKQRLKDRVNNDIDSLS 321

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENY+R++ GR  GE P +L +Y+P+D L+F+DESH+ I QI GMY GD  RK
Sbjct: 322 EFGICSGIENYARHIDGRQKGEKPFSLLDYLPQDGLIFIDESHIMISQIKGMYEGDRSRK 381

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YG+RLPS +DNRPL+  E+   +   I VSATP S+E+++  G IV QIIRPTGL
Sbjct: 382 QTLVDYGYRLPSALDNRPLKLSEFEEYQQAKIYVSATPASYEIDKANGEIVSQIIRPTGL 441

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMH 613
           +DP + I S + Q+E ++  +    ++  R L+   TKR+AE++++YL E  ++ V Y+H
Sbjct: 442 IDPEIVIESTKNQMEKIFQYLLKQKEKKERSLILTTTKRLAEEISKYLQEEKLQNVYYLH 501

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+ T ER EII  LR G +D +VGINLLREG+DIPE  L+ +L+A    FLRS++SLIQ
Sbjct: 502 SEMTTFERDEIIIKLRKGIYDAIVGINLLREGVDIPEVSLIFVLEAGLVSFLRSESSLIQ 561

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            IGRAARN + KVIL+ DT+T++I+  +     +R+ Q+E+N+K+ I P+++K+ I + I
Sbjct: 562 IIGRAARNDHGKVILFTDTVTETIEKVLKNNENKRKIQIEYNQKNKIIPKTIKKPIPDSI 621

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +P  L       IS   ++    KK+ + ++K L K+M +AAD   FEEA +IRD I  +
Sbjct: 622 NPNSL------KISKVLREKQKDKKEMENYIKILEKEMKIAADANRFEEAIQIRDLIAEI 675

Query: 794 K 794
           K
Sbjct: 676 K 676


>gi|58697071|ref|ZP_00372524.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536653|gb|EAL59959.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 590

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/558 (58%), Positives = 419/558 (75%)

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
             ++S ++ Q+LLGVTGSGKTFTMA VI    RPA++MA NK LAAQLY E K  FPHNA
Sbjct: 1   ARLNSNKRDQVLLGVTGSGKTFTMANVIARTNRPALIMAHNKTLAAQLYEEMKGLFPHNA 60

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
           VEYF+SYYDYYQPEAY+P+TDTYIEK+S+INE+I+ +R+S   SLLER D IVV+SVSCI
Sbjct: 61  VEYFISYYDYYQPEAYLPQTDTYIEKDSAINERIEMLRYSTVCSLLERRDTIVVASVSCI 120

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
           YG+GS ESY  MI+ L +G+ +   + LS+L   QYKR D    RG FRV GD ++IF S
Sbjct: 121 YGLGSPESYRSMIIPLSVGNKIRINDFLSNLTDLQYKRSDARFERGYFRVRGDIVDIFLS 180

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
           H E+ AWR+S+FG++IEEISE   +TG   + V  I I+ NS+Y+TPR  L  A++ +K+
Sbjct: 181 HYENKAWRLSLFGDEIEEISEVDAITGNVTKGVNKITIFPNSYYITPREALLQAIELVKK 240

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           EL  RL     + +++EA+RLEQR  +D+EM+ TTG C+ IENYSRYL G   G+PPPTL
Sbjct: 241 ELHERLDYYYSQNKIVEAKRLEQRTNFDIEMMRTTGICKGIENYSRYLYGMEAGDPPPTL 300

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
           FEY+P+D +LFVDESHVT+PQ+  MY G+  RK  L +YGFRLPS  DNRPL+FEEW  +
Sbjct: 301 FEYLPKDVILFVDESHVTVPQVGAMYSGNEARKKKLIDYGFRLPSAFDNRPLKFEEWEGV 360

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           RP T+ +SATPG +EL +   + +EQ+IRPTGL DP   ++   +Q++DV  E  +   +
Sbjct: 361 RPQTVYISATPGKYELAKTNNVFIEQVIRPTGLTDPICIVKPIESQIDDVIHEAQVTIGK 420

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G  +L+T LTK+MAE+L EY+ E N++V Y+HS++  LERIEII  LR  + DVLVG+NL
Sbjct: 421 GFCVLITTLTKKMAENLAEYMSELNMKVSYLHSDIAALERIEIIYKLRSKEIDVLVGVNL 480

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           LREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARN   +VILYAD IT S+  A+
Sbjct: 481 LREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNAEGRVILYADKITGSLDRAL 540

Query: 702 DETTRRREKQLEHNKKHN 719
            ET RRR+KQ EHN  HN
Sbjct: 541 RETERRRKKQEEHNILHN 558


>gi|54020288|ref|YP_116177.1| excinuclease ABC subunit B [Mycoplasma hyopneumoniae 232]
 gi|53987461|gb|AAV27662.1| excinuclease ABC subunit B [Mycoplasma hyopneumoniae 232]
          Length = 679

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/661 (44%), Positives = 432/661 (65%), Gaps = 7/661 (1%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
            K+   F++  +Y PSGDQP AI  L+ GI S +K Q+LLGVTGSGKTFTMA VI    +
Sbjct: 22  EKEFKKFKLVANYKPSGDQPKAIKNLINGIKSGKKSQVLLGVTGSGKTFTMANVIAYFNK 81

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P I+++ NK LA+QLYSEFK FFP N VE+++SY+D+Y+PEAY+P  D Y+EK S  N  
Sbjct: 82  PVIILSHNKTLASQLYSEFKEFFPENRVEFYISYFDFYRPEAYLPTKDVYLEKTSKTNFD 141

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++ MR SA  +L+ RND IV++SV+ IYG  + + Y    + L++   ++  EL   L +
Sbjct: 142 LETMRMSALNALMMRNDTIVIASVAAIYGTLNPDEYQDNFLVLEVDQEIKPNELALKLAR 201

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            +Y+   I    G F + GD +EIFP+  +    RV  FGN IE I+  +P++   I++ 
Sbjct: 202 IKYENNQIEQKPGIFSLKGDVLEIFPAWSDAFNIRVEFFGNIIETINIIHPVSKSIIKSY 261

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
            +  +Y  + Y   +  +N A++ IK EL  +L   EK  +L+E QRL+ R+  D++ L 
Sbjct: 262 NSFTVYPATAYSVKKNIINRAIETIKIELAEQLQFFEKNNKLVEKQRLKDRVNNDVDSLS 321

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENY+R++ GR  GE P +L +Y+P+D L+F+DESH+ I QI GMY GD  RK
Sbjct: 322 EFGICSGIENYARHIDGRQKGEKPFSLLDYLPQDGLIFIDESHIMISQIKGMYEGDRSRK 381

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YG+RLPS +DNRPL+  E+   +   I VSATP S+E+++  G IV QIIRPTGL
Sbjct: 382 QTLVDYGYRLPSALDNRPLKLSEFEEYQHAKIYVSATPASYEIDKANGEIVSQIIRPTGL 441

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMH 613
           +DP + I S + Q+E ++  +    ++  R L+   TKR+AE++++YL E  ++ V Y+H
Sbjct: 442 IDPEIVIESTKNQMEKIFQYLLKQKKKKERSLILTTTKRLAEEISKYLQEEKLQNVYYLH 501

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+ T ER EII  LR G +D +VGINLLREG+DIPE  L+ +L+A    FLRS++SLIQ
Sbjct: 502 SEMTTFERDEIIIKLRKGIYDAIVGINLLREGVDIPEVSLIFVLEAGLVSFLRSESSLIQ 561

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            IGRAARN + KVIL+ DT+T++I+  + +   +R+ Q+E+N+K+ I P+++K+ I + I
Sbjct: 562 IIGRAARNDHGKVILFTDTVTETIEKVLKDNENKRKIQIEYNQKNKIIPKTIKKPIPDSI 621

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +P  L       IS   ++   +KK+ + ++K L K+M +AAD   FEEA +IRD I  +
Sbjct: 622 NPNSL------KISKVLREKQKNKKEVENYIKILEKEMKIAADANRFEEAIQIRDLIAEI 675

Query: 794 K 794
           K
Sbjct: 676 K 676


>gi|12044925|ref|NP_072735.1| excinuclease ABC subunit B [Mycoplasma genitalium G37]
 gi|1351388|sp|P47319|UVRB_MYCGE RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|1045749|gb|AAC71291.1| excinuclease ABC, B subunit [Mycoplasma genitalium G37]
 gi|166078912|gb|ABY79530.1| excinuclease ABC, B subunit [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 656

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/667 (43%), Positives = 402/667 (60%), Gaps = 17/667 (2%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + N +K  + FQ+ T+Y P+GDQP AI +L +    + K Q+LLG TG+GKTFT+A VI+
Sbjct: 1   MKNQTKSNSLFQLSTNYIPTGDQPEAIKKLSEF---KTKQQVLLGATGTGKTFTIANVIQ 57

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
             Q P +V+A NK LA QL++E K  FP NAVEYF+SY+D+YQPEAY+P    YIEK ++
Sbjct: 58  NSQLPTVVIAHNKTLAGQLFNELKQLFPKNAVEYFISYFDFYQPEAYLPSKGIYIEKSAT 117

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +NE I R+R S   SL  R D IVV SV+ IY   S   + +  +   +G   + K +  
Sbjct: 118 VNEAIKRLRVSTLHSLSTRKDVIVVGSVASIYPTSSPSDFVKYCLWFVVGKDYDLKTIKD 177

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G FR  GD +E+FP + +    R+S F   +E+I +  PLT + 
Sbjct: 178 RLVSLNYVVNKQQLTPGKFRFQGDVLEVFPGYSDAFVIRISFFDTKVEQICQIDPLTNKI 237

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +  +  IKI     YV  +  L+ A+K IK+EL+ R+    K+  +  AQRL     +DL
Sbjct: 238 LNQLFEIKIGPADEYVVNQSDLDIAIKNIKQELQERVNYFNKQNLVERAQRLATITNHDL 297

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
             L+  G C  +ENY+R+L  R     P ++F+Y   D LL +DESH T+PQ++GMY  D
Sbjct: 298 NDLKAWGFCSGVENYARHLELRMANSTPYSIFDYFKGDWLLVIDESHQTLPQLNGMYNTD 357

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK +L +YGFRLPS +DNRPL F E        I VSATP   E+   Q  ++EQ++R
Sbjct: 358 LSRKQSLIDYGFRLPSALDNRPLSFAELQQKMQKVIYVSATPRDKEISLSQNNVIEQLVR 417

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PT LVDP + ++    QVED+ +EI    Q   R  +TVLT +MAE+LTEYL ER I+V 
Sbjct: 418 PTYLVDPIIVVKPKDNQVEDLIEEIINQRQNNTRTFVTVLTIKMAENLTEYLKERKIKVA 477

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+H ++K LER+ +I DLR G+++ LVGINLLREGLD+PE  LV I DAD  G  R + S
Sbjct: 478 YIHKDIKALERLLLINDLRRGEYECLVGINLLREGLDVPEVALVCIFDADIPGLPRDERS 537

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQ IGRAARN + +V++YA+ +T+ +Q AIDET RRR  Q+E+NK HN  P++V + + 
Sbjct: 538 LIQIIGRAARNEHGRVVMYANHVTEQMQKAIDETKRRRTVQMEYNKLHNKTPKTVVKPL- 596

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                        T +     +   + +K  A +K L K+M  AA N N+E A  IRD I
Sbjct: 597 -------------TFVQPIKLKAKSNAEKNAALIKQLTKEMKKAAANQNYELAIEIRDSI 643

Query: 791 KRLKSSP 797
             L+   
Sbjct: 644 FELEKEI 650


>gi|188024297|ref|ZP_02996985.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188018971|gb|EDU57011.1| excinuclease ABC, B subunit [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
          Length = 666

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/662 (46%), Positives = 420/662 (63%), Gaps = 9/662 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D    ++ + Y P+GDQ  AI +++  I+     Q+LLG TG+GKTF++A VI   Q   
Sbjct: 3   DFKKLELVSSYKPAGDQQKAIDEMVNNINQGINRQVLLGATGTGKTFSVANVIAKTQLKT 62

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LAAQL++E K  FPHN VEYFVSY+DYYQPEAY P TDTYIEK+S  N +I+
Sbjct: 63  LVLAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIE 122

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            MR S   SL  RND IVV+SV+CIY   S   +++  + L +G+S++ +++   LV+  
Sbjct: 123 MMRLSTINSLATRNDVIVVASVACIYASVSPVEFTKKNLYLHVGESIDFEQIKYKLVQLG 182

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R+D  ++ GTFR+ GD IEI P + +    RVSMFGN++E I    P+T   I   + 
Sbjct: 183 YERKDHDLLPGTFRIRGDLIEIMPGYSDKFKIRVSMFGNEVEAIDLCDPITNNVISKEQR 242

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             + + S Y+     L+ A+  IK+EL  R+    K  +L+EAQR+EQR   D+E +   
Sbjct: 243 FILRSASEYIFDDSRLSIAIDNIKKELNERVKFFLKNNQLIEAQRIEQRTKQDIEGIVEF 302

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHR 493
           G C  +ENY R+L  R P + P T+F++     +D LL VDESH+++PQ+ GMY  D  R
Sbjct: 303 GFCSGVENYYRHLEHREPFQTPWTIFDFFGYNNQDWLLIVDESHISLPQVKGMYNTDRSR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL EYGFRLPS +DNRPL ++E+N      I VSATP   E+      IV QI+RPTG
Sbjct: 363 KQTLVEYGFRLPSALDNRPLNYDEFNEKISKVIYVSATPNDEEIALSNNHIVSQIVRPTG 422

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP VEIR    Q++D+ +E+ L      R  +TV+T RMAEDLT +L    ++  Y+H
Sbjct: 423 LLDPIVEIRKTEHQIDDLINELMLLKNNNQRAFITVMTIRMAEDLTNHLNNTKVKAAYLH 482

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +E+KTLER  II  LR G +D +VGINLLREGLD+PE   V I DADK GF RS  SLIQ
Sbjct: 483 NELKTLERSAIINKLRKGIYDCIVGINLLREGLDVPEVARVFIFDADKPGFFRSDKSLIQ 542

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            IGRAARN + KVI+YADTIT+++Q+AIDET RRRE QL+ N KHNI P+++ + I + +
Sbjct: 543 IIGRAARNADGKVIMYADTITQAMQVAIDETKRRREIQLDFNLKHNIVPKTIIKPIHKDL 602

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                +  A    +        SK +    +K L+K+M  AA    +E AA+ RD I  L
Sbjct: 603 SGHDYKQNAELYAA------KASKNEYDQKIKELKKKMEEAAKKREYEIAAQYRDMIVEL 656

Query: 794 KS 795
           ++
Sbjct: 657 EA 658


>gi|269104260|ref|ZP_06156956.1| excinuclease ABC subunit B [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268160900|gb|EEZ39397.1| excinuclease ABC subunit B [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 650

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/590 (50%), Positives = 411/590 (69%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + +DY PSGDQ  AIA+L+ G+ S    Q+L G+TGSGKTFTMA VI  ++RP ++
Sbjct: 4   NSFILHSDYSPSGDQVEAIAKLVDGVESGASHQVLQGITGSGKTFTMANVIHRLKRPTLI 63

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A NK LAAQLYSE K FFP N VEYFVSYYD+YQPE Y+P +D +I K+S+INEQ++R+
Sbjct: 64  LAHNKTLAAQLYSEMKRFFPENHVEYFVSYYDFYQPEVYIPASDRFIRKDSAINEQLERL 123

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R S T++L+E+ D IVV+SVS IYG+G  E Y    + L IG  + + + +  L   QY+
Sbjct: 124 RLSTTKALIEQRDVIVVASVSAIYGLGEPELYRAAQIPLYIGRKINRSQFIEQLTSLQYQ 183

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R +  + R TFR  GD ++IFP+  E VA RV M  ++IE++    P +G+ +  +E  +
Sbjct: 184 RTEKRLERATFRSHGDIVDIFPAESEKVAIRVEMLDDEIEQLYWLDPFSGKTLGALERYR 243

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +   + Y   +  +  A   I+++L+ R+ +L +E R+ EA RL +R  YD+EM++  G 
Sbjct: 244 VSPKTLYAASKDKITKASLLIQKDLEQRVAQLNQENRITEAARLYERTMYDIEMMQQLGY 303

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  +ENYS YL  R+P  PP TL +Y+P+D LLF+DESHV IPQIS M++GD  RK TL 
Sbjct: 304 CSGLENYSCYLNDRDPTLPPTTLLDYLPKDGLLFIDESHVMIPQISAMFKGDQSRKETLI 363

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS  +NRPL F E+  ++P T+ VSATPG++EL + +  +VEQIIRPTGL+DP 
Sbjct: 364 EYGFRLPSAKNNRPLDFNEFEKIKPQTLFVSATPGNYELSKAKTPVVEQIIRPTGLLDPT 423

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E+RS+  Q+ ++ DEI +  ++G R L+  LTK+ AE L EY+ E++ +V Y+HS+VKT
Sbjct: 424 IEVRSSSNQISNLLDEIKIRIEKGERTLVNTLTKKSAESLYEYMQEQSFKVSYLHSDVKT 483

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            +R+ II  LR G+ D+L+GINLLREGLDIPE  LVAILDAD  GFLRSK +LIQ IGRA
Sbjct: 484 EDRVRIIEQLRAGELDILIGINLLREGLDIPEASLVAILDADHAGFLRSKAALIQIIGRA 543

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           ARN N   ILY + +T ++Q AIDE+  RR +Q+++N  H INP +   +
Sbjct: 544 ARNKNGMAILYGNKVTPAMQQAIDESLDRRSRQIQYNHLHQINPITSIRQ 593


>gi|144227741|gb|AAZ44731.2| excinuclease ABC subunit B [Mycoplasma hyopneumoniae J]
          Length = 661

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/661 (44%), Positives = 431/661 (65%), Gaps = 7/661 (1%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
            K+   F++  +Y PSGDQP AI  L+ GI S +K Q+LLGVTGSGKTFTMA VI    +
Sbjct: 4   EKEFKKFKLVANYKPSGDQPKAIKNLINGIKSGKKSQVLLGVTGSGKTFTMANVIAYFNK 63

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P I+++ NK LA+QLYSEFK FFP N VE+++SY+D+Y+PEAY+P  D Y+EK S  N  
Sbjct: 64  PVIILSHNKTLASQLYSEFKEFFPENRVEFYISYFDFYRPEAYLPTKDVYLEKTSKTNFD 123

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++ MR SA  +L+ RND IV++SV+ IYG  + + Y    + L++   ++  EL   L +
Sbjct: 124 LETMRMSALNALMMRNDTIVIASVAAIYGTLNPDEYQDNFLVLEVDQEIKPNELALKLAR 183

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            +Y+   I    G F + GD +EIFP+  +    RV  FGN IE I+  +P++   I++ 
Sbjct: 184 IKYENNQIEQKPGIFSLKGDVLEIFPAWSDAFNIRVEFFGNIIEAINIIHPVSKSIIKSY 243

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
            +  +Y  + Y   +  +N A++ IK EL  +L   EK  +L+E QRL+ R+  D++ L 
Sbjct: 244 NSFTVYPATAYSVKKNIINRAIETIKIELGEQLEFFEKNNKLVEKQRLKDRVNNDIDSLS 303

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENY+R++ GR  GE P +L +Y+P+D L+F+DESH+ I QI GMY GD  RK
Sbjct: 304 EFGICSGIENYARHIDGRQKGEKPFSLLDYLPQDGLIFIDESHIMISQIKGMYEGDRSRK 363

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YG+RLPS +DNRPL+  E+   +   I VSATP S+E+++  G IV QIIRPTGL
Sbjct: 364 QTLVDYGYRLPSALDNRPLKLSEFEKYQQAKIYVSATPASYEIDKTNGEIVSQIIRPTGL 423

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMH 613
           +DP + I S + Q+E ++  +    ++  R L+   TKR+AE++++YL E  ++ V Y+H
Sbjct: 424 IDPEIVIESTKNQMEKIFQYLLKQKEKKERSLILTTTKRLAEEISKYLQEEKLQNVYYLH 483

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+ T ER EII  LR G +D +VGINLLREG+DIPE  L+ +L+A    FLRS++SLIQ
Sbjct: 484 SEMTTFERDEIIIKLRKGIYDAIVGINLLREGVDIPEVSLIFVLEAGLVSFLRSESSLIQ 543

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            IGRAARN + KVIL+ DT+T++I+  + +   +R+ Q+E+N+K+ I P+++K+ I + I
Sbjct: 544 IIGRAARNDHGKVILFTDTVTETIEKVLKDNENKRKIQIEYNQKNKIIPKTIKKPIPDSI 603

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +P  L       IS   ++    KK+ + ++K L K+M +AAD   FEEA +IRD I  +
Sbjct: 604 NPNSL------KISKVLREKQKDKKEMENYIKILEKEMKIAADANRFEEAIQIRDLIAEI 657

Query: 794 K 794
           K
Sbjct: 658 K 658


>gi|71893996|ref|YP_279442.1| excinuclease ABC subunit B [Mycoplasma hyopneumoniae J]
          Length = 659

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/661 (44%), Positives = 431/661 (65%), Gaps = 7/661 (1%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
            K+   F++  +Y PSGDQP AI  L+ GI S +K Q+LLGVTGSGKTFTMA VI    +
Sbjct: 2   EKEFKKFKLVANYKPSGDQPKAIKNLINGIKSGKKSQVLLGVTGSGKTFTMANVIAYFNK 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P I+++ NK LA+QLYSEFK FFP N VE+++SY+D+Y+PEAY+P  D Y+EK S  N  
Sbjct: 62  PVIILSHNKTLASQLYSEFKEFFPENRVEFYISYFDFYRPEAYLPTKDVYLEKTSKTNFD 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++ MR SA  +L+ RND IV++SV+ IYG  + + Y    + L++   ++  EL   L +
Sbjct: 122 LETMRMSALNALMMRNDTIVIASVAAIYGTLNPDEYQDNFLVLEVDQEIKPNELALKLAR 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            +Y+   I    G F + GD +EIFP+  +    RV  FGN IE I+  +P++   I++ 
Sbjct: 182 IKYENNQIEQKPGIFSLKGDVLEIFPAWSDAFNIRVEFFGNIIEAINIIHPVSKSIIKSY 241

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
            +  +Y  + Y   +  +N A++ IK EL  +L   EK  +L+E QRL+ R+  D++ L 
Sbjct: 242 NSFTVYPATAYSVKKNIINRAIETIKIELGEQLEFFEKNNKLVEKQRLKDRVNNDIDSLS 301

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENY+R++ GR  GE P +L +Y+P+D L+F+DESH+ I QI GMY GD  RK
Sbjct: 302 EFGICSGIENYARHIDGRQKGEKPFSLLDYLPQDGLIFIDESHIMISQIKGMYEGDRSRK 361

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YG+RLPS +DNRPL+  E+   +   I VSATP S+E+++  G IV QIIRPTGL
Sbjct: 362 QTLVDYGYRLPSALDNRPLKLSEFEKYQQAKIYVSATPASYEIDKTNGEIVSQIIRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMH 613
           +DP + I S + Q+E ++  +    ++  R L+   TKR+AE++++YL E  ++ V Y+H
Sbjct: 422 IDPEIVIESTKNQMEKIFQYLLKQKEKKERSLILTTTKRLAEEISKYLQEEKLQNVYYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+ T ER EII  LR G +D +VGINLLREG+DIPE  L+ +L+A    FLRS++SLIQ
Sbjct: 482 SEMTTFERDEIIIKLRKGIYDAIVGINLLREGVDIPEVSLIFVLEAGLVSFLRSESSLIQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            IGRAARN + KVIL+ DT+T++I+  + +   +R+ Q+E+N+K+ I P+++K+ I + I
Sbjct: 542 IIGRAARNDHGKVILFTDTVTETIEKVLKDNENKRKIQIEYNQKNKIIPKTIKKPIPDSI 601

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +P  L       IS   ++    KK+ + ++K L K+M +AAD   FEEA +IRD I  +
Sbjct: 602 NPNSL------KISKVLREKQKDKKEMENYIKILEKEMKIAADANRFEEAIQIRDLIAEI 655

Query: 794 K 794
           K
Sbjct: 656 K 656


>gi|144575569|gb|AAZ54010.2| excinuclease ABC subunit B [Mycoplasma hyopneumoniae 7448]
          Length = 661

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/661 (44%), Positives = 430/661 (65%), Gaps = 7/661 (1%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
            K+   F++  +Y PSGDQP AI  L+ GI S +K Q+LLGVTGSGKTFTMA VI    +
Sbjct: 4   EKEFKKFKLVANYKPSGDQPKAIKNLINGIKSGKKSQVLLGVTGSGKTFTMANVIAYFNK 63

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P I+++ NK LA+QLYSEFK FFP N VE+++SY+D+Y+PEAY+P  D Y+EK S  N  
Sbjct: 64  PVIILSHNKTLASQLYSEFKEFFPENRVEFYISYFDFYRPEAYLPTKDVYLEKTSKTNFD 123

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++ MR SA  +L+ RND IV++SV+ IYG  + + Y    + L++   ++  EL   L +
Sbjct: 124 LETMRMSALNALMMRNDTIVIASVAAIYGTLNPDEYQDNFLVLEVDQEIKPNELALKLAR 183

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            +Y+   I    G F + GD +EIFP+  +    RV  FGN IE I+  +P++   I++ 
Sbjct: 184 IKYENNQIEQKPGIFSLKGDVLEIFPAWSDAFNIRVEFFGNIIEAINIIHPVSKSIIKSY 243

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
            +  +Y  + Y   +  +N A++ IK EL  +L   EK  +L+E QRL+ R+  D++ L 
Sbjct: 244 NSFTVYPATAYSVKKNIINRAIETIKIELAEQLEFFEKNNKLVEKQRLKDRVNNDIDSLS 303

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  +ENY+R++ GR  GE P +L +Y+P+D L+F+DESH+ I QI GMY GD  RK
Sbjct: 304 EFGICSGVENYARHIDGRQKGEKPFSLLDYLPQDGLIFIDESHIMISQIKGMYEGDRSRK 363

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YG+RLPS +DNRPL+  E+   R   I VSATP S+E+++  G IV QIIRPTGL
Sbjct: 364 QTLVDYGYRLPSALDNRPLKLSEFEEYRQAKIYVSATPASYEIDKTNGEIVSQIIRPTGL 423

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMH 613
           +DP + I S + Q+E ++  +    ++  R L+   TKR+AE++++YL E  ++ V Y+H
Sbjct: 424 IDPEIVIESTKNQMEKIFQYLLKQKEKKERSLILTTTKRLAEEISKYLQEEKLQNVYYLH 483

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+ T ER EII  LR G +D +VGINLLREG+DIPE  L+ +L+A    FLRS++SLIQ
Sbjct: 484 SEMTTFERDEIIIKLRKGIYDAIVGINLLREGVDIPEVSLIFVLEAGLVSFLRSESSLIQ 543

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            IGRAARN + KVIL+ DT+T++I+  + +   +R+ Q+E+N+K+ I P+++K+ I   I
Sbjct: 544 IIGRAARNDHGKVILFTDTVTETIEKVLKDNENKRKIQIEYNQKNKIIPKTIKKPIPNSI 603

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +P  L       IS   ++    KK+ + ++K L K+M +AAD   FEEA +IRD I  +
Sbjct: 604 NPNSL------KISKVLREKQKDKKEMEDYIKILEKEMKIAADANRFEEAIQIRDLIAEI 657

Query: 794 K 794
           K
Sbjct: 658 K 658


>gi|72080975|ref|YP_288033.1| excinuclease ABC subunit B [Mycoplasma hyopneumoniae 7448]
          Length = 659

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/661 (44%), Positives = 430/661 (65%), Gaps = 7/661 (1%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
            K+   F++  +Y PSGDQP AI  L+ GI S +K Q+LLGVTGSGKTFTMA VI    +
Sbjct: 2   EKEFKKFKLVANYKPSGDQPKAIKNLINGIKSGKKSQVLLGVTGSGKTFTMANVIAYFNK 61

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P I+++ NK LA+QLYSEFK FFP N VE+++SY+D+Y+PEAY+P  D Y+EK S  N  
Sbjct: 62  PVIILSHNKTLASQLYSEFKEFFPENRVEFYISYFDFYRPEAYLPTKDVYLEKTSKTNFD 121

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           ++ MR SA  +L+ RND IV++SV+ IYG  + + Y    + L++   ++  EL   L +
Sbjct: 122 LETMRMSALNALMMRNDTIVIASVAAIYGTLNPDEYQDNFLVLEVDQEIKPNELALKLAR 181

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            +Y+   I    G F + GD +EIFP+  +    RV  FGN IE I+  +P++   I++ 
Sbjct: 182 IKYENNQIEQKPGIFSLKGDVLEIFPAWSDAFNIRVEFFGNIIEAINIIHPVSKSIIKSY 241

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
            +  +Y  + Y   +  +N A++ IK EL  +L   EK  +L+E QRL+ R+  D++ L 
Sbjct: 242 NSFTVYPATAYSVKKNIINRAIETIKIELAEQLEFFEKNNKLVEKQRLKDRVNNDIDSLS 301

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  +ENY+R++ GR  GE P +L +Y+P+D L+F+DESH+ I QI GMY GD  RK
Sbjct: 302 EFGICSGVENYARHIDGRQKGEKPFSLLDYLPQDGLIFIDESHIMISQIKGMYEGDRSRK 361

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL +YG+RLPS +DNRPL+  E+   R   I VSATP S+E+++  G IV QIIRPTGL
Sbjct: 362 QTLVDYGYRLPSALDNRPLKLSEFEEYRQAKIYVSATPASYEIDKTNGEIVSQIIRPTGL 421

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMH 613
           +DP + I S + Q+E ++  +    ++  R L+   TKR+AE++++YL E  ++ V Y+H
Sbjct: 422 IDPEIVIESTKNQMEKIFQYLLKQKEKKERSLILTTTKRLAEEISKYLQEEKLQNVYYLH 481

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+ T ER EII  LR G +D +VGINLLREG+DIPE  L+ +L+A    FLRS++SLIQ
Sbjct: 482 SEMTTFERDEIIIKLRKGIYDAIVGINLLREGVDIPEVSLIFVLEAGLVSFLRSESSLIQ 541

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            IGRAARN + KVIL+ DT+T++I+  + +   +R+ Q+E+N+K+ I P+++K+ I   I
Sbjct: 542 IIGRAARNDHGKVILFTDTVTETIEKVLKDNENKRKIQIEYNQKNKIIPKTIKKPIPNSI 601

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           +P  L       IS   ++    KK+ + ++K L K+M +AAD   FEEA +IRD I  +
Sbjct: 602 NPNSL------KISKVLREKQKDKKEMEDYIKILEKEMKIAADANRFEEAIQIRDLIAEI 655

Query: 794 K 794
           K
Sbjct: 656 K 656


>gi|315931875|gb|EFV10830.1| excinuclease ABC, B subunit [Campylobacter jejuni subsp. jejuni
           327]
          Length = 596

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/578 (51%), Positives = 400/578 (69%), Gaps = 3/578 (0%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+ 
Sbjct: 3   ELTSEFKPSPDQQEAINGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSH 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R S
Sbjct: 63  NKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR D
Sbjct: 123 ATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y 
Sbjct: 183 NFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILYP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S +      L  A+K IK EL  RL   E E +L+E QRL+QR+ +DLEML +TG C+ 
Sbjct: 243 TSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKG 302

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIP-ED--SLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           +ENY+R+LTG   G+ P TLF+Y   +D   L+ VDESHV++PQ  GM+ GD  RK TL 
Sbjct: 303 VENYARHLTGLKEGDTPYTLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS +DNRPL F+E+       + VSATP   ELE  +  I  QI+RPTGL+DP 
Sbjct: 363 DYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLELELSKENIFHQIMRPTGLLDPL 422

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +E++ +  QVE ++DE     Q+  R+L+TVLTK++AE+LT Y  E  I+V+YMHS++  
Sbjct: 423 IELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDIDA 482

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           +ER EIIR LR G FD+L+GINLLREGLD+PE  L+AI+DADKEGFLRS TSLIQT+GRA
Sbjct: 483 IERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRA 542

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
           ARNVN KV+L+   ITKS+Q A+D T  RR+ Q+ +NK
Sbjct: 543 ARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQMAYNK 580


>gi|313678563|ref|YP_004056303.1| excinuclease ABC subunit B [Mycoplasma bovis PG45]
 gi|312950773|gb|ADR25368.1| excinuclease ABC, B subunit [Mycoplasma bovis PG45]
          Length = 669

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/664 (43%), Positives = 417/664 (62%), Gaps = 8/664 (1%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P+GDQP AI +L++GI +  K Q+L GVTGSGKTFT+A VI    RP +
Sbjct: 1   MYSFKLHSTYAPAGDQPKAINELVEGIKNNVKEQVLQGVTGSGKTFTIANVINKFNRPVL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V++ NK LA+QLYSE K FFP N VEYFVSY+DYY+PEAY+P +D+YI+K S  N +ID 
Sbjct: 61  VLSHNKTLASQLYSELKGFFPENKVEYFVSYFDYYRPEAYIPSSDSYIDKTSKRNAEIDS 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SA  S+L RND IVV+SVS IYG  +   Y    + +  G  + + + +  L+K+ Y
Sbjct: 121 MRMSAVNSILSRNDTIVVASVSAIYGALNPYEYENNFMTIHKGQKISRNDFIRMLIKRNY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D     G+F V GD + I P +      RV  FG++IE I   +P+T +  ++    
Sbjct: 181 FRNDANSELGSFAVKGDLVLIQPIYDNSFMIRVDFFGDEIESIKTLHPITKEVFQSYNEF 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++    Y      +   ++  K EL  R+   EK  RLLE QR+++R+  DL+ L   G
Sbjct: 241 LLFPGDAYTVNNDIIKQTVELAKIELDERIAYFEKNNRLLETQRIKERVERDLDSLAEFG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYI-PEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           +C  IENYS YL  R  G+ P TL +Y   ++ ++F+DESH+ +PQ+  M++GD  RK T
Sbjct: 301 TCPGIENYSMYLDNRTFGQRPYTLLDYFHDKNPIVFIDESHMMMPQLRAMFKGDRSRKQT 360

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLR-PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           L +YGFRLPS +DNRPL F+E+        I +SATP  +EL++  GI+    +RPTGL+
Sbjct: 361 LVDYGFRLPSALDNRPLTFDEFETSFDFQKIYISATPDEYELDKTNGIVTTLFVRPTGLL 420

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           +P +E+R A+ Q+ED+YDE+    ++G R L+   TK +AE+LT +  E+N ++ Y+HSE
Sbjct: 421 NPLIEVRPAKGQIEDIYDELQKQKERGERTLILTTTKSLAEELTRFFMEKNEKIAYIHSE 480

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            KT ER EI+R LR G +D +VGINLLREG+D+PE  L+ +LDAD E F RS  SLIQ  
Sbjct: 481 HKTFERNEILRKLRKGIYDCVVGINLLREGIDLPEVSLIMVLDADNESFFRSTRSLIQIT 540

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN N +VI YAD+++KS+   + + +  R+ Q ++N KHNI P+++ + I E I  
Sbjct: 541 GRAARNSNGRVIFYADSVSKSMHETMLQNSEIRQIQEQYNLKHNIIPKTIIKPIPEPIHN 600

Query: 736 ILLEDAAT---TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
             + DA +    N +   Q   LSK +    ++ LRKQM  AA  L++E A  +RD I  
Sbjct: 601 QKMTDAISFYFKNSNSKNQDEKLSKDEL---IEKLRKQMEQAAKELDYERAMEMRDIIIE 657

Query: 793 LKSS 796
           L+  
Sbjct: 658 LREG 661


>gi|13507950|ref|NP_109899.1| excinuclease ABC subunit B [Mycoplasma pneumoniae M129]
 gi|2499098|sp|P75558|UVRB_MYCPN RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|1674323|gb|AAB96268.1| excinuclease ABC subunit B [Mycoplasma pneumoniae M129]
 gi|301633436|gb|ADK86990.1| excinuclease ABC, B subunit [Mycoplasma pneumoniae FH]
          Length = 657

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/671 (43%), Positives = 412/671 (61%), Gaps = 18/671 (2%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + + +KD   F +++++ P+GDQPAAIA+L +    +   Q+LLG TG+GKTFT+A VI+
Sbjct: 1   MKSPTKDSKLFHLKSNFAPTGDQPAAIAKLAEF---QTNEQVLLGATGTGKTFTIANVIQ 57

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            +Q P +V+A NK LA QLY E K  FP+NAVEYF+SY+D+YQPEAY+P    YIEK ++
Sbjct: 58  KVQLPTVVIAHNKTLAGQLYQELKELFPNNAVEYFISYFDFYQPEAYLPAKGVYIEKSAT 117

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +NE+I R+R S   SL  R D IVV SV+ IY   S   ++Q  + L +G      EL +
Sbjct: 118 VNEEIKRLRVSTLHSLSTRKDVIVVGSVASIYPTSSPADFAQYSLWLVVGKEYGLSELKT 177

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            L+   Y      +  G FR  GD +E+FP + +D   R+S F   +E+I+   PLT + 
Sbjct: 178 QLIHLNYVVNKQQLTPGKFRFQGDVVEVFPGYAQDYVLRLSFFDQQLEQIARIDPLTNKV 237

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +  + + K+     Y+  +  L  A+  IK ELK RL   E+      AQRL+    +DL
Sbjct: 238 LETLNSFKLGPADEYIVNQNDLGVALDTIKAELKDRLKYFERLNFPERAQRLQTITEHDL 297

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE-DSLLFVDESHVTIPQISGMYRG 489
             L+  G C  +ENY+R+L  R P   P  +F+Y  + + LL VDESH T+PQI GMY  
Sbjct: 298 ADLKAWGVCSGVENYARHLEHRPPHSKPYNIFDYFTKGEWLLVVDESHQTLPQIKGMYNT 357

Query: 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
           D  RK +L EYGFRLPS +DNRPL +EE+       I VSATP   E++     +VEQ++
Sbjct: 358 DISRKQSLIEYGFRLPSALDNRPLSYEEFRQGINKVIYVSATPREEEIQLSHNNVVEQLV 417

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           RPT L+DP V ++    QVED+  EI    +   R  +TVLT +MAE+LT++L ERNI+V
Sbjct: 418 RPTYLLDPEVIVKPKDNQVEDLVSEIINQRKHNGRTFVTVLTIKMAENLTDFLKERNIKV 477

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
            Y+H ++K LER+ ++ DLR G+++ LVGINLLREGLD+PE  LVAI DAD  G  R + 
Sbjct: 478 AYIHKDIKALERLILLTDLRKGEYECLVGINLLREGLDVPEVSLVAIFDADIPGLPRDER 537

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           SLIQ IGRAARNV+ +VI+YA+TI++ +  AI ET RRR  Q+ +N++H+  P +V++ I
Sbjct: 538 SLIQIIGRAARNVHGRVIMYANTISEQMDKAIKETQRRRTIQMAYNEQHHKTPMTVQKPI 597

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
             +  PI L             +   S+++  A +K L K+M  AA N N+E A  IRD 
Sbjct: 598 T-LNQPIKL-------------KTKSSEQQKAALIKQLTKEMKQAAANQNYELAIEIRDS 643

Query: 790 IKRLKSSPYFQ 800
           I  L+     +
Sbjct: 644 IFELEKQFRGK 654


>gi|291557561|emb|CBL34678.1| Excinuclease ABC subunit B [Eubacterium siraeum V10Sc8a]
          Length = 572

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/549 (53%), Positives = 392/549 (71%), Gaps = 2/549 (0%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F ++++Y P GDQP AI  L  G+   +K Q+LLGVTGSGKTFTMA +IE + RP +
Sbjct: 1   MDKFVLKSNYKPMGDQPQAIDSLANGVLDGDKEQVLLGVTGSGKTFTMANIIEKVNRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++A NK LAAQL SEFK FFP NAVEYFVSYYDYYQPEAY+P TD YIEK+S+IN++IDR
Sbjct: 61  ILAHNKTLAAQLCSEFKEFFPDNAVEYFVSYYDYYQPEAYIPSTDAYIEKDSAINDEIDR 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +L ER D I+V+SVSCIY +GS E Y + ++ ++ G    + +++  LV+ QY
Sbjct: 121 LRHSATAALAERRDVIIVASVSCIYSLGSPEDYRENMLSIREGQERSRDDIIKRLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPS-HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +R D+  IR  FRV GD +E+FP+    D A R+  FG++I+ ISE   +TG+  R    
Sbjct: 181 ERNDMNFIRNKFRVRGDVLEVFPAGSTSDKAIRIEFFGDEIDRISEIDIVTGEVKRRFSH 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           + I+  SHY+  +  L  ++  I+ E++ R+       +L+EAQR+EQR  YD+EML   
Sbjct: 241 VAIFPASHYIVSKARLENSLTEIENEMEERVKFFTDNHKLIEAQRIEQRTRYDMEMLREI 300

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           G+C+ +ENYSR L GR PG  P TL  + P+D L+F+DESHVT+PQ+ GMY GDF RK  
Sbjct: 301 GTCKGVENYSRVLAGRAPGSSPITLMHHFPKDFLMFIDESHVTLPQVRGMYGGDFARKKN 360

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L +YGFRLPS  DNRP+ F+E+  +    I VSATPG +E         EQ+IRPTGL+D
Sbjct: 361 LVDYGFRLPSAYDNRPMNFDEFTSMINQVIYVSATPGEYEKSHAVN-TAEQVIRPTGLLD 419

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P +EI+    Q+ED+Y EIN   ++G  +L+T LTK+MAEDLT Y  +  +++RYMH ++
Sbjct: 420 PIIEIKPVAGQIEDLYSEINERTKKGECVLITTLTKKMAEDLTAYYEKLGVKIRYMHHDI 479

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            ++ER+EIIRDLR+  FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+TSLIQTIG
Sbjct: 480 DSIERMEIIRDLRMHVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIG 539

Query: 677 RAARNVNSK 685
           RAARN   +
Sbjct: 540 RAARNAEGQ 548


>gi|50364873|ref|YP_053298.1| excinuclease ABC subunit B [Mesoplasma florum L1]
 gi|50363429|gb|AAT75414.1| repair endonuclease subunit B [Mesoplasma florum L1]
          Length = 615

 Score =  682 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/612 (48%), Positives = 392/612 (64%), Gaps = 2/612 (0%)

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           MA +I+ + +P +V+A NK LA QLY E   FFP+N VEYFVS +D++QPEAY P TD Y
Sbjct: 1   MANIIKEINKPTLVLAHNKTLAMQLYYELMEFFPNNRVEYFVSNFDFFQPEAYKPATDLY 60

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304
           I K++ IN ++D +R SA  +L   ND IVV+SV+ IY       Y+    +LK G    
Sbjct: 61  INKDARINMELDMLRMSAMNALSISNDTIVVASVAAIYPSQDPVQYASSFFELKTGQKFS 120

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           ++ELL+ LVK  Y R DI    GTF V GD I++ P       +R S+F + IE I    
Sbjct: 121 KRELLTYLVKTGYTRNDIENSPGTFSVKGDVIKVVPGWSLSAMYRFSLFDDHIEMIDMLN 180

Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
            +TG  I  + T+ IY    YVTP   L  A   I+EEL +R+ EL++EG+LLEA+RL+Q
Sbjct: 181 VVTGALIERISTVTIYPAQAYVTPEDKLKQACLNIREELAVRVKELKEEGKLLEAERLDQ 240

Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484
           R  YDLE LE  G C  IENYS +L  R PGE P TL +Y   D L  +DESH+ + Q+ 
Sbjct: 241 RTRYDLESLEEFGFCSGIENYSAHLDFRAPGETPYTLLDYFKGDFLTIIDESHIMVSQVR 300

Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544
           GMY  D  RK TL EYGFRLPS +DNRPL FEE+       I  SATPG +ELE     +
Sbjct: 301 GMYNTDRSRKQTLVEYGFRLPSALDNRPLNFEEFTGKLKQVIYTSATPGDYELELVNHEV 360

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           VEQIIRPTGL+DP +E++    Q+ED+ ++I+   +   ++ +T LT RM+EDLT YL E
Sbjct: 361 VEQIIRPTGLLDPVIEVKKTEGQIEDIIEQIHERKKVNEKVFITTLTIRMSEDLTSYLQE 420

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           RNI+V Y+HSE+KTLER +I+ DLR G +D +VG+NLLREGLD+PE  LV +LDADK+GF
Sbjct: 421 RNIKVAYLHSELKTLERSDILNDLRRGVYDAVVGVNLLREGLDLPEVSLVCVLDADKQGF 480

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
           LR+  SLIQT GRAARN N KVI YADTI+ S+Q A+DET RRRE Q  +NK+HNI P +
Sbjct: 481 LRNTKSLIQTAGRAARNANGKVIFYADTISTSMQEAMDETNRRREIQQAYNKEHNITPVT 540

Query: 725 VKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           + +KI +       +            +    K+  +  +  +R +M  AA +L+FE+AA
Sbjct: 541 ITKKINQSTLSEATKKELEKIKKQKTAKGK--KEAYQKTIDDIRAEMIQAAKDLDFEKAA 598

Query: 785 RIRDEIKRLKSS 796
            +RD I  L++ 
Sbjct: 599 VLRDTIIELEAK 610


>gi|289757735|ref|ZP_06517113.1| excinuclease ABC subunit B [Mycobacterium tuberculosis T85]
 gi|289713299|gb|EFD77311.1| excinuclease ABC subunit B [Mycobacterium tuberculosis T85]
          Length = 535

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/530 (56%), Positives = 391/530 (73%), Gaps = 1/530 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 7   FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 67  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           R+E++R LRLG +DVLVGINLLREGLD+PE  LVAILDADKEGFLRS  +
Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSAAA 535


>gi|237719444|ref|ZP_04549925.1| LOW QUALITY PROTEIN: excinuclease ABC subunit B [Bacteroides sp.
           2_2_4]
 gi|229451304|gb|EEO57095.1| LOW QUALITY PROTEIN: excinuclease ABC subunit B [Bacteroides sp.
           2_2_4]
          Length = 615

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/595 (48%), Positives = 408/595 (68%), Gaps = 14/595 (2%)

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RND 271
            K FFP+NAVEY+VSYYDYYQPEAY+P +DTYIEK+ +IN++ID++R SAT +LL  R D
Sbjct: 14  LKVFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKLRLSATSALLSGRKD 73

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +VVSSVSCIYG+G+   + + +++++ G  +++   L  LV   Y R DI + RG FRV
Sbjct: 74  VVVVSSVSCIYGMGNPSDFYKNVIEIERGRMMDRNVFLRRLVDSLYVRNDIDLNRGNFRV 133

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD+++I+ ++ +++  RV+ +G++I+ I E  P+TG  I   +  KIY  + ++T +  
Sbjct: 134 KGDTVDIYLAYTDNL-LRVTFWGDEIDGIEEVDPITGVTIAPFDAYKIYPANLFMTTKEA 192

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
              A+  I+++L  ++   E  GR  EA+RL +R+TYD+EM+   G C  IENYSRY  G
Sbjct: 193 TLRAIHEIEDDLTKQVAFFESIGREYEAKRLYERVTYDMEMIRELGHCSGIENYSRYFDG 252

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
           R  G  P  L ++ P+D L+ +DESHV++PQI  MY GD  RK  L EYGFRLP+ MDNR
Sbjct: 253 RAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLVEYGFRLPAAMDNR 312

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           PL+FEE+  +    I VSATP  +EL Q +GI+VEQ+IRPTGL+DP +E+R +  Q++D+
Sbjct: 313 PLKFEEFQEMAKQVIYVSATPADYELIQSEGIVVEQVIRPTGLLDPIIEVRPSLNQIDDL 372

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +EI L  ++  R+L+T LTKRMAE+L EYL   N+R  Y+HS+V TLER++I+ DLR G
Sbjct: 373 MEEIQLRIEKEERVLVTTLTKRMAEELAEYLLNNNVRCTYIHSDVDTLERVKIMDDLRQG 432

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
            +DVL+G+NLLREGLD+PE  LVAILDADKEGFLRS  SL QT GRAARNVN KVI+YAD
Sbjct: 433 VYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAARNVNGKVIMYAD 492

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE----------KIMEVI--DPILLE 739
            +T S++L IDET RRREKQL +N+ + I PQ +K+          K  + +  +     
Sbjct: 493 KMTDSMKLTIDETNRRREKQLAYNEANGITPQQIKKARNLSVFGNAKEADELLKERHAYV 552

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
           + +T NI+ D     +SK + +  ++  RK M  AA  L F EAA+ RDE+ +L+
Sbjct: 553 EPSTPNIAADPIVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAAQYRDELLKLE 607


>gi|157962112|ref|YP_001502146.1| excinuclease ABC subunit B [Shewanella pealeana ATCC 700345]
 gi|157847112|gb|ABV87611.1| excinuclease ABC, B subunit [Shewanella pealeana ATCC 700345]
          Length = 661

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/589 (48%), Positives = 399/589 (67%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y PSGDQP AIA+L+ GI S    Q L GVTGSGKTFT+A +I  ++RP I++A
Sbjct: 6   FILHSNYTPSGDQPEAIARLVDGIDSGSSHQTLKGVTGSGKTFTVANIIHRLKRPTIILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSE ++FFP NAVE+FVSYYDYYQPE Y+P +D +I K+S+INE ++R+R 
Sbjct: 66  HNKTLAAQLYSEMRHFFPENAVEFFVSYYDYYQPEVYLPGSDRFIRKDSAINEHLERLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T++L+ER D IVV+SVS IYG+G  ++Y  + V+L +G  ++  +L+  L + QY R 
Sbjct: 126 STTKALIERRDVIVVASVSSIYGLGDPDAYRSLQVKLWLGQEIDLDDLIQRLERLQYTRC 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  I R TF V    I+IFP+  E  A  V +    + ++     ++GQ++  +    + 
Sbjct: 186 NRTINRATFLVREGVIDIFPADSEHQALTVEIEAGRVNQLYWIDAISGQQLETIAEYCVS 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y      +  A   I  +++ ++  L  + RL EA RL +R   DLE+L   G C 
Sbjct: 246 PKTLYSVSIEQVELACGQIMSDMEQQVAILNADNRLTEAARLYERTVSDLELLRLQGYCP 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+ YL  R+P  PP TLF+Y+P+D LLF+DESHV IPQIS MY+ D  RK TL ++
Sbjct: 306 GIENYASYLNQRDPQLPPTTLFDYLPKDGLLFIDESHVMIPQISAMYKSDQSRKNTLIDF 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  +NRPL F E+  ++P TI VSATP ++EL + +  + +QIIRPTGL+DP +E
Sbjct: 366 GFRLPSARNNRPLSFTEFESIKPQTIFVSATPSNYELSKSKQQVFKQIIRPTGLLDPEIE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR +   +ED+  EI L   +  R L+T LTK+ AE L ++L  + I+V Y+HS++KT +
Sbjct: 426 IRPSDNNLEDLVQEIALRLARNERTLVTTLTKKSAESLNDFLSAKGIKVSYLHSDIKTND 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EII+ LR+G+ DVL+GINLLREGLDIPE  LVA+LDAD  GFLRS+ +LIQ IGRAAR
Sbjct: 486 RVEIIKALRVGEIDVLIGINLLREGLDIPEASLVAVLDADTAGFLRSEQALIQIIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           N N K ILYAD +T ++Q AIDE+  RR  Q+ +N  + I P S K ++
Sbjct: 546 NENGKAILYADKVTTAMQSAIDESAERRGHQIIYNMANGIVPSSSKRRL 594


>gi|13357677|ref|NP_077951.1| excinuclease ABC subunit B [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762298|ref|YP_001752203.1| excinuclease ABC subunit B [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920171|ref|ZP_02931560.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508818|ref|ZP_02958272.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186702003|ref|ZP_02971622.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|21542297|sp|Q9PR24|UVRB_UREPA RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|238688162|sp|B1AIA9|UVRB_UREP2 RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
           Full=Excinuclease ABC subunit B
 gi|11278008|pir||C82932 excinuclease ABC subunit B UU120 [imported] - Ureaplasma
           urealyticum
 gi|6899077|gb|AAF30526.1|AE002112_7 excinuclease ABC subunit B [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827875|gb|ACA33137.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902546|gb|EDT48835.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182675781|gb|EDT87686.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186700781|gb|EDU19063.1| excinuclease ABC, B subunit [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 666

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/662 (46%), Positives = 419/662 (63%), Gaps = 9/662 (1%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           D   F++ +DY P+GDQ  AI +++  I+   + Q+LLG TG+GKTF++A VI   Q   
Sbjct: 3   DFKKFELISDYKPAGDQQKAIDEMVNNINQGIQRQVLLGATGTGKTFSVANVIAKTQLKT 62

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+A NK LAAQL++E K  FPHN VEYFVSY+DYYQPEAY P TDTYIEK+S  N +I+
Sbjct: 63  LVLAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIE 122

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            MR S   SL  RND IVV+SV+CIY   S   +++  + L +G+ +E +++   LV+  
Sbjct: 123 MMRLSTINSLATRNDVIVVASVACIYASVSPIEFTKKNLYLHVGELIEFEQIKYKLVQLG 182

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R+D  ++ GTFR+ GD IEI   + +    R+SMFGN++E I    P+T   I   + 
Sbjct: 183 YERKDYDLVPGTFRIRGDLIEIMSGYSDKFKIRISMFGNEVESIDLCDPITNNIISKEQR 242

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
             + + S Y+     L  A++ IK EL  R+    K  +L+EAQR+EQR   DLE +   
Sbjct: 243 FILRSASEYIFDDSRLAIAIENIKNELDERVKFFLKNNQLIEAQRIEQRTKQDLESIVEF 302

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRGDFHR 493
           G C  +ENY R+L  R P + P T+F++     +D LL VDESH+++PQ+ GM+  D  R
Sbjct: 303 GFCSGVENYYRHLEHREPFQTPWTIFDFFSYNNQDWLLIVDESHISLPQVKGMHNTDRSR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL EYGFRLPS +DNRPL ++E+N     TI VSATP   E+      IV QI+RPTG
Sbjct: 363 KQTLVEYGFRLPSALDNRPLNYDEFNKKLSKTIYVSATPNDEEIALSDNHIVSQIVRPTG 422

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+DP +EIR    Q++D+ +E+ L   +  R  +TV+T RMAEDLT YL    I+  Y+H
Sbjct: 423 LLDPIIEIRKTEHQIDDLINELMLLKNKNQRAFITVMTIRMAEDLTNYLNNTKIKAAYLH 482

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +E+KTLER  II  LR G +D +VGINLLREGLD+PE   V I DADK GF RS  SLIQ
Sbjct: 483 NELKTLERSVIINKLRKGIYDCVVGINLLREGLDVPEVAGVFIFDADKPGFFRSDKSLIQ 542

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
            IGRAARN + KVI+YAD IT+++Q AI+ET RRRE QL  N KHNI P+++ + I E +
Sbjct: 543 IIGRAARNADGKVIMYADVITQAMQTAINETKRRREIQLAFNLKHNIIPKTIIKPIHEDL 602

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
                +  A    +        SK +    +K L+K+M  AA    +E AA+ RD I  L
Sbjct: 603 SGHDYKQNAELYAA------KASKNEYNQKIKELKKKMEEAAKKREYEVAAQYRDMIVEL 656

Query: 794 KS 795
           ++
Sbjct: 657 EA 658


>gi|167623929|ref|YP_001674223.1| excinuclease ABC subunit B [Shewanella halifaxensis HAW-EB4]
 gi|167353951|gb|ABZ76564.1| excinuclease ABC, B subunit [Shewanella halifaxensis HAW-EB4]
          Length = 664

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/663 (45%), Positives = 431/663 (65%), Gaps = 6/663 (0%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           ++N       F + + Y PSGDQP AIA+L+ GI S    Q L GVTGSGKTFT+A +I 
Sbjct: 1   MSNSLLSQNKFILHSSYLPSGDQPEAIARLIDGIESGASHQTLKGVTGSGKTFTVANIIH 60

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            ++RP I++A NK LAAQLYSE ++FFP NAVE+FVSYYDYYQPE Y+P +D +I K+S+
Sbjct: 61  RLKRPTIILAHNKTLAAQLYSEMRHFFPENAVEFFVSYYDYYQPEVYLPGSDRFIRKDSA 120

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN  ++R+R S T++L+ER D IVV+SVS +YG+G  ++Y  + V+L +G ++E +EL+ 
Sbjct: 121 INAHLERLRLSTTKALIERRDVIVVASVSSVYGLGDPDAYRSLQVKLSLGQAIETEELIE 180

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            L + QY R +  I R TF V   +++IFP+  E  A  + +    + ++     ++G+K
Sbjct: 181 RLERLQYGRCNRTIKRATFLVRDGAVDIFPADSEHKALTLELDDGHLNKLYWIDAVSGEK 240

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           + +V+   +   + Y      ++ A + I +++++++  L  E RL EA RL +R   DL
Sbjct: 241 LADVDEYYVSPKTLYSVSVEQVDLACEQIMKDMELQVASLSAENRLTEAARLYERTVSDL 300

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           E+L   G C  IENY+ YL  R+P  PP TLF+Y+P+D LLF+DESHV +PQIS MY+ D
Sbjct: 301 ELLRLQGYCPGIENYASYLNQRDPKLPPTTLFDYLPKDGLLFIDESHVMVPQISAMYKSD 360

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK TL ++GFRLPS  +NRPL F+E+  ++P TI VSATPG +EL +    I +QIIR
Sbjct: 361 QSRKNTLIDFGFRLPSARNNRPLSFDEFESIKPQTIFVSATPGRYELSKSNSHIFKQIIR 420

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DP +EIR +   ++D+  EI L   +  R L+T LTK+ AE L +++  R I+V 
Sbjct: 421 PTGLLDPEIEIRPSENNLKDLVKEIELRVARNERTLVTTLTKKSAEALNDFIAARGIKVS 480

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HS+VKT +R+EII  LR G+ DVL+GINLLREGLDIPE  LVA+LDAD  GFLRS+ +
Sbjct: 481 YLHSDVKTNDRVEIINALRAGELDVLIGINLLREGLDIPEASLVAVLDADHAGFLRSEQA 540

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQ IGRAARN N K ILYAD +T ++Q AIDE++ RR  Q+ +N  + I P S K K+ 
Sbjct: 541 LIQIIGRAARNENGKAILYADKMTFAMQKAIDESSERRGHQMLYNMANGIVPSSSKRKLD 600

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                   + A     S+D  +   S  +    + +  K++    D    E+A  IR+++
Sbjct: 601 S------GDQAHVVVGSVDRAKFCESLSELCRQITAKEKELLQLVDEEGAEQAKLIREQL 654

Query: 791 KRL 793
             L
Sbjct: 655 IVL 657


>gi|291333201|gb|ADD92912.1| excinuclease ABC subunit B [uncultured archaeon
           MedDCM-OCT-S02-C115]
          Length = 761

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/746 (39%), Positives = 432/746 (57%), Gaps = 82/746 (10%)

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA 191
              S D+  F++ +++ P+GDQ +AI +L+  + + ++  +LLGVTGSGKTF MA +IE 
Sbjct: 17  ERLSPDVARFRIHSEHLPAGDQESAIEKLVSQLENNQERCVLLGVTGSGKTFAMAHIIER 76

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           +  P ++++ NK LA QL+ E    FP N VEYFVS+YDYYQPEAY+P+ D YI+KE SI
Sbjct: 77  LNIPTLIISHNKTLARQLHQEMAGLFPENGVEYFVSHYDYYQPEAYLPKRDLYIDKELSI 136

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           NE+I++ R +   SL+ R DCIVVSSVSCIYG+ + E++     ++  G  +E  +L+  
Sbjct: 137 NERIEQERFATVASLVSRPDCIVVSSVSCIYGLNAPETFLAYHCRIHTGQEIEPIDLIRE 196

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV  QY R    + RG  R+ G++++++    +D   RV      +E I    P+T + +
Sbjct: 197 LVALQYTRTSSDLKRGEVRLRGENLDVWMPSRDD-PLRVRFGFEGVEHIQICDPVTWEIL 255

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
             ++   I+    ++        A++ I+ EL  R+ EL+ E + LEA RLEQR  YDLE
Sbjct: 256 DELDEAWIHPKEFFMVSPERFEAALENIETELDGRVAELKSESKELEANRLEQRTRYDLE 315

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI----------PEDSLLFVDESHVTIP 481
           ML   G C ++ENYS +  GR  GE P  L ++           P++ L+ +DESHVT+P
Sbjct: 316 MLREIGHCTAVENYSMHFDGREHGERPYCLLDFFAATAKQFHGNPDNFLVIMDESHVTLP 375

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL---- 537
           Q+ GMY GD  RK  L E+GFRLPS  DNRPL+ +E+  L P  + VSATPG  EL    
Sbjct: 376 QVGGMYAGDRSRKLNLIEHGFRLPSAADNRPLKQKEFQKLVPQMLYVSATPGERELLHLC 435

Query: 538 -----------------------EQCQGI-----------IVEQI----IRPTGLVDPPV 559
                                  E  +             ++E+I    IRPTGL+DP +
Sbjct: 436 EVTGQDAPLGLRHMAGGGGVDEPEYSKKHPDAESMYDMLQMIEEIPRMEIRPTGLLDPTI 495

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E+R    QV D+  EIN   + G R L+TVLT + AE++ +YL +  I+  ++HSE+ T+
Sbjct: 496 EVRDTEGQVADLLSEINARIKVGERTLVTVLTIKFAEEVAQYLNKMGIKAHHLHSEIDTI 555

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER EII  LR+G  D +VGINLLREGLDIPE  LVAI DAD++GFLR++ SL+QTIGRAA
Sbjct: 556 ERTEIINALRIGHIDTIVGINLLREGLDIPEVSLVAIFDADRQGFLRNERSLLQTIGRAA 615

Query: 680 RNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK-------IMEV 732
           RN N KVILYAD+++  +  +I +T  RRE+Q+ HN+++ I P ++++        + ++
Sbjct: 616 RNSNGKVILYADSMSPPMTASIRQTLERRERQIAHNEENGIIPTTIQKALPKMGSDVDDL 675

Query: 733 IDPILLEDAA------------TTNISIDAQQLSLSK----------KKGKAHLKSLRKQ 770
           I                       N+++ A Q S S           ++    ++ L++ 
Sbjct: 676 IAGTSGGKRLVGSKGGRKGGDWANNLNVGAGQWSRSDSVASNISQPIEEIDYSIEELKEM 735

Query: 771 MHLAADNLNFEEAARIRDEIKRLKSS 796
           M  AA  L+FE AA +RD+I  ++SS
Sbjct: 736 MQQAALELDFERAAMLRDKILEIQSS 761


>gi|149189665|ref|ZP_01867947.1| excinuclease ABC subunit B [Vibrio shilonii AK1]
 gi|148836477|gb|EDL53432.1| excinuclease ABC subunit B [Vibrio shilonii AK1]
          Length = 658

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/595 (48%), Positives = 414/595 (69%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y PSGDQP AIA+L+ GI + +  Q L GVTGSGKTFTMA +I  ++RP +++A
Sbjct: 6   FILHSAYPPSGDQPEAIARLISGIEAGKSHQTLQGVTGSGKTFTMANIIHRLKRPTLILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA+QLYSE  +FFP NAVEYFVSYYDY+QPE Y+P +D +I K+S+INEQ++R+R 
Sbjct: 66  HNKTLASQLYSEMCHFFPENAVEYFVSYYDYFQPEVYIPGSDRFIRKDSAINEQLERLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+SL+ER D IVV+SVS +YG+G  ++Y  + + L +G+++++ +L   L + QY   
Sbjct: 126 SATKSLIERRDVIVVASVSSVYGLGDPQAYRDLQISLAVGEALDKADLAERLARLQYTLT 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  + R  FR+ GD I++FP+     A R+++    I+ +    P+ G  +++    KI 
Sbjct: 186 EPKLERAGFRIRGDKIDVFPADSAQDAIRITLNNGVIQHLDWVDPIAGTLLKSCTEYKIS 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y +    +  A + I+ E++ R+ EL +E RL EA RL +R  +D+EM++  G C 
Sbjct: 246 PKTLYASSPQKVRKASELIRIEMEQRVKELNEENRLTEAARLYERCMHDIEMMQQYGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENY+ YL  R+P  PP TL +Y+P+D L+F+DESHV +PQIS M + D  RK TL +Y
Sbjct: 306 GIENYACYLNERDPELPPTTLMDYLPKDGLVFIDESHVMVPQISAMSKSDLSRKDTLIDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS ++NRPL F E+   +P TI VSATPG +E+++  G++VEQIIRPTGL+DP VE
Sbjct: 366 GFRLPSALNNRPLTFNEFEKAKPQTIFVSATPGKYEVQRSGGVVVEQIIRPTGLLDPEVE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R +   +ED+  EI        R+L+T LTK  AE L +++ E+ IRVRY+HS++KT E
Sbjct: 426 VRPSANNMEDLLKEIRQRTSNDERVLVTTLTKVSAESLNDHMAEQGIRVRYLHSDIKTSE 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R++II  LR G+FDVL+GINLLREGLDIPE  LVAILDAD  GFLRS  +LIQ IGRAAR
Sbjct: 486 RVDIINGLRAGEFDVLIGINLLREGLDIPEASLVAILDADHAGFLRSVEALIQIIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           N N K ILYAD IT +++ AIDE+ +RR++Q  +N+ + I P + + K+   ++ 
Sbjct: 546 NANGKAILYADRITPAMKQAIDESLQRRKRQQVYNQANAIVPATSRRKVASAMEE 600


>gi|260221137|emb|CBA29402.1| UvrABC system protein B [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 537

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/534 (53%), Positives = 375/534 (70%), Gaps = 7/534 (1%)

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           +S IYGIG  ESY QM++ L++GD + Q+++++ LV+ QY+R D+   RG FRV GD+I+
Sbjct: 1   MSAIYGIGKPESYHQMVMTLRVGDKLGQRDMIAQLVRMQYQRNDMDFSRGAFRVRGDTID 60

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP+   ++A RV +F ++IE +  F PLTG+  + +    +Y +SHYVTPR  +  A++
Sbjct: 61  IFPAEHSEMAIRVELFDDEIESLQLFDPLTGRIRQKIPRFTVYPSSHYVTPRDQVLAAVE 120

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            IK EL  RL EL   G+L+EAQRLEQR  +DLEML   G C+ IENYSR+L+G  PGEP
Sbjct: 121 TIKTELSDRLKELVSAGKLVEAQRLEQRTRFDLEMLSEVGHCKGIENYSRHLSGSAPGEP 180

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           P TL +Y+P+D+L+F+DESHV I Q  GMY GD  RK TL EYGFRLPS +DNRPL+FEE
Sbjct: 181 PSTLTDYLPKDALMFLDESHVLIGQFGGMYNGDRARKTTLVEYGFRLPSALDNRPLKFEE 240

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           +       + VSATP  WE E   G +VEQ++RPTGLVDP VE+R A TQV+DV  EI +
Sbjct: 241 FETKMRQVVFVSATPAQWENEHA-GQVVEQVVRPTGLVDPEVEVRPAGTQVDDVLQEIRI 299

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              +  R+L+T LTKRMAE LT+YL +  ++VRY+HS+V T+ER+EI+RDLRLG FDVLV
Sbjct: 300 RVDKNERVLITTLTKRMAEQLTDYLTDNGVKVRYLHSDVDTVERVEILRDLRLGTFDVLV 359

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           GINLLREGLDIPE  LVAILDADKEGFLRS+ SLIQTIGRAARN+  K ILYAD IT S+
Sbjct: 360 GINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLEGKAILYADKITDSM 419

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID------AQ 751
           + AI ET RRR+KQ+ HN +  I P+++ +K+ ++ID +  E A      ++      AQ
Sbjct: 420 ERAIGETERRRKKQIAHNLERGITPKAIVKKVRDLIDGVYSEKAGKEAERLERDAQQRAQ 479

Query: 752 QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
              +S+K     +K L K M   A NL FE+AAR+RD++  LK   +     D+
Sbjct: 480 VEDMSEKDISREIKRLEKLMMEHARNLEFEKAARVRDQLTILKEQAFGAPGADN 533


>gi|261495003|ref|ZP_05991471.1| excinuclease ABC subunit B [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309319|gb|EEY10554.1| excinuclease ABC subunit B [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 531

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/527 (53%), Positives = 378/527 (71%), Gaps = 7/527 (1%)

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           ++SVS IYG+G V++Y QM++ L++G  + Q+E+LS L + QY R D    R TFRV GD
Sbjct: 1   MASVSAIYGLGDVDAYMQMMLHLQVGAMIGQREILSRLAELQYTRNDQAFQRSTFRVRGD 60

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I+I+P+  ++VA RV +F ++IE +S F PLTG+ +  V    IY  +HYVTPR  +  
Sbjct: 61  VIDIYPAESDEVALRVELFDDEIENLSLFDPLTGRSLGKVPRYTIYPKTHYVTPRERILE 120

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A++ IK EL  R     KE +LLE QR+ QR  +D+EM+   G C  IENYSRYL+GR  
Sbjct: 121 AIEQIKVELADRRTYFIKENKLLEEQRIAQRTQFDIEMMNELGYCSGIENYSRYLSGRKE 180

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
           GE PPTLF+Y+P D +L +DESHVT+PQI GMYRGD  RK TL +YGFRLPS +DNRPLR
Sbjct: 181 GEAPPTLFDYMPADGILVIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLR 240

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP +E+R   TQV+D+  E
Sbjct: 241 FEEFERLSPQTIYVSATPGAYELEK-NPDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE 299

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I+       R+L+T LTK+MAEDLT+YL E  +RVRY+HS++ T+ER+EII DLR+G FD
Sbjct: 300 IHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVERVEIIHDLRMGMFD 359

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAARN+N K ILY D IT
Sbjct: 360 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRIT 419

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID------PILLEDAATTNISI 748
            S+Q AI ET RRREKQ+++N++H I PQ++ +K+ E++D      P   + A     + 
Sbjct: 420 NSMQKAITETERRREKQMKYNEEHGITPQALNKKVGELLDIGQSVKPKRGKQAVKKAENS 479

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                  S+K+ +  LK+L +QM   A +L FE+AA +RD++++LK+
Sbjct: 480 ATDYKPKSRKELEKELKTLEQQMRDFAKDLEFEKAAAVRDKLQQLKA 526


>gi|329577601|gb|EGG59034.1| excinuclease ABC, B subunit [Enterococcus faecalis TX1467]
          Length = 523

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/523 (51%), Positives = 364/523 (69%), Gaps = 1/523 (0%)

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           +V+SVSCI+G+G    YSQ +V L++G  +++ ELL SLV  Q++R DI   RG FRV G
Sbjct: 1   MVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKSLVDIQFERNDIDFQRGRFRVRG 60

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D +EIFP+  ++ A RV  FG++I+ I E   LTG+ +   E + I+  +H+VT    + 
Sbjct: 61  DVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIVGETEHVAIFPATHFVTNEEHME 120

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A+  I+EEL+ RL  L  E +LLEAQRLEQR  YD+EM+   G    IENYSR++ GR 
Sbjct: 121 HAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMREMGYTSGIENYSRHMDGRQ 180

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
            GEPP TL ++ P+D LL +DESHVT+PQI GMY GD  RK  L +YGFRLPS +DNRPL
Sbjct: 181 EGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQMLVDYGFRLPSALDNRPL 240

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
           R EE+       + VSATPG +E+EQ +  +V+QIIRPTGL+DP VEIR    Q++D+  
Sbjct: 241 RLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLLDPEVEIRPIMGQIDDLVG 299

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           EI+   ++  R+ +T LTK+MAEDLT+Y  E  ++V+Y+HS+VKTLER EIIRDLRLG+F
Sbjct: 300 EIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSDVKTLERTEIIRDLRLGEF 359

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           D+L+GINLLREG+D+PE  L+AILDADKEGFLRS+ SL+QT+GRAARN   KVI+YAD I
Sbjct: 360 DILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAARNAEGKVIMYADKI 419

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           T S+Q A+DET RRR  Q  +N++H I P+++ ++I ++I      D   T + +D    
Sbjct: 420 TDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTADKDETVVQLDKSYE 479

Query: 754 SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            LS+++    L  L ++M  AA  L+FE AA +RD I  LK++
Sbjct: 480 DLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKAA 522


>gi|213580239|ref|ZP_03362065.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 516

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/510 (54%), Positives = 355/510 (69%), Gaps = 8/510 (1%)

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
           ++ L +G  ++Q+ +L  L + QY R D    RGTFRV G+ I+IFP+  +D+A RV +F
Sbjct: 1   MLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 60

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
             ++E +S F PLTGQ    V    IY  +HYVTPR  +  AM+ IK+EL  R   L   
Sbjct: 61  DEEVERLSLFDPLTGQVESTVPRYTIYPKTHYVTPRERILQAMEEIKDELADRRKVLLAN 120

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
            +LLE QRL QR  +DLEM+   G C  IENYSR+L+GR PGEPPPTLF+Y+P D LL V
Sbjct: 121 NKLLEEQRLSQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 180

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
           DESHVTIPQI GMYRGD  RK TL EYGFRLPS +DNRPL+FEE+  L P TI VSATPG
Sbjct: 181 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 240

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
           ++ELE+    +V+Q++RPTGL+DP +E+R   TQV+D+  EI   A    R+L+T LTKR
Sbjct: 241 NYELEKSGDEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 300

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAEDLTEYL E   RVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  L
Sbjct: 301 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 360

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           VAILDADKEGFLRS+ SLIQTIGRAARNVN K ILY D IT S+  AI ET RRREKQ +
Sbjct: 361 VAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQK 420

Query: 714 HNKKHNINPQSVKEKIMEVI--------DPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
           +N++H I PQ + +K+++++             +    +       +L ++ K  +  + 
Sbjct: 421 YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIH 480

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            L +QM   A NL FEEAA+IRD++ +L+ 
Sbjct: 481 ELEEQMMQHAQNLEFEEAAQIRDQLHQLRE 510


>gi|298525129|ref|ZP_07012538.1| excinuclease ABC [Mycobacterium tuberculosis 94_M4241A]
 gi|298494923|gb|EFI30217.1| excinuclease ABC [Mycobacterium tuberculosis 94_M4241A]
          Length = 578

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/571 (50%), Positives = 388/571 (67%), Gaps = 10/571 (1%)

Query: 95  SEQTMTPSVQAL-ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQ 153
           S   ++     L      +++P++ + +        ++    +    F++ + + P+GDQ
Sbjct: 7   SPHGVSAGGSRLVGVAFATEHPVVAHSEY------RAVEEIVRAGGHFEVVSPHAPAGDQ 60

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
           PAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMAPNK LAAQL +E 
Sbjct: 61  PAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMAPNKTLAAQLANEL 120

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RHSAT +LL R D +
Sbjct: 121 REMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRHSATSALLSRRDVV 180

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R D+   RG+FRV G
Sbjct: 181 VVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRNDMSFTRGSFRVRG 240

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+  +HYV     + 
Sbjct: 241 DTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIFPATHYVAGPERMA 299

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C  IENYSR++ GR 
Sbjct: 300 HAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCSGIENYSRHIDGRG 359

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
           PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EYGFRLPS  DNRPL
Sbjct: 360 PGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEYGFRLPSACDNRPL 419

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
            +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V ++  + Q++D+  
Sbjct: 420 TWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVVVKPTKGQIDDLIG 479

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK- 632
           EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL R+E++R L     
Sbjct: 480 EIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLRRVELLRQLASWVN 539

Query: 633 FDVLVGINL-LREGLDIPECGLVAILDADKE 662
           +DV        REGLD+PE  LV ILDA K+
Sbjct: 540 YDVAGRHQAGFREGLDLPEVSLVPILDATKK 570


>gi|289574301|ref|ZP_06454528.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis K85]
 gi|289538732|gb|EFD43310.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis K85]
          Length = 510

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/504 (55%), Positives = 369/504 (73%), Gaps = 1/504 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 7   FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 67  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLRE 644
           R+E++R LRLG +DVLVGINLLRE
Sbjct: 486 RVELLRQLRLGDYDVLVGINLLRE 509


>gi|308049035|ref|YP_003912601.1| excinuclease ABC, B subunit [Ferrimonas balearica DSM 9799]
 gi|307631225|gb|ADN75527.1| excinuclease ABC, B subunit [Ferrimonas balearica DSM 9799]
          Length = 662

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/647 (43%), Positives = 408/647 (63%), Gaps = 4/647 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + + PSGDQP AIA+L++G  +    Q+L GVTGSGKT+TMA +I  ++RP +++A
Sbjct: 6   FTLHSRFPPSGDQPQAIARLVQGFEAGHSHQILKGVTGSGKTYTMASLIARLKRPTLILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY E   FFP NAV +FVSYYDYYQPE Y+P +DT+I K++S+N +++R+R 
Sbjct: 66  HNKTLAAQLYEEMLGFFPDNAVHFFVSYYDYYQPEVYLPASDTFIRKDASVNARLERLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           + T++L+ER D +V++SVS IYG+G    Y  M + L+    +E + L S L + QY+R 
Sbjct: 126 ATTKALIERPDVVVIASVSSIYGLGDPNQYRAMQIHLEPQQKLEPESLFSQLARLQYQRS 185

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  I   T+R     I+IFP+  +  A R+ +  + +  +    P +   +  +   ++ 
Sbjct: 186 DKKISPATYRADARGIDIFPADSDHDAIRLQIENDTLVSLQRLEPASDTLLGPLSEYRVS 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             + Y  P+  +  A+  I+ EL  RL  L  + +  EA RLE+R+  DLE +   G C 
Sbjct: 246 PKTLYAVPQDRIQQALPAIESELIDRLNALRAQHQFTEAGRLEERVRLDLEDMAQQGYCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            +ENY+RYL  R+P  PP TL +Y+P++ +L +DESHV +PQI  M RGD  RK TL +Y
Sbjct: 306 GMENYTRYLNERDPNRPPTTLLDYLPKNGVLMIDESHVMVPQIGAMQRGDAARKQTLIDY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL F E+  ++P T+ VSATPG +EL +     VEQIIRPTGL+DP VE
Sbjct: 366 GFRLPSSLDNRPLTFAEFESIKPQTLFVSATPGEYELRRSVTEPVEQIIRPTGLLDPVVE 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q+ DV +EI        R L+T LTK  AE LTE L +  I+  Y+HS++ T +
Sbjct: 426 VRPKGDQMTDVQNEIRRRIAHDRRTLITTLTKASAEALTEQLKQAGIKAHYLHSDIVTAD 485

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ I++DLR G +DVL+GINLLREGLD+PE  LVAI DADK GFLRS+ +L+QTIGRAAR
Sbjct: 486 RVAILKDLRRGVYDVLIGINLLREGLDLPEVSLVAIFDADKAGFLRSEAALLQTIGRAAR 545

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N +   ILY D  T ++Q AID+T  RR +Q  +N+ + I PQ+   KI++  D +L  +
Sbjct: 546 NADGMAILYGDKTTDAMQQAIDQTRERRTRQQRYNQTNGITPQTPSRKILDD-DEMLAPN 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                +   AQ  +L   +    ++ +  +M  A    + E  A +R
Sbjct: 605 PHEQPLMAPAQCQNL--HQLCDQIRQVETRMLEAIAQGD-EREAALR 648


>gi|240144767|ref|ZP_04743368.1| excinuclease ABC, B subunit [Roseburia intestinalis L1-82]
 gi|257203290|gb|EEV01575.1| excinuclease ABC, B subunit [Roseburia intestinalis L1-82]
          Length = 525

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/523 (50%), Positives = 357/523 (68%), Gaps = 3/523 (0%)

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           IVV+SVSCIYG+GS E Y  M+V L+ G   ++ +++ +LV  QY R D+   RGTFRV 
Sbjct: 1   IVVASVSCIYGLGSPEDYLGMMVSLRPGMEKDRDDVIRALVDIQYTRNDMDFHRGTFRVR 60

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD++EIFP++  D A RV  FG++I+ I+E   LTG+    +E   ++  SHYV P+  +
Sbjct: 61  GDTLEIFPANYGDTAVRVEFFGDEIDRITEVDVLTGEIKCELEHFAVFPASHYVVPQEKI 120

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
             A   I++EL  R+   + E +LLEAQR+ +R  +D+EML+ TG C  IENYSR+L G 
Sbjct: 121 LKACDAIEQELDERIRYFKGEDKLLEAQRISERTNFDIEMLKETGFCSGIENYSRHLAGL 180

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
             G  P TL +Y  +D L+ VDESH+TIPQI GMY GD  RK+TL +YGFRLPS  DNRP
Sbjct: 181 PAGATPHTLMDYFKDDYLIIVDESHITIPQIRGMYAGDQSRKSTLVDYGFRLPSAKDNRP 240

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           L FEE+       + VSATP  +E E  + +  EQIIRPTGL+DP V +R    Q++D+ 
Sbjct: 241 LNFEEFESKIDQMLFVSATPNVYEDEH-ELLRTEQIIRPTGLLDPEVVVRPVEGQIDDLI 299

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            E+N   +   ++L+T LTK+MAEDLT+Y+ E  IRV+Y+HS++ TLER EIIRDLRL  
Sbjct: 300 GEVNKEIKDHHKVLITTLTKKMAEDLTDYMREIGIRVKYLHSDIDTLERAEIIRDLRLDV 359

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS+TSLIQTIGRAARN    VI+YAD 
Sbjct: 360 FDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRAARNSEGHVIMYADK 419

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
           IT S+++A++ET RRRE Q  +N++H I P ++++ + E+I   + +  A   ++     
Sbjct: 420 ITDSMRVAMEETKRRREIQQAYNEEHGITPTTIQKSVRELI--SVSKKVAKEEMNFKKDP 477

Query: 753 LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            S+++ +    +  ++K+M  AA +LNFE AA  RD++  LK 
Sbjct: 478 ESMNRDELTKLIADIQKKMQKAAADLNFEAAAEYRDKMVELKG 520


>gi|134095237|ref|YP_001100312.1| excinuclease ABC subunit B [Herminiimonas arsenicoxydans]
          Length = 609

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/580 (48%), Positives = 394/580 (67%), Gaps = 4/580 (0%)

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           MA VI  ++RP +++APNK L AQLY E K+FFP NAVEYFVSYYDY+QPE Y+P TD +
Sbjct: 1   MANVIHRLKRPTLILAPNKTLTAQLYGEMKHFFPENAVEYFVSYYDYFQPEIYMPGTDRF 60

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304
           I K+S+IN+ ++R+R S T+SL+ER D IVV+SVS IYG+G  E+Y  + + L  G  + 
Sbjct: 61  IPKDSAINDHLERLRLSTTKSLIERRDVIVVASVSSIYGLGDPEAYRALQIALSPGVKLN 120

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           Q+EL+  L   QY R +  + R TFR  GD I+IFP+  E  A RV +  + +  +    
Sbjct: 121 QRELIRRLALLQYDRTERTLKRATFRAQGDVIDIFPADSEHRAVRVELLDDSVASVQWLD 180

Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
           P+TG+ +  ++   +   + +  P   +++A K I  +++ R+ EL +  RL+EA RL +
Sbjct: 181 PVTGKTLGAIDHYLVSPKTLFAPPTNKIDSASKKILADMEERVAELNRNNRLVEANRLYE 240

Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484
           RIT+D+EM+   G C  +ENYS Y + R+P  PP TL +Y+P+D LLFVDESHV +PQIS
Sbjct: 241 RITHDVEMMREVGYCSGMENYSCYFSERDPASPPITLLDYLPKDGLLFVDESHVMVPQIS 300

Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544
            MYRGD  RK TL +YGFRLPS  +NRPL F E+  ++P TI VSATPG +EL   +  +
Sbjct: 301 AMYRGDQARKETLIDYGFRLPSSKNNRPLNFGEFEKVKPQTIFVSATPGDYELRVSKDRV 360

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           VEQ+IRPTGL+DP VE+R A   ++D+  EI+   ++  R+L+T LTK  AE+LT++L +
Sbjct: 361 VEQVIRPTGLLDPKVEVRKADGYIDDLLAEISKCVKKKNRVLVTTLTKVSAEELTDFLTD 420

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
             IR RYMHS++K  +R+EII  LR G+FDVL+GI+LLREGLDIPE  LVAILDAD+ GF
Sbjct: 421 NGIRARYMHSDIKAEDRVEIINGLRAGEFDVLIGISLLREGLDIPEASLVAILDADRAGF 480

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
           LRS  +LIQ IGR ARN N K ILYAD +T +++ AIDET RRR+ Q+  N+++ I+P S
Sbjct: 481 LRSAHALIQMIGRVARNENGKAILYADAVTPAMKQAIDETNRRRQLQIAFNEENGISPAS 540

Query: 725 VKEKI----MEVIDPILLEDAATTNISIDAQQLSLSKKKG 760
              K+        +P +  +A   N+S    Q++  +++ 
Sbjct: 541 SVRKLAGEETNTEEPTVHSEAFCENLSDLCDQITAKEQQL 580


>gi|215404067|ref|ZP_03416248.1| excinuclease ABC subunit B [Mycobacterium tuberculosis 02_1987]
 gi|289745930|ref|ZP_06505308.1| excinuclease ABC subunit B [Mycobacterium tuberculosis 02_1987]
 gi|289686458|gb|EFD53946.1| excinuclease ABC subunit B [Mycobacterium tuberculosis 02_1987]
          Length = 569

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 276/546 (50%), Positives = 376/546 (68%), Gaps = 8/546 (1%)

Query: 95  SEQTMTPSVQAL-ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQ 153
           S   ++     L      +++P++ + +        ++    +    F++ + + P+GDQ
Sbjct: 26  SPHGVSAGGSRLVGVAFATEHPVVAHSEY------RAVEEIVRAGGHFEVVSPHAPAGDQ 79

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
           PAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMAPNK LAAQL +E 
Sbjct: 80  PAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMAPNKTLAAQLANEL 139

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RHSAT +LL R D +
Sbjct: 140 REMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRHSATSALLSRRDVV 199

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R D+   RG+FRV G
Sbjct: 200 VVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRNDMSFTRGSFRVRG 259

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+  +HYV     + 
Sbjct: 260 DTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIFPATHYVAGPERMA 318

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C  IENYSR++ GR 
Sbjct: 319 HAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCSGIENYSRHIDGRG 378

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
           PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EYGFRLPS  DNRPL
Sbjct: 379 PGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEYGFRLPSACDNRPL 438

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
            +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V ++  + Q++D+  
Sbjct: 439 TWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVVVKPTKGQIDDLIG 498

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL R+E++R LRL  +
Sbjct: 499 EIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLRRVELLRQLRLVVY 558

Query: 634 DVLVGI 639
           D+LV  
Sbjct: 559 DLLVVS 564


>gi|294637393|ref|ZP_06715685.1| excinuclease ABC subunit B [Edwardsiella tarda ATCC 23685]
 gi|291089428|gb|EFE21989.1| excinuclease ABC subunit B [Edwardsiella tarda ATCC 23685]
          Length = 484

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 279/480 (58%), Positives = 352/480 (73%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + PSGDQP AI +L  G+      Q LLGVTGSGKTFT+A VI  + RP +VMA
Sbjct: 5   FKLHSAFQPSGDQPEAIRRLEAGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++MR 
Sbjct: 65  PNKTLAAQLYGEMKQFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY R 
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLSELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV G+ I+IFP+  ED A RV +F  ++E +S F PLTGQ +R V+   +Y
Sbjct: 185 DQAFARGTFRVRGEVIDIFPAEAEDQALRVELFDEEVERLSLFDPLTGQLLRTVQRFTVY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  AM+ I+ EL  R   L    +LLE QRL QR  +DLEM+   G C 
Sbjct: 245 PKTHYVTPRERILQAMEEIRGELAQRRQVLLANNKLLEEQRLSQRTQFDLEMMNELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK TL EY
Sbjct: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRFEE+  L P TI VSATPG++ELE+  G +++Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLRFEEFEALAPQTIYVSATPGNYELERSGGEVIDQVVRPTGLLDPQIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R   TQV+D+  EIN  A  G R+L+T LTKRMAEDLTEYL E  +RVRY+HS++ T+E
Sbjct: 425 VRPVATQVDDLLSEINQRAAIGERVLVTTLTKRMAEDLTEYLEEHGVRVRYLHSDIDTVE 484


>gi|126661654|ref|ZP_01732670.1| excinuclease ABC subunit B [Cyanothece sp. CCY0110]
 gi|126617061|gb|EAZ87914.1| excinuclease ABC subunit B [Cyanothece sp. CCY0110]
          Length = 502

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 283/503 (56%), Positives = 374/503 (74%), Gaps = 1/503 (0%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
            + +PA+V+A NK LAAQL +E + FFP+NAVEYF+SYYDYYQPEAY+P +DTYIEK +S
Sbjct: 1   KIGKPALVLAHNKTLAAQLCNELRQFFPNNAVEYFISYYDYYQPEAYIPVSDTYIEKSAS 60

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           IN++ID +RHSATRSL ER D IVV+S+SCIYG+G    Y +  V L++G  V Q++LL 
Sbjct: 61  INDEIDMLRHSATRSLFERKDVIVVASISCIYGLGMPAEYLKASVPLEVGKEVNQRQLLR 120

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV  QY R D+ + RG FRV GD +EI P++ ED   RV  FG++I+ I    P+TG+ 
Sbjct: 121 DLVTVQYSRNDLDLQRGRFRVKGDVLEIVPAY-EDRVVRVEFFGDEIDAIRYLDPVTGEI 179

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           + +++ I IY   H+V P   L  A + I+ EL+ +++ LEK G+LLEAQR++QR  YDL
Sbjct: 180 LNSLKNINIYPARHFVIPEEQLEAACQAIEIELQEQILNLEKAGKLLEAQRIDQRTRYDL 239

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           E+L   G C  +ENYSR+L GR PG PP  L +Y P+D LL VDESHVT+PQI GMY GD
Sbjct: 240 ELLREVGYCNGVENYSRHLAGRKPGSPPECLVDYFPKDWLLIVDESHVTVPQIRGMYNGD 299

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK  L ++GFRLPS  DNRPL+ +E+       I VSATPG+WE+EQ +  ++EQIIR
Sbjct: 300 QARKKVLIDHGFRLPSAADNRPLKSDEFWDKVNQCIFVSATPGNWEIEQSEDRVIEQIIR 359

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTG++DP + +RS   QV+D+  EI    ++  R+L+T LTKRMAEDLTEY  ER+++V+
Sbjct: 360 PTGVLDPEIFVRSTEGQVDDLLGEIKERVKREERVLITTLTKRMAEDLTEYFQERDVKVQ 419

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSE+K++ERIEI++ LR G+FDVL+G+NLLREGLD+PE  LVAILDADKEGFLR++ S
Sbjct: 420 YLHSEIKSIERIEILQALRNGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRAEKS 479

Query: 671 LIQTIGRAARNVNSKVILYADTI 693
           LIQTIGRAAR+VN + ILY D +
Sbjct: 480 LIQTIGRAARHVNGQAILYGDNL 502


>gi|289447242|ref|ZP_06436986.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis CPHL_A]
 gi|289420200|gb|EFD17401.1| excinuclease ABC subunit B uvrB [Mycobacterium tuberculosis CPHL_A]
          Length = 510

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 270/491 (54%), Positives = 356/491 (72%), Gaps = 1/491 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMA
Sbjct: 7   FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RH
Sbjct: 67  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R 
Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+
Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C 
Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EY
Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V 
Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IRVRY+HSEV TL 
Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 621 RIEIIRDLRLG 631
           R+E++  LRLG
Sbjct: 486 RVELLPQLRLG 496


>gi|315304695|ref|ZP_07874898.1| UvrABC system protein B [Listeria ivanovii FSL F6-596]
 gi|313626935|gb|EFR95865.1| UvrABC system protein B [Listeria ivanovii FSL F6-596]
          Length = 494

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 253/496 (51%), Positives = 338/496 (68%), Gaps = 3/496 (0%)

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
             + + +LL  LV  QY R DI   RG FRV GD +EIFP+  ++   RV  FG++IE I
Sbjct: 1   MEISRDQLLRKLVDIQYDRNDIDFQRGRFRVRGDVVEIFPASRDEHCMRVEFFGDEIERI 60

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
            E   LTG+ I   E + I+  SH+VT    +  A+  IK EL+ RL  L  + +LLEAQ
Sbjct: 61  REVDALTGEIIGEREHVSIFPASHFVTRPDIMKKAIINIKAELEDRLKVLRADNKLLEAQ 120

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
           RLEQR  YDLEM+E  G C  IENYSR+L+ R  G  P TL +Y P+D  + +DESHVT+
Sbjct: 121 RLEQRTNYDLEMMEEMGYCSGIENYSRHLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTM 180

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           PQI GM+ GD  RK  L ++GFRLPS +DNRPLR EE+       + +SATPG +ELE+ 
Sbjct: 181 PQIRGMFNGDQARKQMLVDHGFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEK- 239

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
              ++EQIIRPTGL+DP VEIR  + Q++D+ DEIN   ++  R+L+T LTK+M+EDLT 
Sbjct: 240 NPDVIEQIIRPTGLLDPIVEIRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTN 299

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           YL E  ++V+Y+HSEVKTLERIEIIRDLRLG +DV+VGINLLREG+D+PE  LVAILDAD
Sbjct: 300 YLKEAGVKVQYLHSEVKTLERIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDAD 359

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
           KEGFLRS+ SLIQT+GRAARN N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I
Sbjct: 360 KEGFLRSERSLIQTMGRAARNENGRVIMYADKMTDSMRNSISETERRRKIQIEYNEKHGI 419

Query: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
            P ++K++I  +I      D        D  +  +SKK+    ++ +  +M  AA  L+F
Sbjct: 420 TPMTIKKEIRGIIAATSAADEREAIKQHDLSK--MSKKERDVFIEGMEHEMKEAAKALDF 477

Query: 781 EEAARIRDEIKRLKSS 796
           E AA +RD +  +K+ 
Sbjct: 478 ERAAELRDALLEIKAE 493


>gi|326903246|gb|EGE50179.1| LOW QUALITY PROTEIN: excinuclease ABC [Mycobacterium tuberculosis
           W-148]
          Length = 521

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 270/508 (53%), Positives = 357/508 (70%), Gaps = 2/508 (0%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
            ++    +    F++ + + P+GDQPAAI +L + I++ E+  +LLG TG+GK+ T A +
Sbjct: 16  RAVEEIVRAGGHFEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWL 75

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           IE +QRP +VMAPNK LAAQL +E +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+
Sbjct: 76  IERLQRPTLVMAPNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKD 135

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           SSIN+ ++R+RHSAT +LL R D +VV+SVSCIYG+G+ +SY    V+LK+G+ V +  L
Sbjct: 136 SSINDDVERLRHSATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGL 195

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R D+   RG+FRV GD++EI PS+ E++A R+  FG++IE +   +PLTG
Sbjct: 196 LRLLVDVQYTRNDMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTG 254

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + IR V++++I+  +HYV     +  A+  I+EEL  RL ELE +G+LLEAQRL  R  Y
Sbjct: 255 EVIRQVDSLRIFPATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNY 314

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+EM+   G C  IENYSR++ GR PG PP TL +Y PED LL +DESHVT+PQI GMY 
Sbjct: 315 DIEMMRQVGFCSGIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYE 374

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L EYGFRLPS  DNRPL +EE+      T+ +SATPG +EL Q  G  VEQ+
Sbjct: 375 GDISRKRNLVEYGFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQV 434

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGLVDP V ++  + Q++D+  EI   A    R+L+T LTK+MAEDLT+YL E  IR
Sbjct: 435 IRPTGLVDPKVVVKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIR 494

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           VRY+HSEV T         LRLG +DVL
Sbjct: 495 VRYLHSEVDTCA-GSSCAQLRLGDYDVL 521


>gi|262165260|ref|ZP_06032997.1| excinuclease ABC subunit B [Vibrio mimicus VM223]
 gi|262024976|gb|EEY43644.1| excinuclease ABC subunit B [Vibrio mimicus VM223]
          Length = 511

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 260/507 (51%), Positives = 349/507 (68%), Gaps = 11/507 (2%)

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
           + Q+++L  L + QY R D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS 
Sbjct: 2   INQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISL 61

Query: 363 FYPLTGQKI-RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
           F PLTG    R++    +Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR
Sbjct: 62  FDPLTGVITSRDLARYTVYPKTHYVTPRERILEAIELIKSELQVRRQYLLDNNKLLEEQR 121

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
           + QR  +D+EM+   G C  IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+P
Sbjct: 122 ISQRTQFDIEMMNELGFCSGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVP 181

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           QI  M++GD  RK TL E+GFRLPS +DNRPL+F+E+  L P TI VSATPG +EL +  
Sbjct: 182 QIGAMFKGDRSRKETLVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPGEYELTKSG 241

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G + +Q++RPTGL+DP +E+R   TQV+D+  E  + A    RIL+T LTKRMAEDLTEY
Sbjct: 242 GEVADQVVRPTGLLDPIIEVRPVATQVDDLLSEARVRAANDERILVTTLTKRMAEDLTEY 301

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L+E  ++VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADK
Sbjct: 302 LHEHGVKVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADK 361

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN 721
           EGFLRS+ SLIQTIGRAARN+N K ILYAD+ITKS++ A+DET RRREKQ  +N++ +I 
Sbjct: 362 EGFLRSERSLIQTIGRAARNINGKAILYADSITKSMRKAMDETERRREKQHAYNEQLSIT 421

Query: 722 PQSVKEKIMEVIDPILLEDAATTN----------ISIDAQQLSLSKKKGKAHLKSLRKQM 771
           PQ +K  + ++++   +  +                  A    L+ ++ +  +  L   M
Sbjct: 422 PQPLKRSVKDIMELGDIAKSRKQKNSKVVPLAKVAEESATYQVLTPQQLEKEISKLEAAM 481

Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPY 798
           +  A NL FE AA+ RDEI +L+    
Sbjct: 482 YQHAQNLEFELAAQKRDEIHQLRQQFI 508


>gi|330980694|gb|EGH78797.1| excinuclease ABC subunit B [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 502

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 266/501 (53%), Positives = 347/501 (69%), Gaps = 10/501 (1%)

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
            LL  L   QY R D+   R TFRV GD I+I+P+  +  A R+ +F +++E +S F PL
Sbjct: 1   ALLRRLADLQYTRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPL 60

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG+ IR +     Y  SHYVTPR TL  AM+ IK EL+ RL  L  + +L+EAQRLEQR 
Sbjct: 61  TGEVIRKLPRFTFYPKSHYVTPRETLIEAMENIKVELQERLEYLRSQNKLVEAQRLEQRT 120

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
            +DLEM+   G C  IENYSRYL+GR  G PPPTLF+Y+P D+LL +DESHV++PQ+  M
Sbjct: 121 RFDLEMMLELGYCNGIENYSRYLSGRPSGAPPPTLFDYLPPDALLVIDESHVSVPQVGAM 180

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
           Y+GD  RK TL EYGFRLPS +DNRP+RF+EW  + P TI VSATPG++E E   G IVE
Sbjct: 181 YKGDRSRKETLVEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRIVE 239

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q++RPTGLVDP +EIR A TQV+D+  EI+  A    R+L+T LTKRM+EDLT+YL +  
Sbjct: 240 QVVRPTGLVDPQIEIRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHG 299

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           +RVRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLR
Sbjct: 300 VRVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 359

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           S  SLIQTIGRAARN+N + ILYAD IT S++ AI ET RRREKQ+  N +H I P+ V 
Sbjct: 360 SDRSLIQTIGRAARNLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVF 419

Query: 727 EKIMEVIDPILLEDAATTNISIDAQQLS---------LSKKKGKAHLKSLRKQMHLAADN 777
           + + ++++   +  + +      A+             S  +    ++ L ++M+  A +
Sbjct: 420 KDVADIMEGATVPGSRSKKRKGMAKAAEENARYENELRSPSEINKRIRQLEEKMYQLARD 479

Query: 778 LNFEEAARIRDEIKRLKSSPY 798
           L FE AA++RDEI +L+    
Sbjct: 480 LEFEAAAQMRDEIGKLRERLL 500


>gi|282908145|ref|ZP_06315976.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282327810|gb|EFB58092.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
          Length = 490

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 250/488 (51%), Positives = 337/488 (69%), Gaps = 2/488 (0%)

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L  LV  QY R DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG
Sbjct: 4   LGKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTG 63

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + ++  E   I+  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  Y
Sbjct: 64  EVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNY 123

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DLEM+   G C  IENYS +LT R  G  P TL +Y  +D L+ +DESHVT+PQ+ GMY 
Sbjct: 124 DLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYN 183

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           GD  RK  L ++GFRLPS +DNRPL+FEE+       + VSATPG +E+E     +VEQI
Sbjct: 184 GDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHT-DKMVEQI 242

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           IRPTGL+DP +E+R    Q++D+  EI    ++  R+L+T LTK+M+EDLT Y+ E  I+
Sbjct: 243 IRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIK 302

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V Y+HSE+KTLERIEIIRDLR+G +DV+VGINLLREG+DIPE  LV ILDADKEGFLRS 
Sbjct: 303 VNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSN 362

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            SLIQTIGRAARN   +VI+YAD +T S++ AIDET RRRE Q++HN+KH I P+++ +K
Sbjct: 363 RSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKK 422

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRD 788
           I ++I   + E+    + +       ++KK+ +  + ++ K+M  AA +L+FE+A  +RD
Sbjct: 423 IHDLISATV-ENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRD 481

Query: 789 EIKRLKSS 796
            +  LK+ 
Sbjct: 482 MLFELKAE 489


>gi|289761782|ref|ZP_06521160.1| excinuclease ABC subunit B [Mycobacterium tuberculosis GM 1503]
 gi|289709288|gb|EFD73304.1| excinuclease ABC subunit B [Mycobacterium tuberculosis GM 1503]
          Length = 554

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 256/517 (49%), Positives = 350/517 (67%), Gaps = 8/517 (1%)

Query: 95  SEQTMTPSVQAL-ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQ 153
           S   ++     L      +++P++ + +        ++    +    F++ + + P+GDQ
Sbjct: 8   SPHGVSAGGSRLVGVAFATEHPVVAHSEY------RAVEEIVRAGGHFEVVSPHAPAGDQ 61

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
           PAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMAPNK LAAQL +E 
Sbjct: 62  PAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMAPNKTLAAQLANEL 121

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RHSAT +LL R D +
Sbjct: 122 REMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRHSATSALLSRRDVV 181

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R D+   RG+FRV G
Sbjct: 182 VVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRNDMSFTRGSFRVRG 241

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+  +HYV     + 
Sbjct: 242 DTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIFPATHYVAGPERMA 300

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C  IENYSR++ GR 
Sbjct: 301 HAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCSGIENYSRHIDGRG 360

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
           PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EYGFRLPS  DNRPL
Sbjct: 361 PGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEYGFRLPSACDNRPL 420

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
            +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V ++  + Q++D+  
Sbjct: 421 TWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVVVKPTKGQIDDLIG 480

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           EI   A    R+L+T LTK+MAEDLT+YL E      
Sbjct: 481 EIRTRADADQRVLVTTLTKKMAEDLTDYLLEDGHSGA 517


>gi|260364874|ref|ZP_05777452.1| UvrABC system protein B [Vibrio parahaemolyticus K5030]
 gi|308113949|gb|EFO51489.1| UvrABC system protein B [Vibrio parahaemolyticus K5030]
          Length = 496

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 259/493 (52%), Positives = 347/493 (70%), Gaps = 11/493 (2%)

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVE 375
           Y R D+   RG FRV G+ I+IFP+  +  A RV MF ++++ IS F PLTG    R++ 
Sbjct: 1   YSRNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLP 60

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              IY  +HYVTPR  +  A++ IK EL++R  +L +  +L+E QR+ QR  +D+EM+  
Sbjct: 61  RYTIYPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNE 120

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
            G C  IENYSRYL+GR+ GEPPPTLF+Y+P D LL +DESHVT+PQI  MY+GD  RK 
Sbjct: 121 LGFCSGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKE 180

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           TL E+GFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G I +Q++RPTGL+
Sbjct: 181 TLVEFGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLL 240

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           DP +E+R   TQV+D+  EI + A +  R+L+T LTKRMAEDLTEYL+E ++RVRY+HS+
Sbjct: 241 DPILEVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSD 300

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTI
Sbjct: 301 IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 360

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GRAARN+  K ILYAD ITKS++ A+DET RRREKQ  +N+K  I PQ++K  I ++++ 
Sbjct: 361 GRAARNIEGKAILYADNITKSMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIMEL 420

Query: 736 ILLEDAA----------TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
             +  +           +           +S ++ +  +  L   M+  A +L FE AA 
Sbjct: 421 GDITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEISRLEAAMYQHAQDLEFELAAE 480

Query: 786 IRDEIKRLKSSPY 798
            RDEI++L++   
Sbjct: 481 KRDEIEKLRAQFI 493


>gi|227328798|ref|ZP_03832822.1| excinuclease ABC subunit B [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 441

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 244/438 (55%), Positives = 317/438 (72%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F + +D+ P+GDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  + RP ++
Sbjct: 3   KVFTLNSDFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMM 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D IVV+SVS IYG+G  + Y +M++ L  G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYS 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +++A RV +F  ++E +S F PLTG  ++ V    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHVLQTVPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK EL  R   L    +L+E QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILQAMEDIKVELADRKKVLLANDKLVEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSRYL+GR PGEPPPTLF+Y+P D LL +DESHVT+PQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+  G +++Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPI 422

Query: 559 VEIRSARTQVEDVYDEIN 576
           +E+R   TQV+D+  EI 
Sbjct: 423 IEVRPVATQVDDLLSEIR 440


>gi|99034302|ref|ZP_01314346.1| hypothetical protein Wendoof_01000855 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 496

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 274/516 (53%), Positives = 360/516 (69%), Gaps = 21/516 (4%)

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           VSCIYG+GS ESY  MI+ L +G+ +   + LS+L   QYKR D    RG FRV GD ++
Sbjct: 1   VSCIYGLGSPESYRSMIIPLSVGNKIRINDFLSNLTDLQYKRSDARFERGYFRVRGDIVD 60

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFPSH E+ AWR+S+FG++IEEISE   +TG   + V  I I+ NS+Y+TPR  L  A++
Sbjct: 61  IFPSHYENKAWRLSLFGDEIEEISEVDAITGNVTKGVNKITIFPNSYYITPREALLQAIE 120

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            +K+EL  RL     + +++EA+RLEQR  +D+EM+ TTG C+ IENYSRYL G   G+P
Sbjct: 121 LVKKELHERLDYYYSQNKIVEAKRLEQRTNFDIEMMRTTGICKGIENYSRYLYGMEAGDP 180

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           PPTLFEY+P+D +LFVDESHVT+PQ+  MY G+  RK  L +YGFRLPS  DNRPL+FEE
Sbjct: 181 PPTLFEYLPKDVILFVDESHVTVPQVGAMYSGNEARKKKLIDYGFRLPSAFDNRPLKFEE 240

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           W  +RP T+ +SATPG +EL +   + +EQ+IRPTGL DP   ++   +Q++DV  E  +
Sbjct: 241 WEGVRPQTVYISATPGKYELAKTSNVFIEQVIRPTGLTDPICIVKPIESQIDDVIHEAQV 300

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              +G  +L+T LTK+MAE+L EY+ E N+RV Y+HS++  LERIEII  LR  + DVLV
Sbjct: 301 TIGKGFCVLITTLTKKMAENLAEYMSEMNMRVSYLHSDIAALERIEIIYKLRSKEIDVLV 360

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           G+NLLREGLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARN   +VILYAD IT S+
Sbjct: 361 GVNLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNAEGRVILYADKITGSL 420

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
             A+ ET RRR+KQ EHN  +NI P+++ + I   +                 Q+ ++++
Sbjct: 421 DRALRETERRRKKQEEHNILYNIVPKTIIKPISNTL-----------------QERAIAE 463

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
            K   +   LRKQM   A+NL FEEAAR    IK+L
Sbjct: 464 PKVNTNKDDLRKQMIEHAENLEFEEAAR----IKKL 495


>gi|254672084|emb|CBA04744.1| excinuclease ABC subunit B [Neisseria meningitidis alpha275]
          Length = 515

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 249/481 (51%), Positives = 339/481 (70%), Gaps = 6/481 (1%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   + P+GDQP AIA LL+G+      Q LLGVTGSGKT+TMA VI    RPAI+
Sbjct: 33  SPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAII 92

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA NK LAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP  D +IEK+S+INE I++M
Sbjct: 93  MAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQM 152

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++L+ R+D I+V++VS IYGIG    Y QM++ +K GD++EQ++++++LV  QY+
Sbjct: 153 RLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYE 212

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D+   RG+FRV GD I+++P+   + A R+S+F ++I+ +  F PL+G  I+ V    
Sbjct: 213 RGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYT 272

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           ++ +SHYVTPR T+  A + IKEEL+ R+    KE R +E QR+EQR  +DLEML   G 
Sbjct: 273 VFPSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGF 332

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C+ IENYSR+ +G+  GEPPPTL +Y+P+++++F+DESHVT+ QI GMY+GD  RK  L 
Sbjct: 333 CKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV 392

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +YGFRLPS  DNRPL+F E+  + P T+ VSATP  +E E   G +VEQ++RPTGLVDP 
Sbjct: 393 DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHA-GQVVEQVVRPTGLVDPQ 451

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV-----RYMH 613
           + IR   TQV+D+  EIN   Q+G R+L+T LTKRMA      L     +      RY H
Sbjct: 452 IIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAGTTHRLLQRTRHQSALPAQRYRH 511

Query: 614 S 614
            
Sbjct: 512 G 512


>gi|219119648|ref|XP_002180579.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408052|gb|EEC47987.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 615

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 261/600 (43%), Positives = 368/600 (61%), Gaps = 25/600 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   Y P+GDQP AIAQL   +   ++  +L G+TG+GKT  MA +I    RP +V+ 
Sbjct: 1   FRVTAKYTPTGDQPEAIAQLTHQLQRGDRFSILRGITGTGKTLVMAHLIANHGRPTLVLC 60

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQL  E ++F   NAVE FVSYY++Y PE++V  T  YI K+SS+N +ID +RH
Sbjct: 61  HNKTLAAQLARELRSFLGDNAVELFVSYYNHYVPESFVEATGKYIAKKSSVNAEIDVLRH 120

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE-QKELLSSLVKQQYKR 319
            ATR+LL RND +VV+SVSCIYG+G  + Y       ++GD V    ++L+ L    ++ 
Sbjct: 121 RATRALLTRNDVVVVASVSCIYGLGLPKEYLDASWAFQLGDVVSWNDDVLTKLDTMLFEH 180

Query: 320 Q--DIGIIRGTF-RVCGD-----SIEIFPSHLEDVAWRVSM---------FGNDIEEISE 362
              D    RGT+     D      + ++P+H E    R+            G  +  I E
Sbjct: 181 VVDDDLFERGTYQSSKSDEGVTTYLNVWPTH-EKCPMRIEFASVGDGAVKDGMVVRAIQE 239

Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
             P +G  ++ + + +I+   H+VT    L  A   I+EEL+ R+ EL  EG+ +EA RL
Sbjct: 240 GTP-SG--MKPMSSARIFPAKHHVTSDDRLEQACFAIEEELQTRVQELLAEGKRIEADRL 296

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVT 479
           +QR+  D+ M+  TG C   ENYSR+L GR  G PP TL +Y+     D LL VDESHVT
Sbjct: 297 QQRVLNDVLMMRETGFCSGGENYSRHLAGREAGSPPDTLMDYMNLNTRDWLLLVDESHVT 356

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           +PQ+  MY GD  RK  L ++G+RLPS +DNRPL+ EE+      T+ VSATP   EL +
Sbjct: 357 LPQLKAMYGGDQARKHRLVKHGYRLPSALDNRPLKEEEFWSNVQQTVFVSATPAKQELGK 416

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
            +   VE +IRPT + DP +E+RS   Q++++  E+ +   +  R L+  LTKR AEDL+
Sbjct: 417 AEYPPVEMMIRPTYVCDPEIEVRSPEGQLDNLLAELRIRVDRKQRALVVTLTKRDAEDLS 476

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
            YL E  I   Y+HS + T ER + +R L++G+ D LVGIN LREGLD+P+  LVA+L+A
Sbjct: 477 SYLIEHGISSTYIHSGLSTNERSDALRALQMGEIDCLVGINCLREGLDLPQVSLVAVLNA 536

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
           D EGFLRS+T+L+Q +GRAARN   K I YA   T+++Q  ID+T  RREKQ  +N ++N
Sbjct: 537 DSEGFLRSETALLQIVGRAARNTEGKAIFYAKRTTEAMQRCIDDTDSRREKQTAYNAQNN 596


>gi|300814257|ref|ZP_07094531.1| putative excinuclease ABC subunit B [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511630|gb|EFK38856.1| putative excinuclease ABC subunit B [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 440

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 239/439 (54%), Positives = 307/439 (69%), Gaps = 1/439 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI +L++G++   K Q LLGVTGSGKTFTMA VIE +QRPA+V+A
Sbjct: 3   FKIHSDYKPTGDQPQAIDKLVEGLNKGYKHQTLLGVTGSGKTFTMANVIERVQRPALVIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QL SE K FFP NAVEYFVSYYDYYQPEAYVP TDT+IEK+SS+N++ID++RH
Sbjct: 63  HNKTLAYQLCSELKEFFPENAVEYFVSYYDYYQPEAYVPMTDTFIEKDSSVNDEIDKLRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL ER D I+V+SVSCIYG+G    Y  + + L+ G   ++ E++S LV  QY R 
Sbjct: 123 SATMSLFERRDVIIVASVSCIYGLGDPIDYENLAISLRPGMIRDRNEIMSKLVDIQYVRN 182

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D    RGTFRV GD +EIFP+   + + RV  FG++I+ ISE   LTG+ +R +    I 
Sbjct: 183 DFDFSRGTFRVRGDVLEIFPASSSEKSIRVEFFGDEIDRISEVDALTGKVLRLLTHAYIT 242

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHY T +  +  A+  I+EEL+ RL  L+ + +LLEAQRLEQR  YDLEMLE  G C 
Sbjct: 243 PASHYATTKTKVEKAIVTIEEELEERLKVLKDQDKLLEAQRLEQRTRYDLEMLEEMGYCN 302

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+ R  G  P TL +Y P+D +  +DESH +IPQI GM+ GD  RK TL EY
Sbjct: 303 GIENYSRHLSQRPAGSRPYTLIDYFPDDFITIIDESHQSIPQIRGMFNGDRSRKETLVEY 362

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPLRF E+  +    + VSATPG +E E  +    EQIIRPTGL+DP + 
Sbjct: 363 GFRLPSALDNRPLRFFEFESMMKQCMYVSATPGPYEREH-EENSAEQIIRPTGLLDPQIF 421

Query: 561 IRSARTQVEDVYDEINLAA 579
           +R  + Q++D+  EIN   
Sbjct: 422 VRPVKNQIDDLVSEINKTV 440


>gi|289569678|ref|ZP_06449905.1| excinuclease ABC subunit B [Mycobacterium tuberculosis T17]
 gi|289543432|gb|EFD47080.1| excinuclease ABC subunit B [Mycobacterium tuberculosis T17]
          Length = 511

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 243/493 (49%), Positives = 334/493 (67%), Gaps = 8/493 (1%)

Query: 95  SEQTMTPSVQAL-ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQ 153
           S   ++     L      +++P++ + +        ++    +    F++ + + P+GDQ
Sbjct: 26  SPHGVSAGGSRLVGVAFATEHPVVAHSEY------RAVEEIVRAGGHFEVVSPHAPAGDQ 79

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
           PAAI +L + I++ E+  +LLG TG+GK+ T A +IE +QRP +VMAPNK LAAQL +E 
Sbjct: 80  PAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMAPNKTLAAQLANEL 139

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           +   PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SSIN+ ++R+RHSAT +LL R D +
Sbjct: 140 REMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRHSATSALLSRRDVV 199

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           VV+SVSCIYG+G+ +SY    V+LK+G+ V +  LL  LV  QY R D+   RG+FRV G
Sbjct: 200 VVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRNDMSFTRGSFRVRG 259

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D++EI PS+ E++A R+  FG++IE +   +PLTG+ IR V++++I+  +HYV     + 
Sbjct: 260 DTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIFPATHYVAGPERMA 318

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A+  I+EEL  RL ELE +G+LLEAQRL  R  YD+EM+   G C  IENYSR++ GR 
Sbjct: 319 HAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCSGIENYSRHIDGRG 378

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
           PG PP TL +Y PED LL +DESHVT+PQI GMY GD  RK  L EYGFRLPS  DNRPL
Sbjct: 379 PGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEYGFRLPSACDNRPL 438

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
            +EE+      T+ +SATPG +EL Q  G  VEQ+IRPTGLVDP V ++  + Q++D+  
Sbjct: 439 TWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVVVKPTKGQIDDLIG 498

Query: 574 EINLAAQQGLRIL 586
           EI   A    R+L
Sbjct: 499 EIRTRADADQRVL 511


>gi|299782900|gb|ADJ40898.1| Excinuclease ABC, B subunit [Lactobacillus fermentum CECT 5716]
          Length = 457

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 229/441 (51%), Positives = 311/441 (70%), Gaps = 1/441 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ +DY P+GDQP AIA L KG+   +  Q+LLG TG+GKTFT++ VI+ + RP ++++
Sbjct: 10  FQLVSDYQPTGDQPEAIAALTKGVEEGDHAQILLGATGTGKTFTISNVIKNVNRPTLILS 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK++SIN++ID++RH
Sbjct: 70  HNKTLAGQLYGEMKKFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDQLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT SL+ERND IVV+SVS I+G+GS   Y   +V L++G  + +  LL  LV+ Q+ R 
Sbjct: 130 SATSSLIERNDVIVVASVSSIFGLGSPAEYQNHVVSLRVGQEIPRNRLLRELVEIQFDRN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  E+ A RV  FG++I+ I E   LTG+ I + E + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASREEKAIRVEFFGDEIDRIREVDALTGEVIGDREHVSIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +H++T    ++ A+  I+ ++K ++ +  KEG+LLEAQRL+QR TYD+EM+   G   
Sbjct: 250 PATHFLTSEDIMDLALPEIEADMKSQVAKFTKEGKLLEAQRLQQRTTYDIEMMREMGYTN 309

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRY+  R PGEPP TL ++ P+D LL VDESH T+PQ+ GMY GD  RK  L +Y
Sbjct: 310 GIENYSRYMDRRKPGEPPFTLLDFFPKDFLLIVDESHQTMPQVRGMYNGDRARKQQLIDY 369

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL  +E+       I +SATPG +E  Q    +V+QIIRPTGL+DP +E
Sbjct: 370 GFRLPSALDNRPLTLKEFEGHVHQVIYMSATPGPYEEAQT-DRVVQQIIRPTGLLDPTIE 428

Query: 561 IRSARTQVEDVYDEINLAAQQ 581
           +R    Q++D+  EIN   ++
Sbjct: 429 VRPVMGQIDDLVGEINKRIEK 449


>gi|309807262|ref|ZP_07701233.1| putative excinuclease ABC subunit B [Lactobacillus iners LactinV
           03V1-b]
 gi|308166353|gb|EFO68561.1| putative excinuclease ABC subunit B [Lactobacillus iners LactinV
           03V1-b]
          Length = 467

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 212/460 (46%), Positives = 309/460 (67%), Gaps = 1/460 (0%)

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
             +    F++ + + P+GDQ  AI QL        K Q+L G TG+GKTFTMA +I  + 
Sbjct: 3   RKQKNKRFELVSKFQPAGDQKQAIDQLCDNFKKGVKEQILHGATGTGKTFTMANLIAKLN 62

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P +V++ NK L  QLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DTYIEK+S+IN+
Sbjct: 63  KPTLVISHNKTLVGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAIND 122

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           +ID++RH+ T +L++R D IVV+SVSCI+G+G    Y++ ++ L +G+  E+  LL  LV
Sbjct: 123 EIDQLRHATTSALMQRKDVIVVASVSCIFGLGDPREYAKSVISLSVGEEYERDLLLRDLV 182

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
             QY R D+ + RG FRV GD +EIFP+   +  +RV  FG++I++I E   LTG+ +  
Sbjct: 183 NIQYDRNDLDLQRGHFRVHGDIVEIFPAGNSNKVYRVEYFGDEIDQIVEANSLTGEILGK 242

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            E I ++  +H++T    +  A+  IK+EL +++   + +G+LLEAQR++QR  YD+EM+
Sbjct: 243 CEQISLFPATHFMTDSEQMKRAINDIKKELSLQVKAFDDKGKLLEAQRIKQRTNYDIEMM 302

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           +  G    IENYSR++  R  GEPP TL ++ P+D L+ +DESH T+P++  MY GD  R
Sbjct: 303 QEVGYTNGIENYSRHMDNRKAGEPPYTLLDFFPDDFLILIDESHATMPELQAMYNGDRRR 362

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           K TL +YGFRLPS +DNRPL+  E+       + VSATPG +EL +    +VEQIIRPTG
Sbjct: 363 KQTLIDYGFRLPSALDNRPLKLLEFEKHVHQIVYVSATPGDYELSRT-DKVVEQIIRPTG 421

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
           L+DP VE+R    Q++D+  EIN+  ++  R+    + ++
Sbjct: 422 LLDPIVEVRPINGQIDDLIAEINIRIRRKERVFCDYIDQK 461


>gi|213421127|ref|ZP_03354193.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 423

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 242/421 (57%), Positives = 307/421 (72%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL 
Sbjct: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP 
Sbjct: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPI 422

Query: 559 V 559
           +
Sbjct: 423 I 423


>gi|256045133|ref|ZP_05448033.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1]
 gi|265991568|ref|ZP_06104125.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1]
 gi|263002352|gb|EEZ14927.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1]
          Length = 547

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 294/417 (70%), Positives = 347/417 (83%)

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
           NSHYVTPRPTLN A+K IKEELK RL EL + GRLLEAQRL+QR T+DLEMLE TGSC  
Sbjct: 1   NSHYVTPRPTLNQAIKSIKEELKHRLDELTRAGRLLEAQRLDQRTTFDLEMLEATGSCAG 60

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           IENYSRYLTGR PGEPPPTLFEYIP+++L+F+DESHVT+PQI GMYRGDF RKATLAEYG
Sbjct: 61  IENYSRYLTGRKPGEPPPTLFEYIPDNALVFIDESHVTVPQIGGMYRGDFRRKATLAEYG 120

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           FRLPSCMDNRPLRFEEW+ +RP TI VSATPG+WE+E+  G+  EQ+IRPTGL+DPPVEI
Sbjct: 121 FRLPSCMDNRPLRFEEWDAMRPQTIAVSATPGNWEMEEAGGVFAEQVIRPTGLIDPPVEI 180

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R A+TQV+DV  EI   A++G R L+TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLER
Sbjct: 181 RPAKTQVDDVLGEIRDTAKKGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLER 240

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           IEIIRDLRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARN
Sbjct: 241 IEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARN 300

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
           V+ KVILYAD +T S+Q AIDET RRREKQ  +N+ H I P SVK+ I +++D +   D 
Sbjct: 301 VDGKVILYADNMTGSMQRAIDETNRRREKQQAYNEAHGITPASVKKNISDILDSVYERDH 360

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
              +IS  A++ ++      +H++ L KQM  AA +L+FE+AAR+RDEIKRL+ +  
Sbjct: 361 VRADISGFAEEGAMMGNNLASHVEYLEKQMRDAAADLDFEKAARLRDEIKRLRETEL 417


>gi|34763218|ref|ZP_00144181.1| Excinuclease ABC subunit B [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887098|gb|EAA24206.1| Excinuclease ABC subunit B [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 506

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 247/499 (49%), Positives = 350/499 (70%), Gaps = 4/499 (0%)

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
           M + +     + +KEL+  L+  +Y R DI   RG FR+ GD I+I+PS++ +  +R+  
Sbjct: 1   MTIPIDKKTGISRKELMKKLIALRYDRNDIAFERGQFRIKGDVIDIYPSYMSN-GYRLEY 59

Query: 353 FGNDIEEISEFYPLTGQKIRN-VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +G+D+EEISE   LTGQK++  +E I IY  + Y+T     +  +K IK++LK+ + + E
Sbjct: 60  WGDDLEEISEINTLTGQKVKKNLERIVIYPATQYLTADDDKDRIIKEIKDDLKVEVKKFE 119

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
            + +LLEAQRL+QR  YDLEM+   G C+ IENYSRYL+G+NPGE P TLFEY P+D +L
Sbjct: 120 DDKKLLEAQRLKQRTEYDLEMITEIGYCKGIENYSRYLSGKNPGETPDTLFEYFPKDFIL 179

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           F+DESH+T+PQ+ GMY GD  RK +L E GFRL + +DNRPLRFEE+      T+ +SAT
Sbjct: 180 FIDESHITVPQVRGMYNGDRARKESLVENGFRLKAALDNRPLRFEEFREKSNQTVFISAT 239

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
           PG +E+E     I EQ+IRPTG+VDP +EIR  + QV+D+ DEI   A +  R+L+T LT
Sbjct: 240 PGDFEVEVSDNHIAEQLIRPTGIVDPEIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLT 299

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           K++AE+LTEY  E  ++V+YMHS++ TLERIEIIR LR G+ DV++GINLLREGLDIPE 
Sbjct: 300 KKIAEELTEYYIELGVKVKYMHSDIDTLERIEIIRALRKGEIDVIIGINLLREGLDIPEV 359

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
            LVAI++ADKEGFLRS+ SL+QTIGRAARNV  +VILYAD +T S++ AI ET RRR+ Q
Sbjct: 360 SLVAIMEADKEGFLRSRRSLVQTIGRAARNVEGRVILYADIMTDSMKEAITETERRRKIQ 419

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771
            E+N  ++I+P+S+ ++I E  D I L+         + +++  +K   +  +  L K++
Sbjct: 420 KEYNAYNHIDPKSIVKEIAE--DLINLDYGIEEKKFENNKKVFRNKADIEKEITKLEKKI 477

Query: 772 HLAADNLNFEEAARIRDEI 790
               + L+FE+A  +RDE+
Sbjct: 478 KKLVEELDFEQAIVLRDEM 496


>gi|298708856|emb|CBJ30814.1| excinuclease ABC subunit B [Ectocarpus siliculosus]
          Length = 1015

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 293/796 (36%), Positives = 411/796 (51%), Gaps = 139/796 (17%)

Query: 128 SWSINNHSKDI-TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA 186
           +W +    + +   F + + + P+GDQP AI  L +GI   ++ Q LLG TG+GKTF +A
Sbjct: 209 AWLVEERERGVGAVFDLNSPFEPAGDQPEAIKALCQGIEEGKRHQTLLGATGTGKTFIIA 268

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            VI+  + P +V+APNK+LA+QL +E +  FP+NAVE+FVSYYDYY PEA+   +DTYI+
Sbjct: 269 NVIQEARLPTLVLAPNKVLASQLTNELRALFPNNAVEFFVSYYDYYLPEAFNSASDTYID 328

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ- 305
           K   IN+ IDRMRHSAT+SLLER D IVV+SVSCIYG+G    Y +  +++ +G      
Sbjct: 329 KVVQINDDIDRMRHSATQSLLERRDVIVVASVSCIYGLGMPSKYLEASIRIVVGQEWTGG 388

Query: 306 -KELLSSLVK-QQY--KRQDIGII---RGTFRVCGDS--------IEIFPSHLEDVAWRV 350
            + L   L +   Y  K          RG+FR             IEI P+  ++   RV
Sbjct: 389 WRALAQHLEQGLFYTPKHNQEDFEALPRGSFR---SVSVEGGGGVIEIGPA-SDEAVVRV 444

Query: 351 SMF-GNDIEEISEF---------------------YPLT----GQKIRNVETIKIYANSH 384
           ++     +  I                          LT    G   R          + 
Sbjct: 445 TLDAAGVVRRIQVVPIVRGGEARADKEKEPHRDLSDLLTAPDRGHHKREPHHDLSDLLTA 504

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEG--RLLEAQRLEQRITYDLEM---------- 432
                       +   +++   +I   K       E + +  +I+ ++E           
Sbjct: 505 QDLGHDKPLVGSERALDDVDAHVIYPAKHHVVGRGEMEDVMSKISEEMEERCSQLGLGGK 564

Query: 433 -----------------LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED-SLLFVD 474
                            L   G+C+ +ENYSR+L GR PG+PP TL +Y PE+  LL VD
Sbjct: 565 ILEAERLRQRTENDLLLLGAVGTCKGVENYSRHLAGRAPGDPPETLVDYFPENEWLLIVD 624

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           ESHV+ PQ+  M+ GD  RK  L E+GFRLPS +DNRPL+ +E+      TI VSATPG 
Sbjct: 625 ESHVSAPQLGAMWGGDQARKKKLVEHGFRLPSALDNRPLKADEFWSKVDKTIFVSATPGK 684

Query: 535 WELE-------QCQGIIVEQI---------IRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +ELE       +  G+  ++I         IRPTG+ DPPV+IR +  QV D+  E    
Sbjct: 685 FELELATLGAGKSGGMGWDEIGDLVDAQAVIRPTGITDPPVDIRPSEGQVSDMVQECKTR 744

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             +G R+L+T LTK+MAEDL+ +L E+ +   Y+HS VK ++R+E++R LR G+ DV+VG
Sbjct: 745 GGRGERVLVTALTKQMAEDLSAFLMEQGVPTAYLHSGVKPMQRLELLRQLRSGEIDVIVG 804

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           +NLLREGL++PE  LV ILDAD EGFLRS T+L+QTIGRA R+   + +LYAD IT S++
Sbjct: 805 VNLLREGLNLPEVSLVCILDADAEGFLRSDTALLQTIGRATRHEAGRAVLYADRITPSMK 864

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKE--KIMEVIDPILLEDAATTNISIDAQQLS-- 754
            A+ ET RRRE Q  HNK H I P SV +   + + I   +  DA  T    + +  S  
Sbjct: 865 RALAETDRRREIQTRHNKLHGITP-SVAKAASVGDSILDSINGDAVHTQREGEGRDSSSD 923

Query: 755 ------------------------------------LSKKKGKAH-LKSLRKQ----MHL 773
                                               L+  +G  H L  L +Q    M L
Sbjct: 924 HVASWANHSLLPDQVQLLYDLAAQNGKGSAHQQKTLLTPSEGTTHALMRLAEQASTKMSL 983

Query: 774 AADNLNFEEAARIRDE 789
           AA   +F+EAA  RD 
Sbjct: 984 AATKTDFKEAALWRDR 999


>gi|326560345|gb|EGE10732.1| excinuclease ABC subunit B [Moraxella catarrhalis 46P47B1]
          Length = 453

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 250/450 (55%), Positives = 314/450 (69%), Gaps = 7/450 (1%)

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           MF ++IE+I+ F PLTG+ I++V  I IY  SHYVTP+  L  A   IKEEL  RL    
Sbjct: 1   MFDDEIEKITWFDPLTGKNIKSVPRITIYPKSHYVTPKDKLEAASATIKEELAQRLEYFR 60

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
              + +EAQR+++R  YDLEM+   G C  IENYSR+L+GR  GE PPTLF+YIP D+LL
Sbjct: 61  ANDKFIEAQRIKERTQYDLEMIGQLGYCNGIENYSRHLSGRPAGEAPPTLFDYIPSDALL 120

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           F+DESHVT+PQI  MY+GD  RK TL +YGFRLPS MDNRP++FEEW  + P TI VSAT
Sbjct: 121 FIDESHVTVPQIGAMYKGDKSRKETLVQYGFRLPSAMDNRPMKFEEWEKISPATIFVSAT 180

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
           P  +ELE+ +  +VEQ++RPTGLVDP +EIR   TQV+D+  EINL      R+L+T LT
Sbjct: 181 PAQYELEKSEQ-VVEQVVRPTGLVDPILEIRPVLTQVDDILGEINLKKSLDERVLITTLT 239

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           KRMAEDLT YL E  I+V Y+HS++ T+ER++II +LR G FDVLVGINLLREGLD+PE 
Sbjct: 240 KRMAEDLTSYLKEYGIKVAYLHSDIDTVERMKIIHELRTGIFDVLVGINLLREGLDMPEV 299

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
            LVAI DADKEGFLRS+ SLIQTIGRAAR+VN K ILYADTIT S+Q AIDET RRR KQ
Sbjct: 300 SLVAIFDADKEGFLRSERSLIQTIGRAARHVNGKAILYADTITPSMQKAIDETERRRAKQ 359

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAA------TTNISIDAQQLSLSKKKGKAHLK 765
           +  N++H I P+S    I + ID    E +       +  ++   + +  S K     + 
Sbjct: 360 IAFNQEHGITPKSASRAITDKIDTGDDETSEVVQIVLSQALAGVDENILHSPKLLAKEIA 419

Query: 766 SLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            L KQM   +  L FEEAA++RD +  LK 
Sbjct: 420 RLEKQMQALSRELKFEEAAKVRDTVIALKE 449


>gi|90409505|ref|ZP_01217549.1| excinuclease ABC subunit B [Psychromonas sp. CNPT3]
 gi|90309389|gb|EAS37630.1| excinuclease ABC subunit B [Psychromonas sp. CNPT3]
          Length = 404

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 213/400 (53%), Positives = 280/400 (70%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++   + P+GDQP AI  L+ GI      Q LLGVTGSGKTFT+A  I  + RP +++A
Sbjct: 5   FELHAKFSPAGDQPQAIESLVAGIEDGVAFQTLLGVTGSGKTFTLANTIAQLNRPTLILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TD++IEK+++IN  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPSTDSFIEKDAAINAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  ++Y +M++ L +G+ +  +E+L  LV  QY R 
Sbjct: 125 SATKALLERTDVVLVASVSAIYGLGDPKAYLKMMLHLSVGEFISSREILQRLVDLQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D  + RGTFRV G+ I+IFP+  E  A R+ +F +++E IS F PLTGQ +  +  + IY
Sbjct: 185 DTELSRGTFRVRGEIIDIFPADSEIEALRIELFDDEVENISVFDPLTGQTLDKLARVTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HYVTPR  +  A+K IKEEL  R        +L+E QR+ +R  +D+EM+   G C 
Sbjct: 245 PKTHYVTPREQIIKAIKSIKEELVERKKSFLSNNKLIEEQRISERTLFDIEMMTELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSRYL+GR+ G  PPTLF+Y P  SLL +DESHVTIPQI  MY+GD  RK  L  Y
Sbjct: 305 GIENYSRYLSGRDQGAAPPTLFDYFPAKSLLIIDESHVTIPQIGAMYKGDRSRKENLVNY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           GFRLPS +DNRPL+F E+  L   TI VSATP  +E+E+ 
Sbjct: 365 GFRLPSALDNRPLKFSEFEKLAAQTIYVSATPADYEIEKS 404


>gi|289645475|ref|ZP_06477432.1| excinuclease ABC subunit B [Frankia symbiont of Datisca glomerata]
 gi|289504715|gb|EFD25856.1| excinuclease ABC subunit B [Frankia symbiont of Datisca glomerata]
          Length = 422

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 227/424 (53%), Positives = 309/424 (72%), Gaps = 2/424 (0%)

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
              PHNAVEYFVSYYDYYQPEAY+ +TDTYIEK+SS+NE+++R+RHSAT SLL R D +V
Sbjct: 1   ELLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSVNEEVERLRHSATMSLLTRRDVVV 60

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           V+SVSCIYG+G+ E Y + +V+L++G+ +++  LL   V  QY R DI   RGT RV GD
Sbjct: 61  VASVSCIYGLGTPEEYIKRMVRLRVGEEIDRDSLLRRFVDVQYARNDIAFTRGTLRVRGD 120

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
           ++E+FP + E++A R+ MFG++IE ++  +PLTG+ +R  + + ++  +HYV     +  
Sbjct: 121 TVEVFPVY-EELAVRIEMFGDEIERLAYLHPLTGEIVREAQEVFVFPATHYVAGPERMER 179

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A+  I+ EL  RL ELE++ RLLEAQRL  R TYD+EM+   G C  IENYSR++ GR  
Sbjct: 180 AIAGIETELTDRLAELERQSRLLEAQRLRMRTTYDIEMMRQVGFCSGIENYSRHIDGRVA 239

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
           G  P TL +Y P+D LL +DESH T+PQI GM+ GD  RK  L E+GFRLPS MDNRPLR
Sbjct: 240 GSAPHTLLDYFPDDFLLVIDESHNTVPQIGGMFEGDMSRKRNLVEHGFRLPSAMDNRPLR 299

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           +EE+      T+ +SATPG +EL +  G +VEQIIRPTGL+DP V ++  R Q++D+  E
Sbjct: 300 WEEFCARIDQTVYLSATPGPYELSRADG-VVEQIIRPTGLLDPEVVLKPTRGQIDDLVGE 358

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I + A++  R+L+T LTK+MAEDLT+YL E  IRVRY+HS++ TL R+E++  LR G+FD
Sbjct: 359 IRVRAERDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSDIDTLRRVELLTGLRKGEFD 418

Query: 635 VLVG 638
           VLVG
Sbjct: 419 VLVG 422


>gi|323971944|gb|EGB67165.1| excinuclease ABC [Escherichia coli TA007]
          Length = 414

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 236/408 (57%), Positives = 293/408 (71%), Gaps = 8/408 (1%)

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           M+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   G C  IENYSR+L+GR PG
Sbjct: 1   MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 60

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           EPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EYGFRLPS +DNRPL+F
Sbjct: 61  EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 120

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           EE+  L P TI VSATPG++ELE+  G +V+Q++RPTGL+DP +E+R   TQV+D+  EI
Sbjct: 121 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI 180

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+ER+EIIRDLRLG+FDV
Sbjct: 181 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 240

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAARNVN K ILY D IT 
Sbjct: 241 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 300

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--------PILLEDAATTNIS 747
           S+  AI ET RRREKQ ++N++H I PQ + +K+++++                +   + 
Sbjct: 301 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 360

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            D   + +S K  +  +  L   M   A NL FEEAA+IRD++ +L+ 
Sbjct: 361 PDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 408


>gi|257081024|ref|ZP_05575385.1| excinuclease ABC [Enterococcus faecalis E1Sol]
 gi|256989054|gb|EEU76356.1| excinuclease ABC [Enterococcus faecalis E1Sol]
          Length = 411

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 216/411 (52%), Positives = 290/411 (70%), Gaps = 1/411 (0%)

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
           +T    +  A+  I+EEL+ RL  L  E +LLEAQRLEQR  YD+EM+   G    IENY
Sbjct: 1   MTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIEMMREMGYTSGIENY 60

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505
           SR++ GR  GEPP TL ++ P+D LL +DESHVT+PQI GMY GD  RK  L +YGFRLP
Sbjct: 61  SRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDRARKQMLVDYGFRLP 120

Query: 506 SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565
           S +DNRPLR EE+       + VSATPG +E+EQ +  +V+QIIRPTGL+DP VEIR   
Sbjct: 121 SALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTE-TVVQQIIRPTGLLDPEVEIRPIM 179

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            Q++D+  EI+   ++  R+ +T LTK+MAEDLT+Y  E  ++V+Y+HS++KTLER EII
Sbjct: 180 GQIDDLVGEIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYLHSDIKTLERTEII 239

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RDLRLG+FD+L+GINLLREG+D+PE  L+AILDADKEGFLRS+ SL+QT+GRAARN   K
Sbjct: 240 RDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAARNAEGK 299

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN 745
           VI+YAD IT S+Q A+DET RRR  Q  +N++H I P+++ ++I ++I      D   T 
Sbjct: 300 VIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTADKDETV 359

Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           + +D     LS+++    L  L ++M  AA  L+FE AA +RD I  LK++
Sbjct: 360 VQLDKSYEDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILELKAA 410


>gi|323453940|gb|EGB09811.1| hypothetical protein AURANDRAFT_24596 [Aureococcus anophagefferens]
          Length = 700

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 251/631 (39%), Positives = 367/631 (58%), Gaps = 18/631 (2%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F M+  + P+GDQPAAI  L+  +   E+  +L G TG+GKTF +A  IE + +P +V+A
Sbjct: 3   FSMRAPFPPAGDQPAAIDSLVGRLGRGERRVVLKGATGTGKTFVLAHAIEQLDKPTLVLA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK+LAAQLYSE + FFP  AV++FVS++DYY+PE+Y   +DTY EK S+ N++ID +RH
Sbjct: 63  PNKVLAAQLYSELREFFPDAAVKFFVSHFDYYRPESYKLASDTYSEKRSATNDRIDALRH 122

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV-EQKELLSSLVKQQYKR 319
            ATRSL ER D IVV++VSCIYG+G  E Y    + +  G S   + EL ++++  +Y  
Sbjct: 123 DATRSLNERRDTIVVATVSCIYGLGMPEEYLSSALLVHPGQSWTGRSELEAAMLALRYGA 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPSH-LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
                 RG F    D   +      E    ++S+   D   +     +     R+V+   
Sbjct: 183 DGAD--RGGFAWTDDGAALSVGLVTEPATLKISVEAGDDALLVSDVSIVADDARSVDEYV 240

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +Y  SHYV     +    + + EEL   L      GR  EA+RLEQR+  D++ +   G 
Sbjct: 241 LYPASHYVATAEEIERVAQAVLEELDDDLAAFRAAGRFREARRLEQRVLADVDDMRRRGF 300

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIP-EDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           C  +ENY+R+++ R  GE P TL ++ P +D LL VDE+HV +PQ+ GM+ GD  RK +L
Sbjct: 301 CPGMENYARHVSRRAAGEAPATLVDFFPDDDWLLVVDEAHVAVPQLRGMHAGDRARKTSL 360

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ-IIRPTGLVD 556
            E GFRL S +DNRPL   E+    P  +  +ATP +   + C    V   I+RPTG+VD
Sbjct: 361 VENGFRLKSALDNRPLTDAEFWAKVPQCVFATATPNADVFDMCGDDAVTSLIVRPTGVVD 420

Query: 557 PPVEIRSAR---TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           P V +  A       + +   +  AA  G R L+T LTK  AE + + L E  +   Y+H
Sbjct: 421 PVVSVVDAAAAGGLEDHLLARVAAAAAAGDRALVTTLTKASAEGIADLLTENGVAATYLH 480

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           S + + +R++ +R L+ G+   LVG NLLREGLD+P   LVA++ A+K+GFLRS TSLIQ
Sbjct: 481 SGLDSGKRLDALRRLKAGELQALVGCNLLREGLDLPMVSLVAVVGAEKQGFLRSATSLIQ 540

Query: 674 TIGRAARNVNSKVILYAD--TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE---- 727
           TIGRAAR+V+ +V+LY D  T++ +++ AIDET  RR  QL+HN +H++ P         
Sbjct: 541 TIGRAARHVDGRVLLYTDDGTVSDAMREAIDETNYRRAVQLDHNARHDVVPVGAGRNKSA 600

Query: 728 ---KIMEVIDPILLEDAATTNISIDAQQLSL 755
              +I++++ P   E         D    +L
Sbjct: 601 ENTEILDLLGPSKPEGGTYAPDFADPVDAAL 631


>gi|145356578|ref|XP_001422505.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582748|gb|ABP00822.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 690

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 237/617 (38%), Positives = 345/617 (55%), Gaps = 49/617 (7%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++  + PSGDQP+AI +  + +  R++  + L G TG+GKT+ +A V+ A ++PA+V+ P
Sbjct: 73  VRAPFEPSGDQPSAIERCKELLSDRDRKFVCLRGATGTGKTYVVANVLAAQRKPALVVVP 132

Query: 202 NKILAAQLYSEFKNFFPHNA-VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           NK LAAQ+  E + +   +  VE FVS++  Y PE+Y      Y EK S+I+  +D +RH
Sbjct: 133 NKTLAAQVARELRAYLGESHRVELFVSHFSVYVPESY--SNGRYTEKRSAIDSDLDALRH 190

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG---DSVEQKELLSSLVK-Q 315
            ATR+L+E     +VV+SVSC+YG+G    Y    + ++IG    +     +   L    
Sbjct: 191 RATRALVEPGKTPVVVASVSCLYGLGLPTDYVDAALTIEIGASASTFGIDGVEDKLRDDL 250

Query: 316 QYKRQ--DIGIIRGTFRVCGD-------SIEIFPSHLEDVAWRVSMFGNDIEEI------ 360
            Y+R    + I RG ++           +I I+P +LE  A  V + G+D   +      
Sbjct: 251 LYERVMPYMDIERGQYKTTAAPDDDNCFTITIWPPYLES-ALDVRVRGDDGVVVACEARG 309

Query: 361 SEFY-PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419
                PLT           I+   HY+TP   L  A+  IK EL  +  +L  EG  +EA
Sbjct: 310 RRVDLPLT-----------IWPRVHYITPAERLQRALVSIKAELDEQTKKLRAEGCAIEA 358

Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP--------EDSLL 471
            RLEQR   DL +L   G C   E+YSR+L    P EPP TL +Y           D LL
Sbjct: 359 DRLEQRTNADLTLLRELGWCPGAEHYSRHLRCAKPEEPPVTLLDYFSYSADSQTRRDWLL 418

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
             DESHV +PQ+  M+ GD  RK  L   G+RLPS +DNRPL  EE+    P  ++VSAT
Sbjct: 419 VADESHVMLPQLRAMHGGDRSRKTALVGAGYRLPSALDNRPLMSEEFWQRVPQALLVSAT 478

Query: 532 PGSWELE----QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
           PG  E E    +    +V+ ++RP+G++DPPV +     Q+E +   +N  A+ G R L+
Sbjct: 479 PGDIETEWVGGKSSDAMVDMVVRPSGVLDPPVHVVGKENQLEALAQRVNEKAKIGERSLV 538

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
            VLTK   EDL+ YL    +R  ++HSE+   +R E +  L+ G+ D +VG  LLREGLD
Sbjct: 539 CVLTKADTEDLSMYLNAHGVRADWVHSELTAPQRAEKLSKLQQGELDCIVGAQLLREGLD 598

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
           +P   LVAILDAD  GF+RS  SL+Q  GRAARN N + +L+AD+IT +++  ++E  RR
Sbjct: 599 LPSVSLVAILDADIPGFMRSARSLMQMAGRAARNKNGECVLFADSITAAMKEMMNEVDRR 658

Query: 708 REKQLEHNKKHNINPQS 724
           R KQ +HN  +N+ P +
Sbjct: 659 RVKQHKHNVDNNLVPVT 675


>gi|308811182|ref|XP_003082899.1| excinuclease ABC subunit B (ISS) [Ostreococcus tauri]
 gi|116054777|emb|CAL56854.1| excinuclease ABC subunit B (ISS) [Ostreococcus tauri]
          Length = 1294

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 231/610 (37%), Positives = 343/610 (56%), Gaps = 39/610 (6%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNK 203
             + PSGDQP+AI +    +   + K   L G TG+GKTF +A V+  M +PA+V+ PNK
Sbjct: 11  APFAPSGDQPSAIEKCAALLRDGDRKYVCLRGATGTGKTFVVANVLAGMDKPALVVVPNK 70

Query: 204 ILAAQLYSEFKNFFPH-NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
            LAAQ+  E + +    + VE FVS++  Y PE+Y      Y EK S+I+  +D +RH A
Sbjct: 71  TLAAQVARELRAYLGETHRVELFVSHFSVYVPESY--SNGRYTEKRSAIDADLDALRHRA 128

Query: 263 TRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG---DSVEQKELLSSLVK-QQY 317
           TR+L+E     ++V+SVSC+YG+G    Y    + ++IG        + L S L     Y
Sbjct: 129 TRALVEPGKTPVIVASVSCLYGLGLPTDYVDAALTIEIGAAASVHGIRGLESKLRDDLLY 188

Query: 318 KRQ--DIGIIRGTFRVCGD-------SIEIFPSHLED-VAWRVSMFGNDIEEISEFYPLT 367
           +R    + + RG F+           ++EI+P +LE  +  RV      +          
Sbjct: 189 ERVMPYMEVERGQFKTSPAPDDENCFTVEIWPPYLESALELRVRENDGTVVS-------C 241

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
             +  ++ ++ I+   HY+TP   L  A+  I+ EL+ +   L  EG  +EA RLEQR  
Sbjct: 242 QSRGCSMHSLTIWPRVHYITPAERLQRALVSIQNELEEQSKMLRGEGFAIEADRLEQRTN 301

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP---------EDSLLFVDESHV 478
            DL++L   G C   E+YSR+L G  P EPP TL +Y            D +L  DESHV
Sbjct: 302 ADLQLLRELGWCPGAEHYSRHLRGARPEEPPVTLLDYFSYSADGSKQKRDWILVADESHV 361

Query: 479 TIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
            +PQ+  M+ GD  RK +L   G+RLPS +DNRPL  EE+    P  ++VSATPG  E  
Sbjct: 362 MLPQLRAMHGGDRSRKLSLVAAGYRLPSALDNRPLMSEEFWERVPQALLVSATPGDIETS 421

Query: 539 ----QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
               +    +V+ ++RP+G++DPPV I     Q+E +   ++  A+ G R L+ VLTK  
Sbjct: 422 WVGGKSSDAMVDMVVRPSGVLDPPVHIIGKENQLEQLAQRVSEKAKLGERSLVCVLTKAD 481

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            EDL+ YL  + +R  ++HSE+   +R E +  L+ G+ D +VG  LLREGLD+P   LV
Sbjct: 482 TEDLSMYLNAQGVRADWVHSELTAPQRAEKLSKLQRGELDCIVGAQLLREGLDLPSVSLV 541

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
           AILDAD  GF+RS  SL+Q  GRAARN + + +L+AD++T +++  + E  RRREKQ  H
Sbjct: 542 AILDADVPGFMRSARSLMQMAGRAARNKHGECVLFADSVTGAMRDMMSEVDRRREKQHRH 601

Query: 715 NKKHNINPQS 724
           N ++N+ P +
Sbjct: 602 NVENNLTPTT 611


>gi|146318678|ref|YP_001198390.1| helicase subunit of the DNA excision repair complex [Streptococcus
           suis 05ZYH33]
 gi|145689484|gb|ABP89990.1| Helicase subunit of the DNA excision repair complex [Streptococcus
           suis 05ZYH33]
          Length = 403

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 212/388 (54%), Positives = 281/388 (72%), Gaps = 4/388 (1%)

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
              E EG+LLEAQRL+QR  YD+EML   G    +ENYSR++ GR+ GEPP TL ++ PE
Sbjct: 19  QVFEAEGKLLEAQRLKQRTDYDIEMLREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPE 78

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           D L+ +DESH+T+ QI GMY GD  RK  L  YGFRLPS +DNRPLR EE+       + 
Sbjct: 79  DYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVY 138

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
           VSATPG +E+EQ +  +VEQIIRPTGL+DP VE+R    Q++D+  EIN   ++G R  +
Sbjct: 139 VSATPGDYEMEQTE-TVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARVEKGERTFI 197

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           T LTK+MAEDLT+YL E  ++V+YMHS++KTLER EIIRDLRLG FDVL+GINLLREG+D
Sbjct: 198 TTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGID 257

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
           +PE  LVAILDADKEGFLR++  LIQTIGRAARN    VI+YAD +T+S++ A++ET RR
Sbjct: 258 VPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADKVTESMRKAMEETARR 317

Query: 708 REKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSL 767
           R+ Q+ +N++H I PQ++K++I ++I    +  A T +        +L+K + KA +K L
Sbjct: 318 RQIQMAYNEEHGIIPQTIKKEIRDLIS---VTKAVTQDKEEVVDFNALNKDERKAMIKKL 374

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKS 795
             QM  AA+ L+FE AA+IRD +  LK+
Sbjct: 375 EGQMQEAAEVLDFELAAQIRDMVIELKN 402


>gi|218262779|ref|ZP_03477137.1| hypothetical protein PRABACTJOHN_02816 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223139|gb|EEC95789.1| hypothetical protein PRABACTJOHN_02816 [Parabacteroides johnsonii
           DSM 18315]
          Length = 393

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 199/391 (50%), Positives = 268/391 (68%), Gaps = 3/391 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA L  GI S    Q LLGVTGSGKTFT+A VI+ +++P ++++
Sbjct: 3   FELSSPFSPTGDQPEAIAALSDGIKSGVPFQTLLGVTGSGKTFTIANVIKEVRKPTLILS 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP+NAVEYFVSYYDYYQPEAY+P TDTYIEK+  IN++ID++R 
Sbjct: 63  HNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLPTTDTYIEKDLQINDEIDKLRL 122

Query: 261 SATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            AT SLL  R D IVVSSVSC+YG+    ++++ +V L+ G  +++ +LL   V   Y  
Sbjct: 123 RATASLLSGRKDVIVVSSVSCLYGMADPTAFAEKVVHLEKGMRIDRDKLLRRFVDALYVN 182

Query: 320 QDIGIIRGTFRVCGDSIEIFPS--HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
             I   RG FRV GD+++IFP+    +  A+R+  + ++++ IS F P TGQ+I   + +
Sbjct: 183 NKIEFNRGCFRVNGDTVDIFPAIETFDGAAYRIEFWDDEVDRISSFDPQTGQEIDEQDEL 242

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY  + +VT +  +NTA+  I  +L  ++  L + G+  EA+RL +R+T+DLEM+   G
Sbjct: 243 NIYPTNLFVTTQERINTAIGQIDVDLGTQVNFLREIGKPYEAKRLYERVTFDLEMIRELG 302

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            C  IENYSRY  GR  GE P  L +Y P+D LL VDESHVTIPQI  MY GD+ RK  L
Sbjct: 303 HCSGIENYSRYFDGRQAGERPFCLLDYFPKDFLLVVDESHVTIPQIRAMYGGDYSRKKNL 362

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
            EYGFRLP+ MDNRPL F+E+  L P  I V
Sbjct: 363 VEYGFRLPAAMDNRPLMFDEFESLTPLAIYV 393


>gi|301306934|ref|ZP_07212978.1| putative excinuclease ABC subunit B [Escherichia coli MS 124-1]
 gi|300837860|gb|EFK65620.1| putative excinuclease ABC subunit B [Escherichia coli MS 124-1]
          Length = 380

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 218/374 (58%), Positives = 272/374 (72%), Gaps = 8/374 (2%)

Query: 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG 489
           +EM+   G C  IENYSR+L+GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRG
Sbjct: 1   MEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 60

Query: 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
           D  RK TL EYGFRLPS +DNRPL+FEE+  L P TI VSATPG++ELE+  G +V+Q++
Sbjct: 61  DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 120

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           RPTGL+DP +E+R   TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RV
Sbjct: 121 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 180

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           RY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ 
Sbjct: 181 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 240

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           SLIQTIGRAARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+
Sbjct: 241 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 300

Query: 730 MEVID--------PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
           ++++                +   +  D   + +S K  +  +  L   M   A NL FE
Sbjct: 301 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 360

Query: 782 EAARIRDEIKRLKS 795
           EAA+IRD++ +L+ 
Sbjct: 361 EAAQIRDQLHQLRE 374


>gi|330880879|gb|EGH15028.1| excinuclease ABC subunit B [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 374

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 229/375 (61%), Positives = 284/375 (75%), Gaps = 1/375 (0%)

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P+  +  A RV +F +++E +S F PLTG+ IR +     Y  SHYVTPR TL  AM+ I
Sbjct: 1   PAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFYPKSHYVTPRETLIEAMEGI 60

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
           K EL+ RL  L  + +L+EAQRLEQR  +DLEM+   G C  IENYSRYL+GR  G PPP
Sbjct: 61  KVELQERLEYLRTQNKLVEAQRLEQRTRFDLEMMLELGYCNGIENYSRYLSGRPSGAPPP 120

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519
           TLF+Y+P D+LL +DESHV++PQ+  MY+GD  RK TL EYGFRLPS +DNRP+RF+EW 
Sbjct: 121 TLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEYGFRLPSALDNRPMRFDEWE 180

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
            + P TI VSATPG++E E   G +VEQ++RPTGLVDP +EIR A TQV+D+  EI+   
Sbjct: 181 AISPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDPQIEIRPALTQVDDLLSEIHKRT 239

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               R+L+T LTKRM+EDLT+YL +  +RVRY+HS++ T+ER+EIIRDLRLG FDVLVGI
Sbjct: 240 ALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDTVERVEIIRDLRLGTFDVLVGI 299

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           NLLREGLD+PE  LVAILDADKEGFLRS  SLIQTIGRAARN+N + ILYAD IT S++ 
Sbjct: 300 NLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRAARNLNGRAILYADRITGSMER 359

Query: 700 AIDETTRRREKQLEH 714
           AI ET RRR+KQL  
Sbjct: 360 AIGETERRRDKQLAF 374


>gi|254226407|ref|ZP_04919995.1| excinuclease ABC subunit B [Vibrio cholerae V51]
 gi|125621096|gb|EAZ49442.1| excinuclease ABC subunit B [Vibrio cholerae V51]
          Length = 365

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 200/361 (55%), Positives = 263/361 (72%), Gaps = 1/361 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ +DY P+GDQP AI QLL+G+ +    Q LLGVTGSGKTFT+A VI   QRP I++A
Sbjct: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR 
Sbjct: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT++LLER D ++V+SVS IYG+G  +SY +M++ L+ GD + Q+++L  L + QY R 
Sbjct: 125 SATKALLERKDVVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKI 379
           D+   RG FRV G+ I+IFP+  +  A RV MF +++E IS F PLTG  + R++    I
Sbjct: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVIMSRDLARFTI 244

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           Y  +HYVTPR  +  A++ IK EL++R   L    +LLE QR+ QR  +D+EM+   G C
Sbjct: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IENYSRYL+GR  GEPPPTLF+Y+P D LL +DESHVT+PQI  M++GD  RK TL E
Sbjct: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364

Query: 500 Y 500
           +
Sbjct: 365 F 365


>gi|255087270|ref|XP_002505558.1| exinuclease ABC subunits B and C-containing protein [Micromonas sp.
           RCC299]
 gi|226520828|gb|ACO66816.1| exinuclease ABC subunits B and C-containing protein [Micromonas sp.
           RCC299]
          Length = 1672

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 229/660 (34%), Positives = 346/660 (52%), Gaps = 85/660 (12%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVM 199
           ++  + P+GDQP AI++ +K +     +   L G TG+GKTF +A VI+ + R  P +V+
Sbjct: 72  LRAPFAPAGDQPTAISECVKHLRDDNARFACLRGATGTGKTFVVANVIDTIARDKPTLVV 131

Query: 200 APNKILAAQLYSEFKNFFPH-NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            PNK LAAQ+  E + +    + VE FVS++  Y PE++      Y+EK S+I+  +D +
Sbjct: 132 VPNKTLAAQVARELRAYLRDTHRVELFVSHFSLYVPESF--SRGRYVEKRSAIDPNLDAL 189

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE---QKELLSSLVK- 314
           RH ATR+L+E ++ +VV+SVSC+YG+G    Y    + L+   S     +  L + L + 
Sbjct: 190 RHRATRALVESDNVVVVASVSCLYGMGMPADYVDARLVLEPNASHGHGGRDALGARLTEG 249

Query: 315 QQYK-------------RQDIG---IIRGTFRV-----CGD---SIEIFPSHLEDVAWRV 350
             Y+               D+    ++RG +        G     + ++P + +     +
Sbjct: 250 LLYEPAGAGAGGESPAPHDDVVADRVMRGQWAWGPVGIRGSELRRLVVWPPYEDSP---L 306

Query: 351 SMFGNDIEEISEF--YPL-TGQ--------KIRNV----------ETIKIYANSHYVTPR 389
               +    +  F   P  T +         + +V          + + ++   H++TP 
Sbjct: 307 QFDLDKEGRLVGFLRTPQGTNRDGAKRSAYVLEDVCNPNPLPPPPQRVTLWPRQHHITPP 366

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
             L  A   I  EL+ R  EL   G  +EA+RLEQR   D+ +L   G C   E+YSR+L
Sbjct: 367 ERLKLATAAIGRELRERCAELRANGHGMEAERLEQRTNADVALLNELGWCPGAEHYSRHL 426

Query: 450 TGRNPGEPPPTLFEYIPED-------------------------SLLFVDESHVTIPQIS 484
            GR  GEPP TL +Y+  +                          LL  DESHV +PQ+ 
Sbjct: 427 GGRAEGEPPVTLLDYLNFNTSDPPTRPPGAGAGAGADARARHRGWLLVADESHVMLPQLR 486

Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544
            M+ GD  RK  L   G+RLPS +DNRPL FEE+    P  ++VSATPG+ E E CQ  +
Sbjct: 487 AMHGGDRSRKLGLVAGGYRLPSALDNRPLTFEEFWERVPQALLVSATPGNVENEWCQSRM 546

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           V+ ++RP+G+VDPP++I     Q+  +   +   A +G   L+  LTK   EDL  YL E
Sbjct: 547 VDMVVRPSGVVDPPIKIFPRANQLPQLAAAVRERAARGEASLVCALTKADCEDLAGYLNE 606

Query: 605 R-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
               R  ++HSE+   +R E ++ L+ G+ DVLVG  LLREGLD+P+  LVA+LDA   G
Sbjct: 607 IGGCRADWLHSELTAPQRAEKLQALQAGEIDVLVGAQLLREGLDVPQVSLVAVLDAGVPG 666

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYAD-TITKSIQLAIDETTRRREKQLEHNKKHNINP 722
           F+RS  SL+Q  GRAARN   +  L+AD   T +I  A+ E +RRREKQ + N+++ I P
Sbjct: 667 FMRSARSLMQMHGRAARNARGECHLFADAPFTDAINDAVAEVSRRREKQRDFNERNGIVP 726


>gi|313632009|gb|EFR99124.1| UvrABC system protein B [Listeria seeligeri FSL N1-067]
          Length = 364

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 194/366 (53%), Positives = 261/366 (71%), Gaps = 3/366 (0%)

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EM+E  G C  IENYSR+L+ R  G  P TL +Y P+D  + +DESHVT+PQI GM+ GD
Sbjct: 1   EMMEEMGYCSGIENYSRHLSLRPAGVTPYTLLDYFPDDFQMVIDESHVTMPQIRGMFNGD 60

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             RK  L ++GFRLPS +DNRPLR EE+       + +SATPG +ELE+    ++EQIIR
Sbjct: 61  QARKQMLVDHGFRLPSALDNRPLRLEEFEKHINQIMFISATPGPYELEK-NPDVIEQIIR 119

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PTGL+DP VEIR  + Q++D+ DEIN   ++  R+L+T LTK+M+EDLT YL E  ++V+
Sbjct: 120 PTGLLDPIVEIRPIQGQIDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQ 179

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           Y+HSEVKTLERIEIIRDLRLG +DV+VGINLLREG+D+PE  LVAILDADKEGFLRS+ S
Sbjct: 180 YLHSEVKTLERIEIIRDLRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERS 239

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           LIQT+GRAARN N +VI+YAD +T S++ +I ET RRR+ Q+E+N+KH I P ++K++I 
Sbjct: 240 LIQTMGRAARNENGRVIMYADKMTDSMRNSISETERRRKIQIEYNEKHGITPMTIKKEIR 299

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            +I      D        D  +  +SKK+    ++ +  +M  AA  L+FE AA +RD +
Sbjct: 300 GIIAATSAADEREAIKQHDLSK--MSKKERDVFIEGMEHEMKEAAKALDFERAAELRDAL 357

Query: 791 KRLKSS 796
             +K+ 
Sbjct: 358 LEIKAE 363


>gi|258545354|ref|ZP_05705588.1| excinuclease ABC subunit B [Cardiobacterium hominis ATCC 15826]
 gi|258519387|gb|EEV88246.1| excinuclease ABC subunit B [Cardiobacterium hominis ATCC 15826]
          Length = 349

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 197/345 (57%), Positives = 253/345 (73%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           FQ+ ++Y PSGDQP AIAQLL+G+      Q LLGVTGSGKTFTMA +I   QRPA+++A
Sbjct: 5   FQLVSNYQPSGDQPTAIAQLLEGLEDGLAKQTLLGVTGSGKTFTMANIIARAQRPALILA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK LAAQLY E + FFPHNAVEYFVSYYDYYQPEAYVP +DT+IEK++SINE I++MR 
Sbjct: 65  PNKTLAAQLYGEMREFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMRL 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT+++LER D IVV+SVS IYG+G    Y QM + L  G++++  ++ S L + QY R 
Sbjct: 125 SATKAILERRDTIVVASVSSIYGLGDPSQYRQMRLHLSRGETIDPHDVFSHLAELQYTRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI ++RGTFRV GD I+I P+  +  A R+ +F + IE I  F PLTG+    V  I IY
Sbjct: 185 DIQLLRGTFRVKGDVIDIMPAESDWYAVRLELFDDTIENIRYFDPLTGEMHEAVPRITIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +HY TPR T+   ++ IK EL+ R+  L  + +L+EAQRLEQR  +DLEM+   G C 
Sbjct: 245 PKTHYATPRATVLNTIEQIKAELRERVAALTAQNKLVEAQRLEQRTRFDLEMMVELGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
            IENYSRYL+GR  GEPPPTL +Y+P D+LL +DESHVTIPQ++G
Sbjct: 305 GIENYSRYLSGREAGEPPPTLHDYLPPDALLMIDESHVTIPQLNG 349


>gi|168069736|ref|XP_001786560.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162661005|gb|EDQ48628.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 201/378 (53%), Positives = 260/378 (68%), Gaps = 4/378 (1%)

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A+  I+ EL+ RL EL  +G+LLEAQRLEQR  YD+EM++  G C  IENYS  LT R  
Sbjct: 4   ALVNIERELEERLEELRSQGKLLEAQRLEQRTRYDIEMMKEVGFCSGIENYSGPLTFRER 63

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
           G  P TL +Y P+D L+ VDESHVT+PQI  MY GD  RK  L E+GFRLPS +DNRPL 
Sbjct: 64  GATPYTLLDYFPDDMLIVVDESHVTLPQIRAMYNGDRARKTVLVEHGFRLPSALDNRPLT 123

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           FEE+       I VSATPG +E+E C   +VEQIIRPTGL+DP +E+R    Q++D+  E
Sbjct: 124 FEEFESKVNQIIYVSATPGPYEIEHC-DTMVEQIIRPTGLLDPVIEVRPTEGQIDDLIGE 182

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I     +  R+L+T LTK+MAEDLT+YL E  I+VRY+HS++KTLER+ I+RDLRLG F 
Sbjct: 183 IRERIDRDERVLVTTLTKKMAEDLTDYLKEIGIKVRYLHSDIKTLERMAILRDLRLGTFH 242

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VL+GINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAARN    V++Y D IT
Sbjct: 243 VLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNSEGFVLMYGDKIT 302

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
           +S+  AI ET RRR  Q+ +N++H I PQ++++K+ +VI+   + ++         +   
Sbjct: 303 ESMDKAIKETQRRRTMQIAYNEQHGITPQTIRKKVRDVIEATKVAESKADPFGACPECDG 362

Query: 755 LSKK---KGKAHLKSLRK 769
           L  K     +  +    K
Sbjct: 363 LGVKMIVDPELLIPDREK 380


>gi|291533169|emb|CBL06282.1| Helicase subunit of the DNA excision repair complex [Megamonas
           hypermegale ART12/1]
          Length = 346

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 181/346 (52%), Positives = 241/346 (69%)

Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF 183
             H        +++   F+++  + P+GDQP AI  L +GI + +  Q+LLG TG+GKTF
Sbjct: 1   MVHIPKLNTLQTENKIPFKVEAPFEPTGDQPQAIKALAQGIQNGQTSQVLLGATGTGKTF 60

Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243
           T+AK+IE +Q+P +V+A NK LAAQL SEFK FFPHNAVEYFVSYYDYYQPEAY+ +TDT
Sbjct: 61  TIAKLIEKVQKPTLVIAHNKTLAAQLASEFKEFFPHNAVEYFVSYYDYYQPEAYIAQTDT 120

Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303
           YIEK+SSIN++ID++RHSAT SL ER D I+V+SVSCIYG+GS E Y  +++ ++ G   
Sbjct: 121 YIEKDSSINDEIDKLRHSATCSLFERRDVIIVASVSCIYGLGSPEDYYDLVLSVREGQEY 180

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
            + ++L  LV  QY+R DI   RG FRV GD IEIFP+   D A R+ +FG++++ I E 
Sbjct: 181 PRDDILRKLVSIQYERNDINFDRGKFRVRGDVIEIFPAGYSDRAIRIELFGDEVDRILEV 240

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
             LTG+     + I IY  SHYVT +  +  A+  I+EEL+ +L  LE + +LLEAQRL+
Sbjct: 241 DTLTGEVYGQRKHILIYPASHYVTSKEHMKEAIDSIQEELQQQLKILEDDNKLLEAQRLK 300

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
           QR  YDLE +E  G C  IENYSR+LTGR  GE P TL +Y P+D 
Sbjct: 301 QRTNYDLETMEEMGYCSGIENYSRHLTGRKAGEAPYTLLDYFPDDF 346


>gi|289765122|ref|ZP_06524500.1| excinuclease ABC subunit B [Fusobacterium sp. D11]
 gi|289716677|gb|EFD80689.1| excinuclease ABC subunit B [Fusobacterium sp. D11]
          Length = 389

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 206/381 (54%), Positives = 277/381 (72%), Gaps = 2/381 (0%)

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
           ++ + +LLEAQRL+QR  YDLEM+   G C+ IENYSRYL G+NPGE P TLFEY P+D 
Sbjct: 1   MKMKKKLLEAQRLKQRTEYDLEMITEIGYCKGIENYSRYLAGKNPGETPDTLFEYFPKDF 60

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLF+DESH+T+PQI GMY GD  RK +L E GFRL + +DNRPLRFEE+      T+ +S
Sbjct: 61  LLFIDESHITVPQIRGMYNGDRARKESLVENGFRLKAALDNRPLRFEEFREKSNQTVFIS 120

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
           ATPG +ELE     I EQ+IRPTG+VDP +EIR  + QV+D+ DEI   A +  R+L+T 
Sbjct: 121 ATPGDFELEVSDNHIAEQLIRPTGIVDPEIEIRPTKNQVDDLLDEIRKRAAKKERVLVTT 180

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           LTK++AE+LTEY  E  ++V+YMHS++ TLERIEIIR LR G+ DV++GINLLREGLDIP
Sbjct: 181 LTKKIAEELTEYYIELGVKVKYMHSDIDTLERIEIIRALRKGEIDVIIGINLLREGLDIP 240

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           E  LVAI++ADKEGFLRS+ SL+QTIGRAARNV  +VILYAD +T S++ AI ET RRR+
Sbjct: 241 EVSLVAIMEADKEGFLRSRRSLVQTIGRAARNVEGRVILYADIMTDSMKEAITETERRRK 300

Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRK 769
            Q E+N  ++I+P+S+ ++I E  D I L+         + +++  +K   +  +  L K
Sbjct: 301 IQKEYNAYNHIDPKSIVKEIAE--DLINLDYGIEEKKFENNKKVFRNKADIEKEITKLEK 358

Query: 770 QMHLAADNLNFEEAARIRDEI 790
           ++    + L+FE+A  +RDE+
Sbjct: 359 KIKKLVEELDFEQAIILRDEM 379


>gi|256027142|ref|ZP_05440976.1| excinuclease ABC subunit B [Fusobacterium sp. D11]
          Length = 387

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 206/378 (54%), Positives = 275/378 (72%), Gaps = 2/378 (0%)

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           + +LLEAQRL+QR  YDLEM+   G C+ IENYSRYL G+NPGE P TLFEY P+D LLF
Sbjct: 2   KKKLLEAQRLKQRTEYDLEMITEIGYCKGIENYSRYLAGKNPGETPDTLFEYFPKDFLLF 61

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           +DESH+T+PQI GMY GD  RK +L E GFRL + +DNRPLRFEE+      T+ +SATP
Sbjct: 62  IDESHITVPQIRGMYNGDRARKESLVENGFRLKAALDNRPLRFEEFREKSNQTVFISATP 121

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
           G +ELE     I EQ+IRPTG+VDP +EIR  + QV+D+ DEI   A +  R+L+T LTK
Sbjct: 122 GDFELEVSDNHIAEQLIRPTGIVDPEIEIRPTKNQVDDLLDEIRKRAAKKERVLVTTLTK 181

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           ++AE+LTEY  E  ++V+YMHS++ TLERIEIIR LR G+ DV++GINLLREGLDIPE  
Sbjct: 182 KIAEELTEYYIELGVKVKYMHSDIDTLERIEIIRALRKGEIDVIIGINLLREGLDIPEVS 241

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           LVAI++ADKEGFLRS+ SL+QTIGRAARNV  +VILYAD +T S++ AI ET RRR+ Q 
Sbjct: 242 LVAIMEADKEGFLRSRRSLVQTIGRAARNVEGRVILYADIMTDSMKEAITETERRRKIQK 301

Query: 713 EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMH 772
           E+N  ++I+P+S+ ++I E  D I L+         + +++  +K   +  +  L K++ 
Sbjct: 302 EYNAYNHIDPKSIVKEIAE--DLINLDYGIEEKKFENNKKVFRNKADIEKEITKLEKKIK 359

Query: 773 LAADNLNFEEAARIRDEI 790
              + L+FE+A  +RDE+
Sbjct: 360 KLVEELDFEQAIILRDEM 377


>gi|255523394|ref|ZP_05390363.1| type III restriction protein res subunit [Clostridium
           carboxidivorans P7]
 gi|255512852|gb|EET89123.1| type III restriction protein res subunit [Clostridium
           carboxidivorans P7]
          Length = 337

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 177/335 (52%), Positives = 241/335 (71%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + P+GDQP AI  ++K I+ +EK Q LLGVTGSGKTFTMA +IE +++P +
Sbjct: 1   MKEFKIHSKFKPTGDQPQAIDSIVKSINDKEKFQTLLGVTGSGKTFTMANIIERVKKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+A NK LAAQL SEF+ FFP N VEYFVSYYDYYQPEAYV +TDTYIEK++SIN++ID+
Sbjct: 61  VLAHNKTLAAQLCSEFREFFPENCVEYFVSYYDYYQPEAYVAQTDTYIEKDASINDEIDK 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +RHSAT +LLER D +VV+SVSCIYG+G+ E Y ++ + L+ G + ++ E+L  LV+ QY
Sbjct: 121 LRHSATSALLERTDVVVVASVSCIYGLGNPEEYKKLTLSLREGMTKDRDEVLKKLVEIQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R +I  +RGTFRV GD ++IFP+     A R+  FG++I+ I EF  LTG+ I   + +
Sbjct: 181 ERNEINFVRGTFRVKGDVLDIFPASSSGKAIRIEFFGDEIDRIKEFDALTGETIGTRKHV 240

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I+  SH+ T R  L  A+K I+ EL+ R+ EL  + +LLEAQRL+QR  +D+EM+   G
Sbjct: 241 SIFPASHFATSRERLEIAIKSIESELEERVRELTSQDKLLEAQRLKQRTNFDIEMMREVG 300

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
            C  IENYSR L GR  G PP TL +Y PED   F
Sbjct: 301 YCSGIENYSRILDGRAKGTPPQTLIDYFPEDYFTF 335


>gi|12620111|gb|AAG60567.1|AF250772_1 excision nuclease subunit B [uncultured bacterium pCosHE1]
          Length = 333

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 188/333 (56%), Positives = 234/333 (70%)

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
            QY R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTG     +
Sbjct: 1   LQYTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGHVESVI 60

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           +   IY  +HYVTPR  +  AM+ IKEEL  R   L    +LLE QRL QR  +DLEM+ 
Sbjct: 61  QRYTIYPKTHYVTPRERIVQAMEEIKEELAERRKVLLANNKLLEEQRLSQRTQFDLEMMN 120

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
             G C  IENYSR+L+GR PGEPPPTLF+Y+P D LL +DESHVTIPQI GMYRGD  RK
Sbjct: 121 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARK 180

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            TL EYGFRLPS +DNRP++FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL
Sbjct: 181 ETLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGL 240

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP +E+R   TQV+D+  EI   +    R+L+T LTKRM EDLTEYL E   + RY HS
Sbjct: 241 LDPVIEVRPVATQVDDLLSEIRARSAINERVLVTTLTKRMGEDLTEYLEEHGEKGRYFHS 300

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           ++ T+ER+EIIRDLRLG    L GINLLR GLD
Sbjct: 301 DIDTVERMEIIRDLRLGDLTCLGGINLLRXGLD 333


>gi|88194538|ref|YP_499333.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|87202096|gb|ABD29906.1| excinuclease ABC, B subunit [Staphylococcus aureus subsp. aureus
           NCTC 8325]
          Length = 343

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 174/331 (52%), Positives = 237/331 (71%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F++ +D+ P GDQP AI ++++GI + ++ Q LLG TG+GKTFTM+ VI+ + +P +++
Sbjct: 6   PFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLII 65

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
           A NK LA QLYSEFK FFP N VEYFVSYYDYYQPEAYVP TDT+IEK++SIN++ID++R
Sbjct: 66  AHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLR 125

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           HSAT +L ER+D I+++SVSCIYG+G+ E Y  ++V +++G  +++ ELL  LV  QY R
Sbjct: 126 HSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTR 185

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            DI   RGTFRV GD +EIFP+  E++  RV  FG++I+ I E   LTG+ ++  E   I
Sbjct: 186 NDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAI 245

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +  SH+VT    L  A++ I++EL+ RL EL  E +LLEAQRLEQR  YDLEM+   G C
Sbjct: 246 FPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFC 305

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
             IENYS +LT R  G  P TL +Y  +D L
Sbjct: 306 SGIENYSVHLTLRPLGSTPYTLLDYFGDDWL 336


>gi|256045131|ref|ZP_05448032.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1]
 gi|265991567|ref|ZP_06104124.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1]
 gi|263002351|gb|EEZ14926.1| excinuclease ABC subunit B [Brucella melitensis bv. 1 str. Rev.1]
          Length = 393

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 211/393 (53%), Positives = 274/393 (69%), Gaps = 26/393 (6%)

Query: 11  KDSRIQSISTRVD---DLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHR-KNAAKRMLI 66
           KD  I+    + D   +     F    L      +AD  + I  EA K R KN  +   I
Sbjct: 5   KDKHIRDSRNKADGFGEAPQAGFSGAPLSG---TIADWAKEIGDEAAKPRAKNPKQPKKI 61

Query: 67  HQRENTASK------------------GEFQSQSSISMSEKQTREISEQTMTPSVQALAR 108
            +R   AS+                        + + +S ++   +S    T +VQALA 
Sbjct: 62  PERSKEASRTGRGTSMGGAASAKERTAAGLNPVAGLDISLEEAAGLSPSGATATVQALAD 121

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           LIQS NPL K+G++WTPHR          I   +M+T + PSGDQP AI  L++G+ +++
Sbjct: 122 LIQSGNPLFKHGELWTPHRPARPEKSEGGIPI-RMETSFEPSGDQPTAIRDLVEGLENQD 180

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           + Q+LLGVTGSGKTFTMA+VIE  QRPA+++APNK LAAQLY EFK+FFP+NAVEYFVSY
Sbjct: 181 RTQVLLGVTGSGKTFTMAQVIEKTQRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSY 240

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           YDYYQPEAYVPR+DTYIEKESSINEQIDRMRHSATR+LLER+D I+V+SVSCIYGIGSVE
Sbjct: 241 YDYYQPEAYVPRSDTYIEKESSINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVE 300

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           +Y+ M  ++KIGD ++Q++LL+ LV QQYKRQDI  +RG+FRV GD+IEIFP+HLED AW
Sbjct: 301 TYTAMTFEMKIGDRLDQRQLLADLVAQQYKRQDINFVRGSFRVRGDTIEIFPAHLEDRAW 360

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           R+S+FG++IE I+EF PLTGQK  +++++KIYA
Sbjct: 361 RISLFGDEIETITEFDPLTGQKTGDLKSVKIYA 393


>gi|88194540|ref|YP_499336.1| excinuclease ABC subunit B [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|87202098|gb|ABD29908.1| excinuclease ABC subunit B, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
          Length = 324

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 171/325 (52%), Positives = 235/325 (72%), Gaps = 2/325 (0%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +DESHVT+PQ+ GMY GD  RK  L ++GFRLPS +DNRPL+FEE+       + VSAT
Sbjct: 1   MIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSAT 60

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
           PG +E+E     +VEQIIRPTGL+DP +E+R    Q++D+  EI    ++  R+L+T LT
Sbjct: 61  PGPYEIEHT-DKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLT 119

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           K+M+EDLT Y+ E  I+V Y+HSE+KTLERIEIIRDLR+G +DV+VGINLLREG+DIPE 
Sbjct: 120 KKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEV 179

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
            LV ILDADKEGFLRS  SLIQTIGRAARN   +VI+YAD +T S++ AIDET RRRE Q
Sbjct: 180 SLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQ 239

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771
           ++HN+KH I P+++ +KI ++I   + E+    + +       ++KK+ +  + ++ K+M
Sbjct: 240 MKHNEKHGITPKTINKKIHDLISATV-ENDENNDKAQTVIPKKMTKKERQKTIDNIEKEM 298

Query: 772 HLAADNLNFEEAARIRDEIKRLKSS 796
             AA +L+FE+A  +RD +  LK+ 
Sbjct: 299 KQAAKDLDFEKATELRDMLFELKAE 323


>gi|269968277|ref|ZP_06182302.1| putative UvrABC system protein B [Vibrio alginolyticus 40B]
 gi|269827103|gb|EEZ81412.1| putative UvrABC system protein B [Vibrio alginolyticus 40B]
          Length = 334

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 176/331 (53%), Positives = 240/331 (72%), Gaps = 10/331 (3%)

Query: 478 VTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537
           +T+PQI  MY+GD  RK TL E+GFRLPS +DNRPL+FEE+  L P TI VSATPG++EL
Sbjct: 1   MTVPQIGAMYKGDRSRKETLVEFGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNYEL 60

Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           E+  G + +Q++RPTGL+DP +E+R   TQV+D+  EI + A +  R+L+T LTKRMAED
Sbjct: 61  EKSAGDVADQVVRPTGLLDPELEVRPVATQVDDLLSEIRIRAAKDERVLVTTLTKRMAED 120

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LTEYL+E +++VRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAIL
Sbjct: 121 LTEYLHEHDVKVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 180

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           DADKEGFLRS+ SLIQTIGRAARN+  K ILYAD IT S++ A+DET RRREKQ  +N++
Sbjct: 181 DADKEGFLRSERSLIQTIGRAARNIEGKAILYADRITNSMKKAMDETNRRREKQEAYNEE 240

Query: 718 HNINPQSVKEKIMEVIDPILLEDAA----------TTNISIDAQQLSLSKKKGKAHLKSL 767
             I+PQ++K  I ++++   +  +           +          +LS ++ +  +  L
Sbjct: 241 MGISPQALKRNIKDIMELGDITKSKRQRNTKQVPLSKVAEPSQTYEALSPQQLEKEISRL 300

Query: 768 RKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
              M+  A +L FE AA+ RDEI++L++   
Sbjct: 301 EAAMYQHAQDLEFELAAQKRDEIEKLRAQFI 331


>gi|224369719|ref|YP_002603883.1| UvrB3 [Desulfobacterium autotrophicum HRM2]
 gi|223692436|gb|ACN15719.1| UvrB3 [Desulfobacterium autotrophicum HRM2]
          Length = 330

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 173/322 (53%), Positives = 224/322 (69%)

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242
            TMA +I  M++P +++APNK LAAQLY+E K  FP N VEYFVSYY YYQPEAY+P +D
Sbjct: 1   MTMANIISQMEKPNLIIAPNKTLAAQLYNELKMLFPDNCVEYFVSYYAYYQPEAYIPSSD 60

Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302
           TYI+K+SSINE ID+MRHSATRS+L R D IVV+SVSCIYG+G+ E Y  + V L     
Sbjct: 61  TYIQKDSSINELIDKMRHSATRSVLARKDVIVVASVSCIYGLGAPEEYLDLRVTLDRDME 120

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
           + ++++    V  QY R D+   RGTFRV GD +EIFP++ E+   R+  FG+ IEEISE
Sbjct: 121 ISREDVNRKFVDIQYTRNDVDFHRGTFRVRGDRLEIFPAYEENKTIRIDFFGDTIEEISE 180

Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
              L G  I+  + + IY  SHYVT + T   A++ I  ELK RL  L     L+EAQRL
Sbjct: 181 IDALQGTVIKQFDQMAIYPASHYVTNKKTQKQAVERIVIELKERLAFLNDHNLLVEAQRL 240

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482
           E+   YDLE+LE  G C  IENYSR+LTGR PG+PPPTL +YI +D LLF DE+H+++ Q
Sbjct: 241 EEHTRYDLEILEEIGYCNGIENYSRHLTGRAPGQPPPTLLDYIDQDFLLFFDENHISVSQ 300

Query: 483 ISGMYRGDFHRKATLAEYGFRL 504
           +  +Y+ D  RK TL ++GFRL
Sbjct: 301 LGAIYKADRSRKETLVKHGFRL 322


>gi|258545353|ref|ZP_05705587.1| excinuclease ABC subunit B [Cardiobacterium hominis ATCC 15826]
 gi|258519456|gb|EEV88315.1| excinuclease ABC subunit B [Cardiobacterium hominis ATCC 15826]
          Length = 319

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 180/319 (56%), Positives = 227/319 (71%), Gaps = 2/319 (0%)

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
           +GMYRGD  RK TL +YGFRLPS +DNRPLRFEE+  L P TI +SATPG +E E   G 
Sbjct: 1   NGMYRGDRSRKETLVDYGFRLPSALDNRPLRFEEFEALAPQTIYISATPGDYEREHS-GQ 59

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
            VEQ++RPTGL+DP VEIR   +QVED+  EI        R+L+T LTK+MAEDLT+YL 
Sbjct: 60  TVEQVVRPTGLLDPEVEIRPVDSQVEDILGEIRERVAADERVLITTLTKKMAEDLTDYLM 119

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           E ++RVRY+HS+V T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAI DADKEG
Sbjct: 120 EHDVRVRYIHSDVGTVERMEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAIFDADKEG 179

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           FLR + +LIQTIGRAARN   K ILYA  IT+S+Q A+DET RRREKQ ++N+ H I PQ
Sbjct: 180 FLRGERALIQTIGRAARNARGKAILYAAHITRSMQAAMDETARRREKQQQYNEAHGITPQ 239

Query: 724 SVKEKIMEVIDPILLE-DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
           ++++KI +V++   +   A   +   + +++    K     +K L KQM   A NL FE 
Sbjct: 240 TIRKKITDVMEGAHVAIKAKKAHREREREEMPADPKAAAKLIKQLEKQMLEHAKNLEFEA 299

Query: 783 AARIRDEIKRLKSSPYFQG 801
           AA +RD IK ++ S Y   
Sbjct: 300 AAALRDRIKHIEQSAYIDN 318


>gi|237751910|ref|ZP_04582390.1| exinuclease abc subunit b [Helicobacter winghamensis ATCC BAA-430]
 gi|229376669|gb|EEO26760.1| exinuclease abc subunit b [Helicobacter winghamensis ATCC BAA-430]
          Length = 324

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 152/324 (46%), Positives = 222/324 (68%)

Query: 140 FFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVM 199
            F + + + PSGDQP AI  L   I    + Q L+GVTGSGKTF+MA +I+ +Q P ++M
Sbjct: 1   MFALHSQFKPSGDQPEAIKTLSSFIKKGSQYQTLIGVTGSGKTFSMAHIIQELQMPTLIM 60

Query: 200 APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
             NK LAAQLYSEF+ FFP N VEYF+S++DYYQPEAY+PR D +IEK+SSINE ++R+R
Sbjct: 61  THNKTLAAQLYSEFQGFFPKNHVEYFISHFDYYQPEAYIPRQDLFIEKDSSINEGLERLR 120

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            SAT SLL  +DC+VV+SVS  YG+G+ + Y +MI + ++     QK LL  LV   YKR
Sbjct: 121 LSATTSLLAYDDCVVVASVSANYGLGNPKEYLEMIEKFEVAQDYHQKSLLLRLVDMGYKR 180

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            D    RG FRV G+ I+IFP++ E+   R+  FG+++E I+    +  + ++ +E+  +
Sbjct: 181 NDNFFDRGDFRVNGEVIDIFPAYSEEEIVRLEFFGDELESITLLDSIEKKPLKKLESFVL 240

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           YA + ++     L  A+K I+EEL +RL   +++GR++E +RL+ R  +DLEM++ TG C
Sbjct: 241 YAANPFIVGADRLKQAVKSIEEELHLRLKFFKEQGRMVEYERLKSRTEFDLEMIQATGIC 300

Query: 440 QSIENYSRYLTGRNPGEPPPTLFE 463
           + IENY+R+LTG+ PGE P +L +
Sbjct: 301 KGIENYARHLTGKKPGETPYSLLD 324


>gi|3043868|gb|AAC14603.1| extracellular protein Exp5 precursor [Lactococcus lactis subsp.
           cremoris MG1363]
          Length = 455

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 167/285 (58%), Positives = 209/285 (73%), Gaps = 6/285 (2%)

Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT 479
           QRLEQR  YD+EML   G C  +ENYSR++ GR  GEPP TL ++ P+D ++ +DESH+T
Sbjct: 177 QRLEQRTNYDIEMLREMGYCNGVENYSRHMDGREEGEPPYTLLDFFPDDFMIMIDESHMT 236

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q+ GMY GD  RK  L  YGFRLPS +DNRPL+ EE+       + VSATPG +E+EQ
Sbjct: 237 MGQVKGMYNGDRARKEMLCNYGFRLPSALDNRPLKREEFESHVHQIVYVSATPGDYEMEQ 296

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
               IVEQIIRPTGL+DP VE+R    Q++D+  EI+  A++  R+ +T LTK+M+EDLT
Sbjct: 297 T-DTIVEQIIRPTGLLDPVVEVRPMMGQIDDLVGEIHKRAEKNERVFVTTLTKKMSEDLT 355

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
            Y  E  I+V+YMHS++KTLER EIIRDLRLG FDVLVGINLLREG+D+PE  LVAILDA
Sbjct: 356 AYFKEMGIKVKYMHSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDA 415

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           DKEGFLR++  LIQTIGRAARN    VILY+D     +  A+DE 
Sbjct: 416 DKEGFLRNERGLIQTIGRAARNSEGHVILYSD-----MAKALDEN 455


>gi|218515691|ref|ZP_03512531.1| excinuclease ABC subunit B [Rhizobium etli 8C-3]
          Length = 371

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 197/302 (65%), Positives = 237/302 (78%), Gaps = 6/302 (1%)

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           MDNRPLRFEEW+ +RP TI VSATPG+WE+EQ  G+  EQ+IRPTGL+DPPVE+RSARTQ
Sbjct: 1   MDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQSGGVFAEQVIRPTGLIDPPVEVRSARTQ 60

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           V+DV  EI   A +G R L TVLTKRMAEDLTEYL+E+ +RVRYMHS++ TLERIEIIRD
Sbjct: 61  VDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRD 120

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LRLG FDVLVGINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ KVI
Sbjct: 121 LRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVI 180

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           LYAD +T S+Q A+DET RRREKQ+ +N ++ I P+SVK KI +++D +   D    +IS
Sbjct: 181 LYADQVTGSMQRAMDETGRRREKQMAYNLENGITPESVKAKISDILDSVYERDHVRADIS 240

Query: 748 ID-----AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGL 802
                  A   +L     +AHL +L K M  AA +L+FE+AAR+RDEIKRLK++     +
Sbjct: 241 GVSGKGFADGGNLVGNNLQAHLNALEKSMRDAAADLDFEKAARLRDEIKRLKAAE-LAVM 299

Query: 803 DD 804
           DD
Sbjct: 300 DD 301


>gi|289811492|ref|ZP_06542121.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 308

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 163/306 (53%), Positives = 212/306 (69%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT++LLER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYT 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ    V    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           IY  +HYVTPR  +  AM+ IK+EL  R   L    +LLE QRL QR  +DLEM+   G 
Sbjct: 243 IYPKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNELGY 302

Query: 439 CQSIEN 444
           C  IEN
Sbjct: 303 CSGIEN 308


>gi|196018038|ref|XP_002118717.1| hypothetical protein TRIADDRAFT_62734 [Trichoplax adhaerens]
 gi|190578390|gb|EDV18796.1| hypothetical protein TRIADDRAFT_62734 [Trichoplax adhaerens]
          Length = 300

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 178/299 (59%), Positives = 239/299 (79%)

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           MA +IE  QRPA++MA NK LAAQLY+E KNFFP+NAVEYFVSYYDYYQPEAY+P++D+Y
Sbjct: 1   MANIIEKCQRPALIMAHNKTLAAQLYNEMKNFFPNNAVEYFVSYYDYYQPEAYIPQSDSY 60

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304
           IEK++ INEQID +RHSATR+LLER D IVV+SVSCIYG+G+ E Y QM  +L+ G +  
Sbjct: 61  IEKDAQINEQIDLLRHSATRALLERKDVIVVASVSCIYGLGAPELYLQMSFKLEKGKTYS 120

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           ++E++  L++ QY+R D+   RG FRV G++I++FPSH +D AWR+S + +++E+I EF 
Sbjct: 121 RREVMQKLIELQYQRMDLDFSRGGFRVRGENIDVFPSHYQDRAWRISFWDDEVEKIYEFD 180

Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
            LTG+K +N+  I I+ANSHYVTPRPTL  A+  I++EL  R+ + +    ++E+QR+ Q
Sbjct: 181 YLTGEKTKNLNEIIIFANSHYVTPRPTLEQAVNLIQDELSERVEKFKLGNMVVESQRIAQ 240

Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
           R  +D+EM+  T SC+ IENYSRYL+GR  GEPPPTLFEY+P+D+LLFVDESHVT+PQI
Sbjct: 241 RTNFDIEMIMETSSCKGIENYSRYLSGRKEGEPPPTLFEYLPKDALLFVDESHVTVPQI 299


>gi|255523395|ref|ZP_05390364.1| helicase domain protein [Clostridium carboxidivorans P7]
 gi|255512853|gb|EET89124.1| helicase domain protein [Clostridium carboxidivorans P7]
          Length = 313

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 161/303 (53%), Positives = 214/303 (70%), Gaps = 2/303 (0%)

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MY GD  RK +L EYGFRLPS  DNRPL F E+       + VSATP ++ELE     + 
Sbjct: 1   MYAGDRSRKESLVEYGFRLPSAFDNRPLTFNEFEGKLNQVLFVSATPANYELEHSTN-VA 59

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           EQIIRPTGL+DP +E++  + Q++D+Y  I    ++G RIL+T LTK+MAEDL++Y  E 
Sbjct: 60  EQIIRPTGLLDPEIEVKPIKGQIDDLYKNIVETIKRGYRILVTTLTKKMAEDLSDYFKEM 119

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +I+  Y+HS + T++R+EIIRDLR G+FDVL+GINLLREGLDIPE  LVAILDADKEGFL
Sbjct: 120 DIKANYLHSGIDTIQRMEIIRDLRKGEFDVLIGINLLREGLDIPEVALVAILDADKEGFL 179

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS+ SLIQTIGRAARN  SKVI+YAD IT S+  AI ET RRR+ Q+E+N+KHNI P+++
Sbjct: 180 RSERSLIQTIGRAARNSESKVIMYADRITDSMGKAISETNRRRKIQMEYNEKHNIVPKTI 239

Query: 726 KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
           K++I EVI+   + +      S++ + +  + +     +    K+M  AA  L FE AA 
Sbjct: 240 KKEIREVIEATKVLEENAQYDSLE-EAMEANNENIDLLISKYEKEMKQAAKELQFELAAD 298

Query: 786 IRD 788
           +RD
Sbjct: 299 LRD 301


>gi|239629187|ref|ZP_04672218.1| UvrABC system protein B [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239528546|gb|EEQ67547.1| UvrABC system protein B [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 320

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/317 (50%), Positives = 215/317 (67%), Gaps = 4/317 (1%)

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-Q 541
           + GMY GD  RK  L  YGFRLPS +DNRPL+  E+       + VSATPG +EL++  +
Sbjct: 1   MRGMYNGDRARKQMLVNYGFRLPSALDNRPLKINEFEQHVHRILYVSATPGPYELDRVPK 60

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
             I EQIIRPTGL+DP +E+R    Q++D+  EIN       R+ +T LTK+MAEDLT+Y
Sbjct: 61  DDIAEQIIRPTGLLDPKIEVRPVMGQIDDLVGEINKRVDAHERVFITTLTKKMAEDLTDY 120

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L +  I+VRY+HS++KTLER +IIRDLRLGKFDVL+GINLLREG+D+PE  L+AILDADK
Sbjct: 121 LKDMGIKVRYLHSDIKTLERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADK 180

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN 721
           EGFLR++ SLIQTIGRA+RN + KVI+YAD +T S++ AI+ET RRR  Q + N++H+I 
Sbjct: 181 EGFLRAERSLIQTIGRASRNEHGKVIMYADKVTDSMKAAINETQRRRTIQEKFNEEHHIT 240

Query: 722 PQSVKEKIMEVIDPILLEDAATTNIS---IDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           P+++ + I   I      D           +     +SK   K  + +L  QM  AA  L
Sbjct: 241 PKTIIKPIRAAISSYEQSDDDKAEAKKTFAEVDYEDMSKADKKELVANLHSQMQAAAKKL 300

Query: 779 NFEEAARIRDEIKRLKS 795
           +FE+AA +RD I  L++
Sbjct: 301 DFEQAASLRDTILELQA 317


>gi|12407621|gb|AAG53595.1|AF248315_1 UvrB-like protein [uncultured bacterium pCosAS1]
          Length = 309

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/300 (52%), Positives = 206/300 (68%)

Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303
           +I+K++S+NE I++MR SAT++LLER D +VV+SVS IYG+G  + Y +M++ L  G  +
Sbjct: 6   FIQKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMII 65

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           +Q+ +L  L + QY R D    RGTFRV G+ I+IFP+  +D A RV +F  ++E +S F
Sbjct: 66  DQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDIFPAESDDFALRVELFDEEVERLSLF 125

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
            PLTG     +    +Y  +HYVTPR  +  AM+ IK EL  R   L    +LLE QR+ 
Sbjct: 126 DPLTGHVESIIPRFTVYPKTHYVTPRERIVQAMEDIKVELADRRKTLLDNNKLLEEQRIS 185

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
           QR  +DLEM+   G C  IENYSRYL+GR PGE PPTLF+Y+P D LL VDESHVTIPQI
Sbjct: 186 QRTQFDLEMMNELGYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQI 245

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
            GMYRGD  RK TL EYGFRLPS +DNRP++FEE+  L P TI VSATPG++EL +    
Sbjct: 246 GGMYRGDRARKETLVEYGFRLPSALDNRPMKFEEFEALAPXTIYVSATPGNYELXKSGER 305


>gi|237751911|ref|ZP_04582391.1| exinuclease abc subunit b [Helicobacter winghamensis ATCC BAA-430]
 gi|229376670|gb|EEO26761.1| exinuclease abc subunit b [Helicobacter winghamensis ATCC BAA-430]
          Length = 325

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 175/326 (53%), Positives = 224/326 (68%), Gaps = 2/326 (0%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           +L VDESHV++PQ  GMY GD  RK  L EYGFRLPS +DNRPL++EE+    P  + VS
Sbjct: 1   MLIVDESHVSLPQFGGMYAGDRSRKEVLVEYGFRLPSALDNRPLKYEEFIIKAPHFLFVS 60

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
           ATP   EL+  Q    EQ+IRPTGL+DP  E+     QV  +YD       +G R+L+T 
Sbjct: 61  ATPAQKELDLSQEHTAEQLIRPTGLLDPLYEVLEVDKQVTILYDRAKEVIARGERVLVTA 120

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           LTK+MAE+LT+Y  +  +RVRYMHS++  +ER +IIR LR G+FD+LVGINLLREGLD+P
Sbjct: 121 LTKKMAEELTKYYNDLGLRVRYMHSDIDAIERNQIIRALRAGEFDILVGINLLREGLDLP 180

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           E  LVAILDADKEGFLRS+TSLIQT+GRAARNVN +V+L+A  IT S+Q A++ T  RR 
Sbjct: 181 EVSLVAILDADKEGFLRSETSLIQTMGRAARNVNGRVLLFASKITPSMQKAMEITDYRRA 240

Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRK 769
           KQ  +NK HNI PQSV  K+ E +    L        +  A +  + K + +  +K L K
Sbjct: 241 KQEAYNKAHNIIPQSVSRKLDEDLKNQDL--GMLYERAKKASKEKMPKSEREKLVKELSK 298

Query: 770 QMHLAADNLNFEEAARIRDEIKRLKS 795
           QM  AA  L FEEAAR+RDEI +L++
Sbjct: 299 QMQEAAKKLEFEEAARLRDEIAKLRA 324


>gi|240850158|ref|YP_002971551.1| excinuclease ABC subunit B [Bartonella grahamii as4aup]
 gi|240267281|gb|ACS50869.1| excinuclease ABC subunit B [Bartonella grahamii as4aup]
          Length = 376

 Score =  369 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 175/279 (62%), Positives = 220/279 (78%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           EW+ +RP TI VSATPG WE+EQ  G   EQIIRPTGL+DPP E+R A  QV+DV +EI 
Sbjct: 4   EWDAMRPQTIAVSATPGRWEIEQSHGTFAEQIIRPTGLIDPPTEVRPASNQVDDVVNEIR 63

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              Q+G R L+TVLTKRMAEDLTEYL+E++IRVRYMHS++ TLERIEI+RDLRLG FDVL
Sbjct: 64  KTIQKGYRTLVTVLTKRMAEDLTEYLHEQDIRVRYMHSDIDTLERIEILRDLRLGTFDVL 123

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +GINLLREGLDIPECG VAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYADTIT S
Sbjct: 124 IGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADTITGS 183

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
           I+ A+ ET RRR+KQ+ +N++H+I P+S+K+ I ++++     +   T      ++ ++ 
Sbjct: 184 IERALQETQRRRQKQIAYNEEHHITPKSIKKNIGDILNSGYENNHIRTITPDVIEKKNMV 243

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                +H+K L K MH AA +LNFEEAAR+RDEIK+L+ 
Sbjct: 244 GNNLASHIKHLEKLMHEAAADLNFEEAARLRDEIKQLQK 282


>gi|301307457|ref|ZP_07213449.1| putative excinuclease ABC subunit B [Escherichia coli MS 124-1]
 gi|300837372|gb|EFK65132.1| putative excinuclease ABC subunit B [Escherichia coli MS 124-1]
          Length = 300

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 157/298 (52%), Positives = 209/298 (70%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           IY  +HYVTPR  +  AM+ IKEEL  R   L +  +LLE QRL QR  +DLEM+   
Sbjct: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300


>gi|171850941|emb|CAQ00033.1| putative uvrABC system protein B [Rhodococcus erythropolis]
          Length = 345

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 160/339 (47%), Positives = 218/339 (64%), Gaps = 30/339 (8%)

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            T +   F LPS  DNRPL +EE++     T+ +SATPG +EL Q  G  VEQ+IRPTGL
Sbjct: 6   ETWSSSDFGLPSATDNRPLTWEEFSQRIGQTVYLSATPGKYELGQSGGEFVEQVIRPTGL 65

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +DP V ++  + Q++D+  EI   A++  R+L+T LTK+M+EDLT+YL E  IRVRY+HS
Sbjct: 66  IDPEVIVKPTKGQIDDLVHEIRERAERDERVLVTTLTKKMSEDLTDYLLELGIRVRYLHS 125

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++ TL R+E++R LRLG++DVLVGINLLREGLD+PE  LVAILDADKEGFLRS TSLIQT
Sbjct: 126 DIDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSTSLIQT 185

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
           IGRAARNV+ +V +YAD IT S+  AI+ET RRREKQ+ +N+K  ++PQ +++KI +++D
Sbjct: 186 IGRAARNVSGQVHMYADKITASMAQAIEETERRREKQVAYNEKMGVDPQPLRKKIADILD 245

Query: 735 PILLEDAATTN----------------------------ISIDAQQLSLSKKKGKAHLKS 766
            +  E   T                              +       S+ + +    +K 
Sbjct: 246 QVYEEAEDTAASVDVGGSGRNATRGRRAQGEAGRAVSAGVYEGRDTKSMPRAELADLVKE 305

Query: 767 LRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           L  QM  AA +L FE A R+RDEI  LK     +G+D +
Sbjct: 306 LTGQMMNAARDLQFELAGRLRDEISDLKKE--LRGMDAA 342


>gi|218515278|ref|ZP_03512118.1| excinuclease ABC subunit B [Rhizobium etli 8C-3]
          Length = 341

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 169/307 (55%), Positives = 211/307 (68%), Gaps = 26/307 (8%)

Query: 33  KQLEVDKTMVA-DAMRRIRSEAGKHRKNAAKRMLIHQR---------------------- 69
           KQLE D      ++ R I S+AGKHRK        H                        
Sbjct: 36  KQLEADAEASGVESQRDIASKAGKHRKAVENAARKHSEAVSVNKKATVGKTARGVSIGGS 95

Query: 70  --ENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHR 127
               T +       + + +S +   +IS   +T +V+AL++LI+S NPL KNGKIWTPHR
Sbjct: 96  SDPKTRAAAGLNPVAGLDISLEDAGKISPGGVTATVEALSKLIESGNPLHKNGKIWTPHR 155

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK 187
               +     I    M++DY P+GDQP AI  L++G+ + ++ Q+LLGVTGSGKTFTMAK
Sbjct: 156 PARPDKSEGGIRIL-MKSDYEPAGDQPTAIRDLVEGLENGDRSQVLLGVTGSGKTFTMAK 214

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           VIEA QRPA+++APNK LAAQLYSEFKNFFP NAVEYFVSYYDYYQPEAYVPR+DTYIEK
Sbjct: 215 VIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEK 274

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           ESSINEQIDRMRHSATRSLLER+DCI+V+SVSCIYGIGSVE+Y+ M  Q+ +GD ++Q++
Sbjct: 275 ESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQ 334

Query: 308 LLSSLVK 314
           LL+ LV 
Sbjct: 335 LLADLVA 341


>gi|146318679|ref|YP_001198391.1| helicase subunit of the DNA excision repair complex [Streptococcus
           suis 05ZYH33]
 gi|145689485|gb|ABP89991.1| Helicase subunit of the DNA excision repair complex [Streptococcus
           suis 05ZYH33]
          Length = 271

 Score =  350 bits (897), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 139/260 (53%), Positives = 192/260 (73%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI  L+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYAPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + YS  +V L+ G  + + +LL++LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGQEISRDQLLNALVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E   LTG+ + +V+ + I+
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVLGDVDHLAIF 249

Query: 381 ANSHYVTPRPTLNTAMKYIK 400
             +H+VT    + T +  I+
Sbjct: 250 PATHFVTNDDHMETVIAKIR 269


>gi|145641148|ref|ZP_01796729.1| excinuclease ABC subunit B [Haemophilus influenzae R3021]
 gi|145274309|gb|EDK14174.1| excinuclease ABC subunit B [Haemophilus influenzae 22.4-21]
          Length = 276

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 143/265 (53%), Positives = 191/265 (72%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA
Sbjct: 6   NTKPFILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPA 65

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI+
Sbjct: 66  MLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIE 125

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           +MR SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + Q
Sbjct: 126 QMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQ 185

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y R D    RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V  
Sbjct: 186 YTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPR 245

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKE 401
             IY  +HYVTPR  +  A++ IK+
Sbjct: 246 FTIYPKTHYVTPRERILDAIENIKK 270


>gi|145629308|ref|ZP_01785107.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21]
 gi|144978811|gb|EDJ88534.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21]
          Length = 275

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 149/269 (55%), Positives = 195/269 (72%)

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+QI++MR SA
Sbjct: 5   KTLAAQLYAEMKGFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRLSA 64

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           T+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ L + QY R D 
Sbjct: 65  TKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTRNDQ 124

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
              RGTFRV G+ I+IFP+  +D A R+ +F ++IE +S F PLTG     V    IY  
Sbjct: 125 AFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTIYPK 184

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           +HYVTPR  +  A++ IK+EL  R     KE +LLE QR+ QR  +D+EM+   G C  I
Sbjct: 185 THYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCSGI 244

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
           ENYSRYL+GRN GEPPPTLF+Y+P D++ 
Sbjct: 245 ENYSRYLSGRNEGEPPPTLFDYMPSDAIF 273


>gi|315928533|gb|EFV07834.1| UvrABC system protein B [Campylobacter jejuni subsp. jejuni 305]
          Length = 285

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 132/283 (46%), Positives = 183/283 (64%)

Query: 142 QMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           ++ +++ PS DQ  AI  ++K I    K Q LLGVTGSGKTFTMA VI+ +  P ++M+ 
Sbjct: 3   ELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSH 62

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           NK L AQLYSEFK FF  N VEYF+SYYDYYQPEAY+PRTD +IEK+SS NE ++R+R S
Sbjct: 63  NKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLS 122

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
           AT SLL   D + ++SVS  YG+G+   Y  M++  ++G  + QKELL  LV   YKR D
Sbjct: 123 ATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELGMQISQKELLKKLVDMGYKRND 182

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               R  FRV GD I+I+P++ ED   R+  FG++++ +  +  L  +K ++++   +Y 
Sbjct: 183 NFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFILYP 242

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
            S +      L  A+K IK EL  RL   E E +L+E QRL+Q
Sbjct: 243 TSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQ 285


>gi|255023705|ref|ZP_05295691.1| excinuclease ABC subunit B [Listeria monocytogenes FSL J1-208]
          Length = 236

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 130/232 (56%), Positives = 171/232 (73%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI QL+ G+    K Q LLG TG+GKTFT++ VI+ + +P +VMA
Sbjct: 5   FELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTGKTFTVSNVIQEVNKPTLVMA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP++DTYIEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS   Y +M+V L++G  + + +LL  LV  QY R 
Sbjct: 125 SATAALFERRDVIIIASVSCIYGLGSPIEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           DI   RG FRV GD +EIFP+  ++   R+  FG++IE I E   LTG+ I 
Sbjct: 185 DIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIG 236


>gi|153871608|ref|ZP_02000736.1| excinuclease ABC subunit B [Beggiatoa sp. PS]
 gi|152071925|gb|EDN69263.1| excinuclease ABC subunit B [Beggiatoa sp. PS]
          Length = 298

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 142/259 (54%), Positives = 189/259 (72%), Gaps = 3/259 (1%)

Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180
           ++        I N SK    FQ+Q  + P GDQP AI QLLKG+   ++ Q+LLGVTGSG
Sbjct: 26  RLPITDSPLPIKNMSK---PFQLQAKFKPKGDQPQAIKQLLKGLKRGDQHQILLGVTGSG 82

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           KTFT+A VI+ +QRP +++APNK LAAQLYSE + FFP+NAVEYFVSYYDYYQPEAY+P 
Sbjct: 83  KTFTIANVIQVVQRPTLILAPNKTLAAQLYSEMRGFFPNNAVEYFVSYYDYYQPEAYMPA 142

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           +DTYIEK++SINEQID+MR SAT+++LER+D IVV+SVS IYG+G    Y QM++ L  G
Sbjct: 143 SDTYIEKDASINEQIDQMRLSATKAMLERSDAIVVASVSAIYGLGDPNWYLQMVLHLVRG 202

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           + +EQ+ +L  L + QY+R    + RGT+RV G+ I+I+P+  E  A RV +F ++IE +
Sbjct: 203 EEIEQRFILRRLTELQYRRNQTVLERGTYRVHGEVIDIYPAESERDAIRVELFDDEIESL 262

Query: 361 SEFYPLTGQKIRNVETIKI 379
           S F PLTGQ +R V  + I
Sbjct: 263 SYFDPLTGQVLRRVPRVTI 281


>gi|291533170|emb|CBL06283.1| Helicase subunit of the DNA excision repair complex [Megamonas
           hypermegale ART12/1]
          Length = 242

 Score =  327 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 153/243 (62%), Positives = 191/243 (78%), Gaps = 1/243 (0%)

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MY GD  RK +L + GFRLPS  DNRPLRFEE+       I VSATP  +EL Q    +V
Sbjct: 1   MYAGDRSRKESLVDNGFRLPSAFDNRPLRFEEFLDHINQIIYVSATPAPFELAQANQ-VV 59

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           EQIIRPTGL+DP +EIR    Q++D+  EI +  ++  R+L+T LTK+MAE+LT+YL E 
Sbjct: 60  EQIIRPTGLLDPEIEIRPLEGQMDDLLGEIKIRTKKNERVLITTLTKKMAENLTDYLKEM 119

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            I+VRY+HS++ T+ER EIIRDLRLGKFDVLVGINLLREGLD+PE  LVAILDADKEGFL
Sbjct: 120 GIKVRYLHSDIATIERAEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 179

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS+TSLIQTIGRAARN + KVI+YAD IT S+Q AIDET RRRE Q ++N++H+I P+++
Sbjct: 180 RSETSLIQTIGRAARNAHGKVIMYADRITDSMQKAIDETLRRREVQDKYNQEHHITPKTI 239

Query: 726 KEK 728
           ++K
Sbjct: 240 QKK 242


>gi|256027141|ref|ZP_05440975.1| excinuclease ABC subunit B [Fusobacterium sp. D11]
          Length = 293

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 140/287 (48%), Positives = 210/287 (73%), Gaps = 2/287 (0%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F++ ++Y P+GDQP AI  ++K I +  K Q+LLGVTGSGKTFT+A VIE +QRP+
Sbjct: 2   ENNLFKIHSEYRPTGDQPTAIDSIVKNIENGVKDQVLLGVTGSGKTFTIANVIERVQRPS 61

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++APNK LAAQLYSE+K FFP NAVEYFVSYYDYYQPEAY+  TDTYIEK+SS+N++ID
Sbjct: 62  LIIAPNKTLAAQLYSEYKKFFPENAVEYFVSYYDYYQPEAYIKTTDTYIEKDSSVNDEID 121

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           ++R++AT +L+ R D I+V+SVS IYG+GS ++Y +M + +     + +KEL+  LV  +
Sbjct: 122 KLRNAATAALIHRRDVIIVASVSSIYGLGSPDTYRKMTIPIDKQTGISRKELIKRLVDLR 181

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VE 375
           Y R D+   RG FR+ GD I+I+PS++ +  +R+  +G+D+EEISE   LTGQK++  +E
Sbjct: 182 YNRNDVAFERGQFRIKGDVIDIYPSYMSN-GYRLEYWGDDLEEISEINTLTGQKVKKNLE 240

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
            I IY  + Y+T     +  +K IK++LK+ + + E E +++ + ++
Sbjct: 241 RIVIYPATQYLTADDDKDRIIKEIKDDLKVEVKKFEDEKKIIGSTKI 287


>gi|309800514|ref|ZP_07694666.1| UvrABC system protein B [Streptococcus infantis SK1302]
 gi|308115862|gb|EFO53386.1| UvrABC system protein B [Streptococcus infantis SK1302]
          Length = 257

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 128/223 (57%), Positives = 170/223 (76%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y PSGDQP AI QL+  I   EK Q+L+G TG+GKT+TM++VI  + +P +V+A
Sbjct: 10  FKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIA 69

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++ID++RH
Sbjct: 70  HNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 129

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +LLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL+ LV  Q++R 
Sbjct: 130 SATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLNDLVDIQFERN 189

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           DI   RG FRV GD +EIFP+  ++ A+RV  FG++I+ I E 
Sbjct: 190 DIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREV 232


>gi|323971943|gb|EGB67164.1| excinuclease ABC [Escherichia coli TA007]
          Length = 292

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 128/245 (52%), Positives = 174/245 (71%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R SAT+++LER D +VV+SVS IYG+G  + Y +M++ L +G  ++Q+ +L  L + QY 
Sbjct: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R D    RGTFRV G+ I+IFP+  +D+A RV +F  ++E +S F PLTGQ +  +    
Sbjct: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFY 242

Query: 379 IYANS 383
               +
Sbjct: 243 HLPEN 247


>gi|218262778|ref|ZP_03477136.1| hypothetical protein PRABACTJOHN_02815 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223149|gb|EEC95799.1| hypothetical protein PRABACTJOHN_02815 [Parabacteroides johnsonii
           DSM 18315]
          Length = 280

 Score =  317 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 140/272 (51%), Positives = 189/272 (69%), Gaps = 8/272 (2%)

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
           TP  +ELE+ +GI+V+Q+IRPTGL+DP +E+R    Q++D+ +EI   +    R+L+T L
Sbjct: 1   TPADYELEKSEGIVVDQVIRPTGLLDPVIEVRPTLNQIDDLMEEITQRSAVDERVLVTTL 60

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TKRMAE+LT YL    +R  Y+HS+V TLERI+I+ DLR G FDVL+G+NLLREGLD+PE
Sbjct: 61  TKRMAEELTTYLTRMGVRCNYIHSDVDTLERIQIMDDLRKGLFDVLIGVNLLREGLDLPE 120

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
             LVAILDADKEGFLRS  SL QT GRAARNVN KVI YAD IT S++L +DET RRREK
Sbjct: 121 VSLVAILDADKEGFLRSHRSLTQTAGRAARNVNGKVIFYADKITDSMRLTMDETARRREK 180

Query: 711 QLEHNKKHNINPQSVKEK----IMEVIDPILLEDAA----TTNISIDAQQLSLSKKKGKA 762
           QL +N+KH I P+ V +     + E   P+  E  A      ++  D     +++K+ + 
Sbjct: 181 QLAYNEKHGITPKQVIKNSVSLVAEKQQPVTGEPYAYVEPEPSLVADPVVQYMNRKQLEK 240

Query: 763 HLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
            ++  +KQM  AA  L+F EAA+ RDE+ +L+
Sbjct: 241 AIERTKKQMMEAAKKLDFIEAAQFRDELVKLE 272


>gi|148645254|gb|ABR01151.1| UvrB [uncultured Geobacter sp.]
          Length = 236

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 122/236 (51%), Positives = 163/236 (69%)

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           TDT+IEK+SS+N++ID+MRHSATRSLL R D I+V+SVSCIYGIGS E+Y+ + +    G
Sbjct: 1   TDTFIEKDSSVNDEIDKMRHSATRSLLTRRDVIIVASVSCIYGIGSPEAYASLHIFFHQG 60

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           +   +  LL  LV+ QY+R D+   RGTFRV GD +E+FP++  D A R+  FG++IE I
Sbjct: 61  EDFGRDTLLKKLVEIQYERNDMDFHRGTFRVRGDVVEVFPAYDSDKALRIEFFGDEIEAI 120

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
           SE  PL G  ++ +    IY  SHYV+ R TL+ A+  I+ +L+ R+     +  L EAQ
Sbjct: 121 SEIDPLRGVVLQRLPKCAIYPASHYVSTRETLDRAVAQIRLDLEERIRYFRSQNMLWEAQ 180

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           R+EQR  +D+EM+E  G CQ IENYSRY   R P EPP TL +Y PED +LFVDES
Sbjct: 181 RIEQRTYFDIEMMEGMGFCQGIENYSRYFDNRQPNEPPYTLIDYFPEDFVLFVDES 236


>gi|147676451|ref|YP_001210666.1| helicase subunit of the DNA excision repair complex [Pelotomaculum
           thermopropionicum SI]
 gi|146272548|dbj|BAF58297.1| helicase subunit of the DNA excision repair complex [Pelotomaculum
           thermopropionicum SI]
          Length = 541

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 211/534 (39%), Gaps = 45/534 (8%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIE-AMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           L++G+ +  + Q + G++GS  ++  A +   A   P +V+ P +  A Q+  E     P
Sbjct: 17  LIRGLENNFRQQAVFGLSGSQTSYLYAGLAGVAAPLPVLVVTPGEREACQMADEIAGLLP 76

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
             AV+ F             P       +  + +++++  R     SL+     +V++  
Sbjct: 77  GAAVKLF-------------PVWQLLPFQIIAHSKEVEAQRLQVLESLVRGERAVVIAPA 123

Query: 279 SC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
              +  +   + + +  ++L  G+   + +L+  L+   Y+R  +   RG F + G  ++
Sbjct: 124 EAVLRRLVPPQIFGRAALRLATGERAGRDDLIRRLLAMGYERVGLVEGRGQFCLRGGILD 183

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           +FP        R+  F ++++ I  F   T +    ++ ++I A    +          +
Sbjct: 184 VFPM-TAHRPVRIEFFDDEVDSIRRFNAATQRSEEKIDEVEIGAARELIVEDKAWENFRR 242

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            +K+E + + ++LEK G    A++L ++     E     G    IEN+  Y         
Sbjct: 243 ALKKEYRAQALKLEKAGETGAARQLAEKFAETAEG--ACGYFNGIENFLPYFYR-----E 295

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
             T+ +Y+P  + + VD+       I  + R      + L   G  LPS      L +  
Sbjct: 296 VITILDYLPAGAPVIVDDPVRVKEMIDSIQRERMETYSDLLSRGRVLPSQF----LAYAG 351

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA-RTQVEDVYDEIN 576
           W+ ++     +S  P  +             +RP      P +   +    ++ + +EI 
Sbjct: 352 WSDIQGG---LSRHPVIYS---SLLPRQPDFVRPQQTFSLPWKAMPSFLGNLKMLAEEIR 405

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              + G   ++ V +   A+ +   L +  +   Y  S             +R G  +VL
Sbjct: 406 HWRKSGYATVILVSSHHRAQQILSSLKDHGVDAFYASS---------PEGHVRSG--NVL 454

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           V +  L  G ++P+C L  + + D  G  R      + +GR A  V+ +V  Y 
Sbjct: 455 VAVGSLSGGFELPDCRLAVVTERDIYGQFRRVKRERKRVGRMAPFVDLRVGDYV 508


>gi|148645250|gb|ABR01149.1| UvrB [uncultured Geobacter sp.]
          Length = 236

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 123/236 (52%), Positives = 161/236 (68%)

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           TDT+IEK+SSIN++ID+MRHSATRSLL R D I+V+SVSCIYGIGS E+Y  + +    G
Sbjct: 1   TDTFIEKDSSINDEIDKMRHSATRSLLTRRDVIIVASVSCIYGIGSPEAYQALHIFFHQG 60

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           +   +  LL  LV+ QY+R D    RGTFRV GD +E+FP++  D A RV  FG+++E I
Sbjct: 61  EEFGRDTLLKKLVEIQYERNDTDFHRGTFRVRGDVVEVFPAYDNDKALRVEFFGDEVEAI 120

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
           SE  PL G  ++ +    IY  SHYV+ R TL  A++ I+ +L  R+    +   LLEAQ
Sbjct: 121 SEIDPLRGAVLQRLTKCAIYPASHYVSTRETLEKAVELIRVDLGERIRYFRERNMLLEAQ 180

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           R+EQR  +D+EM+E  G CQ IENYSRY  GR  GEP  TL +Y P+D +LFVDES
Sbjct: 181 RIEQRTFFDIEMMEEMGFCQGIENYSRYFDGRQAGEPGYTLIDYFPDDFVLFVDES 236


>gi|110003545|emb|CAJ87487.1| excinuclease ABC subunit B [Candidatus Phytoplasma vitis]
          Length = 289

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 133/285 (46%), Positives = 188/285 (65%), Gaps = 10/285 (3%)

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           DNRPL F E+       I +SATPG++E+++ +  I+EQIIRPT ++DP +E+R  + Q+
Sbjct: 3   DNRPLTFSEFEKKMDKVIYLSATPGNYEIDK-KIPIIEQIIRPTFILDPIIELRPTQNQI 61

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           ED+Y EI   A++  R L+T +T  M+E+LT YL +  I+V Y+HSE+K+LER+ I++ L
Sbjct: 62  EDLYLEIKSRAEKNERTLVTTITINMSEELTNYLKKIGIKVAYLHSEIKSLERMIILKKL 121

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G +D LVG+NLLREGLD+PE  LVAILDADK GFLRS+ SLIQTIGRAARN+  KVI+
Sbjct: 122 RTGVYDCLVGVNLLREGLDLPEVSLVAILDADKPGFLRSEKSLIQTIGRAARNICGKVIM 181

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           Y D IT +++ AI ET RRR+ Q  +N KHN+ P  + + I +  D    ++        
Sbjct: 182 YGDEITNAMETAIQETLRRRQIQENYNLKHNLKPTIIHKNIKQTTDINKDKNE------- 234

Query: 749 DAQQLSLSKKKGKA--HLKSLRKQMHLAADNLNFEEAARIRDEIK 791
           D +    S+K+      LK L+  M  A+  L+FE+A   R+ I 
Sbjct: 235 DIESFLFSEKQSPKNYSLKKLQSLMKKASKKLDFEKAMFYRNLII 279


>gi|148645252|gb|ABR01150.1| UvrB [uncultured Geobacter sp.]
          Length = 236

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 121/236 (51%), Positives = 160/236 (67%)

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
           TDT+IEK+SSIN++ID+MRHSATRSLL R D I+V+SVSCIYGIGS E+Y  + +  + G
Sbjct: 1   TDTFIEKDSSINDEIDKMRHSATRSLLTRRDVIIVASVSCIYGIGSPEAYQALHIFFRQG 60

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           +   +  LL  LV+ QY+R D    RG FRV GD +E+FP++  D A R+  FG+ +E +
Sbjct: 61  EEYGRDTLLKKLVEIQYERNDTDFHRGAFRVRGDVVEVFPAYDNDKALRIEFFGDQVEAV 120

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
           SE  PL G  ++ +    IY  SHYV+ R TL  A++ I+  L  R+    +   LLEAQ
Sbjct: 121 SEIDPLRGTVLQRLAKCAIYPASHYVSTRETLEKAVEQIRVNLGERIRWFRERNMLLEAQ 180

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           R+EQR  +D+EM+E TG CQ IENYSRY  GR  GEP  TL +Y P+D +LFVDES
Sbjct: 181 RIEQRTFFDIEMMEETGFCQGIENYSRYFDGRQAGEPGYTLIDYFPDDFVLFVDES 236


>gi|221090580|ref|XP_002154320.1| PREDICTED: hypothetical protein, partial [Hydra magnipapillata]
          Length = 228

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 137/228 (60%), Positives = 178/228 (78%)

Query: 123 WTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT 182
            T       + ++     F +++ + PSGDQP AI ++++G    EK Q+LLGVTGSGKT
Sbjct: 1   MTAIFPLLYDKYNSPSKEFALESPFKPSGDQPQAIEEIVRGFQRGEKDQVLLGVTGSGKT 60

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242
           FTMA VI+ +QRP+++MAPNKILAAQLYSE K FFP+N VEYFVSYYDYYQPEAYV R+D
Sbjct: 61  FTMANVIQKLQRPSLIMAPNKILAAQLYSEMKEFFPNNCVEYFVSYYDYYQPEAYVARSD 120

Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302
           T+IEK +SINEQIDRMRHSATRS+LER+D IVV+SVSCIYGIG V +YS+M + LK+G S
Sbjct: 121 TFIEKTASINEQIDRMRHSATRSMLERHDVIVVASVSCIYGIGGVNTYSEMTIALKVGQS 180

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           ++++ L+  L++ QYKR DI   RG+FR  GD ++IFPSH E+ +WR+
Sbjct: 181 IDKQLLMKKLIEIQYKRNDIDFSRGSFRSRGDVLDIFPSHFENRSWRL 228


>gi|300857300|ref|YP_003782284.1| putative transcription-repair coupling factor [Clostridium
           ljungdahlii DSM 13528]
 gi|300437415|gb|ADK17182.1| predicted transcription-repair coupling factor [Clostridium
           ljungdahlii DSM 13528]
          Length = 1173

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 92/516 (17%), Positives = 218/516 (42%), Gaps = 44/516 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              ++ GI  ++    + G++ S K++ +  V   + +P +++  + + A +LY +   +
Sbjct: 16  FRNIIDGISKKKFPIGVFGLSESAKSYLIYGVYNEIDKPFLIVTHSDVEARKLYEDLSLY 75

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V YF             P  +       +I+  +   R    R +++    I+++
Sbjct: 76  LAE--VYYF-------------PTKEMVFYNIDAISGDLRWERLKVIRKMIDTGRKIIIT 120

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V  +      V  Y   I+ + +G+++  K++   LV+  Y++ +I   +G F + GD 
Sbjct: 121 CVESLASAYIPVGLYENYIINISVGEALNLKDISEKLVQSGYEKNEIVDSKGQFSIRGDI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++++     + A+R+ +FG+++E I      + + I  +++I+I+     +  +  +   
Sbjct: 181 MDVYSPIAAE-AYRIELFGDEVESIRTLNLESQRSIDKLDSIEIFPAKEIILDKDKIQKG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
            K I+++  +   +LEK        R+++    +LE LE   S ++I+++  Y       
Sbjct: 240 RKSIEDDAALVEKKLEKSKNKEALDRIDELTKKNLESLEENWSFENIDSFLPYFY----- 294

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           + P +  +Y  +D  + +D+      ++  +Y         L E G  LP        + 
Sbjct: 295 DKPASFLDY-AKDYFVVMDDVQRCSGKLDSVYFEFEENYKNLLERGNILPKQSKMLCAKS 353

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           + +  L+   I+         + +   +I  + I         + + S + Q++ + ++I
Sbjct: 354 DLFEELKNKEIMT-----LDAIAKSSKVIQPKTI----TNFSQITLNSYQGQIDLLIEDI 404

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                +G +IL+   T+   E L + L E+ I   Y           ++I +++ G+  +
Sbjct: 405 KDKKSRGYKILILSGTRPRGERLVDTLREKGIESSY----------RDVIHEIKSGEVVI 454

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
             G  L  +G + P+  L  I D +  G  + K + 
Sbjct: 455 TFGSQL--KGFEYPDFKLGVISDKEVFGEAKKKNTR 488



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L        +  +I        P++        + + D I     +G 
Sbjct: 778 VLTLSATPIPRTLHMSLVGARDISVIETPPEERYPIQTYVVEYNDQLIRDAILREINRGG 837

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++  Y+ +     +V   H +++  E   II D    +++VLV   +
Sbjct: 838 QVYFVYNRVESIKEMASYIAKLIPEAKVAVAHGQMQERELENIIVDFMKNEYNVLVATTI 897

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ--- 698
           +  G+DI     + I DADK G L     L   +GR  R     +    D +   +    
Sbjct: 898 IETGMDIQNVNTMIIYDADKMG-LSQLYQLRGRVGRTNRMAYCYLSYRRDKVLTEVAEKR 956

Query: 699 -LAIDE 703
             AI E
Sbjct: 957 LKAIKE 962


>gi|303288766|ref|XP_003063671.1| exinuclease ABC subunits B and C-containing protein [Micromonas
           pusilla CCMP1545]
 gi|226454739|gb|EEH52044.1| exinuclease ABC subunits B and C-containing protein [Micromonas
           pusilla CCMP1545]
          Length = 1800

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 158/481 (32%), Positives = 232/481 (48%), Gaps = 88/481 (18%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFTMAKVIEAMQRP--AIVMAP 201
             + P+GDQPAAIA   + +H  R +   L G TG+GKTF +A VI +  +P   +V+ P
Sbjct: 116 APFAPAGDQPAAIADCARLVHDERRRFTCLRGATGTGKTFVVANVIASQPKPIPTLVVVP 175

Query: 202 NKILAAQLYSEFKNFFPH-NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           NK LAAQ+  E + +      VE FVS++  Y PE+Y      Y+EK S++++ ++ +RH
Sbjct: 176 NKTLAAQVARELRAYLRDSRHVELFVSHFSLYVPESY--SRGRYVEKRSAVDKDLEALRH 233

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG----DSVEQKELLSSLVK-Q 315
            AT++LLE +D +VV+SVSC+YG+G    Y    +  + G        Q  +   L +  
Sbjct: 234 RATKALLESDDVVVVASVSCLYGMGMPSDYVDARLCFERGVPGLGVAGQDAVARRLTESL 293

Query: 316 QYK-----RQDIGIIRGTFRVCGDS---------IEIFPSHLE-----DVAWRVSMFG-- 354
            Y+     R D G+ RG +   G++         I ++P + E     DVA   S+ G  
Sbjct: 294 LYEETKDARWD-GVSRGQWAWQGEADADVDGARRIAVWPPYEEAPVEMDVAPDGSLVGFG 352

Query: 355 ------NDIEEISEFYPL----------------TGQKIRNV--------------ETIK 378
                 +      E                     G +  +               + + 
Sbjct: 353 RMRSAYDADASYVEADVEADVAVAGKKKKKKTATRGTRRGDFVSAAADGEPLPPPPDRVT 412

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           I+   H++TP   L  A + IK E++ R  EL   G  +EA RLEQR   D+ +L   G 
Sbjct: 413 IWPRQHHITPPERLAVAAEAIKAEMRARSAELRANGLQIEADRLEQRTKADVGLLRELGW 472

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYI------------------PE-DSLLFVDESHVT 479
           C   E+YSR+L GR+ G PP TL +Y                   P+ D LL  DESHV 
Sbjct: 473 CPGAEHYSRHLGGRDEGAPPVTLLDYFNFSTTAEAGGAFGGGDSKPKRDWLLVADESHVM 532

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           +PQ+  M+ GD  RK  L   G+RLPS +DNRPL F+E+    P  ++VSATPG+ E   
Sbjct: 533 LPQLKAMHGGDRSRKLGLVAGGYRLPSALDNRPLTFDEFWERVPRALLVSATPGAIEEAW 592

Query: 540 C 540
           C
Sbjct: 593 C 593



 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 78/182 (42%), Positives = 111/182 (60%), Gaps = 2/182 (1%)

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL- 602
           +V+ ++RP+G++DPPV +     Q+ ++   +   A +G   L+  LTK   EDL  YL 
Sbjct: 656 MVDMVVRPSGVLDPPVTVLPRAKQLPEIARLVRERAARGEASLVCALTKADCEDLAGYLN 715

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
                R  ++HSE+   +R + ++ L+ G+ DVLVG  LLREGLD+P+  LVA+LDA   
Sbjct: 716 CLGGARADWLHSELTAPQRAKKLQRLQQGEIDVLVGAQLLREGLDLPQVSLVAVLDAGVP 775

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTI-TKSIQLAIDETTRRREKQLEHNKKHNIN 721
           GF+RS  SLIQ  GRAARN   +   +AD   T+++  AIDE  RRR KQ  HN KH I 
Sbjct: 776 GFMRSSRSLIQMHGRAARNARGECYFFADEPYTEAMTEAIDEIDRRRAKQSAHNAKHGIT 835

Query: 722 PQ 723
           P+
Sbjct: 836 PK 837


>gi|328465632|gb|EGF36854.1| excinuclease ABC subunit B [Lactobacillus rhamnosus MTCC 5462]
          Length = 219

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 121/218 (55%), Positives = 156/218 (71%), Gaps = 1/218 (0%)

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
           QR  YD+EM+   G    IENYSR++ GR PGEPP TL ++ P+D  + VDESHVT+PQ+
Sbjct: 2   QRTNYDIEMMREMGFTSGIENYSRHMDGRKPGEPPYTLLDFFPKDFTIMVDESHVTMPQV 61

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QG 542
            GMY GD  RK  L  YGFRLPS +DNRPL+ +E+       + VSATPG +EL +  + 
Sbjct: 62  KGMYNGDRARKQMLINYGFRLPSALDNRPLKIDEFEKHVKRILYVSATPGPYELSRVPKE 121

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
            I EQIIRPTGL+DP +E+R    Q++D+  EIN       R+ +T LTK+MAEDLT+YL
Sbjct: 122 DIAEQIIRPTGLLDPKIEVRPVMGQIDDLVGEINKRIDAHERVFITTLTKKMAEDLTDYL 181

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            +  I+VRY+HS++KTLER +IIRDLRLGKFDVL+GIN
Sbjct: 182 KDMGIKVRYLHSDIKTLERTQIIRDLRLGKFDVLIGIN 219


>gi|241563357|ref|XP_002401670.1| hypothetical protein IscW_ISCW020751 [Ixodes scapularis]
 gi|215501862|gb|EEC11356.1| hypothetical protein IscW_ISCW020751 [Ixodes scapularis]
          Length = 227

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 135/227 (59%), Positives = 170/227 (74%)

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            ++ NSH+V P+ T+N+A+  I+EEL+ RL  L+ + + LE QRL QR  YDLEML  TG
Sbjct: 1   MVFGNSHFVMPQETVNSAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETG 60

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           SC+ +ENYSR+ TGRN G+PPPTLFEY+PED+LLFVDESHV++PQI  MY GD  RK  L
Sbjct: 61  SCKGVENYSRFFTGRNAGKPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKEVL 120

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            E+GFRLPS +DNRPL+FEEW   RP T+ VSATPG +ELE+  G +VE IIRPTGL+DP
Sbjct: 121 VEHGFRLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFELEETDGTVVELIIRPTGLLDP 180

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
              I+ A  QVED+  EI     +G R+L+T LTK+MAEDLT YL +
Sbjct: 181 ECIIKPATNQVEDLISEIQTTISKGFRVLVTTLTKKMAEDLTAYLQD 227


>gi|1545864|gb|AAC45869.1| UvrB [Pseudomonas aeruginosa PAO1]
          Length = 238

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 121/207 (58%), Positives = 158/207 (76%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  FQ+ + + P+GDQP AI Q+++G+ +    Q LLGVTGSGKTF++A VI  +QRP +
Sbjct: 30  MDTFQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTL 89

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFPHN+VEYFVSYYDYYQPEAYVP +DTYIEK+SSIN+ I++
Sbjct: 90  VLAPNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQ 149

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VS IYG+G   SY +M++ L  GD ++Q+ELL  L   QY
Sbjct: 150 MRLSATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQY 209

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLE 344
            R D+   R TFRV GD I+IFP+  +
Sbjct: 210 TRNDMDFARATFRVRGDVIDIFPAESD 236


>gi|15896463|ref|NP_349812.1| transcription-repair coupling factor [Clostridium acetobutylicum
           ATCC 824]
 gi|15026288|gb|AAK81152.1|AE007817_6 Transcription-repair coupling factor, MFD (superfamily II helicase
           ) [Clostridium acetobutylicum ATCC 824]
 gi|325510621|gb|ADZ22257.1| Transcription-repair coupling factor, MFD (superfamily II helicase
           ) [Clostridium acetobutylicum EA 2018]
          Length = 1171

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 114/507 (22%), Positives = 214/507 (42%), Gaps = 58/507 (11%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           I S E    L G++ SGK++ ++ + E +  P +V+  +   A ++Y +   +       
Sbjct: 23  IKSNEFPMELSGISESGKSYLISGLYEELDNPFLVITDSDSEAKKIYEDLLFY------- 75

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
                    Q   Y+P  +       +++  +   R    R ++ R   I+V+SV  +  
Sbjct: 76  --------TQSVYYLPTKEVVFYNIYAVSGDLRWERLKVIRKMMSRGKKIIVTSVENLAA 127

Query: 284 I-GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           +   VE Y +   +L +GD+VE KEL   LV+  Y+  +    +G F + G  ++I+ S 
Sbjct: 128 VYLPVELYKEYTFKLTLGDTVEAKELQKKLVQCGYEHVESVDAKGQFSIRGGIVDIY-SP 186

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
           ++DV +R+  FG++IE I  F   + + I  V  I+++     +     LN   + IK+E
Sbjct: 187 IDDVPYRIEFFGDEIESIRSFNTESQRSIEKVNKIEVFPAKEIILTDEALNKGYEAIKDE 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
           L   L  L+         +L++ + Y+LE L+     ++I+ +  Y       +   + F
Sbjct: 247 LNQSLDRLKGNNE-ESYNKLKETMEYNLEALKERAGFETIDTFIPYFY-----DNTSSFF 300

Query: 463 EYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLR 522
           +Y+ ++S++FVD       +I  +Y           E G  LP   +             
Sbjct: 301 DYL-KNSIIFVDNYERCKGKIDSVYCEFEQNYENFLERGDILPKQGN------------- 346

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRP------TGLVDPPVEIRSARTQVEDVYDEIN 576
              I+VS       L+  + I +E I R       TG+    + + S + Q++ + ++I 
Sbjct: 347 ---IIVSKENIYEILKTEKRINLESIGRAANNNFRTGIAFEEITLSSYQGQMDLLINDIK 403

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              ++  R ++   TK   + L E L +R I   Y  S          I ++  G+  V+
Sbjct: 404 ELKEEKYRTVILCGTKSKGQRLVETLGDRGIESVYKDS----------ILNVDYGE--VV 451

Query: 637 VGINLLREGLDIPECGLVAILDADKEG 663
           +       G   PE  L  I D +  G
Sbjct: 452 ISPGSQLRGFRYPEIRLCVISDKEIFG 478



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 12/188 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     G+    +I        PV+        + + D I     +  
Sbjct: 776 VLTLSATPIPRTLHMSLTGVRDISVIETPPEERYPVQTYVVEYNDQLIRDAIMREIGRDG 835

Query: 584 RILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          K MA +L + + E  I +   H ++   E  +++ D   G +D+L+  
Sbjct: 836 QVFFVYNKVESIKEMAANLGKLIPEARIAIA--HGQMSERELEKVMIDFMEGNYDILLCT 893

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ- 698
            ++  G+DI     + I +ADK G L     L   +GR  R   +      D I   +  
Sbjct: 894 TIIETGIDIQNVNTLIIYNADKMG-LSQLYQLRGRVGRTNRMAYAYFTYKKDKILTEVAE 952

Query: 699 ---LAIDE 703
               AI E
Sbjct: 953 KRLKAIKE 960



 Score = 38.5 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+ +  Y+ + DQ  AI ++   + S +   +L+ G  G GKT   +    + +   +  
Sbjct: 618 FEEEFPYNETQDQLLAIDEIKNDMESGKVMDRLICGDVGYGKTEVAIRAAFKTVMDGKQV 677

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVE 223
             + P  ILA Q Y+ FK  F    VE
Sbjct: 678 AFLVPTTILAEQHYNNFKKRFKDFPVE 704


>gi|219853470|ref|YP_002470592.1| hypothetical protein CKR_0127 [Clostridium kluyveri NBRC 12016]
 gi|219567194|dbj|BAH05178.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1183

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 97/523 (18%), Positives = 213/523 (40%), Gaps = 58/523 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              ++ GI  ++    + G++ S +++ +  V     +P +++  + + A +LY +   +
Sbjct: 26  FKDIMAGIDRKKFPIAVFGLSESSRSYLIYAVYNQQDKPFLIITHSDVEARKLYEDLCFY 85

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P   V YF             P  +       +I+  +   R    R +L     I+++
Sbjct: 86  LP--QVYYF-------------PTKEVVFYNIDAISGDLRWERLKVIREMLNPGKKIIIT 130

Query: 277 SVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V  +  +   VE Y   I ++ +GD V+ K +   L++  Y+R ++   RG F + G  
Sbjct: 131 CVESLASVYVPVELYKNYIFKISVGDKVDFKNISEKLIQCGYERMEMVERRGQFSIRGGI 190

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+    ++  +RV +FG+++E I  F   + + I  +  I+I+A    +  R  +   
Sbjct: 191 MDIYSPISQE-PYRVELFGDEVESIRNFNLESQRSIEKMNNIEIFAAKEIIFDRERIEIG 249

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              IKE+L   + +L++       ++++     +LE L+ T + +SI+++  Y       
Sbjct: 250 KSKIKEDLASIIEKLKENKNNEGMEKIKTITNKNLETLQETWTFESIDSFLPYFY----- 304

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E   +  +Y  ++  + VD+      ++  +Y           E G  LP        R 
Sbjct: 305 EHTSSFLDY-AKNYFVIVDDIKRCSGKLDSVYFEFLENYKNFLERGNVLPGQSKMLLDRS 363

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV-------DPPVEIRSARTQV 568
           E                   E    + II++ I + T ++          + + + + ++
Sbjct: 364 EL----------------IDEFNHREIIILDAIAKSTKILPPKLIVNFTQITLNNYQGKL 407

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E + +EI     +  +IL+   T+   E L + L +  I   Y           +++ ++
Sbjct: 408 ELLIEEIKHKKSKSFKILILSGTRARGERLVDTLRDNGIESSY----------RDVVNEI 457

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           + G+  +  G  L  +G + PE  +  I D +  G  + K   
Sbjct: 458 KPGEVVITFGNQL--KGFEYPEIKISVISDKEVFGKAKRKNIR 498



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +I        P++        + + D +     +G 
Sbjct: 788 VLTLSATPIPRTLHMSLVGVRDISVIETPPDERYPIQTYVVEYNDQLIRDAVLRELSRGG 847

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++  Y+ +     +V   H +++  E   II D    K+D+LV   +
Sbjct: 848 QVYFVYNRVENIKEMASYIAKLIPEGKVAVAHGQMQERELEGIIMDFMQNKYDILVSTTI 907

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DI     + I DADK G L     L   +GR  R     +    D + K +  
Sbjct: 908 IETGMDIQNVNTMVIYDADKMG-LSQLYQLRGRVGRTNRIAYCYLSYRKDKVLKEVAE 964


>gi|153952805|ref|YP_001393570.1| hypothetical protein CKL_0152 [Clostridium kluyveri DSM 555]
 gi|146345686|gb|EDK32222.1| Mfd [Clostridium kluyveri DSM 555]
          Length = 1173

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 97/523 (18%), Positives = 213/523 (40%), Gaps = 58/523 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              ++ GI  ++    + G++ S +++ +  V     +P +++  + + A +LY +   +
Sbjct: 16  FKDIMAGIDRKKFPIAVFGLSESSRSYLIYAVYNQQDKPFLIITHSDVEARKLYEDLCFY 75

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P   V YF             P  +       +I+  +   R    R +L     I+++
Sbjct: 76  LP--QVYYF-------------PTKEVVFYNIDAISGDLRWERLKVIREMLNPGKKIIIT 120

Query: 277 SVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V  +  +   VE Y   I ++ +GD V+ K +   L++  Y+R ++   RG F + G  
Sbjct: 121 CVESLASVYVPVELYKNYIFKISVGDKVDFKNISEKLIQCGYERMEMVERRGQFSIRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+    ++  +RV +FG+++E I  F   + + I  +  I+I+A    +  R  +   
Sbjct: 181 MDIYSPISQE-PYRVELFGDEVESIRNFNLESQRSIEKMNNIEIFAAKEIIFDRERIEIG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              IKE+L   + +L++       ++++     +LE L+ T + +SI+++  Y       
Sbjct: 240 KSKIKEDLASIIEKLKENKNNEGMEKIKTITNKNLETLQETWTFESIDSFLPYFY----- 294

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E   +  +Y  ++  + VD+      ++  +Y           E G  LP        R 
Sbjct: 295 EHTSSFLDY-AKNYFVIVDDIKRCSGKLDSVYFEFLENYKNFLERGNVLPGQSKMLLDRS 353

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV-------DPPVEIRSARTQV 568
           E                   E    + II++ I + T ++          + + + + ++
Sbjct: 354 EL----------------IDEFNHREIIILDAIAKSTKILPPKLIVNFTQITLNNYQGKL 397

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E + +EI     +  +IL+   T+   E L + L +  I   Y           +++ ++
Sbjct: 398 ELLIEEIKHKKSKSFKILILSGTRARGERLVDTLRDNGIESSY----------RDVVNEI 447

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           + G+  +  G  L  +G + PE  +  I D +  G  + K   
Sbjct: 448 KPGEVVITFGNQL--KGFEYPEIKISVISDKEVFGKAKRKNIR 488



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +I        P++        + + D +     +G 
Sbjct: 778 VLTLSATPIPRTLHMSLVGVRDISVIETPPDERYPIQTYVVEYNDQLIRDAVLRELSRGG 837

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++  Y+ +     +V   H +++  E   II D    K+D+LV   +
Sbjct: 838 QVYFVYNRVENIKEMASYIAKLIPEGKVAVAHGQMQERELEGIIMDFMQNKYDILVSTTI 897

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DI     + I DADK G L     L   +GR  R     +    D + K +  
Sbjct: 898 IETGMDIQNVNTMVIYDADKMG-LSQLYQLRGRVGRTNRIAYCYLSYRKDKVLKEVAE 954


>gi|330880882|gb|EGH15031.1| excinuclease ABC subunit B [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 200

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 118/200 (59%), Positives = 156/200 (78%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +
Sbjct: 1   MSEFQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQVKRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+ LL  L   QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQY 180

Query: 318 KRQDIGIIRGTFRVCGDSIE 337
            R D+   R TFRV GD I+
Sbjct: 181 TRNDMDFARATFRVRGDVID 200


>gi|156301952|ref|XP_001617427.1| hypothetical protein NEMVEDRAFT_v1g226090 [Nematostella vectensis]
 gi|156193726|gb|EDO25327.1| predicted protein [Nematostella vectensis]
          Length = 221

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 113/219 (51%), Positives = 152/219 (69%)

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
           +VT    L  A+  I++++  ++   ++ G+ LEA+RLE+R  +DLEM+   G C  IEN
Sbjct: 2   FVTSPDVLQKAIWEIQQDMVKQVDYFKEIGKHLEAKRLEERTNFDLEMIRELGYCSGIEN 61

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
           YSRYL GR  G  P  L +Y P+D L+ VDESHVTI Q+  MY GD  RK  L EYGFRL
Sbjct: 62  YSRYLDGREAGTRPFCLLDYFPDDFLMVVDESHVTISQVHAMYGGDRSRKENLVEYGFRL 121

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           P+ MDNRPL+FEE+  L+   + VSATP  +ELE+ +GI VEQIIRPTGL+DP +EIR +
Sbjct: 122 PAAMDNRPLKFEEFEALQNQVVYVSATPADYELEKSEGIYVEQIIRPTGLLDPIIEIRPS 181

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
             Q++D+ +EI L  +   R+L+T LTKRMAE+LT+YL 
Sbjct: 182 ENQIDDLIEEIQLRCEADERVLITTLTKRMAEELTKYLT 220


>gi|261885396|ref|ZP_06009435.1| excinuclease ABC subunit B [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 234

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 118/234 (50%), Positives = 162/234 (69%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + PS DQ  A+  ++  I S  K  +LLGVTGSGKTFTMA VI+ +  P +
Sbjct: 1   MDKFEISSKFKPSDDQEKAVTNIVDSIRSGNKFNVLLGVTGSGKTFTMANVIKRLNMPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +M  NK LAAQLYSEFK FFP N VEYF+SYYDYYQPEAY+PR D +IEK+SSINE+++R
Sbjct: 61  IMTHNKSLAAQLYSEFKGFFPKNHVEYFISYYDYYQPEAYIPRQDLFIEKDSSINEELER 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           +R SAT +LLE +D +VV+SVS  YG+G+   Y  M++ L +G S+ QKELL  LV   Y
Sbjct: 121 LRLSATANLLEFDDVVVVASVSANYGLGNPAEYKGMVLLLSLGMSLNQKELLLKLVDMGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           KR D    RG FRV GD ++I+P++  D A R+  FG++++ +  F  L  ++ 
Sbjct: 181 KRNDAYFDRGDFRVNGDVVDIYPAYFNDEAIRLEFFGDELDAMYHFDVLENKRT 234


>gi|18311466|ref|NP_563400.1| transcription-repair coupling factor [Clostridium perfringens str.
           13]
 gi|18146150|dbj|BAB82190.1| transcription-repair coupling factor [Clostridium perfringens str.
           13]
          Length = 1162

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 100/515 (19%), Positives = 212/515 (41%), Gaps = 58/515 (11%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A  ++   + S     ++ G++ SGK++ +  + E   +P +V+  N I A  +Y +  
Sbjct: 8   EAFQKVKSFMESGNYPVMINGLSDSGKSYFINGIYEESDKPIVVVTHNDIEARNIYEDLS 67

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            + P+                 Y+P  +       +I+  +   R    + +L     I+
Sbjct: 68  FYLPN---------------VYYLPSREIVFYNIDAISGDLRWARLKVIKEMLRSTKKII 112

Query: 275 VSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S+       + +  Y   I+++K+GD V+ KE+   L++  Y+R +    +G F + G
Sbjct: 113 VTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYERLETVEGKGEFSLRG 172

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             +++FP +  +  +R+ +FG++++ I  F   + + I  V+  +I+     +  + T+ 
Sbjct: 173 GILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEIFPAKEVILSKETIE 231

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A++ +++EL       +K       +RL + I  ++E L+   S ++I++Y  +     
Sbjct: 232 HAIEKMRKELSE---FEKKVSDKEIKERLRKLIERNIESLQENWSFETIDSYLPFFF--- 285

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             + P TLF+Y+  +    +D++     ++               E G  LPS + N  L
Sbjct: 286 --DKPATLFDYLN-NYTFIIDDAKRCKGKLESTVFEFTENYEAFLERGSILPSQI-NLSL 341

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA-----RTQV 568
             E          V++  P         G  +E            VE++ +     + Q+
Sbjct: 342 SAEVVEESFKGNKVINLAP------FGDGGFIESF--------NKVEVKQSTKSGYQGQL 387

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + + D+I    + G R L+   T+   E L   L E  I   Y           + + ++
Sbjct: 388 DMLIDDIKENKKNGFRTLILSGTRPRGERLVNTLRELEIESVY----------KDDVDEI 437

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             G+  V++      +G + P+  L  I D    G
Sbjct: 438 NNGE--VVITFGEQNKGFEYPDIKLCLISDKSVFG 470



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     G+    +I        P++        + + D I     +  
Sbjct: 769 VLTLSATPIPRTLHMSLTGVRDISVIETPPENRYPIQTYVVEQNDQLIRDAILREINRDG 828

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++  Y+ E     +   +H ++   +    + D    K+DVLV  ++
Sbjct: 829 QVYFVHNRVESIQEIANYIQELVPECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSI 888

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + + DADK G  +    L Q  GR  R+       +     K     +
Sbjct: 889 IETGIDISNVNTMIVNDADKMGLSQ----LYQLRGRVGRSNKVAYAYFLYQRDK----VL 940

Query: 702 DETTRRREKQLE 713
            E   +R K L+
Sbjct: 941 TEVAEKRLKALK 952


>gi|168213408|ref|ZP_02639033.1| transcription-repair coupling factor [Clostridium perfringens CPE
           str. F4969]
 gi|170715029|gb|EDT27211.1| transcription-repair coupling factor [Clostridium perfringens CPE
           str. F4969]
          Length = 1168

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 100/515 (19%), Positives = 211/515 (40%), Gaps = 58/515 (11%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A  ++   + S     ++ G++ SGK++ +  + E   +P +V+  N I A  +Y +  
Sbjct: 14  EAFQKVKSFMESGNYPVMINGLSDSGKSYFINGIYEESDKPIVVVTHNDIEARNIYEDLS 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            + P+                 Y+P  +       +I+  +   R    + +L     I+
Sbjct: 74  FYLPN---------------VYYLPSREIVFYNIDAISGDLRWARLKVIKEMLRSTKKII 118

Query: 275 VSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S+       + +  Y   I+++K+GD V+ KE+   L++  Y+R +    +G F + G
Sbjct: 119 VTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYERLETVEGKGEFSLRG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             +++FP +  +  +R+ +FG++++ I  F   + + I  V+  +I+     +  + T+ 
Sbjct: 179 GILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEIFPAKEVILSKETIE 237

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A++ +++EL        K       +RL + I  ++E L+   S ++I++Y  +     
Sbjct: 238 HAIEKMRKELS---DFENKVSDKEIKERLRKLIERNIESLQENWSFETIDSYLPFFF--- 291

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             + P TLF+Y+  +    +D++     ++               E G  LPS + N  L
Sbjct: 292 --DKPATLFDYLN-NYTFIIDDAKRCKGKLESTVFEFTENYEAFLERGSILPSQI-NLSL 347

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA-----RTQV 568
             E          V++  P         G  +E            VE++ +     + Q+
Sbjct: 348 SAEVVEESFKGNKVINLAP------FGDGGFIESF--------NKVEVKQSTKSGYQGQL 393

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + + D+I    + G R L+   T+   E L   L E  I   Y           + + ++
Sbjct: 394 DMLIDDIKENKKNGFRTLILSGTRPRGERLVNTLRELEIESVY----------KDEVDEI 443

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             G+  V++      +G + P+  L  I D    G
Sbjct: 444 NNGE--VVITFGEQNKGFEYPDIKLCLISDKSVFG 476



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     G+    +I        P++        + + D I     +  
Sbjct: 775 VLTLSATPIPRTLHMSLTGVRDISVIETPPENRYPIQTYVVEQNDQLIRDAILREINRDG 834

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++  Y+ E     +   +H ++   +    + D    K+DVLV  ++
Sbjct: 835 QVYFVHNRVESIQEVANYIQELVPECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + + DADK G  +    L Q  GR  R+       +     K     +
Sbjct: 895 IETGIDISNVNTMIVNDADKMGLSQ----LYQLRGRVGRSNKVAYAYFLYQRDK----VL 946

Query: 702 DETTRRREKQLE 713
            E   +R K L+
Sbjct: 947 TEVAEKRLKALK 958


>gi|110799729|ref|YP_697172.1| transcription-repair coupling factor [Clostridium perfringens ATCC
           13124]
 gi|110674376|gb|ABG83363.1| transcription-repair coupling factor [Clostridium perfringens ATCC
           13124]
          Length = 1162

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 100/515 (19%), Positives = 211/515 (40%), Gaps = 58/515 (11%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A  ++   + S     ++ G++ SGK++ +  + E   +P +V+  N I A  +Y +  
Sbjct: 8   EAFQKVKSFMESGNYPVMINGLSDSGKSYFINGIYEESDKPIVVVTHNDIEARNIYEDLS 67

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            + P+                 Y+P  +       +I+  +   R    + +L     I+
Sbjct: 68  FYLPN---------------VYYLPSREIVFYNIDAISGDLRWARLKVIKEMLRSTKKII 112

Query: 275 VSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S+       + +  Y   I+++K+GD V+ KE+   L++  Y+R +    +G F + G
Sbjct: 113 VTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYERLETVEGKGEFSLRG 172

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             +++FP +  +  +R+ +FG++++ I  F   + + I  V+  +I+     +  + T+ 
Sbjct: 173 GILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEIFPAKEVILSKETIE 231

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A++ +++EL        K       +RL + I  ++E L+   S ++I++Y  +     
Sbjct: 232 HAIEKMRKELS---DFENKVSDKEIKERLRKLIERNIESLQENWSFETIDSYLPFFF--- 285

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             + P TLF+Y+  +    +D++     ++               E G  LPS + N  L
Sbjct: 286 --DKPATLFDYLN-NYTFIIDDAKRCKGKLESTVFEFTENYEAFLERGSILPSQI-NLSL 341

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA-----RTQV 568
             E          V++  P         G  +E            VE++ +     + Q+
Sbjct: 342 SAEVVEESFKGNKVINLAP------FGDGGFIESF--------NKVEVKQSTKSGYQGQL 387

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + + D+I    + G R L+   T+   E L   L E  I   Y           + + ++
Sbjct: 388 DMLIDDIKENKKNGFRTLILSGTRPRGERLVNTLRELEIESVY----------KDEVDEI 437

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             G+  V++      +G + P+  L  I D    G
Sbjct: 438 NNGE--VVITFGEQNKGFEYPDIKLCLISDKSVFG 470



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     G+    +I        P++        + + D I     +  
Sbjct: 769 VLTLSATPIPRTLHMSLTGVRDISVIETPPENRYPIQTYVVEQNDQLIRDAILREINRDG 828

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++  Y+ E     +   +H ++   +    + D    K+DVLV  ++
Sbjct: 829 QVYFVHNRVESIQEVANYIQELVPECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSI 888

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + + DADK G  +    L Q  GR  R+       +     K     +
Sbjct: 889 IETGIDISNVNTMIVNDADKMGLSQ----LYQLRGRVGRSNKVAYAYFLYQRDK----VL 940

Query: 702 DETTRRREKQLE 713
            E   +R K L+
Sbjct: 941 TEVAEKRLKALK 952


>gi|298364138|gb|ADI79212.1| UvrABC system protein B [Halococcus hamelinensis]
          Length = 234

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 110/235 (46%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           QPEAYV  +DTYI+K++SIN++IDR+RHSATRSLL R+D IVV+SVS IYG+G   +Y  
Sbjct: 1   QPEAYVEASDTYIDKDASINDEIDRLRHSATRSLLTRDDVIVVASVSAIYGLGDPRNYID 60

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
           M ++L +GD++++ +LL  LV   Y+R D+   +GTFRV GD++EIFP +    A RV  
Sbjct: 61  MSLELDVGDTIDRDDLLKRLVDLNYERNDVDFTQGTFRVRGDTVEIFPMYG-RFAVRVEF 119

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           +G++I+ +S+  PL G+   +   + I+   HY  P  TL+TA+  I+  ++ R+   E+
Sbjct: 120 WGDEIDRLSKLDPLEGEVKSDEPAVLIHPAEHYSIPENTLDTAINEIEGLMEERVSYFER 179

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
              L+ AQR+E+R T+DLEML  TG C  IENYS +L+ R PG+ P TL +Y P+
Sbjct: 180 NNDLVAAQRIEERTTFDLEMLRETGYCSGIENYSVHLSDREPGDAPATLLDYFPD 234


>gi|170763931|ref|ZP_02635347.2| transcription-repair coupling factor [Clostridium perfringens B
           str. ATCC 3626]
 gi|170764087|ref|ZP_02631749.2| transcription-repair coupling factor [Clostridium perfringens E
           str. JGS1987]
 gi|170662722|gb|EDT15405.1| transcription-repair coupling factor [Clostridium perfringens E
           str. JGS1987]
 gi|170712080|gb|EDT24262.1| transcription-repair coupling factor [Clostridium perfringens B
           str. ATCC 3626]
          Length = 1168

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 100/515 (19%), Positives = 212/515 (41%), Gaps = 58/515 (11%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A  ++   + S     ++ G++ SGK++ +  + E   +P +V+  N I A  +Y +  
Sbjct: 14  EAFQKVKSFMESGNYPVMINGLSDSGKSYFINGIYEESDKPIVVVTHNDIEARNIYEDLS 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            + P+                 Y+P  +       +I+  +   R    + +L     I+
Sbjct: 74  FYLPN---------------VYYLPSREIVFYNIDAISGDLRWARLKVIKEMLRSTKKII 118

Query: 275 VSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S+       + +  Y   I+++K+GD V+ KE+   L++  Y+R +    +G F + G
Sbjct: 119 VTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYERLETVEGKGEFSLRG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             +++FP +  +  +R+ +FG++++ I  F   + + I  V+  +I+     +  + T+ 
Sbjct: 179 GILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEIFPAKEVILSKETIE 237

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A++ +++EL        K       +RL + I  ++E L+   S ++I++Y  +     
Sbjct: 238 HAIEKMRKELS---DFENKVSDKEIKERLRKLIERNIESLQENWSFETIDSYLPFFF--- 291

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             + P TLF+Y+  +    +D++     ++               E G  LPS + N  L
Sbjct: 292 --DKPATLFDYLN-NYTFIIDDAKRCKGKLESTVFEFTENYEAFLERGSILPSQI-NLSL 347

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA-----RTQV 568
             E          V++  P        +G  +E            VE++ +     + Q+
Sbjct: 348 SAEVVEESFKGNKVINLAP------FGEGGFIESF--------NKVEVKQSTKSGYQGQL 393

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + + D+I    + G R L+   T+   E L   L E  I   Y           + + ++
Sbjct: 394 DMLIDDIKENKKNGFRTLILSGTRPRGERLVNTLRELEIESVY----------KDDVDEI 443

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             G+  V++      +G + P+  L  I D    G
Sbjct: 444 NNGE--VVITFGEQNKGFEYPDIKLCLISDKSVFG 476



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     G+    +I        P++        + + D I     +  
Sbjct: 775 VLTLSATPIPRTLHMSLTGVRDISVIETPPENRYPIQTYVVEQNDQLIRDAILREINRDG 834

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++  Y+ E     +   +H ++   +    + D    K+DVLV  ++
Sbjct: 835 QVYFVHNRVESIQEVANYIQELVPECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + + DADK G  +    L Q  GR  R+       +     K     +
Sbjct: 895 IETGIDISNVNTMIVNDADKMGLSQ----LYQLRGRVGRSNKVAYAYFLYQRDK----VL 946

Query: 702 DETTRRREKQLE 713
            E   +R K L+
Sbjct: 947 TEVAEKRLKALK 958


>gi|182420518|ref|ZP_02643226.2| transcription-repair coupling factor [Clostridium perfringens NCTC
           8239]
 gi|182380350|gb|EDT77829.1| transcription-repair coupling factor [Clostridium perfringens NCTC
           8239]
          Length = 1168

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 100/515 (19%), Positives = 211/515 (40%), Gaps = 58/515 (11%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A  ++   + S     ++ G++ SGK++ +  + E   +P +V+  N I A  +Y +  
Sbjct: 14  EAFQKVKSFMESGNYPVMINGLSDSGKSYFINGIYEESDKPIVVVTHNDIEARNIYEDLS 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            + P+                 Y+P  +       +I+  +   R    + +L     I+
Sbjct: 74  FYLPN---------------VYYLPSREIVFYNIDAISGDLRWARLKVIKEMLRSTKKII 118

Query: 275 VSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S+       + +  Y   I+++K+GD V+ KE+   L++  Y+R +    +G F + G
Sbjct: 119 VTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYERLETVEGKGEFSLRG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             +++FP +  +  +R+ +FG++++ I  F   + + I  V+  +I+     +  + T+ 
Sbjct: 179 GILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEIFPAKEVILSKETIE 237

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A++ +++EL        K       +RL + I  ++E L+   S ++I++Y  +     
Sbjct: 238 HAIEKMRKELS---DFENKVSDKEIKERLRKLIERNIESLQENWSFETIDSYLPFFF--- 291

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             + P TLF+Y+  +    +D++     ++               E G  LPS + N  L
Sbjct: 292 --DKPATLFDYLN-NYTFIIDDAKRCKGKLESTVFEFTENYEAFLERGSILPSQI-NLSL 347

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA-----RTQV 568
             E          V++  P         G  +E            VE++ +     + Q+
Sbjct: 348 SAEVVEESFKGNKVINLAP------FGDGGFIESF--------NKVEVKQSTKSGYQGQL 393

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + + D+I    + G R L+   T+   E L   L E  I   Y           + + ++
Sbjct: 394 DMLIDDIKENKKNGFRTLILSGTRPRGERLVNTLRELEIESVY----------KDEVDEI 443

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             G+  V++      +G + P+  L  I D    G
Sbjct: 444 NNGE--VVITFGEQNKGFEYPDIKLCLISDKSVFG 476



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     G+    +I        P++        + + D I     +  
Sbjct: 775 VLTLSATPIPRTLHMSLTGVRDISVIETPPENRYPIQTYVVEQNDQLIRDAILREINRDG 834

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++  Y+ E     +   +H ++   +    + D    K+DVLV  ++
Sbjct: 835 QVYFVHNRVESIQEIANYIQELVPECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + + DADK G  +    L Q  GR  R+       +     K     +
Sbjct: 895 IETGIDISNVNTMIVNDADKMGLSQ----LYQLRGRVGRSNKVAYAYFLYQRDK----VL 946

Query: 702 DETTRRREKQLE 713
            E   +R K L+
Sbjct: 947 TEVAEKRLKALK 958


>gi|169343325|ref|ZP_02864335.1| transcription-repair coupling factor [Clostridium perfringens C
           str. JGS1495]
 gi|169298623|gb|EDS80704.1| transcription-repair coupling factor [Clostridium perfringens C
           str. JGS1495]
          Length = 1168

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 99/515 (19%), Positives = 212/515 (41%), Gaps = 58/515 (11%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A  ++   + S     ++ G++ SGK++ +  + E   +P +V+  N I A  +Y +  
Sbjct: 14  EAFQKVKSFMESGNYPVMINGLSDSGKSYFINGIYEESDKPIVVVTHNDIEARNIYEDLS 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            + P+                 Y+P  +       +I+  +   R    + +L     I+
Sbjct: 74  FYLPN---------------VYYLPSREIVFYNIDAISGDLRWARLKVIKEMLRSTKKII 118

Query: 275 VSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S+       + +  Y   I+++K+GD V+ KE+   L++  Y+R +    +G F + G
Sbjct: 119 VTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYERLETVEGKGEFSLRG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             +++FP +  +  +R+ +FG++++ I  F   + + I  V+  +I+     +  + T+ 
Sbjct: 179 GILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEIFPAKEVILSKETIE 237

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A++ +++EL       +K       +RL + I  ++E L+   S ++I++Y  +     
Sbjct: 238 HAIEKMRKELSE---FEKKVSDKEIKERLRKLIERNIESLQENWSFETIDSYLPFFF--- 291

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             + P TLF+Y+  +    +D++     ++               E G  LPS + N  L
Sbjct: 292 --DKPATLFDYLN-NYTFIIDDAKRCKGKLESTVFEFTENYEAFLERGSILPSQI-NLSL 347

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA-----RTQV 568
             +          V++  P         G  +E            VE++ +     + Q+
Sbjct: 348 SADVVEESFKGNKVINLAP------FGDGGFIEAF--------NKVEVKQSTKSGYQGQL 393

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + + D+I    + G R L+   T+   E L   L E  I   Y           + + ++
Sbjct: 394 DMLIDDIKENKKNGFRTLILSGTRPRGERLVNTLRELEIESVY----------KDDVDEI 443

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             G+  V++      +G + P+  L  I D    G
Sbjct: 444 NNGE--VVITFGEQNKGFEYPDIKLCLISDKSVFG 476



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     G+    +I        P++        + + D I     +  
Sbjct: 775 VLTLSATPIPRTLHMSLTGVRDISVIETPPENRYPIQTYVVEQNDQLIRDAILREINRDG 834

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++  Y+ E     +   +H ++   +    + D    K+DVLV  ++
Sbjct: 835 QVYFVHNRVESIQEVANYIQELVPECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + + DADK G  +    L Q  GR  R+       +     K     +
Sbjct: 895 IETGIDISNVNTMIVNDADKMGLSQ----LYQLRGRVGRSNKVAYAYFLYQRDK----VL 946

Query: 702 DETTRRREKQLE 713
            E   +R K L+
Sbjct: 947 TEVAEKRLKALK 958


>gi|213423574|ref|ZP_03356554.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 247

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 129/241 (53%), Positives = 166/241 (68%), Gaps = 8/241 (3%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
              TQV+D+  EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+ER+
Sbjct: 1   PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 60

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAARNV
Sbjct: 61  EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 120

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI--------D 734
           N K ILY D IT S+  AI ET RRREKQ ++N++H I PQ + +K+++++         
Sbjct: 121 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 180

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
               +    +       +L ++ K  +  +  L +QM   A NL FEEAA+IRD++ +L+
Sbjct: 181 KAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEEQMMQHAQNLEFEEAAQIRDQLHQLR 240

Query: 795 S 795
            
Sbjct: 241 E 241


>gi|182624347|ref|ZP_02952132.1| transcription-repair coupling factor [Clostridium perfringens D
           str. JGS1721]
 gi|177910565|gb|EDT72938.1| transcription-repair coupling factor [Clostridium perfringens D
           str. JGS1721]
          Length = 1168

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 99/515 (19%), Positives = 211/515 (40%), Gaps = 58/515 (11%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A  ++   + S     ++ G++ SGK++ +  + E   +P +V+  N I A  +Y +  
Sbjct: 14  EAFQKVKSFMESGNYPVMINGLSDSGKSYFINGIYEESDKPIVVVTHNDIEARNIYEDLS 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            + P+                 Y+P  +       +I+  +   R    + +L     I+
Sbjct: 74  FYLPN---------------VYYLPSREIVFYNIDAISGDLRWARLKVIKEMLRSTKKII 118

Query: 275 VSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S+       + +  Y   I+++K+GD V+ KE+   L++  Y+R +    +G F + G
Sbjct: 119 VTSIDAFAATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYERLETVEGKGEFSLRG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             +++FP +  +  +R+ +FG++++ I  F   + + I  V+  +++     +  + T+ 
Sbjct: 179 GILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEVFPAKEVILSKETIE 237

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A++ +++EL        K       +RL + I  ++E L+   S ++I++Y  +     
Sbjct: 238 HAVEKMRKELS---DFENKVSDKEIKERLRKLIERNIESLQENWSFETIDSYLPFFF--- 291

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             + P TLF+Y+  +    +D++     ++               E G  LPS + N  L
Sbjct: 292 --DKPATLFDYLN-NYTFIIDDAKRCKGKLESTVFEFTENYEAFLERGSILPSQI-NLSL 347

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA-----RTQV 568
             E          V++  P         G  +E            VE++ +     + Q+
Sbjct: 348 SAEVVEESFKGNKVINLAP------FGDGGFIESF--------NKVEVKQSTKSGYQGQL 393

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + + D+I    + G R L+   T+   E L   L E  I   Y           + + ++
Sbjct: 394 DMLIDDIKENKKNGFRTLILSGTRPRGERLVNTLRELEIESVY----------KDEVDEI 443

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             G+  V++      +G + P+  L  I D    G
Sbjct: 444 NNGE--VVITFGEQNKGFEYPDIKLCLISDKSVFG 476



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     G+    +I        P++        + + D I     +  
Sbjct: 775 VLTLSATPIPRTLHMSLTGVRDISVIETPPENRYPIQTYVVEQNDQLIRDAILREINRDG 834

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++  Y+ E     +   +H ++   +    + D    K+DVLV  ++
Sbjct: 835 QVYFVHNRVESIQEVANYIQELVPECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + + DADK G  +    L Q  GR  R+       +     K     +
Sbjct: 895 IETGIDISNVNTMIVNDADKMGLSQ----LYQLRGRVGRSNKVAYAYFLYQRDK----VL 946

Query: 702 DETTRRREKQLE 713
            E   +R K L+
Sbjct: 947 TEVAEKRLKALK 958


>gi|110803113|ref|YP_699740.1| transcription-repair coupling factor [Clostridium perfringens
           SM101]
 gi|110683614|gb|ABG86984.1| transcription-repair coupling factor [Clostridium perfringens
           SM101]
          Length = 1162

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 99/515 (19%), Positives = 210/515 (40%), Gaps = 58/515 (11%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A  ++   + S     ++ G++ SGK++ +  + E   +P +V+  N I A  +Y +  
Sbjct: 8   EAFQKVKSFMESGNYPVMINGLSDSGKSYFINGIYEESDKPIVVVTHNDIEARNIYEDLS 67

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            + P+                 Y+P  +       +I+  +   R    + +L     I+
Sbjct: 68  FYLPN---------------VYYLPSREIVFYNIDAISGDLRWARLKVIKEMLRSTKKII 112

Query: 275 VSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S+       + +  Y   I+++K+GD V+ KE+   L++  Y+R +    +G F + G
Sbjct: 113 VTSIDAFVATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYERLETVEGKGEFSLRG 172

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             +++FP +  +  +R+ +FG++++ I  F   + + I  V+  +I+     +  + T+ 
Sbjct: 173 GILDVFPPNSAN-PFRIELFGDEVDSIRTFNVESQRSIEKVKRAEIFPAKEVILSKETIE 231

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A++ +++EL        K        +L + I  ++E L+   S ++I++Y  +     
Sbjct: 232 HAIEKMRKELS---DFENKVSDKEIKDKLRKLIEKNIESLQENWSFETIDSYLPFFF--- 285

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             + P TLF+Y+  +    +D++     ++               E G  LPS + N  L
Sbjct: 286 --DKPATLFDYLN-NYTFIIDDAKRCKGKLESTVFEFTENYEAFLERGSILPSQI-NLSL 341

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA-----RTQV 568
             E          V++  P         G  +E            VE++ +     + Q+
Sbjct: 342 SAEVVEESFKRNKVINLVP------FGDGGFIESF--------NKVEVKQSTKSGYQGQL 387

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + + D+I    + G R L+   T+   E L   L E  I   Y           + + ++
Sbjct: 388 DMLIDDIKENKKNGFRTLILSGTRPRGERLVNTLRELEIESVY----------KDEVDEI 437

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             G+  V++      +G + P+  L  I D    G
Sbjct: 438 NNGE--VVITFGEQNKGFEYPDIKLCLISDKSVFG 470



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     G+    +I        P++        + + D I     +G 
Sbjct: 769 VLTLSATPIPRTLHMSLTGVRDISVIETPPENRYPIQTYVVEQNDQLIRDAILREINRGG 828

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++  Y+ E     +   +H ++   +    + D    K+DVLV  ++
Sbjct: 829 QVYFVHNRVESIQEVANYIQELVPECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSI 888

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + + DADK G  +    L Q  GR  R+       +     K     +
Sbjct: 889 IETGIDISNVNTMIVNDADKMGLSQ----LYQLRGRVGRSNKVAYAYFLYQRDK----VL 940

Query: 702 DETTRRREKQLE 713
            E   +R K L+
Sbjct: 941 TEVAEKRLKALK 952


>gi|302388692|ref|YP_003824513.1| transcription-repair coupling factor [Thermosediminibacter oceani
           DSM 16646]
 gi|302199320|gb|ADL06890.1| transcription-repair coupling factor [Thermosediminibacter oceani
           DSM 16646]
          Length = 1177

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/515 (20%), Positives = 197/515 (38%), Gaps = 48/515 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             +L   +          G++ S + F +A V +   +P +V+  + + A +L  +   F
Sbjct: 13  FNKLAGDLEKGLSGLFAYGLSDSQRAFLIAAVRKRFPKPVLVVTADSLDARKLADDLAYF 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                VE F             P +     + ++ + ++   R     SL+     +VVS
Sbjct: 73  LGTEDVEMF-------------PASSVIPYETAARSPELTAQRLKVMESLVTGKQPVVVS 119

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            +  +   +   +   +  ++L++GDS+  +E +  L    Y+R D    RG F V G  
Sbjct: 120 PLQALTNRMMPPDVVKKFTIKLRVGDSIPLEEAVLKLSFMGYERVDTVEGRGQFAVRGGI 179

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++++P   E+  +R+  FG++++ I EF     + +  +E + I+     V  R T   A
Sbjct: 180 LDVYPLTAEN-PYRMEFFGDEVDSIREFSVEDQRSMDKLEEVFIFPAREVVFDRETAKNA 238

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              I  EL+ R    E  G    A +LE++I   +E LE     +S ++Y  +       
Sbjct: 239 AISIARELEDRKKAFELTGSAQIAAQLEEKILEHIEKLENGQFFESAQHYISHFYSNLSA 298

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
                L +Y     L+ + E    +                L E G  LPS  +     F
Sbjct: 299 -----LTDYFTLPPLVILVEPGKIVESTKNSAFEIEETYKGLLEKGEVLPSVSEMYFTPF 353

Query: 516 EEWNCLRP-TTIVVS---ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           +    LR   T+ +S     PG +E+          +              S   +V+ +
Sbjct: 354 DILENLRKSKTVYISMLPRIPGEFEIGGLYSFQFRSVT-------------SFHGKVDLL 400

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +E+    ++G R+++   T    + L+  L E+ +   +            +  +L  G
Sbjct: 401 AEEVAHFKKKGYRVVILSGTGERGKHLSRTLREKALDAAFY---------GTLGDELLPG 451

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           +  V++    L +G  IPE     I D D  G  +
Sbjct: 452 Q--VVITPGSLEKGFQIPEIKFALISDLDVYGQPK 484



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 11/183 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    ++        P++          + D I     +G 
Sbjct: 779 VLTMTATPIPRTLHMAMTGIRDMSVMETPPENRYPIQTYVVEYSDSLIRDAIMRELSRGG 838

Query: 584 RILLTVLTKR-MAED---LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++         + E+   L+  + E  I V   H ++   E  E++ D    ++DVLV  
Sbjct: 839 QVYYVYNRVNTIYEEAKRLSALVPEARIAVA--HGQMHENELEEVMMDFYEHRYDVLVCT 896

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + ++ AD+ G  +    L Q  GR  R+       +     K++  
Sbjct: 897 TIIETGLDIPNVNTLIVISADRFGLSQ----LYQLRGRVGRSSTQAFAYFTYKKDKTLSE 952

Query: 700 AID 702
           A +
Sbjct: 953 AAE 955


>gi|134297990|ref|YP_001111486.1| transcription-repair coupling factor [Desulfotomaculum reducens
           MI-1]
 gi|134050690|gb|ABO48661.1| transcription-repair coupling factor [Desulfotomaculum reducens
           MI-1]
          Length = 1169

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 108/524 (20%), Positives = 202/524 (38%), Gaps = 55/524 (10%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             LL+G+    + Q++ G++GS +++  A +    Q   +++ P +  A  L  +     
Sbjct: 15  QHLLQGLEKGFRQQMVFGLSGSQRSYLFAGLAHGWQ-SVLIVTPGETEAGTLADDLATLL 73

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
           P  +V+ F             P       +  + + ++   R      L      +VV+S
Sbjct: 74  PEVSVQPF-------------PVWQLLPYQVLAHSNEVLAQRLRVLEKLSTGKPTVVVTS 120

Query: 278 VSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           V  +   +   E +    V+L +G  V+ ++L   LV+  Y R D+   RG F   G  +
Sbjct: 121 VDALLRRLTPPEVFRCAKVKLSLGQQVDLEKLRFELVELGYTRVDLVEGRGQFSSRGGIL 180

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +I+P   E +  R+  F ++++ I  F     + +  ++ I I      V          
Sbjct: 181 DIYPM-SEALPVRIEFFDDEVDSIRHFEVDNQRSLDKLKEINISPCRELVVTPAGWQRCE 239

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           +    E K +L +L++ G +    +L  +    LE +        +E    Y        
Sbjct: 240 ENYSLEFKNQLKKLQRSGSVDAVHQLSSQGAMLLEQIRRRVPFDGMEQLLYYFYP----- 294

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P TL +Y     LL VD+          + +        L   G  LP    +    + 
Sbjct: 295 EPITLLDYFTAAPLLLVDDPIRFKEVAETILKERNETYTDLLGKGKVLPGYFSS----YL 350

Query: 517 EWNCL-----RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVED 570
           EW  L     R  TI  S  P +            Q +RP  +V+ P + + S     E 
Sbjct: 351 EWRQLLASIERQQTIFCSFLPRN-----------PQYLRPQNVVNFPAKAMHSFLGHAEV 399

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + DEI    ++G  I L V ++  A +L + L +         S++      ++ +++R 
Sbjct: 400 LADEIRHWRRRGYAITLLVSSEERAANLLKTLKD---------SKIDAFRVKQLDQEVRE 450

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           G  +V++ +  +  G ++    LV I DA  E F + K +  Q 
Sbjct: 451 G--NVVITVGQMANGFELISARLVVITDA--EIFGQRKKARKQR 490



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 21/192 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVED-----VYDEINLA 578
            + +SATP    L           +R T L++ P E R   +T V +     + + I   
Sbjct: 777 VLTLSATPIPRTLHMSLVG-----VRDTSLLETPPEERFPVQTYVLEEDPVLIREAIKRE 831

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVL 636
             +G ++          + L  +L       R    H ++K  E  +I+ +   G++DVL
Sbjct: 832 LNRGGQVYFVHNRVMDLDRLAGWLQNLVPEARIGMAHGQMKEDELEQIMIEFMDGEYDVL 891

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  GLDI     + + DAD  G  +    L Q  GR  R        +     K 
Sbjct: 892 VCTTIVETGLDISNVNTLIVKDADHFGLSQ----LYQLRGRVGRTNRLAYAYFLFRRDK- 946

Query: 697 IQLAIDETTRRR 708
               + E + RR
Sbjct: 947 ---VLTEISERR 955


>gi|326560138|gb|EGE10528.1| excinuclease ABC subunit B [Moraxella catarrhalis 46P47B1]
          Length = 244

 Score =  280 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 124/204 (60%), Positives = 164/204 (80%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F+M TD+ PSGDQP AIA+L+KG+ +  + QLLLGVTGSGKT+TMAKVI    RPAI+MA
Sbjct: 41  FEMVTDFEPSGDQPKAIAELVKGVEADMRGQLLLGVTGSGKTYTMAKVIAECGRPAIIMA 100

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK+S+IN+ ID+MR 
Sbjct: 101 HNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPASDTFIEKDSAINDHIDQMRL 160

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATR+LLER D I+V+SVS IYG+G  ESY +M++ + +GD V +  ++  LV+ QY+R 
Sbjct: 161 SATRALLERRDAIIVASVSAIYGLGDPESYLKMLLHIVVGDRVHRDAVIKRLVELQYERN 220

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLE 344
           ++   RGT+R+ G++++I+P+  E
Sbjct: 221 ELDFGRGTYRIRGETLDIYPAESE 244


>gi|331268338|ref|YP_004394830.1| transcription-repair coupling factor [Clostridium botulinum
           BKT015925]
 gi|329124888|gb|AEB74833.1| transcription-repair coupling factor [Clostridium botulinum
           BKT015925]
          Length = 1169

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 109/553 (19%), Positives = 234/553 (42%), Gaps = 62/553 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q      ++K I   E    + G + SG+ + +  + +   RP  +   + + A  LY +
Sbjct: 12  QNNEFENIVKNIQKDEFPIDVTGFSESGRAYFIKGIYDNEDRPIFIFTNSDVEAKNLYED 71

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
              + P+  V YF             P  +       +I+  +   R    R +L ++  
Sbjct: 72  LSLYIPN--VYYF-------------PNKEVVFYNVYAISGDLRWERLKIIREMLRQDRK 116

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IVV+S+  +     S + Y +  + + +GD ++ + L   L++  Y+R  I   +G F V
Sbjct: 117 IVVASIETLASTYISPKLYREYTINISVGDILDIEVLSEKLIQSGYQRTSIVEGKGEFSV 176

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++I+ S +  + +R+ +FG++++ I  F   + + I   ++++I+     V  + +
Sbjct: 177 RGGILDIY-SPISSIPFRIELFGDEVDSIRSFNTESQRSIEKYKSMEIFPAKELVLTKES 235

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           ++    +IK++L+   + L+++  +LE  ++E+    +LE L+ + S ++++++  Y   
Sbjct: 236 IDKGYNFIKDDLEKVKVSLKEDKDILE--KIEKDTLANLESLKESWSFENMDSFMPYFY- 292

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               E   TL +Y+ E+ L+F+++   ++ ++  +Y         L E G  L       
Sbjct: 293 ----ENSSTLLDYM-ENPLVFINDVQRSLGKLDTVYFEFIENYKHLLEKGNILS------ 341

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-------VEIRSA 564
                     R + ++VS      ++     I +  I +   ++ P        + + S 
Sbjct: 342 ----------RQSELLVSKDELIQKITDSNIITLNVIYKERNILKPKHKESFEQIILNSY 391

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + +EIN   Q G + L+   T+   E L E L + NI   Y           ++
Sbjct: 392 GGKLDLLVEEINSKKQNGYKTLILSGTRPRGERLVEALRDYNIESVY----------KDV 441

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT--IGRAARNV 682
           + D+  G+  +  G  +  +G + P+  L  I D D  G  R +T       IG+     
Sbjct: 442 VDDIEFGEVAITFGNQM--KGFECPDLKLCVISDKDFFGKSRKRTKRTNKKGIGKIKSFA 499

Query: 683 NSKVILYADTITK 695
             K   Y      
Sbjct: 500 ELKPGDYVVHTNH 512



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+        + + D I     +  
Sbjct: 775 VLTLTATPIPRTLHMSLTGIRDISVIETPPEERYPVQTYVVEFNDQLIEDAIARELDRDG 834

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++  YL +     +    H ++   E  +++ D    ++D+LV   +
Sbjct: 835 QVYFVYNRVGSIKEMAAYLAKMFPDSKVGIAHGQMPERELEKVMYDFMKKEYDILVCTTI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDI     + I D+DK G L     L   +GR  R   + +    D +       +
Sbjct: 895 IETGLDIQNANTMIIYDSDKFG-LSQLYQLRGRVGRTNRMAYAYLTYKKDKV-------L 946

Query: 702 DETTRRREKQLE 713
            E   +R K ++
Sbjct: 947 TEVAEKRLKAIK 958


>gi|323701604|ref|ZP_08113276.1| transcription-repair coupling factor [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533377|gb|EGB23244.1| transcription-repair coupling factor [Desulfotomaculum nigrificans
           DSM 574]
          Length = 1169

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 100/546 (18%), Positives = 210/546 (38%), Gaps = 54/546 (9%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             LL+G+    + Q++ G+ GS +++  A +    +R  +V+AP +  AA L  +  +  
Sbjct: 15  QHLLQGLEKGFRQQMVFGLAGSQRSYLFAGL-AHTRRSVLVVAPGETEAAALADDLTSLL 73

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS- 276
           P  +V+ F             P       +  + + ++   R      L      +VV+ 
Sbjct: 74  PDLSVQLF-------------PVWQMLPYQVLAHSNEVLAQRLRVLEQLSAGEPLVVVTS 120

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
             + +  +   + +S+  + L +G  V+ +++   L+K  Y+R D+    G F   G  I
Sbjct: 121 PEALLRRLTPPDIFSRAKLSLSLGQRVDLEKMRQDLIKMGYERVDLVEGPGQFSSRGGII 180

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IFP        R+  F ++++ I  F     + +  ++ I I      V          
Sbjct: 181 DIFPMTAA-RPVRIEFFDDEVDSIRHFDVDNQRSLDKLKGISISPCRELVLTPAAWQRGK 239

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           +  + E K +L +L++ G +    +L  +    L+ +      + +E    +        
Sbjct: 240 ENYEAEYKNQLKKLQRSGSVDAVHQLSSQGAMLLDQIHGQIPFEGMEQLHSFFYP----- 294

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P TL +Y  E  LL VD+       +  + R        L   G  LP   ++    + 
Sbjct: 295 EPVTLLDYFAEKPLLLVDDPIRFKEVVDTILRERNETYTDLLAKGKVLPGQFNS----YL 350

Query: 517 EWNCL-----RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVED 570
           +W  L     R   I  S  P +            Q I+   +V+ P + + S     E 
Sbjct: 351 DWPKLLAPLERCQGIYCSFLPRN-----------PQYIKAQNVVNFPAKAMHSFLGHYEV 399

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + DEI    ++G  ++L V ++  A +L + L +  +   ++          ++  +++ 
Sbjct: 400 LADEIRHWRRRGYAVVLLVSSEERATNLLQLLKDAKVDAFHI---------KQLDNEVKE 450

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGF-LRSKTSLIQTIGRAARNVNSKVILY 689
           G  +V++ +  L  G ++    L  I D +  G   +++   ++   R     + K   Y
Sbjct: 451 G--NVVITVGQLANGFELISARLAVITDQEIFGQRKKARKHRVKADSRMEPLADLKAGDY 508

Query: 690 ADTITK 695
              +  
Sbjct: 509 VVHVNH 514



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 21/192 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVED-----VYDEINLA 578
            + ++ATP    L           +R T +++ P E R   +T V +     + + I   
Sbjct: 777 VLTLTATPIPRTLHMSLVG-----VRDTSVLETPPEERFPVQTYVLEEDPTLIREAIRRE 831

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVL 636
             +G ++          + L  +L +     R    H ++K  E  +I+ +   G +DVL
Sbjct: 832 LNRGGQVYFVHNRVMDLDRLAGWLQDLVPEARIAVAHGQMKEDELEQIMLEFMDGAYDVL 891

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  GLDI     + + DAD  G  +    L Q  GR  R        +     K 
Sbjct: 892 VCTTIVETGLDISNVNTLIVKDADHFGLSQ----LYQLRGRVGRTNRLAYAYFLFRRDK- 946

Query: 697 IQLAIDETTRRR 708
               + E + RR
Sbjct: 947 ---VLTEVSERR 955



 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 12/105 (11%)

Query: 119 NGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVT 177
            G  ++P   W           F+ Q  Y  + DQ  AIA++ + +   R   +LL G  
Sbjct: 605 KGHAFSPDTPWQAE--------FEAQFPYEETPDQLRAIAEVKRDMEKERPMDRLLCGDV 656

Query: 178 GSGKT-FTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPH 219
           G GKT   +    +A+   +   V+ P  ILA Q Y+ F+  F +
Sbjct: 657 GYGKTEVALRAAFKAVMDNKQVAVLVPTTILAQQHYNTFRERFAN 701


>gi|187932793|ref|YP_001884406.1| transcription-repair coupling factor [Clostridium botulinum B str.
           Eklund 17B]
 gi|187720946|gb|ACD22167.1| transcription-repair coupling factor [Clostridium botulinum B str.
           Eklund 17B]
          Length = 1167

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/516 (19%), Positives = 217/516 (42%), Gaps = 62/516 (12%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + ++LK I+ +     + G++ SG+++ +  + E +++  +++  + + A  LY +    
Sbjct: 16  LQKILKSINEKTYPVGIYGLSDSGRSYMIDGIFENIEKSIVIVTQSDMEAKNLYEDL--I 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVV 275
              N V YF             P  +T      +I+  +   R +    +L  +N  IV+
Sbjct: 74  LYTNEVYYF-------------PVKETVFYNIDAISGDLRWARLNVINEILNNKNKKIVI 120

Query: 276 SSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +SV C     +    + +  + +K G  +   E+ S L++  Y+R +I   +G F + G 
Sbjct: 121 TSVDCFMATYAPHKLFVKYSMTIKQGAEINFNEMSSKLIESGYERVEIVESKGQFSIRGG 180

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++IFP       +RV +FG+++E I  F   + + I  V++ K++     +  + ++  
Sbjct: 181 ILDIFP-TCSTYPYRVELFGDEVESIRTFNSESQRSIDKVKSFKVFPAKEIIVSQESMTK 239

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A + I  E K               ++LE+ +  ++E LE   + ++I++Y  Y      
Sbjct: 240 AKESILNEFKE---ISLDNKEKERIEKLEKVVKSNIESLEENLTFETIDSYLPYFY---- 292

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC-----MD 509
            E   + F+Y  ++ L  +++      ++   Y        +  E G  LP        +
Sbjct: 293 -EEVESFFDYF-KNYLFIMNDVKRCKGKLESSYLEFAENFTSFLERGDILPGQEKLLIKE 350

Query: 510 NRPL-RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQ 567
           +  L +FEE N L   T+  +                E+ +RP T +      + + + Q
Sbjct: 351 HDTLDKFEESNILFFETLNNT----------------EKFLRPFTNIELKQTTLSNYQGQ 394

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           ++ + ++I     +G + ++   TK   E L + L +R +   Y           + I +
Sbjct: 395 LDILIEDILDKKSKGYKTVILSGTKVRGERLVDTLRDRGVESSY----------KDNIEE 444

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           ++ G+  V++      +G + PE  +  I D +  G
Sbjct: 445 IQFGE--VIITCGNQLKGFEYPEYKVCVISDKEVFG 478



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 66/178 (37%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     G     +I        PV+        + + D I     +G 
Sbjct: 777 VLTLSATPIPRTLHMSLTGARDISVIETPPEERYPVQTYVVEQNDQLIRDAILREIGRGG 836

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++           ++  Y+ E     +V   H ++   +  + +      + +VLV   +
Sbjct: 837 QVYFVYNRVEDINEMARYVQELVPESKVSVTHGQMTERQLEKEMISFMDQESNVLVCTTI 896

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DIP    + + ++DK G L     L   +GR+ R   + ++   D +   +  
Sbjct: 897 IETGIDIPNVNTIIVYNSDKMG-LSQLYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAE 953


>gi|118444361|ref|YP_877116.1| transcription-repair coupling factor [Clostridium novyi NT]
 gi|118134817|gb|ABK61861.1| transcription-repair coupling factor [Clostridium novyi NT]
          Length = 1170

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 106/517 (20%), Positives = 223/517 (43%), Gaps = 47/517 (9%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207
            P  D        +K I   +    + G++ SG+ + +  + E   +   +   + + A 
Sbjct: 8   EPLLDNIQ-FQNTIKSIEDGKYPIEITGLSESGRAYFINGIYEQEDKSIFIFTNSDVEAK 66

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
            LY +   + P+  V YF             P  +       +I+  +   R    R +L
Sbjct: 67  NLYEDLSLYVPN--VYYF-------------PNKEVVFYNVYAISGDLRWERLKVIREML 111

Query: 268 ERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
           ++   ++V+S+  +     S E Y +  +++ +GD ++ +EL   L++  Y+R  I   +
Sbjct: 112 KKGKKVIVASIETLASTYISPELYKKYTLKVSVGDVIDIEELSEKLIQGGYQRTSIVEGK 171

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           G F + G  I+++ S +  V +R+ +FG++++ I  F   + + I   ++I+I+     +
Sbjct: 172 GEFSIRGGIIDVY-SPISSVPYRIELFGDEVDSIRSFNTESQRSIEKSKSIEIFPAKEMI 230

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
             +  ++     IKE+L+    +L  +  LL    LE+    +LE L+ T S ++I++++
Sbjct: 231 LTKENIDMGYNSIKEDLQKAKEKLVDDRELL--DNLEKNTISNLESLKETWSFENIDSFT 288

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS 506
            Y       E   TL +Y+  DSL+FV +   ++ ++  +Y         L E G  L  
Sbjct: 289 PYFY-----ENTATLLDYMN-DSLVFVTDVQRSLGKLDTVYFEFIENYKQLLERGTILSK 342

Query: 507 CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
            ++    + +    ++ + I V+    S E++  +    E              + S   
Sbjct: 343 QLELLVSKEDILEKIQKSNI-VTLNIISKEMDVLKSKHKESF--------NQTILNSFGG 393

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +++ + +EIN    QG +IL+   T+   E L + L + +I   Y           +++ 
Sbjct: 394 KLDFLIEEINSKKSQGYKILILSGTRPRGERLVDALRDYDIESAY----------KDVVD 443

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           ++  G+  V++      +G + PE  L  I D D  G
Sbjct: 444 NIEFGE--VVITFGNQSKGFEYPELKLCVISDKDFFG 478



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+        + + D I     +G 
Sbjct: 775 VLTLTATPIPRTLHMSLTGIRDISVIETPPEERYPVQTYVVEFNDQLILDAITREMDRGG 834

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++  YL +     +    H ++   E  +++ D    ++D+LV   +
Sbjct: 835 QVYFVYNRVGSIKEMAAYLAKLVPDAKVGIAHGQMPERELEKVMFDFMKKEYDILVCTTI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDI     + I DADK G L     L   +GR  R   + +    D +       +
Sbjct: 895 IETGLDIQNANTMIIYDADKFG-LSQLYQLRGRVGRTNRMAYAYLTYKKDKV-------L 946

Query: 702 DETTRRREKQLE 713
            E   +R K ++
Sbjct: 947 TEVAEKRLKAIK 958


>gi|256003231|ref|ZP_05428223.1| transcription-repair coupling factor [Clostridium thermocellum DSM
           2360]
 gi|255992922|gb|EEU03012.1| transcription-repair coupling factor [Clostridium thermocellum DSM
           2360]
 gi|316939280|gb|ADU73314.1| transcription-repair coupling factor [Clostridium thermocellum DSM
           1313]
          Length = 1178

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 122/634 (19%), Positives = 254/634 (40%), Gaps = 65/634 (10%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            +L+ I        + G + S K      +   +    I +A N++ A +++ +   FF 
Sbjct: 23  NVLENIKRGI-PTTVTGPSESQKVHIACALCGHLGLKGIYIAYNEMQARKMFEDVSFFFG 81

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
            +AV +         P   +   D   +   SI E     R +A   ++  +   +V+S 
Sbjct: 82  KDAVFF---------PSKEIMLHDVEAKSYDSIYE-----RINALYRIVNDDYGFIVTSA 127

Query: 279 SCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             +   +   + + + IV + +GD ++       LV   Y+R      +  F V G  ++
Sbjct: 128 EALCQKLIDRKLFKESIVNVALGDRIDLGLFTQKLVSIGYERVTTVEGKSQFAVRGGIVD 187

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP +  D A R+ +F ++++ +  F  +T + + N+E + I      + P    ++ ++
Sbjct: 188 IFPVNA-DTAVRIELFDDEVDSVRSFDTMTQRSVENLEAVTILPARELIYPPGLRDSIVE 246

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            I  +LK+++ ++E +      Q+LE +I  D+E          ++ Y  Y+      E 
Sbjct: 247 KILNDLKIQIKKMEGKNNKSGIQKLEAKINSDIERFSQEYYFAGMDRYIPYII-----EK 301

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           P  + +YI  + L+FVDE      +I  +         +  E G  L    D        
Sbjct: 302 PSAVIDYIDSEILVFVDEPKRFEQRIENLITESNEMCKSFMENGQLLAGSFDIFFDCNYL 361

Query: 518 WNCLR--PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           W+ ++    T+  +  P     E  +  IV +++             S +  +E + ++I
Sbjct: 362 WDKVKKCKNTLYFTTLPSDDGQEGKRENIVSKLL------------NSYQGHLEILEEDI 409

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   + G R+++   TK   E L E L  ++I   Y+          E  RD++ G+  V
Sbjct: 410 SHWKKNGARVVILSGTKSRGEMLAETLRTKDIEAVYL---------EEPHRDIQPGE--V 458

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-------NVNSKVIL 688
           ++   +L  G + P  G V +  + KE F + K +      +  +       NV   V+ 
Sbjct: 459 VITHGVLNRGFEYPGIGFVVV--SGKELFGQEKKTRRHKSAKGKKISVFTDLNVGDYVVH 516

Query: 689 YADTITKS--IQLAIDETTRRREKQLEH-NKKHNINPQS----VKEKIMEVIDPILLEDA 741
           Y   I K   I+  + E  ++   ++++ +  +   P +    +++ I        L   
Sbjct: 517 YVHGIGKYIGIEQLVVENVKKDYLKIQYSDGDYLYVPTNQLDLIQKYIGSEGKTPKLSKL 576

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSL--RKQMHL 773
             T+ +    +   S K+    L +L  +++M  
Sbjct: 577 GGTDWAKTRARTKESLKELAQELINLYAQREMAE 610



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 72/191 (37%), Gaps = 18/191 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV-----EDVYDEINLA 578
            + ++ATP    L           IR    ++ P E R   +T V     E V D IN  
Sbjct: 782 VLTLTATPIPRTLHMSLVG-----IRDISTIEEPPEERYPVQTYVMEYNDEVVRDAINRE 836

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVL 636
             +G ++       R        + +     R    H ++   E   I+     G++D+L
Sbjct: 837 MSRGGQVFYLYNRVRAINQKAAEIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDIL 896

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  GLD+P    + + DADK G  +    L   +GR+ R   + +    D +   
Sbjct: 897 VCTTIIESGLDMPNVNTIIVEDADKMGLAQ-LYQLRGRVGRSNRLAYAYITYKKDKVLSE 955

Query: 697 IQL----AIDE 703
           I      AI E
Sbjct: 956 IAEKRLQAIKE 966


>gi|281418467|ref|ZP_06249486.1| transcription-repair coupling factor [Clostridium thermocellum
           JW20]
 gi|281407551|gb|EFB37810.1| transcription-repair coupling factor [Clostridium thermocellum
           JW20]
          Length = 1178

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 122/634 (19%), Positives = 254/634 (40%), Gaps = 65/634 (10%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            +L+ I        + G + S K      +   +    I +A N++ A +++ +   FF 
Sbjct: 23  NVLENIKRGI-PTTVTGPSESQKVHIACALCGHLGLKGIYIAYNEMQARKMFEDVSFFFG 81

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
            +AV +         P   +   D   +   SI E     R +A   ++  +   +V+S 
Sbjct: 82  KDAVFF---------PSKEIMLHDVEAKSYDSIYE-----RINALYRIVNDDYGFIVTSA 127

Query: 279 SCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             +   +   + + + IV + +GD ++       LV   Y+R      +  F V G  ++
Sbjct: 128 EALCQKLIDRKLFKESIVNVALGDRIDLGLFTQKLVSIGYERVTTVEGKSQFAVRGGIVD 187

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP +  D A R+ +F ++++ +  F  +T + + N+E + I      + P    ++ ++
Sbjct: 188 IFPVNA-DTAVRIELFDDEVDSVRSFDTMTQRSVENLEAVTILPARELIYPPGLRDSIVE 246

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            I  +LK+++ ++E +      Q+LE +I  D+E          ++ Y  Y+      E 
Sbjct: 247 KILNDLKIQIKKMEGKNNKSGIQKLEAKINSDIERFSQEYYFAGMDRYIPYII-----EK 301

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           P  + +YI  + L+FVDE      +I  +         +  E G  L    D        
Sbjct: 302 PSAVIDYIDSEILVFVDEPKRFEQRIENLITESNEMCKSFMENGQLLAGSFDIFFDCNYL 361

Query: 518 WNCLR--PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           W+ ++    T+  +  P     E  +  IV +++             S +  +E + ++I
Sbjct: 362 WDKVKKCKNTLYFTTLPSDDGQEGKRENIVSKLL------------NSYQGHLEILEEDI 409

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   + G R+++   TK   E L E L  ++I   Y+          E  RD++ G+  V
Sbjct: 410 SHWKKNGARVVILSGTKSRGEMLAETLRTKDIEAVYL---------EEPHRDIQPGE--V 458

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-------NVNSKVIL 688
           ++   +L  G + P  G V +  + KE F + K +      +  +       NV   V+ 
Sbjct: 459 VITHGVLNRGFEYPGIGFVVV--SGKELFGQEKKTRRHKSAKGKKISVFTDLNVGDYVVH 516

Query: 689 YADTITKS--IQLAIDETTRRREKQLEH-NKKHNINPQS----VKEKIMEVIDPILLEDA 741
           Y   I K   I+  + E  ++   ++++ +  +   P +    +++ I        L   
Sbjct: 517 YVHGIGKYIGIEQLVVENVKKDYLKIQYSDGDYLYVPTNQLDLIQKYIGSEGKTPKLSKL 576

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSL--RKQMHL 773
             T+ +    +   S K+    L +L  +++M  
Sbjct: 577 GGTDWAKTRARTKESLKELAQELINLYAQREMVE 610



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 72/191 (37%), Gaps = 18/191 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV-----EDVYDEINLA 578
            + ++ATP    L           IR    ++ P E R   +T V     E V D IN  
Sbjct: 782 VLTLTATPIPRTLHMSLVG-----IRDISTIEEPPEERYPVQTYVMEYNDEVVRDAINRE 836

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVL 636
             +G ++       R        + +     R    H ++   E   I+     G++D+L
Sbjct: 837 MSRGGQVFYLYNRVRAINQKAAEIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDIL 896

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  GLD+P    + + DADK G  +    L   +GR+ R   + +    D +   
Sbjct: 897 VCTTIIESGLDMPNVNTIIVEDADKMGLAQ-LYQLRGRVGRSNRLAYAYITYKKDKVLSE 955

Query: 697 IQL----AIDE 703
           I      AI E
Sbjct: 956 IAEKRLQAIKE 966


>gi|315283616|ref|ZP_07871758.1| UvrABC system protein B [Listeria marthii FSL S4-120]
 gi|313612740|gb|EFR86740.1| UvrABC system protein B [Listeria marthii FSL S4-120]
          Length = 228

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 120/229 (52%), Positives = 167/229 (72%), Gaps = 2/229 (0%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           ++D+ DEIN   ++  R+L+T LTK+M+EDLT YL E  ++V+Y+HSEVKTLERIEIIRD
Sbjct: 1   IDDLMDEINDRVEKNERVLITTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLERIEIIRD 60

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LRLG +DV+VGINLLREG+D+PE  LVAILDADKEGFLRS+ SLIQT+GRAARN N +VI
Sbjct: 61  LRLGVYDVIVGINLLREGIDLPEVSLVAILDADKEGFLRSERSLIQTMGRAARNENGRVI 120

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           +YAD +T S++ +I ET RRR+ Q+E+N+KH I P+++K++I  +I      D       
Sbjct: 121 MYADKMTDSMRNSIGETERRRKIQIEYNEKHGITPKTIKKEIRGIIAATSAADEREAVKQ 180

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
            D  +  +SKK+    ++ +  +M  AA  L+FE AA +RD +  +K+ 
Sbjct: 181 HDLSK--MSKKERDVFIEGMEHEMKEAAKALDFERAAELRDALLEIKAE 227


>gi|254520523|ref|ZP_05132579.1| transcription-repair coupling factor [Clostridium sp. 7_2_43FAA]
 gi|226914272|gb|EEH99473.1| transcription-repair coupling factor [Clostridium sp. 7_2_43FAA]
          Length = 1169

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 107/543 (19%), Positives = 226/543 (41%), Gaps = 58/543 (10%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             +++  I+++     + G++ SGK++ + ++ E++  P I++  + + A  +Y +    
Sbjct: 16  FNEIITSINNKRYPININGLSDSGKSYGVFEIYESIDSPMIILTHSDMEAKNIYEDLS-- 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           F  N + YF             P  +       +I+  +   R    + +L+  + I+V+
Sbjct: 74  FYTNDIYYF-------------PAKEVVFYNIDAISGDLRWARLKVIKEILDNKNKIIVT 120

Query: 277 SVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           S+  +  + + +  + +   +L + D V  K+L   L++  Y+R +    +G F + G  
Sbjct: 121 SIDTLTSVYTPKELFREYTFKLSVDDDVNFKDLSKKLLESGYERVEAVEGKGEFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +++FP  +    +R+ +FG+ IE I  F   + + I  V+ I+I+     +     LN  
Sbjct: 181 LDVFPP-IATYPYRIELFGDSIESIRTFNKESQRSIEKVDNIEIFPAKEIILNEEALNRG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
            + I +E +   I+ + +G     Q+LE  I+ ++E L  T + +++++Y  Y       
Sbjct: 240 KEAILKEFQE--IKSKAKGNDERIQKLESIISANIESLTETLTFETLDSYLPYFY----- 292

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD---NRP 512
           +   + F Y+ +D +  +D+      ++   Y           + G  LPS      N+ 
Sbjct: 293 DKTDSFFSYV-KDYMYVIDDVKKCEGKLESCYFEFSENYEAFLQRGGILPSQSKLLLNKD 351

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDV 571
              E+    +  T+ V A             I  +I+ P          + S + Q++ +
Sbjct: 352 DLIEKLESQKSITLDVFA-------------INSKILNPIERYSFNASTLNSYQGQLDLL 398

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            D+I     +G + ++   T+   E L   L +R I   Y           E I+ +  G
Sbjct: 399 IDDIKEKKSKGYKTIILSGTRTRGERLVNTLRDRKIESSY----------REDIKSIEFG 448

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEG----FLRSKTSLIQTIGRAARNVNSKVI 687
           +  V++    L +G + P+  L  I D D  G     +  K S  + IG+       K+ 
Sbjct: 449 E--VVITFGNLLKGFEYPDLKLCVISDKDVFGEAKRKISKKASSRKGIGKIKSFAELKLG 506

Query: 688 LYA 690
            Y 
Sbjct: 507 DYV 509



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L        +  +I        P++        + V D I     +  
Sbjct: 777 VLTLSATPIPRTLHMSLTGARDISVIETPPEERYPIQTYVVEQNDQLVRDAILREVNRSG 836

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E + +Y+ E     +   +H ++   +  + +       +D+LV   +
Sbjct: 837 QVYYVYNRVESIEGMAKYIRELVPECKVGIIHGQMTERQLEKEMVSFMNKDYDILVCTTI 896

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DIP    + I D+DK G L     L   +GR+ R   +  +   D I   +  
Sbjct: 897 IETGIDIPNVNTMIIHDSDKMG-LSQLYQLRGRVGRSNRIAYAYFMYTKDKILTEVAE 953


>gi|125975114|ref|YP_001039024.1| transcription-repair coupling factor [Clostridium thermocellum ATCC
           27405]
 gi|125715339|gb|ABN53831.1| transcription-repair coupling factor [Clostridium thermocellum ATCC
           27405]
          Length = 1178

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 122/634 (19%), Positives = 254/634 (40%), Gaps = 65/634 (10%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            +L+ I        + G + S K      +   +    I +A N++ A +++ +   FF 
Sbjct: 23  NVLENIKRGI-PTTVTGPSESQKVHIACALCGHLGLKGIYIAYNEMQARKMFEDVSFFFG 81

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
            +AV +         P   +   D   +   SI E     R +A   ++  +   +V+S 
Sbjct: 82  KDAVFF---------PSKEIMLHDVEAKSYDSIYE-----RINALYRIVNDDYGFIVTSA 127

Query: 279 SCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             +   +   + + + IV + +GD ++       LV   Y+R      +  F V G  ++
Sbjct: 128 EALCQKLIDRKLFKESIVNVALGDRIDLGLFTQKLVSIGYERVTTVEGKSQFAVRGGIVD 187

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP +  D A R+ +F ++++ +  F  +T + + N+E + I      + P    ++ M+
Sbjct: 188 IFPVNA-DTAVRIELFDDEVDSVRSFDTMTQRSVENLEAVTILPARELIYPPGLRDSIME 246

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            I  +LK+++ ++E +      Q+LE +I  D+E          ++ Y  Y+      E 
Sbjct: 247 KILNDLKIQIKKMEGKNNKSGIQKLEAKINSDIERFSQEYYFAGMDRYIPYII-----EK 301

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           P  + +YI  + L+FVDE      +I  +         +  E G  L    D        
Sbjct: 302 PSAVIDYIDSEILVFVDEPKRFEQRIENLITESNEMCKSFMENGQLLAGSFDIFFDCNYL 361

Query: 518 WNCLR--PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           W+ ++    T+  +  P     E+ +  IV +++             S +  +E + ++I
Sbjct: 362 WDKVKKCKNTLYFTTLPSDDGQEEKRENIVSKLL------------NSYQGHLEILEEDI 409

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   +   R+++   TK   E L E L  ++I   Y+          E  RD++ G+  V
Sbjct: 410 SHWKKNRARVVILSGTKSRGEMLAETLRTKDIEAVYL---------EEPHRDIQPGE--V 458

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-------NVNSKVIL 688
           ++   +L  G + P  G V +  + KE F + K +      +  +       NV   V+ 
Sbjct: 459 VITHGVLNRGFEYPGIGFVVV--SGKELFGQEKKTRRHKSAKGKKISVFTDLNVGDYVVH 516

Query: 689 YADTITKS--IQLAIDETTRRREKQLEHNK-KHNINPQS----VKEKIMEVIDPILLEDA 741
           Y   I K   I+  + E  ++   +++++   +   P +    +++ I        L   
Sbjct: 517 YVHGIGKYIGIEQLVVENVKKDYLKIQYSDGDYLYVPTNQLDLIQKYIGSEGKTPKLSKL 576

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSL--RKQMHL 773
             T+ +    +   S K+    L +L  +++M  
Sbjct: 577 GGTDWAKTRARTKESLKELAQELINLYAQREMAE 610



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 72/191 (37%), Gaps = 18/191 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV-----EDVYDEINLA 578
            + ++ATP    L           IR    ++ P E R   +T V     E V D IN  
Sbjct: 782 VLTLTATPIPRTLHMSLVG-----IRDISTIEEPPEERYPVQTYVMEYNDEVVRDAINRE 836

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVL 636
             +G ++       R        + +     R    H ++   E   I+     G++D+L
Sbjct: 837 MSRGGQVFYLYNRVRAINQKAAEIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDIL 896

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  GLD+P    + + DADK G  +    L   +GR+ R   + +    D +   
Sbjct: 897 VCTTIIESGLDMPNVNTIIVEDADKMGLAQ-LYQLRGRVGRSNRLAYAYITYKKDKVLSE 955

Query: 697 IQL----AIDE 703
           I      AI E
Sbjct: 956 IAEKRLQAIKE 966


>gi|28209962|ref|NP_780906.1| transcription-repair coupling factor [Clostridium tetani E88]
 gi|28202397|gb|AAO34843.1| transcription-repair coupling factor [Clostridium tetani E88]
          Length = 1030

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 104/560 (18%), Positives = 219/560 (39%), Gaps = 63/560 (11%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207
            P  D       +   I S E    ++G+  S K++ +  V + + +P +++  + I A 
Sbjct: 12  KPLKD-SKEFKDIKDNIKSEEYPINIIGLEDSSKSYLIKGVYDEIDKPLLILTHSDIEAK 70

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
            +Y +   FF    V YF             P  +       +I+  +   R    + +L
Sbjct: 71  NIYEDL--FFYEANVHYF-------------PSKEVVFYNVDAISGDLRWERLKIIKHIL 115

Query: 268 ERNDCIVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
           E    I+V+S+  I  I   +  Y +   +  IGD V+ K+L   L+K  Y R D+   +
Sbjct: 116 EPGKKIIVTSIESIAPICIPLNLYKEYFFKFSIGDVVDYKDLSEKLLKSGYDRVDLVYNK 175

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
             F + G  ++IFP    +  +R+  F N+I+ I  F   + + I  V+ I+++     +
Sbjct: 176 AQFSIRGGILDIFPPTSSE-PYRIEFFDNEIDSIRNFNTESQRSIEKVDCIEVFPAKEII 234

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
             +  +++A + I  +LK     L+         +L+  I  ++E L+ T   ++I++Y 
Sbjct: 235 LNKENIDSACEKIMMDLKKVRNNLDSLNNKESFDKLKNTIDKNIESLKETWGFETIDSYL 294

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS 506
            YL      +   +   Y  +D  + VD+      ++  +Y   +    +  + G  LP 
Sbjct: 295 PYLY-----DTTTSFLNYF-KDCFVVVDDIQRCQGKLDSVYYEYYDSYDSFLKRGDILPR 348

Query: 507 CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS--- 563
             +    + + W                  LE+ + + +  + + T ++     +     
Sbjct: 349 QGELLIPKEDIWEA----------------LEESKVMTLSVLPKKTDVLKERQTVNFKEI 392

Query: 564 ----ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
                + Q++ + ++I    ++  +I++   T+   E L + L +R I   Y        
Sbjct: 393 TSQNYQGQIDLLIEDIEKRKEEKYKIVILAGTRARGERLVDTLRDRGIDSVY-------- 444

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK--TSLIQTIG- 676
              ++I  +  G+  +  G  +  +G + P+  L  I D +  G  + +    L    G 
Sbjct: 445 --RDVIDKILPGEVVITFGSQI--KGYEYPDFKLCIISDKEVFGEAKRRKNKKLTNKKGF 500

Query: 677 -RAARNVNSKVILYADTITK 695
            R     + K   Y   +  
Sbjct: 501 SRIKSFTDLKPGDYIVHVNH 520



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      + +  II        P++        + + D I     +G 
Sbjct: 783 VLTLTATPIPRTLHMSLVGVRDISIIETPPEDRYPIQTYVVEYNDQLIRDAILRELNRGG 842

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          +++  ++ +     +    H ++K  E  +++ D    + D+LV   +
Sbjct: 843 QIYFVYNRVENIKEIATHVSKLVPEAKVGIAHGQMKERELEKVVMDFMNKEHDILVATTI 902

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ--- 698
           +  G+DI     + I D+DK G L     L   +GR++R     +    D I   +    
Sbjct: 903 IETGMDIQNVNTMIIYDSDKMG-LSQLYQLRGRVGRSSRMAYCYLTYKKDKILTEVAEKR 961

Query: 699 -LAIDE 703
             AI E
Sbjct: 962 LKAIKE 967


>gi|188589474|ref|YP_001919598.1| transcription-repair coupling factor [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499755|gb|ACD52891.1| transcription-repair coupling factor [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 1167

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 99/516 (19%), Positives = 213/516 (41%), Gaps = 62/516 (12%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + ++LK I+ +     + G++ SGK++ +  + E +++  +++  + + A  LY +    
Sbjct: 16  LQKVLKSINEKTYPVGIYGLSDSGKSYMIDGIFENIEKSIVIVTQSDMEAKNLYEDL--I 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              N V YF             P  +T      +I+  +   R +    +L   +  +V 
Sbjct: 74  LYTNEVYYF-------------PVKETVFYNIDAISGDLRWARLNVINEILNNKNKKIVI 120

Query: 277 SV--SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +   S +      + +++  + +K G  V   E+   L++  Y+R +I   +G F V G 
Sbjct: 121 TSIDSFMATYAPHKLFAKYSMTIKQGTEVNFNEISLKLIESGYERVEIVESKGQFSVRGG 180

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++IFP       +RV +FG+++E I  F   + + I  V++ K++     +  + ++  
Sbjct: 181 ILDIFP-TCSTYPYRVELFGDEVESIRTFNSESQRSIDKVKSFKVFPAKEIIVSQESMTK 239

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A + I  E K               ++LE+ +  ++E LE   + ++I++Y  Y      
Sbjct: 240 AKELILNEFKE---ISLNNKEKERIEKLEKVVKSNIESLEENLTFETIDSYLPYFY---- 292

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC-----MD 509
            +   + F+Y  +D L  +++      ++   Y        +  E G  LP        +
Sbjct: 293 -DEIESFFDYF-KDYLFIMNDVKRCKGKLESSYLEFAENFTSFLERGDILPGQEKLLINE 350

Query: 510 NRPL-RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQ 567
           +  L +FEE N L   T+  +                E+ +RP T +      + + + Q
Sbjct: 351 HDTLDKFEESNILFFETLNNT----------------EKFLRPFTSIELKQTTLSNYQGQ 394

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           ++ + ++I     +G + ++   TK   E L + L +R +   Y           + I  
Sbjct: 395 LDILIEDILDKKSKGYKTVILSGTKVRGERLVDTLRDRGVESSY----------RDKIEQ 444

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           ++ G+  +  G  L  +G + PE  +  I D +  G
Sbjct: 445 IQFGEVVITCGNQL--KGFEYPEYKVCVISDKEVFG 478



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 66/178 (37%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L        +  +I        PV+        + + D I     +G 
Sbjct: 777 VLTLSATPIPRTLHMSLTGARDISVIETAPEERYPVQTYVVEQNDQLIRDAILREIGRGG 836

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++           ++  Y+ E     +V   H ++   +  + +      + +VLV   +
Sbjct: 837 QVYFVYNRVEDINEMARYVQELVPESKVSVTHGQMTERQLEKEMLSFMDQESNVLVCTTI 896

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DIP    + + ++DK G L     L   +GR+ R   + ++   D +   +  
Sbjct: 897 IETGIDIPNVNTIIVYNSDKMG-LSQLYQLRGRVGRSNRIAYAYLLYAKDKVLTEVAE 953


>gi|251779351|ref|ZP_04822271.1| transcription-repair coupling factor [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243083666|gb|EES49556.1| transcription-repair coupling factor [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 1167

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 98/516 (18%), Positives = 212/516 (41%), Gaps = 62/516 (12%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + ++LK I+ +     + G++ SGK++ +  + E +++  +++  + + A  LY +    
Sbjct: 16  LQKVLKSINEKTYPVGIYGLSDSGKSYMIDGIFENIEKSIVIVTQSDMEAKNLYEDL--I 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              N V YF             P  +T      +I+  +   R +    +L   +  +V 
Sbjct: 74  LYTNEVYYF-------------PVKETVFYNIDAISGDLRWARLNVINEILNNKNKKIVI 120

Query: 277 SV--SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +   S +      + +++  + +K G  V   E+   L++  Y+R +I   +G F V G 
Sbjct: 121 TSIDSFMATYAPHKLFAKYSMTIKQGTEVNFNEISLKLIESGYERVEIVESKGQFSVRGG 180

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++IFP       +RV +FG+++E I  F   + + I  V++ K++     +  + ++  
Sbjct: 181 ILDIFP-TCSTYPYRVELFGDEVESIRTFNSESQRSIDKVKSFKVFPAKEIIVSQESMTK 239

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A + I  E K               ++LE+ +  ++E LE   + ++I++Y  Y      
Sbjct: 240 AKELILNEFKE---ISLNNKEKERIEKLEKVVKSNIESLEENLTFETIDSYLPYFY---- 292

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC-----MD 509
            +   + F+Y  +D L  +++      ++   Y        +  E G  LP        +
Sbjct: 293 -DEIESFFDYF-KDYLFIMNDVKRCKGKLESSYLEFAENFTSFLERGDILPGQKKLLINE 350

Query: 510 NRPL-RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQ 567
           +  L +FEE   L   T+  +                E+ +RP T +      + + + Q
Sbjct: 351 HDTLDKFEESKILFFETLNNT----------------EKFLRPFTSIELKQTTLSNYQGQ 394

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           ++ + ++I     +G + ++   TK   E L + L +R +   Y           + I  
Sbjct: 395 LDILIEDILDKKSKGYKTVILSGTKVRGERLVDTLRDRGVESSY----------RDKIEQ 444

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           ++ G+  +  G  L  +G + PE  +  I D +  G
Sbjct: 445 IQFGEVVITCGNQL--KGFEYPEYKVCVISDKEVFG 478



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 66/178 (37%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L        +  +I        PV+        + + D I     +G 
Sbjct: 777 VLTLSATPIPRTLHMSLTGARDISVIETAPEERYPVQTYVVEQNDQLIRDAILREIGRGG 836

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++           ++  Y+ E     +V   H ++   +  + +      + +VLV   +
Sbjct: 837 QVYFVYNRVEDINEMARYVQELVPESKVSVTHGQMTERQLEKEMLSFMDQESNVLVCTTI 896

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DIP    + + ++DK G L     L   +GR+ R   + ++   D +   +  
Sbjct: 897 IETGIDIPNVNTIIVYNSDKMG-LSQLYQLRGRVGRSNRIAYAYLLYAKDKVLTEVAE 953


>gi|309800512|ref|ZP_07694664.1| UvrABC system protein B [Streptococcus infantis SK1302]
 gi|308115860|gb|EFO53384.1| UvrABC system protein B [Streptococcus infantis SK1302]
          Length = 226

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 122/225 (54%), Positives = 162/225 (72%), Gaps = 3/225 (1%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
              EIN   ++  R  +T LTK+MAEDLT+Y  E  I+V+YMHS++KTLER EIIRDLRL
Sbjct: 3   FLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLERTEIIRDLRL 62

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G FDVLVGINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAARN    VI+YA
Sbjct: 63  GVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYA 122

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
           DT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +          + 
Sbjct: 123 DTMTQSMQKAIDETARRRQIQMAYNEEHGIVPQTIKKEIRDLIS---VTKTVAKEEDKEV 179

Query: 751 QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
              SL+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 180 DINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 224


>gi|303239799|ref|ZP_07326323.1| transcription-repair coupling factor [Acetivibrio cellulolyticus
           CD2]
 gi|302592736|gb|EFL62460.1| transcription-repair coupling factor [Acetivibrio cellulolyticus
           CD2]
          Length = 1177

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 112/631 (17%), Positives = 235/631 (37%), Gaps = 56/631 (8%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           L  I   E    + G + S K      +   +    I++A N++ A ++Y +   +F   
Sbjct: 24  LDNIKRGELPTSITGPSESQKAHIAYAICGHLNSKGIIVAYNELQARKIYDDLV-YFFEK 82

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
            V  F S          V   D   +   S+ E     R  A   +++ +   +V+S   
Sbjct: 83  DVILFSSK--------EVMLHDIEAKSYDSVYE-----RIVALDRIVKHDYRFIVTSAEA 129

Query: 281 I-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
           + + +   E +    ++      ++   ++  LV   Y+R      +G F + G  I+IF
Sbjct: 130 LCHKLIRKELFLSSCLKFCYDKRIDLALIIQKLVSIGYERVTTVEGKGQFAIRGGIIDIF 189

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P +  D A+R+ +F ++I+ I  F  L+ + +  VE + I      +     L   +  I
Sbjct: 190 PVNY-DSAFRIELFDDEIDSIRTFDVLSQRSVEKVENVDILPAREIIYEPSDLERMISGI 248

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
           + +L     ++  + +     ++++RI++D++  +       ++ Y  Y+      E P 
Sbjct: 249 QNDLIAHKGKIGSKAKQDYLDKIDERISHDIDKFKEECYFPGMDKYIPYII-----ESPS 303

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519
            L +YI +D L+F DE      ++  +   +     +L E G  LP C D        W 
Sbjct: 304 LLTDYIDDDILVFFDEPKRFEQRVENILAENREMCKSLLEKGHLLPGCFDIYFEFDYIWG 363

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
            L+    +   T  S E+        ++    + L++      S +  +E + D+I    
Sbjct: 364 KLKTHKSIYFNTIMSDEILASGS---QKYNIASKLLN------SYQGNLELIVDDIKYWK 414

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +  R+L+   TK   E L + L  ++I   Y+      +               V++  
Sbjct: 415 GKNSRVLILAGTKSRGEMLADTLRTKDIESVYIDEVKDGIL-----------PGQVIITH 463

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-------NVNSKVILYADT 692
             L +G +    G V +   +  G  R          +  +       N+   V+  +  
Sbjct: 464 GSLNKGFEYLSMGFVVVSGKELFGQDRKLKKRGVNKSKGKKINVFTDLNIGDFVVHQSHG 523

Query: 693 ITKS--IQLAIDETTRRREKQLEHNKKHNI-NPQS----VKEKIMEVIDPILLEDAATTN 745
           I K   I+  + E  ++   ++++     +  P +    +++ I        L     ++
Sbjct: 524 IGKYIGIEQLVVENIKKDYLKIQYQDDAFLYVPTNQLDIIQKYIGSEGKSPKLSKLGGSD 583

Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
                 +   S K+    L  L   M  A++
Sbjct: 584 WIKTKTKAKESLKELAEELIKLYA-MREASE 613



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 20/192 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +     + + DPP E    +T V     E + + IN   
Sbjct: 785 VLTLTATPIPRTLHMSMVGIKD----ISTIEDPPEERYPVQTYVMEHNNEVIKEAINREM 840

Query: 580 QQGLRILLTVLTKR----MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +  ++       R     A ++   + +  I V   H ++   E  +I+     G++DV
Sbjct: 841 ARNGQVFYLYNRVRSINVKAAEIKNMVPDARIAVA--HGQMNESELEDIMFRFINGEYDV 898

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  GLD+P    + + D+DK G  +    L   +GR+ R   + +    D +  
Sbjct: 899 LVCTVIIESGLDMPNVNTIIVEDSDKMGLAQ-LYQLRGRVGRSNRMAYAYITYKKDKVLS 957

Query: 696 SIQL----AIDE 703
            I      AI E
Sbjct: 958 EIAEKRLQAIKE 969



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 79/223 (35%), Gaps = 8/223 (3%)

Query: 81  QSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITF 140
             S   S K ++      +    +A   L +    L+K   +       +  + +     
Sbjct: 567 IGSEGKSPKLSKLGGSDWIKTKTKAKESLKELAEELIKLYAMREASEGHAFGSDTIWQKQ 626

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+ Q  Y  + DQ   I ++ + + S +   +LL G  G GKT   +  + +A+   +  
Sbjct: 627 FEEQFPYQETDDQLKCIEEIKRDMESNKPMDRLLCGDVGYGKTEVAIRAIFKAVMDGKQV 686

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
             + P  +LA Q Y+ FK       V   +      Q E      D    K   ++  I 
Sbjct: 687 AYLVPTTVLAQQQYNNFKERMKDFPVTVEMVSRFRTQTEQKHILKDV---KAGMVDVLIG 743

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
             R    + +  +N  ++V      +G+   E    M   + +
Sbjct: 744 THRLLQ-KDIAFKNLGLLVIDEEQRFGVMHKEKIKNMRANVDV 785


>gi|240144343|ref|ZP_04742944.1| transcription-repair coupling factor [Roseburia intestinalis L1-82]
 gi|257203687|gb|EEV01972.1| transcription-repair coupling factor [Roseburia intestinalis L1-82]
          Length = 1176

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 101/511 (19%), Positives = 192/511 (37%), Gaps = 44/511 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
                L  G+H    +  + G   + K   M  V        I++   +  A ++Y E++
Sbjct: 12  KEFETLSAGVHDLRGIAQISGCIDAAKPHIMYSV-NNGSGNRIIVTFQEQRAKEIYEEYR 70

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            F P                 AY P  D    +       +   R +A + L E + C +
Sbjct: 71  FFDPK---------------AAYYPAKDILFYQSDIRGNVLTAERINALKMLAEESSCTI 115

Query: 275 VSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           +++   +   +   E + Q + ++ +GD +  +EL   LV+  Y++       G F V G
Sbjct: 116 ITTFDSLMNPMPMPEKFIQEVKKVSVGDILNLEELTKHLVELGYEKNYQAETMGEFSVRG 175

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++IFP   ED  +R+  +G++++ I  F   + + I N+E I IY     V       
Sbjct: 176 GILDIFPL-TEDNPFRIEFWGDEVDSIRSFDAESQRSIENLEEISIYPACELVLTAEERQ 234

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             +K I +E      +L KE +  EA R +       E     G    ++ Y  Y     
Sbjct: 235 EGIKRILKEADKVSAKLRKEMKTEEAHRTKSAAAQIAEEAGELGISAGLDAYLSYFC--- 291

Query: 454 PGEPPPTLFEYIP-EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
             E   +L +Y   E++++FVDE   +I +                E G+ LP     R 
Sbjct: 292 --EERVSLLDYFNRENTVIFVDELARSIERGMVTETEFSESMKQRLEKGYILPGQ--MRE 347

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           L F     L     +   +  + +L+     I E+    +        +       E + 
Sbjct: 348 L-FSCKEILAKIETMACISLVALDLKNSHVDIKEKFTINSKT------VNPYNNSFELLV 400

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            ++    + G R++L   ++  A+ L E L    +   Y           +   +++ G+
Sbjct: 401 KDLTRYKKNGYRVILLSGSRTRAKRLAEDLMAEELNAFY---------SEDFDHEVKPGE 451

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEG 663
             ++ G   +++G + P    V I ++D  G
Sbjct: 452 --IMTGYGKIKKGYEYPLLKFVVISESDIFG 480



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 76/190 (40%), Gaps = 16/190 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +  +    L +PP++    +T V     E V + I+   
Sbjct: 777 VLTLTATPIPRTLHMSLIGIRDMSV----LEEPPMDRVPIQTYVMEYNEELVREAISREI 832

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G +        R   D+   + E      V Y H ++K  E   I+     G+ DVLV
Sbjct: 833 SRGGQAYYVYNRVREIADVAAKIAELVPEANVAYAHGQMKETELENIMYRFINGEIDVLV 892

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + I DAD  G L     L   +GR+ R   + ++   D + K I
Sbjct: 893 STTIIETGLDISNVNTMIIHDADNMG-LSQLYQLRGRVGRSNRTAYAFLMYRRDKMLKEI 951

Query: 698 QL----AIDE 703
                 AI E
Sbjct: 952 AEKRLAAIKE 961


>gi|224369720|ref|YP_002603884.1| UvrB4 [Desulfobacterium autotrophicum HRM2]
 gi|223692437|gb|ACN15720.1| UvrB4 [Desulfobacterium autotrophicum HRM2]
          Length = 239

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 127/223 (56%), Positives = 168/223 (75%), Gaps = 1/223 (0%)

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           MDN+PL+FEE+  L P TI VSATPG +EL++    + +QI+ PTGL+DPPVEIR+AR Q
Sbjct: 1   MDNQPLKFEEFKGLVPRTIFVSATPGDYELKKAGVRVADQIVWPTGLLDPPVEIRNARMQ 60

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           V+D+Y EI    +   R+L+  LTK M+EDLT+Y  +  I+V+Y+HS++ T+ERI+II+D
Sbjct: 61  VDDLYQEILKRVEAQERVLVKTLTKSMSEDLTDYNSDLGIKVKYLHSDIGTVERIDIIQD 120

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LR G FDVL+GINLLREGLDIPE  LVAILDADKEGFLRS  S IQ  G+AARNVN +VI
Sbjct: 121 LRRGLFDVLIGINLLREGLDIPEVTLVAILDADKEGFLRSFRSFIQIFGQAARNVNGRVI 180

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
           +YA+  T  ++ A+ ET RRR+ Q  +N+ H I P ++ +KI 
Sbjct: 181 MYAEKETGYMKHALTET-RRRKIQEVYNQTHGITPATINKKIS 222


>gi|218460114|ref|ZP_03500205.1| excinuclease ABC subunit B [Rhizobium etli Kim 5]
          Length = 385

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 134/213 (62%), Positives = 164/213 (76%), Gaps = 6/213 (2%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DLTEYL+E+ +RVRYMHS++ TLERIEIIRDLRLG FDVLVGINLLREGLDIPECG VAI
Sbjct: 1   DLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAI 60

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
           LDADKEGFLRS+TSLIQTIGRAARNV+ KVILYAD +T S+Q A+DET RRREKQ+ +N 
Sbjct: 61  LDADKEGFLRSETSLIQTIGRAARNVDGKVILYADQVTGSMQRAMDETARRREKQMAYNL 120

Query: 717 KHNINPQSVKEKIMEVIDPILLEDAATTNISID-----AQQLSLSKKKGKAHLKSLRKQM 771
           ++ I P+SVK KI +++D +   D    +IS       A   +L     +AHL +L K M
Sbjct: 121 ENGITPESVKAKISDILDSVYERDHVRADISGVSGKGFADGGNLVGNNLQAHLNALEKSM 180

Query: 772 HLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
             AA +L+FE+AAR+RDEIKRLK++     +DD
Sbjct: 181 RDAAADLDFEKAARLRDEIKRLKAAE-LAVMDD 212


>gi|253681221|ref|ZP_04862019.1| transcription-repair coupling factor [Clostridium botulinum D str.
           1873]
 gi|253562459|gb|EES91910.1| transcription-repair coupling factor [Clostridium botulinum D str.
           1873]
          Length = 1169

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 106/547 (19%), Positives = 233/547 (42%), Gaps = 50/547 (9%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q      ++K IH  E    + GV+ SG+ + +  + + + +P  +   + + A  LY +
Sbjct: 12  QDNKFKNIVKNIHKNEFPIDVTGVSESGRAYFIKGIYDNIDKPIFIFTNSDVEAKNLYED 71

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
              + P+                 Y+P  +       +I+  +   R    R +L+++  
Sbjct: 72  LSLYIPN---------------AYYLPNKEVVFYNVYAISGDLRWERLKVIREMLKKDRK 116

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IVV+S+  +     S E Y +  + +  GD ++ +EL   L++  Y+R +I   +G F V
Sbjct: 117 IVVASIETLASTYISPELYKEYTINISKGDILDIEELSEKLIQSGYQRTNIVEGKGEFSV 176

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++I+ S +  + +R+ +FG++++ I  F   + + I+  + ++I+     +  + +
Sbjct: 177 RGGILDIY-SPISSIPFRIELFGDEVDSIRSFNTESQRSIKKYKAMEIFPAKELILTKES 235

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           ++     I+++L+   + L  +   LE  ++++    +LE L+ + + ++I+++  Y   
Sbjct: 236 IDKGYSSIRDDLEKIKVSLLDDEETLE--KIQKDTLDNLESLKESWNFENIDSFMPYFY- 292

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               E    L +Y+ EDSL+F+++   +  ++  +Y         L E G  L   ++  
Sbjct: 293 ----ENKSMLLDYM-EDSLVFINDLQRSFGKLDTVYFEFIENYKHLLEKGNILSRQIELL 347

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVED 570
             + E    +  + I          +          I++P        + + S   ++E 
Sbjct: 348 VPKDELLQKIIDSNI----------ITLNLIYKERDILKPKHKESFQQILLNSYEGKLEL 397

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + +EI++  Q+G + L+   T+   E L E L + NI   Y           +I+ ++  
Sbjct: 398 LLEEISIKKQRGYKTLILSGTRPRGERLVETLRDYNIESVY----------KDIVDNIEF 447

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI--QTIGRAARNVNSKVIL 688
           G+  +  G  +  +G + P+  L  I D D  G  R +T     + IG+       K   
Sbjct: 448 GEVVITFGNQI--KGFEYPDLKLCVISDKDFFGKSRKRTKRTNEKGIGKIKSFAELKPGD 505

Query: 689 YADTITK 695
           Y      
Sbjct: 506 YVVHTNH 512



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 75/194 (38%), Gaps = 15/194 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVE--IRSARTQ-VEDVYDEINLAAQ 580
            + ++ATP    L     GI    +I        PV+  +     Q +ED          
Sbjct: 775 VLTLTATPIPRTLHMSLTGIRDISVIETPPEERYPVQTYVVEFNDQLIEDAISRELDRDG 834

Query: 581 QGLRILLTVLT-KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q   +   V + K MA  L +      I +   H ++   E  +++ D    ++D+LV  
Sbjct: 835 QVYFVYNRVGSIKEMAAYLAKMFPNSKIGIA--HGQMPERELEKVMYDFMRKEYDILVCT 892

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDI     + I DAD+ G L     L   +GR+ R   + +    D +      
Sbjct: 893 TIIETGLDIQNANTMIIYDADRFG-LSQLYQLRGRVGRSNRMAYAYLTYKKDKV------ 945

Query: 700 AIDETTRRREKQLE 713
            + E   +R K ++
Sbjct: 946 -LTEVAEKRLKAIK 958



 Score = 38.5 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 74/224 (33%), Gaps = 10/224 (4%)

Query: 81  QSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITF 140
             S   S K  +    + +    +    + +    L+K   I +  +    N  +     
Sbjct: 557 IGSEGKSPKVNKLGGSEWIKAKTKVKKAINEIAEELVKLYAIRSTLKGHKFNKDTIWQKQ 616

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFTMAKVIEAM---QRPA 196
           F+ +  Y  + DQ  AI ++   + S +   +LL G  G GKT    +         +  
Sbjct: 617 FEEEFPYDETPDQLTAIQEIKSDMESGKAMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQV 676

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
             + P  ILA Q Y+     F       F    +         +  + + +    N  I 
Sbjct: 677 AFLVPTTILAEQHYTNLIQRFCD-----FPVNIEMISRFKTSAQVKSILNEVRVGNVDIL 731

Query: 257 RMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
              H   +  +E ++  +++      +G+   E    +   + +
Sbjct: 732 IGTHRILQKDVEFKDLGLLIVDEEQRFGVTHKEKIKNLKKNVDV 775


>gi|291535574|emb|CBL08686.1| transcription-repair coupling factor [Roseburia intestinalis M50/1]
          Length = 1176

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 100/511 (19%), Positives = 193/511 (37%), Gaps = 44/511 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
                L  G+H    +  + G   + K   M  V        I++   +  A ++Y E++
Sbjct: 12  KEFETLSAGVHDLRGIAQISGCIDAAKPHIMYSV-NNGSGNRIIVTFQEQRAKEIYEEYR 70

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            F P                 AY P  D    +       +   R +A + L E + C +
Sbjct: 71  FFDPK---------------AAYYPAKDILFYQSDIRGNVLTAERINALKMLAEESSCTI 115

Query: 275 VSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           +++   +   +   E + Q + ++ +GD +  +EL   LV+  Y++       G F V G
Sbjct: 116 ITTFDGLMNPMPMPEKFIQEVKKVSVGDILNLEELTKHLVELGYEKNYQAETMGEFSVRG 175

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++IFP   ED  +R+  +G++++ I  F   + + I N+E I IY     V       
Sbjct: 176 GILDIFPL-TEDNPFRIEFWGDEVDSIRSFDAESQRSIENLEEISIYPACELVLTAEERQ 234

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             +K I +E      +L KE +  EA R +       E     G    ++ Y  Y     
Sbjct: 235 EGIKRILKEADKVSAKLRKEMKTEEAHRTKSAAAQIAEEAGELGISAGLDAYLSYFC--- 291

Query: 454 PGEPPPTLFEYIP-EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
             E   +L +Y   E++++FVDE   +I +                E G+ LP     R 
Sbjct: 292 --EERVSLLDYFNRENTVIFVDELARSIERGMVTETEFSESMKQRLEKGYILPGQ--MRE 347

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           L F     L     +   +  + +L+     I E+ +  +        +       + + 
Sbjct: 348 L-FSCKEILAKMEKMACISLVALDLKNSHVDIKEKFVIDSKT------VNPYNNSFDLLV 400

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            ++    + G R++L   ++  A+ L E L    +   Y           +   +++ G+
Sbjct: 401 KDLTRYKKNGYRVILLSGSRTRAKRLAEDLMAEELNAFY---------SEDFDHEVKPGE 451

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEG 663
             ++ G   +++G + P    V I ++D  G
Sbjct: 452 --IMTGYGKIKKGYEYPLLKFVVISESDIFG 480



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 76/190 (40%), Gaps = 16/190 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +  +    L +PP++    +T V     E V + I+   
Sbjct: 777 VLTLTATPIPRTLHMSLIGIRDMSV----LEEPPMDRVPIQTYVMEYNEELVREAISREL 832

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G +        R   D+   + E      V Y H ++K  E   I+     G+ DVLV
Sbjct: 833 SRGGQAYYVYNRVREIADVAAKIAELVPEANVAYAHGQMKETELENIMYRFINGEIDVLV 892

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + I DAD  G L     L   +GR+ R   + ++   D + K I
Sbjct: 893 STTIIETGLDISNVNTMIIHDADNMG-LSQLYQLRGRVGRSNRTAYAFLMYRRDKMLKEI 951

Query: 698 QL----AIDE 703
                 AI E
Sbjct: 952 AEKRLAAIKE 961


>gi|302876604|ref|YP_003845237.1| transcription-repair coupling factor [Clostridium cellulovorans
           743B]
 gi|307687278|ref|ZP_07629724.1| transcription-repair coupling factor [Clostridium cellulovorans
           743B]
 gi|302579461|gb|ADL53473.1| transcription-repair coupling factor [Clostridium cellulovorans
           743B]
          Length = 1173

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 94/522 (18%), Positives = 210/522 (40%), Gaps = 58/522 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              L K          + G+  S + F +  + E + +  +V+  + + A  LY + + F
Sbjct: 16  FETLYKSYKQERFPIGIYGLADSSRAFALFSIFEKLDQTMLVLTSSDVEARNLYEDLQFF 75

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P   V YF             P  +       +++  +   R    + +   N  I+VS
Sbjct: 76  TP--KVYYF-------------PTKEVVFYNIEAVSGDLRWERLKVLKEIKSNNKKIIVS 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           S+  +      +E   Q   +LK+ D++   +    LV+  Y+R +I   RG F + G  
Sbjct: 121 SIENLAPNYCPIEYIEQSFFKLKLNDTLITADFSMKLVQSGYERVEIIDARGQFSIRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I++FP     V +R+ +FG++I+ I  F   + + I  V  I+++     +     +   
Sbjct: 181 IDVFPP-TSSVPFRIELFGDEIDSIRTFNLESQRSIERVTEIELFPAKEMILTNELVEKG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ I+++L+  L   +K       +++   I  ++E L+   + ++I+++  Y       
Sbjct: 240 VERIEKDLEKVLQVAKKRDDKELEEKIRFSINRNIESLKERWTFETIDSFLTYFY----- 294

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E P +  +Y  +D ++ ++++  T  ++  +Y        +  E G  LP   +    + 
Sbjct: 295 EKPSSFLDYF-KDCMICIEDTDRTSGKLDSVYYEFASNYKSYLEKGDILPGQGELLVPKE 353

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-------RSARTQV 568
           E                    L   +   +  II+ + + +P V +        S + ++
Sbjct: 354 ETLER----------------LSLSKLFTLNSIIKASKIFEPRVTVTFNEISLNSYQGKM 397

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + + ++I    ++G + ++   T+   E   + L + +I   Y           + I+++
Sbjct: 398 DLLTEDIRDKKRRGFKTVILSGTRPRGERFVKTLADYDIVATY----------KDTIQEI 447

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           + G+  +  G  L  +G + PE  +  I D D  G    K +
Sbjct: 448 KEGEVVITFGNQL--KGYEFPEYKVSIISDKDFFGETTRKNA 487



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     G+    +I        PV+        + + D +     +  
Sbjct: 779 VLTLSATPIPRTLNMSLTGVRSISVIETPPEERYPVQTYVVEYNDQLIRDAVLREINRKG 838

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++           ++ + L       R +  H ++   E  E++R     ++D+LV   +
Sbjct: 839 QVFFVFNRVENIREIADSLAHLIPEARIIVAHGQMAEKELEEVMRAFMNQEYDILVSTTI 898

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I DADK G L     L   +GR  R   + +    D I       I
Sbjct: 899 IETGIDIQNANTMIIYDADKMG-LSQLYQLRGRVGRTNRIAYAYLTYRKDKI-------I 950

Query: 702 DETTRRREKQLE 713
            E  ++R K ++
Sbjct: 951 TEVAKKRLKAIK 962



 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 76/224 (33%), Gaps = 10/224 (4%)

Query: 81  QSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITF 140
             S   + K T+    +      +A   + +    L+K        + +S +  +     
Sbjct: 561 IGSEGKAPKITKLGGSEWQKAKTKARNSINEIAQDLVKLYATREAVKGYSFSKDTTWQQQ 620

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+ +  Y  + DQ +AI ++   +   +   +LL G  G GKT   M    +A+   + A
Sbjct: 621 FEAEFPYEETPDQISAIEEIKVDMEKNKPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQA 680

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
             + P  ILA Q Y   K  F       F    D         +    ++     N  I 
Sbjct: 681 AFLVPTTILAEQHYKTLKKRFTG-----FPVNIDMISRFRSATQQKETLKSLKEGNVDII 735

Query: 257 RMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
              H      ++ ++  +++      +G+   E        + +
Sbjct: 736 IGTHKILGKTVQFKDLGLLIVDEEQRFGVSHKEKIKNAKKNIDV 779


>gi|225181416|ref|ZP_03734859.1| transcription-repair coupling factor [Dethiobacter alkaliphilus AHT
           1]
 gi|225167814|gb|EEG76622.1| transcription-repair coupling factor [Dethiobacter alkaliphilus AHT
           1]
          Length = 1177

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 100/508 (19%), Positives = 194/508 (38%), Gaps = 41/508 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            ++  LL+G+  + + QL+ G+  S +T  MA +     RP +++ P++  A ++Y +  
Sbjct: 13  PSLQPLLEGLKVKSRYQLVYGLDESARTMLMAALRLHTDRPVLIVTPDQTHAGRIYEDML 72

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           + F    V  F      Y    +    D                R +A + L   ++ +V
Sbjct: 73  SVFKDEDVYLFPGKELLYYSNLFSESGDA------------AAQRIAAMKRLARGDNIVV 120

Query: 275 VSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V++VS +   +     + +    L+  D +   ELL  LV   Y+R ++  ++G   V G
Sbjct: 121 VATVSAMVTKMPPFAPWQEACFTLRPDDDIPIDELLGKLVDGGYERVEMVDVQGQVSVRG 180

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++I+P+  E   +R+  FG  ++ I  F P + +    V+ +++      V       
Sbjct: 181 GIVDIYPA-GEPYPYRIEFFGETVDSIRRFDPESQRSRERVDLLELTPARELVVTAAERK 239

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A+  + +E      +L K  R     +L++R+   +E +        +E Y  Y   + 
Sbjct: 240 NALSALAKEDAKLSEQLAKGVRTEAEGKLQERLAEHMEKIREEVYFPGMEQYLLYFYDQA 299

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
                  + +Y P+++LLF+DE          + R     ++TL   G       D    
Sbjct: 300 AK-----ITDYFPDNTLLFIDEPQRCENTAEQLVREIGEMQSTLFAQGDLPARSADMVWS 354

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
                  L    +  S                 +  R   L   P  +     Q +   +
Sbjct: 355 YKSLLANLLTQLVAFSL------FAHSSDHHPYR--RSVSLSAKP--VPKFLGQWDLFGE 404

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E+    +QG R+++   +++ +  + E L E+NI   Y  SE    +R            
Sbjct: 405 EVGQWRRQGYRVVILTSSRQRSTGIVEVLAEKNIPAHYTLSEPDLAQRS----------- 453

Query: 634 DVLVGINLLREGLDIPECGLVAILDADK 661
            V +    L  G  +PE  LV + + D 
Sbjct: 454 -VTLLHGSLESGFVLPEIKLVLLTEQDI 480



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 75/193 (38%), Gaps = 22/193 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV----EDVYDEINLAA 579
            + ++ATP    L           +R   +++ P E R   +T V    + +  E  +  
Sbjct: 778 VLTMTATPIPRTLHMSLVG-----VRDMSVIETPPEDRYPIQTYVLEYSDALIREAVMRE 832

Query: 580 QQGLRILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  V  +     R A  L E + E  + V   H ++      +++     G++D
Sbjct: 833 LNRGGQVYFVHNRVQSINRWAAKLQELMPEVRLAVA--HGQMPEDRLEKVMMGFLEGEYD 890

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VL+   ++  GLDIP    + I DADK G  +    L   +GR+ R   + +    D + 
Sbjct: 891 VLLSTTIVEAGLDIPNVNTIIIQDADKFGLAQ-LYQLRGRVGRSNRIAYAYLTYQKDKVL 949

Query: 695 KSIQL----AIDE 703
             +      AI E
Sbjct: 950 TEVAEKRLQAIKE 962



 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 99  MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSIN-NHSKDITFFQMQTDYHPSGDQPAAI 157
           +   VQA  + +  +   L   +   P  ++S + +  KD   F+    Y  + DQ  AI
Sbjct: 580 VKARVQASVQELAKELLALYAARETEPGHAFSPDHSWQKD---FEAAFPYEETPDQLQAI 636

Query: 158 AQLLKGIHSRE-KVQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKILAAQLYSEF 213
           A++ + +       +LL G  G GKT   +    +A+   + A  + P  +LA Q Y  F
Sbjct: 637 AEVKQDMEKSTVTDRLLCGDVGYGKTEVALRGAFKAVMDDKQAAFLVPTTVLAQQHYHNF 696

Query: 214 KNFFPHNAV 222
                   V
Sbjct: 697 VERLEGFPV 705


>gi|20808914|ref|NP_624085.1| transcription-repair coupling factor [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517574|gb|AAM25689.1| Transcription-repair coupling factor - superfamily II helicase
           [Thermoanaerobacter tengcongensis MB4]
          Length = 1169

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 97/543 (17%), Positives = 214/543 (39%), Gaps = 44/543 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
             +  + + +       L+ G+  S K      +++   +  +V+ P+ + A ++Y +  
Sbjct: 10  KEVKAIEEELKQGRGPVLIYGLADSQKAHIAHYLMKKFNKKVLVITPDDVEARRIYEDLY 69

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +F    A              +  P+ D    K  + + +I   R    + L E     V
Sbjct: 70  SFNEGEA--------------SLFPKRDIVFYKIDAASHEIVFERLKVIKRLSEDRPYAV 115

Query: 275 VSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+SV  +   +     + +    LKIGD ++  + L  L    Y+R  +   +G F V G
Sbjct: 116 VASVDALLDKMPPFYLFRKYQFSLKIGDKIDLGKFLKKLEVMGYERVQMVEGKGQFSVRG 175

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+IFPS  E+  +R+ +F ++++ +  F  +T + I+  E + I+  + ++     + 
Sbjct: 176 GIIDIFPS-TEEYPFRIELFDDEVDSLRTFDVMTQRSIKTAEEVFIFPATEFIVEEEHIK 234

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             +  + ++L   L ++ K    +  ++L ++    +E +      +SI+    Y     
Sbjct: 235 RGISSLSKDLNSYLSKIRKTKSGMA-EKLREKFDEIMEEISQGKKRESIKVLINYFY--- 290

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             E   ++ +Y+ ED+++ +DE++    ++S +          L E G  +P   +    
Sbjct: 291 --EDLQSIKDYVGEDAIVILDETNRIKQRVSNLQLEFNENFKNLLERGEVIPEQREIFFD 348

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
             E    L+   +V+  T    E E     IV  + R          + S   +++ + +
Sbjct: 349 YTEVEERLKNNFLVIMNTLAKPEGELHPQRIVNFVSRS---------MHSFHGKMDLLVE 399

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++      G R+LL    K  A+ L E L E  I          ++   +   D++ G+ 
Sbjct: 400 DLKYYKATGYRVLLLSGNKDRAKILKETLEEYGI---------DSVVVEDNEYDIQRGQ- 449

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG--RAARNVNSKVILYAD 691
            V++    + +G +  +     I D++  G  +     ++     R       +V  Y  
Sbjct: 450 -VVIYPASITKGFEYVDAKFAVISDSEIFGQTKRARKPVKMRNAERIKSFTELEVGSYVV 508

Query: 692 TIT 694
            + 
Sbjct: 509 HVN 511



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 95/250 (38%), Gaps = 15/250 (6%)

Query: 525  TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             + +SATP    L      I +  I+        PVE        E + D I     +G 
Sbjct: 775  VLTLSATPIPRTLHMSLIGIRDMSILENPPEDRFPVETYVVEFNEELIKDAILREVGRGG 834

Query: 584  RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
            ++       +  E +  ++ E     R    H +++  +  +++ D   G++DVLV   +
Sbjct: 835  QVYFVYNRVQGIEKMANFIKELVPNCRIAVAHGQMEENKLEQVMVDFLKGEYDVLVTTTI 894

Query: 642  LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            +  GLDIP    + + DADK G  +    L Q  GR  R+       +     K     +
Sbjct: 895  IETGLDIPNVNTIIVYDADKLGLAQ----LYQLRGRVGRSNRLAYAYFTYRKDK----VL 946

Query: 702  DETTRRREKQLEHNKKHNINPQSVKEKIMEV-IDPILLEDAATTNISIDAQQLSLSKKKG 760
             E   +R + ++   +        K  + ++ I        A  +  IDA    L  K  
Sbjct: 947  SEVAEKRLEAIKEFTEFG---SGFKIAMRDLEIRGAGNLLGAEQHGHIDAVGYDLYLKLL 1003

Query: 761  KAHLKSLRKQ 770
            +  +++L+ +
Sbjct: 1004 EEAIRNLKGE 1013


>gi|220932952|ref|YP_002509860.1| transcription-repair coupling factor [Halothermothrix orenii H 168]
 gi|219994262|gb|ACL70865.1| transcription-repair coupling factor [Halothermothrix orenii H 168]
          Length = 1170

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 99/516 (19%), Positives = 207/516 (40%), Gaps = 42/516 (8%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +++KGI+  + +  + G+ G+   F    +++ + +  +++  + +   + Y +     
Sbjct: 14  EKIMKGINQGQNL-FIEGMPGNRFAFITGNILQKIDKTVLMVTYDTVHLNRYYEDLIRMM 72

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
           P   V  +        PE+ V   +  +   +   ++I  ++   T    ++   ++ ++
Sbjct: 73  PEEKVLLY--------PESEVLPHEQIVPDLAETAQRIRVLQSVITD---KKPAVLLTTA 121

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            + +  +  V ++ + I  L++G  ++  +    L    Y R ++    G F + G  I+
Sbjct: 122 TALLRKMIPVSTFKKYIFSLQVGQEIDLNKFTEKLRISGYNRVEMVENPGEFSIRGGIID 181

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP  + +  +R+ +FG++I+ I EF P T +  R++E + I      +     +  A+ 
Sbjct: 182 IFPLSV-NKPFRIELFGDEIDTIREFEPATQRSRRSLEKVFISPAREIIVSPRQIKKAIP 240

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            IK +    +  L +     E   L ++    LE L         E +  Y         
Sbjct: 241 AIKSDFNDTINTLYENNYKEEGDYLREKRDESLEKLAERDDFPGSEQFLPYYYPEL---- 296

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
             TL +Y+P+DS++F D++  T  +I G        +ATL E G  LP+   N   R   
Sbjct: 297 -HTLIDYLPDDSVIFFDQAEKTWQRIKGFIDELQETQATLLEQGSVLPTYHKNFLSREAL 355

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
            + L+    V S+T  + EL   +    E++   T        +     +++   + +  
Sbjct: 356 LDKLKDFNFVYSSTSINEELSWVKD--FEKVSFTTRS------VEPYHGKLDLFAERVRE 407

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
               G R+ +T+ +   A  +  YL E  + V +         R E  R+       ++V
Sbjct: 408 LVDTGYRVFVTLNSSNKARRVVNYLKENEMAVAF--------RREEFSRE------RIIV 453

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
               L EG  I +  L      +KE     +    Q
Sbjct: 454 MPGSLSEGFIIDDINLALF--TEKEVLGNPQKKRRQ 487



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 68/189 (35%), Gaps = 14/189 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P+         E + D +     +  
Sbjct: 777 VLTMTATPIPRTLHMALVGVRDMSVIETPPENRYPIRTYIREFNKELIRDAVRKELGREG 836

Query: 584 RILLTVLTKRMAEDLTEYLYERN-----IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++          ED+ E            RV   H ++   +   ++ D    ++DVLV 
Sbjct: 837 QV---YFVHNRVEDIQEQATMIKKLVPECRVAVAHGQMNEHKLERLMLDFYNHQYDVLVC 893

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  GLDIP    + +  AD+ G  +    L   +GR+ R   + ++   D +   + 
Sbjct: 894 TTIIETGLDIPNVNTIIVNRADQMGLAQ-LYQLRGRVGRSNRIAYAYLLYEKDRVLPEVA 952

Query: 699 ----LAIDE 703
                AI E
Sbjct: 953 EKRLRAIKE 961


>gi|150014978|ref|YP_001307232.1| transcription-repair coupling factor [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901443|gb|ABR32276.1| transcription-repair coupling factor [Clostridium beijerinckii
           NCIMB 8052]
          Length = 1166

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 95/515 (18%), Positives = 197/515 (38%), Gaps = 61/515 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              +++GI S+     + G + SG+ + ++ + E   R  +V+  + + A  LY +   +
Sbjct: 16  FQDIIQGIESKRYPIGIYGASESGRGYIISGIFENTNRSIVVVTQSDMEAKNLYEDLIFY 75

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V YF             P  +       +I+  +   R      +L     I+V+
Sbjct: 76  TSE--VYYF-------------PVKEMVFYNIDAISGDLRWARLKVINEILNNKKKIIVT 120

Query: 277 SVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           S+       +  + + +  ++ K GD V   ++   L++  Y+R ++   +G F + G  
Sbjct: 121 SIEAFAAKYTPHNLFLEYSMKFKEGDEVNLADISKKLIQSGYERVEMVEGKGQFSLRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +++FP       +RV +FG++IE I  F   + + I  V+ I I+     +     L   
Sbjct: 181 LDVFP-TGSTYPYRVELFGDEIESIRTFNTESQRSIEKVKKIDIFPAKEVIVSEEMLEVG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              +KEE        E +      ++L + +  +LE+LE T S ++I++Y  Y T     
Sbjct: 240 RNKLKEEFN---KIAESDKDSERVEKLRKILNKNLELLEETSSFETIDSYLPYFTKETE- 295

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
               +LF+Y  ++    VD       ++   Y          ++ G   P   +      
Sbjct: 296 ----SLFDYF-KNYFFIVDNVQRCNGKLESTYLEFEENFTAFSQRGDIFPGQGN------ 344

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-------RSARTQV 568
                     ++++        E  +   +E + + +G + P   +        + + Q+
Sbjct: 345 ----------LLINKEEVLESFEDEKIAFIEALTKVSGWLKPLSIVNVAQTTLNNYQGQL 394

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + + DEI      G + L+   T+   E L   L +R I   Y           + +  +
Sbjct: 395 DLLIDEILGKKNLGYKTLILSGTRARGERLVGTLRDRGIESVY----------KDTVDKI 444

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             G+  +  G  L   G + P+  +  I D +  G
Sbjct: 445 EYGEVVITFGNQL--RGFEYPQYKVCIISDKEVFG 477



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 67/178 (37%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +I        PV+        + + D I     +G 
Sbjct: 776 VLTLSATPIPRTLHMSLSGVRDISVIETPPEERYPVQTYVVEQNDQLIRDAILREIGRGG 835

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E + +Y+       +    H ++   +  + + D    +++VLV   +
Sbjct: 836 QVYFVYNRVEDIERMAKYVQSLVPESKVGIAHGQMAERQLEKEMFDFMSEEYNVLVCTTI 895

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DI     + I DADK G L     L   +GR+ R   + ++   D +   +  
Sbjct: 896 IETGMDIQNVNTIIIYDADKMG-LSQLYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAE 952



 Score = 38.5 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 4/143 (2%)

Query: 81  QSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITF 140
             S   S K  +  S +      +A   + +    L+K   + +  +    +  ++    
Sbjct: 558 IGSEGKSPKVNKLGSAEWQKAKAKARKSINEIAEDLVKLYAMRSTVKGHKFSKDTEWQKQ 617

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+ +  +  + DQ  ++ ++   +   +   +LL G  G GKT   +    +A+   +  
Sbjct: 618 FEDEFPFEETPDQLTSLEEIKIDMESDKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQV 677

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
            ++ P  ILA Q Y   KN F  
Sbjct: 678 ALLVPTTILAEQHYKNIKNRFSD 700


>gi|145641146|ref|ZP_01796727.1| excinuclease ABC subunit B [Haemophilus influenzae R3021]
 gi|145274307|gb|EDK14172.1| excinuclease ABC subunit B [Haemophilus influenzae 22.4-21]
          Length = 224

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 161/224 (71%), Gaps = 9/224 (4%)

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +T LTK+MAEDLT+YL E  IRVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGL
Sbjct: 1   MTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGL 60

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           DIPE  LVAILDADKEGFLRS+ SLIQTIGRAARN+N K ILYAD+ITKS++ AI ET R
Sbjct: 61  DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYADSITKSMEKAITETNR 120

Query: 707 RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ---------QLSLSK 757
           RREKQ+++N++H I PQ++ +K+ E++D     +          +             + 
Sbjct: 121 RREKQIKYNEEHGIVPQALNKKVGELLDIGQGANQKAKANKQRGKMAAEPTALYNAPKNA 180

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQG 801
           K+ +  +K L +QM+  A +L FE+AA IRD++ +L+    F  
Sbjct: 181 KEYQQQIKKLEQQMYKFAQDLEFEKAAAIRDQLHQLREQFVFDN 224


>gi|227326992|ref|ZP_03831016.1| excinuclease ABC subunit B [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 223

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 120/220 (54%), Positives = 153/220 (69%), Gaps = 5/220 (2%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLR
Sbjct: 1   RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLR 60

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
           EGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAARN++ K ILY D IT S+  AI E
Sbjct: 61  EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLSGKAILYGDRITASMAKAIGE 120

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVID---PILLEDAATTNISIDAQQLS--LSKK 758
           T RRREKQ  +N +H I PQ + +KI +++    P           + +       ++ K
Sbjct: 121 TERRREKQEAYNTEHGIVPQGINKKISDILQLGRPTNKGKGRGNRKAAEPTARYELMTPK 180

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
             +  ++ L  +M   A NL FEEAA +RDE++ L++   
Sbjct: 181 ALELKIRELESKMLTHAQNLEFEEAAALRDEVQALRAQFI 220


>gi|332798184|ref|YP_004459683.1| transcription-repair coupling factor [Tepidanaerobacter sp. Re1]
 gi|332695919|gb|AEE90376.1| transcription-repair coupling factor [Tepidanaerobacter sp. Re1]
          Length = 1178

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 107/528 (20%), Positives = 200/528 (37%), Gaps = 52/528 (9%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A   +L+K +          GV+ S + + +A +        +V+  + + A +L  +  
Sbjct: 12  AEFQKLVKDLSRGMSHLFAYGVSDSQRAYLIAALKNRAVPQILVVTADSLEAKKLAEDLL 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            F   + V  F             P +     + ++ + +    R     +LL +   +V
Sbjct: 72  FFLSADEVAVF-------------PASSVLPYETAARSPEFTAKRLKVMENLLMKKPMVV 118

Query: 275 VSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+ +  +   + + +   +  ++LK+GD +   +++S L    Y+R ++   +G F V G
Sbjct: 119 VAPIQALLTKVVAPDIVKKFTLELKVGDIIAMDDIVSKLSAMGYERVEMIEAQGQFAVRG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++I+P   ++  +R+  F ++I+ I EF     + I  ++ I +      V    T  
Sbjct: 179 GILDIYPL-TQEYPYRLEFFDDEIDSIREFLTEDQRSIDKLDKIFVGPAREVVYDEDTAK 237

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
           +A   I EELK R   L   G    A+ L +++   +  L      +S E Y  +L  R 
Sbjct: 238 SAAIAIAEELKQRRNLLNSLGHPELAEHLAEKVEEHIGKLSNGLFFESAELYISHLYPRL 297

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
                 T+ +Y     +  + E    +                L E G  L S  +    
Sbjct: 298 -----CTILDYFENRLISVLVEPGRILEAQKNAAFEVQETYKGLLERGEILASQANIYCS 352

Query: 514 RFEEWNCLRPT-TIVVSATPG---SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
            FE    L+   T+  S  P     +E  +      + I    G +D  VE         
Sbjct: 353 PFEILERLKQQRTVYFSMLPKIHPEFESRKLYSFQFQSIPSFYGKLDLAVE--------- 403

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
               EI    ++  RI+L   T   A+ L++ L E++I V  ++S+            L+
Sbjct: 404 ----EILRLKRRNYRIVLLSGTAERAKYLSKSLREKDIEVS-IYSDEDGP--------LQ 450

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            G+  V+V    L  G D P   L    D++  G  +      QT  R
Sbjct: 451 PGQ--VVVMPGSLEHGFDNPNIRLAIFSDSEIYGRPKK----RQTKAR 492



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 61/181 (33%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      + +  II        P++          + D I     +  
Sbjct: 780 VLTLTATPIPRTLHMAMSGLRDMSIIETPPEDRFPIQTYVVEHNESLIRDAIMRELSRNG 839

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +   +  + L       R    H ++   E  E++       +DVLV   +
Sbjct: 840 QVYYVYNRVQTIHEEAQKLKRLVPEARIAVAHGQMNEDELEEVMLGFYEHDYDVLVCTTI 899

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + +  AD+ G  +    L Q  GR  R+             K +  A 
Sbjct: 900 IESGLDIPNVNTLIVTSADRLGLSQ----LYQLRGRVGRSNRQAFAYLTYKKDKVLSEAA 955

Query: 702 D 702
           +
Sbjct: 956 E 956



 Score = 40.8 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 14/137 (10%)

Query: 90  QTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHP 149
           + +  ++ ++    + L +L  +   +  +G  ++    W           FQ    Y  
Sbjct: 581 KAKSKAKDSIKQMAEELIKLYATRESV--SGFAFSADSPWQKE--------FQDMFPYEE 630

Query: 150 SGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKIL 205
           + DQ AAI ++ + + S +   +LL G  G GKT   M    +A+   +   V+ P  IL
Sbjct: 631 TPDQLAAIEEVKRDMESPKPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLVPTTIL 690

Query: 206 AAQLYSEFKNFFPHNAV 222
           A Q +  F   F    V
Sbjct: 691 AEQHFHTFAERFKPFPV 707


>gi|225375822|ref|ZP_03753043.1| hypothetical protein ROSEINA2194_01454 [Roseburia inulinivorans DSM
           16841]
 gi|225212257|gb|EEG94611.1| hypothetical protein ROSEINA2194_01454 [Roseburia inulinivorans DSM
           16841]
          Length = 1183

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 104/526 (19%), Positives = 200/526 (38%), Gaps = 48/526 (9%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q     +L + +   E V L+ G   + K   +  V        I++  ++  A +L  E
Sbjct: 10  QLQGYEELEQAVQKTEGVILVSGCIDAVKPHIVYSV-HNGSGNRIIVTFHEQKAKELLEE 68

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
           ++ F  +                AY P  D    +       +   R +A + + E  +C
Sbjct: 69  YRFFDKN---------------VAYYPAKDILFYQSDIRGNVLTSERINALKMMAEEKEC 113

Query: 273 IVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            ++++   +   + + E + Q + ++ +GD+VE  EL   LV+  Y++       G F V
Sbjct: 114 TIITTFDGLMNPMPAPEKFIQAVKKISVGDTVELNELTRHLVELGYEKNYQAETMGEFSV 173

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I+IFP   E+  +R+ ++G++++ I  F P + + I N+E I IY     V     
Sbjct: 174 RGGIIDIFPL-TEETPFRIELWGDEVDSIRSFDPESQRSIENLEEIYIYPACELVLTEEE 232

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
               +  I++E +    +  KE +  EA R++       E     G    ++ Y  Y   
Sbjct: 233 RRNGVAKIQKEAEKAAEKFRKEMKTEEAYRVKSMADQIAEETMEYGITAGLDAYLSYFC- 291

Query: 452 RNPGEPPPTLFEYIPE-DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
               E   +L +Y+ + DS++F+DE+  TI +                E G+ LP     
Sbjct: 292 ----EERVSLLDYLKKEDSIVFLDETVRTIERGQSTETEFSESMKQRLEKGYILPGQ--M 345

Query: 511 RPLRFEEWNCL--RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           R L F     L        V+             +   Q+     +      +       
Sbjct: 346 REL-FSCKEILAQINQRRCVAMV--------ALDMKCNQLNIKDRIAIESRTVNPYNNSF 396

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +  ++    + G R++L   ++  A+ L E L    +   Y           +  R L
Sbjct: 397 ELLVKDLKHYKKNGYRMILLSSSRTRAKRLAEDLMNEELPAFY---------SEDFDRVL 447

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
             G+  ++ G   +++G + P    V I ++D  G  + K    + 
Sbjct: 448 SPGE--IMTGYGKVKKGYEYPAVKFVVISESDIFGSEKKKKKRHRM 491



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 72/186 (38%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      I +  ++    +   P++        E V + I+    +G 
Sbjct: 777 VLTLTATPIPRTLHMSLIGIRDMSVLEEPPMDRIPIQTYVMEYNEELVREAISRELARGG 836

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +        +   D+   + E      V Y H ++K  E   I+     G+ DVLV   +
Sbjct: 837 QAYYVYNRVKEIADVAAKIAELVPEANVAYAHGQMKETELENIMYKFINGEIDVLVSTTI 896

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-- 699
           +  GLDI     + I DAD  G L     L   +GR+ R   + ++   D + K +    
Sbjct: 897 IETGLDISNVNTMIIHDADNMG-LSQLYQLRGRVGRSNRTAYAFLMYKRDKMLKEVAEKR 955

Query: 700 --AIDE 703
             AI E
Sbjct: 956 LAAIKE 961


>gi|296131721|ref|YP_003638968.1| transcription-repair coupling factor [Thermincola sp. JR]
 gi|296030299|gb|ADG81067.1| transcription-repair coupling factor [Thermincola potens JR]
          Length = 1178

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 101/528 (19%), Positives = 206/528 (39%), Gaps = 48/528 (9%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A    L  G+      Q++ G++G+  ++ +A +IE +  PA++MAPN I A +   + +
Sbjct: 14  AEFNSLTAGLKRGLAYQMVYGLSGAQNSYLIAGIIEKLNVPALIMAPNGIAAKKRLDDLR 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           NF P+  + Y+             P  +       + ++++   R +    L+++++ I+
Sbjct: 74  NFLPNREILYY-------------PELEHVPFGSIAQSKELAAQRLAVLAKLVQQDNLII 120

Query: 275 VSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+ V  +Y  +     + +  + L +G  + Q++++   + Q Y+R ++    G F V G
Sbjct: 121 VAPVEALYQQLIPRSVFEKFSLCLSVGQIISQEKMIEVFLAQGYERVEMVEGPGQFSVRG 180

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+IFP   E    R+ +F ++I+ I EF   + + +  ++   IY     V  R    
Sbjct: 181 GIIDIFPQTRE-RPLRIELFDDEIDSIREFKVDSQRSLNRLQEAVIYPAVELVVERENFV 239

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A   I  +       L+K G+     +L+++    +E L +    + +E Y  Y     
Sbjct: 240 KAADLIAADFAEHGKRLKKIGKYEAFNKLQEKTKEIIEKLRSGLYIEGMEYYFSYFYPEG 299

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR-- 511
                 +L +Y+   ++LFV+E       +               E G  LP        
Sbjct: 300 -----ASLLDYLDRKTVLFVEEPSRQKEYLQNRINEMADSHTHYLETGLALPKQGRAYFN 354

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS-ARTQVED 570
           P   ++                               IRP  +V    +      ++ + 
Sbjct: 355 PDDLQKSAKDFSQVGF------------SLLPKQPAGIRPGNIVSFAGKSIPFFMSKTDL 402

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + +EI    ++G  I +   T   AE + + L +  +   Y+           I  +L+ 
Sbjct: 403 LVEEIRNRRKKGYAIAIMASTSNRAEKIRDLLRDSKVDAFYVS---------RITGELKP 453

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS--KTSLIQTIG 676
           G  +V++    +  G +I +     I D +  G  +S  K +L    G
Sbjct: 454 G--NVIITEGRIEAGFEIGQIKFALITDLEIYGKRKSGKKATLRHQEG 499



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 68/181 (37%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP-PVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      + +  I  T   D  PV+        + + D +     +G 
Sbjct: 782 VLTLTATPIPRTLHMSLVGVRDMSILETPPEDRWPVQTYVLEFNWDVIGDAVRKEMDRGG 841

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   L       R    H ++K  +  +++ +   G++DVL+   +
Sbjct: 842 QVYFVHNRIMDIDQIAAQLRAAVPEARVAVAHGQMKEDQLEQVMLEFLEGEYDVLLCTTI 901

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + + +AD+ G  +    L Q  GR  R+       +     K +    
Sbjct: 902 IETGLDIPNVNTLIVDEADRMGLSQ----LYQLRGRVGRSHRLAYAYFTYRRDKVLTEVA 957

Query: 702 D 702
           +
Sbjct: 958 E 958



 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  AI ++ + +   +   +LL G  G GKT   +    +A+   R  
Sbjct: 624 FEEAFPYEETPDQLRAIKEIKEDMERPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDSRQV 683

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
            V+ P  ILA Q Y+ F   F  
Sbjct: 684 AVLVPTTILAQQHYNTFVERFSG 706


>gi|160878272|ref|YP_001557240.1| transcription-repair coupling factor [Clostridium phytofermentans
           ISDg]
 gi|160426938|gb|ABX40501.1| transcription-repair coupling factor [Clostridium phytofermentans
           ISDg]
          Length = 1179

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 101/507 (19%), Positives = 195/507 (38%), Gaps = 46/507 (9%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           + + I   +   L+ G   S K   +  + E +    +V+  N I A ++Y + K     
Sbjct: 17  IEQSIQKNQFPLLITGCIDSQKCHLIHALSEGIVCK-LVITYNDIKAKEIYEDLK--LYD 73

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV- 278
             V  +             P  D            I R R    ++LLER    VV+++ 
Sbjct: 74  RNVYLY-------------PAKDIIFYSADIHGNAIVRERMRILKNLLERKPMTVVATID 120

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
             +  +  ++  S  I+ +K   ++E + L   L+   Y+RQ      G F + G  I+I
Sbjct: 121 GGMDKLLPLDYLSDKIICIKEDSTIEIECLSEKLIHLGYERQGQVENPGEFAIRGGIIDI 180

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           +P   E+  +R+ ++G++++ I  F   + + I  V T  IY  S  +     L   +  
Sbjct: 181 YPL-TEEAPYRIELWGDEVDSIRTFDVGSQRSIERVSTAVIYPASEIILEPEALKNGLHK 239

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           +  E K  + +L  E +  EA R+ Q +    E LE      ++++Y R+       +  
Sbjct: 240 LNIEQKEYVGKLRGELKTEEAARIHQIVEEFKENLECLQGSLNLDSYIRFFY-----DKT 294

Query: 459 PTLFEYIPED-SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN-RPLRFE 516
            + F+Y   D S++F DE +    +   ++           E G+ LPS MD     +  
Sbjct: 295 CSFFDYFANDSSIIFADEPNRLAEKGEAVFTEFSESMVGRIEKGYILPSQMDVIYDYKEL 354

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
             N  R  ++++S               V Q+     +      +       E +  ++ 
Sbjct: 355 LANLSRRNSVLISTM----------DHKVMQLAAKKKVDITVKSVNPYNNNFEILIKDLQ 404

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              + G R++L   ++  A  L + L +  +   Y   +V  +            K +++
Sbjct: 405 NWKRNGYRVILLSGSRTRAARLAQDLRDNELPAIY-SEDVDRIPV----------KGEIV 453

Query: 637 VGINLLREGLDIPECGLVAILDADKEG 663
           V    +  G + P   LV I ++D  G
Sbjct: 454 VMHGSVHRGFEYPLIKLVIISESDIFG 480



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 76/186 (40%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    ++    +   P++        E + + IN    +G 
Sbjct: 777 VLTLTATPIPRTLHMSLVGIRDMSVLEEPPVDRLPIQTFVLEHNDEIIREAINRELARGG 836

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++T  +     +  V + H ++   +  +I+ +   G+ DVLV   +
Sbjct: 837 QVYYVHNRVNGLDEITNTIARLVPDANVAFAHGQMHEHQLEKIMFEFINGEIDVLVSTTI 896

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-- 699
           +  GLDI     + I +AD+ G L     L   +GR+ R   + ++   D + K +    
Sbjct: 897 IETGLDISNVNTMIIDNADQLG-LSQLYQLRGRVGRSNRTSFAFLMYKRDKLLKEVAEKR 955

Query: 700 --AIDE 703
             AI E
Sbjct: 956 LQAIKE 961


>gi|167747443|ref|ZP_02419570.1| hypothetical protein ANACAC_02163 [Anaerostipes caccae DSM 14662]
 gi|317471172|ref|ZP_07930543.1| transcription-repair coupling factor [Anaerostipes sp. 3_2_56FAA]
 gi|167652805|gb|EDR96934.1| hypothetical protein ANACAC_02163 [Anaerostipes caccae DSM 14662]
 gi|316901387|gb|EFV23330.1| transcription-repair coupling factor [Anaerostipes sp. 3_2_56FAA]
          Length = 1175

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 112/632 (17%), Positives = 230/632 (36%), Gaps = 53/632 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA--IVMAPNKILAAQLYSE 212
           A   Q+  G+ + +   L+ G T   K   ++ +    +R +  +++  ++  A +    
Sbjct: 10  AVFEQIKTGLENNQGPVLVSGCTDGAKAHLVSALRGKKKRGSYKVIVTADENKAKEWVEN 69

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
           ++ FF  +AV              Y P  D            I + R     S+++    
Sbjct: 70  YR-FFGEDAV--------------YFPAKDPLFYSADVHGNAIAKERLRGIESIIKGQGG 114

Query: 273 IVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           + V SV  +   +  +    +  V + +   V ++++        Y+R       G F V
Sbjct: 115 VFVLSVDALMDRVVPLAEIKKNRVMISLETEVSEQDITKKFTAMGYERTPFVEAAGEFAV 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++I+P    D  +R+ ++G +++ I  F   + + I  V+++ +Y  +  V     
Sbjct: 175 RGGIVDIYP-FTSDCPYRIELWGEEVDSIRSFDAQSQRSIEEVKSLTVYPATEIVLSEER 233

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           ++  +K I+ E +       K     +  RL +      E L        +E Y  Y   
Sbjct: 234 ISQGLKKIEAEYQDLKETFHKAFETDKEVRLTKEYQRIREELSELSMLIGVEGYLPYFYD 293

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
           R          +Y P+D+ ++VDE      +  G +        +  E G+ LP  MD  
Sbjct: 294 RL-----VCFLDYFPKDTAVYVDEPQHVEERGRGFFLEFTESMKSRLEAGYLLPGQMDTV 348

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
               E  N L    +   ++  S   E     + +     T        ++S     E +
Sbjct: 349 ACFEEALNRLLKQPVAFLSSLAS---EVKAAKVTDTFFIETKS------VQSYNNSFEQL 399

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             ++    ++  RIL+   +   A+ L E + +  + V Y           +   D+  G
Sbjct: 400 IKDLKRYQKKEYRILVVSPSVTRAKRLAEDMRDSGLTVTYD---------KKPSEDMVPG 450

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKE-GFLRSKTSLIQTIGRAARNVNSKVILYA 690
           +  +++    L+ G++ PE   V I ++D   G    +       G+  +  N   I   
Sbjct: 451 Q--IVITPGKLKSGIEYPETKWVLISESDIFSGRKEKRRKKAAFKGKGEKIKNFADISIG 508

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE-DAATTNISID 749
           D +            R  EK   +N + +    S++ K  + +  +    D      S +
Sbjct: 509 DYVVHEKHGVG--IYRGIEKITVNNVEKDYI--SIEYKGGDNLFILASALDQIAKYASAN 564

Query: 750 AQQLSLSK---KKGKAHLKSLRKQMHLAADNL 778
           A++  L+K    + K   K ++ Q+   A  L
Sbjct: 565 AKKPRLNKLGGNEWKKTTKRVKGQVRETAKEL 596



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 19/191 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      I +  I    L +PP + R+ +T V     E V + ++   
Sbjct: 779 VLSLSATPIPRTLHMSLIGIRDMSI----LEEPPHDRRAIQTYVMEYNEELVKEAVHREM 834

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++           ++T  L +   N +V + H +++  E   I+      + DVLV
Sbjct: 835 TRGGQVYYVYNRVNNIAEITSELQKLLPNAKVAFAHGQMRERELENIMMQFMEKEIDVLV 894

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA++ G L     L   +GR+ RN  + ++   DT+ K  
Sbjct: 895 STTIIETGLDIPNVNTMIIHDANQLG-LSQLYQLRGRVGRSNRNAFAFLMYKRDTLLK-- 951

Query: 698 QLAIDETTRRR 708
                ET  +R
Sbjct: 952 -----ETAEKR 957


>gi|255524039|ref|ZP_05391001.1| transcription-repair coupling factor [Clostridium carboxidivorans
           P7]
 gi|296186896|ref|ZP_06855297.1| transcription-repair coupling factor [Clostridium carboxidivorans
           P7]
 gi|255512326|gb|EET88604.1| transcription-repair coupling factor [Clostridium carboxidivorans
           P7]
 gi|296048610|gb|EFG88043.1| transcription-repair coupling factor [Clostridium carboxidivorans
           P7]
          Length = 1173

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/515 (16%), Positives = 210/515 (40%), Gaps = 58/515 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              ++  I   +    + G++ S + + +  V E + +P +V+  + + A +LY +   +
Sbjct: 16  FKSIISSIEKSKFPVGIFGLSESARGYLIDGVYEELDKPFLVLTHSDVEAKRLYEDLSLY 75

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
             +  V YF             P  +       +I+  +   R    R +L+    I+V+
Sbjct: 76  LTN--VYYF-------------PTKEVVFYNIYAISGDLRWERLKVIREMLKSGKKIIVT 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            +  +      V  Y      + I D ++ + L   L++  Y++ +I   +G F + G  
Sbjct: 121 CIETLASSYIPVNLYRNYTFNISIKDILDIENLKQKLIQCGYEKVEIIDGKGQFSIRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+     +  +R+ +FGN+++ I  F   + + I  V++I+I+     +    ++   
Sbjct: 181 IDIYSPIAAE-PYRIELFGNEVDSIRSFNLQSQRSIDKVKSIEIFPAKEMILDNESIEKG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ ++ +LK+   +L+K       + ++Q +  +LE L    + ++I+++  Y       
Sbjct: 240 LQGMESDLKLVCDKLKKRKDNDALENVQQEVKKNLESLRENWTFETIDSFLPYFY----- 294

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           +   +  EY  E   + +D+      ++  +Y        +  E G  L    +      
Sbjct: 295 DKTSSFLEY-TEGYFIILDDLQRCKGKLDSVYFEFEENYKSFLERGNILSKQSE------ 347

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV-------DPPVEIRSARTQV 568
                     ++++ +     LE+ + + ++ I + T ++          + + +   Q+
Sbjct: 348 ----------LLLNKSHVLESLEEKEVMTMDAIPKSTKILAPRSIINFSQITLHNYHGQM 397

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + +  +I     +G++I++   T+   E L   L + +I   Y           ++I D+
Sbjct: 398 DLLIQDIKDKKSKGVKIVILSGTRPRGERLVNTLRDNDIESSY----------KDVIHDI 447

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           + G+  +  G  L   G + PE  +  I D +  G
Sbjct: 448 QPGEVVITFGSQL--NGFEYPELKVCVISDKEVFG 480



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +I        PV+        + + D I     +G 
Sbjct: 778 VLTLSATPIPRTLHMSLVGVRDISVIETPPEERYPVQTYVVEYNEQLIRDAILRELNRGG 837

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++  Y+ +     R    H +++  E   II D    ++D+LV   +
Sbjct: 838 QVYFVYNRVENIKEMASYMAKLVPEARVAVAHGQMQERELENIIVDFMKNEYDILVATTI 897

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I D+DK G L     L   +GR  R     +    D I       +
Sbjct: 898 IETGMDIQNVNTMIIYDSDKMG-LSQLYQLRGRVGRTNRMAYCYLTYRKDKI-------L 949

Query: 702 DETTRRREKQLE 713
            E   +R K ++
Sbjct: 950 TEVAEKRLKAIK 961


>gi|498140|gb|AAA27703.1| ABC excision endonuclease subunit [Zymomonas mobilis]
 gi|1583684|prf||2121335A uvrB gene
          Length = 284

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 124/228 (54%), Positives = 159/228 (69%), Gaps = 4/228 (1%)

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             E    A  G R L+T LTKRMAEDLTEY+YE  ++VRYMHS+V+T+ERIE+IRDLRLG
Sbjct: 10  IFEAKKTAAAGWRSLVTTLTKRMAEDLTEYMYEAGLKVRYMHSDVETIERIELIRDLRLG 69

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
            +DVL+GINLLREGLDIPECGLVA+LDADKEGFLRS+TSLIQTIGRAARN   +VILY D
Sbjct: 70  VYDVLIGINLLREGLDIPECGLVAVLDADKEGFLRSETSLIQTIGRAARNAEGRVILYGD 129

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
            IT S+  A+ ET RRR KQ+  NK HNI P +VK ++ +++    + +++    +I+  
Sbjct: 130 KITGSMARAMAETERRRIKQIAWNKAHNITPATVKRQVDDIVGHFGVVNSSEAAATIENH 189

Query: 752 QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
                 K     +    K+M  AA NL FE+AA++RD + +LK     
Sbjct: 190 ----DPKVLARSISETEKEMLEAAANLEFEKAAQLRDVLHQLKRQELG 233


>gi|319648579|ref|ZP_08002793.1| mfd protein [Bacillus sp. BT1B_CT2]
 gi|317389346|gb|EFV70159.1| mfd protein [Bacillus sp. BT1B_CT2]
          Length = 1177

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 93/520 (17%), Positives = 190/520 (36%), Gaps = 46/520 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              ++ G++   K QLL G++GS ++   A + +  +RP  ++  N   A ++  +    
Sbjct: 14  FKSIVNGLNEGLKEQLLAGLSGSARSLFTAALTKETRRPVFLITHNLYQAQKITDDLTGL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                           QP    P  +    + +  + ++   R      L      IVV+
Sbjct: 74  IKD-------------QPVLLYPVNELISSEIAVASPELRSQRLDVLNRLASGETPIVVA 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
             + +   +  VE +    + ++ G  ++ ++LL  LV+  Y+R D+    G F + G  
Sbjct: 121 PAAAVRRMLPPVEVWQNSQIHIETGRDIDPEQLLQKLVQMGYERTDMVAAPGEFSIRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+++ S  E+   R+ +F  +++ I  F     + +   + + I      +        A
Sbjct: 181 IDVY-SLTEENPVRIELFDTEVDSIRIFNTDDQRSLETRDEVTIGPAKELIVRDEDRQRA 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ I + L      L+K     + + L+Q I  D E L+     Q +  Y  Y       
Sbjct: 240 LEQIDQGLA---NSLKKLKLDKQKEILDQNIAEDKERLKEGHIGQEMVKYLSYFY----- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E P +L +Y P+++LL +DE          + + +     +L E G  L     + P   
Sbjct: 292 EKPASLLDYFPKNTLLILDEISRIHEMEDQLQKEEAEWITSLLEEGKILHDTSMSFPFHS 351

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                 RP             L   Q    + I+  +        ++S   Q+  + +EI
Sbjct: 352 LISKQSRPILYYSLF------LRHVQHTSPQNIVNVSSKQ-----MQSFHGQMNVLKNEI 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +     +    +K   E L   L + +I               +  +D  L +  +
Sbjct: 401 ERFKKSKYTTVFLGDSKERVEKLASVLSDYDIEA------------AQADQDAALAQGQI 448

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            +    L+ G ++P   L  I + +       K +  Q +
Sbjct: 449 YIMEGGLQSGFELPMIKLAVITEEELFKKRVKKQARKQKL 488



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 66/181 (36%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   E +     + +V Y H ++   E   ++ +   G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKAEEISMLVPDAKVTYAHGKMTENELESVMLNFLEGESDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DADK G  +    L Q  GR  R+       +     K +    
Sbjct: 894 IETGVDIPNVNTLIVFDADKMGLSQ----LYQLRGRVGRSNRVAYAYFTYRKDKVLTEVA 949

Query: 702 D 702
           +
Sbjct: 950 E 950


>gi|52078550|ref|YP_077341.1| transcription-repair coupling factor [Bacillus licheniformis ATCC
           14580]
 gi|52783912|ref|YP_089741.1| hypothetical protein BLi00068 [Bacillus licheniformis ATCC 14580]
 gi|52001761|gb|AAU21703.1| transcription-repair coupling factor [Bacillus licheniformis ATCC
           14580]
 gi|52346414|gb|AAU39048.1| Mfd [Bacillus licheniformis ATCC 14580]
          Length = 1177

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 93/520 (17%), Positives = 190/520 (36%), Gaps = 46/520 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              ++ G++   K QLL G++GS ++   A + +  +RP  ++  N   A ++  +    
Sbjct: 14  FKSIVNGLNEGLKEQLLAGLSGSARSLFTAALTKETRRPVFLITHNLYQAQKITDDLTGL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                           QP    P  +    + +  + ++   R      L      IVV+
Sbjct: 74  IKD-------------QPVLLYPVNELISSEIAVASPELRSQRLDVLNRLASGETPIVVA 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
             + +   +  VE +    + ++ G  ++ ++LL  LV+  Y+R D+    G F + G  
Sbjct: 121 PAAAVRRMLPPVEVWQNSQIHIETGRDIDTEQLLQKLVQMGYERTDMVAAPGEFSIRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+++ S  E+   R+ +F  +++ I  F     + +   + + I      +        A
Sbjct: 181 IDVY-SLTEENPVRIELFDTEVDSIRIFNTDDQRSLETRDEVTIGPAKELIVRDEDRQRA 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ I + L      L+K     + + L+Q I  D E L+     Q +  Y  Y       
Sbjct: 240 LEQIDQGLA---NSLKKLKLDKQKEILDQNIAEDKERLKEGHIGQEMVKYLSYFY----- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E P +L +Y P+++LL +DE          + + +     +L E G  L     + P   
Sbjct: 292 EKPASLLDYFPKNTLLILDEISRIHEMEDQLQKEEAEWITSLLEEGKILHDTSMSFPFHS 351

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                 RP             L   Q    + I+  +        ++S   Q+  + +EI
Sbjct: 352 LISKQSRPILYYSLF------LRHVQHTSPQNIVNVSSKQ-----MQSFHGQMNVLKNEI 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +     +    +K   E L   L + +I               +  +D  L +  +
Sbjct: 401 ERFKKSKYTTVFLGDSKERVEKLASVLSDYDIEA------------AQADQDAALAQGQI 448

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            +    L+ G ++P   L  I + +       K +  Q +
Sbjct: 449 YIMEGGLQSGFELPMIKLAVITEEELFKKRVKKQARKQKL 488



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 66/181 (36%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   E +     + +V Y H ++   E   ++ +   G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKAEEISMLVPDAKVTYAHGKMTENELESVMLNFLEGESDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DADK G  +    L Q  GR  R+       +     K +    
Sbjct: 894 IETGVDIPNVNTLIVFDADKMGLSQ----LYQLRGRVGRSNRVAYAYFTYRKDKVLTEVA 949

Query: 702 D 702
           +
Sbjct: 950 E 950


>gi|157690837|ref|YP_001485299.1| transcription-repair coupling factor [Bacillus pumilus SAFR-032]
 gi|157679595|gb|ABV60739.1| transcription-repair coupling factor [Bacillus pumilus SAFR-032]
          Length = 1177

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 99/553 (17%), Positives = 206/553 (37%), Gaps = 53/553 (9%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q      +  G+    K QLL G++GS ++   A + + ++RP  ++  N   A ++  +
Sbjct: 10  QSDDFQSIFNGLKEGLKEQLLAGLSGSVRSLFTAAISDELKRPMFIVTHNLYQAQKVTDD 69

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +     +V  +             P  +    + +  + ++   R      L    + 
Sbjct: 70  LASVMSDRSVLLY-------------PVNELIASEIAVASPELRAQRLDVLNRLANGENP 116

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           I+V+  + +   +  VE + +  + LK+G+ ++ +     LV+  Y R  +    G F V
Sbjct: 117 IIVTPAAAVRRMLPPVELWKESQIHLKLGEEIDLEAFSKQLVQIGYDRTSMVAAPGDFSV 176

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I+I+ S  ED   R+ +F  +++ I  F+  T + +  ++ IKI      +   P 
Sbjct: 177 RGGIIDIY-SLTEDHPIRIELFDTEVDSIRTFHSDTQRSLETLQEIKIGPAKELIVRGPE 235

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
              A++ + + L   L +   +    + + L Q IT D E L      Q +  Y  Y   
Sbjct: 236 RVRAIEQLDQGLANSLKKFNSD---QQKELLHQHITADREKLLEGIVTQEMTKYLSYFY- 291

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               E P +L +Y  +D+++ +DE          + + +     +L E G  L     + 
Sbjct: 292 ----EKPASLLDYTSQDTIIILDEISRIQEMEEQLEQEEADWTISLLEEGNIL----HDL 343

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWE--LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
            L F  +  L       S +   +   L   Q    + I+  +        +++   Q+ 
Sbjct: 344 TLSFP-FQQLINQQ---SRSILYYSLFLRHVQQTNPQNIVNVSSKQ-----MQNFHGQMN 394

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +  EI    +Q   ++     +   + L+  L++ +I               +   +L 
Sbjct: 395 VLASEIERYKKQQYTVVFLGADEERTDKLSSVLHDYDIEAAL----------AKPDAELV 444

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKV 686
            G+  +L     L+ G ++P   +  I + +       K +  Q +    R       +V
Sbjct: 445 SGQVYIL--QGELQTGFELPLSKIAVITEGELFKKRVKKQARKQKLTNAERIKSYSELQV 502

Query: 687 ILYADTITKSIQL 699
             Y   I   I  
Sbjct: 503 GDYVVHINHGIGK 515



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 72/198 (36%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +     + +V Y H ++   E   ++ +   G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDAKVSYAHGKMSENELESVMINFLEGESDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DADK G  +    L Q  GR  R+       +     K     +
Sbjct: 894 IETGVDIPNVNTLIVHDADKMGLSQ----LYQLRGRVGRSNRVAYAYFTYRKDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963


>gi|225028227|ref|ZP_03717419.1| hypothetical protein EUBHAL_02499 [Eubacterium hallii DSM 3353]
 gi|224954539|gb|EEG35748.1| hypothetical protein EUBHAL_02499 [Eubacterium hallii DSM 3353]
          Length = 1187

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 97/495 (19%), Positives = 187/495 (37%), Gaps = 45/495 (9%)

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
             +L G   S K   +  + E       V+   +  A +LY +  +FF  N V Y     
Sbjct: 41  PIVLNGCVDSQKAHFIPNLGEDFPCR-FVLTYKEEKAKELYQDL-SFFDPNTVLY----- 93

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVE 288
                    P  D         +  I+R R    + ++E     +V+ +      +   E
Sbjct: 94  ---------PSRDVLFYSADVHSNHIERQRMDILKKIVEGKPLTIVACLDVFMEKMIPFE 144

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            + +  + +     ++   L   L +  Y+   +    G F + G  I+IFP   E++  
Sbjct: 145 EFKEHCLTIDFESIIDTDALKLKLSELGYENSGLVEAPGQFGIRGGIIDIFPL-TEELPV 203

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+ ++G++++ I  F   T + +  ++ +++Y  +  +  R  +  A++ +KEE K +  
Sbjct: 204 RIELWGDEVDSIRSFDTETQRSVEKLDEVQVYPATEMILSRNKIGEAVRRMKEEYKKQEE 263

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
             +K  R  E +RL +      E L + G+ +  E    Y       E   +  EY+PE+
Sbjct: 264 AFKKRKRFAEKERLRKMTVRTEEELLSFGTAEGSEALLSYFY-----EKTVSFLEYLPEN 318

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           +L F+DE H  + +        F    +  E G+ LP   D   L F  +  +    +V 
Sbjct: 319 TLFFIDEPHRVLEKGKTYEEEFFLCMQSRLEGGYVLPGQAD---LLF-GYEEILSKVMV- 373

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEINLAAQQGLRILL 587
               G   L     I      +P    D   + I S     + +  ++    +Q  RILL
Sbjct: 374 ----GPLIL-LSSVIQDYAFYKPKTTCDIEAKSIFSYNNSFDQLIKDLEHWKKQNYRILL 428

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
              +   A+ L E + +  +   +           +  R +  G+  ++V    L  G +
Sbjct: 429 LSSSTTRAKRLAENIRDYGLLAYFA---------ADFDRTIAPGE--IMVASGRLGNGFE 477

Query: 648 IPECGLVAILDADKE 662
            P    V + + D  
Sbjct: 478 YPTLKFVVLSEKDIF 492



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 18/192 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      I +  +    L  PPV+ R+ +T V     E V + I    
Sbjct: 791 VLALSATPIPRTLHMSLAGIRDMSV----LEVPPVDRRAIQTYVMEYNEELVREAIEREL 846

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++          +++   L     N  V Y H ++   +   I+      + DVLV
Sbjct: 847 GRGGQVYYVYNRVNNIDEVAAGLQRLLPNATVEYAHGQMGERQLETIMSGFINKEIDVLV 906

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA   G L     L   +GR+ R   + ++   ++I K  
Sbjct: 907 STTIIETGLDIPNVNTMIIQDAQLFG-LSQLYQLRGRVGRSNRTAYAFLMYRRNSILK-- 963

Query: 698 QLAIDETTRRRE 709
               +E  +R +
Sbjct: 964 ----EEAEKRLK 971


>gi|307265094|ref|ZP_07546654.1| transcription-repair coupling factor [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919892|gb|EFN50106.1| transcription-repair coupling factor [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 1169

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 90/522 (17%), Positives = 214/522 (40%), Gaps = 42/522 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
             I  + + +  R+   L  G+T S K      ++    +  +V+AP+++ A ++Y +  
Sbjct: 10  KEIKTIEEFLQQRKGPILAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEARKIYEDLY 69

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +F   NA              +  P+ +    K  + ++++   R    + L E +   V
Sbjct: 70  SFNFGNA--------------SLFPKREALFYKIDAASQEVVSQRLQVIKKLSEGSPHAV 115

Query: 275 VSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S+    G +  ++ + +     K+GD+V  +E++ +LV   Y+R  +   +G F V G
Sbjct: 116 VTSIDAAVGKLIPMDLFKKYQFVFKLGDTVNLEEVIKNLVTMGYERVQMVEGKGQFSVRG 175

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I++F S  E+  +R+ +F ++I+ I  F  +T + + N++ I I+  + ++     + 
Sbjct: 176 GIIDVF-SPTEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEAEHIK 234

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             +  +   L   L +++K    +  ++L+Q+    +E +  +   ++I     Y     
Sbjct: 235 KGISAVSNYLNSYLSKIKKSKSGIA-EKLQQKFEEIMEEITESKRVENIHELIDYFY--- 290

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             +   ++ +Y+ E++++ +DES     +++ +          L E G  LP        
Sbjct: 291 --DDVYSIVDYMGEEAVIILDESSRIKQRVNNLQMEFNENFKVLLEKGEVLPEQSKLFFD 348

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
             E    ++   +++  T    + E     IV  + R          +     +++ + D
Sbjct: 349 YEEILKRVKNNFLLIMNTLAKPDNELQPQTIVNFVSRS---------MHPFHGKMDILVD 399

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++      G ++LL    +  A  L + L   NI    +          +   D++ G+ 
Sbjct: 400 DLKYYKNAGYKVLLLSGNQERARILKDTLDSFNIDTVVI---------KDSEYDIQKGQ- 449

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            V++    + +G +  +     I D +  G  +     ++  
Sbjct: 450 -VVIYPASVSKGFEYVDAKFAVISDGEIFGQTKRSKKTVKIR 490



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      I +  ++        PVE        E + D I     +G 
Sbjct: 775 VLTLSATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVMEFNEELIKDAILREIGRGG 834

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E +   + +     RV   H +++  +  +++ D   G++DVLV   +
Sbjct: 835 QVYFVYNRVNGIEKMASLVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + + DADK G  +    L Q  GR  R+       +     K +    
Sbjct: 895 IETGLDIPNVNTIIVYDADKLGLSQ----LYQLRGRVGRSNRLAYAYFTYRKDKVLSEVA 950

Query: 702 D 702
           +
Sbjct: 951 E 951


>gi|326390842|ref|ZP_08212394.1| transcription-repair coupling factor [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993101|gb|EGD51541.1| transcription-repair coupling factor [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 1169

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 90/522 (17%), Positives = 214/522 (40%), Gaps = 42/522 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
             I  + + +  R+   L  G+T S K      ++    +  +V+AP+++ A ++Y +  
Sbjct: 10  KEIKTIEEFLQQRKGPILAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEARKIYEDLY 69

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +F   NA              +  P+ +    K  + ++++   R    + L E +   V
Sbjct: 70  SFNFGNA--------------SLFPKREALFYKIDAASQEVVSQRLQVIKKLSEGSPHAV 115

Query: 275 VSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S+    G +  ++ + +     K+GD+V  +E++ +LV   Y+R  +   +G F V G
Sbjct: 116 VTSIDAAVGKLIPMDLFKKYQFVFKLGDTVNLEEVIKNLVTMGYERVQMVEGKGQFSVRG 175

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I++F S  E+  +R+ +F ++I+ I  F  +T + + N++ I I+  + ++     + 
Sbjct: 176 GIIDVF-SPTEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEAEHIK 234

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             +  +   L   L +++K    +  ++L+Q+    +E +  +   ++I     Y     
Sbjct: 235 KGISAVSNYLNSYLSKIKKSKSGIA-EKLQQKFEEIMEEITESKRVENIHELIDYFY--- 290

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             +   ++ +Y+ E++++ +DES     +++ +          L E G  LP        
Sbjct: 291 --DDVYSIVDYMGEEAVIILDESSRIKQRVNNLQMEFNENFKVLLEKGEVLPEQSKLFFD 348

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
             E    ++   +++  T    + E     IV  + R          +     +++ + D
Sbjct: 349 YEEILKRVKNNFLLIMNTLAKPDNELQPQTIVNFVSRS---------MHPFHGKMDILVD 399

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++      G ++LL    +  A  L + L   NI    +          +   D++ G+ 
Sbjct: 400 DLKYYKNAGYKVLLLSGNQERARILKDTLDSFNIDTVVI---------KDSEYDIQKGQ- 449

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            V++    + +G +  +     I D +  G  +     ++  
Sbjct: 450 -VVIYPASVSKGFEYVDAKFAVISDGEIFGQTKRSKKTVKIR 490



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      I +  ++        PVE        E + D I     +G 
Sbjct: 775 VLTLSATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVMEFNEELIKDAILREIGRGG 834

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E +   + +     RV   H +++  +  +++ D   G++DVLV   +
Sbjct: 835 QVYFVYNRVNGIEKMASLVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + + DADK G  +    L Q  GR  R+       +     K +    
Sbjct: 895 IETGLDIPNVNTIIVYDADKLGLSQ----LYQLRGRVGRSNRLAYAYFTYRKDKVLSEVA 950

Query: 702 D 702
           +
Sbjct: 951 E 951


>gi|194018017|ref|ZP_03056624.1| transcription-repair coupling factor [Bacillus pumilus ATCC 7061]
 gi|194010354|gb|EDW19929.1| transcription-repair coupling factor [Bacillus pumilus ATCC 7061]
          Length = 1177

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 98/553 (17%), Positives = 206/553 (37%), Gaps = 53/553 (9%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q      +  G+    K QLL G++GS ++   A + + ++RP  ++  N   A ++  +
Sbjct: 10  QSDDFQSIFNGLKEGLKEQLLAGLSGSVRSLFTAAISDELKRPMFIVTHNLYQAQKVTDD 69

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +     +V  +             P  +    + +  + ++   R      L    + 
Sbjct: 70  LASVMSDRSVLLY-------------PVNELIASEIAVASPELRAQRLDVLNRLANGENP 116

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           I+V+  + +   +  VE + +  + LK+G+ ++ +     LV+  Y R  +    G F V
Sbjct: 117 IIVTPAAAVRRMLPPVELWKESQIHLKLGEEIDLEAFSKQLVQIGYDRTSMVAAPGDFSV 176

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I+I+ S  ED   R+ +F  +++ I  F+  T + +  ++ IKI      +   P 
Sbjct: 177 RGGIIDIY-SLTEDHPIRIELFDTEVDSIRTFHSDTQRSLETLQEIKIGPAKELIVRGPE 235

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
              A++ + + L   L +   +    + + L Q I+ D E L      Q +  Y  Y   
Sbjct: 236 RVRAIEQLDQGLAKSLKKFNSD---QQKELLHQHISADREKLLEGIVTQEMTKYLSYFY- 291

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               E P +L +Y  +D+++ +DE          + + +     +L E G  L     + 
Sbjct: 292 ----EKPASLLDYTSQDTIIILDEISRIQEMEEQLEQEEADWTISLLEEGNIL----HDL 343

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWE--LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
            L F  +  L       S +   +   L   Q    + I+  +        +++   Q+ 
Sbjct: 344 SLSFP-FQQLINQQ---SRSILYYSLFLRHVQQTNPQNIVNVSSKQ-----MQNFHGQMN 394

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +  EI    +Q   ++     +   + L+  L++ +I               +   +L 
Sbjct: 395 VLASEIERYKKQQYTVVFLGADEERTDKLSSVLHDYDIEAAL----------AKPAAELV 444

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKV 686
            G+  +L     L+ G ++P   +  I + +       K +  Q +    R       +V
Sbjct: 445 SGQVYIL--QGELQTGFELPLSKIAVITEGELFKKRVKKQARKQKLTNAERIKSYSELQV 502

Query: 687 ILYADTITKSIQL 699
             Y   I   I  
Sbjct: 503 GDYVVHINHGIGK 515



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 72/198 (36%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +     + +V Y H ++   E   ++ +   G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDAKVSYAHGKMSENELESVMINFLEGESDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DADK G  +    L Q  GR  R+       +     K     +
Sbjct: 894 IETGVDIPNVNTLIVHDADKMGLSQ----LYQLRGRVGRSNRVAYAYFTYRKDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963


>gi|260589951|ref|ZP_05855864.1| transcription-repair coupling factor [Blautia hansenii DSM 20583]
 gi|260539758|gb|EEX20327.1| transcription-repair coupling factor [Blautia hansenii DSM 20583]
          Length = 1182

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 96/524 (18%), Positives = 196/524 (37%), Gaps = 54/524 (10%)

Query: 153 QP----AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA-------IVMAP 201
           QP        ++ + +   E +  L G   + K   M  + EAM++         +++A 
Sbjct: 6   QPLENLKEFEEITQKLPKNEGILQLSGCVETQKAHIMYGLFEAMKKKTGQEKANCLIIAE 65

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           N + A +LY +++    +  V ++             P  D    +       + + R  
Sbjct: 66  NDLKAKELYEDYR--LYNREVMFY-------------PAKDLIFFEADVHGNLLTKERMK 110

Query: 262 ATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
              +LLE+    V++S+  C+  +  +E+  + ++  +    ++  +L   L+   Y++ 
Sbjct: 111 VLAALLEKKGVTVITSMGGCMDYLLPLETIEKHVLHFQSDSPLDMDKLKKQLLGMGYEKN 170

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                 G F   G  I+IFP   ED   R+ ++G++I+ I  F   + + I N++ I IY
Sbjct: 171 AQAEAPGQFSFRGGIIDIFPL-TEDNPVRIELWGDEIDSIRSFDAESQRSIENLDEITIY 229

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +  +     L   +K I+++    + +        EA RL+Q +T  LE L       
Sbjct: 230 PAAEMLLSDEVLKKGIKKIQKDRDAAVQKFRDAFLTEEAGRLKQVVTETLENLTEFHDFS 289

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP-EDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           + E++ RY           T  +Y   E++L+ +DE++  + Q   +            E
Sbjct: 290 AAEHFLRYFYK-----DVVTFTDYFDTENTLILLDETNRLLEQAQAVETEFRESMEHRLE 344

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
            G+ L    D      +           VS      E  +    I EQ            
Sbjct: 345 KGYLLAGQTDLLISTRQI-QQKINRKNCVSLCTI--EQHKGDWDITEQYYITAKS----- 396

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +       E +  ++    ++G  +LL   ++  +  L E L    +   Y        
Sbjct: 397 -VSPYNNSFELLVKDLKRFKKEGYGVLLLSGSRTRSARLAEDLRNEELNSFYT------- 448

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
              ++ R +  G+  ++      ++G + P    V I ++D  G
Sbjct: 449 --EDMDRVIEPGE--IMTAFGHAKKGFEYPLIKFVVITESDIFG 488



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 71/181 (39%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      I +  ++    +   P++        E V + I+    +G 
Sbjct: 785 VLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDRMPIQTYVMEYNEEMVREAISRELARGG 844

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++T  + +      V + H +++  +  +I+     G+ DVLV   +
Sbjct: 845 QVYYVYNRVNDIDEVTNRVAKLVPEANVAFAHGQMQEHQLEKIMYSFINGEIDVLVSTTI 904

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDI     + I DAD+ G  +    L Q  GR  R+  +          K ++   
Sbjct: 905 IETGLDISNANTMIIHDADQMGLSQ----LYQLRGRVGRSNRTAYAFLMYKKNKMLKEVA 960

Query: 702 D 702
           +
Sbjct: 961 E 961


>gi|309807260|ref|ZP_07701231.1| helicase C-terminal domain protein [Lactobacillus iners LactinV
           03V1-b]
 gi|308166351|gb|EFO68559.1| helicase C-terminal domain protein [Lactobacillus iners LactinV
           03V1-b]
          Length = 211

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 118/211 (55%), Positives = 153/211 (72%), Gaps = 2/211 (0%)

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +T LTK+M+EDLT+YL E  I+V+Y+HSE+KTLER++IIRDLRLGKFDVLVGINLLREG+
Sbjct: 1   MTTLTKKMSEDLTDYLKELGIKVQYLHSEIKTLERMKIIRDLRLGKFDVLVGINLLREGI 60

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           D+PE  LVAILDADKEGFLRS   L+Q +GRAARN N KVI+YAD IT S+Q AID T R
Sbjct: 61  DVPEVSLVAILDADKEGFLRSTRPLVQMMGRAARNENGKVIMYADHITDSMQAAIDVTER 120

Query: 707 RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS--IDAQQLSLSKKKGKAHL 764
           RR  Q+  N+KH+I P+++ + I ++I      D    +I+   D     LS K+ +  +
Sbjct: 121 RRNIQMLFNQKHHIIPKTIVKPIRDIISHTKDVDQKDKHINDFSDLNFDELSAKQKEQMI 180

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +L +QM +AA  L+FE AA +RD I  LK 
Sbjct: 181 INLTEQMKIAAQKLDFETAATLRDAIIDLKK 211


>gi|331084270|ref|ZP_08333375.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401805|gb|EGG81382.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 1182

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 96/524 (18%), Positives = 196/524 (37%), Gaps = 54/524 (10%)

Query: 153 QP----AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA-------IVMAP 201
           QP        ++ + +   E +  L G   + K   M  + EAM++         +++A 
Sbjct: 6   QPLENLKEFEEITQKLPKNEGILQLSGCVETQKAHIMYGLFEAMKKKTGQEKANCLIIAE 65

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           N + A +LY +++    +  V ++             P  D    +       + + R  
Sbjct: 66  NDLKAKELYEDYR--LYNREVMFY-------------PAKDLIFFEADVHGNLLTKERMK 110

Query: 262 ATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
              +LLE+    V++S+  C+  +  +E+  + ++  +    ++  +L   L+   Y++ 
Sbjct: 111 VLAALLEKKGVTVITSMGGCMDYLLPLETIEKHVLHFQSDSPLDMDKLKKQLLGMGYEKN 170

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                 G F   G  I+IFP   ED   R+ ++G++I+ I  F   + + I N++ I IY
Sbjct: 171 AQAEAPGQFSFRGGIIDIFPL-TEDNPVRIELWGDEIDSIRSFDAESQRSIENLDEITIY 229

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +  +     L   +K I+++    + +        EA RL+Q +T  LE L       
Sbjct: 230 PAAEILLSDEVLKKGIKKIQKDRDAAVQKFRDAFLTEEAGRLKQVVTETLENLTEFHDFS 289

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIP-EDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           + E++ RY           T  +Y   E++L+ +DE++  + Q   +            E
Sbjct: 290 AAEHFLRYFYK-----DVVTFTDYFDTENTLILLDETNRLLEQAQAVETEFRESMEHRLE 344

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
            G+ L    D      +           VS      E  +    I EQ            
Sbjct: 345 KGYLLAGQTDLLISTRQI-QQKINRKNCVSLCTI--EQHKGDWDITEQYYITAKS----- 396

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +       E +  ++    ++G  +LL   ++  +  L E L    +   Y        
Sbjct: 397 -VSPYNNSFELLVKDLKRFKKEGYGVLLLSGSRTRSARLAEDLRNEELNSFYT------- 448

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
              ++ R +  G+  ++      ++G + P    V I ++D  G
Sbjct: 449 --EDMDRVIEPGE--IMTAFGHAKKGFEYPLIKFVVITESDIFG 488



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 71/181 (39%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      I +  ++    +   P++        E V + I+    +G 
Sbjct: 785 VLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDRMPIQTYVMEYNEEMVREAISRELARGG 844

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++T  + +      V + H +++  +  +I+     G+ DVLV   +
Sbjct: 845 QVYYVYNRVNDIDEVTNRVAKLVPEANVAFAHGQMQEHQLEKIMYSFINGEIDVLVSTTI 904

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDI     + I DAD+ G  +    L Q  GR  R+  +          K ++   
Sbjct: 905 IETGLDISNANTMIIHDADQMGLSQ----LYQLRGRVGRSNRTAYAFLMYKKNKMLKEVA 960

Query: 702 D 702
           +
Sbjct: 961 E 961


>gi|295093547|emb|CBK82638.1| transcription-repair coupling factor [Coprococcus sp. ART55/1]
          Length = 1188

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 95/515 (18%), Positives = 190/515 (36%), Gaps = 45/515 (8%)

Query: 159 QLLKGIHSREKVQLLLGVTGSG--KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +L + + S +    + G TG G  + F M           +++  N   A +LYS+ K  
Sbjct: 17  ELKEWLASGDGFVNVTGTTGEGTDRVFMMQG-FGDDASVRLILTYNDRRAEELYSDMK-- 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           F    V  +             P  D            I R R    R L     C +++
Sbjct: 74  FYGRDVYMY-------------PAKDILFFSADVHGNAITRRRMEVLRRLATGEPCTIIA 120

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +V  +Y  I ++    + ++ +    S++  EL   LV   Y++ D     G F + G  
Sbjct: 121 TVDAMYDKIPALSYMKKYVINIHAAQSLDLDELKGKLVDLGYEKTDSVEEPGQFAIRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++IFP   E+  +R+ M+ ++++ I  F   + + I NV+ + IY     V  +  ++  
Sbjct: 181 VDIFPL-TEECPYRIDMWDDEVDTIKTFDAESQRSIENVDELVIYPAGEMVLSKERIDRG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +  ++ ELK    +L+   +     R++  I    E L    +   +++Y  Y       
Sbjct: 240 IHRLEAELKPYAKKLKDSFQTEAYARIKGEIATLKEQLTEFSAIYGVDSYVDYFY----- 294

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
               +L + +PED+ +F+DE+     +  G  +          E G+ LP  M       
Sbjct: 295 SDTVSLVDCLPEDAYIFIDETKKVTEKADGSEKSFLSSLTHRLEGGYILPGQMKVLFTYD 354

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           +     R   +V                  +++     +     E+ S R   + +  +I
Sbjct: 355 DVLEKCRRYKVVGF---------DSFVGEDDRVKYAHRVEIESREVHSYRNNFDALVTDI 405

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    +L    +   A+ + + L + ++   Y+          +  + L   +  V
Sbjct: 406 KKWKKDKYSVLFVSPSSVGAKRMVDNLMDNDVICHYL---------NDPDKALAAREMAV 456

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           +     LR G  IPE  L+ + + D      S + 
Sbjct: 457 M--PGRLRAGFMIPEMKLIVVSEGDVFSSKTSHSQ 489



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +     + L +PPV+ R  +T V     E   + I    
Sbjct: 782 VLTLTATPIPRTLHMSLVGIRDM----SLLEEPPVDRRPIQTYVMEYDRELAREAIAREL 837

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNI--RVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E   + +        V + H ++      +I+      + DVLV
Sbjct: 838 ARHGQVYYVYNRVEGIERFADDVRSLVPYANVEFAHGQMDGRTLEDIMYRFNKKEIDVLV 897

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA+  G  +    L Q  GR  R+  S          K  
Sbjct: 898 CTTIIETGLDIPNANTIIIHDANLFGLAQ----LYQLRGRVGRSDRSAFAFMFYRRNKM- 952

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              I E   +R + ++      
Sbjct: 953 ---ISEVAEKRLRAIKEYTDLG 971



 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 8/126 (6%)

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           +   I+   +    G     V IR+A   V D      L          T+L ++  E  
Sbjct: 648 ESHKIMDRLVCGDVGFGKTEVAIRAAFKAVGDSKQVAYLVP-------TTILAEQHYETF 700

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAIL 657
           TE + +  + VR +       E    +R+L+ GK D+++G + LL + ++    GL+ I 
Sbjct: 701 TERMKDYPVTVRLLCRFCTQKEIKSTLRELKEGKVDIVIGTHRLLSKDVEFKNLGLLIID 760

Query: 658 DADKEG 663
           +  + G
Sbjct: 761 EEQRFG 766


>gi|145629306|ref|ZP_01785105.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21]
 gi|144978809|gb|EDJ88532.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21]
          Length = 217

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 118/217 (54%), Positives = 154/217 (70%), Gaps = 9/217 (4%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAEDLT+YL E  IRVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLDIPE  L
Sbjct: 1   MAEDLTDYLDEHGIRVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSL 60

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           VAILDADKEGFLRS+ SLIQTIGRAARN+N K ILYAD+ITKS++ AI ET RRREKQ +
Sbjct: 61  VAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYADSITKSMEKAITETNRRREKQTK 120

Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ---------QLSLSKKKGKAHL 764
           +N++H I PQ++ +K+ E++D     +          +             + K+ +  +
Sbjct: 121 YNEEHGIVPQALNKKVGELLDIGQGANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQQI 180

Query: 765 KSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQG 801
           K L +QM+  A +L FE+AA IRD++ +L+    F  
Sbjct: 181 KKLEQQMYKFAQDLEFEKAAAIRDQLHQLREQFVFDN 217


>gi|182420058|ref|ZP_02951292.1| transcription-repair coupling factor [Clostridium butyricum 5521]
 gi|237669507|ref|ZP_04529487.1| transcription-repair coupling factor [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182376095|gb|EDT73682.1| transcription-repair coupling factor [Clostridium butyricum 5521]
 gi|237654951|gb|EEP52511.1| transcription-repair coupling factor [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 1166

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 87/515 (16%), Positives = 203/515 (39%), Gaps = 61/515 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              +L  I++      + G+  SG+ +T+  + E + R  +++  + + A  +Y +    
Sbjct: 16  FENILGSINNERYPIGIYGIAESGRVYTIDSIFENIDRSMVIVTQSDMEAKNIYEDL--L 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              N V YF             P  +       +I+  +   R      +L++   I+V+
Sbjct: 74  LYTNDVHYF-------------PAKEMVFYNIDAISGDLRWARLKVINEILKKKKKIIVT 120

Query: 277 SVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           S+       +    ++   ++ K  D +   E+   L++  Y+R ++   +G F + G  
Sbjct: 121 SIDAFSARYTPHKLFADYTMKFKESDEINLIEVSKKLIQSGYERVEMVEGKGQFALRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +++FP       +R+ +FG++I+ I  F   + + I  V+ I+++     +    T++  
Sbjct: 181 LDVFP-TCSAYPYRIELFGDEIDSIRTFNTESQRSIDKVKKIEVFPAKEIIITDETISLG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
            + +K+E        + +      ++L   +  +LE LE T + ++I++Y  Y       
Sbjct: 240 KEKLKKEFD---NISKSDTDSARVEKLRNILNKNLESLEETSTFETIDSYLPYFCKETE- 295

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
               +LF+Y+ +D L  +D+      ++   Y          ++ G   P   +      
Sbjct: 296 ----SLFDYL-KDCLFIIDDVQRCEGKLDSTYLEFEENFTAFSQRGDIFPKQGE------ 344

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR-------TQV 568
                     +++S        +  + + ++ +++     +P   +  +         Q+
Sbjct: 345 ----------LLISKEEVIESFKDKKVVFLDGLVKKNSWFNPYTTVNISERTLNNYQGQL 394

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + + DEI+    QG +I++   T+   E L   L +R I   Y           + + ++
Sbjct: 395 DLLIDEISDKKNQGYKIVILSGTRARGERLVGTLRDRGIESSY----------KDTVDNI 444

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           + G+  +  G  L   G   PE  +  I D +  G
Sbjct: 445 QYGEVVITFGNQL--HGFQYPEYKVCVISDKEVFG 477



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 68/178 (38%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +I        PV+        + + D I     +G 
Sbjct: 776 VLTLSATPIPRTLHMSLSGVRDISVIETPPEERYPVQTYVVEQNDQLIRDAILREIGRGG 835

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + + +Y+       +V  +H ++   +  + + +     ++VLV   +
Sbjct: 836 QVYFVYNRVENIDAIAKYVQNLVPESKVGVIHGQMAERQLEQEMFNFMDQTYNVLVCTTI 895

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DI     + + DADK G L     L   +GR+ R   + ++   D I   +  
Sbjct: 896 IETGMDIQNVNTIIVYDADKMG-LSQLYQLRGRVGRSNRIAYAYLLYTKDKILTEVAE 952


>gi|266619807|ref|ZP_06112742.1| transcription-repair coupling factor [Clostridium hathewayi DSM
           13479]
 gi|288868593|gb|EFD00892.1| transcription-repair coupling factor [Clostridium hathewayi DSM
           13479]
          Length = 1178

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 91/511 (17%), Positives = 201/511 (39%), Gaps = 42/511 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
                L + ++ ++   L+ G   S K   M +  + +    +V+  +   A ++Y +F+
Sbjct: 13  KEFEDLDRDLNRKKGPVLISGCMDSQKVHLMYEAAKEVPWK-LVVTYDDTRAREIYEDFR 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           NF P                 +  P  D            + + R +  R L+E    +V
Sbjct: 72  NFEPG---------------VSLYPARDLLFFNADIHGNLLTKQRMAVFRRLMEEKSGVV 116

Query: 275 VSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V++   +   +  +    + I++++ G +++  E    LV+  Y+R       G F + G
Sbjct: 117 VTTFDGLMDHLLPLSFLQKQILEVESGQTLDIAEWKEKLVELGYERVAQVDGMGQFSIRG 176

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I++FP   E++  R+ ++ ++++ I  F   + + I  +E + +Y  +  V  +  + 
Sbjct: 177 GIIDVFPL-TEELPVRIELWDDEVDSIRTFDIESQRSIEELERVLVYPATEMVLTKQQIT 235

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
              + I++E K    EL  + +  EA R+   ++  L+ L        ++ Y  Y    +
Sbjct: 236 DGREAIEKEAKKYEKELRNQLKTEEAARIHSIVSELLDGLREGWKQHGLDGYIHYFCRDS 295

Query: 454 PGEPPPTLFEYIPED-SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                 +  +Y PED +++++DE      + + +         +  E+G+ LP       
Sbjct: 296 -----VSFLDYFPEDNTVIYLDEPERLKEKGATVEEEFRESMISRLEHGYLLPGQT---G 347

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           L +     L       +A     E +     + E   R +  V     + S +   E + 
Sbjct: 348 LLYPAKEMLAKAQRDRTAYLTGLEQKLSGFTVKE---RYSLSVKN---VNSYQNGFELLI 401

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            ++    ++G R++L   ++  +  L   L E ++R            R E+  +++ G+
Sbjct: 402 KDLTRWKREGYRVILLSASRTRSSRLASDLREYSLRAW-----CPDESREEV--EVKPGE 454

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEG 663
             +LV    L  G + P    + I + D  G
Sbjct: 455 --ILVTYGNLHRGFEYPMIKFIVITEGDMFG 483



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 18/192 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +  +    L +PPV+    +T V     E V + IN   
Sbjct: 781 VLTLTATPIPRTLHMSLVGIRDMSV----LEEPPVDRMPIQTYVMEYNDEMVREAINREL 836

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++          +++  ++        V + H ++   E   I+ D   G+ DVLV
Sbjct: 837 SRGGQVYYVYNRVSNIDEVAGHIASLVPEATVTFAHGQMHEHELERIMFDFVNGEIDVLV 896

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DAD+ G  +    L Q  GR  R+  +          K +
Sbjct: 897 CTTIIETGLDIPNANTMIIQDADRMGLSQ----LYQLRGRVGRSSRTSYAFLMYKRDKML 952

Query: 698 QLAIDETTRRRE 709
           +   +E  +R +
Sbjct: 953 R---EEAEKRLQ 961


>gi|311070702|ref|YP_003975625.1| transcription-repair coupling factor [Bacillus atrophaeus 1942]
 gi|310871219|gb|ADP34694.1| transcription-repair coupling factor [Bacillus atrophaeus 1942]
          Length = 1177

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 96/523 (18%), Positives = 191/523 (36%), Gaps = 52/523 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              ++ G+H   + QLL G++GS ++   + + E + +P  ++  N   A ++  +    
Sbjct: 14  FKSIVTGLHEGLREQLLAGLSGSARSVFTSALSEKINQPIFLITHNLYQAQKVTEDLTAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
               +V  +             P  +    + +  + ++   R      L      IVV+
Sbjct: 74  LEDQSVLLY-------------PVNELISSEIAVASPELRAQRLDVINRLTAGETPIVVA 120

Query: 277 SVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +      +    + +  G+ +E  +L S LV+  Y+R D+    G F + G  
Sbjct: 121 PVAAVRRMLPPVDVWKNSQMTITTGEDIEPDQLSSRLVEVGYERSDMVSAPGEFSIRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E    R+ +F  +++ I  F     + I  + ++ I      +        A
Sbjct: 181 IDIYPLTAE-HPVRIELFDTEVDSIRTFNSDDQRSIETLTSVSIGPAKELIIRAEEKARA 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ I + L   L +++ + +    + L   I++D E L    + Q +  Y  Y       
Sbjct: 240 IEKIDKGLAASLKKVKADKQ---KEILHMNISHDKERLSEGQTDQELVKYLSYFY----- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E P +L +Y P D+LL +DE          + + +      L E G  L     +  L F
Sbjct: 292 EKPASLLDYTPPDTLLLLDEVSRIHEMEEQLQKEEAEFVTNLLEEGKIL----HDISLSF 347

Query: 516 EEWNCLRPT---TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
              N +       +  S       L   Q    + I+  +        ++S   Q+  + 
Sbjct: 348 SFQNLVSKQQRPILYYS-----LFLRHVQHTSPQNIVNVSSRQ-----MQSFHGQMNVLA 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            E+    +    ++     K   E L+  L +  I              I+  + L  G+
Sbjct: 398 SEMERFKKSNFTVIFLGANKERTERLSSVLADYEIEAA----------MIDNKKALAQGQ 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             V V    L+ G ++P   L  I + +       K    Q I
Sbjct: 448 --VYVMEGELQSGFELPLMKLAVITEEELFKNRMKKKPRKQKI 488



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +     + +V Y H ++   E   ++ +   G+ DVLV   +
Sbjct: 834 QVYFLYNRVDDIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + D DK G  +    L Q  GR  R+       +     K +    
Sbjct: 894 IETGVDIPNVNTLIVFDGDKMGLSQ----LYQLRGRVGRSNRVAYAYFTYRRDKVLTEVA 949

Query: 702 D 702
           +
Sbjct: 950 E 950


>gi|167039252|ref|YP_001662237.1| transcription-repair coupling factor [Thermoanaerobacter sp. X514]
 gi|300913892|ref|ZP_07131209.1| transcription-repair coupling factor [Thermoanaerobacter sp. X561]
 gi|307725423|ref|YP_003905174.1| transcription-repair coupling factor [Thermoanaerobacter sp. X513]
 gi|166853492|gb|ABY91901.1| transcription-repair coupling factor [Thermoanaerobacter sp. X514]
 gi|300890577|gb|EFK85722.1| transcription-repair coupling factor [Thermoanaerobacter sp. X561]
 gi|307582484|gb|ADN55883.1| transcription-repair coupling factor [Thermoanaerobacter sp. X513]
          Length = 1165

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 93/521 (17%), Positives = 213/521 (40%), Gaps = 42/521 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
             I  + + +  R+   L  G+T S K      ++    +  +V+AP+++ A ++Y +  
Sbjct: 10  KEIKTIEEFLQQRKGPVLAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEARKIYEDLY 69

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +F   NA              +  P+ +    K  + ++++   R    + L E +   V
Sbjct: 70  SFNFGNA--------------SLFPKREALFYKIDAASQEVVSQRLQVIKKLSEESPHAV 115

Query: 275 VSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S+    G +  ++ + +     K+GD+V  +E++ SLV   Y+R  I   +G F V G
Sbjct: 116 VTSIDAAVGKLIPMDLFKKYQFVFKLGDTVNLEEVIKSLVTMGYERVQIVEGKGQFSVRG 175

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I++F S  E+  +R+ +F ++I+ I  F  +T + + N++ I I+  + ++     + 
Sbjct: 176 GIIDVF-SPTEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEAEHIK 234

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             +  +   L   L +++K    +  ++L+Q+    +E +  +   ++I     Y     
Sbjct: 235 KGISAVSNYLNSYLSKIKKPKSGIA-EKLQQKFEEIMEEITESKRVENIYELIDYFY--- 290

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             +   ++ +Y+ ED+++ +DES     +++ +          L E G  LP        
Sbjct: 291 --DDVYSIVDYMGEDAVIILDESSRIKQRVNNLQMEFNENFKALLEKGEVLPEQSKLFFD 348

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
             E    ++   +++  T      E     IV  + R          +      ++ + D
Sbjct: 349 YEEILKRVKNNFLLIMNTLAKPGNELQPQTIVNFVSRS---------MHHFHGNMDILVD 399

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++      G ++LL    +  A  L + L   NI    +          +   D++ G+ 
Sbjct: 400 DLKYYKNAGYKVLLLSGNQERARILKDTLDSFNIDTVVI---------KDSEYDIQKGQ- 449

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
            V++    + +G +  +     I D +  G  + +   ++ 
Sbjct: 450 -VVIYAASVSKGFEYVDAKFAVISDGEIFGQTKRRKRTVKI 489



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 95/250 (38%), Gaps = 15/250 (6%)

Query: 525  TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             + +SATP    L      I +  ++        PVE        E + D I     +G 
Sbjct: 775  VLTLSATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILREIARGG 834

Query: 584  RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
            ++          E +  ++ +     RV   H +++  +  +++ D   G++DVLV   +
Sbjct: 835  QVYFVYNRVNGIEKMASFVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTI 894

Query: 642  LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            +  GLDIP    + + DADK G  +    L Q  GR  R+       +     K     +
Sbjct: 895  IETGLDIPNVNTIIVYDADKLGLSQ----LYQLRGRVGRSNRLAYAYFTYRKDK----VL 946

Query: 702  DETTRRREKQLEHNKKHNINPQSVKEKIMEV-IDPILLEDAATTNISIDAQQLSLSKKKG 760
             E   +R + ++   +        K  + ++ I        A  +  IDA    L  K  
Sbjct: 947  SEVAEKRLEAIKEFTEFG---SGFKIAMRDLEIRGAGNLLGAEQHGHIDAIGYDLYLKLL 1003

Query: 761  KAHLKSLRKQ 770
            +  +++L+ +
Sbjct: 1004 EEAIRNLKGE 1013


>gi|291482427|dbj|BAI83502.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           natto BEST195]
          Length = 1177

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 93/503 (18%), Positives = 187/503 (37%), Gaps = 46/503 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              ++ G+H   K QLL G++GS ++   + +     +P  ++  N   A ++  +  + 
Sbjct: 14  FKSIINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNLYQAQKVTDDLTSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
               +V  +             P  +    + +  + ++   R      L      IVV+
Sbjct: 74  LEDRSVLLY-------------PVNELISSEIAVASPELRAQRLDVINRLTNGEAPIVVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ I  +    E +    + +++G  +E  +L S LV+  Y+R D+    G F + G  
Sbjct: 121 PVAAIRRMLPPVEVWKSSQMLIQVGHDIEPDQLASRLVEVGYERSDMVSAPGEFSIRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ I  F     + I  + +I I      +        A
Sbjct: 181 IDIYPLTSEN-PVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPEEKARA 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           M+ I   L   L +L+ + +    + L   I++D E L    + Q +  Y  Y       
Sbjct: 240 MEKIDSGLAASLKKLKADKQ---KEILHANISHDKERLSEGQTDQELVKYLSYFY----- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E P +L +Y P+++LL +DE          + + +      L E G  L     +   + 
Sbjct: 292 EKPASLLDYTPDNTLLILDEVSRIHEMEEQLQKEEAEFITNLLEEGKILHDIRLSFSFQK 351

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                 RP             L        + I+  +G       ++S   Q+  +  E+
Sbjct: 352 IVAEQKRPLLYYSLF------LRHVHHTSPQNIVNVSGRQ-----MQSFHGQMNVLAGEM 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    ++     K   + L+  L + +I      S+          + L  G+  V
Sbjct: 401 ERFKKSNFTVVFLGANKERTQKLSSVLADYDIEAAVTDSK----------KALVQGQ--V 448

Query: 636 LVGINLLREGLDIPECGLVAILD 658
            +    L+ G ++P   L  I +
Sbjct: 449 YIMEGELQSGFELPLMKLAVITE 471



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +     + +V Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DADK G  +    L Q  GR  R+       +     K +    
Sbjct: 894 IETGVDIPNVNTLIVFDADKMGLSQ----LYQLRGRVGRSNRVAYAYFTYRRDKVLTEVA 949

Query: 702 D 702
           +
Sbjct: 950 E 950


>gi|167036600|ref|YP_001664178.1| transcription-repair coupling factor [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115027|ref|YP_004185186.1| transcription-repair coupling factor [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855434|gb|ABY93842.1| transcription-repair coupling factor [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928118|gb|ADV78803.1| transcription-repair coupling factor [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 1165

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 93/521 (17%), Positives = 213/521 (40%), Gaps = 42/521 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
             I  + + +  R+   L  G+T S K      ++    +  +V+AP+++ A ++Y +  
Sbjct: 10  KEIKTIEEFLQQRKGPVLAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEARKIYEDLY 69

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +F   NA              +  P+ +    K  + ++++   R    + L E +   V
Sbjct: 70  SFNFGNA--------------SLFPKREALFYKIDAASQEVVSQRLQVIKKLSEESPHAV 115

Query: 275 VSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S+    G +  ++ + +     K+GD+V  +E++ SLV   Y+R  I   +G F V G
Sbjct: 116 VTSIDAAVGKLIPMDLFKKYQFVFKLGDTVNLEEVIKSLVTMGYERVQIVEGKGQFSVRG 175

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I++F S  E+  +R+ +F ++I+ I  F  +T + + N++ I I+  + ++     + 
Sbjct: 176 GIIDVF-SPTEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEAEHIK 234

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             +  +   L   L +++K    +  ++L+Q+    +E +  +   ++I     Y     
Sbjct: 235 KGISAVSNYLNSYLSKIKKPKSGIA-EKLQQKFEEIMEEITESKRVENIYELIDYFY--- 290

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             +   ++ +Y+ ED+++ +DES     +++ +          L E G  LP        
Sbjct: 291 --DDVYSIVDYMGEDAVIILDESSRIKQRVNNLQMEFNENFKALLEKGEVLPEQSKLFFD 348

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
             E    ++   +++  T      E     IV  + R          +      ++ + D
Sbjct: 349 YEEILKRVKNNFLLIMNTLAKPGNELQPQTIVNFVSRS---------MHHFHGNMDILVD 399

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++      G ++LL    +  A  L + L   NI    +          +   D++ G+ 
Sbjct: 400 DLKYYKNAGYKVLLLSGNQERARILKDTLDSFNIDTVVI---------KDSEYDIQKGQ- 449

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
            V++    + +G +  +     I D +  G  + +   ++ 
Sbjct: 450 -VVIYAASVSKGFEYVDAKFAVISDGEIFGQTKRRKRTVKI 489



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 95/250 (38%), Gaps = 15/250 (6%)

Query: 525  TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             + +SATP    L      I +  ++        PVE        E + D I     +G 
Sbjct: 775  VLTLSATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILREIARGG 834

Query: 584  RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
            ++          E +  ++ +     RV   H +++  +  +++ D   G++DVLV   +
Sbjct: 835  QVYFVYNRVNGIEKMASFVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTI 894

Query: 642  LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            +  GLDIP    + + DADK G  +    L Q  GR  R+       +     K     +
Sbjct: 895  IETGLDIPNVNTIIVYDADKLGLSQ----LYQLRGRVGRSNRLAYAYFTYRKDK----VL 946

Query: 702  DETTRRREKQLEHNKKHNINPQSVKEKIMEV-IDPILLEDAATTNISIDAQQLSLSKKKG 760
             E   +R + ++   +        K  + ++ I        A  +  IDA    L  K  
Sbjct: 947  SEVAEKRLEAIKEFTEFG---SGFKIAMRDLEIRGAGNLLGAEQHGHIDAIGYDLYLKLL 1003

Query: 761  KAHLKSLRKQ 770
            +  +++L+ +
Sbjct: 1004 EEAIRNLKGE 1013


>gi|142781|gb|AAA22360.1| putative cytoplasmic protein; putative [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 186

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 109/182 (59%), Positives = 143/182 (78%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + Y P GDQP AI +L+KGI   +K Q LLG TG+GKTFT++ +I+ + +P +V+A
Sbjct: 5   FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LA QLYSEFK FFP+NAVEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RH
Sbjct: 65  HNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SAT +L ER D I+++SVSCIYG+GS E Y +M+V L+    +E+ ELL  LV  QY R 
Sbjct: 125 SATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLVAIQYARN 184

Query: 321 DI 322
           DI
Sbjct: 185 DI 186


>gi|256751659|ref|ZP_05492534.1| transcription factor CarD [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749468|gb|EEU62497.1| transcription factor CarD [Thermoanaerobacter ethanolicus CCSD1]
          Length = 765

 Score =  253 bits (646), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 91/521 (17%), Positives = 212/521 (40%), Gaps = 42/521 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
             I  + + +  R+   L  G+T S K      ++    +  +V+AP+++ A ++Y +  
Sbjct: 10  KEIKTIEEFLKQRKGPILAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEARKIYEDLY 69

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +F   NA              +  P+ +    K  + ++++   R    + L E +   V
Sbjct: 70  SFNFGNA--------------SLFPKREALFYKIDAASQEVVSQRLQVIKKLSEESPHAV 115

Query: 275 VSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S+    G +  ++ + +     K+G +V  +E++ SLV   Y+R  +   +G F V G
Sbjct: 116 VTSIDAAVGKLIPMDLFKKYQFVFKLGVTVNLEEVIKSLVTMGYERVQMVEGKGQFSVRG 175

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I++F S  E+  +R+ +F ++I+ I  F  +T + + N++ I I+  + ++     + 
Sbjct: 176 GIIDVF-SPTEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAGAEHIK 234

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             +  +   L   L +++K    +  ++L+Q+    +E +  +   ++I     Y     
Sbjct: 235 KGISAVSNYLNSYLSKIKKSKSGIA-EKLQQKFEEIMEEITESKRVENIYELIDYFY--- 290

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             +   ++ +Y+ ED+++ +DES     +++ +          L E G  LP        
Sbjct: 291 --DDVYSIVDYMGEDAVIILDESSRIKQRVNNLQMEFNENFKALLEKGEVLPEQSKLFFD 348

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
             E    ++   +++  T      E     IV  + R          +      ++ + D
Sbjct: 349 YEEILKRVKNNFLLIMNTLAKPGNELQPQTIVNFVSRS---------MHHFHGNMDILVD 399

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++      G ++LL    +  A  L + L   NI    +          +   D++ G+ 
Sbjct: 400 DLKYYKNAGYKVLLLSGNQERARILKDTLDSFNIDTVVI---------KDSEYDIQKGQ- 449

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
            V++    + +G +  +     I D +  G  + +   ++ 
Sbjct: 450 -VVIYPASVSKGFEYVDAKFAVISDGEIFGQTKRRKRTVKI 489


>gi|16077123|ref|NP_387936.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221307865|ref|ZP_03589712.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312187|ref|ZP_03593992.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317120|ref|ZP_03598414.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321383|ref|ZP_03602677.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|585481|sp|P37474|MFD_BACSU RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|467444|dbj|BAA05290.1| transcription-repair coupling factor [Bacillus subtilis]
 gi|2632322|emb|CAB11831.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 1177

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 93/503 (18%), Positives = 187/503 (37%), Gaps = 46/503 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              ++ G+H   K QLL G++GS ++   + +     +P  ++  N   A ++  +  + 
Sbjct: 14  FKSIINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNLYQAQKVTDDLTSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
               +V  +             P  +    + +  + ++   R      L      IVV+
Sbjct: 74  LEDRSVLLY-------------PVNELISSEIAVASPELRAQRLDVINRLTNGEAPIVVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ I  +    E +    + +++G  +E  +L S LV+  Y+R D+    G F + G  
Sbjct: 121 PVAAIRRMLPPVEVWKSSQMLIQVGHDIEPDQLASRLVEVGYERSDMVSAPGEFSIRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ I  F     + I  + +I I      +        A
Sbjct: 181 IDIYPLTSEN-PVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPEEKARA 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           M+ I   L   L +L+ + +    + L   I++D E L    + Q +  Y  Y       
Sbjct: 240 MEKIDSGLAASLKKLKADKQ---KEILHANISHDKERLSEGQTDQELVKYLSYFY----- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E P +L +Y P+++LL +DE          + + +      L E G  L     +   + 
Sbjct: 292 EKPASLLDYTPDNTLLILDEVSRIHEMEEQLQKEEAEFITNLLEEGKILHDIRLSFSFQK 351

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                 RP             L        + I+  +G       ++S   Q+  +  E+
Sbjct: 352 IVAEQKRPLLYYSLF------LRHVHHTSPQNIVNVSGRQ-----MQSFHGQMNVLAGEM 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    ++     K   + L+  L + +I      S+          + L  G+  V
Sbjct: 401 ERFKKSNFTVVFLGANKERTQKLSSVLADYDIEAAMTDSK----------KALVQGQ--V 448

Query: 636 LVGINLLREGLDIPECGLVAILD 658
            +    L+ G ++P   L  I +
Sbjct: 449 YIMEGELQSGFELPLMKLAVITE 471



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +     + +V Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DADK G  +    L Q  GR  R+       +     K +    
Sbjct: 894 IETGVDIPNVNTLIVFDADKMGLSQ----LYQLRGRVGRSNRVAYAYFTYRRDKVLTEVA 949

Query: 702 D 702
           +
Sbjct: 950 E 950


>gi|167463169|ref|ZP_02328258.1| transcription-repair coupling factor [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 1150

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 98/551 (17%), Positives = 202/551 (36%), Gaps = 69/551 (12%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              ++ GI S  K QL+ G+TGS +   +A +++ +QRP +V+  N   A ++  +    
Sbjct: 14  FQSIVSGIRSDMKEQLVAGLTGSSRQVMIASLMQELQRPLLVITHNMFSAQKITEDLVEC 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P N V  +             P  +    + +  + +    R      L      ++V+
Sbjct: 74  LPENQVLLY-------------PAQELLAAEVAVASPETLAQRIDVLTRLAAGFRGVLVT 120

Query: 277 SVSCIYGIGSVESYSQMI-VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
             + +  +   +       +++K+GD ++    L+ L +  Y+R D    +G   V G  
Sbjct: 121 PYAGLRRLLPPKEMFAAAAMEVKLGDVLDINAFLTRLTELGYERVDRVESKGEISVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+++P   E  A R+ +F ++++ I  F   + + I     I I      V         
Sbjct: 181 IDVYPLTAE-AALRIELFDDEVDSIRTFDVESQRSIDKQSAIMIPPCREIVADSKRFQRV 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
            +   E L+ +L ++          +L + I Y++E L    +   +  Y       +  
Sbjct: 240 SQQAYELLQAQLEKMSDR---TAKDKLLENIGYEIEQLREEQTFNGMFKYISLFYPES-- 294

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
               TLF+Y+P+D +L +DE    I     + R +        + G  LP    ++    
Sbjct: 295 ---HTLFDYMPQDGILLLDEPARLIETAKQLEREEADWFTHSLQEGRALPDLSLSKT--- 348

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI--IRPTGLVDPPVEI-RSARTQVEDVY 572
             +  L          P  +       + + Q+   +P  +V+    + ++   Q+  + 
Sbjct: 349 --YESLLHRPAF----PVLY-----LSLFLRQVPQTQPQNIVNFMCRVMQNFHGQMNVLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            E+    + G R++L    +   E +   L + +I                        +
Sbjct: 398 SEMERWKKTGARVVLLANGEERMERVRHVLEDYHIP-----------------------E 434

Query: 633 FDVLVGINLLREGLDIPECGLVAILDAD----KEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            ++L     L+ G ++P   LV I + +    K+  +R     I+   R       KV  
Sbjct: 435 PEIL--NGNLQTGFEMPSIRLVVITEGEMFTQKQRKVRKADKKIENAERIKSYQELKVGD 492

Query: 689 YADTITKSIQL 699
           Y   +   I  
Sbjct: 493 YVVHVNHGIGK 503



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 26/165 (15%)

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           + LE    ++ E I R                QV  +++ +    Q   +I + V   R 
Sbjct: 800 YVLEHTPTLVREAIERELAR----------EGQVYYLFNRVQGITQIADQISMLVPDAR- 848

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
                         V   H ++   E  + I D   G++DVLV  +++  G+DIP    +
Sbjct: 849 --------------VSVAHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTL 894

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            + DADK G L     L   +GR+ R   +      D +   +  
Sbjct: 895 IVHDADKMG-LSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAE 938


>gi|321313725|ref|YP_004206012.1| transcription-repair coupling factor [Bacillus subtilis BSn5]
 gi|320019999|gb|ADV94985.1| transcription-repair coupling factor [Bacillus subtilis BSn5]
          Length = 1177

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 92/503 (18%), Positives = 187/503 (37%), Gaps = 46/503 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              ++ G+H   K QLL G++GS ++   + +     +P  ++  N   A ++  +  + 
Sbjct: 14  FKSIINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNLYQAQKVTDDLTSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
               +V  +             P  +    + +  + ++   R      L      IVV+
Sbjct: 74  LEDRSVLLY-------------PVNELISSEIAVASPELRAQRLDVINRLTNGEAPIVVA 120

Query: 277 SVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ I  +    E +    + +++G  +E  +L S L++  Y+R D+    G F + G  
Sbjct: 121 PVAAIRRMLPPVEVWKSSQMLIQVGHDIEPDQLASRLIEVGYERSDMVSAPGEFSIRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ I  F     + I  + +I I      +        A
Sbjct: 181 IDIYPLTSEN-PVRIELFDTEVDSIRNFNSDDQRSIETLTSINIGPAKELIIRPEEKARA 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           M+ I   L   L +L+ + +    + L   I++D E L    + Q +  Y  Y       
Sbjct: 240 MEKIDSGLAASLKKLKADKQ---KEILHANISHDKERLSEGQTDQELVKYLSYFY----- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E P +L +Y P+++LL +DE          + + +      L E G  L     +   + 
Sbjct: 292 EKPASLLDYTPDNTLLILDEVSRIHEMEEQLQKEEAEFITNLLEEGKILHDIRLSFSFQK 351

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                 RP             L        + I+  +G       ++S   Q+  +  E+
Sbjct: 352 IVAEQKRPLLYYSLF------LRHVHHTSPQNIVNVSGRQ-----MQSFHGQMNVLAGEM 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    ++     K   + L+  L + +I      S+          + L  G+  V
Sbjct: 401 ERFKKSNFTVVFLGANKERTQKLSSVLADYDIEAAVTDSK----------KALVQGQ--V 448

Query: 636 LVGINLLREGLDIPECGLVAILD 658
            +    L+ G ++P   L  I +
Sbjct: 449 YIMEGELQSGFELPLMKLAVITE 471



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +     + +V Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DADK G  +    L Q  GR  R+       +     K +    
Sbjct: 894 IETGVDIPNVNTLIVFDADKMGLSQ----LYQLRGRVGRSNRVAYAYFTYRRDKVLTEVA 949

Query: 702 D 702
           +
Sbjct: 950 E 950


>gi|322381190|ref|ZP_08055193.1| transcription-repair coupling factor-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154766|gb|EFX47037.1| transcription-repair coupling factor-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 1173

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 98/551 (17%), Positives = 202/551 (36%), Gaps = 69/551 (12%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              ++ GI S  K QL+ G+TGS +   +A +++ +QRP +V+  N   A ++  +    
Sbjct: 14  FQSIVSGIRSDMKEQLVAGLTGSSRQVMIASLMQELQRPLLVITHNMFSAQKITEDLVEC 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P N V  +             P  +    + +  + +    R      L      ++V+
Sbjct: 74  LPENQVLLY-------------PAQELLAAEVAVASPETLAQRIDVLTRLAAGFRGVLVT 120

Query: 277 SVSCIYGIGSVESYSQMI-VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
             + +  +   +       +++K+GD ++    L+ L +  Y+R D    +G   V G  
Sbjct: 121 PYAGLRRLLPPKEMFAAAAMEVKLGDVLDINAFLTRLTELGYERVDRVESKGEISVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+++P   E  A R+ +F ++++ I  F   + + I     I I      V         
Sbjct: 181 IDVYPLTAE-AALRIELFDDEVDSIRTFDVESQRSIDKQSAIMIPPCREIVADSKRFQRV 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
            +   E L+ +L ++          +L + I Y++E L    +   +  Y       +  
Sbjct: 240 SQQAYELLQAQLEKMSDR---TAKDKLLENIGYEIEQLREEQTFNGMFKYISLFYPES-- 294

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
               TLF+Y+P+D +L +DE    I     + R +        + G  LP    ++    
Sbjct: 295 ---HTLFDYMPQDGILLLDEPARLIETAKQLEREEADWFTHSLQEGRALPDLSLSKT--- 348

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI--IRPTGLVDPPVEI-RSARTQVEDVY 572
             +  L          P  +       + + Q+   +P  +V+    + ++   Q+  + 
Sbjct: 349 --YESLLHRPAF----PVLY-----LSLFLRQVPQTQPQNIVNFMCRVMQNFHGQMNVLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            E+    + G R++L    +   E +   L + +I                        +
Sbjct: 398 SEMERWKKTGARVVLLANGEERMERVRHVLEDYHIP-----------------------E 434

Query: 633 FDVLVGINLLREGLDIPECGLVAILDAD----KEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            ++L     L+ G ++P   LV I + +    K+  +R     I+   R       KV  
Sbjct: 435 PEIL--NGNLQTGFEMPSIRLVVITEGEMFTQKQRKVRKADKKIENAERIKSYQELKVGD 492

Query: 689 YADTITKSIQL 699
           Y   +   I  
Sbjct: 493 YVVHVNHGIGK 503



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 26/165 (15%)

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           + LE    ++ E I R                QV  +++ +    Q   +I + V   R 
Sbjct: 800 YVLEHTPTLVREAIERELAR----------EGQVYYLFNRVQGITQIADQISMLVPDAR- 848

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
                         V   H ++   E  + I D   G++DVLV  +++  G+DIP    +
Sbjct: 849 --------------VSVAHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTL 894

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            + DADK G L     L   +GR+ R   +      D +   +  
Sbjct: 895 IVHDADKMG-LSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAE 938


>gi|296329557|ref|ZP_06872043.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305672754|ref|YP_003864425.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296153300|gb|EFG94163.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305410997|gb|ADM36115.1| transcription-repair coupling factor [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 1177

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 93/503 (18%), Positives = 186/503 (36%), Gaps = 46/503 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              ++ G+H   K QLL G++GS ++   + +     +P  ++  N   A ++  +  + 
Sbjct: 14  FKSIINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNLYQAQKVTDDLTSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
               +V  +             P  +    + +  + ++   R      L      IVV+
Sbjct: 74  LEDRSVLLY-------------PVNELISSEIAVASPELRAQRLDVINRLTNGEAPIVVA 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +  VE +    + +++G  +E  +L S LV+  Y+R D+    G F + G  
Sbjct: 121 PVAALRRMLPPVEVWKNSQMLIQVGHDIEPDQLASRLVEVGYERSDMVSAPGEFSIRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E    R+ +F  +++ I  F     + I  + +I I      +        A
Sbjct: 181 VDIYPLTSE-HPVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPEEKVRA 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           M+ I + L   L +L+ + +    + L   I+YD E L    + Q +  Y  Y       
Sbjct: 240 MEKIDKGLAASLKKLKVDKQ---KEILHANISYDKERLSEGQTDQELVKYLSYFY----- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E P +L +Y PE++LL +DE          + + +      L E G  L     +   + 
Sbjct: 292 EKPASLLDYTPENTLLILDEVSRIHEMEEQLQKEEAEFITNLLEEGKILHDISLSFSFQK 351

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                 RP             L        + I+  +        ++S   Q+  +  E+
Sbjct: 352 IVAEQKRPLLYYSLF------LRHVHHTSPQNIVNVSSRQ-----MQSFHGQMNVLAGEM 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    ++     K   + L+  L +  I      S+          + L  G+  V
Sbjct: 401 ERFKKSNFTVVFLGTNKERTQRLSSVLADYEIEAAMTDSK----------KALVQGQ--V 448

Query: 636 LVGINLLREGLDIPECGLVAILD 658
            +    L+ G ++P   L  I +
Sbjct: 449 YIMEGELQSGFELPLMKLAVITE 471



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +     + +V Y H ++   E   ++ +   G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDAKVAYAHGKMTENELETVMLNFLEGESDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DADK G  +    L Q  GR  R+       +     K +    
Sbjct: 894 IETGVDIPNVNTLIVFDADKMGLSQ----LYQLRGRVGRSNRVAYAYFTYRRDKVLTEVA 949

Query: 702 D 702
           +
Sbjct: 950 E 950


>gi|212637897|ref|YP_002314417.1| transcription-repair coupling factor (helicase, mfd) [Anoxybacillus
           flavithermus WK1]
 gi|212559377|gb|ACJ32432.1| Transcription-repair coupling factor (helicase, mfd) [Anoxybacillus
           flavithermus WK1]
          Length = 1189

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 93/547 (17%), Positives = 204/547 (37%), Gaps = 51/547 (9%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             + +G+ +  K QL+ G++GS ++  ++ + E  +RP  ++  N   A ++Y +     
Sbjct: 34  QSVAEGVRNGLKEQLVTGLSGSARSVFISSLYEDTERPLCIVTHNLFQAQKIYDDLIQLI 93

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
               V  +             P  +    + +  + ++   R        ER   IV++ 
Sbjct: 94  DEEEVFLY-------------PVNELIAAELAVASPELRAQRLEVLNYWCERKKGIVIAP 140

Query: 278 VSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           ++ +  +   +  + +  +  ++G+ ++ +  L   V   Y+R  +    G F V G  I
Sbjct: 141 IAALRRLLPPKDVWQRYQLHFRVGEQMDVEHCLKQFVAMGYERVSVVSTPGEFSVRGGII 200

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +I+P   E + +R+ +F  +IE I  F     + +  ++ + I   +  +  +  +N A+
Sbjct: 201 DIYPLTAE-LPYRIELFDVEIESIRTFSVDDQRSVAEIDEVLIGPATELIVEQQHINEAI 259

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           + ++ +L   L  +  E       RL + ++++LE L+   S + +  Y           
Sbjct: 260 QRLEAQLHDTLQHIHDEK---TKNRLYEHVSFELEQLKNGKSIEEMYKYFSLFYPSA--- 313

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF- 515
              +L +YIPE  ++ +DE          + + +      L E G  + S   +    F 
Sbjct: 314 --ASLLDYIPEHGVVIIDEMSRIQEVAEKLEQEEAEWYTNLLEEGKIVQSV--SISHSFP 369

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           E       +TI +S       L        + I+  +             +Q++ +  E+
Sbjct: 370 EVLQKRMRSTIYLS-----LFLRHIPYTHPQNIVNVSCKQMQV-----FYSQMQLLKGEV 419

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    ++L    +  A+ L + L +  I             +I     L  GK  +
Sbjct: 420 ERWQKGNYAVVLLAGNEERAKKLKQTLEDYEIDA----------IQIGKDDALLHGKCQI 469

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILYADT 692
            V   L+  G ++P   L  I + +       +    Q +    R     + KV  Y   
Sbjct: 470 -VPSGLVA-GFELPMQKLAVITEEELFKKRMKRPVRRQKLSNAERIKSYTDLKVGDYVVH 527

Query: 693 ITKSIQL 699
           +   I  
Sbjct: 528 VNHGIGK 534



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 793 VLTLTATPIPRTLHMSLIGVRDLSVIETPPENRFPVQTYVMEYSPIIVREAIEREMARGG 852

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +   E +       R  Y H  +   E   ++     G++DVLV   +
Sbjct: 853 QVFFLYNRVEDIDRKAEEISALVPDARVTYAHGRMSEHELEAVMLAFLEGQYDVLVSTTI 912

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-- 699
           +  G+DIP    + + DADK G L     L   +GR+ R   +      D +   I    
Sbjct: 913 IETGVDIPNVNTLIVYDADKMG-LSQLYQLRGRVGRSNRIAYAYFTYRKDKVLNEIAEKR 971

Query: 700 --AIDE 703
             AI E
Sbjct: 972 LQAIKE 977


>gi|326202452|ref|ZP_08192321.1| transcription-repair coupling factor [Clostridium papyrosolvens DSM
           2782]
 gi|325987570|gb|EGD48397.1| transcription-repair coupling factor [Clostridium papyrosolvens DSM
           2782]
          Length = 1174

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 101/506 (19%), Positives = 195/506 (38%), Gaps = 43/506 (8%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           LL  +   +    ++G + S K   +  +   +QR  + +  N++ A + Y +F  F   
Sbjct: 17  LLTNVREGKGPVSVIGPSDSQKVHMIYSLCTHLQRRGLYVTYNEMQARRAYEDFSFFLGD 76

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DCIVVSSV 278
           + + Y              P  +T +    + +  I   R       LE N   IV+S+ 
Sbjct: 77  DVLYY--------------PPKETMLYNIEARSNDIIYQRTRTLLRCLEGNYKLIVMSAE 122

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           + I  I  VE +   +V   +G  ++  EL+S LV   Y+R +    +  F V G  I+I
Sbjct: 123 ALIQMISPVELFRGGVVDFSVGLQIDLDELVSKLVLYGYERVEAVEGKAQFAVRGGIIDI 182

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           F +   +   R+ +F  +++ I  F   T +   ++E  +I      V    +    +  
Sbjct: 183 F-AVNSEHPVRIELFDTEVDSIRYFDETTQRSTNSIEECRIAPARDVVYKDISKEAIVSK 241

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           IK++L   + +L+++      + + +R+  D++ L        I+ Y  Y+      E P
Sbjct: 242 IKKDLADYVKKLKQKDNSEGVKNISKRVEEDIDNLVEHHYFPGIDRYLPYIL-----ETP 296

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP-SCMDNRPLRFEE 517
            ++ +YI  +S++ +DE+     +I  +         +L E G  LP          F  
Sbjct: 297 ASVIDYIERESIVVLDETLRITQRIENVQLEHEELAKSLLEKGGILPKGAEWAFSADFIV 356

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
              L   T+ +SA                QI  P    +      S ++ ++ + D+I  
Sbjct: 357 DRILNLRTVTLSAISS----NNSLIRPYNQISIPCKSGN------SYQSHIDLLVDDIEQ 406

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             ++  +I++          L E L    I   Y         +      L+ G+  V+V
Sbjct: 407 LRKKEYKIIVLSGPSGRGHRLVETLATNEISSSY---------KDNTEYKLQNGE--VVV 455

Query: 638 GINLLREGLDIPECGLVAILDADKEG 663
               L++G + P    V I D +  G
Sbjct: 456 THGSLQKGFEYPTAAFVVISDIEVFG 481



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 78/205 (38%), Gaps = 17/205 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVY 572
           E+   L+P    + ++ATP    L      I +  ++        PV+       +E + 
Sbjct: 767 EKLKTLKPNVDVLTLTATPIPRTLHMSLVGIRDISVLEDPPEERYPVQTYVMEYNMELIR 826

Query: 573 DEINLAAQQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           D I     +  ++       R  +    ++   + E  + V   H ++   E  +++   
Sbjct: 827 DGIIREMARNGQVFYMYNRVRGIDLKAQEIRTMIPEARVAVA--HGQMNEKELEDVMYGF 884

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G++DVLV   ++  GLD+P    + + DAD+ G  +    L Q  GR  R+       
Sbjct: 885 INGEYDVLVCTTIIESGLDMPNVNTIVVEDADRMGLSQ----LYQIRGRVGRSNRLAYAY 940

Query: 689 YADTITKSIQLAIDETTRRREKQLE 713
                 K     + E   +R + ++
Sbjct: 941 ITYKKDK----VLSEVAEKRLQAIK 961



 Score = 40.8 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ   I ++ K +   R   +LL G  G GKT   +  V +++   +  
Sbjct: 620 FEELFPYQETDDQLKCIDEIKKDMESERLMDRLLCGDVGYGKTEVAIRAVFKSVMDGKQV 679

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
             +AP  ILA QLY  FK       V   V        E
Sbjct: 680 AYLAPTTILAQQLYENFKKRMSDFPVTVDVMSRFRTPAE 718


>gi|255281409|ref|ZP_05345964.1| transcription-repair coupling factor [Bryantella formatexigens DSM
           14469]
 gi|255267897|gb|EET61102.1| transcription-repair coupling factor [Bryantella formatexigens DSM
           14469]
          Length = 1179

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 94/511 (18%), Positives = 194/511 (37%), Gaps = 45/511 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
               QL  G+     +  + G   + K+  M  V E  ++  +++  +++ A ++Y  ++
Sbjct: 12  EEFEQLCSGLKKNRGILQVSGCIEAQKSHLMYSVGEPYKKK-LIITYSELRAKEIYENYR 70

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
             F  + V  +             P  D         + QI + R +  ++LLE     V
Sbjct: 71  --FFDSKVLLY-------------PARDLMFYSADIRSHQIGQQRMAVLQALLEEEQVTV 115

Query: 275 VSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           ++++  C+  +  +      +++      +  ++L   L++  Y++       G F V G
Sbjct: 116 ITTLPGCMEHVLPLSCIRDHVLEFAQDSELNPEKLSGQLIEMGYEKTVQVDAPGQFAVRG 175

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++IFP   E+   R+ ++G++I+ I  F   + + I N+ET++IY     V       
Sbjct: 176 GIVDIFPL-TEENPVRIELWGDEIDSIRSFDAESQRSIENLETVRIYPAGEAVISDVQAA 234

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A + IK+E K +        +  EA R+ +      E L        +E ++ YL    
Sbjct: 235 KAAERIKKESKKQEKIFRDAMKTEEAHRVRETAQEVCERLLELKERTGLEAFTPYLY--- 291

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             E   +  +Y   D+L+ +DE +    +   +         +  E G+ LP        
Sbjct: 292 --EETVSFLDYFGTDALIMLDEPNRIAEEGRAVQEEFSENMKSRLEKGYILPGQT----- 344

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDVY 572
                  L     ++        L  C   +       TG     V  I S  +  E + 
Sbjct: 345 -----GILYGQQQIIGELNRRNCLALCIMDLPRDEWNVTGRYSMTVRSISSYNSSFEQLV 399

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            ++    ++G R+ L   ++  A  L E L E          E+ +    ++ R+++ G+
Sbjct: 400 KDLKRWKKEGYRVALLCASRTRAMRLAEDLREH---------ELNSFFTEDMDREIQPGE 450

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEG 663
             +L+      +G + P      I ++D  G
Sbjct: 451 --ILLARGNTHKGYEYPLIRFAVITESDIFG 479



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 68/183 (37%), Gaps = 11/183 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      I +  ++    +    ++        E V + I+    +G 
Sbjct: 776 VLTLTATPIPRTLHMSLIGIRDMSVLEEPPMERTAIQTYVMEYNEEMVREAISRELARGG 835

Query: 584 RILLTVLTKR----MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++            M   + + L E N  V + H ++K  E   I+ D   G  DVLV  
Sbjct: 836 QVYYVYNRVNTIVEMTNKIAKLLPEAN--VAFAHGQMKERELERIMYDFINGDIDVLVST 893

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDI     + I DAD  G  +    L Q  GR  R+  +          K ++ 
Sbjct: 894 TIIETGLDISNVNTMIIHDADTMGLSQ----LYQLRGRVGRSNRTAYAFLMYRRNKMLKE 949

Query: 700 AID 702
             +
Sbjct: 950 VAE 952



 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 88/231 (38%), Gaps = 29/231 (12%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A Q+G +++  V T    ++      + + +  +RV  +       E+
Sbjct: 658 GKTEIAIRAAFKAVQEGKQVVYLVPTTILAQQHYNTFVQRMKDFPVRVDLLCRFRTPAEQ 717

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            + + DL+ G  D+L+G + +L + ++  + GL+ I +  + G    +      I +   
Sbjct: 718 KKTLVDLKKGLVDILIGTHRVLSKDVEYKDLGLLVIDEEQRFGVTHKE-----KIKQLKT 772

Query: 681 NVN---------SKVILYADTITKSIQLAIDETTRRREKQ---LEHNKKHNINPQSVKEK 728
           NV+          + +  +    + + +  +    R   Q   +E+N++  +  +++  +
Sbjct: 773 NVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPMERTAIQTYVMEYNEE--MVREAISRE 830

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
           +        + +   T + +  +   L     +A++     QM      L 
Sbjct: 831 LARGGQVYYVYNRVNTIVEMTNKIAKLLP---EANVAFAHGQMKE--RELE 876


>gi|51894370|ref|YP_077061.1| transcription-repair coupling factor [Symbiobacterium thermophilum
           IAM 14863]
 gi|51858059|dbj|BAD42217.1| transcription-repair coupling factor [Symbiobacterium thermophilum
           IAM 14863]
          Length = 1243

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 121/602 (20%), Positives = 216/602 (35%), Gaps = 92/602 (15%)

Query: 153 QPAA-IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           Q +A  + L  G+      Q++ GV GS K+  +A + E   RPA+V+      A Q   
Sbjct: 11  QASAEFSSLYDGMRRGFAEQMVYGVAGSLKSAFLAALRERTGRPALVITATIQQAEQFRE 70

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           + + + P   V  F        P  Y+P       +  + + ++   R S    L     
Sbjct: 71  DLETWLPGQDVALFP-------PMEYLP------FEVMAHSPEVIGQRLSVLERLARGES 117

Query: 272 CIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            IVV+  + +Y G+     + + ++ L+ G ++ + EL++ LV+Q Y+R D+   +G   
Sbjct: 118 LIVVAPAAALYRGLTPSAVFRRSLLTLRPGQAIGRDELVARLVRQGYERVDMVESKGHVA 177

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V G+ +++FP   E    RV+ +G++IEEI  F P T + +  V+ + +     ++ P  
Sbjct: 178 VRGEIVDLFPLAAE-YPLRVAFWGDEIEEIRRFDPATQRTVEQVDALSVGPAREFILPED 236

Query: 391 TLNTAMKYIKEELKMRLIELEKE------------------------------------- 413
            L  A+  I+ +L   +  L +                                      
Sbjct: 237 GLEPAIARIRRDLAETVARLRRIQVREAAARAGEARVEAAGAEAGGAADGEVGKGRAGRG 296

Query: 414 ------------GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
                         +  AQ+LE+R+   L  L+       +E Y+ +       +   TL
Sbjct: 297 RRRRKDVPSLPLDAVDAAQKLEERVEGHLARLQEQIYFPGLEQYATFFY-----DQLETL 351

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN-C 520
            +Y PE  L+ VDE              +  R+A + E G  LP  +       E +  C
Sbjct: 352 IDYFPERPLILVDEPARIRDASVEAEGREADRQAAMMERGHLLPGQLGLYIGYQELFQRC 411

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            + + I  SA           G  +  I     +      ++    Q     +E+    +
Sbjct: 412 RQGSAIYFSAL----------GRGIPGIRPANEVGLSATTVQEFHGQWPLFAEELRRWKK 461

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           QG RI++ V T+     + E L E  +      +                    V VG+ 
Sbjct: 462 QGFRIVILVGTEDRQRRIRELLQEAEMESGAGAAGSPVAV---------PPPGGVWVGLG 512

Query: 641 LLREGLDIPECGLVAILDADK--EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            L  G   P   LV + D +       R +  +  T G   R            +   + 
Sbjct: 513 SLEGGFQWPGQRLVVVTDREIQGRQRRRRRGGVHGTAGATGRQGARIASYQDLQVGDYVV 572

Query: 699 LA 700
            A
Sbjct: 573 HA 574



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 9/190 (4%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDVYDEINLAAQQGL 583
             + +SATP    L      + +  I  T   D  PVE   A      V D I     +G 
Sbjct: 839  VLTLSATPIPRTLHMAMVGLRDMSIITTPPEDRYPVETFVAEYDDALVQDAIGRELSRGG 898

Query: 584  RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
            ++       +  +D+   L+      R    H ++      +I+ D   G++DVLV   +
Sbjct: 899  QVFYVHNRIQTLDDVAARLHRLVPEARIAVAHGQMSEDRLEKIVLDFMDGEYDVLVATTI 958

Query: 642  LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            +  G+D+P+   + + DAD  G  +    L Q  GR  R+       +     K +  A 
Sbjct: 959  IENGIDMPQVNTIIVEDADHLGLSQ----LYQLRGRVGRSNRLAYAYFLYRRDKVLTEAS 1014

Query: 702  DETTRRREKQ 711
            +   R R  +
Sbjct: 1015 E--KRLRAIK 1022



 Score = 41.6 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT---MAKVIEAMQRPA 196
           F+    Y  + DQ  AIA++   +   R   +LLLG  G GKT      A       +  
Sbjct: 681 FEDAFPYEETPDQLTAIAEIKADMEKARPMDRLLLGDVGYGKTEVALRAAFKAATAGKQV 740

Query: 197 IVMAPNKILAAQLYSEFKN 215
            ++ P  ILA Q Y+  K+
Sbjct: 741 AILVPTTILAQQHYATCKS 759


>gi|89100521|ref|ZP_01173382.1| transcription-repair coupling factor [Bacillus sp. NRRL B-14911]
 gi|89084787|gb|EAR63927.1| transcription-repair coupling factor [Bacillus sp. NRRL B-14911]
          Length = 1179

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 100/515 (19%), Positives = 197/515 (38%), Gaps = 46/515 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G++   K QL+ G+TGS +T  +A + E  ++P +V+  N + A +LY +  N 
Sbjct: 14  IKTVITGVNGGLKEQLVAGLTGSARTLFLASIYEQTKKPMLVVTHNLLQAQKLYDDIVNL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + V  +             P  +    + S  + ++   R  A      +   IV+ 
Sbjct: 74  IGEDDVYLY-------------PANELIASELSIASPELRAQRIDALNHWSGKGTGIVII 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            ++ +   +     + +  + LK+GD +E +E L   VK  Y R D+    G F V G  
Sbjct: 121 PMAGMRKVLPPPSLWKKRQLILKLGDDIEIEEQLLEFVKMGYSRTDMVSSPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P   E    R+ +F  +I+ I  F     +    ++ + I   +         +  
Sbjct: 181 MDIYP-LTEADPIRIELFDTEIDSIRSFSLEDQRSKEKLKQVHIGPATENPFEDEHYDRV 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
            + +++ L   L +L+ E      + L Q I Y+LE L      + +  Y  Y       
Sbjct: 240 YEKLEKGLSASLKKLKDEK---AKELLAQNIGYELEQLRNRQRPEQMFKYLSYAY----- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E   +L +Y+P+D L+F+DE          + + +     +L   G  +     +  L+ 
Sbjct: 292 ESNNSLLDYLPQDGLIFIDEISRVQEMNESLEKEEAEWYTSLLGEGKIVHDVKISHSLK- 350

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            E+       IV      S  L        + II  +        +++   Q+  +  E+
Sbjct: 351 -EFIARSYQPIVY----MSLFLRHVPNTNPQNIINVSCRQ-----MQNFHGQLNVLKSEL 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               + G  +L         + L   L +  I    +          E  +++  GKF  
Sbjct: 401 ERWRKSGFSVLFLGPDMARVKKLQSVLADYEIEAAVI----------EPDKEVLKGKFQ- 449

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +    L+ G ++P   +  I + +      +K S
Sbjct: 450 -ITEGSLQTGFELPIQKIAVITEEELFNKKTAKRS 483



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 775 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGGLVREAIEREMARGG 834

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   E +       + +  H ++   E   ++     G+ DVLV   +
Sbjct: 835 QVYFLYNRVEDIERKAEEISMLVPDAKVVAAHGQMTENELESVMLSFLGGEADVLVSTTI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +     K +    
Sbjct: 895 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFTYRKDKVLTEVA 950

Query: 702 D 702
           +
Sbjct: 951 E 951



 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQL-LKGIHSREKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F++   Y  + DQ  +I ++ L     R   +LL G  G GKT   +    +A+   +  
Sbjct: 617 FELSFPYQETEDQLRSIHEIKLDMEKERPMDRLLCGDVGYGKTEVAIRAAFKAIADGKQV 676

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVE 223
            ++ P  ILA Q Y   +  F    VE
Sbjct: 677 AILVPTTILAQQHYQTMRERFQEYPVE 703


>gi|289579379|ref|YP_003478006.1| transcription-repair coupling factor [Thermoanaerobacter italicus
           Ab9]
 gi|289529092|gb|ADD03444.1| transcription-repair coupling factor [Thermoanaerobacter italicus
           Ab9]
          Length = 1163

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 90/510 (17%), Positives = 209/510 (40%), Gaps = 42/510 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
             I  + + +   +   L  G+T S K      ++    +  +V+AP+ I A ++Y +  
Sbjct: 10  KEIKTIEEFLKQGKGPLLAYGLTDSQKAHVAHYIMSKFNKKVLVIAPDDIEARKIYEDLY 69

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +F   NA              +  P+ +    K  + ++++   R    + L       V
Sbjct: 70  SFSFGNA--------------SLFPKREALFYKIDAASQEMVSQRLRVIKKLTRETPHAV 115

Query: 275 VSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S+ + I  +  +  + +  +  KIGD V  +E++ + V   Y+R  I   +G F V G
Sbjct: 116 VTSIDAAIGKLIPMNLFEKYQMFFKIGDIVNLQEVIKNFVAMGYERVQIVEGKGQFSVRG 175

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I++F S +E+  +R+ +F ++I+ I  F  +T + + N++ I I+  + ++     + 
Sbjct: 176 GIIDVF-SPIEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEEKHIK 234

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             +  + + L   L++++K    +  ++L+Q+    +E +      ++I     Y     
Sbjct: 235 KGISAVSKSLNSYLLKIKKSKSGIA-EKLQQKFEEIMEEITEAKRVENIHELIDYFY--- 290

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             +   ++ +Y+ E++++ +DES     +++ +          L E G  LP        
Sbjct: 291 --DEVYSIVDYVGEEAVIILDESSRIKQRVNNLQMEFNENFKALLEKGEVLPEQSRLFFD 348

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
             E     + + +++  T    + E     IV  I R          +     +++ + D
Sbjct: 349 YEEILKKAKNSFLLIVNTLAKPDNELQPRKIVNFISRS---------MHPFHGKMDILID 399

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++      G ++LL    +  A+ L + L   NI    +          +   D++ G+ 
Sbjct: 400 DLKYYKNAGYKVLLLSGNQERAKILKDTLESFNIDAAVI---------EDSEYDIQKGQ- 449

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEG 663
            V++    + +G +  +     I + +  G
Sbjct: 450 -VVIYPASVSKGFEYVDAKFAVITEGEIFG 478



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      I +  ++        PVE        E + D I     +G 
Sbjct: 775 VLTLSATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILREIGRGG 834

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E +   + +     RV   H +++  +  +++ D   G++DVLV   +
Sbjct: 835 QVYFVYNRVNGIEKMASLVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + + DADK G  +    L Q  GR  R+       +     K +    
Sbjct: 895 IETGLDIPNVNTIIVYDADKLGLSQ----LYQLRGRVGRSNRLAYAYFTYRKDKVLSEVA 950

Query: 702 D 702
           +
Sbjct: 951 E 951


>gi|297545520|ref|YP_003677822.1| transcription-repair coupling factor [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296843295|gb|ADH61811.1| transcription-repair coupling factor [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 1163

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 88/522 (16%), Positives = 213/522 (40%), Gaps = 44/522 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
             I  + + +   +   L  G+T S K      ++    +  +V+AP+ I A ++Y +  
Sbjct: 10  KEIKTIEEFLKQGKGPLLAYGLTDSQKAHVAHYIMSKFNKKVLVIAPDDIEARKIYEDLY 69

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +F   NA              +  P+ +    K  + ++++   R    + L       V
Sbjct: 70  SFSFGNA--------------SLFPKREALFYKIDAASQEMVSQRLRVIKKLTRETPHAV 115

Query: 275 VSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S+ + I  +  +  + +  +  KIGD V  +E++ + V   Y+R  I   +G F V G
Sbjct: 116 VTSIDAAIGKLIPMNLFEKYQMFFKIGDIVNLQEVIKNFVAMGYERVQIVEGKGQFSVRG 175

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I++F S +E+  +R+ +F ++I+ I  F  +T + + N++ I I+  + ++     + 
Sbjct: 176 GIIDVF-SPIEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEEKHIK 234

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             +  + + L   L++++K    +  ++L+Q+    +E +      ++I     Y     
Sbjct: 235 KGISAVSKSLNSYLLKIKKSKSGIA-EKLQQKFEEIMEEITEAKRVENIHELIDYFY--- 290

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             +   ++ +Y+ E++++ +DES     +++ +          L E G  LP        
Sbjct: 291 --DEVYSIVDYVGEEAVIILDESSRIKQRVNNLQMEFNENFKALLEKGEVLPEQSRLFFD 348

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDVY 572
             E     + + +++  T              +  ++P  +V+     +     +++ + 
Sbjct: 349 YEEILKKAKNSFLLIVNTLAK----------PDNDLQPRKIVNFISRSMHPFHGKIDILI 398

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D++      G ++LL    +  A+ L + L   NI    +          +   D++ G+
Sbjct: 399 DDLKYYKNAGYKVLLLSGNQERAKILKDTLESFNIDAAVI---------EDSEYDIQKGQ 449

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
             V++    + +G +  +     I + +  G  R     ++ 
Sbjct: 450 --VVIYPASVSKGFEYVDAKFAVITEGEIFGQTRKSKKTVKI 489



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      I +  ++        PVE        E + D I     +G 
Sbjct: 775 VLTLSATPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILREIGRGG 834

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E +   + +     RV   H +++  +  +++ D   G++DVLV   +
Sbjct: 835 QVYFVYNRVNGIEKMASLVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + + DADK G  +    L Q  GR  R+       +     K +    
Sbjct: 895 IETGLDIPNVNTIIVYDADKLGLSQ----LYQLRGRVGRSNRLAYAYFTYRKDKVLSEVA 950

Query: 702 D 702
           +
Sbjct: 951 E 951


>gi|322807864|emb|CBZ05439.1| transcription-repair coupling factor [Clostridium botulinum H04402
           065]
          Length = 1168

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 90/524 (17%), Positives = 200/524 (38%), Gaps = 51/524 (9%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           + +    S D       LL  I+  +      G++ SGK + ++ +   +    ++   +
Sbjct: 6   LVSPLSLSED----FKSLLNNINLNKFPIGAYGLSDSGKNYFISNIFANVDESLVIFTHS 61

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
            + A ++Y +   +                    Y+P  +       +I+  +   R   
Sbjct: 62  DVEARKIYEDLSLYTTE---------------VYYLPTKEVVFYNIYAISGDLRWERLKV 106

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
              +L     I+V+ +  +      +    +   +L +GD +E K L   L+K  Y+R D
Sbjct: 107 INEILSPKKKIIVTCIESLESAYIPKELYTKYTFKLSVGDIIEIKLLEEKLIKSGYERVD 166

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           I   +G F V G  I+I+P    +  +R+  F ++I+ I  F   + + I  V  I I+ 
Sbjct: 167 IVENKGEFSVRGGIIDIYPPISSE-PYRLEFFDDEIDSIRNFNVNSQRSIEKVNNINIFP 225

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
               +     ++  +K IK +L   +++L    +  + ++++  I  +LE L  + S ++
Sbjct: 226 AKEIILEEENISLGLKNIKTDLDKLVLKL---NKKEDKEKIQSIINSNLEQLNESWSFEN 282

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           I+ +  Y   +       +L +YI E SL+ +D+    + ++   Y           E G
Sbjct: 283 IDTFLPYFYNKT-----NSLLDYI-EGSLIIIDDVKRCLGKLDSTYLEFNEDYDKFLEKG 336

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
             LP   +       +   +               +++    +  +    + L      +
Sbjct: 337 CILPKQAEIV----HDKERIIEQLEF-KKIINIENIKKTIDRLKPK----SALTFNQTTL 387

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           +    ++E + ++I    ++  +IL+   T+   E L  +L +  +   Y          
Sbjct: 388 QGYNGKIEFLIEDIKEKKKEKYKILILSGTRSRGERLVNHLRDMGVESSY---------- 437

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +I+R+++ G+  V++       G    +  L  I D D  G  
Sbjct: 438 KDIVREIKPGE--VVITFGNQGNGFQYYDIKLSVISDKDIFGQF 479



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +I        PV+        + + D I     +G 
Sbjct: 775 VLTLSATPIPRTLHMSLVGVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGG 834

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I           ++  Y+ +     R    H ++K  E   ++ D    KFD+L+   +
Sbjct: 835 QIYFVYNRVESIHEMASYISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I DADK G L     L   +GR  R     +    D I       +
Sbjct: 895 IETGMDIKNVNTMIIYDADKMG-LSQLYQLRGRVGRTNRMAYCYLTYKRDKI-------L 946

Query: 702 DETTRRREKQLE 713
            E   +R K ++
Sbjct: 947 TEVAEKRLKAIK 958



 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+ +  Y  + DQ  AI  + K + S +   +LL G  G GKT   +    +A+   +  
Sbjct: 617 FEEEFPYEETPDQLLAIEDIKKDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQV 676

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
             + P  ILA Q Y+ FK  F  
Sbjct: 677 AFLVPTTILAQQHYNNFKQRFSD 699


>gi|254226405|ref|ZP_04919993.1| UvrABC system protein B [Vibrio cholerae V51]
 gi|125621094|gb|EAZ49440.1| UvrABC system protein B [Vibrio cholerae V51]
          Length = 218

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 115/215 (53%), Positives = 149/215 (69%), Gaps = 10/215 (4%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAEDLTEYL+E  ++VRY+HS++ T+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  L
Sbjct: 1   MAEDLTEYLHEHGVKVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVAL 60

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           VAILDADKEGFLRS+ SLIQT+GRAARNVN K ILYAD+ITKS++ AIDET RRREKQL 
Sbjct: 61  VAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITKSMRKAIDETERRREKQLA 120

Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTN----------ISIDAQQLSLSKKKGKAH 763
           +N++  I PQ +K  + ++++   +  +                  A    L+ ++ +  
Sbjct: 121 YNEQRGITPQPLKRSVKDIMELGDIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKE 180

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           +  L   M+  A NL FE AA+ RDEI +L+    
Sbjct: 181 ISKLEAAMYQHAQNLEFELAAQKRDEIHQLRQQFI 215


>gi|323691738|ref|ZP_08105998.1| transcription-repair coupling factor [Clostridium symbiosum
           WAL-14673]
 gi|323504216|gb|EGB20018.1| transcription-repair coupling factor [Clostridium symbiosum
           WAL-14673]
          Length = 1179

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/509 (17%), Positives = 193/509 (37%), Gaps = 46/509 (9%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +   +   L+ G   S K   ++++ + +    +++  +   A +LY +++ F P   V 
Sbjct: 22  LERGQGPLLVSGCMDSQKAHLISELTKEIPWK-LIVTYDDQRARELYEDYRCFSPD--VY 78

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY- 282
            +             P  D            + R R    + L E +   V+++V  +  
Sbjct: 79  LY-------------PARDLLFYSSDIHGNLLTRQRMQVMKHLAEESGGAVITTVDGLMD 125

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +  +E+  +  +++  G++++  +L  SL    Y+R       G F V G  I+I+P  
Sbjct: 126 HLLPLENLKRQCLRVGSGEALDVDKLKVSLTGMGYERVAQVDGMGQFSVRGGIIDIYPL- 184

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            ED+ +R+ ++G++++ I  F P + + +  ++   IY  +  V  R      ++ I++E
Sbjct: 185 TEDLPFRIELWGDEVDSIRTFDPESQRSVEQLDEALIYPATELVLTREEAAAGIQKIEKE 244

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
               +  L ++ +  EA R+E  I+   E L+       + ++ RY           +  
Sbjct: 245 KNKYVKSLREQMKTEEAHRIESVISELTEGLKEGWRVHGLGSFIRYFCP-----ETVSFL 299

Query: 463 EYIPED-SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            Y PE    +F+DE      +   +            E G+ LP   D           +
Sbjct: 300 RYFPEGRLTVFMDEPLRLREKAEVVEEEFRESMVHRLENGYLLPGQAD----------FM 349

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEINLAAQ 580
            P   V++   G   L           I         V+ + S +   E +  ++    +
Sbjct: 350 FPAKAVMAMAAGDRTLMMLGLEQKLPGISVKKKFGLTVKSVNSYQNGFELLIKDLTRWKK 409

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +  R++L   ++  A  L   L E ++R      +   ++ +           +++V   
Sbjct: 410 EKYRVVLLSGSRTRASRLAGDLREYDLRAFC--PDEGQIQVL---------PGEIMVTYG 458

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKT 669
            L  G + P    V I + D  G +R K 
Sbjct: 459 NLHRGFEYPLIKFVVITEGDMFGGVRQKK 487



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 18/192 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +  +    L +PPV+    +T V     E V + I+   
Sbjct: 779 VLTLTATPIPRTLHMSLIGIRDMSV----LEEPPVDRLPIQTYVMEYNDEMVREAIHREL 834

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++          +++T ++        V + H ++   E   I+ D   G  DVLV
Sbjct: 835 ARGGQVYYVYNRVNNIDEITNHVAALVPEANVTFAHGQMHEHELERIMLDFVNGDIDVLV 894

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DAD+ G  +    L Q  GR  R+  +          K +
Sbjct: 895 STTIIETGLDIPNANTIIIHDADRLGLSQ----LYQIRGRVGRSNRTSYAFLMYRRDKLL 950

Query: 698 QLAIDETTRRRE 709
           +   +E  +R +
Sbjct: 951 R---EEAEKRLQ 959



 Score = 38.2 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 91/238 (38%), Gaps = 36/238 (15%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A Q+G +++  V T    ++      + + +  +RV  M       E+
Sbjct: 661 GKTEIALRAAFKAIQEGKQVVYLVPTTILAQQHYNTFVQRMKDFPVRVDMMSRFRTATEQ 720

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              + DL+ G  DVL+G + +L + +     GL+ I +  + G    +      I +   
Sbjct: 721 KRTLEDLKKGFVDVLIGTHRVLSKDVVFKNLGLLIIDEEQRFGVAHKE-----KIKQLKE 775

Query: 681 NVN---------SKVILYADTITKSIQLAIDETTRRREKQ---LEHNKKHNINPQSVKEK 728
           NV+          + +  +    + + +  +    R   Q   +E+N +  +  +++  +
Sbjct: 776 NVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPVDRLPIQTYVMEYNDE--MVREAIHRE 833

Query: 729 IME------VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
           +        V + +   D  T +++    + +++   G+ H   L + M      L+F
Sbjct: 834 LARGGQVYYVYNRVNNIDEITNHVAALVPEANVTFAHGQMHEHELERIM------LDF 885


>gi|308445934|ref|XP_003087055.1| hypothetical protein CRE_21113 [Caenorhabditis remanei]
 gi|308264371|gb|EFP08324.1| hypothetical protein CRE_21113 [Caenorhabditis remanei]
          Length = 214

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 110/199 (55%), Positives = 143/199 (71%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + ++Y P+GDQP AIA+L+ GI +    Q L G+TGSGKTFTMA VI  ++RP I++A
Sbjct: 6   FILHSNYIPAGDQPEAIARLISGIDNGATHQTLKGITGSGKTFTMANVIHRLKRPTIILA 65

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           PNK L AQLY E K FFP NAVEYFVSYYDY+QPE Y+P +D +I+K+S+IN+ ++R+R 
Sbjct: 66  PNKTLTAQLYDEMKRFFPENAVEYFVSYYDYFQPEVYIPGSDRFIQKDSAINDHLERLRL 125

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           S T+SL+ER D IVV+SVS IYG+G   SY  + + L  G   EQKEL+  L   QY+R 
Sbjct: 126 STTKSLIERRDVIVVASVSSIYGLGDPSSYKALQIPLAPGAQFEQKELIHRLALLQYERS 185

Query: 321 DIGIIRGTFRVCGDSIEIF 339
           +  I R  FRV GD I+IF
Sbjct: 186 EKTIKRAMFRVRGDIIDIF 204


>gi|163815685|ref|ZP_02207057.1| hypothetical protein COPEUT_01865 [Coprococcus eutactus ATCC 27759]
 gi|158448990|gb|EDP25985.1| hypothetical protein COPEUT_01865 [Coprococcus eutactus ATCC 27759]
          Length = 1186

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 97/525 (18%), Positives = 192/525 (36%), Gaps = 45/525 (8%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVT--GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLY 210
           Q     Q+   + + +    ++G +  G+ + F M  V +      +V+  +   A QLY
Sbjct: 10  QLNIYRQIKDWLAAGDGFVDVIGSSMEGTDRVFLMNAVSDESSVK-LVLTYSDKRAEQLY 68

Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270
           S+ +  F    V  +             P  D            I R R    R L+   
Sbjct: 69  SDLR--FYSRDVYMY-------------PAKDILFFSADVHGNAITRKRMDVLRRLVSGE 113

Query: 271 DCIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
            C +V++V  ++  I ++   ++ I+ +     ++  +L   L    Y + D     G F
Sbjct: 114 PCTIVATVDALFDKIPALSYMNKYIINICTAQRLDVDDLRQKLSALGYDKVDNVEEPGQF 173

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
            V G  I+I+P   E+  +R+ M+ ++++ I  F   + + I  V++I IY     V  +
Sbjct: 174 AVRGGIIDIYPL-TEECPYRIDMWDDEVDTIKTFDAESQRSIETVDSIVIYPAGEIVLSQ 232

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
             +N  ++ I+ ELK    +L++        R+++ +    E L    +   +++Y  Y 
Sbjct: 233 DRINRGIRKIEAELKPYAQKLKESFHTEAYARIKREVAELKEQLTEFSAVYGVDSYVDYF 292

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
                     +L + +P+DS + +DE+     + +    G         E G+ LP  M 
Sbjct: 293 Y-----SDTVSLIDCLPDDSYVLIDETRKVSDRAATDETGFRSSMVHRLEGGYVLPGQM- 346

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           N    +++         VV                 ++I           E+ S R   +
Sbjct: 347 NVMYSYDDVIDKAKKYNVVGFD--------AFDGRDDRISYAHKTEIECHEVHSYRNSFD 398

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +  +I    +    +L    +   A+ + + L + +I   Y+ S+   +     I  + 
Sbjct: 399 TLVADIRSWKKNKNSVLFVSPSSVGAKRMVDNLMDADIICHYL-SDADKVLTPREIAAM- 456

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
                       LR G  IP   LV + + D      S     Q 
Sbjct: 457 ---------AGRLRSGFMIPAMHLVVVSEGDVFSSRSSSGKRTQK 492



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +     + L + PV+ R  +T V     E   + I    
Sbjct: 781 VLTLTATPIPRTLHMSLVGIRDM----SLLEEAPVDRRPIQTYVMEYDKELAREAIAREL 836

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E  T  + +   N  V + H ++      +I+      + DVLV
Sbjct: 837 ARQGQVYYVYNRVNDIEQFTAEVQKLVPNANVEFAHGQMDGRTLEDIMYRFNKKEIDVLV 896

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA+  G  +    L Q  GR  R+  S             
Sbjct: 897 CTTIIETGLDIPNANTIIIHDANNFGLAQ----LYQLRGRVGRSDRSAFAFMFYR----R 948

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              I E   +R + ++      
Sbjct: 949 NKVISEVAEKRLRAIKEYTDLG 970



 Score = 37.4 bits (85), Expect = 9.3,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 25/178 (14%)

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           G     V IR+A   V D      L          T+L ++  E  TE + +  + +R +
Sbjct: 661 GFGKTEVAIRAAFKAVGDSRQVAYLVP-------TTILAEQHYETFTERMKDYPVVIRLL 713

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSL 671
                  E    +R+L+ GK D+++G + LL + ++    GL+ I +  + G    +   
Sbjct: 714 CRFCTQKEIKNTLRELKEGKVDIVIGTHRLLSKDVEFKNLGLLIIDEEQRFGVNHKE--- 770

Query: 672 IQTIGRAARNVN---------SKVILYADTITKSIQLAIDETTRRREKQ---LEHNKK 717
              I     NV+          + +  +    + + L  +    RR  Q   +E++K+
Sbjct: 771 --KIKEMKTNVDVLTLTATPIPRTLHMSLVGIRDMSLLEEAPVDRRPIQTYVMEYDKE 826


>gi|167957456|ref|ZP_02544530.1| excinuclease ABC subunit B [candidate division TM7 single-cell
           isolate TM7c]
          Length = 215

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 113/217 (52%), Positives = 155/217 (71%), Gaps = 3/217 (1%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +  R+L+T LTKRMAEDL+ YL E  I+  Y+HSE+ TLER +I+RDLR G +DVLVGIN
Sbjct: 2   KNKRVLVTTLTKRMAEDLSTYLQELGIKTAYIHSEIDTLERGDILRDLRSGVYDVLVGIN 61

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           LLREGLD+PE  LVAI+DADKEGFLRS+++LIQTIGRAAR+V  KV++Y D IT+S++LA
Sbjct: 62  LLREGLDLPEVSLVAIMDADKEGFLRSESALIQTIGRAARHVEGKVLMYGDVITRSMRLA 121

Query: 701 IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG 760
           IDET  RR+ Q ++N ++NI P+ V + I E +  I+ +     N         + K++ 
Sbjct: 122 IDETNSRRKLQQQYNLENNITPRGVDKAIDEGLRAIIPQ---KDNEKPKIDLKKIPKEEY 178

Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            A +K L  QM+LA+ NL FE+AA +RD I  +++  
Sbjct: 179 GALVKDLTNQMNLASANLEFEKAAELRDLIAEIRNKQ 215


>gi|253576880|ref|ZP_04854205.1| transcription-repair coupling factor [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251843747|gb|EES71770.1| transcription-repair coupling factor [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 1177

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 92/523 (17%), Positives = 204/523 (39%), Gaps = 71/523 (13%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            A  + GI+S  K QL+ G++GS +   +A + +  +RP +V+  N   A ++Y + +  
Sbjct: 18  FASTVAGINSGMKEQLISGLSGSSRQVMLAALHQETKRPLLVVTHNMFSAQKMYEDLQEA 77

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + V  +             P  +    + +  + +    R             IVV 
Sbjct: 78  LSPDQVLMY-------------PANELVAAESAVSSPETLAQRIEVLLQCSRGFRGIVVV 124

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
             S I   I + E+ ++  + +++G ++E +  ++ +V+  Y+R +    RG   + G  
Sbjct: 125 PYSGIRRYIPTPEAMAEAGLTVRLGGTLELERFMAQMVELGYERVERVESRGEMSLRGGI 184

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+ +P     +A+RV +F ++++ I  F P   + +  ++ + I      +  +  +  A
Sbjct: 185 IDFYPLTAS-MAYRVELFDDEVDSIRTFDPADQRSVDQIKEVFIPPCKELIATKERMGQA 243

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
            + + E+L+++L ++          RL + +  ++EML        I  Y   +      
Sbjct: 244 AQALSEKLEIQLDKMTDR---QAKNRLREEMYKEIEMLREHVYFSEIYKYISLIYPER-- 298

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS---CMDNRP 512
               TL++Y+PED+LL +DE    +     + R +      L + G  LP     +D   
Sbjct: 299 ---KTLYDYMPEDTLLLLDEPSRLLETAKQLERDEAEWNLHLYQNGKSLPDLPLAVDVDH 355

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII--RPTGLVDPPVE-IRSARTQVE 569
           L +         T+ +S             + + Q+   +P  +V+     ++    Q+ 
Sbjct: 356 LIYH----RPFQTLFLS-------------LFLRQVPHSQPQNIVNFVTRAMQDFHGQMN 398

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +  E+    + G  +++   T+   + +   L +  I       +   L +        
Sbjct: 399 VLKAEMERWKKSGAHVIMLASTEERMDRMRRVLQDYGI-------DEPQLLQ-------- 443

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
                       L+ G ++P   LV I + +     + K   +
Sbjct: 444 ----------GNLQSGFELPSVHLVVITEGEMFSQKQRKARRV 476



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYSQSLVREAIEREMARGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I       +   ++   +       R +  H ++   E  + I D   G++DVLV  ++
Sbjct: 826 QIYYLYNRVQGIHEMAAQISMLVPEARVVVGHGQMSEQELEKTILDFLDGEYDVLVSTSI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DADK G  +    L Q  GR  R+       +     KS+    
Sbjct: 886 IETGVDIPNVNTLIVHDADKMGLSQ----LYQLRGRVGRSNRIAYAYFTYQKDKSLTEVA 941

Query: 702 D 702
           +
Sbjct: 942 E 942



 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 114 NPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQL 172
           + L+K          ++    + +   F+    Y  + DQ  AI ++ + +  SR   +L
Sbjct: 581 DDLIKLYAERQAAPGYAFEKDTPEQQEFEAMFPYEETPDQLRAIEEIKRDMEQSRPMDRL 640

Query: 173 LLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFF 217
           L G  G GKT   +    +A    +   V+ P  ILA Q Y  F+  F
Sbjct: 641 LCGDVGYGKTEVAIRAAFKAAIEGKQVAVLVPTTILAQQHYETFRERF 688


>gi|149182807|ref|ZP_01861269.1| transcription-repair coupling factor [Bacillus sp. SG-1]
 gi|148849474|gb|EDL63662.1| transcription-repair coupling factor [Bacillus sp. SG-1]
          Length = 1177

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 91/527 (17%), Positives = 192/527 (36%), Gaps = 52/527 (9%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +  L  G+      QL+ G++GS ++  +A +     + AIV+  N + A ++Y +
Sbjct: 10  QNEELQALASGVEEGLGEQLVAGLSGSSRSVFIASMFRKTGKSAIVLTHNLLQAQKIYED 69

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
              F     V  +             P  +    + S  + ++   R      L      
Sbjct: 70  LLQFLNDEEVYLY-------------PANELIAAELSVASPELKSQRIEVLNRLATDQKG 116

Query: 273 IVVSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           I V   + +  I   +S +  M +   +G+ V+   LL  L+   Y+R ++    G F +
Sbjct: 117 IFVVPAAGLRKILPPKSLWKSMQLSFTLGEDVDLDNLLEQLLVMGYQRNEMVGTPGEFSL 176

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++IFP H  +   R+ +F  +++ I  F     + I  ++ + I   S  +     
Sbjct: 177 RGGILDIFP-HTLETPVRIELFDTEVDSIRSFSLEDQRSIEKLKDVHIGPASETIMKGEH 235

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           L   +  ++  L   L +++ +      ++L Q I Y+LE L      Q +  Y  +   
Sbjct: 236 LANIIDRLEAGLAKSLKKIKSDSV---KEKLTQNIGYELEQLRNGQKSQQVYKYLSFAY- 291

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL---PSCM 508
               + P +L +Y+PED + F+DE          + + +     +L + G  +   P   
Sbjct: 292 ----DEPASLLDYLPEDGIFFLDELGRVQEMGESLDKEEAEWYTSLLQEGEIVHDAPVSH 347

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           +   L  +        ++ +   P           I     +P         ++S   Q+
Sbjct: 348 NLSKLLIQTSLPKVYFSLFLRHIP-----NTSPQNIFNLSSKP---------MQSFHGQM 393

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             +  E++   +    I+L    +   + L   L + +I V  +          +    L
Sbjct: 394 HVLKAELDRWKKGNFNIILLGPDEERIKKLQRVLKDYDIEVAVV----------QDNDKL 443

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             G+  ++     L  G ++P   +  + + +       K    Q +
Sbjct: 444 LTGQAQIM--SGHLTNGFELPMMKIAVLTEEELFNKKTRKAPRKQKL 488



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +  
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGVMMKEAIERELARDG 833

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   E +     + RV + H ++   E   +I     G+FDVLV   +
Sbjct: 834 QVYFLYNRVEDIERKAEEISMLVPDARVAFAHGKMNETELESVILSFLDGEFDVLVTTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +     K +    
Sbjct: 894 IETGVDIPNVNTLIVYDADRMGLSQ----LYQLRGRVGRSNRVAYSYFTYRKDKVLTEVA 949

Query: 702 D 702
           +
Sbjct: 950 E 950


>gi|229542275|ref|ZP_04431335.1| transcription-repair coupling factor [Bacillus coagulans 36D1]
 gi|229326695|gb|EEN92370.1| transcription-repair coupling factor [Bacillus coagulans 36D1]
          Length = 1179

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 108/552 (19%), Positives = 209/552 (37%), Gaps = 63/552 (11%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             ++ G  +  K QL+ G++GS ++  +A V +  ++PAIV+  N + A +LY +   F 
Sbjct: 15  ESVISGTTAGLKEQLVSGLSGSARSAFIASVYQKTEQPAIVLTYNLLQAQKLYDDLLQFV 74

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
             +A+  +             P  +    +    + ++   R     +LL   +C++V  
Sbjct: 75  DESALFLY-------------PANELIAAELGVASPELMAQRIEVLNALLSGKNCLIVVP 121

Query: 278 VSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           ++ +  I   ++ + +  + ++ G  +E   +L  LV+  Y R D+    G F V G  +
Sbjct: 122 MAGLRKILPPKTVWEKYQLHVETGKEIELDHVLEMLVEMGYTRSDMVDSPGDFSVRGGIL 181

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +I+P   E+   R+ +F  +++ I  F     +    +  + I   + Y   R +L  A 
Sbjct: 182 DIYPL-TEEDPVRIELFDTEVDSIRTFSADDQRSRDKLSAVSIGPATEYPADRLSLMKAA 240

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           + +KE L   L +++ +      Q L Q I++D+E L+       I  Y   L      +
Sbjct: 241 ETVKEGLSKTLAKIKDDQV---KQLLAQNISFDIEKLKNGEKPDQIFKYLSILY-----D 292

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG---FRLPSCMDNRPL 513
            P +L +Y+    +LF+DE          + + +      + E G   + L        L
Sbjct: 293 QPASLLDYVETAGILFLDEFGRIQEMQERLDKEEAEWYTAMVEEGKMIYDLAVSHALDTL 352

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVY 572
              +       ++          L   Q         P  +V+   + ++S   Q+  + 
Sbjct: 353 LSGKKWKKIYLSLF---------LRHIQN------TNPQNIVNIACKPMQSFHGQMHVLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI    +    ++     K  AE +   L +  I   Y+              DL  G 
Sbjct: 398 AEIERWKKGRFTVVFLGADKNRAEKIQSVLEDYEIEAAYV------------AEDLIPGH 445

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-------NVNSK 685
             V      L  G ++P C L  I + +       K +  Q +  A R       NV   
Sbjct: 446 IQV--AEGNLNTGFELPMCKLAVITEEELFNKKAKKKTRRQKLSNAERIKNYSELNVGDY 503

Query: 686 VILYADTITKSI 697
           V+     I K +
Sbjct: 504 VVHVNHGIGKYL 515



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 66/181 (36%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+        + V + I     +  
Sbjct: 772 VLTLTATPIPRTLHMSMVGVRDLSVIETPPENRFPVQTYVLEYNDQMVREAIERELARDG 831

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   E +     + RV Y H  +   +   +I     G++DVLV   +
Sbjct: 832 QVYFLYNRIEDIERKAEEIARLVPDARVAYAHGRMTESQLESVIFGFLEGEYDVLVTTTI 891

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +     K +  A 
Sbjct: 892 IETGVDIPNVNTLIVNDADRMGLSQ----LYQLRGRVGRSNRVAYAYFTYRKDKVLAEAS 947

Query: 702 D 702
           +
Sbjct: 948 E 948


>gi|308066876|ref|YP_003868481.1| transcription-repair coupling factor (TRCF) [Paenibacillus polymyxa
           E681]
 gi|305856155|gb|ADM67943.1| Transcription-repair coupling factor (TRCF) [Paenibacillus polymyxa
           E681]
          Length = 1175

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 94/532 (17%), Positives = 197/532 (37%), Gaps = 73/532 (13%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
           A +  GI S  K QL+ G++GS +   MA + E   RP +VM  N   A ++  + +   
Sbjct: 16  ASIAAGISSGMKEQLISGLSGSSRQVLMAALAEDTGRPLMVMTHNMFAAQKIADDLQEAL 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
             + V  +             P  +    + +  + +    R        +    IVV  
Sbjct: 76  SPDQVLLY-------------PANELVAAEAAISSPETLSQRIDVLIRCAQGFRGIVVVP 122

Query: 278 VSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
            S +  +    E++ +  ++LK G++++ +  L  +V+  Y+R +    RG   V G  I
Sbjct: 123 FSGVRRLLPIPETWREARIELKEGETIQLEAFLLHMVEMGYQRVERVESRGEMSVRGGII 182

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           + +P       +RV +F ++I+ I +F P   + +  V+ + +      +     ++ A 
Sbjct: 183 DFYPMTT-RWGYRVELFDDEIDSIRKFDPQDQRSVEKVQDVTVTPCKEVIANNQRMDQAA 241

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
                 L+ +L ++         Q L++ I  ++E+L        I  Y   L       
Sbjct: 242 DAAAILLEEQLGKMTDR---QAKQHLKEEIHREIELLREHVYFDEIYKYISLLYPER--- 295

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TL +Y+P D++L +DE    +     + R +      L + G  LP  ++       
Sbjct: 296 --KTLADYMPADTILIIDEPARMLETAKQLERDESEWNLHLLQNGKTLP-QLELSDDADN 352

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQI--IRPTGLVDPPVE-IRSARTQVEDVYD 573
                R  T+ +S             I + Q+   +P  +++     ++    Q+  +  
Sbjct: 353 LLYNRRFQTLFLS-------------IFLRQVPHTQPQNILNFICRGMQDFHGQMNVLKA 399

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E++   + G ++++        + +   L +  I       +  T+              
Sbjct: 400 EMDRWRKAGTQVMMLASGDERLDRMRRVLEDYGI-------DEPTM-------------- 438

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR-AARNVNS 684
                I  L+ G ++P   L  I + +            Q   R   R+V++
Sbjct: 439 ----AIGNLQSGFEMPSIHLAVITEGEMFSQK-------QRKARKQGRHVDN 479



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 763 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIEREMARGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  +++   +       +V   H ++   E  + I D   G++DVLV  ++
Sbjct: 823 QVYYLYNRVQGIQEMAAEINALVPGAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSI 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DIP    + + DADK G L     L   +GR+ R   +      D +   +  
Sbjct: 883 IETGVDIPNVNTLIVHDADKMG-LSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAE 939


>gi|323485663|ref|ZP_08091001.1| hypothetical protein HMPREF9474_02752 [Clostridium symbiosum
           WAL-14163]
 gi|323401013|gb|EGA93373.1| hypothetical protein HMPREF9474_02752 [Clostridium symbiosum
           WAL-14163]
          Length = 1179

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 92/514 (17%), Positives = 194/514 (37%), Gaps = 46/514 (8%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +   +   L+ G   S K   ++++ + +    +++  +   A +LY +++ F P   V 
Sbjct: 22  LERGQGPLLVSGCMDSQKAHLISELTKEIPWK-LIVTYDDQRARELYEDYRCFSPD--VY 78

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY- 282
            +             P  D            + R R    + L E +   V+++V  +  
Sbjct: 79  LY-------------PARDLLFYSSDIHGNLLTRQRMQVMKHLAEESGGAVITTVDGLMD 125

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +  +E+  +  +++  G++++  +L  SL    Y+R       G F V G  I+I+P  
Sbjct: 126 HLLPLENLKRQCLRVGSGEALDVDKLKVSLTGMGYERVAQVDGMGQFSVRGSIIDIYPL- 184

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            ED+ +R+ ++G++++ I  F P + + +  ++   IY  +  V  R      +  I++E
Sbjct: 185 TEDLPFRIELWGDEVDSIRTFDPESQRSVEQLDEALIYPATELVLTREEAAAGILKIEKE 244

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
               +  L ++ +  EA R+E  I+   E L+       + ++ RY           +  
Sbjct: 245 KNKYVKSLREQMKTEEAHRIESVISELTEGLKEGWRVHGLGSFIRYFCP-----ETVSFL 299

Query: 463 EYIPED-SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            Y PE    +F+DE      +   +            E G+ LP   D           +
Sbjct: 300 RYFPEGRLTVFMDEPLRLREKAEVVEEEFRESMVHRLENGYLLPGQAD----------FM 349

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEINLAAQ 580
            P   V++   G   L           I         V+ + S +   E +  ++    +
Sbjct: 350 FPAKAVMAMAAGDRTLMMLGLEQKLPGISVKKKFGLTVKSVNSYQNGFELLIKDLTRWKK 409

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +  R++L   ++  A  L   L E ++R      +   ++ +           +++V   
Sbjct: 410 EKYRVVLLSGSRTRASRLAGDLREYDLRAFC--PDEGQIQVL---------PGEIMVTYG 458

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
            L  G + P    V I + D  G +R K    +T
Sbjct: 459 NLHRGFEYPLIKFVVITEGDMFGGVRQKKKRKKT 492



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 18/192 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +  +    L +PPV+    +T V     E V + I+   
Sbjct: 779 VLTLTATPIPRTLHMSLIGIRDMSV----LEEPPVDRLPIQTYVMEYNDEMVREAIHREL 834

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++          +++T ++        V + H ++   E   I+ D   G  DVLV
Sbjct: 835 ARGGQVYYVYNRVNNIDEITNHVAALVPEANVTFAHGQMHEHELERIMLDFVNGDIDVLV 894

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DAD+ G  +    L Q  GR  R+  +          K +
Sbjct: 895 STTIIETGLDIPNANTIIIHDADRLGLSQ----LYQIRGRVGRSNRTSYAFLMYRRDKLL 950

Query: 698 QLAIDETTRRRE 709
           +   +E  +R +
Sbjct: 951 R---EEAEKRLQ 959


>gi|225387033|ref|ZP_03756797.1| hypothetical protein CLOSTASPAR_00783 [Clostridium asparagiforme
           DSM 15981]
 gi|225046851|gb|EEG57097.1| hypothetical protein CLOSTASPAR_00783 [Clostridium asparagiforme
           DSM 15981]
          Length = 1221

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 98/545 (17%), Positives = 190/545 (34%), Gaps = 70/545 (12%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI------VMAPNKILAAQLYS 211
             L + +        + G   S K   M ++ + +    +      V+  +   A ++Y 
Sbjct: 12  ENLAEALKKGRGPLQVTGTLDSQKVHLMYELGQDLPADGLHFPWKLVVTYDDTRAKEIYD 71

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +F+NF  +                   P  D            + R R S  R L+E   
Sbjct: 72  DFRNFTKN---------------VMLYPAKDLLFYSADIHGNLMTRQRISVLRHLMEDEG 116

Query: 272 CIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            +VV+++  +   +  ++     IV ++ G  ++ ++L   L    Y+R       G F 
Sbjct: 117 GVVVTTMDGLMDHLLPLKYMRDQIVTVEEGQVLDLEKLRDRLTAMGYERGAQVDGMGQFS 176

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + G  ++I+P   E+V  R+ M+ +++  I  F   + + +  +E + IY  S  V  R 
Sbjct: 177 IRGGIVDIYPL-TEEVPVRIEMWDDEVNSIRTFDVESQRSVEQLEQVTIYPASEVVLSRQ 235

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
            L + +  +++E          + +  EA R++  I   ++ +        ++NY RY  
Sbjct: 236 QLQSGIAKLEKEAASCEKAFRGQHKSEEAHRIKSMIAELVDGIREGWKLGGLDNYLRYFA 295

Query: 451 GRNPGEPPPTLFEYIP-EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
                E   +  +Y P E+SLLF+DE      +   +            E G+ LP   D
Sbjct: 296 -----EDTVSFLDYFPEENSLLFLDEPARLREKGETVEMEFRESMMHRLEKGYLLPGQTD 350

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQV 568
                      L P   V++       +         Q I+        V+ + S +   
Sbjct: 351 ----------LLYPAAAVLAHVQRPRAVMLTGLDQKLQGIKVNHKFGLVVKNVNSYQNSF 400

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH-------SEVKTLER 621
           E +  ++    ++G R++L   ++  A  L   L E +++             E    +R
Sbjct: 401 EMLIKDLTRWKKEGWRVILLSASRTRASRLASDLREYDLKAFCPDPPVGEEEGEAPGSDR 460

Query: 622 IEIIRDLRLGK-----------------------FDVLVGINLLREGLDIPECGLVAILD 658
              +   R G                          +LV    L  G + P    V I +
Sbjct: 461 GGALGSGRDGVPGQPGGGLSQQESTIQDRTQVRPGQILVTHGNLHRGFEYPLIKFVFITE 520

Query: 659 ADKEG 663
            D  G
Sbjct: 521 GDMFG 525



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 81/192 (42%), Gaps = 18/192 (9%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
             + ++ATP    L      I +  +    L +PPV+    +T V     E + + IN   
Sbjct: 823  VLTLTATPIPRTLHMSLAGIRDMSV----LEEPPVDRTPIQTYVMEYNEEMIREAINREL 878

Query: 580  QQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +G ++          +++   +        V + H +++  E   I+ D   G+ DVLV
Sbjct: 879  SRGGQVYYVYNRVTDIDEVANRVAALVPEAVVTFAHGQMREHELERIMADFINGEIDVLV 938

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  GLDIP    + + DAD+ G  +    L Q  GR  R+  +    YA  + K  
Sbjct: 939  STTIIETGLDIPNANTMIVHDADRMGLSQ----LYQLRGRVGRSNRT---SYAFLMYKRD 991

Query: 698  QLAIDETTRRRE 709
            +L  +E  +R +
Sbjct: 992  KLLKEEAEKRLQ 1003


>gi|310639514|ref|YP_003944272.1| transcription-repair coupling factor [Paenibacillus polymyxa SC2]
 gi|309244464|gb|ADO54031.1| transcription-repair coupling factor [Paenibacillus polymyxa SC2]
          Length = 1175

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 94/532 (17%), Positives = 196/532 (36%), Gaps = 73/532 (13%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
           A +  GI S  K QL+ G++GS +   MA + E   RP +VM  N   A ++  + +   
Sbjct: 16  ASIAAGISSGMKEQLISGLSGSSRQVLMAALAEDTGRPLMVMTHNMFAAQKIADDLQEAL 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
             + V  +             P  +    + +  + +    R        +    +VV  
Sbjct: 76  SPDQVLLY-------------PANELVAAEAAISSPETLSQRIDVLIRCAQGFRGVVVVP 122

Query: 278 VSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
            S +  +    E++ +  V+LK G++++ +  L  +V+  Y+R +    RG   V G  I
Sbjct: 123 FSGVRRLLPIPETWREARVELKEGETIQLEAFLLHMVEMGYQRVERVESRGEMSVRGGII 182

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           + +P       +RV +F ++I+ I  F P   + +  V+ + +      +     ++ A 
Sbjct: 183 DFYPMTT-RWGYRVELFDDEIDSIRMFDPQDQRSVEKVQEVTVTPCKEVIASHQRMDQAA 241

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
                 L+ +L ++         Q L++ I  ++E+L        I  Y   L       
Sbjct: 242 DAAAMLLEEQLDKMTDR---QAKQHLKEEIHREIELLREHVYFDEIYKYISLLYPER--- 295

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TL +Y+P D++L +DE    +     + R +      L + G  LP  ++       
Sbjct: 296 --KTLADYMPADTILIIDEPARMLETARQLERDESEWNLHLLQNGKTLP-QLELSDNSDN 352

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQI--IRPTGLVDPPVE-IRSARTQVEDVYD 573
                R  T+ +S             I + Q+   +P  +++     ++    Q+  +  
Sbjct: 353 LLYNRRFQTLFLS-------------IFLRQVPHTQPQNILNFICRGMQDFHGQMNVLKA 399

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E++   + G ++++        + +   L +  I       +  T+              
Sbjct: 400 EMDRWRKAGTQVMMLASGDERLDRMRRVLQDYGI-------DEPTM-------------- 438

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR-AARNVNS 684
                I  L+ G ++P   L  I + +            Q   R   R+V++
Sbjct: 439 ----AIGNLQSGFEMPSIHLAVITEGEMFSQK-------QRKARKQGRHVDN 479



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 69/178 (38%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 763 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIEREMARGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  +++   +     + +V   H ++   E  + I D   G++DVLV  ++
Sbjct: 823 QVYYLYNRVQGIQEMAAEINALVPDAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSI 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DIP    + + DADK G L     L   +GR+ R   +      D +   +  
Sbjct: 883 IETGVDIPNVNTLIVHDADKMG-LSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAE 939



 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKT-FTMA 186
           ++    S +   F+    Y  + DQ  AI ++ K +  SR   +LL G  G GKT   + 
Sbjct: 593 FAFEKDSPEQQEFEDMFPYDETRDQVRAIEEIKKDMEQSRPMDRLLCGDVGYGKTEVAIR 652

Query: 187 KVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPH 219
              ++    +   V+ P  ILA Q Y  F+  F  
Sbjct: 653 AAFKSAIEGKQVAVLVPTTILAQQHYETFRERFSG 687


>gi|317499346|ref|ZP_07957616.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893381|gb|EFV15593.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 948

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 95/511 (18%), Positives = 192/511 (37%), Gaps = 51/511 (9%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA-IVMAPNKILAAQLYSEFKNF 216
            QL   I       L+ G T + K    + +    ++   I++ P++  A Q      + 
Sbjct: 13  RQLKDEIEDYCGPVLVSGCTDTAKWHLTSLIGNHKKKQFKIIIVPDENKARQWVE--ASH 70

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           F    V+             Y+P  D            I R R  A + +++      V 
Sbjct: 71  FFGEKVQ-------------YIPAKDPLFYTADVHGNAIARDRMLAIKKIVDDKCGTFVM 117

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           ++  +   +  +       +  K+G+++E+  +    V + Y++       G F V G  
Sbjct: 118 TIDAVMDQVVPLSDIKNHKMTFKMGETLEEATIAEEFVARGYEKAPFVEAPGEFAVRGGI 177

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+IFP + ++  +R+ ++G++I+ I  F   + + I  V+T+ IY  S  +  +P +   
Sbjct: 178 IDIFP-YTQESPYRIELWGDEIDSIRSFDKESQRSIEEVDTLTIYPASEIILNQPRIEHG 236

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ ++E+ +    + +KE +  +  RL + +    E L        +E Y  Y       
Sbjct: 237 LRNMEEDYEKLSQKFKKEKKYDQEVRLRKEMDRVREELRELHMLIGVEGYLPYFY----- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E    + +Y PE+S++++DE      +    Y        +  E G+ LP    N    +
Sbjct: 292 ENTECILDYFPEESMIYMDEPKHIRERADAFYLEFSESMKSRLEGGYLLPKQA-NTVTDY 350

Query: 516 EE--WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
           E   +   +   +  S             I   ++ R   L      I+S     E +  
Sbjct: 351 ESILYQIEKHKMLCYSI--------LSAEINDFRVART--LFMDTKSIQSYNNSFEQLVK 400

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK- 632
           ++     +  RI++   +   A+ L+  L E  + V Y              +DL+ G  
Sbjct: 401 DLTKYQSKDYRIVVASPSVTRAKRLSSDLRENGLVVTY-------------DKDLKYGVE 447

Query: 633 -FDVLVGINLLREGLDIPECGLVAILDADKE 662
              ++V    L  G++ P    V I + D  
Sbjct: 448 AGQIVVTAGKLLTGIEYPAAKWVLISEGDIF 478



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 12/165 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      I +  +    L +PP + R+ +T V     E V + +    
Sbjct: 778 VLSLSATPIPRTLHMSLIGIRDMSV----LEEPPHDRRAIQTYVMEYNEELVKEAVYREM 833

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++           ++T  L     + +V + H ++K  E  EI+      + DVLV
Sbjct: 834 TRGGQVYYVYNRVNNIAEVTAELQRLLPDAKVAFAHGQMKERELEEIMMGFMNHEIDVLV 893

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
              ++  GLDIP    + I DA++ G L     L   +GR+ RN 
Sbjct: 894 STTIIETGLDIPNVNTMIIHDANQLG-LSQLYQLRGRVGRSNRNA 937


>gi|291540815|emb|CBL13926.1| hypothetical protein RO1_36780 [Roseburia intestinalis XB6B4]
          Length = 471

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 94/496 (18%), Positives = 187/496 (37%), Gaps = 44/496 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
                L  G+H    +  + G   + K   M  V        I++   +  A ++Y E++
Sbjct: 12  KEFETLSAGVHDLRGIAQISGCIDAAKPHIMYSV-NNGSGNRIIVTFQEQRAKEIYEEYR 70

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            F P                 AY P  D    +       +   R +A + L E + C +
Sbjct: 71  FFDPK---------------AAYYPAKDILFYQSDIRGNVLTAERINALKMLAEESSCTI 115

Query: 275 VSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           +++   +   +   E + + + ++ +GD +  +EL   LV+  Y++       G F V G
Sbjct: 116 ITTFDGLMNPMPMPEKFIREVKKVSVGDILNLEELTKHLVELGYEKNYQAETMGEFSVRG 175

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++IFP   ED  +R+  +G++++ I  F   + + I N+E I IY     V       
Sbjct: 176 GILDIFPL-TEDNPFRIEFWGDEVDSIRSFDAESQRSIENLEEISIYPACELVLTAEERQ 234

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             +K I +E      +L KE +  EA R +       E     G    ++ Y  Y     
Sbjct: 235 EGIKRILKEADKVSAKLRKEMKTEEAHRTKSAAAQIAEEAGELGISAGLDAYLSYFC--- 291

Query: 454 PGEPPPTLFEYIP-EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
             E   +L +Y   E++++FVDE   +I +                E G+ LP     R 
Sbjct: 292 --EERVSLLDYFNRENTVIFVDELARSIERGMVTETEYSESMKQRLEKGYILPGQ--MRE 347

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           L F     L     +   +  + +L+     I E+ +  +        +       + + 
Sbjct: 348 L-FSCKEILAKMEKMACISLVALDLKNSHVDIKEKFVIDSKT------VNPYNNSFDLLV 400

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            ++    + G R++L   ++  A+ L E L    +   Y           +   +++ G+
Sbjct: 401 KDLTRYKKNGYRVILLSGSRTRAKRLAEDLMAEELNAFY---------SEDFDHEVKPGE 451

Query: 633 FDVLVGINLLREGLDI 648
             ++ G   +++ ++I
Sbjct: 452 --IMTGYGKIKKVMNI 465


>gi|170756439|ref|YP_001783179.1| transcription-repair coupling factor [Clostridium botulinum B1 str.
           Okra]
 gi|169121651|gb|ACA45487.1| transcription-repair coupling factor [Clostridium botulinum B1 str.
           Okra]
          Length = 1168

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 90/520 (17%), Positives = 199/520 (38%), Gaps = 51/520 (9%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           + +    S D       LL  I+  +      G++ SGK + ++ V   +    ++   +
Sbjct: 6   LVSPLSLSED----FKSLLNNINLNKFPIGAYGLSDSGKNYFISNVFANVDESLVIFTHS 61

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
            + A ++Y +   +                    Y+P  +       +I+  +   R   
Sbjct: 62  DVEARKIYEDLSLYTTE---------------VYYLPTKEVVFYNIYAISGDLRWERLKV 106

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
              +L     I+V+ +  +      +    +   +L +GD +E K L   L+K  Y+R D
Sbjct: 107 INEILSPKKKIIVTCIESLESAYIPKELYTKYTFKLSVGDIIEIKLLEEKLIKSGYERVD 166

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           I   +G F V G  I+I+P    +  +R+  F ++I+ I  F   + + I  V  I I+ 
Sbjct: 167 IVENKGEFSVRGGIIDIYPPISSE-PYRLEFFDDEIDSIRNFNVNSQRSIEKVNNINIFP 225

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
               +     ++  +K IK +L   +++L    +  + ++++  I  +LE L  + S ++
Sbjct: 226 AKEIILEEENISLGLKNIKTDLDKLVLKL---NKKEDKEKIQSIINSNLEQLNESWSFEN 282

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           I+ +  Y   +       +L +YI E SL+ +D+    + ++   Y           E G
Sbjct: 283 IDTFLPYFYNKT-----NSLLDYI-EGSLIIIDDVKRCLGKLDSTYLEFNEDYDKFLEKG 336

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
             LP   +       +   +               +++    +  + +    L      +
Sbjct: 337 CILPKQAEIV----HDKERIIEQLEF-KKIINIENIKKTIDRLKPKSV----LTFNQTTL 387

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           +    ++E + ++I    ++  +IL+   T+   E L  +L +  +   Y          
Sbjct: 388 QGYNGKIEFLIEDIKEKKKEKYKILILSGTRSRGERLVNHLRDMGVESSY---------- 437

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
            +I+R+++ G+  V++       G    +  L  I D D 
Sbjct: 438 KDIVREIKPGE--VVITFGNQGNGFQYYDIKLSVISDKDI 475



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +I        PV+        + + D I     +G 
Sbjct: 775 VLTLSATPIPRTLHMSLVGVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGG 834

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I           ++  Y+ +     R    H ++K  E   ++ D    KFD+L+   +
Sbjct: 835 QIYFVYNRVESIHEMASYISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I DADK G L     L   +GR  R     +    D I       +
Sbjct: 895 IETGMDIKNVNTMIIYDADKMG-LSQLYQLRGRVGRTNRMAYCYLTYKRDKI-------L 946

Query: 702 DETTRRREKQLE 713
            E   +R K ++
Sbjct: 947 TEVAEKRLKAIK 958


>gi|168181008|ref|ZP_02615672.1| transcription-repair coupling factor [Clostridium botulinum NCTC
           2916]
 gi|226950995|ref|YP_002806086.1| transcription-repair coupling factor [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668078|gb|EDT80057.1| transcription-repair coupling factor [Clostridium botulinum NCTC
           2916]
 gi|226842319|gb|ACO84985.1| transcription-repair coupling factor [Clostridium botulinum A2 str.
           Kyoto]
          Length = 1168

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 89/520 (17%), Positives = 199/520 (38%), Gaps = 51/520 (9%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           + +    S D       LL  I+  +      G++ SGK + ++ +   +    ++   +
Sbjct: 6   LVSPLSLSED----FKSLLNNINLNKFPIGAYGLSDSGKNYFISNIFANVDESLVIFTHS 61

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
            + A ++Y +   +                    Y+P  +       +I+  +   R   
Sbjct: 62  DVEARKIYEDLSLYTTE---------------VYYLPTKEVVFYNIYAISGDLRWERLKV 106

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
              +L     I+V+ +  +      +    +   +L +GD +E K L   L+K  Y+R D
Sbjct: 107 INEILSPKKKIIVTCIESLESAYIPKELYTKYTFKLSVGDIIEIKLLEEKLIKSGYERVD 166

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           I   +G F V G  I+I+P    +  +R+  F ++I+ I  F   + + I  V  I I+ 
Sbjct: 167 IVENKGEFSVRGGIIDIYPPISSE-PYRLEFFDDEIDSIRNFNVNSQRSIEKVNNINIFP 225

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
               +     ++  +K IK +L   +++L    +  + ++++  I  +LE L  + S ++
Sbjct: 226 AKEIILEEENISLGLKNIKTDLDKLVLKL---NKKEDKEKIQSIINSNLEQLNESWSFEN 282

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           I+ +  Y   +       +L +YI E SL+ +D+    + ++   Y           E G
Sbjct: 283 IDTFLPYFYNKT-----NSLLDYI-EGSLIIIDDVKRCLGKLDSTYLEFNEDYDKFLEKG 336

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
             LP   +       +   +               +++    +  + +    L      +
Sbjct: 337 CILPKQAEIV----HDKERIIEQLEF-KKIINIENIKKTIDRLKPKSV----LTFNQTTL 387

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           +    ++E + ++I    ++  +IL+   T+   E L  +L +  +   Y          
Sbjct: 388 QGYNGKIEFLIEDIKEKKKEKYKILILSGTRSRGERLVNHLRDMGVESSY---------- 437

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
            +I+R+++ G+  V++       G    +  L  I D D 
Sbjct: 438 KDIVREIKPGE--VVITFGNQGNGFQYYDIKLSVISDKDI 475



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +I        PV+        + + D I     +G 
Sbjct: 775 VLTLSATPIPRTLHMSLVGVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGG 834

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I           ++  Y+ +     R    H ++K  E   ++ D    KFD+L+   +
Sbjct: 835 QIYFVYNRVESIHEMASYISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I DADK G L     L   +GR  R     +    D I       +
Sbjct: 895 IETGMDIKNVNTMIIYDADKMG-LSQLYQLRGRVGRTNRMAYCYLTYKRDKI-------L 946

Query: 702 DETTRRREKQLE 713
            E   +R K ++
Sbjct: 947 TEVAEKRLKAIK 958



 Score = 38.2 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+ +  Y  + DQ  AI  + + + S +   +LL G  G GKT   +    +A+   +  
Sbjct: 617 FEEEFPYEETPDQLLAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQV 676

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
             + P  ILA Q Y+ FK  F  
Sbjct: 677 AFLVPTTILAQQHYNNFKQRFWD 699


>gi|220930453|ref|YP_002507362.1| transcription-repair coupling factor [Clostridium cellulolyticum
           H10]
 gi|220000781|gb|ACL77382.1| transcription-repair coupling factor [Clostridium cellulolyticum
           H10]
          Length = 1174

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 92/505 (18%), Positives = 190/505 (37%), Gaps = 41/505 (8%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           LL  +        ++G + S K   +  +   +Q+  + +  N++ A ++Y +F  F   
Sbjct: 17  LLSNVREERGPVSVIGPSDSQKVHLIYSLCTHLQKRGLYITYNEMQARRVYDDFSFFLGD 76

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           + + Y              P  +T +    + +  I   R     + LE N  +VV S  
Sbjct: 77  DVLYY--------------PPKETMLYNVEARSNDIIYQRTKTLLNCLEGNYKMVVMSAE 122

Query: 280 CIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
            +  + S    + + I+   +G  V   EL+S LV   Y+R +    +  F V G  I++
Sbjct: 123 ALIQMISPVELFREGIMDFYVGSQVNLDELVSKLVLYGYERVESVEGKAQFAVRGGIIDV 182

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           F +   +   R+ +F  D++ I  F   T +   +++  +I      V    +    +  
Sbjct: 183 F-AVNSEHPVRIELFDTDVDSIRHFDETTQRSTNSIDECRIAPARDVVYKEVSREGIISK 241

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           IK++L   + +L+++      + + +R+  D++ L        I+ Y  Y+      E P
Sbjct: 242 IKKDLADYIKKLKQKENREGVKNISKRVEEDIDSLIEHHYFPGIDRYYPYIL-----ESP 296

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
            ++ +YI  +S++ +DE+     +I  +         +L E G  LP             
Sbjct: 297 ASVIDYIESESIIIMDETLRISQRIENVELEHEELAKSLLEKGGILPKGAQWTFSTDSIV 356

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           + +       + T  +            QI  P    +      S +  ++ + D+I   
Sbjct: 357 DRILN---FRTITLSAISSNNSLIRPYNQISIPCKSGN------SYQNHIDLLVDDIGQL 407

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++  +I++          L E L    I   Y           +   + R+   +V+V 
Sbjct: 408 RKREYKIIVLSGPSGRGHRLVETLATNEIMSSY-----------KEHPEYRIQNGEVVVT 456

Query: 639 INLLREGLDIPECGLVAILDADKEG 663
              L++G + P    V I D +  G
Sbjct: 457 HGSLQKGFEYPTAAFVVISDIEVFG 481



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 79/205 (38%), Gaps = 17/205 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVY 572
           E+   L+P    + ++ATP    L      I +  ++        PV+       +E + 
Sbjct: 767 EKLKTLKPNVDVLTLTATPIPRTLHMSLVGIRDISVLEDPPEERYPVQTYVMEYNMELIR 826

Query: 573 DEINLAAQQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           D I     +  ++       R  +    ++ + + +  + V   H ++   E  +++   
Sbjct: 827 DGIIREMARDGQVFYMYNRVRGIDLKAQEIRKMIPDARVAVA--HGKMNEKELEDVMYGF 884

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G++DVLV   ++  GLD+P    + + DAD+ G  +    L Q  GR  R+       
Sbjct: 885 INGEYDVLVCTTIIESGLDMPNVNTIVVEDADRMGLSQ----LYQIRGRVGRSNRLAYAY 940

Query: 689 YADTITKSIQLAIDETTRRREKQLE 713
                 K     + E   +R + ++
Sbjct: 941 ITYKKDK----VLSEVAEKRLQAIK 961



 Score = 42.8 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 76/228 (33%), Gaps = 39/228 (17%)

Query: 15  IQSISTRVDDLDYFSFEEKQ---LEVDKTMVADAMRRIRSEAGKHRKNAAKRMLIHQREN 71
           I+++S      DY     ++   L +    +    + I SE    R N   ++   +   
Sbjct: 523 IENLSVGEVKRDYLKIRYQEGDFLYIPTNQLDLLQKYIGSEGKTPRVN---KLGGTEWAK 579

Query: 72  TASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSI 131
           T S+ +           +  ++++ + +    Q   R     +   ++  +W        
Sbjct: 580 TKSRVK-----------ESLQQLAAELIKLYAQ---RQSAKGHSFSED-TVWQRQFEELF 624

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKT-FTMAKVI 189
                          Y  + DQ   I ++ K +       +LL G  G GKT   +  V 
Sbjct: 625 --------------PYQETDDQLKCIDEIKKDMESEGLMDRLLCGDVGYGKTEVAIRAVF 670

Query: 190 EAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +A+   +    +AP  ILA QLY  FK       V   V        E
Sbjct: 671 KAVMDGKQVAYLAPTTILAQQLYENFKTRMNDFPVTVDVMSRFRTPAE 718


>gi|56418583|ref|YP_145901.1| transcription-repair coupling factor [Geobacillus kaustophilus
           HTA426]
 gi|56378425|dbj|BAD74333.1| transcription-repair coupling factor [Geobacillus kaustophilus
           HTA426]
          Length = 1177

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 93/553 (16%), Positives = 190/553 (34%), Gaps = 55/553 (9%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              +  +++G+H R K QL+ G++GS ++  ++ + +   RP +V++ N   A ++Y + 
Sbjct: 11  NQDVRTIIEGLHVRLKEQLVAGLSGSARSVFISTLYKETGRPLLVVSHNLFQAQKMYDDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            +      V  +                +    + +  + ++   R       ++    +
Sbjct: 71  VSLLGPEDVFLYS-------------VNEVIAAEMAVASPELKAQRLEIMNHWVQGGKGV 117

Query: 274 VVSSVSCIYGI-GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           VV  V+ +  +      + Q +    +G   + +      V+  YKR       G F V 
Sbjct: 118 VVCPVAGLRRLLPPPSLWKQYLFTFSVGQEFDVERCKQKFVQMGYKRVGTVSAPGEFSVR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  I+I+P   E + +R+ +F  +IE I  F P   +    +E I I      +    T 
Sbjct: 178 GGIIDIYPLTAE-LPYRIELFDTEIESIRTFTPDDQRSQGQIERIMIGPADEIILDGETR 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++ I+  L   L  ++ E      QR+ + I  +LE L      +    Y       
Sbjct: 237 RRGIERIEAGLASSLETMKDEA---AKQRMYEHIHAELEQLREGQEIEQQYKYMSLFY-- 291

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   +L +Y+PED +L +DE          + R +     +L + G      +   P
Sbjct: 292 ---EKVASLLDYLPEDGVLLMDEMSRLQEAAERLDREEAEWYTSLLDGG----KMIHGVP 344

Query: 513 LRF---EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           L     E     R   + +S       L        + ++  T        +++   Q+ 
Sbjct: 345 LSHSFSELLQKHRFQRVYLS-----LFLRHVPYAHPQNVVNITCKQ-----MQNFHGQMA 394

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +  E+    +    ++         + L   L +  I    +  +   L          
Sbjct: 395 LLQSEVERWTKANYAVVFLAPNAERVKKLQSLLQDYEIDALPLARDAALLH--------- 445

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKV 686
            GK  +L     L  G ++P   +  I + +       +    Q +    R       +V
Sbjct: 446 -GKCQLL--EGDLNTGFELPLQKIAVITEEELFKKRVKRPVRRQKLSNAERIKSYAELQV 502

Query: 687 ILYADTITKSIQL 699
             Y   +   I  
Sbjct: 503 GDYVVHVNHGIGK 515



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 69/183 (37%), Gaps = 11/183 (6%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II        PV+        E V + I     +  
Sbjct: 774 VLTLTATPIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEYTPELVKEAIERELARDG 833

Query: 584 RILLTVLTKRM----AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++             AE++ + + E   RV Y+H  +   E    I     G++DVLV  
Sbjct: 834 QVFFLYNHIEDIDLKAEEIAQLVPEA--RVTYVHGRMSETELESTILAFLEGQYDVLVTT 891

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 892 TIIETGIDIPNVNTLIVYDADRMGLSQ----LYQLRGRVGRSNRVAYAYFTYRKDKVLNE 947

Query: 700 AID 702
           A +
Sbjct: 948 AAE 950


>gi|77410047|ref|ZP_00786599.1| excinuclease ABC, chain B [Streptococcus agalactiae COH1]
 gi|77171344|gb|EAO74661.1| excinuclease ABC, chain B [Streptococcus agalactiae COH1]
          Length = 190

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 107/180 (59%), Positives = 138/180 (76%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           KD   F++ + Y PSGDQP AI  L+  I   EK Q+L G TG+GKT+TM++VI  + +P
Sbjct: 5   KDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A NK LA QLY EFK FFP NAVEYFVSYYDYYQPEAYVP +DTYIEK+SS+N++I
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEI 124

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           D++RHSAT SLLERND IVV+SVSCIYG+GS + Y+  +V L+ G  + + +LL++LV  
Sbjct: 125 DKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNNLVDI 184


>gi|167766179|ref|ZP_02438232.1| hypothetical protein CLOSS21_00673 [Clostridium sp. SS2/1]
 gi|167712259|gb|EDS22838.1| hypothetical protein CLOSS21_00673 [Clostridium sp. SS2/1]
          Length = 1173

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 94/511 (18%), Positives = 192/511 (37%), Gaps = 51/511 (9%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA-IVMAPNKILAAQLYSEFKNF 216
            QL   +       L+ G T + K    + +    ++   I++ P++  A Q      + 
Sbjct: 13  RQLKDEVEDYCGPVLVSGCTDTAKWHLTSLIGNHKKKQFKIIIVPDENKARQWVE--ASH 70

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           F    V+             Y+P  D            I R R  A + +++      V 
Sbjct: 71  FFGEKVQ-------------YIPAKDPLFYTADVHGNAIARDRMLAIKKIVDDKCGTFVM 117

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           ++  +   +  +       +  K+G+++E+  +    V + Y++       G F V G  
Sbjct: 118 TIDAVMDQVVPLSDIKNHKMTFKMGETLEEATIAEEFVARGYEKAPFVEAPGEFAVRGGI 177

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+IFP + ++  +R+ ++G++I+ I  F   + + I  V+T+ IY  S  +  +P +   
Sbjct: 178 IDIFP-YTQESPYRIELWGDEIDSIRSFDKESQRSIEEVDTLTIYPASEIILNQPRIEHG 236

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ ++E+ +    + +KE +  +  RL + +    E L        +E Y  Y       
Sbjct: 237 LRNMEEDYEKLSQKFKKEKKYDQEARLRKEMDRVREELRELHMLIGVEGYLPYFY----- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E    + +Y PE+S++++DE      +    Y        +  E G+ LP    N    +
Sbjct: 292 ENTECILDYFPEESMIYMDEPKHIRERADAFYLEFSESMKSRLEGGYLLPKQA-NTVTDY 350

Query: 516 EE--WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
           E   +   +   +  S             I   ++ R   L      I+S     E +  
Sbjct: 351 ESILYQIEKHKMLCYSI--------LSAEINDFRVART--LFMDTKSIQSYNNSFEQLVK 400

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK- 632
           ++     +  RI++   +   A+ L+  L E  + V Y              +DL+ G  
Sbjct: 401 DLTKYQSKDYRIVVASPSVTRAKRLSSDLRENGLVVTY-------------DKDLKYGVE 447

Query: 633 -FDVLVGINLLREGLDIPECGLVAILDADKE 662
              ++V    L  G++ P    V I + D  
Sbjct: 448 AGQIVVTAGKLLTGIEYPAAKWVLISEGDIF 478



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 19/191 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      I +  +    L +PP + R+ +T V     E V + +    
Sbjct: 778 VLSLSATPIPRTLHMSLIGIRDMSV----LEEPPHDRRAIQTYVMEYNEELVKEAVYREM 833

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++           ++T  L     + +V + H ++K  E  EI+      + DVLV
Sbjct: 834 TRGGQVYYVYNRVNNIAEVTAELQRLLPDAKVAFAHGQMKERELEEIMMGFMNHEIDVLV 893

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA++ G  +    L Q  GR  R+  +            +
Sbjct: 894 STTIIETGLDIPNVNTMIIHDANQLGLSQ----LYQLRGRVGRSNRNAFAFLMYKKNTLL 949

Query: 698 QLAIDETTRRR 708
           +    ET  +R
Sbjct: 950 K----ETAEKR 956


>gi|297528423|ref|YP_003669698.1| transcription-repair coupling factor [Geobacillus sp. C56-T3]
 gi|297251675|gb|ADI25121.1| transcription-repair coupling factor [Geobacillus sp. C56-T3]
          Length = 1177

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/553 (16%), Positives = 190/553 (34%), Gaps = 55/553 (9%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              +  +++G+H R K QL+ G++GS ++  ++ + +   RP +V++ N   A ++Y + 
Sbjct: 11  NQDVRTIIEGLHVRLKEQLVAGLSGSARSVFISTLYKETGRPLLVVSHNLFQAQKMYDDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            +      V  +                +    + +  + ++   R        +    +
Sbjct: 71  VSLLGPEDVFLYSMN-------------EVIAAEMAVASPELKAQRLEIMNHWAQGGKGV 117

Query: 274 VVSSVSCIYGI-GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           VV  V+ +  +      + Q +    +G   + +      V+  YKR       G F V 
Sbjct: 118 VVCPVAGLRRLLPPPSLWKQYLFTFSVGQEFDVERCKQKFVQMGYKRVGTVSAPGEFSVR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  I+I+P  +E + +R+ +F  +IE I  F P   +    +E I I      +    T 
Sbjct: 178 GGIIDIYPLTVE-LPYRIELFDTEIESIRTFTPDDQRSQGQIERIMIGPADEIILDGETR 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++ I+  L   L  ++ E      QR+ + I  +LE L      +    Y       
Sbjct: 237 RRGIERIEAGLASSLETMKDEA---AKQRMYEHIHAELEQLREGQEIEQQYKYMSLFY-- 291

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   +L +Y+PED +L +DE          + R +     +L + G      +   P
Sbjct: 292 ---EKVASLLDYLPEDGVLLMDEMSRLQEAAERLDREEAEWYTSLLDGG----KMIHGVP 344

Query: 513 LRF---EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           L     E     R   + +S       L        + ++  T        +++   Q+ 
Sbjct: 345 LSHSFSELLQKHRFQRVYLS-----LFLRHVPYAHPQNVVNITCKQ-----MQNFHGQMA 394

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +  E+    +    ++         + L   L +  I    +  +   L          
Sbjct: 395 LLQSEVERWEKANYAVVFLAPNAERVKKLQSLLQDYEIDALPLARDAALLH--------- 445

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKV 686
            GK  +L     L  G ++P   +  I + +       +    Q +    R       +V
Sbjct: 446 -GKCQLL--EGDLNTGFELPLQKIAVITEEELFKKRVKRPVRRQKLSNAERIKSYAELQV 502

Query: 687 ILYADTITKSIQL 699
             Y   +   I  
Sbjct: 503 GDYVVHVNHGIGK 515



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 68/183 (37%), Gaps = 11/183 (6%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II        PV+        E   + I     +  
Sbjct: 774 VLTLTATPIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEYTPELAKEAIERELARDG 833

Query: 584 RILLTVLTKRM----AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++             AE++ + + E   RV Y+H  +   E    I     G++DVLV  
Sbjct: 834 QVFFLYNHIEDIDLKAEEIAQLVPEA--RVTYVHGRMSETELESTILAFLEGQYDVLVTT 891

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 892 TIIETGIDIPNVNTLIVYDADRMGLSQ----LYQLRGRVGRSNRVAYAYFTYRKDKVLNE 947

Query: 700 AID 702
           A +
Sbjct: 948 AAE 950


>gi|160939694|ref|ZP_02087042.1| hypothetical protein CLOBOL_04586 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437485|gb|EDP15249.1| hypothetical protein CLOBOL_04586 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1200

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 91/527 (17%), Positives = 190/527 (36%), Gaps = 54/527 (10%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP-AIVMAPNKILAAQLYSEFKNF 216
             L++ + S +    + G   S K   M ++ EA      +V+  +   A ++Y + ++ 
Sbjct: 12  DNLVQALKSGKGPLQVTGTLDSQKVHLMYELGEASAFSWKLVVTYDDTRAKEIYDDLRS- 70

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                   F S    Y      P  D            + R R +  R L+E  + +VV+
Sbjct: 71  --------FTSRVWLY------PAKDLLFYSADIHGNLMARQRIAVLRRLMEDREGVVVT 116

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           ++  +   +  ++   +  + ++ G  ++       L+   Y+R       G F + G  
Sbjct: 117 TMDGLMDHLLPLKYLREQSITVESGQVIDLDVWKERLIAMGYERVAQVDGMGQFSIRGGI 176

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++IFP   E+V  R+ ++ ++++ I  F   + + +  +E I IY  +  V     L   
Sbjct: 177 VDIFPL-TEEVPVRIELWDDEVDSIRTFDLESQRSVEQLENITIYPAAEVVLSADQLAAG 235

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ +++E K     L ++ +  EA R+   I      L+       ++ Y RY       
Sbjct: 236 IRRLEKEEKTYEKALREQHKPEEAHRIHTIIGELRSGLDEGWRIGGLDAYIRYFCP---- 291

Query: 456 EPPPTLFEYIPE-DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
               +  EY P+ +S++F+DE      +   +            E G+ LP         
Sbjct: 292 -DTVSFLEYFPQGESVIFLDEPARLKEKGETVELEFRESMVHRLEKGYLLPGQT------ 344

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYD 573
                 L P   +++     + +           ++        V+ + S +   E +  
Sbjct: 345 ----ELLYPAAEILARMQKPYAVMLTGLDQKLPGMKVNQKFSIDVKNVNSYQNSFEILIK 400

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV----------------- 616
           ++    ++G R++L   ++  A  L   L E ++R                         
Sbjct: 401 DLTRWKKEGYRVILLSASRTRASRLASDLREYDLRAYCPDGREGESGNAGGEGAGSADTG 460

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                   +R +R G+  +LV    L  G + P    V I + D  G
Sbjct: 461 NPGAVNTSVRKVRPGE--ILVTYGNLHRGFEYPLLKFVFITEGDMFG 505



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 18/192 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +  +    L +PPV+    +T V     E V + IN   
Sbjct: 803 VLTLTATPIPRTLHMSLAGIRDMSV----LEEPPVDRTPIQTYVMEYNEEMVREAINREL 858

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +++   +     +  V + H +++  E   I+ D   G+ DVLV
Sbjct: 859 ARNGQVYYVYNRVTDIDEVAGRVQALVPDAVVTFAHGQMREHELERIMADFINGEIDVLV 918

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + I DAD+ G  +    L Q  GR  R+  +          K +
Sbjct: 919 STTIIETGLDISNANTMIIHDADRMGLSQ----LYQLRGRVGRSNRTSYAFLMYKRDKLL 974

Query: 698 QLAIDETTRRRE 709
           +   +E  +R +
Sbjct: 975 R---EEAEKRLQ 983


>gi|170759697|ref|YP_001788879.1| transcription-repair coupling factor [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169406686|gb|ACA55097.1| transcription-repair coupling factor [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 1168

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/520 (16%), Positives = 198/520 (38%), Gaps = 51/520 (9%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           + +    S D       LL  I+  +      G++ SGK + ++ +   +    ++   +
Sbjct: 6   LVSPLSLSED----FKSLLNNINLNKFPIGAYGLSDSGKNYFISNIFANVDESLVIFTHS 61

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
            + A ++Y +   +                    Y+P  +       +I+  +   R   
Sbjct: 62  DVEARKIYEDLSLYTTE---------------VYYLPTKEVVFYNIYAISGDLRWERLKV 106

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
              +L     I+V+ +  +      +    +   +L +GD +E K L   L+K  Y+R D
Sbjct: 107 INEILSPKKKIIVTCIESLESAYIPKELYTKYTFKLSVGDIIEIKLLEEKLIKSGYERVD 166

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           I   +G F V G  I+I+P    +  +R+  F ++I+ I  F   + + I  V  I I+ 
Sbjct: 167 IVENKGEFSVRGGIIDIYPPISSE-PYRLEFFDDEIDSIRNFNVNSQRSIEKVNNINIFP 225

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
               +     ++  +K IK +L   +++L    +  + ++++  I  +LE L  + S ++
Sbjct: 226 AKEIILEEENISLGLKNIKTDLDKLVLKL---NKKEDKEKIQSIINSNLEQLNESWSFEN 282

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           I+ +  Y   +       +L +YI E SL+ +D+    + ++   Y             G
Sbjct: 283 IDTFIPYFYNKT-----NSLLDYI-EGSLIIIDDVKRCLGKLDSTYLEFNEDYNKFLGKG 336

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
             LP   +       +   +               +++    +  + +    L      +
Sbjct: 337 CILPKQAEIV----HDKERMIEQLEF-KKIINIENIKKTIDRLKPKSV----LTFNQTTL 387

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           +    ++E + ++I    ++  +IL+   T+   E L  +L +  +   Y          
Sbjct: 388 QGYNGKIEFLIEDIKEKKKEKYKILILSGTRSRGERLVNHLRDMGVESSY---------- 437

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
            +I+R+++ G+  V++       G    +  L  I D D 
Sbjct: 438 KDIVREIKPGE--VVITFGNQGNGFQYYDIKLSVISDKDI 475



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +I        PV+        + + D I     +G 
Sbjct: 775 VLTLSATPIPRTLHMSLVGVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGG 834

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I           ++  Y+ +     R    H ++K  E   ++ D    KFD+L+   +
Sbjct: 835 QIYFVYNRVESIHEMASYISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I DADK G L     L   +GR  R     +    D I       +
Sbjct: 895 IETGMDIKNVNTMIIYDADKMG-LSQLYQLRGRVGRTNRMAYCYLTYKRDKI-------L 946

Query: 702 DETTRRREKQLE 713
            E   +R K ++
Sbjct: 947 TEVAEKRLKAIK 958


>gi|239629010|ref|ZP_04672041.1| transcription-repair coupling factor [Clostridiales bacterium
           1_7_47_FAA]
 gi|239519156|gb|EEQ59022.1| transcription-repair coupling factor [Clostridiales bacterium
           1_7_47FAA]
          Length = 1186

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 91/513 (17%), Positives = 189/513 (36%), Gaps = 37/513 (7%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP-AIVMAPNKILAAQLYSEFKNF 216
             L++ ++  +    + G   S K   M ++ E    P  +V+  +   A ++Y +F+NF
Sbjct: 7   DNLIQALNKGKGPLQVTGTLDSQKVHLMYELGEGAAFPWKLVVTYDDTRAKEIYDDFRNF 66

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  D            + R R +  R L+E    +VV+
Sbjct: 67  T--KQVWLY-------------PAKDLLFYSADIHGNLMTRQRIAVLRHLMEDQGGVVVT 111

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           ++  +   +  ++   +  + ++ G  ++       L    Y+R       G F + G  
Sbjct: 112 TMDGLMDHLLPLQYLKEQAITVESGQVIDLNVWRQRLTAMGYERMAQVDGMGQFSIRGGI 171

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+IFP   E+V  R+ ++ ++++ I  F   + + +  ++ + IY  +  V  +  L   
Sbjct: 172 IDIFPL-TEEVPLRIELWDDEVDSIRTFDLESQRSVEQLDAVTIYPAAEVVLDKKQLEAG 230

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              +++E K     L ++ +  EA R+   I    + L        ++ Y RY       
Sbjct: 231 TDRLRKEAKTYEKALREQHKTEEAHRIHSIIEELADGLREGWKLGGLDAYIRYFCP---- 286

Query: 456 EPPPTLFEYIPE-DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
               +  EY P+ +S++++DE      +   +            E G+ LP   +     
Sbjct: 287 -DTVSFLEYFPKGESVVYLDEPARLREKGETVELEFRESMVHRLEKGYLLPGQTE-LLYP 344

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            EE        + V  T    +L   +      I            + S +   E +  +
Sbjct: 345 VEEVMARVQRPLTVMLTGLDQKLPGMKVNHKFSI--------DVKNVNSYQNSFEILIKD 396

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS---EVKTLE-RIEIIRDLRL 630
           +    ++G R++L   ++  A  L   L E  +R         E++T + R       ++
Sbjct: 397 LTRWKKEGYRVILLSASRTRASRLASDLREYGLRAYCPDGAEPEMETGDGREAKDAHPKV 456

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
              +++V    L  G + P    V I + D  G
Sbjct: 457 KPGEIMVTYGSLHRGFEYPLLKFVYITEGDMFG 489



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 18/192 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +  +    L +PPV+    +T V     E V + IN   
Sbjct: 787 VLTLTATPIPRTLHMSLAGIRDMSV----LEEPPVDRTPIQTYVMEYNEEMVREAINREL 842

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +++   +        V + H +++  E   I+ D   G+ DVLV
Sbjct: 843 ARNGQVYYVYNRVTDIDEVANRIQALVPEAVVTFAHGQMREHELERIMADFINGEIDVLV 902

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DAD+ G L     L   +GR+ R   + ++   D + K  
Sbjct: 903 STTIIETGLDIPNANTMIIHDADRMG-LSQLYQLRGRVGRSNRTSYAFLMYRRDKLLK-- 959

Query: 698 QLAIDETTRRRE 709
               +E  +R +
Sbjct: 960 ----EEAEKRLQ 967



 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 94/287 (32%), Gaps = 51/287 (17%)

Query: 517 EWNCLRP------TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
           E+  L P          + A     E    + I+   I    G     V +R+A   V+D
Sbjct: 628 EFEELFPYDETDDQMDAIDAVKTDME---SRRIMDRLICGDVGYGKTEVALRAAFKAVQD 684

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
               + L          T+L ++      + + +  +RV  +        +   + DLR 
Sbjct: 685 SKQVVYLVP-------TTILAQQHYNTFVQRMKDFPVRVDMLSRFCTPARQKRTLEDLRK 737

Query: 631 GKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN------ 683
           G  D+++G + +L + +   + GL+ I +  + G    +      I +   NV+      
Sbjct: 738 GMVDIVIGTHRVLSKDMQFKDLGLLIIDEEQRFGVAHKE-----KIKQLKENVDVLTLTA 792

Query: 684 ---SKVILYADTITKSIQLAIDETTRRREKQ---LEHNKKHNINPQSVKEKIMEVIDPIL 737
               + +  +    + + +  +    R   Q   +E+N++           + E I+  L
Sbjct: 793 TPIPRTLHMSLAGIRDMSVLEEPPVDRTPIQTYVMEYNEEM----------VREAINREL 842

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKS-----LRKQMHLAADNLN 779
             +     +      +     + +A +          QM      L 
Sbjct: 843 ARNGQVYYVYNRVTDIDEVANRIQALVPEAVVTFAHGQMREH--ELE 887


>gi|168183619|ref|ZP_02618283.1| transcription-repair coupling factor [Clostridium botulinum Bf]
 gi|237797000|ref|YP_002864552.1| transcription-repair coupling factor [Clostridium botulinum Ba4
           str. 657]
 gi|182673263|gb|EDT85224.1| transcription-repair coupling factor [Clostridium botulinum Bf]
 gi|229263299|gb|ACQ54332.1| transcription-repair coupling factor [Clostridium botulinum Ba4
           str. 657]
          Length = 1168

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 88/520 (16%), Positives = 198/520 (38%), Gaps = 51/520 (9%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           + +    S D       LL  I+  +      G++ SGK + ++ +   +    ++   +
Sbjct: 6   LVSPLSLSED----FKSLLNNINLNKFPIGAYGLSDSGKNYFISNIFANVDESLVIFTHS 61

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
            + A ++Y +   +                    Y+P  +       +I+  +   R   
Sbjct: 62  DVEARKIYEDLSLYTTE---------------VYYLPTKEVVFYNIYAISGDLRWERLKV 106

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
              +L     I+V+ +  +      +    +   +L +GD +E K L   L+K  Y+R D
Sbjct: 107 INEILSPKKKIIVTCIESLESAYIPKELYTKYTFKLSVGDIIEIKLLEEKLIKSGYERVD 166

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           I   +G F V G  I+I+P    +  +R+  F ++I+ I  F   + + I     I I+ 
Sbjct: 167 IVENKGEFSVRGGIIDIYPPISSE-PYRLEFFDDEIDSIRNFNVNSQRSIEKANNINIFP 225

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
               +     ++  +K IK +L   +++L    +  + ++++  I  +LE L  + S ++
Sbjct: 226 AKEIILEEENISLGLKNIKTDLDKLVLKL---NKKEDKEKIQSIINSNLEQLNESWSFEN 282

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           I+ +  Y   +       +L +YI E SL+ +D+    + ++   Y           E G
Sbjct: 283 IDTFLPYFYNKT-----NSLLDYI-EGSLIIIDDVKRCLGKLESTYLEFNEDYNKFLEKG 336

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
             LP   +       +   +               +++    +  + +    L      +
Sbjct: 337 CILPKQAEIV----HDKERMIEQLEF-KKIINIENIKKTIDRLKPKSV----LTFNQTTL 387

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           +    ++E + ++I    ++  +IL+   T+   E L  +L +  +   Y          
Sbjct: 388 QGYNGKIEFLIEDIKEKKKEKYKILILSGTRSRGERLVNHLRDMGVESSY---------- 437

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
            +I+R+++ G+  V++       G    +  L  I D D 
Sbjct: 438 KDIVREIKPGE--VVITFGNQGNGFQYYDIKLSVISDKDI 475



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +I        PV+        + + D I     +G 
Sbjct: 775 VLTLSATPIPRTLHMSLVGVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGG 834

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I           ++  Y+ +     R    H ++K  E   ++ D    KFD+L+   +
Sbjct: 835 QIYFVYNRVESIHEMASYISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I DADK G L     L   +GR  R     +    D I       +
Sbjct: 895 IETGMDIKNVNTMIIYDADKMG-LSQLYQLRGRVGRTNRMAYCYLTYKRDKI-------L 946

Query: 702 DETTRRREKQLE 713
            E   +R K ++
Sbjct: 947 TEVAEKRLKAIK 958


>gi|56961865|ref|YP_173587.1| transcription-repair coupling factor [Bacillus clausii KSM-K16]
 gi|56908099|dbj|BAD62626.1| transcription-repair coupling factor [Bacillus clausii KSM-K16]
          Length = 1180

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 92/523 (17%), Positives = 197/523 (37%), Gaps = 47/523 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
             +  + KGI +    QLL G+TGS +T   A +     R  +V+  N   A ++Y +  
Sbjct: 12  KEVRAVAKGIENDMNEQLLTGLTGSARTVVSAALFRETGRSQLVVTHNLYQAQKIYEDLV 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
                + V  +             P  +    + +  + ++   R     +L++    IV
Sbjct: 72  ELLDEDTVYLY-------------PVNELISAEIAVASPEMKAQRLDLLNALVQDFKGIV 118

Query: 275 VSSVSCIYGIGSVESYSQMIV-QLKIGDSV-EQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           V+ ++ I  +   ++  Q     LK G+ + + +E + + V   Y+R D+    G F V 
Sbjct: 119 VAPLAGIRRLLPPKALWQSSQLHLKTGEDIGDLEEFIKNFVTMGYRRSDMVSAPGEFSVR 178

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++++P   E    R+ +F  +++ +  F   T +    ++ + I      +      
Sbjct: 179 GGIVDLYPLTKE-HPLRIELFDTEVDSMRYFSLETQRSEGMIDEVTIGPAQEVLLHHSHY 237

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
           +   K ++E+ +  L ++  +       +L++ I +++  L+ + + + +  Y       
Sbjct: 238 SHGAKLLEEKYEATLKKVASK---QTRDKLQEHIPFEIAQLKQSATFEGMYKYMSLYY-- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E P +L  Y+PED+ ++VDE +        + + +      + E G  +     +  
Sbjct: 293 ---ETPQSLLSYMPEDAFVWVDEMNRVKEMAEHLQKEEAEWHTAMLEQGSIVHG--THLS 347

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           L         P  ++ +    S   +Q      EQII           +++   Q++ + 
Sbjct: 348 LDALARLQQAPQPVLYT----SLFQKQVPSTKPEQIIN-----LSCKSMQNFHGQMDLLT 398

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            E+N        +L    T+  A  L   L +  I    +          E I DL   K
Sbjct: 399 SEVNRWLSNDYTVLFIAGTEDRANRLALNLEDEKIDAHLI----------EAITDLTPSK 448

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
               +    L  G ++ E  LV + + +       +    Q +
Sbjct: 449 VQ--IYTGHLHTGFELSEQKLVVVTEEEVFSKRAKRPKRRQKL 489



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 775 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEFNPAIVREAIERELSRGG 834

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++ +        E +TE +       R  Y H ++   E   II D   G+ DVLV   +
Sbjct: 835 QVYVLYNRVEDIERMTEQISTLVPDARVSYAHGQMNERELESIILDFLEGESDVLVTTTI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +ADK G  +    L Q  GR  R+       +     K +    
Sbjct: 895 IETGVDIPNVNTLIVCNADKMGLSQ----LYQIRGRVGRSNRVAYSYFTYQPDKVLTEVA 950

Query: 702 D 702
           +
Sbjct: 951 E 951


>gi|302390888|ref|YP_003826708.1| transcription-repair coupling factor [Acetohalobium arabaticum DSM
           5501]
 gi|302202965|gb|ADL11643.1| transcription-repair coupling factor [Acetohalobium arabaticum DSM
           5501]
          Length = 1175

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 107/508 (21%), Positives = 206/508 (40%), Gaps = 42/508 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  L K +      QL + ++ S + F  A + E +    +++  N   AA+LY E    
Sbjct: 15  IGNLKKNLTENLNTQLEVNLSVSQRAFIAANIYEQVSDKFLLLTYNWQRAAELYEELLRL 74

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                +  F             P+ +    +   ++  +   R +A   L  R++ I+++
Sbjct: 75  LATEEIFLF-------------PQLEVLPHESIEVDISVKVQRLTALEKLTTRDESIIIA 121

Query: 277 SVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            +  +   +   + ++    ++    +VE K++ S L+ Q Y R D+   +G F + G  
Sbjct: 122 PIQALLMKLPPADIFADYSFRIDFDSTVELKKISSQLINQGYCRVDMVENKGDFSIRGGI 181

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P    +   R+ +FG+++E I EF   T + I+ +  + I   +  +    +L   
Sbjct: 182 IDIYPLTRSN-PVRIELFGDEVESIREFDLATQRSIKELNDVHIPPATEILLDSDSLQQG 240

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +  + +ELK     L ++G+  EA+ LE+++  DLE +E      +I  Y          
Sbjct: 241 IAKLNKELKQNREVLIEDGKNKEAKELERKLETDLEQIEEGIQFPAIRQYLPAFYSGL-- 298

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
               TL +Y  E SL+F   + +    +  M   +  R  +L   G  L S   N    F
Sbjct: 299 ---STLIDYFNEGSLVFDSPNRIQKRAVDLMDDHNGLR-LSLLNQGSVLSSYAKN----F 350

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +  L   T   S       L + Q I   ++ R          +   R Q+    DE+
Sbjct: 351 ASFEELLTETYDYSK----LYLNKTQEIKSLRVDRKLEFNLKETPV--FRGQINHFLDEL 404

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +Q  R+++T+ T+   + L   L E ++   Y           EI   L+ G  ++
Sbjct: 405 KQLIEQQYRVIITLSTESKCKRLINSLQEEDLTAFYT---------EEITDKLQSG--NI 453

Query: 636 LVGINLLREGLDIPECGLVAILDADKEG 663
            V  + L++G  +P+   +   + D  G
Sbjct: 454 AVTTDALQKGFSLPDLKFILFTETDIFG 481



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 70/186 (37%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P+         + + + I     +G 
Sbjct: 780 VLTLTATPIPRTLHMSLVGVRDMSLIETPPQNRYPIRTYVREYSDDLIREAIRKEIDRGG 839

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  + +   + +   +   +  H ++   +  +I+     G+ DVLV   +
Sbjct: 840 QVYFVHNRVKNIDKVAAKIKKLLPKAEVVTAHGQMSEAKLEKIMLGFLDGEHDVLVCTTI 899

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-- 699
           +  GLDIP    + I +AD+ G  +    L   +GR  R   + ++   D +   +    
Sbjct: 900 IETGLDIPNVNTILINNADQLGLAQ-LYQLRGRVGRTNRVAYAYLLYQQDQVLSEVAEKR 958

Query: 700 --AIDE 703
             AI E
Sbjct: 959 LQAIKE 964


>gi|158321662|ref|YP_001514169.1| transcription-repair coupling factor [Alkaliphilus oremlandii
           OhILAs]
 gi|158141861|gb|ABW20173.1| transcription-repair coupling factor [Alkaliphilus oremlandii
           OhILAs]
          Length = 1174

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 110/507 (21%), Positives = 211/507 (41%), Gaps = 47/507 (9%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           Q+ K I SR+    L G+  + K+     + + ++    ++  N++ A Q+Y + K +  
Sbjct: 18  QVRKNIESRKSPIALYGLNDTQKSHIAYGIQDEIKGQVCIVTYNEMEARQIYEDLKFYAG 77

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
             A+              ++P  +       + +      R  A  ++LE +DCIVV+++
Sbjct: 78  DRAI--------------FLPSKEIMFYNMEATSRNAQEERMKAIETILEGSDCIVVTAI 123

Query: 279 SC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
              +  +    +Y++  +  ++GD+V+ ++++ +LV Q Y+R+DI   RG F + GD I+
Sbjct: 124 DTFLRLMPPPSAYTKNQISFQVGDTVDLEKVIENLVMQGYEREDIVEERGQFSIRGDIID 183

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFPS  E +  RV +FG++I+ I  F P T + +  +E +K+YA          +   + 
Sbjct: 184 IFPSSAE-MPVRVELFGDEIDSIRNFQPATQRSLDKIEAVKVYAAKETTIESFDVEAVIL 242

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            + ++ K    +L +  +    + L+  +    E L + G+ + +E    Y+      E 
Sbjct: 243 KLNQDYKNISKKLNQAAK----ENLKNSLEELSEKLRSLGNFRGVEKLLPYIY-----EK 293

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
              L  Y  +++L  +DE      +  G           L E G   P          E 
Sbjct: 294 TTCLLHYFKDNALFILDEPSRLREKSEGYIEEFKESFKILVERGEVFPGQGKLILSYGEV 353

Query: 518 WNCLR-PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            + L+    + +S  P     +  +    ++II           + S   ++E +  EI 
Sbjct: 354 IDRLKEKRIVTLSLLP-----KAIKDFPPKEIINFDTRP-----MASFHGKLELLGKEIQ 403

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               +G +I L   TK     L E+L E+ I   Y+  E          +DL  G+  +L
Sbjct: 404 RLQYKGYKIALIPGTKERCLKLLEFLREKEIPAEYLVGEK---------QDLVTGEVVIL 454

Query: 637 VGINLLREGLDIPECGLVAILDADKEG 663
                LR G +  +     I D +  G
Sbjct: 455 --SGNLRRGFEYVKNKFAVITDYEIYG 479



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 16/190 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +  +    + DPP E    +T V       V D I+   
Sbjct: 776 VLTLTATPIPRTLHMSMIGIRDMSV----IEDPPEERFPVQTYVLGYSESMVVDAISREL 831

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++       +    +   L E     RV   H ++   E  +I+ +   G++D+LV
Sbjct: 832 ARGGQVYYVYNRVQGIHQVANNLKELVPQGRVAVAHGQMSERELEKIMLEYMNGEYDILV 891

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + I DADK G L     L   +GR+ R   + ++   D I   +
Sbjct: 892 STTIIETGMDISNVNTIIIQDADKLG-LSQLYQLRGRVGRSYRQGYAYLMYEKDKILSEV 950

Query: 698 Q----LAIDE 703
                 AI E
Sbjct: 951 AEKRLKAIKE 960


>gi|295401980|ref|ZP_06811942.1| transcription-repair coupling factor [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109202|ref|YP_003987518.1| transcription-repair coupling factor [Geobacillus sp. Y4.1MC1]
 gi|294975982|gb|EFG51598.1| transcription-repair coupling factor [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311214303|gb|ADP72907.1| transcription-repair coupling factor [Geobacillus sp. Y4.1MC1]
          Length = 1177

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 96/556 (17%), Positives = 199/556 (35%), Gaps = 61/556 (10%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ GI +  K QL++G++GS ++  ++ + +   RP +V+  N   A ++Y + 
Sbjct: 11  NQDIRSIIGGIEAGLKEQLIVGLSGSARSVFISSLYKETDRPLLVITHNLFQAQKIYDDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    + +  + ++   R        +R+  +
Sbjct: 71  VQLLGTEEVFLY-------------PVNEVIATELAIASPELKAQRLEVMNYWTKRDKGV 117

Query: 274 VVSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           V+  V+ +  +    S +   I+ L++  +++ +      V+  YKR       G F V 
Sbjct: 118 VICPVAGLRRLLPPVSLWKNNILTLEVQQNIDVEYCKKQFVQMGYKRVATVSAPGEFSVR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  I+I+P   E + +R+ +F  +IE I  F     +    V  I I      +     L
Sbjct: 178 GGIIDIYPLTAE-LPYRIELFDTEIESIRTFTADDQRSRDEVRQITIGPADEMIVYGEML 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              +  I+  L   L +L+ E      Q L + I+ +LE L+     +    Y       
Sbjct: 237 ERGIARIEAGLTESLHKLKDEK---AKQLLLEHISSELEQLKQGQEIEQQYKYMALFY-- 291

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E P +L +Y+PE+ +L +DE          + + +     +L   G  +     + P
Sbjct: 292 ---EEPASLLDYMPENGILLMDEMSRLQEAAESLDKEEAEWYTSLLSEGKII----HDVP 344

Query: 513 LRFEE---WNCLRPTTIVVSATPGSWELEQCQGIIVEQI--IRPTGLVDPPVE-IRSART 566
           +           R   I +S             I +  +   RP  +V+   + +++   
Sbjct: 345 ISHSFSQLLQKHRKQRIYLS-------------IFLRHVPHTRPENIVNISCKQMQNFHG 391

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q+  +  E+    +    ++         + L   L +  I V  ++ E   +       
Sbjct: 392 QMSLLKSELERWKKAKYAVVFLTPNAERMKKLQSVLEDYEIDVAPLNREAVLMH------ 445

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVN 683
               GK+ ++     L  G ++P   L  I + +       +    Q +    R      
Sbjct: 446 ----GKYQMI--EGDLNTGFELPMQKLAVITEEELFKKRVKRPIRRQKLSNAERIKSYSE 499

Query: 684 SKVILYADTITKSIQL 699
            +V  Y   +   I  
Sbjct: 500 LRVGDYVVHVNHGIGK 515



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 11/183 (6%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II        PV+        E V + I     +  
Sbjct: 774 VLTLTATPIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEYTPELVREAIERELAREG 833

Query: 584 RILLTVLTKRM----AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++             AE++++ + E   RV Y+H  +   E    +     G++DVLV  
Sbjct: 834 QVFFLYNHIEDIDVKAEEISQLVPEA--RVTYVHGRMSETELESTMLAFLEGQYDVLVTT 891

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 892 TIIETGVDIPNVNTLIVYDADRMGLSQ----LYQLRGRVGRSNRVAYAYFTYRKDKVLNE 947

Query: 700 AID 702
           A +
Sbjct: 948 AAE 950


>gi|187777479|ref|ZP_02993952.1| hypothetical protein CLOSPO_01047 [Clostridium sporogenes ATCC
           15579]
 gi|187774407|gb|EDU38209.1| hypothetical protein CLOSPO_01047 [Clostridium sporogenes ATCC
           15579]
          Length = 1172

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 97/499 (19%), Positives = 197/499 (39%), Gaps = 67/499 (13%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
            G+  SGK + ++ +   + +  ++   + + A ++Y +   +                 
Sbjct: 37  YGLADSGKNYFISSIFANVDKSLVIFTHSDVEARRIYEDLSLYTTE-------------- 82

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG----SVES 289
              Y+P  +       +I+  +   R      +L     I+V+   CI  +G      E 
Sbjct: 83  -VYYLPTKEVVFYNIYAISGDLRWERLKVINEVLSTKKKIIVT---CIESLGATYIPKEL 138

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           Y +   ++ +GD +E K L   LVK  Y+R DI   +G F V G  I+I+P    +  +R
Sbjct: 139 YIKYTFKMSVGDIIETKSLEEKLVKSGYERVDIVENKGEFSVRGGIIDIYPPISSE-PYR 197

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           +  FG++++ I  F   + + I  V +I I+     +     +N  +K IK +L   +  
Sbjct: 198 LEFFGDEVDSIRNFNVNSQRSIEKVNSISIFPAKEIILEEENINLGLKNIKADLDKLVGN 257

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
           L    +  + ++++  I  +LE L  + S ++I+ +  Y           +L +YI EDS
Sbjct: 258 LS---KKEDKEKIQSIINSNLEQLNESWSFENIDTFLPYFY-----TKTNSLLDYI-EDS 308

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
            + +D+    + ++   Y           E G+ LP   +                IV  
Sbjct: 309 FIVIDDVKRCLGKLDSTYLEFNEDYDKFLEKGYILPKQAE----------------IVYD 352

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-------RSARTQVEDVYDEINLAAQQG 582
                 +LE  + I +E I +    + P   +       +    ++E + ++I    ++ 
Sbjct: 353 KERIIEQLEYKKIITIENIKKTIDKLKPKSVVTFNQTTLQGYNGKIEFLIEDIKEKKKEK 412

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            +IL+   T+   E L  +L +  +   Y           +I+R+++ G+  V++     
Sbjct: 413 YKILILSGTRSRGERLVNHLRDMGVESSY----------KDIVREIKPGE--VVITFGNQ 460

Query: 643 REGLDIPECGLVAILDADK 661
             G    +  L  I D D 
Sbjct: 461 TNGFQYYDIKLSVISDKDI 479



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +I        PV+        + + D I     +G 
Sbjct: 779 VLTLSATPIPRTLHMSLVGVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGG 838

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I           ++  Y+ +     R    H ++K  E   ++ D    KFD+LV   +
Sbjct: 839 QIYFVYNRVESIHEMASYISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILVATTI 898

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I DADK G L     L   +GR  R     +    D I       +
Sbjct: 899 IETGMDIKNVNTMIIYDADKMG-LSQLYQLRGRVGRTNRMAYCYLTYKRDKI-------L 950

Query: 702 DETTRRREKQLE 713
            E   +R K ++
Sbjct: 951 TEVAEKRLKAIK 962



 Score = 38.5 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+ +  Y  + DQ  AI  + + + S +   +LL G  G GKT   +    +A+   +  
Sbjct: 621 FEEEFPYEETPDQVLAIEDIKRDMESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQV 680

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAV 222
             + P  ILA Q Y+ FK  F    V
Sbjct: 681 AFLVPTTILAQQHYNNFKQRFSDFPV 706


>gi|148381479|ref|YP_001256020.1| transcription-repair coupling factor [Clostridium botulinum A str.
           ATCC 3502]
 gi|153934098|ref|YP_001385854.1| transcription-repair coupling factor [Clostridium botulinum A str.
           ATCC 19397]
 gi|153937373|ref|YP_001389261.1| transcription-repair coupling factor [Clostridium botulinum A str.
           Hall]
 gi|148290963|emb|CAL85099.1| transcription-repair coupling factor [Clostridium botulinum A str.
           ATCC 3502]
 gi|152930142|gb|ABS35642.1| transcription-repair coupling factor [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933287|gb|ABS38786.1| transcription-repair coupling factor [Clostridium botulinum A str.
           Hall]
          Length = 1168

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 88/520 (16%), Positives = 198/520 (38%), Gaps = 51/520 (9%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           + +    S D       LL  I+  +      G++ SGK + ++ +   +    ++   +
Sbjct: 6   LVSPLSLSED----FKSLLNNINLNKFPIGAYGLSDSGKNYFISNIFANVDESLVIFTHS 61

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
            + A ++Y +   +                    Y+P  +       +I+  +   R   
Sbjct: 62  DVEARKIYEDLSLYTTE---------------VYYLPTKEVVFYNIYAISGDLRWERLKV 106

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
              +L     I+V+ +  +      +    +   +L +GD +E K L   L+K  Y+R D
Sbjct: 107 INEILSPKKKIIVTCIESLESAYIPKELYTKYTFKLSVGDIIEIKLLEEKLIKSGYERVD 166

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           I   +G F   G  I+I+P    +  +R+  F ++I+ I  F   + + I  V  I I+ 
Sbjct: 167 IVENKGEFSARGGIIDIYPPISSE-PYRLEFFDDEIDSIRNFNVNSQRSIEKVNNINIFP 225

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
               +     ++  +K IK +L   +++L    +  + ++++  I  +LE L  + S ++
Sbjct: 226 AKEIILEEENISLGLKNIKTDLDKLVLKL---NKKEDKEKIQSIINSNLEQLNESWSFEN 282

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           I+ +  Y   +       +L +YI E SL+ +D+    + ++   Y           E G
Sbjct: 283 IDTFLPYFYNKT-----NSLLDYI-EGSLIIIDDVKRCLGKLDSTYLEFNEDYDKFLEKG 336

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
             LP   +       +   +               +++    +  + +    L      +
Sbjct: 337 CILPKQAEIV----HDKERMIEQLEF-KKIINIENIKKTIDRLKPKSV----LTFNQTTL 387

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           +    ++E + ++I    ++  +IL+   T+   E L  +L +  +   Y          
Sbjct: 388 QGYNGKIEFLIEDIKEKKKEKYKILILSGTRSRGERLVNHLRDMGVESSY---------- 437

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
            +I+R+++ G+  V++       G    +  L  I D D 
Sbjct: 438 KDIVREIKPGE--VVITFGNQGNGFQYYDIKLSVISDKDI 475



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +I        PV+        + + D I     +G 
Sbjct: 775 VLTLSATPIPRTLHMSLVGVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGG 834

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I           ++  Y+ +     R    H ++K  E   ++ D    KFD+L+   +
Sbjct: 835 QIYFVYNRVESIHEMASYISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I DADK G L     L   +GR  R     +    D I       +
Sbjct: 895 IETGMDIKNVNTMIIYDADKMG-LSQLYQLRGRVGRTNRMAYCYLTYKRDKI-------L 946

Query: 702 DETTRRREKQLE 713
            E   +R K ++
Sbjct: 947 TEVAEKRLKAIK 958


>gi|261417548|ref|YP_003251230.1| transcription-repair coupling factor [Geobacillus sp. Y412MC61]
 gi|319765205|ref|YP_004130706.1| transcription-repair coupling factor [Geobacillus sp. Y412MC52]
 gi|261374005|gb|ACX76748.1| transcription-repair coupling factor [Geobacillus sp. Y412MC61]
 gi|317110071|gb|ADU92563.1| transcription-repair coupling factor [Geobacillus sp. Y412MC52]
          Length = 1177

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 93/553 (16%), Positives = 189/553 (34%), Gaps = 55/553 (9%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              +  +++G+H R K QL+ G++GS ++  ++ + +   RP +V++ N   A ++Y + 
Sbjct: 11  NQDVRTIIEGLHVRLKEQLVAGLSGSARSVFISTLYKETGRPLLVVSHNLFQAQKMYDDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            +      V  +                +    + +  + ++   R        +    +
Sbjct: 71  VSLLGPEDVFLYS-------------VNEVIAAEMAVASPELKAQRLEIMNHWAQGGKGV 117

Query: 274 VVSSVSCIYGI-GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           VV  V+ +  +      + Q +    +G   + +      V+  YKR       G F V 
Sbjct: 118 VVCPVAGLRRLLPPPSLWKQYLFTFFVGQEFDVERCKQKFVQMGYKRVGTVSAPGEFSVR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  I+I+P   E + +R+ +F  +IE I  F P   +    +E I I      +    T 
Sbjct: 178 GGIIDIYPLTAE-LPYRIELFDTEIESIRTFTPDDQRSQGQIERIMIGPADEIILDGETR 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++ I+  L   L  ++ E      QR+ + I  +LE L      +    Y       
Sbjct: 237 RRGIERIEAGLASSLETMKDEA---AKQRMYEHIHAELEQLREGQEIEQQYKYMSLFY-- 291

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   +L +Y+PED +L +DE          + R +     +L + G      +   P
Sbjct: 292 ---EKVASLLDYLPEDGVLLMDEMSRLQEAAERLDREEAEWYTSLLDGG----KMIHGVP 344

Query: 513 LRF---EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           L     E     R   + +S       L        + ++  T        +++   Q+ 
Sbjct: 345 LSHSFSELLQKHRFQRVYLS-----LFLRHVPYAHPQNVVNITCKQ-----MQNFHGQMA 394

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +  E+    +    ++         + L   L +  I    +  +   L          
Sbjct: 395 LLQSEVERWEKANYAVVFLAPNAERVKKLQSLLQDYEIDALPLARDAALLH--------- 445

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKV 686
            GK  +L     L  G ++P   +  I + +       +    Q +    R       +V
Sbjct: 446 -GKCQLL--EGDLNTGFELPLQKIAVITEEELFKKRVKRPVRRQKLSNAERIKSYAELQV 502

Query: 687 ILYADTITKSIQL 699
             Y   +   I  
Sbjct: 503 GDYVVHVNHGIGK 515



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 69/183 (37%), Gaps = 11/183 (6%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II        PV+        E V + I     +  
Sbjct: 774 VLTLTATPIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEYTPELVKEAIERELARDG 833

Query: 584 RILLTVLTKRM----AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++             AE++ + + E   RV Y+H  +   E    I     G++DVLV  
Sbjct: 834 QVFFLYNHIEDIDLKAEEIAQLVPEA--RVTYVHGRMSETELESTILAFLEGQYDVLVTT 891

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 892 TIIETGIDIPNVNTLIVYDADRMGLSQ----LYQLRGRVGRSNRVAYAYFTYRKDKVLNE 947

Query: 700 AID 702
           A +
Sbjct: 948 AAE 950


>gi|153940210|ref|YP_001392893.1| transcription-repair coupling factor [Clostridium botulinum F str.
           Langeland]
 gi|152936106|gb|ABS41604.1| transcription-repair coupling factor [Clostridium botulinum F str.
           Langeland]
 gi|295320870|gb|ADG01248.1| transcription-repair coupling factor [Clostridium botulinum F str.
           230613]
          Length = 1168

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 88/520 (16%), Positives = 197/520 (37%), Gaps = 51/520 (9%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           + +    S D       LL  I+         G++ SGK + ++ +   +    ++   +
Sbjct: 6   LVSPLSLSKD----FKSLLNNINLNRFPIGAYGLSDSGKNYFISNIFANVDESLVIFTHS 61

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
            + A ++Y +   +                    Y+P  +       +I+  +   R   
Sbjct: 62  DVEARKIYEDLSLYTTE---------------VYYLPTKEVVFYNIYAISGDLRWERLKV 106

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
              +L     I+V+ +  +      +    +   +L +GD +E K L   L+K  Y+R D
Sbjct: 107 INEILSPKKKIIVTCIESLESAYIPKELYTKYTFKLSVGDIIEIKLLEEKLIKSGYERVD 166

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           I   +G F V G  I+I+P    +  +R+  F ++I+ I  F   + + I  V  I I+ 
Sbjct: 167 IVENKGEFSVRGGIIDIYPPISSE-PYRLEFFDDEIDSIRNFNVNSQRSIEKVNNINIFP 225

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
               +     ++  +K IK +L   ++ L    +  + ++++  I  +LE L  + S ++
Sbjct: 226 AKEIILEEENISLGLKNIKTDLDKLVLRL---NKKEDKEKIQSIINSNLEQLNESWSFEN 282

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           I+ +  Y   +       +L +YI E SL+ +D+    + ++   Y           + G
Sbjct: 283 IDTFLPYFYNKT-----NSLLDYI-EGSLIIIDDVKRCLGKLDSTYLEFNEDYDKFLQKG 336

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
             LP   +       +   +               +++    +  + +    L      +
Sbjct: 337 CILPKQAEIV----HDKERIIEQLEF-KKIINIENIKKTIDRLKPKSV----LTFNQTTL 387

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           +    ++E + ++I    ++  +IL+   T+   E L  +L +  +   Y          
Sbjct: 388 QGYNGKIEFLIEDIKEKKKEKYKILILSGTRSRGERLVNHLRDMGVESSY---------- 437

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
            +I+R+++ G+  V++       G    +  L  I D D 
Sbjct: 438 KDIVREIKPGE--VVITFGNQGNGFQYYDIKLSVISDKDI 475



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +I        PV+        + + D I     +G 
Sbjct: 775 VLTLSATPIPRTLHMSLVGVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGG 834

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I           ++  Y+ +     R    H ++K  E   ++ D    KFD+L+   +
Sbjct: 835 QIYFVYNRVESIHEMASYISKLVPEGRVQIAHGQMKEKELEHVVLDFTENKFDILIATTI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I DADK G L     L   +GR  R     +    D I       +
Sbjct: 895 IETGMDIKNVNTMIIYDADKMG-LSQLYQLRGRVGRTNRMAYCYLTYKRDKI-------L 946

Query: 702 DETTRRREKQLE 713
            E   +R K ++
Sbjct: 947 TEVAEKRLKAIK 958


>gi|153865626|ref|ZP_01997878.1| Excinuclease ABC, B subunit [Beggiatoa sp. SS]
 gi|152145173|gb|EDN72121.1| Excinuclease ABC, B subunit [Beggiatoa sp. SS]
          Length = 214

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 106/200 (53%), Positives = 142/200 (71%)

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           +YSE   FFPHNAVEYFVSYYDYYQPEAY+P +DTYIEK++SINE ID+MR SAT+++LE
Sbjct: 1   MYSERGGFFPHNAVEYFVSYYDYYQPEAYMPASDTYIEKDASINEHIDQMRLSATKAMLE 60

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           R D I+V+SVS IYG+G  E Y QM++    G+ +E + +L  L + QY R D  ++RGT
Sbjct: 61  RADAIIVASVSAIYGLGDPEWYKQMVLHFVCGEEMEHRFILRRLAELQYTRNDTVLVRGT 120

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           +RV G+ I+I+P+  E  A RV +F ++IE +S F PLTGQ +R    + +Y  +HYVTP
Sbjct: 121 YRVRGEVIDIYPAESERDAIRVELFDDEIESLSYFDPLTGQILRRARRLTLYPKNHYVTP 180

Query: 389 RPTLNTAMKYIKEELKMRLI 408
           R  L  A+  IK+E   RL 
Sbjct: 181 REVLLQAIDKIKKERLDRLK 200


>gi|291561352|emb|CBL40151.1| transcription-repair coupling factor [butyrate-producing bacterium
           SS3/4]
          Length = 1201

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 90/530 (16%), Positives = 197/530 (37%), Gaps = 74/530 (13%)

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
           + +   +    + GVT S K   M ++ +      +V+  +   A +++ +F ++F  N 
Sbjct: 20  QDLDQGKGPVQISGVTDSQKVHVMHELSKDNPWR-LVVTYDDTRAKEIFDDF-SYFEPNT 77

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
             Y              P  D            + R R    + LLE    +VV++V  +
Sbjct: 78  WLY--------------PARDLLFYSSDIHGNLLTRQRMQVFKHLLEDEGGVVVTTVDGL 123

Query: 282 Y-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
              +  +    +  + + +G +++ +E+   L    Y+R       G F V G  +++FP
Sbjct: 124 MDHLLPLSRIKESCLNIMVGQTLDMEEIKHLLTGMGYERMGQVDGMGQFSVRGGILDVFP 183

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
              E+V  R+ ++G++++ I  F   + + I+ ++ + IY  +  +  +  +   +  ++
Sbjct: 184 L-TEEVPVRIELWGDEVDSIRSFDAESQRSIQQMDEVTIYPAAELILTKEHIEEGILRLE 242

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
            + K +      + +  EAQR+ + +   +E L+     Q+++ Y RY           +
Sbjct: 243 ADEKKQEKAFRDQKKPEEAQRIRRAVGELVESLKEGFDVQTLDAYIRYFCK-----DTVS 297

Query: 461 LFEYIPE-----------------------DSLLFVDESHVTIPQISGMYRGDFHRKATL 497
             +Y+ E                          L +DE      +   +        +  
Sbjct: 298 FLDYMKEVGAKVTLVSSGAAGKASEKKQAAGLALILDEPQRMKEKAETVETEFRESMSHR 357

Query: 498 AEYGFRLPSCMDNRPLRFEEW----NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
            E G+ LP   D   L F       +C  P +I ++        ++  G+  +     TG
Sbjct: 358 LEQGYILPGQAD---LLFASKTVLADCHTPHSIFMTGLD-----QRLPGMTPKAKYSLTG 409

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
                  + S +   E +  ++    + G R++L   ++  A  L   L E         
Sbjct: 410 KN-----LNSYQNSFEILIKDLTKWKKDGYRVVLLSASRTRASRLAGDLREY-------- 456

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            +++     +  R +  G+  ++V    L +G + P    V I + D  G
Sbjct: 457 -DLRAFCPEDAGRPVAPGE--IMVTYGKLHKGFEYPLIKFVVITEGDMFG 503



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 75/182 (41%), Gaps = 15/182 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +  +    L +PPV+    +T V     E + + I+   
Sbjct: 801 VLTLTATPIPRTLHMSLIGIRDMSV----LEEPPVDRVPIQTYVMEYNDEMIREAIHREL 856

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++          +++  ++     +  V + H ++   +  +I+ D   G+ DVLV
Sbjct: 857 GRGGQVYYVYNRVNNIDEVANHVASLVPDANVAFAHGQMNEHQLEKIMLDFINGEIDVLV 916

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DAD+ G  +    L Q  GR  R+  +          K +
Sbjct: 917 STTIIETGLDIPNANTMIIQDADRLGLSQ----LYQIRGRIGRSNRTSFAFLMYKRDKML 972

Query: 698 QL 699
           + 
Sbjct: 973 KE 974


>gi|160895086|ref|ZP_02075860.1| hypothetical protein CLOL250_02637 [Clostridium sp. L2-50]
 gi|156863517|gb|EDO56948.1| hypothetical protein CLOL250_02637 [Clostridium sp. L2-50]
          Length = 1174

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 101/508 (19%), Positives = 192/508 (37%), Gaps = 48/508 (9%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           Q+   +  ++ +  + G  G+ + + M     +     +V+  ++    QLY +F+  F 
Sbjct: 16  QIKDWLKEQDGIVNISGNDGTDRVYLMHA-FSSDAHVRLVVTYSEQRMEQLYEDFR--FY 72

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
             AV  +             P  D            I R R    R L+E   C ++ +V
Sbjct: 73  DKAVYMY-------------PSKDILFYSSDIHGNSITRRRMDIFRRLIEGEACTIILTV 119

Query: 279 SCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             ++  +  +    + +V ++  + ++ + L   LV+  Y++ D     G F V G  I+
Sbjct: 120 DALFDRMPDLSYIKKNVVTIREAEELDVEALKKCLVELGYEKADSVDGVGQFAVRGGIID 179

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP   E+  +R+ M+  +++ I  F   + + I  V+ I+IY  S  V         ++
Sbjct: 180 IFPL-TEECPYRIDMWDTEVDTIRSFDVESQRSIEQVQEIQIYPASEMVLSDRRTAQGIR 238

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            +++E K    +L KE +  EA RL+++I    E L        +++Y  Y         
Sbjct: 239 KLEQEFKPYYEKLRKEFKTEEAARLKKQIGEIKEQLTEFHGMAGVDSYVEYFY-----SK 293

Query: 458 PPTLFEYI-PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
             +L +    +++++ +DE+                   +  E G+ LP  M        
Sbjct: 294 TVSLLDCFRTKNTVILLDETSRISDYADNYMATFLESMESRLEGGYILPGMM-------- 345

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQI--IRPTGLVDPPVEIRSARTQVEDVYDE 574
             N L     +V        L        ++   IR     D  V + S R   E +  +
Sbjct: 346 --NILFTYPAIVQKMQAFQTLAFSILYHEDRYFTIRHDVTYDSRV-VNSYRNNFEALIAD 402

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I    ++  RI+    +   A+ + E L   ++   Y               D  L + +
Sbjct: 403 IGKWREKNYRIIFISPSTTRAKRMVENLTSHDVACFY-----------SEDTDRVLSEKE 451

Query: 635 VLVGINLLREGLDIPECGLVAILDADKE 662
           V+V    LR G + PE  LV I + D  
Sbjct: 452 VMVTTGRLRAGFEFPELKLVVINEGDVF 479



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 19/195 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +  +    L + PV+ R+ +T V     E V + I    
Sbjct: 780 VLTLTATPIPRTLHMSLIGIRDMSV----LEEAPVDRRAIQTYVMELDPELVKEAIKREL 835

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E +T  +     +  V Y H ++   +  +I+      + DVLV
Sbjct: 836 ARDGQVYYVYNRVNNIEMVTSEIASLVPDAVVEYAHGQMHERQLEDIMYRFINHEIDVLV 895

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DAD  G L     L   +GR+ RN  + ++   D +    
Sbjct: 896 TTTIIETGLDIPNANTMIIHDADTFG-LSQLYQLRGRVGRSDRNAYAFLMYRRDKL---- 950

Query: 698 QLAIDETTRRREKQL 712
              I ET  +R K +
Sbjct: 951 ---IKETAEKRLKAI 962



 Score = 39.3 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 8/163 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  AIA+    +  S+   +L+ G  G GKT   +    +A+   R  
Sbjct: 622 FEEMFPYEETDDQKKAIAETKADMESSKIMDRLICGDVGFGKTEVAIRAAFKAVYDGRQV 681

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
             + P  ILA Q Y+ FK       VE  +        E      D    K   +   I 
Sbjct: 682 AYLVPTTILAQQHYNTFKERMKEFPVEIRLLCRFCTPKEVRETIADLKAGKVDIV---IG 738

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
             R   ++ +  +   +++      +G+   E   QM   + +
Sbjct: 739 THRLL-SKDVAFKQLGLLIIDEEQRFGVTHKEKIKQMKTNVDV 780


>gi|228919004|ref|ZP_04082384.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228840653|gb|EEM85914.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 1176

 Score =  243 bits (620), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 104/630 (16%), Positives = 232/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +++++E L   + +L  +       ++ + +++++EML+   S + +  Y       
Sbjct: 237 KSGIQHLEEGLTKTMQKLSDDKL---KTKVLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     + P
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHP 348

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FE +   +  +  V  T     +       +  +   T        ++    Q+  + 
Sbjct: 349 --FEGFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMNLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQITV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963


>gi|288554664|ref|YP_003426599.1| transcription-repair coupling factor [Bacillus pseudofirmus OF4]
 gi|288545824|gb|ADC49707.1| transcription-repair coupling factor (TRCF) [Bacillus pseudofirmus
           OF4]
          Length = 1180

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 93/523 (17%), Positives = 197/523 (37%), Gaps = 56/523 (10%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +  +   + +  K QLL G+TGS +T  MA + +  ++  +V+  N   A ++Y +  + 
Sbjct: 14  VKAVSSSVEAGMKEQLLSGLTGSSRTLLMAALYKETKKTQVVITHNLFQAQKVYEDLIDL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    + +  + ++   R      L+   + I++ 
Sbjct: 74  VGEEDVHLY-------------PVNELISSEIAIASPEMKSQRLDVLNKLVAGFEGIIIV 120

Query: 277 SVSCIYGIGSVES-YSQMIVQLKIGDSV-EQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
            ++ I  +      +    + + +G  + E   +++ LV   ++R D+    G F V G 
Sbjct: 121 PLAGIRRLLPPTYLWKDSQLNISVGRDIGEIHNVITKLVMMGFERVDMVSSPGEFSVRGG 180

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I+I+P   E    RV +F  +I+ I  F   T +  + ++ I I      +        
Sbjct: 181 IIDIYP-LTESNPIRVELFDTEIDSIRTFLIETQRSEKELKEITIGPAEEVILQDQHYQH 239

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A   ++E+L   L +++ +      ++L Q I+Y++  L+   S Q +  Y  +      
Sbjct: 240 AANRLQEQLSATLKKVKAK---QTKEKLSQNISYEIGQLKQRSSFQGMYKYMSFYY---- 292

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
            E   TL  Y+P+D+L+ +DE          + + +      L   G      +    + 
Sbjct: 293 -EVKSTLLSYLPDDALIIIDEMSRVKEMADNLEKEEAEWSTALLAQG----ETVHEATMS 347

Query: 515 FEEWNCLR---PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            +    ++    + + +S       L+       E ++  T        +++   Q++ +
Sbjct: 348 LDALEGMKKSSHSIVYLS-----LFLKHIPSTSPENVVNFTCK-----SMQNFHGQMQLL 397

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             E+    + G  I+    TK  A+ L   L E  I    +          E   +L   
Sbjct: 398 QSEVKRWQKSGYAIVFLAGTKERAQRLALNLDEEGIDAHVV----------ERATELTEN 447

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
              ++V    L  G ++P   LV I +   E     +   +Q 
Sbjct: 448 TVHLMV--GQLNSGFELPSHKLVVITE---EEVYAKQKKRVQR 485



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 67/181 (37%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 776 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNASLIREAIERELTRGG 835

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E +TE +     + +V + H ++   E   I+ D   G  DVLV   +
Sbjct: 836 QVYFLYNRVEDIERMTEQISMLVPDAKVSFAHGQMNERELESIMLDFLEGNSDVLVTTTI 895

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I DADK G  +    L Q  GR  R+       +     K +    
Sbjct: 896 IETGVDIPNVNTLIINDADKMGLSQ----LYQIRGRVGRSNRVAYAYFTYQRDKVLTEVA 951

Query: 702 D 702
           +
Sbjct: 952 E 952


>gi|118475824|ref|YP_892975.1| transcription-repair coupling factor [Bacillus thuringiensis str.
           Al Hakam]
 gi|118415049|gb|ABK83468.1| transcription-repair coupling factor [Bacillus thuringiensis str.
           Al Hakam]
          Length = 1207

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 103/630 (16%), Positives = 230/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 42  NEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 101

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L      I
Sbjct: 102 VALLGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGI 148

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  +++ +G  ++    L +L    Y+R+ +    G F + 
Sbjct: 149 IVAPVAGLRRFLPMKELWKQRQIEISLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLR 208

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 209 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEEL 267

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +K+++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 268 KSGIKHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYN- 323

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     +  
Sbjct: 324 ----EPASLIDYLPEDGVVILDEISRIQETASHLESEEAEWYISLLGEGTIIQDL--SFS 377

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FEE+   +  +  V  T     +       +  +   T        ++    Q++ + 
Sbjct: 378 HSFEEFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMQLLK 428

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 429 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIDA-----DI-----VEGTDILLPGR 478

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 479 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 536

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 537 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 592

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 593 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 622



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 805 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 864

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 865 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 924

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 925 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 976

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 977 SEVAEKRLQAIKEFTELG 994



 Score = 38.2 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++ K +       +LL G  G GKT   +    +A+  ++  
Sbjct: 647 FESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQV 706

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
            ++ P  ILA Q Y   +  F  
Sbjct: 707 AILVPTTILAQQHYETIRERFQD 729


>gi|258513568|ref|YP_003189790.1| transcription-repair coupling factor [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777273|gb|ACV61167.1| transcription-repair coupling factor [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 1197

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 103/539 (19%), Positives = 209/539 (38%), Gaps = 42/539 (7%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207
            P  + P  I  L  G+    + Q++ G++ + K+F +A +++AM++ A+++  +   AA
Sbjct: 14  QPLINTPEFID-LQNGLAKNRRCQVVSGLSSAQKSFVIAGLVQAMRQTALIITASDQEAA 72

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
            L  + KN  P   V  F             P       +  + +++I R R     SL 
Sbjct: 73  GLTEDLKNLLPDLKVMTF-------------PARRLLPYQVFAYSKEILRQRMEVLESLC 119

Query: 268 ERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
              + ++++ V  +   +G    +    ++L +G   E  +++S L +  Y+R ++    
Sbjct: 120 RGENPVIIAPVEALMRRLGPCADFCSARLELNVGQRYELPQMVSCLHEHGYERVNLVESH 179

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           G F V G  ++I+P    +   RV  F ++++ I  F P T +   N+  ++I+     V
Sbjct: 180 GQFSVRGGILDIYPITGIN-PVRVEFFDDEVDSIRIFNPGTQRSEENMSQMQIFPVREMV 238

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
             +     A + + +E + R   L+K+        L  R    L+ +       SIE Y 
Sbjct: 239 VRQGDWERAYQALSQEYQYRRRNLDKKSDSEVLDNLS-RCEEVLDNISQAKYFDSIEQYL 297

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS 506
            Y    +      TL  YI  +SL+ VDE          + R      + L + G  LP 
Sbjct: 298 PYFYDEDI-----TLLNYIKAESLVLVDEPSRLQENTDLLQRERTETYSELMKAGRVLPG 352

Query: 507 CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSAR 565
                   + +W  +        A      +          + R    V+ PV+ +++  
Sbjct: 353 QFKG----YTDWAGIHKQITGFRA------IYFSFLPRQASLWRSCNTVNFPVKTMQNFM 402

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            +VE + +EI         ++L V     A  L   L + ++   Y+  ++     + + 
Sbjct: 403 GKVEMLAEEIRHYKMSRYGVVLLVKNSDRAAQLVLSLRDYDLEALYLKKDLSEYPHLNVQ 462

Query: 626 RDL---------RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            D+           G+  +++    L  G ++    L  I + +  G  +  +   Q +
Sbjct: 463 EDMPDSKTKYKVDRGRGQIVILPMHLSNGFELVSGKLAVITETEIYGHRKKPSVQRQRV 521



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 66/183 (36%), Gaps = 14/183 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVED-----VYDEINLA 578
            + ++ATP    L           +R T L++ P E R   +T V +     V + I   
Sbjct: 805 VLTLTATPIPRTLHMSIVG-----VRDTSLLETPPEDRIPVQTYVLEEEPVIVREAIRRE 859

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVL 636
             +G ++          + +  +L            H ++K      ++ D    KFD+L
Sbjct: 860 LGRGGQVYYVHNRVADLDRVAGWLKGLVPDAAIAIGHGQMKEDRLENVMLDFMNKKFDIL 919

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +   ++  GLDI     + + DAD  G  +    L   +GR  R   +      D +   
Sbjct: 920 LCTTIIETGLDIQNVNTLIVKDADYMGLAQ-LYQLRGRVGRTNRLAYAYCTFRGDKVMSE 978

Query: 697 IQL 699
           +  
Sbjct: 979 LAE 981



 Score = 37.8 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  AI ++   +   R   +LL G  G GKT   +    +A+   +  
Sbjct: 647 FEAAFPYEETPDQLKAIEEVKADMERPRPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQV 706

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAV 222
            V+ P  ILA Q ++ FK  F    V
Sbjct: 707 AVLVPTTILAQQHFNTFKERFAKYPV 732


>gi|239825634|ref|YP_002948258.1| transcription-repair coupling factor [Geobacillus sp. WCH70]
 gi|239805927|gb|ACS22992.1| transcription-repair coupling factor [Geobacillus sp. WCH70]
          Length = 1177

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 88/526 (16%), Positives = 190/526 (36%), Gaps = 52/526 (9%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              +  +++G+ +R K QL++G++GS ++  ++ +    +RP +V+A N   A ++Y + 
Sbjct: 11  NQDVRSIIEGVKARLKEQLVVGLSGSARSVFISSLYRETERPLLVIAHNLFQAQKIYDDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    + +  + ++   R       L+ N  +
Sbjct: 71  VQLLGAEEVFLY-------------PVNEVIAAEMAIASPELKAQRLEVMNYWLKHNKGV 117

Query: 274 VVSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           V+  V+ +  +    S +   ++ L++   ++ +      V+  YKR       G F V 
Sbjct: 118 VICPVAGLRRLLPPVSLWRDHMLTLEVHHHIDVEHYKQRFVQMGYKRVATVSTPGEFSVR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  I+I+P   E   +R+ +F  +IE I  F     +    V+ + I      +     L
Sbjct: 178 GGIIDIYPLTAE-FPYRIELFDTEIESIRTFTADDQRSRDEVQQVTIGPADEMIVYGEML 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++ I+  L   L +L+ E      Q L + ++ +LE L+     +    Y+      
Sbjct: 237 ERGIERIEAGLAESLNKLKDEK---AKQLLLEHVSSELEQLKQGQEIEQQYKYTALFYN- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PE+ +L +DE          + + +     +L   G  +     + P
Sbjct: 293 ----EPASLLDYMPENGILLMDEMSRLQEMAESLDKEEAEWYTSLLSEGKII----HDVP 344

Query: 513 LRF---EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           +     E         I +S       L        E I+  +        +++   Q+ 
Sbjct: 345 ISHSFSELLQKHPKQRIYLSIF-----LRHVPHTHPENIVNISCKQ-----MQNFHGQMS 394

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +  E+    +    ++         + L     +  I V  +  E   +          
Sbjct: 395 LLKSELERWKKANYAVVFLAPNAERMKKLQSVFEDYEIDVAPLSDEAMLMH--------- 445

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            GK+ +L     L  G ++P   L  I + +       +    Q +
Sbjct: 446 -GKYQML--EGDLNTGFELPMQKLAVITEEELFKKRAKRPIRRQKL 488



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 62/178 (34%), Gaps = 7/178 (3%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II        PV+        E + + I     +  
Sbjct: 774 VLTLTATPIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEYTPELIREAIERELARDG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +   E + +     R  Y H  +   E    +     G++DVLV   +
Sbjct: 834 QVFFLYNRIEDIDAKAEEISQLVPEARVTYAHGRMTENELESTMLAFLEGQYDVLVTTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 894 IETGVDIPNVNTLIVYDADRMGLSQ----LYQLRGRVGRSNRVAYAYFTYRKDKVLNE 947


>gi|254724194|ref|ZP_05185979.1| transcription-repair coupling factor [Bacillus anthracis str.
           A1055]
          Length = 1176

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 104/630 (16%), Positives = 231/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++F MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLVSGMATSSRSFLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L      I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  +++ +G  ++    L +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPMKELWKQRQIEISLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +K+++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIKHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYN- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     +  
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLESEEAEWYISLLGEGTIIQDL--SFS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FEE+   +  +  V  T     +       +  +   T        ++    Q++ + 
Sbjct: 347 HSFEEFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMQLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIDA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963



 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++ K +       +LL G  G GKT   +    +A+  ++  
Sbjct: 616 FESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQV 675

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
            ++ P  ILA Q Y   +  F  
Sbjct: 676 AILVPTTILAQQHYETIRERFQD 698


>gi|30260244|ref|NP_842621.1| transcription-repair coupling factor [Bacillus anthracis str. Ames]
 gi|47525306|ref|YP_016655.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183087|ref|YP_026339.1| transcription-repair coupling factor [Bacillus anthracis str.
           Sterne]
 gi|65317513|ref|ZP_00390472.1| COG1197: Transcription-repair coupling factor (superfamily II
           helicase) [Bacillus anthracis str. A2012]
 gi|165872560|ref|ZP_02217192.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0488]
 gi|167635067|ref|ZP_02393384.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0442]
 gi|167641515|ref|ZP_02399763.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0193]
 gi|170688877|ref|ZP_02880079.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0465]
 gi|170707542|ref|ZP_02897995.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0389]
 gi|177655328|ref|ZP_02936857.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0174]
 gi|190568951|ref|ZP_03021852.1| transcription-repair coupling factor [Bacillus anthracis
           Tsiankovskii-I]
 gi|227812727|ref|YP_002812736.1| transcription-repair coupling factor [Bacillus anthracis str. CDC
           684]
 gi|229603766|ref|YP_002864705.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0248]
 gi|254682320|ref|ZP_05146181.1| transcription-repair coupling factor [Bacillus anthracis str.
           CNEVA-9066]
 gi|254735455|ref|ZP_05193163.1| transcription-repair coupling factor [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744643|ref|ZP_05202322.1| transcription-repair coupling factor [Bacillus anthracis str.
           Kruger B]
 gi|254756348|ref|ZP_05208377.1| transcription-repair coupling factor [Bacillus anthracis str.
           Vollum]
 gi|254762404|ref|ZP_05214246.1| transcription-repair coupling factor [Bacillus anthracis str.
           Australia 94]
 gi|30253565|gb|AAP24107.1| transcription-repair coupling factor [Bacillus anthracis str. Ames]
 gi|47500454|gb|AAT29130.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177014|gb|AAT52390.1| transcription-repair coupling factor [Bacillus anthracis str.
           Sterne]
 gi|164711688|gb|EDR17233.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0488]
 gi|167510500|gb|EDR85898.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0193]
 gi|167529541|gb|EDR92291.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0442]
 gi|170127538|gb|EDS96412.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0389]
 gi|170667101|gb|EDT17862.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0465]
 gi|172080169|gb|EDT65262.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0174]
 gi|190559875|gb|EDV13859.1| transcription-repair coupling factor [Bacillus anthracis
           Tsiankovskii-I]
 gi|227004902|gb|ACP14645.1| transcription-repair coupling factor [Bacillus anthracis str. CDC
           684]
 gi|229268174|gb|ACQ49811.1| transcription-repair coupling factor [Bacillus anthracis str.
           A0248]
          Length = 1176

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 104/630 (16%), Positives = 231/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++F MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLVSGMATSSRSFLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L      I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  +++ +G  ++    L +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPMKELWKQRQIEISLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +K+++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIKHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYN- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     +  
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLESEEAEWYISLLGEGTIIQDL--SFS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FEE+   +  +  V  T     +       +  +   T        ++    Q++ + 
Sbjct: 347 HSFEEFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMQLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIDA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963



 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++ K +       +LL G  G GKT   +    +A+  ++  
Sbjct: 616 FESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQV 675

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
            ++ P  ILA Q Y   +  F  
Sbjct: 676 AILVPTTILAQQHYETIRERFQD 698


>gi|154684574|ref|YP_001419735.1| hypothetical protein RBAM_000640 [Bacillus amyloliquefaciens FZB42]
 gi|154350425|gb|ABS72504.1| Mfd [Bacillus amyloliquefaciens FZB42]
          Length = 1177

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 95/520 (18%), Positives = 188/520 (36%), Gaps = 46/520 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              ++ G+H   K QLL G++GS ++   + + +  +RP   +  N   A ++  +    
Sbjct: 14  FKSIVNGLHEGLKEQLLAGLSGSARSVFTSALAQETKRPIFFITHNLYQAQKVTEDLTAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
               +V  +             P  +    + +  + ++   R      L      +VV+
Sbjct: 74  LGDQSVFLY-------------PVNELISSEIAVASPELRAQRLDVINRLTNGEAPVVVA 120

Query: 277 SVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +   +  +    + + +GD +E  +L + LV+  Y+R D+    G F + G  
Sbjct: 121 PVAAVRRMLPPKELWKSSQLVISLGDEIEPDQLSARLVEVGYERSDMVSAPGEFSIRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E    R+ +F  +++ I  F     + I  ++ + I      +        A
Sbjct: 181 IDIYPLTSE-HPVRIELFDTEVDSIRSFNSDDQRSIETLKHVAIGPAKELIIRAEEKARA 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           M+ + + L      L+K  +  + + L   I++D E L T  + Q +  Y  Y       
Sbjct: 240 MERLDKGLA---DSLKKLKQDKQKEMLHINISHDKERLSTGQTDQELVKYLSYFY----- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E P +L +Y P D+LL +DE          + + +     +L E G  L     +   + 
Sbjct: 292 EKPASLLDYTPADTLLLLDEVSRIHEMEDQLQKEEAEFMTSLLEEGKILHDIHLSFSFQE 351

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                 RP             L   Q    + I+  T        ++S   Q+  +  E+
Sbjct: 352 LMSEKRRPAIYYSLF------LRHVQHTSPQNIVNVTSRQ-----MQSFHGQMNVLAGEM 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    ++     K   + L   L +  I      S           + L  G+  V
Sbjct: 401 ERFKKSNFTVVFLGANKDRTDRLASVLADYEIEAAKTDSS----------KALVQGQ--V 448

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            V    L+ G ++P   L  I + +       K    Q +
Sbjct: 449 YVMEGELQSGFELPLMKLAVITEEELFKNRIKKKPRKQKL 488



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +     + +V Y H ++   E   ++ +   G+ DVLV   +
Sbjct: 834 QVYFLYNRVDDIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + D DK G  +    L Q  GR  R+       +     K +    
Sbjct: 894 IETGVDIPNVNTLIVFDGDKMGLSQ----LYQLRGRVGRSNRVAYAYFTYRRDKVLTEVA 949

Query: 702 D 702
           +
Sbjct: 950 E 950


>gi|228905850|ref|ZP_04069748.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
           200]
 gi|228853790|gb|EEM98549.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
           200]
          Length = 1176

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 105/630 (16%), Positives = 231/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L E  + I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAEGENGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E++K    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVKFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +++++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIQHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     +  
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGKIIQDL--SFS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FE +   +  +  V  T     +       +  +   T        ++    Q+  + 
Sbjct: 347 HAFEGFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMNLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963


>gi|229188339|ref|ZP_04315388.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 10876]
 gi|228595138|gb|EEK52908.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 10876]
          Length = 1176

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 104/630 (16%), Positives = 232/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +++++E L   + +L  +       ++ + +++++EML+   S + +  Y       
Sbjct: 237 KSGIQHLEEGLTKTMQKLSDDKL---KTKVLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     + P
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHP 348

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FE +   +  +  V  T     +       +  +   T        ++    Q+  + 
Sbjct: 349 --FEGFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMNLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963


>gi|152973901|ref|YP_001373418.1| transcription-repair coupling factor [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022653|gb|ABS20423.1| transcription-repair coupling factor [Bacillus cytotoxicus NVH
           391-98]
          Length = 1176

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 104/630 (16%), Positives = 231/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              +  ++ G+    K QL+ G+  S ++  MA + +  ++  +V+  N   A ++Y + 
Sbjct: 11  NKEVQSIINGLEEGLKEQLVSGMATSSRSLLMAALYKKTKQSQLVVTHNLYQAQKIYEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            +      V  +             P  +    +    + ++   R      L    + I
Sbjct: 71  VSLLGEKDVWLY-------------PVNELIASEVGVASPELKAQRIEVLNRLAAGENGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  +++ +G  V+   LL +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPMKELWKQKQIEINLGQEVDLDALLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E++K    + +V     L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVEEQRSQDKRESVKFGPATEFVFSPEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++++++ L   + +L  +        + + +++++E+L+   + + +  Y       
Sbjct: 237 RVGIEHLEKGLMKTMQKLSDDKIKTA---VLETVSHEIELLKNGQNIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PE+ ++ +DE        S +   +     +L   G  +   +    
Sbjct: 293 ----EPASLIDYLPENGVVILDEISRVQETASHLETEEAEWYTSLLSEGAIIQDLV--FS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FEE+   +  +  V  T     +       +  +   T        ++    Q++ + 
Sbjct: 347 HSFEEFLRHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMQLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++    +  A+ L   L + +I    + S             L  G+
Sbjct: 398 TEIDRWNEGQFTTVILGTDEERAKKLQHILSDYDIEADIIES----------TDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSRRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALIREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G++DVLV   +
Sbjct: 834 QIYFLYNRVEDIERKADEISMLVPEARVTYAHGKMNESELESVMLSFLEGQYDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVYDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963


>gi|229142859|ref|ZP_04271302.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST24]
 gi|228640622|gb|EEK97009.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST24]
          Length = 1183

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 103/630 (16%), Positives = 231/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 18  NEEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 77

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 78  VALLGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLATGENGI 124

Query: 274 VVSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +     ++  + Q  V++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 125 IVAPVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLR 184

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 185 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEEL 243

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +++++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 244 KSGIQHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 299

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     + P
Sbjct: 300 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHP 355

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FE +   +  +  V  T     +       +  +   T        ++    Q+  + 
Sbjct: 356 --FEGFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMNLLK 404

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 405 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 454

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 455 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 512

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 513 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 568

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 569 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 598



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 781 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 840

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 841 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 900

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 901 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 952

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 953 SEVAEKRLQAIKEFTELG 970


>gi|196036345|ref|ZP_03103742.1| transcription-repair coupling factor [Bacillus cereus W]
 gi|196041756|ref|ZP_03109046.1| transcription-repair coupling factor [Bacillus cereus NVH0597-99]
 gi|196047377|ref|ZP_03114590.1| transcription-repair coupling factor [Bacillus cereus 03BB108]
 gi|218901255|ref|YP_002449089.1| transcription-repair coupling factor [Bacillus cereus AH820]
 gi|225862106|ref|YP_002747484.1| transcription-repair coupling factor [Bacillus cereus 03BB102]
 gi|228925307|ref|ZP_04088404.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931556|ref|ZP_04094463.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228943860|ref|ZP_04106246.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229089185|ref|ZP_04220467.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-42]
 gi|229119716|ref|ZP_04248978.1| Transcription-repair-coupling factor [Bacillus cereus 95/8201]
 gi|229182448|ref|ZP_04309700.1| Transcription-repair-coupling factor [Bacillus cereus BGSC 6E1]
 gi|301051789|ref|YP_003790000.1| transcription-repair coupling factor [Bacillus anthracis CI]
 gi|195990975|gb|EDX54946.1| transcription-repair coupling factor [Bacillus cereus W]
 gi|196021779|gb|EDX60473.1| transcription-repair coupling factor [Bacillus cereus 03BB108]
 gi|196027376|gb|EDX65993.1| transcription-repair coupling factor [Bacillus cereus NVH0597-99]
 gi|218538935|gb|ACK91333.1| transcription-repair coupling factor [Bacillus cereus AH820]
 gi|225786910|gb|ACO27127.1| transcription-repair coupling factor [Bacillus cereus 03BB102]
 gi|228601028|gb|EEK58596.1| Transcription-repair-coupling factor [Bacillus cereus BGSC 6E1]
 gi|228663741|gb|EEL19319.1| Transcription-repair-coupling factor [Bacillus cereus 95/8201]
 gi|228694148|gb|EEL47829.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-42]
 gi|228815817|gb|EEM62052.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228828108|gb|EEM73835.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228834354|gb|EEM79894.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|300373958|gb|ADK02862.1| transcription-repair coupling factor [Bacillus cereus biovar
           anthracis str. CI]
          Length = 1176

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 103/630 (16%), Positives = 230/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L      I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  +++ +G  ++    L +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPMKELWKQRQIEISLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +K+++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIKHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYN- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     +  
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLESEEAEWYISLLGEGTIIQDL--SFS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FEE+   +  +  V  T     +       +  +   T        ++    Q++ + 
Sbjct: 347 HSFEEFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMQLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIDA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963



 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++ K +       +LL G  G GKT   +    +A+  ++  
Sbjct: 616 FESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQV 675

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
            ++ P  ILA Q Y   +  F  
Sbjct: 676 AILVPTTILAQQHYETIRERFQD 698


>gi|52145163|ref|YP_081665.1| transcription-repair coupling factor [Bacillus cereus E33L]
 gi|51978632|gb|AAU20182.1| transcription-repair coupling factor [Bacillus cereus E33L]
          Length = 1176

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 103/630 (16%), Positives = 230/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L      I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  +++ +G  ++    L +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +K+++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIKHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYN- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     +  
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLSEGTIIQDL--SFS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FEE+   +  +  V  T     +       +  +   T        ++    Q++ + 
Sbjct: 347 HSFEEFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMQLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIDA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963



 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++ K +       +LL G  G GKT   +    +A+  ++  
Sbjct: 616 FESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQV 675

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
            ++ P  ILA Q Y   +  F  
Sbjct: 676 AILVPTTILAQQHYETIRERFQD 698


>gi|75759615|ref|ZP_00739701.1| Transcription-repair coupling factor [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74492906|gb|EAO56036.1| Transcription-repair coupling factor [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 1186

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 103/630 (16%), Positives = 229/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 21  NKEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 80

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 81  VALLGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGI 127

Query: 274 VVSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +     ++  + Q  V++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 128 IVAPVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLR 187

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E++K    + ++  +  L
Sbjct: 188 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVKFGPATEFLFSQEEL 246

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +++++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 247 KSGIQHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 302

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     +  
Sbjct: 303 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDL--SFS 356

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FE +   +     V  T     +       +  +   T        ++    Q+  + 
Sbjct: 357 HAFEGFLHHKKRN-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMNLLK 407

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 408 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 457

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 458 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 515

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 516 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 571

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 572 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 601



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 784 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 843

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 844 QIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 903

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 904 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 955

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 956 SEVAEKRLQAIKEFTELG 973


>gi|228956495|ref|ZP_04118292.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228803185|gb|EEM50006.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 1183

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 104/630 (16%), Positives = 231/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 18  NEEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 77

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 78  VALLGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGI 124

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 125 IVAPVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLR 184

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 185 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEEL 243

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +++++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 244 KSGIQHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 299

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     + P
Sbjct: 300 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHP 355

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FE +   +  +  V  T     +       +  +   T        ++    Q+  + 
Sbjct: 356 --FEGFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMNLLK 404

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 405 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 454

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 455 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 512

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 513 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 568

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 569 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 598



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 71/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 781 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 840

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G++DVLV   +
Sbjct: 841 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQYDVLVSTTI 900

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 901 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 952

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 953 SEVAEKRLQAIKEFTELG 970


>gi|42779132|ref|NP_976379.1| transcription-repair coupling factor [Bacillus cereus ATCC 10987]
 gi|206977924|ref|ZP_03238811.1| transcription-repair coupling factor [Bacillus cereus H3081.97]
 gi|217957629|ref|YP_002336171.1| transcription-repair coupling factor [Bacillus cereus AH187]
 gi|222093823|ref|YP_002527872.1| transcription-repair coupling factor [Bacillus cereus Q1]
 gi|229136900|ref|ZP_04265528.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26]
 gi|42735047|gb|AAS38987.1| transcription-repair coupling factor [Bacillus cereus ATCC 10987]
 gi|206743830|gb|EDZ55250.1| transcription-repair coupling factor [Bacillus cereus H3081.97]
 gi|217067660|gb|ACJ81910.1| transcription-repair coupling factor [Bacillus cereus AH187]
 gi|221237870|gb|ACM10580.1| transcription-repair coupling factor [Bacillus cereus Q1]
 gi|228646565|gb|EEL02771.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26]
          Length = 1176

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 103/630 (16%), Positives = 230/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L      I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  +++ +G  ++    L +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPMKELWKQRQIEISLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +K+++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIKHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYN- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     +  
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDL--SFS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FEE+   +  +  V  T     +       +  +   T        ++    Q++ + 
Sbjct: 347 HSFEEFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMQLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963



 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++ K +       +LL G  G GKT   +    +A+  ++  
Sbjct: 616 FESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQV 675

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
            ++ P  ILA Q Y   +  F  
Sbjct: 676 AILVPTTILAQQHYETIRERFQD 698


>gi|238922870|ref|YP_002936383.1| transcription-repair coupling factor [Eubacterium rectale ATCC
           33656]
 gi|238874542|gb|ACR74249.1| transcription-repair coupling factor [Eubacterium rectale ATCC
           33656]
          Length = 1177

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 86/520 (16%), Positives = 187/520 (35%), Gaps = 44/520 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             ++ K       +  + G   + K+  +       ++  +++   +  A +LY E+   
Sbjct: 14  FEEMTKTAEKSSGLISVTGCIDAQKSQMIYA-FGGHRKNKLIVTFGEQKAKELYDEYS-- 70

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           F    V Y+             P  D    +       +   R  A +++ E+    +V+
Sbjct: 71  FFDKEVVYY-------------PSKDVLFYQSDIRGNLLTAERIRALKAIREQERVTLVT 117

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +   +   +  +E   + ++ L+ G  ++ KE+ ++L++  Y+++      G F V G  
Sbjct: 118 TFDALMNTMAPIEKMWENVLTLEQGQLLDLKEIQAALIRMGYEKEYQVQTMGQFSVRGGI 177

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +++FP   E+   R+ ++G++I+ I  F   + + I N++ + IY  +  V         
Sbjct: 178 LDVFPL-TEENPIRIELWGDEIDTIRYFDCESQKSIENIDRVSIYPAAELVLSDEEKAGG 236

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +  +K E K    +L K+ +  EA R+        E          ++ +  Y      G
Sbjct: 237 IDKLKAEAKRVSDKLRKQMKTEEAHRVTVMADELTEEWGELSMYAGMDAFLSYFFDERVG 296

Query: 456 EPPPTLFEYI-PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
                + +Y  P DSL+F DE      Q                  G+ LP  M+     
Sbjct: 297 -----ILDYFNPSDSLIFFDELTRCTEQGKLTETEFSESMKQRLAMGYILPGQMNGL--- 348

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           F E   +            + + +      +               +       E +  +
Sbjct: 349 FTEKEIVAKLGKYSCIALAALDNKANGLHQLGSYGIHCQS------VSPYNNSFELLIKD 402

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +    + G R++L   ++  A+ L+E + ++ I   Y               +L  G+  
Sbjct: 403 LKRYKKNGYRVILLSGSRTRAKRLSEDITDQGITCFYT---------ENYDHELFEGQ-- 451

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++V    +R G + P      I ++D  G  + K    +T
Sbjct: 452 IMVCYGKVRRGFEYPILKFAVITESDIFGAQQKKKKRHRT 491



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 77/202 (38%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +  +    L +PP++    +T V     E V + IN   
Sbjct: 777 VLTLTATPIPRTLHMSLIGIRDMSV----LEEPPMDRVPIQTYVMEYNDELVREAINREL 832

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++       R   D+T  L E   +  V + H ++K  E   I+     G+ DVLV
Sbjct: 833 ARNGQVYYVYNKVRDIADITAKLQELVPDATVAFAHGQMKETELERIMYRFINGEIDVLV 892

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + I DAD  G  +    L Q  GR  R+  +          K +
Sbjct: 893 STTIIETGLDISNVNTMIIHDADNMGLSQ----LYQLRGRVGRSNRTAYAFLMYRRNKML 948

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
           +    E   +R   ++      
Sbjct: 949 K----EVAEKRLAAIKEYSDLG 966



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 62/153 (40%), Gaps = 11/153 (7%)

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           ++      + + AT       Q   I+   I    G     V IR+A   V+D      L
Sbjct: 625 FDETEDQILAIEATKTDM---QSHKIMDRLICGDVGYGKTEVAIRAAFKAVQDSKQVAYL 681

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A         T+L +++ +  ++ + +  + V  M       E+ + I  L+ G+ D+++
Sbjct: 682 AP-------TTILAQQIYDTFSQRMKDFPVNVDLMCRFRSAAEQKKTIEKLKKGEVDIII 734

Query: 638 GIN-LLREGLDIPECGLVAILDADKEGFLRSKT 669
           G + +L + +   + GL+ I +  + G    + 
Sbjct: 735 GTHRILSKDVQFKDLGLLVIDEEQRFGVTHKEK 767


>gi|218895189|ref|YP_002443600.1| transcription-repair coupling factor [Bacillus cereus G9842]
 gi|218545395|gb|ACK97789.1| transcription-repair coupling factor [Bacillus cereus G9842]
          Length = 1176

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 104/630 (16%), Positives = 229/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NKEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E++K    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVKFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +++++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIQHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     +  
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDL--SFS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FE +   +     V  T     +       +  +   T        ++    Q+  + 
Sbjct: 347 HAFEGFLHHKKRN-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMNLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLSGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963


>gi|218231044|ref|YP_002364903.1| transcription-repair coupling factor [Bacillus cereus B4264]
 gi|218159001|gb|ACK58993.1| transcription-repair coupling factor [Bacillus cereus B4264]
          Length = 1176

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 104/630 (16%), Positives = 231/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +++++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIQHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     + P
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHP 348

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FE +   +  +  V  T     +       +  +   T        ++    Q+  + 
Sbjct: 349 --FEGFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMNLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALIREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963


>gi|229148463|ref|ZP_04276720.1| Transcription-repair-coupling factor [Bacillus cereus m1550]
 gi|228635005|gb|EEK91577.1| Transcription-repair-coupling factor [Bacillus cereus m1550]
          Length = 1176

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 104/630 (16%), Positives = 231/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +++++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIQHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     + P
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHP 348

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FE +   +  +  V  T     +       +  +   T        ++    Q+  + 
Sbjct: 349 --FEGFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMNLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALIREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963


>gi|228898807|ref|ZP_04063090.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
           4222]
 gi|228860832|gb|EEN05209.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
           4222]
          Length = 1176

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 104/630 (16%), Positives = 229/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NKEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E++K    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVKFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +++++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIQHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     +  
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDL--SFS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FE +   +     V  T     +       +  +   T        ++    Q+  + 
Sbjct: 347 HAFEGFLHHKKRN-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMNLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963


>gi|229039959|ref|ZP_04189723.1| Transcription-repair-coupling factor [Bacillus cereus AH676]
 gi|229107740|ref|ZP_04237377.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-15]
 gi|296500886|ref|YP_003662586.1| transcription-repair coupling factor [Bacillus thuringiensis
           BMB171]
 gi|228675713|gb|EEL30920.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-15]
 gi|228727367|gb|EEL78560.1| Transcription-repair-coupling factor [Bacillus cereus AH676]
 gi|296321938|gb|ADH04866.1| transcription-repair coupling factor [Bacillus thuringiensis
           BMB171]
          Length = 1176

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 104/630 (16%), Positives = 231/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +++++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIQHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     + P
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHP 348

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FE +   +  +  V  T     +       +  +   T        ++    Q+  + 
Sbjct: 349 --FEGFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMNLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963


>gi|206972595|ref|ZP_03233538.1| transcription-repair coupling factor [Bacillus cereus AH1134]
 gi|228950602|ref|ZP_04112737.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229176654|ref|ZP_04304059.1| Transcription-repair-coupling factor [Bacillus cereus 172560W]
 gi|206732497|gb|EDZ49676.1| transcription-repair coupling factor [Bacillus cereus AH1134]
 gi|228606821|gb|EEK64237.1| Transcription-repair-coupling factor [Bacillus cereus 172560W]
 gi|228809077|gb|EEM55561.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 1176

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 104/630 (16%), Positives = 231/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E ++    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKENVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +++++E L   + +L  +       ++ + +++++EML+   S + +  Y       
Sbjct: 237 KSGIQHLEEGLTKTMQKLSDDKL---KTKVLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     + P
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHP 348

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FE +   +  +  V  T     +       +  +   T        ++    Q+  + 
Sbjct: 349 --FEGFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMNLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963


>gi|251794075|ref|YP_003008806.1| transcription-repair coupling factor [Paenibacillus sp. JDR-2]
 gi|247541701|gb|ACS98719.1| transcription-repair coupling factor [Paenibacillus sp. JDR-2]
          Length = 1175

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 94/534 (17%), Positives = 199/534 (37%), Gaps = 69/534 (12%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           +   +    D    +  ++ G+    + Q++ G+ GS +   +A V + + RP +V+  N
Sbjct: 4   LVQAFAADPD----VQSIIAGVRKGMREQMISGLAGSSRQVLVAAVKDDLDRPLLVVTHN 59

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
              A ++  + +     + V  +             P  +    + +  + +    R   
Sbjct: 60  MYAAQKIAEDLQECISADDVLLY-------------PANELVAAEAAISSPETLAQRMDV 106

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVE-SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
              L E    IVV   S I     ++   S   + +K+GD++E    L  +    Y R D
Sbjct: 107 LIKLSEGFRGIVVVPFSGIRRYQPIKGVMSDAKILIKVGDTIELDGFLRQMTGLGYIRAD 166

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               +G   V G  ++ +P   E +A+R+  FG++++ I  F P   + + N++T  +  
Sbjct: 167 RVESKGEMSVRGGIVDFYPLTAE-LAYRIEWFGDEVDSIRTFDPSDQRSLDNLQTFTVTP 225

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
               V  +   + A ++    L  +L ++      +   RL Q I  ++E L        
Sbjct: 226 CQEIVADQRRFSAAAEHAATLLAQQLDKMTDR---MAKDRLRQEIGGEIEKLREHVYFPE 282

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           I  Y   L          T+ +Y+P+D++L +DE    I     + R +      L   G
Sbjct: 283 IYKYISLLYPERQ-----TILDYMPDDTVLILDEPTRLIETGRQLERDEAEWSTHLLSNG 337

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII--RPTGLVDPPV 559
             LPS M  R    E  +  +  T+ +S             + + QI   +P  +++   
Sbjct: 338 KSLPSFMLARESD-EILHHRKFQTLFMS-------------LFLRQIPHSQPQNILNMTS 383

Query: 560 E-IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
             +++   Q+  +  E+    + G ++++        + +   L + +I           
Sbjct: 384 RAMQNFHGQMNVLKAEMERWKKTGAKVMMLGGNAERLDRIRRVLQDYHI----------- 432

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
                        +  +L+    L+ G ++P   LV I + +     + K   +
Sbjct: 433 -------------EPPILIE-GNLQSGFELPSSHLVIITEGEMFSQKQRKARRM 472



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYSTSLVREAIERELARGG 821

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +    + E +     + +V   H ++   E  + I D   G+ DVLV  ++
Sbjct: 822 QVYYLYNRVQGIYQMAEQINALVPDAKVAVGHGQMSEQELEKTILDFLDGESDVLVSTSI 881

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DIP    + + DADK G L     L   +GR+ R   +      D +   +  
Sbjct: 882 IETGVDIPNVNTLIVHDADKMG-LSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAE 938


>gi|297582393|ref|YP_003698173.1| transcription-repair coupling factor [Bacillus selenitireducens
           MLS10]
 gi|297140850|gb|ADH97607.1| transcription-repair coupling factor [Bacillus selenitireducens
           MLS10]
          Length = 1186

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 92/549 (16%), Positives = 188/549 (34%), Gaps = 53/549 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + +++KGI      Q L+G++GS +   +A +     +  +++  N   A +LY +    
Sbjct: 14  LEKVIKGIEDGAGDQSLVGISGSARAMHLAALFRRTGKSQLIVTHNLFQAQKLYDDLITV 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + V  +             P  +    + +  + ++   R             IV++
Sbjct: 74  LNTDDVLLY-------------PANELISSEIAVASPEMRGQRLEVMNEWSTGAKRIVIA 120

Query: 277 SVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    + + +  +   +G+ V+    L   V   Y R D+    G F V G  
Sbjct: 121 PVAGVRRLLSPPDLWQEQRLTFTVGEDVDFDRTLGQFVNMGYSRADMVSAPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+++P   E+   R+ +F  +++ I  F   T + +    T+        +        A
Sbjct: 181 IDVYP-LTEEYPVRIELFDTEVDSIRLFDVETQRSVDERSTVVAGPAREIIVQDVQYIRA 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
            + + E+L   L  L+ +      + +   +  ++E L+      +I  Y   L      
Sbjct: 240 AERLDEQLAKSLKRLKDD---QIKETMINNVGEEIESLKNRQFFDAIYKYMTLLY----- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E P TLF+Y+P+D+L+ +DE        + + R +      +   G  +     +  L  
Sbjct: 292 ERPATLFDYMPDDTLVVLDEWARVQETAATLEREEAEWMTMMIAQGAMVHDLSVSATLEH 351

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                 R    ++             G  + ++            ++    Q+  +  E+
Sbjct: 352 LVSETERQKLYIMLF-----------GRQIPKVGPDRTYNVQTKTMQQFHGQIHLLKTEV 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               + G  I+        AE L   L +  I      S  K        +         
Sbjct: 401 ERWKEAGYAIVFVSGDDERAEKLERVLADYEIEA----SPAKAGSEPVKGKA-------- 448

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-------SKVIL 688
           L+   LL  G ++P   +V I + D       K    Q +  A R  N         V+ 
Sbjct: 449 LIVQGLLHNGFELPLQRIVVIAEEDVFTRKSRKPKRRQKLSNAERIKNYSELKTGDWVVH 508

Query: 689 YADTITKSI 697
               I K +
Sbjct: 509 INHGIGKYL 517



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +  
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEHNDAFVREAIERELAREG 833

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E + + +     +  + + H  +   +   ++ D   G+ DVLV   +
Sbjct: 834 QVFYLYNRVEDIEMVADRIGMMVPDANIAFAHGRMTEAQLEAVMLDFLSGETDVLVTTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I +AD+ G  +    L Q  GR  R+       +     K     +
Sbjct: 894 IETGVDIPNVNTLIIQEADRMGLSQ----LYQLRGRVGRSNRVAYAYFTHQQDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   RR + ++   +  
Sbjct: 946 TEVAERRLQSIKEFTELG 963



 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  AI ++ K +   R   +LL G  G GKT   +    +A+   +  
Sbjct: 616 FESTFPYQETDDQLQAIEEIKKDMEQDRPMDRLLCGDVGYGKTEVALRAAFKAIMDGKQV 675

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAV 222
            ++ P  ILA Q Y   +  F   A+
Sbjct: 676 AILVPTTILAQQHYETIRERFQDFAI 701


>gi|30018324|ref|NP_829955.1| transcription-repair coupling factor [Bacillus cereus ATCC 14579]
 gi|229125571|ref|ZP_04254604.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4]
 gi|29893864|gb|AAP07156.1| Transcription-repair coupling factor [Bacillus cereus ATCC 14579]
 gi|228657888|gb|EEL13693.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4]
          Length = 1176

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 104/630 (16%), Positives = 231/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +++++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIQHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     + P
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHP 348

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FE +   +  +  V  T     +       +  +   T        ++    Q+  + 
Sbjct: 349 --FEGFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMNLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963


>gi|228912793|ref|ZP_04076441.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228846853|gb|EEM91857.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 1176

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 103/630 (16%), Positives = 230/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L      I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  +++ +G  ++    L +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +K+++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIKHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYN- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     +  
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLESEEAEWYISLLGEGTIIQDL--SFS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FEE+   +  +  V  T     +       +  +   T        ++    Q++ + 
Sbjct: 347 HSFEEFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMQLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIDA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963



 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++ K +       +LL G  G GKT   +    +A+  ++  
Sbjct: 616 FESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQV 675

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
            ++ P  ILA Q Y   +  F  
Sbjct: 676 AILVPTTILAQQHYETIRERFQD 698


>gi|49479988|ref|YP_034406.1| transcription-repair coupling factor [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49331544|gb|AAT62190.1| transcription-repair coupling factor [Bacillus thuringiensis
           serovar konkukian str. 97-27]
          Length = 1178

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 103/630 (16%), Positives = 230/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 13  NEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 72

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L      I
Sbjct: 73  VALLGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGI 119

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  +++ +G  ++    L +L    Y+R+ +    G F + 
Sbjct: 120 IVAPVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLR 179

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 180 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEEL 238

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +K+++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 239 KSGIKHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYN- 294

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     +  
Sbjct: 295 ----EPASLIDYLPEDGVVILDEISRIQETASHLESEEAEWYISLLGEGTIIQDL--SFS 348

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FEE+   +  +  V  T     +       +  +   T        ++    Q++ + 
Sbjct: 349 HSFEEFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMQLLK 399

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 400 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIDA-----DI-----VEGTDILLPGR 449

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 450 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 507

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 508 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 563

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 564 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 593



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 776 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 835

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 836 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 895

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 896 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 947

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 948 SEVAEKRLQAIKEFTELG 965



 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++ K +       +LL G  G GKT   +    +A+  ++  
Sbjct: 618 FESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQV 677

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
            ++ P  ILA Q Y   +  F  
Sbjct: 678 AILVPTTILAQQHYETIRERFQD 700


>gi|47569902|ref|ZP_00240569.1| transcription-repair coupling factor [Bacillus cereus G9241]
 gi|228983309|ref|ZP_04143523.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229194444|ref|ZP_04321248.1| Transcription-repair-coupling factor [Bacillus cereus m1293]
 gi|47553436|gb|EAL11820.1| transcription-repair coupling factor [Bacillus cereus G9241]
 gi|228589034|gb|EEK47048.1| Transcription-repair-coupling factor [Bacillus cereus m1293]
 gi|228776423|gb|EEM24775.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 1176

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 103/630 (16%), Positives = 229/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L      I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  +++ +G  ++    L +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +K+++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIKHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYN- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +        
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLT--FS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FEE+   +  +  V  T     +       +  +   T        ++    Q++ + 
Sbjct: 347 HSFEEFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMQLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963



 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++ K +       +LL G  G GKT   +    +A+  ++  
Sbjct: 616 FESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQV 675

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
            ++ P  ILA Q Y   +  F  
Sbjct: 676 AILVPTTILAQQHYETIRERFQD 698


>gi|324324043|gb|ADY19303.1| transcription-repair coupling factor [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 1176

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 103/630 (16%), Positives = 230/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L      I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  +++ +G  ++    L +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +K+++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIKHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYN- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     +  
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDL--SFS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FEE+   +  +  V  T     +       +  +   T        ++    Q++ + 
Sbjct: 347 HSFEEFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMQLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963



 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++ K +       +LL G  G GKT   +    +A+  ++  
Sbjct: 616 FESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQV 675

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
            ++ P  ILA Q Y   +  F  
Sbjct: 676 AILVPTTILAQQHYETIRERFQD 698


>gi|229153832|ref|ZP_04281963.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 4342]
 gi|228629636|gb|EEK86332.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 4342]
          Length = 1176

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 103/630 (16%), Positives = 229/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L      I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASELGVASPELKAQRIEVLNRLAAGEHGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  +++ +G  ++    L +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +K+++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIKHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYN- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +        
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLT--FS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FEE+   +  +  V  T     +       +  +   T        ++    Q++ + 
Sbjct: 347 HSFEEFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMQLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPIQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963



 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++ K +       +LL G  G GKT   +    +A+  ++  
Sbjct: 616 FESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQV 675

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
            ++ P  ILA Q Y   +  F  
Sbjct: 676 AILVPTTILAQQHYETIRERFQD 698


>gi|229015456|ref|ZP_04172457.1| Transcription-repair-coupling factor [Bacillus cereus AH1273]
 gi|228745840|gb|EEL95841.1| Transcription-repair-coupling factor [Bacillus cereus AH1273]
          Length = 1176

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 104/630 (16%), Positives = 231/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGI 117

Query: 274 VVSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +     ++  + Q  +++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E++K    + ++  +  L
Sbjct: 178 GGILDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVKFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              +K+++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KLGIKHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     +  
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDL--SFS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FEE+   +  +  V  T     +       +  +   T        ++    Q++ + 
Sbjct: 347 HSFEEFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMQLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEATDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   RR + ++   +  
Sbjct: 946 SEVAERRLQAIKEFTELG 963


>gi|229074115|ref|ZP_04207162.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-18]
 gi|229094775|ref|ZP_04225781.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-29]
 gi|229113728|ref|ZP_04243164.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-3]
 gi|228669725|gb|EEL25131.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-3]
 gi|228688643|gb|EEL42515.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-29]
 gi|228709009|gb|EEL61135.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-18]
          Length = 1176

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 103/630 (16%), Positives = 232/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + +
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGV 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  +++ +G  ++ + LL +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPIKELWKQKQIEINLGQEIDLEALLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E++K    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVKFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +K+++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIKHLEEGLTKTMQKLSDDKLKTA---VLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     +  
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDL--SFS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FE +   +  +  V  T     +       +  +   T        ++    Q++ + 
Sbjct: 347 HSFEGFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMQLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   RR + ++   +  
Sbjct: 946 SEVAERRLQAIKEFTELG 963



 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++ K +       +LL G  G GKT   +    +A+  ++  
Sbjct: 616 FESSFPYQETDDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQV 675

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
            ++ P  ILA Q Y   +  F  
Sbjct: 676 AILVPTTILAQQHYETIRERFQD 698


>gi|229170904|ref|ZP_04298507.1| Transcription-repair-coupling factor [Bacillus cereus MM3]
 gi|228612570|gb|EEK69789.1| Transcription-repair-coupling factor [Bacillus cereus MM3]
          Length = 1176

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 102/630 (16%), Positives = 231/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  +++ +G  ++    L +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +++++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIEHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     +  
Sbjct: 293 ----EPASLIDYLPEDGIVVLDEISRIQETASHLETEEAEWYISLLGEGTIIQDL--SFS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FEE+   +  +  V  T     +       +  +   T        ++    Q++ + 
Sbjct: 347 HSFEEFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMQLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963


>gi|302669664|ref|YP_003829624.1| transcription-repair coupling factor Mfd [Butyrivibrio
           proteoclasticus B316]
 gi|302394137|gb|ADL33042.1| transcription-repair coupling factor Mfd [Butyrivibrio
           proteoclasticus B316]
          Length = 1191

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 98/517 (18%), Positives = 197/517 (38%), Gaps = 60/517 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             ++ + +        + G   S K   +  +    +   I++  + + A ++Y ++K +
Sbjct: 14  FQEINEYLDKPFACAEVTGCVDSQKLHFIDSIGAGFKYR-IIVTYSDLRAKEIYEDYKFY 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
             +  V                P  D    +    + +I R R    R LLE     VV+
Sbjct: 73  DRNVTVY---------------PAKDLIFYQADVHSNEIVRQRIRTMRRLLEGRPVTVVT 117

Query: 277 SVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           + + +       E     I+++     +++ E+   L    Y R       G F V GD 
Sbjct: 118 TFAALMAPQIRPEIIRDNILEIDKHKPIDEIEIAKRLTTMGYIRNYQVEGPGEFSVRGDI 177

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +++F    E+  +R+ ++G++I+ I  F  L+ + +  +E+I+IY  S  +     L+  
Sbjct: 178 VDVF-DLTEENPFRIELWGDEIQSIRSFDILSQRSLEKLESIEIYPASEIILTEQLLSEG 236

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           M  I+E+   R+  L  E +  EA +L+ +     E L    S  ++E+Y RY       
Sbjct: 237 MDRIQEDTDKRVELLRSEFKTKEAHQLKTQTEELREQLFELKSLVNLESYIRYFYP---- 292

Query: 456 EPPPTLFEYIPED-SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
               T+ E  P+  S +F+DE          +           AE G+ LP  MD   L 
Sbjct: 293 -DTVTMQEMFPKGKSCIFIDEPQRVQEHAWAVETEFKESMTHRAEKGYTLPGQMD---LL 348

Query: 515 FEEWNCLR----PTTIVVSA-----TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565
           +   NC+        +++SA     +   +E E+   I    I                 
Sbjct: 349 YSIDNCIARMGNGRRVLISALQMPKSQNLFEPEKTWDIRARSIA-------------PYN 395

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
              E +  ++    ++G R+L+   ++  A+ + + L +  +   Y           +  
Sbjct: 396 NSFESLVSDLKKYVKEGYRVLILSGSRTRAKRIVDDLRDNLVTAFY---------SEDPG 446

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
           R L+ G+  ++     + +G + PE     I ++D  
Sbjct: 447 RVLKPGE--IMTYYGRILKGFEYPEIKFAVIAESDIF 481



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP-PVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      I E  +      D  P++        E + + I     +  
Sbjct: 786 VLTLSATPIPRTLHMSLVGIREMSVLEEAPNDRMPIQTYVMEYNDELIREAIARELARNG 845

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++           D+   + +      V + H ++K  E   I+ D   G  DVLV   +
Sbjct: 846 QVYYVYNRVNTIADVAAQIQKLVPEANVAFAHGQMKESELERIMYDFIDGTIDVLVSTTI 905

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-- 699
           +  GLDIP    + I D+DK G L     L   +GR+ R   + ++   D + K +    
Sbjct: 906 IETGLDIPNVNTMIIHDSDKMG-LSQLYQLRGRVGRSNRTAYAFLMYKKDKMLKEVAEKR 964

Query: 700 --AIDE 703
             AI E
Sbjct: 965 LSAIRE 970



 Score = 38.5 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 55/166 (33%), Gaps = 16/166 (9%)

Query: 61  AKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNG 120
            K         T  K +     S+  S   T+   +  +    Q L  L          G
Sbjct: 560 QKYASGGDDSETTHKPKLNKLGSVEWS--HTKSKVKAAVEEVAQDLVELYAKRQE--AKG 615

Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSR-EKVQLLLGVTGS 179
             ++P   W           F+    Y  + DQ  AI    + + S     +L+ G  G 
Sbjct: 616 HQFSPDTVWQQE--------FEDAFPYQETDDQLTAIEDTKRDMESGIIMDRLVCGDVGF 667

Query: 180 GKT-FTMAKVIEAMQ--RPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           GKT   +    +A+Q  +   V+ P  ILA Q Y+ F        V
Sbjct: 668 GKTEIAIRAAFKAVQDGKQVAVLVPTTILAQQHYNTFSERMRDFPV 713



 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 88/227 (38%), Gaps = 21/227 (9%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A Q G ++ + V T    ++     +E + +  +RV  M       E+
Sbjct: 668 GKTEIAIRAAFKAVQDGKQVAVLVPTTILAQQHYNTFSERMRDFPVRVDLMSRFRTAAEQ 727

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEG-----FLRSKTSLIQTI 675
            + I DL+ G  D+++G + LL + +   + GL+ + +  + G      L++    I  +
Sbjct: 728 KKTIVDLKKGLVDIVIGTHRLLSKDVQYKDLGLLIVDEEQRFGVTHKEKLKTLKENIDVL 787

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ---LEHNKKHNINPQSVKEKIMEV 732
             +A  +   + +    I + + +  +    R   Q   +E+N +  +  +++  ++   
Sbjct: 788 TLSATPIPRTLHMSLVGIRE-MSVLEEAPNDRMPIQTYVMEYNDE--LIREAIARELARN 844

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
                + +   T   + AQ   L     +A++     QM      L 
Sbjct: 845 GQVYYVYNRVNTIADVAAQIQKLVP---EANVAFAHGQMKE--SELE 886


>gi|228937356|ref|ZP_04100003.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228976812|ref|ZP_04137225.1| Transcription-repair-coupling factor [Bacillus thuringiensis Bt407]
 gi|228782908|gb|EEM31073.1| Transcription-repair-coupling factor [Bacillus thuringiensis Bt407]
 gi|228822314|gb|EEM68295.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 1183

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 102/630 (16%), Positives = 230/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 18  NEEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 77

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 78  VALLGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGI 124

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 125 IVAPVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLR 184

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++++P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 185 GGILDVYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEEL 243

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +++++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 244 KSGIQHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 299

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     +  
Sbjct: 300 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDL--SFS 353

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FE +   +  +  V  T     +       +  +   T        ++    Q+  + 
Sbjct: 354 HAFEGFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMNLLK 404

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 405 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 454

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 455 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 512

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 513 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 568

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 569 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 598



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 781 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 840

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 841 QIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 900

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 901 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 952

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 953 SEVAEKRLQAIKEFTELG 970


>gi|229159227|ref|ZP_04287252.1| Transcription-repair-coupling factor [Bacillus cereus R309803]
 gi|228624242|gb|EEK81043.1| Transcription-repair-coupling factor [Bacillus cereus R309803]
          Length = 1176

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 104/630 (16%), Positives = 230/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  +R  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKRSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEVGVASPELKAQRIEVLNRLAAGENGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  +++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+I+    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESIRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +K+++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIKHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     +  
Sbjct: 293 ----EPTSLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDL--SFS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FE +   +  +  V  T     +       +  +   T        ++    Q++ + 
Sbjct: 347 HSFEGFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMQLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P    V I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKFVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963



 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++ K +       +LL G  G GKT   +    +A+  ++  
Sbjct: 616 FESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQV 675

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
            ++ P  ILA Q Y   +  F  
Sbjct: 676 AILVPTTILAQQHYETIRERFQD 698


>gi|228970242|ref|ZP_04130902.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228789477|gb|EEM37396.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|326937845|gb|AEA13741.1| transcription-repair coupling factor [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 1176

 Score =  239 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 102/630 (16%), Positives = 230/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++++P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDVYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +++++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIQHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     +  
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDL--SFS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FE +   +  +  V  T     +       +  +   T        ++    Q+  + 
Sbjct: 347 HAFEGFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMNLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963


>gi|23097518|ref|NP_690984.1| transcription-repair coupling factor [Oceanobacillus iheyensis
           HTE831]
 gi|22775741|dbj|BAC12019.1| transcription-repair coupling factor (TRCF) [Oceanobacillus
           iheyensis HTE831]
          Length = 1173

 Score =  239 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 82/506 (16%), Positives = 192/506 (37%), Gaps = 48/506 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  ++ G+ S  K Q++ G++GS ++  ++ + E+++RP +++      A QLY +F   
Sbjct: 14  IHSIVNGVTSGMKEQMIAGLSGSARSLVISAIHESIRRPVLIVTHQLAQAQQLYDDFVEL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +             P  +    + +  + ++   R  A          I+++
Sbjct: 74  VDDERVYLY-------------PVNELIASEIAIASPELRAQRIEALTEWTRHKSGILIA 120

Query: 277 SVSCIYGIGSVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  I   ++Y     +  K+G+ ++    LSSLV   Y+   +    G F   G  
Sbjct: 121 PVAALKRILPPQNYWDNYQLLFKLGNDIKIDHYLSSLVDMGYEHASMVTSPGEFSKRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E    R+ +F  +++ I  F   + + +  ++ + I   S  +     L   
Sbjct: 181 IDIYPI-TEKHPIRIELFDEEVDSIRYFDAESQRSLDKLDEVTIGPASELLLTDEDLLKT 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
            + ++E L   L +     +    ++L + I +D+   +     Q +  Y  YL      
Sbjct: 240 SEQLEEALATTLKK---VNKPEAKEQLVEVIEHDITRFKQLERFQEMYKYIGYLY----- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +L +Y+P + L+F DE        + +   +    A+L E    +          +
Sbjct: 292 SNPASLLDYLPSNGLVFFDEMSRIGETATNLDHEEAEWYASLLEGNKMV--QNSRFSFSW 349

Query: 516 EEW-NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           +E    +    + +S       +        E +I  +        ++    Q+    +E
Sbjct: 350 DEVMEGMNQQRVYMSVF-----MRHIPNTNPENVINLSSR-----TMQEFHGQMHLFKNE 399

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +    +    +++    ++ AE +   L + +I           + + E +  +++    
Sbjct: 400 LQRWEKGDYSVIILAADEQRAEKVHSILDDYDIET--------QISKKEPVLPVKMPTII 451

Query: 635 VLVGINLLREGLDIPECGLVAILDAD 660
           V      ++ G + P   L  + + +
Sbjct: 452 V----GNIQSGTEFPMHKLAVVTEQE 473



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 67/188 (35%), Gaps = 12/188 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPIQTYVTEYNPIFMREAIEREMGRGG 833

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          +    DL   + E  I V   H ++   E   +I     G+FD+LV  
Sbjct: 834 QVFFLYNRVESIDKIARDLGMLVPEAKIAVA--HGQMNESELENVIFSFLEGEFDILVST 891

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + +  AD  G L     L   +GR+ R   +      D +   +  
Sbjct: 892 TIIETGVDIPNVNTLIVNHADYMG-LSQLYQLRGRVGRSNRVAYAYFTYQKDKVLTEVAE 950

Query: 700 ----AIDE 703
               AI E
Sbjct: 951 KRLQAIKE 958


>gi|83588954|ref|YP_428963.1| transcription-repair coupling factor [Moorella thermoacetica ATCC
           39073]
 gi|83571868|gb|ABC18420.1| transcription-repair coupling factor [Moorella thermoacetica ATCC
           39073]
          Length = 1183

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 98/512 (19%), Positives = 197/512 (38%), Gaps = 47/512 (9%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            +  G+        L G+    K   +A +++    P +V+ P    A +L ++ ++F+P
Sbjct: 18  AIAGGLRRGAGEVQLYGLPEGMKGLWLAAMLDEFN-PILVVTPGSEEAQRLAADIESFWP 76

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSS 277
              ++             Y+P ++    +  + + ++   R     +L+  R   +VV  
Sbjct: 77  GEGID-------------YLPPSELLPLEVYTPSPELAAQRLKVLTNLVSGRTRILVVPV 123

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
              +  +   ++    +  L++G  ++++ LL  L    Y+R+++    G   V G  I+
Sbjct: 124 EDLLRKLPPPDTLRHSLQSLEVGQIIDREALLQKLTGLGYRREEVVEAPGQLAVRGGIID 183

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP   E+   R+ +FG++I+ +  F P++ + + ++  I +      + P       ++
Sbjct: 184 IFPLGAEE-PVRLELFGDEIDSLRRFDPVSQRSVADLRAIVVGPAQEVLPPPDLGP-GLE 241

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            +K E       L +  +   A+ L+ R+   + MLE             +   R     
Sbjct: 242 TLKAEFSQTYATLRQR-QPQAARELKDRVQELIAMLEAGSWPGGSSQLQPFFYPRQ---- 296

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
             TLFEY     LL +D+    + ++    +        +   G  LPS      L   +
Sbjct: 297 -ATLFEYFQRQPLLVLDDPARLLEEMRRREQQRLGIFTDMLAAGLALPSQGQAY-LDSAD 354

Query: 518 WNCL--RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
              L  R   +  S  P           +     RP   +     I + + ++  V +E+
Sbjct: 355 LERLWQRYQRLYFSLLP---------RRVPGSNPRPAVGISAQ-TIPAFQGKLGLVVEEL 404

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               ++G RI+L V        L + L E+ I     H E +            LG+ +V
Sbjct: 405 TRWRREGYRIILMVADPNRVVALRQALAEQGIEA-LTHPEARDT----------LGRGEV 453

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           ++    LR+G   PE  L  I D +  G +R 
Sbjct: 454 IMVSGRLRQGFTWPEMRLAIIGDTEIYGPIRR 485



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 7/174 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+        E V + I     +G 
Sbjct: 778 VLTMTATPIPRTLHMSLAGVRDMSMIETPPEDRFPVQTYVVEYNPELVREAIRRELDRGG 837

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++ +     +  +    ++ +     R    H ++   E   ++ D   G++DVLV   +
Sbjct: 838 QVFIVHNRVQDIDRFAYHIQQLVPEARVGIGHGQMGEEELENVMLDFISGRYDVLVSTTI 897

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  GLDI     + + ++D  G  +    L Q  GR  R        +     K
Sbjct: 898 VENGLDIQNANTLIVDESDNFGLAQ----LYQLRGRVGRTNRLAYAYFTYRPDK 947



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 50/137 (36%), Gaps = 14/137 (10%)

Query: 90  QTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHP 149
           + +   ++ +    Q L  L      +   G  + P   W           F+    Y  
Sbjct: 579 KVKSRVQEAVQEMAQELLDLYARREAIP--GHAFGPDTPWQRE--------FEEAFPYTE 628

Query: 150 SGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKIL 205
           + DQ  AIA++   +   R   +LL G  G GKT   M    +A+       V+ P  IL
Sbjct: 629 TPDQLRAIAEVKADMEKPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGMQVAVLVPTTIL 688

Query: 206 AAQLYSEFKNFFPHNAV 222
           A Q Y  FK  F    V
Sbjct: 689 AQQHYETFKARFAPFPV 705


>gi|229027900|ref|ZP_04184055.1| Transcription-repair-coupling factor [Bacillus cereus AH1271]
 gi|228733414|gb|EEL84241.1| Transcription-repair-coupling factor [Bacillus cereus AH1271]
          Length = 1176

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 103/630 (16%), Positives = 230/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  +++ +G  ++    L +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +K ++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIKRLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYN- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     +  
Sbjct: 293 ----EPASLIDYLPEDGIVVLDEISRIQETASHLETEEAEWYISLLGEGTIIQDL--SFS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FEE+   +  +  V  T     +       +  +   T        ++    Q++ + 
Sbjct: 347 HSFEEFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMQLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   RR + ++   +  
Sbjct: 946 SEVAERRLQAIKEFTELG 963



 Score = 37.8 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++ K +       +LL G  G GKT   +    +A+  ++  
Sbjct: 616 FESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQV 675

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
            ++ P  ILA Q Y   +  F  
Sbjct: 676 AILVPTTILAQQHYETIRERFQD 698


>gi|309800513|ref|ZP_07694665.1| UvrABC system protein B [Streptococcus infantis SK1302]
 gi|308115861|gb|EFO53385.1| UvrABC system protein B [Streptococcus infantis SK1302]
          Length = 181

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 95/181 (52%), Positives = 127/181 (70%), Gaps = 1/181 (0%)

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           +  A+  I+ EL+ +L   EKEG+LLEAQRL+QR  YD+EML   G    +ENYSR++ G
Sbjct: 1   MEVAIAKIEAELEEQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTNGVENYSRHMDG 60

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
           R+ GEPP TL ++ P+D L+ +DESH+T+ QI GMY GD  RK  L  YGFRLPS +DNR
Sbjct: 61  RSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNR 120

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           PLR EE+       + VSATPG +E+EQ    ++EQIIRPTGL+DP VE+R    Q++D+
Sbjct: 121 PLRREEFESHVHQIVYVSATPGDYEMEQT-DTVIEQIIRPTGLLDPEVEVRPTMGQIDDL 179

Query: 572 Y 572
           +
Sbjct: 180 F 180


>gi|167629346|ref|YP_001679845.1| transcription-repair coupling factor [Heliobacterium modesticaldum
           Ice1]
 gi|167592086|gb|ABZ83834.1| transcription-repair coupling factor [Heliobacterium modesticaldum
           Ice1]
          Length = 1247

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 80/512 (15%), Positives = 182/512 (35%), Gaps = 40/512 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q      L        + Q + G++ S +T  MA +   +  P  V+  +   A ++  +
Sbjct: 16  QTTEFQHLWSNWKRGRRQQAVFGLSASQRTALMATMARRLGHPLCVVTHSIQQARRIAED 75

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            +   P   V  F             P T+    +  + + ++   R      L  R   
Sbjct: 76  LQVLLPDEEVLSF-------------PATEVMPYEVLTSSHELLAQRLDVLSRLARREPV 122

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            VV+++  +   +      ++  ++  +G  +E   +   L    Y+R  +    G + +
Sbjct: 123 TVVTTIDALMKKLVPPAVMAEADLEFIVGCRMELSHIQERLHYLGYQRTPMVEAPGQYSL 182

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++++P     +  R+  F ++I+ I  F   T +     +          +    T
Sbjct: 183 RGGILDVYPLTRS-LPARIEFFDDEIDSIRLFDVETQRSKEKQDRYAAGPAREMLLAAET 241

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           L    + +++E       L + G    A RL+ +I   LE L+     + +E +  +   
Sbjct: 242 LAQGRRELEKEAATARERLLQSGCQEAAARLQAKIDSYLEQLDEGIWVEGLEQFQNFFYP 301

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
                   +LF Y+  ++++F DE            +        L E G  LP+  +  
Sbjct: 302 DQ-----VSLFSYLHPETIVFWDEPTRLKESAEAKEQEISETFVHLLEAGSVLPAQRNVY 356

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
               +    L    ++  A       ++ + + VE  I+          +     +++ +
Sbjct: 357 RHYNDLVEELAGHRVIHLALLA----KKIERVTVEDTIQFNAKN-----MHPFLGKLDML 407

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +E+    ++ + +L+   +    + + + L +  +  + +           I  +L  G
Sbjct: 408 AEELKNYKKRRMAVLILAASTVRRDRICDALRDYGVEAQPVPG---------IDAELHPG 458

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEG 663
              V VG+  L  G ++ +  LV I D +  G
Sbjct: 459 T--VAVGVGQLEAGFELVQARLVLITDLEIFG 488



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 65/181 (35%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  II        PV+        E + + +     +G 
Sbjct: 786 VLTLSATPIPRTLHMSLVGLRDMSIIETPPEDRYPVQTYVVEYNPELIREAVRRELNRGG 845

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   L       R    H +++  +  +++ D   G++D+LV   +
Sbjct: 846 QVYYVRNRIEDLDRIARDLGALVPDARIVVGHGKMREDQLEQVMLDFLEGEYDILVCTTI 905

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + +  AD  G  +    L Q  GR  R+       +     K +    
Sbjct: 906 IETGLDIPNVNTLIVDGADLMGLSQ----LYQLRGRVGRSNRLAYAFFTYRKDKVLTEVA 961

Query: 702 D 702
           +
Sbjct: 962 E 962


>gi|229067818|ref|ZP_04201136.1| Transcription-repair-coupling factor [Bacillus cereus F65185]
 gi|228715302|gb|EEL67160.1| Transcription-repair-coupling factor [Bacillus cereus F65185]
          Length = 1176

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 103/630 (16%), Positives = 230/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  M  + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLISGMATSSRSLLMTALYKKTKKSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAAGENGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  V++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E ++    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKENVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +++++E L   + +L  +       ++ + +++++EML+   S + +  Y       
Sbjct: 237 KSGIQHLEEGLTKTMQKLSDDKL---KTKVLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PED ++ +DE        S +   +     +L   G  +     + P
Sbjct: 293 ----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHP 348

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FE +   +  +  V  T     +       +  +   T        ++    Q+  + 
Sbjct: 349 --FEGFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMNLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEGTDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963


>gi|254672085|emb|CBA04747.1| excinuclease ABC subunit B [Neisseria meningitidis alpha275]
          Length = 198

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 106/194 (54%), Positives = 139/194 (71%), Gaps = 4/194 (2%)

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           RY+HS++ T+ER+EIIRDLR+G FDVLVGINLLREGLDIPE  LVAILDADKEGFLRS  
Sbjct: 2   RYLHSDIDTVERVEIIRDLRIGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHR 61

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           SLIQTIGRAARNVN   ILYAD IT S++ AIDET RRREKQ++ N++H I PQ +K+++
Sbjct: 62  SLIQTIGRAARNVNGVAILYADKITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQV 121

Query: 730 MEVIDPILLEDAATTNISIDAQQLSL----SKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
            ++ID +  E+ +         ++ +    +++     +  L K M  AA +L FEEAA 
Sbjct: 122 KDIIDGVYHEEDSGKGRLKGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAV 181

Query: 786 IRDEIKRLKSSPYF 799
           +RD I+ +K +  F
Sbjct: 182 LRDRIRNIKENLLF 195


>gi|295694758|ref|YP_003587996.1| transcription-repair coupling factor [Bacillus tusciae DSM 2912]
 gi|295410360|gb|ADG04852.1| transcription-repair coupling factor [Bacillus tusciae DSM 2912]
          Length = 1174

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 94/526 (17%), Positives = 194/526 (36%), Gaps = 65/526 (12%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              L++G+  R + Q + G++G+     MA +     RP +V+  N   A QLY +   F
Sbjct: 14  FRTLVEGLDERVEEQWVTGLSGTAAHVMMAALRRETGRPMLVVTHNLQEAQQLYDDCLEF 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P + V  F             P  +  +   ++ + ++   R      L +  + ++++
Sbjct: 74  LPSDRVLLF-------------PEREAALLDVAAYSPELAAERMDVLTRLAKGENILLIT 120

Query: 277 SVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
               +   +  +E +   ++ LK G+ +++ E +  L++  Y+  D    RG F V G  
Sbjct: 121 PARAVDQPLPDLEIFRSFLLSLKTGEVLKRDEWVDRLLQMGYEAADRVEARGQFAVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +++FP   ++ A+R+  F ++I+ I  F P T + +  V   +I  N+  + P+  +  A
Sbjct: 181 VDVFPL-TQERAYRIEFFDDEIDAIRVFDPETQRSVDQVPACEIGPNTEILAPKERIQAA 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
            + ++ + + +  +   EG      R    I  D+  +E       +  Y   L     G
Sbjct: 240 ARVVRSQWERQREKFADEGHRERVDRY---IGEDVRRMEAGHPFTGLLRYIHLLYPHPGG 296

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
                L  ++P ++L    E       +    R +   +    E G  LP    +RP   
Sbjct: 297 -----LLTWLPAEALCVYAEPVRIRDSLKQREREEQEWELHGLEKGELLPGL--HRP--- 346

Query: 516 EEWNCLRPTTIVVSATPGSWELE-QCQGIIVEQIIRPTGLVDPPVEI--RS---ARTQVE 569
                         A  G   L    Q ++   + R T      + +  RS      Q+ 
Sbjct: 347 --------------AITGDAGLSGHRQRVLFSLLARHTAATRRMIPVAARSMQQFHGQMN 392

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +  E +   + G R++L       AE L   L +  +         K   R +      
Sbjct: 393 VLKQEWDRWGRTGQRVVLVAANAERAERLRRVLEDYGMSADLTSEWSKQAHRPQ------ 446

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
                  + +  +  G ++P+  LV + + +      +       +
Sbjct: 447 -------IVLGGISSGFEMPDLRLVVVTEQEIF----TAKRRHHRV 481



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 78/203 (38%), Gaps = 21/203 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV---EDVY--DEINLA 578
            + ++ATP    L           +R   +++ P E R   +T V   +D+   + I   
Sbjct: 770 CLTLTATPIPRTLHMSMLG-----VRDLSIIETPPENRFPVQTYVLEYDDLLAKEAIERE 824

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +G ++       +  E + +++     + +V   H ++       ++ +   G+ DVL
Sbjct: 825 IGRGGQVYFLYNKVQDIEQMADHVRRLVPDAKVAVAHGQMPEDHLELVMLEFLHGEHDVL 884

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  GLDIP    + + DAD  G  +    L Q  GR  R+       +       
Sbjct: 885 VTTTIIETGLDIPNVNTLIVYDADHLGLSQ----LYQLRGRVGRSSRIAYAYFTYQP--- 937

Query: 697 IQLAIDETTRRREKQLEHNKKHN 719
            +  + E   +R + ++   +  
Sbjct: 938 -EKVLTEVAEKRLQAIKEFTELG 959



 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 110 IQSDNPLLKNGKIWTPHRSWSINN-HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS-R 167
           I  +   L   ++ +P  ++S +    K+   F+    Y  + DQ  AI ++ + +   R
Sbjct: 583 IAEELVKLYAQRMASPGHAFSPDTPWQKE---FEAMFPYRETPDQLKAIEEIKRDMEQPR 639

Query: 168 EKVQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFF 217
              +LL G  G GKT   M    +A+   +   V+ P  +LA Q Y  F+  F
Sbjct: 640 PMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLVPTTVLAQQHYETFRERF 692


>gi|228995444|ref|ZP_04155114.1| Transcription-repair-coupling factor [Bacillus mycoides Rock3-17]
 gi|228764305|gb|EEM13182.1| Transcription-repair-coupling factor [Bacillus mycoides Rock3-17]
          Length = 1183

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 85/552 (15%), Positives = 205/552 (37%), Gaps = 49/552 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +V+  N   A ++Y + 
Sbjct: 18  NKEIQSIINGLEEGLKEQLVSGMATSSRSLLMAALYKKTKQSQLVVTHNLFQAQKVYEDL 77

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            +      V  +             P  +    +    + ++   R      L      I
Sbjct: 78  VSLLGEQDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAMGEQGI 124

Query: 274 VVSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V  V+ +     ++  + Q  +++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 125 IVVPVAGLRRFLPIKELWKQKQIEISLGQEIDLDVLLHTLHHIGYERKSMVEAPGEFSLR 184

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E++K    + ++  +  L
Sbjct: 185 GGILDIYP-LTEELPFRIEFFDTEVDSIRSFDVEEQRSQDKRESVKFGPATEFLFSKDEL 243

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++ ++E L   + +L  +        + + +++++E+L+   + + +  Y       
Sbjct: 244 KLGVERLEEGLMKTMQKLSDDKIKTA---VLETVSHEIEILKNGQTIEQMFKYLSIFYKE 300

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
           +      +L +Y+PE+ ++ +DE        S +   +     +L   G  +   +    
Sbjct: 301 H-----ASLIDYLPENGVVILDEISRIQETASHLETEEAEWYTSLLSEGAIIQDLV--FS 353

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
            +FEE+   +  +  V  T     +       +  +   T        ++    Q++ + 
Sbjct: 354 HQFEEFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMQLLK 404

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++    +  A+ L   L + +I    + S             L  G+
Sbjct: 405 TEIDRWTEGDFTTVVLGTDEERAKKLQYILSDYDIEADIIES----------TDILLPGR 454

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 455 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVDDY 512

Query: 690 ADTITKSIQLAI 701
              +   I   +
Sbjct: 513 VVHVNHGIGKFL 524



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 781 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPGLIREAIERELARGG 840

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 841 QIYFLYNRVEDIERKADEISMLVPEARVTYAHGKMNESELESVMLSFLDGQHDVLVSTTI 900

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 901 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 952

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 953 SEVAEKRLQAIKEFTELG 970



 Score = 37.8 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++ K +       +LL G  G GKT   +    +A+  ++  
Sbjct: 623 FESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQV 682

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
            ++ P  ILA Q Y   +  F  
Sbjct: 683 AILVPTTILAQQHYETIRERFQD 705


>gi|228989261|ref|ZP_04149254.1| Transcription-repair-coupling factor [Bacillus pseudomycoides DSM
           12442]
 gi|228770471|gb|EEM19042.1| Transcription-repair-coupling factor [Bacillus pseudomycoides DSM
           12442]
          Length = 1176

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 85/552 (15%), Positives = 205/552 (37%), Gaps = 49/552 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +V+  N   A ++Y + 
Sbjct: 11  NKEIQSIINGLEEGLKEQLVSGMATSSRSLLMAALYKKTKQSQLVVTHNLFQAQKVYEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            +      V  +             P  +    +    + ++   R      L      I
Sbjct: 71  VSLLGEQDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAMGEQGI 117

Query: 274 VVSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V  V+ +     ++  + Q  +++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 118 IVVPVAGLRRFLPIKELWKQKQIEISLGQEIDLDVLLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E++K    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRSFDVEEQRSQDKRESVKFGPATEFLFSKDEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++ ++E L   + +L  +        + + +++++E+L+   + + +  Y       
Sbjct: 237 KLGVERLEEGLMKTMQKLSDDKIKTA---VLETVSHEIEILKNGQTIEQMFKYLSIFYKE 293

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
           +      +L +Y+PE+ ++ +DE        S +   +     +L   G  +   +    
Sbjct: 294 H-----ASLIDYLPENGVVILDEISRIQETASHLETEEAEWYTSLLSEGAIIQDLV--FS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
            +FEE+   +  +  V  T     +       +  +   T        ++    Q++ + 
Sbjct: 347 HQFEEFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMQLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++    +  A+ L   L + +I    + S             L  G+
Sbjct: 398 TEIDRWTEGDFTTVVLGTDEERAKKLQYILSDYDIEADIIES----------TDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVDDY 505

Query: 690 ADTITKSIQLAI 701
              +   I   +
Sbjct: 506 VVHVNHGIGKFL 517



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPGLIREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QIYFLYNRVEDIERKADEISMLVPEARVTYAHGKMNESELESVMLSFLDGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963



 Score = 37.8 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++ K +       +LL G  G GKT   +    +A+  ++  
Sbjct: 616 FESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQV 675

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
            ++ P  ILA Q Y   +  F  
Sbjct: 676 AILVPTTILAQQHYETIRERFQD 698


>gi|302388384|ref|YP_003824206.1| transcription-repair coupling factor [Clostridium saccharolyticum
           WM1]
 gi|302199012|gb|ADL06583.1| transcription-repair coupling factor [Clostridium saccharolyticum
           WM1]
          Length = 1179

 Score =  237 bits (604), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 82/510 (16%), Positives = 191/510 (37%), Gaps = 44/510 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              L   +  +    +  G   S K   M +  +  +   +V+  +   A ++Y + + F
Sbjct: 15  FEDLSSDLLKKAGPVMASGCMDSQKVHLMYEAAKQ-EGFRLVVTYDDTRAREIYEDLRFF 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P   V  +             P  D            + + R +  R L+E+    VV+
Sbjct: 74  EPD--VWLY-------------PARDLLFFSADIHGNLLTKQRMTVFRQLMEKTSGWVVT 118

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +   +   +  ++   + ++ ++ G +++ +E    L++  Y+R       G F + G  
Sbjct: 119 TFDGLMDHLLPLKYLKEQVLSVEGGQTIDVEEWKKRLIELGYERMGQVDGMGQFSIRGGI 178

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I++FP   E++  R+ ++ ++++ I  F   + + I  +E+I+IY  +        +   
Sbjct: 179 IDVFPL-TEELPVRIELWDDEVDSIRTFDIESQRSIEQLESIRIYPATEMALTGAQIEEG 237

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ +++E K    +L  + ++ E+ R+   ++  LE L+       ++ Y  Y       
Sbjct: 238 IRVLEKEAKKYEKDLRAQSKIQESSRIRSIVSEFLEGLKDGFRQHGLDGYIHYFC----- 292

Query: 456 EPPPTLFEYI-PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
           +   +  EY   E+S++F+DE      +   +            E G+ LP       L 
Sbjct: 293 QESVSFLEYFHGENSVVFLDEPERLREKGETVEMEFRESMIHRLENGYLLPGQT---GLL 349

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYD 573
           F     L       +      E +     +              V+ + + +   E +  
Sbjct: 350 FSAKEMLARVQTKSTVYLTGLEQKLSGFTVK-------NRYSFQVKNVNTYQNGFELLIK 402

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++    ++G R++L   ++  A  L   L E ++R           +     ++++ G+ 
Sbjct: 403 DLTRWKKEGYRVILLSASRTRASRLAGDLREYDLRAYC-------PDEGGESQEVKPGE- 454

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEG 663
            +LV    L  G +      + I + D  G
Sbjct: 455 -ILVTFGNLHRGFEYSMIKFIVITEGDMFG 483



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 18/192 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +  +    L +PPV+    +T V     E V + I+   
Sbjct: 781 VLTLTATPIPRTLHMSLVGIRDMSV----LEEPPVDRMPIQTYVMEYNDEMVREAIHREL 836

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++          +++  ++          + H ++   E   I+ D   G+ DVLV
Sbjct: 837 SRGGQVYYVYNRVSNIDEVANHISGLVPEAAVTFAHGQMHEHELERIMFDFVNGEIDVLV 896

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DAD  G L     L   +GR++R   + ++   D + K  
Sbjct: 897 CTTIIETGLDIPNANTMIIQDADHMG-LSQLYQLRGRVGRSSRTSYAFLMYKRDKLLK-- 953

Query: 698 QLAIDETTRRRE 709
               +E  +R +
Sbjct: 954 ----EEAEKRLQ 961


>gi|304405853|ref|ZP_07387511.1| transcription-repair coupling factor [Paenibacillus curdlanolyticus
           YK9]
 gi|304345096|gb|EFM10932.1| transcription-repair coupling factor [Paenibacillus curdlanolyticus
           YK9]
          Length = 1177

 Score =  236 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 91/522 (17%), Positives = 189/522 (36%), Gaps = 71/522 (13%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             +L G+ +  + QL+ G+ GS +   ++ +   + RP +V+  N   A ++  + +   
Sbjct: 15  QTVLTGVTAGMREQLISGLAGSSRQVLVSALRSDLDRPMLVVTHNMFAAQKIAEDLQELL 74

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
             + V  +             P  +    + +  + +    R  A   L +    IVV  
Sbjct: 75  SPSEVLLY-------------PANELVAAEAAVSSPETLAQRIDALIRLSQGFRGIVVVP 121

Query: 278 VSCIYGIGSVE-SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
            S +     V+   +   + LK+G+S+  +  L  +    Y+R D    +G   V G  +
Sbjct: 122 FSGVRRYVPVKGVMADAQISLKVGESLPMETFLRRMTGIGYERVDRVESKGEMSVRGGIV 181

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           + +P     VA RV  F  +I+ I  F     + +  ++   +               A 
Sbjct: 182 DFYP-LTSPVACRVEWFDEEIDSIRTFDASDQRSLEKLDAFVVTPCRELPADERRFKNAA 240

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           ++ ++ L  +L ++         +RL+  I  ++E L        +  Y   L       
Sbjct: 241 QHAQDLLDKQLEKMADR---TAKERLKGEIGSEIEKLREEQYFSEMYKYVSLLYPER--- 294

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TL +Y+P+D+LL +DE    I     + R +      L  +G  LPS     PL  E
Sbjct: 295 --HTLLDYLPQDTLLILDEPLRLIETARQLERDEAEWATHLLSHGKSLPS----LPLARE 348

Query: 517 EWNCLRP---TTIVVSATPGSWELEQCQGIIVEQI--IRPTGLVDPPVE-IRSARTQVED 570
               +      TI +S             + + QI   +P  +++      ++   Q+  
Sbjct: 349 TDEIMHHRAYQTIFLS-------------LFLRQIPHTQPQNILNFMCRATQNFHGQMNV 395

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  E++   + G  +++   +    + +   L++  I       E  +L           
Sbjct: 396 LKSEMDRWKKAGATVMMLAGSAERMDRMRRVLHDYGI-------EPPSLIE--------- 439

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
                      L+ G ++P   LV I + +     + K + +
Sbjct: 440 ---------GNLQAGFELPSIHLVVITEGEMFSQKQRKATRV 472



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + +     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEYSAALVRESVERELARGG 821

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +    + + +     + RV   H ++   E  + I D   G+ DVLV  ++
Sbjct: 822 QVYYLYNRVQGIHQMADQIKALVPDARVAVGHGQMSEQELEKTILDFLDGESDVLVSTSI 881

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DIP    + + DADK G L     L   +GR+ R   +      D +   +  
Sbjct: 882 IETGVDIPNVNTLIVHDADKMG-LSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAE 938


>gi|261403915|ref|YP_003240156.1| transcription-repair coupling factor [Paenibacillus sp. Y412MC10]
 gi|261280378|gb|ACX62349.1| transcription-repair coupling factor [Paenibacillus sp. Y412MC10]
          Length = 1175

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 174/475 (36%), Gaps = 50/475 (10%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I  F   +D+            +  G+H+  + QL+ G++GS +   MA + +  QRP +
Sbjct: 6   IDVFSKDSDFK----------SITSGVHAGMREQLISGLSGSSRQILMAALHQDQQRPLL 55

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+  N   A ++  + +     + V  +             P  +    + +  + +   
Sbjct: 56  VVTHNMFSAQKIADDLQEALSSDQVLLY-------------PANELVAAESAVSSPETLA 102

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            R             IVV+  S +  +    E  S   + L  G ++     L+ +++  
Sbjct: 103 QRIDVLVRCARGFRGIVVAPFSGVRRLLPAPEVMSDARIVLHDGGTLVLDAFLNRMIEMG 162

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R +    RG   V G  I+ +P     +A+RV +F  DI+ I  F P   + I  V  
Sbjct: 163 YERVERVERRGEMSVRGGIIDFYPMTTA-MAYRVELFDEDIDSIRTFDPTDQRSIDKVRE 221

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           + I      +     L+   + +   L+ +L  +      L   RL   I  ++EML   
Sbjct: 222 VMITPCKEIIADAERLSRTAETVVRLLEAQLERMSDRQAKL---RLRDEIHREVEMLRER 278

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
                I  Y   L           L++Y+P+D++L +DE    +     + R +      
Sbjct: 279 IYFPEIYKYISLLYPEK-----TNLYDYMPKDTILIMDEPARLLETAKQLERDEAEWNLH 333

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR--PTGL 554
           L + G  LP    + PL  +    L       S             I + Q+ R  P  +
Sbjct: 334 LMQNGKSLP----DLPLSLDT-EELIYQHPYQSLMI---------SIFLRQVPRMQPQNI 379

Query: 555 VDPPVE-IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           V+     ++    Q+  +  E+    + G+++++        + +   L +  I 
Sbjct: 380 VNVITRGMQDFHGQMNVLKAEMERWKKSGVQVMMLAGDAERMDRMRRVLQDYGIE 434



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 763 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIERELARGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  +++   +       R    H ++   E  + I D   G++DVLV  ++
Sbjct: 823 QVYYLYNRVQGIQEMAAQISMLVPEARVGVGHGQMSETELEKTILDFLDGEYDVLVSTSI 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DIP    + + DADK G L     L   +GR+ R   +      D +   +  
Sbjct: 883 IETGVDIPNVNTLIVHDADKMG-LSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAE 939


>gi|328551756|gb|AEB22248.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
           TA208]
          Length = 1177

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 95/520 (18%), Positives = 188/520 (36%), Gaps = 46/520 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              ++ G+H   K QLL G++GS ++   + + +  +RP   +  N   A ++  +    
Sbjct: 14  FKSIVNGLHEGLKEQLLAGLSGSARSVFTSALAQETKRPIFFITHNLYQAQKVTEDLTAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
               +V  +             P  +    + +  + ++   R      L      +VV+
Sbjct: 74  LGDQSVFLY-------------PVNELISSEIAVASPELRAQRLDVINRLTNGEAPVVVA 120

Query: 277 SVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +   +  +    + + +GD +E  +L + LV+  Y+R D+    G F + G  
Sbjct: 121 PVAAVRRMLPPKELWKSSQIVISLGDDIEPDQLSARLVEVGYERSDMVSAPGEFSIRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E    R+ +F  +++ I  F     + I  ++T+ I      +        A
Sbjct: 181 IDIYPLTSE-HPVRIELFDTEVDSIRSFNSDDQRSIETLKTVAIGPAKELIIRAEEKARA 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           M  + + L      L+K  +  + + L   I++D E L T  + Q +  Y  Y       
Sbjct: 240 MDRLDKGLA---DSLKKLKQDKQKEMLHINISHDKERLSTGQTDQELVKYLSYFY----- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E P +L +Y P D+LL +DE          + + +     +L E G  L     +   + 
Sbjct: 292 EKPASLLDYTPSDTLLVLDEVSRIHEMEDQLQKEEAEFTTSLLEEGKILHDINLSFSFQE 351

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                 RP             L   Q    + I+  T        +++   Q+  +  E+
Sbjct: 352 LMGQKRRPAIYFSLF------LRHVQHTSPQNIVNVTSRQ-----MQNFHGQMNVLTGEM 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    ++     K   + L   L +  I      S           + L  G+  V
Sbjct: 401 ERFKKSNFTVVFLGANKDRTDRLASVLADYEIEAAKTDSS----------KALVQGQ--V 448

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            V    L+ G ++P   L  I + +       K    Q +
Sbjct: 449 YVMEGELQSGFELPLMKLAVITEEELFKNRIKKKPRKQKL 488



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +     + +V Y H ++   E   ++ +   G+ DVLV   +
Sbjct: 834 QVYFLYNRVDDIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + D DK G  +    L Q  GR  R+       +     K +    
Sbjct: 894 IETGVDIPNVNTLIVFDGDKMGLSQ----LYQLRGRVGRSNRVAYAYFTYRRDKVLTEVA 949

Query: 702 D 702
           +
Sbjct: 950 E 950


>gi|308171946|ref|YP_003918651.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
           DSM 7]
 gi|307604810|emb|CBI41181.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
           DSM 7]
 gi|328910016|gb|AEB61612.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
           LL3]
          Length = 1177

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 95/520 (18%), Positives = 188/520 (36%), Gaps = 46/520 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              ++ G+H   K QLL G++GS ++   + + +  +RP   +  N   A ++  +    
Sbjct: 14  FKSIVNGLHEGLKEQLLAGLSGSARSVFTSALAQETKRPIFFITHNLYQAQKVTEDLTAL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
               +V  +             P  +    + +  + ++   R      L      +VV+
Sbjct: 74  LGDQSVFLY-------------PVNELISSEIAVASPELRAQRLDVINRLTNGEAPVVVA 120

Query: 277 SVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +   +  +    + + +GD +E  +L + LV+  Y+R D+    G F + G  
Sbjct: 121 PVAAVRRMLPPKELWKSSQIVISLGDDIEPDQLSARLVEVGYERSDMVSAPGEFSIRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E    R+ +F  +++ I  F     + I  ++T+ I      +        A
Sbjct: 181 IDIYPLTSE-HPVRIELFDTEVDSIRSFNSDDQRSIETLKTVAIGPAKELIIRAEEKARA 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           M  + + L      L+K  +  + + L   I++D E L T  + Q +  Y  Y       
Sbjct: 240 MDRLDKGLA---DSLKKLKQDKQKEMLHINISHDKERLSTGQTDQELVKYLSYFY----- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E P +L +Y P D+LL +DE          + + +     +L E G  L     +   + 
Sbjct: 292 EKPASLLDYTPSDTLLVLDEVSRIHEMEDQLQKEEAEFTTSLLEEGKILHDINLSFSFQE 351

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                 RP             L   Q    + I+  T        +++   Q+  +  E+
Sbjct: 352 LMGQKRRPAIYFSLF------LRHVQHTSPQNIVNVTSRQ-----MQNFHGQMNVLTGEM 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    ++     K   + L   L +  I      S           + L  G+  V
Sbjct: 401 ERFKKSNFTVVFLGANKDRTDRLASVLADYEIEAAKTDSS----------KALVQGQ--V 448

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            V    L+ G ++P   L  I + +       K    Q +
Sbjct: 449 YVMEGELQSGFELPLMKLAVITEEELFKNRIKKKPRKQKL 488



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +     + +V Y H ++   E   ++ +   G+ DVLV   +
Sbjct: 834 QVYFLYNRVDDIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + D DK G  +    L Q  GR  R+       +     K +    
Sbjct: 894 IETGVDIPNVNTLIVFDGDKMGLSQ----LYQLRGRVGRSNRVAYAYFTYRRDKVLTEVA 949

Query: 702 D 702
           +
Sbjct: 950 E 950


>gi|315644370|ref|ZP_07897510.1| transcription-repair coupling factor [Paenibacillus vortex V453]
 gi|315280247|gb|EFU43539.1| transcription-repair coupling factor [Paenibacillus vortex V453]
          Length = 1175

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/475 (18%), Positives = 173/475 (36%), Gaps = 50/475 (10%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I  F   +D+            +  G+++  + QL+ G++GS +   MA + +  QRP +
Sbjct: 6   IDVFSKDSDFK----------SITAGVNAGMREQLISGLSGSSRQILMAALHQDQQRPLL 55

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+  N   A ++  + +     + V  +             P  +    + +  + +   
Sbjct: 56  VVTHNMFSAQKIADDLQEALSSDQVLLY-------------PANELVAAESAVSSPETLA 102

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            R             IVV+  S +  +    E  S   + L  G ++     L+ +V+  
Sbjct: 103 QRIDVLVRCARGFRGIVVAPFSGVRRLLPAPEVMSDARIVLHDGGTLVLDSFLNRMVEMG 162

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R +    RG   V G  I+ +P     +A+R+ +F  DI+ I  F P+  + I  V  
Sbjct: 163 YERVERVESRGEMSVRGGIIDFYPMTT-TMAYRIELFDEDIDSIRTFDPIDQRSIDKVRE 221

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           + I      +     L+     +   L+ +L  +      L   RL   I  ++EML   
Sbjct: 222 VVITPCKEIIADSERLSRTADTVVRLLEAQLERMSDRQAKL---RLRDEIHREVEMLRER 278

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
                +  Y   L           L++Y+P+D++L +DE    +     + R +      
Sbjct: 279 IYFPELYKYISLLYPEK-----TNLYDYMPKDTILIMDEPARLLETAKQLERDEAEWNLH 333

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR--PTGL 554
           L + G  LP      PL  +    L       S             I + Q+ R  P  +
Sbjct: 334 LMQNGKSLP----ELPLSLDT-EELIYQHPYQSLLI---------SIFLRQVPRMQPQNI 379

Query: 555 VDPPVE-IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           ++     ++    Q+  +  E+    + G+++++        + +   L +  I 
Sbjct: 380 INVITRGMQDFHGQMNVLKAEMERWKKSGVQVMMLAGDAERMDRMRRVLQDYGID 434



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 763 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIERELARGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  +++   +       R    H ++   E  + I D   G++DVLV  ++
Sbjct: 823 QVYYLYNRVQGIQEMAAQISMLVPEARVGVGHGQMSETELEKTILDFLDGEYDVLVSTSI 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DIP    + + DADK G L     L   +GR+ R   +      D +   +  
Sbjct: 883 IETGVDIPNVNTLIVHDADKMG-LSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAE 939


>gi|138893727|ref|YP_001124180.1| transcription-repair coupling factor [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265240|gb|ABO65435.1| Transcription-repair coupling factor [Geobacillus
           thermodenitrificans NG80-2]
          Length = 1177

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 92/553 (16%), Positives = 191/553 (34%), Gaps = 55/553 (9%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              +  +++GIH R K QL+ G++GS ++  ++ + +   RP +V+A N   A ++Y + 
Sbjct: 11  NQDVRTIIEGIHVRLKEQLVAGLSGSARSVFISTLYKETGRPMLVVAHNLFQAQKIYDDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            +    + V  +                +    + +  + ++   R        +    +
Sbjct: 71  VSLLGPDDVFLYS-------------VNEVIAAEMAVASPELKAQRLEIMNHWAQEGKGV 117

Query: 274 VVSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           VV  V+ +  +    S +   +    +G  ++ +      V+  YKR       G F + 
Sbjct: 118 VVCPVAGLRRLLPPLSLWKHYLFTFSVGQELDLERYKQLFVEMGYKRVATVSAPGEFSIR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E + +R+ +F  +IE I  F P   +    V+ + I      +      
Sbjct: 178 GGIVDIYPLTAE-LPYRIELFDTEIESIRTFTPDDQRSHEQVDRVMIGPADEIILNEEAR 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++ I+  L   L  ++ +      QR+ + I  +LE L      +    Y       
Sbjct: 237 QRGIERIEAGLAASLENIKDDA---AKQRMYEHIHAELEQLREGQEIEQQYKYMSLFY-- 291

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   +L +Y+PED +L +DE          + R +     +L + G      + + P
Sbjct: 292 ---EKAASLLDYLPEDGVLLMDEMSRLQEAAERLDREEAEWYTSLLDGG----KMIHDVP 344

Query: 513 LRFEEWNCL---RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           +       L   R   + +S       L        + ++  T        +++   Q+ 
Sbjct: 345 ISHSFSELLQKSRFQRVYLS-----LFLRHAPHTHPQNVVNITCKQ-----MQNFHGQMA 394

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +  EI    +    ++         + L   L +  I    +  E   L          
Sbjct: 395 LLQSEIERWKKANYAVVFLAPDAERVKKLQSLLEDYEIDALPLPHEAALLH--------- 445

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKV 686
            GK  +L     L  G ++P   L  I + +       +    Q +    R       +V
Sbjct: 446 -GKCQLL--QGDLNTGFELPLQKLAVITEEELFKKRAKRPVRRQKLSNAERIKSYAELQV 502

Query: 687 ILYADTITKSIQL 699
             Y   +   I  
Sbjct: 503 GDYVVHVNHGIGK 515



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 75/200 (37%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II        PV+        E V + I     +  
Sbjct: 774 VLTLTATPIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEYTPELVKEAIERELARDG 833

Query: 584 RILLTVLTKRM----AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++             AE++ + + E   RV + H  +   E    I     G++DVLV  
Sbjct: 834 QVFFLYNHIEDIDLRAEEIAQLVPEA--RVTFAHGRMSEAELESTILAFLEGQYDVLVTT 891

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G  +    L Q  GR  R+       +     K    
Sbjct: 892 TIIETGVDIPNVNTLIVYDADRMGLSQ----LYQLRGRVGRSNRVAYAYFTYRKDK---- 943

Query: 700 AIDETTRRREKQLEHNKKHN 719
            ++ET  +R + ++   +  
Sbjct: 944 VLNETAEKRLQAIKEFTELG 963


>gi|229009563|ref|ZP_04166790.1| Transcription-repair-coupling factor [Bacillus mycoides DSM 2048]
 gi|228751707|gb|EEM01506.1| Transcription-repair-coupling factor [Bacillus mycoides DSM 2048]
          Length = 1176

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 101/630 (16%), Positives = 230/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKQSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEVGVASPELKAQRIEVLNRLATGENGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  +++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E++K    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVKFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +K+++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIKHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PE+ ++ +DE        S +   +     +L   G  +     +  
Sbjct: 293 ----EPASLIDYLPENGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDL--SFS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FEE+   +  +  V  T     +       +  +   T        ++    Q+  + 
Sbjct: 347 HSFEEFLHNKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMHLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGNFTTVVLGTDDERVKKLQHILSDYDIDA-----DI-----VEATDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P    V I + +       K+   Q +    R       KV  +
Sbjct: 448 LQIAV--GDLHAGFEMPMQKFVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDH 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           + +   L     K     + K +   AD+L
Sbjct: 562 EPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   RR + ++   +  
Sbjct: 946 SEVAERRLQAIKEFTELG 963


>gi|329925538|ref|ZP_08280412.1| transcription-repair coupling factor [Paenibacillus sp. HGF5]
 gi|328939821|gb|EGG36161.1| transcription-repair coupling factor [Paenibacillus sp. HGF5]
          Length = 1175

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 173/475 (36%), Gaps = 50/475 (10%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           I  F   +D+            +  G+H+  + QL+ G++GS +   MA + +  QRP +
Sbjct: 6   IDVFSKDSDFK----------SITSGVHAGMREQLISGLSGSSRQILMAALHQDQQRPLL 55

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+  N   A ++  + +     + V  +             P  +    + +  + +   
Sbjct: 56  VVTHNMFSAQKIADDLQEALSSDQVLLY-------------PANELVAAESAVSSPETLA 102

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            R             IVV+  S +  +    E  S   + L  G ++     L+ +++  
Sbjct: 103 QRIDVLVRCARGFRGIVVAPFSGVRRLLPAPEVMSDARIVLHDGGTLVLDAFLNRMIEMG 162

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R +    RG   V G  I+ +P     +A+RV +F  DI+ I  F P   + I  V  
Sbjct: 163 YERVERVERRGEMSVRGGIIDFYPMTTA-MAYRVELFDEDIDSIRTFDPTDQRSIDKVRE 221

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           + I      +     L+     +   L+ +L  +      L   RL   I  ++EML   
Sbjct: 222 VMITPCKEIIADAERLSRTADTVVRLLEAQLERMSDRQAKL---RLRDEIHREVEMLRER 278

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
                I  Y   L           L++Y+P+D++L +DE    +     + R +      
Sbjct: 279 IYFPEIYKYISLLYPEK-----TNLYDYMPKDTILIMDEPARLLETAKQLERDEAEWNLH 333

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR--PTGL 554
           L + G  LP    + PL  +    L       S             I + Q+ R  P  +
Sbjct: 334 LMQNGKSLP----DLPLSLDT-EELIYQHPYQSLMI---------SIFLRQVPRMQPQNI 379

Query: 555 VDPPVE-IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           V+     ++    Q+  +  E+    + G+++++        + +   L +  I 
Sbjct: 380 VNVITRGMQDFHGQMNVLKAEMERWKKSGVQVMMLAGDAERMDRMRRVLQDYGIE 434



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 763 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIERELARGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  +++   +       R    H ++   E  + I D   G++DVLV  ++
Sbjct: 823 QVYYLYNRVQGIQEMAAQISMLVPEARVGVGHGQMSETELEKTILDFLDGEYDVLVSTSI 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DIP    + + DADK G L     L   +GR+ R   +      D +   +  
Sbjct: 883 IETGVDIPNVNTLIVHDADKMG-LSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAE 939


>gi|294496926|ref|YP_003560626.1| transcription-repair coupling factor [Bacillus megaterium QM B1551]
 gi|294346863|gb|ADE67192.1| transcription-repair coupling factor [Bacillus megaterium QM B1551]
          Length = 1176

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/515 (16%), Positives = 179/515 (34%), Gaps = 64/515 (12%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++  +    K QL+ G++GS ++  MA + E  + P +V+  N   A ++Y + 
Sbjct: 11  NKEIGAVVSSLEEGLKEQLVTGISGSARSVLMALLNEDKKYPLLVVTHNLYQAQKVYEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            +  P   V  +             P  D    +    + ++   R        +    +
Sbjct: 71  LHLLPEKDVFLY-------------PVNDLVATEVGIASPELKAQRIEVLNYWSQHTGGV 117

Query: 274 VVSSVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           VV+ ++ I  +   ++  +      ++G  ++    L  LV+  Y+R  +    G F V 
Sbjct: 118 VVTPLAGIRKLLPPKARWEQTQLPFQMGIDIDVDHYLKRLVELGYERASMVSAPGEFSVR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  I+I+P   E++  R+ +F  +I+ I  F     +    ++ I I   +  +  R  +
Sbjct: 178 GGIIDIYP-LTEELPVRIELFDTEIDSIRTFTIEDQRSQEQLKEISIGPATEIIVNRNEV 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++ ++ +L   L +++          L + I  ++E L      +++  Y  +    
Sbjct: 237 AQGIEELEAQLASTLQQVKNAAL---KATLTENIKGEIEQLRQGQLLENMFKYLSFFY-- 291

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG---------FR 503
              E P +L +Y+PE  L+  DE+         +   +      L   G          +
Sbjct: 292 ---ESPASLLDYLPEGGLVIFDETTRIQETSDQLETEEAEWITELLGQGQIVRDVQLSHK 348

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           LPS +     +F   +         S       +       ++Q                
Sbjct: 349 LPSLIQRAKHQFLYLSLFLKHVSYTS----PQNIINISCKQMQQFY-------------- 390

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q+  + +EI         ++L    K   + L   L + +I    +           
Sbjct: 391 --GQMNLLKNEIERWKNANYTVVLLGADKERVKKLEGVLADYDIDSSILDGN-------- 440

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
               L  G   ++     L+ G ++P   L  + +
Sbjct: 441 --GQLVPGLVQII--EGDLQMGFELPMQKLAVLTE 471



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +  
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPVLVREAIERELARDG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   E +       R  Y H ++   E   +I     G++DV+V   +
Sbjct: 834 QVYFLYNRVEDIERKAEEISMLVPDARVTYAHGKMNETELEAVILSFLEGEYDVIVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-- 699
           +  G+DIP    + + +ADK G L     L   +GR+ R   +    + D +   +    
Sbjct: 894 IETGVDIPNVNTLIVNNADKMG-LSQLYQLRGRVGRSNRVAYAYFTYHKDKVLTEVAEKR 952

Query: 700 --AIDE 703
             AI E
Sbjct: 953 LQAIKE 958


>gi|226309690|ref|YP_002769584.1| transcription-repair coupling factor [Brevibacillus brevis NBRC
           100599]
 gi|226092638|dbj|BAH41080.1| transcription-repair coupling factor [Brevibacillus brevis NBRC
           100599]
          Length = 1182

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 85/524 (16%), Positives = 197/524 (37%), Gaps = 45/524 (8%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +  ++ G+      QL+ G+ GS +   MA + +   RP  V+  N   A ++Y +
Sbjct: 10  QDTNVGTIVAGLEKGLHEQLVSGLAGSARQVLMASLQQMADRPVCVVTHNMYQAQKVYED 69

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                P + V  +             P  +    + +  + ++   R      L +    
Sbjct: 70  LIELVPSDQVLLY-------------PGNELIGSELAIASPEMLAQRIHVFNRLAQGFTG 116

Query: 273 IVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V+  + +  +    + + +  +QL +G+ ++ +  L   ++  Y+R D+   +G   +
Sbjct: 117 FLVAPFAGLRRLVVPPQVWKEAQIQLSVGNELDIESFLLRCIELGYERVDMVERKGEMSI 176

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I+++P   E    R+ +F  +I+ I  F  L+ + + +V+T  +      +   P 
Sbjct: 177 RGGIIDLYPIDSE-WPVRIELFDVEIDSIRTFDMLSQRSLESVQTYILGPAKEMIASTPL 235

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           L  +   ++++L   L  L+        +++ +RI  D E ++       + +Y   +  
Sbjct: 236 LQESAVRLEQKLGETLANLKDGA---AKEKVMERIGSDAERMKQGQRFAQLYSYISVIYP 292

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
                   TL  Y+P D+LL VDE    +   + + + +          G  + +   +R
Sbjct: 293 TG-----DTLLSYMPSDTLLLVDEPSRVLDTAAQLQKEEGEWLTGRIIQGEYMSNLSLSR 347

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
               E  +  +   + +S       L Q      + I+  T        +++   Q+  +
Sbjct: 348 TYD-EIVSTKKRQIVYLS-----LFLRQSPKTQPQNIVNLTCR-----TMQNFHGQMNVL 396

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             E+    +   +I+        A+ L   L++  +    +   V+T+            
Sbjct: 397 KTELARWKKSQDQIVFVAADLERAKRLERVLHDYEMEADVLTEAVETVPPGRP------- 449

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
                + +  L+ G ++P   LV I + +     + K   +Q  
Sbjct: 450 ----TIILGNLQTGFELPLNKLVVITEGEVFTAKQRKARKVQQT 489



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 72/191 (37%), Gaps = 18/191 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVED-----VYDEINLA 578
            + ++ATP    L           +R   +++ P E R   +T V D     V + I   
Sbjct: 776 VMTLTATPIPRTLHMSMLG-----VRDLSVIETPPENRFPVQTYVMDYSPALVREAIERE 830

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVL 636
             +  ++       +  E + E +       R    H ++   E   +I D   G FDVL
Sbjct: 831 MARDGQVFFLYNQVQGIEQMAEQISMLVPDARIAVAHGQMNESELEGVILDFLEGNFDVL 890

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  G+DIP    + I +ADK G L     L   +GR+ R   +      D +   
Sbjct: 891 VSTTIIETGVDIPNVNTLIIYNADKMG-LSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTE 949

Query: 697 IQL----AIDE 703
           +      AI E
Sbjct: 950 VAEKRLQAIKE 960


>gi|229083372|ref|ZP_04215723.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-44]
 gi|228699937|gb|EEL52571.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-44]
          Length = 1176

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 99/630 (15%), Positives = 229/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +V+  N   A ++Y + 
Sbjct: 11  NKEIQSIINGLEEGLKEQLVSGMATSSRSLLMAALYKKTKQSQLVVTHNLFQAQKVYEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            +      V  +             P  +    +    + ++   R      L      I
Sbjct: 71  VSLLGEQDVWLY-------------PVNELIASEIGVASPELKAQRIEVLNRLAMGEQGI 117

Query: 274 VVSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V  V+ +     ++  + Q  +++ +G  ++ + LL +L    Y+R+ +    G F + 
Sbjct: 118 IVVPVAGLRRFLPIKELWKQKQIEISLGQEIDLEALLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     ++++    + ++     L
Sbjct: 178 GGILDIYPL-TEELPFRIEFFDTEVDSIRLFDVGEQRSQDKKDSVRFGPATEFLFSNEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++ ++E L   +  L  +        + + +++++E+L+   + + +  Y       
Sbjct: 237 KLGVERLEEGLMKTMQRLSDDKIKTA---VLETVSHEIEVLKNGQTIEQMFKYLSIFYKE 293

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
           +      +L +Y+PE+ ++ +DE        + +   +     +L   G  +   +    
Sbjct: 294 H-----ASLIDYLPENGVVILDEISRIQETAAHLETEEAEWYTSLLSDGAIIQDLV--FS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
            +FEE+   +  +  V  T     +       +  +   T        ++    Q++ + 
Sbjct: 347 HQFEEFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMQLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++    +  A+ L   L + +I    + S             L  G+
Sbjct: 398 TEIDRWTEGNFTTVVLGTDEERAKKLQYILSDYDIEADIIES----------TDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P   LV I + +       K+   Q +    R       KV  Y
Sbjct: 448 LQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDY 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           D +   L     K     + K +   AD+L
Sbjct: 562 DPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPGLIREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QIYFLYNRVEDIERKADEISMLVPEARVTYAHGKMNEGELESVMLSFLDGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 SEVAEKRLQAIKEFTELG 963



 Score = 37.8 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++ K +       +LL G  G GKT   +    +A+  ++  
Sbjct: 616 FESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQV 675

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
            ++ P  ILA Q Y   +  F  
Sbjct: 676 AILVPTTILAQQHYETIRERFQD 698


>gi|205371994|ref|ZP_03224812.1| transcription-repair coupling factor [Bacillus coahuilensis m4-4]
          Length = 1181

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 103/552 (18%), Positives = 199/552 (36%), Gaps = 58/552 (10%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +  ++ GI      QL+ G++GSG++  +A V +   R  +V+  N   A +L  +    
Sbjct: 11  VQSIVSGIQEGLHEQLIAGLSGSGRSLFIASVFKDTNRQTVVVTHNLFQAQKLQEDLIAL 70

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
               +V  +             P  +    + S  + ++   R      +   +  I + 
Sbjct: 71  LGEESVYLY-------------PANELIAAELSISSPELKAQRIDTLYHMASGHKGIYIV 117

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            ++ I  +   +   +M    L +G+ +    LL+SLV+  Y R D+    G F V G  
Sbjct: 118 PMAGIRKLLPPKKEWEMFQITLTVGEDINVSSLLTSLVQTGYTRADMVSAPGEFSVRGGI 177

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P    D   R+ +F  +++ I  F     + I  ++T+ I   +  V     +   
Sbjct: 178 IDIYPLTSTD-PVRIELFDTEVDSIRTFSAEDQRSIDKLQTVLIPPATELVLTSQDIARL 236

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              +  EL + L +L+        ++L Q I YDLE L        +  YS         
Sbjct: 237 GDKLATELALSLKKLKSTK---AKEKLSQNIGYDLERLRNGQLPDDLFKYSSLAY----- 288

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E P +L +Y+  + ++  DE          + + +     +L E G  + +   +  L  
Sbjct: 289 EEPSSLLDYVASNGIVIFDEYSRIGEINQSLEKEEGEWFTSLLEEGKIVHNVTISYSL-- 346

Query: 516 EEWNCLRPTT-IVVSATPGSWELEQCQGIIVEQIIR--PTGLVDPPVE-IRSARTQVEDV 571
           E+   L   T I +S             + +  I +  P  +V+   + +++   Q+   
Sbjct: 347 EKVKALCEQTKIYMS-------------LFMRSIPQSSPENIVNLSCKPMQNFHGQMHVF 393

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             EI    + G  +LL + TK     +   L E  I    +                + G
Sbjct: 394 KAEIERWKKTGTAVLLLIPTKERQTKVQRMLEEYEIHTTVLSEN----------EAFQYG 443

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEG-FLRSKTSLIQTIG---RAARNVNSKVI 687
              ++     L  G ++P   L  I + +      +   +  Q +    R       KV 
Sbjct: 444 IAQLV--EGSLHSGFELPLQKLAVITEEELFNKKTKKAPARRQKLSNAERIKSYSELKVG 501

Query: 688 LYADTITKSIQL 699
            Y   +   I  
Sbjct: 502 DYVVHVNHGIGK 513



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 59/174 (33%), Gaps = 7/174 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +  
Sbjct: 772 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEYNGALVREAIERELAREG 831

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H  +   E   +I     G+ DVLV   +
Sbjct: 832 QVFFLYNRVEDIERKADEIAMLVPEARVVYAHGRMTENELESVILSFLEGEADVLVTTTI 891

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +     K
Sbjct: 892 IETGVDIPNANTLIVHDADRMGLSQ----LYQLRGRVGRSNRVAYAYFTYRKDK 941


>gi|229053900|ref|ZP_04195335.1| Transcription-repair-coupling factor [Bacillus cereus AH603]
 gi|228721441|gb|EEL72961.1| Transcription-repair-coupling factor [Bacillus cereus AH603]
          Length = 1176

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 100/630 (15%), Positives = 230/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKQSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEVGVASPELKAQRIEVLNRLAAGENGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  +++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F  +++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +K+++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIKHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PE+ ++ +DE        S +   +     +L   G  +     +  
Sbjct: 293 ----EPASLIDYLPENGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDL--SFS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FEE+   +  +  V  T     +       +  +   T        ++    Q+  + 
Sbjct: 347 HSFEEFLHNKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMHLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGNFTTVVLGTDDERVKKLQHILSDYDIDA-----DI-----VEATDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P    V I + +       K+   Q +    R       KV  +
Sbjct: 448 LQIAV--GDLHAGFEMPMQKFVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDH 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           + +   L     K     + K +   AD+L
Sbjct: 562 EPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   RR + ++   +  
Sbjct: 946 SEVAERRLQAIKEFTELG 963


>gi|295090936|emb|CBK77043.1| transcription-repair coupling factor [Clostridium cf.
           saccharolyticum K10]
          Length = 1185

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 86/512 (16%), Positives = 195/512 (38%), Gaps = 50/512 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             ++ + +   +    + G   S K   +++   +++   +++  +   A ++Y +++ F
Sbjct: 15  FQEMNRDLEQGKGPLQVSGCVDSQKVHLISETAGSLRWK-LIVTYDDSRAREIYEDYRTF 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P  AV  +             P  D            + R R    + L+E     +V+
Sbjct: 74  DP--AVFLY-------------PAKDLLFYSSDIHGNLLTRQRMQVFKHLMEDEAGTIVT 118

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +V  +   +  +       + +  G+S++ +E+  +L    Y+R       G F V G  
Sbjct: 119 TVDGLMDRLLPLSEIRNSRIAVVSGESLKTEEMKEALAGLGYERVGQVDGMGQFSVRGGI 178

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+IFP   E++  R+ ++G++++ I  F P + + +  +E ++I   +  +  +  +   
Sbjct: 179 IDIFPL-TEELPVRIELWGDEVDSIRSFDPESQRSVEELERVEICPATELLLEKSRVEKG 237

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +  I++E+K     L  + +  EA R+E  +    E +        +  + +Y       
Sbjct: 238 LSKIEKEMKKYGKALRDQMKNEEAHRIEGLVRELSEEIREGFKVHGLGGFIQYFA----- 292

Query: 456 EPPPTLFEYIPE-DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
           E   +  EY P+ +  +F+DE      +   +        A   E G+ LP   D     
Sbjct: 293 EKTVSFLEYFPKEELAVFLDEPLRIREKAEAVELEFRESMAHRLEGGYLLPGQTD----- 347

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR---SARTQVEDV 571
                  + T  ++S   GS  L      + +++   +      +E +   S +   E +
Sbjct: 348 --FLYSAKATAAMMS---GSHTLLVSG--LDQRMTGFSVKKKYSIEAKSMGSYQNGFEML 400

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             ++    ++  R +L   ++  A  L   L E  ++  Y+  E            ++ G
Sbjct: 401 IKDLTRWQKEKYRTVLLTGSRTRASRLAGDLREYGLKA-YLPDEDGG--------QVKAG 451

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +  ++V    L  G + P      I + D  G
Sbjct: 452 E--IMVTYGNLHRGFEYPLLKFAVITEGDMFG 481



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 18/192 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            I ++ATP    L      I +  +    L +PPV+    +T V     E V + IN   
Sbjct: 780 VITLTATPIPRTLHMSLIGIRDMSV----LEEPPVDRLPIQTYVMEYNDEMVREAINREV 835

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++          E++  ++     + +V + H +++  E   I+ D   G  DVLV
Sbjct: 836 ARGGQVYYVYNRVNNIEEIANHVASLVPDAQVTFAHGQMREHELERIMLDFVNGDIDVLV 895

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GL+IP    + I DAD+ G  +    L Q  GR  R+  +          K +
Sbjct: 896 STTIIETGLNIPNANTIIIHDADRLGLSQ----LYQIRGRVGRSSRTSYAFLMYRRDKLL 951

Query: 698 QLAIDETTRRRE 709
           +   +E  +R +
Sbjct: 952 R---EEAEKRLQ 960



 Score = 37.8 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 81/231 (35%), Gaps = 29/231 (12%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A Q+G +++  V T    ++      + + +  +RV  +       E+
Sbjct: 662 GKTEIALRAAFKAIQEGKQVVYLVPTTILAQQHYNTFVQRMKDFPVRVDMLSRFRTPAEQ 721

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              + DL+ G  DVL+G + +L + ++    GL+ I +  + G    +      I +   
Sbjct: 722 KRTLEDLKKGFVDVLIGTHRVLSKDVEFKSLGLLIIDEEQRFGVAHKE-----KIKKLKE 776

Query: 681 NVN---------SKVILYADTITKSIQLAIDETTRRREKQ---LEHNKKHNINPQSVKEK 728
           NV+          + +  +    + + +  +    R   Q   +E+N +  +  +++  +
Sbjct: 777 NVDVITLTATPIPRTLHMSLIGIRDMSVLEEPPVDRLPIQTYVMEYNDE--MVREAINRE 834

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
           +        + +       I     SL      A +     QM      L 
Sbjct: 835 VARGGQVYYVYNRVNNIEEIANHVASLVPD---AQVTFAHGQMREH--ELE 880


>gi|295702293|ref|YP_003595368.1| transcription-repair coupling factor [Bacillus megaterium DSM 319]
 gi|294799952|gb|ADF37018.1| transcription-repair coupling factor [Bacillus megaterium DSM 319]
          Length = 1176

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 82/515 (15%), Positives = 178/515 (34%), Gaps = 64/515 (12%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++  +    K QL+ G++GS ++  MA + E  + P +V+  N   A ++Y + 
Sbjct: 11  NKEIGAVVSSLEEGLKEQLVTGISGSARSVLMALLNEDKKYPLLVVTHNLYQAQKVYEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            +  P   V  +             P  D    +    + ++   R        +    +
Sbjct: 71  LHLLPEKDVFLY-------------PVNDLVATEVGIASPELKAQRIEVLNYWSQHTGGV 117

Query: 274 VVSSVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           VV+ ++ I  +   ++  +      ++G  ++    L  LV+  Y+R  +    G F V 
Sbjct: 118 VVTPLAGIRKLLPPKARWEQTQLPFQMGIDIDVDHYLKRLVELGYERASMVSAPGEFSVR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  I+I+P   E++  R+ +F  +I+ I  F     +    ++ I I   +  +  +  +
Sbjct: 178 GGIIDIYP-LTEELPVRIELFDTEIDSIRTFTIEDQRSQEQLKEISIGPATEIIVNQNEV 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++ ++ +L   L +++          L + I  ++E L      +++  Y  +    
Sbjct: 237 AQGIEELEAQLASTLQQVKNAAL---KATLTENIKGEIEQLRQGQLLENMFKYLSFFY-- 291

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG---------FR 503
              E P +L +Y+PE  L+  DE+         +   +      L   G          +
Sbjct: 292 ---ESPASLLDYLPEGGLVIFDETTRIQETSDQLETEEAEWITELLGQGQIVRDVQLSHK 348

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           LPS +     +F   +         S       +       ++Q                
Sbjct: 349 LPSLIQRVKHQFLYLSLFLKHVSYTS----PQNIINISCKQMQQFY-------------- 390

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q+  +  EI         ++L    K   + L   L + +I    +           
Sbjct: 391 --GQMNLLKSEIERWKNANYTVVLLGADKERVKKLEGVLADYDIDSSILDGN-------- 440

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
               L  G   ++     L+ G ++P   L  + +
Sbjct: 441 --GQLVPGLVQII--EGDLQMGFELPMQKLAVLTE 471



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +  
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPVLVREAIERELARDG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   E +       R  Y H ++   E   +I     G++DV+V   +
Sbjct: 834 QVYFLYNRVEDIERKAEEISMLVPDARVTYAHGKMNETELEAVILSFLEGEYDVIVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-- 699
           +  G+DIP    + + +ADK G L     L   +GR+ R   +    + D +   +    
Sbjct: 894 IETGVDIPNVNTLIVNNADKMG-LSQLYQLRGRVGRSNRVAYAYFTYHKDKVLTEVAEKR 952

Query: 700 --AIDE 703
             AI E
Sbjct: 953 LQAIKE 958


>gi|291087006|ref|ZP_06345122.2| transcription-repair coupling factor [Clostridium sp. M62/1]
 gi|291076614|gb|EFE13978.1| transcription-repair coupling factor [Clostridium sp. M62/1]
          Length = 1187

 Score =  234 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 86/512 (16%), Positives = 195/512 (38%), Gaps = 50/512 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             ++ + +   +    + G   S K   +++   +++   +++  +   A ++Y +++ F
Sbjct: 17  FQEMNRDLEQGKGPLQVSGCVDSQKVHLISETAGSLRWK-LIVTYDDSRAREIYEDYRTF 75

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P  AV  +             P  D            + R R    + L+E     +V+
Sbjct: 76  DP--AVFLY-------------PAKDLLFYSSDIHGNLLTRQRMQVFKHLMEDEAGTIVT 120

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +V  +   +  +       + +  G+S++ +E+  +L    Y+R       G F V G  
Sbjct: 121 TVDGLMDRLLPLSEIRNSRIAVVSGESLKTEEMKEALAGLGYERVGQVDGMGQFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+IFP   E++  R+ ++G++++ I  F P + + +  +E ++I   +  +  +  +   
Sbjct: 181 IDIFPL-TEELPVRIELWGDEVDSIRSFDPESQRSVEELERVEICPATELLLEKSRVEKG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +  I++E+K     L  + +  EA R+E  +    E +        +  + +Y       
Sbjct: 240 LSKIEKEMKKYGKALRDQMKNEEAHRIEGLVRELSEEIREGFKVHGLGGFIQYFA----- 294

Query: 456 EPPPTLFEYIPE-DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
           E   +  EY P+ +  +F+DE      +   +        A   E G+ LP   D     
Sbjct: 295 EKTVSFLEYFPKEELAVFLDEPLRIREKAEAVELEFRESMAHRLEGGYLLPGQTD----- 349

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR---SARTQVEDV 571
                  + T  ++S   GS  L      + +++   +      +E +   S +   E +
Sbjct: 350 --FLYSAKATAAMMS---GSHTLLVSG--LDQRMTGFSVKKKYSIEAKSMGSYQNGFEML 402

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             ++    ++  R +L   ++  A  L   L E  ++  Y+  E            ++ G
Sbjct: 403 IKDLTRWQKEKYRTVLLTGSRTRASRLAGDLREYGLKA-YLPDEDGG--------QVKAG 453

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +  ++V    L  G + P      I + D  G
Sbjct: 454 E--IMVTYGNLHRGFEYPLLKFAVITEGDMFG 483



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 18/192 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            I ++ATP    L      I +  +    L +PPV+    +T V     E V + IN   
Sbjct: 782 VITLTATPIPRTLHMSLIGIRDMSV----LEEPPVDRLPIQTYVMEYNDEMVREAINREV 837

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++          E++  ++     + +V + H +++  E   I+ D   G  DVLV
Sbjct: 838 ARGGQVYYVYNRVNNIEEIANHVASLVPDAQVTFAHGQMREHELERIMLDFVNGDIDVLV 897

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GL+IP    + I DAD+ G  +    L Q  GR  R+  +          K +
Sbjct: 898 STTIIETGLNIPNANTIIIHDADRLGLSQ----LYQIRGRVGRSSRTSYAFLMYRRDKLL 953

Query: 698 QLAIDETTRRRE 709
           +   +E  +R +
Sbjct: 954 R---EEAEKRLQ 962



 Score = 37.4 bits (85), Expect = 9.5,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 81/231 (35%), Gaps = 29/231 (12%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A Q+G +++  V T    ++      + + +  +RV  +       E+
Sbjct: 664 GKTEIALRAAFKAIQEGKQVVYLVPTTILAQQHYNTFVQRMKDFPVRVDMLSRFRTPAEQ 723

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              + DL+ G  DVL+G + +L + ++    GL+ I +  + G    +      I +   
Sbjct: 724 KRTLEDLKKGFVDVLIGTHRVLSKDVEFKSLGLLIIDEEQRFGVAHKE-----KIKKLKE 778

Query: 681 NVN---------SKVILYADTITKSIQLAIDETTRRREKQ---LEHNKKHNINPQSVKEK 728
           NV+          + +  +    + + +  +    R   Q   +E+N +  +  +++  +
Sbjct: 779 NVDVITLTATPIPRTLHMSLIGIRDMSVLEEPPVDRLPIQTYVMEYNDE--MVREAINRE 836

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
           +        + +       I     SL      A +     QM      L 
Sbjct: 837 VARGGQVYYVYNRVNNIEEIANHVASLVPD---AQVTFAHGQMREH--ELE 882


>gi|311028986|ref|ZP_07707076.1| transcription-repair coupling factor [Bacillus sp. m3-13]
 gi|311032274|ref|ZP_07710364.1| transcription-repair coupling factor [Bacillus sp. m3-13]
          Length = 1178

 Score =  234 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 88/554 (15%), Positives = 205/554 (37%), Gaps = 63/554 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              +L G+    + QL+ G++ S ++  +A + E  + P +++  N   A ++Y +  +F
Sbjct: 14  FQSVLVGLQEGLQEQLISGISNSARSMLIAALYEERKAPILLITHNLFHAQKVYDDLASF 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P + +  +             P  D    +    + ++   R  A      +N+ I+++
Sbjct: 74  LPEDQLYLY-------------PVNDVLAAEIGIASPELKAQRVEALNHWATKNNGIIIA 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            ++ +   + S E + Q ++ +++  ++E   L   LV+  Y+R  +    G F + G  
Sbjct: 121 PIAGLKRILPSKEKWQQTLLTIEVEKTLELDNLAERLVRFGYQRVGMVATPGDFSIRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+ A R+ +F +++E I  F     +  +++  + I   +  +     L   
Sbjct: 181 IDIYPI-TEEYAIRIELFDDEVESIRYFTVEDQRSQKHMVMVTIGPATEMLLTDQELANG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
            + +++EL   + +++ +      Q L + I+Y+LE +        +  Y  +       
Sbjct: 240 REVLEKELAKTIKKMKNDKV---KQLLTENISYELEQIRNGQVFSELYKYLSFFY----- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +L +YIP   ++ +DE          + + +      L   G    +  D      
Sbjct: 292 SSPASLLDYIPRGGIVIMDEISRVHETAESLDKEEAEWLVELLAEG---KAVHD------ 342

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS-----ARTQVED 570
            +++      +     P  +       + +  +  P    +  + + S        Q+  
Sbjct: 343 LKFSHSFAQIVHSKKQPFLY-----LSLFLRAV--PHTHPENLINMSSKSMQHFHGQMHL 395

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  EI    +    I++    +   E L     +  + +R +                  
Sbjct: 396 LKSEIERWRKANYAIVVLASNQERMEKLETVFADYEMDIRKLS----------KGSAFAH 445

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-------NVN 683
           G+  ++     L+ G ++P   L  I + +       K    Q +  A R       NV 
Sbjct: 446 GEVQLV--EGDLQSGFELPMQKLAVITEEELFKKKAKKPKNRQKLSNAERIKNYTELNVG 503

Query: 684 SKVILYADTITKSI 697
             V+     I K +
Sbjct: 504 DYVVHINHGIGKYL 517



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 69/198 (34%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGNLVKEAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ +VLV   +
Sbjct: 834 QIYFLYNRVEDIERKADEISMLVPEARVTYAHGKMTENELESVMIQFLEGEAEVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +     K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFTYRKDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 946 TEVAEKRLQSIKEFTELG 963


>gi|196250768|ref|ZP_03149455.1| transcription-repair coupling factor [Geobacillus sp. G11MC16]
 gi|196209718|gb|EDY04490.1| transcription-repair coupling factor [Geobacillus sp. G11MC16]
          Length = 1177

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 89/553 (16%), Positives = 189/553 (34%), Gaps = 55/553 (9%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              +  +++GIH+R K QL+ G++GS ++  ++ + +   RP +V+A N   A ++Y + 
Sbjct: 11  NQDVRTIIEGIHARLKEQLVAGLSGSARSVFISTLYKETGRPMLVVAHNLFQAQKIYDDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            +    + V  +                +    + +  + ++   R        +    +
Sbjct: 71  VSLLGSDDVFLYS-------------VNEVIAAEMAVASPELKAQRLEIMNHWAQEGKGV 117

Query: 274 VVSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           VV  V+ +  +    S +   +    +G  ++ +      V+  YKR       G F + 
Sbjct: 118 VVCPVAGLRRLLPPLSLWKHYLFTFSVGQELDLERYKQLFVEMGYKRVATVSAPGEFSIR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E + +R+ +F  +IE I  F P   +    V+ + I      +      
Sbjct: 178 GGIVDIYPLTAE-LPYRIELFDTEIESIRTFTPDDQRSHEQVDRVMIGPADEIILNEEAR 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++ I+  L   L  ++ +      QR+ + I  +LE L      +    Y       
Sbjct: 237 QRGIERIEAGLAASLENIKDDA---AKQRMYEHIHAELEQLREGQEIEQQYKYMSLFY-- 291

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   +L +Y+PED +L +DE          + R +     +L + G      + + P
Sbjct: 292 ---EKAASLLDYLPEDGVLLMDEMSRLQEAAERLDREEAEWYTSLLDGG----KMIHDVP 344

Query: 513 LRFEEWNCL---RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           +       L   R   + +S       L        + ++  T        +++   Q+ 
Sbjct: 345 ISHSFSELLQKSRFQRVYLS-----LFLRHAPHTHPQNVVNITCKQ-----MQNFHGQMA 394

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +  EI    +    ++         + L   L +  I    +  E   L     +    
Sbjct: 395 LLQSEIERWKKANYAVVFLAPDAERVKKLQSLLEDYEIDALPLPHEAALLHSKCQLLQ-- 452

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKV 686
                       L  G ++P   L  I + +       +    Q +    R       +V
Sbjct: 453 ----------GDLNTGFELPLQKLAVITEEELFKKRAKRPVRRQKLSNAERIKSYAELQV 502

Query: 687 ILYADTITKSIQL 699
             Y   +   I  
Sbjct: 503 GDYVVHVNHGIGK 515



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 75/200 (37%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II        PV+        E V + I     +  
Sbjct: 774 VLTLTATPIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEYTPELVKEAIERELARDG 833

Query: 584 RILLTVLTKRM----AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++             AE++ + + E   RV + H  +   E    I     G++DVLV  
Sbjct: 834 QVFFLYNHIEDIDLRAEEIAQLVPEA--RVTFAHGRMSEAELESTILAFLEGQYDVLVTT 891

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G  +    L Q  GR  R+       +     K    
Sbjct: 892 TIIETGVDIPNVNTLIVYDADRMGLSQ----LYQLRGRVGRSNRVAYAYFTYRKDK---- 943

Query: 700 AIDETTRRREKQLEHNKKHN 719
            ++ET  +R + ++   +  
Sbjct: 944 VLNETAEKRLQAIKEFTELG 963


>gi|163938061|ref|YP_001642945.1| transcription-repair coupling factor [Bacillus weihenstephanensis
           KBAB4]
 gi|163860258|gb|ABY41317.1| transcription-repair coupling factor [Bacillus weihenstephanensis
           KBAB4]
          Length = 1176

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 100/630 (15%), Positives = 229/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKQSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEVGVASPELKAQRIEVLNRLAAGENGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  +++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGDFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F   ++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTQVDSIRLFDVEEQRSQDKRESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +K+++E L   + +L  +        + + +++++EML+   S + +  Y       
Sbjct: 237 KSGIKHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PE+ ++ +DE        S +   +     +L   G  +     +  
Sbjct: 293 ----EPASLIDYLPENGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDL--SFS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FEE+   +  +  V  T     +       +  +   T        ++    Q+  + 
Sbjct: 347 HSFEEFLHNKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMHLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGNFTTVVLGTDDERVKKLQHILSDYDIDA-----DI-----VEATDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P    V I + +       K+   Q +    R       KV  +
Sbjct: 448 LQIAV--GDLHAGFEMPMQKFVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDH 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           + +   L     K     + K +   AD+L
Sbjct: 562 EPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   RR + ++   +  
Sbjct: 946 SEVAERRLQAIKEFTELG 963


>gi|229131061|ref|ZP_04259974.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST196]
 gi|229165042|ref|ZP_04292838.1| Transcription-repair-coupling factor [Bacillus cereus AH621]
 gi|228618427|gb|EEK75456.1| Transcription-repair-coupling factor [Bacillus cereus AH621]
 gi|228652398|gb|EEL08322.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST196]
          Length = 1176

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 101/630 (16%), Positives = 229/630 (36%), Gaps = 54/630 (8%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              I  ++ G+    K QL+ G+  S ++  MA + +  ++  +++  N   A +++ + 
Sbjct: 11  NEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKQSQLIVTHNLYQAQKVHEDL 70

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   V  +             P  +    +    + ++   R      L    + I
Sbjct: 71  VALLGEKDVWLY-------------PVNELIASEVGVASPELKAQRIEVLNRLAAGENGI 117

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V+ V+ +   +   E + Q  +++ +G  ++   LL +L    Y+R+ +    G F + 
Sbjct: 118 IVAPVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGDFSLR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++I+P   E++ +R+  F   ++ I  F     +     E+++    + ++  +  L
Sbjct: 178 GGILDIYP-LTEELPFRIEFFDTQVDSIRLFDVEEQRSQDKRESVRFGPATEFLFSQEEL 236

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + +K+++E L   + +L  +        + + ++++LEML+   S + +  Y       
Sbjct: 237 KSGIKHLEEGLTKTMQKLSDDKLKTT---VLETVSHELEMLKNGQSIEQMFKYLSIFYK- 292

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P +L +Y+PE+ ++ +DE        S +   +     +L   G  +     +  
Sbjct: 293 ----EPASLIDYLPENGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDL--SFS 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             FEE+   +  +  V  T     +       +  +   T        ++    Q+  + 
Sbjct: 347 HSFEEFLHNKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDFHGQMHLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI+   +     ++        + L   L + +I       ++     +E    L  G+
Sbjct: 398 TEIDRWNEGNFTTVVLGTDDERVKKLQHILSDYDIDA-----DI-----VEATDILLPGR 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILY 689
             + V    L  G ++P    V I + +       K+   Q +    R       KV  +
Sbjct: 448 LQIAV--GDLHAGFEMPMQKFVVITEKELFHKKVKKSQRKQKLSNAERIKSYSELKVGDH 505

Query: 690 ADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +   I   +  ET    E    H    NI  Q   +K+   I+ I        +   
Sbjct: 506 VVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQKYVGSEGK 561

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           + +   L     K     + K +   AD+L
Sbjct: 562 EPKVYKLGGNDWKKVKTKVEKSVQDIADDL 591



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 834 QIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 894 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            E   RR + ++   +  
Sbjct: 946 SEVAERRLQAIKEFTELG 963


>gi|15667436|dbj|BAB68219.1| putative excinuclease ABC B subunits [Enterococcus faecium]
          Length = 194

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 94/193 (48%), Positives = 133/193 (68%)

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           YVP +DTYIEK+SS+N++ID++RHSAT SLLERND IV++SVSCI+G+GS   Y + +V 
Sbjct: 1   YVPSSDTYIEKDSSVNDEIDKLRHSATSSLLERNDVIVIASVSCIFGLGSPFEYQKQVVS 60

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           ++ G  +++ +L+  LV  Q++R DI   RG FRV GD +EIFP+  ++ A RV  FG++
Sbjct: 61  IRQGAELDRNQLIRDLVSIQFERNDIDFQRGRFRVRGDVVEIFPASRDERALRVEFFGDE 120

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           +E I E   LTG+ +   E + I+  +H+VT    +  A+  IK EL+ RL  L  E +L
Sbjct: 121 VERIREVNALTGEVLGETEHVAIFPATHFVTNDEHMEHAVANIKAELEQRLTVLRNENKL 180

Query: 417 LEAQRLEQRITYD 429
           LEAQRLEQR  YD
Sbjct: 181 LEAQRLEQRTNYD 193


>gi|317126795|ref|YP_004093077.1| transcription-repair coupling factor [Bacillus cellulosilyticus DSM
           2522]
 gi|315471743|gb|ADU28346.1| transcription-repair coupling factor [Bacillus cellulosilyticus DSM
           2522]
          Length = 1185

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 84/552 (15%), Positives = 204/552 (36%), Gaps = 59/552 (10%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +  +++G+ +    Q++ G+ GS ++  +A + E  +R  +V+  N   A +LY +  + 
Sbjct: 14  VKSIVEGVEANISEQMVSGLAGSARSLLLATIFEKTKRSQLVITHNLFQAQKLYDDLTSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + V  +             P  +    + +  + ++   R  A    +   D IV++
Sbjct: 74  IGEDQVYLY-------------PVNELIASEIAVASPEMKGQRMEALNQWISNKDAIVIA 120

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            ++ +  +   +S         ++G  +E    L+ LV   ++R D+    G F V G  
Sbjct: 121 PMAGVRRLLPPKSLWFEFQLSFQVGKDIELNTTLNQLVNMGFQRVDMVSTPGQFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ I  F   +      ++ + I      +         
Sbjct: 181 IDIYP-LTEENPVRIELFDTEVDSIRFFNVESQLSETQLQVVNIGPAKEVLLKEEHYQHG 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              +++ L   L +++ +      +++ +++ +++ +L+   S  S+  Y          
Sbjct: 240 ASSLEQALATSLKKVKNKAV---KEKMAEQVGHEIRLLKEKTSFDSMYKYMSLFY----- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           +   TL +Y+P + L+F+DE          + + +     T+   G    + + +  L  
Sbjct: 292 DTRYTLLDYMPNNGLIFIDEVSRVQEMAKSLEKEEADWHTTMISQG----ASVSDIALAL 347

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI--IRPTGLVDPPVE-IRSARTQVEDVY 572
             W+ L     +    P  +       + +  +    P  LV    + +++   Q+  + 
Sbjct: 348 S-WDELFHHCTI----PRVY-----LSLFLRHVPSTNPKNLVSIQTKTMQNFHGQIHLLK 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +E++        I         A+ +   L + +I       +   +          LG+
Sbjct: 398 NEVDRWKGANYSITFVCADNERADRMKSVLEDYDIESVVTSHDSPPV----------LGQ 447

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-------NVNSK 685
             ++     L  G ++P   L+ I + +       +    Q +  A R        V   
Sbjct: 448 TQII--TGHLMSGFELPMQRLIIITEEEVFTKKTKRPKRRQKLSNAERIKSYSELQVGDW 505

Query: 686 VILYADTITKSI 697
           V+     I K +
Sbjct: 506 VVHINHGIGKYL 517



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNEGLVKEAIERELARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E + + +        VR++H  +   E   ++ +   G  DVLV   +
Sbjct: 834 QVFYLYNRVDDIEVVNDKISMLVPEANVRFVHGRMTESELESVMLEFLDGNVDVLVTTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-- 699
           +  G+DIP    + I +ADK G L     L   +GR+ R   +      D +   +    
Sbjct: 894 IETGVDIPNVNTLIIDNADKMG-LSQLYQLRGRVGRSNRVAYAYFTHQRDKVLTEVAEKR 952

Query: 700 --AIDE 703
             AI E
Sbjct: 953 LQAIKE 958



 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 4/113 (3%)

Query: 114 NPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQL 172
           + L+K        + ++ +    +   F+    Y  + DQ  AI ++ K +   R   +L
Sbjct: 589 DDLIKLYAEREASKGFAFSKDGPEQREFESSFPYQETEDQIRAIEEIKKDMELERPMDRL 648

Query: 173 LLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           L G  G GKT   +    +A+   +    + P  ILA Q Y   +  F   AV
Sbjct: 649 LCGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHYETIRERFQDFAV 701


>gi|300813350|ref|ZP_07093701.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300512493|gb|EFK39642.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 208

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 109/195 (55%), Positives = 147/195 (75%), Gaps = 1/195 (0%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           MAEDLT++  E  I+  YMHS+V+TLER++II+DLR  K DVLVGINLLREGLD+PE  L
Sbjct: 1   MAEDLTKHFKEIGIKATYMHSDVETLERMQIIKDLRQAKIDVLVGINLLREGLDMPEVSL 60

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           VAILDADKEGFLRS+TSLIQT GRAARNV+ KVI+YAD IT+S++  IDET RRR+ Q  
Sbjct: 61  VAILDADKEGFLRSRTSLIQTAGRAARNVSGKVIMYADNITESMKETIDETNRRRKIQDA 120

Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
           +NK+H I P+S+ + I +V++  L  ++  +    D +    +K + +A + +L+ QM+ 
Sbjct: 121 YNKEHGIVPKSIIKDIRDVLNTTLAAESDVSFKEEDFEDE-FTKDEIQAMIDALKPQMYE 179

Query: 774 AADNLNFEEAARIRD 788
           AA+ L+FE+AA IRD
Sbjct: 180 AAEALDFEKAAEIRD 194


>gi|330980693|gb|EGH78796.1| excinuclease ABC subunit B [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 169

 Score =  233 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 103/169 (60%), Positives = 139/169 (82%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           ++ FQ+ T + P+GDQP AI QL++GI +    Q LLGVTGSGKTF++A VI  ++RP +
Sbjct: 1   MSEFQLVTRFEPAGDQPEAIRQLVEGIDAGLAPQTLLGVTGSGKTFSIANVISQIKRPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+APNK LAAQLY EFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++SIN+ I++
Sbjct: 61  VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           MR SAT++LLER D I+V++VSCIYG+GS E+Y +M++ +  GD ++Q+
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQR 169


>gi|15612632|ref|NP_240935.1| transcription-repair coupling factor (TRCF) [Bacillus halodurans
           C-125]
 gi|10172681|dbj|BAB03788.1| transcription-repair coupling factor (TRCF) [Bacillus halodurans
           C-125]
          Length = 1181

 Score =  233 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 88/529 (16%), Positives = 195/529 (36%), Gaps = 49/529 (9%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             +++G+    K QL+ G++GS +   MA + +  +RP +V+  N   A +++ +     
Sbjct: 15  QAIVQGLEVNMKEQLVSGLSGSARPAVMAALYKETRRPQLVITYNLYQAQKIFEDLVELV 74

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
             + V  +             P  D    + +  + ++   R      L+     IVV  
Sbjct: 75  GADHVLLY-------------PVNDLISSEIAIASPEMKAQRIDVLNQLVAGFSGIVVVP 121

Query: 278 VSCIYGIGSVES-YSQMIVQLKIGDSV-EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           ++ +  +    S + +  ++L +GD + + + L+  LV+  + R D+    G   V G  
Sbjct: 122 LAGMRRLLPPSSLWKESQIRLSVGDDIGDLESLIRRLVRNGFTRVDMVTTPGECSVRGGI 181

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+++P   E+   R+ +F  +I+ I  F     +   ++  + I   +  +         
Sbjct: 182 IDLYP-LTEEDPIRIELFDTEIDSIRTFTIEDQRSKDSLSEVVIGPAAEIIMDEEHFIQG 240

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              +++ L   L   +K  +    ++L ++I++D+  L+      S+  Y          
Sbjct: 241 ASRLEDRLSQTL---KKVKKKEVKEKLTEQISFDISELKQKHPFPSMYKYISLFY----- 292

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           +   +LF Y+P + ++FVDE          + + +     TL E G      + +  L  
Sbjct: 293 DDTYSLFSYVPSNGVIFVDEMSRVKEMSESLEKEEAEWHTTLIEQGEI----VHDVTLAH 348

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDE 574
                ++   +     P  +       +       P  ++    + +++   Q+  +  E
Sbjct: 349 SVLEQMKQGVL-----PIVY---LSLFVRHVPSTNPQNIISFQCKSMQNFHGQMPLLQSE 400

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +          +    T+  A+ L   L E  I    +  E            L  G+  
Sbjct: 401 VKRWISSQFATVFIAATRERAKRLNHVLAEEGIEALVVDGEAP----------LTPGQAQ 450

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++V    L  G ++    LV I + +       +    Q +  A R  N
Sbjct: 451 IMV--GALTSGFELTLHKLVVITEEEIFAKKVKRPQRKQKLSNAERIKN 497



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 69/198 (34%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 775 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNSPLVREAIERELSRGG 834

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E +   +       R  + H ++K  E   I+     G+ DVLV   +
Sbjct: 835 QVYFLYNRVENIERMANEISMLVPDARVSFAHGQMKESELESIMLAFLEGESDVLVTTTI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I  ADK G  +    L Q  GR  R+       +     K     +
Sbjct: 895 IETGVDIPNVNTLIIHGADKMGLSQ----LYQIRGRVGRSNRVAYAYFTYQRDK----VL 946

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 947 SEVAEKRLQAIKEFTELG 964



 Score = 38.5 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 99  MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158
           +   VQ+    I  D   L   +  +   +++ +   +    F+    Y  + DQ  AI 
Sbjct: 577 VKRRVQSSVEDIADDLIKLYAEREASKGFAFAPDGPEQ--AEFEASFPYQETEDQLRAIQ 634

Query: 159 QLLKGIH-SREKVQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFK 214
           ++ + +   R   +LL G  G GKT   +    +A+   +   ++ P  ILA Q +   +
Sbjct: 635 EIKEDMEKERPMDRLLCGDVGYGKTEVAIRAAFKAIMNGKQVAILVPTTILAQQHFETIQ 694

Query: 215 NFFPH 219
             F  
Sbjct: 695 ERFAD 699


>gi|154483284|ref|ZP_02025732.1| hypothetical protein EUBVEN_00985 [Eubacterium ventriosum ATCC
           27560]
 gi|149735794|gb|EDM51680.1| hypothetical protein EUBVEN_00985 [Eubacterium ventriosum ATCC
           27560]
          Length = 1168

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 100/517 (19%), Positives = 195/517 (37%), Gaps = 55/517 (10%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q     Q+   +   +  Q + G   S     +  +     +  +++  +   A+QLY +
Sbjct: 10  QLNEFEQVKVCLSEHKSCQ-VTGCGESQLAHFINGLSNGY-KQKVIVTFSATKASQLYQD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            K  F  + V Y              P  D            I + R    + ++E    
Sbjct: 68  LKG-FADDVVMY--------------PAKDFIFFSADVHGNLILQQRLEFIQKIVEDKPF 112

Query: 273 IVV-SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            V+ +  + +  I  +E      +++  G  ++   L S LV+  Y+        G F V
Sbjct: 113 TVILTPDAFMDKIMPIEKIKNNYLEIAEGSIIQMDALKSKLVQMGYEPVVQIDGPGQFAV 172

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++I+ +  ++V +R+  + ++++ I  F   + + I N+E++KIY  S Y   +  
Sbjct: 173 RGSIVDIY-TLTDEVPYRIDFWDDEVDIIKSFEVESQRSIENLESVKIYPASEYSLTKKE 231

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           +   M  I+++L   + +  K+ +  EA RL   +   L  ++   S  ++++Y  Y   
Sbjct: 232 IQAGMAKIRQDLDQNVEKFRKDFKTEEANRLRVTVEEFLTNMDINPSQVAVDSYVNYFY- 290

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               +   +L +Y  E+ + F+DE      Q++ +        A   + G+ LP   D  
Sbjct: 291 ----DNLVSLLDYF-ENPIFFIDEPKRVTEQLNVVDAEFGDSMANRLQKGYVLPGQTDV- 344

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-----IRSART 566
                 W+  +   I           E+     + Q I+    VD  VE     +     
Sbjct: 345 -----IWD--KNQIIA-----KIDSGEKVLFTAIAQKIQGFS-VDDFVEVGSRNVSPYNG 391

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + E +  ++    +Q   +LL   +K   + L E L E  I   +           +  R
Sbjct: 392 KFEILVQDLKKYKEQKYAVLLVTGSKTRGQRLAEDLREFEISAFF---------EEDGER 442

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            +  G+  V++    LR G   P    VAI D D  G
Sbjct: 443 QVMPGE--VMIIKGQLRSGFMYPMIKFVAISDTDIFG 477



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 71/185 (38%), Gaps = 15/185 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +       + +PP E    +T V     E   D IN   
Sbjct: 774 VMTLTATPIPRTLHMSLIGIRDM----CVMEEPPQERMPIQTFVMEYNEEIARDAINREL 829

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++       +   ++   +     +  V + H ++   +  EI+ D   G  DVLV
Sbjct: 830 ARGGQVYYVYNRVQDIAEMAGKVQALVPDASVAFAHGQMSERQLEEIMYDFVNGDIDVLV 889

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA+K G  +    L Q  GR  R+  +       +  K +
Sbjct: 890 TTTIIETGLDIPNANTIIIHDAEKMGLSQ----LYQLRGRVGRSNRTSYAFLMYSRNKML 945

Query: 698 QLAID 702
               +
Sbjct: 946 TEVAE 950


>gi|329577443|gb|EGG58892.1| conserved domain protein [Enterococcus faecalis TX1467]
          Length = 542

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLA- 261

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 262 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 314

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 315 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 373

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 374 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 422

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 423 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 469

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 470 PKNKLVAITEKEIFHTTTKKRARRQTI 496


>gi|229825975|ref|ZP_04452044.1| hypothetical protein GCWU000182_01339 [Abiotrophia defectiva ATCC
           49176]
 gi|229789717|gb|EEP25831.1| hypothetical protein GCWU000182_01339 [Abiotrophia defectiva ATCC
           49176]
          Length = 1184

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 93/511 (18%), Positives = 191/511 (37%), Gaps = 43/511 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM-QRPAIVMAPNKILAAQLYSEF 213
             I + +  I+  +   L+ G   + K+  +  + +   +R  +++  ++I A ++ ++ 
Sbjct: 12  KEINEAINHINKGKLPILITGCMDAEKSNIIETLSKGTSKRHRVIITYDEIRAGEIQTDM 71

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           K  +   AV Y              P  D            I   R    + L+E     
Sbjct: 72  K-LYDKKAVIY--------------PAKDIMFFAADVHGNAIISGRLEVLKRLIEDKPST 116

Query: 274 VV-SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++ S  + +  +  +    + IV+L + DS +  EL   L +  Y++      +G F V 
Sbjct: 117 IILSLEAGLDRVLPLSYVKEKIVKLSVRDSFDITELARRLSELGYEKTSQVSGKGQFAVR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD  +IFP   E+  +R+  +G++I+ I  F   + + I NVE + +Y  +  +      
Sbjct: 177 GDIFDIFPL-TEETPFRLEFWGDEIDTIRAFDVESQRSIENVEELLVYPATEIIIDEERK 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              +K + +E +    +   E +  EA R+   +    + LE  G    I++Y  Y    
Sbjct: 236 LAGLKKLNKEKEEVYKKFRAEMKTEEAARINSVVEEFKDNLEIYGGSFGIDSYINYFF-- 293

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              +   T F+Y  E+ + F+DE      +   +              G+ L    D   
Sbjct: 294 ---DETETFFDYFNEEDIFFIDEPIRIEEKGKAVSFEWRESMTNRLTKGYILSKQADT-- 348

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
                W+  +    + S +     L + +   ++   R   L      +       E + 
Sbjct: 349 ----IWDYKKVLAKLESKSTVLLSLLETRTGDIKAKQRFDVLSRN---VNPYNNSFETLI 401

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            ++    ++G ++++   +K  AE L E   ER +   Y+ ++ +     E         
Sbjct: 402 KDLTRYKKEGYKVVVVSSSKVRAERLAEDFRERELMANYLSTDERVPVSGE--------- 452

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEG 663
             V+     LR G + P      I ++D  G
Sbjct: 453 --VVTIQGNLRRGFEYPSIKFAIISESDIFG 481



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 62/288 (21%), Positives = 106/288 (36%), Gaps = 35/288 (12%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
             + +SATP    L      I +  +    L +PPV+    +T V     E + + IN   
Sbjct: 779  VLTLSATPIPRTLHMSLVGIRDMSV----LEEPPVDRIPIQTYVLEHDDEIIREAINREI 834

Query: 580  QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +  ++          ++    L E     RV + H ++   E   I+ +   G+ DVLV
Sbjct: 835  GRNGQVYYVYNRVSGIDERAAKLAELIPGARVSFAHGQMNERELERIMIEFINGEIDVLV 894

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  GLDI     + I DADK G  +    L Q  GR  R+  +            +
Sbjct: 895  STTIIETGLDISNVNTIIIDDADKMGLSQ----LYQLRGRVGRSSRTSFAFLMYK-RDRM 949

Query: 698  QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
               I E   +R   ++         +   + +   I         + +  ++A    L  
Sbjct: 950  LKEIAE---KRLAAIKEFTDLGSGFKIAMKDLE--IRGAGNLLGKSQSGHMEAVGYDLYC 1004

Query: 758  KKGKAHLKSLRKQMHLAADNLNFEEAAR-----------IRDEIKRLK 794
            K     +K L+ +  +AAD   FE A             IR+E+ RL+
Sbjct: 1005 KMLNEEVKRLKGE-KVAAD--EFETAVDIEASAYIPADYIRNEVARLE 1049


>gi|291522023|emb|CBK80316.1| transcription-repair coupling factor [Coprococcus catus GD/7]
          Length = 1178

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 85/508 (16%), Positives = 189/508 (37%), Gaps = 44/508 (8%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            Q++  +  +     + G   S K   ++ + E      +++  N+I A ++Y +++  F
Sbjct: 15  DQIVSDLAGQRTPIHIDGCIDSQKCHLISSIGEPYP-FKLIVTYNEIKAKEIYEDYR--F 71

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
               V Y+             P  D         +  I   R    R +++R    VV++
Sbjct: 72  FDRNVYYY-------------PAKDIIFYNADIHSNLIVSQRMDVIRRMMDRCPVTVVTT 118

Query: 278 VSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           +  +   +  +E   +     K+GD +  + L   L    ++R       G F V G  +
Sbjct: 119 IDGLSDRLLPLEELQKNRCVFKVGDILPLEALSRKLTALGFERVSQVEGPGQFAVRGGIL 178

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +I+ +  ++  +RV ++G++I+ I  F   + + I  V+ + I   + Y+      +  +
Sbjct: 179 DIY-NLADECPYRVELWGDEIDSIRSFDAESQRSIEQVDEVTIDPAAEYIMSVSVRDRGL 237

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           K I  ++K ++  L+  G    A RL+Q +    + LE + +   I++  +Y       +
Sbjct: 238 KLIDRDMKQQMQRLKDAGNYEAAARLKQAVAELKDNLELSSAASGIDSLVQYFY-----D 292

Query: 457 PPPTLFEYIP-EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
              +  +Y   +DSL+ +DE      +   +            E G+ LP   +      
Sbjct: 293 HTVSFLDYFTEKDSLIILDEPARVAEKGEAVTAEYRESMMGRLEKGYVLPGQTEAIYECR 352

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           +    +     V+ +T            +  +    T        + + R   + +  E+
Sbjct: 353 KILARMGNLRTVLLSTLSY---NSAHIAVKSKYSMMTSS------MHTYRGDFQLLVKEL 403

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G R++L   ++   + L + L E ++   Y              RD      ++
Sbjct: 404 TGWKNSGYRLILVCRSETRGKRLVKDLAEYDLLAFY-----------SEDRDRVPAPGEI 452

Query: 636 LVGINLLREGLDIPECGLVAILDADKEG 663
           ++    L +G+  P      I ++D  G
Sbjct: 453 MIIHGSLHKGIQYPMIKFAIIAESDMFG 480



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 16/190 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    +      I +     + L + PV+ +  +T V     E + + I    
Sbjct: 779 VLTLTATPIPRTMHMSLIGIRDM----SLLEEAPVDRQPIQTYVMEYNDELIREAIMREL 834

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++          +++   L E   +  V Y H ++   E  +I+     G+ DVLV
Sbjct: 835 ARGGQVYYVYNRVNGIDEIAAGLSELVPDASVAYAHGQMSERELEKIMYQFINGEIDVLV 894

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + I DADK G L     L   +GR+ R   + ++   D + K +
Sbjct: 895 STTIIETGLDISNVNTMIIHDADKLG-LSQLYQLRGRVGRSNRTSYAFLMYKRDKMLKEV 953

Query: 698 QL----AIDE 703
                 AI E
Sbjct: 954 AEKRLSAIRE 963



 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 98/266 (36%), Gaps = 33/266 (12%)

Query: 534 SWELEQCQGIIVEQIIR---PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
            +E  Q Q   +E   R    T ++D  V       + E          Q+G +  + V 
Sbjct: 626 PYEETQDQLDAIEATKRDMESTKIMDRLVCGDVGFGKTEVAIRAAFKMVQEGRQCAVLVP 685

Query: 591 T----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREG 645
           T    ++      + + E  + +  +       E+ + + DL+ G+ D+++G + LL + 
Sbjct: 686 TTILAQQHYNTFCQRMKEYPVNIGLLSRFRTKAEQKKTLEDLKAGRVDIVIGTHRLLSKD 745

Query: 646 LDIPECGLVAILDADKEGFLR---------SKTSLIQTIGRAARNVNSKVILYADTITKS 696
           ++    GL+ + +  + G            +   L  T     R ++  +I   D     
Sbjct: 746 VEFKNLGLLVVDEEQRFGVTHKEKIKKIKENVDVLTLTATPIPRTMHMSLIGIRD----- 800

Query: 697 IQLAIDETTRRREKQ---LEHNKKHNINPQSVKEKIME------VIDPILLEDAATTNIS 747
           + L  +    R+  Q   +E+N +  +  +++  ++        V + +   D     +S
Sbjct: 801 MSLLEEAPVDRQPIQTYVMEYNDE--LIREAIMRELARGGQVYYVYNRVNGIDEIAAGLS 858

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHL 773
                 S++   G+   + L K M+ 
Sbjct: 859 ELVPDASVAYAHGQMSERELEKIMYQ 884


>gi|319654942|ref|ZP_08009016.1| transcription-repair coupling factor [Bacillus sp. 2_A_57_CT2]
 gi|317393367|gb|EFV74131.1| transcription-repair coupling factor [Bacillus sp. 2_A_57_CT2]
          Length = 1179

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 94/547 (17%), Positives = 195/547 (35%), Gaps = 50/547 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           ++ ++ GI    + Q+L G++GS +T  ++ + E   RP +V+  N + A +LY +  N 
Sbjct: 14  VSSIMSGIEEGLREQMLAGLSGSARTLFLSSIYEQSGRPMLVVTHNLLQAQKLYDDIVNL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + V  +             P  +    +    + ++   R  A     +    I++ 
Sbjct: 74  AGESEVFLY-------------PANELIAAEMGIASPELKAQRIEALNYWSKYKTGIMIV 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            ++ +   +     + +  + LKIGD +   E L + V+  Y R ++    G F V G  
Sbjct: 121 PMAGLRKILPPPGHWQKYQLSLKIGDEL-TDEQLKNFVRMGYVRSEMVSSPGEFSVRGGI 179

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E    R+ +F  +++ I  F     +    +  I I   +          T 
Sbjct: 180 IDIYP-LTEADPVRIELFDTEVDSIRTFSLEDQRSKEKLNEISIGPATEIPLDSEHFQTL 238

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ +++ L      L+K        +L Q + Y+LE L      + +  Y  +       
Sbjct: 239 IEKLEKGLGS---SLKKLKDDKAKTQLAQNVGYELEQLRMGNKPEHLFKYLSF-----AF 290

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E   +L +Y+P + L+F+DE          + + +     +L   G  +     +  L+ 
Sbjct: 291 EEGSSLVDYLPANGLIFIDEISRVQEMNDSLDKEEAEWYTSLLGEGQIIHDVKISHTLKE 350

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                  P T +         L        + II  T        +++   Q+  +  E+
Sbjct: 351 FLHRSKHPITYMSLF------LRHVPNTNPQNIINVTCKQ-----MQNFHGQMHVLKSEL 399

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   +    ++     +   + L   L +  I   ++  +   L           GK   
Sbjct: 400 DRWKKGRYSVVFLGPDEERIKKLQRVLEDYEIEAAFVSEDDPILT----------GKIQ- 448

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILYADT 692
            +    L+ G ++P   L  I + +       K +  Q +    R       KV  Y   
Sbjct: 449 -ITEGSLQTGFELPSQKLAVITEEELFNKRTKKKARRQKLSNAERIKSYSELKVGDYVVH 507

Query: 693 ITKSIQL 699
           +   I  
Sbjct: 508 VNHGIGK 514



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 62/181 (34%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +  
Sbjct: 773 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGALVREAIERELARDG 832

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   E +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 833 QVYFLYNRVEDIERKAEEISMLVPDARVTYAHGKMTENELESVMLSFLEGESDVLVSTTI 892

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DADK G  +    L Q  GR  R+       +     K +    
Sbjct: 893 IETGVDIPNVNTLIVHDADKMGLSQ----LYQLRGRVGRSNRVAYAYFTYRKDKVLTEVA 948

Query: 702 D 702
           +
Sbjct: 949 E 949


>gi|291518338|emb|CBK73559.1| Transcription-repair coupling factor (superfamily II helicase)
           [Butyrivibrio fibrisolvens 16/4]
          Length = 723

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 91/511 (17%), Positives = 193/511 (37%), Gaps = 47/511 (9%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+  L + +    K+  + G     K   +   I    +  +++  +++ A +LY E++
Sbjct: 12  TAVESLREALLKHGKIYDITGCAD--KAHLIYG-IGYDVKYKLIITSDELKARELYEEYR 68

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
             F  N V YF             P  D    +       + R R  A  +++  N C V
Sbjct: 69  --FFDNDVVYF-------------PAKDFLFYQSDIRGNALTRERMKAIEAVISNNSCTV 113

Query: 275 VSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           ++++  +   + ++  + + IV +   D+VE + L   LV   Y+        G F V G
Sbjct: 114 ITTIDALMNKLPALSYFEEGIVAVSDTDTVELEALRRKLVAMGYENVGTCEHPGEFAVRG 173

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+++P   E +  R+ ++G++++ I  + P   + I N+  + I+     +     + 
Sbjct: 174 GIIDVYPLTAE-LPVRIELWGDEVDSIRTYDPSNQKSIENINAVLIFPAVELILSAEEVA 232

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             +  I++E   R     KE +  EA  L+      +E     G  Q +E +  Y     
Sbjct: 233 AGLSKIEKERDERYEAYRKEMKTEEAFHLKTYADRVIEETREWGLSQELETHLTYFC--- 289

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             +   +  +++P+ + +F+DE    I +                E G+ L   MD    
Sbjct: 290 --DKLGSFADFMPKGTYVFIDEIQKVINKAEVTETEFADAMTRRVEAGYMLKGQMDMLYG 347

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVY 572
             E +  L    I +                  ++++        V+ + +     E + 
Sbjct: 348 MSEVFGKLEKYPITL----------MSVLDAKNKLLKSANHYSITVQGVNAYNGSFELLT 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            E+    ++  ++LL   +    + L E L +  +   Y  S++          D R+  
Sbjct: 398 KELLQYKKRKYKVLLVTSSATKGQRLAEDLLDEGLNA-YYTSDL----------DHRINP 446

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEG 663
            + ++ +  ++ G D P+   V + D D  G
Sbjct: 447 GETMICVGNIKRGFDYPDSAFVMLSDGDIFG 477


>gi|260437494|ref|ZP_05791310.1| transcription-repair coupling factor [Butyrivibrio crossotus DSM
           2876]
 gi|292810127|gb|EFF69332.1| transcription-repair coupling factor [Butyrivibrio crossotus DSM
           2876]
          Length = 1177

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 87/513 (16%), Positives = 200/513 (38%), Gaps = 57/513 (11%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             ++  +  +  V +  G     K + + K+ E   +  +++   +I A +LY +++   
Sbjct: 15  QNIIDDLKKKGNVPVAFGCVDQQKPYFIYKITEKFNKK-LIITGTEIRARELYEDYRAID 73

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
            +                 Y P  D         + ++ R R      L+   +  ++++
Sbjct: 74  KN---------------TYYYPAKDFIFYSADIRSNEVVRERLEVINHLINDREATIITT 118

Query: 278 V-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           +  C+  +   + + +  + +K GD ++ K L   LV   Y+        G F + G  I
Sbjct: 119 IDGCMDKLVPQDIFRKNTINIKTGDDIDIKGLSERLVNAGYENAGQTEHSGQFAIRGGII 178

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IFP ++E+   R+ ++  +++ +  F   + + + N+E I I+  +  +    TL + +
Sbjct: 179 DIFPVNMEN-PCRIELWDTEVDAMRLFDAESQRSVENIEEIDIFPATELLID-DTLASGI 236

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           K I+++       L KE ++ E+  +++ +    E L        +++Y +Y        
Sbjct: 237 KSIEKDAAKYSEALNKEAKITESNLIKKNVEELKEKLFVLKDRSGLDSYVKYFIKN---- 292

Query: 457 PPPTLFEYIP--EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
            P +L +Y    +D  + +DE    I ++  + +      +   E G  LP   +    +
Sbjct: 293 -PVSLADYFDYEKDG-IVIDEPVRIIEKMDVVEKEFRESMSHRLEKGSILPGQTEVLYSK 350

Query: 515 FEEWNCLRPTTIVV-----SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
            E ++ L   +++         P   EL       +               I S     E
Sbjct: 351 GEVFHKLALHSLMAVSVLDCKIP---ELNISGHYDINAKG-----------IGSYNNSFE 396

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +  +I    ++  RIL+   ++  A  L + L E +I   +  S+          ++++
Sbjct: 397 TLVSDIKNWKKKKYRILIVSGSEIRARRLAKDLMENDIMAAF--SDKSQ-------KEIK 447

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            G+  V+     LR+G + P+    A+ + D  
Sbjct: 448 EGE--VVTVCGKLRKGYEYPDIRFAAVAEDDIF 478



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 16/190 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            I +SATP    L      I +  +    L++PPV+    +T V     E V + +N   
Sbjct: 776 VITLSATPIPRTLHMSLIGIRDMSV----LMEPPVDRIPIQTFVTEYDEEMVREAVNREL 831

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++          +++T  + +      V + H ++   E  +I+ D   G  DVLV
Sbjct: 832 ARGGQVYYVYNKVLGIDEITLNIAKLVPEANVAFAHGQMSERELEKIMMDFINGDIDVLV 891

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA+K G L     L   +GR  R   + ++   D +   I
Sbjct: 892 STTIIETGLDIPNVNTIIIHDANKYG-LSQLYQLRGRVGRTGRMAYAFLMYKKDKVLSEI 950

Query: 698 QL----AIDE 703
                 AI E
Sbjct: 951 AEKRLSAIRE 960



 Score = 40.8 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 14/151 (9%)

Query: 90  QTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHP 149
           +T+      +      L +L  S           +  + ++ +  +     F+    Y P
Sbjct: 577 KTKTKVRGAVKQVADKLIKLYASR----------SARQGFAFSKDTPWQQEFEELFPYEP 626

Query: 150 SGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKIL 205
           + DQ  AI ++   + S R   +L+ G  G GKT      A       +  + + P  IL
Sbjct: 627 TTDQLTAIEEIKTDMESTRIMDRLICGDVGFGKTEVALRAAFKAVQDNKQVVYLCPTTIL 686

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           A Q+++ F +      VE  +        EA
Sbjct: 687 AKQIFTNFDSRMKDFGVEVRMLSRFCTPKEA 717


>gi|77407386|ref|ZP_00784276.1| excinuclease ABC, B subunit [Streptococcus agalactiae H36B]
 gi|77174005|gb|EAO76984.1| excinuclease ABC, B subunit [Streptococcus agalactiae H36B]
          Length = 200

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 87/189 (46%), Positives = 134/189 (70%)

Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
            +DTYIEK+SS+N++ID++RHSAT SLLERND IVV+SVSCIYG+GS + Y+  +V L+ 
Sbjct: 3   SSDTYIEKDSSVNDEIDKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRP 62

Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359
           G  + + +LL++LV  Q++R DI   RG FRV GD +E+FP+  ++ A+R+  FG++I+ 
Sbjct: 63  GQEISRDQLLNNLVDIQFERNDIDFQRGKFRVRGDVVEVFPASRDEHAFRIEFFGDEIDR 122

Query: 360 ISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419
           I E   LTG+ +  VE + I+  +H++T    +  A+  I+ E++ ++   EKEG+L+EA
Sbjct: 123 IREIESLTGRVLGEVEHLAIFPATHFMTNDEHMEEAISKIQAEMENQVELFEKEGKLIEA 182

Query: 420 QRLEQRITY 428
           QR+ QR  Y
Sbjct: 183 QRIRQRTEY 191


>gi|304315715|ref|YP_003850860.1| transcription-repair coupling factor [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777217|gb|ADL67776.1| transcription-repair coupling factor [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 1166

 Score =  229 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/510 (15%), Positives = 197/510 (38%), Gaps = 43/510 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
             IA++ + I       L+ G+T S K      +I+ + +  + +    + A  +Y +  
Sbjct: 10  KEIAEIDEAIEKERMPLLIYGLTDSQKAHIAHYIIKKLNKKVLFITYADVEARAIYEDLI 69

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +F   +A                +P  D    K  + +  +   R  A + +++      
Sbjct: 70  SFLNGDA--------------YLIPSRDALFYKVDASSLDLIGKRLIAVKKIIDDKPSAF 115

Query: 275 VSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S+  +   + S + + +   + KIGD ++ +EL SSL+   Y+R  +   +G F + G
Sbjct: 116 VASIDGVLNKVASKDIFLRYSRKYKIGDIIDLEELSSSLITMGYERVPMVEGKGQFSIRG 175

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+ F S +ED  +R+ +F + I+ I  F   T + + N+  ++++    ++     + 
Sbjct: 176 GIIDFF-SPMEDEGFRIELFDDVIDSIRSFDVFTQRSLNNLSEVELFPAREFILEDENIK 234

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             M+ +   +   + ++++      A++++++    +E +  T S  +I     +     
Sbjct: 235 KGMENLSSNVNSYVSKIKET-HSGRAEKIKKKFDEIMENISETKSVPNIGELISFFY--- 290

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             E   ++ +Y  +D+ + +DE+     + S +         +L   G  LP   +    
Sbjct: 291 --ERLYSIVDYF-DDAFIILDENIRVKERASNILTEFNENFKSLLLSGEVLPEQSNLLFS 347

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
             +    L   ++++  T    +       IV  + R          +     ++E + D
Sbjct: 348 YDDILKKLSGKSLILMNTIVKSDANIEVRSIVNFVSRS---------MHPFHGKLELLVD 398

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I    + G ++++          L + L    + V  +  E   +            + 
Sbjct: 399 DIKFYRKSGYKVVMLSSNLERGRILRDSLISYGLEVPIVDDEEYDIP-----------EG 447

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEG 663
            +L+    + +G +  +     I D +  G
Sbjct: 448 GILIYPGTVSKGFEYVDAKFALISDVEIFG 477



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 87/250 (34%), Gaps = 15/250 (6%)

Query: 525  TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             + +SATP    L      I +  +I        PV+        E + D I     +G 
Sbjct: 774  VLSLSATPIPRTLHMSLIGIRDMSVIENPPEDRYPVQTYVVEFNEELIRDAILRELGRGG 833

Query: 584  RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
            ++          E +   + E     R    H ++   +   I+     G +D+LV   +
Sbjct: 834  QVYFVYNRINGIERMASIIKELVPSARVAVAHGQMDEGKLENIMIGFLNGDYDILVCTTI 893

Query: 642  LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            +  GLDIP    + + D+DK G  +    L Q  GR  R+       +     K     I
Sbjct: 894  IETGLDIPNVNTIIVYDSDKMGLSQ----LYQLRGRVGRSNRLAYAYFTYRKDK----VI 945

Query: 702  DETTRRREKQLEHNKKHNINPQSVKEKIMEV-IDPILLEDAATTNISIDAQQLSLSKKKG 760
             E   +R + ++   +        K  + ++ I        A  +  IDA    +  +  
Sbjct: 946  TEVAEKRLEAIKEFTEFG---SGFKIAMRDLEIRGAGNLLGAEQHGHIDAIGYDMYLRLL 1002

Query: 761  KAHLKSLRKQ 770
               +K L+ +
Sbjct: 1003 DEAIKGLKGE 1012


>gi|315026785|gb|EFT38717.1| transcription-repair coupling factor [Enterococcus faecalis TX2137]
          Length = 1189

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 110/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  I+++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLA- 261

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 262 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 314

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 315 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 373

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 374 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 422

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 423 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 469

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 470 PKNKLVAITEKEIFHTTTKKRARRQTI 496



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 771 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 830

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 831 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 890

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 891 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 946

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 947 YEQ----QKILNEVSEKRLEAIK 965


>gi|227520043|ref|ZP_03950092.1| transcription-repair coupling factor [Enterococcus faecalis TX0104]
 gi|227072591|gb|EEI10554.1| transcription-repair coupling factor [Enterococcus faecalis TX0104]
          Length = 1189

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 110/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  I+++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKSDMNHGMMRLQDALEKRLA- 261

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 262 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 314

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 315 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 373

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 374 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 422

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 423 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 469

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 470 PKNKLVAITEKEIFHTTTKKRARRQTI 496



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 771 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 830

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 831 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 890

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 891 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 946

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 947 YEQ----QKILNEVSEKRLEAIK 965


>gi|257088020|ref|ZP_05582381.1| transcription-repair coupling factor [Enterococcus faecalis D6]
 gi|256996050|gb|EEU83352.1| transcription-repair coupling factor [Enterococcus faecalis D6]
          Length = 1179

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 110/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  I+++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLA- 251

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 252 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 304

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 305 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 363

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 364 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 412

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 413 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 459

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 460 PKNKLVAITEKEIFHTTTKKRARRQTI 486



 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 821 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 881 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 936

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 937 YEQ----QKILNEVSEKRLEAIK 955


>gi|256618332|ref|ZP_05475178.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
           4200]
 gi|256597859|gb|EEU17035.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
           4200]
          Length = 1179

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLA- 251

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 252 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 304

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 305 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 363

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 364 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 412

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 413 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 459

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 460 PKNKLVAITEKEIFHTTTKKRARRQTI 486



 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I     +  
Sbjct: 772 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDG 831

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   E L       R  Y H ++  ++    + D   G++D+LV   +
Sbjct: 832 QVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTI 891

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G     ++L Q  GR  R+       +        Q  +
Sbjct: 892 IETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFMYEQ----QKIL 943

Query: 702 DETTRRREKQLE 713
           +E + +R + ++
Sbjct: 944 NEVSEKRLEAIK 955


>gi|307276446|ref|ZP_07557569.1| transcription-repair coupling factor [Enterococcus faecalis TX2134]
 gi|306506926|gb|EFM76073.1| transcription-repair coupling factor [Enterococcus faecalis TX2134]
          Length = 1189

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLA- 261

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 262 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 314

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 315 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 373

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 374 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 422

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 423 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 469

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 470 PKNKLVAITEKEIFHTTTKKRARRQTI 496



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 771 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 830

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 831 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 890

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 891 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 946

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 947 YEQ----QKILNEVSEKRLEAIK 965


>gi|312904634|ref|ZP_07763789.1| transcription-repair coupling factor [Enterococcus faecalis TX0635]
 gi|310631986|gb|EFQ15269.1| transcription-repair coupling factor [Enterococcus faecalis TX0635]
 gi|315160777|gb|EFU04794.1| transcription-repair coupling factor [Enterococcus faecalis TX0645]
 gi|315579376|gb|EFU91567.1| transcription-repair coupling factor [Enterococcus faecalis TX0630]
          Length = 1189

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 110/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  I+++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLA- 261

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 262 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 314

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 315 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 373

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 374 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 422

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 423 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 469

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 470 PKNKLVAITEKEIFHTTTKKRARRQTI 496



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 771 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 830

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 831 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 890

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 891 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 946

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 947 YEQ----QKILNEVSEKRLEAIK 965


>gi|312901071|ref|ZP_07760360.1| transcription-repair coupling factor [Enterococcus faecalis TX0470]
 gi|311291817|gb|EFQ70373.1| transcription-repair coupling factor [Enterococcus faecalis TX0470]
          Length = 1189

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLA- 261

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 262 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 314

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 315 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 373

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 374 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 422

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 423 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 469

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 470 PKNKLVAITEKEIFHTTTKKRARRQTI 496



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 771 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 830

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 831 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 890

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 891 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 946

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 947 YEQ----QKILNEVSEKRLEAIK 965


>gi|257084193|ref|ZP_05578554.1| transcription-repair coupling factor [Enterococcus faecalis Fly1]
 gi|256992223|gb|EEU79525.1| transcription-repair coupling factor [Enterococcus faecalis Fly1]
          Length = 1179

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLA- 251

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 252 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 304

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 305 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 363

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 364 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 412

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 413 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 459

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 460 PKNKLVAITEKEIFHTTTKKRARRQTI 486



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 821 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 881 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 936

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 937 YEQ----QKILNEVSEKRLEAIK 955


>gi|257078484|ref|ZP_05572845.1| transcription-repair coupling factor [Enterococcus faecalis JH1]
 gi|256986514|gb|EEU73816.1| transcription-repair coupling factor [Enterococcus faecalis JH1]
          Length = 1179

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 110/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLA- 251

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 252 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 304

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 305 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 363

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 364 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 412

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + NI              +     L  G   ++     L+ G ++
Sbjct: 413 VPTKERIQKVEELFQDFNIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 459

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 460 PKNKLVAITEKEIFHTTTKKRARRQTI 486



 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 821 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 881 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 936

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 937 YEQ----QKILNEVSEKRLEAIK 955


>gi|257088697|ref|ZP_05583058.1| transcription-repair coupling factor [Enterococcus faecalis CH188]
 gi|256997509|gb|EEU84029.1| transcription-repair coupling factor [Enterococcus faecalis CH188]
          Length = 1179

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 110/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  I+++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLA- 251

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 252 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 304

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 305 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 363

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 364 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 412

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 413 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 459

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 460 PKNKLVAITEKEIFHTTTKKRARRQTI 486



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 821 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 881 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 936

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 937 YEQ----QKILNEVSEKRLEAIK 955


>gi|307278656|ref|ZP_07559726.1| transcription-repair coupling factor [Enterococcus faecalis TX0860]
 gi|306504716|gb|EFM73916.1| transcription-repair coupling factor [Enterococcus faecalis TX0860]
          Length = 1189

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLA- 261

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 262 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 314

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 315 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 373

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 374 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 422

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 423 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 469

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 470 PKNKLVAITEKEIFHTTTKKRARRQTI 496



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 771 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 830

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 831 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 890

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 891 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 946

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 947 YEQ----QKILNEVSEKRLEAIK 965


>gi|257417623|ref|ZP_05594617.1| transcription-repair coupling factor [Enterococcus faecalis
           AR01/DG]
 gi|257159451|gb|EEU89411.1| transcription-repair coupling factor [Enterococcus faecalis
           ARO1/DG]
          Length = 1179

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLA- 251

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 252 --TAKDQTETDFLEEYFGQLLSFWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 304

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 305 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 363

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 364 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 412

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 413 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 459

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 460 PKNKLVAITEKEIFHTTTKKRARRQTI 486



 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 821 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 881 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 936

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 937 YEQ----QKILNEVSEKRLEAIK 955


>gi|255974757|ref|ZP_05425343.1| transcription-repair coupling factor [Enterococcus faecalis T2]
 gi|255967629|gb|EET98251.1| transcription-repair coupling factor [Enterococcus faecalis T2]
          Length = 1179

 Score =  227 bits (578), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLA- 251

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 252 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 304

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 305 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 363

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 364 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 412

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 413 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 459

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 460 PKNKLVAITEKEIFHTTTKKRARRQTI 486



 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 821 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 881 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 936

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 937 YEQ----QKILNEVSEKRLEAIK 955


>gi|229550502|ref|ZP_04439227.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
           29200]
 gi|307286964|ref|ZP_07567039.1| transcription-repair coupling factor [Enterococcus faecalis TX0109]
 gi|307290197|ref|ZP_07570115.1| transcription-repair coupling factor [Enterococcus faecalis TX0411]
 gi|229304359|gb|EEN70355.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
           29200]
 gi|306498753|gb|EFM68252.1| transcription-repair coupling factor [Enterococcus faecalis TX0411]
 gi|306501910|gb|EFM71199.1| transcription-repair coupling factor [Enterococcus faecalis TX0109]
 gi|315028825|gb|EFT40757.1| transcription-repair coupling factor [Enterococcus faecalis TX4000]
 gi|315168150|gb|EFU12167.1| transcription-repair coupling factor [Enterococcus faecalis TX1341]
 gi|315171410|gb|EFU15427.1| transcription-repair coupling factor [Enterococcus faecalis TX1342]
          Length = 1189

 Score =  227 bits (578), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLA- 261

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 262 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 314

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 315 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 373

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 374 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 422

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 423 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 469

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 470 PKNKLVAITEKEIFHTTTKKRARRQTI 496



 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 771 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 830

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 831 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 890

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 891 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 946

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 947 YEQ----QKILNEVSEKRLEAIK 965


>gi|315145387|gb|EFT89403.1| transcription-repair coupling factor [Enterococcus faecalis TX2141]
          Length = 1189

 Score =  227 bits (578), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLA- 261

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 262 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 314

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 315 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 373

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 374 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 422

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 423 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 469

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 470 PKNKLVAITEKEIFHTTTKKRARRQTI 496



 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 771 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 830

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 831 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 890

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 891 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 946

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 947 YEQ----QKILNEVSEKRLEAIK 965


>gi|293382707|ref|ZP_06628632.1| transcription-repair coupling factor [Enterococcus faecalis R712]
 gi|293388111|ref|ZP_06632638.1| transcription-repair coupling factor [Enterococcus faecalis S613]
 gi|307268510|ref|ZP_07549885.1| transcription-repair coupling factor [Enterococcus faecalis TX4248]
 gi|312908603|ref|ZP_07767545.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
           512]
 gi|312909249|ref|ZP_07768106.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
           516]
 gi|291079867|gb|EFE17231.1| transcription-repair coupling factor [Enterococcus faecalis R712]
 gi|291082487|gb|EFE19450.1| transcription-repair coupling factor [Enterococcus faecalis S613]
 gi|306515171|gb|EFM83711.1| transcription-repair coupling factor [Enterococcus faecalis TX4248]
 gi|310625390|gb|EFQ08673.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
           512]
 gi|311290491|gb|EFQ69047.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
           516]
 gi|315032977|gb|EFT44909.1| transcription-repair coupling factor [Enterococcus faecalis TX0017]
 gi|315036610|gb|EFT48542.1| transcription-repair coupling factor [Enterococcus faecalis TX0027]
 gi|315147120|gb|EFT91136.1| transcription-repair coupling factor [Enterococcus faecalis TX4244]
          Length = 1189

 Score =  227 bits (578), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLA- 261

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 262 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 314

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 315 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 373

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 374 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 422

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 423 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 469

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 470 PKNKLVAITEKEIFHTTTKKRARRQTI 496



 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 771 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 830

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 831 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 890

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 891 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 946

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 947 YEQ----QKILNEVSEKRLEAIK 965


>gi|256762052|ref|ZP_05502632.1| transcription-repair coupling factor [Enterococcus faecalis T3]
 gi|256683303|gb|EEU22998.1| transcription-repair coupling factor [Enterococcus faecalis T3]
          Length = 1179

 Score =  227 bits (578), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 110/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  I+++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLA- 251

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 252 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 304

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 305 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EIRVFSEQTFGVDFHDQLRKTARNTTFFS 363

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 364 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 412

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 413 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 459

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 460 PKNKLVAITEKEIFHTTTKKRARRQTI 486



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 821 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 881 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 936

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 937 YEQ----QKILNEVSEKRLEAIK 955


>gi|229546913|ref|ZP_04435638.1| transcription-repair coupling factor [Enterococcus faecalis TX1322]
 gi|312952657|ref|ZP_07771521.1| transcription-repair coupling factor [Enterococcus faecalis TX0102]
 gi|229307841|gb|EEN73828.1| transcription-repair coupling factor [Enterococcus faecalis TX1322]
 gi|310629445|gb|EFQ12728.1| transcription-repair coupling factor [Enterococcus faecalis TX0102]
 gi|315153559|gb|EFT97575.1| transcription-repair coupling factor [Enterococcus faecalis TX0031]
 gi|315156261|gb|EFU00278.1| transcription-repair coupling factor [Enterococcus faecalis TX0043]
          Length = 1189

 Score =  227 bits (578), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLA- 261

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 262 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 314

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 315 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 373

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 374 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 422

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 423 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 469

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 470 PKNKLVAITEKEIFHTTTKKRARRQTI 496



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 771 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 830

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 831 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 890

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 891 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 946

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 947 YEQ----QKILNEVSEKRLEAIK 965


>gi|256855211|ref|ZP_05560572.1| transcription-repair coupling factor [Enterococcus faecalis T8]
 gi|256709724|gb|EEU24771.1| transcription-repair coupling factor [Enterococcus faecalis T8]
          Length = 1179

 Score =  227 bits (578), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLA- 251

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 252 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 304

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 305 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 363

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 364 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 412

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 413 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 459

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 460 PKNKLVAITEKEIFHTTTKKRARRQTI 486



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 821 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 881 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 936

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 937 YEQ----QKILNEVSEKRLEAIK 955


>gi|256956814|ref|ZP_05560985.1| transcription-repair coupling factor [Enterococcus faecalis DS5]
 gi|256960620|ref|ZP_05564791.1| transcription-repair coupling factor [Enterococcus faecalis Merz96]
 gi|257081545|ref|ZP_05575906.1| transcription-repair coupling factor [Enterococcus faecalis E1Sol]
 gi|294779317|ref|ZP_06744720.1| transcription-repair coupling factor [Enterococcus faecalis PC1.1]
 gi|300861968|ref|ZP_07108048.1| transcription-repair coupling factor [Enterococcus faecalis TUSoD
           Ef11]
 gi|256947310|gb|EEU63942.1| transcription-repair coupling factor [Enterococcus faecalis DS5]
 gi|256951116|gb|EEU67748.1| transcription-repair coupling factor [Enterococcus faecalis Merz96]
 gi|256989575|gb|EEU76877.1| transcription-repair coupling factor [Enterococcus faecalis E1Sol]
 gi|294453603|gb|EFG22002.1| transcription-repair coupling factor [Enterococcus faecalis PC1.1]
 gi|300848493|gb|EFK76250.1| transcription-repair coupling factor [Enterococcus faecalis TUSoD
           Ef11]
          Length = 1179

 Score =  227 bits (578), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLA- 251

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 252 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 304

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 305 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 363

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 364 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 412

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 413 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 459

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 460 PKNKLVAITEKEIFHTTTKKRARRQTI 486



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 821 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 881 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 936

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 937 YEQ----QKILNEVSEKRLEAIK 955


>gi|307274221|ref|ZP_07555429.1| transcription-repair coupling factor [Enterococcus faecalis TX0855]
 gi|306509183|gb|EFM78245.1| transcription-repair coupling factor [Enterococcus faecalis TX0855]
 gi|315151127|gb|EFT95143.1| transcription-repair coupling factor [Enterococcus faecalis TX0012]
          Length = 1189

 Score =  227 bits (578), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 110/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  I+++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLA- 261

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 262 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 314

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 315 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 373

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 374 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 422

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 423 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 469

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 470 PKNKLVAITEKEIFHTTTKKRARRQTI 496



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 771 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 830

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 831 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 890

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 891 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 946

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 947 YEQ----QKILNEVSEKRLEAIK 965


>gi|150388007|ref|YP_001318056.1| transcription-repair coupling factor [Alkaliphilus metalliredigens
           QYMF]
 gi|149947869|gb|ABR46397.1| transcription-repair coupling factor [Alkaliphilus metalliredigens
           QYMF]
          Length = 1174

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 90/508 (17%), Positives = 200/508 (39%), Gaps = 49/508 (9%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           QLL  ++  +    + G+  S K      + +       ++  +++ A ++  + K +  
Sbjct: 18  QLLDRVNLEKTPVAIHGLNDSQKGHMSYGLFDDSNEQVCILTYSEVEARKIEQDLKFYIG 77

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
              +              + P  +       +  +   + R    + +      +VV+S+
Sbjct: 78  DRGL--------------FFPSREVIFYDLKAQTDHAQQERMETLQKIATGEKHVVVASI 123

Query: 279 -SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            S +  +     Y +  +  K+G+S++ +++  + VKQ Y+R +     G F + G  I+
Sbjct: 124 ESLLLKLIPPALYKKDQISFKVGESIDLEKVTETFVKQGYERVEQVEGNGQFSIRGGIID 183

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           I+ S  E   +R+ +F ++++ I +F   T +  + V+ + IY  +  +     + + ++
Sbjct: 184 IY-SGGEISPYRIELFDDEVDSIRQFQVDTQRSTQKVQELLIYPVAETIIEPSAVESVIQ 242

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            I+ E      +L+   +    +RL +++          G    +E Y+ YL      E 
Sbjct: 243 AIEAEGAALSKKLKGGPK----ERLAEKVAEVSNKFREFGHFNGVEQYAPYLY-----EQ 293

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
             +L +Y+  ++L+ +DE      ++ G          TL E G  LP+   N  L +++
Sbjct: 294 EASLLDYLNPNALVIIDEPQRCKERVRGYEGEFKENFKTLLERGEVLPTQG-NLLLAYDK 352

Query: 518 WNC--LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                L    I +S  P     +       ++II           ++S   ++  + DE+
Sbjct: 353 LVKSVLERRVITLSLLP-----KNTPDFPPKEIINFMARP-----VQSFHGKINLLIDEL 402

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                +G +I+L   TK  A  L E L ER I V ++         +    ++  G+  +
Sbjct: 403 KSLQYKGYKIVLLPGTKERALRLLELLRERGIPVEFV---------VSHKEEIVSGQ--I 451

Query: 636 LVGINLLREGLDIPECGLVAILDADKEG 663
            +    +  G +      + I D +  G
Sbjct: 452 FIMQGSINRGFEYSSMKYMTITDYEIYG 479



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 92/256 (35%), Gaps = 28/256 (10%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
             + ++ATP    L      I +  +    + DPP E    +T V       + D I    
Sbjct: 776  VLTLTATPIPRTLHMSMVGIRDMSV----IEDPPEERFPVQTYVIPYNESMIIDAITKEM 831

Query: 580  QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +G +             +   L E     RV   H ++   E   ++ D   G +DVLV
Sbjct: 832  ARGGQTYYVYNRVDGIHQVARKLQELIPEARVAVGHGQMGERELEMLMMDYLDGVYDVLV 891

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  GLDI     + I DADK G L     L   +GR+++   + ++   D I    
Sbjct: 892  CTTIIETGLDISNVNTIMIHDADKLG-LSQLYQLRGRVGRSSQQGYAYLMYQRDKI---- 946

Query: 698  QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
               + E   +R K ++   +        K  + +      LE     N+    Q   ++ 
Sbjct: 947  ---LSEVAEKRLKAIKEFTEFG---SGFKIAMRD------LEIRGAGNLLGSQQHGHMAS 994

Query: 758  KKGKAHLKSLRKQMHL 773
                 ++K L + M  
Sbjct: 995  IGYDLYIKLLEETMAE 1010


>gi|255971757|ref|ZP_05422343.1| transcription-repair coupling factor [Enterococcus faecalis T1]
 gi|257421547|ref|ZP_05598537.1| transcription-repair coupling factor [Enterococcus faecalis X98]
 gi|255962775|gb|EET95251.1| transcription-repair coupling factor [Enterococcus faecalis T1]
 gi|257163371|gb|EEU93331.1| transcription-repair coupling factor [Enterococcus faecalis X98]
 gi|323479470|gb|ADX78909.1| transcription-repair coupling factor [Enterococcus faecalis 62]
          Length = 1179

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLA- 251

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 252 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 304

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 305 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 363

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 364 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 412

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 413 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 459

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 460 PKNKLVAITEKEIFHTTTKKRARRQTI 486



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 821 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 881 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 936

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 937 YEQ----QKILNEVSEKRLEAIK 955


>gi|256964180|ref|ZP_05568351.1| transcription-repair coupling factor [Enterococcus faecalis
           HIP11704]
 gi|256954676|gb|EEU71308.1| transcription-repair coupling factor [Enterococcus faecalis
           HIP11704]
          Length = 1179

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 110/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  I+++P + E    R
Sbjct: 134 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLA- 251

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 252 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 304

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 305 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 363

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 364 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 412

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 413 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 459

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 460 PKNKLVAITEKEIFHTTTKKRARRQTI 486



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 821 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 881 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 936

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 937 YEQ----QKILNEVSEKRLEAIK 955


>gi|327534054|gb|AEA92888.1| transcription-repair coupling factor [Enterococcus faecalis OG1RF]
          Length = 1189

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 110/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  I+++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIIDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLA- 261

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 262 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 314

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 315 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 373

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 374 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 422

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 423 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGYVQIV--QGALQTGFEL 469

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 470 PKNKLVAITEKEIFHTTTKKRARRQTI 496



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 771 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 830

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 831 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 890

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 891 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 946

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 947 YEQ----QKILNEVSEKRLEAIK 965


>gi|315172643|gb|EFU16660.1| transcription-repair coupling factor [Enterococcus faecalis TX1346]
          Length = 1189

 Score =  226 bits (577), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQAMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMMRLQDALEKRLA- 261

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 262 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 314

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 315 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 373

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 374 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 422

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 423 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 469

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 470 PKNKLVAITEKEIFHTTTKKRARRQTI 496



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 771 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 830

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 831 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 890

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 891 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 946

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 947 YEQ----QKILNEVSEKRLEAIK 965


>gi|332981377|ref|YP_004462818.1| transcription-repair coupling factor [Mahella australiensis 50-1
           BON]
 gi|332699055|gb|AEE95996.1| transcription-repair coupling factor [Mahella australiensis 50-1
           BON]
          Length = 1159

 Score =  226 bits (577), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 99/536 (18%), Positives = 206/536 (38%), Gaps = 65/536 (12%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE-AMQRPAIVMAPNKILAAQLYSEFKNF 216
            ++   + +      + GV   G+ + M  ++  A  + AIV+  N++ A QLY +  + 
Sbjct: 16  KRIHDSLRNDSDRLEIYGVPDEGRAYLMYVLVNIASSKSAIVITHNEVRAKQLYDDMSSI 75

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           F    V  F             P  +T +   S  + ++   R      L  + + IV++
Sbjct: 76  FKDIPVYLF-------------PAAETILYDVSGKSNEVLFQRLEIENRLAFKENMIVIA 122

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           S+  +   +   E +++   ++ IG  +E+  +   L++  Y+R+++   +G F + GD 
Sbjct: 123 SIDALLPRLMPFEEFNKYFHEISIGQIIERDVMERWLLEAGYQREELVEAKGQFAIRGDI 182

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+ +P   E+ A+R+  F ++++ I  F   T +    V+   I      V      + A
Sbjct: 183 IDFYPIVGEE-AYRIEFFDDEVDSIRRFDADTQRSTDKVDKAVISPVKELVYDSGVADRA 241

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
            K ++ E               E      +I  D+E+L      +++E Y  +   +  G
Sbjct: 242 AKAMRSEF--------------ERINGNDQIGGDIELLSQNARFENVERYMPFFYNKVAG 287

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
                L +Y+P  +L F++E      +   ++         L   G  LPS         
Sbjct: 288 -----LLDYMPTGTLFFMEEEERIRQRNRTLHEEFEQVFKALLIKGEVLPSQAYLLSDYD 342

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
              +CL     V+  T               Q      +     +I S +  ++ + DE+
Sbjct: 343 ALCSCLNRQRAVMLET-------------FHQAGTKPSIKIDAKKIPSFQGNMDIIVDEL 389

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  I++  L+      + + L +  I   +         R++I  D+R G+  +
Sbjct: 390 RQWKSAGYTIIIATLSDNRGLRIQDMLQQSGIEAWF-------TRRLDI--DMRPGQICI 440

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +     L  G + P+   V + D +  G ++ + S ++T     R    +V  ++D
Sbjct: 441 IDMP--LSSGTEWPDIKCVILTDQELFG-MQRRRSKVKT-----RKAGQRVTAFSD 488



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 10/186 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      I +  II        PV+          + D I     +G 
Sbjct: 763 VLTLTATPIPRTLHMSLSGIRDISIIETPPEDRYPVQTYVVEYDENIIRDAILKELGRGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +  +L+E     R    H  +   +   ++ D   G +DVL+   +
Sbjct: 823 QVYFVYNRINSIDVMAIHLHELVPEARIAVAHGRMGDDKLERVMMDFMDGYYDVLLCTTI 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + + DAD  G  +    L Q  GR  R+       +     + +    
Sbjct: 883 IETGLDIPNVNTLIVYDADHFGLAQ----LYQLRGRVGRSNRLAYAYFTYKKDRVLT--- 935

Query: 702 DETTRR 707
           +E  +R
Sbjct: 936 EEAEKR 941


>gi|315158594|gb|EFU02611.1| transcription-repair coupling factor [Enterococcus faecalis TX0312]
          Length = 1189

 Score =  226 bits (577), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 195/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLA- 261

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L          TL +Y+PE+S
Sbjct: 262 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQLK-----TTLLDYLPENS 314

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 315 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 373

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 374 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 422

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 423 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 469

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 470 PKNKLVAITEKEIFHTTTKKRARRQTI 496



 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 771 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 830

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 831 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 890

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 891 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 946

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 947 YEQ----QKILNEVSEKRLEAIK 965


>gi|327438085|dbj|BAK14450.1| transcription-repair coupling factor [Solibacillus silvestris
           StLB046]
          Length = 1170

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 83/521 (15%), Positives = 186/521 (35%), Gaps = 51/521 (9%)

Query: 157 IAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           I  +++ I   +    L+ G+TGS +   +  + +   +   +M+ N + A +L  +   
Sbjct: 14  IDNMIEQIRKNQANDHLITGLTGSARPALIHTIYQETNKSIYIMSSNLLQAQKLVDDLTA 73

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
                 V Y+             P  +      ++ + ++   R +    L+ +   I +
Sbjct: 74  LVGDGHVHYY-------------PAEEFIAANMTTSSHELRAQRIATLGRLVNQERGIYI 120

Query: 276 SSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
             V+ +  + +  + +    +   +G  V+    L  LV+  Y R ++    G F + G 
Sbjct: 121 IPVAGMRSMLNAPQKWLGYELSTSLGQDVDINTWLDKLVEMGYTRSEMVTTPGEFAMRGG 180

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++I+P + +D   R+ +F  +++ I  F     + I  ++ IKI+  +  +  +     
Sbjct: 181 ILDIYPPYAQD-PIRIELFDTEVDSIRTFSADNQRSIEKLKEIKIFPATELLLTKEERIK 239

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
             + ++  L + L ++    +    + L Q I +D+E+L        I  Y   L     
Sbjct: 240 LAERLEASLAVSLKKVR---KQETQELLMQNIQHDIELLRLGHLPDHIAKYGSLLF---- 292

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
            + P  L +Y  ED L+  DE       +    R +     +L E G  L     +  L+
Sbjct: 293 -DQPYFLGDYFKEDGLVLFDELGRIQEVMEAWEREENEWFISLIEGGKMLHDVKPSHSLK 351

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            E  + L+   +        +        + + I      +           Q+  + +E
Sbjct: 352 -EVLSMLKQQKMYF----ALFTRTFAGVTLKKTINISCKPMQQ------FHGQIALLQNE 400

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I     +   +L T  +    + +   L + +I     +++   +               
Sbjct: 401 IERWTHEKFVVLFTANSDSRIKAMQNLLDDYHIASTIGYADAPGIY-------------- 446

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            LV    L  G ++P   +  + D +       K S  Q +
Sbjct: 447 -LVNTA-LSSGFELPLQKIAVVTDDELFKQQAKKKSRPQQM 485



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 70/185 (37%), Gaps = 13/185 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 771 VLTLTATPIPRTLHMSMVGVRDLSVIETPPQNRFPVQTYVMEHNGALVREAIEREMARGG 830

Query: 584 RILLTVLTKRMAEDLTEYLYERNI-----RVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++          ED+T  + E  +     RV + H ++   +   +I     G++DVLV 
Sbjct: 831 QVFYLY---NRVEDITRRVEEIQMLVPDARVAFAHGKMTEAKLESVILSFIEGEYDVLVT 887

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DIP    + + DAD+ G  +    L Q  GR  R+       +     K + 
Sbjct: 888 TTIIETGVDIPNVNTLIVHDADRMGLSQ----LYQLRGRVGRSNRIAYAYFMYERDKVLT 943

Query: 699 LAIDE 703
              ++
Sbjct: 944 EVAEQ 948


>gi|332971077|gb|EGK10047.1| transcription-repair coupling factor [Desmospora sp. 8437]
          Length = 1181

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 86/512 (16%), Positives = 181/512 (35%), Gaps = 52/512 (10%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +    K Q++ G+TGS +   +A +    +RP +++  N   A +   +     P + V 
Sbjct: 21  LKEGLKEQMVAGLTGSARMLYVASLYRETRRPVLLVTHNLNQAQKAVEDLYELLPKDQVL 80

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
            +             P  +    + +    +    R      L +    + V   + +  
Sbjct: 81  LY-------------PANELVATEIALDGHETLGERVQVLSRLSKGFSGVFVVPFAGLRK 127

Query: 284 IGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           +             LK+G+    + L+  LVK  ++R ++    G F V G  ++IFP  
Sbjct: 128 LVPPAHVFSANHRTLKVGEVYPVESLIDQLVKVGFERVEMVEKPGEFSVRGGILDIFPVT 187

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
                 RV  F ++++ I  F     +     + ++I           +L  A   +   
Sbjct: 188 YS-HPVRVEWFDDEVDSIRPFSVADQRSQTKWDQVEIPPARELFADSDSLYRAGDEVAGL 246

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
           L+ RL +++        Q+L ++IT+++E L++      I  Y   +   N      TL 
Sbjct: 247 LQERLSKVKD---PELRQKLTEKITWEIEQLKSGTLFTGIYKYISRIYPGN-----HTLL 298

Query: 463 EYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLR 522
           +Y+ ++++  +DE          M + +   +  L + G  LP  +       E ++   
Sbjct: 299 DYLAKETVWVLDEPARIQESARQMEKEEGEWQTALLQEGEFLP-QLKVSHSYEELFSRRE 357

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--IRPTGLVDPPVE-IRSARTQVEDVYDEINLAA 579
              I +S             + + Q+  I+P  +V      ++    Q+  +  E +   
Sbjct: 358 HPRIYLS-------------LFMRQVSGIQPQNIVQFICRGMQQFHGQMHVLKTEWDRWV 404

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +   R+L    T+  A  L   L +  + V           R      L  G+  + V  
Sbjct: 405 KSKYRVLFLASTEERAARLERVLADYGMEV----------SRTRDESPLVPGRPTIRVAS 454

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
             L  G ++    L  + + +     R +   
Sbjct: 455 --LAGGFEMGGARLAVVTEGEVFTQKRRRIRR 484



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 774 VLTLTATPIPRTLHMSMMGVRDLSVIETPPENRFPVQTYVLEYSAALVREAIEREMARGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  + + E +       R    H ++   E  +++ D   G+ DVLV   +
Sbjct: 834 QVYFLYNQVQNIDKMAEQIRMLVPDARIAVAHGQMAETELEKVMLDFLDGETDVLVSTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I +AD+ G  +    L Q  GR  R+       +           +
Sbjct: 894 IETGVDIPNVNTLIIYNADRMGLSQ----LYQLRGRVGRSNRIAYAYFTY----QRNKVL 945

Query: 702 DETTRRREKQLEHNKKHN 719
            ET  +R + ++   +  
Sbjct: 946 SETAEKRLQAIKEFTELG 963


>gi|315165851|gb|EFU09868.1| transcription-repair coupling factor [Enterococcus faecalis TX1302]
          Length = 1189

 Score =  224 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 195/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL  G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLFTGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLA- 261

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 262 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 314

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 315 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 373

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 374 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 422

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 423 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 469

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 470 PKNKLVAITEKEIFHTTTKKRARRQTI 496



 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 771 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 830

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 831 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 890

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 891 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 946

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 947 YEQ----QKILNEVSEKRLEAIK 965


>gi|29374898|ref|NP_814051.1| transcription-repair coupling factor [Enterococcus faecalis V583]
 gi|227555903|ref|ZP_03985950.1| transcription-repair coupling factor [Enterococcus faecalis HH22]
 gi|29342356|gb|AAO80122.1| transcription-repair coupling factor [Enterococcus faecalis V583]
 gi|227174960|gb|EEI55932.1| transcription-repair coupling factor [Enterococcus faecalis HH22]
 gi|315573564|gb|EFU85755.1| transcription-repair coupling factor [Enterococcus faecalis
           TX0309B]
 gi|315582088|gb|EFU94279.1| transcription-repair coupling factor [Enterococcus faecalis
           TX0309A]
          Length = 1189

 Score =  224 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 37  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 91

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 92  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 143

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 144 WQNAQLYWEIGTEVEPEILAQRLVLMGYERQAMVGKPGEFSIRGSIVDVYPLNAE-YPVR 202

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 203 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLA- 261

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 262 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 314

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 315 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 373

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 374 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 422

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 423 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 469

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 470 PKNKLVAITEKEIFHTTTKKRARRQTI 496



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 771 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 830

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 831 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 890

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 891 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 946

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 947 YEQ----QKILNEVSEKRLEAIK 965


>gi|257418651|ref|ZP_05595645.1| transcription-repair coupling factor [Enterococcus faecalis T11]
 gi|257160479|gb|EEU90439.1| transcription-repair coupling factor [Enterococcus faecalis T11]
          Length = 1179

 Score =  224 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 196/507 (38%), Gaps = 49/507 (9%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G++GS KT  MA  ++   +  ++  PN   A QL  +F N  P   V  F     
Sbjct: 27  QLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLYYANQLVDDFLNILPSEQVHLF----- 81

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVES 289
                   P  +    + +  + +    R SA   L+  N  IVV  V+ +   + + E+
Sbjct: 82  --------PVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVPVAGLRKYLPTKET 133

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG  VE + L   LV   Y+RQ +    G F + G  ++++P + E    R
Sbjct: 134 WQNAQLYWEIGTEVEPEILAQRLVLMGYERQAMVGKPGEFSIRGSIVDVYPLNAE-YPVR 192

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           V +F  +I+ I  F   T + + N+E + I   +  V  +  +N  M  +++ L+ RL  
Sbjct: 193 VELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMTRLQDALEKRLA- 251

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E   LE+     L   E     ++   Y+ +L  +       TL +Y+PE+S
Sbjct: 252 --TAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQK-----TTLLDYLPENS 304

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +    E   R+ S         ++       T   S
Sbjct: 305 LLFVDDYSRMMETEREIAREEAEWQTLKIE-EMRVFSEQTFGVDFHDQLRKTARNTTFFS 363

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G   L   +    +   R                Q+  +  E++   +Q   +++ 
Sbjct: 364 LFQKGMGNLRFQEVHNFQ--YRSMQQFF---------GQMPLLKAEVDRWQKQNQTVVVF 412

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + + E   + +I              +     L  G   ++     L+ G ++
Sbjct: 413 VPTKERIQKVEELFQDFDIPSV-----------VSNWDQLLDGHVQIV--QGALQTGFEL 459

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTI 675
           P+  LVAI + +       K +  QTI
Sbjct: 460 PKNKLVAITEKEIFHTTTKKRARRQTI 486



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +  ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 821 EAIEREMARDGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 881 GQYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 936

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 937 YEQ----QKILNEVSEKRLEAIK 955


>gi|4090863|gb|AAC98900.1| transcription-repair coupling factor [Listeria monocytogenes]
          Length = 1190

 Score =  223 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 88/529 (16%), Positives = 203/529 (38%), Gaps = 50/529 (9%)

Query: 138 ITFFQMQTDYHPSGDQP-----AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM 192
           + F   ++ +   G Q        I  +L  +  +EK QL+ G+TGS +    + V  A 
Sbjct: 1   MNFLTKRSCFPLKGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGAS 60

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +RP + +  N   A +LY +  +    + +  +             P  +    + S  +
Sbjct: 61  KRPVVFVTHNLYHAQKLYDDLLSLMDVDRLFLY-------------PADELISSELSISS 107

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSS 311
            ++   R  A   LL     IV+  V+ +  +    S  +     +  G+ ++   L   
Sbjct: 108 PELRGQRVEALDFLLSGKPGIVIVPVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQK 167

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV   Y    +    G F V G  I+I+P   E+   R+ +F  +++ +  F   T +  
Sbjct: 168 LVTMGYTMSGMVNTPGEFSVRGGIIDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRST 226

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
             VE  ++   +  +  +      +K +++++   L EL++     + Q L + +  DLE
Sbjct: 227 TRVEEFRLLPATEIILDQSYYPDIVKRLEKKMTHTLNELKE---NEDKQALVENLEEDLE 283

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           ML +       + + +Y+    P   P +LF+Y P+++ + +DE    +     + R + 
Sbjct: 284 MLRSGVKP---DMFFKYIGLAYPD--PASLFDYFPKNTAILLDEFGRILETEESLEREEA 338

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
             +        R+ +  D +      +  L    +  + +P  +     + +   ++ + 
Sbjct: 339 EWQTETLS---RMETVRDVQVS--HSFKKL----LEANHSPKIYLSLFQKQMASMRVSKT 389

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           T +V     ++    Q+  +  E+    +    +++       AE + + L + ++    
Sbjct: 390 TNIVYKQ--MQQFHGQMNVLKTELESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTI 447

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           +  E             + G    ++G    + G ++P   +  I + +
Sbjct: 448 LKKESDVP---------KYGMVQFVIGT--FQNGFELPLAKVAIISETE 485



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 14/188 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+   A      V + I     +  
Sbjct: 786 VLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDG 845

Query: 584 RILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++           + A++++  + +  +     H ++   E   +I     G+FDVLV  
Sbjct: 846 QVYYLYNRVESITQKADEISAMVPDARVATA--HGQMGESELESVILSFLEGEFDVLVTT 903

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G L     L   +GR  R   +  +   D I +    
Sbjct: 904 TIIETGVDIPNVNTLFVQDADRMG-LSQLYQLRGRVGRWNRIAYAYFMYQKDKILR---- 958

Query: 700 AIDETTRR 707
             +E  +R
Sbjct: 959 --EEAEKR 964


>gi|255027042|ref|ZP_05299028.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J2-003]
          Length = 499

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 199/505 (39%), Gaps = 45/505 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MDVDRLFLY-------------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    S  +     +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++ + L EL+++    + Q L + +  DLEML +       + + +Y+    P 
Sbjct: 240 VKRLEKKMMLTLNELKEQ---EDKQALIENLEEDLEMLRSGVKP---DMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +LF+Y+P+++ + +DE    +     + R +   +        R+ +  D +    
Sbjct: 294 --PASLFDYLPKNTAILLDEFGRILETEESLEREEAEWQTETLS---RMETVRDVQVS-- 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +  L    +  + +P  +     + +   ++ + T +V     ++    Q+  +  E+
Sbjct: 347 HSFKKL----LEGNHSPKIYLSLFQKQMASMRVSKTTNIVYKQ--MQQFHGQMNVLKTEL 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    +++       AE + + L + ++    +  E             + G    
Sbjct: 401 ESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVP---------KYGMVQF 451

Query: 636 LVGINLLREGLDIPECGLVAILDAD 660
           ++G    + G ++P   +  I + +
Sbjct: 452 VIGT--FQNGFELPLAKVAIISETE 474


>gi|313621017|gb|EFR92140.1| transcription-repair coupling factor [Listeria innocua FSL S4-378]
          Length = 899

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 196/505 (38%), Gaps = 45/505 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKSQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  IDVDRLFLY-------------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    S  +     +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSVWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +  +++++ + L EL++     + Q L + +  DLEML +       + + +Y+    P 
Sbjct: 240 VTRLEKKMTLTLNELKE---NEDKQALVENLEEDLEMLRSGVKP---DMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +LF+Y+P+++ + +DE    +     + R +   +        R+ +  D +    
Sbjct: 294 --PASLFDYLPKNTAILLDEFARILETEESLEREEAEWQTETLS---RMETVRDVQVS-- 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +  L       + +P  +     + +   ++ + T +V     ++    Q+  +  EI
Sbjct: 347 HSFKKLLDE----NHSPKIYLTLFQKQMASMRVSKTTNIVYKQ--MQQFHGQMNVLKTEI 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    +++       AE + + L + ++    +  E             + G    
Sbjct: 401 ESWHKNNYAVVILAPNLERAEKMQQTLADYDMESTILKKESDVP---------KYGMVQF 451

Query: 636 LVGINLLREGLDIPECGLVAILDAD 660
           ++G    + G ++P   +  I + +
Sbjct: 452 VIGT--FQNGFELPLAKVAIISETE 474


>gi|326790211|ref|YP_004308032.1| transcription-repair coupling factor [Clostridium lentocellum DSM
           5427]
 gi|326540975|gb|ADZ82834.1| transcription-repair coupling factor [Clostridium lentocellum DSM
           5427]
          Length = 1179

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 83/506 (16%), Positives = 192/506 (37%), Gaps = 41/506 (8%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           QLL+ +   E V+++  +  + K      +    ++P +++  ++    Q+  +      
Sbjct: 23  QLLEHLEYGENVKVVN-MIDACKGHFSYGIGCFTEKPLVIITYDEPSTKQISEDMMALNG 81

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
              V  +             P  D         +  I   R     +L +    + +  +
Sbjct: 82  KEKVYIY-------------PARDILFYNADVHSMDITSQRIKVIEALQKGEKAVFIIPI 128

Query: 279 SCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             +   +   E++      ++ G+ +    L   LV+  Y+R       G F + G  I+
Sbjct: 129 EALLNPLSPKETWESYTKIVQAGECINISRLERELVQMGYERVGRVEGMGQFAIRGGIID 188

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           I+   +++  +R+ ++ ++++ I  F   T + I+ VE ++I  N   +     L  A+ 
Sbjct: 189 IYTP-IDEEPYRIELWDDEVDSIRNFNVQTQRSIQKVEALRIVPNQEIIFHLDLLKEAIP 247

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            IKE+LK     L + G+   A ++E+++   ++ ++   S + +E Y  Y + +     
Sbjct: 248 AIKEDLKKTTKALRQAGKKESALKIEEQVGEAIDQIQNDISPRGLEMYIPYTSLKL---- 303

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
             ++ +Y+P+++LL +DE   T  +   +            EYG  LP  +    L FE 
Sbjct: 304 -VSILDYLPKETLLIIDEPIKTKARCERVLEEYGMSMKDRLEYGHILPKQI---QLIFEY 359

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
            + +            ++  E     +   +       +   +       +E +  ++  
Sbjct: 360 EHLIARMETFTKLFLMNFNAEVATFDVAYTLFLKVHENNTFYK------NLELLEKDLKE 413

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +   R+++    K  +  L   L ER +   Y               +++ G+  +L+
Sbjct: 414 WKKDNKRVIILSGVKAKSLRLMSELEERGVIASY---------SENSEEEVKKGQ--ILI 462

Query: 638 GINLLREGLDIPECGLVAILDADKEG 663
              +L +G    + GL  + D D  G
Sbjct: 463 YKGVLEKGFYYEDLGLYIVADKDLFG 488



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 80/193 (41%), Gaps = 14/193 (7%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV----- 568
           E+   LR     + ++ATP    L      I +  +    L + PVE +  +T V     
Sbjct: 774 EKLKQLRTQVDVMNLTATPIPRTLHMSLIGIRDMSV----LEEAPVERKPVQTYVIEYSE 829

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIR 626
           + + D IN    +G ++       +  E+    + E     RV + H ++   E  +I+ 
Sbjct: 830 DFIKDAINRELTRGGQVYFLHNQVKDIEEKAHAIQELIPKARVAFAHGQMSERELEQIML 889

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
               G+ DVLV   ++  GLDI     + +  AD+ G L     L   +GR++R   + +
Sbjct: 890 RFIEGEIDVLVCTTIIETGLDISNANTIIMNHADRMG-LSQLYQLRGRVGRSSRMGYAYL 948

Query: 687 ILYADTITKSIQL 699
           +   D + K +  
Sbjct: 949 MYQKDKVLKEVAE 961



 Score = 38.5 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFT---MAKVIEAMQRPA 196
           F+    Y  +GDQ  AI  + K +   +   +L+ G  G GKT      A       +  
Sbjct: 627 FEAMFPYEETGDQLEAIEDVKKDMESDKIMDRLICGDVGYGKTEVAIRAAFKAVQNSKQV 686

Query: 197 IVMAPNKILAAQLYSEFKNFFPH 219
             + P  ILA Q Y  F      
Sbjct: 687 AYLVPTTILAQQHYQRFAERMAD 709


>gi|47093156|ref|ZP_00230931.1| transcription-repair coupling factor [Listeria monocytogenes str.
           4b H7858]
 gi|47018463|gb|EAL09221.1| transcription-repair coupling factor [Listeria monocytogenes str.
           4b H7858]
          Length = 1179

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 196/505 (38%), Gaps = 45/505 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MDVDRLFLY-------------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    S  +     +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++   L EL++     + Q L + +  DLEML +       + + +Y+    P 
Sbjct: 240 VKRLEKKMTHTLNELKE---NEDKQALVENLEEDLEMLRSGVKP---DMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +LF+Y P+++ + +DE    +     + R +   +        R+ +  D +    
Sbjct: 294 --PASLFDYFPKNTAILLDEFGRILETEESLEREEAEWQTETLS---RMETVRDVQVS-- 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +  L    +  + +P  +     + +   ++ + T +V     ++    Q+  +  E+
Sbjct: 347 HSFKKL----LEANHSPKIYLSLFQKQMASMRVSKTTNIVYKQ--MQQFHGQMNVLKTEL 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    +++       AE + + L + ++    +  E             + G    
Sbjct: 401 ESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESAILKKESDVP---------KYGMVQF 451

Query: 636 LVGINLLREGLDIPECGLVAILDAD 660
           ++G    + G ++P   +  I + +
Sbjct: 452 VIGT--FQNGFELPLAKVAIISETE 474



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 14/188 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+   A      V + I     +  
Sbjct: 775 VLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDG 834

Query: 584 RILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++           + A++++  + +  +     H ++   E   +I     G+FDVLV  
Sbjct: 835 QVYYLYNRVESITQKADEISAMVPDARVATA--HGQMGESELESVILSFLEGEFDVLVTT 892

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G L     L   +GR  R   +  +   D I +    
Sbjct: 893 TIIETGVDIPNVNTLFVQDADRMG-LSQLYQLRGRVGRWNRIAYAYFMYQKDKILR---- 947

Query: 700 AIDETTRR 707
             +E  +R
Sbjct: 948 --EEAEKR 953


>gi|255520464|ref|ZP_05387701.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J1-175]
          Length = 1179

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 196/505 (38%), Gaps = 45/505 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MDVDRLFLY-------------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    S  +     +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++   L EL++     + Q L + +  DLEML +       + + +Y+    P 
Sbjct: 240 VKRLEKKMTHTLNELKE---NEDKQALVENLEEDLEMLRSGVKP---DMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +LF+Y P+++ + +DE    +     + R +   +        R+ +  D +    
Sbjct: 294 --PASLFDYFPKNTAILLDEFGRILETEESLEREEAEWQTETLS---RMETVRDVQVS-- 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +  L    +  + +P  +     + +   ++ + T +V     ++    Q+  +  E+
Sbjct: 347 HSFKKL----LEANHSPKIYLSLFQKQMASMRVSKTTNIVYKQ--MQQFHGQMNVLKTEL 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    +++       AE + + L + ++    +  E             + G    
Sbjct: 401 ESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVP---------KYGMVQF 451

Query: 636 LVGINLLREGLDIPECGLVAILDAD 660
           ++G    + G ++P   +  I + +
Sbjct: 452 VIGT--FQNGFELPLAKVAIISETE 474



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 14/188 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+   A      V + I     +  
Sbjct: 775 VLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDG 834

Query: 584 RILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++           + A++++  + +  +     H ++   E   +I     G+FDVLV  
Sbjct: 835 QVYYLYNRVESITQKADEISAMVPDARVATA--HGQMGESELESVILSFLEGEFDVLVTT 892

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G L     L   +GR  R   +  +   D I +    
Sbjct: 893 TIIETGVDIPNVNTLFVQDADRMG-LSQLYQLRGRVGRWNRIAYAYFMYQKDKILR---- 947

Query: 700 AIDETTRR 707
             +E  +R
Sbjct: 948 --EEAEKR 953


>gi|46906446|ref|YP_012835.1| transcription-repair coupling factor [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|226222843|ref|YP_002756950.1| transcription-repair coupling factor [Listeria monocytogenes
           Clip81459]
 gi|254825872|ref|ZP_05230873.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J1-194]
 gi|254854444|ref|ZP_05243792.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           R2-503]
 gi|254933054|ref|ZP_05266413.1| transcription-repair coupling factor [Listeria monocytogenes
           HPB2262]
 gi|300766347|ref|ZP_07076306.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           N1-017]
 gi|46879710|gb|AAT03012.1| transcription-repair coupling factor [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|225875305|emb|CAS04002.1| transcription-repair coupling factor [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258607844|gb|EEW20452.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           R2-503]
 gi|293584612|gb|EFF96644.1| transcription-repair coupling factor [Listeria monocytogenes
           HPB2262]
 gi|293595111|gb|EFG02872.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J1-194]
 gi|300512946|gb|EFK40034.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           N1-017]
 gi|332310623|gb|EGJ23718.1| Transcription-repair-coupling factor [Listeria monocytogenes str.
           Scott A]
          Length = 1179

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 196/505 (38%), Gaps = 45/505 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MDVDRLFLY-------------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    S  +     +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++   L EL++     + Q L + +  DLEML +       + + +Y+    P 
Sbjct: 240 VKRLEKKMTHTLNELKE---NEDKQALVENLEEDLEMLRSGVKP---DMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +LF+Y P+++ + +DE    +     + R +   +        R+ +  D +    
Sbjct: 294 --PASLFDYFPKNTAILLDEFGRILETEESLEREEAEWQTETLS---RMETVRDVQVS-- 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +  L    +  + +P  +     + +   ++ + T +V     ++    Q+  +  E+
Sbjct: 347 HSFKKL----LEANHSPKIYLSLFQKQMASMRVSKTTNIVYKQ--MQQFHGQMNVLKTEL 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    +++       AE + + L + ++    +  E             + G    
Sbjct: 401 ESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVP---------KYGMVQF 451

Query: 636 LVGINLLREGLDIPECGLVAILDAD 660
           ++G    + G ++P   +  I + +
Sbjct: 452 VIGT--FQNGFELPLAKVAIISETE 474



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 14/188 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+   A      V + I     +  
Sbjct: 775 VLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDG 834

Query: 584 RILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++           + A++++  + +  +     H ++   E   +I     G+FDVLV  
Sbjct: 835 QVYYLYNRVESITQKADEISAMVPDARVATA--HGQMGESELESVILSFLEGEFDVLVTT 892

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G L     L   +GR  R   +  +   D I +    
Sbjct: 893 TIIETGVDIPNVNTLFVQDADRMG-LSQLYQLRGRVGRWNRIAYAYFMYQKDKILR---- 947

Query: 700 AIDETTRR 707
             +E  +R
Sbjct: 948 --EEAEKR 953


>gi|328467970|gb|EGF38997.1| transcription-repair coupling factor [Listeria monocytogenes 1816]
          Length = 1179

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 196/505 (38%), Gaps = 45/505 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MDVDRLFLY-------------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    S  +     +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++   L EL++     + Q L + +  DLEML +       + + +Y+    P 
Sbjct: 240 VKRLEKKMTHTLNELKE---NEDKQALVENLEEDLEMLRSGVKP---DMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +LF+Y P+++ + +DE    +     + R +   +        R+ +  D +    
Sbjct: 294 --PASLFDYFPKNTAILLDEFGRILETEESLEREEAEWQTETLS---RMETVRDVQVS-- 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +  L    +  + +P  +     + +   ++ + T +V     ++    Q+  +  E+
Sbjct: 347 HSFKKL----LEANHSPKIYLSLFQKQMASMRVSKTTNIVYKQ--MQQFHGQMNVLKTEL 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    +++       AE + + L + ++    +  E             + G    
Sbjct: 401 ESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVP---------KYGMVQF 451

Query: 636 LVGINLLREGLDIPECGLVAILDAD 660
           ++G    + G ++P   +  I + +
Sbjct: 452 VIGT--FQNGFELPLAKVAIISETE 474



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 14/188 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+   A      V + I     +  
Sbjct: 775 VLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDG 834

Query: 584 RILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++           + A++++  + +  +     H ++   E   +I     G+FDVLV  
Sbjct: 835 QVYYLYNRVESITQKADEISAMVPDARVATA--HGQMGESELESVILSFLEGEFDVLVTT 892

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G L     L   +GR  R   +  +   D I +    
Sbjct: 893 TIIETGVDIPNVNTLFVQDADRMG-LSQLYQLRGRVGRWNRIAYAYFMYQKDKILR---- 947

Query: 700 AIDETTRR 707
             +E  +R
Sbjct: 948 --EEAEKR 953


>gi|218290671|ref|ZP_03494762.1| transcription-repair coupling factor [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239336|gb|EED06534.1| transcription-repair coupling factor [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 1183

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 103/570 (18%), Positives = 209/570 (36%), Gaps = 68/570 (11%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKILAAQLYS 211
           A++ L  G+  R+   L+ GVTG+G+   MA +       +    IV+      A  ++ 
Sbjct: 13  ALSSLADGMGPRKNDMLITGVTGAGRQLVMAALYHLRNRRLPESMIVVTHTASHAQTIWE 72

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           + K + P   V  +             P  D  +    + +  +   R     +L +   
Sbjct: 73  DLKEYLPDARVYLY-------------PERDNALVDYLASSSDVLADRLHVLEALAQEGP 119

Query: 272 CIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            +VV+++ +    +     +   +V L +G+S    ++++ LV+  Y+R ++   RG F 
Sbjct: 120 VVVVTTLLAAWQPVTKKSHFLHSLVNLAVGESKPIDDVVAQLVRGGYERVNLVESRGQFS 179

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V G  +++FP    D+ +R+  F  DI+ I  F P T +     + +        + P+P
Sbjct: 180 VRGGILDVFPMGH-DLPYRIEWFDTDIDSIRTFDPATQRSQDKRDRVSFGPAFDLMLPQP 238

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
             +     ++  L+ RL  +          RLEQ I+ D+  L        +  Y     
Sbjct: 239 VADKVADELEARLEARLKTVTDAAL---RDRLEQSISADIRKLREGQPFAGVARYQLLYP 295

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD- 509
                E   TLF+++P+ + +  DE+   + +   + +      +     G  L   +D 
Sbjct: 296 -----EHADTLFDHVPQPTFVCFDETARILERADVLEKEFREWLSGAIMRGEVLSGTVDA 350

Query: 510 -NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
            +   +F+E N  +      + T GS   +Q   I    +    G             Q+
Sbjct: 351 IHYEAKFQELNRPKVHFATFAHTRGSQRYQQVLNISARSMQNFHG-------------QM 397

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             +  E+    +   +++    TK  A+ L   L +  I+              + +   
Sbjct: 398 NVLKQELARWEKAHTQVVFAAATKERADHLARVLDDYRIQA-------------DQVEIF 444

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-------- 680
             G     + +  L  G ++P   +  I++ +      +K    QT  + +         
Sbjct: 445 TPGSKVPQIVVANLSSGFELPMHRIAVIVETEVF---TAKRKHRQTRAQVSDAERIKSYQ 501

Query: 681 --NVNSKVILYADTITKSIQLAIDETTRRR 708
             NV   V+     I + + +   E   RR
Sbjct: 502 ELNVGDYVVHVNHGIGRYMGIKTLEVDGRR 531



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 94/252 (37%), Gaps = 19/252 (7%)

Query: 525  TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
             + ++ATP    L     G+    II        PV+   +      V++  +       
Sbjct: 777  CLTLTATPIPRTLHMSMLGVRDLSIIETPPENRFPVQTYVVEYNEGLVKEAIERELARGG 836

Query: 581  QGLRILLTVLT-KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            Q   +   V T  RMAE +   + +  + V   H ++   E   ++ D   G++DVLV  
Sbjct: 837  QVYFVYNDVQTIHRMAERVQSLVPDARVSVA--HGQMAEAELERVMLDFLEGEYDVLVTT 894

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + + DADK G  +    L Q  GR  R+       +     K    
Sbjct: 895  TIIETGLDIPNVNTLIVYDADKFGLSQ----LYQLRGRVGRSNRIAYAYFTYQPAK---- 946

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEV-IDPILLEDAATTNISIDAQQLSLSKK 758
             + E   +R   ++   +        K  + ++ I        A  +  I++    +  +
Sbjct: 947  VLSEVAEKRLAAIKEFTELG---SGFKIAMRDLSIRGAGNLLGAEQHGFINSVGFDMYTE 1003

Query: 759  KGKAHLKSLRKQ 770
              +  ++ LR +
Sbjct: 1004 LLQQAIRELRGE 1015



 Score = 44.3 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 14/138 (10%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           ++T+   ++++      L +L          G  ++P   W  +        F+    Y 
Sbjct: 577 QKTKNRVKKSVRDIAGDLLKLYAKR--EATPGHAFSPDTPWQAD--------FENMFPYE 626

Query: 149 PSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKI 204
            + DQ  AIA++ + +   R   +LL G  G GKT   M    +A+   +   V+ P  +
Sbjct: 627 ETPDQLRAIAEIKRDMEKPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLVPTTV 686

Query: 205 LAAQLYSEFKNFFPHNAV 222
           LA Q Y  FK  F    V
Sbjct: 687 LAQQHYETFKERFAGFPV 704


>gi|290894278|ref|ZP_06557245.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J2-071]
 gi|290556162|gb|EFD89709.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J2-071]
          Length = 1179

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 86/505 (17%), Positives = 197/505 (39%), Gaps = 45/505 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MDVDRLFLY-------------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    S  +     +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++   L EL++     + Q L + +  DLEML +       + + +Y+    P 
Sbjct: 240 VKRLEKKMTHTLNELKE---NEDKQALVENLEEDLEMLRSGVKP---DMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +LF+Y+P+++ + +DE    +     + R +   +        R+ +  D +    
Sbjct: 294 --PASLFDYLPKNTAILLDEFGRILETEESLEREEAEWQTETLS---RMETVRDVQVS-- 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +  L    +  + +P  +     + +   ++ + T +V     ++    Q+  +  E+
Sbjct: 347 HSFKKL----LEANHSPKIYLSLFQKQMASMRVSKTTNIVYKQ--MQQFHGQMNVLKTEL 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    I++       AE + + L + ++    +  E             + G    
Sbjct: 401 ESWHKNNYAIVILAPNIERAEKMQQTLADYDMESTILKKESDVP---------KYGMVQF 451

Query: 636 LVGINLLREGLDIPECGLVAILDAD 660
           ++G    + G ++P   +  I + +
Sbjct: 452 VIGT--FQNGFELPLAKVAIISETE 474



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 14/188 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+   A      V + I     +  
Sbjct: 775 VLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDG 834

Query: 584 RILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++           + A++++  + +  +     H ++   E   +I     G+FDVLV  
Sbjct: 835 QVYYLYNRVESITQKADEISAMVPDARVATA--HGQMGESELEAVILSFLEGEFDVLVTT 892

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G L     L   +GR  R   +  +   D I +    
Sbjct: 893 TIIETGVDIPNVNTLFVQDADRMG-LSQLYQLRGRVGRWNRIAYAYFMYQKDKILR---- 947

Query: 700 AIDETTRR 707
             +E  +R
Sbjct: 948 --EEAEKR 953


>gi|257886022|ref|ZP_05665675.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,501]
 gi|257821878|gb|EEV49008.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,501]
          Length = 1173

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 96/520 (18%), Positives = 196/520 (37%), Gaps = 47/520 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + + +  +  +   QL+ G+ GS KT   A+  +   +  I++ PN   A QL  + ++ 
Sbjct: 13  VKEWVSNLEEKMPRQLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHV 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P + +  F             P  +    + +  + +    R +   +L E+   I + 
Sbjct: 73  IPQDQIHLF-------------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLL 119

Query: 277 SVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   + + +++ Q  +   IGD ++ + L   L    Y R+++    G F + G  
Sbjct: 120 PVASLHKRLPNKKTWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSI 179

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P        RV +F  +I+ +  F   T + I   E I +   S  V     L   
Sbjct: 180 IDIYPLTT-TYPVRVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHG 238

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ +++ L+ RL    +E      Q    R+T      +     +  + YS  L      
Sbjct: 239 IEQMQKMLEKRLAATTEEADREFLQDYFGRLT---SSWQAGVPTEEAKFYSDLLY----- 290

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           +   T+ +Y P +SLL VD+    +     + R     +        R+ S         
Sbjct: 291 QESVTILDYFPSNSLLVVDDYQRIMETNREIEREAAEWQTQKIS-ELRVFSEQTFSADIQ 349

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           +     + TT   S        ++  G +  Q I           ++    Q+  +  E+
Sbjct: 350 KIVQKEKFTTTFFSL------FQKGMGDLRFQAIHNFQYR----TMQQFFGQMPLLKTEM 399

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   +Q   +++ + TK       + L + +I V  + +E   L R             V
Sbjct: 400 DRWRKQKQTVVIFIPTKDRIRKAEQMLRDEDILV--VETEKNALIR-----------GQV 446

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            +    L+ G ++P+  +VAI + +       K +  QT+
Sbjct: 447 QLVEGALQAGFELPQEKIVAITEKEIFQKTTKKQTRRQTV 486



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPIQTYVMEKNPGAIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I+    +G ++          E   E + E     R  Y H ++   +    + +   
Sbjct: 821 EAIHREMGRGGQVFYLYNRVETIEQKVEEIQELVPEARIGYAHGQMTEAQLENTLFEFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++DVLV   ++  G+DIP    + + +AD  G L +   L   +GR++R      + YA
Sbjct: 881 GQYDVLVATTIIETGVDIPNANTLFVENADYMG-LSTLYQLRGRVGRSSR------VAYA 933

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
             + +  Q  ++E + +R + ++
Sbjct: 934 YFMYEQ-QKILNEVSEKRLQAIK 955


>gi|258510200|ref|YP_003183634.1| transcription-repair coupling factor [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257476926|gb|ACV57245.1| transcription-repair coupling factor [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 1183

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 103/570 (18%), Positives = 207/570 (36%), Gaps = 68/570 (11%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKILAAQLYS 211
           A++ L  G+  R    L+ GVTG+G+   MA +       +    IV+      A  ++ 
Sbjct: 13  ALSSLADGMGPRRNDILITGVTGAGRQLVMAALYHLRNRRLPESMIVVTHTASHAQTIWE 72

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           + K + P   V  +             P  D  +    + +  +   R     +L +   
Sbjct: 73  DLKEYLPDARVYLY-------------PERDNALVDYLASSSDVLADRLHVLEALAQEGP 119

Query: 272 CIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            +VV+++ +    +     +   +V L +G+S    ++++ LV+  Y+R  +   RG F 
Sbjct: 120 VVVVTTLLAAWQPVTKKSHFLHSLVNLAVGESKPIDDVVAQLVRGGYERVSLVESRGQFS 179

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V G  +++FP    D+ +R+  F  DI+ I  F P T +     + +        + P+P
Sbjct: 180 VRGGILDVFPMGH-DLPYRIEWFDTDIDSIRTFDPATQRSQDKRDRVSFGPAFDLMLPQP 238

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
             +     ++  L+ RL  +          RLEQ I+ D+  L        +  Y     
Sbjct: 239 VADKVADELEARLEARLKTVTDAAL---RDRLEQSISADIRKLREGQPFAGVARYQLLYP 295

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD- 509
                E   TLF+++P+ + +  DE+   + +   + +      +     G  L   +D 
Sbjct: 296 -----EHADTLFDHVPQPAFVCFDETARILERADVLEKEFREWLSGAMMRGEVLSGTVDA 350

Query: 510 -NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
            +   +F+E N  +      + T GS   +Q   I    +    G             Q+
Sbjct: 351 IHYEAKFQELNRPKVHFATFAHTRGSQRYQQVLNISARSMQNFHG-------------QM 397

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             +  E+    +   +++    TK  A+ L   L +  I+              + +   
Sbjct: 398 NVLKQELARWEKAHTQVVFAAATKERADHLARVLDDYRIQA-------------DQVEVF 444

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-------- 680
             G     + +  L  G ++P   +  I++ +      +K    QT  + +         
Sbjct: 445 TPGSKVPQIVVANLSSGFELPMHRIAVIVETEVF---TAKRKHRQTRAQVSDAERIKSYQ 501

Query: 681 --NVNSKVILYADTITKSIQLAIDETTRRR 708
             NV   V+     I + + +   E   RR
Sbjct: 502 ELNVGDYVVHVNHGIGRYMGIKTLEVDGRR 531



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 94/252 (37%), Gaps = 19/252 (7%)

Query: 525  TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
             + ++ATP    L     G+    II        PV+   +      V++  +       
Sbjct: 777  CLTLTATPIPRTLHMSMLGVRDLSIIETPPENRFPVQTYVVEYNEGLVKEAIERELARGG 836

Query: 581  QGLRILLTVLT-KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            Q   +   V T  RMAE +   + +  + V   H ++   E   ++ D   G++DVLV  
Sbjct: 837  QVYFVYNDVQTIHRMAERVQSLVPDARVSVA--HGQMAEAELERVMLDFLEGEYDVLVTT 894

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + + DADK G  +    L Q  GR  R+       +     K    
Sbjct: 895  TIIETGLDIPNVNTLIVYDADKFGLSQ----LYQLRGRVGRSNRIAYAYFTYQPAK---- 946

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEV-IDPILLEDAATTNISIDAQQLSLSKK 758
             + E   +R   ++   +        K  + ++ I        A  +  I++    +  +
Sbjct: 947  VLSEVAEKRLAAIKEFTELG---SGFKIAMRDLSIRGAGNLLGAEQHGFINSVGFDMYTE 1003

Query: 759  KGKAHLKSLRKQ 770
              +  ++ LR +
Sbjct: 1004 LLQQAIRELRGE 1015



 Score = 44.3 bits (103), Expect = 0.088,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 14/138 (10%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           ++T+   ++++      L +L          G  ++P   W  +        F+    Y 
Sbjct: 577 QKTKNRVKKSVRDIAGDLLKLYAKR--EATPGHAFSPDTPWQAD--------FENMFPYE 626

Query: 149 PSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKI 204
            + DQ  AIA++ + +   R   +LL G  G GKT   M    +A+   +   V+ P  +
Sbjct: 627 ETPDQLRAIAEIKRDMEKPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLVPTTV 686

Query: 205 LAAQLYSEFKNFFPHNAV 222
           LA Q Y  FK  F    V
Sbjct: 687 LAQQHYETFKERFAGFPV 704


>gi|16799323|ref|NP_469591.1| transcription-repair coupling factor [Listeria innocua Clip11262]
 gi|16412675|emb|CAC95479.1| transcription-repair coupling factor [Listeria innocua Clip11262]
          Length = 1179

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 196/505 (38%), Gaps = 45/505 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKSQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  IDVDRLFLY-------------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    S  +     +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +  +++++ + L EL++     + Q L + +  DLEML +       + + +Y+    P 
Sbjct: 240 VTRLEKKMTLTLNELKE---NEDKQALVENLEEDLEMLRSGVKP---DMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +LF+Y+P+++ + +DE    +     + R +   +        R+ +  D +    
Sbjct: 294 --PASLFDYLPKNTAILLDEFARILETEESLEREEAEWQTETLS---RMETVRDVQVS-- 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +  L       + +P  +     + +   ++ + T +V     ++    Q+  +  EI
Sbjct: 347 HSFKKLLDE----NHSPKIYLTLFQKQMASMRVSKTTNIVYKQ--MQQFHGQMNVLKTEI 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    +++       AE + + L + ++    +  E             + G    
Sbjct: 401 ESWHKNNYAVVILAPNLERAEKMQQTLADYDMESTILKKESDVP---------KYGMVQF 451

Query: 636 LVGINLLREGLDIPECGLVAILDAD 660
           ++G    + G ++P   +  I + +
Sbjct: 452 VIGT--FQNGFELPLAKVAIISETE 474



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 14/188 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+   A      V + I     +  
Sbjct: 775 VLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDG 834

Query: 584 RILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++           + A++++  + +  +     H ++   E   +I     G+FDVLV  
Sbjct: 835 QVYYLYNRVESITQKADEISAMVPDARVATA--HGQMGESELESVILSFLEGEFDVLVTT 892

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G L     L   +GR  R   +  +   D I +    
Sbjct: 893 TIIETGVDIPNVNTLFVQDADRMG-LSQLYQLRGRVGRWNRIAYAYFMYQKDKILR---- 947

Query: 700 AIDETTRR 707
             +E  +R
Sbjct: 948 --EEAEKR 953


>gi|217965700|ref|YP_002351378.1| transcription-repair coupling factor [Listeria monocytogenes HCC23]
 gi|217334970|gb|ACK40764.1| transcription-repair coupling factor [Listeria monocytogenes HCC23]
 gi|307569753|emb|CAR82932.1| transcription-repair coupling factor [Listeria monocytogenes L99]
          Length = 1179

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 197/505 (39%), Gaps = 45/505 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MDVDRLFLY-------------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    S  +     +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++   L EL++     + Q L + +  DLEML +       + + +Y+    P 
Sbjct: 240 VKRLEKKMTHTLNELKE---NEDKQALVENLEEDLEMLRSGVKP---DMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +LF+Y+P+++ + +DE    +     + R +   +        R+ +  D +    
Sbjct: 294 --PASLFDYLPKNTAILLDEFGRILETEESLEREEAEWQTETLS---RMETVRDVQVS-- 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +  L    +  + +P  +     + +   ++ + T +V     ++    Q+  +  E+
Sbjct: 347 HSFKKL----LEANHSPKIYLSLFQKQMASMRVSKTTNIVYKQ--MQQFHGQMNVLKTEL 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    +++       AE + + L + ++    +  E             + G    
Sbjct: 401 ESWHKNNYAVVILAPNVERAEKMQQTLADYDMESTILKKESDVP---------KYGMVQF 451

Query: 636 LVGINLLREGLDIPECGLVAILDAD 660
           ++G    + G ++P   +  I + +
Sbjct: 452 VIGT--FQNGFELPLAKVAIISETE 474



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 14/188 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+   A      V + I     +  
Sbjct: 775 VLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDG 834

Query: 584 RILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++           + A++++  + +  +     H ++   E   +I     G+FDVLV  
Sbjct: 835 QVYYLYNRVESITQKADEISAMVPDARVATA--HGQMGESELEAVILSFLEGEFDVLVTT 892

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G L     L   +GR  R   +  +   D I +    
Sbjct: 893 TIIETGVDIPNVNTLFVQDADRMG-LSQLYQLRGRVGRWNRIAYAYFMYQKDKILR---- 947

Query: 700 AIDETTRR 707
             +E  +R
Sbjct: 948 --EEAEKR 953


>gi|126653275|ref|ZP_01725386.1| transcription-repair coupling factor [Bacillus sp. B14905]
 gi|126589949|gb|EAZ84078.1| transcription-repair coupling factor [Bacillus sp. B14905]
          Length = 1169

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 89/521 (17%), Positives = 181/521 (34%), Gaps = 51/521 (9%)

Query: 157 IAQLLKGIHSREKV-QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           I   L+ I S +   QL+ G+TGS +   +  + E +++P  +++PN + A ++  E   
Sbjct: 14  ITSFLQEIQSGQTASQLITGLTGSARPVMVDALFEYVKKPIYIVSPNLLQAQRMVDELAG 73

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
                 V Y+             P  +      S  + ++   R +    L      + V
Sbjct: 74  LLGEENVHYY-------------PADEFIAADLSVASPELRAERIATLDCLARGEKAVYV 120

Query: 276 SSVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
             V+ +  I    E +    +Q  +GD +E    L +LV+  Y R  +    G F + G 
Sbjct: 121 IPVAGLRKIMQPKEHWLHYFLQTTVGDEIEVDAWLQTLVEMGYVRNSMVTTPGEFALRGG 180

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++I+P +LE    R+ +F  +++ I  F     + I  ++ I+I   S  +  +     
Sbjct: 181 ILDIYPPYLES-PIRIELFDTEVDSIRTFSADDQRSIDKLQKIRILPASEVILTKSERQN 239

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
               +++ L   L +++   +    + L Q I YD+E+L+       +  Y   L     
Sbjct: 240 LADRLEKALAASLKKVK---KQETKELLYQHIQYDIELLQQGNLPDYVNKYGSLLY---- 292

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
            +    L +Y  +D ++  DE       +    R +     +L E G  +        L+
Sbjct: 293 -DKTAFLGDYFAQDGIVLFDELGRIQEVMDAWEREEEEWFLSLIEEGKMVHDVKPAFTLK 351

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            E    L    +  S                  I            ++    Q+  +  E
Sbjct: 352 -EIVAMLSQQKLSFSL----------FSRTFSGITFNKTTNFSCKPMQQFHGQMALLQSE 400

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I         +L+    K   + + + L E +I    +                      
Sbjct: 401 IERWLLGKFTVLIVARDKERVKRVQQMLEEYDIHAA-IGEPTDAG--------------- 444

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + +   +L  G ++P   L  + + +       K +  Q +
Sbjct: 445 IYIVDGVLSSGFELPLQRLAIVTEDELFKQQAKKKARTQKM 485



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 14/189 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 771 VLTLTATPIPRTLHMSMVGVRDLSVIETPPANRFPVQTYVMEHSGALVREAIEREMARGG 830

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV-----RYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++          ED+   + E  + V      + H ++   E   +I     G +DVLV 
Sbjct: 831 QVFYLY---NRVEDMARKVEEIQVLVPEARIGHAHGKMSESELESVILSFLEGDYDVLVT 887

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DIP    + + DAD+ G  +    L   +GR+ R   +  +   D +   + 
Sbjct: 888 TTIIETGVDIPNVNTLIVHDADRMGLAQ-LYQLRGRVGRSNRVAYAYFMYQRDKVLTDVA 946

Query: 699 L----AIDE 703
                AI E
Sbjct: 947 EQRLQAIKE 955


>gi|313625455|gb|EFR95204.1| transcription-repair coupling factor [Listeria innocua FSL J1-023]
          Length = 899

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 83/505 (16%), Positives = 194/505 (38%), Gaps = 45/505 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKSQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  IDVDKLFLY-------------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    S  +     +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +  +++++ + L EL++     + Q   + +  DLE L +       + + +Y+    P 
Sbjct: 240 VTRLEKKMTLTLNELKE---NEDKQXXVENLEEDLEKLRSGVKP---DMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +LF+Y+P+++ + +DE    +     + R +   +        R+ +  D +    
Sbjct: 294 --PASLFDYLPKNTAILLDEFARILETEESLEREEAEWQTETLS---RMETVRDVQVS-- 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +  L       + +P  +     + +   ++ + T +V     ++    Q+  +  EI
Sbjct: 347 HSFKKLLDE----NHSPKIYLTLFQKQMASMRVSKTTNIVYKQ--MQQFHGQMNVLKTEI 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    +++       AE + + L + ++    +  E             + G    
Sbjct: 401 ESWHKNNYAVVILAPNLERAEKMQQTLADYDMESTILKKESDVP---------KYGMVQF 451

Query: 636 LVGINLLREGLDIPECGLVAILDAD 660
           ++G    + G ++P   +  I + +
Sbjct: 452 VIGT--FQNGFELPLAKVAIISETE 474


>gi|313902509|ref|ZP_07835910.1| transcription-repair coupling factor [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467195|gb|EFR62708.1| transcription-repair coupling factor [Thermaerobacter subterraneus
           DSM 13965]
          Length = 1196

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 101/518 (19%), Positives = 190/518 (36%), Gaps = 55/518 (10%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q      L  G+      Q + G+ G      +A +  A  R   ++   +  A  L ++
Sbjct: 19  QLPEFPSLAGGVRRELPAQAVYGLGGPAAASLLAALAAATGRTLFILTAEQGAADALAAD 78

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            + + P   V  F             P  +    +  + + ++  +R  A   L +    
Sbjct: 79  LRAWVPAERVVVF-------------PAIEVLPFEVLAASPELMALRLEALARLRQGPCL 125

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V    +    +   E ++  +++L+ G  +++ +LL+ LV   Y+R +     G   V 
Sbjct: 126 VVAPVAAVARRLPHPERWAAGLIELEPGQVMDRDDLLTRLVAAGYQRAEQVDRPGELAVR 185

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++++P   E    R+  FG++I+ +  F P T +    +E +++      V    + 
Sbjct: 186 GGIVDVYPPAGE--PVRIEFFGDEIDSLRRFDPGTQRSTGTLERVRLAPARELVLDEASW 243

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              +  +  EL   L +  +  R   A++L  R+  DL  LE   S +  E+Y  +    
Sbjct: 244 RRGLAALAAELDS-LRDQTRHRRGGAARQLLDRLEQDLVRLEAERSIELAEHYLPFFEPE 302

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                  TL +Y P  +L    E       ++   R    R+A L   G  LP+      
Sbjct: 303 M-----ATLLDYAPGPALAVWVEPRSLEEAVADRERQWQERQADLLSRGEILPAQAALYL 357

Query: 513 LRFEEWNCLRPTTIVV----SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA---R 565
                W  L    ++     +  PG       QG    Q+         PV  R A    
Sbjct: 358 DEPALWGALASRPVLYLSVLARAPG-------QGPEPRQV--------YPVTARPAPMFH 402

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            Q +   +E+    +Q  R+LL       A  L + L + ++  R          ++E +
Sbjct: 403 GQWDLFEEEVRTWQRQQYRVLLVAGDGDRAGRLRQALLDADVAAR----------QVERL 452

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                G+  VLV    L EG ++P    V + + +  G
Sbjct: 453 TLPAPGE--VLVAPAALSEGFEVPALRWVVLTEREVLG 488



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 62/176 (35%), Gaps = 11/176 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI     I        PV+          V D I    ++G 
Sbjct: 789 VLTLSATPIPRTLHMALAGIRDLSRIDTPPENRFPVQTFVVEWHESLVRDAIQRELRRGG 848

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +        L   L E    V   H ++   E   ++ D   GK DVLV  
Sbjct: 849 QVFYVHNRVQSIHAVRRRLERLLPEARFAVA--HGQMAEGELERVMVDFMEGKADVLVCT 906

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            ++  GLDIP    + + DAD+ G  +    L Q  GR  R+       +     K
Sbjct: 907 TIIESGLDIPNVNTLIVEDADRMGLAQ----LYQLRGRVGRSDRVAYAYFTYRRDK 958



 Score = 38.5 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 12/107 (11%)

Query: 120 GKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTG 178
           G  ++P   W           F+    Y  + DQ AAIA +   +       +LL+G  G
Sbjct: 618 GHAFSPDTPWQRQ--------FEDAFPYQETPDQLAAIAAIKADMERPVPMDRLLVGDVG 669

Query: 179 SGKT-FTMAKVIEAMQ--RPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            GKT   M    +A+Q  +   V+ P  +LA Q    FK  F    V
Sbjct: 670 FGKTEVAMRAAFKAVQDGKQVAVLVPTTVLAYQHERTFKERFAPFPV 716


>gi|116871596|ref|YP_848377.1| transcription-repair coupling factor [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|116740474|emb|CAK19594.1| transcription-repair coupling factor [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 1179

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 83/505 (16%), Positives = 196/505 (38%), Gaps = 45/505 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKSQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MDVDRLFLY-------------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    S  +     +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIIIDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ +++++ + L EL++     + Q L + +  DLE L +       + + +Y+    P 
Sbjct: 240 VQRLEKKMMLTLNELKE---NEDKQALVENLEEDLEKLRSGTKP---DMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +LF+Y+P+++ + +DE    +     + R +   +        R+ +  D +    
Sbjct: 294 --PASLFDYLPKNTAILLDEFARILETEESLEREEAEWQTETLS---RMETVRDVQVS-- 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +  L       + +P  +     + +   ++ + T +V     ++    Q+  +  E+
Sbjct: 347 HSFKKLLDE----NHSPKIYLTLFQKQMAGMRVSKTTNIVYKQ--MQQFHGQMNVLKTEL 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    +++       AE + + L + ++    +  E             + G    
Sbjct: 401 ESWHKNNYAVVILAPNLERAEKMQQTLADYDMESTILKKESDVP---------KYGMVQF 451

Query: 636 LVGINLLREGLDIPECGLVAILDAD 660
           ++G    + G ++P   +  I + +
Sbjct: 452 VIGT--FQNGFELPLAKVAIISETE 474



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 14/188 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+   A      V + I     +  
Sbjct: 775 VLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDG 834

Query: 584 RILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++           + A++++  + +  +     H ++   E   +I     G+FDVLV  
Sbjct: 835 QVYYLYNRVESITQKADEISAMVPDARVATA--HGQMGESELESVILSFLEGEFDVLVTT 892

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G L     L   +GR  R   +  +   D I +    
Sbjct: 893 TIIETGVDIPNVNTLFVQDADRMG-LSQLYQLRGRVGRWNRIAYAYFMYQKDKILR---- 947

Query: 700 AIDETTRR 707
             +E  +R
Sbjct: 948 --EEAEKR 953


>gi|314937290|ref|ZP_07844632.1| transcription-repair coupling factor [Staphylococcus hominis subsp.
           hominis C80]
 gi|313654586|gb|EFS18336.1| transcription-repair coupling factor [Staphylococcus hominis subsp.
           hominis C80]
          Length = 1169

 Score =  220 bits (560), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 90/505 (17%), Positives = 191/505 (37%), Gaps = 74/505 (14%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
             +  L+ G++ S K   +A+      +  +++  N   A +L ++   +  H+ V  + 
Sbjct: 23  GNQNILVTGLSPSAKATIIAEKYLNNDKQMLLITNNLYQADKLETDILQYIDHSEVYKY- 81

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L      + +  ++ +   + 
Sbjct: 82  ------------PVQDIMTEEFSTQSPQLMSERVRTLTALSHDKKGLFIVPLNGLKKWLT 129

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++GD ++  E L+ LV   Y+R+ +    G F + G  I+I+P   + 
Sbjct: 130 PVELWKHHQMTLEVGDDIDVDEFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIGQ- 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +++ I +F   T +   NVE + I   S Y+     +N     +++  + 
Sbjct: 189 -PVRIELFDTEVDSIRDFDVETQRSNDNVEKVDITTASDYIITEDVINHLQTELQKAYEQ 247

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 + P T
Sbjct: 248 TRPKIDKSVRNDLKETYESFKLFESTFFDHQLLRRLVAFMY--------------DTPST 293

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           L +Y  +D+++ VDE +        +          L E G           + ++ +  
Sbjct: 294 LIDYFQKDAIVVVDEYNRIKETEKTLTTEVDDFIQNLIESGNGFIGQS---FMEYDGFET 350

Query: 521 LRPT------TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           L         T+  S+ P          + ++ II+ +        ++    Q + +  E
Sbjct: 351 LINHYPVTYFTLFTSSMP----------VKLQHIIKFSCKP-----VQQFYGQYDIMRSE 395

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVKTLERIEIIRDLRLGKF 633
                     I++ V T+   E +   L E +I  V  +HSE+++               
Sbjct: 396 FQRYVSNNYTIVVLVETETKVERIQSMLNEMHIPTVINIHSEIES--------------G 441

Query: 634 DVLVGINLLREGLDIPECGLVAILD 658
             +V    L EG ++P   LV I +
Sbjct: 442 QAIVTEGSLSEGFELPYMQLVVITE 466



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 67/184 (36%), Gaps = 11/184 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +  
Sbjct: 770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRDG 829

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + E NI V   H ++   +  E +     G++D+LV  
Sbjct: 830 QVFYLYNKVQSIYEKREQLQMLMPEANIAVA--HGQMTERDLEETMLSFINGEYDILVTT 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I +AD  G  +    L Q  GR  R+       +  +  K +  
Sbjct: 888 TIIETGVDVPNANTLIIEEADHFGLSQ----LYQLRGRVGRSSRIGYAYFLHSTNKVLTE 943

Query: 700 AIDE 703
             +E
Sbjct: 944 TAEE 947


>gi|254829305|ref|ZP_05233992.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           N3-165]
 gi|258601718|gb|EEW15043.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           N3-165]
          Length = 1179

 Score =  220 bits (560), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 197/505 (39%), Gaps = 45/505 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MDVDRLFLY-------------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    S  +     +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++   L EL++     + Q L + +  DLEML +       + + +Y+    P 
Sbjct: 240 VKRLEKKMTHTLNELKE---NEDKQALVENLEEDLEMLRSGVKP---DMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +LF+Y+P+++ + +DE    +     + R +   +        R+ +  D +    
Sbjct: 294 --PASLFDYLPKNTAILLDEFGRILETEESLEREEAEWQTETLS---RMETVRDVQVS-- 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +  L    +  + +P  +     + +   ++ + T +V     ++    Q+  +  E+
Sbjct: 347 HSFKKL----LEGNHSPKIYLSLFQKQMASMRVSKTTNIVYKQ--MQQFHGQMNVLKTEL 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    +++       AE + + L + ++    +  E             + G    
Sbjct: 401 ESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVP---------KYGMVQF 451

Query: 636 LVGINLLREGLDIPECGLVAILDAD 660
           ++G    + G ++P   +  I + +
Sbjct: 452 VIGT--FQNGFELPLAKVAIISETE 474



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 14/188 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+   A      V + I     +  
Sbjct: 775 VLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDG 834

Query: 584 RILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++           + A++++  + +  +     H ++   E   +I     G+FDVLV  
Sbjct: 835 QVYYLYNRVESITQKADEISAMVPDARVATA--HGQMGESELESVILSFLEGEFDVLVTT 892

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G L     L   +GR  R   +  +   D I +    
Sbjct: 893 TIIETGVDIPNVNTLFVQDADRMG-LSQLYQLRGRVGRWNRIAYAYFMYQKDKILR---- 947

Query: 700 AIDETTRR 707
             +E  +R
Sbjct: 948 --EEAEKR 953


>gi|257888639|ref|ZP_05668292.1| transcription-repair coupling factor [Enterococcus faecium
           1,141,733]
 gi|257824693|gb|EEV51625.1| transcription-repair coupling factor [Enterococcus faecium
           1,141,733]
          Length = 1173

 Score =  219 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 93/520 (17%), Positives = 195/520 (37%), Gaps = 47/520 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + + +  +  +   QL+ G+ GS KT   A+  +   +  I++ PN   A QL  + ++ 
Sbjct: 13  VKEWISNLEEKMPRQLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHV 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P + +  F             P  +    + +  + +    R +   +L E+   I + 
Sbjct: 73  IPQDQIHLF-------------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLL 119

Query: 277 SVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   + + +++ Q  +   +GD ++ + L   L    Y R+++    G F + G  
Sbjct: 120 PVAALHKRLPNKKTWLQAQLNWHVGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSI 179

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P    +   RV +F  +I+ +  F   T + I   E I +   S  V     L   
Sbjct: 180 VDIYPLTT-NYPIRVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHG 238

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ +++ L+ RL    +E      Q    ++T      +     +  + YS  L      
Sbjct: 239 IEQMQKMLEKRLAATTEEADREFLQDYFGQMT---SSWQAGIPTEEAKFYSDLLY----- 290

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           +   T+ +Y P +SLL VD+    +     + R              R+ S         
Sbjct: 291 QEFVTILDYFPSNSLLVVDDYQRIMETNREIEREAAEWHTQKIS-ELRVFSEQSFSADVQ 349

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                 + TT   S        ++  G +  Q I           ++    Q+  +  E+
Sbjct: 350 RIVQKEKFTTTFFSL------FQKGMGNLRFQAIHNFQYR----TMQQFFGQMPLLKTEM 399

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   +Q   +++ + TK       + L + +I V  + +E   L R             V
Sbjct: 400 DRWRKQKQTVVIFIPTKDRIRKAEQMLRDEDILV--VETEKNALIR-----------GQV 446

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            +    L+ G ++P+  +VAI + +       K +  QT+
Sbjct: 447 QLVEGALQAGFELPQEKIVAITEKEIFQKTTKKQTRRQTV 486



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPIQTYVMEKNPGAIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I+    +G ++          E   E + E     R  Y H ++   +    + +   
Sbjct: 821 EAIHREMGRGGQVFYLYNRVETIEQKVEEIQELVPEARIGYAHGQMTEAQLENTLFEFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++DVLV   ++  G+DIP    + + +AD  G L +   L   +GR++R      + YA
Sbjct: 881 GQYDVLVTTTIIETGVDIPNANTLFVENADYMG-LSTLYQLRGRVGRSSR------VAYA 933

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
             + +  Q  ++E + +R + ++
Sbjct: 934 YFMYEQ-QKILNEVSEKRLQAIK 955


>gi|254832465|ref|ZP_05237120.1| transcription-repair coupling factor [Listeria monocytogenes
           10403S]
          Length = 1179

 Score =  219 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 199/505 (39%), Gaps = 45/505 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MDVDRLFLY-------------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    S  +     +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNVSIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++ + L EL+++    + Q L + +  DLEML +       + + +Y+    P 
Sbjct: 240 VKRLEKKMMLTLNELKEQ---EDKQALIENLEEDLEMLRSGVKP---DMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +LF+Y+P+++ + +DE    +     + R +   +        R+ +  D +    
Sbjct: 294 --PASLFDYLPKNTAILLDEFGRILETEESLEREEAEWQTETLS---RMETVRDVQVS-- 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +  L    +  + +P  +     + +   ++ + T +V     ++    Q+  +  E+
Sbjct: 347 HSFKKL----LEGNHSPKIYLSLFQKQMASMRVSKTTNIVYKQ--MQQFHGQMNVLKTEL 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    +++       AE + + L + ++    +  E             + G    
Sbjct: 401 ESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVP---------KYGMVQF 451

Query: 636 LVGINLLREGLDIPECGLVAILDAD 660
           ++G    + G ++P   +  I + +
Sbjct: 452 VIGT--FQNGFELPLAKVAIISETE 474



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 14/188 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+   A      V + I     +  
Sbjct: 775 VLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDG 834

Query: 584 RILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++           + A++++  + +  +     H ++   E   +I     G+FDVLV  
Sbjct: 835 QVYYLYNRVESITQKADEISAMVPDARVATA--HGQMGESELESVILSFLEGEFDVLVTT 892

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G L     L   +GR  R   +  +   D I +    
Sbjct: 893 TIIETGVDIPNVNTLFVQDADRMG-LSQLYQLRGRVGRWNRIAYAYFMYQKDKILR---- 947

Query: 700 AIDETTRR 707
             +E  +R
Sbjct: 948 --EEAEKR 953


>gi|47096207|ref|ZP_00233806.1| transcription-repair coupling factor [Listeria monocytogenes str.
           1/2a F6854]
 gi|224500335|ref|ZP_03668684.1| transcription-repair coupling factor [Listeria monocytogenes
           Finland 1988]
 gi|254901001|ref|ZP_05260925.1| transcription-repair coupling factor [Listeria monocytogenes J0161]
 gi|254913931|ref|ZP_05263943.1| transcription-repair coupling factor [Listeria monocytogenes J2818]
 gi|47015455|gb|EAL06389.1| transcription-repair coupling factor [Listeria monocytogenes str.
           1/2a F6854]
 gi|293591949|gb|EFG00284.1| transcription-repair coupling factor [Listeria monocytogenes J2818]
          Length = 1179

 Score =  219 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 199/505 (39%), Gaps = 45/505 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MDVDRLFLY-------------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    S  +     +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++ + L EL+++    + Q L + +  DLEML +       + + +Y+    P 
Sbjct: 240 VKRLEKKMMLTLNELKEQ---EDKQALIENLEEDLEMLRSGVKP---DMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +LF+Y+P+++ + +DE    +     + R +   +        R+ +  D +    
Sbjct: 294 --PASLFDYLPKNTAILLDEFGRILETEESLEREEAEWQTETLS---RMETVRDVQVS-- 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +  L    +  + +P  +     + +   ++ + T +V     ++    Q+  +  E+
Sbjct: 347 HSFKKL----LEGNHSPKIYLSLFQKQMASMRVSKTTNIVYKQ--MQQFHGQMNVLKTEL 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    +++       AE + + L + ++    +  E             + G    
Sbjct: 401 ESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVP---------KYGMVQF 451

Query: 636 LVGINLLREGLDIPECGLVAILDAD 660
           ++G    + G ++P   +  I + +
Sbjct: 452 VIGT--FQNGFELPLAKVAIISETE 474



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 14/188 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+   A      V + I     +  
Sbjct: 775 VLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDG 834

Query: 584 RILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++           + A++++  + +  +     H ++   E   +I     G+FDVLV  
Sbjct: 835 QVYYLYNRVESITQKADEISAMVPDARVATA--HGQMGESELESVILSFLEGEFDVLVTT 892

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G L     L   +GR  R   +  +   D I +    
Sbjct: 893 TIIETGVDIPNVNTLFVQDADRMG-LSQLYQLRGRVGRWNRIAYAYFMYQKDKILR---- 947

Query: 700 AIDETTRR 707
             +E  +R
Sbjct: 948 --EEAEKR 953


>gi|257899966|ref|ZP_05679619.1| transcription-repair coupling factor [Enterococcus faecium Com15]
 gi|257837878|gb|EEV62952.1| transcription-repair coupling factor [Enterococcus faecium Com15]
          Length = 1173

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 93/520 (17%), Positives = 195/520 (37%), Gaps = 47/520 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + + +  +  +   QL+ G+ GS KT   A+  +   +  I++ PN   A QL  + ++ 
Sbjct: 13  VKEWISNLEEKMPRQLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHV 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P + +  F             P  +    + +  + +    R +   +L E+   I + 
Sbjct: 73  IPQDQIHLF-------------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLL 119

Query: 277 SVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   + + +++ Q  +   +GD ++ + L   L    Y R+++    G F + G  
Sbjct: 120 PVAALHKRLPNKKTWLQAQLNWHVGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSI 179

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P    +   RV +F  +I+ +  F   T + I   E I +   S  V     L   
Sbjct: 180 VDIYPLTT-NYPIRVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHG 238

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ +++ L+ RL    +E      Q    ++T      +     +  + YS  L      
Sbjct: 239 IEQMQKMLEKRLAATTEEADREFLQDYFGQMT---SSWQAGIPTEEAKFYSDLLY----- 290

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           +   T+ +Y P +SLL VD+    +     + R              R+ S         
Sbjct: 291 QEFVTILDYFPSNSLLVVDDYQRIMETNREIEREAAEWHTQKIS-ELRVFSEQSFSADVQ 349

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                 + TT   S        ++  G +  Q I           ++    Q+  +  E+
Sbjct: 350 RIVQKEKFTTTFFSL------FQKGMGNLRFQAIHNFQYR----TMQQFFGQMPLLKTEM 399

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   +Q   +++ + TK       + L + +I V  + +E   L R             V
Sbjct: 400 DRWRKQKQTVVIFIPTKDRIRKAEQMLRDEDILV--VETEKNALIR-----------GQV 446

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            +    L+ G ++P+  +VAI + +       K +  QT+
Sbjct: 447 QLVEGALQAGFELPQEKIVAITEKEIFQKTTKKQTRRQTV 486



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPIQTYVMEKNPGAIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I+    +G ++          E   E + E     R  Y H ++   +    + +   
Sbjct: 821 EAIHREMGRGGQVFYLYNRVETIEQKVEEIQELVPEARIGYAHGQMTEAQLENTLFEFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++DVLV   ++  G+DIP    + + +AD  G L +   L   +GR++R      + YA
Sbjct: 881 GQYDVLVTTTIIETGVDIPNANTLFVENADYMG-LSTLYQLRGRVGRSSR------VAYA 933

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
             + +  Q  ++E + +R + ++
Sbjct: 934 YFMYEQ-QKILNEVSEKRLQAIK 955


>gi|16802260|ref|NP_463745.1| transcription-repair coupling factor [Listeria monocytogenes EGD-e]
 gi|224503466|ref|ZP_03671773.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           R2-561]
 gi|284803047|ref|YP_003414912.1| transcription-repair coupling factor [Listeria monocytogenes
           08-5578]
 gi|284996188|ref|YP_003417956.1| transcription-repair coupling factor [Listeria monocytogenes
           08-5923]
 gi|16409579|emb|CAD00741.1| transcription-repair coupling factor [Listeria monocytogenes EGD-e]
 gi|284058609|gb|ADB69550.1| transcription-repair coupling factor [Listeria monocytogenes
           08-5578]
 gi|284061655|gb|ADB72594.1| transcription-repair coupling factor [Listeria monocytogenes
           08-5923]
          Length = 1179

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 199/505 (39%), Gaps = 45/505 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MDVDRLFLY-------------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    S  +     +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++ + L EL+++    + Q L + +  DLEML +       + + +Y+    P 
Sbjct: 240 VKRLEKKMMLTLNELKEQ---EDKQALIENLEEDLEMLRSGVKP---DMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +LF+Y+P+++ + +DE    +     + R +   +        R+ +  D +    
Sbjct: 294 --PASLFDYLPKNTAILLDEFGRILETEESLEREEAEWQTETLS---RMETVRDVQVS-- 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +  L    +  + +P  +     + +   ++ + T +V     ++    Q+  +  E+
Sbjct: 347 HSFKKL----LEGNHSPKIYLSLFQKQMASMRVSKTTNIVYKQ--MQQFHGQMNVLKTEL 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    +++       AE + + L + ++    +  E             + G    
Sbjct: 401 ESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVP---------KYGMVQF 451

Query: 636 LVGINLLREGLDIPECGLVAILDAD 660
           ++G    + G ++P   +  I + +
Sbjct: 452 VIGT--FQNGFELPLAKVAIISETE 474



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 14/188 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+   A      V + I     +  
Sbjct: 775 VLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDG 834

Query: 584 RILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++           + A++++  + +  +     H ++   E   +I     G+FDVLV  
Sbjct: 835 QVYYLYNRVESITQKADEISAMVPDARVATA--HGQMGESELESVILSFLEGEFDVLVTT 892

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G L     L   +GR  R   +  +   D I +    
Sbjct: 893 TIIETGVDIPNVNTLFVQDADRMG-LSQLYQLRGRVGRWNRIAYAYFMYQKDKILR---- 947

Query: 700 AIDETTRR 707
             +E  +R
Sbjct: 948 --EEAEKR 953


>gi|293571071|ref|ZP_06682112.1| transcription-repair coupling factor [Enterococcus faecium E980]
 gi|291608854|gb|EFF38135.1| transcription-repair coupling factor [Enterococcus faecium E980]
          Length = 1173

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 93/520 (17%), Positives = 195/520 (37%), Gaps = 47/520 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + + +  +  +   QL+ G+ GS KT   A+  +   +  I++ PN   A QL  + ++ 
Sbjct: 13  VKEWISNLEEKMPRQLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHV 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P + +  F             P  +    + +  + +    R +   +L E+   I + 
Sbjct: 73  IPQDQIHLF-------------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLL 119

Query: 277 SVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   + + +++ Q  +   +GD ++ + L   L    Y R+++    G F + G  
Sbjct: 120 PVAALHKRLPNKKTWLQAQLNWHVGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSI 179

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P    +   RV +F  +I+ +  F   T + I   E I +   S  V     L   
Sbjct: 180 VDIYPLTT-NYPIRVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHG 238

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ +++ L+ RL    +E      Q    ++T      +     +  + YS  L      
Sbjct: 239 IEQMQKMLEKRLAATTEEADREFLQDYFGQMT---SSWQAGIPTEEAKFYSDLLY----- 290

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           +   T+ +Y P +SLL VD+    +     + R              R+ S         
Sbjct: 291 QEFVTILDYFPSNSLLVVDDYQRIMETNREIEREAAEWHTQKIS-ELRVFSEQSFSADVQ 349

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                 + TT   S        ++  G +  Q I           ++    Q+  +  E+
Sbjct: 350 RIVQKEKFTTTFFSL------FQKGMGNLRFQAIHNFHYR----TMQQFFGQMPLLKTEM 399

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   +Q   +++ + TK       + L + +I V  + +E   L R             V
Sbjct: 400 DRWRKQKQTVVIFIPTKDRIRKAEQMLRDEDILV--VETEKNALIR-----------GQV 446

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            +    L+ G ++P+  +VAI + +       K +  QT+
Sbjct: 447 QLVEGALQAGFELPQEKIVAITEKEIFQKTTKKQTRRQTV 486



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPIQTYVMEKNPGAIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I+    +G ++          E   E + E     R  Y H ++   +    + +   
Sbjct: 821 EAIHREMGRGGQVFYLYNRVETIEQKVEEIQELVPEARIGYAHGQMTEAQLENTLFEFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++DVLV   ++  G+DIP    + + +AD  G L +   L   +GR++R      + YA
Sbjct: 881 GQYDVLVTTTIIETGVDIPNANTLFVENADYMG-LSTLYQLRGRVGRSSR------VAYA 933

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
             + +  Q  ++E + +R + ++
Sbjct: 934 YFMYEQ-QKILNEVSEKRLQAIK 955


>gi|294618628|ref|ZP_06698167.1| transcription-repair coupling factor [Enterococcus faecium E1679]
 gi|291595147|gb|EFF26485.1| transcription-repair coupling factor [Enterococcus faecium E1679]
          Length = 1173

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 94/520 (18%), Positives = 193/520 (37%), Gaps = 47/520 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + + +  +  +   QL+ G+ GS KT   A+  +   +  I++ PN   A QL  + ++ 
Sbjct: 13  VKEWVSNLEEKMPRQLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHV 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P + +  F             P  +    + +  + +    R +   +L E+   I + 
Sbjct: 73  IPQDQIHLF-------------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLL 119

Query: 277 SVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   + + +++ Q  +   IGD ++ + L   L    Y R+++    G F + G  
Sbjct: 120 PVASLHKRLPNKKTWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSI 179

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P        RV +F  +I+ +  F   T + I   E I +   S  V     L   
Sbjct: 180 IDIYPLTT-TYPVRVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHG 238

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ +++ L+ RL    +E      Q             +     +  + YS  L      
Sbjct: 239 IEQMQKMLEKRLAATTEEADREFLQDY---FGQLTSSWQAGVPTEEAKFYSDLLY----- 290

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           +   T+ +Y P +SLL VD+    +     + R     +        R+ S         
Sbjct: 291 QESVTILDYFPSNSLLVVDDYQRIMETNREIEREAAEWQTQKIS-ELRVFSEQTFSADIQ 349

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           +     + TT   S        ++  G +  Q I           ++    Q+  +  E+
Sbjct: 350 KIVQKEKFTTTFFSL------FQKGMGNLRFQAIHNFQYR----TMQQFFGQMPLLKTEM 399

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   +Q   +++ + TK       + L + +I V  + +E   L R             V
Sbjct: 400 DRWRKQKQTVVIFIPTKDRIRKAEQMLRDEDILV--VETEKNALIR-----------GQV 446

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            +    L+ G ++P+  +VAI + +       K +  QT+
Sbjct: 447 QLVEGALQAGFELPQEKIVAITEKEIFQKTTKKQTRRQTV 486



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPIQTYVMEKNPGAIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I+    +G ++          E   E + E     R  Y H ++   +    + +   
Sbjct: 821 EAIHREMGRGGQVFYLYNRVETIEQKVEEIQELVPEARIGYAHGQMTEAQLENTLFEFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++DVLV   ++  G+DIP    + + +AD  G L +   L   +GR++R      + YA
Sbjct: 881 GQYDVLVTTTIIETGVDIPNANTLFVENADYMG-LSTLYQLRGRVGRSSR------VAYA 933

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
             + +  Q  ++E + +R + ++
Sbjct: 934 YFMYEQ-QKILNEVSEKRLQAIK 955


>gi|169830290|ref|YP_001716272.1| transcription-repair coupling factor [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637134|gb|ACA58640.1| transcription-repair coupling factor [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 1176

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 98/511 (19%), Positives = 179/511 (35%), Gaps = 45/511 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+   + G+ +R K Q +LGV G  +    A +      P +++ P +  AA L  +  
Sbjct: 12  PALKTAVSGL-ARYKRQHVLGVGGGHQALVCAAL-ARDPAPLLIITPGEREAAALADDLV 69

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
              P   +  F ++             +    +  + + +I   R     +L+   + +V
Sbjct: 70  TLLPGRGIFVFSAW-------------ELLPVQVLAYSREIGVRRMRVLEALITGTNPVV 116

Query: 275 VSSVSCIYGIGSVE-SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           ++ V  +  +        + I  L+ G S     L   L+   Y+        G F + G
Sbjct: 117 IAPVDALARLLPPSGVLRERIFVLEGGQSWTMGALRGRLLSMGYEAVSQVDTAGQFSIRG 176

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
              ++FP +      RV  FG++I  +  F P T +     + + +   +  V       
Sbjct: 177 GIADLFP-YTARYPIRVEFFGDEIASLRTFDPETQRSRAATDRVTVAPATELVVEDDAWE 235

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             ++ +  E + +L  LEK+G    A+RL + +   L  L+       IE+   Y   + 
Sbjct: 236 AGIETLTREYREQLDRLEKQGDTEGARRLREWVEEILPHLDARSHTPGIEDLLAYFYPQA 295

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
                 TL +Y+    ++ V E            +   H  A L E G  LP        
Sbjct: 296 -----ATLMDYLGPAGVVAVTEPDRVAEVAESFAQHRAHGYAVLLEQGRLLPGQFRLYLD 350

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDVY 572
           R + +  L P   V                 V    R    +   V E+     +   V 
Sbjct: 351 REQLFAALAPFRTVY----------LSLFGRVGAFSRSDREIRFEVRELPGNLGRTGAVL 400

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EI      G R++L V T   A  L   L +  +             +   +  ++ G+
Sbjct: 401 GEIRRRQVAGQRVVLLVGTGERARRLLNSLRQSGLAAF----------QAYELGQVQPGQ 450

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEG 663
             V VG+  L +G +I E  L  + + +  G
Sbjct: 451 --VAVGVGRLNKGFEIAESQLAVLTEREIYG 479



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 70/189 (37%), Gaps = 9/189 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            I ++ATP    L     GI    ++    L   PV+          + + +     +G 
Sbjct: 775 VITLTATPIPRTLYMSLVGIRDTSLLETPPLDRFPVQTFVVEEDPVLIREAVGRELARGG 834

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +  +L E     R    H +++  +  +++ D   G +DVLV   +
Sbjct: 835 QVYFVHNRVFELDRVAGWLQELVPEARIAVAHGQMREDQLEQVMLDFVAGAYDVLVCTTI 894

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDI     + + +AD+ G  +    L Q  GR  R+       +     + +  A 
Sbjct: 895 IETGLDITNVNTLVVKEADQLGLAQ----LYQLRGRVGRSNRLAYAYFTFRRDRLLGEAA 950

Query: 702 DETTRRREK 710
           +   R R  
Sbjct: 951 E--KRLRAI 957



 Score = 42.4 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 14/138 (10%)

Query: 90  QTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHP 149
           ++++   + +    Q L +L  +   L   G  +     W           F++   +  
Sbjct: 576 RSKKRVREAVREMAQELLKLYAARQSLP--GYRFPADNPWQRE--------FELAFPFEE 625

Query: 150 SGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAMQ--RPAIVMAPNKIL 205
           + DQ  AI Q+ K +   R   +LL G  G GKT   M  V +A+   + A V+ P  +L
Sbjct: 626 TPDQLKAIMQVKKDMERPRPMDRLLCGDVGYGKTEVAMRAVFKAVTDGKQAAVLVPTTVL 685

Query: 206 AAQLYSEFKNFFPHNAVE 223
           A Q    F+  F    V 
Sbjct: 686 AQQHLQTFRERFNGYPVV 703


>gi|314949307|ref|ZP_07852650.1| transcription-repair coupling factor [Enterococcus faecium TX0082]
 gi|313644313|gb|EFS08893.1| transcription-repair coupling factor [Enterococcus faecium TX0082]
          Length = 1173

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 94/520 (18%), Positives = 193/520 (37%), Gaps = 47/520 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + + +  +  +   QL+ G+ GS KT   A+  +   +  I++ PN   A QL  + ++ 
Sbjct: 13  VKEWVSNLEEKMPRQLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHV 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P + +  F             P  +    + +  + +    R +   +L E+   I + 
Sbjct: 73  IPQDQIHLF-------------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLL 119

Query: 277 SVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   + + +++ Q  +   IGD ++ + L   L    Y R+++    G F + G  
Sbjct: 120 PVASLHKRLPNKKTWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSI 179

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P        RV +F  +I+ +  F   T + I   E I +   S  V     L   
Sbjct: 180 IDIYPLTT-TYPVRVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHG 238

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ +++ L+ RL    +E      Q             +     +  + YS  L      
Sbjct: 239 IEQMQKMLEKRLAATTEEADREFLQDY---FGQLTSSWQAGVPTEEAKFYSDLLY----- 290

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           +   T+ +Y P +SLL VD+    +     + R     +        R+ S         
Sbjct: 291 QESVTILDYFPSNSLLVVDDYQRIMETNREIEREAAEWQTQKIS-ELRVFSEQTFSADIQ 349

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           +     + TT   S        ++  G +  Q I           ++    Q+  +  E+
Sbjct: 350 KIVQKEKFTTTFFSL------FQKGMGNLRFQAIHNFQYR----TMQQFFGQMPLLKTEM 399

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   +Q   +++ + TK       + L + +I V  + +E   L R             V
Sbjct: 400 DRWRKQKQTVVIFIPTKDRIRKAEQMLRDEDILV--VETEKNALIR-----------GQV 446

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            +    L+ G ++P+  +VAI + +       K +  QT+
Sbjct: 447 QLVEGALQAGFELPQEKIVAITEKEIFQKTTKKQTRRQTV 486



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPIQTYVMEKNPGSIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I+    +G ++          E   E + E     R  Y H ++   +    + +   
Sbjct: 821 EAIHREMGRGGQVFYLYNRVETIEQKVEEIQELVPEARIGYAHGQMTEAQLENTLFEFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++DVLV   ++  G+DIP    + + +AD  G L +   L   +GR++R      + YA
Sbjct: 881 GQYDVLVTTTIIETGVDIPNANTLFVENADYMG-LSTLYQLRGRVGRSSR------VAYA 933

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
             + +  Q  ++E + +R + ++
Sbjct: 934 YFMYEQ-QKILNEVSEKRLQAIK 955


>gi|69245443|ref|ZP_00603438.1| Transcription-repair coupling factor [Enterococcus faecium DO]
 gi|257879854|ref|ZP_05659507.1| transcription-repair coupling factor [Enterococcus faecium
           1,230,933]
 gi|257882580|ref|ZP_05662233.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,502]
 gi|257891695|ref|ZP_05671348.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,410]
 gi|257894170|ref|ZP_05673823.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,408]
 gi|258614282|ref|ZP_05712052.1| transcription-repair coupling factor [Enterococcus faecium DO]
 gi|260559527|ref|ZP_05831708.1| transcription-repair coupling factor [Enterococcus faecium C68]
 gi|261206678|ref|ZP_05921376.1| transcription-repair coupling factor [Enterococcus faecium TC 6]
 gi|289565039|ref|ZP_06445493.1| transcription-repair coupling factor [Enterococcus faecium D344SRF]
 gi|293563193|ref|ZP_06677649.1| transcription-repair coupling factor [Enterococcus faecium E1162]
 gi|293570115|ref|ZP_06681195.1| transcription-repair coupling factor [Enterococcus faecium E1071]
 gi|294614900|ref|ZP_06694791.1| transcription-repair coupling factor [Enterococcus faecium E1636]
 gi|294623704|ref|ZP_06702537.1| transcription-repair coupling factor [Enterococcus faecium U0317]
 gi|314938215|ref|ZP_07845515.1| transcription-repair coupling factor [Enterococcus faecium
           TX0133a04]
 gi|314943110|ref|ZP_07849909.1| transcription-repair coupling factor [Enterococcus faecium TX0133C]
 gi|314952240|ref|ZP_07855255.1| transcription-repair coupling factor [Enterococcus faecium TX0133A]
 gi|314992098|ref|ZP_07857548.1| transcription-repair coupling factor [Enterococcus faecium TX0133B]
 gi|314996281|ref|ZP_07861337.1| transcription-repair coupling factor [Enterococcus faecium
           TX0133a01]
 gi|68195825|gb|EAN10261.1| Transcription-repair coupling factor [Enterococcus faecium DO]
 gi|257814082|gb|EEV42840.1| transcription-repair coupling factor [Enterococcus faecium
           1,230,933]
 gi|257818238|gb|EEV45566.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,502]
 gi|257828055|gb|EEV54681.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,410]
 gi|257830549|gb|EEV57156.1| transcription-repair coupling factor [Enterococcus faecium
           1,231,408]
 gi|260074626|gb|EEW62947.1| transcription-repair coupling factor [Enterococcus faecium C68]
 gi|260079171|gb|EEW66864.1| transcription-repair coupling factor [Enterococcus faecium TC 6]
 gi|289163246|gb|EFD11092.1| transcription-repair coupling factor [Enterococcus faecium D344SRF]
 gi|291587487|gb|EFF19371.1| transcription-repair coupling factor [Enterococcus faecium E1071]
 gi|291592186|gb|EFF23804.1| transcription-repair coupling factor [Enterococcus faecium E1636]
 gi|291596919|gb|EFF28137.1| transcription-repair coupling factor [Enterococcus faecium U0317]
 gi|291604843|gb|EFF34321.1| transcription-repair coupling factor [Enterococcus faecium E1162]
 gi|313589525|gb|EFR68370.1| transcription-repair coupling factor [Enterococcus faecium
           TX0133a01]
 gi|313593312|gb|EFR72157.1| transcription-repair coupling factor [Enterococcus faecium TX0133B]
 gi|313595635|gb|EFR74480.1| transcription-repair coupling factor [Enterococcus faecium TX0133A]
 gi|313598169|gb|EFR77014.1| transcription-repair coupling factor [Enterococcus faecium TX0133C]
 gi|313642411|gb|EFS06991.1| transcription-repair coupling factor [Enterococcus faecium
           TX0133a04]
          Length = 1173

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 94/520 (18%), Positives = 193/520 (37%), Gaps = 47/520 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + + +  +  +   QL+ G+ GS KT   A+  +   +  I++ PN   A QL  + ++ 
Sbjct: 13  VKEWVSNLEEKMPRQLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHV 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P + +  F             P  +    + +  + +    R +   +L E+   I + 
Sbjct: 73  IPQDQIHLF-------------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLL 119

Query: 277 SVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   + + +++ Q  +   IGD ++ + L   L    Y R+++    G F + G  
Sbjct: 120 PVASLHKRLPNKKTWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSI 179

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P        RV +F  +I+ +  F   T + I   E I +   S  V     L   
Sbjct: 180 IDIYPLTT-TYPVRVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHG 238

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ +++ L+ RL    +E      Q             +     +  + YS  L      
Sbjct: 239 IEQMQKMLEKRLAATTEEADREFLQDY---FGQLTSSWQAGVPTEEAKFYSDLLY----- 290

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           +   T+ +Y P +SLL VD+    +     + R     +        R+ S         
Sbjct: 291 QESVTILDYFPSNSLLVVDDYQRIMETNREIEREAAEWQTQKIS-ELRVFSEQTFSADIQ 349

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           +     + TT   S        ++  G +  Q I           ++    Q+  +  E+
Sbjct: 350 KIVQKEKFTTTFFSL------FQKGMGNLRFQAIHNFQYR----TMQQFFGQMPLLKTEM 399

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   +Q   +++ + TK       + L + +I V  + +E   L R             V
Sbjct: 400 DRWRKQKQTVVIFIPTKDRIRKAEQMLRDEDILV--VETEKNALIR-----------GQV 446

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            +    L+ G ++P+  +VAI + +       K +  QT+
Sbjct: 447 QLVEGALQAGFELPQEKIVAITEKEIFQKTTKKQTRRQTV 486



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPIQTYVMEKNPGAIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I+    +G ++          E   E + E     R  Y H ++   +    + +   
Sbjct: 821 EAIHREMGRGGQVFYLYNRVETIEQKVEEIQELVPEARIGYAHGQMTEAQLENTLFEFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++DVLV   ++  G+DIP    + + +AD  G L +   L   +GR++R      + YA
Sbjct: 881 GQYDVLVTTTIIETGVDIPNANTLFVENADYMG-LSTLYQLRGRVGRSSR------VAYA 933

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
             + +  Q  ++E + +R + ++
Sbjct: 934 YFMYEQ-QKILNEVSEKRLQAIK 955


>gi|293553692|ref|ZP_06674316.1| transcription-repair coupling factor [Enterococcus faecium E1039]
 gi|291602267|gb|EFF32495.1| transcription-repair coupling factor [Enterococcus faecium E1039]
          Length = 1173

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 94/520 (18%), Positives = 193/520 (37%), Gaps = 47/520 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + + +  +  +   QL+ G+ GS KT   A+  +   +  I++ PN   A QL  + ++ 
Sbjct: 13  VKEWVSNLEEKMPRQLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHV 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P + +  F             P  +    + +  + +    R +   +L E+   I + 
Sbjct: 73  IPQDQIHLF-------------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLL 119

Query: 277 SVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   + + +++ Q  +   IGD ++ + L   L    Y R+++    G F + G  
Sbjct: 120 PVASLHKRLPNKKTWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSI 179

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P        RV +F  +I+ +  F   T + I   E I +   S  V     L   
Sbjct: 180 IDIYPLTT-TYPVRVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHG 238

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ +++ L+ RL    +E      Q             +     +  + YS  L      
Sbjct: 239 IEQMQKMLEKRLAATTEEADREFLQDY---FGQLTSSWQAGVPTEEAKFYSDLLY----- 290

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           +   T+ +Y P +SLL VD+    +     + R     +        R+ S         
Sbjct: 291 QESVTILDYFPSNSLLVVDDYQRIMETNREIEREAAEWQTQKIS-ELRVFSEQTFSADIQ 349

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           +     + TT   S        ++  G +  Q I           ++    Q+  +  E+
Sbjct: 350 KIVQKEKFTTTFFSL------FQKGMGNLRFQAIHNFQYR----TMQQFFGQMPLLKTEM 399

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   +Q   +++ + TK       + L + +I V  + +E   L R             V
Sbjct: 400 DRWRKQKQTVVIFIPTKDRIRKAEQMLRDEDILV--VETEKNALIR-----------GQV 446

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            +    L+ G ++P+  +VAI + +       K +  QT+
Sbjct: 447 QLVEGALQAGFELPQEKIVAITEKEIFQKTTKKQTRRQTV 486



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPIQTYVMEKNPGAIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I+    +G ++          E   E + E     R  Y H ++   +    + +   
Sbjct: 821 EAIHREMGRGGQVFYLYNRVETIEQKVEEIQELVPEARIGYAHGQMTEAQLENTLFEFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++DVLV   ++  G+DIP    + + +AD  G L +   L   +GR++R      + YA
Sbjct: 881 GQYDVLVTTTIIETGVDIPNANTLFVENADYMG-LSTLYQLRGRVGRSSR------VAYA 933

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
             + +  Q  ++E + +R + ++
Sbjct: 934 YFMYEQ-QKILNEVSEKRLQAIK 955


>gi|255019193|ref|ZP_05291319.1| excinuclease ABC subunit B [Listeria monocytogenes FSL F2-515]
          Length = 177

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 83/177 (46%), Positives = 111/177 (62%)

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           L ER D I+++SVSCIYG+GS   Y +M+V L++G  + + +LL  LV  QY R DI   
Sbjct: 1   LFERRDVIIIASVSCIYGLGSPIEYGEMLVSLRVGMEISRDQLLRKLVDIQYDRNDIDFQ 60

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           RG FRV GD +EIFP+  ++   R+  FG++IE I E   LTG+ I   E + I+  SH+
Sbjct: 61  RGRFRVRGDVVEIFPASRDEHCMRIEFFGDEIERIREVDALTGEIIGEREHVSIFPASHF 120

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           VT    +  A+  IK EL+ RL  L  + +LLEAQRLEQR  YDLEM+E  G C  I
Sbjct: 121 VTRPDIMKKAIVNIKAELEDRLKVLRADNKLLEAQRLEQRTNYDLEMMEEMGYCSGI 177


>gi|227552670|ref|ZP_03982719.1| transcription-repair coupling factor [Enterococcus faecium TX1330]
 gi|257897406|ref|ZP_05677059.1| transcription-repair coupling factor [Enterococcus faecium Com12]
 gi|293378835|ref|ZP_06624990.1| transcription-repair coupling factor [Enterococcus faecium PC4.1]
 gi|227178199|gb|EEI59171.1| transcription-repair coupling factor [Enterococcus faecium TX1330]
 gi|257833971|gb|EEV60392.1| transcription-repair coupling factor [Enterococcus faecium Com12]
 gi|292642376|gb|EFF60531.1| transcription-repair coupling factor [Enterococcus faecium PC4.1]
          Length = 1173

 Score =  218 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 93/520 (17%), Positives = 195/520 (37%), Gaps = 47/520 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + + +  +  +   QL+ G+ GS KT   A+  +   +  I++ PN   A QL  + ++ 
Sbjct: 13  VKEWISNLEEKMPRQLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHV 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P + +  F             P  +    + +  + +    R +   +L E+   I + 
Sbjct: 73  IPQDQIHLF-------------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLL 119

Query: 277 SVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   + + +++ Q  +   +GD ++ + L   L    Y R+++    G F + G  
Sbjct: 120 PVAALHKRLPNKKTWLQAQLNWHVGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSI 179

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P    +   RV +F  +I+ +  F   T + I   E I +   S  V     L   
Sbjct: 180 VDIYPLTT-NYPIRVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHG 238

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ +++ L+ RL    +E      Q    ++T      +     +  + YS  L      
Sbjct: 239 IEQMQKMLEKRLAATTEEADREFLQDYFGQMT---SSWQVGIPTEEAKFYSDLLY----- 290

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           +   T+ +Y P +SLL VD+    +     + R              R+ S         
Sbjct: 291 QEFVTILDYFPSNSLLVVDDYQRIMETNREIEREAAEWHTQKIS-ELRVFSEQSFSADVQ 349

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                 + TT   S        ++  G +  Q I           ++    Q+  +  E+
Sbjct: 350 RIVQKEKFTTTFFSL------FQKGMGNLRFQAIHNFQYR----TMQQFFGQMPLLKTEM 399

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   +Q   +++ + TK       + L + +I V  + +E   L R             V
Sbjct: 400 DRWRKQKQTVVIFIPTKDRIRKAEQMLRDEDILV--VETEKNALIR-----------GQV 446

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            +    L+ G ++P+  +VAI + +       K +  QT+
Sbjct: 447 QLVEGALQAGFELPQEKIVAITEKEIFQKTTKKQTRRQTV 486



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          + 
Sbjct: 761 ERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPIQTYVMEKNPGAIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I+    +G ++          E   E + E     R  Y H ++   +    + +   
Sbjct: 821 EAIHREMGRGGQVFYLYNRVETIEQKVEEIQELVPEARIGYAHGQMTEAQLENTLFEFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++DVLV   ++  G+DIP    + + +AD  G L +   L   +GR++R      + YA
Sbjct: 881 GQYDVLVTTTIIETGVDIPNANTLFVENADYMG-LSTLYQLRGRVGRSSR------VAYA 933

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
             + +  Q  ++E + +R + ++
Sbjct: 934 YFMYEQ-QKILNEVSEKRLQAIK 955


>gi|218777910|ref|YP_002429228.1| transcription-repair coupling factor [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759294|gb|ACL01760.1| transcription-repair coupling factor [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1179

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 109/529 (20%), Positives = 195/529 (36%), Gaps = 41/529 (7%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207
            P+ +   A AQ L      +     LG+  S + + +A++    +R  +V+AP K  A 
Sbjct: 3   SPNPNAVKAAAQYLALTRESQGPVECLGLERSSQAYFIAQLFREKKRTVLVLAPTKKEAK 62

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
            L ++   F               +  E   P       K  S + +    R SA   + 
Sbjct: 63  TLCADLDFFLQDLKQPESALPGQGWILE--FPAYHILPFKGISYHTETAANRISALSRMA 120

Query: 268 -ERNDCIVVSSVSCIYGIGSVESYSQMIVQL-KIGDSVEQKELLSSLVKQQYKRQDIGII 325
              +  IVV++   +      +S      +L   G+ +++   +  LV   Y +  I   
Sbjct: 121 NSPDPAIVVTTPQAMASRLIPKSALNSFGELIMAGEELDRDAFVEKLVSGGYVKNLIVEE 180

Query: 326 RGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            G F V G  ++++ P + +    R+  FG++++ I  F P T + I+ +E   I   + 
Sbjct: 181 PGDFCVRGSIVDVYGPPYSQ--PLRIEFFGDEVDSIRFFSPSTQRTIKKMEEAVILPATE 238

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
            V  +  L + +  ++E  K  L ++              +I   ++ L+ T     IE 
Sbjct: 239 AVVSKDRLQSVIHRVRE--KAVLADMPVT-----------KIREVVDSLKATQQFPGIEG 285

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
           +   L   N G+   +LF+Y+P D+L  V +  V   Q    Y  D       A+   RL
Sbjct: 286 FVPLLY-ENGGD---SLFDYLPADTLCTVLDP-VAASQEYEKYLEDVEENFETAQAENRL 340

Query: 505 --PSCMDNRPLR--FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
             P  M + P     +  N  RP T    A  G  E E  +  +   +   T LV     
Sbjct: 341 SIPPAMTHLPAEDFRKRLNRARPLTFPTLAVTGPQEEEAGKARMQLHVETNTELVQNLKA 400

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
            +     ++ + D +N    QG  I++   +K  AE L   L    +           L 
Sbjct: 401 SKERDQLLKPLADWVNDKRDQGYSIVMACGSKMQAERLESLLTPYGVG----------LS 450

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           R +        +  V++G   L  G   P   L  + + +  G    + 
Sbjct: 451 RNQNWMTRPSARCQVVLGS--LSSGFVWPAESLAVVTETEIFGPKHRRR 497



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 68/200 (34%), Gaps = 24/200 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L           IR   +++ P E R    T V    + I   A +  
Sbjct: 788 VLALTATPIPRTLHMSMVG-----IRDITVINTPPEQRRPITTYVSKFDEVIAAEAIRAE 842

Query: 584 RI----LLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  V  +      MA  L   + E  + V   H ++      +++      + D
Sbjct: 843 LARKGQVFFVHNRVQSIDAMAGRLKRLVPEARVGVA--HGQMSETMLEKVMIKFVNHEID 900

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV   ++  GLDIP    + I  AD  G  +      Q  GR  R  +           
Sbjct: 901 LLVCTAIIESGLDIPAANTILINRADMFGLAQIY----QLRGRVGRGDDQAYAYLFIPDE 956

Query: 695 KSIQLAIDETTRRREKQLEH 714
             +     +  RR +  +EH
Sbjct: 957 SVLTR---DAQRRLKVLMEH 973


>gi|188584709|ref|YP_001916254.1| transcription-repair coupling factor [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349396|gb|ACB83666.1| transcription-repair coupling factor [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 1196

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 108/562 (19%), Positives = 202/562 (35%), Gaps = 66/562 (11%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
             R   Q++ G++GS     +A +  A  RP  ++  +   A  LYS+         V  
Sbjct: 25  RKRSTKQMVSGISGSEFPLILAGLFRAYGRPITLITYDNYRAESLYSDLVTLLDKEQVYI 84

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYG 283
           +             P    Y  + +  +  ++  R    +++L +   + + S+ S    
Sbjct: 85  Y-------------PEHQVYPFELAWQSRDVNNERAQVLQAMLSKKSAVYIFSLKSAKEK 131

Query: 284 IGSVESYSQMIVQLKI-GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           +   +   Q  + L++  + +    +   L    Y+   +   +G F   G  I++FP  
Sbjct: 132 LSPAQVVKQTFLNLEVGNEKLSPTMIAEKLTGLGYENTSMVEQKGQFSHRGGIIDVFPV- 190

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL-NTAMKYIKE 401
             ++  R+  F ++IE I  F   T + ++   ++ +   S  V    T  + A+  +  
Sbjct: 191 ASELPVRIEFFDDEIESIRAFDLATQRSLKEYNSLVVGPGSQLVIGDNTNLSQALNQLTR 250

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           E +++  +L K+G    ++ LE+RI  DL  LE   S      Y  Y   +N G    T+
Sbjct: 251 EFELQKGKLMKDGITDRSEELEERINRDLSSLENGISLPHFHRYLSYFYPKNYG----TI 306

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +++P +SL +VDE +                  +L E G  LP    N     E+    
Sbjct: 307 IDFLPTNSLFWVDEPNRIKESDEFYNNEITELAESLIEEGKILPG-ESNLFYSIEDVLSG 365

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            P   + SA          +    E + + T +      +     Q +    E+      
Sbjct: 366 NPFDTIYSA-------NFLRQNPFENVSQATNM--SVKSMNQFYGQWDFFLKEMKQWMNN 416

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             RI+L   T   A  L E L +  I          T+      +     +  V++ +  
Sbjct: 417 NYRIILFSPTPESARTLYENLKKEEIGA--------TIVEKGNTKT----ENQVVIAVGD 464

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           L+ G  + E  L  I   D  G  + K    +                     KS   A+
Sbjct: 465 LKSGFILQESKLAVITYGDLWGHQKKKIRSRKR-------------------DKSEDKAV 505

Query: 702 DETTRRREKQLE-H--NKKHNI 720
             +   RE Q+E +  ++KH I
Sbjct: 506 KVSDY-RELQVEDYVVHEKHGI 526



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 30/173 (17%)

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           + +E    +I E + R            S   QV  V++ +    +             +
Sbjct: 825 YVMEHSPQLIREAVNREI----------SREGQVYVVHNRVKGINK-------------V 861

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A+++ +++ +  + V   H ++   +   ++ D   GK+DVLV  +++  GLDI     +
Sbjct: 862 AKEVADWVPDAKVGVA--HGQMPEKQLERVMLDFYEGKYDVLVSTSIVEAGLDIQNVNTI 919

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS----IQLAIDE 703
            I +AD+ G L     L   +GR+ R   + +    D +          AI E
Sbjct: 920 IIYNADRMG-LSQPYQLRGRVGRSNRMAYAYLTYQKDKVLTQEAEKRLKAIKE 971



 Score = 42.4 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 81/216 (37%), Gaps = 20/216 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           ++ ++  + ++    + L +L    +   + G  ++    W           F+    Y 
Sbjct: 587 QKVKQRVKSSVKELAEDLLKLYAERSS--RKGYAFSQDTPWQKE--------FEDYFPYE 636

Query: 149 PSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKI 204
            + DQ  AI+++ + + S +   +LL G  G GKT   M    +A+   +   V+ P  I
Sbjct: 637 LTPDQKKAISEIKEDLESEQPMDRLLCGDVGYGKTEVAMRAAFKAVMEGKQVCVLVPTTI 696

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
           LA Q +  FK  F    V+  V      Q +          E+    N +I    H    
Sbjct: 697 LAQQHFQTFKERFAPYPVDIRVISRFSSQKDE-----KLVKEEMKEGNAEIIIGTHKLLN 751

Query: 265 -SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
            S+  R+  +++      +G+   E    +   L +
Sbjct: 752 KSVKFRDLGLLIIDEEQRFGVQHKEKIKMLKKNLDV 787


>gi|145641147|ref|ZP_01796728.1| excinuclease ABC subunit B [Haemophilus influenzae R3021]
 gi|145274308|gb|EDK14173.1| excinuclease ABC subunit B [Haemophilus influenzae 22.4-21]
          Length = 150

 Score =  218 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 91/150 (60%), Positives = 112/150 (74%)

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           +   G C  IENYSRYL+GRN GEPPPTLF+Y+P D++L +DESHVT+PQI GMYRGD  
Sbjct: 1   MNELGYCSGIENYSRYLSGRNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRS 60

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           RK TL EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I++Q++RPT
Sbjct: 61  RKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEIIDQVVRPT 120

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
           GL+DP +EIR    QV+D+  E    A + 
Sbjct: 121 GLLDPLIEIRPVSIQVDDLLSEARQRADKK 150


>gi|228476216|ref|ZP_04060919.1| transcription-repair coupling factor [Staphylococcus hominis SK119]
 gi|228269701|gb|EEK11200.1| transcription-repair coupling factor [Staphylococcus hominis SK119]
          Length = 1169

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 88/505 (17%), Positives = 190/505 (37%), Gaps = 74/505 (14%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
             +  L+ G++ S K   +A+      +  +++  N   A +L ++   +  H+ V  + 
Sbjct: 23  GNQNILVTGLSPSAKATIIAEKYLNDDKQMLLITNNLYQADKLETDILQYIDHSEVYKY- 81

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L      + +  ++ +   + 
Sbjct: 82  ------------PVQDIMTEEFSTQSPQLMSERVRTLTALSHDKKGLFIVPLNGLKKWLT 129

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++GD ++  E L+ LV   Y+R+ +    G F + G  I+I+P   + 
Sbjct: 130 PVELWKHHQMTLEVGDDIDVDEFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIGQ- 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +++ I +F   T +   N+E + I   S Y+     +N     +++  + 
Sbjct: 189 -PVRIELFDTEVDSIRDFDVETQRSNDNIEKVDITTASDYIITEDVINHLQTKLQKAYEQ 247

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 + P T
Sbjct: 248 TRPKIDKSVRNDLKETYESFKLFESTFFDHQLLRRLVAFMY--------------DTPST 293

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           L +Y   D+++ VDE +        +          L E G           + ++ +  
Sbjct: 294 LIDYFQNDAIVVVDEYNRIKETEKTLATEVDDFIQNLIESGNGFIGQS---FMEYDGFET 350

Query: 521 LRPT------TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           L         T+  S+ P          + ++ II+ +        ++    Q + +  E
Sbjct: 351 LINHYPVTYFTLFTSSMP----------VKLQHIIKFSCKP-----VQQFYGQYDIMRSE 395

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVKTLERIEIIRDLRLGKF 633
                     I++ V T+   E +   L E +I  V  +HS++++               
Sbjct: 396 FQRYVSNNYTIVVLVETETKVERIQSMLNEMHIPTVTNIHSKIES--------------G 441

Query: 634 DVLVGINLLREGLDIPECGLVAILD 658
             +V    L EG ++P   LV I +
Sbjct: 442 QAIVTEGSLSEGFELPYMQLVVITE 466



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 68/184 (36%), Gaps = 11/184 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +  
Sbjct: 770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRDG 829

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + E NI V   H ++   +  E +     G++D+LV  
Sbjct: 830 QVFYLYNKVQSIYEKREQLQMLMPEANIAVA--HGQMTERDLEETMLSFINGEYDILVTT 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I +AD+ G  +    L Q  GR  R+       +  +  K +  
Sbjct: 888 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHSTNKVLTE 943

Query: 700 AIDE 703
             +E
Sbjct: 944 TAEE 947


>gi|227891598|ref|ZP_04009403.1| transcription-repair coupling factor [Lactobacillus salivarius ATCC
           11741]
 gi|227866745|gb|EEJ74166.1| transcription-repair coupling factor [Lactobacillus salivarius ATCC
           11741]
          Length = 1174

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 100/513 (19%), Positives = 211/513 (41%), Gaps = 56/513 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +   +L G+ GS KT  +AK+++  + P +++  +   A QL S+ +N      +E F  
Sbjct: 23  DGRHMLTGLVGSSKTLMIAKLLKDKKVPQLIVESDLYHAQQLQSDLENIIEDTRIELF-- 80

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGS 286
                      P  D  + + ++ + +    R SA  +L   N  IV+++V+ I   + S
Sbjct: 81  -----------PVEDMLVAEMATSSPEYRAQRVSALTALTSENPVIVITTVAGIRRFLPS 129

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE + Q  +QL+IG  V+  EL   L +  Y R ++    G F + G  ++IFP   ++ 
Sbjct: 130 VEYWKQHEIQLEIGKEVDPAELEKKLFEMGYIRSNMVNAPGDFAIRGSIVDIFPLDADN- 188

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F  +I+ +  F     + I NV+ + I   + ++  +  L  A + IK+E   +
Sbjct: 189 PYRIDFFDIEIDSMRTFDIANQRSIENVDQVTIIPATDFIASKEVLELASERIKKEYNKQ 248

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             +L    + ++ ++L + I   L   +          Y+ Y+  ++       L +Y+ 
Sbjct: 249 FSKL----KNIKEEKLTENIQKMLADFKDGFLKAEYLPYAEYIYPQS-----TNLIDYLS 299

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL--RFEEWNCLRPT 524
           ++ L+  D+      +   +   +            R  S  DN  L   F         
Sbjct: 300 DEGLVIFDDYSRLTEKQKNLEYSEADWVTDRL----RTNSLFDNLKLGHDFRSVEKKIKQ 355

Query: 525 T-IVVS-ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             I +S    G   ++  Q  +V+   R          ++    Q+  +  E++   +Q 
Sbjct: 356 PRIFLSLFQKGLGRMKFAQ--LVDIKTRA---------VQKFFGQMPLLKTEVSSWEKQK 404

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             ++  +  +   E +++ L +          E+K++   +    +++G   V+     L
Sbjct: 405 QTVVFLINDRERLEKVSQTLDDF---------EIKSIITDK--NAIQVGVTQVV--QGFL 451

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            EG +IP+  LV + + +    ++ K     T+
Sbjct: 452 NEGFEIPKDKLVVLTENELFSNVKKKQPRRLTM 484



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 75/188 (39%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I    +   P++          + D I    ++G 
Sbjct: 770 VLTLTATPIPRTLNMSMLGVRDLSVIETAPMNRYPIQTYVIEKNYGVIVDGIKREIERGG 829

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E +   L       +V Y+H  +   +   I+ D   G++DVLV   +
Sbjct: 830 QVFYLHNRVDDIEKVASELESLVPEAKVAYIHGRMTETQLENILIDFIDGEYDVLVTTTI 889

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD+ G  +    L Q  GR  R+     I YA  + +  ++  
Sbjct: 890 IETGVDIPNVNTLFVDNADRMGLSQ----LYQLRGRVGRSNR---IAYAYFMYQPNKVLT 942

Query: 702 DETTRRRE 709
           +   +R E
Sbjct: 943 EVAEKRLE 950


>gi|301300308|ref|ZP_07206515.1| transcription-repair coupling factor [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852081|gb|EFK79758.1| transcription-repair coupling factor [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 1174

 Score =  216 bits (551), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 101/513 (19%), Positives = 210/513 (40%), Gaps = 56/513 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +   +L G+ GS KT  +AK+++  + P +++  +   A QL S+ +N      +E F  
Sbjct: 23  DGRHMLTGLVGSSKTLMIAKLLKDKKVPQLIVESDLYHAQQLQSDLENIIEDTRIELF-- 80

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGS 286
                      P  D  + + ++ + +    R SA  +L   N  IV+++V+ I   + S
Sbjct: 81  -----------PVEDMLVAEMATSSPEYRAQRVSALTALTSENPVIVITTVAGIRRFLPS 129

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE + Q  +QL+IG  V+  EL   L +  Y R ++    G F + G  ++IFP   ++ 
Sbjct: 130 VEYWKQHEIQLEIGKEVDPAELEKKLFEMGYIRSNMVNAPGDFAIRGSIVDIFPLDADN- 188

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F  +I+ +  F     + I NVE + I   + ++  +  L  A + IK+E   +
Sbjct: 189 PYRIDFFDIEIDSMRTFDIANQRSIENVEQVTIIPATDFIASKEVLELASEKIKKEYNKQ 248

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             +L    +  + ++L + I   L   +          Y+ Y+   +       L +Y+ 
Sbjct: 249 FSKL----KNTKEEKLTENIQKMLADFKDGFLKAEYLPYAEYIYPES-----TNLIDYLS 299

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL--RFEEWNCLRPT 524
           ++ L+  D+      +   +   +            R  S  DN  L   F         
Sbjct: 300 DEGLVIFDDYSRLTEKQKNLEYSEADWLTDRL----RTNSLFDNLKLGHDFRSVEKKIKQ 355

Query: 525 T-IVVS-ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             I +S    G   ++  Q  +V+   R          ++    Q+  + +E++   +Q 
Sbjct: 356 PRIFLSLFQKGLGRMKFAQ--LVDIKTRA---------VQKFFGQMPLLKNEVSRWEKQK 404

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             ++  +  +   E +++ L +          E+K++   +    +++G   V+     L
Sbjct: 405 QTVVFLINDRERLEKVSQTLDDF---------EIKSIITDK--NAIQVGVTQVV--QGFL 451

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            EG +IP+  LV + + +    ++ K     T+
Sbjct: 452 NEGFEIPKDKLVVLTENELFSNVKKKQPRRLTM 484



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 76/188 (40%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I    +   P++          + D I    ++G 
Sbjct: 770 VLTLTATPIPRTLNMSMLGVRDLSVIETAPMNRYPIQTYVIEKNYGVIVDGIKREIERGG 829

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E +   L       +V Y+H  +   +   I+ D   G++DVLV   +
Sbjct: 830 QVFYLHNRVDDIEKVASELESLVPEAKVAYIHGRMTETQLENILIDFIDGEYDVLVTTTI 889

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD++G  +    L Q  GR  R+     I YA  + +  ++  
Sbjct: 890 IETGVDIPNVNTLFVDNADRKGLSQ----LYQLRGRVGRSNR---IAYAYFMYQPNKVLT 942

Query: 702 DETTRRRE 709
           +   +R E
Sbjct: 943 EVAEKRLE 950


>gi|293366145|ref|ZP_06612832.1| transcription-repair coupling factor [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319739|gb|EFE60098.1| transcription-repair coupling factor [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329737888|gb|EGG74116.1| transcription-repair coupling factor [Staphylococcus epidermidis
           VCU045]
          Length = 1166

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 86/516 (16%), Positives = 193/516 (37%), Gaps = 64/516 (12%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            ++  L+ G++ S K   +A+      +  +++  N   A ++ ++   +   + V  + 
Sbjct: 20  GQENILVTGLSPSAKATIIAEKYLKDHKQMLLVTNNLYQADKIETDILQYVDDSEVYKY- 78

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++     + 
Sbjct: 79  ------------PVQDIMTEEFSTQSPQLMSERVRTLTALAQGEKGLFIVPLNGFKKWLT 126

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            V+ +    + LK+G  ++    L+ LV   Y+R+ +    G F + G  I+I+P     
Sbjct: 127 PVDLWKDHQMTLKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIG-- 184

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +++ I +F   T +   N+  ++I   S Y+     +      +K+  + 
Sbjct: 185 TPVRIELFDTEVDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNELKKAYEY 244

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              ++EK  R       E+ +L +   +D ++L           +  ++      E P T
Sbjct: 245 TRPKIEKSVRNDLKETYESFKLFESTFFDHQLLR---------RFVSFMY-----EKPST 290

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           L +Y  +++++ VDE +        +        + L E G           +++E ++ 
Sbjct: 291 LIDYFQKNAIIVVDEFNRIKETEETLTTEVEDFMSNLIESGNGFIGQG---FMKYESFDA 347

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           L     V   T           + ++ II+ +        ++    Q + +  E      
Sbjct: 348 LLEQHAVAYFTL----FTSSMQVPLQHIIKFSCKP-----VQQFYGQYDIMRSEFQRYVH 398

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q   +++ V T+   E +   L E +I  V  +H ++                  V+V  
Sbjct: 399 QDYTVVVLVETETKVERIQSMLNEMHIPTVSNIHEDIDG--------------GQVVVTE 444

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             L EG ++P   LV I   ++E F   +    +  
Sbjct: 445 GSLSEGFELPYMQLVVI--TERELFKTRQKKQRKRT 478



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 11/184 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +  
Sbjct: 767 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDG 826

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 827 QVFYLYNKVQSIYEKREQLQRLMPDANIAVA--HGQMTERDLEETMLSFINHEYDILVTT 884

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I +AD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 885 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPANKVLNE 940

Query: 700 AIDE 703
             +E
Sbjct: 941 TAEE 944


>gi|194467674|ref|ZP_03073661.1| transcription-repair coupling factor [Lactobacillus reuteri 100-23]
 gi|194454710|gb|EDX43607.1| transcription-repair coupling factor [Lactobacillus reuteri 100-23]
          Length = 1179

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 91/517 (17%), Positives = 204/517 (39%), Gaps = 45/517 (8%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +  QL+ G++GS +T  ++ + +  Q+P +V+        +L S+ +N  P N V  F  
Sbjct: 24  KHHQLITGISGSARTELLSALSKEGQQPILVVTDTISHMQELASDLENLLPANHVYQF-- 81

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGS 286
                      P  +    + ++ +      R  A  +L+ R   +VV+S + +   I S
Sbjct: 82  -----------PVEEVLAAEVATSSPNYRLQRVLALNALINREPAVVVASAAGLRRNIIS 130

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            E ++Q  +++K G  V+  ++   L    Y+ Q + +  G F + G  I+I+ +   D 
Sbjct: 131 PEYFAQSSLKIKTGGEVDPAKIRQQLSAMGYQYQKMVLRPGDFAIRGSIIDIY-ALNTDN 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +F  +++ +  F   T + I NVE ++I   + ++ P P  +   + +  E K  
Sbjct: 190 PVRIDLFDTEVDSLRYFDASTQRSIDNVEEVQILPATDFIIPSPEFSRVAEALDAEYKKV 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           + EL  +   +  Q++  R    L  L+       +  +S  +          +LF+Y+P
Sbjct: 250 VKELSADDADI-KQQVANRFEPLLNALKNQHLPNELLEFSNLVYPAK-----HSLFDYLP 303

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
           +D  ++ D+          M + D         +       + + P    + + +    +
Sbjct: 304 DDGTIYFDDLTRIKQFAKQMTQEDVGWFKDKVAH-----HQLTDVPDLSNDVSTIIKKDL 358

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                P  +     +G+   ++ + T L      ++    Q+  +  E+     QG  ++
Sbjct: 359 H----PQIYGALFKKGLGNIKLSQITDLKSR--TMQRFFGQMPLLKAELQRWIDQGQTVV 412

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L   +    + + + L + +I                 + +++     ++     L  G 
Sbjct: 413 LMANSPERRKQIAQTLADFDITAT-----------ETELTNIKPNVVQIV--AANLNNGF 459

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++P  GLV I +++    ++      Q +  A R  N
Sbjct: 460 EMPLAGLVVITESEMFKQVKKVHHRPQKLANAERLKN 496



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 67/174 (38%), Gaps = 7/174 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          + D I    Q+G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVLETPPAGRYPIQTYVMEQNSGAIRDGIIREMQRGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E+   +L E     R  Y++ ++   E   ++ +   G +DVLV  ++
Sbjct: 834 QVYYLHNRVHDIEETVAWLQELVPEARIGYINGQMSENELETVLYEFIQGNYDVLVTTSI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  G+DIP    + + +AD+ G  +    L Q  GR  R+       +     K
Sbjct: 894 IETGVDIPNANTLFVENADRMGLAQ----LYQIRGRIGRSNRVAYAYFMYQPNK 943


>gi|302332216|gb|ADL22409.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 1168

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 90/502 (17%), Positives = 193/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++   F     +  + 
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQFIDAEDLYKY- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 81  ------------PVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   N+E + I   S Y+     ++   + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVISHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIDYFQKDAIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +          
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHP----ANK 938

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 939 VLTETAEDRLQAIKEFTELG 958



 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|323706238|ref|ZP_08117805.1| transcription-repair coupling factor [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534402|gb|EGB24186.1| transcription-repair coupling factor [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 1166

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/540 (13%), Positives = 205/540 (37%), Gaps = 47/540 (8%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           ++ + +       L+ G+T S K      +++ + +  + +  N + A  ++ +  +   
Sbjct: 14  EINEALTDERLPLLIYGLTDSQKAHIAHYIVKKLNKKVLFITYNDVEAKLMHEDLSSLLN 73

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
            +A                +P  D    K  + +  I   + +A R +++      V+S+
Sbjct: 74  GDA--------------YLIPSRDALFYKVDASSLDITGKKLAAIRRIIDDKPYAFVASI 119

Query: 279 SCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             +   +   + + +     KIGD V+  E+ S  V   Y+R  +   +G F + G  I+
Sbjct: 120 DGVLNKVAPKDVFLKYKRNYKIGDKVDLNEISSFFVTMGYERVPMVEGKGQFSIRGGIID 179

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
            F S +E+  +R+ +F ++I+ I  F   T + + NV+ ++++    ++     +   + 
Sbjct: 180 FF-SPMEEEGFRIELFDDEIDSIRSFDTFTQRSLDNVDEVELFPAREFILEDENIKKGLS 238

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            +  ++   + ++++  +   A++++++    +E +  T +  +I     +       + 
Sbjct: 239 NLSSKVNSYISKIKET-QSGRAEKIKKKFDEIMENISETRNITNIGELIGFFY-----DN 292

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
             ++ +Y  +D+ + VDE+     + S + +       +L   G  +P   +      + 
Sbjct: 293 LYSIVDYF-DDAFIIVDENMRVKERASNILKEFNENFKSLLLSGEVIPEQSNLLFGYDDI 351

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDVYDEIN 576
              L   ++++  T           +  ++ I+   +V+     +     +++ + D++ 
Sbjct: 352 LRKLSGKSLILMNT----------IVKSDENIQAKEIVNFVSRTMHPFHGKLDLLADDLK 401

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G ++++        + L   L    + V  +  E   +            +  VL
Sbjct: 402 FYRSSGYKVVMLSSNLERGKLLRNSLIGYGLEVPIIEDEEYDIP-----------EGGVL 450

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI--GRAARNVNSKVILYADTIT 694
           +    + +G +  +     I D +  G  R     ++    GR        V  Y   + 
Sbjct: 451 IYPGTISKGFEYVDAKFALISDVEIFGQSRRPKRSVKVKSDGRIKNFTELTVGSYVVHVN 510



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 88/248 (35%), Gaps = 15/248 (6%)

Query: 525  TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             + +SATP    L      I +  ++        PV+        + + D I     +G 
Sbjct: 774  VLSLSATPIPRTLHMSLIGIRDMSVLENPPEDRYPVQTYVVEFNEDLIRDAILRELGRGG 833

Query: 584  RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
            ++          E +   L E     R    H ++   +  +I+      ++D+LV   +
Sbjct: 834  QVYFVYNRIDGIERIASILKELVPEARIAVAHGQMDEGKLEDIMIGFLNREYDILVCTTI 893

Query: 642  LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            +  GLDIP    + + D+DK G  +    L Q  GR  R+       +     K     I
Sbjct: 894  IETGLDIPNVNTIIVYDSDKMGLSQ----LYQLRGRVGRSNRLAYAYFTYRKDK----VI 945

Query: 702  DETTRRREKQLEHNKKHNINPQSVKEKIMEV-IDPILLEDAATTNISIDAQQLSLSKKKG 760
             E   +R + ++   +        K  + ++ I        A  +  IDA    +  +  
Sbjct: 946  SEVAEKRLEAIKEFTEFG---SGFKIAMRDLEIRGAGNLLGAEQHGHIDAVGYDMYLRLL 1002

Query: 761  KAHLKSLR 768
               +K+L+
Sbjct: 1003 DEAIKNLK 1010


>gi|90962332|ref|YP_536248.1| transcription-repair coupling factor [Lactobacillus salivarius
           UCC118]
 gi|90821526|gb|ABE00165.1| Transcription-repair coupling factor [Lactobacillus salivarius
           UCC118]
          Length = 1174

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 100/513 (19%), Positives = 211/513 (41%), Gaps = 56/513 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +   +L G+ GS KT  +AK+++  + P +++  +   A QL S+ +N      +E F  
Sbjct: 23  DGRHMLTGLVGSSKTLMIAKLLKDKKVPQLIVESDLYHAQQLQSDLENIIEDTRIELF-- 80

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGS 286
                      P  D  + + ++ + +    R SA  +L   N  IV+++V+ I   + S
Sbjct: 81  -----------PVEDMLVAEMATSSPEYRAQRVSALTALTSENPVIVITTVAGIRRFLPS 129

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE + Q  +QL+IG  V+  EL   L +  Y R ++    G F + G  ++IFP   ++ 
Sbjct: 130 VEYWKQHEIQLEIGKEVDPAELEKKLFEMGYIRSNMVNAPGDFAIRGSIVDIFPLDADN- 188

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F  +I+ +  F     + I NV+ + I   + ++  +  L  A + IK+E   +
Sbjct: 189 PYRIDFFDIEIDSMRTFDIANQRSIENVDQVTIIPATDFIASKEVLELASERIKKEYNKQ 248

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             +L    + ++ ++L + I   L   +          Y+ Y+  ++       L +Y+ 
Sbjct: 249 FSKL----KNIKEEKLTENIQKMLADFKDGFLKAEYLPYAEYIYPQS-----TNLIDYLS 299

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL--RFEEWNCLRPT 524
           ++ L+  D+      +   +   +            R  S  DN  L   F         
Sbjct: 300 DEGLVIFDDYSRLTEKQKNLEYSEADWVTDKL----RTNSLFDNLKLGHDFRSVEKKIKQ 355

Query: 525 T-IVVS-ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             I +S    G   ++  Q  +V+   R          ++    Q+  +  E++   +Q 
Sbjct: 356 PRIFLSLFQKGLGRMKFAQ--LVDIKTRA---------VQKFFGQMPLLKTEVSRWEKQK 404

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             ++  +  +   E +++ L +          E+K++   +    +++G   V+     L
Sbjct: 405 QTVVFLINDRERLEKVSQTLDDF---------EIKSIITDK--NAIQVGVTQVV--QGFL 451

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            EG +IP+  LV + + +    ++ K     T+
Sbjct: 452 NEGFEIPKDKLVVLTENELFSNVKKKQPRRLTM 484



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 75/188 (39%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I    +   P++          + D I    ++G 
Sbjct: 770 VLTLTATPIPRTLNMSMLGVRDLSVIETAPMNRYPIQTYVIEKNYGVIVDGIKREIERGG 829

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E +   L       +V Y+H  +   +   I+ D   G++DVLV   +
Sbjct: 830 QVFYLHNRVDDIEKVASELESLVPEAKVAYIHGRMTETQLENILIDFIDGEYDVLVTTTI 889

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD+ G  +    L Q  GR  R+     I YA  + +  ++  
Sbjct: 890 IETGVDIPNVNTLFVDNADRMGLSQ----LYQLRGRVGRSNR---IAYAYFMYQPNKVLT 942

Query: 702 DETTRRRE 709
           +   +R E
Sbjct: 943 EVAEKRLE 950


>gi|329723937|gb|EGG60462.1| transcription-repair coupling factor [Staphylococcus epidermidis
           VCU144]
          Length = 1166

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 86/516 (16%), Positives = 192/516 (37%), Gaps = 64/516 (12%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            ++  L+ G++ S K   +A+      +  +++  N   A ++ ++   +   + V  + 
Sbjct: 20  GQENILVTGLSPSAKATIIAEKYLKDHKQMLLVTNNLYQADKIETDILQYVDDSEVYKY- 78

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++     + 
Sbjct: 79  ------------PVQDIMTEEFSTQSPQLMSERVRTLTALAQGEKGLFIVPLNGFKKWLT 126

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            V+ +    + LK+G  ++    L+ LV   Y+R+ +    G F + G  I+I+P     
Sbjct: 127 PVDLWKDHQMTLKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIG-- 184

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +++ I +F   T +   N+  ++I   S Y+     +      +K+  + 
Sbjct: 185 TPVRIELFDTEVDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNELKKAYEY 244

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              ++EK  R       E+ +L +   +D ++L              ++      E P T
Sbjct: 245 TRPKIEKSVRNDLKETYESFKLFESTFFDHQLLR---------RLVSFMY-----EKPST 290

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           L +Y  +++++ VDE +        +        + L E G           +++E ++ 
Sbjct: 291 LIDYFQKNAIIVVDEFNRIKETEETLTTEVEDFMSNLIESGNGFIGQG---FMKYESFDA 347

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           L     V   T           + ++ II+ +        ++    Q + +  E      
Sbjct: 348 LLEQHAVAYFTL----FTSSMQVPLQHIIKFSCKP-----VQQFYGQYDIMRSEFQRYVH 398

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q   +++ V T+   E +   L E +I  V  +H ++                  V+V  
Sbjct: 399 QDYTVVVLVETETKVERIQSMLNEMHIPTVSNIHEDIDG--------------GQVVVTE 444

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             L EG ++P   LV I   ++E F   +    +  
Sbjct: 445 GSLSEGFELPYMQLVVI--TERELFKTRQKKQRKRT 478



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 11/184 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +  
Sbjct: 767 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDG 826

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 827 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINHEYDILVTT 884

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I +AD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 885 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPANKVLNE 940

Query: 700 AIDE 703
             +E
Sbjct: 941 TAEE 944


>gi|329733010|gb|EGG69349.1| transcription-repair coupling factor [Staphylococcus epidermidis
           VCU028]
          Length = 1166

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 86/516 (16%), Positives = 192/516 (37%), Gaps = 64/516 (12%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            ++  L+ G++ S K   +A+      +  +++  N   A ++ ++   +   + V  + 
Sbjct: 20  GQENILVTGLSPSAKATIIAEKYLKDHKQMLLVTNNLYQADKIETDILQYVDDSEVYKY- 78

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++     + 
Sbjct: 79  ------------PVQDIMTEEFSTQSPQLMSERVRTLTALAQGEKGLFIVPLNGFKKWLT 126

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            V+ +    + LK+G  ++    L+ LV   Y+R+ +    G F + G  I+I+P     
Sbjct: 127 PVDLWKDHQMTLKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIG-- 184

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +++ I +F   T +   N+  ++I   S Y+     +      +K+  + 
Sbjct: 185 TPVRIELFDTEVDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNELKKAYEY 244

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              ++EK  R       E+ +L +   +D ++L              ++      E P T
Sbjct: 245 TRPKIEKSVRNDLKETYESFKLFESTFFDHQLLR---------RLVSFMY-----EKPST 290

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           L +Y  +++++ VDE +        +        + L E G           +++E ++ 
Sbjct: 291 LIDYFQKNAIIVVDEFNRIKETEETLTTEVEDFMSNLIESGNGFIGQG---FMKYESFDA 347

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           L     V   T           + ++ II+ +        ++    Q + +  E      
Sbjct: 348 LLEQHAVAYFTL----FTSSMQVPLQHIIKFSCKP-----VQQFYGQYDIMRSEFQRYVH 398

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q   +++ V T+   E +   L E +I  V  +H ++                  V+V  
Sbjct: 399 QDYTVVVLVETETKVERIQSMLNEMHIPTVSNIHEDIDG--------------GQVVVTE 444

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             L EG ++P   LV I   ++E F   +    +  
Sbjct: 445 GSLSEGFELPYMQLVVI--TERELFKTRQKKQRKRT 478



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 11/184 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +  
Sbjct: 767 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDG 826

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 827 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINHEYDILVTT 884

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I +AD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 885 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPANKVLNE 940

Query: 700 AIDE 703
             +E
Sbjct: 941 TAEE 944


>gi|258424461|ref|ZP_05687340.1| transcription-repair coupling factor [Staphylococcus aureus A9635]
 gi|257845330|gb|EEV69365.1| transcription-repair coupling factor [Staphylococcus aureus A9635]
          Length = 1168

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 90/502 (17%), Positives = 193/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++   F     +  + 
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQFIDAEELYKY- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 81  ------------PVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   N+E + I   S Y+     ++   + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVISHLKEELKSAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIDYFQKDAIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +          
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHP----ANK 938

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 939 VLTETAEDRLQAIKEFTELG 958



 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|27469198|ref|NP_765835.1| transcription-repair coupling factor [Staphylococcus epidermidis
           ATCC 12228]
 gi|81842450|sp|Q8CMT1|MFD_STAES RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|27316747|gb|AAO05922.1|AE016751_217 transcription-repair coupling factor [Staphylococcus epidermidis
           ATCC 12228]
          Length = 1169

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 86/516 (16%), Positives = 192/516 (37%), Gaps = 64/516 (12%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            ++  L+ G++ S K   +A+      +  +++  N   A ++ ++   +   + V  + 
Sbjct: 23  GQENILVTGLSPSAKATIIAEKYLKDHKQMLLVTNNLYQADKIETDILQYVDDSEVYKY- 81

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++     + 
Sbjct: 82  ------------PVQDIMTEEFSTQSPQLMSERVRTLTALAQGEKGLFIVPLNGFKKWLT 129

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            V+ +    + LK+G  ++    L+ LV   Y+R+ +    G F + G  I+I+P     
Sbjct: 130 PVDLWKDHQMTLKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIG-- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +++ I +F   T +   N+  ++I   S Y+     +      +K+  + 
Sbjct: 188 TPVRIELFDTEVDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNELKKAYEY 247

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              ++EK  R       E+ +L +   +D ++L              ++      E P T
Sbjct: 248 TRPKIEKSVRNDLKETYESFKLFESTFFDHQLLR---------RLVSFMY-----EKPST 293

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           L +Y  +++++ VDE +        +        + L E G           +++E ++ 
Sbjct: 294 LIDYFQKNAIIVVDEFNRIKETEETLTTEVEDFMSNLIESGNGFIGQG---FMKYESFDA 350

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           L     V   T           + ++ II+ +        ++    Q + +  E      
Sbjct: 351 LLEQHAVAYFTL----FTSSMQVPLQHIIKFSCKP-----VQQFYGQYDIMRSEFQRYVH 401

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q   +++ V T+   E +   L E +I  V  +H ++                  V+V  
Sbjct: 402 QDYTVVVLVETETKVERIQSMLNEMHIPTVSNIHEDIDG--------------GQVVVTE 447

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             L EG ++P   LV I   ++E F   +    +  
Sbjct: 448 GSLSEGFELPYMQLVVI--TERELFKTRQKKQRKRT 481



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 11/184 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +  
Sbjct: 770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDG 829

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 830 QVFYLYNKVQSIYEKREQLQRLMPDANIAVA--HGQMTERDLEETMLSFINHEYDILVTT 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I +AD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 888 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPANKVLNE 943

Query: 700 AIDE 703
             +E
Sbjct: 944 TAEE 947


>gi|57866056|ref|YP_187737.1| transcription-repair coupling factor [Staphylococcus epidermidis
           RP62A]
 gi|81819455|sp|Q5HRQ2|MFD_STAEQ RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|57636714|gb|AAW53502.1| transcription-repair coupling factor [Staphylococcus epidermidis
           RP62A]
          Length = 1169

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 86/516 (16%), Positives = 192/516 (37%), Gaps = 64/516 (12%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            ++  L+ G++ S K   +A+      +  +++  N   A ++ ++   +   + V  + 
Sbjct: 23  GQENILVTGLSPSAKATIIAEKYLKDHKQMLLVTNNLYQADKIETDILQYVDDSEVYKY- 81

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++     + 
Sbjct: 82  ------------PVQDIMTEEFSTQSPQLMSERVRTLTALAQGEKGLFIVPLNGFKKWLT 129

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            V+ +    + LK+G  ++    L+ LV   Y+R+ +    G F + G  I+I+P     
Sbjct: 130 PVDLWKDHQMTLKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIG-- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +++ I +F   T +   N+  ++I   S Y+     +      +K+  + 
Sbjct: 188 TPVRIELFDTEVDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNELKKAYEY 247

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              ++EK  R       E+ +L +   +D ++L              ++      E P T
Sbjct: 248 TRPKIEKSVRNDLKETYESFKLFESTFFDHQLLR---------RLVSFMY-----EKPST 293

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           L +Y  +++++ VDE +        +        + L E G           +++E ++ 
Sbjct: 294 LIDYFQKNAIIVVDEFNRIKETEETLTTEVEDFMSNLIESGNGFIGQG---FMKYESFDA 350

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           L     V   T           + ++ II+ +        ++    Q + +  E      
Sbjct: 351 LLEQHAVAYFTL----FTSSMQVPLQHIIKFSCKP-----VQQFYGQYDIMRSEFQRYVH 401

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q   +++ V T+   E +   L E +I  V  +H ++                  V+V  
Sbjct: 402 QDYTVVVLVETETKVERIQSMLNEMHIPTVSNIHEDIDG--------------GQVVVTE 447

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             L EG ++P   LV I   ++E F   +    +  
Sbjct: 448 GSLSEGFELPYMQLVVI--TERELFKTRQKKQRKRT 481



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 11/184 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +  
Sbjct: 770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDG 829

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 830 QVFYLYNKVQSIYEKREQLQRLMPDANIAVA--HGQMTERDLEETMLSFINHEYDILVTT 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I +AD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 888 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPANKVLNE 943

Query: 700 AIDE 703
             +E
Sbjct: 944 TAEE 947


>gi|148543499|ref|YP_001270869.1| transcription-repair coupling factor [Lactobacillus reuteri DSM
           20016]
 gi|227363648|ref|ZP_03847762.1| transcription-repair coupling factor [Lactobacillus reuteri MM2-3]
 gi|325681843|ref|ZP_08161362.1| transcription-repair coupling factor [Lactobacillus reuteri MM4-1A]
 gi|148530533|gb|ABQ82532.1| transcription-repair coupling factor [Lactobacillus reuteri DSM
           20016]
 gi|227071317|gb|EEI09626.1| transcription-repair coupling factor [Lactobacillus reuteri MM2-3]
 gi|324978934|gb|EGC15882.1| transcription-repair coupling factor [Lactobacillus reuteri MM4-1A]
          Length = 1179

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 91/530 (17%), Positives = 206/530 (38%), Gaps = 46/530 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            +  Q+   +  +   QL+ G++GS +T  ++ + +  QRP +V+        +L S+ +
Sbjct: 12  PSFKQITADLQPK-NHQLITGISGSARTELLSALSKEGQRPILVVTDTISHMQELASDLE 70

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           N  P N V  F             P  +    + ++ +      R  A  +L+     +V
Sbjct: 71  NLLPANRVYQF-------------PVEEVLAAEVATSSPNYRLQRVLALNALINNEPAVV 117

Query: 275 VSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S + +   I S E ++Q  +++K G  V+  ++   L    Y+ Q + +  G F + G
Sbjct: 118 VASAAGLRRNIISPEYFAQSSLKIKTGGEVDPVKIRQQLSAMGYQYQKMVLRPGDFAIRG 177

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+I+ +   D   R+ +F  +++ +  F   T + I NVE ++I   + ++ P    +
Sbjct: 178 SIIDIY-ALNTDNPVRIDLFDTEVDSLRYFDASTQRSIDNVEEVQILPATDFIIPATEFS 236

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
              + +  E K  + EL  +   +  Q++  R    L  L+       +  +S  +    
Sbjct: 237 RVYEALDTEYKKVVKELSADDADI-KQQVANRFEPLLNALKNQHLPNELLEFSNLVYPTK 295

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
                 +LF+Y+P+D  ++ D+          M + D         +       + + P 
Sbjct: 296 -----HSLFDYLPDDGTIYFDDLTRIKQFAKQMTQEDAGWFKDKVAH-----HQLTDVPD 345

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
              + + +    +     P  +     +G+   ++ + T L      ++    Q+  +  
Sbjct: 346 LSNDVSTIIKKDLH----PQIYGALFKKGLGNIKLSQITDLKSR--TMQRFFGQMPLLKA 399

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E+     QG  ++L   +    + + + L + +I                 + +++    
Sbjct: 400 ELQRWIDQGQTVILMANSPERRKQIAQTLADFDITAT-----------ETELTNIKPNVV 448

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            ++     L  G ++P  GLV I +++    ++      Q +  A R  N
Sbjct: 449 QIV--AANLNNGFEMPLAGLVVITESEMFKQVKRVHHRPQKLANAERLKN 496



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 67/174 (38%), Gaps = 7/174 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          + D I    Q+G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVLETPPAGRYPIQTYVMEQNSSAIRDGIIREMQRGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E+   +L E     R  Y++ ++   E   ++ +   G +DVLV  ++
Sbjct: 834 QVYYLHNRVHDIEETVAWLQELVPEARIGYINGQMSENELETVLYEFIQGNYDVLVTTSI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  G+DIP    + + +AD+ G  +    L Q  GR  R+       +     K
Sbjct: 894 IETGVDIPNANTLFVENADRMGLAQ----LYQIRGRIGRSNRVAYAYFMYQPNK 943


>gi|323438735|gb|EGA96475.1| transcription-repair coupling factor [Staphylococcus aureus O11]
 gi|323442053|gb|EGA99688.1| transcription-repair coupling factor [Staphylococcus aureus O46]
          Length = 1168

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 91/503 (18%), Positives = 195/503 (38%), Gaps = 70/503 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++            FV
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQ---------FV 72

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
              + Y+     P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 73  DAEELYK----YPVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   N+E + I   S Y+     ++   + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVISHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIDYFQKDAIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEI 575
           L    P T   + AT    +L                ++  P + ++    Q + +  E 
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------------IIKFPCKPVQQFYGQYDIMRSEF 395

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                Q   I++ V T+   E +   L E +I               ++ R +  G+   
Sbjct: 396 QRYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--A 442

Query: 636 LVGINLLREGLDIPECGLVAILD 658
           ++    L EG ++P+ GLV I +
Sbjct: 443 VIIEGSLSEGFELPDMGLVVITE 465



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +          
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHP----ANK 938

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 939 VLTETAEDRLQAIKEFTELG 958



 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|329731067|gb|EGG67439.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 1168

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 90/502 (17%), Positives = 193/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++   F     +  + 
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQFIDAEELYKY- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 81  ------------PVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   N+E + I   S Y+     ++   + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVISHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIDYFQKDAIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +          
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHP----ANK 938

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 939 VLTETAEDRLQAIKEFTELG 958



 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 14/139 (10%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVE 223
           LA Q Y           VE
Sbjct: 679 LAQQHYETLIERMQDFPVE 697


>gi|184152907|ref|YP_001841248.1| transcription-repair coupling factor [Lactobacillus reuteri JCM
           1112]
 gi|183224251|dbj|BAG24768.1| transcription-repair coupling factor [Lactobacillus reuteri JCM
           1112]
          Length = 1178

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 91/530 (17%), Positives = 206/530 (38%), Gaps = 46/530 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            +  Q+   +  +   QL+ G++GS +T  ++ + +  QRP +V+        +L S+ +
Sbjct: 11  PSFKQITADLQPK-NHQLITGISGSARTELLSALSKEGQRPILVVTDTISHMQELASDLE 69

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           N  P N V  F             P  +    + ++ +      R  A  +L+     +V
Sbjct: 70  NLLPANRVYQF-------------PVEEVLAAEVATSSPNYRLQRVLALNALINNEPAVV 116

Query: 275 VSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S + +   I S E ++Q  +++K G  V+  ++   L    Y+ Q + +  G F + G
Sbjct: 117 VASAAGLRRNIISPEYFAQSSLKIKTGGEVDPVKIRQQLSAMGYQYQKMVLRPGDFAIRG 176

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+I+ +   D   R+ +F  +++ +  F   T + I NVE ++I   + ++ P    +
Sbjct: 177 SIIDIY-ALNTDNPVRIDLFDTEVDSLRYFDASTQRSIDNVEEVQILPATDFIIPATEFS 235

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
              + +  E K  + EL  +   +  Q++  R    L  L+       +  +S  +    
Sbjct: 236 RVYEALDTEYKKVVKELSADDADI-KQQVANRFEPLLNALKNQHLPNELLEFSNLVYPTK 294

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
                 +LF+Y+P+D  ++ D+          M + D         +       + + P 
Sbjct: 295 -----HSLFDYLPDDGTIYFDDLTRIKQFAKQMTQEDAGWFKDKVAH-----HQLTDVPD 344

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
              + + +    +     P  +     +G+   ++ + T L      ++    Q+  +  
Sbjct: 345 LSNDVSTIIKKDLH----PQIYGALFKKGLGNIKLSQITDLKSR--TMQRFFGQMPLLKA 398

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E+     QG  ++L   +    + + + L + +I                 + +++    
Sbjct: 399 ELQRWIDQGQTVILMANSPERRKQIAQTLADFDITAT-----------ETELTNIKPNVV 447

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            ++     L  G ++P  GLV I +++    ++      Q +  A R  N
Sbjct: 448 QIV--AANLNNGFEMPLAGLVVITESEMFKQVKRVHHRPQKLANAERLKN 495



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 67/174 (38%), Gaps = 7/174 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          + D I    Q+G 
Sbjct: 773 VLTLTATPIPRTLHMSMLGVRDLSVLETPPAGRYPIQTYVMEQNSSAIRDGIIREMQRGG 832

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E+   +L E     R  Y++ ++   E   ++ +   G +DVLV  ++
Sbjct: 833 QVYYLHNRVHDIEETVAWLQELVPEARIGYINGQMSENELETVLYEFIQGNYDVLVTTSI 892

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  G+DIP    + + +AD+ G  +    L Q  GR  R+       +     K
Sbjct: 893 IETGVDIPNANTLFVENADRMGLAQ----LYQIRGRIGRSNRVAYAYFMYQPNK 942


>gi|241896607|ref|ZP_04783903.1| transcription-repair coupling factor [Weissella paramesenteroides
           ATCC 33313]
 gi|241870088|gb|EER73839.1| transcription-repair coupling factor [Weissella paramesenteroides
           ATCC 33313]
          Length = 1166

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 92/577 (15%), Positives = 199/577 (34%), Gaps = 64/577 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A+ +L  G+    +  L+ G++G+ +T  +A + +  Q+P ++++ ++  A QL  +
Sbjct: 9   QDKALQELATGLTKGGR-HLMTGISGTARTVYLAALQQRTQQPMVIVSDSQFHADQLAED 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            +    +  V  F             P  ++   + +  +      R SA   LL     
Sbjct: 68  LQALLGNEHVAVF-------------PAEESLAAEMAVTSLDTRLARVSALHLLLTDPQA 114

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           +VV+ ++     +  V+ + Q  + +      E K+L   L +  Y R       G F +
Sbjct: 115 VVVTGIAGAQRYLPPVKKFQQAQLTIDFDHEYELKDLEIKLHQMGYHRNTTVEQPGEFAI 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++++P    D   R+  F  +++ +  F     + I+N++++ I   +  V     
Sbjct: 175 RGSIVDVYPLDA-DYPVRLDFFDTELDSMRSFDAENQRSIKNIDSLTILPAADLVLSDDD 233

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
              A   ++  +  +  +L       E + L + IT  L  L        +  Y   L  
Sbjct: 234 RQKAKTQLELAMTKQRDQLAGA----EKRHLTEAITPLLTTLADGQILPEMRAYLHMLYP 289

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
                   +LF+Y+P + ++  D+    I   + M   D +  A   +    L +     
Sbjct: 290 DA-----ASLFDYLPVNGIVVFDDYPRAIENAAQMRLDDTNWWAEKLDKQQVLTTA---- 340

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQV 568
               +    L      +       +       +   I +        V +R  +    Q+
Sbjct: 341 ----DFGWSLTDQARDI------QQASLIFSPLQRGIGQLRQTSLTNVTLRPTQQFFGQM 390

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             +  E+    +Q + ++    +      L + L +  I+V  +  +     R +     
Sbjct: 391 PLLKGEVTRWQKQNMTVIFLTNSDDRQVKLVQTLNDFGIKVNQVPVDGLATGRTQS---- 446

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSK 685
                        L  G ++P   LV + + +    +R +    QT+    R       K
Sbjct: 447 ---------ATLPLSAGFELPMQKLVVLTEKELFQQVRKRAPKRQTLSNAERIKSYNELK 497

Query: 686 VILYADTITK--SIQLAIDETTRRREKQ----LEHNK 716
              Y   +     I   +     R  KQ    + + K
Sbjct: 498 PGDYVVNVNHGIGIYEGMQTIENRGVKQDYITIAYQK 534



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 72/186 (38%), Gaps = 10/186 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I     +G 
Sbjct: 770 VLTLTATPIPRTLNMAMVGVRDLSVIETPPANRYPIQTYVMEQNGRVIANAIEREMARGG 829

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +           E +   +       +V Y+H ++   +   I+ D   G++DVLV   +
Sbjct: 830 QTFYLHNRVADIEKVAGMIQSLVPEAQVAYIHGQMTETQMEGILVDFINGEYDVLVTTTI 889

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G  +    L Q  GR  R+ N     +    T+S+    
Sbjct: 890 IETGVDIPNANTLFVENADYMGLAQ----LYQLRGRVGRSNNVAYAYFTYPGTRSLN--- 942

Query: 702 DETTRR 707
           +E+ +R
Sbjct: 943 EESEKR 948


>gi|49482730|ref|YP_039954.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|295427037|ref|ZP_06819674.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|81828081|sp|Q6GJG8|MFD_STAAR RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|49240859|emb|CAG39526.1| putative transcription-repair coupling factor [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|295129040|gb|EFG58669.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 1168

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 92/502 (18%), Positives = 195/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++            FV
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQ---------FV 72

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
              + Y+     P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 73  DVEELYK----YPVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   N+E + I   S Y+     ++   + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVISHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIDYFQKDAIIAVDEFNRIKETEESLTVESDSFISNVIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +          
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHP----ANK 938

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 939 VLTETAEDRLQAIKEFTELG 958



 Score = 38.9 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|218134568|ref|ZP_03463372.1| hypothetical protein BACPEC_02471 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989953|gb|EEC55964.1| hypothetical protein BACPEC_02471 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1177

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 115/634 (18%), Positives = 233/634 (36%), Gaps = 72/634 (11%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             + KG+  +    +L G   SGK   +  +         ++  ++  A ++  + + FF
Sbjct: 21  ESITKGLSVQGSAMMLSGCIDSGKAHMIQALGADAFCRV-IITYDEAKAREIVDDSR-FF 78

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE--RNDCIVV 275
             N V Y              P  D         + ++   R  A R+++E   +  +V 
Sbjct: 79  NRNTVFY--------------PAKDLIFYSADIRSNELTSQRMKAIRAIIENEGDLTVVT 124

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +   C   + + E     I+  + G  V+  +L   LV   Y+        G F V G  
Sbjct: 125 TIDGCADMLMTREKLESGILTFEEGGIVDLAQLKKQLVLLGYENMGQVQAPGEFGVRGGI 184

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+IFP   ++   R+ ++ ++I+ I  F   + + I  ++ + IY  + YV  +  ++  
Sbjct: 185 IDIFPL-TDETPVRIELWDDEIDSIRSFDVESQRSIERLQKVTIYPATEYVLTQVEIDDG 243

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +  I +E+  +    +K  +  E  RL+       E  +       I+ +          
Sbjct: 244 VAAINDEVAKQADIFKKADKYEELSRLKAIPDNFNETTD-------IDKFVHSFVK---- 292

Query: 456 EPPPTLFEYIPEDSLLFV-DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
               +L EY   ++ LFV DE +    ++  +            E G+ +PS  D     
Sbjct: 293 -DTVSLIEYFDRETTLFVLDEPNRIAERMELVEFEFTDSTKNRLEKGYIIPSQADMIFTC 351

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            E +  +    ++V +T    E +     I E        VD    I S   + E +  +
Sbjct: 352 REIYAKVNCRRLLVVST---LEYKPNGLDIAEHF-----KVDSK-SISSYNNRFEYLVAD 402

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +    + G RI+L   ++  A  + + L +  I   +           +  + L  G+  
Sbjct: 403 LKKYKKSGYRIVLISNSRTRAMRMVDDLRDNGIDSYF---------SEDYDKALVEGE-- 451

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGF--LRSKTSLIQTIGRAARNVNSKVI----- 687
           ++V    + +G + P    V I ++D  G      K    Q  G+A  + N   I     
Sbjct: 452 IMVTYGNIHKGFEYPIVKFVVIAESDIFGQEKKDKKRRKKQYNGKAIADFNELAIGDYVV 511

Query: 688 --LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN 745
              Y   I + I+    E   R   ++E++     +   +    ++V+      DA    
Sbjct: 512 HENYGLGIYRGIEKIEVEGIERDYIKIEYS---GTDTLYILATQLDVLQKYAGADARKPK 568

Query: 746 I-SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           +  +++Q+   +K K K  ++ +       A +L
Sbjct: 569 LNKLNSQEWGKTKSKVKTAVEQV-------AKDL 595



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI    ++    +   P++        E V + IN    +G 
Sbjct: 778 VLTLSATPIPRTLHMSLVGIRDMSVLEEPPVDRMPIQTFVTEQNDEMVREAINRELARGG 837

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       R  ++    + +   +  V Y H ++       I+ D   G  DVLV   +
Sbjct: 838 QVYYVYNRVRNIDEAASRIQQLVPDANVAYAHGQMDEKTLEAIMYDFINGDIDVLVSTTI 897

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDI     + I DA+  G  +    L Q  GR  R+  +          K ++   
Sbjct: 898 IETGLDISNVNTMIIEDAENLGLSQ----LYQLRGRVGRSNRTAYAFLLYRRGKMLKEVA 953

Query: 702 D 702
           +
Sbjct: 954 E 954


>gi|332638696|ref|ZP_08417559.1| transcription-repair coupling factor [Weissella cibaria KACC 11862]
          Length = 1172

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 110/663 (16%), Positives = 222/663 (33%), Gaps = 88/663 (13%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q      L  G+    +  L+ G++G+ +T  +A + E +QRP +++  ++  A QL  +
Sbjct: 9   QDNDFQTLAAGLKKGGR-HLMTGISGTARTVYLAALHENIQRPMVIVGDSQFHADQLAED 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                    V  F             P  +T   + +  +      R  A   LL     
Sbjct: 68  LAAMVGDEHVAVF-------------PTEETLSAEIAVTSLDTRLARVQALHLLLTDPQA 114

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           +VV+ V+ +   +  V +++   +++      E  EL ++L +  Y+R       G F V
Sbjct: 115 VVVTGVAGVQRYLPPVATFAAAALEIDFDHEYELAELQATLYQMGYQRNGSVEQPGEFAV 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++I+P    D   R+  F   ++ +  F   T + + N+E + I   +  V     
Sbjct: 175 RGSIVDIYPLDA-DYPVRLDFFDTALDSLRSFDAETQRSLENLEHVTILPATDLVIDAAD 233

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           L  A   ++  +     +L+   +      L + +   L ++        +  Y   L  
Sbjct: 234 LQAATTRLEVAMTETRDKLDGAAKRH----LTEALDPLLTVMAQGDLLPEVRQYLHLLYP 289

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
                   +L +Y+P D +   D+    +     M   + +           LP+   + 
Sbjct: 290 DA-----VSLLDYLPADGIAVFDDYPRALENAGQMALDNNNWWTDRLADNLVLPTA--DF 342

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQV 568
                +       T +V  +P    + Q         +R T L +    +R A+    Q+
Sbjct: 343 GWELSDLARDVRQTSLV-FSPLQRGIGQ---------LRQTSLTNL--TVRPAQQFFGQM 390

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             + +EI    +Q   IL    T    E L + L +  ++V  +  +     R +     
Sbjct: 391 PLLKNEIARWQKQNQTILFLTNTPDRREKLVQTLNDFGVKVNDVAPDALAPGRTQ----- 445

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSK 685
                   V    L  G ++P   LV + + +    +R +    QT+    R       K
Sbjct: 446 --------VTTLPLSAGFELPAQNLVVLTERELFQQVRKRAPKRQTLSNAERIKSYNELK 497

Query: 686 VILYADTITK--SIQLAIDETTRRREKQ----LEHNKKHNI-NPQS----VKEKIMEVID 734
              Y   I     +   +     R  KQ    + + +   I  P +    V++ +     
Sbjct: 498 PGDYVVHINHGVGVYEGMQTIENRGVKQDYITIAYQQDAKIFIPVTQLDLVQKYVGAAEK 557

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL--------------NF 780
              +     T       +++   +     L  L  +       L              +F
Sbjct: 558 APKINKLGGTEWQKAKAKVAKKVEDIADELLQLYAE-----RELKQGFAFPQDDDVIRDF 612

Query: 781 EEA 783
           E+A
Sbjct: 613 EDA 615



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 10/186 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++              I     +G 
Sbjct: 770 VLTLTATPIPRTLNMAMVGVRDLSVIETPPANRYPIQTYVMEQNGRVTASAIEREMSRGG 829

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +             +   +       R  Y+H ++   +   I+ D    ++DVLV   +
Sbjct: 830 QTYYLHNRVEDIAQVAGMIESLVPEARVGYIHGQMTEAQMEGILVDFINREYDVLVTTTI 889

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G  +    L Q  GR  R+ N     +    T+S+    
Sbjct: 890 IETGVDIPNANTLFVENADHMGLAQ----LYQLRGRVGRSNNIAYAYFTYPGTRSLN--- 942

Query: 702 DETTRR 707
           +E+ +R
Sbjct: 943 EESEKR 948


>gi|169825685|ref|YP_001695843.1| transcription-repair coupling factor [Lysinibacillus sphaericus
           C3-41]
 gi|168990173|gb|ACA37713.1| Transcription-repair coupling factor [Lysinibacillus sphaericus
           C3-41]
          Length = 1169

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 91/521 (17%), Positives = 183/521 (35%), Gaps = 51/521 (9%)

Query: 157 IAQLLKGIHSREKV-QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           I   L+ I S +   QL+ G+TGS +   +  + E +++P  +++PN + A ++  E   
Sbjct: 14  ITSFLQDIQSGQTASQLITGLTGSARPVMVDALFEYVKKPIYIVSPNLLQAQRMVDELAG 73

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
                 V Y+             P  +      S  + ++   R +    L      + V
Sbjct: 74  LLGEENVHYY-------------PADEFIAADLSVASPELRAERIATLDCLARGEKAVYV 120

Query: 276 SSVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
             V+ +  I    E +    +Q  +GD +E    L +LV+  Y R  +    G F + G 
Sbjct: 121 IPVAGLRKIMQPKEHWLHYFLQTTVGDEIEVDAWLQTLVEMGYVRNSMVTTPGEFALRGG 180

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++I+P +L     R+ +F  +++ I  F     + I  ++ I+I   S  +  +    T
Sbjct: 181 ILDIYPPYLAS-PIRIELFDTEVDSIRTFSADDQRSINKLQKIRILPASEVILTKSERQT 239

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
             + +++ L   L +++   R    + L Q I YD+E+L+       +  Y   L  ++ 
Sbjct: 240 LAERLEKALGASLKKVK---RQETKELLYQHIQYDIELLQQGNLPDYVNKYGSLLYDKSA 296

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
                 L +Y  +D ++  DE       +    R +     +L E G  +        L+
Sbjct: 297 Y-----LGDYFAQDGIVLFDELGRIQEVMDAWEREEEEWFLSLIEEGKMVHDVKPAFTLK 351

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            E    L    +  S                  I            ++    Q+  +  E
Sbjct: 352 -EIVAMLSQQKLSFSL----------FSRTFSGITFNKTTNFSCKPMQQFHGQMALLQSE 400

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I         +L+    K   + + + L E +I                I      G + 
Sbjct: 401 IERWLLGKFTVLIVARDKERVKRVQQMLEEYDIHAA-------------IGEPTEPGIY- 446

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             +    L  G ++P   +  + + +       K +  Q +
Sbjct: 447 --IVDGALSSGFELPLQRMAIVTEDELFKQQAKKKARTQKM 485



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 14/189 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 771 VLTLTATPIPRTLHMSMVGVRDLSVIETPPANRFPVQTYVMEHSGALVREAIEREMARGG 830

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV-----RYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++          ED+   + E  + V      + H ++   E   +I     G +DVLV 
Sbjct: 831 QVFYLY---NRVEDMARKVEEIQVLVPEARIGHAHGKMSETELESVILSFLEGDYDVLVT 887

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DIP    + + DAD+ G  +    L   +GR+ R   +  +   D +   + 
Sbjct: 888 TTIIETGVDIPNVNTLIVHDADRMGLAQ-LYQLRGRVGRSNRVAYAYFMYQRDKVLTDVA 946

Query: 699 L----AIDE 703
                AI E
Sbjct: 947 EQRLQAIKE 955


>gi|257424615|ref|ZP_05601043.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257427281|ref|ZP_05603682.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257429918|ref|ZP_05606304.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257435524|ref|ZP_05611574.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M876]
 gi|282903089|ref|ZP_06310981.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus C160]
 gi|282904878|ref|ZP_06312738.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282907825|ref|ZP_06315663.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910141|ref|ZP_06317947.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282913331|ref|ZP_06321122.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918284|ref|ZP_06326024.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus C427]
 gi|282923035|ref|ZP_06330721.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus C101]
 gi|283957293|ref|ZP_06374751.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293500380|ref|ZP_06666232.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509318|ref|ZP_06668034.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M809]
 gi|293515907|ref|ZP_06670597.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M1015]
 gi|297591586|ref|ZP_06950223.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MN8]
 gi|257272642|gb|EEV04762.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275932|gb|EEV07400.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257279434|gb|EEV10029.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257285161|gb|EEV15278.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M876]
 gi|282314554|gb|EFB44941.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317850|gb|EFB48219.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus C427]
 gi|282322802|gb|EFB53122.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325989|gb|EFB56295.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282328301|gb|EFB58576.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331995|gb|EFB61504.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282596515|gb|EFC01475.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus C160]
 gi|283791217|gb|EFC30027.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290921315|gb|EFD98373.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096340|gb|EFE26600.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467863|gb|EFF10373.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus M809]
 gi|297575455|gb|EFH94172.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312436407|gb|ADQ75478.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus TCH60]
          Length = 1168

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 92/502 (18%), Positives = 195/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++            FV
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQ---------FV 72

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
              + Y+     P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 73  DAEELYK----YPVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   N+E + I   S Y+     ++   + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVISHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIDYFQKDAIIAVDEFNRIKETEESLTVESDSFISNVIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +          
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHP----ANK 938

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 939 VLTETAEDRLQAIKEFTELG 958



 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|282875433|ref|ZP_06284305.1| transcription-repair coupling factor [Staphylococcus epidermidis
           SK135]
 gi|281295790|gb|EFA88312.1| transcription-repair coupling factor [Staphylococcus epidermidis
           SK135]
          Length = 1169

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 86/516 (16%), Positives = 192/516 (37%), Gaps = 64/516 (12%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            ++  L+ G++ S K   +A+      +  +++  N   A ++ ++   +   + V  + 
Sbjct: 23  GQENILVTGLSPSAKATIIAEKYLKDHKQMLLVTNNLYQADKIETDILQYVDDSEVYKY- 81

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++     + 
Sbjct: 82  ------------PVQDIMTEEFSTQSPQLMSERVRTLTALAQGEKGLFIVPLNGFKKWLT 129

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            V+ +    + LK+G  ++    L+ LV   Y+R+ +    G F + G  I+I+P     
Sbjct: 130 PVDLWKDHQMTLKVGQDIDVDAFLNKLVNMGYRRESVVSHIGKFSLRGGIIDIYPLIG-- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +++ I +F   T +   N+  ++I   S Y+     +      +K+  + 
Sbjct: 188 TPVRIELFDTEVDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNELKKAYEY 247

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              ++EK  R       E+ +L +   +D ++L              ++      E P T
Sbjct: 248 TRPKIEKSVRNDLKETYESFKLFESTFFDHQLLR---------RLVSFMY-----EKPST 293

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           L +Y  +++++ VDE +        +        + L E G           +++E ++ 
Sbjct: 294 LIDYFQKNAIIVVDEFNRIKETEETLTTEVEDFMSNLIESGNGFIGQG---FMKYESFDA 350

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           L     V   T           + ++ II+ +        ++    Q + +  E      
Sbjct: 351 LLEQHAVAYFTL----FTSSMQVPLQHIIKFSCKP-----VQQFYGQYDIMRSEFQRYVH 401

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q   +++ V T+   E +   L E +I  V  +H ++                  V+V  
Sbjct: 402 QDYTVVVLVETETKVERIQSMLNEMHIPTVSNIHEDIDG--------------GQVVVTE 447

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             L EG ++P   LV I   ++E F   +    +  
Sbjct: 448 GSLSEGFELPYMQLVVI--TERELFKTRQKKQRKRT 481



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 11/184 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +  
Sbjct: 770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDG 829

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 830 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINHEYDILVTT 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I +AD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 888 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPANKVLNE 943

Query: 700 AIDE 703
             +E
Sbjct: 944 TAEE 947


>gi|332685798|ref|YP_004455572.1| transcription-repair coupling factor [Melissococcus plutonius ATCC
           35311]
 gi|332369807|dbj|BAK20763.1| transcription-repair coupling factor [Melissococcus plutonius ATCC
           35311]
          Length = 1181

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 95/513 (18%), Positives = 190/513 (37%), Gaps = 61/513 (11%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL+ G+ GS KT  MA      ++  +V+ PN   A QL  + KN  P  +V  F     
Sbjct: 26  QLITGLAGSAKTLVMANGYIQQKKKMMVIVPNLYYANQLVEDLKNLIPTESVHLF----- 80

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES- 289
                   P  +    + +  + +    R +    L+ +   I+V  V+ +      ++ 
Sbjct: 81  --------PVDEVISAEMAFSSPEARAERVATLNFLITKKTGIIVVPVAGLRKYLPKKTT 132

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           +    +  +IG+ ++ + L   LV   Y+RQ +    G F   G  ++I+P + E    R
Sbjct: 133 WKNAQIHWRIGEELDLEALAQQLVLLGYERQSLVGKPGEFSFRGSIVDIYPLNTE-YPIR 191

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           + +F  +++ +  F   T + +  ++ + I   +  +  +  L T +K +K  L+ RL  
Sbjct: 192 MELFDVEVDSLRYFEVDTQRSVETIDEVTISPMTDLIFSKADLETGIKELKNILEKRLAI 251

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            ++   L + + L++     L   E     ++   Y+ +L          TL +Y P +S
Sbjct: 252 TKE---LADKEILQEYFGQLLSSWEQGIPTENAHYYTDFLYKEK-----TTLLDYFPNNS 303

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           LLFVD+    +     + R +   +                   + EE       T  V+
Sbjct: 304 LLFVDDYSRIMETEREILREEAEWQTM-----------------KIEELQIFSEQTFGVN 346

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVE----IRSAR---TQVEDVYDEINLAAQQG 582
                 ++            +  G +          R  +    Q+  +  E +   +Q 
Sbjct: 347 IHELLRKVNLS-TTFFSLFQKGMGNLRFQAIHNFQYRPMQQFFGQLPLLKTETDRWQKQK 405

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             ++L + T    + + E      I      S V T  ++   +        V +    L
Sbjct: 406 QTVILLIPTNDRIKKVEELFQGVGIS-----SAVTTWNQLLPEK--------VQIIEGDL 452

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + G ++P   LV I + +    +  K +  QT 
Sbjct: 453 QTGFELPSERLVVITEKEVFHTVTKKRTHRQTT 485



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 80/205 (39%), Gaps = 17/205 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++       +  + 
Sbjct: 760 ERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPIQTYIMENNLGAIR 819

Query: 573 DEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + I     +G +I          ++  E++   + E   RV Y H ++  ++    + D 
Sbjct: 820 EGIERELARGGQIFYLYNRVETIEKKVEEIKALVPEA--RVAYAHGQMTEVKLENTLFDF 877

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              ++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       
Sbjct: 878 IEQQYDILVTTTIIETGVDIPNVNTLFVENADYMGL----STLYQLRGRVGRSNRVAYAY 933

Query: 689 YADTITKSIQLAIDETTRRREKQLE 713
           +        Q  ++E + +R + ++
Sbjct: 934 FMYEQ----QKILNEVSEKRLEAIK 954


>gi|251809809|ref|ZP_04824282.1| transcription-repair coupling factor [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251806677|gb|EES59334.1| transcription-repair coupling factor [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 1166

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 86/516 (16%), Positives = 191/516 (37%), Gaps = 64/516 (12%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            ++  L+ G++ S K   +A+      +  +++  N   A ++ ++   +   + V  + 
Sbjct: 20  GQENILVTGLSPSAKATIIAEKYLKDHKQMLLVTNNLYQADKIETDILQYVDDSEVYKY- 78

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++     + 
Sbjct: 79  ------------PVQDIMTEEFSTQSPQLMSERVRTLTALAQGEKGLFIVPLNGFKKWLT 126

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            V+ +    + LK+G  ++    L+ LV   Y+R+ +    G F + G  I+I+P     
Sbjct: 127 PVDLWKDHQMTLKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIG-- 184

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +++ I +F   T +   N+  ++I   S Y+     +       K+  + 
Sbjct: 185 TPVRIELFDTEVDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNEFKKAYEY 244

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              ++EK  R       E+ +L +   +D ++L              ++      E P T
Sbjct: 245 TRPKIEKSVRNDLKETYESFKLFESTFFDHQLLR---------RLVSFMY-----EKPST 290

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           L +Y  +++++ VDE +        +        + L E G           +++E ++ 
Sbjct: 291 LIDYFQKNAIIVVDEFNRIKETEETLTTEVEDFMSNLIESGNGFIGQG---FMKYESFDA 347

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           L     V   T           + ++ II+ +        ++    Q + +  E      
Sbjct: 348 LLEQHAVAYFTL----FTSSMQVPLQHIIKFSCKP-----VQQFYGQYDIMRSEFQRYVH 398

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q   +++ V T+   E +   L E +I  V  +H ++                  V+V  
Sbjct: 399 QDYTVVVLVETETKVERIQSMLNEMHIPTVSNIHEDIDG--------------GQVVVTE 444

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             L EG ++P   LV I   ++E F   +    +  
Sbjct: 445 GSLSEGFELPYMQLVVI--TERELFKTRQKKQRKRT 478



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 11/184 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +  
Sbjct: 767 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDG 826

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 827 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINHEYDILVTT 884

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I +AD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 885 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPANKVLNE 940

Query: 700 AIDE 703
             +E
Sbjct: 941 TAEE 944


>gi|257432620|ref|ZP_05608982.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257282485|gb|EEV12618.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
           aureus E1410]
          Length = 1168

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 92/502 (18%), Positives = 195/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++            FV
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQ---------FV 72

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
              + Y+     P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 73  DAEELYK----YPVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   N+E + I   S Y+     ++   + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVISHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIDYFQKDAIIAVDEFNRIKETEESLTVESDSFISNVIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +     K    
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPENK---- 938

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 939 VLTETAEDRLQAIKEFTELG 958



 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|282915821|ref|ZP_06323589.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus D139]
 gi|282320312|gb|EFB50654.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus D139]
          Length = 1168

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 90/502 (17%), Positives = 192/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++   F     +  + 
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQFIDAEELYKY- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 81  ------------PVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   N+E + I   S Y+     +    + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIRHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIDYFQKDAIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +          
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHP----ANK 938

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 939 VLTETAEDRLQAIKEFTELG 958



 Score = 38.5 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|298693833|gb|ADI97055.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 1168

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 91/502 (18%), Positives = 194/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++            FV
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQ---------FV 72

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
              + Y+     P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 73  DAEELYK----YPVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   N++ + I   S Y+     +    + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNIKEVDITTASDYIITEEVIRHLKEELKSAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIDYFQKDAIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQN---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +          
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHP----ANK 938

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 939 VLTETAEDRLQAIKEFTELG 958



 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|82750210|ref|YP_415951.1| transcription-repair coupling factor [Staphylococcus aureus RF122]
 gi|123768536|sp|Q2YVY2|MFD_STAAB RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|82655741|emb|CAI80140.1| transcription-repair coupling factor [Staphylococcus aureus RF122]
          Length = 1168

 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 91/502 (18%), Positives = 193/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++   F     +  + 
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQFIDAEELYKY- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 81  ------------PVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           SVE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 SVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   N+E + I   S Y+     +    + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIRHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIDYFQKDAIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +          
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHP----ANK 938

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 939 VLTETAEDRLQAIKEFTELG 958



 Score = 38.9 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|168335026|ref|ZP_02693140.1| transcription-repair coupling factor [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 1175

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 96/510 (18%), Positives = 200/510 (39%), Gaps = 43/510 (8%)

Query: 157 IAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           I  + K I+   R K  ++ G+  + K   +  + + +     V+A ++  A  +  +  
Sbjct: 15  IEGMNKFINEFNRNKTGIVGGIIEAAKGHLIYTLADFLDTCPFVIASSEEEAEVVKEDLA 74

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
             F    V Y+             P  D         + +I + R  A  ++++ N+ I+
Sbjct: 75  FLFGSENVIYY-------------PSRDILFYNADVHSNEIVKQRIEALDAIIKNNEAII 121

Query: 275 VSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+++  +   +   + + +  + +KIGD+V+ + +   L++  Y+R     + G F + G
Sbjct: 122 VTTIDALLNPLSPKDEFIRAQIVIKIGDTVDLQSMSYQLIENGYERVGRVEVVGQFAIRG 181

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++IF S   +   R+ ++  +I+ I  F P+T + I N+E   IY N   + PR  L 
Sbjct: 182 GIMDIF-SPANNTPIRMELWDTEIDSIRRFSPITQRTIDNIERAYIYPNQEIIIPREKLL 240

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A+  I++ELK  +  L + G    A R+++    D+E +    + ++   Y+ +     
Sbjct: 241 KAIPIIEKELKATIGVLRESGAKSAANRIKENTNEDIESIVNGLNIETQVLYAPFCDM-- 298

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
                 +LF+Y+     +F+ +      ++  ++        +  EYG  LPS +     
Sbjct: 299 ---ETASLFDYLEYKKTIFITDIKKCKDKLLRVFLEYEESVKSRLEYGHMLPSMVK-FIF 354

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
             EE          +   P          +   + I    L     EI S    ++    
Sbjct: 355 NREEIIAKVFEKNYIGFMP----FLASDDMATTKNILEIRLN----EINSNYKGLKIFEQ 406

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++     +G   +    TK  A  + E L E+ I               ++  D++ G+ 
Sbjct: 407 DLKQYKAEGKATVFLAGTKSKAAHVAEILEEQKIYTAL----------GDLTYDIQKGQ- 455

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEG 663
            +L+    L  G    +   V + D +  G
Sbjct: 456 -ILIASGSLSHGFIYEDLEFVILSDRELFG 484



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 70/179 (39%), Gaps = 12/179 (6%)

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAAQQG 582
           ++ATP    L+     I +  +    + + P E R+ +T V     + + D IN    + 
Sbjct: 782 LTATPIPRTLQMSLIGIRDMSV----IEEAPSERRAVQTYVLEESDDFIKDAINREINRE 837

Query: 583 LRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +   +    L       +V   H ++   E   I+      + +VLV   
Sbjct: 838 GQVYFLSXRVQNIVEKAAQLSNMVPXAKVALAHGQMSVRELEAIMERFENKEINVLVCTT 897

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  GLDI     + I+DADK G L     L   +GR+ +   + ++   D I   +  
Sbjct: 898 IIETGLDIANANTIIIVDADKMG-LSQLYQLRGRVGRSDKQAYAYLLYKRDXILSEVAE 955


>gi|283469795|emb|CAQ49006.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 1168

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 90/502 (17%), Positives = 193/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++   F     +  + 
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKNAQSNQQLLLITNNLYQADKLETDLLQFIDAEELYKY- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 81  ------------PVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   N+E + I   S Y+     ++   + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVISHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIDYFQKDAIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +          
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHP----ANK 938

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 939 VLTETAEDRLQAIKEFTELG 958



 Score = 38.9 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|308179637|ref|YP_003923765.1| transcription-repair coupling factor [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|308045128|gb|ADN97671.1| transcription-repair coupling factor [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 1175

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 92/554 (16%), Positives = 196/554 (35%), Gaps = 58/554 (10%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q      +L GI  R + QL+ G+ GS +T  ++ +   +    +++  N   A+QL  +
Sbjct: 9   QTPDFQTILAGISPRSR-QLITGLNGSARTVYLSALFHQLTHSLLIVTDNGFHASQLVDD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F             P  +    + ++ + +    R  A  +LL  +  
Sbjct: 68  LTSLLDEDQVFLF-------------PAEEMIATEVATSSPESRAQRVQALNALLRDSPA 114

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           +VV+SV+     +  V  +    + + +G  ++ ++L   L    Y ++ +    G F V
Sbjct: 115 VVVTSVAGARRFLPPVAQFQAATLPVAVGQDIDLEDLQRQLHDMGYVKEKLVARPGDFAV 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++I+P    D   R+  F  +++ +  F P T + + N++   I   + ++     
Sbjct: 175 RGSIVDIYPLDA-DYPLRLDFFDTEVDTLKYFDPETQRSVENLDEYTILPATDFILTSAM 233

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           L    +     LK  +    K+ +  E Q L   +   L  +E       +  Y  YL  
Sbjct: 234 LQAGAQR----LKTAIAAENKKLKPAERQTLADNLAQPLADMEKGIIGNDLLLYGDYLYD 289

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC---M 508
           R       ++F+Y+  D L+  +E    +     +   +         +   L +     
Sbjct: 290 RK-----TSIFDYVAADGLVIFEEYSRLLDSEQQLLTQEADWVTDQLAHHRVLATASYGN 344

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           D R L  ++        ++     G   ++  Q   V    RP               Q+
Sbjct: 345 DIRDLLRDD---QHAQLLISLFQKGIGNVKLAQVTNVR--TRPMQEFF---------GQL 390

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             +  E++   +    ++L V        +++ L +  I              +    +L
Sbjct: 391 PALKTELDRWHKLKQTVVLMVSEAERLTKVSDTLDDFEIEAV-----------MTKATNL 439

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSK 685
           + G   ++     L+ G + P+  LV + + +    +  K    QT+    R     + K
Sbjct: 440 QPGAVQIV--QGSLQNGFEFPDGKLVIVTEQEMFKKVAKKCPRRQTLANAERLKSYTDLK 497

Query: 686 VILYADTITKSIQL 699
              Y   +   I  
Sbjct: 498 PGDYVVHVNHGIGK 511



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I    Q+  
Sbjct: 770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPIQTYVMEQNFGVIKEGIEREMQRNG 829

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   + +   +  V ++  ++   +   I+ D   G++DVLV   +
Sbjct: 830 QVFYLHNRVHDIDKVVAQIKDLVPDAAVAHIDGQMPESQLEGILYDFIRGEYDVLVTTTI 889

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+DIP    + + +AD+ G L     L   IGR++R
Sbjct: 890 IETGVDIPNVNTLFVENADRMG-LSQLYQLRGRIGRSSR 927


>gi|221142305|ref|ZP_03566798.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|304380521|ref|ZP_07363197.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|269940074|emb|CBI48450.1| putative transcription-repair coupling factor [Staphylococcus
           aureus subsp. aureus TW20]
 gi|302750394|gb|ADL64571.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340925|gb|EFM06849.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|329313222|gb|AEB87635.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 1168

 Score =  213 bits (543), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 92/502 (18%), Positives = 193/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++   F     +  + 
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQFIDAEELYKY- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 81  ------------PVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   NVE + I   S Y+     ++   + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNVEEVDITTASDYIITEEVISHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + EY  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIEYFQKDAIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++L      +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVLYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +          
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHP----ANK 938

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 939 VLTETAEDRLQAIKEFTELG 958



 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|253730971|ref|ZP_04865136.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253725283|gb|EES94012.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 1168

 Score =  213 bits (543), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 92/502 (18%), Positives = 193/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++   F     +  + 
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQFIDAEELYKY- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 81  ------------PVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   NVE + I   S Y+     ++   + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNVEEVDITTASDYIITEEVISHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + EY  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIEYFQKDAIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +          
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHP----ANK 938

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 939 VLTETAEDRLQAIKEFTELG 958



 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|87160796|ref|YP_493190.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194263|ref|YP_499055.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|161508743|ref|YP_001574402.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253735238|ref|ZP_04869403.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|258452816|ref|ZP_05700811.1| transcription-repair coupling factor [Staphylococcus aureus A5948]
 gi|262049988|ref|ZP_06022847.1| transcription-repair coupling factor [Staphylococcus aureus D30]
 gi|282925578|ref|ZP_06333231.1| transcription-repair coupling factor [Staphylococcus aureus A9765]
 gi|284023512|ref|ZP_06377910.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 132]
 gi|294850363|ref|ZP_06791096.1| transcription-repair coupling factor [Staphylococcus aureus A9754]
 gi|123098062|sp|Q2G0R8|MFD_STAA8 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|123722412|sp|Q2FJD8|MFD_STAA3 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|87126770|gb|ABD21284.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87201821|gb|ABD29631.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|160367552|gb|ABX28523.1| transcription-repair coupling factor helicase [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253726798|gb|EES95527.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257859502|gb|EEV82355.1| transcription-repair coupling factor [Staphylococcus aureus A5948]
 gi|259161923|gb|EEW46506.1| transcription-repair coupling factor [Staphylococcus aureus D30]
 gi|282592482|gb|EFB97494.1| transcription-repair coupling factor [Staphylococcus aureus A9765]
 gi|294822787|gb|EFG39223.1| transcription-repair coupling factor [Staphylococcus aureus A9754]
 gi|315196186|gb|EFU26542.1| transcription-repair coupling factor helicase [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320139410|gb|EFW31288.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144187|gb|EFW35955.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329729764|gb|EGG66161.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 1168

 Score =  213 bits (543), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 92/502 (18%), Positives = 193/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++   F     +  + 
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQFIDAEELYKY- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 81  ------------PVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   NVE + I   S Y+     ++   + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNVEEVDITTASDYIITEEVISHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + EY  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIEYFQKDAIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +          
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHP----ANK 938

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 939 VLTETAEDRLQAIKEFTELG 958



 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|258407227|ref|ZP_05680372.1| transcription-repair coupling factor [Staphylococcus aureus A9763]
 gi|257841185|gb|EEV65634.1| transcription-repair coupling factor [Staphylococcus aureus A9763]
          Length = 1168

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 91/502 (18%), Positives = 192/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++   F     +  + 
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQFIDAEELYKY- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 81  ------------PVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   N+E + I   S Y+     +    + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIRHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + EY  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIEYFQKDAIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 66/183 (36%), Gaps = 11/183 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQVLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPANKVLTE 942

Query: 700 AID 702
             +
Sbjct: 943 NAE 945



 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|148266962|ref|YP_001245905.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393008|ref|YP_001315683.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257794256|ref|ZP_05643235.1| transcription-repair coupling factor [Staphylococcus aureus A9781]
 gi|258420806|ref|ZP_05683742.1| transcription-repair coupling factor [Staphylococcus aureus A9719]
 gi|258448018|ref|ZP_05696148.1| transcription-repair coupling factor [Staphylococcus aureus A6224]
 gi|258453836|ref|ZP_05701809.1| transcription-repair coupling factor [Staphylococcus aureus A5937]
 gi|295407393|ref|ZP_06817190.1| transcription-repair coupling factor [Staphylococcus aureus A8819]
 gi|297246473|ref|ZP_06930313.1| transcription-repair coupling factor [Staphylococcus aureus A8796]
 gi|147740031|gb|ABQ48329.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149945460|gb|ABR51396.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257788228|gb|EEV26568.1| transcription-repair coupling factor [Staphylococcus aureus A9781]
 gi|257843198|gb|EEV67611.1| transcription-repair coupling factor [Staphylococcus aureus A9719]
 gi|257858708|gb|EEV81581.1| transcription-repair coupling factor [Staphylococcus aureus A6224]
 gi|257864007|gb|EEV86762.1| transcription-repair coupling factor [Staphylococcus aureus A5937]
 gi|285816202|gb|ADC36689.1| Transcription-repair coupling factor [Staphylococcus aureus
           04-02981]
 gi|294967750|gb|EFG43782.1| transcription-repair coupling factor [Staphylococcus aureus A8819]
 gi|297176660|gb|EFH35922.1| transcription-repair coupling factor [Staphylococcus aureus A8796]
 gi|312828998|emb|CBX33840.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315128631|gb|EFT84634.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329725040|gb|EGG61535.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 1168

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 91/502 (18%), Positives = 192/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++   F     +  + 
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQFIDAEELYKY- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 81  ------------PVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   N+E + I   S Y+     +    + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIRHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + EY  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIEYFQKDAIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 66/183 (36%), Gaps = 11/183 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPANKVLTE 942

Query: 700 AID 702
             +
Sbjct: 943 NAE 945



 Score = 38.9 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|258446110|ref|ZP_05694271.1| transcription-repair coupling factor [Staphylococcus aureus A6300]
 gi|257855087|gb|EEV78029.1| transcription-repair coupling factor [Staphylococcus aureus A6300]
          Length = 1168

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 91/502 (18%), Positives = 192/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++   F     +  + 
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQFIDAEELYKY- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 81  ------------PVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   N+E + I   S Y+     +    + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIRHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + EY  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIEYFQKDAIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 66/183 (36%), Gaps = 11/183 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPANKVLTE 942

Query: 700 AID 702
             +
Sbjct: 943 NAE 945



 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 14/139 (10%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVE 223
           LA Q Y           VE
Sbjct: 679 LAQQHYETLIERMQDFPVE 697


>gi|258429620|ref|ZP_05688294.1| transcription-repair-coupling factor [Staphylococcus aureus A9299]
 gi|257849679|gb|EEV73646.1| transcription-repair-coupling factor [Staphylococcus aureus A9299]
          Length = 1168

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 91/502 (18%), Positives = 192/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++   F     +  + 
Sbjct: 22  GQANTLVTGLSPSAKVSMIAEKYAQSNQQLLLITNNLYQADKLETDLLQFIDAEELYKY- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 81  ------------PVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   N+E + I   S Y+     +    + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIRHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + EY  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIEYFQKDAIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +          
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHP----ANK 938

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 939 VLTETAEDRLQAIKEFTELG 958



 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|15923493|ref|NP_371027.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926180|ref|NP_373713.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus N315]
 gi|156978831|ref|YP_001441090.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253315228|ref|ZP_04838441.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255005296|ref|ZP_05143897.2| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|282895111|ref|ZP_06303331.1| transcription-repair coupling factor [Staphylococcus aureus A8117]
 gi|81832560|sp|Q7A7B2|MFD_STAAN RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|81855990|sp|Q99WA0|MFD_STAAM RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|13700393|dbj|BAB41691.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus N315]
 gi|14246271|dbj|BAB56665.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|156720966|dbj|BAF77383.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|282762529|gb|EFC02669.1| transcription-repair coupling factor [Staphylococcus aureus A8117]
          Length = 1168

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 91/502 (18%), Positives = 192/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++   F     +  + 
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQFIDAEELYKY- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 81  ------------PVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   N+E + I   S Y+     +    + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIRHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + EY  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIEYFQKDAIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +          
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHP----ANK 938

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 939 VLTETAEDRLQAIKEFTELG 958



 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|299820651|ref|ZP_07052540.1| transcription-repair coupling factor [Listeria grayi DSM 20601]
 gi|299817672|gb|EFI84907.1| transcription-repair coupling factor [Listeria grayi DSM 20601]
          Length = 1186

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 91/510 (17%), Positives = 199/510 (39%), Gaps = 47/510 (9%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I  ++K +  ++  QL+ G++GS +    + V  A +R  +++  N   A +LY 
Sbjct: 17  DQ-KDIQSIIKALDDKKAAQLVTGLSGSARALFASVVESAGKRTVLIVTHNLYHAQKLYD 75

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           + ++    + +  +             P  +    + S  + ++   R    + LL +  
Sbjct: 76  DLESLVDKDKLFLY-------------PADELISSELSVSSPELRGQRVEVLQFLLSQKP 122

Query: 272 CIVVSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            +VV  V+ +  I   +S + +  + +  G+ +E  +L   LV   Y    +    G F 
Sbjct: 123 GVVVVPVAGLRRILPPKSLWQKNNLTITQGEEIEPNQLRERLVTMGYTASQMVNTPGEFS 182

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V G  I+++P   E+   R+ +F  +I+ +  F   T +  + V T ++   +  +  + 
Sbjct: 183 VRGGIIDVYPI-TEEFPVRIELFDTEIDSLRYFDVETQRSQKKVNTFQLLPATEILIEQE 241

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                +  +++ L   L  L    +  + Q L + I  DLE+L +      +  Y  ++ 
Sbjct: 242 DFPAIVTRLEKHLAASLQALS---KDEDKQTLMENIEEDLELLRSGIKPDMLFKYIGFIY 298

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
                E   TL +Y  E+++L +DE          + + +   +    E    +     +
Sbjct: 299 -----EQQGTLLDYAAENTVLMLDEYARIQETEERLEKEEADWQVEQLEALKTVRDVALS 353

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             L+    N   P  I +S        ++   I   +I + T LV     ++    Q+  
Sbjct: 354 HQLKPLLDNHQLP-MIYLSL------FQKAGNI---RITKTTNLVYKQ--MQQFHGQMNI 401

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  E++   +    ++L       AE + + L +  +       E   L+R + +   + 
Sbjct: 402 LKTELDSWHKNNYAVILLAPNLERAEKMQQTLADYEM-------ESVILKREQDVP--KY 452

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDAD 660
           G    L+       G ++P    V + +A+
Sbjct: 453 GVVQFLI--GDFNNGFELPLAKFVVVSEAE 480



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 89/269 (33%), Gaps = 58/269 (21%)

Query: 565  RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
              QV  +Y+ +    Q+   I   V   R               V + H ++   E   +
Sbjct: 840  EGQVYYLYNRVESIVQKADEISALVPDAR---------------VAFAHGQMTETELESV 884

Query: 625  IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            I     G++DVLV   ++  G+DIP    + + DAD+ G  +    L Q  GR  R+   
Sbjct: 885  IVSFLEGEYDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQ----LYQLRGRVGRSNRI 940

Query: 685  KVILYADTITKSIQLAIDETTRRREKQLEHNK------------------------KHNI 720
                +     K ++   +E  +R +   E  +                        +H  
Sbjct: 941  AYAYFMYQKDKVLR---EEAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNILGAQQHGF 997

Query: 721  NPQS----VKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRK--QMHLA 774
                      + + E I+     +     +      L L     + ++   R+  +M+  
Sbjct: 998  IDSVGFDLYSQMLKEAIEARQPSEERKERVPTVEIDLELDAYIPEYYISDGRQKIEMYK- 1056

Query: 775  ADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
                 F  +   RDE++ L++    +  D
Sbjct: 1057 ----RF-RSITERDELEELQADLIDRFGD 1080


>gi|28377424|ref|NP_784316.1| transcription-repair coupling factor [Lactobacillus plantarum
           WCFS1]
 gi|28270256|emb|CAD63157.1| transcription-repair coupling factor [Lactobacillus plantarum
           WCFS1]
          Length = 1175

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 92/554 (16%), Positives = 196/554 (35%), Gaps = 58/554 (10%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q      +L GI  R + QL+ G+ GS +T  ++ +   +    +++  N   A+QL  +
Sbjct: 9   QTPDFQTILAGISPRSR-QLITGLNGSARTVYLSALFHQLTHSLLIVTDNGFHASQLVDD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F             P  +    + ++ + +    R  A  +LL  +  
Sbjct: 68  LTSLLDEDQVFLF-------------PAEEMIATEVATSSPESRAQRVQALNALLRDSPA 114

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           +VV+SV+     +  V  +    + + +G  ++ ++L   L    Y ++ +    G F V
Sbjct: 115 VVVTSVAGARRFLPPVAQFQAATLPVAVGQDIDLEDLQRQLHDMGYVKEKLVARPGDFAV 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++I+P    D   R+  F  +++ +  F P T + + N++   I   + ++     
Sbjct: 175 RGSIVDIYPLDA-DYPLRLDFFDTEVDTLKYFDPETQRSVENLDEYTILPATDFILTSAM 233

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           L    +     LK  +    K+ +  E Q L   +   L  +E       +  Y  YL  
Sbjct: 234 LQAGAQR----LKTAIAAENKKLKPAERQTLADNLAQPLADMEKGIIGNDLLLYGDYLYD 289

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC---M 508
           R       ++F+Y+  D L+  +E    +     +   +         +   L +     
Sbjct: 290 RK-----TSIFDYVAADGLVIFEEYSRLLDSEQQLLTQEADWVTDQLAHHRVLATASYGN 344

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           D R L  ++        ++     G   ++  Q   V    RP               Q+
Sbjct: 345 DIRDLLRDD---QHAQLLISLFQKGIGNVKLAQVTNVR--TRPMQEFF---------GQL 390

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             +  E++   +    ++L V        +++ L +  I              +    +L
Sbjct: 391 PALKTELDRWHKLKQTVVLMVSEAERLTKVSDTLDDFEIEAV-----------MTKATNL 439

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSK 685
           + G   ++     L+ G + P+  LV + + +    +  K    QT+    R     + K
Sbjct: 440 QPGAVQIV--QGSLQNGFEFPDGKLVIVTEQEMFKKVAKKRPRRQTLANAERLKSYTDLK 497

Query: 686 VILYADTITKSIQL 699
              Y   +   I  
Sbjct: 498 PGDYVVHVNHGIGK 511



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I    Q+  
Sbjct: 770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPIQTYVMEQNFGVIKEGIEREMQRNG 829

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   + +   +  V ++  ++   +   I+ D   G++DVLV   +
Sbjct: 830 QVFYLHNRVHDIDKVVAQIKDLVPDAAVAHIDGQMPESQLEGILYDFIRGEYDVLVTTTI 889

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+DIP    + + +AD+ G L     L   IGR++R
Sbjct: 890 IETGVDIPNVNTLFVENADRMG-LSQLYQLRGRIGRSSR 927


>gi|57650044|ref|YP_185435.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus COL]
 gi|151220678|ref|YP_001331500.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|81859647|sp|Q5HIH2|MFD_STAAC RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|57284230|gb|AAW36324.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus COL]
 gi|150373478|dbj|BAF66738.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus str. Newman]
          Length = 1168

 Score =  213 bits (541), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 92/502 (18%), Positives = 193/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++   F     +  + 
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQFIDAEELYKY- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 81  ------------PVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   NVE + I   S Y+     ++   + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNVEEVDITTASDYIITEEVISHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + EY  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIEYFQKDAIIAVDEFNRIKETEESLTVEPDSFISNIIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +          
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHP----ANK 938

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 939 VLTETAEDRLQAIKEFTELG 958



 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|119632706|gb|ABL84360.1| excinuclease ABC, B subunit [Streptococcus suis]
          Length = 167

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 89/169 (52%), Positives = 123/169 (72%), Gaps = 3/169 (1%)

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           DLRLG FDVL+GINLLREG+D+PE  LVAILDADKEGFLR++  LIQTIGRAARN    V
Sbjct: 1   DLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHV 60

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
           I+YAD +T+S++ A++ET RRR+ Q+ +N++H I PQ++K++I ++I    +  A T + 
Sbjct: 61  IMYADKVTESMRKAMEETARRRQIQMAYNEEHGIIPQTIKKEIRDLIS---VTKAVTQDK 117

Query: 747 SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                  +L+K + KA +K L  QM  AA+ L+FE AA+IRD +  LK+
Sbjct: 118 EEVVDFNALNKDERKAMIKKLEGQMQEAAEVLDFELAAQIRDMVIELKN 166


>gi|254555607|ref|YP_003062024.1| transcription-repair coupling factor [Lactobacillus plantarum JDM1]
 gi|254044534|gb|ACT61327.1| transcription-repair coupling factor [Lactobacillus plantarum JDM1]
          Length = 1175

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 91/554 (16%), Positives = 196/554 (35%), Gaps = 58/554 (10%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q      +L GI  R + QL+ G+ GS +T  ++ +   +    +++  N   A+QL  +
Sbjct: 9   QTPDFQTILAGISPRSR-QLITGLNGSARTVYLSALFHQLTHSLLIVTDNGFHASQLVDD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F             P  +    + ++ + +    R  A  +LL  +  
Sbjct: 68  LTSLLDEDQVFLF-------------PAEEMITTEVATSSPESRAQRVQALNALLRDSPA 114

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           +VV+SV+     +  V  +    + + +G  ++ ++L   L    Y ++ +    G F V
Sbjct: 115 VVVTSVAGARRFLPPVAQFQAATLPVAVGQDIDLEDLQRQLHDMGYVKEKLVARPGDFAV 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++I+P    D   R+  F  +++ +  F P T + + N++   I   + ++     
Sbjct: 175 RGSIVDIYPLDA-DYPLRLDFFDTEVDTLKYFDPETQRSVENLDEYTILPATDFILTSAM 233

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           L    + +K  +     +L    +  E Q L   +   L  +E       +  Y  YL  
Sbjct: 234 LQAGAQRLKTAIAAESKKL----KPAERQTLADNLAQPLADMEKGIIGNDLLLYGDYLYD 289

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC---M 508
           R       ++F+Y+  D L+  +E    +     +   +         +   L +     
Sbjct: 290 RK-----TSIFDYVAADGLVIFEEYSRLLDSEQQLLTQEADWVTDQLAHHRVLATASYGN 344

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           D R L  ++        ++     G   ++  Q   V    RP               Q+
Sbjct: 345 DIRDLLRDD---QHAQLLISLFQKGIGNVKLAQVTNVR--TRPMQEFF---------GQL 390

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             +  E++   +    ++L V        +++ L +  I              +    +L
Sbjct: 391 PALKTELDRWHKLKQTVVLMVSEAERLTKVSDTLDDFEIEAV-----------MTKATNL 439

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSK 685
           + G   ++     L+ G + P+  LV + + +    +  K    QT+    R     + K
Sbjct: 440 QPGAVQIV--QGSLQNGFEFPDGKLVIVTEQEMFKKVAKKRPRRQTLANAERLKSYTDLK 497

Query: 686 VILYADTITKSIQL 699
              Y   +   I  
Sbjct: 498 PGDYVVHVNHGIGK 511



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I    Q+  
Sbjct: 770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPIQTYVMEQNFGVIKEGIEREMQRNG 829

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   + +   +  V ++  ++   +   I+ D   G++DVLV   +
Sbjct: 830 QVFYLHNRVHDIDKVVAQIKDLVPDAAVAHIDGQMPESQLEGILYDFIRGEYDVLVTTTI 889

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+DIP    + + +AD+ G L     L   IGR++R
Sbjct: 890 IETGVDIPNVNTLFVENADRMG-LSQLYQLRGRIGRSSR 927


>gi|21282187|ref|NP_645275.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49485367|ref|YP_042588.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|297207394|ref|ZP_06923833.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300910353|ref|ZP_07127806.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|81827911|sp|Q6GBY5|MFD_STAAS RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|81847858|sp|Q8NXZ6|MFD_STAAW RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|21203623|dbj|BAB94323.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49243810|emb|CAG42235.1| putative transcription-repair coupling factor [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|296887957|gb|EFH26851.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300888342|gb|EFK83529.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 1168

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 92/502 (18%), Positives = 192/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++   F     +  + 
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQFIDAEELYKY- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 81  ------------PVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F   I+ I +F   T +   NVE + I   S Y+     ++   + +K   + 
Sbjct: 188 -PIRIELFDTKIDSIRDFDVETQRSKDNVEEVDITTASDYIITEEVISHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + EY  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIEYFQKDAIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +          
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHP----ANK 938

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 939 VLTETAEDRLQAIKEFTELG 958



 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|319399660|gb|EFV87914.1| transcription-repair coupling factor [Staphylococcus epidermidis
           FRI909]
          Length = 1166

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 85/516 (16%), Positives = 191/516 (37%), Gaps = 64/516 (12%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            ++  L+ G++ S K   +A+      +  +++  N   A ++ ++   +   + V  + 
Sbjct: 20  GQENILVTGLSPSAKATIIAEKYLKDHKQMLLVTNNLYQADKIETDILQYVDDSEVYKY- 78

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++     + 
Sbjct: 79  ------------PVQDIMTEEFSTQSPQLMSERVRTLTALAQGEKGLFIVPLNGFKKWLT 126

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            V+ +    + +K+G  ++    L+ LV   Y+R+ +    G F + G  I+I+P     
Sbjct: 127 PVDLWKDHQMTIKVGQDIDVDTFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIG-- 184

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +++ I +F   T +   N+  ++I   S Y+     +      +K+  + 
Sbjct: 185 TPVRIELFDTEVDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNELKKAYEY 244

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              ++EK  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 245 TRPKIEKSVRNDLKETYESFKLFESTFFDHQLLRRLVAFMY--------------EKPST 290

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           L +Y  +++++ VDE +        +        + L E G           +++E ++ 
Sbjct: 291 LIDYFQKNAIVVVDEFNRIKETEETLTTEVEDFMSNLIESGNGFIGQG---FMKYESFDA 347

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           L     V   T           + ++ II+ +        ++    Q + +  E      
Sbjct: 348 LLEKHAVAYFTL----FTSSMQVPLQHIIKFSCKP-----VQQFYGQYDIMRSEFQRYVH 398

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q   +++ V T+   E +   L E +I  V  +H ++                  V+V  
Sbjct: 399 QDYTVVVLVETETKVERIQSMLNEMHIPTVSNIHEDIDG--------------GQVVVTE 444

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             L EG ++P   LV I   ++E F   +    +  
Sbjct: 445 GSLSEGFELPYMQLVVI--TERELFKTRQKKQRKRT 478



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 11/184 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +  
Sbjct: 767 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDG 826

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 827 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINHEYDILVTT 884

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I +AD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 885 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPANKVLNE 940

Query: 700 AIDE 703
             +E
Sbjct: 941 TAEE 944


>gi|319891456|ref|YP_004148331.1| Transcription-repair coupling factor [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161152|gb|ADV04695.1| Transcription-repair coupling factor [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323465374|gb|ADX77527.1| transcription-repair coupling factor [Staphylococcus
           pseudintermedius ED99]
          Length = 1170

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 83/495 (16%), Positives = 188/495 (37%), Gaps = 53/495 (10%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G+T + K   +A++ ++  R  +++  N   A ++ ++   F P + V  + 
Sbjct: 23  GQSNVLVTGLTPAAKASIIAELYQSDHRQVVLVTNNLYQADKIEADLLQFVPDDEVYKY- 81

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
                       P  D   E+ S+ + ++   R     +L      + +  ++ +  + +
Sbjct: 82  ------------PVQDMMTEEFSTQSPELMSERVRTLTALANDRRGLFIVPLNGLKKLLT 129

Query: 287 VES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            +  +    +  ++GD +E   LL  LV   Y+R+ +    G F V G  I+++P   E 
Sbjct: 130 PKEMWRDHQMTFEVGDDIEIDALLEKLVSMGYRRESVVSNIGEFSVRGGIIDVYPLLGE- 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +++ I +F   T +   N+++ +I     Y+         M  +K   + 
Sbjct: 189 -PIRIELFDTEVDSIRQFDVETQRSSENIDSAEITTAHDYIMTEAVRQQMMTALKSAYET 247

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLET--TGSCQSIENYSRYLTGRNPGEPPPTLFE 463
              +++K  R    Q L++  TYD   +        Q +     ++      E P T+ +
Sbjct: 248 TRPKIDKSVR----QDLKE--TYDSFQMVEDTHFDPQILRRLVAFMY-----EKPTTILD 296

Query: 464 YIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP 523
           Y+ +++++ VDE +        +          L E G         R +  E ++ +  
Sbjct: 297 YLKDNAIILVDEYNRVRETEESLSVETEDFLQNLIESGKGFIGQ---RFMDDEAFDRMLR 353

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
              +   T           + ++ +I+ +        ++    Q + +  E     +Q  
Sbjct: 354 QFKITFFTL----FTASMQMKLDDMIKFSCKP-----VQQFYGQYDIMTSEFQRYMRQED 404

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++ V T    E +   L E +I    +  +V T+                 +    L 
Sbjct: 405 RVVVMVETATKKERIQAMLSEMHIPT-LLEPDVDTMA-----------AGHAAIIEGSLS 452

Query: 644 EGLDIPECGLVAILD 658
           EG ++P   LV + +
Sbjct: 453 EGFELPYMSLVVVTE 467



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 67/184 (36%), Gaps = 11/184 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II        PV+          + + +     +  
Sbjct: 772 VLTLTATPIPRTLHMSMLGVRDLSIIETPPENRFPVQTYVLEQNTNFIKEALERELSRDG 831

Query: 584 RILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++              E L   + + +I V   H ++   +  E + D   G++D+LV  
Sbjct: 832 QVFYLYNRVSSIYEKREQLQMLMPDASIGVA--HGQLPERDLEETMLDFINGEYDILVTT 889

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +     + +  
Sbjct: 890 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHATNRVLNE 945

Query: 700 AIDE 703
             +E
Sbjct: 946 VAEE 949


>gi|315301106|ref|ZP_07872400.1| transcription-repair-coupling factor [Listeria ivanovii FSL F6-596]
 gi|313630527|gb|EFR98366.1| transcription-repair-coupling factor [Listeria ivanovii FSL F6-596]
          Length = 470

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 81/501 (16%), Positives = 189/501 (37%), Gaps = 45/501 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNALDGKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   L+     IV+ 
Sbjct: 74  MDSDRLFLY-------------PADELISSELSISSPELRGQRVEALDFLISGKPGIVIV 120

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    S  +     +  G+ ++ + L   L+   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIIEGEEIDPEVLRQKLLTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTSRVEEFRLLPATEIILDQNYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +++++   L EL+      E +          E LE   S    + + +Y+    P 
Sbjct: 240 VKRLEKKMMFTLNELK------EKEDKXXXXENLEEDLEMLRSGVKPDMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +LF+Y P+++ + +DE    +     + + +   +        R+ +  D +    
Sbjct: 294 --PASLFDYFPKNTAILLDEFARILETEENLEKEEAEWQTETLG---RMETVRDVQVS-- 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +  L       + +P  +     + +   ++ + T +V     ++    Q+  +  E+
Sbjct: 347 HSFKKLLDE----NHSPKIYLSLFQKQMASMRVSKTTNIVYKQ--MQQFHGQMNVLKTEL 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    +++   +   AE + + L + ++    +  E             + G    
Sbjct: 401 ESWHKNNYAVVILAPSIERAEKMQQTLADYDMESTILKKESDIP---------KYGLVQF 451

Query: 636 LVGINLLREGLDIPECGLVAI 656
           +VG    + G ++P   +  I
Sbjct: 452 VVGT--FQNGFELPLAKVAII 470


>gi|70727507|ref|YP_254423.1| transcription-repair coupling factor [Staphylococcus haemolyticus
           JCSC1435]
 gi|123748600|sp|Q4L3G0|MFD_STAHJ RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|68448233|dbj|BAE05817.1| transcription-repair coupling factor [Staphylococcus haemolyticus
           JCSC1435]
          Length = 1169

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 88/504 (17%), Positives = 187/504 (37%), Gaps = 72/504 (14%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
             +  L+ G++ S K   +A+     Q+  +++  N   A +L ++   +  H+ V  + 
Sbjct: 23  GHQNILVTGLSPSAKATIIAEKYLKDQKQMLLITNNLYQADKLETDILQYIDHSEVYKY- 81

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L      + +  ++ +   + 
Sbjct: 82  ------------PVQDIMTEEFSTQSPQLMSERVRTLTALAHNKKGLFIVPLNGLKKWLT 129

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
             E +    + L++G+ ++  E L+ LV   Y+R+ +    G F + G  I+I+P   + 
Sbjct: 130 PFELWKDHQITLRVGEDIDVDEFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIGQ- 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +++ I +F   T +   N+E + I   S YV     +      +K   + 
Sbjct: 189 -PVRIELFDTEVDSIRDFDVETQRSNDNIEEVSITTASDYVITDDVIQHLQSELKTAYEA 247

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 248 TRPKIDKSVRNDLKETYESFKLFETTFFDHQLLRRLVAFMY--------------EQPST 293

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           L +Y  +D+++  DE +        +          L E G           ++++ +  
Sbjct: 294 LIDYFAKDAIIVADEYNRIKETEKTLTTEVDDFIQNLIESGNGFIGQS---FMQYDGFES 350

Query: 521 LRP------TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           L         T+  S  P          + ++ II+ +        ++    Q + +  E
Sbjct: 351 LLKDYPVTYFTLFTSTMP----------VQLQHIIKFSCKP-----VQQFYGQYDIMRSE 395

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                     I++ V T+   E +   L E +I                +  D++ G+  
Sbjct: 396 FQRYVHNDYHIVVLVETETKVERIQSMLNEMHIPTV-----------TNVQNDIKSGQ-- 442

Query: 635 VLVGINLLREGLDIPECGLVAILD 658
           V+V    L EG ++P   LV I +
Sbjct: 443 VVVTEGSLSEGFELPYMQLVVITE 466



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +  
Sbjct: 770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRDG 829

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +     G+FD+LV  
Sbjct: 830 QVFYLYNRVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINGEFDILVTT 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I +AD+ G  +    L Q  GR  R+       +      S   
Sbjct: 888 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSRIGYAYFLH----SANK 939

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 940 VLTETAEERLQAIKEFTELG 959


>gi|269202123|ref|YP_003281392.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ED98]
 gi|296276156|ref|ZP_06858663.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus MR1]
 gi|262074413|gb|ACY10386.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
           aureus ED98]
          Length = 1168

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 91/502 (18%), Positives = 192/502 (38%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A +L ++   F     +  + 
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQFIDAEELYKY- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 81  ------------PVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F + G  I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   N+E + I   S Y+     +    + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIRHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------EIPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + EY  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIEYFQKDAIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +          
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHP----ANK 938

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 939 VLTETAEDRLQAIKEFTELG 958



 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|242241588|ref|ZP_04796033.1| transcription-repair coupling factor [Staphylococcus epidermidis
           W23144]
 gi|242234969|gb|EES37280.1| transcription-repair coupling factor [Staphylococcus epidermidis
           W23144]
          Length = 1166

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 84/516 (16%), Positives = 191/516 (37%), Gaps = 64/516 (12%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            ++  L+ G++ S K   +A+      +  +++  N   A ++ ++   +   + V  + 
Sbjct: 20  GQENILVTGLSPSAKATIIAEKYLKDHKQMLLVTNNLYQADKIETDILQYVDDSEVYKY- 78

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++     + 
Sbjct: 79  ------------PVQDIMTEEFSTQSPQLMSERVRTLTALAQGEKGLFIVPLNGFKKWLT 126

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            V+ +    + +K+G  ++    L+ LV   Y+R+ +    G F + G  I+I+P     
Sbjct: 127 PVDLWKDHQMTIKVGQDIDVDTFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIG-- 184

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +++ I +F   T +   N+  ++I   S Y+     +      +K+  + 
Sbjct: 185 TPVRIELFDTEVDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNELKKAYEY 244

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              ++EK  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 245 TRPKIEKSVRNDLKETYESFKLFESTFFDHQLLRRLVAFMY--------------EKPST 290

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           L +Y  +++++ VDE +        +        + L E G           +++E ++ 
Sbjct: 291 LIDYFQKNAIVVVDEFNRIKETEETLTTEVEDFMSNLIESGNGFIGQG---FMKYESFDA 347

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           L     V   T           + ++ II+ +        ++    Q + +  E      
Sbjct: 348 LLENHAVAYFTL----FTSSMQVPLQHIIKFSCKP-----VQQFYGQYDIMRSEFQRYVH 398

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q   +++ V T+   + +   L E +I  V  +H ++                  V+V  
Sbjct: 399 QDYTVVVLVETETKVDRIQSMLNEMHIPTVSNIHEDIDG--------------GQVVVTE 444

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             L EG ++P   LV I   ++E F   +    +  
Sbjct: 445 GSLSEGFELPYMQLVVI--TERELFKTRQKKQRKRT 478



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 11/184 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +  
Sbjct: 767 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDG 826

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 827 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINHEYDILVTT 884

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I +AD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 885 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPANKVLNE 940

Query: 700 AIDE 703
             +E
Sbjct: 941 TAEE 944


>gi|73663562|ref|YP_302343.1| transcription-repair coupling factor [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|123761497|sp|Q49V12|MFD_STAS1 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|72496077|dbj|BAE19398.1| transcription-repair coupling factor [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 1170

 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 89/498 (17%), Positives = 186/498 (37%), Gaps = 59/498 (11%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            ++  L+ G++G+ K   +A+     ++  +V+  N   A +L S+   F   + +  + 
Sbjct: 23  GKENVLVTGLSGAAKATIIAEKYLNSEQQLLVVTNNLYQADKLESDLLQFVEDSEIYKY- 81

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q    R     +L +    + +  ++ +   + 
Sbjct: 82  ------------PMQDIMTEEFSTQSPQFMSERVRTLTALAQEERGLFIVPLNGLKKWLT 129

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            V+ +    + L +GD ++  E L+ LV   Y+R+ +    G F + G  ++I+P     
Sbjct: 130 PVDMWKSHQLTLNVGDDIDIDEFLNKLVNMGYRRESVVSHIGEFSLRGGIVDIYPLIG-- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+  F  +++ I +F   + +   N+E + I   S Y+     L      +K+  + 
Sbjct: 188 KPVRIEFFDTEVDSIRDFDVESQRSEGNIEHVDITTASDYIITEDVLKHTKHKLKQAYED 247

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              ++EK  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 248 TRPKIEKSVRNELKETYESFQLFEAEMFDHQVLRRLVAFMY--------------EQPAT 293

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y  ED+++ VDE +      + +          L E G      +D   L++E +  
Sbjct: 294 IMDYFKEDAIIAVDEYNRIKETETTLVTEIDEFMQNLIESG---KGFIDQSFLQYEGFEN 350

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           L     V   T           + + +II+ +        ++    Q + +  E     Q
Sbjct: 351 LLKPFAVTYFTL----FTATMPVQLNEIIKFSCKP-----VQQFYGQYDIMRSEFQRFIQ 401

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
               I++   T+   E +   L E +I        + T  R       R      ++   
Sbjct: 402 NDYTIVVLAETETKKERIQSMLNEMHIPTF-----IDTPSR-------RNEGGSAIITEG 449

Query: 641 LLREGLDIPECGLVAILD 658
            L EG ++P   LV + +
Sbjct: 450 SLSEGFELPYMQLVVVTE 467



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +  
Sbjct: 771 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDG 830

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D++V  
Sbjct: 831 QVFYLYNKVQSIYEKREQLQMLMPDANIGVA--HGQMNERDLEETMLSFINHEYDIIVTT 888

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +     K    
Sbjct: 889 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPTNK---- 940

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 941 VLSETAEDRLQAIKEFTELG 960


>gi|300768957|ref|ZP_07078848.1| transcription-repair coupling factor [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|300493478|gb|EFK28655.1| transcription-repair coupling factor [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 1175

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 90/554 (16%), Positives = 196/554 (35%), Gaps = 58/554 (10%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q      +L GI  R + QL+ G+ GS +T  ++ +   +    +++  N   A+QL  +
Sbjct: 9   QTPDFQTILAGISPRSR-QLITGLNGSARTVYLSALFHQLTHSLLIVTDNGFHASQLVDD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F             P  +    + ++ + +    R  A  +LL  +  
Sbjct: 68  LTSLLDEDQVFLF-------------PAEEMIATEVATSSPESRAQRVQALNALLRDSPA 114

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           ++V+SV+     +  V  +    + + +G  ++ ++L   L    Y ++ +    G F V
Sbjct: 115 VIVTSVAGARRFLPPVAQFQAATLPVAVGQDIDLEDLQRQLHDMGYVKEKLVARPGDFAV 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++I+P    D   R+  F  +++ +  F P T + + N++   I   + ++     
Sbjct: 175 RGSIVDIYPLDA-DYPLRLDFFDTEVDTLKYFDPGTQRSVENLDEYTILPATDFILTTAM 233

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           L    + +K  +     +L    +  E Q L   +   L  +E       +  Y  YL  
Sbjct: 234 LQAGAQRLKTAIAAESKKL----KPAERQTLADNLAQPLADMEKGIIGNDLLLYGDYLYD 289

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC---M 508
           R       ++F+Y+  D L+  +E    +     +   +         +   L +     
Sbjct: 290 RK-----TSIFDYVAADGLVIFEEYSRLLDSEQQLLTQEADWVTDQLAHHRVLATASYGN 344

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           D R L  ++        ++     G   ++  Q   V    RP               Q+
Sbjct: 345 DIRDLLRDD---QHAQLLISLFQKGIGNVKLAQVTNVR--TRPMQEFF---------GQL 390

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             +  E++   +    ++L V        +++ L +  I              +    +L
Sbjct: 391 PALKTELDRWHKLKQTVVLMVSEAERLTKVSDTLDDFEIEAV-----------MTKATNL 439

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSK 685
           + G   ++     L+ G + P+  LV + + +    +  K    QT+    R     + K
Sbjct: 440 QPGAVQIV--QGSLQNGFEFPDGKLVIVTEQEMFKKVAKKRPRRQTLANAERLKSYTDLK 497

Query: 686 VILYADTITKSIQL 699
              Y   +   I  
Sbjct: 498 PGDYVVHVNHGIGK 511



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I    Q+  
Sbjct: 770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPIQTYVMEQNFGVIKEGIEREMQRNG 829

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   + +   +  V ++  ++   +   I+ D   G++DVLV   +
Sbjct: 830 QVFYLHNRVHDIDKVVAQIKDLVPDAAVAHIDGQMPESQLEGILYDFIRGEYDVLVTTTI 889

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+DIP    + + +AD+ G L     L   IGR++R
Sbjct: 890 IETGVDIPNVNTLFVENADRMG-LSQLYQLRGRIGRSSR 927


>gi|78043233|ref|YP_359072.1| transcription-repair coupling factor [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995348|gb|ABB14247.1| transcription-repair coupling factor [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 1160

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 98/515 (19%), Positives = 204/515 (39%), Gaps = 60/515 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             +LL+GI+ + ++QL+ G  G+ +TF MA V +A+ RP +V+  N+ +A ++  + + F
Sbjct: 15  FKRLLEGINKK-RIQLIYGSYGTARTFLMATVAKALNRPLLVITENEQVAREIAEDLEFF 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-NDCIVV 275
                  +F      +         D  + +      ++   R    + L        VV
Sbjct: 74  LGDKTSRFFYREGFLF---------DLTVRE----GGELKASRIELLKRLSRGEKPHTVV 120

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +  +       ++S+++   +L++GD VE +EL+  L +  Y+R D     G F   G  
Sbjct: 121 NYEALTRKYPPLQSFARWKRELRVGDVVELEELIRYLSQIGYERVDQVEAPGQFSQRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++++     +V +R   FG++I+ +      + +   N+  + IY     V     L   
Sbjct: 181 VDVYVPG--EVPFRAEFFGDEIDSLRALDVESQRSQANLNEVVIYPAEVAVAEEDLLLEV 238

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
            + I  +++ ++ +L ++ +   A RL+++     E+L   G  + IE    Y       
Sbjct: 239 KQKISADIEQQVKKLIQQNKREAAGRLKEKGA---EVLNILGKSEVIEKLLPYFWSG--- 292

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
               +L +Y  ++ L+F+DE      QI+ + +            G+ LP   +      
Sbjct: 293 ---VSLLDYFGDEYLVFLDEPGRFGEQINSLEKLRRESFTEALSGGYTLPKQAEVFYEEE 349

Query: 516 EEWNCLRPTTIVVS----ATP---GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           +    LR    V++     TP   G ++     G      +                 + 
Sbjct: 350 QLMALLRGRIAVITSLLPKTPRFIGDYDPHNFAGRKPPNYL----------------GKE 393

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +  +++I        RI +    +  A  L   L +RN    +    V+  E     R++
Sbjct: 394 KLFFEDIKNFLANNYRIFILRGREEAAVALKNELLKRNFPASF----VEKFEVEIAPREI 449

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           ++G       + +L  G + P+  L+   D +  G
Sbjct: 450 KIG-------LGVLNSGFEFPQQKLLVYTDVELAG 477



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 74/186 (39%), Gaps = 17/186 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV-----EDVYDEINLA 578
            + ++ATP    L      +    IR   +++ P E R   +T V       + D I   
Sbjct: 771 VLTLTATPIPRTL-----HMALMGIRDLSVLNTPPENRFPVQTYVLEEDPFIIRDAIRRE 825

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +G ++          +++  ++       +V   H ++K  +   ++ +   GK+DVL
Sbjct: 826 LGRGGQVFFVHNRVSDIDEVAAWVQSLVPEAKVAVAHGQMKEEQLERVMLEFISGKYDVL 885

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  G+D+P    + I +AD+ G  +    L Q  GR  R+             K 
Sbjct: 886 VSTTIIETGIDLPNVNTLIIKNADRFGLAQ----LYQLRGRVGRSNRIAYAYLMYEKDKV 941

Query: 697 IQLAID 702
           ++ A +
Sbjct: 942 LREAAE 947



 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 11/156 (7%)

Query: 76  GEFQSQSSISMSEKQTREISE---QTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSIN 132
           G  Q    +     +   +     Q +   V+A  R +      L   ++  P  ++S +
Sbjct: 547 GNLQKYVGVDGEPPKLSRLGGSDWQRVKNRVKAAVREMAEGLLELYAKRMAKPGFAFSPD 606

Query: 133 N-HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVI 189
               K+   F+ +  Y  + DQ  AI ++ + +   +   +LL G  G GKT   +    
Sbjct: 607 TVWQKE---FEERFPYEETPDQLKAIEEVKRDMEKPKVMDRLLCGDVGYGKTEVALRAAF 663

Query: 190 EAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +A+   +   V+ P  +LA Q Y+ FK  F    VE
Sbjct: 664 KAVMDGKQVAVLTPTTLLAQQHYNTFKERFSGYPVE 699


>gi|283768938|ref|ZP_06341847.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
           aureus H19]
 gi|283461119|gb|EFC08205.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
           aureus H19]
          Length = 1168

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 88/502 (17%), Positives = 190/502 (37%), Gaps = 68/502 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N     +L ++   F     +  + 
Sbjct: 22  GQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQVDKLETDLLQFIDAEELYKY- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++ +   + 
Sbjct: 81  ------------PVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLT 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L++G+ ++  + L+ LV   YKR+ +    G F +    I+IFP   E 
Sbjct: 129 PVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRAGIIDIFPLIGE- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   N+E + I   S Y+     +    + +K   + 
Sbjct: 188 -PIRIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVIRHLKEELKTAYEN 246

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              +++K  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 247 TRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMY--------------ETPST 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y  +D+++ VDE +        +        + + E G           ++++++  
Sbjct: 293 IIDYFQKDAIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQS---FIKYDDFET 349

Query: 521 LR---PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           L    P T   + AT    +L          II+ +        ++    Q + +  E  
Sbjct: 350 LIEGYPVTYFSLFATTMPIKLNH--------IIKFSCKP-----VQQFYGQYDIMRSEFQ 396

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++ V T+   E +   L E +I               ++ R +  G+   +
Sbjct: 397 RYVNQNYHIVVLVETETKVERMQAMLSEMHIPSI-----------TKLHRSMSSGQ--AV 443

Query: 637 VGINLLREGLDIPECGLVAILD 658
           +    L EG ++P+ GLV I +
Sbjct: 444 IIEGSLSEGFELPDMGLVVITE 465



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDG 828

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 829 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINNEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +          
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHP----ANK 938

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 939 VLTETAEDRLQAIKEFTELG 958



 Score = 38.5 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+   +Q++    + L  L +                 +     + + T F++   Y 
Sbjct: 569 KKTKAKVQQSVEDIAEELIDLYKERE----------MAEGYQYGEDTAEQTTFELDFPYE 618

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKI 204
            + DQ  +I ++   +  SR   +LL G  G GKT    +         +    + P  I
Sbjct: 619 LTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTI 678

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           LA Q Y           VE  +        E
Sbjct: 679 LAQQHYETLIERMQDFPVEIQLMSRFRTPKE 709


>gi|307944240|ref|ZP_07659581.1| UvrABC system protein B [Roseibium sp. TrichSKD4]
 gi|307772586|gb|EFO31806.1| UvrABC system protein B [Roseibium sp. TrichSKD4]
          Length = 284

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 90/157 (57%), Positives = 114/157 (72%), Gaps = 1/157 (0%)

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
              GLDIPECGLVAILDADKEGFLRS+TSLIQTIGRAARNV+ +VILYAD +T S+  AI
Sbjct: 8   AARGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADNMTGSMDRAI 67

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761
            ET RRREKQL +N++H I P+SVK  I ++++ +  +D  T      A+  +L     K
Sbjct: 68  KETNRRREKQLAYNEEHGITPESVKRSIGDILESVYEQDHVTVEAGF-AEDGNLVGHNLK 126

Query: 762 AHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
           AH++ L KQM  AA +L+FE AAR+RDEIKRL+ +  
Sbjct: 127 AHIEDLEKQMRDAAADLDFETAARLRDEIKRLQETEL 163


>gi|189423769|ref|YP_001950946.1| transcription-repair coupling factor [Geobacter lovleyi SZ]
 gi|189420028|gb|ACD94426.1| transcription-repair coupling factor [Geobacter lovleyi SZ]
          Length = 1165

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 109/529 (20%), Positives = 190/529 (35%), Gaps = 52/529 (9%)

Query: 148 HPSGDQ---PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
            P+  Q    AAIA+L + +        L G+ GS     +A++   + R  +V+A ++ 
Sbjct: 3   EPTPSQRCPVAAIARLAEQLRHGAHPATLTGLAGSAPALAVAELSRLLPRQIVVIAADQA 62

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
            A +L  E   F   NAV                P  DT   + +S +  I   R    +
Sbjct: 63  AADELTRELLFF---NAVNVSPF-----------PAWDTCPFEAASPHPDISGARLETLQ 108

Query: 265 SLLERNDCIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
            LL+ + C VV+ V+ +   I      +     +K GD  +++ LL  LV+  Y    + 
Sbjct: 109 RLLQGSPCTVVAPVAALMQRIIPRSLLTGASCAIKPGDEPDREALLEGLVRMGYTNCPLV 168

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
             RG+F V G  ++IFP  L     R+  FG+ +E +  F PL  + + ++  + +  + 
Sbjct: 169 EERGSFAVRGGILDIFPPSL-PRPVRIEFFGDTVETLRSFDPLNQRSLESLTCLNLLPSR 227

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
             +     L   +      LK R  +L+             R    +  L+  G    +E
Sbjct: 228 ELILSPAALQEFIPR----LKERADQLDIPAD---------RRRQLVSELQGAGYPPGVE 274

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
                     PG    + F Y+  ++ L V +    + Q +  ++ D       A    R
Sbjct: 275 FLQPLFH---PGLQ--SFFAYL--NNPLLVLQEPDLLRQAAQQHQTDVTSGVQKAAAEER 327

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEI- 561
           L        L  +E++ L         T     L        + + IR     D  + + 
Sbjct: 328 LHPAPYQLYLTQDEFSQLLDQ----QQTLALRRLTVAGESSADLVQIRSEDNSDLRISMA 383

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R  +  +  + + +        R L+       AE L E L    I      ++    E 
Sbjct: 384 RDQQHLLGPLAERLKQWHAANWRTLVVCHHPSQAERLQELLTPYGISCSLGTTDPFGPEA 443

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
             +  DL       L+ I  L  G  +PE  L  I + +  G    + S
Sbjct: 444 PSVHTDL-------LLVIGELSRGFRLPESKLAVIAEEELFGKRTRRKS 485



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 4/158 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    II    +    ++   AR   + + D I    ++G 
Sbjct: 776 IMTLTATPIPRTLHLSMLGIRDLSIIDTPPVDRQAIKTVVARDTDDLIRDAITRELERGG 835

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++            + E L +   + R    H +++  E  +++     G+ D+L+   +
Sbjct: 836 QVFYVHNRAHSIGIVAERLRQLVPQARISVAHGQMEEKELEKVMLTFMHGQSDLLLTTTI 895

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +  GLDIP    + +  AD  G L     L   IGR+ 
Sbjct: 896 IESGLDIPRANTMLVDRADTFG-LSQLYQLRGRIGRST 932


>gi|325838706|ref|ZP_08166621.1| transcription-repair coupling factor [Turicibacter sp. HGF1]
 gi|325490756|gb|EGC93063.1| transcription-repair coupling factor [Turicibacter sp. HGF1]
          Length = 1176

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 98/507 (19%), Positives = 183/507 (36%), Gaps = 53/507 (10%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +  L+K +   ++  LL GVT S     +  + E  QRP +++  N   A +LY +  N 
Sbjct: 14  LDSLMKTLEGEQRNILLSGVTSSFYGPLLQMIYEKQQRPVVILMQNLYHAQRLYDQLSNL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
               +V  F             P  +    +  + + ++   R +   S+LE    IV++
Sbjct: 74  MDEGSVRLF-------------PMDEFITAEMLASSSELRIERMNTLASILENEVKIVIT 120

Query: 277 SVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+      + +S + Q  + L+ G   E  +L   LV+  Y         G F V G  
Sbjct: 121 HVAGATRFLTPKSIFEQAEIILECGHEYELDKLKRKLVELGYNSVRAVERMGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+IFP   E+   R+  F ++++ I  F   T + I  ++ I I      V     +   
Sbjct: 181 IDIFPM-TEENPIRIEFFDDEVDSIRYFSTETQRSIHQIQKISIPPTYELVYSDKQVEVF 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              IK  L   L  L     +    +L +++  D+E ++   + + +  Y   L      
Sbjct: 240 EAQIKSRLSKTLKLL----DIETQDQLREKVFNDIENIKNHNNLEIMHKYISLLY----- 290

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E P TL  Y     ++++D + +   Q   M       +      G  +      RP+  
Sbjct: 291 ENPDTLLSYFTNPLVIYIDYNRIIENQNH-MNEDALSWQEGAIINGKTVVDLNLYRPITE 349

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDE 574
                       + A+   + LE    +   Q ++ T  V    + +     Q+E    E
Sbjct: 350 ------------IEASTQLYLLEHTSQL---QDVKLTDTVKILTKSVSEFHGQLEFFAKE 394

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                +    + + V +      L  YL E  I V      + T        ++R G   
Sbjct: 395 CKRLKENKSTVFIAVSSVESRNKLANYLEESGIMVA-----IPTQP-----DEVREGSIH 444

Query: 635 VLVGINLLREGLDIPECGLVAILDADK 661
           ++     L  G ++ +  +V   D + 
Sbjct: 445 II--YEPLPLGFELIDSNIVVYTDYEI 469



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+    GI    +I    +   PV+          + D I     +  
Sbjct: 769 VLTLTATPIPRTLQMSMIGIRSLSLIETPPMNRYPVQTYVLEEHDGVIRDAIERELARDG 828

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     + +   +  V Y H ++   +  + + D    KF+VLV   +
Sbjct: 829 QVFYLYNRVSDIEKRAARIKKLVPDAIVEYAHGQMSKEQLEQTMADFEDKKFNVLVCTTI 888

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I D+ + G  +    L Q  GR  R+             K     +
Sbjct: 889 IETGIDIPNANTLIISDSYRLGLSQ----LYQLRGRVGRSDRIAYAYCMYPKNK----VL 940

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 941 TENAEKRLQTIKEFTELG 958



 Score = 38.2 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           T+LTK+  E       +  +++  ++  V   E+ E++ +++ GK D++VG + LL + +
Sbjct: 677 TILTKQHYESFVSRFKDFPVKIGLLNRYVSLKEQQELLTNIKSGKIDIVVGTHRLLSKDV 736

Query: 647 DIPECGLVAILDADKEG 663
              + GL+ I +  + G
Sbjct: 737 KFKDLGLLIIDEEQRFG 753


>gi|293375931|ref|ZP_06622192.1| transcription-repair coupling factor [Turicibacter sanguinis PC909]
 gi|292645453|gb|EFF63502.1| transcription-repair coupling factor [Turicibacter sanguinis PC909]
          Length = 1176

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 98/507 (19%), Positives = 183/507 (36%), Gaps = 53/507 (10%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +  L+K +   ++  LL GVT S     +  + E  QRP +++  N   A +LY +  N 
Sbjct: 14  LDSLMKTLEGEQRNILLSGVTSSFYGPLLQMIYEKQQRPVVILMQNLYHAQRLYDQLSNL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
               +V  F             P  +    +  + + ++   R +   S+LE    IV++
Sbjct: 74  MDEGSVRLF-------------PMDEFITAEMLASSSELRIERMNTLASILENEVKIVIT 120

Query: 277 SVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+      + +S + Q  + L+ G   E  +L   LV+  Y         G F V G  
Sbjct: 121 HVAGATRFLTPKSIFEQAEIILECGHEYELDKLKRKLVELGYNSVRAVERMGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+IFP   E+   R+  F ++++ I  F   T + I  ++ I I      V     +   
Sbjct: 181 IDIFPM-TEENPIRIEFFDDEVDSIRYFSTETQRSIHQIQKISIPPTYELVYSDKQVEVF 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              IK  L   L  L     +    +L +++  D+E ++   + + +  Y   L      
Sbjct: 240 EAQIKSRLSKTLKLL----DIETQDQLREKVFNDIENIKNHNNLEIMHKYISLLY----- 290

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E P TL  Y     ++++D + +   Q   M       +      G  +      RP+  
Sbjct: 291 ENPDTLLSYFTNPLVIYIDYNRIIENQNH-MNEDALSWQEGAIINGKTVVDLNLYRPITE 349

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDE 574
                       + A+   + LE    +   Q ++ T  V    + +     Q+E    E
Sbjct: 350 ------------IEASTQLYLLEHTSQL---QDVKLTDTVKILTKSVSEFHGQLEFFAKE 394

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                +    + + V +      L  YL E  I V      + T        ++R G   
Sbjct: 395 CKRLKENKSTVFIAVSSVESRNKLANYLEESGIMVA-----IPTQP-----DEVREGSIH 444

Query: 635 VLVGINLLREGLDIPECGLVAILDADK 661
           ++     L  G ++ +  +V   D + 
Sbjct: 445 II--YEPLPLGFELIDSNIVVYTDYEI 469



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+    GI    +I    +   PV+          + D I     +  
Sbjct: 769 VLTLTATPIPRTLQMSMIGIRSLSLIETPPMNRYPVQTYVLEEHDGVIRDAIERELARDG 828

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     + +   +  V Y H ++   +  + + D    KF+VLV   +
Sbjct: 829 QVFYLYNRVSDIEKRAARIKKLVPDAIVEYAHGQMSKEQLEQTMADFEDKKFNVLVCTTI 888

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I D+ + G  +    L Q  GR  R+             K     +
Sbjct: 889 IETGIDIPNANTLIISDSYRLGLSQ----LYQLRGRVGRSDRIAYAYCMYPKNK----VL 940

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 941 TENAEKRLQTIKEFTELG 958



 Score = 39.3 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           T+LTK+  E       E  +++  ++  V   E+ E++ +++ GK D++VG + LL + +
Sbjct: 677 TILTKQHYESFVSRFKEFPVKIGLLNRYVSLKEQQELLTNIKSGKIDIVVGTHRLLSKDV 736

Query: 647 DIPECGLVAILDADKEG 663
              + GL+ I +  + G
Sbjct: 737 KFKDLGLLIIDEEQRFG 753


>gi|289433569|ref|YP_003463441.1| transcription-repair coupling factor [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289169813|emb|CBH26351.1| transcription-repair coupling factor [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 1178

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 80/505 (15%), Positives = 193/505 (38%), Gaps = 45/505 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNSLDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   L+     IV+ 
Sbjct: 74  MEADRLFLY-------------PADELISSELSISSPELRGQRVEALDFLISGKPGIVIV 120

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    S  +     +  G+ ++ + L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPEVLRQQLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTSRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +  +++++ + L EL+      E +  +  +    E LE   S    + + +Y+    P 
Sbjct: 240 VNRLEKKMMLTLNELK------EKEDKQALVENLEEELEMLRSGVKPDMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +LF+Y P+++ + +DE    +     + + +   +        R+ +  D +    
Sbjct: 294 --PASLFDYFPKNTAILLDEFARILETEESLEKEEAEWQTETLS---RMETVRDVQVSHS 348

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            + +  +        +P  +     + +   ++ + T +V     ++    Q+  +  E+
Sbjct: 349 FKKSLEKNH------SPKIYLTLFQKQMASMRVSKTTNIVYKQ--MQQFHGQMNVLKTEL 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    +++       AE + + L + ++    +  E             + G    
Sbjct: 401 ESWHKNNYAVVILAPNLERAEKMQQTLADYDMESTILKKESDVP---------KYGMVQF 451

Query: 636 LVGINLLREGLDIPECGLVAILDAD 660
           +VG    + G ++P   +  I +++
Sbjct: 452 VVGT--FQNGFELPLAKVAIISESE 474



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 73/188 (38%), Gaps = 14/188 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+   A      V + I     +  
Sbjct: 775 VLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDG 834

Query: 584 RILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++           + A++++  + +  + +   H ++   E   +I     G+FDVLV  
Sbjct: 835 QVYYLYNRVETITQKADEISAMVPDARVAIA--HGQMGESELESVILSFLEGEFDVLVTT 892

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G L     L   +GR  R   +  +   D I +    
Sbjct: 893 TIIETGVDIPNVNTLFVQDADRMG-LSQLYQLRGRVGRWNRIAYAYFMYQKDKILR---- 947

Query: 700 AIDETTRR 707
             +E  +R
Sbjct: 948 --EEAEKR 953


>gi|294637391|ref|ZP_06715684.1| excinuclease ABC subunit B [Edwardsiella tarda ATCC 23685]
 gi|291089438|gb|EFE21999.1| excinuclease ABC subunit B [Edwardsiella tarda ATCC 23685]
          Length = 185

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 96/181 (53%), Positives = 120/181 (66%), Gaps = 7/181 (3%)

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           IIRDLRLG+FD LVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAARN+N
Sbjct: 1   IIRDLRLGEFDALVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLN 60

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI---DPILLED 740
            K ILY D+IT S+  AI ET RRRE+Q   N  H I PQ++ +K+ +++   D      
Sbjct: 61  GKAILYGDSITPSMARAIGETERRRERQQAFNLAHGIVPQALNKKVTDILQLGDAATRGR 120

Query: 741 AATTNISIDAQQL----SLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
              T     A+       LS K+ +  ++ L  QM+  A NL FE+AA +RDEI +L+  
Sbjct: 121 GKGTRGQRAAEPQRAYSGLSAKQLEQQIQRLESQMYQHAQNLEFEQAAALRDEIHQLREQ 180

Query: 797 P 797
            
Sbjct: 181 F 181


>gi|242371667|ref|ZP_04817241.1| transcription-repair coupling factor [Staphylococcus epidermidis
           M23864:W1]
 gi|242350616|gb|EES42217.1| transcription-repair coupling factor [Staphylococcus epidermidis
           M23864:W1]
          Length = 1169

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 89/499 (17%), Positives = 184/499 (36%), Gaps = 62/499 (12%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+      +  +++  N   A ++ ++   +   + V  + 
Sbjct: 23  GQDNILVTGLSPSAKATIIAEKYLKDHKQLLLVTNNLYQADKIEADLLQYVDGSEVYKY- 81

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++     + 
Sbjct: 82  ------------PVQDIMTEEFSTQSPQLMSERVRTLTALAQGVKGLFIVPLNGFKKWLT 129

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + LK+G+ ++    L+ LV   Y+R+ +    G F + G  I+I+P     
Sbjct: 130 PVEMWQSHQMTLKVGEDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIG-- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +++ I +F   T +   N+E ++I   S Y+     +     ++KE  + 
Sbjct: 188 TPVRIELFDTEVDSIRDFDVETQRSNENIEEVEITTASDYIITDEVIQHLQTHLKEAYEH 247

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              ++EK  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 248 TRPKIEKSVRNDLKETYESFKLFESTFFDHQLLRRLVAFMY--------------EQPST 293

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y  +D+++ VDE +        +          L E G         +   FE    
Sbjct: 294 IIDYFRDDAIIAVDEFNRVKETEETLTTEVDDFIGNLIESGNGFIGQSFMKYDGFETLLE 353

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            RP       T           + +E II+ +        ++    Q + +  E      
Sbjct: 354 KRPVAYFTLFT-------SSMQVPLEHIIKFSCKP-----VQQFYGQYDIMRSEFQRFIH 401

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               I++ V T+   E +   L E +I  V ++H +V +                 +V  
Sbjct: 402 NDYTIMVLVETETKVERIQSMLNEMHIPTVSHIHEKVDS--------------GQAIVTE 447

Query: 640 NLLREGLDIPECGLVAILD 658
             L EG ++P   LV I +
Sbjct: 448 GSLSEGFELPYMQLVVITE 466



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 11/184 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +  
Sbjct: 770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDG 829

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 830 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINHEYDILVTT 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I +AD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 888 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPANKVLNE 943

Query: 700 AIDE 703
             +E
Sbjct: 944 TAEE 947


>gi|164688875|ref|ZP_02212903.1| hypothetical protein CLOBAR_02523 [Clostridium bartlettii DSM
           16795]
 gi|164602079|gb|EDQ95544.1| hypothetical protein CLOBAR_02523 [Clostridium bartlettii DSM
           16795]
          Length = 1131

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 87/515 (16%), Positives = 191/515 (37%), Gaps = 72/515 (13%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +++  I  R+    L G+    K      + + + RP + +A + + A ++Y+E + + 
Sbjct: 16  KEIINSICERKGALQLNGLLDMQKPHITYSIFKELARPTLFIANSDLEAKKVYNELRFYT 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
                              Y+   + Y     + +   +  +      L ++   IVV+S
Sbjct: 76  KDKV--------------EYLGTDEIYFYHLDAKDRSEEAKKLRVLLKLAKKQKTIVVTS 121

Query: 278 VSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           V  I       +     I   KIGD +  +EL  +LV+  Y+R       G F + G  I
Sbjct: 122 VDAILRKYIPKKVLLDNIFTYKIGDIINLEELSQNLVRLGYERVSRIEGLGQFSIRGGII 181

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +++     +   R+ +F ++I+ I  F   + + I  ++ + I  +  ++ P  T  +A+
Sbjct: 182 DVYSLEYTN-PIRIELFDDEIDSIRTFDVFSQKSIDKIKKVVITPSREFIYPEDTT-SAV 239

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           + IKEE      +   +  L   + +  R              Q +ENY  YL      +
Sbjct: 240 EKIKEETN----KYTDDDVLKNIENISDRT-----------YFQGVENYIDYLY----DD 280

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              ++F Y+P++ ++ + +      +                          DN  L  E
Sbjct: 281 QNKSIFSYLPDNGIVVMSDISRLKERCENYLNEF-----------------KDNYNLNLE 323

Query: 517 EWNCLRPT-TIVVSATPGSWELEQCQGIIVEQIIRPTG--LVDPPV-----EIRSARTQV 568
               ++    ++ S     + LE  + II   + +P     V+  +     EI +  +++
Sbjct: 324 RGLAIKNQGNLIYSYEELPYILEDKKLIINSLLAKPINGFSVNNVIDFNSREIPAYNSKL 383

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + + +++N     G +I+L V +    + L + L +  + V            I   R+ 
Sbjct: 384 DTLVEDLNRFKYNGYKIILAVNSSDRCKKLQKDLLDLGLEVG-----------ISKSRNT 432

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            +    +++    + +G +        I D +  G
Sbjct: 433 EIKSSQIIIVPANISKGFEYKSIKFQVITDTEIIG 467



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 11/194 (5%)

Query: 520 CLRPTTIVV---SATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                T+ V   SATP    L     GI    +I        PV    A  +   + DEI
Sbjct: 759 KKIKNTVDVLTLSATPIPRTLHMSLSGIRDMSVIEEPPQERHPVITYVAEAKESIIQDEI 818

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                +G ++          E++   +       +V   H  + +     II      ++
Sbjct: 819 EREIARGGQVFFVYNRVEHIEEMASMVQRLVPEAKVAVAHGRMTSKTLENIILGFLNKEY 878

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           DVLV   ++  G+DI     + I DADK G  +    L   +GR++R   + ++   D +
Sbjct: 879 DVLVCTTIVETGMDISNANTMIIYDADKMGLAQ-LYQLRGRVGRSSRQGYAYLMYEKDKV 937

Query: 694 TKSIQ----LAIDE 703
              +      AI E
Sbjct: 938 LSEVAEKRLKAIRE 951


>gi|227528907|ref|ZP_03958956.1| transcription-repair coupling factor [Lactobacillus vaginalis ATCC
           49540]
 gi|227351181|gb|EEJ41472.1| transcription-repair coupling factor [Lactobacillus vaginalis ATCC
           49540]
          Length = 1170

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 100/544 (18%), Positives = 209/544 (38%), Gaps = 76/544 (13%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
               Q+L  I   ++ QL+ G++GS +T  +  + +++ +P +V+  +     +L ++ +
Sbjct: 11  KEFKQVLTAIQKHQR-QLITGISGSARTLLLTALQKSLNQPQLVITDSLFHMQELAADLE 69

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           N  P   +  F             P  +    + ++ +      R  A  +L+     IV
Sbjct: 70  NLLPEEEIYQF-------------PVEEVLAAEVATSSPNYRLQRVQALNALINNKPAIV 116

Query: 275 VSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           ++S + +   I + E + Q  + LK+G  ++ ++    L    Y+RQ + +  G F V G
Sbjct: 117 IASTAGLRRNIVAPELFKQAELSLKVGGEIDPEKAADQLSSMGYQRQKMVLRPGDFAVRG 176

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+I+  + +D   RV +F  +I+ +  F   T + I+NVE ++I   + ++ P     
Sbjct: 177 SIIDIYSLNTDD-PVRVDLFDTEIDSLRYFDASTQRSIKNVEEVEILPATDFILPVNEFK 235

Query: 394 TAMKYIKEELKMRLIELEKEGRLL-EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
                ++E+L  +  +L+++     E ++L  R    L  L+          Y+  +  +
Sbjct: 236 R----VEEKLAEQYEQLKRQVDGEDELEQLANRFEPLLTDLKQHQLTNEFLTYTNLIYPQ 291

Query: 453 NPGEPPPTLFEYIPEDSLLFVDE---SHVTIPQISGMYRGDFHRKA------TLAEYGF- 502
                  +L +Y+  D ++ +D+      T  +IS    G    KA           G  
Sbjct: 292 E-----HSLLDYLSADGVVHIDDWTRIKQTAKEISEEELGWLEDKAKHHQILHAVSLGHD 346

Query: 503 --RLPSCMDNRPLRFEEWNCLRPTTIVVSATP-GSWELEQCQGIIVEQIIRPTGLVDPPV 559
             +L S   +    +  +          + T  GS  +++                    
Sbjct: 347 VGQLISRDKHAQDFWALFRKGMGQLRFKALTDFGSRTMQR-------------------- 386

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
                  Q+  +  E+     QG  ++L   +K     + + + +  I+V          
Sbjct: 387 ----FFGQMPLLKTEMQRWLDQGQTVILMATSKERRNQIAQTMDDFGIKVT--------- 433

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
                +  L+      LV  NL   G +IP+ GLV I + +    ++ +    Q +  A 
Sbjct: 434 --STELNHLQQNIVQ-LVPTNLAN-GFEIPQMGLVIITEGEMFKQVKKRRIRPQKLANAE 489

Query: 680 RNVN 683
           R  N
Sbjct: 490 RIKN 493



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 7/174 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          + D I    Q+G 
Sbjct: 771 VLTLTATPIPRTLHMSMLGVRDLSVLETPPAGRYPIQTYVMEQNSGAIRDGILREMQRGG 830

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E+    L +     R  Y+  ++   +   ++ +   G +DVLV  ++
Sbjct: 831 QVYYLHNRVMDIEETVARLQQLVPEARIGYIDGQMSENQLESVLYEFIQGGYDVLVTTSI 890

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  G+DIP    + + +AD+ G  +    L Q  GR  R+       +     K
Sbjct: 891 IETGVDIPNVNTLFVENADRMGLAQ----LYQIRGRIGRSNRVAYAYFMYQPNK 940


>gi|315274585|ref|ZP_07869461.1| transcription-repair-coupling factor [Listeria marthii FSL S4-120]
 gi|313615787|gb|EFR89039.1| transcription-repair-coupling factor [Listeria marthii FSL S4-120]
          Length = 770

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 82/505 (16%), Positives = 193/505 (38%), Gaps = 45/505 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +LK +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLKALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  IDVDRLFLY-------------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    S +    + +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKDFNISIAEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ +++++ + L EL+++                 E LE   S    + + +Y+    P 
Sbjct: 240 VQRLEKKMTLTLNELKEDADKQALVENL------EEELEMLRSGVKPDMFFKYIGLAYPD 293

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +LF+Y+P+++ + +DE    +     + R +   +        R+ +  D +    
Sbjct: 294 --PASLFDYLPKNTAILLDEFARILETEESLEREEAEWQTETLS---RMETVRDVQVS-- 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +  L    +  + +P  +     + +   +  + T +V     ++    Q+  +  E+
Sbjct: 347 HSFKKL----LEANQSPKIYLSLFQKQMASMRASKTTNIVYKQ--MQQFHGQMNVLKTEL 400

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    +++       AE + + L + ++    +  E             + G    
Sbjct: 401 ESWHKNNYSVVILAPNLERAEKMQQTLADYDMESTILKEESDVP---------KYGMVQF 451

Query: 636 LVGINLLREGLDIPECGLVAILDAD 660
           ++G    + G ++P   +  I + +
Sbjct: 452 VIGT--FQNGFELPLAKVAIISETE 474


>gi|223933455|ref|ZP_03625440.1| transcription-repair coupling factor [Streptococcus suis 89/1591]
 gi|223897893|gb|EEF64269.1| transcription-repair coupling factor [Streptococcus suis 89/1591]
          Length = 1164

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 106/545 (19%), Positives = 210/545 (38%), Gaps = 66/545 (12%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I Q   G++   + QLLLG+TG+ K+  MA   ++M    +++   +  A +L ++    
Sbjct: 13  INQWQSGLNKSTR-QLLLGLTGTSKSLVMATAYDSMAEKIMIVTATQNDAEKLVADLVAI 71

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  F +           P  +     +     +ID +           +  +V S
Sbjct: 72  IGSENVYNFFTDDS--------PIAEFVFASKERTQSRIDSLNFLTDS---TSSGILVAS 120

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
             +C   + S E+Y    ++L++G  +E  +L+++LV   YK+    + +G F   GD +
Sbjct: 121 MAACRVLLPSPETYKGSKIKLEVGQEIEVDKLVNNLVNIGYKKVSRVLTQGEFSQRGDIL 180

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IF    E   +R+  FG++I+ I  F   + + + N++ I I   S  +      + A 
Sbjct: 181 DIFDMQAE-TPYRIEFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYSRAS 239

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           +YI+                +E   LE++ +Y  E+L    +     +  ++L+     E
Sbjct: 240 QYIQT--------------AIEQSTLEEQQSYLREVLADMQTEYRHPDLRKFLSCIY--E 283

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TL +Y+P+ S LF+D+ H    + +   +          + G  + S +      + 
Sbjct: 284 QSWTLLDYLPKSSPLFLDDFHKISDKQAQFEKEIADLLTDDLQKGKTV-SSLKYFASTYA 342

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           E    +P T   S   G   L   +   + Q  +          ++    Q+  + DE+ 
Sbjct: 343 ELRKYKPATFFSSFQKG---LGNVKFDALYQFTQHP--------MQEFFHQIPLLKDELT 391

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             A+    +++   +    + L + L E +I +            +     L  G+  V 
Sbjct: 392 RYAKSNNTVVIQASSDVSLQTLQKTLQEYDIHLP-----------VHAADKLVEGQQQVT 440

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +    L  G  + +  LV I   +KE F +          +  R      I  A+ I   
Sbjct: 441 I--GQLASGFHLMDEKLVFI--TEKEIFNK----------KMKRKTRRTNISNAERIKDY 486

Query: 697 IQLAI 701
            +LA+
Sbjct: 487 SELAV 491



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+    GI    +I        PV+     T    + D +     +G 
Sbjct: 763 VLTLTATPIPRTLQMSMLGIRDLSVIETPPTNRYPVQTYVMETNPSVIRDAMLREIDRGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        Y+H ++  ++    +     G++D+LV   +
Sbjct: 823 QVYYLYNKVDTIEQKVSELKELVPEATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTI 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I +AD  G L +   L   +GR++R      I YA  + +  +   
Sbjct: 883 IETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSSR------IAYAYLMYRPDKSLT 935

Query: 702 DETTRRRE 709
           +   +R E
Sbjct: 936 EVAEKRLE 943


>gi|302023115|ref|ZP_07248326.1| transcription-repair coupling factor [Streptococcus suis 05HAS68]
 gi|330831857|ref|YP_004400682.1| transcription-repair coupling factor [Streptococcus suis ST3]
 gi|329306080|gb|AEB80496.1| transcription-repair coupling factor [Streptococcus suis ST3]
          Length = 1164

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 106/545 (19%), Positives = 210/545 (38%), Gaps = 66/545 (12%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I Q   G++   + QLLLG+TG+ K+  MA   ++M    +++   +  A +L ++    
Sbjct: 13  INQWQSGLNKSTR-QLLLGLTGTSKSLVMATAYDSMAEKIMIVTATQNDAEKLVADLVAI 71

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  F +           P  +     +     +ID +           +  +V S
Sbjct: 72  IGSENVYNFFTDDS--------PIAEFVFASKERTQSRIDSLNFLTDS---TSSGILVAS 120

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
             +C   + S E+Y    ++L++G  +E  +L+++LV   YK+    + +G F   GD +
Sbjct: 121 MAACRVLLPSPETYKGSKIKLEVGQEIEVDKLVNNLVNIGYKKVSRVLTQGEFSQRGDIL 180

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IF    E   +R+  FG++I+ I  F   + + + N++ I I   S  +      + A 
Sbjct: 181 DIFDMQAE-TPYRIEFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYSRAS 239

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           +YI+                +E   LE++ +Y  E+L    +     +  ++L+     E
Sbjct: 240 QYIQT--------------AIEQSTLEEQQSYLREVLADMQTEYRHPDLRKFLSCIY--E 283

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TL +Y+P+ S LF+D+ H    + +   +          + G  + S +      + 
Sbjct: 284 QSWTLLDYLPKSSPLFLDDFHKISDKQAQFEKEIADLLTDDLQKGKTV-SSLKYFASTYA 342

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           E    +P T   S   G   L   +   + Q  +          ++    Q+  + DE+ 
Sbjct: 343 ELRKYKPATFFSSFQKG---LGNVKFDALYQFTQHP--------MQEFFHQIPLLKDELT 391

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             A+    +++   +    + L + L E +I +            +     L  G+  V 
Sbjct: 392 RYAKSNNTVVIQASSDVSLQTLQKTLQEYDIHLP-----------VHAADKLVEGQQQVT 440

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +    L  G  + +  LV I   +KE F +          +  R      I  A+ I   
Sbjct: 441 I--GQLASGFHLMDEKLVFI--TEKEIFNK----------KMKRKTRRTNISNAERIKDY 486

Query: 697 IQLAI 701
            +LA+
Sbjct: 487 SELAV 491



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+    GI    +I        PV+     T    + D +     +G 
Sbjct: 763 VLTLTATPIPRTLQMSMLGIRDLSVIETPPTNRYPVQTYVMETNPSVIRDAMLREIDRGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        Y+H ++  ++    +     G++D+LV   +
Sbjct: 823 QVYYLYNKVDTIEQKVSELKELVPEATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTI 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I +AD  G L +   L   +GR++R      I YA  + +  +   
Sbjct: 883 IETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSSR------IAYAYLMYRPDKSLT 935

Query: 702 DETTRRRE 709
           +   +R E
Sbjct: 936 EVAEKRLE 943


>gi|223044420|ref|ZP_03614453.1| transcription-repair coupling factor [Staphylococcus capitis SK14]
 gi|222442209|gb|EEE48321.1| transcription-repair coupling factor [Staphylococcus capitis SK14]
          Length = 1169

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 86/499 (17%), Positives = 187/499 (37%), Gaps = 62/499 (12%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            ++  L+ G++ S K   +A+     Q+  +++  N   A ++ ++   +   + V  + 
Sbjct: 23  GQENILVTGLSPSAKATIIAEKYLKDQKQLLLVTNNLYQADKIEADLLQYVDGSEVYKY- 81

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++     + 
Sbjct: 82  ------------PVQDIMTEEFSTQSPQLMSERVRTLTALAQGQRGLFIVPLNGFKKWLT 129

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            V+ +    + LK+G+ ++ +  L+ LV   Y+R+ +    G F + G  I+I+P     
Sbjct: 130 PVDMWKNHQMTLKVGEDIDVEAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIGS- 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +++ I +F   T +   N++ + I   S Y+     +     ++KE  + 
Sbjct: 189 -PVRIELFDTEVDSIRDFDVETQRSNENLDEVDITTASDYIITDEVIQHLQTHLKEAYEH 247

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              ++EK  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 248 TRPKIEKSVRNDLKETYESFKLFESTFFDHQLLRRLVAFMY--------------EQPST 293

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y  +D+++ VDE +        +        + L E G         +   FE    
Sbjct: 294 IIDYFRDDAVIAVDEFNRVKETEETLTTEVDDFISNLIESGNGFIGQSFMKYDGFETLLE 353

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            +P       T           + ++ II+ +        ++    Q + +  E      
Sbjct: 354 KKPVAYFTLFT-------SSMQVPLQHIIKFSCKP-----VQQFYGQYDIMRSEFQRYVH 401

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               I++ V T+   E +   L E +I  V ++H +V +                 +V  
Sbjct: 402 NDYTIMVLVETETKVERIQSMLNEMHIPTVSHIHEKVDS--------------GQAIVTE 447

Query: 640 NLLREGLDIPECGLVAILD 658
             L EG ++P   LV I +
Sbjct: 448 GSLSEGFELPYMQLVVITE 466



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 66/184 (35%), Gaps = 11/184 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +  
Sbjct: 770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDG 829

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + E NI V   H ++   +  E +      ++D+LV  
Sbjct: 830 QVFYLYNKVQSIYEKREQLQMLMPEANIAVA--HGQMTERDLEETMLSFINHEYDILVTT 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I +AD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 888 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPANKVLNE 943

Query: 700 AIDE 703
             +E
Sbjct: 944 TAEE 947


>gi|146317670|ref|YP_001197382.1| transcription-repair coupling factor [Streptococcus suis 05ZYH33]
 gi|253750931|ref|YP_003024072.1| transcription-repair coupling factor [Streptococcus suis SC84]
 gi|253752830|ref|YP_003025970.1| transcription-repair coupling factor [Streptococcus suis P1/7]
 gi|253754655|ref|YP_003027795.1| transcription-repair coupling factor [Streptococcus suis BM407]
 gi|145688476|gb|ABP88982.1| Transcription-repair coupling factor (superfamily II helicase)
           [Streptococcus suis 05ZYH33]
 gi|251815220|emb|CAZ50784.1| putative transcription-repair coupling factor [Streptococcus suis
           SC84]
 gi|251817119|emb|CAZ54840.1| putative transcription-repair coupling factor [Streptococcus suis
           BM407]
 gi|251819075|emb|CAR44089.1| putative transcription-repair coupling factor [Streptococcus suis
           P1/7]
 gi|292557472|gb|ADE30473.1| Transcription-repair coupling factor [Streptococcus suis GZ1]
          Length = 1164

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 106/545 (19%), Positives = 209/545 (38%), Gaps = 66/545 (12%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I Q   G++   + QLLLG++G+ K+  MA   + +    +++   +  A +L ++    
Sbjct: 13  INQWQSGLNQSTR-QLLLGLSGTSKSLIMATAYDCLAEKIMIVTATQNDAEKLVADLTAI 71

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  F +           P  +     +     +ID +           +  +V S
Sbjct: 72  IGSENVYNFFTDDS--------PIAEFVFASKERTQSRIDSLNFLTDS---TSSGILVAS 120

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
            V+C   + S E+Y    +QL++G  +E  +L+ +LV   YK+    + +G F   GD +
Sbjct: 121 IVACRVLLPSPETYKGSKIQLEVGQEIEVDKLVKNLVNIGYKKVSRVLTQGEFSQRGDIL 180

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IF    E   +R+  FG++I+ I  F   + + + N++ I I   S  +      + A 
Sbjct: 181 DIFDMQSE-TPYRIEFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYSRAS 239

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           +YI+                +E   LE++ +Y  E+L    +     +  ++L+     E
Sbjct: 240 QYIQT--------------AIEQSTLEEQQSYLREVLADMQTEYRHPDLRKFLSCIY--E 283

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TL +Y+P+ S LF+D+ H    + +   +          + G  + S +      + 
Sbjct: 284 QSWTLLDYLPKSSPLFLDDFHKIADKQAQFEKEIADLLTDDLQKGKTV-SSLKYFASTYA 342

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           E    +P T   S   G   L   +   + Q  +          ++    Q+  + DE+ 
Sbjct: 343 ELRKYKPATFFSSFQKG---LGNVKFDALYQFTQHP--------MQEFFHQIPLLKDELT 391

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             A+    +++   +    + L + L E +I +            +     L  G+  V 
Sbjct: 392 RYAKSNNTVVIQASSDVSLQTLQKNLQEYDIHLP-----------VHAADKLVEGQQQVT 440

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +    L  G  + +  LV I   +KE F +          +  R      I  A+ I   
Sbjct: 441 I--GQLASGFHLMDEKLVFI--TEKEIFNK----------KMKRKTRRTNISNAERIKDY 486

Query: 697 IQLAI 701
            +LA+
Sbjct: 487 SELAV 491



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+    GI    +I        PV+     T    + D +     +G 
Sbjct: 763 VLTLTATPIPRTLQMSMLGIRDLSVIETPPTNRYPVQTYVMETNPSVIRDAMLREIDRGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        Y+H ++  ++    +     G++D+LV   +
Sbjct: 823 QVYYLYNKVDTIEQKVSELKELVPEATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTI 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I +AD  G L +   L   +GR++R      I YA  + +  +   
Sbjct: 883 IETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSSR------IAYAYLMYRPDKSLT 935

Query: 702 DETTRRRE 709
           +   +R E
Sbjct: 936 EVAEKRLE 943


>gi|319757180|gb|ADV69122.1| transcription-repair coupling factor [Streptococcus suis JS14]
          Length = 1164

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 106/545 (19%), Positives = 209/545 (38%), Gaps = 66/545 (12%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I Q   G++   + QLLLG++G+ K+  MA   + +    +++   +  A +L ++    
Sbjct: 13  INQWQSGLNQSTR-QLLLGLSGTSKSLIMATAYDCLAEKIMIVTATQNDAEKLVADLTAI 71

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  F +           P  +     +     +ID +           +  +V S
Sbjct: 72  IGRENVYNFFTDDS--------PIAEFVFASKERTQSRIDSLNFLTDS---TSSGILVAS 120

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
            V+C   + S E+Y    +QL++G  +E  +L+ +LV   YK+    + +G F   GD +
Sbjct: 121 IVACRVLLPSPETYKGSKIQLEVGQEIEVDKLVKNLVNIGYKKVSRVLTQGEFSQRGDIL 180

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IF    E   +R+  FG++I+ I  F   + + + N++ I I   S  +      + A 
Sbjct: 181 DIFDMQSE-TPYRIEFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYSRAS 239

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           +YI+                +E   LE++ +Y  E+L    +     +  ++L+     E
Sbjct: 240 QYIQT--------------AIEQSTLEEQQSYLREVLADMQTEYRHPDLRKFLSCIY--E 283

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TL +Y+P+ S LF+D+ H    + +   +          + G  + S +      + 
Sbjct: 284 QSWTLLDYLPKSSPLFLDDFHKIADKQAQFEKEIADLLTDDLQKGKTV-SSLKYFASTYA 342

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           E    +P T   S   G   L   +   + Q  +          ++    Q+  + DE+ 
Sbjct: 343 ELRKYKPATFFSSFQKG---LGNVKFDALYQFTQHP--------MQEFFHQIPLLKDELT 391

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             A+    +++   +    + L + L E +I +            +     L  G+  V 
Sbjct: 392 RYAKSNNTVVIQASSDVSLQTLQKNLQEYDIHLP-----------VHAADKLVEGQQQVT 440

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +    L  G  + +  LV I   +KE F +          +  R      I  A+ I   
Sbjct: 441 I--GQLASGFHLMDEKLVFI--TEKEIFNK----------KMKRKTRRTNISNAERIKDY 486

Query: 697 IQLAI 701
            +LA+
Sbjct: 487 SELAV 491



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+    GI    +I        PV+     T    + D +     +G 
Sbjct: 763 VLTLTATPIPRTLQMSMLGIRDLSVIETPPTNRYPVQTYVMETNPSVIRDAMLREIDRGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        Y+H ++  ++    +     G++D+LV   +
Sbjct: 823 QVYYLYNKVDTIEQKVSELKELVPEATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTI 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I +AD  G L +   L   +GR++R      I YA  + +  +   
Sbjct: 883 IETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSSR------IAYAYLMYRPDKSLT 935

Query: 702 DETTRRRE 709
           +   +R E
Sbjct: 936 EVAEKRLE 943


>gi|317120949|ref|YP_004100952.1| transcription-repair coupling factor [Thermaerobacter marianensis
           DSM 12885]
 gi|315590929|gb|ADU50225.1| transcription-repair coupling factor [Thermaerobacter marianensis
           DSM 12885]
          Length = 1219

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 98/515 (19%), Positives = 183/515 (35%), Gaps = 49/515 (9%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q      L  G+      Q + G+ G      +A +  A  R   +   ++  A  L ++
Sbjct: 19  QLPEFPSLAGGVRRELPAQAVYGLAGPAAASLLAALAAATGRTLFIFTADQGAADALAAD 78

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            + + P   V  F             P  +    +  + + ++  +R  A   + +    
Sbjct: 79  LRAWAPAEQVVVF-------------PSIEVLPFEVLAASPELLALRLEALARIRQGPCL 125

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V    +    +   E ++  ++ L+ G  +++ ELL+ LV   Y+R +     G   V 
Sbjct: 126 VVAPVGAVARRLPRPERWAAGLIDLEPGRVLDRDELLARLVAAGYQRAEQVDRPGEVAVR 185

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++++P   E    R+  FG++I+ +  F P + +    +  +++      V   P  
Sbjct: 186 GGIVDVYPPAGE--PVRIEFFGDEIDSLRRFDPGSQRSTETLARVRLVPARELVLDGPAW 243

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++ +  E+  RL E  ++ R   A++L +R+  DL  LE        E Y  +    
Sbjct: 244 QQGLRALAGEI-ERLREQTRQRRGGAARQLLERLEQDLARLEAERPLDLAERYLPFFEPA 302

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                  TL +Y P  +L    E       ++   R    R+A L   G  LP+      
Sbjct: 303 M-----ATLLDYAPGPALAVWVEPRNLEEAVADRERQWQERQADLLSRGEILPAQASLYL 357

Query: 513 LRFEEWNCLRPT-TIVVS---ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
                W  L     + +S     PG       QG    Q+   T    P         Q 
Sbjct: 358 DEPGLWRALASRPVLYLSLLLRAPG-------QGPDPRQVYGITARPAPM-----FHGQW 405

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +   +E+    +Q  R+L+       AE L   L E ++  R +                
Sbjct: 406 DLFEEEVRTWKRQQYRVLVVAGDGERAERLRRALDEADVVARLVPGLTLPAP-------- 457

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                +VLV    L EG ++P    V + + +  G
Sbjct: 458 ----GEVLVAPAALSEGFEVPALRWVVLTEREVLG 488



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 7/174 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI     I        PV+          V D I    ++G 
Sbjct: 789 VLTLSATPIPRTLHMALAGIRDLSRIDTPPENRFPVQTFVVEWHESLVRDAIQRELRRGG 848

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  + +   L       R+   H ++   E   ++ D   GK DVLV   +
Sbjct: 849 QVFYVHNRVQSIQAVRRRLERLVPEARFAVAHGQMGEGELERVMVDFMAGKADVLVCTTI 908

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  GLD+P    + + DAD+ G  +    L Q  GR  R+       +     K
Sbjct: 909 IESGLDMPNVNTLIVEDADRFGLAQ----LYQLRGRVGRSDRVAYAYFTYRRDK 958



 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 49/131 (37%), Gaps = 14/131 (10%)

Query: 96  EQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPA 155
           ++++      L  L  +   L   G  + P   W           F+    Y  + DQ  
Sbjct: 596 KESVRELAGELLALYAARQTL--RGHAFGPDTPWQRQ--------FEDAFPYQETPDQLE 645

Query: 156 AIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAMQ--RPAIVMAPNKILAAQLYS 211
           AIA +   +       +LL+G  G GKT   M    +A+Q  +   V+ P  +LA Q   
Sbjct: 646 AIAAIKADMERPVPMDRLLVGDVGFGKTEVAMRAAFKAVQDGKQVAVLVPTTVLAYQHER 705

Query: 212 EFKNFFPHNAV 222
            FK  F    V
Sbjct: 706 TFKERFAPFPV 716


>gi|325288390|ref|YP_004264571.1| transcription-repair coupling factor [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324963791|gb|ADY54570.1| transcription-repair coupling factor [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 1182

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 99/528 (18%), Positives = 192/528 (36%), Gaps = 62/528 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + Q+   I  R+  Q++  ++GS KT   A +I+     ++++  +   A +  ++ + +
Sbjct: 14  LDQIQAAIEKRDSPQMIFHISGSMKTALAANLIKKKG-QSLILTFSDEQALKWINDLQTW 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P   + ++             P T+    +    + +    R    R+L E  + I+V+
Sbjct: 73  LPQRRILFY-------------PTTEWLPFEVLGRSRETTAERIRVLRALSEGGNEIIVA 119

Query: 277 SVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V  I   +   E + +  +Q+ +G +    EL+ +LV   Y RQ+I   RG F + G  
Sbjct: 120 PVQAIVRKLFCPEHWKKYSLQVAVGKTYPLDELIKTLVTVGYDRQEIVEARGQFALRGGI 179

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I P   E    R+  F  +++ I  F   T +         I+    YV         
Sbjct: 180 LDIAPLDCE--PVRIEFFDEEVDSIRTFDLETQKSSDARTEAWIFPVQEYVIKIEEQQEL 237

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              IK + +  +  L + G+    +RL  ++ Y  E L+     ++   +   L  +   
Sbjct: 238 KWEIKNKARKAVGRLLRLGKTEAVKRLHHKVEYLGERLDQGIMDENSYPFLSLLPIKF-- 295

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG--FRLPSCMDNRPL 513
               +L  ++ E +L+F+DE      Q+   +           E G  F  P   D   L
Sbjct: 296 ---VSLLGWLNEQALIFLDEPLRLKEQLDFQHSQRMEEYTANLEKGEEFVDP---DRLFL 349

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSART--QV 568
            FE              T  S E E+    +        GL    V     R      + 
Sbjct: 350 HFE--------------TIVSSEQEKTVVGMANLFREVPGLFPRRVHHINARPIAGYHKT 395

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI--RVRYMHSEVKTLERIEIIR 626
             + +EI   A  G  + L    +  A  L++ L +  +  ++R M  EV T        
Sbjct: 396 SMLVEEIKKMAATGNTVALFAGNQDQAGRLSQGLKDSGMENQIRGMEDEVATRG------ 449

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
                   + +    L +G ++P   L    +++     + +    Q 
Sbjct: 450 --------ISIFPWALDQGFELPAGKLAIFTESEIYRKEKRRQVKAQR 489



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 70/186 (37%), Gaps = 10/186 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L+     + +  +  T   D  PV+   A    + V D +     +G 
Sbjct: 776 VLTLSATPIPRTLQMSLVGLRDMSVISTPPDDRYPVQTFVAEFNPDMVRDAVRREIHRGG 835

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   L       +   +H ++   +    +      + D+L+   +
Sbjct: 836 QVFYVHNRIESLDRVLRMLKSLVPEAKCGVVHGQMNETQLENEMISFLEKEKDILICTTI 895

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+     + + +AD+ G  +    L Q  GR  R+       YA  + +  ++  
Sbjct: 896 IETGLDMANVNTLIVDEADRFGLSQ----LYQLRGRVGRSNRK---AYAYFLYQPSKILT 948

Query: 702 DETTRR 707
           +E  +R
Sbjct: 949 EEAEKR 954



 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 14/137 (10%)

Query: 90  QTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHP 149
           + +      +      L  L          G +++    W           F+ +  Y  
Sbjct: 577 KAKSRVRSAVKEMAIDLIELYAKRES--SKGYVFSADNHWQKE--------FEDKFPYEE 626

Query: 150 SGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKIL 205
           + DQ  +I ++ K  + S+   +LL G  G GKT   M    +A+   +   ++ P  IL
Sbjct: 627 TADQLQSIQEIKKDMMKSKVMDRLLCGDVGYGKTEVAMRAAFKAVADGKQVAILVPTTIL 686

Query: 206 AAQLYSEFKNFFPHNAV 222
           A Q Y+ F+  F    V
Sbjct: 687 AQQHYTTFQERFMDYPV 703


>gi|172056088|ref|YP_001812548.1| transcription-repair coupling factor [Exiguobacterium sibiricum
           255-15]
 gi|171988609|gb|ACB59531.1| transcription-repair coupling factor [Exiguobacterium sibiricum
           255-15]
          Length = 1171

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 90/521 (17%), Positives = 188/521 (36%), Gaps = 54/521 (10%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  + +        QL+ G+  SGK   +A + +  ++  +++  N   A +LY +    
Sbjct: 14  IKTVRERFRDGVNAQLITGLMNSGKALFIAGIYQETKKRFVIVTHNMFQAQKLYDDLIEL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES-SINEQIDRMRHSATRSLLERNDCIVV 275
            P   V  +             P  +T   + S   + ++   R      LL  +D I++
Sbjct: 74  VPEQDVMLY-------------PVDETLAAELSYGASPELRATRIETRHRLLTTDDGILI 120

Query: 276 SSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
             +  +   + +   +     ++K GD +   + +  LV   Y+R       G F V G 
Sbjct: 121 IPLVGLRRYVPTASDFLDHTKRIKPGDVLSIPDFIQELVDAGYERTATVTTPGEFAVRGS 180

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I+++P  +E   +R+ +F  +++ I  F   T + +  +    +   + +   R  L T
Sbjct: 181 IIDLYPLTVE-RPYRLDLFDEEVDSIYTFDAETQRSLGVIAEALVPPATEHFATREGLKT 239

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A   ++         ++    L     LE+ I YD+E+LE     + +  Y+  L     
Sbjct: 240 AGDKLRRLYDATKERVQSTEVLAA---LEEGIAYDVEVLEGGDRPKQLAKYAPLLYE--- 293

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
                TL + I +D++L VDE              +    A+L E G  +     + P+ 
Sbjct: 294 ----TTLLDDI-KDAVLIVDEVARIEEAAEVQDTEEAEWMASLIERGQSVSDYTLSVPM- 347

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
              +       + +S  P               +     +      I     Q+E +  E
Sbjct: 348 LNVFKQR--QLLYLSLLP----------TRRSGVPESAAIHFSIKPIAPFHGQMERLKQE 395

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++   +  + ++     +  AE + + L +  +      +E           ++R G   
Sbjct: 396 VDRYGRADMWMVFLASNRERAERMRQTLSDYGVEASLHTTE----------DEIRRGHPS 445

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +L+    +  G ++    LV I   ++E F +      QT 
Sbjct: 446 ILI--GGIHGGFEMTNARLVVI--TEEEVFKQPARRRKQTT 482



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 61/183 (33%), Gaps = 11/183 (6%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     GI    ++        PV+  +      V  + + +     +
Sbjct: 770 VLTLTATPIPRTLHMSMIGIRDLSVLETPPENRYPVQTYVMEYDGIV--MREALERELGR 827

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +           E   E +       R +  H  +   E    +     G  DVLV  
Sbjct: 828 GGQAFFLYNRVEGIERKAEEIRALVPEARVVTAHGRMTETELESQLIAFFEGDADVLVST 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + + DAD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 888 TIIETGIDIPNVNTLIVNDADQMGLSQ----LYQLRGRVGRSSRVAYSYFTYRPQKRLTE 943

Query: 700 AID 702
             +
Sbjct: 944 VAE 946



 Score = 37.8 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 6/125 (4%)

Query: 99  MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIA 158
           +   VQ     I   + L+K          ++          F+    Y  + DQ  +I 
Sbjct: 572 VKAKVQKSVEDIA--DELIKLYAAREAAVGFAFPEDDDSTQAFEASFPYEETVDQLRSIE 629

Query: 159 QLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFK 214
           ++ K +   R   +LL G  G GKT   +    +A+   +   ++ P  +LA Q Y    
Sbjct: 630 EIKKDMERPRPMDRLLCGDVGYGKTEVAIRAAFKAVMAGKQVALLVPTTVLAQQHYETML 689

Query: 215 NFFPH 219
             F  
Sbjct: 690 ERFSD 694


>gi|219666201|ref|YP_002456636.1| transcription-repair coupling factor [Desulfitobacterium hafniense
           DCB-2]
 gi|219536461|gb|ACL18200.1| transcription-repair coupling factor [Desulfitobacterium hafniense
           DCB-2]
          Length = 1197

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 103/510 (20%), Positives = 199/510 (39%), Gaps = 49/510 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  + K I  +E  Q++  +TGS K    A++I+   +P +++  ++ LA +  ++ +++
Sbjct: 33  IEAVDKAISYKEWPQMIYNLTGSQKPAFAAQLIQK-GKPGLIITYSEELAQKWVNDLRSW 91

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P   V YF S  ++   E      +T IE            R      L + N C VV 
Sbjct: 92  LPGEDVLYFPSS-EWLPFEVLGKSRETTIE------------RIRVLNRLAQDNQCTVVV 138

Query: 277 SVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
               +     S   + + I++LK G S + K+L   L    Y+R D+   +G F + G  
Sbjct: 139 PALAVNQRSFSRRRWQEYILELKEGTSYDLKDLAQKLSTAGYERLDVVDGKGQFAIRGGI 198

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I P   E    RV  F ++++ I  F   T +    ++++KI      V     L   
Sbjct: 199 MDIAPLDGE--PLRVEFFDDEVDSIRVFDLETQKSTETLKSVKIPPALEVVIRPEELEKL 256

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              ++ + + +   L + GR   A+++ ++     E L+T    +SI  Y   L    P 
Sbjct: 257 GWEVRAQARKQAGRLNRSGRSDVAEQVMKQAQRIEERLKTGRVDESIYPYLSLL--EEPL 314

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           EP  +L     +D  + +DE      Q+    +            G    S  D + + +
Sbjct: 315 EPFFSLL---SQDHYVILDEPLRLKEQLEFQQKERLEEYTQALAKGEEFYSPED-QFVSY 370

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS---ARTQVEDVY 572
           E++         V  +    E+           + P  + +     R       +   + 
Sbjct: 371 EQFLRYGEKHPFVLISTLPREIPG---------VAPKRIFNLNA--RPLTGFMGKTGILV 419

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEI    + G  + L V  +  AE + + L +R    +          + E+   ++ G 
Sbjct: 420 DEIEHWQKSGHIVNLFVGDEEHAERMLQGLRDRGALAK----------KHELHEPVQEGG 469

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKE 662
             V V  + L +G ++P   L+ + +A+  
Sbjct: 470 --VYVYSSSLDQGFELPLSKLIVLSEAEIY 497



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 70/187 (37%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     G+    II        PV+   A  + + V + I    Q+G 
Sbjct: 798 VLTLSATPIPRTLHMSLVGVRDLSIIETPPEDRFPVQTYVAEFRPDVVREAIRREIQRGG 857

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E +  +L +     RY   H ++   E  + +      + DVLV   +
Sbjct: 858 QVFFVHNRVEDMEQVVHFLSQLVPEARYGIAHGQMSEKELEQEMLAFLEHESDVLVCTTI 917

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+P    + I +AD+ G  +    L Q  GR  R+       +        Q  +
Sbjct: 918 IETGLDMPNVNTLIIDEADRLGLGQ----LYQLRGRVGRSNRRAYSYFLYKP----QKVL 969

Query: 702 DETTRRR 708
            E   +R
Sbjct: 970 TEVAEKR 976


>gi|314932725|ref|ZP_07840095.1| transcription-repair coupling factor [Staphylococcus caprae C87]
 gi|313654555|gb|EFS18307.1| transcription-repair coupling factor [Staphylococcus caprae C87]
          Length = 1169

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 86/499 (17%), Positives = 187/499 (37%), Gaps = 62/499 (12%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +K  L+ G++ S K   +A+     Q+  +++  N   A ++ ++   +   + V  + 
Sbjct: 23  GQKNILVTGLSPSAKATIIAEKYLKDQKQLLLVTNNLYQADKIETDLLQYVDGSEVYKY- 81

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L +    + +  ++     + 
Sbjct: 82  ------------PVQDIMTEEFSTQSPQLMSERVRTLTALAQGQRGLFIVPLNGFKKWLT 129

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            V+ +    + LK+G+ ++ +  L+ LV   Y+R+ +    G F + G  I+I+P     
Sbjct: 130 PVDMWKNHQMTLKVGEDIDVEAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIGS- 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +++ I +F   T +   N++ + I   S Y+     +     ++KE  + 
Sbjct: 189 -PVRIELFDTEVDSIRDFDVETQRSNENLDEVDITTASDYIITDEVIQYLQTHLKEAYEH 247

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              ++EK  R       E+ +L +   +D ++L    +                 E P T
Sbjct: 248 TRPKIEKSVRNDLKETYESFKLFESTFFDHQLLRRLVAFMY--------------EQPST 293

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y  +D+++ VDE +        +        + L E G         +   FE    
Sbjct: 294 IIDYFRDDAVIAVDEFNRVKETEETLTTEVDDFISNLIESGNGFIGQSFMKYDGFETLLE 353

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            +P       T           + ++ II+ +        ++    Q + +  E      
Sbjct: 354 KKPVAYFTLFT-------SSMQVPLQHIIKFSCKP-----VQQFYGQYDIMRSEFQRYVH 401

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               I++ + T+   E +   L E +I  V ++H +V +                 +V  
Sbjct: 402 NDYTIMVLMETETKVERIQSMLNEMHIPTVSHIHEKVDS--------------GQAIVTE 447

Query: 640 NLLREGLDIPECGLVAILD 658
             L EG ++P   LV I +
Sbjct: 448 GSLSEGFELPYMQLVVITE 466



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 66/184 (35%), Gaps = 11/184 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +  
Sbjct: 770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDG 829

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + E NI V   H ++   +  E +      ++D+LV  
Sbjct: 830 QVFYLYNKVQSIYEKREQLQMLMPEANIAVA--HGQMTERDLEETMLSFINHEYDILVTT 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I +AD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 888 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPANKVLNE 943

Query: 700 AIDE 703
             +E
Sbjct: 944 TAEE 947


>gi|257871350|ref|ZP_05651003.1| transcription-repair coupling factor [Enterococcus gallinarum EG2]
 gi|257805514|gb|EEV34336.1| transcription-repair coupling factor [Enterococcus gallinarum EG2]
          Length = 1173

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 88/531 (16%), Positives = 185/531 (34%), Gaps = 66/531 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q AA  Q    +      QLL G+ GS KT   A   +   R  IV+ PN     Q+  +
Sbjct: 12  QVAAWHQ---QLTDHASRQLLTGLAGSAKTLAFAGAYQKFDRQVIVVTPNLYYTNQVAED 68

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            +N      V                P  +    + +  + +    R +A  ++      
Sbjct: 69  LRNIIDDVYV---------------FPVDEVLSAEMAFASPEARAERVTALNAVATGKKG 113

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           I V  ++ +   + + +++        +GD +   +L   LV   Y+RQ +    G F +
Sbjct: 114 IYVMPIAALRKYLPAKDTWLNYQFSWHVGDEINLDQLPQQLVLMGYERQSMIGKPGEFSI 173

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++I+P   E    R+ +F  +I+ +  F   T + +  +  + I   +  V     
Sbjct: 174 RGSILDIYPLKAE-YPVRIELFDVEIDSMRSFDVETQRSVETLSEVTIVPTTELVFSPAD 232

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           L    K ++E LK RL  +++         LE          ++    ++   Y+  L  
Sbjct: 233 LAHGQKVLQELLKKRLAVVKETTD---KNFLEDYFGQLASAWQSGIPDENARYYADLLY- 288

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               + P ++ +Y  +D+LL +D+    +     + R +                  + R
Sbjct: 289 ----QQPTSILDYFSKDALLMIDDYARIMETNREIEREEAEWHTQKI---------AELR 335

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE----IRSAR-- 565
               + +       I         + EQ          +  G +          R  +  
Sbjct: 336 VFSEQSFGQDVQQLI---------QKEQFSTSFFSLFQKGMGNLRFQAIHNFQYRPMQQF 386

Query: 566 -TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
            +Q+  +  E++   +Q   ++  V     A+ L +   + +I      ++         
Sbjct: 387 FSQMGLLKVEVDRWEKQQQTVVFLVSDSERAKKLEQDFRDHSIYAVQTTAD--------- 437

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
              L  G+  ++V    L+ G ++P+  LV + + +    +  K +  Q +
Sbjct: 438 --RLFTGRTQIVVET--LQSGFEMPQDKLVIVTEKEIFQKINKKRTRRQNV 484



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 75/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          V 
Sbjct: 759 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMEMNPGAVR 818

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +G ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 819 EAILREMARGGQVFYLYNRVDTIERKVEELQALVPDARIGYAHGQMTEIQLENTLFDFIE 878

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++DVLV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 879 GQYDVLVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 934

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 935 YEQ----QKILNEVSEKRLQAIK 953


>gi|289606530|emb|CBI61152.1| unnamed protein product [Sordaria macrospora]
          Length = 165

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 106/166 (63%), Positives = 130/166 (78%), Gaps = 1/166 (0%)

Query: 106 LARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH 165
           +A +I++D    + G+ + PHR    +        F ++++Y P+GDQP AIA+L+    
Sbjct: 1   MAIMIRTDLSEPETGQTFIPHRPARPDKVDAG-KRFVIKSEYQPAGDQPTAIAELVAAAK 59

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           + EK Q+LLGVTGSGKTFTMAK IE +QRPA+++APNKILAAQLY E K+FFP NAVEYF
Sbjct: 60  AGEKDQVLLGVTGSGKTFTMAKTIEELQRPALILAPNKILAAQLYGEMKSFFPDNAVEYF 119

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           VSYYDYYQPEAYVPR+DTYIEKESS NE IDRMRHSATRSLLER+D
Sbjct: 120 VSYYDYYQPEAYVPRSDTYIEKESSTNEAIDRMRHSATRSLLERDD 165


>gi|227544685|ref|ZP_03974734.1| transcription-repair coupling factor [Lactobacillus reuteri
           CF48-3A]
 gi|300909073|ref|ZP_07126536.1| transcription-repair coupling factor [Lactobacillus reuteri SD2112]
 gi|227185331|gb|EEI65402.1| transcription-repair coupling factor [Lactobacillus reuteri
           CF48-3A]
 gi|300894480|gb|EFK87838.1| transcription-repair coupling factor [Lactobacillus reuteri SD2112]
          Length = 1179

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 89/530 (16%), Positives = 202/530 (38%), Gaps = 46/530 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            +  Q+   +  +   QL+ G++GS +T  ++ + +  QRP +V+        +L S+ +
Sbjct: 12  PSFKQITADLQPK-NHQLITGISGSVRTELLSALSKEGQRPILVVTDTISHMQELASDLE 70

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           N  P N V  F             P  +    + ++ +      R  A  +L+     +V
Sbjct: 71  NLLPANRVYQF-------------PVEEVLAAEVATSSPNYRLQRVLALNALINNEPAVV 117

Query: 275 VSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           ++S + +   I S E ++Q  +++K G  V+  ++   L    Y+ Q + +  G F + G
Sbjct: 118 IASAAGLRRNIISPEYFAQSSLKIKTGGEVDPAKIRQQLSAMGYQYQKMVLRPGDFAIRG 177

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+I+ +   D   R+ +F  +++ +  F   T + I NVE ++I   + ++ P    +
Sbjct: 178 SIIDIY-ALNTDNPVRIDLFDTEVDSLRYFDASTQRSIDNVEEVQILPATDFIIPSTEFS 236

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
              + +  E K    EL  +   +  Q++       L  L+       +  +S  +    
Sbjct: 237 RVYEALDTEYKKVEKELSADDTDI-KQQVANLFEPLLNALKNQHLPNELLEFSNLVYPAK 295

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
                 +LF+Y+P+D  ++ D+          M + D         +       + + P 
Sbjct: 296 -----HSLFDYLPDDGTIYFDDLTRIKQFAKQMTKEDAGWFKDKVAH-----HQLTDVPD 345

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
              + + +          P  +     +G+   ++ + T L      ++    Q+  +  
Sbjct: 346 LSNDVSAIIKKDPH----PQIYGALFKKGLGNIKLSQITDLKSR--TMQRFFGQMPLLKA 399

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E      QG  ++L   +    + + + L + +I                 + +++    
Sbjct: 400 EFQRWVDQGQTVVLMANSPERRKQIAQTLADFDITAT-----------ETELTNIKPNVV 448

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            ++     L  G ++P  GLV I +++    ++      Q +  A R  N
Sbjct: 449 QIV--AANLNYGFEMPLAGLVVITESEMFKQVKKVHHRPQKLANAERLKN 496



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 7/174 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          + D I    Q+G 
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVLETPPAGRYPIQTYVMEQNSSAIRDGIIREMQRGG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E+   +L E     R  Y++ ++   E   ++ +   G +D+LV  ++
Sbjct: 834 QVYYLHNRVHDIEETVAWLQELVPEARIGYINGQMSENELETVLYEFIQGNYDILVTTSI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  G+DIP    + + +AD+ G  +    L Q  GR  R+       +     K
Sbjct: 894 IETGVDIPNANTLFVENADRMGLAQ----LYQIRGRIGRSNRVAYAYFMYQPNK 943


>gi|89892935|ref|YP_516422.1| hypothetical protein DSY0189 [Desulfitobacterium hafniense Y51]
 gi|89332383|dbj|BAE81978.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1178

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 102/510 (20%), Positives = 199/510 (39%), Gaps = 49/510 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  + K +  +E  Q++  +TGS K    A++I+   +P +++  ++ LA +  ++ +++
Sbjct: 14  IEAVDKAVSYKEWPQMIYNLTGSQKPAFAAQLIQK-GKPGLIITYSEELAQKWVNDLRSW 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P   V YF S  ++   E      +T IE            R      L + N C VV 
Sbjct: 73  LPGEDVLYFPSS-EWLPFEVLGKSRETTIE------------RIRVLNRLAQDNQCTVVV 119

Query: 277 SVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
               +     S   + + I++LK G S + K+L   L    Y+R D+   +G F + G  
Sbjct: 120 PALAVNQRSFSRRRWQEYILELKEGTSYDLKDLAQKLSTAGYERLDVVDGKGQFAIRGGI 179

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I P   E    RV  F ++++ I  F   T +    ++++KI      V     L   
Sbjct: 180 MDIAPLDGE--PLRVEFFDDEVDSIRVFDLETQKSTETLKSVKIPPALEVVIRPEELEKL 237

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              ++ + + +   L + GR   A+++ ++     E L+T    +SI  Y   L    P 
Sbjct: 238 GWEVRAQARKQAGRLNRSGRSDVAEQVMKQAQRIEERLKTGRVDESIYPYLSLL--EEPL 295

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           EP  +L     +D  + +DE      Q+    +            G    S  D + + +
Sbjct: 296 EPFFSLL---SQDHYVILDEPLRLKEQLEFQQKERLEEYTQALAKGEEFYSPED-QFVSY 351

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS---ARTQVEDVY 572
           E++         V  +    E+           + P  + +     R       +   + 
Sbjct: 352 EQFLRYGEKHPFVLISTLPREIPG---------VAPKRIFNLNA--RPLTGFMGKTGILV 400

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEI    + G  + L V  +  AE + + L +R    +          + E+   ++ G 
Sbjct: 401 DEIEHWQKSGHIVNLFVGDEEHAERMLQGLRDRGALAK----------KHELHEPVQEGG 450

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKE 662
             V V  + L +G ++P   L+ + +A+  
Sbjct: 451 --VYVYSSSLDQGFELPLSKLIVLSEAEIY 478



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 70/187 (37%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     G+    II        PV+   A  + + V + I    Q+G 
Sbjct: 779 VLTLSATPIPRTLHMSLVGVRDLSIIETPPEDRFPVQTYVAEFRPDVVREAIRREIQRGG 838

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E +  +L +     RY   H ++   E  + +      + DVLV   +
Sbjct: 839 QVFFVHNRVEDMEQVVHFLSQLVPEARYGIAHGQMSEKELEQEMLAFLEHESDVLVCTTI 898

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+P    + I +AD+ G  +    L Q  GR  R+       +        Q  +
Sbjct: 899 IETGLDMPNVNTLIIDEADRLGLGQ----LYQLRGRVGRSNRRAYSYFLYKP----QKVL 950

Query: 702 DETTRRR 708
            E   +R
Sbjct: 951 TEVAEKR 957


>gi|213584872|ref|ZP_03366698.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 159

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 96/156 (61%), Positives = 122/156 (78%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
             F++ + + PSGDQP AI +L +G+      Q LLGVTGSGKTFT+A VI  +QRP +V
Sbjct: 3   KPFKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +APNK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++S+NE I++M
Sbjct: 63  LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           R SAT++LLER D +VV+SVS IYG+G  + Y +M+
Sbjct: 123 RLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMM 158


>gi|218513868|ref|ZP_03510708.1| transcription-repair coupling factor [Rhizobium etli 8C-3]
          Length = 411

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 65/341 (19%), Positives = 134/341 (39%), Gaps = 23/341 (6%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + + +  +  +   QL+ G+ GS KT   A+  +   +  I++ PN   A QL  + ++ 
Sbjct: 13  VKEWVSNLEEKMPRQLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQHV 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P + +  F             P  +    + +  + +    R +   +L E+   I + 
Sbjct: 73  IPQDQIHLF-------------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIYLL 119

Query: 277 SVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   + + +++ Q  +   IGD ++ + L   L    Y R+++    G F + G  
Sbjct: 120 PVASLHKRLPNKKTWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRGSI 179

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P        RV +F  +I+ +  F   T + I   E I +   S  V     L   
Sbjct: 180 IDIYPLTT-TYPVRVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLEHG 238

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ +++ L+ RL    +E      + L+          +     +  + YS  L      
Sbjct: 239 IEQMQKMLEKRLAATTEEAD---REFLQDYFGQLTSSWQAGVPTEEAKFYSDLLY----- 290

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           +   T+ +Y P +SLL VD+    +     + R     +  
Sbjct: 291 QESVTILDYFPSNSLLVVDDYQRIMETNREIEREAAEWQTQ 331


>gi|289422646|ref|ZP_06424487.1| transcription-repair coupling factor [Peptostreptococcus anaerobius
           653-L]
 gi|289156946|gb|EFD05570.1| transcription-repair coupling factor [Peptostreptococcus anaerobius
           653-L]
          Length = 1133

 Score =  203 bits (517), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 87/507 (17%), Positives = 185/507 (36%), Gaps = 57/507 (11%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             +L  I     +Q + G+T +GK      + + + R  + +A  +  A + Y E   + 
Sbjct: 16  NDILDSIGQDGNIQ-ITGLTWAGKQNLAYSLFKDLSRQVLYVASTEYEAKKAYEELSVYL 74

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
                             +Y+   +       + + ++D  R      L+ ++  + V+S
Sbjct: 75  KDKV--------------SYLGSNEILFYNLDARDRKVDARRLKVFIKLINKDKSVFVTS 120

Query: 278 VSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           V  +       +  +    +LK+G +   +EL   LV   Y+R       G F V G  +
Sbjct: 121 VDALTRKYMPKKLITDNTFKLKVGRTQGIQELTQKLVDLGYQRVVKVEGFGQFSVRGGIV 180

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IF     D   R+  F ++I+ I EF   + + I   +++ I  +  ++ P+  +  A+
Sbjct: 181 DIFTLMY-DFPLRIEFFDDEIDSIREFDVYSQKSIDKKKSVTITPSRDFIYPKD-VTGAI 238

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           + IK E++        +  L   + L        E +E       +ENY  YL      +
Sbjct: 239 EKIKSEIR-------DDTDLDVHKNL--------ERIENREYFDGLENYIDYLY----DD 279

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              +LFEY+ +D+L++VD+ +    +   +            E G  + S         +
Sbjct: 280 QDKSLFEYLAKDALIYVDDFNRYKERFKNVSNEYRDLYLLNLERGVAIKSQGSMLYSMED 339

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            +  ++   ++V                +  +     +     +I S   +++ + ++I 
Sbjct: 340 VYYWMQDRKLIV---------NTHLAKAISDMNMVHNISIECRDIPSYNGKIDLLVEDIK 390

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G +I++   TK  A+ +   L +  +   Y  S           R+  +    ++
Sbjct: 391 RLRHSGYKIIIAAATKDRAKKINAMLNDNGVESFYSDS-----------RNTEIKTSQIM 439

Query: 637 VGINLLREGLDIPECGLVAILDADKEG 663
           V    +  G   P      I D +  G
Sbjct: 440 VMGVNISHGFLYPSIKYQLITDREMLG 466



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 69/194 (35%), Gaps = 15/194 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI    II        PV       +   + DEI     +G 
Sbjct: 767 VLTLSATPIPRTLHMSLSGIRDMSIIEEPPQERYPVMTYVTEAKESIIQDEIYRELARGG 826

Query: 584 RILLTVLTKRMAEDLT----EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E +     + + E NI V   H  + + +    +      +FDVLV  
Sbjct: 827 QVFFVYNRVEGIETIASKIKKLVPEANIGVA--HGRMTSSQLENTVLSFLSKEFDVLVCT 884

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I DADK G  +    L Q  GR  R+                  
Sbjct: 885 TIIETGMDIANANTMIIYDADKMGLSQ----LYQLRGRVGRSNKQGYAYLMY----ERNK 936

Query: 700 AIDETTRRREKQLE 713
            I E + +R K ++
Sbjct: 937 VISEVSEKRLKAIK 950



 Score = 39.3 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 86/251 (34%), Gaps = 50/251 (19%)

Query: 121 KIWTPHRSWSINNHSKDI---TFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGV 176
           ++++   S     +SKD    T F+ +  Y  + DQ  AI +  K + S++   +L+ G 
Sbjct: 586 ELYSKRESRKGYKYSKDTIWQTEFEEKFPYQETDDQLKAIKETKKDMESQKAMDRLICGD 645

Query: 177 TGSGKT-FTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPH--NAVEYFVSYYDY 231
            G GKT   +  + +A+   +   V+ P  ILA Q ++ F   F      VE    +   
Sbjct: 646 VGYGKTEVAIRAIFKAVMDNKQVAVLVPTTILAQQHFNTFTERFEDYPIRVEVLSRFKTP 705

Query: 232 YQPEAYVPRT-----DTYIEKESSINEQIDRMRH----------------SATRSLLERN 270
            Q    +        D  I     +++ I   R                  A + L    
Sbjct: 706 KQQREIIADAKKGLVDVLIGTHRIVSKDIAMPRLGLIVVDEEQRFGVKHKEALKKLRVDV 765

Query: 271 DC----------IVVSSVSCIYGIG----SVESYSQ-MIVQLKIGDSVEQKELLSSLVKQ 315
           D            +  S+S I  +       +     M    +  +S+ Q E+   L + 
Sbjct: 766 DVLTLSATPIPRTLHMSLSGIRDMSIIEEPPQERYPVMTYVTEAKESIIQDEIYRELARG 825

Query: 316 Q-----YKRQD 321
                 Y R +
Sbjct: 826 GQVFFVYNRVE 836


>gi|3511015|gb|AAD03810.1| transcription-repair coupling factor [Lactobacillus sakei]
          Length = 1045

 Score =  203 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 83/527 (15%), Positives = 191/527 (36%), Gaps = 48/527 (9%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
             +  +L+      + QLL G++GS KT  +A + +  ++P +++  N   A Q+  +  
Sbjct: 11  QQVQSVLENQKPGVR-QLLTGLSGSAKTLFLATIYKQQRQPLLIIESNMFQANQVAEDLA 69

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           N    + +  F             P  +    + +  + +    R      L      IV
Sbjct: 70  NQLNGDQIYTF-------------PVEEVMAAEIAVSSPESRAERVRTLSFLATGKKGIV 116

Query: 275 VSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+SV+ +  +   V  +     Q+++G  V+ K L + L +  Y R  +    G F + G
Sbjct: 117 VTSVAGMRRLLPTVRQWRDSQTQIEMGGEVDPKILGAQLAEMGYHRDKLVGKPGEFAMRG 176

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D I+IFP   E+   R+ +F  +++ I  F   T + I N+E++ I   +  +     L 
Sbjct: 177 DIIDIFPLDTEN-PVRIELFDTEVDAIRSFEADTQRSIENLESVAIMPATDLLANAAQLE 235

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A + ++ + +    ++  +          +        +    + + +EN + ++    
Sbjct: 236 MAGEALQADYQQTAAKITAKDDQKALAVNFET------PISRLLAGERLENLALFVDYLY 289

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
           P     +L +Y     L+  D+          +     + +  +      LP+      +
Sbjct: 290 PDHT--SLIDYFKNSGLVVFDDYPRIQETQRVLAEEAANWQTDMLGSRRLLPAQKLLVDV 347

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
                    P   +     G  +L+     +     R          ++   +Q+  +  
Sbjct: 348 HHLMKQDQHPHLYLSLFQKGMGKLKL--DTLGNMPTRN---------VQQFFSQMPLLKT 396

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E++   +Q   +++ V   +  + + +  ++  I              +     L  G+ 
Sbjct: 397 EMSRWQKQQQTVVVLVSDAKRVKKIDQTFHDFEIEAT-----------VTTKTKLVAGQI 445

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            ++     L+ G ++P+  LV + + +       K    QT+  A R
Sbjct: 446 QIV--QGSLQNGFELPDLKLVVLTEKELFNTAPKKKVRRQTLANAER 490



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 6/183 (3%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     G+    +I        P++          + 
Sbjct: 760 ERLKQLKAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPIQTYVMEQNAGAMR 819

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRL 630
           + I    ++  ++          E   + +        V Y H ++   +   +I D   
Sbjct: 820 EAIERELERNGQVFYLHNRVSDIEQTVDEIQALVPEATVGYAHGQMTEAQLEGVIYDFVQ 879

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           GK+DVLV   ++  G+D+P    + + DAD  G L     L   IGR++R      +   
Sbjct: 880 GKYDVLVTTTIIETGVDMPNVNTMIVEDADHYG-LSQLYQLRGRIGRSSRVAYGYFMYKP 938

Query: 691 DTI 693
           D +
Sbjct: 939 DKV 941


>gi|224475645|ref|YP_002633251.1| putative transcription-repair coupling factor [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222420252|emb|CAL27066.1| putative transcription-repair coupling factor [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 1172

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 104/625 (16%), Positives = 217/625 (34%), Gaps = 66/625 (10%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            ++  L+ G++G+ K   MA+   +  RP +V+  N   A +L ++ + +   + +  + 
Sbjct: 23  GQENVLVTGLSGAVKATMMAEKYLSSDRPLVVVTNNLYQADKLEADIQQYINDDEIYKY- 81

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
                       P  D   E+ S+ + Q+   R      L E      +  ++ +  + +
Sbjct: 82  ------------PLQDIMTEEFSTQSPQLMSERVRTLTGLAEGQRGFFIIPLNGLKKLQT 129

Query: 287 VES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
               +    ++L +GD ++  + L+ LV   Y+R+      G F + G  I+I+P     
Sbjct: 130 PVDIWQSHQLKLSVGDDIDVDDFLNKLVDMGYRRETAVSHIGEFSLRGGIIDIYPLIG-- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +++ I +F   + +   N ET++I + S Y+     L      +KE  + 
Sbjct: 188 APVRIELFDTEVDSIRQFDIESQRSEENQETVEITSASDYIITDDVLKRIKTQLKEAYEN 247

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
              +++K  R       E  + +D   ++     Q I     ++      E P TL +YI
Sbjct: 248 TRPKIDKSVRNDVKDTYESFLQFDSNFVD----HQVIRRLVTFMY-----EQPATLVDYI 298

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
             ++++ VDE +        +          L E G             FEE    R  T
Sbjct: 299 SNNAIIAVDEYNRVKDTEETLTTEVNDFMTQLIESGKGFIGQQFMNDKAFEELINTRNIT 358

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
                T           + +  II+ +        ++    Q + +  E       G  +
Sbjct: 359 YFTLFT-------TSMPVKLNNIIKFSSKP-----VQQFYGQYDIMRSEFQRYVNNGYTV 406

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+   E +   + E +I V                  +  G    ++    L EG
Sbjct: 407 VVLVETETKKERVKSMMNEMHIPV----------VEGTAGEHMEGG--HAVIVEGSLSEG 454

Query: 646 LDIPECGLVAILDADKE-GFLRSKTSLIQTIG---RAARNVNSKVILYADTITKSIQLAI 701
            ++P   L  + + +      +      QT+    R     + K+  Y   +   +   +
Sbjct: 455 FELPYMQLAVVTERELFKSKQKKAKKRTQTMSNAERIKSYQDLKIGDYVVHVHHGVGRYL 514

Query: 702 D-ETTR-----RREKQLEHN-KKHNINP----QSVKEKIMEVIDPILLEDAATTNISIDA 750
             ET       R   ++++        P      V++ +        L     T      
Sbjct: 515 GVETLEVGDVHRDYIKIQYKGTDQLFVPVDQMDQVQKYVASEDKTPRLNKLGGTEWKKTK 574

Query: 751 QQLSLSKKKGKAHLKSL--RKQMHL 773
            ++  S +     L  L   ++M  
Sbjct: 575 AKVQQSVEDIADELIELYREREMAQ 599



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 11/184 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +G 
Sbjct: 771 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRGG 830

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +        +      E L   + E NI V   H  +   E  + +     G++D+LV  
Sbjct: 831 QAFYLYNKVQSIYEKKEQLQMLMPEANIGVA--HGRMTERELEDTMIGFVDGEYDILVTT 888

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 889 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRVGYAYFLHPTNKVLSE 944

Query: 700 AIDE 703
             +E
Sbjct: 945 TAEE 948


>gi|238917833|ref|YP_002931350.1| transcription-repair coupling factor (superfamily II helicase)
           [Eubacterium eligens ATCC 27750]
 gi|238873193|gb|ACR72903.1| transcription-repair coupling factor (superfamily II helicase)
           [Eubacterium eligens ATCC 27750]
          Length = 1206

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 89/521 (17%), Positives = 187/521 (35%), Gaps = 49/521 (9%)

Query: 157 IAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           + QL K +     +  ++ G   + K    + +        +V+  ++  A  +  + + 
Sbjct: 14  VEQLNKELAKDGGRTVMVSGCIDTQKLHFSSAIASNYN-FQLVITSDEGKARDMAEDARF 72

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS---------ATRSL 266
           F   N + Y      +Y   A V       E+   I   IDR+  S         +T   
Sbjct: 73  FNGGNVMYYPAKDVIFY--NADVQGRQIAGERIRCIAAIIDRLNKSDIVKSGTEKSTEEA 130

Query: 267 LERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
            +    IV +       +  V+ + + ++ LK GD ++ +++   L    ++R  +   +
Sbjct: 131 SDGPLTIVTTIDGISDMLLPVDRFKRAVINLKKGDILDVEDMAKKLTAMGFERFGMVEAK 190

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           G F + G  I+IF S+ ++   R+ ++ ++I+ I  F   + + I N ++  ++  + ++
Sbjct: 191 GQFAIRGGIIDIF-SYTDEAPVRIELWDDEIDSIRAFDADSQRSIENYKSYTVFPATEFL 249

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
                +   ++ I+ E   ++     + R    +R +++I     +           +YS
Sbjct: 250 FTEDEIEQGIEKIRHEKDEQMKLFGADKR----KRTKEQIEAGNHLNRMFDDALRTGDYS 305

Query: 447 RYLTGRNPGEPPPTLFEYIPE-DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505
           +++      +   +L EY P+ D+L+ VDE           +           E G+ LP
Sbjct: 306 KFIYTFA--DRVSSLAEYFPKGDTLIVVDEPVRLKEHSDMTFYEYSESMKNRLESGYVLP 363

Query: 506 SCMDNRPLRFEEWNCLRPTTIVVSA----TPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           S              +     +V      TP  + ++    I    I             
Sbjct: 364 SQTHMFMDMETAVLSMNGHKQLVLTTLEYTPEFFGIDYSMHIEARSIS------------ 411

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            S     E + D+I    +    +LL   ++  A  + + L    I   Y     K++  
Sbjct: 412 -SYNNSFEYLSDDIRKYKRNKYAVLLVCSSRTRANRIVDDLGRLGIESFYTEDSNKSM-- 468

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
                    G   V+V    L  G + P  G V I + D  
Sbjct: 469 --------AGGL-VMVTYGSLHRGFEYPLQGFVCIAENDIF 500



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 73/178 (41%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI    ++    +   P++        E + + I     +  
Sbjct: 799 VLTLSATPIPRTLHMSLAGIRDMSVLEEPPVDRVPIQTFVTEHNDEMIREAITRELARNG 858

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       R  ++   ++ E   +  V Y H ++   E  +I+ D   G+ DVLV   +
Sbjct: 859 QVYYVYNRVRSIDEAAAHIQELVPDANVAYAHGQMAKRELEKIMCDFVNGEIDVLVSTTI 918

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DI  C  + I DAD+ G L     L   +GR++R   + ++   D +   +  
Sbjct: 919 IETGMDISNCNTMIIEDADRFG-LSQLYQLRGRVGRSSRTAYAFLLYRRDKVLTEVAE 975


>gi|323490992|ref|ZP_08096186.1| transcription-repair coupling factor [Planococcus donghaensis
           MPA1U2]
 gi|323395348|gb|EGA88200.1| transcription-repair coupling factor [Planococcus donghaensis
           MPA1U2]
          Length = 1177

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/519 (14%), Positives = 183/519 (35%), Gaps = 46/519 (8%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            + ++ +      QL+ G++GS +      +   ++ P +++ PN + A ++Y +     
Sbjct: 15  QRFIEDLKQGNDHQLISGLSGSARPIFYQTIWSELEEPLLIVTPNLLHAQRIYDDLVRLM 74

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
               V  +             P  +    + S    ++   R      +      I ++ 
Sbjct: 75  GEKQVHLY-------------PAEELIAAEVSFSGPELRAHRIDTLDHMKSVGKGIYITP 121

Query: 278 VSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           V+ +  +    E +    +++  G+ ++  E L  LV   Y R  +    G F + G  +
Sbjct: 122 VAGMRKLLPTKEQWDYATLRIAEGEELDTDEWLLKLVAMGYSRTPMVTTPGEFALRGGIL 181

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +I+P + E    R+ +F  +++ +  F     + +  V+++ I   +  V          
Sbjct: 182 DIYPLNFE-HPVRIELFDTEVDSLRLFSAEDQRSLEKVQSLCILPANELVLSADQRILLA 240

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           + ++ +L   L +++ +        + Q I +D+++L+   + + +  Y+  +  ++   
Sbjct: 241 EKLEAQLASSLKKIKADD---TKALMMQHIQHDIDLLKQGETPEQLAKYASLIDTQSAF- 296

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
               L +Y P + L+F DE          + R +     +L E G      + +  L + 
Sbjct: 297 ----LGDYFPGNGLVFFDELGRIQEMTDTLEREEGDWIVSLLEEG----KFVHDVSLTYT 348

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
               +       S                  +     L      ++S   Q+  +  E+ 
Sbjct: 349 FREMM-------SKLEQKVTFLSLFVRTFPMVSIKKSLAFSCKPMQSFHGQMHLLKAEME 401

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  +I +    +   E +   L + ++      S            +++ G+   L
Sbjct: 402 RWTLGKSQIFIVAGGEERLEKVRSVLADYDMEAVIATSAT----------EIQGGQI-YL 450

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           V    L  G ++P   L  I D++       K +  Q +
Sbjct: 451 VD-GELSTGFEMPLQRLTVITDSELFKQQPKKKTRAQKL 488



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 100/296 (33%), Gaps = 46/296 (15%)

Query: 525  TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             + ++ATP    L     G+    +I        PV+          V + I     +G 
Sbjct: 774  VLTLTATPIPRTLHMSMIGVRDLSVIETPPANRFPVQSYVMEHNGALVREAIEREMARGG 833

Query: 584  RILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            ++           R  E++ + + E   RV Y H ++   E   +I     G +DVLV  
Sbjct: 834  QVFYLYNRVDDMTRKVEEIQQLVPEA--RVGYAHGQMSETELESVILSFLDGDYDVLVTT 891

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  G+DIP    + + +AD+ G L     L   +GR++R   +  +   D +   +  
Sbjct: 892  TIIETGIDIPNVNTLIVYNADRMG-LSQLYQLRGRVGRSSRVAYAYFMYQRDKVLTDVAE 950

Query: 700  ----AIDE----------TTRRREKQLEHN----KKHNIN-------------------P 722
                AI E            R    +   N    ++H                       
Sbjct: 951  KRLMAIKEFTELGSGFKIAMRDLTIRGAGNLLGSQQHGFIDSVGFDLYSQMLQEAIDERQ 1010

Query: 723  QSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
              VK++++  I+  L  DA   +  I      +   K    +    ++M    D L
Sbjct: 1011 TGVKKEVVPEIEISLDVDAYIPDTYISDGYQKIQMYKRVKGI-ETEEEMRELQDEL 1065


>gi|227509305|ref|ZP_03939354.1| transcription-repair coupling factor [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227191235|gb|EEI71302.1| transcription-repair coupling factor [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 1168

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 85/512 (16%), Positives = 197/512 (38%), Gaps = 57/512 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             Q+   +    + QL+ G++GS +T  +  +++   RP +++      A QL S+F N 
Sbjct: 4   FTQIASNLKVDSR-QLITGISGSARTLLIDNLLKTTTRPVVMVVDTLFHADQLVSDFSNL 62

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  F             P  +    + ++ + +    R  A   L+     ++V+
Sbjct: 63  LEDDQIFEF-------------PVEEMGAAELATSSPEYKAQRVLALNKLISGEPAVIVT 109

Query: 277 SVSCIYGI-GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           SVS +  +  S + +S   + + +    + ++L   L +  Y  Q +    G F + G  
Sbjct: 110 SVSGLKRLLPSPDQFSDAELTIDMDSEYDLEKLKLKLHQMGYTFQKLVAAPGDFSIRGSI 169

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +++FP + +D   R+  F  +++ +  F     + I+ ++TI+I   +  +         
Sbjct: 170 LDVFPLNNQD-PVRIDFFDTEVDSMRLFDVSNQRSIKTIDTIQILPATDLLITDQQRQRV 228

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
                 ELK +L   + +     A+++   I   +  LE   +      ++         
Sbjct: 229 AG----ELKDQLASEKAKLDDESAKKINNAIEPQIMDLENGLNDPKWLLFANLFY----- 279

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           +   +L +Y+ +D ++  D+          +   D        +    LPS   N    F
Sbjct: 280 DQSNSLLDYLSDDGVVVFDDYSRITDSQRQLESDDDVWLTDKIKNHELLPS--TNYTNDF 337

Query: 516 EE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQVEDV 571
           ++ +   +  T+++S        ++  G +     R   +VD  + +R  +   +Q+  +
Sbjct: 338 KKIFKVNKKATLILSL------FQKGLGRM-----RLDAIVD--ITVRPMQQFFSQMPML 384

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             EI    +Q   +++ V  +   + + + L +  I         +T     ++  ++L 
Sbjct: 385 RTEIGRWQKQKQSVIIMVQDQNRMQKVAQTLSDFEIAA------TQTEMSAILLHQVQL- 437

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                     L  G ++P  GLV I + +  G
Sbjct: 438 ------VHGNLENGFELPIAGLVVITEKEMFG 463



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I     +G 
Sbjct: 761 VLTLTATPIPRTLNMSMMGVRDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMARGG 820

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E     R  Y+H ++   +  +I+ D   G++DVLV   +
Sbjct: 821 QVFYLHNRVADIEKTVSQLSELVPDARIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTI 880

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G L     L   IGR++R      + YA  + +  ++  
Sbjct: 881 IETGVDIPNVNTLFVENADHMG-LSQLYQLRGRIGRSSR------VAYAYFMYQPNKVLT 933

Query: 702 DETTRRRE 709
           +   +R E
Sbjct: 934 EIGEKRLE 941


>gi|81429216|ref|YP_396217.1| transcription-repair coupling factor [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610859|emb|CAI55911.1| Transcription-repair coupling factor (TRCF) [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 1173

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 82/527 (15%), Positives = 190/527 (36%), Gaps = 48/527 (9%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
             +  +L+      + QLL G++GS KT  +A + +  ++P +++  N   A Q+  +  
Sbjct: 11  QQVQSVLENQKPGVR-QLLTGLSGSAKTLFLATIYKQQRQPLLIIESNMFQANQVAEDLA 69

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           N    + +  F             P  +    + +  + +    R      L      IV
Sbjct: 70  NQLNGDQIYTF-------------PVEEVMAAEIAVSSPESRAERVRTLSFLATGKKGIV 116

Query: 275 VSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+SV+ +  +      +     Q+++G  V+ K L + L +  Y R  +    G F + G
Sbjct: 117 VTSVAGMRRLLPTARQWRDSQTQIEMGSEVDPKILGAQLAEMGYHRDKLVGKPGEFAMRG 176

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D I+IFP   E+   R+ +F  +++ I  F   T + I N+E++ I   +  +     L 
Sbjct: 177 DIIDIFPLDTEN-PVRIELFDTEVDAIRSFEADTQRSIENLESVAIMPATDLLANAAQLE 235

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A + ++ + +    ++  +          +        +    + + +EN + ++    
Sbjct: 236 MAGEALQADYQQTAAKITAKDDQKALAVNFET------PISRLLAGERLENLALFVDYLY 289

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
           P     +L +Y     L+  D+          +     + +  +      LP+      +
Sbjct: 290 PDHT--SLIDYFKNSGLVVFDDYPRIQETQRVLAEEAANWQTDMLGSRRLLPAQKLLVDV 347

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
                    P   +     G  +L+     +     R          ++   +Q+  +  
Sbjct: 348 HHLMKQDQHPHLYLSLFQKGMGKLKL--DTLGNMPTRN---------VQQFFSQMPLLKT 396

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E++   +Q   +++ V   +  + + +  ++  I              +     L  G+ 
Sbjct: 397 EMSRWQKQQQTVVVLVSDAKRVKKIDQTFHDFEIEAT-----------VTTKTKLVAGQI 445

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            ++     L+ G ++P+  LV + + +       K    QT+  A R
Sbjct: 446 QIV--QGSLQNGFELPDLKLVVLTEKELFNTAPKKKVRRQTLANAER 490



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 6/183 (3%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     G+    +I        P++          + 
Sbjct: 760 ERLKQLKAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPIQTYVMEQNAGAMR 819

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRL 630
           + I    ++  ++          E   + +        V Y H ++   +   +I D   
Sbjct: 820 EAIERELERNGQVFYLHNRVSDIEQTVDEIQALVPEATVGYAHGQMTEAQLEGVIYDFVQ 879

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           GK+DVLV   ++  G+D+P    + + DAD  G L     L   IGR++R      +   
Sbjct: 880 GKYDVLVTTTIIETGVDMPNVNTMIVEDADHYG-LSQLYQLRGRIGRSSRVAYGYFMYKP 938

Query: 691 DTI 693
           D +
Sbjct: 939 DKV 941


>gi|260584473|ref|ZP_05852220.1| transcription-repair coupling factor [Granulicatella elegans ATCC
           700633]
 gi|260157991|gb|EEW93060.1| transcription-repair coupling factor [Granulicatella elegans ATCC
           700633]
          Length = 1174

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 94/513 (18%), Positives = 200/513 (38%), Gaps = 57/513 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
            + QL+LG+TG+ K   +A   E  + P +V+ P  + A QLY E   ++  + V  F  
Sbjct: 24  MQSQLVLGLTGAAKHLAVANAYENWKGPVVVVTPTMLQATQLYEELVQWY-EDEVYLFT- 81

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGS 286
                         ++   + S  + ++   R    + L      IVV  +S I   +  
Sbjct: 82  ------------VEESLAAEYSIHSPEVVSNRIRTLQFLTTGEKGIVVVPLSGIQKPLVP 129

Query: 287 VESYSQMIVQLKIGD-SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +E + +  ++L +G+  +E ++L++ L +  Y+R+ +    G F V G  ++I+P + E 
Sbjct: 130 LEVWKKSTIELVVGETQLEVEDLVTKLGRMGYRREAMVATPGDFSVRGGIVDIYPLNQE- 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+  F ++++ +  F   T + +  VE I +   +        +  A   I++  + 
Sbjct: 189 HPIRLDFFDDELDSLRYFDAETQRSLEMVENIILLPATDIPFEYEVVFEAKAKIQKAYEK 248

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
            +   E + R    Q L  ++ + L  LE       I  +              ++ +Y+
Sbjct: 249 DIKSSESDER---TQLLTNQMNHLLAQLEEGEIPPKISYWLELFYKEK-----TSILDYV 300

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
            +   L VD+      +   ++      K    E G    S      + FE    L+ +T
Sbjct: 301 SKKGYLLVDDYARIQEKQRSLHEEAGLWKIHQLELGMIASS----IDMIFEGKKVLKDST 356

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS---ARTQVEDVYDEINLAAQQG 582
           +     P ++       +  + + R T      ++ RS     +Q+  V  E +  A+Q 
Sbjct: 357 L-----PRTY-----FSLFQKGLGRLTFEAIHNIQERSMTQFFSQMPMVKVEADRWAKQK 406

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++ V     A  + +  ++ +I                I ++++ G   ++VG    
Sbjct: 407 ATVIVVVDQLTRAAKVEQTFHDFDIPA-------------IITKEVQEGILQIMVGT--F 451

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             G ++P+   V + + +    L  +    Q I
Sbjct: 452 SHGFELPQDKFVVVTEKELFNKLTKRAPRTQKI 484



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 6/183 (3%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     G+    +I        PV+      Q   + 
Sbjct: 759 ERLKQLKSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPSNRYPVQTFVMEQQGITIK 818

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRL 630
           D I     +G ++          E   + L +     R   +H ++       I+     
Sbjct: 819 DGIERELARGGQVFYLYNRVETIEKKADELRQLVPEARVGVIHGQMSETTLENILYQFIE 878

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++DVLV   ++  G+DIP    + I +AD  G L     L   +GR+ R   + ++   
Sbjct: 879 GEYDVLVTTTIIETGVDIPNVNTLFIENADHMG-LSQLYQLRGRVGRSNRIAYAYLMYQP 937

Query: 691 DTI 693
           D  
Sbjct: 938 DKT 940



 Score = 39.3 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 14/175 (8%)

Query: 49  IRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALAR 108
           I  + G H      ++ + Q+  ++     +     S    +T+   E  +      L  
Sbjct: 530 IHYQDGGHLFVPVHQIKLVQKYVSSDAKVPKLNKLGSSEWAKTKRKVETKIEDIADELIE 589

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSR 167
           L    +            + ++ +  + +   F+    Y  + DQ  +I ++   +   +
Sbjct: 590 LYAKRD----------AEKGYAFSKDTVEQKEFEDAFPYSETQDQLRSIEEIKADMQKDK 639

Query: 168 EKVQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPH 219
              +LL+G  G GKT   M  V +A+   + A V+ P  ILA Q Y  F   F  
Sbjct: 640 PMDRLLVGDVGYGKTEVAMRAVFKALMDGKQAAVLVPTTILAEQHYENFVQRFAD 694


>gi|315660330|ref|ZP_07913183.1| transcription-repair coupling factor [Staphylococcus lugdunensis
           M23590]
 gi|315494619|gb|EFU82961.1| transcription-repair coupling factor [Staphylococcus lugdunensis
           M23590]
          Length = 1173

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 90/513 (17%), Positives = 182/513 (35%), Gaps = 64/513 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q     +L +     ++  L+ G++ S K   +A+      +  +++  N   A +L ++
Sbjct: 11  QDKRFQELDQVF--GQENILVTGLSPSAKATIIAEKYLTDHKQMLLITNNLYQADKLETD 68

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
              +     V  +             P  D   E+ S+ + Q+   R     +L +    
Sbjct: 69  LLQYIDSAEVYKY-------------PVQDIMTEEFSTQSPQLMSERVRTLTALAQNEKG 115

Query: 273 IVVSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           + +  ++ +    +    +    + L IG  ++   LL  LV   Y+R+ +    G F V
Sbjct: 116 LFIVPLNGLKKWQTPIDIWQAHQIHLHIGQDIDVAHLLQQLVNMGYRRESVVSHIGEFSV 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I+I+P   E    R+ +F  +++ I +F   T +   N++ + I + S YV     
Sbjct: 176 RGGIIDIYPLIGE--PVRIELFDTEVDSIRDFDIETQRSNNNLDGVSITSASDYVITDDV 233

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYS 446
           +      +K   +    ++E   R       E+  L      D ++L    +        
Sbjct: 234 IKHLQSNLKAAYEDTRPKIETSVRNDLKETYESFNLIDTTAVDHQLLRRLVAFMY----- 288

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS 506
                    E P TL +Y  +D+++ VDE +        +          L E G     
Sbjct: 289 ---------ETPATLIDYFQQDAIVVVDEYNRIKETEETLTTEVEDFIHNLIESGNGFIG 339

Query: 507 CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
                 ++++ +  L     V   T           + +  II+ +        ++    
Sbjct: 340 QT---FMQYDGFEHLLTHFPVAYFTL----FTSSMTVKLADIIKFSCKP-----VQQFYG 387

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVKTLERIEII 625
           Q + +  E     Q    I++ V T+   E +   L E +I  V+ +HS + +       
Sbjct: 388 QYDIMRSEFQRYVQNDYTIVVLVETETKVERIQAMLNEMHIPTVKNIHSGIAS------- 440

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
                     +V    L EG ++P   LV I +
Sbjct: 441 -------GQAIVTEGSLSEGFELPYMQLVVITE 466



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 70/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +  
Sbjct: 770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDG 829

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + E +I V   H ++   +  E +     G +D+LV  
Sbjct: 830 QVFYLYNKVQSIYEKREQLQMLMPEASIAVA--HGQMTERDLEETMLSFINGDYDILVTT 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I +AD+ G  +    L Q  GR  R+       +          
Sbjct: 888 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHP----ANK 939

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 940 VLTETAEDRLQAIKEFTELG 959



 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKT-FTMAKV 188
               + +   F++   Y  + DQ  +I ++   +   +   +LL G  G GKT   +   
Sbjct: 602 FGEDTAEQQAFELDFPYELTPDQAKSIEEIKADMELQKPMDRLLCGDVGYGKTEVAIRAA 661

Query: 189 IEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            +A+   +    + P  ILA Q Y           VE
Sbjct: 662 FKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVE 698


>gi|239637489|ref|ZP_04678463.1| transcription-repair coupling factor [Staphylococcus warneri
           L37603]
 gi|239596934|gb|EEQ79457.1| transcription-repair coupling factor [Staphylococcus warneri
           L37603]
          Length = 1169

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 88/504 (17%), Positives = 185/504 (36%), Gaps = 72/504 (14%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+   A Q+  +++  N   A ++ ++   +     +  + 
Sbjct: 23  GQDNILVTGLSPSAKATIIAEKYLADQKQMLLVTNNLYQADKIEADILQYVSGEEIYKY- 81

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L      + +  ++ +   + 
Sbjct: 82  ------------PVQDIMTEEFSTQSPQLMSERVRTLTALAHGEKGLFIVPLNGLKKWLT 129

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L +GD ++  + L+ LV   Y+R+ +    G F + G  I+I+P     
Sbjct: 130 PVEMWRNHQMTLNVGDDIDVDDFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIGS- 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   N+E++ I   S Y+     ++     +K   + 
Sbjct: 189 -PVRIELFDTEIDSIRDFDVETQRSNDNLESVDITTASDYIITDEVISHLQTQLKAAYED 247

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              ++EK  R       E+ +L +   +D ++L    +                 + P T
Sbjct: 248 TRPKIEKSVRNDLKETYESFKLFESTFFDHQLLRRLVAFMY--------------DQPST 293

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y   D ++ VDE +        +        + L E G           ++++ +  
Sbjct: 294 IIDYFANDVVIAVDEYNRIKETEETLTTEVDDFISNLIESGNGFIGQS---FMQYDGFET 350

Query: 521 LRPT------TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           L         T+  S+ P   EL+         II+ +        ++    Q + +  E
Sbjct: 351 LLDERPVAYFTLFTSSMPV--ELDH--------IIKFSCKP-----VQQFYGQYDIMRSE 395

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                     I++ V T+   E +   L E +I V   H +  +                
Sbjct: 396 FQRFIHNDYAIVVLVETETKVERIQSMLNEMHIPV-VTHIDQASTS------------GQ 442

Query: 635 VLVGINLLREGLDIPECGLVAILD 658
            +V    L EG ++P   LV I +
Sbjct: 443 AVVVEGSLSEGFELPYMQLVVITE 466



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 11/184 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +  
Sbjct: 770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDG 829

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 830 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINHEYDILVTT 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I +AD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 888 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPANKVLNE 943

Query: 700 AIDE 703
             +E
Sbjct: 944 TAEE 947



 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 72/216 (33%), Gaps = 39/216 (18%)

Query: 15  IQSISTRVDDLDYFSFEEK---QLEVDKTMVADAMRRIRSEAGKHRKNAAKRMLIHQREN 71
           ++++       DY   + K   QL V    +    + + SE    R N   ++   + + 
Sbjct: 515 VETLEVGEQHRDYIKLQYKGTDQLFVPVDQMDQVQKYVASEDKSPRLN---KLGGTEWKK 571

Query: 72  TASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSI 131
           T +K                    +Q++      L  L +     +  G  + P      
Sbjct: 572 TKAKV-------------------QQSVEDIADELIDLYKQR--EMSVGYQFGP------ 604

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVIE 190
              +++ + F++   Y  + DQ  +I ++   +   R   +LL G  G GKT    +   
Sbjct: 605 --DTEEQSTFELDFPYELTPDQSKSIEEIKGDMERERPMDRLLCGDVGYGKTEVAVRAAF 662

Query: 191 AM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
                 +    + P  ILA Q Y           VE
Sbjct: 663 KAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVE 698


>gi|289551698|ref|YP_003472602.1| Transcription-repair coupling factor [Staphylococcus lugdunensis
           HKU09-01]
 gi|289181229|gb|ADC88474.1| Transcription-repair coupling factor [Staphylococcus lugdunensis
           HKU09-01]
          Length = 1173

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 90/513 (17%), Positives = 182/513 (35%), Gaps = 64/513 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q     +L +     ++  L+ G++ S K   +A+      +  +++  N   A +L ++
Sbjct: 11  QDKRFQELDQVF--GQENILVTGLSPSAKATIIAEKYLTDHKQMLLITNNLYQADKLETD 68

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
              +     V  +             P  D   E+ S+ + Q+   R     +L +    
Sbjct: 69  LLQYIDSAEVYKY-------------PVQDIMTEEFSTQSPQLMSERVRTLTALAQNEKG 115

Query: 273 IVVSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           + +  ++ +    +    +    + L IG  ++   LL  LV   Y+R+ +    G F V
Sbjct: 116 LFIVPLNGLKKWQTPIDIWQAHQIHLHIGQDIDVAHLLQQLVNMGYRRESVVSHIGEFSV 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I+I+P   E    R+ +F  +++ I +F   T +   N++ + I + S YV     
Sbjct: 176 RGGIIDIYPLIGE--PVRIELFDTEVDSIRDFDIETQRSNNNLDGVSITSASDYVITDDV 233

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYS 446
           +      +K   +    ++E   R       E+  L      D ++L    +        
Sbjct: 234 IKHLQSNLKAAYEDTRPKIETSVRNDLKETYESFNLIDTTAVDHQLLRRLVAFMY----- 288

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS 506
                    E P TL +Y  +D+++ VDE +        +          L E G     
Sbjct: 289 ---------ETPATLIDYFQQDAIVVVDEYNRIKETEETLTTEVEDFIHNLIESGNGFIG 339

Query: 507 CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
                 ++++ +  L     V   T           + +  II+ +        ++    
Sbjct: 340 QT---FMQYDGFEHLLTHFPVAYFTL----FTSSMTVKLADIIKFSCKP-----VQQFYG 387

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVKTLERIEII 625
           Q + +  E     Q    I++ V T+   E +   L E +I  V+ +HS + +       
Sbjct: 388 QYDIMRSEFQRYVQNDYTIVVLVETETKVERIQAMLNEMHIPTVKNIHSGIAS------- 440

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
                     +V    L EG ++P   LV I +
Sbjct: 441 -------GQAIVTEGSLSEGFELPYMQLVVITE 466



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +  
Sbjct: 770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDG 829

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + E +I V   H ++   +  E +     G +D+LV  
Sbjct: 830 QVFYLYNKVQSIYEKREQLQMLMPEASIAVA--HGQMTERDLEETMLSFINGDYDILVTT 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I +AD+ G  +    L Q  GR  R+       +     K    
Sbjct: 888 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPTNK---- 939

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R + ++   +  
Sbjct: 940 VLTETAEDRLQAIKEFTELG 959



 Score = 38.9 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKT-FTMAKV 188
               + +   F++   Y  + DQ  +I ++   +   +   +LL G  G GKT   +   
Sbjct: 602 FGEDTAEQQAFELDFPYELTPDQAKSIEEIKADMELQKPMDRLLCGDVGYGKTEVAIRAA 661

Query: 189 IEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            +A+   +    + P  ILA Q Y           VE
Sbjct: 662 FKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVE 698


>gi|328956571|ref|YP_004373957.1| transcription-repair coupling factor [Carnobacterium sp. 17-4]
 gi|328672895|gb|AEB28941.1| transcription-repair coupling factor [Carnobacterium sp. 17-4]
          Length = 1173

 Score =  201 bits (511), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 79/520 (15%), Positives = 197/520 (37%), Gaps = 48/520 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +  LL  +    + QL+ G++GS +T  ++ ++   ++P I++  N   A QL  +F ++
Sbjct: 14  VKALLDQLEQ-HQSQLITGLSGSARTLVLSTLVAEKKKPFIIVTHNLFHANQLMEDFADW 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P + +  F             P  +    + S  + +    R +    LL     +V+ 
Sbjct: 73  VPEDRLHLF-------------PVDEMIYAEMSVASPEARAERVATLDFLLSEKFGVVIV 119

Query: 277 SVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            ++ +  +   +  +      +K G  +E   L   LV   Y RQ +    G F + G  
Sbjct: 120 PLAGVRKVMPPKEIWKAAQFTIKQGGELELTHLSQRLVDMGYTRQQLVNSPGEFSIRGGI 179

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+ S  E+   R+ +F  +++ +  F   T + I+ +E + I   +  V  +  L  A
Sbjct: 180 VDIY-SLTEEFPIRIDLFDTEVDSLRYFDAATQRSIQTIEKVTILPATDTVYTKEQLTAA 238

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
                + ++     L     + E Q   +++T   +  +       +  ++ ++      
Sbjct: 239 APRFSKAVE---RNLGLIQDVSEKQTFTKQMTPISDAFQKGEPIDELTMFTDFIYPEK-- 293

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
               ++ +Y+ +  ++ +DE    +     +   +                  + R L+ 
Sbjct: 294 ---NSVLDYMSKKGIVVMDEYPRIMDTDRRLNEEEAEWVTNKLS---------ERRILQN 341

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           + ++      +   +T   +     +G+   +  +          ++    Q+  +  E+
Sbjct: 342 QVFSNNFRDQLKALSTSILYFAVFQKGMGNTRFNQIHAFQYRN--MQQFFGQMPLLKTEM 399

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   +Q   I++ V     A+ + +   +  I      S++    R+E+ +        V
Sbjct: 400 DRWIKQKNTIVIMVPNADRAKKVHQTFKDFEIT-----SKIVKPARLELEK--------V 446

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            +    ++ G ++P   LV I + +    +  KT+  QT+
Sbjct: 447 QIVEGYVQSGFEMPTDKLVVITERELFNKVTKKTARRQTL 486



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  + + +     +G 
Sbjct: 772 VLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPVQTYVMEQNLGAIREAVEREMARGG 831

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + L +     R  Y H ++   +    +     G++D+LV   +
Sbjct: 832 QVFYLYNRVATIEKKVDELQQLIPDARIGYAHGQMTEGQLENTLLQFIEGEYDMLVTTTI 891

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + + +AD  G  +    L Q  GR  R+       +     K     +
Sbjct: 892 IETGVDMPNVNTLFVENADHMGLSQ----LYQLRGRVGRSNRVAYAYFLYQPNK----VL 943

Query: 702 DETTRRREKQLE 713
           +E + +R + ++
Sbjct: 944 NEVSEKRLQAIK 955


>gi|163791051|ref|ZP_02185472.1| transcription-repair coupling factor [Carnobacterium sp. AT7]
 gi|159873696|gb|EDP67779.1| transcription-repair coupling factor [Carnobacterium sp. AT7]
          Length = 1173

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 88/530 (16%), Positives = 203/530 (38%), Gaps = 58/530 (10%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQL 209
           + D  A ++QL      + + QL+ G++GS +T  ++ ++   ++P I++  N   A QL
Sbjct: 11  APDVGALLSQL-----EQHQSQLVTGLSGSARTLVLSTLVAEKKKPFIIVTHNLFHANQL 65

Query: 210 YSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER 269
             +F ++ P + +  F             P  +    + S  + +    R +    LL  
Sbjct: 66  MEDFADWVPEDRLHLF-------------PVDEMIYAEMSVASPEARAERVATLDFLLSE 112

Query: 270 NDCIVVSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
              +V+  ++ +  +   ++ +      +K G  ++   L   LV   Y RQ +    G 
Sbjct: 113 KYGVVIVPLAGVRKLLPPKALWKAAQFTIKQGGELDLTNLAQRLVDMGYTRQQLVSTPGE 172

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           F + G  I+I+ S  E+   R+ +F  +++ +  F   + + I+ +E I I   S  V  
Sbjct: 173 FSIRGGIIDIY-SLTEEFPVRIDLFDTEVDSLRYFDAASQRSIQTIEKIIILPASDTVYT 231

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
           +  L  A     + ++     L       E Q   +++T   +  +       +  ++ +
Sbjct: 232 KEQLTAAAPKFSKAVE---RNLGLIQDTSEKQTFTRQVTPISDAFQKGEPIDELMMFTDF 288

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
           +          ++ +Y+ +  ++ +DE    +         D  R+    E  +      
Sbjct: 289 IYPEK-----SSVLDYMSKKGIVVMDEYPRIM---------DTDRRLNEEEAEWVTSKLS 334

Query: 509 DNRPLRFEEW-NCLRPTTIVVSATPGSWE--LEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565
           + R L+ + + N  R     +S T   +    +        QI            ++   
Sbjct: 335 ERRILQNQVFSNNFRDQLKNLSNTILYFSVFQKGMGNTRFNQIHAFQYRN-----MQQFF 389

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            Q+  +  E++   +Q   +++ V     A+ + +   +  I      S++    R+E+ 
Sbjct: 390 GQMPLLKTEMDRWIKQKNTVIIMVPNADRAKKVQQTFKDFEIT-----SKIVKPARLELE 444

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +        V +    ++ G ++P   LV I + +    +  KT+  QT+
Sbjct: 445 K--------VQIVEGYVQSGFEMPTDKLVVITERELFNKVTKKTARRQTL 486



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+       +  V + +     +G 
Sbjct: 772 VLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPVQTYVMEQNLGAVREAVEREMARGG 831

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + L +     R  Y H ++   +    +     G++DVLV   +
Sbjct: 832 QVFYLYNRVATIEKKVDELQQLIPDARIGYAHGQMTEGQLENTLFQFIEGEYDVLVTTTI 891

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + + +AD  G  +    L Q  GR  R+       +     K     +
Sbjct: 892 IETGVDMPNVNTLFVENADHMGLSQ----LYQLRGRVGRSNRVAYAYFLYQPNK----VL 943

Query: 702 DETTRRREKQLE 713
           +E + +R + ++
Sbjct: 944 NEVSEKRLQAIK 955


>gi|184154691|ref|YP_001843031.1| transcription-repair coupling factor [Lactobacillus fermentum IFO
           3956]
 gi|183226035|dbj|BAG26551.1| transcription-repair coupling factor [Lactobacillus fermentum IFO
           3956]
          Length = 1180

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 86/547 (15%), Positives = 200/547 (36%), Gaps = 52/547 (9%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A +++ + I S ++ QL+ GV+GS KT  +A +   +  P +V+  +     +L ++
Sbjct: 9   QQPAFSKIKEVIDSGQR-QLITGVSGSAKTLLLAALQGELSHPQLVVCDSLYHMQELVAD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            +N    + V  F             P  +    + ++ +      R  A  +LL     
Sbjct: 68  LENLLGEDQVFAF-------------PVEEVLATEVATASPDYRLQRVQALNTLLADQAA 114

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           +VV+  + +   +     +    + +++G  ++   + + L+   Y+RQ + +  G F +
Sbjct: 115 VVVTDAAGLRRRLPKPGDFQAATLTVEVGGELDPTTVGTQLMAMGYQRQKMVLKPGDFAM 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++I+ +       R+ +F  +++ +  F   + + + N+  + I   + ++ P   
Sbjct: 175 RGSIVDIY-ALNTAHPVRIDLFDTEVDSLRYFDAESQRSVENIRAVTILPATDFIAPPAK 233

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           L      +K EL+     L +     E Q L       +  L+       +  Y+  +  
Sbjct: 234 LAQ----LKGELQDDYHHLAQTADEEERQALFGLFDPVISALDAGQLPVEMLEYADRVY- 288

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               E P +L +Y+P  S L +D+          +   +            R+     + 
Sbjct: 289 ----EQPASLLDYLPAKSNLVLDDWGRIKEGAKRITEQETAWLMDKVAAKRRVRGATLDN 344

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            +         P T +     G  +++  Q  I +   R         E++   +Q++ +
Sbjct: 345 GVMETLPKRPGPQTYLALFQKGLGQVKLAQ--ISDLATR---------EMQRFFSQLDLL 393

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             E+     QG  +++   +      +   L +  + V     +             +L 
Sbjct: 394 KGELKRWQSQGATVVIMANSPERRNQVATTLADFGVAVVQTAPD-------------QLM 440

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVIL 688
           +  V +    L  G ++P   LV I +A+    ++++    Q +    R     + K   
Sbjct: 441 EHQVQLVAATLANGFEMPPANLVVITEAEMFKQVKNRRPRAQKLANAERIKSYTDLKPGD 500

Query: 689 YADTITK 695
           Y   +  
Sbjct: 501 YVVHVNH 507



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 14/188 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L      + +  +    PTG       +      V  + D I    Q+
Sbjct: 770 VLTLTATPIPRTLHMSMMGVRDLSVLETPPTGRYPIQTYVLEQNGAV--IRDGILREMQR 827

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E +   L E     R  Y+H ++   E   ++ D   G++DVLV  
Sbjct: 828 GGQVYYLHNRVHDIERVVAQLAELVPEARIGYIHGQMSENELEGVLYDFIRGEYDVLVTT 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +++  G+DI     + + DAD+ G  +    L Q  GR  R+     + YA  + +  ++
Sbjct: 888 SIIETGVDIANVNTLFVEDADRLGLAQ----LYQIRGRIGRSNR---VAYAYFMYQENKV 940

Query: 700 AIDETTRR 707
             ++  +R
Sbjct: 941 LTEQGEKR 948


>gi|259501958|ref|ZP_05744860.1| transcription-repair coupling factor [Lactobacillus antri DSM
           16041]
 gi|259170135|gb|EEW54630.1| transcription-repair coupling factor [Lactobacillus antri DSM
           16041]
          Length = 1185

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 94/552 (17%), Positives = 200/552 (36%), Gaps = 59/552 (10%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q     QLL+      + QL+ G++GS +T  +A ++E  Q+P + +  +     +L  +
Sbjct: 16  QSPEFKQLLQQRQPGTR-QLVTGISGSARTLLLAGLVEQSQQPVLAVVDSLSQVEELADD 74

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             N  P + V  F             P  +    + ++ +      R  A  +L  +   
Sbjct: 75  LANLLPPDRVYQF-------------PVEEVLAAEVATSSPNYRLQRVQALDALDSQRPA 121

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           +VV+SV+ +   + + E ++Q  +++ +G  ++ +     L    Y+ Q + +  G F +
Sbjct: 122 VVVTSVAGLRRNVFAPEFFAQATLKVAVGGELDPERARQQLSAMGYQLQKMVLRPGDFAI 181

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I+++ +   D   R+ +F  +++ +  F   T + + N E ++I   +  + P   
Sbjct: 182 RGSIIDVY-ALNTDNPVRIDLFDTEVDSLRYFDASTQKSVGNAEEVEILPATDLILPPAE 240

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
            +     +K++   +L    ++G     Q++  R T  L  L+       +  +   +  
Sbjct: 241 FSRVQAAVKQQF-DQLKAELQDGDADILQQVNNRFTPLLTALQERRLPNEMLEFGDLVYP 299

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
                   +L +Y+  D  L++D+      +   +   D        +Y  +L S     
Sbjct: 300 TR-----HSLLDYLAADGALYLDDYSRLKDRAGKLADEDQGWLEEKVKY-HQLVSV---- 349

Query: 512 PLRFEEWNCLRP-----TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
           P    E+  L                G+  L   Q  +VE   RP               
Sbjct: 350 PSLSNEFAKLVKADQHAQLFGALFKKGAGNLRFSQ--LVEITSRPMQRFF---------G 398

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q+  +  E+     QG  I++        + +   L +  I V  + +    L+      
Sbjct: 399 QMPLLKTELQRWTDQGQTIIIMADGNERRQQIARTLTDFGIPV--IETAADQLQVNT--- 453

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVN 683
                   V +    L  G ++P  GLV I + +    ++ +    Q +    R     +
Sbjct: 454 --------VQLVAASLNNGFEMPAAGLVVITEGELFKQVKKRRHRAQKLANAERIKSYTD 505

Query: 684 SKVILYADTITK 695
            K   Y   +  
Sbjct: 506 LKPGDYVVHVNH 517



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 7/174 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          + D I     +G 
Sbjct: 780 VLTLTATPIPRTLNMSMLGVRDLSVLETPPAGRFPIQTYVMEQNGGAIRDGITRELNRGG 839

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E+    L       R  Y+H ++   E   ++ D   G +DVLV  ++
Sbjct: 840 QVYYLHNRVSDIEETVMKLQALVPDARIGYIHGKMGENELETVLYDFIQGNYDVLVTTSI 899

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  G+DIP    + + +AD  G  +    L Q  GR  R+       +     K
Sbjct: 900 IETGVDIPNVNTLFVENADHLGLAQ----LYQIRGRIGRSNRVAYAYFMYQPNK 949


>gi|330686080|gb|EGG97702.1| transcription-repair coupling factor [Staphylococcus epidermidis
           VCU121]
          Length = 1169

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 92/501 (18%), Positives = 183/501 (36%), Gaps = 66/501 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            +   L+ G++ S K   +A+   A Q+  +++  N   A ++  +   +     +  + 
Sbjct: 23  GQDNILVTGLSPSAKATIIAEKYLADQKQMLLVTNNLYQADKIEVDILQYVSGEEIYKY- 81

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IG 285
                       P  D   E+ S+ + Q+   R     +L      + +  ++ +   + 
Sbjct: 82  ------------PVQDIMTEEFSTQSPQLMSERVRTLTALAHGEKGLFIVPLNGLKKWLT 129

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            VE +    + L +GD ++  + L+ LV   Y+R+ +    G F + G  I+I+P     
Sbjct: 130 PVEMWRNHQMTLNVGDDMDVDDFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIG-- 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I +F   T +   N+E+++I   S Y+     +N     +K   + 
Sbjct: 188 APVRIELFDTEIDSIRDFDVETQRSNDNLESVEITTASDYIITDEVINHLQTQLKTAYED 247

Query: 406 RLIELEKEGRLL-----EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              ++EK  R       E+ +L +   +D ++L    +                 + P T
Sbjct: 248 TRPKIEKSVRNDLKETYESFKLFESTFFDHQLLRRLVAFMY--------------DQPST 293

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y   D ++ VDE +        +          L E G         +   FE    
Sbjct: 294 IIDYFANDVVIAVDEYNRIKETEETLTTEVDDFINNLIESGNGFIGQSFMQYDGFETLLE 353

Query: 521 LRP---TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
            RP    T+  S+ P   EL+         II+ +        ++    Q + +  E   
Sbjct: 354 ERPVAYFTLFTSSMPV--ELDH--------IIKFSCKP-----VQQFYGQYDIMRSEFQR 398

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                  I++ V T+   E +   L E +I V   H +  +                 +V
Sbjct: 399 FIHNDYAIVVLVETETKVERIQSMLNEMHIPV-VTHIDQASTS------------GQAVV 445

Query: 638 GINLLREGLDIPECGLVAILD 658
               L EG ++P   LV I +
Sbjct: 446 VEGSLSEGFELPYMKLVVITE 466



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 11/184 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + +     +  
Sbjct: 770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDG 829

Query: 584 RILLTVLTKRMA----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + + NI V   H ++   +  E +      ++D+LV  
Sbjct: 830 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINHEYDILVTT 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I +AD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 888 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPANKVLNE 943

Query: 700 AIDE 703
             +E
Sbjct: 944 TAEE 947



 Score = 38.9 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 72/216 (33%), Gaps = 39/216 (18%)

Query: 15  IQSISTRVDDLDYFSFEEK---QLEVDKTMVADAMRRIRSEAGKHRKNAAKRMLIHQREN 71
           ++++       DY   + K   QL V    +    + + SE    R N   ++   + + 
Sbjct: 515 VETLEVGEQHRDYIKLQYKGTDQLFVPVDQMDQVQKYVASEDKSPRLN---KLGGTEWKK 571

Query: 72  TASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSI 131
           T +K                    +Q++      L  L +     +  G  + P      
Sbjct: 572 TKAKV-------------------QQSVEDIADELIDLYKQR--EMSVGYQFGP------ 604

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVIE 190
              +++ + F++   Y  + DQ  +I ++   +   R   +LL G  G GKT    +   
Sbjct: 605 --DTEEQSTFELDFPYELTPDQSKSIDEIKGDMERERPMDRLLCGDVGYGKTEVAVRAAF 662

Query: 191 AM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
                 +    + P  ILA Q Y           VE
Sbjct: 663 KAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVE 698


>gi|227514331|ref|ZP_03944380.1| transcription-repair coupling factor [Lactobacillus fermentum ATCC
           14931]
 gi|227087303|gb|EEI22615.1| transcription-repair coupling factor [Lactobacillus fermentum ATCC
           14931]
          Length = 1180

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 83/547 (15%), Positives = 199/547 (36%), Gaps = 52/547 (9%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A +++ + I S ++ QL+ GV+GS KT  +A +   +  P +V+  +     +L ++
Sbjct: 9   QQPAFSKIKEVIDSGQR-QLITGVSGSAKTLLLAALQGELSHPQLVVCDSLYHMQELVAD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            +N    + V  F             P  +    + ++ +      R  A  +LL     
Sbjct: 68  LENLLGEDQVFAF-------------PVEEVLATEVATASPDYRLQRVQALNTLLADQAA 114

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           +VV+  + +   +     +    + +++G  ++   + + L+   Y+RQ + +  G F +
Sbjct: 115 VVVTDAAGLRRRLPKPGDFQAATLTVEVGGELDPTTVGTQLMAMGYQRQKMVLKPGDFAM 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++I+ +       R+ +F  +++ +  F   + + + N+  + I   + ++ P   
Sbjct: 175 RGSIVDIY-ALNTAHPVRIDLFDTEVDSLRYFDAESQRSVENIRAVTILPATDFIAPPAK 233

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           L      ++++       L +     E Q L       +  L+       +  Y+  +  
Sbjct: 234 LAQLKGGLQDDYH----HLAQTADEEERQALFGLFDPVISALDAGQLPVEMLEYADRVY- 288

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               E P +L +Y+P  S L +D+          +   +            R+     + 
Sbjct: 289 ----EQPASLLDYLPAKSNLVLDDWGRIKESAKRITEQETAWLMDKVAAKRRVRGATLDN 344

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            +         P T +     G  +++  Q  I +   R         E++   +Q++ +
Sbjct: 345 GVMETLPKRPGPQTYLALFQKGLGQVKLAQ--ISDLATR---------EMQRFFSQLDLL 393

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             E+     QG  +++   +      +   L +  + V     +             +L 
Sbjct: 394 KGELKRWQSQGATVVIMANSPERRNQVATTLADFGVAVVQTAPD-------------QLM 440

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVIL 688
           +  V +    L  G ++P   LV I +A+    ++++    Q +    R     + K   
Sbjct: 441 EHQVQLVAATLANGFEMPPANLVVITEAEMFKQVKNRRPRAQKLANAERIKSYTDLKPGD 500

Query: 689 YADTITK 695
           Y   +  
Sbjct: 501 YVVHVNH 507



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 14/188 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L      + +  +    PTG       +      V  + D I    Q+
Sbjct: 770 VLTLTATPIPRTLHMSMMGVRDLSVLETPPTGRYPIQTYVLEQNGAV--IRDGILREMQR 827

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E +   L E     R  Y+H ++   E   ++ D   G++DVLV  
Sbjct: 828 GGQVYYLHNRVHDIERVVAQLAELVPEARIGYIHGQMSENELEGVLYDFIRGEYDVLVTT 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +++  G+DI     + + DAD+ G  +    L Q  GR  R+     + YA  + +  ++
Sbjct: 888 SIIETGVDIANVNTLFVEDADRLGLAQ----LYQIRGRIGRSNR---VAYAYFMYQENKV 940

Query: 700 AIDETTRR 707
             ++  +R
Sbjct: 941 LTEQGEKR 948


>gi|260663740|ref|ZP_05864628.1| transcription-repair coupling factor [Lactobacillus fermentum
           28-3-CHN]
 gi|260551791|gb|EEX24907.1| transcription-repair coupling factor [Lactobacillus fermentum
           28-3-CHN]
          Length = 1180

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 86/547 (15%), Positives = 199/547 (36%), Gaps = 52/547 (9%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A +++ + I S ++ QL+ GV+GS KT  +A +   +  P +V+  +     +L ++
Sbjct: 9   QQPAFSKIKEVIDSGQR-QLITGVSGSAKTLLLAALQGELSHPQLVVCDSLYHMQELVAD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            +N    + V  F             P  +    + ++ +      R  A  +LL     
Sbjct: 68  LENLLGEDQVFAF-------------PVEEVLATEVATASPDYRLQRVQALNTLLADQAA 114

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           +VV+  + +   +     +    + +++G  ++   + + L+   Y+RQ + +  G F +
Sbjct: 115 VVVTDAAGLRRRLPKPGDFQAATLTVEVGGELDPTTVGTQLMAMGYQRQKMVLKPGDFAM 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++I+ +       R+ +F  +++ +  F   + + + N+  + I   + ++ P   
Sbjct: 175 RGSIVDIY-ALNTAHPVRIDLFDTEVDSLRYFDAESQRSVENIRAVTILPATDFIAPPAK 233

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           L      +K EL+     L +     E Q L       +  L+       +  Y+  +  
Sbjct: 234 LAQ----LKGELQDDYHHLAQTADEEERQALFGLFDPVISALDAGQLPVEMLEYADRVY- 288

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               E P +L +Y+P  S L +D+          +   +            R+     + 
Sbjct: 289 ----EQPASLLDYLPAKSNLVLDDWGRIKEGAKRITEQETAWLMDKVAAKRRVRGATLDN 344

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            +         P T +     G  +++  Q  I +   R         E++   +Q++ +
Sbjct: 345 GVMETLPKRPGPQTYLALFQKGLGQVKLAQ--ISDLATR---------EMQRFFSQLDLL 393

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             E+     QG  +++   +      +   L +  + V     +             +L 
Sbjct: 394 KGELKRWQSQGATVVIMANSPERRNQVATTLADFGVAVVQTAPD-------------QLM 440

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVIL 688
           +  V +    L  G ++P   LV I +A+    +++     Q +    R     + K   
Sbjct: 441 EHQVQLVAATLANGFEMPPANLVVITEAEMFKQVKNCRPRAQKLANAERIKSYTDLKPGD 500

Query: 689 YADTITK 695
           Y   +  
Sbjct: 501 YVVHVNH 507



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 14/188 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L      + +  +    PTG       +      V  + D I    Q+
Sbjct: 770 VLTLTATPIPRTLHMSMMGVRDLSVLETPPTGRYPIQTYVLEQNGAV--IRDGILREMQR 827

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E +   L E     R  Y+H ++   E   ++ D   G++DVLV  
Sbjct: 828 GGQVYYLHNRVHDIERVVAQLAELVPEARIGYIHGQMSENELEGVLYDFIRGEYDVLVTT 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +++  G+DI     + + DAD+ G  +    L Q  GR  R+     + YA  + +  ++
Sbjct: 888 SIIETGVDIANVNTLFVEDADRLGLAQ----LYQIRGRIGRSNR---VAYAYFMYQENKV 940

Query: 700 AIDETTRR 707
             ++  +R
Sbjct: 941 LTEQGEKR 948


>gi|227522403|ref|ZP_03952452.1| transcription-repair coupling factor [Lactobacillus hilgardii ATCC
           8290]
 gi|227090461|gb|EEI25773.1| transcription-repair coupling factor [Lactobacillus hilgardii ATCC
           8290]
          Length = 1168

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 87/512 (16%), Positives = 197/512 (38%), Gaps = 57/512 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             Q+   + +  + QL+ G++GS +T  +  +++   RP +V+      A QL S+F N 
Sbjct: 4   FTQIASSLKADSR-QLITGISGSARTLLIDNLLKTTTRPVVVVVDTLFHADQLVSDFSNL 62

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  F             P  +    + ++ + +    R  A   L+     ++V+
Sbjct: 63  LEDDQIFEF-------------PVEEMGAAELATSSPEYKAQRVLALNKLISGEPAVIVT 109

Query: 277 SVSCIYGI-GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           SVS +  +  S + +S   + + +    + ++L   L +  Y  Q +    G F + G  
Sbjct: 110 SVSGLKRLLPSPDQFSDAELTIDMDSEYDLEKLKLKLHQMGYTFQKLVAAPGDFSIRGSI 169

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +++FP + +D   R+  F  +++ +  F     + I+ + TI+I   +  +         
Sbjct: 170 LDVFPLNNQD-PVRIDFFDTEVDSMRLFDVSNQRSIKTINTIQILPATDLLITDQQRQKV 228

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
                 ELK +L   + +     A+++   I   +  LE   +      ++         
Sbjct: 229 AG----ELKDQLASEKAKLDDESAKKINNAIEPQIMDLENGLNDPKWLLFANLFY----- 279

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           +   +L +Y+ +D ++  D+          +   D        +    LPS   N    F
Sbjct: 280 DQSNSLLDYLSDDGVVVFDDYSRITDSQRQLESDDDVWLTDKIKNHELLPS--TNYTNDF 337

Query: 516 EE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQVEDV 571
           ++ +   +  T+++S        ++  G +     R   +VD  + +R  +   +Q+  +
Sbjct: 338 KKIFKVNKKATLILSL------FQKGLGRM-----RLDAIVD--ITVRPMQQFFSQMPML 384

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             EI    +Q   +++ V  +   E + + L +  I         +T     ++  ++L 
Sbjct: 385 RTEIGRWQKQKQSVIIMVQDQNRMEKVAQTLSDFEIAA------TQTEMSAILLHQVQL- 437

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                     L  G ++P  GLV I + +  G
Sbjct: 438 ------VHGNLENGFELPIAGLVVITEKEMFG 463



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I     +G 
Sbjct: 761 VLTLTATPIPRTLNMSMMGVRDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMARGG 820

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E     R  Y+H ++   +  +I+ D   G++DVLV   +
Sbjct: 821 QVFYLHNRVADIEKTVSQLSELVPDARIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTI 880

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G L     L   IGR++R      + YA  + +  ++  
Sbjct: 881 IETGVDIPNVNTLFVENADHMG-LSQLYQLRGRIGRSSR------VAYAYFMYQPNKVLT 933

Query: 702 DETTRRRE 709
           +   +R E
Sbjct: 934 EIGEKRLE 941


>gi|325568171|ref|ZP_08144612.1| transcription-repair coupling factor [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158372|gb|EGC70523.1| transcription-repair coupling factor [Enterococcus casseliflavus
           ATCC 12755]
          Length = 1172

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 89/526 (16%), Positives = 189/526 (35%), Gaps = 61/526 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +A    G+  +   QLL G+ GS KT  +  V +A Q+  IV+ PN     QL  + +N 
Sbjct: 13  VAAWHAGLREQAPRQLLTGLAGSAKTLAITGVYQAFQKQVIVVTPNLYYTNQLAEDLRNV 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V                P  +    + +  + +    R +A  ++ +    I V 
Sbjct: 73  TDDVYV---------------FPVDEVLSAEMAFSSPEAREERVAALNAVSQGKTGIYVL 117

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +   +++     Q +IGD ++ + L   L+   Y+RQ +    G F + G  
Sbjct: 118 PVAALRKYLPEKKTWLANQFQWQIGDEIDLERLPQQLILMGYERQSMIGKPGEFSIRGSI 177

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P + E    R+ +F  +I+ +  F   T + +  ++ + I   +  V     L   
Sbjct: 178 LDIYPLNAE-YPVRIELFDVEIDSMRSFNVETQRSVETLQQVAILPTTELVFSAEDLAAG 236

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
            K ++E L  RL   ++         LE          +     +S   Y+  L  +   
Sbjct: 237 QKQLQELLNKRLAVTKEVTD---RAFLEDYFGQLASQWQAGIPGESARYYTDLLYRQQ-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
               ++ +Y  ED+ L +D+    +     + R +                  + R    
Sbjct: 292 ---TSVLDYFSEDAFLMIDDYARIMETNREIEREEAEWHTQKL---------AELRVFSE 339

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSAR---TQVE 569
           +++       +                 + ++    IR   +       R  +   +Q+ 
Sbjct: 340 QQFGIDVHQLL------QKETFVTSFFSLFQKGMGNIRFQAIHQFQY--RPMQQFFSQMG 391

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +  EI+   +Q   ++  V  +  A+ L + L + +I                    L 
Sbjct: 392 LLKVEIDRWEKQQQTVIFLVSDQERAKKLEQDLRDHDIYAV-----------QTQQDRLF 440

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            G+  ++V    L+ G ++P+  LV + + +    +  K +  Q +
Sbjct: 441 TGRTQIVV--ERLQSGFEMPQDKLVVVTEKEIFQKMNKKRARRQNV 484



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 75/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          V 
Sbjct: 759 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMEMNPGAVR 818

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +G ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 819 EAIQREMARGGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEIQLENTLFDFIE 878

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++DVLV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 879 GQYDVLVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 934

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 935 YEQ----QKVLNEVSEKRLQAIK 953


>gi|257877903|ref|ZP_05657556.1| transcription-repair coupling factor [Enterococcus casseliflavus
           EC20]
 gi|257812069|gb|EEV40889.1| transcription-repair coupling factor [Enterococcus casseliflavus
           EC20]
          Length = 1172

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 89/526 (16%), Positives = 190/526 (36%), Gaps = 61/526 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +A    G+  +   QLL G+ GS KT  +  V +A Q+  IV+ PN     QL  + +N 
Sbjct: 13  VAAWHTGLREQAPRQLLTGLAGSAKTLAITGVYQAFQKQVIVVTPNLYYTNQLAEDLRNV 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V                P  +    + +  + +    R +A  ++ +    I V 
Sbjct: 73  TEDVYV---------------FPVDEVLSAEMAFSSPEAREERVAALNAVSQGKTGIYVL 117

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +   +++     Q +IGD ++ + L   L+   Y+RQ +    G F + G  
Sbjct: 118 PVAALRKYLPEKKTWLANQFQWQIGDEIDLERLPQQLILMGYERQSMIGKPGEFSIRGSI 177

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P + E    R+ +F  +I+ +  F   T + +  ++ + I   +  V     L + 
Sbjct: 178 LDIYPLNAE-YPVRIELFDVEIDSMRSFNVETQRSVETLQQVAILPTTELVFSAEDLASG 236

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
            K ++E L  RL   ++         LE          +     +S   Y+  L  +   
Sbjct: 237 QKQLQELLNKRLAVTKEATD---RAFLEDYFGQLASQWQAGIPGESARYYTDLLYRQQ-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
               ++ +Y  ED+ L +D+    +     + R +                  + R    
Sbjct: 292 ---TSVLDYFSEDAFLMIDDYARIMETNREIEREEAEWHTQKL---------AELRVFSE 339

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSAR---TQVE 569
           +++       +                 + ++    IR   +       R  +   +Q+ 
Sbjct: 340 QQFGIDVHQLL------QKETFVTSFFSLFQKGMGNIRFQAIHQFQY--RPMQQFFSQMG 391

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +  EI+   +Q   ++  V  +  A+ L + L + +I                    L 
Sbjct: 392 LLKVEIDRWEKQQQTVIFLVSDQERAKKLEQDLRDHDIYAV-----------QTQQDRLF 440

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            G+  ++V    L+ G ++P+  LV + + +    +  K +  Q +
Sbjct: 441 TGRTQIVV--ERLQSGFEMPQDKLVVVTEKEIFQKMNKKRARRQNV 484



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 75/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          V 
Sbjct: 759 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMEMNPGAVR 818

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +G ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 819 EAIQREMARGGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEIQLENTLFDFIE 878

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++DVLV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 879 GQYDVLVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 934

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 935 YEQ----QKVLNEVSEKRLQAIK 953


>gi|256848382|ref|ZP_05553825.1| transcription-repair coupling factor [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714980|gb|EEU29958.1| transcription-repair coupling factor [Lactobacillus coleohominis
           101-4-CHN]
          Length = 1179

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 91/538 (16%), Positives = 197/538 (36%), Gaps = 68/538 (12%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             ++  G+H   + QL+ GV GS KT  +A + +  + P +V+  +      L ++ +N 
Sbjct: 13  FKKIQAGLHDGGR-QLVTGVGGSAKTALLATIQQNSKTPQVVVCDSLFHMQSLAADLENL 71

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P   V  F             P  ++   + ++ +      R  A  +LL     ++V+
Sbjct: 72  LPETVVYQF-------------PVEESLAMEIATSSPDFRLQRVQAMNALLNGQSAVIVT 118

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +   +   + + E++S   +++KIG  ++ ++    L+   Y+RQ + +  G F V G  
Sbjct: 119 ATGGLRRPLVAPETFSDARLEIKIGGEIDPQQTAQKLMMMGYQRQKMVMAPGDFAVRGSI 178

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+ +       R+ +F  +++ +  F   + + I NV+ + +   +  +  +  L   
Sbjct: 179 IDIY-ALNTKYPVRIDLFDTEVDSLRYFEANSQRSIENVQAVTVLPATDLIIDQQRLPAL 237

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQR-LEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
            + +  E +     L ++    +  R +E      LE L+       +  Y+  +     
Sbjct: 238 QQQLTTEYET----LHEQASDEQDARQIENHFRPLLEGLKAGNLENGLLTYADMVYP--- 290

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
              P  L +Y+P D  L VD+          +   +         Y              
Sbjct: 291 --QPANLLDYLPADGTLIVDDFSRIKETDRDLKTDEQQWVQERMSY-------------- 334

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQG--IIVEQIIRPTGLVDPPVEI----RSAR--- 565
                  +   +          +   Q   + +    +  G +     +    RS +   
Sbjct: 335 ------HQRQNVGKLGNDADEVITHAQQAALFLALFKKGMGALRFKQIVELTTRSMQQFF 388

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            Q+E +  E+    +QG  +++   +      + + L +  +                  
Sbjct: 389 GQMELLKTELQRFKEQGETVVIMTKSDERRRQVAQTLQDFQVDAL-----------ETDF 437

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            DL+L K + LV  N L  G ++P   LV I +A+    ++ +    Q +  A R  N
Sbjct: 438 ADLQLHKIE-LVAAN-LNHGFEMPAAQLVVITEAEMFKQVKKRRPRAQKLANAERIKN 493



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 66/174 (37%), Gaps = 7/174 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++    +   P++          + D I    ++G 
Sbjct: 771 VLTLTATPIPRTLHMSMLGVRDLSVLETPPVGRFPIQTYVLEQNWSAIRDGILREMKRGG 830

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E +   +       R   +H ++   +   ++ D   G++DVLV  ++
Sbjct: 831 QVYYLHNRVNDIERVVNEIETLVPEARVADIHGQMSEAQLEGVLYDFIRGEYDVLVTTSI 890

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  G+DIP    + + +AD+ G  +    L Q  GR  R+       +     K
Sbjct: 891 IETGVDIPNVNTLFVENADRMGLAQ----LYQIRGRIGRSNRVAYAYFMYQPNK 940


>gi|257868298|ref|ZP_05647951.1| transcription-repair coupling factor [Enterococcus casseliflavus
           EC30]
 gi|257874429|ref|ZP_05654082.1| transcription-repair coupling factor [Enterococcus casseliflavus
           EC10]
 gi|257802412|gb|EEV31284.1| transcription-repair coupling factor [Enterococcus casseliflavus
           EC30]
 gi|257808593|gb|EEV37415.1| transcription-repair coupling factor [Enterococcus casseliflavus
           EC10]
          Length = 1172

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 89/526 (16%), Positives = 190/526 (36%), Gaps = 61/526 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +A    G+  +   QLL G+ GS KT  +  V +A Q+  IV+ PN     QL  + +N 
Sbjct: 13  VAAWHTGLREQAPRQLLTGLAGSAKTLAITGVYQAFQKQVIVVTPNLYYTNQLAEDLRNV 72

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V                P  +    + +  + +    R +A  ++ +    I V 
Sbjct: 73  TEDVYV---------------FPVDEVLSAEMAFSSPEAREERVAALNAVSQGKTGIYVL 117

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +   +   +++     Q +IGD ++ + L   L+   Y+RQ +    G F + G  
Sbjct: 118 PVAALRKYLPEKKTWLANQFQWQIGDEIDLERLPQQLILMGYERQSMIGKPGEFSIRGSI 177

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P + E    R+ +F  +I+ +  F   T + +  ++ + I   +  V     L   
Sbjct: 178 LDIYPLNAE-YPVRIELFDVEIDSMRSFNVETQRSVETLQQVAILPTTELVFSAEDLAAG 236

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
            K ++E L  RL   ++         LE      +   +     +S   Y+  L  +   
Sbjct: 237 QKQLQELLNKRLAVTKEATD---RAFLEDYFGQLVSQWQAGIPGESARYYTDLLYRQQ-- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
               ++ +Y  ED+ L +D+    +     + R +                  + R    
Sbjct: 292 ---TSVLDYFSEDAFLMIDDYARIMETNREIEREEAEWHTQKL---------AELRVFSE 339

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSAR---TQVE 569
           +++       +                 + ++    IR   +       R  +   +Q+ 
Sbjct: 340 QQFGIDVHQLL------QKETFVTSFFSLFQKGMGNIRFQAIHQFQY--RPMQQFFSQMG 391

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +  EI+   +Q   ++  V  +  A+ L + L + +I                    L 
Sbjct: 392 LLKVEIDRWEKQQQTVIFLVSDQERAKKLEQDLRDHDIYAV-----------QTQQDRLF 440

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            G+  ++V    L+ G ++P+  LV + + +    +  K +  Q +
Sbjct: 441 TGRTQIVV--ERLQSGFEMPQDKLVVVTEKEIFQKMNKKRARRQNV 484



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 75/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++          V 
Sbjct: 759 ERLKQLRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMEMNPGAVR 818

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +G ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 819 EAIQREMARGGQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEIQLENTLFDFIE 878

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++DVLV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 879 GQYDVLVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 934

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  ++E + +R + ++
Sbjct: 935 YEQ----QKVLNEVSEKRLQAIK 953


>gi|229917410|ref|YP_002886056.1| transcription-repair coupling factor [Exiguobacterium sp. AT1b]
 gi|229468839|gb|ACQ70611.1| transcription-repair coupling factor [Exiguobacterium sp. AT1b]
          Length = 1175

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 95/514 (18%), Positives = 192/514 (37%), Gaps = 59/514 (11%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
            +   QL+ G+T S K   +A ++++  R  +V+  N   A +++ + ++    +    +
Sbjct: 22  QKVDRQLVTGLTTSAKALVLAGLVKSSSRRLVVVTHNMYQAQKMFDQLESLIGPDKTLLY 81

Query: 226 VSYYDYYQPEAYVPRTDTYIEKES-SINEQIDRMRHSA-TRSLLERNDCIVVSSVSCIYG 283
                        P  +T   + S + + ++   R  A TR L +    +VV        
Sbjct: 82  -------------PIDETLAGELSLTSSPELLAARIDARTRLLDQTGGVVVVPLGGLRRY 128

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           + S E++    V LK G  ++  +    L    Y+R       G F V G  ++++P   
Sbjct: 129 VPSPEAWQDSRVMLKPGSDLDLADFAKQLTGMGYERTATVTTPGEFSVRGSILDVYPL-T 187

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+ +F  +I+ I  F   T + +  V  + I   + ++     L  A   ++++ 
Sbjct: 188 EARPYRIDLFDTEIDSIFTFDAETQRSLGVVGEVCITPATEFIATENQLKQAGGALRKQY 247

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
              +   E  G  +  Q LE+ +  D+E LE     + +  YS  L          TL +
Sbjct: 248 DRTV---ELIGNEVIRQALEEGVVTDIERLERGDLPEKVGKYSPLLY-------TSTLLD 297

Query: 464 YIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP 523
           Y+ +D++L +DE            R +    ++L E G  + +     P+  + +  L+ 
Sbjct: 298 YVGKDAVLILDEVARIDDAADVQDREEAEWFSSLIEKGEAVSNYTLAVPM-HKVFRDLKQ 356

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS---ARTQVEDVYDEINLAAQ 580
             +  S  P      +      + +             R       Q+  +  E+    Q
Sbjct: 357 --VAFSLLPS----RRSGIPESDTVHLSC---------RPLPAFHGQMHLLKQEVERWQQ 401

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
              RI++    K  A+ +   L +  I   + + + +   R             V V I 
Sbjct: 402 GDQRIVVLAGDKSRADKIEALLSDYGIASTFTNVDGELEPRR------------VSVIIG 449

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
            +  G ++    LV +  +++E F R      QT
Sbjct: 450 QIEGGFELSTSRLVVV--SEEELFKRVTKRKRQT 481



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 66/185 (35%), Gaps = 15/185 (8%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     GI    ++        PV+  +      V  + + +     +
Sbjct: 770 VLTLTATPIPRTLHMSMIGIRDLSVLETPPENRYPVQTYVMEYDGIV--LREALERELAR 827

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +           +R AE++   L +  I     H  +   E    +     G+ D+LV
Sbjct: 828 GGQAFFLYNRVEGIERKAEEIRALLPDARIATA--HGRMTESELESQLISFLEGEADILV 885

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + + DADK G  +    L Q  GR  R+       +     K +
Sbjct: 886 STTIIETGIDIPNVNTLIVHDADKMGLSQ----LYQLRGRVGRSNRIAYAYFTYRKDKRL 941

Query: 698 QLAID 702
               +
Sbjct: 942 TEVAE 946



 Score = 38.2 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKT-FTMA 186
           ++     +++  F+    Y  + DQ  +IA++   +  SR   +LL G  G GKT   + 
Sbjct: 600 FAFPPDDEEMGQFESSFPYAETEDQVRSIAEIKADMERSRPMDRLLCGDVGYGKTEVAIR 659

Query: 187 KVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPH 219
              +A+   +    + P  +LA Q Y      F  
Sbjct: 660 AAFKAVLAGKQVAFLVPTTVLAQQHYETMLERFSE 694


>gi|239630377|ref|ZP_04673408.1| transcription-repair coupling factor [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239526660|gb|EEQ65661.1| transcription-repair coupling factor [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 1174

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 85/526 (16%), Positives = 189/526 (35%), Gaps = 70/526 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           +    L+ G++GS KT     +++   +  +++  N+  A +L ++  +      V  F 
Sbjct: 21  KTGRHLVTGLSGSAKTVFFGALLQQRPQQILIVENNRFHADELAADLSSLLGDAVVYDF- 79

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI-G 285
                       P  D    + +  + +    R +A   +      I+V+S++    +  
Sbjct: 80  ------------PVEDVLAAEVAVSSPETRNDRINALTFIQSGKPGIIVTSLAGYKRLLP 127

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           S   ++   + + +   ++ + +   LV   Y+R  +    G F + G  I+++P + +D
Sbjct: 128 SPADWAASELAIDMTSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDVYPLNQDD 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I  F   T + ++ ++ I I   +  V     L  A + I ++   
Sbjct: 188 -PIRIELFDTEIDSIRSFDIATQRSLQKLQQITIAPATDMVATDQVLAAAGERITKQANA 246

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
              +++                  L   +   + +  EN + Y     P +   +  +Y+
Sbjct: 247 YKAKVKNAAAKQAV------TDGLLTTGQQLSAHERPENLALYAAELYPEQQRIS--DYL 298

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS----------CMDNRP-LR 514
             D+L+  D+    +   + + +      + L E G  LPS            D RP L 
Sbjct: 299 QPDALVAFDDYSRLLDSDTTLVQDTAEWYSQLQEEGRLLPSTPNLTIQELAQQDKRPRLY 358

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
              +        + S T             V+Q                  +Q+  +  E
Sbjct: 359 LSLFQKGMGQLRLDSLTNIP-------SRNVQQF----------------FSQMPLLKTE 395

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            +   +Q   ++  +  K   E L+E L +  I      S V T     +   ++L +  
Sbjct: 396 TDRWVKQQQTVVFLITDKNRLEKLSETLSDFEI------SNVMTAPTKLLPSQVQLTE-- 447

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
                  L+ G ++P+  LV + + +     + + +  QT+    R
Sbjct: 448 -----GSLKNGFELPDLKLVVVTEHELFNARQRRHARHQTLANTER 488



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I    ++G 
Sbjct: 769 VLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGG 828

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E   +  V Y H ++   +   +I D   G +DVLV   +
Sbjct: 829 QVFYLHNRVEDMERTVSQLEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTI 888

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I +AD  G L     L   IGR++R      + YA  + + +   +
Sbjct: 889 IETGVDMPNANTLIIENADHYG-LSQLYQLRGRIGRSSR------VAYAYFMYQPM-KVL 940

Query: 702 DETTRRREKQLE 713
           +E   +R + ++
Sbjct: 941 NEVAEKRLQAIK 952


>gi|301067528|ref|YP_003789551.1| transcription-repair coupling factor (superfamily II helicase)
           [Lactobacillus casei str. Zhang]
 gi|300439935|gb|ADK19701.1| Transcription-repair coupling factor (superfamily II helicase)
           [Lactobacillus casei str. Zhang]
          Length = 1174

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 85/526 (16%), Positives = 189/526 (35%), Gaps = 70/526 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           +    L+ G++GS KT     +++   +  +++  N+  A +L ++  +      V  F 
Sbjct: 21  KTGRHLVTGLSGSAKTVFFGALLQQRPQQILIVENNRFHADELAADLSSLLGDAVVYDF- 79

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI-G 285
                       P  D    + +  + +    R +A   +      I+V+S++    +  
Sbjct: 80  ------------PVEDVLAAEVAVSSPETRNDRINALTFIQSGKPGIIVTSLAGYKRLLP 127

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           S   ++   + + +   ++ + +   LV   Y+R  +    G F + G  I+++P + +D
Sbjct: 128 SPADWAASELAIDMTSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDVYPLNQDD 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I  F   T + ++ ++ I I   +  V     L  A + I ++   
Sbjct: 188 -PIRIELFDTEIDSIRSFDIATQRSLQKLQQITIAPATDMVATDQVLAAAGERITKQANA 246

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
              +++                  L   +   + +  EN + Y     P +   +  +Y+
Sbjct: 247 YKAKVKNAAAKQAV------TDGLLTTGQQLSAHERPENLALYAAELYPEQQRIS--DYL 298

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS----------CMDNRP-LR 514
             D+L+  D+    +   + + +      + L E G  LPS            D RP L 
Sbjct: 299 QPDALVAFDDYSRLLDSDTTLVQDTAEWYSQLQEEGRLLPSTPNLTIQELAQQDKRPRLY 358

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
              +        + S T             V+Q                  +Q+  +  E
Sbjct: 359 LSLFQKGMGQLRLDSLTNIP-------SRNVQQF----------------FSQMPLLKTE 395

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            +   +Q   ++  +  K   E L+E L +  I      S V T     +   ++L +  
Sbjct: 396 TDRWVKQQQTVVFLITDKNRLEKLSETLSDFEI------SNVMTAPTKLLPSQVQLTE-- 447

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
                  L+ G ++P+  LV + + +     + + +  QT+    R
Sbjct: 448 -----GSLKNGFELPDLKLVVVTEHELFNARQRRHARHQTLANTER 488



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I    ++G 
Sbjct: 769 VLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGG 828

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E   +  V Y H ++   +   +I D   G +DVLV   +
Sbjct: 829 QVFYLHNRVEDMERTVSQLEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTI 888

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I +AD  G L     L   IGR++R      + YA  + + +   +
Sbjct: 889 IETGVDMPNANTLIIENADHYG-LSQLYQLRGRIGRSSR------VAYAYFMYQPM-KVL 940

Query: 702 DETTRRREKQLE 713
           +E   +R + ++
Sbjct: 941 NEVAEKRLQAIK 952


>gi|315640551|ref|ZP_07895659.1| transcription-repair coupling factor [Enterococcus italicus DSM
           15952]
 gi|315483755|gb|EFU74243.1| transcription-repair coupling factor [Enterococcus italicus DSM
           15952]
          Length = 1179

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 80/540 (14%), Positives = 185/540 (34%), Gaps = 58/540 (10%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +   ++     P       + + L+ +      QL+ G+ GS K   +    + +++  +
Sbjct: 1   MNIVELVQKTEP-------VEKWLRQLQEGLSRQLITGLAGSAKNLAIVGAFQKLEQSVV 53

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+ PN   A QL  + ++      V  F             P  +    + +  +     
Sbjct: 54  VVVPNLYYANQLAEDLRHV--QEQVYVF-------------PVDEVLSAEMAFASADAKA 98

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            R +   ++      I +  V+ +   +   +++    + + + D ++ ++L    V+  
Sbjct: 99  ERVATLTAIAAEERGIYILPVAALRKRLPKKQTWQNAQLSIALEDELDLEQLPKKFVQMG 158

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           + RQ +    G F + G  ++I+P + +    R+ +F  +++ I  F   T + +  VE 
Sbjct: 159 FVRQAMIEKPGDFSIRGSIVDIYPLN-QVHPVRIELFDVEVDSIRYFDAQTQRSLEQVEK 217

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           I I   +  +          + ++E L+ RL   + E    E   L       ++  +  
Sbjct: 218 IAIQPTTELIFAPEDFEHGKETLREMLEKRLAVTQDE---TERAFLTDYFGQLMQSWDEG 274

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
            +    + Y+  L          T+ +Y  +   L VD+    +     + R +      
Sbjct: 275 IAGDQPQFYTDMLYK-----DTVTVMDYFTDSYYLMVDDYARIMETNREIEREEGEWHTQ 329

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNC-LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
             E   RL +           +     PTT       G   L       ++   RP    
Sbjct: 330 KIE-ELRLFADQTLGYDVHAFFQKTHVPTTFFALFQKGMGNLRFQAIETIQ--YRPMQQF 386

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
                      Q+  +  E++   +Q   ++  V +    + L +   + +I       +
Sbjct: 387 F---------GQMGLLKAEVDRWEKQAQTVVFVVQSAEQQKKLEQEFRDHDIYAVQTTPD 437

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
              L R +II                L+ G ++P   +V + + +    +  + +  QT+
Sbjct: 438 RLFLGRSQIIH-------------GTLQAGFELPHDQVVVVTEREIFQKVAKRRARRQTV 484



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 75/203 (36%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L     G+    +I        P++     +    + 
Sbjct: 759 ERLKELRSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMESNPGAIR 818

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +G ++          E   E L       R  Y H ++  ++    + D   
Sbjct: 819 EAILREMARGGQVFYLYNRVDTIERKVEELQMLVPDARIGYAHGQMTEIQLENTLFDFIE 878

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G     ++L Q  GR  R+       + 
Sbjct: 879 GEYDILVTTTIIETGVDIPNANTLFVENADYMGL----STLYQLRGRVGRSNRVAYAYFM 934

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                  Q  + E + +R + ++
Sbjct: 935 YEP----QKILTEVSEKRLQAIK 953


>gi|191639457|ref|YP_001988623.1| Transcription-repair coupling factor (TRCF) [Lactobacillus casei
           BL23]
 gi|190713759|emb|CAQ67765.1| Transcription-repair coupling factor (TRCF) [Lactobacillus casei
           BL23]
 gi|205270976|emb|CAP07849.1| transcriptional-repair coupling factor [Lactobacillus casei BL23]
 gi|327383550|gb|AEA55026.1| Transcription-repair coupling factor [Lactobacillus casei LC2W]
 gi|327386742|gb|AEA58216.1| Transcription-repair coupling factor [Lactobacillus casei BD-II]
          Length = 1174

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 84/526 (15%), Positives = 189/526 (35%), Gaps = 70/526 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           +    L+ G++GS KT     +++   +  +++  N+  A +L ++  +      V  F 
Sbjct: 21  KTGRHLVTGLSGSAKTVFFGALLQQRPQQILIVENNRFHADELAADLSSLLGDAVVYDF- 79

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI-G 285
                       P  D    + +  + +    R +A   +      I+V+S++    +  
Sbjct: 80  ------------PVEDVLAAEVAVSSPETRNDRINALTFIQSGKPGIIVTSLAGYKRLLP 127

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           S   ++   + + +   ++ + +   LV   Y+R  +    G F + G  I+++P + +D
Sbjct: 128 SPADWTASELAIDMTSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDVYPLNQDD 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I  F   T + ++ ++ I I   +  V     L  A + I ++   
Sbjct: 188 -PIRIELFDTEIDSIRSFDIATQRSLQKLQQITIAPATDMVATDQVLAAAGERITKQANA 246

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
              +++                  L   +   + +  EN + Y     P +   +  +Y+
Sbjct: 247 YKAKVKNAAAKQAV------TDGLLTTGQQLSAHERPENLALYAAELYPEQQRIS--DYL 298

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP----------SCMDNRP-LR 514
             D+L+  D+    +   + + +      + L E G  LP          +  D RP L 
Sbjct: 299 QPDALVAFDDYSRLLDSDTTLVQDTAEWYSQLQEEGRLLPNTPNLTIQELAQQDKRPRLY 358

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
              +        + S T             V+Q                  +Q+  +  E
Sbjct: 359 LSLFQKGMGQLRLDSLTNIP-------SRNVQQF----------------FSQMPLLKTE 395

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            +   +Q   ++  +  K   E L+E L +  I      S V T     +   ++L +  
Sbjct: 396 TDRWVKQQQTVVFLITDKNRLEKLSETLSDFEI------SNVMTAPTKLLPSQVQLTE-- 447

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
                  L+ G ++P+  LV + + +     + + +  QT+    R
Sbjct: 448 -----GSLKNGFELPDLKLVVVTEHELFNARQRRHARHQTLANTER 488



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 78/198 (39%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I    ++G 
Sbjct: 769 VLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGG 828

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E   +  V Y H ++   +   +I D   G +DVLV   +
Sbjct: 829 QVFYLHNRVEDMERTVSQLEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTI 888

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I +AD  G L     L   IGR++R      + YA  + + +   +
Sbjct: 889 IETGVDMPNANTLIIENADHYG-LSQLYQLRGRIGRSSR------VAYAYFMYQPM-KVL 940

Query: 702 DETTRRREKQLEHNKKHN 719
           +E   +R + +++  +  
Sbjct: 941 NEVAEKRLQAIKNFTELG 958


>gi|260221136|emb|CBA29400.1| hypothetical protein Csp_A11950 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 199

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 91/139 (65%), Positives = 111/139 (79%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           + F++   Y P+GDQP AI+QL+ G+   E  Q LLGVTGSGKTFTMA VI  + RPAIV
Sbjct: 45  SPFELYQPYPPAGDQPEAISQLVSGVEDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIV 104

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
            APNK LAAQLYSEF+ FFP NAVEYFVSYYDYYQPEAYVP+ D +IEK+S+INE I++M
Sbjct: 105 FAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQM 164

Query: 259 RHSATRSLLERNDCIVVSS 277
           R S T+SLLER D ++V++
Sbjct: 165 RLSCTKSLLERRDVVIVAT 183


>gi|227533044|ref|ZP_03963093.1| transcription-repair coupling factor (TRCF) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227189445|gb|EEI69512.1| transcription-repair coupling factor (TRCF) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 1174

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 84/526 (15%), Positives = 189/526 (35%), Gaps = 70/526 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           +    L+ G++GS KT     +++   +  +++  N+  A +L ++  +      V  F 
Sbjct: 21  KTGRHLVTGLSGSAKTVFFGALLQQRPQQILIVENNRFHADELAADLSSLLGDAVVYDF- 79

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI-G 285
                       P  D    + +  + +    R +A   +      I+V+S++    +  
Sbjct: 80  ------------PVEDVLAAEVAVSSPETRNDRINALTFIQSGKPGIIVTSLAGYKRLLP 127

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           S   ++   + + +   ++ + +   LV   Y+R  +    G F + G  I+++P + +D
Sbjct: 128 SPADWAASELAIDMTSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDVYPLNQDD 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I  F   T + ++ ++ I I   +  V     L  A + I ++   
Sbjct: 188 -PIRIELFDTEIDSIRSFDIATQRSLQKLQQITIAPATDMVATDQVLAAAGERITKQANA 246

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
              +++                  L   +   + +  EN + Y     P +   +  +Y+
Sbjct: 247 YKAKVKNAAAKQAV------TDGLLTTGQQLSAHERPENLALYAAELYPEQQRIS--DYL 298

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP----------SCMDNRP-LR 514
             D+L+  D+    +   + + +      + L E G  LP          +  D RP L 
Sbjct: 299 QPDALVAFDDYSRLLDSDTTLVQDTAEWYSQLQEEGRLLPNTPNLTIQELAQQDKRPRLY 358

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
              +        + S T             V+Q                  +Q+  +  E
Sbjct: 359 LSLFQKGMGQLRLDSLTNIP-------SRNVQQF----------------FSQMPLLKTE 395

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            +   +Q   ++  +  K   E L+E L +  I      S V T     +   ++L +  
Sbjct: 396 TDRWVKQQQTVVFLITDKNRLEKLSETLSDFEI------SNVMTAPTKLLPSQVQLTE-- 447

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
                  L+ G ++P+  LV + + +     + + +  QT+    R
Sbjct: 448 -----GSLKNGFELPDLKLVVVTEHELFNARQRRHARHQTLANTER 488



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I    ++G 
Sbjct: 769 VLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGG 828

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E   +  V Y H ++   +   +I D   G +DVLV   +
Sbjct: 829 QVFYLHNRVEDMERTVSQLEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTI 888

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I +AD  G L     L   IGR++R      + YA  + + +   +
Sbjct: 889 IETGVDMPNANTLIIENADHYG-LSQLYQLRGRIGRSSR------VAYAYFMYQPM-KVL 940

Query: 702 DETTRRREKQLE 713
           +E   +R + ++
Sbjct: 941 NEVAEKRLQAIK 952


>gi|227512317|ref|ZP_03942366.1| transcription-repair coupling factor [Lactobacillus buchneri ATCC
           11577]
 gi|227084492|gb|EEI19804.1| transcription-repair coupling factor [Lactobacillus buchneri ATCC
           11577]
          Length = 1168

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 86/512 (16%), Positives = 197/512 (38%), Gaps = 57/512 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             Q+   + +  + QL+ G++GS +T  +  +++   RP +V+      A QL S+F N 
Sbjct: 4   FTQIASSLKADSR-QLITGISGSARTLLIDNLLKTTTRPVVVVVDTLFHADQLVSDFSNL 62

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  F             P  +    + ++ + +    R  A   L+     ++V+
Sbjct: 63  LEDDQIFEF-------------PVEEMGAAELATSSPEYKAQRVLALNKLISGEPAVIVT 109

Query: 277 SVSCIYGI-GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           SVS +  +  S + +S   + + +    + ++L   L +  Y  Q +    G F + G  
Sbjct: 110 SVSGLKRLLPSPDQFSDAELTIDMDSEYDLEKLKLKLHQMGYTFQKLVAAPGDFSIRGSI 169

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +++FP + +D   R+  F  +++ +  F     + I+ + TI+I   +  +         
Sbjct: 170 LDVFPLNNQD-PVRIDFFDTEVDSMRLFDVSNQRSIKTINTIQILPATDLLITDQQRQKV 228

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
                 ELK +L   + +     A+++   I   +  LE   +      ++         
Sbjct: 229 AG----ELKDQLASEKAKLDDESAKKINNAIEPQIMDLENGLNDPKWLLFANLFY----- 279

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           +   +L +Y+ +D ++  D+          +   D        +    LPS   N    F
Sbjct: 280 DQSNSLLDYLSDDGVVVFDDYSRITDSQRQLESDDDVWLTDKIKNHELLPS--TNYTNDF 337

Query: 516 EE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQVEDV 571
           ++ +   +  T+++S        ++  G +     R   +VD  + +R  +   +Q+  +
Sbjct: 338 KKIFKVNKKATLILSL------FQKGLGRM-----RLDAIVD--ITVRPMQQFFSQMPML 384

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             EI    +Q   +++ V  +   + + + L +  I         +T     ++  ++L 
Sbjct: 385 RTEIGRWQKQKQSVIIMVQDQNRMQKVAQTLSDFEIAA------TQTDMSAILLHQVQL- 437

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                     L  G ++P  GLV I + +  G
Sbjct: 438 ------VHGNLENGFELPIAGLVVITEKEMFG 463



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I     +G 
Sbjct: 761 VLTLTATPIPRTLNMSMMGVRDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMARGG 820

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E     R  Y+H ++   +  +I+ D   G++DVLV   +
Sbjct: 821 QVFYLHNRVADIEKTVSQLSELVPDARIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTI 880

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G L     L   IGR++R      + YA  + +  ++  
Sbjct: 881 IETGVDIPNVNTLFVENADHMG-LSQLYQLRGRIGRSSR------VAYAYFMYQPNKVLT 933

Query: 702 DETTRRRE 709
           +   +R E
Sbjct: 934 EIGEKRLE 941


>gi|300172731|ref|YP_003771896.1| transcription-repair coupling factor [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887109|emb|CBL91077.1| transcription-repair coupling factor [Leuconostoc gasicomitatum LMG
           18811]
          Length = 1172

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 100/632 (15%), Positives = 220/632 (34%), Gaps = 78/632 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I  L +        QLLLGV GS +  ++A + EA  R  +V+   ++ A QL+SE
Sbjct: 8   QSDTIKHLNEQAADGS-SQLLLGVNGSARAASVAALYEANPRQMLVVTDTQVHADQLFSE 66

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +     +V  F             P  ++   + +  +  +   R ++  +L +    
Sbjct: 67  LSSLMT--SVFNF-------------PAEESLATEIAISSPDLRLQRVASLLALRKGEAK 111

Query: 273 IVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           ++V+S++ +  +    E+     + L +G + +  ++  +L+   Y    +    G F  
Sbjct: 112 VIVTSLAGVERLLPRPETVDAAKLSLTVGQTYQLNDIKKTLMMMGYTPTKLVQGAGEFAQ 171

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I+I+P   ++   R+  F ++++++  F   T +    ++   +   + ++     
Sbjct: 172 RGSIIDIYPLTSDE-PIRLDFFDDELDQLKNFDVSTQKSTTVLKKYHVQPATDFIVSETQ 230

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
            + A + I+        EL    +        +       +L   G    +  Y+ +   
Sbjct: 231 YDIAKQTIETAFNNYRKELTGVAKKHAT----EGFAATQHVLNEHGRVNQLLPYATHFFD 286

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
              GE   TL +Y  +D L+FVDE              D             +P  +   
Sbjct: 287 ---GET--TLLDYFSDDVLVFVDEFTRLKDMQIQQLTYDQEWLDKQLSTYQLIPGQVLR- 340

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP----PVEIRSAR-- 565
                ++  L                 +   I +    R    +       V  R A   
Sbjct: 341 ----ADFADLLTQ-------------NKSAVIYLANFQRGLNNIKFTNIEEVTTRPANQY 383

Query: 566 -TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q+E +  ++  A   G+ ++L +  ++ +  L+E L +  + +               
Sbjct: 384 YGQIETLRTDLQYAQDAGMTVILLINDEKQSHHLSESLSDFKVPI-------------IE 430

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---- 680
            R ++  +  ++     L  G + P+  L+ +   +     R      + I  A R    
Sbjct: 431 TRQVQPNQVQIM--KGNLAIGFEWPKLHLIVLTAHELFTQTRQVAPRQRKINNAERLKSY 488

Query: 681 ---NVNSKVILYADTITKS--IQLAIDETTRRREKQLEHNKKHNI-NPQSVKEKIMEVID 734
              NV   V+     I +   +Q    +  ++    + + K   I  P +    I + I 
Sbjct: 489 SELNVGDYVVHINHGIGRYEGLQTMTVDGGKQDYLSIAYQKNAKIFIPVTQLNLIQKYIG 548

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKS 766
                 A   N  +   + + +K++  A ++ 
Sbjct: 549 ASDAAKAPKLN-KLGGVEWAKTKRQVAAKIED 579



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G     II        P++          V + I     +G 
Sbjct: 768 VLTLTATPIPRTLNMAMVGARDLSIIETPPANRYPIQTYVLEADWIIVRNAIEKELARGG 827

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +           + +   + +     R   +H ++   +   ++ D   G +DVLV   +
Sbjct: 828 QAFYLHNRVADIDRVASQIEDLVPSARVGAIHGQMSETQLESVLYDFLNGNYDVLVTTTI 887

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G  +    L Q  GR  R+       +    +++     
Sbjct: 888 IETGVDIPNANTLIVENADHMGLSQ----LYQLRGRVGRSARLAYAYFTYPFSRTPS--- 940

Query: 702 DETTRRRE 709
           +E  +R E
Sbjct: 941 EEAEKRLE 948


>gi|116495978|ref|YP_807712.1| transcription-repair coupling factor [Lactobacillus casei ATCC 334]
 gi|116106128|gb|ABJ71270.1| transcription-repair coupling factor [Lactobacillus casei ATCC 334]
          Length = 1174

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 84/526 (15%), Positives = 189/526 (35%), Gaps = 70/526 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           +    L+ G++GS KT     +++   +  +++  N+  A +L ++  +      V  F 
Sbjct: 21  KTGRHLVTGLSGSAKTVFFGALLQQRPQQILIVENNRFHADELAADLSSLLGDAMVYDF- 79

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI-G 285
                       P  D    + +  + +    R +A   +      I+V+S++    +  
Sbjct: 80  ------------PVEDVLAAEVAVSSPETRNDRINALTFIQSGKPGIIVTSLAGYKRLLP 127

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           S   ++   + + +   ++ + +   LV   Y+R  +    G F + G  I+++P + +D
Sbjct: 128 SPADWAASELAIDMTSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDVYPLNQDD 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I  F   T + ++ ++ I I   +  V     L  A + I ++   
Sbjct: 188 -PIRIELFDTEIDSIRSFDIATQRSLQKLQQITIAPATDMVATDQVLAAAGERITKQANA 246

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
              +++                  L   +   + +  EN + Y     P +   +  +Y+
Sbjct: 247 YKAKVKNAAAKQAV------TDGLLTTGQQLSAHERPENLALYAAELYPEQQRIS--DYL 298

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP----------SCMDNRP-LR 514
             D+L+  D+    +   + + +      + L E G  LP          +  D RP L 
Sbjct: 299 QPDALVAFDDYSRLLDSDTTLVQDTAEWYSQLQEEGRLLPNTPNLTIQELAQQDKRPRLY 358

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
              +        + S T             V+Q                  +Q+  +  E
Sbjct: 359 LSLFQKGMGQLRLDSLTNIP-------SRNVQQF----------------FSQMPLLKTE 395

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            +   +Q   ++  +  K   E L+E L +  I      S V T     +   ++L +  
Sbjct: 396 TDRWVKQQQTVVFLITDKNRLEKLSETLSDFEI------SNVMTAPTKLLPSQVQLTE-- 447

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
                  L+ G ++P+  LV + + +     + + +  QT+    R
Sbjct: 448 -----GSLKNGFELPDLKLVVVTEHELFNARQRRHARHQTLANTER 488



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I    ++G 
Sbjct: 769 VLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGG 828

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E   +  V Y H ++   +   +I D   G +DVLV   +
Sbjct: 829 QVFYLHNRVEDMERTVSQLEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTI 888

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I +AD  G L     L   IGR++R      + YA  + + +   +
Sbjct: 889 IETGVDMPNANTLIIENADHYG-LSQLYQLRGRIGRSSR------VAYAYFMYQPM-KVL 940

Query: 702 DETTRRREKQLE 713
           +E   +R + ++
Sbjct: 941 NEVAEKRLQAIK 952


>gi|307244035|ref|ZP_07526154.1| transcription-repair coupling factor [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492559|gb|EFM64593.1| transcription-repair coupling factor [Peptostreptococcus stomatis
           DSM 17678]
          Length = 1134

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 82/499 (16%), Positives = 182/499 (36%), Gaps = 56/499 (11%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           + E    + G+    K   +  + +   R  + +A  +  A ++Y E   +         
Sbjct: 23  NGEGNIHISGLLPVSKPNMVYSIFKDSSRQVMYIANTEYEAKKIYDELSVYLNKKV---- 78

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGI 284
                      ++  TD       + + + D         LL++   I+V+SV  I    
Sbjct: 79  ----------EFLTTTDILFYHLDARDRKADARNLKTILRLLKKEKIILVTSVEAITRKY 128

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
              +     I +LK+G S++ ++L   LV   Y+R       G F + G  I++F     
Sbjct: 129 VPKKIILDNIFKLKVGQSMDMQDLARKLVDLGYQRVGKVEGFGQFSMRGGIIDVFTLMY- 187

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           +   R+  F ++I+ I EF   + + I   +++ I  +  ++ P   +  A++ I+ +L 
Sbjct: 188 NFPLRLEFFDDEIDSIREFDIYSQKSIDKFKSVTITPSRDFIYP-DNVGMAVEKIRADL- 245

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                         +   +  +  ++E +        +ENY  Y+          +LFEY
Sbjct: 246 --------------SDITDSDVFRNIEKIGAKEYFDGLENYIDYMYEGQD----KSLFEY 287

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           + +D+L+F+D+      +   ++     +     E G  +           +    +   
Sbjct: 288 LEDDALIFIDDISRYRERFKNIHSEFKDKYMLNLERGLAIKGQGKLLYSLSDSIYWMGDR 347

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            ++V++             + +  I+    +D   E+ S   +++   +++      G +
Sbjct: 348 KLIVNSLLNK--------PVNDMNIQHDFSIDTR-EVPSYSGRIDMFVEDVKRLRHAGYK 398

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   T   A+ L+  L + +I   Y              RDL +    V+V    + +
Sbjct: 399 LVIAAATNDRAKKLSNMLNDNDIDNIYTSK-----------RDLEIKTSQVVVLAANIGQ 447

Query: 645 GLDIPECGLVAILDADKEG 663
           G   P      I D +  G
Sbjct: 448 GFQYPSIKFQVITDREMLG 466



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 73/196 (37%), Gaps = 19/196 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-----VYDEINLAA 579
            + +SATP    L      I +  I    + +PP E     T V +     + DEI    
Sbjct: 767 VLTLSATPIPRTLHMSLSGIRDMSI----IEEPPQERYPVMTYVTEAKDSIIQDEIQREL 822

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +++   +     + +V   H  + + +    I      +FDVLV
Sbjct: 823 TRAGQVFFVYNRVEGIDEMAARIRRLVPDAKVGVAHGRMSSNQLENTILSFLSKEFDVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + I DADK G L     L   +GR+ R   + ++          
Sbjct: 883 CTTIIETGMDIANANTMIIYDADKMG-LSQLYQLRGRVGRSTRQGYAYLMY-------ER 934

Query: 698 QLAIDETTRRREKQLE 713
              + E   +R K ++
Sbjct: 935 NKVLSEVAEKRLKAIK 950



 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 8/163 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+ +  +  + DQ  AI    K +  S+   +L+ G  G GKT   +  + +A+   +  
Sbjct: 609 FEEKFPFQETDDQLKAIKDTKKDMESSKAMDRLICGDVGYGKTEVAIRAIFKAVMDGKQV 668

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
            V+ P  ILA Q Y+ F   F     EY +      + +    + D   + +  + + + 
Sbjct: 669 AVLVPTTILAQQHYNTFVERFE----EYPMRVEVLSRFKTAKQQKDIIKDAKKGLVDVLI 724

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
                 ++ +      +VV      +G+   ES  +M   + +
Sbjct: 725 GTHRIVSKDIDMPKLGLVVVDEEQRFGVRHKESLKKMKANVDV 767


>gi|118566776|gb|ABL01707.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 145

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 97/145 (66%), Positives = 119/145 (82%)

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
           PG++ELE+    +V+Q++RPTGL+DP +E+R   TQV+D+  EI   A    R+L+T LT
Sbjct: 1   PGNYELEKSGDEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 60

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           KRMAEDLTEYL E   RVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE 
Sbjct: 61  KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 120

Query: 652 GLVAILDADKEGFLRSKTSLIQTIG 676
            LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 121 SLVAILDADKEGFLRSERSLIQTIG 145


>gi|289808085|ref|ZP_06538714.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 127

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 83/127 (65%), Positives = 101/127 (79%)

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
           +GR PGEPPPTLF+Y+P D LL VDESHVTIPQI GMYRGD  RK TL EYGFRLPS +D
Sbjct: 1   SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 60

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           NRPL+FEE+  L P TI VSATPG++ELE+    +V+Q++RPTGL+DP +E+R   TQV+
Sbjct: 61  NRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLDPIIEVRPVATQVD 120

Query: 570 DVYDEIN 576
           D+  EI 
Sbjct: 121 DLLSEIR 127


>gi|116617523|ref|YP_817894.1| transcription-repair coupling factor [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116096370|gb|ABJ61521.1| transcription-repair coupling factor [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 1179

 Score =  193 bits (491), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 95/626 (15%), Positives = 208/626 (33%), Gaps = 73/626 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I +L +        QLLLGV G+ +  ++A +     RP ++++  ++ A Q + +  + 
Sbjct: 13  IKKLNEQATVGS-AQLLLGVNGTARAASIAALYRKNPRPMLIISDTQVHADQFFDDLSSL 71

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + V  F             P  ++   + +  + ++   R     +L      IVV+
Sbjct: 72  L-EDLVYNF-------------PAEESIATEMAISSSELRLQRVQTLLALKTEKPIIVVT 117

Query: 277 SVSCIYGIGSVE-SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           S++    +   + S  Q  + +K+GD+     + ++L+   Y    +    G F   G  
Sbjct: 118 SLAGAERLVPKKQSLEQAHLHVKVGDAYNLNVIKNTLMMMGYTPTKLVQTPGEFAHRGSI 177

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++++P   +D   R+  F ++++++  F   T +   + + I I   + ++      + A
Sbjct: 178 VDVYPITFDD-PIRLDFFDDELDQLKSFDVATQKSTTSFDEINIEPATDFIVSEHQYDQA 236

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              I+         L    +                ML        +  Y+ +       
Sbjct: 237 KLAIESAFSDYRTNLSGVDKKHATD----GFAPTQYMLNERERGSVLVPYAPFFFDGQ-- 290

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
               TL +Y P DSL+ +DE    +         D        E    LP       +  
Sbjct: 291 ---TTLLDYFPTDSLIIIDEYTRLMETRLQQMTRDQEWIEQQIEAYQLLPKQTWRTEIT- 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQVEDVY 572
           +     +  TI +                   + R        V  R A     Q+  + 
Sbjct: 347 DLLASNQHATIYL-------------ANFQRGLNRIKFTNVEEVTTRPANQYYGQIPALK 393

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +++  A + G+ ++L +   +   + +  L E  + V        T  R  +       K
Sbjct: 394 NDLIYAQESGITMVLLIPDAKRRANFSRSLSELEVPV--------TETRDIV-------K 438

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-------NVNSK 685
             V +    L  G + P+  L  +   +     +      + I  + R       NV   
Sbjct: 439 NQVQIMPGELSAGFEWPKLHLTVLTTHELFTQAKHSAPRTRKIANSERLKSYNELNVGDY 498

Query: 686 VILYADTITKSIQLAIDETTRRREKQ----LEHNKKHNI-NPQSVKEKIMEVIDPILLED 740
           V+     I +     +        KQ    + + +   I  P +    I + +    +  
Sbjct: 499 VVHINHGIGR--YEGLQTIEADGGKQDYLTIAYQQNAKIFIPVTQLNLIQKYVGASDVAK 556

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS 766
               N  +   + + +K++  A ++ 
Sbjct: 557 KPKLN-KLGGSEWAKTKRQVAAKIED 581



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 71/188 (37%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G     +I        P++        + V D I     +  
Sbjct: 770 VLTLTATPIPRTLNMAMVGARDLSVIETPPANRYPIQTYVLAMDWKIVRDAIEKEITRNG 829

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   + E   + RV  +H ++   +   I+ D   G++DVLV   +
Sbjct: 830 QVFYLHNRVADLDRIVSQIEELIPSARVAAIHGQMSETQLESILYDFLNGQYDVLVTTTI 889

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G  +    L Q  GR  R+       +    T++     
Sbjct: 890 IETGVDIPNANTLIVENADHMGLAQ----LYQLRGRVGRSTRLAYAYFTYPFTRTPS--- 942

Query: 702 DETTRRRE 709
           +E  +R E
Sbjct: 943 EEAEKRLE 950


>gi|298244980|ref|ZP_06968786.1| transcription-repair coupling factor [Ktedonobacter racemifer DSM
           44963]
 gi|297552461|gb|EFH86326.1| transcription-repair coupling factor [Ktedonobacter racemifer DSM
           44963]
          Length = 1169

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/465 (20%), Positives = 174/465 (37%), Gaps = 46/465 (9%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q     +LL+ I   E V LL G+T + + + +A +  A+++P +++  ++  A QL   
Sbjct: 12  QRPEFRRLLEQIRQPEGVPLLTGITEAARPYVIAALSVALKQPLLIVVQDENQATQLAET 71

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            K F  + +  + +   D    E  +   +T   +  +    ++R          ER   
Sbjct: 72  LKQFLTNPSDVFCLPDRDAMPFERLIGDAETTQHRLQTFIALVER----------ERTPI 121

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V S+ +    +   +  +  + QL+ G  ++   +L  L    Y+        G F   
Sbjct: 122 VVCSARALTQPVIPPQELATALFQLREGQEIDLTSMLEQLYDLGYEPVAEVEQPGQFSHR 181

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  I++FP  L     R+  FG++IE I  F   T + +  ++   +      +  R   
Sbjct: 182 GGIIDLFPPTL-PRPVRIEFFGDEIESIRTFDQATQRSLNPIQDCVVGPAREALPVRGPQ 240

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
                           EL      +  +  E+R   DL++L+   S   I  Y  YL   
Sbjct: 241 AA-------------QELATLDSKILHRDAEERWNNDLDVLKQRRSFDDIAFYLPYLH-- 285

Query: 453 NPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
                P T+ +Y+P   LL +D        I ++    +    R     E    L     
Sbjct: 286 ----QPATVLDYLPRTGLLILDNPGLIQNRILELDAQVQEIKERLERERENPAHLKEAHI 341

Query: 510 NRPLRFEEWNCLRPTTI--VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
             P         R      ++SA  G +E+ Q  G   E ++ P    +      S   +
Sbjct: 342 AWPELELALQQRRQVRFADILSAAEGEFEMRQHGG--SEHLMPPFSSAN------SYGGR 393

Query: 568 VEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEY--LYERNIRV 609
           +     +   A +   R +++T   +RMAE L++   L ++ I V
Sbjct: 394 LRAFVLDCRKALENRDRIVIVTAQARRMAEVLSDESILQDKAIHV 438



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 69/194 (35%), Gaps = 13/194 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L      + +  +    P   +     IR      E + + I     +
Sbjct: 779 VLTMTATPIPRTLHMSLVNLRDMSVIETPPQERLPIRTTIREYDD--ELIREAILREIDR 836

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++       +  + + + L +     R    H ++      +++ +   G+FDVL+  
Sbjct: 837 GGQVFFVHNRVQGIQMIAQKLQKLVPEARITVGHGQMNEDMLEKVMLNFTNGEFDVLIST 896

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + + +A   G  +    L Q  GR  R  +     +  +    +  
Sbjct: 897 TIIENGLDIPNANTIIVNNAAYFGLSQ----LYQLRGRVGRGTHQAYAHFFYSKNARLTP 952

Query: 700 AIDETTRRREKQLE 713
            I E  R R     
Sbjct: 953 -IQE-KRLRAIFEA 964



 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 8/187 (4%)

Query: 69  RENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRS 128
              T   G   S  ++S         ++  +  SVQ +AR +      L + +   P  +
Sbjct: 553 DRVTRFIGMGDSVPALSKLGTTEWTRAKSRVKESVQDVARELLK----LYSAREAAPGYA 608

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMA 186
           +S ++    +   +    Y  + DQ  AI ++   +   +   +L+ G  G GKT   + 
Sbjct: 609 FSPDSEQPWLQELEDAFPYEETPDQARAIEEVKADMERPKAMDRLVCGDVGYGKTEVALR 668

Query: 187 KVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
              +++  QR   V+ P  ILA Q Y+ FK       V   +      + E      D  
Sbjct: 669 AAFKSVLDQRQVAVLVPTTILALQHYNTFKERLKAYPVRVELLSRFRSEKEQKQVLEDLA 728

Query: 245 IEKESSI 251
           + K   I
Sbjct: 729 MGKVDII 735


>gi|315222838|ref|ZP_07864723.1| transcription-repair coupling factor [Streptococcus anginosus
           F0211]
 gi|315188074|gb|EFU21804.1| transcription-repair coupling factor [Streptococcus anginosus
           F0211]
          Length = 1168

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 102/537 (18%), Positives = 202/537 (37%), Gaps = 65/537 (12%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           +Q   IA   + +    + QLL+G++ S K  TMA  +E   +  +++      A +L S
Sbjct: 12  NQNKQIADWQRNLSKSTR-QLLMGLSSSTKAVTMASCVEENHK-ILILTSTYSEAERLSS 69

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +         V  F+               DT + +    +++    R  A   LL+   
Sbjct: 70  DLIELLGEEKVYTFL-------------ADDTPLAEFVFSSQEKIFSRLEALDFLLDSQQ 116

Query: 272 C--IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
              ++V+  +    +    +++   + LKIG   E K+L+  L    YK+      +G F
Sbjct: 117 SGFLIVNVAASQLFLPDPVNFNSAYIDLKIGQEYELKDLIHQLSNSGYKQVSQVFNQGEF 176

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
            + GD ++IF    + + +RV  FG++++ I  F P     I+NVE + I+  +  +  +
Sbjct: 177 SLRGDILDIFERSSQ-IPFRVEFFGDEVDGIRLFNPENQISIQNVEHVHIHPATDIIFTK 235

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
               +A K I+  ++  +    K              +Y  E+L +T       +  + L
Sbjct: 236 ADYKSAQKKIENLIEKTVDSASK--------------SYLEEILASTKEQIQHTDIRKLL 281

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
           +     E   T+ +Y+P+ S +F D+      +I   +       A L     +    ++
Sbjct: 282 SYFYQNE--WTILDYLPKHSPIFFDD----FQKIMNRHAQFQLEVANLLTEDLQTSKSVE 335

Query: 510 N---RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
           N       +  +   +P T   +   G   L+        Q         P  E  S   
Sbjct: 336 NQSYFADTYLIFRKYKPATFFSNFHKGLGNLKFDSLYQFNQY--------PMQEFFS--- 384

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q + + +EI+   +    +++   +    + L + L E  I + Y+              
Sbjct: 385 QFQLLKEEISRYKKSNYTVIIQSNSLLTLQSLHKSLQEYEIPLDYV-------------N 431

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           D ++ K  V +    L +G +  +  +V I + D       +    Q+I  A R  N
Sbjct: 432 DTKIHKHAVQLVEGRLIQGFNFVDEKIVLITEYDILQKKVKRKVRRQSISNAERLKN 488



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 73/185 (39%), Gaps = 8/185 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          + D +     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNATVIRDAVLREMDRGG 825

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E    +L E + E +I   Y+H ++  +     + D   G++D+LV  
Sbjct: 826 QVYYLYNKVDTMEQKVSELKELIPEASI--GYVHGQMSEILLENTLLDFINGEYDILVTT 883

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I +AD  G L +   L   IGR+ R   + ++   D I   I  
Sbjct: 884 TIIETGVDIPNVNTLFIENADYMG-LSTLYQLRGRIGRSNRIAYAYLMYRPDKILTEISE 942

Query: 700 AIDET 704
              ET
Sbjct: 943 KRLET 947


>gi|78224730|ref|YP_386477.1| transcription-repair coupling factor [Geobacter metallireducens
           GS-15]
 gi|78195985|gb|ABB33752.1| transcription-repair coupling factor [Geobacter metallireducens
           GS-15]
          Length = 1158

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 108/527 (20%), Positives = 194/527 (36%), Gaps = 77/527 (14%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
             I ++   +  +     L G+ GS   + +A++++  +RP +V+AP+   AA++ +E +
Sbjct: 7   QLIDRITGHLAPKTGRVTLTGLKGSAPAYLLAQLLKTAERPLLVIAPDADRAAEICTELR 66

Query: 215 NFFPHN-AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
            F      V  F             P  D    ++ S +  +   R +  R L++R    
Sbjct: 67  FFSGRPFDVLSF-------------PAWDVAPFEKGSPHADVTGQRLACLRRLMDRKTAA 113

Query: 274 VVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           VV++   +   +          +    G+   + E L+ LV   Y    +   RGTF V 
Sbjct: 114 VVTTPDALRQRVLPRTMLDNASLYFLPGEESNRDEFLAKLVTLGYLNVPLVEDRGTFAVR 173

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++IFP   E    R+  FG+ +E I  F PL+ + +  +E + +  +   V     L
Sbjct: 174 GGIVDIFPPGFE-QPVRIEFFGDFVETIRAFDPLSQRSLAPLEELLLLPSREMVLTDEVL 232

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            +A  +IK     R  ELE                  LE L+       +E        R
Sbjct: 233 KSASHHIKA----RCDELEIS---------PVARRELLEQLQQGLYPTGVEWLLPLFHPR 279

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                  TLF+Y  +   + +D      P+        F R          L +  D   
Sbjct: 280 LE-----TLFDYAGDAVRVVLD------PEALAEEDERFDR---------ELVTAEDQAR 319

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQ--------CQGIIVEQIIRPTGLV---DPPVEI 561
            R + +       +  S T GS E  +          G   E+      +    D  V++
Sbjct: 320 ERGDLFASPAEFFLTASETAGSIEAGRLVTIPYLTVTGESDEKTALALDIQENTDLKVDV 379

Query: 562 RS-ARTQVEDVYDEINLAAQQGLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEV 616
            S +   ++ +   +N   ++  R+++    +    R+ E L+ Y    NI  R   +E 
Sbjct: 380 SSDSERILKPLVTRLNGWLEERQRVIVACHQRGQAQRLYELLSHYPLPLNISDRPFPAE- 438

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                    R+   GK DV++    L  G  +PE  L+ I + +  G
Sbjct: 439 ---------RERDDGKVDVVI--GDLSRGFRLPEEKLIVIAEEEIFG 474



 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 68/191 (35%), Gaps = 15/191 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + ++ATP    L      I +  I  T  VD            +D+  E  +   +   
Sbjct: 771 ILTLTATPIPRTLYMSMMGIRDLSIIDTPPVDRLAVKTFVARSSDDLIREAVMRELRRGG 830

Query: 585 ILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +  V  +       AE L   + E  I V   H ++   E  +++     G+ ++L+  
Sbjct: 831 QIFFVHNRVQSIMNWAEHLRRIVPEAKIAVG--HGQMDEGELEKVMLGFMHGETNLLLCT 888

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + I  AD  G  +    L Q  GR  R+           +    + 
Sbjct: 889 TIIESGLDIPNANTLIIDRADTFGLAQ----LYQLRGRVGRSKQRAYAY----LLIPGEG 940

Query: 700 AIDETTRRREK 710
           AI    R R K
Sbjct: 941 AISSDARERLK 951


>gi|309389992|gb|ADO77872.1| transcription-repair coupling factor [Halanaerobium praevalens DSM
           2228]
          Length = 1160

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 81/512 (15%), Positives = 183/512 (35%), Gaps = 54/512 (10%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
               Q + G++GS   +     ++   +  +   P+     Q+  +       +    F 
Sbjct: 21  NNSSQSISGLSGSRLAYFAVNFLKEAAKDIVFFLPDNYYLQQMQEDLIRLIGKDEFLVFP 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
              +    E  +P   T  E+   + E +         S+ ++   I+ +  +    +  
Sbjct: 81  EE-EILPHEQLMPDLTTMSERTQVLTELV--------FSIDQKKKIILTTPAAVFKKLPP 131

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
              Y+Q  + L   + V+ ++L   L    Y+R+++    G + + G  I+IF + L++ 
Sbjct: 132 KAIYNQQSINLSKNNEVKIEKLRERLFALGYQREEMVEAPGQYSIRGGIIDIF-TLLDEQ 190

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+ +FG++++ I +      +  + VE + I   ++ V  +  +  A   ++      
Sbjct: 191 PFRIELFGDEVDSIRKIDLTAQRSKKEVEKLTIPPFANLVIDQKVIKRAYPKLEAAYAAA 250

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           + +L +     EA  L ++    LE L+        E +  +       +     F+Y+ 
Sbjct: 251 VKKLAENNCQKEASYLREKAKKMLEDLKEKHRFPGFEQFLPFYY-----QETNNFFDYLS 305

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
           E S++F              Y+        L E G   P  +DN                
Sbjct: 306 E-SIVFAVRPKKIEQLTHSYYQEILETYNRLLEQGIVFPQYIDN---------------- 348

Query: 527 VVSATPGSWELEQCQGIIV-----EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            +S      ELE+ Q I +     E+  + + +      +     Q+E   +++    ++
Sbjct: 349 FISEAELKTELEKNQIITINSDFDEKESKKSDIHFKTSALEPFHGQLELFSEKVIQLLKK 408

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             +I +T+ +      L  +L E+N+ +                 D    +  +++  N 
Sbjct: 409 KYKIAITLNSASKKRRLKMFLEEKNLIIG---------------EDFE--ESRIIILANS 451

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           L EG    +  L    D +  G  + +   I 
Sbjct: 452 LAEGFIFEDIKLAVFSDKEVFGNEQKRKRKIG 483



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 68/188 (36%), Gaps = 12/188 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P+         E +   I     +  
Sbjct: 771 VLTLTATPIPRTLHMALVGVRDMSLIETPPENRYPIRTFIKEDNSELITSAIRRELARNG 830

Query: 584 RILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +I       +  E     L + + E  I V   H ++      +I+ D    KFD+LV  
Sbjct: 831 QIYFVHNRVKDIEKTAGKLQKLMPEAKIAVA--HGQMNEKRLEKIMYDFYQQKFDILVCT 888

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ- 698
            ++  GLDIP    + I  AD+ G L     L   +GR  R   + ++   D I   +  
Sbjct: 889 TIIETGLDIPNVNTIIINHADRMG-LSQLYQLRGRVGRTNRIAYAYLLYEKDRILAEVAE 947

Query: 699 ---LAIDE 703
               AI E
Sbjct: 948 KRLEAIKE 955


>gi|312144318|ref|YP_003995764.1| transcription-repair coupling factor [Halanaerobium sp.
           'sapolanicus']
 gi|311904969|gb|ADQ15410.1| transcription-repair coupling factor [Halanaerobium sp.
           'sapolanicus']
          Length = 1164

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 79/501 (15%), Positives = 180/501 (35%), Gaps = 44/501 (8%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           + G+ GS  +F  A ++E  +   +   P+     Q+  +            F       
Sbjct: 27  VSGLKGSSLSFFAANILEKAKSNVVFFLPDNYYLQQMQEDLLRLLKRKNFLVF------- 79

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
            PE  +   +  +   ++I+E+   +              I+ +  +    +   ++Y  
Sbjct: 80  -PEEEILPHEQLMSDLTTISERTKVLTDLVFAK-KTDKKIILTTPAAVFKKLTPKDTYKS 137

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             + LK+G+ ++ K++  +L    YKR+++    G + + G  I+IF + L++  +R+ +
Sbjct: 138 KSLYLKVGNEIDLKKIKRALFSLGYKREEMVEAPGQYSIRGGIIDIF-TLLDEQPFRIEL 196

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG++I+ I +      +    V+ I I   ++ +     +  A   +K+  +  +  L +
Sbjct: 197 FGDEIDSIRKIDLSAQRSKEQVQKIIIPPFANIIVDEAVVQRAYPRLKQSYEQAIKSLNQ 256

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           +G   EA+ L+ +    LE           E +  Y           + F+Y+ E ++  
Sbjct: 257 KGLSEEAEYLQAKSKDLLEKFREQHRFPGFEQFLHYYYPEA-----DSFFDYLSESTIFR 311

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           V    +     S  Y+        L E G  LP  +DN          ++   ++   T 
Sbjct: 312 VRPDKIEKVS-SNNYQEILDNYNNLLEQGIILPDYIDNFLSPQIINEKIKENKVIDIKT- 369

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
                        E+      +      + S   Q+E   ++++   ++  +I +T+ + 
Sbjct: 370 ----------DFDEKTDDKKDINFSVKSLESFHGQLELFAEKVHDLLKKKYKIAITLNSA 419

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
                L  +L ++   V    SE +                 + +  + L E     +  
Sbjct: 420 AKKRRLKMFLEDKGFAVADDFSEAR-----------------IRIFSDSLGESFIFEDIK 462

Query: 653 LVAILDADKEGFLRSKTSLIQ 673
           L    D +  G  + +   I 
Sbjct: 463 LAVFCDREVFGSEQKRKRKIG 483



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P+         E +   +     +  
Sbjct: 771 VLTLTATPIPRTLHMALVGVRDMSLIETPPENRYPIRTFIKEKNHELIAGAVRRELAREG 830

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E +   L +          H ++K     +I+ +    KFD+LV   +
Sbjct: 831 QIYFVHNRVEDIEKIAGKLQKIVPEAKIAVAHGQMKEKRLEKIMYNFYHHKFDILVCTTI 890

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ--- 698
           +  GLDIP    + I  ADK G L     L   +GR  R   + ++   D I   +    
Sbjct: 891 IETGLDIPNVNTIIINHADKMG-LSQLYQLRGRVGRTNRIAYAYLLYKRDRILAEVAEKR 949

Query: 699 -LAIDE 703
             AI E
Sbjct: 950 LEAIKE 955


>gi|227888873|ref|ZP_04006678.1| transcription-repair coupling factor [Lactobacillus johnsonii ATCC
           33200]
 gi|227850566|gb|EEJ60652.1| transcription-repair coupling factor [Lactobacillus johnsonii ATCC
           33200]
          Length = 1165

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 93/521 (17%), Positives = 189/521 (36%), Gaps = 55/521 (10%)

Query: 158 AQLLKGIHSR--EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
            +L   I     EK  LL GV        + ++++A Q+P I++  N+  A  L  E  N
Sbjct: 11  KELNNFIEKAPVEKRSLLTGVNSGAFAAVLMQMLKAWQQPLILVEDNEEKAQTLLDELGN 70

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
             P + V  F        P      T T I     ++      R      L E+   IVV
Sbjct: 71  LLPDDMVFGF--------PVDATIATQTAIASPDELS-----QRLQTLEFLAEKRAGIVV 117

Query: 276 SSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
            +   + Y +     +++     K     +  +L   L +  Y+R+ I    G F   GD
Sbjct: 118 VTPQALQYKLSDPRDFTKAKKIFKPEAEFDLDKLTEWLTQAGYRRESIVARPGEFARRGD 177

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++I+P   ++   R+  FG++++ + EF   T + +  +++I I      V        
Sbjct: 178 ILDIYP-WDQENPIRIEFFGDEVDTVKEFDSATQRSLEEIDSISIGPALDRVFSPHNFQE 236

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A++ IK+++   + E E                  +++LE  G   +      YL  R+ 
Sbjct: 237 AVEKIKQDMSESIAEKESVKN---------HFVKAIDLLEAGGLPDNYAFLIDYLLPRS- 286

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
                 L +Y+ +D LL  D+       ++ +   +    +   + G  L S        
Sbjct: 287 ----FNLIDYLDKDGLLLFDDWQSIKKNVADVDAQNEAFISEEVKAGAMLNSQKLRHSFE 342

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
                  +   +      G   L+       +QI+  T       E++   +Q+  +  E
Sbjct: 343 RVVQKSKQAQILFSLFQKGMGRLK------FDQILNFTTR-----EVQQFFSQMPLIKSE 391

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +   + +G  ++L   ++  A+ + + L +  + +  + ++            L   K  
Sbjct: 392 LTRFSNEGNTVILQADSETRAKQIAQNLVDYGVDIPVVKAD-----------QLLSNKAQ 440

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + VG      G  +P   LV + + +           ++T+
Sbjct: 441 ITVGN--FAHGFALPSLDLVYLTERELFNQRPHHRKRVKTL 479



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V + +    ++  
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPIQTYVMEEMPSIVREAVLREMKRNG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   L E     +  Y+H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFFLHNRIDDIDKVVSQLEELIPEAKIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + + DAD  G L     L   IGR+AR
Sbjct: 885 IETGVDMPNVNTMIVEDADHYG-LSQLYQLRGRIGRSAR 922


>gi|227432633|ref|ZP_03914609.1| transcription-repair coupling factor [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351603|gb|EEJ41853.1| transcription-repair coupling factor [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 1179

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 100/626 (15%), Positives = 212/626 (33%), Gaps = 73/626 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I +L +        QLLLGV G+ +  ++A +     RP ++++  ++ A Q + +  + 
Sbjct: 13  IKKLNEQATVGS-AQLLLGVNGTARAASIAALYRKNPRPMLIISDTQVHADQFFDDLSSL 71

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + V  F             P  ++   + +  + ++   R     +L      IVV+
Sbjct: 72  L-EDLVYNF-------------PAEESIATEMAISSSELRLQRVQTLLALKTEKPIIVVT 117

Query: 277 SVSCIYGIGSVE-SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           S++    +   + S  Q  + +K+GD+     + ++L+   Y    +  I G F   G  
Sbjct: 118 SLAGAERLVPKKQSLEQAHLHVKVGDAYNLNVIKNTLMMMGYTPTKLVQIPGEFAHRGSI 177

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++++P   +D   R+  F N+++++  F   T +   + + I I   + ++      + A
Sbjct: 178 VDVYPITFDD-PIRLDFFDNELDQLKSFDVATQKSTTSFDEINIDPATDFIVSEHQYDQA 236

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              I+       I L    +                ML       ++  Y+ +       
Sbjct: 237 KLAIETAFSDYRINLSGVDKKHATD----GFAPTQYMLNERERGSALVPYAPFFFDGQ-- 290

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
               TL +Y P DSL+ +DE    +         D        E    LP          
Sbjct: 291 ---TTLLDYFPTDSLIIIDEYTRLMETRLQQMTRDQEWIEQQIEAYQLLPKQT------- 340

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQVEDVY 572
             W       ++VS    +  L          + R        V  R A     Q+  + 
Sbjct: 341 --WRTEITD-LLVSNQHATIYL----ANFQRGLNRIKFTNVEEVTTRPANQYYGQIPALK 393

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +++  A + G+ ++L +   +   + +  L E  + V        T  R  +       K
Sbjct: 394 NDLIYAQESGITMVLLIPDAKRRANFSRSLSELEVPV--------TETRDIV-------K 438

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-------NVNSK 685
             V +    L  G + P+  L  +   +     +      + I  + R       NV   
Sbjct: 439 NQVQIMPGELSAGFEWPKLHLTVLTTHELFTQAKHSAPRTRKIANSERLKSYNELNVGDY 498

Query: 686 VILYADTITKSIQLAIDETTRRREKQ----LEHNKKHNI-NPQSVKEKIMEVIDPILLED 740
           V+     I +     +        KQ    + + +   I  P +    I + +    +  
Sbjct: 499 VVHINHGIGR--YEGLQTIEADGGKQDYLTIAYQQNAKIFIPVTQLNLIQKYVGASDVAK 556

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS 766
               N  +   + + +K++  A ++ 
Sbjct: 557 KPKLN-KLGGSEWAKTKRQVAAKIED 581



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 73/195 (37%), Gaps = 10/195 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G     +I        P++        + V D I     +  
Sbjct: 770 VLTLTATPIPRTLNMAMVGARDLSVIETPPANRYPIQTYVLAMDWKIVRDAIEKEIARNG 829

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   + E   + RV  +H ++   +   I+ D   G++DVLV   +
Sbjct: 830 QVFYLHNRVADLDRIVSQIEELIPSARVAAIHGQMSETQLESILYDFLNGQYDVLVTTTI 889

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G  +    L Q  GR  R+       +    T++     
Sbjct: 890 IETGVDIPNANTLIVENADHMGLAQ----LYQLRGRVGRSTRLAYAYFTYPFTRTPS--- 942

Query: 702 DETTRRREKQLEHNK 716
           +E  +R E   +  +
Sbjct: 943 EEAEKRLEAMRDFTE 957


>gi|319940213|ref|ZP_08014566.1| transcription-repair coupling factor [Streptococcus anginosus
           1_2_62CV]
 gi|319810684|gb|EFW07014.1| transcription-repair coupling factor [Streptococcus anginosus
           1_2_62CV]
          Length = 1164

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 101/537 (18%), Positives = 208/537 (38%), Gaps = 65/537 (12%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           +Q   I+   + ++   + QLL+G++ S K+ TMA  +E   +  +++      A +L S
Sbjct: 8   NQNKQISDWQRNLNKSTR-QLLMGLSSSTKSITMASCVEENHK-ILILTSTYSEAERLSS 65

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+               DT + +    +++    R  A   LL+   
Sbjct: 66  DLIDLVGEERVYTFL-------------ADDTPLAEFVFSSQEKIFSRLEALDFLLDSKQ 112

Query: 272 C--IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
              ++V+  +    + +  +++   + LKIG   E K+L+S L+   YK+    + +G F
Sbjct: 113 SGFLIVNVAASQLFLSNPVNFNSAYINLKIGQEYELKDLISQLLNSGYKQVSQVLKQGEF 172

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
            + GD ++IF    + + +RV  FG++++ I  F P     I+NVE + ++  +  +  +
Sbjct: 173 SIRGDILDIFERSSQ-MPFRVEFFGDEVDGIRLFNPENQISIQNVEHVCVHPATDIIFTK 231

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
               +A K I+  ++  +    K              +Y  E+L +T       +  + L
Sbjct: 232 ADYKSAQKKIENLIEKTVDSTSK--------------SYLEEILASTKEQIQHADIRKLL 277

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
           +     E   T+ +Y+P+ S +F D+      +I   +       A L     +    + 
Sbjct: 278 SYFYQNE--WTILDYLPKHSPIFFDD----FQKIMNRHAQFQLEAANLLTEDLQNSKAVG 331

Query: 510 N---RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
           N       +  +   +P T+  +   G   L+        Q         P  E  S   
Sbjct: 332 NQSYFADTYSIFRKYKPATLFSNFHKGLGNLKFDSLYQFNQY--------PMQEFFS--- 380

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q + + +EI+   +    +++   +    + L + L E  I + Y+              
Sbjct: 381 QFQLLKEEISRYKKSNYTVIIQSNSLLTLQSLHKSLQEYEIPLDYV-------------N 427

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           D ++ K  V +    L +G +  +  +V I + D       +    Q I  A R  N
Sbjct: 428 DTKIHKHAVQLVEGRLIQGFNFVDEKIVLITEYDILQKKVKRKVRRQIISNAERLKN 484



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          + D +     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNATVIRDAVLREMNRGG 821

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E    +L E + E +I   Y+H ++  +     + D   G++D+LV  
Sbjct: 822 QVYYLYNKVDTMEQKVSELKELIPEASI--GYVHGQMSEILLENTLLDFINGEYDLLVTT 879

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I +AD  G L +   L   +GR+ R      I YA  + +  + 
Sbjct: 880 TIIETGVDIPNVNTLFIENADYMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKA 932

Query: 700 AIDETTRRRE 709
             + + +R E
Sbjct: 933 LTEISEKRLE 942


>gi|313884578|ref|ZP_07818339.1| transcription-repair coupling factor [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620362|gb|EFR31790.1| transcription-repair coupling factor [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 1181

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 99/661 (14%), Positives = 237/661 (35%), Gaps = 80/661 (12%)

Query: 155 AAIAQLLKGIHSREK---VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
            A  + ++ I++ +K     L+ G+ GS +   +A++ +A     +++  + +   +L  
Sbjct: 8   NAFQESIQQINADKKRKLPYLITGLDGSARAIYLAQLFQARPTTILIVESSDLQMQELSQ 67

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +  P   V  +             P  D    + +  +      R +A   L +   
Sbjct: 68  DLAHILPEVPVLTY-------------PADDNLAIEYAQASMDFASQRVAALNFLAQGQP 114

Query: 272 CIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             V+++++ +   +  V+ +      +++G  ++++ LL +L+   YK  ++ +  G F 
Sbjct: 115 GFVLTTLAGLRQKLNPVDQWVAYNKIIQVGQELDRQALLDTLIALSYKSVNMVMTPGEFS 174

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V G  ++ +P    D   R+  F ++++ I  F   T + +  ++ + +      + P  
Sbjct: 175 VRGGIVDFYPLDS-DYPVRLDFFDSEVDSIRYFNAETQESVEQIDEVILSPVQELIFP-- 231

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
             N     + +ELK R  +   + +    +   Q     L  L+          Y+    
Sbjct: 232 --NFMQLMVADELKKRAKKYLDKVKDPAIKNNLQI--NLLGDLKNLADHNEPLKYASAFF 287

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
           G  P     +L +Y+  D  L +++      +       + +      E G  +P    N
Sbjct: 288 GLIP--ETSSLLDYLRYDGHLVINDYAKLQQEQVQQIEQNHYWIEQEIEKGQLIP----N 341

Query: 511 RPLRFEEWNCLRPT----TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
            P++++ +  L       T+  S     +      G+   +    T             +
Sbjct: 342 LPIKWD-FEDLVKNFSGSTLHFSVLQRGYVAMALAGLFNYKYQTMT----------PYFS 390

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK-TLERIEII 625
           Q+  + D++    +QG  + + + +K+   +  + L +      Y+  E      R+ ++
Sbjct: 391 QMPMIIDDLQTWLKQGYVVQVALPSKKQVLNFRQALADHGFDKVYLQDEQPIQANRVNLV 450

Query: 626 R-DLRLG-----KFDVLVGINLLREGLDIP--ECGLVAILDADKEGFLRSKTSLIQTIGR 677
             DL  G     +   LV  + L + ++ P        + +A+K   ++S   L  ++G 
Sbjct: 451 TLDLSKGFVLSEQAWALVTHHDLFKEVNRPRGRVRQPHLSNAEK---IKSYNEL--SVGD 505

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH-NKKHNINP----QSVKEKIMEV 732
              ++N  V  Y    T  +         R    +E+ N    + P      +++ +   
Sbjct: 506 YVVHLNHGVGRYTGMETLEMNGV-----HRDMLAIEYQNNARVLIPVDKIHLIQKYVSSE 560

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD----------NLNFEE 782
                +     T  +   Q++  + +     L  L  +   A               FE+
Sbjct: 561 SKTPKINKLGGTEWAKTKQKVQATVEDIADDLIKLYAK-REAEKGYRFSPDTPEQSEFEQ 619

Query: 783 A 783
           A
Sbjct: 620 A 620



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 77/201 (38%), Gaps = 16/201 (7%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 764 ERLKQLKAQVDVLTLTATPIPRTLHMSMIGIRDLSVIETPPNNRFPVQTYIMERNEGAIK 823

Query: 573 DEINLAAQQGLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             I     +G +            + A+++++ + +  + V   H ++   E   ++ D 
Sbjct: 824 TAIEREMARGGQCFYLYNRVATIYQRADEISQLVPQARVAVA--HGQMSETELETVLVDF 881

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G +DVLV   ++  G+DIP    + +  ADK G     ++L Q  GR  R      + 
Sbjct: 882 IQGLYDVLVTTTIIETGVDIPNANTLFVDHADKMGL----STLYQLRGRVGRTHR---VA 934

Query: 689 YADTITKSIQLAIDETTRRRE 709
           YA  + +  +   + + +R +
Sbjct: 935 YAYLMYEPFKQLSEVSEKRLK 955


>gi|15671995|ref|NP_266169.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12722849|gb|AAK04111.1|AE006240_9 transcription-repair coupling factor [Lactococcus lactis subsp.
           lactis Il1403]
          Length = 1161

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 98/524 (18%), Positives = 202/524 (38%), Gaps = 66/524 (12%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   + +  +G   RE+  LL G++G+ K+  MA   E +    I++  ++  A +LY 
Sbjct: 8   DQNWQLQKWQQGFSKRERT-LLTGLSGTAKSLVMANAYENVADKYIIVTDSQFHANELYD 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           E         V  F S  + Y  E  +   D                R  A   LL+   
Sbjct: 67  ELSTLLGEEKVFQFFSDDNIYA-EFALASKDRVAY------------RLEALNFLLDEKS 113

Query: 272 C--IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
              +VV  ++    + S E++ +  + L  GD  +   L++ L K  Y++    +  G F
Sbjct: 114 TGFLVVPFLALRSYLPSPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVMTPGEF 173

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
            + GD ++I+P   E+   R+  FG++++ I  F   + + + ++E ++IY  S ++   
Sbjct: 174 SMRGDIVDIYPLDAEN-PVRLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFILTD 232

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
                      +E       L +   LL     +  +   +   +     + +  ++ Y 
Sbjct: 233 -----------KEFDKGAKSLTEMTNLLTDPSAKSYMEEVISAAQNHYYHKDLRKFAEYF 281

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG--DFHRKATLAEYGFRLPSC 507
             +       +L  Y P++  +F+D+        + +     DF       E GF   + 
Sbjct: 282 YDKK-----TSLLNYFPKNVQIFIDDFQKVNEMNNKLEMELADFILSEKAMERGFEGQTY 336

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           + +      +    +P T   +   G   L   Q    +Q             ++    Q
Sbjct: 337 LLD---TMAKVRNYKPATFFSNFQKGLGNLRFEQLYNFKQHS-----------MQQFFGQ 382

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +E  Y E+    +Q   ++L V +    E L + L+E ++ ++ +  E            
Sbjct: 383 LELFYTEVERFIKQEFTVVLAVSS----EKLRKSLHELDLSLQEVDRES----------- 427

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +++GK + L+ +  L  G +  +  LV + + +  G +R K + 
Sbjct: 428 IQVGKVN-LIDLQ-LSNGFNFLDEKLVVMTEHEIFGKMRKKKAR 469



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 65/185 (35%), Gaps = 9/185 (4%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+     T    V 
Sbjct: 748 ERLKELKTQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVMETNYGVVR 807

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           D +     +G ++          E     L E     R  ++H ++  ++    +     
Sbjct: 808 DAVLREISRGGQVYYVYNRVDTIEQKVSQLEELIPEARIGFIHGQMTEVQLENTLLAFIA 867

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G +DVLV   ++  G+DIP    + I +AD  G  +    L Q  GR  R+       + 
Sbjct: 868 GDYDVLVATTIIETGVDIPNANTLFIENADMMGLSQ----LYQLRGRVGRSNRVAYAYFM 923

Query: 691 DTITK 695
               K
Sbjct: 924 YRPEK 928


>gi|229829772|ref|ZP_04455841.1| hypothetical protein GCWU000342_01869 [Shuttleworthia satelles DSM
           14600]
 gi|229791761|gb|EEP27875.1| hypothetical protein GCWU000342_01869 [Shuttleworthia satelles DSM
           14600]
          Length = 1185

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 89/509 (17%), Positives = 197/509 (38%), Gaps = 50/509 (9%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +L + +        +LG     K   +  +        +V+  ++  A QL  E     
Sbjct: 19  RELRRDLRDGGAFYAVLGCIDPAKAQLIYGLGAGYLVR-LVVTRDEKRARQLAEEL---- 73

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
                E+F     YY      P  D    +    +  + R R  A  +L  + + ++V++
Sbjct: 74  -----EFFTENVFYY------PAKDLLFYQSDIRSNVLTRQRMQAVEALRGKEETVIVTT 122

Query: 278 VSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
            S +   +  + SY + I+++  GD +  ++   +L+   Y+        G F V G  I
Sbjct: 123 WSALMNKLPPLSSYDKNIIEVAQGDDMPVEKWRLALIGSGYEPVARVEHPGEFAVRGGII 182

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN---VETIKIYANSHYVTPRPTLN 393
           ++FP   +    R+ ++G++++ +  F P +   + +   ++TI+I  ++  V     L 
Sbjct: 183 DVFP-LTDANPIRIELWGDEVDTMRLFDPDSQLSLSDEDPLQTIRIVPSAEIVLSPEELR 241

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             ++ I+ +         +  +  EA R++      +E +E     Q +E++  Y T   
Sbjct: 242 RGLEGIRADADRVCAGYRESFKTEEAARIKAAADQIIEDVEGGFGSQQVESHLTYFT--- 298

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             +   +L +YIPED ++F+D     +     +            E G+ LP  M     
Sbjct: 299 --DQTLSLIDYIPEDGVIFLDGFQELMASGKVIMEEFSDSMTRRLEEGYILPGQMQMLYD 356

Query: 514 RFEEWNCLRPTT-IVVSATPG-SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
                  LR    +++SA  G    LE  +   +   IR   + +   E+         +
Sbjct: 357 NESLTAKLRGRRGVLLSALEGRDQGLEVREHFHIR--IRQGSVYNNSYEL---------L 405

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             ++    +   +++    ++  A  L + L + N+ V Y           +   +++  
Sbjct: 406 LKDLREYKKNRRKLVYVGNSRTRARRLADDLLQENLNVFYT---------EDPEHEVK-- 454

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDAD 660
           + +++V    L  G ++ + G V + + D
Sbjct: 455 EAEIMVTRGSLSAGYELTDAGFVLLTEED 483



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI    I+    +   P++        E + + +     +G 
Sbjct: 784 VLSLSATPIPRTLHMSLVGIRDMSILDEAPMERTPIQTFVFEHNDEMIREAVLREMARGG 843

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I           D+T  L +      V Y H  +       I+ D   G+ D+LV   +
Sbjct: 844 QIYYVFNRVAQIADMTARLQKLLPEAHVAYAHGRMSQTRLENIMVDFIDGEIDLLVSTTI 903

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDI     + I DAD  G  +    L Q  GR  R+  +    +     K ++   
Sbjct: 904 IEIGLDISNVNTIIIDDADNMGLSQ----LYQLRGRVGRSNRTAYAFFMYRRGKLLKEVA 959

Query: 702 D 702
           +
Sbjct: 960 E 960


>gi|326405611|gb|ADZ62682.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           lactis CV56]
          Length = 1161

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 97/524 (18%), Positives = 202/524 (38%), Gaps = 66/524 (12%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   + +  +G   RE+  LL G++G+ K+  MA   E +    I++  ++  A +LY 
Sbjct: 8   DQNWQLQKWQQGFSKRERT-LLTGLSGTAKSLVMANAYENVADKYIIVTDSQFHANELYD 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           E         V  F S  + Y  E  +   D                R  A   LL+   
Sbjct: 67  ELSTLLGEEKVFQFFSDDNIYA-EFALASKDRVAY------------RLEALNFLLDEKS 113

Query: 272 C--IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
              +V+  ++    + S E++ +  + L  GD  +   L++ L K  Y++    +  G F
Sbjct: 114 TGFLVIPFLALRSYLPSPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVMTPGEF 173

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
            + GD ++I+P   E+   R+  FG++++ I  F   + + + ++E ++IY  S ++   
Sbjct: 174 SMRGDIVDIYPLDAEN-PVRLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFILTD 232

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
                      +E       L +   LL     +  +   +   +     + +  ++ Y 
Sbjct: 233 -----------KEFDKGAKSLTEMTNLLTDPSAKSYMEEVISAAQNHYYHKDLRKFAEYF 281

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG--DFHRKATLAEYGFRLPSC 507
             +       +L  Y P++  +F+D+        + +     DF       E GF   + 
Sbjct: 282 YDKK-----TSLLNYFPKNVQIFIDDFQKVNEMNNKLEMELADFILSEKAMERGFEGQTY 336

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           + +      +    +P T   +   G   L   Q    +Q             ++    Q
Sbjct: 337 LLD---TMAKVRNYKPATFFSNFQKGLGNLRFEQLYNFKQHS-----------MQQFFGQ 382

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +E  Y E+    +Q   ++L V +    E L + L+E ++ ++ +  E            
Sbjct: 383 LELFYTEVERFIKQEFTVVLAVSS----EKLRKSLHELDLSLQEVDRES----------- 427

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +++GK + L+ +  L  G +  +  LV + + +  G +R K + 
Sbjct: 428 IQVGKVN-LIDLQ-LSNGFNFLDEKLVVMTEHEIFGKMRKKKAR 469



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 75/199 (37%), Gaps = 12/199 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+     T    V 
Sbjct: 748 ERLKELKTQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVMETNYGVVR 807

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           D +     +G ++          E     L E     R  ++H ++  ++    +     
Sbjct: 808 DAVLREISRGGQVYYVYNRVDTIEQKVSQLEELIPEARIGFIHGQMTEVQLENTLLAFIA 867

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G +DVLV   ++  G+DIP    + I +AD  G  +    L Q  GR  R+     + YA
Sbjct: 868 GDYDVLVATTIIETGVDIPNANTLFIENADMMGLSQ----LYQLRGRVGRSNR---VAYA 920

Query: 691 DTITKSIQLAIDETTRRRE 709
             + +  ++  + + +R E
Sbjct: 921 YLMYRPEKILSEVSEKRLE 939


>gi|146319859|ref|YP_001199570.1| transcription-repair coupling factor [Streptococcus suis 98HAH33]
 gi|145690665|gb|ABP91170.1| Transcription-repair coupling factor (superfamily II helicase)
           [Streptococcus suis 98HAH33]
          Length = 320

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 138/319 (43%), Gaps = 29/319 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I Q   G++   + QLLLG++G+ K+  MA   + +    +++   +  A +L ++    
Sbjct: 13  INQWQSGLNQSTR-QLLLGLSGTSKSLIMATAYDCLAEKIMIVTATQNDAEKLVADLTAI 71

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  F +           P  +     +     +ID +           +  +V S
Sbjct: 72  IGSENVYNFFTDDS--------PIAEFVFASKERTQSRIDSLNFLTDS---TSSGILVAS 120

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
            V+C   + S E+Y    +QL++G  +E  +L+ +LV   YK+    + +G F   GD +
Sbjct: 121 IVACRVLLPSPETYKGSKIQLEVGQEIEVDKLVKNLVNIGYKKVSRVLTQGEFSQRGDIL 180

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IF    E   +R+  FG++I+ I  F   + + + N++ I I   S  +      + A 
Sbjct: 181 DIFDMQSE-TPYRIEFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYSRAS 239

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           +YI+                +E   LE++ +Y  E+L    +     +  ++L+     E
Sbjct: 240 QYIQT--------------AIEQSTLEEQQSYLREVLADMQTEYRHPDLRKFLSCIY--E 283

Query: 457 PPPTLFEYIPEDSLLFVDE 475
              TL +Y+P+ S LF+D+
Sbjct: 284 QSWTLLDYLPKSSPLFLDD 302


>gi|118566923|gb|ABL01773.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 145

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 97/145 (66%), Positives = 119/145 (82%)

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
           PG++ELE+    +V+Q++RPTGL+DP +E+R   TQV+D+  EI   A    R+L+T LT
Sbjct: 1   PGNYELEKSGDEVVDQVVRPTGLLDPIIEVRLVATQVDDLLSEIRQRAAINERVLVTTLT 60

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           KRMAEDLTEYL E   RVRY+HS++ T+ER+EIIRDLRLG+FDVLVGINLLREGLD+PE 
Sbjct: 61  KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 120

Query: 652 GLVAILDADKEGFLRSKTSLIQTIG 676
            LVAILDADKEGFLRS+ SLIQTIG
Sbjct: 121 SLVAILDADKEGFLRSERSLIQTIG 145


>gi|116510854|ref|YP_808070.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116106508|gb|ABJ71648.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 1162

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 98/524 (18%), Positives = 199/524 (37%), Gaps = 66/524 (12%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   + +  +G   RE+  LL G++G+ K+  MA   E +    I++  ++  A +LY 
Sbjct: 8   DQNWQLQKWQQGFSKRERT-LLTGLSGTAKSLVMANAYENVAEKYIIVTDSQFHANELYD 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           E         V  F S  + Y  E  +   D                R  A   LL+   
Sbjct: 67  ELSTLLGEEKVFQFFSDDNIYA-EFALASKDRVAY------------RLEALNFLLDEKS 113

Query: 272 C--IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
              +VV  ++    + S E++ +  + L  GD  +   L++ L    Y++    +  G F
Sbjct: 114 TGFLVVPFLALRSYLPSPENFLENYLLLTSGDEYDLSNLVNLLSNAGYEKTQRVMTPGEF 173

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
            + GD ++I+P   E+   R+  FG++++ I  F   + + + ++E ++IY  S ++   
Sbjct: 174 SMRGDIVDIYPLDAEN-PVRLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFILTD 232

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
                       E       L +   LL     +  +   +   +     + +  ++ Y 
Sbjct: 233 -----------NEFDKGAKSLTEMTNLLTDPSAKSYMEEVISAAQNHYYHKDLRKFAEYF 281

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP--QISGMYRGDFHRKATLAEYGFRLPSC 507
             +       +L  Y P++  +F+D+            M   DF       E GF   + 
Sbjct: 282 YDKK-----TSLLNYFPKNVQIFIDDFQKVNEINNKLEMELADFILSEKAMERGFEGQTY 336

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           + +      +    +P T   +   G   L   Q    +Q             ++    Q
Sbjct: 337 LLD---TMAKVRNYKPATFFSNFQKGLGNLRFEQLYNFKQHS-----------MQQFFGQ 382

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +E  Y E+    +Q   ++L V +    E L + L+E ++ ++ +  E            
Sbjct: 383 LELFYTEVERFIKQEFTVVLAVSS----EKLRKSLHELDLSLQEVDRES----------- 427

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +++GK + L+ +  L  G +  +  LV + + +  G +R K + 
Sbjct: 428 IQVGKVN-LIDLQ-LSNGFNFLDEKLVVMTEHEIFGKMRKKKAR 469



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 65/185 (35%), Gaps = 9/185 (4%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+     T    V 
Sbjct: 748 ERLKELKTQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVMETNYGVVR 807

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           D I     +G ++          E     L E     R  ++H ++  ++    +     
Sbjct: 808 DAILREISRGGQVYYVYNRVDTIEQKVSQLEELIPEARIGFIHGQMTEVQLENTLLAFIA 867

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G +DVLV   ++  G+DIP    + I +AD  G  +    L Q  GR  R+       + 
Sbjct: 868 GDYDVLVATTIIETGVDIPNSNTLFIENADMMGLSQ----LYQLRGRVGRSNRVAYAYFM 923

Query: 691 DTITK 695
               K
Sbjct: 924 YRPEK 928


>gi|331701922|ref|YP_004398881.1| transcription-repair coupling factor [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129265|gb|AEB73818.1| transcription-repair coupling factor [Lactobacillus buchneri NRRL
           B-30929]
          Length = 1178

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 80/522 (15%), Positives = 194/522 (37%), Gaps = 56/522 (10%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +L+  +    + QL+ GV GS +T  +  +I +  +P +V+  +   A QL ++  N  
Sbjct: 14  QELVATLKPGTR-QLVTGVGGSARTLLIDNLIHSTDKPTVVVVDSLFHADQLVNDLSNLI 72

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
             + +  F             P  +    + ++ + +    R  A   L   +  ++V+S
Sbjct: 73  DDDQLFEF-------------PVEEMGAAELATSSPEYKAQRVLALDKLASGDPAVIVTS 119

Query: 278 VSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           VS I  +    + +    + L++  + + ++L   L +  Y  Q +    G F + G  +
Sbjct: 120 VSGIRRLVPEKKQFQAAKLTLEMDGTYDLEQLKLQLHQMGYVFQKMVAAPGDFSIRGSIL 179

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IFP + +D   R+  F  D++ +  F     + I+N+++I +   +  +          
Sbjct: 180 DIFPLNHQD-PVRIDFFDTDVDSMRTFDVSNQRSIKNIKSITVLPATDLLMTDDQRKAVS 238

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           K     L  RLI  + +     A++L+  +   +  L+   S      ++  +  +    
Sbjct: 239 KQ----LSKRLIAEQSQLDDKAAKKLQGNLEPQIMDLQNGLSDPRWLLFADMIYKKQ--- 291

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              +L +Y+  D ++  D+          +   D        ++   L S       + +
Sbjct: 292 --SSLLDYLAADGVVIFDDYARITETARQLESDDDEWLNDKIKHYEVLKSTTYTNDFK-K 348

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQVEDVYD 573
            ++     T+++S             +  + + R        + +R  +   +Q+  +  
Sbjct: 349 AFSANHHATLILS-------------LFQKGMGRMRLDAIEDITVRPMQQFFSQIPMLRT 395

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           EI    +    +++ V  ++    +   L +  I            ++  +++       
Sbjct: 396 EILRWQKMKQTVIIMVQDEKRLAKVASTLNDFEITA-------TQTDKDHLLKQ------ 442

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +V +  + L  G ++P    V I + +  G +  K    QT 
Sbjct: 443 EVQLISSNLDNGFELPLASCVVITEKEMFGTVTKKRPR-QTT 483



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 75/188 (39%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I     +G 
Sbjct: 770 VLTLTATPIPRTLNMSMMGVRDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMSRGG 829

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   E +       R  Y+H ++   +  +I+ D   G++DVLV   +
Sbjct: 830 QVFYLHNRVSDIEKTVEQISALVPSARVGYIHGQMSENQMEDILYDFINGEYDVLVTTTI 889

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD+ G L     L   IGR++R      + YA  + K  ++  
Sbjct: 890 IETGVDIPNVNTLFVENADRMG-LSQLYQLRGRIGRSSR------VAYAYFMYKPNKVLT 942

Query: 702 DETTRRRE 709
           +   +R E
Sbjct: 943 EIGEKRLE 950



 Score = 39.3 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 9/142 (6%)

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           SAT    ++E  Q  +   ++   G     V +R+A       +  I +  Q    +  T
Sbjct: 627 SATEIKRDME-TQHPMDRLLVGDVGYGKTEVALRAA-------FKAIEVGKQVAFLVPTT 678

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGLD 647
           +L ++  E + +   E  I VR +       +  E ++ L+ GK DV+VG + LL + + 
Sbjct: 679 ILAQQHYETMLDRFREYPITVRVLSRFQTAKQVKETLQGLKDGKVDVVVGTHRLLSKDVK 738

Query: 648 IPECGLVAILDADKEGFLRSKT 669
             + GL+ I +  + G    + 
Sbjct: 739 FNDLGLLIIDEEQRFGVKHKER 760


>gi|312869845|ref|ZP_07729986.1| transcription-repair coupling factor [Lactobacillus oris
           PB013-T2-3]
 gi|311094624|gb|EFQ52927.1| transcription-repair coupling factor [Lactobacillus oris
           PB013-T2-3]
          Length = 1178

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 100/669 (14%), Positives = 232/669 (34%), Gaps = 78/669 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             QLL+      K QL+ G++GS +T  +A ++E  Q+P + +  +     +L  +  N 
Sbjct: 13  FKQLLQQ-RQAAKRQLVTGISGSARTMLLAGMVEQSQQPVLAVVDSLTQLEELADDLSNL 71

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              N V  F             P  +    + ++ +      R  A  +L  +   IVV+
Sbjct: 72  LGANQVYQF-------------PVEEVLAAEVATSSPNYRLQRVQALNALNSQRPVIVVA 118

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           SV+ +   + +   ++Q  +++ +G  ++ +     L    Y+ Q + +  G F + G  
Sbjct: 119 SVAGLRRNVVAPAFFAQATLKVTVGGELDPERARQQLSAMGYQLQKMVLRPGDFAIRGSI 178

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+++ +   D   R+ +F  +++ +  F   T + + NVE ++I   +  + P       
Sbjct: 179 IDVY-ALNTDNPVRIDLFDTEVDSLRYFDASTQKSVGNVEEVEILPATDLILPPAEFPRV 237

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              + ++   +L    + G     Q++  R T  L  L        +  +S  +      
Sbjct: 238 QAAVDQQF-SQLKASLQAGDEDLLQQVNNRFTPLLTALNEHRLPNEMLEFSDLVYPTR-- 294

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS--CMDNRPL 513
               +L +Y+  +  L++D+      + + +   D        +Y  +L S   + N   
Sbjct: 295 ---HSLLDYLGAEGTLYLDDYSHLKDRAAKLADEDQGWLEEKVKY-HQLASVPALSNDLA 350

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
              + +        +         +   G+   Q++  T        ++    Q+  +  
Sbjct: 351 DLIKADRHAQLFGALFK-------KGMGGLRFNQLVELTSRP-----MQRFFGQMPLLKT 398

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E+    +QG  +++        + +   L +  I      ++   +              
Sbjct: 399 ELQRWTEQGQTVVILADGNERRQQIARTLADFGIPAVETGTDQLQVN------------- 445

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARNVNSKVILYA 690
            V +    L  G ++P  GLV I + +    ++ +    Q +    R     + K   Y 
Sbjct: 446 TVQLVAASLNNGFEMPAAGLVVITEGELFKQVKKRRHRAQKLANAERIKSYTDLKPGDYV 505

Query: 691 DTITKSI-------QLAIDETTRRREKQLEHNKKHNINPQS----VKEKIMEVIDPILLE 739
             +   I        + +D   +        N      P +    V++ +     P  + 
Sbjct: 506 VHVNHGIGIFSGIKTMEVDGVHQDYMIINYRNNAQIFVPVTQLNLVQKYVSSESRPPRIN 565

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL-----NFEEA---A-----RI 786
                  +   +++    +     L  L  +   AA        ++ +A   A       
Sbjct: 566 RLGGNEWAKTKRRVESKVEDIADELVDLYAK-REAAKGYAFPADDYLQAQFDANFPYNET 624

Query: 787 RDEIKRLKS 795
           RD+++ +K 
Sbjct: 625 RDQLRSIKE 633



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 64/181 (35%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          + D I     +G 
Sbjct: 773 VLTLTATPIPRTLNMSMLGVRDLSVLETPPAGRFPIQTYVMEQNDGAIRDGITREMNRGG 832

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E+    L       R  Y+H ++   E   ++ D     +DVLV  ++
Sbjct: 833 QVYYLHNRVNDIEETVLKLQSLVPEARIGYIHGKMSENELETVLYDFIQDNYDVLVTTSI 892

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G  +    L Q  GR  R+       +     K +    
Sbjct: 893 IETGVDIPNVNTLFVENADHLGLAQ----LYQIRGRIGRSNRVAYAYFMYQPNKVLTEQG 948

Query: 702 D 702
           +
Sbjct: 949 E 949


>gi|270659740|ref|ZP_06222388.1| UvrABC system, protein B [Haemophilus influenzae HK1212]
 gi|270316921|gb|EFA28617.1| UvrABC system, protein B [Haemophilus influenzae HK1212]
          Length = 139

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 83/139 (59%), Positives = 105/139 (75%)

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           MYRGD  RK TL EYGFRLPS +DNRPLRFEE+  L P TI VSATPG +ELE+    I+
Sbjct: 1   MYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGPYELEKSGSEII 60

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           +Q++RPTGL+DP +EIR    QV+D+  E    A +  R+L+T LTK+MAEDLT+YL E 
Sbjct: 61  DQVVRPTGLLDPLIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEH 120

Query: 606 NIRVRYMHSEVKTLERIEI 624
            IRVRY+HS++ T+ER+EI
Sbjct: 121 GIRVRYLHSDIDTVERVEI 139


>gi|259047960|ref|ZP_05738361.1| transcription-repair coupling factor [Granulicatella adiacens ATCC
           49175]
 gi|259035380|gb|EEW36635.1| transcription-repair coupling factor [Granulicatella adiacens ATCC
           49175]
          Length = 1180

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 86/511 (16%), Positives = 185/511 (36%), Gaps = 55/511 (10%)

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
            QL+LG++GS K    +   E + +  +++ P  + A Q Y E   ++  + V  F    
Sbjct: 26  SQLVLGLSGSVKHLAESCAFEKLDKQLVIVTPTLLQATQTYEELSEWYDEDIVHLF---- 81

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
                    P  ++     S ++  +   R      L      IV+  +S I  +    +
Sbjct: 82  ---------PVEESLAADFSVVSPDVVSQRIRTLDFLSRGQKGIVIVPLSGIQKLLVPAA 132

Query: 290 -YSQMIVQLKIGDSVE-QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
            + +  ++L +G  +E     +  LV+  Y+R+++    G F + G  ++I+P   E   
Sbjct: 133 LWKKSSIELAMGSEIESMDAFVERLVELGYRRENMVATPGEFALRGSIVDIYPLDQE-YP 191

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  F  +++ I  F   T + +  +E ++I   +     +  +  A   I       +
Sbjct: 192 LRLDFFDTEVDSIRAFNAETQRSMDVIEEVRILPATDLPLQKEAVWKAQTKIHALYDKDV 251

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
              +   R  +   ++Q I      LE      ++  +   +          +L +Y+ +
Sbjct: 252 KSSQSPERRDQVSSIQQAID---AQLENGEIPSNLPYFLECIYPEK-----TSLLDYVSK 303

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR---LPSCMDNRPLRFEEWNCLRPT 524
           D+ L +D+    I +   +     + K    E G     L    D R L  E     R  
Sbjct: 304 DAYLIIDDYARFIEKSKSLEEEAGYWKTHHIETGAIASGLSLVQDGRKLLKES-PLKRTY 362

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
             +     G   L+    I    + +               +Q+  V  E +   +QG  
Sbjct: 363 LAIFQKGLGRLSLDAIHPITTRTMTQ-------------FFSQMPMVKVEADRWKKQGAT 409

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V   + A+ + +   + +I+     S +     +E       G+  ++V    +  
Sbjct: 410 VIVLVDDAKRAQKVEQTFADFDIK-----SVISNGTVLE-------GQLQIMV--GKMHN 455

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           G ++PE     + + +    L  +    Q I
Sbjct: 456 GFELPEDKFAILTERELFNKLTKRAPRNQKI 486



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 75/206 (36%), Gaps = 12/206 (5%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     G+    +I        PV+          + 
Sbjct: 761 ERLKQLKSQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPVQTFVMEQNPMTIR 820

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRL 630
           D I     +G ++          E   + L       RV  +H ++       I+     
Sbjct: 821 DGIEREMARGGQVFYLYNRVETIEKKADELRVLVPGCRVGVIHGQMSETTLENILFQFIE 880

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++DVLV   ++  G+DIP    + I +AD  G  +    L Q  GR  R      I YA
Sbjct: 881 GEYDVLVTTTIIETGVDIPNVNTLFIENADYMGLSQ----LYQLRGRVGRTNR---IAYA 933

Query: 691 DTITKSIQLAIDETTRRREKQLEHNK 716
             + +  ++  + + +R +   +  +
Sbjct: 934 YLMYQPDKVLTEVSEKRLQAMRDFTE 959


>gi|210623288|ref|ZP_03293705.1| hypothetical protein CLOHIR_01655 [Clostridium hiranonis DSM 13275]
 gi|210153689|gb|EEA84695.1| hypothetical protein CLOHIR_01655 [Clostridium hiranonis DSM 13275]
          Length = 1147

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 103/637 (16%), Positives = 228/637 (35%), Gaps = 94/637 (14%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +L + +    +  L+ G+  + K    + + + + RP + +   +  A ++Y + K +  
Sbjct: 17  KLKEKLDVEGRCLLVNGLNQAQKAHISSSLFKDLSRPIVFIGSTEYEARKIYEDLKFYIK 76

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
                       +Y    Y+   D          +Q  +   +  +   +    +V +S 
Sbjct: 77  DKVELLTSDEIRFY----YLDAKD---------RKQEAKRIKTLLKLAKKEKLILVTTSD 123

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           + +      +       + K+GD V+ +EL S LV   Y+R       G F V G  ++I
Sbjct: 124 AVLRKYLPKDVLLDNTFKYKVGDIVDIEELSSKLVSLGYERVSKVEGFGQFSVRGGIVDI 183

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           F    E+   R+  F ++I+ I  F   + + I  +++  +  +  ++ P          
Sbjct: 184 FSLEYEN-PIRIEFFDDEIDSIRTFDVFSQKSIDKLKSFILTPSREFIYPEN-------- 234

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
             EE   R+ +    G++         +   ++ +        IENY  Y          
Sbjct: 235 -VEETVSRMKK--DRGKVCSDD-----VEAVIDKIARKEYFDGIENYIDYFYPDVE---- 282

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
            ++FEY+ +++++F+++      +                E G  L S   N    + + 
Sbjct: 283 KSIFEYLDKNAIVFINDISRMKERCENFAEEFKDSYKMNLERGTALKSQG-NLVYNYIDL 341

Query: 519 NCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
                    ++ S  P     +  +G  V++I+          E+ S   +++ + DE+ 
Sbjct: 342 EYCIGDRNIVINSLLP-----KAVKGFNVKEILNFDSR-----EVPSFNGKIDILADELQ 391

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G +I+L V +   A+ L E L+E ++ V            I   RD  +     +
Sbjct: 392 RLKYSGHKIILAVNSSERAKKLKEALFEYDVEV-----------SIAKKRDTEIKSSQAI 440

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG-----RAARNVNSKVILYAD 691
           +    + EG    +     I D +  G        +Q  G     +  +N N++ I    
Sbjct: 441 IMEAAISEGFQYRDIKFTIITDKEMIG--------VQRSGLKSKKKKKKNTNAQKIDSFL 492

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--------PILLEDAAT 743
            +     +  + +   R   ++      I    +K+  M+++         PI   D   
Sbjct: 493 DLNPGDYVVHENSGIGRYIGID-----QITVDGIKKDYMKIVYRDGDNLYVPIDQMDKVQ 547

Query: 744 TNISIDAQQLSLS----------KKKGKAHLKSLRKQ 770
             I  +A+++ LS          K K +  ++ + ++
Sbjct: 548 KYIGAEAEKVKLSRLGTQEWTKAKAKVRKEIEDMTEE 584



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 75/196 (38%), Gaps = 19/196 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-----VYDEINLAA 579
            + +SATP    L      I +     T + +PP E     T V +     + DEI    
Sbjct: 768 VLTLSATPIPRTLHMSLSGIRDM----TVIEEPPQERHPVITYVTEARDSIIQDEIEKEI 823

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++          E + + + +   + RV   H  + +    +II      +FDVLV
Sbjct: 824 SRGGQVFFVYNRVEGIEGIADKVRKLVPDARVAVAHGRMSSKTLEDIIIAFMQKEFDVLV 883

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + I DADK G  +    L Q  GR  R+             KS 
Sbjct: 884 CTTIIETGMDIANANTMIIYDADKMGLAQ----LYQLRGRVGRSTRQGYAFLMYERNKS- 938

Query: 698 QLAIDETTRRREKQLE 713
              + E   +R K ++
Sbjct: 939 ---LSEIAEKRLKAIK 951


>gi|306832490|ref|ZP_07465642.1| transcription-repair coupling factor [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304425390|gb|EFM28510.1| transcription-repair coupling factor [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 1170

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 87/524 (16%), Positives = 189/524 (36%), Gaps = 60/524 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I     G+ +    QL++G++GS +   +A   +A +   +V+   +    +L S+
Sbjct: 13  QNKLIQTWHSGV-ANLGRQLIMGLSGSSRALAIASAYQANEEKIVVITSTQNEVEKLASD 71

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND- 271
             +    + V  F                D    +    +      R  A   L +    
Sbjct: 72  LSSLIGEDKVYTFF-------------ADDVAAAEFIFASMDKAHSRLEALNFLQDNKQS 118

Query: 272 -CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             ++ S V     + + E Y++  +   +G+     +++  L    Y++    +  G F 
Sbjct: 119 GILITSLVGARVLLPNPEIYAESQLNFVVGEDYNLDKVVKVLSNVGYQKVSQVLNPGEFS 178

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
             GD ++I+     D  +R+  FG++++ I +F   T + + N+E + I      +    
Sbjct: 179 RRGDIVDIYEM-TADYPYRLEFFGDEVDGIRQFDAETQKSLSNIEQVTISPADELILSEE 237

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
               A K  +                LE  + EQ+  Y  E+   T      ++  R+L+
Sbjct: 238 DFARASKAFET--------------FLETAKDEQQQAYLSELYAATQEQYKHQDIRRFLS 283

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
                E   TL +YIP+ + +F D+    + + +       +      + G  + S +  
Sbjct: 284 LFYAKE--WTLLDYIPKGTPVFFDDFQKLVDRNAKFDLEVANLLTEDLQRGKAVSSLV-Y 340

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
               +++    +P T   +   G   L+  +     Q             ++    Q   
Sbjct: 341 FADIYKDLRQYQPATFFSNFHKGLGNLKFDKLHNFTQYP-----------MQEFFNQFPL 389

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + DE+N   +    +L+   ++   E L E L+E  + +  + ++           DL+ 
Sbjct: 390 LIDEVNRYQKSKATVLIQADSQHGLERLQENLHEYGLELPVVAAD-----------DLQA 438

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
            +  ++VG   L  G    +  +V I   + E + +     I+ 
Sbjct: 439 QQAQLVVGN--LSNGFYFADEKIVLI--TEHEIYHKKIKRRIRR 478



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 65/172 (37%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     T    + + I     +G 
Sbjct: 767 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPGLIREAIIREIDRGG 826

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +     L E        ++H ++  ++    + D   G +DVLV   +
Sbjct: 827 QVFYVYNRVDTIDQKVSELQELVPEASIGFVHGQMSEIQLENTLMDFIDGVYDVLVATTI 886

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+DI     + I +AD  G L +   L   +GR+ R   + ++   D I
Sbjct: 887 IETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNRIAYAYLMYRPDKI 937


>gi|288904230|ref|YP_003429451.1| transcription repair coupling factor [Streptococcus gallolyticus
           UCN34]
 gi|325977207|ref|YP_004286923.1| transcription-repair coupling factor [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288730955|emb|CBI12499.1| Transcription repair coupling factor [Streptococcus gallolyticus
           UCN34]
 gi|325177135|emb|CBZ47179.1| transcription-repair coupling factor [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 1166

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 87/524 (16%), Positives = 189/524 (36%), Gaps = 60/524 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I     G+ +    QL++G++GS +   +A   +A +   +V+   +    +L S+
Sbjct: 9   QNKLIQTWHSGV-ANLGRQLIMGLSGSSRALAIASAYQANEEKIVVITSTQNEVEKLASD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND- 271
             +    + V  F                D    +    +      R  A   L +    
Sbjct: 68  LSSLIGEDKVYTFF-------------ADDVAAAEFIFASMDKAHSRLEALNFLQDNKQS 114

Query: 272 -CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             ++ S V     + + E Y++  +   +G+     +++  L    Y++    +  G F 
Sbjct: 115 GILITSLVGARVLLPNPEIYAESQLNFVVGEDYNLDKVVKVLSNVGYQKVSQVLNPGEFS 174

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
             GD ++I+     D  +R+  FG++++ I +F   T + + N+E + I      +    
Sbjct: 175 RRGDIVDIYEM-TADYPYRLEFFGDEVDGIRQFDAETQKSLSNIEQVTISPADELILSEE 233

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
               A K  +                LE  + EQ+  Y  E+   T      ++  R+L+
Sbjct: 234 DFARASKAFET--------------FLETAKDEQQQAYLSELYAATQEQYKHQDIRRFLS 279

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
                E   TL +YIP+ + +F D+    + + +       +      + G  + S +  
Sbjct: 280 LFYAKE--WTLLDYIPKGTPVFFDDFQKLVDRNAKFDLEVANLLTEDLQRGKAVSSLV-Y 336

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
               +++    +P T   +   G   L+  +     Q             ++    Q   
Sbjct: 337 FADIYKDLRQYQPATFFSNFHKGLGNLKFDKLHNFTQYP-----------MQEFFNQFPL 385

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + DE+N   +    +L+   ++   E L E L+E  + +  + ++           DL+ 
Sbjct: 386 LIDEVNRYQKSKATVLIQADSQHGLERLQENLHEYGLELPVVAAD-----------DLQA 434

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
            +  ++VG   L  G    +  +V I   + E + +     I+ 
Sbjct: 435 QQAQLVVGN--LSNGFYFADEKIVLI--TEHEIYHKKIKRRIRR 474



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 65/172 (37%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     T    + + I     +G 
Sbjct: 763 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPGLIREAIIREIDRGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +     L E        ++H ++  ++    + D   G +DVLV   +
Sbjct: 823 QVFYVYNRVDTIDQKVSELQELVPEASIGFVHGQMSEIQLENTLMDFIDGVYDVLVATTI 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+DI     + I +AD  G L +   L   +GR+ R   + ++   D I
Sbjct: 883 IETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNRIAYAYLMYRPDKI 933


>gi|281490512|ref|YP_003352492.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           lactis KF147]
 gi|281374330|gb|ADA63863.1| Transcription-repair coupling factor [Lactococcus lactis subsp.
           lactis KF147]
          Length = 1161

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 96/523 (18%), Positives = 203/523 (38%), Gaps = 64/523 (12%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   + +  +G   RE+  LL G++G+ K+  MA   E +    I++  ++  A +LY 
Sbjct: 8   DQNWQLQKWQQGFSKRERT-LLTGLSGTAKSLVMANAYENVADKYIIVTDSQFHANELYD 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           E         V  F S  + Y  E  +   D       ++N  +D           E++ 
Sbjct: 67  ELSTLLGEEKVFQFFSDDNIYA-EFALASKDRVAYLLEALNFLLD-----------EKST 114

Query: 272 CIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             +V     +   + S E++ +  + L  GD  +   L++ L K  Y++    +  G F 
Sbjct: 115 GFLVVPFLALRSYLPSPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVMTPGEFS 174

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++I+P   E+   R+  FG++++ I  F   + + + ++E ++IY  S ++    
Sbjct: 175 MRGDIVDIYPLDAEN-PVRLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFILTD- 232

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                     +E       L +   LL     +  +   +   +     + +  ++ Y  
Sbjct: 233 ----------KEFDKGAKSLTEMTNLLTDPSAKSYMEEVISAAQNHYYHKDLRKFAEYFY 282

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG--DFHRKATLAEYGFRLPSCM 508
            +       +L  Y P++  +F+D+        + +     DF       E GF   + +
Sbjct: 283 DKK-----TSLLNYFPKNVQIFIDDFQKVNEMNNKLEMELADFILSEKAMERGFEGQTYL 337

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
            +      +    +P T   +   G   L   Q    +Q             ++    Q+
Sbjct: 338 LD---TMAKVRNYKPATFFSNFQKGLGNLRFEQLYNFKQHS-----------MQQFFGQL 383

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E  Y E+    +Q   ++L V +    E L + L+E ++ ++ +  E            +
Sbjct: 384 ELFYTEVERFIKQEFTVVLAVSS----EKLRKSLHELDLSLQEVDRES-----------I 428

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           ++GK + L+ +  L  G +  +  LV + + +  G +R K + 
Sbjct: 429 QVGKVN-LIDLQ-LSNGFNFLDEKLVVMTEHEIFGKMRKKKAR 469



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 65/185 (35%), Gaps = 9/185 (4%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+     T    V 
Sbjct: 748 ERLKELKTQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVMETNYGVVR 807

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           D +     +G ++          E     L E     R  ++H ++  ++    +     
Sbjct: 808 DAVLREISRGGQVYYVYNRVDTIEQKVSQLEELIPEARIGFIHGQMTEVQLENTLLAFIA 867

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G +DVLV   ++  G+DIP    + I +AD  G  +    L Q  GR  R+       + 
Sbjct: 868 GDYDVLVATTIIETGVDIPNANTLFIENADMMGLSQ----LYQLRGRVGRSNRVAYAYFM 923

Query: 691 DTITK 695
               K
Sbjct: 924 YRPEK 928


>gi|42518364|ref|NP_964294.1| transcription-repair coupling factor [Lactobacillus johnsonii NCC
           533]
 gi|41582649|gb|AAS08260.1| transcription-repair coupling factor [Lactobacillus johnsonii NCC
           533]
          Length = 1165

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 93/521 (17%), Positives = 187/521 (35%), Gaps = 55/521 (10%)

Query: 158 AQLLKGIHSR--EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
            +L   I     EK  LL GV        + ++++  Q+P I++  N+  A  L  E  N
Sbjct: 11  KELNNFIEKAPVEKRSLLTGVNSGAFAAVLMQMLKVWQQPLILVEDNEEKAQTLLDELGN 70

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
             P + V  F        P      T T I     ++      R      L E+   IVV
Sbjct: 71  LLPDDMVFSF--------PVDATIATQTAIASPDELS-----QRLQTLEFLAEKRAGIVV 117

Query: 276 SSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
            +   + Y +     +++     K     +  +L   L +  Y+R+ I    G F   GD
Sbjct: 118 VTPQALQYKLSDPRDFTKAKKIFKPEAEFDLDKLTEWLTQAGYRRESIVARPGEFARRGD 177

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++I+P   E+   R+  FG++++ + EF   T + +   ++I I      V        
Sbjct: 178 IVDIYPLDQEN-PIRIEFFGDEVDTVKEFDSATQRSLEEKDSISIGPALDRVFSPHNFQE 236

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A++ IK+++   + E E                  +++LE  G   +      YL  R+ 
Sbjct: 237 AVEKIKQDMSESIAEEESVKN---------HFVKAIDLLEAGGLPDNYAFLIDYLLPRS- 286

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
                 L +Y+ +D LL  D+       ++ +   +    +   + G  L S        
Sbjct: 287 ----FNLIDYLDKDGLLLFDDWQSIKKNVADVDAQNEAFISEEIKAGAMLNSQKLRHSFE 342

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
                  +   +      G   L+       +QI+  T       E++   +Q+  +  E
Sbjct: 343 RVVQKSKQAQILFSLFQKGMGRLK------FDQILNFTTR-----EVQQFFSQMPLIKSE 391

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +   + +G  ++L   ++  A+ + + L +  + +  + ++            L   K  
Sbjct: 392 LTRFSNEGNTVILQADSETRAKQIAQNLVDYGVDIPVVKAD-----------QLLSNKAQ 440

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + VG      G  +P   LV + + +           ++T+
Sbjct: 441 ITVGN--FAHGFALPSLDLVYLTERELFNQRPHHRKRVKTL 479



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V + +    ++  
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPIQTYVMEEMPSIVREAVLREMKRNG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   L E     +  Y+H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFFLHNRIDDIDKVVSQLEELIPEAKIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + + DAD  G L     L   IGR+AR
Sbjct: 885 IETGVDMPNVNTMIVEDADHYG-LSQLYQLRGRIGRSAR 922


>gi|270643339|ref|ZP_06222142.1| UvrABC system, protein B [Haemophilus influenzae HK1212]
 gi|270317312|gb|EFA28863.1| UvrABC system, protein B [Haemophilus influenzae HK1212]
          Length = 142

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 88/142 (61%), Positives = 114/142 (80%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
           + RPA+++APNK LAAQLY+E K FFP NAVEYFVSYYDYYQPEAYVP +DT+IEK++SI
Sbjct: 1   LNRPAMLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASI 60

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           N+QI++MR SAT+S LER D IVV+SVS IYG+G  +SY QM++ L+ G  ++Q+++L+ 
Sbjct: 61  NDQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAK 120

Query: 312 LVKQQYKRQDIGIIRGTFRVCG 333
           L + QY R D    RGTFRV G
Sbjct: 121 LAELQYTRNDQAFQRGTFRVRG 142


>gi|125622895|ref|YP_001031378.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124491703|emb|CAL96622.1| Transcription-repair coupling factor (TRCF) [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300069633|gb|ADJ59033.1| transcription-repair coupling factor [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 1180

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 97/530 (18%), Positives = 208/530 (39%), Gaps = 60/530 (11%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   + +  +G   RE+  LL G++G+ K+  MA   E +    I++  ++  A +LY 
Sbjct: 8   DQNWQLQKWQQGFSKRERT-LLTGLSGTAKSLVMANAYENVADKYIIVTDSQFHANELYD 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           E         V  F S  + Y  E  +   D    +  ++N  +D           ER  
Sbjct: 67  ELSTLLGEEKVFQFFSDDNIYA-EFALASKDRIAYRLEALNFLLD-----------ERAT 114

Query: 272 CIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             +V     +   + + E++ +  + L  GD  +   L++ L K  Y++    +  G F 
Sbjct: 115 GFLVVPFLALRSYLPAPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVMTPGEFS 174

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++I+P   E+   R+  FG++++ I  F   + + + ++E ++IY  S ++    
Sbjct: 175 MRGDIVDIYPLDAEN-PVRLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFILTDN 233

Query: 391 TLNTAMKYIKEE---LKMR----LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
             +   K + E    L  +    + E  + G  +     +  +   +   +     + + 
Sbjct: 234 EFDKGAKSLTEMTNLLGDQTSLSVSEQARNGSAMTDPSAKSYMEEVISAAQNHYYHKDLR 293

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG--DFHRKATLAEYG 501
            ++ Y   +       +L  Y P++  +F+D+        + +     DF       E G
Sbjct: 294 KFAEYFYDKK-----TSLLNYFPKNVQIFIDDFQKVNEMNNKLEMELADFILSEKAMERG 348

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           F   + + +      +    +P T   +   G   L   Q    +Q             +
Sbjct: 349 FEGQTYLLD---TMAKVRNYKPATFFSNFQKGLGNLRFEQLYNFKQHS-----------M 394

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           +    Q+E  Y E+    +Q   ++L V +    E L + L+E ++ ++ +  E      
Sbjct: 395 QQFFGQLELFYTEVERFIKQEFTVVLAVSS----EKLRKSLHELDLSLQEVDRES----- 445

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
                 +++GK + L+ +  L  G +  +  LV + + +  G +R K + 
Sbjct: 446 ------IQVGKVN-LIDLQ-LSNGFNFLDEKLVVMTEQEIFGKMRKKKAR 487



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 65/185 (35%), Gaps = 9/185 (4%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+     T    V 
Sbjct: 766 ERLKELKTQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVMETNYGVVR 825

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           D I     +G ++          E     L E     R  ++H ++  ++    +     
Sbjct: 826 DAILREISRGGQVYYVYNRVDTIEQKVSQLEELIPEARIGFIHGQMTEVQLENTLLAFIA 885

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G +DVLV   ++  G+DIP    + I +AD  G  +    L Q  GR  R+       + 
Sbjct: 886 GDYDVLVATTIIETGVDIPNSNTLFIENADMMGLSQ----LYQLRGRVGRSNRVAYAYFM 941

Query: 691 DTITK 695
               K
Sbjct: 942 YRPEK 946


>gi|222056789|ref|YP_002539151.1| transcription-repair coupling factor [Geobacter sp. FRC-32]
 gi|221566078|gb|ACM22050.1| transcription-repair coupling factor [Geobacter sp. FRC-32]
          Length = 1169

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 93/527 (17%), Positives = 180/527 (34%), Gaps = 62/527 (11%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF- 216
            +++  I   +    L G+ GS   + ++++ +   R   ++ P+   A +LY E + + 
Sbjct: 20  KKIVAAIAPDDANVTLAGLKGSAPAYILSRLWDEHSRLLFIITPDADTAEELYREMRFYS 79

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V YF             P  DT     +S +  I   R +    +++     V+ 
Sbjct: 80  GSDERVLYF-------------PPWDTAPFDTASPHADIVGQRLNVLFRMMDGRAGAVIV 126

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            +  +   +   ++  Q+   +  G+ VE+  LL  LVK  Y    +   RG F + G  
Sbjct: 127 PLPALMQKVLPRKTLGQISQYIVAGEEVERDLLLEKLVKLGYSHVPLVEDRGGFSIRGGI 186

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++IFP  L     R+  FG+ ++ I  F P+T + ++ ++ + +  +   V     L   
Sbjct: 187 LDIFPPDL-PTPVRIEFFGDFVDTIRTFDPVTQRSLQPLQELILLPSREVVISEEVLTAF 245

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
                  LK R   LE             R    LE L++      +E            
Sbjct: 246 APR----LKRRCDALEIPAT---------RRRELLEQLQSAIYPPGVEYLQPLFHPDLE- 291

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
               +LF+Y  ED L  + +        +G        +    E    +   +++  L  
Sbjct: 292 ----SLFDYCGEDFLKVIYDPAAMAAAENGFAEELAAGERKSLEKDNIV-CEINDLFLDA 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR------PTGLVDPPVEIRSARTQVE 569
            +          +S  P    LE   G    Q IR          +D   E       ++
Sbjct: 347 VQLGSYLDQGRRLSI-PF---LEIAGGRDAGQTIRLQVQDNSCFKLDVTAE---GEGVLK 399

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + +++     +   +L+    +  A+ L E L   N+ +     +            LR
Sbjct: 400 PLVEKLLARQAEQKHVLMICHQRNQAQRLYEMLSHYNLPLALSERDFPGEL-GRSDSQLR 458

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
                  + +  +  G  + E  LV I + +  G        I+  G
Sbjct: 459 -------IMVGDISRGFQLAEDQLVIIAEEEIFG------VRIKRRG 492



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 69/191 (36%), Gaps = 15/191 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + ++ATP    L      I +  I  T  VD            +D+  E  L   +   
Sbjct: 782 IMTLTATPIPRTLYMSLMGIRDLSIIDTPPVDRLAIKTFVARTSDDLIREAVLRELRRGG 841

Query: 585 ILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +  V  +      MAE L   + E  I V   H +++  E   ++     G+ ++L+  
Sbjct: 842 QIFFVHNRVQTIGAMAEHLQRIVPEAKIAVG--HGQMEEKELERVMLSFMHGESNLLLCT 899

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+           +    + 
Sbjct: 900 TIIESGLDIPTANTLIVNRADTFGLSQ----LYQLRGRVGRSKQRAYAY----LLIPGEG 951

Query: 700 AIDETTRRREK 710
           AI    R R K
Sbjct: 952 AISADARERLK 962


>gi|319945976|ref|ZP_08020225.1| transcription-repair coupling factor [Streptococcus australis ATCC
           700641]
 gi|319747784|gb|EFW00029.1| transcription-repair coupling factor [Streptococcus australis ATCC
           700641]
          Length = 1170

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 93/512 (18%), Positives = 197/512 (38%), Gaps = 72/512 (14%)

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           K  TMA V+E   +  +V+  ++  A +L S+         V  F+              
Sbjct: 40  KAITMATVVEDGHK-VLVLTSSQNEAERLASDLLGLLGEEKVYLFLGD------------ 86

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIVVSSVSCIYGIGSVESYSQMIVQLK 298
            D  + +    +++    R  A   LL  E+   ++ +       + + ++ S MI    
Sbjct: 87  -DNPLAEFVFASQERVFSRLEALDFLLAPEKEGIVIANVSGSRLLLPNPKTVSSMIQSFS 145

Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358
           +G+     EL  +L+   Y++      +G F + GD +++F +  +D  +R+  FG++I+
Sbjct: 146 VGEEKNLTELKDTLLAMGYQKVSQVSQQGEFSLRGDIVDLFEA-SQDFPYRMEFFGDEID 204

Query: 359 EISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE 418
            I  F P T + ++N++TI ++  S  +  +       K ++              +L++
Sbjct: 205 GIRTFSPETQRSLKNLDTITVHPVSDMLLTKDDFLRGQKNLE--------------KLIQ 250

Query: 419 AQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHV 478
                +  +Y  E+L      +   +  ++L+     +   TLF+Y+P+ + +F+D+ + 
Sbjct: 251 KSPNPEFKSYLTEVLTEAHHQRLHADSRKFLSLFY--QQTYTLFDYLPKHAPVFLDDYYK 308

Query: 479 TIPQISGMY-------RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            + Q +            D  +  + AE  +      DN  L        +P +   +  
Sbjct: 309 IMDQETRFDVEVANLLTEDLQKSRSFAEAQY----FADNSAL----LRTYKPASYFSNFQ 360

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
            G   L         Q             ++   +Q   + DEI+   +Q   ++L V +
Sbjct: 361 KGLGNLRFDALYSFNQYP-----------MQEFFSQFTLLKDEIDRFRKQDYTVILQVTS 409

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           K+  + L E+L +  I + Y+  +            L  G+  +++    L  G    + 
Sbjct: 410 KQGFQQLQEHLRDYGIDLDYLAPD-----------QLHPGQSQLVI--GGLARGFHFVDE 456

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +V I + +       +    QTI  A R  N
Sbjct: 457 KIVLITETEIFQKKVKRKIRRQTISNAERLKN 488



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 72/188 (38%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     T    + D I     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPTIIRDAIRREMDRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        ++H ++  +     + D   G++D+LV   +
Sbjct: 826 QVYYLYNKVDTIEQKVSELQELVPEASIGFVHGQMSEVRLENTLMDFIEGEYDILVTTTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I +AD  G L +   L   +GR+ R      I YA  + +  +   
Sbjct: 886 IETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKTLT 938

Query: 702 DETTRRRE 709
           + + +R E
Sbjct: 939 EVSEKRLE 946


>gi|328952684|ref|YP_004370018.1| transcription-repair coupling factor [Desulfobacca acetoxidans DSM
           11109]
 gi|328453008|gb|AEB08837.1| transcription-repair coupling factor [Desulfobacca acetoxidans DSM
           11109]
          Length = 1168

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 83/463 (17%), Positives = 163/463 (35%), Gaps = 47/463 (10%)

Query: 151 GDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLY 210
            D    + QLL  +  R+    L G++ +  + T+ ++   + RP +++ P+       Y
Sbjct: 2   PDNTVRLYQLLMAVEPRQTPLELYGLSPAAASLTLVRLWRELHRPILLVTPSTGQQVSFY 61

Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270
            + K F      +  VS      P    P  +     E + + +    R +A  +L  R 
Sbjct: 62  GDLKFFLSG--CQEVVSSDASTSPLYIFPEHENLPFVELTPDCKTASHRLAAAYALSARI 119

Query: 271 DCIVVS--SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           +  +++    + +  +   +  S +I  L +G+ +++   L+ L    Y R+ +   RG 
Sbjct: 120 NMPIITATPAALLQPLPPRDKLSTIIEYLVVGEEIDRDRFLAHLQAGGYTRRPLVEERGD 179

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           + V G  I+ FP        R   +G+ I+ +  F P T + +R+ E   +   S     
Sbjct: 180 YSVRGGVIDFFPPLSS-YPVRAEFWGDTIDSLRHFNPATQRSLRHFEDAIVLPVSEVFLD 238

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
             T   A +        RL  ++    L   QR E                  IE Y  Y
Sbjct: 239 SETQKAASR--------RLRSVKDPLILEYLQRREH--------------FPQIERYLPY 276

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
              +        L +Y+PE+ L+ + +    I Q    Y     ++    E         
Sbjct: 277 FYDKIEY-----LGDYLPENCLVGLWDPLN-ISQELKRYLAIESQERPGLEL------SQ 324

Query: 509 DNRPLRFEEWNCLRPTTIVVS--ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
           D+     E++  L   T+  S  + P             E           P        
Sbjct: 325 DDWQKFEEKFQTLHFHTVPFSDHSIPTPKVFHFSVAGNQELAASLAASATEP------GR 378

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
            +  + + +    + G +++L   ++  AE L+  L +R +  
Sbjct: 379 LIGPLANRLQQWRESGFQVILVCRSRSQAERLSLLLADRQVPT 421



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 25/209 (11%)

Query: 520 CLRPTTIVV---SATPGSWELEQCQGIIVEQIIRPTGLVDPPVE----IRSARTQVEDVY 572
                T+ V   SATP    L+     I E  I  T   +        +R   +    + 
Sbjct: 752 KKFRQTVDVLTLSATPIPRTLQMAMTGIREMSIINTAPAERQSIKTYLVRPNDS---IIC 808

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDL---TEYLYERNIRVR--YMHSEVKTLERIEIIRD 627
           + +    ++G ++           +L     YL     + R    H ++   +   ++  
Sbjct: 809 EAVRRELERGGQVFFV---HNRVHNLPSYVAYLKRLVPKARIGMAHGQMPEKDLEHVMWQ 865

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
               + DVLV   ++  GLDIP    + I  A   G  +      Q  GR  R       
Sbjct: 866 FWRREIDVLVCTAIIESGLDIPAANTIIINRAHALGLAQIY----QLRGRVGRGREQAYA 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNK 716
                  + +     E  +R +  +E  +
Sbjct: 922 YLLVPEEEHLNP---EAQKRLKALMEFTE 947



 Score = 44.7 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 71/219 (32%), Gaps = 18/219 (8%)

Query: 85  SMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQ 144
             S ++T++   Q +    + L  L  +   L   G  ++P               F+  
Sbjct: 556 GKSWEKTKKRVRQAVEKIARELVELYAARRVLP--GHHFSPPDPALRE--------FEAT 605

Query: 145 TDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMA 200
            D+  + DQ  AI  +L+ +   R   +L+ G  G GKT      A       +    + 
Sbjct: 606 FDFEETPDQLEAIQDVLEDMASDRVMDRLICGDVGYGKTEVALRAAFKAAMDGKQVAFLV 665

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           P  +LA Q    FK  F    +E           E      D    K   I   I   R 
Sbjct: 666 PTTVLAEQHLETFKRRFRSYPLEIRALSRFRAFKEQKRILADLSAGKVDII---IGTHRL 722

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
              + +  +   +++      +G+   E   +    + +
Sbjct: 723 LQ-KDVHFKELGLIIVDEEQRFGVSHKEKLKKFRQTVDV 760


>gi|148262223|ref|YP_001228929.1| transcription-repair coupling factor [Geobacter uraniireducens Rf4]
 gi|146395723|gb|ABQ24356.1| transcription-repair coupling factor [Geobacter uraniireducens Rf4]
          Length = 1159

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 96/525 (18%), Positives = 192/525 (36%), Gaps = 76/525 (14%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I QL+  + + E    + G+ GS   + +++++  +++  +++  +   A +L  E + +
Sbjct: 9   INQLVSALSTAEASISIAGLKGSAPAYVLSRLLVGVKKNFLIITSDAESAEELCRELRFY 68

Query: 217 FP-HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
               +AV YF             P  DT   + +S +  I   R +    L++     VV
Sbjct: 69  SGREDAVLYF-------------PPWDTAPFESASPHADITGQRLNVLFRLMDGRADAVV 115

Query: 276 SSVSC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +S+   +  +   ++  ++   +  G+ V +++LL  LVK  Y    +   RG F + G 
Sbjct: 116 TSLPAVMQKLLPRKTLGEISQYIVAGEEVAREKLLEKLVKLGYSHVPLVEDRGGFSIRGG 175

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++IFP  L     R+  FG+ ++ I  F P T + ++ +E + +  +   V     L  
Sbjct: 176 ILDIFPPDL-PAPVRIEFFGDFVDTIRTFDPATQRSLQPLEELVLLPSREVVISEEVL-- 232

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
                 +E   RL +      +   +R        LE L+       +E          P
Sbjct: 233 ------KEFPPRLKKRCDAIEIPATRR-----RDLLEQLQNAIYPPGVEYLQPLFH---P 278

Query: 455 GEPPPTLFEYIPE-------DSLLFVDESHVTIPQISGMYRGDFHR-------KATLAEY 500
           G    TLF+Y  +       D           I ++S   +  F R            + 
Sbjct: 279 GLE--TLFDYAGKELVKVIYDPAAMAAARERFIEELSAAEQRAFERDVISCETAELFLDA 336

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
                   + R L                   G+ E+ +   + V+         D  +E
Sbjct: 337 DSITKILSEGRRLAIPFLEVR-----------GTGEIGETFRLAVQ------DNSDLKLE 379

Query: 561 IRS-ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           + S     ++ + +++        ++L+    +  A+ L E L   ++        +   
Sbjct: 380 VSSDGEGVLKPLVEKVLSWLAAKNQVLMACHQRGQAQRLYEILSHYDLP-------LNIS 432

Query: 620 ERIEIIRDLRLG-KFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           ER       R   + D+LV    +  G  +PE GLV I + +  G
Sbjct: 433 EREFPAELGRKDNRLDILV--GDISRGFRLPEEGLVVIAEEEIFG 475



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 69/191 (36%), Gaps = 15/191 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + ++ATP    L      I +  I  T  VD            +++  E  L   +   
Sbjct: 772 IMTLTATPIPRTLYMSLMGIRDLSIIDTPPVDRLAIKTFVARSSDELIREAVLRELRRGG 831

Query: 585 ILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +  V  +      MAE L + + E  I V   H ++   E   ++     G+ ++L+  
Sbjct: 832 QVFFVHNRVQTIGAMAEHLQQIVPEARIAVG--HGQMDEKELERVMLGFMHGETNLLLCT 889

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+           +    + 
Sbjct: 890 TIIESGLDIPTANTLIVSRADTFGLSQ----LYQLRGRVGRSKQRAYAY----LLIPGEG 941

Query: 700 AIDETTRRREK 710
           AI    R R K
Sbjct: 942 AISADARERLK 952


>gi|229824545|ref|ZP_04450614.1| hypothetical protein GCWU000282_01889 [Catonella morbi ATCC 51271]
 gi|229785916|gb|EEP22030.1| hypothetical protein GCWU000282_01889 [Catonella morbi ATCC 51271]
          Length = 1183

 Score =  187 bits (474), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 93/524 (17%), Positives = 181/524 (34%), Gaps = 55/524 (10%)

Query: 155 AAIAQLLKGIHS---REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
            A    +K I+        QL+ G+  S +   +A++ +A  RP +++ P      QL  
Sbjct: 6   EAFQSAIKAINQTGPGSLPQLVTGIDDSARAVMLAQLFQARPRPLLIVEPIASKLGQLVD 65

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +     P  +V+ FV               +    + +  +E   R R      L     
Sbjct: 66  DLTQLLPQVSVQAFV-------------VEEALAIEFAFASEDQMRDRIQILNQLAHGEP 112

Query: 272 CIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
           CIVV++V+ +   +     + Q    L++GD+ E+++L S L    Y R  +    G F 
Sbjct: 113 CIVVTNVAGLRKQLTHPNQWRQAQHTLELGDNWERRQLESVLTAWGYHRASLVEQPGEFS 172

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V G  I+ FP   E    R+  F  +++ I  F   T   I N+++++I      +    
Sbjct: 173 VRGSIIDFFPVSAE-YPIRLDFFDTELDSIRAFNAETQSSIENLDSVQILPAQDVLFGLE 231

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                +  + E++K R ++  K+  L EA             ++     + ++    YL+
Sbjct: 232 AQQALLPRL-EDMKARALKKVKDQELREAME-----AGLSNQMDQLRHGEPLKYPHAYLS 285

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
                +   TL +Y+ E  LL + E      Q   +   D        + G  LP  +  
Sbjct: 286 -LAQDDQVVTLLDYLGEQGLLVLSEFDKLQQQALHLVEEDQFWIEQETQKGLLLPG-LAV 343

Query: 511 RPLRFEEWNCLRPTTIVVSATP---GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +              + +S      G   L                       +     Q
Sbjct: 344 KADFQACVRAYSGALLYLSVMHRGLGHQSLGAVHSFQYR-------------TLNPFFNQ 390

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +  V  E++   +QG  I + V +   A  +     E +I    +       +       
Sbjct: 391 MPLVKTEMDHWLKQGYTIQVAVGSLEQARKVEALFEEFHIGPSVVTEGQAQAK------- 443

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
                  + +G+  L  G ++P    V + + +    L+ + + 
Sbjct: 444 ------VINIGVGALSNGFELPVLKWVVVTEKELFNKLKKRQAR 481



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 7/102 (6%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV Y H ++  +E   ++ D   G +DVLV   ++  G+DIP    + + DAD  G L +
Sbjct: 859 RVAYAHGQMSEVELETVLVDFIQGAYDVLVTTTIIETGVDIPNVNTLFVEDADHMG-LST 917

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
              L   +GR  R      + YA  + +  +   + + +R +
Sbjct: 918 LYQLRGRVGRTNR------VAYAYLMYEPFKSLSEVSEKRLQ 953


>gi|322373973|ref|ZP_08048507.1| transcription-repair coupling factor [Streptococcus sp. C150]
 gi|321276939|gb|EFX54010.1| transcription-repair coupling factor [Streptococcus sp. C150]
          Length = 1168

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 165/440 (37%), Gaps = 45/440 (10%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QLL+G +GS K   MA  +       +++   +  A QL  +       + V  F     
Sbjct: 28  QLLMGFSGSSKAVVMASALSEQVPKILIVTSTQNEAEQLTGDLSAILGEDKVYSFF---- 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVE 288
                      D    +    + +    R  +   L+++     +V S V     + + +
Sbjct: 84  ---------ADDVSAAEFIFASPEKTHSRLESLNFLMDKEASGILVTSLVGTKLHLPNPK 134

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            Y    + L +G+  + + L   L    Y+R +     G F   GD ++I+    E + +
Sbjct: 135 VYKDSRIDLALGEEHDLEALSKHLSNIGYQRVEQVFSPGEFSRRGDILDIYELTAE-LPY 193

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FG++I+ I +F   + + + N+E + +      +  R     A    ++ L+  + 
Sbjct: 194 RLEFFGDEIDGIRQFDSDSQKSLDNLEHVIVSPADDIILTREDYQRA----EKALESEVS 249

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           + E   +            Y  E+L  T      ++  ++L+     +   TLF+Y+P+ 
Sbjct: 250 KSEGPHK-----------AYLEEVLSVTIDGHRHKDLRKFLSLFY--DKAYTLFDYLPKG 296

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           + +F+D+ H  + +   +     +      + G  L S ++     F+      P +   
Sbjct: 297 TPVFIDDFHKIVDRHGRLELEVANLLTEDLQQGKSL-SHLNYFVDSFKTLRNYHPASFFS 355

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           +   G   L+  +     Q             ++    Q   + DEI+   +    ++L 
Sbjct: 356 NFHKGLGNLKFDKLYQFTQYP-----------MQEFFNQFPLLVDEIHRYTKNKATVILQ 404

Query: 589 VLTKRMAEDLTEYLYERNIR 608
           V +++  + L E L E ++ 
Sbjct: 405 VGSEKQLKSLKETLEEYDLD 424



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 65/172 (37%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    II        PV+     T    + + +     +G 
Sbjct: 764 VLTLTATPIPRTLHMSMLGIRDLSIIETAPTNRYPVQTYVMETNPGLIREAVLREMDRGG 823

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +     L+E     R  ++H ++        + D   G +DVLV   +
Sbjct: 824 QVFYIYNRVETIDQKVSELHELVPEARIGFVHGQMSESMLENTLLDFLNGDYDVLVATTI 883

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+DI     + I +AD  G L +   L   +GR+ R   + ++   D +
Sbjct: 884 IETGIDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNRIAYAYLMYRPDKV 934


>gi|171778202|ref|ZP_02919431.1| hypothetical protein STRINF_00270 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283026|gb|EDT48450.1| hypothetical protein STRINF_00270 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 1169

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 89/524 (16%), Positives = 187/524 (35%), Gaps = 61/524 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I     G+ S    QL++G++G+ +   +A   +A +   +++   +    +L S+
Sbjct: 13  QNKLIQSWHAGV-SNLGRQLIMGLSGASRALAIASAYQANEEKVVIITSTQNEVEKLASD 71

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND- 271
             +    + V  F                D    +    +      R  A   L ++   
Sbjct: 72  LSSLIGEDKVYTFF-------------ADDVAAAEFIFASMDKAHSRLEALNFLQDKKQS 118

Query: 272 -CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             ++ S V     + + ++YS+  +   +G+     +++  L    Y++    +  G F 
Sbjct: 119 GILITSLVGTRVLLPNPKTYSESQLNFIVGEDYNLDKVVKVLSNVGYQKVSQVLNPGEFS 178

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
             GD ++I+     D  +R+  FG++++ I +F   T + + NVE + IY     +    
Sbjct: 179 RRGDIVDIYEI-TADYPYRLEFFGDEVDGIRQFDAQTQKSLSNVEQVTIYPADELILSEE 237

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
               A +  +  L+    + +                Y  E+   T      ++  R+L+
Sbjct: 238 DFARASQAFERYLETAKDDQQA---------------YLSELYAATQEQYRHQDIRRFLS 282

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
                E   TL +YIP+ + +F D+    + + +       +      + G  + S +  
Sbjct: 283 LFFAKE--WTLLDYIPKGTPVFFDDFQKLVDRNAKFDLEVANLLTEDLQRGKSMSSLV-Y 339

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
               ++E    +P T   +   G   L+  +     Q             ++    Q   
Sbjct: 340 FADIYKELRQYQPATFFSNFHKGLGNLKFDKLHNFTQYP-----------MQEFFNQFPL 388

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + DEIN   +    IL+   T+   E L E L E  + +            I    DL+ 
Sbjct: 389 LIDEINRYQKSRATILVQSDTQHGLERLQENLQEYGLDLP-----------IVGANDLQE 437

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
            +  ++VG   L  G    +  +V I   + E + +     I+ 
Sbjct: 438 HQAQLVVGN--LSNGFYFADDKIVLI--TEHEIYHKKVKRRIRR 477



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 65/172 (37%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     T    + + I     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPGLIREAIIREIDRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +     L E        ++H ++  ++    + D   G +DVLV   +
Sbjct: 826 QVFYVYNRVDTIDQKVSELQELVPEASIGFVHGQMSEIQLENTLMDFIEGVYDVLVATTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+DI     + I +AD  G L +   L   +GR+ R   + ++   D I
Sbjct: 886 IETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNRIAYAYLMYRPDKI 936


>gi|320547719|ref|ZP_08042004.1| transcription-repair coupling factor [Streptococcus equinus ATCC
           9812]
 gi|320447794|gb|EFW88552.1| transcription-repair coupling factor [Streptococcus equinus ATCC
           9812]
          Length = 1165

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 86/511 (16%), Positives = 180/511 (35%), Gaps = 60/511 (11%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           S    QL++G++G+ K   +A   +A +   +V+   +    +L S+       + V  F
Sbjct: 21  SNLGRQLIMGLSGASKALAIASAYQANEEKIVVLTSTQHEVEKLASDLSGLIGEDKVYTF 80

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL--LERNDCIVVSSVSCIYG 283
                           D    +    +      R  A   L    +   ++ S V     
Sbjct: 81  F-------------ADDVAAAEFIFASMDKAHSRLEALNFLQDTTQTGILITSLVGTRVL 127

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           + + ++Y++  ++  +G+     +++  L    YK+    +  G F   GD ++I+    
Sbjct: 128 LPNPKAYAESQLKFVVGEDYNLDKVVKVLSNVGYKKVSQALNPGEFSRRGDIVDIYEV-T 186

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
            D  +R+  FG++++ I EF   T + + NV+ + IY     +        A    +   
Sbjct: 187 ADYPYRLEFFGDEVDGIREFDAETQKSLSNVDQVTIYPADELILSEEDFTRASTAFE--- 243

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
                      + LE  +  Q   Y  E+  TT      ++  R+L+     E   TL +
Sbjct: 244 -----------KYLETAKDAQH-AYLSELYATTQEHYRHQDIRRFLSLFYAKE--WTLLD 289

Query: 464 YIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP 523
           YIP+ + +F D+    + + +       +      + G  + S +      +++    +P
Sbjct: 290 YIPKGTPVFFDDYQKIVDRNAKFDLEIANLLTEDLQRGKAVSSLV-YFADIYKDLRQYQP 348

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T   +   G   L+        Q             ++    Q   + DEIN   +   
Sbjct: 349 ATFFSNFHKGLGNLKFDSLHNFTQYP-----------MQEFFNQFPLLIDEINRYQKSRA 397

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
            IL+   T+   E L E L E  + +  + ++     + ++I                L 
Sbjct: 398 TILIQSDTQHGLERLQENLQEYGLDLPMVSADEVQEHQAQLI-------------TGNLS 444

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
            G    +  +V I   + E + +     I+ 
Sbjct: 445 NGFYFADEKIVLI--TEHEIYHKKVKRRIRR 473



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 70/186 (37%), Gaps = 10/186 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     T    + + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPGLIREAIIREMDRGG 821

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +     L E        ++H ++  ++    + D   G +DVLV   +
Sbjct: 822 QVFYVYNRVDTIDQKVSELQELVPEASIGFVHGQMSEIQLENTLMDFIEGVYDVLVATTI 881

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I +AD  G L +   L   +GR+ R      I YA  + +  +   
Sbjct: 882 IETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKNLT 934

Query: 702 DETTRR 707
           + + +R
Sbjct: 935 EVSEKR 940


>gi|322515787|ref|ZP_08068732.1| exopolyphosphatase [Streptococcus vestibularis ATCC 49124]
 gi|322125749|gb|EFX97067.1| exopolyphosphatase [Streptococcus vestibularis ATCC 49124]
          Length = 1195

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 164/440 (37%), Gaps = 45/440 (10%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G +GS K   MA  +        ++   +  A QL  +       + V  F     
Sbjct: 28  QLVMGFSGSSKAVVMASALSNQVPKIFIVTSTQNEAEQLVGDLSAILGEDKVYSFF---- 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVE 288
                      D    +    + +    R  +   L+++     +V S V     + + E
Sbjct: 84  ---------ADDVSAAEFIFASPEKTHSRLESLNFLIDKETSGILVTSLVGTKLHLPNPE 134

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            Y    + L +G+  + + L   L    Y+R +  +  G F   GD ++I+    E + +
Sbjct: 135 IYKDSRIDLTLGEEHDLEALSKHLTHIGYQRVEQVLSPGEFSRRGDILDIYELTAE-LPY 193

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FG++I+ I +F   + + + N++ + I      +  R     A    ++ L+  + 
Sbjct: 194 RLEFFGDEIDGIRQFDSDSQKSLNNLDHVAISPADDIILTREDYQRA----EKALESAVS 249

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           + E   +            Y  E+L  T      ++  ++L+     +   TLF+Y+P+ 
Sbjct: 250 KAEGPHK-----------AYLEEVLSVTIDGYRHKDLRKFLSLFY--DKAYTLFDYLPKG 296

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           + +FVD+    + +   +     +        G  L S ++     F+     +P +   
Sbjct: 297 TPVFVDDFQKIVDRHGRLELEVANLLTEDLHQGKSL-SYLNYFVDSFKTLRNYQPASFFS 355

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           +   G   L+  +     Q             ++    Q   + DEI+   +    ++L 
Sbjct: 356 NFHKGLGNLKFDKLYQFTQYP-----------MQEFFNQFPLLVDEIHRYTKNKATVILQ 404

Query: 589 VLTKRMAEDLTEYLYERNIR 608
           V +++  + L E L E ++ 
Sbjct: 405 VGSEKQLKSLKETLEEYDLD 424



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    II        PV+     T    + + I     +G 
Sbjct: 764 VLTLTATPIPRTLHMSMLGIRDLSIIETAPTNRYPVQTYVMETNPGLIREAILREMDRGG 823

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          +     L+E     R  ++H ++  +     + D   G +DVLV   +
Sbjct: 824 QIFYIYNRVETIDQKVSELHEIVPEARIGFVHGQMSEVMLENTLLDFLNGDYDVLVATTI 883

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+DI     + I +AD  G L +   L   +GR+ R   + ++   D +
Sbjct: 884 IETGIDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNRIAYAYLMYRPDKV 934


>gi|312866818|ref|ZP_07727031.1| putative transcription-repair coupling factor [Streptococcus
           parasanguinis F0405]
 gi|311097601|gb|EFQ55832.1| putative transcription-repair coupling factor [Streptococcus
           parasanguinis F0405]
          Length = 764

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 105/677 (15%), Positives = 231/677 (34%), Gaps = 114/677 (16%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q + +    +G+    +  L+LG++ + K   MA   +++++ A+++  +   A +L S+
Sbjct: 9   QNSNLLSWQQGLQKTNRE-LILGLSATTKAIVMASAFDSIEK-AVLITSSYNEAERLASD 66

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-ND 271
           F      + V  F+               D  + +    +++    R  A   L ++   
Sbjct: 67  FIALLGEDKVHTFLGD-------------DNPLAEFVFASQERKFARLEALNFLCQKDRQ 113

Query: 272 CIVVSSVSCIYGI-GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            I+V++VS I  +  S + ++  I QLK+G  ++   L  +L K  Y++    + +G F 
Sbjct: 114 GILVTNVSGIKLLLPSPKVFASSIFQLKVGQEIDLTTLSETLQKIGYQKVSQVLQQGEFS 173

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++IF    +   +R+  FG++I+ I  F P + + + NVE +++ A S  +    
Sbjct: 174 LRGDILDIFEID-QLQPYRIEFFGDEIDGIRIFDPESQRSVENVEEVQLKAVSDLLLQEE 232

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                 + I++  +    E  K         + QR  Y             +  +  +  
Sbjct: 233 DFIRGQQQIEQLQEQSANEEFKSYLAEILGDISQRKLY-----------PDLRKFISFFY 281

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
                E   TLF+Y+P+ + +F+D+      QI+     D     T   +  R  S    
Sbjct: 282 -----EKQYTLFDYLPKHTPVFLDDYQKIADQIARFEL-DTANLLTEDLHKNRASSRQVY 335

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
                       P T   +   G   L+        Q             ++    Q + 
Sbjct: 336 FADTSTTLRKYTPATYFSNFQKGLGNLKFDHLYQFNQYP-----------MQEFFGQFDL 384

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + +EI    +    +++   +    + L + L E  IR+ Y+  +    +  +++     
Sbjct: 385 LKEEIERYRKSNYTVIVQATSHHNLQQLHKNLEEYGIRLDYIDGDTIIPQASQLV----- 439

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN------- 683
                   +  L  G    +  +V I +++       +    Q I  A R  N       
Sbjct: 440 --------VGRLAHGFQFVDEKIVYITESEIYQKKIKRKIRRQNISNAERLKNYNELEKG 491

Query: 684 SKVILYADTITKSIQ-LAIDETTRRR------------------EKQL--EHNKKHNINP 722
             V+     I + +    I+ +   R                  + Q+  ++       P
Sbjct: 492 DYVVHQVHGIGQYLGIETIEISGVHRDYVSIQYQNGDRISIPVDQIQMLSKYVASDGKTP 551

Query: 723 Q-----------------SVKEKIME----------VIDPILLEDAATTNISIDAQQLSL 755
           +                 +  E I +           ++            + +     +
Sbjct: 552 KINKLNDGRFQKTKQRVQTQVEDIADDLIKLYAERSQLEGFAYSSDDENQEAFEQDFPYI 611

Query: 756 SKKKGKAHLKSLRKQMH 772
                   ++ ++K M 
Sbjct: 612 ETDDQLRSIEEIKKDME 628



 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM- 192
           ++   F+    Y  + DQ  +I ++ K + S     +LL+G  G GKT   M    +A+ 
Sbjct: 599 ENQEAFEQDFPYIETDDQLRSIEEIKKDMESNRPMDRLLVGDVGFGKTEVAMRAAFKAVN 658

Query: 193 -QRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
             +   V+ P  +LA Q Y+ FK  F   AVE
Sbjct: 659 DHKQVAVLVPTTVLAQQHYANFKERFESFAVE 690


>gi|332365100|gb|EGJ42865.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK355]
          Length = 1167

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 96/532 (18%), Positives = 191/532 (35%), Gaps = 73/532 (13%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E   +  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND- 271
             +    + V  F+               DT I +    +++    R  A   L++    
Sbjct: 71  LISLLGEDKVYTFL-------------ADDTPIAEFVFASQEKIFSRLDALNFLIDHQKS 117

Query: 272 -CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             +V +  +    +     +    + LK+G   +   L+  L +  YKR    + +G + 
Sbjct: 118 GILVTNIAASKLLLPDPIDFKTTNINLKVGQEYDLNNLVKMLSRSGYKRVSQVLSQGEYS 177

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++IF     D  +R+  FG++I+ I  F P     I NVE+I I   S  +    
Sbjct: 178 LRGDILDIFERSA-DSPYRLEFFGDEIDGIRIFNPENQTSIENVESILIKPASDILLSEK 236

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                ++ ++  L+  +              L+  +   L   +       I  +  Y  
Sbjct: 237 DYARGLENLEVILEKAVD-----------PALKSYLEELLISAKERFYHADIRKFLSYFY 285

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG-------DFHRKATLAEYGFR 503
            +       T+ +Y+P  S +F D+    + + +            D      L      
Sbjct: 286 QKE-----WTILDYLPVHSPVFFDDFQKIVDRHAQFELETAGLLTDDLQNCKAL------ 334

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
             S       +++++   +P T   S   G   L+        Q         P  E  S
Sbjct: 335 --SSQKYFADKYQDYRQYKPATFFSSFQKGLGNLKFDALYQFNQY--------PMQEFFS 384

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q   + +EIN   + G  I+L   +    + L + L E +I + Y+           
Sbjct: 385 ---QFPLLKEEINRYKKSGYTIILQANSSAGLQSLHKNLQEYDIYLDYI----------- 430

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             ++  + K  V +    L +G +  +  +V I + +       +    Q I
Sbjct: 431 --KETEIHKNAVQLIEGNLVQGFNFVDEKIVLITEYEIIHKKIKRKIRRQNI 480



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 73/188 (38%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     +    + + I     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAILREIDRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        Y+H ++  +     + D   G++D+LV   +
Sbjct: 826 QVYYLYNKVDTIEQKVSELRELIPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G L +   L   +GR+ R      I YA  + +  ++  
Sbjct: 886 IETGVDIPNANTLFVENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKILT 938

Query: 702 DETTRRRE 709
           + + +R E
Sbjct: 939 EVSEKRLE 946


>gi|126701125|ref|YP_001090022.1| transcription-repair coupling factor [Clostridium difficile 630]
 gi|255102711|ref|ZP_05331688.1| transcription-repair coupling factor [Clostridium difficile
           QCD-63q42]
 gi|255308532|ref|ZP_05352703.1| transcription-repair coupling factor [Clostridium difficile ATCC
           43255]
 gi|115252562|emb|CAJ70405.1| Transcription-repair coupling factor (TRCF ATP-dependent helicase
           mfd) [Clostridium difficile]
          Length = 1128

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 78/507 (15%), Positives = 179/507 (35%), Gaps = 56/507 (11%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             ++  I + +   L+ G+    K      +   + R  I +  + + A ++Y +   + 
Sbjct: 16  KDIINCIKNTKGSLLVNGLLPVQKPHISYSIFNDLSRQMIFITSSDLEAKKVYEDLSFYM 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
             + VEY                 D Y     + +   +  +      L  +   I+V+S
Sbjct: 76  -EDKVEYLGF-------------QDIYFYHLDAKDRNEEAKKLKVLLKLANKEKIILVTS 121

Query: 278 VSC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           +   +      +     +   K+GDS++ ++L   LV   Y+R       G F + G  I
Sbjct: 122 IEAVLRKYIPKQVLLDSVSHYKVGDSLDLEKLTEKLVSLGYERVSKIEGFGQFSIRGGII 181

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++F     +   R+ +F ++I+ I  F   + + I  ++   I  +  ++ P      A+
Sbjct: 182 DVFSLEYTN-PIRMELFDDEIDSIRTFDVYSQKSIDKLQQFSITPSREFIYP-EKTTDAL 239

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
             +K+E                 +  ++    +++ + +    + +ENY  Y+      E
Sbjct: 240 VKLKKE---------------TTKNTDEGTFQNIDYISSKTYFEGVENYIDYIYP----E 280

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              ++F Y+ +D+++F+++      +                E G  + +        + 
Sbjct: 281 ENKSIFTYLADDAIVFINDITRLKERCENYINEFRENYKLNLERGLAIKNQGKLLYH-YT 339

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           +   L     VV  +     +       ++ II          E+ +   +V+ + +E+N
Sbjct: 340 DLEYLVKDKSVVLNSLLPKSIN---NFSIKSIINFESR-----EVPTFNGKVDLLVEELN 391

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G +I+L   T   A  L + L ++ +              I   RD+ +    V+
Sbjct: 392 RLKYNGYKIILATNTLERANKLGKDLLDKGLETT-----------ISKDRDIEIKSSQVI 440

Query: 637 VGINLLREGLDIPECGLVAILDADKEG 663
           +    +  G        V I D +  G
Sbjct: 441 IVPAHINSGFQYKSIKFVVITDNEMIG 467



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI    +I        PV      ++   + DEI     +G 
Sbjct: 766 VLTLSATPIPRTLHMSLSGIRDMSVIEEPPQERHPVITYVTESKESVIQDEIERELSRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E++   + +   + RV   H  + +     II       +DVLV   +
Sbjct: 826 QVFFVYNRVEHIEEMASMIQKLVPDARVAVAHGRMTSKSLENIILGFLNKDYDVLVCTTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ--- 698
           +  G+DI     + I DADK G  +    L   +GR++R   + ++   D     I    
Sbjct: 886 IETGMDISNANTMIIYDADKMGLAQ-LYQLRGRVGRSSRQGYAYLLYEKDKTLSEIAEKR 944

Query: 699 -LAIDE 703
             AI E
Sbjct: 945 LKAIRE 950


>gi|255657458|ref|ZP_05402867.1| transcription-repair coupling factor [Clostridium difficile
           QCD-23m63]
 gi|296449053|ref|ZP_06890843.1| transcription-repair coupling factor [Clostridium difficile NAP08]
 gi|296879876|ref|ZP_06903849.1| transcription-repair coupling factor [Clostridium difficile NAP07]
 gi|296262146|gb|EFH08951.1| transcription-repair coupling factor [Clostridium difficile NAP08]
 gi|296429165|gb|EFH15039.1| transcription-repair coupling factor [Clostridium difficile NAP07]
          Length = 1128

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 77/507 (15%), Positives = 178/507 (35%), Gaps = 56/507 (11%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             ++  I + +   L+ G+    K      +   + R  I +  + + A ++Y +   + 
Sbjct: 16  KDIINCIKNTKGSLLVNGLLPVQKPHISYSIFNDLSRQMIFITSSDLEAKKVYEDLSFYI 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
             + VEY                 D Y     + +   +  +      L  +   I+V+S
Sbjct: 76  -EDKVEYLGF-------------QDIYFYHLDAKDRNEEAKKLKVLLKLANKEKIILVTS 121

Query: 278 VSC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           +   +      +     +   K+GD+++ + L   LV   Y+R       G F + G  I
Sbjct: 122 IEAVLRKYIPKQVLLDSVSHYKVGDNLDLERLTEKLVSLGYERVSKIEGFGQFSIRGGII 181

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++F     +   R+ +F ++I+ I  F   + + I  ++   I  +  ++ P      A+
Sbjct: 182 DVFSLEYTN-PIRMELFDDEIDSIRTFDVYSQKSIDKLQQFSITPSREFIYP-EKTTDAL 239

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
             +K+E                 +  ++    +++ + +    + +ENY  Y+      E
Sbjct: 240 VKLKKE---------------TTKNTDEGTFQNIDYISSKTYFEGVENYIDYIYP----E 280

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              ++F Y+ +D+++F+++      +                E G  + +        + 
Sbjct: 281 ENKSIFTYLADDAIVFINDITRLKERCENYINEFRENYKLNLERGLAIKNQGKLLYH-YT 339

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           +   L     VV  +     +       ++ II          E+ +   +V+ + +E+N
Sbjct: 340 DLEYLVKDKSVVLNSLLPKSIN---NFSIKSIINFESR-----EVPTFNGKVDLLVEELN 391

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G +I+L   T   A  L + L ++ +              I   RD+ +    V+
Sbjct: 392 RLKYNGYKIILATNTLERANKLGKDLLDKGLETT-----------ISKDRDIEIKSSQVI 440

Query: 637 VGINLLREGLDIPECGLVAILDADKEG 663
           +    +  G        V I D +  G
Sbjct: 441 IVPAHINSGFQYKSIKFVVITDNEMIG 467



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI    +I        PV      ++   + DEI     +G 
Sbjct: 766 VLTLSATPIPRTLHMSLSGIRDMSVIEEPPQERHPVITYVTESKESVIQDEIERELSRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E++   + +   + RV   H  + +     II       +DVLV   +
Sbjct: 826 QVFFVYNRVEHIEEMASMIQKLVPDARVAVAHGRMTSKSLENIILGFLNKDYDVLVCTTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ--- 698
           +  G+DI     + I DADK G  +    L   +GR++R   + ++   D     I    
Sbjct: 886 IETGMDISNANTMIIYDADKMGLAQ-LYQLRGRVGRSSRQGYAYLLYEKDKTLSEIAEKR 944

Query: 699 -LAIDE 703
             AI E
Sbjct: 945 LKAIRE 950


>gi|228476811|ref|ZP_04061459.1| transcription-repair coupling factor [Streptococcus salivarius
           SK126]
 gi|228251548|gb|EEK10685.1| transcription-repair coupling factor [Streptococcus salivarius
           SK126]
          Length = 1168

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 167/440 (37%), Gaps = 45/440 (10%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G +GS K   MA  +       +++   +  A QL  +       + V  F +   
Sbjct: 28  QLVMGFSGSSKAVVMASALSEQVPKILIVTSTQNEAEQLTGDLSAILGEDKVYSFFTD-- 85

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVE 288
                      D    +    + +    R  +   L+++     +V S V     + + E
Sbjct: 86  -----------DVVAAEFIFASPEKTHSRLESLNFLMDKESSGILVTSLVGTKLHLPNPE 134

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            Y    + L +G+  + + L   L    Y+R +  ++ G F   GD ++I+    E + +
Sbjct: 135 VYKDSRIDLTLGEEHDLEALSKHLTHIGYQRVEQVLLPGEFSRRGDILDIYELTAE-LPY 193

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FG++I+ I +F   + + + N+E I +      +  R     A    ++ L+  + 
Sbjct: 194 RLEFFGDEIDGIRQFDSDSQKSLDNLEHIIVSPADDIILTREDYQRA----EKALESAVS 249

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           + E   +            Y  E+L  T      ++  ++L+     +   TLF+Y+P+ 
Sbjct: 250 KAEGPHK-----------AYLEEVLSVTIDGYRHKDLRKFLSLFY--DKAYTLFDYLPKG 296

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           + +F+D+    + +   +     +        G  L S ++     F+     +P +   
Sbjct: 297 TPVFIDDFQKIVDRHGRLELEVANLLTEDLHQGKSL-SHLNYLVDSFKTLRNYQPASFFS 355

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           +   G   L+  +     Q             ++    Q   + DEI+   +    ++L 
Sbjct: 356 NFHKGLGNLKFDKLHQFTQYP-----------MQEFFNQFPLLVDEIHRYTKNKATVILQ 404

Query: 589 VLTKRMAEDLTEYLYERNIR 608
           V +++  + L E L E ++ 
Sbjct: 405 VGSEKQLKSLKETLEEYDLD 424



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    II        PV+     T    + + I     +G 
Sbjct: 764 VLTLTATPIPRTLHMSMLGIRDLSIIETAPTNRYPVQTYVMETNPGLIREAILREMDRGG 823

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          +     L+E     R  ++H ++  +     + D   G +DVLV   +
Sbjct: 824 QIFYVYNRVETIDQKVSELHELVPEARIGFVHGQMSEVMLENTLLDFLNGDYDVLVATTI 883

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+DI     + I +AD  G L +   L   +GR+ R   + ++   D +
Sbjct: 884 IETGIDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNRIAYAYLMYRPDKV 934


>gi|289644706|ref|ZP_06476767.1| UvrB/UvrC protein [Frankia symbiont of Datisca glomerata]
 gi|289505495|gb|EFD26533.1| UvrB/UvrC protein [Frankia symbiont of Datisca glomerata]
          Length = 195

 Score =  184 bits (466), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 82/192 (42%), Positives = 112/192 (58%), Gaps = 30/192 (15%)

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           INLLREGLD+PE  LV+ILDADKEGFLRS  SLIQTIGRAARNV+ +V +YAD +T S++
Sbjct: 1   INLLREGLDLPEVSLVSILDADKEGFLRSDKSLIQTIGRAARNVSGQVHMYADKVTPSMR 60

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID--------- 749
            AI+ET RRR KQ+ +N +  ++PQ +++K+++++D ++ E A    I            
Sbjct: 61  RAIEETNRRRVKQIAYNTERGVDPQPLRKKVIDILDDLVRESAEGEVIGGGGRARSRGKV 120

Query: 750 -------------------AQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
                              AQ   +        ++ L  QMH AA  L FE AAR+RDEI
Sbjct: 121 PAPGMSSKAGRDGAVGRHAAQLAGMPSADLAQLIRQLDDQMHEAAKELQFELAARLRDEI 180

Query: 791 KRLKSSPYFQGL 802
             LK     +G+
Sbjct: 181 AELKKE--LRGM 190


>gi|322390530|ref|ZP_08064048.1| transcription-repair coupling factor [Streptococcus parasanguinis
           ATCC 903]
 gi|321142804|gb|EFX38264.1| transcription-repair coupling factor [Streptococcus parasanguinis
           ATCC 903]
          Length = 1164

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 103/677 (15%), Positives = 236/677 (34%), Gaps = 114/677 (16%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q + +    +G+    +  L+LG++ + K   MA   +++++ A+++  +   A +L S+
Sbjct: 9   QNSNLLSWQQGLQKNNRE-LILGLSATTKAIVMASAFDSIEK-AVLITSSYNEAERLASD 66

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-ERND 271
           F        V  F+               D  + +    +++    R  A   L  E   
Sbjct: 67  FIALLGEEKVHTFLGD-------------DNPLAEFVFASQERQFSRLEALNFLCQEDRQ 113

Query: 272 CIVVSSVSCIYGI-GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            I+V++VS I  +  S + ++  I QLK+   ++   L  +L K  Y++    + +G F 
Sbjct: 114 GILVTNVSGIKLLLPSPKVFASSIFQLKVDQEIDLTTLSETLQKIGYQKVSQVLQQGEFS 173

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++IF    +   +R+  FG++I+ I  F P + + + NVE +++ A S  +    
Sbjct: 174 LRGDILDIFEID-QLQPYRIEFFGDEIDGIRIFDPESQRSVENVEEVQLKAVSDLLLQEE 232

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                 +         + +L+++    E +      +Y  E+L      +   +  ++++
Sbjct: 233 DFIRGQQQ--------IEQLQEQSANEEFK------SYLAEILGDISQRKLHPDLRKFIS 278

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
                E   TLF+Y+P+ + +F+D+      QI+     D     T   +  R  S    
Sbjct: 279 FFY--EKQYTLFDYLPKHTPVFLDDYQKIADQIARFEL-DTANLLTEDLHKNRASSRQVY 335

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
                       P T   +   G   L+        Q             ++    Q + 
Sbjct: 336 FADTSTTLRKYTPATYFSNFQKGLGNLKFDHLYQFNQYP-----------MQEFFGQFDL 384

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + +EI    +    +++   +    + L + L E  IR+ Y+  +    +  +++     
Sbjct: 385 LKEEIERYRKSNYTVIIQATSHHNLQQLHKNLEEYGIRLDYIDGDTIIPQASQLV----- 439

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN------- 683
                   +  L  G    +  +V I +++       +    Q I  A R  N       
Sbjct: 440 --------VGGLAHGFQFVDEKIVYITESEIYQKKIKRKIRRQNISNAERLKNYNELEKG 491

Query: 684 SKVILYADTITKSIQ-LAIDETTRRR------------------EKQL--EHNKKHNINP 722
             V+     I + +    I+ +   R                  + Q+  ++       P
Sbjct: 492 DYVVHQVHGIGQYLGIETIEISGVHRDYVSIQYQNGDRISIPVDQIQMLSKYVASDGKTP 551

Query: 723 Q--------------SVKEKIMEV-------------IDPILLEDAATTNISIDAQQLSL 755
           +               V+ ++ ++             ++            + +     +
Sbjct: 552 KINKLNDGRFQRTKQKVQTQVEDIADDLIKLYAERSQLEGFAYSQDDENQEAFEQDFPYI 611

Query: 756 SKKKGKAHLKSLRKQMH 772
                   ++ ++K M 
Sbjct: 612 ETDDQLRSIEEIKKDME 628



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     T    + D +     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTFVLETNPTIIRDAVLREMDRGG 821

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +           E    +L E + E +I   ++H ++  +     + D   G++DVLV  
Sbjct: 822 QAYYLYNKVDTIEQKVSELKELIPEASI--GFVHGQMSEVRLENTLLDFINGEYDVLVTT 879

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I +AD  G L +   L   +GR+ R      I YA  + +  + 
Sbjct: 880 TIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKS 932

Query: 700 AIDETTRRRE 709
             + + +R E
Sbjct: 933 LTEVSEKRLE 942



 Score = 39.3 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM- 192
           ++   F+    Y  + DQ  +I ++ K + S     +LL+G  G GKT   M    +A+ 
Sbjct: 599 ENQEAFEQDFPYIETDDQLRSIEEIKKDMESNRPMDRLLVGDVGFGKTEVAMRAAFKAVN 658

Query: 193 -QRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
             +   V+ P  +LA Q Y+ FK  F   AVE
Sbjct: 659 DHKQVAVLVPTTVLAQQHYANFKERFESFAVE 690


>gi|254977126|ref|ZP_05273598.1| transcription-repair coupling factor [Clostridium difficile
           QCD-66c26]
 gi|255094455|ref|ZP_05323933.1| transcription-repair coupling factor [Clostridium difficile CIP
           107932]
 gi|255316206|ref|ZP_05357789.1| transcription-repair coupling factor [Clostridium difficile
           QCD-76w55]
 gi|255518868|ref|ZP_05386544.1| transcription-repair coupling factor [Clostridium difficile
           QCD-97b34]
 gi|255652047|ref|ZP_05398949.1| transcription-repair coupling factor [Clostridium difficile
           QCD-37x79]
 gi|260685021|ref|YP_003216306.1| transcription-repair coupling factor [Clostridium difficile CD196]
 gi|260688679|ref|YP_003219813.1| transcription-repair coupling factor [Clostridium difficile R20291]
 gi|260211184|emb|CBA66656.1| transcription-repair coupling factor [Clostridium difficile CD196]
 gi|260214696|emb|CBE07346.1| transcription-repair coupling factor [Clostridium difficile R20291]
          Length = 1128

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 78/507 (15%), Positives = 178/507 (35%), Gaps = 56/507 (11%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             ++  I + +   L+ G+    K      +   + R  I +  + + A ++Y +   + 
Sbjct: 16  KDIINCIKNTKGSLLVNGLLPVQKPHISYSIFNDLSRQMIFITSSDLEAKKVYEDLSFYM 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
             + VEY                 D Y     + +   +  +      L  +   I+V+S
Sbjct: 76  -EDKVEYLGF-------------QDIYFYHLDAKDRNEEAKKLKVLLKLANKEKIILVTS 121

Query: 278 VSC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           +   +      +     +   K+GDS++ ++L   LV   Y+R       G F + G  I
Sbjct: 122 IEAVLRKYIPKQVLLDSVSHYKVGDSLDLEKLTEKLVSLGYERVSKIEGFGQFSIRGGII 181

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++F     +   R+ +F ++I+ I  F   + + I  ++   I  +  ++ P      A+
Sbjct: 182 DVFSLEYTN-PIRMELFDDEIDSIRTFDVYSQKSIDKLQQFSITPSREFIYP-EKTTDAL 239

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
             +K+E                 +  ++    +++ + +    +  ENY  Y+      E
Sbjct: 240 VKLKKE---------------TTKNTDEGTFQNIDYISSKTYFEGAENYIDYIYP----E 280

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              ++F Y+ +D+++F+++      +                E G  + +        + 
Sbjct: 281 ENKSIFTYLADDAIVFINDITRLKERCENYINEFRENYKLNLERGLAIKNQGKLLYH-YT 339

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           +   L     VV  +     +       ++ II          E+ +   +V+ + +E+N
Sbjct: 340 DLEYLVKDKSVVLNSLLPKSIN---NFSIKSIINFESR-----EVPTFNGKVDLLVEELN 391

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G +I+L   T   A  L + L ++ +              I   RD+ +    V+
Sbjct: 392 RLKYNGYKIILATNTLERANKLGKDLLDKGLETT-----------ISKDRDIEIKSSQVI 440

Query: 637 VGINLLREGLDIPECGLVAILDADKEG 663
           +    +  G        V I D +  G
Sbjct: 441 IVPAHINSGFQYKSIKFVVITDNEMIG 467



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI    +I        PV      ++   + DEI     +G 
Sbjct: 766 VLTLSATPIPRTLHMSLSGIRDMSVIEEPPQERHPVITYVTESKESVIQDEIERELSRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E++   + +   + RV   H  + +     II       +DVLV   +
Sbjct: 826 QVFFVYNRVEHIEEMASMIQKLVPDARVAVAHGRMTSKSLENIILGFLNKDYDVLVCTTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ--- 698
           +  G+DI     + I DADK G  +    L   +GR++R   + ++   D     I    
Sbjct: 886 IETGMDISNANTMIIYDADKMGLAQ-LYQLRGRVGRSSRQGYAYLLYEKDKTLSEIAEKR 944

Query: 699 -LAIDE 703
             AI E
Sbjct: 945 LKAIRE 950


>gi|157150453|ref|YP_001451365.1| transcription-repair coupling factor [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075247|gb|ABV09930.1| transcription-repair coupling factor [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 1167

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 96/528 (18%), Positives = 197/528 (37%), Gaps = 65/528 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I    K ++ + + QLL+G++GS K   +A  ++  Q+  +VM      A +L S+
Sbjct: 13  QNQQILDWKKNLNQKTR-QLLMGLSGSTKALAIASALDEHQK-ILVMTSGYSEAEKLSSD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND- 271
             +      V  F++  D      ++  +   I             R  A   LL+ N+ 
Sbjct: 71  LISLLGEEKVYNFLA--DDAPMAEFIFSSQEKIYA-----------RLGALNFLLDDNES 117

Query: 272 -CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             +V +  +    + +       I++LK+G       L++ L+K  Y+++     +G F 
Sbjct: 118 GILVTNLSASRLFLPNPNELKSSILELKVGQEYSLDSLVNFLIKIGYRKESQVFNQGEFS 177

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++IF        +R+  FG++I+ I  F   +   I N+  + I+  +  +    
Sbjct: 178 LRGDILDIFDKDSIS-PYRLEFFGDEIDGIRIFDSESQTSIENLNQVLIHPANDILLADE 236

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
               A K I+E             +  +  RL+  +   L+ ++          +  Y  
Sbjct: 237 DYLRAQKKIEE-----------AVKASQDSRLKSYLEEILQDVKKRQLHPDSRKFLSYFY 285

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
                E   T+ +Y+P+ + +F D+    + + +          AT+   G +    + N
Sbjct: 286 -----EKEWTILDYLPKHTPIFFDDFQKIMERNAQFEME----AATILTEGLQSSKAVSN 336

Query: 511 RPLR---FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +      + ++   +P T + +   G   L+        Q         P  E  S   Q
Sbjct: 337 QKYFVNAYPDFRNYKPATFLSNFHKGLGNLKLDSLYQFNQY--------PMQEFFS---Q 385

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
              + DEI+   + G  ++L   +    + L + L E +I+  Y+              D
Sbjct: 386 FPLLKDEIDRYKKAGSTVILQASSLSSLQSLHKTLQEYDIQAEYI-------------ND 432

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             + K  V +    L +G +  +  LV I + +       +    Q +
Sbjct: 433 KEIHKNSVQIIQGNLNQGFNFVDQKLVLITEYEIFQKKVKRRVRRQNV 480



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 11/183 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     +    + D I     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTIIRDAILREIDRGG 825

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E    +L E + E +I   ++H ++  +     + D   G++DVLV  
Sbjct: 826 QVYYLYNKVDTIEQKVAELKELIPEASI--GFVHGQMSEIRLENTLIDFINGEYDVLVTT 883

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I +AD  G     ++L Q  GR  R+       +     K++  
Sbjct: 884 TIIETGVDIPNANTLFIENADHMGL----STLYQLRGRVGRSNRIAYAYFMYRPDKTLTE 939

Query: 700 AID 702
             +
Sbjct: 940 VAE 942



 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 4/100 (4%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FT 184
             +S ++  ++   F     Y  + DQ  +I ++ K + S++   +LL+G  G GKT   
Sbjct: 594 EGFSFSSDDENQIEFDNDFPYVETEDQLRSIQEIKKDMESKQPMDRLLVGDVGFGKTEVA 653

Query: 185 MAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           M    +A+   +   ++ P  +LA Q Y+ FK  F   AV
Sbjct: 654 MRAAFKAVNDHKQVAILVPTTVLAQQHYTNFKERFNDFAV 693


>gi|57233929|ref|YP_181993.1| transcription-repair coupling factor [Dehalococcoides ethenogenes
           195]
 gi|57224377|gb|AAW39434.1| transcription-repair coupling factor [Dehalococcoides ethenogenes
           195]
          Length = 1148

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 85/469 (18%), Positives = 175/469 (37%), Gaps = 56/469 (11%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           +   P  DQ  +   L + +   E    +L    +G+ F++A V   ++ P +++     
Sbjct: 4   SGLLPLIDQSPSFNSLFEALDKGEADISVL---DAGRGFSLAAVYRKLKCPMLIITSQPE 60

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
            A +L  +   +               YQ               S  N  +++MR +   
Sbjct: 61  RARELLVQIAAYTGEEPGFLPDPSLLPYQ------------RAVSDRNTSLEKMRLAGIL 108

Query: 265 SLLERND---CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
               R+     IV +  + +    S E + Q  +Q+  G   E ++L+    +  Y++++
Sbjct: 109 GGFIRSQDAQIIVSAVPALLQRYVSPEIFKQSFLQVWTGLETEPQDLIRRFQQLGYRQEN 168

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           I  I GT+   G  ++IFP + ED   R+  FGN +E +  F P + +  +++  + I  
Sbjct: 169 IVEIPGTYSRRGGILDIFP-YTEDNPVRLEFFGNTLESLRVFDPQSQRSGKSLNELTISP 227

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S             +   +EL  RL  L  +    E  R    ++ D+  L+     + 
Sbjct: 228 ASELFHLG-------QLPVKELNARLEALLTDNLNPEFSR---TLSADIARLKEGLKPEY 277

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
            + ++             ++F+Y+P D+L+ +DE        S + +     ++     G
Sbjct: 278 PDFFAPLFN-------TSSIFDYLPADALVVLDEPASIEQAASHLDKEAEELRSDRLSQG 330

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-PPVE 560
             LPS     P  +  W         +SA     +L+  + +I+    R +  +      
Sbjct: 331 -ELPSV---YPRPYFSWEE-------ISA-----KLKTKKRLIMASFGRESEALKLDFAS 374

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
             +   ++  +Y+++        R+++       A  L E L E  I  
Sbjct: 375 QDNYVGRLSALYEKLGELKGHTGRVVIIS---HQAARLAELLKEHGISA 420



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 17/191 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           E +  LR     + +SATP    L         +  I  P G   P   + +A    E +
Sbjct: 747 EFFKKLRAQVDVLTLSATPIPRTLHMSLVGVRDMSIIETPPGERLPIKTVVAAFD--ERL 804

Query: 572 YDEINLAAQQGLRILLTVLTKRMA-----EDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
             E  L   +    +  V  + M      E + + + E  I +   H ++   +   ++ 
Sbjct: 805 IREAILREMERNGQVFFVNNRVMGINLLAERIQQLVPEARIGIA--HGQMAEEKLAAVMA 862

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D    + DVLV   ++  G+D+P    + I  AD+ G     T L Q  GR  R+     
Sbjct: 863 DFVRHELDVLVCTTIIESGVDVPNANTLIINRADRFGL----TQLYQLRGRVGRSSQLAY 918

Query: 687 ILYADTITKSI 697
             +     K +
Sbjct: 919 AYFLYEKDKRL 929


>gi|255023011|ref|ZP_05294997.1| transcription-repair coupling factor [Listeria monocytogenes FSL
           J1-208]
          Length = 284

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/285 (20%), Positives = 117/285 (41%), Gaps = 18/285 (6%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +LK +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLKALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   LL     IV+ 
Sbjct: 74  MDVDRLFLY-------------PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    S  +     +  G+ ++   L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
           +K +++++   L EL++     + Q L + +  DLEML +     
Sbjct: 240 VKRLEKKMTHTLNELKE---NEDKQALVENLEEDLEMLRSGVKPD 281


>gi|116493280|ref|YP_805015.1| transcription-repair coupling factor [Pediococcus pentosaceus ATCC
           25745]
 gi|116103430|gb|ABJ68573.1| transcription-repair coupling factor [Pediococcus pentosaceus ATCC
           25745]
          Length = 1165

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 89/515 (17%), Positives = 193/515 (37%), Gaps = 50/515 (9%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           ++  +    + QL+ G+    K   ++ +IE    P + +  +   A  +Y+ FK     
Sbjct: 16  VVDALQKGSR-QLVTGLLEPAKQLFLSTIIETKSAPILYVTDSLARAEHVYNMFKEE--- 71

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
                  S  D Y    + P  +    + ++ +      R     +L      I ++S S
Sbjct: 72  ------QSEIDTY----WFPAEEIIAAEVATSSPNYRTARIQFLSALATSKTGIFITSTS 121

Query: 280 CIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
            +  +    +   +  + L++G   E + L+S L    Y+R +    +G F V G  ++I
Sbjct: 122 GLRRLVPEPKDVIEARITLEVGAEYEFQTLISDLNALGYQRVEQVEKKGEFAVRGSVVDI 181

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP + +D   R+  F  +I+ +  F   T + I N+E I++   +  +     LN A+K 
Sbjct: 182 FPLNQDD-PIRMDFFDIEIDSLRTFDQATQRSIENIEKIEVLPATDLIINETKLNQAIKT 240

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           +  EL     +L +E      + L+Q I   +E  +     Q    Y++ L         
Sbjct: 241 MNNELAQAQKKLSEEN----FEALQQNINEVIERWKHHQLIQEDTMYAKQLYAAK----- 291

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
            +L +Y+ + +L+  D   + +   + +   +                  +N  L  E +
Sbjct: 292 TSLLDYLTKGTLVLDDYPRI-LDAETDIENNEASWIVDQL---------KNNVLLDNESF 341

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
                T I   + P  +     +G+   +  + T +      ++    Q+  +  E+   
Sbjct: 342 GVDIRTLIKKKSVPQLFLSMFQKGMGRLKFDQLTEITTRA--VQDFFGQMPVLKGEVERW 399

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             +   +L+   +K     +TE L++  I  + ++++             R+    V + 
Sbjct: 400 LARKQTVLIFANSKERQGKITEVLHDFEITAQKVNAD-------------RIQVAAVNII 446

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
                +G D+P   LV + + +    +  K    Q
Sbjct: 447 GQSFPQGFDMPSTKLVVLTEKELFAKVPKKRPRQQ 481



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I    ++  
Sbjct: 769 VLTLTATPIPRTLNMSMIGVRDLSVIETPPTNRYPIQTYVMEENAGAIREGIMREMRRNG 828

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  E +   +       R  Y+H ++   +  +I+ +   G++DVLV   +
Sbjct: 829 QVFYLHNRVQDIEKVVAEIEALVPEARVGYIHGQMTEKQLEDILFEFIAGEYDVLVTTTI 888

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+DIP    + + +AD  G L     L   IGR++R
Sbjct: 889 IETGIDIPNANTLFVENADHMG-LSQLYQLRGRIGRSSR 926


>gi|219850580|ref|YP_002465013.1| transcription-repair coupling factor [Chloroflexus aggregans DSM
           9485]
 gi|219544839|gb|ACL26577.1| transcription-repair coupling factor [Chloroflexus aggregans DSM
           9485]
          Length = 1182

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 102/631 (16%), Positives = 207/631 (32%), Gaps = 90/631 (14%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
             + +L   +      Q +  V  + +   +A +      P + +  +   A +   +  
Sbjct: 25  PVLTRLAAALRPG--YQTIAPVPTAARPALIAALARRWPLPVVYVTLSAESARRAVDDLC 82

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN--DC 272
            +   + V  F             P  D    +  S    +   R +  R L        
Sbjct: 83  QWLSPDRVWLF-------------PAADALPYEHMSAGSDVIARRLAVLRGLQTGQWSGV 129

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           IV    + +         +   ++L+ G  +   +LL  L+   Y+R  +    G     
Sbjct: 130 IVTPVKALMQPTMPPSELATATIRLRRGMQMPIDQLLHRLLASGYQRAAMVETPGEVSRR 189

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++++ S  +++  R+  F ++I+ +  F P T +  + +E  +I         +   
Sbjct: 190 GAILDVW-SSGDELPLRIEWFDDEIDSLRRFEPATQRSEQRLEQAEIGPPHEIPLWQ--- 245

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
                  +EE   R+  L+  G   E     +      E L      +    Y+ +    
Sbjct: 246 -------REEALRRIDALDLRGLRREVA---EEWAVAREQLAAGQRFEGRAFYAPFFF-- 293

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
                P T+ +Y+P  SL+ + E+H+     + +       +  L   G  LP       
Sbjct: 294 ---TQPATMLDYLPAGSLVTLAEAHLLEQHATEIDVQAATYRDQLVTIG-ELPPNFPRPY 349

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           LR+EE   L   T +V A       +       + ++ P   V P         Q+  + 
Sbjct: 350 LRWEELE-LLGQTKLVVA-------DLTHNEYPDALVPPLFGVPPL-----YGGQMRRLI 396

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           + I    Q G  ++        A  L E L E                   ++ ++  G+
Sbjct: 397 EAIVEQVQAGEMVVAVTA---QAARLQELLGE------------------RLMGEIASGR 435

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGF----LRSKTSLIQTIG------RAARNV 682
           F  ++    L  G  +P+  L  + D++  G       S+     T+       R+ +  
Sbjct: 436 FIAIL--GGLEAGFTVPDLRLTLLTDSEIFGIRQRRPLSERRRKTTVADRTAFLRSLKPG 493

Query: 683 NSKVILYADTI---TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           +  V+     I      I+  + E  R         +     P    ++I  V   I   
Sbjct: 494 D-YVVHIEHGIAVFDGMIRRTVGEVEREYLVLRYAGEDKIYVP---VDQIDRVTRYIGAG 549

Query: 740 DAATTNISIDAQQLSLSKKKGKAHLKSLRKQ 770
           D   T   +  Q    +K+K +A ++ L ++
Sbjct: 550 DGPPTLTRLGTQDWERTKRKVRAAVQELAEE 580



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 68/199 (34%), Gaps = 23/199 (11%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     GI    +I        P++  +  A    + +  E+     +
Sbjct: 764 VLTLTATPIPRTLHMALSGIRDLSVINTPPEDRLPIKTYVVPAD---DHLIQEVIRRELE 820

Query: 582 GLRILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               +  V  +      +AE L   + E  I V   H ++       ++ D   G++DVL
Sbjct: 821 REGQVYFVHNRVQSIYHVAERLRRLVPEARIAVG--HGQLAERNLERVMMDFFEGRYDVL 878

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  GLD+P    + I DA   G  +    L Q  GR  R                
Sbjct: 879 VCTTIIESGLDVPNANTIIIDDATHYGLAQ----LYQLRGRVGRGATRAYAYLLYNPAAP 934

Query: 697 IQLAIDETTRRR--EKQLE 713
           +        R+R    Q  
Sbjct: 935 MTS----DARQRLEAIQEA 949


>gi|222152152|ref|YP_002561312.1| transcription-repair coupling factor [Macrococcus caseolyticus
           JCSC5402]
 gi|222121281|dbj|BAH18616.1| transcription-repair coupling factor [Macrococcus caseolyticus
           JCSC5402]
          Length = 1166

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 86/524 (16%), Positives = 185/524 (35%), Gaps = 60/524 (11%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           D   AI           K  L+ G+  S K   +A+     Q+  +V+  N   A +L  
Sbjct: 17  DYNNAI---------GNKNILITGLNPSAKAMMLAESYMHHQKQMVVVTSNLYQAERLER 67

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +         V  F             P  D  IE+ S+ +  + + R      L +  +
Sbjct: 68  DLIQLVDEEDVFKF-------------PVQDIMIEEFSTKSPDLMQERIRTLTHLAKGQN 114

Query: 272 CIVVSSVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            + +  V+ +  + S  E++ +  +++ +G  V+  EL  SL+   Y++ +     G F 
Sbjct: 115 GLFLIPVNGLEKLISKKETFLRYHLEIMLGIDVDLSELQQSLIDMGYQKTERVTTLGEFS 174

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V G  I+I+P   E    R+ +F  +++ I  F   + + + N++ +++   S ++    
Sbjct: 175 VRGGLIDIYPMIGE--PVRIELFDTEVDSIRAFDIDSQRSLHNIDKVELSTASEFIFSAE 232

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
            L      + E  +    +++   R      L +        +    S   +    ++  
Sbjct: 233 DLRLMSDNLSEAFENTRTKIKTNVRDD----LRETYETVKLNMTELLSHNILRRMVKFAY 288

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
                    T+ +Y  ED+++ +DE +  I       R +     +L E G         
Sbjct: 289 HEE-----TTIADYFKEDAIIVIDEYNRVIEAKDASIRENSEFMESLIESGRGFIGQT-- 341

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++      L     V   T           +++E++ + +        ++    Q + 
Sbjct: 342 -FIKEGSLEALANKYKVAYFTL----FTASMTVVLEEVFKFSCKP-----VQQFYGQYDL 391

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           ++ E +   +    I++        E +   L + N+ V +             I + + 
Sbjct: 392 MFSEFDRYRKNDFNIVVLATNDTRKEKIKSMLTDMNLPVTF------------NIDESKP 439

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           G     +    L EGL++P   LV I + +     + K    Q 
Sbjct: 440 GIS--TIVQGDLSEGLELPYMKLVVITERELFKLRKEKPKRTQK 481



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 11/184 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+      Q   + + +     +  
Sbjct: 769 VLTLTATPIPRTLHMSLLGVRDLSVIETPPENRFPVQTYVLEYQHNFIKEAMERELSRNG 828

Query: 584 RILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++           + AE L   + +  I V   H ++   E  E +     G++D+LV  
Sbjct: 829 QVFYLYNRVATIYQKAEQLEMMMPDARIAVA--HGQMSERELEETMLGFINGEYDILVTT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 887 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSNRISYAYFLHAPNKVLTE 942

Query: 700 AIDE 703
             ++
Sbjct: 943 VAEQ 946


>gi|322412921|gb|EFY03828.1| putative transcription-repair coupling factor [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 1166

 Score =  182 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/456 (17%), Positives = 168/456 (36%), Gaps = 42/456 (9%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I     G+ S ++ QL++G++GS K   MA      Q   +VM   +    +L S+
Sbjct: 9   QNKKIQAWHSGLASLDR-QLVMGLSGSSKALAMASAFLDSQEKIVVMTSTQNEVEKLASD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +      V  F +  D      ++  +   ++K  S  E +  + +   R +L     
Sbjct: 68  LSSLLGEELVYQFFA--DDVAAAEFIFAS---MDKALSRIEALQFLINPKARGIL----- 117

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
            +VS       + + + +++  ++LK+G+  +   L   L+   Y+     I  G F   
Sbjct: 118 -IVSLSGLRTLLPNPDVFAKSHIKLKVGEDYDSDALTKQLMTIGYQNVSQVISPGEFSRR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++I+    +++ +R+  FG+DI+ I  F+P T +    +E + I+  S  +      
Sbjct: 177 GDILDIYEM-TQELPYRLEFFGDDIDGIRHFHPETQKSFEQLEELLIHPASELIFETSDF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
               +     L+  L   + + +      L           +     + I  +       
Sbjct: 236 QRGSQQ----LEKALQTAQDDKKAYLEDLLSVS--------KDGFKHKDIRKFQSLFY-- 281

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   +L +YIP+ + LF D+    + + +       +      + G  L S ++   
Sbjct: 282 ---EKEWSLLDYIPKGTPLFFDDFQKIVDKNARFDLEIANLLTEDLQQGKAL-SNLNYFA 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             + E+    P T   +   G   ++  Q   + Q             ++    Q   + 
Sbjct: 338 DNYREFRHYTPATFFSNFHKGLGNIKFDQMHQLTQYA-----------MQEFFNQFPLLI 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           DEI    +    +++ V ++   E L +   +    
Sbjct: 387 DEIKRYQKNQTTVIVQVESQHAFERLEKSFQDYQFH 422



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 82/191 (42%), Gaps = 16/191 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGG 821

Query: 584 RIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++      +  + K++AE L E + E +I   ++H ++  ++    + D   G++DVLV 
Sbjct: 822 QVFYVYNKVDTIDKKVAE-LQELVPEASI--GFVHGQMSEIQLENTLIDFINGEYDVLVA 878

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DI     + + +AD  G L +   L   +GR+ R      I YA  + +  +
Sbjct: 879 TTIIETGVDISNVNTLFVENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDK 931

Query: 699 LAIDETTRRRE 709
           +  + + +R E
Sbjct: 932 VLTEVSEKRLE 942


>gi|329666673|gb|AEB92621.1| transcription-repair coupling factor [Lactobacillus johnsonii DPC
           6026]
          Length = 1165

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/526 (17%), Positives = 186/526 (35%), Gaps = 65/526 (12%)

Query: 158 AQLLKGIHSR--EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
            +L   I     EK  LL GV        + ++++  Q+P I++  N+  A  L  E  N
Sbjct: 11  KELNNFIEKAPVEKRSLLTGVNSGAFAAVLMQMLKVWQQPLILVEDNEEKAQTLLDELGN 70

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
             P + V  F        P      T T I     ++      R      L E+   IVV
Sbjct: 71  LLPDDMVFSF--------PVDATIATQTAIASPDELS-----QRLQTLEFLAEKRAGIVV 117

Query: 276 SSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
            +   + Y +     +++     K     +  +L   L +  Y+R+ I    G F   GD
Sbjct: 118 VTPQALQYKLSDPRDFTKAKKIFKPEAEFDLDKLTEWLTQAGYRRESIVARPGEFARRGD 177

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++I+P   E+   R+  FG++++ + EF   T + +   ++I I      V        
Sbjct: 178 ILDIYPLDQEN-PIRIEFFGDEVDTVKEFDSATQRSLEEKDSISIGPALDRVFSPHNFQE 236

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A++ IK+++   + E E                  +++LE  G   +      YL  R+ 
Sbjct: 237 AVEKIKQDMSESIAEEESVKN---------HFVKAIDLLEAGGLPDNYAFLIDYLLPRS- 286

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
                 L +Y+ +D LL  D+       ++ +   +    +   + G      M N    
Sbjct: 287 ----FNLIDYLDKDGLLLFDDWQSIKKNVADVDAQNEAFISEEIKAG-----AMLNIQKL 337

Query: 515 FEEWNCLRP-----TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
              +  +         +      G         +  +QI+  T       E++   +Q+ 
Sbjct: 338 RHSFERVVQKSKQAQILFSLFQKG------MGRLKFDQILNFTTR-----EVQQFFSQMP 386

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +  E+   + +   ++L   ++  A+ + + L +  + +  + ++            L 
Sbjct: 387 LIKSELIRFSNEENTVILQADSETRAKQIAQNLVDYGVDIPVVKAD-----------QLL 435

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             K  + VG      G  +P   LV + + +           ++T+
Sbjct: 436 SNKAQITVGN--FAHGFALPSLDLVYLTERELFNQRPHHRKRVKTL 479



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V + +    ++  
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPIQTYVMEEMPSIVREAVLREMKRNG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   L E     +  Y+H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFFLHNRIDDIDKVVSQLEELIPEAKIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + + DAD  G L     L   IGR+AR
Sbjct: 885 IETGVDMPNVNTMIVEDADHYG-LSQLYQLRGRIGRSAR 922


>gi|325695766|gb|EGD37665.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK150]
          Length = 1167

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 94/525 (17%), Positives = 191/525 (36%), Gaps = 59/525 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E  ++  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKNSR-QLIMGLSASTKAITIAAGLEESEK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F+               DT I +    +++    R  A   L++    
Sbjct: 71  LISLLGEDKVYTFL-------------ADDTPIAEFVFASQEKIFSRLDALNFLIDHQKS 117

Query: 273 IVVSSVSCIYGIGSVES--YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            ++ +      +   +S  +    + L +G   +   L+  L +  YK+    + +G + 
Sbjct: 118 GILVTNVAASKLLLPDSIDFKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYS 177

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I   S  +    
Sbjct: 178 LRGDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIDNIESILIKPASDILLSEK 236

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                 + ++  L+  +              L+  +   L   +       I  +  Y  
Sbjct: 237 DYARGRENLEAILEKAVD-----------PALKSYLEELLISAKEEFHHADIRKFLSYFY 285

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
            +       T+ +Y+P  S +F D+    + + +              +    L S    
Sbjct: 286 QQE-----WTILDYLPVHSPVFFDDFQKIVDRHAQFELETASLLTDNLQNCKAL-SSQKY 339

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
              +++++   +P T   S   G   L+        Q         P  E  S   Q   
Sbjct: 340 FADKYQDYRQYKPATFFSSFQKGLGNLKFDALYQFNQY--------PMQEFFS---QFSL 388

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + +EIN   + G  I+L   +    + L + L E +I + Y+        R   I+    
Sbjct: 389 LKEEINRYKKSGYTIILQANSSAGLQSLHKNLQEYDIHLDYI--------REAEIQ---- 436

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            K  V +    L +G +  +  +V I + +       +    Q I
Sbjct: 437 -KNAVQLIEGNLVQGFNFVDEKIVLITEYEIIHKKIKRKIRRQNI 480



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 73/188 (38%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     +    + + +     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLREIDRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        Y+H ++  +     + D   G++D+LV   +
Sbjct: 826 QVYYLYNKVDTIEQKVSELRELIPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G L +   L   +GR+ R      I YA  + +  ++  
Sbjct: 886 IETGVDIPNANTLFVENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKILT 938

Query: 702 DETTRRRE 709
           + + +R E
Sbjct: 939 EVSEKRLE 946


>gi|296875514|ref|ZP_06899586.1| transcription-repair coupling factor [Streptococcus parasanguinis
           ATCC 15912]
 gi|296433438|gb|EFH19213.1| transcription-repair coupling factor [Streptococcus parasanguinis
           ATCC 15912]
          Length = 1167

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 91/533 (17%), Positives = 196/533 (36%), Gaps = 59/533 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q + +    +G+    +  L+LG++ + K   MA   +++++ A+++  +   A +L S+
Sbjct: 9   QNSNLLSWQQGLQKNNRE-LILGLSATTKAIVMASAFDSIEK-AVLITSSYNEAERLASD 66

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-ERND 271
           F        V  F+               D  + +    +++    R  A   L  E   
Sbjct: 67  FIALLGEEKVHTFLGD-------------DNPLAEFVFASQERQFARLEALNFLCQEDRQ 113

Query: 272 CIVVSSVSCIYGI-GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            I+V++VS I  +  S + ++  I QLK+G  ++   L  +L K  Y++    + +G F 
Sbjct: 114 GILVTNVSGIKLLLPSPKVFASSIFQLKVGQEIDLTTLSDTLQKIGYQKVSQVLQQGEFS 173

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++IF    +   +R+  FG++I+ I  F P + + + NVE +++ A S  +    
Sbjct: 174 LRGDILDIFEIE-QLKPYRIEFFGDEIDGIRIFDPESQRSVENVEEVQLKAVSDLLLQEE 232

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                 +            +E+       +  +  +   L  +        +  +  +  
Sbjct: 233 DFIRGQQQ-----------IEQLQEQSANEEFKSYLAEILGDISQRKLHPDLRKFISFFY 281

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
            +       TLF+Y+P+ + +F+D+      QI+     D     T   +  R  S    
Sbjct: 282 KKQ-----YTLFDYLPKHTPVFLDDYQKIADQIARFEL-DTANLLTEDLHKNRASSRQVY 335

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
                       P T   +   G   L+        Q             ++    Q + 
Sbjct: 336 FADTSTTLRKYTPATYFSNFQKGLGNLKFDHLYQFNQYP-----------MQEFFGQFDL 384

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + +EI    +    +++   +    + L + L E  IR+ Y+  +    +  +++     
Sbjct: 385 LKEEIERYRKSNYTVIVQATSHHNLQQLHKNLEEYGIRLDYIDGDTIIPQASQLV----- 439

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
                   +  L  G    +  +V I +++       +    Q I  A R  N
Sbjct: 440 --------VGGLAHGFQFVDEKIVYITESEIYQKKIKRKIRRQNISNAERLKN 484



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     T    + D +     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTFVLETNPTIIRDAVLREMDRGG 821

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +           E    +L E + E +I   ++H ++  +     + D   G++DVLV  
Sbjct: 822 QAYYLYNKVDTIEQKVSELKELIPEASI--GFVHGQMSEVRLENTLLDFINGEYDVLVTT 879

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I +AD  G L +   L   +GR+ R      I YA  + +  + 
Sbjct: 880 TIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKS 932

Query: 700 AIDETTRRRE 709
             + + +R E
Sbjct: 933 LTEVSEKRLE 942



 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMA 186
           ++ +   ++   F+    Y  + DQ  +I ++ K + S     +LL+G  G GKT   M 
Sbjct: 592 FAYSKDDENQEAFEQDFPYIETDDQLRSIEEIKKDMESNRPMDRLLVGDVGFGKTEVAMR 651

Query: 187 KVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
              +A+   +   V+ P  +LA Q Y+ FK  F   AVE
Sbjct: 652 AAFKAVNDHKQVAVLVPTTVLAQQHYANFKERFESFAVE 690


>gi|118578938|ref|YP_900188.1| transcription-repair coupling factor [Pelobacter propionicus DSM
           2379]
 gi|118501648|gb|ABK98130.1| transcription-repair coupling factor [Pelobacter propionicus DSM
           2379]
          Length = 1177

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 112/521 (21%), Positives = 178/521 (34%), Gaps = 50/521 (9%)

Query: 152 DQPAAI---AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           D P+ I   A +L  +    +  LL G+ GS     +A ++    R  +V+ P++  A +
Sbjct: 5   DTPSRISHTATILDALERGSRHILLPGLKGSSPACILADILARSTRTLLVLTPDQAAADE 64

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
              E   F   +                  P  D      +S +  I   R      L  
Sbjct: 65  FLRELTFFASPSHAPLSF------------PAWDMAPFSATSPHPDISGARLDTLFRLQN 112

Query: 269 RNDCIVVSSVSC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
                VV  V+  +  +     +S+    L  G+  E+ ELL  LVK  Y    +   RG
Sbjct: 113 GLARAVVMPVAAALQRVLGRGLFSESSCYLVSGEEFERDELLGRLVKMGYANVPLVEDRG 172

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
           TF V G  ++IFP +L     R+  FG+  E I  F PLT + +  +E + +  +   + 
Sbjct: 173 TFAVRGGILDIFPPNLS-APVRIEFFGDTAETIRTFDPLTQRSLHPLEELVLLPSREIIL 231

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
                   +  I   LK    +LE             R    LE L++    + +E    
Sbjct: 232 TDG----VLADIAPRLKGCCDDLEIPAN---------RRREILENLKSAVYFRGVEYLQP 278

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
            L    PG    T+F+Y P D+ L + +       I+   R     +AT  + G  LP  
Sbjct: 279 LLH---PGLE--TIFDYAP-DASLALLDPQAIQEAITTFGRELEDGEATARQNG--LP-- 328

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
              R   + +   LR           S  L +         I      D  V +    TQ
Sbjct: 329 HSPRQELYLDGEQLRELMENRGRLELSGLLLEEPQGPAVITIPCQDNTDLRVTVSKETTQ 388

Query: 568 -VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            +  +   +      G R+L+       AE L E L    I        +      E ++
Sbjct: 389 ALTPLSRSLRQWLDSGFRVLIACHQNAQAERLRELLTPYRIPCA-----ISEASFAETVQ 443

Query: 627 DLRLG----KFDVLVGINLLREGLDIPECGLVAILDADKEG 663
               G       V +    L  G  + E  LV I + +  G
Sbjct: 444 GEAQGDASPDGVVTLLQGDLSRGFRLLEARLVLIAEEELFG 484



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 94/258 (36%), Gaps = 37/258 (14%)

Query: 525  TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             + ++ATP    L     GI    II    +    V+   AR   E V + I    ++G 
Sbjct: 781  VMTLTATPIPRTLYMSMMGIRDLSIIDTPPVDRLAVKTIVARFSEELVREAIMRELRRGG 840

Query: 584  RIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++      +  + KR AE +   + E  I V   H ++   E  +++     G+ ++L+ 
Sbjct: 841  QVFFVHNRVQTIAKR-AELIAALVPEAKIAVG--HGQMGEQELEKVMLGFMHGETNLLIC 897

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  GLDIP    + +  AD+ G  +    L Q  GR  R+              S+ 
Sbjct: 898  TTIIESGLDIPNANTLIVDHADRFGLSQ----LYQLRGRVGRSSQRGYAYLLIPGEGSL- 952

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                 T+  RE+                + + ++ +       AT ++ I      L  +
Sbjct: 953  -----TSDARER---------------LKILQDISELGAGFRIATHDMEIRGAGDMLGSR 992

Query: 759  KGKAHLK---SLRKQMHL 773
            +    ++    L  QM  
Sbjct: 993  QSGTVIEIGFELYNQMLE 1010


>gi|170017776|ref|YP_001728695.1| transcription-repair coupling factor [Leuconostoc citreum KM20]
 gi|169804633|gb|ACA83251.1| Transcription-repair coupling factor [Leuconostoc citreum KM20]
          Length = 1178

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 94/612 (15%), Positives = 202/612 (33%), Gaps = 73/612 (11%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QLLLGV GS +  ++A + ++  R  +V+   +  A Q+ ++     P            
Sbjct: 28  QLLLGVNGSARAASIAALYQSNPRQMLVITDTQAHADQMLADLSGLTPE----------- 76

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVES 289
                   P  ++   + +  + ++   R      L  +  CIVV+S++     +    +
Sbjct: 77  ----AISFPAEESLATEMAISSPELRLQRVLTLLRLRTQQPCIVVTSLAGAERFLPEPST 132

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
             Q  + L +    +  ++ ++L+   Y    +    G F   G  ++I+P   ED   R
Sbjct: 133 LDQASLSLTVQARYDIHQIKNTLMMMGYIPTKLVQGPGEFAQRGAIVDIYPL-TEDNPIR 191

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           +  F +++++I  F   T + I  +E   I   +  +        A + I+ +       
Sbjct: 192 LDFFDDELDQIKIFDVETQKSIAVLEATTIQPATDLIVSETRYEQAKQIIEAQFNTYRTT 251

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
           L    +    + + +        L        +  Y+ +  G+        L +Y    +
Sbjct: 252 LSGIDK----KHITEGFAATQYRLSNHTRDNQLLPYALHFFGKE-----TNLLDYFDGQA 302

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           L+ +DE              D    +   E    LP    ++ LR +         +   
Sbjct: 303 LVVIDEYTRLKETRLQQLTRDQEWLSHQLETYQILP----HQSLRADF-----DHIVSSM 353

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQVEDVYDEINLAAQQGLRIL 586
           A P  +            + +        V  R A     Q+  + +++  A + G  ++
Sbjct: 354 AQPFIY-----LANFQRGLNKIHFTNIVEVTTRPATQYYGQLPAIKNDLVYAQESGTTVV 408

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           + +   +  +   + L +  +    +H     L     + D              L  G 
Sbjct: 409 MLISEPQRRQHFGQSLQDLTVP---LHESNHLLVNEVQLAD------------GNLSAGF 453

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-------NVNSKVILYADTITKSIQL 699
           + P+  L  + + +     R      + I  A R       NV   V+     I +    
Sbjct: 454 EWPKLHLTVLTEHELFTQSRRPAPRQRKIANAERLKSYNELNVGDYVVHINHGIGR--YE 511

Query: 700 AIDETTRRREKQ----LEHNKKHNI-NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
            +   T    KQ    + + K   I  P +    I + I       A   N  +   + +
Sbjct: 512 GLQTITVDGGKQDYLSIAYQKNAKIFIPVTQLNLIQKYIGASDAAKAPKLN-KLGGAEWA 570

Query: 755 LSKKKGKAHLKS 766
            +K++  A ++ 
Sbjct: 571 KTKRQVAAKIED 582



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G     +I        P++          V + I     +  
Sbjct: 771 VLTLTATPIPRTLNMAMVGARDLSVIETPPANRYPIQTYVLEADWTIVRNAIEKELARDG 830

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   + +     R   +H ++   +   ++ D   G +DVLV   +
Sbjct: 831 QVFYLHNRVADLDRVASQIEDLVPSARVASIHGQMSETQLESVLYDFLNGNYDVLVTTTI 890

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G  +    L Q  GR  R+       +    T++     
Sbjct: 891 IETGVDIPNANTLIVENADHMGLSQ----LYQLRGRVGRSTRLAYAYFTYPFTRTPS--- 943

Query: 702 DETTRRRE 709
           +E  +R E
Sbjct: 944 EEAEKRLE 951


>gi|327463840|gb|EGF10156.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK1057]
          Length = 1167

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 93/532 (17%), Positives = 189/532 (35%), Gaps = 73/532 (13%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E   +  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND- 271
             +    + V  F+               DT I +    +++    R  A   L++    
Sbjct: 71  LISLLGEDKVYTFL-------------ADDTPIAEFVFASQEKIFSRLDALNFLIDHQKS 117

Query: 272 -CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             +V +  +    +     +    + L +G   +   L+  L +  YK+    + +G + 
Sbjct: 118 GILVTNVAASKLLLPDPIDFKYTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYS 177

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++IF     D  +R+  FG++I+ I  F P     I N+E+I I   S  +    
Sbjct: 178 LRGDILDIFERSA-DSPYRLEFFGDEIDGIRIFNPENQTSIENIESILIKPASDILLSEK 236

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                 + ++  L+  +              L+  +   L   +       I  +  Y  
Sbjct: 237 DYARGRENLEAILEKAVD-----------PALKSYLEELLISAKEEFHHADIRKFLSYFY 285

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG-------DFHRKATLAEYGFR 503
            +       T+ +Y+P  S +F D+    + + +            D      L      
Sbjct: 286 QKE-----WTILDYLPVHSPVFFDDFQKIVDRHAQFELETANLLTDDLQECKAL------ 334

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
             S       +++++   +P T   S   G   L+        Q         P  E  S
Sbjct: 335 --SSQKYFADKYQDYRQYKPATFFSSFQKGLGNLKFDALYQFNQY--------PMQEFFS 384

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q   + +EIN   + G  I+L   +    + L + L E +I + Y+           
Sbjct: 385 ---QFPLLKEEINRYKKSGYTIILQANSSAGLQSLHKNLQEYDIHLDYI----------- 430

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             ++  + K  V +    L +G +  +  +V I + +       +    Q I
Sbjct: 431 --KEAEIHKNAVQLIEGNLVQGFNFVDEKIVLITEYEIIHKKIKRKIRRQNI 480



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 73/188 (38%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     +    + + +     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLREIDRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        Y+H ++  +     + D   G++D+LV   +
Sbjct: 826 QVYYLYNKVDTIEQKVSELRELIPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G L +   L   +GR+ R      I YA  + +  ++  
Sbjct: 886 IETGVDIPNSNTLFVENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKILT 938

Query: 702 DETTRRRE 709
           + + +R E
Sbjct: 939 EVSEKRLE 946


>gi|262281636|ref|ZP_06059405.1| transcription-repair coupling factor [Streptococcus sp. 2_1_36FAA]
 gi|262262090|gb|EEY80787.1| transcription-repair coupling factor [Streptococcus sp. 2_1_36FAA]
          Length = 1167

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 95/528 (17%), Positives = 200/528 (37%), Gaps = 65/528 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I    K ++ + + QLL+G++GS K   +A  ++  Q+  +VM      A +L S+
Sbjct: 13  QNQQILDWKKNLNQKTR-QLLMGLSGSTKALAIASALDEHQK-ILVMTSGYSEAEKLSSD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND- 271
             +      V  F++  D      ++  +   I             R  A   LL+ N+ 
Sbjct: 71  LISLLGEEKVYNFLA--DDAPMAEFIFSSQEKIYT-----------RIGALNFLLDDNES 117

Query: 272 -CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             +V +  +    + +       I++LK+G       L++ L+K  Y+++     +G F 
Sbjct: 118 GILVTNLSASRLFLPNPNELKSSIIELKVGQEYNLDTLVNFLIKIGYRKESQVFNQGEFS 177

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++IF        +R+  FG++I+ I  F   +   I N+  + I+  +  +    
Sbjct: 178 LRGDILDIFDKDSIS-PYRLEFFGDEIDGIRIFDSESQTSIENLNQVLIHPANDILLSDE 236

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
               A K I+E             +  +   L+  +   L+ ++          +  Y  
Sbjct: 237 DYLRAQKKIEE-----------AVKASQDNHLKSYLEEILQDVKKRQLHPDSRKFLSYFY 285

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
                E   T+ +Y+P+ + +F D+    + + +          AT+   G +    + N
Sbjct: 286 -----EKEWTILDYLPKHTPIFFDDFQKIMERNAQFEME----AATILTEGLQSSKAVSN 336

Query: 511 RPLR---FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +      + ++   +P+T + +   G   L+        Q         P  E  S   Q
Sbjct: 337 QKYFVNAYPDFRNYKPSTFLSNFHKGLGNLKFDFLYQFNQY--------PMQEFFS---Q 385

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
              + DEI+   + G  ++L   +    + L + L E +I+V Y++ +      +++I+ 
Sbjct: 386 FLLLKDEIDRYKKAGSTVILQASSLSSLQSLHKTLQEYDIQVEYINDKEIHKNSVQLIQ- 444

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
                         L +G +  +  LV I + +       +    Q I
Sbjct: 445 ------------GNLNQGFNFVDQKLVLITEYEIFQKKVKRRVRRQNI 480



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 71/183 (38%), Gaps = 11/183 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     +    + D I     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTIIRDAILREIDRGG 825

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E    +L E + E NI   Y+H ++  +     + D   G++DVLV  
Sbjct: 826 QVYYLYNKVDTIEQKVAELKELIPEANI--GYVHGQMSEIRLENTLIDFINGEYDVLVTT 883

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I +AD  G     ++L Q  GR  R+       +     K++  
Sbjct: 884 TIIETGVDIPNANTLFIENADHMGL----STLYQLRGRVGRSNRIAYAYFMYRPDKNLTE 939

Query: 700 AID 702
             +
Sbjct: 940 VAE 942



 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 4/100 (4%)

Query: 127 RSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FT 184
             +S ++  ++   F     Y  + DQ  +I ++ K + S++   +LL+G  G GKT   
Sbjct: 594 EGFSFSSDDENQIEFDNDFPYVETEDQLRSIQEIKKDMESKQPMDRLLVGDVGFGKTEVA 653

Query: 185 MAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           M    +A+   +   ++ P  +LA Q Y+ FK  F   AV
Sbjct: 654 MRAAFKAVNDHKQVAILVPTTVLAQQHYTNFKERFNDFAV 693


>gi|125716894|ref|YP_001034027.1| transcription-repair coupling factor [Streptococcus sanguinis SK36]
 gi|125496811|gb|ABN43477.1| Transcription-repair coupling factor, putative [Streptococcus
           sanguinis SK36]
          Length = 1167

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 93/532 (17%), Positives = 189/532 (35%), Gaps = 73/532 (13%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E   +  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND- 271
             +    + V  F+               DT I +    +++    R  A   L++    
Sbjct: 71  LISLLGEDKVYTFL-------------ADDTPIAEFVFASQEKIFSRLDALNFLIDHQKS 117

Query: 272 -CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             +V +  +    +     +    + L +G   +   L+  L +  YK+    + +G + 
Sbjct: 118 GILVTNVAASKLLLPDPIDFKTTNINLIVGQEYDLNNLVKMLSRTGYKKVSQVLSQGEYS 177

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I   S  +    
Sbjct: 178 LRGDILDIFERSAE-FPYRLEFFGDEIDGIRIFNPENQTSIENIESILIKPASDILLSEK 236

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                 + ++  L+  +              L+  +   L   +       I  +  Y  
Sbjct: 237 DYARGRENLEAILEKAVD-----------PALKSYLEELLISAKEEFHHADIRKFLSYFY 285

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG-------DFHRKATLAEYGFR 503
            +       T+ +Y+P  S +F D+    + + +            D      L      
Sbjct: 286 QKE-----WTILDYLPVHSPVFFDDFQKIVDRHAQFELETAGLLTDDLQNCKAL------ 334

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
             S       +++++   +P T   S   G   L+        Q         P  E  S
Sbjct: 335 --SSQKYFADKYQDYRQYKPATFFSSFQKGLGNLKFDALYQFNQY--------PMQEFFS 384

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q   + +EIN   + G  I+L   +    + L + L E +I + Y+           
Sbjct: 385 ---QFPLLKEEINRYKKSGYTIILQANSSAGLQSLHKNLQEYDIHLDYI----------- 430

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             ++  + K  V +    L +G +  +  +V I + +       +    Q I
Sbjct: 431 --KEAEIHKNAVQLIEGNLVQGFNFVDEKIVLITEYEIIHKKIKRKIRRQNI 480



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 73/188 (38%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     +    + + +     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLREIDRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        Y+H ++  +     + D   G++D+LV   +
Sbjct: 826 QVYYLYNKVDTIEQKVSELRELIPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G L +   L   +GR+ R      I YA  + +  ++  
Sbjct: 886 IETGVDIPNANTLFVENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKILT 938

Query: 702 DETTRRRE 709
           + + +R E
Sbjct: 939 EVSEKRLE 946


>gi|161506855|ref|YP_001576809.1| transcriptional repair coupling factor [Lactobacillus helveticus
           DPC 4571]
 gi|160347844|gb|ABX26518.1| transcriptional repair coupling factor [Lactobacillus helveticus
           DPC 4571]
          Length = 1165

 Score =  181 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 86/508 (16%), Positives = 189/508 (37%), Gaps = 53/508 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + +++  ++ P I++  N+  A  LY E     P  +V+ F   
Sbjct: 24  KNSLITGANAGAFSLLLKQIVTELKTPLILVEENENKAQNLYGELSAILPDGSVQIF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                P      T T +     ++ +I+     A   LL +   IVV++   + Y +   
Sbjct: 81  -----PVDATIATQTAVSSPDELSNRIE-----ALNFLLSKKSGIVVTTPQGLQYKLSDP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           + ++Q     + G   E  +L   LV   YK++ +    G F + GD ++++P   E+  
Sbjct: 131 QEFAQAKKDFEPGKEYELTDLNKWLVSLGYKKEALVARPGEFAIRGDILDVYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ I EF   T +    ++ ++I A    V     + TA + I++++    
Sbjct: 190 VRIEFFGDEIDTIKEFDLATQRSQEEIDHVEISAAQDRVFSVEAIKTAAEAIEQDM---- 245

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                       + ++   T  L+ L   G   +      YL  +     P +L EY+ +
Sbjct: 246 -----GDAPAPDKAVKDHFTIALDALNAGGLPDNYAFLVDYLIKK-----PSSLLEYLDK 295

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           +  + +D+  +    +  + + +    +   + G  LP     R    +     +   I 
Sbjct: 296 NGQILIDDLPLVKQAVETVDKQNTAFISDELKTGAMLPKQTL-RNDFDQVLTKDKHYRIY 354

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
            S    S    +   +   Q   P               Q+  +  E+    + G  ++L
Sbjct: 355 FSLFQRSMGRIRLGQMFNWQTREPAQFFS----------QMPLIKSELESYQKSGQTVVL 404

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
                + A+ + + + +  + +  +  +           ++  GK  ++V       G  
Sbjct: 405 QADNAKRAKQIDQTMVDFGLNLPIVGED-----------EITEGKSQIVVAG--YTSGFS 451

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTI 675
           +P   LV + + +       +   I+T+
Sbjct: 452 LPSVKLVYLTERELFNKRPQRKKRIKTL 479



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      + +  +  T   +          Q+  V  D      Q+  
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPIQTYVMEQIPSVVRDACLREMQRDG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          ++  E L +     R    H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFYLHNRISDIDETVEKLQQLIPNARIASAHGRMSQNQLEDILYRFLNREFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 885 IETGIDMPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 922


>gi|323465804|gb|ADX69491.1| Transcriptional repair coupling factor [Lactobacillus helveticus
           H10]
          Length = 1165

 Score =  181 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 86/508 (16%), Positives = 190/508 (37%), Gaps = 53/508 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + +++  ++ P I++  N+  A  LY E     P  +V+ F   
Sbjct: 24  KNSLITGANAGAFSLLLKQIVTELKTPLILVEENENKAQNLYGELSAILPDGSVQIF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                P      T T +     ++ +I+     A   LL +   IVV++   + Y +   
Sbjct: 81  -----PVDATIATQTAVSSPDELSNRIE-----ALNFLLSKKSGIVVTTPQGLQYKLSDP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           + ++Q     + G   E  +L   LV   YK++ +    G F + GD ++++P   E+  
Sbjct: 131 QEFAQAKKDFEPGKEYELTDLNKWLVSLGYKKEALVARPGEFAIRGDILDVYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ I EF   T +  + ++ ++I A    V     + TA + I++++    
Sbjct: 190 VRIEFFGDEIDTIKEFDLATQRSQKEIDHVEISAAQDRVFSVEAIKTAAEAIEQDM---- 245

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                       + ++   T  L+ L   G   +      YL  +     P +L EY+ +
Sbjct: 246 -----GDAPAPDKAVKDHFTIALDALNAGGLPDNYAFLVDYLIKK-----PSSLLEYLDK 295

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           +  + +D+  +    +  + + +    +   + G  LP     R    +     +   I 
Sbjct: 296 NGQILIDDLPLVKQAVETVDKQNTAFISDELKTGAMLPKQTL-RNDFDQVLTKDKHYRIY 354

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
            S    S    +   +   Q   P               Q+  +  E+    + G  ++L
Sbjct: 355 FSLFQRSMGRIRLGQMFNWQTREPAQFFS----------QMPLIKSELESYQKSGQTVVL 404

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
                + A+ + + + +  + +  +  +           ++  GK  ++V       G  
Sbjct: 405 QADNAKRAKQIDQTMVDFGLNLPIVGED-----------EITEGKSQIVVAG--YTSGFS 451

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTI 675
           +P   LV + + +       +   I+T+
Sbjct: 452 LPSVKLVYLTERELFNKRPQRKKRIKTL 479



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      + +  +  T   +          Q+  V  D      Q+  
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPIQTYVMEQIPSVVRDACLREMQRDG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          ++  E L +     R    H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFYLHNRISDIDETVEKLQQLIPNARIASAHGRMSQNQLEDILYRFLNREFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 885 IETGIDMPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 922


>gi|306834606|ref|ZP_07467718.1| transcription-repair coupling factor [Streptococcus bovis ATCC
           700338]
 gi|304423242|gb|EFM26396.1| transcription-repair coupling factor [Streptococcus bovis ATCC
           700338]
          Length = 1169

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 79/509 (15%), Positives = 186/509 (36%), Gaps = 56/509 (11%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +    QL++G++GS +   +A   +A +   +V+   +    +L S+  +    + V  F
Sbjct: 25  ANLGRQLIMGLSGSSRALAIASAYQANEEKIVVITSTQNEVEKLASDLSSLIGEDKVYTF 84

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
            +          V   +         + +++ +         +++  ++ S V     + 
Sbjct: 85  FADD--------VAAAEFIFASMDKAHSRLEVLNFLQDN---KQSGILITSLVGARVLLP 133

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           + E Y++  +   +G+     +++  L    Y++       G F   GD ++I+     D
Sbjct: 134 NPEIYAESQLNFVVGEDYNIDKVVKVLSNVGYQKVSQVRNPGEFSRRGDIVDIYEM-TAD 192

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
             +R+  FG++++ I +F   T + + N+E + I      +        A K  +  L+ 
Sbjct: 193 YPYRLEFFGDEVDGIRQFDAETQKSLSNIEQVTISPADELILSEEDFARASKAFETFLET 252

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
              E +                Y  E+   T      ++  R+L+     E   TL +YI
Sbjct: 253 AKDEQQA---------------YLSELYAATQEQYKHQDIRRFLSLFYAKE--WTLLDYI 295

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
           P+ + +F D+    + + +       +      + G  + S +      +++    +P T
Sbjct: 296 PKGTPVFFDDFQKLVDRNAKFDLEVANLLTEDLQRGKAVSSLV-YFADIYKDLRQYQPAT 354

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
              +   G   L+  +     Q             ++    Q   + DE+N   +    +
Sbjct: 355 FFSNFHKGLGNLKFDKLHNFTQYP-----------MQEFFNQFPLLIDEVNRYQKSKATV 403

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+   ++   E L E L+E  + +  + ++           DL+  +  ++VG   L  G
Sbjct: 404 LIQADSEHGLERLQENLHEYGLELPVVATD-----------DLQAQQAQLVVGN--LSNG 450

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQT 674
               +  +V I   + E + +     I+ 
Sbjct: 451 FYFADEKIVLI--TEHEIYHKKIKRRIRR 477



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     T    + + I     +G 
Sbjct: 766 VLTLTATPIPRTLHISMLGIRDLSVIETPPTNRYPVQTYVLETNPGLIREAIIREIDRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +     L E        ++H ++  ++    + D   G +DVLV   +
Sbjct: 826 QVFYVYNRVDTIDQKVSELQELVPEASIGFVHGQMSEIQLENTLMDFIDGVYDVLVATTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+DI     + I +AD  G L +   L   +GR+ R   + ++ + D I
Sbjct: 886 IETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNRIAYAYLMYHPDKI 936


>gi|324989584|gb|EGC21530.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK353]
          Length = 1167

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 93/532 (17%), Positives = 189/532 (35%), Gaps = 73/532 (13%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E   +  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND- 271
             +    + V  F+               DT I +    +++    R  A   L++    
Sbjct: 71  LISLLGEDKVYTFL-------------ADDTPIAEFVFASQEKIFSRLDALNFLIDHQKS 117

Query: 272 -CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             +V +  +    +     +    + L +G   +   L+  L +  YK+    + +G + 
Sbjct: 118 GILVTNVAASKLLLPDPIDFKTTNINLIVGQEYDLNNLVKMLSRTGYKKVSQVLSQGEYS 177

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I   S  +    
Sbjct: 178 LRGDILDIFERSAE-FPYRLEFFGDEIDGIRIFNPENQTSIENIESILIKPASDILLSEK 236

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                 + ++  L+  +              L+  +   L   +       I  +  Y  
Sbjct: 237 DYARGRENLEAILEKAVD-----------PALKSYLEELLISAKEEFHHADIRKFLSYFY 285

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG-------DFHRKATLAEYGFR 503
            +       T+ +Y+P  S +F D+    + + +            D      L      
Sbjct: 286 QKE-----WTILDYLPVHSPVFFDDFQKNVDRHAQFELETAGLLTDDLQNCKAL------ 334

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
             S       +++++   +P T   S   G   L+        Q         P  E  S
Sbjct: 335 --SSQKYFADKYQDYRQYKPATFFSSFQKGLGNLKFDALYQFNQY--------PMQEFFS 384

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q   + +EIN   + G  I+L   +    + L + L E +I + Y+           
Sbjct: 385 ---QFPLLKEEINRYKKSGYTIILQANSSAGLQSLHKNLQEYDIHLDYI----------- 430

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             ++  + K  V +    L +G +  +  +V I + +       +    Q I
Sbjct: 431 --KEAEIHKNAVQLIEGNLVQGFNFVDEKIVLITEYEIIHKKIKRKIRRQNI 480



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 73/188 (38%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     +    + + +     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLREIDRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        Y+H ++  +     + D   G++D+LV   +
Sbjct: 826 QVYYLYNKVDTIEQKVSELRELIPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G L +   L   +GR+ R      I YA  + +  ++  
Sbjct: 886 IETGVDIPNANTLFVENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKILT 938

Query: 702 DETTRRRE 709
           + + +R E
Sbjct: 939 EVSEKRLE 946


>gi|323340106|ref|ZP_08080371.1| transcription-repair coupling factor [Lactobacillus ruminis ATCC
           25644]
 gi|323092483|gb|EFZ35090.1| transcription-repair coupling factor [Lactobacillus ruminis ATCC
           25644]
          Length = 1179

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 85/525 (16%), Positives = 195/525 (37%), Gaps = 74/525 (14%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
             +   ++ GV+GS +T  +A + E  Q P IV+  +   A  L  +  N F    ++ F
Sbjct: 21  KEKGRHMITGVSGSVRTLLLADLEEKFQVPLIVVCDDLFHAQSLEEDLTNVFAEEDIDLF 80

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
                        P  + +    S+ + +    R    + + + +  IVV+SVS I  + 
Sbjct: 81  -------------PVEENFAAAISASSPEYKAQRVKTLQKMADGSSKIVVTSVSGIRRML 127

Query: 286 SVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
             + +  +  ++ K+G+ +  ++L   L    Y+   +    G F V G   +I+  +LE
Sbjct: 128 CPKDFWLKSTIKFKLGEEIIPEKLKQELCTMGYRAVKMVERPGDFAVRGSIFDIYALNLE 187

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           +   R+ +F  +I+ +  F     + ++ ++ ++I   + ++     L      +++ +K
Sbjct: 188 N-PVRIDLFDTEIDSLRLFDSADQRSLKKIDEVEILPATDFIASDSMLEKGAAVLQKNVK 246

Query: 405 MRLIEL--EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
             L +L  E++ +LL          +   +LE      S E Y         G+   +LF
Sbjct: 247 DYLAKLDDEEDKKLLADNLRTVADDWHRGILEPEHVVFSEELY---------GKSKTSLF 297

Query: 463 EYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLR 522
           +Y+ E  ++  D+      +   + + D                              + 
Sbjct: 298 DYLSESGMIVFDDYKRLKEKDHELEKSDAQW-----------------------ILEKIE 334

Query: 523 PTTIVVSATPGS-----WELEQCQGIIVEQIIRPTGLVDPP----VEIRSAR---TQVED 570
              + V  T G       + EQ + I +  + +  G +       ++ RS +    Q+  
Sbjct: 335 DRKLYVKETLGFKISELEKKEQHERIFMSLLQKGMGRMRFVSLTDIKSRSVQQFFGQLPL 394

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  E     +    ++  +     A+ + + L +  I+                   +  
Sbjct: 395 LKVETLRYKKTNETVVFLISETERAKKMLQLLDDFGIKAI-----------ETNKDKIEQ 443

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           G F ++     L++G ++P   LV + + +    ++ +    QT+
Sbjct: 444 GAFQIV--NGTLQKGFELPLSHLVVLTENELFAKVKKRQPRHQTM 486



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 68/174 (39%), Gaps = 7/174 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I    L   P++  +     + V   I     +G 
Sbjct: 772 VLTLTATPIPRTLNMSMLGVRDLSVIETAPLNRYPIQTYAMEQNYDVVAAGIRREMSRGG 831

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E + E L       R  Y+H ++   +  +I+ D   G++DVLV   +
Sbjct: 832 QVFYLHNRVHDIETVVETLNTIVPEARIAYVHGQMSETQMEKILADFIAGEYDVLVTTTI 891

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +     K
Sbjct: 892 IETGVDIPNVNTLFVEDADRMGLAQ----LYQLRGRVGRSNRVAYAYFMYQPDK 941


>gi|323350835|ref|ZP_08086494.1| transcription-repair coupling factor [Streptococcus sanguinis
           VMC66]
 gi|322123009|gb|EFX94712.1| transcription-repair coupling factor [Streptococcus sanguinis
           VMC66]
          Length = 1167

 Score =  180 bits (457), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 93/532 (17%), Positives = 189/532 (35%), Gaps = 73/532 (13%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E   +  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND- 271
             +    + V  F+               DT I +    +++    R  A   L++    
Sbjct: 71  LISLLGEDKVYTFL-------------ADDTPIAEFVFASQEKIFSRLDALNFLIDHQKS 117

Query: 272 -CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             +V +  +    +     +    + L +G   +   L+  L +  YK+    + +G + 
Sbjct: 118 GILVTNVAASKLLLPDPIDFKTTNINLIVGQEYDLNNLVKMLSRTGYKKVSQVLSQGEYS 177

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I   S  +    
Sbjct: 178 LRGDILDIFERSAE-FPYRLEFFGDEIDGIRIFNPENQTSIENIESILIKPASDILLSEK 236

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                 + ++  L+  +              L+  +   L   +       I  +  Y  
Sbjct: 237 DYARGRENLEAILEKAVD-----------PALKSYLEELLISAKEEFHHADIRKFLSYFY 285

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG-------DFHRKATLAEYGFR 503
            +       T+ +Y+P  S +F D+    + + +            D      L      
Sbjct: 286 QKE-----WTILDYLPVHSPVFFDDFQKNVDRHAQFELETAGLLTDDLQNCKAL------ 334

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
             S       +++++   +P T   S   G   L+        Q         P  E  S
Sbjct: 335 --SSQKYFADKYQDYRQYKPATFFSSFQKGLGNLKFDALYQFNQY--------PMQEFFS 384

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q   + +EIN   + G  I+L   +    + L + L E +I + Y+           
Sbjct: 385 ---QFPLLKEEINRYKKSGYTIILQANSSAGLQSLHKNLQEYDIHLDYI----------- 430

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             ++  + K  V +    L +G +  +  +V I + +       +    Q I
Sbjct: 431 --KEAEIHKNAVQLIEGNLVQGFNFVDEKIVLITEYEIIHKKIKRKIRRQNI 480



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 73/188 (38%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     +    + + +     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLREIDRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        Y+H ++  +     + D   G++D+LV   +
Sbjct: 826 QVYYLYNKVDTIEQKVSELRELIPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G L +   L   +GR+ R      I YA  + +  ++  
Sbjct: 886 IETGVDIPNANTLFVENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKILT 938

Query: 702 DETTRRRE 709
           + + +R E
Sbjct: 939 EVSEKRLE 946


>gi|55820109|ref|YP_138551.1| transcription repair coupling factor [Streptococcus thermophilus
           LMG 18311]
 gi|55736094|gb|AAV59736.1| transcription repair coupling factor [Streptococcus thermophilus
           LMG 18311]
          Length = 1168

 Score =  180 bits (457), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 156/440 (35%), Gaps = 45/440 (10%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G +GS K   MA  +        ++   +  A QL  +       + V  F     
Sbjct: 28  QLVMGFSGSSKAVAMASALSNQVPKIFIVTSTQNEAEQLVGDLSAILGEDKVYSFF---- 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVE 288
                      D    +    + +    R  +   L++      +V S V     + +  
Sbjct: 84  ---------ADDVSAAEFIFASPEKTHSRLESLNFLMDEEASGVLVTSLVGTKLHLPNPR 134

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            Y    + L +G   +   L   L    Y+R +  +  G F   GD ++I+    E + +
Sbjct: 135 VYKDSRIDLVLGKEYDLDALSRHLTHIGYQRVEQVLSPGEFSRRGDILDIYELTAE-LPY 193

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FG++I+ I +F   + + + N++ + I      +  R     A    ++ L+  + 
Sbjct: 194 RLEFFGDEIDGIRQFDSDSQKSLNNLDHVVISPADDIILTREDYQRA----EKALESAVS 249

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
             +   +            Y  E+L  T      ++  ++L+     +   TLF+Y+P+ 
Sbjct: 250 RADGLHK-----------AYLEEVLSVTSDGHRHKDLRKFLSLFY--DKAYTLFDYLPKG 296

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           + +F+D+    + +   +     +        G  L S ++     F+     +P +   
Sbjct: 297 TPVFIDDFQKIVDRHGRLELEVANLLTEDLHQGKSL-SHLNYFVDSFKTLRNYQPASFFS 355

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           +   G   L+  +     Q             ++    Q   + DEI    +    ++L 
Sbjct: 356 NFHNGLGNLKFDKLYQFTQYP-----------MQEFFNQFPLLIDEIRRYTKNKATVILQ 404

Query: 589 VLTKRMAEDLTEYLYERNIR 608
           V + +    L E L E N+ 
Sbjct: 405 VGSDKQLNSLKETLEEYNLD 424



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    II        PV+     T    + + I     +G 
Sbjct: 764 VLTLTATPIPRTLHMSMLGIRDLSIIETAPTNRYPVQTYVMETNPGLIREAILREMDRGG 823

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          +     L+E     R  ++H ++  +     +     G +D+LV   +
Sbjct: 824 QIFYIYNRVETIDQKVSELHELVPEARIGFVHGQMSEVMLENTLLYFLNGDYDILVATTI 883

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+DIP    + I +AD  G L +   L   +GR+ R   + ++ + D +
Sbjct: 884 IETGIDIPNVNTLLIENADHMG-LSTLYQLRGRVGRSNRIAYAYLMYHPDKV 934


>gi|328945180|gb|EGG39335.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK1087]
          Length = 1167

 Score =  180 bits (457), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 94/532 (17%), Positives = 191/532 (35%), Gaps = 73/532 (13%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E   +  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND- 271
             +    + V  F+               DT I +    +++    R  A   L++    
Sbjct: 71  LISLLGEDKVYTFL-------------ADDTPIAEFVFASQEKIFSRLDALNFLIDHQKS 117

Query: 272 -CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             +V +  +    +     +    + L +G   +   L+  L +  YK+    + +G + 
Sbjct: 118 GILVTNVAASKLLLPDPIDFKTTNINLIVGQEYDLNNLVKMLSRTGYKKVSQVLSQGEYS 177

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I   S  +    
Sbjct: 178 LRGDILDIFERSAE-FPYRLEFFGDEIDGIRIFNPENQTSIENIESILIKPASDILLSEK 236

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                 + ++  L+  +              L+  +   L   +       I  +  Y  
Sbjct: 237 DYARGRENLEAILEKTVD-----------PALKSYLEELLINAKEEFHHADIRKFLSYFY 285

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG-------DFHRKATLAEYGFR 503
            +       T+ +Y+P  S +F D+    + + +            D  +  +L      
Sbjct: 286 QKE-----WTILDYLPVHSPVFFDDFQKIVDRHAQFELETAGLLTDDLQKCKSL------ 334

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
             S       +++++   +P T   S   G   L+        Q         P  E  S
Sbjct: 335 --STQKYFADKYQDYRQYKPATFFSSFQKGLGNLKFDALYQFNQY--------PMQEFFS 384

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q   + +EIN   + G  I+L   +    + L + L E +I + Y+        R  
Sbjct: 385 ---QFSLLKEEINRYKKSGYTIILQANSSAGLQSLHKNLQEYDIHLDYI--------REA 433

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            I+     K  V +    L +G +  +  ++ I + +       +    Q I
Sbjct: 434 EIQ-----KNAVQLIEGNLVQGFNFVDEKIILITEYEIIHKKIKRKIRRQNI 480



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 73/188 (38%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     +    + + +     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLREIDRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        Y+H ++  +     + D   G++D+LV   +
Sbjct: 826 QVYYLYNKVDTIEQKVSELRELIPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G L +   L   +GR+ R      I YA  + +  ++  
Sbjct: 886 IETGVDIPNANTLFVENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKILT 938

Query: 702 DETTRRRE 709
           + + +R E
Sbjct: 939 EVSEKRLE 946


>gi|299143244|ref|ZP_07036324.1| transcription-repair coupling factor [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298517729|gb|EFI41468.1| transcription-repair coupling factor [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 1161

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 81/509 (15%), Positives = 196/509 (38%), Gaps = 48/509 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              +L  I +      + G+T          ++  +++P +++AP+ + A ++Y +  N 
Sbjct: 14  FKDILSSIKNDITPIGVYGITDGQIGHMAFSILSEIKKPILIIAPDNLKARKIYEDLLNL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL-LERNDCIVV 275
              +   Y              P+ + ++    S +    ++R  A ++L + RN  +V 
Sbjct: 74  GIKDCDLY--------------PKREIFLYDRDSKSLDNIKIRIRAMQNLAMNRNRVLVA 119

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           ++ +    I   E + + I+ +   D ++ K L  +L+   Y+R+      G F + G  
Sbjct: 120 TTEALRDKIADREVFKKYILNITCSDELDIKLLEKNLITMGYERRSQVEGVGQFAIRGAI 179

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+        +R+ +F  +++ I  F   T + I N+  ++I   S ++       T 
Sbjct: 180 IDIYTPIS---PYRIELFDVEVDSIRSFDIATQRSIENLTDVEIGPVSDFLLLDEYRQTI 236

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K +  ELK        +      +RL ++ +  +  L    +  +++    ++      
Sbjct: 237 LKNLNAELKK------SKLSGNYRERLNEKFSKYINSLTENLTIANMDLIMPFV----EE 286

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E   ++ +Y  E  ++ +DE +  I +   +        +    +G  L +    +    
Sbjct: 287 EKLNSIIDYYNEQPIILIDEPNRCIDRARVLEVEQKDNLSEQINFGEALKAHEKVQFDLN 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           +    ++  +I+   T      E    +IV               I + R +++   D++
Sbjct: 347 KTILKIKELSIITLNTLTVESKEFSPRVIVN---------FRMKSITNYRGKMKLFVDDL 397

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                +G ++++       A+ L   L +  + VRY           E   + ++   ++
Sbjct: 398 KDYTYRGYKVVILAGNDNKAKRLCNTLIDFGLTVRY-----------EEHFEAQIKSSEI 446

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGF 664
           +V    L +G +I +   V I  ++  G 
Sbjct: 447 IVTTGTLHDGFEISDIKFVIINYSEIYGL 475



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 75/198 (37%), Gaps = 23/198 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE-----INLAA 579
           T+ ++ATP    L+     I +  +    + +PP E    +T V +  D      I    
Sbjct: 768 TLTLTATPIPRTLQMSMVGIRDMSV----IEEPPEERFPVQTYVLEYNDMMIREAILKEI 823

Query: 580 QQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++G ++          E    +L   + E    +   H ++      + +      +FDV
Sbjct: 824 ERGGQVYFVYNKVANIENKLIELRNLVPEAKFNIA--HGQMSEQLLEDTMISFINHEFDV 881

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+   ++  G+DI     + + DA++ G  +    L Q  GR  R+       +      
Sbjct: 882 LLCSTIIETGMDIQNANTIIVSDANRLGLSQ----LYQLRGRIGRSNKIAYAYFTYGRDI 937

Query: 696 SIQLAIDETTRRREKQLE 713
           S    + E  ++R K ++
Sbjct: 938 S----LSEIAQKRLKSIK 951


>gi|317970142|ref|ZP_07971532.1| transcription-repair coupling factor [Synechococcus sp. CB0205]
          Length = 1183

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 90/497 (18%), Positives = 174/497 (35%), Gaps = 69/497 (13%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G     +    + +    + P +V+ P    A +  +  +     +A  Y  S    Y
Sbjct: 31  LSGAGRGARALISSVLAGCAEAPLLVVVPTLEEAGRWAALLELMGWSSAQLYPTSEGSPY 90

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           +P  + P ++    +   ++E +D           +    IV +  +    +    +   
Sbjct: 91  EP--FDPTSEITWGQLQVLSELLDA----------KGRCAIVATERALQPHLPPPPALQA 138

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             + L+ GD  E + L  +L +  Y+R       G++   GD +++FP   E +  R+  
Sbjct: 139 QCLSLRKGDEFELEALGETLTRLGYERVTSIEQEGSWSRRGDIVDVFPVSAE-LPVRLEF 197

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG ++E++ EF P + + +  +E +++  + +              ++E +   L +L  
Sbjct: 198 FGEELEKLREFDPASQRSLDPIEVVRLTPSGYGPLIAD-------ALREGMPEGLDQLLS 250

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
                             E L   G+ + +    R L G    E P +L +Y+P+ +L+ 
Sbjct: 251 P--------------EASEQLLEGGTPEGM----RRLMGLAWSE-PASLLDYLPDGTLIA 291

Query: 473 VDESHVTIPQISGMYRGD-FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           +DE    + Q    +     H     AE G  LP+ +  RP         R     ++  
Sbjct: 292 IDERRHCLSQGQQWFDHAIEHHAEVCAELGVELPAVLHRRP-EEALAAAERFQGFDLA-- 348

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
               EL++         +    +   P        Q   + + I    +   R+ L    
Sbjct: 349 ----ELQESDNHPNNFDLSSRPVPAYP-------NQFGKLAELIKGFQKDKARVWLLSAQ 397

Query: 592 KRMAEDLTEYLYERNIRVRYM-----HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
              A  L   L E +   R++     H  +  L        L+        G   L EGL
Sbjct: 398 PSRAVAL---LEEHDCISRFVPNPADHPAIDRLIEQNTPVALKTK------GTAEL-EGL 447

Query: 647 DIPECGLVAILDADKEG 663
            +P   L  I D +  G
Sbjct: 448 QLPAWKLALITDREFFG 464



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 17/195 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E V   I    
Sbjct: 763 VLTLSATPIPRTLYMSLSGVREMSLITT----PPPLRRPIKTHLAALDEEAVRSAIRQEL 818

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G +I   V      E++ E L +    +R +  H ++   E    +     G+ D+++
Sbjct: 819 DRGGQIFYVVPRVEGIEEVAEGLRQMIPGLRLLVAHGQMAEGELESAMVAFNAGEADLML 878

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA K G  +    L   +GR+    ++ +    D      
Sbjct: 879 CTTIVESGLDIPRVNTILIEDAHKFGLAQ-LYQLRGRVGRSGIQAHAWLFYPGDASLSDA 937

Query: 698 QLAIDETTRRREKQL 712
                   R R  Q 
Sbjct: 938 AR-----QRLRAIQE 947



 Score = 38.9 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 20/195 (10%)

Query: 33  KQLEVDKTMVADAMRR---IRSEAGKHRKNAAK-RMLIHQRENTASKGEFQSQSSISMSE 88
           K L+++K  +    R    ++   G  R  A +   L   R  + S  +       + + 
Sbjct: 505 KFLKLEKLAIGSEARDYLVVQYADGLLRVAADQLGSLGRYRATSDSPPDLNRMGGTAWN- 563

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
            + +E + + +      L +L    +   K      P      N              Y 
Sbjct: 564 -KAKERARKAVRKVALDLVKLYAERH---KAPGFAFPVDGPWQNELEDSF-------PYE 612

Query: 149 PSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAMQ--RPAIVMAPNKI 204
           P+ DQ  AIA + + +   +   +L+ G  G GKT   +  + +A+   +   ++AP  +
Sbjct: 613 PTPDQVKAIADVKRDMEQPQPMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVAMLAPTTV 672

Query: 205 LAAQLYSEFKNFFPH 219
           LA Q +      F  
Sbjct: 673 LAQQHWRSLSERFAP 687


>gi|325686483|gb|EGD28512.1| transcription-repair coupling factor [Streptococcus sanguinis SK72]
          Length = 1167

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 92/525 (17%), Positives = 192/525 (36%), Gaps = 59/525 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E   +  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F+               DT I +    +++    R  A   L++    
Sbjct: 71  LISLLGEDKVYTFL-------------ADDTPIAEFVFASQEKIFSRLDALNFLIDHQKS 117

Query: 273 IVVSSVSCIYGIGSVES--YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            ++ +      +   +S  +    + L +G   +   L+  L +  YK+    + +G + 
Sbjct: 118 GILVTNVAASKLLLPDSIDFKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYS 177

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I   S  +  + 
Sbjct: 178 LRGDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIENIESILIKPASDILLSKK 236

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                 + ++  L+  +              L+  +   L   +       I  +  Y  
Sbjct: 237 DYARGRENLEAILEKAVD-----------PALKSYLEELLISAKEEFHHADIRKFLSYFY 285

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
            +       T+ +Y+P  S +F D+    + + +              +    L S    
Sbjct: 286 QKE-----WTILDYLPVHSPVFFDDFQKIVDRHAQFELETAGLLTDDLQKSKAL-SSQKY 339

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
              +++++   +P T   S   G   L+        Q         P  E  S   Q   
Sbjct: 340 FADKYQDYRQYKPATFFSSFQKGLGNLKFDALYQFNQY--------PMQEFFS---QFPL 388

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + +EIN   + G  I+L   +    ++L + L E +I + Y+             ++  +
Sbjct: 389 LKEEINRYKKSGYTIILQANSSSGLQNLHKNLQEYDIHLDYI-------------KEAEI 435

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            K  V +    L +G +  +  +V I + +       +    Q I
Sbjct: 436 HKNAVQLIEGNLVQGFNFVDEKIVLITEYEIIHKKIKRKIRRQNI 480



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 75/188 (39%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     +    + + +     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLREIDRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E    + + Y+H ++  +     + D   G++D+LV   +
Sbjct: 826 QVYYLYNKVDTIEQKVSELRELIPEVSIGYVHGQMSEIRLENTLLDFINGEYDILVTTTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G L +   L   +GR+ R      I YA  + +  ++  
Sbjct: 886 IETGVDIPNANTLFVENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKILT 938

Query: 702 DETTRRRE 709
           + + +R E
Sbjct: 939 EVSEKRLE 946


>gi|268318833|ref|YP_003292489.1| Transcription-repair-coupling factor [Lactobacillus johnsonii
           FI9785]
 gi|262397208|emb|CAX66222.1| Transcription-repair-coupling factor [Lactobacillus johnsonii
           FI9785]
          Length = 1165

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 90/521 (17%), Positives = 187/521 (35%), Gaps = 55/521 (10%)

Query: 158 AQLLKGIHSR--EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
            +L   I     EK  LL GV        + ++++A Q+  I++  N+  A  L  E  N
Sbjct: 11  KELNNFIEKAPVEKRSLLTGVNSGAFAAVLMQMLKAWQQTLILVEDNEEKAQTLLDELGN 70

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
             P + V  F        P      T T I     ++      R      L E+   IVV
Sbjct: 71  LLPDDMVFGF--------PVDATIATQTAIASPDELS-----QRLQTLEFLAEKRAGIVV 117

Query: 276 SSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
            +   + Y +     +++     K     +  +L   L +  Y+R+ I    G F   GD
Sbjct: 118 VTPQALQYKLSDPRDFTKAKKIFKPEAEFDLDKLTEWLTQAGYRRESIVARPGEFARRGD 177

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++I+P   E+   R+ +FG++++ + EF   T + +   ++I I      V        
Sbjct: 178 ILDIYPLDQEN-PIRIELFGDEVDTVKEFDSATQRSLEEKDSISIGPALDRVFSPHNFQE 236

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A++ IK+++              E + ++      +++LE  G   +      YL  R+ 
Sbjct: 237 AVEKIKQDMSE---------STAEEESVKNHFVKAIDLLEAGGLPDNYAFLIDYLLPRS- 286

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
                 L +Y+ +D LL  D+       ++ +   +    +   + G  L S        
Sbjct: 287 ----FNLIDYLDKDGLLLFDDWQSIKKNVADVDAQNEAFISEEIKAGAMLNSQKLRHSFE 342

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
                  +   +      G         +  +QI+  T       E++   +Q+  +  E
Sbjct: 343 RVVQKSKQAQMLFSLFQKG------MGRLKFDQILNFTTR-----EVQQFFSQMPLIKSE 391

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +   + +   ++L   ++  A+ + + L +  + +  + ++            L   K  
Sbjct: 392 LTRFSNEENTVILQADSETRAKQIAQNLVDYGVDIPVVKAD-----------QLLSNKAQ 440

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + VG      G  +P   LV + + +           ++T+
Sbjct: 441 ITVGN--FAHGFALPSLDLVYLTERELFNQRPHHRKRVKTL 479



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V + +    ++  
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPIQTYVMEEMPSIVREAVLREMKRNG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   L E     +  Y+H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFFLHNRIDDIDKIVSQLEELIPEAKIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + + DAD  G L     L   IGR+AR
Sbjct: 885 IETGVDMPNVNTMIVEDADHYG-LSQLYQLRGRIGRSAR 922


>gi|323126266|gb|ADX23563.1| Transcription-repair coupling factor [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 1166

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 94/549 (17%), Positives = 197/549 (35%), Gaps = 67/549 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I     G+ S ++ QL++G++GS K   MA      Q   +VM   +    +L S+
Sbjct: 9   QNKKIQAWHSGLASLDR-QLVMGLSGSSKALAMASAFLDSQEKIVVMTSTQNEVEKLASD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +      V  F +  D      ++  +   ++K  S  E +  +R+       +    
Sbjct: 68  LSSLLGEELVYQFFA--DDVAAAEFIFAS---MDKALSRIETLQFLRNP------KSQGV 116

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++VS       + + + +++  +QL +G+  +   L   L+   Y++    I  G F   
Sbjct: 117 LIVSLSGLRTLLPNPDVFTKSQIQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++I+    +++ +R+  FG+DI+ I +F+P T +    +E I I   S  +      
Sbjct: 177 GDILDIYEI-TQELPYRLEFFGDDIDSIRQFHPETQKSFEQLEGIFINPASDLIFEASDF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++     L+  L   + + +      L           +     + I  +       
Sbjct: 236 QRGIEQ----LEKALQTAQDDKKSYLEDVLAVS--------KNGFKHKDIRKFQSLFY-- 281

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   +L +YIP+ + +F D+    + + +       +      + G  L S ++   
Sbjct: 282 ---EKEWSLLDYIPKGTPIFFDDFQKLVDKNARFDLEIANLLTEDLQQGKAL-SNLNYFA 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             + E    +P T   +   G   ++  Q   + Q             ++    Q   + 
Sbjct: 338 DNYRELRHYKPATFFSNFHKGLGNIKFDQMHQLTQYA-----------MQEFFNQFPLLI 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEI    +    +++ V ++   E L +   +   R+  + S  + + R           
Sbjct: 387 DEIKRYQKNQTTVIVQVESQYAYERLEKSFQDYQFRLPLV-SANQIVSRESQ-------- 437

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
               + I  +  G    +  L  I                + I R AR  N   I  A+ 
Sbjct: 438 ----IVIGAISSGFYFADEKLALI---------TEHEIYHKKIKRRARRSN---ISNAER 481

Query: 693 ITKSIQLAI 701
           +    +LA+
Sbjct: 482 LKDYNELAV 490



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 81/191 (42%), Gaps = 16/191 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGG 821

Query: 584 RIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++      +  + K++AE L E + E +I   ++H ++  ++    + D   G +DVLV 
Sbjct: 822 QVFYVYNKVDTIDKKVAE-LQELVPEASI--GFVHGQMSEIQLENTLIDFINGDYDVLVA 878

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DI     + I +AD  G L +   L   +GR+ R      I YA  + +  +
Sbjct: 879 TTIIETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDK 931

Query: 699 LAIDETTRRRE 709
           +  + + +R E
Sbjct: 932 VLTEVSEKRLE 942


>gi|251781475|ref|YP_002995776.1| putative transcription-repair coupling factor [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390103|dbj|BAH80562.1| putative transcription-repair coupling factor [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 1166

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 94/549 (17%), Positives = 197/549 (35%), Gaps = 67/549 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I     G+ S ++ QL++G++GS K   MA      Q   +VM   +    +L S+
Sbjct: 9   QNKKIQAWHSGLASLDR-QLVMGLSGSSKALAMASAFLDSQEKIVVMTSTQNEVEKLASD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +      V  F +  D      ++  +   ++K  S  E +  +R+       +    
Sbjct: 68  LSSLLGEELVYQFFA--DDVAAAEFIFAS---MDKALSRIETLQFLRNP------KSQGV 116

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++VS       + + + +++  +QL +G+  +   L   L+   Y++    I  G F   
Sbjct: 117 LIVSLSGLRTLLPNPDVFTKSQIQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++I+    +++ +R+  FG+DI+ I +F+P T +    +E I I   S  +      
Sbjct: 177 GDILDIYEI-TQELPYRLEFFGDDIDSIRQFHPETQKSFEQLEGIFINPASDLIFEASDF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++     L+  L   + + +      L           +     + I  +       
Sbjct: 236 QRGIEQ----LEKALQTAQDDKKSYLEDVLAVS--------KNGFKHKDIRKFQSLFY-- 281

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   +L +YIP+ + +F D+    + + +       +      + G  L S ++   
Sbjct: 282 ---EKEWSLLDYIPKGTPIFFDDFQKLVDKNARFDLEIANLLTEDLQQGKAL-SNLNYFA 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             + E    +P T   +   G   ++  Q   + Q             ++    Q   + 
Sbjct: 338 DNYRELRHYKPATFFSNFHKGLGNIKFDQMHQLTQYA-----------MQEFFNQFPLLI 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEI    +    +++ V ++   E L +   +   R+  + S  + + R           
Sbjct: 387 DEIKRYQKNQTTVIVQVESQYAYERLEKSFQDYQFRLPLV-SANQIVSRESQ-------- 437

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
               + I  +  G    +  L  I                + I R AR  N   I  A+ 
Sbjct: 438 ----IVIGAISSGFYFADEKLALI---------TEHEIYHKKIKRRARRSN---ISNAER 481

Query: 693 ITKSIQLAI 701
           +    +LA+
Sbjct: 482 LKDYNELAV 490



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 81/191 (42%), Gaps = 16/191 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGG 821

Query: 584 RIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++      +  + K++AE L E + E +I   ++H ++  ++    + D   G +DVLV 
Sbjct: 822 QVFYVYNKVDTIDKKVAE-LQELVPEASI--GFVHGQMSEIQLENTLIDFINGDYDVLVA 878

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DI     + I +AD  G L +   L   +GR+ R      I YA  + +  +
Sbjct: 879 TTIIETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDK 931

Query: 699 LAIDETTRRRE 709
           +  + + +R E
Sbjct: 932 VLTEVSEKRLE 942


>gi|55821999|ref|YP_140440.1| transcription repair coupling factor [Streptococcus thermophilus
           CNRZ1066]
 gi|55737984|gb|AAV61625.1| transcription repair coupling factor [Streptococcus thermophilus
           CNRZ1066]
          Length = 1168

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 156/440 (35%), Gaps = 45/440 (10%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G +GS K   MA  +        ++   +  A QL  +       + V  F     
Sbjct: 28  QLVMGFSGSSKAVAMASALSNQVPKIFIVTSTQNEAEQLVGDLSAILGEDKVYSFF---- 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVE 288
                      D    +    + +    R  +   L++      +V S V     + +  
Sbjct: 84  ---------ADDVSAAEFIFASPEKTHSRLESLNFLMDEEASGVLVTSLVGTKLHLPNPR 134

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            Y    + L +G   +   L   L    Y+R +  +  G F   GD ++I+    E + +
Sbjct: 135 VYKDSRIDLVLGKEYDLDALSRHLTHIGYQRVEQVLSPGEFSRRGDILDIYELTAE-LPY 193

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FG++I+ I +F   + + + N++ + I      +  R     A    ++ L+  + 
Sbjct: 194 RLEFFGDEIDGIRQFDSDSQKSLNNLDHVVISPADDIILTREDYQRA----EKALESAVS 249

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
             +   +            Y  E+L  T      ++  ++L+     +   TLF+Y+P+ 
Sbjct: 250 RSDGLHK-----------AYLEEVLSVTIDGHRHKDLRKFLSLFY--DKAYTLFDYLPKG 296

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           + +F+D+    + +   +     +        G  L S ++     F+     +P +   
Sbjct: 297 TPVFIDDFQKIVDRHGRLELEVANLLTEDLHQGKSL-SHLNYFVDSFKTLRNYQPASFFS 355

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           +   G   L+  +     Q             ++    Q   + DEI    +    ++L 
Sbjct: 356 NFHNGLGNLKFDKLYQFTQYP-----------MQEFFNQFPLLIDEIRRYTKNKATVILQ 404

Query: 589 VLTKRMAEDLTEYLYERNIR 608
           V + +    L E L E N+ 
Sbjct: 405 VGSDKQLNSLKETLEEYNLD 424



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    II        PV+     T    + + I     +G 
Sbjct: 764 VLTLTATPIPRTLHMSMLGIRDLSIIETAPTNRYPVQTYVMETNPGLIREAILREMDRGG 823

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          +     L+E     R  ++H ++  +     + D   G +D+LV   +
Sbjct: 824 QIFYIYNRVETIDQKVSELHELVPEARIGFVHGQMSEVMLENTLLDFLNGDYDILVATTI 883

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+DIP    + I +AD  G L +   L   +GR+ R   + ++ + D +
Sbjct: 884 IETGIDIPNVNTLLIENADHMG-LSTLYQLRGRVGRSNRIAYAYLMYHPDKV 934


>gi|300362407|ref|ZP_07058583.1| transcription-repair coupling factor [Lactobacillus gasseri JV-V03]
 gi|300353398|gb|EFJ69270.1| transcription-repair coupling factor [Lactobacillus gasseri JV-V03]
          Length = 1171

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 90/510 (17%), Positives = 196/510 (38%), Gaps = 53/510 (10%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           +EK  LL GV     +  + +++   QRP I++  ++  A  L  E  N  P N V  F 
Sbjct: 22  KEKRSLLTGVNSGAFSAVLMQMLSTWQRPLILVEDSEDKAQMLLDELGNLLPDNMVFSF- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIG 285
                  P      T T I     ++      R    + L E+   IVV +   + Y + 
Sbjct: 81  -------PVDATIATQTAIASPDELS-----QRLQTLQFLTEKRAGIVVVTPQALQYKLS 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
               +++     K     +  EL +   +  Y+R++I    G F   GD ++++P   E+
Sbjct: 129 DPRDFTKAKQVFKPEAEFDLDELTAWFTQAGYRRENIVARPGEFARRGDILDVYPLDQEN 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
             +R+  FG++++ + EF   T + +   + + I      V     L+ A+K IK+++K 
Sbjct: 189 -PFRIEFFGDEVDTVKEFDAATQRSLEEKDIVSIGPALDRVFSSRNLHEAVKKIKQDMKK 247

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
            + +          + ++      +++LE  G  ++      YL  ++       L +Y+
Sbjct: 248 SIAK---------EENVKNHFVKAIDLLEADGLPENYAFLVDYLLPKS-----FNLIDYL 293

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
            ++ LL  D+       ++ +   +    +   + G  L S        FE+        
Sbjct: 294 DKNGLLLFDDWQAIKKNVADVDAQNEAFISEEIKAGAMLNSQKLR--HNFEQVVQKVKQA 351

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
            V+     S   +    +  +QI+  T       E++   +Q+  +  E+   A +   +
Sbjct: 352 QVIF----SLFQKGMGRLKFDQILNFTTR-----EVQQFFSQMPLIKSELKRFANEENTV 402

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           +L   +   A+ +T+ L +  + +  + S+   +++ +             + +     G
Sbjct: 403 ILQADSATRAKQITQNLVDYGVDLPIVKSDQILIKKAQ-------------ITVGDFAHG 449

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             +P   LV + + +           I+T+
Sbjct: 450 FALPSLNLVYLTERELFNQRPHHRKRIKTL 479



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V + +    ++  
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPIQTYVMEEMPSVVREAVLREMKRNG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   L E     +  Y+H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFFLHNRIDDIDKVVSRLEELIPEAKIEYIHGRMSENQMEDIMYRFSRNEFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + + +AD  G L     L   IGR+AR
Sbjct: 885 IETGVDMPNVNTMIVENADHYG-LSQLYQLRGRIGRSAR 922


>gi|39995128|ref|NP_951079.1| transcription-repair coupling factor [Geobacter sulfurreducens PCA]
 gi|39981890|gb|AAR33352.1| transcription-repair coupling factor [Geobacter sulfurreducens PCA]
 gi|298504158|gb|ADI82881.1| transcription-repair coupling factor [Geobacter sulfurreducens
           KN400]
          Length = 1157

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 98/510 (19%), Positives = 184/510 (36%), Gaps = 48/510 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             +L   +        L G+ GS   + +A++I     P +V+ P+   AA+L +E + F
Sbjct: 9   FKRLTDRLTPPAARLTLAGLRGSSPAYLLARLIGEAGAPFLVVVPDAEAAAELTTELRFF 68

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                                 P  DT   +++S +  +   R +  R L +R    VV+
Sbjct: 69  TGRPGDILLF------------PAWDTSPFEKASPHADVTAQRLAVLRRLADRRAAAVVT 116

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +   +   +          +    G+  ++ +LLS LV   Y    +   RGTF V G  
Sbjct: 117 TPEALRQRVVPRSLLDSASLYFLPGEESDRDDLLSRLVTLGYLNVPLVEDRGTFAVRGGI 176

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++IFP    D+  R+  FG+ ++ I  F PL+ + ++ +E + +  +   +    TL  A
Sbjct: 177 VDIFPPGF-DLPVRIEFFGDFVDTIRSFEPLSQRSLQPLEELLLLPSRELLLTADTLQGA 235

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              IK     R  +L       E   L +R    LE L+       +E            
Sbjct: 236 ASRIK----TRCDDL-------EISPLVRR--ELLEQLQNGLYPAGVEWLLPLFHQNLE- 281

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
               TL +Y   D++  + +      +   + R          E G   P   ++  L  
Sbjct: 282 ----TLLDY-AGDAVRVLVDPAAQEEEGERLSRELEEASDRARERGELFP-APESLFLAP 335

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL-VDPPVEIRS-ARTQVEDVYD 573
            +         +V+  P    L   +G   E I   T    D  V+I   +   +  +  
Sbjct: 336 ADTAAALAAGRLVTI-PF---LHLNEGDSPETIDIATETNADLKVDISPDSEGVLRPLAA 391

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +    ++  R+++    +  A+ L E L    + +                R+   G+ 
Sbjct: 392 RLTGWIEERQRVIIACHQRGQAQRLYELLAHYPVPLTVSDRPFPAE------RERDDGRV 445

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEG 663
           D+++    +  G  +PE  LV I + +  G
Sbjct: 446 DIVI--GEISRGFRLPEGRLVVIAEEEIFG 473



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 72/200 (36%), Gaps = 13/200 (6%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    II    +    V+   ART  E + + +    ++G 
Sbjct: 770 ILTLTATPIPRTLYMSLMGIRDLSIIDTPPVDRLAVKTFVARTSDELIREAVLRELRRGG 829

Query: 584 RILLTVLTKRM----AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +      E L   + E  I V   H ++   E  +++     G+ ++L+  
Sbjct: 830 QVFFVHNRVQSIGAWYEHLRRIVPEAKIAVG--HGQMDEGELEKVMLGFMHGETNLLLCT 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+              +I  
Sbjct: 888 TIIESGLDIPSANTLIVDRADTFGLAQ----LYQLRGRVGRSRQRAYAYLLIPGEGAISS 943

Query: 700 AIDETTRRREKQLEHNKKHN 719
             D   R R  Q  +     
Sbjct: 944 --DARERLRIIQELNELGAG 961


>gi|199598792|ref|ZP_03212204.1| Transcription-repair coupling factor (superfamily II helicase)
           [Lactobacillus rhamnosus HN001]
 gi|199590297|gb|EDY98391.1| Transcription-repair coupling factor (superfamily II helicase)
           [Lactobacillus rhamnosus HN001]
          Length = 1175

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 83/504 (16%), Positives = 178/504 (35%), Gaps = 70/504 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           +    L+ G++GS KT     +++  ++  +++  N+  A +L ++  +      V  F 
Sbjct: 21  KTGRHLVTGLSGSAKTVFFGALLQQQKKQLLIVENNRFHADELAADLSSLLGDALVYDF- 79

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
                       P  D    + +  + +    R +A   +      I+V+S++    I  
Sbjct: 80  ------------PVEDVLAAEVAVSSPETRNDRINALTFIQSGQPGIIVTSLAGYKRILP 127

Query: 287 -VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
              +++   + + +   ++ + +   LV   Y+R  +    G F + G  I+I+P + +D
Sbjct: 128 APTAWAASELVVDMDSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDIYPLNQDD 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +F  +I+ I  F   T + ++ ++ I I   +  +     L  A   I    K 
Sbjct: 188 -PIRIELFDTEIDSIRSFDIATQRSLKKLDQIAIAPATDMIASDQVLTDAGAQI---GKQ 243

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                 K       Q +   +    + L+     +++  Y+  L   +       + +Y+
Sbjct: 244 ATAYKAKVKDAAAKQAITDGLLTTSQQLQALERPENLALYAPELYPEHHR-----ITDYL 298

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS----------CMDNRP-LR 514
             D+L+  D+    +   + + +      + L E G  LP             D  P L 
Sbjct: 299 AGDALVAFDDYSRLLDSDTNLVQDTAEWYSQLQEEGRLLPKTPNPTIQALNQRDRHPRLY 358

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
              +        + S T             V+Q                  +Q+  +  E
Sbjct: 359 LSLFQKGMGQLRLDSLTNVP-------SRNVQQF----------------FSQMPLLKTE 395

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            +   +Q   ++  V  K   E L+  L++  I      S V T         L  GK  
Sbjct: 396 TDRWVKQKQTVVFLVSDKNRLEKLSATLHDFEI------SNVVTEP-----NQLLSGKVQ 444

Query: 635 VLVGINLLREGLDIPECGLVAILD 658
           +      L+ G ++P+  LV + +
Sbjct: 445 L--TDGSLKNGFELPDLKLVVVTE 466



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I    ++G 
Sbjct: 769 VLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGG 828

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        Y H ++   +   +I D   G +DVLV   +
Sbjct: 829 QVFYLHNRVEDMERTVSQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTI 888

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I +AD  G L     L   IGR++R      + YA  + + +   +
Sbjct: 889 IETGVDMPNANTLIIENADHYG-LSQLYQLRGRIGRSSR------VAYAYFMYQPM-KVL 940

Query: 702 DETTRRREKQLE 713
           +E   +R + ++
Sbjct: 941 NEVAEKRLQAIK 952


>gi|332359490|gb|EGJ37309.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK1056]
          Length = 1167

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 92/525 (17%), Positives = 190/525 (36%), Gaps = 59/525 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E   +  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F+               DT I +    +++    R  A   L++    
Sbjct: 71  LISLLGEDKVYTFL-------------ADDTPIAEFVFASQEKIFSRLDALNFLIDHQKS 117

Query: 273 IVVSSVSCIYGIGSVES--YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            ++ +      +   +S  +    + L +G   +   L+  L +  YK+    + +G + 
Sbjct: 118 GILVTNVAASKLLLPDSIDFKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYS 177

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I   S  +    
Sbjct: 178 LRGDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIENIESILIKPASDILLSEK 236

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                 + ++  ++  +              L+  +   L   +       I  +  Y  
Sbjct: 237 DYTRGQENLEAIIEKAVD-----------PTLKSYLEEILISAKEEFHHADIRKFLSYFY 285

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
            +       T+ +Y+P  S +F D+    + + +              +    L S    
Sbjct: 286 QKE-----WTILDYLPVHSPVFFDDFQKIVDRHAQFELETASLLTDNLQNCKAL-SSQKY 339

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
              +++++   +P T   S   G   L+        Q         P  E  S   Q   
Sbjct: 340 FADKYQDYRQYKPATFFSSFQKGLGNLKFDALYQFNQY--------PMQEFFS---QFSL 388

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + +EIN   + G  I+L   +    + L + L E +I + Y+             +D  +
Sbjct: 389 LKEEINRYKKSGYTIILQANSSAGLQSLHKNLQEYDIHLDYI-------------KDAEI 435

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            K  V +    L +G +  +  +V I + +       +    Q I
Sbjct: 436 QKNAVQLIEGNLVQGFNFVDEKIVLITEYEIIHKKIKRKIRRQNI 480



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 75/188 (39%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     +    + + +     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLREIDRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E    + + Y+H ++  +     + D   G++D+LV   +
Sbjct: 826 QVYYLYNKVDTIEQKVSELRELIPEVSIGYVHGQMSEIRLENTLLDFINGEYDILVTTTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G L +   L   +GR+ R      I YA  + +  ++  
Sbjct: 886 IETGVDIPNANTLFVENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKILT 938

Query: 702 DETTRRRE 709
           + + +R E
Sbjct: 939 EVSEKRLE 946


>gi|327467732|gb|EGF13226.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK330]
          Length = 1167

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 92/525 (17%), Positives = 192/525 (36%), Gaps = 59/525 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E  ++  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEESEK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F+               DT I +    +++    R  A   L++    
Sbjct: 71  LISLLGEDKVYTFL-------------ADDTPIAEFVFASQEKIFSRLDALNFLIDHQKS 117

Query: 273 IVVSSVSCIYGIGSVES--YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            ++ +      +   +S  +    + L +G   +   L+  L +  YK+    + +G + 
Sbjct: 118 GILVTNVAASKLLLPDSIDFKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYS 177

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I   S  +  + 
Sbjct: 178 LRGDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIENIESILIKPASDILLSKK 236

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                 + ++  L+  +              L+  +   L   +       I  +  Y  
Sbjct: 237 DYARGRENLEAILEKAVD-----------PALKSYLEELLISAKEEFHHTDIRKFLSYFY 285

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
            +       T+ +Y+P  S +F D+    + + +              +    L S    
Sbjct: 286 QKE-----WTILDYLPVHSPVFFDDFQKIVDRHAQFELETASLLTDDLQNCKAL-SSQKY 339

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
              +++++   +P T   S   G   L+        Q         P  E  S   Q   
Sbjct: 340 FADKYQDYRQYKPATFFSSFQKGLGNLKFDALYQFNQY--------PMQEFFS---QFPL 388

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + +EIN   + G  I+L   +    + L + L E +I + Y+             ++  +
Sbjct: 389 LKEEINRYKKSGYTIILQANSSAGLQSLHKNLQEYDIHLDYI-------------KEAEI 435

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            K  V +    L +G +  +  +V I + +       +    Q I
Sbjct: 436 HKNAVQLIEGNLVQGFNFVDEKIVLITEYEIIHKKIKRKIRRQNI 480



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 73/188 (38%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     +    + + +     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLREIDRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        Y+H ++  +     + D   G++D+LV   +
Sbjct: 826 QVYYLYNKVDTIEQKVSELRELIPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G L +   L   +GR+ R      I YA  + +  ++  
Sbjct: 886 IETGVDIPNANTLFVENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKILT 938

Query: 702 DETTRRRE 709
           + + +R E
Sbjct: 939 EVSEKRLE 946


>gi|227894501|ref|ZP_04012306.1| transcriptional repair coupling factor [Lactobacillus ultunensis
           DSM 16047]
 gi|227863660|gb|EEJ71081.1| transcriptional repair coupling factor [Lactobacillus ultunensis
           DSM 16047]
          Length = 1164

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/509 (16%), Positives = 195/509 (38%), Gaps = 55/509 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+        +  + +++  ++ P I++  N+  A  LY E       +A +YF   
Sbjct: 24  KNSLITSANAGAFSLLLKQIVSELKAPLILLEENESKAQNLYGELNAILDDDAAQYF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                     P   T   + +  +      R  A   LL     I+V++   + Y + + 
Sbjct: 81  ----------PVDATIATQTAVSSPDELSSRIQALNFLLSGRPGIIVTTPQGLQYKLSAP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           +++++           E  EL + LV+  YK++ +    G F + GD ++I+P   E+  
Sbjct: 131 QAFAEARRDFVPEKEYELSELNNWLVQSGYKKEALVARPGEFAIRGDILDIYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ I EF   + +  + ++ +++ A    V  R  +  A   IK++++   
Sbjct: 190 VRIEFFGDEIDTIKEFDLSSQRSQKEIDHVEVAAAQDRVFSREAILQAADKIKKDMQD-- 247

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                       + ++   T  L+ LE  G  ++      YL      E P +L EY+P+
Sbjct: 248 -------APAPDKAVKDHFTVALDNLEDGGLPKNYAFLVDYLI-----ENPSSLLEYLPK 295

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE-WNCLRPTTI 526
           +  + +D+  +    I  + + +        + G  LP       L F + ++  +   I
Sbjct: 296 NGQILLDDLPLIKQSIDDVDKQNTAFINDELKTGAMLPHQSLR--LDFAKVFSKDKHHRI 353

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
             S        ++  G +  ++ +         E   +  Q+  +  EI    + G  ++
Sbjct: 354 YFSL------FQRSMGRL--RLGQMLNWQTREPEQFFS--QMPLIKSEIESYQKTGQTVV 403

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L    ++ A  + + + +  + +  +  +           ++  GK  ++        G 
Sbjct: 404 LQADNEKRARQIDQTMVDFGLNLPIVGED-----------EIVEGKTQIV--AGGYTSGF 450

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTI 675
            +P   LV + + +       +   I+T+
Sbjct: 451 TLPTVNLVYLTERELFNKRPQRKKRIKTL 479



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      + +  +  T   +          Q+  V  D      Q+G 
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPIQTYVMEQIPSVVKDACLREMQRGG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          ++  E L +     R    H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFYLYNRISDIDETVEKLQQLIPNARIASAHGRMSQNQLEDILYRFLNREFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 885 IETGIDMPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 922


>gi|327471614|gb|EGF17057.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK408]
          Length = 1167

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 92/525 (17%), Positives = 191/525 (36%), Gaps = 59/525 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E  ++  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKNSR-QLIMGLSASTKAITIAAGLEESEK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F+               DT I +    +++    R  A   L++    
Sbjct: 71  LISLLGEDKVYTFL-------------ADDTPIAEFVFASQEKIFSRLDALNFLIDHQKS 117

Query: 273 IVVSSVSCIYGIGSVES--YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            ++ +      +   +S  +    + L +G   +   L+  L +  YK+    + +G + 
Sbjct: 118 GILVTNVAASKLLLPDSIDFKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYS 177

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I   S  +    
Sbjct: 178 LRGDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIDNIESILIKPASDILLSEK 236

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                 + ++  L+  +              L+  +   L   +       I  +  Y  
Sbjct: 237 DYARGRENLEAILEKAVD-----------PALKSYLEELLISAKEEFYHADIRKFLSYFY 285

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
            +       T+ +Y+P  S +F D+    + + +              +    L S    
Sbjct: 286 QKE-----WTILDYLPVHSPVFFDDFQKIVDRHAQFELETAGLLTDDLQKCKAL-SSQKY 339

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
              +++++   +P T   S   G   L+        Q         P  E  S   Q   
Sbjct: 340 FADKYQDYRQYKPATFFSSFQKGLRNLKFDTLYQFNQY--------PMQEFFS---QFPL 388

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + +EIN   + G  I+L   +    + L + L E +I + Y+             ++  +
Sbjct: 389 LKEEINRYRKSGYTIILQANSSTSLQSLHKNLQEYDIHLDYI-------------KEAEI 435

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            K  V +    L +G +  +  +V I + +       +    Q I
Sbjct: 436 HKNAVQLIEGNLVQGFNFVDEKIVLITEYEIIHKKIKRKIRRQNI 480



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 75/188 (39%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     +    + + +     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLREIDRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E    + + Y+H ++  +     + D   G++D+LV   +
Sbjct: 826 QVYYLYNKVDTIEQKVSELRELIPEVSIGYVHGQMSEIRLENTLLDFINGEYDILVTTTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G L +   L   +GR+ R      I YA  + +  ++  
Sbjct: 886 IETGVDIPNANTLFVENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKILT 938

Query: 702 DETTRRRE 709
           + + +R E
Sbjct: 939 EVSEKRLE 946


>gi|325689360|gb|EGD31366.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK115]
          Length = 1167

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 92/532 (17%), Positives = 190/532 (35%), Gaps = 73/532 (13%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E   +  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F+               DT I +    +++    R  A   L++    
Sbjct: 71  LISLLGEDKVYTFL-------------ADDTPIAEFVFASQEKIFSRLDALNFLIDHQKS 117

Query: 273 IVVSSVSCIYGIGSVES--YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            ++ +      +   +S  +    + L +G   +   L+  L +  YK+    + +G + 
Sbjct: 118 GILVTNVAASKLLLPDSIDFKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYS 177

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++IF    E   +R+  FG++I+ I  F P     I+N+E+I I   S  +    
Sbjct: 178 LRGDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIQNIESILIKPASDILLSEK 236

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                 + ++  L+  +              L+  +   L   +       I  +  Y  
Sbjct: 237 DYARGRENLEAILEKAVD-----------PALKSYLEELLISAKEEFHHADIRKFLSYFY 285

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG-------DFHRKATLAEYGFR 503
            +       T+ +Y+P  S +F D+    + + +            D  +   L      
Sbjct: 286 QKE-----WTILDYLPVHSPVFFDDFQKIVDRHAQFELETAGLLTDDLQKCKAL------ 334

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
             S       +++++   +P T   S   G   L+        Q         P  E  S
Sbjct: 335 --SSQKYFADKYQDYRQYKPATFFSSFQKGLGNLKFDALYQFNQY--------PMQEFFS 384

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q   + +EIN   + G   +L   +    + L + L E  I + Y+           
Sbjct: 385 ---QFPLLKEEINRYKKSGYTTILQANSSSGLQSLHKNLQEYGIHLDYI----------- 430

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             ++  + K  V +    L +G +  +  +V I + +       +    Q I
Sbjct: 431 --KEAEIHKNAVQLIEGNLVQGFNFVDEKIVLITEYEIIHKKIKRKIRRQNI 480



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     +    + + +     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLREIDRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        Y+H ++  +     + D   G++D+LV   +
Sbjct: 826 QVYYLYNKVDTIEQKVSELRELIPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+DIP    + + +AD  G L +   L   +GR+ R   + +I   D I
Sbjct: 886 IETGVDIPNANTLFVENADHMG-LSTLYQLRGRVGRSNRIAYAYLIYRPDKI 936


>gi|324991860|gb|EGC23783.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK405]
 gi|324996250|gb|EGC28160.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK678]
 gi|325698026|gb|EGD39907.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK160]
 gi|327458484|gb|EGF04834.1| transcription-repair coupling factor [Streptococcus sanguinis SK1]
 gi|327490344|gb|EGF22131.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK1058]
          Length = 1167

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 92/525 (17%), Positives = 191/525 (36%), Gaps = 59/525 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E  ++  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKNSR-QLIMGLSASTKAITIAAGLEESEK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F+               DT I +    +++    R  A   L++    
Sbjct: 71  LISLLGEDKVYTFL-------------ADDTPIAEFVFASQEKIFSRLDALNFLIDHQKS 117

Query: 273 IVVSSVSCIYGIGSVES--YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            ++ +      +   +S  +    + L +G   +   L+  L +  YK+    + +G + 
Sbjct: 118 GILVTNVAASKLLLPDSIDFKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYS 177

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I   S  +    
Sbjct: 178 LRGDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIDNIESILIKPASDILLSEK 236

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                 + ++  L+  +              L+  +   L   +       I  +  Y  
Sbjct: 237 DYARGRENLEAILEKAVD-----------PALKSYLEELLISAKEEFYHADIRKFLSYFY 285

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
            +       T+ +Y+P  S +F D+    + + +              +    L S    
Sbjct: 286 QKE-----WTILDYLPVHSPVFFDDFQKIVDRHAQFELETAGLLTDDLQKCKAL-SSQKY 339

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
              +++++   +P T   S   G   L+        Q         P  E  S   Q   
Sbjct: 340 FADKYQDYRQYKPATFFSSFQKGLRNLKFDTLYQFNQY--------PMQEFFS---QFPL 388

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + +EIN   + G  I+L   +    + L + L E +I + Y+             ++  +
Sbjct: 389 LKEEINRYRKSGYTIILQANSSTSLQSLHKNLQEYDIHLDYI-------------KEAEI 435

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            K  V +    L +G +  +  +V I + +       +    Q I
Sbjct: 436 HKNAVQLIEGNLVQGFNFVDEKIVLITEYEIIHKKIKRKIRRQNI 480



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 75/188 (39%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     +    + + +     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLREIDRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E    + + Y+H ++  +     + D   G++D+LV   +
Sbjct: 826 QVYYLYNKVDTIEQKVSELRELIPEVSIGYVHGQMSEIRLENTLLDFINGEYDILVTTTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G L +   L   +GR+ R      I YA  + +  ++  
Sbjct: 886 IETGVDIPNANTLFVENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKILT 938

Query: 702 DETTRRRE 709
           + + +R E
Sbjct: 939 EVSEKRLE 946


>gi|257413531|ref|ZP_04743369.2| excinuclease ABC, B subunit [Roseburia intestinalis L1-82]
 gi|257203152|gb|EEV01437.1| excinuclease ABC, B subunit [Roseburia intestinalis L1-82]
          Length = 122

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 75/118 (63%), Positives = 94/118 (79%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + Y P+GDQP AI +L+KG     + Q LLGVTGSGKTFTMA VI+A+ +P +
Sbjct: 5   MDHFKLHSKYKPTGDQPHAIEELVKGFEEGNQFQTLLGVTGSGKTFTMANVIQALNKPTL 64

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
           +++ NK LAAQLY E K FFP NAVEYFVSYYDYYQPEAYVP+TDTYI K+S+INE+I
Sbjct: 65  IISHNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIAKDSAINEEI 122


>gi|310657789|ref|YP_003935510.1| transcription-repair coupling factor [Clostridium sticklandii DSM
           519]
 gi|308824567|emb|CBH20605.1| transcription-repair coupling factor [Clostridium sticklandii]
          Length = 1130

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 84/508 (16%), Positives = 183/508 (36%), Gaps = 56/508 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            + +L  I   +   L+ G+  S +      +   +++  +++  N+I A ++Y++ + +
Sbjct: 16  FSSVLGNISQNKSPLLINGLLSSQRAHIAHYLSANLEKKLVLVTSNEIEAERIYTDLEFY 75

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P   +        +Y  EA   + +         +++I+ +   A     E  D +V+S
Sbjct: 76  NPDRVLFIKNEETRFYAIEAKDRKEE---------SKRIESLIRLAQ----EDYDILVLS 122

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
             + +        Y +    L+IG      EL+  LV   Y+R+      G   + G  +
Sbjct: 123 VETLMRKYLPKRLYVESKPDLEIGSIWNLAELVDLLVHYGYEREARVEGPGQISLRGGIL 182

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +I+    E + +R+  F ++I+ I  F P++ + I  ++ I I     ++  R     A 
Sbjct: 183 DIYLPTAE-LPYRLEFFDDEIDSIRTFDPISQKSIEKIKQITISPAREFLF-REGFEEAA 240

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           K + ++L             L          +D+E +      + +  Y  Y+      +
Sbjct: 241 KRLSDDLSK------SSNDDL---------AFDIERISEGHYFEGMHKYIDYIYPDERKD 285

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD-NRPLRF 515
               LF YI ++++  + E +  + +    +           E GF L    +    L +
Sbjct: 286 ----LFSYINKEAIFVIHEPNRVLEKGENYFEEFSEDYKHALEKGFALKGQGELLYNLDY 341

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                     ++ S  P            V+     + +     E  S + ++  + +EI
Sbjct: 342 VTEYMGSHFIVLQSFLP----------KSVKGFNTASIVNFETREPVSFQGKIPALLEEI 391

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +QG  I+L    +     L + L   ++   Y+             R   + +  V
Sbjct: 392 KYQKKQGYTIVLVERDEDTIMSLYKELSNASLEPIYL-----------RDRKAEIPEGKV 440

Query: 636 LVGINLLREGLDIPECGLVAILDADKEG 663
           ++    L EG    +  L  I D +  G
Sbjct: 441 VLVKGRLTEGYVYSKSKLAVISDKEMFG 468



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 75/194 (38%), Gaps = 21/194 (10%)

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVED-----VYDEINLAAQQ 581
           +SATP    L           IR   L++ P E R    T V +     + D +     +
Sbjct: 769 LSATPIPRTLHFSLSG-----IRDMSLLEEPPEDRHPIMTYVTEAREGIILDALERELAR 823

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++       +  + + + +            H ++   +   I+ D    ++D+L+  
Sbjct: 824 GGQVFFVYNRVQTIDKMADIIRRLVPDANLAVAHGQMSPRQLENIMVDFLEKEYDILLST 883

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + + DADK G L     L   +GR++R   +  +   D +      
Sbjct: 884 TIIETGMDISNANTMIVYDADKMG-LSQLYQLRGRVGRSSRQAYAYFMYQKDKV------ 936

Query: 700 AIDETTRRREKQLE 713
            + E + +R K ++
Sbjct: 937 -LTEVSEKRLKAIK 949


>gi|332363612|gb|EGJ41393.1| transcription-repair coupling factor [Streptococcus sanguinis
           SK1059]
          Length = 1167

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 91/525 (17%), Positives = 189/525 (36%), Gaps = 59/525 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E   +  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKNSR-QLIMGLSASTKAITIAAGLEEADK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F+               DT I +    +++    R  A   L++    
Sbjct: 71  LISLLGEDKVYTFL-------------ADDTPIAEFVFASQEKIFSRLDALNFLIDHQKS 117

Query: 273 IVVSSVSCIYGIGSVES--YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            ++ +      +   +S  +    + L +G   +   L+  L +  YK+    + +G + 
Sbjct: 118 GILVTNVAASKLLLPDSIDFKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYS 177

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I   S  +    
Sbjct: 178 LRGDLLDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIENIESILIKPASDILLSEK 236

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                 + ++  L+  +              L+  +   L   +       I  +  Y  
Sbjct: 237 DYARGRENLEAILEEAVD-----------PALKSYLEELLISAKEEFHHADIRKFLSYFY 285

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
            +       T+ +Y+P  S +F D+    + + +              +    L S    
Sbjct: 286 QKE-----WTILDYLPVHSPVFFDDFQKIVDRHAQFELETASLLTDDLQNCKAL-SSQKY 339

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
              +++++   +P T   S   G   L+        Q         P  E  S   Q   
Sbjct: 340 FADKYQDYRQYKPATFFSSFQKGLGNLKFDALYQFNQY--------PMQEFFS---QFPL 388

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + +EIN   +    I+L   +    + L + L E +I + Y+             ++  +
Sbjct: 389 LKEEINRYKKSDYTIILQANSSSGLQSLHKNLQEYDIHLDYI-------------KEAEI 435

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            K  V +    L +G +  +  +V I + +       +    Q I
Sbjct: 436 HKNAVQLIEGNLVQGFNFVDEKIVLITEYEIIHKKIKRKIRRQNI 480



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 73/188 (38%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     +    + + +     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLREIDRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        Y+H ++  +     + D   G++D+LV   +
Sbjct: 826 QVYYLYNKVDTIEQKVSELRELIPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G L +   L   +GR+ R      I YA  + +  ++  
Sbjct: 886 IETGVDIPNANTLFVENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKILT 938

Query: 702 DETTRRRE 709
           + + +R E
Sbjct: 939 EVSEKRLE 946


>gi|94989515|ref|YP_597615.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS10270]
 gi|94543023|gb|ABF33071.1| Transcription-repair coupling factor [Streptococcus pyogenes
           MGAS10270]
          Length = 1167

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 91/549 (16%), Positives = 197/549 (35%), Gaps = 67/549 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +     G+ +    QL++G++GS KT  +A      Q+  +V+   +    +L S+
Sbjct: 9   QNKKVQSWHSGLTT-LGRQLVMGLSGSSKTLAIASAYLDDQKKIVVVTSTQNEVEKLASD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +      V  F  + D      ++  +   ++K  S  E +  +R+       +    
Sbjct: 68  LSSLLDEELV--FQFFADDVAAAEFIFAS---MDKALSRIETLQFLRNP------KSQGV 116

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++VS       + + + +++  +QL +G+  +   L   L+   Y++    I  G F   
Sbjct: 117 LIVSLSGLRTLLPNPDVFTKSQIQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++I+    +++ +R+  FG+DI+ I +F+P T +    +E I I   S  +      
Sbjct: 177 GDILDIYEI-TQELPYRLEFFGDDIDSIRQFHPETQKSFEQLEGIFINPASDLIFEVSDF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++     L+  L   + + +      L           +     + I  +       
Sbjct: 236 QRGIEQ----LEKALQTAQDDKKSYLEDVLAVS--------KNGFKHKDIRKFQSLFY-- 281

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   +L +YIP+ + +F D+    + + +       +      + G  L S ++   
Sbjct: 282 ---EKEWSLLDYIPKGTPIFFDDFQKLVDKNARFDLEIANLLTEDLQQGKAL-SNLNYFT 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             + E    +P T   +   G   ++  Q   + Q             ++    Q   + 
Sbjct: 338 DNYRELRHYKPATFFSNFHKGLGNIKFDQMHQLTQYA-----------MQEFFNQFPLLI 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEI    +    +++ V ++   E L +   +   R+  + S  + + R           
Sbjct: 387 DEIKRYQKNQTTVIVQVESQYDYERLEKSFQDYQFRLPLV-SANQIVSRESQ-------- 437

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
               + I  +  G    +  L  I                + I R AR  N   I  A+ 
Sbjct: 438 ----IVIGAISSGFYFADEKLALI---------TEHEIYHKKIKRRARRSN---ISNAER 481

Query: 693 ITKSIQLAI 701
           +    +LA+
Sbjct: 482 LKDYNELAV 490



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGG 821

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +I          E    +L E + E +I   ++H ++  ++    + D   G +DVLV  
Sbjct: 822 QIFYVYNKVDTIEKKVAELQELVPEASI--GFVHGQMSEIQLENTLIDFINGDYDVLVAT 879

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I +AD  G L +   L   +GR+ R      I YA  + +  ++
Sbjct: 880 TIIETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKV 932

Query: 700 AIDETTRRRE 709
             + + +R E
Sbjct: 933 LTEVSEKRLE 942


>gi|332364170|gb|EGJ41947.1| transcription-repair coupling factor [Streptococcus sanguinis SK49]
          Length = 1167

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 92/525 (17%), Positives = 191/525 (36%), Gaps = 59/525 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I+   K +H   + QL++G++ S K  T+A  +E  ++  +V+  ++  A +L S+
Sbjct: 13  QNQQISDWKKNLHKSNR-QLIMGLSASTKAITIAAGLEESEK-ILVLTSSQNEADRLASD 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F+               DT I +    +++    R  A   L++    
Sbjct: 71  LISLLGEDKVYTFL-------------ADDTPIAEFVFASQEKIFSRLDALNFLIDHQKS 117

Query: 273 IVVSSVSCIYGIGSVES--YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            ++ +      +   +S  +    + L +G   +   L+  L +  YK+    + +G + 
Sbjct: 118 GILVTNVAASKLLLPDSIDFKNTNINLTVGQEYDLNNLVKMLSRSGYKKVSQVLSQGEYS 177

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + GD ++IF    E   +R+  FG++I+ I  F P     I N+E+I I   S  +    
Sbjct: 178 LRGDILDIFERSAE-APYRLEFFGDEIDGIRIFNPENQTSIDNIESILIKPASDILLSEK 236

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                 K ++  L+  +              L+  +   L   +       I  +  Y  
Sbjct: 237 DYARGRKNLEAILEKSVD-----------PALKSYLEELLISAKEEFHHADIRKFLSYFY 285

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
            +       T+ +Y+P  S +F D+    + + +              +    L S    
Sbjct: 286 QKE-----WTILDYLPVHSPVFFDDFQKIVDRHAQFELETASLLTDDLQNCKAL-SSQKY 339

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
              +++++   +P T   S   G   L+        Q         P  E  S   Q   
Sbjct: 340 FADKYQDYRQYKPATFFSSFQKGLGNLKFDALYQFNQY--------PMQEFFS---QFPL 388

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + +EIN   + G  I+L   +    + L + L E +I + Y+             ++  +
Sbjct: 389 LKEEINRYKKSGYTIILQANSSSGLQSLHKNLQEYDIHLDYI-------------KEAEI 435

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            K  V +    L +G +  +  ++ I + +       +    Q I
Sbjct: 436 HKNAVQLIEGNLVQGFNFVDEKIILITEYEIIHKKIKRKIRRQNI 480



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 73/188 (38%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     +    + + +     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLESNPTVIREAVLREIDRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        Y+H ++  +     + D   G++D+LV   +
Sbjct: 826 QVYYLYNKVDTIEQKVSELRELIPEASIGYVHGQMSEIRLENTLLDFINGEYDILVTTTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G L +   L   +GR+ R      I YA  + +  ++  
Sbjct: 886 IETGVDIPNANTLFVENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKILT 938

Query: 702 DETTRRRE 709
           + + +R E
Sbjct: 939 EVSEKRLE 946


>gi|19745206|ref|NP_606342.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS8232]
 gi|19747295|gb|AAL96841.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes MGAS8232]
          Length = 1167

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 91/549 (16%), Positives = 197/549 (35%), Gaps = 67/549 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +     G+ +    QL++G++GS K   +A      Q+  +V+   +    +L S+
Sbjct: 9   QNKKVQSWHSGLTT-LGRQLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +      V  F  + D      ++  +   ++K  S  E +  +R+       +    
Sbjct: 68  LSSLLDEELV--FQFFADDVAAAEFIFAS---MDKALSRIETLQFLRNP------KSQGV 116

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++VS  S    + + + +++  +QL +G+  +   L   L+   Y++    I  G F   
Sbjct: 117 LIVSLSSLRTLLPNPDVFTKSQIQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++I+    +++ +R+  FG+DI+ I +F+P T +    +E I I   S  +      
Sbjct: 177 GDILDIYEI-TQELPYRLEFFGDDIDSIRQFHPETQKSFEQLEGIFINPASDLIFEASDF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++     L+  L   +   +      L           +     + I  +       
Sbjct: 236 QRGIEQ----LEKALQTAQDNKKSYLEDVLAVS--------KNGFKHKDIRKFQSLFY-- 281

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   +L +YIP+ + +F D+    + + +       +      + G  L S ++   
Sbjct: 282 ---EKEWSLLDYIPKGTPIFFDDFQKLVDKNARFDLEIANLLTEDLQQGKAL-SNLNYFA 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             + E    +P T   +   G   ++  Q   + Q             ++    Q   + 
Sbjct: 338 DNYRELRHYKPATFFSNFHKGLGNIKFDQMHQLTQYA-----------MQEFFNQFPLLI 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEI    +    +++ V ++   E L +   +   R+  + S  + + R           
Sbjct: 387 DEIKRYQKNQTTVIVQVESQYAYERLEKSFQDYQFRLPLV-SANQIVSRESQ-------- 437

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
               + I  +  G    +         DK   +       + I R AR  N   I  A+ 
Sbjct: 438 ----IVIGAISSGFYFAD---------DKLALITEHEIYHKKIKRRARRSN---ISNAER 481

Query: 693 ITKSIQLAI 701
           +    +LA+
Sbjct: 482 LKDYNELAV 490



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 81/191 (42%), Gaps = 16/191 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGG 821

Query: 584 RIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++      +  + K++AE L E + E +I   ++H ++  ++    + D   G +DVLV 
Sbjct: 822 QVFYVYNKVDTIDKKVAE-LQELVPEASI--GFVHGQMSEIQLENTLIDFINGDYDVLVA 878

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DI     + I +AD  G L +   L   +GR+ R      I YA  + +  +
Sbjct: 879 TTIIETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDK 931

Query: 699 LAIDETTRRRE 709
           +  + + +R E
Sbjct: 932 VLTEVSEKRLE 942


>gi|309799277|ref|ZP_07693525.1| transcription-repair coupling factor [Streptococcus infantis
           SK1302]
 gi|308117122|gb|EFO54550.1| transcription-repair coupling factor [Streptococcus infantis
           SK1302]
          Length = 570

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 84/525 (16%), Positives = 181/525 (34%), Gaps = 68/525 (12%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I    + +  +++ QLLLG++GS K+  +A   +   +  +VM      A +L ++  + 
Sbjct: 17  IQSWNEHLSLKQR-QLLLGLSGSAKSLAIASSAKNQDK-ILVMTSTYGEAERLVNDLISI 74

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + V  F+            P  +  +  +  I  +++ +R     S   +   +V +
Sbjct: 75  LGSDMVYPFLVDDS--------PMVEFLVSSQDKIFSRVEALRFLRDES---QKGILVCN 123

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
             +    +   + +   I++L+IG   EQ EL + L+   YK+      +G F + GD +
Sbjct: 124 LAASRLFLPDPQVFDNSILKLEIGQECEQSELKNQLISLGYKKVTQVQSQGEFSLRGDIL 183

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IF    +    R+  FG++I+ I EF   T     +   + IY  S  +      +   
Sbjct: 184 DIFE-TSQLYPNRIEFFGDEIDGIREFDAETQLSKDSQSQVLIYPASDILLTVEDYHRGQ 242

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           ++++ E+   +           +  L+  +       +       I         +    
Sbjct: 243 QFLEHEIDKTI-----------SPTLKSYLEEVFSCAKEQVLHVDIRKLLSVFYKKQ--- 288

Query: 457 PPPTLFEYIP------EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
              TL +Y+       +D    + +      +I+  +  D H    ++   +        
Sbjct: 289 --WTLIDYLNQVPIIFDDFQKIMTQYDAFDKEIASYFTEDLHNSKAVSSLQY-------- 338

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
                 ++    P T   +   G   L+        Q             ++    Q   
Sbjct: 339 FADVESQFKKYVPATFFSNFQKGLGNLKFHHLYQFNQYP-----------MQEFFNQFSF 387

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + +EI    +    I+L   +K   + L+  L E +I+V                 ++  
Sbjct: 388 LKEEIERYKKLKYTIVLQSSSKTELKKLSTILDEYDIKVD-----------NNDESEICK 436

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           G  +++     LR G    +  LV I + +       +    Q I
Sbjct: 437 GTVNLV--EGNLRHGFHFVDENLVFITEYEIFKKKIKRKYRRQNI 479


>gi|116626979|ref|YP_819598.1| transcription-repair coupling factor [Streptococcus thermophilus
           LMD-9]
 gi|116100256|gb|ABJ65402.1| Transcription-repair coupling factor (superfamily II helicase)
           [Streptococcus thermophilus LMD-9]
 gi|312277424|gb|ADQ62081.1| Transcription-repair coupling factor (Superfamily II helicase)
           [Streptococcus thermophilus ND03]
          Length = 1168

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 156/440 (35%), Gaps = 45/440 (10%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           QL++G +GS K   MA  +        ++   +  A QL  +       + V  F     
Sbjct: 28  QLVMGFSGSSKAVAMASALSNQVPKIFIVTSTQNEAEQLVGDLSAILGEDKVYSFF---- 83

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVE 288
                      D    +    + +    R  +   L++      +V S V     + +  
Sbjct: 84  ---------ADDVSAAEFIFASPEKTHSRLESLNFLMDEEASGVLVTSLVGTKLHLPNPR 134

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            Y    + L +G   +   L   L    Y+R +  +  G F   GD ++I+    E + +
Sbjct: 135 VYKDSRIDLVLGKEHDLDALSRHLTHIGYQRVEQVLSPGEFSRRGDILDIYELTAE-LPY 193

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FG++I+ I +F   + + + N+E + I      +  R     A    ++ L+  + 
Sbjct: 194 RLEFFGDEIDGIRQFDSDSQKSLNNLEHVVISPADDIILTREDYQRA----EKALESAIS 249

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
             +   +            Y  E+L  T      ++  ++L+     +   TLF+Y+P+ 
Sbjct: 250 RADGLHK-----------AYLEEVLSVTIDGHRHKDLRKFLSLFY--DKAYTLFDYLPKG 296

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           + +F+D+    + +   +     +        G  L S ++     F+     +P +   
Sbjct: 297 TPVFIDDFQKIVDRHGRLELEVANLLTEDLHQGKSL-SHLNYFVDSFKTLRNYQPASFFS 355

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           +   G   L+  +     Q             ++    Q   + DEI    +    ++L 
Sbjct: 356 NFHNGLGNLKFDKLYQFTQYP-----------MQEFFNQFPLLIDEIRRYTKNKATVILQ 404

Query: 589 VLTKRMAEDLTEYLYERNIR 608
           V + +    L E L E N+ 
Sbjct: 405 VGSDKQLNSLKETLEEYNLD 424



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    II        PV+     T    + + I     +G 
Sbjct: 764 VLTLTATPIPRTLHMSMLGIRDLSIIETAPTNRYPVQTYVMETNPGLIREAILREMDRGG 823

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          +     L+E     R  ++H ++  +     + D   G +D+LV   +
Sbjct: 824 QIFYIYNRVETIDQKVSELHELVPEARIGFVHGQMSEVMLENTLLDFLNGDYDILVATTI 883

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+DIP    + I +AD  G L +   L   +GR+ R   + ++ + D +
Sbjct: 884 IETGIDIPNVNTLLIENADHMG-LSTLYQLRGRVGRSNRIAYAYLMYHPDKV 934


>gi|76797974|ref|ZP_00780233.1| transcription-repair coupling factor [Streptococcus agalactiae
           18RS21]
 gi|76586654|gb|EAO63153.1| transcription-repair coupling factor [Streptococcus agalactiae
           18RS21]
          Length = 451

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 89/472 (18%), Positives = 183/472 (38%), Gaps = 44/472 (9%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +     G+ +  + QL++G +G+ K   +A   E + +  +V+   +  + +L S+
Sbjct: 9   QNKVVRTWHSGLVTNSR-QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQTDSDKLSSD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F +          VP  +           ++  +R        E+N  
Sbjct: 68  ISSLIGEDNVYQFFADD--------VPAAEFIFSSLDKSISRLSALRFL---KDPEKNGV 116

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++ S       + + E +S+   + +IG      +L  +LV   Y++       G F   
Sbjct: 117 LITSISGLRLLLPNPEVFSKSQYKFEIGQECYLDKLCKNLVNLGYQKVSQVFSPGEFSQR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++IF    ++  +R+  FG++I+ I +F   T + ++ +E+++I      +      
Sbjct: 177 GDILDIFEM-TQEYPYRLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDIILQDADF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
             A    K++L+  L          E QR     TY  E+L TT +     +  R+L+  
Sbjct: 236 ERA----KKKLEGYL------VTASEVQR-----TYLSEVLSTTENHFKHSDIRRFLSIF 280

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E    + +YIPE + LFVD+    + + + +            + G    S ++   
Sbjct: 281 YEKE--WGILDYIPEGTPLFVDDFQKIVDRNAKLDLEIASLLTEDLQQGKS-HSSLNYFS 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             +++    +P T   +   G   L+  +     Q             ++    Q   + 
Sbjct: 338 DPYKQLRQYQPATFFSNFHKGLGNLKFDKLHHFTQYG-----------MQEFFNQFPLLV 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           DEIN   + G  +LL V +++    L E L E  +    + S+   + + E 
Sbjct: 387 DEINRYKKSGATVLLQVDSQKGLNLLQENLKEYGLD--LIISDKNDIVQKES 436


>gi|258540716|ref|YP_003175215.1| transcription-repair coupling factor [Lactobacillus rhamnosus Lc
           705]
 gi|257152392|emb|CAR91364.1| Transcription-repair coupling factor [Lactobacillus rhamnosus Lc
           705]
          Length = 1175

 Score =  177 bits (449), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 82/502 (16%), Positives = 177/502 (35%), Gaps = 70/502 (13%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
              L+ G++GS KT     +++  ++  +++  N+  A +L ++  +      V  F   
Sbjct: 23  GRHLVTGLSGSAKTVFFGALLQQQKKQLLIVENNRFHADELAADLSSLLGDALVYDF--- 79

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS-V 287
                     P  D    + +  + +    R +A   +      I+V+S++    I    
Sbjct: 80  ----------PVEDVLAAEVAVSSPETRNDRINALTFIQSGQPGIIVTSLAGYKRILPAP 129

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
            +++   + + +   ++ + +   LV   Y+R  +    G F + G  I+I+P + +D  
Sbjct: 130 AAWAASELVVDMDSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDIYPLNQDD-P 188

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+ +F  +I+ I  F   T + ++ ++ I I   +  +     L  A   I    K   
Sbjct: 189 IRIELFDTEIDSIRSFDIATQRSLKKLDQIVIAPATDMIASDQVLTDAGARI---GKQAT 245

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
               K       Q +   +    + L+     +++  Y+  L   +       + +Y+  
Sbjct: 246 AYKAKVKDAAAKQAITDGLLTTSQQLQALERPENLALYAPELYPEHHR-----ITDYLAG 300

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS----------CMDNRP-LRFE 516
           D+L+  D+    +   + + +      + L E G  LP             D  P L   
Sbjct: 301 DALVAFDDYSRLLDSDTNLVQDTAEWYSQLQEEGRLLPKTPNPTIQALNQRDRHPRLYLS 360

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            +        + S T             V+Q                  +Q+  +  E +
Sbjct: 361 LFQKGMGQLRLDSLTNVP-------SRNVQQF----------------FSQMPLLKTETD 397

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q   ++  V  K   + L+  L++  I      S V T         L  GK  + 
Sbjct: 398 RWVKQKQTVVFLVSDKNRLDKLSATLHDFEI------SNVVTEP-----NQLLSGKVQL- 445

Query: 637 VGINLLREGLDIPECGLVAILD 658
                L+ G ++P+  LV + +
Sbjct: 446 -TDGSLKNGFELPDLKLVVVTE 466



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I    ++G 
Sbjct: 769 VLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGG 828

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        Y H ++   +   +I D   G +DVLV   +
Sbjct: 829 QVFYLHNRVEDMERTVSQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTI 888

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I +AD  G L     L   IGR++R      + YA  + + +   +
Sbjct: 889 IETGVDMPNANTLIIENADHYG-LSQLYQLRGRIGRSSR------VAYAYFMYQPM-KVL 940

Query: 702 DETTRRREKQLE 713
           +E   +R + ++
Sbjct: 941 NEVAEKRLQAIK 952


>gi|229551616|ref|ZP_04440341.1| transcription-repair coupling factor [Lactobacillus rhamnosus
           LMS2-1]
 gi|229315020|gb|EEN80993.1| transcription-repair coupling factor [Lactobacillus rhamnosus
           LMS2-1]
          Length = 1182

 Score =  177 bits (449), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 82/502 (16%), Positives = 177/502 (35%), Gaps = 70/502 (13%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
              L+ G++GS KT     +++  ++  +++  N+  A +L ++  +      V  F   
Sbjct: 30  GRHLVTGLSGSAKTVFFGALLQQQKKQLLIVENNRFHADELAADLSSLLGDALVYDF--- 86

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS-V 287
                     P  D    + +  + +    R +A   +      I+V+S++    I    
Sbjct: 87  ----------PVEDVLAAEVAVSSPETRNDRINALTFIQSGQPGIIVTSLAGYKRILPAP 136

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
            +++   + + +   ++ + +   LV   Y+R  +    G F + G  I+I+P + +D  
Sbjct: 137 AAWAASELVVDMDSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDIYPLNQDD-P 195

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+ +F  +I+ I  F   T + ++ ++ I I   +  +     L  A   I    K   
Sbjct: 196 IRIELFDTEIDSIRSFDIATQRSLKKLDQIVIAPATDMIASDQVLTDAGARI---GKQAT 252

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
               K       Q +   +    + L+     +++  Y+  L   +       + +Y+  
Sbjct: 253 AYKAKVKDAAAKQAITDGLLTTSQQLQALERPENLALYAPELYPEHHR-----ITDYLAG 307

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS----------CMDNRP-LRFE 516
           D+L+  D+    +   + + +      + L E G  LP             D  P L   
Sbjct: 308 DALVAFDDYSRLLDSDTNLVQDTAEWYSQLQEEGRLLPKTPNPTIQALNQRDRHPRLYLS 367

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            +        + S T             V+Q                  +Q+  +  E +
Sbjct: 368 LFQKGMGQLRLDSLTNVP-------SRNVQQF----------------FSQMPLLKTETD 404

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q   ++  V  K   + L+  L++  I      S V T         L  GK  + 
Sbjct: 405 RWVKQKQTVVFLVSDKNRLDKLSATLHDFEI------SNVVTEP-----NQLLSGKVQL- 452

Query: 637 VGINLLREGLDIPECGLVAILD 658
                L+ G ++P+  LV + +
Sbjct: 453 -TDGSLKNGFELPDLKLVVVTE 473



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I    ++G 
Sbjct: 776 VLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGG 835

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        Y H ++   +   +I D   G +DVLV   +
Sbjct: 836 QVFYLHNRVEDMERTVSQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTI 895

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I +AD  G L     L   IGR++R      + YA  + + +   +
Sbjct: 896 IETGVDMPNANTLIIENADHYG-LSQLYQLRGRIGRSSR------VAYAYFMYQPM-KVL 947

Query: 702 DETTRRREKQLE 713
           +E   +R + ++
Sbjct: 948 NEVAEKRLQAIK 959


>gi|258509516|ref|YP_003172267.1| transcription-repair coupling factor [Lactobacillus rhamnosus GG]
 gi|257149443|emb|CAR88416.1| Transcription-repair coupling factor [Lactobacillus rhamnosus GG]
 gi|259650784|dbj|BAI42946.1| transcription-repair coupling factor [Lactobacillus rhamnosus GG]
          Length = 1175

 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 82/502 (16%), Positives = 176/502 (35%), Gaps = 70/502 (13%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
              L+ G++GS KT     +++  ++  +++  N+  A +L ++  +      V  F   
Sbjct: 23  GRHLVTGLSGSAKTVFFGALLQQQKKQLLIVENNRFHADELAADLSSLLGDALVYDF--- 79

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS-V 287
                     P  D    + +  + +    R +A   +      I+V+S++    I    
Sbjct: 80  ----------PVEDVLAAEVAVSSPETRNDRINALTFIQSGQPGIIVTSLAGYKRILPAP 129

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
            +++   + + +   ++ + +   LV   Y+R  +    G F + G  I+I+P + +D  
Sbjct: 130 AAWAASELVVDMDSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDIYPLNQDD-P 188

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+ +F  +I+ I  F   T + ++ ++ I I   +  +     L  A   I    K   
Sbjct: 189 IRIELFDTEIDSIRSFDIATQRSLKKLDQIAIAPATDMIASDQVLTDAGARI---GKQAT 245

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
               K       Q +   +    + L+     +++  Y+  L   +       + +Y+  
Sbjct: 246 AYKAKVKDAAAKQAITDGLLTTSQQLQALERPENLALYAPELYPEHHR-----ITDYLAS 300

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS----------CMDNRP-LRFE 516
           D+L+  D+    +   + + +      + L   G  LP             D  P L   
Sbjct: 301 DALVAFDDYSRLLDSDTNLVQDTAEWYSQLQAEGRLLPKTPNPTIQALNQRDRHPRLYLS 360

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            +        + S T             V+Q                  +Q+  +  E +
Sbjct: 361 LFQKGMGQLRLDSLTNVP-------SRNVQQF----------------FSQMPLLKTETD 397

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q   ++  V  K   E L+  L++  I      S V T         L  GK  + 
Sbjct: 398 RWVKQKQTVVFLVSDKNRLEKLSATLHDFEI------SNVVTEP-----NQLLSGKVQL- 445

Query: 637 VGINLLREGLDIPECGLVAILD 658
                L+ G ++P+  LV + +
Sbjct: 446 -TDGSLKNGFELPDLKLVVVTE 466



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I    ++G 
Sbjct: 769 VLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGG 828

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        Y H ++   +   +I D   G +DVLV   +
Sbjct: 829 QVFYLHNRVEDMERTVSQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTI 888

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I +AD  G L     L   IGR++R      + YA  + + +   +
Sbjct: 889 IETGVDMPNANTLIIENADHYG-LSQLYQLRGRIGRSSR------VAYAYFMYQPM-KVL 940

Query: 702 DETTRRREKQLE 713
           +E   +R + ++
Sbjct: 941 NEVAEKRLQAIK 952


>gi|325955975|ref|YP_004286585.1| transcription-repair coupling factor [Lactobacillus acidophilus
           30SC]
 gi|325332540|gb|ADZ06448.1| transcription-repair coupling factor [Lactobacillus acidophilus
           30SC]
          Length = 1164

 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 87/508 (17%), Positives = 192/508 (37%), Gaps = 53/508 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + +++     P I++  N+  A  LY E  +    +A  YF   
Sbjct: 24  KNSLITGANAGAFSLLLKQIVSEPNAPLILIEENESKAQNLYGELNSILEDDAAHYF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                P      T T +     ++ +I  +       LL     IVV++   + Y + S 
Sbjct: 81  -----PVDATIATQTAVSSPDELSSRIQSL-----NFLLSGKPGIVVTTPQGLQYKLSSP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             +++   +       E  EL + LV   YK++ +    G F + GD ++I+P   E+  
Sbjct: 131 ADFAKARREFAPEKEYELTELNNWLVGAGYKKEALVARPGEFAIRGDILDIYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ I EF   + +  + +E + + A    V  +  +  A + IK+++    
Sbjct: 190 VRIEFFGDEIDTIKEFDLASQRSQKEIEQVTVAAAQDRVFAKDAIFNAAEKIKKDM---- 245

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                      A+ ++      L+ LE  G   +      YL      E P +L EY+P+
Sbjct: 246 -----VDAPAPAKAVKDHFAVALDNLEDGGLPDNYAFLVDYLI-----EKPSSLLEYLPK 295

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           +  + +D+  +    +  + + +    +   + G  L S  + R    +  +  +   I 
Sbjct: 296 NGEILLDDLPLIKQAVEDVDKQNAAFISDELKTGAML-SHQELRSDFDDVLSKDKHHRIY 354

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
            S        ++  G +  ++ +         E   +  Q+  +  E+    + G  ++L
Sbjct: 355 FSL------FQRSMGRL--RLGQMLNWQTREPEQFFS--QMPLIKSELESYQKSGQTVVL 404

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
                + A  + + + +  + +  +  +           +L  G+  ++V       G  
Sbjct: 405 QADNDKRARQIDQTMVDFGLNLPIVGED-----------ELVEGRAQIMV--GGYASGFS 451

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTI 675
           +P   LV + + +       +   I+T+
Sbjct: 452 LPTVKLVYLTERELFNKRPQRKKRIKTL 479



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      + +  +  T   +          Q+  V  D      ++G 
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPIQTYVMEQIPSVIKDACLREMKRGG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          ++  E L +     R    H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFYLHNRISDIDETVEKLQQLIPNARIASAHGRMSQNQLEDILYRFLNREFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 885 IETGIDMPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 922


>gi|228963154|ref|ZP_04124324.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228796539|gb|EEM43977.1| Transcription-repair-coupling factor [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 1067

 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 89/518 (17%), Positives = 191/518 (36%), Gaps = 41/518 (7%)

Query: 266 LLERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           +    + I+V+ V+ +   +   E + Q  V++ +G  ++   LL +L    Y+R+ +  
Sbjct: 1   MAAGENGIIVAPVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVE 60

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
             G F + G  ++I+P   E++ +R+  F  +++ I  F     +     E++K    + 
Sbjct: 61  APGEFSLRGGILDIYP-LTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVKFGPATE 119

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
           ++  +  L + +++++E L   + +L  +        + + +++++EML+   S + +  
Sbjct: 120 FLFSQEELKSGIQHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQMFK 176

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
           Y            P +L +Y+PED ++ +DE        S +   +     +L   G  +
Sbjct: 177 YLSIFYK-----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTII 231

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                +    FE +   +     V  T     +       +  +   T        ++  
Sbjct: 232 QDL--SFSHAFEGFLHHKKRN-FVYLTLFLRHIAHTHPQNIVNVTCKT--------MQDF 280

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q+  +  EI+   +     ++        + L   L + +I       ++     +E 
Sbjct: 281 HGQMNLLKTEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI-----VEG 330

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARN 681
              L  G+  + V    L  G ++P   LV I + +       K+   Q +    R    
Sbjct: 331 TDILLPGRLQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERIKSY 388

Query: 682 VNSKVILYADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
              KV  Y   +   I   +  ET    E    H    NI  Q   +K+   I+ I    
Sbjct: 389 SELKVGDYVVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQIDQVQ 444

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
               +   D +   L     K     + K +   AD+L
Sbjct: 445 KYVGSEGKDPKVYKLGGNDWKKVKTKVEKSVQDIADDL 482



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 665 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 724

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 725 QIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 784

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 785 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 836

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 837 SEVAEKRLQAIKEFTELG 854


>gi|315037511|ref|YP_004031079.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL
           1112]
 gi|312275644|gb|ADQ58284.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL
           1112]
          Length = 1164

 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 87/508 (17%), Positives = 192/508 (37%), Gaps = 53/508 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + +++     P I++  N+  A  LY E  +    +A  YF   
Sbjct: 24  KNSLITGANAGAFSLLLKQIVSEPNAPLILIEENESKAQNLYGELNSILEDDAAHYF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                P      T T +     ++ +I  +       LL     IVV++   + Y + S 
Sbjct: 81  -----PVDATIATQTAVSSPDELSSRIQSL-----NFLLSGKPGIVVTTPQGLQYKLSSP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             +++   +       E  EL + LV   YK++ +    G F + GD ++I+P   E+  
Sbjct: 131 ADFAKARREFAPEKEYELTELNNWLVGAGYKKEALVARPGEFAIRGDILDIYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ I EF   + +  + +E + + A    V  +  +  A + IK+++    
Sbjct: 190 VRIEFFGDEIDTIKEFDLASQRSQKEIEQVTVAAAQDRVFAKDAIFNAAEKIKKDM---- 245

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                      A+ ++      L+ LE  G   +      YL      E P +L EY+P+
Sbjct: 246 -----VDAPAPAKAVKDHFAVALDNLEDGGLPDNYAFLVDYLI-----EKPSSLLEYLPK 295

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           +  + +D+  +    +  + + +    +   + G  L S  + R    +  +  +   I 
Sbjct: 296 NGEILLDDLPLIKQAVEDVDKQNAAFISDELKTGAML-SHQELRSDFDDVLSKDKHHRIY 354

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
            S        ++  G +  ++ +         E   +  Q+  +  E+    + G  ++L
Sbjct: 355 FSL------FQRSMGRL--RLGQMLNWQTREPEQFFS--QMPLIKSELESYQKSGQTVVL 404

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
                + A  + + + +  + +  +  +           +L  G+  ++V       G  
Sbjct: 405 QADNDKRARQIDQTMADFGLNLPIVGED-----------ELVEGRAQIMV--GGYASGFS 451

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTI 675
           +P   LV + + +       +   I+T+
Sbjct: 452 LPTVKLVYLTERELFNKRPQRKKRIKTL 479



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      + +  +  T   +          Q+  V  D      ++G 
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPIQTYVMEQIPSVIKDACLREMKRGG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          ++  E L +     R    H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFYLHNRISDIDETVEKLQQLIPNARIASAHGRMSQNQLEDILYRFLNREFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 885 IETGIDMPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 922


>gi|15674256|ref|NP_268429.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes M1 GAS]
 gi|71909820|ref|YP_281370.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS5005]
 gi|13621331|gb|AAK33151.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes M1 GAS]
 gi|71852602|gb|AAZ50625.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS5005]
          Length = 1167

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 91/549 (16%), Positives = 197/549 (35%), Gaps = 67/549 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +     G+ +    QL++G++GS KT  +A      Q+  +V+   +    +L S+
Sbjct: 9   QNKKVQSWHSGLTT-LGRQLVMGLSGSSKTLAIASAYLDDQKKIVVVTSTQNEVEKLASD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +      V  F  + D      ++  +   ++K  S  E +  +R+       +    
Sbjct: 68  LSSLLDEELV--FQFFADDVAAAEFIFAS---MDKALSRIETLQFLRNP------KSQGV 116

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++VS       + + + +++  +QL +G+  +   L   L+   Y++    I  G F   
Sbjct: 117 LIVSLSGLRILLPNPDVFTKSQIQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++I+    +++ +R+  FG+DI+ I +F+P T +    +E I I   S  +      
Sbjct: 177 GDILDIYEI-TQELPYRLEFFGDDIDSIRQFHPETQKSFEQLEGIFINPASDLIFEVSDF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++     L+  L   + + +      L           +     + I  +       
Sbjct: 236 QRGIEQ----LEKALQTAQDDKKSYLEDVLAVS--------KNGFKHKDIRKFQSLFY-- 281

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   +L +YIP+ + +F D+    + + +       +      + G  L S ++   
Sbjct: 282 ---EKEWSLLDYIPKGTPIFFDDFQKLVDKNARFDLEIANLLTEDLQQGKAL-SNLNYFT 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             + E    +P T   +   G   ++  Q   + Q             ++    Q   + 
Sbjct: 338 DNYRELRHYKPATFFSNFHKGLGNIKFDQMHQLTQYA-----------MQEFFNQFPLLI 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEI    +    +++ V ++   E L +   +   R+  + S  + + R           
Sbjct: 387 DEIKRYQKNQTTVIVQVESQYAYERLEKSFQDYQFRLPLV-SANQIVSRESQ-------- 437

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
               + I  +  G    +  L  I                + I R AR  N   I  A+ 
Sbjct: 438 ----IVIGAISSGFYFADEKLALI---------TEHEIYHKKIKRRARRSN---ISNAER 481

Query: 693 ITKSIQLAI 701
           +    +LA+
Sbjct: 482 LKDYNELAV 490



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGG 821

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +I          E    +L E + E +I   ++H ++  ++    + D   G +DVLV  
Sbjct: 822 QIFYVYNKVDTIEKKVAELQELVPEASI--GFVHGQMSEIQLENTLIDFINGDYDVLVAT 879

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I +AD  G L +   L   +GR+ R      I YA  + +  ++
Sbjct: 880 TIIETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKV 932

Query: 700 AIDETTRRRE 709
             + + +R E
Sbjct: 933 LTEVSEKRLE 942


>gi|327182807|gb|AEA31254.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL
           1118]
          Length = 1164

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 87/508 (17%), Positives = 192/508 (37%), Gaps = 53/508 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + +++     P I++  N+  A  LY E  +    +A  YF   
Sbjct: 24  KNSLITGANAGAFSLLLKQIVSEPNAPLILIEENESKAQNLYGELNSILEDDAAHYF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                P      T T +     ++ +I  +       LL     IVV++   + Y + S 
Sbjct: 81  -----PVDATIATQTAVSSPDELSSRIQSL-----NFLLSGKPGIVVTTPQGLQYKLSSP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             +++   +       E  EL + LV   YK++ +    G F + GD ++I+P   E+  
Sbjct: 131 ADFAKARREFAPEKEYELTELNNWLVGAGYKKEALVARPGEFAIRGDILDIYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ I EF   + +  + +E + + A    V  +  +  A + IK+++    
Sbjct: 190 VRIEFFGDEIDTIKEFDLASQRSQKEIEQVTVAAAQDRVFAKDAIFNAAEKIKKDM---- 245

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                      A+ ++      L+ LE  G   +      YL      E P +L EY+P+
Sbjct: 246 -----VDAPAPAKAVKDHFAVALDNLEDGGLPDNYAFLVDYLI-----EKPSSLLEYLPK 295

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           +  + +D+  +    +  + + +    +   + G  L S  + R    +  +  +   I 
Sbjct: 296 NGEILLDDLPLIKQAVEDVDKQNAAFISDELKTGAML-SHQELRSDFDDVLSKDKHHRIY 354

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
            S        ++  G +  ++ +         E   +  Q+  +  E+    + G  ++L
Sbjct: 355 FSL------FQRSMGRL--RLGQMLNWQTREPEQFFS--QMPLIKSELESYQKSGQTVVL 404

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
                + A  + + + +  + +  +  +           +L  G+  ++V       G  
Sbjct: 405 QADNDKRARQIDQTMADFGLNLPIVGED-----------ELVEGRAQIMV--GGYASGFS 451

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTI 675
           +P   LV + + +       +   I+T+
Sbjct: 452 LPTVKLVYLTERELFNKRPQRKKRIKTL 479



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      + +  +  T   +          Q+  V  D      ++G 
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPIQTYVMEQIPSVIKDACLREMKRGG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          ++  E L +     R    H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFYLHNRISDIDETVEKLQQLIPNARIASAHGRMSQNQLEDILYRFLNREFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 885 IETGIDMPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 922


>gi|94993402|ref|YP_601500.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS10750]
 gi|94546910|gb|ABF36956.1| Transcription-repair coupling factor [Streptococcus pyogenes
           MGAS10750]
          Length = 1167

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 90/549 (16%), Positives = 196/549 (35%), Gaps = 67/549 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +     G+ +    QL++G++GS K   +A      Q+  +V+   +    +L S+
Sbjct: 9   QNKKVQSWHSGLTT-LGRQLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +      V  F  + D      ++  +   ++K  S  E +  +R+       +    
Sbjct: 68  LSSLLDEELV--FQFFADDVAAAEFIFAS---MDKALSRIETLQFLRNP------KSQGV 116

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++VS       + + + +++  +QL +G+  +   L   L+   Y++    I  G F   
Sbjct: 117 LIVSLSGLRTLLPNPDVFTKSQIQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++I+    +++ +R+  FG+DI+ I +F+P T +    +E I I   S  +      
Sbjct: 177 GDILDIYEI-TQELPYRLEFFGDDIDSIRQFHPETQKSFEQLEGIFINPASDLIFEASDF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++     L+  L   + + +      L           +     + I  +       
Sbjct: 236 QRGIEQ----LEKALQTAQDDKKSYLEDVLAVS--------KNGFKHKDIRKFQSLFY-- 281

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   +L +YIP+ + +F D+    + + +       +      + G  L S ++   
Sbjct: 282 ---EKEWSLLDYIPKGTPIFFDDFQKLVDKNARFDLEIANLLTEDLQQGKAL-SNLNYFA 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             + E    +P T   +   G   ++  Q   + Q             ++    Q   + 
Sbjct: 338 DNYRELRHYKPATFFSNFHKGLGNIKFDQMHQLTQYA-----------MQEFFNQFPLLI 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEI    +    +++ V ++   E L +   +   R+  + S  + + R           
Sbjct: 387 DEIKRYQKNQTTVIVQVESQYAYERLEKSFQDYQFRLPLV-SANQIVSRESQ-------- 437

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
               + I  +  G    +  L  I                + I R AR  N   I  A+ 
Sbjct: 438 ----IVIGAISSGFYFADEKLALI---------TEHEIYHKKIKRRARRSN---ISNAER 481

Query: 693 ITKSIQLAI 701
           +    +LA+
Sbjct: 482 LKDYNELAV 490



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGG 821

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +I          E    +L E + E +I   ++H ++  ++    + D   G +DVLV  
Sbjct: 822 QIFYVYNKVDTIEKKVAELQELVPEASI--GFVHGQMSEIQLENTLIDFINGDYDVLVAT 879

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I +AD  G L +   L   +GR+ R      I YA  + +  ++
Sbjct: 880 TIIETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKI 932

Query: 700 AIDETTRRRE 709
             + + +R E
Sbjct: 933 LTEVSEKRLE 942


>gi|28894918|ref|NP_801268.1| transcription-repair coupling factor [Streptococcus pyogenes SSI-1]
 gi|28810163|dbj|BAC63101.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes SSI-1]
          Length = 1167

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 89/549 (16%), Positives = 196/549 (35%), Gaps = 67/549 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +     G+ +    QL++G++GS K   +A      Q+  +V+   +    +L S+
Sbjct: 9   QNKKVQSWHSGLTT-LGRQLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +      V  F  + D      ++  +   ++K  S  E +  +R+       +    
Sbjct: 68  LSSLLDEELV--FQFFADDVAAAEFIFAS---MDKALSRIETLQFLRNP------KSQGV 116

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++VS       + + + +++  +QL +G+  +   L   L+   Y++    I  G F   
Sbjct: 117 LIVSLSGLRTLLPNPDVFTKSQIQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++I+    +++ +R+  FG+DI+ I +F+P T +    +E + I   S  +      
Sbjct: 177 GDILDIYEI-TQELPYRLEFFGDDIDSIRQFHPETQKSFEQLEGVFINPASDLIFEASDF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++     L+  L   + + +      L           +     + I  +       
Sbjct: 236 QRGIEQ----LEKALQTAQDDKKSYLEDVLAVS--------KNGFKHKDIRKFQSLFY-- 281

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   +L +YIP+ + +F D+    + + +       +      + G  L S ++   
Sbjct: 282 ---EKEWSLLDYIPKGTPIFFDDFQKLVDKNARFDLEIANLLTEDLQQGKAL-SNLNYFA 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             + E    +P T   +   G   ++  Q   + Q             ++    Q   + 
Sbjct: 338 DNYRELRHYKPATFFSNFHKGLGNIKFDQMHQLTQYA-----------MQEFFNQFPLLI 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEI    +    +++ V ++   E L +   +   R+  + S  + + R           
Sbjct: 387 DEIKRYQKNQTTVIVQVESQYAYERLEKSFQDYQFRLPLV-SANQIVSRESQ-------- 437

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
               + I  +  G    +  L  I                + I R AR  N   I  A+ 
Sbjct: 438 ----IVIGAISSGFYFADEKLALI---------TEHEIYHKKIKRRARRSN---ISNAER 481

Query: 693 ITKSIQLAI 701
           +    +LA+
Sbjct: 482 LKDYNELAV 490



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGG 821

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +I          E    +L E + E +I   ++H ++  ++    + D   G +DVLV  
Sbjct: 822 QIFYVYNKVDTIEKKVAELQELVPEASI--GFVHGQMSEIQLENTLIDFINGDYDVLVAT 879

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I +AD  G L +   L   +GR+ R      I YA  + +  ++
Sbjct: 880 TIIETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKV 932

Query: 700 AIDETTRRRE 709
             + + +R E
Sbjct: 933 LTEVSEKRLE 942


>gi|313904443|ref|ZP_07837820.1| transcription-repair coupling factor [Eubacterium cellulosolvens 6]
 gi|313470779|gb|EFR66104.1| transcription-repair coupling factor [Eubacterium cellulosolvens 6]
          Length = 1128

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 92/523 (17%), Positives = 177/523 (33%), Gaps = 109/523 (20%)

Query: 153 QPAA----IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           QP A      +L + I S E    + G   S K   MA  +      A+++A N+  A +
Sbjct: 7   QPLAEVNGYEELKERILSGEGFAEVSGCLDSQK-AHMAAALALEAPAALLVAENERKARE 65

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           +Y +F+ F P                  Y PR D    +       + R R    ++L+E
Sbjct: 66  IYEDFRLFDPE---------------VMYYPRRDLIFYQADISGNLLTRQRMQVIKALME 110

Query: 269 RNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
           +    V++S   C+  +  +    +  ++L  G  +   +L   L    Y+R       G
Sbjct: 111 QKKVTVITSTGGCMDRLLPLRVLEKYTLKLSAGTEIPLSDLAEKLTSMGYERVVQVESAG 170

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            F + GD ++I+ S  E++ WR+  + + ++ I  F P + + + N+E I IY  +    
Sbjct: 171 QFAIRGDIVDIY-SLTEELPWRIEFWDDLVDGIRCFDPESQRSVENLEEIMIYPATEEPG 229

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
                                       + E Q+                      +Y R
Sbjct: 230 FD------------------------RDMPEKQKT---------------------DYLR 244

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
            LT   P        +Y P  ++ F+DE    +     +              G  LP  
Sbjct: 245 SLTNTFP--------DYFPRGTVCFLDEPARLLDNAKAVSDEFIEAMKHRLGEGSILP-- 294

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ---CQGIIVEQIIRPTGLVDPPV----E 560
                   +E   +    ++      ++   +       ++EQ   P  +          
Sbjct: 295 --------QEAERMINEEVL------AYNFSRRCVVALDLMEQHHLPFKVDSRLAVSARS 340

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           + S   Q   +  ++    ++G R++L   ++     L E L    +   +         
Sbjct: 341 VNSYNKQFPLLVKDLTTWKKRGCRVVLICASRTRGTRLAEELRGEGLNAFFT-------- 392

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             +  R+L  G+  ++V    +R G + P    V I ++D  G
Sbjct: 393 -EDEERELMPGE--IMVTRGNVRRGFEYPMQQYVLITESDIFG 432



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 77/179 (43%), Gaps = 12/179 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +  +    L +PP++    +T V     E + + ++   
Sbjct: 731 VLTLTATPIPRTLHMSMIGIRDMSV----LEEPPMDRLPIQTYVMEYDEEMIREALSREL 786

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +  +     +   ++T+ +     +  V Y H ++K  E  +++     G+ DVLV
Sbjct: 787 ARDGQAFVVYNRVKGIAEMTDRIRNLLPDAVVEYAHGKMKETELEQLMYRFINGEIDVLV 846

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
              ++  G+DI     + I DAD+ G L     L   +GR+ RN  + ++   D + K 
Sbjct: 847 ATTIIETGMDISNVNTMVICDADRLG-LSQLYQLRGRVGRSNRNSYAFLMYKKDKMLKE 904


>gi|254430155|ref|ZP_05043858.1| transcription-repair coupling factor [Cyanobium sp. PCC 7001]
 gi|197624608|gb|EDY37167.1| transcription-repair coupling factor [Cyanobium sp. PCC 7001]
          Length = 1189

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 98/513 (19%), Positives = 186/513 (36%), Gaps = 56/513 (10%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q +   ++L+     ++++ L G   + +    + +  A   P +V+ P    A +  + 
Sbjct: 12  QASLTGEVLERSRRGDRLR-LSGAGRAARALISSALAGAAHAPLLVIVPTLEEAGRWAAL 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            +     ++  Y  S    Y  E + P ++    +   ++E +DR    A      RN  
Sbjct: 71  LELMGWPSSQLYPTSEGSPY--EGFDPTSEITWGQLQVLSELLDRSEDGA-----SRNRL 123

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V++   +   +    +     + L+ G SV+ +EL  +L +  Y R       GT+  
Sbjct: 124 AIVATERALQPHLPPPAALEARCLSLRKGQSVDLEELAGTLTQLGYARVPSIDQEGTWSR 183

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD +++FP   E +  R+  FG ++E++ EF P + + +   E +++    +       
Sbjct: 184 RGDIVDVFPVSAE-LPVRLEFFGEELEKLREFDPTSQRSLDATEVVRLTPTGYTPL---- 238

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  I + L+  + E  ++    EAQ          E L   G+ + +    R L G
Sbjct: 239 -------IADALRESMPEGLEQLLSPEAQ----------EQLLEGGTPEGL----RRLMG 277

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD-FHRKATLAEYGFRLPSCMDN 510
               E P +L +Y+P  +++ VDE    +      Y     H      E G  LP+ +  
Sbjct: 278 LAWAE-PASLLDYLPAGTVIAVDERRHCLAHGQQWYEHAVEHHAEVTRELGAALPAVLH- 335

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
                      RP + V++A       +  +    +       L    V           
Sbjct: 336 -----------RPASAVLAAVEAFPGFDLAELHESDSHPNSFDLASRSVPAHP--NAFGK 382

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   I    Q+  R+ L       A  L   L E +   R++ +   T     +I     
Sbjct: 383 LAALIKGFQQERARVWLLSAQPSRAVAL---LEEHDCITRFVPNPADTPAIERLIEQNTP 439

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                     L  EGL +P   LV I D +  G
Sbjct: 440 VALKTRGTAEL--EGLQLPAWKLVLITDREFFG 470



 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 71/195 (36%), Gaps = 17/195 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E V   I    
Sbjct: 769 VLTLSATPIPRTLYMSLSGVREMSLITT----PPPLRRPIKTHLAALDEEAVRSAIRQEL 824

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G +I   V      E++ E L +    +++   H ++   E    +     G+ D+++
Sbjct: 825 DRGGQIFYVVPRVEGIEEVAERLRQMLPGLQLLVAHGQMAEGELESAMVAFNAGEADLML 884

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA + G  +    L   +GR+    ++ +    D      
Sbjct: 885 CTTIVESGLDIPRVNTILIEDAHRFGLAQ-LYQLRGRVGRSGIQAHAWLFYPGDASLSEA 943

Query: 698 QLAIDETTRRREKQL 712
                   R R  Q 
Sbjct: 944 AR-----QRLRAIQE 953



 Score = 39.3 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAMQ--RPAIVMAP 201
            Y P+ DQ  AIA + + +   +   +L+ G  G GKT   +  + +A+   R   ++AP
Sbjct: 616 PYEPTPDQVKAIADVKRDMEQAQPMDRLVCGDVGFGKTEVAIRAIFKAVTAGRQVAMLAP 675

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
             +LA Q +      F    V+  +        E 
Sbjct: 676 TTVLAQQHWRSLSERFAPYPVKVSLLNRFRTAAER 710


>gi|296111607|ref|YP_003621989.1| transcription-repair coupling factor [Leuconostoc kimchii IMSNU
           11154]
 gi|295833139|gb|ADG41020.1| transcription-repair coupling factor [Leuconostoc kimchii IMSNU
           11154]
          Length = 1174

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 102/613 (16%), Positives = 206/613 (33%), Gaps = 73/613 (11%)

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
            QLLLGV GS +  ++A +     R  +V+   +  A QL+S+                 
Sbjct: 24  AQLLLGVNGSARAASIASLYSGRPRQMLVVTDTQAHADQLFSDLSGLMS----------- 72

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS-VE 288
               P    P  ++   + +  +  +   R     +L      I+V+S++ +  +     
Sbjct: 73  ----PVLNFPSEESLATEMAISSPDLRLQRIETLLALRRGEKKIIVTSIAGVERLLPQPV 128

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           S  +  +   +G + +  E+ S+L+   Y    +    G F   G  I+I+P   +D   
Sbjct: 129 SLDEAYLSFTVGQNYDLNEIKSTLMMMGYTPTKLVQGAGEFAQRGAIIDIYPLTSDD-PI 187

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  F  +++++ +F   T +    ++ + I   + ++        A   I+++      
Sbjct: 188 RLDFFDTELDQLKQFDVATQKSTTVLKQVVIQPATDFIVSEAQYQAAKIAIEKDFSQHRT 247

Query: 409 ELEKEGRLLEAQ--RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
            L    +        L Q +      L        +  Y+ Y  G        TL +Y  
Sbjct: 248 TLTGVNKKHATDGFMLTQHV------LNERERGNQLLPYAAYFFGGV-----TTLRDYFT 296

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
           +D+LL VDE              D        E    LP+ +        +W+ L     
Sbjct: 297 KDALLIVDEQTRLKETRLQQLTYDQEWIDKQLETYQLLPNQILR-----ADWSELLSQE- 350

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQVEDVYDEINLAAQQGL 583
               T     L   Q  + +  +R T L    V  R A     Q++ +  ++  A   G 
Sbjct: 351 ----TRAILYLANFQRGLNQ--LRFTNL--EEVITRPANQYYGQLDALKSDLLYAQDSGT 402

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
            ++L +   +  +     L E    +                R ++  +  V+     L 
Sbjct: 403 TVVLLIDDAKRRQTFIASLDEFKTPI-------------IETRQVQSNQVQVM--AGDLA 447

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-------NVNSKVILYADTITKS 696
            G + P+  L  + + +     +      + I  A R       NV   V+     I + 
Sbjct: 448 TGFEWPKLHLTVLTEHELFTQTKRVAPRQRKINNAERLKSYNELNVGDYVVHVNHGIGRY 507

Query: 697 --IQLAIDETTRRREKQLEHNKKHNI-NPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
             +Q    +  ++    + + K   I  P +    I + I       A   N  +   Q 
Sbjct: 508 EGLQTMTSDGGKQDYLSIAYQKNAKIFIPVTQLNLIQKYIGASDAAKAPKLN-QLGGTQW 566

Query: 754 SLSKKKGKAHLKS 766
           + +K++    ++ 
Sbjct: 567 AKTKRQVATKIED 579



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G     +I        P++          V + I     +  
Sbjct: 768 VLTLTATPIPRTLNMAMVGARDLSVIETPPANRYPIQTYVLEADWVIVRNAIEKELSRNG 827

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   + +     R   +H ++   +   I+ D   G +DVLV   +
Sbjct: 828 QVFYLHNRVADIDRVASQIEDLVPSARVAAIHGQMSETQLESILYDFLNGNYDVLVTTTI 887

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G  +    L Q  GR  R+       +    +++     
Sbjct: 888 IETGVDIPNANTLIVENADHMGLSQ----LYQLRGRVGRSTRLAYAYFTYPFSRTPS--- 940

Query: 702 DETTRRRE 709
           +E  +R E
Sbjct: 941 EEAEKRLE 948


>gi|116333178|ref|YP_794705.1| transcription-repair coupling factor [Lactobacillus brevis ATCC
           367]
 gi|116098525|gb|ABJ63674.1| Transcription-repair coupling factor (superfamily II helicase)
           [Lactobacillus brevis ATCC 367]
          Length = 1180

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 92/560 (16%), Positives = 199/560 (35%), Gaps = 66/560 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q A  A + + +   ++ QL+ G+ GS +T  +A ++   QR  + +      A+QL  +
Sbjct: 9   QTAQYATIRQTLGVGQR-QLVTGLNGSAETLFIASLLHEQQRSLVYVTDTLYHASQLVDD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             N    + +  F             P  +    + ++ + +    R  A R+L      
Sbjct: 68  LANLLDDDELFDF-------------PVEELLAAEVATSSPEYRSARIDALRALQSDRPV 114

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           +VV+S+S +   + +  +++     + +GD  + + L   L    Y  Q +    G F V
Sbjct: 115 VVVTSLSGLRRFLPTPANFAAARFTVSVGDEFDLEALQQKLFAMGYAHQKLVAAPGDFAV 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I+I+P    D   R+  F  +++ +  F P T + I N +T+++   + ++     
Sbjct: 175 RGSIIDIYPL-AADYPIRIDFFDTEVDSLRYFDPATQRSIDNGQTVEVLPATDFILTADE 233

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
             T        L+  L     +    +A  L  ++   ++ L+       +  ++ YL  
Sbjct: 234 RATGATA----LRTTLQAQAADLAAEDATTLTNQVQPLIDGLQKGSVDPQLLEFADYLFP 289

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
            +       + +Y+P+D ++   +          +   + +                   
Sbjct: 290 EHHQ-----VLDYLPDDGVVLFGDYVRLQDAERQLLEDEANWATDKL--------AHHQI 336

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV-------EIRSA 564
             +      LRP   +V A       ++   I++    +  G +            ++  
Sbjct: 337 FTQQTFGGELRP---IVRA-------DKHAQIMLALFQKGMGSLRFQAMTNMTTRAMQQF 386

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q+  +  EI+   +Q   ++L V  +     + + L +  I+        K+      
Sbjct: 387 FGQLPVMKTEIDRWHKQQQTVVLLVQDEERLAKIEQTLDDFEIQAVL----TKSANLQPA 442

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RAARN 681
           +  L             L+ G ++PE  LV I +A+    +  K    QT+    R    
Sbjct: 443 LTQL---------VPERLQTGFELPEASLVVITEAEMFQKVTKKRPRRQTMANAERLKSY 493

Query: 682 VNSKVILYADTITKSIQLAI 701
            + K   Y   +   I   I
Sbjct: 494 TDLKPGDYVVHVNHGIGKFI 513



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 78/191 (40%), Gaps = 16/191 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + D I    Q+G 
Sbjct: 770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPIQTYVMEQNAGAIQDGIRREMQRGG 829

Query: 584 RILLTVLTKRMAEDLTEYLYERNI-----RVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++          +D+ + + +  +     RV Y+H ++   +   ++ D   G +DVLV 
Sbjct: 830 QVFYL---HNRVDDIEKTVGQIQVLVPEARVGYIHGKMTEAQLEGVLFDFLRGDYDVLVT 886

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DIP    + + +AD+ G L     L   IGR+ R      + YA    +  +
Sbjct: 887 TTIIETGIDIPNANTLFVENADRMG-LSQLYQLRGRIGRSNR------VAYAYFTYQPNK 939

Query: 699 LAIDETTRRRE 709
           +  + + +R E
Sbjct: 940 VLTEVSEKRLE 950


>gi|302871262|ref|YP_003839898.1| transcription-repair coupling factor [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574121|gb|ADL41912.1| transcription-repair coupling factor [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 1143

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/502 (18%), Positives = 188/502 (37%), Gaps = 58/502 (11%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            +  +L + +  +    ++ GV   GK   +  + E   + A+ +       A+L  E +
Sbjct: 9   ESFKRLEEDVVKKSLPLVVTGVGEMGKALVVKSLCEKFNKKALFIT---TQRAKLEWERR 65

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
                N+V       + +            +    S + +I+RM     +   +  D ++
Sbjct: 66  FMSLFNSVVSLQERENPF-----------VVSFAKSRDSEINRME-QFVKIFEDGFDVLI 113

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +SS +      +++      + L  G  ++ + L+  L+K  Y+R      +G F   G 
Sbjct: 114 LSSQNLFEKYTNLKFGY---IHLTEGLDIQLEILIEKLLKFGYERVKTVEKKGQFSQKGG 170

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++I+P        RV  FG+ I+ I  F   T +    ++++KIY    +       + 
Sbjct: 171 IVDIYPV-ASRYPVRVEFFGDTIDTIRFFDVETQKSFERIDSVKIYKAIEWDL-EEDFSE 228

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
             K +KE+ K   ++L+++GR    + LE+     +E L+      ++E    Y      
Sbjct: 229 GFKRVKEDYKKMKLKLKEDGR----KNLEESFREVVEELQL-----NVERLYPYYY---- 275

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
            +   ++ +   ++ L+FVDE +     +    +      + L E GF LP   +     
Sbjct: 276 -QQFFSVVDIF-DECLVFVDEYNQVYSSLKASEQEIQEMFSDLLEKGFVLPKMAECYFTM 333

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            E    L  + I+ +      ELE    I            +   EI S   Q E + D+
Sbjct: 334 SEVLEKLSSSIILQTFVSVVKELELKDII----------SFNFLREIPSYNGQKEILIDD 383

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +     +G  I +   ++   EDL + L   +I               E     R G + 
Sbjct: 384 LKYYMSKGYTINIFAGSRTSLEDLADALLREDI----------QFSEAEEPEVERTGVYL 433

Query: 635 VLVGINLLREGLDIPECGLVAI 656
           +      + +G+++ +   V +
Sbjct: 434 I---ARSIEKGIEVQDLKWVYL 452



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 69/175 (39%), Gaps = 8/175 (4%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          + + I     +G 
Sbjct: 756 VLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRFPVQTFVLEYNERIIKEAILKEISRGG 815

Query: 584 RILLTVLTKRMAEDLTEYLYER---NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           ++       +  +++   L      ++++   H +++  E  E++ D   G++DVLV   
Sbjct: 816 QVFYLYNRVKDIQEVAAKLQNLVGDSVKIACAHGQMEEEELEEVLIDFIEGRYDVLVCTT 875

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           ++  G+D+P    + + D+D+ G  +    L Q  GR  R+       +     K
Sbjct: 876 IIESGVDMPNVNTLIVEDSDRLGLAQ----LYQLRGRVGRSSRLAYAYFTFRKDK 926


>gi|270308451|ref|YP_003330509.1| transcription-repair coupling factor (superfamily II helicase)
           [Dehalococcoides sp. VS]
 gi|270154343|gb|ACZ62181.1| transcription-repair coupling factor (superfamily II helicase)
           [Dehalococcoides sp. VS]
          Length = 1154

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 96/530 (18%), Positives = 191/530 (36%), Gaps = 67/530 (12%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           +   P  DQ      L + +   E    +L    +G+ F++A V   ++ P +V+     
Sbjct: 10  SGLLPLIDQSPLFDSLFQALDRGEADISVL---DAGRGFSLASVYRRLKCPMLVITSQPE 66

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
            A +L  +   +               YQ               S  N  +++MR +   
Sbjct: 67  RARELLEQIAAYTGEEPGFLPDPSLLPYQ------------RAVSDRNSSLEKMRLAGIL 114

Query: 265 SLLERN---DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
               R+     IV +  + +    S E + Q  +Q+  G  +E ++L+S   +  Y+++ 
Sbjct: 115 GGYIRSGDSRIIVTAVPALLQRYVSPEIFKQSFIQVWAGLEIEPQDLISRFQQLGYRQES 174

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           I  I GT+   G  ++IFP H ED   R+  FGN +E +  F P + +  + V  + I  
Sbjct: 175 IVEIPGTYSHRGGILDIFP-HTEDNPVRLEFFGNTLESLRNFDPKSQRSGKAVNELTISP 233

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S                ++++  RL  L  +    E  R    ++ D+  L      + 
Sbjct: 234 ASELFHLGQLT-------RKDINNRLDILLTDNLNPEFSR---TLSADINHLNEGLKPEY 283

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
            E ++             ++ +Y+P D+L+ +DE          + +     ++    +G
Sbjct: 284 PEFFAPLFN-------TSSILDYLPSDALVVLDEPASIEQAAFHLDKEAEELRSDRLSHG 336

Query: 502 FRLPSCMDNRPLRFEEWNCL---RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
             LPS        + E + +   +   I+ S    S  L+         + R +GL +  
Sbjct: 337 -ELPSVYPRPYFNWAEISAMLKTKKRLIMASFGRESESLKLDFASPDNYVGRLSGLYEKL 395

Query: 559 VEIRSARTQVEDVYDEINLAAQ--QGLRILLTVLT------------------------K 592
            E++    +V  V  +    A+  +   IL  V T                         
Sbjct: 396 PELKGHTGRVVIVSHQAARLAELLKERSILAVVQTDVLTPPPPASLSLVQGILGSGWSLS 455

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
                LT+      ++ R + S+  +  R  ++ D++ G+F V +   + 
Sbjct: 456 DNLHILTDAELFGFVKQRRLPSKRPS-ARKGVVLDIKPGEFVVHIDHGVA 504



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 70/189 (37%), Gaps = 17/189 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQGIIVEQ--IIRPTGLVDPPVEIRSARTQVEDV 571
           E +  LR     + +SATP    L      + +   I  P G   P   + +A    E +
Sbjct: 753 EFFKKLRAQVDVLTLSATPIPRTLHMSMVGVRDMSVIETPPGERLPIKTVVAAFD--ERL 810

Query: 572 YDEINLAAQQGLRILLTVLTKRMA-----EDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
             E  L   +    +  V  + M      E + + + E  I +   H ++   +   ++ 
Sbjct: 811 IREAILREMERNGQVFFVSNRVMGINLLAERIQKLVPEARIGIG--HGQMAEDKLAAVMA 868

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D    + DVLV   ++  G+D+P    + I  AD+ G     T L Q  GR  R+     
Sbjct: 869 DFVRYELDVLVCTTIIESGVDVPNANTLIINRADRFGL----TQLYQLRGRVGRSSQLAY 924

Query: 687 ILYADTITK 695
             +     K
Sbjct: 925 AYFLYDKEK 933


>gi|197116614|ref|YP_002137041.1| transcription-repair coupling factor [Geobacter bemidjiensis Bem]
 gi|197085974|gb|ACH37245.1| transcription-repair coupling factor [Geobacter bemidjiensis Bem]
          Length = 1157

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 93/517 (17%), Positives = 174/517 (33%), Gaps = 56/517 (10%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
           P  +  + + +   +    L GV GS   + +++++     P +V+  ++  A +L  E 
Sbjct: 6   PEYLKSIKEKLAPEKSRLSLAGVDGSAPAYLLSRLMTESGPPLVVITSDQESADELAREL 65

Query: 214 KNF-FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-D 271
           + F   HNAV  F  + D    EA  P  D   E            R +A   L++    
Sbjct: 66  RFFSCSHNAVLPFPGW-DVTPFEAASPHPDLVGE------------RLNALLRLMDGGAR 112

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +VV   + +  +   E+   +   L  G+ +E++ L+  LVK  Y    I   RG+F V
Sbjct: 113 AVVVPLAAALQRVIPRETLGGVCQYLVAGEELERETLVEKLVKLGYSHVPIVEDRGSFSV 172

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++IFP   E    R+  FG+ +E +  F P T + +  ++ + +  +   +     
Sbjct: 173 RGGILDIFPPDQE-RPVRIEFFGDLVETMRLFDPATQRSLEPLDELVLLPSREVILSEGV 231

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           +          LK R   L              R    LE L+       ++        
Sbjct: 232 VKEFTPR----LKRRCDHLGIGAD---------RRRELLEQLQHAIYPPGVDFLQPLFH- 277

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
             PG    TLF+Y    +   + +               F      A     L   +   
Sbjct: 278 --PGLE--TLFDYAGPGATRVLVDPAAIAEAC-----ERFEADLAKAAARAELRDAITCD 328

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-ED 570
           P            T+          LE          +R     D  + +     +V   
Sbjct: 329 PADLYLAPEEFHDTLNAGRRLEFPRLELAGEGGETLRLRCVANSDLKLGVSPEGDRVLAP 388

Query: 571 VYDEINLAAQQGLRILLTV----LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + +++      G R+L+        +R+ E L+ Y    +       ++V          
Sbjct: 389 LTEKMVTWIAAGNRVLVPCHQAGQARRLYELLSHYRLPLDSTQDCF-ADVAARP------ 441

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
               G+ ++L     +  G  + E  LV + + +  G
Sbjct: 442 ---PGRVEIL--TGEISRGFRLEEERLVVVAEEEIFG 473



 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 11/169 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + ++ATP    L      I +  I  T  VD            +++  E  L   +   
Sbjct: 770 ILTLTATPIPRTLYMSLMGIRDLSIIDTPPVDRLAIKTFVSRSSDELIREAVLRELRRGG 829

Query: 585 ILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +  V  +      MAE+L   + E  I V   H ++   E  +++     G+ ++L+  
Sbjct: 830 QVFFVHNRVQTIGAMAEELKRIVPEAKIAVG--HGQMAEKELEQVMLSFMHGETNLLLCT 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+ +     
Sbjct: 888 TIIESGLDIPTANTLIVNRADTFGLSQ----LYQLRGRVGRSKSRAYAY 932



 Score = 42.4 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 4/146 (2%)

Query: 81  QSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITF 140
             +  +  +  R  +        +A A + +    LLK        + +  +        
Sbjct: 552 VGAEGIEPRLDRLGAAGWEKAKAKARAEVQEMAAELLKIHAAREVQQGFKFSPADDMYRA 611

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    +  + DQ  AI Q++  + S R   +L+ G  G GKT   M    ++    +  
Sbjct: 612 FEASFAFEETPDQAQAIDQVIADMESPRPMDRLVCGDVGYGKTEVAMRAAFKSTLDGKQV 671

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAV 222
            ++ P  +LA Q    F +      V
Sbjct: 672 AILVPTTVLAQQHAESFASRLKDYPV 697


>gi|56808860|ref|ZP_00366571.1| COG1197: Transcription-repair coupling factor (superfamily II
           helicase) [Streptococcus pyogenes M49 591]
          Length = 1167

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 90/549 (16%), Positives = 198/549 (36%), Gaps = 67/549 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +     G+ +    QL++G++GS K   +A      Q+  +V+   +    +L S+
Sbjct: 9   QNKKVQSWHSGLTT-LGRQLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +      V  F  + D      ++  +   ++K  S  E +  +R+       +    
Sbjct: 68  LSSLLDEELV--FQFFADDVAAAEFIFAS---MDKALSRIETLQFLRNP------KSQGV 116

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++VS       + + + +++  +QL +G++ +   L   L+   Y++    I  G F   
Sbjct: 117 LIVSLSGLRTLLPNPDVFTKSQIQLTVGENYDSDTLTKQLMTIGYQKVSQVISPGEFSRR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++I+    +++ +R+  FG+DI+ I +F+P T +    +E I I   S  +      
Sbjct: 177 GDILDIYEI-TQELPYRLEFFGDDIDSIRQFHPETQKSFEQLEGIFINPASDLIFEASDF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++     L+  L   + + +      L           +     + I  +       
Sbjct: 236 QRGIEQ----LEKALQTAQDDKKSYLEDVLAVS--------KNGFKHKDIRKFQSLFY-- 281

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   +L +YIP+ + +F D+    + + +       +      + G  L S ++   
Sbjct: 282 ---EKEWSLLDYIPKGTPIFFDDFQKLVDKNARFDLEIANLLTEDLQQGKAL-SNLNYFT 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             + E    +P T   +   G   ++  Q   + Q             ++    Q   + 
Sbjct: 338 DNYRELRHYKPATFFSNFHKGLGNIKFDQMHQLTQYA-----------MQEFFNQFPLLI 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEI    +    +++ V ++   E L +   +   R+  + S  + + R           
Sbjct: 387 DEIKRYQKNQTTVIVQVESQYAYERLEKSFQDYQFRLPLV-SANQIVSRESQ-------- 437

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
               + I  +  G    +  L  I           +    + I R AR  N   I  A+ 
Sbjct: 438 ----IVIGAISSGFYFADEKLALI---------TEREIYHKKIKRRARRSN---ISNAER 481

Query: 693 ITKSIQLAI 701
           +    +LA+
Sbjct: 482 LKDYNELAV 490



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGG 821

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +I          E    +L E + E +I   ++H ++  ++    + D   G +DVLV  
Sbjct: 822 QIFYVYNKVDTIEKKVAELQELVPEASI--GFVHGQMSEIQLENTLIDFINGDYDVLVAT 879

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I +AD  G L +   L   +GR+ R      I YA  + +  ++
Sbjct: 880 TIIETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKI 932

Query: 700 AIDETTRRRE 709
             + + +R E
Sbjct: 933 LTEVSEKRLE 942


>gi|260102336|ref|ZP_05752573.1| transcription-repair coupling factor [Lactobacillus helveticus DSM
           20075]
 gi|260083845|gb|EEW67965.1| transcription-repair coupling factor [Lactobacillus helveticus DSM
           20075]
          Length = 1165

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 84/508 (16%), Positives = 188/508 (37%), Gaps = 53/508 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + +++  ++   I++  N+  A  LY E     P  +V+ F   
Sbjct: 24  KNSLITGANAGAFSLLLKQIVTELKTTLILVEENENKAQNLYGELSAILPDGSVQIF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                P      T T +     ++ +I+     A   LL +   IVV++   + Y +   
Sbjct: 81  -----PVDATIATQTAVSSPDELSNRIE-----ALNFLLSKKSGIVVTTPQGLQYKLSDP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           + ++Q     + G   E  +L   LV   YK++ +    G F + GD ++++P   E+  
Sbjct: 131 QEFAQAKKDFEPGKEYELTDLNKWLVSLGYKKEALVARPGEFAIRGDILDVYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ I EF   T +  + ++ ++I A    V     + TA + I++++    
Sbjct: 190 VRIEFFGDEIDTIKEFDLATQRSQKEIDHVEISAAQDRVFSVEAIKTAAEAIEQDM---- 245

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                       + ++   T  L+ L       +      YL  +     P +L EY+ +
Sbjct: 246 -----GDAPAPDKAVKDHFTIALDALNAGVLPDNYAFLVDYLIKK-----PSSLLEYLDK 295

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           +  + +D+  +    +  + + +    +   + G  LP     R    +     +   I 
Sbjct: 296 NGQILIDDLPLVKQAVETVDKQNTAFISDELKTGAMLPKQTL-RNDFDQVLTKDKHYRIY 354

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
            S    S    +   +   Q   P               Q+  +  E+    + G  ++L
Sbjct: 355 FSLFQRSMGRIRLGQMFNWQTREPAQFFS----------QMPLIKSELESYQKSGQTVVL 404

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
                + A+ + + + +  + +  +  +           ++  GK  ++V       G  
Sbjct: 405 QADNAKRAKQIDQTMVDFGLNLPIVGED-----------EITEGKSQIVVAG--YTSGFS 451

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTI 675
           +P   LV + + +       +   I+T+
Sbjct: 452 LPSVKLVYLTERELFNKRPQRKKRIKTL 479



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      + +  +  T   +          Q+  V  D      Q+  
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPIQTYVMEQIPSVVRDACLREMQRDG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          ++  E L +     R    H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFYLHNRISDIDETVEKLQQLIPNARIASAHGRMSQNQLEDILYRFLNREFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+DIP    + I DAD  G L     L   IGR+AR
Sbjct: 885 IETGIDIPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 922


>gi|328463460|gb|EGF35111.1| transcription-repair coupling factor [Lactobacillus helveticus MTCC
           5463]
          Length = 1055

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 84/508 (16%), Positives = 188/508 (37%), Gaps = 53/508 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + +++  ++   I++  N+  A  LY E     P  +V+ F   
Sbjct: 24  KNSLITGANAGAFSLLLKQIVTELKTTLILVEENENKAQNLYGELSAILPDGSVQIF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                P      T T +     ++ +I+     A   LL +   IVV++   + Y +   
Sbjct: 81  -----PVDATIATQTAVSSPDELSNRIE-----ALNFLLSKKSGIVVTTPQGLQYKLSDP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           + ++Q     + G   E  +L   LV   YK++ +    G F + GD ++++P   E+  
Sbjct: 131 QEFAQAKKDFEPGKEYELTDLNKWLVSLGYKKEALVARPGEFAIRGDILDVYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ I EF   T +  + ++ ++I A    V     + TA + I++++    
Sbjct: 190 VRIEFFGDEIDTIKEFDLATQRSQKEIDHVEISAAQDRVFSVEAIKTAAEAIEQDM---- 245

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                       + ++   T  L+ L       +      YL  +     P +L EY+ +
Sbjct: 246 -----GDAPAPDKAVKDHFTIALDALNAGVLPDNYAFLVDYLIKK-----PSSLLEYLDK 295

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           +  + +D+  +    +  + + +    +   + G  LP     R    +     +   I 
Sbjct: 296 NGQILIDDLPLVKQAVETVDKQNTAFISDELKTGAMLPKQTL-RNDFDQVLTKDKHYRIY 354

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
            S    S    +   +   Q   P               Q+  +  E+    + G  ++L
Sbjct: 355 FSLFQRSMGRIRLGQMFNWQTREPAQFFS----------QMPLIKSELESYQKSGQTVVL 404

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
                + A+ + + + +  + +  +  +           ++  GK  ++V       G  
Sbjct: 405 QADNAKRAKQIDQTMVDFGLNLPIVGED-----------EITEGKSQIVVAG--YTSGFS 451

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTI 675
           +P   LV + + +       +   I+T+
Sbjct: 452 LPSVKLVYLTERELFNKRPQRKKRIKTL 479



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      + +  +  T   +          Q+  V  D      Q+  
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPIQTYVMEQIPSVVRDACLREMQRDG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          ++  E L +     R    H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFYLHNRISDIDETVEKLQQLIPNARIASAHGRMSQNQLEDILYRFLNREFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+DIP    + I DAD  G L     L   IGR+AR
Sbjct: 885 IETGIDIPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 922


>gi|306826404|ref|ZP_07459718.1| transcription-repair coupling factor [Streptococcus pyogenes ATCC
           10782]
 gi|304431399|gb|EFM34394.1| transcription-repair coupling factor [Streptococcus pyogenes ATCC
           10782]
          Length = 1167

 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 92/549 (16%), Positives = 197/549 (35%), Gaps = 67/549 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +     G+ +    QL++G++GS K   +A      Q+  +V+   +    +L S+
Sbjct: 9   QNKKVQSWHSGLTT-LGRQLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +      V  F  + D      ++  +   ++K  S  E +  +R+       +    
Sbjct: 68  LSSLLDEELV--FQFFADDVAAAEFIFAS---MDKALSRIETLQFLRNP------KSQGV 116

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++VS  S    + + + +++  +QL +G+  +   L   L+   Y++    I  G F   
Sbjct: 117 LIVSLSSLRTLLPNPDVFTKSQIQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++I+    +++ +R+  FG+DI+ I +FYP T +    +E I I   S  +      
Sbjct: 177 GDILDIYEI-TQELPYRLEFFGDDIDSIRQFYPETQKSFEQLEGIFINPASDLIFEASDF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++     L+  L   + + +      L           +     + I  +       
Sbjct: 236 QRGIEQ----LEKALQTAQDDKKSYLEDVLAVS--------KNGFKHKDIRKFQSLFY-- 281

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   +L +YIP+ + +F D+    + + +       +      + G  L S ++   
Sbjct: 282 ---EKEWSLLDYIPKGTPIFFDDFQKLVDKNARFDLEIANLLTEDLQQGKAL-SNLNYFA 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             + E    +P T   +   G   ++  Q   + Q             ++    Q   + 
Sbjct: 338 DNYRELRHYKPATFFSNFHKGLGNIKFDQMHQLTQYA-----------MQEFFNQFPLLI 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEI    +    +++ V ++   E L +   +   R+  + S  + + R           
Sbjct: 387 DEIKRYQKNQTTVIVQVESQYAYERLEKSFQDYQFRLPLV-SVNQIVSRESQ-------- 437

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
               + I  +  G    +  L  I                + I R AR  N   I  A+ 
Sbjct: 438 ----IVIGAVSSGFYFADEKLALI---------TEHEIYHKKIKRRARRSN---ISNAER 481

Query: 693 ITKSIQLAI 701
           +    +LA+
Sbjct: 482 LKDYNELAV 490



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 8/185 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGG 821

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +I          E    +L E + E +I   ++H ++  ++    + D   G +DVLV  
Sbjct: 822 QIFYVYNKVDTIEKKVAELQELVPEASI--GFVHGQMSEIQLENTLIDFINGDYDVLVAT 879

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I +AD  G L +   L   +GR+ R   + ++   D I   +  
Sbjct: 880 TIIETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSE 938

Query: 700 AIDET 704
              ET
Sbjct: 939 KRLET 943


>gi|158521716|ref|YP_001529586.1| transcription-repair coupling factor [Desulfococcus oleovorans
           Hxd3]
 gi|158510542|gb|ABW67509.1| transcription-repair coupling factor [Desulfococcus oleovorans
           Hxd3]
          Length = 1174

 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 94/530 (17%), Positives = 185/530 (34%), Gaps = 70/530 (13%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           L+  + +     +  GV      F ++++ + +  P +V+  +   A +   + + F P 
Sbjct: 13  LVDRLETGAGEVVCAGVGKGADAFMVSRIGQTLNVPVLVVTASAREAQRFTEDARFFQPA 72

Query: 220 NA---VEYFVSYY-DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER--NDCI 273
           +A   V  F SY    Y+P AY              + +    R      + E      +
Sbjct: 73  DARAEVALFPSYTVMPYRPVAY--------------HNRTAAERIQLLYGMSEGLAPAVL 118

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V++  + +          +    +  G+S++   L   LV   Y R  I    G F + G
Sbjct: 119 VLAVDALLQKTIPPGDLCEFAQTVSEGESLDPTALAEKLVAGGYTRTAIVEEPGDFSIRG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             +++F    E    R+ +FG+ +E I  F P+T ++ R    I +      V  +  + 
Sbjct: 179 GIVDLFSPFHE-APARIDLFGDTVESIHFFSPVTQRRGRPTSGITLLPARETVLAKDRIG 237

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD-LEMLETTGSCQSIENYSRYLTGR 452
             +  +K+    R  EL           L   ++ D ++ +E     + +E+    +   
Sbjct: 238 RLIAAVKK----RSAEL----------NLPVSVSRDIIDRMEQGTDTEGMESLMPLVY-- 281

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG-FRLPS---CM 508
              E P TLF+Y+P  +LL + +  +   +     R       T  E G + +P     +
Sbjct: 282 ---ETPATLFDYLPGKTLLVMVDPGMIAEKAENHGRLATELYETAREEGRWCVPPDALYL 338

Query: 509 DNRPLRFEEWNC--LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI----- 561
           D + ++ E +    L    + VSATP         G     +       +  V +     
Sbjct: 339 DWQAVQKEAFKKPLLSFPVLPVSATPED-------GDNTPVVETAGVTDNSAVTLMLRTQ 391

Query: 562 -RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
            R   T +  +   I      G   ++    +   + +  +L    +     H  +    
Sbjct: 392 PRDTDTVLTPLLSWIEENRGLGCVSVIACGGRAQVDRMAYFLTSHRVP----HESLDAFS 447

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +    D       V +    L  G      GL  I D +  G +R ++S
Sbjct: 448 SMGRGSD------TVCLVSGQLSAGFRFAAEGLAVITDTEIFGRVRHRSS 491



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 67/194 (34%), Gaps = 12/194 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + ++ATP    L       +  I   T   +    I++  ++ +D      +  +  +G
Sbjct: 782 VLSLTATPIPRTLHMSLS-GMRDISVITTPPEHRKAIKTYISEFDDAIIRTAIRKELERG 840

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            +I            + ++L +    VR   +H  +        +      + D+LV   
Sbjct: 841 GQIYFVHNNIHKIAFIADHLKKLVPEVRLGIVHGRLDQNTLETCMMQFVNREIDMLVCTR 900

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+DIP    + I  AD  G  +      Q  GR  R+              ++   
Sbjct: 901 IIESGIDIPSANTIFINRADMFGLAQIY----QLRGRVGRSDEQAYAYLFIPRESALGK- 955

Query: 701 IDETTRRREKQLEH 714
             +  +R +  +EH
Sbjct: 956 --DARKRLKVLMEH 967


>gi|139472894|ref|YP_001127609.1| transcription-repair coupling factor [Streptococcus pyogenes str.
           Manfredo]
 gi|134271140|emb|CAM29350.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes str. Manfredo]
          Length = 1167

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 92/549 (16%), Positives = 197/549 (35%), Gaps = 67/549 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +     G+ +    QL++G++GS K   +A      Q+  +V+   +    +L S+
Sbjct: 9   QNKKVQSWHSGLTT-LGRQLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +      V  F  + D      ++  +   ++K  S  E +  +R+       +    
Sbjct: 68  LSSLLDEELV--FQFFADDVAAAEFIFAS---MDKALSRIETLQFLRNP------KSQGV 116

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++VS  S    + + + +++  +QL +G+  +   L   L+   Y++    I  G F   
Sbjct: 117 LIVSLSSLRTLLPNPDVFTKSQIQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++I+    +++ +R+  FG+DI+ I +FYP T +    +E I I   S  +      
Sbjct: 177 GDILDIYEI-TQELPYRLEFFGDDIDSIRQFYPETQKSFEQLEGIFINPASDLIFEASDF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++     L+  L   + + +      L           +     + I  +       
Sbjct: 236 QRGIEQ----LEKALQTAQDDKKSYLEDVLAVS--------KNGFKHKDIRKFQSLFY-- 281

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   +L +YIP+ + +F D+    + + +       +      + G  L S ++   
Sbjct: 282 ---EKEWSLLDYIPKGTPIFFDDFQKLVDKNARFDLEIANLLTEDLQQGKAL-SNLNYFA 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             + E    +P T   +   G   ++  Q   + Q             ++    Q   + 
Sbjct: 338 DNYRELRHYKPATFFSNFHKGLGNIKFDQMHQLTQYA-----------MQEFFNQFPLLI 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEI    +    +++ V ++   E L +   +   R+  + S  + + R           
Sbjct: 387 DEIKRYQKNQTTVIVQVESQYAYERLEKSFQDYQFRLPLV-SANQIVSRESQ-------- 437

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
               + I  +  G    +  L  I                + I R AR  N   I  A+ 
Sbjct: 438 ----IVIGAISSGFYFADEKLALI---------TEHEIYHKKIKRRARRSN---ISNAER 481

Query: 693 ITKSIQLAI 701
           +    +LA+
Sbjct: 482 LKDYNELAV 490



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGG 821

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +I          E    +L E + E +I   ++H ++  ++    + D   G +DVLV  
Sbjct: 822 QIFYVYNKVDTIEKKVAELQELVPEASI--GFVHGQMSEIQLENTLIDFINGDYDVLVAT 879

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I +AD  G L +   L   +GR+ R      I YA  + +  ++
Sbjct: 880 TIIETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKI 932

Query: 700 AIDETTRRRE 709
             + + +R E
Sbjct: 933 LTEVSEKRLE 942


>gi|50913352|ref|YP_059324.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS10394]
 gi|50902426|gb|AAT86141.1| Transcription-repair coupling factor [Streptococcus pyogenes
           MGAS10394]
          Length = 1167

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 92/549 (16%), Positives = 197/549 (35%), Gaps = 67/549 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +     G+ +    QL++G++GS K   +A      Q+  +V+   +    +L S+
Sbjct: 9   QNKKVQSWHSGLTT-LGRQLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +      V  F  + D      ++  +   ++K  S  E +  +R+       +    
Sbjct: 68  LSSLLDEELV--FQFFADDVAAAEFIFAS---MDKALSRIETLQFLRNP------KSQGV 116

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++VS  S    + + + +++  +QL +G+  +   L   L+   Y++    I  G F   
Sbjct: 117 LIVSLSSLRTLLPNPDVFTKSQIQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++I+    +++ +R+  FG+DI+ I +FYP T +    +E I I   S  +      
Sbjct: 177 GDILDIYEI-TQELPYRLEFFGDDIDSIRQFYPETQKSFEQLEGIFINPASDLIFEASDF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++     L+  L   + + +      L           +     + I  +       
Sbjct: 236 QRGIEQ----LEKALQTAQDDKKSYLEDVLAVS--------KNGFKHKDIRKFQSLFY-- 281

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   +L +YIP+ + +F D+    + + +       +      + G  L S ++   
Sbjct: 282 ---EKEWSLLDYIPKGTPIFFDDFQKLVDKNARFDLEIANLLTEDLQQGKAL-SNLNYFA 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             + E    +P T   +   G   ++  Q   + Q             ++    Q   + 
Sbjct: 338 DNYRELRHYKPATFFSNFHKGLGNIKFDQMHQLTQYA-----------MQEFFNQFPLLI 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEI    +    +++ V ++   E L +   +   R+  + S  + + R           
Sbjct: 387 DEIKRYQKNQTTVIVQVESQYAYERLEKSFQDYQFRLPLV-SANQIVSRESQ-------- 437

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
               + I  +  G    +  L  I                + I R AR  N   I  A+ 
Sbjct: 438 ----IVIGAISSGFYFADEKLALI---------TEHEIYHKKIKRRARRSN---ISNAER 481

Query: 693 ITKSIQLAI 701
           +    +LA+
Sbjct: 482 LKDYNELAV 490



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGG 821

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +I          E    +L E + E +I   ++H ++  ++    + D   G +DVLV  
Sbjct: 822 QIFYVYNKVDTIEKKVAELQELVPEASI--GFVHGQMSEIQLENTLIDFINGDYDVLVAT 879

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I +AD  G L +   L   +GR+ R      I YA  + +  ++
Sbjct: 880 TIIETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKI 932

Query: 700 AIDETTRRRE 709
             + + +R E
Sbjct: 933 LTEVSEKRLE 942


>gi|73748965|ref|YP_308204.1| transcription-repair coupling factor [Dehalococcoides sp. CBDB1]
 gi|73660681|emb|CAI83288.1| transcription-repair coupling factor [Dehalococcoides sp. CBDB1]
          Length = 1148

 Score =  175 bits (443), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 165/465 (35%), Gaps = 56/465 (12%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P  DQ  +   L + +   E    +L    +G+ F++A V   ++ P +V+      A +
Sbjct: 8   PLIDQSPSFNSLFESLDRGEADISVL---DAGRGFSLAAVYRKLKCPMLVITSQPERARE 64

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L  +   +               YQ               S  N  +++MR +       
Sbjct: 65  LLEQIAAYSGEEPGFLPDPSLLPYQ------------RAVSDRNSSLEKMRLAGILGGFI 112

Query: 269 RN---DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           R+     IV +  + +    S + + Q  VQ+  G   E + L+    +  Y+++ I  +
Sbjct: 113 RSGDARIIVTAVPALLQRYISPKVFEQSFVQVWTGLETEPQNLICRFQQLGYRQESIVEM 172

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
            GT+   G  ++IFP H ED   R+  FGN +E +  F P + +  + V  + I   S  
Sbjct: 173 PGTYSHRGGILDIFP-HTEDNPVRLEFFGNTLESLRNFDPQSQRSGKQVNELTISPASEI 231

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
                      +  ++ELK +L  L  +    E  R    ++ D+  L+     +  E +
Sbjct: 232 FHLG-------QLPRQELKNKLDALLTDNLNPEFSR---TLSADINHLQEGLKPEYPEFF 281

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505
           +             ++ +Y+P D+L+ +DE          +       ++     G  LP
Sbjct: 282 APLFN-------TSSILDYLPADALVVLDEPASIEQAAFHLDNEAEELRSDRLSQG-ELP 333

Query: 506 SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS-A 564
           S                      S    S  L+  + +I+    R +  +          
Sbjct: 334 SVYPRP---------------YFSWAEISEMLKTKKRLIMASFGRESESLKLEFASPDNY 378

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
             ++  +Y+++        R+++       A  LTE L E  I  
Sbjct: 379 VGRLTSLYEKLPELKGHAGRVVIVS---HQAARLTELLAEEGIST 420



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 17/191 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           E +  LR     + +SATP    L         +  I  P G   P   + +A    E +
Sbjct: 747 EFFKKLRAQVDVLTLSATPIPRTLHMSMVGVRDMSIIETPPGERLPIKTVVAAFD--ERL 804

Query: 572 YDEINLAAQQGLRILLTVLTKRMA-----EDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
             E  L   +    +  V  + M      E + + + E  I +   H ++   +   ++ 
Sbjct: 805 IREAILREMERNGQVFFVNNRVMGINLLAERIQQLVPEARIGIG--HGQMAEEKLAAVMA 862

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D    + DVLV   ++  G+D+P    + I  AD+ G     T L Q  GR  R+     
Sbjct: 863 DFVRHELDVLVCTTIIESGVDVPNANTLIINRADRFGL----TQLYQLRGRVGRSSQLAY 918

Query: 687 ILYADTITKSI 697
             +     K +
Sbjct: 919 AYFLYEKEKRL 929


>gi|318041677|ref|ZP_07973633.1| transcription-repair coupling factor [Synechococcus sp. CB0101]
          Length = 1185

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 89/491 (18%), Positives = 177/491 (36%), Gaps = 57/491 (11%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
            G     +    + +  A + P +V+ P    A +  +  +     +A  Y  S    Y+
Sbjct: 32  SGAGRGARALVSSALATAAEAPLLVVVPTLEEAGRWAALLELMGWSSAQLYPTSEGSPYE 91

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
           P  + P ++    +   ++E +D  R ++          IV +  +    +    +    
Sbjct: 92  P--FDPTSEITWGQLQVLSELLDEERAASM--------AIVATERALQPHLPPPAALKAQ 141

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            + L+ GD+V+ +EL  +L +  Y+R       G++   GD +++FP   E +  R+  F
Sbjct: 142 CLSLRKGDTVDLEELGETLTRLGYERVTSIEQEGSWSRRGDIVDVFPVSAE-LPVRLEFF 200

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
           G ++E++ EF P + + +  +E +++  + +              +++ +   L +L   
Sbjct: 201 GEELEKLREFDPASQRSLDPIEVVRLTPSGYGPLIAD-------ALRDGMPDGLDQLLSP 253

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
             L              E L   G+ + +    R L G    E P +L  Y+P ++L+ V
Sbjct: 254 EAL--------------EQLLEGGTPEGM----RRLMGLAWSE-PASLLSYLPANTLIAV 294

Query: 474 DESHVTIPQISGMYRG-DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           DE    +      +   + H     AE G  LP+ +   P +             +S+T 
Sbjct: 295 DERRHCLAHGQQWFDHANEHHAEVCAELGVELPAVLHRTPEQ------------ALSSTE 342

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
                +  +    +       L   PV       Q   + + I    ++  R+ L     
Sbjct: 343 TFAGFDLAELHESDNHPNSFDLASRPVPAYP--NQFGKLAELIKGLQREKTRVWLLSAQP 400

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
             A  L   L E +   R++ +         +I               L  EGL +P   
Sbjct: 401 SRAVAL---LEEHDCITRFVPNSGDQASIERLIEQNTPVALKTKGTAEL--EGLQLPAWK 455

Query: 653 LVAILDADKEG 663
           L  I D +  G
Sbjct: 456 LALITDREFFG 466



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 70/195 (35%), Gaps = 17/195 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E V   I    
Sbjct: 765 VLTLSATPIPRTLYMSLSGVREMSLITT----PPPLRRPIKTHLAALDEEAVRSAIRQEL 820

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G +I   V      ED+ E L      +R +  H ++   E    +     G+ D+++
Sbjct: 821 DRGGQIFYVVPRVEGIEDVAEGLRLMVPGLRLLVAHGQMAEGELESAMVAFNAGEADLML 880

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA K G  +    L   +GR+    ++ +    D      
Sbjct: 881 CTTIVESGLDIPRVNTILIEDAHKFGLAQ-LYQLRGRVGRSGIQAHAWLFYPGDASLSEA 939

Query: 698 QLAIDETTRRREKQL 712
                   R R  Q 
Sbjct: 940 AR-----QRLRAIQE 949


>gi|329117227|ref|ZP_08245944.1| transcription-repair coupling factor [Streptococcus parauberis NCFD
           2020]
 gi|326907632|gb|EGE54546.1| transcription-repair coupling factor [Streptococcus parauberis NCFD
           2020]
          Length = 1167

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 87/564 (15%), Positives = 203/564 (35%), Gaps = 74/564 (13%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +   ++ +          AI     G  S    QL++G++GS K   +A          +
Sbjct: 1   MNILELVSK-------NKAIQSWFSGTRS-LGRQLVMGLSGSSKALAIAANFIDQPEKIV 52

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++  ++  + +L S+         +  F S  D    E      D  I +  +IN  +++
Sbjct: 53  IVTASQNESEKLSSDLAALLGEENIFQFFSD-DAAAAEFVFSSLDRAISRIEAINFLVNQ 111

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
                     E++  +V + +     + + + Y    +  ++G      +L+  L    Y
Sbjct: 112 ----------EQSGILVTNVIGLRTLLPNPKVYQHSQLTFEVGMEYSLAQLVKQLTNIGY 161

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           ++    I  G F   GD ++I+    E+  +R+  FG++++ I +F     + I   E I
Sbjct: 162 QKVSQVINPGEFSRRGDILDIYEI-TEENPYRIEFFGDEVDGIRQFDSENQKSILQKELI 220

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            I   S  +         ++ ++  +K+   E +                Y  +++  + 
Sbjct: 221 TIIPASDVILEEKDYARGIEKLEAAIKLVNEETKS---------------YLHDLISVSK 265

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
                ++  ++L+     E   TL +YIP+ + LF D+    + + +       +     
Sbjct: 266 DGYRHKDLRQFLSVFYEKE--WTLLDYIPKGTPLFFDDFQKILDKNAKFDLEVANLLTDH 323

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
            + G  +PS ++     + ++   +P T   +   G   ++  +   + Q          
Sbjct: 324 LQQGKAIPS-LNYFADNYRDFRNYKPATFFSNFHKGLGNIKFDKLHQLTQYA-------- 374

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              ++    Q   + DEI    +    +L+ V +++  E L + L + +  +  +     
Sbjct: 375 ---MQEFYNQFPLLVDEIKRYQKAQATVLVQVESQQAYEKLLKNLEDYDFTLPLVD---- 427

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
                  I  +   +  +++    +  G             AD++  L ++  +     R
Sbjct: 428 -------INAIETKQVQMVI--GQISSGFYF----------ADEKIALITEHEIYHK--R 466

Query: 678 AARNVNSKVILYADTITKSIQLAI 701
             R V    I  A+ +    +LAI
Sbjct: 467 IKRRVRKSNISNAERLKDYNELAI 490



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     T    V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVMETNPGIVREAIIREMDRGG 821

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +     L E        ++H ++  ++    + D   G +DVLV   +
Sbjct: 822 QVFYVYNKVDTIDKKVAQLQELVPEATIGFVHGQMSEIQLENTLIDFISGDYDVLVATTI 881

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + + +AD  G L +   L   +GR+ R      I YA  + +  ++  
Sbjct: 882 IETGVDISNVNTLFVENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKVLS 934

Query: 702 DETTRRRE 709
           + + +R E
Sbjct: 935 EISEKRLE 942


>gi|227903169|ref|ZP_04020974.1| transcriptional repair coupling factor [Lactobacillus acidophilus
           ATCC 4796]
 gi|227868974|gb|EEJ76395.1| transcriptional repair coupling factor [Lactobacillus acidophilus
           ATCC 4796]
          Length = 1165

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 82/508 (16%), Positives = 187/508 (36%), Gaps = 53/508 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + ++I  +  P I++  N+  A  LY E         V+ F   
Sbjct: 24  KNSLITGANAGAFSLLLKQIISKLNEPLILVEENENKAQNLYGELSAILDSEQVQIFSLD 83

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                       T T +     ++      R  A   LL +   IV+++   + Y + + 
Sbjct: 84  ATI--------ATQTAVSSPDELSS-----RIQALSFLLSKKAGIVITTPQGLQYKLSNP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             ++Q           E  EL + LV   Y+++ +    G F + GD ++I+P   E+  
Sbjct: 131 TDFAQAKRVFIPEKEYELTELNNWLVHSGYQKEALVAKPGEFAIRGDILDIYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ + EF   T +  + ++ ++I A    V     +  A + I++++    
Sbjct: 190 VRIEFFGDEIDTVKEFNLATQRSTQEIDLVEITAAQDRVFSSDAIKKAAEKIRKDMAD-- 247

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                       + ++   T  L+ L+T G  Q+      YL      E P +L +Y+  
Sbjct: 248 -------APAPEKAVKDHFTVALDNLDTGGLPQNYSFLVDYLI-----EKPSSLLDYLAP 295

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           +  + +D+  +    +  +   +    +   + G  LP     R    +  +  +   I 
Sbjct: 296 NGQILIDDFPLIKQSVETVDEQNAAFISDELKTGAMLPGQKL-RADFDKVLSQDKHHRIY 354

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
            S        ++  G +  ++ +         E   +  Q+  +  E+    + G  ++L
Sbjct: 355 FSL------FQRSMGRL--RLGQMLNWQTREPEQFFS--QMPLIKSELESYKKSGQTVIL 404

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
                + A  + + + +  + +  +  +           ++  G+  ++V       G  
Sbjct: 405 QADNNKRARQIDQTMVDFGLSLPIVGED-----------EIIEGQCQIVVAG--YTSGFT 451

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTI 675
           +P   LV + + +       +   I+T+
Sbjct: 452 LPTVKLVYLTERELFNKRPQRKKRIKTL 479



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL- 583
            + ++ATP    L      + +  +  T   +          Q+  V  +  L   Q   
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPIQTYVMEQIPSVVKDACLREMQRYG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          ++  E L +     R    H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFYLHNRISDIDETVEKLQQLIPNARIASAHGRMSQNQLEDILYRFLNREFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 885 IETGIDMPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 922


>gi|94987637|ref|YP_595738.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS9429]
 gi|94991503|ref|YP_599602.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS2096]
 gi|94541145|gb|ABF31194.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS9429]
 gi|94545011|gb|ABF35058.1| Transcription-repair coupling factor [Streptococcus pyogenes
           MGAS2096]
          Length = 1167

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 89/549 (16%), Positives = 197/549 (35%), Gaps = 67/549 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +     G+ +    QL++G++GS K   +A      Q+  +V+   +    +L S+
Sbjct: 9   QNKKVQSWHSGLTT-LGRQLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +      V  F  + D      ++  +   ++K  S  E +  +R+       +    
Sbjct: 68  LSSLLDEELV--FQFFADDVAAAEFIFAS---MDKALSRIETLQFLRNP------KSQGV 116

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++VS       + + + +++  +QL +G+  +   L   L+   Y++    I  G F   
Sbjct: 117 LIVSLSGLRTLLPNPDVFTKSQIQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++I+    +++ +R+  FG+DI+ I +F+P T +    +E I I   S  +      
Sbjct: 177 GDILDIYEI-TQELPYRLEFFGDDIDSIRQFHPETQKSFEQLEGIFINPASDLIFEASDF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++     L+  L   + + +      L           +     + I  +       
Sbjct: 236 QRGIEQ----LEKALQTAQDDKKSYLEDVLAVS--------KNGFKHKDIRKFQSLFY-- 281

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   +L +YIP+ + +F D+    + + +       +      + G  L S ++   
Sbjct: 282 ---EKEWSLLDYIPKGTPIFFDDFQKLVDKNARFDLEIANLLTEDLQQGKAL-SNLNYFT 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             + E    +P T   +   G   ++  Q   + Q             ++    Q   + 
Sbjct: 338 DNYRELRHYKPATFFSNFHKGLGNIKFDQMHQLTQYA-----------MQEFFNQFPLLI 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEI    +    +++ V ++   + L +   +   R+  + S  + + R           
Sbjct: 387 DEIKRYQKNQTTVIVQVESQYAYKRLEKSFQDYQFRLPLV-SANQIVSRESQ-------- 437

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
               + I  +  G    +  L  I           +    + I R AR  N   I  A+ 
Sbjct: 438 ----IVIGAISSGFYFADEKLALI---------TEREIYHKKIKRRARRSN---ISNAER 481

Query: 693 ITKSIQLAI 701
           +    +LA+
Sbjct: 482 LKDYNELAV 490



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGG 821

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +I          E    +L E + E +I   ++H ++  ++    + D   G +DVLV  
Sbjct: 822 QIFYVYNKVDTIEKKVSELQELVPEASI--GFVHGQMSEIQLENTLIDFINGDYDVLVAT 879

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I +AD  G L +   L   +GR+ R      I YA  + +  ++
Sbjct: 880 TIIETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKV 932

Query: 700 AIDETTRRRE 709
             + + +R E
Sbjct: 933 LTEVSEKRLE 942


>gi|58336612|ref|YP_193197.1| transcriptional repair coupling factor [Lactobacillus acidophilus
           NCFM]
 gi|58253929|gb|AAV42166.1| transcriptional repair coupling factor [Lactobacillus acidophilus
           NCFM]
          Length = 1165

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 82/508 (16%), Positives = 187/508 (36%), Gaps = 53/508 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + ++I  +  P I++  N+  A  LY E         V+ F   
Sbjct: 24  KNSLITGANAGAFSLLLKQIISKLNEPLILVEENENKAQNLYGELSAILDSEQVQIFSLD 83

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                       T T +     ++      R  A   LL +   IV+++   + Y + + 
Sbjct: 84  ATI--------ATQTAVSSPDELSS-----RIQALSFLLSKKAGIVITTPQGLQYKLSNP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             ++Q           E  EL + LV   Y+++ +    G F + GD ++I+P   E+  
Sbjct: 131 TDFAQAKRVFIPEKEYELTELNNWLVHSGYQKEALVAKPGEFAIRGDILDIYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ + EF   T +  + ++ ++I A    V     +  A + I++++    
Sbjct: 190 VRIEFFGDEIDTVKEFNLATQRSTQEIDLVEITAAQDRVFSSDAIKKAAEKIRKDMAD-- 247

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                       + ++   T  L+ L+T G  Q+      YL      E P +L +Y+  
Sbjct: 248 -------APAPEKAVKDHFTVALDNLDTGGLPQNYSFLVDYLI-----EKPSSLLDYLAP 295

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           +  + +D+  +    +  +   +    +   + G  LP     R    +  +  +   I 
Sbjct: 296 NGQILIDDFPLIKQSVETVDEQNAAFISDELKTGAMLPGQKL-RADFDKVLSQDKHHRIY 354

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
            S        ++  G +  ++ +         E   +  Q+  +  E+    + G  ++L
Sbjct: 355 FSL------FQRSMGRL--RLGQMLNWQTREPEQFFS--QMPLIKSELESYKKSGQTVIL 404

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
                + A  + + + +  + +  +  +           ++  G+  ++V       G  
Sbjct: 405 QADNNKRARQIDQTMVDFGLSLPIVGED-----------EIIEGQCQIVVAG--YTSGFT 451

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTI 675
           +P   LV + + +       +   I+T+
Sbjct: 452 LPTVKLVYLTERELFNKRPQRKKRIKTL 479



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      + +  +  T   +          Q+  V  D      Q+  
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPIQTYVMEQIPSVVKDACLREMQRDG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          ++  E L +     R    H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFYLHNRISDIDETVEKLQQLIPNARIASAHGRMSQNQLEDILYRFLNREFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 885 IETGIDMPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 922


>gi|290889683|ref|ZP_06552772.1| hypothetical protein AWRIB429_0162 [Oenococcus oeni AWRIB429]
 gi|290480680|gb|EFD89315.1| hypothetical protein AWRIB429_0162 [Oenococcus oeni AWRIB429]
          Length = 1188

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 86/527 (16%), Positives = 196/527 (37%), Gaps = 52/527 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI-----EAMQRPAIVMAPNKILAAQLYS 211
           I +++     +   QL+ GV  + K    A V      E   +  +++   +  A QL S
Sbjct: 15  IEKIVSNQADQTSTQLISGVNDTPKAALAAGVFVRLKAEKNSKKILLLTDTQFRADQLTS 74

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           + +       V               +   ++   + +  +   D  R  A R+LL + +
Sbjct: 75  DLEALLEDENVF-------------EMQSEESLATETAVASRDADLSRVLALRALLSKEN 121

Query: 272 CIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            IVV  +S +       E + Q ++  KI +S  Q++L   L++  Y +Q +    G F 
Sbjct: 122 SIVVVPLSGLSRRYPDPEFFQQAVLDFKIANSYPQEQLAKKLIEMGYNKQTLVANPGEFS 181

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V G+ ++I+P + ++   R+  F +++E +  F   + + +  ++   +   S ++ PR 
Sbjct: 182 VRGEIVDIYPINFDE-PIRLDFFDDELESMRTFDADSQKSLNKIKQASVSPVSDFLLPRA 240

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
             +  +K +++     L +L    +  E ++L +     LE  +       +  +S +  
Sbjct: 241 EFSDGLKQLEQAFVDYLNKL----KGAEKKKLTEFFNPLLEAAKHFSYGHELLPFSEFFL 296

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC--- 507
                    ++FEY+  + L+ +D+      Q +   + +             LP     
Sbjct: 297 KH-------SIFEYLQSEDLILIDDFARINDQTNIQEKKNAEWITDRLREFKLLPDLKVK 349

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +D   L  ++        I     P  +     +G+        T L+     ++    Q
Sbjct: 350 IDGINL-IKKSQQKLSKKIQKFVNPKIYLSNLTRGLAGITFTSRTQLITRQ--MQQYFGQ 406

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +  +  ++    ++   +LL    +     L   L++  +                I  D
Sbjct: 407 MPALKLDLESYRKRDFTVLLQASNRERLLSLQRTLHDFGMN-------------FAITDD 453

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +  G   + +G   L  G ++PE  +V + + +    ++ +    QT
Sbjct: 454 ILTGTAQLQIGS--LSHGFELPEEKIVVMTETELFAKVKKRVPRHQT 498



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G     ++        P++          + D I     +G 
Sbjct: 786 VLTLTATPIPRTLNMALVGARDLSVLETPPANRFPIQTYVLEENWPVIADAIEKELSRGG 845

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +        +  E     +     +  V Y+H ++   +  +++ D   G +DVLV   +
Sbjct: 846 QTFFLHNRVQDIERTVGEIQRIVPDANVGYIHGQMNETQLEDVLMDFLNGIYDVLVTTTI 905

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+DIP    + + ++++ G L     L   IGR+ R
Sbjct: 906 IETGVDIPNANTLIVENSERFG-LSQLYQLRGRIGRSNR 943


>gi|116490296|ref|YP_809840.1| transcription-repair coupling factor [Oenococcus oeni PSU-1]
 gi|116091021|gb|ABJ56175.1| transcription-repair coupling factor [Oenococcus oeni PSU-1]
          Length = 1188

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 86/527 (16%), Positives = 196/527 (37%), Gaps = 52/527 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI-----EAMQRPAIVMAPNKILAAQLYS 211
           I +++     +   QL+ GV  + K    A V      E   +  +++   +  A QL S
Sbjct: 15  IEKIVSNQADQTSTQLISGVNDTPKAALAAGVFVRLKAEKNSKKILLLTDTQFRADQLTS 74

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           + +       V               +   ++   + +  +   D  R  A R+LL + +
Sbjct: 75  DLEALLEDENVF-------------EMQSEESLATETAVASRDADLSRVLALRALLSKEN 121

Query: 272 CIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            IVV  +S +       E + Q ++  KI +S  Q++L   L++  Y +Q +    G F 
Sbjct: 122 SIVVVPLSGLSRRYPDPEFFQQAVLDFKIANSYPQEQLAKKLIEMGYNKQTLVANPGEFS 181

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V G+ ++I+P + ++   R+  F +++E +  F   + + +  ++   +   S ++ PR 
Sbjct: 182 VRGEIVDIYPINFDE-PIRLDFFDDELESMRTFDADSQKSLNKIKQASVSPVSDFLLPRA 240

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
             +  +K +++     L +L    +  E ++L +     LE  +       +  +S +  
Sbjct: 241 EFSDGLKQLEQAFVDYLNKL----KGAEKKKLTEFFNPLLEAAKHFSYGHELLPFSEFFL 296

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC--- 507
                    ++FEY+  + L+ +D+      Q +   + +             LP     
Sbjct: 297 KH-------SIFEYLQSEDLILIDDFARINDQTNIQEKKNAEWITDRLREFKLLPDLKVK 349

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +D   L  ++        I     P  +     +G+        T L+     ++    Q
Sbjct: 350 IDGINL-IKKSQQKLSKKIQKFVNPKIYLSNLTRGLAGITFTSRTQLITRQ--MQQYFGQ 406

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +  +  ++    ++   +LL    +     L   L++  +                I  D
Sbjct: 407 MPALKLDLESYRKRDFTVLLQASNRERLLSLQRTLHDFGMN-------------FAITDD 453

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +  G   + +G   L  G ++PE  +V + + +    ++ +    QT
Sbjct: 454 ILTGTAQLQIGS--LSHGFELPEEKIVVMTETELFAKVKKRVPRHQT 498



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G     ++        P++          + D I     +G 
Sbjct: 786 VLTLTATPIPRTLNMALVGARDLSVLETPPANRFPIQTYVLEENWPVIADAIEKELSRGG 845

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +        +  E     +     +  V Y+H  +   +  +++ D   G +DVLV   +
Sbjct: 846 QTFFLHNRVQDIERTVGEIQRIVPDANVGYIHGRMNETQLEDVLMDFLNGIYDVLVTTTI 905

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+DIP    + + ++++ G L     L   IGR+ R
Sbjct: 906 IETGVDIPNANTLIVENSERFG-LSQLYQLRGRIGRSNR 943


>gi|160947369|ref|ZP_02094536.1| hypothetical protein PEPMIC_01303 [Parvimonas micra ATCC 33270]
 gi|158446503|gb|EDP23498.1| hypothetical protein PEPMIC_01303 [Parvimonas micra ATCC 33270]
          Length = 1168

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 81/508 (15%), Positives = 187/508 (36%), Gaps = 46/508 (9%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ-RPAIVMAPNKILAAQLYSEFKNFF 217
            ++ G+ S        G+        +  +   +  +  +++  N+  A +L  E K+  
Sbjct: 16  DMISGLKSNNVPIYCNGLIKESLFHLIYSIFNDLPDKNLVLLVENENRANELCDELKSLV 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
               V Y              P  +      +S+   ++ +R      LL +   I++++
Sbjct: 76  GDKVVVY--------------PNFEIRFHNINSLETNLENIRIEIMNRLLSKEKFIIITT 121

Query: 278 VSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
            S +   I + + +    + +     V  KEL  +L+K  Y R D    +G F + G   
Sbjct: 122 ASALSKKISTPKFFKSHYIYIDENLEVNLKELTENLIKMHYDRVDFVEAKGQFSIRGSIF 181

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IFP + ++   R+ +FG+DI+ I  F   + + +  +  ++I      V  +  +   +
Sbjct: 182 DIFPVNFKN-PIRIELFGDDIDSIRIFDINSQRSVEKLNKVEIIPAKEMVLSKSDVENIL 240

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
             + ++++  L +L+  G+ +E     ++       L+      +++  S Y+   +   
Sbjct: 241 NGLNKDIEK-LQKLKLFGKDIEKS--TEKFYQIYNDLKINYHISNMDLISPYIRKGSY-- 295

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TL +Y+ +DS++  ++      +   +            E    L S  D       
Sbjct: 296 --STLLDYLAQDSIICTEDILKIYDKNLEIENLFHENVVFSIENAEILDSHKD------- 346

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-VEIRSARTQVEDVYDEI 575
               L P   ++        +   Q +   +II P  +++   +E      + + ++  +
Sbjct: 347 ---ILIPFEHILRRIKDFSIINFTQLLKRTKIINPKSIINLKTIEAEIFNRKFDLLFQNL 403

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               Q+G +I++   +   A +L E LY  NI              I    +  L    +
Sbjct: 404 KSKLQRGYKIVIFAGSLEKANNLKEILYAENINSN-----------IFEGLEFELKSSIL 452

Query: 636 LVGINLLREGLDIPECGLVAILDADKEG 663
            +    L  G + P   ++ +   +  G
Sbjct: 453 GISTLNLESGFEYPIQKVLFLTHKEIYG 480



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 74/451 (16%), Positives = 140/451 (31%), Gaps = 86/451 (19%)

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           +  +GS +         K+ D +        LV+   KR  I   RG F           
Sbjct: 568 LNKLGSNDWIKTKTRAKKVLDEIAID-----LVQLYAKRDKI---RG-F----------- 607

Query: 341 SHLEDVAWRVSMFGNDIE-----EISEFYPLTGQKIRNVETIKIYANSH-----YVTPRP 390
           +  ED  W+     + I      ++        +  +++E  K           Y     
Sbjct: 608 AFSEDTTWQKEFEDSFIYEETYSQLRAIN----EIKKDMEQFKPMDRLLCGDVGYGKTEV 663

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
            L  A K + ++   ++  L     L +         Y+  +         IE  SR+ +
Sbjct: 664 ALRAAFKAMMDD--KQVAFLVPTTILAQQH-------YNTAIDRVGNFPVEIEMLSRFRS 714

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
                E                +         +         +     + G  +      
Sbjct: 715 PAKQKE---------------ILKNVKNGKVNLLIGTHKLLSKNLEFKDLGLLIIDEEQR 759

Query: 511 RPLRFEEWNCLRPTTIVV---SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--- 564
             ++ +E        I V   SATP    ++          IR   ++D P E R     
Sbjct: 760 FGVKHKETLKKIKENIDVLSLSATPIPRTMQMSLVG-----IRDMSILDDPPEERVTIAT 814

Query: 565 ---RTQVEDVYDEINLAAQQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVK 617
                    + + I     +G ++          +    +L+  + +  I +   HS++ 
Sbjct: 815 FVLEYNDSIIREAIYKEIDRGGQVYFVYNRIHDMDKMYVELSRLVPDAKIAMA--HSKLS 872

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             E   I+ D + G++D+L+   ++  G+DI  C  + I DADK G  +    L Q  GR
Sbjct: 873 NKELENIMYDFQEGEYDILLCTTIIETGMDIKNCNTMIIYDADKMGLSQ----LYQLKGR 928

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRR 708
             R+       +     K     + E + +R
Sbjct: 929 IGRSTRRAYAYFTYEKDK----VLTEISEKR 955


>gi|313888106|ref|ZP_07821780.1| transcription-repair coupling factor [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845796|gb|EFR33183.1| transcription-repair coupling factor [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 1159

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 82/517 (15%), Positives = 196/517 (37%), Gaps = 65/517 (12%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A  +L   I    K   + G   +  +   A    A  +   +++ +++ A + Y + +
Sbjct: 12  EAFKELDNSIK-ISKNTAVFGSEEAVLSLF-APTFAADGKKVCLISQDRVRARKAYEDIE 69

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +      V Y              P  D +     S +++  + R  A   +      +V
Sbjct: 70  SISDEACVYY--------------PEKDVFFYDRDSKSKENTKKRLEAMAEISSGRAKMV 115

Query: 275 VSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V++++ +   I   E +S     +++G  +   +L   LV+  Y+R       G F + G
Sbjct: 116 VTTLNALTAKISRPEIFSSYKTSIEVGQVLNLDDLPKKLVEMGYERFPSVEGLGQFSLRG 175

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+I     +D  +R+ +F ++++ I  F   + + I  +E I IY     +      +
Sbjct: 176 SIIDI---GTQDANYRIELFDDEVDSIRSFEIESQRSIEKLEKITIYPIEDLIIKADERD 232

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
              + IK++L     +++ +G+  E  RL ++    ++ LE   +  + +    Y+    
Sbjct: 233 QVAERIKKDL----SKIKLQGK--EKDRLNEKFLRYVDRLENQETIINKDLILPYVDQNE 286

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
            G    +  +Y+ +D +  ++E    + +   +   +  + A L E G    S       
Sbjct: 287 VG----SFLDYL-DDFIFLIEEPSRILEREEELDLANGEKFAILIENGEVTKS------- 334

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP----VEIRSART--- 566
                          +      +L +   I    +++P  +  P     ++++S      
Sbjct: 335 ---------HEKTFYNYKDIVDKLNEKTLITFNALLKPPKMFKPKDIVNIKVKSVTNYMS 385

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +++   ++++   +   +++L   T++ A+ L ++L +      Y     K  +  +I  
Sbjct: 386 KIKLFKEDLDYYGKNNFQVILLGATEKRAKRLFDHLVDLG----YSPHLAKNTKNEKITS 441

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            L       +V    L EG++  +   V I  ++  G
Sbjct: 442 KL-------VVTTGALNEGIEFSDSRTVFINYSEIYG 471



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 73/194 (37%), Gaps = 15/194 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+     I +  +I        PVE          V + I    ++G 
Sbjct: 766 TLTLTATPIPRTLQMSMIGIRDMSVIEEPPEERFPVETYVLEYNNLMVREAILKEIERGG 825

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E    +L + + E    +     ++      + + D   G  DVLV  
Sbjct: 826 QVYFLYNKVSNMENKLLELRKLVPEATFSMAN--GQMTEKALEDTMIDFIEGNVDVLVCS 883

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I D+++ G  +    L Q  GR  R+       +    + S   
Sbjct: 884 TIIETGMDVPNANTMIITDSNRLGLSQ----LYQLRGRIGRSSRIAYAYFTYDRSTS--- 936

Query: 700 AIDETTRRREKQLE 713
            I E  ++R + ++
Sbjct: 937 -ISEVAQKRLQAIK 949


>gi|313635144|gb|EFS01470.1| transcription-repair-coupling factor [Listeria seeligeri FSL
           N1-067]
          Length = 258

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 107/258 (41%), Gaps = 15/258 (5%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +L  +  +EK QL+ G+TGS +    + V  A +RP + +  N   A +LY +  + 
Sbjct: 14  IRAVLNSLDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + +  +             P  +    + S  + ++   R  A   L+     IV+ 
Sbjct: 74  MEADRLFLY-------------PADELISSELSISSPELRGQRVEALDFLISGKPGIVIV 120

Query: 277 SVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            V+ +  +    S  +     +  G+ ++ + L   LV   Y    +    G F V G  
Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPEVLRQQLVTMGYTMSGMVNTPGEFSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P   E+   R+ +F  +++ +  F   T +    VE  ++   +  +  +      
Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTSRVEEFRLLPATEIILDQSYYPDI 239

Query: 396 MKYIKEELKMRLIELEKE 413
           +  +++++ + L EL+++
Sbjct: 240 VHRLEKKMILTLNELKEK 257


>gi|319746177|gb|EFV98447.1| transcription-repair coupling factor [Streptococcus agalactiae ATCC
           13813]
          Length = 1165

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 95/510 (18%), Positives = 194/510 (38%), Gaps = 55/510 (10%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +     G+ +  + QL++G +G+ K   +A   E + +  +V+   +  + +L S+
Sbjct: 9   QNKVVRTWHSGLVTNSR-QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQNDSDKLSSD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F +          VP  +           ++  +R        E+N  
Sbjct: 68  ISSLIGEDNVYQFFADD--------VPAAEFIFSSLDKSISRLSALRFL---KDPEKNGV 116

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++ S       + + E +S+   + +IG      +L  +LV   Y++       G F   
Sbjct: 117 LITSISGLRLLLPNPEVFSKSQYKFEIGQECYLDKLSKNLVNLGYQKVSQVFSPGEFSQR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++IF    ++  +R+  FG++I+ I +F   T + ++ +E+++I      +      
Sbjct: 177 GDILDIFEM-TQEYPYRLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDIILQDADF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
             A    K++L+  L          E QR      Y  E+L TT +     N  R+L+  
Sbjct: 236 ERA----KKKLEGYL------VTASEEQR-----AYLSEVLSTTENHFKHSNIRRFLSIF 280

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E    + +YIPE + LFVD+    + + + +            + G    S ++   
Sbjct: 281 YEKE--WGILDYIPEGTPLFVDDFQKIVDRNAKLDLEIASLLTEDLQQGKS-HSSLNYFS 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             +++    +P T   +   G   L+  +     Q             ++    Q   + 
Sbjct: 338 DPYKQLRQYQPATFFSNFHKGLGNLKFDKLHHFTQYG-----------MQEFFNQFPLLV 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEIN   + G  +LL V +++    L E L E  +    + S+           D+   +
Sbjct: 387 DEINRYKKSGATVLLQVDSQKGLNLLQENLKEYGLD--LIISDK---------NDIVPKE 435

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKE 662
             ++VG   L  G    +  +V I + +  
Sbjct: 436 SQLIVGH--LSNGFYFADEKIVLITEREIY 463



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     T    V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPGLVREAIIREIDRGG 821

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +     L E        ++H ++  ++    + D   G +DVLV   +
Sbjct: 822 QVFYVYNKVDTIDQKVSELQELVPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTI 881

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DI     + + +AD  G L +   L   +GR+ R   + ++   D +   I  
Sbjct: 882 IETGVDISNVNTLFVENADHMG-LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEISE 938


>gi|77407708|ref|ZP_00784463.1| reticulocyte binding protein [Streptococcus agalactiae COH1]
 gi|77173707|gb|EAO76821.1| reticulocyte binding protein [Streptococcus agalactiae COH1]
          Length = 1165

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 95/510 (18%), Positives = 194/510 (38%), Gaps = 55/510 (10%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +     G+ +  + QL++G +G+ K   +A   E + +  +V+   +  + +L S+
Sbjct: 9   QNKVVRTWHSGLVTNSR-QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQNDSDKLSSD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F +          VP  +           ++  +R        E+N  
Sbjct: 68  ISSLIGEDNVYQFFADD--------VPAAEFIFSSLDKSISRLSALRFL---KDPEKNGV 116

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++ S       + + E +S+   + +IG      +L  +LV   Y++       G F   
Sbjct: 117 LITSISGLRLLLPNPEVFSKSQYKFEIGQECYLDKLSKNLVNLGYQKVSQVFSPGEFSQR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++IF    ++  +R+  FG++I+ I +F   T + ++ +E+++I      +      
Sbjct: 177 GDILDIFEM-TQEYPYRLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDIILQDADF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
             A    K++L+  L          E QR      Y  E+L TT +     N  R+L+  
Sbjct: 236 ERA----KKKLEGYL------VTASEEQR-----AYLSEVLSTTENHFKHSNIRRFLSIF 280

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E    + +YIPE + LFVD+    + + + +            + G    S ++   
Sbjct: 281 YEKE--WGILDYIPEGTPLFVDDFQKIVDRNAKLDLEIASLLTEDLQQGKS-HSSLNYFS 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             +++    +P T   +   G   L+  +     Q             ++    Q   + 
Sbjct: 338 DPYKQLRQYQPATFFSNFHKGLGNLKFDKLHHFTQYG-----------MQEFFNQFPLLV 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEIN   + G  +LL V +++    L E L E  +    + S+           D+   +
Sbjct: 387 DEINRYKKSGATVLLQVDSQKGLNLLQENLKEYGLD--LIISDK---------NDIVPKE 435

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKE 662
             ++VG   L  G    +  +V I + +  
Sbjct: 436 SQLIVGH--LSNGFYFADEKIVLITEREIY 463



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     T    V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPGLVREAIIREIDRGG 821

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        ++H ++  ++    + D   G +DVLV   +
Sbjct: 822 QVFYVYNKVDTIEQKVSELQELVPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTI 881

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DI     + + +AD  G L +   L   +GR+ R   + ++   D +   I  
Sbjct: 882 IETGVDISNVNTLFVENADHMG-LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEISE 938


>gi|160931462|ref|ZP_02078858.1| hypothetical protein CLOLEP_00295 [Clostridium leptum DSM 753]
 gi|156869527|gb|EDO62899.1| hypothetical protein CLOLEP_00295 [Clostridium leptum DSM 753]
          Length = 1149

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 84/510 (16%), Positives = 172/510 (33%), Gaps = 72/510 (14%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             L+  +        + GV+G  K   +  +     R A+V+A ++    +L ++  +  
Sbjct: 15  ETLVSAVERHNTPAAVTGVSGIHKAHLIHSLCARTGRKALVLASDEGEGQRLCNDLSSMG 74

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
               V                P  D         + + +  R      +L+ +  +V+S 
Sbjct: 75  TAALVY---------------PARDFNFRAAEGQSREYEHQRLQVMAGMLDGDYQVVISC 119

Query: 278 V-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + + +      +      + L+ G     +++ + L    Y+R       G F V G  +
Sbjct: 120 IDAALQYTIPPDELRSKRLTLRAGQEAPLEKIEALLSASGYERYQQVEGPGQFAVRGGIL 179

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIKIYANSHYVTPRPTLNTA 395
           + F         RV  +G++I+ +  F P T ++  + +E I +  ++  +   P     
Sbjct: 180 DFFTPDAS-APVRVEFWGDEIDTLCYFDPETQRRTDDPLEEITLAPSTEVLVSSPGS--- 235

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
                  L  ++  L    R   A R ++R+  + + L       S + +   L      
Sbjct: 236 -------LAKKIERLSAGLRGKTAVRAKERLAQEADQLLAGKRPGSADKFLPLLYP---- 284

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P TL +Y+  ++L+F  E      ++               E G           +  
Sbjct: 285 -SPATLLDYLEPEALVFQSEPIKIKERLRSTAWQWGEDLKDYLEEG-----------ILC 332

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP----VEIRSAR-----T 566
           +  +      I V        LE    + ++  +R  G  D P    + + + +      
Sbjct: 333 KGLDAFSGDYIYVQKQ-----LEHRDCVYLDTFVR--GSYDTPLSSLINLNARQLSVWGG 385

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            ++ + +++N      +RI++   T+R A    E L    I   Y   + KT        
Sbjct: 386 GMQLLQEDLNAILSPKMRIVVLGGTERSARAAAEDLQNSGIPCEYRD-DAKT-------- 436

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            L LG+  VL     L  G + P      I
Sbjct: 437 -LFLGRVTVL--PGSLSAGFEYPTANFALI 463



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 60/149 (40%), Gaps = 11/149 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-----VYDEINLAA 579
            + +SATP    L      I +     + L + P +    +T V +     + D +    
Sbjct: 766 VLTLSATPIPRTLNMALSGIRDM----SSLEEAPQDRHPVQTYVLEYDQAVINDAVRREL 821

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           ++G ++          E +   L  +    +V + H ++   E  E+ R +   + +VLV
Sbjct: 822 RRGGQVYYLHNKVESIERVAARLQAQIPEAKVGFGHGKMPEGELSEVWRRVMEQEINVLV 881

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLR 666
              ++  G+D+P    + I DAD  G  +
Sbjct: 882 CTTIIETGVDVPNVNTIIIEDADHMGLSQ 910


>gi|87125795|ref|ZP_01081638.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9917]
 gi|86166604|gb|EAQ67868.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9917]
          Length = 1184

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 97/514 (18%), Positives = 190/514 (36%), Gaps = 62/514 (12%)

Query: 153 QPAAIA-QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           Q +A+  +LL+    R++  LL G   + +      +     +P +V+ P    A +  +
Sbjct: 11  QSSALTGELLER-RCRDQRLLLRGGHRAARALVATALARRADQPLLVVVPTLEEAGRWTA 69

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
             +     +   Y  S    Y+P  + P T+    +   ++E          +S  +R D
Sbjct: 70  LLELMGWSSTQLYPTSEGSPYEP--FDPTTEITWGQLQVLSE---------LQSGSDRPD 118

Query: 272 CIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             +V++  C+   +   ++ ++    L+ GD+V+ +EL S L +  Y+R       GT+ 
Sbjct: 119 LAIVATERCLQPHLPPPQALAERCRSLRKGDTVDLEELASCLSQLGYERVSSIDQEGTWS 178

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
             GD ++IFP   E +  R+  FG+D++++ EF P + + +  +E++++           
Sbjct: 179 RRGDIVDIFPVSSE-LPVRLEFFGDDLDKLREFDPASQRSLDAIESLRLTPTGFSPL--- 234

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                   I E+L+ R+   +    LL  Q L++        L   G+ + +    R L 
Sbjct: 235 --------IAEQLRERMP--DGLEGLLSEQALQE--------LLEGGTPEGM----RRLM 272

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
           G    E P +L +Y+P    + +DE                 +   L        +   +
Sbjct: 273 GLAW-EAPASLLDYLPAHCCVAIDERRHGRAHGQQWLDHAEEQHGEL--------AAELS 323

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
           +PL        RP    ++        +  +    +       L   PV       Q   
Sbjct: 324 QPLPL----LHRPIEAAMALAEAFDGFDLAELQENDGHANAFDLTSRPVPAYP--NQFGK 377

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + + +     +   + L       A  L   L E +   R++ +         I R +  
Sbjct: 378 LGELVKGYQAEKQSVWLLSAQPSRAVAL---LEEHDCISRFVPNAADAPA---IERLVEQ 431

Query: 631 GKFDVLVGINLLR-EGLDIPECGLVAILDADKEG 663
           G    L        EGL +P   +V I D +  G
Sbjct: 432 GTPVALKTKGTAELEGLQLPAWRVVLITDREFFG 465



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 17/195 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E V   I    
Sbjct: 764 VLTLSATPIPRTLYMSLSGVREMSLITT----PPPLRRPIKTHLAALDEEAVRSAIRQEL 819

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      E++   L +    +++   H ++   E    +     G+ DV++
Sbjct: 820 DRGGQVFYVVPRVEGIEEVAAQLRQMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVML 879

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA + G  +    L   +GR+    ++ +    D      
Sbjct: 880 CTTIVESGLDIPRVNTILIEDAHRFGLAQ-LYQLRGRVGRSGIQAHAWLFYPGDASLSDA 938

Query: 698 QLAIDETTRRREKQL 712
                   R R  Q 
Sbjct: 939 AR-----QRLRAIQE 948


>gi|22536193|ref|NP_687044.1| transcription-repair coupling factor [Streptococcus agalactiae
           2603V/R]
 gi|25010083|ref|NP_734478.1| transcription-repair coupling factor [Streptococcus agalactiae
           NEM316]
 gi|77414464|ref|ZP_00790614.1| reticulocyte binding protein [Streptococcus agalactiae 515]
 gi|22533010|gb|AAM98916.1|AE014191_8 transcription-repair coupling factor [Streptococcus agalactiae
           2603V/R]
 gi|23094434|emb|CAD45653.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159474|gb|EAO70635.1| reticulocyte binding protein [Streptococcus agalactiae 515]
          Length = 1165

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 95/510 (18%), Positives = 195/510 (38%), Gaps = 55/510 (10%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +     G+ +  + QL++G +G+ K   +A   E + +  +V+   +  + +L S+
Sbjct: 9   QNKVVRTWHSGLVTNSR-QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQTDSDKLSSD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F +          VP  +           ++  +R        E+N  
Sbjct: 68  ISSLIGEDNVYQFFADD--------VPAAEFIFSSLDKSISRLSALRFL---KDPEKNGV 116

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++ S       + + E +S+   + +IG      +L  +LV   Y++       G F   
Sbjct: 117 LITSISGLRLLLPNPEVFSKSQYKFEIGQECYLDKLCKNLVNLGYQKVSQVFSPGEFSQR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++IF    ++  +R+  FG++I+ I +F   T + ++ +E+++I      +      
Sbjct: 177 GDILDIFEM-TQEYPYRLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDIILQDADF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
             A    K++L+  L          E QR     TY  E+L TT +     +  R+L+  
Sbjct: 236 ERA----KKKLEGYL------VTASEVQR-----TYLSEVLSTTENHFKHSDIRRFLSIF 280

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E    + +YIPE + LFVD+    + + + +            + G    S ++   
Sbjct: 281 YEKE--WGILDYIPEGTPLFVDDFQKIVDRNAKLDLEIASLLTEDLQQGKS-HSSLNYFS 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             +++    +P T   +   G   L+  +     Q             ++    Q   + 
Sbjct: 338 DPYKQLRQYQPATFFSNFHKGLGNLKFDKLHHFTQYG-----------MQEFFNQFPLLV 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEIN   + G  +LL V +++    L E L E  +    + S+   + + E         
Sbjct: 387 DEINRYKKSGATVLLQVDSQKGLNLLQENLKEYGLD--LIISDKNDIVQKES-------- 436

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKE 662
             ++VG   L  G    +  +V I + +  
Sbjct: 437 -QLIVGH--LSNGFYFADEKIVLITEREIY 463



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     T    V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPGLVREAIIREIDRGG 821

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +     L E        ++H ++  ++    + D   G +DVLV   +
Sbjct: 822 QVFYVYNKVDTIDQKVSELQELVPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTI 881

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DI     + + +AD  G L +   L   +GR+ R   + ++   D +   I  
Sbjct: 882 IETGVDISNVNTLFVENADHMG-LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEISE 938


>gi|326692375|ref|ZP_08229380.1| transcription-repair coupling factor [Leuconostoc argentinum KCTC
           3773]
          Length = 1176

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 107/632 (16%), Positives = 211/632 (33%), Gaps = 78/632 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I  +       +  QLLLGV GS +  ++A + +A  R  +V+   ++ A QL ++
Sbjct: 11  QSETIQNITTHATE-DSTQLLLGVHGSARAASIAALYQAQPRQMLVVTDTQVHADQLLAD 69

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                                     P  ++   + +  + ++   R +   +L  +   
Sbjct: 70  LSQL---------------TAAAMGFPAEESLATEMAISSPELRMQRVATLLALRRQEKV 114

Query: 273 IVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IVV+S++ +  +    E+  Q  + L +G++    ++ ++L+   Y    +    G F  
Sbjct: 115 IVVTSLAGVERLLPKPETLDQASLNLAVGETYALDDIKATLMMMGYTPTKLVQTPGEFAQ 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I+I+P   E+   R+  F +++++I  F   T ++  N ET  I   + ++     
Sbjct: 175 RGSIIDIYPFTGEE-PVRLDFFDDELDQIKSFDVSTQKRTGNFETATIEPVTDFIVSETD 233

Query: 392 L-------NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
                     A    + EL     +    G  L  Q LE R+  +               
Sbjct: 234 YTAAAASIEAAFNDYRRELVGVEKKHATTGFALTHQLLETRVREN--------------R 279

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
              Y T    GE   TL  Y   D LL +DE           +                L
Sbjct: 280 LLPYATHFFGGET--TLLAYFQPDHLLILDEYTRIKETGLTQHNQAQEWVEQQISSYQLL 337

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           P       L        R T  + +   G  +++     +VE   RP             
Sbjct: 338 PRQTFRADLTALLHQDKRATLYLANFKRGLSQMKWTN--LVEVTTRPANQYY-------- 387

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q+  +  +++ A   G  ++L +   +  ++    L +    V      ++T      
Sbjct: 388 -GQMPALMTDLDQAQGTGTTVILLLDDAKQRQNFQATLTDLEQPV------LETRAVQPH 440

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---- 680
              +  G          L  G + P+  L  +   +     R  T   + +  A R    
Sbjct: 441 HVQMMAGD---------LSAGFEWPQLHLTVLTAHELFAKSRRTTPRPRQMANAERLKSY 491

Query: 681 ---NVNSKVILYADTITKS--IQLAIDETTRRREKQLEHNKKHNI-NPQSVKEKIMEVID 734
              NV   V+     I +   +Q    +  ++    + + K   I  P +    I + I 
Sbjct: 492 NELNVGDYVVHVNHGIGRYEGLQTMTVDGGKQDYLTIAYQKNAKIFIPVTQLNLIQKYIG 551

Query: 735 PILLEDAATTNISIDAQQLSLSKKKGKAHLKS 766
                 A   N  +   + + +K++  A ++ 
Sbjct: 552 ASDAAKAPKLN-KLGGTEWAKTKRQVAAKIED 582



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 10/186 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G     +I        P++          V + I     +  
Sbjct: 771 VLTLTATPIPRTLNMAMVGARDLSVIETPPANRFPIQTYVLEADWTIVRNAIEKELARDG 830

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   + E     R   +H ++   +   I+ D   G +DVLV   +
Sbjct: 831 QVFYLHNRVADLDRVVSQIEELVPSARVAAIHGQMSETQLESILFDFLNGNYDVLVTTTI 890

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +AD  G  +    L Q  GR  R+       +    +++     
Sbjct: 891 IETGVDIPNANTLIVENADHMGLSQ----LYQLRGRVGRSTRLAYAYFTYPFSRTPS--- 943

Query: 702 DETTRR 707
           +E  +R
Sbjct: 944 EEAEKR 949


>gi|312623038|ref|YP_004024651.1| transcription-repair coupling factor [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203505|gb|ADQ46832.1| transcription-repair coupling factor [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 1141

 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 88/502 (17%), Positives = 187/502 (37%), Gaps = 58/502 (11%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            +  +L + +  +    ++ G+   GK   +  + E   + A+ +       A+L  E +
Sbjct: 9   ESFKRLEEDVVKKSLPLVVTGLGEMGKALVVKSLCEKFNKKALFIT---TQRAKLEWERR 65

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
                + V            E   P   ++ +   S   +I+++     +   +  D ++
Sbjct: 66  FKNIFSCVVSLQ--------ERENPYIASFAKSRDSEISRIEQL----VKIFEDGFDVLI 113

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +SS +       ++      + L  G  ++ + L+  L+K  Y+R      +G F   G 
Sbjct: 114 LSSQNLFEKYTDLKFDY---IHLTEGHDIQLEILIEKLLKFGYERVKTVEKKGQFSQKGG 170

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++I+P        R+  FG+ I+ I  F   T +    + ++KIY    +       + 
Sbjct: 171 IVDIYPV-ASKYPVRIEFFGDTIDTIRLFDVETQKSFERINSMKIYKAIEWDL-EEDFSE 228

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
            +K +KE+ K   ++L+++GR    + LE+     +E L+      ++E    Y      
Sbjct: 229 GLKRVKEDYKKMKLKLKEDGR----KNLEESFREVVEELQL-----NVERLYPYYY---- 275

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
            +   ++ +   E  L+FVDE +     +    +      + L E GF LP   +     
Sbjct: 276 -QQFFSVVDIFGE-CLIFVDEYNQVYSSLKAFEQEIQEMFSDLLEKGFVLPKMAECYFTT 333

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            E    L  + I+ +      ELE    I            +   E+ S   Q E + D+
Sbjct: 334 SEVLEKLSRSIILQTFVSAIKELELKDII----------SFNFLRELPSYNGQKEVLIDD 383

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +     +   I +   ++   EDL + L + +I               E     R G + 
Sbjct: 384 LKYYMSKRYTINIFTGSRTSLEDLADALLKEDI----------QFSEAEEPEVERTGVYL 433

Query: 635 VLVGINLLREGLDIPECGLVAI 656
           +      + +G+++ +  LV +
Sbjct: 434 I---ARSIEKGIEVQDLKLVYL 452



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 69/175 (39%), Gaps = 8/175 (4%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          + + I     +G 
Sbjct: 756 VLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRFPVQTFVLEYNERIIKEAILKEISRGG 815

Query: 584 RILLTVLTKRMAEDLTEYLYER---NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           ++       +  +++   L +    ++++   H ++   E  E++ D   G++DVLV   
Sbjct: 816 QVFYLYNRVKDIQEVAAKLQKLVGDSVKIACAHGKMSEEELEEVLIDFIEGRYDVLVCTT 875

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           ++  G+D+P    + + D+D+ G  +    L Q  GR  R+       +     K
Sbjct: 876 IIESGVDMPNVNTLIVEDSDRLGLAQ----LYQLRGRVGRSSRLAYAYFTFRKDK 926


>gi|312134559|ref|YP_004001897.1| transcription-repair coupling factor [Caldicellulosiruptor
           owensensis OL]
 gi|311774610|gb|ADQ04097.1| transcription-repair coupling factor [Caldicellulosiruptor
           owensensis OL]
          Length = 1141

 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 90/502 (17%), Positives = 187/502 (37%), Gaps = 58/502 (11%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            +  +L + +  +    ++  +   GK   +  + E   R A+ +       A+L  E +
Sbjct: 9   ESFKRLEENVIKKNLPIVVTDLGEMGKAHVIKLLCEKFNRKALFIT---TQRAKLEWERR 65

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
                N+V       + +            +    S + +I+RM     +   +  D ++
Sbjct: 66  FKSLFNSVVSIQERENPF-----------VVSFAKSRDSEINRME-QFVKIFEDGFDILI 113

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +SS +      +++      + L  G  ++ + L+  L+K  Y+R      +G F   G 
Sbjct: 114 LSSQNLFEKYTNLKFGY---IHLTEGFDIQLENLIEKLLKFGYERVKTVEKKGQFSQKGG 170

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++I+P        R+  FG+ I+ I  F   T +    ++++KIY    +       + 
Sbjct: 171 IVDIYPV-ASRYPVRIEFFGDTIDTIRLFDVETQKSFERIDSVKIYKAIEWDL-EEDFSE 228

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
            +K IKE+ K   ++L+++GR    + LE+     +E L+      ++E    Y      
Sbjct: 229 GLKCIKEDCKKMKLKLKEDGR----KNLEESFREVVEELQL-----NVERLYPYYY---- 275

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
            +   ++ +   E  L+FVDE       +  + +      + L E GF LP   +     
Sbjct: 276 -QQFFSVVDIFSE-CLVFVDEYSQVYSSLKALEQEKQEMFSDLLEKGFVLPKMAECYFTM 333

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            E    L  + I+ +      ELE    I            +   E+ S   Q E + D+
Sbjct: 334 SEVLEKLSGSIILQTFVSVIKELELKDII----------SFNFLRELPSYNGQKEVLIDD 383

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +     +   I +   ++   EDL + L   +I               E     R G + 
Sbjct: 384 LKYYMSKNYTINIFAGSRTSLEDLADALLREDI----------QFSEAEEPEVERTGVYL 433

Query: 635 VLVGINLLREGLDIPECGLVAI 656
           +      + +G+++ +  LV +
Sbjct: 434 I---ARSIEKGIEVQDLKLVYL 452



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 69/175 (39%), Gaps = 8/175 (4%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          + + I     +G 
Sbjct: 756 VLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRFPVQTFVLEYNERIIKEAILREISRGG 815

Query: 584 RILLTVLTKRMAEDLTEYLYER---NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           ++       +  +++   L      ++++   H +++  E  E++ D   G++DVLV   
Sbjct: 816 QVFYLYNRVKDIQEVAAKLQNLVGEDVKIACAHGQMEEEELEEVLIDFIEGRYDVLVCTT 875

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           ++  G+D+P    + + D+D+ G  +    L Q  GR  R+       +     K
Sbjct: 876 IIESGVDMPNVNTLIVEDSDRLGLAQ----LYQLRGRVGRSSRIAYAYFTFRKDK 926


>gi|147669732|ref|YP_001214550.1| transcription-repair coupling factor [Dehalococcoides sp. BAV1]
 gi|146270680|gb|ABQ17672.1| transcription-repair coupling factor [Dehalococcoides sp. BAV1]
          Length = 1148

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 84/462 (18%), Positives = 164/462 (35%), Gaps = 56/462 (12%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ  +   L + +   E    +L    +G+ F++A V   ++ P +V+      A +L  
Sbjct: 11  DQSPSFNSLFESLDRGEADISVL---DAGRGFSLAAVYRKLKCPMLVITSQPERARELLE 67

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN- 270
           +   +               YQ               S  N  +++MR +       R+ 
Sbjct: 68  QIAAYSGEEPGFLPDPSLLPYQ------------RAVSDRNSSLEKMRLAGILGGFIRSG 115

Query: 271 --DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
               IV +  + +    S + + Q  VQ+  G   E + L+    +  Y+++ I  + GT
Sbjct: 116 DARIIVTAVPALLQRYISPKVFEQSFVQVWTGLETEPQNLICRFQQLGYRQESIVEMPGT 175

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           +   G  ++IFP H ED   R+  FGN +E +  F P + +  + V  + I   S     
Sbjct: 176 YSHRGGILDIFP-HTEDNPVRLEFFGNTLESLRNFDPQSQRSGKQVNELTISPASEIFHL 234

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
                   +  ++ELK +L  L  +    E  R    ++ D+  L+     +  E ++  
Sbjct: 235 G-------QLPRQELKNKLDALLTDNLNPEFSR---TLSADINHLQEGLKPEYPEFFAPL 284

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
                      ++ +Y+P D+L+ +DE          +       ++     G  LPS  
Sbjct: 285 FN-------TSSILDYLPADALVVLDEPASIEQAAFHLDNEAEELRSDRLSQG-ELPSVY 336

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS-ARTQ 567
                               S    S  L+  + +I+    R +  +            +
Sbjct: 337 PRP---------------YFSWAEISEMLKTKKRLIMASFGRESESLKLEFASPDNYVGR 381

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           +  +Y+++        R+++       A  LTE L E  I  
Sbjct: 382 LTSLYEKLPELKGHAGRVVIVS---HQAARLTELLAEEGIST 420



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 17/191 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           E +  LR     + +SATP    L         +  I  P G   P   + +A    E +
Sbjct: 747 EFFKKLRAQVDVLTLSATPIPRTLHMSMVGVRDMSIIETPPGERLPIKTVVAAFD--ERL 804

Query: 572 YDEINLAAQQGLRILLTVLTKRMA-----EDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
             E  L   +    +  V  + M      E + + + E  I +   H ++   +   ++ 
Sbjct: 805 IREAILREMERNGQVFFVNNRVMGINLLAERIQQLVPEARIGIG--HGQMAEEKLAAVMA 862

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D    + DVLV   ++  G+D+P    + I  AD+ G     T L Q  GR  R+     
Sbjct: 863 DFVRHELDVLVCTTIIESGVDVPNANTLIINRADRFGL----TQLYQLRGRVGRSSQLAY 918

Query: 687 ILYADTITKSI 697
             +     K +
Sbjct: 919 AYFLYEKEKRL 929


>gi|167772369|ref|ZP_02444422.1| hypothetical protein ANACOL_03746 [Anaerotruncus colihominis DSM
           17241]
 gi|167665472|gb|EDS09602.1| hypothetical protein ANACOL_03746 [Anaerotruncus colihominis DSM
           17241]
          Length = 1157

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 92/511 (18%), Positives = 179/511 (35%), Gaps = 64/511 (12%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           A  ++   +       L  G++   K   +  +   +Q   +V+ P++  A ++  +   
Sbjct: 13  AFERVKGAVAGHATPVLATGLSAVHKAQLVVSITGLLQMGGLVIVPDEAAAVRICEDINI 72

Query: 216 FFP-HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
                 AV+Y              P  +        ++ + +  R +    L   +  IV
Sbjct: 73  MAGAGTAVQY--------------PSREPTFYDVQGVSHEYEHARLAVLGRLRAGDARIV 118

Query: 275 VSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
            +S  + +         S     ++ G   + KEL++ LV   Y R D       F   G
Sbjct: 119 AASAQAALQYTMPPSVLSARTRTIESGGQYDIKELIAFLVAAGYTRCDQVDGVCQFSQRG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++  P H+ D  +R+  +G++I+ IS F   T +++  V+ + I   +  V   P   
Sbjct: 179 GILDFSPPHMPD-PFRIEFWGDEIDTISTFKTDTQRRVDTVKRVDITPAAEVVADSPAR- 236

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                    L   L    K  R  + +R ++++  ++E +E     QS++ +   L    
Sbjct: 237 ---------LVKLLESAAKGLRGTQGKRAKEKLAQEIEQIENGVLPQSLDRWMPLLYP-- 285

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
               P TLF+Y+P+ +L   D +      +  +          L E G  L    D    
Sbjct: 286 ---EPATLFDYMPKAALFLCDTA-NCRESLKTVQWQQNEDVKILLEEG-VLFKGCDRFAE 340

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-----SARTQV 568
            F +           S T       +  G I          +   V+IR     S   + 
Sbjct: 341 DFVDLQRHAAQ----SNTVLLDTFARSVGDIP---------LRDMVDIRAVQLSSWSGEF 387

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             + +++     +G R+ +   T+R A  L E L    +             +   + DL
Sbjct: 388 SLLREDVREYIGRGYRVAVFAGTERAAASLAEDLTRAGLPA----------VQSGDLTDL 437

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           + G   V+     +  G++ P+  L  I  A
Sbjct: 438 KPGGVRVVPAS--MSAGMEYPDIKLAVISQA 466



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 70/192 (36%), Gaps = 24/192 (12%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI    +I        PV+          V   I    ++G 
Sbjct: 766 VLTLSATPIPRTLNMAMSGIRDMSVIEEAPQDRHPVQTYVVEHDWGVVAQAIERELRRGG 825

Query: 584 RILLT---VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           ++      V +        + L  +   V   H ++   +   + R L   + D+LV   
Sbjct: 826 QVFYLHNRVESIDSCAYRIKQLVPQARIVTA-HGKMTEEQLSRVWRQLLDYEVDILVCTT 884

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P C  + I DAD+ G  +    L Q  GR  R               S + A
Sbjct: 885 IIETGVDVPNCNTLIIEDADRMGLSQ----LYQLRGRVGR---------------SNRRA 925

Query: 701 IDETTRRREKQL 712
               T RR+KQL
Sbjct: 926 FAYLTFRRDKQL 937


>gi|332522484|ref|ZP_08398736.1| transcription-repair coupling factor [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313748|gb|EGJ26733.1| transcription-repair coupling factor [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 1166

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 77/511 (15%), Positives = 183/511 (35%), Gaps = 57/511 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   + + +         QL++G++GS K   +A          I++  ++    +L S+
Sbjct: 9   QNKLLQEWMSN-SVNLDRQLIMGLSGSSKALAVAANYRYQNGKLIIITSSQNELEKLASD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM-RHSATRSLLERND 271
                  + V  F +  D   P  ++  +   ++K  S  E +  +  H+A         
Sbjct: 68  LSALIGEDEVYQFFA--DDVAPAEFIFSS---LDKSLSRIEALQFLINHNA-------KG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            ++ + V     + +   + +   +  +G+     +L+ +L +  Y++    I  G F  
Sbjct: 116 ILLTTIVGLKILLPNPRIFQKYSFRFCVGNDYNLDDLVKNLTQIGYQKVSQVINPGEFSR 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++I+    +   +R+  FG++I+ I  F   + + I N+  I I   S  +  +  
Sbjct: 176 RGDILDIYEV-RQANPYRIEFFGDEIDGIRYFDSDSQKSIENLREIMISPASEMILEKAD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
            +  +  ++  L +   E +                Y  ++L  +      ++  ++L+ 
Sbjct: 235 FSRGISNLESALHLVNAESKS---------------YLEDILAVSKDGYRHKDIGKFLSL 279

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               E   TL +YIP+   +F D+    + + +       +        G  LPS +   
Sbjct: 280 FYEKE--WTLLDYIPKGVPVFFDDFQKILDKNASFDLEVANLLTEDLHQGKALPS-LHYF 336

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
              +      +P T   +   G         I  +++ + T              Q   +
Sbjct: 337 ADTYRNIRTYKPATFFSNFHKGL------GNIKFDKLYQFTQYAMQE-----FFNQFPLL 385

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            DEIN   +    +L+ V ++   E L + L + +  +  +              +++  
Sbjct: 386 IDEINRYKKSNATVLIQVESEHAYERLLKNLEDYHFNIPLID-----------HNNIQAH 434

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKE 662
           +  +++    L  G    +  +  I + +  
Sbjct: 435 QVQIII--GQLANGFYFADEKVAYITEHEIY 463



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     T    V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPSLVREAILREMDRGG 821

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +     L E        ++H ++  ++    + D   G +DVLV   +
Sbjct: 822 QVFYVYNKVDTIDKKVSQLQELVPEAAIGFVHGQMSEIQLENTLIDFINGDYDVLVATTI 881

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DI     + + +AD  G L +   L   +GR+ R   + ++   D I   I  
Sbjct: 882 IETGVDISNVNTLFVENADHMG-LSTLYQLRGRVGRSNRIAYAYLMYRPDKILSEISE 938


>gi|282852620|ref|ZP_06261962.1| transcription-repair coupling factor [Lactobacillus gasseri 224-1]
 gi|282556362|gb|EFB61982.1| transcription-repair coupling factor [Lactobacillus gasseri 224-1]
          Length = 935

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 84/510 (16%), Positives = 188/510 (36%), Gaps = 53/510 (10%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           +EK  LL GV     +  + +++   QRP I++  ++  A  L  E  N  P   V  F 
Sbjct: 22  KEKRSLLTGVNSGAFSAVLMQMLSTWQRPLILVEDSEDKAQLLLDELGNLLPDEMVFSF- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIG 285
                       P   T   + +  +      R    + L E+   IVV +   + Y + 
Sbjct: 81  ------------PVDATIATQTAVASPDELSQRLQTLKFLTEKRAGIVVITPQALQYKLS 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
               + +     K     +  EL +   +  Y+R++I    G F   GD ++++P   E+
Sbjct: 129 DPRDFIKAKQVFKPEAEFDLDELTAWFTQAGYRRENIVARPGEFARRGDILDVYPLDQEN 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+  FG++++ + EF   T + +   + + I      V     L+ A++ IK+++  
Sbjct: 189 -PVRIEFFGDEVDTVKEFDAATQRSLEEKDIVSIGPALDRVFSSRNLHEAIEKIKQDMNE 247

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
            +            + ++      +++LE  G  ++      YL  ++       L +Y+
Sbjct: 248 SIAN---------EENVKNHFVKAIDLLEADGLPENYAFLIDYLLPKS-----FNLVDYL 293

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
            ++ LL  D+       ++ +   +    +   + G  L S        FE+        
Sbjct: 294 DKNGLLLFDDWQAIKKNVADVDAQNEAFISEEIKAGAMLNSQKLR--HNFEQVVQKVKQA 351

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
            V+     S   +    +  +QI+  T       E++   +Q+  +  E+   A +G  +
Sbjct: 352 QVLF----SLFQKGMGRLKFDQILNFTTR-----EVQQFFSQMPLIKSELTRFANEGNTV 402

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           +L   +   A+ + + L +  + +  +  +    ++ +             + +     G
Sbjct: 403 VLQADSATRAKQIAQNLVDYGVDLPVVKPDQILAKKAQ-------------ITVGDFAHG 449

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             +P   LV + + +           I+T+
Sbjct: 450 FALPSLNLVYLTERELFNQRPHHRKRIKTL 479



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 65/175 (37%), Gaps = 7/175 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V + +    ++  
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPIQTYVMEEMPSVVREAVLREMKRNG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   L E     +  Y+H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFFLHNRIDDIDKVVSRLEELIPEAKIEYIHGRMSENQMEDIMYRFSRNEFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  G+D+P    + + +AD  G  +    L Q  GR  R+       +  ++ +S
Sbjct: 885 IETGVDMPNVNTMIVENADHYGLSQ----LYQLRGRIGRSARLAYAYFCISLIRS 935


>gi|253698851|ref|YP_003020040.1| transcription-repair coupling factor [Geobacter sp. M21]
 gi|251773701|gb|ACT16282.1| transcription-repair coupling factor [Geobacter sp. M21]
          Length = 1157

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 93/516 (18%), Positives = 181/516 (35%), Gaps = 54/516 (10%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
           P  +  + + +   +    + GV GS   + +++++     P +V+  ++  A +L  E 
Sbjct: 6   PEYLKSIKEKLAPEKSRLSVAGVDGSAPAYLLSRLMTESGPPLVVITADQESADELAREL 65

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DC 272
           + F   +        +D    EA  P  D   E            R +A   LL+     
Sbjct: 66  RFFSCSHGAVLPFPGWDVTPFEAASPHPDLVGE------------RLNALVRLLDGGARA 113

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +VV   + +  +   E+   +   L  G+ +E++ L+  LVK  Y    I   RG+F V 
Sbjct: 114 VVVPLAAALQRVIPRETLGGVCQYLVAGEELERETLVEKLVKLGYSHVPIVEDRGSFSVR 173

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++IFP   E    R+  FG+ +E +  F P+T + +  +  + +  +   +     +
Sbjct: 174 GGILDIFPPDQE-RPVRIEFFGDLVETMRLFDPVTQRSLEPLAELVLLPSREVILSEGVV 232

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
                     LK R   L              R    LE L+       ++         
Sbjct: 233 KEFTPR----LKRRCDHLGIGAD---------RRRELLEQLQQAIYPPGVDFLQPLFH-- 277

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
            PG    TLF+Y    +   + +    I +    +  D  + A  AE    +    D+  
Sbjct: 278 -PGLE--TLFDYAGPGATRVLVDP-AAIAEAGERFEADLAKAAARAELRDAITCDPDDLY 333

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-EDV 571
           L   E + +      +   P   EL    G  +   +R +   D  + +     +V   +
Sbjct: 334 LTAAELDSMLSDGRRLEF-P-RLELAGEGGETLR--LRCSTNSDLKLGVSPEGERVLAPL 389

Query: 572 YDEINLAAQQGLRILLTV----LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            +++      G R+L+        +R+ E L+ Y    +              R      
Sbjct: 390 TEKMVTWIAAGNRVLIPCHQAGQARRLYELLSHYRLPLDSTQDCF---ADAARRP----- 441

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
              G+ ++L     +  G  + E  LV + + +  G
Sbjct: 442 --PGRVEIL--TGEISRGFRLEEERLVVVAEEEIFG 473



 Score = 47.4 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 11/169 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + ++ATP    L      I +  I  T  VD            +++  E  L   +   
Sbjct: 770 ILTLTATPIPRTLYMSLMGIRDLSIIDTPPVDRLAIKTFVSRSSDELIREAVLRELRRGG 829

Query: 585 ILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +  V  +      MAE+L   + E  I V   H ++   E  +++     G+ ++L+  
Sbjct: 830 QVFFVHNRVQTIGAMAEELKRIVPEAKIAVG--HGQMAEKELEQVMLSFMHGETNLLLCT 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+ +     
Sbjct: 888 TIIESGLDIPTANTLIVNRADTFGLSQ----LYQLRGRVGRSKSRAYAY 932



 Score = 42.0 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 4/146 (2%)

Query: 81  QSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITF 140
             +  +  +  R  +        +A A + +    LLK        + +  +        
Sbjct: 552 VGAEGIEPRLDRLGAAGWEKAKAKARAEVQEMAAELLKIHAAREVQQGFKFSPADDMYRA 611

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    +  + DQ AAI Q++  + S R   +L+ G  G GKT   M    ++    +  
Sbjct: 612 FEASFAFEETPDQAAAIDQVIADMESPRPMDRLVCGDVGYGKTEVAMRAAFKSTLDGKQV 671

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAV 222
            ++ P  +LA Q    F +      V
Sbjct: 672 AILVPTTVLAQQHAESFASRLKDYPV 697


>gi|118587141|ref|ZP_01544570.1| transcription-repair coupling factor [Oenococcus oeni ATCC
           BAA-1163]
 gi|118432420|gb|EAV39157.1| transcription-repair coupling factor [Oenococcus oeni ATCC
           BAA-1163]
          Length = 1189

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 86/527 (16%), Positives = 196/527 (37%), Gaps = 52/527 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI-----EAMQRPAIVMAPNKILAAQLYS 211
           I +++     +   QL+ GV  + K    A V      E   +  +++   +  A QL S
Sbjct: 16  IEKIVSNQADQTSTQLISGVNDTPKAALAAGVFVRLKAEKSSKKILLLTDTQFRADQLTS 75

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           + +       V          Q E  +        +++ ++      R  A R+LL + +
Sbjct: 76  DLEALLEDENV-------FEMQSEESLATETAVASRDADLS------RVLALRALLSKEN 122

Query: 272 CIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            IVV  +S +       E + Q ++  KI +S  Q++L   L++  Y +Q +    G F 
Sbjct: 123 SIVVVPLSGLSRRYPDPEFFQQAVLDFKIANSYPQEQLAKKLIEMGYNKQTLVANPGEFS 182

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V G+ ++I+P + ++   R+  F +++E +  F   + + +  ++   +   S ++ PR 
Sbjct: 183 VRGEIVDIYPINFDE-PIRLDFFDDELESMRTFDADSQKSLNKIKQASVSPVSDFLLPRA 241

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
             +  +K +++       +L    +  E ++L +     LE  +       +  +S +  
Sbjct: 242 EFSDGLKQLEQAFVDYRNKL----KGAEKKKLTEFFNPLLEAAKHFSYGHELLPFSEFFL 297

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC--- 507
                    ++FEY+  + L+ +D+      Q +   + +             LP     
Sbjct: 298 KH-------SIFEYLQSEDLILIDDFARINDQTNIQEKKNAEWITDRLREFKLLPDLKVK 350

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +D   L  ++        I     P  +     +G+        T L+     ++    Q
Sbjct: 351 IDGINL-IKKSQQKLSKKIQKFVNPKIYLSNLTRGLAGITFTSRTQLITRQ--MQQYFGQ 407

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +  +  ++    ++   +LL    +     L   L++  +                I  D
Sbjct: 408 MPALKLDLESYRKRDFTVLLQASNRERLLSLQRTLHDFGMN-------------FAITDD 454

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +  G   + +G   L  G ++PE  +V + + +    ++ +    QT
Sbjct: 455 ILTGTAQLQIGS--LSHGFELPEEKIVVMTETELFAKVKKRVPRHQT 499



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+    G     ++        P++          +   I     +G 
Sbjct: 787 VLTLTATPIPRTLDMALVGARDLSVLETPPANRFPIQTYVLEENWPVIAYAIEKELSRGG 846

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +        +  E     +     +  V Y+H ++   +  +++ D   G +DVLV   +
Sbjct: 847 QTFFLHNRVQDIERTVGEIQRIVPDANVGYIHGQMNETQLEDVLMDFLNGIYDVLVTTTI 906

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+DIP    + + ++++ G L     L   IGR+ R
Sbjct: 907 IETGVDIPNANTLIVENSERFG-LSQLYQLRGRIGRSNR 944


>gi|76788164|ref|YP_328735.1| transcription-repair coupling factor [Streptococcus agalactiae
           A909]
 gi|77405617|ref|ZP_00782706.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
 gi|76563221|gb|ABA45805.1| transcription-repair coupling factor [Streptococcus agalactiae
           A909]
 gi|77175761|gb|EAO78541.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
          Length = 1165

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 93/510 (18%), Positives = 193/510 (37%), Gaps = 55/510 (10%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +     G+ +  + QL++G +G+ K   +A   E + +  +V+   +  + +L S+
Sbjct: 9   QNKVVRTWHSGLVTNSR-QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQNDSDKLSSD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F +          VP  +           ++  +R        E+N  
Sbjct: 68  ISSLIGEDNVYQFFADD--------VPAAEFIFSSLDKSISRLSALRFL---KDPEKNGV 116

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++ S       + + E +S+   + +IG      +L  +LV   Y++       G F   
Sbjct: 117 LITSISGLRLLLPNPEVFSKSQYKFEIGQECYLDKLSKNLVNLGYQKVSQVFSPGEFSQR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++IF    ++  +R+  FG++I+ I +F   T + ++ +E+++I      +      
Sbjct: 177 GDILDIFEM-TQEYPYRLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDIILQDADF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
             A    K++L+  L          E QR      Y  E+L  T +     +  R+L+  
Sbjct: 236 ERA----KKKLEGYL------VTASEVQR-----AYLSEVLSATENHFKHSDIRRFLSIF 280

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E    + +YIPE + LFVD+    + + + +            + G    S ++   
Sbjct: 281 YEKE--WGILDYIPEGTPLFVDDFQKIVDRNAKLDLEIASLLTEDLQQGKS-HSSLNYFS 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             +++    +P T   +   G   L+  +     Q             ++    Q   + 
Sbjct: 338 DPYKQLRQYQPATFFSNFHKGLGNLKFDKLHHFTQYG-----------MQEFFNQFPLLV 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEIN   + G  +LL V +++    L E L E  +    + S+           D+   +
Sbjct: 387 DEINRYKKAGATVLLQVDSQKGLNLLQENLKEYGLD--LIISDK---------NDIAPKE 435

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKE 662
             ++VG   L  G    +  +V I + +  
Sbjct: 436 SQLIVGH--LSNGFYFADEKIVLITEREIY 463



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     T    V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPGLVREAIIREIDRGG 821

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L E        ++H ++  ++    + D   G +DVLV   +
Sbjct: 822 QVFYVYNKVDTIEQKVSELQELVPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTI 881

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DI     + + +AD  G L +   L   +GR+ R   + ++   D +   I  
Sbjct: 882 IETGVDISNVNTLFVENADHMG-LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEISE 938


>gi|77411312|ref|ZP_00787661.1| reticulocyte binding protein [Streptococcus agalactiae CJB111]
 gi|77162648|gb|EAO73610.1| reticulocyte binding protein [Streptococcus agalactiae CJB111]
          Length = 1165

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 94/510 (18%), Positives = 194/510 (38%), Gaps = 55/510 (10%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +     G+ +  + QL++G +G+ K   +A   E + +  +V+   +  + +L S+
Sbjct: 9   QNKVVRTWHSGLVTNSR-QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQNDSDKLSSD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    + V  F +          VP  +           ++  +R        E+N  
Sbjct: 68  ISSLIGEDNVYQFFADD--------VPAAEFIFSSLDKSISRLSALRFL---KDPEKNGV 116

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++ S       + + E +S+   + +IG      +L  +LV   Y++       G F   
Sbjct: 117 LITSISGLRLLLPNPEVFSKSQYKFEIGQECYLDKLSKNLVNLGYQKVSQVFSPGEFSQR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++IF    ++  +R+  FG++I+ I +F   T + ++ +E+++I      +      
Sbjct: 177 GDILDIFEM-TQEYPYRLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDIILQDADF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
             A    K++L+  L          E QR      Y  E+L TT +     +  R+L+  
Sbjct: 236 ERA----KKKLEGYL------VTASEVQR-----AYLSEVLSTTENHFKHSDIRRFLSIF 280

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E    + +YIPE + LFVD+    + + + +            + G    S ++   
Sbjct: 281 YEKE--WGILDYIPEGTPLFVDDFQKIVDRNAKLDLEIASLLTEDLQQGKS-HSSLNYFS 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             +++    +P T   +   G   L+  +     Q             ++    Q   + 
Sbjct: 338 DPYKQLRQYQPATFFSNFHKGLGNLKFDKLHHFTQYG-----------MQEFFNQFPLLV 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEIN   + G  +LL V +++    L E L E  +    + S+           D+   +
Sbjct: 387 DEINRYKKSGATVLLQVDSQKGLNLLQENLKEYGLD--LIISDK---------NDIVPKE 435

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKE 662
             ++VG   L  G    +  +V I + +  
Sbjct: 436 SQLIVGH--LSNGFYFADEKIVLITEREIY 463



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 4/178 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     T    V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPGLVREAIIREIDRGG 821

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +     L E        ++H ++  ++    + D   G +DVLV   +
Sbjct: 822 QVFYVYNKVDTIDQKVSELQELVPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTI 881

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DI     + + +AD  G L +   L   +GR+ R   + ++   D +   I  
Sbjct: 882 IETGVDISNVNTLFVENADHMG-LSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEISE 938


>gi|300214982|gb|ADJ79398.1| Transcription-repair coupling factor [Lactobacillus salivarius CECT
           5713]
          Length = 251

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 111/235 (47%), Gaps = 15/235 (6%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +   +L G+ GS KT  +AK+++  + P +++  +   A QL S+ +N      +E F  
Sbjct: 23  DGRHMLTGLVGSSKTLMIAKLLKDKKVPQLIVESDLYHAQQLQSDLENIIEDTRIELF-- 80

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGS 286
                      P  D  + + ++ + +    R SA  +L   N  IV+++V+ I   + S
Sbjct: 81  -----------PVEDMLVAEMATSSPEYRAQRVSALTALTSENPVIVITTVAGIRRFLPS 129

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           VE + Q  +QL+IG  V   EL   L +  Y R ++    G F + G  ++IFP   ++ 
Sbjct: 130 VEYWKQHEIQLEIGKEVNPAELEKKLFEMGYIRSNMVNAPGDFAIRGSIVDIFPLDADN- 188

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
            +R+  F  +I+ +  F     + I NV+ + I   + ++  +  L  A K IK+
Sbjct: 189 PYRIDFFDIEIDSMRTFDIANQRSIENVDQVTIIPATDFIASKEVLELASKKIKK 243


>gi|116628945|ref|YP_814117.1| transcription-repair coupling factor [Lactobacillus gasseri ATCC
           33323]
 gi|116094527|gb|ABJ59679.1| transcription-repair coupling factor [Lactobacillus gasseri ATCC
           33323]
          Length = 1165

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 84/510 (16%), Positives = 188/510 (36%), Gaps = 53/510 (10%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           +EK  LL GV     +  + +++   QRP I++  ++  A  L  E  N  P   V  F 
Sbjct: 22  KEKRSLLTGVNSGAFSAVLMQMLSTWQRPLILVEDSEDKAQLLLDELGNLLPDEMVFSF- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIG 285
                       P   T   + +  +      R    + L E+   IVV +   + Y + 
Sbjct: 81  ------------PVDATIATQTAVASPDELSQRLQTLKFLTEKRAGIVVITPQALQYKLS 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
               + +     K     +  EL +   +  Y+R++I    G F   GD ++++P   E+
Sbjct: 129 DPRDFIKAKQVFKPEAEFDLDELTAWFTQAGYRRENIVARPGEFARRGDILDVYPLDQEN 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+  FG++++ + EF   T + +   + + I      V     L+ A++ IK+++  
Sbjct: 189 -PVRIEFFGDEVDTVKEFDAATQRSLEEKDIVSIGPALDRVFSSRNLHEAIEKIKQDMNE 247

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
            +            + ++      +++LE  G  ++      YL  ++       L +Y+
Sbjct: 248 SIAN---------EENVKNHFVKAIDLLEADGLPENYAFLIDYLLPKS-----FNLVDYL 293

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
            ++ LL  D+       ++ +   +    +   + G  L S        FE+        
Sbjct: 294 DKNGLLLFDDWQAIKKNVADVDAQNEAFISEEIKAGAMLNSQKLR--HNFEQVVQKVKQA 351

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
            V+     S   +    +  +QI+  T       E++   +Q+  +  E+   A +G  +
Sbjct: 352 QVLF----SLFQKGMGRLKFDQILNFTTR-----EVQQFFSQMPLIKSELTRFANEGNTV 402

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           +L   +   A+ + + L +  + +  +  +    ++ +             + +     G
Sbjct: 403 VLQADSATRAKQIAQNLVDYGVDLPVVKPDQILAKKAQ-------------ITVGDFAHG 449

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             +P   LV + + +           I+T+
Sbjct: 450 FALPSLNLVYLTERELFNQRPHHRKRIKTL 479



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V + +    ++  
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPIQTYVMEEMPSVVREAVLREMKRNG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   L E     +  Y+H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFFLHNRIDDIDKVVSRLEELIPEAKIEYIHGRMSENQMEDIMYRFSRNEFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + + +AD  G L     L   IGR+AR
Sbjct: 885 IETGVDMPNVNTMIVENADHYG-LSQLYQLRGRIGRSAR 922


>gi|290579532|ref|YP_003483924.1| putative transcription-repair coupling factor [Streptococcus mutans
           NN2025]
 gi|254996431|dbj|BAH87032.1| putative transcription-repair coupling factor [Streptococcus mutans
           NN2025]
          Length = 1162

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 103/684 (15%), Positives = 230/684 (33%), Gaps = 126/684 (18%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I +  + + +  + QL++G + S K   +A   +  +   +++   +  A +L ++
Sbjct: 9   QNQKIKEWTEHLSAPTR-QLVMGFSSSSKALAIAAAYKQQKGKIVIVTSTQNEAEKLATD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +      V  F +          V   +     +   N +++ +       L +    
Sbjct: 68  LISLIGEEEVYQFFADD--------VAAAEFIFASQDKTNSRVESLNFL----LDKEKSG 115

Query: 273 IVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           I+++S+  I   + S ++Y     +LK+G+      ++  L    Y++       G F  
Sbjct: 116 ILMTSIVGIRILLPSPQNYQAAQFKLKVGEEYNLDNIIKQLSNIGYQKVAQVYNPGEFSK 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++I+  + +   +R+  FG++I+ I  F P   + + N+++  +  +   +     
Sbjct: 176 RGDILDIYEIN-QPYPYRLEFFGDEIDGIRTFDPDDQKSLSNLDSFILIPSDDIILTDSD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
            + A   +++ L      L+                Y  E+L  T      ++  ++L+ 
Sbjct: 235 FDQACYNLEKALITTNDSLQP---------------YLKEVLSVTKDHYRHQDVRKFLSF 279

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               E   TL  Y+P+ + LF D+    I Q       I+ +   D      ++      
Sbjct: 280 FYQKE--WTLLNYLPKQTPLFFDDFQRIIDQNSRFDLDIANLLTEDLQNSKAVSSL---- 333

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
            S   N    +++    +P T   +   G   L+        Q             ++  
Sbjct: 334 -SYFAN---NYKDLRHYQPATFFSNFHKGLGNLKFDYLYNFTQYP-----------MQEF 378

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + DEI    +  + +LL   +++    L + L   N  +    S+V  L + + 
Sbjct: 379 FNQFPLLIDEIKRYQKSEMTVLLQTDSQQSQGRLQKALQGYNFNLP--ISQVDNLLKKQA 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE----------GFLRSKTSL--- 671
                       + I  L  G    +  LV I + +             ++ +   L   
Sbjct: 437 Q-----------LTIGNLSTGFYFADEKLVLITEREIFHKKVKHKRRRSYISNAERLKDY 485

Query: 672 ------------IQTIGRAARNVNSKVI-LYADTITKSIQLA--IDETTRRREKQLEHNK 716
                       +  IGR       +V  ++ D +T   Q A  I     + E   ++  
Sbjct: 486 NELEKGDYVVHNVHGIGRFLGIETIEVSGVHRDYLTIQYQNADRISIPIEQIELLSKYVA 545

Query: 717 KHNINPQ--------------SVKEKIMEVIDPILLEDAATTNISI-------------D 749
                P+               V +++ ++ D +L   A  + +               D
Sbjct: 546 SDGKEPKINKLNDGRFQRVKQKVSKQVEDIADDLLKLYAERSRLKGFAFSPDDKNQEEFD 605

Query: 750 AQQLSLSKKKGKAHLKSLRKQMHL 773
                +  +     +K ++K M  
Sbjct: 606 NDFAYVETEDQLRSIKEVKKDMEK 629



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 10/175 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     T    + + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPSNRYPVQTYVMETNASVIREAIMREIDRGG 821

Query: 584 RIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +I      +  + K++AE L E + E NI   ++H ++  ++    + D   G++D+LV 
Sbjct: 822 QIFYIYNRVDTIDKKVAE-LRELIPEANI--GFVHGKMSEIQLENTLLDFISGEYDLLVT 878

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
             ++  G+DI     + I +AD  G L +   L   +GR+ R   + ++ + D I
Sbjct: 879 TTIIETGIDISNVNTLFIENADYMG-LSTLYQLRGRVGRSNRIAYAYLMYHPDKI 932


>gi|313889521|ref|ZP_07823167.1| transcription-repair coupling factor [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313122133|gb|EFR45226.1| transcription-repair coupling factor [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 1166

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 77/510 (15%), Positives = 183/510 (35%), Gaps = 55/510 (10%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   + + +    ++   QL++G++GS K   +A          I++  ++    +L S+
Sbjct: 9   QNKVLKEWMIN-STKVDRQLVMGLSGSSKALAIAANYRYQNGKLIIITSSQNELEKLASD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                    V  F +  D   P  ++  +   ++K  S  E +  +         E    
Sbjct: 68  LSALIGEADVYQFFA--DDVAPAEFIFSS---LDKSLSRIEALQFL------IDHEAKGI 116

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++ + +     + +  ++ +  +Q  +G+      L+  L +  Y++    I  G F   
Sbjct: 117 LLTTIIGLKILLPNPRTFQKYSLQFCVGNDYNLDHLVKKLAQIGYQKVSQVINPGEFSRR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++I+    +   +R+  FG++I+ I  F   + + I N+  I I   S  +  +   
Sbjct: 177 GDILDIYEV-RQANPYRMEFFGDEIDGIRSFDSDSQKSIENLREIMISPASEMILEKEDF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
           +  +  ++  L                    +  +Y  E+L  + +    ++  ++L+  
Sbjct: 236 SRGISNLESAL---------------HLINAESKSYVEEILAVSKNGYRHKDIGKFLSLF 280

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   TL +YIP+   +F D+    + + +       +        G   PS +    
Sbjct: 281 YDKE--WTLLDYIPKGVPIFFDDFQKILDKNASFDLEVANLLTEDLHQGKAFPS-LHYFA 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             +++    +P T   +   G   ++  +   + Q             ++    Q   + 
Sbjct: 338 DTYKDVRTYKPATFFSNFHKGLGNIKFDKLHQLTQYA-----------MQEFFNQFPLLI 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEIN   +    +L+ V +K+  E L + L + +  +  + +      +           
Sbjct: 387 DEINRYTKSNATVLIQVDSKQAYERLVKNLEDYHFDIPLVDNGHIQAHQ----------- 435

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKE 662
             V + I  L  G    +  +  I + +  
Sbjct: 436 --VQMVIGQLTNGFYFADEKVAYITEHEIY 463



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     T    V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPSLVREAILREMDRGG 821

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +     L E        ++H ++  ++    + D   G +DVLV   +
Sbjct: 822 QVFYVYNKVDTIDKKVSQLQELVPEAAIGFVHGQMSEIQLENTLIDFINGDYDVLVATTI 881

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + + +AD  G L +   L   +GR+ R      I YA  + +  ++  
Sbjct: 882 IETGVDISNVNTLFVENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKVLS 934

Query: 702 DETTRRRE 709
           + + +R E
Sbjct: 935 EISDKRLE 942


>gi|304385533|ref|ZP_07367877.1| transcription-repair coupling factor [Pediococcus acidilactici DSM
           20284]
 gi|304328037|gb|EFL95259.1| transcription-repair coupling factor [Pediococcus acidilactici DSM
           20284]
          Length = 1165

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 81/522 (15%), Positives = 188/522 (36%), Gaps = 50/522 (9%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+ ++   + ++ + QL+ G+    K   +  +++   +P +V+  +   A +LY+E  
Sbjct: 11  KAVVEVTSNLGAQTR-QLVTGLLEPAKQLFLNALLQKQNQPILVVTDSLAHAERLYNELA 69

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
                    +F             P  +    + ++ +      R     +L  +   I 
Sbjct: 70  EGQLDLQAYWF-------------PAEEIIAAEVATSSPNYRTARVRFLNALANQQRGIY 116

Query: 275 VSSVSCIYGIGSVE-SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S S    +        Q  +++ +G+  + ++L+  LV+  Y+R +    +  F V G
Sbjct: 117 VTSASGFRRMVPAAADVKQAQLEISVGEEYDPQQLIQQLVQLGYQRVEQVEKKSEFAVRG 176

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++IFP + +DV  RV  F  +++ +  F     + I N+   KI   +  +      +
Sbjct: 177 SIVDIFPLN-QDVPVRVDFFDVEVDSLRTFDQNNQRSIENITQTKILPATDLIVTEEQFH 235

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             +     +L+ ++ +  K       + L+Q I    E  +          Y++ L    
Sbjct: 236 QGI----AKLQKQVQQARKRLDEDNQELLQQNIAEVTERWQKHQIIPEDVIYTKQLY--- 288

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
               P +L +Y+  D +L VD+    +     + + +        +    L    DN PL
Sbjct: 289 --AKPNSLLDYL-ADGVLVVDDYPRILDAELDIQKNEASWIVDQLKNNVLL----DNDPL 341

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
             E         I     P  +     +G+   +  + T +      ++    Q+  +  
Sbjct: 342 GLE-----IRQLIRQKKQPQIFLSMFQKGMGRLKFDQLTEITTR--AVQEFFGQMPVLKG 394

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E+     +   +L+   +K     +   L            + +   R      +  G  
Sbjct: 395 EVERWMSRHATVLIFANSKERQSKIASTLR-----------DFEIESRTVQADRIVTGAV 443

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +++       +G ++P+  +V + + +    +R K    Q I
Sbjct: 444 NII--GQSFSQGFEMPDAKMVVLTEKELFAKVRKKRPRQQHI 483



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 69/176 (39%), Gaps = 4/176 (2%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I    ++  
Sbjct: 769 VLTLTATPIPRTLNMSMIGVRDLSVIETPPTNRYPIQTYVVEENAGIIREGIMREIRRDG 828

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  E +   +       R  Y+H ++   +  +I+ D   G++DVLV   +
Sbjct: 829 QVFFLHNRVQDIEKVVAQIEALVPEARVAYIHGQMTEKQLEDILFDFIEGEYDVLVTTTI 888

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  G+DIP    + + +AD  G L     L   IGR++R   +  +   D +   +
Sbjct: 889 IETGIDIPNANTLFVENADHMG-LSQLYQLRGRIGRSSRVAYAYFLYQKDRVLTEL 943


>gi|21909542|ref|NP_663810.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes MGAS315]
 gi|21903722|gb|AAM78613.1| putative transcription-repair coupling factor [Streptococcus
           pyogenes MGAS315]
          Length = 1139

 Score =  171 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 85/528 (16%), Positives = 188/528 (35%), Gaps = 66/528 (12%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           +G++GS K   +A      Q+  +V+   +    +L S+  +      V  F  + D   
Sbjct: 1   MGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFADDVA 58

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
              ++  +   ++K  S  E +  +R+       +    ++VS       + + + +++ 
Sbjct: 59  AAEFIFAS---MDKALSRIETLQFLRNP------KSQGVLIVSLSGLRTLLPNPDVFTKS 109

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            +QL +G+  +   L   L+   Y++    I  G F   GD ++I+    +++ +R+  F
Sbjct: 110 QIQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRLEFF 168

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
           G+DI+ I +F+P T +    +E + I   S  +         ++     L+  L   + +
Sbjct: 169 GDDIDSIRQFHPETQKSFEQLEGVFINPASDLIFEASDFQRGIEQ----LEKALQTAQDD 224

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
            +      L           +     + I  +          E   +L +YIP+ + +F 
Sbjct: 225 KKSYLEDVLAVS--------KNGFKHKDIRKFQSLFY-----EKEWSLLDYIPKGTPIFF 271

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
           D+    + + +       +      + G  L S ++     + E    +P T   +   G
Sbjct: 272 DDFQKLVDKNARFDLEIANLLTEDLQQGKAL-SNLNYFADNYRELRHYKPATFFSNFHKG 330

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
              ++  Q   + Q             ++    Q   + DEI    +    +++ V ++ 
Sbjct: 331 LGNIKFDQMHQLTQYA-----------MQEFFNQFPLLIDEIKRYQKNQTTVIVQVESQY 379

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L +   +   R+  + S  + + R               + I  +  G    +  L
Sbjct: 380 AYERLEKSFQDYQFRLPLV-SANQIVSRESQ------------IVIGAISSGFYFADEKL 426

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
             I                + I R AR  N   I  A+ +    +LA+
Sbjct: 427 ALI---------TEHEIYHKKIKRRARRSN---ISNAERLKDYNELAV 462



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          V + I     +G 
Sbjct: 734 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGG 793

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +I          E    +L E + E +I   ++H ++  ++    + D   G +DVLV  
Sbjct: 794 QIFYVYNKVDTIEKKVAELQELVPEASI--GFVHGQMSEIQLENTLIDFINGDYDVLVAT 851

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I +AD  G L +   L   +GR+ R      I YA  + +  ++
Sbjct: 852 TIIETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKV 904

Query: 700 AIDETTRRRE 709
             + + +R E
Sbjct: 905 LTEVSEKRLE 914


>gi|7650358|gb|AAF66010.1|AF228519_1 UvrB [Aliivibrio fischeri]
          Length = 165

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/164 (42%), Positives = 101/164 (61%), Gaps = 10/164 (6%)

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           D+PE  LVAILDADKEGFLRS+ SLIQTIGRAARN+  K ILYAD IT S++ AI ET R
Sbjct: 1   DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLEGKAILYADKITGSMEKAIGETER 60

Query: 707 RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS----------IDAQQLSLS 756
           RREKQ  HN+   I PQ++K+ + ++++   +       ++            A   ++S
Sbjct: 61  RREKQQLHNEALGIVPQALKKDVADILELGDMTKNKRKVVAPKIKLSEVAEEGASYSAMS 120

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQ 800
            ++ +  ++ L  +M+  A +L FE+AA++RDEI  L+      
Sbjct: 121 PQQLEKAIQKLESKMYQHAKDLEFEQAAQVRDEIDNLRKQFIVN 164


>gi|270290199|ref|ZP_06196425.1| transcription-repair coupling factor [Pediococcus acidilactici 7_4]
 gi|270281736|gb|EFA27568.1| transcription-repair coupling factor [Pediococcus acidilactici 7_4]
          Length = 1165

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 82/522 (15%), Positives = 192/522 (36%), Gaps = 50/522 (9%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+ ++   + ++ + QL+ G+    K   +  +++   +P +V+  +   A +LY+E  
Sbjct: 11  KAVVEVTSNLGAQTR-QLVTGLLEPAKQLFLNALLQKQNQPILVVTDSLAHAERLYNELA 69

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
                    +F             P  +    + ++ +      R     +L  +   I 
Sbjct: 70  EGQLDLQAYWF-------------PAEEIIAAEVATSSPNYRTARVRFLNALANQQRGIY 116

Query: 275 VSSVSCIYGIGSVE-SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S S    +        Q  +++ +G+  + ++L+  LV+  Y+R +    +  F V G
Sbjct: 117 VTSASGFRRMVPAAADVKQAQLEISVGEEYDPQQLIQQLVQLGYQRVEQVEKKSEFAVRG 176

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++IFP + +DV  RV  F  +++ +  F     + I N+   KI   +  +      +
Sbjct: 177 SIVDIFPLN-QDVPVRVDFFDVEVDSLRTFDQNNQRSIENITQTKILPATDLIVTEEQFH 235

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             +  +++++      L+++ + L    L+Q I    E  +          Y++ L    
Sbjct: 236 QGIAKLQKQVHQARKRLDEDNQEL----LQQNIAEVTERWQKHQIIPEDVIYTKQLY--- 288

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
               P +L +Y+  D +L VD+    +     + + +        +    L    DN PL
Sbjct: 289 --AKPNSLLDYL-ADGVLVVDDYPRILDAELDIQKNEASWIVDQLKNNVLL----DNDPL 341

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
             E         I     P  +     +G+   +  + T +      ++    Q+  +  
Sbjct: 342 GLE-----IRQLIRQKKQPQIFLSMFQKGMGRLKFDQLTEITTR--AVQEFFGQMPVLKG 394

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E+     +   +L+   +K     +   L            + +   RI     +  G  
Sbjct: 395 EVERWMSRHATVLIFANSKERQSKIASTLR-----------DFEIESRIVQADRIVTGAV 443

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +++       +G ++P+  +V + + +    +R K    Q I
Sbjct: 444 NII--GQSFSQGFEMPDAKMVVLTEKELFAKVRKKRPRQQHI 483



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 69/176 (39%), Gaps = 4/176 (2%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        P++          + + I    ++  
Sbjct: 769 VLTLTATPIPRTLNMSMIGVRDLSVIETPPTNRYPIQTYVVEENAGIIREGIMREIRRDG 828

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  E +   +       R  Y+H ++   +  +I+ D   G++DVLV   +
Sbjct: 829 QVFFLHNRVQDIEKVVAQIEALVPEARVAYIHGQMTEKQLEDILFDFIEGEYDVLVTTTI 888

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  G+DIP    + + +AD  G L     L   IGR++R   +  +   D +   +
Sbjct: 889 IETGIDIPNANTLFVENADHMG-LSQLYQLRGRIGRSSRVAYAYFLYQKDRVLTEL 943


>gi|238853544|ref|ZP_04643916.1| transcription-repair coupling factor [Lactobacillus gasseri 202-4]
 gi|238833840|gb|EEQ26105.1| transcription-repair coupling factor [Lactobacillus gasseri 202-4]
          Length = 1165

 Score =  170 bits (431), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 84/510 (16%), Positives = 188/510 (36%), Gaps = 53/510 (10%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           +EK  LL GV     +  + +++   QRP I++  ++  A  L  E  N  P   V  F 
Sbjct: 22  KEKRSLLTGVNSGAFSAVLMQMLSTWQRPLILVEDSEDKAQLLLDELGNLLPDEMVFSF- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIG 285
                       P   T   + +  +      R    + L E+   IVV +   + Y + 
Sbjct: 81  ------------PVDATIATQTAVASPDELSQRLQTLKFLTEKRAGIVVITPQALQYKLS 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
               + +     K     +  EL +   +  Y+R++I    G F   GD ++++P   E+
Sbjct: 129 DPRDFIKAKQVFKPEAEFDLDELTAWFTQAGYRRENIVARPGEFARRGDILDVYPLDQEN 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+  FG++++ + EF   T + +   + + I      V     L+ A++ IK+++  
Sbjct: 189 -PVRIEFFGDEVDTVKEFDAATQRSLEEKDIVSIGPALDRVFSSRNLHEAIEKIKQDMNE 247

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
            +            + ++      +++LE  G  ++      YL  ++       L +Y+
Sbjct: 248 SIAN---------EENVKNYFVKAIDLLEADGLPENYAFLIDYLLPKS-----FNLVDYL 293

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
            ++ LL  D+       ++ +   +    +   + G  L S        FE+        
Sbjct: 294 DKNGLLLFDDWQAIKKNVADVDAQNEAFISEEIKAGAMLNSQKLR--HNFEQVVQKVKQA 351

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
            V+     S   +    +  +QI+  T       E++   +Q+  +  E+   A +G  +
Sbjct: 352 QVLF----SLFQKGMGRLKFDQILNFTTR-----EVQQFFSQMPLIKSELTRFANEGNTV 402

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           +L   +   A+ + + L +  + +  +  +    ++ +             + +     G
Sbjct: 403 VLQADSATRAKQIAQNLVDYGVDLPVVKPDQILAKKAQ-------------ITVGDFAHG 449

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             +P   LV + + +           I+T+
Sbjct: 450 FALPSLNLVYLTERELFNQRPHHRKRIKTL 479



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V + +    ++  
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPTNRYPIQTYVMEEMPSVVREAVLREMKRNG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   L E     +  Y+H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFFLHNRIDDIDKVVSRLEELIPEAKIEYIHGRMSENQMEDIMYRFSRNEFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + + +AD  G L     L   IGR+AR
Sbjct: 885 IETGVDMPNVNTMIVENADHYG-LSQLYQLRGRIGRSAR 922


>gi|71902673|ref|YP_279476.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS6180]
 gi|71801768|gb|AAX71121.1| transcription-repair coupling factor [Streptococcus pyogenes
           MGAS6180]
          Length = 1167

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 85/549 (15%), Positives = 191/549 (34%), Gaps = 67/549 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +     G+ +    QL++G++GS K   +A      Q+  +V+   +    +L S+
Sbjct: 9   QNKKVQSWHSGLTT-LGRQLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +      V  F +          V   +           +I+ ++        +    
Sbjct: 68  LSSLLDEELVFQFFADD--------VAAAEFIFASMDKALSRIETLQFLGN---PKSQGV 116

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++VS       + + + +++  +QL +G+  +   L   L+   Y++    I  G F   
Sbjct: 117 LIVSLSGLRTLLPNPDVFTKSQIQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRR 176

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++I+    +++ +R+  FG+DI+ I +F+P T +    +E + I   S  +      
Sbjct: 177 GDILDIYEI-TQELPYRLEFFGDDIDSIRQFHPETQKSFEQLEGVFINPASDLIFEASDF 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              ++     L+  L   + + +      L           +     + I  +       
Sbjct: 236 QRGIEQ----LEKALQTAQDDKKSYLEDVLAVS--------KNGFKHKDIRKFQSLFY-- 281

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   +L +YIP+ + +F D+    + + +       +      + G  L S ++   
Sbjct: 282 ---EKEWSLLDYIPKGTPIFFDDFQKLVDKNARFDLEIANLLTEDLQQGKAL-SNLNYFA 337

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             + E    +P T   +   G   ++  Q   + Q             ++    Q   + 
Sbjct: 338 DNYRELRHYKPATFFSNFHKGLGNIKFDQMHQLTQYA-----------MQEFFNQFPLLI 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           DEI    +    +++ V ++   + L +   +   R+  + S  + + R           
Sbjct: 387 DEIKRYQKNQTTVIVQVESQYAYKRLEKSFQDYQFRLPLV-SANQIVSRESQ-------- 437

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
               + I  +  G    +  L  I           +    + I R AR  N   I  A+ 
Sbjct: 438 ----IVIGAISSGFYFADEKLALI---------TEREIYHKKIKRRARRSN---ISNAER 481

Query: 693 ITKSIQLAI 701
           +    +LA+
Sbjct: 482 LKDYNELAV 490



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGG 821

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +I          E    +L E + E +I   ++H ++  ++    + D   G +DVLV  
Sbjct: 822 QIFYVYNKVDTIEKKVSELQELVPEASI--GFVHGQMSEIQLENTLIDFINGDYDVLVAT 879

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I +AD  G L +   L   +GR+ R      I YA  + +  ++
Sbjct: 880 TIIETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKV 932

Query: 700 AIDETTRRRE 709
             + + +R E
Sbjct: 933 LTEVSEKRLE 942


>gi|209558593|ref|YP_002285065.1| Transcription-repair coupling factor [Streptococcus pyogenes NZ131]
 gi|209539794|gb|ACI60370.1| Transcription-repair coupling factor [Streptococcus pyogenes NZ131]
          Length = 1139

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 162/435 (37%), Gaps = 41/435 (9%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           +G++GS K   +A      Q+  +V+   +    +L S+  +      V  F  + D   
Sbjct: 1   MGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELV--FQFFADDVA 58

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
              ++  +   ++K  S  E +  +R+       +    ++VS       + + + +++ 
Sbjct: 59  AAEFIFAS---MDKALSRIETLQFLRNP------KSQGVLIVSLSGLRTLLPNPDVFTKS 109

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            +QL +G++ +   L   L+   Y++    I  G F   GD ++I+    +++ +R+  F
Sbjct: 110 QIQLTVGENYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEI-TQELPYRLEFF 168

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
           G+DI+ I +F+P T +    +E I I   S  +         ++     L+  L   + +
Sbjct: 169 GDDIDSIRQFHPETQKSFEQLEGIFINPASDLIFEASDFQRGIEQ----LEKALQTAQDD 224

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
            +      L           +     + I  +          E   +L +YIP+ + +F 
Sbjct: 225 KKSYLEDVLAVS--------KNGFKHKDIRKFQSLFY-----EKEWSLLDYIPKGTPIFF 271

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
           D+    + + +       +      + G  L S ++     + E    +P T   +   G
Sbjct: 272 DDFQKLVDKNARFDLEIANLLTEDLQQGKAL-SNLNYFTDNYRELRHYKPATFFSNFHKG 330

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
              ++  Q   + Q             ++    Q   + DEI    +    +++ V ++ 
Sbjct: 331 LGNIKFDQMHQLTQYA-----------MQEFFNQFPLLIDEIKRYQKNQTTVIVQVESQY 379

Query: 594 MAEDLTEYLYERNIR 608
             E L +   +   R
Sbjct: 380 AYERLEKSFQDYQFR 394



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          V + I     +G 
Sbjct: 734 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGG 793

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +I          E    +L E + E +I   ++H ++  ++    + D   G +DVLV  
Sbjct: 794 QIFYVYNKVDTIEKKVAELQELVPEASI--GFVHGQMSEIQLENTLIDFINGDYDVLVAT 851

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I +AD  G L +   L   +GR+ R      I YA  + +  ++
Sbjct: 852 TIIETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKI 904

Query: 700 AIDETTRRRE 709
             + + +R E
Sbjct: 905 LTEVSEKRLE 914


>gi|195977163|ref|YP_002122407.1| transcription-repair coupling factor [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195973868|gb|ACG61394.1| transcription-repair coupling factor [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 1164

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 94/534 (17%), Positives = 195/534 (36%), Gaps = 68/534 (12%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           +Q  +I      + S  K QL++G++GS K   +A    + Q   +V+   +    +L  
Sbjct: 8   NQNKSIQTWQCDVTS-LKRQLVMGLSGSSKAAAIASAYLSFQGKLVVVTSTQNDMEKLAG 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE--SSINEQIDRMRHSATRSLLER 269
           +        ++  F                DT   +   SS+++ I R+   A  S  E 
Sbjct: 67  DLSTLLDEGSIFQFF-------------ADDTAAAEFIFSSMDKTISRIEALAFLSNPEA 113

Query: 270 NDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
              +V+S       + S +++ Q  + L +G   +  +++  LVK  Y+R    +  G F
Sbjct: 114 RGILVISLAGLRILLPSPKTFQQGQIDLAVGVDTDLDKIVKKLVKIGYQRVAQVLSPGEF 173

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
              GD ++++    +D+  R+  FG++I+ I  F   + + ++  ++  I   S  +   
Sbjct: 174 SRRGDILDVYEV-TQDLPVRIEFFGDEIDGIRSFDIESQKSLQKKDSTSIKPASDMIFEP 232

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
              + A   ++++L  +L + E +G L E           L + +     + I  +    
Sbjct: 233 EDFDRASHNLEKQL--QLAKAEHKGYLEE----------LLTVTKEGLKHKDIRKFQSLF 280

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
                     T+ +Y+P+ + +F D+    + + +       H      + G  LP  + 
Sbjct: 281 YDNE-----WTILDYLPKGTPVFFDDFQKLVDRNATFDLELAHLLTDDLQQGKSLP-FLH 334

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
                + E    +P T   +   G   ++  +   + Q             ++    Q  
Sbjct: 335 YFADNYRELRHYKPATFFSNFHKGLGNIKFDKVHSLTQYA-----------MQEFFNQFP 383

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + DEI    + G  +LL V + +  E L + L     ++  + +E   L + +      
Sbjct: 384 LLIDEIKRYQKSGATVLLQVESHQAYERLAKSLETYQCQLPLVSAEAIVLRQAQ------ 437

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
                  + I  L  G    +  LV I                + + R AR  N
Sbjct: 438 -------IIIGHLAGGFYFADEKLVLI---------TEHEIYHKRLKRRARRTN 475



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 81/191 (42%), Gaps = 16/191 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          + + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLIREAIIREMDRGG 821

Query: 584 RIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++      +  + K++AE L E + E +I   ++H ++  ++    + D   G +DVLV 
Sbjct: 822 QVFYVYNKVDTIDKKVAE-LQELVPEASI--GFVHGQMSDIQLENTLMDFINGDYDVLVA 878

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DI     + I +AD  G L +   L   +GR+ R      I YA  + K  +
Sbjct: 879 TTIIETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYKPDK 931

Query: 699 LAIDETTRRRE 709
           +  + + +R E
Sbjct: 932 VLTEVSEKRLE 942


>gi|293380357|ref|ZP_06626428.1| transcription-repair coupling factor [Lactobacillus crispatus
           214-1]
 gi|290923040|gb|EFD99971.1| transcription-repair coupling factor [Lactobacillus crispatus
           214-1]
          Length = 1164

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 81/508 (15%), Positives = 187/508 (36%), Gaps = 53/508 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + ++   +  P I++  N+  A  LY E         V+ F   
Sbjct: 24  KNSLITGANAGAFSLLLKQITTKLAAPLILIEENESKAQNLYGELSAIMADETVQIF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                     P   T   + +  +      R  A   LL     IVV++   + Y + + 
Sbjct: 81  ----------PVDATIATQTAVSSPDELSSRIQALNFLLSGKAGIVVTTPQGLQYKLTNP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             ++Q     + G   E KEL   L+   Y+R  + +  G F + GD ++++P   E+  
Sbjct: 131 TDFTQAKRSFEPGQEYELKELNEWLLASGYQRDSLVVRPGEFAIRGDILDVYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ I EF   + +  + ++ +++ A    V  +  +  A K I++++    
Sbjct: 190 VRIEFFGDEIDTIKEFDLASQRSQKELDKVEVAAAQDRVFTKDAIAAAAKKIEQDMA--- 246

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                      A+ ++      L+ L   G  ++      YL      E   +L EY+P+
Sbjct: 247 ------NAPAPAKAVKDHFAAVLDELSDGGLPKNYAFLIDYLL-----EISSSLLEYLPK 295

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           +  +  D+  +    +  + + +        + G  LP     R    +  +  +   I 
Sbjct: 296 NGQILFDDLPLINQAVETVDKQNAAFINDELKTGAMLPGQSL-RSDYTKILSKDKHHRIY 354

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
            S        ++  G +    +      +P        +Q+  +  E+    + G  ++L
Sbjct: 355 FSL------FQRSMGRLRLGQMLNWSTREPEQ----FFSQMPLIKSELESYQKAGQTVIL 404

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
               ++ A+ + + + +  + +  + ++    +R +             + ++    G  
Sbjct: 405 QADNEKRAQQIDQTMVDFGLNLPIVGADEIVEQRTQ-------------IVVDGFVSGFS 451

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTI 675
           +P   LV + + +       +   I+T+
Sbjct: 452 LPTVKLVYLTERELFNKRPQRKKRIKTL 479



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      + +  +  T   +          Q+  V  D      Q+  
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPIQTYVMEQIPSVVRDACLREMQRDG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          ++  E L E   + R    H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFYLHNRISDIDETVEKLQELMPQARIAAAHGRMSQNQLEDILYRFLNREFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 885 IETGIDMPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 922


>gi|289432962|ref|YP_003462835.1| transcription-repair coupling factor [Dehalococcoides sp. GT]
 gi|288946682|gb|ADC74379.1| transcription-repair coupling factor [Dehalococcoides sp. GT]
          Length = 1148

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 86/465 (18%), Positives = 166/465 (35%), Gaps = 56/465 (12%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P  DQ  +   L + +   E    +L    +G+ F++A V   ++ P +V+      A +
Sbjct: 8   PLIDQSPSFNSLFESLDRGEADISVL---DAGRGFSLAAVYRKLKCPMLVITSQPERARE 64

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L  +   +               YQ               S  N  +++MR +       
Sbjct: 65  LLEQIAAYSGEEPGFLPDPSLLPYQ------------RAVSDRNSSLEKMRLAGILGGFI 112

Query: 269 RN---DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           R+     IV +  + +      + + Q  VQ+  G   E + L+    +  Y+++ I  +
Sbjct: 113 RSGDARIIVTAVPALLQRYIFPKVFEQSFVQVWTGLETEPQNLICHFQQLGYRQESIVEM 172

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
            GT+   G  ++IFP H ED   R+  FGN +E +  F P + +  + V  + I   S  
Sbjct: 173 PGTYSHRGGILDIFP-HTEDNPVRLEFFGNTLESLRNFDPQSQRSGKQVNELTISPASEI 231

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
                      +  ++ELK +L  L  +    E  R    ++ D+  L+     +  E +
Sbjct: 232 FHLG-------QLPRQELKNKLDALLTDNLNPEFSR---TLSADINHLQEGLKPEYPEFF 281

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505
           +             ++ +Y+P D+L+ +DE          + +     ++     G  LP
Sbjct: 282 APLFN-------TSSILDYLPADALVVLDEPASIEQAAFHLDKEAEELRSDRLSQG-ELP 333

Query: 506 SCMDNRPLRF-EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           S        + E    L+    ++ A           G   E +       D  V     
Sbjct: 334 SVYPRPYFSWAEISEMLKTKKRLIMA---------SFGRESESLKLDFASPDNYV----- 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
             ++  +Y+++        R+++       A  LTE L E  I  
Sbjct: 380 -GRLSSLYEKLPELKGHAGRVVIVS---HQAARLTELLAEEGIST 420



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 17/191 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           E +  LR     + +SATP    L         +  I  P G   P   + +A    E +
Sbjct: 747 EFFKKLRAQVDVLTLSATPIPRTLHMSMVGVRDMSIIETPPGERLPIKTVVAAFD--ERL 804

Query: 572 YDEINLAAQQGLRILLTVLTKRMA-----EDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
             E  L   +    +  V  + M      E + + + E  I +   H ++   +   ++ 
Sbjct: 805 IREAILREMERNGQVFFVNNRVMGINLLAERIQQLVPEARIGIG--HGQMAEEKLAAVMA 862

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D    + DVLV   ++  G+D+P    + I  AD+ G     T L Q  GR  R+     
Sbjct: 863 DFVRHELDVLVCTTIIESGVDVPNANTLIINRADRFGL----TQLYQLRGRVGRSSQLAY 918

Query: 687 ILYADTITKSI 697
             +     K +
Sbjct: 919 AYFLYEKEKRL 929


>gi|317133014|ref|YP_004092328.1| transcription-repair coupling factor [Ethanoligenens harbinense
           YUAN-3]
 gi|315470993|gb|ADU27597.1| transcription-repair coupling factor [Ethanoligenens harbinense
           YUAN-3]
          Length = 1179

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 93/540 (17%), Positives = 184/540 (34%), Gaps = 81/540 (15%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A   L   + +     ++ G++G  K   +  +     R A+++A ++  AA++  + +
Sbjct: 12  PAYRDLEASVKAGVLPAVVTGLSGVHKAHLIYALCSHTGRRALLLAADEQEAARMRDDLE 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            FF    +                P  D  +    S++ + +  R      +   +  +V
Sbjct: 72  QFFGGGVLV--------------CPARDLTLRPVESVSREFEHERLRVMGRMALGDYRVV 117

Query: 275 VSSVSCIYGIGSVESYSQM-IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+       +   +   +   + ++ G  +  +  + +L+   Y R +     G F   G
Sbjct: 118 VACADAAMQLTMPKEVYRARSLPVESGKMLSPERAVDALLAAGYVRTEQVEGMGQFARRG 177

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++ FP   E+   RV  +G++ + +S F P T ++    E + I            L 
Sbjct: 178 GIVDFFPP-QEETPVRVEFWGDEPDTVSHFDPETQRRTEPAEGVCITPAVEVGFAPQDLQ 236

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
           +A   I++ L     +                   DLE LE+  +  + + Y      R 
Sbjct: 237 SA---IRKLLDGTAGKARGS------------FEKDLERLESGVAVAATDRYLSLCYDR- 280

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
               P +LF+Y  +D+LLFV E+     +            + L   G   P  +D   L
Sbjct: 281 ----PVSLFDY-ADDALLFVSETARVRERAKNTLWQAGEDVSALLADGILAPG-LDTYYL 334

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ------ 567
            +       P  +         ++++   ++++   R T  V     +     Q      
Sbjct: 335 DW-------PQVL--------QQMDRHDTVLLDTFARATYEVAARGRLAIVSKQFSLWSG 379

Query: 568 -VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            +  + +++  A   G R ++   T + +E+L   L +  I       +   L       
Sbjct: 380 GLAALKEDLVPALDVGGRAVVLAGTGKNSENLARELAKEGISAVSAQGKDAALP------ 433

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG-RAARNVNSK 685
             R G   VL     L  G   P+ G            L S     QT G R  R   +K
Sbjct: 434 -ARGG---VLTLPGRLSAGFSYPDIGFS----------LFSYGGQTQTTGQRLHRKRKNK 479



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 69/195 (35%), Gaps = 10/195 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI    +I        PV+          + D +    ++G 
Sbjct: 766 VLTLSATPIPRTLNMAMSGIRDMSVIEEAPQDRHPVQTYVLEHDWGVLADAVRRELRRGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L+      R    H ++       +   L   + DVLV   +
Sbjct: 826 QVYYLHNRVESIEGTAAKLHALVPDARVGIAHGKMDEETLSRVWEKLLGNELDVLVCTTI 885

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P C  + I DAD  G  +    L Q  GR  R+       +     K++    
Sbjct: 886 IETGVDVPNCNTLIIEDADHMGLSQ----LHQIRGRVGRSSRRAFAYFTFRRGKALS--- 938

Query: 702 DETTRRREKQLEHNK 716
           D  T+R E   E+ +
Sbjct: 939 DIATKRLEAIREYTE 953


>gi|148239816|ref|YP_001225203.1| transcription-repair coupling factor [Synechococcus sp. WH 7803]
 gi|147848355|emb|CAK23906.1| Transcription-repair coupling factor [Synechococcus sp. WH 7803]
          Length = 1180

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 90/513 (17%), Positives = 185/513 (36%), Gaps = 64/513 (12%)

Query: 153 QPAAIA-QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           Q +A++ +L + I   +++ LL G   + +    + +     RP +V+ P    A +  +
Sbjct: 11  QTSALSGELCERIERSDRL-LLRGAGRAARALVASAMARHQDRPLLVVVPTLEEAGRWTA 69

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
             +     +A  Y  S    Y+P  + P ++    +   ++E          +   +  D
Sbjct: 70  LLELMGWRSAQLYPTSEGSPYEP--FDPTSEITWGQLQVLSE---------LQVEGQSRD 118

Query: 272 CIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             +V++  C+   +   +  +     L+ GDS++ + L  SL +  Y+R       GT+ 
Sbjct: 119 LAIVATERCLQPHLPPPQVLADRCRTLRKGDSIDLEALAVSLSQLGYERVSTIDQEGTWS 178

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
             GD +++FP   E +  R+  FG++++++ EF P + + +  ++++++           
Sbjct: 179 RRGDIVDVFPVSSE-LPVRLEFFGDELDKLREFDPASQRSLDPIDSLRLTPTGFSPLIAE 237

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                   ++E +   L +L  +  L E              L   G+ + +    R L 
Sbjct: 238 -------ALRESMPDGLDQLLSDQALNE--------------LLEGGTPEGM----RRLL 272

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
           G    E P +L +Y+P    + +DE           +      +  L      LP    +
Sbjct: 273 GLAWQE-PASLLDYLPAACCVAIDERRHGRSHGEQWFDHAEEHRGDL-----GLPLPRLH 326

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
           R +             + SA  G    +  +    +       L   PV       Q   
Sbjct: 327 RSIDQA--------MALASAFHG---FDLAELQEQDDHPNAFDLNSRPVPAYP--NQFGK 373

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + + I    QQ   + L       A  L   L E +   R++ +         ++     
Sbjct: 374 LGELIKGYQQQKQAVWLLSAQPSRAVAL---LEEHDCISRFVPNAADAGAIERLVEQSTP 430

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                    +L  EGL +P   +V I D +  G
Sbjct: 431 VALKTRGTADL--EGLQLPAWRVVLITDREFFG 461



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 17/195 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E +   I    
Sbjct: 760 VLTLSATPIPRTLYMSLSGVREMSLITT----PPPLRRPIKTHLAALDEEAIRSAIRQEL 815

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      ED+   L +    +++   H ++   E    +     G+ DV++
Sbjct: 816 DRGGQVFYVVPRVEGIEDVAAQLRQMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVML 875

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA + G  +    L   +GR+    ++ +    +      
Sbjct: 876 CTTIVESGLDIPRVNTILIEDAHRFGLAQ-LYQLRGRVGRSGIQAHAWLFYPGNASLSEA 934

Query: 698 QLAIDETTRRREKQL 712
                   R R  Q 
Sbjct: 935 AR-----QRLRAIQE 944


>gi|169824178|ref|YP_001691789.1| transcription-repair coupling factor [Finegoldia magna ATCC 29328]
 gi|167830983|dbj|BAG07899.1| transcription-repair coupling factor [Finegoldia magna ATCC 29328]
          Length = 1168

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/508 (16%), Positives = 177/508 (34%), Gaps = 52/508 (10%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           L  + +      + GV        +    + + +P +V+  + + A  L +E+ N    N
Sbjct: 18  LDSLSANNSSIYIHGVIKEAFASFVYATSKNINKPLVVVVEDNMRARNL-TEYLNDIEEN 76

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
             E+F             P  +       S+++  +  R +    LL     I+V++   
Sbjct: 77  ICEFF-------------PSRELNFYNAKSLDDNAEDQRVNVLFKLLNNEKFIIVTTFDA 123

Query: 281 I-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
           +   I       +    +K  D +  +EL   L   +Y+R D    +G F + G  ++IF
Sbjct: 124 LTKKITKKSVAKKYAFTIKDTDLINLEELQEKLRALKYERVDTIESKGQFAIRGGIVDIF 183

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P H      R+ +F ++I+ +  F   T + I + + + I + S  +       + +  I
Sbjct: 184 PVHS-RFPVRIELFDDEIDSMRFFEVSTQRSIEDCKFVDIISCSELIIEDSKKESIINSI 242

Query: 400 KEELKMRLIEL----EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++ L  R+         +    + ++L + I  DLE      SC        +LT ++  
Sbjct: 243 QKNLDKRVDHPIFGENVDNVKDKFEKLMEYIRSDLEYEIDLVSC--------FLTKKDYD 294

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
               T+F+Y  +D+++ +++            +        L E G  L S  +   +  
Sbjct: 295 ----TVFDYFADDTIMMIEDLSRCYDIYKEKEKRFLEDFVYLVEKGEVL-SKHEQSLIPI 349

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            +          V+ T                I          +E  +    ++ + + I
Sbjct: 350 SDILKFIKAKTSVNIT--------SLVKRTRLIESNAMYQLKTLEAPNFNKNIDSLVENI 401

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              + +G + ++          L +      I          TLE  +   +++  +  V
Sbjct: 402 KSNSLRGFKQIVFAANVERKNMLKDLFLTNGIP---------TLEAEDYNANIKSSQ--V 450

Query: 636 LVGINLLREGLDIPECGLVAILDADKEG 663
           L+    L  G +I +   + I   +  G
Sbjct: 451 LITQKNLPNGFEIKDPKYLIITYKEIFG 478



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 25/199 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVED-----VYDEINLA 578
            + +SATP    L+     +    IR   L++ P E R    T V +     + D I   
Sbjct: 777 VLTLSATPIPRTLQ-----MGLTGIRDMSLLEEPPEDRTPISTYVTEYNPSLIRDAIIRE 831

Query: 579 AQQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             +G +I          +     L E + E NI +   H  +   E   ++ D + G +D
Sbjct: 832 LDRGGQIYFVYNRIEDIDQMEFKLKELVPELNIAIA--HGRMNEKELENVMLDFQDGIYD 889

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  GLDI     + I +ADK G  +    L Q  GR  R+  +    +     
Sbjct: 890 LLLCTTIIETGLDIQNVNTMIIYNADKMGLSQ----LYQLKGRIGRSDRTSFAYFTY--- 942

Query: 695 KSIQLAIDETTRRREKQLE 713
              Q ++ E + +R   ++
Sbjct: 943 -EGQKSLTEISEKRLMAIK 960


>gi|257066460|ref|YP_003152716.1| transcription-repair coupling factor [Anaerococcus prevotii DSM
           20548]
 gi|256798340|gb|ACV28995.1| transcription-repair coupling factor [Anaerococcus prevotii DSM
           20548]
          Length = 1170

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/513 (15%), Positives = 182/513 (35%), Gaps = 54/513 (10%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + Q+   I        L G+T   K   +  + E  +   +++A N+  A  +Y +  N 
Sbjct: 14  VKQIENNIDD-YSPIYLSGLTDGFKPHLVLALFEKFKESLVIIAENEKRAE-IYLDSING 71

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              N    F             P  D       SI+ +    R      L +  + IV++
Sbjct: 72  IIENKAYLF-------------PSLDINFYNIKSIDNRKLSQRMEVLTKLAKGENFIVIT 118

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           ++  +   + +++ +++  V++K  D ++    + +L+   Y    +   +G F   G  
Sbjct: 119 TLKAMTNKLTTLDRFNKSFVKIKDEDIIDVNNFIENLINLNYTANSLVENKGDFAKRGSI 178

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+ +P   ++   R+ +F ++++ I  F   + + I  +   +I   +  +  +   +  
Sbjct: 179 IDFWPVSYDN-PVRIELFDDEVDSIRLFDKDSQRTIEKISEAEISPVTELIYSKDDYDKV 237

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +K I  E    ++ L+ + + +  Q+L  +       +E +    +I+  + Y       
Sbjct: 238 IKNINRE----IMSLDNDSKEINRQKLIDKYKQITAFIEESMFVSNIDLVNPY-----RK 288

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           +   +  +YIP+  L+F D+    I      Y   F   +   E      S    R L  
Sbjct: 289 DDYSSFLDYIPKSGLIFFDDVARVIEDYDNFYENFFEDLSLQMENNEVFKSFEHARILID 348

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           + +  +    I+   +     L++ +     +II         +E  +   +V+   D  
Sbjct: 349 DIYEQIDKFRIINLTS----ILKKSKLFNPRKIIEI-----KTIESENFNRRVDYFIDRT 399

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A    ++L+    ++ A  L +          Y+  +   + ++ I       K  +
Sbjct: 400 IELANSDKKVLILEGNEKTAFQLID---------AYLEKDFTQVSKVGIGESFE--KIPI 448

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            +       G          I D D   F   +
Sbjct: 449 QIANATSSSGY--------YIYDLDFYVFTHKE 473



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 70/196 (35%), Gaps = 21/196 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVED-----VYDEINLA 578
            + +SATP    L+          IR    +D   E R    T V +     +   I   
Sbjct: 775 VLTLSATPIPRTLQMSLSG-----IRDLSTLDEAPEERMPVNTYVLEYDNGIIKQAIERE 829

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +  ++          E L  +L E   +  +  +H  +   +  + + +   G+ D+L
Sbjct: 830 LNRNGQVYFVYNRVNDIEKLYNHLIELVPDANIAIIHGRISPKQIEKTMLEFIDGEIDIL 889

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +   ++  G+DI     + I D+D  G  +    L Q  GR  R   S    +     K 
Sbjct: 890 LSTTIIETGMDISNVNTIIIYDSDMMGLGQ----LYQLKGRIGRGNRSSYAYFTYRTGK- 944

Query: 697 IQLAIDETTRRREKQL 712
               + E + +R K +
Sbjct: 945 ---ILSEISEKRLKSI 957


>gi|225869494|ref|YP_002745441.1| transcription-repair coupling factor [Streptococcus equi subsp.
           equi 4047]
 gi|225698898|emb|CAW91884.1| putative transcription-repair coupling factor [Streptococcus equi
           subsp. equi 4047]
          Length = 1164

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 93/534 (17%), Positives = 194/534 (36%), Gaps = 68/534 (12%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           +Q  +I      + S  K QL++G++GS K   +A    + Q   +V+   +    +L  
Sbjct: 8   NQNKSIQTWQCDVTS-LKRQLVMGLSGSSKAAAIASAYLSFQGKLVVVTSTQNDMEKLAG 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE--SSINEQIDRMRHSATRSLLER 269
           +        ++  F                DT   +   SS+++ I R+   A  S  E 
Sbjct: 67  DLSALLDEGSIFQFF-------------ADDTAAAEFIFSSMDKTISRIEALAFLSNPEA 113

Query: 270 NDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
              +V+S       + S +++ Q  + L +G   +   ++  LVK  Y+R    +  G F
Sbjct: 114 RGILVISLAGLRILLPSPKTFQQGQIDLAVGVDTDLDNVVKKLVKIGYQRVAQVLSPGEF 173

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
              GD ++++    +D+  R+  FG++I+ I  F   + + ++  ++  I   S  +   
Sbjct: 174 SRRGDILDVYEV-TQDLPVRIEFFGDEIDGIRSFDIESQKSLQKKDSTSIKPASDMIFEP 232

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
              + A   ++++L  +L + E +G L E           L + +     + I  +    
Sbjct: 233 EDFDRASHNLEKQL--QLAKAEHKGYLEE----------LLTVTKEGLKHKDIRKFQSLF 280

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
                     T+ +Y+P+ + +F D+    + + +       H      + G  LP  + 
Sbjct: 281 YDNE-----WTILDYLPKGTPVFFDDFQKLVDRNAKFDLELAHLLTDDLQQGKSLP-FLH 334

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
                + E    +P T   +   G   ++  +   + Q             ++    Q  
Sbjct: 335 YFADNYRELRHYKPATFFSNFHKGLGNIKFDKVYSLTQYA-----------MQEFFNQFP 383

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + DEI    + G  +LL V + +  E L + L     ++  + ++   L + +      
Sbjct: 384 LLIDEIKRYQKSGATVLLQVESHQAYERLAKSLEAYQCQLPLVSADAIVLHQAQ------ 437

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
                  + I  L  G    +  LV I                + + R AR  N
Sbjct: 438 -------IIIGHLAGGFYFADEKLVLI---------TEHEIYHKRLKRRARRTN 475



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 81/191 (42%), Gaps = 16/191 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          + + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLIREAIIREMDRGG 821

Query: 584 RIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++      +  + K++AE L E + E +I   ++H ++  ++    + D   G +DVLV 
Sbjct: 822 QVFYVYNKVDTVDKKVAE-LQELVPEASI--GFVHGQMSDIQLENTLMDFINGDYDVLVA 878

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DI     + I +AD  G L +   L   +GR+ R      I YA  + K  +
Sbjct: 879 TTIIETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYKPDK 931

Query: 699 LAIDETTRRRE 709
           +  + + +R E
Sbjct: 932 VLTEVSEKRLE 942


>gi|225867624|ref|YP_002743572.1| transcription-repair coupling factor [Streptococcus equi subsp.
           zooepidemicus]
 gi|225700900|emb|CAW97563.1| putative transcription-repair coupling factor [Streptococcus equi
           subsp. zooepidemicus]
          Length = 1164

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 93/534 (17%), Positives = 194/534 (36%), Gaps = 68/534 (12%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           +Q  +I      + S  K QL++G++GS K   +A    + Q   +V+   +    +L  
Sbjct: 8   NQNKSIQTWQCDVTS-LKRQLVMGLSGSSKAAAIASAYLSFQGKLVVVTSTQNDMEKLAG 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE--SSINEQIDRMRHSATRSLLER 269
           +        ++  F                DT   +   SS+++ I R+   A  S  E 
Sbjct: 67  DLSALLDEGSIFQFF-------------ADDTAAAEFIFSSMDKTISRIEALAFLSNPEA 113

Query: 270 NDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
              +V+S       + S +++ Q  + L +G   +   ++  LVK  Y+R    +  G F
Sbjct: 114 RGILVISLAGLRILLPSPKTFQQGQIDLAVGVDTDLDNVVKKLVKIGYQRVAQVLSPGEF 173

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
              GD ++++    +D+  R+  FG++I+ I  F   + + ++  ++  I   S  +   
Sbjct: 174 SRRGDILDVYEV-TQDLPVRIEFFGDEIDGIRSFDIESQKSLQRKDSTSIKPASDMIFEP 232

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
              + A   ++++L  +L + E +G L E           L + +     + I  +    
Sbjct: 233 EDFDRASHNLEKQL--QLAKAEHKGYLEE----------LLTVTKEGLKHKDIRKFQSLF 280

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
                     T+ +Y+P+ + +F D+    + + +       H      + G  LP  + 
Sbjct: 281 YDNE-----WTILDYLPKGTPVFFDDFQKLVDRNAKFDLELAHLLTDDLQQGKSLP-FLH 334

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
                + E    +P T   +   G   ++  +   + Q             ++    Q  
Sbjct: 335 YFADNYRELRHYKPATFFSNFHKGLGNIKFDKVYSLTQYA-----------MQEFFNQFP 383

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + DEI    + G  +LL V + +  E L + L     ++  + ++   L + +      
Sbjct: 384 LLIDEIKRYQKSGATVLLQVESHQAYERLAKSLEAYQCQLPLVSADAIVLHQAQ------ 437

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
                  + I  L  G    +  LV I                + + R AR  N
Sbjct: 438 -------IIIGHLAGGFYFADEKLVLI---------TEHEIYHKRLKRRARRTN 475



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 81/191 (42%), Gaps = 16/191 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          + + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGLIREAIIREMDRGG 821

Query: 584 RIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++      +  + K++AE L E + E +I   ++H ++  ++    + D   G +DVLV 
Sbjct: 822 QVFYVYNKVDTIDKKVAE-LQELVPEASI--GFVHGQMSDIQLENTLMDFINGDYDVLVA 878

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DI     + I +AD  G L +   L   +GR+ R      I YA  + K  +
Sbjct: 879 TTIIETGVDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYKPDK 931

Query: 699 LAIDETTRRRE 709
           +  + + +R E
Sbjct: 932 VLTEVSEKRLE 942


>gi|295425671|ref|ZP_06818358.1| transcription-repair coupling factor [Lactobacillus amylolyticus
           DSM 11664]
 gi|295064687|gb|EFG55608.1| transcription-repair coupling factor [Lactobacillus amylolyticus
           DSM 11664]
          Length = 1165

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/508 (15%), Positives = 181/508 (35%), Gaps = 53/508 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + +++   +   +V+  N+  A  +++E         V+YF   
Sbjct: 24  KNSLITGANAGAFSLLLKQIVTEKKVSLLVIEENENKAQNIFNELSGIMDDGQVQYF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                     P   T   + +  +      R      LL +   +V+++   + Y + +V
Sbjct: 81  ----------PVDSTLATQTALASPDELSSRIQTLNFLLGQKSGVVITTPQGLQYKLSAV 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           + ++    +       +  E+   L+   Y R+ +    G F + GD ++I+P   E+  
Sbjct: 131 KDFAAFKREFVQDKEYDLGEMNKWLLAAGYHREALVARPGEFAIRGDILDIYPLDQEN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++++ I EF   T +  R ++ + +      V     ++ A   IK  +    
Sbjct: 190 VRIEFFGDEVDTIKEFDLSTQRSQREIKRLVVGPAQDRVFSADAISQAAAEIKAAMSESK 249

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
            + +               T  L+ L   G   +      +L  +     P +L +Y+ +
Sbjct: 250 ADQKAVKD---------HFTQVLDELNDGGLPSNYAFLIDFLIKK-----PSSLVDYLAK 295

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           D LLF+D+  +    +  + + +        + G  LP     R    +     R   I 
Sbjct: 296 DGLLFLDDLPLIKQAVETVDQQNQGFIDDELKIGALLPGQKL-RSDYTKVMTRDRHHRIY 354

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
            S        ++  G I  +  +         E   +  Q+  +  E+    + G  ++L
Sbjct: 355 FSL------FQRSMGRI--RFGQMLDWTTREPEQFFS--QMPLIRTELESYYKSGQTVVL 404

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
                + A+ + + + + ++ +  +H +           +L   K  ++V       G  
Sbjct: 405 QADNDKRAKQMAQTMRDFDLDIPVVHED-----------ELSEKKAQIIV--GGFASGFT 451

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTI 675
           +P   LV + + +           I+T+
Sbjct: 452 LPSVNLVYLTERELFNKRPQHKRRIKTL 479



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 8/161 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          + D      Q+G 
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPIQTYVMEQTPSVIRDACLREMQRGG 824

Query: 584 RILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          ++    L + L    I     H  +   +  +I+      +FDVLV  
Sbjct: 825 QVFYLHNRIGDIDEVVARLEKLLPNARIASA--HGRMSQNQLEDILYRFLNREFDVLVTT 882

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            ++  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 883 TIIETGIDMPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 922


>gi|322388485|ref|ZP_08062088.1| transcription-repair coupling factor [Streptococcus infantis ATCC
           700779]
 gi|321140798|gb|EFX36300.1| transcription-repair coupling factor [Streptococcus infantis ATCC
           700779]
          Length = 1167

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/514 (15%), Positives = 184/514 (35%), Gaps = 67/514 (13%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           ++ +LLLG++GS K+  +A  ++   +  +VM      A +L ++  +    + V  F+ 
Sbjct: 27  KQRELLLGLSGSAKSLAIASSVKNQNK-ILVMTSTYGEADRLVNDLISILGTDMVYPFLV 85

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
                      P  +  +  +  I  +++ +R    +S   +   +V +  +    +   
Sbjct: 86  DDS--------PMVEFLVSSQEKIFSRVEALRFLRDKS---QKGILVCNMAASRLFLPDP 134

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           + +   +++L++G+  EQ+EL + L+   YK+      +G F + GD ++IF    +   
Sbjct: 135 QVFDNSVLKLEVGEECEQRELKNQLISLGYKKVTQVQSQGEFSLRGDILDIFE-TSQLSP 193

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
           +R+  FG++I+ I EF   T     +   + IY  S  +      N   ++++ E+   +
Sbjct: 194 YRIEFFGDEIDGIREFDADTQLSKDSQSQVLIYPASDILLTVEDYNRGQQFLEHEIDKTI 253

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP- 466
                      +  L+  +       +       I  +      +       TL +Y+  
Sbjct: 254 -----------SPTLKSYLEEVFSCAKEQVLHADIRKFLSVFYKKQ-----WTLIDYLNQ 297

Query: 467 -----EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
                +D    +++  +   + +G +  D      ++   +              ++   
Sbjct: 298 APIIFDDFQKIMNQYDIFDKETAGYFTEDLQNSKAVSSLQY--------FADVESQFKKY 349

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            P +   +   G   L+        Q             ++    Q   + +EI    + 
Sbjct: 350 LPASFFSNFQKGLGNLKFDHLYQFNQYP-----------MQEFFNQFSFLKEEIERYKKL 398

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
              I+L   ++   + L+  L E +I+V                 ++  G  +++     
Sbjct: 399 KYTIVLQSSSQTELKKLSTILDEYSIKVD-----------NSNQSEICKGTVNLV--EGN 445

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           LR G    +  LV I + +       +    Q I
Sbjct: 446 LRHGFHFVDENLVFITEYEIFKKKIKRKYRRQNI 479



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          + D +     +G 
Sbjct: 765 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEQNDRVIRDAVLREIDRGG 824

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E    +L E + E +I   ++H ++  +     + D   G++D+LV  
Sbjct: 825 QVYYLYNKVDTIEKKVSELQELIPEASI--GFVHGQMSEIRLENTLLDFIEGEYDILVTT 882

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I +AD  G L +   L   +GR+ R      I YA  + +  + 
Sbjct: 883 TIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKS 935

Query: 700 AIDETTRRRE 709
             + + +R E
Sbjct: 936 LTEVSEKRLE 945


>gi|24378538|ref|NP_720493.1| putative transcription-repair coupling factor [Streptococcus mutans
           UA159]
 gi|24376386|gb|AAN57799.1|AE014853_6 putative transcription-repair coupling factor [Streptococcus mutans
           UA159]
          Length = 1162

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 103/684 (15%), Positives = 230/684 (33%), Gaps = 126/684 (18%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I +  + + +  + QL++G + S K   +A   +  +   +++   +  A +L ++
Sbjct: 9   QNQKIKEWTEHLSAPTR-QLVMGFSSSSKALAIAAAYKQQKGKIVIVTSTQNEAEKLATD 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +      V  F +          V   +     +   N +++ +       L +    
Sbjct: 68  LISLIGEEEVYQFFADD--------VAAAEFIFASQDRTNSRVESLNFL----LDKEKSG 115

Query: 273 IVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           I+++S+  I   + S ++Y     +LK+G+      ++  L    Y++       G F  
Sbjct: 116 ILMTSIVGIRILLPSPQNYQAAQFKLKVGEEYNLDNIIKQLSNIGYQKVAQVYNPGEFSK 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++I+  + +   +R+  FG++I+ I  F P   + + N+++  +  +   +     
Sbjct: 176 RGDILDIYEIN-QPYPYRLEFFGDEIDGIRTFDPDDQRSLSNLDSFILIPSDDIILTDSD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
            + A   +++ L      L+                Y  E+L  T      ++  ++L+ 
Sbjct: 235 FDQACYNLEKALITANDSLQP---------------YLKEVLSVTKDHYRHQDVRKFLSF 279

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               E   TL  Y+PE + LF D+    I +       I+ +   D      ++      
Sbjct: 280 FYQKE--WTLLNYLPEQTPLFFDDFQRIIDRNSHFDLDIANLLTEDLQNSKAVSSL---- 333

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
            S   N    +++    +P T   +   G   L+        Q             ++  
Sbjct: 334 -SYFAN---NYKDLRHYQPATFFSNFHKGLGNLKFDYLYNFTQYP-----------MQEF 378

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + DEI    +  + +LL   +++    L + L   N  +    S+V  L + + 
Sbjct: 379 FNQFPLLIDEIRRYQKSEMTVLLQTDSQQSQGRLQKALQGYNFNLP--ISQVDNLLKKQA 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE----------GFLRSKTSL--- 671
                       + I  L  G    +  LV I + +             ++ +   L   
Sbjct: 437 Q-----------LTIGNLSTGFYFADEKLVLITEREIFHKKVKHKRRRSYISNAERLKDY 485

Query: 672 ------------IQTIGRAARNVNSKVI-LYADTITKSIQLA--IDETTRRREKQLEHNK 716
                       +  IGR       +V  ++ D +T   Q A  I     + E   ++  
Sbjct: 486 NELEKGDYVVHNVHGIGRFLGIETIEVSGVHRDYLTIQYQNADRISIPIEQIELLSKYVA 545

Query: 717 KHNINPQ--------------SVKEKIMEVIDPILLEDAATTNISI-------------D 749
                P+               V +++ ++ D +L   A  + +               D
Sbjct: 546 SDGKEPKINKLNDGRFQRIKQKVSKQVEDIADDLLKLYAERSQLKGFAFSPDDKNQEEFD 605

Query: 750 AQQLSLSKKKGKAHLKSLRKQMHL 773
                +  +     +K ++K M  
Sbjct: 606 NDFAYVETEDQLRSIKEVKKDMEK 629



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 10/175 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     T    + + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPSNRYPVQTYVMETNASVIREAIMREIDRGG 821

Query: 584 RIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +I      +  + K++AE L E + E NI   ++H ++  ++    + D   G++D+LV 
Sbjct: 822 QIFYIYNRVDTIDKKVAE-LRELIPEANI--GFVHGKMSEIQLENTLLDFISGEYDLLVT 878

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
             ++  G+DI     + I +AD  G L +   L   +GR+ R   + ++ + D I
Sbjct: 879 TTIIETGIDISNVNTLFIENADYMG-LSTLYQLRGRVGRSNRIAYAYLMYHPDKI 932


>gi|85858740|ref|YP_460942.1| transcription-repair coupling factor [Syntrophus aciditrophicus SB]
 gi|85721831|gb|ABC76774.1| transcription-repair coupling factor [Syntrophus aciditrophicus SB]
          Length = 1202

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 99/553 (17%), Positives = 193/553 (34%), Gaps = 59/553 (10%)

Query: 154 PAA--IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           PAA  +  L + I    +   +  + GS   F +A + E + RP +V++P +  A + + 
Sbjct: 11  PAAPVLRMLRERIEGGVERLSVNRLHGSANAFLIAALSEQLGRPLVVLSPTEKEARETFQ 70

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +   F     V  +  +         +  TD +     ++   ++ +R      LL    
Sbjct: 71  DLSLFLGSGKVLLYPPWD--------IQTTDMF-----ALQRDVELVRMEVLARLLTDEP 117

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQ-LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            ++V+S+  +       S     ++ L  G  V + EL++ LV   Y+R  +   +G F 
Sbjct: 118 AVIVASLKALMQKVVPRSILDAYLEILAPGSEVPRDELVAKLVAGGYQRMTLVEDKGEFS 177

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + G  ++IFP  LED   R+   G+D+E +  F P + +     E   +      +    
Sbjct: 178 LRGHVLDIFPP-LEDSPLRLEFDGDDLESLRAFDPASQRSTGRREAFVLSPAREVILSEE 236

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
               A++ I+     R   LE    +    RL + I      L T+ +   +  +   L 
Sbjct: 237 RRQRALQNIRY----RAAALELPRNV--RDRLSETID---AGLSTSFNPLFLPLFYESLA 287

Query: 451 GRNPGEPPP-----------TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +P  P             T F+Y+P +  + +D++ + I         +  R    AE
Sbjct: 288 PTSPDSPTENATATQAVRLGTFFDYLPGNCFVVLDDA-LAIENAGERIENEIDRCLLKAE 346

Query: 500 YG--FRLPSCMDNRPLRFEEWNCLRPTTIVVS-------ATPGSWELEQCQGIIVEQIIR 550
               F L              +  R   +++            S   E+ Q    E +  
Sbjct: 347 REGKFYLEREASYVTKDAFIKDLRRFQRMILEGLALGRLTEYASGNGEKTQASQYESLPL 406

Query: 551 PTGLVDPPVEIR----SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           P        ++        T +  + + I    Q+G+ +      K   + +   L    
Sbjct: 407 PLATDPELGDLHRGPGGEETLLAPLVEHIRRWLQEGMLVAFLCSGKEDLQRMRHLLGNYE 466

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           + VR   +   +L     +     G   + +    L      P+  L AI  +++E F +
Sbjct: 467 LPVR---TPEGSLISEAFLH---SGPGVLSLREGRLSRSFLFPDLKLAAI--SEEELFGK 518

Query: 667 SKTSLIQTIGRAA 679
             T       R  
Sbjct: 519 KITGRRIRSAREG 531



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 11/173 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    II         ++        E + + I     +  
Sbjct: 814 VLTLTATPIPRTLHLSLVGIRDLSIINTPPEDRQTIKTYVLEFNEETIREAIRRELARNG 873

Query: 584 RILLT---VLTKRMAEDLTEYLY-ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V +      L E L  E +I V  +H ++K  E  +++      + +VLV  
Sbjct: 874 QVFFLHDRVRSIYTMARLVEKLVPEADIGV--VHGQMKPREIEDVMGRFLRKECNVLVCT 931

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            ++  GLDIP    + +  AD+ G  +    L Q  GR  R+           
Sbjct: 932 TIIGSGLDIPTANTILVNRADRFGLAQ----LYQIRGRVGRSSEEAYAYLLVP 980


>gi|116074923|ref|ZP_01472184.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9916]
 gi|116068145|gb|EAU73898.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9916]
          Length = 1194

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 86/514 (16%), Positives = 174/514 (33%), Gaps = 67/514 (13%)

Query: 153 QPAAIA-QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           Q +A+  +LL+     E++ LL G   + +      +     +  +V+ P    A +  +
Sbjct: 26  QTSALTGELLERSQRSERL-LLRGANRAARALVTTALARRADQSLLVVVPTLEEAGRWTA 84

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
             +     +A  Y  S    Y+P  + P T+    +   ++E  D+              
Sbjct: 85  LLELMGWRSAQLYPTSEGSPYEP--FDPTTEITWGQLQVLSELQDK----------GSEG 132

Query: 272 CIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             +V++  C+   +   ++ +     L+ GDS++ +EL  +L +  Y+R       GT+ 
Sbjct: 133 LAIVATERCLQPHLPPPQALASRCRTLRKGDSLDLEELAINLSQLGYERVSTIDQEGTWS 192

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
             GD ++IFP   E +  R+  FG++++++ EF P + + +  VE +++           
Sbjct: 193 RRGDIVDIFPVSSE-LPVRLEFFGDELDKLREFDPASQRSLDPVEHLRLTPTGFSPLIAE 251

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                   +++ +   L +L  E                 E L      Q+ E   R + 
Sbjct: 252 -------QLRDSMPEGLDQLLSE-----------------EQLGALLDGQTPEGMRRLMG 287

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
                E P +L +Y+P    + +DE                   + L          +  
Sbjct: 288 L--AWEQPASLLDYLPNHCSVVIDERRHGQAHGQQWLDHAEEHHSEL---------ALKV 336

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            PL       +                +       +   RP         + +   Q   
Sbjct: 337 PPLHRSIAEAMEQAEAFSGFDLAELLEDDNHSNGFDLSSRP---------VAAYPNQFGK 387

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + + I    ++   + L       A  L   L E +   R++       +   I R +  
Sbjct: 388 LGELIKGYQRERQAVWLVSAQPSRAVAL---LEEHDCISRFV---PNAADHQAIDRLIEQ 441

Query: 631 GKFDVLVGINLLR-EGLDIPECGLVAILDADKEG 663
           G    L        EGL +P   +V + D +  G
Sbjct: 442 GTPVALKSKGTAELEGLQLPAWRVVLVTDREFFG 475



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 71/195 (36%), Gaps = 17/195 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E V   I    
Sbjct: 774 VLTLSATPIPRTLYMSLSGVREMSLITT----PPPLRRPIKTHLAALDEEAVRSAIRQEL 829

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V   +  E++   L E    +++   H ++   E    +     G+ DV++
Sbjct: 830 DRGGQVFYVVPRVQGIEEVAGKLREMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVML 889

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA + G  +    L   +GR+    ++ +    D      
Sbjct: 890 CTTIVESGLDIPRVNTILIEDAHRFGLAQ-LYQLRGRVGRSGIQAHAWLFYPGDASLSDA 948

Query: 698 QLAIDETTRRREKQL 712
                   R R  Q 
Sbjct: 949 AR-----QRLRAIQE 958


>gi|295692138|ref|YP_003600748.1| transcription-repair coupling factor [Lactobacillus crispatus ST1]
 gi|295030244|emb|CBL49723.1| Transcription-repair coupling factor [Lactobacillus crispatus ST1]
          Length = 1164

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 81/508 (15%), Positives = 187/508 (36%), Gaps = 53/508 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + ++   +  P I++  N+  A  LY E         V+ F   
Sbjct: 24  KNSLITGTNAGAFSLLLKQITTKLAAPLILIEENESKAQNLYGELSAIMADETVQIF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                     P   T   + +  +      R  A   LL     IVV++   + Y + + 
Sbjct: 81  ----------PVDATIATQTAVSSPDELSSRIQALNFLLSGKAGIVVTTPQGLQYKLTNP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             ++Q     + G   E KEL   L+   Y+R  +    G F + GD ++++P   E+  
Sbjct: 131 TDFAQAKRSFEPGQEYELKELNEWLLASGYQRDSLVARPGEFAIRGDILDVYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ I EF   + +  + ++ +++ A    V  +  +  A K I++++    
Sbjct: 190 VRIEFFGDEIDTIKEFDLASQRSQKELDKVEVAAAQDRVFTKDAIAAAAKKIEQDMA--- 246

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                      A+ ++      L+ L   G  ++      YL      E   +L EY+P+
Sbjct: 247 ------NAPAPAKAVKDHFAAVLDELNDGGLPKNYAFLIDYLL-----EISSSLLEYLPK 295

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           +  +  D+  +    +  + + +        + G  LP     R    +  +  +   I 
Sbjct: 296 NGQILFDDLPLINQAVETVDKQNAAFINDELKTGAMLPGQSL-RSDYTKILSKDKHHRIY 354

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
            S        ++  G +  ++ +         E   +  Q+  +  E+    + G  ++L
Sbjct: 355 FSL------FQRSMGRL--RLGQMLNWSTREPEQFFS--QMPLIKSELESYQKAGQTVIL 404

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
               ++ A+ + + + +  + +  + ++    +R +             + ++    G  
Sbjct: 405 QADNEKRAQQIDQTMVDFGLNLPIVGADEIVEQRTQ-------------IVVDGFVSGFS 451

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTI 675
           +P   LV + + +       +   I+T+
Sbjct: 452 LPTVKLVYLTERELFNKRPQRKKRIKTL 479



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      + +  +  T   +          Q+  V  D      Q+  
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPIQTYVMEQIPSVVRDACLREMQRDG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          ++  E L E   + R    H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFYLHNRISDIDETVEKLQELMPQARIAAAHGRMSQNQLEDILYRFLNREFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 885 IETGIDMPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 922


>gi|322392420|ref|ZP_08065880.1| transcription-repair coupling factor [Streptococcus peroris ATCC
           700780]
 gi|321144412|gb|EFX39813.1| transcription-repair coupling factor [Streptococcus peroris ATCC
           700780]
          Length = 1167

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 86/525 (16%), Positives = 184/525 (35%), Gaps = 68/525 (12%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I    + +  +++ QLLLG++GS K+  +A  +++  +  +VM      A +L ++  + 
Sbjct: 17  IQSWNEHLSLKQR-QLLLGLSGSAKSLAIASSVKSQNK-ILVMTSTYGEAERLVNDLISI 74

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + V  +    D      ++  +    EK  S  E +  +R  + R +L      V +
Sbjct: 75  LGSDMV--YPLLVDDSPMVEFLVSSQ---EKIFSRVEALRFLRDKSQRGIL------VCN 123

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
             +    +   + +   +++L+IG   EQ EL + L+   YK+      +  F + GD +
Sbjct: 124 VAASRLFLPDPQVFDNSMLKLEIGQECEQNELKNQLISLGYKKVTQVQSQSEFSLRGDIL 183

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IF    +   +R+  FG++I+ I EF   T     +   + IY  S  +      +   
Sbjct: 184 DIFE-TSQISPYRIEFFGDEIDGIREFDTETQLSKDSKTQVLIYPASDILLTNEDYHRGQ 242

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           K+++ E+   L           +  L+  +       +       I  +      +    
Sbjct: 243 KFLEHEIDKAL-----------SPTLKSYLEEVFSCTKEQVLHTDIRKFLSVFYKKQ--- 288

Query: 457 PPPTLFEYIP------EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
              TL +Y+       +D    +++      + +  +  D H    ++   +        
Sbjct: 289 --WTLIDYLNQVPVIFDDFQKIMNQYDAFDKETASYFTEDLHNSKAVSSLQY-------- 338

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
                 ++    P +   +   G   L+        Q             ++    Q   
Sbjct: 339 FADVESQFKKYLPVSFFSNFQKGLGNLKFEHLYQFNQYP-----------MQEFFNQFSF 387

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + +EI    +    I+L   +K   + L+  L E  I+V                 D+  
Sbjct: 388 LKEEIERYKKLKYTIVLQSSSKTELKKLSTILDEYGIKVD-----------SSNKSDICK 436

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           G  +++     LR G    +  LV I + +       +    Q I
Sbjct: 437 GTVNLV--EGNLRHGFHFVDENLVFITEYEIFKKKVKRKYRRQNI 479



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          + D +     +G 
Sbjct: 765 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEQNDHVIRDAVLREIDRGG 824

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E    +L E + E +I   ++H ++  +     + D   G++D+LV  
Sbjct: 825 QVYYLYNKVDTIEKKVSELQELIPEASI--GFVHGQMSEIRLENTLLDFIEGEYDILVTT 882

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I +AD  G L +   L   +GR+ R      I YA  + +  + 
Sbjct: 883 TIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKS 935

Query: 700 AIDETTRRRE 709
             + + +R E
Sbjct: 936 LTEVSEKRLE 945


>gi|51244134|ref|YP_064018.1| transcription-repair coupling factor [Desulfotalea psychrophila
           LSv54]
 gi|50875171|emb|CAG35011.1| related to transcription-repair coupling factor [Desulfotalea
           psychrophila LSv54]
          Length = 1184

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 89/522 (17%), Positives = 193/522 (36%), Gaps = 71/522 (13%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
            ++K   L G+ GS      A++ +        + P+  L   +    +  F    +  +
Sbjct: 11  DKKKAITLSGLRGSSTALLAAQLAKNSS--CCCIVPDDHLIPIVVQNLQ-LFSEKTILSY 67

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT--RSLLERNDCIVVSSVSCIYG 283
                        P  +       S ++++   R ++    +  E    IV S  + +  
Sbjct: 68  -------------PSHEIPPYTALSPDQKVTATRLASLYQAANSEHPTIIVTSIEALLRR 114

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS-- 341
           +   E  S  +  +  G+  ++  L++SL+   Y +  +    G F V G  I+I+P   
Sbjct: 115 VIPKELLSARVELIMAGEDCDRDGLITSLLLLGYDKVSLTKNVGDFAVRGGIIDIYPPAF 174

Query: 342 -----HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
                 L +   R+  FG+ +E +  F P++ +    +E   +     ++       + +
Sbjct: 175 ALENGQLHEGPLRLDFFGDTVESLRTFDPVSQRSTGKLEEAILLPTRDFIIDTSAKKS-L 233

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           + I   L+ R  +          + L Q       MLE   + Q I     +L    PG+
Sbjct: 234 QEIGTALQTRADKYS------WNEELTQT------MLEKINTGQGIAGIESFLPLFFPGK 281

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              +LF+++ ED+ + + +S      +   Y+        L   G   P+          
Sbjct: 282 NLSSLFDFLTEDTTMVLMDSFAIQQSMRMSYQRIEQNY--LEVQGAGTPA---------- 329

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQII-----------RPTGLVDPPVEIRSA- 564
               L P  I +S      +L   + + +  I+           +  GL+   +  R A 
Sbjct: 330 ----LPPKEIFLSPEEIKEKLSSFRQVRLSDIVSEQDNATSYNTQSHGLLKQEIARRRAK 385

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
              +  + + I    ++G RI++   +++  ++L E L   +  +  + S +   +  + 
Sbjct: 386 EGILVPLIERIRQWQEEGHRIVICCRSEKHTKNLAEMLERHHFNISVVPSPLSLPDLQK- 444

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
               R  + ++L+  + L EG  +PE G   I +++  G +R
Sbjct: 445 ----RAEQREILLCDHPLSEGFSLPEQGWDIISESELFGQMR 482



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 71/200 (35%), Gaps = 20/200 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV---EDVY--DEINLA 578
            + ++ATP    L+          IR   ++  P E R   +T V   +D+   + I+  
Sbjct: 776 ILTLTATPIPRTLQMSLLS-----IRDLSVISSPPEQRRPVKTFVAEDDDLVIKEAISRE 830

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVL 636
            ++  +        +    +   + +     R    H ++ T E   I+      + DVL
Sbjct: 831 LRRKGQTFFVHNRVKSIYQIANKIEKLVPDARIAVAHGQMDTKELENIMVSFVNKEVDVL 890

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  GLDIP    + I  AD  G       + Q  GR  R+              S
Sbjct: 891 VATTIIESGLDIPSANTMIINRADNLGLAE----MYQLRGRVGRSSTQSFAYLLVPSLDS 946

Query: 697 IQLAIDETTRRREKQLEHNK 716
           I     ++  R    +E N+
Sbjct: 947 ISK---DSRERLRALMECNE 963


>gi|262047218|ref|ZP_06020176.1| transcription-repair coupling factor [Lactobacillus crispatus
           MV-3A-US]
 gi|312978409|ref|ZP_07790151.1| transcription-repair coupling factor [Lactobacillus crispatus
           CTV-05]
 gi|260572463|gb|EEX29025.1| transcription-repair coupling factor [Lactobacillus crispatus
           MV-3A-US]
 gi|310894752|gb|EFQ43824.1| transcription-repair coupling factor [Lactobacillus crispatus
           CTV-05]
          Length = 1164

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 81/508 (15%), Positives = 186/508 (36%), Gaps = 53/508 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + ++   +  P I++  N+  A  LY E         V+ F   
Sbjct: 24  KNSLITGANAGAFSLLLKQITTKLAAPLILIEENESKAQNLYGELSAIMADETVQIF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                     P   T   + +  +      R  A   LL     IVV++   + Y + + 
Sbjct: 81  ----------PVDATIATQTAVSSPDELSSRIQALNFLLSGKAGIVVTTPQGLQYKLTNP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             ++Q     + G   E KEL   L+   Y+R  +    G F + GD ++++P   E+  
Sbjct: 131 TDFAQAKRSFEPGQEYELKELNEWLLASGYQRDSLVARPGEFAIRGDILDVYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ I EF   + +  + ++ +++ A    V  +  +  A K I++++    
Sbjct: 190 VRIEFFGDEIDTIKEFDLASQRSQKELDKVEVAAAQDRVFTKDAIAAAAKKIEQDMAS-- 247

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                      A+ ++      L+ L   G  ++      YL      E   +L EY+P+
Sbjct: 248 -------APAPAKAVKDHFAAVLDELNDGGLPKNYAFLIDYLL-----EISSSLLEYLPK 295

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           +  +  D+  +    +  + + +        + G  LP     R    +  +  +   I 
Sbjct: 296 NGQILFDDLPLINQAVETVDKQNAAFINDELKTGAMLPGQSL-RSDYTKILSKDKHHRIY 354

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
            S        ++  G +    +      +P        +Q+  +  E+    + G  ++L
Sbjct: 355 FSL------FQRSMGRLRLGQMLNWSTREPEQ----FFSQMPLIKSELESYQKAGQTVIL 404

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
               ++ A+ + + + +  + +  + ++    +R +             + ++    G  
Sbjct: 405 QADNEKRAQQIDQTMVDFGLNLPIVGADEIVEQRTQ-------------IVVDGFVSGFS 451

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTI 675
           +P   LV + + +       +   I+T+
Sbjct: 452 LPTVKLVYLTERELFNKRPQRKKRIKTL 479



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      + +  +  T   +          Q+  V  D      Q+  
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPIQTYVMEQIPSVVRDACLREMQRDG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          ++  E L E   + R    H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFYLHNRISDIDETVEKLQELMPQARIAAAHGRMSQNQLEDILYRFLNREFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 885 IETGIDMPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 922


>gi|256844410|ref|ZP_05549896.1| transcription-repair coupling factor [Lactobacillus crispatus
           125-2-CHN]
 gi|256613488|gb|EEU18691.1| transcription-repair coupling factor [Lactobacillus crispatus
           125-2-CHN]
          Length = 1164

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 81/508 (15%), Positives = 187/508 (36%), Gaps = 53/508 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + ++   +  P I++  N+  A  LY E         V+ F   
Sbjct: 24  KNSLITGANAGAFSLLLKQITTKLAAPLILIEENESKAQNLYGELSAIMADETVQIF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                     P   T   + +  +      R  A   LL     IVV++   + Y + + 
Sbjct: 81  ----------PVDATIATQTAVSSPDELSSRIQALNFLLSGKAGIVVTTPQGLQYKLTNP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             ++Q     + G   E KEL   L+   Y+R  +    G F + GD ++++P   E+  
Sbjct: 131 TDFAQAKRSFEPGQEYELKELNEWLLASGYQRDSLVARPGEFAIRGDILDVYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ I EF   + +  + ++ +++ A    V  +  +  A K I++++    
Sbjct: 190 VRIEFFGDEIDTIKEFDLASQRSQKELDKVEVAAAQDRVFTKAAIAAAAKKIEQDMA--- 246

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                      A+ ++      L+ L   G  ++      YL      E   +L EY+P+
Sbjct: 247 ------NAPAPAKAVKDHFAAFLDELNDGGLPKNYAFLIDYLL-----EISSSLLEYLPK 295

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           +  +  D+  +    +  + + +        + G  LP     R    +  +  +   I 
Sbjct: 296 NGQILFDDLPLINQAVETVDKQNAAFINDELKTGAMLPGQSL-RSDYTKILSKDKHHRIY 354

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
            S        ++  G +  ++ +         E   +  Q+  +  E+    + G  ++L
Sbjct: 355 FSL------FQRSMGRL--RLGQMLNWSTREPEQFFS--QMPLIKSELESYQKAGQTVIL 404

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
               ++ A+ + + + +  + +  + ++    +R +             + ++    G  
Sbjct: 405 QADNEKRAQQIDQTMVDFGLNLPIVGADEIVEQRTQ-------------IVVDGFVSGFS 451

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTI 675
           +P   LV + + +       +   I+T+
Sbjct: 452 LPTVKLVYLTERELFNKRPQRKKRIKTL 479



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      + +  +  T   +          Q+  V  D      Q+  
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPIQTYVMEQIPSVVRDACLREMQRDG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          ++  E L E   + R    H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFYLHNRISDIDETVEKLQELMPQARIAAAHGRMSQNQLEDILYRFLNREFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 885 IETGIDMPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 922


>gi|227878367|ref|ZP_03996322.1| transcriptional repair coupling factor [Lactobacillus crispatus
           JV-V01]
 gi|256849202|ref|ZP_05554635.1| transcriptional repair coupling factor [Lactobacillus crispatus
           MV-1A-US]
 gi|227862046|gb|EEJ69610.1| transcriptional repair coupling factor [Lactobacillus crispatus
           JV-V01]
 gi|256713978|gb|EEU28966.1| transcriptional repair coupling factor [Lactobacillus crispatus
           MV-1A-US]
          Length = 1164

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 81/508 (15%), Positives = 186/508 (36%), Gaps = 53/508 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  L+ G      +  + ++   +  P I++  N+  A  LY E         V+ F   
Sbjct: 24  KNSLITGANAGAFSLLLKQITTKLAAPLILIEENESKAQNLYGELSAIMADETVQIF--- 80

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
                     P   T   + +  +      R  A   LL     IVV++   + Y + + 
Sbjct: 81  ----------PVDATIATQTAVSSPDELSSRIQALNFLLSGKAGIVVTTPQGLQYKLTNP 130

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             ++Q     + G   E KEL   L+   Y+R  +    G F + GD ++++P   E+  
Sbjct: 131 TDFAQAKRSFEPGQEYELKELNEWLLASGYQRDSLVARPGEFAIRGDILDVYPLDREN-P 189

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG++I+ I EF   + +  + ++ +++ A    V  +  +  A K I++++    
Sbjct: 190 VRIEFFGDEIDTIKEFDLASQRSQKELDKVEVAAAQDRVFTKDAIAAAAKKIEQDMAS-- 247

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                      A+ ++      L+ L   G  ++      YL      E   +L EY+P+
Sbjct: 248 -------APAPAKAVKDHFAAVLDELNDGGLPKNYAFLIDYLL-----EISSSLLEYLPK 295

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           +  +  D+  +    +  + + +        + G  LP     R    +  +  +   I 
Sbjct: 296 NGQILFDDLPLINQAVETVDKQNAAFINDELKTGAMLPGQSL-RSDYTKILSKDKHHRIY 354

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
            S        ++  G +    +      +P        +Q+  +  E+    + G  ++L
Sbjct: 355 FSL------FQRSMGRLRLGQMLNWSTREPEQ----FFSQMPLIKSELESYQKAGQTVIL 404

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
               ++ A+ + + + +  + +  + ++    +R +             + ++    G  
Sbjct: 405 QADNEKRAQQIDQTMVDFGLNLPIVGADEIVEQRTQ-------------IVVDGFVSGFS 451

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTI 675
           +P   LV + + +       +   I+T+
Sbjct: 452 LPTVKLVYLTERELFNKRPQRKKRIKTL 479



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      + +  +  T   +          Q+  V  D      Q+  
Sbjct: 765 VLTLTATPIPRTLHMSMVGVRDLSVMETPPQNRYPIQTYVMEQIPSVVRDACLREMQRDG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          ++  E L E   + R    H  +   +  +I+      +FD+LV   +
Sbjct: 825 QVFYLHNRISDIDETVEKLQELMPQARIAAAHGRMSQNQLEDILYRFLNREFDILVTTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 885 IETGIDMPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 922


>gi|322417709|ref|YP_004196932.1| transcription-repair coupling factor [Geobacter sp. M18]
 gi|320124096|gb|ADW11656.1| transcription-repair coupling factor [Geobacter sp. M18]
          Length = 1157

 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 95/516 (18%), Positives = 185/516 (35%), Gaps = 54/516 (10%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
           P  + QL + +        + G+ GS   + ++++ E    P +V+  ++  A +L  E 
Sbjct: 6   PQYLKQLSEKLTPATCRVSVAGLEGSAPAYLLSRLSENGAPPLVVLTADQESADELAREL 65

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           + F            +D    EA  P  D   E            R +A   LL+     
Sbjct: 66  QFFASRPESVLPFPAWDVTPFEAASPHPDIVGE------------RLNALVRLLDGGARA 113

Query: 274 VVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V  V S +  +   E+   +   L  G+ +E++ L+  LVK  Y    +   RGTF V 
Sbjct: 114 IVLPVASALQRVIPRETLGGVCQYLVAGEELERENLVEKLVKLGYSHVPLVEDRGTFSVR 173

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++IFP   E    R+  FG+ +E +  F P++ + +  +  + +  +   +      
Sbjct: 174 GGILDIFPPDQE-KPVRIEFFGDLVETMRLFDPVSQRSLEPLPELVLLPSREVILS---- 228

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
               + + +EL  RL        +   +R        LE L+       ++         
Sbjct: 229 ----EQVVKELTPRLKRRCDHLGIGADRR-----RELLEQLQHAIYPPGVDFLQPLFH-- 277

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
            PG    T+ +Y  E ++  + +       +   +  +       AE    +        
Sbjct: 278 -PGLE--TVLDYAGEGAVRVLVDPDAITEALQ-CFHEELESAVKRAELRDAIICDPAELY 333

Query: 513 LRFEEWNCLRPTTIVVSATPGSW----ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           L  EE   L      +SA         E+E   G  +   +   G  D  ++      +V
Sbjct: 334 LCQEEMERL------LSAGRRLEFPRLEIEGEGGDKLR--VNCAGNRDLRLDANPEGERV 385

Query: 569 -EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
              + +++      G R+L+       A  L E L    + +   HS+     R+  +R 
Sbjct: 386 LAPLTEKMVTWIAAGNRVLVPCHQAGQARRLYELLSHYRLPLE--HSQ--DPFRVAALRP 441

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
              G+ ++L+    +  G  +    LV + + +  G
Sbjct: 442 --PGRVEILI--GEISRGFRLEGERLVVVAEEEIFG 473



 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 69/194 (35%), Gaps = 14/194 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + ++ATP    L      I +  I  T  VD            +++  E  L   +   
Sbjct: 770 ILTLTATPIPRTLYMSLMGIRDLSIIDTPPVDRLAIKTFVSRSSDELIREAVLRELRRGG 829

Query: 585 ILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +  V  +      MA++L   + E  I V   H ++   E  +++     G+ ++L+  
Sbjct: 830 QIFFVHNRVQTIGAMADELRRIVPEAKIAVG--HGQMPEKELEQVMLSFMHGETNLLLCT 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+              SI  
Sbjct: 888 TIIESGLDIPTANTLIVNRADTFGLSQ----LYQLRGRVGRSKTRAYAYLLIPGEGSISP 943

Query: 700 AIDETTRRREKQLE 713
              E   R +   E
Sbjct: 944 ---EARERLKILQE 954



 Score = 41.6 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 4/146 (2%)

Query: 81  QSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITF 140
             +  +  K  R           +A A + +    LLK          +  +        
Sbjct: 552 VGAEGIEPKLDRLGGAGWEKAKAKARAEIQEMAAELLKIHAAREVQEGYRFSPADDMYRA 611

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    +  + DQ  AI Q++  + S R   +L+ G  G GKT   M    ++    +  
Sbjct: 612 FEASFAFEETPDQATAIDQVISDMESQRPMDRLVCGDVGYGKTEVAMRAAFKSTLDGKQV 671

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAV 222
            ++ P  +LA Q    F        V
Sbjct: 672 AILVPTTVLAQQHAESFAARLKDYPV 697


>gi|325125148|gb|ADY84478.1| Transcriptional repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 1163

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/523 (15%), Positives = 185/523 (35%), Gaps = 83/523 (15%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           SR K  LL GV        +   +  + +P +++  N+  A + Y++       + +E F
Sbjct: 21  SRIKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERYNDLSRLLADDDLELF 80

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
               +          T T +     ++ +I  +       L  R   ++ +     Y + 
Sbjct: 81  ALDGNL--------ATQTAVSSPDELSSRIQCLNLL----LSGRPGVVIATPQGLQYPLS 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +   + +      +GD +   +L   L +  Y R+++ +  G F + GD ++++P   E 
Sbjct: 129 APALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRES 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+  FG++I+ I  F   + + +  +    + A S +V     L+ A + +  +L  
Sbjct: 189 -PLRLEFFGDEIDTIKTFDLTSQRSLEELPEATVPAASDHVFTAEDLDRAGRELAGDLPK 247

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                 +  +               E L           Y  YL  ++      +L +Y+
Sbjct: 248 EAAASLEIAQ---------------EALANGQLPDDCNRYLDYLLPKS-----FSLLDYL 287

Query: 466 PEDSLLFVDESHVTIPQIS--GMYRGDF-----------HRKATLAEYGFRLPSCMDNRP 512
           P   L+  ++  +    +   G    D+            R+    ++   L +   +R 
Sbjct: 288 PAKGLILFNDWQLIAESVKNVGAINDDYLASQIASKMMTSRQKLRLDFDAVLKADCHHR- 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
                        + VS             +   +  +         +   +  Q+E + 
Sbjct: 347 -------------LYVSLM--------AHSMGRLRFGQHLAWDSREPQQFFS--QMELLK 383

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            E++  A++G  ++L V ++R AE+     ++ +I   Y+         +     L+ G+
Sbjct: 384 TELDSYAKKGQTVVLQVSSRRQAEEFNRSCHDYDI---YLP--------LAEADGLKEGR 432

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             +++       G  +P+  LV + + +     +     I+T+
Sbjct: 433 AQLVI--GGYASGFVLPDSDLVYLTEKELFNQNKRSKKRIKTL 473



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    ++        P++          V +      Q+G 
Sbjct: 764 VLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPIQTYVLEQLPGTVKEACQREMQRGG 823

Query: 584 RILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E+    L + L E  I   Y H ++   +  +I+      +FD+LV  
Sbjct: 824 QVFYLHNRVGDIEETVARLEQLLPEARI--AYAHGQMSENQLEDILSRFLDREFDILVTT 881

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            ++  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 882 TIIETGIDMPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 921



 Score = 46.2 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS-RE 168
           I  D   L   +      ++S +    D   F+    Y P+ DQ  A A++   +   + 
Sbjct: 572 IADDLIELYAKREAEKGFAFSPDGS--DQAAFEAAFPYEPTPDQLRATAEIKADMEKAKP 629

Query: 169 KVQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
             +LL+G  G GKT   M    +A+   +    + P  ILA Q Y   K+ F    V+ F
Sbjct: 630 MDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHYQTIKDRFKGFPVKGF 689

Query: 226 VSYYDYYQ 233
                 + 
Sbjct: 690 PVEIASFS 697


>gi|312128223|ref|YP_003993097.1| transcription-repair coupling factor [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778242|gb|ADQ07728.1| transcription-repair coupling factor [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 1141

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/454 (18%), Positives = 175/454 (38%), Gaps = 45/454 (9%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            +  +L + +  +    ++ G+   GK   +  + E   + A+ +       A+L  E +
Sbjct: 9   ESFKRLEEDVIKKSLPLVVTGLGEMGKALVVKSLCEKFNKKALFIT---TQRAKLEWERR 65

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
                N+V       + +            +    S + +I+RM     +   +  D ++
Sbjct: 66  FMSLFNSVVSLQERENPF-----------VVSFAKSRDSEINRME-QFVKIFEDGFDVLI 113

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +SS +      +++      + L  G  ++ + L+  L+K  Y+R      +G F   G 
Sbjct: 114 LSSQNLFEKYTNLKFDY---IHLTEGLDIQLEILIEKLLKFGYERVKTVEKKGQFSQKGG 170

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++I+P        R+  FG+ I+ I  F   T +    ++++KIY    +       + 
Sbjct: 171 IVDIYPV-ASRYPVRIEFFGDTIDTIRLFDVETQKSFERIDSVKIYKAIEWDL-EEDFSE 228

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
            +K +KE+ K   ++L+++GR    + LE+     +E L+      ++E    Y      
Sbjct: 229 GLKRVKEDYKKMKLKLKEDGR----KNLEESFREVVEELQL-----NVERLYPYYY---- 275

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
            +   ++ +   E  L+FVDE +     +    +      + L E GF LP   D     
Sbjct: 276 -QQFFSVIDIFGE-CLIFVDEYNQVYSSLKAFEQEMQEMFSDLLEKGFVLPKMADCYFTV 333

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            E       T I+ +      ELE          +R     +   E+ +   Q E + D+
Sbjct: 334 NEILQKFSSTIILQTFASSIKELE----------LREIISFNFFRELPTYNAQKEVLIDD 383

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +     +   I +   ++   EDL E L + NI+
Sbjct: 384 LKYYMSKNYTINIFTGSRTSLEDLEEALLKENIQ 417



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 69/175 (39%), Gaps = 8/175 (4%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          + + I     +G 
Sbjct: 756 VLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRYPVQTFVLEYNERIIKEAILKEISRGG 815

Query: 584 RILLTVLTKRMAEDLTEYLYER---NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           ++       +  +++   L      ++++   H +++  E  E++ D   G++DVLV   
Sbjct: 816 QVFYLYNRVKDIQEVAAKLQNLVGDSVKIACAHGQMEEEELEEVLIDFIEGRYDVLVCTT 875

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           ++  G+D+P    + + D+D+ G  +    L Q  GR  R+       +     K
Sbjct: 876 IIESGVDMPNVNTLIVEDSDRLGLAQ----LYQLRGRVGRSSRLAYAYFTFRKDK 926


>gi|297587541|ref|ZP_06946185.1| transcription-repair coupling factor [Finegoldia magna ATCC 53516]
 gi|297574230|gb|EFH92950.1| transcription-repair coupling factor [Finegoldia magna ATCC 53516]
          Length = 1168

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 83/496 (16%), Positives = 177/496 (35%), Gaps = 52/496 (10%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           + GV        +    + + +P +V+  + + A  L +E+ N    N  E+F       
Sbjct: 30  IHGVIKEAFASFVYATSKNIDKPLVVIVEDNMRARNL-TEYLNDIEDNICEFF------- 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYS 291
                 P  +  +    S+++  +  R +    LL     I+V++   +   I       
Sbjct: 82  ------PSRELNLYNAKSLDDNAENQRVNVLFKLLNNEQPIIVTTFDALTKKITKKSVAK 135

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           +    +K  D +  +EL   L   +Y+R D    +G F + G  ++IFP H      R+ 
Sbjct: 136 KYTFTIKDTDLINLEELQEKLKVLKYERVDTIESKGQFAIRGGIVDIFPVHS-RFPVRIE 194

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL- 410
           +F ++I+ +  F   T + I + + I I + S  +       + +  I++ L  R+    
Sbjct: 195 LFDDEIDSMRFFEVSTQRSIEDCKFIDIISCSELIIEESKKESIINSIQKNLDKRVNHPI 254

Query: 411 ---EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                +    + ++L + I  DLE      SC        +LT ++      T+F+Y  +
Sbjct: 255 FGENIDNVKDKFEKLMEYIRNDLEYEIDLVSC--------FLTKKDYD----TIFDYFLD 302

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           +S++ +++            +        L E G  L S  +   +   +   L      
Sbjct: 303 ESIMMIEDLSRCYDIYKEKEKRFLEDFVYLVEKGEVL-SKHEQSLIPISDILKLIKEKTC 361

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
           V+ T                I   +      +E  +    ++ + + I   + +G + ++
Sbjct: 362 VNIT--------SLVKRTRLIESNSMYQLKTLEAPNFNKNIDSLVENIKSNSLRGFKQIV 413

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
                     L +      I          TLE  +   +++  +  VL+    L  G +
Sbjct: 414 FAANVERKNMLKDLFLTNGIP---------TLEAEDYNANIKSSQ--VLITQKNLPNGFE 462

Query: 648 IPECGLVAILDADKEG 663
           I +   + I   +  G
Sbjct: 463 IKDPKYLIITYKEIFG 478



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 25/199 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVED-----VYDEINLA 578
            + +SATP    L+     +    IR   L++ P E R    T V +     + D I   
Sbjct: 777 VLTLSATPIPRTLQ-----MGLTGIRDMSLLEEPPEDRTPISTYVTEYNPSLIRDAIIRE 831

Query: 579 AQQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             +G +I          +     L E + E NI +   H  +   E   ++ D + G +D
Sbjct: 832 LDRGGQIYFVYNRIEDIDQMEFKLKELVPELNIAIA--HGRMNEKELENVMLDFQDGIYD 889

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  GLDI     + I +ADK G  +    L Q  GR  R+  +    +     
Sbjct: 890 LLLCTTIIETGLDIQNVNTMIIYNADKMGLSQ----LYQLKGRIGRSDRTSFAYFTY--- 942

Query: 695 KSIQLAIDETTRRREKQLE 713
              Q ++ E + +R   ++
Sbjct: 943 -EGQKSLTEISEKRLMAIK 960


>gi|313123080|ref|YP_004033339.1| transcription-repair coupling factor (superfamily ii helicase)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279643|gb|ADQ60362.1| Transcription-repair coupling factor (Superfamily II helicase)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 1158

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 80/523 (15%), Positives = 184/523 (35%), Gaps = 83/523 (15%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           SR K  LL GV        +   +  + +P +++  N+  A + Y++       + +E F
Sbjct: 21  SRIKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERYNDLSRLLADDELELF 80

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
               +          T T +     ++ +I  +       L  R   ++ +     Y + 
Sbjct: 81  ALDGNL--------ATQTAVSSPDELSSRIQCLNLL----LSGRPGVVIATPQGLQYPLS 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +   + +      +GD +   +L   L +  Y R+++ +  G F + GD ++++P   E 
Sbjct: 129 APALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRES 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+  FG++I+ I  F   + + +  +    + A S +V     L+ A + +  +L  
Sbjct: 189 -PLRLEFFGDEIDTIKTFDLTSQRSLEELPEATVPAASDHVFTAEDLDRAGRELDGDLPK 247

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                    +               E L         + Y  YL   +      +L +Y+
Sbjct: 248 EAAASLAIAQ---------------EALANGQLPDDCDRYLDYLLPES-----FSLLDYL 287

Query: 466 PEDSLLFVDESHVTIPQI--SGMYRGDF-----------HRKATLAEYGFRLPSCMDNRP 512
           P   LL  ++  +    +   G    D+            R+    ++   L +   +R 
Sbjct: 288 PAKGLLLFNDWQLIAESVKNMGAINDDYLASQIASKMMTSRQKLRLDFDAVLKADCHHR- 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
                        + VS             +   +  +         +   +  Q+E + 
Sbjct: 347 -------------LYVSMM--------AHSMGRLRFGQHLAWDSREPQQFFS--QMELLK 383

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            E++  A++G  ++L V ++R AE+     ++ +I   Y+         +     L+ G+
Sbjct: 384 TELDSYAKKGQTVVLQVSSRRQAEEFNRSCHDYDI---YLP--------LAEADGLKEGR 432

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             +++       G  +P+  LV + + +     +     I+T+
Sbjct: 433 AQLVI--GGYASGFVLPDSDLVYLTEKELFNQNKRSKKRIKTL 473



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    ++        P++          V +      Q+G 
Sbjct: 759 VLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPIQTYVLEQLPGTVKEACQREMQRGG 818

Query: 584 RILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E+    L + L E  I   Y H ++   +  +I+      +FD+LV  
Sbjct: 819 QVFYLHNRVGDIEETVARLEQLLPEARI--AYAHGQMSENQLEDILSRFLDREFDILVTT 876

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            ++  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 877 TIIETGIDMPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 916



 Score = 45.1 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 4/117 (3%)

Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT 182
              + ++ +    D   F+    Y P+ DQ  A A++   +   +   +LL+G  G GKT
Sbjct: 584 EAEKGFAFSPDGSDQAAFEAAFPYEPTPDQLRATAEIKADMEKAKPMDRLLVGDVGFGKT 643

Query: 183 -FTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
              M    +A+   +    + P  ILA Q Y   K+ F    VE         Q E+
Sbjct: 644 EVAMRAAFKAICDGKQVAFLVPTTILAQQHYQTIKDRFKGFPVEIASFSRFQGQAES 700


>gi|116513512|ref|YP_812418.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116092827|gb|ABJ57980.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 1158

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/523 (15%), Positives = 185/523 (35%), Gaps = 83/523 (15%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           SR K  LL GV        +   +  + +P +++  N+  A + Y++       + +E F
Sbjct: 21  SRIKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERYNDLSRLLADDDLELF 80

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
               +          T T +     ++ +I  +       L  R   ++ +     Y + 
Sbjct: 81  ALDGNL--------ATQTAVSSPDELSSRIQCLNLL----LSGRPGVVIATPQGLQYPLS 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +   + +      +GD +   +L   L +  Y R+++ +  G F + GD ++++P   E 
Sbjct: 129 APALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRES 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+  FG++I+ I  F   + + +  +    + A S +V     L+ A + +  +L  
Sbjct: 189 -PLRLEFFGDEIDTIKTFDLTSQRSLEELPEATVPAASDHVFTAEDLDRAGRELAGDLPK 247

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                 +  +               E L           Y  YL  ++      +L +Y+
Sbjct: 248 EAAASLEIAQ---------------EALANGQLPDDCNRYLDYLLPKS-----FSLLDYL 287

Query: 466 PEDSLLFVDESHVTIPQI--SGMYRGDF-----------HRKATLAEYGFRLPSCMDNRP 512
           P   LL  ++  +    +   G    D+            R+    ++   L +   +R 
Sbjct: 288 PAKGLLLFNDWQLIAESVKNMGAINDDYLASQIASKMMTSRQKLRLDFDAVLKADCHHR- 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
                        + VS             +   +  +         E +   +Q+E + 
Sbjct: 347 -------------LYVSLM--------AHSMGRLRFGQHLAWDSR--EPQHFFSQMELLK 383

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            E++  A++G  ++L V ++R AE+     ++ +I   Y+         +     L+ G+
Sbjct: 384 TELDSYAKKGQTVVLQVSSRRQAEEFNRSCHDYDI---YLP--------LAEADGLKEGR 432

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             +++       G  +P+  LV + +       +     I+T+
Sbjct: 433 AQLVI--GGYASGFVLPDSDLVYLTEKGLFNQNKRSKKRIKTL 473



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    ++        P++          V +      Q+G 
Sbjct: 759 VLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPIQTYVLEQLPGTVKEACQREMQRGG 818

Query: 584 RILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E+    L + L E  I   Y H ++   +  +I+      +FD+LV  
Sbjct: 819 QVFYLHNRVGDIEETVARLEQLLPEARI--AYAHGQMSENQLEDILSRFLDREFDILVTT 876

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            ++  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 877 TIIETGIDMPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 916



 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 51/131 (38%), Gaps = 6/131 (4%)

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS-RE 168
           I  D   L   +      ++S +    D   F+    Y P+ DQ  A A++   +   + 
Sbjct: 572 IADDLIELYAKREAEKGFAFSPDGS--DQAAFEAAFPYEPTPDQLRATAEIKADMEKAKP 629

Query: 169 KVQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
             +LL+G  G GKT   M    +A+   +    + P  ILA Q Y   K+ F    VE  
Sbjct: 630 MDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHYQTIKDRFKGFPVEIA 689

Query: 226 VSYYDYYQPEA 236
                  Q E+
Sbjct: 690 SFSRFQGQAES 700


>gi|222111676|ref|YP_002553940.1| transcription-repair coupling factor [Acidovorax ebreus TPSY]
 gi|221731120|gb|ACM33940.1| transcription-repair coupling factor [Acidovorax ebreus TPSY]
          Length = 1167

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 101/552 (18%), Positives = 189/552 (34%), Gaps = 93/552 (16%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           S EK   L    GS     +A++ E      R   ++  +   A +L  E   F P    
Sbjct: 7   SPEKRFTLPRPVGSADALLLARLGEREKAAGRTTAIVTADATDAQRLIDEMAFFAPELRC 66

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
             F  + +    +++ P  D   E+ +++  +I + R   T +     D ++V + + +Y
Sbjct: 67  ALFPDW-ETLPYDSFSPHQDLISERLATL-WRI-QQRDRDTGA-----DVVLVPATTALY 118

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +      +      K+   +++ +L + L    Y+     +  G + V G  I++FP  
Sbjct: 119 RLAPPSFLAGYTFHFKVKQKLDEAKLRAQLTLAGYQHVSQVVGHGEYAVRGGLIDLFPMG 178

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
              V +RV +F ++I+ I  F P + + +  V  +++     +              + +
Sbjct: 179 SA-VPYRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDAA--------RAK 229

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            + R  EL      LE      RI  D   +    +   IE Y          +   T+F
Sbjct: 230 FRQRWREL------LEGDPTRSRIYKD---MGNGVATAGIEYYLPLFF-----DETATVF 275

Query: 463 EYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC-MDNRPLRFEEWNCL 521
           +Y+  ++ + +     T  Q       D +R   L +     P+   +   L  E++   
Sbjct: 276 DYLGNEATVVLHGDLETAFQRFWQDTRDRYR---LIQGDPDHPTLPPEALFLGAEQFYAQ 332

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
                 +S  PG  ++                L D  V +R A   +  +   I    Q 
Sbjct: 333 ANQHAQLSLRPGVEDVADNAQF--------QKLPDLSV-VRGAEDPLARLQAHIRATGQT 383

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G R+LL   +    E L ++L    +      S    L   +   + R+G     +    
Sbjct: 384 GQRVLLLAESDGRRESLLDFLRASGLNPPAFDS----LAEFQGTPEERVG-----IATAA 434

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           L  G    E GL                                     D +T++   A 
Sbjct: 435 LASGFAWMEEGL-------------------------------------DLVTETELFAA 457

Query: 702 DETTRRREKQLE 713
             TTRRR+KQ +
Sbjct: 458 GSTTRRRKKQEQ 469



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 10/109 (9%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L E L E  I V   H ++   E   ++RD    ++++L+   ++  G+D+P    + I 
Sbjct: 842 LEEILPEARIAVA--HGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPTANTIIIS 899

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILY----ADTITKSIQLAID 702
            ADK G  +    L Q  GR  R+ +           D +TK  Q  +D
Sbjct: 900 RADKFGLAQ----LHQLRGRVGRSHHQAYAYLMVPDIDGLTKQAQQRLD 944


>gi|227499516|ref|ZP_03929623.1| transcription-repair coupling factor [Anaerococcus tetradius ATCC
           35098]
 gi|227218395|gb|EEI83646.1| transcription-repair coupling factor [Anaerococcus tetradius ATCC
           35098]
          Length = 1170

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/463 (15%), Positives = 169/463 (36%), Gaps = 57/463 (12%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I ++   I        L G+T   K   +  + +      +++A N+  A   Y +  N 
Sbjct: 17  IQEIENSIKY-YSPIYLSGLTDGFKPHLVLALFKKFDESIVLIAENEKRAVN-YLDSING 74

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              N   ++             P  D       SI+ +    R      L ++   I+V+
Sbjct: 75  ISDNVALFY-------------PSLDINFYNIKSIDNKKLSQRMDVLTKLAKKEKFIIVT 121

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           S+  +   +  ++ +++  V++   D ++  + +  L++  Y    +   +G F      
Sbjct: 122 SLEAMTNKLTPLDKFNKSFVKIGDEDVIDIDKFVKKLLELNYNPTSLVENKGDFAKRASI 181

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+ +P   ++   R+ +F ++++ I  F   + + +  +++ +I   S  +      +  
Sbjct: 182 IDFWPVSYDN-PIRIELFDDEVDSIRIFDKDSQRTLEKIDSCEISPVSELLYSENDYDKV 240

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML----ETTGSCQSIENYSRYLTG 451
           +  I ++L+    + +         +  Q I++  E L        +   ++NYS     
Sbjct: 241 ISNINKDLEAFSKKTDDSLNQKLIDKYRQIISFIKESLFVANGDLINPYRLDNYS----- 295

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
                   T  +YI +++++  D+    +              +   E G          
Sbjct: 296 --------TFLDYIDKNAIIAFDDISRILDNHERFNEDFLDNLSLQMENGEV-------- 339

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--PVEIRSART--- 566
              F  +  +R    V SAT    +LE    I +  I++ + L +P   +EI++  +   
Sbjct: 340 ---FRTFENVR----VPSAT-IYKKLEDYSTINLTSILKKSKLFNPKKIIEIKTIESENF 391

Query: 567 --QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
             +V+   D     A +   IL+     +  + L +   E++ 
Sbjct: 392 NQKVDYFVDRTIELANKDSNILILSSNDKSRQQLHQAYIEKDF 434



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 69/196 (35%), Gaps = 21/196 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV-----EDVYDEINLA 578
            + +SATP    L+          IR    +D   E R    + V       +   I   
Sbjct: 777 VLTLSATPIPRTLQMSLSG-----IRDLSTLDEAPEERMPVNSYVIEYDSGIIKQAIERE 831

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +  ++          E L + + +         +H  +   +  EI+ D   GK D+L
Sbjct: 832 LNRNGQVYFVYNRINDIEILYKQIQDLVPEANISIIHGRISPKQIEEIMLDFIDGKIDIL 891

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +   ++  G+DI     + + DAD  G  +    L Q  GR  R+  S    +     K 
Sbjct: 892 LSTTIIETGMDIANVNTMIVYDADTMGLGQ----LYQLKGRIGRSNRSSYAYFTYRTGK- 946

Query: 697 IQLAIDETTRRREKQL 712
               + E + +R K +
Sbjct: 947 ---VLSEISEKRLKSI 959


>gi|309790907|ref|ZP_07685449.1| transcription-repair coupling factor [Oscillochloris trichoides
           DG6]
 gi|308227021|gb|EFO80707.1| transcription-repair coupling factor [Oscillochloris trichoides
           DG6]
          Length = 1171

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/476 (16%), Positives = 171/476 (35%), Gaps = 51/476 (10%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A   L + + +  + Q +  V  + +   +A +    + P + +  N   A +   + +
Sbjct: 15  PACEALARSLATGPRQQRVAPVPNAARVPLVAALSLHSRTPLLYVTLNADAALRAADDLR 74

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL---LERND 271
            +   +AV Y+             P +D    +  S  +++   R    + L   L+   
Sbjct: 75  QWLGPDAVLYY-------------PASDAMPYEHMSPGDEVIAQRLRVLQLLATDLQPPV 121

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V    + +    S    +   + L+    + Q+ LL +LV + Y+        G    
Sbjct: 122 ILVAPLKALLQPTLSRAELASASMTLQRDAVLNQERLLRTLVARGYRPTSAVTAPGEINR 181

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++++PS  +D   R+  FG++IE +  F P T +  + ++   I        P   
Sbjct: 182 RGGIVDLWPS-ADDRPLRIEFFGDEIESLRRFDPATQRSDQRLDAASISPPHE--IPLWN 238

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
              A+ +I+         L+      EAQ   +     LE L      +    Y+ +   
Sbjct: 239 REQALAWIES--------LDCTDLRREAQAEWE---AALERLRAGERFEGRAFYAPFF-R 286

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
              G   PTL +++P + L+ + E+H+     S + +    ++  L E    LP+     
Sbjct: 287 APVGPASPTLLDHLPPECLVLLSEAHMLALHASELAQHAEAQRFKLIE-QHELPAAFPRP 345

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWEL-EQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVE 569
            L ++                 ++ L +         +  P  G  D          Q  
Sbjct: 346 YLNWD--ESGLDQVR------AAYRLVDLSHNEEASALAPPVFGAADH------FGGQFR 391

Query: 570 DVYDEINLAAQQGLRIL-LTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERI 622
            +  +I    + G R++ +T    R+ E ++E L+       +  +H  ++   R+
Sbjct: 392 RLISDIVTRLRAGERVVAITAQAARLQELVSEELHGAPTPAAFVAIHGMIEAGWRL 447



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 76/200 (38%), Gaps = 25/200 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV----EDVYDEINLAA 579
            + ++ATP    L           IR   ++D P E R   +T V    E +  E  L  
Sbjct: 763 VLTLTATPIPRTLHMAMAG-----IRDLSVIDTPPEDRIPVKTYVTPYDETLIREAILRE 817

Query: 580 QQGLRILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            +    +  V  +      +A  L   + E NI V   H ++   E  +++ D   G+ D
Sbjct: 818 LERNGQVYFVHNRVQSIYHVANHLRNLVPEANIGVG--HGQLNERELEQVMIDFFEGRHD 875

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV   ++  GLD+     + I DA   G  +    L Q  GR  R+ N           
Sbjct: 876 VLVCTTIIESGLDVSSANTMIIDDATNFGLAQ----LYQLRGRVGRSANRAYAYLFYKGD 931

Query: 695 KSIQLAIDETTRRRE-KQLE 713
           +++    +E  +R E  Q  
Sbjct: 932 RAMT---EEAQQRLEAIQEA 948


>gi|300812086|ref|ZP_07092534.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496925|gb|EFK31999.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 1158

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/523 (15%), Positives = 185/523 (35%), Gaps = 83/523 (15%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           SR K  LL GV        +   +  + +P +++  N+  A + Y++       + +E F
Sbjct: 21  SRIKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERYNDLSRLLADDDLELF 80

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
               +          T T +     ++ +I  +       L  R   ++ +     Y + 
Sbjct: 81  ALDGNL--------ATQTAVSSPDELSSRIQCLNLL----LSGRPGVVIATPQGLQYPLS 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +   + +      +GD +   +L   L +  Y R+++ +  G F + GD ++++P   E 
Sbjct: 129 APALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRES 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+  FG++I+ I  F   + + +  +    + A S +V     L+ A + +  +L  
Sbjct: 189 -PLRLEFFGDEIDTIKTFDLTSQRSLEELPEATVPAASDHVFTAEDLDRAGRELAGDLPK 247

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                 +  +               E L         + Y  YL   +      +L +Y+
Sbjct: 248 EAAASLEIAQ---------------EALANGQLPDDCDRYLDYLLPES-----FSLLDYL 287

Query: 466 PEDSLLFVDESHVTIPQI--SGMYRGDF-----------HRKATLAEYGFRLPSCMDNRP 512
           P   LL  ++  +    +   G    D+            R+    ++   L +   +R 
Sbjct: 288 PAKGLLLFNDWQLIAESVKNMGAINDDYLASQIASKMMTSRQKLRLDFDAVLKADCHHR- 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
                        + VS             +   +  +         +   +  Q+E + 
Sbjct: 347 -------------LYVSMM--------AHSMGRLRFGQHLAWDSREPQQFFS--QMELLK 383

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            E++  A++G  ++L + ++R AE+     ++ +I   Y+         +     L+ G+
Sbjct: 384 TELDSYAKKGQTVVLQLSSRRQAEEFNRSCHDYDI---YLP--------LAEADGLKEGR 432

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             +++       G  +P+  LV + + +     +     I+T+
Sbjct: 433 AQLVI--GGYASGFVLPDSDLVYLTEKELFNQNKRSKKRIKTL 473



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 67/183 (36%), Gaps = 11/183 (6%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    ++        P++          V +      Q+G 
Sbjct: 759 VLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPIQTYVLEQLPGTVKEACQREMQRGG 818

Query: 584 RILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E+    L + L E  I   Y H ++   +  +I+      +FD+LV  
Sbjct: 819 QVFYLHNRVGDIEETVARLEQLLPEARI--AYAHGQMSENQLEDILSRFLDREFDILVTT 876

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I DAD  G  +    L Q  GR  R+V      +     K +  
Sbjct: 877 TIIETGIDMPNVNTMIIEDADHYGLSQ----LYQLRGRIGRSVRLAYAYFLYQPNKVLTE 932

Query: 700 AID 702
             +
Sbjct: 933 VGE 935



 Score = 45.1 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 4/117 (3%)

Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT 182
              + ++ +    D   F+    Y P+ DQ  A A++   +   +   +LL+G  G GKT
Sbjct: 584 EAEKGFAFSPDGSDQAAFEAAFPYEPTPDQLRATAEIKADMEKAKPMDRLLVGDVGFGKT 643

Query: 183 -FTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
              M    +A+   +    + P  ILA Q Y   K+ F    VE         Q E+
Sbjct: 644 EVAMRAAFKAICDGKQVAFLVPTTILAQQHYQTIKDRFKGFPVEIASFSRFQGQAES 700


>gi|325684691|gb|EGD26845.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 1158

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 79/523 (15%), Positives = 184/523 (35%), Gaps = 83/523 (15%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           SR K  LL GV        +   +  + +P +++  N+  A + Y++       + +E F
Sbjct: 21  SRIKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERYNDLSRLLADDDLELF 80

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
               +          T T +     ++ +I  +       L  R   ++ +     Y + 
Sbjct: 81  ALDGNL--------ATQTAVSSPDELSSRIQCLNLL----LSGRPGVVIATPQGLQYPLS 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +   + +      +GD +   +L   L +  Y R+++ +  G F + GD ++++P   E 
Sbjct: 129 APALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRES 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+  FG++I+ I  F   + + +  +    + A S +V     L+ A + +  +L  
Sbjct: 189 -PLRLEFFGDEIDTIKTFDLTSQRSLEELPEAIVPAASDHVFTAEDLDRAGRELAGDLPK 247

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                 +  +               E           + Y  YL   +      +L +Y+
Sbjct: 248 EAAASLEIAQ---------------EAFANGQLPDDCDRYLDYLLPES-----FSLLDYL 287

Query: 466 PEDSLLFVDESHVTIPQI--SGMYRGDF-----------HRKATLAEYGFRLPSCMDNRP 512
           P   LL  ++  +    +   G    D+            R+    ++   L +   +R 
Sbjct: 288 PAKGLLLFNDWQLIAESVKNMGAINDDYLASQIASKMMTSRQKLRLDFDAVLKADCHHR- 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
                        + VS             +   +  +         +   +  Q+E + 
Sbjct: 347 -------------LYVSMM--------AHSMGRLRFGQHLAWDSREPQQFFS--QMELLK 383

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            E++  A++G  ++L V ++R AE+     ++ +I   Y+         +     L+ G+
Sbjct: 384 TELDSYAKKGQTVVLQVSSRRQAEEFNRSCHDYDI---YLP--------LAEADGLKEGR 432

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             +++       G  +P+  LV + + +     +     I+T+
Sbjct: 433 AQLVI--GGYASGFVLPDSDLVYLTEKELFNQNKRSKKRIKTL 473



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    ++        P++          V +      Q+G 
Sbjct: 759 VLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPIQTYVLEQLPGTVKEACQREMQRGG 818

Query: 584 RILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E+    L + L E  I   Y H ++   +  +I+      +FD+LV  
Sbjct: 819 QVFYLHNRVGDIEETVARLEQLLPEARI--AYAHGQMSENQLEDILSRFLDREFDILVTT 876

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            ++  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 877 TIIETGIDMPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 916



 Score = 45.1 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 4/117 (3%)

Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT 182
              + ++ +    D   F+    Y P+ DQ  A A++   +   +   +LL+G  G GKT
Sbjct: 584 EAEKGFAFSPDGSDQAAFEAAFPYEPTPDQLRATAEIKADMEKAKPMDRLLVGDVGFGKT 643

Query: 183 -FTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
              M    +A+   +    + P  ILA Q Y   K+ F    VE         Q E+
Sbjct: 644 EVAMRAAFKAICDGKQVAFLVPTTILAQQHYQTIKDRFKGFPVEIASFSRFQGQAES 700


>gi|291556783|emb|CBL33900.1| transcription-repair coupling factor [Eubacterium siraeum V10Sc8a]
          Length = 1175

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 86/497 (17%), Positives = 187/497 (37%), Gaps = 67/497 (13%)

Query: 170 VQLLLGVTGSGKTFTMAKV-IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
             L+ G++   K   +A +  E +  P +V+  ++  AA+L  +        A   F   
Sbjct: 28  PLLVTGLSHIHKAHFLASLCYEKLPSPVLVITESEASAAKLTEDINTMCGDTAAYQF--- 84

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
                     P +D  +    + +++ +  R     + L     +++SS      +   +
Sbjct: 85  ----------PASDMTLADTEAQSQEYEYKRIETLSAALSGKARLIISSSEAAVQLTVPK 134

Query: 289 SY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
               +  V LK GD ++  EL  +LV   Y R D+   +G F   G   +I+P    D  
Sbjct: 135 DVLKKHTVTLKAGDEIKLDELAKTLVSAGYTRCDMIEGKGQFSFRGSLADIYPV-SSDYP 193

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+ ++G++I+ ++ F   T ++I  V+++ I      +     L+  ++ + E+ +   
Sbjct: 194 VRIELWGDEIDTVASFDIDTQRRIDTVKSVSITPCGETIFEEGVLSGTLQTLLEKTEKNK 253

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
            + ++  +         RI  D+  L    S   +  Y            P ++F+Y   
Sbjct: 254 KKNDEAAK---------RIRRDIARLRDGISVCCLNRYFPLCYK-----EPGSIFDY--- 296

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
            S L V ES        G           L E G  L   +D                 +
Sbjct: 297 ASTLIVSESFTAAEAAKGAISAHLEDLKLLTEDG-VLCKGLDRY---------------L 340

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGL-VDPPVEIRSAR-----TQVEDVYDEINLAAQQ 581
           +S       ++    + ++  IR  G+ +   +++ S +      + + +++E++  ++ 
Sbjct: 341 MSKAEYQDTVKNKVRLYMDTFIRGGGIDLSDILKVDSIQLSAWSGEYKMLFEELDNYSRN 400

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G   ++   T + A+ L E L+++  +  Y           +  +   LG+  + V   +
Sbjct: 401 GYSCVIFGGTDKAAKILAEDLHDKGYKADY----------AKNPKKFYLGR--ITVVEGI 448

Query: 642 LREGLDIPECGLVAILD 658
           L  G + PE  +  +  
Sbjct: 449 LSAGFEYPEEKIAVLTR 465



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 70/194 (36%), Gaps = 18/194 (9%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI    +I        P+           +   IN   ++  
Sbjct: 767 VLTLSATPIPRTLNMAMSGIRDMSVIETPPGDRHPITTYVVEHDRGVIAQAINKELRRNG 826

Query: 584 RILLTVLTKRM----AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++             A D+   + E NI +   H  +   E +++ R L  G+ DVLV  
Sbjct: 827 QVYYVHNRIESIYSCAADIHSMVPEANIGIA--HGRMSEEELLDVWRRLIEGEIDVLVCT 884

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            L+  G+D+P C  + I +AD  G  +    L Q  GR  R        +     K +  
Sbjct: 885 TLIETGVDVPNCNTLIIENADCMGLAQ----LHQLRGRVGRTNRRAYAYFTFRRGKVLSE 940

Query: 700 -------AIDETTR 706
                  AI E TR
Sbjct: 941 IATKRLDAIREFTR 954


>gi|256545180|ref|ZP_05472546.1| transcription-repair coupling factor - superfamily II helicase
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399221|gb|EEU12832.1| transcription-repair coupling factor - superfamily II helicase
           [Anaerococcus vaginalis ATCC 51170]
          Length = 1164

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/504 (15%), Positives = 174/504 (34%), Gaps = 59/504 (11%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
            +     L G+T   K      +     +  I++  N+  A +L  E  N    ++  YF
Sbjct: 22  KKLSPIFLHGLTDESKAHIFQTLFTYTGKTLIIICENEKKA-KLMCEDINSLQDDSCMYF 80

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GI 284
            S    Y           Y  K    N +I+  R      L+ ++  I+ +++  +   +
Sbjct: 81  PSTEINY-----------YNIKNLENNNEIN--RIEVLTKLINQDKFIITTTLDALRNKL 127

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
              + +     ++ I   ++ +E+  S ++  Y    +   +G F + G  I+ +P   +
Sbjct: 128 TPRKIFKDKSFKIDIDSELDLREVKKSFIELNYDFTKLVESKGEFSIRGSIIDFWPIEYD 187

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           +   R+ +F  +I+ +  F   T + + N++ I I      +  +      ++ IK+++K
Sbjct: 188 N-PIRIELFDTEIDSMRFFDKDTQRSLENIDEIIIRPTKELIYDKNDYQKIIELIKKDIK 246

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEML----ETTGSCQSIENYSRYLTGRNPGEPPPT 460
                 +         +  Q I+Y  + L    E   +    EN+  +            
Sbjct: 247 ---NISDSSNFTKLKDKYNQIISYLSDSLYIANEDLITPYRNENFDDFF----------- 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
             +Y+ +DS+    + + +I   S              E     PS  + +    + +  
Sbjct: 293 --DYLDKDSIFLFQDLNRSIDNFSQDKEKSDLDFTNQLENEEIFPSFKNIKIDINKIFTN 350

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-VEIRSARTQVEDVYDEINLAA 579
           ++   I+ S             +    II+   +++   +E  +    +E+    IN   
Sbjct: 351 IKSYPIINS----------SSLLKNNNIIKAKKIIELKSIEQENFNKNIENFIFNINSLI 400

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +   + ++    K+  E + E   E NI    +  +              L   ++++  
Sbjct: 401 KNNEKAIIFASDKKSLESIKEIFNENNIGNFSIGLDSD------------LNNTNIILTE 448

Query: 640 NLLREGLDIPECGLVAILDADKEG 663
           N L  G    +  +      D  G
Sbjct: 449 NSLSRGYIFTDKKINVYSHRDIFG 472



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 75/199 (37%), Gaps = 25/199 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVEDVYDEINLAAQQGL 583
            + +SATP    L+          IR    +D P E R    T V +    I   A +  
Sbjct: 771 VLTLSATPIPRTLQLSLTG-----IRDMSTLDEPPERRLPVNTYVLEYDSSIIKRAIEKE 825

Query: 584 R----ILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  V  +     ++  +L E + + NI +   H ++      +I+ D   G  D
Sbjct: 826 LDRDGQVYFVYNRVYNIEKIYNELVELIPDANIAIA--HGQMSAKNLEKIMEDFVNGDID 883

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  G+DI     + + D+D  G  +    L Q  GR  R+  S    +     
Sbjct: 884 ILLATTIIETGMDIQNVNTIIVYDSDMMGLSQ----LYQLKGRIGRSSRSSYAYFTY--- 936

Query: 695 KSIQLAIDETTRRREKQLE 713
            +    + E   +R K ++
Sbjct: 937 -AKGKVLTEIGEKRLKSIK 954


>gi|113954991|ref|YP_730883.1| transcription-repair coupling factor [Synechococcus sp. CC9311]
 gi|113882342|gb|ABI47300.1| transcription-repair coupling factor [Synechococcus sp. CC9311]
          Length = 1180

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 90/514 (17%), Positives = 189/514 (36%), Gaps = 66/514 (12%)

Query: 153 QPAAIA-QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           Q +A++ +L +     +++ L+ G   + +    + +   M +P +V+ P    A +  +
Sbjct: 11  QTSALSGELCERAQRDQRL-LMRGAGRAARALVASALARRMDQPLLVVVPTLEEAGRWTA 69

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
             +      A  Y  S    Y+P  +   T+    +   ++E          ++   ++D
Sbjct: 70  LLELMGWSRAQLYPTSEGSPYEP--FDSTTEITWGQLQVLSE---------LQTDRSKSD 118

Query: 272 CIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             +V++  C+   +   ++ ++    LK GD V+ +EL + L +  Y+R       GT+ 
Sbjct: 119 LAIVATERCLQPHLPPPQTLAEHCRALKKGDLVDLEELSTYLSQLGYERVSTIDQEGTWS 178

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
             GD ++++P   E +  R+  FGN+++++ EF P + + +  V+T+K+           
Sbjct: 179 RRGDIVDVYPVSSE-LPVRLEFFGNELDKLREFDPASQRSLDAVDTLKLTPTGFSPL--- 234

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                   I E L+ ++   +   +LL   ++ +        L   G+ + +    R L 
Sbjct: 235 --------IAEGLREQVP--DDLDQLLSEAQITE--------LLEGGTPEGM----RRLM 272

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
           G    + P +L +Y+P +  + +DE                 + A        LP  +  
Sbjct: 273 GLAW-DAPASLLDYLPAECCIAIDERRHGSAHGQQWLDHAEEQHAE-------LPVSI-- 322

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            PL       +              +         +   RP         + S   Q   
Sbjct: 323 PPLHRPIKEAMELAESFAGFDLAELQEHDSHPNAFDLASRP---------VPSYPNQFGK 373

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + + I    ++   + L       A  L   L E +   R++ +   T     I R +  
Sbjct: 374 LGELIKQHQRERQAVWLLSAQPSRAVAL---LEEHDCITRFVPNAADT---QAIDRLIEQ 427

Query: 631 GKFDVLVGINLLR-EGLDIPECGLVAILDADKEG 663
           G    L        EGL +P   +V + D +  G
Sbjct: 428 GTPVALKTRGTAELEGLQLPAWRVVLLTDREFFG 461



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 70/195 (35%), Gaps = 17/195 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E V   I    
Sbjct: 760 VLTLSATPIPRTLYMSLSGVREMSLITT----PPPLRRPIKTHLAALDDEAVRSSIRQEL 815

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      E++   L E    +++   H ++   E    +     G+ DV++
Sbjct: 816 DRGGQVFYVVPRVEGIEEVAGKLREMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVML 875

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA + G  +    L   +GR+    ++ +    D      
Sbjct: 876 CTTIVESGLDIPRVNTILIEDAHRFGLAQ-LYQLRGRVGRSGVQAHAWLFYPGDASLSEA 934

Query: 698 QLAIDETTRRREKQL 712
                   R R  Q 
Sbjct: 935 AR-----QRLRAIQE 944


>gi|332706023|ref|ZP_08426096.1| transcription-repair coupling factor mfd [Lyngbya majuscula 3L]
 gi|332355283|gb|EGJ34750.1| transcription-repair coupling factor mfd [Lyngbya majuscula 3L]
          Length = 1295

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 142/370 (38%), Gaps = 49/370 (13%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +R++   L G+    K    + + +A QR   V+      A++  ++ +         Y 
Sbjct: 24  NRQQSLSLNGIPRLPKGLVASALAKADQRLLFVVCSTLEEASRWATQLEAMGWDTVHLYP 83

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM---RHSATRSLLER-------NDCIVV 275
            S    Y+P  + P ++    +   + + ++R+   R     S L+        +   +V
Sbjct: 84  TSEASPYEP--FDPESEMTWGQMQVLADLVERLKVDRLPVESSDLQPSLVQRSTHGMAIV 141

Query: 276 SSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           ++ + +   +  V+++    + L  G + + K L   L +  Y+R  +    G +   GD
Sbjct: 142 ATQAALQPHLPPVDAFKPYCLTLNQGMTWDGKNLDQKLAQLGYERVPLVETEGQWSRRGD 201

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH-YVTPRPTLN 393
            +++FP  LE +  R+  FG+++E++ EF P T + +  ++ I +      ++  +    
Sbjct: 202 IVDVFPVALE-LPVRLEWFGDELEQLREFDPATQRSLDKIDGIVLTPTDFGHIISQVLRT 260

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
           +  + I+  L  +  E  +EG+ LE  R    I +D                        
Sbjct: 261 SKAELIQSYLSPQEQESFEEGQSLEGSRRFLGIAFD------------------------ 296

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM----D 509
               P +L +Y+PE++L+ +DE                     L E    LP        
Sbjct: 297 ---QPASLLDYLPENTLIVIDEPEQCAAHCDRWVEHAEE---QLEELNHSLPCLHRYFDH 350

Query: 510 NRPLRFEEWN 519
              L+  ++ 
Sbjct: 351 ALELKVNQFQ 360



 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 77/206 (37%), Gaps = 10/206 (4%)

Query: 510  NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQV 568
            N+  + + +       + +SATP    L      + E  +I     +  P++   +  + 
Sbjct: 874  NQKEKIKSFKTQVD-VLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLSPYKP 932

Query: 569  EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIR 626
            E V   I +   +G ++   V      E++   L E  +  R    H ++   E   I+ 
Sbjct: 933  EAVRTAIRMELDRGGQVFYVVPRVEGIEEVAAELREMILEARIAIAHGQLDPAELESIML 992

Query: 627  DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
                G+ D+LV   ++  GLDIP    + I DA K G  +    L   +GRA    ++ +
Sbjct: 993  TFSNGEADILVCTTIIESGLDIPRVNTIVIEDAHKFGLAQ-LYQLRGRVGRAGIQAHAWL 1051

Query: 687  ILYADTITKSIQLAIDETTRRREKQL 712
            +     +            R R  Q 
Sbjct: 1052 LYPNQKVLSEAAK-----KRLRAIQE 1072



 Score = 41.2 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAP 201
            Y P+ DQ  AI  + + +   R   +L+ G  G GKT   +  + +A+   +    +AP
Sbjct: 735 PYQPTPDQLKAIQDVKRDLESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTSNKQVAFLAP 794

Query: 202 NKILAAQLYSEFKNFFPH 219
             IL  Q Y   K  F  
Sbjct: 795 TTILTQQHYHTIKERFSP 812


>gi|325265261|ref|ZP_08131986.1| transcription-repair coupling factor [Clostridium sp. D5]
 gi|324029440|gb|EGB90730.1| transcription-repair coupling factor [Clostridium sp. D5]
          Length = 1119

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 80/523 (15%), Positives = 173/523 (33%), Gaps = 116/523 (22%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           D+ A   ++         V  + G   S KT  M  + +      I  + +   A + Y 
Sbjct: 9   DELAEYKEIFGRRKKDSGVLQIAGCVNSQKTHLMYALSDGCYYKIIAFSSD-EKAKKAYE 67

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           E++  F    V  +             P  D          + + + R    R++LE  +
Sbjct: 68  EYR--FLDENVYLY-------------PAKDLLFYHADIKGKYLIKQRMEVVRAILEAEE 112

Query: 272 ---------CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
                     ++ +  + + G+ S++  ++  + ++   +++  +L   L    Y+R+D 
Sbjct: 113 KESLDDGGITVITTVDAFLDGMPSLQEIAKRRIHVQGTGTLDFIKLQEKLSAMGYEREDE 172

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
               G F V G  +++FP   E++  R+ ++G++++ I  F   + + I N++ + IY  
Sbjct: 173 IEGPGQFAVRGGILDVFPL-TEELPVRIELWGDEVDSIRTFDVESQRSIENLDEVDIYPA 231

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           + +                                               L  +G C S 
Sbjct: 232 AEF-----------------------------------------------LGESGKCVSF 244

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
            +Y              +L          F+DE    I  +  +     + +   AE G 
Sbjct: 245 LDYFP---------RAKSLL---------FLDEPPRLIEHVDEVAEEYQNSRRNRAEAG- 285

Query: 503 RLPSCMDNRPLRFEEWN--CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
                 +  P  F              +  T       +C G      +R T  +     
Sbjct: 286 ---MQEEEEPDVFSTKEIVEKMNQYYGIGLTTLE---SKCGGFH----VRDTYSLQTK-G 334

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +       E +  ++    + G R++L   ++  A  L E L + ++   Y         
Sbjct: 335 VNPYNNSFEMLTRDLKRLKRNGYRVILLSGSRTRARRLAEDLRDYDLSSFY--------- 385

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             ++ R+++ G+  ++V    + EG + P    + I + D  G
Sbjct: 386 SEDMHREVQSGE--IMVAYGHVAEGYEYPMLKFMVISETDIFG 426



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 72/186 (38%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      I +  ++    +   P++        E V + I     +  
Sbjct: 722 VLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDRMPIQTYVMEYNDEMVREAIERELSRDG 781

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++           D+   + +   +  V + H ++   +   I+ D   G  DVLV   +
Sbjct: 782 QVYYVYNRVSDIADVAGRIQKLVPDAAVSFAHGQMNERQLENIMYDFINGDIDVLVSTTI 841

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-- 699
           +  GLDI     + I DAD+ G L     L   +GR++R   + ++   D + K +    
Sbjct: 842 IETGLDISNVNTMIIHDADRLG-LSQLYQLRGRVGRSSRMAYAFLLYRKDKLLKEVAEKR 900

Query: 700 --AIDE 703
             AI E
Sbjct: 901 LAAIRE 906


>gi|152985046|ref|YP_001347529.1| transcription-repair coupling factor [Pseudomonas aeruginosa PA7]
 gi|150960204|gb|ABR82229.1| transcription-repair coupling factor [Pseudomonas aeruginosa PA7]
          Length = 1148

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 128/322 (39%), Gaps = 39/322 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   + +R  +++  +   A +L  E + F P   V +F  + +    +
Sbjct: 21  LPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRFFAPDLPVLHFPDW-ETLPYD 79

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D   ++ +++  Q+ ++RH             VV   + ++ +          +
Sbjct: 80  VFSPHQDIISQRIAAL-YQLPQLRHGVL----------VVPISTALHRLAPTRFLLGSSL 128

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L IG  ++ + +   L    Y+  D     G F V G  I++FP   E + +R+ +F +
Sbjct: 129 VLDIGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-LPFRIDLFDD 187

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +IE +  F P T + I  VE+I++     +   +  +                     GR
Sbjct: 188 EIETLRTFDPETQRSIDKVESIRLLPAREFPLNKEAVTGF-----------------RGR 230

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
             E   ++ R     + L +  +   IE Y          E   TLF+Y+P+D+ +F   
Sbjct: 231 FRERFDVDYRRCPIYQDLASGLTPSGIEYYLPLFF-----EETATLFDYLPQDTQVF--- 282

Query: 476 SHVTIPQISGMYRGD-FHRKAT 496
           S   I Q +  + GD   R   
Sbjct: 283 SLPGIEQAAEQFWGDVRSRYED 304



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V       Q   + + +     +G 
Sbjct: 752 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQQNAVIKEALLRELLRGG 811

Query: 584 RILLT---VLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T      DL E + E  I +   H ++   E  +++ D    +F+VLV  
Sbjct: 812 QVYYLHNEVKTIEKCARDLAELVPEARIGIG--HGQMHERELEQVMSDFYHKRFNVLVAS 869

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           + +
Sbjct: 870 TIIETGIDVPSANTILIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPRRQM 923



 Score = 41.2 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 4/131 (3%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTF 183
               ++  +   D   F     +  + DQ +AI  ++   +  R   +L+ G  G GKT 
Sbjct: 578 AREGFAFKDPQADYATFSAGFPFEETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTE 637

Query: 184 T---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
                A V     +   V+ P  +LA Q Y+ F++ F    V   V        E     
Sbjct: 638 VAMRAAFVAVHSGKQVAVLVPTTLLAQQHYNSFRDRFADWPVNVEVMSRFKSAKEVESAA 697

Query: 241 TDTYIEKESSI 251
                 K   +
Sbjct: 698 RQLAEGKIDIL 708


>gi|332654772|ref|ZP_08420514.1| transcription-repair coupling factor [Ruminococcaceae bacterium
           D16]
 gi|332516115|gb|EGJ45723.1| transcription-repair coupling factor [Ruminococcaceae bacterium
           D16]
          Length = 1164

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 81/509 (15%), Positives = 178/509 (34%), Gaps = 57/509 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             QLL  +   +    + G+    +    A +  A +RP +V+  ++    ++  +   F
Sbjct: 14  FQQLLAALDGGQSPAAVSGLGAVHRAHFAAALGAASERPVVVVCADEGECERMARDLAFF 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                           Q    +          ++++ Q +  R     +LLE     +V+
Sbjct: 74  TG--------------QSVPVLTARQFTFHNAATVSHQWEHRRLKLLWALLEGELPCLVA 119

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           SV  +       +   Q  ++L  G  ++  +L + L    Y R       G F + G  
Sbjct: 120 SVEALQQRTLPPDVLKQATLELATGQQIDLNDLAARLTAAGYSRCQQVEGPGQFALRGGI 179

Query: 336 IEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
           +++F P+   D   R   +G++++ +  F P T ++  N++   +   +  +        
Sbjct: 180 LDVFSPAM--DAPVRAEFWGDEVDAMGSFDPATQRRTENLDRAVLLPGAETLPQLAPGGL 237

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
                  +   R+ + EK+G     + L+  +  D E LE   S  +++ Y   +     
Sbjct: 238 GGLLALLD--KRIAKAEKDG----HKELKATLEADREALEQGRSLPAVDRYLPLIYPTLA 291

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
                   +Y+P D+ +   ES     +             TL E G  L     +    
Sbjct: 292 TAA-----DYLPLDACVLFSESSRVAERAKTYQWQMEEDVKTLLERG-ELDGSCGDLSRS 345

Query: 515 FEEWNCLR---PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART-QVED 570
           F + N +    P   + S T  ++               P  ++    +   +    +E 
Sbjct: 346 FAQLNQVLENWPVAYLDSFTLSTY------------PTPPRCVLSLMAKQLPSFGASLET 393

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
              +++     G  +L+ V +++ A +L   L E+ +      S  KTL +         
Sbjct: 394 AVQDLSHYQSAGFGVLVLVSSEQRALNLQTLLREQKVTSGVEFSP-KTLPK--------- 443

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDA 659
               +++ +  L  G++ P+  L  + + 
Sbjct: 444 -PGQIMLTVGGLSGGMEYPDLKLAVVTEG 471



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 8/175 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI     +        PV+          V D +    ++G 
Sbjct: 774 VLTLSATPIPRTLNMAMSGIRDMSTLEEPPADRLPVQTYVLEHNWPVVADAMRRELERGG 833

Query: 584 RILLT---VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           ++      V T        + +      V   H ++      +++  +  G+ +VLV   
Sbjct: 834 QVYYLHNRVETIDRTAARIQQMLGETAAVGVAHGKMSQEAIDDVMSRMTDGELNVLVCTT 893

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           ++  G+D+P    + I DAD  G  +    L Q  GR  R+             K
Sbjct: 894 IIETGIDLPNANTLIIEDADHLGLAQ----LHQLRGRVGRSNRRAYAYLTYRRGK 944


>gi|88808865|ref|ZP_01124374.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 7805]
 gi|88786807|gb|EAR17965.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 7805]
          Length = 1180

 Score =  164 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 89/513 (17%), Positives = 185/513 (36%), Gaps = 64/513 (12%)

Query: 153 QPAAIA-QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           Q +A++ +L   +   +++ LL G   + +    + +     RP +V+ P    A +  +
Sbjct: 11  QTSALSGELCDRLDRSDRL-LLRGAGRAARALVASAMARHQDRPLLVVVPTLEEAGRWTA 69

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
                   +A  Y  S    Y+P  + P ++    +   ++E          +   + ND
Sbjct: 70  LLDLMGWRSAQLYPTSEGSPYEP--FDPTSEITWGQLQVLSE---------LQVEGQSND 118

Query: 272 CIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             +V++  C+   +   +  +     L+ GD+++ + L  SL +  Y+R       GT+ 
Sbjct: 119 LAIVATERCLQPHLPPPQVLADRCRTLRKGDTLDLEVLALSLSQLGYERVSTIDQEGTWS 178

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
             GD +++FP   E +  R+  FG++++++ EF P + + +  ++++++           
Sbjct: 179 RRGDIVDVFPVSSE-LPVRLEFFGDELDKLREFDPASQRSLDPIDSLRLTPTGFSPL--- 234

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                   I E L+  +   +   +LL  Q L +        L   G+ + +    R L 
Sbjct: 235 --------IAEALRESMP--DGLDQLLNEQALNE--------LLDGGTPEGM----RRLL 272

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
           G    E P +L +Y+P    + +DE           +         L      LP    +
Sbjct: 273 GLAWQE-PASLLDYLPAACCVAIDERRHGRSHGDQWFDHAEEHHGDL-----GLPLPKLH 326

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
           RP+              ++      EL++              L   PV       Q   
Sbjct: 327 RPIDEAMALADAFRGFDLA------ELQEKDDHP-----NAFDLNSRPVSAYP--NQFGK 373

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + + I    ++   + L       A  L   L E +   R++ +         ++     
Sbjct: 374 LGELIKGYQKEKQAVWLLSAQPSRAVAL---LEEHDCVSRFVPNAADAAAIERLVEQSTP 430

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                    +L  EGL +P   +V I D +  G
Sbjct: 431 VALKTRGTADL--EGLQLPAWRVVLITDREFFG 461



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 17/195 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E +   I    
Sbjct: 760 VLTLSATPIPRTLYMSLSGVREMSLITT----PPPLRRPIKTHLAALDEEAIRSAIRQEL 815

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      ED+   L +    +++   H ++   E    +     G+ DV++
Sbjct: 816 DRGGQVFYVVPRVEGIEDVAGQLRQMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVML 875

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA + G  +    L   +GR+    ++ +    +      
Sbjct: 876 CTTIVESGLDIPRVNTILIEDAHRFGLAQ-LYQLRGRVGRSGIQAHAWLFYPGNASLSEA 934

Query: 698 QLAIDETTRRREKQL 712
                   R R  Q 
Sbjct: 935 AR-----QRLRAIQE 944


>gi|302380838|ref|ZP_07269301.1| transcription-repair coupling factor [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311333|gb|EFK93351.1| transcription-repair coupling factor [Finegoldia magna
           ACS-171-V-Col3]
          Length = 1168

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 82/496 (16%), Positives = 174/496 (35%), Gaps = 52/496 (10%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           + GV        +    + + +P +V+  + + A  L +E+ N    N  E+F       
Sbjct: 30  IHGVIKEAFASFVYATSKNIDKPLVVVVEDNMRARNL-TEYLNDIEENICEFF------- 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYS 291
                 P  +       S+++  +  R +    LL     I+V++   +   I       
Sbjct: 82  ------PSRELNFYNAKSLDDNAEDQRVNVLFKLLNNEKFIIVTTFDALTKKITKKSVAK 135

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           +    +K  D +  +EL   L   +Y+R D    +G F + G  ++IFP H      R+ 
Sbjct: 136 KYAFTIKDTDLINLEELQEKLRVLKYERVDTIESKGQFAIRGGIVDIFPVHS-RFPVRIE 194

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL- 410
           +F ++I+ +  F   T + I + + + I + S  +       + +  I++ L  R+    
Sbjct: 195 LFDDEIDSMRFFEVSTQRSIEDCKFVDIISCSELIIEDSKKESIINSIQKNLDKRVDHPI 254

Query: 411 ---EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                +    + ++L + I  DLE      SC        +LT ++      T+F+Y  +
Sbjct: 255 FGENVDNVKDKFEKLMEYIRSDLEYEIDLVSC--------FLTKKDYD----TVFDYFAD 302

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           DS++ +++            +        L E G  L S  +   +   +          
Sbjct: 303 DSIMMIEDLSRCYDIYKEKEKRFLEDFVYLVEKGEVL-SKHEQSLIPISDILKFIKAKTS 361

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
           V+ T                I          +E  +    ++ + + I   + +G + ++
Sbjct: 362 VNIT--------SLVKRTRLIESNAMYQLKTLEAPNFNKNIDSLVENIKSNSLRGFKQIV 413

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
                     L +      I          TLE  +   +++  +  VL+    L  G +
Sbjct: 414 FAANVERKNMLKDLFLTNGIP---------TLEAEDYNANIKSSQ--VLITQKNLPNGFE 462

Query: 648 IPECGLVAILDADKEG 663
           I +   + I   +  G
Sbjct: 463 IKDPKYLIITYKEIFG 478



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 25/199 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVED-----VYDEINLA 578
            + +SATP    L+     +    IR   L++ P E R    T V +     + D I   
Sbjct: 777 VLTLSATPIPRTLQ-----MGLTGIRDMSLLEEPPEDRTPISTYVTEYNPSLIRDAIIRE 831

Query: 579 AQQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             +G +I          +     L E + E NI +   H  +   E   ++ D + G +D
Sbjct: 832 LDRGGQIYFVYNRIEDIDQMEFKLKELVPELNIAIA--HGRMNEKELENVMLDFQDGIYD 889

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  GLDI     + I +ADK G  +    L Q  GR  R+  +    +     
Sbjct: 890 LLLCTTIIETGLDIQNVNTMIIYNADKMGLSQ----LYQLKGRIGRSDRTSFAYFTY--- 942

Query: 695 KSIQLAIDETTRRREKQLE 713
              Q ++ E + +R   ++
Sbjct: 943 -EGQKSLTEISEKRLMAIK 960


>gi|33865711|ref|NP_897270.1| transcriptional-repair coupling factor [Synechococcus sp. WH 8102]
 gi|33632881|emb|CAE07692.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 8102]
          Length = 1192

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 94/561 (16%), Positives = 188/561 (33%), Gaps = 78/561 (13%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
            R+   LL G     +    + + +   RP +++ P    A +  +  +     +A  Y 
Sbjct: 24  ERDARLLLRGAGRISRALVASALAQKEGRPLLLVVPTLEEAGRWTALLELMGWSSASLYP 83

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-I 284
            S    Y+P  + P ++    +   +++ I       T     +    +V++  C+   +
Sbjct: 84  TSEGSPYEP--FDPTSEIIWGQLQVLSDLI------GTDDPAGK---AIVATERCLQPHL 132

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
              ++       LK GD ++  EL  +L +  Y+R       GT+   GD ++I+P   E
Sbjct: 133 PPRQALEATCRTLKKGDELDLDELAETLARLGYERMSTIDQEGTWSRRGDIVDIYPVSSE 192

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
            +  R+  FG +++++ EF P T + +  V+ +++                   ++E + 
Sbjct: 193 -LPVRLEFFGEELDKLREFDPATQRSLDPVDRLQLTPTGFSPLVAD-------QLRESMP 244

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
             L  L                    E L   G+ + +    R L G   G+ P  L +Y
Sbjct: 245 EGLDRLLG--------------DEATEELLEGGTPEGL----RRLMGLAWGQ-PACLLDY 285

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +P  + + +DE    +              + +A     L    + R L +       P 
Sbjct: 286 LPASAAVVIDERRHGVAHGQQWLDHAIDHYSDMAS---ELGLSEEERDLLW-------PA 335

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRS---ARTQVEDVYDEINLAAQ 580
            +  +        E   G  + +++   G  +   +  R       Q   + + I    +
Sbjct: 336 VLQRTIDKAYGLAEAFHGFDMAELLEEDGHPNSFDLASRPMPAYPNQFGKLGELIKGFQK 395

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +   + L       A  L   L E +   R++ +         +I          L    
Sbjct: 396 EKTAVWLISAQPSRAVAL---LEEHDCIGRFVPNPADAPAIERLIEQNTP---VALKSAG 449

Query: 641 LLR-EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
               EGL +P   L  + D +  G         QT+G +          Y     K+   
Sbjct: 450 TAELEGLQLPAWRLALVTDREFFGQ--------QTLGSSG---------YVRRRRKAASR 492

Query: 700 AIDETTRRREKQLEHNKKHNI 720
            +D    R    + H + H I
Sbjct: 493 TVDPNKMRPGDFVVH-RNHGI 512



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 70/195 (35%), Gaps = 17/195 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E V   I    
Sbjct: 772 VLTLSATPIPRTLYMSLSGVREMSLITT----PPPLRRPIKTHLAALDPEAVRSAIRQEL 827

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      ED+   L E    +++   H ++   E    +     G+ DV++
Sbjct: 828 DRGGQVFYVVPRVEGIEDVAAGLREMLPGLKLLVAHGQMAEGELESAMVAFNAGEADVML 887

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA + G  +    L   +GR+    ++ +    +      
Sbjct: 888 CTTIVESGLDIPRVNTILIEDAHRFGLAQ-LYQLRGRVGRSGIQAHAWLFYPGNGSLSDN 946

Query: 698 QLAIDETTRRREKQL 712
                   R R  Q 
Sbjct: 947 AR-----QRLRAIQE 956


>gi|303234885|ref|ZP_07321510.1| transcription-repair coupling factor [Finegoldia magna BVS033A4]
 gi|302494003|gb|EFL53784.1| transcription-repair coupling factor [Finegoldia magna BVS033A4]
          Length = 1168

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 82/496 (16%), Positives = 174/496 (35%), Gaps = 52/496 (10%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           + GV        +    + + +P +V+  + + A  L +E+ N    N  E+F       
Sbjct: 30  IHGVIKEAFASFVYATSKNIDKPLVVVVEDNMRARNL-TEYLNDIEENICEFF------- 81

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYS 291
                 P  +       S+++  +  R +    LL     I+V++   +   I       
Sbjct: 82  ------PSRELNFYNAKSLDDNAEDQRVNVLFKLLNNEKFIIVTTFDALTKKITKKSVAK 135

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           +    +K  D +  +EL   L   +Y+R D    +G F + G  ++IFP H      R+ 
Sbjct: 136 KYAFTIKDTDLINLEELQEKLRVLKYERVDTIESKGQFAIRGGIVDIFPVHS-RFPVRIE 194

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL- 410
           +F ++I+ +  F   T + I + + + I + S  +       + +  I++ L  R+    
Sbjct: 195 LFDDEIDSMRFFEVSTQRSIEDCKFVDIISCSELIIEDSKKESIINSIQKNLDKRVDHPI 254

Query: 411 ---EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                +    + ++L + I  DLE      SC        +LT ++      T+F+Y  +
Sbjct: 255 FGENVDNVKDKFEKLMEYIRSDLEYEIDLVSC--------FLTKKDYD----TVFDYFAD 302

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           DS++ +++            +        L E G  L S  +   +   +          
Sbjct: 303 DSIMMIEDLSRCYDIYKEKEKRFLEDFVYLVEKGEVL-SKHEQSLIPISDILKFIKAKTS 361

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
           V+ T                I          +E  +    ++ + + I   + +G + ++
Sbjct: 362 VNIT--------SLVKRTRLIESNAMYQLKTLEAPNFNKNIDSLVENIKSNSLRGFKQIV 413

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
                     L +      I          TLE  +   +++  +  VL+    L  G +
Sbjct: 414 FAANVERKNMLKDLFLTNGIP---------TLEAEDYNANIKSSQ--VLITQKNLPNGFE 462

Query: 648 IPECGLVAILDADKEG 663
           I +   + I   +  G
Sbjct: 463 IKDPKYLIITYKEIFG 478



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 25/199 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVED-----VYDEINLA 578
            + +SATP    L+     +    IR   L++ P E R    T V +     + D I   
Sbjct: 777 VLTLSATPIPRTLQ-----MGLTGIRDMSLLEEPPEDRTPISTYVTEYNPSLIRDAIIRE 831

Query: 579 AQQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             +G +I          +     L E + E NI +   H  +   E   ++ D + G +D
Sbjct: 832 LDRGGQIYFVYNRIEDIDQMEFKLKELVPELNIAIA--HGRMNEKELENVMLDFQDGIYD 889

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  GLDI     + I +ADK G  +    L Q  GR  R+  +    +     
Sbjct: 890 LLLCTTIIETGLDIQNVNTMIIYNADKMGLSQ----LYQLKGRIGRSDRTSFAYFTY--- 942

Query: 695 KSIQLAIDETTRRREKQLE 713
              Q ++ E + +R   ++
Sbjct: 943 -EGQKSLTEISEKRLMAIK 960


>gi|291531663|emb|CBK97248.1| transcription-repair coupling factor [Eubacterium siraeum 70/3]
          Length = 1171

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 86/495 (17%), Positives = 186/495 (37%), Gaps = 67/495 (13%)

Query: 170 VQLLLGVTGSGKTFTMAKV-IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
             L+ G++   K   +A +  E +  P +V+  ++  AA+L  +        A   F   
Sbjct: 28  PLLVTGLSHIHKAHFLAALCYEKLPSPVLVITESEASAAKLTEDINTMCGDTAAYQF--- 84

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
                     P +D  +    + +++ +  R     + L     +++SS      +   +
Sbjct: 85  ----------PASDLTLADTEAQSQEYEYKRIETLSAALSGKARLIISSSEAAVQLTVPK 134

Query: 289 SY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
               +  V LK GD ++  EL  +LV   Y R D+   +G F   G   +I+P    D  
Sbjct: 135 DVLEKHTVTLKAGDEIKLDELAKTLVSAGYTRCDMIEGKGQFSFRGSLADIYPV-SSDYP 193

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+ ++G++I+ ++ F   T ++I  V+++ I      +     L+  ++ + E+ +   
Sbjct: 194 VRIELWGDEIDTVASFDLDTQRRIDTVKSVSITPCGETIFEEGVLSGTLQTLLEKTEKNK 253

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
            + ++  +         RI  D+  L    S   +  Y            P ++F+Y   
Sbjct: 254 KKNDEAAK---------RIRRDIARLRDGISVCCLNRYFPLCYK-----EPGSIFDY--- 296

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
            S L V ES        G           L E G  L   +D   +   E+       + 
Sbjct: 297 ASTLIVSESFTASEAAKGAISAHLEDLKLLTEDG-VLCKGLDRYLMSKAEYQDTVKNNV- 354

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGL-VDPPVEIRSAR-----TQVEDVYDEINLAAQQ 581
                          + ++  IR  G+ +   +++ S +      + + +++E++  ++ 
Sbjct: 355 --------------RLYMDTFIRGGGIDLSDILKVDSIQLSAWSGEYKMLFEELDNYSRN 400

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G   ++   T + A+ L E L+++  +  Y           +  +   LG+  + V   +
Sbjct: 401 GYSCVIFGGTDKAAKILAEDLHDKGYKADY----------AKNPKKFYLGR--ITVVEGI 448

Query: 642 LREGLDIPECGLVAI 656
           L  G + PE  +  +
Sbjct: 449 LSAGFEYPEEKIAVL 463



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 70/194 (36%), Gaps = 18/194 (9%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI    +I        P+           +   IN   ++  
Sbjct: 767 VLTLSATPIPRTLNMAMSGIRDMSVIETPPGDRHPITTYVVEHDRGVIAQAINKELRRNG 826

Query: 584 RILLTVLTKRM----AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++             A D+   + E NI +   H  +   E +++ R L  G+ DVLV  
Sbjct: 827 QVYYVHNRIESIYSCAADIHSMVPEANIGIA--HGRMSEEELLDVWRRLIEGEIDVLVCT 884

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            L+  G+D+P C  + I +AD  G  +    L Q  GR  R        +     K +  
Sbjct: 885 TLIETGVDVPNCNTLIIENADCMGLAQ----LHQLRGRVGRTNRRAYAYFTFRRGKVLSE 940

Query: 700 -------AIDETTR 706
                  AI E TR
Sbjct: 941 IATKRLDAIREFTR 954


>gi|104773517|ref|YP_618497.1| transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103422598|emb|CAI97201.1| Transcription-repair coupling factor [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 1158

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 80/523 (15%), Positives = 186/523 (35%), Gaps = 83/523 (15%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           SR K  LL GV        +   +  + +P +++  N+  A + +++       + +E F
Sbjct: 21  SRIKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERHNDLSRLLADDDLELF 80

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
           V   +          T T +     ++ +I  +       L  R   ++ +     Y + 
Sbjct: 81  VLDGNL--------ATQTAVSSPDELSSRIQCLNLL----LSGRPGVVIATPQGLQYPLS 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +   + +      +GD +   +L   L +  Y R+++ +  G F + GD ++++P   E 
Sbjct: 129 APALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRES 188

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+  FG++I+ I  F   + + +  +    + A S +V     L+ A + +  +L  
Sbjct: 189 -PLRLEFFGDEIDTIKTFDLTSQRSLEELPEATVPAASDHVFTAEDLDRAGRELAGDLPK 247

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                 +  +               E L           Y  YL  ++      +L +Y+
Sbjct: 248 EAAASLEIAQ---------------EALANGQLPDDCNRYLDYLLSKS-----FSLLDYL 287

Query: 466 PEDSLLFVDESHVTIPQI--SGMYRGDF-----------HRKATLAEYGFRLPSCMDNRP 512
           P   LL  ++  +    +   G    D+            R+    ++   L +   +R 
Sbjct: 288 PAKGLLLFNDWQLIAESVKNMGAINDDYLASQIASKMMTSRQKLRLDFDAVLKADCHHR- 346

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
                        + VS             +   +  +         +   +  Q+E + 
Sbjct: 347 -------------LYVSLM--------AHSMGRLRFGQHLAWDSREPQQFFS--QMELLK 383

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            E++  A++G  ++L V ++R AE+     ++ +I   Y+         +     L+ G+
Sbjct: 384 TELDSYAKKGQTVVLQVSSRRQAEEFNRSCHDYDI---YLP--------LAEADGLKEGR 432

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             +++       G  +P+  LV + + +     +     I+T+
Sbjct: 433 AQLVI--GGYASGFVLPDSDLVYLTEKELFNQNKRSKKRIKTL 473



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    ++        P++          V +      Q+G 
Sbjct: 759 VLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPIQTYVLEQLPGTVKEACQREMQRGG 818

Query: 584 RILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E+    L + L E  I   Y H ++   +  +I+      +FD+LV  
Sbjct: 819 QVFYLHNRVGDIEETVARLEQLLPEARI--AYAHGQMSENQLEDILSRFLDREFDILVTT 876

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            ++  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 877 TIIETGIDMPNVNTMIIEDADHYG-LSQLYQLRGRIGRSAR 916



 Score = 45.9 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 51/131 (38%), Gaps = 6/131 (4%)

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS-RE 168
           I  D   L   +      ++S +    D   F+    Y P+ DQ  A A++   +   + 
Sbjct: 572 IADDLIELYAKREAEKGFAFSPDGS--DQAAFEAAFPYEPTPDQLRATAEIKADMEKAKP 629

Query: 169 KVQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
             +LL+G  G GKT   M    +A+   +    + P  ILA Q Y   K+ F    VE  
Sbjct: 630 MDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHYQTIKDRFKGFPVEIA 689

Query: 226 VSYYDYYQPEA 236
                  Q E+
Sbjct: 690 SFSRFQGQAES 700


>gi|257438137|ref|ZP_05613892.1| transcription-repair coupling factor [Faecalibacterium prausnitzii
           A2-165]
 gi|257199468|gb|EEU97752.1| transcription-repair coupling factor [Faecalibacterium prausnitzii
           A2-165]
          Length = 1155

 Score =  164 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 89/505 (17%), Positives = 165/505 (32%), Gaps = 66/505 (13%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            ++ + +H+      L G+  +G+    A + + + R   ++ P +  A     + K   
Sbjct: 13  QKIAESLHTP-GPAALFGLPPAGRALLYAALQKDLDRVLCIVTPGEAEATHFADDLKALG 71

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
              AV                P  D  +        + +  R S   +L       V   
Sbjct: 72  LTAAV---------------FPPRDFMLRPVEGAGREYEYRRLSVLGALAGGRLNAVCVP 116

Query: 278 VSCIYGI-GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
              +       + + +  + LK G    ++ L++ L    Y R+      G F V GD +
Sbjct: 117 AEALLQYTVPRDEFLRNTLTLKPGMVYNREALVARLFAAGYVRRSQVDGPGQFSVRGDIV 176

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH--YVTPRPTLNT 394
           +I+   +     RV  + ++I+ ++ F  LT ++  ++E I +       + +   T   
Sbjct: 177 DIYAPDM-HQPARVEYWDDEIDSLASFDLLTQRRDGSLEKIYLSPAREVLFGSTAETAEA 235

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
               IK   K R  +     +  EA         DL  L++    ++++ Y      R P
Sbjct: 236 LRGAIK---KARGKKRTAMEKATEA---------DLAQLDSGLMPEAMDKYY---GIRYP 280

Query: 455 GEPPPTLFEYIPEDSLLFV-DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
              P TL +++  DS +FV DE                     L E G   P        
Sbjct: 281 --QPATLLDHL--DSPIFVLDEVGGIRDAQKATEYRRGEELTGLLEEGVLCPGLDVLYQT 336

Query: 514 RFEEWNCLRPTTIVVS--ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
             +     +  + ++      G  E +    I VE    P                +  +
Sbjct: 337 MDDLAIAAQKQSTLLCENFLRGMNEFKLKDLINVEAFAAPN-----------WGGDLASL 385

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            ++++    QG  + L   T + A  LT  L ++   V              + RD+R  
Sbjct: 386 REDLDPLIAQGYAVTLFSGTPKGAAALTRDLTDKGYSVS-------------MSRDVRPA 432

Query: 632 KFDVLVGINLLREGLDIPECGLVAI 656
           K  V V    L  G   P      I
Sbjct: 433 KGIVQVLPGHLTAGCTFPFAHAAVI 457



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 7/176 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI     I    +   PVE          + + +     +G 
Sbjct: 763 MLTLSATPIPRTLNMAMSGIRDLSTIEQPPIERQPVETFVLEYNDVILAEAMKKELARGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E    ++ +     R    H ++   E   + + L  G+ D+LV   L
Sbjct: 823 QVYYLHNRVDNIESTAAHVSQLVPGARVGIAHGKMTEEELNPVWQHLLNGEIDILVCTTL 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  G+D+  C  + I DAD+ G  +    L Q  GR  R+       +     K++
Sbjct: 883 IETGIDVRNCNTLIIEDADRMGLAQ----LYQIRGRVGRSGRKAYAYFTFRRDKTL 934


>gi|77917709|ref|YP_355524.1| transcription-repair coupling factor [Pelobacter carbinolicus DSM
           2380]
 gi|77543792|gb|ABA87354.1| transcription-repair coupling factor [Pelobacter carbinolicus DSM
           2380]
          Length = 1161

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 99/529 (18%), Positives = 193/529 (36%), Gaps = 68/529 (12%)

Query: 144 QTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNK 203
            T+ HP+ D+ AA    L+G+   E    LLG+TG+   F +A+++     P +++A ++
Sbjct: 7   HTELHPALDELAAT---LEGLPHTE----LLGMTGTSCAFVLARLLAENPAPLLILAASQ 59

Query: 204 ILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
             A ++ ++   +       +++ +++    EA +P            +  I+  R +  
Sbjct: 60  EQAVRITADLGFYLGRPDQVFYLPHWEMRPYEALLP------------HPAIEATRLATL 107

Query: 264 RSLLERNDCIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
            +L +     +V +V S +  +      + +   L+  +   ++ LL  L +  Y    +
Sbjct: 108 AALADGRALALVMTVRSVMQRVMPRRVLAGLRSCLREQELHPREALLPHLAELGYHAVPL 167

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIKIYA 381
               GTF V GD ++++P  L +   R+  FG+ IE +  F P T +    ++ ++++  
Sbjct: 168 VEDPGTFSVRGDLLDLYPPTLPE-PVRIEFFGDQIERMRPFDPTTQRSREHHIASLELLP 226

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
               +     L T  +     LK R   L     +   QR        LE          
Sbjct: 227 AREMILAGEHLETFART----LKQRADALG----IARPQR-----EALLEEAREGLLGPG 273

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
              +          +   T+F+Y+    L+ +D     I Q       +           
Sbjct: 274 HSFFMPLCY-----DGLDTIFDYVTGGRLVRLDPP--AIAQEMDRLSDEISEGEHRMANH 326

Query: 502 FRLPSCMDNRPL---RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
             L    D   L      +   L P   V   T   ++LE       EQ  R     +  
Sbjct: 327 GELYLPGDALYLSGNELADSLALLPHIDVT--TLRLYDLE-------EQTPRVALHTESN 377

Query: 559 VEIRSARTQ----VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
            ++RS + Q       +   ++   +Q  R+LL    +  AE L   L  R + +     
Sbjct: 378 ADLRSNQQQDGGLAAQLASRLHGWQKQNWRLLLVCHQQGQAERLQALLAGRGLDLPLRDG 437

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                     I  L  G+   ++ +  L  G  +P+  L  I + +  G
Sbjct: 438 --------IDIAKLEPGRP--VITLGELSSGFRLPDEHLAIITEEEIFG 476



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 99/280 (35%), Gaps = 41/280 (14%)

Query: 528  VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQGLRI 585
            ++ATP    L      + +  +  T  VD  V IR+  ++ +D  +   I    ++G ++
Sbjct: 777  LTATPIPRTLHMSLLGLRDLSVIDTPPVDRQV-IRTYVSRFDDDLIRQAILNELRRGGQV 835

Query: 586  LLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
                   +    + E++        V   H ++       ++ D   GK +VLV   ++ 
Sbjct: 836  FFVHNRVQNIGAMAEFIQSLVPEATVAVGHGQMTEKALEAVMMDFVEGKTNVLVCSTIIE 895

Query: 644  EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
             GLDIP    + +  AD  G  +    L Q  GR  R+ + +   Y     +S    +  
Sbjct: 896  NGLDIPRANTIIVNRADCFGLAQ----LYQLRGRVGRS-HLRAYAYLLIPGES---TLTH 947

Query: 704  TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
              R R                    + E+ +       A+ ++ +      L  K+    
Sbjct: 948  EARERL-----------------RVLTELTELGAGFRIASHDLELRGAGDLLGPKQ-SGQ 989

Query: 764  LKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
            + ++  +M+  A+ L         D I  LK       +D
Sbjct: 990  IAAIGFEMY--AELLE--------DTIAELKGQQREDRID 1019


>gi|224369910|ref|YP_002604074.1| Mfd [Desulfobacterium autotrophicum HRM2]
 gi|223692627|gb|ACN15910.1| Mfd [Desulfobacterium autotrophicum HRM2]
          Length = 1165

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 80/520 (15%), Positives = 167/520 (32%), Gaps = 60/520 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I QLL  I  R+    L GV GSG  +  AK+  +     +V+ P++  A     E + +
Sbjct: 2   IKQLLDTIAKRDTSIDLTGVHGSGSAYITAKLFASNDCSLVVVLPDRKRAMAFMDELEFY 61

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN--DCIV 274
            P                  Y P  +    K  S + +    R +A   LL R     IV
Sbjct: 62  LPKGKRRVI-----------YFPGYNILPFKALSFHSETASKRIAALYKLLSRREHHLIV 110

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
               + +  +   +  +     +   + +++  L++ L    Y R  +    G + V G 
Sbjct: 111 THVDTLLLKMIPRKRLADAADLVINNEEIDRDLLVARLNAGGYIRTSLVEEPGDYSVRGG 170

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            +++F S       R+ +FG+ +E +  F P+T + I++++ I+I   +  V        
Sbjct: 171 ILDVF-SPSATFPVRIELFGDYVESLRFFSPITQRGIKDIQEIEIVPANEAVIDP----- 224

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
                  EL   L  L K G       +  R   D   +   G    +E     +     
Sbjct: 225 ------AELPEILGRLRKAGADAGVDPVVIRGHVDK--IREEGRFPGMEGMLSIVYPEL- 275

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
                +  +Y+P+ +L  ++         +   +       +      RL    ++  + 
Sbjct: 276 ----DSFMDYVPDHALFLLENPLDIEAGATAFEQKARQNYTSALA-ENRLSVTPESLYIE 330

Query: 515 FEEWNCLRPTTIVVSA----------TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           + +          V               ++  +      +   ++  G           
Sbjct: 331 WSQVKSRLFEKKPVCFKRLTMDRRETDSAAFSFDISDNTFLSSTLKGEGK---------T 381

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
               + + D        G R +    +   ++ L   L    +   ++          E 
Sbjct: 382 EALFQPLADWFLDKKNDGSRAVAVCSSTTQSQRLVAILRPYGVEPTFLKG-------FEE 434

Query: 625 IRDLRLGKFDVL-VGINLLREGLDIPECGLVAILDADKEG 663
           + + + G + +       L  G   PE G+  + + +  G
Sbjct: 435 VENQKPGIYCIPGYASGNLTRGFVFPEQGIALVTNQEIFG 474



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 68/196 (34%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  I  T  VD    + S  ++ +D      I    ++G
Sbjct: 771 VLALTATPIPRTLHMSLTGMRDISIISTPPVDRQPIV-SYISEYDDAIAAGAIQKELERG 829

Query: 583 LRILLTVLTKRM----AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +I       +     AE+L + + E  I V   H  +      + +      + D+LV 
Sbjct: 830 GQIFFIHNNIKTIFKTAENLKKLVPEVRIAVA--HGRLNEASLEKAMLQFINREIDMLVC 887

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  GLDIP    + I  AD  G  +      Q  GR  R                + 
Sbjct: 888 TTIVESGLDIPSANTMIINRADMFGLAQIY----QLRGRIGRGEEQAYAYLFVPEEHRLT 943

Query: 699 LAIDETTRRREKQLEH 714
               +  +R    +EH
Sbjct: 944 R---DAQKRLAALMEH 956


>gi|319779214|ref|YP_004130127.1| Transcription-repair coupling factor [Taylorella equigenitalis
           MCE9]
 gi|317109238|gb|ADU91984.1| Transcription-repair coupling factor [Taylorella equigenitalis
           MCE9]
          Length = 1158

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 82/503 (16%), Positives = 177/503 (35%), Gaps = 62/503 (12%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           Q+ K + +  +  +   + GS     ++++    ++   +   + + A +L +E K F  
Sbjct: 14  QIPKNLKTGNRFDIPK-LHGSSDALWISELAREQKKCIAIFCADPLEAHRLLNEIKLFNG 72

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV-VSS 277
              V+ F             P  +T      S ++ +   R      L      +V + +
Sbjct: 73  ELNVQLF-------------PDWETLPYDTFSPHQDLISERLKTLNLLHHSKVDVVLIPA 119

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            + +Y +             K  D + ++ L+S L    Y+  +     G + V G  I+
Sbjct: 120 TTAVYKLSPPSFLGAYSFLFKRRDRINEQALISQLTDANYQHVNQVTASGEYSVRGGIID 179

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           I+P     + +R+ +F ++IE I  F   T +   +V+ +++     Y       NT   
Sbjct: 180 IYPM-GSQIPYRLDLFDDEIETIRTFDVDTQRSALSVDKVQLLPGREYPFDEQARNTFRN 238

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
                      +  ++      + +  R       +    +   IE Y          + 
Sbjct: 239 -----------KFREKFEGDPTKAIPYR------DVGNGINFAGIEYYIPLFF-----DE 276

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
             T+F+Y+P D++        TI  I+              ++   L S  +   L    
Sbjct: 277 TATIFDYLPTDAITL------TIGDINKQISEFHADTQKRYKF---LYSDRERPVL---- 323

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
                P  + ++A     +L + Q + +  I  P   +  P +I   +   E   D INL
Sbjct: 324 ----APHELFLTAEEFFKKLNKFQRLHLSDIASPEIAIKEPPKISVRKRSPEPFADLINL 379

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +    ++LL V +    E L++ LYE  + V         + +   I     G  +  +
Sbjct: 380 LSVNNTKVLLCVDSAGRREILSQRLYESGLSV-------DVVLQNLDIASFISGTANFAM 432

Query: 638 GINLLREGLDIPECGLVAILDAD 660
            +  + +G  + +  +  + + D
Sbjct: 433 VVAPINKGFTLSDIDVHILSEND 455



 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 9/108 (8%)

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           K M E+L   L E  I V   H ++   E   +++D    + ++L+   ++  G+D+P  
Sbjct: 835 KAMLEEL---LPEARIGVA--HGQMSERELEAVMKDFYHQRINLLLCTTIIETGIDVPTA 889

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             + I  ADK G  +    L Q  GR  R+ +           ++I  
Sbjct: 890 NTIIINRADKLGLAQ----LHQLRGRVGRSHHQAYAYLLTPGDEAITR 933


>gi|254412667|ref|ZP_05026440.1| transcription-repair coupling factor [Microcoleus chthonoplastes
           PCC 7420]
 gi|196180402|gb|EDX75393.1| transcription-repair coupling factor [Microcoleus chthonoplastes
           PCC 7420]
          Length = 1192

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 92/532 (17%), Positives = 190/532 (35%), Gaps = 76/532 (14%)

Query: 160 LLKGIHSREKVQLLLGVTGSG---KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           L   + S+   Q  L + G     K    + + +A  R  +V+      A++  ++ +  
Sbjct: 15  LTGELLSKLNRQSSLHLNGIARLPKGLVSSAIAKASDRNLLVICATLEEASRWAAQLEAM 74

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT--------RSLLE 268
                  Y  S    Y+P  + P ++    +   + + +   RHS+T           + 
Sbjct: 75  NWQTVHFYPTSEASPYEP--FNPESEMTWGQMQVLADLV---RHSSTPDSGDTEENHSVT 129

Query: 269 RNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
            N   +V++ + +   +  V++++   + +  G + + K++ + L +  Y R  +  + G
Sbjct: 130 VNGLAIVATHAALQPHLPPVKAFAPYCLTINQGMTRDIKDIDNQLARLGYDRVPLVEMEG 189

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            +   GD +++FP   E +  R+  FG+++E++ EF P + + +  +E + +        
Sbjct: 190 QWSRRGDIVDVFPVAAE-LPVRLEWFGDELEQLREFDPGSQRSLDKIEQLVLTPTDFSPI 248

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
                      I + L     +  +     E Q L Q            G  +     SR
Sbjct: 249 -----------ITDALSDAQAQQVQLHLGEEEQALWQ----------AGGHLEG----SR 283

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
              G    E P +L +Y+P+++++ +DE                    TLA     LP  
Sbjct: 284 RFLGIAF-EQPASLLDYLPDNTVIAIDEPEQCRAHCDRWVEHAQDHLDTLA---HPLP-- 337

Query: 508 MDNRPLRFEEWNCLRPTTIV-------VSATPGSWELE---QCQGIIV-EQIIRPTGLVD 556
               PL  +        T V       +S+TP    L      Q ++   ++   T    
Sbjct: 338 ----PLHRQYAESFNTQTAVRAGFDETLSSTPKQQSLNPPLHTQTLLYLSELAEATNETA 393

Query: 557 PPVEIRS---ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
             +  R       Q   + + +     +   + L       +  L   L E +   +++ 
Sbjct: 394 VNLASRPIPATPHQFAKLAEIVRSERDRKFSVWLVSAQPSRSVSL---LQEHDCPAQFVP 450

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLR--EGLDIPECGLVAILDADKEG 663
           +          I  L++ K  V V  + L   EG  +P   LV + D +  G
Sbjct: 451 NPRDYP----AIDKLQIQKTPVAVKYSGLAELEGFILPTFRLVVMTDREFFG 498



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 19/196 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      + E  +  T    PP   RS +T +     E V   I    
Sbjct: 797 VLTLTATPIPRTLYMSLSGVREMSLITT----PPPSRRSIKTHLAPYNPEAVRTAIRTEL 852

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      E++   L E     R    H ++   E    +     G+ D+L+
Sbjct: 853 DRGGQVFYVVPRVEGIEEVATKLREMIPSARLAIAHGQMPEGELEATMLTFSSGEADILI 912

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKS 696
              ++  GLDIP    + I DA + G  +    L   +GR+    ++ +     DT++ +
Sbjct: 913 CTTIIESGLDIPRVNTILIEDAQRFGLAQ-LYQLRGRVGRSGVQAHAWLFYPKQDTLSDA 971

Query: 697 IQLAIDETTRRREKQL 712
            +       R R  Q 
Sbjct: 972 ARK------RLRAIQE 981



 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 14/164 (8%)

Query: 60  AAKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKN 119
           AA ++ +  R   A     Q     S + ++T+    +T+      L +L    +   + 
Sbjct: 568 AADQVGVLSRYRRADSRAPQLNKMSSKAWEKTKNRVRKTIKKLAVDLLKLYAQRS---QR 624

Query: 120 GKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTG 178
                P  S   +   +          Y P+ DQ  A+  + + +   R   +L+ G  G
Sbjct: 625 SGYAFPEDSSWQDELEESF-------PYQPTPDQLKAVQDVKRDLESDRPMDRLVCGDVG 677

Query: 179 SGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFFPH 219
            GKT    + I  +    +    +AP  IL  Q Y   K  F  
Sbjct: 678 FGKTEVALRAIFKVITSGKQVAFLAPTTILTQQHYHTLKERFAP 721


>gi|291545188|emb|CBL18297.1| transcription-repair coupling factor [Ruminococcus sp. 18P13]
          Length = 1156

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 88/517 (17%), Positives = 176/517 (34%), Gaps = 61/517 (11%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206
           +  +  + +A+ +L K ++         GV+   K   +A +  A   P +V+  +   A
Sbjct: 4   FKDTILELSAVQELQKYLNRGVSPISFSGVSHIHKAQLLAAL--ACDTPGLVVTEDDASA 61

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266
            +L  +       N    F             P  +  +     ++   + MR +A  ++
Sbjct: 62  RRLCDDINLMLGENRALPF-------------PSKEMALTPVEGLSRSYEHMRLAALSAV 108

Query: 267 LERNDCIVVSS-VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
                 ++++S  + +      E   Q  + L  G+  +   L   L    Y R +    
Sbjct: 109 QTGQCALLIASGEALLQPTLPPELLEQCTITLHAGEDYDIGTLAKQLTGCGYVRCEKVEG 168

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
              F V G  +++FP     +  R+  +G+ ++ I+ F   + +++   E + I      
Sbjct: 169 PSQFSVRGALLDVFPVQAA-MPLRLEFWGDTLDSIAPFEVASQRRVDQQEQVTIPPAQET 227

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
           + P+P          E L  ++  L K  R   A  L   +  D E L        I+ Y
Sbjct: 228 LVPQP----------ELLAEKIEALAKSLRGKRAPELRIWLNRDAERLRGGEMLTDIDKY 277

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG---F 502
              L    PG    TL +YIP    +++ E      ++ G           L E G    
Sbjct: 278 LPLLY---PGT--VTLLDYIP--GTVWLSEHMAVQERMRGAQTQYMEDHRMLLEAGTLCK 330

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
            L   +   P   E         +          L+    I   +++    +        
Sbjct: 331 GLEGYLTEVPRMQEMLTERVCVYLDTF-------LQGGDRIPYRELLNIEAMQTA----- 378

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
               ++  + ++++L  +QG R +L   +++    L   L +  I       ++   + +
Sbjct: 379 PWGGEIRQLTEDLSLYCKQGYRTMLVAGSEKTIGILCNDLRDSGIPC-----DIAAPDSV 433

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
                 + G+  VL+ I  L  G   PE     I  A
Sbjct: 434 -----CQPGR--VLLMIGSLTGGFAYPENKTALITQA 463



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 62/176 (35%), Gaps = 11/176 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
            + +SATP    L     GI    +I        PV+   +  +   V            
Sbjct: 762 VLTLSATPIPRTLNMAMSGIRDMSVIEEPPQDRYPVQSYVVEYSDGVVAQALSRELKRGG 821

Query: 581 QGLRILLTVLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q   +   V T     + L   L +  I   Y H ++      +I R L   + D+LV  
Sbjct: 822 QAYYLHNRVETIAACADRLQRLLPDARI--AYAHGQMTEEAMSDIWRQLVDHEIDILVCT 879

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            ++  G+D+P    + I DAD+ G  +    L Q  GR  R+       +     K
Sbjct: 880 TIIETGVDVPNVNTLIIEDADRLGLSQ----LYQLRGRVGRSNRRAYAYFTFRREK 931


>gi|306820708|ref|ZP_07454336.1| conserved hypothetical protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551318|gb|EFM39281.1| conserved hypothetical protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 454

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 75/473 (15%), Positives = 172/473 (36%), Gaps = 48/473 (10%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
              +Q+   I ++    L+ G++     F +  + +   +  + + P+ I +  +Y E K
Sbjct: 12  EEFSQINNAISNKNTPLLINGISTDATAFLINYIHKTQGKNVVFITPSDISSQDIYKELK 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DCI 273
            +     V    S              +    +  + N Q +  R    R + E + D +
Sbjct: 72  KY--SEKVLILQSD-------------ELKFYQIDATNRQNEFSRIRVLRKVYENDYDFL 116

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           +++  SC+      + Y +  + + +    + KEL   L+   Y+R       G F + G
Sbjct: 117 ILTLSSCMRRYMPKKYYDENFIDISLSSKFDLKELSEVLITLGYERVKKVEGIGQFSLRG 176

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             +++F         R+  F ++++ I  F   T      ++ ++I     Y+ P+    
Sbjct: 177 FILDVFTPDNSS-PVRIEFFDDEVDSIRIFDLYTQISTTKIKNVRIIHAREYLYPKN--- 232

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
             +K I E L  ++ +   +            I YD+E ++     + +E Y  +L    
Sbjct: 233 --VKEIAETLFKQITKDANDD-----------IRYDIEKIQNNSYFKGLEKYINFLYPDE 279

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
                 ++F+ I +D  L   E +    +   ++   +    T  + GF L         
Sbjct: 280 D----TSIFDIISKDINLVFSEPNRFFEKSDNIFYEFYENYKTAFKRGFALKGQEKIFFD 335

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS-ARTQVEDVY 572
           R E  + +   +++++           Q     + ++P  +V+  V      R  VE++ 
Sbjct: 336 REEILSHISKHSLILT----------SQFSSSVKKLKPLSMVNMDVTPSPKYRGDVENLI 385

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            ++     +  +++L +  +   + L     E  I V+Y+            I
Sbjct: 386 IDLQNYLTKDYKVMLCINDETTIKKLLSEFKENEILVKYIEKNEDIDISSYNI 438


>gi|167751280|ref|ZP_02423407.1| hypothetical protein EUBSIR_02266 [Eubacterium siraeum DSM 15702]
 gi|167655787|gb|EDR99916.1| hypothetical protein EUBSIR_02266 [Eubacterium siraeum DSM 15702]
          Length = 1175

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 86/497 (17%), Positives = 187/497 (37%), Gaps = 67/497 (13%)

Query: 170 VQLLLGVTGSGKTFTMAKV-IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
             L+ G++   K   +A +  E +  P +V+  ++  AA+L  +        A   F   
Sbjct: 28  PLLVTGLSHIHKAHFLASLCYEKLPSPVLVITESEASAAKLTEDINTMCGDTAAYQF--- 84

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
                     P +D  +    + +++ +  R     + L     +++SS      +   +
Sbjct: 85  ----------PASDLTLADTEAQSQEYEYKRIETLSAALSGKARLIISSSEAAVQLTVPK 134

Query: 289 SY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
               +  V LK GD ++  EL + LV   Y R D+   +G F   G   +I+P    D  
Sbjct: 135 DVLEKHTVTLKAGDEIKLDELATMLVSAGYTRCDMIEGKGQFSFRGSLADIYPV-SSDYP 193

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+ ++G++I+ ++ F   T ++I  V+++ I      +     L+  ++ + E+ +   
Sbjct: 194 VRIELWGDEIDTVASFDIDTQRRIDTVKSVSITPCGETIFEEGVLSGTLQTLLEKTEKNK 253

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
            + ++  +         RI  D+  L    S   +  Y            P ++F+Y   
Sbjct: 254 KKNDEAAK---------RIRRDIARLRDGISVCCLNRYFPLCYK-----EPGSIFDY--- 296

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
            S L V ES        G           L E G  L   +D                 +
Sbjct: 297 ASTLIVSESFTAAEAAKGAISAHLEDLKLLTEDG-VLCKGLDRY---------------L 340

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGL-VDPPVEIRSAR-----TQVEDVYDEINLAAQQ 581
           +S       ++    + ++  IR  G+ +   +++ S +      + + +++E++  ++ 
Sbjct: 341 MSKAEYQDTVKNKVRLYMDTFIRGGGIDLSDILKVDSIQLSAWSGEYKMLFEELDNYSRN 400

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G   ++   T + A+ L E L+++  +  Y           +  +   LG+  + V   +
Sbjct: 401 GYSCVIFGGTDKAAKILAEDLHDKGYKADY----------AKNPKKFYLGR--ITVVEGI 448

Query: 642 LREGLDIPECGLVAILD 658
           L  G + PE  +  +  
Sbjct: 449 LSAGFEYPEEKIAVLTR 465



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 65/206 (31%), Gaps = 42/206 (20%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + +SATP    L      I +            +E         D +       +    
Sbjct: 767 VLTLSATPIPRTLNMAMSGIRDM---------SVIETPPG-----DRHPITTYVVEHDRG 812

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRY-----MHSEVKTL--------ERIEII----RD 627
           ++   + K +  +   Y     I   Y     +HS V              E +    R 
Sbjct: 813 VIAQAINKELRRNGQVYYVHNRIESIYSCAADIHSMVPEANIGIAHGRMSEEELLNVWRR 872

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           L  G+ DVLV   L+  G+D+P C  + I +AD  G  +    L Q  GR  R       
Sbjct: 873 LIEGEIDVLVCTTLIETGVDVPNCNTLIIENADCMGLAQ----LHQLRGRVGRTNRRAYA 928

Query: 688 LYADTITKSIQL-------AIDETTR 706
            +     K +         AI E TR
Sbjct: 929 YFTFRRGKVLSEIATKRLDAIREFTR 954


>gi|306826192|ref|ZP_07459527.1| transcription-repair coupling factor [Streptococcus sp. oral taxon
           071 str. 73H25AP]
 gi|304431668|gb|EFM34649.1| transcription-repair coupling factor [Streptococcus sp. oral taxon
           071 str. 73H25AP]
          Length = 1167

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 86/522 (16%), Positives = 187/522 (35%), Gaps = 58/522 (11%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   +  +++      A ++ S
Sbjct: 12  DQ---IKKWHQNLIDKKR-QLILGLSTSTKALAIASSLEKENK-IVLLTSTYGEAERIIS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +I+ +R     S   +  
Sbjct: 67  DLLSLLGEELVYPFLVDDS--------PMVEFLMSSQEKIISRIEALRFL---SDPSKKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S   + + I+++ +G+  +Q ELL  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPARFKESIIKIAVGEEYDQHELLHRLKEIGYRKVTQVQTQGEFSI 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +  +R+  FG++++ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEMSQLE-PFRIEFFGDEVDGIRTFEVETQLSKENQTELTIFPASDILLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    Q   +  ++L  
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQVHSDSRKFLYL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               +   T+F+YI +D+ +F D+    + Q     R          + G    S M   
Sbjct: 281 CY--DKTWTVFDYIEKDTPVFFDDYQKLMNQYETFERELAQYFTEDLQNGKSF-SDMQYF 337

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
               + +    P T   +   G   L+        Q             ++    Q   +
Sbjct: 338 ADTEQTYKKQSPVTFFSNLQKGLGNLKFDHIYQFNQFP-----------MQEFFNQFSFL 386

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +EI    +    I+L       ++ L + L E  I+   + S  K+    E +  +   
Sbjct: 387 KEEIERYKKMNYTIILQSSNSMGSKTLEDILEEYKIK---LDSRDKSSICKESVNLIE-- 441

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
                     LR G    +  ++ I + +       +    Q
Sbjct: 442 --------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 80/203 (39%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNPSVIR 811

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           D I    ++G ++          +     L E        Y+H ++  ++    + D   
Sbjct: 812 DAILREMERGGQVYYLYNKVDTIDQKVSELQELIPEAAIGYVHGQMSEIQLENTLLDFIE 871

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I YA
Sbjct: 872 GQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYA 924

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
             + +  + +I E + +R + ++
Sbjct: 925 YLMYRP-EKSISEVSEKRLEAIK 946


>gi|291546533|emb|CBL19641.1| hypothetical protein CK1_15270 [Ruminococcus sp. SR1/5]
          Length = 461

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 117/281 (41%), Gaps = 23/281 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A   ++ K   +   +  + G   S K   M  +        +++A ++  A ++Y +++
Sbjct: 12  AEFEEIKKRCGANCGILNVSGCMESQKVHLMYGLSGLFPYH-LILADDERNAKEIYEDYR 70

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
             F    V ++             P  D    +       + R R    R+LLE+ +  V
Sbjct: 71  --FYDKNVYFY-------------PAKDLLFFQADIHGNLLIRQRMRVIRALLEQEEVTV 115

Query: 275 VSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S+  C+  +  +E     ++  K    ++  +L   LV+  Y+R     + G F V G
Sbjct: 116 VTSIDGCMDFLMPLEKIRSRLLHFKSDSVIDLDQLKEELVELGYERTGQVELPGQFSVRG 175

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+I+P   ED  WR+ ++ ++++ I  F   + + + NV+ I IY  +  +     ++
Sbjct: 176 GIIDIYP-LTEDNPWRIELWDDEVDSIRSFDAESQRSLENVDEITIYPAAEKMDGEDMVS 234

Query: 394 TAMKYIKEE----LKMRLIELEKEGRLLEAQRLEQRITYDL 430
               + +E+    L   L  L + G  +E +  + R+  + 
Sbjct: 235 FLDYFPEEKTLVFLDE-LNHLAENGEGVEEEYRQSRMHREE 274



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 26/249 (10%)

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED-SLLFVDE 475
           L    ++   ++D E   +  +   I  Y      +  GE   +  +Y PE+ +L+F+DE
Sbjct: 193 LWDDEVDSIRSFDAESQRSLENVDEITIYPA--AEKMDGEDMVSFLDYFPEEKTLVFLDE 250

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFR-LPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
            +       G+       +    E G   LP          ++    R    V + +P  
Sbjct: 251 LNHLAENGEGVEEEYRQSRMHREEKGEANLPEQWLCGFQELQKKLNRRNCVAVSALSP-- 308

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
               +    I E+       VD      S  +  E +  ++     QG RI L   ++  
Sbjct: 309 ---RRSGWKINEEFDLTVKSVD------SYNSSFELLVKDLLQYKSQGYRIALLSGSRTR 359

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE L + L E  +   Y           ++ R +  G+  ++V     R G   P     
Sbjct: 360 AERLAKDLSEEGLNAFY---------SQDMDRIISPGE--IMVVYGHARRGFQYPLIKFA 408

Query: 655 AILDADKEG 663
            + + D  G
Sbjct: 409 VMTETDIFG 417


>gi|296388503|ref|ZP_06877978.1| transcription-repair coupling factor [Pseudomonas aeruginosa PAb1]
          Length = 1148

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 124/323 (38%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   + +R  +++  +   A +L  E + F P   V +F          
Sbjct: 21  LPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRFFAPDLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMI 294
              P  +T      S ++ I   R +A   L +    ++V  +S  ++ +          
Sbjct: 71  ---PDWETLPYDVFSPHQDIISQRIAALYQLPQLKHGVLVVPISTALHRLAPTRFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + +   L    Y+  D     G F V G  I++FP   E + +R+ +F 
Sbjct: 128 LVLDVGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-LPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE+I++     +   +  +                     G
Sbjct: 187 DEIETLRTFDPETQRSIDKVESIRLLPAREFPLNKEAVTGF-----------------RG 229

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           R  E   ++ R     + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 230 RFRERFDVDYRRCPIYQDLASGLTPSGIEYYLPLFF-----EETATLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D   R   
Sbjct: 283 -SLPGIEQAAEQFWNDVRSRYED 304



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V       Q   + + +     +G 
Sbjct: 752 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQQNAVIKEALLRELLRGG 811

Query: 584 RILLT---VLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T      DL E + E  I +   H ++   E  +++ D    +F+VLV  
Sbjct: 812 QVYYLHNEVKTIEKCARDLAELVPEARIGIG--HGQMHERELEQVMSDFYHKRFNVLVAS 869

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           + +
Sbjct: 870 TIIETGIDVPSANTILIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPRRQM 923



 Score = 40.8 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTF 183
               ++  +   D   F     +  + DQ +AI  ++   +  R   +L+ G  G GKT 
Sbjct: 578 AREGFAFKDPQADYASFSAGFPFEETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTE 637

Query: 184 T---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
                A V     +   V+ P  +LA Q Y+ F++ F    V
Sbjct: 638 VAMRAAFVAVHSGKQVAVLVPTTLLAQQHYNSFRDRFADWPV 679


>gi|107102552|ref|ZP_01366470.1| hypothetical protein PaerPA_01003616 [Pseudomonas aeruginosa PACS2]
          Length = 1148

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 124/323 (38%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   + +R  +++  +   A +L  E + F P   V +F          
Sbjct: 21  LPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRFFAPDLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMI 294
              P  +T      S ++ I   R +A   L +    ++V  +S  ++ +          
Sbjct: 71  ---PDWETLPYDVFSPHQDIISQRIAALYQLPQLKHGVLVVPISTALHRLAPTRFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + +   L    Y+  D     G F V G  I++FP   E + +R+ +F 
Sbjct: 128 LVLDVGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-LPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE+I++     +   +  +                     G
Sbjct: 187 DEIETLRTFDPETQRSIDKVESIRLLPAREFPLNKEAVTGF-----------------RG 229

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           R  E   ++ R     + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 230 RFRERFDVDYRRCPIYQDLASGLTPSGIEYYLPLFF-----EETATLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D   R   
Sbjct: 283 -SLPGIEQAAEQFWNDVRSRYED 304



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V       Q   + + +     +G 
Sbjct: 752 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQQNAVIKEALLRELLRGG 811

Query: 584 RILLT---VLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T      DL E + E  I +   H ++   E  +++ D    +F+VLV  
Sbjct: 812 QVYYLHNEVKTIEKCARDLAELVPEARIGIG--HGQMHERELEQVMSDFYHKRFNVLVAS 869

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           + +
Sbjct: 870 TIIETGIDVPSANTILIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPRRQM 923



 Score = 40.8 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTF 183
               ++  +   D   F     +  + DQ +AI  ++   +  R   +L+ G  G GKT 
Sbjct: 578 AREGFAFKDPQADYATFSAGFPFEETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTE 637

Query: 184 T---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
                A V     +   V+ P  +LA Q Y+ F++ F    V
Sbjct: 638 VAMRAAFVAVHSGKQVAVLVPTTLLAQQHYNSFRDRFADWPV 679


>gi|254235976|ref|ZP_04929299.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
           C3719]
 gi|126167907|gb|EAZ53418.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
           C3719]
          Length = 1148

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 124/323 (38%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   + +R  +++  +   A +L  E + F P   V +F          
Sbjct: 21  LPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRFFAPDLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMI 294
              P  +T      S ++ I   R +A   L +    ++V  +S  ++ +          
Sbjct: 71  ---PDWETLPYDVFSPHQDIISQRIAALYQLPQLKHGVLVVPISTALHRLAPTRFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + +   L    Y+  D     G F V G  I++FP   E + +R+ +F 
Sbjct: 128 LVLDVGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-LPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE+I++     +   +  +                     G
Sbjct: 187 DEIETLRTFDPETQRSIDKVESIRLLPAREFPLNKEAVTGF-----------------RG 229

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           R  E   ++ R     + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 230 RFRERFDVDYRRCPIYQDLASGLTPSGIEYYLPLFF-----EETATLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D   R   
Sbjct: 283 -SLPGIEQAAEQFWNDVRSRYED 304



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V       Q   + + +     +G 
Sbjct: 752 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQQNAVIKEALLRELLRGG 811

Query: 584 RILLT---VLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T      DL E + E  I +   H ++   E  +++ D    +F+VLV  
Sbjct: 812 QVYYLHNEVKTIEKCARDLAELVPEARIGIG--HGQMHERELEQVMSDFYHKRFNVLVAS 869

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           + +
Sbjct: 870 TIIETGIDVPSANTILIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPRRQM 923



 Score = 41.6 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 4/131 (3%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTF 183
               ++  +   D   F     +  + DQ +AI  ++   +  R   +L+ G  G GKT 
Sbjct: 578 AREGFAFKDPQADYATFSAGFPFEETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTE 637

Query: 184 T---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
                A V     +   V+ P  +LA Q Y+ F++ F    V   V        E     
Sbjct: 638 VAMRAAFVAVHSGKQVAVLVPTTLLAQQHYNSFRDRFADWPVSVEVMSRFKSAKEVENAA 697

Query: 241 TDTYIEKESSI 251
            +    K   +
Sbjct: 698 REFPPGKIDIL 708


>gi|116051004|ref|YP_790170.1| transcription-repair coupling factor [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|313108292|ref|ZP_07794324.1| transcription-repair coupling factor [Pseudomonas aeruginosa 39016]
 gi|115586225|gb|ABJ12240.1| transcription-repair coupling factor [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310880826|gb|EFQ39420.1| transcription-repair coupling factor [Pseudomonas aeruginosa 39016]
          Length = 1148

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 124/323 (38%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   + +R  +++  +   A +L  E + F P   V +F          
Sbjct: 21  LPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRFFAPDLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMI 294
              P  +T      S ++ I   R +A   L +    ++V  +S  ++ +          
Sbjct: 71  ---PDWETLPYDVFSPHQDIISQRIAALYQLPQLKHGVLVVPISTALHRLAPTRFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + +   L    Y+  D     G F V G  I++FP   E + +R+ +F 
Sbjct: 128 LVLDVGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-LPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE+I++     +   +  +                     G
Sbjct: 187 DEIETLRTFDPETQRSIDKVESIRLLPAREFPLNKEAVTGF-----------------RG 229

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           R  E   ++ R     + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 230 RFRERFDVDYRRCPIYQDLASGLTPSGIEYYLPLFF-----EETATLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D   R   
Sbjct: 283 -SLPGIEQAAEQFWNDVRSRYED 304



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V       Q   + + +     +G 
Sbjct: 752 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQQNAVIKEALLRELLRGG 811

Query: 584 RILLT---VLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T      DL E + E  I +   H ++   E  +++ D    +F+VLV  
Sbjct: 812 QVYYLHNEVKTIEKCARDLAELVPEARIGIG--HGQMHERELEQVMSDFYHKRFNVLVAS 869

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           + +
Sbjct: 870 TIIETGIDVPSANTILIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPRRQM 923



 Score = 40.8 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTF 183
               ++  +   D   F     +  + DQ +AI  ++   +  R   +L+ G  G GKT 
Sbjct: 578 AREGFAFKDPQADYATFSAGFPFEETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTE 637

Query: 184 T---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
                A V     +   V+ P  +LA Q Y+ F++ F    V
Sbjct: 638 VAMRAAFVAVHSGKQVAVLVPTTLLAQQHYNSFRDRFADWPV 679


>gi|15598198|ref|NP_251692.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
           PAO1]
 gi|218890799|ref|YP_002439663.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
           LESB58]
 gi|9949103|gb|AAG06390.1|AE004725_3 transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
           PAO1]
 gi|218771022|emb|CAW26787.1| transcription-repair coupling protein Mfd [Pseudomonas aeruginosa
           LESB58]
          Length = 1148

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 124/323 (38%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   + +R  +++  +   A +L  E + F P   V +F          
Sbjct: 21  LPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRFFAPDLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMI 294
              P  +T      S ++ I   R +A   L +    ++V  +S  ++ +          
Sbjct: 71  ---PDWETLPYDVFSPHQDIISQRIAALYQLPQLKHGVLVVPISTALHRLAPTRFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + +   L    Y+  D     G F V G  I++FP   E + +R+ +F 
Sbjct: 128 LVLDVGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-LPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE+I++     +   +  +                     G
Sbjct: 187 DEIETLRTFDPETQRSIDKVESIRLLPAREFPLNKEAVTGF-----------------RG 229

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           R  E   ++ R     + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 230 RFRERFDVDYRRCPIYQDLASGLTPSGIEYYLPLFF-----EETATLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D   R   
Sbjct: 283 -SLPGIEQAAEQFWNDVRSRYED 304



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V       Q   + + +     +G 
Sbjct: 752 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQQNAVIKEALLRELLRGG 811

Query: 584 RILLT---VLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T      DL E + E  I +   H ++   E  +++ D    +F+VLV  
Sbjct: 812 QVYYLHNEVKTIEKCARDLAELVPEARIGIG--HGQMHERELEQVMSDFYHKRFNVLVAS 869

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           + +
Sbjct: 870 TIIETGIDVPSANTILIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPRRQM 923



 Score = 40.8 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTF 183
               ++  +   D   F     +  + DQ +AI  ++   +  R   +L+ G  G GKT 
Sbjct: 578 AREGFAFKDPQADYATFSAGFPFEETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTE 637

Query: 184 T---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
                A V     +   V+ P  +LA Q Y+ F++ F    V
Sbjct: 638 VAMRAAFVAVHSGKQVAVLVPTTLLAQQHYNSFRDRFADWPV 679


>gi|322386426|ref|ZP_08060055.1| transcription-repair coupling factor [Streptococcus cristatus ATCC
           51100]
 gi|321269512|gb|EFX52443.1| transcription-repair coupling factor [Streptococcus cristatus ATCC
           51100]
          Length = 1167

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 85/531 (16%), Positives = 190/531 (35%), Gaps = 73/531 (13%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
              IA   K +    + QL++G++ S K   +A  +E  ++  +V+  ++  A +L S+ 
Sbjct: 14  NQQIADWKKQLQKNTR-QLVMGLSASTKALAIASSLEEQEK-ILVITSSQNEAERLASDL 71

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERND 271
            +      V  F+               DT + +    +++    R  A   L   E+N 
Sbjct: 72  ISLLGEEKVYTFL-------------ADDTPLAEFVFSSQEKIFARLEAMNFLSDKEKNG 118

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            ++++  +    +   + + +  + L +       +L+ SL +  YK+    + +G + +
Sbjct: 119 ILIINVAASRLLLPQPDIFKKSELILSVSKEYNLDKLVKSLSRNGYKKVSQVLSQGEYSL 178

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF    +   +R+  FG++I+ I  F P     + NVE I I   +  +     
Sbjct: 179 RGDILDIFERSAQ-YPYRIEFFGDEIDGIRIFNPENQLSLENVEEILIEPVTDLLFTEED 237

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                K ++  L   +    K              +Y  E+L +        +  ++L+ 
Sbjct: 238 YAKGRKNLETALSTVIDPSLK--------------SYLEEVLSSAREQFHHADIRKFLSL 283

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG-------DFHRKATLAEYGFRL 504
               E   T+ +Y+P  + +F D+    + + +            D      L+   +  
Sbjct: 284 FYQKE--WTILDYLPTHTPIFFDDFQKIMDKHAQFELEVANILTDDLQNSKALSNQQY-- 339

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                     ++++   +P T   +   G   L+        Q         P  E  S 
Sbjct: 340 ------FANNYQDYRKYKPATFFSNFHKGLGNLKFDALYQFNQY--------PMQEFFS- 384

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EIN   +    ++L   +    + L + L +  I + Y+            
Sbjct: 385 --QFPLLKEEINRFRKSDYTVVLQANSASSLQSLHKTLQDYEIHLDYI------------ 430

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            ++  + +  V +    L +G +  +  +V I + +       +    Q I
Sbjct: 431 -KEKDIHEKAVQLIEGNLVQGFNFVDEKIVLITEHEMIQKKIKRRIRRQNI 480



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          + D +     +G 
Sbjct: 766 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNKTVIRDAVLREIDRGG 825

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E    +L E + E +I   Y+H ++  +     + D   G++D+LV  
Sbjct: 826 QVYYLYNKVDTIEQKVSELKELIPEASI--GYVHGQMSEVRLENTLLDFVNGEYDILVTT 883

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I +AD  G L +   L   +GR+ R      I YA  + +  + 
Sbjct: 884 TIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDKS 936

Query: 700 AIDETTRRRE 709
             + + +R E
Sbjct: 937 LTEVSEKRLE 946


>gi|254448008|ref|ZP_05061472.1| transcription-repair coupling factor [gamma proteobacterium
           HTCC5015]
 gi|198262434|gb|EDY86715.1| transcription-repair coupling factor [gamma proteobacterium
           HTCC5015]
          Length = 1162

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 85/490 (17%), Positives = 170/490 (34%), Gaps = 65/490 (13%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+     +A+     +  ++V+A +   A QL    + F+    +       +   P 
Sbjct: 24  LYGNSMALAIAQAASQHKGLSVVIADSPQQAWQLEQAIRFFYRAERL-----GDESEAPV 78

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
            + P  +T      S ++ I   R S    L   +   +++ + S +  IG V+   Q  
Sbjct: 79  LHFPDWETLPYDVFSPHQDIISERLSTLYQLPRLQRGLLIIPATSLLQRIGPVDYIEQQA 138

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
               +GD+V+  +L   L +  Y+     +  G F V G  +++FP   +   +R+ +F 
Sbjct: 139 FVASVGDTVDLNQLRQRLEQAGYQCVSQVMEHGEFAVRGALLDLFPM-GQAQPFRIDLFD 197

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE I  F P T +     + I +     +        +A+   +   + R        
Sbjct: 198 DEIETIRTFDPETQRSTGQHQHINLLPAREFPFNP----SAIDDFRSAWRERFE------ 247

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  L  R       +        IE Y          E   TLF+Y+PE++LLF  
Sbjct: 248 -GDPQNALIYR------NISEGQLPSGIEYYLPLFF-----ERTATLFDYLPENALLFC- 294

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
                    +G +           ++ +        RPL       L P  + +     +
Sbjct: 295 ---------AGQFESAAEHFWQQLDHRYEQRRHNTERPL-------LSPQELFIEPEALT 338

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVED--------VYDEINLAAQQGLRI 585
             +     I ++ +    G      + R   R Q+E         +   I+   +    +
Sbjct: 339 QGIAAFPRISLQAVELTDGEQRHNFQTRQPPRLQLESRAETPSERLRQHIDQCRRDNRPL 398

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L    +    E L+E L +        HS       ++   +L   +  + + +  L +G
Sbjct: 399 LFVAESAGRREGLSELLRDLGYIA---HS-------LQSWDELDAAQHPISISVAPLDKG 448

Query: 646 LDIPECGLVA 655
           L++P   +V 
Sbjct: 449 LELPNLSIVC 458



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H ++   E  +++ D    + ++LV   ++  G+D+P    + I  AD+ G  +    L 
Sbjct: 856 HGQMSERELEQVMLDFYHQRVNLLVCTTIIESGIDVPTANTIIINRADRFGLAQ----LH 911

Query: 673 QTIGRAARNVNSKVILYADTITKSI 697
           Q  GR  R+ +           K++
Sbjct: 912 QMRGRVGRSHHRAYAYLMAPPEKAM 936



 Score = 37.4 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 51/154 (33%), Gaps = 15/154 (9%)

Query: 70  ENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSW 129
              + +     +       KQ    ++Q    + + LA          + G+ +   +  
Sbjct: 547 SGASPESAPLHKLGSDTWGKQKARAAKQARDVAAELLAI---HARRAARQGRSFQIPQP- 602

Query: 130 SINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---M 185
                  +   F     +  + DQ  AI  +L  +   +   +++ G  G GKT      
Sbjct: 603 -------EYNLFASDFPFEETPDQLNAIEAVLDDLVKIQPMDRVVCGDVGFGKTEVALRA 655

Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           A V    Q+   ++ P  +LA Q +  F +    
Sbjct: 656 AFVAAMNQKQVCILVPTTLLAQQHFQNFSDRLAD 689


>gi|312865767|ref|ZP_07725989.1| transcription-repair coupling factor [Streptococcus downei F0415]
 gi|311098642|gb|EFQ56864.1| transcription-repair coupling factor [Streptococcus downei F0415]
          Length = 1169

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 78/510 (15%), Positives = 179/510 (35%), Gaps = 59/510 (11%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
             QL++G++G+ K+  +A    A Q   +++  ++  A  L  +       + V  F + 
Sbjct: 26  GRQLVMGLSGASKSLAIAGNFLANQGKLVILTASQNEAENLAGDLVGLLGDDQVYQFFAD 85

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
            D    E  V   +  + +  S+N  +D            ++  +V S +     + + +
Sbjct: 86  -DIVGAEFIVASQEKSLSRVESLNFLLD----------ETKSGVLVTSLLGARVLLPNPK 134

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            Y+  ++   +    +   L  +L    YK+    +  G F   GD ++I+     D A+
Sbjct: 135 DYASFVLSFTVSQDYDLTSLAKTLTSLGYKKVSQVLSPGEFSQRGDILDIYDGRT-DQAY 193

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
            +  FG++++ +  F P + + + N+++  +      V  +              +  L 
Sbjct: 194 CLEFFGDELDGLRIFDPESQKSLENLDSFTLSPVDEAVLTQENR-----------RKALA 242

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           ELE E    +  +L+  +      L      Q  + +  Y       +   +L +Y+P+ 
Sbjct: 243 ELELELERAQNAQLKDYLEGLYTTLADGHRHQDFKKFLSYFY-----DKSYSLLDYLPQG 297

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLR---PTT 525
           + +F D+      + + +     +      +        + N+    + +  LR   P T
Sbjct: 298 TPVFFDDFQKLTDRNAKLNLEIANYLTENLQQA----KAVSNQVYFADIFQDLRNYQPAT 353

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
              +   G   +   +     Q             ++    Q+  + DE+N   + G  +
Sbjct: 354 FFSNFHKGLGNIRFQKVYNFTQYA-----------MQEFFNQLPLLVDEVNRYLKTGATV 402

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           +L   ++   E L E L E    +  + S+            +  G+  +      L  G
Sbjct: 403 ILQADSQSKLEKLQEDLREYACNLPIVPSD-----------GIVEGQAQL--SQASLTNG 449

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTI 675
               +  LV I + +       +    Q +
Sbjct: 450 FYFADQKLVLITEKEIFHKTPKRRIRRQNV 479



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 77/184 (41%), Gaps = 9/184 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     T    + + I     +G 
Sbjct: 765 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPGMIREAIIREIDRGG 824

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +           +    +L E + E NI V  +H ++  ++    + D   G +DVLV  
Sbjct: 825 QAFYVYNRVETIDRKAMELQELVPEANIGV--VHGQMSEIQLENTLFDFLDGVYDVLVAT 882

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI-TKSIQ 698
            ++  G+D+P    + + +AD+ G L +   L   +GR+ R   + ++   D + +++ +
Sbjct: 883 TIIETGIDMPNVNTLFVENADQMG-LSTLYQLRGRVGRSNRIAYAYLMYQPDKVLSEASE 941

Query: 699 LAID 702
             +D
Sbjct: 942 KRLD 945


>gi|121535095|ref|ZP_01666912.1| transcription-repair coupling factor [Thermosinus carboxydivorans
           Nor1]
 gi|121306345|gb|EAX47270.1| transcription-repair coupling factor [Thermosinus carboxydivorans
           Nor1]
          Length = 1109

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 62/310 (20%), Positives = 112/310 (36%), Gaps = 23/310 (7%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+ Q L    +  K  L+ G+TG+ K+  +A       R   ++  +    +QL S+  
Sbjct: 12  KALQQALAACTAANKASLIYGLTGTQKSVLLAAAYHKKPRATFIITVSGESLSQLKSDLA 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
              P               P   +P  D      ++ + ++   R      LL     IV
Sbjct: 72  TLLP-------------AAPVLELPALDFVTFSVTAKSLELTAQRLDIYSRLLGGEPVIV 118

Query: 275 VSSVSCIYGIGSV-ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           +++   I       E      V L  G  V+ ++LL++LV+  Y+R D     G F   G
Sbjct: 119 LATAEAIMQKAPPKEELVNSRVSLAAGGIVQLEKLLATLVRFGYERVDQVDNVGQFSARG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+IFP +      R+ +FG++I+ + EF P T + I  ++   I              
Sbjct: 179 GIIDIFPLNR-PYPLRLELFGDEIDSLREFDPATQRSIGALDKADIMPIIEPEHSGKRTT 237

Query: 394 TAMKYIKE-----ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
                  +     +   R+ E     +L++     +R  Y    +       ++  Y   
Sbjct: 238 VLSYLPADGCVVFDEPARVRE--AMAKLIKENPEIKRRVYTWPDIAAAAQAFNVV-YLSL 294

Query: 449 LTGRNPGEPP 458
           L  + P   P
Sbjct: 295 LLQKTPYTEP 304



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 17/201 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     G     II        PV+        E V D I    ++G 
Sbjct: 701 VLTLSATPIPRTLHMSLVGARDMSIIETPPEERYPVQTYVVEYHEEVVRDAIRRELRRGG 760

Query: 584 RILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++   V  +     +M   L+E L +  I V   H ++       ++ D   G +D+LV 
Sbjct: 761 QV-YFVYNRVQTIDKMHSRLSEILPDARIGVA--HGQMSEDRLERVMLDFYEGNYDILVC 817

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +++  GLD+P    + + DADK G  +    L Q  GR  R        +     K   
Sbjct: 818 TSIIESGLDVPNANTIIVYDADKFGLAQ----LYQMRGRVGRTHRMAYAYFTYQRDK--- 870

Query: 699 LAIDETTRRREKQLEHNKKHN 719
             + E   +R + ++   +  
Sbjct: 871 -VLTEVAEKRLQAIKEFAELG 890



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 71/231 (30%), Gaps = 43/231 (18%)

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519
           T+  Y+P D  +  DE       ++ + + +   K  +  +     +      +      
Sbjct: 237 TVLSYLPADGCVVFDEPARVREAMAKLIKENPEIKRRVYTWPDIAAAAQAFNVVYLSLLL 296

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
              P T      PG       +GI                       Q+E + DE+    
Sbjct: 297 QKTPYT-----EPGEIHSITAKGIA------------------PFHRQMEMLVDELKAWL 333

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            + L+ ++ +  +  A  L   L +  +   +           E +  L  G   V++ +
Sbjct: 334 DRKLQPVIFMTNRDKAVHLQHNLTQEGVSAVF----------SEQLTTLVPGT--VMITV 381

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            +L  G ++P   L  + + D  G         Q  G   R    + I Y 
Sbjct: 382 GVLAGGFELPHAKLAVLTEKDIFG--------RQKKGIRPRAAKGQQITYF 424



 Score = 38.9 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 87/279 (31%), Gaps = 57/279 (20%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           ++    ++  +    + L  L  +    +  G  + P   W           F+    Y 
Sbjct: 501 QKATSRAKAAVADLAKELIALYAARQ--VTPGFAFEPDTPWQKE--------FEEAFPYE 550

Query: 149 PSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKI 204
            + DQ  AI+++ + + + R   +LL G  G GKT   +    +A+   +   V+ P  +
Sbjct: 551 ETPDQLQAISEIKRDMEAPRPMDRLLCGDVGFGKTEVAIRAAFKAVMSGKQVAVLVPTTV 610

Query: 205 LAAQLYSEFKNFFPH-----NAVEYFVSYYDYYQPEAYVPR--TDTYIEKESSINEQ--- 254
           LA Q Y  F + F       + +  F S  +     A V     D  I     +N     
Sbjct: 611 LAQQHYQTFSSRFAGFGPVVDVISRFRSPKEQKATLAKVRAGQVDVLIGTHRLLNPDVQF 670

Query: 255 ----------------------------IDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
                                       ID +  SAT      +  +V +    I     
Sbjct: 671 KDLGLLIVDEEQRFGVAQKEKLKKWRTNIDVLTLSATPIPRTLHMSLVGARDMSIIETPP 730

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSL-----VKQQYKRQ 320
            E Y      ++  + V +  +   L     V   Y R 
Sbjct: 731 EERYPVQTYVVEYHEEVVRDAIRRELRRGGQVYFVYNRV 769


>gi|307324345|ref|ZP_07603553.1| transcription-repair coupling factor [Streptomyces violaceusniger
           Tu 4113]
 gi|306890076|gb|EFN21054.1| transcription-repair coupling factor [Streptomyces violaceusniger
           Tu 4113]
          Length = 1236

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 88/556 (15%), Positives = 172/556 (30%), Gaps = 67/556 (12%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+A+ ++G     + Q+ L    + + F +A +  +  RP + +      A  L +  +
Sbjct: 66  PALAEAVRGAADGHRPQVDLVGPPAARPFAIAALARSAGRPVLAVTATGREAEDLAAALR 125

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +  P + V  + S+ +    E   PR+DT   + +     + R+ H            +V
Sbjct: 126 SLLPPDTVVEYPSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPRQDDPAAGPVSVV 180

Query: 275 VSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           V+ V  +      G+G +E        L+ G + + +E++  L    Y R ++   RG F
Sbjct: 181 VAPVRSVLQPQVKGLGDLEPV-----SLRAGGTADLEEIVDGLAAAAYSRVELVEKRGEF 235

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTP 388
            V G  +++FP   E+   R+  +G+DIEEI  F     + +   E  +        +  
Sbjct: 236 AVRGGILDVFPP-TEEHPLRIEFWGDDIEEIRYFKVADQRSLEVAEHGLWAPPCRELL-- 292

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
                         L  ++ E                +   L  +    + + +E+ +  
Sbjct: 293 --------------LTDQVRERAAALAEA-----HPELGELLGKIAEGIAVEGMESLAPV 333

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYGFRLP 505
           L           L + +P+ S+  V E          +    +            G   P
Sbjct: 334 LVDEMEL-----LLDVLPKGSMTVVCEPERVRTRAADLVATSQEFLQASWAATAGGGEAP 388

Query: 506 ---SCMDNRPLRFEEWNCLRPTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVE 560
                   R +            +  S +P     EL Q             G+      
Sbjct: 389 IDVGAASLRGIADVRDRARELGMMWWSVSPFAADEELTQTLAADAAGDTVKLGMHATE-- 446

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
             S R        +       G R +        A    E L    I  R +  ++  ++
Sbjct: 447 --SYRGDTARALADTKGWLADGWRTVYVTEGHGPASRTVEVLGGEGIAAR-LDGDLTEIK 503

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
                         V V    +  G   P   L  + + D  G   +     +   R  +
Sbjct: 504 -----------PSVVHVSCGSIDYGFVDPALKLAVLTETDLSGQKAAGKDGARMPARRRK 552

Query: 681 NVNSKVILYADTITKS 696
            ++   +   D I   
Sbjct: 553 TIDPLTLEAGDFIVHE 568



 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 66/202 (32%), Gaps = 19/202 (9%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
             + +SATP    LE     I E     + +  PP E     T V     + +   I    
Sbjct: 837  VLSMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEQKQIGAAIRREL 892

Query: 580  QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +  ++          +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 893  LREGQVFYIHNRVESIDRAAAKLREIVPEARIATAHGQMSETALEQVVVDFWEKKFDVLV 952

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  G+DI     + +   D  G  +    L Q  GR  R  +     +     K  
Sbjct: 953  STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRDRGYAYFLYPPEKP- 1007

Query: 698  QLAIDETTRRREKQLEHNKKHN 719
               + ET   R   +  + +  
Sbjct: 1008 ---LTETAHERLATIAQHTEMG 1026


>gi|87302159|ref|ZP_01084984.1| transcription-repair coupling factor [Synechococcus sp. WH 5701]
 gi|87283084|gb|EAQ75040.1| transcription-repair coupling factor [Synechococcus sp. WH 5701]
          Length = 1187

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/321 (19%), Positives = 121/321 (37%), Gaps = 36/321 (11%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G   + +    + +     RP +V+ P    A +  +  +      A  Y  S    Y
Sbjct: 31  LSGAGRAARALITSALARRGGRPLVVIVPTLEEAGRWAALLELMGWPTAQLYPTSEGSPY 90

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           +P  + P ++    +   + E ID        S       IV +  +    +    + + 
Sbjct: 91  EP--FDPTSEITWGQLQVLGELID-------GSGRSWAGAIVATERALQPHLPPPAALAA 141

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             + L+ G SV+ +EL  +L +  Y+R       G++   GD +++FP   E +  R+  
Sbjct: 142 RCLSLRKGSSVDLEELADTLTRLGYERVPTIEQEGSWSRRGDIVDVFPVSAE-LPVRLEF 200

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG D+E++ EF P T + +  +E +++    +              ++E +   L EL  
Sbjct: 201 FGEDLEKLREFDPATQRSLDAIEAVRLTPTGYGPLIAD-------ALRESMPEALTELLA 253

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
              L              E L   G+ + +    R L G    E P +L +Y+P  +L+ 
Sbjct: 254 SEAL--------------EQLLEGGTPEGM----RRLMGLAW-EQPASLLDYLPGATLIA 294

Query: 473 VDESHVTIPQISGMYRGDFHR 493
           VDE    +      +      
Sbjct: 295 VDERRQGLAHGQQWFDHASDH 315



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 70/195 (35%), Gaps = 17/195 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E V   I    
Sbjct: 767 VLTLSATPIPRTLYMSLSGVREMSLITT----PPPLRRPIKTHLAALDEEAVRSAIRQEL 822

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      E++   L E    +++   H ++   E    +     G+ DV++
Sbjct: 823 DRGGQVFYVVPRVEGIEEVAGQLREMLPGLKLLVAHGQMGEGELESAMVAFNAGEADVML 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + + DA K G  +    L   +GR+    ++ +    D      
Sbjct: 883 CTTIIESGLDIPRVNTILVEDAHKFGLAQ-LYQLRGRVGRSGVQAHAWLFYPGDASLSEA 941

Query: 698 QLAIDETTRRREKQL 712
                   R R  Q 
Sbjct: 942 AR-----QRLRAIQE 951



 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 26/160 (16%)

Query: 69  RENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQS-----DNPLLKNGKIW 123
           R +T S  E    + ++ +  + +E + + +      L +L          P   +G  W
Sbjct: 549 RASTDSPPELNRMAGVAWT--RAKERARKAVRKVAMDLVKLYAERQQAAGFPFPADG-PW 605

Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT 182
                 S                Y P+ DQ  AIA++ + +   E   +L+ G  G GKT
Sbjct: 606 QGELEDSF--------------PYEPTPDQVKAIAEVKRDMEKPEPMDRLVCGDVGFGKT 651

Query: 183 -FTMAKVIEAMQ--RPAIVMAPNKILAAQLYSEFKNFFPH 219
              +  V +A+   +   ++AP  +LA Q +      F  
Sbjct: 652 EVAIRAVFKAVTAGKQCALLAPTTVLAQQHWRTLSERFAP 691



 Score = 39.3 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI-NLLREGL 646
           TVL ++    L+E      ++V  ++    T ER  I+  LR G  DV+VG   LL +G 
Sbjct: 675 TVLAQQHWRTLSERFAPYPLKVALLNRFRTTAERKTILDGLRDGTVDVVVGTHQLLSKGT 734

Query: 647 DIPECGLVAILDADKEG 663
              + GL+ + +  + G
Sbjct: 735 SFEKLGLLVVDEEQRFG 751


>gi|295101119|emb|CBK98664.1| transcription-repair coupling factor [Faecalibacterium prausnitzii
           L2-6]
          Length = 1161

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 85/493 (17%), Positives = 157/493 (31%), Gaps = 63/493 (12%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
               L G+  +G+    A + +   R   V+ P +  A     + K      AV      
Sbjct: 23  GPAALFGLPPAGRALLYAALQKDTGRILCVVTPGEAEATHFADDLKTLGLSAAV------ 76

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV- 287
                     P  D  +        + +  R S   +L       V      +       
Sbjct: 77  ---------FPPRDFMLRPVEGAGREYEYRRLSVLGALAGGRLNAVCVPAEALLQYTVPQ 127

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           + + +  + LK G    ++ L+  L    Y R+      G F V GD ++I+   +   A
Sbjct: 128 DEFQKNTLTLKPGMVYNREALVERLFAAGYVRRSQVDGPGQFSVRGDIVDIYAPDMRQPA 187

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            RV  + ++I+ ++ F  LT ++   +E I +      +               +    L
Sbjct: 188 -RVEYWDDEIDSLASFDLLTQRRDGALEKIYLSPAREVLFGS----------TADTAEAL 236

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY--SRYLTGRNPGEPPPTLFEYI 465
              +K+ R      LE+ + +DL  L++    ++++ Y   RY       E P TL +++
Sbjct: 237 RAAQKKARGKRRTALEKAMEFDLAQLDSGVMPEAMDKYYGLRY-------ETPATLLDHL 289

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
               +  +DE                     L E G   P          +     +  +
Sbjct: 290 SSP-IFILDEVGGIRDAQKATEFRRSEELTGLLEEGVICPGLDVLYQTMDDLAIAAQDQS 348

Query: 526 IVVS--ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            ++      G  E +    I  E    P                +  + ++++   QQG 
Sbjct: 349 TLLCENFLRGMNEFKLKDLINAEAFAAPN-----------WGGDLASLREDLDPLVQQGY 397

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
            + L   T + A  LT  L ++   V              + RD+R  K  V V    L 
Sbjct: 398 AVALFAGTPKGAAALTRDLADKGYAVS-------------MSRDVRPAKGLVQVLPGHLT 444

Query: 644 EGLDIPECGLVAI 656
            G   P   +  I
Sbjct: 445 AGCTFPFARVAVI 457



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 7/176 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI     I    +   PVE          + + +     +G 
Sbjct: 762 MLTLSATPIPRTLNMAMSGIRDLSTIEQPPIERQPVETFVLEYNDVILAEAMKKELARGG 821

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E    ++ +     R    H ++   E   + + L  G+ D+LV   L
Sbjct: 822 QVYYLHNRVDNIESCAAHVSQMVPGARVGIAHGKMTEEELNPVWQHLLNGEIDILVCTTL 881

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  G+D+  C  + I DAD+ G  +    L Q  GR  R+       +     K++
Sbjct: 882 IETGIDVRNCNTLIIEDADRMGLAQ----LYQIRGRVGRSGRKAYAYFTFRRDKTL 933


>gi|222528653|ref|YP_002572535.1| transcription-repair coupling factor [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455500|gb|ACM59762.1| transcription-repair coupling factor [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 1141

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 86/500 (17%), Positives = 180/500 (36%), Gaps = 58/500 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              L + +  +    ++ GV   GK   +  + E   + A+ +       A+L  E +  
Sbjct: 11  FKTLEEIVAKKSLPVVVTGVGEMGKALVVKYLCEKFNKKALFIT---TQRAKLEWERRFK 67

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              ++V       + Y            +    S + +I R+     +   +  D ++++
Sbjct: 68  NLFSSVVNLQERENPY-----------VVSFAKSRDSEITRIE-QFVKIFEDGFDVLILT 115

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + +       ++    +   L  G  ++ + L+  L+   Y+R      +G F   G  +
Sbjct: 116 AQNLFEKYTDLKLDCIL---LTEGLDIQLETLIGKLLTFGYERVKTVEKKGQFSQKGGIV 172

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +I+P        R+  FG+ I+ I  F   T +     ++IKIY    +   +   +  +
Sbjct: 173 DIYPV-ASTYPVRIEFFGDTIDTIRLFDVETQKSFEKKDSIKIYKAIEWDL-QEDFSEGL 230

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           K+IK++ K    +L++E R    + LE+     +E +        +E    Y       +
Sbjct: 231 KHIKDDYKKTKSKLKEESR----KNLEETFKEVIEGIRL-----DVERLYPYYY-----Q 276

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              ++ +   E  L+FVDE       +    +      + L E GF LP   +      E
Sbjct: 277 QFLSVIDIFSE-CLIFVDEYSQVYNSLKAFEQETQEIFSDLLEKGFVLPKMAECYFTTSE 335

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
               L  + I+ +      ELE    I            +   E+ S   Q E + D++ 
Sbjct: 336 VLEKLSRSIILQTFVSAIKELELKDII----------SFNFLRELPSYNGQKEVLIDDLK 385

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               +   I +   ++   EDL + L + +I               E     R G + + 
Sbjct: 386 YYMSKRYTINIFTGSRTSLEDLADALLKEDI----------QFSEAEEPEVERTGVYLI- 434

Query: 637 VGINLLREGLDIPECGLVAI 656
                + +G+++ +  LV +
Sbjct: 435 --ARSIEKGIEVQDLKLVYL 452



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 69/175 (39%), Gaps = 8/175 (4%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          + + I     +G 
Sbjct: 756 VLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRFPVQTFVLEYNERIIKEAILREISRGG 815

Query: 584 RILLTVLTKRMAEDLT---EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           ++       +  +++    + L + +I+V   H ++   E   ++ D   G+++VLV   
Sbjct: 816 QVFYLYNRIKDIQEVAAKLQNLVDDSIKVACAHGQMPEEELERVLLDFIEGRYNVLVCTT 875

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           ++  G+D+P    + + D+D+ G  +    L Q  GR  R+       +     K
Sbjct: 876 IIESGVDMPNVNTLIVEDSDRLGLAQ----LYQLRGRVGRSSRLAYAYFTFRKDK 926


>gi|307707904|ref|ZP_07644379.1| transcription-repair coupling factor [Streptococcus mitis NCTC
           12261]
 gi|307615969|gb|EFN95167.1| transcription-repair coupling factor [Streptococcus mitis NCTC
           12261]
          Length = 1167

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 86/522 (16%), Positives = 185/522 (35%), Gaps = 58/522 (11%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S KT  +A  +    +  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKTLAIASSLRQEDK-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I   ++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDS--------PMVEFLMSSQEKIISLVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q  L+  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKITVGEEYDQHALIHQLKEIGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +  +R+  FG++++ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PYRIEFFGDEVDGIRSFEVETQLSKENQTELIIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    Q   +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQMHLDSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               E   T+F+YI +D+ +F D+    + Q     R          + G    S M   
Sbjct: 281 CY--EKSWTVFDYIEKDTPIFFDDYQKLMNQYEAFERELAQYFTEDLQNGKSF-SEMQYF 337

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
               + +    P T   +   G   L+        Q             ++    Q   +
Sbjct: 338 ADTEQNYKKQSPVTFFSNLQKGLGNLKFDHIYQFNQYP-----------MQEFFNQFSFL 386

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +EI    +    I+L       ++ L + L E  I+   + S  K+    E +  +   
Sbjct: 387 KEEIERYKKMDYTIILQSSNSMGSKTLEDVLEEYQIK---LDSRDKSSICKESVNLIE-- 441

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
                     LR G    +  ++ I + +       +    Q
Sbjct: 442 --------GNLRHGFHFVDEKILVITEHEIFQKKLKRRFRRQ 475



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 17/205 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           D +    ++G ++          +     L E + E +I   Y+H ++  ++    + D 
Sbjct: 812 DSVLREMERGGQVYYLYNKVDTIDQKVSKLQELIPEASI--GYVHGQMSEIQLENTLLDF 869

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I 
Sbjct: 870 IEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------IA 922

Query: 689 YADTITKSIQLAIDETTRRREKQLE 713
           YA  + +  + +I E + +R + ++
Sbjct: 923 YAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|331265444|ref|YP_004325074.1| transcription-repair coupling factor [Streptococcus oralis Uo5]
 gi|326682116|emb|CBY99732.1| transcription-repair coupling factor [Streptococcus oralis Uo5]
          Length = 1167

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 81/506 (16%), Positives = 180/506 (35%), Gaps = 54/506 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K QL+LG++ S K   +A  +E   +  +++      A ++ S+  +      V  F+ 
Sbjct: 24  KKRQLILGLSTSTKALVIASSLEKENK-IVLLTSTYGEAERIISDLLSILGEEFVYPFLV 82

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
                      P  +  +  +  I  +++ +R     S   +   +V +  +    + S 
Sbjct: 83  DDS--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCNIAASRLILPSP 131

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             + +  +++ +G+  +Q ELL  L +  Y++      +G F + GD ++IF     +  
Sbjct: 132 TRFKESTIKIAVGEEYDQHELLHRLKEIGYRKVTQVQTQGEFSIRGDILDIFEMSQLE-P 190

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
           +R+  FG++++ I  F   T     N   + I+  S  +            +++++   L
Sbjct: 191 FRIEFFGDEVDGIRTFEVETQLSKENQTELTIFPASDILLREKDYQRGQSALEKQISKTL 250

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
             + K              +Y  E+L +    Q   +  ++L+     +   T+F+YI +
Sbjct: 251 SPILK--------------SYLEEILSSFHQKQVHSDSRKFLSLCY--DKTWTIFDYIEK 294

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           ++ +F D+    + Q     R          + G    S M       + +    P T  
Sbjct: 295 NTPVFFDDYQKLMNQYEAFERELAQYFTEDLQNGKSF-SDMQYFADTEQNYKKQSPVTFF 353

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
            +   G   L+        Q             ++    Q   + +EI    +    I+L
Sbjct: 354 SNLQKGLGNLKFDYIYQFNQYP-----------MQEFFNQFSFLKEEIERYKKMNYTIIL 402

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
                  ++ L + L E  I+   + S  K+    E +  +             LR G  
Sbjct: 403 QSSNSMGSKTLEDVLEEYQIK---LDSRGKSSICKESVNLVE----------GNLRHGFH 449

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQ 673
             +  ++ I + +       +    Q
Sbjct: 450 FVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 90/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   ++H ++  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIDRKVSE-LQELIPEASI--GFVHGQMSEIQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|148242564|ref|YP_001227721.1| transcription-repair coupling factor [Synechococcus sp. RCC307]
 gi|147850874|emb|CAK28368.1| Transcription-repair coupling factor [Synechococcus sp. RCC307]
          Length = 1183

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 81/492 (16%), Positives = 164/492 (33%), Gaps = 59/492 (11%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G +   +    + +      P +V+ P    A +  +  +         Y  S    Y
Sbjct: 31  LQGASRGARALLASAMARCEGAPLLVVVPTLEEAGRWAALLELMGWPTTQLYPTSEGSPY 90

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYS 291
             EA+ P ++    +   ++E +D           +    ++V++   +   +      +
Sbjct: 91  --EAFDPTSEITWGQLQVLSELVDEQ--------GDGWQGVIVATERALQPHLPPPAVLA 140

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L+ G S++ +EL ++L +  Y+R       G++   GD +++FP   E +  R+ 
Sbjct: 141 DQCLTLRKGASIDLEELAANLARLGYERVSTIEQEGSWSRRGDIVDLFPVSAE-LPVRLE 199

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            FG D+E++ EF P T + +  V+ ++I    +              ++  L  +L +L 
Sbjct: 200 FFGEDLEKLREFDPATQRSLDAVDLVRITPTGYGPLVAD-------ALRANLPDQLDQLL 252

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                            + E +E   +  + E   R +      + P +L +Y+PE +LL
Sbjct: 253 -----------------NAEAMEQLLAGDTPEGMRRLMGL--AWQQPSSLLDYLPEHTLL 293

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +DE    +      +           + G   P+         E         +     
Sbjct: 294 VLDERRQAMAHGQQWFDHAEQHHGDEVD-GLLPPTLHRPISDTIEALEAFAGFDLA---- 348

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
               EL +         +    +   P        Q   +   I    ++  R+ L    
Sbjct: 349 ----ELAETDQHPNSFDLNSRAVPAYP-------NQFGKLAGLIKDFQREKTRVWLLSAQ 397

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
              A  L   L E +   R++ +         +I               L  EGL +P  
Sbjct: 398 PSRAVAL---LEEHDCITRFVPNPGDQPAIERLIEQNTPVALKTKGTAEL--EGLQLPAW 452

Query: 652 GLVAILDADKEG 663
            L  I D +  G
Sbjct: 453 RLALITDREFFG 464



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 70/195 (35%), Gaps = 17/195 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E V   I    
Sbjct: 763 VLTLSATPIPRTLYMSLSGVREMSLITT----PPPLRRPIKTHLASLDEEAVRSAIRQEL 818

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      E++   L +    +R +  H ++   E    +     G+ DV++
Sbjct: 819 DRGGQVFYVVPRVEGIEEVAGGLRQMLPGLRLLVAHGQMPEGELESAMVAFNAGEADVML 878

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I D+ K G L     L   +GR+    ++ +    D      
Sbjct: 879 CTTIVESGLDIPRVNTILIEDSQKFG-LSQLYQLRGRVGRSGIQAHAWLFYPGDASLSDA 937

Query: 698 QLAIDETTRRREKQL 712
                   R R  Q 
Sbjct: 938 AR-----QRLRAIQE 947



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAMQ--RPAIVMAP 201
            Y P+ DQ  AI ++ + +   +   +L+ G  G GKT   +  + +A+   R   ++AP
Sbjct: 610 PYEPTPDQLKAITEVKRDMEQGKPMDRLVCGDVGFGKTEVALRAIFKAVTAGRQTALLAP 669

Query: 202 NKILAAQLYSEFKNFFPH 219
             +LA Q +      F  
Sbjct: 670 TTVLAQQHWRTLSERFAP 687


>gi|146282996|ref|YP_001173149.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri
           A1501]
 gi|145571201|gb|ABP80307.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri
           A1501]
          Length = 1148

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 121/323 (37%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+     +R  +++  +   A +L  E   F P   V +F          
Sbjct: 21  LPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAFFAPELPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R +    L E  +  +VV   + ++ +          
Sbjct: 71  ---PDWETLPYDLFSPHQDIVSQRIATLYQLPELSHGVLVVPITTALHRLAPKRFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +   ++ +++   L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVEQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSA-LPYRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P   + I  VE+I++     +   +     A+   +   + R        
Sbjct: 187 DEIETLRTFDPENQRSIDKVESIRLLPAREFPLKKE----AVTGFRARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R     + L T  +   IE Y          E   TLF+Y+PEDS +F  
Sbjct: 237 -------VDFRRCPIYQDLSTGITPAGIEYYLPLFY-----EETATLFDYLPEDSQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAEQFWNDVRNRYEE 304



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V           + + +     +G 
Sbjct: 750 ILTLTATPIPRTLNMSIAGMRDLSIIATPPARRLSVRTFVMEANNPTIKEALLRELLRGG 809

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +  E    DL   + E  I +   H +++  +  +++ D    +F+VLV  
Sbjct: 810 QVYYLHNDVKTIEKCAADLQALVPEARIAIG--HGQMRERDLEQVMSDFYHKRFNVLVAS 867

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 868 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPRKAMT- 922

Query: 700 AIDETTRRRE 709
             D+  +R E
Sbjct: 923 --DDAQKRLE 930



 Score = 37.4 bits (85), Expect = 9.4,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 146 DYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            +  + DQ AAI  + +  + ++   +L+ G  G GKT      A +     +   V+ P
Sbjct: 597 PFEETPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAVLVP 656

Query: 202 NKILAAQLYSEFKNFFPHNAV 222
             +LA Q Y+ F++ F    V
Sbjct: 657 TTLLAQQHYNSFRDRFADWPV 677


>gi|85711280|ref|ZP_01042339.1| Transcription-repair coupling factor, superfamily II helicase
           [Idiomarina baltica OS145]
 gi|85694781|gb|EAQ32720.1| Transcription-repair coupling factor, superfamily II helicase
           [Idiomarina baltica OS145]
          Length = 1159

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 155/449 (34%), Gaps = 46/449 (10%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
            S +K      + GS     +AKVI+      +V+  +   A +L  E         V Y
Sbjct: 13  DSPQKDISWTDLNGSSPALALAKVIDRTPGRVLVVTADANQAHRLEQE---------VRY 63

Query: 225 FVSYYDYYQPEAYV-PRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIY 282
           F   +  Y  +  V P  +T      S ++ I   R S    L + R   ++VS  + + 
Sbjct: 64  FAGEHTDYHDDITVFPDWETLPYDTFSPHQDIISERLSVLARLPQARRGALIVSLNTLLQ 123

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            I  VE      + L +   ++   L   L +  Y+  +  +  G F   G  +++FP  
Sbjct: 124 RIAPVEFVQSQSLNLTVNQQLDALALREQLERNGYRAVEQVMEHGEFSSRGSILDLFPM- 182

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
                +R+  F N+I+ I  F P T + +  VE++K+     +    P     +++ +  
Sbjct: 183 GSTTPYRIDFFDNEIDSIRPFDPETQRSLTPVESVKLLPAHEF----PLTKAGIEHFRSA 238

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            + R           E + L Q+++          +   IE Y          E   TLF
Sbjct: 239 FRERFE------ISHERESLYQQVSK-------GQTPGGIEYYLPLFF-----EQTATLF 280

Query: 463 EYIPEDS-LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN-RPLRFEEWNC 520
           +Y+P D+ L+   +   T+ ++   +    HR      Y  + P    N   +  E+ + 
Sbjct: 281 DYLPNDALLVTFGDIQGTLEKL---WIDINHRYEQR-RYDQQKPLLHPNEIFMLAEQVHS 336

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
                  + A                 +   T  V         +     +   I+ A  
Sbjct: 337 RFKQMRRIRAAI------PSGKPTPGAVSFNTAPVTDIAAEHQNKQPFAKLKQLISTAID 390

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           QG R+L    +    E L + L       
Sbjct: 391 QGQRLLFVTESAGRKEALHDILGRIGYPA 419



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L      I +  I    P   +     +R        + + I     +
Sbjct: 764 ILTLTATPIPRTLNMAMNNIRDLSIIATPPARRLAVKTFVREHDN--ATIREAILRETLR 821

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E     +        V   H +++  E   I+ D    +F+VLV  
Sbjct: 822 GGQVYFLHNNVDTIEKTAREIEALVPEASVTVAHGQMRERELERIMSDFYHQRFNVLVCT 881

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +  
Sbjct: 882 TIIETGIDVPSANTIIIDRADHLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKRMTK 937


>gi|149003146|ref|ZP_01828055.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP14-BS69]
 gi|237651085|ref|ZP_04525337.1| transcription-repair coupling factor [Streptococcus pneumoniae CCRI
           1974]
 gi|237821198|ref|ZP_04597043.1| transcription-repair coupling factor [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147758887|gb|EDK65883.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP14-BS69]
          Length = 1169

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 85/529 (16%), Positives = 189/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V + V+    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIVASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERDLAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTNICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|168487226|ref|ZP_02711734.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC1087-00]
 gi|183569911|gb|EDT90439.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC1087-00]
          Length = 953

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 188/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERDLAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTSICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 85/205 (41%), Gaps = 17/205 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVE---IRSARTQVE 569
           E    L+     + ++ATP    L     GI    +I        PV+   +    + + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 570 DVYDEINLAAQQGLRILLTVLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           D          QG  +   V T  +   +L E + E +I   Y+H  +  ++    + D 
Sbjct: 812 DAVLREMERGGQGYYLYNKVDTIVQKVSELQELIPEASI--GYVHGRMSEVQLENTLLDF 869

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I 
Sbjct: 870 IEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------IA 922

Query: 689 YADTITKSIQLAIDETTRRREKQLE 713
           YA  + +  + +I E + +R + ++
Sbjct: 923 YAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|221230954|ref|YP_002510106.1| transcription-repair coupling factor [Streptococcus pneumoniae ATCC
           700669]
 gi|225853617|ref|YP_002735129.1| transcription-repair coupling factor [Streptococcus pneumoniae JJA]
 gi|220673414|emb|CAR67872.1| putative putative transcription-repair coupling factor
           [Streptococcus pneumoniae ATCC 700669]
 gi|225722629|gb|ACO18482.1| transcription-repair coupling factor [Streptococcus pneumoniae JJA]
          Length = 1169

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 85/529 (16%), Positives = 189/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V + V+    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIVASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERDLAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTNICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|332198663|gb|EGJ12746.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA41317]
          Length = 1169

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 188/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTSICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|119715169|ref|YP_922134.1| transcription-repair coupling factor [Nocardioides sp. JS614]
 gi|119535830|gb|ABL80447.1| transcription-repair coupling factor [Nocardioides sp. JS614]
          Length = 1224

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 97/564 (17%), Positives = 183/564 (32%), Gaps = 86/564 (15%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
             +A  +          L L    + + F +A ++    R  + +      A  L     
Sbjct: 25  PVLADAMADARGGVVPALDLTGPEALRPFVVAGLV-RAGRSVLAVTATSREAEDLVEALG 83

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS------ATRSLLE 268
           +      V Y+ S+ +    E   PR+DT   + +     + R+ H       AT S   
Sbjct: 84  DLLDPARVAYYPSW-ETLPHERLSPRSDTVGRRLAV----LRRLCHPGAATDAATDSSAG 138

Query: 269 RNDCI---VVSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
             +     VV+ V  +      G+G +E       +L+ GD+    +++  L    Y R 
Sbjct: 139 TPNGPIDVVVAPVRSVLQPQVKGLGDLEPV-----ELEPGDTAPLDDVVRRLAAAAYTRV 193

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RG F V G  +++FP   E+   RV ++G+D+EEI  F     + +   + +   
Sbjct: 194 DLVEKRGEFAVRGGIVDVFPP-TEEHPLRVELWGDDVEEIRSFSVADQRTLGKADRLWAP 252

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
                +        A    +E    +L+EL  +                   +    + +
Sbjct: 253 PCRELLLTDEVRARAAALGREH--PQLLELTDK-------------------IAAGIAVE 291

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATL 497
            +E+ +  L           L + +P D+ + V +          +              
Sbjct: 292 GMESLAPVLVDEMEL-----LVDLMPADTHVLVLDPERARSRAHDLVATSEEFLAASWAA 346

Query: 498 AEYGFRLP--------------SCMDNRPLRFEE---WNCLRPTTIVVSATPGSWELEQC 540
           A  G   P              +  D R    ++   W  + P  I   A P   E    
Sbjct: 347 AAGGGTAPIDTLMMGMGAASYRTIADVREHCLDQHKPWWTVSPFGIETDAGPAPAE---S 403

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
              ++   +R   +    V+  + R ++E    +I      G R+++       A+ + E
Sbjct: 404 DPAVIAGAVRSRAVPATSVD--AYRGEMERAIKDIETWRSAGHRVVVLHAGHGPAQRMVE 461

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
            L E ++  R +       E         LG   V V    +  G       LV +   D
Sbjct: 462 VLGEHDVPARAVDGIAAAAE---------LGDSVVTVTCGAIDHGFVDETNRLVLLTGED 512

Query: 661 KEGFLRSKTSLIQTIGRAARNVNS 684
             G   S   + +   R  R ++ 
Sbjct: 513 LSGQRASTRDMRKMPARRKRQIDP 536



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 68/202 (33%), Gaps = 19/202 (9%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL- 583
             + +SATP    LE     I E     + +  PP E     T V    D   +AA +   
Sbjct: 817  VLSMSATPIPRTLEMAITGIREM----STITTPPEERHPVLTYVGAYEDRQIVAAVRREL 872

Query: 584  ----RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
                ++          E     + E     R    H ++   +  +++ D    +FDVLV
Sbjct: 873  LREGQVFYIHNRVSSIEKAAARIKELVPEARVATAHGQMGEHQLEQVMLDFWEKRFDVLV 932

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  GLD+     + I  AD  G  +    L Q  GR  R+       +     K  
Sbjct: 933  CTTIVESGLDVSNANTMIIERADTLGLSQ----LHQLRGRVGRSRERAYAYFLYPPEKP- 987

Query: 698  QLAIDETTRRREKQLEHNKKHN 719
               + ET   R   L  +    
Sbjct: 988  ---LTETAHERLATLAQHSDLG 1006


>gi|15902050|ref|NP_357600.1| transcription-repair coupling factor [Streptococcus pneumoniae R6]
 gi|116516151|ref|YP_815427.1| transcription-repair coupling factor [Streptococcus pneumoniae D39]
 gi|15457534|gb|AAK98810.1| Transcription-repair coupling factor [Streptococcus pneumoniae R6]
 gi|116076727|gb|ABJ54447.1| transcription-repair coupling factor [Streptococcus pneumoniae D39]
          Length = 1169

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 90/572 (15%), Positives = 201/572 (35%), Gaps = 80/572 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTSICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN- 683
           +  +             LR G    +  ++ I + +       +    Q +  A R  + 
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQHVSNAERLKDY 486

Query: 684 ------SKVILYADTITKSIQ-LAIDETTRRR 708
                   V+ +   I + +    I+     R
Sbjct: 487 NELEKGDYVVHHIHGIGQYLGIETIEIKEIHR 518



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 85/205 (41%), Gaps = 17/205 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVE---IRSARTQVE 569
           E    L+     + ++ATP    L     GI    +I        PV+   +    + + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 570 DVYDEINLAAQQGLRILLTVLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           D          QG  +   V T  +   +L E + E +I   Y+H  +  ++    + D 
Sbjct: 812 DAVLREMERGGQGYYLYNKVDTIVQKVSELQELIPEASI--GYVHGRMSEVQLENTLLDF 869

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I 
Sbjct: 870 IEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------IA 922

Query: 689 YADTITKSIQLAIDETTRRREKQLE 713
           YA  + +  + +I E + +R + ++
Sbjct: 923 YAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|168576116|ref|ZP_02722021.1| transcription-repair coupling factor [Streptococcus pneumoniae
           MLV-016]
 gi|307066642|ref|YP_003875608.1| transcription-repair coupling factor [Streptococcus pneumoniae
           AP200]
 gi|183578032|gb|EDT98560.1| transcription-repair coupling factor [Streptococcus pneumoniae
           MLV-016]
 gi|306408179|gb|ADM83606.1| Transcription-repair coupling factor (superfamily II helicase)
           [Streptococcus pneumoniae AP200]
          Length = 1169

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 90/572 (15%), Positives = 201/572 (35%), Gaps = 80/572 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTSICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN- 683
           +  +             LR G    +  ++ I + +       +    Q +  A R  + 
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQHVSNAERLKDY 486

Query: 684 ------SKVILYADTITKSIQ-LAIDETTRRR 708
                   V+ +   I + +    I+     R
Sbjct: 487 NELEKGDYVVHHIHGIGQYLGIETIEIKEIHR 518



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|169833013|ref|YP_001693440.1| transcription-repair coupling factor [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168995515|gb|ACA36127.1| transcription-repair coupling factor [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 1169

 Score =  159 bits (403), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 90/572 (15%), Positives = 201/572 (35%), Gaps = 80/572 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTSICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN- 683
           +  +             LR G    +  ++ I + +       +    Q +  A R  + 
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQHVSNAERLKDY 486

Query: 684 ------SKVILYADTITKSIQ-LAIDETTRRR 708
                   V+ +   I + +    I+     R
Sbjct: 487 NELEKGDYVVHHIHGIGQYLGIETIEIKEIHR 518



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 85/205 (41%), Gaps = 17/205 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVE---IRSARTQVE 569
           E    L+     + ++ATP    L     GI    +I        PV+   +    + + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 570 DVYDEINLAAQQGLRILLTVLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           D          QG  +   V T  +   +L E + E +I   Y+H  +  ++    + D 
Sbjct: 812 DAVLREMERGGQGYYLYNKVDTIVQKVSELQELIPEASI--GYVHGRMSEVQLENTLLDF 869

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I 
Sbjct: 870 IEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------IA 922

Query: 689 YADTITKSIQLAIDETTRRREKQLE 713
           YA  + +  + +I E + +R + ++
Sbjct: 923 YAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|295108814|emb|CBL22767.1| Transcription-repair coupling factor (superfamily II helicase)
           [Ruminococcus obeum A2-162]
          Length = 693

 Score =  159 bits (403), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 122/298 (40%), Gaps = 29/298 (9%)

Query: 153 QP----AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           QP    A I ++ K       +  + G   S K   M  +        +V+A ++  A  
Sbjct: 6   QPLQGLAEIEEIEKQAKKNHGILEVSGCIESQKAHLMYGLSGLFPSH-LVIAADEKTAKD 64

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           LY +++  F    V Y+             P  D    +       + R R    R+LLE
Sbjct: 65  LYEDYR--FYDKRVYYY-------------PAKDLLFFQADIHGNLLIRQRMQVIRALLE 109

Query: 269 RND--CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
           R +   +V S   C+  +  +E   + ++  +   S++  +L ++LV   Y+R     + 
Sbjct: 110 RQEEITVVTSIDGCMDYLLPLEKIEKQLIHFRNDSSLDMDKLTAALVHMGYERVGQVEMP 169

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           G F + G  I+I+ S  E+  WR+ ++G++I+ I  F   + + + N++ I IY  +   
Sbjct: 170 GQFSIRGGIIDIY-SLTEENPWRIELWGDEIDSIRSFDAQSQRSLENLDEIMIYPAAEQP 228

Query: 387 TPRPTLNTAMKYIKE----ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             +    T + Y K+         L  LE+  + +E +  +Q      E  ETT S  
Sbjct: 229 IEKG-GVTFIDYFKDGDSMLFLDELNHLEENAKAVEEE-FQQSCRNRQEKGETTLSGN 284


>gi|168493994|ref|ZP_02718137.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575852|gb|EDT96380.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC3059-06]
          Length = 1169

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 188/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERDLAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTSICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|168491776|ref|ZP_02715919.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC0288-04]
 gi|183573939|gb|EDT94467.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC0288-04]
          Length = 1169

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 90/572 (15%), Positives = 201/572 (35%), Gaps = 80/572 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTSICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN- 683
           +  +             LR G    +  ++ I + +       +    Q +  A R  + 
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQHVSNAERLKDY 486

Query: 684 ------SKVILYADTITKSIQ-LAIDETTRRR 708
                   V+ +   I + +    I+     R
Sbjct: 487 NELEKGDYVVHHIHGIGQYLGIETIEIKEIHR 518



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 85/205 (41%), Gaps = 17/205 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVE---IRSARTQVE 569
           E    L+     + ++ATP    L     GI    +I        PV+   +    + + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 570 DVYDEINLAAQQGLRILLTVLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           D          QG  +   V T  +   +L E + E +I   Y+H  +  ++    + D 
Sbjct: 812 DAVLREMERGGQGYYLYNKVDTIVQKVSELQELIPEASI--GYVHGRMSEVQLENTLLDF 869

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I 
Sbjct: 870 IEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------IA 922

Query: 689 YADTITKSIQLAIDETTRRREKQLE 713
           YA  + +  + +I E + +R + ++
Sbjct: 923 YAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|168484302|ref|ZP_02709254.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042444|gb|EDT50490.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CDC1873-00]
 gi|332198870|gb|EGJ12952.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA47368]
          Length = 1169

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 188/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERDLAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTSICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLYMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|148988910|ref|ZP_01820325.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP6-BS73]
 gi|147925721|gb|EDK76797.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP6-BS73]
          Length = 1169

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 188/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERDLAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYS-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTSICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|315612154|ref|ZP_07887069.1| transcription-repair coupling factor [Streptococcus sanguinis ATCC
           49296]
 gi|315315715|gb|EFU63752.1| transcription-repair coupling factor [Streptococcus sanguinis ATCC
           49296]
          Length = 1167

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/522 (15%), Positives = 188/522 (36%), Gaps = 58/522 (11%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   +  +++      A ++ S
Sbjct: 12  DQ---IKKWHQNLIDKKR-QLILGLSTSTKALAIASSLEKENK-IVLLTSTYGEAERIIS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLLSLLGEELVYPFLVDDS--------PMVEFLMSSQEKIISRVEALRFL---SDPSKKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S   + +  +++ +G+  +Q ELL  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPTRFKESTIKIAVGEEYDQHELLHRLKEIGYRKVTQVQTQGEFSI 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +  +R+  FG++++ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEMSQLE-PFRIEFFGDEVDGIRTFEVETQLSKENQTNLTIFPASDILLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  ++L +    Q   +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEDILSSFHQKQVHSDSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               +   T+F+YI +D+ +F D+    + Q     R          + G    S M   
Sbjct: 281 CY--DKAWTVFDYIEKDTPVFFDDYQKLMNQYEAFERELAQYFTEDLQNGKSF-SEMQYF 337

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
               + +    P T   +   G   L+        Q             ++    Q   +
Sbjct: 338 ADTEQTYKKQSPVTFFSNLQKGLGNLKFDHIYQFNQYP-----------MQEFFNQFSFL 386

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +EI    +    I+L       ++ L + L E  I+   + S+ K+    E +  +   
Sbjct: 387 KEEIERYKKMDYTIVLQSSNSMGSKTLEDVLEEYQIK---LDSKDKSSICKESVNLIE-- 441

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
                     LR G    +  ++ I + +       +    Q
Sbjct: 442 --------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 85/205 (41%), Gaps = 17/205 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           D +    ++G +I          +    +L E + E +I   Y+H ++  ++    + D 
Sbjct: 812 DAVLREMERGGQIYYLYNKVDTIDQKVSELQELIPEASI--GYVHGQMSEIQLENTLLDF 869

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I 
Sbjct: 870 IEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------IA 922

Query: 689 YADTITKSIQLAIDETTRRREKQLE 713
           YA  + +  + +I E + +R + ++
Sbjct: 923 YAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|78212830|ref|YP_381609.1| transcription-repair coupling factor [Synechococcus sp. CC9605]
 gi|78197289|gb|ABB35054.1| transcription-repair coupling factor [Synechococcus sp. CC9605]
          Length = 1192

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 90/522 (17%), Positives = 180/522 (34%), Gaps = 70/522 (13%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A+   L     R +  L+ G     +    + + +    P +V+ P    A +  + 
Sbjct: 11  QETALTGELDERSIRAQRLLMRGAGRCSRALVASALAQRRGAPLLVVVPTLEEAGRWTAL 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            +      A  Y  S    Y+P  + P +            +I   +      LL   D 
Sbjct: 71  LELMGWSQAGLYPTSEGSPYEP--FDPTS------------EITWGQLQVLSDLLGDPDA 116

Query: 273 I---VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           +   +V++  C+   +   +        L+ GD V+ + L  +L +  Y+R +     G+
Sbjct: 117 LSWAIVATERCLQPHLPPPDVLKTKTRTLRKGDQVDLEALGETLAQLGYERVNTIEQEGS 176

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           +   GD ++IFP   E +  R+  FG +++++ EF P + + +  V+ +++         
Sbjct: 177 WSRRGDIVDIFPVSSE-LPVRLEFFGEELDKLREFDPASQRSLDPVDALRLTPTGFGPL- 234

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
                     I ++L+  + +  +     E            E L   G+ + +    R 
Sbjct: 235 ----------IADQLRETMPDGLEPLLGAEG----------TEQLLNGGTPEGM----RR 270

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG-DFHRKATLAEYG------ 501
           L G   G+ P +L +Y+P+ + + +DE    +          + H     AE G      
Sbjct: 271 LMGLAWGQ-PASLLDYLPDTTTVVIDERRQGLAHGQQWLSHVEEHHHDMAAEAGLDEGDR 329

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
            RL   + +R +               + T      +  + + V+Q      L   PV  
Sbjct: 330 DRLWPAVLHREIEAA-----------YALTEVFHGFDMAELLEVDQHPNSFDLASRPVAA 378

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
                Q   + + I     +   + L       A  L   L E +   R++ +   +   
Sbjct: 379 YP--NQFGKLGELIKGFQTERTAVWLVSAQPSRAVAL---LEEHDCISRFVPNAGDSNAI 433

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             +I         V     L  EGL +P   +  + D +  G
Sbjct: 434 SRLIEQNTPVALKVRGTAEL--EGLQLPAWRIALVTDREFFG 473



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 76/196 (38%), Gaps = 19/196 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E +   I    
Sbjct: 772 VLTLSATPIPRTLYMSLSGVREMSLITT----PPPLRRPIKTHLASLDPEAMRSAIRQEL 827

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      E++   L E    +++   H ++   E    +     G+ DV++
Sbjct: 828 DRGGQVFYVVPRVEGIEEVAAGLREMLPGLKLLVAHGQMAEGELENAMVAFNAGEADVML 887

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA + G  +    L   +GR+    ++ +           
Sbjct: 888 CTTIVESGLDIPRVNTILIEDAHRFGLAQ-LYQLRGRVGRSGIQAHAWLFY-------PG 939

Query: 698 QLAIDETTRRREKQLE 713
             ++ +T R+R + ++
Sbjct: 940 NASLSDTARQRLRAIQ 955


>gi|260664822|ref|ZP_05865673.1| transcription-repair coupling factor [Lactobacillus jensenii
           SJ-7A-US]
 gi|260561305|gb|EEX27278.1| transcription-repair coupling factor [Lactobacillus jensenii
           SJ-7A-US]
          Length = 1161

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/464 (17%), Positives = 167/464 (35%), Gaps = 54/464 (11%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            I++  N+  A +L        P   V+YF                 T   + ++ +   
Sbjct: 50  LIIIEENENKAQRLVDNLAPILPEEKVQYFAVDS-------------TLATQRATASPDE 96

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
              R  A   LL  +  IVV++   + Y +   +SY +    +K+G   + KEL   LV 
Sbjct: 97  LAQRIKALHLLLSGDSGIVVTTAQGLEYQLNPKDSYIRGNKLIKVGQEYDLKELNKWLVA 156

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y+++ +    G F V GD ++I+P   +    R+  FG++++ I  F   T + I   
Sbjct: 157 SGYRKEALVAKPGEFAVRGDILDIYPLD-QVSPIRIEFFGDEVDTIKSFDVNTQKSILEK 215

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           E I +      +     L  A   IK+E+K               Q         LE+L+
Sbjct: 216 EEIVVLPACDRIFETDNLKKAYNLIKDEIKE------SPNSESAEQN-------FLEVLD 262

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
                   +NY+  +    P     +L  Y+PE+ L+  ++        S +   +    
Sbjct: 263 ELAQGNLPDNYAFLVDYLLP--KSCSLLSYLPENGLVVFNDWQAIKKADSEITDQNADFI 320

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           +   + G  L S      L        +   + +S           +G+   +       
Sbjct: 321 SDEIKAGLMLNSQKLRMNLT-TVLRQSKHHRLYLSL--------FQKGMGQLRFDSLFNW 371

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
            +   E   +  Q+  +  E+N   +QG  ++L    +R ++ +   L + ++ +  +  
Sbjct: 372 PNREPEQFFS--QMPLIKSELNKYKKQGYTVILQADNERRSKQIQSNLIDFDLNLPIVTK 429

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           E     +++             + +    +G  +P+  LV + +
Sbjct: 430 ENLVEHKLQ-------------ITVGQFSQGFSLPQIQLVYLTE 460



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++    +   P++          + +       +  
Sbjct: 763 VLTLTATPIPRTLHMSMVGVRDLSVMETPPVNRYPIQTYVMEQLPSVIREACLREMARDG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          ++  E+L++     +   +H  +   +  +I+      +FD+LV   +
Sbjct: 823 QIFYLHNRIGDIDETVEHLHQLVPEAKIEAIHGRMSENQMADILYRFLHKQFDILVTTTI 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 883 IETGIDMPNVNTLIIEDADHYG-LSQLYQLRGRIGRSAR 920


>gi|238855038|ref|ZP_04645366.1| transcription-repair coupling factor [Lactobacillus jensenii 269-3]
 gi|282934824|ref|ZP_06340058.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1]
 gi|238832282|gb|EEQ24591.1| transcription-repair coupling factor [Lactobacillus jensenii 269-3]
 gi|281301096|gb|EFA93406.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1]
          Length = 1161

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/464 (17%), Positives = 167/464 (35%), Gaps = 54/464 (11%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            I++  N+  A +L        P   V+YF                 T   + ++ +   
Sbjct: 50  LIIIEENENKAQRLVDNLAPILPEEKVQYFAVDS-------------TLATQRATASPDE 96

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
              R  A   LL  +  IVV++   + Y +   +SY +    +K+G   + KEL   LV 
Sbjct: 97  LAQRIKALHLLLSGDSGIVVTTAQGLEYQLNPKDSYIRGNKLIKVGQEYDLKELNKWLVA 156

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y+++ +    G F V GD ++I+P   +    R+  FG++++ I  F   T + I   
Sbjct: 157 SGYRKEALVAKPGEFAVRGDILDIYPLD-QVSPIRIEFFGDEVDTIKSFDVNTQKSILEK 215

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           E I +      +     L  A   IK+E+K               Q         LE+L+
Sbjct: 216 EEIVVLPACDRIFETDNLKKAYNLIKDEIKE------SPNSESAEQN-------FLEVLD 262

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
                   +NY+  +    P     +L  Y+PE+ L+  ++        S +   +    
Sbjct: 263 ELAQGNLPDNYAFLVDYLLP--KSCSLLSYLPENGLVVFNDWQAIKKADSEITDQNADFI 320

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
           +   + G  L S      L        +   + +S           +G+   +       
Sbjct: 321 SDEIKAGLMLNSQKLRMNLT-TVLRQSKHHRLYLSL--------FQKGMGQLRFDSLFNW 371

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
            +   E   +  Q+  +  E+N   +QG  ++L    +R ++ +   L + ++ +  +  
Sbjct: 372 PNREPEQFFS--QMPLIKSELNKYKKQGYTVILQADNERRSKQIQSNLIDFDLNLPIVTK 429

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
           E     +++             + +    +G  +P+  LV + +
Sbjct: 430 ENLVEHKLQ-------------ITVGQFSQGFSLPQIQLVYLTE 460



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++    +   P++          + +       +  
Sbjct: 763 VLTLTATPIPRTLHMSMVGVRDLSVMETPPVNRYPIQTYVMEQLPSVIREACLREMARDG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          ++  E+L++     +   +H  +   +  +I+      +FD+LV   +
Sbjct: 823 QIFYLHNRIGDIDETVEHLHQLVPEAKIEAIHGRMSENQMADILYRFLHKQFDILVTTTI 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 883 IETGIDMPNVNTLIIEDADHYG-LSQLYQLRGRIGRSAR 920


>gi|148657760|ref|YP_001277965.1| transcription-repair coupling factor [Roseiflexus sp. RS-1]
 gi|148569870|gb|ABQ92015.1| transcription-repair coupling factor [Roseiflexus sp. RS-1]
          Length = 1265

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 86/551 (15%), Positives = 180/551 (32%), Gaps = 97/551 (17%)

Query: 157 IAQLLKGIHSREKVQLLLGVT-GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           +  L+  +H+    +L +  T G+ +T  +A        P + +      A + + + + 
Sbjct: 19  VQDLIATLHAHRGARLHIAPTPGAARTPLVAAFTLQGVAPLLYLVGTTDAALRAHEDLRQ 78

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN----- 270
           +   + V  F             P +D    +  S    I   R      L   N     
Sbjct: 79  WIGTDRVFLF-------------PASDALPYEHMSTGADILTARLRVLHRLAAFNAGDVD 125

Query: 271 ---DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
                IV    + +    + +      V+L+ G +    +L+  L+   Y+        G
Sbjct: 126 VAPFVIVAPVKALMQPSLTPDELRDASVRLERGMAYALDDLIERLIAMGYRYAPTVEEPG 185

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
                G  I++F S  +D+  R+  FG++I+ +  F PLT +    +    I     +  
Sbjct: 186 EVNRRGGIIDVF-SPGDDLPLRIEFFGDEIDSLRRFDPLTQRSEAQIRAAIIGPPHEFPL 244

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
                + A++ ++            +  +L  + L++      + +      +    ++ 
Sbjct: 245 --WRRDVALERMRA----------IDTSMLRHEALDE-WLQAFDHIRNGERFEGRALFAP 291

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
           +   R+  + P TL  ++P  + + + E+ +     + + +    R+    + G  LP+ 
Sbjct: 292 FF--RDNPQAPGTLLHHLPPGAPVVLSEALLLAQHATELDQQAETRRRQQIDAG-ELPAA 348

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGS---WELEQCQ-------GIIVEQIIRPTGLVDP 557
                LR+ E   L     +V+ +      W++               EQ   P  L D 
Sbjct: 349 FPRPYLRWHELMALAEAHTLVNLSNNEHPFWDVLLSDPAPLPPSFSFGEQNGNPAPLTDT 408

Query: 558 PVEIRSAR--------------------TQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
              +  +                      Q+  + D++    + G R++L        ++
Sbjct: 409 R-NVHPSEDRFRVHLLPERLFAPAELFGGQIRRLVDDVVERLRAGERVVLITPQAARLQE 467

Query: 598 L-TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL----VGINLLREGLDIPECG 652
           L TE L                       RD   G  +V+    V    L EG  +P   
Sbjct: 468 LVTEALQ----------------------RDASDGVENVVSGLTVLHGTLDEGFRMPALN 505

Query: 653 LVAILDADKEG 663
           L    D +  G
Sbjct: 506 LTLYSDTEIFG 516



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 68/197 (34%), Gaps = 19/197 (9%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV-----EDVYDEINLA 578
             + ++ATP    L           IR   ++D P E R   +T V       + + I   
Sbjct: 818  VLTLTATPIPRTLHMALAG-----IRDLSIIDTPPEDRIPIKTYVLPYDERLIREAILRE 872

Query: 579  AQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVL 636
              +G ++       +    + + L       R    H +++  +   ++ D   G+ DVL
Sbjct: 873  LDRGGQVYFVHNRVQSIYYVADRLRRLVPEARIAVGHGQLEEHQLERVMLDFFTGRDDVL 932

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            V   ++  GLD+P    + I DA   G  +    L Q  GR  R+             + 
Sbjct: 933  VCTTIIESGLDVPNANTIIIDDATNFGLAQ----LYQLRGRVGRSTQRAYAYLFYKSERP 988

Query: 697  IQLAIDETTRRREKQLE 713
                  E  R R  Q  
Sbjct: 989  STPEAQE--RLRAIQEA 1003


>gi|306828591|ref|ZP_07461785.1| transcription-repair coupling factor [Streptococcus mitis ATCC
           6249]
 gi|304429199|gb|EFM32285.1| transcription-repair coupling factor [Streptococcus mitis ATCC
           6249]
          Length = 1167

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/522 (15%), Positives = 186/522 (35%), Gaps = 58/522 (11%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  ++   +  +++      A ++ S
Sbjct: 12  DQ---IKKWHQNLIDKKR-QLILGLSTSTKALAIASSLKKENK-IVLLTSTYGEAERIIS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  I     I  +++ +R     S   +  
Sbjct: 67  DLLSILGEEFVYPFLVDDS--------PMVEFLISSHEKIISRVEALRFL---SDPSKKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S   + + I+++ +G+  +Q +LL  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPTGFKESIIRIAVGEEYDQHDLLHKLKEIGYRKVTQVQTQGEFSI 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +  +R+  FG++++ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEMSQLE-PFRIEFFGDEVDGIRTFEVETQLSKENQTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    Q   +  ++L+ 
Sbjct: 235 YLRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQVHSDSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               +   T+F+YI +D+ +F D+    +       R          + G    S M   
Sbjct: 281 CY--DKTWTIFDYIEKDTPVFFDDYQKLMNHYEDFERELAQYFTEDLQNGKSF-SDMQYF 337

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
               + +    P T   +   G   L+        Q             ++    Q   +
Sbjct: 338 ADTEQTYKKQSPVTFFSNLQKGLGNLKFDHIYQFNQFP-----------MQEFFNQFSFL 386

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +EI    +    I+L       ++ L + L E  I+   + S  K+    E +  +   
Sbjct: 387 KEEIERYKKMNYTIILQSSNSMGSKTLEDVLEEYQIK---LDSRDKSSICKESVNLIE-- 441

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
                     LR G    +  ++ I + +       +    Q
Sbjct: 442 --------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 90/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   ++H ++  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIDRKVSE-LQELIPEASI--GFVHGQMSEIQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|15899955|ref|NP_344559.1| transcription-repair coupling factor [Streptococcus pneumoniae
           TIGR4]
 gi|111658624|ref|ZP_01409274.1| hypothetical protein SpneT_02000214 [Streptococcus pneumoniae
           TIGR4]
 gi|14971470|gb|AAK74199.1| transcription-repair coupling factor [Streptococcus pneumoniae
           TIGR4]
          Length = 1169

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 188/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERDLAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTNICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|225857815|ref|YP_002739325.1| transcription-repair coupling factor [Streptococcus pneumoniae
           70585]
 gi|225720446|gb|ACO16300.1| transcription-repair coupling factor [Streptococcus pneumoniae
           70585]
          Length = 1169

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 188/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTNICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|121595462|ref|YP_987358.1| transcription-repair coupling factor [Acidovorax sp. JS42]
 gi|120607542|gb|ABM43282.1| transcription-repair coupling factor [Acidovorax sp. JS42]
          Length = 1164

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 97/540 (17%), Positives = 185/540 (34%), Gaps = 96/540 (17%)

Query: 178 GSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           GS     +A++ E      R   ++  +   A +L  E   F P      F  + +    
Sbjct: 19  GSADALLLARLGEREKAAGRTTAIVTADATDAQRLIDEMAFFAPELRCALFPDW-ETLPY 77

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           +++ P  D   E+ +++  +I + R   T +     D ++V + + +Y +      +   
Sbjct: 78  DSFSPHQDLISERLATL-WRI-QQRDKDTGA-----DVVLVPATTALYRLAPPSFLAGYT 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
              K+   +++ +L + L    Y+     +  G + V G  I++FP     V +RV +F 
Sbjct: 131 FHFKVKQKLDEAKLRAQLTLAGYQHVSQVVGHGEYAVRGGLIDLFPMGSA-VPYRVDLFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P + + +  V  +++     +              + + + R  EL    
Sbjct: 190 DEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDAA--------RAKFRQRWREL---- 237

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
             LE      RI  D   +    +   IE Y          +   T+F+Y+  ++ + + 
Sbjct: 238 --LEGDPTRSRIYKD---MGNGVATAGIEYYLPLFF-----DETATVFDYLGNEATVVLH 287

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC-MDNRPLRFEEWNCLRPTTIVVSATPG 533
               T  Q       D +R   L +     P+   +   L  E++         +S  PG
Sbjct: 288 GDLETAFQRFWQDTRDRYR---LIQGDPDHPTLPPEALFLGAEQFYAQANQHAQLSLRPG 344

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
             ++                L D  V +R A   +  +   I   AQ   R+LL   +  
Sbjct: 345 VEDVADNAQF--------QKLPDLSV-VRGAEDPLARLQAHIRATAQ---RVLLLAESDG 392

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L ++L    +      S    L   +   + R+G     +    L  G    E GL
Sbjct: 393 RRESLLDFLRTSGLNPPAFDS----LAEFQSTPEERVG-----IATAALASGFAWMEEGL 443

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
                                                D +T++   A   TTRRR+KQ +
Sbjct: 444 -------------------------------------DLVTETELFAAGSTTRRRKKQEQ 466



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 10/109 (9%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L E L E  I V   H ++   E   ++RD    ++++L+   ++  G+D+P    + I 
Sbjct: 839 LEEILPEARIAVA--HGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPTANTIIIS 896

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILY----ADTITKSIQLAID 702
            ADK G  +    L Q  GR  R+ +           D +TK  Q  +D
Sbjct: 897 RADKFGLAQ----LHQLRGRVGRSHHQAYAYLMVPDIDGLTKQAQQRLD 941


>gi|225016418|ref|ZP_03705610.1| hypothetical protein CLOSTMETH_00321 [Clostridium methylpentosum
           DSM 5476]
 gi|224950803|gb|EEG32012.1| hypothetical protein CLOSTMETH_00321 [Clostridium methylpentosum
           DSM 5476]
          Length = 1152

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 84/522 (16%), Positives = 181/522 (34%), Gaps = 59/522 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             QL K + +     +++G++   K   + ++ E+   P +V+  ++  A +L  ++   
Sbjct: 14  FRQLEKTVAADGLPAMVIGLSSVHKAHFLYRLSESSDLPLLVLTDDEANAKKLSDDYNQM 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                              A  P  D       +++ + + +R +    ++ R   +V +
Sbjct: 74  AGGEL-------------SAVYPAKDFTFRPIETVSREYEYIRLNVLSRIVNRQVKVVFA 120

Query: 277 SV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            + + +          +    ++ G  +   EL+  L    Y R+        + V G  
Sbjct: 121 GICAAVQYTLPPSRLLEATHTIRAGQELPVGELVGMLAGAGYTRRAQVDGSAQYSVRGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++ FP+   +   RV  +G++I+ IS F   + ++   VE I+I   +  +   P     
Sbjct: 181 VDFFPTSGSE-PVRVEFWGDEIDTISFFELDSQRRTTPVEEIEISPATEIIFSSP----- 234

Query: 396 MKYIKEELKMRLIEL-EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
                E+L+  +  L    G   +A   + +++ D++ ++      +I+ Y      R  
Sbjct: 235 -----EQLREGINGLIRSLGSSPQADAAKLKLSNDIKRIDGGLDLSNIDKYIPLAYDR-- 287

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
              P TLF+Y  E  LLFV E                     L E G  L   +D+    
Sbjct: 288 ---PATLFDYF-ESPLLFVSEWSDLKESARAYEFQYQEDLKILLEEG-ELCKGLDSFVKP 342

Query: 515 FEEWNCLRPT---TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           F   +            +    + +L   + I V  +              S    ++ +
Sbjct: 343 FASVSEQIAQGKTVFFDTFAHANHDLRLKELITVNAMQTS-----------SWSGDLKLL 391

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +++     Q   +++   T++ A+ L   L +  I    +              +L  G
Sbjct: 392 CEDLADLRAQSYSVIIMTGTQKAADVLAHDLEKEGIPSATV----------VPTGELTPG 441

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
              VL    +L  G + P   +  I  A  +   + K    +
Sbjct: 442 VVYVL--AGMLSSGFEYPAAKVALITHARIQNLSKRKVKRRK 481



 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 15/188 (7%)

Query: 516 EEWNCLRP--TTIVVSATPGSWELEQC-----QGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           E +  +      + +SATP    L           ++EQ  +    +   V        +
Sbjct: 755 ERFKEMFRGVDVLTLSATPIPRTLNMAMSGIRDMSVIEQAPQDRHPIQTYVIEHDY-GVI 813

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAE-DLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            D          Q   I   V + +     +++ + +  I +   H ++   E   I + 
Sbjct: 814 ADAIKRELRRDGQVYYIHNRVESIQSCAAQISKLVPDARIGIA--HGKMGENELSRIWQQ 871

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           L   + D+LV   ++  G+D+  C  + I DAD  G  +    L Q  GR  R+      
Sbjct: 872 LMEHEIDILVCTTIIETGVDVSNCNTLIIEDADNMGLSQ----LYQLRGRVGRSKRRASA 927

Query: 688 LYADTITK 695
            +     K
Sbjct: 928 YFTFRRGK 935


>gi|148993579|ref|ZP_01823050.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP9-BS68]
 gi|168489341|ref|ZP_02713540.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP195]
 gi|147927800|gb|EDK78822.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572243|gb|EDT92771.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP195]
 gi|332071709|gb|EGI82202.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA17570]
          Length = 1174

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 188/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTSICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|229819510|ref|YP_002881036.1| transcription-repair coupling factor [Beutenbergia cavernae DSM
           12333]
 gi|229565423|gb|ACQ79274.1| transcription-repair coupling factor [Beutenbergia cavernae DSM
           12333]
          Length = 1205

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 94/540 (17%), Positives = 189/540 (35%), Gaps = 94/540 (17%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI-EAMQRPAIVMAPNKILAAQLYSEF 213
           AA+A+L++ + +R  +  +   +   +   +A+++     RP +V+      A +L +  
Sbjct: 14  AAVARLVEELPARGSLDAI--ASAGVRPALLAQLLGADHPRPLVVVTATGREADELAAAL 71

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           + + P + V    ++ +    E   PR+DT   + +     + R+ H AT +  + +   
Sbjct: 72  RCYVPDDDVAVLPAW-ETLPHERLSPRSDTVARRLAV----LRRLAHPATGADAQPHTGP 126

Query: 274 V---VSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           +   V  V  +      G+G +E        +++G++V+ ++L + L    Y R D+   
Sbjct: 127 IRALVLPVRAMLQPVVTGLGDLEPV-----SVQVGETVDLEDLAARLTAAAYTRTDMVER 181

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI-KIYANSH 384
           RG F V G  +++FP   ED   R+  +G+++EEI  F     + +              
Sbjct: 182 RGDFAVRGGILDVFPP-TEDHPLRLDFWGDEVEEIRWFAVADQRSLEIAPGGLWAPPCRE 240

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
            +        A+     EL+ +L                      LE +    + + +E+
Sbjct: 241 LLLTPEVRARAL-----ELRAQLPGAVDM----------------LEKMSEGIAVEGMES 279

Query: 445 YSR-YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH----------- 492
            +   + G         + E +P+D+LL + +      +   +                 
Sbjct: 280 LAPALVDGMEQ------VLELVPDDALLVLADPERVRRRAHDLVATTEEFLAAAWTSAAA 333

Query: 493 ---RKATLAEYGFR-LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
                  L+   F  +    D    R   W  L P T    A    +  E   G     +
Sbjct: 334 GGATPLDLSAASFATIADARDVALRRGLGWWTLTPFT--ADAELADFMEEDADGGGSTTV 391

Query: 549 IR-PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL----TKRMAEDLTEYLY 603
           +  PT       ++     ++     ++      G R++LT       +RM E L     
Sbjct: 392 VTIPTR------DVEGYHGEISRAVADLQGLTHDGWRLVLTTEGAGPARRMVEQLLA--- 442

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                            R+E   +       V V   ++ +G   PE  L    +AD  G
Sbjct: 443 ------------ADVPARLEPDVEDEPETGVVHVTTAVIGKGFVAPELRLALFSEADLTG 490



 Score = 44.7 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 64/202 (31%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     T    PP E     T V     + +   I    
Sbjct: 797 VLAMSATPIPRTLEMAVTGIREMSTLAT----PPEERHPVLTFVGAYEEKQIAAAIRREL 852

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     L E     R    H ++   +   +I D    +FDVLV
Sbjct: 853 LREGQVFYVHNRVESIERAAARLQELVPEARIAVAHGKMNEHQLERVIVDFWEKRFDVLV 912

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R        +     K  
Sbjct: 913 CTTIIETGLDISNANTLILERADVLGLSQ----LHQLRGRVGRGRERAYSYFLYPPEKP- 967

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N    
Sbjct: 968 ---LTETAHDRLATIAANTDLG 986


>gi|282882197|ref|ZP_06290836.1| transcription-repair coupling factor [Peptoniphilus lacrimalis
           315-B]
 gi|281297962|gb|EFA90419.1| transcription-repair coupling factor [Peptoniphilus lacrimalis
           315-B]
          Length = 1157

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/509 (15%), Positives = 191/509 (37%), Gaps = 51/509 (10%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             ++   +   +    + G T          +   + +  +++A N++ A + Y +  N 
Sbjct: 14  FEEISDALKDSKSPIAVYGTTEGFCGIFSYALFRKLNKKLLIIAENRLSARKYYEDLFNI 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P   + Y              P  D ++    S +    + R      +L  +  I+V+
Sbjct: 74  SPLRVLLY--------------PEKDIFLYDRDSKSRDNLKTRLGTISKILTDDWDIIVT 119

Query: 277 SVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           ++  +   I + + + +  + L+    ++ K L + L++  Y+R       G F + G+ 
Sbjct: 120 TLRALGDKISARDVFLKNTLTLEKSKDIDIKSLNAKLLQMGYERYPQVEGMGQFSIRGNI 179

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I  +   D  +R+ +F  +I+ I  F   + + I  ++++KI+     +        A
Sbjct: 180 IDI--ATFSDN-YRIELFDTEIDSIRTFELESQRSIDFIDSVKIFPTLDILISEDDRLNA 236

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
            K I+ E+    +            RL ++ +     L      Q+ +    +L      
Sbjct: 237 AKKIENEINKTKL------SGERKDRLFEKFSLYKNRLVEDEYIQNPDLIIPFLNE---- 286

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           +    + ++I ED++  ++E    + +   +   +      +  +G  LPS  +      
Sbjct: 287 DKLSGIIDFIGEDTISILNEPKQILEREETLELENSETITEMITFGEALPSHKNIYYPYL 346

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDE 574
              + LR   +          L     +   +  RP  +V+  ++ I + R++++   ++
Sbjct: 347 NIIDKLRKRNL----------LTLNALLTSPKEFRPKAIVNFKMKSITNYRSKIKLFRED 396

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++     G +++L   + + A+ L  +L E N+ V +        +R     +      +
Sbjct: 397 LDYYLSNGYKVILLGGSLKRAKRLHNFLLEFNLNVEF------KEDRNTEFAN------N 444

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEG 663
            +V    +  G +     +V I  A+  G
Sbjct: 445 FVVTTGSVNAGCEFALSKIVIINYAEIYG 473


>gi|322375221|ref|ZP_08049735.1| transcription-repair coupling factor [Streptococcus sp. C300]
 gi|321280721|gb|EFX57760.1| transcription-repair coupling factor [Streptococcus sp. C300]
          Length = 1167

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 84/522 (16%), Positives = 187/522 (35%), Gaps = 58/522 (11%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   +  +++      A ++ S
Sbjct: 12  DQ---IKKWHQNLIDKKR-QLILGLSTSTKALAIASSLEKENK-IVLLTSTYGEAERIIS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLLSLLGEELVYPFLVDDS--------PMVEFLMSSQEKIISRVEALRFL---SDPSKRG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S   + +  +++ +G+  +Q ELL  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPTRFKESTIKIAVGEEYDQHELLHRLKEIGYRKVTQVQTQGEFSI 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +  +R+  FG++++ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEMSQLE-PFRIEFFGDEVDGIRTFEVETQLSKENQTNLTIFPASDILLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    Q   +  ++L+ 
Sbjct: 235 YQRGQLALEKQISKTLSPILK--------------SYLEEILSSFHQKQVHSDSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               +   T+F+YI +D+ +F D+    + Q     R          + G    S M   
Sbjct: 281 CY--DKTWTVFDYIEKDTPVFFDDYQKLMNQYESFERELAQYFTEDLQNGKSF-SGMQYF 337

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
               + +    P T   +   G   L+        Q             ++    Q   +
Sbjct: 338 ADTEQTYKKQSPVTFFSNLQKGLGNLKFDYIYQFNQYP-----------MQEFFNQFSFL 386

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +EI    +    I+L       ++ L + L E  I+   + S  K+    E +  +   
Sbjct: 387 KEEIERYKKMNYTIILQSSNSMGSKTLEDVLEEYQIK---LDSRDKSSICKESVNLIE-- 441

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
                     LR G    +  ++ I + +       +    Q
Sbjct: 442 --------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 90/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G +I      +  + ++++E L E + E +I   ++H ++  ++    + D
Sbjct: 812 DAVLREMERGGQIYYLYNKVDTIDRKVSE-LQELIPEASI--GFVHGQMSEIQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|260893903|ref|YP_003240000.1| transcription-repair coupling factor [Ammonifex degensii KC4]
 gi|260866044|gb|ACX53150.1| transcription-repair coupling factor [Ammonifex degensii KC4]
          Length = 1123

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 89/512 (17%), Positives = 166/512 (32%), Gaps = 86/512 (16%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            ++ ++   + +  K Q + G++G+  +F +A          +V+ P++  A  L +E K
Sbjct: 12  PSVQKIKTALQAG-KPQAVYGLSGTALSFLLAATFREWP-AGMVIVPDEETALTLAAELK 69

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
             +      +         P              S  +  + R R  +  +L  R   +V
Sbjct: 70  LLWGEEVFVFLPREIFGLGP--------------SLPSAFVPRQRLLSLAALARRQGVVV 115

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
            ++ + + G+   E++S    +L  G+ +  +EL   LV+  Y R     + G F   G 
Sbjct: 116 ATAPALLQGLAPPENFSPHCWELWKGEELSPEELGQRLVETGYVRVSAVEVPGQFARRGG 175

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++ FP     +  RV   G++I  I+ F P + +    +E +K+        P      
Sbjct: 176 IVDFFPP-SSPLPVRVEFDGDEIARIATFDPASQRSQTRLEAVKVEPAVEVPNPCTGRE- 233

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
               I  E          +G                       S    E     L  R  
Sbjct: 234 ----ILPE-----SWFLSQGED---------------------SFPYPEVLLPCLFPRV- 262

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
                +L  Y+P  + L + E+                    +     +LP       L 
Sbjct: 263 ----VSLLAYLPPGAPLALVEAQAAEKAAREAEERQMEICREMIAK-KKLPEESRKAFLS 317

Query: 515 FEEWNC---LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           + E      L P  + +S  P     E+   ++   +              S   +   +
Sbjct: 318 WSEVAKELSLYPHRLRLSFLP-----EKNGEVLGLAVRTAP----------SFLGKFAQL 362

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +EI     +  R++L V  +   + + E L E  I           + R+       +G
Sbjct: 363 AEEIQEFM-RHYRVILLVDKEERVKGVVEGLKEYGI-----------IPRLTPDSA-PVG 409

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEG 663
              V V    LREG   PE   V +  A+  G
Sbjct: 410 TVTV-VKGGNLREGFIFPEAQFVLLTPAEIFG 440



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 63/179 (35%), Gaps = 4/179 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      + +     T   D  PVE          + + I     +G 
Sbjct: 734 VLTLTATPIPRTLYMSLVGLRDTSCLTTPPPDRLPVETYVVEEDPAIIREAIRRELARGG 793

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++           ++  ++       R  Y H ++       I+ D    K+DVLV   +
Sbjct: 794 QVYFVYNRVAGIVEVANWVKHLVPEARVAYAHGQMPEAALERIMLDFIDHKYDVLVATTI 853

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           +  GLDI     + + DAD+ G L     L   +GR  R   +  +   D I      A
Sbjct: 854 VENGLDIGNVNTLIVKDADQLG-LSQLYQLRGRVGRTNRLAYAYFLYRRDKIINEAAKA 911



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 51/135 (37%), Gaps = 14/135 (10%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+ R   +Q  T   + L RL          G  ++P   W           F+    Y 
Sbjct: 534 KRVRARVKQAATDVARELLRLYAMRET--AKGHAFSPDTPWQRE--------FEAAFPYE 583

Query: 149 PSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKI 204
            + DQ  AIA +   +   R   +L+ G  G GKT   +    +A+   +   V+ P  I
Sbjct: 584 ETPDQLRAIADVKADMEKPRPMDRLICGDVGFGKTEIALRAAFKAVMDGKQVAVLVPTTI 643

Query: 205 LAAQLYSEFKNFFPH 219
           LA Q Y  F + F  
Sbjct: 644 LAQQHYRTFSSRFAP 658


>gi|194397105|ref|YP_002036727.1| transcription-repair coupling factor [Streptococcus pneumoniae G54]
 gi|194356772|gb|ACF55220.1| transcription-repair coupling factor [Streptococcus pneumoniae G54]
          Length = 1169

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 188/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEMSQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKIELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTSICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|149013378|ref|ZP_01834087.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP19-BS75]
 gi|182682976|ref|YP_001834723.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CGSP14]
 gi|303254907|ref|ZP_07340992.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS455]
 gi|303259732|ref|ZP_07345708.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP-BS293]
 gi|303262199|ref|ZP_07348144.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265395|ref|ZP_07351302.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS397]
 gi|303266057|ref|ZP_07351951.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS457]
 gi|303268465|ref|ZP_07354259.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS458]
 gi|147762901|gb|EDK69849.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP19-BS75]
 gi|182628310|gb|ACB89258.1| transcription-repair coupling factor [Streptococcus pneumoniae
           CGSP14]
 gi|301800979|emb|CBW33640.1| putative putative transcription-repair coupling factor
           [Streptococcus pneumoniae INV200]
 gi|302598178|gb|EFL65239.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS455]
 gi|302636839|gb|EFL67329.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639284|gb|EFL69743.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP-BS293]
 gi|302641966|gb|EFL72319.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS458]
 gi|302644361|gb|EFL74614.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS457]
 gi|302645072|gb|EFL75312.1| transcription-repair coupling factor [Streptococcus pneumoniae
           BS397]
          Length = 1169

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 188/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQSLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEMSQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKIELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTSICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|327481347|gb|AEA84657.1| transcription-repair coupling protein Mfd [Pseudomonas stutzeri DSM
           4166]
          Length = 1145

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 122/323 (37%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+     +R  +++  +   A +L  E   F P   V +F          
Sbjct: 18  LPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAFFAPELPVLHF---------- 67

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R +    L E  +  +VV   + ++ +          
Sbjct: 68  ---PDWETLPYDLFSPHQDIVSQRIATLYQLPELSHGVLVVPITTALHRLAPKRFLLGSS 124

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ +++   L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 125 LVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSA-LPYRIDLFD 183

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P   + I  VE+I++     +   +     A+   +   + R        
Sbjct: 184 DEIETLRTFDPENQRSIDMVESIRLLPAREFPLKKE----AVTGFRARFRERFD------ 233

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R     + L T  +   IE Y          E   TLF+Y+PEDS +F  
Sbjct: 234 -------VDFRRCPIYQDLSTGITPAGIEYYLPLFY-----EETATLFDYLPEDSQVF-- 279

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 280 -SLPGIEQAAEQFWNDVRNRYEE 301



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V           + + +     +G 
Sbjct: 747 ILTLTATPIPRTLNMSIAGMRDLSIIATPPARRLSVRTFVMEANNPTIKEALLRELLRGG 806

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +  E    DL   + E  I +   H +++  +  +++ D    +F+VLV  
Sbjct: 807 QVYYLHNDVKTIEKCAADLQTLVPEARIAIG--HGQMRERDLEQVMSDFYHKRFNVLVAS 864

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 865 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPRKAMT- 919

Query: 700 AIDETTRRRE 709
             D+  +R E
Sbjct: 920 --DDAQKRLE 927



 Score = 37.4 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 146 DYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            +  + DQ AAI  + +  + ++   +L+ G  G GKT      A +     +   V+ P
Sbjct: 594 PFEETPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAVLVP 653

Query: 202 NKILAAQLYSEFKNFFPHNAV 222
             +LA Q Y+ F++ F    V
Sbjct: 654 TTLLAQQHYNSFRDRFADWPV 674


>gi|301793331|emb|CBW35690.1| putative putative transcription-repair coupling factor
           [Streptococcus pneumoniae INV104]
          Length = 1169

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 85/529 (16%), Positives = 187/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+   Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYAQHAFIHQLKENGYQKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             I+  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------IQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTSICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|156185986|gb|ABU55311.1| excinuclease ABC subunit B [Callosobruchus chinensis]
          Length = 122

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/122 (65%), Positives = 99/122 (81%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             L+ G++S ++ Q+LLGVTGSGKTFTMA VI    RPA++MA NK LAAQLY E K  F
Sbjct: 1   DSLIAGLNSNKRDQILLGVTGSGKTFTMANVIARTNRPALIMAHNKTLAAQLYEEMKGLF 60

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
           P+NAV YF+SYYDYYQ EAY+P+TDTYIEK+S+IN++ID +R+SA  SLLER D IVV+S
Sbjct: 61  PNNAVGYFISYYDYYQSEAYLPQTDTYIEKDSAINDRIDMLRYSAVCSLLERRDTIVVAS 120

Query: 278 VS 279
           VS
Sbjct: 121 VS 122


>gi|313112804|ref|ZP_07798451.1| transcription-repair coupling factor [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624874|gb|EFQ08182.1| transcription-repair coupling factor [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 1157

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 95/509 (18%), Positives = 170/509 (33%), Gaps = 62/509 (12%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           ++     L G+  +G+    A + + + R   ++ P +  A     + K      AV   
Sbjct: 20  AKPGPAALFGLPPAGRALLYAALQKDLGRVLCIVTPGEAEATHFADDLKALGLAAAV--- 76

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI- 284
                        P  D  +        + +  R S   SL       V      +    
Sbjct: 77  ------------FPPRDFMLRPVEGAGREYEYRRLSVLGSLAGGRLNAVCVPAEALLQYT 124

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
              + + +  + LK G    ++ L++ L    Y R+      G F V GD ++I+   + 
Sbjct: 125 VPRDEFLKNTLTLKPGMVYNREGLVARLFAAGYVRRSQVDGPGQFSVRGDIVDIYAPDMR 184

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
             A RV  + ++I+ IS F  LT ++   +E I +      +    T  TA     E L+
Sbjct: 185 QPA-RVEYWDDEIDSISSFDLLTQRRDSALEKIYLSPAREVLFG-DTAETA-----EALR 237

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
             + +     R      LE+    DL  L++    ++++ Y      R P   P TL ++
Sbjct: 238 AAIKKARGRHRTA----LEKATEADLAQLDSGLMPEAMDKYY---GLRYP--SPATLLDH 288

Query: 465 IPEDSLLFV-DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP 523
           +  D+ LF+ DE                     L E G   P          +     + 
Sbjct: 289 L--DTPLFILDEVGGIRDAQKATEFRRSEELTGLLEEGVLCPGLDVLYQTMDDLAAAAQK 346

Query: 524 TTIVVS--ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++      G  E +    I  E    P       V +R          ++++    Q
Sbjct: 347 QSTLLCENFLRGMNEFKLKDLINAEAFAAP-NWNGDLVSLR----------EDLDPLIAQ 395

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G  + L   T + A  LT  L ++   V              + RD+R  K  V V    
Sbjct: 396 GYAVTLFSGTPKGAAALTRDLADKGYSVS-------------MSRDVRPTKGIVQVLPGH 442

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTS 670
           L  G   P     A+L + + G     ++
Sbjct: 443 LTAGCTFP-FAHAAVLSSRRHGLEEETSA 470



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 7/176 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI     I    +   PVE          + + +     +G 
Sbjct: 763 MLTLSATPIPRTLNMAMSGIRDLSTIEQPPIERQPVETFVLEYNDVILAEAMKKELARGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E    ++ +     R    H ++   E   + + L  G+ D+LV   L
Sbjct: 823 QVYYLHNRVDNIEACAAHVSKLVPGARIGIAHGKMTEEELNPVWQHLLNGEIDILVCTTL 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  G+D+  C  + I DAD+ G  +    L Q  GR  R+       +     K++
Sbjct: 883 IETGIDVRNCNTLIIEDADRMGLAQ----LYQIRGRVGRSGRKAYAYFTFRRDKTL 934


>gi|332199073|gb|EGJ13154.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA47901]
          Length = 1169

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 85/529 (16%), Positives = 187/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+   Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYAQHAFIHQLKENGYQKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             I+  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------IQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTSICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|30271874|gb|AAP29972.1| transcription-repair coupling protein Mfd [Pseudomonas putida]
          Length = 421

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 121/316 (38%), Gaps = 40/316 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   +  R  +++  +   A +L  E + F P   V  F          
Sbjct: 13  LPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPF---------- 62

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI-VVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E +  I VV   + ++ +          
Sbjct: 63  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPVTTALHRLAPTRFLLGSS 119

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G +++ +++   L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 120 LVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPM-GSKLPYRIDLFD 178

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  V+++++     +   +  +       K   + R        
Sbjct: 179 DEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRF----KARFRERFD------ 228

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +      IE Y          E   TLF+Y+P D+ +F  
Sbjct: 229 -------VDFRRSAIFQDLASGIIPPGIEYYLPLFF-----EETSTLFDYLPADTQVF-- 274

Query: 475 ESHVTIPQISGMYRGD 490
            S   + Q +  +  D
Sbjct: 275 -SLPGVEQAAEHFWND 289


>gi|207109632|ref|ZP_03243794.1| excinuclease ABC subunit B [Helicobacter pylori HPKX_438_CA4C1]
          Length = 129

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/129 (51%), Positives = 92/129 (71%), Gaps = 3/129 (2%)

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           +N A+K I++EL +RL   +++ ++LE  RL+QR  +DLEM+  TG C+ IENY+R+ TG
Sbjct: 1   MNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTG 60

Query: 452 RNPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
           + P E P  LF+Y      + L+ VDESHV++PQ  GMY GD  RK+ L EYGFRLPS +
Sbjct: 61  KAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSAL 120

Query: 509 DNRPLRFEE 517
           DNRPL+F+E
Sbjct: 121 DNRPLKFDE 129


>gi|148984550|ref|ZP_01817838.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP3-BS71]
 gi|147923327|gb|EDK74441.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP3-BS71]
 gi|301799155|emb|CBW31667.1| putative putative transcription-repair coupling factor
           [Streptococcus pneumoniae OXC141]
          Length = 1169

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 188/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTKVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERDLAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTSICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|293364521|ref|ZP_06611246.1| transcription-repair coupling factor [Streptococcus oralis ATCC
           35037]
 gi|291317029|gb|EFE57457.1| transcription-repair coupling factor [Streptococcus oralis ATCC
           35037]
          Length = 1167

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 84/522 (16%), Positives = 187/522 (35%), Gaps = 58/522 (11%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   +  +++      A ++ S
Sbjct: 12  DQ---IKKWHQNLIDKKR-QLILGLSTSTKAIAIASSLEKENK-IVLLTSTYGEAERIIS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLLSLLGEELVYPFLVDDS--------PMVEFLMSSQEKIISRVEALRFL---SDPSKKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S   + +  +++ +G+  +Q ELL  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPTRFKESTIKIAVGEEYDQHELLHQLKEIGYRKVTQVRTQGEFSI 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +  +R+  FG++++ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEMSQLE-PFRIEFFGDEVDGIRTFEVETQLSKENQTNLTIFPASDILLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    Q   +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQVHSDSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               +   T+F+YI +D+ +F D+    + Q     R          + G    S M   
Sbjct: 281 CY--DETWTVFDYIEKDTPVFFDDYQKLMNQYESFERELAQYFTEDLQNGKSF-SGMQYF 337

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
               + +    P T   +   G   L+        Q             ++    Q   +
Sbjct: 338 ADTEQTYKKQSPVTFFSNLQKGLGNLKFDHIYQFNQYP-----------MQEFFNQFSFL 386

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +EI    +    I+L       ++ L + L E  I+   + S  K+    E +  +   
Sbjct: 387 KEEIERYKKMNYTIILQSSNSMGSKTLEDVLEEYQIK---LDSRYKSSICKESVNLIE-- 441

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
                     LR G    +  ++ I + +       +    Q
Sbjct: 442 --------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 85/205 (41%), Gaps = 17/205 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           D +    ++G ++          +    +L E + E +I   Y+H ++  ++    + D 
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIDQKVSELQELIPEASI--GYVHGQMSEIQLENTLLDF 869

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I 
Sbjct: 870 IEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------IA 922

Query: 689 YADTITKSIQLAIDETTRRREKQLE 713
           YA  + +  + +I E + +R + ++
Sbjct: 923 YAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|153811642|ref|ZP_01964310.1| hypothetical protein RUMOBE_02034 [Ruminococcus obeum ATCC 29174]
 gi|149832383|gb|EDM87468.1| hypothetical protein RUMOBE_02034 [Ruminococcus obeum ATCC 29174]
          Length = 1108

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 115/278 (41%), Gaps = 26/278 (9%)

Query: 153 QP----AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           QP    A + ++ K       +  + G   S K   M  +        +V+A ++  A +
Sbjct: 6   QPLQNLAEMEEIQKQAKKNRGILEISGCMESQKAHLMYGLSGLFPCH-LVIAADEKSAKE 64

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           LY +++  F    V Y+             P  D    +       + R R    R+LLE
Sbjct: 65  LYEDYR--FYDKRVYYY-------------PAKDLLFFQADIHGNLLIRQRMQVIRALLE 109

Query: 269 RND--CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
           R D   +V S   C+  +  +E   + ++  +   +++  +L ++LV   Y+R     + 
Sbjct: 110 REDEITVVTSIDGCMDYLVPLEKIEKQLIHFRNDSTLDMDKLTAALVHMGYERVGQVEMP 169

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           G F + G  I+I+ S  E+  WR+ ++G++I+ I  F   + + + N++ + IY  +   
Sbjct: 170 GQFSIRGGIIDIY-SLTEENPWRIELWGDEIDSIRSFDAQSQRSLENLDDVTIYPAAE-Q 227

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
                  + + Y KE     L  L++   L E  +  Q
Sbjct: 228 PMEKNGVSFLDYFKE--TETLFFLDELNHLEENAKAVQ 263



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/338 (14%), Positives = 104/338 (30%), Gaps = 60/338 (17%)

Query: 355 NDIEEISEFY-------PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
           ++I  ++          PL       +E   I+  +        L  A+ ++  E   ++
Sbjct: 112 DEITVVTSIDGCMDYLVPL-----EKIEKQLIHFRNDSTLDMDKLTAALVHMGYERVGQV 166

Query: 408 I---ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY-------------LTG 451
               +    G +++   L +                 I++   +             +T 
Sbjct: 167 EMPGQFSIRGGIIDIYSLTE-----ENPWRIELWGDEIDSIRSFDAQSQRSLENLDDVTI 221

Query: 452 RNPGEPP-----PTLFEYIPE-DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505
               E P      +  +Y  E ++L F+DE +        +            E G    
Sbjct: 222 YPAAEQPMEKNGVSFLDYFKETETLFFLDELNHLEENAKAVQEEFQQSCENRKEKGEI-- 279

Query: 506 SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565
           S   +    +EE          V+ +      ++    I  Q       +       S +
Sbjct: 280 SLSGDWMCTWEELCHKINDRNCVAMSLLD--PKKSNWKISGQFNITVKSMS------SYQ 331

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +  E +  ++    ++G +I+L   ++  AE L + L E  +   Y           +  
Sbjct: 332 SSFELLVKDLKQYKKEGYQIVLLSGSRTRAERLAKDLQEEGLNAFYG---------QDSD 382

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           R L+ G+  ++V     R G + P      I + D  G
Sbjct: 383 RILQPGE--IMVAYGHARRGFEYPLVKFAVITETDIFG 418



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 19/191 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +  +    L +PP++    +T V     E V + IN   
Sbjct: 716 VLTLTATPIPRTLHMSMIGIRDMSV----LEEPPMDRVPIQTYVMEYDEETVREAINREL 771

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           ++G ++           D+T  + +   + RV + H ++   E   ++     G  DVLV
Sbjct: 772 RRGGQVYYVYNRVNDIADVTTRIAKLLPDARVDFAHGQMSERELEAVMYAFINGDIDVLV 831

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + I D+D+ G  +    L Q  GR  R+  +            +
Sbjct: 832 STTIIETGLDISNVNTMIIHDSDRYGLSQ----LYQLRGRIGRSNRTAYAFLMYRRNTML 887

Query: 698 QLAIDETTRRR 708
           +    ET  +R
Sbjct: 888 K----ETAEKR 894


>gi|307702811|ref|ZP_07639761.1| transcription-repair coupling factor [Streptococcus oralis ATCC
           35037]
 gi|307623667|gb|EFO02654.1| transcription-repair coupling factor [Streptococcus oralis ATCC
           35037]
          Length = 1166

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 84/522 (16%), Positives = 187/522 (35%), Gaps = 58/522 (11%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   +  +++      A ++ S
Sbjct: 11  DQ---IKKWHQNLIDKKR-QLILGLSTSTKAIAIASSLEKENK-IVLLTSTYGEAERIIS 65

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 66  DLLSLLGEELVYPFLVDDS--------PMVEFLMSSQEKIISRVEALRFL---SDPSKKG 114

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S   + +  +++ +G+  +Q ELL  L +  Y++      +G F +
Sbjct: 115 ILVCNIAASRLILPSPTRFKESTIKIAVGEEYDQHELLHQLKEIGYRKVTQVRTQGEFSI 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +  +R+  FG++++ I  F   T     N   + I+  S  +     
Sbjct: 175 RGDILDIFEMSQLE-PFRIEFFGDEVDGIRTFEVETQLSKENQTNLTIFPASDILLREKD 233

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    Q   +  ++L+ 
Sbjct: 234 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQVHSDSRKFLSL 279

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               +   T+F+YI +D+ +F D+    + Q     R          + G    S M   
Sbjct: 280 CY--DETWTVFDYIEKDTPVFFDDYQKLMNQYESFERELAQYFTEDLQNGKSF-SGMQYF 336

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
               + +    P T   +   G   L+        Q             ++    Q   +
Sbjct: 337 ADTEQTYKKQSPVTFFSNLQKGLGNLKFDHIYQFNQYP-----------MQEFFNQFSFL 385

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +EI    +    I+L       ++ L + L E  I+   + S  K+    E +  +   
Sbjct: 386 KEEIERYKKMNYTIILQSSNSMGSKTLEDVLEEYQIK---LDSRYKSSICKESVNLIE-- 440

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
                     LR G    +  ++ I + +       +    Q
Sbjct: 441 --------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 474



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 85/205 (41%), Gaps = 17/205 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 751 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 810

Query: 573 DEINLAAQQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           D +    ++G ++          +    +L E + E +I   Y+H ++  ++    + D 
Sbjct: 811 DAVLREMERGGQVYYLYNKVDTIDQKVSELQELIPEASI--GYVHGQMSEIQLENTLLDF 868

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I 
Sbjct: 869 IEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------IA 921

Query: 689 YADTITKSIQLAIDETTRRREKQLE 713
           YA  + +  + +I E + +R + ++
Sbjct: 922 YAYLMYRP-EKSISEVSEKRLEAIK 945


>gi|88800098|ref|ZP_01115668.1| transcription-repair coupling protein Mfd [Reinekea sp. MED297]
 gi|88777224|gb|EAR08429.1| transcription-repair coupling protein Mfd [Reinekea sp. MED297]
          Length = 1151

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 78/495 (15%), Positives = 161/495 (32%), Gaps = 59/495 (11%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
            + G++GS     +A+++   Q+  + +  +     +L ++   +      +        
Sbjct: 17  TISGLSGSADALALAEIMTQHQQTVLCIVDSPNQLERLSTDLDAYRGQADWQ-------- 68

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESY 290
                  P  +T      S +E I   R +  ++L +R   IV+++ + + + +  V   
Sbjct: 69  ---VMAFPDWETLPYDNFSPHEDIISERLAVLKALEQRPYAIVLTTAANLSHRLPPVSEI 125

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
                Q ++GD +   +    L K  Y+  D     G F V G  ++++P   E +  R+
Sbjct: 126 QGGAFQWQVGDPLNLDQQREKLNKAGYRATDTVFEHGEFAVRGALLDVYPMGSE-LPVRI 184

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F ++IE I  F P T +       I++          P     +   ++  + R    
Sbjct: 185 ELFDDEIESIRWFDPETQRTSEKTHAIELLPGREV----PLNENGINRFRQNFRERFD-- 238

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS- 469
               +    Q +                   +E Y          +   +LF+Y+PE + 
Sbjct: 239 TDFTKSTVYQEV-----------SDGIPSPGVEYYLPLFY-----DNTASLFDYLPEQTL 282

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
            +  D    TI +        +  +    +     P   D   LR EE+           
Sbjct: 283 TVTFDALSETIDRYWEEVSSRYENRRHDIQNPILKP---DELFLRKEEFFSRLGQ--FQR 337

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL-AAQQGLRILLT 588
                   EQ  G   + +  P               + ++  + +     +   R+L  
Sbjct: 338 IVLSGKNSEQLTGEQPQALTTPQSY--------PVDHRAQEPLNALECFLKETNHRVLFC 389

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
             +    E L E L    I      +    + +     D+ LG     + +  L  GL +
Sbjct: 390 AESAGRREALKELLARIRIT----PTPCADIGQFLNTSDIALG-----LTVAPLSNGLVL 440

Query: 649 PECGLVAILDADKEG 663
               +  I +A   G
Sbjct: 441 DSARITLISEAQLFG 455



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 15/166 (9%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    +     G+    II   P   +     +R     +  + + +     +
Sbjct: 756 ILALTATPIPRTMNMSMSGVRDLSIIATPPAKRLSVKTFVREKDDAL--IKEAVLREILR 813

Query: 582 GLRILLT---VLTKRMAE-DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T    +  LTE + E  + V   H ++   +   I+ D    +F+VL+
Sbjct: 814 GGQVYYLHNEVSTIEKTQAFLTELIPEARVVVA--HGQMPERQLERIMSDFYHKRFNVLL 871

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
              ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +
Sbjct: 872 CTTIIETGIDVPSANTIVIERADKFGLAQ----LHQLRGRVGRSHH 913



 Score = 38.5 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 147 YHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPN 202
           +  + DQ  AI ++L  +   R   +L+ G  G GKT      A +  +  +   V+ P 
Sbjct: 604 FEETDDQAQAIRKVLNDLRQPRPMDRLICGDVGFGKTEVALRAAFIAASSGKQVAVLVPT 663

Query: 203 KILAAQLYSEFKNFFPH 219
            +LA Q +  F++ F  
Sbjct: 664 TLLAQQHFENFQDRFAD 680


>gi|326316443|ref|YP_004234115.1| transcription-repair coupling factor [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323373279|gb|ADX45548.1| transcription-repair coupling factor [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 1163

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 90/540 (16%), Positives = 179/540 (33%), Gaps = 96/540 (17%)

Query: 178 GSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           GS     +A+V E     +R   ++  +   A +L  E   F P      F  + +    
Sbjct: 19  GSADALLLARVAEREKAARRTTAIVTADATDAQRLIDEMAFFAPGLRCALFPDW-ETLPY 77

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           + + P  D   E+ +++  +I +      +      D ++V + + +Y +      +   
Sbjct: 78  DTFSPHQDLISERLATL-WRISQ------KDRDTGADVVLVPATTALYRLAPPSFLAAYT 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
              K+   +++ +  + L    Y      +  G + V G  I++FP     V +RV +F 
Sbjct: 131 FHFKVKQKLDEAKFRAQLTLAGYSHVSQVVGPGEYAVRGGLIDLFPM-GSPVPYRVDLFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P T + +  V  +++     +                    R     +  
Sbjct: 190 DEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDD--------------AARAKFRSRWR 235

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
            LLE    + RI  D   +    +   IE Y          +   T+F+Y+ ED+ + + 
Sbjct: 236 ELLEGDPTKSRIYKD---MGNGVATAGIEYYLPLFF-----DETATVFDYLGEDATVVL- 286

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC-MDNRPLRFEEWNCLRPTTIVVSATPG 533
             H  +      +  D   +  L +     P+   ++  L  E++         ++  PG
Sbjct: 287 --HGDLEPAFQRFWQDTKERFRLVQGDPDRPALPPESLFLGIEQFYTRANAHAQLALRPG 344

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
             ++E                +     +R A   +  ++  I        R+LL   +  
Sbjct: 345 VEDVED---------NPHFQKLGDLSVVRGAEDPLARLHAHIRNT---QHRVLLLAESDG 392

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L ++L    +      S    L   +   D R+G     +    L  G    E G+
Sbjct: 393 RRESLLDFLRASQLNPPAFDS----LAEFQGQADERVG-----IATAALATGFAWIEEGI 443

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
                                                D +T++   A   TTRRR+KQ +
Sbjct: 444 -------------------------------------DFVTETELFAAGTTTRRRKKQEQ 466



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L E L E  I V   H ++   E  +++RD    ++++L+   ++  G+D+P    + + 
Sbjct: 839 LEEILPEARIAVA--HGQMPERELEKVMRDFVAQRYNILLCSTIIETGIDVPTANTIIMS 896

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ADK G  +    L Q  GR  R+ +             +  
Sbjct: 897 RADKFGLAQ----LHQLRGRVGRSHHQAYAYLMVPDVDGLTK 934


>gi|154496044|ref|ZP_02034740.1| hypothetical protein BACCAP_00328 [Bacteroides capillosus ATCC
           29799]
 gi|150274599|gb|EDN01663.1| hypothetical protein BACCAP_00328 [Bacteroides capillosus ATCC
           29799]
          Length = 1169

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 73/506 (14%), Positives = 165/506 (32%), Gaps = 50/506 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             +L   +          G++   +    A + +A+ R  +V+  ++  A ++  +    
Sbjct: 8   FQRLAAAVDGGGCPAAFTGLSPVHRAHMAAGLRQALGRSVVVLCADEAEADRMARDLAFL 67

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI-VV 275
                                +   +      + ++ Q +  R S  R+L      + V 
Sbjct: 68  TGEQV--------------RTLTAREFTFHHAAVVSRQWEHKRLSVLRALAAGECPLLVC 113

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +    +         +Q    L++G+S +  EL  +L    Y R +     G F + G  
Sbjct: 114 TIEGALERTIPKTLLTQASQCLRVGESYDLNELADTLTAAGYTRCEQVEGVGQFALRGGI 173

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP-RPTLNT 394
           ++ + S  ED   RV  FG++ + +  F   T +++ N ++ +I   +  +    P    
Sbjct: 174 LDFY-SPAEDGPIRVEFFGDEADSMGLFDVNTQRRVENRKSAEILPAAEVLPQFAPGGYA 232

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
            +    + L  R    +          L + +  D E L    S  +++ Y   +     
Sbjct: 233 GLLEAMDGLIARAKRRKDGAD------LAKTLEEDRERLAENRSFPALDRYIALVYPHMA 286

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
                   +Y PED+++   ES     +              L E G  L   +      
Sbjct: 287 TAA-----DYFPEDAVVLFSESPRVAERAKNYLWQLTEDAKALMEAG-VLAGELSEFART 340

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYD 573
           FEE   +          P  +              RP  L++   +   +    +E    
Sbjct: 341 FEELCGVLEEW------PVVYLDNFVGAQYPR---RPRTLLNLLCKQLPSYGASLETAVS 391

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +++    +    ++ V +++ A +L   L E+ ++               ++  L     
Sbjct: 392 DLSHYINENFSTVVLVSSEQRALNLQALLREQGVKAAV----------DFLLHKL-PAPG 440

Query: 634 DVLVGINLLREGLDIPECGLVAILDA 659
             ++ +  L  G++ PE     + + 
Sbjct: 441 KAVIAVGGLSGGMEYPEARCAVLTEG 466



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 63/150 (42%), Gaps = 12/150 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-----VYDEINLAA 579
            + +SATP    L      I +     + L +PP + +  +T V +     ++D +    
Sbjct: 768 VLTLSATPIPRTLNMALSGIRDM----STLEEPPSDRQPVQTYVLEHDWGVLFDAMRREL 823

Query: 580 QQGLRILLT---VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           ++G ++      V T          +   ++ V   H ++   E  +++  +  G+ DVL
Sbjct: 824 ERGGQVYYLHNRVETITRTAARIREMLGEDVTVGVAHGKMSQEELNDVMTRMSEGEVDVL 883

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLR 666
           V   ++  G+DI     + I DADK G  +
Sbjct: 884 VCTTIIETGIDISNANTLIIEDADKMGLAQ 913



 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 87/238 (36%), Gaps = 20/238 (8%)

Query: 66  IHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTP 125
           I   E+     +           ++ +  +++ +    + L +L           +   P
Sbjct: 547 IGAGEDAQETKKLSKLGGADW--EKAKTRAKKAVKDLAKGLIQLYAQ--------RQRQP 596

Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT 184
             ++S +  S+ +  F+ Q +Y  + DQ   IA++   + + R   +LL G  G GKT  
Sbjct: 597 GFAFSPD--SEWMREFEEQFEYTETDDQLRCIAEIKGDMEAPRPMDRLLCGDVGYGKTEV 654

Query: 185 MAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
             + I       + A ++ P  +LA Q Y   K  F    VE  V        +      
Sbjct: 655 AFRAIMKCVLDGKQAAILVPTTVLARQHYLSAKQRFAKYPVEIDVVSRFRTPAQM----K 710

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
           +T    E+   + +        + +  ++  ++V      +G+   E   +M  Q+ +
Sbjct: 711 ETLRRVEAGQIDLLIGTHRLFQKDVKFKDLGLLVIDEEQRFGVAHKEKLKEMSRQVDV 768


>gi|149020164|ref|ZP_01835138.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP23-BS72]
 gi|147930842|gb|EDK81823.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP23-BS72]
          Length = 1169

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 188/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLMSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTNICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|332071328|gb|EGI81823.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA17545]
          Length = 1169

 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 188/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLMSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTNICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|307711221|ref|ZP_07647643.1| transcription-repair coupling factor [Streptococcus mitis SK321]
 gi|307617183|gb|EFN96361.1| transcription-repair coupling factor [Streptococcus mitis SK321]
          Length = 1167

 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 81/517 (15%), Positives = 180/517 (34%), Gaps = 55/517 (10%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I +  + +  +++ QL+LG++ S K   +A  +    +  +++      A  L S+  + 
Sbjct: 14  IKKWHRNLTDKKR-QLMLGLSTSTKALAIASSLRQEDK-IVLLTSTYGEAEGLVSDLISV 71

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  F+            P  +  +  +  I  +++ +R     S   +   +V +
Sbjct: 72  LGEELVYPFLVDDS--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKGILVCN 120

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
                  + S   +   IV++ +G+  +Q   +  L +  Y++      +G F + GD +
Sbjct: 121 IAVSRLILPSPNIFKDSIVKITVGEEYDQHTFIHQLKEIGYRKVTQVQTQGEFSIRGDIL 180

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IF     +  +R+  FG++++ I  F   T     N   + I+  S  +          
Sbjct: 181 DIFEMSQLE-PFRIEFFGDEVDGIRTFEVETQLSKENQTELTIFPASDILLREKDYLRGQ 239

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
             +++++   L  + K              +Y  E+L +    Q   +  ++L+     +
Sbjct: 240 SALEKQISKTLSPILK--------------SYLEEILSSFHQKQVHSDSRKFLSLCY--D 283

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              T+F+YI +D+ +F D+    + Q     R          + G    S M       +
Sbjct: 284 KTWTIFDYIEKDTPVFFDDYQKLMNQYEAFERELAQYFTEDLQNGKSF-SDMQYFADTEQ 342

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            +    P T   +   G   L+        Q             ++    Q   + +EI 
Sbjct: 343 TYKKQSPVTFFSNLQKGLGNLKFDHIYQFNQYP-----------MQEFFNQFSFLKEEIE 391

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +    I+L       ++ L + L E  I+   + S  K+    E +  +        
Sbjct: 392 RYKKMDYTIILQSSNSMGSKTLEDVLEEYQIK---LDSRDKSSICKESVNLIE------- 441

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
                LR G    +  ++ I + +       +    Q
Sbjct: 442 ---GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 85/205 (41%), Gaps = 17/205 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDNVIR 811

Query: 573 DEINLAAQQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           D +    ++G ++          +    +L E + E +I   Y+H ++  ++    + D 
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIDQKVSELQELIPEASI--GYVHGQMSEIQLENTLLDF 869

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I 
Sbjct: 870 IEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------IA 922

Query: 689 YADTITKSIQLAIDETTRRREKQLE 713
           YA  + +  + +I E + +R + ++
Sbjct: 923 YAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|149007710|ref|ZP_01831319.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP18-BS74]
 gi|307126180|ref|YP_003878211.1| transcription-repair coupling factor [Streptococcus pneumoniae
           670-6B]
 gi|147760705|gb|EDK67677.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP18-BS74]
 gi|306483242|gb|ADM90111.1| transcription-repair coupling factor [Streptococcus pneumoniae
           670-6B]
          Length = 1169

 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 188/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLMSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTNICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|301059200|ref|ZP_07200138.1| transcription-repair coupling factor [delta proteobacterium NaphS2]
 gi|300446690|gb|EFK10517.1| transcription-repair coupling factor [delta proteobacterium NaphS2]
          Length = 1180

 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 88/526 (16%), Positives = 202/526 (38%), Gaps = 68/526 (12%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQL 209
           SGD+   +++L + +    +   + G++G+ + +  A+ ++ ++ P +V+  +K  A + 
Sbjct: 22  SGDRENPLSRLNRWVDEGYRAIKVAGLSGAARAYGFARFLDRLKTPCLVILADKKRAERF 81

Query: 210 YSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER 269
           + E + F                      P  D       S + Q+   R +A  +L+  
Sbjct: 82  HREIRFFMGLQN-----EDSGAVARLHRFPSYDMSPLTGLSPHTQLVTERINALYALMTE 136

Query: 270 NDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
            D ++++S   + Y +    + S  +  L+ G+++++ +L+ +L    Y+   +   RG 
Sbjct: 137 PDPVIITSPEALCYRVMPKSALSDALEYLEEGEAMDRDDLIKTLEINGYQNTSMVEERGD 196

Query: 329 FRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
           + V G  I++F P +   +  R+  +G+ +E I +F P++ +  +N+  + +      + 
Sbjct: 197 YSVRGGVIDVFSPLY--PLPVRLEFWGDRLESIRQFDPVSQRSEKNLSELILLPACEIIK 254

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
               +  A                         R   R+           +    E +  
Sbjct: 255 GPENITRA-------------------------RSMGRVP---GHHGADSAFPGQEAWLN 286

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
           +       + P TLF ++PE S+L + E     P      +             +R  S 
Sbjct: 287 HFY-----DSPDTLFGFLPEKSVLALMEPGFIEPNRRKTEKKFHQDIEK-----YREESA 336

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGS-----WELEQCQGIIVEQIIRPTGLVDPP--VE 560
               P   +      P T + S          +EL        E+ +   G  +    +E
Sbjct: 337 ARGEPFP-DIDGLFVPFTEIASLAANHQKIEFFELNLGPDERAEKALVFEGRFEIEDDLE 395

Query: 561 IR-SARTQVED--VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           IR + + +V      ++++     G ++++T  T++ A  L E L   +++V        
Sbjct: 396 IRLATKGRVSMAPFANKVSRWLALGAQVVMTCSTRQQANRLGEILGTYDVKV-------- 447

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
               ++  R++ +G+  + + ++ L  G   PE GL  + + +  G
Sbjct: 448 -ERVVQGWREVGMGRG-LTICLDRLSRGFVWPELGLYVVSEDEIFG 491



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 68/193 (35%), Gaps = 10/193 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+    G+    +I         +E   +      +   I    ++G 
Sbjct: 789 VLAITATPVPRTLQMSMMGVRDLSVIETPPRDRLAIETYLSPYDEATIKRAIQNELERGG 848

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +        +      + L +     R+   H ++K  E    +      + DVLV   +
Sbjct: 849 QTFFVHNRVKSIVHTADALRKLVPEARFEVAHGQMKPKELENTMMRFLKREIDVLVCTTI 908

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + I +AD+ G  +      Q  GR  R  + K   Y      ++    
Sbjct: 909 IESGLDIPSANTIIINEADRLGLAQIY----QLRGRVGR-ASEKAYAYLLVTRDAMLTR- 962

Query: 702 DETTRRREKQLEH 714
            +  +R +  ++ 
Sbjct: 963 -DAEKRLKALMDF 974


>gi|227485004|ref|ZP_03915320.1| transcription-repair coupling factor [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237001|gb|EEI87016.1| transcription-repair coupling factor [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 1162

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 80/523 (15%), Positives = 176/523 (33%), Gaps = 60/523 (11%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I ++  G+        +  +T   K      + E +    + +  N   + +   
Sbjct: 12  DQ---IKKIKYGLKD-YSPLYIQALTDGIKAHLALAIFELLGENVVFITDNPKRSEKFLQ 67

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  N     A  Y              P  DT      SI+++    R     SL +   
Sbjct: 68  DI-NQISAKAKLY--------------PDLDTNFYNIKSIDDKKINQRLECLISLSKGEK 112

Query: 272 CIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            I V++ + I   + +++ +++  V +     ++  + ++SL    Y   D    RG F 
Sbjct: 113 FITVTNFAAIKNKLTTLDRFNKSFVIIDEESIIDVDDFINSLSALNYNSTDFVEERGDFA 172

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
             G  I+I+P + ED   R+ +F ++++ I  F   T + I+ ++ ++I   +  +    
Sbjct: 173 KRGSIIDIWPINYED-PVRIELFDDEVDSIRIFDKNTQRTIKKIKNVEIGPANELLYDSD 231

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML----ETTGSCQSIENYS 446
                +K I  ++     E+          + +Q I++  + +    +   +    ENYS
Sbjct: 232 DYKKVIKAISNDIDK--KEVTNTKDQKLVDKYKQIISFLDQKMYVANKDLINAYRTENYS 289

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS 506
            +              +Y+P  ++   D+       ++              E G     
Sbjct: 290 SF-------------IDYLPAGTIFIFDDISRIYESVTKDDEKFLEDLTYQMENGEVF-G 335

Query: 507 CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
              N  L   E         +++ T     L++ +     +II         +E  +   
Sbjct: 336 SFANYLLDSSEIYKNISEKSIINFTSI---LKRTKLFSPRKII-----DLKTIEAENFNK 387

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            +E+        A++  ++ +   +K   E+L +   + +  +             E   
Sbjct: 388 DIENFIRTSIDLAKRDKKVYVFAGSKSRKENLLKSFIDHDFLLAGF---------EENST 438

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           D    K  +++      EG  I +  L      +  G   SK 
Sbjct: 439 DFD--KTPIIISDKNSSEGYYIKDVDLFVFTSKEVFGKTSSKK 479



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVED-----VYDEINLA 578
            + +SATP    L+          IR    +D P E R    T V +     + D I   
Sbjct: 770 VLTLSATPIPRTLQMSLSG-----IRDLSTLDDPPEERLPVNTYVLEFDSGIIRDAILKE 824

Query: 579 AQQGLRILLTVLTKRMAEDL----TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             +  ++          E L     + + E +I +  +H ++   +   I+ D   GK D
Sbjct: 825 INRNGQVYFVYNRVNDIEKLFLKIKDLVPEASIEI--VHGQMSPRQIENIMMDFIDGKID 882

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  G+DI     + I D+D  G  +    L Q  GR  R   S    +     
Sbjct: 883 ILLATTIIETGMDIKNVNTIVIYDSDLMGLSQ----LYQLKGRIGRGYRSSYAYFTYRSG 938

Query: 695 K 695
           K
Sbjct: 939 K 939


>gi|270291823|ref|ZP_06198038.1| transcription-repair coupling factor [Streptococcus sp. M143]
 gi|270279351|gb|EFA25193.1| transcription-repair coupling factor [Streptococcus sp. M143]
          Length = 1167

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 84/522 (16%), Positives = 187/522 (35%), Gaps = 58/522 (11%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +   +E   +  +++      A ++ S
Sbjct: 12  DQ---IKKWHQNLIDKKR-QLILGLSTSTKALAIVSSLEKENK-IVLLTSTYGEAERIIS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLLSLLGEEFVYPFLVDDS--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S   + + I+++ +G+  +Q ELL  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPTGFKESIIRIAVGEEYDQYELLYKLKEIGYRKVTQVQTQGEFSI 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +  +R+  FG++++ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEMSQLE-PFRIEFFGDEVDGIRTFEVETQLSKENQTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    Q   +  ++L+ 
Sbjct: 235 YQQGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQVHSDSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               +   T+F+YI +D+ +F D+    + Q     R          + G    S M   
Sbjct: 281 CY--DKTWTIFDYIEKDTPVFFDDYQKLMNQYEAFERELAQYFTEDLQNGKSF-SDMQYF 337

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
               + +    P T   +   G   L+        Q             ++    Q   +
Sbjct: 338 ADTEQIYKKQSPVTFFSNLQKGLGNLKFDHIYQFNQYP-----------MQEFFNQFSFL 386

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +EI    +    I+L       ++ L + L E  I+   + S  K+    E +  +   
Sbjct: 387 KEEIERYKKMNYTIVLQSSNSMGSKTLEDVLEEYQIK---LDSRDKSSICKESVNLIE-- 441

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
                     LR G    +  ++ I + +       +    Q
Sbjct: 442 --------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 85/205 (41%), Gaps = 17/205 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           D +    ++G ++          +    +L E + E +I   Y+H ++  ++    + D 
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIDQKVSELQELIPEASI--GYVHGQMSEIQLENTLLDF 869

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I 
Sbjct: 870 IEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------IA 922

Query: 689 YADTITKSIQLAIDETTRRREKQLE 713
           YA  + +  + +I E + +R + ++
Sbjct: 923 YAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|225860052|ref|YP_002741561.1| transcription-repair coupling factor [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229483|ref|ZP_06963164.1| transcription-repair coupling factor [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255135|ref|ZP_06978721.1| transcription-repair coupling factor [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298501796|ref|YP_003723736.1| transcription-repair coupling factor [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727732|gb|ACO23583.1| transcription-repair coupling factor [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237391|gb|ADI68522.1| transcription-repair coupling factor [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327388991|gb|EGE87339.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA04375]
          Length = 1169

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 188/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLMSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTNICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|227015821|gb|ACP17918.1| putative transcription-repair coupling factor [Pseudomonas
           nitroreducens]
          Length = 1154

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 123/323 (38%), Gaps = 39/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   +  R  +++  +   A +L  E   F P               P 
Sbjct: 21  LPGAALSLAIAEASTSANRFTLLLTADSQSAERLEQELHFFAPD-------------LPV 67

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
             +P  +T      S ++ I   R +    L E R   +VV   + ++ +   +      
Sbjct: 68  LQLPDWETLPYDVFSPHQDIISQRVATLYQLPELRRGVLVVPITTALHRLAPAKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ +++ S      Y+  D     G F V G  I++FP   E + +R+ +F 
Sbjct: 128 LVLDVGQKLDVEQMRSRFEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-LPYRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE+I++     +   + ++                     G
Sbjct: 187 DEIETLRTFDPETQRSIDKVESIRLLPAREFPLRKESVTGF-----------------RG 229

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           R  E   ++ R     + L +  +   IE Y         GE   TLF+Y+P+D+ +F  
Sbjct: 230 RFRERFDVDYRRCPIYQDLASGLTPAGIEYYIPLF--FEEGET-STLFDYLPQDTQVF-- 284

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I   +  +  D   R   
Sbjct: 285 -SLPGIENAAEQFWTDVRSRYED 306



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 65/178 (36%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V       Q   + + +     +G 
Sbjct: 758 ILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSVRTFVMEEQKSVIKEALLRELLRGG 817

Query: 584 RILLT---VLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T      DL E + E  I +   H ++   E   ++ D    +F+VLV  
Sbjct: 818 QVYFLHNEVKTIEKCARDLAELVPEARIGIG--HGQMNERELERVMSDFYHKRFNVLVAS 875

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K +
Sbjct: 876 TIIETGIDVPSANTILIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPRKQM 929



 Score = 42.0 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTF 183
             + ++  +   D   F     +  + DQ  AI  ++   +  +   +L+ G  G GKT 
Sbjct: 584 ARKGYAFKDPQADYATFSAGFPFEETPDQQTAIEAVVADMLAEKPMDRLVCGDVGFGKTE 643

Query: 184 T---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
                A V     R   V+ P  +LA Q Y+ F++ F    V
Sbjct: 644 VAMRAAFVAVHSGRQVAVLVPTTLLAQQHYNSFRDRFADWPV 685


>gi|332077813|gb|EGI88272.1| transcription-repair coupling factor [Streptococcus pneumoniae
           GA41301]
          Length = 1171

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 188/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLMSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+  +Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTNICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNTNTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|317057762|ref|YP_004106229.1| transcription-repair coupling factor [Ruminococcus albus 7]
 gi|315450031|gb|ADU23595.1| transcription-repair coupling factor [Ruminococcus albus 7]
          Length = 1156

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 72/503 (14%), Positives = 163/503 (32%), Gaps = 60/503 (11%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             +   +        + GV+G  K    A +  +     +++  ++  A ++ S+     
Sbjct: 15  KDIKNCLLKGYTPAAVTGVSGIHKAMLTAAL--SSLGKCLLICADEADATKMVSDMNEMA 72

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
                  +             P  D        I+ + +  R +A   +   N  I+ +S
Sbjct: 73  GEQIACVY-------------PAKDMNFAYMEGISREYEHRRIAALSDIASGNCRIMAAS 119

Query: 278 V-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + +C+ G     +  +    ++ G +++ + L + L+   Y + D       F V G  +
Sbjct: 120 MEACLQGTIPPAALRENTFIIENGSTIDTEALSARLLAAGYTKTDQVEGAAQFAVRGSIV 179

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IFP   +    R+ ++G++++ ++ F   + ++   ++ + +      + P        
Sbjct: 180 DIFPV-QDKQPVRIELWGDEVDTMAYFDVESQRRSEPLDKVTVAPALEIIFPDS------ 232

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
                E   R+ EL K  R     ++ + I  D++++E+      ++ Y           
Sbjct: 233 ----AEQVRRMEELAKSARGKLTDKIREHIQKDIDLIESGIMLTDLDKYYSLAY-----S 283

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              T+F+Y        V E +  I +              L   G            R E
Sbjct: 284 ETATVFDYFG-GGFCAVSEYNNCIEKGKAALAQLAEDLKILYTEGILFK--------RLE 334

Query: 517 EWNCLRPTT---IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
            +N         IV   T       +    +  + +  T               +  + +
Sbjct: 335 GFNLDIGQAESRIVNMKTIFMDTFMRSLNSVKLKKLINTDCRQTSA----WGGSMVALQE 390

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E+      G   ++   +++    + + L +  I    M              +++ GK 
Sbjct: 391 ELQTLCDNGYCTVVLAGSEKTVPIIVKDLNDSGINAEQMSESF----------EIKPGK- 439

Query: 634 DVLVGINLLREGLDIPECGLVAI 656
            V V    L  G D P  G   I
Sbjct: 440 -VYVRTGSLSAGYDYPSIGCALI 461



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI    +I    +   P++          +   I    ++G 
Sbjct: 763 ILTLSATPIPRTLNMALSGIRDMSVIEEPPMDRHPIQTYVIEHNDGVILQAITKELRRGG 822

Query: 584 RILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++           R  + L   + +  I   Y H ++   E  EI R +   + D+LV  
Sbjct: 823 QVYYIHNRIDTILRTVDRLQNSIPDARI--GYAHGQMDEKELSEIWRQVVEHEIDILVCT 880

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            L+  G+D+P    + I DAD+ G  +    L Q  GR  R+       +     K +  
Sbjct: 881 TLIETGIDVPNVNTLIIEDADRLGLSQ----LHQLRGRVGRSNRRAFAYFTFKRGKVLNE 936


>gi|322377900|ref|ZP_08052388.1| transcription-repair coupling factor [Streptococcus sp. M334]
 gi|321281076|gb|EFX58088.1| transcription-repair coupling factor [Streptococcus sp. M334]
          Length = 1169

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 86/522 (16%), Positives = 187/522 (35%), Gaps = 58/522 (11%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K F +A  +E   +  +++      A  L S
Sbjct: 12  DQ---IKKWHQSLTDKKR-QLILGLSTSTKAFAIASSLEKEDK-IMLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDS--------PIVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S   +   IV++ +G+  +Q  L+  L    Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNVFKDSIVKISVGEEYDQHALIHQLKGIGYRKVTQVQTQGEFSM 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +  +R+  FG++++ I  F   T    +N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PYRIEFFGDEVDGIRSFEVETQLSKKNQTELTIFPASDILLKEKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K               Y  E+L +    Q   +  ++L+ 
Sbjct: 235 YQQGQSVLEKQISKTLSPILKL--------------YLEEILSSFHQKQIHSDSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               +   T+F+YI +D+ +F D+    + Q     R          + G  + S M   
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEIFERELAQYFTEELQNGKAV-SEMQYF 337

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
               + +    P T   +   G   L+  +     Q             ++    Q   +
Sbjct: 338 ADTEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEFFNQFSFL 386

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +EI    +    I+L       ++ L + L E  I+   + S  K+    E +  +   
Sbjct: 387 KEEIERYKKMDYTIILQSSNSMGSKTLEDVLEEYQIK---LDSRDKSNICKESVNLIE-- 441

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
                     LR G    +  ++ I + +       +    Q
Sbjct: 442 --------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 85/205 (41%), Gaps = 17/205 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           D +    ++G ++          +    +L E + E +I   Y+H ++  ++    + D 
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIDQKVSELQELIPEASI--GYVHGQMSEIQLENTLLDF 869

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I 
Sbjct: 870 IEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------IA 922

Query: 689 YADTITKSIQLAIDETTRRREKQLE 713
           YA  + +  + +I E + +R + ++
Sbjct: 923 YAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|320352705|ref|YP_004194044.1| transcription-repair coupling factor [Desulfobulbus propionicus DSM
           2032]
 gi|320121207|gb|ADW16753.1| transcription-repair coupling factor [Desulfobulbus propionicus DSM
           2032]
          Length = 1177

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 92/515 (17%), Positives = 168/515 (32%), Gaps = 79/515 (15%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             +L  +        ++G+ G+     +A+ +E +Q     + P       L  +   F 
Sbjct: 2   QSMLARLRDSSSPPDIVGLHGASTALLLARAVETLQHTVCCILPADEQLEPLAQDIAFFS 61

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER--NDCIVV 275
               + Y       Y P +  P T                 R +    L E      ++ 
Sbjct: 62  NVRVLLYPSFEIPPYTPLSPDPAT--------------VCGRLATLYLLREDLSPCIVLT 107

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           S+ + +  +      +     +  G+  +++ L+ SL+   Y++ D+    G   + G  
Sbjct: 108 SAEAVLRRVLPAAVLNAHCELVMTGEETDREALIGSLIAAGYQQCDMVRQEGDLALRGGI 167

Query: 336 IEIFPSHLEDVA---WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           ++++P  L+  A    R+  FG+ +E I  F PL+ +  + +    +   S  + PR   
Sbjct: 168 VDVYPPTLDPAANGPLRLDFFGDTVESIRLFDPLSQRSRQELREAILLPASDLLFPRTDQ 227

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
              +    E +  +      E R+L             E L T      IE     + G 
Sbjct: 228 RAPLLQRLEAVADQYQWASAEVRVL------------RERLATGQRFPGIEFMLPLIYGG 275

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
             G    TLF+Y+P  + L V +      ++  ++           E    LP+      
Sbjct: 276 KDGVQ--TLFDYLPPTASLMVYDPAAVGQRVQLVHDRIAANYREAVERQ--LPA------ 325

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP-----------------TGLV 555
                   L P  + V    G  EL       +   I P                   L+
Sbjct: 326 --------LPPEALFV----GEHELHTATRERLRARILPIPDPDNPSATLTVQTGDHSLL 373

Query: 556 DPPVEI-RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
              +E+ R  R  +  + D I    Q   RI+L   + R AE L E L    ++V  +  
Sbjct: 374 VQEIELQRKKRGLLAPLADRILKWQQDQDRIVLACRSARQAEHLREMLGNYQLKVSLLTP 433

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
                  I+  +        V    + L  G D P
Sbjct: 434 PFAPAALIDDDQ--------VYCYEHPLSRGFDFP 460



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+    GI    +I         V+   AR     + + +    ++G 
Sbjct: 773 VLTLTATPIPRTLQMSLLGIRDLSVISTPPQQRRSVKTFLARYDQLVIREAVLRELERGG 832

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +    + + +  +  + R    H ++   +  +++      + D+LV   +
Sbjct: 833 QLFFVHNRVQSIHRMADTIAAQVPQARIGVAHGQMAGPQLEDVMVRFINHELDILVCTTI 892

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  GLDIP    + I  AD  G L     L   +GRAAR
Sbjct: 893 IESGLDIPNANTIVINRADHLG-LADIYQLRGRVGRAAR 930


>gi|253580889|ref|ZP_04858151.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847731|gb|EES75699.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1107

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 123/306 (40%), Gaps = 25/306 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A   Q+ +   + + +  + G   S K+  M  +        +++A ++  A ++Y +++
Sbjct: 14  AEFEQIKEKSKTNKGILQVSGCMESQKSHLMYGLSGIAPYR-LILAEDERRAREIYEDYR 72

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
             F    V  +             P  D    +       + R R    ++LLE  +  V
Sbjct: 73  --FYDRKVYSY-------------PAKDLLFFQADIHGNLLIRQRMKVIKALLEEKELTV 117

Query: 275 VSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S+  C+  + S+E   + ++  +   +V+ ++L + LV   Y+R     + G F V G
Sbjct: 118 VTSIDGCMDFLESLEKIKEQLIHYESDSTVDIEQLKNQLVALGYERVGQVEMPGQFSVRG 177

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++I+    E+  WR+ ++G++I+ I  F P + + + N+E + IY    ++  +  ++
Sbjct: 178 GIVDIY-CLTEENPWRIELWGDEIDSIRSFDPESQRSLENLEELTIYPAVEHIGDKDMVS 236

Query: 394 TAMKYIKE------ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
               + +E      +   RL E          Q    R       L     C   E   +
Sbjct: 237 FLDYFPEERTIIFLDEPNRLTEKGGAVEEEYRQSRMHREEKGSRNLPENWLCS-FEQLQK 295

Query: 448 YLTGRN 453
            L  RN
Sbjct: 296 ELNKRN 301



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 74/202 (36%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +  +    L +PP++    +T V     E V + IN   
Sbjct: 716 VLTLTATPIPRTLHMSLIGIRDMSV----LEEPPMDRMPIQTYVMEYDEETVREAINREL 771

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
           ++G ++           D+   + +     R  + H ++   E   ++     G  DVLV
Sbjct: 772 RRGGQVYYVYNRVTDIADVALRIAKLVPDARVDFAHGQMSERELENVMYSFVNGDIDVLV 831

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + I D+D+ G  +    L Q  GR  R+  +            +
Sbjct: 832 STTIIETGLDISNVNTMIIHDSDRYGLSQ----LYQLRGRIGRSNRTAYAFLMYRKNVML 887

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
           +    ET  +R   +       
Sbjct: 888 K----ETAEKRLAAIREYTDLG 905


>gi|256374814|ref|YP_003098474.1| transcription-repair coupling factor [Actinosynnema mirum DSM
           43827]
 gi|255919117|gb|ACU34628.1| transcription-repair coupling factor [Actinosynnema mirum DSM
           43827]
          Length = 1187

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 86/517 (16%), Positives = 162/517 (31%), Gaps = 71/517 (13%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+  L     +      L G   + +    A +  +   P + +      A +L S  +
Sbjct: 18  KALRALADA--AGSPELELEGPP-AARPLVAAAL--SRTSPVLAVTATGREAEELASVLR 72

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +     AV  F S+ +    E   PR DT   +       + R+ H       +R    V
Sbjct: 73  DLVGPEAVAIFPSW-ETLPHERLSPRADTVGARLQV----LRRLAHPG-----DRPLRAV 122

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           V++V  +    +        + L  G   +   LL  L +  Y R D+   RG F V G 
Sbjct: 123 VATVRSLIQPMAPGLGDLEPLDLATGSEHDFDALLHRLAELAYTRVDMVEKRGEFAVRGG 182

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKIYANSHYVTPRPTLN 393
            +++FP   E    RV  +G+++ EI  F     + + + V+          +       
Sbjct: 183 ILDVFPPTAE-HPLRVEFWGDEVTEIRPFSVADQRSLPKQVDAFTAPPCRELLLTERVRA 241

Query: 394 TAMK-YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            A +   + E   +L E+  +                   L      + +E     L   
Sbjct: 242 RAQELAAEHEADAQLAEMLTK-------------------LAEGIPSEGMEALIPALCDG 282

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR---GDFHRKATLAEYGFRLPSCMD 509
                   L + +P+ + + V++      +   + R            A  G + P  +D
Sbjct: 283 ELQL----LTDLVPDGTHVLVNDPEKIRARARDLVRTGQEFLEASWMAAAGGGKAP--ID 336

Query: 510 NRPLRFEEWNCLRPTTIVVSA---TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
                +   + +            T      E    + +E              + + + 
Sbjct: 337 LGASAYRSLDEVADAARAADKPWWTLSQLTTEGSDVLRLE-----------FKHVHAYQG 385

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            V+  + ++      G   +L V     A+  TE L E  +    + S +    R     
Sbjct: 386 DVDRAFADLRAHTAAGGTAVLVVPGTGTAQRATEQLREAQVGAVCVDS-LDEPPRTGA-- 442

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                   V V    L +G  +PE  LV + + D  G
Sbjct: 443 --------VTVVRGALEDGFALPELALVVLTETDLTG 471



 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE-----INLAA 579
            + +SATP    LE     I E     + ++ PP E     T V    D+     I    
Sbjct: 775 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERHPILTYVGGYADKQVGAAIRREL 830

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     + E     R +  H ++   +  +II+     ++DVLV
Sbjct: 831 LRDGQVFYVHNRVSSIEKAARRIRELAPEARVVTAHGQMNEDKLEKIIQGFWEREYDVLV 890

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +   D  G  +    L Q  GR  R        +        
Sbjct: 891 STTIVETGLDISNANTLIVERGDLLGLSQ----LHQLRGRVGRGRERGYAYFLYPPESP- 945

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N +  
Sbjct: 946 ---LSETAHDRLATIAQNTELG 964



 Score = 42.0 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A Q G ++++ V T    ++     TE +    + VR +       E 
Sbjct: 657 GKTEIAVRAAFKAVQDGKQVVVLVPTTLLAQQHLNTFTERMRAFPVVVRGLSRFTDPTEA 716

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKT 669
            +    L  G  DV++G + LL++GL   + GLV + +  + G    + 
Sbjct: 717 EQTTTGLAEGDVDVVIGTHRLLQKGLRYKDLGLVIVDEEQRFGVEHKEH 765


>gi|298492665|ref|YP_003722842.1| transcription-repair coupling factor ['Nostoc azollae' 0708]
 gi|298234583|gb|ADI65719.1| transcription-repair coupling factor ['Nostoc azollae' 0708]
          Length = 1166

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 85/510 (16%), Positives = 178/510 (34%), Gaps = 60/510 (11%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
           A+L+  +  + +   L G++   K    + +     R   V+      A ++Y++ +   
Sbjct: 17  AELITKLK-KYQELRLNGISRLPKGLVASALANNEGRDLCVVCATLEEAGRVYAQMEAMG 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
                 Y  +    Y+P  + P T+    +   + + ++      +  L  RN  I+ + 
Sbjct: 76  WKTVHFYPAAEASPYEP--FDPETELSWGQMQVLADLVNGQWSVVSSQLPNRNTAIIATV 133

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            +    +  +E +    + LK G   +  E    +    Y+R  +    G +   GD ++
Sbjct: 134 GALQPHLPPLEVFRSFCLSLKKGLEYDLDEFSEKITSLGYERVPLVETEGQWSRRGDIVD 193

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK-IRNVETIKIYANSHYVTPRPTLNTAM 396
           +FP   E +  R+  FG++I++I EF P T +  +  VE I +   S             
Sbjct: 194 VFPVSSE-LPVRLEWFGDEIKQIREFDPATQRSALDKVEQIFLTPTSFSGI--------- 243

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
                        L    +  E + L   +  D++ LE       +E   R+L       
Sbjct: 244 ------------VLAALKQSSEFRVLSADLNSDVDDLENL----GLEGSRRFLGLAFA-- 285

Query: 457 PPPTLFEYIPEDSLLFVDESHVT-IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
            P +L +Y+  ++L+ +DE           +   D   +    E   ++P    +R    
Sbjct: 286 KPASLLDYLSANTLIAIDEVEQCHAHSARWVENADSQWRLGTGEESQQVPKI--HRTFNE 343

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                     + +S      EL +            T L   P+ +     Q   + ++I
Sbjct: 344 CLDEAGNFQKLYLS------ELAEENS--------GTNLASRPLPVTP--HQFAKLAEKI 387

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                +   + L       +  L   L E +   +++ +        + I  L++    +
Sbjct: 388 RQERDRKFAVWLISAQPSRSVSL---LQEHDCPAQFIPNPRD----YQAIGKLQINHTPI 440

Query: 636 LVGINLLR--EGLDIPECGLVAILDADKEG 663
            +  + L   EG  +P   LV + D +  G
Sbjct: 441 ALKYSGLAELEGFILPSFRLVIVTDREFYG 470



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 68/195 (34%), Gaps = 17/195 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      I E  +  T    PP   R  +T +     E V   I    
Sbjct: 769 VLTLSATPIPRTLYMSLSGIREMSLITT----PPPTRRPIQTHLAPLNPEIVRSAIRQEL 824

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      E+ T  L E     R+   H +++  E    +        D+LV
Sbjct: 825 DRGGQVFYVVPRVEGIEETTANLREMIPGGRFAIAHGQMEESELESTMLTFGNNDADILV 884

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA + G  +    L   +GRA    ++ +  +        
Sbjct: 885 CTTIIESGLDIPRVNTILIEDAHRFGLAQ-LYQLRGRVGRAGIQAHAWLFYHKQRELSDA 943

Query: 698 QLAIDETTRRREKQL 712
                   R R  Q 
Sbjct: 944 AR-----LRLRAIQE 953


>gi|330502559|ref|YP_004379428.1| transcription-repair coupling factor [Pseudomonas mendocina NK-01]
 gi|328916845|gb|AEB57676.1| transcription-repair coupling factor [Pseudomonas mendocina NK-01]
          Length = 1145

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 120/323 (37%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+      R  +V+      A +L  E   F P   V +F          
Sbjct: 21  LPGAALSLAIAEAASNAGRFTLVLTEGSQSAERLQEELAFFAPDLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R +A   L +     +VV   + ++ +          
Sbjct: 71  ---PDWETLPYDVFSPHQDIISQRIAALYRLPQLSRGILVVPIATALHRLAPKRFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ +++ + L    Y+  D     G F V G  I++FP    D  +R+ +F 
Sbjct: 128 LVLDVGQKLDVEQMRTRLEAAGYRCVDTVYEHGEFAVRGALIDLFPM-GSDTPYRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P   + +  VE+I++     +                  K  + +    G
Sbjct: 187 DEIETLRTFDPENQRSVDKVESIRLLPAREFPLE---------------KKAVTDFR--G 229

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           R  E   ++ R     + L +  +   IE Y          E   TLF+Y+P D+ +F  
Sbjct: 230 RFRERFDVDFRRCPIYQDLSSGITPAGIEYYLPLFF-----EETGTLFDYLPSDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I + +  +  D  +R   
Sbjct: 283 -SLPGIEKAAEQFWLDARNRYED 304



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DL E + E  I +   H +++  +  +++ D    +F+VLV   ++  G+D+P    + I
Sbjct: 827 DLAELVPEARIGIG--HGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIII 884

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ADK G  +    L Q  GR  R+ +           KS+  
Sbjct: 885 ERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPRKSMTE 923



 Score = 38.2 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTF 183
               ++  + + D   F     +  + DQ  AI  +   + + +   +L+ G  G GKT 
Sbjct: 576 AREGFAFQDPAVDYATFSAGFPFEETPDQQTAIDAVRNDMLAGKPMDRLVCGDVGFGKTE 635

Query: 184 T---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
                A +     +   V+ P  +LA Q Y+ F++ F    V
Sbjct: 636 VAMRAAFIAVHSGKQVAVLVPTTLLAQQHYNSFRDRFADWPV 677


>gi|225855741|ref|YP_002737252.1| transcription-repair coupling factor [Streptococcus pneumoniae
           P1031]
 gi|225724744|gb|ACO20596.1| transcription-repair coupling factor [Streptococcus pneumoniae
           P1031]
          Length = 1169

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 84/529 (15%), Positives = 187/529 (35%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   R  +++      A  L S
Sbjct: 12  DQ---IKKWHQNLTDKKR-QLILGLSTSTKALAIASSLEKEDR-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVEALRFLTDSS---KKG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S  ++   IV++ +G+   Q   +  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNAFKDSIVKISVGEEYAQHAFIHQLKENGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++I+ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    QS  +  ++L+ 
Sbjct: 235 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQSHADSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       ++  +  
Sbjct: 281 CY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  +     Q             ++  
Sbjct: 337 ------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  KT    E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK---LDSRDKTSICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQ 475



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 868

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 869 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 921

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 922 AYAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|325678530|ref|ZP_08158141.1| transcription-repair coupling factor [Ruminococcus albus 8]
 gi|324109749|gb|EGC03954.1| transcription-repair coupling factor [Ruminococcus albus 8]
          Length = 1153

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/501 (14%), Positives = 164/501 (32%), Gaps = 56/501 (11%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             L   +        + GV+G  K    A +  +     +++  ++  A ++ ++     
Sbjct: 15  KDLKNCLLKGYTPAAVTGVSGIHKAMLTAAL--SSLGSCLLICADEADATKVTADINEMA 72

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
                  +             P  D        I+ + +  R  A  +++     I+ +S
Sbjct: 73  GEQIACVY-------------PAKDMNFAYMEGISREYEHRRIEALSAIMSGRCRIMAAS 119

Query: 278 V-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + +C+ G     +  +    ++ G  ++ +EL   L+   Y R D       F V G  I
Sbjct: 120 MEACLQGTIPPSALKEYTFTIENGSEIDTEELQRKLLAAGYTRTDQVEGAAQFAVRGSII 179

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IFP   +    R+ ++G++++ ++ F   + ++  ++E+I I      + P        
Sbjct: 180 DIFPV-QDKQPVRIELWGDEVDTMAYFDTESQRRNESLESITIAPALEIIFPSE------ 232

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
               EEL  R+    K  R     ++ + I  D++++ +  +  +++ Y           
Sbjct: 233 ----EELISRMEAAAKAARGKLIDKIRENIQKDIDLINSGITLTNLDKYYTLAYN----- 283

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              T+F+Y        V E +  I +              +   G            R E
Sbjct: 284 ETATVFDYFG-GGFCAVSEYNNCIEKARASLAQLSEDLKIMYTEGILFK--------RLE 334

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA-RTQVEDVYDEI 575
            +          S   G   +     +     I+   L++      SA    +  + +E+
Sbjct: 335 GFCIDIGQAQ--SRILGMKTIFMDTFMRQLGDIKLKKLINTDCRQTSAWGGSMISLEEEL 392

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +     ++   +++    + + L E  I  +      +                 V
Sbjct: 393 KTLCENAYCTIVLAGSEKTVPIIVKDLCEAGIDAKQYSENCEIAPEK------------V 440

Query: 636 LVGINLLREGLDIPECGLVAI 656
            V    L  G D P  G+  I
Sbjct: 441 YVKTGSLSAGFDYPSIGVALI 461



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 15/189 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI    +I    +   P++          +   I+   ++G 
Sbjct: 763 ILTLSATPIPRTLNMALSGIRDMSVIEEPPMDRHPIQTYVIEHNEGVILQAISKELRRGG 822

Query: 584 RILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++           R    L   L +  I   Y H +++  E  EI R +   + D+LV  
Sbjct: 823 QVYYIHNRIDTILRTVNRLQSSLPDARI--GYAHGQMEEKELSEIWRQVVEHEIDILVCT 880

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            L+  G+D+P    + I DAD+ G  +    L Q  GR  R+       +     K    
Sbjct: 881 TLIETGIDVPNVNTLIIEDADRLGLSQ----LHQLRGRVGRSNRRAFAYFTFRRGK---- 932

Query: 700 AIDETTRRR 708
            ++ET  +R
Sbjct: 933 VLNETASKR 941


>gi|127512559|ref|YP_001093756.1| transcription-repair coupling factor [Shewanella loihica PV-4]
 gi|126637854|gb|ABO23497.1| transcription-repair coupling factor [Shewanella loihica PV-4]
          Length = 1160

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 123/307 (40%), Gaps = 37/307 (12%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           +KG+ S    Q L  +TG+ +  ++AK+ E      +V+ P+   A +L +E        
Sbjct: 12  VKGVKS---PQTLSQLTGAARAISLAKLCEQYSSMTLVVTPDTPSALRLEAELGYLLAPK 68

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
           ++           P    P  +T      S ++ +   R      +      +V+  +S 
Sbjct: 69  SI-----------PVMLFPDRETLPYDSFSPHQDLVSQRLETLSRIPSAGHSLVIVPMST 117

Query: 281 IY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
           +   +      +  ++ L  GD+   + + S LV   Y   +     G F V G  I++F
Sbjct: 118 LMVKLPPQSFLTGNVLLLSKGDNYPLEAVRSQLVNTGYHHVEQVYEHGEFAVRGSIIDLF 177

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P   +   +R+ +F +++E I EF P T +    +E+I++     +    PT + A++  
Sbjct: 178 PMGAQS-PYRIELFDDEVESIREFDPETQRSSGEIESIRLLPAKEF----PTNDAAIEGF 232

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
           ++  + +   + K     E + + Q ++              IE+Y          +   
Sbjct: 233 RQRYRRQFEVVVK-----EPESIYQMVSR-------KVMPAGIESYLPLFF-----DETA 275

Query: 460 TLFEYIP 466
           +LF+Y+P
Sbjct: 276 SLFDYLP 282



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 16/189 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R        V + +     +
Sbjct: 759 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDD--ATVREALLREILR 816

Query: 582 GLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++     +    E    ++   L E  +     H +++  +  +++ D    K++VLV
Sbjct: 817 GGQVYFLHNSVETIEKRAREIEALLPEARVVTA--HGQMRERDLEKVMSDFYHQKYNVLV 874

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +
Sbjct: 875 CTTIIETGIDVPSANTIIIERADNFGLAQ----LHQLRGRVGRSHHQAYAYLMMPHPKRM 930

Query: 698 QL-AIDETT 705
              AI    
Sbjct: 931 TKDAIKRLE 939


>gi|220907244|ref|YP_002482555.1| transcription-repair coupling factor [Cyanothece sp. PCC 7425]
 gi|219863855|gb|ACL44194.1| transcription-repair coupling factor [Cyanothece sp. PCC 7425]
          Length = 1169

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 86/528 (16%), Positives = 185/528 (35%), Gaps = 59/528 (11%)

Query: 160 LLKGIHSREKVQLLLGVTGSG---KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           L   + ++ + Q +L + G+    K    + + +  Q   +V+ P    A +  ++ +  
Sbjct: 15  LTTELLNKLQQQHVLDLKGAARLPKGLVASALAQGQQHNLLVITPTLEEAGRWAAQMEAL 74

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                  Y  S    Y+P  +    +    +   + + +   ++        +    +V+
Sbjct: 75  GWSTVHFYPTSEASPYEP--FDLEAEMTWGQLQVLADLLKAQQN---DKQAGQPGLAIVA 129

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +   +   +  V ++    + L  G  +E K L   L +  Y+R  +    G +   GD 
Sbjct: 130 TERALQPHLPPVAAFQPDCLTLTQGMEMELKPLSDRLAQLGYERVALVETEGQWSRRGDI 189

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I++FP   E +  R+  FG+++++I EF P T + + +++ + +   S        L  A
Sbjct: 190 IDVFPVACE-LPVRLEWFGDELDKIREFDPATQRSLDSIDQLILTPTSFSPIILSALQEA 248

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
                     +  +L+      E ++L               + Q+ E   R+L      
Sbjct: 249 ----------QRQQLKTVLAPEEQEKLA--------------TGQTPEGMRRFLGLAFA- 283

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +L +Y+P+++L+ +DE                       +    +P    +RP   
Sbjct: 284 -HPASLLDYLPDNTLIAIDEVDQCRAHSDRWVEAAAEHWQQ-IQSPLLIPI---HRPFNE 338

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                     +++S      EL +              L   PV       Q   + + +
Sbjct: 339 TLAPAEVFQRLLLS------ELVETVASSTSSP-ATLNLASRPVPAIP--HQFGKLAETL 389

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               ++   I L       +  L   L E +   ++    V        I  L++ +  +
Sbjct: 390 RTERERNFAIWLVSAQPSRSVAL---LQEHDCPAQF----VPNPNDFPAIDKLQIQRTPI 442

Query: 636 LVGINLLR--EGLDIPECGLVAILDADKEGF-LRSKTSLIQTIGRAAR 680
            +  + L   EG  +P   LV + D +  G  L +  S ++   RAA 
Sbjct: 443 ALKYSGLAELEGFILPTFRLVVVTDREFFGQHLLATPSYVRKRRRAAS 490



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 65/171 (38%), Gaps = 12/171 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E +   +    
Sbjct: 771 VLTLSATPIPRTLYMALSGVREMSLITT----PPPSRRPIKTHLAPYDPETIRSALRQEL 826

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      E++   L E     R    H +++  E    +     G+ ++LV
Sbjct: 827 DRGGQVFYVVPRVEGIEEVAAKLREMVPSARIAIAHGQMEEGELEATMLTFNNGEAEILV 886

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              ++  GLDIP    + I DA K G L     L   +GRA    ++ +  
Sbjct: 887 CTTIIESGLDIPRVNTILIEDAQKFG-LSQLYQLRGRVGRAGIQAHAWLFY 936



 Score = 40.8 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 16/149 (10%)

Query: 531 TPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSAR---------TQVEDVYDEINLAA 579
            P   ELE+        +Q+     +       R             + E     I  A 
Sbjct: 607 QPWQEELEESFPYQPTPDQVKAIQDVKRDMESDRPMDRLVCGDVGFGKTEVAVRAIFKAI 666

Query: 580 QQGLRILL----TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             G ++      T+LT++    L E      I++  ++      ER  I++ L+ G+ DV
Sbjct: 667 TAGKQVAFLAPTTILTQQHYHTLKERFAPYPIQIGLLNRFRSADERKNILQRLKTGELDV 726

Query: 636 LVGI-NLLREGLDIPECGLVAILDADKEG 663
           +VG   LL +G+   + GL+ I +  + G
Sbjct: 727 VVGTHQLLGKGVVFRDLGLLVIDEEQRFG 755



 Score = 38.5 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAP 201
            Y P+ DQ  AI  + + +   R   +L+ G  G GKT    + I       +    +AP
Sbjct: 618 PYQPTPDQVKAIQDVKRDMESDRPMDRLVCGDVGFGKTEVAVRAIFKAITAGKQVAFLAP 677

Query: 202 NKILAAQLYSEFKNFFPH 219
             IL  Q Y   K  F  
Sbjct: 678 TTILTQQHYHTLKERFAP 695


>gi|303230285|ref|ZP_07317052.1| transcription-repair coupling factor [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515068|gb|EFL57043.1| transcription-repair coupling factor [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 1096

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 112/277 (40%), Gaps = 22/277 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI-EAMQRPAIVMAPNKILAAQLYS 211
           Q  ++   LK    + K  ++ G++GS K+F +++ I E   +  I++  +K        
Sbjct: 11  QNPSMTDGLKAFRQKGK-SVIYGLSGSQKSFLLSRAIPEEQVQSIIIVVHDKEHKELWER 69

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +F  F+P+  V  F            +     +     S+  Q  +MR  +  +   R  
Sbjct: 70  DFSFFWPNVQVLPFP-----------ITERVEFTTVARSLEGQGAQMRALSMLAW-NRPV 117

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            ++ +       + S +      V L++  S+E+ ELL  LVK  Y+R D    RG F V
Sbjct: 118 VVLATIEEATQYVVSPQYVISQSVHLEVSQSIERDELLEKLVKIGYERVDQVEQRGHFSV 177

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD  +IFP + +D   R+  FG++I+ +  F   T + I  V+   +           +
Sbjct: 178 RGDIFDIFPVNSDD-PIRMEFFGDEIDTMRHFSVDTQRSIETVDAYTVTPFFLTSDDADS 236

Query: 392 LNTAMKY----IKEE---LKMRLIELEKEGRLLEAQR 421
              +       I +E   ++  L +  KE      Q 
Sbjct: 237 TLLSYAKDGLIIYDEPVRIQEALKKFLKEDATHRKQH 273



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 18/212 (8%)

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDVY 572
           +++EW       + +SATP    L      + E  +  T   D  PV+       +  + 
Sbjct: 689 KWKEWASNID-VLTLSATPIPRTLHMSLVGVREMSVISTPPEDRLPVQTYVVEYDMNLIA 747

Query: 573 DEINLAAQQGLRILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D I     +G ++   V  +      M E L + L +    V   H ++   +  EI+ D
Sbjct: 748 DAIKRELARGGQV-YFVYNRVASINHMGELLEQALPDLRYAVA--HGQMTGRQIEEIMTD 804

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G +DVL+  +++  GLDIP    + I DAD+ G  +    L Q  GR  R+      
Sbjct: 805 FYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQ----LYQMRGRVGRSRRRAYA 860

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
            +     K +  A +    +R K +E   +  
Sbjct: 861 YFMYRPDKMLSEAAE----KRLKAIEEFTELG 888


>gi|222152208|ref|YP_002561383.1| transcription-repair coupling factor [Streptococcus uberis 0140J]
 gi|222113019|emb|CAR40328.1| putative transcription-repair coupling factor [Streptococcus uberis
           0140J]
          Length = 1166

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/497 (15%), Positives = 176/497 (35%), Gaps = 60/497 (12%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
             QLL+G++GS K   +A   E+     +V+  ++  + +L S+         +  F S 
Sbjct: 24  GRQLLMGLSGSSKALAIAANFESQDEKLVVVTSSQNESEKLASDLSAILGEEYIYQFFSD 83

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER--NDCIVVSSVSCIYGIGS 286
            D    E      D  I             R  A + LL+      ++ S V     + S
Sbjct: 84  -DVAAAEFIFSSLDKTIS------------RVEAIKFLLDDTEKGILITSIVGLRVLLPS 130

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            +++    + L IG+      ++  L    Y +    +  G +   GD ++++    E+ 
Sbjct: 131 PKTFLTSYLSLSIGNEYNLDTIVKQLTTMGYHKVSQVLHPGEYSKRGDILDVYEITKEN- 189

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  FG++++ I EF   T   +  V  I+I   S  +  +      +  +++  K+ 
Sbjct: 190 PYRIEFFGDEVDGIREFNLDTQLSLSTVNEIEISPASDLILEKNDFIRGINNLEKAYKVA 249

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS-IENYSRYLTGRNPGEPPPTLFEYI 465
             +L+K         L + I+     +     C   I  +              TL +YI
Sbjct: 250 NDDLKK--------YLSEIIS-----VSKNDYCHKDIRKFISLFYQDK-----WTLMDYI 291

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
            +   +F D+    + + +       +      +    +PS +      +++    +P T
Sbjct: 292 TKGVPIFFDDFQKILDKNAKFDLEIANLLTDDLQSSKAIPS-LSYFDDNYKKIRNYKPAT 350

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
              +   G   ++  +     Q             ++   +Q   + DEI+   +    +
Sbjct: 351 FFSNFHKGLGNIKFDKIHQFTQYS-----------MQEFFSQFPLLIDEISRYQKSKSTV 399

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V ++   + L +   E +     + S            +L+  K  +++G   L  G
Sbjct: 400 IIQVESQHAYDRLMKNFSEYHFSAPLVSS-----------NELQRQKIQIVIGS--LSSG 446

Query: 646 LDIPECGLVAILDADKE 662
             + +  +  I + +  
Sbjct: 447 FYLADEKIAYITEREIY 463



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 16/191 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+     T    V + I     +G 
Sbjct: 762 VLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLETNPGLVREAIIREMDRGG 821

Query: 584 RIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +       +  + K+++E L E + E +I   ++H ++  ++    + D   G +DVLV 
Sbjct: 822 QCFYVYNKVDSIDKKVSE-LQELVPEASI--GFVHGQMSEIQLENTLIDFINGDYDVLVA 878

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DI     + + +AD  G L +   L   +GR+ R      I YA  + +  +
Sbjct: 879 TTIIETGVDISNVNTLFVENADHMG-LSTLYQLRGRVGRSNR------IAYAYLMYRPDK 931

Query: 699 LAIDETTRRRE 709
           +  + + +R E
Sbjct: 932 VLTEVSEKRLE 942


>gi|167623544|ref|YP_001673838.1| transcription-repair coupling factor [Shewanella halifaxensis
           HAW-EB4]
 gi|167353566|gb|ABZ76179.1| transcription-repair coupling factor [Shewanella halifaxensis
           HAW-EB4]
          Length = 1157

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 121/330 (36%), Gaps = 34/330 (10%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            + S +  Q L  ++G+ +  T+A + +  Q   +V+  +   A  L +E        ++
Sbjct: 11  AVKSAKLAQTLCTLSGAAQALTIANIAKQHQGVTLVVTADTPNAIGLEAELSYLLSEQSI 70

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                      P    P  +T      S ++ +   R  A   + +    +V+  V+ + 
Sbjct: 71  -----------PIWLFPDRETLPYDSFSPHQDLVSQRLEALSRIPQAQQSVVIVPVTTLM 119

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +      +  ++ L+ GD     ++   L+   Y   +     G F V G  I+IFP 
Sbjct: 120 VRLPPQSFLTGNVLMLEKGDKYRLLDVREQLINTGYHVVEQVYEHGEFAVRGSIIDIFPM 179

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
                 +R+ +F +++E I  F P T +  + +  I++     +    PT + A++  ++
Sbjct: 180 GSS-QPFRIELFDDEVETIRNFDPETQRSSKEINAIRLLPAKEF----PTDDAAIEGFRQ 234

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             + R   L KE   +             +M+        IENY          +   TL
Sbjct: 235 RYRRRFEVLVKEPGSI------------YQMVSKKTMPAGIENYLPLFF-----DETATL 277

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           F+Y+P+ + L       T  Q         
Sbjct: 278 FDYLPDSTQLVTVGDIETATQSHLNEVEAR 307



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 65/180 (36%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+          + + +     +G 
Sbjct: 759 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDEATIREALLREILRGG 818

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++     +    E    +++E L E  +     H +++  E   ++ D    +F+VLV  
Sbjct: 819 QVYFLHNSVETIEKRAAEISELLPEARVVTA--HGQMRERELERVMSDFYHQRFNVLVCT 876

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +  
Sbjct: 877 TIIETGIDVPSANTIVIERADNFGLAQ----LHQLRGRVGRSHHQAYAYLMTPHPKRMTK 932


>gi|307710364|ref|ZP_07646805.1| transcription-repair coupling factor [Streptococcus mitis SK564]
 gi|307618956|gb|EFN98091.1| transcription-repair coupling factor [Streptococcus mitis SK564]
          Length = 1169

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 85/522 (16%), Positives = 183/522 (35%), Gaps = 58/522 (11%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  ++   +  +++      A  L S
Sbjct: 12  DQ---IQKWHQNLTDKKR-QLMLGLSTSTKALAIASSLKKEDK-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  I  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDS--------PMVEFLISSQEKIISRVEALRFLTDSS---KRG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S   +   IV++ +G+  +Q  L+  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLILPSPNVFKDSIVKISVGEEYDQHALIHQLKEIGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++++ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PCRIEFFGDEVDGIRLFEVETQLSKENQTELTIFPASDVILREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    Q   +  ++L+ 
Sbjct: 235 YQRGRSALEKQVSKTLSPILK--------------SYLEEILSSFHQKQIHSDSRKFLSL 280

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               +   T+F+YI +D  +F D+    + Q     R          +      S M   
Sbjct: 281 CY--DKTWTIFDYIEKDIPIFFDDYQKLMNQYEVFERELAQYFTEELQNSKAF-SEMKYF 337

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
               + +    P T   +   G   L+  Q     Q             ++    Q   +
Sbjct: 338 ADTEQIYKKQSPVTFFSNLQKGLGNLKFDQIYQFNQYP-----------MQEFFNQFSFL 386

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +EI    +    I+L       ++ L + L E  I+   + S  K+    E +  +   
Sbjct: 387 KEEIERYKKMDYTIILQSSNSMGSKTLEDVLEEYQIK---LDSRDKSRICQESVNLIE-- 441

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
                     LR G    +  ++ I + +       +    Q
Sbjct: 442 --------GNLRHGFHFVDEKVLLITEHEIFQKKLKRRFRRQ 475



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 17/205 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 811

Query: 573 DEINLAAQQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           D +    ++G ++          +    +L E + E +I   Y+H  +  ++    + D 
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIDQKVSELQELIPEASI--GYVHGRMSEIQLENTLLDF 869

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I 
Sbjct: 870 IEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------IA 922

Query: 689 YADTITKSIQLAIDETTRRREKQLE 713
           YA  + +  + +I E + +R + ++
Sbjct: 923 YAYLMYRP-EKSISEVSEKRLEAIK 946


>gi|291278661|ref|YP_003495496.1| transcription-repair coupling factor [Deferribacter desulfuricans
           SSM1]
 gi|290753363|dbj|BAI79740.1| transcription-repair coupling factor [Deferribacter desulfuricans
           SSM1]
          Length = 1111

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 105/498 (21%), Positives = 172/498 (34%), Gaps = 92/498 (18%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           GS K+F +  +++  Q  ++++  N+    ++  E   F P   +  F      Y  E  
Sbjct: 11  GSSKSFLLRMLLKESQNSSLIICENRNEMEKVVQELNFFLPDTEILSFPE----YTHE-- 64

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV--SSVSCIYGIGSVESYSQMIV 295
            P  +  IE        I   R ++ + L+  ND  VV  +  S +  I S   +   I 
Sbjct: 65  -PFDEVKIESN------ILSERVTSLKKLITDNDQKVVVGTFYSILKKIFSKSDFKNSIY 117

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            LK+GDS+   EL   L    Y   +    +G F   GD  EIF    E    R   F +
Sbjct: 118 SLKVGDSISFDELRYILGYLGYVEVEYVGDKGEFIQRGDFFEIFLIDKE-YPVRCEFFDD 176

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE-LKMRLIELEKEG 414
           ++E I  F P+T +K+++V+ I I   +  +     L   +K IK+E ++ R+ E  K  
Sbjct: 177 ELEAIYYFDPVTIKKVKDVDAIDILPANEILCDEEDL---IKNIKDETVRERIKEFGKFA 233

Query: 415 RLLEAQRLEQRITYDLEMLETT--------GSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
            +       Q++T   E L           G    IENY  Y            L +   
Sbjct: 234 GVHWYAPYVQKLTPFWEYLGEVESVYFLGDGFQNKIENYFDY------------LLDKF- 280

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
                  +ESH         Y+  F  K  L  +            L   E+  L     
Sbjct: 281 -------EESHHFY-----NYKEIFASKNELEAF------------LDKHEFVILS---- 312

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                    E+++    +  ++   + +     E  +     E   D +    + G   +
Sbjct: 313 ---------EVDESSEKLPFRV--SSSINFFTPEGTNVYNNAERFIDRLKSLIKDGYSAV 361

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           ++   KR  E  T++L E  I                   DL   K  VL+       G 
Sbjct: 362 ISFNNKRFKEIFTQFLKEHEI----------AFVEGSKFYDLD--KCGVLIIDANFSGGF 409

Query: 647 DIPECGLVAILDADKEGF 664
                 L    D +  GF
Sbjct: 410 ISENYKLAVFTDYEIFGF 427



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 12/189 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+     + +  I  T   D  PV I+  +   E++ + I    ++G 
Sbjct: 721 VLTLTATPIPRTLQLSLSGLRDMSIINTPPQDREPVSIKIIKND-EELNNAILKELKRGG 779

Query: 584 RILLTVLTKRMAEDLTEYLYERNI--RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E +   L E+         H ++      E+      G  D+LV   +
Sbjct: 780 QVYFLHNKVEDIEKIAYMLKEKFPLSNTSIAHGQMDAKVLDEVFEKFYQGDVDILVCTTI 839

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDI     + I +A   G  +    L Q  GR  R                    I
Sbjct: 840 IENGLDIANANTIVINNAHTFGLAQ----LYQLKGRVGRGNKRGYCYLRIPQNAK----I 891

Query: 702 DETTRRREK 710
           +E  R+R K
Sbjct: 892 NEVARKRLK 900



 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 70/190 (36%), Gaps = 17/190 (8%)

Query: 476 SHVTIPQISGMYRGDFHRK-ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           +      I  +Y     R+     + G  L +     P     +       +V++     
Sbjct: 531 AKKLAVDILKIYAERKSRRGFAFTKSGEILKTVELRFP-----YEETEDQIVVINEVFND 585

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
            E    +  +   +    G     V IR+A   VE+      LA         TVL ++ 
Sbjct: 586 ME---SETPMERLVCGDVGFGKTEVAIRAAAKAVENYKQVAILAP-------TTVLVRQH 635

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGL 653
            ++  E   +  + + Y+     + E    +  L+ G+ D+++G + LL + ++  + GL
Sbjct: 636 YQNFIERFKDMPVEIDYISRFKTSREIKRALERLKKGEIDIIIGTHRLLSKDVEFYDLGL 695

Query: 654 VAILDADKEG 663
           + + +  + G
Sbjct: 696 LIVDEEQRFG 705


>gi|260435284|ref|ZP_05789254.1| transcription-repair coupling factor [Synechococcus sp. WH 8109]
 gi|260413158|gb|EEX06454.1| transcription-repair coupling factor [Synechococcus sp. WH 8109]
          Length = 1203

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/345 (16%), Positives = 126/345 (36%), Gaps = 45/345 (13%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A+   L    SR +  L+ G     +    + + +    P +++ P    A +  + 
Sbjct: 22  QETALTGELDERSSRPERLLMRGAGRCSRALVASALSKRRGAPLLMVVPTLEEAGRWTAL 81

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            +      A  Y  S    Y+P  + P +            +I   +      LL   + 
Sbjct: 82  LELMGWSQASLYPTSEGSPYEP--FDPTS------------EITWGQLQVLSDLLGEPNA 127

Query: 273 I---VVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
               +V++  C+   +   +        L+ GD V+ + L  +L +  Y+R       G+
Sbjct: 128 ASWAIVATERCLQPHLPPPDVLKTKTRTLRKGDEVDLEALGETLAQLGYERVTTIEQEGS 187

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           +   GD ++IFP   E +  R+  FG +++++ EF P + + +  V+ +++         
Sbjct: 188 WSRRGDIVDIFPVSSE-LPVRLEFFGEELDKLREFDPASQRSLDPVDALRLTPTGFGPL- 245

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
                     I ++L+  + +  ++    E            E +   G+ + +    R 
Sbjct: 246 ----------IADQLRETMPDGLEQLLGAEG----------TEQILNGGTPEGM----RR 281

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           L G   G  P +L +Y+P+ + + +DE    +             
Sbjct: 282 LMGLAWG-HPASLLDYLPDTTTVVIDERRQGLAHGQQWLSHVEEH 325



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 75/196 (38%), Gaps = 19/196 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E V   I    
Sbjct: 783 VLTLSATPIPRTLYMSLSGVREMSLITT----PPPLRRPIKTHLASLDPEAVRSAIRQEL 838

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      +++   L      +++   H ++   E    +     G+ DV++
Sbjct: 839 DRGGQVFYVVPRVEGIDEVAAGLRAMLPGLKLLVAHGQMAEGELENAMVAFNAGEADVML 898

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA + G  +    L   +GR+    ++ +           
Sbjct: 899 CTTIVESGLDIPRVNTILIEDAHRFGLAQ-LYQLRGRVGRSGIQAHAWLFY-------PG 950

Query: 698 QLAIDETTRRREKQLE 713
             ++ +T R+R + ++
Sbjct: 951 NASLSDTARQRLRAIQ 966


>gi|295104237|emb|CBL01781.1| transcription-repair coupling factor [Faecalibacterium prausnitzii
           SL3/3]
          Length = 1171

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 91/514 (17%), Positives = 157/514 (30%), Gaps = 90/514 (17%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
               L G+  +G+    A + + + R   ++ P +  A     + K      AV      
Sbjct: 23  GPAALFGLPPAGRALLYAALQKDLGRVLCIVTPGEAEATHFADDLKALGLTAAV------ 76

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
                     P  D  +        + +  R S   +L       V      +       
Sbjct: 77  ---------FPPRDFMLRPVEGAGREYEYRRLSVLGALAGGRLQAVCVPAEALLQYTVPR 127

Query: 289 -SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             + Q  + LK G    ++ L++ L    Y R+      G F V GD ++I+   +   A
Sbjct: 128 AEFIQNTLTLKPGMVYNREALVARLFAAGYVRRSQVDGPGQFSVRGDIVDIYAPDMRQPA 187

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH--YVTPRPTLNTAMKYIKEELKM 405
            RV  + ++I+ +S F  LT ++   +E I +       + +   T       IK+    
Sbjct: 188 -RVEYWDDEIDSMSSFDLLTQRRDGALEKIYLSPAREVLFGSTAETAEALRDAIKKARGK 246

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
               LEK                DL  L++    ++++ Y      R P   P TL +++
Sbjct: 247 HRTALEKA------------TEADLSQLDSGLMPEAMDKYY---GIRYP--APATLLDHL 289

Query: 466 PEDSLLFV-DESHVTIPQISGMYRGDFHRKATLAEYGFRLPS--------------CMDN 510
             D+ LF+ DE                     L E G   P                  N
Sbjct: 290 --DAPLFILDEVGGIRDAQKATEFRRSEELTGLLEEGVLCPGLDVLYQTMDDLVIAAQSN 347

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             L  E +                 E +    I  E    P                +  
Sbjct: 348 STLLCENFLRGMN------------EFKLKDLINAEAFAAPN-----------WNGDLAS 384

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + ++++    QG  + L   T + A  LT  L ++   V        ++ R         
Sbjct: 385 LREDLDPLIAQGYAVTLFAGTPKGAAALTRDLADKGYAV--------SMSRDVCPAK--- 433

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           G   VL G   L  G   P     A+L + + G 
Sbjct: 434 GVLQVLPGH--LTAGCTFP-FAHAAVLSSRRHGL 464



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 7/176 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI     I    +   PVE          + + +     +G 
Sbjct: 763 MLTLSATPIPRTLNMAMSGIRDLSTIEQPPIERQPVETFVLEYNDVILAEAMKKELARGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E    ++ +     R    H ++   E   + + L  G+ D+LV   L
Sbjct: 823 QVYYLHNRVDNIEACAAHVSQMVPGARVGIAHGKMTEEELNPVWQHLLNGEIDILVCTTL 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  G+D+  C  + I DAD+ G  +    L Q  GR  R+       +     K++
Sbjct: 883 IETGIDVRNCNTLIIEDADRMGLAQ----LYQIRGRVGRSGRKAYAYFTFRRDKTL 934


>gi|124023141|ref|YP_001017448.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9303]
 gi|123963427|gb|ABM78183.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9303]
          Length = 1193

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 93/513 (18%), Positives = 182/513 (35%), Gaps = 64/513 (12%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +L+    +R    L+ G    G+    + +     RP +V+ P    A +  S       
Sbjct: 18  ELVDR-SNRSDRLLMRGAGRVGRALIASAIARHQSRPLVVIVPTLEEANRWSSLLALMGW 76

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
            +   Y  S    Y+P  + P T+    +   ++E +         S    +  IV +  
Sbjct: 77  SHNHLYPTSEGSPYEP--FDPTTEIVWGQLQVLSELL-------GESTRRWDRAIVATER 127

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           +    +  VE+ +     L  G++++ + L S+L K  Y R        T+   GD ++I
Sbjct: 128 ALQPHLPPVEALASQCEILSRGENIDLESLASTLTKLGYDRVTAVDQEATWSRRGDIVDI 187

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP   E +  R+ +FG++++++ EF P+T + +  V  + +  +                
Sbjct: 188 FPVSSE-LPVRLELFGDELDKLREFDPVTQRSLDEVNELCLTPSGFSPL----------- 235

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           I  +L+  +   +   RL+  + L+Q        L    +   I    R L G      P
Sbjct: 236 IAHQLRQSMP--DGLDRLVSEETLDQ--------LFEGSTPDGI----RRLMGIAWN-KP 280

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
            +L +YIP +S + +DE            +           +     S   +   + + W
Sbjct: 281 ASLLDYIPANSFIAIDEKRHGSAHGKLWLQHAEEH------HNDVGQSMGLSIDEQKKYW 334

Query: 519 NCLRPTTI--VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
             L   +I    + T G   ++  +    +       L   P+       Q   + ++I 
Sbjct: 335 PPLLHRSIGESYANTDGFAGIDLAELHEDDGYANSFDLASRPIPANP--NQFGRLGEQIK 392

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-----HSEVKTLERIEIIRDLR-L 630
              +    + L       A  L   L E +   R++     H  ++ L        L+  
Sbjct: 393 NYQKAHHPVWLLSAQPSRAVAL---LEEHDCITRFVPNAKDHPAIERLLEQNTPVALKTS 449

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           G  D+        EGL +P   +V + D +  G
Sbjct: 450 GSVDL--------EGLILPAWRVVLMTDHEFFG 474



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 70/197 (35%), Gaps = 21/197 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E V   I    
Sbjct: 773 VLTLSATPIPRTLYMSLSGVREMSLITT----PPPLRRPIKTHLAAFDEEAVRSSIRQEL 828

Query: 580 QQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +G ++   V      ED    L + L +  + V   H ++   E    +     G+ D+
Sbjct: 829 DRGGQVFYVVPRVEGIEDVASQLQQMLPDLKLLVA--HGQMAEGELESSMVAFNAGEADL 886

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           ++   ++  GLDIP    + I DA K G  +    L   +GR+    ++ +    D    
Sbjct: 887 MLCTTIVESGLDIPRVNTILIEDAHKFGLAQ-LYQLRGRVGRSGVQAHAWLFYPGDASLS 945

Query: 696 SIQLAIDETTRRREKQL 712
                     R R  Q 
Sbjct: 946 DAAR-----QRLRAIQE 957


>gi|33240450|ref|NP_875392.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33237978|gb|AAQ00045.1| Transcription-repair coupling factor [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 1170

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 91/533 (17%), Positives = 180/533 (33%), Gaps = 93/533 (17%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +++K +  + K+  + G + S K  T++ +     +P +V+ P    A++  +      
Sbjct: 17  EEIVKRVVKKGKLS-INGGSTSAKAITISSLALKSNKPVLVIVPTLEEASRW-NSIMQIL 74

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE---RNDCIV 274
             N V  +             P ++    +   I+++I+  + S    LL    R+   +
Sbjct: 75  GWNKVLLY-------------PSSEVSPYESIEISKEIEWAQLSVLSELLANDYRDPMAI 121

Query: 275 VSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           + +   +   +   E   +  V +  G+ +    L  +L+K  Y++       GT+   G
Sbjct: 122 ICTERALQPHLPRPELMLENSVSIIKGNELNLDNLSRNLIKIGYEKTTTTEQEGTWSRRG 181

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN-----SHYVTP 388
           D I+IF +   ++  R+ +FG++I++I EF P+  + +  +  I+I        +     
Sbjct: 182 DIIDIF-AVNNELPIRIELFGDNIDKIREFDPINQRSLDEINNIRISPVSINKITFNNLS 240

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
              L      IK E++  + EL +  +  +                              
Sbjct: 241 NNELKRKDNNIKHEIEGTIEELLEITQAKD------------------------------ 270

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
                      TL  YI +DSL+ +DE    +                L     R  +  
Sbjct: 271 ----------STLMNYIHKDSLICIDEKKQCVSHNENWINHLRITFNELM----RDNTLK 316

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           DN  +    +N       + S       +E     I         L    +       Q 
Sbjct: 317 DNNSINILNYNDKNQ---INSLLEDFKIIEMSNDSISINQDESFHLNSSKIVTYP--NQF 371

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-----HSEVKTLERIE 623
             + + I    ++   I L       A  L   L E     +++      S + +L   +
Sbjct: 372 SKISELIREFQKKKYSIWLLSAQPSRASAL---LEEHECITKFVQNNLDISHINSLIEFK 428

Query: 624 IIRDLRL-GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
               L+L G  D+        EG+D+       +L  DKE F +   S    I
Sbjct: 429 TPVSLKLHGNIDI--------EGVDL--SQWKVLLLTDKELFGQQIVSSTGFI 471



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      + E  +I         ++      + E +   I     +G 
Sbjct: 760 VLTLTATPIPRTLYMSLSGVREMSLITTPPPQRRAIKTHLVSKENEIIRSAICQEIGRGG 819

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I   V      E++   + +    ++ +  H ++   E    +     G+ D+++   +
Sbjct: 820 QIFYVVPRIEGIEEVATEIKQMVPNIKLIIAHGQMNEGELENAMIAFNAGEADLMLCTTI 879

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT--ITKSIQ- 698
           +  GLDIP    + I DA K G L     L   +GR+    ++ +    D      + Q 
Sbjct: 880 IESGLDIPRVNTILIEDAHKFG-LSQLYQLRGRVGRSGVQAHAWLFFPQDKEVTNNASQR 938

Query: 699 -LAIDE 703
             AI E
Sbjct: 939 LKAIQE 944


>gi|256827273|ref|YP_003151232.1| transcription-repair coupling factor Mfd [Cryptobacterium curtum
           DSM 15641]
 gi|256583416|gb|ACU94550.1| transcription-repair coupling factor Mfd [Cryptobacterium curtum
           DSM 15641]
          Length = 1155

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 96/504 (19%), Positives = 175/504 (34%), Gaps = 81/504 (16%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           +G+  S + F  A       +P +V+   +  AA        +   N V  F    DY  
Sbjct: 31  MGLAASARPFFTAARFARTPQPTLVIVAGEESAADFARTLSAYVGDNRVLRFFERKDY-- 88

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI-GSVESYSQ 292
                P   T ++  +         R  A  +L+E  +CIVV+S   +  + G V S   
Sbjct: 89  -----PTASTPVDVHAV------ACRLQALHALVESRECIVVASSRALMRLMGPVRSRFY 137

Query: 293 MIVQLKIGDSV----------EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           + +    G  V            +     LV   Y         GTF V G +I+++P +
Sbjct: 138 LPLTFTAGMDVQSGSGERTIASFEAATEELVACGYLNTGELSGPGTFCVGGGTIDVWPGN 197

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
           L     R+  FG++++EI    P TGQ I  ++ + IY    Y+  R  L+ A       
Sbjct: 198 LS-YPVRIDFFGDEVDEIRRIVPATGQTIARIDKVDIYPLREYMPDRAALDRA------- 249

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
              R++        +  + L        E LE     ++ +    YL          TL 
Sbjct: 250 --RRILFDPDTTDPVLRESL--------EALEGGVYNEAADALLPYLYAHL-----ATLG 294

Query: 463 EYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW-NCL 521
           +++P D+L  + E    I                           + + P+    +   L
Sbjct: 295 DFLPSDALSVLVEPRSLIDDALHAAE------------------ALSSLPVEHTRFVEDL 336

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR--TQVEDVYDEINLAA 579
                     P   +  + Q    + I+R    VD  + ++        E ++  +    
Sbjct: 337 ICP-------PAKLDFGKNQRCTYQSIMRVASSVDAEIPVKRTEVAGDPEKLFGRLISLT 389

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q    ++ +  + R  ED+     ER + +     ++   +   +   LR G  +V+   
Sbjct: 390 QADFTVVFSAPSYRAREDMKLAFVERGLSI----VDLANADADTVPARLRRGVVNVV--E 443

Query: 640 NLLREGLDIPECGLVAILDADKEG 663
             +  GL IP+  +  I  +D +G
Sbjct: 444 ADIPLGLIIPKAKIALISLSDTQG 467



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 72/195 (36%), Gaps = 10/195 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    ++    G+    +I        P+++       + V D I     +  
Sbjct: 760 VLTLSATPIPRTMQMSLSGVRDMSLIMTPPDDRKPIKVHVGEWDPDVVSDAIRRELARNG 819

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       R  +D    + +     R    H ++   +  +++ +   G+ DVLV   +
Sbjct: 820 QVYYVSNRVRTIDDAVARVGQAAGEARIGVAHGQMSKEQLEQVMEEFAAGEIDVLVATTI 879

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D P    + I D+ + G  +    + Q  GR  R+       +       +    
Sbjct: 880 IESGIDNPHTNTLIIEDSQRLGLAQ----MYQLKGRVGRSSLQAYAYFMFPENVPLT--- 932

Query: 702 DETTRRREKQLEHNK 716
           +E T R E   E+ +
Sbjct: 933 EEATARLEAVGEYQE 947



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 8/158 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            Y  + DQ AAIA +   + S R   +L+ G  G GKT      A       +  +V+ P
Sbjct: 607 PYQETPDQLAAIADVKADMRSARPMDRLICGDVGFGKTEVALRAAFKATQDGKQVMVLCP 666

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
             ILA Q Y+ FK+ F    V   V     +  E            + +++  +   R  
Sbjct: 667 TTILAQQHYTTFKDRFEEYGVTVEVLSRFRFSSEQ---AAALSGFAQGTVDVLVGTHRLL 723

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
            +R +   +  +V+      +G+G  E    +   + +
Sbjct: 724 -SRDVNPHDLGLVIIDEEQRFGVGHKEQLKNLRESIDV 760


>gi|167032697|ref|YP_001667928.1| transcription-repair coupling factor [Pseudomonas putida GB-1]
 gi|166859185|gb|ABY97592.1| transcription-repair coupling factor [Pseudomonas putida GB-1]
          Length = 1141

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 122/316 (38%), Gaps = 40/316 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   +  R  +++  +   A +L  E + F P   V  F          
Sbjct: 13  LPGAALSLAIAEAATSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPF---------- 62

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI-VVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E +  I VV   + ++ +          
Sbjct: 63  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPTRFLLGSS 119

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G +++ +++ + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 120 LVLDVGQTIDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPM-GSKLPYRIDLFD 178

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  V+++++     +   +  +       K   + R        
Sbjct: 179 DEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRF----KARFRERFD------ 228

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +      IE Y          E   TLF+Y+P D+ +F  
Sbjct: 229 -------VDFRRSAIFQDLASGIIPAGIEYYLPLFF-----EETSTLFDYLPADTQVF-- 274

Query: 475 ESHVTIPQISGMYRGD 490
            S   + Q +  +  D
Sbjct: 275 -SLPGVEQAAEHFWND 289



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DL E + E  I +   H +++  E  +++ D    +F+VLV   ++  G+D+P    + I
Sbjct: 822 DLAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVI 879

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             ADK G  +    L Q  GR  R+ +     YA  +T + Q    +  +R E
Sbjct: 880 ERADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPTRQKVSADAEKRLE 925



 Score = 40.8 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 4/131 (3%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTF 183
             + ++  + S D   F     +  + DQ AAI  +    +  +   +L+ G  G GKT 
Sbjct: 571 ARKGYAFADPSADYATFSAGFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTE 630

Query: 184 T---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
                A +     R   V+ P  +LA Q Y+ F++ F    V   V        E     
Sbjct: 631 VAMRAAFIAVHSGRQVAVLVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAA 690

Query: 241 TDTYIEKESSI 251
            D    K   +
Sbjct: 691 ADLAEGKIDIL 701


>gi|307705912|ref|ZP_07642750.1| transcription-repair coupling factor [Streptococcus mitis SK597]
 gi|307620573|gb|EFN99671.1| transcription-repair coupling factor [Streptococcus mitis SK597]
          Length = 1168

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 82/529 (15%), Positives = 185/529 (34%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +    +  +++      A  L S
Sbjct: 11  DQ---IKKWHQNLTDKKR-QLMLGLSTSTKALAIASSLRQEDK-IVLLTSTYGEAEGLVS 65

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 66  DLISILGEELVYPFLVDDS--------PMVEFLMSSQEKIISRVEALRFLTNSS---KKG 114

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S   +   IV++ +G+  +Q  L+  L +  Y++      +G F +
Sbjct: 115 ILVCNIAASRLILPSPNIFKDSIVKITVGEEYDQHALIHQLKEIGYRKVTQVQTQGEFSL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +   R+  FG++++ I  F   T     N   + I+  S  +     
Sbjct: 175 RGDILDIFEISQLE-PCRIEFFGDEVDGIRSFEVETQLSKENQTELTIFPASDILLREKD 233

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L  + K              +Y  E+L +    Q   +  ++L+ 
Sbjct: 234 YQRGQSALEKQISKTLSPILK--------------SYLEEILSSFHQKQIHSDSRKFLSL 279

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               +   T+F+YI +D+ +F D+    + Q       ++  +  +       +E  +  
Sbjct: 280 CY--DKIWTVFDYIEKDTPIFFDDYQKLMNQYEVFERELAQYFTEELQNSKAFSEMQY-- 335

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                        +    P T   +   G   L+  Q     Q             ++  
Sbjct: 336 ------FADTEHIYKKQSPVTFFSNMQKGLGNLKFDQIYQFNQYP-----------MQEF 378

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  K+    E 
Sbjct: 379 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDVLEEYQIK---LDSRDKSRICQES 435

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 436 VNLIE----------GNLRHGFHFVDEKILVITEHEIFQKKLKRRFRRQ 474



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 85/205 (41%), Gaps = 17/205 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 751 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 810

Query: 573 DEINLAAQQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           D +    ++G ++          +    +L E + E +I   Y+H ++  ++    + D 
Sbjct: 811 DAVLREMERGGQVYYLYNKVDTIDQKVSELQELIPEASI--GYVHGQMSEIQLENTLLDF 868

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I 
Sbjct: 869 IEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------IA 921

Query: 689 YADTITKSIQLAIDETTRRREKQLE 713
           YA  + +  + +I E + +R + ++
Sbjct: 922 YAYLMYRP-EKSISEVSEKRLEAIK 945


>gi|289166915|ref|YP_003445182.1| transcription-repair coupling factor [Streptococcus mitis B6]
 gi|288906480|emb|CBJ21310.1| transcription-repair coupling factor [Streptococcus mitis B6]
          Length = 1169

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 80/529 (15%), Positives = 182/529 (34%), Gaps = 72/529 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ   I +  + +  +++ QL+LG++ S K   +A  +E   +  +++      A  L S
Sbjct: 12  DQ---IKKWHQSLTDKKR-QLILGLSTSTKALAIASSLEKEDK-IVLLTSTYGEAEGLVS 66

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +  +      V  F+            P  +  +  +  I  +++ +R     S   +  
Sbjct: 67  DLISILGEELVYPFLVDDS--------PMVEFLMSSQEKIISRVEALRFLTDSS---KRG 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V +  +    + S   + + I+++ +G+  +Q  L+  L +  Y++      +G F +
Sbjct: 116 ILVCNIAASRLFLPSPTGFKESIIKIVVGEEYDQNALMHQLKEIGYRKVTQVQTQGEFSL 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD ++IF     +  +R+  FG++++ I  F   T     N   + I+  S  +     
Sbjct: 176 RGDILDIFEISQLE-PYRIEFFGDEVDGIRSFEVETQLSKENKTELTIFPASDILLREKD 234

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                  +++++   L           +  L+  +   L              +S     
Sbjct: 235 YQRGQSALEKQISKTL-----------SPILKSYLEEILSSFHQKQIHSDSRKFSSLCY- 282

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRGDFHRKATLAEYGFRL 504
               E   T+F+YI +D  +F D+    + Q       ++  +  +       +E  +  
Sbjct: 283 ----EKTWTVFDYIEKDIPIFFDDYQKLMNQYEIFERELAQYFTEELQNSKAFSEMQY-- 336

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                      + +    P T   +   G   L+  Q     Q             ++  
Sbjct: 337 ------FADTEQIYKKQSPVTFFSNLQKGLGNLKFDQIYQFNQYP-----------MQEF 379

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q   + +EI    +    I+L       ++ L + L E  I+   + S  K++   E 
Sbjct: 380 FNQFSFLKEEIERYKKMDYTIILQSSNSMGSKALEDMLEEYQIK---LDSRNKSIICKES 436

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           +  +             LR G    +  ++ I + +       +    Q
Sbjct: 437 VNLIE----------GNLRHGFHFVDEKILVITEHEIFQKKLKRRFRRQ 475



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 13/203 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 752 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNESVIR 811

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRL 630
           D +    ++G ++          +     L E      V Y+H  +  ++    + D   
Sbjct: 812 DAVLREMERGGQVYYLYNKVDTIDQKVSELQELIPEASVGYVHGRMSEIQLENTLLDFIE 871

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G++D+LV   ++  G+DIP    + + +AD  G L +   L   +GR+ R      I YA
Sbjct: 872 GQYDILVTTTIIETGVDIPNANTLFVENADYMG-LSTLYQLRGRVGRSNR------IAYA 924

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
             + +  + +I E + +R + ++
Sbjct: 925 YLMYRP-EKSISEVSEKRLEAIK 946


>gi|120610265|ref|YP_969943.1| transcription-repair coupling factor [Acidovorax citrulli AAC00-1]
 gi|120588729|gb|ABM32169.1| transcription-repair coupling factor [Acidovorax citrulli AAC00-1]
          Length = 1163

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 70/430 (16%), Positives = 149/430 (34%), Gaps = 50/430 (11%)

Query: 178 GSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           GS     +A+V E     +R   ++  +   A +L  E   F P      F  + +    
Sbjct: 19  GSADALLLARVAEREKAARRTTAIVTADATDAQRLIDEMAFFAPELRCALFPDW-ETLPY 77

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           + + P  D   E+ +++  +I +      +      D ++V + + +Y +      +   
Sbjct: 78  DTFSPHQDLISERLATL-WRISQ------KDRDTGADVVLVPATTALYRLAPPSFLAAYT 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
              K+   +++ +  + L    Y      +  G + V G  I++FP     V +RV +F 
Sbjct: 131 FHFKVRQKLDEAKFRAQLTLAGYSHVSQVVSPGEYAVRGGLIDLFPM-GSPVPYRVDLFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P T + +  V  +++     +                    R     +  
Sbjct: 190 DEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDD--------------AARAKFRSRWR 235

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
            LLE    + RI  D   +    +   IE Y          +   T+F+Y+ ED+ + + 
Sbjct: 236 ELLEGDPTKSRIYKD---MGNGVATAGIEYYLPLFF-----DETATVFDYLGEDATVVL- 286

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC-MDNRPLRFEEWNCLRPTTIVVSATPG 533
             H  +      +  D   +  L +     P+   ++  L  E++         ++  PG
Sbjct: 287 --HGDLEPAFQRFWHDTKERFRLVQGDPDRPALPPESLFLGIEQFYTRANVHAQLALRPG 344

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
             ++                 +     +R A   +  ++  I        R+LL   +  
Sbjct: 345 VEDVADNADFQK---------LGDLSVVRGAEDPLARLHAHIRDTR---HRVLLLAESDG 392

Query: 594 MAEDLTEYLY 603
             E L ++L 
Sbjct: 393 RRESLLDFLR 402



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L E L E  I V   H ++   E  +++RD    ++++L+   ++  G+D+P    + + 
Sbjct: 839 LEEILPEARIAVA--HGQMPERELEKVMRDFVAQRYNILLCSTIIETGIDVPTANTIIMS 896

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ADK G  +    L Q  GR  R+ +             +  
Sbjct: 897 RADKFGLAQ----LHQLRGRVGRSHHQAYAYLMVPDVDGLTK 934


>gi|148360394|ref|YP_001251601.1| transcription repair coupling factor [Legionella pneumophila str.
           Corby]
 gi|296106539|ref|YP_003618239.1| transcription-repair coupling factor (superfamily II helicase)
           [Legionella pneumophila 2300/99 Alcoy]
 gi|148282167|gb|ABQ56255.1| transcription repair coupling factor [Legionella pneumophila str.
           Corby]
 gi|295648440|gb|ADG24287.1| transcription-repair coupling factor (superfamily II helicase)
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 1153

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 79/501 (15%), Positives = 167/501 (33%), Gaps = 63/501 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +A+  +      +++  + + A+QL  E + F   N            Q  
Sbjct: 20  LYGSSLALALAEYCQQTPGIKLLITQDNLCASQLQDELQFFLNPNQN---------PQEL 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
            + P  +T    + S ++ I   R      + +  + I++SS S +   +   E  +Q  
Sbjct: 71  LFFPDWETLPYDQFSPHQDIISERLYTLSRIQQITNGIIISSASTLMHRLSPPEFLNQYA 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + LK G  ++     + L +  Y   +  +  G + + G  I+++P     + +R+ +F 
Sbjct: 131 LMLKEGQKLDLNSFRNQLQQAGYHCVNKVLEHGEYALRGSIIDVYPM-GSGLPFRIELFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE + EF P T + I  +  I +     +              + +L  R    E   
Sbjct: 190 DEIESLREFDPETQRTIEKINQIHLLPAREFPLNE----------QSQLHFRRAFRESFP 239

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                           E +  +     IE Y          +   T F+Y+P ++ + + 
Sbjct: 240 GNPSH-------CPIYEAISNSQFPSGIEYYLPLFF-----DKTVTFFDYLPANAKICLI 287

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           E           +R    R               D         NC    T +++    +
Sbjct: 288 E--EIQENAERFWRELNERYEQRR---------HDVSRPILTPDNCFINPTELLTKA-NN 335

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSA----RTQVEDVYDEINLAAQQGLRILLTVL 590
           +E    Q  +  +     G ++  +         R  +E +       +    R L+ V 
Sbjct: 336 YE----QVRLYHKPSEKKGALNFNIAKAPQLPIDRKNIEPLRQLSEYCSDPTRRYLIVVE 391

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           +    E L + L   +I  R  HS +          D    +  + +    L  G ++ +
Sbjct: 392 SAGRREVLLDLLKSSHIIPRTQHSWL----------DFIHDESPINITTGPLIYGCELTD 441

Query: 651 CGLVAILDADKEGFLRSKTSL 671
             +V I+++   G   +    
Sbjct: 442 KQIVIIVESQLFGEQSTPQRR 462



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 68/176 (38%), Gaps = 11/176 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-DVYDEINLAAQQGL 583
            + ++ATP    L      I +  +  T            + + +  + + I     +G 
Sbjct: 754 ILSMTATPIPRTLNMAMAGIRDISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGG 813

Query: 584 RILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T  R+ +DL   + E  I+    H +++  +   I+ D    +F+VLV  
Sbjct: 814 QVFYLHNNVQTIERVCQDLEALVPEAKIQSA--HGQMRERQLERIMSDFYHHRFNVLVCT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +           K
Sbjct: 872 TIIETGIDIPTANTIIIDRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNEK 923



 Score = 42.8 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 146 DYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            +  + DQ  AI Q+++ + S R   +L+ G  G GKT      A V     +   ++AP
Sbjct: 601 PFTETPDQLQAIEQIIRDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAP 660

Query: 202 NKILAAQLYSEFKNFFPHNAV 222
             +LA Q +  F++ F    V
Sbjct: 661 TTLLAGQHFESFRDRFAEFPV 681


>gi|268608427|ref|ZP_06142154.1| transcription-repair coupling factor [Ruminococcus flavefaciens
           FD-1]
          Length = 1160

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 79/503 (15%), Positives = 172/503 (34%), Gaps = 62/503 (12%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             + + I        + G++   +   +  +  +  +  +V+  ++  A +L  +     
Sbjct: 15  KSVREAIDKNISPVSVTGLSHIHRAHLIHAL--SGDKINLVITGSEAEAKKLCDDINAMS 72

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
              +   F             P  +       S N + + MR SA    +     ++ +S
Sbjct: 73  GSESAVLF-------------PSKEYVFTPVDSTNHEYEHMRISALSRAVSGKCSVICAS 119

Query: 278 VSC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           +   +     V       ++L+ G  V+  +L  +L K  Y+R +       F + G  +
Sbjct: 120 IEAVMQPTIPVGVLIASGIELQQGQEVDLTQLAVTLSKCGYQRCEKVEGASQFSIRGSIL 179

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IFP    D   R+ ++G++I+ ISEF   + ++   +E I+I   S  +          
Sbjct: 180 DIFPVQS-DKPVRIELWGDEIDSISEFETDSQRRTDPLEKIEISPASEVLYDN------- 231

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
                EL  ++  L K+ R    + + + +  D+  L++         Y   + G     
Sbjct: 232 ----AELAEKIEALCKKVRGKRMELVREHLGADVHRLQSGEILAHGMKYYPLVYG----- 282

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG---FRLPSCMDNRPL 513
            P T+F+YI  D  +   +    +   SG+          L E G     L   +   P 
Sbjct: 283 EPTTVFDYI--DGTVLFSDYSDVMDNASGVTTRHNEDVKILMEDGQLCKGLDGYIIELPQ 340

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
                       + +S                E+I     +    ++      +++ + +
Sbjct: 341 IQNIAEKHV--CLYMS----------SFVQGGERIDYRRLVSFEAMQTAPWSGEMKQLVE 388

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++     +G R++L   +++    + + L +  I                    + L K 
Sbjct: 389 DLTDFRNRGYRMILAAGSEKTLSIIQQDLNDDGIPC------------DIAGEGVELHKG 436

Query: 634 DVLVGINLLREGLDIPECGLVAI 656
            V++    L  G + PE   V I
Sbjct: 437 RVVLMSGSLAGGFEYPENKTVLI 459



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 8/174 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            +++SATP    L     GI    ++        PV+       +  +   I    ++G 
Sbjct: 763 VLMLSATPIPRTLNMAMSGIRDMSVLEEPPQDRYPVQTYVIEYNIGTIVQAIVRELRRGG 822

Query: 584 RILLT---VLTKRMAE-DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T +     L + L E  I   Y H ++   +  +I   L   + D+L+  
Sbjct: 823 QVYYIHNRVETIQACAAKLQQLLPEARI--AYAHGQMSEDQMSDIWEQLVEHEIDILICT 880

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++  G+D+P    + I D+D+ G L     L   +GR+ R   +      D +
Sbjct: 881 TIIETGVDVPNVNTLIIEDSDRFG-LSQLYQLRGRVGRSNRRGYAYFTYQRDKV 933


>gi|146306624|ref|YP_001187089.1| transcription-repair coupling factor [Pseudomonas mendocina ymp]
 gi|145574825|gb|ABP84357.1| transcription-repair coupling factor [Pseudomonas mendocina ymp]
          Length = 1145

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 120/323 (37%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+      R  +V+      A +L  E   F P   V +F          
Sbjct: 21  LPGAALSLAIAEAASNAGRFTLVLTEGSQSAERLQEELAFFAPDLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R +    L +     +VV   + ++ +          
Sbjct: 71  ---PDWETLPYDVFSPHQDIISQRIATLYRLPQLSRGILVVPIATALHRLAPKRFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ +++ + L    Y+  D     G F V G  I++FP   E V +R+ +F 
Sbjct: 128 LVLDVGQKLDVEQMRTRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSE-VPYRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P   + +  VE+I++     +                  K  + +    G
Sbjct: 187 DEIETLRTFDPENQRSVDKVESIRLLPAREFPLE---------------KKAVSDFR--G 229

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           R  E   ++ R     + L +  +   IE Y          E   TLF+Y+P D+ +F  
Sbjct: 230 RFRERFDVDFRRCPIYQDLSSGITPAGIEYYLPLFF-----EETGTLFDYLPGDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I + +  +  D  +R   
Sbjct: 283 -SLPGIEKAAEHFWTDARNRYED 304



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 9/113 (7%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L E + E  I V   H +++  E  +++ D    +F+VLV   ++  G+D+P    + I
Sbjct: 827 ELAELVPEARIGVG--HGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIII 884

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             ADK G  +    L Q  GR  R+ +           KS+    D+  +R E
Sbjct: 885 ERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPRKSMT---DDAQKRLE 930



 Score = 38.9 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 4/102 (3%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTF 183
               ++  + + D   F     +  + DQ AAI  +   + + +   +L+ G  G GKT 
Sbjct: 576 AREGFAFQDPALDYATFSAGFPFEETPDQQAAIDAVRADMLAGKPMDRLVCGDVGFGKTE 635

Query: 184 T---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
                A +     +   V+ P  +LA Q Y+ F++ F    V
Sbjct: 636 VAMRAAFIAVHSGKQVAVLVPTTLLAQQHYNSFRDRFADWPV 677


>gi|303231983|ref|ZP_07318691.1| transcription-repair coupling factor [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513412|gb|EFL55446.1| transcription-repair coupling factor [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 1096

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 111/277 (40%), Gaps = 22/277 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI-EAMQRPAIVMAPNKILAAQLYS 211
           Q  ++   LK    + K  ++ G++GS K+F +++ I E   +  I++  +K        
Sbjct: 11  QNPSMTDGLKAFRQKGK-SVIYGLSGSQKSFLLSRAIPEEQVQSIIIVVHDKEHKELWER 69

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +   F+P+  V  F            +     +     S+  Q  +MR  +  +   R  
Sbjct: 70  DLAFFWPNVQVLPFP-----------ITERVEFTTVARSLEGQGAQMRALSMLAW-NRPV 117

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            ++ +       + S +      V L++  S+E+ ELL  LVK  Y+R D    RG F V
Sbjct: 118 VVLATIEEATQYVVSPQYVISQSVHLEVSQSIERDELLEKLVKIGYERVDQVEQRGHFSV 177

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD  +IFP + +D   R+  FG++I+ +  F   T + I  V+   +           +
Sbjct: 178 RGDIFDIFPVNSDD-PIRMEFFGDEIDTMRHFSVDTQRSIEMVDAYTVTPFFLTSDDADS 236

Query: 392 LNTAMKY----IKEE---LKMRLIELEKEGRLLEAQR 421
              +       I +E   ++  L +  KE      Q 
Sbjct: 237 TLLSYAKDGLIIYDEPVRIQEALKKFLKEDATHRKQH 273



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 18/212 (8%)

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDVY 572
           +++EW       + +SATP    L      + E  +  T   D  PV+       +  + 
Sbjct: 689 KWKEWANNID-VLTLSATPIPRTLHMSLVGVREMSVISTPPEDRLPVQTYVVEYDMNLIA 747

Query: 573 DEINLAAQQGLRILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D I     +G ++   V  +      M E L + L +    V   H ++   +  EI+ D
Sbjct: 748 DAIKREIARGGQV-YFVYNRVASINHMGELLEQALPDLRYAVA--HGQMTGRQIEEIMTD 804

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G +DVL+  +++  GLDIP    + I DAD+ G  +    L Q  GR  R+      
Sbjct: 805 FYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQ----LYQMRGRVGRSRRRAYA 860

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
            +     K +  A +    +R K +E   +  
Sbjct: 861 YFMYRPDKMLSEAAE----KRLKAIEEFTELG 888


>gi|104782724|ref|YP_609222.1| transcription-repair coupling protein [Pseudomonas entomophila L48]
 gi|95111711|emb|CAK16435.1| transcription-repair coupling protein [Pseudomonas entomophila L48]
          Length = 1149

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 119/316 (37%), Gaps = 40/316 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+      R  +++  +   A +L  E + F P   V  F          
Sbjct: 21  LPGAALSLAIAEAASTAGRFTLLLTADSQAADRLEQELRFFAPELPVLPF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI-VVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E +  I VV   + ++ +          
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELDHGILVVPVTTALHRLAPTRFLLGGS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ +++ + L    Y+  D     G F V G  I+++P       +R+ +F 
Sbjct: 128 LVLDVGQKIDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLYPM-GSKQPYRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  V+++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKDEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +      IE Y          E   TLF+Y+P D+ +F  
Sbjct: 237 -------VDFRRSAIFQDLTSGIIPAGIEYYLPLFF-----EETATLFDYLPADTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD 490
            S   + Q +  +  D
Sbjct: 283 -SLPGVEQAAEHFWND 297



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 10/123 (8%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L E + E  I +   H +++  E  +++ D    +F+VL+   ++  G+D+P    + I
Sbjct: 830 ELAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIVI 887

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
             ADK G  +    L Q  GR  R+ +              +  I     +R + + + +
Sbjct: 888 ERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RQQISADAEKRLEAIANTQ 939

Query: 717 KHN 719
              
Sbjct: 940 DLG 942



 Score = 40.8 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 4/131 (3%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTF 183
             + ++  + + D   F     +  + DQ AAI  +   + + +   +L+ G  G GKT 
Sbjct: 579 ARKGYAFADPAADYATFSAGFPFEETPDQQAAIEAVRADMLAGQPMDRLVCGDVGFGKTE 638

Query: 184 T---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
                A +     R   V+ P  +LA Q Y+ F++ F    V   V        E     
Sbjct: 639 VAMRAAFIAVHSGRQVAVLVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVATAA 698

Query: 241 TDTYIEKESSI 251
            +    K   +
Sbjct: 699 AELAEGKIDIL 709


>gi|160944870|ref|ZP_02092097.1| hypothetical protein FAEPRAM212_02386 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444054|gb|EDP21058.1| hypothetical protein FAEPRAM212_02386 [Faecalibacterium prausnitzii
           M21/2]
          Length = 1171

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 90/514 (17%), Positives = 158/514 (30%), Gaps = 90/514 (17%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
               L G+  +G+    A + + + R   ++ P +  A     + K      AV      
Sbjct: 23  GPAALFGLPPAGRALLYAALQKDLGRVLCIVTPGEAEATHFADDLKALGLTAAV------ 76

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
                     P  D  +        + +  R S   +L       V      +       
Sbjct: 77  ---------FPPRDFMLRPVEGAGREYEYRRLSVLGALAGGRLQAVCVPAEALLQYTVPR 127

Query: 289 -SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             + Q  + LK G    ++ L++ L    Y R+      G F V GD ++I+   +   A
Sbjct: 128 AEFIQNTLTLKPGMVYNREALVARLFAAGYVRRSQVDGPGQFSVRGDIVDIYAPDMRQPA 187

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH--YVTPRPTLNTAMKYIKEELKM 405
            RV  + ++I+ +S F  LT ++   +E I +       + +   T       IK+    
Sbjct: 188 -RVEYWDDEIDSMSSFDLLTQRRDGALEKIYLSPAREVLFGSTAETAEALRSAIKKARGK 246

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
               LEK                DL  L++    ++++ Y      R P   P TL +++
Sbjct: 247 HRTALEKA------------TEADLSQLDSGLMPEAMDKYY---GIRYP--APATLLDHL 289

Query: 466 PEDSLLFV-DESHVTIPQISGMYRGDFHRKATLAEYGFRLPS--------------CMDN 510
             D+ LF+ DE                     L E G   P                  +
Sbjct: 290 --DAPLFILDEVGGIRDAQKATEFRRSEELTGLLEEGVLCPGLDVLYQTMDDLVIAAQSS 347

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             L  E +                 E +    I  E    P                +  
Sbjct: 348 STLLCENFLRGMN------------EFKLKDLINAEAFAAPN-----------WNGDLAS 384

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + ++++    QG  + L   T + A  LT  L ++   V              + RD+R 
Sbjct: 385 LREDLDPLIAQGYAVTLFAGTPKGAAALTRDLADKGYAVS-------------MSRDVRP 431

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            K  + V    L  G   P     A+L + + G 
Sbjct: 432 AKGILQVLPGHLTAGCTFP-FAHAAVLSSRRHGL 464



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 7/176 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI     I    +   PVE          + + +     +G 
Sbjct: 763 MLTLSATPIPRTLNMAMSGIRDLSTIEQPPIERQPVETFVLEYNDVILAEAMKKELARGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E    ++ +     R    H ++   E   + + L  G+ D+LV   L
Sbjct: 823 QVYYLHNRVDNIEACAAHVSQMVPGARVGIAHGKMTEEELNPVWQHLLNGEIDILVCTTL 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  G+D+  C  + I DAD+ G  +    L Q  GR  R+       +     K++
Sbjct: 883 IETGIDVRNCNTLIIEDADRMGLAQ----LYQIRGRVGRSGRKAYAYFTFRRDKTL 934


>gi|329767249|ref|ZP_08258776.1| transcription-repair coupling factor [Gemella haemolysans M341]
 gi|328836916|gb|EGF86563.1| transcription-repair coupling factor [Gemella haemolysans M341]
          Length = 1183

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 142/370 (38%), Gaps = 37/370 (10%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
              + K   + G   + +   +    +   +  +V++ +K  A +L++            
Sbjct: 14  FDKKNKNIGVYGQNLTTRALEIYNEYKNSGKTIVVLSQSKAEAEELFA------------ 61

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
                 + ++ E Y+      +++ +S +  + +       +L+     IV+  +  IY 
Sbjct: 62  ----ILNDFEGETYIYPEIDILKRHTSKSNDLVQNSIKVLENLVHNIQSIVIVPIEAIYR 117

Query: 284 -IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            + +   +     ++     +   EL   LV   Y+R +   + G F   G  ++IF   
Sbjct: 118 TVKNPSDFKNNSFEINEETVISFDELQKKLVNMGYRRVETVDVVGEFSKRGSIVDIFSPL 177

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E    R+  F ++++ +  F  LT + +  +++  IY  S +       +  ++ I  +
Sbjct: 178 SE-KPIRLDFFDDELDSMRTFDELTQRSLEKIDSGVIYPTSDFFLTSEEKDVVVERILTK 236

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLE---TTGSCQSIENYSRYLTGRNPGEPPP 459
           L           +L E +  ++  TY  E +E    TG    +E++S  +      E   
Sbjct: 237 LNDT--------KLREEENYQEISTYLQEKIEIYKATGDFSDLESFSNLVY-----ENTY 283

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519
           ++ +Y+ +D+++F D  H  + +I G+ R  F          +     +DN    FE+  
Sbjct: 284 SIADYLTDDTIIFYDNYHKILEKIEGL-REYFLTSLQEMNRNYIYQDVIDNVA--FEKIQ 340

Query: 520 CLRPTTIVVS 529
            L      +S
Sbjct: 341 NLDVRKFYLS 350



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 15/189 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI    +I        P++          + + +     +G 
Sbjct: 757 VLTLSATPIPRTLHMSLIGIRDLSVIETPPRERQPIQTFVTAQNKMVIKEAVMNEINRGG 816

Query: 584 RILLTVLTKRMAEDLTEYLYER----NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          ++  +YL  +    +I + Y H  +   E   I+ D+   K+D+L+  
Sbjct: 817 QVFYVYNRVETIDE--KYLELKRLLPDINIAYAHGRMSQRELENIMSDVIDRKYDMLIST 874

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + + DAD+ G  +    L Q  GR  R+             KS   
Sbjct: 875 TIIETGIDISNVNTLIVEDADRFGLSQ----LYQLRGRVGRSSREAYAYLMYEPFKS--- 927

Query: 700 AIDETTRRR 708
            + E + +R
Sbjct: 928 -LTENSEKR 935


>gi|160898289|ref|YP_001563871.1| transcription-repair coupling factor [Delftia acidovorans SPH-1]
 gi|160363873|gb|ABX35486.1| transcription-repair coupling factor [Delftia acidovorans SPH-1]
          Length = 1164

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/435 (16%), Positives = 152/435 (34%), Gaps = 50/435 (11%)

Query: 178 GSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           GS     +A++ E      R   ++  +   A +L  E   F P      F  + +    
Sbjct: 19  GSADALLLARLGEREKAAGRVTAIVTADASDAQRLIDEMAFFAPGLRCALFPDW-ETLPY 77

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           +++ P  D   E+ +++  +I++      R      D ++V + + +Y +      +   
Sbjct: 78  DSFSPHQDLISERLATL-WRINQ------RDKEHGADVVLVPATTALYRLAPPSFLAGYT 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
            + K G  +++ +L + L    Y+     +  G + V G  I++FP       +RV +F 
Sbjct: 131 FEFKSGQKLDEAKLKAQLTLAGYQHVSQVVSHGEYAVRGGLIDLFPM-GSLQPYRVDLFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P T + +  V  +++     +                    R     +  
Sbjct: 190 DEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDED--------------ARAKFRHRWR 235

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
            LLE      RI  D   +    +   IE Y          +   T+F+Y+  D+ + + 
Sbjct: 236 ELLEGDPTRSRIYKD---MGQGIATAGIEYYLPLFF-----DETATVFDYLGADATVVM- 286

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPS-CMDNRPLRFEEWNCLRPTTIVVSATPG 533
             H  +      +  D   +  L +     P+   +   L  +++         ++  PG
Sbjct: 287 --HGDLEPAFQRFWQDTKERFRLVQGDPERPALAPEVLFLSADQFYTRAKEHAQLALRPG 344

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
           + ++                 ++    +R A   +  +   I  +A    RILL   +  
Sbjct: 345 TEDVADSAIFQK---------LEDLSVVRGAEDPLARLQRHIATSA---HRILLLAESDG 392

Query: 594 MAEDLTEYLYERNIR 608
             E L ++     + 
Sbjct: 393 RRESLLDFFRASGVN 407



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 11/118 (9%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L E L E  I V   H ++   E   ++RD    ++++L+   ++  G+D+P    + I 
Sbjct: 839 LEEILPEARIAVA--HGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPSSNTILIS 896

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE--KQLE 713
            ADK G  +    L Q  GR  R+ +            S+     +  +R E  +Q+E
Sbjct: 897 RADKFGLAQ----LHQLRGRVGRSHHQAYAYLMVPDLDSLTK---QAQQRLEAIQQME 947


>gi|325846766|ref|ZP_08169681.1| transcription-repair coupling factor [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481524|gb|EGC84565.1| transcription-repair coupling factor [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 1163

 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 70/463 (15%), Positives = 172/463 (37%), Gaps = 45/463 (9%)

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
              L G+T   K    + + +   +  +++  N+  A  +  +  +    +   YF S  
Sbjct: 26  PVFLHGLTDQSKAHIFSTIFKYTDKTIVIICENEKKAQVMCEDINSIV-EDKCMYFPSTE 84

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVE 288
             Y           Y  K    N QI R+       ++  ++ I+ +S+  +   +   +
Sbjct: 85  INY-----------YNIKNLEKNNQISRL--EVLSRIIGNDNFIITTSLDALRNKLTPKK 131

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            + +   ++ I + ++ KE+ +S ++  Y    +   +G F + G  I+ +P   E+   
Sbjct: 132 IFKEKSFKIDIDNEIDIKEIKNSFLELNYDFTKLVESKGEFSIRGSIIDFWPIEYEN-PI 190

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+ +F  +I+ I  F   + + + N++ I +      +  +     ++K I +++     
Sbjct: 191 RIELFDTEIDSIRFFDKDSQRSLENIDEILVRPTKELIYEKSDYEKSIKLIDKDIDSLSD 250

Query: 409 ELEKEGRLLEAQRLEQRITYDLEML----ETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            L   G      +  Q ++Y  + L    +   S    +N+  +              +Y
Sbjct: 251 NL---GMSKLKDKYSQIVSYLKDSLYISNDDLISPYRADNFDDFF-------------DY 294

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           I +DS+   ++ + +I   + +        A   + G    +  + +    E +  ++  
Sbjct: 295 IKKDSIFVFEDLNRSIDNFNDIMDKFNLDLANQMDNGEVFSTFKNIKINIDEIYKHIKSY 354

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            I+ SA+     L+    I  ++II         +E  +    + +  D I    +   +
Sbjct: 355 PIINSASL----LKNNNFIRAKKIIE-----LKSIEQENFNRNISNFVDNIKTVIKNNEK 405

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
             +    K+  E++ E   E  I    +  E++  +    + D
Sbjct: 406 AYIFASDKKSLENIKEIFDENEIVNYSLDFEIEDDKNNVYLSD 448



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 73/199 (36%), Gaps = 25/199 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVEDVYDEINLAAQQGL 583
            + +SATP    L+          IR    +D P E R    T V +    I   A +  
Sbjct: 771 VLTLSATPIPRTLQMSLTG-----IRDMSTLDEPPERRQPVNTYVLEYDFSIIKRAIEKE 825

Query: 584 R----ILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  V  +     ++   L   + +  I +   H ++      +I+ D   G+ D
Sbjct: 826 LDRDGQVYFVYNRVYNIDKIYNHLKLLVPDAKIEIA--HGQMSAKSLEKIMEDFVSGEID 883

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  G+DI     + + D+D  G  +    L Q  GR  R+  S    +     
Sbjct: 884 ILLATTIIETGMDIQNVNTIIVYDSDMMGLSQ----LYQLKGRIGRSSRSSYAYFTY--- 936

Query: 695 KSIQLAIDETTRRREKQLE 713
            +    + E   +R K ++
Sbjct: 937 -AKGKVLTEIGEKRLKSIK 954



 Score = 41.6 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 16/149 (10%)

Query: 531 TPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSAR---------TQVEDVYDEINLAA 579
           TP   E E          Q+     + D   +I+             + E        A 
Sbjct: 607 TPWQKEFEDSFIYEETDSQLRSIDEIKDDMEDIKPMDRLLCGDVGYGKTEVALRAAFKAV 666

Query: 580 QQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             G ++   V T    ++  + + E   +  I    +   V   ++ + I +L+ GK D+
Sbjct: 667 MDGYQVCFLVPTTILARQHFKTMQERFKDFPIDCAMLSRFVSKKDQEKYIHNLKSGKIDI 726

Query: 636 LVGIN-LLREGLDIPECGLVAILDADKEG 663
           +VG + LL + +   + GL+ I +  + G
Sbjct: 727 IVGTHRLLSKDIKFKKLGLLIIDEEQRFG 755


>gi|81300135|ref|YP_400343.1| transcription-repair coupling factor [Synechococcus elongatus PCC
           7942]
 gi|81169016|gb|ABB57356.1| transcription-repair coupling factor [Synechococcus elongatus PCC
           7942]
          Length = 1153

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 79/508 (15%), Positives = 164/508 (32%), Gaps = 70/508 (13%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             LL  +  +  ++L+ G     +    + +++A  R  +V+      A +  ++ +   
Sbjct: 17  QDLLTKLEKQSGLRLI-GAGRLAQGLVTSALVQAQSRSLLVICATLEEAGRWAAQLEGMG 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
                 Y  S    Y  EA+ P ++    +   + + +++           +   IV + 
Sbjct: 76  WPTLHFYPTSESSPY--EAFDPESELVWGQLQVLADLLEQ----------SQPVAIVATE 123

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            S    +  VE+       L+ G  V   EL     +  Y+R D     G +   GD I+
Sbjct: 124 RSLQPHLPPVEALRPFCQTLQRGQEVNLGELADRFAQFGYERVDTVETEGQWSRRGDIID 183

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           +FP   E +  R+ +FG+++E + EF P T + +  +E +++   S+             
Sbjct: 184 LFPVSAE-LPVRLELFGDELERLREFDPATQRSLDEIEVLRLTPTSYASV---------- 232

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            I   L  R          L           + E  +     + +  +          E 
Sbjct: 233 -IAAALADR-----SLDDWL--------TEAEQEAWQEGQPPEGMRRFL-----GVAFER 273

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
             +L +Y+P  +++ +DE                      A+     P+   +    +E 
Sbjct: 274 SASLLDYLPAGTVIAIDEPLQCRAHSDRWIEHVQDHWQEQAQ---VWPAIHRDFQAAWE- 329

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
                   I +S    S         +    +    L   P        Q   + D I  
Sbjct: 330 -EIRCFQRIELSQLNSS-----SDSELPVLDLAARSLPVLP-------HQFGKLADFI-- 374

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             ++    +  V  +     +   L E +   +++ +          I  L   +  + +
Sbjct: 375 RTERDRHSIWLVSAQ--PSRMVALLQEHDCPSQFIPNPRDYP----AIDRLSEKRVPIAL 428

Query: 638 GINLLR--EGLDIPECGLVAILDADKEG 663
             + L   EG  +P   L  I D +  G
Sbjct: 429 KHSGLAELEGFSLPTFRLTLITDRECFG 456



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 70/197 (35%), Gaps = 21/197 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E V   I+   
Sbjct: 755 VLTLSATPIPRTLYMALSGVREMSLITT----PPPSRRPIKTHLMPYDLEAVRTAISQEI 810

Query: 580 QQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +G ++   V      E     L E L    I V   H ++   E    +      + DV
Sbjct: 811 DRGGQVFYVVPRVEGIEAIATRLQEMLPSLRIAVA--HGQMPEGELEATMLAFNNNEADV 868

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           ++   ++  GLDIP    + I DA + G L     L   +GRA    ++ +    +T+  
Sbjct: 869 MICTTIIESGLDIPRVNTILIEDAQRFG-LSQLYQLRGRVGRAGIQAHAWLFYPGETVLS 927

Query: 696 SIQLAIDETTRRREKQL 712
                     R R  Q 
Sbjct: 928 DQAR-----QRLRAIQE 939



 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI-NLLREGL 646
           T+LT++    L E      I++  ++      ER  I + L  G+ DV+VG   LL +G 
Sbjct: 663 TILTQQHYHTLKERFAPYPIQIGLLNRFRTASERQNIQQRLATGELDVVVGTHQLLSKGT 722

Query: 647 DIPECGLVAILDADKEG 663
              + GL+ + +  + G
Sbjct: 723 QFRDLGLLVVDEEQRFG 739


>gi|308271395|emb|CBX28003.1| hypothetical protein N47_G33270 [uncultured Desulfobacterium sp.]
          Length = 1171

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 94/540 (17%), Positives = 193/540 (35%), Gaps = 58/540 (10%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           LLK    +E+     G++GS K +   ++    + P +V+ P+   +A   ++   FF  
Sbjct: 14  LLKSFSEKEQGIDFEGLSGSKKAYIAFRLYIKHKLPTLVIVPSVKESADFVNDLNYFFNG 73

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSV 278
             +           P    P+ +    K  S + +I   R     +++  +   I+V++ 
Sbjct: 74  QNI-----------PVMIFPQYN-VSSKSVSYHNEIASDRIRTLYKAIESQIPPIIVTTP 121

Query: 279 SCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             + G +            +  G+ +E+   ++ LV   Y R  I    G + + G  I+
Sbjct: 122 GALAGRLIPKNELLNFSELIAEGEEIERDRFIAKLVAGGYCRTAIVEEPGDYCIRGGIID 181

Query: 338 IF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           IF P + +    R+ +  + IE I  F   + + ++ V    I      +     LN  +
Sbjct: 182 IFTPLYPD--PLRIDLSDDFIESIRFFSAASQRSLKPVHEAIILPAKEAIIKANDLNYIV 239

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
            +I+ EL   L     + R +  +   + +  ++E L                       
Sbjct: 240 SHIR-ELASGLNIPVTKVRTIIDKIKNEGVLPEIEGLNCLVY-----------------S 281

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF- 515
            P + F+YIP++S++ +DE          ++  +     +LA    RL    +   L + 
Sbjct: 282 KPDSFFDYIPKNSIIIMDEPEQLKETTEKLFDKEQKDY-SLARDEQRLSINPEKIYLSWN 340

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQ--GIIVEQIIRPTGLVDPPVEIR-SARTQVEDVY 572
           E +  +   T     + G + +++ +   I     I+   LV   ++ R      +  + 
Sbjct: 341 EIFKIINEKTYYSFRSIGFFSIDEHKRCSIKCSDFIKSNDLVIQDLKNRIKKENYLLPLA 400

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG- 631
             I+         L+   T   AE +   L    I             RI+    + LG 
Sbjct: 401 QWIDDKINLRCVTLIVCSTMSQAERIKSLLLPYGIT-----------PRIKENYTMSLGI 449

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           K +  + +  +  G    E  +  I + +  G             ++AR   S +I + D
Sbjct: 450 KGETYICLGRISSGFVYLEESMAIITEDEIFGAKHHVQK------QSARRPASMIIAFED 503



 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +  + K +A  L E + E  I +   H  +   E   ++        D+LV   ++  GL
Sbjct: 846 IFTIDK-IANKLHELIPEIKIGIG--HGRLSENELESVMLKFVNKDIDMLVCTTIIESGL 902

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           DIP    + I  AD+ G  +      Q  GR  R+               +     +  +
Sbjct: 903 DIPSANTIIINRADRFGLAQIY----QLRGRVGRSDEQAYAYLFIPKDSILGK---DAQK 955

Query: 707 RREKQLEH 714
           R +  +EH
Sbjct: 956 RLKVLMEH 963


>gi|56750236|ref|YP_170937.1| transcription-repair coupling factor [Synechococcus elongatus PCC
           6301]
 gi|56685195|dbj|BAD78417.1| transcription-repair coupling factor [Synechococcus elongatus PCC
           6301]
          Length = 1153

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 79/508 (15%), Positives = 164/508 (32%), Gaps = 70/508 (13%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             LL  +  +  ++L+ G     +    + +++A  R  +V+      A +  ++ +   
Sbjct: 17  QDLLTKLEKQSGLRLI-GAGRLAQGLVTSALVQAQSRSLLVICATLEEAGRWAAQLEGMG 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
                 Y  S    Y  EA+ P ++    +   + + +++           +   IV + 
Sbjct: 76  WPTLHFYPTSESSPY--EAFDPESELVWGQLQVLADLLEQ----------SQPVAIVATE 123

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            S    +  VE+       L+ G  V   EL     +  Y+R D     G +   GD I+
Sbjct: 124 RSLQPHLPPVEALRPFCQTLQRGQEVNLGELADRFAQFGYERVDTVETEGQWSRRGDIID 183

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           +FP   E +  R+ +FG+++E + EF P T + +  +E +++   S+             
Sbjct: 184 LFPVSAE-LPVRLELFGDELERLREFDPATQRSLDEIEVLRLTPTSYASV---------- 232

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            I   L  R          L           + E  +     + +  +          E 
Sbjct: 233 -IAAALADR-----SLDDWL--------TEAEQEAWQEGQPPEGMRRFL-----GVAFER 273

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
             +L +Y+P  +++ +DE                      A+     P+   +    +E 
Sbjct: 274 SASLLDYLPAGTVIAIDEPLQCRAHSDRWIEHVQDHWQEQAQ---VWPAIHRDFQAAWE- 329

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
                   I +S    S         +    +    L   P        Q   + D I  
Sbjct: 330 -EIRCFQRIELSQLNSS-----SDSELPVLDLAARSLPVLP-------HQFGKLADFI-- 374

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             ++    +  V  +     +   L E +   +++ +          I  L   +  + +
Sbjct: 375 RTERDRHSIWLVSAQ--PSRMVALLQEHDCPSQFIPNPRDYP----AIDRLSEKRVPIAL 428

Query: 638 GINLLR--EGLDIPECGLVAILDADKEG 663
             + L   EG  +P   L  I D +  G
Sbjct: 429 KHSGLAELEGFSLPTFRLTLITDRECFG 456



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 70/197 (35%), Gaps = 21/197 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E V   I+   
Sbjct: 755 VLTLSATPIPRTLYMALSGVREMSLITT----PPPSRRPIKTHLMPYDLEAVRTAISQEI 810

Query: 580 QQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +G ++   V      E     L E L    I V   H ++   E    +      + DV
Sbjct: 811 DRGGQVFYVVPRVEGIEAIATRLQEMLPSLRIAVA--HGQMPEGELEATMLAFNNNEADV 868

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           ++   ++  GLDIP    + I DA + G L     L   +GRA    ++ +    +T+  
Sbjct: 869 MICTTIIESGLDIPRVNTILIEDAQRFG-LSQLYQLRGRVGRAGIQAHAWLFYPGETVLS 927

Query: 696 SIQLAIDETTRRREKQL 712
                     R R  Q 
Sbjct: 928 DQAR-----QRLRAIQE 939



 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI-NLLREGL 646
           T+LT++    L E      I++  ++      ER  I + L  G+ DV+VG   LL +G 
Sbjct: 663 TILTQQHYHTLKERFAPYPIQIGLLNRFRTASERQNIQQRLATGELDVVVGTQQLLSKGT 722

Query: 647 DIPECGLVAILDADKEG 663
              + GL+ + +  + G
Sbjct: 723 QFRDLGLLVVDEEQRFG 739


>gi|294813058|ref|ZP_06771701.1| Transcriptional-repair coupling factor [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325657|gb|EFG07300.1| Transcriptional-repair coupling factor [Streptomyces clavuligerus
           ATCC 27064]
          Length = 1206

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 82/519 (15%), Positives = 156/519 (30%), Gaps = 67/519 (12%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+A+ ++      +  + L    + + F +A +     RP + +      A  L +  +
Sbjct: 44  PALAEAVEAARGGTRTHVDLVGPPAARPFAVAALAREAGRPVLAVTATGREAEDLAAALR 103

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +  P   V  + ++ +    E   PR+DT   + +     + R+ H A          +V
Sbjct: 104 SLLPEEGVAEYPAW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPAADDPAAGPVSVV 158

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           V+ +  +           + V L+ G   +  E++ +L    Y R ++   RG F V G 
Sbjct: 159 VAPIRSVLQPQVKGLGELVPVALRTGQQADLDEVVDALAAAAYSRVELVEKRGEFAVRGG 218

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTPRPTLN 393
            +++FP   E+   RV  +G+DIEEI  F     + +   E  +        +       
Sbjct: 219 ILDVFPP-TEEHPLRVEFWGDDIEEIRYFKIADQRSLEVAEHGLWAPPCRELLLTDEVRR 277

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A      EL     EL +                 L  +    + + +E+ +  L    
Sbjct: 278 RA-----AELAEAHPELGE----------------LLGKISEGIAVEGMESLAPVLVDEM 316

Query: 454 PGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYGFRLP---SC 507
                  L + +P  S+  V +          +    +            G   P     
Sbjct: 317 EL-----LLDVLPTGSMAVVCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGA 371

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
              R +            +  S +P + + E  +  +   +  P           S R  
Sbjct: 372 ASLRSIADVRDRARELGMMWWSVSPFAADEEGGRDTLTLGLNAP----------ESYRGD 421

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
                 +       G R +        A    E L    +  R                D
Sbjct: 422 TARALADTKGWLADGWRTVFVTEAHGPAARTVEVLSGEGVPARL---------------D 466

Query: 628 LRLGKF---DVLVGINLLREGLDIPECGLVAILDADKEG 663
              G+     V V    +  G   P   L  + + D  G
Sbjct: 467 AGTGEIPAAVVQVVCGSIDYGFTAPGLRLAVLTETDLSG 505



 Score = 39.3 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 65/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + +  PP E     T V     + +   I    
Sbjct: 807 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEEKQIGAAIRREL 862

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 863 LREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSESVLEQVVVDFWEKKFDVLV 922

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R        +     K  
Sbjct: 923 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRERGYAYFLYPPEKP- 977

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 978 ---LTETAHERLATIAQHTEMG 996


>gi|257783934|ref|YP_003179151.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469]
 gi|257472441|gb|ACV50560.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469]
          Length = 1147

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 63/340 (18%), Positives = 123/340 (36%), Gaps = 39/340 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + +L + +       L   ++ S +   +A +     RP +++   +  A +       +
Sbjct: 16  LEKLKRELSCGSDATL--SLSQSARPLMLAALWSQNPRPCLLVVAGEDAADRTARSLAAW 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
             ++AV  + +  D             Y   +++ ++ I   R  A   L      IVV+
Sbjct: 74  LGNDAVLRYPNRKD-------------YPWSDATPDDAIIGARCRAIAKLSAGEKVIVVA 120

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           S   +   +  V S   +     +GD V  +++ S LV   Y         GTF + GD+
Sbjct: 121 SAHALMRRVPPVGSGYFLPATFTVGDDVPFEDVASLLVGMGYADTGEVDAPGTFHIHGDT 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++IFP+       R+  FG++I+ I      TGQ I  ++ + +         +  +  A
Sbjct: 181 VDIFPAQATS-PVRIEFFGDEIDRIRRMVAATGQTIGAIDEVTVAPARELAFTKEAIRRA 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
               +E L  R  E                I  DLE+++      ++E Y   L G    
Sbjct: 240 ----EEALYTRAQENSA-------------IAADLELIQRGAQAPALERYLPVLYGGT-- 280

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
               +  E+I  ++L+ + E           +       A
Sbjct: 281 ---ASPLEHISSETLVVLAEPRSLFDDCQRAFDEISSSAA 317



 Score = 45.1 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 66/196 (33%), Gaps = 11/196 (5%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E+   +R     + +SATP    ++    G+    +I        PV++       + V 
Sbjct: 747 EQLKNMREQVDVLTLSATPIPRTMQMAMSGVRDMSLILTPPPGRKPVQVTVGEYNPDLVS 806

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRL 630
             I    ++  ++          ++    + E     R    H ++   E   ++   + 
Sbjct: 807 AAIRSELEREGQVYYVSNRVTTIDEAVARVEEAAPEARVGVAHGQMSAREVENVMLAFQE 866

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            + DVLV   ++  G+D      + I D+ + G  +    L Q  GR  R        + 
Sbjct: 867 HEIDVLVATTIIESGIDNSHTNTLIIEDSQRLGLAQ----LYQLKGRVGRGRQQAYAYFM 922

Query: 691 DTITKSIQLAIDETTR 706
                 +    + T R
Sbjct: 923 FPAELPLTE--EATER 936


>gi|307822340|ref|ZP_07652572.1| transcription-repair coupling factor [Methylobacter tundripaludum
           SV96]
 gi|307736906|gb|EFO07751.1| transcription-repair coupling factor [Methylobacter tundripaludum
           SV96]
          Length = 1155

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 56/337 (16%), Positives = 112/337 (33%), Gaps = 39/337 (11%)

Query: 164 IHSREKVQLL-LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I  ++   L+  G+TG G +  +A  I+   R  +++  +   A +L  E   F      
Sbjct: 11  IPQKQDQSLIWTGLTGCGDSLALASAIKNEDRLFVMITRDNQTALRLEHELSFFLQGEH- 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCI 281
                      P    P  +T      S   +I   R      L + +   +VVS  + +
Sbjct: 70  -----------PILNFPDWETLPYDVFSPLPEIISERLKTLALLPQVKRGALVVSVTTLM 118

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
           + +   E        +K+GD    +     L    Y         G F V G  +++FP 
Sbjct: 119 HRLAPREHVLANSFAVKVGDDFNLELNRIKLESVGYHCVSQVYQHGEFAVRGSIVDLFPM 178

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
                 +R+ +F  +IE I  F P T + +  ++ I+++    +      +    +  ++
Sbjct: 179 -GSKAPYRIELFDEEIESIRTFDPETQRSLEKIDRIQLFPAREFPFTDEAIKHFRQAFRD 237

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
                  +                  +    +    +   IE Y      +       +L
Sbjct: 238 AFPETSPK-----------------NHFYMDVSKGITPGGIEYYLPLFVDQM-----ASL 275

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDF--HRKAT 496
           F+Y+P+ ++L   ++     Q       D    RK  
Sbjct: 276 FDYLPKSAVLVTADTFDATAQAFYAEAEDRFQQRKYD 312



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 11/184 (5%)

Query: 516 EEWNCLRPT--TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--V 571
           E +  LR     + ++ATP    L      + +  I  +   +    I++  +Q  D  +
Sbjct: 745 EHFKKLRNELDMLTLTATPIPRTLNMAMSGLRDISIIASPPPNRHA-IKTFISQWIDAQI 803

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLR 629
            +      ++G ++       +  E +   L       R    H ++   E   I+ D  
Sbjct: 804 REACLREIKRGGQVFFLHNDVKSMEKMARELEALVPEARIEIAHGQMPERELERIMLDFY 863

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
             +F++L+   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +     +
Sbjct: 864 HQRFNLLLCSTIIESGIDIPSANTIIINRADKLGLAQ----LHQLRGRVGRSHHRAYAYF 919

Query: 690 ADTI 693
               
Sbjct: 920 VVPP 923



 Score = 41.6 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 11/141 (7%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q G ++ + V T    ++  ++  +   +  +RV  +   V   ++
Sbjct: 638 GKTEVSMRAAFIAVQNGKQVAVLVPTTLLAQQHYQNFRDRFADWPVRVEVLSRFVSPKQQ 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            EI  DL  GK D+++G + LL + +     GLV I +  + G  + +        +  R
Sbjct: 698 KEITDDLEQGKVDIVIGTHKLLSKEIKYKALGLVVIDEEHRFGVTQKEHF------KKLR 751

Query: 681 NVNSKVILYADTITKSIQLAI 701
           N    + L A  I +++ +A+
Sbjct: 752 NELDMLTLTATPIPRTLNMAM 772



 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            +  + DQ  AI  +L+ + S     +++ G  G GKT      A +     +   V+ P
Sbjct: 603 PFEETPDQQTAIEAILEDMASPHPMDRVICGDVGFGKTEVSMRAAFIAVQNGKQVAVLVP 662

Query: 202 NKILAAQLYSEFKNFFPHNAV 222
             +LA Q Y  F++ F    V
Sbjct: 663 TTLLAQQHYQNFRDRFADWPV 683


>gi|113970068|ref|YP_733861.1| transcription-repair coupling factor [Shewanella sp. MR-4]
 gi|113884752|gb|ABI38804.1| transcription-repair coupling factor [Shewanella sp. MR-4]
          Length = 1160

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 167/444 (37%), Gaps = 54/444 (12%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           + +  ++Q L  + G G+  T+A ++   +   +++  +   A  +  E       +A++
Sbjct: 12  VKNGTQMQTLSCLAGVGQAVTLASLVRQHKGTTLIVTSDTPTALSIELELNYLLAKSAIK 71

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIY 282
                          P  +T      S ++ +   R      + +    +V+  V+  + 
Sbjct: 72  -----------VRLFPDRETLPYDSFSPHQDLISQRLETLSQITQAEHSVVIVPVTTLMM 120

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +      S  +  LK GD  +  ++   L    Y   +     G F + G  ++IFP+ 
Sbjct: 121 RLPPKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTG 180

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
           + ++  R+ +F +++E I  F P T +    V+ +++     +    PT ++A++  ++ 
Sbjct: 181 V-NMPLRIELFDDEVETIRHFDPETQRSSTPVDAVRLLPAKEF----PTDSSAIEGFRQR 235

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            + R   + K     E + + Q ++ +L           IENY          +   TLF
Sbjct: 236 YRRRFEVIVK-----EPESVYQLVSRNL-------MPAGIENYLPLFF-----DEVATLF 278

Query: 463 EYIPEDSLLF----VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           +Y+P+D+ L     +++S     Q       D  R   L      L +  +   L  E +
Sbjct: 279 DYLPKDTQLVTLGDIEKSARAHLQEVETRYEDR-RVDPLRP----LLAPKELYLLIEELF 333

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
              +P        P           +V   ++    V P V   SA  +++     +   
Sbjct: 334 AAFKPLPRYQFIAPQP--------DVVAGAVQIDASVLPEV---SANHKLKQPLIALQDY 382

Query: 579 AQQGLRILLTVLTKRMAEDLTEYL 602
           A+   R+L +  ++   E L E L
Sbjct: 383 AEHAPRMLFSAESEGRREALLELL 406



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+     +    V + I     +G 
Sbjct: 761 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGG 820

Query: 584 RILLT---VLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T     +D++  L E  + V   H +++  +   ++ D    +F+VLV  
Sbjct: 821 QVYYLHNNVETIEKCAQDISTLLPEARVVVA--HGQMRERDLERVMSDFYHQRFNVLVCT 878

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +
Sbjct: 879 TIIETGIDVPSANTIIIERADTFGLAQ----LHQLRGRVGRSHHQAYAYLMTPHPKRM 932


>gi|256822363|ref|YP_003146326.1| transcription-repair coupling factor [Kangiella koreensis DSM
           16069]
 gi|256795902|gb|ACV26558.1| transcription-repair coupling factor [Kangiella koreensis DSM
           16069]
          Length = 1140

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 76/484 (15%), Positives = 165/484 (34%), Gaps = 63/484 (13%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G+ GS +    AK+ E  ++P +V++ +     QL  E + F   ++           
Sbjct: 18  LDGLAGSSRALAFAKLAETREQPIVVISDDTPALWQLQKEIRYFLGKDSDI--------- 68

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV-VSSVSCIYGIGSVESYS 291
            P    P  +T      S ++ I   R      L      IV ++  + +  +   +   
Sbjct: 69  -PVLVFPDWETLPYDNFSPHQDIVSERLLTLYKLPRLKHGIVLIAVNTLLQRLPPQQYIE 127

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q  + +  G  ++  E+     +  Y   +     G + V G  +++FP   E    R+ 
Sbjct: 128 QNSLIVHTGQKLDMHEVRRLFEESGYHAVNQVFSHGEYAVRGSILDVFPMGSE-QPLRLD 186

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            F ++I+ I  F P +      +   ++     +      + +  +  + E ++ L    
Sbjct: 187 FFDDEIDSIRYFDPESQLSDEKINKFELLPAKEFPLDEEGVGSFRQNFRAEFEVNL---- 242

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                   QR+        + +    S   IE Y          E   T F+Y+P+ SL+
Sbjct: 243 --------QRVW-----LYQEVSNGNSPAGIEYYLPLFF-----EKLDTFFDYLPQQSLI 284

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
                H    +    +     R      +    P               + P  + ++A 
Sbjct: 285 CTLGDHQLHAEH--YWDEITERYEQR-RHDIERP--------------IIEPHKLYLAAD 327

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ-GLRILLTVL 590
             + EL+Q   + ++Q          P+ + +   + +D  ++     QQ   +  +   
Sbjct: 328 ELNSELKQHIRVHIKQERPDAEYQASPMPMMAIDHKAKDPVNQFRGFLQQWAGQCFIATE 387

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           +    E L + L   +I+     S ++        + L       ++G+  L +G  + +
Sbjct: 388 SPGRREALKDLLARNDIQS----SVIEQWHEASDAKGL-------VIGVAPLSKGFALSD 436

Query: 651 CGLV 654
             +V
Sbjct: 437 LAVV 440



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 15/187 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+          + + I     +G 
Sbjct: 748 ILTLTATPIPRTLNMSMSGMRDLSIIATPPARRLSVKTFVREYHKPLIREAILREVLRGG 807

Query: 584 RI--LLTVLT--KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++  L   +   +R  E+L E L E  I++   H +++  E  +++RD    +F+VLV  
Sbjct: 808 QVYFLHNAVDTIQRTVEELQELLPEARIQLA--HGQMRERELEQVMRDFYHQRFNVLVCT 865

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT----ITK 695
            ++  G+D P    + I  ADK G  +    L Q  GR  R+ +             ITK
Sbjct: 866 TIVETGIDNPNANTMIIDRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPAGRKITK 921

Query: 696 SIQLAID 702
             +  +D
Sbjct: 922 DAEKRLD 928


>gi|212696152|ref|ZP_03304280.1| hypothetical protein ANHYDRO_00688 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676781|gb|EEB36388.1| hypothetical protein ANHYDRO_00688 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 1163

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 69/463 (14%), Positives = 172/463 (37%), Gaps = 45/463 (9%)

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
              L G+T   K    + + +   +  +++  N+  A  +  +  +    +   YF S  
Sbjct: 26  PVFLHGLTDQSKAHIFSTIFKYTNKTIVIICENEKKAQVMCEDINSIV-EDKCMYFPSTE 84

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVE 288
             Y           Y  K    N QI  +R      ++  ++ I+ +S+  +   +   +
Sbjct: 85  INY-----------YNIKNLEKNNQI--LRLEVLSRIIGDDNFIITTSLDALRNKLTQKK 131

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            + +   ++ I + ++ KE+ +S ++  Y    +   +G F + G  I+ +P   E+   
Sbjct: 132 IFEEKSFKIDIDNEIDIKEIKNSFIELNYDFTKLVESKGEFSIRGSIIDFWPIEYEN-PI 190

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+ +F  +I+ I  F   + + + N++ I +      +  +     ++K I +++     
Sbjct: 191 RIELFDTEIDSIRFFDKDSQRSLENIDEILVRPTKELIYEKSDYEKSIKLINKDIDSLSD 250

Query: 409 ELEKEGRLLEAQRLEQRITYDLEML----ETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            L   G      +  Q ++Y  + L    +   S    +N+  +              +Y
Sbjct: 251 NL---GMSKLKDKYSQIVSYLKDSLYISNDDLISPYRADNFDDFF-------------DY 294

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           I +DS+   ++ + +I   + +        A   + G    +  + +    E +  ++  
Sbjct: 295 IKKDSIFVFEDLNRSIDNFNDIMDKFNLDLANQMDNGEVFSTFKNIKINIDEVYKNIKSY 354

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            I+ SA+     L+    I  ++II         +E  +    + +  D I    +   +
Sbjct: 355 PIINSASL----LKNNNFIRAKKIIE-----LKSIEQENFNRNISNFVDNIKTLIKNNEK 405

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
             +    K+  E++ E   E  I    +  +++  +    + D
Sbjct: 406 AYIFASDKKSLENIKEIFDENEIVNYSLDFDIEDDKNNVYLSD 448



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 73/199 (36%), Gaps = 25/199 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVEDVYDEINLAAQQGL 583
            + +SATP    L+          IR    +D P E R    T V +    I   A +  
Sbjct: 771 VLTLSATPIPRTLQMSLTG-----IRDMSTLDEPPERRQPVNTYVLEYDFSIIKRAIEKE 825

Query: 584 R----ILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  V  +     ++   L   + +  I +   H ++      +I+ D   G+ D
Sbjct: 826 LDRDGQVYFVYNRVYNIDKIYNHLKLLVPDAKIEIA--HGQMSAKSLEKIMEDFVSGEID 883

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  G+DI     + + D+D  G  +    L Q  GR  R+  S    +     
Sbjct: 884 ILLATTIIETGMDIQNVNTIIVYDSDMMGLSQ----LYQLKGRIGRSSRSSYAYFTY--- 936

Query: 695 KSIQLAIDETTRRREKQLE 713
            +    + E   +R K ++
Sbjct: 937 -AKGKVLTEIGEKRLKSIK 954



 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 16/149 (10%)

Query: 531 TPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSAR---------TQVEDVYDEINLAA 579
           TP   E E          Q+     + +   +I+             + E        A 
Sbjct: 607 TPWQKEFEDSFIYEETDSQLRSIDEIKNDMEDIKPMDRLLCGDVGYGKTEVALRAAFKAV 666

Query: 580 QQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             G ++   V T    ++  + + E      I    +   V   ++ + I +L+ GK D+
Sbjct: 667 MDGYQVCFLVPTTILARQHFKTMQERFKYFPIDCAMLSRFVSKKDQEKYIHNLKSGKIDI 726

Query: 636 LVGIN-LLREGLDIPECGLVAILDADKEG 663
           +VG + LL + +   + GL+ I +  + G
Sbjct: 727 IVGTHRLLSKDIKFKKLGLLIIDEEQRFG 755


>gi|332141064|ref|YP_004426802.1| transcription-repair coupling factor [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327551086|gb|AEA97804.1| transcription-repair coupling factor [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 1165

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 81/501 (16%), Positives = 164/501 (32%), Gaps = 55/501 (10%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +++ +   + P +++  +   A +L  E   F   N          +  P 
Sbjct: 28  LQGSSAALCISQALSQYKGPIVLITADTPSAMKLEKEIAFFLSDNK---------HNTPI 78

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R     R   + +   +V   + +  +   +  ++ +
Sbjct: 79  TLFPDWETLPYDSFSPHQDIVSQRLETLFRFTQQGDGIFIVPVNTLMQRLAPTDYLAKYL 138

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L  GD++++ +   +L +  Y      +    F V G  I++FP    D  +R+ +F 
Sbjct: 139 LMLNKGDTLDRDQFRRNLEQAGYLHVSQVMSHSEFSVRGSIIDLFPM-GSDQPFRIDLFD 197

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F   T +   +V  I++     + T +     A+   +++    L + +   
Sbjct: 198 DEIDSIRYFDTETQRSGESVNKIRLLPAREFPTDKE----AITLFRQQF---LEKFDANN 250

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                             +        +E Y              TLF+Y+   SLL + 
Sbjct: 251 ASESV----------FSQVSKGTMPSGVEYYLPLFFKNT-----ATLFDYLHPKSLLLL- 294

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLP-SCMDNRPLRFEEWNCLRPTTIVVSATPG 533
             H  +   S  +  D   +     Y    P    D   L   E           S T  
Sbjct: 295 --HGDVQDASEFFWADVQERYEQYRYNLARPLLAPDELFLPINELFGAIKQWPRASLTNA 352

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
              LE+  G    Q  +   +     +   A    E +   +N A   G ++L    T+ 
Sbjct: 353 V--LEEKPGTTNLQCEKLDDIAINSQKKVPA----ERLIKTVNHATDNGAKVLFCAETQG 406

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP--EC 651
             E L   L +  I+   + S            D       + + + ++         E 
Sbjct: 407 RREGLLSVLAKAGIKPTIVDSYS----------DFIASHNSIGITVGMVDNSFRWQTEEG 456

Query: 652 GLVAILDADKEGFLRSKTSLI 672
            L+ I + +  G   S+  L 
Sbjct: 457 ELLFITETELLGQKVSQRRLR 477



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 68/180 (37%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         ++    +     + + I     +G 
Sbjct: 769 ILTLTATPIPRTLNMALSGMRDLSIIATAPARRLSIKTFVQQRNKAVIREAIMREILRGG 828

Query: 584 RILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V +  R  E++ E + E  I +   H +++  E   ++ D    +++VLV  
Sbjct: 829 QVYFLHNEVESIARTVEEIAEIVPEARIAMG--HGQMRERELESVMSDFYHQRYNVLVCT 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K +  
Sbjct: 887 TIIETGIDVPSANTIIMDRADHLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKRMTK 942



 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            +  + DQ  AIA ++  + S     +L+ G  G GKT      A +     +   ++ P
Sbjct: 616 PFEETPDQAQAIAAVMHDMGSPSAMDRLVCGDVGFGKTEVAMRAAFLAANAGKQVAILVP 675

Query: 202 NKILAAQLYSEFKNFF 217
             +LA Q Y  FK+ F
Sbjct: 676 TTLLAQQHYENFKDRF 691


>gi|114047309|ref|YP_737859.1| transcription-repair coupling factor [Shewanella sp. MR-7]
 gi|113888751|gb|ABI42802.1| transcription-repair coupling factor [Shewanella sp. MR-7]
          Length = 1160

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 167/445 (37%), Gaps = 54/445 (12%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           + +  ++Q L  + G G+  T+A ++   +   +++  +   A  +  E       +A++
Sbjct: 12  VKNGTQMQTLSCLAGVGQAVTLASLVRQHKGTTLIVTSDTPTALSIELELNYLLAKSAIK 71

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIY 282
                          P  +T      S ++ +   R      + +    +V+  V+  + 
Sbjct: 72  -----------VRLFPDRETLPYDSFSPHQDLISQRLETLSQITQAEHSVVIVPVTTLMM 120

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +      S  +  LK GD  +  ++   L    Y   +     G F + G  ++IFP+ 
Sbjct: 121 RLPPKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTG 180

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
           + ++  R+ +F +++E I  F P T +    V+ +++     +    PT ++A++  ++ 
Sbjct: 181 V-NMPLRIELFDDEVETIRHFDPETQRSSTPVDAVRLLPAKEF----PTDSSAIEGFRQR 235

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            + R   + K     E + + Q ++ +L           IENY          +   TLF
Sbjct: 236 YRRRFEVIVK-----EPESVYQLVSRNL-------MPAGIENYLPLFF-----DEVATLF 278

Query: 463 EYIPEDSLLF----VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           +Y+P+D+ L     +++S     Q       D  R   L      L +  +   L  E +
Sbjct: 279 DYLPKDTQLVTLGDIEKSARAHLQEVETRYEDR-RVDPLRP----LLAPKELYLLIEELF 333

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
              +P        P           +V   ++    V P V   SA  +++     +   
Sbjct: 334 AAFKPLPRYQFIAPQP--------DVVAGAVQIDASVLPEV---SANHKLKQPLIALQDY 382

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLY 603
           A+   R+L +  ++   E L E L 
Sbjct: 383 AEHAPRMLFSAESEGRREALLELLS 407



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+     +    V + I     +G 
Sbjct: 761 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGG 820

Query: 584 RILLT---VLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T     +D++  L E  + V   H +++  +   ++ D    +F+VLV  
Sbjct: 821 QVYYLHNNVETIEKCAQDISTLLPEARVVVA--HGQMRERDLERVMSDFYHQRFNVLVCT 878

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +
Sbjct: 879 TIIETGIDVPSANTIIIERADTFGLAQ----LHQLRGRVGRSHHQAYAYLMTPHPKRM 932


>gi|254388765|ref|ZP_05003997.1| transcriptional-repair coupling factor [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702484|gb|EDY48296.1| transcriptional-repair coupling factor [Streptomyces clavuligerus
           ATCC 27064]
          Length = 1187

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 82/519 (15%), Positives = 156/519 (30%), Gaps = 67/519 (12%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+A+ ++      +  + L    + + F +A +     RP + +      A  L +  +
Sbjct: 25  PALAEAVEAARGGTRTHVDLVGPPAARPFAVAALAREAGRPVLAVTATGREAEDLAAALR 84

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +  P   V  + ++ +    E   PR+DT   + +     + R+ H A          +V
Sbjct: 85  SLLPEEGVAEYPAW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPAADDPAAGPVSVV 139

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           V+ +  +           + V L+ G   +  E++ +L    Y R ++   RG F V G 
Sbjct: 140 VAPIRSVLQPQVKGLGELVPVALRTGQQADLDEVVDALAAAAYSRVELVEKRGEFAVRGG 199

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTPRPTLN 393
            +++FP   E+   RV  +G+DIEEI  F     + +   E  +        +       
Sbjct: 200 ILDVFPP-TEEHPLRVEFWGDDIEEIRYFKIADQRSLEVAEHGLWAPPCRELLLTDEVRR 258

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A      EL     EL +                 L  +    + + +E+ +  L    
Sbjct: 259 RA-----AELAEAHPELGE----------------LLGKISEGIAVEGMESLAPVLVDEM 297

Query: 454 PGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYGFRLP---SC 507
                  L + +P  S+  V +          +    +            G   P     
Sbjct: 298 EL-----LLDVLPTGSMAVVCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGA 352

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
              R +            +  S +P + + E  +  +   +  P           S R  
Sbjct: 353 ASLRSIADVRDRARELGMMWWSVSPFAADEEGGRDTLTLGLNAP----------ESYRGD 402

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
                 +       G R +        A    E L    +  R                D
Sbjct: 403 TARALADTKGWLADGWRTVFVTEAHGPAARTVEVLSGEGVPARL---------------D 447

Query: 628 LRLGKF---DVLVGINLLREGLDIPECGLVAILDADKEG 663
              G+     V V    +  G   P   L  + + D  G
Sbjct: 448 AGTGEIPAAVVQVVCGSIDYGFTAPGLRLAVLTETDLSG 486



 Score = 39.3 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 65/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + +  PP E     T V     + +   I    
Sbjct: 788 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEEKQIGAAIRREL 843

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 844 LREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSESVLEQVVVDFWEKKFDVLV 903

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R        +     K  
Sbjct: 904 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRERGYAYFLYPPEKP- 958

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 959 ---LTETAHERLATIAQHTEMG 977


>gi|299533693|ref|ZP_07047067.1| transcription-repair coupling factor [Comamonas testosteroni S44]
 gi|298718415|gb|EFI59398.1| transcription-repair coupling factor [Comamonas testosteroni S44]
          Length = 1163

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 81/502 (16%), Positives = 168/502 (33%), Gaps = 61/502 (12%)

Query: 178 GSGKTFTMAKVIEAMQ---RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           GS     +A++ E  +   R   ++  +   A +L  E   F P      F  + +    
Sbjct: 19  GSADALLLARLGEREKQDGRVTAIVTADAADAHRLMEEMAFFAPELRCALFPDW-ETLPY 77

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           +++ P  D   E+ +++  +I++      R      D ++V + + +Y +      +   
Sbjct: 78  DSFSPHQDLISERLATL-WRINQ------RDKQHGADVVIVPATTALYRLAPPSFLAGYT 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
            + K G  +++ +L + L    Y+     +  G + V G  I++FP       +RV +F 
Sbjct: 131 FEFKQGQKLDEAKLKAQLTLAGYQHVSQVVSHGEYAVRGGLIDLFPM-GSLQPYRVDLFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P T + +  V  +++     +                    R     +  
Sbjct: 190 DEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDEE--------------ARAKFRSRWR 235

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
            LLE      RI  D   +    +   IE Y          +   T+F+Y+ +++ + + 
Sbjct: 236 ELLEGDPTRSRIYKD---MGAGIATAGIEYYLPLFF-----DETATVFDYLGDEATVVLH 287

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
                  Q       D +R   L +         D+  L  E            S     
Sbjct: 288 GDLEPAFQRFWQDTKDRYR---LVQGD------PDHPALPPETLFLSADQFYTRSKEHAQ 338

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
             L      + +  I     ++    +R A   +  +   I  +A    R+LL   +   
Sbjct: 339 LALRPGTEDVADSAI--FQKLEDLSVLRGADDPLAKLQKHIASSAS---RVLLLAESDGR 393

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD-VLVGINLLREGLDIPECGL 653
            E L ++     +               + + + +    + V +  + L  G    E GL
Sbjct: 394 RESLLDFFRASGVN----------PPVFDSLAEFQADATEKVGIATSSLMTGFAWVEEGL 443

Query: 654 VAILDADKEGFLRSKTSLIQTI 675
             + +   E F  S T   +  
Sbjct: 444 DFVTET--ELFASSPTGRRRRR 463



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 24/150 (16%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            Q+  +++E+     +  +             L E L E  I V   H ++   E   ++
Sbjct: 820 GQIYFLHNEVETIENRKQK-------------LEEILPEARIAVA--HGQMPERELERVM 864

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RD    ++++L+   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +  
Sbjct: 865 RDFVAQRYNILLCSTIIETGIDVPSANTILISRADKFGLAQ----LHQLRGRVGRSHHQ- 919

Query: 686 VILYADTITKSIQLAIDETTRRRE--KQLE 713
              YA  +   +     +  +R E  +Q+E
Sbjct: 920 --AYAYLMVPDLDGLTKQAQQRLEAIQQME 947


>gi|264678103|ref|YP_003278010.1| transcription-repair coupling factor [Comamonas testosteroni CNB-2]
 gi|262208616|gb|ACY32714.1| transcription-repair coupling factor [Comamonas testosteroni CNB-2]
          Length = 1163

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 81/502 (16%), Positives = 168/502 (33%), Gaps = 61/502 (12%)

Query: 178 GSGKTFTMAKVIEAMQ---RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           GS     +A++ E  +   R   ++  +   A +L  E   F P      F  + +    
Sbjct: 19  GSADALLLARLGEREKQDGRVTAIVTADAADAHRLMEEMAFFAPELRCALFPDW-ETLPY 77

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           +++ P  D   E+ +++  +I++      R      D ++V + + +Y +      +   
Sbjct: 78  DSFSPHQDLISERLATL-WRINQ------RDKQHGADVVIVPATTALYRLAPPSFLAGYT 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
            + K G  +++ +L + L    Y+     +  G + V G  I++FP       +RV +F 
Sbjct: 131 FEFKQGQKLDEAKLKAQLTLAGYQHVSQVVSHGEYAVRGGLIDLFPM-GSLQPYRVDLFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P T + +  V  +++     +                    R     +  
Sbjct: 190 DEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDEE--------------ARAKFRSRWR 235

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
            LLE      RI  D   +    +   IE Y          +   T+F+Y+ +++ + + 
Sbjct: 236 ELLEGDPTRSRIYKD---MGAGIATAGIEYYLPLFF-----DETATVFDYLGDEATVVLH 287

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
                  Q       D +R   L +         D+  L  E            S     
Sbjct: 288 GDLEPAFQRFWQDTKDRYR---LVQGD------PDHPALPPETLFLSADQFYTRSKEHAQ 338

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
             L      + +  I     ++    +R A   +  +   I  +A    R+LL   +   
Sbjct: 339 LALRPGTEDVADSAI--FQKLEDLSVLRGADDPLAKLQKHIASSAS---RVLLLAESDGR 393

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD-VLVGINLLREGLDIPECGL 653
            E L ++     +               + + + +    + V +  + L  G    E GL
Sbjct: 394 RESLLDFFRASGVN----------PPVFDSLAEFQADATEKVGIATSSLMTGFAWVEEGL 443

Query: 654 VAILDADKEGFLRSKTSLIQTI 675
             + +   E F  S T   +  
Sbjct: 444 DFVTET--ELFASSPTGRRRRR 463



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 24/150 (16%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            Q+  +++E+     +  +             L E L E  I V   H ++   E   ++
Sbjct: 820 GQIYFLHNEVETIENRKQK-------------LEEILPEARIAVA--HGQMPERELERVM 864

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RD    ++++L+   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +  
Sbjct: 865 RDFVAQRYNILLCSTIIETGIDVPSANTILISRADKFGLAQ----LHQLRGRVGRSHHQ- 919

Query: 686 VILYADTITKSIQLAIDETTRRRE--KQLE 713
              YA  +   +     +  +R E  +Q+E
Sbjct: 920 --AYAYLMVPDLDGLTKQAQQRLEAIQQME 947


>gi|157375968|ref|YP_001474568.1| transcription-repair coupling factor [Shewanella sediminis HAW-EB3]
 gi|157318342|gb|ABV37440.1| transcription-repair coupling factor [Shewanella sediminis HAW-EB3]
          Length = 1157

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 76/453 (16%), Positives = 165/453 (36%), Gaps = 60/453 (13%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            + S  + Q L  + G+ +  T+A +++      + +  +   A  L +E         +
Sbjct: 11  AVKSATRAQTLFTLGGASQAITLANIVQKHDGLTLAVTNDTPTALLLETELTYLLKEKDI 70

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CI 281
                      P    P  +T      S ++ +   R      +      +V+  ++  +
Sbjct: 71  -----------PVWIFPDRETLPYDNFSPHQDLVSQRLETLSRIPNAKQSLVIVPITTLM 119

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +      +  ++ L  GD+   +++   LV   Y   +     G F V G  I++FP 
Sbjct: 120 MRLPPKSFLAGNVLLLTKGDNYCLQDVKQQLVDTGYHMVEQVYEHGEFAVRGSIIDLFPM 179

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
                 +R+ +F +++E I  F P T +    ++++++     +    PT + A++  ++
Sbjct: 180 -GSTQPYRIELFDDEVESIRYFDPETQRSSGTIDSVRLLPAKEF----PTNDAAIEGFRQ 234

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             + R   L K     E + + Q ++              IENY          +   +L
Sbjct: 235 RYRRRFEVLVK-----EPESVYQMVSR-------KLLPAGIENYLPLFF-----DDTASL 277

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR---PLRFEEW 518
           F+Y+P+D+            Q+  +   +   K  LAE   R     +NR   PLR    
Sbjct: 278 FDYLPDDA------------QLVNIGDLEQAVKTHLAEIEIR----YENRRVDPLRP--- 318

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS---ARTQVEDVYDEI 575
             L P  + +       E +Q    +++            +E+     A  +++     +
Sbjct: 319 -LLSPKELYLLTEQIFSEFKQHPRTLLKVGDAQESGHQAKLEVLPDVTANHKLKQPLSLL 377

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
              ++    IL +  ++   E L E L + +I+
Sbjct: 378 QEFSEGAGNILFSAESEGRREALFELLSKIDIK 410



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 68/182 (37%), Gaps = 15/182 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     IR        V + +     +
Sbjct: 759 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLSVKTFIREYDDTT--VIEALQREILR 816

Query: 582 GLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E    +L+E L E  +     H +++  E  +++ D    KF+VLV
Sbjct: 817 GGQVYFLHNNVESIEKRASELSELLPEARVVTA--HGQMRERELEKVMSDFYHQKFNVLV 874

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K +
Sbjct: 875 CTTIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLMTPHPKRM 930

Query: 698 QL 699
             
Sbjct: 931 TK 932


>gi|326441399|ref|ZP_08216133.1| transcription-repair coupling factor [Streptomyces clavuligerus
           ATCC 27064]
          Length = 1176

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 82/519 (15%), Positives = 156/519 (30%), Gaps = 67/519 (12%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+A+ ++      +  + L    + + F +A +     RP + +      A  L +  +
Sbjct: 14  PALAEAVEAARGGTRTHVDLVGPPAARPFAVAALAREAGRPVLAVTATGREAEDLAAALR 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +  P   V  + ++ +    E   PR+DT   + +     + R+ H A          +V
Sbjct: 74  SLLPEEGVAEYPAW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPAADDPAAGPVSVV 128

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           V+ +  +           + V L+ G   +  E++ +L    Y R ++   RG F V G 
Sbjct: 129 VAPIRSVLQPQVKGLGELVPVALRTGQQADLDEVVDALAAAAYSRVELVEKRGEFAVRGG 188

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTPRPTLN 393
            +++FP   E+   RV  +G+DIEEI  F     + +   E  +        +       
Sbjct: 189 ILDVFPP-TEEHPLRVEFWGDDIEEIRYFKIADQRSLEVAEHGLWAPPCRELLLTDEVRR 247

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A      EL     EL +                 L  +    + + +E+ +  L    
Sbjct: 248 RA-----AELAEAHPELGE----------------LLGKISEGIAVEGMESLAPVLVDEM 286

Query: 454 PGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYGFRLP---SC 507
                  L + +P  S+  V +          +    +            G   P     
Sbjct: 287 EL-----LLDVLPTGSMAVVCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGA 341

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
              R +            +  S +P + + E  +  +   +  P           S R  
Sbjct: 342 ASLRSIADVRDRARELGMMWWSVSPFAADEEGGRDTLTLGLNAP----------ESYRGD 391

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
                 +       G R +        A    E L    +  R                D
Sbjct: 392 TARALADTKGWLADGWRTVFVTEAHGPAARTVEVLSGEGVPARL---------------D 436

Query: 628 LRLGKF---DVLVGINLLREGLDIPECGLVAILDADKEG 663
              G+     V V    +  G   P   L  + + D  G
Sbjct: 437 AGTGEIPAAVVQVVCGSIDYGFTAPGLRLAVLTETDLSG 475



 Score = 39.3 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 65/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + +  PP E     T V     + +   I    
Sbjct: 777 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEEKQIGAAIRREL 832

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 833 LREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSESVLEQVVVDFWEKKFDVLV 892

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R        +     K  
Sbjct: 893 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRERGYAYFLYPPEKP- 947

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 948 ---LTETAHERLATIAQHTEMG 966


>gi|325479334|gb|EGC82430.1| transcription-repair coupling factor [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 1167

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 66/461 (14%), Positives = 160/461 (34%), Gaps = 49/461 (10%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   I   +           L G+T   K   +  + +      +++A N+  A +  ++
Sbjct: 13  QVEEIEHYIDDYS----PIYLSGLTDGFKPHLVLTLFKKFNETCLLIAENEKKAEKYAND 68

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                  +A+ Y              P  D       +I+ +    R +    L +    
Sbjct: 69  INGVCEDSAIYY--------------PNLDINFYNIKAIDNENLSQRINVLTKLSKNEKY 114

Query: 273 IVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           I+++S+  I   + +++ ++   V+++  D ++    +  L+   Y   ++   +G F  
Sbjct: 115 IIITSLDAITNKLTTLDEFNNGFVKIQDEDVIDVNYFIQKLISLSYNPTNLVESKGDFAK 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I+ +P H ++   R+ +F ++++ I  F   + + +  +  +++   S  +     
Sbjct: 175 RGSIIDFWPVHYDN-PIRLELFDDEVDSIRFFDKDSQRTLEIISEVEVGPVSELIYSNED 233

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
            N  +  I +++     +           + +Q I+Y  + +       + +  + Y   
Sbjct: 234 YNKVIDNIDKDISST-KKNGDSNTQKFINKYKQIISYIKDSM----YVANQDLINAYRNC 288

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
                      +Y+P++SL+F D+    I                  E G          
Sbjct: 289 NYDN-----FLDYLPKNSLIFFDDVTRLIDNYERTTESFLEDLTLQMENG--------EV 335

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART----- 566
              FE  N   P   +     G  E        + +  +        +EI+S  +     
Sbjct: 336 SKNFE--NVRIPIENIY---KGLEEFRLLNLTSILKKSK-KFNPKKIIEIKSIESENFNR 389

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           +V+   +     A +G +IL+    ++  + L E   E++ 
Sbjct: 390 KVDFFINRTIELADRGSKILVLSSNEKTRDQLYEAYLEKDY 430



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 70/193 (36%), Gaps = 20/193 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV-----EDVYDEINLA 578
            + +SATP    L+          IR    +D P E R    T V       +   I   
Sbjct: 774 VLTLSATPIPRTLQMSLSG-----IRDLSTLDEPPEERMPVNTYVIEYDNSIIKQAIERE 828

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +G ++          E L  ++ +      V  +H +V   +  + + +   G+ DVL
Sbjct: 829 ISRGGQVYFVYNRVNDIEKLYNHIKDLVPESTVAIIHGKVSPKQIEKTMFEFIDGEIDVL 888

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +   ++  G+DI     + I D+D  G  +    L Q  GR  R   S    +     K 
Sbjct: 889 LSTTIIETGMDISNVNTMIIYDSDMMGLSQ----LYQLKGRIGRGNRSSYAYFTYRTGKI 944

Query: 697 IQLAIDETTRRRE 709
           +    D + +R +
Sbjct: 945 LT---DISEKRLK 954


>gi|221067482|ref|ZP_03543587.1| transcription-repair coupling factor [Comamonas testosteroni KF-1]
 gi|220712505|gb|EED67873.1| transcription-repair coupling factor [Comamonas testosteroni KF-1]
          Length = 1163

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 80/502 (15%), Positives = 166/502 (33%), Gaps = 61/502 (12%)

Query: 178 GSGKTFTMAKVIEAMQ---RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           GS     +A++ E  +   R   ++  +   A +L  E   F P      F  + +    
Sbjct: 19  GSADALLLARLGEREKQDGRVTAIVTADAADAHRLMEEMAFFAPELRCALFPDW-ETLPY 77

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           +++ P  D   E+ +++  +I++      R      D ++V + + +Y +      +   
Sbjct: 78  DSFSPHQDLISERLATL-WRINQ------RDRQHGADVVIVPATTALYRLAPPSFLAGYT 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
            + K G  +++ +L + L    Y+     +  G + V G  I++FP       +RV +F 
Sbjct: 131 FEFKQGQKLDEAKLKAQLTLAGYQHVSQVVSHGEYAVRGGLIDLFPM-GSLQPYRVDLFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P T + +  V  +++     +                    R     +  
Sbjct: 190 DEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDEE--------------ARAKFRSRWR 235

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
            LLE      RI  D   +    +   IE Y          +   T+F+Y+ +++ + + 
Sbjct: 236 ELLEGDPTRSRIYKD---MGAGIATAGIEYYLPLFF-----DETATVFDYLGDEATVVLH 287

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
                  Q       D +R   L +         D+  L  E            S     
Sbjct: 288 GDLEPAFQRFWQDTKDRYR---LVQGD------PDHPALPPETLFLSADQFYTRSKEHAQ 338

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
             L      + +  I     ++    +R A   +  +   I        R+LL   +   
Sbjct: 339 LALRPGTEDVADSAI--FQKLEDLSVLRGADDPLAKLQKHIAAGTS---RVLLLAESDGR 393

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD-VLVGINLLREGLDIPECGL 653
            E L ++     +               + + + +    + V +  + L  G    E GL
Sbjct: 394 RESLLDFFRASGVN----------PPVFDSLAEFQADATEKVGIATSSLMTGFAWVEEGL 443

Query: 654 VAILDADKEGFLRSKTSLIQTI 675
             + +   E F  S T   +  
Sbjct: 444 DFVTET--ELFASSPTGRRRRR 463



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 24/150 (16%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            Q+  +++E+     +  +             L E L E  I V   H ++   E   ++
Sbjct: 820 GQIYFLHNEVETIENRKQK-------------LEEILPEARIAVA--HGQMPERELERVM 864

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RD    ++++L+   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +  
Sbjct: 865 RDFVAQRYNILLCSTIIETGIDVPSANTILISRADKFGLAQ----LHQLRGRVGRSHHQ- 919

Query: 686 VILYADTITKSIQLAIDETTRRRE--KQLE 713
              YA  +   +     +  +R E  +Q+E
Sbjct: 920 --AYAYLMVPDLDGLTKQAQQRLEAIQQME 947


>gi|170720851|ref|YP_001748539.1| transcription-repair coupling factor [Pseudomonas putida W619]
 gi|169758854|gb|ACA72170.1| transcription-repair coupling factor [Pseudomonas putida W619]
          Length = 1149

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 122/316 (38%), Gaps = 40/316 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   +  R  +++  +   A +L  E + F P   V  F          
Sbjct: 21  LPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPGLPVLPF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI-VVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E +  I VV   + ++ +          
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPTRFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G +++ +++ S L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQTIDVEQMRSRLEATGYRCVDTVYEHGEFAVRGALIDLFPM-GSKLPYRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  V++I++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPETQRSIDKVDSIRLLPAREFPMQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +      IE Y          E   TLF+Y+P D+ +F  
Sbjct: 237 -------VDFRRSAIFQDLASGIIPAGIEYYLPLFF-----EETSTLFDYLPSDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD 490
            S   + Q +  +  D
Sbjct: 283 -SLPGVEQAAEHFWND 297



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DL E + E  I +   H +++  E  +++ D    +F+VL+   ++  G+D+P    + I
Sbjct: 830 DLAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIVI 887

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             ADK G  +    L Q  GR  R+ +     YA  +T + Q    +  +R E
Sbjct: 888 ERADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPARQKVSADAEKRLE 933



 Score = 41.2 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 4/131 (3%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTF 183
             + ++  + + D   F     +  + DQ  AI  +    + ++   +L+ G  G GKT 
Sbjct: 579 ARKGYAFADPAADYATFSAGFPFEETPDQQNAIEAVRADMLAAKPMDRLVCGDVGFGKTE 638

Query: 184 T---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
                A +     R   V+ P  +LA Q Y+ F++ F    V   V        E     
Sbjct: 639 VAMRAAFIAVHSGRQVAVLVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVASAA 698

Query: 241 TDTYIEKESSI 251
            D    K   +
Sbjct: 699 ADLAEGKIDIL 709


>gi|54296975|ref|YP_123344.1| transcription-repair coupling factor [Legionella pneumophila str.
           Paris]
 gi|53750760|emb|CAH12167.1| Transcription-repair coupling factor [Legionella pneumophila str.
           Paris]
          Length = 1153

 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 78/502 (15%), Positives = 167/502 (33%), Gaps = 65/502 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +A+  +      +++  + + A+QL  E + F   N            Q  
Sbjct: 20  LYGSSLALALAEYCQQTPGIKLLITQDNLCASQLQDELQFFLNPNQN---------TQEL 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
            + P  +T    + S ++ I   R      + +  + I++SS S +   +   E  +Q  
Sbjct: 71  LFFPDWETLPYDQFSPHQDIISERLYTLSRVQQITNGIIISSASTLMHRLSPPEFLNQYA 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + LK G  ++     + L +  Y   +  +  G + + G  I+++P     + +R+ +F 
Sbjct: 131 LMLKEGQKLDLNSFRNQLQQAGYHCVNKVLEHGEYALRGSIIDVYPM-GSGLPFRIELFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE + EF P T + I  +  I +     +              + +L  R    E   
Sbjct: 190 DEIESLREFDPETQRTIEKINQIHLLPAREFPLNE----------QSQLHFRRAFRESFP 239

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                           E +  +     IE Y          +   T F+Y+P ++ + + 
Sbjct: 240 GNPSH-------CPIYEAISNSQFPSGIEYYLPLFF-----DKTVTFFDYLPANAKICLI 287

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           E   T       +R    R               D         NC    T +++    +
Sbjct: 288 E--ETQENAERFWRELNERYEQRR---------HDVSRPILTPDNCFINPTELLTKA-NN 335

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSA----RTQVEDVYDEINLAAQQGLRILLTVL 590
           +E    Q  +  +     G ++  +         R  +E +       +    R L+ V 
Sbjct: 336 YE----QVRLYHKPSEKKGALNFNIAKAPQLPIDRKNIEPLRQLSEYCSDPTRRYLIVVE 391

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII-RDLRLGKFDVLVGINLLREGLDIP 649
           +    E L + L   +I           + R +    D    +  + +    L  G ++ 
Sbjct: 392 SAGRREVLLDLLKSSHI-----------IPRTQNSWLDFIYDESPINITTGPLIYGCELT 440

Query: 650 ECGLVAILDADKEGFLRSKTSL 671
           +  +V I+++   G   +    
Sbjct: 441 DKQIVIIVESQLFGEQSTPQRR 462



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 68/176 (38%), Gaps = 11/176 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-DVYDEINLAAQQGL 583
            + ++ATP    L      I +  +  T            + + +  + + I     +G 
Sbjct: 754 ILSMTATPIPRTLNMAMAGIRDISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGG 813

Query: 584 RILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T  R+ +DL   + E  I+    H +++  +   I+ D    +F+VLV  
Sbjct: 814 QVFYLHNNVQTIERVCQDLEALVPEAKIQSA--HGQMRERQLERIMSDFYHHRFNVLVCT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +           K
Sbjct: 872 TIIETGIDIPTANTIIIDRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNEK 923



 Score = 42.8 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 146 DYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            +  + DQ  AI Q+++ + S R   +L+ G  G GKT      A V     +   ++AP
Sbjct: 601 PFTETPDQLQAIEQIIRDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAP 660

Query: 202 NKILAAQLYSEFKNFFPHNAV 222
             +LA Q +  F++ F    V
Sbjct: 661 TTLLAGQHFESFRDRFAEFPV 681


>gi|33863047|ref|NP_894607.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9313]
 gi|33634964|emb|CAE20950.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9313]
          Length = 1193

 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 86/511 (16%), Positives = 179/511 (35%), Gaps = 60/511 (11%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +L+   +  +++ L+ G    G+    + +     RP +V+ P    A +  S       
Sbjct: 18  ELVDRSNRNDRL-LMRGAGRVGRALIASAIARKQNRPLVVIVPTLEEANRWSSLLAMMGW 76

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
            +   Y  S    Y+P  + P T+    +   ++E +         S    +  IV +  
Sbjct: 77  SHNHLYPTSEGSPYEP--FDPTTEIVWGQLQVLSELLG-------ESSRSWDRAIVATER 127

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           +    +  V++ +     L  G+ ++ + L ++L K  Y R        T+   GD ++I
Sbjct: 128 ALQPHLPPVDALASQCEILCRGEHIDLESLANTLSKLGYDRVTTVDQEATWSRRGDIVDI 187

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP   E +  R+ +FG++++++ EF P++ + +  V  + +  +                
Sbjct: 188 FPVSSE-LPVRLELFGDELDKLKEFDPISQRSLDEVNELCLTPSGFSPL----------- 235

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           I  +L+  +   +   RL+  + L+Q        L    +   I    R L G      P
Sbjct: 236 IAHQLRESMP--DGLDRLVSEKTLDQ--------LLEGSTPDGI----RRLMGIAWN-KP 280

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
            +L +YIP +S + +DE                       + G  +    D +   +   
Sbjct: 281 ASLLDYIPANSFIAIDEKRHGSAHGKLWLEHAEEHH---IDVGQSMGLSTDEQKKYWPPL 337

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
                     + T     ++  +    +       L   P+       Q   + ++I   
Sbjct: 338 LHRSIKESYAT-TDRFAGIDLAELHEDDGYANSFDLASRPIPANP--NQFGRLGEQIKNY 394

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-----HSEVKTLERIEIIRDLR-LGK 632
            ++   + L       A  L   L E +   R++     H  ++ L        L+  G 
Sbjct: 395 QKEHHPVWLLSAQPSRAVAL---LEEHDCITRFVPNAKDHPAIERLLEQNTPVALKTTGS 451

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEG 663
            D+        EGL +P   +V + D +  G
Sbjct: 452 VDL--------EGLILPAWRVVLMTDREFFG 474



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 70/197 (35%), Gaps = 21/197 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E V   I    
Sbjct: 773 VLTLSATPIPRTLYMSLSGVREMSLITT----PPPLRRPIKTHLAAFDEEAVRSSIRQEL 828

Query: 580 QQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +G ++   V      ED    L + L +  + V   H ++   E    +     G+ D+
Sbjct: 829 DRGGQVFYVVPRVEGIEDVARQLQQMLPDLKLLVA--HGQMAEGELESSMVAFNAGEADL 886

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           ++   ++  GLDIP    + I DA K G  +    L   +GR+    ++ +    D    
Sbjct: 887 MLCTTIVESGLDIPRVNTILIEDAHKFGLAQ-LYQLRGRVGRSGVQAHAWLFYPGDASLS 945

Query: 696 SIQLAIDETTRRREKQL 712
                     R R  Q 
Sbjct: 946 DTAR-----QRLRAIQE 957


>gi|72160828|ref|YP_288485.1| transcription-repair coupling factor [Thermobifida fusca YX]
 gi|71914560|gb|AAZ54462.1| transcription-repair coupling factor [Thermobifida fusca YX]
          Length = 1210

 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 95/552 (17%), Positives = 173/552 (31%), Gaps = 86/552 (15%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ----RPAIVMAPNKIL 205
           +GD   A+ + ++   +     L L    S +   +A +         RP + +   +  
Sbjct: 32  TGD--PALKRAIETARNGHDPLLDLVAPPSVRPLIVAGLAADAPVGAGRPVLALTATERE 89

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           AA L S   +  P ++V  F ++ +    E   PR+DT  ++ +     + R+ H     
Sbjct: 90  AADLNSALGSLLPADSVALFPAW-ETLPHERLSPRSDTVGQRLAV----LRRLTHPDPDD 144

Query: 266 LLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            L     +VV+ +  +      G+G ++        ++ GDSV   EL+ SLV   Y R 
Sbjct: 145 PLTAPLRVVVAPIRSVLQPLVSGLGDLQPVR-----VREGDSVALDELVQSLVDIGYSRV 199

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN---VETI 377
           D+   RG   V G  +++FP   E+   R+  +G+ +EEI  F     + I      E  
Sbjct: 200 DLVEKRGDIAVRGGILDVFPP-TEEHPLRLEFWGDTVEEIRYFQVADQRSISKPGAAEAG 258

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
                   +    T+    + +  E       L K                    L    
Sbjct: 259 LFAPPCRELLLTDTVRKRARALAAEYPALADILTK--------------------LADGV 298

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF-VDESHVTI--PQISGMYRGDFHRK 494
           + + +E ++  L  R        L + +P  + +   D   +     ++    +      
Sbjct: 299 AVEGMEAFAPVLADRMEL-----LLDLLPPGTHIVGCDPERIRTRAQELVATSQEFLEAS 353

Query: 495 ATLAEYGFRLP---------SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
              A  G   P         S  + R    E        T      P + E +    +  
Sbjct: 354 WINAASGGEAPIDLGASAYQSIAELRSRARELGLPWWTVTPFDPGNPAAAEDDHSVVVGA 413

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
                              R   E    ++     +G R++L    +  AE L   L + 
Sbjct: 414 SATDA-------------YRGDTERAIADVKSWLHEGWRVVLLTPGQGPAERLASMLRDA 460

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
                     + T  R  +            V   LL  G        V + + D  G  
Sbjct: 461 G---------LGTQLRDALPEPPEPAV--ATVTTGLLEHGFVWRSVRTVLLTETDLVGQR 509

Query: 666 RSKTSLIQTIGR 677
            S   + +   R
Sbjct: 510 SSTRDMRRMPSR 521



 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 13/160 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV----- 568
           E    LR     + +SATP    LE     I E     T ++ PP E     T V     
Sbjct: 797 EALKRLRTQVDVLSMSATPIPRTLEMGLTGIREM----TTILTPPEERHPVLTFVGPYDE 852

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIR 626
           + +   I     +  ++          E     +       R  + H ++   +   ++ 
Sbjct: 853 KQIAAAIRRELMREGQVFFVHNRVASIERAAATVSRLVPEARVAWAHGQMNEHQLERVMV 912

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           D    KFDVLV   ++  GLD+P    + +  AD  G  +
Sbjct: 913 DFWEKKFDVLVCTTIVESGLDVPNANTLIVDRADTYGLAQ 952


>gi|310824213|ref|YP_003956571.1| transcription-repair-coupling factor [Stigmatella aurantiaca
           DW4/3-1]
 gi|309397285|gb|ADO74744.1| Transcription-repair-coupling factor [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1194

 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 165/482 (34%), Gaps = 51/482 (10%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P+GD P   A+LL+ +    + +   G+ G+ +   +A++   ++ P + +A ++  A  
Sbjct: 20  PTGD-P--FARLLERLQPGHRART-QGLHGAARGHVLARLSRTLKAPLVCVAVDEEAADA 75

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L  +   F   N                 +P  +     E S    I   R      L +
Sbjct: 76  LAGDLAFFLGGNGTLL-------APRVLRLPADEVLPYDELSPEPHIVSERLGTLFHLSQ 128

Query: 269 --RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
             R   +V+S  + +  +  V + + +   L  G  +++  L   LV   Y+   +    
Sbjct: 129 GTRFPALVLSLRALLRRVLPVSTMTGLAQLLTTGQDIDRDTLARQLVLMGYQSSPLVEDP 188

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           GTF V G  +++F    E    R+  FG+ IE I  F P   + + +++ + +      +
Sbjct: 189 GTFSVRGGILDVFSPLYE-RPVRLEFFGDTIESIRLFEPDNQRTVDSLKEVSLVPARELL 247

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
               T   A                 +   L   +L +R+    + L        +E   
Sbjct: 248 LTDQTRAKA---------EATARAVADHINLPTIKLRERL----DALREGLPGFGLEGLL 294

Query: 447 R-YLTGRNPGEPPPTLFEYI---PEDSLLFVDESHVTIPQISGMYRG-DFHRKATLAEYG 501
             +  G        T+F+Y+     + + + D+        + ++   +   +   A   
Sbjct: 295 PGFFEGGL-----ATVFDYLRLWAREPVFYFDDPVGLERAATDLWEELERSHQEADARQD 349

Query: 502 FRLPSC-----MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
             LP        +    +   W  +    + +  TPG       Q  ++        L +
Sbjct: 350 LTLPPSEHFLTREQADAQLAGWRGVEGGGLAL--TPGE------QPPVLFSFGGTQDLRE 401

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
             +        +  + + +       +   +   T   A+ L   L +R++ VR +H E 
Sbjct: 402 AILAHHGEEGALTPLVERLQRWRDMHVACAIACGTLSQADRLKRLLLDRHLMVR-IHEEP 460

Query: 617 KT 618
            T
Sbjct: 461 LT 462



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 68/200 (34%), Gaps = 17/200 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVED 570
           E+   LR     + ++ATP    L      + +  I  T   D       +     QV  
Sbjct: 788 EQLKRLRTQVDVLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIRTFVMKFDPQV-- 845

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDL 628
           + + I     +G ++       +    + + L E    + +   H ++   +   ++   
Sbjct: 846 IQEAIQREVARGGQVFFVHNRVQSIASMEKLLRELVPKVSIGVAHGQMGEGQLERVMLAF 905

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              +  VL+  +++  G+DI     + I  AD  G  +    L Q  GR  R+       
Sbjct: 906 TEKQHQVLLCTSIIESGIDISSANTMIINRADAFGLAQ----LYQLRGRVGRSKERAYAY 961

Query: 689 YADTITKSIQLAIDETTRRR 708
                    + A+    +RR
Sbjct: 962 LLVP----ARRAVTRDAQRR 977



 Score = 37.4 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 4/115 (3%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT- 182
            H   + +   +    F+   ++  + DQ  AI  +L  +       +L+ G  G GKT 
Sbjct: 625 AHPGHAFSAPDRYFAQFEADFEFEETPDQAKAIEDVLADMQKPTPMDRLVCGDVGYGKTE 684

Query: 183 FTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
             M    +A   ++   V+ P  +LA Q +  FK  F    +   V       PE
Sbjct: 685 VAMRAAFKAALDRKQVAVLVPTTVLAQQHFLSFKKRFKDYPITVEVISGLKKPPE 739


>gi|325662342|ref|ZP_08150951.1| hypothetical protein HMPREF0490_01690 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471344|gb|EGC74567.1| hypothetical protein HMPREF0490_01690 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 1115

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 112/266 (42%), Gaps = 20/266 (7%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A I ++         +  + G  GS KT     +    +   +++   +  A Q+Y E++
Sbjct: 14  AEIEEIQNEKKKEAGLIQITGCVGSQKTHLTCALGSDCKYK-LIVTSGESKAKQMYEEYR 72

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
             F    V  +             P  D          +Q+   R    ++LL    C V
Sbjct: 73  --FLKETVYLY-------------PAKDLLFYHADLRGKQLVSSRMETIQALLLGEGCTV 117

Query: 275 VSSVSC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           +++    +  +  +E+  + I  LK+GD ++ +++   L    Y+R+      G F V G
Sbjct: 118 ITTFDAFMDSLLPIETIRERIFSLKVGDIIDFEKVQKDLALLGYEREVQIEGPGQFAVRG 177

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++++P   E+V  R+ ++ ++I+ I  F   + + I N+E I IY  S ++  +    
Sbjct: 178 GILDVYP-LTEEVPVRIELWDDEIDSIRTFDVESQRSIENLEEITIYPASEFMDEKTKRV 236

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEA 419
           + + Y   E    L+ LE+  RL+E 
Sbjct: 237 SFLDYFPRE--DTLLFLEEPARLIEQ 260



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 79/190 (41%), Gaps = 16/190 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +  +    L +PP++    +T V     E V + I    
Sbjct: 717 VLTLTATPIPRTLHMSLIGIRDMSV----LEEPPMDRMPIQTYVMEYNDEMVREAIEREL 772

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++       +  +++ + + +      V + H +++  +   I+ D   G+ DVL+
Sbjct: 773 ARDGQVYYVYNRVQDIDEVADRIQKLVPEANVAFAHGQMREHQLERIMYDFINGEIDVLI 832

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + I DAD+ G L     L   +GR+ R   + ++   D + K +
Sbjct: 833 STTIIETGLDISNANTMIIHDADRLG-LSQLYQLRGRVGRSNRMAYAFLLYKRDKLLKEV 891

Query: 698 QL----AIDE 703
                 AI E
Sbjct: 892 AEKRLSAIRE 901



 Score = 37.4 bits (85), Expect = 9.4,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 91/269 (33%), Gaps = 43/269 (15%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
               + AT    E    + I+   I    G     V +R+A   V++    + L      
Sbjct: 571 QLNAIEATKKDME---SKKIMDRLICGDVGYGKTEVAVRAAFKAVQESKQVVYLVP---- 623

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LL 642
               TVL ++      + + +  +RV  +       ++ + I D+R G  D+++G + +L
Sbjct: 624 ---TTVLAQQHYNTFVQRMKDFPVRVDLLCRFRTPAQQRKTIDDVRKGLVDIVIGTHRVL 680

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN---------SKVILYADTI 693
            + L   + GL+ I +  + G    +      I +   NV+          + +  +   
Sbjct: 681 SDDLKFKDLGLLIIDEEQRFGVQHKE-----KIKQMKENVDVLTLTATPIPRTLHMSLIG 735

Query: 694 TKSIQLAIDETTRRREKQ---LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
            + + +  +    R   Q   +E+N +           + E I+  L  D     +    
Sbjct: 736 IRDMSVLEEPPMDRMPIQTYVMEYNDEM----------VREAIERELARDGQVYYVYNRV 785

Query: 751 QQLSLSKKKGKAHLKS-----LRKQMHLA 774
           Q +     + +  +          QM   
Sbjct: 786 QDIDEVADRIQKLVPEANVAFAHGQMREH 814


>gi|284033574|ref|YP_003383505.1| transcription-repair coupling factor [Kribbella flavida DSM 17836]
 gi|283812867|gb|ADB34706.1| transcription-repair coupling factor [Kribbella flavida DSM 17836]
          Length = 1212

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 98/547 (17%), Positives = 165/547 (30%), Gaps = 74/547 (13%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYS 211
            A+        +     L L   G  +   +A +        RP + +      A +L  
Sbjct: 18  EAVRDARSDFAAGGVATLDLSAPGPIRPVLLAALASERLGADRPVLAVTATFREAEELTE 77

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
             +       V Y+ ++ +    E   PR+DT   + +     + R+ H           
Sbjct: 78  ALQCLVEPATVAYYPAW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPDPSDETTGPI 132

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            I+V+ V  +             VQL +GDSVE +++++ L    Y R D+   RG F V
Sbjct: 133 KILVAPVRSVLQPQVAGLADLRPVQLHVGDSVELEDVVTRLAAAAYNRVDLVERRGEFAV 192

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI-KIYANSHYVTPRP 390
            G  I++FP   E+   RV  FG+D+EEI  F     + +   +           +    
Sbjct: 193 RGGIIDVFPP-TEEHPLRVDFFGDDVEEIRYFAVADQRSLEIAQHGLWAPPCRELLLTDE 251

Query: 391 TLNTAMKYIKE--ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
               A    KE  EL                           E L    + + +E+ +  
Sbjct: 252 VRARAAVLAKEHPELAE-----------------------LFEKLAEGHAVEGMESLAPV 288

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYGFRLP 505
           L           L + +P  + + V +          +    +         A  G   P
Sbjct: 289 LVDEMEL-----LVDLMPAGTHVVVSDPERVRARAHDLVATSQEFLEASWAAAAGGGDAP 343

Query: 506 ---------SCMDNRPLRFEE---WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT- 552
                    S  D R    +    W  L P     +  P    L    G  V   I P  
Sbjct: 344 IDLGAAAYISLADVRTHALDRGLAWWSLSPFAAAPTDVPQ---LRDAMGERVSFDIDPDA 400

Query: 553 GLVDPPV----EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           G V        E+   R +     +++    + G R++        A+ L E   E  + 
Sbjct: 401 GAVRSRKVAAHEVDPYRGETAAAVEDVRGWLRDGWRVVCVTEGHGPAQRLAEVFSEAELP 460

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            R + S     E              VL+    L +G          + + D  G   + 
Sbjct: 461 ARTVDSIDGVPE-----------PGVVLISQGALEQGFIAEGIKFAVLTENDLAGQRSAA 509

Query: 669 TSLIQTI 675
               Q  
Sbjct: 510 ERRSQQR 516



 Score = 37.8 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 17/152 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--------RTQVEDVYDEIN 576
            + +SATP    LE     I E     T    PP E              QV        
Sbjct: 812 VLTMSATPIPRTLEMSITGIREMSTIAT----PPEERHPVLTFVGPYDEGQVTAAIRREL 867

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFD 634
           L   Q   + +        E     + +     R    H ++      ++I++    + D
Sbjct: 868 LREGQ---VFVVHNRVNTIEKAAARIRQLVPEARVSVAHGQMPEHHLEQVIQEFWEKQAD 924

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           V+V   ++  G+DI     + +  AD  G  +
Sbjct: 925 VIVCTTIVESGIDISNANTMIVERADLLGLSQ 956


>gi|308050222|ref|YP_003913788.1| transcription-repair coupling factor [Ferrimonas balearica DSM
           9799]
 gi|307632412|gb|ADN76714.1| transcription-repair coupling factor [Ferrimonas balearica DSM
           9799]
          Length = 1156

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 82/470 (17%), Positives = 161/470 (34%), Gaps = 68/470 (14%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           + + P   +P A      G HS+ +   L G+ GS K+  +  +        +++  +  
Sbjct: 2   SRFSP--LEPPA-----GGPHSKLR---LTGLVGSAKSLAINTMARRHSGLTLLLTHDTP 51

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
            A +L  E       +             P    P  +T      S ++ I   R  A  
Sbjct: 52  TALRLEQELAYLCRDDL------------PVLLFPDRETLPYDSFSPHQDIVSQRLEALH 99

Query: 265 SLLERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
           +L      +V+  V   +  +      +  +V+ + G +++ ++L   L +  Y   D  
Sbjct: 100 ALPGLKRGLVILPVPTALTRVCPPAFVAGKVVRFEQGQTLDIEKLRQDLTQAGYHHVDQV 159

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G + + G  +++FP    D   R+ +F +++E I  F P T +    + +I +    
Sbjct: 160 REHGEYAIRGAIVDLFPM-GSDTPLRLDLFDDELESIRPFDPDTQRSEGTLPSISLLPAR 218

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
            +    PT    +   +   + R             +R+        + +        +E
Sbjct: 219 EF----PTDAAGIDSFRAHYRQR------------FERISNEAESVYQQVSKGILPGGVE 262

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           NY          +   T+F+++P D+ +        I      Y  D        E    
Sbjct: 263 NYLPLFF-----DQTATVFDFLPNDTQMLTVGP---IQDACERYLSDAE---ARYENQRV 311

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE----QIIR-PTGLVDPP 558
            P     RPL       L P  + +       E++Q   I +E    +I R P   VD  
Sbjct: 312 DP----LRPL-------LAPHELFLRNEELFSEIKQRGRIQLEAGVSEIAREPRADVDDV 360

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
            EI      ++     +    +   R+L +V ++   E L E L    ++
Sbjct: 361 QEI-EINHLLKTPLAPLLSYLENVPRVLFSVESEGRREALLELLRPAGLK 409



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     +  V + +     +
Sbjct: 755 ILTLTATPIPRTLNMAMSGMRDLSIIATAPKRRLSVKTFVRPQEGAL--VREALMREILR 812

Query: 582 GLRILLT---VLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T +   ++L + + E  + +   H +++  E  +++ D   G+F++LV
Sbjct: 813 GGQVYYLHNSVETIQECADELAKLVPEARVGIA--HGQMRERELEQVMSDFHHGRFNLLV 870

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
              ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +
Sbjct: 871 CTTIIETGIDIPSANTILIERADKFGLAQ----LHQLRGRVGRSHH 912



 Score = 39.3 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A   G ++ + V T    ++  E+  +   +  +RV  M       E+
Sbjct: 637 GKTEVAMRAAFVAVNGGKQVAVLVPTTLLAQQHYENFRDRFADWPVRVEVMSRFRTASEQ 696

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEG 663
            +++  L  GK D+L+G + LL+  ++ P+ GL+ + +  + G
Sbjct: 697 KKVLEQLAEGKVDILIGTHKLLQSEINFPDLGLLIVDEEHRFG 739


>gi|115371929|ref|ZP_01459242.1| transcription-repair coupling factor [Stigmatella aurantiaca
           DW4/3-1]
 gi|115371164|gb|EAU70086.1| transcription-repair coupling factor [Stigmatella aurantiaca
           DW4/3-1]
          Length = 494

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/397 (16%), Positives = 140/397 (35%), Gaps = 47/397 (11%)

Query: 117 LKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGV 176
           L+N  + TP    + +   +            P+GD P   A+LL+ +    + +   G+
Sbjct: 33  LRNPGMDTPFSQTAGSEALRGAVP--------PTGD-P--FARLLERLQPGHRART-QGL 80

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
            G+ +   +A++   ++ P + +A ++  A  L  +   F   N                
Sbjct: 81  HGAARGHVLARLSRTLKAPLVCVAVDEEAADALAGDLAFFLGGNGTLL-------APRVL 133

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLE--RNDCIVVSSVSCIYGIGSVESYSQMI 294
            +P  +     E S    I   R      L +  R   +V+S  + +  +  V + + + 
Sbjct: 134 RLPADEVLPYDELSPEPHIVSERLGTLFHLSQGTRFPALVLSLRALLRRVLPVSTMTGLA 193

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMF 353
             L  G  +++  L   LV   Y+   +    GTF V G  +++F P +  +   R+  F
Sbjct: 194 QLLTTGQDIDRDTLARQLVLMGYQSSPLVEDPGTFSVRGGILDVFSPLY--ERPVRLEFF 251

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
           G+ IE I  F P   + + +++ + +      +    T   A                 +
Sbjct: 252 GDTIESIRLFEPDNQRTVDSLKEVSLVPARELLLTDQTRAKA---------EATARAVAD 302

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR-YLTGRNPGEPPPTLFEYI---PEDS 469
              L   +L +R+    + L        +E     +  G        T+F+Y+     + 
Sbjct: 303 HINLPTIKLRERL----DALREGLPGFGLEGLLPGFFEGGL-----ATVFDYLRLWAREP 353

Query: 470 LLFVDESHVTIPQISGMYRG-DFHRKATLAEYGFRLP 505
           + + D+        + ++   +   +   A     LP
Sbjct: 354 VFYFDDPVGLERAATDLWEELERSHQEADARQDLTLP 390


>gi|145629307|ref|ZP_01785106.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21]
 gi|144978810|gb|EDJ88533.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21]
          Length = 115

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/113 (59%), Positives = 82/113 (72%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
            L +DESHVT+PQI GMYRGD  RK TL EYGFRLPS +DNRPLRFEE+  L P TI VS
Sbjct: 3   FLIIDESHVTVPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVS 62

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
           ATPG +ELE+    I++Q++RPTGL+DP +EIR    QV+D+  E    A + 
Sbjct: 63  ATPGPYELEKSGSEIIDQVVRPTGLLDPLIEIRPVSIQVDDLLSEARQRADKK 115


>gi|117920732|ref|YP_869924.1| transcription-repair coupling factor [Shewanella sp. ANA-3]
 gi|117613064|gb|ABK48518.1| transcription-repair coupling factor [Shewanella sp. ANA-3]
          Length = 1160

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 166/445 (37%), Gaps = 54/445 (12%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           + +  ++Q L  + G G+  T+A ++   +   +++  +   A  +  E       + ++
Sbjct: 12  VKNGTQMQTLSCLAGVGQAVTLASLVRQHKGTTLIVTSDTPTALSIELELNYLLAKSVIK 71

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIY 282
                          P  +T      S ++ +   R      + +    +V+  V+  + 
Sbjct: 72  -----------VRLFPDRETLPYDSFSPHQDLISQRLETLSQITQAEHSVVIVPVTTLMM 120

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +      S  +  LK GD  +  ++   L    Y   +     G F + G  ++IFP+ 
Sbjct: 121 RLPPKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTG 180

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
           + ++  R+ +F +++E I  F P T +    V+ +++     +    PT ++A++  ++ 
Sbjct: 181 V-NMPLRIELFDDEVETIRHFDPETQRSSTPVDAVRLLPAKEF----PTDSSAIEGFRQR 235

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            + R   + K     E + + Q ++ +L           IENY          +   TLF
Sbjct: 236 YRRRFEVIVK-----EPESVYQLVSRNL-------MPAGIENYLPLFF-----DEVATLF 278

Query: 463 EYIPEDSLLF----VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           +Y+P+D+ L     +++S     Q       D  R   L      L +  +   L  E +
Sbjct: 279 DYLPKDTQLVTLGDIEKSARAHLQEVETRYEDR-RVDPLRP----LLAPKELYLLIEELF 333

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
              +P        P            V   ++    V P V   SA  +++     +   
Sbjct: 334 AAFKPLPRYQFIAPQP--------DAVAGAVQIDASVLPEV---SANHKLKQPLIALQDY 382

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLY 603
           A++  R+L +  ++   E L E L 
Sbjct: 383 AERAPRMLFSAESEGRREALLELLS 407



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+     +    V + I     +G 
Sbjct: 761 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGG 820

Query: 584 RILLT---VLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T     +D++  L E  + V   H +++  +   ++ D    +F+VLV  
Sbjct: 821 QVYYLHNNVETIEKCAQDISTLLPEARVVVA--HGQMRERDLERVMSDFYHQRFNVLVCT 878

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +
Sbjct: 879 TIIETGIDVPSANTIIIERADTFGLAQ----LHQLRGRVGRSHHQAYAYLMTPHPKRM 932


>gi|325277315|ref|ZP_08142941.1| transcription-repair coupling factor [Pseudomonas sp. TJI-51]
 gi|324097550|gb|EGB95770.1| transcription-repair coupling factor [Pseudomonas sp. TJI-51]
          Length = 1149

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 122/316 (38%), Gaps = 40/316 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   +  R  +++  +   A +L  E + F P   V  F          
Sbjct: 21  LPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI-VVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E +  I VV   + ++ +          
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPVTTALHRLAPTRFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G +++ +++ + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQTLDVEQMRTRLEATGYRCVDTVYEHGEFAVRGALIDLFPM-GSKLPYRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  V+++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKDEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +      IE Y          E   TLF+Y+P D+ +F  
Sbjct: 237 -------VDFRRSAIFQDLASGIIPAGIEYYLPLFF-----EETSTLFDYLPADTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD 490
            S   + Q +  +  D
Sbjct: 283 -SLPGVEQAAEHFWND 297



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DL E + E  I +   H +++  E  +++ D    +F+VLV   ++  G+D+P    + I
Sbjct: 830 DLAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVI 887

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             ADK G  +    L Q  GR  R+ +     YA  +T + Q    +  +R E
Sbjct: 888 ERADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPTRQKVSADAEKRLE 933



 Score = 40.8 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 4/131 (3%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTF 183
             + ++  + S D   F     +  + DQ AAI  +    +  +   +L+ G  G GKT 
Sbjct: 579 ARKGYAFADPSADYATFSAGFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTE 638

Query: 184 T---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
                A +     R   V+ P  +LA Q Y+ F++ F    V   V        E     
Sbjct: 639 VAMRAAFIAVHSGRQVAVLVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAA 698

Query: 241 TDTYIEKESSI 251
            D    K   +
Sbjct: 699 ADLAEGKIDIL 709


>gi|54293927|ref|YP_126342.1| transcription-repair coupling factor [Legionella pneumophila str.
           Lens]
 gi|53753759|emb|CAH15217.1| Transcription-repair coupling factor [Legionella pneumophila str.
           Lens]
          Length = 1153

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/502 (15%), Positives = 167/502 (33%), Gaps = 65/502 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +A+  +      +++  + + A+QL  E + F   N            Q  
Sbjct: 20  LYGSSLALALAEYCQQTPGIKLLITQDNLCASQLQDELQFFLNPNQN---------TQEL 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
            + P  +T    + S ++ I   R      + +  + I++SS S +   +   E  +Q  
Sbjct: 71  LFFPDWETLPYDQFSPHQDIISERLYTLSRVQQITNGIIISSASTLMHRLSPPEFLNQYA 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + LK G  ++     + L +  Y   +  +  G + + G  I+++P     + +R+ +F 
Sbjct: 131 LMLKEGQKLDLNSFRNQLQQAGYHCVNKVLEHGEYALRGSIIDVYPM-GSGLPFRIELFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE + EF P T + I  +  I +     +              + +L  R    E   
Sbjct: 190 DEIESLREFDPETQRTIEKINQIHLLPAREFPLNE----------QSQLHFRRAFRESFP 239

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                           E +        IE Y          +   T F+Y+P ++ + + 
Sbjct: 240 GNPSH-------CPIYEAISNNQFPSGIEYYLPLFF-----DKTVTFFDYLPANAKICLI 287

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD-NRPLRFEEWNCLRPTTIVVSATPG 533
           E           +R    R               D +RP+   + NC    T +++    
Sbjct: 288 E--EIQENAERFWRELNERYEQRR---------HDVSRPILPPD-NCFINPTELLTKA-N 334

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSA----RTQVEDVYDEINLAAQQGLRILLTV 589
            +E    Q  +  +     G ++  +         R  +E +       +    R L+ V
Sbjct: 335 HYE----QVRLYHKPSEKKGALNFNIAKAPQLPIDRKNIEPLCQLSEYCSDPTRRYLIVV 390

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            +    E L + L   +I            +      D    +  + +    L  G ++ 
Sbjct: 391 ESAGRREVLLDLLKSSHII----------PKTQNSWLDFIYDESPINITTGPLIYGCELT 440

Query: 650 ECGLVAILDADKEGFLRSKTSL 671
           +  +V I+++   G   +    
Sbjct: 441 DKQIVIIVESQLFGEQSTPQRR 462



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 68/176 (38%), Gaps = 11/176 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-DVYDEINLAAQQGL 583
            + ++ATP    L      I +  +  T            + + +  + + I     +G 
Sbjct: 754 ILSMTATPIPRTLNMAMAGIRDISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGG 813

Query: 584 RILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T  R+ +DL   + E  I+    H +++  +   I+ D    +F+VLV  
Sbjct: 814 QVFYLHNNVQTIERVCQDLEALVPEAKIQSA--HGQMRERQLERIMSDFYHHRFNVLVCT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +           K
Sbjct: 872 TIIETGIDIPTANTIIIDRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNEK 923



 Score = 43.5 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 146 DYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            +  + DQ  AI Q++K + S R   +L+ G  G GKT      A V     +   ++AP
Sbjct: 601 PFTETPDQLQAIEQIIKDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAP 660

Query: 202 NKILAAQLYSEFKNFFPHNAV 222
             +LA Q +  F++ F    V
Sbjct: 661 TTLLAGQHFESFRDRFAEFPV 681


>gi|156741461|ref|YP_001431590.1| transcription-repair coupling factor [Roseiflexus castenholzii DSM
           13941]
 gi|156232789|gb|ABU57572.1| transcription-repair coupling factor [Roseiflexus castenholzii DSM
           13941]
          Length = 1246

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 80/544 (14%), Positives = 166/544 (30%), Gaps = 91/544 (16%)

Query: 157 IAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           + +L+  + S    +L +    G+ +T  +A V      P + +      A + Y + + 
Sbjct: 22  VQELMATLRSCAGARLHIAPAPGAARTPLVAAVAVNAAAPMVYVVSTTDAALRAYDDLRQ 81

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER------ 269
           +   + V  F             P  D    +  S    +   R    R L         
Sbjct: 82  WLGDDRVVIF-------------PAGDALPYEHMSTGSDVLAARMRVLRRLAAFVAADGM 128

Query: 270 NDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
              IV    + +    + +      ++L+ G      +L+  L+   Y+        G  
Sbjct: 129 PSVIVAPVKALMQPTLTPDELRTGSIRLERGVPCLLDDLMERLIDLGYRYAPTVEEPGEV 188

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
              G  I++FP   +D+  R+  FG++I+ +  F PLT +    +    I     +    
Sbjct: 189 NRRGGIIDVFPP-GDDLPLRIEFFGDEIDSLRRFDPLTQRSEAQISAAIIDPPHEF---- 243

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
           P    A          R+  ++      EA     R     E ++     +    ++ + 
Sbjct: 244 PLWQRAAAL------ERMRNIDTSTLRREALDEWLR---AFEHIQRGERFEGRALFAPFF 294

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
             R+  + P TL  ++P  +++ ++++ +     + +      R+    + G  LP+   
Sbjct: 295 --RDAMDAPATLLRHLPSGAIVALNDALLLAQHAAELDHQAETRRRQQIDAG-ELPAAF- 350

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG------IIVEQIIRPTGLVDPPVEIRS 563
             P  +  W+ L       S T   +   +           V       G    P   R 
Sbjct: 351 --PRPYLRWHELIAQAE--SLTLADFSNNERPIWDALLPDPVLSDAFQQGNGAEPTIPRP 406

Query: 564 A------------------------RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
           A                          Q+  + ++I      G R+++        ++L 
Sbjct: 407 APDSSDARFRLHLLPERLFLPADLFGGQIRRLVEDIVERLHAGERVIVVTPQAARLQELV 466

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
               +R+I      S    +                      L  G  +P   L    D+
Sbjct: 467 AEGMQRDIEPAVDPSLFTAIH-------------------GSLDAGFRLPALRLTLFSDS 507

Query: 660 DKEG 663
           +  G
Sbjct: 508 EIFG 511



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 67/197 (34%), Gaps = 19/197 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV-----EDVYDEINLA 578
            I ++ATP    L           IR   ++D P E R   +T V       + + I   
Sbjct: 813 VITLTATPIPRTLHMALAG-----IRDLSVIDTPPEDRIPIKTYVLPYDENLIREAILRE 867

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVL 636
             +G ++       +    + + L +     R    H ++   +   ++ D   G+ DVL
Sbjct: 868 LDRGGQVYFVHNRVQSIYYVADRLRQLVPEARIAVGHGQLDERQLERVMLDFFTGRDDVL 927

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  GLD+P    + I DA   G  +    L Q  GR  R              + 
Sbjct: 928 VCTTIIESGLDVPNANTIIIDDATHFGLAQ----LYQLRGRVGRGTQRAYAYLFYRSERP 983

Query: 697 IQLAIDETTRRREKQLE 713
                 E  R +  Q  
Sbjct: 984 STPEAQE--RLQAIQEA 998


>gi|331086145|ref|ZP_08335227.1| hypothetical protein HMPREF0987_01530 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406304|gb|EGG85818.1| hypothetical protein HMPREF0987_01530 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 1113

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 112/266 (42%), Gaps = 20/266 (7%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A I ++         +  + G  GS KT     +    +   +++   +  A Q+Y E++
Sbjct: 12  AEIEEIQNEKKKEAGLIQITGCVGSQKTHLTCALGSDCKYK-LIVTSGESKAKQMYEEYR 70

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
             F    V  +             P  D          +Q+   R    ++LL    C V
Sbjct: 71  --FLKETVYLY-------------PAKDLLFYHADLRGKQLVSSRMETIQALLLGEGCTV 115

Query: 275 VSSVSC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           +++    +  +  +E+  + +  LK+GD ++ +++   L    Y+R+      G F V G
Sbjct: 116 ITTFDAFMDSLLPIETIRERVFSLKVGDIIDFEKVQKDLTLLGYEREVQIEGPGQFAVRG 175

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++++P   E+V  R+ ++ ++I+ I  F   + + I N+E I IY  S ++  +    
Sbjct: 176 GILDVYP-LTEEVPVRIELWDDEIDSIRTFDVESQRSIENLEEITIYPASEFMDEKTKRV 234

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEA 419
           + + Y   E    L+ LE+  RL+E 
Sbjct: 235 SFLDYFPRE--DTLLFLEEPARLIEQ 258



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 79/190 (41%), Gaps = 16/190 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +  +    L +PP++    +T V     E V + I    
Sbjct: 715 VLTLTATPIPRTLHMSLIGIRDMSV----LEEPPMDRMPIQTYVMEYNDEMVREAIEREL 770

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++       +  +++ + + +      V + H +++  +   I+ D   G+ DVL+
Sbjct: 771 ARDGQVYYVYNRVQDIDEVADRIQKLVPEANVAFAHGQMREHQLERIMYDFINGEIDVLI 830

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + I DAD+ G L     L   +GR+ R   + ++   D + K +
Sbjct: 831 STTIIETGLDISNANTMIIHDADRLG-LSQLYQLRGRVGRSNRMAYAFLLYKRDKLLKEV 889

Query: 698 QL----AIDE 703
                 AI E
Sbjct: 890 AEKRLSAIRE 899


>gi|84497836|ref|ZP_00996633.1| putative transcriptional-repair coupling factor [Janibacter sp.
           HTCC2649]
 gi|84381336|gb|EAP97219.1| putative transcriptional-repair coupling factor [Janibacter sp.
           HTCC2649]
          Length = 1204

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 94/543 (17%), Positives = 165/543 (30%), Gaps = 91/543 (16%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR------PAIVMAPNKILAAQLY 210
           I   L+         L + V+   +   +A  +E ++       P +V+      A  L 
Sbjct: 17  IHSFLETATGPGTETLDVSVSAGARPALIAAAVERLRATAPDRLPLLVVTATSREAEDLT 76

Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT---RSLL 267
           +        + +  F S+ +    E   PR+DT   + +     + R+ H A+     + 
Sbjct: 77  NALGCVLDPDVIADFPSW-ETLPHERLSPRSDTVGRRLAV----LRRLTHPASVADDDVA 131

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
                +VVS V  +    S+       V L+ G+     E++ +L    Y R D+   RG
Sbjct: 132 HGPLSVVVSPVRAVLQPISIGLGDLTPVALRAGEDHNLDEVVEALAGAAYSRTDLVERRG 191

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYV 386
            F V G  +++FP   E+   RV  +G+ IEEI  F     + +      +        +
Sbjct: 192 EFAVRGGILDVFPP-TEEHPLRVEFWGDTIEEIRWFKVADQRSLEVASHGLWAPPCREVL 250

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
                 + A       L  +L                      L  L    + + +E+ +
Sbjct: 251 LTDAVRDRA-----AALADQLPGAAD----------------LLHKLAAGIAVEGMESLA 289

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL--------- 497
             L          ++ +  P  S +   +      +   +                    
Sbjct: 290 PALVDGME-----SMLDSFPAGSPVVTCDPERVRTRAHDLVATSQEFLEAGWANAAAGNA 344

Query: 498 --AEYGFRLPSC--------MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
              + G  L S          D+       W  L         TP   +LE   G  VE 
Sbjct: 345 VPIDLGKILGSASFWSVGDLRDHAQATEHPWWDL---------TPFVLDLETTDGNAVE- 394

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
               TG  DP       R  +E    ++      G R+L+    +  A+ + E L E  +
Sbjct: 395 ----TGTEDPTA----YRGDIESAASDLRTWTDDGWRVLVATDGQGSAKRIVEVLGEAEV 446

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
             R              +     G   V      L  G       LV + + D  G   +
Sbjct: 447 PARL----------ETALDTFEPGIVHV--TTAQLGRGFVHAASRLVVLTETDLTGTPST 494

Query: 668 KTS 670
             S
Sbjct: 495 GPS 497



 Score = 40.8 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 52/149 (34%), Gaps = 11/149 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     T    PP E     T V     + +   +    
Sbjct: 797 VLAMSATPIPRTLEMAVTGIREMSTLAT----PPEERHPVLTYVGAYEEKQITAAVRREM 852

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     + E     R    H ++      +++ D    KFDVLV
Sbjct: 853 LREGQVFYIHNKVSTIEKAAARIRELVPEARIATAHGKMGEHRLEQVVLDFWENKFDVLV 912

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLR 666
              ++  GLDI     + +  AD+ G  +
Sbjct: 913 CTTIVETGLDISNANTLIVERADRLGLSQ 941


>gi|297157723|gb|ADI07435.1| transcription-repair coupling factor [Streptomyces bingchenggensis
           BCW-1]
          Length = 1200

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 109/276 (39%), Gaps = 19/276 (6%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
              +  + L    + + F +A +  +  RP + +      A  L +  ++  P + V  +
Sbjct: 25  DGGRHHVDLVGPPAARPFAVAALARSAGRPVLAVTATGREAEDLAAALRSLLPPDRVVEY 84

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI---- 281
            S+ +    E   PR+DT   + +     + R+ H            +VV+ V  +    
Sbjct: 85  PSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPRVDDPAAGPVSVVVAPVRSVLQPQ 139

Query: 282 -YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
             G+G +E        L+ G S + +E++  L    Y R ++   RG F V G  +++FP
Sbjct: 140 VKGLGDLEPV-----SLRSGQSADLEEIVDGLAAAAYARVELVEKRGEFAVRGGILDVFP 194

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTPRPTLNTAMKYI 399
              E+   R+  +G+D+EEI  F     + +   E  +        +        A    
Sbjct: 195 P-TEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELLLTEEVRRRAAALA 253

Query: 400 KE--ELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           ++  EL   L ++ +   +   + L   +  D+E+L
Sbjct: 254 EDHPELGELLGKIAEGIAVEGMESLAPVLVDDMELL 289



 Score = 38.5 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 68/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD-EINLAAQQGL 583
            + +SATP    LE     I E     + +  PP E     T V    + +I  A ++ L
Sbjct: 777 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEERQIGAAIRREL 832

Query: 584 ----RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
               ++          +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 833 LREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSENVLEQVVVDFWEKKFDVLV 892

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R        +     K  
Sbjct: 893 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRERGYAYFLYPPEKP- 947

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 948 ---LTETAHERLATIAQHTEMG 966


>gi|169335546|ref|ZP_02862739.1| hypothetical protein ANASTE_01961 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258284|gb|EDS72250.1| hypothetical protein ANASTE_01961 [Anaerofustis stercorihominis DSM
           17244]
          Length = 1150

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 80/476 (16%), Positives = 179/476 (37%), Gaps = 53/476 (11%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
            ++    L GV+ + K       +   +RP I +  + + A + Y    +      + Y+
Sbjct: 20  DKKGSIFLHGVSSNLKDMITVHELYKEKRPVIYILKDDVSAKETYLNLSDILSEKDILYY 79

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
            +           P T  +I    S + ++   R +  ++ +  +  I+V+S++     G
Sbjct: 80  PAK----------PITHEFI---DSHSMELTNKRVNVIKNAVMGSKKIIVTSINAAIEKG 126

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            +      I+  K  D ++  E +  L K  Y R+     +G + V G  +++F    ++
Sbjct: 127 -LFWGKDSIITKKTEDILDIDEFIEILNKFGYAREYEVTGQGAYSVKGGIVDVFIM-GDE 184

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           V  R+  F ++I+ I  F   TG+ I  +    +      +     +N   K ++ +L+ 
Sbjct: 185 VPVRIEFFDDEIDSIRTFDKNTGKSIEKINKFTLVPAKTSLLDYDEINKLNKKVRAKLEK 244

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
            + + E E      + L ++I  D               Y  Y + +       +L + +
Sbjct: 245 AITQNEDEEIDKNYRELYEKIADDTNDTT---------KYIFYASKQT-----KSLID-L 289

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
            +D L+  D+  +     +  ++ +      LAE+G  L   ++N   +F E        
Sbjct: 290 YKDPLIIFDDYSIIKKTYNRFFKENKEELKDLAEHGKMLDIQVNNHF-KFAEAEERFINL 348

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART-----QVEDVYDEINLAAQ 580
                                 +          VE++S+        +  + D I    +
Sbjct: 349 -------------DSLIYFDLSMASNNLFCKDIVEVKSSDNINYVKNINYLIDNIVTYLK 395

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +  ++++T   ++  ++L+E+L   NI   Y H+ VK      +  ++R G  ++L
Sbjct: 396 EDYKVIITYKNEKEKKNLSEFLSNYNID--YTHT-VKEGHVALVKSNIRNG-VNIL 447



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 11/191 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L     GI     I          E          + D IN    +G 
Sbjct: 758 TLTLSATPIPRTLNMSLIGIRDLSTIEKPPKEREETETYVIEYDDYIIKDAINRELSRGG 817

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++     + + AE     L +    ++V + + ++   E  + +      +FDVLV   +
Sbjct: 818 QVFFVYNSVKNAEKTCLKLRKLIPGLKVEFANGQMPERELEKTMFRFLNKEFDVLVCTAI 877

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GL+I     + I    KEG     + L Q  GR  R+  +          K    A+
Sbjct: 878 VENGLNILNANTMII----KEGNNLGLSQLYQLRGRVGRSNKNAYCYVTYEKDK----AL 929

Query: 702 DETTRRREKQL 712
           +E   +R K +
Sbjct: 930 NEVAMKRLKAI 940


>gi|261367666|ref|ZP_05980549.1| transcription-repair coupling factor [Subdoligranulum variabile DSM
           15176]
 gi|282570458|gb|EFB75993.1| transcription-repair coupling factor [Subdoligranulum variabile DSM
           15176]
          Length = 1153

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 78/439 (17%), Positives = 144/439 (32%), Gaps = 44/439 (10%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G+ GSG+    A +   ++RP  ++ P +  A +   +                    
Sbjct: 29  LFGLPGSGRALVYAALCRTLERPLCIVTPGEAEATRFAGDLNTLG--------------- 73

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
            P A  P  D  +        + +  R      L+      V  S   +    + ++   
Sbjct: 74  IPAAVFPARDYVLRPIEGTAREYEYRRLGVLGDLVGGRLQAVCVSEEALTQYTTPKADFC 133

Query: 293 M-IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
                L+ GDS+ + EL S L    Y R+      G F + GD ++++   +  +  R+ 
Sbjct: 134 ANTRTLRPGDSLPRTELTSLLHGAGYTRRTQVDGPGQFSIRGDIVDLYAPDM-KLPVRME 192

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            +G++I+ +  F   T ++   VE I +      +   P    A+          L    
Sbjct: 193 FWGDEIDTMHTFDLTTQRREDPVEKIYVSPAREVLFGAPADAAAL----------LRAFL 242

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
           K+ R  +   LE  +  +L  L+      +++ Y   L  R P   P TL +Y  +D LL
Sbjct: 243 KKQRGQKRTALEVCMAPELAQLDGGAVPVNLDKY---LAVRYP--EPATLLDYF-DDPLL 296

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            ++E                    TL   G                W            T
Sbjct: 297 ILEEPASLREAQRATAYRRGEEITTLLNDGVLAAGLEKLYADAAWLWTQPAR-----CRT 351

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA-RTQVEDVYDEINLAAQQGLRILLTVL 590
             +    +    I  +      +V+ P     A   +V  + +++      G  + +   
Sbjct: 352 ICAENFARSMPDIALK-----EIVNAPAHSLPAWAGEVAHLLEDLQPLCDGGASVTVLAG 406

Query: 591 TKRMAEDLTEYLYERNIRV 609
           T R A  L   L  + + V
Sbjct: 407 TPRAAAGLAADLRVKGLNV 425



 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 12/176 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-----VYDEINLAA 579
            + +SATP    L      I +     + +  PP E +   T V +     V + I    
Sbjct: 761 MLTLSATPIPRTLNMALSGIRDM----STIEQPPFERQPVETYVLEYDEGIVSEAIRKEL 816

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++           +    + +     R    H ++   +   + + L   + DVLV
Sbjct: 817 ARGGQVYYLHNRVDTINECAARIGKMVPGARVGIAHGKMTEEQISSVWQQLLDNEIDVLV 876

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
              L+  G+D+  C  + I +AD+ G L     L   +GR++R   +      D +
Sbjct: 877 CTTLIETGVDVRNCNTLIIENADRMG-LSQLYQLRGRVGRSSRKAYAYFTFTRDKV 931


>gi|254422402|ref|ZP_05036120.1| transcription-repair coupling factor [Synechococcus sp. PCC 7335]
 gi|196189891|gb|EDX84855.1| transcription-repair coupling factor [Synechococcus sp. PCC 7335]
          Length = 1177

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/519 (15%), Positives = 177/519 (34%), Gaps = 68/519 (13%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +L+  +  +++   + G     K    + + +   +P +V+      A +  ++ +   
Sbjct: 17  QELVAKLE-KQQTLTITGAPRLPKGLVSSALAQTQNKPMLVVTATLEEAGRWSAQLEAMG 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN--DCIVV 275
                 Y  S    Y  + + P ++    +   +++ I+   +     L  ++     +V
Sbjct: 76  WATVAFYPTSESSPY--DVFDPESELIWGQLQVLSDLINGKANPENMPLGSKHLGTMAIV 133

Query: 276 SSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           ++   +   +  VE++    +++ +G  +  K+L  SL K  Y++     + G +   GD
Sbjct: 134 TTERALQPHLPPVEAFRPYCLEITLGMELNLKDLGLSLAKLGYEKVSSVEVEGQWSQRGD 193

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I++FP   E +  R+ +FG+++E + EF P   + +  +E + +    +       L  
Sbjct: 194 IIDVFPVAAE-LPVRMELFGDELERLREFDPANQRSLDKIEALLLTTTDYGPLILSALEE 252

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
                    +         G+ +E  R    + +                          
Sbjct: 253 KELLEDLLTEESQETFAATGK-IEGARRFMGLAF-------------------------- 285

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY-----GFRLPSCMD 509
            E P ++ +Y+P+D+L+ +DE    +            R     +        +LPS   
Sbjct: 286 -ESPASILDYLPDDTLVVIDEPAQCLAHAERWIETVEDRWQEALDAFEADVEIQLPSGGL 344

Query: 510 ---NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
              +RP             I +S      EL +    +         L   PV I     
Sbjct: 345 PKVHRPFSQALEEIELFQRIEIS------ELAEEGVGL--------NLASRPVPILP--H 388

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q   + D +     +     L       +  L   L E +   +++ +          I 
Sbjct: 389 QFGKLADILKEERDRKFFPWLISAQPSRSVAL---LQEHDCPAQFIPNPKD----FPAID 441

Query: 627 DLRLGKFDVLVGINLLR--EGLDIPECGLVAILDADKEG 663
            L+  +  + V  + L   EG  +P   +V + D +  G
Sbjct: 442 KLQNQRIPIAVKYSGLAELEGFVLPTFRIVVVTDREFFG 480



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 69/196 (35%), Gaps = 19/196 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E V   I    
Sbjct: 779 VLTLSATPIPRTLYMALSGVREMSLITT----PPPSRRPIKTHLSPYDPEKVRTAIRQEL 834

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G +I   V      E++   + E    VR    H ++   E    +     G  D++V
Sbjct: 835 DRGGQIFYVVPRVEGIEEVAGRIREAVPGVRLAIAHGQMPEGELEATMLTFSNGDADLMV 894

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
              ++  GLDIP    + I D+ K G  +    L Q  GR  R+   +   L      + 
Sbjct: 895 CTTIIESGLDIPRVNTIIIEDSQKFGLSQ----LYQLRGRVGRSGIQAHAWLLFPKQNQL 950

Query: 697 IQLAIDETTRRREKQL 712
              A     R R  Q 
Sbjct: 951 SDKA---RKRLRAIQE 963


>gi|148548800|ref|YP_001268902.1| transcription-repair coupling factor [Pseudomonas putida F1]
 gi|148512858|gb|ABQ79718.1| transcription-repair coupling factor [Pseudomonas putida F1]
          Length = 1149

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 121/316 (38%), Gaps = 40/316 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   +  R  +++  +   A +L  E + F P   V  F          
Sbjct: 21  LPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI-VVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E +  I VV   + ++ +          
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPTRFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G +++ +++   L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPM-GSKLPYRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           N+IE +  F P T + I  V+++++     +   +  +       K   + R        
Sbjct: 187 NEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +      IE Y          E   TLF+Y+P D+ +F  
Sbjct: 237 -------VDFRRSAIFQDLASGIIPAGIEYYLPLFF-----EETSTLFDYLPTDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD 490
            S   + Q +  +  D
Sbjct: 283 -SLPGVEQAAEHFWND 297



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DL E + E  I +   H +++  E  +++ D    +F+VLV   ++  G+D+P    + I
Sbjct: 830 DLAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVI 887

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             ADK G  +    L Q  GR  R+ +     YA  +T + Q    +  +R E
Sbjct: 888 ERADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPTRQKVSADAEKRLE 933



 Score = 40.8 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 4/131 (3%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTF 183
             + ++  + S D   F     +  + DQ AAI  +    +  +   +L+ G  G GKT 
Sbjct: 579 ARKGYAFADPSADYATFSAGFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTE 638

Query: 184 T---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
                A +     R   V+ P  +LA Q Y+ F++ F    V   V        E     
Sbjct: 639 VAMRAAFIAVHSGRQVAVLVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAA 698

Query: 241 TDTYIEKESSI 251
            D    K   +
Sbjct: 699 ADLAEGKIDIL 709


>gi|121605445|ref|YP_982774.1| transcription-repair coupling factor [Polaromonas naphthalenivorans
           CJ2]
 gi|120594414|gb|ABM37853.1| transcription-repair coupling factor [Polaromonas naphthalenivorans
           CJ2]
          Length = 1161

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 75/493 (15%), Positives = 161/493 (32%), Gaps = 59/493 (11%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           + + ++  L    TGS     +A++ +      +   ++  +   A +L  E   F P  
Sbjct: 6   LATGKRYTLPQ-PTGSADALLLARLGQREKAAGKLTAIVTSDASTAQRLMDEMAFFAPDL 64

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
               F  + +    +A+ P  D   E+ +++  +I + R   T +     D ++V + + 
Sbjct: 65  RCALFPDW-ETLPYDAFSPHQDLISERLATL-WRI-QQRDKETGA-----DVVIVPATTA 116

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           +Y +      +    + K+   +++  L + L    Y      +  G + V G  I++FP
Sbjct: 117 LYRLAPPSFLAGYTFEFKVRQKLDETRLKAQLTLAGYSHVTQVVSPGEYAVRGGLIDLFP 176

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
                V +RV +F ++I+ I  F P + + +  V  +++     +              +
Sbjct: 177 M-GSLVPYRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDDA--------R 227

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
            + + R  EL                +   + +    +   IE Y          E   T
Sbjct: 228 AKFRKRWRELLDGDPTK---------SRIYKDMGNGVATAGIEYYLPLFF-----EETAT 273

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           +F+Y+ +++ + +        Q       D +R   L +         D   L  E    
Sbjct: 274 VFDYLGKNATVVLHGDLEPAFQRFWQDTKDRYR---LVK------DAPDRPALPPESLFL 324

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
                     T  +   +      VE +           E+   R   + +      A  
Sbjct: 325 TTEQFY----TRANDYAQLALRGTVEDVADNAQ-FQKLGEMAVVRGAEDPLAGFKRHAKN 379

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
              R+LL   +    E L ++L   N+      S          + D +     + +   
Sbjct: 380 TAHRVLLLAESDGRRESLLDFLRASNVSPPAFDS----------LEDFQTSIEKIGIATA 429

Query: 641 LLREGLDIPECGL 653
            L  G    E  +
Sbjct: 430 ALHTGFSWLEESI 442



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 83/198 (41%), Gaps = 20/198 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R+    V  + + +    ++
Sbjct: 761 VLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRTEGNGV--IREAVLRELKR 818

Query: 582 GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E+    L E L E  I +   H ++   E   +++D    +F+VL+
Sbjct: 819 GGQVYFLHNEVETIENRRQKLEELLPEARIAIA--HGQMPERELERVMKDFVAQRFNVLL 876

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +     YA  +   +
Sbjct: 877 CSTIIETGIDVPSANTILMSRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLMVPDL 929

Query: 698 QLAIDETTRRRE--KQLE 713
           +    + ++R +  +Q+E
Sbjct: 930 EGLTKQASQRLDAIQQME 947


>gi|313499733|gb|ADR61099.1| Mfd [Pseudomonas putida BIRD-1]
          Length = 1141

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 121/316 (38%), Gaps = 40/316 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   +  R  +++  +   A +L  E + F P   V  F          
Sbjct: 13  LPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPF---------- 62

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI-VVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E +  I VV   + ++ +          
Sbjct: 63  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPTRFLLGSS 119

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G +++ +++   L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 120 LVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPM-GSKLPYRIDLFD 178

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           N+IE +  F P T + I  V+++++     +   +  +       K   + R        
Sbjct: 179 NEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRF----KARFRERFD------ 228

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +      IE Y          E   TLF+Y+P D+ +F  
Sbjct: 229 -------VDFRRSAIFQDLASGIIPAGIEYYLPLFF-----EETSTLFDYLPTDTQVF-- 274

Query: 475 ESHVTIPQISGMYRGD 490
            S   + Q +  +  D
Sbjct: 275 -SLPGVEQAAEHFWND 289



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DL E + E  I +   H +++  E  +++ D    +F+VLV   ++  G+D+P    + I
Sbjct: 822 DLAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVI 879

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             ADK G  +    L Q  GR  R+ +     YA  +T + Q    +  +R E
Sbjct: 880 ERADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPTRQKVSADAEKRLE 925



 Score = 40.8 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 4/131 (3%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTF 183
             + ++  + S D   F     +  + DQ AAI  +    +  +   +L+ G  G GKT 
Sbjct: 571 ARKGYAFADPSADYATFSAGFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTE 630

Query: 184 T---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
                A +     R   V+ P  +LA Q Y+ F++ F    V   V        E     
Sbjct: 631 VAMRAAFIAVHSGRQVAVLVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAA 690

Query: 241 TDTYIEKESSI 251
            D    K   +
Sbjct: 691 ADLAEGKIDIL 701


>gi|26988872|ref|NP_744297.1| transcription-repair coupling factor [Pseudomonas putida KT2440]
 gi|24983679|gb|AAN67761.1|AE016407_5 transcription-repair coupling factor [Pseudomonas putida KT2440]
          Length = 1149

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 121/316 (38%), Gaps = 40/316 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   +  R  +++  +   A +L  E + F P   V  F          
Sbjct: 21  LPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI-VVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E +  I VV   + ++ +          
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPTRFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G +++ +++   L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPM-GSKLPYRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           N+IE +  F P T + I  V+++++     +   +  +       K   + R        
Sbjct: 187 NEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +      IE Y          E   TLF+Y+P D+ +F  
Sbjct: 237 -------VDFRRSAIFQDLASGIIPAGIEYYLPLFF-----EETSTLFDYLPTDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD 490
            S   + Q +  +  D
Sbjct: 283 -SLPGVEQAAEHFWND 297



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DL E + E  I +   H +++  E  +++ D    +F+VLV   ++  G+D+P    + I
Sbjct: 830 DLAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVI 887

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             ADK G  +    L Q  GR  R+ +     YA  +T + Q    +  +R E
Sbjct: 888 ERADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPTRQKVSADAEKRLE 933



 Score = 40.8 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 4/131 (3%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTF 183
             + ++  + S D   F     +  + DQ AAI  +    +  +   +L+ G  G GKT 
Sbjct: 579 ARKGYAFADPSADYATFSAGFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTE 638

Query: 184 T---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
                A +     R   V+ P  +LA Q Y+ F++ F    V   V        E     
Sbjct: 639 VAMRAAFIAVHSGRQVAVLVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAA 698

Query: 241 TDTYIEKESSI 251
            D    K   +
Sbjct: 699 ADLAEGKIDIL 709


>gi|307609748|emb|CBW99260.1| transcription-repair coupling factor [Legionella pneumophila 130b]
          Length = 1153

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 78/502 (15%), Positives = 167/502 (33%), Gaps = 65/502 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +A+  +      +++  + + A+QL  E + F   N            Q  
Sbjct: 20  LYGSSLALALAEYCQQTPGIKLLITQDNLCASQLQDELQFFLNPNQN---------TQEL 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
            + P  +T    + S ++ I   R      + +  + I++SS S +   +   E  +Q  
Sbjct: 71  LFFPDWETLPYDQFSPHQDIISERLYTLSRVQQITNGIIISSASTLMHRLSPPEFLNQYA 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + LK G  ++     + L +  Y   +  +  G + + G  I+++P     + +R+ +F 
Sbjct: 131 LMLKEGQKLDLNLFRNQLQQAGYHCVNKVLEHGEYALRGSIIDVYPM-GSGLPFRIELFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE + EF P T + I  +  I +     +              + +L  R    E   
Sbjct: 190 DEIESLREFDPETQRTIEKINQIHLLPAREFPLNE----------QSQLHFRRAFRESFP 239

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                           E +        IE Y          +   T F+Y+P ++ + + 
Sbjct: 240 GNPSH-------CPIYEAISNNQFPSGIEYYLPLFF-----DKTVTFFDYLPANAKICLI 287

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD-NRPLRFEEWNCLRPTTIVVSATPG 533
           E           +R    R               D +RP+   + NC    T +++    
Sbjct: 288 E--EIQENAERFWRELNERYEQRR---------HDVSRPILPPD-NCFINPTELLTKA-N 334

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSA----RTQVEDVYDEINLAAQQGLRILLTV 589
            +E    Q  +  +     G ++  +         R  +E +       +    R L+ V
Sbjct: 335 HYE----QVRLYHKPSEKKGALNFNIAKAPQLPIDRKNIEPLCQLSEYCSDPTRRYLIVV 390

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            +    E L + L   +I            +      D    +  + +    L  G ++ 
Sbjct: 391 ESAGRREVLLDLLKSSHII----------PKTQNSWLDFIYDESPINITTGPLIYGCELT 440

Query: 650 ECGLVAILDADKEGFLRSKTSL 671
           +  +V I+++   G   +    
Sbjct: 441 DKQIVIIVESQLFGEQSTPQRR 462



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 68/176 (38%), Gaps = 11/176 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-DVYDEINLAAQQGL 583
            + ++ATP    L      I +  +  T            + + +  + + I     +G 
Sbjct: 754 ILSMTATPIPRTLNMAMAGIRDISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGG 813

Query: 584 RILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T  R+ +DL   + E  I+    H +++  +   I+ D    +F+VLV  
Sbjct: 814 QVFYLHNNVQTIERVCQDLEALVPEAKIQSA--HGQMRERQLERIMSDFYHHRFNVLVCT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +           K
Sbjct: 872 TIIETGIDIPTANTIIIDRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNEK 923



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 146 DYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            +  + DQ  AI Q++K + S R   +L+ G  G GKT      A V     +   ++AP
Sbjct: 601 PFTETPDQLQAIEQIIKDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAP 660

Query: 202 NKILAAQLYSEFKNFFPHNAV 222
             +LA Q +  F++ F    V
Sbjct: 661 TTLLAGQHFESFRDRFAEFPV 681


>gi|260219542|emb|CBA26387.1| Transcription-repair-coupling factor [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 1159

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/511 (15%), Positives = 168/511 (32%), Gaps = 69/511 (13%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           K   L   TGS     +A++        +P  V+  +   A +L  E   F P      F
Sbjct: 10  KRFTLPRPTGSADAMLLARLGTREKAAGKPMTVVTADASDAQRLLDEIAFFAPDMRCALF 69

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    + + P  D   E+ +++  +I +      R      D ++V + + +Y + 
Sbjct: 70  PDW-ETLPYDTFSPHQDLISERLATL-WRISQ------RDKENGADVVIVPATTALYRLA 121

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                +    + K+   +++  L S L    Y      +  G + V G  I++FP     
Sbjct: 122 PPSFLAGYTFEFKVKQKLDEARLKSQLTLAGYSHVTQVVSPGEYAVRGGLIDLFPM-GSL 180

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           V +RV +F ++I+ I  F P + + +  V  +++     +              + + + 
Sbjct: 181 VPYRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDDA--------RAKFRS 232

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           R  EL                +   + +    +   IE Y          E   T+F+Y+
Sbjct: 233 RWRELLDGDPTK---------SRIYKDIGNGVATAGIEYYLPLFF-----EDTATVFDYV 278

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG---FRLPSCMDNRPLRFEEWNCLR 522
             D+ + +        Q       D +R   L +       LP   ++  L  E++    
Sbjct: 279 GADATVVLHGDLEPAFQRFWQDTKDRYR---LVQGDPDRPVLPP--ESLFLGTEQFYAKA 333

Query: 523 PT--TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
                + + A     E  +   +    ++R T      ++  +  TQ             
Sbjct: 334 NEHAQLAIRAQSEGTEFSEVSPLPELGVVRGTEEPLALLKQHARNTQ------------- 380

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
              R+L+   +    E L ++L           S          +++    K  + +  +
Sbjct: 381 --QRLLVLAESDGRRESLLDFLRASQFSPPAFDS----------LQEFLDSKEPIGIATS 428

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSL 671
            L +G    E G+  I + +      +    
Sbjct: 429 GLTKGFSWLEAGIDLITETELFAAGPTTRRR 459



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 71/182 (39%), Gaps = 15/182 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R+    V  + + +    ++
Sbjct: 759 VLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRTEGNGV--IREAVLRELKR 816

Query: 582 GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E+    L E L E  I V   H ++   +   ++RD    ++++L+
Sbjct: 817 GGQVYFLHNEVETIENRRQKLEELLPEARIAVA--HGQMPERQLEAVMRDFVAQRYNLLL 874

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           + +
Sbjct: 875 CSTIIETGIDVPSANTIVMSRADKFGLAQ----LHQLRGRVGRSHHQAYAYLMVPDIEGL 930

Query: 698 QL 699
             
Sbjct: 931 TK 932


>gi|312792831|ref|YP_004025754.1| transcription-repair coupling factor [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179971|gb|ADQ40141.1| transcription-repair coupling factor [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 1141

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 77/452 (17%), Positives = 167/452 (36%), Gaps = 45/452 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              L + +  +    ++ GV   GK   +  + E   + A+ +       A+L  E +  
Sbjct: 11  FKTLEEIVAKKSLPVVVTGVGEMGKALVVKSLCEKFNKKALFIT---TQRAKLEWERRFK 67

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              ++V            E   P   ++ +   S   +I++      +   +  D ++++
Sbjct: 68  NLFSSVVSLQ--------ERENPYVASFAKSRDSEITRIEQ----FVKIFEDGFDVLILT 115

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + +       ++    +   L  G  ++ + L+  L+   Y+R      +G F   G  +
Sbjct: 116 AQNLFEKYTDLKFDCIL---LTEGLDIQLETLIEKLLTFGYERVKTVEKKGQFSQKGGIV 172

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +I+P        R+  FG+ I+ I  F   T +    +++IKIY    +   +   +  +
Sbjct: 173 DIYPV-ASTYPVRIEFFGDTIDTIRLFDVETQKSFEKIDSIKIYKAIEWDL-QEDFSEGL 230

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           K+IK++ K    +++ + +    + LE+     +E +        +E    Y       +
Sbjct: 231 KHIKDDYK----KMKSKLKEESRKNLEETFKEVVEGIRL-----DVERLYPYYY-----Q 276

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              ++ +   E  L+FVDE       +    +      + L E GF LP   D      +
Sbjct: 277 QFLSVIDIFSE-CLIFVDEYSQVYNSLKAFEQEMREMFSDLLEKGFVLPRMADCYYTVDK 335

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
                  T I+ +      E+E          +R     +   E+ +   Q E + D++ 
Sbjct: 336 ILQKFSSTIILQTFASSIKEIE----------LREIISFNFFRELPTYNAQKEVLIDDLK 385

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
               +   I +   ++   EDL E L + NI+
Sbjct: 386 YYMSKDYTINIFTGSRTSLEDLEEALLKENIQ 417



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 8/175 (4%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I        PV+          + + I     +G 
Sbjct: 756 VLTLTATPIPRTLNMALLGIRDLSVIEDPPEDRYPVQTFVLEYNERIIKEAILREISRGG 815

Query: 584 RILLTVLTKRMAEDLTEYLYER---NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           ++       +  +++   L      +I+V   H ++   E   ++ D   G++DVLV   
Sbjct: 816 QVFYLYNRIKDIQEVAAKLQNLVGDSIKVACAHGQMPEEELERVLLDFIEGRYDVLVCTT 875

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           ++  G+D+P    + + D+D+ G  +    L Q  GR  R+       +     K
Sbjct: 876 IIESGVDMPNVNTLIVEDSDRLGLAQ----LYQLRGRVGRSNRLAYAYFTFRKDK 926


>gi|258542202|ref|YP_003187635.1| DNA helicase transcription-repair coupling factor [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633280|dbj|BAH99255.1| DNA helicase transcription-repair coupling factor [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636339|dbj|BAI02308.1| DNA helicase transcription-repair coupling factor [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639392|dbj|BAI05354.1| DNA helicase transcription-repair coupling factor [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642448|dbj|BAI08403.1| DNA helicase transcription-repair coupling factor [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645503|dbj|BAI11451.1| DNA helicase transcription-repair coupling factor [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648556|dbj|BAI14497.1| DNA helicase transcription-repair coupling factor [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651609|dbj|BAI17543.1| DNA helicase transcription-repair coupling factor [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654600|dbj|BAI20527.1| DNA helicase transcription-repair coupling factor [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 1158

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 89/498 (17%), Positives = 176/498 (35%), Gaps = 60/498 (12%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +++++  + GV        +A+     + P + +A N    A+L        P   V  F
Sbjct: 7   AQKRIATVWGVPEGYDALLLARRARDHKGPVLHIARNDAAMARLNDMLAFVAPDVDVLRF 66

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE----RNDCIVVSSVSCI 281
                        P  D       S N  I   R S    LLE    R   ++ +  + +
Sbjct: 67  -------------PAWDCLPYDRVSPNPAIVAERVSTLTRLLEPAKGRPRLVLATVNAVV 113

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +++    + ++ G+S++Q  L+  L+   Y R D  +  G F   G   +++P+
Sbjct: 114 QRVAPRKTFEGQSLSIRTGESLDQGFLIELLIANGYTRTDTVMEAGEFATRGGIFDLYPA 173

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
              +   R+ +FG+++E I  F P + +     + + +   S +   + +++        
Sbjct: 174 GAGE-PLRLDLFGDEVENIRAFDPGSQRSTAKRDGLTLCPVSEFSLDKESISRF------ 226

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
               R    +  G    +  L        E +        IE++              TL
Sbjct: 227 ----RTGWRDAFGPAATSDPL-------YEHISDGRRHPGIEHWLPLFHDHLE-----TL 270

Query: 462 FEYIPEDSLLFVDESH-VTIPQISGMYRGDFHRKATLAEYG--FR-LPSCMDNRPLRFEE 517
           F+Y+P+ ++    ++  V   ++  +      R+  + E    +R LP       L  + 
Sbjct: 271 FDYLPDVAVSLEHQAEDVLKSRLEMIEDHYQARRQPVREGEIPYRPLPP--HLLYLDEKG 328

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEIN 576
           W+       VV+ +P     +      V+   RP G +   +   + R QV  +  D++ 
Sbjct: 329 WDACLSRVPVVAFSP---YAQPDGAGGVDVGGRP-GKMFSKIVPGAQREQVFTLLGDQVK 384

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             AQ   R  +   TK   E +T  L E  +         +T E  E     + G   +L
Sbjct: 385 EWAQVKRRAFVAAWTKGSRERITTLLREHGVP-------TQTYETWEQAHKAKPGPVGLL 437

Query: 637 VGINLLREGLDIPECGLV 654
                L  G    +   V
Sbjct: 438 --TLGLERGFVADDLAFV 453



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 11/170 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             + +SATP    L+     + E  +    PT  +     I    + V  + + I     
Sbjct: 755 HVLTLSATPLPRTLQLSLSGVREMSLIATPPTDRLAVRTFIMPFDSVV--IREAIQRERF 812

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G +I          + L E L       R +  H  +   E   ++ +   GK+D+L+ 
Sbjct: 813 RGGQIFCVAPRIEDLDRLAERLTAIVPDARLIQAHGRLSATELERVMTEFSDGKYDILLS 872

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            N++  GLD+P    + I  AD  G  +    L Q  GR  R        
Sbjct: 873 TNIVESGLDMPAVNTLIIHRADMFGLGQ----LYQLRGRVGRGKQRGYAY 918


>gi|52841189|ref|YP_094988.1| transcription repair coupling factor [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628300|gb|AAU27041.1| transcription repair coupling factor [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 1153

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 78/502 (15%), Positives = 167/502 (33%), Gaps = 65/502 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +A+  +      +++  + + A+QL  E + F   N            Q  
Sbjct: 20  LYGSSLALALAEYCQQTPGIKLLITQDNLCASQLQDELQFFLNPNQN---------TQEL 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
            + P  +T    + S ++ I   R      + +  + I++SS S +   +   E  +Q  
Sbjct: 71  LFFPDWETLPYDQFSPHQDIISERLYTLSRVQQITNGIIISSASTLMHRLSPPEFLNQYA 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + LK G  ++     + L +  Y   +  +  G + + G  I+++P     + +R+ +F 
Sbjct: 131 LMLKEGQKLDLNSFRNQLQQAGYHCVNKVLEHGEYALRGSIIDVYPM-GSGLPFRIELFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE + EF P T + I  +  I +     +              + +L  R    E   
Sbjct: 190 DEIESLREFDPETQRTIEKINQIHLLPAREFPLNE----------QSQLHFRRAFRESFP 239

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                           E +        IE Y          +   T F+Y+P ++ + + 
Sbjct: 240 GNPSH-------CPIYEAISNNQFPSGIEYYLPLFF-----DKTVTFFDYLPANAKICLI 287

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD-NRPLRFEEWNCLRPTTIVVSATPG 533
           E           +R    R               D +RP+   + NC    T +++    
Sbjct: 288 E--EIQENAERFWRELNERYEQRR---------HDVSRPILPPD-NCFINPTELLTKA-N 334

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSA----RTQVEDVYDEINLAAQQGLRILLTV 589
            +E    Q  +  +     G ++  +         R  +E +       +    R L+ V
Sbjct: 335 HYE----QVRLYHKPSEKKGALNFNIAKAPQLPIDRKNIEPLRQLSEYCSDPTRRYLIVV 390

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            +    E L + L   +I            +      D    +  + +    L  G ++ 
Sbjct: 391 ESAGRREVLLDLLKSSHII----------PKTQNSWLDFIYDESPINITTGPLIYGCELT 440

Query: 650 ECGLVAILDADKEGFLRSKTSL 671
           +  +V I+++   G   +    
Sbjct: 441 DKQIVIIVESQLFGEQSTPQRR 462



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 68/176 (38%), Gaps = 11/176 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-DVYDEINLAAQQGL 583
            + ++ATP    L      I +  +  T            + + +  + + I     +G 
Sbjct: 754 ILSMTATPIPRTLNMAMAGIRDISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGG 813

Query: 584 RILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T  R+ +DL   + E  I+    H +++  +   I+ D    +F+VLV  
Sbjct: 814 QVFYLHNNVQTIERVCQDLEALVPEAKIQSA--HGQMRERQLERIMSDFYHHRFNVLVCT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +           K
Sbjct: 872 TIIETGIDIPTANTIIIDRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNEK 923



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 146 DYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            +  + DQ  AI Q++K + S R   +L+ G  G GKT      A V     +   ++AP
Sbjct: 601 PFTETPDQLQAIEQIIKDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAP 660

Query: 202 NKILAAQLYSEFKNFFPHNAV 222
             +LA Q +  F++ F    V
Sbjct: 661 TTLLAGQHFESFRDRFADFPV 681


>gi|269794110|ref|YP_003313565.1| transcription-repair coupling factor Mfd [Sanguibacter keddieii DSM
           10542]
 gi|269096295|gb|ACZ20731.1| transcription-repair coupling factor Mfd [Sanguibacter keddieii DSM
           10542]
          Length = 1212

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 95/539 (17%), Positives = 186/539 (34%), Gaps = 97/539 (17%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P+G +P  +A  + G  + + +    GV GS              RP +V+      A +
Sbjct: 34  PAGVRPPLLAA-MAGARASDGLVPETGVEGS--------------RPLVVVTATGREADE 78

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L S  + + P++ V    ++ +    E   PR+DT  ++ +       R+ H +    + 
Sbjct: 79  LASALRCYLPYDDVAVLPAW-ETLPHERLSPRSDTVAKRIAVF----RRLAHPSADLGMT 133

Query: 269 RNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
               ++V  V  +      G+G +E        L+  D  +  ++   L    Y R D+ 
Sbjct: 134 GPVRVLVMPVRALLQPVVDGLGDLEPVR-----LETRDRADLADVADRLSAAAYARVDMV 188

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYAN 382
             RG F V G  +++FP   ED   RV  +G ++EEI  F     + +   +  +     
Sbjct: 189 ERRGEFAVRGGILDVFPP-TEDHPLRVEFWGEEVEEIRWFAVADQRSLEIADHGVWAPPC 247

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
              +      + A       L  +L    +                 L+ +    + + +
Sbjct: 248 REMLLTDDVRDRASA-----LVEQLPGAAEM----------------LDKMGAGIAVEGM 286

Query: 443 ENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAE 499
           E+ +  L  R        + + +P+D+L+ + +          +    +       T A 
Sbjct: 287 ESLAPVLVDRMVP-----VLDLVPDDALVVLSDPERVRRRAHDLVATTQEFLAAAWTSAA 341

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA-------TPGSWELEQCQGIIVEQI-IRP 551
            G   P  +D     F+     R     +SA       T   + L+  +    +++ ++ 
Sbjct: 342 AGGSTP--IDLSAASFDTIEDARD----LSARRGLGWWTLSPFGLDNPEDDTDDEVPVQD 395

Query: 552 TGLVDPPV---EIRSARTQVEDVYDEINLAAQQGLRILLTVL----TKRMAEDLTEYLYE 604
                  +   E+ +    V    D++      G R+++T       KRM E L+     
Sbjct: 396 PDADTLRIGAREVEAYHGDVARALDDVRGLQHAGWRLIMTTEGHGPAKRMVEQLSG---- 451

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                    ++       EI  D   G   VLV    L  G   P+  +    ++D  G
Sbjct: 452 ---------ADAPARLVGEITGDPEGGV--VLVTPAPLGPGFVAPDLKIAVFSESDMTG 499



 Score = 45.1 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 72/206 (34%), Gaps = 27/206 (13%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     T    PP E     T V   +D      +  + 
Sbjct: 806 VLAMSATPIPRTLEMAVTGIREMSTLAT----PPEERHPVLTYVGAYDDKQITAAIRREL 861

Query: 581 --QGLRILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
             +G   L  V  K     R A  L E + E  I V   H ++   +   +I D    KF
Sbjct: 862 LREGQ--LFYVHNKVDSIDRTAARLKELVPEARIEVA--HGKMGEHQLERVIMDFWEKKF 917

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           DVLV   ++  GLDI     + +  AD  G  +    L Q  GR  R  +     +    
Sbjct: 918 DVLVCTTIIETGLDISNANTLILERADMLGLSQ----LHQLRGRVGRGRDRAYAYFLYPP 973

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHN 719
            +     + ET   R   +  N    
Sbjct: 974 ERP----LTETAHDRLATIAANTDLG 995


>gi|209525598|ref|ZP_03274136.1| transcription-repair coupling factor [Arthrospira maxima CS-328]
 gi|209493931|gb|EDZ94248.1| transcription-repair coupling factor [Arthrospira maxima CS-328]
          Length = 1167

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 83/525 (15%), Positives = 173/525 (32%), Gaps = 90/525 (17%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
           A+LL  ++ ++ +  L G+    K  T + + +      +V+      A +  ++ +   
Sbjct: 17  AELLTKLNQQQALH-LNGLPRVPKGLTASALAQEAGLNLLVITATLEEAGRWSAQLEVMG 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-----DC 272
                 Y  S    Y+P               S +E++   +      L+ RN       
Sbjct: 76  WQTVHFYPTSEASPYEP---------------SYSEEMVWGQMQVLADLVARNTGKADPV 120

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            VV++   +   +  V  +    + LK+G + E K +   L +  Y+R  +    G +  
Sbjct: 121 AVVATERSLQPHLPPVSDFQSYCLTLKLGMTWEGKTIDEKLAQLGYQRVAVVETEGQWSR 180

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD +++FP    ++  R+  FG+++E I E  P+T + +  VE + +   +        
Sbjct: 181 RGDIVDVFPV-ASELPVRLEWFGDELERIRELDPVTQRSLDRVEQLILTPTNFAPIIEAN 239

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           L+ + + ++     ++ E +                                    +L G
Sbjct: 240 LSLSTETLETLKSAQISETKTG--------------------------------LSHLLG 267

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG----DFHRKATLAEYG---FRL 504
                 P +L +Y+PE +L  +DE           +        + +  L         +
Sbjct: 268 LAY-HKPASLIDYLPELTLAVIDEPDQCAGHGDRWFEHIDEQWQNEQGKLVTAEGISVEI 326

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           P+                   + +S      EL   +  +++       L   PV +   
Sbjct: 327 PAIHQCFRESLATVENRFDR-LYLS------ELADYKSPLIQASTASINLASRPVPVTP- 378

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-----HSEVKTL 619
             Q   + + I     +   + L       +  L   L E +   +++     +  + +L
Sbjct: 379 -HQFGKIAEVIRQQRDRQFTVFLISAQPSRSVAL---LSEHDCPSKFIPNPRDYPAIDSL 434

Query: 620 ERIEIIRDLRLGKFDVLVGINLLR-EGLDIPECGLVAILDADKEG 663
            R   I          L    L   EG  +P   LV I D +  G
Sbjct: 435 IRNTPI---------ALKYTGLAELEGFILPTFRLVIITDREFYG 470



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 73/196 (37%), Gaps = 15/196 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I E  +  T    PP   R  +T +     E +   I    
Sbjct: 769 VLTLTATPIPRTLYMALSGIREMSLITT----PPPSRRPIQTHLGPLNQETIRAAICQEL 824

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      E+ +  + E     R    H +++  E   I+     G+ D+LV
Sbjct: 825 DRGGQVFYVVPRIEGIEEKSAAIREMVPSARLAIAHGQMEAGELESIMLTFSAGEADILV 884

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + + DA K G  +    L Q  GR  R            +    
Sbjct: 885 CTTIIESGLDIPRVNTILVEDAHKFGLGQ----LYQLRGRVGRAGVQAHAWLFYPVKGDG 940

Query: 698 QLAIDETTRRREKQLE 713
           Q A+ E   +R + ++
Sbjct: 941 QAALTEDAVKRLRAIK 956


>gi|317495443|ref|ZP_07953812.1| transcription-repair coupling factor [Gemella moribillum M424]
 gi|316914502|gb|EFV35979.1| transcription-repair coupling factor [Gemella moribillum M424]
          Length = 1185

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/421 (15%), Positives = 154/421 (36%), Gaps = 32/421 (7%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
             +     + G   + K   +        +  +V+  +K  A +L+              
Sbjct: 15  DKKINNIGIYGQNITTKALEIYNEFVKSNKNVVVITQDKAEAEELF-------------- 60

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG- 283
             S     + E Y+      +++ ++ +  + +       +L+ +   I++  +   Y  
Sbjct: 61  --SLITTLEKETYIYPEIDILKRHTAKSNDLVQNSIKVLENLVSKVPSIIIIPIEASYRT 118

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +   E +     ++ +   +  ++L   LV   Y R D   + G F   G  ++IF S L
Sbjct: 119 LKDPEKFLNTTFEINLDTVINFEDLQKKLVNMGYNRVDSVDVVGEFSKRGSIVDIF-SPL 177

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
            +   R+  F ++++ I  F  +T + +  VE + +Y  + +       +  +  I E L
Sbjct: 178 NEKPIRLDFFDDELDSIRTFDEITQKSLEKVENVTVYPTNDFFLTNEEKDIVVTKILERL 237

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           K   ++ E+  + + +  L+++I    E+   TG    +E++S  +      E   ++ +
Sbjct: 238 KDEKLKQEENYKDI-SDYLQEKI----EIYRATGDFSELESFSNLIY-----EHTFSIAD 287

Query: 464 YIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP 523
           Y  ED ++F D  H    ++  + +             +   + +D+    FE+    + 
Sbjct: 288 YFTEDVVIFFDNYHKITEKVESLRQYFLTNLQE-INRTYIHQNIIDDN--TFEKIQNKKV 344

Query: 524 TTIVVSATP-GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
               +S        +E+   I +  ++          EIR        V   +N   Q+ 
Sbjct: 345 RKYYLSNLKLNKKIIEKSYNIDITDLVYYVNEEYLTKEIREKLDNDYKVLISLNTQKQRD 404

Query: 583 L 583
            
Sbjct: 405 Y 405



 Score = 45.1 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 71/189 (37%), Gaps = 15/189 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI    +I        P++          V + I     +G 
Sbjct: 757 VLTLSATPIPRTLHMSLIGIRDLSVIETPPSERQPIQTFVTAQNNMIVKEAIMNEVSRGG 816

Query: 584 RILLTVLTKRMAEDLTEYLYER----NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          ++  +YL  +    +I + Y H  +   E   I+ D+   K+D+L+  
Sbjct: 817 QVFYVYNRVDSIDE--KYLELKRLLPDINIAYAHGRMTQRELESIMSDVIDRKYDLLITT 874

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + + DAD+ G  +    L Q  GR  R+             K    
Sbjct: 875 TIIETGIDISNVNTLIVEDADRFGLSQ----LYQLRGRVGRSSREAYAYLMYQPFK---- 926

Query: 700 AIDETTRRR 708
           A+ E + +R
Sbjct: 927 ALTENSEKR 935


>gi|297205117|ref|ZP_06922513.1| transcription-repair coupling factor [Lactobacillus jensenii
           JV-V16]
 gi|297149695|gb|EFH29992.1| transcription-repair coupling factor [Lactobacillus jensenii
           JV-V16]
          Length = 1162

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 91/505 (18%), Positives = 176/505 (34%), Gaps = 78/505 (15%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
                 +++  N+  A +L        P   V+YF                 T   + ++
Sbjct: 46  KQNNTLLIIEENENKAQRLVDNLAPLLPEEKVQYFAVDS-------------TLATQRAT 92

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELL 309
            +      R  A   LL   + IVV++   + Y + S +SY++    +K+G   + K++ 
Sbjct: 93  ASPDELAQRIKALHLLLSEENGIVVTTAQGLEYQLNSKDSYTKSNKLIKVGQEYDLKQMN 152

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369
           S LV   Y+++ +    G F V GD ++I+P     +  R+  FG++++ +  F   T +
Sbjct: 153 SWLVASGYRKEALVAKPGEFAVRGDILDIYPLDQA-LPVRIEFFGDEVDTVKSFDVNTQK 211

Query: 370 KIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD 429
            I   + I +   S  +     L  A   IK+E+K  L     E          Q     
Sbjct: 212 SISEKDQINVLPASDRIFESANLKKAHNLIKDEIKESLNPKAAE----------QNFAQV 261

Query: 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE---SHVTIPQISGM 486
           L+ L       +      YL  ++      +L  Y+PE+ L+  ++      T  +I+  
Sbjct: 262 LDELSQGNLPDNYAFLVDYLLPKS-----CSLLSYLPENGLVVFNDWPAIKKTDGEIAAQ 316

Query: 487 YRGDFH----------RKATLAEYGFRLPSCMDNRP-----------LRFEEWN---CLR 522
                            +         L     NR            LRF+++    C  
Sbjct: 317 NASFISDEIKAGLMLNSQKLRLNLTTVLRQSKHNRLYLSLFQKGMGQLRFDDFFNWPCRE 376

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
           P            EL + Q      I++         E RS + Q   +  ++NL     
Sbjct: 377 PEQFFSQMPLIKSELNKYQKQGYTVILQADN------EKRSKQIQSNLIDFDLNLPIVAK 430

Query: 583 LRIL-----LTVLT---------KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            +++     +TV            ++       L+ + +  +     ++  +R+    DL
Sbjct: 431 DKLVEHKLQITVGQFNQGFYLPQLQLLYLTERELFNKQVHKKRKILNLENAQRLRNYNDL 490

Query: 629 RLGKFDVLVGINLLR-EGLDIPECG 652
           + G + V V   + R EG+   +  
Sbjct: 491 KPGDYVVHVNHGIGRFEGIKTLDVD 515



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++    +   P++          + +       +  
Sbjct: 764 VLTLTATPIPRTLHMSMVGVRDLSVMETPPVNRYPIQTYVMEQLPSVIREACLREMARDG 823

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          ++  E+L +     +   +H  +   +  +I+      +FD+LV   +
Sbjct: 824 QIFYLHNRIGDIDETVEHLQQLIPEAKIEAIHGRMSENQMSDILYRFLHKQFDILVTTTI 883

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 884 IETGIDMPNVNTLIIEDADHYG-LSQLYQLRGRIGRSAR 921


>gi|238018751|ref|ZP_04599177.1| hypothetical protein VEIDISOL_00609 [Veillonella dispar ATCC 17748]
 gi|237864517|gb|EEP65807.1| hypothetical protein VEIDISOL_00609 [Veillonella dispar ATCC 17748]
          Length = 1098

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 111/286 (38%), Gaps = 31/286 (10%)

Query: 161 LKGIHS--REKVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEFKNFF 217
           + G+++  R+   ++ G++GS K+F + +     + +P +++  +K        +   F+
Sbjct: 16  VDGLNAFQRKGKSVIYGLSGSQKSFLLNQAFSTGLTKPVVIVVHDKDHKEMWERDLAFFW 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
            +  V  F                 T I +  S+ +Q  +MR  A  +  E    ++ ++
Sbjct: 76  TNIPVLSFPITDHVDF---------TTIAR--SLEDQGAQMRALALLAWQE-PAVVIANA 123

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
                 + S +      +   + D++E+   L  LV   Y+R D    RG F V GD ++
Sbjct: 124 EEVTQYVVSPQYLKGQSLHFSLNDTIERDTALEQLVTIGYERVDQVEQRGHFAVRGDILD 183

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP------- 390
           I+P + E    R+  FG++I+ +  F     + I  +++  +       +          
Sbjct: 184 IYPVNSE-HPIRIEFFGDEIDTLRFFSVENQRSIEQIDSYTVTPFFLGKSDADCTLLSYV 242

Query: 391 TLNTAMKY----IKEELKMRLIELEKEGRLL----EAQRLEQRITY 428
              T +      I+E LK  L E     +      E QR  +    
Sbjct: 243 KEGTLIYDEPGRIQEALKKFLKEDPTHRKNHCDWSELQRTVEATNQ 288



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 82/212 (38%), Gaps = 18/212 (8%)

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVY 572
           +++EW       + +SATP    L      + E  +I        PV+       +  V 
Sbjct: 689 KWKEWANNID-VLTLSATPIPRTLHMSLVGVREMSVINTPPEERLPVQTYVVEYDMNLVA 747

Query: 573 DEINLAAQQGLRILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D I     +G ++   V  +      M E L E L      +   H ++   +  EI+ D
Sbjct: 748 DAIKRELARGGQV-YFVYNRVASINHMGELLEEALPGLRYAIA--HGQMTGRQIEEIMTD 804

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G +DVL+  +++  GLDIP    + I DAD+ G  +    L Q  GR  R+      
Sbjct: 805 FYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQ----LYQMRGRVGRSRRRAYA 860

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
            +     K +  A +    +R K +E   +  
Sbjct: 861 YFMYRPDKMLSEAAE----KRLKAIEEFTELG 888


>gi|291445280|ref|ZP_06584670.1| transcriptional-repair coupling factor [Streptomyces roseosporus
           NRRL 15998]
 gi|291348227|gb|EFE75131.1| transcriptional-repair coupling factor [Streptomyces roseosporus
           NRRL 15998]
          Length = 1184

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 121/345 (35%), Gaps = 45/345 (13%)

Query: 155 AAIAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
            A+A+ +K      +  + L+G  G  + F +A +     R  + +      A  L +  
Sbjct: 21  PALAEAVKAAGDGHRAHVDLVGPPG-ARPFAVAALARQTGRTVLAVTATGREAEDLAAAL 79

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           +   P + V  + S+ +    E   PR+DT   + +     + R+ H            +
Sbjct: 80  RTLLPPDTVAEYPSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPREDDPETGPVSV 134

Query: 274 VVSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           VV+ +  +      G+G +E        L  G S +  E++ +L    Y R ++   RG 
Sbjct: 135 VVAPIRSVLQPQVKGLGDLEPV-----SLAGGQSADLGEVVDALAAAAYSRVELVEKRGE 189

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVT 387
           F V G  +++FP   E+   RV  +G+++EEI  F     + +      +        + 
Sbjct: 190 FAVRGGILDVFPP-TEEHPLRVEFWGDEVEEIRYFKIADQRSLEVAAHGLWAPPCRELLL 248

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
                  A       L     EL +                 L  +    + + +E+ + 
Sbjct: 249 TDQVRERAAV-----LAEAHPELGE----------------LLGKIAEGIAVEGMESLAP 287

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
            L           L + +P+D++  V +      + + +      
Sbjct: 288 VLVDDMEL-----LLDVLPKDAMAIVCDPERVRTRAADLVATSQE 327



 Score = 39.3 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 66/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + +  PP E     T V     + +   I    
Sbjct: 785 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEEKQIGAAIRREL 840

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 841 LREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSEAALEQVVVDFWEKKFDVLV 900

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R  +     +     K  
Sbjct: 901 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRDRGYAYFLYPPEKP- 955

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 956 ---LTETAHERLATIAQHTEMG 974


>gi|256852011|ref|ZP_05557398.1| transcription-repair coupling factor [Lactobacillus jensenii
           27-2-CHN]
 gi|260661420|ref|ZP_05862333.1| transcription-repair coupling factor [Lactobacillus jensenii
           115-3-CHN]
 gi|282933683|ref|ZP_06339041.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1]
 gi|256615423|gb|EEU20613.1| transcription-repair coupling factor [Lactobacillus jensenii
           27-2-CHN]
 gi|260547875|gb|EEX23852.1| transcription-repair coupling factor [Lactobacillus jensenii
           115-3-CHN]
 gi|281302173|gb|EFA94417.1| transcription-repair coupling factor [Lactobacillus jensenii 208-1]
          Length = 1162

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 91/505 (18%), Positives = 176/505 (34%), Gaps = 78/505 (15%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
                 +++  N+  A +L        P   V+YF                 T   + ++
Sbjct: 46  KQNNTLLIIEENENKAQRLVDNLAPLLPEEKVQYFAVDS-------------TLATQRAT 92

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELL 309
            +      R  A   LL   + IVV++   + Y + S +SY++    +K+G   + K++ 
Sbjct: 93  ASPDELAQRIKALHLLLSEENGIVVTTAQGLEYQLNSKDSYTKSNKLIKVGQEYDLKQMN 152

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369
           S LV   Y+++ +    G F V GD ++I+P     +  R+  FG++++ +  F   T +
Sbjct: 153 SWLVASGYRKEALVAKPGEFAVRGDILDIYPLDQA-LPVRIEFFGDEVDTVKSFDVNTQK 211

Query: 370 KIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD 429
            I   + I +   S  +     L  A   IK+E+K  L     E          Q     
Sbjct: 212 SISEKDQINVLPASDRIFESANLKKAHNLIKDEIKESLNPKAAE----------QNFAQV 261

Query: 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE---SHVTIPQISGM 486
           L+ L       +      YL  ++      +L  Y+PE+ L+  ++      T  +I+  
Sbjct: 262 LDELSQGNLPDNYAFLVDYLLPKS-----CSLLSYLPENGLVVFNDWPAIKKTDGEIAAQ 316

Query: 487 YRGDFH----------RKATLAEYGFRLPSCMDNRP-----------LRFEEWN---CLR 522
                            +         L     NR            LRF+++    C  
Sbjct: 317 NASFISDEIKAGLMLNSQKLRLNLTTVLRQSKHNRLYLSLFQKGMGQLRFDDFFNWPCRE 376

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
           P            EL + Q      I++         E RS + Q   +  ++NL     
Sbjct: 377 PEQFFSQMPLIKSELNKYQKQGYTVILQADN------EKRSKQIQSNLIDFDLNLPIVAK 430

Query: 583 LRIL-----LTVLT---------KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            +++     +TV            ++       L+ + +  +     ++  +R+    DL
Sbjct: 431 DKLVEHKLQITVGQFNQGFYLPQLQLLYLTERELFNKQVHKKRKILNLENAQRLRNYNDL 490

Query: 629 RLGKFDVLVGINLLR-EGLDIPECG 652
           + G + V V   + R EG+   +  
Sbjct: 491 KPGDYVVHVNHGIGRFEGIKTLDVD 515



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 4/159 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++    +   P++          + +       +  
Sbjct: 764 VLTLTATPIPRTLHMSMVGVRDLSVMETPPVNRYPIQTYVMEQLPSVIREACLREMARDG 823

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          ++  E+L +     +   +H  +   +  +I+      +FD+LV   +
Sbjct: 824 QIFYLHNRIGDIDETVEHLQQLIPEAKIEAIHGRMSENQMSDILYRFLHKQFDILVTTTI 883

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           +  G+D+P    + I DAD  G L     L   IGR+AR
Sbjct: 884 IETGIDMPNVNTLIIEDADHYG-LSQLYQLRGRIGRSAR 921


>gi|212634585|ref|YP_002311110.1| transcription-repair coupling factor [Shewanella piezotolerans WP3]
 gi|212556069|gb|ACJ28523.1| Transcription-repair coupling factor [Shewanella piezotolerans WP3]
          Length = 1158

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 122/330 (36%), Gaps = 34/330 (10%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            + S    Q L  + G+ +  T+A + +  Q   +V+  +   A  L +E        A+
Sbjct: 12  AVKSANLAQTLCTIGGAAQALTIANIAKQHQGVTLVVTADTPSAIALETELSYLLSETAM 71

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
             +             P  +T      S ++ +   R  A   + +    +V+  +S + 
Sbjct: 72  SIW-----------LFPDRETLPYDSFSPHQDLVSQRLEALSRIPQAQHSVVIVPISTLM 120

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +      S  ++ L+ GD+ +  ++   L+   Y   +     G F V G  I+IFP 
Sbjct: 121 VKLPPQSFLSGNVLILEKGDNYQLHDVREQLINTGYHSVEQVYEHGEFAVRGSIIDIFPM 180

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
              +  +R+ +F +++E I  F P T +  + + +I++     +    PT ++A++  ++
Sbjct: 181 -GSNQPFRIELFDDEVESIRHFDPETQRSSQEIASIRLLPAKEF----PTDDSAIEGFRQ 235

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             + R   L KE   +             +M+        IENY          +   +L
Sbjct: 236 RYRRRFEVLVKEPGSI------------YQMVSKKTMPAGIENYLPLFF-----DETASL 278

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           F+Y+P  + L          Q         
Sbjct: 279 FDYLPSKTQLVTLGDIEAASQAHLHEVEIR 308



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 68/182 (37%), Gaps = 15/182 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R        + + +     +
Sbjct: 760 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDD--ATIREALLREILR 817

Query: 582 GLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++     +    E    +++E L E  +     H +++  E   ++ D    +F+VLV
Sbjct: 818 GGQVYFLHNSVETIEKRAAEISELLPEARVVTA--HGQMRERELERVMSDFYHQRFNVLV 875

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K +
Sbjct: 876 CTTIIETGIDVPSANTIVIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLMTPHPKRM 931

Query: 698 QL 699
             
Sbjct: 932 TK 933


>gi|24373808|ref|NP_717851.1| transcription-repair coupling factor [Shewanella oneidensis MR-1]
 gi|24348203|gb|AAN55295.1|AE015667_5 transcription-repair coupling factor [Shewanella oneidensis MR-1]
          Length = 1164

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 163/444 (36%), Gaps = 54/444 (12%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           + +  ++Q L  + G G+  T+A +I   Q   +++  +   A  L  E        A++
Sbjct: 12  VKNGTQMQTLSCIAGVGQAVTLASLIRQHQGTTLIVTSDTPTALSLELELNYLLAKTAIK 71

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIY 282
                          P  +T      S ++ +   R      +      +V+  V+  + 
Sbjct: 72  -----------VRLFPDRETLPYDSFSPHQDLISQRLETLSQITHAEHSVVIVPVTTLMM 120

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +      S  +  LK GD  +  ++   L    Y   +     G F + G  ++IFP+ 
Sbjct: 121 RLPPKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTG 180

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
           + ++  R+ +F +++E I  F P T +    V  +++     +    PT ++A++  ++ 
Sbjct: 181 V-NMPLRIELFDDEVETIRHFDPETQRSSTPVNAVRLLPAKEF----PTDSSAIEGFRQR 235

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            + R   + K     E + + Q ++ +L           IENY          +   TLF
Sbjct: 236 YRRRFEVIVK-----EPESVYQLVSRNL-------MPAGIENYLPLFF-----DEVSTLF 278

Query: 463 EYIPEDSLLF----VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           +Y+P+++ L     +++S     Q   +   D  R   L      L +  +   L  E +
Sbjct: 279 DYLPKNTQLVTLGDIEKSARAHLQEVEIRYEDR-RVDPLRP----LLAPKELYLLIEELF 333

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
              +P        P          I    +           E+ SA  +++     +   
Sbjct: 334 AAFKPLPRYQFVAPNPDTNGVAAQIDARALP----------EV-SANHKLKQPLIALQDY 382

Query: 579 AQQGLRILLTVLTKRMAEDLTEYL 602
           A+Q  R+L +  ++   E L E L
Sbjct: 383 AEQAPRMLFSAESEGRREALLELL 406



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+     +    V + I     +G 
Sbjct: 761 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGG 820

Query: 584 RILLT---VLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T     +D++  L E  + V   H +++  +   ++ D    +F+VLV  
Sbjct: 821 QVYYLHNNVETIEKCAQDISTLLPEARVVVA--HGQMRERDLERVMSDFYHQRFNVLVCT 878

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +
Sbjct: 879 TIIETGIDVPSANTIIIERADTFGLAQ----LHQLRGRVGRSHHQAYAYLMTPHPKRM 932


>gi|157961369|ref|YP_001501403.1| transcription-repair coupling factor [Shewanella pealeana ATCC
           700345]
 gi|157846369|gb|ABV86868.1| transcription-repair coupling factor [Shewanella pealeana ATCC
           700345]
          Length = 1157

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 117/311 (37%), Gaps = 34/311 (10%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            + S +  Q L  + G+ +  T+A + +      +V+  +   A  L +E        ++
Sbjct: 11  AVKSAKLAQTLCTLGGAAQALTIANIAKQHLGVTLVVTADTPNAISLETELSYLLSEQSI 70

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                      P    P  +T      S ++ +   R  A   + +    +V+  ++ + 
Sbjct: 71  -----------PIWLFPDRETLPYDSFSPHQDLVSQRLEALSRIPQAQHAVVIVPITTLM 119

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +      +  ++ L+ GD     ++   L+   Y   +     G F V G  I+IFP 
Sbjct: 120 VRLPPQSFLTGNVLMLEKGDKYRLMDVREQLINTGYHVVEQVYEHGEFAVRGSIIDIFPM 179

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
                 +R+ +F +++E I  F P T +  + +  I++     +    PT + A++  ++
Sbjct: 180 GSS-QPFRIELFDDEVETIRHFDPETQRSSKEINAIRLLPAKEF----PTDDAAIEGFRQ 234

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             + R   L KE   +             +M+        IENY          +   TL
Sbjct: 235 RYRRRFEVLVKEPGSI------------YQMVSKKTMPAGIENYLPLFF-----DETSTL 277

Query: 462 FEYIPEDSLLF 472
           F+Y+P ++ L 
Sbjct: 278 FDYLPSNTQLI 288



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 66/180 (36%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+          + + +     +G 
Sbjct: 759 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDEATIREALLREILRGG 818

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++     +    E    +++E L E  +     H +++  E   ++ D    +F+VLV  
Sbjct: 819 QVYFLHNSVETIEKRAAEISELLPEARVVTA--HGQMRERELERVMSDFYHQRFNVLVCT 876

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           KS+  
Sbjct: 877 TIIETGIDVPSANTIVIERADNFGLAQ----LHQLRGRVGRSHHQAYAYLMTPHPKSMTK 932


>gi|210608664|ref|ZP_03287941.1| hypothetical protein CLONEX_00120 [Clostridium nexile DSM 1787]
 gi|210152921|gb|EEA83927.1| hypothetical protein CLONEX_00120 [Clostridium nexile DSM 1787]
          Length = 1112

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 119/263 (45%), Gaps = 20/263 (7%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            ++ K    ++ +  + G   S KT  M  + +  +R  I +  +++ A Q+Y E++  F
Sbjct: 15  EEIQKKRTEKQGMIQISGCVTSQKTHLMYALGDGFKRKIIAV-SSELKAKQIYEEYR--F 71

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
             + V  +             P  D    +     + + + R    ++LLE+    V++S
Sbjct: 72  LDSDVWIY-------------PAKDLLFYQADLRGKFLIKQRMEVYQALLEQEQVTVITS 118

Query: 278 VSC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
               +  +  +E   + ++ L+ G  ++ ++L   +V   Y+R++     G F V G  +
Sbjct: 119 FDGFMDSLLPLEEMEKRVISLEAGQELDFEKLKKDMVLLGYEREEQIEGPGQFAVRGGIL 178

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +I+P   E+V  R+ M+G++I+ I  F   + + I N+E+I+IY  + +  P        
Sbjct: 179 DIYP-LTEEVPVRIEMWGDEIDSIRTFDVESQRSIENLESIRIYPATDF--PEEQAKRVS 235

Query: 397 KYIKEELKMRLIELEKEGRLLEA 419
                + K  ++ L++  RL+E 
Sbjct: 236 FLDYFDKKTSMLFLDEPVRLIEK 258



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 16/190 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +  +    L + PV+    +T V     E V + I    
Sbjct: 715 VLTLTATPIPRTLHMSLIGIRDMSV----LEEAPVDRMPIQTYVMEYNDEMVREAIQREL 770

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++       +  +++T+ + +      V + H ++K  E   I+ D   G+ DVLV
Sbjct: 771 SRQGQVYYVYNKVKDIDEITDKVQKLVPEANVAFAHGQMKERELENIMLDFINGEIDVLV 830

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + I DAD+ G L     L   +GR+ R   + ++   D + + +
Sbjct: 831 STTIIETGLDISNANTMIIHDADQLG-LSQMYQLRGRVGRSNRMAYAFLLYKRDKLLREV 889

Query: 698 QL----AIDE 703
                 AI E
Sbjct: 890 AEKRLSAIRE 899


>gi|295397825|ref|ZP_06807889.1| transcription-repair coupling factor [Aerococcus viridans ATCC
           11563]
 gi|294973922|gb|EFG49685.1| transcription-repair coupling factor [Aerococcus viridans ATCC
           11563]
          Length = 1233

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 74/460 (16%), Positives = 178/460 (38%), Gaps = 40/460 (8%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE-AMQRPAIVMAPNKILAAQLYS 211
           Q  +  Q  K      +  L LG+ G+ + +    ++  A ++  +++  N + A   Y+
Sbjct: 12  QNESFKQQAKS----GQSVLYLGLQGASRAYMAKTLLNLASEQKVVIVTNNLLQADHFYN 67

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           + ++ F  + +  F        PE+     D  I    ++ +++  +      +   +  
Sbjct: 68  DLQSDFSDDQLHLF------NVPES--VAADWAIASPEALADRLTVLN----WARDTKTT 115

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQL-KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            ++++ +  +  + +          L K+GD +E   L+  L+ Q Y+R +I +  G   
Sbjct: 116 GVLITPMFGLKRLLTPTEIWDNTRLLVKLGDELEPATLVQCLLNQGYQRAEIVMTPGEMS 175

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
             GD ++ +P + E    RVS+  +++E IS F P T + +++  +I I  +  ++    
Sbjct: 176 QRGDIVDFYPINAE-YPIRVSLAFDEVERISTFDPNTQKSLQDQPSINIQPSQEFIVLPQ 234

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE-MLETTGSCQSIENYSRYL 449
            L       ++ +   L +++ E      + L   +  D     +   + ++ + + RY+
Sbjct: 235 QLQAQADAFQKLMTKSLAKIKDEV----VKDLATAVVNDEVLAWKNGETTENSKYFHRYM 290

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
                     T+ +YI + + L +D+    I + +           T+ E G +LP+ + 
Sbjct: 291 YP-----ETTTILDYIGDQAFLILDDYARLIQEEATWISNTEMYLQTMVEMG-QLPAQVQ 344

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
                 E     +      S         +  G+   Q    T   D          Q++
Sbjct: 345 VYADFKEGIQAFKGRKFYFSVWQQGLGSLKFDGLYQYQTRMITQFYD----------QMD 394

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
            +  E++   + G  +++ +  K   + +   L E ++  
Sbjct: 395 ALKIELDAWIRTGRTVVVMLKDKDRVKKVQAILQEIDVTA 434



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 70/187 (37%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          V D I     +  
Sbjct: 774 VLTLTATPIPRTLNMSMLGVRDLSVIETPPANRYPVQTFVMEQNYGAVKDAIEREIARDG 833

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E+   ++ E     R    H ++  ++   ++ D  LG+FDVLV   +
Sbjct: 834 QVFYLFNNVAQIEEKAAFINELVPEARVAIAHGQMTVVQLENVMMDFVLGEFDVLVTTTI 893

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + +  AD+ G     ++L Q  GR  R+       +     K     +
Sbjct: 894 IETGVDIPNANTLLVEGADRMGL----STLYQLRGRVGRSTRIAYAYFMYRPDKM----L 945

Query: 702 DETTRRR 708
            E + +R
Sbjct: 946 SEVSEKR 952



 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKT 182
              + ++    + +   F+    Y  + DQ  +IA++ K +   +   +LL+G  G GKT
Sbjct: 599 EAQKGFAFGPDTAEQAEFENAFPYTETDDQVRSIAEIKKDMEVEKPMDRLLVGDVGFGKT 658

Query: 183 -FTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPH 219
              M  V +A+   +    + P  +LA Q Y  F   F  
Sbjct: 659 EVAMRAVFKALMEGKQVAFLVPTTVLAQQHYETFTERFAD 698


>gi|239941833|ref|ZP_04693770.1| putative transcriptional-repair coupling factor [Streptomyces
           roseosporus NRRL 15998]
 gi|239988293|ref|ZP_04708957.1| putative transcriptional-repair coupling factor [Streptomyces
           roseosporus NRRL 11379]
          Length = 1177

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 121/345 (35%), Gaps = 45/345 (13%)

Query: 155 AAIAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
            A+A+ +K      +  + L+G  G  + F +A +     R  + +      A  L +  
Sbjct: 14  PALAEAVKAAGDGHRAHVDLVGPPG-ARPFAVAALARQTGRTVLAVTATGREAEDLAAAL 72

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           +   P + V  + S+ +    E   PR+DT   + +     + R+ H            +
Sbjct: 73  RTLLPPDTVAEYPSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPREDDPETGPVSV 127

Query: 274 VVSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           VV+ +  +      G+G +E        L  G S +  E++ +L    Y R ++   RG 
Sbjct: 128 VVAPIRSVLQPQVKGLGDLEPV-----SLAGGQSADLGEVVDALAAAAYSRVELVEKRGE 182

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVT 387
           F V G  +++FP   E+   RV  +G+++EEI  F     + +      +        + 
Sbjct: 183 FAVRGGILDVFPP-TEEHPLRVEFWGDEVEEIRYFKIADQRSLEVAAHGLWAPPCRELLL 241

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
                  A       L     EL +                 L  +    + + +E+ + 
Sbjct: 242 TDQVRERAAV-----LAEAHPELGE----------------LLGKIAEGIAVEGMESLAP 280

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
            L           L + +P+D++  V +      + + +      
Sbjct: 281 VLVDDMEL-----LLDVLPKDAMAIVCDPERVRTRAADLVATSQE 320



 Score = 39.3 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 66/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + +  PP E     T V     + +   I    
Sbjct: 778 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEEKQIGAAIRREL 833

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 834 LREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSEAALEQVVVDFWEKKFDVLV 893

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R  +     +     K  
Sbjct: 894 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRDRGYAYFLYPPEKP- 948

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 949 ---LTETAHERLATIAQHTEMG 967


>gi|152995735|ref|YP_001340570.1| transcription-repair coupling factor [Marinomonas sp. MWYL1]
 gi|150836659|gb|ABR70635.1| transcription-repair coupling factor [Marinomonas sp. MWYL1]
          Length = 1137

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 74/364 (20%), Positives = 131/364 (35%), Gaps = 42/364 (11%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           L+ G+ GS K   +  +    + P + MA       +L  E +    +       S ++ 
Sbjct: 16  LINGLDGSRKALQLLAIASQHKLPTLYMANTVAELNELEDEIQFLNQNKREILRFSDWET 75

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESY 290
              +A+ P  D            I   R      L E  + IV+++V SC+  +   +  
Sbjct: 76  LPYDAFSPHQD------------IISQRLETLAKLTETKNPIVLTTVASCLTRLCPTQHL 123

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
                 L+ G  +  ++L   L    Y   +     G + + G  +++FP   E+   R+
Sbjct: 124 DAQRFHLEEGQELPLEQLSRKLSNAGYLNVENVHEHGEYAIRGALMDVFPMGAEN-PIRI 182

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             F N+IE I  F   T + I  V  IK+     +    PT    ++  ++  + R    
Sbjct: 183 DWFDNEIESIRWFDSETQRSISKVTEIKMLPAKEF----PTTPQGIQQFRQAFRER---- 234

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
                  E   L   I  D   + +      IE Y          E   ++F+Y+P D+L
Sbjct: 235 ------FETNPLSSPIYQD---ISSGIIPAGIEYYLPLFF-----EQTASVFDYLPSDTL 280

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM-DNRPLRFEEWNCLRPT--TIV 527
           +   ++     Q++ +      R  +L  Y    P    D   LR +E          I+
Sbjct: 281 IIRSDT--FNDQLASIQLDFRSRHESL-NYNIERPILKPDEICLREDELFAKLNQYTNII 337

Query: 528 VSAT 531
            SAT
Sbjct: 338 FSAT 341



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 18/202 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--V 571
           E++  LR     + ++ATP    L      I +  I  T      + +++   Q +D   
Sbjct: 734 EQFKALRAEVDILTLTATPIPRTLNMSLSGIRDLSIIAT-PPAKRLSVKTFVKQKDDHQT 792

Query: 572 YDEINLAAQQGLRILLT---VLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            + I     +G ++      V T +   E+L E + E  + V   H +++  E  +++ D
Sbjct: 793 KEAILRELHRGGQVYYLHNEVQTIQKTAEELEELIPEARVIVG--HGQMRERELEQVMSD 850

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
               + +VLV   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +    
Sbjct: 851 FYHKRANVLVCSTIIETGIDIPNANTIIIERADKFGLAQ----LHQLRGRVGRSHHQ--- 903

Query: 688 LYADTITKSIQLAIDETTRRRE 709
            YA  +T + +    +  +R E
Sbjct: 904 AYAYLLTPNDRKVTGDAEKRLE 925



 Score = 38.2 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 7/90 (7%)

Query: 141 FQMQT---DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQ 193
           +++ +    +  + DQ  AI  ++  + +++   +L+ G  G GKT      A +     
Sbjct: 584 YELFSAGFPFEETPDQQMAIDAVMADMSAKKPMDRLVCGDVGFGKTEVAMRAAFLAVQDG 643

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +   V+ P  +LA Q Y  F + F    VE
Sbjct: 644 KQVAVLVPTTLLAQQHYENFCDRFADWPVE 673


>gi|332306962|ref|YP_004434813.1| transcription-repair coupling factor [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174291|gb|AEE23545.1| transcription-repair coupling factor [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1160

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 82/523 (15%), Positives = 175/523 (33%), Gaps = 76/523 (14%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           +   ++  +  G + GS     +A      + P +++  +   A +L  E   F     V
Sbjct: 10  LAKGQRDAIHWGNLHGSSLALAIANAAGKTKGPILMVTADTPSAMKLEKELSFFLQGKKV 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCI 281
           +               P  +T      S ++ I   R      L +  N   +V   + +
Sbjct: 70  Q-----------VQLFPDWETLPYDNFSPHQDIISQRLETLYRLTQAENSVFIVPVNTLM 118

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +  S+ ++ LK+  +++     S L +  Y+  +  +    F + G  I++FP 
Sbjct: 119 LRMAPTDYLSKYLLFLKVNQTLDIDAFRSGLERSGYQHVNQVMGHSEFSIRGSIIDLFPM 178

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
                 +R+ MF N+++ I  F P + +    ++ IK+     + T +         IK 
Sbjct: 179 -GSQQPFRIDMFDNEVDSIRYFDPDSQRSGDKIDEIKLLPAREFPTDQD-------GIKL 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             +  L + +                     +        IE Y          E   TL
Sbjct: 231 FRQQYLEKFDANNSKESV----------YYQVGKGMMPGGIEYYLPLFF-----EQSATL 275

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGD-FHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           F+Y+  D+LL +   H  + +    +  D   R   L            +RPL       
Sbjct: 276 FDYLHPDTLLIM---HGDLAKACDFFWTDVNERYEQLR--------YNLSRPL------- 317

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-------SARTQVE--DV 571
           + P  + +        L++   I +EQ  +         + R        ++ +V    +
Sbjct: 318 MAPAELFLRNEELFAALKKWPRITIEQNAKEQKAGVTNYDTRTIGDIAIKSQNKVPWATL 377

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            + ++   + G ++L +  ++   E L + L +  I+ +            E +   +  
Sbjct: 378 KERVSEWQKSGSKVLFSAESQGRRESLLDLLTKAGIKPKAF----------EHLDAFQKS 427

Query: 632 KFDVLVGINLLREGLDI--PECGLVAILDADKEGFLRSKTSLI 672
           K  + + I L      +      L  I + +  G   S+  L 
Sbjct: 428 KEQLGITIGLAEHSFVLFEDNKELAFITETELLGHKISQRRLR 470



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 9/189 (4%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E++  LR     + ++ATP    L     G+    II         ++    +   E + 
Sbjct: 751 EKFKALRSDVDILTLTATPIPRTLNMALSGMRDLSIIATPPAKRLAIKTFVNQRNKELIR 810

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRL 630
           + I     +G ++          E   + + E     R    H +++  E  +++ D   
Sbjct: 811 EAIMREILRGGQVYFLHNEVESIERTADEIAEIVPEARIAIGHGQMRERELEKVMGDFYH 870

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            +++VLV   ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +       
Sbjct: 871 QRYNVLVCTTIIETGIDVPTANTIIMDRADHLGLAQ----LHQLRGRVGRSHHQAYAYLL 926

Query: 691 DTITKSIQL 699
               K +  
Sbjct: 927 TPHPKRMTK 935



 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 89/234 (38%), Gaps = 35/234 (14%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +AA QG ++ + V T    ++  E+  +   +   ++  M       ++
Sbjct: 644 GKTEVAMRAAFIAANQGKQVAILVPTTLLAQQHYENFKDRFADWPFKIEVMSRFASAKDQ 703

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            +++  L  GK D++VG + LL+  +   + GLV I +  + G  + +        +A R
Sbjct: 704 KDVMAGLDDGKVDIVVGTHKLLQSDVKFDDLGLVIIDEEHRFGVRQKEKF------KALR 757

Query: 681 NVNSKVILYADTITKSIQLAID----------ETTRRREKQLEHNKKHNINPQSVKEKIM 730
           +    + L A  I +++ +A+              +R   +   N+++       KE I 
Sbjct: 758 SDVDILTLTATPIPRTLNMALSGMRDLSIIATPPAKRLAIKTFVNQRN-------KELIR 810

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKG-----KAHLKSLRKQMHLAADNLN 779
           E I   +L       +  + + +  +  +      +A +     QM      L 
Sbjct: 811 EAIMREILRGGQVYFLHNEVESIERTADEIAEIVPEARIAIGHGQMRE--RELE 862



 Score = 38.9 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            +  + DQ  AI  +++ +  S    +L+ G  G GKT      A +     +   ++ P
Sbjct: 609 PFEETLDQQQAINAVIQDMGSSNAMDRLVCGDVGFGKTEVAMRAAFIAANQGKQVAILVP 668

Query: 202 NKILAAQLYSEFKNFFPH 219
             +LA Q Y  FK+ F  
Sbjct: 669 TTLLAQQHYENFKDRFAD 686


>gi|294794147|ref|ZP_06759284.1| transcription-repair coupling factor [Veillonella sp. 3_1_44]
 gi|294455717|gb|EFG24089.1| transcription-repair coupling factor [Veillonella sp. 3_1_44]
          Length = 1098

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 58/282 (20%), Positives = 114/282 (40%), Gaps = 31/282 (10%)

Query: 161 LKGIHS--REKVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEFKNFF 217
           + G+++  R+   ++ G++GS K+F +++   A +++P +++  +K        +   F+
Sbjct: 16  VDGLNAFQRKGKSVIYGLSGSQKSFLLSQSFSAGLKKPVVIVVHDKDHKEMWERDLAFFW 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTD--TYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
           P+  V+ F             P TD   +     S+ +Q  +MR  A  +  E    ++ 
Sbjct: 76  PNVPVQSF-------------PITDHVDFTTVARSLEDQGAQMRALALLAWQE-PAVVIA 121

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           ++      + S        +   + DS+E+   L  LV   Y+R D    RG F V GD 
Sbjct: 122 NAEEVTQYVVSPHYLKGQSLHFALNDSIERDVALEQLVTIGYERVDQVEQRGHFAVRGDI 181

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP----- 390
           ++I+P +  D   R+  FG++I+ +  F     + I  +E+  +       +        
Sbjct: 182 LDIYPVNS-DHPIRIEFFGDEIDTLRFFSVENQRSIEQIESYTVTPFFLGKSDADSTLLS 240

Query: 391 --TLNTAMKY----IKEELKMRLIELEKEGRLLEAQRLEQRI 426
                T +      I+E LK  L E     +        QR 
Sbjct: 241 YVKEGTLIYDEPGRIQEALKKFLKEDPTHRKNHCDWNELQRT 282



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 10/159 (6%)

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVY 572
           +++EW       + +SATP    L      + E  +I        PV+       +  + 
Sbjct: 689 KWKEWASNID-VLTLSATPIPRTLHMSLVGVREMSVINTPPEERLPVQTYVVEYDMNLIA 747

Query: 573 DEINLAAQQGLRILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D I     +G ++   V  +      M E L   L      +   H ++   +  EI+ D
Sbjct: 748 DAIKRELARGGQV-YFVYNRVASINHMGELLESALPGLRYAIA--HGQMTGRQIEEIMTD 804

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
              G +DVL+  +++  GLDIP    + I DAD+ G  +
Sbjct: 805 FYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQ 843


>gi|116070624|ref|ZP_01467893.1| Transcription-repair coupling factor [Synechococcus sp. BL107]
 gi|116066029|gb|EAU71786.1| Transcription-repair coupling factor [Synechococcus sp. BL107]
          Length = 1192

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/344 (18%), Positives = 126/344 (36%), Gaps = 39/344 (11%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +LL+     E++ L+ G   + +    + + +    P +V+ P    A +  +  +    
Sbjct: 18  ELLERSRRSERL-LMRGAGRNCRALVASAMAQRDGSPLLVVVPTLEEAGRWTALLELMGW 76

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
             A  Y  S    Y+P  + P ++    +   +++ +                 IV +  
Sbjct: 77  SIASLYPTSEGSPYEP--FDPTSEIIWGQLQVLSDLL--------NDPESSGRAIVATER 126

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           S    +   ++       L  GD V+   L  +L K  Y+R       GT+   GD ++I
Sbjct: 127 SLQPHLPPPDALKTTCRVLTRGDEVDLDSLAETLAKLGYERVSTIDQEGTWSRRGDIVDI 186

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           F    E +  R+  FG ++ ++ EF P T + +  ++ +++                   
Sbjct: 187 FSVSSE-LPVRLEFFGEELVKLREFDPSTQRSLDPIDQLRLTPTGFNPL----------- 234

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           I ++L+  +   +    LL  Q          + L   G+ + +    R L G    E P
Sbjct: 235 IADQLRATMP--DGLSALLGDQ--------ATDELLEGGTPEGM----RRLMGLAWNE-P 279

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGD-FHRKATLAEYG 501
            +L +Y+P+ + + +DE    +            H K    E G
Sbjct: 280 ASLLDYLPDVTTVVIDERRQGLAHGQLWLDHAIEHHKEMAIEAG 323



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 69/195 (35%), Gaps = 17/195 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E V   I    
Sbjct: 772 VLTLSATPIPRTLYMSLSGVREMSLITT----PPPLRRPIKTHLASLDPEAVRSAIRQEL 827

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      ED+   L      +++   H ++   E    +     G+ DV++
Sbjct: 828 DRGGQVFYVVPRVEGIEDVATGLRAMLPGLKLLVAHGQMAEGELESAMVAFNAGEADVML 887

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA + G  +    L   +GR+    ++ +    +      
Sbjct: 888 CTTIVESGLDIPRVNTILIEDAHRFGLAQ-LYQLRGRVGRSGIQAHAWLFYPGNASLSDN 946

Query: 698 QLAIDETTRRREKQL 712
                   R R  Q 
Sbjct: 947 AR-----QRLRAIQE 956


>gi|257484414|ref|ZP_05638455.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 546

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 126/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E     +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304


>gi|221229524|ref|YP_002502940.1| putative transcription-repair coupling factor [Mycobacterium leprae
           Br4923]
 gi|219932631|emb|CAR70345.1| putative transcription-repair coupling factor [Mycobacterium leprae
           Br4923]
          Length = 1224

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 99/512 (19%), Positives = 178/512 (34%), Gaps = 45/512 (8%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           QL++   +R    +L G     +   +A  +  +  P +V+      A+ L +E +  F 
Sbjct: 28  QLMERAGTRPAELILAGPA-CAR-LFVASALARLG-PLLVVTATGREASNLTAELRGVFG 84

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
             AV  F S+ +    E   P  DT   +       + R+ H     L      +VV++V
Sbjct: 85  A-AVAMFPSW-ETLPHERLSPGVDTVGARLMV----LRRLAHPDDARL-GPPLQVVVTAV 137

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
             +    + +      V L +GD +  + +++ LV+  Y R D+   RG F V G  ++I
Sbjct: 138 RSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFAVRGGILDI 197

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN--VETIKIYANSHYVTPRPTLNTAM 396
           F     +   RV  +G++I E+  F  +  + I    V+T+   A    +        A+
Sbjct: 198 F-GPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSDDVRARAV 256

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           +         L       R  E   +   +T  L  L        +E     L      +
Sbjct: 257 E---------LAAQAAARRPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCP----D 303

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF---HRKATLAEYGFRLPSCMDNRPL 513
               L +    D+ + + +      Q + + + D        ++A  G    + +D   L
Sbjct: 304 DYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQL 363

Query: 514 RFEEWNCLRP-TTIVVSATPGSWELEQ-CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
               +  L       + +    W L Q      +E  IR           R  +  ++ +
Sbjct: 364 YGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPST------RGHQHAIDGI 417

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           +  +      G    +       A  + E L E +I    +               LR G
Sbjct: 418 FAMLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIPGAML------EPAAAPGLGLRPG 471

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEG 663
              VL G   L +G+ IP   LV I +AD  G
Sbjct: 472 LVGVLKGP--LLDGVVIPGANLVIITEADLTG 501



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 64/202 (31%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E     T V   +D      L  + 
Sbjct: 803 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGPHDDKQVAAALRREL 858

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +                 +       R +  H ++        +R     ++D+LV
Sbjct: 859 LRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPEDLLETTMRGFWNREYDILV 918

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + +  AD  G  +    L Q  GR  R+       +        
Sbjct: 919 CTTIVETGLDIPNANTLVVERADTFGLSQ----LHQLRGRVGRSHERGYAYFLYPPQAP- 973

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + E    R   +  N +  
Sbjct: 974 ---LTEIAYDRLVTIAQNNELG 992


>gi|163848640|ref|YP_001636684.1| transcription-repair coupling factor [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526576|ref|YP_002571047.1| transcription-repair coupling factor [Chloroflexus sp. Y-400-fl]
 gi|163669929|gb|ABY36295.1| transcription-repair coupling factor [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450455|gb|ACM54721.1| transcription-repair coupling factor [Chloroflexus sp. Y-400-fl]
          Length = 1185

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 85/590 (14%), Positives = 185/590 (31%), Gaps = 86/590 (14%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P + +  +   A +   + + +   + V  F             P  D    ++ S    
Sbjct: 64  PTLYITLSAESALRAADDLRQWLGSDQVWLF-------------PPADALPYEQMSPGRD 110

Query: 255 IDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +   R +  R L   +    IV S  + +         +   ++L+ G  V  +E + +L
Sbjct: 111 VLARRLAVLRGLQTGSFSGVIVTSVKALMQPTLPPSDLANATIRLQRGMQVSIEETVVTL 170

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           +   Y+R  +    G     G  ++++P   +++  R+  F ++I+ +  F P T +  +
Sbjct: 171 LDNGYQRVAMVEEPGELSRRGAILDVWPP-GDELPLRIEWFDDEIDSLRRFDPATQRSEQ 229

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            +E   I             + A++ I      +L    +        R         E 
Sbjct: 230 RLERADIGPPHEIPF--WRRDEALRRIDALDMSQLR--REVRDEWAVAR---------EQ 276

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L      +    Y+ +       +   TL +Y+P  S++ + E H+       +      
Sbjct: 277 LAGGQRFEGRAFYAPFFY-----DQTATLLDYLPPQSMVALAEGHLLAQHADEIDVQAAG 331

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
            +  L   G  LP       LR+ E +      +VV        ++       + +   +
Sbjct: 332 YRDQLLALG-ELPPDFPRPYLRWSELHLKESAKLVV--------VDLSHNEYPDALPPLS 382

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
             V P         Q+  + D +    + G  ++         ++L              
Sbjct: 383 FGVPPL-----YGGQLRRLIDTVVEQVRGGELVVAVTAQAARLQELVG------------ 425

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT--S 670
                      + ++   G+F  +     L  G  + +  L  + D++  G  + +    
Sbjct: 426 ---------ERLAQETVSGRF--VPIHGGLEAGFTLADLHLTLLTDSEIFGVRQRRPLAE 474

Query: 671 LIQTIGRAARNV-------NSKVILYADTI---TKSIQLAIDETTRRREKQLEHNKKHNI 720
             +  G   R            V+     I      I+  + E  R         +    
Sbjct: 475 RRRKTGTTDRAAFLRTLKPGDYVVHIEHGIAIFDGMIRRTVSEVEREYLVLRYAGEDKIY 534

Query: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQ 770
            P    ++I  V   I   D   T   +  Q    +K+K +A ++ L ++
Sbjct: 535 VP---VDQIDRVTRYIGAGDGPPTLTRLGTQDWERTKRKVRAAVQDLAEE 581



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 69/183 (37%), Gaps = 21/183 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV----EDVYDEINLAA 579
            + ++ATP    L           IR   ++D P E R   +T V    + +  E+    
Sbjct: 765 VLTLTATPIPRTLHMALAG-----IRDLSVIDTPPEDRIPIKTYVVPTDDHLIQEVIRRE 819

Query: 580 QQGLRILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            +    +  V  +      +AE L   + E  I V   H ++   E  +++ D   G++D
Sbjct: 820 LEREGQVYVVHNRVQSIYHVAERLRRLVPEARIAVG--HGQLAERELEQVMIDFFEGRYD 877

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV   ++  GLD+P    + I DA   G  +    L Q  GR  R              
Sbjct: 878 VLVCTTIIESGLDVPNANTIIIDDATNYGLAQ----LYQLRGRVGRGATRAYAYLLYNAA 933

Query: 695 KSI 697
           + +
Sbjct: 934 RVM 936


>gi|289810193|ref|ZP_06540822.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 144

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 57/138 (41%), Positives = 83/138 (60%), Gaps = 8/138 (5%)

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           RS+ SLIQTIGRAARNVN K ILY D IT S+  AI ET RRREKQ ++N++H I PQ +
Sbjct: 1   RSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 60

Query: 726 KEKIMEVI--------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
            +K+++++             +    +       +L ++ K  +  +  L +QM   A N
Sbjct: 61  NKKVVDILALGQNIAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEEQMMQHAQN 120

Query: 778 LNFEEAARIRDEIKRLKS 795
           L FEEAA+IRD++ +L+ 
Sbjct: 121 LEFEEAAQIRDQLHQLRE 138


>gi|15827046|ref|NP_301309.1| transcription-repair coupling factor [Mycobacterium leprae TN]
 gi|13092593|emb|CAC29760.1| putative transcription-repair coupling factor [Mycobacterium
           leprae]
          Length = 1224

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 99/512 (19%), Positives = 178/512 (34%), Gaps = 45/512 (8%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           QL++   +R    +L G     +   +A  +  +  P +V+      A+ L +E +  F 
Sbjct: 28  QLMERAGTRPAELILAGPA-CAR-LFVASALARLG-PLLVVTATGREASNLTAELRGVFG 84

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
             AV  F S+ +    E   P  DT   +       + R+ H     L      +VV++V
Sbjct: 85  A-AVAMFPSW-ETLPHERLSPGVDTVGARLMV----LRRLAHPDDARL-GPPLQVVVTAV 137

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
             +    + +      V L +GD +  + +++ LV+  Y R D+   RG F V G  ++I
Sbjct: 138 RSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVDMVGRRGEFAVRGGILDI 197

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN--VETIKIYANSHYVTPRPTLNTAM 396
           F     +   RV  +G++I E+  F  +  + I    V+T+   A    +        A+
Sbjct: 198 F-GPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAIACRELLLSDDVRARAV 256

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           +         L       R  E   +   +T  L  L        +E     L      +
Sbjct: 257 E---------LAAQAAARRPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVLCP----D 303

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF---HRKATLAEYGFRLPSCMDNRPL 513
               L +    D+ + + +      Q + + + D        ++A  G    + +D   L
Sbjct: 304 DYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDVEQL 363

Query: 514 RFEEWNCLRP-TTIVVSATPGSWELEQ-CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
               +  L       + +    W L Q      +E  IR           R  +  ++ +
Sbjct: 364 YGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPST------RGHQHAIDGI 417

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           +  +      G    +       A  + E L E +I    +               LR G
Sbjct: 418 FAMLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIPGAML------EPAAAPGLGLRPG 471

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEG 663
              VL G   L +G+ IP   LV I +AD  G
Sbjct: 472 LVGVLKGP--LLDGVVIPGANLVIITEADLTG 501



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 64/202 (31%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E     T V   +D      L  + 
Sbjct: 803 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGPHDDKQVAAALRREL 858

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +                 +       R +  H ++        +R     ++D+LV
Sbjct: 859 LRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPEDLLETTMRGFWNREYDILV 918

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + +  AD  G  +    L Q  GR  R+       +        
Sbjct: 919 CTTIVETGLDIPNANTLVVERADTFGLSQ----LHQLRGRVGRSHERGYAYFLYPPQAP- 973

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + E    R   +  N +  
Sbjct: 974 ---LTEIAYDRLVTIAQNNELG 992


>gi|330826160|ref|YP_004389463.1| transcription-repair coupling factor [Alicycliphilus denitrificans
           K601]
 gi|329311532|gb|AEB85947.1| transcription-repair coupling factor [Alicycliphilus denitrificans
           K601]
          Length = 1163

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 92/539 (17%), Positives = 180/539 (33%), Gaps = 94/539 (17%)

Query: 178 GSGKTFTMAKV---IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           GS     +A++    +A  R   ++  +   A +L  E   F P      F  + +    
Sbjct: 19  GSSDALLLARLGLQQKAEGRTTAIVTADAGDAQRLIDEIAFFAPDLRCALFPDW-ETLPY 77

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           +++ P  D   E+ +++  +I +      +      D ++V + + +Y +      +   
Sbjct: 78  DSFSPHQDLISERLATL-WRISQ------KDRDTGADVVLVPATTALYRLAPPSFLAGYT 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
              K G  +++  L + L    Y+     +  G + V G  I++FP       +RV +F 
Sbjct: 131 FHFKTGQRLDEARLRAQLTLAGYQHVSQVVSHGEYAVRGGLIDLFPM-GSPQPYRVDLFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P + + +  V  +++     +              + + + R  EL    
Sbjct: 190 DEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDEAA--------RAKFRQRWREL---- 237

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
             LE      RI  D   +    +   IE Y          +   T+F+Y+  D+ + + 
Sbjct: 238 --LEGDPTRSRIYKD---MGNGVATAGIEYYLPLFF-----DETATVFDYLGADATVVLH 287

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
                + Q       + +R          LP   +   L  +++         +S  PG 
Sbjct: 288 GDLEGVFQRFWQDTRERYRLIQGDPDHPVLPP--EALFLSADQFYGQAKPHAQLSLRPGV 345

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
            +++               L D  V +R A   +  +   I    Q   R+LL   +   
Sbjct: 346 EDVQDNAQF--------QKLPDLSV-VRGADDPLARLQAHIRATPQ---RVLLLAESDGR 393

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            E L ++L    +      S    L   +   + R+G     +    L  G    E GL 
Sbjct: 394 RESLLDFLRASGLNPPAFDS----LAEFQSTPEERVG-----IATAALATGFAWVEEGL- 443

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
                                               D +T++   A   TTRRR+KQ +
Sbjct: 444 ------------------------------------DLVTETELFAAAPTTRRRKKQEQ 466



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 19/189 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    +    +G+    +I   P   +     +RS  T V  + + +    ++
Sbjct: 761 VLTLTATPIPRTMGMALEGLRDLSVIATAPQRRLAIKTFVRSEGTGV--IREAVLRELKR 818

Query: 582 GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +           E+    L E L E  I V   H ++   E  +++RD    ++++L+
Sbjct: 819 GGQCYFLHNEVETIENRRQKLEEILPEARIAVA--HGQMPERELEKVMRDFVAQRYNILL 876

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA----DTI 693
              ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           D +
Sbjct: 877 CSTIIETGIDVPSANTILISRADKFGLAQ----LHQLRGRVGRSHHQAYAYLMVPDLDGL 932

Query: 694 TKSIQLAID 702
           TK  Q  +D
Sbjct: 933 TKQAQQRLD 941


>gi|296128756|ref|YP_003636006.1| transcription-repair coupling factor [Cellulomonas flavigena DSM
           20109]
 gi|296020571|gb|ADG73807.1| transcription-repair coupling factor [Cellulomonas flavigena DSM
           20109]
          Length = 1214

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 95/487 (19%), Positives = 164/487 (33%), Gaps = 63/487 (12%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RP +V+      A +L +  + + P + V    S+ +    E   PR+DT   + +    
Sbjct: 61  RPLVVVTATGRDADELAAALRCYLPDDDVAVLPSW-ETLPHERLSPRSDTVARRVAVF-- 117

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG--DSVEQKELLSS 311
              R+ H            ++V  V  +  +  V      +V +++     V+  +L   
Sbjct: 118 --RRLAHPDPEPGPTGAVRVLVLPVRAL--LQPVVDGLGELVPVEVRTGQQVDLDDLAQR 173

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV   Y R D+   RG F V G  +++FP   ED   RV ++G D+EEI  F     + +
Sbjct: 174 LVDAAYTRVDMVERRGEFAVRGGILDVFPP-TEDHPLRVELWGEDVEEIRWFSVADQRSL 232

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
              E          +     +      ++E+L   L  L                    +
Sbjct: 233 EVAEHGLWAPPCREILLTDAVRARAAALREQLPGALDML--------------------D 272

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYR 488
            L    + + +E+ +  L  R        + + +P++SLL V +          +    +
Sbjct: 273 RLAEGIAVEGMESLAPVLVDRMVP-----VLDLVPDESLLVVVDPERVRRRAHDLVATTQ 327

Query: 489 GDFHRKATLAEYGFRLP---------SCMDNRPL---RFEEWNCLRPTTIVVSATPGSWE 536
                  T A  G   P         S  + R L   R   W  L   T+   A  G   
Sbjct: 328 EFLEAAWTSAAAGAATPLDLSSASFASFAEVRALAAVRALGWWTLSGFTLDADAVTGDDS 387

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
               +G      +R   +    VE    R +V     +++   QQG R++L       A+
Sbjct: 388 PATDEGPTAAPDVRTLVVGAREVE--RYRGEVARAVQDVHRLQQQGWRLVLATEGHGPAQ 445

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            + E L   ++  R + S     E              VLV    L  G       L   
Sbjct: 446 RMVEQLRAADVPARLVASVDDEPE-----------GGVVLVTPAPLGPGFVHEALHLAVF 494

Query: 657 LDADKEG 663
            ++D  G
Sbjct: 495 SESDLTG 501



 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 53/149 (35%), Gaps = 11/149 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     T    PP E     T V     + +   I    
Sbjct: 808 VLAMSATPIPRTLEMAVTGIREMSTLAT----PPEERHPVLTFVGPYEEKQISAAIRREL 863

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     L E     R    H ++   +  ++I D    +FDVLV
Sbjct: 864 LREGQVFYVHNKVESIERTASRLNELVPEARIAVAHGKMGEHQLEQVIVDFWEKRFDVLV 923

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLR 666
              ++  GLDI     + +  AD+ G  +
Sbjct: 924 CTTIVETGLDISNANTLILERADRLGLSQ 952


>gi|237797686|ref|ZP_04586147.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020536|gb|EGI00593.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 1150

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 126/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E  +  +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++   + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVDAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V           + + +     +G 
Sbjct: 754 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKPTIKEALLRELLRGG 813

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +  E    DL E + E  I +   H +++  +  +++ D    +F+VL+  
Sbjct: 814 QVYYLHNDVKTIEKCAADLAELVPEARIGIG--HGQMRERDLEQVMSDFYHKRFNVLIAS 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +              + 
Sbjct: 872 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RK 923

Query: 700 AIDETTRRREKQLEHNKKHN 719
            I     +R + + + +   
Sbjct: 924 QITHDAEKRLEAIANTQDLG 943


>gi|294792288|ref|ZP_06757436.1| transcription-repair coupling factor [Veillonella sp. 6_1_27]
 gi|294457518|gb|EFG25880.1| transcription-repair coupling factor [Veillonella sp. 6_1_27]
          Length = 1098

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 113/282 (40%), Gaps = 31/282 (10%)

Query: 161 LKGIHS--REKVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEFKNFF 217
           + G+++  R+   ++ G++GS K+F +++   A +++P +++  +K        +   F+
Sbjct: 16  VDGLNAFQRKGKSVIYGLSGSQKSFLLSQAFSAGLKKPVVIVVHDKDHKEMWERDLAFFW 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTD--TYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
           P+  V+ F             P TD   +     S+  Q  +MR  A  +  E    ++ 
Sbjct: 76  PNVPVQSF-------------PITDHVDFTTVARSLENQGAQMRALALLAWQE-PAVVIA 121

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           ++      + S        +   + D++E+   L  LV   Y+R D    RG F V GD 
Sbjct: 122 NAEEVTQYVVSPHYLKGQSLHFALNDAIERDVALEQLVTIGYERVDQVEQRGHFAVRGDI 181

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP----- 390
           ++I+P +  D   R+  FG++I+ +  F     + I  +E+  +       +        
Sbjct: 182 LDIYPVNS-DHPIRIEFFGDEIDTLRFFSVENQRSIEQIESYTVTPFFLGKSDADSTLLS 240

Query: 391 --TLNTAMKY----IKEELKMRLIELEKEGRLLEAQRLEQRI 426
                T +      I+E LK  L E     +        QR 
Sbjct: 241 YVKEGTLIYDEPGRIQEALKKFLKEDPTHRKNHCDWNELQRT 282



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 10/159 (6%)

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVY 572
           +++EW       + +SATP    L      + E  +I        PV+       +  + 
Sbjct: 689 KWKEWASNID-VLTLSATPIPRTLHMSLVGVREMSVINTPPEERLPVQTYVVEYDMNLIA 747

Query: 573 DEINLAAQQGLRILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D I     +G ++   V  +      M E L   L      V   H ++   +  EI+ D
Sbjct: 748 DAIKRELARGGQV-YFVYNRVASINHMGELLESALPGLRYAVA--HGQMTGRQIEEIMTD 804

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
              G +DVL+  +++  GLDIP    + I DAD+ G  +
Sbjct: 805 FYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQ 843


>gi|94499512|ref|ZP_01306049.1| transcription-repair coupling factor [Oceanobacter sp. RED65]
 gi|94428266|gb|EAT13239.1| transcription-repair coupling factor [Oceanobacter sp. RED65]
          Length = 1143

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 84/475 (17%), Positives = 160/475 (33%), Gaps = 69/475 (14%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           GS     +A      +   +V+  +   + +L  E   FF  + +               
Sbjct: 20  GSALAHQLAVSASQYKGLTLVITNSSGESQRLTEEISYFFNGDVIS-------------- 65

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLL-ERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           +P  +T      S ++ I   R S   +L        V+ ++S    +  V         
Sbjct: 66  LPDWETLPYDYFSPHQDIISERLSTLANLPKSERAIAVIPALSLQLRLPPVSYILGHSFS 125

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L +G++++  +L   LV   Y+  D     G F V G  ++IFP   E   +R+ +F ++
Sbjct: 126 LSVGETLDMDKLRQQLVSAGYQSVDGVYEHGEFCVRGAILDIFPMGSE-TPFRIELFDDE 184

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           IE I  F P T +     + I++         +P +           K R  E       
Sbjct: 185 IESIRWFNPETQRSTETTDKIELLPAKEVPLDKPGIRC--------FKSRWFEFFDS-DP 235

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
            E+      I               IE Y          +   TLF+Y+P+ + +   +S
Sbjct: 236 KESPLYTDVIKQIA--------PGGIEYYMPLFF-----DETATLFDYLPQQTQVIFPDS 282

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLP-----SCMDNRPLRFEEWNCLRPTTIVVSAT 531
                QI   ++   +R      +  R P         N    F ++  L       + T
Sbjct: 283 LQ--DQIQHNWQDIENRYEDR-RHDIRQPVLAPKEIYLNDNDIFAKFKDL-GRVRFSANT 338

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
               E +  +     ++  P+  VD   E R    ++E   +E +        ++ +V +
Sbjct: 339 --VEEAQGKENYSSPEL--PSIQVDHKKE-RPLA-KLEQFLNETH------QSVVFSVES 386

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
               E L E L    +          + + I+  +D+   +F+V +    L +  
Sbjct: 387 AGRREALIELLQRIKV----------SPQVIDEWQDIIENEFEVAITTAPLEDSF 431



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           + AEDL + + +  I V   H ++   +   ++ D    +F+VLV   ++  G+D+P   
Sbjct: 821 KTAEDLAKLIPDARIGVA--HGQMTERQLESVMSDFYHKRFNVLVCTTIVETGIDVPNAN 878

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            + +  ADK G  +    L Q  GR  R+ +         I K I  
Sbjct: 879 TIVLERADKFGLAQ----LHQLRGRVGRSHHQAYAYLMTPIEKKITK 921


>gi|312959638|ref|ZP_07774155.1| transcription-repair coupling factor [Pseudomonas fluorescens WH6]
 gi|311286355|gb|EFQ64919.1| transcription-repair coupling factor [Pseudomonas fluorescens WH6]
          Length = 1149

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 125/323 (38%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E   F P   V +F          
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E  +  +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++  ++ + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVDQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPM-GSKLPYRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P   + I  VE+IK+     +   +     A+   K   + R        
Sbjct: 187 DEIETLRTFDPENQRSIDKVESIKLLPAREFPLQKD----AVTRFKARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R     + L +  +   IE Y          +   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRCPIFQDLSSGITPAGIEYYLPLFF-----DETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 10/123 (8%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DL E + E  I +   H +++  E  +++ D    +F+VL+   ++  G+D+P    + I
Sbjct: 830 DLAELVPEARIAIG--HGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 887

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
             ADK G  +    L Q  GR  R+ +              +  I     +R + + + +
Sbjct: 888 ERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RQQITSDAEKRLEAIANTQ 939

Query: 717 KHN 719
              
Sbjct: 940 DLG 942


>gi|282850657|ref|ZP_06260036.1| transcription-repair coupling factor [Veillonella parvula ATCC
           17745]
 gi|282580150|gb|EFB85554.1| transcription-repair coupling factor [Veillonella parvula ATCC
           17745]
          Length = 1098

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 113/282 (40%), Gaps = 31/282 (10%)

Query: 161 LKGIHS--REKVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEFKNFF 217
           + G+++  R+   ++ G++GS K+F +++   A +++P +++  +K        +   F+
Sbjct: 16  VDGLNAFQRKGKSVIYGLSGSQKSFLLSQSFSAGLKKPVVIVVHDKDHKEMWERDLAFFW 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTD--TYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
           P+  V+ F             P TD   +     S+  Q  +MR  A  +  E    ++ 
Sbjct: 76  PNVPVQSF-------------PITDHVDFTTVARSLENQGAQMRALALLAWQE-PAVVIA 121

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           ++      + S        +   + D++E+   L  LV   Y+R D    RG F V GD 
Sbjct: 122 NAEEVTQYVVSPHYLKGQSLHFALNDAIERDVALEQLVTIGYERVDQVEQRGHFAVRGDI 181

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP----- 390
           ++I+P +  D   R+  FG++I+ +  F     + I  +E+  +       +        
Sbjct: 182 LDIYPVNS-DHPIRIEFFGDEIDTLRFFSVENQRSIEQIESYTVTPFFLGQSDADSTLLS 240

Query: 391 --TLNTAMKY----IKEELKMRLIELEKEGRLLEAQRLEQRI 426
                T +      I+E LK  L E     +        QR 
Sbjct: 241 YVKDGTLIYDEPGRIQEALKKFLKEDPTHRKNHCDWNELQRT 282



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 10/159 (6%)

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVY 572
           +++EW       + +SATP    L      + E  +I        PV+       +  + 
Sbjct: 689 KWKEWASNID-VLTLSATPIPRTLHMSLVGVREMSVINTPPEERLPVQTYVVEYDMNLIA 747

Query: 573 DEINLAAQQGLRILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D I     +G ++   V  +      M E L   L      V   H ++   +  EI+ D
Sbjct: 748 DAIKRELARGGQV-YFVYNRVASINHMGELLESALPGLRYAVA--HGQMTGRQIEEIMTD 804

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
              G +DVL+  +++  GLDIP    + I DAD+ G  +
Sbjct: 805 FYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQ 843


>gi|109898045|ref|YP_661300.1| transcription-repair coupling factor [Pseudoalteromonas atlantica
           T6c]
 gi|109700326|gb|ABG40246.1| transcription-repair coupling factor [Pseudoalteromonas atlantica
           T6c]
          Length = 1160

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 83/523 (15%), Positives = 173/523 (33%), Gaps = 76/523 (14%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           +   ++  +  G + GS    ++A      + P +++  +   A +L  E   F     V
Sbjct: 10  LAKGQRDAIHWGNLHGSSLAMSIANAAGKTKGPILLVTADTPSAMKLEKELSFFLQGKNV 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCI 281
           +               P  +T      S ++ I   R      L +  N   +V   + +
Sbjct: 70  Q-----------VQLFPDWETLPYDNFSPHQDIISQRLETLYRLTQAENCVFIVPVNTLM 118

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +  S+ ++ LK+  +++       L +  Y+  +  +    F + G  I++FP 
Sbjct: 119 LRMAPTDYLSKYLLFLKVNQTLDIDAFRLGLERAGYQHVNQVMGHSEFSIRGSIIDLFPM 178

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
                 +R+ +F ND++ I  F P + +    ++ IK+     + T +         IK 
Sbjct: 179 -GSQQPFRIDLFDNDVDSIRYFDPDSQRSGDKIDEIKLLPAREFPTDQD-------GIKL 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             +  L + +                     +        IE Y          E   TL
Sbjct: 231 FRQQYLEKFDANNSKE----------SIYYQVGKGMMPGGIEYYLPLFF-----EQSATL 275

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGD-FHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           F+Y+  D+LL +   H  + +    +  D   R   L            +RPL       
Sbjct: 276 FDYLHPDTLLMM---HGDLAKACDFFWTDVNERYEQLR--------YNLSRPL------- 317

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-------SARTQVE--DV 571
           + P  + +        L+Q   I +EQ  +         + R        ++ +V    +
Sbjct: 318 MAPADLFLRNEELFGALKQWPRITIEQNAKEQKAGVTNYDTRTIGDIAIKSQNKVPWATL 377

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
              +    + G ++L +  ++   E L + L +  I+ +            E +   +  
Sbjct: 378 KQRVADWQRSGSKVLFSAESQGRRESLLDLLGKAGIKPKAF----------EHLDAFQKS 427

Query: 632 KFDVLVGINLLREGLDI--PECGLVAILDADKEGFLRSKTSLI 672
           K  V + I L      +      L  I + +  G   S+  L 
Sbjct: 428 KELVGITIGLAEHSFVLFEDNKELAFITETELLGHKISQRRLR 470



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 11/190 (5%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--EDV 571
           E++  LR     + ++ATP    L      + +  I  T        I++   Q   E +
Sbjct: 751 EKFKALRSDVDILTLTATPIPRTLNMALSGMRDLSIIATPPAKRLA-IKTFVNQRSKELI 809

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLR 629
            + I     +G ++          E   + + E     R    H +++  E  +++ D  
Sbjct: 810 REAIMREILRGGQVYFLHNEVDSIERTADEIAEMVPEARIAIGHGQMRERELEKVMGDFY 869

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
             + +VLV   ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +      
Sbjct: 870 HQRHNVLVCTTIIETGIDVPSANTIIMDRADHLGLAQ----LHQLRGRVGRSHHQAYAYL 925

Query: 690 ADTITKSIQL 699
                K +  
Sbjct: 926 LTPHPKRMTK 935



 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            +  + DQ  AI  +++ +  S    +L+ G  G GKT      A +     +   ++ P
Sbjct: 609 PFEETLDQQQAINAVIQDMGSSNAMDRLVCGDVGFGKTEVAMRAAFIAANQGKQVAILVP 668

Query: 202 NKILAAQLYSEFKNFFPH 219
             +LA Q Y  FK+ F  
Sbjct: 669 TTLLAQQHYENFKDRFAD 686


>gi|89900125|ref|YP_522596.1| transcription-repair coupling factor [Rhodoferax ferrireducens
           T118]
 gi|89344862|gb|ABD69065.1| transcription-repair coupling factor [Rhodoferax ferrireducens
           T118]
          Length = 1175

 Score =  151 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 92/565 (16%), Positives = 186/565 (32%), Gaps = 103/565 (18%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV---IEAMQRPAIVMAPNKILAAQLYS 211
            A  +L K I    K   L    GS     +A++    ++  +   ++  + + A +L  
Sbjct: 12  PAFMELPKLIPG--KRFTLPRPVGSADALLLAQLGLREKSQHKVTAIITADALDAQRLID 69

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           E   F P      F  + +    + + P  D   E+ +++  +I   R+  T +     D
Sbjct: 70  EMAFFAPELRCVLFPDW-ETLPYDTFSPHQDLISERLATL-WRIS-QRNKETGA-----D 121

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            ++V + + +Y +      +      K+   +++ +L + L    Y      +  G + V
Sbjct: 122 VVLVPATTALYRLAPPSFLAGYTFHFKVKQKLDEAKLKAQLTLAGYSHVTQVVSPGEYAV 181

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I++FP     V +RV +F ++I+ I  F P + + +  V  +++     +      
Sbjct: 182 RGGLIDLFPMGSA-VPYRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDEA 240

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                       + R  EL      LE      RI  D   +    +   IE Y      
Sbjct: 241 RAR--------FRNRWREL------LEGDPTRSRIYKD---IGNGVATAGIEYYLPLFF- 282

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG---FRLPSCM 508
               +   T+F+Y+ E + + +   H  +      +  D   +  L +       LP   
Sbjct: 283 ----DDTATVFDYLGEAATVVL---HGDLEPAFAHFWQDTRERYRLVQGDPERPVLPPGA 335

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
               L  E++         ++  P    L+        + + P  +      +R A   +
Sbjct: 336 --LFLSTEQFYERVNQHAQLALRPA---LDTASAYAEFEALPPLSV------VRGAEDPL 384

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             +   I    Q   R L+   ++     L ++L          HS        + + + 
Sbjct: 385 ARLKAHIRNTQQ---RTLVLAESEGRRASLLDFL----------HSSQFDPPAFDSLAEF 431

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
                 + +  + L  G    E G+                                   
Sbjct: 432 ERSDEPIGIATSSLSAGFGWLEAGI----------------------------------- 456

Query: 689 YADTITKSIQLAIDETTRRREKQLE 713
             D +T++   A   TTRRR+KQ +
Sbjct: 457 --DFVTETELFAAGPTTRRRKKQEQ 479



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L E L E  I V   H ++   +   ++RD    +F++L+   ++  G+D+P    + + 
Sbjct: 852 LEELLPEARIAVA--HGQMPERQLEAVMRDFVAQRFNLLLCSTIIETGIDVPTANTIVMA 909

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ADK G  +    L Q  GR  R+ +           + +  
Sbjct: 910 RADKFGLAQ----LHQLRGRVGRSHHQAYAYLMVPDLEGLTK 947


>gi|330869865|gb|EGH04574.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330986245|gb|EGH84348.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331013175|gb|EGH93231.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 1150

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 127/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E  +  +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V           + + +     +G 
Sbjct: 754 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKPTIKEALLRELLRGG 813

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +  E    DL E + E  I +   H +++  E  +++ D    +F+VL+  
Sbjct: 814 QVYYLHNDVKTIEKCAADLAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLIAS 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +              + 
Sbjct: 872 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RK 923

Query: 700 AIDETTRRREKQLEHNKKHN 719
            I     +R + + + +   
Sbjct: 924 QITPDAEKRLEAIANTQDLG 943


>gi|298486416|ref|ZP_07004477.1| Transcription-repair coupling factor [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159044|gb|EFI00104.1| Transcription-repair coupling factor [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 1152

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 127/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E  +  +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V           + + +     +G 
Sbjct: 756 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKPTIKEALLRELLRGG 815

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +  E    DL E + E  I +   H +++  E  +++ D    +F+VL+  
Sbjct: 816 QVYYLHNDVKTIEKCAADLAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLIAS 873

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +              + 
Sbjct: 874 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RK 925

Query: 700 AIDETTRRREKQLEHNKKHN 719
            I     +R + + + +   
Sbjct: 926 QITPDAEKRLEAIANTQDLG 945


>gi|116669806|ref|YP_830739.1| transcription-repair coupling factor [Arthrobacter sp. FB24]
 gi|116609915|gb|ABK02639.1| transcription-repair coupling factor [Arthrobacter sp. FB24]
          Length = 1222

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 104/588 (17%), Positives = 190/588 (32%), Gaps = 103/588 (17%)

Query: 101 PSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQL 160
           PS+  L R +  D    +         S S    S+D   +Q+     P+G + A +A++
Sbjct: 6   PSLTGLRRALAGDTTFARV----QAEASRSFGTRSED---YQISA---PAGLRAALLAEM 55

Query: 161 LKGI---HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             G+   HS +          +G    +A            +      A  L +  + F 
Sbjct: 56  SDGLAALHSGDGASPAASNDDAGAPLVLA------------VTATGREAEDLTAALRAFL 103

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS---LLERNDCIV 274
           P  +V  F S+ +    E   PR+DT   + S     + R+ H  T S   L      + 
Sbjct: 104 PAGSVAEFPSW-ETLPHERLSPRSDTVGRRLSV----LRRLAHPETASGGPLRVVVAPVR 158

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
                 + G+G ++        LK+G      +++ SL    Y R D+   RG F V G 
Sbjct: 159 AVVQPIVAGLGDLKPV-----TLKVGQDAPFSDVVRSLSDAAYARVDMVTHRGEFAVRGG 213

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN--VETIK---IYANSHYVTPR 389
            +++FP   ED   RV  FG++++++  F     + + +  +              +   
Sbjct: 214 ILDVFPP-TEDHPIRVEFFGDEVDQMRWFAVADQRSLSSPGLHHPTELHAPPCREILITP 272

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
             ++ A   +K EL      L                    E +    + + +E+ +  L
Sbjct: 273 SVMSRA-ATLKTELPAAADML--------------------EKIAGGITVEGMESLAPVL 311

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYGFRLP- 505
                        E +P  S+  V E          ++           + A  G   P 
Sbjct: 312 VDAMVP-----FVEQLPGGSISVVIEPEKVRTRAHDLAATNEEFLEAAWSTASDGGTAPL 366

Query: 506 ----------SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
                          R L     + L       S T  + + E    I V        L 
Sbjct: 367 DLSSAASAALHSASFRSLTETRTSALGQEVSWWSITSLATDEELTPDINV--------LN 418

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
               E R  +  V ++ + I    +   RI++       A+ L E  ++ +I    + S 
Sbjct: 419 LHAREPRGYQGDVAEMMEFIGSHVRDQWRIVVATEGPGPAQRLAELFHDADIPCARVDS- 477

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                   +  + + G  +V      +  G  +    L  + +AD  G
Sbjct: 478 --------LDHEPQPGIIEV--TTAAVGRGFVLDGLKLGLLTEADLLG 515



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 53/150 (35%), Gaps = 13/150 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVEDVYDE-----INLA 578
            + +SATP    LE          IR T  +  P E R    T V    D+     I   
Sbjct: 822 VLAMSATPIPRTLEMSLTG-----IRETSTLATPPEERHPVLTYVGPYTDKQTSAAIRRE 876

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVL 636
             +  ++          E     + E     R    H ++      +II D    +FDVL
Sbjct: 877 LMREGQVFFVHNRVSSIERTAAKIRELVPEARVEVAHGQMSESRLEQIIVDFWEKRFDVL 936

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLR 666
           V   ++  GLDI     + +  ADK G  +
Sbjct: 937 VCTTIIETGLDISNANTLIVDGADKYGLSQ 966


>gi|170726164|ref|YP_001760190.1| transcription-repair coupling factor [Shewanella woodyi ATCC 51908]
 gi|169811511|gb|ACA86095.1| transcription-repair coupling factor [Shewanella woodyi ATCC 51908]
          Length = 1157

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 53/310 (17%), Positives = 116/310 (37%), Gaps = 34/310 (10%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           + S  K Q L  + G+ +  T+A +++  +   + +  +   A  L SE       + + 
Sbjct: 12  VKSATKAQTLFTLGGASQAITLANLVKDHEGLTLAVTSDTPTALLLESELNYLLQDDTL- 70

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
                     P    P  +T      S ++ +   R      +      +V+  +S +  
Sbjct: 71  ----------PVWLFPDRETLPYDSFSPHQDLVSQRLETLSQIPNAKRGVVIVPISTLMV 120

Query: 284 IGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
           +    S+ +  ++ L  GD+   +++   LV   Y   +     G F V G  I++FP  
Sbjct: 121 LLPPRSFLAGNVLMLAKGDNYCLQDVKQQLVDTGYHLVEQVYEHGEFAVRGSIIDLFPM- 179

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
                +R+ +F +++E I  F P T +    +++I++     + T    +    +  +  
Sbjct: 180 GSTQPYRIELFDDEVESIRHFDPETQRSSSAIDSIRLLPAKEFPTDSAAIEGFRQRYRRH 239

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            ++ + E E   +++  + L                   IENY          +   +LF
Sbjct: 240 FEVIVKEPESVYQMVSRKIL----------------PAGIENYLPLFF-----DETASLF 278

Query: 463 EYIPEDSLLF 472
           +Y+P  + L 
Sbjct: 279 DYLPAQTQLV 288



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 15/182 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R        + + +     +
Sbjct: 759 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDN--AAIREALLREILR 816

Query: 582 GLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++     T    E    +++E L E  +     H +++  E  +++ D    +F+VLV
Sbjct: 817 GGQVYFLHNTVETIEKRAAEISELLPEARVITA--HGQMRERELEKVMSDFYHQRFNVLV 874

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +           KS+
Sbjct: 875 CTTIIETGIDIPSANTIVIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLMTPHPKSM 930

Query: 698 QL 699
             
Sbjct: 931 TK 932


>gi|294141531|ref|YP_003557509.1| transcription-repair coupling factor [Shewanella violacea DSS12]
 gi|293328000|dbj|BAJ02731.1| transcription-repair coupling factor [Shewanella violacea DSS12]
          Length = 1157

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 57/311 (18%), Positives = 119/311 (38%), Gaps = 34/311 (10%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            + S  K Q L  + G  +  T+A +++      + +  +   A  L SE       +  
Sbjct: 11  AVKSASKAQTLYTLGGVSQAITLASLVQNHAGITVAVTHDTPTALLLESELDYLLKDSD- 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                      P    P  +T      S ++ +   R      L      +V+  +S + 
Sbjct: 70  ----------FPVWLFPDRETLPYDSFSPHQDLVSQRLETLSRLPHAKQGLVIVPLSTLM 119

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +      +  ++ LK GD+   +++   L+   Y   +     G F V G  I++FP 
Sbjct: 120 VRLPPKSFLAGNVLMLKKGDNYCLQDVKQQLINTGYHLVEQVYEHGEFAVRGSIIDLFPM 179

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E   +R+ +F +++E I  F P + +    +++I++     +    PT + A++  ++
Sbjct: 180 GSE-QPFRIELFDDEVESIRHFDPESQRSSGEIDSIRLLPAKEF----PTDDQAIEGFRQ 234

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             + R   L K     E + + Q ++              IE+Y          +   +L
Sbjct: 235 RYRRRFERLVK-----EPESVYQMVSR-------KIFPAGIESYLPLFF-----DETASL 277

Query: 462 FEYIPEDSLLF 472
           F+Y+PE++ L 
Sbjct: 278 FDYLPENAQLV 288



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 15/189 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+          + + +     +G 
Sbjct: 759 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFIREYDTTTIREALLREILRGG 818

Query: 584 RILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T  + A++++E L E  +     H +++  +   ++ D    KF+VLV  
Sbjct: 819 QVYFLHNKVETIEKRAKEISELLPEARVVTA--HGQMRERDLERVMSDFYHQKFNVLVCT 876

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           KS   
Sbjct: 877 TIIETGIDVPSANTIVIERADNFGLAQ----LHQLRGRVGRSHHQAYAYMMTPHPKS--- 929

Query: 700 AIDETTRRR 708
            I    R+R
Sbjct: 930 -ITSDARKR 937


>gi|330889122|gb|EGH21783.1| transcription-repair coupling factor [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 1150

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 126/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E     +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V           + + +     +G 
Sbjct: 754 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKPTIKEALLRELLRGG 813

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +  E    DL E + E  I +   H +++  E  +++ D    +F+VL+  
Sbjct: 814 QVYYLHNDVKTIEKCAADLAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLIAS 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +              + 
Sbjct: 872 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RK 923

Query: 700 AIDETTRRREKQLEHNKKHN 719
            I     +R + + + +   
Sbjct: 924 QITPDAEKRLEAIANTQDLG 943


>gi|95930005|ref|ZP_01312745.1| transcription-repair coupling factor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133974|gb|EAT15633.1| transcription-repair coupling factor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 1158

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 89/530 (16%), Positives = 186/530 (35%), Gaps = 66/530 (12%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           A  Q + G+  R +   +LG+ G      +A ++       +V+  +   A QL +E   
Sbjct: 13  AFVQTVNGLAGRAE---VLGLHGCAAARFLAGLLTPTGPALLVVVADLDQARQLTAELAF 69

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
           F           +++    E  VP +            +I+  R +    +L+     VV
Sbjct: 70  FSARPEKIRLFPHWEMAPFEPLVPHS------------EIEATRLATLYGVLQGEVEAVV 117

Query: 276 SSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           ++ + +   +   ++   +  +L + +  ++ +L   L    Y+   +   RGT+   GD
Sbjct: 118 TTPAALQQRVIPRQALHTLCEELILEEEYDRHQLQQRLHDLGYRSVPLVEDRGTYSFRGD 177

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKIYANSHYVTPRPTLN 393
            +++FP  LE    R+  FG+ IE +  +  LT +   + ++ + +  +   V     L+
Sbjct: 178 ILDLFPPTLE-QPVRIDFFGDYIERMRVYDALTQRSGDQQLDRLTLLPSREMVLTGSYLD 236

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
              +     LK R   LE      EA          LE +                 G+ 
Sbjct: 237 QFSQQ----LKQRCDALELPRTKREA---------ILEEVREGLLSPGRSFLLPLNYGQL 283

Query: 454 PGEPPPTLFEYIPEDSLLFVDES--HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
                 +LF+Y+  D+++ VD      T+ Q S              E  +  P  +   
Sbjct: 284 -----DSLFDYLATDTVVTVDAPAVEQTLDQFSRSIEQGVAHMVAGEEP-YVEPHQLYLA 337

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           P   E+   ++    +  A    ++L+  + ++    +   G  +   +    R  +  +
Sbjct: 338 PQELEQQLRVKRQIHL--ADLHIYDLDHDKSVLR---VESCGNGEFLQQAEPQR--IRHL 390

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            + +   A Q   ILL       A+ L + L    +  + + +     +R  +       
Sbjct: 391 AERLTAWADQQWSILLVCRRSGQAQRLNDLLKPYELDPQPLTTLPWNEQRGTLHW----- 445

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
                     +  G  +P+  LV + + +  G         Q + R  RN
Sbjct: 446 ------VCADISRGFQLPDEKLVVVTEEEVFG---------QRVKRRRRN 480



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 17/182 (9%)

Query: 516 EEWNCLRPTTIVV--SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--V 571
           E    +R    ++  SATP    L      + +  I  T  VD    IR+  T+ +D  +
Sbjct: 757 ERLKKMRAQVAMLTLSATPIPRTLNMGMIGMRDLSIIDTPPVDRLA-IRTYVTRFDDDLI 815

Query: 572 YDEINLAAQQGLRILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            + I    Q+G ++   V  +      MAE L   + E  I V   H ++   E  +++ 
Sbjct: 816 RNAILRELQRGGQV-YFVHNRVQSIGAMAEFLATLVPEAKIAVG--HGQMAEKELEKVML 872

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
               G+ +VLV   ++  GLDIP    + +  AD  G  +    L Q  GR  R+ N   
Sbjct: 873 GFIEGETNVLVASTIIENGLDIPRANTIIVNRADCFGLSQ----LYQLRGRVGRSKNRGY 928

Query: 687 IL 688
             
Sbjct: 929 AY 930



 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 79/256 (30%), Gaps = 42/256 (16%)

Query: 103 VQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLK 162
            +A A + +    LL          +++ +        F+    Y  + DQ AAI  +L+
Sbjct: 572 QKARAAVEEMARELLTIYARREMAEAFTFSPPDDVFRSFEAAFPYEETADQMAAIQDVLE 631

Query: 163 GIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKILAAQLYSEF--KNF 216
            + S     +L+ G  G GKT   +    +A    +   V+ P  ILA Q Y+ F  +  
Sbjct: 632 DMQSGRPMDRLICGDVGYGKTEVAIRAAFKAALDSKQVAVVVPTTILARQHYATFLERFH 691

Query: 217 FPHNAVEYFVSYYDYYQ-----PEAYVPRTDTYI-------------------------- 245
                VE    +           E    + D  I                          
Sbjct: 692 GYPVHVEMISRFRSAADQKRVLKELAEGQVDVVIGTHRLLQRDVHFKDLGMVVIDEEQRF 751

Query: 246 -----EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
                E+   +  Q+  +  SAT      N  ++      I     V+  +      +  
Sbjct: 752 GVSHKERLKKMRAQVAMLTLSATPIPRTLNMGMIGMRDLSIIDTPPVDRLAIRTYVTRFD 811

Query: 301 DSVEQKELLSSLVKQQ 316
           D + +  +L  L +  
Sbjct: 812 DDLIRNAILRELQRGG 827


>gi|70729336|ref|YP_259073.1| transcription-repair coupling factor [Pseudomonas fluorescens Pf-5]
 gi|68343635|gb|AAY91241.1| transcription-repair coupling factor [Pseudomonas fluorescens Pf-5]
          Length = 1149

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 61/323 (18%), Positives = 125/323 (38%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E   F P   V +F          
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSADRLEQELSFFAPDLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E     +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTQFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ +++ + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVEQMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPYRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P   + I  V+++++     +   +     A+   K   + R        
Sbjct: 187 DEIETLRTFDPENQRSIDKVDSVRLLPAKEFPLQKE----AVTRFKARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R     + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRCPIFQDLSSGITPAGIEYYLPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 10/123 (8%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DL E + E  I +   H +++  E  +++ D    +F+VL+   ++  G+D+P    + I
Sbjct: 830 DLAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 887

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
             ADK G  +    L Q  GR  R+ +              +  I     +R + + + +
Sbjct: 888 ERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RQQITPDAEKRLEAIANTQ 939

Query: 717 KHN 719
              
Sbjct: 940 DLG 942


>gi|271969774|ref|YP_003343970.1| transcription-repair coupling factor [Streptosporangium roseum DSM
           43021]
 gi|270512949|gb|ACZ91227.1| transcription-repair coupling factor [Streptosporangium roseum DSM
           43021]
          Length = 1204

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 89/519 (17%), Positives = 168/519 (32%), Gaps = 78/519 (15%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ----RPAIVMAPNKILAAQLYSE 212
           +A +L+ +   +   + L    + + FT+A +         R  + +      A  L + 
Sbjct: 44  LASVLEDVRGGDSSDVSLIAPPALRPFTVAALAREGAKDGARAVLAVTATGREAEDLAAA 103

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
             +    N V  F ++ +    E   PR DT  ++ +     + R+ H     +      
Sbjct: 104 LTSLLDPNTVAVFPAW-ETLPHERLSPRGDTVGQRLAV----LRRLAHPIEGDVAAGPLQ 158

Query: 273 IVVSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
           ++V+ V  +      G+G +         L+ GD  +   ++  LV+  Y R D+   RG
Sbjct: 159 VIVAPVRAVLQPIVRGLGDLRPVR-----LRAGDDADLDGIVHRLVENGYNRVDMVEKRG 213

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYV 386
              V G  +++FP   E+   R+  +G+ +EEI  F     + +   E  +        +
Sbjct: 214 EVAVRGGLLDVFPP-TEEHPLRLEFWGDSVEEIRWFKVADQRSLEVAEEGLFAAPCRELL 272

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
                   A      EL                  L   +   L+ L      + +E ++
Sbjct: 273 LTEDVRRRA-----RELAE----------------LHPALAEILDQLAEGVPMEGMEAFA 311

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS 506
             L G         L +++P  + +FV +      +I G             E  +   +
Sbjct: 312 PVLAGEMDL-----LIDHLPAQAAVFVCDP----ERIRGRADELVRTSQEFLEASWINAA 362

Query: 507 CMDNRPL-----RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE--QIIRPTGLVDPPV 559
                P+      F     +R           + EL Q    I          GLV    
Sbjct: 363 SGGEAPIDLGAAAFRTLEEIRDH---------ARELGQPWWSIAPFGGDDLGDGLVLQAR 413

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E  + R   +    +I    ++   ++L       AE + E L   ++            
Sbjct: 414 ESEAYRGDTQRALGDIKGWLEEDKVVVLLSEGHGPAERMVELLKGVDLPA---------- 463

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
            R+E   D       V V   L+  G   P   ++  LD
Sbjct: 464 -RLERALDRAPDGTVVHVSTGLIEHGFVSPTLAVLTHLD 501



 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 7/147 (4%)

Query: 525 TIVVSATPGS--WELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEINLAAQQ 581
            + +SATP     E+       +  I+ P     P +  +       + +   I     +
Sbjct: 800 VLAMSATPIPRTLEMGLTGIREMSTILTPPEERHPILTFVGPYDN--KQIGAAIRRELMR 857

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
             +I            +   L E     R    H ++   +  +I+      +FD+LV  
Sbjct: 858 DGQIFFVHNRVSSINKVAAMLRELVPEARVAVAHGQMNEHQLEKIMVGFWEREFDLLVCT 917

Query: 640 NLLREGLDIPECGLVAILDADKEGFLR 666
            ++  GLD+P    + +  AD  G  +
Sbjct: 918 TIVESGLDVPNANTLIVDRADNYGLSQ 944


>gi|146293254|ref|YP_001183678.1| transcription-repair coupling factor [Shewanella putrefaciens
           CN-32]
 gi|145564944|gb|ABP75879.1| transcription-repair coupling factor [Shewanella putrefaciens
           CN-32]
          Length = 1162

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 159/445 (35%), Gaps = 52/445 (11%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP--HNA 221
           + +  ++Q L  + G  +  T+A ++       +++  +   A  L  E           
Sbjct: 12  VKNGTQMQTLSALGGVCQAVTLASLVRQHPGTTLLVTSDTPSALSLELELTYLLGKCDIK 71

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-C 280
           V  F             P  +T      S ++ +   R      + +    +V+  V+  
Sbjct: 72  VRLF-------------PDRETLPYDSFSPHQDLISQRLETLSQISQTEHSVVIVPVTTL 118

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           +  +      S  +  LK GD  +   +   L    Y   +     G F + G  ++IFP
Sbjct: 119 MMRLPPKAYLSANVFVLKKGDRYQLHNVRQHLTDTGYHLVEQVYEHGEFAIRGSILDIFP 178

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
           + + ++  R+ +F +++E I  F P T + +  VE+I++     +    PT + A++  +
Sbjct: 179 TGV-NMPLRIELFDDEVETIRHFDPETQRSLHPVESIRLLPAKEF----PTDSAAIEGFR 233

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
           +  + R   + K     E + + Q ++ +L           IENY          +   T
Sbjct: 234 QRYRRRFEVIVK-----EPESVYQLVSRNL-------MPAGIENYLPLFF-----DEVAT 276

Query: 461 LFEYIPEDSLLFV--DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           LF+Y+P+++ L    D        +  +      R+         L +  +   L  E +
Sbjct: 277 LFDYLPKETQLVTLGDIEKSARAHLQEVETRYQDRRVDPLR---PLLAPKELYLLIEELF 333

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
              +P       +P +             +I    L D      SA  +++     +   
Sbjct: 334 AAFKPLPRYQFISPTTE----SVETGKTTVIDANQLPDI-----SANHKLKQPLLALQDY 384

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLY 603
           AQ   R+L +  ++   E L E L 
Sbjct: 385 AQNAPRMLFSAESEGRREALLELLS 409



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 84/262 (32%), Gaps = 34/262 (12%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+     +    V + I     +G 
Sbjct: 763 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + + +     R +  H +++  +   ++ D    +F+VLV   +
Sbjct: 823 QVYYLHNNVESIEKCAQGIIDLVPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTI 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +    
Sbjct: 883 IETGIDVPSANTIIIERADTFGLAQ----LHQLRGRVGRSHHQAYAYLMTPHPKRM---- 934

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761
             T+  R++                   ++ ++ +       T          L   +  
Sbjct: 935 --TSDARKRLEA----------------IDALEDLGAGFMLATQDLEIRGAGELLGDEQS 976

Query: 762 AHLKS----LRKQMHLAA-DNL 778
            H+      L  +M  AA   L
Sbjct: 977 GHISKIGFSLYMEMLEAAVKAL 998



 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 8/159 (5%)

Query: 85  SMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNH----SKDITF 140
           S+   +   +++       +A  + I+    +          R            ++   
Sbjct: 545 SVGADEDAHLNKLGNETWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEIDEEEYAQ 604

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSR-EKVQLLLGVTGSGKTFT---MAKVIEAMQRPA 196
           F     +  + DQ +AI  +L  + S     +L+ G  G GKT      A V     +  
Sbjct: 605 FAQGFPFEETVDQESAIHAVLADMRSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQV 664

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +V+ P  +LA Q Y  FK+ F    V   V        E
Sbjct: 665 VVLVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKE 703


>gi|289624078|ref|ZP_06457032.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 578

 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 127/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E  +  +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304


>gi|213967358|ref|ZP_03395506.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato T1]
 gi|301381676|ref|ZP_07230094.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058434|ref|ZP_07249975.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato K40]
 gi|302131161|ref|ZP_07257151.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213927659|gb|EEB61206.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato T1]
 gi|331019538|gb|EGH99594.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 1150

 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 126/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E  +  +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++   + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVNAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V           + + +     +G 
Sbjct: 754 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKPTIKEALLRELLRGG 813

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +  E    DL E + E  I +   H +++  +  +++ D    +F+VL+  
Sbjct: 814 QVYYLHNDVKTIEKCAADLAELVPEARIGIG--HGQMRERDLEQVMSDFYHKRFNVLIAS 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +              + 
Sbjct: 872 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RK 923

Query: 700 AIDETTRRREKQLEHNKKHN 719
            I     +R + + + +   
Sbjct: 924 QITSDAEKRLEAIANTQDLG 943


>gi|77460087|ref|YP_349594.1| transcription-repair coupling factor [Pseudomonas fluorescens
           Pf0-1]
 gi|77384090|gb|ABA75603.1| transcription-repair coupling factor [Pseudomonas fluorescens
           Pf0-1]
          Length = 1149

 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 126/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E   F P   V +F          
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E  +  +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ +++ S L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVEQMRSRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPYRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P   + I  V+++K+     +   +     A+   K   + R        
Sbjct: 187 DEIETLRTFDPENQRSIDKVDSVKLLPAKEFPLQKD----AVTRFKARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R     + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRCPIFQDLSSGITPAGIEYYLPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 10/123 (8%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L E + E  I +   H +++  E  +++ D    +F+VL+   ++  G+D+P    + I
Sbjct: 830 ELAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 887

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
             ADK G  +    L Q  GR  R+ +              +  I     +R + + + +
Sbjct: 888 ERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RQQITGDAEKRLEAIANTQ 939

Query: 717 KHN 719
              
Sbjct: 940 DLG 942


>gi|229816037|ref|ZP_04446358.1| hypothetical protein COLINT_03090 [Collinsella intestinalis DSM
           13280]
 gi|229808351|gb|EEP44132.1| hypothetical protein COLINT_03090 [Collinsella intestinalis DSM
           13280]
          Length = 1192

 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 97/567 (17%), Positives = 187/567 (32%), Gaps = 82/567 (14%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+  +   + + E   L   ++ SG+T  +A       RP + +   +  A +      
Sbjct: 14  EALQDIEAALAAGEDATLA--ISQSGRTLAVAAQFARTPRPTVYIVSGEEAADRAARSLA 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            +     V  F    D             Y  K +  ++ +   R +A   + +   CI+
Sbjct: 72  AYVGVEHVARFPERKD-------------YPWKSNEPDDAVVAARCAAMSRVAQGESCIM 118

Query: 275 VSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S  S +  +  +ES         +G+ +  +++ + LV   Y R D     G FRV G
Sbjct: 119 VASARSLLRCVPPLESRYWQSTVFSVGEEIPFEQVPARLVGMGYTRADAADAPGLFRVQG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D++EI+ +       R+  FG++I+ I      TGQ I + E+++I              
Sbjct: 179 DTVEIWAAQS-TAPVRIEFFGDEIDRIRLMVASTGQTIGDEESVEISPVRELALTDD--- 234

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A+K I E L      L  +     A  L        E+++       +E +   + G  
Sbjct: 235 -AVKRISEAL-----YLPAQNDTELAALL--------ELVQARVVTPELERFLPLMYGGT 280

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
                 +   ++  D+L+ + E        +  Y  D  R+              D +  
Sbjct: 281 -----VSPLAHVHRDALVILSEPRSLFDDCARAY-EDLERR------------AADAKVA 322

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG--LVDPPVEIRSARTQVEDV 571
           R +               P   +  + Q +    +IR  G    +  +E  +        
Sbjct: 323 RLDGLYVR----------PQELDFGRQQRLNYVSLIRAGGQVTAELKIEQPALAGSDNRF 372

Query: 572 YDEINLAAQQGLRILLTVLTKRMAE--DLT---------EYLYERNIRVRYMHSEVKTLE 620
              I          +  +  +   E  +L+         E L      V ++ S+V    
Sbjct: 373 VSRIQEVVNNRYACVFAIPDRGARESMELSFTDISVPFEESLQAAPENVGHVGSDVTVFL 432

Query: 621 RIEIIRDLRL-GKFDVLVGINLLREG----LDIPECGLVAILDADKEGFLRSK--TSLIQ 673
               +  L   G  +  V +  +  G    +DIP    V +  A    F  +   + +  
Sbjct: 433 LKRDVDALNARGLEEGSVAVPTITRGRVTFVDIPIPSGVVVPSAHLAVFSLADLNSRMDG 492

Query: 674 TIGRAARNVNSKVILYADTITKSIQLA 700
             GR  R V+   + +       +  A
Sbjct: 493 KRGRPRRRVDITEVTFPFKPGDYVVHA 519



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 65/179 (36%), Gaps = 9/179 (5%)

Query: 516 EEWNCLRPT--TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E+   +R     + +SATP    ++    G+    +I        PV +       + V 
Sbjct: 773 EQLKNMREQIDVLTLSATPIPRTMQMAMSGVRDMSLITTPPTGRRPVAVHVGEYDPDVVS 832

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
             I L   +G ++       +  +D  E + E     R    H ++   E  +++     
Sbjct: 833 AAIRLEIGRGGQVYYVSNRVKTIDDAVERVLEAAPEARIGVAHGKMSPREVEDVMVQFAT 892

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            K DVL+   ++  G+D      + I D+ + G  +    L Q  GR  R+       +
Sbjct: 893 KKIDVLIATTIVESGIDNSSANTLIIEDSQRLGLAQ----LYQLKGRVGRSATQAYAYF 947



 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 11/141 (7%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E            G ++++   T    ++  E   E      + V  +       ++
Sbjct: 666 GKTEVALRAAFKCVDGGRQVMVLCPTTILAQQHYETFFERFAPFGVEVEVLSRFRTPAQQ 725

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              +     GK DVL+G + LL   ++  E GLV I +  + G    +        +  R
Sbjct: 726 RRALAAFAEGKVDVLIGTHRLLSADVNPHELGLVIIDEEQRFGVQHKEQL------KNMR 779

Query: 681 NVNSKVILYADTITKSIQLAI 701
                + L A  I +++Q+A+
Sbjct: 780 EQIDVLTLSATPIPRTMQMAM 800


>gi|28869305|ref|NP_791924.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852546|gb|AAO55619.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 1150

 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 126/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E  +  +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++   + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVNAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V           + + +     +G 
Sbjct: 754 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKPTIKEALLRELLRGG 813

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +  E    DL E + E  I +   H +++  +  +++ D    +F+VL+  
Sbjct: 814 QVYYLHNDVKTIEKCAADLAELVPEARIGIG--HGQMRERDLEQVMSDFYHKRFNVLIAS 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +              + 
Sbjct: 872 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RK 923

Query: 700 AIDETTRRREKQLEHNKKHN 719
            I     +R + + + +   
Sbjct: 924 QITSDAEKRLEAIANTQDLG 943


>gi|330967943|gb|EGH68203.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 1150

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 126/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E  +  +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++   + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVNAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V           + + +     +G 
Sbjct: 754 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKPTIKEALLRELLRGG 813

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +  E    DL E + E  I +   H +++  +  +++ D    +F+VL+  
Sbjct: 814 QVYYLHNDVKTIEKCAADLAELVPEARIGIG--HGQMRERDLEQVMSDFYHKRFNVLIAS 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +              + 
Sbjct: 872 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RK 923

Query: 700 AIDETTRRREKQLEHNKKHN 719
            I     +R + + + +   
Sbjct: 924 QITSDAEKRLEAIANTQDLG 943


>gi|319762021|ref|YP_004125958.1| transcription-repair coupling factor [Alicycliphilus denitrificans
           BC]
 gi|317116582|gb|ADU99070.1| transcription-repair coupling factor [Alicycliphilus denitrificans
           BC]
          Length = 1163

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 92/539 (17%), Positives = 180/539 (33%), Gaps = 94/539 (17%)

Query: 178 GSGKTFTMAKV---IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           GS     +A++    +A  R   ++  +   A +L  E   F P      F  + +    
Sbjct: 19  GSSDALLLARLGLQQKAEGRTTAIVTADAGDAQRLIDEIAFFAPDLRCALFPDW-ETLPY 77

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           +++ P  D   E+ +++  +I +      +      D ++V + + +Y +      +   
Sbjct: 78  DSFSPHQDLISERLATL-WRISQ------KDRDTGADVVLVPATTALYRLAPPSFLAGYT 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
              K G  +++  L + L    Y+     +  G + V G  I++FP       +RV +F 
Sbjct: 131 FHFKTGQRLDEARLRAQLTLAGYQHVSQVVGHGEYAVRGGLIDLFPM-GSPQPYRVDLFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P + + +  V  +++     +              + + + R  EL    
Sbjct: 190 DEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDEAA--------RAKFRQRWREL---- 237

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
             LE      RI  D   +    +   IE Y          +   T+F+Y+  D+ + + 
Sbjct: 238 --LEGDPTRSRIYKD---MGNGVATAGIEYYLPLFF-----DETATVFDYLGADATVVLH 287

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
                  Q       + +R          LP   +   L  +++         +S  PG 
Sbjct: 288 GDLEGAFQRFWQDTRERYRLIQGDPDHPVLPP--EALFLSADQFYGQAKPHAQLSLRPGV 345

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
            +++               L D  V +R A   +  +   I+   Q   R+LL   +   
Sbjct: 346 EDVQDNAQF--------QKLPDLSV-VRGADDPLARLQAHIHATPQ---RVLLLAESDGR 393

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            E L ++L    +      S    L   +   + R+G     +    L  G    E GL 
Sbjct: 394 RESLLDFLRASGLNPPAFDS----LAEFQSTPEERVG-----IATAALATGFAWVEEGL- 443

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
                                               D +T++   A   TTRRR+KQ +
Sbjct: 444 ------------------------------------DLVTETELFAAAPTTRRRKKQEQ 466



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 19/189 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    +    +G+    +I   P   +     +RS  T V  + + +    ++
Sbjct: 761 VLTLTATPIPRTMGMALEGLRDLSVIATAPQRRLAIKTFVRSEGTGV--IREAVLRELKR 818

Query: 582 GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +           E+    L E L E  I V   H ++   E  +++RD    ++++L+
Sbjct: 819 GGQCYFLHNEVETIENRRQKLEEILPEARIAVA--HGQMPERELEKVMRDFVAQRYNILL 876

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA----DTI 693
              ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           D +
Sbjct: 877 CSTIIETGIDVPSANTILISRADKFGLAQ----LHQLRGRVGRSHHQAYAYLMVPDLDGL 932

Query: 694 TKSIQLAID 702
           TK  Q  +D
Sbjct: 933 TKQAQQRLD 941


>gi|158337270|ref|YP_001518445.1| transcription-repair coupling factor [Acaryochloris marina
           MBIC11017]
 gi|158307511|gb|ABW29128.1| transcription-repair coupling factor [Acaryochloris marina
           MBIC11017]
          Length = 1164

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 82/499 (16%), Positives = 169/499 (33%), Gaps = 64/499 (12%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           ++V  L GV    K    + + +  Q+   V+      A +  ++ +         Y  S
Sbjct: 26  QRVLELCGVPRLPKGLVASALAQQRQQHLFVVTATLEEAGRWATQLEAMGWQTVYFYPTS 85

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGS 286
               Y  E+    ++    +   + E +         +  E     +V++   +   +  
Sbjct: 86  EASPY--ESLDRESEMIWGQLQVLAETLK------LNANPEAAPLAIVTTERALQPHLPP 137

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           V+ +    + L+ G  ++ K L   L +  Y+R  +    G +   GD ++IFP    ++
Sbjct: 138 VQIFEPYCLSLEAGIELDLKTLSDKLARLGYERVSLVETEGQWSRRGDIVDIFPV-ASEL 196

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG++++++ EF P + + + + E + +   S       +L+ A +         
Sbjct: 197 PIRLEWFGDELDKMREFDPTSQRSLDSSEKLTLTPTSFAPITLASLSEAQQA-------- 248

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
                            Q   Y  E         ++E   R+L      E P +L +Y+P
Sbjct: 249 -----------------QVKAYLTEEELALLETGTLEGSQRFLGM--AFETPASLLDYLP 289

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
           E++L+ VDE     P  +        +  +++     LP      P   +++        
Sbjct: 290 ENTLVVVDEPMQCRPHSNRWVEHAQEQWESVS-----LPEAP--LPKLHQDFEAALDQIE 342

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
           V                + E      GL      + +   Q   + + I     +   I 
Sbjct: 343 VFER-----------VFLSELAEEKGGLNLSSRTVPAVPHQFGKLAETIREERDRKFSIW 391

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR--E 644
           L       +  L   L E +   +++ +    L     I  L+     V +  + L   E
Sbjct: 392 LISAQPSRSVAL---LQEHDCPAQFVPNPKDYL----AIDKLQEYHTPVALKYSGLAELE 444

Query: 645 GLDIPECGLVAILDADKEG 663
           G  +P    V I D +  G
Sbjct: 445 GFVLPTFRTVVITDREFFG 463



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 70/191 (36%), Gaps = 19/191 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E +   +    
Sbjct: 762 VLTLSATPIPRTLYMALSGVREMSLITT----PPPSRRPIKTHLSPYDPESIRSAVRQEL 817

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G +I   V      E++   L E     R    H ++   E    +     G  ++LV
Sbjct: 818 DRGGQIFYVVPRVEGIEEVAGKLREMVPSARIAIAHGQMVEGELEATMLTFSNGDAEILV 877

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA K G L     L   +GRA    ++ +           
Sbjct: 878 CTTIIESGLDIPRVNTILIEDAQKFG-LSQLYQLRGRVGRAGIQAHAWLFY-------PN 929

Query: 698 QLAIDETTRRR 708
           Q ++ E  R+R
Sbjct: 930 QSSLTEKARKR 940



 Score = 38.9 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI-NLLREGL 646
           T+LT++    L E      I++  ++      ER +I   L+ G+ D++VG   LL + +
Sbjct: 670 TILTQQHYHTLKERFAPYPIQIGLLNRFRSAEERKDIQNRLKTGELDIVVGTHQLLGKSV 729

Query: 647 DIPECGLVAILDADKEG 663
           +  + GL+ I +  + G
Sbjct: 730 NFRDLGLLVIDEEQRFG 746


>gi|260072636|gb|ACX30534.1| transcription-repair coupling factor [uncultured SUP05 cluster
           bacterium]
 gi|269468648|gb|EEZ80288.1| transcription-repair coupling factor (superfamily II helicase)
           [uncultured SUP05 cluster bacterium]
          Length = 1143

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/482 (15%), Positives = 160/482 (33%), Gaps = 64/482 (13%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS +   + + + A Q+  +++A +      LY     +     +  F   ++    +
Sbjct: 23  LYGSAQALALIEYVSAQQQVVLLIANDIGHYNHLYKALNFYNNDLDILRF-DNWEVLAFD 81

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMI 294
            + P  D                R +    L +    IV++++  +   +  +E   +  
Sbjct: 82  HFSPHPDITSN------------RLTTLSKLQDLKQGIVITTLESLSQHLCPLEFSKKYS 129

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             L+ GD +E       L+K  Y R    +  G F + G  ++++P       +R+ +F 
Sbjct: 130 FSLESGDELEMHNFSEKLLKIGYHRVTTVMEHGEFNIKGSLVDLYPM-GAKSPYRIDLFD 188

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
            +IE I  F P T + I  ++ I +     + T           I+   K  L       
Sbjct: 189 QEIESIRTFDPSTQRSIELIDQISLLPAREFATD-------TTSIEVFKKNYLKAFNNTD 241

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                        +    +  +     IE Y              TLF+Y+P ++++  +
Sbjct: 242 D------------FIFTEVSESRLPSGIEFYLSLFFNHT-----NTLFDYLPHNTVVATN 284

Query: 475 ESHVT-IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
           +   T + Q  G          +  +   RLP   D   L  ++          +     
Sbjct: 285 QGFSTLVDQTYGDLHTRHKNAKSNLD---RLPLDFDQVFLNKDQLFGEIKQRQQLLVGNS 341

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-VYDEINLAAQQGLRILLTVLTK 592
             E  +     + +++ P  +            Q ++ +   +N   +   RIL+   ++
Sbjct: 342 KLENNKHGINFISKLLPPLRI----------EAQAKNPLAKFLNFTKKFKGRILIVCESE 391

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
                LT+ L    +          T   ++  +D    K  + +    L EGL   +  
Sbjct: 392 GRQSVLTDLLNNHQL----------TPLSVKHWQDFSSCKQTLCITNANLSEGLLTNDIA 441

Query: 653 LV 654
           +V
Sbjct: 442 IV 443



 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 78/211 (36%), Gaps = 17/211 (8%)

Query: 516 EEWNCLRPT--TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVED 570
           E     R     + ++ATP    L    G + E  I    P G       +         
Sbjct: 740 ESLKKFRGQSDILTMTATPIPRTLNMALGSLRELSIIATPPQGRSAIQTFVNEWNDNT-- 797

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDL 628
           V +  +    +G +I +        +++ + L +   NI VR  H ++ + E   I+ D 
Sbjct: 798 VKEACSRELHRGGQIFVLHNDIDSIDNMAQILKDLMPNIHVRIAHGQMPSKELERIMSDF 857

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G+F +LV   ++  G+DIP    + I +A   G  +    L Q  GR  R+ +     
Sbjct: 858 YHGRFQILVCTTIIETGIDIPNANTIIINNAQNFGLAQ----LHQLRGRVGRSHHRAYAY 913

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHN 719
                 +S+        ++R   +E  ++  
Sbjct: 914 LVIKSHQSLSK----NAKKRLDAIESLEELG 940


>gi|309804680|ref|ZP_07698745.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           09V1-c]
 gi|308166072|gb|EFO68290.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           09V1-c]
          Length = 1110

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 102/233 (43%), Gaps = 17/233 (7%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F             P  +T   + +  +      R  A   LL +   
Sbjct: 68  LVELFEENMVHFFPVE----------PLLET---QAAVSSLDELSQRLDAMSFLLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  + I     
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADD 226



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V +       +  
Sbjct: 712 VLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPIQTYVTEETPNIVREACLRELARNG 771

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I       +  +    YL +     R  Y+H  +   +  +I+      KFD+LV   +
Sbjct: 772 QIFFLHNKIQDIDQKVAYLSQLIPEARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTI 831

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+D+P    + + +AD  G L     L   IGR++R   +  +   D +
Sbjct: 832 IETGVDLPNVNTLLVENADTYG-LSQLYQLRGRIGRSSRLAYAYFLYKRDKV 882


>gi|312872569|ref|ZP_07732637.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2062A-h1]
 gi|311091931|gb|EFQ50307.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2062A-h1]
          Length = 1110

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 102/233 (43%), Gaps = 17/233 (7%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F             P  +T   + +  +      R  A   LL +   
Sbjct: 68  LVELFEENMVHFFPVE----------PLLET---QAAVSSLDELSQRLDAMSFLLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  + I     
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADD 226



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V +       +  
Sbjct: 712 VLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPIQTYVTEETPNIVREACLRELARNG 771

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I       +  +    YL +     R  Y+H  +   +  +I+      KFD+LV   +
Sbjct: 772 QIFFLHNKIQDIDQKVAYLSQLIPEARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTI 831

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+D+P    + + +AD  G L     L   IGR++R   +  +   D +
Sbjct: 832 IETGVDLPNVNTLLVENADTYG-LSQLYQLRGRIGRSSRLAYAYFLYKRDKV 882


>gi|312874973|ref|ZP_07734992.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2053A-b]
 gi|311089718|gb|EFQ48143.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2053A-b]
          Length = 1110

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 102/233 (43%), Gaps = 17/233 (7%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F             P  +T   + +  +      R  A   LL +   
Sbjct: 68  LVELFEENMVHFFPVE----------PLLET---QAAVSSLDELSQRLDAMSFLLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  + I     
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADD 226



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V +       +  
Sbjct: 712 VLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPIQTYVTEETPNIVREACLRELARNG 771

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I       +  +    YL +     R  Y+H  +   +  +I+      KFD+LV   +
Sbjct: 772 QIFFLHNKIQDIDQKVAYLSQLIPEARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTI 831

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+D+P    + + +AD  G L     L   IGR++R   +  +   D +
Sbjct: 832 IETGVDLPNVNTLLVENADTYG-LSQLYQLRGRIGRSSRLAYAYFLYKRDKV 882


>gi|309803761|ref|ZP_07697847.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           11V1-d]
 gi|308164170|gb|EFO66431.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           11V1-d]
          Length = 1110

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 102/233 (43%), Gaps = 17/233 (7%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F             P  +T   + +  +      R  A   LL +   
Sbjct: 68  LVELFEENMVHFFPVE----------PLLET---QAAVSSLDELSQRLDAMSFLLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  + I     
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADD 226



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V +       +  
Sbjct: 712 VLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPIQTYVTEETPNIVREACLRELARNG 771

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I       +  +    YL +     R  Y+H  +   +  +I+      KFD+LV   +
Sbjct: 772 QIFFLHNKIQDIDQKVSYLSQLIPEARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTI 831

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+D+P    + + +AD  G L     L   IGR++R   +  +   D +
Sbjct: 832 IETGVDLPNVNTLLVENADTYG-LSQLYQLRGRIGRSSRLAYAYFLYKRDKV 882


>gi|325913119|ref|ZP_08175489.1| transcription-repair coupling factor [Lactobacillus iners UPII
           60-B]
 gi|325477540|gb|EGC80682.1| transcription-repair coupling factor [Lactobacillus iners UPII
           60-B]
          Length = 1110

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 102/233 (43%), Gaps = 17/233 (7%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F             P  +T   + +  +      R  A   LL +   
Sbjct: 68  LVELFEENMVHFFPVE----------PLLET---QAAVSSLDELSQRLDAMSFLLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  + I     
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADD 226



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V +       +  
Sbjct: 712 VLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPIQTYVTEETPNIVREACLRELARNG 771

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I       +  +    YL +     R  Y+H  +   +  +I+      KFD+LV   +
Sbjct: 772 QIFFLHNKIQDIDQKVAYLSQLIPEARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTI 831

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+D+P    + + +AD  G L     L   IGR++R   +  +   D +
Sbjct: 832 IETGVDLPNVNTLLVENADTYG-LSQLYQLRGRIGRSSRLAYAYFLYKRDKV 882


>gi|330961341|gb|EGH61601.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 1150

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 127/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E  +  +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELVHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V           + + +     +G 
Sbjct: 754 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKPTIKEALLRELLRGG 813

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +  E    DL E + E  I +   H +++  +  +++ D    +F+VL+  
Sbjct: 814 QVYYLHNDVKTIEKCAADLAELVPEARIGIG--HGQMRERDLEQVMSDFYHKRFNVLIAS 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +              + 
Sbjct: 872 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RK 923

Query: 700 AIDETTRRREKQLEHNKKHN 719
            I     +R + + + +   
Sbjct: 924 QITPDAEKRLEAIANTQDLG 943


>gi|312871549|ref|ZP_07731642.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           3008A-a]
 gi|311092944|gb|EFQ51295.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           3008A-a]
          Length = 1110

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 102/233 (43%), Gaps = 17/233 (7%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F             P  +T   + +  +      R  A   LL +   
Sbjct: 68  LVELFEENMVHFFPVE----------PLLET---QAAVSSLDELSQRLDAMSFLLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  + I     
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADD 226



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V +       +  
Sbjct: 712 VLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPIQTYVTEETPNIVREACLRELARNG 771

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I       +  +    YL +     R  Y+H  +   +  +I+      KFD+LV   +
Sbjct: 772 QIFFLHNKIQDIDQKVAYLSQLIPEARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTI 831

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+D+P    + + +AD  G L     L   IGR++R   +  +   D +
Sbjct: 832 IETGVDLPNVNTLLVENADTYG-LSQLYQLRGRIGRSSRLAYAYFLYKRDKV 882


>gi|330878592|gb|EGH12741.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 1150

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 126/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E  +  +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++   + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVNAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+Y+P+DS +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDSQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V           + + +     +G 
Sbjct: 754 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKPTIKEALLRELLRGG 813

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +  E    DL E + E  I +   H +++  +  +++ D    +F+VL+  
Sbjct: 814 QVYYLHNDVKTIEKCAADLAELVPEARIGIG--HGQMRERDLEQVMSDFYHKRFNVLIAS 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +              + 
Sbjct: 872 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RK 923

Query: 700 AIDETTRRREKQLEHNKKHN 719
            I     +R + + + +   
Sbjct: 924 QITSDAEKRLEAIANTQDLG 943


>gi|120598668|ref|YP_963242.1| transcription-repair coupling factor [Shewanella sp. W3-18-1]
 gi|120558761|gb|ABM24688.1| transcription-repair coupling factor [Shewanella sp. W3-18-1]
          Length = 1162

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 160/445 (35%), Gaps = 52/445 (11%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP--HNA 221
           + +  ++Q L  + G  +  T+A ++       +++  +   A  L  E           
Sbjct: 12  VKNGTQMQTLSALGGVCQAVTLASLVRQHPGTTLLVTSDTPSALSLELELTYLLGKCDIK 71

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-C 280
           V  F             P  +T      S ++ +   R      + +    +V+  V+  
Sbjct: 72  VRLF-------------PDRETLPYDSFSPHQDLISQRLETLSQISQTEHSVVIVPVTTL 118

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           +  +      S  +  LK GD  +   +   L    Y   +     G F + G  ++IFP
Sbjct: 119 MMRLPPKAYLSANVFVLKKGDRYQLHNVRQHLTDTGYHLVEQVYEHGEFAIRGSILDIFP 178

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
           + + ++  R+ +F +++E I  F P T + +  VE+I++     +    PT + A++  +
Sbjct: 179 TGV-NMPLRIELFDDEVETIRHFDPETQRSLHPVESIRLLPAKEF----PTDSAAIEGFR 233

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
           +  + R   + K     E + + Q ++ +            IENY          +   T
Sbjct: 234 QRYRRRFEVIVK-----EPESVYQLVSRN-------QMPAGIENYLPLFF-----DEVAT 276

Query: 461 LFEYIPEDSLLFV--DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           LF+Y+P+++ L    D        +  +      R+         L    +   L  E +
Sbjct: 277 LFDYLPKETQLVTLGDIEKSARAHLQEVETRYQDRRVDPLR---PLLEPKELYLLIEELF 333

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
              +P       +P +  +E  +      +I    L D      SA  +++     +   
Sbjct: 334 AAFKPLPRYQFISPTTESVETGKAT----VIDANQLPDI-----SANHKLKQPLLALQDY 384

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLY 603
           AQ   R+L +  ++   E L E L 
Sbjct: 385 AQNAPRMLFSAESEGRREALLELLS 409



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 7/176 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+     +    V + I     +G 
Sbjct: 763 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + + +     R +  H +++  +   ++ D    +F+VLV   +
Sbjct: 823 QVYYLHNNVESIEKCAQGIIDLVPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTI 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +
Sbjct: 883 IETGIDVPSANTIIIERADTFGLAQ----LHQLRGRVGRSHHQAYAYLMTPHPKRM 934



 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 8/159 (5%)

Query: 85  SMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNH----SKDITF 140
           S+   +   +++       +A  + I+    +          R            ++   
Sbjct: 545 SVGADEDAHLNKLGNETWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEIDEEEYAQ 604

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSR-EKVQLLLGVTGSGKTFT---MAKVIEAMQRPA 196
           F     +  + DQ +AI  +L  + S     +L+ G  G GKT      A V     +  
Sbjct: 605 FAQGFPFEETVDQESAIHAVLADMRSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQV 664

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +V+ P  +LA Q Y  FK+ F    V   V        E
Sbjct: 665 VVLVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKE 703


>gi|313892911|ref|ZP_07826488.1| transcription-repair coupling factor [Veillonella sp. oral taxon
           158 str. F0412]
 gi|313442264|gb|EFR60679.1| transcription-repair coupling factor [Veillonella sp. oral taxon
           158 str. F0412]
          Length = 1055

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 114/288 (39%), Gaps = 35/288 (12%)

Query: 161 LKGIHS--REKVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEFKNFF 217
           + G+++  R+   ++ G++GS K+F + +     + +P +++  +K        +   F 
Sbjct: 16  VDGLNAFQRKGKSVIYGLSGSQKSFLLNQAFTTGLTKPVVIVVHDKDHKEMWERDLAFFM 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTD--TYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
           P+  V  F             P TD   +     S+ +Q  +MR  A  +  E    ++ 
Sbjct: 76  PNVPVLSF-------------PITDHVDFTTVARSLEDQGAQMRALALLAWQE-PAVVIA 121

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           ++      + S +      +   + D++E+   L  LV   Y+R D    RG F V GD 
Sbjct: 122 NAEEVTQYVVSPQYLKGQSLHFALNDTIERDTALEQLVTIGYERVDQVEQRGHFAVRGDI 181

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+P + ++   R+  FG++I+ +  F     + I  +++  +       +   +   +
Sbjct: 182 LDIYPVNSDN-PIRIEFFGDEIDTLRFFAVGNQRSIEQIDSYTVTPFFLGKSDADSTLLS 240

Query: 396 MKY-----------IKEELKMRLIELEKEGRLL----EAQRLEQRITY 428
                         I+E LK  L E     +      E QR  +  T 
Sbjct: 241 YVKDGLLIYDEPGRIQEALKKFLKEDSTHRKNHCDWSELQRTVESTTQ 288



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 82/212 (38%), Gaps = 18/212 (8%)

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVY 572
           +++EW       + +SATP    L      + E  +I        PV+       +  V 
Sbjct: 689 KWKEWASNID-VLTLSATPIPRTLHMSLVGVREMSVINTPPEERLPVQTYVVEYDMNLVA 747

Query: 573 DEINLAAQQGLRILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D I     +G ++   V  +      M E L   L +    +   H ++   +  EI+ D
Sbjct: 748 DAIKRELARGGQV-YFVYNRVASINHMGELLEAALPDLRYAIA--HGQMTGRQIEEIMTD 804

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G +DVL+  +++  GLDIP    + I DAD+ G  +    L Q  GR  R+      
Sbjct: 805 FYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQ----LYQMRGRVGRSRRRAYA 860

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
            +     K +  A +    +R K +E   +  
Sbjct: 861 YFMYRPDKMLSEAAE----KRLKAIEEFTELG 888



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 58/308 (18%), Positives = 110/308 (35%), Gaps = 58/308 (18%)

Query: 425 RITYDLEMLETTGSC--------QSIENYS--RYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           RI +  + ++T            + I++Y+   +  G++  +   TL  Y+ +D LL  D
Sbjct: 194 RIEFFGDEIDTLRFFAVGNQRSIEQIDSYTVTPFFLGKSDAD--STLLSYV-KDGLLIYD 250

Query: 475 ESHVTIPQISGMYRGD-FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
           E       +    + D  HRK                      +W+ L     V S T  
Sbjct: 251 EPGRIQEALKKFLKEDSTHRKNHC-------------------DWSEL--QRTVESTTQV 289

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
           ++   Q + I +     P G+      + S   Q+  + DEI    +   +++L +  ++
Sbjct: 290 AFTFMQQRSIGLTGF-NPIGIQGK--TMTSFERQIPLLTDEIKQWHRLNHQVVLVLNNQQ 346

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E +   L   NI   ++HSE           +       V++   LL +G ++P   L
Sbjct: 347 RREGIERALEGENI--AFIHSE-----------EWIAKPNTVVILQGLLTDGFELPNSHL 393

Query: 654 VAILDADKEGFLRSKTSLIQTIGR-----AARNVNSKVILYADTITKSIQLAIDETT--R 706
           V +++ +  G  + K       G+             V+     I K I L   ET    
Sbjct: 394 VVVVEGNIYGQQKRKLRNKPKKGQEINYFTDLTPGDYVVHSMHGIGKYIGLKTIETEGIH 453

Query: 707 RREKQLEH 714
           R   ++ +
Sbjct: 454 RDYIEIAY 461


>gi|309807000|ref|ZP_07700982.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           03V1-b]
 gi|308166620|gb|EFO68817.1| transcription-repair coupling factor [Lactobacillus iners LactinV
           03V1-b]
          Length = 1110

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 102/233 (43%), Gaps = 17/233 (7%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F             P  +T   + +  +      R  A   LL +   
Sbjct: 68  LVELFEENMVHFFPVE----------PLLET---QAAVSSLDELSQRLDAMSFLLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  + I     
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADD 226



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V +       +  
Sbjct: 712 VLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPIQTYVTEETPNIVREACLRELARNG 771

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I       +  +    YL +     R  Y+H  +   +  +I+      KFD+LV   +
Sbjct: 772 QIFFLHNKIQDIDQKVAYLSQLIPEARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTI 831

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+D+P    + + +AD  G L     L   IGR++R   +  +   D +
Sbjct: 832 IETGVDLPNVNTLLVENADTYG-LSQLYQLRGRIGRSSRLAYAYFLYKRDKV 882


>gi|307154808|ref|YP_003890192.1| transcription-repair coupling factor [Cyanothece sp. PCC 7822]
 gi|306985036|gb|ADN16917.1| transcription-repair coupling factor [Cyanothece sp. PCC 7822]
          Length = 1169

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 87/574 (15%), Positives = 185/574 (32%), Gaps = 73/574 (12%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +LL  +   + +Q L G+    K    + + +      +++ P    A +  ++ +    
Sbjct: 18  ELLGKLKRHQALQ-LSGIPRLPKGLIASSLAQTENHNLLIICPTLEEAGRWATQLEAMGW 76

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
                Y  S    Y P    P ++    +   ++   +            +    +V++ 
Sbjct: 77  KTVHFYPTSEGSPYDP--LNPESEMIWGQLQVLSGINNPEAFVQGERENSKQQYALVTTE 134

Query: 279 SCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             +   +   +      +  + G + E K L ++L +  Y+R ++    G +   GD ++
Sbjct: 135 KALQPHLPPPQQLYAYCLNFQQGMTQEVKTLDTALTRLGYERVNLVETEGQWSRRGDIVD 194

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP   E +  R+  FG+++E++ EF P T + +  +  + +   S++     +    + 
Sbjct: 195 IFPVSAE-LPVRLEWFGDELEQLREFDPATQRSLDQITQLTLTPISYFPIIADS----IL 249

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
             ++ L   L                       E LE   +    E   R+L      E 
Sbjct: 250 NPEKVLSPYLS---------------------AEQLEGIENRNFPEGMQRFLGLAY--EK 286

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           P +L +Y+P ++    DE                 +   L      LP         F E
Sbjct: 287 PASLLDYLPPNTFCVFDEVEQCQAHSDRWIEYIEEQWQDL---DPPLPKIHR----IFRE 339

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
              L     ++  +  + E+ + +   ++   RP  +            Q   + + +  
Sbjct: 340 SLELSQQFPILYLSEIAEEVPKTEIPNLDLSSRPLPV---------TPNQFARLAEILRG 390

Query: 578 AAQ-------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             +           I L          L   L E +   +Y+ +          I   + 
Sbjct: 391 KREIYSGINLNKYAIWLVSAQPSRTVSL---LEEHDCPAQYIPNPRDYP----AIDKYQT 443

Query: 631 GKFDVLVGINLLR--EGLDIPECGLVAILDADKEGFLR-SKTSLIQTIGRAARNV----- 682
               + +  + L   EG  +P   +V + D +  G       + ++   RAA        
Sbjct: 444 QDTAIALKYSGLAELEGFILPTYRIVVVTDKEFFGQQTLVTGAYVRKRRRAASKQVNLDK 503

Query: 683 ---NSKVILYADTITKSIQLAIDETTRRREKQLE 713
                 V+     I K I+L I E+      Q  
Sbjct: 504 LRPGDYVVHRHHGIGKFIKLEILESREYVLIQYA 537



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 19/191 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      + E  +  T    PP   R  +T +     + +   I    
Sbjct: 774 VLTLTATPIPRTLYMSLSGVREMSLITT----PPPSRRPIKTHLSPYNSDVIRTAIRNEL 829

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G +I   V      E++   + +     R    H ++   E    +     G+ DVLV
Sbjct: 830 DRGGQIFYVVPRVEGIEEVAAEIRQMVPTARIAIAHGQMDVSELETTMLAFNNGEADVLV 889

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + + DA K G L     L   +GR+    ++ ++          
Sbjct: 890 CTTIIESGLDIPRVNTIIVEDAQKFG-LSQLYQLRGRVGRSGIQAHAWLVY-------PH 941

Query: 698 QLAIDETTRRR 708
           + A+ ET R+R
Sbjct: 942 KAALTETARQR 952



 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 146 DYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVIEAM----QRPAIVMA 200
            Y P+ DQ  A+ ++ + +   R   +L+ G  G GKT    + I        +    +A
Sbjct: 620 PYQPTPDQLKAVQEVKRDLESDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGNKQVAFLA 679

Query: 201 PNKILAAQLYSEFKNFFPH 219
           P  IL  Q Y   K  F  
Sbjct: 680 PTTILTQQHYHTLKERFAP 698


>gi|240169894|ref|ZP_04748553.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
           kansasii ATCC 12478]
          Length = 1238

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 91/523 (17%), Positives = 179/523 (34%), Gaps = 59/523 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             QL+     R     L+G   S +   +A  +  +  P +V+      A  L +E +  
Sbjct: 26  FQQLIARASDRPDDLTLVGPA-SAR-LFVASALARLG-PLLVVTATGREADDLTAELQGV 82

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
               AV  F S+ +    E   P  DT   +       + R+ +     L   +  +VV+
Sbjct: 83  LGG-AVAVFPSW-ETLPHERLSPGVDTVGARLLV----LRRLAYPDDARL-GPSLRVVVT 135

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           +V  +    + +   Q  + L +G  ++   +++ LV+  Y R D+   RG F V G  +
Sbjct: 136 AVRSLLQPMTPQLGRQEPLALSVGQEIDFDGVIARLVELAYTRVDMVGRRGEFAVRGGIL 195

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR--NVETIKIYANSHYVTPRPTLNT 394
           ++F +   +   RV  +G++I E+  F     + I    V+T+   A    +        
Sbjct: 196 DVF-APTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVDTLVAVACRELLLTDDVRVR 254

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A      EL  +               +   ++  L  L        +E     L     
Sbjct: 255 A-----AELAAQ--------HPAAENAVTGSVSDMLAKLAEGIPVDGMEALLPVLHPAQD 301

Query: 455 GEP-PPTLF-EYIPEDSLLFVDESHVTIPQI-----SGMYRGDFHRKATLAEYGFRLPSC 507
           G     TL  + +PE + + + +      +      +G    +          G    + 
Sbjct: 302 GANGAHTLLTDQLPEGTPVLLCDPEKIRTRAADLIKTGREFLEASWSVAALGSGPENQAP 361

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGS---WELEQ-CQGIIVEQIIRPTGLVDPPVEIRS 563
           +D   L    +  L    +  +AT      W L Q     ++E  +RP+         R 
Sbjct: 362 VDVEQLGGSGFAEL--DEVHTAATGSGHPWWTLSQLSGEAVLELDVRPS--PSARGHQRD 417

Query: 564 ARTQVEDVYDEINLAAQQGLRILL---TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
                  +   ++     G  +++   T    RM E LT    E +I    +  +     
Sbjct: 418 IDGIFAMLRAHVST---GGYAVMVAPGTGTAHRMVERLT----ESDIPAAML--DPGATP 468

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           ++ ++   +    D +V   +      +P   LV + ++D  G
Sbjct: 469 KLGLVGVFKGPLHDGIVVPGV------VPGADLVVVTESDLTG 505



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E     T V   +D      L  + 
Sbjct: 809 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGPHDDKQVAAALRREL 864

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +           +    ++ E     R +  H ++        ++     ++D+LV
Sbjct: 865 LRDGQAFYVHNRVSSIDRAAAHVRELVPEARVVVAHGQMPEELLERTVQGFWNREYDILV 924

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +        
Sbjct: 925 CTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPPQAP- 979

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N +  
Sbjct: 980 ---LTETAYDRLATIAQNNELG 998


>gi|282900454|ref|ZP_06308403.1| Transcription-repair coupling factor [Cylindrospermopsis
           raciborskii CS-505]
 gi|281194647|gb|EFA69595.1| Transcription-repair coupling factor [Cylindrospermopsis
           raciborskii CS-505]
          Length = 1171

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 89/522 (17%), Positives = 178/522 (34%), Gaps = 72/522 (13%)

Query: 160 LLKGIHSREKVQLLLGVTGSG---KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           L   ++++ K    LG+ G     K    + +     R   ++      A + Y++ +  
Sbjct: 15  LTTELNNQLKKHQQLGLNGISRLPKNLIASALASQESRDLCIICATLEEAGRFYAQLEAM 74

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
             +    Y  S    YQP  + P T+           Q+  +    + S  +     +++
Sbjct: 75  GWNTVHFYPTSEASPYQP--FDPETELSWG-------QMQVLADLVSNS--DHKSMAIIT 123

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           ++  +   +   E++    + L+       ++    +    Y+R  +    G +   GD 
Sbjct: 124 TIGALQPHLPPRETFKSFCLTLQKDMGYSLEQFGEKITALGYERVSLVETEGQWSRRGDI 183

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK-IRNVETIKIYANSHYVTPRPTLNT 394
           +++FP   E +  R+  FG+DIE+I EF P T +  +  +  I +   S           
Sbjct: 184 VDVFPVACE-LPVRLEWFGDDIEKIREFDPSTQRSALDKINQITLTPTSFAPI------- 235

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
                       L  L+      +      ++  + E++E       +E   R+L     
Sbjct: 236 -----------VLSALKDNALFWQF---SSQLDLNSEVIEN----SGLEGSRRFLGF--A 275

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK-ATLAEYGFRLPSCMDNRPL 513
            + P ++ +Y+P ++L+ +DE    I Q                     +L +      +
Sbjct: 276 FDQPASILDYLPANTLVAIDE----IEQCHAHGDRWVENADEQWLLINDQLSTTFPKIHI 331

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIV----------EQIIRPTGLVDPPVEIRS 563
            FE   CL       S    S   E+  G I           E  I    L   P+ I  
Sbjct: 332 NFE--ECLAKKVSNFSTLYLSEIAEENSGNITYKNAREQTSSESFIPSYNLGGRPLPIHP 389

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q   + D I         + +       +  L   L E +   +++ +        +
Sbjct: 390 --HQFAKLADTIRQERDHKFAVWIISAQPSRSVAL---LQEHDCPAQFIPNPRD----YQ 440

Query: 624 IIRDLRLGKFDVLVGINLLR--EGLDIPECGLVAILDADKEG 663
            I  L++ +  V +  + L   EG+ +P   LV I D +  G
Sbjct: 441 AIDKLQINQTPVALKYSGLAELEGVILPSYRLVIITDREFYG 482



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 94/254 (37%), Gaps = 23/254 (9%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
             + +SATP    L      I E  +  T    PP   R  +T +     + V   I    
Sbjct: 781  VLTLSATPIPRTLYMSLSGIREMSLITT----PPPTRRPIQTHLAPLNPQIVSSAIRQEL 836

Query: 580  QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
             +G ++   V      E+ T  L E     R++  H ++   +    +      + D+LV
Sbjct: 837  DRGGQVFYVVPRVEGIEETTTRLREMIPSGRFVIAHGQMDESQLESTMLTFSNHEADILV 896

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  GLDIP    + I DA + G L     L   +GRA    ++ +           
Sbjct: 897  CTTIIESGLDIPRVNTILIEDAHRFG-LSQLYQLRGRVGRAGIQAHAWLFY-------PK 948

Query: 698  QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV-IDPILLEDAATTNISIDAQQLSLS 756
            Q  + +  R+R + ++   +        +  + ++ I  +     A  +  +DA    L 
Sbjct: 949  QRELSDAARQRLRAIQEFTQLG---SGYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLY 1005

Query: 757  KKKGKAHLKSLRKQ 770
             +  +  ++ +R Q
Sbjct: 1006 MEMLEEAIREIRGQ 1019


>gi|315653944|ref|ZP_07906860.1| transcriptional repair coupling factor [Lactobacillus iners ATCC
           55195]
 gi|315488640|gb|EFU78286.1| transcriptional repair coupling factor [Lactobacillus iners ATCC
           55195]
          Length = 1110

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 101/233 (43%), Gaps = 17/233 (7%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F             P  +T   + +  +      R  A   LL +   
Sbjct: 68  LVELFEENMVHFFPVE----------PLLET---QAAVSSLDELSQRLDAMSFLLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV   YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVHCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  + I     
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADD 226



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V +       +  
Sbjct: 712 VLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPIQTYVTEETPNIVREACLRELARNG 771

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I       +  +    YL +     R  Y+H  +   +  +I+      KFD+LV   +
Sbjct: 772 QIFFLHNKIQDIDQKVAYLSQLIPEARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTI 831

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+D+P    + + +AD  G L     L   IGR++R   +  +   D +
Sbjct: 832 IETGVDLPNVNTLLVENADTYG-LSQLYQLRGRIGRSSRLAYAYFLYKRDKV 882


>gi|309808765|ref|ZP_07702651.1| putative transcription-repair coupling factor [Lactobacillus iners
           LactinV 01V1-a]
 gi|308168001|gb|EFO70133.1| putative transcription-repair coupling factor [Lactobacillus iners
           LactinV 01V1-a]
          Length = 708

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 101/233 (43%), Gaps = 17/233 (7%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F             P  +T   + +  +      R  A   LL +   
Sbjct: 68  LVELFEENMVHFFPVE----------PLLET---QAAVSSLDELSQRLDAMSFLLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV   YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVHCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  + I     
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADD 226


>gi|114330160|ref|YP_746382.1| transcription-repair coupling factor [Nitrosomonas eutropha C91]
 gi|114307174|gb|ABI58417.1| transcription-repair coupling factor [Nitrosomonas eutropha C91]
          Length = 1154

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 151/442 (34%), Gaps = 51/442 (11%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRP---AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           Q   G  GS     +A++     +      V+  N   A +L  E   F P   V     
Sbjct: 14  QRYTGFVGSSDACALAQLANQQNQDNQLLAVITANAQDARRLLEEIPFFAPDLRVSLLPD 73

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
           + +    + + P  D   E+ ++         H    +  +    ++V   + +Y +   
Sbjct: 74  W-ETLPYDVFSPHHDLISERLATF--------HQIVNNACD---VLIVPVTTALYRMPPR 121

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           E  +     +K   +++ +   S +    Y      I  G + + G  I++FP     + 
Sbjct: 122 EFLAAYSFFIKQKSTLDLQSFRSQMSLAGYSHVSQVISPGEYSIRGGLIDLFPM-GSPLP 180

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
           +R+ +F ++IE I  F   T + I  V  I++     +       +      +E+ +   
Sbjct: 181 YRIDLFDDEIESIRTFDADTQRSIYPVNEIRLLPAREFPLDDTGRSRFRTGFREKFE--- 237

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                 G            ++  + +        IE Y          E   TLF+Y+P+
Sbjct: 238 ------GDPTR--------SWLYQEISKGNIPAGIEYYLPLFF-----EQTATLFDYLPQ 278

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
            S L +   H  I      +  D   +  L        S +D   L   +   L      
Sbjct: 279 HSTLCL---HGEIASTIENFWQDTRSRFQLMR------SDIDRPLLPPADLFLLEDQFYG 329

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVEDVYDEINLAAQQGLRIL 586
                 ++   + QG   + I  P  L  P V + R A   +E +   I+   Q G RIL
Sbjct: 330 YLK---AYSRIEIQGGDQQTISEPFSLPLPSVRVDRRAADPIEQLTTFISTFTQDGGRIL 386

Query: 587 LTVLTKRMAEDLTEYLYERNIR 608
           L   +    E + EYL E  ++
Sbjct: 387 LLAESLGRRELMAEYLREYGLQ 408



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 76/194 (39%), Gaps = 17/194 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +      +  + +      ++
Sbjct: 762 VLTLTATPIPRTLAMSLEGLRDFSVIATAPQRRLAIRTFVHPYTEGI--IREACLRELKR 819

Query: 582 GLRILLT----VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +I          + M   L + L E  I +   H +++  E   ++RD    +F++L+
Sbjct: 820 GGQIYFLYNEVSTIQNMYTKLIKLLPEAKINIA--HGQMRESELEHVMRDFYQQRFNMLL 877

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  ADK G  +    L Q  GR  R+ + +   Y  T  K+ 
Sbjct: 878 CTTIIETGIDVPTANTIIIHRADKFGLAQ----LHQLRGRVGRS-HHQAYAYLLTPEKAA 932

Query: 698 QLAIDETTRRREKQ 711
            L I    R    Q
Sbjct: 933 -LTIQAIRRLEAIQ 945


>gi|312874291|ref|ZP_07734323.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2052A-d]
 gi|311090164|gb|EFQ48576.1| transcription-repair coupling factor [Lactobacillus iners LEAF
           2052A-d]
          Length = 1110

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 102/233 (43%), Gaps = 17/233 (7%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F             P  +T   + +  +      R  A   LL +   
Sbjct: 68  LVELFEENMVHFFPVE----------PLLET---QAAVSSLDELSQRLDAMSFLLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  + I     
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADD 226



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V +       +  
Sbjct: 712 VLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPIQTYVTEETPNIVREACLRELARNG 771

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I       +  +    YL +     R  Y+H  +   +  +I+      KFD+LV   +
Sbjct: 772 QIFFLHNKIQDIDQKVAYLSQLIPEARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTI 831

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+D+P    + + +AD  G L     L   IGR++R   +  +   D +
Sbjct: 832 IETGVDLPNVNTLLVENADTYG-LSQLYQLRGRIGRSSRLAYAYFLYKRDKV 882


>gi|329920532|ref|ZP_08277264.1| transcription-repair coupling factor [Lactobacillus iners SPIN
           1401G]
 gi|328936208|gb|EGG32661.1| transcription-repair coupling factor [Lactobacillus iners SPIN
           1401G]
          Length = 1110

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 101/233 (43%), Gaps = 17/233 (7%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F             P  +T   + +  +      R  A   LL +   
Sbjct: 68  LVELFEENMVHFFPVE----------PLLET---QAAVSSLDELSQRLDAMSFLLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV   YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVHCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  + I     
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADD 226



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V +       +  
Sbjct: 712 VLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPIQTYVTEETPNIVREACLRELARNG 771

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I       +  +    YL +     R  Y+H  +   +  +I+      KFD+LV   +
Sbjct: 772 QIFFLHNKIQDIDQKVAYLSQLIPEARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTI 831

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+D+P    + + +AD  G L     L   IGR++R   +  +   D +
Sbjct: 832 IETGVDLPNVNTLLVENADTYG-LSQLYQLRGRIGRSSRLAYAYFLYKRDKV 882


>gi|221195325|ref|ZP_03568381.1| transcription-repair coupling factor [Atopobium rimae ATCC 49626]
 gi|221185228|gb|EEE17619.1| transcription-repair coupling factor [Atopobium rimae ATCC 49626]
          Length = 1150

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/312 (19%), Positives = 118/312 (37%), Gaps = 37/312 (11%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           L V    +   +A +     RP +++   +  A +       +  ++ V  +    D   
Sbjct: 31  LAVAQGARPLVLASIWAQCPRPTMLVVAGEEAADRTARALAAWLGNDVVSRYPDRRD--- 87

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQ 292
                     Y   +++ ++    MR +A   L     CIVV+S   +   +  V S   
Sbjct: 88  ----------YPWSDATPDDACIGMRCNAVARLAAGEKCIVVASAHALLRRVPPVGSGYF 137

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
           +     +GD V  +E+ + LV   Y       + G+F V GD++++FP+     A R+  
Sbjct: 138 VPSTFSVGDEVLFEEVPALLVGMGYVDTGEVDVPGSFHVHGDTVDVFPAQS-TCAVRLEF 196

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG++I+ I      TGQ I  +E++ +           T+  A    +  L  R  E   
Sbjct: 197 FGDEIDRIRRMVAATGQTIGELESVTVVPCRELAFTTETIRNA----ERALYNRAQENSA 252

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
                        +  DLE+++   S  ++E Y   L G+       +  E+I  ++L+ 
Sbjct: 253 -------------VAADLELIQRGASAPALERYLPILYGKT-----ASPLEHISPETLVV 294

Query: 473 VDESHVTIPQIS 484
           + E         
Sbjct: 295 LAEPRSLFDDCQ 306



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 11/196 (5%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E+   +R     + +SATP    ++    G+    +I        PV++       + V 
Sbjct: 750 EQLKNMREQVDVLTLSATPIPRTMQMAMSGVRDMSLIMTPPPGRKPVKVTVGEYDPDLVS 809

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRL 630
             I     +  ++          +D    + E     R    H ++   E  +++   + 
Sbjct: 810 AAIRAELARKGQVYYVSNRVTTIDDAVSRVNEAAPEARVGVAHGQMSAREVEDVMLRFQE 869

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            + DVLV   ++  G+D P    + I D+++ G  +    L Q  GR  R        + 
Sbjct: 870 HEIDVLVATTIIESGIDNPHTNTLIIEDSERLGLAQ----LYQLKGRVGRGRQQAYAYFM 925

Query: 691 DTITKSIQLAIDETTR 706
                 + L  + T R
Sbjct: 926 FP--AEMPLTEEATAR 939


>gi|229589088|ref|YP_002871207.1| transcription-repair coupling factor [Pseudomonas fluorescens
           SBW25]
 gi|229360954|emb|CAY47814.1| transcription-repair coupling factor [Pseudomonas fluorescens
           SBW25]
          Length = 1149

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 126/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E   F P   V +F          
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E  +  +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L IG  ++ +++ + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPM-GSKLPYRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P   + I  V++IK+     +   +     A+   K   + R        
Sbjct: 187 DEIETLRTFDPENQRSIDKVDSIKLLPAREFPLQKD----AVTRFKARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R     + L +  +   IE Y          +   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRCPIFQDLSSGITPAGIEYYLPLFF-----DETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 10/123 (8%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DL E + E  I +   H +++  +  +++ D    +F+VL+   ++  G+D+P    + I
Sbjct: 830 DLAELVPEARIAIG--HGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 887

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
             ADK G  +    L Q  GR  R+ +              +  I     +R + + + +
Sbjct: 888 ERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RQQITSDAEKRLEAIANTQ 939

Query: 717 KHN 719
              
Sbjct: 940 DLG 942


>gi|91776101|ref|YP_545857.1| transcription-repair coupling factor [Methylobacillus flagellatus
           KT]
 gi|91710088|gb|ABE50016.1| transcription-repair coupling factor [Methylobacillus flagellatus
           KT]
          Length = 1134

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 93/509 (18%), Positives = 168/509 (33%), Gaps = 84/509 (16%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207
           P+  Q + I  L  G  S    QL       S K             P +V+  N   A 
Sbjct: 8   PAPGQTSRINPLTPGTDSLALAQLATHRAETSAKA------------PIVVVTSNAFDAQ 55

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           +L  E   + P   V               +P  +T      S +  +   R +    + 
Sbjct: 56  RLLEEIPWYAPQLRVHL-------------LPDWETLPYDHFSPHPDLISERLATLYQIS 102

Query: 268 ERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
           + +  IV+  +S  +  +      +     LK G +++ + L +      Y      +  
Sbjct: 103 QNSCDIVLVPISTALLRLPPKAYLAAHTFILKKGQTLDIEALRNQCANAGYHHVSQVMGP 162

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           G F V G  I++FP     + +R+ +F ++IE I  F   T + +  V  I++     + 
Sbjct: 163 GEFSVRGGLIDLFPMGSA-LPYRLDLFDDEIETIRTFDVDTQRSLYPVADIRLLPAKEFP 221

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
                +    +  +E              + E      RI  D+     +G    IE Y 
Sbjct: 222 LDEAGIARFRQSFRE--------------MFEGDPSRSRIYKDVSKGIASG---GIEWYL 264

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS 506
                    E   TL +Y+P D+LL +  +     Q    +     R   L         
Sbjct: 265 PLFF-----EQTATLLDYVPADALLCLHGNLDLASQ--AFWHDAQSRYRQL--------- 308

Query: 507 CMD-NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565
             D  RP        L+P T+++ A    +        +   +   + L    VE R + 
Sbjct: 309 AHDPERP-------ILKPETLLIKAEE-FFSQSHAWARMQLSLDNDSKLPALEVE-RRSE 359

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
             +  + D I        RIL+   +    E + +  ++  I   Y  SE          
Sbjct: 360 QPLHKLKDYIRRFKG---RILIAAESLGRRETMAQLFHDHGIS--YETSEDWQ------- 407

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLV 654
              + G   V++GI+ L  G  + +  ++
Sbjct: 408 -SFQAGTAPVMLGISPLHGGFRVDDITVI 435



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           M E L + L E  I +   H +++  E   ++RD    +F++L+   ++  G+D+P    
Sbjct: 817 MKEKLEKILPEARIGIA--HGQLRERELEHVMRDFYQQRFNLLLCTTIIETGIDVPTANT 874

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           + +  AD  G  +    L Q  GR  R+ +           ++I
Sbjct: 875 IIMNRADMFGLAQ----LHQLRGRVGRSHHQAYAYLLTDPDRNI 914


>gi|146296229|ref|YP_001180000.1| transcription-repair coupling factor [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409805|gb|ABP66809.1| transcription-repair coupling factor [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 1143

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 80/499 (16%), Positives = 171/499 (34%), Gaps = 60/499 (12%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           ++ K I  +    L+  +   GK   +  + +   +  + +   K   ++    FKN F 
Sbjct: 13  KIEKAISKKSLPILVTNLGEMGKALLVHAICQKFNKKVLFITHQKSK-SEWEKRFKNLFD 71

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYI-EKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
              V            E   P  +++   K+S I    + +R        E  D +++S 
Sbjct: 72  KVIVLQ----------ERENPLINSFAKSKDSEIQRAEEFVRI-----FEEGFDVLILSP 116

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            + +        +    + L+    +  +E L++L +  Y+R  +   +G F   G  ++
Sbjct: 117 QNLLEKY---SDFKFESLILEENKELGFEEFLTTLTRYGYERVKVVEKKGQFSQKGGIVD 173

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           I+P        R+  FG+ I+ I  F   T +    V  +KIY    +       +  +K
Sbjct: 174 IYPIFS-KYPVRIEFFGDTIDTIRYFDVETQKSFERVCYVKIYKACEWDLSID-FSDGIK 231

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            I  + K    +L+ + +    + LE+     ++  E       I+    Y         
Sbjct: 232 KIVADFK----KLQNKLKGDARKNLEESFKDVIDGAEL-----KIDRLYPYYYQNFR--- 279

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
             ++F+    D  + +DE       +             L E G+ L          ++ 
Sbjct: 280 --SIFDIFG-DCFVIIDEYTQVYGSLKTFEEQTEDLYKDLLEKGYVLTKMAGCYFKVYDI 336

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
              L  + I+ +      E++          ++     +   EI S   Q E + ++I  
Sbjct: 337 LEKLSSSIILQTFAQSIKEIQ----------VKDIFSFNNLREIPSYNGQKELLIEDIKY 386

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              +G  I +   ++   EDL   L +  I             + + +   R G +   +
Sbjct: 387 YQSKGYLINVFAGSETSLEDLKSELEKSRIE----------FNKADEVLTDRQGVY---L 433

Query: 638 GINLLREGLDIPECGLVAI 656
               + +G++I     V +
Sbjct: 434 LPRSVEKGIEIQNLKWVCL 452



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 76/187 (40%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    II        PV+        + + + I     +G 
Sbjct: 756 VLTLTATPIPRTLNMALLGIRDLSIIEDPPEDRFPVQTFVMEYNEKVIKEAILKEVSRGG 815

Query: 584 RILLTVLTKRMAEDLT---EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           ++       +  E++    + L   +I++ Y H ++   +  E++ D   GK+DVLV   
Sbjct: 816 QVFYLYNRVKDIEEVVNRLQALLGEDIKIAYAHGQMDERQLEEVLIDFINGKYDVLVCTT 875

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + + DAD+ G  +    L Q  GR  R+       +     K +   
Sbjct: 876 IIESGVDMPNVNTLIVEDADRLGLAQ----LYQLRGRVGRSNKLAYAYFTFRKDKVLS-- 929

Query: 701 IDETTRR 707
            +E  +R
Sbjct: 930 -EEAAKR 935


>gi|291569965|dbj|BAI92237.1| transcriptional-repair coupling factor [Arthrospira platensis
           NIES-39]
          Length = 1167

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 81/523 (15%), Positives = 173/523 (33%), Gaps = 86/523 (16%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
           A+L+  ++ ++ +  L G+    K    + + +      +V+      A +  ++ +   
Sbjct: 17  AELITKLNQQQALH-LNGLPRVPKGLVASALAQEAGLNLLVVTATLEEAGRWSAQLEVMG 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
                 Y  S    Y+P             E  +  Q+  +    TR+  + +   VV++
Sbjct: 76  WQTVHFYPTSEASPYEPS----------YSEEMVWGQMQVLADLVTRNGGKADRVAVVAT 125

Query: 278 VSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
              +   +  V  +    + LK+G +   K +   L +  Y+R  +    G +   GD +
Sbjct: 126 ERSLQPHLPPVSDFQSYCLPLKLGMTCAGKTIDQKLAQLGYQRVTVVETEGQWSRRGDIV 185

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++FP    ++  R+  FG+++E + E  P+T + +  V+ + +   +H+        +  
Sbjct: 186 DVFPV-ASELPVRLEWFGDELERMRELDPVTQRSLDRVDQLILTP-THFSPIIEGNLSLS 243

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
               E LK                      + D+   +T            +L G    +
Sbjct: 244 TETLETLK----------------------SEDISDSKTG---------LSHLLGLAY-Q 271

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG----DFHRKATLAEYGFRLPSCMDNRP 512
            P +L +Y+PE +L  +DE           +        + +  L              P
Sbjct: 272 KPASLIDYLPELTLAVIDEPDQCAGHGDRWFEHIDEQWQNEQGKLVTAE----GISLEIP 327

Query: 513 LRFEEWN------CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
              + +         R   + +S      EL   +  ++        L   PV +     
Sbjct: 328 AIHQCFQESLAAVEHRFDRLYLS------ELSDYKSSLISPSTASINLASRPVPVTP--H 379

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-----HSEVKTLER 621
           Q   + + I     +   + L       +  L   L E +   +++     +  + +L R
Sbjct: 380 QFGKIAEMIREQRDRQFNVFLISAQPSRSVAL---LSEHDCPSKFIPNPRDYPAIDSLIR 436

Query: 622 IEIIRDLRLGKFDVLVGINLLR-EGLDIPECGLVAILDADKEG 663
              I          L    L   EG  +P   LV + D +  G
Sbjct: 437 NTPI---------ALKYTGLAELEGFILPTFRLVIVTDREFYG 470



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 73/196 (37%), Gaps = 15/196 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I E  +  T    PP   R  +T +     E +   I    
Sbjct: 769 VLTLTATPIPRTLYMALSGIREMSLITT----PPPSRRPIKTHLGPLNQETIRAAICQEL 824

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      E+ +  + E     R    H +++  E   I+     G+ D+LV
Sbjct: 825 DRGGQVFYVVPRIEGIEEKSAAIREMVPSARLAIAHGQMEAGELESIMLTFSAGEADILV 884

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + + DA K G  +    L Q  GR  R            I    
Sbjct: 885 CTTIIESGLDIPRVNTILVEDAHKFGLGQ----LYQLRGRVGRAGAQAHAWLFYPIKGDG 940

Query: 698 QLAIDETTRRREKQLE 713
           Q A+ E   +R + ++
Sbjct: 941 QAALTEDAVKRLRAIK 956


>gi|330808512|ref|YP_004352974.1| transcription-repair coupling factor [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376620|gb|AEA67970.1| Transcription-repair coupling factor [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1149

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 126/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E   F P   V +F          
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E  +  +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPTQFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L IG  ++ +++ + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPM-GSKLPYRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P   + I  V++I++     +   +     A+   K   + R        
Sbjct: 187 DEIETLRTFDPENQRSIDKVQSIRLLPAKEFPLQKD----AVTRFKARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R     + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRCPIFQDLSSGITPAGIEYYLPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 10/123 (8%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DL E + E  I +   H +++  E  +++ D    +F+VL+   ++  G+D+P    + I
Sbjct: 830 DLAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIII 887

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
             ADK G  +    L Q  GR  R+ +              +  I     +R + + + +
Sbjct: 888 ERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RQQITPDAEKRLEAIANTQ 939

Query: 717 KHN 719
              
Sbjct: 940 DLG 942


>gi|256389420|ref|YP_003110984.1| transcription-repair coupling factor [Catenulispora acidiphila DSM
           44928]
 gi|256355646|gb|ACU69143.1| transcription-repair coupling factor [Catenulispora acidiphila DSM
           44928]
          Length = 1182

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 86/524 (16%), Positives = 162/524 (30%), Gaps = 82/524 (15%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +    L    S + F +A +  A     RP + +      A  L +  +       V  F
Sbjct: 28  RTSFDLAAPRSVRPFALAALARAQGPAGRPVLAVTATGREAEDLVAALRGLLDPETVVDF 87

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
            S+ +    E   PR+DT   + +     + R+ H    +       +VV+ +  +    
Sbjct: 88  PSW-ETLPHERLSPRSDTVGRRLAV----LRRLVHPDAATEGAGALKVVVAPIRSVLQPQ 142

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                  + V  + G  ++  +L++ L    Y R D+   RG F V G  +++FP   E+
Sbjct: 143 VKGLADLVPVAARTGAEIDLDDLVNRLAAAAYTRTDLVDKRGEFAVRGGIVDVFPP-TEE 201

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETI-KIYANSHYVTPRPTLNTAMKYIKE--E 402
              R+  +G+ IEEI  F     + +   E           +        A   +++  E
Sbjct: 202 HPLRLEFWGDQIEEIRYFKVADQRSLEVAEHGLWAPPCRELLLTDEVRKRAAALMEDHPE 261

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
           L   L +                       +      + +E+ +  L           L 
Sbjct: 262 LADILGK-----------------------VSEGIGVEGMESLAPVLVDDMEL-----LI 293

Query: 463 EYIPEDSLLFVDESHVTIPQISGMYRG-----DFHRKATL------AEYGFR----LPSC 507
           + +P  S + + +      + + +        D    AT        + G      L S 
Sbjct: 294 DLLPAGSPIVLCDPERVRTRAADLAATSAEFLDASWAATAGGGQTPIDLGAASLKDLASV 353

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
            ++       W  L P    +   P     E  +    EQ    TG              
Sbjct: 354 REHAITLGLPWWSLTPFAPDLELLPEEDATEISEIHDTEQYGGDTGRA------------ 401

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
                 ++     +G R++L       A+ L E L   +I  RY+  E+ T+    +   
Sbjct: 402 ----LADVRARISEGWRVVLVTQGHGSADRLVEVLKGADIGARYV-PELDTVPEPAL--- 453

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
                    V    +  G    +  L  I + D  G   +   +
Sbjct: 454 -------ATVATASIEHGFIAADLKLWVITEQDVSGQRTATKDM 490



 Score = 38.9 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 66/204 (32%), Gaps = 23/204 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART--------QVEDVYDEIN 576
            + +SATP    LE     I E     + +  PP E     T        Q+        
Sbjct: 784 VLTMSATPIPRTLEMAVTGIREM----STIQTPPEERHPVLTFVGPYEERQISAAIRREL 839

Query: 577 LAAQQGLRILLTVLTKRMAE-DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           L   Q   I   V +   A   L   + E  I     H ++      ++I D    ++DV
Sbjct: 840 LREGQAFYIHNRVESIDRAASRLRALVPEARIATA--HGQMNEHVLEKLIVDFWNKEYDV 897

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  G+DI     + +  AD  G  +    L Q  GR  R        +     K
Sbjct: 898 LVCTTIVESGIDITNANTLIVERADNFGLSQ----LHQLRGRVGRGRERAYSYFTYPPEK 953

Query: 696 SIQLAIDETTRRREKQLEHNKKHN 719
                + ET   R   +  +    
Sbjct: 954 P----LTETAHERLATIAQHTDLG 973


>gi|30248039|ref|NP_840109.1| mfd: transcription-repair coupling factor [Nitrosomonas europaea
           ATCC 19718]
 gi|30179924|emb|CAD83919.1| mfd: transcription-repair coupling factor [Nitrosomonas europaea
           ATCC 19718]
          Length = 1154

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 157/440 (35%), Gaps = 54/440 (12%)

Query: 174 LGVTGSGKTFTMAKVIEAMQ--RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
            G+ GS     +A++       +   V+  + + A +L  E   F P   V     + + 
Sbjct: 17  TGLEGSSDACALARLANRNPAGQLLAVITASALDAQRLLEEIPFFAPDLRVSLLPDW-ET 75

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
              + + P  D   E+ ++      ++ H+A   L       ++   + +Y +   E  +
Sbjct: 76  LPYDIFSPHQDLISERLATF----YQIAHNACDVL-------IIPVTTALYRMPPREFLA 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
                +  G +++ +   S +    Y      +  G + + G  I++FP     + +R+ 
Sbjct: 125 AHSFFVNQGSTLDLQSFRSQMSLAGYSHVSQVLSPGEYSIRGGLIDLFPM-GSPLPYRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F ++IE I  F   T + I  V+ I++     +       +      +E+ +       
Sbjct: 184 LFDDEIESIRTFDVDTQRSIYPVKEIRLLPAREFPLDDNGRSRFRTGFREKFE------- 236

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             G      RL Q I+              IE Y          E   TLF+Y+ + S +
Sbjct: 237 --GDPTRC-RLYQEISK-------GNIPAGIEYYLPLFF-----EQTATLFDYLAQHSTV 281

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFR--LPSCMDNRPLRFEEWNCLRPTTIVVS 529
            +       P I   ++    R   +     R  LP    +  L  +++           
Sbjct: 282 CL--HGEITPAIENFWQDTRSRYQLMRNDPDRPLLPPM--DLFLPEDQFYGYLK------ 331

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVEDVYDEINLAAQQGLRILLT 588
               S++  +       +  +P     PPV + R A   +E +   ++   Q+G R+LL 
Sbjct: 332 ----SYKRIEMHTGQQVKTDKPFARSLPPVRVDRRASNPIEQLTAFVHTFTQKGGRVLLL 387

Query: 589 VLTKRMAEDLTEYLYERNIR 608
             +    E + EYL E  ++
Sbjct: 388 AESMGRRELMAEYLREYGLK 407



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 17/199 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +      +  + +      ++
Sbjct: 761 VLTLTATPIPRTLAMSLEGLRDFSVIATAPQRRLAIRTFVHPYSEGI--IREACLRELKR 818

Query: 582 GLRILLT----VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +I          + M   LT  L E  I +   H +++  E   ++RD    +F++L+
Sbjct: 819 GGQIYFLYNEVSTIQNMYTRLTTLLPEARINIA--HGQMRESELEHVMRDFYQQRFNLLL 876

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +           K+ 
Sbjct: 877 CTTIIETGIDIPTANTIIIHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPEKAA 932

Query: 698 QLAIDETTRRREKQLEHNK 716
                + TRR E      +
Sbjct: 933 LTT--QATRRLEAIQAMEE 949


>gi|289679717|ref|ZP_06500607.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           syringae FF5]
          Length = 444

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 126/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGATLSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E     +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304


>gi|284054183|ref|ZP_06384393.1| transcription-repair coupling factor [Arthrospira platensis str.
           Paraca]
          Length = 1152

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 81/523 (15%), Positives = 173/523 (33%), Gaps = 86/523 (16%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
           A+L+  ++ ++ +  L G+    K    + + +      +V+      A +  ++ +   
Sbjct: 2   AELITKLNQQQALH-LNGLPRVPKGLVASALAQEAGLNLLVVTATLEEAGRWSAQLEVMG 60

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
                 Y  S    Y+P             E  +  Q+  +    TR+  + +   VV++
Sbjct: 61  WQTVHFYPTSEASPYEPS----------YSEEMVWGQMQVLADLVTRNGGKADRVAVVAT 110

Query: 278 VSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
              +   +  V  +    + LK+G +   K +   L +  Y+R  +    G +   GD +
Sbjct: 111 ERSLQPYLPPVSDFQSYCLPLKLGMTCAGKTIDQKLAQLGYQRVTVVETEGQWSRRGDIV 170

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++FP    ++  R+  FG+++E + E  P+T + +  V+ + +   +H+        +  
Sbjct: 171 DVFPV-ASELPVRLEWFGDELERMRELDPVTQRSLDRVDQLILTP-THFSPIIEGNLSLS 228

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
               E LK                      + D+   +T            +L G    +
Sbjct: 229 TETLETLK----------------------SEDISDSKTG---------LSHLLGLAY-Q 256

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG----DFHRKATLAEYGFRLPSCMDNRP 512
            P +L +Y+PE +L  +DE           +        + +  L              P
Sbjct: 257 KPASLIDYLPELTLAVIDEPDQCAGHGDRWFEHIDEQWQNEQGKLVTAE----GISLEIP 312

Query: 513 LRFEEWN------CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
              + +         R   + +S      EL   +  ++        L   PV +     
Sbjct: 313 AIHQCFQESLAAVEHRFDRLYLS------ELSDYKSSLISPSTASINLASRPVPVTP--H 364

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-----HSEVKTLER 621
           Q   + + I     +   + L       +  L   L E +   +++     +  + +L R
Sbjct: 365 QFGKIAEMIREQRDRQFNVFLISAQPSRSVAL---LSEHDCPSKFIPNPRDYPAIDSLIR 421

Query: 622 IEIIRDLRLGKFDVLVGINLLR-EGLDIPECGLVAILDADKEG 663
              I          L    L   EG  +P   LV + D +  G
Sbjct: 422 NTPI---------ALKYTGLAELEGFILPTFRLVIVTDREFYG 455



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 73/196 (37%), Gaps = 15/196 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I E  +  T    PP   R  +T +     E +   I    
Sbjct: 754 VLTLTATPIPRTLYMALSGIREMSLITT----PPPSRRPIKTHLGPLNQETIRAAICQEL 809

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      E+ +  + E     R    H +++  E   I+     G+ D+LV
Sbjct: 810 DRGGQVFYVVPRIEGIEEKSAAIREMVPSARLAIAHGQMEAGELESIMLTFSAGEADILV 869

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + + DA K G  +    L Q  GR  R            I    
Sbjct: 870 CTTIIESGLDIPRVNTILVEDAHKFGLGQ----LYQLRGRVGRAGAQAHAWLFYPIKGDG 925

Query: 698 QLAIDETTRRREKQLE 713
           Q A+ E   +R + ++
Sbjct: 926 QAALTEDAVKRLRAIK 941


>gi|302339041|ref|YP_003804247.1| transcription-repair coupling factor [Spirochaeta smaragdinae DSM
           11293]
 gi|301636226|gb|ADK81653.1| transcription-repair coupling factor [Spirochaeta smaragdinae DSM
           11293]
          Length = 1128

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 92/529 (17%), Positives = 186/529 (35%), Gaps = 104/529 (19%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           A   L + I S     +L G  G    + +       +   +V+ P +  A+QL  +  +
Sbjct: 18  AKNDLFEQIRSDHFPVVLEGPEGFFLAYLIESFFREQKSTILVVTPTEQEASQLVGDL-S 76

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
                A  +              P  +      + I+  +   R      +L+ +  I+V
Sbjct: 77  LITDRAYAF--------------PWWEKVAYSGNRIHTHVAAERLHYLVQMLKGDHVILV 122

Query: 276 SSVSC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +S+   +  +   ES  Q +V + IG + +   L   LV   Y +     +RG F + G+
Sbjct: 123 ASLRAFLTPVPPPESIKQTLVPITIGGAFDPISLRDRLVSYGYTKVPKVTVRGEFALRGE 182

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++IF    ED   R+    +++E+I+ F   T +    ++ + +Y              
Sbjct: 183 VLDIFLG-GEDEPVRIVFEWDEVEKITRFDVDTQKSTEELKRVTLYPFHEL--------- 232

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
               I  + ++R++E+       +   L        E L   G C+  EN+         
Sbjct: 233 ----IWSDERIRMLEVNLPPSQQKKAFL--------EELAAKGGCRDEENFF-----AAS 275

Query: 455 GEPPPTLFEYIPEDSLLFV--DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
             PP TL +Y+ +D++L +  +E  ++  Q  G    + +RKA                 
Sbjct: 276 FNPPGTLLDYLNDDAMLLLFEEERLISGAQTLGKEYRELYRKA----------------- 318

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII------RPTGLVDPPVE-IRSAR 565
            R E     +P TI++      +E     G   + +I      +  G +  PV   RS  
Sbjct: 319 -RSEGVPAPKPETILL-----DYE-RLSSGHAKKLVIPAIKDAQADGRMRFPVTGPRSFF 371

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
             ++ +  E+      G RI +   +                             R+  +
Sbjct: 372 GNMQYLRSELENLKDSGYRITIFAES------------------------DSQAARVRQL 407

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
               +G  ++ +    +  G  +PE   +AI + +  G  +   + ++ 
Sbjct: 408 ----VGDEEISIVAAPISSGFSLPELKFMAIQENEIFGRRKRIPASVKR 452



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 70/191 (36%), Gaps = 19/191 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA----- 579
           ++ +SATP    L      I +  +  T   +     R   T +++  +E+   A     
Sbjct: 738 SLSLSATPIPRTLHMSLLKIRDISLLTTAPNNR----RPIETTIQEFDEELVAKAIRREM 793

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++            +  +L      + V   H ++ + +  +I+     G F VL+
Sbjct: 794 DRGGQVFFLHNRVETLPQVRRFLERLIPEVFVEIAHGQMSSSQLEDIMHRFIHGSFQVLL 853

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+  S             
Sbjct: 854 ATTIIENGIDIPNVNTIIIDRADMYGISQ----LYQLRGRVGRSDRSSYAYLFYPE---- 905

Query: 698 QLAIDETTRRR 708
           Q ++ E   +R
Sbjct: 906 QRSLSEIAMKR 916


>gi|166031178|ref|ZP_02234007.1| hypothetical protein DORFOR_00864 [Dorea formicigenerans ATCC
           27755]
 gi|166029025|gb|EDR47782.1| hypothetical protein DORFOR_00864 [Dorea formicigenerans ATCC
           27755]
          Length = 1114

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 103/246 (41%), Gaps = 18/246 (7%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             ++K       V +L G   S KT  M  + +       +   ++  A Q+Y E++  F
Sbjct: 15  EDIVKKKKEAPGVLMLTGCVNSQKTHMMYALSDGCCYKV-IACSSEAKAKQIYEEYR--F 71

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
              A+ ++             P  D    +    ++++   R    +++L+     VV+S
Sbjct: 72  LDAAISFY-------------PAKDLLFYQADIRSKELVSQRMQVIQAVLKGEPITVVAS 118

Query: 278 VSC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
               +  +   E     ++++   +++   EL   L +  Y R+      G F V G  +
Sbjct: 119 FDAFMDALLPKEMIKSRVIKICSDETLNLDELSVKLAQCGYDREIEVAGPGQFAVRGGIL 178

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +++P   E++  R+ ++G++++ I  F P T + I  ++ ++++  + +        + +
Sbjct: 179 DVYPL-TEELPVRIELWGDEVDSIRTFDPETQRSIEKLDEVEVFPATEFPEEEEKRVSFL 237

Query: 397 KYIKEE 402
            Y ++E
Sbjct: 238 DYFEKE 243



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 74/186 (39%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      I +  +      D  P++        E V + I     +  
Sbjct: 715 VLTLTATPIPRTLHMSLIGIRDMSVLEEAPQDRLPIQTYVMEYNDEMVREAIERECARNG 774

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++           ++T ++ +    + V + H ++K  E  +I+ D   G  DVLV   +
Sbjct: 775 QVYYVYNRVEDIAEVTAHIQKLVPELNVSFAHGQMKEHELEKIMYDFINGDIDVLVSTTI 834

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-- 699
           +  GLDI     + I DAD+ G L     L   +GR+ R   + ++   D + K I    
Sbjct: 835 IETGLDISNVNTMIIHDADRLG-LSQLYQLRGRVGRSGRMAYAFLLYRKDKLLKEIAEKR 893

Query: 700 --AIDE 703
             AI E
Sbjct: 894 LAAIRE 899


>gi|86608683|ref|YP_477445.1| transcription-repair coupling factor [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557225|gb|ABD02182.1| transcription-repair coupling factor [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 1158

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/513 (15%), Positives = 164/513 (31%), Gaps = 68/513 (13%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   + +L   + SR +   L G     K    + + +   R  +V+      A +  ++
Sbjct: 12  QSGLMQELAARLRSRRQAD-LQGAGRIPKGLIASALAQQEGRSLLVVTATLEEAGRWTAQ 70

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            +     +   Y  S    Y+P    P  +    +   + + +             +   
Sbjct: 71  LEGMGWESVQLYPTSEASPYEPFDLEP--ELVWGQFQVLADCLQ-----------GKKGM 117

Query: 273 IVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V++   +   +   E      +QL+ G  +  ++L   L +  Y+R  +    G +  
Sbjct: 118 AIVATERALQPHLPPPEVLRAFCLQLEPGLEMFPQQLGQQLTRLGYQRVSLVESEGQWSQ 177

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            GD +++FP   E    R+  FGN++E + EF P++ +    +  + +    +     P 
Sbjct: 178 RGDILDVFPVACE-WPVRLEWFGNELERLREFDPVSQRSQDGIPHVWLTPTGYGPILWPA 236

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           L      + + L+ +L +                              + +  +   L  
Sbjct: 237 LQEKADQLSQGLRQQLEQSPTP-------------------------PEGLRRFLGLLY- 270

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
               +PP  L  Y+  ++L+ +DE                 +          L       
Sbjct: 271 ----DPPANLLSYLDPEALILIDEPEQCQAHSQQWLYHAQEQWKQAQVAEPALQPFHRPF 326

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            L   +W+   P  +  +  P            ++   RP         + +A  Q   +
Sbjct: 327 DLHAPDWDP-FPCLLARTFAPAGE-----AEAALDLKSRP---------VPTAPHQFGSL 371

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
              +    +Q L++ +          L   L E +   +Y+       +   I R L+  
Sbjct: 372 AKTLREYRKQQLQVWILSAQPSRTVAL---LQEHDCPAQYV---PNPKDFPAIERQLQSY 425

Query: 632 KFDVLVGINLLR-EGLDIPECGLVAILDADKEG 663
               L    L   EG+ +P  G V + D +  G
Sbjct: 426 TPVALKYSGLAELEGVLLPTLGWVVLTDREFFG 458



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 72/193 (37%), Gaps = 13/193 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      + E  +I+       P++   +    E +   I     +G 
Sbjct: 757 VLTLTATPIPRTLYMALSGLREMSLIQTPPPSRRPIKTYLSPYNPEVIRTAIRQELDRGG 816

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++   V      E+ +  L E     R+   H ++   E    +     G+ D+LV   +
Sbjct: 817 QVFYVVNRIEGIEEASAKLREWVPGARIAIAHGQMPEGELEATMLAFNNGEIDILVCTTI 876

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + I +A + G  +    L   +GRA    ++ +    D I       +
Sbjct: 877 IESGLDIPRVNTILIENAQEFGLAQ-LYQLRGRVGRAGIQAHAWLFYREDGI-------L 928

Query: 702 DETTRRR--EKQL 712
            E  R+R    Q 
Sbjct: 929 TEEARKRLQAIQE 941



 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI-NLLREGL 646
           T+LT++    L E      I+V  ++    + E+ EI+  L+ G+ DV+VG   LL + +
Sbjct: 665 TILTQQHYHTLKERFAPYPIQVGLLNRFRTSEEKKEILSRLKSGELDVVVGTHQLLGKDV 724

Query: 647 DIPECGLVAILDADKEG 663
              + GL+ I +  + G
Sbjct: 725 QFRDLGLLVIDEEQRFG 741


>gi|90021441|ref|YP_527268.1| transcription-repair coupling protein Mfd [Saccharophagus degradans
           2-40]
 gi|89951041|gb|ABD81056.1| transcription-repair coupling factor [Saccharophagus degradans
           2-40]
          Length = 1153

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/493 (15%), Positives = 165/493 (33%), Gaps = 60/493 (12%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA----VEYFVSYYD 230
           GV+G  + F  A+         +++  +   A +   +             V  F  + +
Sbjct: 21  GVSGLARVFACAEAAAQHNGTTVIIVQSMTEADRFARDLMLLTKGKKNTPEVLQFADW-E 79

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
               + + P  D             DRMR     S  +    +VV++ + +  +      
Sbjct: 80  TLPYDNFSPHQDIIS----------DRMRCLYQLS-NQAQAIVVVAASTLMQRLAPANYI 128

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
               + ++  +++ +  LL+SL+   Y+R D     G F + G  ++IFP      A+R+
Sbjct: 129 IANSLVVEKNETINRDNLLTSLINAGYQRVDTVFNHGEFAIRGALLDIFPMGSS-AAYRI 187

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F ++++ I  F P T + +  V  I++            ++            +L   
Sbjct: 188 ELFDDEVDSIRTFDPETQRTVDQVSKIELLPGKECQLDAEGISRF----------KLNWY 237

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
           E          ++ R     + + +  S   IE Y          E   +LF+Y+ E++L
Sbjct: 238 ENFN-------VDHRECPVFQDVSSGISPAGIEYYLPLFF-----EQTASLFDYLHENTL 285

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
           + V +   T  +              +      LP       +        R   +V+  
Sbjct: 286 VMVTKGFETAVEDFWRDASSRFESHNIDMRRPLLPPAKVFHSVSEIYSQLKRFQRVVLEP 345

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
           T      E+     ++ +  P   +D       A+  +  + + I        RIL    
Sbjct: 346 TQVE---ERSGSANIKTLSTPNLNIDAK-----AQNPLYKLEEFIYSY---DGRILFCAE 394

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           +    E L E+  + ++            E +        GK  + + +   +EGL +  
Sbjct: 395 SNGRRETLKEHFKKIDL----------QPEDVASTDAFLQGKSSIAICVADFQEGLHLKT 444

Query: 651 CGLVAILDADKEG 663
             +  I ++   G
Sbjct: 445 PNICIIAESQLFG 457



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 93/264 (35%), Gaps = 26/264 (9%)

Query: 525  TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
             + ++ATP    L     GI    II   P   +     +R +   V  + + I     +
Sbjct: 758  ILTLTATPIPRTLNMAMSGIRDLSIIATPPAKRLSVKTFVRQSDNAV--IKEAILREIMR 815

Query: 582  GLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            G ++      V T  + A DL E + E  IRV   H +++  E    + D    + ++LV
Sbjct: 816  GGQLYYLHNEVSTIEKTAADLQELVPEARIRVA--HGQMRERELEAAMSDFYHKRHNILV 873

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +           K++
Sbjct: 874  CTTIIETGIDIPSANTIIIDRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPHKKAM 929

Query: 698  QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
                D   R        +        S   +I    + +  E +        +  + +  
Sbjct: 930  --TADAVKRLEAIAEAQDLGAGFTLASHDLEIRGAGELLGDEQSGQMQAIGFSLYMEMLD 987

Query: 758  KKGKAHLKSLRKQMHLAADNLNFE 781
            K  +A           +   L+FE
Sbjct: 988  KAVEAL---------KSGKELDFE 1002



 Score = 42.4 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 30/235 (12%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q   ++ + V T    ++  E+  +   +  + V  +     + + 
Sbjct: 640 GKTEVAMRAAFIAVQNSKQVAVLVPTTLLAQQHYENFKDRFADWPVNVEVISRFKSSKDI 699

Query: 622 IEIIRDLRLGKFDVLVGINLLREG-LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            EI + L  GK D+L+G + L +G L  P  GL+ I +  + G  + +        +A R
Sbjct: 700 SEIQKKLEAGKVDILIGTHKLIQGELIFPNLGLLIIDEEHRFGVRQKEAL------KALR 753

Query: 681 NVNSKVILYADTITKSIQLAIDET-----------TRRREKQLEHNKKHNINPQSVKEKI 729
                + L A  I +++ +A+               R   K       + +  +++  +I
Sbjct: 754 TEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPAKRLSVKTFVRQSDNAVIKEAILREI 813

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAA 784
           M       L +  +T     A    L     +A ++    QM      L    AA
Sbjct: 814 MRGGQLYYLHNEVSTIEKTAADLQELVP---EARIRVAHGQMRE--RELE---AA 860


>gi|269798420|ref|YP_003312320.1| transcription-repair coupling factor [Veillonella parvula DSM 2008]
 gi|269095049|gb|ACZ25040.1| transcription-repair coupling factor [Veillonella parvula DSM 2008]
          Length = 1098

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 109/281 (38%), Gaps = 29/281 (10%)

Query: 161 LKGIHS--REKVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEFKNFF 217
           + G+++  R+   ++ G++GS K+F +++   A + +P +++  +K        +   F 
Sbjct: 16  VDGLNAFQRKGKSVIYGLSGSQKSFLLSQSFSAGLTKPVVIVVHDKDHKEMWERDLAFFM 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS- 276
           P+  V  F             P TD       + + ++   +  A   L  +   +V++ 
Sbjct: 76  PNAPVLSF-------------PTTDHVDFTTVARSLEVQGAQMRALALLAWQEPAVVIAN 122

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           +      + S        +   + D++E+   L  LV   Y+R D    RG F V GD +
Sbjct: 123 AEEVTQYVVSPHYLKGQSLHFALNDAIERDVALEQLVTIGYERVDQVEQRGHFAVRGDIL 182

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP------ 390
           +I+P +  D   R+  FG++I+ +  F     + I  +E+  +       +         
Sbjct: 183 DIYPVNS-DHPIRIEFFGDEIDTLRFFSVENQRSIEQIESYTVTPFFLGKSDADSTLLSY 241

Query: 391 -TLNTAMKY----IKEELKMRLIELEKEGRLLEAQRLEQRI 426
               T +      I+E LK  L E     +        QR 
Sbjct: 242 VKEGTLIYDEPGRIQEALKKFLKEDPTHRKNHCDWNELQRT 282



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 10/159 (6%)

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVY 572
           +++EW       + +SATP    L      + E  +I        PV+       +  + 
Sbjct: 689 KWKEWASNID-VLTLSATPIPRTLHMSLVGVREMSVINTPPEERLPVQTYVVEYDMNLIA 747

Query: 573 DEINLAAQQGLRILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D I     +G ++   V  +      M E L   L      V   H ++   +  EI+ D
Sbjct: 748 DAIKRELARGGQV-YFVYNRVASINHMGELLESALPGLRYAVA--HGQMTGRQIEEIMTD 804

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
              G +DVL+  +++  GLDIP    + I DAD+ G  +
Sbjct: 805 FYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQ 843


>gi|239930800|ref|ZP_04687753.1| transcriptional-repair coupling factor [Streptomyces ghanaensis
           ATCC 14672]
 gi|291439165|ref|ZP_06578555.1| transcriptional-repair coupling factor [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342060|gb|EFE69016.1| transcriptional-repair coupling factor [Streptomyces ghanaensis
           ATCC 14672]
          Length = 1185

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 121/344 (35%), Gaps = 43/344 (12%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+A+ +       ++ + L    + + F +A +     RP + +      A  L +  +
Sbjct: 14  TALAEAISAASDGHRMHVDLVGPPAARPFAVAALARETGRPVLAVTATGREAEDLAAALR 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +  P   V  + S+ +    E   PR+DT   + +     + R+ H            +V
Sbjct: 74  SLLPPEGVVEYPSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPRLDDPETGPVSVV 128

Query: 275 VSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           V+ V  +      G+G +E        L+ G S + +E++ +L    Y R ++   RG F
Sbjct: 129 VAPVRSVLQPQVKGLGDLEPV-----SLRTGQSADLEEVVEALAAAAYARVELVEKRGEF 183

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTP 388
            V G  +++FP   E+   R+  +G+D+EEI  F     + +   E  +        +  
Sbjct: 184 AVRGGILDVFPP-TEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELLLT 242

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
                 A       L     EL                   L  +    + + +E+ +  
Sbjct: 243 EDVRARA-----RALAEEHPELGD----------------LLGRIAEGIAVEGMESLAPV 281

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L           L + +PE ++  V +      + + +      
Sbjct: 282 LVDEMEL-----LLDVLPEGAMALVCDPERVRTRAADLVATSQE 320



 Score = 38.2 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 65/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + +  PP E     T V     + +   I    
Sbjct: 785 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEEKQIGAAIRREL 840

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +     L +     R    H ++      +++ D    KFDVLV
Sbjct: 841 LREGQVFYIHNRVESIDRAAARLRDIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLV 900

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R        +     K  
Sbjct: 901 STTIVESGIDISNANTLIVERGDTFGLSQ----LHQLRGRVGRGRERGYAYFLYPPEKP- 955

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 956 ---LTETAHERLATIAQHTEMG 974


>gi|330897621|gb|EGH29040.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 338

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 126/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGATLSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E     +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304


>gi|315650057|ref|ZP_07903136.1| transcription-repair coupling factor [Eubacterium saburreum DSM
           3986]
 gi|315487686|gb|EFU77990.1| transcription-repair coupling factor [Eubacterium saburreum DSM
           3986]
          Length = 1112

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/514 (15%), Positives = 164/514 (31%), Gaps = 112/514 (21%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A    L + I   +    +  ++  GK   ++++++  +   +V+  ++  A++LY +  
Sbjct: 12  ADFESLEESIKKEKFPLHVTDMSEPGKAHLISELMKEDRPWKLVITYDEDNASRLYEDIG 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            F   + V  +             P  D         + QI   R    + L E    +V
Sbjct: 72  CFL--DDVYLY-------------PAKDLLFFNADIRSLQITAKRVEVWKHLREDKSGVV 116

Query: 275 VSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V++V  +   +   + + +  +++K  D+V+  E+   L    Y+R       G F + G
Sbjct: 117 VTTVDALMDKLEDYQKFCRATIEIKKEDTVDLDEISKRLTDIGYERSFETDNPGQFSIRG 176

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++IFP   E+   R+ ++ ++I+ +  F P + + I  +E + IY             
Sbjct: 177 GIVDIFP-LTEENPVRIELWDDEIDAMKSFDPASQRSIEELEHVSIYPAKEREIGGE--- 232

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                                                            E++ RY     
Sbjct: 233 -------------------------------------------------ESFLRYF---- 239

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
                    +Y    +L+++DE   T+ +            A   E G       ++ P 
Sbjct: 240 ---------DY--NKTLIYIDEPARTMDKAKRTGGEYNQSAAGRIESG---QYNKEDIPD 285

Query: 514 RF---EEWNCL--RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
            F   E +  L   P+  +        ELE     +     R +G+             V
Sbjct: 286 IFGAEEVFYSLNKSPSIALTGLDNRIKELEIKS--VYSIFSRMSGVYHE-----DFTNLV 338

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           ED+            ++ L   +K  A+ L +     +  +    SE  +   I      
Sbjct: 339 EDL----QKYRSDKTKVALICASKTRAKRLCDSFI-NDYSLDAFFSEEDSDVSIVP---- 389

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
                 + + +  +  G + P      I ++D  
Sbjct: 390 ----GQIAIFVGNIHSGFEYPALNFAVISESDIF 419



 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 18/193 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE-----INLA 578
             + ++ATP    L      I +  +    L +PPV+ +  +T V + +DE     I   
Sbjct: 716 NVLTLTATPIPRTLHMSLSGIRDLSV----LEEPPVDRKPIQTYVMEYHDETVKEAIRRE 771

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +G ++          E++  ++     +I V Y+H  +   +    + D   G  DVL
Sbjct: 772 VARGGQVYYLYNRINNIEEVAAHVRTLLPDINVEYVHGRMDERQLEARMVDFINGDVDVL 831

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  GLD+P    + + DAD+ G L     L   +GR+ R+       YA  +   
Sbjct: 832 VTTTIVETGLDVPNANTIIVHDADRLG-LSQLYQLRGRVGRSKRSA------YAFLMYTG 884

Query: 697 IQLAIDETTRRRE 709
            +L  +E ++R +
Sbjct: 885 NKLLSEEASKRLK 897


>gi|289648570|ref|ZP_06479913.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 1150

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 126/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV-VSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E    ++ V   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLAVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V           + + +     +G 
Sbjct: 754 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKPTIKEALLRELLRGG 813

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +  E    DL E + E  I +   H +++  E  +++ D    +F+VL+  
Sbjct: 814 QVYYLHNDVKTIEKCAADLAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLIAS 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +              + 
Sbjct: 872 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RK 923

Query: 700 AIDETTRRREKQLEHNKKHN 719
            I     +R + + + +   
Sbjct: 924 QITPDAEKRLEAIANTQDLG 943


>gi|212212451|ref|YP_002303387.1| transcription-repair coupling factor [Coxiella burnetii CbuG_Q212]
 gi|212010861|gb|ACJ18242.1| transcription-repair coupling factor [Coxiella burnetii CbuG_Q212]
          Length = 1157

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 82/470 (17%), Positives = 161/470 (34%), Gaps = 74/470 (15%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQL 209
           S  QP     +   +           + G   +  ++ + E  Q P +++ P+   A  L
Sbjct: 10  SPLQPPIPRSIDNRLQWGN-------LKGDSVSLAISTLAEKNQGPLLLITPDVHSANYL 62

Query: 210 YSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER 269
           +              F S  D   P  + P  +T      S +E I   R      L   
Sbjct: 63  HRSL----------PFFSSADT--PILHFPDWETLPYDYFSPHEDIISERLLTLYRLPRS 110

Query: 270 NDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           +  I++S++   +  +   +   +    L + +    +E    L+   Y+     +  G 
Sbjct: 111 SSGIIISALPTLLQRLPPADHLEKNTFILSVDEKFSLQENRERLISAGYRSVQQVMEHGE 170

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           +   G  I+I+P     + +R+ +F +++  I  F P + + +  +E++++     Y   
Sbjct: 171 YAQRGSIIDIYPM-GSPLPYRIELFDDEVTSIRSFDPESQRSVEKIESVRLLPAREYPLT 229

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
           +     A+ + ++    R   L         Q++               +   IE Y   
Sbjct: 230 KE----AITHFRQSW--RAKFLGNPQEAPIYQQI-----------SEGEAAAGIEYYLPL 272

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
                  E   T F Y+P+++ + + E   T+      ++   HR   L           
Sbjct: 273 FF-----ETTQTFFSYLPKNTTVILFEKLETVA--HQFWQEVEHRYEQLRH--------D 317

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ--IIRPTGLVDPPVEIRSAR- 565
             RPL         P+ + +S      E++    I +    II  TG V+   E      
Sbjct: 318 LTRPLCP-------PSELFLSFEQLRIEIKNHTQIKISDAPIIEKTGQVNFATENFPPLL 370

Query: 566 ---------TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                     ++++   EI   A QG R+L    T    E L E+L E +
Sbjct: 371 IDHKASQPFARLKNFLHEI--TAIQGGRVLFCAETDGRRETLLEFLKEID 418



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H +++  +   ++ D    K+++LV   ++  G+DIP    + I  AD+ G  +    L 
Sbjct: 856 HGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDIPTANTIIINRADRFGLAQ----LH 911

Query: 673 QTIGRAARNVNSKVILYADTITKSI 697
           Q  GR  R+ +           +++
Sbjct: 912 QLRGRVGRSHHQAYAYLLIPDQEAL 936



 Score = 41.6 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 4/103 (3%)

Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQ-LLKGIHSREKVQLLLGVTGSGKT 182
                ++ +   K  + F+    +  + DQ AAI   ++     R   +L+ G  G GKT
Sbjct: 590 QAATGFTFSIPEKGYSLFRQAFPFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKT 649

Query: 183 ---FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
                 A +     +   V+ P  +LA Q +  F++ F    V
Sbjct: 650 EVAMQAAFIAVQNNKQVAVLVPTTLLAEQHFYNFQDRFADWPV 692



 Score = 38.2 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q   ++ + V T  +AE       +   +  +R+  +       +R
Sbjct: 647 GKTEVAMQAAFIAVQNNKQVAVLVPTTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQR 706

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEG 663
            +I ++L  GK D+++G + LL + +   + GL+ + +  + G
Sbjct: 707 QQITQELAEGKIDIIIGTHKLLSKDIRFKDLGLLIVDEEHRFG 749


>gi|163751452|ref|ZP_02158676.1| transcription-repair coupling factor [Shewanella benthica KT99]
 gi|161328666|gb|EDP99815.1| transcription-repair coupling factor [Shewanella benthica KT99]
          Length = 1161

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 59/310 (19%), Positives = 122/310 (39%), Gaps = 34/310 (10%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           + +  K Q L  + G+ +  T+A +++      + +  +   A  L SE          +
Sbjct: 12  VKNASKAQTLYTLGGASQAITLANLVQNHVGITVAVTHDTPTALLLESEL---------D 62

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY- 282
           Y +   D+  P    P  +T      S ++ +   R      L      +V+  +S +  
Sbjct: 63  YLLKGTDF--PVWLFPDRETLPYDSFSPHQDLVSQRLETLSRLPNAKQGLVIVPLSTLMV 120

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +      +  ++ LK GD+   +++   LV   Y   +     G F V G  I++FP  
Sbjct: 121 RLPPKSFLAGNVLMLKKGDNYCLQDVKQQLVNTGYHLVEQVYEHGEFAVRGSIIDLFPMG 180

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E   +R+ +F +++E I  F P + +    ++ I++     +    PT + A++  ++ 
Sbjct: 181 SE-QPFRIELFDDEVESIRHFDPESQRSSGQIDAIRLLPAKEF----PTDDQAIEGFRQR 235

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            + R   L K     E + + Q ++              IE+Y          +   +LF
Sbjct: 236 YRRRFERLVK-----EPESVYQMVSR-------KIFPAGIESYLPLFF-----DETASLF 278

Query: 463 EYIPEDSLLF 472
           +Y+PE + L 
Sbjct: 279 DYLPEHAQLV 288



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 68/189 (35%), Gaps = 15/189 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+          + + +     +G 
Sbjct: 763 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFIREYDTTTIREALLREILRGG 822

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E    ++ E L E  +     H +++  +   ++ D    KF+VLV  
Sbjct: 823 QVYFLHNKVETIEKRANEIRELLPEARVVTA--HGQMRERDLERVMSDFYHQKFNVLVCT 880

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           KS   
Sbjct: 881 TIIETGIDVPSANTIVIERADKFGLAQ----LHQLRGRVGRSHHQAYAYMMTPHPKS--- 933

Query: 700 AIDETTRRR 708
            I    R+R
Sbjct: 934 -ISSDARKR 941


>gi|326333885|ref|ZP_08200118.1| transcription-repair coupling factor [Nocardioidaceae bacterium
           Broad-1]
 gi|325948467|gb|EGD40574.1| transcription-repair coupling factor [Nocardioidaceae bacterium
           Broad-1]
          Length = 1198

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 94/578 (16%), Positives = 184/578 (31%), Gaps = 74/578 (12%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           AA+++++        + L +    + + F +  ++   +R  + +      A  L S+  
Sbjct: 22  AALSEVMAEAKGGRMLALDVTGPEALRPFVVTGLVRQ-ERTVLAVTATSREAEDLVSDLT 80

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +  P ++V Y+ S+ +    E   PR+DT   + + +        H            +V
Sbjct: 81  DLLPPDSVAYYPSW-ETLPHERLSPRSDTVGRRLAVLRRLR----HPDADGAHGPLKVVV 135

Query: 275 VSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
               S +     G+G +E       +L  G  V   +++  L    Y R D+   RG F 
Sbjct: 136 APVRSVLQPQVKGLGDLEPV-----ELVKGQEVSLDDVVVKLADAAYSRVDLVEKRGEFA 190

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-----RNVETIKIYANSHY 385
           V G  +++FP   E+   RV  +G++++ I  F     + I        E +        
Sbjct: 191 VRGGIVDVFPP-TEEHPVRVEFWGDEVDSIRHFAVADQRAIPEEHGGATERLWAPPCREL 249

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
           +        A K  ++                    L +      + +    + + +E+ 
Sbjct: 250 LLTPEVRARARKLGED-----------------HPTLIELT----DKIAAGIAVEGMESL 288

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYGF 502
           +  L           L + IPEDS + + +          +              A  G 
Sbjct: 289 APALVDDMEL-----LIDLIPEDSHVLLLDPERIRSRAHDLVATAEEFLGASWAAAASGG 343

Query: 503 RLP---SCMDNRPLRFEEWNCLRPTTIVVSATP---GSWELEQCQGIIVEQIIRPTGLVD 556
             P   S    R L     + +       S +P      E +     +V   +R      
Sbjct: 344 VAPIDLSAASYRDLADVRAHAIAQGKPWWSVSPFGLDDGESDLADPDVVGVPVRKIDWQP 403

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
                   R        +I      G R+++       A+   E L ER++  R    + 
Sbjct: 404 AKA----YRGDTAAAMADIERWRDDGCRVVVVQPAHGTAQRTVEALGERDVPARLAEGDE 459

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           +T + +            V V    L  G       LV +   D  G   S   +++   
Sbjct: 460 ETAKPVHKT---------VTVIHARLTHGFFDEANQLVVLTGEDISGQKSSTRDMVKMPA 510

Query: 677 RAARNVNS---KVILYADTITKSIQLAIDETTRRREKQ 711
           R  + ++    K   Y       +   I+   ++RE Q
Sbjct: 511 RRKKQIDPLELKPGDYVVHEQHGVGQFIE--MKQREVQ 546



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 68/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL- 583
            + +SATP    LE     I E     + +  PP E     T V    D   +AA +   
Sbjct: 799 FLSMSATPIPRTLEMSITGIREM----STITTPPEERHPVLTYVGAYEDRQIVAAVRREL 854

Query: 584 ----RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
               ++          E     + E     R    H ++   +  +++ D    +FDVLV
Sbjct: 855 LREGQVFYIHNRVNSIEKAAARIRELVPEARVAVAHGQMNEKQLEQVMVDFWEKEFDVLV 914

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              L+  GLD+     + I  AD  G  +    L Q  GR  R+       +     K  
Sbjct: 915 CTTLVESGLDVSNANTMIIERADTLGLSQ----LHQLRGRVGRSRERAYAYFLYPGEKP- 969

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   L  +    
Sbjct: 970 ---LTETAHERLATLAQHSDLG 988


>gi|71736642|ref|YP_274082.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557195|gb|AAZ36406.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 1150

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 127/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGATLSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E  +  +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V           + + +     +G 
Sbjct: 754 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKPTIKEALLRELLRGG 813

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +  E    DL E + E  I +   H +++  E  +++ D    +F+VL+  
Sbjct: 814 QVYYLHNDVKTIEKCAADLAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLIAS 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +              + 
Sbjct: 872 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RK 923

Query: 700 AIDETTRRREKQLEHNKKHN 719
            I     +R + + + +   
Sbjct: 924 QITPDAEKRLEAIANTQDLG 943


>gi|66045137|ref|YP_234978.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255844|gb|AAY36940.1| Transcription-repair coupling factor [Pseudomonas syringae pv.
           syringae B728a]
          Length = 1150

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 127/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGATLSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E  +  +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V           + + +     +G 
Sbjct: 754 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKPTIKEALLRELLRGG 813

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +  E    DL E + E  I +   H +++  E  +++ D    +F+VL+  
Sbjct: 814 QVYYLHNDVKTIEKCAADLAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLIAS 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +              + 
Sbjct: 872 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RK 923

Query: 700 AIDETTRRREKQLEHNKKHN 719
            I     +R + + + +   
Sbjct: 924 QITHDAEKRLEAIANTQDLG 943


>gi|320324788|gb|EFW80860.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329153|gb|EFW85150.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 1150

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 127/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGATLSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E  +  +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V           + + +     +G 
Sbjct: 754 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKPTIKEALLRELLRGG 813

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +  E    DL E + E  I +   H +++  E  +++ D    +F+VL+  
Sbjct: 814 QVYYLHNDVKTIEKCAADLAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLIAS 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +              + 
Sbjct: 872 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RK 923

Query: 700 AIDETTRRREKQLEHNKKHN 719
            I     +R + + + +   
Sbjct: 924 QITPDAEKRLEAIANTQDLG 943


>gi|330973230|gb|EGH73296.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 1150

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 127/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGATLSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E  +  +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V           + + +     +G 
Sbjct: 754 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKPTIKEALLRELLRGG 813

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +  E    DL E + E  I +   H +++  E  +++ D    +F+VL+  
Sbjct: 814 QVYYLHNDVKTIEKCAADLAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLIAS 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +              + 
Sbjct: 872 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RK 923

Query: 700 AIDETTRRREKQLEHNKKHN 719
            I     +R + + + +   
Sbjct: 924 QITHDAEKRLEAIANTQDLG 943


>gi|302184811|ref|ZP_07261484.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           syringae 642]
          Length = 1150

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 126/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGATLSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E     +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V           + + +     +G 
Sbjct: 754 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKPTIKEALLRELLRGG 813

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +  E    DL E + E  I +   H +++  E  +++ D    +F+VL+  
Sbjct: 814 QVYYLHNDVKTIEKCAADLAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLIAS 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +              + 
Sbjct: 872 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RK 923

Query: 700 AIDETTRRREKQLEHNKKHN 719
            I     +R + + + +   
Sbjct: 924 QITHDAEKRLEAIANTQDLG 943


>gi|78184749|ref|YP_377184.1| transcription-repair coupling factor [Synechococcus sp. CC9902]
 gi|78169043|gb|ABB26140.1| Transcription-repair coupling factor [Synechococcus sp. CC9902]
          Length = 1192

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 63/345 (18%), Positives = 132/345 (38%), Gaps = 41/345 (11%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +LL+     E++ L+ G   + +    + + +    P +V+ P    A +  +  +    
Sbjct: 18  ELLERSRRSERL-LMRGAGRNCRALIASAMAQRDGSPLLVVVPTLEEAGRWTALLELMGW 76

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
             A  Y  S    Y+P  + P ++    +   +++ ++           E +   +V++ 
Sbjct: 77  SLASLYPTSEGSPYEP--FDPTSEIIWGQLQVLSDLLN---------DPESSGRAIVATE 125

Query: 279 SCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            C+   +   ++       L  GD VE + L  +L K  Y+R       GT+   GD ++
Sbjct: 126 RCLQPHLPPPDALKATCRVLTRGDEVELESLAETLAKLGYERVSTIDQEGTWSRRGDIVD 185

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IF    E +  R+  FG ++ ++ EF P T + +  ++ +++                  
Sbjct: 186 IFSVSSE-LPVRLEFFGEELVKLREFDPSTQRSLDPIDQLRLTPTGFNPL---------- 234

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            I ++L+  +   +    LL  Q          + L   G+ + +    R L G    E 
Sbjct: 235 -IADQLRATMP--DGLSSLLGEQ--------ATDELLEGGTPEGM----RRLMGLAWNE- 278

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD-FHRKATLAEYG 501
           P +L +Y+P+ + + +DE    +            H K    E G
Sbjct: 279 PASLLDYLPDVTTVVIDERRQGLAHGQLWLDHAIEHHKEMAIEVG 323



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 69/195 (35%), Gaps = 17/195 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E V   I    
Sbjct: 772 VLTLSATPIPRTLYMSLSGVREMSLITT----PPPLRRPIKTHLASLDPEAVRSAIRQEL 827

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      ED+   L      +++   H ++   E    +     G+ DV++
Sbjct: 828 DRGGQVFYVVPRVEGIEDVANGLRTMLPGLKLLVAHGQMAEGELESAMVAFNAGEADVML 887

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA + G  +    L   +GR+    ++ +    +      
Sbjct: 888 CTTIVESGLDIPRVNTILIEDAHRFGLAQ-LYQLRGRVGRSGIQAHAWLFYPGNASLSDN 946

Query: 698 QLAIDETTRRREKQL 712
                   R R  Q 
Sbjct: 947 AR-----QRLRAIQE 956


>gi|172038623|ref|YP_001805124.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51142]
 gi|171700077|gb|ACB53058.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51142]
          Length = 1159

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 95/636 (14%), Positives = 200/636 (31%), Gaps = 88/636 (13%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +LL  +        L G+    K    + + +A Q+  +V+      A +  ++ +   
Sbjct: 17  KELLDKLK-GNNELGLKGINRLPKGLISSALAQANQQNLLVICATLEEAGRWTAQLEIMG 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
                 Y  +    Y+P  + P ++    +   ++            S    N+  +V++
Sbjct: 76  WKTVNFYPTTEASPYEP--FNPESEMIWGQMQVLSNL--------NISENNNNNYAIVTT 125

Query: 278 VSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
              +   +   + +    ++L+ G + + K+    LVK  Y+R ++  + G +   GD +
Sbjct: 126 EKALQPHLPPPDIFHTHCLKLQAGMTEKSKKFDEGLVKLGYERVNLVEVEGQWSRRGDIV 185

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IFP   E V  R+  FG+++E+I EF P T + + ++E I +   S       T+    
Sbjct: 186 DIFPVSSE-VPIRLEWFGDELEKIREFDPATQRSLDSIENILLTPISFNTIIANTIKENN 244

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
             + + L                         + E L+       ++ +          +
Sbjct: 245 NNLDDYLSE----------------------EETEDLKNYNYPPGMQRFLGL-----AFD 277

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP----SCMDNRP 512
            P  + +Y+  ++L   DE                       +    LP    S  D+  
Sbjct: 278 EPACILDYLSPNTLCVFDEIEQCESHSDRWLDYIEENWQ---DQEKNLPKIHRSFNDSFQ 334

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           L  E           V+ T       +       Q  +   ++    EI S    ++   
Sbjct: 335 LTQELPKLYLSELSEVNNTNALDLSSRPLPTTPHQFAKLAEILRGKREIYS-GITLDKYA 393

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             +     Q  R +               L E +   +++ +        +       G 
Sbjct: 394 TWLIS--AQPSRTV-------------SLLQEHDCPAQFIPNPRDYPAINKSHIQ---GT 435

Query: 633 FDVLVGINLLR-EGLDIPECGLVAILDADKEGF-LRSKTSLIQTIGRAAR--------NV 682
              L    L   EG  +P   +V + D +  G  + +    I+   RA          + 
Sbjct: 436 AIALKYSGLAELEGFILPTFRIVVVTDKEFFGQHVLATAGYIRKRRRATSKKVDLQQLHP 495

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
              V+  +  I K ++L    T      Q             +     +  D +      
Sbjct: 496 GDYVVHKSHGIGKFLKLESLATREYLVVQYA---------DGILRIPADSFDSLSRYRHT 546

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
               S   Q   ++ K  +   + +RK +   A +L
Sbjct: 547 G---STPPQLHKMTGKTWQKSKQKVRKNIKKLAVDL 579



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 69/187 (36%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      I E  +I        P++   +R   + V   I     +G 
Sbjct: 763 VLTLTATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSRYNPDVVRTAIRNELDRGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++   V      E++   +       R    H ++   E    +     G  D+LV   +
Sbjct: 823 QVFYVVPRVEGIEEVAAQIKTMVPSARMAIAHGQMDVNELEITMLSFNNGDADILVCTTI 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + + DA K G  +    L   +GR+    ++ ++          +  +
Sbjct: 883 VESGLDIPRVNTIIVEDAQKFGLAQ-LYQLRGRVGRSGIQAHAWLLY-------PSKAQL 934

Query: 702 DETTRRR 708
            ET R+R
Sbjct: 935 TETARQR 941



 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 19/151 (12%)

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEI---RSAR---------TQVEDVYDEINLA 578
           TP   ELE           +   + D  +++   R             + E     I  A
Sbjct: 598 TPWQQELEDS-FPYQPTPDQLKAIQDVKIDLESDRPMDRLVCGDVGFGKTEVAVRAIFKA 656

Query: 579 AQQGLRILLT-----VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
              G + +       +LT++    L E      I +  ++    T E+ EII+ L  G+ 
Sbjct: 657 VTSGHKQVAFLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTTSEKKEIIQRLATGEL 716

Query: 634 DVLVGI-NLLREGLDIPECGLVAILDADKEG 663
           D++VG   LL + +   + GL+ + +  + G
Sbjct: 717 DIVVGTQQLLGKSVKFKDLGLLVVDEEQRFG 747



 Score = 38.5 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 146 DYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVIEAM----QRPAIVMA 200
            Y P+ DQ  AI  +   +   R   +L+ G  G GKT    + I        +    +A
Sbjct: 609 PYQPTPDQLKAIQDVKIDLESDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGHKQVAFLA 668

Query: 201 PNKILAAQLYSEFKNFFPH 219
           P  IL  Q Y   K  F  
Sbjct: 669 PTTILTQQHYHTLKERFAP 687


>gi|302542946|ref|ZP_07295288.1| transcription-repair coupling factor [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460564|gb|EFL23657.1| transcription-repair coupling factor [Streptomyces himastatinicus
           ATCC 53653]
          Length = 1177

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 58/288 (20%), Positives = 115/288 (39%), Gaps = 20/288 (6%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+A+ ++G     +  + L    + + F +A +  +  RP + +      A  L +  +
Sbjct: 14  PALAEAVRGAADGNRPHVDLVGPPAARPFAVAALARSAGRPVLAVTATGREAEDLAAALR 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +  P + V  + S+ +    E   PR+DT   + +     + R+ H +          +V
Sbjct: 74  SLLPPDGVVEYPSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPSPDDPAAGPVSVV 128

Query: 275 VSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           V+ V  +      G+G +E        L+ G S +  E++  L    Y R ++   RG F
Sbjct: 129 VAPVRSVLQPQVKGLGELEPV-----SLRAGRSADLPEVVDGLAAAAYSRVELVEKRGEF 183

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET--IKIYANSHYVT 387
            V G  +++FP   E+   RV  +G+D+EEI        + +   E     +      + 
Sbjct: 184 AVRGGILDVFPP-TEEHPLRVEFWGDDVEEIRYSKVADQRSMEVAERRARTVGPKDQLLL 242

Query: 388 PRPTLNTAMKYIKE--ELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
                  A    +E  EL   L ++ +   +   + L   +  D+E+L
Sbjct: 243 TEDVRERAAALAEEHPELGELLGKIAEGIAVEGMESLAPVLVDDMELL 290



 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 65/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + +  PP E     T V     + +   I    
Sbjct: 778 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEQKQIGAAIRREL 833

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 834 LREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSETALEQVVVDFWEKKFDVLV 893

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R        +     K  
Sbjct: 894 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRERGYAYFLYPPEKP- 948

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 949 ---LTETAHERLATIAQHTEMG 967


>gi|325912458|ref|ZP_08174853.1| transcription-repair coupling factor [Lactobacillus iners UPII
           143-D]
 gi|325475800|gb|EGC78971.1| transcription-repair coupling factor [Lactobacillus iners UPII
           143-D]
          Length = 1110

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 103/233 (44%), Gaps = 17/233 (7%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A+L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADAKLINFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F             P  +T   + +  +      R  A   LL +   
Sbjct: 68  LVELFEENMVHFFPVE----------PLLET---QAAVSSLDELSQRLDAMSFLLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  Y+R D+    G F +
Sbjct: 115 IVISTPQSLQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYQRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            GD ++I+P ++    +R+  F ++I+ I  F P++ +   ++  + I     
Sbjct: 175 RGDILDIYPLNIA-YPYRIEFFDDEIDNIRTFNPVSQRTKDSLTEVVIEPADD 226



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V +       +  
Sbjct: 712 VLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPIQTYVTEETPNIVREACLRELARNG 771

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I       +  +    YL +     R  Y+H  +   +  +I+      KFD+LV   +
Sbjct: 772 QIFFLHNKIQDIDQKVAYLSQLIPEARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTI 831

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+D+P    + + +AD  G L     L   IGR++R   +  +   D +
Sbjct: 832 IETGVDLPNVNTLLVENADTYG-LSQLYQLRGRIGRSSRLAYAYFLYKRDKV 882


>gi|260906157|ref|ZP_05914479.1| transcription-repair coupling factor [Brevibacterium linens BL2]
          Length = 1197

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 92/523 (17%), Positives = 169/523 (32%), Gaps = 62/523 (11%)

Query: 153 QPAAIAQLLKGIHS----REKVQLLLGVTGS--GKTFTMAKVIEAMQRPAIVMAPNKILA 206
           Q   I  L+   +        +  + G+  S   +T   A        P +++      A
Sbjct: 11  QNPTITDLVSAFNDPETTGGTIDAIRGLWPSILRRTLVSADSGSTTSAPQLIVTATTREA 70

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266
             L     ++   +++  F S+ +    E   PR+DT  ++   ++    R+ H +    
Sbjct: 71  EDLARSLADWVAEDSIAIFPSW-ETLPHEKLSPRSDTVGQRLQILH----RLAHPSPDRH 125

Query: 267 LERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           L      V + +  +  G+G +E       +L +GD  E  +L   L +  Y R D+   
Sbjct: 126 LAFIIAPVRAFLQPLVKGLGDIEPV-----ELGVGDEYEIDQLSQRLTELAYSRVDMVSR 180

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           RG F V G  ++IFP   ++ A R+  FG++I+EI EF     + I              
Sbjct: 181 RGEFAVRGGIVDIFPP-TDEHALRIEFFGDEIDEIREFSVSDQRSI---PAEADAQPLTL 236

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
             P          I+E                 A  L Q +    +ML+      ++E  
Sbjct: 237 SAPPCRELLLTDSIRE----------------RAAALSQTLPAASDMLDKIAGGVAVEGM 280

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYGF 502
                    G  P  +   +PE + + + E    H     +            + A  G 
Sbjct: 281 ESLSAVLADGMEP--IIALLPEATKIIITEPERVHARAADLVVTTNEFLEAAWSGAAAGG 338

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
             P  +D     F     +     ++      WEL        E+++ PT  + P     
Sbjct: 339 ESP--IDLSAATFRTMEEMEEGARLIGL--AWWELG--GFSTDEELVSPTENLFPVPARA 392

Query: 563 S--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
                  VE +  ++        RIL+    +   + + E   E  +   ++        
Sbjct: 393 PRGYAGDVEAILTDVKGLIHDKWRILVLTEGQGPGQRMVEVFSEAGVPATFVDDPADLP- 451

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                      +  V V       G    +  L  + +AD  G
Sbjct: 452 -----------EALVTVTTAAPFGGFVFDDLKLAVLTEADVLG 483



 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 11/149 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     T    PP E     T V     + +   I    
Sbjct: 792 VLAMSATPIPRTLEMAVTGIREMSTLAT----PPEERHPVLTYVGKKEDKQIKAAIRREL 847

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++       +  E +  ++ E     R    H ++      ++I D    KFDVLV
Sbjct: 848 MREGQVFYIHNRVKDIESVAGHIAELVPEARIAIAHGKMNEQRLEQVIVDFWEKKFDVLV 907

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLR 666
              ++  G+DI     + I  AD+ G  +
Sbjct: 908 CTTIVETGIDISNANTLIIDHADRFGLSQ 936


>gi|304310931|ref|YP_003810529.1| Transcription repair coupling factor [gamma proteobacterium HdN1]
 gi|301796664|emb|CBL44876.1| Transcription repair coupling factor [gamma proteobacterium HdN1]
          Length = 1162

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 80/487 (16%), Positives = 168/487 (34%), Gaps = 62/487 (12%)

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA---VEYFVSYYDYYQPEAYV 238
           +  M +  +A +   +V+AP+   A Q  +E    F ++A   V  F             
Sbjct: 29  SLAMIEAAKAHEGLTVVIAPSSQAALQ--AELDAVFFNDAGLEVLLF------------- 73

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
           P  +T      S +E I   R +    L +     +++   + ++ +      +   + L
Sbjct: 74  PDWETLPYDVFSPHEAIISQRLATLARLPQLHKGVLIIPLTTLLHRLPPTNYLAAHSLHL 133

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
            IG + + + +   L +  Y+  +     G F V G   +IFP     + +R+ +F ++I
Sbjct: 134 DIGQTFQIEAMRQRLQETGYRCVNTVEEHGDFAVRGAIFDIFPM-GSPLPYRIELFDDEI 192

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           + +  F P T + +  V+++++     +          +++ +E+ K +           
Sbjct: 193 DTLRTFDPETQRSLDKVDSVRLLPAREFPLDA----AGIRHFREQFKEQFDA-------- 240

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESH 477
                + R     + +    +   IE Y      +       TLF+Y+PE++L+   E  
Sbjct: 241 -----DTRHCALFQDVSGGIASAGIEYYLPLFFSQM-----ATLFDYLPENTLVIHRE-- 288

Query: 478 VTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR-PLRFEEWNCLRPTTIVVSATPGSWE 536
            T+   +  +  +   +     +  R P    N+  L  EE N        ++   G  E
Sbjct: 289 -TLNANANTFLAEASHRYDELGHDLRRPILPPNKIFLPLEELNQRLGDFRRLTLHSGPEE 347

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
            +  +  +      P            A+  +  +   +        ++L  V T    E
Sbjct: 348 DKPGRTNL------PCHTPPDLAIHSKAQQPLSKLEAHLLQCKADKRQVLFCVETAGRKE 401

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            L E L    I              +E   D         + I  L EG+++    +  I
Sbjct: 402 TLLELLQRIRI----------QPRSVETWDDFLTQSDATSITIAPLSEGMELDSPLISII 451

Query: 657 LDADKEG 663
            +    G
Sbjct: 452 TEPQLFG 458



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 78/203 (38%), Gaps = 15/203 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L      I +  I    P   +     +R AR  +  + + I     +
Sbjct: 759 MLTLTATPIPRTLNMALSSIRDLSIIATPPAKRLSIKTFVREARDSL--IKEAILRELLR 816

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E   +++       R    H +++  E   ++ D    +F+VLV  
Sbjct: 817 GGQVYYLHNEVSTIEKTAQHIESLVPEARVAIAHGQMRERELERVMTDFYHKRFNVLVCT 876

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +     YA  +T + + 
Sbjct: 877 TIIETGIDVPSANTIVMDRADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPNAKA 929

Query: 700 AIDETTRRRE-KQLEHNKKHNIN 721
             D+  +R E   L H+      
Sbjct: 930 LSDDAHKRLEAITLAHDLGAGFT 952



 Score = 37.8 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 147 YHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPN 202
           +  + DQ +AI  ++  + S R   +L+ G  G GKT      A +     +   ++ P 
Sbjct: 607 FEETPDQESAIQAVMADMTSPRPMDRLVCGDVGFGKTEVAMRAAFIAVQSGKQVAILVPT 666

Query: 203 KILAAQLYSEFKNFFPHNAV 222
            +LA Q Y   K+ F +  V
Sbjct: 667 TLLAQQHYETLKDRFSNTPV 686


>gi|161831377|ref|YP_001597022.1| transcription-repair coupling factor [Coxiella burnetii RSA 331]
 gi|161763244|gb|ABX78886.1| transcription-repair coupling factor [Coxiella burnetii RSA 331]
          Length = 1157

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 83/470 (17%), Positives = 162/470 (34%), Gaps = 74/470 (15%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQL 209
           S  QP     +   +           + G   +  ++ + E  Q P +++ P+   A  L
Sbjct: 10  SPLQPPIPRSIDNRLQWGN-------LKGDSVSLAISTLAEKNQGPLLLITPDVHSANYL 62

Query: 210 YSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER 269
           +              F S  D   P  + P  +T      S +E I   R      L   
Sbjct: 63  HRSL----------PFFSSADT--PILHFPDWETLPYDYFSPHEDIISERLLTLYRLPRL 110

Query: 270 NDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           +  I++S++   +  +   +   +    L +G+    +E    L+   Y+     +  G 
Sbjct: 111 SSGIIISALPTLLQRLPPADHLEKNTFILSVGEKFSLQENRERLISAGYRSVQQVMEHGE 170

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           +   G  I+I+P     + +R+ +F +++  I  F P + + +  +E++++     Y   
Sbjct: 171 YAQRGSIIDIYPM-GSPLPYRIELFDDEVTSIRSFDPESQRSVEKIESVRLLPAREYPLT 229

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
           +     A+ + ++    R   L         Q++               +   IE Y   
Sbjct: 230 KE----AITHFRQSW--RAKFLGNPQEAPIYQQI-----------SEGEAAAGIEYYLPL 272

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
                  E   T F Y+P+++ + + E   T+      ++   HR   L           
Sbjct: 273 FF-----ETTQTFFSYLPKNTTVILFEKLETVA--HQFWQEVEHRYEQLRH--------D 317

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ--IIRPTGLVDPPVEIRSAR- 565
             RPL         P+ + +S      E++    I +    II  TG V+   E      
Sbjct: 318 LTRPLCP-------PSELFLSFEQLRIEIKNHTQIKISDAPIIEKTGQVNFATENFPPLL 370

Query: 566 ---------TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                     ++++   EI   A QG R+L    T    E L E+L E +
Sbjct: 371 IDHKASQPFARLKNFLHEI--TAIQGGRVLFCAETDGRRETLLEFLKEID 418



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H +++  +   ++ D    K+++LV   ++  G+DIP    + I  AD+ G  +    L 
Sbjct: 856 HGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDIPTANTIIINRADRFGLAQ----LH 911

Query: 673 QTIGRAARNVNSKVILYADTITKSI 697
           Q  GR  R+ +           +++
Sbjct: 912 QLRGRVGRSHHQAYAYLLIPDQEAL 936



 Score = 41.2 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 4/103 (3%)

Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQ-LLKGIHSREKVQLLLGVTGSGKT 182
                ++ +   K+ + F+    +  + DQ AAI   ++     R   +L+ G  G GKT
Sbjct: 590 QAATGFTFSIPEKEYSLFRQAFPFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKT 649

Query: 183 ---FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
                 A +     +   V+ P  +LA Q +  F++ F    V
Sbjct: 650 EVAMQAAFIAVQNNKQVAVLVPTTLLAEQHFYNFQDRFADWPV 692



 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q   ++ + V T  +AE       +   +  +R+  +       +R
Sbjct: 647 GKTEVAMQAAFIAVQNNKQVAVLVPTTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQR 706

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEG 663
            +I ++L  GK D+++G + LL + +   + GL+ + +  + G
Sbjct: 707 QQITQELAEGKIDIIIGTHKLLSKDIRFKDLGLLIVDEEHRFG 749


>gi|319426232|gb|ADV54306.1| transcription-repair coupling factor [Shewanella putrefaciens 200]
          Length = 1162

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 162/445 (36%), Gaps = 52/445 (11%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP--HNA 221
           + +  ++Q L  + G  +  T+A ++       +++  +   A  L  E           
Sbjct: 12  VKNGTQMQTLSALGGVCQAVTLASLVRQHPGTTLLVTSDTPSALSLELELTYLLGKCDIK 71

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-C 280
           V  F             P  +T      S ++ +   R      + +    +V+  V+  
Sbjct: 72  VRLF-------------PDRETLPYDSFSPHQDLISQRLETLSQISQTEHSVVIVPVTTL 118

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           +  +      S  +  LK GD  +   +   L    Y   +     G F + G  ++IFP
Sbjct: 119 MMRLPPKAYLSANVFVLKKGDRYQLHNVRQHLTDTGYHLVEQVYEHGEFAIRGSILDIFP 178

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
           + + ++  R+ +F +++E I  F P T + +  VE+I++     +    PT + A++  +
Sbjct: 179 TGV-NMPLRIELFDDEVETIRHFDPETQRSLHPVESIRLLPAKEF----PTDSAAIEGFR 233

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
           +  + R   + K     E + + Q ++ +L           IENY          +   T
Sbjct: 234 QRYRRRFEVIVK-----EPESVYQLVSRNL-------MPAGIENYLPLFF-----DEVAT 276

Query: 461 LFEYIPEDSLLFV--DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           LFEY+P+++ L    D        +  +      R+         L +  +   L  E +
Sbjct: 277 LFEYLPKETQLVTLGDIEKSARAHLQEVETRYQDRRVDPLR---PLLAPKELYLLIEELF 333

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
              +P       +P +  +E  +      +I    L D      SA  +++     +   
Sbjct: 334 AAFKPLPRYQFISPTTESVETGKAT----VIDANQLPDI-----SANHKLKQPLLALQDY 384

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLY 603
           AQ   R+L +  ++   E L E L 
Sbjct: 385 AQNAPRMLFSAESEGRREALLELLS 409



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 85/262 (32%), Gaps = 34/262 (12%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+     + +  V + I     +G 
Sbjct: 763 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESDLATVREAILREILRGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + + +     R +  H +++  +   ++ D    +F+VLV   +
Sbjct: 823 QVYYLHNNVESIEKCAQGIIDLVPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTI 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +    
Sbjct: 883 IETGIDVPSANTIIIERADTFGLAQ----LHQLRGRVGRSHHQAYAYLMTPHPKRM---- 934

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761
             T+  R++                   ++ ++ +       T          L   +  
Sbjct: 935 --TSDARKRLEA----------------IDALEDLGAGFMLATQDLEIRGAGELLGDEQS 976

Query: 762 AHLKS----LRKQMHLAA-DNL 778
            H+      L  +M  AA   L
Sbjct: 977 GHISKIGFSLYMEMLEAAVKAL 998



 Score = 39.3 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 8/159 (5%)

Query: 85  SMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNH----SKDITF 140
           S+   +   +++       +A  + I+    +          R            ++   
Sbjct: 545 SVGADEDAHLNKLGNETWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCQIDEEEYAQ 604

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSR-EKVQLLLGVTGSGKTFT---MAKVIEAMQRPA 196
           F     +  + DQ +AI  +L  + S     +L+ G  G GKT      A V     +  
Sbjct: 605 FAQGFPFEETVDQESAIHAVLADMRSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQV 664

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +V+ P  +LA Q Y  FK+ F    V   V        E
Sbjct: 665 VVLVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKE 703


>gi|165923977|ref|ZP_02219809.1| transcription-repair coupling factor [Coxiella burnetii RSA 334]
 gi|165916585|gb|EDR35189.1| transcription-repair coupling factor [Coxiella burnetii RSA 334]
          Length = 1157

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 83/470 (17%), Positives = 162/470 (34%), Gaps = 74/470 (15%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQL 209
           S  QP     +   +           + G   +  ++ + E  Q P +++ P+   A  L
Sbjct: 10  SPLQPPIPRSIDNRLQWGN-------LKGDSVSLAISTLAEKNQGPLLLITPDVHSANYL 62

Query: 210 YSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER 269
           +              F S  D   P  + P  +T      S +E I   R      L   
Sbjct: 63  HRSL----------PFFSSADT--PILHFPDWETLPYDYFSPHEDIISERLLTLYRLPRL 110

Query: 270 NDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           +  I++S++   +  +   +   +    L +G+    +E    L+   Y+     +  G 
Sbjct: 111 SSGIIISALPTLLQRLPPADHLEKNTFILSVGEKFSLQENRERLISAGYRSVQQVMEHGE 170

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           +   G  I+I+P     + +R+ +F +++  I  F P + + +  +E++++     Y   
Sbjct: 171 YAQRGSIIDIYPM-GSPLPYRIELFDDEVTSIRSFDPESQRSVEKIESVRLLPAREYPLT 229

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
           +     A+ + ++    R   L         Q++               +   IE Y   
Sbjct: 230 KE----AITHFRQSW--RAKFLGNPQEAPIYQQI-----------SEGEAAAGIEYYLPL 272

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
                  E   T F Y+P+++ + + E   T+      ++   HR   L           
Sbjct: 273 FF-----ETTQTFFSYLPKNTTVILFEKLETVA--HQFWQEVEHRYEQLRH--------D 317

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ--IIRPTGLVDPPVEIRSAR- 565
             RPL         P+ + +S      E++    I +    II  TG V+   E      
Sbjct: 318 LTRPLCP-------PSELFLSFEQLRIEIKNHTQIKISDAPIIEKTGQVNFATENFPPLL 370

Query: 566 ---------TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                     ++++   EI   A QG R+L    T    E L E+L E +
Sbjct: 371 IDHKASQPFARLKNFLHEI--TAIQGGRVLFCAETAGRRETLLEFLKEID 418



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H +++  +   ++ D    K+++LV   ++  G+DIP    + I  AD+ G  +    L 
Sbjct: 856 HGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDIPTANTIIINRADRFGLAQ----LH 911

Query: 673 QTIGRAARNVNSKVILYADTITKSI 697
           Q  GR  R+ +           +++
Sbjct: 912 QLRGRVGRSHHQAYAYLLIPDQEAL 936



 Score = 40.8 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 4/103 (3%)

Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQ-LLKGIHSREKVQLLLGVTGSGKT 182
                ++ +   K+ + F+    +  + DQ AAI   ++     R   +L+ G  G GKT
Sbjct: 590 QAATGFTFSIPEKEYSLFRQAFPFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKT 649

Query: 183 ---FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
                 A +     +   V+ P  +LA Q +  F++ F    V
Sbjct: 650 EVAMQAAFIAVQNNKQVAVLVPTTLLAEQHFYNFQDRFADWPV 692



 Score = 38.2 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q   ++ + V T  +AE       +   +  +R+  +       +R
Sbjct: 647 GKTEVAMQAAFIAVQNNKQVAVLVPTTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQR 706

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEG 663
            +I ++L  GK D+++G + LL + +   + GL+ + +  + G
Sbjct: 707 QQITQELAEGKIDIIIGTHKLLSKDIRFKDLGLLIVDEEHRFG 749


>gi|154707070|ref|YP_001424606.1| transcription-repair coupling factor [Coxiella burnetii Dugway
           5J108-111]
 gi|154356356|gb|ABS77818.1| transcription-repair coupling factor [Coxiella burnetii Dugway
           5J108-111]
          Length = 1157

 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 83/470 (17%), Positives = 162/470 (34%), Gaps = 74/470 (15%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQL 209
           S  QP     +   +           + G   +  ++ + E  Q P +++ P+   A  L
Sbjct: 10  SPLQPPIPRSIDNRLQWGN-------LKGDSVSLAISTLAEKNQGPLLLITPDVHSANYL 62

Query: 210 YSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER 269
           +              F S  D   P  + P  +T      S +E I   R      L   
Sbjct: 63  HRSL----------PFFSSADT--PILHFPDWETLPYDYFSPHEDIISERLLTLYRLPRL 110

Query: 270 NDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           +  I++S++   +  +   +   +    L +G+    +E    L+   Y+     +  G 
Sbjct: 111 SSGIIISALPTLLQRLPPADHLEKNTFILSVGEKFSLQENRERLISAGYRSVQQVMEHGE 170

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           +   G  I+I+P     + +R+ +F +++  I  F P + + +  +E++++     Y   
Sbjct: 171 YAQRGSIIDIYPM-GSPLPYRIELFDDEVTSIRSFDPESQRSVEKIESVRLLPAREYPLT 229

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
           +     A+ + ++    R   L         Q++               +   IE Y   
Sbjct: 230 KE----AITHFRQSW--RAKFLGNPQEAPIYQQI-----------SEGEAAAGIEYYLPL 272

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
                  E   T F Y+P+++ + + E   T+      ++   HR   L           
Sbjct: 273 FF-----ETTQTFFSYLPKNTTVILFEKLETVA--HQFWQEVEHRYEQLRH--------D 317

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ--IIRPTGLVDPPVEIRSAR- 565
             RPL         P+ + +S      E++    I +    II  TG V+   E      
Sbjct: 318 LTRPLCP-------PSELFLSFEQLRIEIKNHTQIKISDAPIIEKTGQVNFATENFPPLL 370

Query: 566 ---------TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                     ++++   EI   A QG R+L    T    E L E+L E +
Sbjct: 371 IDHKASQPFARLKNFLHEI--TAIQGGRVLFCAETAGRRETLLEFLKEID 418



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 61/178 (34%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L      I +       P   +     +      +  + + I     +
Sbjct: 765 ILTLTATPIPRTLNMSLSGIRDLSLITTPPAKRLSVKTFVHDYSHVL--IREAILRENLR 822

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++              E L       R    H +++  +   ++ D    K+++LV  
Sbjct: 823 GGQVYFLHNDVATLAATAEKLRTIIPEARLAIAHGQMRERDLERVMSDFYHQKYNLLVCT 882

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD+ G  +    L Q  GR  R+ +           +++
Sbjct: 883 TIIESGIDIPTANTIIINRADRFGLAQ----LHQLRGRVGRSHHQAYAYLLIPDQEAL 936



 Score = 40.8 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 4/103 (3%)

Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQ-LLKGIHSREKVQLLLGVTGSGKT 182
                ++ +   K+ + F+    +  + DQ AAI   ++     R   +L+ G  G GKT
Sbjct: 590 QAATGFTFSIPEKEYSLFRQAFPFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKT 649

Query: 183 ---FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
                 A +     +   V+ P  +LA Q +  F++ F    V
Sbjct: 650 EVAMQAAFIAVQNNKQVAVLVPTTLLAEQHFYNFQDRFADWPV 692



 Score = 38.2 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q   ++ + V T  +AE       +   +  +R+  +       +R
Sbjct: 647 GKTEVAMQAAFIAVQNNKQVAVLVPTTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQR 706

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEG 663
            +I ++L  GK D+++G + LL + +   + GL+ + +  + G
Sbjct: 707 QQITQELAEGKIDIIIGTHKLLSKDIRFKDLGLLIVDEEHRFG 749


>gi|29654454|ref|NP_820146.1| transcription-repair coupling factor [Coxiella burnetii RSA 493]
 gi|29541721|gb|AAO90660.1| transcription-repair coupling factor [Coxiella burnetii RSA 493]
          Length = 1157

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 83/470 (17%), Positives = 162/470 (34%), Gaps = 74/470 (15%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQL 209
           S  QP     +   +           + G   +  ++ + E  Q P +++ P+   A  L
Sbjct: 10  SPLQPPIPRSIDNRLQWGN-------LKGDSVSLAISTLAEKNQGPLLLITPDVHSANYL 62

Query: 210 YSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER 269
           +              F S  D   P  + P  +T      S +E I   R      L   
Sbjct: 63  HRSL----------PFFSSADT--PILHFPDWETLPYDYFSPHEDIISERLLTLYRLPRL 110

Query: 270 NDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           +  I++S++   +  +   +   +    L +G+    +E    L+   Y+     +  G 
Sbjct: 111 SSGIIISALPTLLQRLPPADHLEKNTFILSVGEKFSLQENRERLISAGYRSVQQVMEHGE 170

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           +   G  I+I+P     + +R+ +F +++  I  F P + + +  +E++++     Y   
Sbjct: 171 YAQRGSIIDIYPM-GSPLPYRIELFDDEVTSIRSFDPESQRSVEKIESVRLLPAREYPLT 229

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
           +     A+ + ++    R   L         Q++               +   IE Y   
Sbjct: 230 KE----AITHFRQSW--RAKFLGNPQEAPIYQQI-----------SEGEAAAGIEYYLPL 272

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
                  E   T F Y+P+++ + + E   T+      ++   HR   L           
Sbjct: 273 FF-----ETTQTFFSYLPKNTTVILFEKLETVA--HQFWQEVEHRYEQLRH--------D 317

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ--IIRPTGLVDPPVEIRSAR- 565
             RPL         P+ + +S      E++    I +    II  TG V+   E      
Sbjct: 318 LTRPLCP-------PSELFLSFEQLRIEIKNHTQIKISDAPIIEKTGQVNFATENFPPLL 370

Query: 566 ---------TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                     ++++   EI   A QG R+L    T    E L E+L E +
Sbjct: 371 IDHKASQPFARLKNFLHEI--TAIQGGRVLFCAETDGRRETLLEFLKEID 418



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H +++  +   ++ D    K+++LV   ++  G+DIP    + I  AD+ G  +    L 
Sbjct: 856 HGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDIPTANTIIINRADRFGLAQ----LH 911

Query: 673 QTIGRAARNVNSKVILYADTITKSI 697
           Q  GR  R+ +           +++
Sbjct: 912 QLRGRVGRSHHQAYAYLLIPDQEAL 936



 Score = 40.8 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 4/103 (3%)

Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQ-LLKGIHSREKVQLLLGVTGSGKT 182
                ++ +   K+ + F+    +  + DQ AAI   ++     R   +L+ G  G GKT
Sbjct: 590 QAATGFTFSIPEKEYSLFRQAFPFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKT 649

Query: 183 ---FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
                 A +     +   V+ P  +LA Q +  F++ F    V
Sbjct: 650 EVAMQAAFIAVQNNKQVAVLVPTTLLAEQHFYNFQDRFADWPV 692



 Score = 38.2 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q   ++ + V T  +AE       +   +  +R+  +       +R
Sbjct: 647 GKTEVAMQAAFIAVQNNKQVAVLVPTTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQR 706

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEG 663
            +I ++L  GK D+++G + LL + +   + GL+ + +  + G
Sbjct: 707 QQITQELAEGKIDIIIGTHKLLSKDIRFKDLGLLIVDEEHRFG 749


>gi|114563569|ref|YP_751082.1| transcription-repair coupling factor [Shewanella frigidimarina
           NCIMB 400]
 gi|114334862|gb|ABI72244.1| transcription-repair coupling factor [Shewanella frigidimarina
           NCIMB 400]
          Length = 1178

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 59/310 (19%), Positives = 116/310 (37%), Gaps = 34/310 (10%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +   ++ Q L  + G  +  T+A +I      +I++  +   A  L  E      H  V 
Sbjct: 12  VKKGQQTQTLATLGGVSQAITLANLINNHAGTSIIVTHDTPSALSLEVELSYLLNHINVN 71

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY- 282
                          P  +T      S ++ +   R     ++ +    +V+  V+ +  
Sbjct: 72  VC-----------LFPDRETLPYDSFSPHQDLISQRLETLANIGQSQHNVVIVPVNTLMV 120

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +      +  ++ L  GD+   ++    L    Y   D     G F + G  I+IFP  
Sbjct: 121 RLPPKSFMTANVMVLNKGDTYSLQQARQHLTDTGYHIVDQVYEHGEFAIRGSIIDIFP-T 179

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
                 R+ +F +++E I  F   T +     + I++     +    PT N A++  ++ 
Sbjct: 180 GSKQPLRIELFDDEVESIRFFDVDTQRSGMARDAIRMLPAKEF----PTDNHAIEGFRQR 235

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            + R   + K     EA+ + Q ++ +L           IENY          +   TLF
Sbjct: 236 YRRRFEVISK-----EAESVYQLVSRNL-------MPAGIENYLPLFF-----DDTATLF 278

Query: 463 EYIPEDSLLF 472
           +Y+P++S L 
Sbjct: 279 DYLPQNSQLI 288



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R          + I     +
Sbjct: 775 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDK--ATAREAILREILR 832

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E   + + +     R +  H +++  +  +++ D    +F+VLV  
Sbjct: 833 GGQVYYLHNNVETIEKTAQNIRDLLPEARVITAHGQMRERDLEKVMSDFYHQRFNVLVCT 892

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +
Sbjct: 893 TIIETGIDVPSANTIIIDRADMFGLAQ----LHQLRGRVGRSHHQAYAYMMTPHPKRM 946


>gi|218440658|ref|YP_002378987.1| transcription-repair coupling factor [Cyanothece sp. PCC 7424]
 gi|218173386|gb|ACK72119.1| transcription-repair coupling factor [Cyanothece sp. PCC 7424]
          Length = 1168

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 87/573 (15%), Positives = 177/573 (30%), Gaps = 71/573 (12%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +LL  +   + +Q L G+    K    + + +      +++ P    A +  ++ +    
Sbjct: 18  ELLSKLQRHQTLQ-LSGIPRLPKGLIASSLAQIQSHNLLIICPTLEEAGRWATQLEAMGW 76

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
                Y  S    Y  +   P ++    +   ++        + +     +    +V++ 
Sbjct: 77  KTVHFYPTSEGSPY--DTLNPESEMIWGQLQVLSGIQTPEAIATSEPETTKQLYAIVTTE 134

Query: 279 SCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             +   +          +  + G ++E K L  +L +  Y+R ++    G +   GD ++
Sbjct: 135 KALQPHLPPPNKLYSYCLNFQQGMTLEAKTLDQNLTQLGYERVNLVETEGQWSRRGDIVD 194

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP   E +  R+  FG+++E++ EF P T + + ++  + +   S +      +  +  
Sbjct: 195 IFPVSAE-LPVRLEWFGDELEQLREFDPSTQRSLDHITQLTLTPISFFPIITDEILRSEN 253

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            +   L                           E LE   +    E   R+L    P   
Sbjct: 254 LLSSYLS-------------------------SEELEGLDNRNFPEGMQRFLGLAFP--Q 286

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           P +L  Y+P ++L   DE                 +   L      LP         F +
Sbjct: 287 PASLLNYLPSNTLCVFDEIERCQAHSDRWIEYIEEQWQDL---DPPLPKIHR----IFRD 339

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
              +      +  T  + E        ++   RP  +            Q   + + +  
Sbjct: 340 SLEIAKEFSNLYLTEITEESSASSIPNIDLSSRPLPV---------TPNQFAKLAEILRG 390

Query: 578 AAQ-------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             +           I L          L   L E +   +++ +    L   +       
Sbjct: 391 KREIYSGISLNKYAIWLVSAQPSRTVSL---LEEHDCPAQFIPNPKDYLAIDKYQTQTTA 447

Query: 631 GKFDVLVGINLLR-EGLDIPECGLVAILDADKEG-FLRSKTSLIQTIGRAARNV------ 682
                L    L   EG  +P   +V + D +  G       S I+   RAA         
Sbjct: 448 ---VALKYSGLAELEGFILPTFRIVVVTDKEFFGQQSLVTGSYIRKRRRAASKQVNLDKL 504

Query: 683 --NSKVILYADTITKSIQLAIDETTRRREKQLE 713
                V+     I K I+L I E+      Q  
Sbjct: 505 RPGDYVVHRNHGIGKFIKLEILESREYILIQYA 537



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 73/191 (38%), Gaps = 19/191 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      + E  +  T    PP   R  +T +     + +   I    
Sbjct: 774 VLTLTATPIPRTLYMSLSGVREMSLITT----PPPSRRPIKTHLTPYNPDALRTAIRNEL 829

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G +I   V      E++   + +     R    H ++   E    +     G+ D+LV
Sbjct: 830 DRGGQIFYVVPRVEGIEEVAAEIRDMIPTARIAIAHGQMSVSELEPTMLAFNNGEADILV 889

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + + DA K G L     L   +GR+    ++ ++          
Sbjct: 890 CTTIIESGLDIPRVNTIIVEDAQKFG-LSQLYQLRGRVGRSGIQAHAWLVY-------PH 941

Query: 698 QLAIDETTRRR 708
           + A+ ET R+R
Sbjct: 942 KAALTETARQR 952



 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 146 DYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTFTMAKVIEAM----QRPAIVMA 200
            Y P+ DQ  AI ++ +  ++ R   +L+ G  G GKT    + I        +    +A
Sbjct: 620 PYQPTPDQIKAIQEVKRDMMNERPMDRLVCGDVGFGKTEVAVRAIFKAVTSGNKQVAFLA 679

Query: 201 PNKILAAQLYSEFKNFFPH 219
           P  IL  Q Y   K  F  
Sbjct: 680 PTTILTQQHYHTLKERFAP 698


>gi|207110031|ref|ZP_03244193.1| excinuclease ABC subunit B [Helicobacter pylori HPKX_438_CA4C1]
          Length = 131

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 75/121 (61%), Positives = 94/121 (77%)

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           SE+  +ER  +IR LRL +FD+L+GINLLREGLD+PE  LVAI+DADKEGFLRS+TSLIQ
Sbjct: 11  SEIDAIERNHLIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQ 70

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           T+GRAARN N KV+LYA  IT+S+Q A + T+ RR KQ E NK HNI P++V   + E +
Sbjct: 71  TMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEEL 130

Query: 734 D 734
            
Sbjct: 131 K 131


>gi|164685710|ref|ZP_01946737.2| transcription-repair coupling factor [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218583|ref|YP_002305370.1| transcription-repair coupling factor [Coxiella burnetii CbuK_Q154]
 gi|164601218|gb|EAX32680.2| transcription-repair coupling factor [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212012845|gb|ACJ20225.1| transcription-repair coupling factor [Coxiella burnetii CbuK_Q154]
          Length = 1157

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 83/470 (17%), Positives = 162/470 (34%), Gaps = 74/470 (15%)

Query: 150 SGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQL 209
           S  QP     +   +           + G   +  ++ + E  Q P +++ P+   A  L
Sbjct: 10  SPLQPPIPRSIDNRLQWGN-------LKGDSVSLAISTLAEKNQGPLLLITPDVHSANYL 62

Query: 210 YSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER 269
           +              F S  D   P  + P  +T      S +E I   R      L   
Sbjct: 63  HRSL----------PFFSSADT--PILHFPDWETLPYDYFSPHEDIISERLLTLYRLPRL 110

Query: 270 NDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           +  I++S++   +  +   +   +    L +G+    +E    L+   Y+     +  G 
Sbjct: 111 SSGIIISALPTLLQRLPPADHLEKNTFILSVGEKFSLQENRERLISAGYRSVQQVMEHGE 170

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           +   G  I+I+P     + +R+ +F +++  I  F P + + +  +E++++     Y   
Sbjct: 171 YAQRGSIIDIYPM-GSPLPYRIELFDDEVTSIRSFDPESQRSVEKIESVRLLPAREYPLT 229

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
           +     A+ + ++    R   L         Q++               +   IE Y   
Sbjct: 230 KE----AITHFRQSW--RAKFLGNPQEASIYQQI-----------SEGEAAAGIEYYLPL 272

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
                  E   T F Y+P+++ + + E   T+      ++   HR   L           
Sbjct: 273 FF-----ETTQTFFSYLPKNTTVILFEKLETVA--HQFWQEVEHRYEQLRH--------D 317

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ--IIRPTGLVDPPVEIRSAR- 565
             RPL         P+ + +S      E++    I +    II  TG V+   E      
Sbjct: 318 LTRPLCP-------PSELFLSFEQLRIEIKNHTQIKISDAPIIEKTGQVNFATENFPPLL 370

Query: 566 ---------TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                     ++++   EI   A QG R+L    T    E L E+L E +
Sbjct: 371 IDHKASQPFARLKNFLHEI--TAIQGGRVLFCAETAGRRETLLEFLKEID 418



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H +++  +   ++ D    K+++LV   ++  G+DIP    + I  AD+ G  +    L 
Sbjct: 856 HGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDIPTANTIIINRADRFGLAQ----LH 911

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
           Q  GR  R+ +           +++     +T +R
Sbjct: 912 QLRGRVGRSHHQAYAYLLIPDQEALTA---DTEKR 943



 Score = 40.8 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 4/103 (3%)

Query: 124 TPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQ-LLKGIHSREKVQLLLGVTGSGKT 182
                ++ +   K+ + F+    +  + DQ AAI   ++     R   +L+ G  G GKT
Sbjct: 590 QAATGFTFSIPEKEYSLFRQAFPFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKT 649

Query: 183 ---FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
                 A +     +   V+ P  +LA Q +  F++ F    V
Sbjct: 650 EVAMQAAFIAVQNNKQVAVLVPTTLLAEQHFYNFQDRFADWPV 692



 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q   ++ + V T  +AE       +   +  +R+  +       +R
Sbjct: 647 GKTEVAMQAAFIAVQNNKQVAVLVPTTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQR 706

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEG 663
            +I ++L  GK D+++G + LL + +   + GL+ + +  + G
Sbjct: 707 QQITQELAEGKIDIIIGTHKLLSKDIRFKDLGLLIVDEEHRFG 749


>gi|119774467|ref|YP_927207.1| transcription-repair coupling factor [Shewanella amazonensis SB2B]
 gi|119766967|gb|ABL99537.1| transcription-repair coupling factor [Shewanella amazonensis SB2B]
          Length = 1155

 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 71/434 (16%), Positives = 147/434 (33%), Gaps = 55/434 (12%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G  +  T+A++  +     +++  +   A  L +E         ++              
Sbjct: 26  GVARALTLAEMTCSYAGTTLIVTSDTPTALVLEAELGYLLKPRGIDIC-----------L 74

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMIVQ 296
            P  +T      S ++ +   R     +L      +V+  ++ +   +      +  ++ 
Sbjct: 75  FPDRETLPYDSFSPHQDLISQRLETLSNLERGKGRLVIVPLTTLMVRLPPKAFLAANVLI 134

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK GD  + +++   LV   Y   +     G F + G  ++IFPS   +   R+ +F ++
Sbjct: 135 LKKGDRYQLQQMRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSGASE-PLRIELFDDE 193

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           +E I  F P T +    V++I++     +    PT + A++  ++  +      E     
Sbjct: 194 VESIRHFDPETQRSSGEVDSIRMLPAREF----PTDSQAIEGFRQRYRRT---FETVNNA 246

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
            E+  + Q ++ +L           IENY          +   TLF+Y+PE+  +    +
Sbjct: 247 AES--VYQLVSRNL-------MPAGIENYLPLFF-----DDTATLFDYLPEELQIITTGA 292

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFR--LPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
                +          R         R  LP     + L            +        
Sbjct: 293 LHQAAEHH--LGEIHSRYEDRQVDPLRPLLPP----KTLYQTTEELFARFKLYPRIDLSG 346

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
            E ++         IR    +  P+E              +   AQ G RI     ++  
Sbjct: 347 DEGDKTLEAAPLPDIRANHKLKQPLE-------------SLANWAQGGQRIAFVAESEGR 393

Query: 595 AEDLTEYLYERNIR 608
            E L E L +  ++
Sbjct: 394 REALLELLGKAGLK 407



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+          V + I     +G 
Sbjct: 755 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDKATVREAILREILRGG 814

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E    D+ E L E  +     H +++  E   ++ D    +F+VLV  
Sbjct: 815 QVYYLHNQVETIEKAAQDIRELLPEARVVTA--HGQMRERELERVMSDFYHQRFNVLVCT 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +
Sbjct: 873 TIIETGIDVPSANTILIDRADHFGLAQ----LHQLRGRVGRSHHQAYAYLMTPHPKLM 926


>gi|310829353|ref|YP_003961710.1| transcription-repair coupling factor [Eubacterium limosum KIST612]
 gi|308741087|gb|ADO38747.1| transcription-repair coupling factor [Eubacterium limosum KIST612]
          Length = 1140

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 80/522 (15%), Positives = 172/522 (32%), Gaps = 71/522 (13%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I ++ + I     V  L  V    K F      E      + +  +   A +  +E    
Sbjct: 14  IEKIFEAIEESIGVN-LSNVKTGLKGFLTLLTYEHFDTNVLFITHSDRDAQK-KAEILRK 71

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           F    V Y+             P  D +     + ++ I   R +    L      I+V+
Sbjct: 72  FRDTGVLYYP----------LEPVHDYF---SDAHSQDIAHQRMTVIEKLFSEKKHIIVA 118

Query: 277 SVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           S+  I   +   E+   +   +  GD+ + + L+  LV   Y+R      +G F + G  
Sbjct: 119 SIDSILKKMVPKEAMEALFFSINNGDTFDLEALVVKLVNLGYERVYQVESKGQFALRGGI 178

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+    ED A R+  F ++++ +  F   +      +E ++I      V         
Sbjct: 179 LDIYNVTSED-AVRIEFFDDEVDSMRLFDVDSQLSYDQIENVRIAPAKEIVLSEEERQRI 237

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
            K I           +K         L +++  +    + T             T     
Sbjct: 238 FKMI----------HKKYDGNELYMELVEKLEQEGAQYDET-----------LFTFIKEN 276

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           +   +  +Y+ ++ ++  DE            +  +    +L   G+ LP   +    +F
Sbjct: 277 D---SFMDYVGKN-IVIWDEYTRIKETYDIFIKKTWLDYESLITQGYILPEEKN----KF 328

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             ++ +  +     A          + +   +  +   L     ++ S   Q     D +
Sbjct: 329 FTFHHIEKSLEGCPAI--------KEYLFNSRAKKGMNLDMNSRDLESFAGQFPLFLDFL 380

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           N     G RI +   T +  E + +YL ++ +                 I +   G   V
Sbjct: 381 NRRLTLGYRIHICCKTDKTRETVKQYLVDQEV--------------FNFIENEGPG---V 423

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            + +  + EG ++ +  +V I +++     R+     +  GR
Sbjct: 424 QLSVGEISEGFEMEDEKVVYINESEIFKEKRTSQRKKKHKGR 465



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 69/197 (35%), Gaps = 22/197 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQV-----EDVYDEINLA 578
            + +SATP    L           +R   +++ P E  R  +T V       + D IN  
Sbjct: 748 VLTLSATPIPRTLHMSMTG-----VRDMSVIEEPPEGRRPVQTYVMAYNPLIIQDAINRE 802

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVL 636
             +G ++           ++   +       R    H  +   E  +I+ D     FD+L
Sbjct: 803 LGRGGQVYYVHNRVHDIHEVAIDVQSLVPDARIVVAHGRMSGSELEDIMVDFLNHDFDIL 862

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  GLD+     + I + D  G  +    L Q  GR  R+               
Sbjct: 863 VTTTIVESGLDVKNANTMIIDEGDHFGLSQ----LYQLRGRVGRSDAQAYAYVTHK---- 914

Query: 697 IQLAIDETTRRREKQLE 713
            +  + E  ++R K ++
Sbjct: 915 -KEILTEVAQKRLKAIK 930


>gi|16331597|ref|NP_442325.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
 gi|3914015|sp|Q55750|MFD_SYNY3 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|1001661|dbj|BAA10395.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
          Length = 1199

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 124/341 (36%), Gaps = 44/341 (12%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             L + +  R  VQ L G+    K   ++ + +++++  +V+      A +  ++ +   
Sbjct: 54  KDLREKLQKRGHVQ-LSGLPRLPKGLIVSSLAQSLEKNLLVITATLEEAGRWTAQLELMG 112

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
                 Y  S    Y P      ++    +   + E I            +     +V++
Sbjct: 113 WQTVNFYPTSEASPYDPGRL--ESEMVWGQMQVLAELIQ---------GHQVKGKAIVAT 161

Query: 278 VSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
              +   +  V +  +  + L+ G  ++ K L  +L +  Y+R       G +   GD +
Sbjct: 162 EKALQPHLPPVATLREYCLALRRGQEMDSKSLELTLARLGYERGSTVETEGQWSRRGDIV 221

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IFP   E +  R+  FG+++E+I EF P + + + ++  + +   S             
Sbjct: 222 DIFPVSAE-LPVRLEWFGDELEKIREFDPASQRSLDDLTGLVLTPTSF-----------D 269

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           + I+  L  + I+L   G   E ++L                    E   R+L       
Sbjct: 270 QVIEPALNAQAIDLSAWGEDAETEQLF-----------------GKEGLQRFLGL--AFT 310

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
            P  L +Y+P +++  +DE           +       + L
Sbjct: 311 EPACLLDYLPTETVCVLDEPEQCAAHSERWFEAVAQDWSAL 351



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 71/191 (37%), Gaps = 19/191 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I E  +  T    PP   R  +T +     E +   I    
Sbjct: 797 VLTLTATPIPRTLYMSLSGIREMSLITT----PPPSRRPIKTHLSPYNPEVIRTAIRNEL 852

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      E+L   L +     R    H +++  E    +     G+ D+LV
Sbjct: 853 DRGGQVFYVVPRIEGIEELGGQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILV 912

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + + DA K G  +    L   +GR+    ++ ++          
Sbjct: 913 CTTIIEAGLDIPRVNTIIVEDAQKFGLAQ-LYQLRGRVGRSGIQAHAWLLY-------PN 964

Query: 698 QLAIDETTRRR 708
           Q  + E  R R
Sbjct: 965 QKQLTEKARLR 975



 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 146 DYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVIEAM----QRPAIVMA 200
            Y P+ DQ  A+  + + +   R   +L+ G  G GKT    + I        +   ++A
Sbjct: 643 PYQPTPDQLKAVQDVKRDLEGDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGNKQVALLA 702

Query: 201 PNKILAAQLYSEFKNFFPH 219
           P  +L  Q Y   K  F  
Sbjct: 703 PTTVLTQQHYHTLKERFAP 721



 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI-NLLREGL 646
           TVLT++    L E      I +  ++      E+ EI+  L+ G+ D++VG   +L   +
Sbjct: 705 TVLTQQHYHTLKERFAPYPITIGLLNRFRTASEKKEILAKLKSGELDIVVGTQQVLGTSV 764

Query: 647 DIPECGLVAILDADKEG 663
              + GL+ I +  + G
Sbjct: 765 KFKDLGLLVIDEEQRFG 781


>gi|145298863|ref|YP_001141704.1| transcription-repair coupling factor [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851635|gb|ABO89956.1| transcription-repair coupling factor [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 1154

 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 119/312 (38%), Gaps = 36/312 (11%)

Query: 163 GIHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
            + ++   +L LG +TGS  +   A++     RP +++  +   A +L  E +       
Sbjct: 8   ALPAKAGQKLTLGQLTGSSLSLVAARLTTQANRPVLLVTADTPSALRLEQELQFLLADQG 67

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
                       P    P  +T      S ++ I   R      L + +  +++  +S +
Sbjct: 68  C-----------PVLMFPDWETLPYDTFSPHQDIISQRLETLYKLPQMSAGVLIVPISTL 116

Query: 282 YGIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
               + + Y  +  + +K G  +  ++L   L +  Y   D  +  G F   G  +++FP
Sbjct: 117 MLRCAPQVYLDKYSLMVKAGQRLNLQQLRGRLAEAGYVAVDQVLEHGEFAARGSLLDLFP 176

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
               +  +R+  F ++++ I  F P T +    V+T+ +     +    PT   A++  +
Sbjct: 177 M-GSNSPYRIDFFDDEVDSIRPFDPETQRSSEPVKTVSLLPAREF----PTDEAAIELFR 231

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
            + + +      EG +              + +        IE Y      +       +
Sbjct: 232 GQFREQFELSRAEGSV-------------YQEVSKGRWPAGIEYYLPLFFHQT-----AS 273

Query: 461 LFEYIPEDSLLF 472
           LF+Y+P+++LL 
Sbjct: 274 LFDYLPDNTLLL 285



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 66/180 (36%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA-QQGL 583
            + ++ATP    L      + +  I  T            R Q   V  E  L   ++G 
Sbjct: 757 ILTLTATPIPRTLNMAMAGMRDLSIIATPPAKRLAIKTFVRQQDPAVTREAVLRELKRGG 816

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E    DL E + E  I +   H +++  +   ++ D    +F++LV  
Sbjct: 817 QVYYLHNDVESIEKCAGDLAELVPEARIGIA--HGQMRERDLERVMSDFYHQRFNLLVCT 874

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K +  
Sbjct: 875 SIIETGIDVPSANTIIMDRADHLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKLMSK 930


>gi|16126087|ref|NP_420651.1| transcription-repair coupling factor [Caulobacter crescentus CB15]
 gi|221234857|ref|YP_002517293.1| transcription-repair coupling factor [Caulobacter crescentus
           NA1000]
 gi|13423283|gb|AAK23819.1| transcription-repair coupling factor [Caulobacter crescentus CB15]
 gi|220964029|gb|ACL95385.1| transcription-repair coupling factor [Caulobacter crescentus
           NA1000]
          Length = 1155

 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 82/454 (18%), Positives = 148/454 (32%), Gaps = 50/454 (11%)

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
           K I        L G         MA +  A       +A +   A       K F P   
Sbjct: 6   KQIAKAAGGLTLAGAPEGFDALVMADIARARGGLTAFVARDTARAGAFIDALKFFAPEIE 65

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-----ERNDCIVVS 276
              F             P  D         +  +   R +    L       +   +V++
Sbjct: 66  AVLF-------------PSWDCLPYDRIGPSSGVSATRMATLSRLARGLGESKAAILVIA 112

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + + +  + + E   +     K+G +V+ K+L        Y R      RG F + G  I
Sbjct: 113 APALLQRVPTKEVLLRASYAAKVGANVDIKDLERYFAVNGYTRASTVSERGEFAIRGGVI 172

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +++P   E+   R+ +FG+ +E I  F P T +  + ++ I +   S  +     ++   
Sbjct: 173 DVYPPAAEE-PVRLDLFGDTLESIRAFDPETQRSTKQLKEIDLLPVSEALLDADGISRFR 231

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
                  K  + E    G                  +   G    +E++      R    
Sbjct: 232 -------KGYVAEFGAPGD-----------DALYAAVSEGGRRAGLEHWLPLFYERM--- 270

Query: 457 PPPTLFEYIPEDSLLFVDE--SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
              TLF+Y+P  +L+ VD   +     +++ +      R +   +  +R P   +   L 
Sbjct: 271 --ATLFDYLPAGALIGVDNQATEARDERLAMIQDAYDARASADRKSAYR-PLAPEALYLT 327

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            EEW            TP      Q QG+ V  +    G V      + +    E   D 
Sbjct: 328 AEEWERELSDRTHRRFTPF-----QPQGLDVIDLGAKLGRVFAAERAQDSVNLFEATADH 382

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
               A QG R+L    ++  +E L   L +  ++
Sbjct: 383 AKALAAQGKRVLFASWSEGSSERLGTMLADHGLK 416



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 99/265 (37%), Gaps = 38/265 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     I E  I  T  VD    +R+  +  +   + + +     +
Sbjct: 756 HMLTLTATPIPRTLQMALSGIREMSIIATPPVDRLA-VRTYISPFDPVTLREALLREKYR 814

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V   +  ED+ ++L  +   V+++  H ++   +  +++     G++DVL+  
Sbjct: 815 GGQSYYVVPRIKDLEDIEKFLRTQVPEVKFVVGHGQMAATQLEDVMTAFYEGQYDVLLAT 874

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+           + KS+  
Sbjct: 875 TIVESGLDIPSANTLIVHRADMFGLAQ----LYQIRGRVGRSKARAYAYLTTPVEKSL-- 928

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                                 P + K  ++++ +D +       ++        +L   
Sbjct: 929 ---------------------TPSAEKRLQVLQSLDSLGAGFQLASHDLDQRGGGNLLGD 967

Query: 759 KGKAHLK----SLRKQMHL-AADNL 778
           +   H+K     L +QM   A   L
Sbjct: 968 EQSGHIKEIGVELYQQMLEDAVAEL 992



 Score = 41.6 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 6/137 (4%)

Query: 85  SMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQ 144
           ++   +    + Q      +   R++      +   +             S     F  +
Sbjct: 545 NVQLDKLGGAAWQGRKAKAKERLRVMAEGLIQIAAARQLKTVEETDPP--SGVFDEFCAR 602

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMA 200
             Y  + DQ +AI  +L+ + S +   +L+ G  G GKT      A V+    +   ++ 
Sbjct: 603 FPYEETDDQLSAIHDVLEDLSSGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQVAIVC 662

Query: 201 PNKILAAQLYSEFKNFF 217
           P  +LA Q Y  FK+ F
Sbjct: 663 PTTLLARQHYKTFKDRF 679


>gi|297200238|ref|ZP_06917635.1| transcription-repair coupling factor [Streptomyces sviceus ATCC
           29083]
 gi|197717008|gb|EDY61042.1| transcription-repair coupling factor [Streptomyces sviceus ATCC
           29083]
          Length = 1190

 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 57/344 (16%), Positives = 121/344 (35%), Gaps = 43/344 (12%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+A+ +       ++ + L    + + F +A +     RP + +      A  L +  +
Sbjct: 28  PALAEAITAAQDGNRMHVDLVGPPAARPFAIAALAREAGRPVLAVTATGREAEDLAAALR 87

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +  P   V  + S+ +    E   PR+DT   + +     + R+ H            +V
Sbjct: 88  SLLPSEGVVEYPSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPRPDDPETGPVSVV 142

Query: 275 VSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           V+ V  +      G+G +E  +     L+ G + +   ++ +L    Y R ++   RG F
Sbjct: 143 VAPVRSVLQPQVKGLGDLEPVA-----LRTGQTADLNAIVEALAAAAYARVELVEKRGEF 197

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTP 388
            V G  +++FP   E+   RV  +G+D+EEI  F     + +   +  +        +  
Sbjct: 198 AVRGGILDVFPP-TEEHPLRVEFWGDDVEEIRYFKVADQRSLEVADHGLWAPPCRELLLT 256

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
                 A       L  +  EL                   L  +    + + +E+ +  
Sbjct: 257 DDVRARA-----RALAEQHPELGD----------------LLGRIAEGIAVEGMESLAPV 295

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L           L + +P+ ++  V +      + S +      
Sbjct: 296 LVDDMEL-----LIDVLPKGAMAVVCDPERVRTRASDLVATSQE 334



 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 65/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + +  PP E     T V     + +   I    
Sbjct: 791 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEEKQIGAAIRREL 846

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 847 LREGQVFYIHNRVESIDRAASRLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLV 906

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R        +     K  
Sbjct: 907 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRERGYAYFLYPPEKP- 961

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 962 ---LTETAHERLATIAQHTEMG 980


>gi|309809624|ref|ZP_07703481.1| transcription-repair coupling factor [Lactobacillus iners SPIN
           2503V10-D]
 gi|308170105|gb|EFO72141.1| transcription-repair coupling factor [Lactobacillus iners SPIN
           2503V10-D]
          Length = 1110

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 101/233 (43%), Gaps = 17/233 (7%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F             P  +T   + +  +      R  A   LL +   
Sbjct: 68  LVELFEENMVHFFPVE----------PLLET---QAAVSSLDELSQRLDAMSFLLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            GD ++I+P ++    +R+  F ++I+ I  F  ++ +   ++  + I     
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNSVSQRTKDSLTEVVIEPADD 226



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V +       +  
Sbjct: 712 VLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPIQTYVTEETPNIVREACLRELARNG 771

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I       +  +    YL +     R  Y+H  +   +  +I+      KFD+LV   +
Sbjct: 772 QIFFLHNKIQDIDQKVAYLSQLIPEARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTI 831

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+D+P    + + +AD  G L     L   IGR++R   +  +   D +
Sbjct: 832 IETGVDLPNVNTLLVENADTYG-LSQLYQLRGRIGRSSRLAYAYFLYKRDKV 882


>gi|153007315|ref|YP_001381640.1| transcription-repair coupling factor [Anaeromyxobacter sp. Fw109-5]
 gi|152030888|gb|ABS28656.1| transcription-repair coupling factor [Anaeromyxobacter sp. Fw109-5]
          Length = 1229

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 86/547 (15%), Positives = 175/547 (31%), Gaps = 68/547 (12%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFK 214
           A++ + + +  +  ++ G+ G+ +      ++    A  R  + +AP++  A  L  +  
Sbjct: 18  ARVSRALETDRRADVV-GLLGAARGLLARDLLAPGPARARSLLAVAPDEDDAEALARDLA 76

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL---ERND 271
            F   +AV               +P        + S +  ++  R SA   L    +   
Sbjct: 77  FFLGPDAVLR-------------LPADAVLPYDDLSPDRGVEMERLSALARLHLAPDGAK 123

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            IVVS+ +    +     +      L  G SVE++ L + LV   + R  +    GTF V
Sbjct: 124 AIVVSARALARRMVPRRVFEAGADLLGKGVSVEREALAAKLVLLGFTRTPLVEDPGTFAV 183

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++++ S  +    R+  FG++IE    F P + +    V  + +      +     
Sbjct: 184 RGGIVDLW-SPADPAPVRLEFFGDEIESCRAFDPQSQRSEGEVAEVLLCPAREALFSEEG 242

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                            +           R   R+   L+ ++       +E        
Sbjct: 243 KEA-------------AKAAVRDAAERVNRPTSRVREVLDAIDAGTPFFGLEALLPGFHP 289

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG-DFHRKATLAEYGFRLPSCMDN 510
              G    TLF+Y+P  +  +VD++      +  +        +A +      LP     
Sbjct: 290 GGLG----TLFDYLPPGTAAYVDDASGVEEALLELDAELAREHEAAVRREELALPPAAHF 345

Query: 511 RPLRFEEWNC------LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
            P               R    + +A P  + L     +  E I    G           
Sbjct: 346 LPAAEALARLAERPVVRRHGVWLGTAEPIRFSLGDTHALRGE-IEAAHGD---------- 394

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
              +  +   ++   ++G+  ++   +    + L   L +R   VR +H       R   
Sbjct: 395 EGALAPLTRRLDDWRRRGVAAVVACGSASTVDRLRRLLEDRRQAVR-VHPGQPGDARAIY 453

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
              +    F        +  G    E GL  + D +  G        ++   R  +  N+
Sbjct: 454 DPAIHAHVF-----TGEISAGFVDGEGGLAVVADEEIFG------RRVRKKARRTKEENA 502

Query: 685 KVILYAD 691
               + D
Sbjct: 503 FAAAFRD 509



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 70/194 (36%), Gaps = 15/194 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L      + +  I  T   D       +     QV  V + I    ++
Sbjct: 791 VLTLTATPIPRTLHMSLAGVRDLSIIATPPEDRRAIRTFVMKFDPQV--VRESIETELKR 848

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++       R    + ++L +     R    H ++   +  E++      + DVL+  
Sbjct: 849 GGQVYFVHNRVRSIAAMQKFLADIVPSARVGVAHGQMAEGKLEEVMSRFVRKELDVLLAT 908

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD----TITK 695
           +++  GLDIP    + +  AD  G  +    L Q  GR  R+               +TK
Sbjct: 909 SIIESGLDIPSANTIIVNRADHFGLAQ----LYQIRGRVGRSRERAYAYLLVPARRPVTK 964

Query: 696 SIQLAIDETTRRRE 709
             Q  ++   R  E
Sbjct: 965 DAQKRLEVLQRFSE 978



 Score = 38.5 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 15/204 (7%)

Query: 107 ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS 166
            +L++    LL        H   +     +    F+ +  +  + DQ  AIA +L+ +  
Sbjct: 592 EQLLKMAAELLDIYAARAAHPGHAFGEPDEIFREFEAEFPWEETPDQAKAIADVLRDMRK 651

Query: 167 REK--------VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           +           +L+ G  G GKT      A +    ++   V+ P  +LA+Q    F+ 
Sbjct: 652 QRGGPAAAAPMDRLVCGDVGYGKTEVAMRAAMLAVLSRKQVAVLVPTTVLASQHERTFRE 711

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
            F    V            E      D    K   +   +   R  A   +  +   +VV
Sbjct: 712 RFKGYPVRIEAISRMKSAEEVKQVLKDVAAGKVDVV---VGTHRLLA-ADVSFKELGLVV 767

Query: 276 SSVSCIYGIGSVESYSQMIVQLKI 299
                 +G+   E   ++   + +
Sbjct: 768 VDEEQRFGVAHKERLKKLRRLVDV 791


>gi|159899175|ref|YP_001545422.1| transcription-repair coupling factor [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892214|gb|ABX05294.1| transcription-repair coupling factor [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 1207

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 89/518 (17%), Positives = 176/518 (33%), Gaps = 65/518 (12%)

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
               R ++++A     A +++++   +   N V  F             P TDT   +  
Sbjct: 53  TRQHRSSLLIAATPDAAVRMHADLTAWLGEN-VMLF-------------PPTDTLPYEHM 98

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKEL 308
           S +  I   R +    L       VV+SV  +     + E +      L+ GD  + ++L
Sbjct: 99  SADIGIVAQRLAVLGRLHASEPICVVASVKALMQPTMTPEEFQFATRLLRQGDQHDPRKL 158

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           L+  V   Y+        G     G  I+IFP    D   R+  + + +E +  + P++ 
Sbjct: 159 LAHWVSLGYRVGPTAEQPGDLSQRGGIIDIFPP-TSDRPIRLEFWDDQLESLRIYDPISQ 217

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +  + V  I+I               A+K I++   +++  L +E +   A         
Sbjct: 218 RSDKRVRQIQISPAHEIPF--WRRTEAIKRIEQ---LQIASLRREVQHEWAT-------- 264

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPP-PTLFEYIPEDSLLFVDESHVTIPQ-ISGM 486
             E LET    +    Y+ +   R P E     L++++P  +++ + E H    Q I   
Sbjct: 265 AREHLETGQRFEGRAFYAPFF--RTPHEAAEAGLWQHLPASAIILLSEEHELNAQGIELQ 322

Query: 487 YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT---TIVVSATPGSWELEQCQGI 543
              D  R   +      LP      PL    +          + +S  P + +       
Sbjct: 323 SHADLVRSTQIENNE--LPPDF-PFPLIAWTFIRRSIQRWSCLNLSNQPIADDQNDSFVH 379

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
            +    +            S   Q + +++++      G R++L         +L     
Sbjct: 380 EINTFSQAA----------SYGGQTDRLFEDLRERLVGGERVVLISPQASRLRELA---S 426

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           + N+    +  E    +  +     + G   +++    L  G       L  + D++  G
Sbjct: 427 QHNLA---LIGEEDGPDVDDPP--FQSGT--IIIRHGNLSGGFSSDPLRLTILSDSEIFG 479

Query: 664 FLR----SKTSLIQTI--GRAARNVNSKVILYADTITK 695
           + +    S  +  Q     R A   + KV  Y   I  
Sbjct: 480 WQQRRALSTRARKQRTESDRTAFLQSLKVGDYVVHIEH 517



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 10/118 (8%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            L + + E  I V   H ++      ++I     G FDV V   ++  G+D+P    + I
Sbjct: 857 RLQKLVPEARIGVG--HGQMPEKALEKVILQFFEGLFDVFVCTTIIESGIDVPSANTMII 914

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE-KQLE 713
            DA   G  +    L Q  GR  R+            TK++    +E  +R E  Q  
Sbjct: 915 DDATTYGLAQ----LYQLRGRVGRSTQRGYAYMFYNPTKAMG---EEAQKRLEAIQEA 965


>gi|260887854|ref|ZP_05899117.1| transcription-repair coupling factor [Selenomonas sputigena ATCC
           35185]
 gi|330838722|ref|YP_004413302.1| transcription-repair coupling factor [Selenomonas sputigena ATCC
           35185]
 gi|260862360|gb|EEX76860.1| transcription-repair coupling factor [Selenomonas sputigena ATCC
           35185]
 gi|329746486|gb|AEB99842.1| transcription-repair coupling factor [Selenomonas sputigena ATCC
           35185]
          Length = 1118

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 126/316 (39%), Gaps = 25/316 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  +  ++++    R    L+ G++GS K    A      ++P +++  ++       ++
Sbjct: 10  QDGSARKIVEAFSRRAGKTLVYGLSGSQKHALFAAACNTAEKPVVIVTHSREAIEAWRAD 69

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                P   +               +P  D    + ++   +   +R      LL++N  
Sbjct: 70  LTALLPTREL-------------MELPEVDMMAVEATAKGMERTALRMGVLGRLLKKNPV 116

Query: 273 IVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV++  +     G S   + +M ++L++G ++ ++ LLS LV+  Y+        G F  
Sbjct: 117 IVLAHAAAAVQKGVSRRDFERMSLRLEVGATLSRETLLSRLVELGYEAAGEVDGLGQFSA 176

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++I+P +   +  R+  F ++I+ + EF P T + +RNV +  +   +   TP  +
Sbjct: 177 RGGIVDIYPLNAS-LPLRLEFFDDEIDSLREFDPATRRSVRNVPSAVVLPVA---TPEES 232

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI------TYDLEMLETTGSCQSIENY 445
              A      E +  +I  E       AQ+L +         +  E L       +   +
Sbjct: 233 GEAATFLSYLEGEGAVIFDEPLRTRESAQKLVKETPELRSKLFSWEELVAGAEGNAT-FF 291

Query: 446 SRYLTGRNPGEPPPTL 461
           +  +  +  G  P +L
Sbjct: 292 AALMLQKIHGAEPDSL 307



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 75/202 (37%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-ED----VYDEINLAA 579
            + +SATP    L        +  I  T    PP E    ++ V ED    + + I    
Sbjct: 702 VLTLSATPIPRTLHMSLVGARDMSIIET----PPAERFPVQSYVIEDNGAVLKNAIRREL 757

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
           ++G ++          + +   L E     R    H ++       ++ D   G++D+L+
Sbjct: 758 RRGGQVYFVYNRVESIDIMRRRLEELVPEARIQTGHGQMAEELLERVMVDFYEGRYDILL 817

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             +++  GLD+     + + +AD+ G  +    L Q  GR  R+ +     +        
Sbjct: 818 ATSIVENGLDVANANTIIVYNADRFGLSQ----LYQMRGRVGRSNHMAFAYFVY----QA 869

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + E   +R + ++   +  
Sbjct: 870 DKVLSEMAEKRLQAMKEFAELG 891



 Score = 41.2 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 74/247 (29%), Gaps = 40/247 (16%)

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
           T    GE   T   Y+  +  +  DE   T      + +     ++ L  +   +     
Sbjct: 228 TPEESGEA-ATFLSYLEGEGAVIFDEPLRTRESAQKLVKETPELRSKLFSWEELVAGAEG 286

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQV 568
           N       +  L    I  +                     P  LV   V+ +   + Q+
Sbjct: 287 NAT----FFAALMLQKIHGA--------------------EPDSLVSLAVQAVAPFQRQM 322

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + + +E          ++L V     A  L E   +  I       +            L
Sbjct: 323 DLLKNEARNWLSNKQHVVLLVGEAEKAASLRELFAKSRIPSAVAAGDEP----------L 372

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
                +++VG   L  G ++P   L+ + + D  G  R K  L Q   +  R  + + I 
Sbjct: 373 SDAYLNIVVGT--LSNGFELPGARLIVVSEKDIFG--RQKKKLAQKASKEERIAHFREIN 428

Query: 689 YADTITK 695
             D +  
Sbjct: 429 VGDYVVH 435



 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 48/137 (35%), Gaps = 14/137 (10%)

Query: 90  QTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHP 149
           + +  +  ++      L  L          G  ++P   W           F+    Y  
Sbjct: 502 KAKARARASVEDIADELIALYAKRR--AAKGFAFSPDTPWQRE--------FEDAFPYEE 551

Query: 150 SGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKIL 205
           + DQ  AI ++   +   E   +LL G  G GKT   +    +A+   +   V+ P  +L
Sbjct: 552 TPDQRRAIEEIKADMEKPEPMDRLLCGDVGFGKTEVAIRAAYKAVMDHKQVAVLVPTTVL 611

Query: 206 AAQLYSEFKNFFPHNAV 222
           A Q +  F   F    V
Sbjct: 612 AQQHFQTFSARFADFGV 628


>gi|259500996|ref|ZP_05743898.1| transcription-repair-coupling factor [Lactobacillus iners DSM
           13335]
 gi|302190555|ref|ZP_07266809.1| transcription-repair coupling factor [Lactobacillus iners AB-1]
 gi|259167690|gb|EEW52185.1| transcription-repair-coupling factor [Lactobacillus iners DSM
           13335]
          Length = 1110

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 101/233 (43%), Gaps = 17/233 (7%)

Query: 155 AAIAQLLKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           AA A L+  I +  + K  +L GV        + +++  +Q+P +++A ++  A Q+YS 
Sbjct: 8   AADANLVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSS 67

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
               F  N V +F             P  +T   + +  +      R  A   LL +   
Sbjct: 68  LVELFEENMVHFFPVE----------PLLET---QAAVSSLDELSQRLDAMSFLLTKQKG 114

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV+S+   + Y + +   +    + LK+       ++   LV+  YKR D+    G F +
Sbjct: 115 IVISTPQALQYPLPAAIKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFAL 174

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
            GD ++I+P ++    +R+  F ++I+ I  F  ++ +   ++  + I     
Sbjct: 175 RGDILDIYPINIA-YPYRIEFFDDEIDNIRTFNSVSQRTKDSLTEVVIEPADD 226



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    ++        P++          V +       +  
Sbjct: 712 VLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPIQTYVTEETPNIVREACLRELARNG 771

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I       +  +    YL +     R  Y+H  +   +  +I+      KFD+LV   +
Sbjct: 772 QIFFLHNKIQDIDQKVAYLSQLIPEARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTI 831

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+D+P    + + +AD  G L     L   IGR++R   +  +   D +
Sbjct: 832 IETGVDLPNVNTLLVENADTYG-LSQLYQLRGRIGRSSRLAYAYFLYKRDKV 882


>gi|225568648|ref|ZP_03777673.1| hypothetical protein CLOHYLEM_04726 [Clostridium hylemonae DSM
           15053]
 gi|225162576|gb|EEG75195.1| hypothetical protein CLOHYLEM_04726 [Clostridium hylemonae DSM
           15053]
          Length = 1113

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 102/255 (40%), Gaps = 20/255 (7%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
            R  +  + G   S KT  M  + +       +   ++  A Q+Y E++   P+      
Sbjct: 23  GRPGMIQISGCVNSQKTHMMYALSDGCHYKV-IACSSESKAKQIYEEYRFLDPN------ 75

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC-IYGI 284
                        P  D    +    + ++ + R    ++++      VV+S    +  +
Sbjct: 76  ---------TYLYPAKDLLFYQADLRSRELVKQRMEVIQAVISGQAMTVVTSFDGFMDAL 126

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
              E   +  + ++   +V+  ++   L    Y R+      G F V G  ++++P   E
Sbjct: 127 LPKEEIQRRTITVRNDSAVDLSKMEKELAGLGYDREVQIEGPGQFAVRGGILDVYPL-TE 185

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           ++  R+ ++G++++ I  F   T + I N+E + IY  S +        + + Y + E  
Sbjct: 186 ELPVRIELWGDEVDSIRTFDVGTQRSIENLEEVVIYPASEFPEEGEQRVSFLDYFERE-- 243

Query: 405 MRLIELEKEGRLLEA 419
             L+ L++  RLLE 
Sbjct: 244 RTLLFLDEPVRLLEK 258



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 77/226 (34%), Gaps = 21/226 (9%)

Query: 453 NPGEPPPTLFEYIPED-SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
             GE   +  +Y   + +LLF+DE    + +  G+       +    E G+      D  
Sbjct: 228 EEGEQRVSFLDYFERERTLLFLDEPVRLLEKGKGVEDEFLEAQKRRLESGY---DITDAE 284

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
              +     +R      S    + E+      +   +   T        +    +  + +
Sbjct: 285 AQLYHTDEIVRRMNGYSSIGFFALEMRSRGLDVRGSVSLMTKS------VNPYNSSFDML 338

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             ++    + G R++L   ++  A  L E L + N+   Y           E+ R++  G
Sbjct: 339 TQDLKRLKRNGYRVVLLSGSRTRARRLAEDLRDYNLSSYY---------SDEMDREVASG 389

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           +  ++     + EG + P      I + D  G ++ K       GR
Sbjct: 390 E--IMTAYGHVAEGYEYPMLKFTVIAETDIFGKVKKKKKRKSYEGR 433



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 30/173 (17%)

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           + +E    ++ E I R            S + QV  VY+ +   A+   RI      K +
Sbjct: 753 YVMEYNDEMVREAIEREC----------SRQGQVYYVYNRVEDIAEITARI-----QKLV 797

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            E          + V + H ++K  +  +I+ D   G+ DVLV   ++  GLDI     +
Sbjct: 798 PE----------VSVAFAHGQMKEHQLEKIMYDFINGEIDVLVSTTIIETGLDISNVNTM 847

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL----AIDE 703
            I DAD+ G L     L   +GR+ R   + ++   D + K +      AI E
Sbjct: 848 IIHDADRLG-LSQLYQLRGRVGRSNRMAYAFLLYRRDKMLKEVAEKRLAAIRE 899


>gi|325962661|ref|YP_004240567.1| transcription-repair coupling factor Mfd [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323468748|gb|ADX72433.1| transcription-repair coupling factor Mfd [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 1221

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 95/586 (16%), Positives = 184/586 (31%), Gaps = 93/586 (15%)

Query: 95  SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQP 154
                 PS+  L R + +D    +         +    +       +Q+     P+G + 
Sbjct: 5   GPSHHGPSLDGLRRALAADQTFARVRAEAARGFAVRGQD-------YQISA---PAGLRA 54

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
             +A++  GI                                + +      A  L +  +
Sbjct: 55  VLLAEMADGI---------------AAASAGEGPDGGGSGVVLAVTATGREAEDLAAALR 99

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH---SATRSLLERND 271
            + P + V  F S+ +    E   PR+DT   + S     + R+ H   SA   L     
Sbjct: 100 AYLPADCVAEFPSW-ETLPHERLSPRSDTVGRRLSV----LRRLAHPESSAAGPLRVVVA 154

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +       + G+G +         LK+G      +++ SL    Y R D+   RG F V
Sbjct: 155 PVRAVVQPVVAGLGELVPV-----TLKVGQEKPFGDVVRSLADAAYARVDMVTHRGEFAV 209

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN--VETIK---IYANSHYV 386
            G  I++FP   ED   RV  FG++++++  F     + + +  +              +
Sbjct: 210 RGGIIDVFPP-TEDHPIRVEFFGDEVDQMRWFAVADQRSLSSPGLHHPTELHAPPCREIL 268

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
                ++ A       LK +L                      LE +    + + +E+ +
Sbjct: 269 ITPSVMSRAAT-----LKSQLPAAADM----------------LEKIAGGIAVEGMESLA 307

Query: 447 RYL--TGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYG 501
             L  +     E        +P  S+  + E          ++           + A  G
Sbjct: 308 PVLVDSMVPFVEQ-------LPAGSISVIIEPEKVRTRAHDLAATNEEFLEAAWSTASDG 360

Query: 502 FRLP---SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
              P   S      L    +  L   T   S   G            E+++    +++  
Sbjct: 361 GAAPLDLSSQATAALHSASFRSL-TETRTSSLEHGVSWWSITSLAQDEELLPDIDVLNLH 419

Query: 559 V-EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
             E R  +  V ++ D I    +   RI++       A+ L E  +E +I    + S   
Sbjct: 420 AREPRGYQGDVAEMMDFIGSHVRDQWRIVVATEGPGPAQRLAELFHENDIPCARVDS--- 476

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                 +  + + G  +V     ++  G  +    L  + +AD  G
Sbjct: 477 ------LDHEPQAGIIEV--TTAVVGRGFVLDGLKLGLLTEADLLG 514



 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 53/150 (35%), Gaps = 13/150 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVEDVYDE-----INLA 578
            + +SATP    LE          IR T  +  P E R    T V    D+     I   
Sbjct: 821 VLAMSATPIPRTLEMSLTG-----IRETSTLATPPEERHPVLTYVGPYTDKQTSAAIRRE 875

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVL 636
             +  ++          E     + E     R    H ++      +II D    +FDVL
Sbjct: 876 LMREGQVFFVHNRVSTIERTAAKIRELVPEARVEVAHGKMSESRLEQIIVDFWEKRFDVL 935

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLR 666
           V   ++  GLDI     + +  ADK G  +
Sbjct: 936 VCTTIIETGLDISNANTLIVDGADKYGLSQ 965


>gi|117924949|ref|YP_865566.1| transcription-repair coupling factor [Magnetococcus sp. MC-1]
 gi|117608705|gb|ABK44160.1| transcription-repair coupling factor [Magnetococcus sp. MC-1]
          Length = 1198

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 86/526 (16%), Positives = 175/526 (33%), Gaps = 50/526 (9%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
           P  I +LL  +  R+   +L  +T    ++   ++      P +++      A  +  E 
Sbjct: 4   PITIQKLLDKLDGRKSPLILPELTTGASSWLAVELALTQPAPVVLVTGKVQRAESIAREL 63

Query: 214 KNFFPHNAVE-YFVSYYDYYQPEAYVPRTDTYIEKESSINEQI---DRMRHSATRSLLER 269
             F     V       ++    E   P      ++ ++++  I        S    L + 
Sbjct: 64  LFFGAQRGVHILPFPAWETLPFEPLSPYGPLVGDRLATLSRLIGLGKSGPISIGNELGDS 123

Query: 270 NDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
              ++ +  + +  +      ++      +GD +   +    L +  Y         G +
Sbjct: 124 RTVVITTPAAIMQRLMPKAVLARYGFAFSVGDQLNLPQFRELLTRSGYNPVSQVSEPGEY 183

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
              G  I++FP   ++   RV +FG+++E I  F P   + +  +  +++      +   
Sbjct: 184 AARGGLIDLFPPGRDE-PVRVELFGDEVESIRLFDPSNQRSLDPIPAVEVLPVREVILNA 242

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
            T++            R    E  G       + + I+ +          Q +E Y    
Sbjct: 243 DTISCF----------RTAYREVFGGYAAEDLIYKEISQNRTY-------QGMEQYLPLF 285

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA----EYGF--- 502
                     TLF+Y+P+ +L  ++       +       D HR A  A    E G+   
Sbjct: 286 YPDL-----DTLFDYLPKQTLFLMEPDVPNQIEERAREIEDQHRIAYQAGQGNEKGYDGS 340

Query: 503 --RLPSCMDNRPLRFEEWNCLRPTT-IVVSAT--PGSWELEQCQGIIVEQIIRPTGLVDP 557
             R  +       + E    L+P   ++ SAT  P           I E +         
Sbjct: 341 SMRCIARNTLYLDQRELTERLKPYPQLLQSATGKPALDLDLHPIPPIQEGVQGADHSQQD 400

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
             E ++  T ++ +  +I+L  ++  RI     T    E + E L +  + V    S   
Sbjct: 401 --EKKATATVMDRLCRQISLWQKEQRRIGFVSRTIGQRERMRELLTDHKVSVVDGSSWSA 458

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            L+       L LG            +G + P   +V I + +  G
Sbjct: 459 LLQADPRQPMLLLGDV---------SDGFEHPTRHVVLISEDNVFG 495



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 73/191 (38%), Gaps = 16/191 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQG 582
            + ++ATP    L      + +  I  +   D    IR+  T  +   V + I     +G
Sbjct: 790 ILTLTATPIPRTLNMAMAGVRDISIIASPPADRLA-IRTIITHYDKQQVREAILRELYRG 848

Query: 583 LRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++       +  E    ++ E + E  + V   H +++  +  +++ +     F++LV 
Sbjct: 849 GQVFYVHNQVQDIERKAQEIAELVPEARVGVA--HGQMRENQLEKVMMEFYRQTFNILVC 906

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +           + + 
Sbjct: 907 TTIVENGVDIPTANTIIIDRADKFGLAQ----LHQLRGRVGRSKHRAYAYMLVPHLRRLT 962

Query: 699 LAIDETTRRRE 709
                  +R E
Sbjct: 963 K---HAEKRLE 970


>gi|312876095|ref|ZP_07736083.1| transcription-repair coupling factor [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797081|gb|EFR13422.1| transcription-repair coupling factor [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 425

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 164/449 (36%), Gaps = 45/449 (10%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              L + +  +    ++ GV   GK   +  + E   + A+ +       A+L  E +  
Sbjct: 11  FKTLEEIVAKKSLPVVVTGVGEMGKALVVKSLCEKFNKKALFIT---TQRAKLEWERRFK 67

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              ++V            E   P    + +   S   +I++      +   +  D ++++
Sbjct: 68  NLFSSVVSLQ--------ERENPYVAPFAKSRDSEITRIEQ----FVKIFEDGFDVLILT 115

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + +       ++    +   L  G  ++ + L+  L+   Y+R      +G F   G  +
Sbjct: 116 AQNLFEKYTDLKFDCIL---LTEGLDIQLETLIGKLLTFGYERVKTVEKKGQFSQKGGIV 172

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +I+P        R+  FG+ I+ I  F   T +    +++IKIY    +   +   +  +
Sbjct: 173 DIYPV-ASTYPVRIEFFGDTIDTIRLFDVETQKSFEKIDSIKIYKAIEWDL-QEDFSEGL 230

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           K+IK++ K    +++ + +    + LE+     +E +        +E    Y       +
Sbjct: 231 KHIKDDYK----KMKSKLKEESRKNLEEIFKEVIEGIRL-----DVERLYPYYY-----Q 276

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              ++ +   E  L+FVDE       +    +      + L E GF LP   D      +
Sbjct: 277 QFLSVIDIFSE-CLIFVDEYSQVYNSLKAFEQEMREMFSDLLEKGFVLPRMADCYYTVDK 335

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
                  T I+ +      E+E          +R     +   E+ +   Q E + D++ 
Sbjct: 336 ILQKFSSTIILQTFASSIKEIE----------LREIISFNFFRELPTYNAQKEVLIDDLK 385

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYER 605
               +   I +   ++   EDL E L ++
Sbjct: 386 YYMSKDYTINIFTGSRTSLEDLEEALLKK 414


>gi|121611273|ref|YP_999080.1| transcription-repair coupling factor [Verminephrobacter eiseniae
           EF01-2]
 gi|121555913|gb|ABM60062.1| transcription-repair coupling factor [Verminephrobacter eiseniae
           EF01-2]
          Length = 1174

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/454 (16%), Positives = 153/454 (33%), Gaps = 68/454 (14%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           S  K   L    GS  +  +A++ E      R   ++  +   A +L  EF  F P    
Sbjct: 24  SPGKRFTLARPAGSADSLLLARLAERERAAGRATAIVVADASDAQRLIDEFAFFAPALRC 83

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
             F  + +    +++ P  D   E+ +++  +I +           + D ++V + + +Y
Sbjct: 84  ALFPDW-ETLPYDSFSPHQDLISERLATL-WRIRQ----------GQADVVLVPATTALY 131

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +      +       +G  ++  +  + L    Y      +  G + V G  I++FP  
Sbjct: 132 RLAPPAFLAGYTFHFALGQKLDAAQFKAQLTLAGYSHVSQVVSPGEYAVRGGLIDLFPMG 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
              V +RV +F ++I+ I  F P   + +  V  +++     +                 
Sbjct: 192 AS-VPYRVDLFDDEIDSIRSFDPDNQRSLHPVPEVRLLPGREFPMDE------------- 237

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
              R     +   L+E    + RI  D   +    +   IE Y          +   ++F
Sbjct: 238 -AARAKFRSRWRELIEGDPTKSRIYKD---MGNGVATAGIEYYLPLFF-----DDTASMF 288

Query: 463 EYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP--------LR 514
           +Y+   +++ +      + Q       +           FRL S    RP        L 
Sbjct: 289 DYLGSAAIVVLHGDLEPVFQRFWQDTKER----------FRLTSADPERPALPPEALFLS 338

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            E++         +S  PG+ E                 L D  V +R+A   +  +   
Sbjct: 339 IEQFYTRANAYAQLSLRPGAPEQAGDGAF--------CRLGDLSV-LRAADDPLARLQAH 389

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           I    +   R+LL   +    E L ++L    I 
Sbjct: 390 IRSTPR---RVLLLAESAGRRESLLDFLRAAQID 420



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 19/134 (14%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            QV  +++E+     +  R             L E L E  I V   H ++       ++
Sbjct: 833 GQVYFLHNEVETIEHRRQR-------------LEEILPEARIAVA--HGQMPERALERVM 877

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RD    ++++L+   ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +  
Sbjct: 878 RDFVAQRYNLLLCSTIIETGIDVPTANTILMSRADKFGLAQ----LHQLRGRVGRSHHQA 933

Query: 686 VILYADTITKSIQL 699
                   T+ +  
Sbjct: 934 YAYLMVPDTEGLTR 947


>gi|325981304|ref|YP_004293706.1| transcription-repair coupling factor [Nitrosomonas sp. AL212]
 gi|325530823|gb|ADZ25544.1| transcription-repair coupling factor [Nitrosomonas sp. AL212]
          Length = 1154

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 150/435 (34%), Gaps = 49/435 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +A+V +   RP  ++  + + A +L  E   F P                 
Sbjct: 22  LDGSSDALFLAQVAQQA-RPVTIITAHALDAQRLLEEIPFFAPELRTHL----------- 69

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMI 294
             +P  +T      S +  +   R +    ++     ++++ ++  +Y +   E  +   
Sbjct: 70  --LPDWETLPYDVFSPHHDLVSERLATLYQVMHGVCDVLIAPLTTALYRMLPREYLAAHT 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             LK G++++   L S L    Y         G + V G  I++FP     + +R+ +  
Sbjct: 128 FFLKQGETLDVPGLRSQLTLAGYSHVTQVFSPGEYSVRGGLIDLFPM-GSPLPYRIDLMD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
            +I+ I  F   T + I  V+ I++     +              +++ +         G
Sbjct: 187 KEIDTIRTFDVDTQRSIYPVKEIRLLPAREFPLDEAGRTCFRGNFRDKFE---------G 237

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
              + Q          + +    +   IE Y          +   TLF+Y+PE++LL + 
Sbjct: 238 DPSKKQ--------IYKDISKGLTPAGIEYYLPLFF-----DQTATLFDYLPENTLLCL- 283

Query: 475 ESHVTIPQISGMYRGDFHRKATLA-EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
             H   P I   +R    R   L  +    L   ++        +  L+P          
Sbjct: 284 -HHDVRPVIEEFWRDTQSRFQLLRGDLDRPLLPPLELFLSGDSFFGTLKPY--------A 334

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
             E+            + T  +      R A   +E +   +   ++ G R+LL   +  
Sbjct: 335 RIEILSTAQDSKLTAPKNTLPLPSIQVNRHAENPLEKLAIFLTHFSRSGGRVLLLAESMG 394

Query: 594 MAEDLTEYLYERNIR 608
             E + EYL++  + 
Sbjct: 395 RRELIAEYLHQYGLH 409



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 71/178 (39%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L    +G+    II         +    +   +  + +      ++G 
Sbjct: 763 VLTLTATPIPRTLAMSLEGLRDFSIIATAPQRRLAIRTFVSGFSMGIIREACLRELKRGG 822

Query: 584 RILLT---VLTKR-MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +I      V T + M E LT  L E  I +   H ++   E   ++RD    +F++L+  
Sbjct: 823 QIYFLHNEVSTIQLMLEKLTGLLPEARINIA--HGQMPERELEHVMRDFYQQRFNILLCT 880

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I +A K G  +    L Q  GR  R+ +           +++
Sbjct: 881 TIIETGIDIPSANTILINNAHKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPEEAL 934


>gi|167759752|ref|ZP_02431879.1| hypothetical protein CLOSCI_02113 [Clostridium scindens ATCC 35704]
 gi|167662619|gb|EDS06749.1| hypothetical protein CLOSCI_02113 [Clostridium scindens ATCC 35704]
          Length = 111

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/108 (55%), Positives = 76/108 (70%)

Query: 121 KIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSG 180
           K+W       + N   ++  F++Q  Y P+GDQP AIA+L+KG     + Q LLGVTGSG
Sbjct: 4   KMWLILNVSKVTNGGFNMPEFKLQAPYQPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSG 63

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           KTFTMA VI+ +Q+P +V+A NK LAAQLY EFK  FP+NAVEYFVSY
Sbjct: 64  KTFTMANVIQELQKPTLVIAHNKTLAAQLYGEFKEMFPNNAVEYFVSY 111


>gi|330881518|gb|EGH15667.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 597

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 126/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGATLSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E     +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+++P+D+ +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDFLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304


>gi|67921537|ref|ZP_00515055.1| Transcription-repair coupling factor [Crocosphaera watsonii WH
           8501]
 gi|67856649|gb|EAM51890.1| Transcription-repair coupling factor [Crocosphaera watsonii WH
           8501]
          Length = 1160

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 93/638 (14%), Positives = 206/638 (32%), Gaps = 92/638 (14%)

Query: 160 LLKGIHSREKVQLLLGVTGSG---KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           L K +  + K    LG+ G     K    + + ++ +   +V+      A +  ++ +  
Sbjct: 15  LTKELLGKLKENNELGLKGINRLPKGLVSSALAQSKEDNLLVICATLEEAGRWTAQLEIM 74

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                  Y  S    Y+P    P ++    +   ++  ++R++          N+  +V+
Sbjct: 75  GWQTVNFYPTSEASPYEP--LNPESEMVWGQMQVLSN-LNRLKD-------NNNNYAIVT 124

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +   +   +   + +    + ++   + + KE    LV+  Y+R ++  + G +   GD 
Sbjct: 125 TEKALQPHLIPPDIFHDYCLNIQEEMTEKSKEFDGKLVRLGYERVNLVEVEGQWSRRGDI 184

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++IFP   E +  R+  FG+++E+I EF P T + +  +E I +            +   
Sbjct: 185 VDIFPVSSE-IPIRLEWFGDELEKIREFDPSTQRSLDKLEQILLTPIGFNTIIANKIKEN 243

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              + + L  +                      + E ++       +    R+L      
Sbjct: 244 NYNLDDYLSEQ----------------------EKEGIDNYNYPPGM---QRFLGI--AF 276

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           E P ++ +Y+  ++L   DE                            LP    +    F
Sbjct: 277 EEPSSILDYLEPNTLCVFDEIEQCRSHSDRWLDYIEE---QWENNEKSLPKVHRSFDDSF 333

Query: 516 EEWNCLRPTTIV-VSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQVEDV 571
           +    L    +  +S       L+     +     Q  +   ++    EI S  +  +  
Sbjct: 334 QLAEKLPKLYLYELSEVNNKNALDLSSRPLPTTPHQFAKLAEILRGKREIYSGMSLNKYA 393

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK-TLERIEIIRDLRL 630
              I+    Q  R +               L E + + +++ +           I+D   
Sbjct: 394 TWLIS---AQPSRTV-------------SLLQEHDCQAQFIPNPRDYPAINKSHIQD--- 434

Query: 631 GKFDVLVGINLLR-EGLDIPECGLVAILDADKEGF-LRSKTSLIQTIGRAAR-------- 680
                L    L   EG  +P   +V + D +  G  + +    I+   RA          
Sbjct: 435 -TAIALKYSGLAELEGFILPTFRIVVVTDKEFFGQHVLATAGYIRKRRRATSKKVDLQQL 493

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +    V+  +  I K ++L    T      Q E           +     +  D +    
Sbjct: 494 HQGDYVVHKSHGIGKFLKLESLATREYLVVQYE---------DGILRIPADSFDSVSRYR 544

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
                 S   +   ++ K  +   + +RK +   A +L
Sbjct: 545 HTE---SKPPKLHKMTGKTWQKSKQKVRKNIRKLAVDL 579



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      I E  +I        P++   +R   + V + I     +G 
Sbjct: 763 VLTLSATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSRYNPDAVRNAIRNELDRGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++   V      E++   +       R    H ++   E    +     G  D+LV   +
Sbjct: 823 QVFYVVPRVEGIEEVAAQIKRMVPSARMAIGHGQMDVNELEMTMLGFNNGDADILVCTTI 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + + DA K G  +    L   +GRA    ++ ++          +  +
Sbjct: 883 VESGLDIPRVNTIIVEDAQKFGLAQ-LYQLRGRVGRAGIQAHAWLLY-------PSKSEL 934

Query: 702 DETTRRR 708
            ET R+R
Sbjct: 935 TETARKR 941



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 146 DYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVIEAM----QRPAIVMA 200
            Y P+ DQ  AI ++   +   R   +L+ G  G GKT    + I        +  + +A
Sbjct: 609 PYQPTPDQLKAIQEVKIDLESDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGHKQVVFLA 668

Query: 201 PNKILAAQLYSEFKNFFPH 219
           P  IL  Q Y   K  F  
Sbjct: 669 PTTILTQQHYHTLKERFAP 687



 Score = 38.9 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 17/150 (11%)

Query: 531 TPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSAR---------TQVEDVYDEINLAA 579
           TP   ELE         +Q+     +       R             + E     I  A 
Sbjct: 598 TPWQQELEDSFPYQPTPDQLKAIQEVKIDLESDRPMDRLVCGDVGFGKTEVAVRAIFKAV 657

Query: 580 QQGLRILLT-----VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             G + ++      +LT++    L E      I +  ++      E+ EII+ L  G+ D
Sbjct: 658 TSGHKQVVFLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTASEKKEIIQRLSTGELD 717

Query: 635 VLVGI-NLLREGLDIPECGLVAILDADKEG 663
           ++VG   LL + +   + GL+ I +  + G
Sbjct: 718 IVVGTQQLLGKSVKFNDLGLLVIDEEQRFG 747


>gi|269219241|ref|ZP_06163095.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211388|gb|EEZ77728.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 1194

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 106/272 (38%), Gaps = 19/272 (6%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207
            P G  P  +A L+ G H         G  GS    + A+         + + P    A 
Sbjct: 31  MPRGLVPPVLA-LMGGAHGPGDAHAPEGPHGSNAARSHAE-----PPLVVAVTPTGREAD 84

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           +L    + + P   VE F ++ +    E   PR+DT   +  +      R+ H    + L
Sbjct: 85  ELVGALRAYLPEETVELFPAW-ETLPHERLSPRSDTVARRILAQ----RRLAHPEDFAPL 139

Query: 268 ERNDCIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
                 V + +  I  G+G ++        +++GD V+ + L  +LV   Y R D+   R
Sbjct: 140 RVLVMPVRALLQPIAEGLGELKPVR-----VRMGDVVDLESLERALVDAAYSRVDMVEGR 194

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           G F V G  I+IFP   +    R+ +FG+D+EEI  F     + +   + +        +
Sbjct: 195 GQFAVRGGLIDIFPP-TDPRPSRIELFGDDVEEIRVFSVADQRSLEARDEVYAPPCREIL 253

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLE 418
                   A + +  EL   +  L+K    L 
Sbjct: 254 LTADVRARARELV-AELPGAVDMLDKIAEGLA 284



 Score = 46.2 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 68/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     + E     T    PP E     T V     + V   I    
Sbjct: 789 VLSMSATPIPRTLEMAVTGVREMSTLAT----PPEERHPVLTYVGPKDNKQVLAAIRREL 844

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +I            +   + E     R    H ++   +   +I+     + D+LV
Sbjct: 845 LRDGQIFYVHNRTGDMARVAAQIGELVPEARVGVAHGKMSEHQLELVIQAFWDKEIDILV 904

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + + DA++ G  +    L Q  GR  R        +     K++
Sbjct: 905 CTTIVETGLDISNANTLIVEDAERFGLSQ----LHQLRGRVGRGRERAYAYFLYNPDKAM 960

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
                ET   R + +  N +  
Sbjct: 961 ----TETALERLRTIAANAELG 978


>gi|91788579|ref|YP_549531.1| transcription-repair coupling factor [Polaromonas sp. JS666]
 gi|91697804|gb|ABE44633.1| transcription-repair coupling factor [Polaromonas sp. JS666]
          Length = 1201

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/516 (14%), Positives = 170/516 (32%), Gaps = 76/516 (14%)

Query: 176 VTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
             GS     +A++ +      +   ++  +   A +L  E   F P      F  + +  
Sbjct: 17  PPGSADALLLARLGQREQAAGKLTAIITSDATTAQRLMDEMAFFAPDLRYALFPDW-ETL 75

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
             + + P  D   E+ +++  +I   R   T +     D ++V + + +Y +      + 
Sbjct: 76  PYDTFSPHQDLISERLATL-WRIS-QRDKDTGA-----DVVIVPATTALYRLAPPSFLAG 128

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
              + K+   +++  L + L    Y      +  G + V G  I++FP     V +RV +
Sbjct: 129 YTFEFKVKQKLDESRLKAQLTLAGYSHVTQVVGPGEYAVRGGLIDLFPM-GSLVPFRVDL 187

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           F ++I+ I  F P + + +  V  +++     +              + + + R  EL  
Sbjct: 188 FDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDDA--------RAKFRKRWRELLD 239

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
                         +   + +    +   IE Y          +   T+F+Y+  D+ + 
Sbjct: 240 GDPTK---------SRIYKDMGNGVATSGIEYYLPLFF-----DETATVFDYLGSDATVV 285

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFR--LPSCMDNRPLRFEEWNCLRP---TTIV 527
           +       P     ++    R   + +   R  LP   ++  L  E++           +
Sbjct: 286 LHGD--LEPAFQRFWQDTKDRYRLVRDAPDRPALPP--ESLFLGAEQFYARANGYAQLAL 341

Query: 528 VSATPGSWEL----------------EQCQGIIVEQII---RPTGLVDPPVEIRSARTQV 568
            + +P    L                E+ +G ++   +   R  G      +   A   V
Sbjct: 342 KAGSPHPNPLPGGEGIKGDLLPLQGGEESKGDLLPLPLGEGRGEGSPYTEFDSLPAMAVV 401

Query: 569 ----EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
               + +            R+L+   +    E L ++L   N+          +      
Sbjct: 402 RGAEDPLARFKGHVRNTAHRVLVLAESDGRRESLLDFLRASNV----------SPPAFNS 451

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           ++D +     + +    L  G    E G+  I + +
Sbjct: 452 LQDFQTSDEKLGIATAALNTGFSWLEEGIDFITETE 487



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 85/198 (42%), Gaps = 20/198 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +RS    V  + + +    ++
Sbjct: 800 VLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRSENNGV--IREAVLRELKR 857

Query: 582 GLRILLT---VLT-KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T +   E L E L E  I V   H ++   E   +++D    ++++L+
Sbjct: 858 GGQVYFLHNEVETIQNRREKLEEILPEARIAVA--HGQMPERELERVMKDFVAQRYNLLL 915

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +     YA  +   I
Sbjct: 916 CSTIIETGIDVPSANTIVMSRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLMVPDI 968

Query: 698 QLAIDETTRRRE--KQLE 713
           +    + ++R E  +Q+E
Sbjct: 969 EGLTKQASQRLEAIQQME 986


>gi|270159982|ref|ZP_06188638.1| transcription-repair coupling factor [Legionella longbeachae
           D-4968]
 gi|289165275|ref|YP_003455413.1| Transcription-repair coupling factor [Legionella longbeachae
           NSW150]
 gi|269988321|gb|EEZ94576.1| transcription-repair coupling factor [Legionella longbeachae
           D-4968]
 gi|288858448|emb|CBJ12326.1| Transcription-repair coupling factor [Legionella longbeachae
           NSW150]
          Length = 1146

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/322 (16%), Positives = 112/322 (34%), Gaps = 36/322 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +A+  +      +++A + + A QL +E            F       Q  
Sbjct: 20  LHGSSLALALAEYCQQTSGIKLLIAQDNLSANQLQAEL----------TFFLNTASSQEL 69

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
            + P  +T    + S ++ I   R  A   + +  D I+++S S +   +   E  +Q  
Sbjct: 70  LFFPDWETLPYDQFSPHQDIISERLYALSRIQQVTDAIIITSASTLMHRLCPPEFLNQHA 129

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + LK G  ++     + L +  Y   +  +  G + + G  I+++P     + +R+ +F 
Sbjct: 130 LMLKEGQKLDLNAFRNQLQQSGYHCVNKVLEHGEYALRGSIIDVYPM-GSGLPFRIELFD 188

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE + EF   T + I  ++ I +     +              + +LK R    E   
Sbjct: 189 DEIESLREFDTDTQRTIEKIKEINVLPAREFPLNE----------QSQLKFRRAFRELFS 238

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                           E +        IE Y          +   T F+Y+P  + +   
Sbjct: 239 GNPSQ-------CPIYEAISEGQFPSGIEYYLPLFF-----DKTVTFFDYLPSTAKVCFI 286

Query: 475 ESHVTIPQISGMYRGDFHRKAT 496
           E+     +    +     R   
Sbjct: 287 ENIQ--DKAEQFWLELNERFEQ 306



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      I +  +  T            + + + +  + I     +G 
Sbjct: 753 ILSMTATPIPRTLNMAMAGIRDISLMTTPPAKRLAIKTFWQEKKDPIVREAILREILRGG 812

Query: 584 RILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T  R+ EDL   + E  IR    H +++  E   ++ D    +F+VLV  
Sbjct: 813 QVFFLHNNVETIERICEDLQSLVPEAKIRSA--HGQMRERELERVMSDFYHHRFNVLVCT 870

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +           KS+
Sbjct: 871 TIIETGIDIPTANTIIIDRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNQKSL 924



 Score = 42.4 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            +  + DQ  AI Q++K +  S+   +L+ G  G GKT      A V     +   V+ P
Sbjct: 600 PFTETPDQLNAIEQIIKDMESSKPMDRLICGDVGFGKTEVAMRAAFVAVQSNKQVCVLVP 659

Query: 202 NKILAAQLYSEFKNFFPH 219
             +LA Q +  F++ F  
Sbjct: 660 TTLLAGQHFESFRDRFAD 677


>gi|91793030|ref|YP_562681.1| transcription-repair coupling factor [Shewanella denitrificans
           OS217]
 gi|91715032|gb|ABE54958.1| transcription-repair coupling factor [Shewanella denitrificans
           OS217]
          Length = 1179

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 131/333 (39%), Gaps = 36/333 (10%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +   ++ Q L+ + G  ++ ++A++I A +  ++++  +   A  L +E      ++ V 
Sbjct: 12  VKKGQQTQRLVTLGGLSQSLSLAQLILANKGTSLIVTHDTPTAMLLETELHYLLANHDVN 71

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
                          P  +T      S ++ +   R      L       V+  ++ +  
Sbjct: 72  LC-----------LFPDRETLPYDSFSPHQDLISQRLETLAQLGNLGHNAVIVPINTLMV 120

Query: 284 IGSVESYSQM-IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
               +SY    ++ LK GD+   + +   LV   Y   +     G F + G  ++IFP+ 
Sbjct: 121 RLPPQSYLSANVMVLKKGDTYALQTVRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPTG 180

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            +    R+ +F ++IE I  F   T +    V+ I++     +     T + A++  ++ 
Sbjct: 181 CQ-QPLRIELFDDEIESIRHFDVETQRSEVAVDAIRMLPAKEFA----TDSAAIEGFRQR 235

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            + R   + K     EA+ + Q ++ +L           IENY          +   +LF
Sbjct: 236 YRRRFEVISK-----EAESVYQLVSRNL-------MPAGIENYLPLFF-----DDTASLF 278

Query: 463 EYIPEDSLLFV--DESHVTIPQISGMYRGDFHR 493
           +Y+PE++ L    D        ++ ++     R
Sbjct: 279 DYLPENTQLITLGDIDKACANHLTEIHHRYEDR 311



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 15/189 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+          + + +     +G 
Sbjct: 780 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYHQATIREALLREILRGG 839

Query: 584 RILLT---VLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T     +DL + L E  +     H +++  +  +++ D    +F+VLV  
Sbjct: 840 QVYYLHNNVETIEKCAQDLRDLLPEARVVTG--HGQMRERDLEKVMADFYHQRFNVLVCT 897

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  IT  I+L
Sbjct: 898 TIIETGIDVPSANTIVIDRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYMITPPIKL 950

Query: 700 AIDETTRRR 708
            I    R+R
Sbjct: 951 -ISTDARKR 958


>gi|119472828|ref|ZP_01614752.1| transcription-repair ATP-dependent coupling factor [Alteromonadales
           bacterium TW-7]
 gi|119444723|gb|EAW26029.1| transcription-repair ATP-dependent coupling factor [Alteromonadales
           bacterium TW-7]
          Length = 1157

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 115/298 (38%), Gaps = 37/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           ++GSG +  +A+ ++  +   +++ P+   A +L +E +   P+N V  F          
Sbjct: 24  LSGSGLSIAIAEGVKQQENLVLIVTPDTPSALRLETELEYLLPNNPVMVF---------- 73

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMI 294
              P  +T      S ++ I   R +   +L +    +++  VS +    +  S+     
Sbjct: 74  ---PDWETLPYDHFSPHQDIISARLATLNTLKKEQQSVLIVPVSTLMLRTAPASFIYGST 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           +  K+GD ++      +L +  Y      +  G + + G  ++++P       +R+  F 
Sbjct: 131 INFKVGDKLDTHNFRQNLEQAGYLNVQQVMEHGEYAIRGSIVDLYPM-GSPHPFRLDFFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++++ I  F   T +    V+ I++     + T    +             R+   EK G
Sbjct: 190 DELDTIRLFDVETQRSDEKVDKIELLPAHEFPTNESDIERF----------RIGYREKFG 239

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
              E   +  +++              IE Y          E   T+F+Y+P+++ + 
Sbjct: 240 ASSEQDSVYMQVSK-------GNWPAGIEYYMPLFF-----ESLATIFDYLPDNTTVM 285



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 68/178 (38%), Gaps = 7/178 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+    +  VE + + I    ++G 
Sbjct: 760 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRQRDVELIREAILREIKRGG 819

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E + + L E       +  H +++  E  +I+      K++V+V   +
Sbjct: 820 QVYFLHNNVETIERVAQELSEWVPEANVITAHGQMREQELEQIMTQFYHQKYNVIVCTTI 879

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+D+P    + +  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 880 IETGIDVPTANTIIMDRADKLGLAQ----LHQLRGRVGRSHHQAYAYLLTGDPKALSK 933



 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            +  + DQ  AI  +L  + S++   +L+ G  G GKT      A V     +   ++ P
Sbjct: 607 PFEETDDQRNAIEAVLGDMQSKQAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVP 666

Query: 202 NKILAAQLYSEFKNFFPHNAVE 223
             +LA Q Y  FK+ F    +E
Sbjct: 667 TTLLAQQHYENFKDRFADFPIE 688


>gi|330982230|gb|EGH80333.1| transcription-repair coupling factor [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 1150

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 126/323 (39%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGATLSLAIAEAASAAKRFTLLLPADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E     +VV   + ++ +   +      
Sbjct: 71  ---PDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  VE++++     +   +  +       K   + R        
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRF----KARFRERFD------ 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R +   + L +  +   IE Y          E   TLF+Y+P+D+ +F  
Sbjct: 237 -------VDFRRSPIFQDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF-- 282

Query: 475 ESHVTIPQISGMYRGD-FHRKAT 496
            S   I Q +  +  D  +R   
Sbjct: 283 -SLPGIEQAAENFWNDVRNRYEE 304



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V           + + +     +G 
Sbjct: 754 ILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKPTIKEALLRELLRGG 813

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +  E    DL E + E  I +   H +++  E  +++ D    +F+VL+  
Sbjct: 814 QVYYLHNDVKTIEKCAADLAELVPEARIGIG--HGQMRERELEQVMSDFYHKRFNVLIAS 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +              + 
Sbjct: 872 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPP----RK 923

Query: 700 AIDETTRRREKQLEHNKKHN 719
            I     +R + + + +   
Sbjct: 924 QITHDAEKRLEAIANTQDLG 943


>gi|167758784|ref|ZP_02430911.1| hypothetical protein CLOSCI_01126 [Clostridium scindens ATCC 35704]
 gi|167663524|gb|EDS07654.1| hypothetical protein CLOSCI_01126 [Clostridium scindens ATCC 35704]
          Length = 1114

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 104/266 (39%), Gaps = 20/266 (7%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A   ++ + I     +  + G   S KT  M  + +       +   ++  A Q+Y E++
Sbjct: 12  AEFEEISRDIRKGAGMIRVCGCVNSQKTHMMYALSDGCNYRV-IACSSESKAKQVYEEYR 70

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
              P+  +                P  D    +    ++++   R    +++       V
Sbjct: 71  FLDPNTHLY---------------PAKDLLFYQADLRSKELVSQRMEVIQAVAAGEKATV 115

Query: 275 VSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           ++S       +   +   +  V++    +   +E+ S LV   Y R+      G F V G
Sbjct: 116 ITSFDAFMDTLLPKDVIVEKTVRIANDSTFHLEEMQSRLVALGYDREVQIEAPGQFAVRG 175

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++++P   E++  R+ ++G++++ I  F   T + I N+E + I     +        
Sbjct: 176 GILDVYPL-TEELPIRIELWGDEVDSIRTFDVETQRSIENLEEVSICPAVEFPQEGEKGV 234

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEA 419
           + + Y    ++  ++ L++  RL+E 
Sbjct: 235 SFLDYFP--MEETILFLDEPVRLIEK 258



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP-PVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      I +  +      D  P++        E V + I   + +  
Sbjct: 715 VLTLTATPIPRTLHMSLIGIRDMSVLEEAPNDRMPIQTYVMEYNDEMVREAIERESGRQG 774

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++           ++T ++ +   ++ V Y H ++K  +   I+ D   G+ DVLV   +
Sbjct: 775 QVYYVYNRVEDIAEITGHIQKLVPDVTVEYAHGQMKEHQLERIMYDFINGEIDVLVSTTI 834

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-- 699
           +  GLDI     + I DAD  G L     L   +GR+ R   + ++   D + + +    
Sbjct: 835 IETGLDISNVNTMIIHDADHLG-LSQLYQLRGRVGRSNRMAYAFLLYRRDKLLREVAEKR 893

Query: 700 --AIDE 703
             AI E
Sbjct: 894 LAAIRE 899


>gi|153835235|ref|ZP_01987902.1| transcription-repair coupling factor [Vibrio harveyi HY01]
 gi|148868273|gb|EDL67407.1| transcription-repair coupling factor [Vibrio harveyi HY01]
          Length = 1153

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 97/531 (18%), Positives = 193/531 (36%), Gaps = 77/531 (14%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
              +K Q L  + G+     +A++ +     ++++ P+  +A +L +E    F    V  
Sbjct: 14  ERGDKKQ-LGNLPGAALAMAIAELAKQHSSHSLLVVPDPQIALKLQAEI-EQFTDQPVSL 71

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
           F  + +    + + P  +        I+++I R+    T+S    N   +V   + +   
Sbjct: 72  FPDW-ETLPYDNFSPHQEI-------ISDRIARLYQLPTQS----NGVTIVPVSTVLQRK 119

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
              +   Q  + +K GD     +L   L    Y+  D     G +   G  +++FP    
Sbjct: 120 SPRDFLLQHTLMVKTGDQFSLDKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSS 179

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           D  +R+  F ++I+ I  F P   + I +++ I++     +    PT   A++  +   +
Sbjct: 180 D-PYRIDFFDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEF----PTTKAAIEDFRTRWR 234

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            +           EA+R  + I      +        IE +          +   TLF+Y
Sbjct: 235 SQ----------FEARREPESIYM---QVTKGTWPAGIEYWQPLFF-----DHTETLFDY 276

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +PEDS L       T   I        +      +Y +        RPL       L P 
Sbjct: 277 LPEDSQLI------TYGDIEAAVDTFLND----VDYRYDQKKIDPMRPL-------LAPH 319

Query: 525 TIVVSATPGSWELEQ--CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
            + +         +Q     + +E+I++  G  + PV+  +     +   + +    Q  
Sbjct: 320 ELWLKKDELFTHFKQLPQAQLNLEKIVKRAGRQNLPVQSLAELGVQQQNKEPLARLRQFS 379

Query: 583 L----RILLTVLTKRMAEDLTEYLYERNIRVR-YMHSEVKTLERIEIIRDLRLGKFDVLV 637
                +I+ +V ++   E LTE L  + I+VR  +H  +           L  G    L+
Sbjct: 380 EQFTGKIIFSVESEGRREALTELL--QGIKVRPVVHGSLYQ--------ALDSGDRFSLI 429

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
                  G    +     I ++D  G       +IQ   +  + VNS  ++
Sbjct: 430 L-GAAEHGFIHDDLNFALICESDLLG-----DRVIQRRRKDKKAVNSDTVI 474



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 14/186 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q ED  V + +     +G
Sbjct: 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQREDSVVREAVLREIMRG 812

Query: 583 LRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++      V T  + AEDL + + E  + V   H +++  E   I+ D    +F++LV 
Sbjct: 813 GQVYFLHNQVETIEKTAEDLQKLIPEARVTVA--HGQMRERELERIMNDFYHQRFNLLVC 870

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I 
Sbjct: 871 TTIIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAIT 926

Query: 699 L-AIDE 703
             AI  
Sbjct: 927 KDAIKR 932


>gi|94267602|ref|ZP_01290937.1| Transcription factor CarD [delta proteobacterium MLMS-1]
 gi|93451931|gb|EAT02653.1| Transcription factor CarD [delta proteobacterium MLMS-1]
          Length = 613

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/463 (16%), Positives = 143/463 (30%), Gaps = 54/463 (11%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ---RPAIVMAPNKILAAQLYSEFK 214
             L++ +   ++   + GV G      +A ++  +    RP + + P+   A QL ++  
Sbjct: 2   DDLIRSLGQCKEPLDIYGVRGGA----VAWLVGRLGGLARPLLCVCPDDDQARQLATDLA 57

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            F     V Y       Y      P +                               +V
Sbjct: 58  LFSDLPVVHYPDLEVAPYAALRPDPGSRAARLAALFAISD------------AASPFIMV 105

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
            +  +        E    +   +  G+  +  EL   L    Y+R  +    G + + G 
Sbjct: 106 AAGRALSARTLPPERLQALAELVIRGEECDAAELTGRLAAGGYERVALVQEVGEYSIRGG 165

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH--YVTPRPTL 392
            I+IFP   ++   R+  FG+ +EEI  F P++ + +  +    +   S   Y       
Sbjct: 166 IIDIFPP-GQEYPLRLDFFGDTVEEIRRFDPISQRSVGELAEAILLPASDCLYPAADSPA 224

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
             A+     +    L    +  R LE            E L         + +   L   
Sbjct: 225 QQALLERHRQWAASLQWDRQPSRQLE------------ECLRQHRPFAGDQFFLPLL--- 269

Query: 453 NPGEPPPTL--FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF-RLPSCMD 509
                P  L    Y+P ++L+   +    +  ++            L       LP   D
Sbjct: 270 ----EPAALSPLAYLPANTLIIQVDHPRLLQNLALHRERIASNYQELTATAQPALPP--D 323

Query: 510 NRPLRFEE----WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565
              L  E+    +       I   A PG  + ++   I     +     +D     R   
Sbjct: 324 ELFLSAEQLHGHFEQAAGARIFPLA-PGEADGQRVFQIEAGNHVLLKQQLDLK---RREE 379

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
             +  +  +I    QQG R+LL   T R A  + E L    + 
Sbjct: 380 GLLAPLAQQIKQWRQQGERVLLACRTPRHAAKMAELLAGHGVT 422


>gi|282896750|ref|ZP_06304758.1| Transcription-repair coupling factor [Raphidiopsis brookii D9]
 gi|281198468|gb|EFA73356.1| Transcription-repair coupling factor [Raphidiopsis brookii D9]
          Length = 1202

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 83/523 (15%), Positives = 173/523 (33%), Gaps = 74/523 (14%)

Query: 160 LLKGIHSREKVQLLLGVTGSG---KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           L   ++++ K    LG+ G     K    + +     R   ++      A + Y++ +  
Sbjct: 15  LTTELNNQLKKHQQLGLNGISRLPKNLIASALANQESRDLCIICATLEEAGRFYAQLETM 74

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
             +    Y  S    YQP  + P T+           Q+  +    + S  +     +++
Sbjct: 75  GWNTVHFYPTSEASPYQP--FDPETELSWG-------QMQVLADLVSNS--DHKSMALIT 123

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           ++  +   +   E +    + L+   +   ++    +    Y+R  +    G +   GD 
Sbjct: 124 TIGALQPHLPPREHFKSFCLTLQKDMAYSLEQFGEKITALGYERVSLVETEGQWSRRGDI 183

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK-IRNVETIKIYANSHYVTPRPTLNT 394
           +++FP   E +  R+  FG+DIE+I EF P T +  +  V  I +   S           
Sbjct: 184 VDVFPVACE-LPVRLEWFGDDIEKIREFDPSTQRSALDKVNQITLTPTSFAPI------- 235

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
                          L          +   ++  + E++E       +E   R+L     
Sbjct: 236 --------------VLSALKDNAPFWQFSSQLDLNSEVIEN----SGLEGSRRFLGF--A 275

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGM-YRGDFHRKATLAEYGFRLPSCMDNRPL 513
            + P ++ +Y+P ++L+ +DE               D        +     P    N   
Sbjct: 276 FDQPASILDYLPTNTLVAIDEIEQCHAHGDRWVENADEQWLLINDQLSTTFPKIHIN--- 332

Query: 514 RFEEWNCLRPTTIVVSATPGSWEL--EQCQGIIVEQIIRPT---------GLVDPPVEIR 562
               +       +   +T    E+  E    I  +   +PT          L   P+ I 
Sbjct: 333 ----FEECLGEKVSNFSTLYLSEIAEENSGNITDKDASQPTSSHRFVPSYNLAGRPLPIH 388

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
               Q   +   I         + +       +  L   L E +   +++ +        
Sbjct: 389 P--HQFAKLAATIRQERDHKFAVWIISAQPSRSVAL---LQEHDCAAQFIPNPRD----Y 439

Query: 623 EIIRDLRLGKFDVLVGINLLR--EGLDIPECGLVAILDADKEG 663
           + I  L++ +  V +  + L   EG+ +P   LV I D +  G
Sbjct: 440 QAIDKLQINQTPVALKYSGLAELEGVILPSYRLVIITDREFYG 482



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 19/196 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      I E  +  T    PP   R  +T +     + V   I    
Sbjct: 781 VLTLSATPIPRTLYMSLSGIREMSLITT----PPPTRRPIQTHLAPLNPQIVSSAIRQEL 836

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      E+ T  L E     R++  H ++   +    +      + D+LV
Sbjct: 837 DRGGQVFYVVPRVEGIEETTTRLREMIPSGRFVIAHGQMDESQLESTMLTFSNHEADILV 896

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA + G L     L   +GRA    ++ +           
Sbjct: 897 CTTIIESGLDIPRVNTILIEDAHRFG-LSQLYQLRGRVGRAGIQAHAWLFY-------PK 948

Query: 698 QLAIDETTRRREKQLE 713
           Q  + +  R+R + ++
Sbjct: 949 QRELSDAARQRLRAIQ 964


>gi|330465805|ref|YP_004403548.1| transcription-repair coupling factor [Verrucosispora maris
           AB-18-032]
 gi|328808776|gb|AEB42948.1| transcription-repair coupling factor [Verrucosispora maris
           AB-18-032]
          Length = 1232

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/308 (18%), Positives = 107/308 (34%), Gaps = 42/308 (13%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
             RP + +      A  L +   +  P   V  F S+ +    E   PR+DT   + +  
Sbjct: 75  AGRPVLAVTATSREAEDLVAALGSLLPAEQVAIFPSW-ETLPHERLSPRSDTVGRRLAV- 132

Query: 252 NEQIDRMRHSATRSLLER--NDCIVVSSVSCI-----YGIGSVESYSQMIVQLKIGDSVE 304
              + R+ H        R     +VV+ V  +      G+G +E        L  GD  +
Sbjct: 133 ---LRRLAHPDATDAHGRTGPLRVVVAPVRSLLQPQLKGLGDLEPVR-----LSAGDEAD 184

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
            +++   L    Y R D+   RG F V G  +++FP   ++   RV  +G+++EEI  F 
Sbjct: 185 LEQVARRLTDMAYARVDLVTKRGEFAVRGGILDVFPP-TDEHPSRVEFWGDEVEEIRTFA 243

Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
               + I  V  +        +        A       L  +  EL +            
Sbjct: 244 VADQRTIEQVPQLWAPPCRELLLTPAVRERA-----AALAQQHPELAEI----------- 287

Query: 425 RITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQIS 484
                L+ L      + +E+ +  L G +  E    L + +P  + + + +      +  
Sbjct: 288 -----LDKLAGGVPVEGMESLAPALIGADSMEL---LLDCMPAGTHVLLCDPERIRTRAH 339

Query: 485 GMYRGDFH 492
            + R    
Sbjct: 340 DLVRTSDE 347



 Score = 47.4 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 51/149 (34%), Gaps = 11/149 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE-----INLAA 579
            + +SATP    LE     I E     T    PP E     T V    D      I+   
Sbjct: 826 VLSMSATPIPRTLEMAITGIREMSTIAT----PPEERHPVLTAVGAYDDRQVAAAIHREL 881

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     L E     R    H ++      +++      +FDVLV
Sbjct: 882 LRDGQVFYLHNRVESIERTARKLRELVPEARVAVAHGQMGEEALEKVMVGFWEKEFDVLV 941

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLR 666
              ++  G+DIP    + +  AD  G  +
Sbjct: 942 CTTIVESGIDIPNANTLIVERADLLGLAQ 970


>gi|94266121|ref|ZP_01289836.1| Transcription-repair coupling factor [delta proteobacterium MLMS-1]
 gi|93453318|gb|EAT03758.1| Transcription-repair coupling factor [delta proteobacterium MLMS-1]
          Length = 1162

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/463 (16%), Positives = 142/463 (30%), Gaps = 54/463 (11%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ---RPAIVMAPNKILAAQLYSEFK 214
             L++ +   ++   + GV G      +A ++  +    RP + + P+   A QL ++  
Sbjct: 2   DDLIRSLGQCKEPLDIYGVRGGA----VAWLVGRLGGLARPLLCVCPDDEQARQLATDLA 57

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            F     V Y       Y      P +                               +V
Sbjct: 58  LFSDLPVVHYPDLEVAPYAALRPDPGSRAARLAALFAISD------------AASPFIMV 105

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
            +  +        E    +   +  G+  +  EL   L    Y+R  +    G + + G 
Sbjct: 106 AAGRALSARTLPPERLQALAELVIRGEECDAAELTGRLAAGGYERVALVQEVGEYSIRGG 165

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH--YVTPRPTL 392
            I+IFP   ++   R+  FG+ +EEI  F P++ + +  +    +   S   Y       
Sbjct: 166 IIDIFPP-GQEYPLRLDFFGDTVEEIRRFDPISQRSVGELAEAILLPASDCLYPAADSPA 224

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
             A+     +    L    +  R LE            E L         + +   L   
Sbjct: 225 QQALLERHRQWAASLQWDRQPSRQLE------------ECLRQHRPFAGDQFFLPLL--- 269

Query: 453 NPGEPPPTL--FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF-RLPSCMD 509
                P  L    Y+P ++L+   +    +  ++            L       LP   D
Sbjct: 270 ----EPAALSPLAYLPANTLIIQVDHPRLLQNLALHRERIASNYQELTATAQPALPP--D 323

Query: 510 NRPLRFEE----WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565
              L  E+    +       I   A PG    ++   I     +     +D     R   
Sbjct: 324 ELFLSAEQLHGHFEQAAGARIFPLA-PGEANGQRVFQIEAGNHVLLKQQLDLK---RREE 379

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
             +  +  +I    QQG R+LL   T R A  + E L    + 
Sbjct: 380 GLLAPLAQQIKQWRQQGERVLLACRTPRHAAKMAELLAGHGVT 422



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 24/171 (14%)

Query: 548 IIRPTGLVDPPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           I R   LV     +R      QV  V++ ++   +   R    V T              
Sbjct: 792 IARHDDLVIKEAIMRELGRDGQVFLVHNRVSSIHEVATRAQQLVPT-------------- 837

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
             +V   H ++   +  EI+      + +VLV   ++  GLDIP+   + I  AD+ G  
Sbjct: 838 -AQVAVAHGQMPARQLEEIMVRFVRREINVLVCTTIIESGLDIPDANTIIITRADRLGLA 896

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
                  Q  GR  R+       YA  +  ++     E   R +  +++N+
Sbjct: 897 EIY----QLRGRVGRSRQQ---AYAYLLVPALDDLAGEARHRLQALMDYNE 940


>gi|186685547|ref|YP_001868743.1| transcription-repair coupling factor [Nostoc punctiforme PCC 73102]
 gi|186467999|gb|ACC83800.1| transcription-repair coupling factor [Nostoc punctiforme PCC 73102]
          Length = 1170

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 82/510 (16%), Positives = 176/510 (34%), Gaps = 71/510 (13%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +R++   L G++   K    + + +A  +   V+      A ++Y++ +         Y 
Sbjct: 24  NRQQELRLNGISRLPKGLVASALAQAQGKDLFVVCATLEEAGRVYAQLEAMGWQTVHFYP 83

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQI--DRMRHSATRSLLERNDCIVVSSVSCIYG 283
            S    Y+P  + P T+    +   + + +  +   +    +       IV +  +    
Sbjct: 84  TSEASPYEP--FDPETEMSWGQMQVLADLVMGNGEENQIPSNSQLPKMAIVATQGALQPH 141

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +   E++ Q  + LK G  ++       +    Y+R  +    G +   GD +++FP   
Sbjct: 142 LPPPEAFGQFCLTLKRGMELDLNAFSEKITILGYERVPLVETEGQWSRRGDIVDVFPVSS 201

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQK-IRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
           E    R+  FG++IE++ EF P T +  +  V+ + +   S                   
Sbjct: 202 E-FPVRLEWFGDEIEQMREFDPATQRSALDKVDQLILTPTSFAPI--------------- 245

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
                  +    +  E + L   +  D E+  +T +   +E   R+L      E P +L 
Sbjct: 246 ------VMAALNKSAEFRVLSPELNPDSEL--STENSSLLEGSRRFLGL--AFEQPASLL 295

Query: 463 EYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD-------NRPLRF 515
            Y+ +++L+ +DE      Q               AE  +RL +  +       +R    
Sbjct: 296 NYLSKNTLIAIDEP----EQCHAHSNRWVEN----AEEQWRLGAAEESSQVPKIHRSFDD 347

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
              +  +  T+ +S    S E            + P               Q   + + I
Sbjct: 348 CLADIAKFKTLYLS--ELSEENSGINLASRSLPVTPH--------------QFAKLAETI 391

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                +   I L       +  L   L E +   +++ +        + I  L++    +
Sbjct: 392 RQERDRNFSIWLLSAQPSRSVSL---LQEHDCPAQFIPNPRD----YQAIDKLQINHTPI 444

Query: 636 LVGINLLR--EGLDIPECGLVAILDADKEG 663
            +  + L   EG  +P   +V + D +  G
Sbjct: 445 ALKYSGLAELEGFILPTYRIVIVTDREFFG 474



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 90/250 (36%), Gaps = 15/250 (6%)

Query: 525  TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             + +SATP    L      I E  +I         ++   +    E +   I     +G 
Sbjct: 773  VLTLSATPIPRTLYMSLSGIREMSLITTPPPTRRAIKTHLSPINSESIRSAIRQELDRGG 832

Query: 584  RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
            ++   V      E+ T  L E     R+   H ++   E    +     G  D+LV   +
Sbjct: 833  QVFYVVPRVDGIEETTANLREVIPGARFAIAHGQMDESELESTMLTFSNGDADILVCTTI 892

Query: 642  LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            +  GLDIP    + I DA + G  +    L   +GRA    ++ +           Q  +
Sbjct: 893  IESGLDIPRVNTILIEDAHRFGLAQ-LYQLRGRVGRAGIQAHAWLFY-------PKQRQL 944

Query: 702  DETTRRREKQLEHNKKHNINPQSVKEKIMEV-IDPILLEDAATTNISIDAQQLSLSKKKG 760
             +  R+R + ++   +        +  + ++ I  +     A  +  +DA    L  +  
Sbjct: 945  SDAARQRLRAIQEFTQLG---SGYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEML 1001

Query: 761  KAHLKSLRKQ 770
            +  ++ +R Q
Sbjct: 1002 EEAIREIRGQ 1011



 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 16/153 (10%)

Query: 527 VVSATPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSAR---------TQVEDVYDEI 575
             S  P   ELE         +Q+     +       R             + E     +
Sbjct: 605 FPSDMPWQEELEDSFPYQPTTDQLKAVQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAV 664

Query: 576 NLAAQQGLRILL----TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             A   G ++ L    T+LT++    L E      + V  ++      ER +I + L  G
Sbjct: 665 FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYPVNVGLLNRFRSAEERRDIQKRLATG 724

Query: 632 KFDVLVGI-NLLREGLDIPECGLVAILDADKEG 663
           + DV+VG   LL +G+   + GL+ + +  + G
Sbjct: 725 ELDVVVGTQQLLGKGVMFRDLGLLVVDEEQRFG 757


>gi|172087806|ref|YP_206418.2| transcription-repair coupling factor [Vibrio fischeri ES114]
 gi|197337336|ref|YP_002158058.1| transcription-repair coupling factor [Vibrio fischeri MJ11]
 gi|171902389|gb|AAW87530.2| transcription-repair coupling factor [Vibrio fischeri ES114]
 gi|197314588|gb|ACH64037.1| transcription-repair coupling factor [Vibrio fischeri MJ11]
          Length = 1151

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 123/298 (41%), Gaps = 38/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS     +A++ +  Q P IV      LA +L +E  N F  NAV+ F  + +    +
Sbjct: 24  LTGSSLALAIAEIEQQHQGPIIVAVTEPQLAFRLQNEI-NQFSQNAVDVFPDW-ETLPYD 81

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMI 294
           ++ P  D        I++++ R+ H     L ++ +  ++  VS +    S +S+  +  
Sbjct: 82  SFSPHQDI-------ISDRLSRLYH-----LPQQKNGTLIVPVSTLLQRQSPQSFLHKHA 129

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + + +GD +   +L   L K  Y   D  +  G +   G  I++FP       +R+  F 
Sbjct: 130 LVVNVGDRLSFDKLKLQLEKSGYLHVDQVMSHGEYASRGSIIDLFPM-GNGHPFRIDFFD 188

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I +F P   + I  V++I +     + T       A++  +   + R     +  
Sbjct: 189 DEIDSIRQFDPENQRTIEEVKSINLLPAHEFPTDDE----AIEDFRIRWRQRFDARREPE 244

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
            +              + +        +E +          +   TLF+Y+P+++LL 
Sbjct: 245 SV-------------YQQISKGAWPAGVEYWQPLFF-----DETETLFDYLPDNTLLV 284



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 75/198 (37%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      + +  I  T            R + +DV  + I    ++G 
Sbjct: 755 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVREKADDVIKEAILREIKRGG 814

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++ +        ++  E + +     R    H +++  E  +I+ D    +F+VLV   +
Sbjct: 815 QVYVLHNNVDTIQNAAEEIEKLIPEARVTLAHGQMRERELEKIMGDFYHQRFNVLVCTTI 874

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + +  ADK G  +    L Q  GR  R+ +         +      A+
Sbjct: 875 IETGIDVPTANTIIMDRADKLGLAQ----LHQLRGRVGRSHHQAYAY----LLTPHPKAL 926

Query: 702 DETTRRREKQLEHNKKHN 719
            +  R+R   +   +   
Sbjct: 927 SKDARKRLDAIASLEDLG 944


>gi|170077902|ref|YP_001734540.1| transcription-repair coupling factor [Synechococcus sp. PCC 7002]
 gi|169885571|gb|ACA99284.1| Transcription-repair coupling factor (TRCF) [Synechococcus sp. PCC
           7002]
          Length = 1162

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/521 (14%), Positives = 169/521 (32%), Gaps = 78/521 (14%)

Query: 158 AQLLKGIHSREKVQ---LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A L   ++ + + Q    L G+    K    + + +  ++  +V+      A +  ++ +
Sbjct: 13  AALTAELNQKLQTQGELALSGLPRLPKGLLASSLAQLQEKNLLVVCATLEEAGRWAAQLE 72

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
                  + Y  S    Y  EA+ P ++    +  ++         +  +S       +V
Sbjct: 73  AMGWGQVLFYPTSEASPY--EAFDPESEMIWGQMQTLG------AIAQGQSSNVGKGMVV 124

Query: 275 VSSVSCIYGIGSVES-YSQMIVQLKIGDSVEQK-ELLSSLVKQQYKRQDIGIIRGTFRVC 332
           V++   +      ++ +    + L  G+ ++    + + L +  Y+R +I    G +   
Sbjct: 125 VTTERALQPHLPPQTVFQDYCLTLTPGEELDHAGAIATQLTRLGYERVNIVETEGQWTRR 184

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++IFP   E +  R+  FG+ +E I EF P + + +  V+ + +             
Sbjct: 185 GDIVDIFPVSGE-LPIRLDFFGDQLESIREFDPNSQRSLDKVDQLVLTPT---------- 233

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
                                G+ +           + E        + ++ +     G 
Sbjct: 234 ---------------AWAPLIGQQILDPADLPLTPEEKEQWADGVYPEGMQRFL----GI 274

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              +   ++ EY+PE++L+ +DE    +      Y     +   L    F LP       
Sbjct: 275 AFADQVASILEYLPENTLVAIDELSQCLAHGDRTYETSEAQWQ-LLNGDFPLPKIHRRVQ 333

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             F++ +       +        EL+      V    RP         +     Q   + 
Sbjct: 334 ENFDQVSQRYQKITLA-------ELDDVSETSVNLSSRP---------VPITPHQFGKLA 377

Query: 573 DEINLAAQQGLRILLTVLTKRMAE-DL--------TEYLYERNIRVRYMHSEVKTLERIE 623
           + +     +G R + + +T       L           L E +   +++ +        +
Sbjct: 378 EIL-----RGKREIYSTITLDKYNAWLVSAQPSRSVSLLQEHDCAAQFIPNPRDYPAIEK 432

Query: 624 IIRDLRLGKFDVLVGINLLR-EGLDIPECGLVAILDADKEG 663
                R G    L        EG  +P   +  + D +  G
Sbjct: 433 HQ---RQGTAIALKYKGQAELEGFILPTFRIAVVTDREFYG 470



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 70/191 (36%), Gaps = 19/191 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      I E  +  T    PP   R  +T V     E +   I    
Sbjct: 766 VLTLSATPIPRTLYMSLSGIREMSLITT----PPPSRRPIQTHVSRHNPEIIRTAIRNEL 821

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G +I   V      E +   L E     R    H ++   +    +     G+ D+L+
Sbjct: 822 DRGGQIFYVVPRVEGIETIATQLQEMIPSARVAIAHGQMNEADLETTMLTFNNGEADILL 881

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + + DA K G L     L   +GR+    ++ ++          
Sbjct: 882 CTTIVESGLDIPRVNTIIVEDAQKFG-LSQLYQLRGRVGRSGIQAHAWLLY-------PS 933

Query: 698 QLAIDETTRRR 708
           +  + E  R+R
Sbjct: 934 KGELTEKARKR 944



 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 82/208 (39%), Gaps = 31/208 (14%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI-NLLREGL 646
           T+LT++    L E      I +  ++      ER +I+  L  G+ D++VG   LL + +
Sbjct: 674 TILTQQHYHTLKERFSPYPINIGLLNRFRTASERKDILERLHKGELDIVVGTQQLLGKDV 733

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA---IDE 703
              + GL+ + +  + G  + +        +A +     + L A  I +++ ++   I E
Sbjct: 734 QFKDLGLLVVDEEQRFGVNQKEKI------KALKTKVDVLTLSATPIPRTLYMSLSGIRE 787

Query: 704 TT-------RRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
            +        RR  Q  H  +HN  P+ ++  I   +D           +    + +   
Sbjct: 788 MSLITTPPPSRRPIQT-HVSRHN--PEIIRTAIRNELD----RGGQIFYVVPRVEGIETI 840

Query: 757 KKKGKAHLKSLR-----KQMHLAADNLN 779
             + +  + S R      QM+ A  +L 
Sbjct: 841 ATQLQEMIPSARVAIAHGQMNEA--DLE 866


>gi|56479184|ref|YP_160773.1| transcription-repair coupling protein Mfd [Aromatoleum aromaticum
           EbN1]
 gi|56315227|emb|CAI09872.1| Transcription-repair coupling protein Mfd [Aromatoleum aromaticum
           EbN1]
          Length = 1157

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 83/495 (16%), Positives = 162/495 (32%), Gaps = 76/495 (15%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +A++        +++  N + A +L  E               ++      
Sbjct: 29  LAGSSDALAIAQLATRGPC-LLLVTANPLDAQRLQDEIA-------------WFAPALRT 74

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV-VSSVSCIYGIGSVESYSQMI 294
             +P  +T      S ++ +   R S   ++      +V V + + +Y +      +   
Sbjct: 75  HLLPDWETLPYDSFSPHQDLISERLSTLYAVSRGEADVVLVPASTALYRMAPPAFLAAYT 134

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             LK G  ++   L + +    Y      +  G F V G  I++FP     + +R+ +F 
Sbjct: 135 FFLKQGAKLDVDGLRNQMAIAGYTHVTQVVSPGEFSVRGGLIDLFPMGAA-LPFRIDLFD 193

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           +++E I  F P T + +  V  I++     +                            G
Sbjct: 194 DEVESIKTFDPDTQRTVYPVPEIRMLPAREFPMD-----------------------DAG 230

Query: 415 RLLEAQRLEQRITYD------LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           R     R  +    D       + +    +   IE Y          +   TLF+Y+P D
Sbjct: 231 RTRFRSRFRETFEGDPSRVSLYKDVSNGIAPAGIEYYLPLFF-----DQTATLFDYLPPD 285

Query: 469 SLLFVDESHVTIP-QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           + + +   H  +P  I   +R    R      + F L        L  E           
Sbjct: 286 TAVVL---HRDVPAAIDEFWRDTRSR------HDF-LKGDRSRPVLPPEAL--FLGQESF 333

Query: 528 VSATPGSWELEQCQGIIV-EQIIRPTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRI 585
            +A      ++   G    E     T L D  VE R A   +  + + +    A+ G R+
Sbjct: 334 FAALKDRPRIQVSAGEAAGEAPPPATPLPDVSVE-RKATDPLHRLKELLAGDWARSGGRV 392

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+        E ++E+  E           +K     +    L  G+   L G+  L  G
Sbjct: 393 LVLADAPGRRETISEFFGEYG---------LKPAPSADFAGFLVSGEPLAL-GVGPLANG 442

Query: 646 LDIPECGLVAILDAD 660
             +P   +  + +++
Sbjct: 443 FLLPGAQIAIVTESE 457



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 30/164 (18%)

Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
              +GII E ++R                QV  +++E++                 + ++
Sbjct: 806 RHSKGIIREAVLREFKR----------GGQVYFLHNEVDTID-------------NVRDE 842

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L E L E  I +   H ++   E   ++R     + ++L+   ++  G+DIP    + I 
Sbjct: 843 LAELLPEARIVIG--HGQLPERELERVMRTFTQQRANLLLCTTIIETGIDIPTANTIIIN 900

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSIQLA 700
            AD+ G  +    L Q  GR  R+ + +   L  D   K   LA
Sbjct: 901 RADRFGLAQ----LHQLRGRVGRSHHQAYAYLLTDAHAKPSALA 940



 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 14/135 (10%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           ++ ++ +   +  +   L  L                      +    D+  F     + 
Sbjct: 565 EKAKKKAALQVRDTAAELLALYAQR----------AARPGHRFDFKQHDLDAFAEGFGFE 614

Query: 149 PSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKI 204
            + DQ AAI  ++  + S +   +L+ G  G GKT      A V  A  +  +V+ P  +
Sbjct: 615 TTPDQQAAIDAVVTDMKSGQPMDRLVCGDVGFGKTEVALRAAFVAVADGKQVVVLTPTTL 674

Query: 205 LAAQLYSEFKNFFPH 219
           LA Q Y  F + F  
Sbjct: 675 LAEQHYQTFSDRFAD 689


>gi|121998047|ref|YP_001002834.1| transcription-repair coupling factor [Halorhodospira halophila SL1]
 gi|121589452|gb|ABM62032.1| transcription-repair coupling factor [Halorhodospira halophila SL1]
          Length = 1147

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 83/486 (17%), Positives = 152/486 (31%), Gaps = 69/486 (14%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
            G+ G+ +   +A+       P I +      AA L      F   +        ++   
Sbjct: 19  SGLLGAAQPLAIAEAARQHDGPVIAVTGTPQQAAALQEAVGFFLGDDVPVLGFPDWETLP 78

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
            + + P  D   E+   +       R  A          +VV + + ++ +         
Sbjct: 79  YDVFSPHQDIISERLLGLY------RLPAMT-----RGVLVVPAATLMHRLPPRGWLEGR 127

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            + L  GD +E + +   L    Y+        G F V G  +++FP   E   +R+ +F
Sbjct: 128 SLMLHPGDRLEIEPMRRRLEAAGYRCVPEVGEHGEFAVRGALLDLFPMGGE-TPYRIDLF 186

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
            +++E +  F P T +    V+ I++     + T    +    +  + E +         
Sbjct: 187 DDEVESLRRFDPETQRTTDQVDAIELLPAREFPTDEGGITRFRQAFRAEFE--------- 237

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
           G            ++    +        IE Y          E   TLF+Y+PE +L   
Sbjct: 238 GDPAR--------SFLYRAVSEGRIPGGIEYYLPLFF-----EETATLFDYLPEGTLAIR 284

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
            E   T     G ++    R              MD  PL         P  + +     
Sbjct: 285 LEG--TDATADGFWQQVQDRYEQRT-------GDMDRPPLP--------PRRVFLDGDEL 327

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRS---ARTQVEDVYDEINLAAQQGL--RILLT 588
              L +   +++     P    D  V+      AR Q +   + +      G   RIL T
Sbjct: 328 RAGLNRRPQVVLHG--EPGRGSDADVDALPELAARPQADRPLERLEQF-HAGYPGRILFT 384

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
             +    + L E L    I  R           ++  RD   G     + +  L  G  I
Sbjct: 385 AESAGRRQGLQERLTRSGIEAR----------SVQGWRDFLDGDVPAAITVAPLETGARI 434

Query: 649 PECGLV 654
               ++
Sbjct: 435 DGIAII 440



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 71/179 (39%), Gaps = 13/179 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      I +  +  T   +  + +++   +  D  + +      Q+G
Sbjct: 748 VLTLTATPIPRTLNMSMAGIRDLSVIAT-PPERRLAVKTFVQEWSDGLIREACQRELQRG 806

Query: 583 LRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++       +  E     L + + E  I V   H +++  E  +++ D    +FD+LV 
Sbjct: 807 GQVYFLYNDVKSIERTANQLRDLMPEARIGVA--HGQMRERELEQVMLDFYHQRFDILVC 864

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++  G+DIP    + I  AD+ G  +    L Q  GR  R+ +            ++
Sbjct: 865 TTIIESGIDIPTANTIIIHRADRFGLAQ----LHQLRGRVGRSHHRAYAYLLAPPPNAM 919



 Score = 39.3 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIE--AMQRPAIVMAP 201
            +  + DQ AAI  +L  + S +   +++ G  G GKT   M          R   ++ P
Sbjct: 595 PFEETPDQQAAIQAVLDDLRSDQPMDRVVCGDVGFGKTEVAMRAAFAGVQAGRQVAMLVP 654

Query: 202 NKILAAQLYSEFKNFFPHNAV 222
             +LA Q Y  F + F    V
Sbjct: 655 TTLLAQQHYQNFADRFADWPV 675


>gi|88860092|ref|ZP_01134731.1| transcription-repair ATP-dependent coupling factor
           [Pseudoalteromonas tunicata D2]
 gi|88818086|gb|EAR27902.1| transcription-repair ATP-dependent coupling factor
           [Pseudoalteromonas tunicata D2]
          Length = 1157

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 110/298 (36%), Gaps = 37/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS  +  +A+ +++     +++  +   A +L +E +   P  +V  F          
Sbjct: 24  LPGSALSIAIAQGVKSHNSLVVLVTQDTPSALKLEAELEYLLPEQSVMVF---------- 73

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R +    L +    I++  V + +      E      
Sbjct: 74  ---PDWETLPYDHFSPHQDIISQRLATLNRLKQSKTGILILPVTNLMLRTSPPEFIYGST 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           +  K GD ++  +L ++L    Y      +  G F + G  ++I+P   +D   R+ +F 
Sbjct: 131 LLFKKGDKLDAHQLRTNLDAAGYLNVQQVMEHGEFAIRGSLVDIYPMGSKD-PIRLDLFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F   T +  + +  I +     + T    + T           R+   EK G
Sbjct: 190 DEIDSIRLFDVETQRSSKEISHIDLMPAHEFPTREKDIETF----------RIAYREKFG 239

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
                  +  +++              IE Y          +   ++F+Y+P D+++ 
Sbjct: 240 ANSAQDSIYMQVSK-------GAWPAGIEYYLPLFF-----DQLASIFDYLPSDAVVM 285



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 13/187 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+    + + +   + I    ++G 
Sbjct: 760 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRKGEDDLKREAILREIKRGG 819

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E    DL   + E +I     H +++  E   ++ +    K++VLV  
Sbjct: 820 QVYYLHNNVETIEKVAADLAVLVPEASITTA--HGQMRESELEHLMAEFYHKKYNVLVCT 877

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K I  
Sbjct: 878 TIIETGIDVPTANTIIIDRADKLGLAQ----LHQLRGRVGRSHHQAYAYLLIPDPKGISK 933

Query: 700 AIDETTR 706
             D T R
Sbjct: 934 --DATKR 938


>gi|302343056|ref|YP_003807585.1| transcription-repair coupling factor [Desulfarculus baarsii DSM
           2075]
 gi|301639669|gb|ADK84991.1| transcription-repair coupling factor [Desulfarculus baarsii DSM
           2075]
          Length = 1147

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 93/504 (18%), Positives = 175/504 (34%), Gaps = 46/504 (9%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +   L+ GV G+ + F +A++   +  P +V+ P   +A  L  + + F           
Sbjct: 4   DGAALIGGVEGAARAFALARLWLDIPGPTLVVCPTLPVAETLCRDLEFFLG--------- 54

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-ERNDCIVVSSVSCIYGI-G 285
                 P    P  +    +      ++   R +    L+ E    IVV+S   + G   
Sbjct: 55  ---AAGPVRLFPSYEVSPYQGVDPPAEVTARRLAILWELIAEERPLIVVTSARALAGRQP 111

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
             E      + ++ G ++E+ EL+  LV   Y    +    G F V G  ++ F   L+D
Sbjct: 112 PPEHLVDHSLVVEPGATLERDELVRYLVDGGYSPAPLVEQVGDFAVRGSVVDFFGPLLDD 171

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              RV  FG++I+ +  F P+  +    +    +          P +  A++ ++     
Sbjct: 172 -PVRVEFFGDEIDSVRRFDPVDQRSQLPLTGATLIPCLPVELSAPAVERAVERLR----- 225

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           RL + E  G          R++  +E LE       +E        R+       LF+Y+
Sbjct: 226 RLAKDEGLGAR--------RLSELVERLERRAPFAGLEGLLPLFFQRSGD-----LFDYL 272

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL--PSCMDNRPLRFEEWNCLRP 523
           PE     V E      ++           A   E G  +  P  +   P + ++     P
Sbjct: 273 PEGCRRVVIEPAEVEARLRAEQERLAEGFAQAREEGAIVLAPEMLCRTPAQVQQRLAAGP 332

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYDEINLAAQQG 582
             +  +   G  E  Q    I  +    TGL       R      +  +        +QG
Sbjct: 333 RLLCRALAMGGEE--QGGRAIRLRAAAHTGLRQELC--RGGEGSLIASLLQWCAAKNEQG 388

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            ++ L   ++   E L E L +R    R + +  +    +    D       +L+    L
Sbjct: 389 RQVALVCRSRTQVERLAELLAQREAPCRVIQAPAQAEGFVRRPED------SLLLLQGGL 442

Query: 643 REGLDIPECGLVAILDADKEGFLR 666
             G +  +  L  + + +  G  R
Sbjct: 443 TVGFEPDDLPLCFVTEDEIFGAPR 466



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 11/189 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            I ++ATP    L+    G+    +I         ++   +      V + +    ++G 
Sbjct: 760 VITLTATPIPRTLQMSLSGVRDLSVINTPPEDRQSIKTYLSAFSPGGVSEAVARELERGG 819

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  + +   +     + R    H ++   E  +++      + DVLV   +
Sbjct: 820 QVFFVHNRVQDLDKMAGLVRRLAPQARVAMAHGQMAEKELEKVMLQFVHKEVDVLVCTTI 879

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + I +ADK G  +      Q  GR  R+                + A+
Sbjct: 880 IESGLDIPSANTIIINNADKFGLSQIY----QLRGRVGRSAQRAYAYLFIK----SEAAL 931

Query: 702 DETTRRREK 710
               R+R K
Sbjct: 932 SSDARKRLK 940



 Score = 42.0 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           TVLT++  + LT+ L ++ + V  +       ++ +I+  LR GK D+LVG + ++++  
Sbjct: 668 TVLTEQHCQTLTQRLKDQPLVVESLSRFKTPAQQKDILERLRQGKVDILVGTHRIIQKDA 727

Query: 647 DIPECGLVAILDADKEG 663
              + GLV + +  + G
Sbjct: 728 VFKDLGLVIVDEEQRFG 744



 Score = 40.8 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 14/176 (7%)

Query: 48  RIRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALA 107
            I  + G      A RM +  +             ++     +    ++  +  +V+   
Sbjct: 519 EISYKDGDRLYLPADRMALISKYRGPDGAAP----ALDRLGGKAWAKAKGRVKKAVET-- 572

Query: 108 RLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHS 166
             I  D   L   +  +   +++  +       F+    Y  + DQ  AI  ++   I  
Sbjct: 573 --IAHDLVELYAARQASKGFAFTPPD--GAYREFEAGFPYEETPDQAQAIEDVIADMITD 628

Query: 167 REKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           +   +L+ G  G GKT      A +     +    +AP  +L  Q           
Sbjct: 629 KPMDRLVCGDVGYGKTEVALRAAFLAAMQGKQVAFLAPTTVLTEQHCQTLTQRLKD 684


>gi|304440475|ref|ZP_07400363.1| transcription-repair coupling factor [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371041|gb|EFM24659.1| transcription-repair coupling factor [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 1148

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 75/492 (15%), Positives = 181/492 (36%), Gaps = 52/492 (10%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
            R+    L G +       +  + E      IV+  ++    ++  + K+     A  Y 
Sbjct: 22  DRDNSAGLFGWSDGATGAFVYTISEDFN-NTIVICKDETRCKKVTEDLKS-LGKKAWFY- 78

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GI 284
                        P  D +  +     E   + R  A  S+ + +  I+V++   I   I
Sbjct: 79  -------------PAKDLFFYEREYKTEDNLKERLQARYSIYKGDKPIIVTTFRAIRDKI 125

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
            + + +++ I +++ G  ++  E ++ L+K  Y+R       G F + G  I+I   +  
Sbjct: 126 LNSKIFTENIRKIEFGMDIDLDEFVNYLLKIGYERTIQTETLGEFSIRGGIIDI---YSP 182

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           + A+R+ +F  +++ I +F   + + + N++  +I      +                  
Sbjct: 183 NGAFRIELFDTEVDSIRKFDIESQRSLENLDECEIVPVKELILDEDEFLKIKNK------ 236

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
               +++K       +RLE++    ++ LE+    ++I+    ++  +       ++ +Y
Sbjct: 237 -IENKIKKTKDKTAKERLEEKFGPYIDALESFTLPKNIDLILPFIDEKYL----SSIVDY 291

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           + EDSL  +++    +   +          A L   G    S  + R  + E        
Sbjct: 292 M-EDSLFVLEDPRFILDGENDKEEIFLENLADLMSRGEITESFDEVR-YKIENTISKINK 349

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
             V+S                 +      L      + +   +++   +++     +G +
Sbjct: 350 EKVLSL--------NTLLNPTREFYPKMSLNINMKSVVNYLGRIKVFVEDLKTYLYKGYK 401

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+   +++ A+ L   L +  I   +  SE + +E +  +         V+V    L E
Sbjct: 402 VLIMSGSEKKAKRLISTLNDNEIAANF--SEDRNMEILSSM---------VVVTTGTLNE 450

Query: 645 GLDIPECGLVAI 656
           G +I E   + +
Sbjct: 451 GFEIRENKTLVL 462



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 74/193 (38%), Gaps = 19/193 (9%)

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-----VYDEINLAAQQG 582
           ++ATP    L+     I +  +    + +PP E    +T V +     + + I    ++G
Sbjct: 766 LTATPIPRTLQMSMIGIRDMSV----IEEPPEERFPIQTYVTEENDMLIREAILKEIERG 821

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER--IEIIRDLRLGKFDVLVGIN 640
            ++          E++   L +      +  +  +  ER   + +      + DVL+   
Sbjct: 822 GQVYYVSNRVSNMEEILLKLKKLVPEATFGIANGQMSERVLEDTMLSFINQEIDVLICST 881

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + + ++++ G  +    L Q  GR  R+     + +           
Sbjct: 882 IIETGMDVPNANTMIVTESNRLGLSQ----LYQLRGRIGRSNRLAYVYFTYRKNTE---- 933

Query: 701 IDETTRRREKQLE 713
           I E   +R K ++
Sbjct: 934 ISEIASKRLKSIK 946


>gi|294340382|emb|CAZ88763.1| Transcription-repair coupling factor (TRCF) (ATP-dependent helicase
           mfd) [Thiomonas sp. 3As]
          Length = 1160

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 89/541 (16%), Positives = 176/541 (32%), Gaps = 66/541 (12%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE--AMQRPAIVMAPNKILAAQLYSEF 213
           A+   +  +   ++V   L   GS     +A+         P +V+      A +L  E 
Sbjct: 6   ALRAQVPALKPGQRVSWPL-PAGSADALLLAEFCAPRDDAAPWLVVTAGAADAQRLLGEL 64

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           + F P   V               +P  +T      S ++ +   R +   ++  +   +
Sbjct: 65  QWFAPQLRVGL-------------LPDWETLPYDSFSPHQDLISERLATLWAIHNQQIDV 111

Query: 274 VVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           V++  +  I  +   E  +      + G+++ +  L + LV   Y      +  G + V 
Sbjct: 112 VIAPANTAIQRLAPPEFLAAYTFDFRQGEALNEAALRAQLVLAGYNHVSQVMAPGEYAVR 171

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  I++ P     V +RV +FG+ I+ I  F P T + +  V+ +++     +       
Sbjct: 172 GGLIDLHPM-GSPVPYRVDLFGDTIDAIQAFDPDTQRSLYPVKEVRLLPGREFPLDDAAQ 230

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
                      + R  E+ +              +   + + +  +   IE Y       
Sbjct: 231 KR--------FRARWREVFEGD---------PSRSPLYKDMGSGVAGPGIEYYLPLFF-- 271

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS-CMDNR 511
              E   TL +Y+ E + + +     T  Q       + HR   L  +    P+   D  
Sbjct: 272 ---EHTATLPDYLGERTRVVLHGDISTAIQKFWTDTQERHR---LLRHDPERPALAPDQL 325

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVED 570
            L  E +         ++  P +            Q  +PT    P +   R A   +  
Sbjct: 326 FLSEEAFFSRIKPLAQLALRPKAD---------APQTDKPTSAELPDISADRRATRPLAR 376

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +     Q  R LL   +    E L E L E  +  +            E   +   
Sbjct: 377 LAQWLEEGRPQHRRALLLAESAGRRETLRELLQESGLSAQP----------AESWDEFVQ 426

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G     + +  L  G  +P   L  + +   E F  +     +     A NV++ +   A
Sbjct: 427 GTTGFALAVGPLARGFSLPADRLAVLTET--ELFALNPAQRRRRKQEQASNVDALIHDLA 484

Query: 691 D 691
           +
Sbjct: 485 E 485



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 79/195 (40%), Gaps = 20/195 (10%)

Query: 528 VSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
           ++ATP    L    +G+    +I   P   +     +RS    V  + + I    ++G +
Sbjct: 763 LTATPIPRTLGMALEGLRDLSVIATAPQKRLAIKTFVRSESGAV--MREAILREIKRGGQ 820

Query: 585 ILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +          E     L E + E  I +   H ++   +   ++RD    +F++L+   
Sbjct: 821 VYFLHNEVETIENRRRQLEELVPEARIEIA--HGQMHERDLERVMRDFHAQRFNILLCTT 878

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +S+   
Sbjct: 879 IIETGIDVPSANTIVMARADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVPDVQSLTK- 933

Query: 701 IDETTRRRE--KQLE 713
             + ++R E  +Q+E
Sbjct: 934 --QASQRLEAIQQME 946


>gi|194364979|ref|YP_002027589.1| transcription-repair coupling factor [Stenotrophomonas maltophilia
           R551-3]
 gi|194347783|gb|ACF50906.1| transcription-repair coupling factor [Stenotrophomonas maltophilia
           R551-3]
          Length = 1154

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 112/334 (33%), Gaps = 35/334 (10%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            + +   + +A+   A   P +V+A +   A QL ++ +     +             P 
Sbjct: 25  ASPTALAWYLAQAARAHDAPLLVIARDNHGANQLEADLQTLLGGDPAL----------PV 74

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMI 294
              P  +T      S +  I   R SA   L E    +V+  V   +  +          
Sbjct: 75  VAFPDWETLPYDRFSPHPDIISQRLSALHRLPELKRGLVIVPVQTLLQQLAPRSYVIGGS 134

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             LK+G  ++ +     L    Y+     +  G F V G  ++++P   E+   RV +  
Sbjct: 135 FDLKVGQRLDLEAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVYPMGAEE-PLRVELLD 193

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
            DI+ I  F P + + +  VE + +           ++   +      L+ R        
Sbjct: 194 EDIDSIRAFDPESQRSLDKVEAVHMLPGREVPMDEASIARVLAT----LRERFD------ 243

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFV 473
                  ++ R +   + L++  +   +E Y          E   TLF+Y+PE S  +  
Sbjct: 244 -------VDTRRSSLYQDLKSGLAPAGVEYYLPLFF-----ERTATLFDYLPEGSLPVVC 291

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
             +              + ++    E     PS 
Sbjct: 292 VGAGEAAETFWAQTAERYEQRRHDVERPLLPPSA 325



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  +L+E + E  I +   H ++   E  +++ D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRELSELVPEARIGIA--HGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +SI
Sbjct: 890 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVAPDRRSI 930


>gi|302877849|ref|YP_003846413.1| transcription-repair coupling factor [Gallionella capsiferriformans
           ES-2]
 gi|302580638|gb|ADL54649.1| transcription-repair coupling factor [Gallionella capsiferriformans
           ES-2]
          Length = 1134

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 83/512 (16%), Positives = 163/512 (31%), Gaps = 72/512 (14%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +A+      +P +V+  N   A +L  E   F P   V             
Sbjct: 15  LIGSSDALALAQ-FADQHKPLVVITANANEAQRLIEEIPFFAPDLRVHL----------- 62

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESYSQMI 294
             +P  +T      S ++ +   R S    +  ++   +VV   + +Y +   E  +   
Sbjct: 63  --LPDWETLPYDHFSPHQDLISERLSTLHHVRSQSCDVLVVPVTTALYPLPPAEYLAAFT 120

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             +K G+ +    L   +    Y      +  G F V G  I++F +    + +R+ +F 
Sbjct: 121 FFIKRGEKLNLPALREQMTFAGYSHVQQVLSPGEFCVRGGIIDLF-AMGSVLPYRIDLFD 179

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE IS F   T + +  V  I++     +                  K +    ++  
Sbjct: 180 DEIESISTFDVDTQRTLYPVPEIRLLPAREFPLDE--------------KGQAHFRQRFR 225

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
            L E    + RI    + +    +   IE Y          +   T+F+Y+P+++ L + 
Sbjct: 226 DLFEGDPSKSRI---YKEVSKGNAPAGIEYYLPLFF-----DKTATVFDYLPKNATLCL- 276

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYG---FRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
             H  +      +  D   +  L         LP    +  +  EE+         +   
Sbjct: 277 --HGNVDAAIAQFGVDAASRYNLLRGDPQHPLLPLA--DLFMDAEEFFIAARAFARLDIA 332

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
           P         G         T  +      R A    +     +        R LL   +
Sbjct: 333 P--------DGDSANLTPCATDKLPNIAVNRHAEMPTQAFAQFLQTY---DGRTLLLADS 381

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
               E ++ YL E  ++              E        K   ++ I  L+ G  +P+ 
Sbjct: 382 LGRREIMSGYLQEYGLKAEV----------CENFAVFLQHKARFMLCIAPLQNGFLLPDE 431

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            L  + +++    +           R A+  N
Sbjct: 432 RLAIVTESELYASMPRN-----RAARIAKKTN 458



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 92/255 (36%), Gaps = 48/255 (18%)

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLR-- 522
                LL +DE H    Q     +        L      +P  +        +++ +   
Sbjct: 712 FDNLGLLIIDEEHRFGVQQKERLKALRAEVDILTLTATPIPRTLAMSLEGLRDFSIIATA 771

Query: 523 PT-----TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           P         VSA          QG+I E ++R                QV  +++E++ 
Sbjct: 772 PQRRLSIKTFVSA--------YSQGVIREAVLRELKR----------GGQVYFLHNEVDT 813

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            A              MAE LTE L E  IR    H ++   E   ++RD    +F++L+
Sbjct: 814 IA-------------NMAEKLTELLPEARIRTA--HGQMGERELEAVMRDFYQQRFNILL 858

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + +  AD+ G  +    L Q  GR  R+ +     YA  +  S+
Sbjct: 859 CTTIIETGIDVPTANTIIMNRADRFGLAQ----LHQLRGRVGRSHHQ---AYAYLLVDSL 911

Query: 698 QLAIDETTRRRE-KQ 711
                +  +R E  Q
Sbjct: 912 DGLTVQAKKRLEAIQ 926



 Score = 39.3 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPN 202
           +  + DQ AAI  +++ + S +   +L+ G  G GKT      A V     +   V+ P 
Sbjct: 591 FEETPDQAAAINAVIEDLQSGKPMDRLICGDVGFGKTEVALRAAFVAVMDGKQVAVLVPT 650

Query: 203 KILAAQLYSEFKNFFPH 219
            +LA Q Y  F   F  
Sbjct: 651 TLLAEQHYQNFSTRFAD 667


>gi|297626903|ref|YP_003688666.1| Transcription-repair coupling factor [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922668|emb|CBL57245.1| Transcription-repair coupling factor [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 1232

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 87/549 (15%), Positives = 172/549 (31%), Gaps = 82/549 (14%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            AIA  ++   +      + G   + + F  + ++    RP +V+      A  L  E  
Sbjct: 14  PAIADAIEQARAGVPALDIAGPPAT-RAFITSGLVRRAGRPLLVVTSTFREAESLVDELS 72

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +      V Y+ ++ +    E   P +DT          +++ +R  A +  L     +V
Sbjct: 73  SLLGDEEVAYYPAW-ETLPHERLSPNSDTV-------GHRLEVLRRIAGKDDLPAPSVVV 124

Query: 275 VSSVSCI----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
               S +     G+  +      +V+L+  +  +   L + LV   Y R D+   RG F 
Sbjct: 125 APIRSVLQPQVRGLADLP-----VVKLRTAEDYDPSRLEADLVAAAYSRVDLVERRGEFA 179

Query: 331 VCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIKIYANSHYVTP 388
           V G  ++IF P++      RV  FG+ IE++  F     +     V+          +  
Sbjct: 180 VRGGIVDIFAPTYS--HPVRVDFFGDTIEDLRFFTVGDQRSTDETVDEFVAAPCRELLIT 237

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
                 A       L     EL +                 LE +    S + +E     
Sbjct: 238 PEVQQRA-----AALVDAHPELSEM----------------LEKISQGQSVEGMEALIPA 276

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH--------------RK 494
           L           L + +  ++L  V +  +   + + + R                    
Sbjct: 277 LADGVEL-----LVDVMAPETLTLVCDPELVRTRAADLVRTSQEFLHASWAAAAAGGKAP 331

Query: 495 ATLAEYGF-RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT- 552
             LA   +  L     +     + W  L        + P   +         E +     
Sbjct: 332 IDLAASSYQELADVRQHSLDIGQGWWSLSAFAAAPDSAPQGEDPTGESASAGESVSAADA 391

Query: 553 ----GLVDPPVEIRS---ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
               G+ +  +++      R   E     +     +G R++ +V  K +A  + E L + 
Sbjct: 392 AFAGGIPEMILDMEPLPGWRGDAEKAIATMTDDLARGWRVVSSVEGKGLANRMAEMLRDH 451

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +   R +  E+       ++  +  G          LR G   P+  L  +   D     
Sbjct: 452 DTPARVLD-ELPDEPEPHVVSIILSG----------LRHGFRAPDLKLTLVAAGDITNQP 500

Query: 666 RSKTSLIQT 674
            +  S  + 
Sbjct: 501 NADRSSRKM 509



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 66/205 (32%), Gaps = 25/205 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--------RTQVEDVYDEIN 576
            + +SATP    LE     I E     + +  PP E              QV      I 
Sbjct: 800 VLSMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFAGPYDEGQV---VAAIR 852

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
               +  ++ L        + +   + E     R +  H ++      +++ D    + D
Sbjct: 853 REMAREGQVFLVHNRVASIDRVAARIREMVPEARVVTAHGQMSEKTLEKVMVDFWERRAD 912

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV   ++  GLDIP    + +  AD  G  +    + Q  GR  R+       +     
Sbjct: 913 VLVCTTIVEAGLDIPTANTLIVDRADHMGLSQ----MHQLRGRVGRSRERGYAYFLYPGD 968

Query: 695 KSIQLAIDETTRRREKQLEHNKKHN 719
                 +  T   R   L  N +  
Sbjct: 969 ----RTLTTTAHDRLAALAANNELG 989


>gi|160875623|ref|YP_001554939.1| transcription-repair coupling factor [Shewanella baltica OS195]
 gi|160861145|gb|ABX49679.1| transcription-repair coupling factor [Shewanella baltica OS195]
 gi|315267811|gb|ADT94664.1| transcription-repair coupling factor [Shewanella baltica OS678]
          Length = 1165

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 60/334 (17%), Positives = 128/334 (38%), Gaps = 36/334 (10%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            + +  ++Q L  V G  +  T+A +    +   +V+  +   A  L  E         +
Sbjct: 11  AVKNGNQIQTLSTVGGVCQAVTLASLARQHKGTTLVVTSDTPSALSLELELSYLLGKTGI 70

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCI 281
           +               P  +T      S ++ +   R      L +   + ++V   + +
Sbjct: 71  K-----------VRLFPDRETLPYDSFSPHQDLISQRLETLSQLSQIEQNIVIVPVTTLM 119

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +      S  +  LK GDS +  ++   L    Y   +     G F + G  ++IFP+
Sbjct: 120 MRLPPKAYLSANVFVLKKGDSYKLHDVRQHLTDTGYHSVEQVYEHGEFAIRGSILDIFPT 179

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
            + ++  R+ +F  ++E I  F P T + ++ V++I++     +    PT ++A++  ++
Sbjct: 180 GM-NMPLRIELFDEEVETIRHFDPETQRSLQPVDSIRLLPAKEF----PTDSSAIEGFRQ 234

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             + R   + K     E + + Q ++ +L           IENY          +   TL
Sbjct: 235 RYRRRFEVIVK-----EPESVYQLVSRNL-------MPAGIENYLPLFF-----DDTATL 277

Query: 462 FEYIPEDSLLFV--DESHVTIPQISGMYRGDFHR 493
           F+Y+P+D+ L    D        +  +      R
Sbjct: 278 FDYLPKDTQLVTLGDIEKSARAHLQEVEHRYQDR 311



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 87/280 (31%), Gaps = 70/280 (25%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPT-----------GLVDPPVEIRSA-------RT 566
            + ++ATP    L      + +  I  T                P  +R A         
Sbjct: 762 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGG 821

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           QV  +++ +    +    I+             + L E  + V   H +++  +   ++ 
Sbjct: 822 QVYYLHNNVESIEKCAQGII-------------DLLPEARVVVA--HGQMRERDLERVMS 866

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D    +F+VLV   ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +   
Sbjct: 867 DFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQ----LHQLRGRVGRSHHQAY 922

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
                   K +                        P +   K +E ID +    A     
Sbjct: 923 AYLMTPHPKRM-----------------------TPDA--RKRLEAIDALEDLGAGFMLA 957

Query: 747 SIDAQ---QLSLSKKKGKAHLKS----LRKQMHLAA-DNL 778
           + D +      L   +   H+      L  +M  AA   L
Sbjct: 958 TQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLEAAVKAL 997


>gi|296136148|ref|YP_003643390.1| transcription-repair coupling factor [Thiomonas intermedia K12]
 gi|295796270|gb|ADG31060.1| transcription-repair coupling factor [Thiomonas intermedia K12]
          Length = 1160

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 88/541 (16%), Positives = 178/541 (32%), Gaps = 66/541 (12%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE--AMQRPAIVMAPNKILAAQLYSEF 213
           A+   +  +   ++V   L   GS     +A++        P +V+  +   A +L  E 
Sbjct: 6   ALRAQVPALKPGQRVSWPL-PAGSADALLLAELCAPRDDAAPWLVVTADAADAQRLLGEL 64

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           + F P   +               +P  +T      S ++ +   R +   ++  +   +
Sbjct: 65  QWFAPQLRIGL-------------LPDWETLPYDSFSPHQDLISERLATLWAIHNQQIDV 111

Query: 274 VVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           V++  +  I  +   E  +      + G+++ +  L + LV   Y      +  G + V 
Sbjct: 112 VIAPANTAIQRLAPPEFLAAYTFDFRQGEALNEAALRAQLVLAGYNHVSQVMAPGEYAVR 171

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  I++ P     V +RV +FG+ I+ I  F P T + +  V+ +++     +       
Sbjct: 172 GGLIDLHPM-GSPVPYRVDLFGDTIDAIQAFDPDTQRSLYPVKEVRLLPGREFPLDDAAQ 230

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
                      + R  E+ +              +   + + +  +   IE Y       
Sbjct: 231 KR--------FRARWREVFEGD---------PSRSPLYKDMASGVAGPGIEYYLPLFF-- 271

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS-CMDNR 511
              E   TL +Y+ E + + +     T  Q       + HR   L  +    P+   D  
Sbjct: 272 ---EQTATLPDYLGERTRVVLHGDISTAIQKFWADTQERHR---LLRHDPERPALAPDQL 325

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVED 570
            L  E +         ++  P +            Q  +PT    P +   R A   +  
Sbjct: 326 FLSEEAFFSRIKPLAQLALRPKAD---------APQTDKPTSAELPDISADRRATRPLAR 376

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +     Q  R LL   +    E L E L E  +  +            E   +   
Sbjct: 377 LAQWLEEGRPQHRRALLLAESAGRRETLRELLQESGLSAQP----------AESWDEFVQ 426

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G     + +  L  G  +P   L  + +   E F  +     +     A NV++ +   A
Sbjct: 427 GTTGFALAVGPLARGFALPADRLAVLTET--ELFALNPAQRRRRKQEQASNVDALIHDLA 484

Query: 691 D 691
           +
Sbjct: 485 E 485



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 79/195 (40%), Gaps = 20/195 (10%)

Query: 528 VSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
           ++ATP    L    +G+    +I   P   +     +RS    V  + + I    ++G +
Sbjct: 763 LTATPIPRTLGMALEGLRDLSVIATAPQKRLAIKTFVRSESGAV--MREAILREIKRGGQ 820

Query: 585 ILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +          E     L E + E  I +   H ++   +   ++RD    +F++L+   
Sbjct: 821 VYFLHNEVETIENRRRQLEELVPEARIEIA--HGQMHERDLERVMRDFHAQRFNILLCTT 878

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +S+   
Sbjct: 879 IIETGIDVPSANTIVMARADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVPDVQSLTK- 933

Query: 701 IDETTRRRE--KQLE 713
             + ++R E  +Q+E
Sbjct: 934 --QASQRLEAIQQME 946


>gi|226943575|ref|YP_002798648.1| transcription-repair coupling factor [Azotobacter vinelandii DJ]
 gi|226718502|gb|ACO77673.1| transcription-repair coupling factor [Azotobacter vinelandii DJ]
          Length = 1149

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 116/306 (37%), Gaps = 41/306 (13%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           +R  +++  + + A +L  + + F P   V  F             P  +T      S +
Sbjct: 39  KRFTLLLTADSLSAERLEQDLRFFAPELPVLQF-------------PDWETLPYDLFSPH 85

Query: 253 EQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           + I   R ++   L E N   +VV   + ++ +          + L +G  ++ +++   
Sbjct: 86  QDIVSQRIASLYRLPELNHGVLVVPITTALHRLAPKPFLLGSSLVLDVGQRLDVEQMRQR 145

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           L    Y+  +     G F V G  I++FP   E   +R+ +F ++IE +  F P T + I
Sbjct: 146 LEAAGYRCVETVYEHGEFAVRGALIDLFPMGSE-RPYRIDLFDDEIETLRTFDPETQRSI 204

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
             VE++++     +   +     A+   +   + R               ++ R     +
Sbjct: 205 DKVESVRLLPAREFPLRKE----AVAAFRARFRERFD-------------VDFRRCPIYQ 247

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD- 490
            L +  +   IE Y          E   TLF+Y+P  + +F   S   I Q +  +  D 
Sbjct: 248 DLASGITPAGIEYYLPLFF-----EETATLFDYLPSTTQVF---SLPGIEQAAEHFWSDV 299

Query: 491 FHRKAT 496
            +R   
Sbjct: 300 RNRYEE 305



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 67/180 (37%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V       Q   + + +     +G 
Sbjct: 753 ILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSVRTFVMEQQNTLIREALLRELLRGG 812

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +  E    +L E + E  I +   H +++  E  +++ D    +F+VLV  
Sbjct: 813 QVYYLHNEVKTIEKCARELAELVPEARIAIG--HGQMRERELEQVMGDFYHKRFNVLVAS 870

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K +  
Sbjct: 871 TIIETGIDVPSANTIVIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPRKQMTE 926



 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 4/98 (4%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQL-LKGIHSREKVQLLLGVTGSGKTFT--- 184
           ++  + + D   F     +  + DQ AAI  +    +  R   +L+ G  G GKT     
Sbjct: 583 FAFKDPATDYETFSASFPFEETPDQQAAIDAVRTDMLAPRPMDRLICGDVGFGKTEVAMR 642

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            A +     R   V+ P  +LA Q Y+ F++ F    V
Sbjct: 643 AAFIAVHSGRQVAVLVPTTLLAQQHYNSFRDRFADWPV 680


>gi|333026450|ref|ZP_08454514.1| putative transcriptional-repair coupling factor [Streptomyces sp.
           Tu6071]
 gi|332746302|gb|EGJ76743.1| putative transcriptional-repair coupling factor [Streptomyces sp.
           Tu6071]
          Length = 1181

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 115/287 (40%), Gaps = 19/287 (6%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+A+ +K      + Q  +    + + F +A +    +R  + +      A  L +  +
Sbjct: 17  PALAEAVKAAGDGHRTQADVVGPPAARPFVVAALAREARRTVLAVTATGREAEDLAAALR 76

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
              P   V  F S+ +    E   PR+DT   + +     + R+ H            +V
Sbjct: 77  TLIPTEGVVEFPSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPEADDPEAGPVSVV 131

Query: 275 VSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           V+ +  +      G+G +E  +     L+ G SV+ +E++ +L    Y R ++   RG F
Sbjct: 132 VAPIRSVLQPQVKGLGDLEPVA-----LRQGQSVDLQEIVEALAAAAYARVELVEKRGEF 186

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTP 388
            V G  +++FP   E+   RV  +G+++EE+  F     + +   E  +        +  
Sbjct: 187 AVRGGILDVFPP-TEEHPLRVEFWGDEVEEVRYFKVADQRSLEIAEHGLWAPPCRELLLT 245

Query: 389 RPTLNTAMKYIKE--ELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
                 A    +E  EL   L ++ +   +   + L   +  D+E+L
Sbjct: 246 EEVRRRAAVLAEEHPELHELLGKIAEGIAVEGMESLAPVLVDDMELL 292


>gi|50120752|ref|YP_049919.1| transcription-repair coupling factor [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611278|emb|CAG74725.1| transcription-repair coupling factor [Pectobacterium atrosepticum
           SCRI1043]
          Length = 1149

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 62/311 (19%), Positives = 122/311 (39%), Gaps = 38/311 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           +  +   Q LLG +TG+      A++IE      +++AP+   A +L  E + F      
Sbjct: 9   LPPKAGEQRLLGELTGAACAVECAEIIERHAGLVVLIAPDMQNALRLRDEIQQFTN---- 64

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                     Q    +P  +T      S +++I   R S    L      +++  V+ + 
Sbjct: 65  ----------QHVTTLPDWETLPYDSFSPHQEIISTRLSTLYQLPNMTRGVLILPVNTLM 114

Query: 283 GIGSVESYSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                 S+     + LK G  + + +L S L +  Y+  D  +  G +   G  +++FP 
Sbjct: 115 QRVCPHSFLHGHALVLKKGQRLSRDKLRSQLEQAGYRSVDQVMEHGEYATRGALLDLFPM 174

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E+  +R+  F ++I+ +  F   T + +  V  I +     +    PT  TA++  + 
Sbjct: 175 GSEE-PYRIDFFDDEIDSLRLFDVDTQRTLNEVPHINLLPAHEF----PTDKTAIELFRS 229

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + + +           E +R  + I    + +        IE +          EP P+L
Sbjct: 230 QWREQ----------FEVRRDAEHI---YQQVSKGVWPAGIEYWQPLFFS----EPLPSL 272

Query: 462 FEYIPEDSLLF 472
           F Y P ++L+ 
Sbjct: 273 FSYFPSNTLIV 283



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     +  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDNLM--VREAILRETLR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E  T+ L E     R    H +++  E   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKATQRLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAM 922


>gi|253688855|ref|YP_003018045.1| transcription-repair coupling factor [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755433|gb|ACT13509.1| transcription-repair coupling factor [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 1150

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 123/311 (39%), Gaps = 38/311 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + S+   Q LLG +TG+      A++IE      +++AP+   A +L  E + F      
Sbjct: 10  LPSKAGEQRLLGQLTGAACAVECAEIIERHAGLVVLIAPDMQNALRLRDEIQQFTD---- 65

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                     Q    +P  +T      S +++I   R S    L      +++  V+ + 
Sbjct: 66  ----------QHVTTLPDWETLPYDSFSPHQEIISTRLSTLYQLPNMTRGVLILPVNTLM 115

Query: 283 GIGSVESYSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                 S+     + LK G  + + +L S L +  Y+  D  +  G +   G  +++FP 
Sbjct: 116 QRVCPHSFLHGHALVLKKGQRLSRDKLRSQLEQAGYRSVDQVMEHGEYATRGALLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E+  +R+  F ++I+ +  F   T + +  V  I +     +    PT  TA++  + 
Sbjct: 176 GSEE-PYRIDFFDDEIDSLRLFDVDTQRTLNEVPHINLLPAHEF----PTDKTAIELFRS 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + + +           E +R  + I    + +        IE +          EP P+L
Sbjct: 231 QWREQ----------FEVRRDAEHI---YQQVSKGVWPAGIEYWQPLFFS----EPLPSL 273

Query: 462 FEYIPEDSLLF 472
           F Y P ++L+ 
Sbjct: 274 FSYFPNNTLIV 284



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + I     +
Sbjct: 752 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDNLV--VREAILREILR 809

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E  T+ L E     R    H +++  E   ++ D    +F+VLV  
Sbjct: 810 GGQVYYLYNDVENIEKATQRLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 869

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 870 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 923


>gi|124025758|ref|YP_001014874.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           str. NATL1A]
 gi|123960826|gb|ABM75609.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
           str. NATL1A]
          Length = 1167

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 49/341 (14%), Positives = 123/341 (36%), Gaps = 40/341 (11%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +L++  +  E++  L G + + K      + +   +  +V+ P    A + Y   K+   
Sbjct: 18  ELIERTNREERL-TLTGASRTAKALITTSLAKNESKRLLVIVPTLEEATRWYPLVKDCGW 76

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
                Y  S    Y  E     ++    +   +++ ++         L +  +  ++++ 
Sbjct: 77  TKTCLYPTSEVSPY--ETTQVTSEIIWGQLQVLSDILE---------LKDDENIAIIATE 125

Query: 279 SCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             +   +   E   +  ++L +GD +   +L   L +  Y + +     GT+   GD I+
Sbjct: 126 RSLQPHLPPFEYLKEKCIKLNVGDEINLSDLSLKLSESGYIKSNNIDQEGTWTRRGDIID 185

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           I+P   E +  R+ +FG+ +++I EF P++ + +  +  + I                  
Sbjct: 186 IYPVSSE-LPIRLELFGDLLDKIKEFDPISQRSLDQINNVCITPTGFDPLI--------- 235

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
                            +L+     +    +  +      +   +++  +YL      + 
Sbjct: 236 ---------------INKLISTDNKDISSLFTNDEFSELVNSNKLDSAKKYLG--VAFDK 278

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
           P +L +Y+ + + + VDE    I      Y         + 
Sbjct: 279 PSSLLDYLDDKTFIVVDERLQGISHGKAWYNIVNENYTDVI 319



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 19/196 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E +   I+   
Sbjct: 771 VLTLSATPIPRTLYMSLSGVREMSLITT----PPPLRRPIKTHLAPLDNEIIRSAISQEI 826

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G +I   V   +  ED+ E L      V+ +  H +++       +     G+ D+L+
Sbjct: 827 DRGGQIFYIVPRIKGIEDVAEKLKIMIPNVKLLIAHGQMEEGALENAMLAFNAGEADILL 886

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I D+ K G L     L   +GR+    ++ +   +D      
Sbjct: 887 CTTIVESGLDIPRVNTILIEDSHKFG-LSQLYQLRGRVGRSGVQAHAWLFYPSDEK---- 941

Query: 698 QLAIDETTRRREKQLE 713
              ++ET+R+R K ++
Sbjct: 942 ---LNETSRQRLKAIK 954


>gi|117621017|ref|YP_856534.1| transcription-repair coupling factor [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562424|gb|ABK39372.1| transcription-repair coupling factor [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 1154

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 120/336 (35%), Gaps = 38/336 (11%)

Query: 163 GIHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
            + ++   +L LG +TGS  +   A++ +   RP +++  +   A +L  E +       
Sbjct: 8   ALPAKAGQKLTLGQLTGSSLSLMAARLTQEAHRPVLLVTADTPSALRLEQELQYLLADTG 67

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
                       P    P  +T      S ++ I   R      L + +  +++  +S +
Sbjct: 68  C-----------PVLLFPDWETLPYDTFSPHQDIISQRLETLYKLPQMSSGVLIVPISTL 116

Query: 282 Y-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
                      +  + +K G  +  ++L + L +  Y   +  +  G F   G  +++FP
Sbjct: 117 MLRTAPRVYLDKYSLMVKSGQRLNLQQLRARLAEAGYVAVEQVLEHGEFAARGSLLDLFP 176

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
                  +R+  F ++++ I  F P T +    V+++ +     +    PT   A++  +
Sbjct: 177 MGSSS-PYRIDFFDDEVDSIRPFDPETQRSSEPVKSVSLLPAREF----PTDEGAIELFR 231

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
            + + +      EG +              + +        IE Y          +   +
Sbjct: 232 GQYREQFEISRAEGSV-------------YQEVSKGRWPAGIEYYLPLFF-----QQTAS 273

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           LF+++P+++LL         P     +     R   
Sbjct: 274 LFDHLPDNTLLLT--VGEIYPAAQRFWNDIAQRYED 307



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 65/180 (36%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA-QQGL 583
            + ++ATP    L      + +  I  T            R Q   V  E  L   ++G 
Sbjct: 757 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAIKTFVRQQEPAVTREAVLRELKRGG 816

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E    DL E + E  I +   H +++  E   ++ D    +F++LV  
Sbjct: 817 QVYYLHNDVESIEKCAADLAELVPEARIGIA--HGQMRERELERVMSDFYHQRFNLLVCT 874

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K +  
Sbjct: 875 TIIETGIDVPSANTIIMDRADHLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKLMTK 930


>gi|182438215|ref|YP_001825934.1| putative transcriptional-repair coupling factor [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466731|dbj|BAG21251.1| putative transcriptional-repair coupling factor [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 1177

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 81/557 (14%), Positives = 169/557 (30%), Gaps = 76/557 (13%)

Query: 155 AAIAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
            A+A+ +K      +  + L+G  G  + F +A +     R  + +      A  L +  
Sbjct: 14  PALAEAVKAAGDGHRAHVDLVGPPG-ARPFAVAALARQTGRTVLAVTATGREAEDLAAAL 72

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           +   P + +  + S+ +    E   PR+DT   + +     + R+ H            +
Sbjct: 73  RTLLPPDTIAEYPSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPRADDPETGPVSV 127

Query: 274 VVSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           VV+ +  +      G+G +E  +     L  G S +  E++ +L    Y R ++   RG 
Sbjct: 128 VVAPIRSVLQPQVKGLGELEPVA-----LAGGQSADLGEVVDALAAAAYSRVELVEKRGE 182

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVT 387
           F V G  +++FP   E+   RV  +G+++EEI  F     + +      +        + 
Sbjct: 183 FAVRGGILDVFPP-TEEHPLRVEFWGDEVEEIRYFKIADQRSLEVAAHGLWAPPCRELLL 241

Query: 388 PRPTLNTAMKYIKE--ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
                  A    +   EL   L +                       +    + + +E+ 
Sbjct: 242 TDEVRERAAALAEAHPELGELLGK-----------------------IAEGIAVEGMESL 278

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYGF 502
           +  L           L + +PED++  V +          +    +         +  G 
Sbjct: 279 APVLVDEMEL-----LLDVLPEDAMAIVCDPERVRTRAADLVATSQEFLQASWAASAGGG 333

Query: 503 RLP---SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
             P          +            +  S +P + +        ++  +          
Sbjct: 334 EAPIDVGAASLWGIADVRDRARELDMMWWSISPFAADAADHDEDTLQLSMHAPEAY---- 389

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
                R        +       G R +     + +A    E L    I  R      +  
Sbjct: 390 -----RGDTARALADTKGWLADGWRTVYVTEGQGLANRTVEVLSGEGIAARLTPDLTEVT 444

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
             +            V V    + +G   P   L  + + D  G   +   L +   R  
Sbjct: 445 PSL------------VHVSCGAIEQGFVDPALKLAVLTETDLTGQRTATKDLGRMPARRR 492

Query: 680 RNVNSKVILYADTITKS 696
           + ++   +   D I   
Sbjct: 493 KTIDPLTLEVGDYIVHE 509



 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 69/202 (34%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD-EINLAAQQGL 583
            + +SATP    LE     I E     + +  PP E     T V    + +I  A ++ L
Sbjct: 778 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEEKQIGAAVRREL 833

Query: 584 ----RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
               ++          +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 834 LREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSEAALEQVVVDFWEKKFDVLV 893

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R  +     +     K  
Sbjct: 894 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRDRGYAYFLYPPEKP- 948

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 949 ---LTETAHERLATIAQHTEMG 967


>gi|120405727|ref|YP_955556.1| transcription-repair coupling factor [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958545|gb|ABM15550.1| transcription-repair coupling factor [Mycobacterium vanbaalenii
           PYR-1]
          Length = 1212

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 93/524 (17%), Positives = 170/524 (32%), Gaps = 69/524 (13%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+ ++ +    R     L+G   S + F  + + +      +V+      A  L +E +
Sbjct: 24  PALQEIARRAGDRPADLNLVGPA-SARVFVASALAQ--PGLLLVVTATGREADDLTAELR 80

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
             F   AV  F S+ +    E   P  DT   +       + R+ H     L      IV
Sbjct: 81  GVFGD-AVALFPSW-ETLPHERLSPGVDTVGARMM----LLRRLTHPDDARL-GPPLRIV 133

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           V++   +    + +      V L +G   +   +++ LV   Y R D+   RG F V G 
Sbjct: 134 VTTARSLLQPMAPDLAEVDPVTLTVGGEADFDAVVARLVDLAYSRVDMVGKRGEFAVRGG 193

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR--NVETIKIYANSHYVTPRPTL 392
            +++FP   E    RV  +G+++ E+  F     + I    ++T+        +      
Sbjct: 194 ILDVFPPTAE-HPVRVEFWGDEVSEMRMFSVADQRSIPEIEIDTLIAVPCRELLLTAEVR 252

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
           + A       L      LE          L          L        +E     L   
Sbjct: 253 DRA-----AALASEHPVLENSVTGSVPDMLA--------KLAEGIPVDGMEALLPLLRPS 299

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
           +      TL +++PE + L V +      + + + +          E  +   +   + P
Sbjct: 300 DF----ATLPDHLPEGTPLLVCDPEKVRTRAADLIKTGRE----FLEASWSTAAVGGDVP 351

Query: 513 LRFEEWNCLRPTTIVVSATPGS-------WELEQCQGIIVEQIIRPTGLVDPPVEIRS-- 563
           +  E    +        A   +       W L Q      E            ++IR   
Sbjct: 352 IDIEAL-GVSGYVGYGDARDAARAGGHPWWTLSQLDSGAGES---------TALDIRPAP 401

Query: 564 -ARTQ---VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            AR Q   +++++  +      G   ++       A  + E L E +I    +       
Sbjct: 402 SARGQQHNLDEIFAMLRAHVATGGFGVVVTPGSGTAMRVVEQLSESDIPATVLEPGAV-- 459

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                      G+  V V    L +G+ IP   LV I + D  G
Sbjct: 460 ----------PGEGVVGVIKGPLHDGVVIPGANLVVITETDLTG 493



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 68/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E     T V   +D      L  + 
Sbjct: 795 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGPHDDKQVAAALRREM 850

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +        R  +     + +     R +  H ++   +  + +      ++D+LV
Sbjct: 851 LRDGQAFYIHNRVRTIDSAAAKVRQLVPEARVVVAHGQMPEEQLEKTVEGFWNREYDILV 910

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +        
Sbjct: 911 CTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPPEVP- 965

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N +  
Sbjct: 966 ---LTETAYDRLATIAQNNELG 984


>gi|331090628|ref|ZP_08339479.1| hypothetical protein HMPREF9477_00122 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401068|gb|EGG80663.1| hypothetical protein HMPREF9477_00122 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 1112

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 100/250 (40%), Gaps = 20/250 (8%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
             + G   S KT  M  + +      I ++     A Q+Y E+K  F    V Y+     
Sbjct: 28  IQIAGCVNSQKTHLMYALGDDSTYRIIAVSSEAK-AKQIYEEYK--FLDEKVYYY----- 79

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC-IYGIGSVES 289
                   P  D    +     + + + R    +++L      V++     +  +  +  
Sbjct: 80  --------PPKDLLFYQADLRGKALVKQRLEVIQAVLTEEKVTVITEFDGFMDSLLPLPK 131

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
             + I  LK+GD+V+   L   +    Y R+      G F V G  I+I+P   E+V  R
Sbjct: 132 IQERIFTLKVGDTVDFDSLKEKVAALGYDREVQIDGMGQFAVRGGIIDIYP-LTEEVPIR 190

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           +  + ++I+ I  F   + + I N+E I IY  + +        + ++Y   E    ++ 
Sbjct: 191 IEFWDDEIDSIRTFDVESQRSIENLEEIVIYPATDFPEEEGKRVSFLEYFPVE--ETMVF 248

Query: 410 LEKEGRLLEA 419
           L++  RL+E 
Sbjct: 249 LDEPARLMEK 258



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 74/186 (39%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      I +  ++    +   P++        E V + I     +  
Sbjct: 715 VLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDRIPIQTYVMEYNDEMVREAIQRELSRQG 774

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  E++T+ +          Y H ++   +  +I+ D   G+ DVLV   +
Sbjct: 775 QVYYVYNKVKDIEEITDRIQSLVPEAAVTYAHGQMSEHQLEKIMYDFINGEIDVLVSTTI 834

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-- 699
           +  GLDI     + I +ADK G L     L   +GR+ R   + ++   D + K +    
Sbjct: 835 IETGLDISNANTMIIHEADKLG-LSQLYQLRGRVGRSNRMAYAFMLYKRDKLLKEVAEKR 893

Query: 700 --AIDE 703
             AI E
Sbjct: 894 LSAIRE 899


>gi|330829926|ref|YP_004392878.1| transcription-repair coupling factor [Aeromonas veronii B565]
 gi|328805062|gb|AEB50261.1| Transcription-repair coupling factor [Aeromonas veronii B565]
          Length = 1157

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 114/312 (36%), Gaps = 31/312 (9%)

Query: 163 GIHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
            + ++   ++ LG + GS  +   A++    + P +++  +   A +L  E +       
Sbjct: 7   ALPAKAGQKITLGQLVGSSLSLIAARLTSEAKGPVLLITADTPSALRLEQELQYLLADKQ 66

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSC 280
           +       D   P    P  +T      S ++ I   R      L +     ++V   + 
Sbjct: 67  LA------DQSAPVLLFPDWETLPYDTFSPHQDIISQRLETLYKLPQMSKGVLIVPISTL 120

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           +          +  + +K G  +  ++L   L +  Y   D  +  G F   G  +++FP
Sbjct: 121 MLRCAPRVYLDKYSLMVKAGQRLNLQQLRGRLAEAGYVAVDQVLEHGEFAARGSLLDLFP 180

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
                  +R+  F ++++ I  F P T +    V+T+ +     Y    PT   A++  +
Sbjct: 181 MGSSS-PYRIDFFDDEVDSIRPFDPETQRSSEPVKTVSLLPAREY----PTDEAAIELFR 235

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
            + + +      EG +              + +        IE Y      +       +
Sbjct: 236 GQFREQFELSRAEGSV-------------YQEVSKGRWPAGIEYYLPLFFNQT-----AS 277

Query: 461 LFEYIPEDSLLF 472
           LF+Y+PE++LL 
Sbjct: 278 LFDYLPEETLLL 289



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         ++    + +   V + +    ++G 
Sbjct: 761 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAIKTFVRQHEPAVVREAVLRELKRGG 820

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E    DL E + E  I +   H +++  +   I+ D    +F++LV  
Sbjct: 821 QVYYLHNDVESIEKCAADLAELVPEARIGIA--HGQMRERDLERIMSDFYHQRFNLLVCT 878

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K +  
Sbjct: 879 TIIETGIDVPSANTIIMDRADHLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKLMTK 934


>gi|86606417|ref|YP_475180.1| transcription-repair coupling factor [Synechococcus sp. JA-3-3Ab]
 gi|86554959|gb|ABC99917.1| transcription-repair coupling factor [Synechococcus sp. JA-3-3Ab]
          Length = 1156

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 75/509 (14%), Positives = 163/509 (32%), Gaps = 70/509 (13%)

Query: 160 LLKGIHSREKVQLLLGVTGSG---KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           L++ + +R + Q    + G+G   K    + + +   R  +V+      A +  ++ +  
Sbjct: 15  LMQELAARLRSQRQADLQGAGRIPKGLIASALAQQEGRSLLVVTATLEEAGRWTAQLEGM 74

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              +   Y  S    Y+P    P  +    +   + +            L  +    +V+
Sbjct: 75  GWESVQLYPTSEASPYEPFDLEP--ELVWGQFQVLAD-----------GLQGKKGMAIVA 121

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +   +   +   E +    ++L+ G  +  ++L   L +  Y+R  +    G +   GD 
Sbjct: 122 TERALQPHLPPPEVFRAFCLKLEPGLEMSPQQLGQQLARLGYRRVSLVESEGEWSQRGDI 181

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +++FP   E    R+  FGN++E + EF P++ +    +  + +    +     P L   
Sbjct: 182 LDVFPVACE-WPVRLEWFGNELERLREFDPVSQRSQDGIPYVWLTPTGYGPILWPALQEK 240

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              + + L+ +L +                              + +  +   L      
Sbjct: 241 ADQLSQGLRQQLEQSPTP-------------------------PEGLRRFLGLLY----- 270

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
            PP  L  Y+   +L+ +DE                 +          L        L  
Sbjct: 271 TPPANLLSYLDPTTLILIDEPEQCQAHSQQWLYHAQEQWKQAQVAEPALQPFHRPFDLHA 330

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            +W+   P  +  +  P   E E    +                 + +   Q   +   +
Sbjct: 331 PDWDP-FPCLLARTFAPAG-EAEAALDLKSRA-------------VPAIPHQFGSLAKTL 375

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +Q L++ +          L   L E +   +Y+       +   I R L+      
Sbjct: 376 REYRKQQLQVWILSAQPSRTVAL---LQEHDCPAQYV---PNPKDFPAIERQLQSYTPVA 429

Query: 636 LVGINLLR-EGLDIPECGLVAILDADKEG 663
           L   +L   EG  +P  G V + D +  G
Sbjct: 430 LKYSSLADLEGFLLPTLGWVVLTDREFFG 458



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 73/197 (37%), Gaps = 21/197 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      + E     + +  PP   R  +T +     E +   I    
Sbjct: 757 VLTLTATPIPRTLYMALSGLREM----SLIQTPPPSRRPIKTHLSPYNPEVIRTAIRQEL 812

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      E+ +  L E     R+   H ++   E    +     G+ D+LV
Sbjct: 813 DRGGQVFYVVNRIEGIEETSAKLREWVPGARIAIAHGQMPEGELEATMLAFNNGEIDILV 872

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I +A + G  +    L   +GRA    ++ +    D I    
Sbjct: 873 CTTIIESGLDIPRVNTILIENAQEFGLAQ-LYQLRGRVGRAGIQAHAWLFYREDGI---- 927

Query: 698 QLAIDETTRRR--EKQL 712
              + E  R+R    Q 
Sbjct: 928 ---LTEEARKRLQAIQE 941



 Score = 38.2 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI-NLLREGL 646
           T+LT++    L E      I+V  ++      E+ EI+  L+ G+ DV+VG   LL + +
Sbjct: 665 TILTQQHYHTLKERFAPYPIQVGLLNRFRTPEEKKEILARLKSGELDVIVGTHQLLGKDV 724

Query: 647 DIPECGLVAILDADKEG 663
              + GL+ I +  + G
Sbjct: 725 QFRDLGLLVIDEEQRFG 741


>gi|217973128|ref|YP_002357879.1| transcription-repair coupling factor [Shewanella baltica OS223]
 gi|217498263|gb|ACK46456.1| transcription-repair coupling factor [Shewanella baltica OS223]
          Length = 1162

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 60/334 (17%), Positives = 128/334 (38%), Gaps = 36/334 (10%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            + +  ++Q L  V G  +  T+A +    +   +V+  +   A  L  E         +
Sbjct: 11  AVKNGNQIQTLSTVGGVCQAVTLASLARQHKGTTLVVTSDTPSALSLELELSYLLSKTGI 70

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCI 281
           +               P  +T      S ++ +   R      L +   + ++V   + +
Sbjct: 71  K-----------VRLFPDRETLPYDSFSPHQDLISQRLETLSQLSQIEQNIVIVPVTTLM 119

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +      S  +  LK GDS +  ++   L    Y   +     G F + G  ++IFP+
Sbjct: 120 MRLPPKAYLSANVFVLKKGDSYKLHDVRQHLTDTGYHSVEQVYEHGEFAIRGSILDIFPT 179

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
            + ++  R+ +F  ++E I  F P T + ++ V++I++     +    PT ++A++  ++
Sbjct: 180 GM-NMPLRIELFDEEVETIRHFDPETQRSLQPVDSIRLLPAKEF----PTDSSAIEGFRQ 234

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             + R   + K     E + + Q ++ +L           IENY          +   TL
Sbjct: 235 RYRRRFEVIVK-----EPESVYQLVSRNL-------MPAGIENYLPLFF-----DDTATL 277

Query: 462 FEYIPEDSLLFV--DESHVTIPQISGMYRGDFHR 493
           F+Y+P+D+ L    D        +  +      R
Sbjct: 278 FDYLPKDTQLVTLGDIEKSARAHLQEVEHRYQDR 311



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 87/280 (31%), Gaps = 70/280 (25%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPT-----------GLVDPPVEIRSA-------RT 566
            + ++ATP    L      + +  I  T                P  +R A         
Sbjct: 762 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGG 821

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           QV  +++ +    +    I+             + L E  + V   H +++  +   ++ 
Sbjct: 822 QVYYLHNNVESIEKCAQGII-------------DLLPEARVVVA--HGQMRERDLERVMS 866

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D    +F+VLV   ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +   
Sbjct: 867 DFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQ----LHQLRGRVGRSHHQAY 922

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
                   K +                        P +   K +E ID +    A     
Sbjct: 923 AYLMTPHPKRM-----------------------TPDA--RKRLEAIDALEDLGAGFMLA 957

Query: 747 SIDAQ---QLSLSKKKGKAHLKS----LRKQMHLAA-DNL 778
           + D +      L   +   H+      L  +M  AA   L
Sbjct: 958 TQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLEAAVKAL 997


>gi|269125277|ref|YP_003298647.1| transcription-repair coupling factor [Thermomonospora curvata DSM
           43183]
 gi|268310235|gb|ACY96609.1| transcription-repair coupling factor [Thermomonospora curvata DSM
           43183]
          Length = 1168

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 90/497 (18%), Positives = 153/497 (30%), Gaps = 80/497 (16%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            + +      A  L +    F   + V +F ++ +    E   PR+DT   + +     +
Sbjct: 52  VLAVTATGREAEDLTAALGCFLDPHRVAHFPAW-ETLPHERLSPRSDTVGRRLAV----L 106

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLS 310
            R+ H     +      +VV+ V  +      G+G +E        L+ GD  + +E++ 
Sbjct: 107 RRLAHPDPDDVAAGPLDVVVTPVRAVLQPIVSGLGDLEPVR-----LRTGDEADLEEVVR 161

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            L    Y+R D+   RG   V G  +++FP   E+   RV  +G+ +EEI  F     + 
Sbjct: 162 RLADAGYQRVDLVEKRGELAVRGGILDVFPP-TEEHPLRVEFWGDAVEEIRYFKAADQRS 220

Query: 371 IR-NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD 429
           +    + +                 A      EL  R   LE+                 
Sbjct: 221 LEVAQDGLWAPPCRELPLNAAVRQRA-----RELAERHPALEEV---------------- 259

Query: 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG 489
           L  +    + + +E +S  L  R        L E +PE S L V E      +   + R 
Sbjct: 260 LLRIADGEAVEGMEAFSPVLADRMQL-----LVELLPEGSSLLVCEPERIRTRAHELVRT 314

Query: 490 DFHRKA-TLAEYGFRLPSCMDNRPLRFEEWNCLRPTT--------IVVSATPGSWELEQC 540
                  +         + +D     F +   +R            V + TP   +  Q 
Sbjct: 315 SQEFLEASWVNAAAGGQAPIDLGAAAFRDLAEVREQAAALGLARWTVTALTPEEEDAVQL 374

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
                EQ                 R     +  +I     +  R++L       A  L E
Sbjct: 375 DVHPAEQY----------------RGDTARMVGDIKRWVDERWRVVLVTAGHGPAARLAE 418

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
            L E  +  R                        V V    L  GL  P   L  + + D
Sbjct: 419 MLGEEGLGARLADLPEPPEP------------GVVHVTTGTLGGGLVWPAARLALLTETD 466

Query: 661 KEGFLRSKTSLIQTIGR 677
             G   S   + +   R
Sbjct: 467 LSGQRASTRDMRRMPSR 483



 Score = 46.6 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 72/213 (33%), Gaps = 21/213 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQVED 570
           EE   LR     + +SATP    LE     I E     + ++ PP E           +D
Sbjct: 754 EELKRLRTQVDVLAMSATPIPRTLEMGLTGIREM----STILTPPEERHPILTFVGPYDD 809

Query: 571 VYDEINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIR 626
                 +  +  +  ++       R  + +   L E     R    H ++   +  +++ 
Sbjct: 810 KQIAAAIRRELLREGQVFFVHNRVRSIDRVAAKLKELVPEARIATAHGQMNEHQLEKVMV 869

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D     +DVLV   ++  GLDIP    + +  AD  G  +    L Q  GR  R      
Sbjct: 870 DFWEKNYDVLVATTIVESGLDIPNANTLIVDRADTYGLSQ----LHQLRGRVGRGRERGY 925

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
             +           + ET   R   +  + +  
Sbjct: 926 AYFLYPPESP----LSETAHERLATIAQHTEMG 954


>gi|332285001|ref|YP_004416912.1| transcription-repair coupling factor [Pusillimonas sp. T7-7]
 gi|330428954|gb|AEC20288.1| transcription-repair coupling factor [Pusillimonas sp. T7-7]
          Length = 1158

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 75/455 (16%), Positives = 148/455 (32%), Gaps = 64/455 (14%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             +L  +   ++    L   GSG  + +A +  A ++  +V+  + + A +L  E   F 
Sbjct: 19  KTVLAALKPGQRHIQAL-PPGSGDAWWLADLARASRKTVVVLCADPLAAQRLADEVLLFA 77

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-ERNDCIVVS 276
           P   V               +P  +T      S ++ +   R     +L+ E+ D + V 
Sbjct: 78  PDLRV-------------RQLPDWETLPYDGFSPHQDLISERLRTLHALMQEQVDVLTVP 124

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
             + +Y +   E  +      + GD +++  L   L +  Y         G F + G  I
Sbjct: 125 ITTALYRLAPPEFLAAYTFAFRQGDKLDEDGLRKQLTRANYSHVTQVTAPGEFCIRGGLI 184

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++FP     + +R+ +F ++IE I  F   T + +  V+ +++     +     +     
Sbjct: 185 DLFPMGSA-LPYRLDLFDDEIESIRSFDIDTQRSLYPVKDVQLLPGREFPMDEASRTQF- 242

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
                          +      ++ L        + +    +   IE Y           
Sbjct: 243 ----------RARFREVFEGDPSRALP------YKDIGNGIAFAGIEYYLPLFF-----S 281

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TLF+Y+PE +          I Q    +  D H +         L S  +   L  E
Sbjct: 282 QTATLFDYLPEQAFTVTLGD---IDQAIQRFAQDTHSRYQF------LKSDRERPVLPPE 332

Query: 517 EW----NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           +       L       +    S E       +  ++       DP   +RS   Q     
Sbjct: 333 QLFLDQESLFTRLKSFARLVLSSEQSHPDFQLAPKVAVARRAEDPLASLRSLLNQ----- 387

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
                    G R++L   +    E + + L E  +
Sbjct: 388 --------DGQRVVLCADSAGRRETMLQMLAEFGL 414



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 67/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L    +GI    +I         ++    R     + + +    ++G 
Sbjct: 766 VLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTFVRREDSGTIREALLRELKRGG 825

Query: 584 RILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++           +    L E + E  I V   H ++   E  E+++     +++VL+  
Sbjct: 826 QVYFLHNEVDTIHNRRARLEELVPEARIAVA--HGQMPERELEEVMKGFYQQRYNVLLCT 883

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+D+P    + I  AD+ G  +    L Q  GR  R+ +            ++
Sbjct: 884 TIIETGIDVPTANTIVIHRADRLGLAQ----LHQLRGRVGRSHHQAYAYLMTPGEDAM 937


>gi|308233919|ref|ZP_07664656.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829]
 gi|328943400|ref|ZP_08240865.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829]
 gi|327491369|gb|EGF23143.1| transcription-repair coupling factor [Atopobium vaginae DSM 15829]
          Length = 1198

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 94/527 (17%), Positives = 174/527 (33%), Gaps = 60/527 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I ++   +   +   L   ++ S + F +A    A  RP +++   +  A +       +
Sbjct: 16  IHRIWNELDQGKDCTL--NISQSARPFIVAACACAQARPILLVVSGEDAADRAARILAGW 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + V  +    D       +P +D       S + ++   R  A   L +   C+VV+
Sbjct: 74  LGPDVVFRYPDRAD-------LPWSD------KSASAEVCGTRAEALFHLAQPQRCVVVA 120

Query: 277 SVSCIYGIGSVESYSQMIVQ-LKIGDSVEQKELLSSLVKQQY---KRQDIGIIRGTFRVC 332
           S   +      ++ S    Q + IGD ++   L   LV   Y            G F V 
Sbjct: 121 SARALLRRLPPKTSSFAQQQKICIGDELDIYALARQLVLWGYVSTTVVKEVREPGYFCVH 180

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GDS+++F S  E    R+S FG++++EI +  P TGQ I + +    YA         T+
Sbjct: 181 GDSVDVF-SPCEQAPVRISFFGDEVDEIRKVVPSTGQTISSQQQAVFYAARELELSPETI 239

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
             A   + ++ +  L                      L+ +E +     ++ Y  YL   
Sbjct: 240 QCAKNKLYDKAQEDLD-----------------TERVLDQIEESVYTNELDAYLPYLYPS 282

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH---RKATLAEYGFRLPSCMD 509
                  ++ +Y+   +L+ + E           Y    H    K    +  +  P    
Sbjct: 283 T-----ASVIDYMHPSALVVLAEPRALFDDCQRAYDELMHASTEKRVSLDGLYTSP---- 333

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
              L F      +   + +S +     +     ++ EQ             IR       
Sbjct: 334 -VELDFG-----KQQRLSLS-SLARQGMRASNHVVTEQCDIAGSASKMIGRIRELLANNS 386

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH-SEVKTLERIEIIRDL 628
            V   +     +    L         ED +E+  E   +    H SE       + +   
Sbjct: 387 AVVFSVPDRGARRALQLSFTDENISFEDASEHASEHASKRAPEHESEHNQDLEAQNLPLP 446

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           R     V+   + +  G+ IP   L     +D    L +K    Q I
Sbjct: 447 RN---KVVFFADPINAGIVIPSAHLAIFSVSDLNAHLNNKKHRFQKI 490



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 73/198 (36%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    ++    G+    +I        PV +       + + D I L   +  
Sbjct: 773 VLTLSATPIPRTMQMAMSGVRDMSLILSAPAGRKPVRVHVGEWDSDLISDAIRLELARKG 832

Query: 584 RILLTVLTKRMAEDLTE--YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  +D  E  +      RV   H ++   +  E++      + DVLV   +
Sbjct: 833 QVYYVSNRVKTIDDALERVHACAPEARVGVAHGQMSPSQIEEVMLLFEEHEIDVLVATTI 892

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D P    + I D+ + G  +    L Q  GR  R        +    T+     +
Sbjct: 893 IESGIDNPHTNTLIIEDSQRLGLAQ----LYQLKGRVGRGRVQAYAYFMFPPTEP----L 944

Query: 702 DETTRRREKQLEHNKKHN 719
            E  RRR + +  +++  
Sbjct: 945 TEEARRRLEAIYEHQELG 962


>gi|126174619|ref|YP_001050768.1| transcription-repair coupling factor [Shewanella baltica OS155]
 gi|125997824|gb|ABN61899.1| transcription-repair coupling factor [Shewanella baltica OS155]
          Length = 1162

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 60/334 (17%), Positives = 128/334 (38%), Gaps = 36/334 (10%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            + +  ++Q L  V G  +  T+A +    +   +V+  +   A  L  E         +
Sbjct: 11  AVKNGNQIQTLSTVGGVCQAVTLASLARQHKGTTLVVTSDTPSALSLELELSYLLSKTGI 70

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCI 281
           +               P  +T      S ++ +   R      L +   + ++V   + +
Sbjct: 71  K-----------VRLFPDRETLPYDSFSPHQDLISQRLETLSQLSQIEQNIVIVPVTTLM 119

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +      S  +  LK GDS +  ++   L    Y   +     G F + G  ++IFP+
Sbjct: 120 MRLPPKAYLSANVFMLKKGDSYKLHDVRQHLTDTGYHSVEQVYEHGEFAIRGSILDIFPT 179

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
            + ++  R+ +F  ++E I  F P T + ++ V++I++     +    PT ++A++  ++
Sbjct: 180 GM-NMPLRIELFDEEVETIRHFDPETQRSLQPVDSIRLLPAKEF----PTDSSAIEGFRQ 234

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             + R   + K     E + + Q ++ +L           IENY          +   TL
Sbjct: 235 RYRRRFEVIVK-----EPESVYQLVSRNL-------MPAGIENYLPLFF-----DDTATL 277

Query: 462 FEYIPEDSLLFV--DESHVTIPQISGMYRGDFHR 493
           F+Y+P+D+ L    D        +  +      R
Sbjct: 278 FDYLPKDTQLVTLGDIEKSARAHLQEVEHRYQDR 311



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 87/280 (31%), Gaps = 70/280 (25%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPT-----------GLVDPPVEIRSA-------RT 566
            + ++ATP    L      + +  I  T                P  +R A         
Sbjct: 762 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGG 821

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           QV  +++ +    +    I+             + L E  + V   H +++  +   ++ 
Sbjct: 822 QVYYLHNNVESIEKCAQGII-------------DLLPEARVVVA--HGQMRERDLERVMS 866

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D    +F+VLV   ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +   
Sbjct: 867 DFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQ----LHQLRGRVGRSHHQAY 922

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
                   K +                        P +   K +E ID +    A     
Sbjct: 923 AYLMTPHPKRM-----------------------TPDA--RKRLEAIDALEDLGAGFMLA 957

Query: 747 SIDAQ---QLSLSKKKGKAHLKS----LRKQMHLAA-DNL 778
           + D +      L   +   H+      L  +M  AA   L
Sbjct: 958 TQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLEAAVKAL 997


>gi|254497711|ref|ZP_05110485.1| transcription repair coupling factor [Legionella drancourtii
           LLAP12]
 gi|254353058|gb|EET11819.1| transcription repair coupling factor [Legionella drancourtii
           LLAP12]
          Length = 1149

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 79/504 (15%), Positives = 164/504 (32%), Gaps = 63/504 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +A+  +      +++A + + A QL +E          E+F+      Q  
Sbjct: 20  LQGSSLPLALAEYCQQTPGIKLLIAQDNLCANQLQAEL---------EFFLDQQHSPQEL 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
            + P  +T    + S ++ I   R      + +  + IV++S S +   +      +Q  
Sbjct: 71  LFFPDWETLPYDQFSPHQDIISERLYTLSRIQQVTNAIVITSASTLMHRLCPPAFLNQYA 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + LK G +++     + L +  Y   +  +  G + + G  I+++P     + +R+ +F 
Sbjct: 131 LMLKEGQTLDLYAFRNQLQQSGYHSANKVLEHGEYSLRGSIIDVYPM-GSGLPFRIELFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE + +F P T + I  +  I +     +     +              +L+      
Sbjct: 190 DEIESLRKFDPETQRTIEKITQINVLPAREFPLNEQS--------------QLLFRRAFR 235

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
            L              E +        IE Y          E   T F+Y+P ++ + + 
Sbjct: 236 ELFPGNPSH---CPLYEAISEGQFPSGIEYYLPLFF-----EKTVTFFDYLPTNAKVCLI 287

Query: 475 ES-HVTIPQISGMYRGDFHRKATLAEYGFRLPSCM-DNRPLRFEEWNCLRPTTIVVSATP 532
           E+      Q        + ++          P+    N      + N      +   A+ 
Sbjct: 288 ENIQNNAEQFWQEVSERYEQRRHDVSRPILTPTACFINPTELLTKANEYEQLRLFHHAS- 346

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
                E+   I  +    P   +D   E        E + +     A    R L+ V + 
Sbjct: 347 -----EKKGAINFDIAQAPQLPIDRKTE--------EPLKNLREYCADTSRRYLIVVESA 393

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
              E L + L    I            +      D       + +    L  G ++    
Sbjct: 394 GRREVLLDLLKLSGIF----------PKVQASWHDFIHDTAPINISTGALTLGCELTANT 443

Query: 653 LVAILDADKEGFLRSKTSLIQTIG 676
            V I+++   G    + S  Q  G
Sbjct: 444 TVLIVESQLFG----EQSTPQRRG 463



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 68/176 (38%), Gaps = 11/176 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      I +  +  T            + + + V  + I     +G 
Sbjct: 754 ILSMTATPIPRTLNMAMAGIRDISLMTTPPAKRLAIKTFWQEKKDSVVREAILREILRGG 813

Query: 584 RILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T  R+ +DL   + E  +R    H +++  E   ++ +    +F+VLV  
Sbjct: 814 QVFFLHNNVETIERICQDLQTLVPEAKVRSA--HGQMRERELERVMSEFYHHRFNVLVCT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +           K
Sbjct: 872 TIIETGIDIPTANTIIIDRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPDEK 923



 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 146 DYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            +  + DQ  +I Q++  +  SR   +L+ G  G GKT      A V     +   ++ P
Sbjct: 601 PFTETVDQLQSINQIITDMQSSRPMDRLICGDVGFGKTEVAMRAAFVAVQNNKQVCILVP 660

Query: 202 NKILAAQLYSEFKNFFPHNAV 222
             +LA Q +  F++ F   AV
Sbjct: 661 TTLLAGQHFESFRDRFADFAV 681


>gi|241890049|ref|ZP_04777347.1| transcription-repair coupling factor [Gemella haemolysans ATCC
           10379]
 gi|241863671|gb|EER68055.1| transcription-repair coupling factor [Gemella haemolysans ATCC
           10379]
          Length = 1183

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 56/367 (15%), Positives = 139/367 (37%), Gaps = 31/367 (8%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
              + K   + G   + +   +    +   +  +V++ +K  A +L++            
Sbjct: 14  FEKKHKNIGIYGQNLTTRALEIYNEYKQSDKTVVVVSQSKAEAEELFA------------ 61

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
                   ++ E Y+      +++ +S +  + +       +L+     I++  +  IY 
Sbjct: 62  ----ILSDFEGETYIYPEIDILKRHTSKSNDLVQNSIKVLENLVHNIQSIIIIPIEAIYR 117

Query: 284 -IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            + +   +     ++     +   EL   LV   Y+R +   + G F   G  ++IF   
Sbjct: 118 TVKNPSDFKNNSFEINEDTVISFDELQRKLVNMGYRRVESVDVVGEFSKRGSIVDIFSPL 177

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E    R+  F ++++ +  F  +T + +  +++  IY  S +       +  ++ +  +
Sbjct: 178 SE-KPIRLDFFDDELDSMRIFDEITQRSLDRIDSAVIYPTSDFFLTSEEKDIVVERVLAK 236

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
           L       +K  +    Q +   +   +E+   TG    +E++S  +      E   ++ 
Sbjct: 237 LDD-----KKIQKDENYQEISTYLKEKVEIYRATGDFSDLESFSNLIY-----ENTYSIA 286

Query: 463 EYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLR 522
           +Y+ +D+++F D  H  + +I G+ R  F          +     +DN    FE+   L 
Sbjct: 287 DYLNDDTIVFYDNYHKILEKIEGL-REYFLTSLQEMNRSYIYQDVIDNIA--FEKIQNLD 343

Query: 523 PTTIVVS 529
                +S
Sbjct: 344 IRKYYLS 350



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 15/189 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI    +I        P++          + + +     +G 
Sbjct: 757 VLTLSATPIPRTLHMSLIGIRDLSVIETPPRERQPIQTFVTAQNKMVIKEAVMNEVNRGG 816

Query: 584 RILLTVLTKRMAEDLTEYLYER----NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          ++  +YL  +    +I + Y H  +   E   I+ D+   K+D+L+  
Sbjct: 817 QVFYVYNRVETIDE--KYLELKRLLPDINIAYAHGRMSQRELENIMTDVIDRKYDMLIST 874

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + + DAD+ G  +    L Q  GR  R+             KS   
Sbjct: 875 TIIETGIDISNVNTLIVEDADRFGLSQ----LYQLRGRVGRSSREAYAYLMYEPFKS--- 927

Query: 700 AIDETTRRR 708
            + E + +R
Sbjct: 928 -LTENSEKR 935


>gi|126657369|ref|ZP_01728528.1| transcription-repair coupling factor [Cyanothece sp. CCY0110]
 gi|126621356|gb|EAZ92068.1| transcription-repair coupling factor [Cyanothece sp. CCY0110]
          Length = 1160

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 64/340 (18%), Positives = 126/340 (37%), Gaps = 40/340 (11%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +LL  +    K   L G+    K    + + +A Q+  +V+      A +  ++ +   
Sbjct: 17  KELLDKLK-GNKELGLKGINRLPKGLISSALAQANQQNLLVICATLEEAGRWTAQLEIMG 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
                 Y  +    Y+P    P ++    +   ++     +  S T    E N+  +V++
Sbjct: 76  WKTVSFYPTTEASPYEP--LNPESEMIWGQMQVLSN----LNLSVT----ENNNYAIVTT 125

Query: 278 VSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
              +   +   ES+ +  + L+ G + + K    +LVK  Y+R ++  + G +   GD +
Sbjct: 126 EKALQPHLPPPESFHKYCLNLQTGITEKSKIFDEALVKLGYERVNLVEVEGQWSRRGDIV 185

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IFP   E V  R+  FG+++E+I EF P T + + ++E+I +   S       T+    
Sbjct: 186 DIFPVSSE-VPIRLEWFGDELEKIREFDPATQRSLDSIESILLTPVSFNTIIANTIKEND 244

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
                 L   L + EK                  E LE       ++ +     G    E
Sbjct: 245 YN----LDNYLSKEEK------------------EGLENYNYPSGMQRFL----GIAFDE 278

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
            P  + +Y+  ++L   DE                     
Sbjct: 279 -PACILDYVNLNTLCVFDEIEQCKSHSDRWLDYIEENWQD 317



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      I E  +I        P++   +R   + V   I     +G 
Sbjct: 763 VLTLTATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSRYNPDVVRTAIRNELDRGG 822

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++   V      E++   L +     R    H ++   +    +     G  D+LV   +
Sbjct: 823 QVFYVVPRVEGIEEVAAELKKMVPSARIAIGHGQMNVNDLEMTMLSFNNGDADILVCTTI 882

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + I DA K G  +    L   +GRA    ++ ++          +  +
Sbjct: 883 VESGLDIPRVNTIIIEDAQKFGLAQ-LYQLRGRVGRAGIQAHAWLLY-------PSKAQL 934

Query: 702 DETTRRR 708
            ET R+R
Sbjct: 935 TETARKR 941



 Score = 38.5 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 146 DYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVIEAM----QRPAIVMA 200
            Y P+ DQ  AI  +   +   R   +L+ G  G GKT    + I        +    +A
Sbjct: 609 PYQPTPDQLKAIQDVKIDLESDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGHKQVAFLA 668

Query: 201 PNKILAAQLYSEFKNFFPH 219
           P  IL  Q Y   K  F  
Sbjct: 669 PTTILTQQHYHTLKERFAP 687


>gi|258654637|ref|YP_003203793.1| transcription-repair coupling factor [Nakamurella multipartita DSM
           44233]
 gi|258557862|gb|ACV80804.1| transcription-repair coupling factor [Nakamurella multipartita DSM
           44233]
          Length = 1192

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 80/486 (16%), Positives = 150/486 (30%), Gaps = 58/486 (11%)

Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243
           T+A        P +++      A    +   +    + V  F S+ +    E   PR DT
Sbjct: 46  TLAAGYPDAGVPVLLVTATGREAEAAVASIGDLIGDDRVALFPSW-ETLPHERLSPRADT 104

Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303
              + ++    + R+ H            +VV+++  +    +        V L++G  V
Sbjct: 105 VGRRLAT----LRRLAHPEEHP--GGYPAVVVATIRSMIQPMAPHLGEMAPVTLRVGQEV 158

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           +  EL+  LV   Y R D+   RG   V G  ++IFP    D   RV  +G++I ++  F
Sbjct: 159 DLTELVDRLVSLAYGRVDMVEKRGEIAVRGGILDIFPP-TADHPIRVEFWGDEISDLRTF 217

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
                + +  VE +        +        A      +L  +     + G    AQ L 
Sbjct: 218 GVTDQRSLGAVEQVVAPPCREILLTAEVRERA-----AQLSAQ-----QTGDPTLAQML- 266

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
                  + L    + + +E+    L G               +D  L  +        +
Sbjct: 267 -------DNLANGITVEGMESLIPVLVG---------------DDLELLPNLVRPGTHVV 304

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
                    R A L   G    +                 ++   S       +   +  
Sbjct: 305 LADPERIRTRAADLVRTGEEFLAASWMAAATGGRAPIDLGSSAYRSLAEVLDVVRDAELP 364

Query: 544 IVEQIIRPTGLVDPPVEIRSA------RTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           I       +G      +  +       R ++     +       G   ++ V     A  
Sbjct: 365 IWRVASFESGEALQESDSPAVLGAPAYRGELASAIHDARERQAAGGSTVVVVAGAGTAAR 424

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
             E L E ++ V  +  ++    R ++          V V    L  G  + E GL  + 
Sbjct: 425 AGERLAEADMGV-VVAEQLTEPPRSDV----------VTVTCGRLEHGFVLRESGLAVLT 473

Query: 658 DADKEG 663
           +AD  G
Sbjct: 474 EADLTG 479



 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 11/149 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL- 583
            + +SATP    LE     I E     T    PP E     T V    +++  AA +   
Sbjct: 783 MLTMSATPIPRTLEMSLAGIREMSTIAT----PPEERHPILTYVGAYDEKLVAAAIRREL 838

Query: 584 ----RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
               ++          E +   L E     R    H ++      +II      ++DVL+
Sbjct: 839 LREGQVFYVHNRVADIESVARRLREAVPEARIAVAHGQMNEDRLEKIIDGFWAREWDVLL 898

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLR 666
              ++  GLDI     + +  A+  G  +
Sbjct: 899 CTTIVETGLDISNANTLIVDHAEVLGLSQ 927


>gi|241765264|ref|ZP_04763245.1| transcription-repair coupling factor [Acidovorax delafieldii 2AN]
 gi|241365055|gb|EER59947.1| transcription-repair coupling factor [Acidovorax delafieldii 2AN]
          Length = 1172

 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 80/525 (15%), Positives = 169/525 (32%), Gaps = 93/525 (17%)

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
           +A  R   ++  +   A +L  E   F P      F  + +    + + P  D   E+ +
Sbjct: 45  KAAGRTTAIVTADATDAQRLIEEMAFFAPTLRCALFPDW-ETLPYDTFSPHQDLISERLA 103

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELL 309
           ++  +I +      +      D ++V + + +Y +      +      K+   +++ +  
Sbjct: 104 TL-WRISQ------KDKDTGADVVLVPATTALYRLAPPSFLAGYTFHFKVKQKLDEAKFK 156

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369
           + L    Y      +  G + V G  I++FP     V +RV +F ++I+ I  F P + +
Sbjct: 157 AQLTLAGYSHVSQVVSPGEYAVRGGLIDLFPM-GSLVPFRVDLFDDEIDSIRTFDPDSQR 215

Query: 370 KIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD 429
            +  V  +++     +                    R     +   +LE    + RI  D
Sbjct: 216 SLYPVPEVRLLPGREFPMDDD--------------ARAKFRSRWREMLEGDPTKSRIYKD 261

Query: 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG 489
              +    +   IE Y          +   T+F+Y+  ++ + +   H  +      +  
Sbjct: 262 ---MGAGVATAGIEYYLPLFF-----DETATVFDYLGGEATVVL---HGDLEPAFQRFWQ 310

Query: 490 DFHRKATLAEYGFRLPSC-MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           D   +  L +     P    +   L  +++         +S  PG  ++           
Sbjct: 311 DTKDRFRLVQGDPERPVLPPEALFLSADQFYTRAKEHAQLSIRPGVEDIAD--------- 361

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
                 +     +R A   +  ++  I        R+LL   +    E L ++L    + 
Sbjct: 362 NPHFQKLGDLSVVRGAEDPLARLHAHIRNT---QHRVLLLAESDGRRESLLDFLRASGVN 418

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
                S    L   +   D ++G     +    L  G    E G+               
Sbjct: 419 PPAFDS----LAEFQGADDEKVG-----IATAGLTVGFSWIEDGI--------------- 454

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
                                 D +T++   A   TTRRR+KQ +
Sbjct: 455 ----------------------DFVTETELFAAGPTTRRRKKQEQ 477



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 24/150 (16%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            QV  +++E+     +  +             L E L E  I V   H ++   E   ++
Sbjct: 831 GQVYFLHNEVETIENRRQK-------------LEEILPEARIAVA--HGQMPERELERVM 875

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RD    ++++L+   ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +  
Sbjct: 876 RDFVAQRYNILLCSTIIETGIDVPTANTIIMSRADKFGLAQ----LHQLRGRVGRSHHQ- 930

Query: 686 VILYADTITKSIQLAIDETTRRRE--KQLE 713
              YA  +   I+    +  +R E  +Q+E
Sbjct: 931 --AYAYLMVPDIEGLTKQAQQRLEAIQQME 958


>gi|159903468|ref|YP_001550812.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888644|gb|ABX08858.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9211]
          Length = 1169

 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 85/530 (16%), Positives = 175/530 (33%), Gaps = 66/530 (12%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           QL++ I    ++  L G + + KT     + +A + P IV+ P      + YS   NF  
Sbjct: 18  QLIERIQRNNRLI-LTGGSKTAKTIISTTISKAEKLPLIVIVPTLEETTRWYSILNNFSW 76

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
            +   Y  S    Y  E+  P T+    +   + E              + N+  +V++ 
Sbjct: 77  DSLYIYPTSENSPY--ESIPPTTEILWGQLQVLTELCS----------NDTNNIAIVTTE 124

Query: 279 SCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             +   +   +S+    + L   +  +  +L  +L    Y +       G +   GD ++
Sbjct: 125 RALQPHLPPKDSFLTSCLSLVKENIFDLDKLAINLTNLGYSKTTTTEEEGQWSRRGDILD 184

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           I+P + E    R+  +G++I++I EF P++ + +  +  + I   +  +     L++   
Sbjct: 185 IYPVNYES-PIRLEFYGDNIDKIKEFDPVSQRSLDEINQVIISPVNFDILIANKLSSFTP 243

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            I       L +      +              + L+       I  Y            
Sbjct: 244 EI-------LAKYFDADSI--------------DKLKNNIIPSGIRRYLGL-----AWTS 277

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
           P +L ++I   SL+  DE +      +            L      L    +N  L    
Sbjct: 278 PSSLIDFIDNSSLIITDEPNQCNSHSTAWTEHVSETYHQLETN---LELNDNNLALPPN- 333

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
            N     T       G + L+    I          +    +       Q   + + +  
Sbjct: 334 -NLHSTFTTNYDLLNGFYGLDTTDFIDQYNRENIFDISSKQILTYP--NQFGRLSEMLKK 390

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD------LRLG 631
                 +I +           +  L E +    ++ +   +L RI+ + D      LR  
Sbjct: 391 YQNDKFKIFIYSAQPSRT---SSLLNEHDCISVFVENSKDSL-RIKTLLDQNTPVALRS- 445

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEG-FLRSKTSLIQTIGRAAR 680
                   N   EG++     ++ + D +  G  L S +  ++   R+A 
Sbjct: 446 ------SSNFDLEGINFLPWKILLLTDKEFYGQQLVSHSGYVRRRKRSAS 489



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 72/197 (36%), Gaps = 9/197 (4%)

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVY 572
           R +++       + ++ATP    L      + E  +I     +   ++      + E + 
Sbjct: 760 RIKQFKKNID-VLTLTATPIPRTLYMSLSGVREMSLITTPPPLRRAIKTHLIPYEEEAIR 818

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRL 630
             I     +G +I   V       D+   L     ++R +  H ++   E    +     
Sbjct: 819 SAICQEIDRGGQIFYVVPRIEGITDIATKLSNMIPKIRILIAHGQMDEGELESSMIAFND 878

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-- 688
            + D+++   ++  GLDIP    + I DA + G L     L   +GR+    ++ ++   
Sbjct: 879 WEADLMLCTTIVESGLDIPRVNTILIEDAQQFG-LSQLYQLRGRVGRSGVQAHAWLLYPS 937

Query: 689 --YADTITKSIQLAIDE 703
               +   K    AI E
Sbjct: 938 NTTINDKAKQRLQAIQE 954


>gi|190573435|ref|YP_001971280.1| putative transcription-repair coupling factor [Stenotrophomonas
           maltophilia K279a]
 gi|190011357|emb|CAQ44972.1| putative transcription-repair coupling factor [Stenotrophomonas
           maltophilia K279a]
          Length = 1154

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 111/323 (34%), Gaps = 39/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            + +   + +A+   A   P +V+A +   A QL ++ +     +             P 
Sbjct: 25  ASSTALAWYLAQAERAHDAPLLVIARDNHGANQLEADLQTLLGGDPAL----------PV 74

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMI 294
              P  +T      S +  I   R SA   L      +V+  V   +  +          
Sbjct: 75  VAFPDWETLPYDRFSPHPDIISQRLSALHRLPTLKRGLVIVPVQTLLQQLAPRSYVIGGS 134

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             LK+G  ++ +     L    Y+     +  G F V G  +++FP   ++   RV +  
Sbjct: 135 FDLKVGQRLDLEAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPMGADE-PLRVELLD 193

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
            DI+ I  F P + + +  VE + +           ++   +      L+ R        
Sbjct: 194 EDIDSIRAFDPESQRSLDKVEAVHMLPGREVPMDEASIARVLAT----LRERFD------ 243

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV- 473
                  ++ R +   + L++  +   +E Y          E   TLF+Y+P+ SL  V 
Sbjct: 244 -------VDTRRSSLYQDLKSGLAPAGVEYYLPLFF-----ERTATLFDYLPDGSLPVVC 291

Query: 474 ----DESHVTIPQISGMYRGDFH 492
               + S     Q +  Y    H
Sbjct: 292 TGAYEASVAFWAQTADRYEQRRH 314



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 10/121 (8%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  +L+E + E  I +   H ++   E  +++ D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRELSELVPEARIGIA--HGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
            + I  AD+ G  +    L Q  GR  R+ +              + AI     +R + +
Sbjct: 890 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLITPD----RRAITPDAEKRLEAI 941

Query: 713 E 713
            
Sbjct: 942 A 942


>gi|307131510|ref|YP_003883526.1| transcription-repair coupling factor [Dickeya dadantii 3937]
 gi|306529039|gb|ADM98969.1| transcription-repair coupling factor [Dickeya dadantii 3937]
          Length = 1149

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 122/311 (39%), Gaps = 38/311 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           +  +   Q LLG +TG+      A+++E      +++ P+   A +L  E + F      
Sbjct: 9   LPGKAGEQRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQQF------ 62

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCI 281
                     QP   +P  +T      S +++I   R S    L       +++   + +
Sbjct: 63  --------TAQPVMTLPDWETLPYDSFSPHQEIISARLSTLYQLPSLTRGVLILPVNTLM 114

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   E      + LK G  + + +L + L +  Y+  D  +  G F   G  +++FP 
Sbjct: 115 QKVCPHEFLHGHALMLKKGQRLSRDKLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPM 174

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E+  +R+  F ++I+ +  F   T + +  VE I +     +    PT  TA++  + 
Sbjct: 175 GSEE-PFRIDFFDDEIDSLRLFDADTQRTLNEVEQIHLLPAREF----PTDKTAIELFRS 229

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + + +           E +R  + +    + +        IE +          +P P L
Sbjct: 230 QWREQ----------FEVRRDAEHV---YQQVSKGTLPAGIEYWQPLFFS----QPLPAL 272

Query: 462 FEYIPEDSLLF 472
           F Y+P D+LL 
Sbjct: 273 FSYLPTDTLLV 283



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     GI    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E   + L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKAAQRLNELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 922


>gi|197105082|ref|YP_002130459.1| transcription-repair coupling factor [Phenylobacterium zucineum
           HLK1]
 gi|196478502|gb|ACG78030.1| transcription-repair coupling factor [Phenylobacterium zucineum
           HLK1]
          Length = 1162

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 83/468 (17%), Positives = 162/468 (34%), Gaps = 54/468 (11%)

Query: 151 GDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLY 210
           G +P + AQL + +        L+G         MA V++A +  ++ +A +    +   
Sbjct: 5   GSRPVSAAQL-RRVADDPGRLDLVGAPEGFDALVMADVVKARKGLSVFVARDGARLSAFA 63

Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-- 268
             F+ F  +  V               +P  D         +  +   R +    L E  
Sbjct: 64  DAFRFFAQNVEVLT-------------LPAWDCLPYDRIGPSPGVAAQRMATLSRLAEGL 110

Query: 269 ---RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
              +   +V S  S +  +  V++  +     K+G+SVE  +L        Y R      
Sbjct: 111 DEKKPALLVTSVPSLLQRVPPVKAVKRASYSAKVGNSVEIADLERYFAVNGYARASTVSD 170

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           RG F + G  I++FP   E+   R+ +FG+ +E I  F P T +  + ++ + +   S  
Sbjct: 171 RGEFAIRGGVIDVFPPTAEE-PVRLDLFGDTLESIRAFDPETQRSTKQLKEVSLLPVSEA 229

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
           +     ++            R   LE  G   +              +   G    +E+Y
Sbjct: 230 LLDADAISRF----------RTGYLEAFGAPGD--------DPLYAAISEGGRRAGMEHY 271

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVD----ESHVTIPQISGMYRGDFHRKATLAEYG 501
                G        TLF+Y+P+D+L+ +D    ++     ++               +Y 
Sbjct: 272 LPLFYGEM-----ATLFDYLPKDALVGLDHLSRDARDERLEMIADAYESRAATERKVQY- 325

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
              P   +   L  +EW+      +   AT      ++ +G  V  +    G    P   
Sbjct: 326 --HPLEPERLYLDKDEWSER----LAKRATRRFSAFQEAEGEAVLDMGARQGRDFGPERK 379

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
             +    E   D     +  G R+L    ++  ++ L   L +  ++ 
Sbjct: 380 LDSVNLFEATADHAKKLSSDGKRVLFASWSEGSSDRLGHMLADHGLKT 427



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 104/289 (35%), Gaps = 49/289 (16%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + ++ATP    L+     I E  I  T  VD    +R+  T  + V   + +     +
Sbjct: 765  HLLTLTATPIPRTLQMSLSGIREMSIIATPPVDRLA-VRTYITPWDPVVIREALLREKYR 823

Query: 582  GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +            +L  +L E+   V+++  H ++   +  E++     G++DVL+  
Sbjct: 824  GGQAYFVAPRINDLPELERFLREQVPEVKFVVGHGQMAPTQLEEVMSAFYDGQYDVLLST 883

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + I  AD  G  +    L Q  GR  R+ +                
Sbjct: 884  TIVESGLDIPTANTLIIHRADMFGLAQ----LYQLRGRVGRSKSRAYAYLTTPA------ 933

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
                     EKQ+  + +  +       K+++ +D +       ++        +L  ++
Sbjct: 934  ---------EKQITLSAEKRL-------KVLQSLDNLGAGFQLASHDLDIRGGGNLLGEE 977

Query: 760  GKAHLK----SLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
               H++     L +QM                D +  LK     +G+ D
Sbjct: 978  QSGHIREIGVELYQQMLE--------------DAVNELKERAGAEGVPD 1012


>gi|291614691|ref|YP_003524848.1| transcription-repair coupling factor [Sideroxydans lithotrophicus
           ES-1]
 gi|291584803|gb|ADE12461.1| transcription-repair coupling factor [Sideroxydans lithotrophicus
           ES-1]
          Length = 1190

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 98/547 (17%), Positives = 182/547 (33%), Gaps = 86/547 (15%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +A+       P +++A N + A +L  E   F P   V     + +    +
Sbjct: 15  LQGSSDALALAQ-YAVQHSPLVIIAANALEAQRLVEEIPFFDPKLRVHLLPDW-ETLPYD 72

Query: 236 AYVPRTDTYIEKES------SINEQIDR---MRHSATRSLLERND--------CIVVSSV 278
            + P  D   E+ +      SI +Q  R       A+    ER +         IVV   
Sbjct: 73  HFSPHQDLISERLATLHHIRSIGQQTARPSPQSSPASGRGSERENQSSTSACDVIVVPIT 132

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           + +Y +  V   +     LK G+ ++       +    Y      +  G + V G  I++
Sbjct: 133 TALYPLPPVSYLAAYTFFLKKGERLDLDAFRQQMTLAGYNHVQQVLTPGEYCVRGGIIDL 192

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           F +    + +R+ +F ++IE I+ F   T + +  V  I++     +             
Sbjct: 193 F-AMGSVLPYRIDLFDDEIETIATFDVDTQRTLYPVPEIRLLPAREFPLDE--------- 242

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
                K +    +      E    + RI  D   +    +   IE Y          +  
Sbjct: 243 -----KGQATFRQNFRDRFEGDPSKSRIYKD---VSKGIAPAGIEYYLPLFF-----DQT 289

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC-MDNRPLRFEE 517
            TLF+Y+P+ + L +   H  + +    +  D   +  L     + P        L  E+
Sbjct: 290 ATLFDYLPKIATLCL---HHNVDEAITSFGKDAASRYNLLRGDPQHPLLETKELFLDGEQ 346

Query: 518 WNCLRPT-----TIVVSATPGSW-----------ELEQCQGIIVEQIIRPTGLVD----P 557
           +            I  SA P               L   +G+ V +  + T        P
Sbjct: 347 FFIRAKEFARIDVIAASA-PSPLAPLPEGEGNLSSLSPGEGVGVREDSKNTTRCSTAAIP 405

Query: 558 PVEI-RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           P+ + R A    +   D +   A    R+LL   +    E ++ YL E  +         
Sbjct: 406 PIAVDRRAEVPTQKFADFLRAYAG---RVLLLAESLGRREIMSGYLKEYGL--------- 453

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            T    E       G+   ++G+  ++ G  +P+  L  + + +                
Sbjct: 454 -TPAVCEDYASFLAGQDKFMLGVGPVQIGFSLPDEQLAIVTETELYAAQPRS-----RAN 507

Query: 677 RAARNVN 683
           RAAR  N
Sbjct: 508 RAARKSN 514



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 33/173 (19%)

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
            QG+I E ++R                QV  +++E++  A              M E L 
Sbjct: 842 SQGVIREAVLRELKR----------GGQVYFLHNEVDTIA-------------NMLEKLE 878

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
             L E  IRV   H ++   +   ++RD    +F+VL+   ++  G+D+P    + +  A
Sbjct: 879 TLLPEARIRVA--HGQMGERDLEAVMRDFHHQRFNVLLCSTIIETGIDVPTANTIIMNRA 936

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE-KQ 711
           D+ G  +    L Q  GR  R+ +     YA  +  S+     +  +R E  Q
Sbjct: 937 DRFGLAQ----LHQLRGRVGRSHHQ---AYAYLLVDSMDGLTAQAKKRLEAIQ 982


>gi|139438721|ref|ZP_01772205.1| Hypothetical protein COLAER_01207 [Collinsella aerofaciens ATCC
           25986]
 gi|133775801|gb|EBA39621.1| Hypothetical protein COLAER_01207 [Collinsella aerofaciens ATCC
           25986]
          Length = 1210

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 17/243 (6%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+  +  G+ + E   + L V+ SG+T   A       RP + +   +  A +      
Sbjct: 14  EALQAVEAGLDAGED--VTLAVSQSGRTLMAAAQFARRPRPTVYIVSGEDAADRAARSLA 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            +     V  F    D             Y  +E + ++ +   R  A   ++  ++CI+
Sbjct: 72  AYVGLAHVCRFPERKD-------------YPWREQAPDDAVVAQRCEALGRIVRGDNCIM 118

Query: 275 VSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S   +   +  VES         +G+ +   E+   LV   Y         G FRV G
Sbjct: 119 VASARALLRCVPPVESRYWESTTFAVGEEIPFDEVPQRLVGMGYTNAGAADAPGLFRVHG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D++E+FP+  E    R+  FG++I+ I      TGQ I N ++I+I+           ++
Sbjct: 179 DTVEVFPA-QEKAPVRIEFFGDEIDRIRRMVSSTGQTIGNEDSIEIFPCRELALTDEAVH 237

Query: 394 TAM 396
              
Sbjct: 238 NMH 240



 Score = 47.4 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 66/179 (36%), Gaps = 9/179 (5%)

Query: 516 EEWNCLRPT--TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVY 572
           E+   LR     + +SATP    ++     + +  +I        PV +       + V 
Sbjct: 795 EQLKNLREQIDVLTLSATPIPRTMQMATSGVRDMSLITTPPTGRRPVIVHVGEYDPDVVS 854

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRL 630
             I L   +G ++       +  +D    ++E     R    H ++   E  +++ +   
Sbjct: 855 AAIRLEVGRGGQVYYVSNRVKTIDDAVARVHEAAPEARVGVAHGKMSPREVEDVMIEFAT 914

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            K DVL+   ++  G+D      + I D+ + G  +    L Q  GR  R+       +
Sbjct: 915 KKIDVLIATTIVESGIDNATANTLIIEDSQRLGLAQ----LYQLKGRVGRSATQAYAYF 969



 Score = 37.8 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 5/109 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E            G ++++   T    ++  E   E      + V  +       ++
Sbjct: 688 GKTEVALRAAFKCVDSGRQVMVLCPTTILAQQHYETFFERFAPFGLEVEVLSRFRTPAQQ 747

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKT 669
              ++    G  DVL+G + LL   ++    G+V I +  + G    + 
Sbjct: 748 KRALKAFAEGTIDVLIGTHRLLSADVNPKNLGMVIIDEEQRFGVQHKEQ 796


>gi|227111702|ref|ZP_03825358.1| transcription-repair coupling factor [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 1149

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 62/311 (19%), Positives = 122/311 (39%), Gaps = 38/311 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           +  +   Q LLG +TG+      A++IE      +++AP+   A +L  E + F      
Sbjct: 9   LPPKAGEQRLLGQLTGAACAVECAEIIERHTGLVVLVAPDMQNALRLRDEIQQFTD---- 64

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                     Q    +P  +T      S +++I   R S    L      +++  V+ + 
Sbjct: 65  ----------QHVTTLPDWETLPYDSFSPHQEIISTRLSTLYQLPNMTRGVLILPVNTLM 114

Query: 283 GIGSVESYSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                 S+     + LK G  + + +L S L +  Y+  D  +  G +   G  +++FP 
Sbjct: 115 QRVCPHSFLHGHALVLKKGQRLSRDKLRSQLEQAGYRSVDQVMEHGEYATRGALLDLFPM 174

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E+  +R+  F ++I+ +  F   T + +  V  I +     +    PT  TA++  + 
Sbjct: 175 GSEE-PYRIDFFDDEIDSLRLFDVDTQRTLNEVPHINLLPAHEF----PTDKTAIELFRS 229

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + + +           E +R  + I    + +        IE +          EP P+L
Sbjct: 230 QWREQ----------FEVRRDAEHI---YQQVSKGVWPAGIEYWQPLFFS----EPLPSL 272

Query: 462 FEYIPEDSLLF 472
           F Y P ++L+ 
Sbjct: 273 FSYFPNNTLIV 283



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDNLV--VREAILRETLR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E  T+ L E     R    H +++  E   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKATQRLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 922


>gi|329113371|ref|ZP_08242152.1| Transcription-repair-coupling factor [Acetobacter pomorum DM001]
 gi|326697196|gb|EGE48856.1| Transcription-repair-coupling factor [Acetobacter pomorum DM001]
          Length = 1142

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 84/482 (17%), Positives = 165/482 (34%), Gaps = 60/482 (12%)

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
              + +     + P + +A N    A+L        P   V  F             P  
Sbjct: 7   ALLLGRRARDHKGPVLHIARNDAAMARLNDMLAFVAPDVEVLRF-------------PAW 53

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLE----RNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
           D       S N  I   R S    LLE    R   ++ +  + +  +   +++    + +
Sbjct: 54  DCLPYDRVSPNPSIVAERVSTLTRLLEPAKGRPRLVLATVNAVVQRVAPRKTFEGQSLSI 113

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           + G+S++Q  L+  L+   Y R D  +  G F   G   +++P+   +   R+ +FG+++
Sbjct: 114 RTGESLDQGFLIELLIANGYTRTDTVMEAGEFATRGGIFDLYPAGAGE-PLRLDLFGDEV 172

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           E I  F P + +     + + +   S +   + +++            R    +  G   
Sbjct: 173 ENIRAFDPGSQRSTAKRDGLTLCPVSEFSLDKESISRF----------RTGWRDAFGPAA 222

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESH 477
            +  L        E +        IE++              TLF+Y+P+ ++    ++ 
Sbjct: 223 TSDPL-------YEHISDGRRHPGIEHWLPLFHDHLE-----TLFDYLPDVAVSLEHQAE 270

Query: 478 -VTIPQISGMYRGDFHRKATLAEYG--FR-LPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
            V   ++  +      R+  + E    +R LP       L  + W+       VV+ +P 
Sbjct: 271 DVLKARLEMIEDHYQARRQPVREGEIPYRPLPP--HLLYLDEKGWDASLARVPVVAFSP- 327

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGLRILLTVLTK 592
                Q +G     +    G +   +   + R QV  +  D++   AQ   R  +   TK
Sbjct: 328 ---YAQPEGAGGVDVGGRPGKMFSKIVPGAQREQVFTLLGDQVKEWAQVKRRAFVAAWTK 384

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
              E +   L E  +         +T E  E     + G   +L     L  G    +  
Sbjct: 385 GSRERIATLLREHGVP-------TQTYETWEQAHKAKPGPVGLL--TLGLERGFVADDLA 435

Query: 653 LV 654
            V
Sbjct: 436 FV 437



 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 11/170 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             + +SATP    L+     + E  +    PT  +     I    + V  + + I     
Sbjct: 739 HVLTLSATPLPRTLQLSLSGVREMSLIATPPTDRLAVRTFIMPFDSVV--IREAIQRERF 796

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G +I          + L E L       R +  H  +   E   ++ +   GK+D+L+ 
Sbjct: 797 RGGQIFCVAPRIEDLDRLAERLTAIVPDARLIQAHGRLSATELERVMTEFSDGKYDILLS 856

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            N++  GLD+P    + I  AD  G  +    L Q  GR  R        
Sbjct: 857 TNIVESGLDMPAVNTLIIHRADMFGLGQ----LYQLRGRVGRGKQRGYAY 902


>gi|291303253|ref|YP_003514531.1| transcription-repair coupling factor [Stackebrandtia nassauensis
           DSM 44728]
 gi|290572473|gb|ADD45438.1| transcription-repair coupling factor [Stackebrandtia nassauensis
           DSM 44728]
          Length = 1351

 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 105/267 (39%), Gaps = 20/267 (7%)

Query: 150 SGDQP--AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAA 207
           + D+P  A + +L          Q+ +    + + FT+A +    +R  + +        
Sbjct: 13  ALDEPGLARVRELAAE-GGPTAEQVHVTAPAAARPFTVAAL-AQAERTVLAVTATSREGE 70

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           +L        P  +V ++ ++ +    E   PR+DT  ++ + ++    R+ H     L 
Sbjct: 71  ELTQSLAGLLPDGSVAFYPAW-ETLPHERLSPRSDTVGKRLALLH----RLAHPQGAPLR 125

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
                +       + G+G ++        L +G+S +  +L + L    Y R D+   RG
Sbjct: 126 VVVAPVRSLLQPQLKGLGDLKPVR-----LAVGESTDLSDLAAELSDLAYARVDLVEKRG 180

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            F V G  ++IFP   ++   RV  FG++IE I  F     + +   +T+        + 
Sbjct: 181 EFAVRGGILDIFPP-TDEHPSRVEFFGDEIESIRSFAVADQRSLDKADTLFAPPCRELLL 239

Query: 388 PRPTLNTAMKYIKE-----ELKMRLIE 409
                  A +  ++     EL  +L +
Sbjct: 240 SPRVRERAAELGQQHPGLAELCEQLAQ 266



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 11/149 (7%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
             + +SATP    LE     I E     + +  PP E     T V   ED      +  + 
Sbjct: 949  VLAMSATPIPRTLEMAITGIREM----STITTPPEERHPVLTFVGGYEDKQVGAAIRREL 1004

Query: 581  -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
             +  ++          E     L E     R +  H ++      +I++D   G+FDVLV
Sbjct: 1005 LRDGQVFYLHNRVESIEKAATRLREIVPEARVVVAHGKMGENRLEQIMQDFWNGEFDVLV 1064

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLR 666
               ++  G+DIP    + +  AD  G  +
Sbjct: 1065 STTIIESGIDIPNANTLIVERADLLGLSQ 1093



 Score = 37.8 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 78/255 (30%), Gaps = 19/255 (7%)

Query: 50  RSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSSISMSE-KQTREISEQTMTPSVQALAR 108
            S+ G+             +      GE  S   +  S+ ++ +  +++ +      L +
Sbjct: 709 ASKRGQPADRLFVPTDALDQLTRYVGGEMPSVHKLGGSDWQKAKSRAKKAVREIAAELIK 768

Query: 109 LIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE 168
           L  +       G  + P   W                 Y  + DQ  AI ++   +  R 
Sbjct: 769 LYAARQ--ATEGHAFGPDTPWQRELEDAF--------PYQETPDQAGAIDEVKSDMMGRT 818

Query: 169 K-VQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
              +L+ G  G GKT    +         +   V+ P  +LA+Q  + F        V  
Sbjct: 819 PMDRLICGDVGYGKTEIAVRAAFKAVTDGKQVAVLVPTTLLASQHLNTFTERMSQFPVTI 878

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
                     EA   R      +   +   +   R   T +   ++  +V+      +G+
Sbjct: 879 KQLSRFQTDAEAEQIRKGLIAGEVDIV---VGTHRLLQTET-RFKDLGLVIVDEEQRFGV 934

Query: 285 GSVESYSQMIVQLKI 299
              E    +   + +
Sbjct: 935 EHKEKLKALRAHVDV 949


>gi|239815560|ref|YP_002944470.1| transcription-repair coupling factor [Variovorax paradoxus S110]
 gi|239802137|gb|ACS19204.1| transcription-repair coupling factor [Variovorax paradoxus S110]
          Length = 1165

 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 81/498 (16%), Positives = 156/498 (31%), Gaps = 60/498 (12%)

Query: 179 SGKTFTMAKV---IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           S     +A++    +A  R   +   +   A +L  E   F P      F          
Sbjct: 20  SADALLLAQLGMREKAAGRATAMFTADANDAQRLIDEIAFFAPELRCALF---------- 69

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV-VSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ +   R +    + ++   +V V + + +Y +      +   
Sbjct: 70  ---PDWETLPYDSFSPHQDLISERLATLWRISQKEADVVLVPATTALYRLAPPAFLAGYT 126

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
              K    +E+ +L + L    Y      +  G + V G  I++FP     V +RV +F 
Sbjct: 127 FHFKAKQKLEESKLKAQLTLAGYSHVTQVVSPGEYAVRGGLIDLFPM-GSLVPFRVDLFD 185

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P T + +  V  +++     +                  + R  EL    
Sbjct: 186 DEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDDDARAR--------FRSRWREL---- 233

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
             LE    + RI  D   +    +   IE Y          +   T+F+Y+  D+ + + 
Sbjct: 234 --LEGDPTKSRIYKD---MGNGVATAGIEYYLPLFF-----DETATVFDYLGADATVVLH 283

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC-MDNRPLRFEEWNCLRPTTIVVSATPG 533
                  Q       + +R   L       P+   +   L  E++           A   
Sbjct: 284 GDLEPAFQHFWQDTSERYR---LVRGDPERPALPPEALFLSAEQFYQRAK----PHAQLA 336

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
                    I  E        + P   +R A   +  +   I        R+LL   ++ 
Sbjct: 337 IRGNAGGGDIAAETPYAEFDRLPPFAVVRGAEDPLVGLKAHIKATP---HRVLLIAESEG 393

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L ++L    +      S    L   E   D ++G     +    L  G    E G+
Sbjct: 394 RRESLLDFLRASGVSPPAFDS----LAEFEASADEKIG-----IATAALASGFAWREQGI 444

Query: 654 VAILDADKEGFLRSKTSL 671
             + + +      +    
Sbjct: 445 DFVTETELFATAPTTRRR 462



 Score = 50.9 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 19/134 (14%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            QV  +++E+     +  +             L E L E  I V   H ++   E   ++
Sbjct: 823 GQVYFLHNEVETIENRRQK-------------LEEILPEARIAVA--HGQMPERELERVM 867

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RD    ++++L+   ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +  
Sbjct: 868 RDFVAQRYNLLLCSTIIETGIDVPTANTIVMSRADKFGLAQ----LHQLRGRVGRSHHQA 923

Query: 686 VILYADTITKSIQL 699
                   T+ +  
Sbjct: 924 YAYLMVPDTEGLTK 937


>gi|85708435|ref|ZP_01039501.1| transcription-repair coupling factor [Erythrobacter sp. NAP1]
 gi|85689969|gb|EAQ29972.1| transcription-repair coupling factor [Erythrobacter sp. NAP1]
          Length = 1163

 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 130/366 (35%), Gaps = 42/366 (11%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           L  I + +    L  +    +   M+ +  A ++ A+ +AP+      +    + F P  
Sbjct: 4   LNRILAAQAPLTLSSLPRGAQPLVMSDLARAAKKRAVFIAPDDAAMRSVAEAARFFAPEV 63

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL---LERNDCIVVSS 277
            V  F             P  D      +S    +   R SA   L      +  +V + 
Sbjct: 64  EVLEF-------------PAWDCLPYDRASPALSVSAARLSALFRLQHPSTGSQLLVTTI 110

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            + +  + +     + +   K G ++  + L + L +Q Y R D  +  G F V G  ++
Sbjct: 111 NAVLQRVLTPFRIRESVRGFKPGTTIGHESLAALLTRQGYTRTDTVVDHGEFAVRGSIVD 170

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFPS L++   R+  FG+++E +  F P T +    ++   +   S  +    ++     
Sbjct: 171 IFPSSLDE-GLRLDFFGDELESLRLFDPSTQRSTGRLKDHLLLPASEALIDEDSIRRF-- 227

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
                   R    EK G       L        E +        +E++          E 
Sbjct: 228 --------RSRYREKFGAAATQDPL-------YEAVSDGRRLAGMEHWLPLFE-----ER 267

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY---GFRLPSCMDNRPLR 514
             TLF+++ +D ++ +D++ +   +       D+H +         G   P   D   L 
Sbjct: 268 LATLFDHLADDDVVVIDQAALGAAEERLSDIQDYHDQRGRVASDKTGSYRPLETDALYLA 327

Query: 515 FEEWNC 520
            +E+  
Sbjct: 328 SDEFQS 333



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 9/162 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + ++ATP    L+     + E     T  VD    +R+   + +D+   + +     +
Sbjct: 756 HMLTLTATPIPRTLQMAMTGLRELSTIQTPPVDRLA-VRTYVMEWDDMVMREALLREHHR 814

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +  + V       D+ E+L+E    V+ +  H ++   E  + +      K++VL+  
Sbjct: 815 GGQSFIVVPRISDMADVEEWLHENVPEVKAISAHGQMGAAEIEQRMSAFYDRKYEVLLST 874

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            ++  GLD+P    + I  AD+ G  +    L Q  GR  R+
Sbjct: 875 TIVESGLDLPSANTIIIHRADRFGLAQ----LYQLRGRVGRS 912



 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 4/109 (3%)

Query: 115 PLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLL 173
            L+K        ++            F  +  +  + DQ AAIA +L+ + S +   +L+
Sbjct: 573 ELMKVAAERALKKAPRFEAEDASFNQFVDRFPWEETDDQDAAIADVLRDLESGKPMDRLV 632

Query: 174 LGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
            G  G GKT      A V     +   V+AP  +LA Q Y  FK  F  
Sbjct: 633 CGDVGFGKTEVALRAAFVAAMSGKQVAVVAPTTLLARQHYENFKQRFEG 681


>gi|318060504|ref|ZP_07979227.1| transcription-repair coupling factor [Streptomyces sp. SA3_actG]
 gi|318077247|ref|ZP_07984579.1| transcription-repair coupling factor [Streptomyces sp. SA3_actF]
          Length = 1178

 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 115/287 (40%), Gaps = 19/287 (6%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+A+ +K      + Q  +    + + F +A +    +R  + +      A  L +  +
Sbjct: 14  PALAEAVKAAGDGHRTQADVVGPPAARPFVVAALAREARRTVLAVTATGREAEDLAAALR 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
              P   V  F S+ +    E   PR+DT   + +     + R+ H            +V
Sbjct: 74  TLIPAEGVVEFPSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPEADDPEAGPVSVV 128

Query: 275 VSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           V+ +  +      G+G +E  +     L+ G SV+ +E++ +L    Y R ++   RG F
Sbjct: 129 VAPIRSVLQPQVKGLGDLEPVA-----LRQGQSVDLQEIVEALAAAAYARVELVEKRGEF 183

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTP 388
            V G  +++FP   E+   RV  +G+++EE+  F     + +   E  +        +  
Sbjct: 184 AVRGGILDVFPP-TEEHPLRVEFWGDEVEEVRYFKVADQRSLEIAEHGLWAPPCRELLLT 242

Query: 389 RPTLNTAMKYIKE--ELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
                 A    +E  EL   L ++ +   +   + L   +  D+E+L
Sbjct: 243 DEVRRRAAVLAEEHPELHELLGKIAEGIAVEGMESLAPVLVDDMELL 289


>gi|220919566|ref|YP_002494870.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219957420|gb|ACL67804.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 1233

 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 93/527 (17%), Positives = 179/527 (33%), Gaps = 60/527 (11%)

Query: 150 SGDQPAAIAQ--LLKGIHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKI 204
           SG+ P A A+  + + +  + +   + G+ G+ +   +  ++       R  + +A ++ 
Sbjct: 5   SGETPGASARDRVRRALEEKRRAD-VTGLVGAARGLLIRDLLAPGPGRARSVLAVAADEE 63

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
            A  L  +   F    AV    +       +A +P  D   ++      +++R+   A  
Sbjct: 64  EADALARDLAFFLGEGAVLRVPA-------DAVLPYDDLSPDR----GVEMERLAALARL 112

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL-KIGDSVEQKELLSSLVKQQYKRQDIG 323
            L       VV S   +          +    L   G  V+++ L + LV   + R  + 
Sbjct: 113 HLAPEQAKAVVVSARALARRTVPRRVFEAGSDLLGKGVEVDREALAAKLVLLGFARTPLV 172

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              GTF V G  ++++ S  +    R+  FG++IE    F P T +   +VE + +  + 
Sbjct: 173 EDPGTFAVRGGIVDLW-SPADPKPVRLEFFGDEIESCRAFDPSTQRSEGDVEEVLLCPSR 231

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
             +        A   ++ E   R+             R   R+   L+ ++       +E
Sbjct: 232 EALFTEEGKEAAKTAVR-EAAERV------------NRPTSRVREVLDAIDAGTPFFGLE 278

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG-DFHRKATLAEYGF 502
                      G    TLF+Y+P  + ++VD        ++ +         A L     
Sbjct: 279 ALLPGFHPGGLG----TLFDYLPAGAAVYVDGVAAVEDALAELDEALAREHAAALKREEL 334

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVV------SATPGSWELEQCQGIIVEQIIRPTGLVD 556
            LP      P        L   T+V       +  P  + LE+  GI  E I    G   
Sbjct: 335 VLPPAAHFLPGAEARARALALPTVVRHRVWLGTEEPIRYALEETAGIRGE-IEGAHGE-- 391

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
                      +  +   +    ++G+  ++   T   +E L   L +R  + R +H+  
Sbjct: 392 --------EGALAPLTRRLEDWRKRGIAAVVAAGTASASERLRRLLEDRRQQSR-VHTGP 442

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
               R             V V    +  G      GL  + D +  G
Sbjct: 443 PGAPREIYDPA-----VHVHVFAGEISAGFVDAGAGLAVVSDEEIFG 484



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 71/193 (36%), Gaps = 13/193 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T   D    IR+   + +   V + I    ++G
Sbjct: 788 VLTLTATPIPRTLHMSLAGVRDLSIIATPPEDRRA-IRTFVMKFDPAAVKEAIETELKRG 846

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       R    +  +L E   + R    H ++   +   ++      + DVL+  +
Sbjct: 847 GQVFFVHNRVRSIHAMQRFLNELVPKARVGVAHGQMGEGKLEHVMTQFVDKELDVLLATS 906

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD----TITKS 696
           ++  GLDIP    + +  AD  G  +    L Q  GR  R+               +TK 
Sbjct: 907 IIESGLDIPSANTIIVNRADHFGLAQ----LYQIRGRVGRSRERAYAYLLVPARRPVTKD 962

Query: 697 IQLAIDETTRRRE 709
            Q  ++   R  E
Sbjct: 963 AQKRLEVLQRFSE 975



 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 11/127 (8%)

Query: 107 ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS 166
            +L++    LL        H  ++     +    F+ +  +  + DQ  AI  +++ +  
Sbjct: 589 EQLLKMAAELLDIYAARAAHPGFAYPEPDQLFREFEAEFPWEETPDQAKAIEDVVRDMRK 648

Query: 167 REK--------VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
             +         +L+ G  G GKT      A +    ++   V+ P  +LAAQ    F+ 
Sbjct: 649 GRQGPAAAAPMDRLVCGDVGYGKTEVAMRAAMLAVLAKKQVAVLVPTTVLAAQHERTFRE 708

Query: 216 FFPHNAV 222
            F    V
Sbjct: 709 RFKGYPV 715


>gi|325286644|ref|YP_004262434.1| transcription-repair coupling factor [Cellulophaga lytica DSM 7489]
 gi|324322098|gb|ADY29563.1| transcription-repair coupling factor [Cellulophaga lytica DSM 7489]
          Length = 1113

 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 97/249 (38%), Gaps = 16/249 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   + +L   I   EK   L G+TGS  +F +++  +    P +V+  +K  AA   ++
Sbjct: 12  QLPQMQKLQTTIAKNEKNTTLTGLTGSALSFVISETFKEADTPFLVVFSDKEEAAYHLND 71

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            +       V ++   Y                 +   ++     +R      +  R   
Sbjct: 72  LEQLVGEKDVLFYPGSYRR-------------PYQIDEVDNANVLLRAEVLNRINSRKKP 118

Query: 273 --IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             +V    +    + + +   +  +++K+ D++    L   L + ++KR D     G F 
Sbjct: 119 ALLVTYPDALFEKVVTRKELDKNTLKIKVDDTITLDFLNEVLFEYKFKRVDFVTEPGEFS 178

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V G  +++F S   DV +R+  FG++++ I  F   T      V  I I  N        
Sbjct: 179 VRGGIVDVF-SFSNDVPYRIEFFGDEVDSIRTFDVETQLSTDKVTKITIVPNVENKFLDE 237

Query: 391 TLNTAMKYI 399
           T  + +KYI
Sbjct: 238 TRESFLKYI 246



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 69/190 (36%), Gaps = 12/190 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+       +     T   +  P++    R   + + D ++   Q+G 
Sbjct: 704 VLTLTATPIPRTLQFSLMAARDLSTINTAPPNRYPIDSHVVRFTEDTIRDAVSYEIQRGG 763

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   L       +    H ++   +   ++     G+FDVLV   +
Sbjct: 764 QVFFIHNRIENIKEVAGMLQRLVPDAKIGIGHGQMDGKKLETLMLAFMNGEFDVLVSTTI 823

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+P    + I +A+  G     + L Q  GR  R+       +      S+    
Sbjct: 824 IESGLDVPNANTIFINNANNFGL----SDLHQMRGRVGRSNKKAFCYFITPPYDSMS--- 876

Query: 702 DETTRRREKQ 711
                R+  Q
Sbjct: 877 --NDARKRIQ 884


>gi|262201520|ref|YP_003272728.1| transcription-repair coupling factor [Gordonia bronchialis DSM
           43247]
 gi|262084867|gb|ACY20835.1| transcription-repair coupling factor [Gordonia bronchialis DSM
           43247]
          Length = 1195

 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 97/523 (18%), Positives = 177/523 (33%), Gaps = 75/523 (14%)

Query: 161 LKGIHSREKV-QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           + GI +R     + L    + + F +A + +    P +V++ N   A  L +E       
Sbjct: 20  ISGIRARRDEVHVDLTAPDAARPFVVACLAKDADAPLLVVSANGREADDLTAELAELLDE 79

Query: 220 -NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
            +AV  F S+ +    E   P  DT   + + ++    R+ +     L      +VV++V
Sbjct: 80  PDAVAQFPSW-ETLPHERLSPSADTVGARLAVLH----RLANPGDSPLR-----VVVTTV 129

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
             +    +        + L  G  ++   LL+ LV+  Y+R D+   RG F V G  +++
Sbjct: 130 RSLVQPMAPGLGDVATISLAEGFEIDFDGLLTDLVEMAYERVDMVGRRGEFAVRGGILDV 189

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE--TIKIYANSHYVTPRPTLNTAM 396
           FP    D   RV  +G++I E+  F     +    VE   + I+     +        A 
Sbjct: 190 FP-TTADYPVRVEFWGDEITEMRAFSVADQRSQPEVEATRVDIHPCRELLLTDEIRTRA- 247

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR-YLTGRNPG 455
                EL  +    E +  L E           L  L        +E      + GR   
Sbjct: 248 ----AELASQ---FEGDPTLAEM----------LTKLAEGIPVNGMEALIPALVDGRMQL 290

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
                L E +P  + + + +      ++           A   E  +   +     PL  
Sbjct: 291 -----LTEVVPAGTRVLILDP----EKVRTRAADLSKTGAEFLEASWTAAAMGAQGPL-- 339

Query: 516 EEWNCLRPTTIVVSATPGSW----ELEQCQGIIVEQ--IIRPTGLVDPPVEI-------- 561
              +      + V     ++    E+ +           I P    D    +        
Sbjct: 340 ---DGRSSQALGVDLQASAYRPLDEVRETTLAAGRSWWTISPLATGDDHEVVLDLAPGPA 396

Query: 562 -RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
            R    ++  V+ ++    + G    + V  K  A+ + E L +  +     H   +   
Sbjct: 397 PRGDDNEIVAVFAQLRAHVRAGQTAAIVVAGKGTAQRVGERLADAEVP----HVIAEPGH 452

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           R            +V V    LR GL  P+ GLV + +AD  G
Sbjct: 453 RPAP--------GEVSVFGGTLRHGLVCPDAGLVIVTEADLTG 487



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 23/204 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + ++ PP E     T V     + V   I    
Sbjct: 790 VLTMSATPIPRTLEMSMAGIREM----STILTPPEERHPVLTYVGAYAPKQVAAAIRREL 845

Query: 580 QQGLRILLT---VLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +  ++      V T      D+   + E  + V   H ++   +  + +      +FDV
Sbjct: 846 LRDGQVFYVHNRVSTIDKTARDIAAMVPEARVVVA--HGQMNEDQLEKTVSGFWNREFDV 903

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  GLDI     + +  A+  G  +    L Q  GR  R+          +  +
Sbjct: 904 LVCTTIIETGLDISNANTLIVDRAENLGLSQ----LHQLRGRVGRSRERGYAYLLYSPER 959

Query: 696 SIQLAIDETTRRREKQLEHNKKHN 719
                + ET   R   +  N +  
Sbjct: 960 P----LTETAYDRLATIAQNNELG 979



 Score = 40.8 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 18/156 (11%)

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSAR-----------TQVEDVYDEINLA 578
           TP   E+E       E + + T + +   ++ R               + E        A
Sbjct: 626 TPWQQEMEDA-FDFTETVDQMTVIGEVKADMERPVPMDRVIVGDVGYGKTEIAVRAAFKA 684

Query: 579 AQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            Q G ++ + V T    ++  +  +E +    +RVR +       E  EII  +  G+ D
Sbjct: 685 VQDGKQVAVLVPTTILAQQHLQTFSERMSGFPVRVRGLSRFTDARESREIIDAMATGEVD 744

Query: 635 VLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKT 669
           +++G + LL+ G+   + GLV + +  + G    + 
Sbjct: 745 IVIGTHRLLQTGVTWKDLGLVIVDEEQRFGVEHKEH 780


>gi|197124848|ref|YP_002136799.1| transcription-repair coupling factor [Anaeromyxobacter sp. K]
 gi|196174697|gb|ACG75670.1| transcription-repair coupling factor [Anaeromyxobacter sp. K]
          Length = 1241

 Score =  144 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 88/514 (17%), Positives = 171/514 (33%), Gaps = 57/514 (11%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFKNFF 217
           ++     ++   + G+ G+ +   +  ++       R  + +A ++  A  L  +   F 
Sbjct: 25  VRRALEEKRRADVTGLVGAARGLLIRDLLAPGPGRARSVLAVAADEEEADALARDLAFFL 84

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
              AV    +       +A +P  D   ++      +++R+   A   L       VV S
Sbjct: 85  GEGAVLRVPA-------DAVLPYDDLSPDR----GVEMERLAALARLHLAPEQAKAVVVS 133

Query: 278 VSCIYGIGSVESYSQMIVQL-KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
              +          +    L   G  V+++ L + LV   + R  +    GTF V G  +
Sbjct: 134 ARALARRTVPRRVFEAGSDLLGKGVEVDREALAAKLVLLGFARTPLVEDPGTFAVRGGIV 193

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +++ S  +    R+  FG++IE    F P T +   +VE + +  +   +        A 
Sbjct: 194 DLW-SPADPKPVRLEFFGDEIESCRAFDPSTQRSEGDVEEVLLCPSREALFTEEGKEAAK 252

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
             ++ E   R+             R   R+   L+ ++       +E           G 
Sbjct: 253 TAVR-EAAERV------------NRPTSRVREVLDAIDAGTPFFGLEALLPGFHPGGLG- 298

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG-DFHRKATLAEYGFRLPSCMDNRPLRF 515
              TLF+Y+P  + ++VD        ++ +         A L      LP      P   
Sbjct: 299 ---TLFDYLPAGAAVYVDGVAAVEDALAELDEALAREHAAALRREELVLPPAAHFLPGAE 355

Query: 516 EEWNCLRPTTIVV------SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
                L   T+V       +  P  + LE+  GI  E I    G              + 
Sbjct: 356 ARARALALPTVVRHRVWLGTDEPIRYALEETAGIRGE-IEGAHGE----------EGALA 404

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   +    ++G+  ++   T   +E L   L +R  + R +H+      R        
Sbjct: 405 PLTRRLEDWRKRGIAAVVAAGTASASERLRRLLEDRRQQSR-VHTGPPGAPREIYDPA-- 461

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                V V    +  G      GL  + D +  G
Sbjct: 462 ---VHVHVFAGEISAGFVDAGAGLAVVSDEEIFG 492



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 71/193 (36%), Gaps = 13/193 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T   D    IR+   + +   V + I    ++G
Sbjct: 796 VLTLTATPIPRTLHMSLAGVRDLSIIATPPEDRRA-IRTFVMKFDPAAVKEAIETELKRG 854

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       R    +  +L E   + R    H ++   +   ++      + DVL+  +
Sbjct: 855 GQVFFVHNRVRSIHAMQRFLNELVPKARVGVAHGQMGEGKLEHVMTQFVDKELDVLLATS 914

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD----TITKS 696
           ++  GLDIP    + +  AD  G  +    L Q  GR  R+               +TK 
Sbjct: 915 IIESGLDIPSANTIIVNRADHFGLAQ----LYQIRGRVGRSRERAYAYLLVPARRPVTKD 970

Query: 697 IQLAIDETTRRRE 709
            Q  ++   R  E
Sbjct: 971 AQKRLEVLQRFSE 983



 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 11/127 (8%)

Query: 107 ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS 166
            +L++    LL        H  ++     +    F+ +  +  + DQ  AI  +++ +  
Sbjct: 597 EQLLKMAAELLDIYAARAAHPGFAYPEPDQLFREFEAEFPWEETPDQAKAIEDVVRDMRK 656

Query: 167 REK--------VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
             +         +L+ G  G GKT      A +    ++   V+ P  +LAAQ    F+ 
Sbjct: 657 GRQGPAAAAPMDRLVCGDVGYGKTEVAMRAAMLAVLAKKQVAVLVPTTVLAAQHERTFRE 716

Query: 216 FFPHNAV 222
            F    V
Sbjct: 717 RFKGYPV 723


>gi|256824567|ref|YP_003148527.1| transcription-repair coupling factor Mfd [Kytococcus sedentarius
           DSM 20547]
 gi|256687960|gb|ACV05762.1| transcription-repair coupling factor Mfd [Kytococcus sedentarius
           DSM 20547]
          Length = 1244

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 152/441 (34%), Gaps = 49/441 (11%)

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
              +A+ +E      ++       A  L +  ++  P  +V  F S+ +    E   PR+
Sbjct: 88  AAVLARELEPAGGVVLLATATGREAEDLAASLRSLLPPQSVAVFPSW-ETLPHERLSPRS 146

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           DT  ++ +     + R+ H       +    +VVS+V  +           + V ++ G+
Sbjct: 147 DTVGQRLAV----LRRLAHPGQAD-HDGPLRVVVSAVRSLLQPLPAGLGDLVPVSVQAGE 201

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
           + + +E + +LV   Y R D+   RG F V G  +++FP   ED   RV  +G+++EE+ 
Sbjct: 202 TRDPEEFIEALVAAAYARTDLVEKRGEFAVRGGIVDVFPP-TEDHPLRVEFWGDEVEEVR 260

Query: 362 EFYPLTGQKIRNVETI-KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
            F     + +               +        A   + +EL      L          
Sbjct: 261 WFRVADQRSLEIAPGGLWAPPCRELLLTEEVQQRA-AGLADELPGVADMLAS-------- 311

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
                       +    + + +E+ +  L          TL + +P+ S L V +     
Sbjct: 312 ------------IAAGVAVEGMESLTPVLVDGME-----TLLDVLPDGSRLLVSDP---- 350

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL---------RFEEWNCLRPTTIVVSAT 531
            ++                 G+   +     P+          + E + +R   +     
Sbjct: 351 ERLRRRAADLVSTSQEFLTAGWSSAAAGGQVPVDLVSALGEGAYRELSEVRSHALETGI- 409

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
            G W L      +       T L    VE+   R + E   D++  A   G R++L    
Sbjct: 410 -GWWALSPFAPDLDTLDDDATHLRLDAVEMPQYRGEPEKAIDDVRAALAAGRRVVLLTDG 468

Query: 592 KRMAEDLTEYLYERNIRVRYM 612
             +A+ L E L E  +  R +
Sbjct: 469 PGLAKRLVEVLGEHEVGARVV 489



 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
             + +SATP    LE     I E     T    PP E     T V     + +   I+   
Sbjct: 835  VLAMSATPIPRTLEMAVTGIREMSTLAT----PPEERHPVLTYVGAYEEKQIAAAIHREL 890

Query: 580  QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +  ++          + +   L E     R    H ++      +++ D    KFDVLV
Sbjct: 891  LREGQVFYVHNKVATIDKVASRLRELVPEARIEVAHGQMGEHRLEQVVTDFWERKFDVLV 950

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  GLDI     + +  AD  G  +    L Q  GR  R        +     K  
Sbjct: 951  STTIVETGLDIANANTLILDRADTFGLSQ----LHQLRGRVGRGRERAYAYFLYPPEKP- 1005

Query: 698  QLAIDETTRRREKQLEHNKKHN 719
               + ET   R + +  +    
Sbjct: 1006 ---LTETAHDRLRTIASHTDLG 1024


>gi|322833632|ref|YP_004213659.1| transcription-repair coupling factor [Rahnella sp. Y9602]
 gi|321168833|gb|ADW74532.1| transcription-repair coupling factor [Rahnella sp. Y9602]
          Length = 1147

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 122/311 (39%), Gaps = 38/311 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           +  R     LLG +TGS      A++ E    P +++AP+   A +L  E +  F  N V
Sbjct: 9   LPERPGDNRLLGQLTGSACALECAQISERHTGPILLIAPDMQNALRLRDEIQQ-FTDNKV 67

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                +             +T      S +++I   R S+   L      I++  V+ + 
Sbjct: 68  LSIADW-------------ETLPYDSFSPHQEIISSRLSSLYQLPTMERGIIILPVNTLM 114

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   E      + +K G  + + +L + L +  Y+  D  +  G F   G  ++++P 
Sbjct: 115 QRVCPHEFLHGHALVMKKGQQLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPM 174

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E+  +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + 
Sbjct: 175 GSEE-PYRIDFFDDEIDSLRIFDVDTQRTLSEVEHINLLPAHEF----PTDKNAIELFRS 229

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +             E +R  + +    + +        IE +          +P  TL
Sbjct: 230 QWRE----------KFEVRRDAEHV---YQQVSKGTFPAGIEYWQPLFFS----QPLTTL 272

Query: 462 FEYIPEDSLLF 472
           F Y+PE++L+ 
Sbjct: 273 FSYLPENTLVL 283



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRMAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E  ++ L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKASQRLAELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAM 922


>gi|77360776|ref|YP_340351.1| transcription-repair ATP-dependent coupling factor
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76875687|emb|CAI86908.1| transcription-repair ATP-dependent coupling factor
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 1157

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 110/298 (36%), Gaps = 37/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           ++GSG +  +A+ ++      +++ P+   A +L +E +   P N V  F          
Sbjct: 24  LSGSGLSIAIAEGVKQQDNLVLIVTPDTPSALRLETELEYLLPDNPVMIF---------- 73

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLL-ERNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R +   +L  E+   ++V   + +             
Sbjct: 74  ---PDWETLPYDHFSPHQDIISARLATLNTLKNEQQSVLIVPVSTLMLRTAPASFIYGST 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           +  K+GD ++     ++L +  Y      +  G + + G  ++++P       +R+  F 
Sbjct: 131 INFKVGDKLDTHNFRNNLEQAGYLNVQQVMEHGEYAIRGSIVDLYPM-GSPHPFRLDFFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++++ I  F   T +    V+ I++     + T    +             R+   EK G
Sbjct: 190 DELDSIRLFDVETQRSDEKVDKIELLPAHEFPTNEADIERF----------RIAYREKFG 239

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
              +   +  +++              IE Y          E   T+F+Y+PE + + 
Sbjct: 240 ASAQQDSVYMQVSK-------GNWPAGIEYYMPLFF-----EQLATIFDYLPETTTVM 285



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 68/178 (38%), Gaps = 7/178 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+    +  VE + + +    ++G 
Sbjct: 760 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRQRDVELIREAVLREIKRGG 819

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E + + + E          H +++  E  +I+ D    K++VLV   +
Sbjct: 820 QVYFLHNNVETIERVAQEISEWVPEASVTSAHGQMREQELEQIMADFYHQKYNVLVCTTI 879

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+DIP    + +  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 880 IETGIDIPTANTIIMDRADKLGLAQ----LHQLRGRVGRSHHQAYAYLLTGDPKALSK 933


>gi|74317674|ref|YP_315414.1| transcription-repair coupling factor [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057169|gb|AAZ97609.1| transcription-repair coupling factor [Thiobacillus denitrificans
           ATCC 25259]
          Length = 1146

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 87/512 (16%), Positives = 164/512 (32%), Gaps = 74/512 (14%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
            G+ G+     +A+   ++  P +++  +   A +L  E + F P   V  F  + +   
Sbjct: 16  SGLAGAADALYLAEAARSVA-PLVIVCASAWDANRLTEELRWFDPALRVCAFPDW-ETLP 73

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQM 293
            + + P  D   E+ +++  QI R             D  VV+  + ++ +      +  
Sbjct: 74  YDNFSPHPDLLSERLATL-YQISR----------GEFDLAVVALSTALHRLAPPSFLAAH 122

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
              LK  D +++    + +    Y   +     G F V G  I++FP     V +R+ +F
Sbjct: 123 TFFLKQKDRLDEAAFRAQMTLGGYSNVNQVFAPGEFSVRGGLIDLFPMGSA-VPYRIDLF 181

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
            N+IE +  F   T + I  V  +++     +      +    +  +E  +         
Sbjct: 182 DNEIETLRAFDVDTQRSIYPVNEVRLLPAREFPLDEAGVTRFRQNFRERFE--------- 232

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
                  +L Q ++          +   IE Y          +   TLF+Y+P+ + L  
Sbjct: 233 -GDPSKSKLYQDVS-------NGLAPAGIEYYLPLFF-----DATATLFDYLPQPTRLVA 279

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
             +     Q         HR          L +   +RPL         P   +  AT  
Sbjct: 280 HGALDAAGQAFWSEAQGRHR----------LLAGDKDRPL--------LPPADLFLATDA 321

Query: 534 SWELEQCQGII-VEQIIRPTGLVDPPVEI-RSARTQVEDVYDEINLAAQQGLRILLTVLT 591
            +   +      V Q         PP+ + R     V  +   I+    +    L+   +
Sbjct: 322 FFSRAKSYERFDVAQAGDGLARPLPPISVDRREAHPVAKLRSFIDGFRGK---TLIVAPS 378

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
               E L EYL E  +                       G+  +L+    L EG    + 
Sbjct: 379 AGRRETLHEYLAEHGLDATPCDG----------WAGCEAGRERILLTHGPLAEGFVTHDE 428

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            L  I + +                R AR   
Sbjct: 429 ALAVITETELYAIPPKT-----RRAREARATQ 455



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 15/166 (9%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +GI    +I   P   +     +RS    +  + + +    ++
Sbjct: 740 VLTLTATPIPRTLAMSLEGIRDFSVIATAPQKRLAVKTFVRSFSGGL--IREAVLRELKR 797

Query: 582 GLRILLT---VLT-KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T + M E L + L E  IRV   H ++   E  +++RD    ++D+L+
Sbjct: 798 GGQVYFLHNEVSTIQNMRERLEKLLPEARIRVG--HGQMSERELEQVMRDFYQQRYDILL 855

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
              ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +
Sbjct: 856 CTTIIETGIDIPTANTILINRADKFGLAQ----LHQLRGRVGRSHH 897


>gi|220934531|ref|YP_002513430.1| transcription-repair coupling factor [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995841|gb|ACL72443.1| transcription-repair coupling factor [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 1157

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 92/532 (17%), Positives = 179/532 (33%), Gaps = 88/532 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+ +   MA+ +   +   +V+ P+   A  L  E + F   +++           P 
Sbjct: 25  LYGAARGLAMARALAGHKGLGVVITPDTREAETLARELEFFLGDDSL-----------PV 73

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
             +P  +T      S +E I   R      L +     +VV   + +  I         +
Sbjct: 74  LTLPDWETLPYDLFSPHEDIISQRLETLYRLPDLSRGILVVPVNTLMQRIAPRAWLQGRV 133

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L  GD +++  L  +L +  Y      +  G F V G  I++FP    +  +RV +  
Sbjct: 134 LMLANGDRLDRDALRRNLEQAGYHCVSQVMEHGEFAVRGSLIDLFPMGSLE-PYRVDLLD 192

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE I  F P + + + +V  +++     +         A+K  ++  + R    E + 
Sbjct: 193 DEIESIRSFDPESQRSLDSVNAVRLLPAHEFPMD----EAAIKGFRQRYRTR---FEGDP 245

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL--- 471
           +     R           +    +   IE Y          E   TLF+Y+P +  L   
Sbjct: 246 QASIIYR----------DVSQGMAPAGIEYYLPLFF-----EQMDTLFDYLPGNVRLIQV 290

Query: 472 --FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
               D +   + Q +  +    H +                RP        L P  I ++
Sbjct: 291 GGIEDTAAEFLAQAAQRHEQRRHDRE---------------RP-------ILSPEEIFLT 328

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ-------- 581
           A     +L    GI VE   RP  L   P  +      + D+   I  +           
Sbjct: 329 AEELKAQLTGRPGIRVE---RPEQLDATPGAVNFDVGALPDLRLHIRQSDPAASLKTFLD 385

Query: 582 --GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               R+L+   +    E L + L    +              +E  +    G   + + +
Sbjct: 386 GFDGRVLIAAESAGRREFLVDSLRPFGLP----------PTPVEDWQGFVSGDARLAITV 435

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
             + +G+ +  CGL  I +    G    +    +   R  R+ ++ +    D
Sbjct: 436 APVEDGMRMACCGLAVITEPALFGERAHQERRRK---RPTRDADAVISNLTD 484



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 72/179 (40%), Gaps = 13/179 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T  ++    I++  +Q  D  + + I    ++G
Sbjct: 759 MLTLTATPIPRTLNMALSGLRDLSIIATPPMERHA-IKTFISQWNDALIQEAITREIRRG 817

Query: 583 LRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++          E    ++ E +   +I +   H +++  E  +++ D    + +VLV 
Sbjct: 818 GQVYFLHNAVESIERKAREIAELVPGADIGIA--HGQMRESELEKVMLDFYHRRHNVLVC 875

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +            ++
Sbjct: 876 TTIVESGIDVPTANTIIIDRADKLGLSQ----LHQLRGRVGRSHHRAYAYLITPHPSAM 930


>gi|163856004|ref|YP_001630302.1| transcription-repair coupling factor [Bordetella petrii DSM 12804]
 gi|163259732|emb|CAP42033.1| transcription-repair coupling factor [Bordetella petrii]
          Length = 1153

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/348 (17%), Positives = 117/348 (33%), Gaps = 46/348 (13%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A A  L  +    +        GS   + +A +     RP +V+    + A +L  E  
Sbjct: 14  PATAATLSALKPGARYAQPR-PPGSADAWLLADLARQAARPLVVLTAAPLEAQRLADEIP 72

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DCI 273
            F P   V               +P  +T      S ++ +   R     +L++R  D +
Sbjct: 73  QFAPDLRV-------------RQLPDWETLPYDAFSPHQDLVSQRLHTLHALMQRTVDVL 119

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           +V   + +Y +      +      K  D +++  L + L    Y         G F + G
Sbjct: 120 LVPVTTALYRLAPPSFLAAYTFSFKQKDRLDEAALRAQLTLANYTHVTQVTAPGEFCLRG 179

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I++FP     V +R+ +F ++IE I  F   T + +  V  +++     +       N
Sbjct: 180 GLIDLFPMGSA-VPYRLDLFDDEIESIRSFDVDTQRSLYPVREVQLLPGREFPMDEAARN 238

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                 +EE +          R L  + +                   +E Y        
Sbjct: 239 RFRARFREEFE------GDPSRALPYKDIG-----------NGIPFAGVEYYLPLFF--- 278

Query: 454 PGEPPPTLFEYIPEDSLLF----VDESHVTIPQISGMYRG----DFHR 493
             +   TLF+Y+P +++      +D++     Q +    G    D  R
Sbjct: 279 --DATATLFDYLPAEAIAVTLGDIDDAVQRFTQDTASRYGFLKSDRER 324



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 73/189 (38%), Gaps = 19/189 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +GI    +I   P   +     +R        + + +    ++
Sbjct: 762 VLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTFVRREDG--STIREALLRELKR 819

Query: 582 GLRILLT---VLT-KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +       V T       + E + E  I V   H ++   E  ++++     +++VL+
Sbjct: 820 GGQAYFLHNEVETIHNRRARIEELVPEARIAVA--HGQMPERELEQVMKGFYQQRYNVLL 877

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA----DTI 693
              ++  G+D+P    + I  AD+ G  +    L Q  GR  R+ +           D I
Sbjct: 878 CTTIIETGIDVPTANTIVIHRADRFGLAQ----LHQLRGRVGRSHHQAYAYLLTPGEDAI 933

Query: 694 TKSIQLAID 702
           T + +  ++
Sbjct: 934 TSNAKKRLE 942


>gi|261822040|ref|YP_003260146.1| transcription-repair coupling factor [Pectobacterium wasabiae
           WPP163]
 gi|261606053|gb|ACX88539.1| transcription-repair coupling factor [Pectobacterium wasabiae
           WPP163]
          Length = 1150

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 121/311 (38%), Gaps = 38/311 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           +  +   Q LLG +TG+      A+++E      +++AP+   A +L  E + F      
Sbjct: 10  LPPKAGEQRLLGELTGAACAVECAEIVERHAGLVVLIAPDMQNALRLRDEIQQFTD---- 65

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                     Q    +P  +T      S +++I   R S    L      +++  V+ + 
Sbjct: 66  ----------QHVTTLPDWETLPYDSFSPHQEIISTRLSTLYQLPNMTRGVLILPVNTLM 115

Query: 283 GIGSVESYSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                 S+     + LK    + + +L S L +  Y+  D  +  G +   G  +++FP 
Sbjct: 116 QRVCPHSFLHGHALVLKKSQRLSRDKLRSQLEQAGYRSVDQVMEHGEYATRGALLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E+  +R+  F ++I+ +  F   T + +  V  I +     +    PT  TA++  + 
Sbjct: 176 GSEE-PYRIDFFDDEIDSLRLFDVDTQRTLNEVPHINLLPAHEF----PTDKTAIELFRS 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + + +           E +R  + I    + +        IE +          EP P+L
Sbjct: 231 QWREQ----------FEVRRDAEHI---YQQVSKGVWPAGIEYWQPLFFS----EPLPSL 273

Query: 462 FEYIPEDSLLF 472
           F Y P ++L+ 
Sbjct: 274 FSYFPNNTLIV 284



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     +  V + I     +
Sbjct: 752 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDNLM--VREAILRETLR 809

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E  T+ L E     R    H +++  E   ++ D    +F+VLV  
Sbjct: 810 GGQVYYLYNDVENIEKATQRLAELVPEARITIGHGQMRERELERVMNDFHHQRFNVLVCT 869

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 870 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAM 923


>gi|296271090|ref|YP_003653722.1| transcription-repair coupling factor [Thermobispora bispora DSM
           43833]
 gi|296093877|gb|ADG89829.1| transcription-repair coupling factor [Thermobispora bispora DSM
           43833]
          Length = 1164

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 80/485 (16%), Positives = 153/485 (31%), Gaps = 69/485 (14%)

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           + F +A +  A  RP + +   +  A  L +   +    + V  F ++ +    E   PR
Sbjct: 40  RPFVVAAL--ARIRPVLAVTATEREAEDLAAALDSLMDESGVAVFPAW-ETLPHERLSPR 96

Query: 241 TDTYIEKESSINEQIDRMRHS-----ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           +DT   + +     + R+ H      A   L      +       + G+G +E       
Sbjct: 97  SDTVGRRLAV----LRRLAHPVEGDPAAGPLRVVVAPVRAVLQPIVAGLGDLEPVR---- 148

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L+ GD  +  E+++ LV   Y R D+   RG   V G  +++FP   E+   R+  +G+
Sbjct: 149 -LRPGDEADLDEVVARLVDNGYHRVDMVERRGEVAVRGGLVDVFPP-TEEHPLRMEFWGD 206

Query: 356 DIEEISEFYPLTGQKIRNVET-IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
            +EEI  F     + +      +                 A      EL      L+   
Sbjct: 207 TVEEIRWFKVADQRSLEVAPEGLFAPPCRELPLTEEVRRRA-----RELAGEYPALKDV- 260

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                          L+ +      + +E ++  L G         L +++P  S + V 
Sbjct: 261 ---------------LDQIADGVPVEGMETFAPVLAGEM-----NLLLDHMPVRSAVVVC 300

Query: 475 ESHVTIPQISGMYRGDFHRKA-TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
           +      +   + R     K  +         + +D   + F     +            
Sbjct: 301 DPERIRGRAQELVRTAEEFKQASWITAALGGEAPIDLDAVAFRTLEEVHAH--------- 351

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
           + EL +    +        G+      +   R   E    +I    + G  ++L      
Sbjct: 352 ARELGRPWWSVAP---FGDGVELDVQGVDQYRGDTERALADIKGWLEAGKTVVLLSEGHG 408

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            AE L E L   ++  R +        R             V V    +  G   P+  +
Sbjct: 409 PAERLVELLRGVDVPARLVPEVADGPVRD-----------VVQVTTGRIAHGFVTPDVAV 457

Query: 654 VAILD 658
           +  LD
Sbjct: 458 LTHLD 462



 Score = 47.0 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 11/149 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + ++ PP E     T V     + +   I    
Sbjct: 761 VLAMSATPIPRTLEMGLTGIREM----STILTPPEERHPVLTFVGPYDEKQIAAAIRREL 816

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +        R  + +   L E     R    H ++   +  +I+ D     +DVLV
Sbjct: 817 MRDGQTFFVHNRVRSIDRVAARLAELVPEARIAVAHGQMNEAQLEKIMVDFWERAYDVLV 876

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLR 666
              ++  GLD+P    + +  AD  G  +
Sbjct: 877 CTTIVESGLDVPNANTLIVDRADSYGLAQ 905


>gi|120554850|ref|YP_959201.1| transcription-repair coupling factor [Marinobacter aquaeolei VT8]
 gi|120324699|gb|ABM19014.1| transcription-repair coupling factor [Marinobacter aquaeolei VT8]
          Length = 1173

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/322 (16%), Positives = 112/322 (34%), Gaps = 26/322 (8%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G      + +   A +   +V+  +   A QL    + F      E            
Sbjct: 28  LNGCADALAICESARAHKGLTLVITQSTSEAIQLEQSIRFFLGLPTDEDGAIITSDGIEL 87

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLL-ERNDCIVVSSVSCIYGIGSVESYSQMI 294
             +P  +T      S ++ I   R  +   L   R+  +VV + + ++ +          
Sbjct: 88  LSLPDWETLPYDLFSPHQDITSRRIRSLHRLPGTRHGILVVPARTLMHRLAPPSYLQGNT 147

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L++G +++       L    Y   D     G + V G  ++I+P    ++ +R+ +F 
Sbjct: 148 LLLEVGQTLDIDSWRMQLEAAGYHHTDNVYEHGEYAVRGAILDIYPM-GSNLPYRIDLFD 206

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I   E I++   + +   +   +            R    E   
Sbjct: 207 DEIETLRTFDPETQRSIDKTERIELLPANEFPWHKEARSGF----------RNRWFEYFP 256

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
              +   + Q +T+         +   IE Y          +   TLF+Y+P ++L+F  
Sbjct: 257 NADKDAPVYQDVTH-------GITPPGIEYYLPLFF-----DATATLFDYLPGNTLVFT- 303

Query: 475 ESHVTIPQISGMYRGDFHRKAT 496
            ++     ++        R   
Sbjct: 304 -ANGLNDAVNAFDAETRARYED 324



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 17/190 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L    G + +  I  T      + +++   Q +D    + I     +G
Sbjct: 772 MLTLTATPIPRTLNMAMGHLRDLSIIAT-PPARRLSVKTFVRQRDDAMVKEAILREILRG 830

Query: 583 LRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++      V T  + AEDL + + E  + V   H +++  +  +I+ D    +F+VLV 
Sbjct: 831 GQVYFLHNDVATIEKTAEDLRKLIPEARVGVA--HGQMRERQLEQIMSDFYHKRFNVLVC 888

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +           K   
Sbjct: 889 TTIVETGIDIPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPK--- 941

Query: 699 LAIDETTRRR 708
            AI    R+R
Sbjct: 942 -AISADARKR 950



 Score = 42.8 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 4/132 (3%)

Query: 95  SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQP 154
           +E+      +AL ++  +   LL         + +   +  +    F     +  + DQ 
Sbjct: 568 TERWSNAKQKALEKIRDTAAELLDVYARREARKGFQFEDPKEAYRAFAAGFPFEETPDQQ 627

Query: 155 AAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLY 210
            AI  + + +   R   +L+ G  G GKT      A +     +   V+ P  +LA Q Y
Sbjct: 628 VAIESVFEDMTSERPMDRLVCGDVGFGKTEVAMRAAFLATWSGKQVAVLVPTTLLAQQHY 687

Query: 211 SEFKNFFPHNAV 222
             F++ F    V
Sbjct: 688 ESFRDRFSDTPV 699


>gi|217970622|ref|YP_002355856.1| transcription-repair coupling factor [Thauera sp. MZ1T]
 gi|217507949|gb|ACK54960.1| transcription-repair coupling factor [Thauera sp. MZ1T]
          Length = 1157

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 84/514 (16%), Positives = 169/514 (32%), Gaps = 62/514 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +A++     R  +V+  N + A +L  E     P                 
Sbjct: 29  LAGSADALAIAQLASR-GRMLVVITANPLDAQRLQDEIAWVAPGLRAHL----------- 76

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV-VSSVSCIYGIGSVESYSQMI 294
             +P  +T      S ++ +   R S   ++      IV V + + +Y +      +   
Sbjct: 77  --LPDWETLPYDSFSPHQDLISERLSTLYAISRGETDIVLVPASTALYRMAPPGFLAAYT 134

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             LK G+ ++ ++  + +    Y      +  G F V G  +++FP     + +R+ +F 
Sbjct: 135 FFLKQGEKLDVEQFKAQMALAGYAHVTQVVSPGEFSVRGGLVDLFPM-GSPLPFRIDLFD 193

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           +++E I  F P T + +   + I++     +                  K R     +  
Sbjct: 194 DEVESIKTFDPDTQRTVYPTKEIRLLPAREFPLDD--------------KGRTRFRSRFR 239

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
              E       I  D   +    +   IE Y          +   TL +Y+P ++ + + 
Sbjct: 240 ETFEGDPTRASIYKD---VSNGIAPAGIEYYLPLFF-----DETATLLDYLPAETPVLL- 290

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPS-CMDNRPLRFEEWNCLRPTT--IVVSAT 531
             H  +P     +  D   +  L +     P    +   L  E +         + + A 
Sbjct: 291 --HRDVPAAIAEFWKDTRSRHDLLKGDRSRPVLAPEQLFLTDEAFFIALKNLPRLAIGAE 348

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
            G+      +        R   L  PP E+   R   + ++           R+LL   +
Sbjct: 349 VGA------KAGAEPAAARTDALALPPPEVAVERKATDPLHKLKAFLDGFDGRVLLLSDS 402

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
               E + E+  E ++R      E        +  D RL      +G+  L  G  +P  
Sbjct: 403 PGRRETMAEFFAEYDVR-----PEATADFGAFLDSDARLA-----LGVAPLARGFVLPAA 452

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            L  + +   E +  +  S ++   R A  +   
Sbjct: 453 RLAVLTET--ELYAATARSRVRRDARKAATMEGW 484



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
            M +DL E L E  I V   H ++   E   ++RD    + ++L+   ++  G++IP   
Sbjct: 838 NMKDDLEELLPEARIVVG--HGQLPERELERVMRDFTQQRANLLLCTTIIETGINIPTAN 895

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            + I  AD+ G  +    L Q  GR  R+ +
Sbjct: 896 TIIINRADRFGLAQ----LHQLRGRVGRSHH 922



 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 14/135 (10%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           ++ ++ +   +  +   L  L                      +    D+  F     + 
Sbjct: 565 EKAKKKAAMQVRDTAAELLALYAQR----------AARPGHRFDFKQHDLEAFAEAFGFE 614

Query: 149 PSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKI 204
            + DQ AAI  ++  + S     +L+ G  G GKT      A +  A  +  +V+ P  +
Sbjct: 615 TTPDQQAAIDAVVADMKSGRPMDRLVCGDVGFGKTEVALRAAFIAVADGKQVVVLCPTTL 674

Query: 205 LAAQLYSEFKNFFPH 219
           LA Q Y  F + F  
Sbjct: 675 LAEQHYQTFADRFAD 689


>gi|197302598|ref|ZP_03167653.1| hypothetical protein RUMLAC_01327 [Ruminococcus lactaris ATCC
           29176]
 gi|197298496|gb|EDY33041.1| hypothetical protein RUMLAC_01327 [Ruminococcus lactaris ATCC
           29176]
          Length = 1117

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 107/266 (40%), Gaps = 23/266 (8%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            ++++     E +  + G   S KT  M  + +  +    ++  ++  A Q Y E+K   
Sbjct: 15  QEIVQKRGKAEGILQIAGCVSSQKTHLMYALSDGFEYRV-IVFSSEEKAKQAYEEYK-ML 72

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE---RNDCIV 274
             N   Y              P  D            +   R    + L E   R    V
Sbjct: 73  EENTFLY--------------PAKDLLFYHADIKGAALTGKRMEVLKKLTEKKNREPVTV 118

Query: 275 VSSVSC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           +++    + G+ S E   +  ++++ G  ++ ++L   LV   Y+R+      G F V G
Sbjct: 119 ITTADAFLDGLPSKEKLWESRIEIEAGAVIDFQKLQEELVHLGYERESQIEGPGQFAVRG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++++P   E++  R+ ++G++I+ I  F   + + + N+E + IY  +  V  +    
Sbjct: 179 GILDVYP-LTEEIPVRIELWGDEIDSIRSFDVESQRSVENMEKVVIYPATENVEKKEQAV 237

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEA 419
           +  +Y  +E    L   ++  RL E 
Sbjct: 238 SFSEYFPKE--ESLFFFDEPVRLQET 261



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 74/186 (39%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      I +  ++    +   P++        E + + I     +G 
Sbjct: 718 VLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDRMPIQTYVMEFNDEMIREAIERELSRGG 777

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++           D+   + +      V + H ++   E  +I+ D   G+ DVLV   +
Sbjct: 778 QVYYVYNRVEDIADVAGRVQKLVPGASVSFAHGQMSERELEDIMYDFINGEIDVLVSTTI 837

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-- 699
           +  GLDI     + I DAD+ G L     L   +GR++R   + ++   D + K +    
Sbjct: 838 IETGLDIANANTMIIQDADRFG-LSQLYQLRGRVGRSSRMAYAFLLYRRDKLLKEVAEKR 896

Query: 700 --AIDE 703
             AI E
Sbjct: 897 LAAIRE 902


>gi|304408993|ref|ZP_07390614.1| transcription-repair coupling factor [Shewanella baltica OS183]
 gi|307302996|ref|ZP_07582751.1| transcription-repair coupling factor [Shewanella baltica BA175]
 gi|304352814|gb|EFM17211.1| transcription-repair coupling factor [Shewanella baltica OS183]
 gi|306913356|gb|EFN43778.1| transcription-repair coupling factor [Shewanella baltica BA175]
          Length = 1165

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/334 (17%), Positives = 127/334 (38%), Gaps = 36/334 (10%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            + +  ++Q L  V G  +  T+A +    +   +V+  +   A  L  E         +
Sbjct: 11  AVKNGNQIQTLSTVGGVCQAVTLASLARQHKGTTLVVTSDTPSALSLELELSYLLSKTGI 70

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCI 281
           +               P  +T      S ++ +   R      L +   + ++V   + +
Sbjct: 71  K-----------VRLFPDRETLPYDSFSPHQDLISQRLETLSQLSQIEQNIVIVPVTTLM 119

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +      S  +  LK GDS +  ++   L    Y   +     G F + G  ++IFP+
Sbjct: 120 MRLPPKAYLSANVFVLKKGDSYKLHDVRQHLTDTGYHSVEQVYEHGEFAIRGSILDIFPT 179

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
            + ++  R+ +F  ++E I  F P T + ++ V++I++     +    PT ++A++  ++
Sbjct: 180 GM-NMPLRIELFDEEVETIRHFDPETQRSLQPVDSIRLLPAKEF----PTDSSAIEGFRQ 234

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             + R   + K     E + + Q ++  L           IENY          +   TL
Sbjct: 235 RYRRRFEVIVK-----EPESVYQLVSRSL-------MPAGIENYLPLFF-----DDTATL 277

Query: 462 FEYIPEDSLLFV--DESHVTIPQISGMYRGDFHR 493
           F+Y+P+D+ L    D        +  +      R
Sbjct: 278 FDYLPKDTQLVTLGDIEKSARAHLQEVEHRYQDR 311



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 87/280 (31%), Gaps = 70/280 (25%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPT-----------GLVDPPVEIRSA-------RT 566
            + ++ATP    L      + +  I  T                P  +R A         
Sbjct: 762 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGG 821

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           QV  +++ +    +    I+             + L E  + V   H +++  +   ++ 
Sbjct: 822 QVYYLHNNVESIEKCAQGII-------------DLLPEARVVVA--HGQMRERDLERVMS 866

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D    +F+VLV   ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +   
Sbjct: 867 DFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQ----LHQLRGRVGRSHHQAY 922

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
                   K +                        P +   K +E ID +    A     
Sbjct: 923 AYLMTPHPKRM-----------------------TPDA--RKRLEAIDALEDLGAGFMLA 957

Query: 747 SIDAQ---QLSLSKKKGKAHLKS----LRKQMHLAA-DNL 778
           + D +      L   +   H+      L  +M  AA   L
Sbjct: 958 TQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLEAAVKAL 997


>gi|254229022|ref|ZP_04922443.1| transcription-repair coupling factor [Vibrio sp. Ex25]
 gi|262394765|ref|YP_003286619.1| transcription-repair coupling factor [Vibrio sp. Ex25]
 gi|151938490|gb|EDN57327.1| transcription-repair coupling factor [Vibrio sp. Ex25]
 gi|262338359|gb|ACY52154.1| transcription-repair coupling factor [Vibrio sp. Ex25]
          Length = 1153

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 99/531 (18%), Positives = 203/531 (38%), Gaps = 77/531 (14%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
              +K Q L  + G+     +A++ +     ++++ P+  +A +L +E    F    V  
Sbjct: 14  ERGDKKQ-LGNLPGAALPLAIAELAKQHSSHSLLIVPDPQIALKLQAEI-EQFTDQTVSL 71

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
           F  + +    + + P  +        I+E+I R+     +   +RN   +V   + +   
Sbjct: 72  FPDW-ETLPYDNFSPHQEI-------ISERIARL----YQLPSQRNGITIVPVSTVLQRQ 119

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
              +   Q  + +K GD +  ++L   L    Y+  D     G +   G  +++FP   +
Sbjct: 120 SPRDFLLQHTLMVKTGDRLSLEKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSD 179

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           D  +R+  F ++I+ I  F P   + I +++ I++     + T +     A++  +   +
Sbjct: 180 D-PYRIDFFDDEIDTIRTFDPENQRSIDDIQQIQLLPAHEFPTTKE----AIEDFRTRWR 234

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            +           EA+R  + I      +        IE +          +   TLFEY
Sbjct: 235 TQ----------FEARREPESIYM---QVTKGTWPPGIEYWQPLFF-----DHTETLFEY 276

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +PEDS +    ++  I      +  D        EY +        RPL       L P 
Sbjct: 277 LPEDSQVI---TYGDIESAVDTFLTD-------VEYRYDQKKVDPLRPL-------LTPE 319

Query: 525 TIVVSATPGSWELEQ--CQGIIVEQIIRPTGLVDPPVEIRSART---QVEDVYDEINLAA 579
            + +       +L+Q     + +E++++  G  + PV+  +      Q ++    +   +
Sbjct: 320 QLWLKKDELFSQLKQLPMAQLSLEKVVKRAGRQNLPVQSLAELGVQQQNKEPLSRLRQFS 379

Query: 580 QQ-GLRILLTVLTKRMAEDLTEYLYERNIRVR-YMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +Q   +I+ +V ++   E LTE L  + I+VR  +H  +           L  G    L+
Sbjct: 380 EQFSGKIVFSVESEGRREALTELL--QGIKVRPVVHGSLYQ--------ALDSGDRFSLI 429

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
                  G    E     I ++D  G       +IQ   +  + VNS  ++
Sbjct: 430 L-GAAEHGFIHEELNFALICESDLLG-----DRVIQRRRKDKKAVNSDTVI 474



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 7/112 (6%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           + AEDL + + E  I V   H +++  E   I+ D    +F+VLV   ++  G+D+P   
Sbjct: 827 KTAEDLQKLIPEARITVA--HGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTAN 884

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-AIDE 703
            + +  AD  G  +    L Q  GR  R+ +           K++   AI  
Sbjct: 885 TIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKR 932


>gi|144897122|emb|CAM73986.1| Excinuclease ABC, B subunit [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 185

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/122 (40%), Positives = 76/122 (62%), Gaps = 1/122 (0%)

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
           AARN++ +VILYAD +T S++ AIDET RRREKQ  +N  H I P+ +K+ + +V++ + 
Sbjct: 42  AARNIDGRVILYADKMTDSLKYAIDETNRRREKQQAYNVAHGITPEGIKKAVGDVLESVY 101

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
            +D  T + + D+           A    + K+M  AA +L FEEAAR+RDE++RL++  
Sbjct: 102 EKDYLTVD-TGDSGLAHGVGHNLAAVKADIEKRMKAAAADLEFEEAARLRDELRRLEAQE 160

Query: 798 YF 799
             
Sbjct: 161 LG 162


>gi|326778864|ref|ZP_08238129.1| transcription-repair coupling factor [Streptomyces cf. griseus
           XylebKG-1]
 gi|326659197|gb|EGE44043.1| transcription-repair coupling factor [Streptomyces cf. griseus
           XylebKG-1]
          Length = 1177

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 81/555 (14%), Positives = 166/555 (29%), Gaps = 72/555 (12%)

Query: 155 AAIAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
            A+A+ +K      +  + L+G  G  + F +A +     R  + +      A  L +  
Sbjct: 14  PALAEAVKAAGDGHRAHVDLVGPPG-ARPFAVAALARQTGRTVLAVTATGREAEDLAAAL 72

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           +   P + +  + S+ +    E   PR+DT   + +     + R+ H            +
Sbjct: 73  RTLLPPDTIAEYPSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPRADDPETGPVSV 127

Query: 274 VVSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           VV+ +  +      G+G +E  +     L  G S +  E++ +L    Y R ++   RG 
Sbjct: 128 VVAPIRSVLQPQVKGLGELEPVA-----LAGGQSADLGEVVDALAAAAYSRVELVEKRGE 182

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVT 387
           F V G  +++FP   E+   RV  +G+++EEI  F     + +      +        + 
Sbjct: 183 FAVRGGILDVFPP-TEEHPLRVEFWGDEVEEIRYFKIADQRSLEVAAHGLWAPPCRELLL 241

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
                  A                      E   L  RI           + + +E+ + 
Sbjct: 242 TDEVRERAA--------------ALAEAHPELGELLGRIA-------EGIAVEGMESLAP 280

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYGFRL 504
            L           L + +P D++  V +          +    +         +  G   
Sbjct: 281 VLVDEMEL-----LLDVLPGDAMAIVCDPERVRTRAADLVATSQEFLQASWAASAGGGEA 335

Query: 505 P---SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           P          +            +  S +P + +        ++  +            
Sbjct: 336 PIDVGAASLWGIADVRDRARELDMMWWSISPFAADAADHDEDTLQLSMHAPEAY------ 389

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
              R        +       G R +     + +A    E L    I  R      +    
Sbjct: 390 ---RGDTARALADTKGWLADGWRTVYVTEGQGLANRTVEVLSGEGIAARLTPDLTEVTPS 446

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           +            V V    + +G   P   L  + + D  G   +   L +   R  + 
Sbjct: 447 L------------VHVSCGAIEQGFVDPALKLAVLTETDLTGQRTATKDLGRMPARRRKT 494

Query: 682 VNSKVILYADTITKS 696
           ++   +   D I   
Sbjct: 495 IDPLTLEVGDYIVHE 509



 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 69/202 (34%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD-EINLAAQQGL 583
            + +SATP    LE     I E     + +  PP E     T V    + +I  A ++ L
Sbjct: 778 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEEKQIGAAVRREL 833

Query: 584 ----RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
               ++          +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 834 LREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSEAALEQVVVDFWEKKFDVLV 893

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R  +     +     K  
Sbjct: 894 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRDRGYAYFLYPPEKP- 948

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 949 ---LTETAHERLATIAQHTEMG 967


>gi|254281663|ref|ZP_04956631.1| transcription-repair coupling factor [gamma proteobacterium
           NOR51-B]
 gi|219677866|gb|EED34215.1| transcription-repair coupling factor [gamma proteobacterium
           NOR51-B]
          Length = 1155

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 119/327 (36%), Gaps = 42/327 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+ +T  +A++ E   RP +V+ PN   A  L  E   F   +             P 
Sbjct: 24  LYGAAETLCVAELAER-GRPLLVVTPNTSSALNLERELALFASADT------------PV 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ-MI 294
             +P  +T      S +  I   R SA   L + +  +V+  ++ +        Y     
Sbjct: 71  LALPDWETLPYDHFSPHPDIVSERLSAFYRLPKLDRGVVIVPITTLMQRTPPTWYVNGNT 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L+ G++ +  +++  L +  Y+  +     G + V G  ++IFP   E + +R+ +F 
Sbjct: 131 LNLRPGEAFDLNQVVRDLQRTGYRAVETVFEHGEYAVRGALLDIFPMGSE-LPYRIDLFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P + + +  +++I++     +      ++            ++    +  
Sbjct: 190 DEIESLRTFDPESQRTVERMDSIRLLPAREFPLTEEAIHRF----------QMNWFRQFE 239

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
              E              L         E Y          E   T+ +++P ++ +   
Sbjct: 240 GDAEQ-------CPTFTELCNGRVPGGAEYYLPLFF-----EETGTVLDFLPANTAVITV 287

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYG 501
            +H         +    HR    +EYG
Sbjct: 288 GNHH--GAAERFWEEITHRH---SEYG 309



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 68/180 (37%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L    G + +  II         ++          V + +     +G 
Sbjct: 754 ILTMTATPIPRTLNMALGGLRDLSIIATPPARRLSIKTFIREHNTALVKEAVLRETLRGG 813

Query: 584 RILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T  + A+ L   L + ++ +   H +++ +E   ++ D    +  VLV  
Sbjct: 814 QVYYLHNEVKTIAQTAQKLQTLLPDLSVGIA--HGQMREVELERVMSDFYHQRHHVLVCS 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +            S+  
Sbjct: 872 TIIETGIDIPNANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLSPPRSSLTR 927



 Score = 39.3 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT-- 184
           +W  +   +    F     +  + DQ AAI  +   + +     +L+ G  G GKT    
Sbjct: 587 AWEPDAWDRFCNQF----PFEETPDQAAAIEAVRNDMCAPGVMDRLVCGDVGFGKTEVAM 642

Query: 185 -MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
             A +     +   V+ P  +LA Q ++ F++ F   +V
Sbjct: 643 RAAFLAARNGKQVAVLVPTTLLAQQHFNSFRDRFAGWSV 681


>gi|332671526|ref|YP_004454534.1| transcription-repair coupling factor [Cellulomonas fimi ATCC 484]
 gi|332340564|gb|AEE47147.1| transcription-repair coupling factor [Cellulomonas fimi ATCC 484]
          Length = 1222

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 92/499 (18%), Positives = 161/499 (32%), Gaps = 76/499 (15%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            RP +V+      A +L +  + + P + V    ++ +    E   PR+DT   + +   
Sbjct: 58  GRPLVVVTATGRDADELAAALRCYLPEDVVAVLPAW-ETLPHERLSPRSDTVARRLAVF- 115

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKEL 308
               R+ H            +V+   + +     G+G +E  +     + +GD V+  +L
Sbjct: 116 ---RRLAHPGQDGPTGPVRVLVLPVRALLQPVVEGLGELEPVA-----VSVGDRVDLDDL 167

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
              LV   Y+R D+   RG F V G  +++FP   +D   RV ++G D+EEI  F     
Sbjct: 168 TERLVAAAYQRVDMVEKRGEFAVRGGILDVFPP-TDDHPLRVELWGEDVEEIRWFSVADQ 226

Query: 369 QKIRNVET-IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
           + +   +  +        +        A       L  RL                    
Sbjct: 227 RSLEVAQHGLWAPPCREILLTDEVRARA-----ASLAERLPGAVDM-------------- 267

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
             L+ L    + + +E+ +  L  R        + + +P+D+LL V +      +   + 
Sbjct: 268 --LDKLAQGIAVEGMESLAPALVERMVP-----VLDLVPDDALLVVADPERVRRRAHDLV 320

Query: 488 RGDFH------------RKATLAEYGFRLPSCMDNRPL---RFEEWNCLRPTTI-----V 527
                                L        S  + R L   R   W  L   T+     V
Sbjct: 321 ATTEEFLAAAWTSAAAGAATPLDLSAASFASFAEVRALAAVRGLGWWTLSGFTLDADAAV 380

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQVEDVYDEINLAAQQGLR 584
            +  PGS   +      V      +      V  R       +V     ++    QQG R
Sbjct: 381 AAGAPGSDAGDAPAAAPVAVDDLASDGRTVVVAARDVERYRGEVARAVADVRALQQQGWR 440

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL       A+ + E L   ++  R +       E              VLV    +  
Sbjct: 441 LLLATEGHGPAQRMVEQLKASDVPARLVTGVDDEPE-----------GGVVLVVPAPVGP 489

Query: 645 GLDIPECGLVAILDADKEG 663
           G       L    +AD  G
Sbjct: 490 GFVAEPLHLAVFSEADLTG 508



 Score = 42.8 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 64/202 (31%), Gaps = 19/202 (9%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQVEDVYDEINLAAQ- 580
             + +SATP    LE     I E     T    PP E           ++      +  + 
Sbjct: 815  VLAMSATPIPRTLEMAVTGIREMSTLAT----PPEERHPVLTFVGAYDEKQISAAVRREL 870

Query: 581  -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
             +  ++          E     + E     R    H ++   +   +I D    +FDVLV
Sbjct: 871  LREGQVFYVHNKVDSIERAASRISELVPEARVAVAHGKMNEHQLERVIVDFWEKRFDVLV 930

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  GLDI     + +  AD  G  +    L Q  GR  R        +     K  
Sbjct: 931  CTTIVETGLDISNANTLILERADLLGLSQ----LHQLRGRVGRGRERAYAYFLYPPEKP- 985

Query: 698  QLAIDETTRRREKQLEHNKKHN 719
               + ET   R + +  N    
Sbjct: 986  ---LTETAHDRLQTIAANTDLG 1004


>gi|108762520|ref|YP_629274.1| transcription-repair coupling factor [Myxococcus xanthus DK 1622]
 gi|108466400|gb|ABF91585.1| transcription-repair coupling factor [Myxococcus xanthus DK 1622]
          Length = 1188

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 91/533 (17%), Positives = 191/533 (35%), Gaps = 47/533 (8%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           T F    D   +GD P   AQ++  + + ++V+   G+ G+ +   +A++  A++ P + 
Sbjct: 3   TPFIQTQDGGAAGD-P--FAQVVDELRAGQRVRT-QGLKGAARGHVLARLHGALRAPLVC 58

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A ++  A  L ++   F                     +P  +     E S +      
Sbjct: 59  VAVDEEAADALAADLSFFLGGQGSLL-------APRVLRLPADEVLPYDEVSPDAAAVTE 111

Query: 259 RHSATRSLLE--RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           R  A   L +  R   +V+S  +    +  +     +  ++ +G   ++  L   LV+  
Sbjct: 112 RLGALFHLGQGTRFPALVLSVRALHRKVLPLAVMRALAARVAVGQDFDRDSLARRLVRMG 171

Query: 317 YKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           Y+   +    GTF V GD +++F P +  D   R+  FG+ IE I  F P + + +  ++
Sbjct: 172 YQNSPLVEDVGTFSVRGDLLDVFSPLY--DKPVRLEFFGDTIESIRAFDPQSQRTVDALK 229

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            + +      +    T   A    +  +  R+         L   +L +++    + L  
Sbjct: 230 EVDLVPAREVLLTDETRPRAESAARA-VADRI--------NLPTIKLREQL----DALRE 276

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYI----PEDSLLFVDESHVTIPQISGMYRGDF 491
                 +E           G    T+F+++    PE  ++++D+  +   + +     + 
Sbjct: 277 GLPGFGMEGLLP--GFFEDGL--STVFDFLRDWSPEAPVIYLDDP-LGQDRAADTLWEEL 331

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE-QIIR 550
            R    AE    L        L  E+ N    +  V+    G   L Q +   V      
Sbjct: 332 ERSHGAAEARQELICPPLEHFLSREDVNQRMQSFRVLEG--GGLSLAQTERPPVHFSFGG 389

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
              L +  +        +  + + +    +  +  ++   T   A+ L   L +RN+ V+
Sbjct: 390 TQDLREAILAHHGEEGALSPLVERLERWRELRVACVVACGTLSQADRLKRLLMDRNVMVK 449

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            +H+E            +R   F        +  G      GL  + D +  G
Sbjct: 450 -VHTEPLEDAVALYEPSIRAHLF-----TGEVSHGFVDGPGGLAVLADEEIFG 496



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 72/190 (37%), Gaps = 17/190 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  I  T   D    IR+   + ED    + I     +G
Sbjct: 793 VLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRA-IRTFVMKYEDTVVKEAIEREVARG 851

Query: 583 LRILLT---VLTKRMAE-DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++      V +    E  L   + + +I V   H ++   +  +++      K+ VL+ 
Sbjct: 852 GQVFFVHNRVESLPSIETQLRALVPQVSIGVA--HGQMGEGQLEKVMLAFTEKKYQVLLC 909

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +++  G+DI     + +  AD+ G  +    L Q  GR  R+                +
Sbjct: 910 TSIIESGIDISSANTMIVNRADQFGLAQ----LYQLRGRVGRSKERAYAYLLVP----SR 961

Query: 699 LAIDETTRRR 708
            A+ +  +RR
Sbjct: 962 RAVTKDAQRR 971



 Score = 42.8 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 4/120 (3%)

Query: 107 ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS 166
            +L++    LL+       H   + +   +    F+   ++  + DQ  AI  +L  +  
Sbjct: 601 EQLLKMAAELLQIAAARKAHPGHAFSAPDRYFAQFEADFEFEETPDQAKAIEDVLADMQK 660

Query: 167 REK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            E   +L+ G  G GKT   M    +A   ++   V+ P  +LA Q +  FK  F    V
Sbjct: 661 PEPMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVLVPTTVLAQQHFLSFKKRFADYPV 720


>gi|83593061|ref|YP_426813.1| transcription-repair coupling factor [Rhodospirillum rubrum ATCC
           11170]
 gi|83575975|gb|ABC22526.1| Transcription-repair coupling factor [Rhodospirillum rubrum ATCC
           11170]
          Length = 1177

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 99/545 (18%), Positives = 186/545 (34%), Gaps = 79/545 (14%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV-MAPNKILAAQLYSEFKNF 216
             LL+ +    +++   G+        + ++      PA++ +A + +  A+L      F
Sbjct: 2   KNLLESLAVGRRIEA-AGLPEGFDALVLGELAARPGVPAVLHVARDDVRLARLAETIAFF 60

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC---- 272
            P   +  F             P  D       S N +I   R      L E        
Sbjct: 61  HPAVEILEF-------------PAWDCVPYDRVSPNVEIVARRLETLSRLSEEPTRQPGG 107

Query: 273 -IVVSSVSCIYGIGSVESYSQM-IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            +V+++ S I          +  +   ++G  ++  +LL  L +  Y R +  +  G + 
Sbjct: 108 RLVLTTASAILQRVPPRQILERGVFSARVGGRLDLGKLLDHLARHGYGRSEQVMEPGEYA 167

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V G  ++IFP    +   R+ +FG++++ +  F P++ +     + + +   S  V  + 
Sbjct: 168 VRGGIVDIFPPGAPE-PLRLDLFGDELDSLRSFDPVSQRTTGQRDALILRPMSEVVLDKE 226

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
           +++            R    E  G    A  L        E +        +E++     
Sbjct: 227 SISRF----------RSGYRELFGTPSAADAL-------YEAISAGLPFMGMEHWLPLFH 269

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDE-----SHVTIPQISGMYR--------GDFHRKATL 497
                E   TLF Y+P D  + +D            QI   +         GD  + +  
Sbjct: 270 -----EGMDTLFAYVP-DGPVTLDPGLDGALRSRQDQIFEYFEARRLMESVGDGAKASEK 323

Query: 498 AEYG---FRLPSCMDNRPLRFEEWNCL---RPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
              G     LP       L  +E+      RP     SA      +   +G++ + + RP
Sbjct: 324 PGGGMIYHALPPP--RMFLEEDEFLRHCAGRPGAAF-SAYAAPD-VATEKGVVGDFLGRP 379

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
            G     +  R+     + + D        G R++LT  T    E +T  L E  +    
Sbjct: 380 -GHEFADIRARAGGNVFDALRDHAQALRAAGKRVVLTAATMGARERMTGVLREHGL---- 434

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
             S + T         L   K   +V   +L  G + P+  L  I +AD  G   S+   
Sbjct: 435 --SPIVTA--ETWAEALERAKKATVVLTLILDRGFETPD--LAVISEADVLGDRLSRPVR 488

Query: 672 IQTIG 676
            + +G
Sbjct: 489 KKKLG 493



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 56/148 (37%), Gaps = 7/148 (4%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
             + ++ATP    L+     + E  I  T  VD       +      V  V + I     
Sbjct: 775 HVLTLTATPIPRTLQLALTGVREMSIIATPPVDRLAVRTFVLPFDPVV--VREAILRERF 832

Query: 581 QGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G +           + + E L     +IR    H ++      E++     G++DVLV 
Sbjct: 833 RGGQCFYVCPRLTDIDKVMERLTTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVA 892

Query: 639 INLLREGLDIPECGLVAILDADKEGFLR 666
            N++  GLDIP    + I  AD  G  +
Sbjct: 893 TNIVESGLDIPRANTIIIHRADMFGLAQ 920


>gi|153000915|ref|YP_001366596.1| transcription-repair coupling factor [Shewanella baltica OS185]
 gi|151365533|gb|ABS08533.1| transcription-repair coupling factor [Shewanella baltica OS185]
          Length = 1162

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/336 (18%), Positives = 127/336 (37%), Gaps = 40/336 (11%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN-- 220
            + +  ++Q L  V G  +  T+A +    +   +V+  +   A  L  E          
Sbjct: 11  AVKNGNQIQTLSTVGGVCQAVTLASLARQHKGTTLVVTSDTPSALSLELELSYLLSKTGL 70

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVS 279
            V  F             P  +T      S ++ +   R      L +   + ++V   +
Sbjct: 71  KVRLF-------------PDRETLPYDSFSPHQDLISQRLETLSQLSQIEQNIVIVPVTT 117

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
            +  +      S  +  LK GDS +  ++   L    Y   +     G F + G  ++IF
Sbjct: 118 LMMRLPPKAYLSANVFVLKKGDSYKLHDVRQHLTDTGYHSVEQVYEHGEFAIRGSILDIF 177

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P+ + ++  R+ +F  ++E I  F P T + ++ V++I++     +    PT ++A++  
Sbjct: 178 PTGM-NMPLRIELFDEEVETIRHFDPETQRSLQPVDSIRLLPAKEF----PTDSSAIEGF 232

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
           ++  + R   + K     E + + Q ++  L           IENY          +   
Sbjct: 233 RQRYRRRFEVIVK-----EPESVYQLVSRSL-------MPAGIENYLPLFF-----DDTA 275

Query: 460 TLFEYIPEDSLLFV--DESHVTIPQISGMYRGDFHR 493
           TLF+Y+P+D+ L    D        +  +      R
Sbjct: 276 TLFDYLPKDTQLVTLGDIEKSARAHLQEVEHRYQDR 311



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 87/280 (31%), Gaps = 70/280 (25%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPT-----------GLVDPPVEIRSA-------RT 566
            + ++ATP    L      + +  I  T                P  +R A         
Sbjct: 762 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGG 821

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           QV  +++ +    +    I+             + L E  + V   H +++  +   ++ 
Sbjct: 822 QVYYLHNNVESIEKCAQGII-------------DLLPEARVVVA--HGQMRERDLERVMS 866

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D    +F+VLV   ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +   
Sbjct: 867 DFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQ----LHQLRGRVGRSHHQAY 922

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
                   K +                        P +   K +E ID +    A     
Sbjct: 923 AYLMTPHPKRM-----------------------TPDA--RKRLEAIDALEDLGAGFMLA 957

Query: 747 SIDAQ---QLSLSKKKGKAHLKS----LRKQMHLAA-DNL 778
           + D +      L   +   H+      L  +M  AA   L
Sbjct: 958 TQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLEAAVKAL 997


>gi|116626459|ref|YP_828615.1| transcription-repair coupling factor [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229621|gb|ABJ88330.1| transcription-repair coupling factor [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 1141

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 100/507 (19%), Positives = 175/507 (34%), Gaps = 63/507 (12%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           +L+ + + E    L G+T + K      + ++  RP I++      A  L      FF  
Sbjct: 1   MLRRVSAGENAS-LSGLTTTAKALYAVLLWQSSGRPLIIVVDGNKQAEALAEAVNTFFS- 58

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV- 278
                 +   D Y P   +P  D    +  S + +I   R     SL  +   I +  V 
Sbjct: 59  -----LLVADDKYGP-QLLPALDVLPMQALSPHAEICEQRAIGLWSLATKRSPITIMPVT 112

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           S +  I   + Y Q+ ++L++G+ +  +E+++ L    Y R++   + G + V G  +++
Sbjct: 113 SALLRIEPGDFYRQLALRLRVGEELPLEEVVAHLESIGYTRREPVEMVGEYSVRGGILDV 172

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP   +    R+ +FG+ +E I  F   + + +  VE   +   + Y   RP L      
Sbjct: 173 FPPEAQ-KPVRIDLFGDQVESIRRFDVESQRSVLKVEDCLLLPLTEYQKSRPFLV----- 226

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
              EL   + E +  GR L                    +    E  +  L  RN     
Sbjct: 227 ---ELNELMHEADIPGRDLPP---------------PGETFPGWELIAPMLRPRNA--SV 266

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
             L     E  ++  DE    +        G   R  T  E   R P+   +R   F  W
Sbjct: 267 FGLL----EKPVVIWDEPEQVL--------GAAKRLWTRLEQIERSPAYDPDR--IFFRW 312

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-VEIRSAR---TQVEDVYDE 574
             L        A  G     Q +   ++    PTG      V  R +      ++    E
Sbjct: 313 EDLEKQ-----AGAGP----QVKFQQIDIGWSPTGEATSAHVPTRPSMTFHGNIQVAIAE 363

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY-MHSEVKTLERIEIIRDLRLGKF 633
                + G ++          E + + L E  I  +  + +   T   +     L     
Sbjct: 364 ARTLVESGQKVAFFASATGELERMADILNEYGIPYQLGLETSESTPAYLAQRAYLSGSSA 423

Query: 634 DVLVGINLLREGLDIPECGLVAILDAD 660
            + +   L+R G   PE  LV     D
Sbjct: 424 SIYLVKGLIRHGTAFPESKLVLFGSED 450



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 62/187 (33%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            I +SATP    L     G+    +I         +    A  Q E +   + L   +G 
Sbjct: 752 VISMSATPIPRTLHMSLLGLRDMSVIETPPKDRLAIHTVVAPYQPELIRQALELELGRGG 811

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++                L E     R    H ++   E  + +      +FD+LV   +
Sbjct: 812 QVYFLHNRVDSIWMRAASLQELVPGARIGVGHGQMGEAELEKTMLQFMRHEFDILVCTTI 871

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + I +A++ G       L Q  GR  R+                   +
Sbjct: 872 IENGLDIPLANTMIIENAERYGLSE----LYQLRGRVGRSNRRAYAYLLVPPDTE----L 923

Query: 702 DETTRRR 708
            E  R+R
Sbjct: 924 TEIARKR 930



 Score = 45.5 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 94/229 (41%), Gaps = 14/229 (6%)

Query: 75  KGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNH 134
           +G  +++ ++      T   ++  +   ++ +A  +     L  + K+       S +N 
Sbjct: 534 RGGGETKPALDRMGGATWTRTKGRIKAKMRDMADELLK---LYASRKMAEGFNYSSDSNW 590

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM 192
            ++   F+   ++ P+ DQ  AI+++ + + S +   +LL G  G GKT   M    +A+
Sbjct: 591 QRE---FEDAFEFSPTRDQLTAISEIKRDMESTQPMDRLLCGDVGYGKTEVVMRAAFKAL 647

Query: 193 --QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
              +  +V+AP  +LA Q +  FK  F    V   +        E      D     E  
Sbjct: 648 GDGKQVVVLAPTTVLAFQHFETFKRRFQPFPVRVEMFSRFRSPKEIKAGLVDLA---EGK 704

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
           I+  I   R   ++ ++ R+  +V+      +G+   E   QM   + +
Sbjct: 705 IDIAIGTHRLL-SQDVVMRDLGLVLVDEEQRFGVKHKERLKQMKRAVDV 752


>gi|209809474|ref|YP_002265012.1| transcription-repair coupling factor [Aliivibrio salmonicida
           LFI1238]
 gi|208011036|emb|CAQ81450.1| transcription-repair coupling factor [Aliivibrio salmonicida
           LFI1238]
          Length = 1151

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 125/298 (41%), Gaps = 38/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS     +A++ +    P +V      LA +L +E  N F   +VE F  + +    +
Sbjct: 24  LTGSSLALAIAEIEQQHTGPIVVAVTEPQLAFRLQNEI-NQFSQQSVEVFPDW-ETLPYD 81

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMI 294
           ++ P  D        I++++ R+ H     L ++ +  ++  VS +    S +S+  +  
Sbjct: 82  SFSPHQDI-------ISDRLSRLYH-----LPKQKNGTLIVPVSTLLQRQSPQSFLHKHA 129

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K+GD +   +L   L K  Y   D  +  G +   G  +++FP     + +R+  F 
Sbjct: 130 LVVKVGDHLSFDKLKLQLEKSGYLHVDQVMSHGEYASRGSILDLFPM-GNSLPYRIDFFD 188

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I +F P   + I  V++I +     +    PT + A++  +   + R     +  
Sbjct: 189 DEIDTIRQFDPDNQRTIEEVKSINLLPAHEF----PTDDVAIEDFRIRWRQRFDARREPE 244

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
            +              + +        IE +          +   TLF+Y+P+++LL 
Sbjct: 245 SV-------------YQQISKGAWPAGIEYWQPLFF-----DETETLFDYLPDNTLLV 284



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 7/178 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      + +  I  T            R + +DV  + I    ++G 
Sbjct: 755 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVREKADDVIKEAILREIKRGG 814

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++ +        E   + +       R    H +++  E   I+ D    +F+VLV   +
Sbjct: 815 QVYVLHNNVETIESAAKDIENLIPEARVTLAHGQMRERELERIMGDFYHQRFNVLVCTTI 874

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+D+P    + +  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 875 IETGIDVPTANTIIMERADKLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKALSK 928


>gi|86160747|ref|YP_467532.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85777258|gb|ABC84095.1| transcription-repair coupling factor [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 1241

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 91/527 (17%), Positives = 175/527 (33%), Gaps = 60/527 (11%)

Query: 150 SGDQPAAIAQ--LLKGIHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKI 204
           +G+ P A A+  + + +  + +   + G+ G+ +   +  ++       R  + +A ++ 
Sbjct: 13  TGETPGASARDRVRRALEEKRRAD-VTGLVGAARGLLVRDLLAPGPGRARSVLAVAADEE 71

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
            A  L  +   F    AV    +       +A +P  D   ++      +++R+   A  
Sbjct: 72  EADALARDLAFFLGEGAVLRVPA-------DAVLPYDDLSPDR----GVEMERLAALARL 120

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL-KIGDSVEQKELLSSLVKQQYKRQDIG 323
            L       VV S   +          +    L   G  V+++ L + LV   + R  + 
Sbjct: 121 HLAPEQAKAVVVSARALARRTVPRRVFEAGSDLLGKGIEVDREALAAKLVLLGFARTPLV 180

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              GTF V G  ++++ S  +    R+  FG++IE    F P   +   +VE + +  + 
Sbjct: 181 EDPGTFAVRGGIVDLW-SPADPRPVRLEFFGDEIESCRAFDPSNQRSEGDVEEVLLCPSR 239

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
             +        A   ++ E+  R+             R   R+   L+ ++       +E
Sbjct: 240 EALFTEEGKEAAKTAVR-EVAERV------------NRPTSRVREVLDAIDAGTPFFGLE 286

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG-DFHRKATLAEYGF 502
                      G    TLF+Y+P  + ++VD        ++ +         A L     
Sbjct: 287 ALLPGFHPGGLG----TLFDYLPPGTAVYVDGVAAVEDALAELDEALAREHAAALDREEL 342

Query: 503 RLPSCMDNRPLRFEEWNCL------RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
            LP      P        L      R    + +  P    LE+  GI  E I    G   
Sbjct: 343 VLPPAAHFLPGAEARARALALPTVVRHQVWLGTEEPIRVALEETAGIRAE-IEGAHGE-- 399

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
                      +  +   +    ++G+  ++   T             R +  R  HS V
Sbjct: 400 --------EGALAPLTRRLEDWRKRGIAAVVAAGTAS-----ASERLRRLLEDRRQHSRV 446

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            T       R+L      V V    +  G      GL  + D +  G
Sbjct: 447 HTGP-PGAPRELYDPAVHVHVFAGEISAGFVDAAAGLAVVSDEEIFG 492



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 71/193 (36%), Gaps = 13/193 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T   D    IR+   + +   V + I    ++G
Sbjct: 796 VLTLTATPIPRTLHMSLAGVRDLSIIATPPEDRRA-IRTFVMKFDPAAVKEAIETELKRG 854

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       R    +  +L E   + R    H ++   +   ++      + DVL+  +
Sbjct: 855 GQVFFVHNRVRSIHAMQRFLGELVPKARVGVAHGQMGEGKLEHVMTQFVDKELDVLLATS 914

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD----TITKS 696
           ++  GLDIP    + +  AD  G  +    L Q  GR  R+               +TK 
Sbjct: 915 IIESGLDIPSANTIIVNRADHFGLAQ----LYQIRGRVGRSRERAYAYLLVPARRPVTKD 970

Query: 697 IQLAIDETTRRRE 709
            Q  ++   R  E
Sbjct: 971 AQKRLEVLQRFSE 983



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 11/127 (8%)

Query: 107 ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS 166
            +L++    LL        H  ++     +    F+ +  +  + DQ  AI  +++ +  
Sbjct: 597 EQLLKMAAELLDIYAARAAHPGFAYPEPDELFREFEAEFPWEETPDQAKAIEDVVRDMRK 656

Query: 167 REK--------VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
             +         +L+ G  G GKT      A +    ++   V+ P  +LAAQ    F+ 
Sbjct: 657 GRQGPAAAAPMDRLVCGDVGYGKTEVAMRAAMLAVLAKKQVAVLVPTTVLAAQHERTFRE 716

Query: 216 FFPHNAV 222
            F    V
Sbjct: 717 RFKGYPV 723


>gi|37526705|ref|NP_930049.1| transcription-repair coupling factor [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786137|emb|CAE15189.1| transcription-repair coupling factor (TRCF) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 1148

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 129/332 (38%), Gaps = 38/332 (11%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
             R   + L  +TG+      A++IE  Q P +++  +   A +L+ E  + F   +V+ 
Sbjct: 11  ERRGDNRQLGQLTGAACAVECAEIIERHQGPVVLITKDMQNALRLHDEI-HQFTDCSVDL 69

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYG 283
              +             +T      S +++I   R S    L       +++   + +  
Sbjct: 70  LSDW-------------ETLPYDSFSPHQEIISNRLSTLYRLPTMTKGVLILPINTLMQR 116

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +   E  +   + +     + + +L + L +  Y+  +  +  G F   G  +++FP   
Sbjct: 117 VCPHEYLNGHALVMHKDQRLSRDKLRTELEQAGYRSVEQVLEHGEFATRGALLDLFPMGS 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+  F ++I+ +  F   + + +  V+ I +     + T + T    ++  + + 
Sbjct: 177 E-HPYRIDFFDDEIDSLRIFDVDSQRTLTEVKQINLLPAHEFPTDKET----IELFRSQW 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           + R           E +R  + I    + +        IE +          +P P+LF+
Sbjct: 232 RER----------FEVRRDNEHI---YQQVSKGTLPAGIEYWQPLF----FNQPLPSLFD 274

Query: 464 YIPEDSLLFVDESHVTIPQI-SGMYRGDFHRK 494
           Y+P+++LL   E + +  +    + +    RK
Sbjct: 275 YLPDNTLLISQEINHSAERFWQDIQQRFESRK 306



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L      + +  I    P   +     +R   + +  V + I     +
Sbjct: 750 ILTLTATPIPRTLNMAMSSMRDLSIISTPPARRLAVKTFVREYDSLL--VREAILREVLR 807

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E     L E     R    H +++  +   ++ D    +F+VL+  
Sbjct: 808 GGQVYYLYNDVENIEKAKLRLEELVPEARIAIGHGQMRERDLERVMTDFHHQRFNVLICT 867

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 868 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAM 921


>gi|3914013|sp|O52236|MFD_MYXXA RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|2736296|gb|AAB94134.1| transcription-repair coupling factor [Myxococcus xanthus]
          Length = 1201

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 85/515 (16%), Positives = 184/515 (35%), Gaps = 44/515 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            AQ++  + + ++V+   G+ G+ +   +A++  A++ P + +A ++  A  L ++   F
Sbjct: 31  FAQVVDELRAGQRVRT-QGLKGAARGHVLARLHGALRAPLVCVAVDEEAADALAADLSFF 89

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE--RNDCIV 274
                                +P  +     E S +      R  A   L +  R   +V
Sbjct: 90  LGGQGSLL-------APRVLRLPADEVLPYDEVSPDAAAVTERLGALFHLGQGTRFPALV 142

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +S  +    +  +     +  ++ +G   ++  L   LV+  Y+   +    GTF V GD
Sbjct: 143 LSVRALHRKVLPLAVMRALAARVAVGQDFDRDSLARRLVRMGYQNSPLVEDVGTFSVRGD 202

Query: 335 SIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
            +++F P +  D   R+  FG+ IE I  F P + + +  ++ + +      +    T  
Sbjct: 203 LLDVFSPLY--DKPVRLEFFGDTIESIRAFDPQSQRTVDALKEVDLVPAREVLLTDETRP 260

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A    +  +  R+         L   +L +++    + L        +E          
Sbjct: 261 RAESAARA-VADRI--------NLPTIKLREQL----DALREGLPGFGMEGLLP--GFFE 305

Query: 454 PGEPPPTLFEYI----PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
            G    T+F+++    PE  ++++D+  +   + +     +  R    AE    L     
Sbjct: 306 DGL--STVFDFLRDWSPEAPVIYLDDP-LGQDRAADTLWEELERSHGAAEARQELICPPL 362

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQV 568
              L  E+ N    +  V+    G   L Q +   V         L +  +        +
Sbjct: 363 EHFLSREDVNQRMQSFRVLEG--GGLSLAQTERPPVHFSFGGTQDLREAILAHHGEEGAL 420

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             + + +    +  +  ++   T   A+ L   L +RN+ V+ +H+E            +
Sbjct: 421 SPLVERLERWRELRVACVVACGTLSQADRLKRLLMDRNVMVK-VHTEPLEDAVALYEPSI 479

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           R   F        +  G      GL  + D +  G
Sbjct: 480 RAHLF-----TGEVSHGFVDGPGGLAVLADEEIFG 509



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 72/190 (37%), Gaps = 17/190 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  I  T   D    IR+   + ED    + I     +G
Sbjct: 806 VLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRA-IRTFVMKYEDTVVKEAIEREVARG 864

Query: 583 LRILLT---VLTKRMAE-DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++      V +    E  L   + + +I V   H ++   +  +++      K+ VL+ 
Sbjct: 865 GQVFFVHNRVESLPSIETQLRALVPQVSIGVA--HGQMGEGQLEKVMLAFTEKKYQVLLC 922

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +++  G+DI     + +  AD+ G  +    L Q  GR  R+                +
Sbjct: 923 TSIIESGIDISSANTMIVNRADQFGLAQ----LYQLRGRVGRSKERAYAYLLVP----SR 974

Query: 699 LAIDETTRRR 708
            A+ +  +RR
Sbjct: 975 RAVTKDAQRR 984



 Score = 42.8 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 4/120 (3%)

Query: 107 ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS 166
            +L++    LL+       H   + +   +    F+   ++  + DQ  AI  +L  +  
Sbjct: 614 EQLLKMAAELLQIAAARKAHPGHAFSAPDRYFAQFEADFEFEETPDQAKAIEDVLADMQK 673

Query: 167 REK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            E   +L+ G  G GKT   M    +A   ++   V+ P  +LA Q +  FK  F    V
Sbjct: 674 PEPMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVLVPTTVLAQQHFLSFKKRFADYPV 733


>gi|314929229|gb|EFS93060.1| transcription-repair coupling factor [Propionibacterium acnes
           HL044PA1]
          Length = 1194

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 90/474 (18%), Positives = 162/474 (34%), Gaps = 72/474 (15%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR----PAIVMAPNKILAAQLYSEFKNF 216
           ++   +R    L L VT S +   +A +  A+      P +++      A +  +  + +
Sbjct: 21  VEDALTRRTPTLDLQVTASARPAVVAVLSRALDGSRRLPVLLVTSTFREAEESVATLETW 80

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              +AV Y+ S+ +    E   PRTDT   +   +       R   T         +VV+
Sbjct: 81  LGGDAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLR------RLCGTEG---EGPQVVVA 130

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
            V  +             V L +G+  +  EL + L+   Y R D+   RG F V G  +
Sbjct: 131 PVRSLLQPQVAGLGRIKPVHLAVGEEHDLTELATELINAAYSRVDMVERRGEFAVRGGIV 190

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY-ANSHYVTPRPTLNTA 395
           ++FP  LE    R+  FG+ IEE++ F     +         I       +      + A
Sbjct: 191 DVFPPVLE-HPVRIDFFGDKIEEMTSFAVADQRSTDETHEELICAPCRELILTDNVRSRA 249

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
                   K  L +  +   +LE              +    + + +E     L      
Sbjct: 250 --------KALLPDHPELADMLER-------------IGDGQAVEGMEALMPALVDEMEL 288

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA--------------TLAEYG 501
                L + +PE +++ + +  +   + + + R                      LA  G
Sbjct: 289 -----LVDVLPEHAMIVLSDPEMVRSRAADLVRTSEEFLGAGWAAAAGGGQAPIDLAASG 343

Query: 502 FRLPSCMDNRPLRFEE---WNCLRPTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVD 556
           +R  S    R    E    W  +   T+  SAT   G+ E          Q + P     
Sbjct: 344 YR--SLTRVRSHCLERGMAWWSMSSFTLDASATDVLGADEPATS----APQTVNPQ---- 393

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
             V +   R  VE    ++      G  ++L    +  A+ +TE L E ++  R
Sbjct: 394 -LVAVEPWRGDVEAAVKDLTTRLDDGWTVVLCAEGEGTAKRMTELLGEHHVAAR 446



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 65/205 (31%), Gaps = 25/205 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--------RTQVEDVYDEIN 576
            + +SATP    LE     I E     T    PP E              QV      I 
Sbjct: 791 VLAMSATPIPRTLEMAVTGIREMSTIAT----PPEERHPVLTFAGPYDEGQV---VAAIR 843

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
               +  ++       +  E     L E     R +  H ++   +   I+ D    + D
Sbjct: 844 RELAREGQVFYIHNRVQSIEKTAVKLRELVPEARIVTAHGQMNEKQLERIMVDFWERRAD 903

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV   ++  G+DIP    + I  AD  G  +    L Q  GR  R+       +     
Sbjct: 904 VLVCTTIVESGIDIPTANTLLIDRADLMGLSQ----LHQLRGRVGRSRARGYAYFLYPAD 959

Query: 695 KSIQLAIDETTRRREKQLEHNKKHN 719
           K     + +T   R   +  +    
Sbjct: 960 KP----LSQTAHDRLATMAAHTDLG 980


>gi|56460626|ref|YP_155907.1| transcription-repair coupling factor [Idiomarina loihiensis L2TR]
 gi|56179636|gb|AAV82358.1| Transcription-repair coupling factor, superfamily II helicase
           [Idiomarina loihiensis L2TR]
          Length = 1160

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/299 (17%), Positives = 111/299 (37%), Gaps = 34/299 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +A++I+A     +++  +   A +L  E         V+YF   +  Y  +
Sbjct: 24  LHGSSPAMAIARLIDATPGRVLIVTADANQAHRLEQE---------VKYFAGEHTEYHDD 74

Query: 236 -AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQM 293
               P  +T      S ++ I   R S    L + +   ++VS  + ++ I         
Sbjct: 75  ITLFPDWETLPYDSFSPHQDIISDRLSVLARLPDAKRGALIVSINTLLHRIAPTSFVQGQ 134

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            +Q++ G  ++  +L   L    Y+  +  +  G F   G  ++++P       +R+  F
Sbjct: 135 ALQIEKGQQLDSLKLRQQLENAGYRHVNQVMEHGEFSARGSILDLYPM-GSQTPYRLDFF 193

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
            ++++ I  F P T      ++ I +     +   +  +             R    E  
Sbjct: 194 DDEVDTIRPFDPETQLSKDPIDGINLLPAHEFPLTKTAIERF----------RANYREHF 243

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
               E + + Q+++              IE Y          E   +LF+Y+PED++L 
Sbjct: 244 EASTERESVYQQVSK-------GQLPGGIEYYLPLFF-----EETASLFDYLPEDTVLV 290



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 61/180 (33%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L      I +  I    P   +     +R        V + I     +
Sbjct: 762 ILTLTATPIPRTLNMAMNNIRDLSIIATPPAKRLAVKTFVREYDE--PTVREAILREILR 819

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E     +       R +  H +++  +   I+ D    +F+VLV  
Sbjct: 820 GGQVYFLHNNVDTIEKTAADIEALVPEARVVVAHGQMRERDLERIMSDFYHQRFNVLVCT 879

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + +  AD  G  +    + Q  GR  R+ +           K +  
Sbjct: 880 TIIETGIDIPSANTIIMDRADHLGLAQ----MHQLRGRVGRSHHQAYAYLLTPHPKRMTK 935



 Score = 38.5 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT---MA 186
            N + +D   F     +  + DQ  AI  + + +   R   +L+ G  G GKT      A
Sbjct: 594 FNINEEDYQRFAAGFPFEETIDQQTAIDAVKQDMQQPRAMDRLVCGDVGFGKTEVAMRAA 653

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            +     +  +V+ P  +LA Q Y  F + F   A+
Sbjct: 654 FIAVNEGKQVMVLVPTTLLAQQHYENFSDRFADQAI 689



 Score = 38.2 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 89/229 (38%), Gaps = 25/229 (10%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A  +G ++++ V T    ++  E+ ++   ++ IRV  +       + 
Sbjct: 644 GKTEVAMRAAFIAVNEGKQVMVLVPTTLLAQQHYENFSDRFADQAIRVEVLSRFKTAKQS 703

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             I+ DL  GK D+++G + LL++ +   + GL+ + +  + G    +   I+ +    R
Sbjct: 704 KGILEDLSNGKVDIVIGTHKLLQDNVKCHDLGLLIVDEEHRFGV--RQKDTIKRL----R 757

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK-----IMEVIDP 735
                + L A  I +++ +A++   R     +       +  ++   +     + E I  
Sbjct: 758 ADVDILTLTATPIPRTLNMAMN-NIRDLSI-IATPPAKRLAVKTFVREYDEPTVREAILR 815

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR-----KQMHLAADNLN 779
            +L       +  +   +  +    +A +   R      QM     +L 
Sbjct: 816 EILRGGQVYFLHNNVDTIEKTAADIEALVPEARVVVAHGQMRE--RDLE 862


>gi|299782816|gb|ADJ40814.1| Transcription-repair coupling factor [Lactobacillus fermentum CECT
           5716]
          Length = 1113

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/439 (14%), Positives = 152/439 (34%), Gaps = 37/439 (8%)

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             +   L ++   +V  +      +     +    + +++G  ++   + + L+   Y+R
Sbjct: 36  RPSIPFLADQAAVVVTDAAGLRRRLPKPGDFQAATLTVEVGGELDPTTVGTQLMAMGYQR 95

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
           Q + +  G F + G  ++I+ +       R+ +F  +++ +  F   + + + N+  + I
Sbjct: 96  QKMVLKPGDFAMRGSIVDIY-ALNTAHPVRIDLFDTEVDSLRYFDAESQRSVENIRAVTI 154

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
              + ++ P   L      +K EL+     L +     E Q L       +  L+     
Sbjct: 155 LPATDFIAPPAKLAQ----LKGELQDDYHHLAQTADEEERQALFGLFDPVISALDAGQLP 210

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +  Y+  +      E P +L +Y+P  S L +D+          +   +         
Sbjct: 211 VEMLEYADRVY-----EQPASLLDYLPAKSNLVLDDWGRIKEGAKRITEQETAWLMDKVA 265

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
              R+     +  +         P T +     G  +++  Q  I +   R         
Sbjct: 266 AKHRVRGATLDNGVMETLPKRPGPQTYLALFQKGLGQVKLAQ--ISDLATR--------- 314

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E++   +Q++ +  E+     QG  +++   +      +   L +  + V     +    
Sbjct: 315 EMQRFFSQLDLLKGELKRWQSQGATVVIMANSPERRNQVATTLADFGVAVVQTAPD---- 370

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG--- 676
                    +L +  V +    L  G ++P   LV I +A+    ++++    Q +    
Sbjct: 371 ---------QLMEHQVQLVAATLANGFEMPPANLVVITEAEMFKQVKNRRPRAQKLANAE 421

Query: 677 RAARNVNSKVILYADTITK 695
           R     + K   Y   +  
Sbjct: 422 RIKSYTDLKPGDYVVHVNH 440



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 14/188 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L      + +  +    PTG       +      V  + D I    Q+
Sbjct: 703 VLTLTATPIPRTLHMSMMGVRDLSVLETPPTGRYPIQTYVLEQNGAV--IRDGILREMQR 760

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E +   L E     R  Y+H ++   E   ++ D   G++DVLV  
Sbjct: 761 GGQVYYLHNRVHDIERVVAQLAELVPEARIGYIHGQMSENELEGVLYDFIRGEYDVLVTT 820

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +++  G+DI     + + DAD+ G  +    L Q  GR  R+     + YA  + +  ++
Sbjct: 821 SIIETGVDIANVNTLFVEDADRLGLAQ----LYQIRGRIGRSNR---VAYAYFMYQENKV 873

Query: 700 AIDETTRR 707
             ++  +R
Sbjct: 874 LTEQGEKR 881


>gi|297559048|ref|YP_003678022.1| transcription-repair coupling factor [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843496|gb|ADH65516.1| transcription-repair coupling factor [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 1201

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 78/538 (14%), Positives = 168/538 (31%), Gaps = 59/538 (10%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ----RPAIVMAPNKILAAQLY 210
            A+   ++         L L    + + F +  +         RP + +   +  A+ L 
Sbjct: 14  PALHSAIEAARGGRDPHLDLVAPAALRPFMVGALAADAPVGAQRPVLAVTATEREASDLA 73

Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270
                  P ++V  F ++ +    E   PR+DT  ++ +     + R+ H      L   
Sbjct: 74  DALGCLLPEDSVALFPAW-ETLPHERLSPRSDTVGQRLAV----LRRLAHPDPSDPLTTP 128

Query: 271 DCIVVSSVSCIY-----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
             +VV+ V  +      G+G +E        ++ GD V  +E++ +L    Y R D+   
Sbjct: 129 LRVVVAPVRSVLQPLVSGLGDLEPVR-----IRPGDEVPLEEVVQALANTGYARVDLVEK 183

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           RG   V G  +++FP   E+   R+  +G+ +E++  F     + I +            
Sbjct: 184 RGDMAVRGGILDVFPP-TEEHPLRLEFWGDTVEDVRYFQVADQRSIES-----------G 231

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
               P  + +        +  L+     GR          +   L  +    + + +E +
Sbjct: 232 GGDDPRTSASSGLFAPPCRELLLTDTVRGRARALAEEHPSLAEILHKIADGVAVEGMEAF 291

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505
           +  L  R           ++PE +++   +      +I           A   +  +   
Sbjct: 292 APVLAERMEP-----FLAHLPEGAMVVGCDP----ERIRTRAVELEATSAEFLDASWINA 342

Query: 506 SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI---- 561
           +     P+  +       +   + +T     L            +     +    +    
Sbjct: 343 ASGGEAPI--DLGESAYMSISELRSTAAELGLPWWGLTPFAADEQGGAAEEDDAVVVGAV 400

Query: 562 --RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
              S R   E    +I         ++L       AE L   L +  +    + +++   
Sbjct: 401 PSESYRGDTERALADIKGWLHDNWSVVLVTQGHGPAERLVAMLRDAGLGAS-LSADLTE- 458

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
                    R       V   L+  G  +     V + + D  G   S   + +   R
Sbjct: 459 ---------RPKPAVATVTTGLVDHGFLLRSVRTVVLTETDLAGQKSSTRDMRRMPSR 507



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 13/160 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV----- 568
           E    LR     + +SATP    LE     I E     T ++ PP E     T V     
Sbjct: 784 EALKRLRTQVDVLAMSATPIPRTLEMGLTGIREM----TTILTPPEERHPVLTFVGPYED 839

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIR 626
           + +   I     +  ++          + +   +       R  Y H ++   +  +++ 
Sbjct: 840 KQITAAIRRELMREGQVFFVHNRVASIDKVAASIQRLVPEARVAYAHGQMNEQQLEKVMV 899

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           D     FDVLV   ++  GLD+P    + I  AD  G  +
Sbjct: 900 DFWEKNFDVLVSTTIVESGLDVPNANTLIIDRADTYGLSQ 939


>gi|319787478|ref|YP_004146953.1| transcription-repair coupling factor [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465990|gb|ADV27722.1| transcription-repair coupling factor [Pseudoxanthomonas suwonensis
           11-1]
          Length = 1166

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 101/294 (34%), Gaps = 31/294 (10%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            + S   + + +   A   P + +A +   A Q+ ++ +     ++            P 
Sbjct: 28  ASPSALAWHLVRAARAHPGPLLFVARDTQSAHQVEADLQTLLGSDSDL----------PV 77

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMI 294
              P  +T      S +  I   R +A + L      IVV  V   +  +  +   +   
Sbjct: 78  VPFPDWETLPYDRFSPHPDIISQRLAALQRLPRLERGIVVVPVQTLLQRLPPLRYIAGTS 137

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             L  G  ++       L    Y+     +  G F V G  ++++P   +    R+ +  
Sbjct: 138 FDLATGQRLDLDAEKRRLESAGYRNVPQVLDPGDFAVRGGLLDVYPMGAQ-APLRIELLD 196

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P + + +  +E + +           +L   M      L+ R        
Sbjct: 197 DEIDSIRSFDPESQRSLDRIEAVHMLPGRETPMDEASLGRVMDA----LRERFD------ 246

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL--TGRNPGEPPPTLFEYIP 466
                  ++ R +   + L+   +   IE Y       GR+      TLF+Y+P
Sbjct: 247 -------VDTRRSALYQDLKAGIAPAGIEYYLPLFFPPGRDGSGSTATLFDYLP 293



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 14/195 (7%)

Query: 524 TTIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSAR-TQVEDVYDEINLAA 579
             + ++ATP    L     G+    II   P   +     +      Q+ + +       
Sbjct: 769 HLLTLTATPIPRTLNMAMAGLRDLSIIATPPPNRLAVQTFVVPWDDNQLREAFQRELSRG 828

Query: 580 QQGLRILLTVLT-KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q   +   V +  RM + L E + E  I V   H ++   E   ++ D +  +F+VL+ 
Sbjct: 829 GQLYFLHNDVESMGRMQKQLAELVPEARIGVA--HGQMPERELERVMLDFQKQRFNVLLA 886

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +     YA  +    +
Sbjct: 887 STIIESGIDIPNANTIVINRADKFGLAQ----LHQLRGRVGRSHHR---AYAYLLVPPDR 939

Query: 699 LAIDETTRRREKQLE 713
            A+     +R   + 
Sbjct: 940 RAMSPDAEKRLDAIA 954


>gi|110833889|ref|YP_692748.1| transcription-repair coupling factor [Alcanivorax borkumensis SK2]
 gi|110647000|emb|CAL16476.1| transcription-repair coupling factor [Alcanivorax borkumensis SK2]
          Length = 1159

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/338 (18%), Positives = 112/338 (33%), Gaps = 43/338 (12%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
           + RE  +   G+        +A++  +     +V+APN   A QL      +   +    
Sbjct: 12  NGREHYKDWAGLNAGSMAAVLAELARSQNHLLVVLAPNSSRAQQLTDSLSFYLTGSN--- 68

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL-LERNDCIVVSSVSCIYG 283
                    P    P  +T      S ++ I   R      L       +VV   + +  
Sbjct: 69  --------TPVMLFPDWETLPYDLFSPHQDIISDRIQVLHQLPTTHKGILVVPVNTLMQR 120

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +      +     LK+GD  + +   S LV   Y+++D     G F V G  ++IFP   
Sbjct: 121 LAPPIHITGNSFLLKVGDRFDMEATRSRLVASGYRQRDNVYEHGEFAVRGAIMDIFPMGA 180

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+ +F ++IE +  F   + +    V+ I +   + +      +           
Sbjct: 181 E-QPFRIELFDDEIESLRLFEAESQRSTGKVDNITLLPAAEFPLSAEGIARF-------- 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
             R    +          L Q +T          +   +E Y          E   TLF+
Sbjct: 232 --RSRFRDTFDVDTRHVPLYQDVT-------DGLAAPGLEYYLPLFY-----EEMATLFD 277

Query: 464 YIPEDSLLFVDESHVT--------IPQISGMYRGDFHR 493
           Y+P+D  L       +        + Q     R D HR
Sbjct: 278 YLPDDVRLVELADTQSAIKHFWQDVEQRHESRRHDIHR 315



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 67/186 (36%), Gaps = 10/186 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T      + +++   Q  D  + + +     +G
Sbjct: 757 ILTLTATPIPRTLNMAMSGMRDISIIAT-PPQKRLSVKTFVQQHNDTVIKEALLRELLRG 815

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E     + +     R    H +++  E   ++ D    +F+VLV   
Sbjct: 816 GQVYYLHNDIDTMEKTAADIRKLVPDARVGIAHGQMRERELEAVMSDFYHRRFNVLVSTT 875

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL- 699
           ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K +   
Sbjct: 876 IIETGIDVPSANTIIIDRADKLGLAQ----LHQLRGRVGRSHHQAYAYLITPSPKVMTKD 931

Query: 700 AIDETT 705
           AI    
Sbjct: 932 AIKRLE 937



 Score = 44.3 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 33/233 (14%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A +   ++ + V T    ++  E  T+   +  + +  +       E+
Sbjct: 639 GKTEVAMRAAFVAVENQTQVAVLVPTTLLAQQHYESFTDRFADWPVNIEVLSRFRSAKEK 698

Query: 622 IEIIRDLRLGKFDVLVGI-NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            ++++ L+ GK D+LVG   LL+E +     GL+ + +  + G +R K  L Q      R
Sbjct: 699 TQVLQRLKEGKVDILVGTHQLLQETVSFDNLGLIIVDEEHRFG-VRHKERLKQM-----R 752

Query: 681 NVNSKVILYADTITKSIQLA---------IDETTRRREKQLEHNKKHNINPQSVKEKIME 731
                + L A  I +++ +A         I    ++R       ++HN         I E
Sbjct: 753 AECDILTLTATPIPRTLNMAMSGMRDISIIATPPQKRLSVKTFVQQHNDT------VIKE 806

Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR-----KQMHLAADNLN 779
            +   LL       +  D   +  +    +  +   R      QM      L 
Sbjct: 807 ALLRELLRGGQVYYLHNDIDTMEKTAADIRKLVPDARVGIAHGQMRE--RELE 857



 Score = 42.4 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 52/155 (33%), Gaps = 4/155 (2%)

Query: 72  TASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSI 131
             S     S+     +    R  +EQ      +A  ++      LL              
Sbjct: 530 PVSSLHLISRYGGGDTAPLNRLGTEQWTKARQKAAEKIHDVAAELLNTYARREAREGRQF 589

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAK 187
                D   F     +  + DQ AAIA ++  + S +   +L+ G  G GKT      A 
Sbjct: 590 ELDLNDYDRFSASFPFEETPDQQAAIASVVADMQSSQPMDRLVCGDVGFGKTEVAMRAAF 649

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           V    Q    V+ P  +LA Q Y  F + F    V
Sbjct: 650 VAVENQTQVAVLVPTTLLAQQHYESFTDRFADWPV 684


>gi|258593268|emb|CBE69607.1| Transcription-repair-coupling factor (TRCF) (ATP-dependent helicase
           mfd) [NC10 bacterium 'Dutch sediment']
          Length = 1152

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/523 (16%), Positives = 167/523 (31%), Gaps = 101/523 (19%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I +++  + S      L G+ G+ K   ++++     RP +V+  +   A  L  + + F
Sbjct: 12  IGEIVDRLDSGADALYLTGLFGASKALILSQIARRSGRPLVVVTSSSAEAELLAKDLQVF 71

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVV 275
           F                            E++   + +    R +    L  +N    VV
Sbjct: 72  FRD--------------------SVGVMAERDE--DPETGYQRITCLTGLATKNCDLAVV 109

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
              + +  +    +       L +G  + + EL+  L    Y+R      RG + + G+ 
Sbjct: 110 CLQAALERLAPPSAILGAAFTLYVGRLIARDELVGVLETGGYRRVHQTTDRGEYSLRGNL 169

Query: 336 IEIFPSHLE---------------DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +++FP                   D   R   FG++I E+  F P T + I +VE + + 
Sbjct: 170 LDLFPLTPSLNGSTGLTTGRVEPPDCPVRAEFFGDEILELRAFDPATQRSIGSVEQVTVL 229

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
                         A++ ++      + +        E           +  LE      
Sbjct: 230 PVVEAPLTGEVCRRALEVLRA-----MKKTRDSSVPSEI----------ITALEDRRQVL 274

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            ++ Y  Y         P  L +Y+  D+L  + +     P        D     +L ++
Sbjct: 275 GLDTYLPYFYP-----EPADLLQYVAPDALWVLID-----PTGLRAAARDVAPSTSLVDW 324

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
                       +  EE+  L   ++   AT G               +R          
Sbjct: 325 SDVEQRLSLRPRIYMEEF--LPTNSLAEEATLGFQ-------------VR---------T 360

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I + R ++ ++  ++    +QG +I L   ++     L E L E ++             
Sbjct: 361 IPAYRGRMTELIRDLQEWRRQGRKIHLVCRSEAQGGRLAEVLREHDVAASVGLGVAS--- 417

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                     G+  VL   + L  G  + E  L  I +A+  G
Sbjct: 418 ---------PGEIAVL--SHELSSGFHLDEALLTYITEAEIFG 449



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 71/200 (35%), Gaps = 17/200 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--V 571
           E    LR     + ++ATP    L     + V  I       D  + I++   + +   +
Sbjct: 735 ERMKQLRRQVDVLTLTATPIPRTLHMS-MLGVRDISTIETAPDNRLSIKTTVARFDPALI 793

Query: 572 YDEINLAAQQGLRILLT---VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            + I     +G ++      V + +    L + L          H E+       I+ D 
Sbjct: 794 KEAIEHELDRGGQVFFVHNRVESIQGVARLIKQLVPEARLAVA-HGELPEERLERIMCDF 852

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G F+VL+   ++  GLD+     + I  AD  G  +    L Q  GR  R+ +     
Sbjct: 853 YDGTFNVLLCTTIIESGLDVSAANTIIIDRADALGLAQ----LYQLRGRVGRDKHRAYAY 908

Query: 689 YADTITKSIQLAIDETTRRR 708
                      A+ ET ++R
Sbjct: 909 LLVPKD----AALSETAKKR 924



 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 14/139 (10%)

Query: 85  SMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQ 144
           S S  + +E  + ++    Q L  L  S   +   G    P   W           F+  
Sbjct: 542 SASWAKAKERVKASVREMAQELLALYASRQVI--KGHALPPDTPWQRE--------FEAG 591

Query: 145 TDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMA 200
             Y  + DQ  AIA +   +   R   +L+ G  G GKT   M    + +   +   V+ 
Sbjct: 592 FPYEETPDQLQAIADVKADMERDRPMDRLICGDVGYGKTEVAMRAAFKTIIGGKQVAVLV 651

Query: 201 PNKILAAQLYSEFKNFFPH 219
           P  +LA Q +  F   F  
Sbjct: 652 PTTVLALQHFQTFSERFGG 670


>gi|119478459|ref|ZP_01618444.1| transcription-repair coupling protein Mfd [marine gamma
           proteobacterium HTCC2143]
 gi|119448545|gb|EAW29792.1| transcription-repair coupling protein Mfd [marine gamma
           proteobacterium HTCC2143]
          Length = 1152

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/513 (14%), Positives = 162/513 (31%), Gaps = 67/513 (13%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           GS  +  M+      Q+  +++  +   A +   E K +  +  + +F            
Sbjct: 26  GSAASLAMSTAAANTQQLTVLVCNDTASALRFEQELKFYGENLEILHF------------ 73

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMIVQ 296
            P  +T      S ++ I   R +    L +    I+V  +S +   +   +      + 
Sbjct: 74  -PDWETLPYDNFSPHQDIVSERLTTLYRLSQVQQGILVVPISTLMHQLLPRDYLQAHSLV 132

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           +KIG      E+   L    Y+        G F + G  ++IFP     + +R+ +  ++
Sbjct: 133 IKIGQRFSINEMRRKLESNGYRCVTTVFEHGEFALRGSIMDIFPM-GSKLPFRIDLLDDE 191

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           I+ +  F P + + +  V+ + +     +      +                      R 
Sbjct: 192 IDTLRTFDPESQRTVEQVKAVNLLPAKEFPLDEEGIRRF-----------------RNRW 234

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
            E   ++ R     + +    +   IE Y          +   TLF+++P++ L+   E 
Sbjct: 235 HEYFDVDHRQCPTYQDVSNGIAPAGIEYYLPLFF-----DHTNTLFDFLPDNCLMITTEG 289

Query: 477 HVTIPQISGMYRGDFHRKATL-AEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
                     +R    R      +    L           + +  ++    +++      
Sbjct: 290 --LEGAADQFWRDLHSRYEDRNIDVQRPLLPPHHLFIPSEKLFAAIKKYPRIITHHENIE 347

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
             +       +Q   P  L           ++VE + +      +   R+L    +    
Sbjct: 348 VRQGSSNFACKQ---PQFLSIDSKAANP-LSEVERLIE------ETSGRVLFCAESAGRR 397

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E L + LY   I    + S           +        V + I  L  GL++    L  
Sbjct: 398 ETLIDLLYRHGISATTVDS----------WQLFLDSSASVAITIGPLESGLNLD--TLTV 445

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           I +    G       ++QT  R     NS+ I+
Sbjct: 446 IAEPQLFG-----QRVMQTRRRRKSKDNSEAII 473



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 67/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R +      + + I     +
Sbjct: 753 ILTLTATPIPRTLNMAISGMRDLSIIATPPARRLSVKTFVRQSDN--ATIKEAILREILR 810

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++       +  E  +  L      VR    H ++   +  +++ D    +F++L+  
Sbjct: 811 GGQVYYLHNEVKTIEQTSRELQALVPEVRIGIGHGQMPERQLEQVMSDFYHKRFNLLLCT 870

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K++
Sbjct: 871 TIIETGIDVPSANTILINRADKFGLAQ----LHQLRGRVGRSHHQAYAYMLTPDAKNM 924



 Score = 38.9 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSR-EKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            +  + DQ +AI  ++  + S     +L+ G  G GKT      A +     +   ++ P
Sbjct: 600 PFEETPDQESAIKAVVADLQSDAATDRLVCGDVGFGKTEVAMRAAFIAVHNSKQVAILVP 659

Query: 202 NKILAAQLYSEFKNFFPHNAV 222
             +LA Q +  FK+ F    V
Sbjct: 660 TTLLAQQHFESFKDRFADWPV 680


>gi|254819273|ref|ZP_05224274.1| hypothetical protein MintA_05066 [Mycobacterium intracellulare ATCC
           13950]
          Length = 1200

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 96/516 (18%), Positives = 175/516 (33%), Gaps = 59/516 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             QL+    +      L+G   S +   +A  +  +  P +V+      A  L +E +  
Sbjct: 8   FQQLIDSAAASPAELHLVGPA-SAR-LFVASALARLG-PLLVVTATGREADDLTAELRGV 64

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           F   AV  F S+ +    E   P  DT   + +     + R+ H     L      +V +
Sbjct: 65  FGD-AVAVFPSW-ETLPHERLSPGVDTVGARLTV----LRRLAHPDDARLGPPLQVVVTA 118

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + S +  + + +      V L +G  VE + +++ LV+  Y R D+   RG F V G  +
Sbjct: 119 ARSLLQPM-TPQLGLIEPVTLSVGAEVEFEGVIARLVELAYTRVDMVGRRGEFAVRGGIL 177

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR--NVETIKIYANSHYVTPRPTLNT 394
           ++FP   E    R+  +G+++ E+  F     + I    V+T+        +        
Sbjct: 178 DVFPPTAE-HPVRIEFWGDEVSEMRMFSVADQRSIPEIEVDTLIAVPCRELLLTEEVRQR 236

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A      EL  R               +   +T  L  L    +   +E     L    P
Sbjct: 237 A-----AELSAR--------HPATEPAITGSVTDMLAKLAEGIAVDGMEALLPVL---RP 280

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
           GE    L + + + + + + +      +I           +   E  +   +   + P+ 
Sbjct: 281 GEH-VLLTDQLAQGTPILLCDP----EKIRTRAADLIKTGSEFLEASWSAAAMGTDAPVD 335

Query: 515 FEEWNCLRPTTI-VVSATPGS-----WELEQ-CQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
             ++       +  V A         W L Q      VE  IR           R  +  
Sbjct: 336 VAQFGGSGFAELDDVQAAAAKGGHPWWTLSQLSDESAVELDIRAAPSA------RGHQHD 389

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           ++ ++  +      G   ++       A  + E L E +     + S             
Sbjct: 390 IDGIFAMLRAHVTTGGYAVVVAPGAGTAHRVVERLAECDTPAAMLESGAAP--------- 440

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            +LG   VL G   L +G+ IP   LV I + D  G
Sbjct: 441 -KLGVVGVLKGP--LHDGVIIPGATLVVITETDLTG 473



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E     T V   +D      L  + 
Sbjct: 779 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGPHDDKQVAAALRREL 834

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +     + E     R +  H ++        ++     ++D+LV
Sbjct: 835 LRDGQVFYVHNRVSSIDRTAAKIRELVPEARVVVAHGQMPEERLERTVQGFWNREYDILV 894

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +        
Sbjct: 895 CTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPPHAP- 949

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N +  
Sbjct: 950 ---LTETAYDRLATIAQNNELG 968


>gi|192358851|ref|YP_001982241.1| transcription-repair coupling protein Mfd [Cellvibrio japonicus
           Ueda107]
 gi|190685016|gb|ACE82694.1| transcription-repair coupling protein Mfd [Cellvibrio japonicus
           Ueda107]
          Length = 1184

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 86/493 (17%), Positives = 162/493 (32%), Gaps = 63/493 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS +   +          ++V+AP+   A +L +E            F +  D   P 
Sbjct: 55  LHGSAQALAIVNAARNYAGLSLVIAPDTSSAIRLQTELS----------FFTGGDEQLPV 104

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSL-LERNDCIVVSSVSCIYGIGSVESYSQMI 294
            ++   +T      S ++ I   R      L   R   +VV   + +  +          
Sbjct: 105 LHLADWETLPYDSISPHQDIISERLRTLYRLPTTRRGILVVPITTLLQRLMPRSYLLGNS 164

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G+ ++  +L  +L +  Y   D     G F V G  ++IFP    D+ +R+ +F 
Sbjct: 165 LMLAVGEQLDIDQLRHNLERAGYHAVDTVYEHGEFAVRGALLDIFPM-GSDLPYRIDLFD 223

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           +++E +  F P T   I  VE I++     +   +P     +   K++   R        
Sbjct: 224 DEVETLRTFDPETQMTIDKVEKIQLLPAKEFPLNKP----GINLFKQQWLERFD------ 273

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  +  +     + +    S   +E Y          +    LF+Y+P+++L++  
Sbjct: 274 -------VNHKECPVFQDISAGISPPGVEYYLPLFF-----DSCSNLFDYLPQNTLVYAL 321

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFR--LPSCMDNRPLRFEEWNCLRPTTIVVSAT- 531
            +          +     R  +      R  LP         +   + L       S T 
Sbjct: 322 GN--FEKSAENFWLELLRRYESRRVDPLRPLLP-----PKDIYLSIDELYTQLKPYSRTF 374

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN-LAAQQGLRILLTVL 590
             +  LE+  G       +P  L          R Q E     I     +   R+L    
Sbjct: 375 ISNDILEERAGHYNFASCQPPNL--------PIRAQAEQPLAAIEAFLMEYHGRVLFCAE 426

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           +    E L E L    +R              E  +     K  + + I  L +GL   +
Sbjct: 427 SAGRRETLLELLGRIRVR----------PAPAESWQAFLSSKESIAITIAPLEQGLQQQQ 476

Query: 651 CGLVAILDADKEG 663
              V I ++   G
Sbjct: 477 PDTVLIAESQLFG 489



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 90/259 (34%), Gaps = 15/259 (5%)

Query: 525  TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
             + ++ATP    L     GI    II   P   +     +R+    V  + + I     +
Sbjct: 789  ILTLTATPIPRTLNMSMAGIRDLSIIATPPARRLSVKTFVRTYDEAV--IKEAILREILR 846

Query: 582  GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G ++          E +   L E     R    H +++  +   ++ D    +F+++V  
Sbjct: 847  GGQVYYLHNEVDTIEKVARELQELIPEARIAVGHGQMRERDLERVMSDFYHKRFNIMVCT 906

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +           +++  
Sbjct: 907  TIIETGIDIPSANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPERRAMT- 961

Query: 700  AIDETTRRRE-KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
              D+  +R E      +        +   +I    + +  E +        +  + +  +
Sbjct: 962  --DDAVKRLEAISAAEDLGAGFTLATYDMEIRGAGELLGEEQSGQIQTIGFSLYMEMLDR 1019

Query: 759  KGKAHLKSLRKQMHLAADN 777
              KA  +  +  +  A   
Sbjct: 1020 AVKAIRQGKQADIEQALKE 1038



 Score = 45.9 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 4/129 (3%)

Query: 95  SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQP 154
           SE       +A  ++  +   LL+        + ++  +       F     +  + DQ 
Sbjct: 585 SESWQKAKRKAAEQIRDTAAELLEVYARRAARKGFAFPDPQTAYAAFSASFPFEETPDQQ 644

Query: 155 AAIAQLLKG-IHSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLY 210
            AI  ++K  +  +   +L+ G  G GKT      A V     +   ++AP  +LA Q Y
Sbjct: 645 RAIEAVVKDMLSPKPMDRLVCGDVGFGKTEVAMRAAFVASHAGKQVAILAPTTLLAQQHY 704

Query: 211 SEFKNFFPH 219
              K+ F  
Sbjct: 705 ESLKDRFAE 713


>gi|94971575|ref|YP_593623.1| transcription-repair coupling factor [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553625|gb|ABF43549.1| transcription-repair coupling factor [Candidatus Koribacter
           versatilis Ellin345]
          Length = 1182

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 90/540 (16%), Positives = 181/540 (33%), Gaps = 59/540 (10%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           + S      + G+T S +    A   +A  +P IV+ P+   A +L    + +       
Sbjct: 26  VKSGTGRIRVSGLTPSARALHYALFSKATLKPLIVVVPSNRAAEELLPIVQAYCE----- 80

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS-VSCIY 282
             ++   +      +P  D    +  S + +I   R +A   ++      V++  V+   
Sbjct: 81  --LTGTAHADAVVMLPAYDVLPYENLSPHPEIQEARAAALWKIVSGTARFVIAPFVATAM 138

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
                E Y  +   +  G+S++  EL + L    Y   D+  + G + + G  ++I+P  
Sbjct: 139 HYRPAEFYFDLTKVINRGNSIDSDELRAHLNTSGYSTVDVVEMPGEYALRGGILDIYPPE 198

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E    R+ +FG+++E I +F   T +     + + +   S            +  I  +
Sbjct: 199 SE-HPVRIELFGDEVESIRKFDTETQRSAGATDEVVLLPLSDTPVRED----ILGSIHAK 253

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS--RYLTGRNPGEPPPT 460
           L  R                  R+  D E LE     + +  +    Y  G    +    
Sbjct: 254 LSGR------------------RLDADEETLEAIARAEGVTVFPGWEYYAGATANQR--- 292

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           LF+ +P  ++L  D   +     +   R     + +   +  R    +D+     + W  
Sbjct: 293 LFDLLPNAAVLRDDPVKIESDFEAWWERVQQSHERSGVGHLVRPEDLLDSP----DTWQQ 348

Query: 521 LRPTTIVVSATPGSW-ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
                   ++ PG+  E         EQI   +               V  + +E+    
Sbjct: 349 RI------ASLPGADVEQLGMYSESGEQIAIQSQSTSK------FHGSVPAMVEEVKALL 396

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD---LRLGKFDVL 636
             G R+L         E L +   E  +  R + S      +   I +            
Sbjct: 397 TDGRRVLFAAANTGEVERLADIFSEYMVPFR-VGSRSTRPGQETYIEEQGFFAEDLSATT 455

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V    + EG+ +PE   V      ++ F  S+ +  Q   R+   V++ +  + D     
Sbjct: 456 VVKAYVPEGVAMPESRFVLF--GTRDLFDESEVASAQQPKRSRSKVSAFLSDFRDLTIND 513



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 70/188 (37%), Gaps = 13/188 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + +SATP    L      + +  +  T   D    I++   + ++  +   I     +G
Sbjct: 784 VLTMSATPIPRTLHMSLLGLRDMSVIETPPKDRMA-IQTVVAKWDEKLIKSAIEQELDRG 842

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            +I           ++++ ++E   + + +  H ++   +  +I+        D+LV   
Sbjct: 843 GQIYFVHNRVESIYEISDKIHELVPKAKILVGHGQMGEGQLEDIMLKFMRHDADILVATT 902

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  GLDIP C  + +  AD+ G       L Q  GR  R+                   
Sbjct: 903 IIENGLDIPLCNTMIVNRADRHGLSE----LYQLRGRVGRSNRRAYAYLLVPPD----RE 954

Query: 701 IDETTRRR 708
           + E  RRR
Sbjct: 955 LTELARRR 962


>gi|163793172|ref|ZP_02187148.1| Transcription-repair coupling factor [alpha proteobacterium BAL199]
 gi|159181818|gb|EDP66330.1| Transcription-repair coupling factor [alpha proteobacterium BAL199]
          Length = 1162

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 84/496 (16%), Positives = 162/496 (32%), Gaps = 68/496 (13%)

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
            F +A++     R  + +A +    A L        P   V               +P  
Sbjct: 29  AFVVARLAGERGR-VLHVARDDARLAALVRAIAFVDPSLRVLT-------------LPAW 74

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLER-----NDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           D       S N +I   R      L           ++ +  + +  +   + +    + 
Sbjct: 75  DCLPYDRVSPNGEIVSRRVETLAELASTASETTPLVVLTTVNAVLQRLPPRQFFDGASLT 134

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK+GD +  + LL+   +  Y R D     G F V G  I++FP+ +++ A R+  FG++
Sbjct: 135 LKVGDDMPLESLLAMFTRSGYGRTDTVREPGEFAVRGGIIDVFPTGMDEPA-RLDFFGDE 193

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           +E +  F  ++ +    ++ +        +     +             R     + G  
Sbjct: 194 LEAVRTFDAMSQRTSGTLDRVVFRPVGETLLDEAAIQRF----------RSGYRAQFGAE 243

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE- 475
           + A  +        E +        +E++      R       T+ +Y+  D+ + +D  
Sbjct: 244 IAADPV-------YEAVSAGRRHGGMEHWLPLFHERME-----TVLDYLG-DTCVILDHQ 290

Query: 476 ----SHVTIPQISGMYRGDFH--RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
               ++    QI+  Y       R       G   P   D+  L  +EW  +     V +
Sbjct: 291 VDEVANARFEQIAEYYDARRQMVRTGGSESGGIYRPLPSDSLYLTGDEWRAILADRPVGA 350

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILL 587
            TP         G  V       G+    VE R+       +   D I      G R+++
Sbjct: 351 LTP----FAAPPGDAVLDFDASGGI--DLVEARTQGGSAVYDAALDAIAHEVTAGRRVVV 404

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
              T+   + LT  L +  +        ++ ++ +  +  L  G     V    L  G  
Sbjct: 405 AGYTEGSRDRLTSLLRDHGLDR------IEPVDSLAEVHALPAGTVAATVLP--LERGWR 456

Query: 648 IPECGLVAILDADKEG 663
               GL  I + D  G
Sbjct: 457 --HGGLTLIAEPDIVG 470


>gi|313835372|gb|EFS73086.1| transcription-repair coupling factor [Propionibacterium acnes
           HL037PA2]
 gi|314972378|gb|EFT16475.1| transcription-repair coupling factor [Propionibacterium acnes
           HL037PA3]
 gi|328908370|gb|EGG28129.1| transcription-repair coupling factor [Propionibacterium sp. P08]
          Length = 1194

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 89/474 (18%), Positives = 162/474 (34%), Gaps = 72/474 (15%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR----PAIVMAPNKILAAQLYSEFKNF 216
           ++   +R    L L VT S +   +A +  ++      P +++      A +  +  + +
Sbjct: 21  VEDALTRRTPTLDLQVTASARPAVVAVLSRSLDGSRRLPVLLVTSTFREAEESVATLETW 80

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              +AV Y+ S+ +    E   PRTDT   +   +       R   T         +VV+
Sbjct: 81  LGGDAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLR------RLCGTEG---EVPQVVVA 130

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
            V  +             V L +G+  +  EL + L+   Y R D+   RG F V G  +
Sbjct: 131 PVRSLLQPQVAGLGRIKPVHLAVGEEHDLTELATELINAAYSRVDMVERRGEFAVRGGIV 190

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY-ANSHYVTPRPTLNTA 395
           ++FP  LE    R+  FG+ IEE++ F     +         I       +      + A
Sbjct: 191 DVFPPVLE-HPVRIDFFGDKIEEMTSFAVADQRSTDETHEELICAPCRELILTDNVRSRA 249

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
                   K  L +  +   +LE              +    + + +E     L      
Sbjct: 250 --------KALLPDHPELADMLER-------------IGDGQAVEGMEALMPALVDEMEL 288

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA--------------TLAEYG 501
                L + +PE +++ + +  +   + + + R                      LA  G
Sbjct: 289 -----LVDVLPEHAMIVLSDPEMVRSRAADLVRTSEEFLGAGWAAAAGGGQAPIDLAASG 343

Query: 502 FRLPSCMDNRPLRFEE---WNCLRPTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVD 556
           +R  S    R    E    W  +   T+  SAT   G+ E          Q + P     
Sbjct: 344 YR--SLTRVRSHCLERGMAWWSMSSFTLDASATDVLGADEPATS----APQTVNPQ---- 393

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
             V +   R  VE    ++      G  ++L    +  A+ +TE L E ++  R
Sbjct: 394 -LVAVEPWRGDVEAAVKDLTTRLDDGWTVVLCAEGEGTAKRMTELLGEHHVAAR 446



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 65/205 (31%), Gaps = 25/205 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--------RTQVEDVYDEIN 576
            + +SATP    LE     I E     T    PP E              QV      I 
Sbjct: 791 VLAMSATPIPRTLEMAVTGIREMSTIAT----PPEERHPVLTFAGPYDEGQV---VAAIR 843

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
               +  ++       +  E     L E     R +  H ++   +   I+ D    + D
Sbjct: 844 RELAREGQVFYIHNRVQSIEKTAVKLRELVPEARIVTAHGQMNEKQLERIMVDFWERRAD 903

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV   ++  G+DIP    + I  AD  G  +    L Q  GR  R+       +     
Sbjct: 904 VLVCTTIVESGIDIPTANTLLIDRADLMGLSQ----LHQLRGRVGRSRARGYAYFLYPAD 959

Query: 695 KSIQLAIDETTRRREKQLEHNKKHN 719
           K     + +T   R   +  +    
Sbjct: 960 KP----LSQTAHDRLATMAAHTDLG 980


>gi|302519736|ref|ZP_07272078.1| transcription-repair coupling factor [Streptomyces sp. SPB78]
 gi|302428631|gb|EFL00447.1| transcription-repair coupling factor [Streptomyces sp. SPB78]
          Length = 1178

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 115/287 (40%), Gaps = 19/287 (6%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+A+ +K      + Q  +    + + F +A +    +R  + +      A  L +  +
Sbjct: 14  PALAEAVKAAGDGHRTQADVVGPPAARPFVVAALAREARRTVLAVTATGREAEDLAAALR 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
              P   V  F S+ +    E   PR+DT   + +     + R+ H            +V
Sbjct: 74  TLIPAEGVVEFPSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPEADDPEAGPVSVV 128

Query: 275 VSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           V+ +  +      G+G +E  +     L+ G SV+ +E++ +L    Y R ++   RG F
Sbjct: 129 VAPIRSVLQPQVKGLGDLEPVA-----LRQGQSVDLQEIVEALAAAAYARVELVEKRGEF 183

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTP 388
            V G  +++FP   E+   RV  +G+++EE+  F     + +   E  +        +  
Sbjct: 184 AVRGGILDVFPP-TEEHPLRVEFWGDEVEEVRYFKVADQRSLEIAEHGLWAPPCRELLLT 242

Query: 389 RPTLNTAMKYIKE--ELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
                 A    +E  EL   L ++ +   +   + L   +  D+E+L
Sbjct: 243 DKVRRRAAVLAEEHPELHELLGKIAEGIAVEGMESLAPVLVDDMELL 289


>gi|108801209|ref|YP_641406.1| transcription-repair coupling factor [Mycobacterium sp. MCS]
 gi|119870360|ref|YP_940312.1| transcription-repair coupling factor [Mycobacterium sp. KMS]
 gi|108771628|gb|ABG10350.1| transcription-repair coupling factor [Mycobacterium sp. MCS]
 gi|119696449|gb|ABL93522.1| transcription-repair coupling factor [Mycobacterium sp. KMS]
          Length = 1211

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 89/519 (17%), Positives = 166/519 (31%), Gaps = 65/519 (12%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +A L      +     ++G   S +    A + +A   P +V+      A  L +E +  
Sbjct: 26  LADLSARAADKPDDLAMVGPA-SARLLVTAALAQA--GPLLVVTATGREADDLTAELRGV 82

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              +A   F S+ +    E   P  DT   +       + R+ H     L      +VV+
Sbjct: 83  IGDSA-ALFPSW-ETLPHERLSPGVDTVGARMM----LLRRLAHPDDARL-GPPLRVVVT 135

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           +   +    +        V L +G  ++   ++  LV   Y R D+   RG F V G  +
Sbjct: 136 TARSLVQPMAPGLAEVEPVTLTVGAEMDFDGVIKRLVDLAYTRCDMVAKRGEFAVRGGIL 195

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR--NVETIKIYANSHYVTPRPTLNT 394
           ++FP   E    RV  +G++I E+  F     + I    V+T+        +      + 
Sbjct: 196 DVFPPTAE-HPVRVEFWGDEISEMRMFAVADQRSIPEIEVDTVIAVPCRELLMSDEVRSR 254

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A              +           +   +   L  L        +E     L   + 
Sbjct: 255 A-------------AVLAAEHPTHENSVPGSVPDMLAKLAEGIPVDGMEALLPLLRPTDL 301

Query: 455 GEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYGFRLP-SCMDN 510
                 L +++P+ + + V +          +    R       + A  G   P      
Sbjct: 302 ----AMLSDHLPDGAPILVCDPEKVRTRAGDLIKTGREFLEASWSTAAVGGAAPIDLEAM 357

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR---SARTQ 567
               F  +  +R                +  G     + + +      ++IR   SAR Q
Sbjct: 358 GASGFLGFEEVRT-------------GARAGGHPWWTLSQLSDEKAIELDIRSAPSARGQ 404

Query: 568 ---VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
              VE+++  +      G    +       A  + E L E +               +E 
Sbjct: 405 QSSVEEIFAMLRAHVATGGYGAVVTPGAGTAHRVVEQLGENDTPA----------TMLEP 454

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             + + G   VL G   L +G+ +P   LV + +AD  G
Sbjct: 455 GEEPKAGVVGVLKGP--LHDGVVLPGANLVIVTEADLTG 491



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 66/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E     T V   +D      L  + 
Sbjct: 793 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGPQDDKQVAAALRREL 848

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +        R  +     +       R +  H ++        +      ++D+LV
Sbjct: 849 LRDGQAFYIHNRVRTIDQAASKIAALVPEARVVVAHGQMPEELLERTVEGFWNREYDILV 908

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +     +  
Sbjct: 909 CTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPPEQP- 963

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N +  
Sbjct: 964 ---LTETAYDRLATIAQNNELG 982


>gi|324997533|ref|ZP_08118645.1| transcription-repair coupling factor [Pseudonocardia sp. P1]
          Length = 1211

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 86/479 (17%), Positives = 151/479 (31%), Gaps = 53/479 (11%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ---PEAYVPRTDTYIEKESSIN 252
            + +      A  L +   +   H       +   +     P   +P  +T   ++ S  
Sbjct: 59  VLAVTATDREAEDLAAAVSDLLGHGEALDAAADTVHDSAGAPVVVLPSWETLPHEKLSPR 118

Query: 253 EQIDRMRHSATRSLLERNDCI--VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
                 R +    L         VV++   +    +    +   V L +G+  E ++LL 
Sbjct: 119 PDTVARRLTIFHRLASPATAPRVVVTAARSLIQPVAPGLGALAPVSLAVGEEHEFEQLLE 178

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV+  Y R ++   RG F V G  +++FP   E    RV  +G+++ E+  F     + 
Sbjct: 179 RLVELAYTRAEMVTTRGEFAVRGGILDVFPPTAE-HPVRVEFWGDEVSEMRAFSVADQRS 237

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +  V  +++      +   P    A      EL     E     R          +   L
Sbjct: 238 VGEVGRVEVPPCRELLLTGPVRQRA-----AELAAEQPETAGLNRNP--------LRELL 284

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR-- 488
           E L      + +E+    L G         L + +P  S + + +      + + + R  
Sbjct: 285 EKLSEGIPGEGMESLIPALVGGEMQL----LSDLLPAGSRVLLADPERIRTRCADLVRTG 340

Query: 489 -GDFHRKATLAEYGFRLP---SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544
                        G   P   S    R L             VVS +P    L     ++
Sbjct: 341 QEFLEASWLATGSGGEAPIDVSGSAYRDLTTTLAQSTATGRPVVSLSPL---LSGADDVV 397

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           V  +           EI   R   +    ++      G   +L +  +  A+   E L +
Sbjct: 398 VPAVH----------EIEPYRGDTDRAITDLRAHVATGGAAVLVLAGQGTADRSLEQLRD 447

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             +      S+V TL            K  V V    +  G    E GLV I +AD  G
Sbjct: 448 AEVPA----SKVDTLPDAPE-------KGVVTVTCGRVLNGFTATEVGLVLISEADLTG 495



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 11/149 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + +  PP +     T V   +D      +  + 
Sbjct: 798 VLTLSATPIPRTLEMSLAGIREM----SAITTPPEDRHPTLTYVGAYDDKQVAAAVRREL 853

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +   + + +     R    H ++        +      +FDVLV
Sbjct: 854 LRDGQVFYVHNRVSSIDKAAKNIQDLVPEARVAVAHGQMNEELLERTVNAFWHREFDVLV 913

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLR 666
              ++  GLDI     + +  +D  G  +
Sbjct: 914 CTTIVENGLDISNANTLIVERSDTLGLSQ 942


>gi|126437189|ref|YP_001072880.1| transcription-repair coupling factor [Mycobacterium sp. JLS]
 gi|126236989|gb|ABO00390.1| transcription-repair coupling factor [Mycobacterium sp. JLS]
          Length = 1211

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 89/519 (17%), Positives = 166/519 (31%), Gaps = 65/519 (12%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +A L      +     ++G   S +    A + +A   P +V+      A  L +E +  
Sbjct: 26  LADLSARAADKPDDLAMVGPA-SARLLVTAALAQA--GPLLVVTATGREADDLTAELRGV 82

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              +A   F S+ +    E   P  DT   +       + R+ H     L      +VV+
Sbjct: 83  IGDSA-ALFPSW-ETLPHERLSPGVDTVGARMM----LLRRLAHPDDARL-GPPLRVVVT 135

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           +   +    +        V L +G  ++   ++  LV   Y R D+   RG F V G  +
Sbjct: 136 TARSLVQPMAPGLAEVEPVTLTVGAEMDFDGVIKRLVDLAYTRCDMVAKRGEFAVRGGIL 195

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR--NVETIKIYANSHYVTPRPTLNT 394
           ++FP   E    RV  +G++I E+  F     + I    V+T+        +      + 
Sbjct: 196 DVFPPTAE-HPVRVEFWGDEISEMRMFAVADQRSIPEIEVDTVIAVPCRELLMSDEVRSR 254

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A              +           +   +   L  L        +E     L   + 
Sbjct: 255 A-------------AVLAAEHPTHENSVPGSVPDMLAKLAEGIPVDGMEALLPLLRPTDL 301

Query: 455 GEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYGFRLP-SCMDN 510
                 L +++P+ + + V +          +    R       + A  G   P      
Sbjct: 302 ----AMLSDHLPDGAPILVCDPEKVRTRAGDLIKTGREFLEASWSTAAVGGAAPIDLEAM 357

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR---SARTQ 567
               F  +  +R                +  G     + + +      ++IR   SAR Q
Sbjct: 358 GASGFLGFEEVRT-------------GARAGGHPWWTLSQLSDEKAIELDIRSAPSARGQ 404

Query: 568 ---VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
              VE+++  +      G    +       A  + E L E +               +E 
Sbjct: 405 QSSVEEIFAMLRAHVATGGYGAVVTPGAGTAHRVVEQLGENDTPA----------TMLEP 454

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             + + G   VL G   L +G+ +P   LV + +AD  G
Sbjct: 455 GEEPKAGVVGVLKGP--LHDGVVLPGANLVIVTEADLTG 491



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 66/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E     T V   +D      L  + 
Sbjct: 793 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGPQDDKQVAAALRREL 848

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +        R  +     +       R +  H ++        +      ++D+LV
Sbjct: 849 LRDGQAFYIHNRVRTIDQAASKIAALVPEARVVVAHGQMPEELLERTVEGFWNREYDILV 908

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +     +  
Sbjct: 909 CTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPPEQP- 963

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N +  
Sbjct: 964 ---LTETAYDRLATIAQNNELG 982


>gi|312796442|ref|YP_004029364.1| transcription-repair coupling factor [Burkholderia rhizoxinica HKI
           454]
 gi|312168217|emb|CBW75220.1| Transcription-repair coupling factor [Burkholderia rhizoxinica HKI
           454]
          Length = 1165

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 89/529 (16%), Positives = 178/529 (33%), Gaps = 71/529 (13%)

Query: 151 GDQPAA-IAQLLKGIHSREKVQLLLGVTGSGKTFTMAK--VIEAMQRPAI-VMAPNKILA 206
            D P A  A  +  I   ++     G +GS     +A+  +    + P + ++  + + A
Sbjct: 9   PDSPPAPFACPVPFIKEGQRYAFD-GASGSADALAIARYHLAYRDRMPMLALICASAVDA 67

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266
            +L  E   F P   V               +P  +T      S ++ +   R +    L
Sbjct: 68  QRLQQEIGCFAPDVRVRL-------------LPDWETLPYDTFSPHQDLVSERLATLHDL 114

Query: 267 LERND-CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
            E     +VV + + +Y +      +    + K G  +++ +L S L    Y+     + 
Sbjct: 115 GEGRCDILVVPATTALYRMPPATFMAAYTFEFKQGQRLDEAKLKSRLTLAGYEHVSQVVR 174

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
            G + V G  I++FP     + +R+ +F + I+ I  F P T + +  V  +++     +
Sbjct: 175 PGEYCVRGSLIDLFPMGSS-LPYRIDLFDDQIDSIRAFDPDTQRSLYPVHDVRLLPGREF 233

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
                   TA +      + R        R               + +        IE Y
Sbjct: 234 PFD-EAARTAFRS-----RWRAEFEGDPSR-----------APIYKDIGNGVPSAGIEYY 276

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDS-LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
                     E   TLF Y+PE + L+ V +   +I Q S     +  ++     +    
Sbjct: 277 LPLFF-----EDTATLFHYLPEHTHLVLVGDIEASIRQFSA----ETKQRHAFLSHERER 327

Query: 505 PS-CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           P        L  +++  L      +S        +         +  P+  +D     R 
Sbjct: 328 PILAPARLFLSEQDFFTLAKPFARLS-----LGTKSSDDAQRWSMPLPSLAID-----RH 377

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           A+  V+ +   +  A   G R+LL   +    E L++ L + ++R     S         
Sbjct: 378 AQDPVDALRRYLGTA---GHRVLLVAESAGRRETLSQLLVDHHLRASLFDS--------- 425

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
                  G     + +  +  G  +P   +  + + +  G L  + S  
Sbjct: 426 -FDAFVQGDAPFGLAVAPVASGFVLPAEHIALVTETELYGPLARRASRR 473



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 11/118 (9%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   + E  I V   H ++   +   ++RD    + +VL+   ++  G+D+P    + I 
Sbjct: 843 LEALVPEARIAVA--HGQMHERDLERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIH 900

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE--KQLE 713
            ADK G  +    L Q  GR  R+ +           +S+     +  RR E  +Q+E
Sbjct: 901 RADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVNDPQSLSR---QAQRRLEAIQQME 951


>gi|118619716|ref|YP_908048.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
           ulcerans Agy99]
 gi|118571826|gb|ABL06577.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
           ulcerans Agy99]
          Length = 1222

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 98/523 (18%), Positives = 179/523 (34%), Gaps = 73/523 (13%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             QL+     R     L+G   S ++F  + + +    P +V+      A  + +E +  
Sbjct: 26  FQQLIARASDRPDELTLVGPA-SARSFVASALAQQG--PLLVVTATGREADDVTAELRGV 82

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           F   AV  F S+ +    E   P  DT   +   +        H     L      +VV+
Sbjct: 83  FGE-AVALFPSW-ETLPHERLSPGVDTVGARLLLLRRL----AHPDDTRL-GPPLRVVVT 135

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           +V  +    + +   Q  V L +G  +   E+++ LV+  Y R D+   RG F V G  +
Sbjct: 136 AVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVRGGIL 195

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE--TIKIYANSHYVTPRPTLNT 394
           ++F +   +   RV  +G++I E+  F     + I  +E  T+   A    +        
Sbjct: 196 DLF-APTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLLTEDVRAR 254

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A             +       +    ++      L  L        +E     L     
Sbjct: 255 AAAL--------AAQHPASENTVTGSVIDM-----LAKLAEGIPTDGMEALLPVLRP--- 298

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY---RGDFHRKATLAEYGFRLPSCMDNR 511
            +    L + + E + + V +      + + +    R       ++A  G   P  +D  
Sbjct: 299 -DDHALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAP--VDVE 355

Query: 512 PLRFEEWNCLRP-TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR---SARTQ 567
            L    +  L    T   S+    W L Q                   +E+R   SAR  
Sbjct: 356 ALGGSGFAELEQVQTAASSSGHPWWTLSQLSEESA-----------TELEVRAAPSARGH 404

Query: 568 ---VEDVYDEINLAAQQ-GLRILL---TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
              ++D++  +       G  +++   T    RM E L E             S++    
Sbjct: 405 QKDIDDIFAMLRAHVSTGGYAVMVEPGTGTAHRMVERLAE-------------SDIPAAM 451

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            +E     +LG   VL G   LR+G+ +P   LV + + +  G
Sbjct: 452 -LEPGAAPKLGVVGVLKGP--LRDGVIVPGANLVVVTETNLTG 491



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E     T V   +D      L  + 
Sbjct: 793 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGPHDDKQVAAALRREL 848

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +           +D    + +     R +  H ++        ++     +FD+LV
Sbjct: 849 LRDGQAFYVHNRASSIDDTAARIRKLVPEARVVAAHGQMPEDLLERTVQGFWQREFDILV 908

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +        
Sbjct: 909 CTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPPQAP- 963

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N +  
Sbjct: 964 ---LTETAYDRLATIAQNNELG 982


>gi|297616314|ref|YP_003701473.1| transcription-repair coupling factor [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144151|gb|ADI00908.1| transcription-repair coupling factor [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 1081

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 94/228 (41%), Gaps = 18/228 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +  L   +    +  ++ G+ GS ++F +  +    +   + + P +  A  L+ E + F
Sbjct: 10  VRSLTTRVRPG-RPGMISGLAGSARSFFLYLLATRTEDTLVCLVPLEEQAYDLHRELRGF 68

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND---CI 273
              +AV  +             P  D     E   N      R S    L   +     +
Sbjct: 69  LGPDAVCLY-------------PSQDLVFWHEGRENSFSRMTRLSTLSRLASGHQQVKVL 115

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           + ++ S +  + S + + +  + L +   +  ++ +  LV+  Y+R  +    G+F + G
Sbjct: 116 IATAGSLVTKVLSPQEFRRQTLTLAVKQEINLEKTMRRLVELGYQRCQVVTDPGSFGLRG 175

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
             ++++P    +  +R+ ++ ++IE I  F PLT +  + + ++ I  
Sbjct: 176 GVLDVYPPDQTE-PFRLELWADEIESIRSFDPLTQRSGKKLTSVSISP 222



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 7/178 (3%)

Query: 526 IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
           + +SATP    L     G+    +I        P+         + + + I    ++G +
Sbjct: 699 LSLSATPIPRTLHMALTGLRDLSVIETPPPDRYPITTYVLEYNEDIIREAIRAEVERGGQ 758

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           +       +  E    +L      V+    H  V   E  +I++     +F VLV   ++
Sbjct: 759 VFAVHNRIQDIEMFRNHLQMLVPEVKMEVAHGRVPEDELADIMKRFLNQEFQVLVCTTII 818

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
             GLD+P    + + +AD+ G  +    L Q  GR  R+       +     KS+  A
Sbjct: 819 ESGLDMPNVNTLIVDEADRLGLAQ----LYQLRGRVGRSKRLAYAYFTYRPDKSVTEA 872



 Score = 38.5 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 65/206 (31%), Gaps = 41/206 (19%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL-RFEEWN 519
           L +Y+ +DSL+F+DE            R      A   E GF+     D   L  ++E  
Sbjct: 234 LLDYVSQDSLVFLDERREFERCFHRQARRQEELLAAAKEKGFK---TDDMDALFTWDEVE 290

Query: 520 CLRPT--TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
            L      I  +  PG   ++  +    + I +         E+       E     I  
Sbjct: 291 ALINRHPVIYHAFFPGQLNIQPLE--FYQHISQK--------EMEPFFAHPELTARRIKE 340

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              QG  + + +  ++M                      K   R E+  +   G   V+V
Sbjct: 341 WVGQGYSVAVAMSDRKM----------------------KNKIREELGLNTVPG---VVV 375

Query: 638 GINLLREGLDIPECGLVAILDADKEG 663
               + +G   P   +  + D D  G
Sbjct: 376 TDWDIEKGFISPTLKMAVLSDRDVWG 401


>gi|119897964|ref|YP_933177.1| transcription-repair coupling factor [Azoarcus sp. BH72]
 gi|119670377|emb|CAL94290.1| transcription-repair coupling factor [Azoarcus sp. BH72]
          Length = 1150

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 88/525 (16%), Positives = 175/525 (33%), Gaps = 99/525 (18%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            AIA+L            L  + GS     +A++     R   V+  N I A +L  E  
Sbjct: 10  PAIARL--AFPKPGTRLDLPALAGSADALAIAQLAGQ-GRMIAVITANPIDAQRLQDELA 66

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
              P                   +P  +T      S ++ +   R S   ++      +V
Sbjct: 67  WVAPDLRSHL-------------LPDWETLPYDSFSPHQDLISERLSTLYAVSRGEVDVV 113

Query: 275 -VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
            V + + +Y +      +     +K GD ++ + L   +    Y      +  G F V G
Sbjct: 114 LVPAPTALYRLAPPAYLAAYTFFMKQGDRLDVEALRKQMALAGYAHVTQVVSPGEFSVRG 173

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++++P     + +R+ +F +++E I  F P + + +   + I++     +        
Sbjct: 174 GLVDLYPMGSA-LPYRIDLFDDEVESIKTFDPDSQRTVYPTKEIRLLPAREFP------- 225

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD------LEMLETTGSCQSIENYSR 447
                           L+ +GR     R  +    D       + +    +   IE Y  
Sbjct: 226 ----------------LDDKGRTHFRSRFRESFEGDPTRAAVYKDVSNGIAPAGIEYYLP 269

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP-QISGMYRGDFHRKATLAEYGFRLPS 506
                   +   TLF+Y+P D  + +   H  +P  I+  +R    R   L   G R   
Sbjct: 270 LFF-----DETATLFDYLPTDVPVLL---HRDVPGAIAEFWRDTRSRYDLL--KGDR--- 316

Query: 507 CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
              +RP+       + P  + +S       L+    I +    +      P  E+   R 
Sbjct: 317 ---SRPV-------MPPEQLFLSEEAFFLALKDRPRIAIGADSKLADAALPLPELAVERK 366

Query: 567 QVEDVYD----EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-------VRYMHSE 615
             + ++     +     + G RILL   +    E + E+L E  ++         ++ ++
Sbjct: 367 ATDPLHKFKAFQAGEWGRDGGRILLLADSPGRRETMAEFLAEYGLKPAASADFAGFLDTD 426

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
                       L LG          L  G  +P+  +  + +A+
Sbjct: 427 AP----------LALGVAP-------LAAGFLLPDAKIAVVTEAE 454



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L E L E  I V   H ++   E   ++RD    + ++L+   ++  G++IP    + I
Sbjct: 835 ELAELLPEARIVVG--HGQLPERELERVMRDFTQQRANLLLCTTIIETGINIPTANTIVI 892

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
             AD+ G  +    L Q  GR  R+ +     YA  +T +      +  +R E
Sbjct: 893 NRADRFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTDAHAKPTAQAQKRLE 938



 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 14/135 (10%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           ++ ++ +   +  +   L  L                      +    D+  F     + 
Sbjct: 558 EKAKKKAAMQVRDTAAELLALYAQR----------AARPGHRFDFKQHDLEAFAEAFGFE 607

Query: 149 PSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKI 204
            + DQ AAI  ++  + S     +L+ G  G GKT      A +  A  +  +V+ P  +
Sbjct: 608 TTPDQQAAIDAVVGDMKSGRPMDRLVCGDVGFGKTEVALRAAFIAVADGKQVVVLCPTTL 667

Query: 205 LAAQLYSEFKNFFPH 219
           LA Q Y  F + F  
Sbjct: 668 LAEQHYQTFADRFAD 682


>gi|72382209|ref|YP_291564.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           str. NATL2A]
 gi|72002059|gb|AAZ57861.1| transcription-repair coupling factor [Prochlorococcus marinus str.
           NATL2A]
          Length = 1167

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 121/331 (36%), Gaps = 40/331 (12%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +L++  +  E++  L G + + K      + +   +  +V+ P    A + Y   K+   
Sbjct: 18  ELIERTNREERLI-LTGASRTAKALITTSLAKNESKRLLVIVPTLEDATRWYPLVKDCGW 76

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
                Y  S    Y  E     ++    +   +++ ++         L +  +  ++++ 
Sbjct: 77  TKTCLYPTSEVSPY--ETTQVTSEIIWGQLQVLSDILE---------LKDDENIAIIATE 125

Query: 279 SCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             +   +   E   +  ++L +GD +   +L   L +  Y + +     GT+   GD I+
Sbjct: 126 RSLQPHLPPFEHLREKCIKLNVGDEINLSDLSLKLSESGYIKSNNIDQEGTWTRRGDIID 185

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           I+P   E +  R+ +FG+ +++I EF P++ + +  +  + I                  
Sbjct: 186 IYPVSSE-LPIRLELFGDLLDKIKEFDPISQRSLDQINNVCITPTGFDPLI--------- 235

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
                            +L+     +    +  +          +++  +YL      + 
Sbjct: 236 ---------------INKLISTDNKDISSLFTNDEFSELVDSNKLDSAKKYLG--VAFDK 278

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           P +L +Y+ + + + VDE    I      Y 
Sbjct: 279 PSSLLDYLDDKTFIVVDERFQGISHGKAWYN 309



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 19/196 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E +   I+   
Sbjct: 771 VLTLSATPIPRTLYMSLSGVREMSLITT----PPPLRRPIKTHLAPLDNEIIRSAISQEI 826

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G +I   V   +  ED+ E L      V+ +  H +++       +     G+ D+L+
Sbjct: 827 DRGGQIFYIVPRIKGIEDVAEKLKIMIPNVKLLIAHGQMEEGALENAMLAFNAGEADILL 886

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I D+ K G L     L   +GR+    ++ +   +D      
Sbjct: 887 CTTIVESGLDIPRVNTILIEDSHKFG-LSQLYQLRGRVGRSGVQAHAWLFYPSDEK---- 941

Query: 698 QLAIDETTRRREKQLE 713
              ++ET+R+R K ++
Sbjct: 942 ---LNETSRQRLKAIK 954


>gi|90408104|ref|ZP_01216274.1| transcription-repair coupling factor [Psychromonas sp. CNPT3]
 gi|90310790|gb|EAS38905.1| transcription-repair coupling factor [Psychromonas sp. CNPT3]
          Length = 1158

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 89/542 (16%), Positives = 183/542 (33%), Gaps = 70/542 (12%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            +       LL  + GS  +  ++++ +    P I++  +   A +L  E   F   +  
Sbjct: 11  ALKKCNDRLLLANLQGSTVSLAISELSKQKNSPLILIVNDTPSALKLKQELHFFLEDSIE 70

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM-RHSATRSLLERNDCIVVSSVSCI 281
                 ++    + + P  D        I+ +I+ + R    +        ++V   + +
Sbjct: 71  IIDFPDWETLPYDHFSPHQDI-------ISTRIETLYRLPGLK-----KGILIVPINTLL 118

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             I       +  + +K G+ VE ++L + L    Y   +  +  G F   G  ++IFP 
Sbjct: 119 LRIAPPSYLKKHTLIVKTGEQVELQDLRADLESSGYYAVEKVLEHGEFCARGSLLDIFPM 178

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
                 +R+  F ++I+ I  F   T + +  ++ IK+     + T       A+K  KE
Sbjct: 179 -GALKPYRIDFFDDEIDSIRTFDRETQRSLDIIKEIKLLPAHEFCTDHE----AIKRFKE 233

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           +   +               L Q        +  T     IE Y          E   TL
Sbjct: 234 KFTEQ---FTSP--------LTQEKGSIFSTISDTNLPAGIEYYLPLFF-----ESTATL 277

Query: 462 FEYIPEDSLLFV--DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519
           F+Y P++S L +  D +  T+    G+ +    R   L            +RPL      
Sbjct: 278 FDYFPKESTLLISGDINQATLDFWVGLEKRYIDRSVDL------------HRPLLKPNAL 325

Query: 520 CLRPTTIV--VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
            LR       ++A P  + L+     +          + P V++    T+++D    I  
Sbjct: 326 YLRHEQCFELLNAWPRYY-LQNTPCQVKAGRTNFYVSLLPDVQVN---TKLKDPLSAIRQ 381

Query: 578 AAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  RI+ +V +    + L E L    I++             +        K  + 
Sbjct: 382 FISDFDGRIVFSVESVGRQQSLLELLAPLKIKIA----------SCDNFSAFIKSKKQIA 431

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           + I+ +     +    +  I + +  GF  +     Q  G    +  +    +     + 
Sbjct: 432 IIISCIENSFILAHKKIAFITENELLGFKIT-----QRRGNTDHHDENYSSEHILRNLEE 486

Query: 697 IQ 698
           ++
Sbjct: 487 LK 488



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 61/179 (34%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      + +  I  T              + + +  D I     +G 
Sbjct: 761 ILTLTATPIPRTLNMSMNGMRDLSIIATPPSKRLAVKTFVEQKTDALISDAITREIMRGG 820

Query: 584 RILLT---VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           ++      V T   A    E L     +V   H ++   +   I+ D    + +VLV   
Sbjct: 821 QVYFLHNNVETINKAAADIEALVPSA-KVSVAHGQMNEHQLERIMSDFYHQRQNVLVCTT 879

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K +  
Sbjct: 880 IIETGIDIPSANTIIINRADHLGLAQ----LHQLRGRVGRSHHQAYAYLLTPTRKLMSK 934



 Score = 40.8 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFTMAK---VIEAMQR 194
             F+    +  + DQ  AI  +L  + SR+   +L+ G  G GKT    +   +     R
Sbjct: 601 ALFKQAFPFEETPDQSNAINAVLNDMCSRQPMDRLICGDVGFGKTEVAMRATFLAVDNTR 660

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAV 222
              ++ P  +LA Q Y  FK+ F    V
Sbjct: 661 QVAILVPTTLLAQQHYENFKDRFASWPV 688


>gi|153830805|ref|ZP_01983472.1| transcription-repair coupling factor [Vibrio cholerae 623-39]
 gi|148873712|gb|EDL71847.1| transcription-repair coupling factor [Vibrio cholerae 623-39]
          Length = 323

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 110/298 (36%), Gaps = 36/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+     +A++  A     ++  P+   A +L  E    F H+ V  F  + +    +
Sbjct: 24  LHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEV-EQFSHSEVALFPDW-ETLPYD 81

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D        I+++I R+     +         +V   + +      +   Q  +
Sbjct: 82  NFSPHQDI-------ISDRISRL----YQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTL 130

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  F +
Sbjct: 131 IVKRGDHFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDFFDD 189

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F P   + I  ++ I++     +    PT   A++  +   + R         
Sbjct: 190 EIDTIRTFDPDNQRSIAEMDEIRLLPAHEF----PTTAAAIEEFRNRWRQR--------- 236

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
             EA+R  + +      +        IE +          E   TLF+Y+P +S L V
Sbjct: 237 -FEARREPESV---YSQVSKGTWPAGIEYWQPLFF-----EHSETLFDYLPANSQLLV 285


>gi|300691385|ref|YP_003752380.1| transcription-repair ATP-dependent coupling factor, helicase
           [Ralstonia solanacearum PSI07]
 gi|299078445|emb|CBJ51097.1| transcription-repair ATP-dependent coupling factor, helicase
           [Ralstonia solanacearum PSI07]
          Length = 1143

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 81/529 (15%), Positives = 168/529 (31%), Gaps = 81/529 (15%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAP-NKILAAQLYSEFKNFFPHN 220
           +   ++  +  G+ GS     +A+ +E  +   P + +   N + A +L  E + F P  
Sbjct: 12  VKPGQRF-VFSGLQGSADALLLARYLEQHRGTVPMLAVVCANAVDAQRLAEELRWFAPQA 70

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVS 279
            V+              +P  +T      S ++ +   R +    L       ++V + +
Sbjct: 71  RVKL-------------LPDWETLPYDNFSPHQDLISERLATLHDLQGGACDILLVPAST 117

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
            +  I      +      K G+ +++  L +      Y+     +  G + V G  I++F
Sbjct: 118 ALQRIAPPSFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLF 177

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P     + +R+ +FG++I+ I  F P T + +  V  +++     +              
Sbjct: 178 PM-GSPMPYRLDLFGDEIDTIRAFDPDTQRSLYPVNEVRLLPGREFPMDEAARTAF---- 232

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
                         GR  E    +       + +        IE Y          E   
Sbjct: 233 -------------RGRWREVFEGDPTRAPIYKDIGNGVPSAGIEYYLPLFF-----ETTA 274

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA-EYGFRLPSCMDNRPLRFEEW 518
           TLF+Y+P  + + +         +   +     R   +  +    L +           +
Sbjct: 275 TLFDYLP--AGVHLALVGDIEGAVRRFWADTTQRYNFMRHDRDRPLLAPSALYLDEEAFF 332

Query: 519 NCLRPTT-IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
              +P   +V+ A PG                 P  L  P V +       + + +  + 
Sbjct: 333 IAAKPHARLVLRAEPGD---------------APLSLPLPNVAVNRRAE--DPLVNLESF 375

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                 R+++   +    E L + L         +H E  T        DL  G    ++
Sbjct: 376 LMHGNYRVMICAESAGRRETLAQMLAASG-----LHPEGVTDC-----ADLVGGDARFVL 425

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           G+  L +G          IL  ++  F+       Q + R  R    + 
Sbjct: 426 GVAPLYQGF---------ILGDERIAFITETELYAQAVRRGGRRKQEQA 465



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 75/198 (37%), Gaps = 20/198 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + I    ++
Sbjct: 752 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGV--LREAILRELKR 809

Query: 582 GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E+    L   + E  + V   H ++   E   ++RD    + ++L+
Sbjct: 810 GGQVYFLHNEVETIENKRAKLEALVPEARVAVA--HGQMHERELERVMRDFVAQRANILL 867

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  +DK G  +    L Q  GR  R+ +             +
Sbjct: 868 CTTIIETGIDVPTANTILIHRSDKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDADGL 923

Query: 698 QLAIDETTRRRE--KQLE 713
                +  RR E  +Q+E
Sbjct: 924 TK---QAQRRLEAIQQME 938


>gi|183984436|ref|YP_001852727.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
           marinum M]
 gi|183177762|gb|ACC42872.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
           marinum M]
          Length = 1222

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 98/523 (18%), Positives = 179/523 (34%), Gaps = 73/523 (13%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             QL+     R     L+G   S ++F  + + +    P +V+      A  + +E +  
Sbjct: 26  FQQLIARASDRPDELTLVGPA-SARSFVASALAQQG--PLLVVTATGREADDVTAELRGV 82

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           F   AV  F S+ +    E   P  DT   +   +        H     L      +VV+
Sbjct: 83  FGE-AVALFPSW-ETLPHERLSPGVDTVGARLLLLRRL----AHPEDTRL-GPPLRVVVT 135

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           +V  +    + +   Q  V L +G  +   E+++ LV+  Y R D+   RG F V G  +
Sbjct: 136 AVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVRGGIL 195

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE--TIKIYANSHYVTPRPTLNT 394
           ++F +   +   RV  +G++I E+  F     + I  +E  T+   A    +        
Sbjct: 196 DLF-APTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLLTEDVRAR 254

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A             +       +    ++      L  L        +E     L     
Sbjct: 255 AAAL--------AAQHPASENTVTGSVIDM-----LAKLAEGIPTDGMEALLPVLRP--- 298

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY---RGDFHRKATLAEYGFRLPSCMDNR 511
            +    L + + E + + V +      + + +    R       ++A  G   P  +D  
Sbjct: 299 -DDHALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAP--VDVE 355

Query: 512 PLRFEEWNCLRP-TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR---SARTQ 567
            L    +  L    T   S+    W L Q                   +E+R   SAR  
Sbjct: 356 ALGGSGFAELEQVQTAASSSGHPWWTLSQLSEESA-----------TELEVRAAPSARGH 404

Query: 568 ---VEDVYDEINLAAQQ-GLRILL---TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
              ++D++  +       G  +++   T    RM E L E             S++    
Sbjct: 405 QKDIDDIFAMLRAHVSTGGYAVMVEPGTGTAHRMVERLAE-------------SDIPAAM 451

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            +E     +LG   VL G   LR+G+ +P   LV + + +  G
Sbjct: 452 -LEPGAAPKLGVVGVLKGP--LRDGVIVPGANLVVVTETNLTG 491



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E     T V   +D      L  + 
Sbjct: 793 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGPHDDKQVAAALRREL 848

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +           +D    + +     R +  H ++        ++     +FD+LV
Sbjct: 849 LRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQGFWQREFDILV 908

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +        
Sbjct: 909 CTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPPQAP- 963

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N +  
Sbjct: 964 ---LTETAYDRLATIAQNNELG 982


>gi|33861396|ref|NP_892957.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33633973|emb|CAE19298.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 1171

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 90/517 (17%), Positives = 195/517 (37%), Gaps = 72/517 (13%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I +L+K I        ++G +   K+  +  +     +  ++++PN+ +A + Y  F + 
Sbjct: 16  IIELVKRIKHN-NELNIIGSSRYAKSIIINSIANKENKDILLISPNEEIAYKWYGYFDSI 74

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              N + Y  S    Y         +T   + S I++ I + R         +   I+++
Sbjct: 75  DNRNVLYYPPSENLPYASINR--SKETEYSQLSVISKIIKKER---------KELNIIIT 123

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +   +   +  +  + + I  L  G+ ++ KEL   LV   Y ++++    G++   G+ 
Sbjct: 124 TERSLQPHLIKINQFKENIFTLIKGNELDIKELTKKLVLLGYNKENLTSQEGSWSRRGEI 183

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+I+P + E +  R+  F N I++I E+ P++ + + +V  ++I      +         
Sbjct: 184 IDIYPVNNE-LPVRIEYFDNIIDKIREYDPVSQRTLDSVNKVEIVQVGFNLL-------- 234

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              I++ L+                 L ++ T++ E + T        N  RYL      
Sbjct: 235 ---IRKSLE----------------NLSEQGTFNSEEITTKN------NLDRYLGVIE-- 267

Query: 456 EPPPTLFEYIPEDSLLFVDESHVT-IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
           E P  L +YI +++L+ +DE         +     D + +    E    L S   N  ++
Sbjct: 268 EHPSNLLDYINKETLIVIDEKEECNKFSNNWCLESDNNFELHKDEIANNLKSNNINIKVK 327

Query: 515 ---FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
               E++  +  T    +     +E E  +  +  + +     ++       +   +  +
Sbjct: 328 SNLHEKFESIIKTFSNYN-VINLYEFE-SKRNLDNRFLLSDKRINT------SSKHIGKL 379

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             EIN       ++ +        + L    +E      Y+         +E    L   
Sbjct: 380 SKEINKFILNKDKVWILSAQPLRTKSL---FFEHECNTTYL----DKPNDLESAHKLIEN 432

Query: 632 KFDVLV--GINLLREGLDIPECGLVAILDADKEGFLR 666
              V++    N   EG  +P   ++ I   DKE F +
Sbjct: 433 STPVIIKNKNNYEIEGFYLPIWKVILI--TDKELFSQ 467



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 77/193 (39%), Gaps = 13/193 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-VEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +  T       ++   +   ++ +   I+    +G 
Sbjct: 765 VLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAISQELDRGG 824

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I   +      +     L      ++Y+  H ++  ++    +     G+ D+++   +
Sbjct: 825 QIFYVLPRISDIDQAVNKLKNMFKDLKYIVAHGQMNEIDLENAMIAFNNGEVDLMICTTI 884

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLA 700
           +  GLDIP    + I D+ K G  +    L Q  GR  R+   +   L+   I K     
Sbjct: 885 IESGLDIPRVNTIVIEDSHKFGLSQ----LYQLRGRVGRSGIQAHAWLFYPNINK----- 935

Query: 701 IDETTRRREKQLE 713
           I+E +++R K ++
Sbjct: 936 INEASKQRLKAIK 948


>gi|332534806|ref|ZP_08410631.1| transcription-repair coupling factor [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035770|gb|EGI72256.1| transcription-repair coupling factor [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 1137

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 109/298 (36%), Gaps = 37/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           ++GSG +  +A+ ++      +++ P+   A +L +E +   P N V  F          
Sbjct: 4   LSGSGLSIAIAEGVKQQDNLVLIVTPDTPSALRLETELEYLLPDNPVMVF---------- 53

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLL-ERNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R +   +L  E+   ++V   + +             
Sbjct: 54  ---PDWETLPYDHFSPHQDIISARLATLNTLKKEQRSVLIVPVSTLMLRTAPASFIYGST 110

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           +  K+GD ++      +L +  Y      +  G + + G  ++++P       +R+  F 
Sbjct: 111 INFKVGDKLDTHNFRDNLEQAGYLNVQQVMEHGEYAIRGSIVDLYPM-GSPHPFRLDFFD 169

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++++ I  F   T +    V+ I++     + T    +             R+   EK G
Sbjct: 170 DELDSIRLFDVETQRSDEKVDKIELLPAHEFPTNDADIERF----------RISYREKFG 219

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
              +   +  +++              IE Y          E   T+F+Y+P+ + + 
Sbjct: 220 ASSQQDSVYMQVSK-------GNWPAGIEYYMPLFF-----EKLATIFDYLPDTTTVM 265



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 68/178 (38%), Gaps = 7/178 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+    +  VE + + +    ++G 
Sbjct: 740 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRQRDVELIREAVLREIKRGG 799

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E + + + E          H +++  E  +I+ D    K++VLV   +
Sbjct: 800 QVYFLHNNVETIERVAQEISEWVPEASVTTAHGQMREQELEQIMTDFYHQKYNVLVCTTI 859

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+D+P    + +  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 860 IETGIDVPTANTIIMDRADKLGLAQ----LHQLRGRVGRSHHQAYAYLLTGDPKALSK 913



 Score = 37.8 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            +  + DQ  AI  +L  + S++   +L+ G  G GKT      A V     +   ++ P
Sbjct: 587 PFEETDDQRNAIEAVLGDMQSKQAMDRLVCGDVGFGKTEVAMRAAFVAVNDDKQVAILVP 646

Query: 202 NKILAAQLYSEFKNFFPHNAVE 223
             +LA Q Y  FK+ F    +E
Sbjct: 647 TTLLAQQHYENFKDRFADFPIE 668


>gi|299066652|emb|CBJ37845.1| transcription-repair ATP-dependent coupling factor, helicase
           [Ralstonia solanacearum CMR15]
          Length = 1143

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 90/529 (17%), Positives = 173/529 (32%), Gaps = 81/529 (15%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAP-NKILAAQLYSEFKNFFPHN 220
           +   ++  +  G+ GS     +A+ +E  +   P + +   N + A +L  E + F P  
Sbjct: 12  VKPGQRF-VFSGLQGSADALLLARYLEQHRDAVPMLAVVCANAVDAQRLADELRWFAPQA 70

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVS 279
            V+              +P  +T      S ++ +   R +    L       ++V + +
Sbjct: 71  RVKL-------------LPDWETLPYDNFSPHQDLISERLATLHDLQGGACDLLLVPAST 117

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
            +  I      +      K G+ +++  L +      Y+     +  G + V G  I++F
Sbjct: 118 ALQRIAPPSFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLF 177

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P     + +R+ +FG++I+ I  F P T + +  V  +++     +              
Sbjct: 178 PM-GSPMPYRLDLFGDEIDTIRAFDPDTQRSLYPVNEVRLLPGREFPMDEAARTAF---- 232

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
                         GR  E    +       + +        IE Y          E   
Sbjct: 233 -------------RGRWREVFEGDPTRAPIYKDIGNGVPSAGIEYYLPLFF-----ETTA 274

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN-RPLRFEEW 518
           TLF+Y+P  + L +      +  I G  R       T   YGF      D  RPL     
Sbjct: 275 TLFDYLPAAAHLAL------VGDIEGAVRRF--WADTTQRYGFM---RHDRDRPLLAPPA 323

Query: 519 NCLRPTTIVVSATP-GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
             L      V+A P     L    G     +  P+  V+   E        + + +  + 
Sbjct: 324 LYLDEEAFFVAAKPYARLVLRAEPGEAPLSLPLPSVAVNRRAE--------DPLVNLESF 375

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +   R+++   +    E L + L         +H E      +    DL  G    ++
Sbjct: 376 LTRGNCRVMICAESAGRRETLAQMLAASG-----LHPEG-----VADCADLMGGDARFVL 425

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           G+  L +G          IL  ++  F+       Q + R  R    + 
Sbjct: 426 GVAPLYQGF---------ILGDERIAFITETELYAQAVRRGGRRKQEQA 465



 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 75/198 (37%), Gaps = 20/198 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + I    ++
Sbjct: 752 ILTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGV--LREAILRELKR 809

Query: 582 GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E+    L   + E  + V   H ++   E   ++RD    + ++L+
Sbjct: 810 GGQVYFLHNEVETIENKRAKLEALVPEARVAVA--HGQMHERELERVMRDFVAQRANILL 867

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +             +
Sbjct: 868 CTTIIETGIDVPTANTILIHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDADGL 923

Query: 698 QLAIDETTRRRE--KQLE 713
                +  RR E  +Q+E
Sbjct: 924 TK---QAQRRLEAIQQME 938


>gi|154507723|ref|ZP_02043365.1| hypothetical protein ACTODO_00205 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797357|gb|EDN79777.1| hypothetical protein ACTODO_00205 [Actinomyces odontolyticus ATCC
           17982]
          Length = 1194

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 84/580 (14%), Positives = 176/580 (30%), Gaps = 84/580 (14%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            AI   +  + +  +   ++   G  +   +A V      P +V+      A  L +   
Sbjct: 14  PAIETAIDSVEAG-RSGTIVAPVG-IRPPLLAAVASRAATPLVVLTATGRDAESLTNALA 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           ++ P  A+      ++    E   P+ DT   + +     + R+ H  T         ++
Sbjct: 72  SWIPGVAML---PAWETLPHERLSPQVDTMARRIAV----LRRLVHPITGDDSAGPMSVL 124

Query: 275 VSSVSC-----IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           V  +       I G+  +E        ++ GD ++  E  + L +  Y+R D+   RG  
Sbjct: 125 VVPIRAFLQPIISGLADLEPVR-----VRTGDILDLTETTNRLAELGYERVDMVEGRGQM 179

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIKIYANSHYVTP 388
            V G  +++FP   E    RV ++G+++++I  F     + +    + +        +  
Sbjct: 180 SVRGGILDVFPP-QEPHPLRVELWGDEVDDIRAFSVSDQRTLGEAADGLWAVPCRELLLT 238

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
           +     A      E   RL    +   L                     +   IE+ +  
Sbjct: 239 QAVRAQA-----REAADRLPGAAEMLSLAA----------------EGIAAPGIESLAPI 277

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
           L G        +L + +P  S +   +      +I                  +   +  
Sbjct: 278 LVGGME-----SLLDLLPAGSPILASDP----ERIRARAADLVATTEEFLAAAWSAAAGG 328

Query: 509 DNRPLRFEE----------------WNCLR--PTTIVVSATPGSWELEQCQGIIVEQIIR 550
            + PL   +                W  L   P   + SA   +             ++ 
Sbjct: 329 ADTPLEASKASFLDLADLWGSGKRPWWELTDLPPADLASAIDEAEADSPSTDGPAPVVVS 388

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           PT +     ++   R        ++   A+ G RI++T         +   L + +    
Sbjct: 389 PTLMRVGARDVHPYRGDFARAAADLTDLARDGWRIVVTTEGPGPGRRIRSILTDASCPAA 448

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG-FLRSKT 669
              +            + R     V +       G   P   +  + + D  G    S  
Sbjct: 449 LADNV-----------EARPDAGLVTITTAQAGVGFVAPHLKVAILTEGDLTGRAGASTR 497

Query: 670 SLIQTIGRAARNVNSKVILYADTITKS---IQLAIDETTR 706
            + +   R  + V+   +   D I      I   I+  +R
Sbjct: 498 DMRRMPSRRRKGVDPLTLHPGDYIVHDQHGIGRFIELVSR 537



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 70/202 (34%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE-----INLAA 579
            + +SATP    LE     I E  I    L  PP E +   T V    D      I    
Sbjct: 797 VLSMSATPIPRTLEMAISGIREMSI----LQTPPEERQPVLTFVGAYTDAQVSAAIRREL 852

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++            +  ++ E     R    H ++   +   +I+D    +FDVLV
Sbjct: 853 LRDGQVFYVHNRVDSISSVAAHITELVPEARVRTAHGKMNEHQLEAVIQDFWNHEFDVLV 912

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R        +     K  
Sbjct: 913 CTTIVETGLDISNANTLIVDRADTFGLSQ----LHQLRGRVGRGRERAYAYFFYPGDK-- 966

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
             A+ ET   R K +  N +  
Sbjct: 967 --ALTETAHERLKTIAANTELG 986


>gi|319794000|ref|YP_004155640.1| transcription-repair coupling factor [Variovorax paradoxus EPS]
 gi|315596463|gb|ADU37529.1| transcription-repair coupling factor [Variovorax paradoxus EPS]
          Length = 1160

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 81/498 (16%), Positives = 158/498 (31%), Gaps = 65/498 (13%)

Query: 179 SGKTFTMAKV---IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           S     +A++    +A  R   +   +   A +L  E K F P      F          
Sbjct: 20  SADALLLAQLGMREKAAGRATAMFTADANDAQRLIDEIKFFAPDLRCALF---------- 69

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV-VSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ +   R +    + ++   +V V + + +Y +      +   
Sbjct: 70  ---PDWETLPYDSFSPHQDLISERLATLWRISQKEADVVLVPATTALYRLAPPAFLAGYT 126

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
              K    +E+ +L + L    Y      +  G + V G  I++FP     V +RV +F 
Sbjct: 127 FHFKAKQKLEESKLKAQLTLAGYSHVTQVVSPGEYAVRGGLIDLFPM-GSLVPFRVDLFD 185

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P T + +  V  +++     +                  + R  EL    
Sbjct: 186 DEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDDDARAR--------FRSRWREL---- 233

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
             LE    + RI  D   +    +   IE Y          +   T+F+Y+  D+ + + 
Sbjct: 234 --LEGDPTKSRIYKD---MGNGVATAGIEYYLPLFF-----DETATVFDYLGPDATVVLH 283

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC-MDNRPLRFEEWNCLRPTTIVVSATPG 533
                  Q       + +R   L       P+   +   L  E++             P 
Sbjct: 284 GDLEPAFQHFWQDTNERYR---LVRGDPERPALPPEALFLNAEQFYQRAK--------PH 332

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
           +  L     I  +        + P   +R A   +  +   I        R+L+   +  
Sbjct: 333 AQ-LAIRGNIATDTPYAEFDKLPPFAVVRGAEDPLVGLKAHIAATP---HRVLMIAESDG 388

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L ++L    +      S    L   E   D ++G     +    L  G    E G+
Sbjct: 389 RRESLLDFLRASGVSPPAFDS----LAEFEASTDEKIG-----IVTAALASGFAWREQGI 439

Query: 654 VAILDADKEGFLRSKTSL 671
             + + +      +    
Sbjct: 440 DLVTETELFATAPTTRRR 457



 Score = 50.9 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 19/134 (14%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            QV  +++E+     +  +             L E L E  I V   H ++   E   ++
Sbjct: 818 GQVYFLHNEVETIENRRQK-------------LEEILPEARIAVA--HGQMPERELERVM 862

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RD    ++++L+   ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +  
Sbjct: 863 RDFVAQRYNLLLCSTIIETGIDVPTANTIVMSRADKFGLAQ----LHQLRGRVGRSHHQA 918

Query: 686 VILYADTITKSIQL 699
                   T+ +  
Sbjct: 919 YAYLMVPDTEGLTK 932


>gi|257057197|ref|YP_003135029.1| transcription-repair coupling factor Mfd [Saccharomonospora viridis
           DSM 43017]
 gi|256587069|gb|ACU98202.1| transcription-repair coupling factor Mfd [Saccharomonospora viridis
           DSM 43017]
          Length = 1199

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/325 (18%), Positives = 115/325 (35%), Gaps = 38/325 (11%)

Query: 173 LLGVTGSGKT--FTMAKVIEA--MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           LL + GS  T    +A +       RP + + P    A +L +  ++    N V  F S+
Sbjct: 37  LLDLDGSTATHQLVVAALAADRGAGRPVLAVTPTGRQAEELTAALRSLLGENLVADFPSW 96

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
            +    E   PR DT         ++++ +R  A          +VV++V  +    +  
Sbjct: 97  -ETLPHERLSPRADTV-------GKRLEVLRRLAQPD--HGGLRVVVATVRSLIQPMAPG 146

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                 V+L++G   + + +L  LV+  Y R D+   RG F V G  ++IF     +   
Sbjct: 147 LGGLHPVELRVGQESDFEAVLDQLVELAYTRVDMVEKRGEFAVRGGILDIF-GPTAEHPH 205

Query: 349 RVSMFGNDIEEISEFYPLTGQKI-RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
           R+  +G+++ EI  F     + +   V  +        +        A      EL    
Sbjct: 206 RIEFWGDEVSEIRAFAVSDQRSLPGEVTEVIAPPCREILLTPDVKARA-----AELARTH 260

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
            +  +   +L               L     C+ +E     L           L + +PE
Sbjct: 261 ADNAQLSEML-------------TKLADGVPCEGMEALIPVLCEGELQL----LTDALPE 303

Query: 468 DSLLFVDESHVTIPQISGMYRGDFH 492
            + + + E   +  + + + R    
Sbjct: 304 GTHVVLIEPEKSRARAADLVRTGQE 328



 Score = 47.0 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 70/202 (34%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP +     T V   +D      +  + 
Sbjct: 788 VLTMSATPIPRTLEMSMAGIREM----STILTPPEDRHPILTYVGAYDDKQVAAAIRREL 843

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     L E     R +  H ++      +II+     ++DVLV
Sbjct: 844 LRDGQVFYVHNRVSSIERAARRLRELVPEARVVTAHGQMNEHRLEQIIQGFWEREYDVLV 903

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD+ G  +    L Q  GR  R        +     K  
Sbjct: 904 CTTIVETGLDISNANTLIVEHADQLGLAQ----LHQLRGRVGRGRERGYAYFLYPADKP- 958

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N +  
Sbjct: 959 ---LTETAHDRLATIAQNTELG 977


>gi|254384864|ref|ZP_05000200.1| transcriptional-repair coupling factor [Streptomyces sp. Mg1]
 gi|194343745|gb|EDX24711.1| transcriptional-repair coupling factor [Streptomyces sp. Mg1]
          Length = 1187

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 111/282 (39%), Gaps = 9/282 (3%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+A+ +       ++ + L    + + F +A +    +R  + +      A  L +  +
Sbjct: 24  PALAEAVTAAGDGNRMHVDLVGPPAARPFAIAALARRTERTVLAVTATGREAEDLAAALR 83

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +  P + V  + S+ +    E   PR+DT   + +     + R+ H +          +V
Sbjct: 84  SLLPPDEVAEYPSW-ETLPHERLSPRSDTVGRRIAV----LRRLAHPSKDDPAAGPVSVV 138

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           V+ +  +           + V L+ G+S +  E+  +L    Y R ++   RG F V G 
Sbjct: 139 VAPIRSVLQPQVKGLGDLVPVSLRQGESADLGEVTQALAAAAYARVELVEKRGEFAVRGG 198

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTPRPTLN 393
            +++FP   E+   RV  +G+D+EEI  F     + +   E  +        +       
Sbjct: 199 ILDVFPP-TEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELLLTDEVRE 257

Query: 394 TAMKYIKE--ELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            A     E  EL   L ++ +   +   + L   +  D+E+L
Sbjct: 258 RAAALAVEHPELGELLNKIAEGIAVEGMESLAPVLVDDMELL 299



 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD-EINLAAQQGL 583
            + +SATP    LE     I E     + +  PP E     T V    + +I  A ++ L
Sbjct: 788 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEEKQIGAAVRREL 843

Query: 584 ----RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
               +           +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 844 LREGQCFYIHNRVESIDRAAAKLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLV 903

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R        +     K  
Sbjct: 904 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRERGYAYFLYPPEKP- 958

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 959 ---LTETAHERLATIAQHTEMG 977


>gi|156973818|ref|YP_001444725.1| transcription-repair coupling factor [Vibrio harveyi ATCC BAA-1116]
 gi|156525412|gb|ABU70498.1| hypothetical protein VIBHAR_01528 [Vibrio harveyi ATCC BAA-1116]
          Length = 1153

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 96/531 (18%), Positives = 192/531 (36%), Gaps = 77/531 (14%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
              +K Q L  + G+     +A++ +     ++++ P+  +A +L +E    F    V  
Sbjct: 14  ERGDKKQ-LGNLPGAALAMAIAELAKQHSSHSLLVVPDPQIALKLQAEI-EQFTDQPVSL 71

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
           F  + +    + + P  +        I+++I R+    T+S    N   +V   + +   
Sbjct: 72  FPDW-ETLPYDNFSPHQEI-------ISDRIARLYQLPTQS----NGVTIVPVSTVLQRQ 119

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
              +   Q  + +K GD     +L   L    Y+  D     G +   G  +++FP    
Sbjct: 120 SPRDFLLQHTLMVKTGDQFSLDKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSS 179

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           D  +R+  F ++I+ I  F P   + I +++ I++     +    PT   A++  +   +
Sbjct: 180 D-PYRIDFFDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEF----PTTKAAIEDFRTRWR 234

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            +           EA+R  + I      +        IE +          +   TLF+Y
Sbjct: 235 SQ----------FEARREPESIYM---QVTKGTWPAGIEYWQPLFF-----DHTETLFDY 276

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +PEDS L       T   I        +      +Y +        RPL       L P 
Sbjct: 277 LPEDSQLI------TYGDIEASVDTFLND----VDYRYDQKKIDPMRPL-------LAPH 319

Query: 525 TIVVSATPGSWELEQ--CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
            + +         +Q     + +E+I++  G  +  V+  +     +   + +    Q  
Sbjct: 320 ELWLKKDELFTHFKQLPQAQLNLEKIVKRAGRQNLAVQSLAELGVQQQNKEPLARLRQFS 379

Query: 583 L----RILLTVLTKRMAEDLTEYLYERNIRVR-YMHSEVKTLERIEIIRDLRLGKFDVLV 637
                +I+ +V ++   E LTE L  + I+VR  +H  +      +    L LG      
Sbjct: 380 EQFTGKIIFSVESEGRREALTELL--QGIKVRPVVHGSLYQALDSDDRFSLILGA----- 432

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
                  G    +     I ++D  G       +IQ   +  + VNS  ++
Sbjct: 433 ----AEHGFIHEDLNFALICESDLLG-----DRVIQRRRKDKKAVNSDTVI 474



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 74/186 (39%), Gaps = 14/186 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q ED  V +       +G
Sbjct: 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQREDSVVREAALREIMRG 812

Query: 583 LRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++      V T  + AEDL + + E  + V   H +++  E   I+ D    +F++LV 
Sbjct: 813 GQVYFLHNQVETIEKTAEDLQKLIPEARVTVA--HGQMRERELERIMNDFYHQRFNLLVC 870

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I 
Sbjct: 871 TTIIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAIT 926

Query: 699 L-AIDE 703
             AI  
Sbjct: 927 KDAIKR 932


>gi|302534880|ref|ZP_07287222.1| transcription-repair coupling factor [Streptomyces sp. C]
 gi|302443775|gb|EFL15591.1| transcription-repair coupling factor [Streptomyces sp. C]
          Length = 1179

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 53/339 (15%), Positives = 118/339 (34%), Gaps = 33/339 (9%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+A+ +       ++ + L    + + F +A +     R  + +      A  L +  +
Sbjct: 14  PALAEAVTAAGDGNRMHVDLVGPPAARPFAIAALAARTGRTVLAVTATGREAEDLAAALR 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +  P + V  + ++ +    E   PR+DT   + +     + R+ H +          +V
Sbjct: 74  SLLPPDEVVDYPAW-ETLPHERLSPRSDTVGRRIAV----LRRLAHPSKDDPAAGPVSVV 128

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           V+ +  +           + V L+ GD+ +   +  +L    Y R ++   RG F V G 
Sbjct: 129 VAPIRSVLQPQVKGLGDLLPVSLRQGDTTDLGVVTEALAAAAYARVELVEKRGEFAVRGG 188

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTPRPTLN 393
            +++FP   E+   RV  +G+++EEI  F     + +   E  +        +       
Sbjct: 189 ILDVFPP-TEEHPLRVEFWGDEVEEIRYFKVADQRSLEIAEHGLWAPPCRELLLTDEVRE 247

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A       L  +  EL +                 L  +    + + +E+ +  L    
Sbjct: 248 RA-----AALAEQHPELGE----------------LLNKIAEGIAVEGMESLAPVLVDDM 286

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
                  L + +P  S+  V +      + + +      
Sbjct: 287 EL-----LIDVLPAGSMAVVCDPERVRTRAADLVATSQE 320



 Score = 38.5 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 64/202 (31%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + +  PP E     T V     + +   I    
Sbjct: 779 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEEKQIGAAIRREL 834

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +           +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 835 LREGQCFYIHNRVESIDRAAAKLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLV 894

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R        +     K  
Sbjct: 895 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRERGYAYFLYPPEKP- 949

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 950 ---LTETAHERLATIAQHTEMG 968


>gi|157370240|ref|YP_001478229.1| transcription-repair coupling factor [Serratia proteamaculans 568]
 gi|157322004|gb|ABV41101.1| transcription-repair coupling factor [Serratia proteamaculans 568]
          Length = 1176

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 121/297 (40%), Gaps = 35/297 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A+++E    P +++AP+   A +L  E + F   + +   +S ++    +
Sbjct: 49  LTGSACAVECAEIVERHNGPVMLIAPDMQNALRLRDEIQQFT--DQMVTTLSDWETLPYD 106

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           ++ P  +    + SS+      +R             I++   + +  +   E      +
Sbjct: 107 SFSPHQEIISARLSSLYHLPTMVR-----------GVIILPVNTLMQRVCPHEFLHGHAL 155

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K G  + + +L + L +  Y+  D  +  G F   G  +++FP   E+  +R+  F +
Sbjct: 156 VMKKGQRLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEE-PYRIDFFDD 214

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ +  F     + +  V+ I +     +    PT   A++  + + + +         
Sbjct: 215 EIDSLRTFDVDNQRTLSEVDAINLLPAHEF----PTDKNAIELFRSQWREQ--------- 261

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             E +R  + I    + +        IE +          +P P+LF Y+P+++L+ 
Sbjct: 262 -FEVRRDAEHI---YQQVSKGTWPAGIEYWQPLFFS----QPLPSLFSYLPDNTLIV 310



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 778 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREVLR 835

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E     L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 836 GGQVYYLYNDVENIEKAAAKLAELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 895

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD+ G  +    L Q  GR  R+ +           K++
Sbjct: 896 TIIETGIDIPSANTIIIERADRFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAM 949


>gi|254786005|ref|YP_003073434.1| transcription-repair coupling factor [Teredinibacter turnerae
           T7901]
 gi|237683594|gb|ACR10858.1| transcription-repair coupling factor [Teredinibacter turnerae
           T7901]
          Length = 1157

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 83/515 (16%), Positives = 178/515 (34%), Gaps = 71/515 (13%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF----KNFFPHNAVEYFVSYYDYYQP 234
           SG   ++ +  +      +V+AP+   A    S+     K       V  F + ++    
Sbjct: 27  SGAALSIVESAQNFSGNCVVVAPDMATAEIFKSDIEVLQKGRNNGRKVYLF-NDWETLPY 85

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           +++ P  D        I+E++  + H         N  I+V+S + +  +   +      
Sbjct: 86  DSFSPHQDI-------ISERMRCLYHL----HASDNCIIIVASSTLLQRLPPTDYILSHS 134

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + LK+ D ++++E    L    Y   D     G F V G  I+++P      A+R+ +F 
Sbjct: 135 LVLKVNDQLDREEFRHHLTNSGYTSVDTVYQHGEFAVRGALIDVYPM-GSRAAYRIELFD 193

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           + ++ + EF P T + I  VE+I++     +   +      +   K              
Sbjct: 194 DSVDSLREFDPETQRTITQVESIELLPGKEFPFDK----AGINAFKS------------- 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           R  E   ++       + + +  S   +E Y          +   TLF+Y+ +     + 
Sbjct: 237 RWYETFDVDHSACPVFQDISSGLSPAGVEYYLPLFF-----DETATLFDYLADAPEKTLL 291

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFR----LPSCMDNRPLRFEEWNCLRPTTIVVSA 530
             H  +PQ    +  D   +  L+  G R    LP+     P+    ++ ++P   V   
Sbjct: 292 FVHEKVPQAIENHWKDIESRY-LSRNGDRERPILPTHRAFHPVN-ALYSAMKPYPRVTLY 349

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
                E +    +++           P + + S       + +       +  R+L    
Sbjct: 350 NQSIVEGKGSDNLMLS--------TSPALSVDSKANNPLHLLESFLNRTDK--RVLFCAE 399

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           +    E L E L +  +R           E    +      +  + + +  L   ++  +
Sbjct: 400 SSGRKETLKEQLKKIGVR----------PEESTSVFSFLESQQKIAITVAQLDNTVNCQQ 449

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            G + I +    G      + +Q   R ++N    
Sbjct: 450 PGFILIAEQQLFG------NRVQQRRRRSKNAEDP 478



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 72/181 (39%), Gaps = 17/181 (9%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     GI    II   P   +     +R +   +  + + I     +
Sbjct: 762 ILTLTATPIPRTLNMSMNGIRDLSIIATPPAKRLSVKTFVRESDDNL--IKEAILREILR 819

Query: 582 GLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           G ++      +  + +R  E +   + E  I +   H +++  E   ++ D    +F++L
Sbjct: 820 GGQVYFLHNEVKSIDRRAQE-IQALVPEARIGIG--HGQMRERELESVMSDFYHKRFNIL 876

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K+
Sbjct: 877 VSTTIIETGIDVPTANTIVIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLMTPNKKA 932

Query: 697 I 697
           +
Sbjct: 933 M 933


>gi|262198049|ref|YP_003269258.1| transcription-repair coupling factor [Haliangium ochraceum DSM
           14365]
 gi|262081396|gb|ACY17365.1| transcription-repair coupling factor [Haliangium ochraceum DSM
           14365]
          Length = 1257

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 126/358 (35%), Gaps = 35/358 (9%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR---PAIVMAPNKILAAQLYS 211
            AI  +   +   +   +  G+T +      A++ E       P +V+AP++  A  L  
Sbjct: 8   EAIRAV---LSETDAPVIAHGLTRASLALVAARLAERADERAGPVVVVAPDESSARDLAQ 64

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN- 270
           +   F PH       +      P  ++P  DT    E S +      R +    L     
Sbjct: 65  DVAFFLPHAQHAAAGTEPLAPPPALHLPALDTSPYAELSPDRLALAQRMAGLVRLARGGA 124

Query: 271 ---DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
                +V+S+ + +  +   E+       L   D  ++      L++  Y R  +    G
Sbjct: 125 LLGPVVVLSAPALLRRVMPREALLARTAVLARDDEFDRDATAERLLRAGYTRAPVVEDAG 184

Query: 328 TFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           TF V G  I++F P +      R+ +FG+ +E I  F P + + +R+++ + ++     V
Sbjct: 185 TFAVRGGVIDVFTPLYR--YPARIELFGDMVESIRLFDPESQRTLRDLDQVYVHPVRETV 242

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRL--LEAQRLEQRITYDLEMLE-TTGSCQSIE 443
                          E++ R+++          E +R+ +RI    E +   T +     
Sbjct: 243 VSEG----------AEVRRRILDAADAAHHPSAETRRVLERIDSGEEFVGIETLTPAFHT 292

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           + +   +    G+ PP         +   + +           +     R     + G
Sbjct: 293 HLAPLASYLVAGDAPP---------ACWVIVDPDAIGQAAEDEHDVAEDRYRERLDDG 341



 Score = 45.1 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 71/230 (30%), Gaps = 48/230 (20%)

Query: 516  EEWNCLRPT--TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--V 571
            E    +R     + ++ATP    L      + +  I  T   D    +R+   QV+D  +
Sbjct: 826  ERLKRVRTQLDVLTLTATPIPRTLHLAMSGLRDLSIIATPPADRRA-VRTFVAQVDDGVL 884

Query: 572  YDEINLAAQQGLRILLTVLTK---------------------------------RMAEDL 598
             + I     +G ++                                          AE L
Sbjct: 885  REGIRRELGRGGQVFFVCPRIGADPAPSKGKVKGKGKSQGETARRVRRGDISLDEWAEHL 944

Query: 599  TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
               + E  + V   H ++      +++ D   G  ++LV   ++  GLDI     + +  
Sbjct: 945  RALVPEARVAVA--HGQMSAEALEKVMIDFVSGNLEILVSTTIVESGLDIARANTMFVDR 1002

Query: 659  ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
            AD  G  +    L Q  GR  R+             + +        RRR
Sbjct: 1003 ADSFGLAQ----LYQLRGRIGRSKQRAFCYLLVPPPEKLSS----DARRR 1044


>gi|91225270|ref|ZP_01260438.1| transcription-repair coupling factor [Vibrio alginolyticus 12G01]
 gi|91189909|gb|EAS76181.1| transcription-repair coupling factor [Vibrio alginolyticus 12G01]
          Length = 1153

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 95/531 (17%), Positives = 200/531 (37%), Gaps = 77/531 (14%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
              +K Q L  + G+     +A++ +     ++++ P+  +A +L +E    F    V  
Sbjct: 14  ERGDKKQ-LGNLPGAALPLAIAELAKQHSSHSLLVVPDPQIALKLQAEI-EQFTDQTVSL 71

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
           F  + +    + + P  +        I+E+I R+     +   +R+   +V   + +   
Sbjct: 72  FPDW-ETLPYDNFSPHQEI-------ISERIARL----YQLPSQRDGITIVPVSTVLQRQ 119

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
              +   Q  + +K GD +  ++L   L    Y+  D     G +   G  +++FP    
Sbjct: 120 SPRDFLLQHTLMVKTGDRLSLEKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSN 179

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           D  +R+  F ++I+ I  F P   + I +++ I++     + T +     A++  +   +
Sbjct: 180 D-PYRIDFFDDEIDTIRTFDPENQRSIDDIQQIQLLPAHEFPTTKE----AIEDFRTRWR 234

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            +           E + +  ++T              IE +          +   TLFEY
Sbjct: 235 TQ------FDARREPESIYMQVTK-------GTWPAGIEYWQPLFF-----DHTETLFEY 276

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
            PEDS +    ++  I      +  D        EY +        RPL       L P 
Sbjct: 277 FPEDSQVI---TYGDIESAVDTFLTD-------VEYRYDQKKVDPLRPL-------LTPE 319

Query: 525 TIVVSATPGSWELEQ--CQGIIVEQIIRPTGLVDPPVEIRSART---QVEDVYDEINLAA 579
            + +       +L+Q     + ++++++  G  + PV+  +      Q ++    +   +
Sbjct: 320 QLWLKKDELFSQLKQLPIAQLSLDKVVKRAGRQNLPVQSLAELGVQQQNKEPLSRLRQFS 379

Query: 580 QQ-GLRILLTVLTKRMAEDLTEYLYERNIRVR-YMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +Q   +I+ +V ++   E LTE L  + I+VR  +H  +           L  G    L+
Sbjct: 380 EQFSGKIVFSVESEGRREALTELL--QGIKVRPVVHGSLYQ--------ALDSGDRFSLI 429

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
                  G    E     I ++D  G       +IQ   +  + VNS  ++
Sbjct: 430 L-GAAEHGFIHEELNFALICESDLLG-----DRVIQRRRKDKKAVNSDTVI 474



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 73/185 (39%), Gaps = 12/185 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         ++    + +   V + +     +G 
Sbjct: 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQKEEPVVREAVLREIMRGG 813

Query: 584 RILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T  + AEDL + + E  I V   H +++  E   I+ D    +F+VLV  
Sbjct: 814 QVYFLHNQVETIEKTAEDLQKLIPEARITVA--HGQMRERELERIMNDFYHQRFNVLVCT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K++  
Sbjct: 872 TIIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAMTK 927

Query: 700 -AIDE 703
            AI  
Sbjct: 928 DAIKR 932


>gi|302551963|ref|ZP_07304305.1| transcription-repair coupling factor [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469581|gb|EFL32674.1| transcription-repair coupling factor [Streptomyces
           viridochromogenes DSM 40736]
          Length = 1177

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 118/333 (35%), Gaps = 43/333 (12%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
              ++ + L    + + F +A +     RP + +      A  L +  ++  P   V  +
Sbjct: 25  DGNRMHVDLVGPPAARPFAVAGLARDTGRPVLAVTATGREAEDLAAALRSLLPPEEVVEY 84

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI---- 281
            S+ +    E   PR+DT   + +     + R+ H            +VV+ V  +    
Sbjct: 85  PSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPRPDDPETGPVSVVVAPVRSVLQPQ 139

Query: 282 -YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
             G+G +E        L+ G S + +E++ +L    Y R ++   RG F V G  +++FP
Sbjct: 140 VKGLGDLEPV-----SLRTGQSADLEEIVDALAAAAYARVELVEKRGEFAVRGGILDVFP 194

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTPRPTLNTAMKYI 399
              E+   RV  +G+D+EEI  F     + +   E  +        +        A    
Sbjct: 195 P-TEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELLLTEDVRARA---- 249

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
              L  +  EL +                 L  +    + + +E+ +  L          
Sbjct: 250 -RALAEQHPELGE----------------LLGKIAEGIAVEGMESLAPVLVDDMEL---- 288

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
            L + +P+ ++  V +      + S +      
Sbjct: 289 -LLDVLPKGAMAVVCDPERVRTRASDLVATSQE 320



 Score = 38.9 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 65/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + +  PP E     T V     + +   I    
Sbjct: 777 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEEKQIGAAIRREL 832

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 833 LREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLV 892

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R        +     K  
Sbjct: 893 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRERGYAYFLYPPEKP- 947

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 948 ---LTETAHERLATIAQHTEMG 966


>gi|282866318|ref|ZP_06275364.1| transcription-repair coupling factor [Streptomyces sp. ACTE]
 gi|282558904|gb|EFB64460.1| transcription-repair coupling factor [Streptomyces sp. ACTE]
          Length = 1176

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 120/344 (34%), Gaps = 43/344 (12%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+A+ +K      +  + L    + + F +A +     R  + +      A  L +  +
Sbjct: 14  PALAEAVKAATDGHRSHVDLVGPPAARPFAVAALAREAGRTVLAVTATGREAEDLAAALR 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
              P + +  F S+ +    E   PR+DT   + +     + R+ H            +V
Sbjct: 74  TLLPPDTIAEFPSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPRADDPETGPVGVV 128

Query: 275 VSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           V+ +  +      G+G +E  +     L  G + +  E++ +L    Y R ++   RG F
Sbjct: 129 VAPIRSVLQPQVKGLGDLEPVA-----LSSGQTADLGEVVDALAAAAYARVELVEKRGEF 183

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTP 388
            V G  +++FP   E+   RV  +G+D+EEI  F     + +      +        +  
Sbjct: 184 AVRGGILDVFPP-TEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAAHGLWAPPCRELLLT 242

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
               N A       L     EL +                 L  +    + + +E+ +  
Sbjct: 243 EDVRNRA-----AALAEAHPELGE----------------LLGKIAEGIAVEGMESLAPV 281

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           L           L + +P+ S+  V +      + + +      
Sbjct: 282 LVDEMEL-----LLDVLPKGSMALVCDPERVRTRAADLVATSQE 320



 Score = 38.9 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 69/202 (34%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD-EINLAAQQGL 583
            + +SATP    LE     I E     + +  PP E     T V    + +I  A ++ L
Sbjct: 777 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEEKQIGAAVRREL 832

Query: 584 ----RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
               ++          +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 833 LREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMGEGALEQVVVDFWEKKFDVLV 892

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R  +     +     K  
Sbjct: 893 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRDRGYAYFLYPPEKP- 947

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 948 ---LTETAHERLATIAQHTEMG 966


>gi|145222538|ref|YP_001133216.1| transcription-repair coupling factor [Mycobacterium gilvum PYR-GCK]
 gi|145215024|gb|ABP44428.1| transcription-repair coupling factor [Mycobacterium gilvum PYR-GCK]
          Length = 1198

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 87/492 (17%), Positives = 164/492 (33%), Gaps = 53/492 (10%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           S + F  + + +A     +V+      A  L +E +  F   AV  F S+ +    E   
Sbjct: 47  SARLFVASALAQAGL--LLVVTATGREADDLTAELRGVFGD-AVAMFPSW-ETLPHERLS 102

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLK 298
           P  DT   +       + R+       L E    +V ++ S +  +   +      V L 
Sbjct: 103 PGVDTVGARMM----LLRRLAFPDDARLGEPLRVVVTTARSLLQPMA-PDLARIDPVTLT 157

Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358
           +G   +  E ++ LV   Y R D+   RG F V G  +++FP   E    RV  +G++I 
Sbjct: 158 VGGEADFDETVARLVDLAYTRVDMVGKRGEFAVRGGILDLFPPTAE-HPVRVEFWGDEIS 216

Query: 359 EISEFYPLTGQKIR--NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           E+  F     + I    ++T+        +        A    +E               
Sbjct: 217 EMRMFSVADQRSIPEIEIDTVIAVPCRELLLTADVRERAAALAEE-------------HP 263

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           +    +   +   L  L        +E     L   +      TL +++PE + L V + 
Sbjct: 264 VSENNVPGSVPDMLARLAEGIPVDGMEALLPLLRPSDF----ATLPDHLPEGTPLLVCDP 319

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536
                + + + +          E  +   +   + P+  E             A   + +
Sbjct: 320 EKVRTRAADLIKTGRE----FLEASWSTAAVGGDVPIDLEALGA-SGYVTYNEARDAARD 374

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRS---ARTQ--VEDVYDEINLAAQQGLRILLTVLT 591
                   + Q+    G     ++IR    AR Q  +E+++  +      G   ++    
Sbjct: 375 GGH-GWWTLSQLDSGAG-ESTALDIRPAPSARGQHNLEEIFAMLRAHVATGGCGVVVTPG 432

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
               + + E L E +     +   +            + G   VL G   L +G+ IP  
Sbjct: 433 AGTCQRVVEQLSESDTPAMILEPGMAP----------KDGVVGVLKGP--LHDGVVIPGA 480

Query: 652 GLVAILDADKEG 663
            LV I + D  G
Sbjct: 481 NLVVITETDLTG 492



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQVEDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E         Q +D      L  + 
Sbjct: 794 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGQHDDKQVAAALRREM 849

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +        R  +     + +     R +  H ++   +  + +      ++D+LV
Sbjct: 850 LRDGQAFYIHNRVRTIDSAAAKIRQLVPEARVVVAHGQMPEEQLEKTVEGFWNREYDILV 909

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +        
Sbjct: 910 CTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPPEVP- 964

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N +  
Sbjct: 965 ---LTETAYDRLATIAQNNELG 983


>gi|311279979|ref|YP_003942210.1| transcription-repair coupling factor [Enterobacter cloacae SCF1]
 gi|308749174|gb|ADO48926.1| transcription-repair coupling factor [Enterobacter cloacae SCF1]
          Length = 1148

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 54/311 (17%), Positives = 118/311 (37%), Gaps = 36/311 (11%)

Query: 163 GIHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
            + ++   Q LLG +TG+     +A+++E  + P +++ P+   A +LY E +  F    
Sbjct: 8   ALPTKPGEQRLLGELTGAACATEVAEIVERHRGPVVLVTPDMQNALRLYDEIRQ-FTDQM 66

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
           V     + +    +++ P  +    + S++ +     R             ++V   + +
Sbjct: 67  VMSLADW-ETLPYDSFSPHQEIISSRLSTLYQLPAMQR-----------GVLIVPVNTLM 114

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +          + +K G  + +  L + L    Y+  D  +  G +   G  +++FP 
Sbjct: 115 QRVCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPM 174

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E   +R+  F ++I+ +  F   T + +  VE I +     +    PT  TA++  + 
Sbjct: 175 GSE-QPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKTAIELFRS 229

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + + R                     +  + +        IE +          EP P L
Sbjct: 230 QWRDRFDVKRDA-------------EHIYQQVSKGTLPTGIEYWQPLFFS----EPLPAL 272

Query: 462 FEYIPEDSLLF 472
           F Y P ++L+ 
Sbjct: 273 FSYFPANTLIV 283



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + +     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAMLREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ A+ L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAADRLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|328882973|emb|CCA56212.1| Transcription-repair coupling factor [Streptomyces venezuelae ATCC
           10712]
          Length = 1221

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 108/311 (34%), Gaps = 43/311 (13%)

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           +     RP + +      A  L +  ++    + V  + S+ +    E   PR+DT   +
Sbjct: 89  LARDSGRPVLAVTATGREAEDLAAALRSLLDPDTVVEYPSW-ETLPHERLSPRSDTVGRR 147

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-----YGIGSVESYSQMIVQLKIGDS 302
            +     + R+ H            +VV+ +  +      G+G +E  +     L+ G +
Sbjct: 148 LAV----LRRLAHPRDDDPAAGPVSVVVAPIRSVLQPQVKGLGDLEPVA-----LRSGQT 198

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
            +  E++  L    Y R ++   RG F V G  +++FP   E+   R+  +G+D+EEI  
Sbjct: 199 ADLNEIVEGLAAAAYARVELVEKRGEFAVRGGILDVFPP-TEEHPLRIEFWGDDVEEIRY 257

Query: 363 FYPLTGQKIRNVET-IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
           F     + +   E  +        +        A       L  +  EL +         
Sbjct: 258 FKVADQRSLEVAEHGLWAPPCRELLLTEDVRQRA-----AALAEQHPELGE--------- 303

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
                   L  +    + + +E+ +  L           L + +P+ S+  V +      
Sbjct: 304 -------LLNKIAEGIAVEGMESLAPVLVDDMEL-----LLDVLPKGSMAVVCDPERVRT 351

Query: 482 QISGMYRGDFH 492
           + S +      
Sbjct: 352 RASDLVATSQE 362



 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 65/202 (32%), Gaps = 19/202 (9%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
             + +SATP    LE     I E     + +  PP E     T V     + +   I    
Sbjct: 822  VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEEKQIGAAIRREL 877

Query: 580  QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +  ++          +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 878  LREGQVFYIHNRVDSIDRAAARLREIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLV 937

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  G+DI     + +   D  G  +    L Q  GR  R        +     K  
Sbjct: 938  STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRERGYAYFLYPPEKP- 992

Query: 698  QLAIDETTRRREKQLEHNKKHN 719
               + ET   R   +  + +  
Sbjct: 993  ---LTETAHERLATIAQHTEMG 1011


>gi|239787601|emb|CAX84069.1| Transcription-repair coupling factor [uncultured bacterium]
          Length = 1178

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 85/531 (16%), Positives = 157/531 (29%), Gaps = 90/531 (16%)

Query: 165 HSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           H R     +LG + G+  ++   ++      P +V+      A  LY E           
Sbjct: 14  HRRGPPHPVLGNLPGAALSWMAVELSCHATGPVVVITGTTTRAESLYREM---------L 64

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN------------- 270
           +F  +         +P  +T   +  S    I   R  A   L +               
Sbjct: 65  FFADHRSPPLTLLPLPAWETLPFERLSPYGPIMGERIRALFRLTQTAGSGPVTAGDAEGH 124

Query: 271 --DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
               ++ +  + +      +  +   + +  GD +    L   L    Y+        G 
Sbjct: 125 ALTTLITTPAALMRRTVPHQYLATHGLSVSKGDQLNIAALRHFLSSAGYRNATQVEEPGE 184

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           + + G  ++ FP   +D   R+ +FG+++E +  F P+T +    +++++    S  +  
Sbjct: 185 YAIRGGIVDFFPPGHDD-PVRLELFGDEVETLRLFDPVTQRSTDRIQSVQALPVSEVILT 243

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
             T+             R    +  G       L        + L        +E Y  +
Sbjct: 244 EETIRDF----------RSGFRQTHGIGASEDEL-------YKQLSRGEKSPGMEQYLPF 286

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS-- 506
                  +   T+F+Y+P ++L  +D     + +          R+A L       P   
Sbjct: 287 FY-----QSAETVFDYLPPETLFLLDTD--ALAEARRFDDEVRERRANLETESQPDPHRP 339

Query: 507 --------------CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
                            NR   F       P  I +   P    L        E  I P 
Sbjct: 340 PPPLELYLPEEEFHQQLNRFSVFATAPQAAPGGISMGFDPAPNFLNLTAREPDEPPIPPL 399

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
            L                  D I  A  QG ++ +   +    E L E L +  I     
Sbjct: 400 DLAS----------------DAIRQAHAQGFKVCIAAASMGQRERLRELLEDHKIPTA-- 441

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                T+     +  +  G    L  +  L  G      GLV + D+   G
Sbjct: 442 -----TVSFWHELFAVAPGSTTFL-AVGDLESGFIHGRMGLVLLTDSAIFG 486



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 13/193 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQG 582
            + ++ATP    L      + +  I  T  ++    IR+   Q +   V + +     +G
Sbjct: 781 ILTLTATPIPRTLHLAMSGLRDISIIATPPINRLA-IRTFVLQYDRQKVREAVLREIYRG 839

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +  + +   L E     R    H +++     +I+      +F++L+   
Sbjct: 840 GQVFFVHNHVQDIDKMAVELTELVPEARIGVAHGQMREGRLEKIMLSFYRQEFNLLLCTT 899

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+DIP    + I  AD+ G  +    L Q  GR  R+ +                 
Sbjct: 900 IIENGVDIPTANTIIIHRADRFGLAQ----LHQLRGRVGRSKHRAYAYLFIPHP----QT 951

Query: 701 IDETTRRREKQLE 713
           + E   RR + +E
Sbjct: 952 LSEDALRRLEAIE 964


>gi|299136367|ref|ZP_07029551.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX8]
 gi|298602491|gb|EFI58645.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX8]
          Length = 1301

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 73/473 (15%), Positives = 161/473 (34%), Gaps = 61/473 (12%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           AA  +  + +      + + G+T + +   +   + A Q PA+V+  +   A  L++   
Sbjct: 17  AAFERARRHLAGGTGRRRVSGLTATARALYLPYFVRASQAPALVIVSDNKAAEALHAAVL 76

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
                  V          +    +P  D    +  S + +I   R +A   L      +V
Sbjct: 77  AACELTGVL-------AVEEVLRLPAHDVLPFENLSPHPEIQEQRAAALWKLASGAAKLV 129

Query: 275 VSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           ++ V  +   + + + Y+ + + L+ G+    + L+  LV   Y R D+  + G   V G
Sbjct: 130 IAPVEAVCMKLFARDFYAALALTLRTGEEHIPEMLIEHLVSVGYTRVDVVEMPGQVTVRG 189

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++++   +E    R+  FG++IE +  F P T +    ++ I +   +        L 
Sbjct: 190 GILDVYGPEME-RPVRIDFFGDEIESMRRFDPDTQRSSSALDEILLLPLTETPVT-EKLL 247

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
           TA+       ++          L   +   + +T+              E Y+     + 
Sbjct: 248 TAINA-----RLTRSGTAAGAELEGGETPNELVTHVATRTGEATIFPGWEFYAAVAGAK- 301

Query: 454 PGEPPPTLFEYIPEDSL----LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
                 +L + +   S     +F++E  +   Q    +     R                
Sbjct: 302 -----SSLLDLMGAPSANGPRVFIEEPSMVDNQGERWWNKVEQR---------------H 341

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELE---------QCQGIIVEQIIRPTGLVDPPVE 560
           +R       + +RP  + +S     WEL+         +   I +  ++         +E
Sbjct: 342 DRA---GIGSLVRPEDLYLS----PWELQDRVRAYSGCELDQIGIVDVLDADRSDASEIE 394

Query: 561 I--RSAR---TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
              R        +  + D++    +   R+L+    +   E L   L E  + 
Sbjct: 395 FATRPTMRFHGSIPALVDQLKSLMENEARVLIAAANQGEVERLAGLLQEYGVP 447



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 70/188 (37%), Gaps = 13/188 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + +SATP    L      + +  +  T   D    I++   + ++  +   + +  ++G
Sbjct: 811 VLSMSATPIPRTLNMSLVGLRDMSVIETPPKDRMA-IQTVVAKFDEKLIRTAVEVELERG 869

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            +            +L   + E   + R +  H ++   E   ++     G++DVL   +
Sbjct: 870 GQTYFVHNRVETIYELASMIRELVPQARVVVGHGQMPEAELERVMLAFMDGEYDVLCATS 929

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  GLDI +   + I  AD+ G       L Q  GR  R+             +     
Sbjct: 930 IIENGLDISKANTIIINRADRHGLSE----LYQLRGRVGRSNRRAYAYLLIPPEQQ---- 981

Query: 701 IDETTRRR 708
           + E  RRR
Sbjct: 982 LTEIARRR 989


>gi|153854681|ref|ZP_01995931.1| hypothetical protein DORLON_01929 [Dorea longicatena DSM 13814]
 gi|149752785|gb|EDM62716.1| hypothetical protein DORLON_01929 [Dorea longicatena DSM 13814]
          Length = 1126

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 81/512 (15%), Positives = 172/512 (33%), Gaps = 107/512 (20%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A   +L K       +  + G   S K+  M  + +  +    +   ++  A Q+Y E++
Sbjct: 12  AEFEELCKNKKKDVGMIRVCGCVNSQKSHMMYALGDGCKYKV-IACSSETKAKQIYEEYR 70

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
               +                   P  D    +    ++++ + R    +++L      V
Sbjct: 71  FLDSN---------------TYLYPAKDFLFYQADIRSKELVKQRMEGIQAVLSGEPVTV 115

Query: 275 VSSVSC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S+   +  +   ES ++ +++++    ++  E+   L    Y R+      G F V G
Sbjct: 116 VTSLDGFMDHLAPKESIAEKVLKVQNDSVLKLDEMAEKLSVIGYDREVQVEGPGQFAVRG 175

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++I+                         PLT                          
Sbjct: 176 GILDIY-------------------------PLT-------------------------- 184

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                  EEL +R+         L    ++   T+D+E   +  +   I  Y   +    
Sbjct: 185 -------EELPVRIE--------LWGDEVDSIRTFDVESQRSIENLMDIVIY-PAVEFPQ 228

Query: 454 PGEPPPTLFEYIP-EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
            GE   +  +Y P ED++LF+DE    + +   +       +    E G+ L    +   
Sbjct: 229 NGEKGVSFLDYFPPEDTILFLDEPVRLVERGQNIEDEFMEAQKKRLESGYDL---EEEEA 285

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELE-QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
             F     L+      S   G + L  +C+G+ V +             +       E +
Sbjct: 286 KIFPVTEILKKINCYSSI--GFYALGMKCKGLEVRESYEIQAKS-----VNPYNNSFEML 338

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             ++    + G R++L   ++  A+ L E L + N+   Y           ++ R+++ G
Sbjct: 339 TQDLKRLKRNGYRVILLSGSRTRAKRLAEDLRDYNLSSYY---------SEDLDREVKPG 389

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +  ++     + EG + P      I ++D  G
Sbjct: 390 E--IMTAYGYIAEGYEYPMLKFTVIAESDIFG 419



 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP-PVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      I +  +      D  P++        E V + I     +  
Sbjct: 715 VLTLTATPIPRTLHMSLIGIRDMSVLEEAPNDRMPIQTYVMEYNDEMVREAIERECARQG 774

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++  ++ +   ++ V Y H +++  E   I+ D   G+ DVLV   +
Sbjct: 775 QVYYVYNRVEDIDEVAGHVQKLVPDLTVAYAHGQMREHELERIMYDFINGEIDVLVSTTI 834

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-- 699
           +  GLDI     + I DAD+ G L     L   +GR+ R   + ++   D + K +    
Sbjct: 835 IETGLDISNANTMIIHDADRLG-LSQLYQLRGRVGRSNRMAYAFLLYRRDKMLKEVAEKR 893

Query: 700 --AIDE 703
             AI E
Sbjct: 894 LAAIRE 899


>gi|293396556|ref|ZP_06640832.1| transcription-repair coupling factor [Serratia odorifera DSM 4582]
 gi|291420820|gb|EFE94073.1| transcription-repair coupling factor [Serratia odorifera DSM 4582]
          Length = 1159

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 121/297 (40%), Gaps = 35/297 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE    P +++AP+   A +L  E +  F    V    S ++    +
Sbjct: 32  LTGSACAVECAEIIERHNGPVMLIAPDMQNALRLRDEIQQ-FTDQMVSTL-SDWETLPYD 89

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           ++ P  +    + SS       + H  T +       I++   + +  +   E      +
Sbjct: 90  SFSPHQEIISARLSS-------LYHLPTMA----RGVIILPVNTLMQRVCPHEFLHGHAL 138

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            ++ G  + + +L + L +  Y+  D  +  G F   G  ++++P   E+  +R+  F +
Sbjct: 139 VMQKGQRLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEE-PYRIDFFDD 197

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ +  F   + + +  VE I +     +    PT   A++  + + + +         
Sbjct: 198 EIDSLRIFDVDSQRTLSEVEAINLLPAHEF----PTDKNAIELFRSQWREQ--------- 244

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             E +R  + I    + +        IE +          +P P+LF Y+P+++L+ 
Sbjct: 245 -FEVRRDAEHI---YQQVSKGTWPAGIEYWQPLFFS----QPLPSLFSYLPDNTLIV 293



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 761 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREVLR 818

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          +   + L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 819 GGQVYYLYNDVENIDKAAQRLAELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 878

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD+ G  +    L Q  GR  R+ +           K++
Sbjct: 879 TIIETGIDIPSANTIIIERADRFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 932


>gi|254522423|ref|ZP_05134478.1| transcription-repair coupling factor [Stenotrophomonas sp. SKA14]
 gi|219720014|gb|EED38539.1| transcription-repair coupling factor [Stenotrophomonas sp. SKA14]
          Length = 1154

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 109/334 (32%), Gaps = 35/334 (10%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            + +   + +A+   A   P +V+A +   A QL ++       +             P 
Sbjct: 25  ASPTALAWYLAQAARAHDAPLLVIARDNHGANQLEADLHTLLGGDPAL----------PV 74

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMI 294
              P  +T      S +  I   R +A   L      +V+  V   +  +          
Sbjct: 75  VAFPDWETLPYDRFSPHPDIISQRLAALHRLPALKRGLVIVPVQTLLQQLAPRSYVIGGS 134

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             LK+G  ++ +     L    Y+     +  G F V G  +++FP   ++   RV +  
Sbjct: 135 FDLKVGQRLDLEAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPMGADE-PLRVELLD 193

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
            DI+ I  F P + + +  VE + +           ++   +      L+ R        
Sbjct: 194 EDIDSIRAFDPESQRSLDKVEAVHMLPGREVPMDEASIARVLAT----LRERFD------ 243

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFV 473
                  ++ R +   + L++  +   +E Y          E   TLF+Y+P  S  +  
Sbjct: 244 -------VDTRRSALYQDLKSGLAPAGVEYYLPLFF-----ERTATLFDYLPSGSLPVVC 291

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
             +              + ++    E     PS 
Sbjct: 292 AGAGEAAETFWAQTGERYEQRRHDVERPLLPPSA 325



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  +L+E + E  I +   H ++   E  +++ D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRELSELVPEARIGIA--HGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +SI
Sbjct: 890 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVAPDRRSI 930


>gi|225734143|pdb|3FPN|B Chain B, Crystal Structure Of Uvra-Uvrb Interaction Domains
          Length = 106

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 45/104 (43%), Positives = 64/104 (61%)

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +GS E Y +++V L++G  +E+  LL  LV  QY R DI   RGTFRV GD +EIFP+ 
Sbjct: 3   HMGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRNDIDFRRGTFRVRGDVVEIFPAS 62

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
            ++   RV  FG++IE I E   LTG+ +   E + I+  SH+V
Sbjct: 63  RDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIFPASHFV 106


>gi|159036485|ref|YP_001535738.1| transcription-repair coupling factor [Salinispora arenicola
           CNS-205]
 gi|157915320|gb|ABV96747.1| transcription-repair coupling factor [Salinispora arenicola
           CNS-205]
          Length = 1218

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 111/326 (34%), Gaps = 51/326 (15%)

Query: 181 KTFTMAKVIEA-----MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + F +A +          RP + +      A  L +      P + V  F S+ +    E
Sbjct: 41  RPFAVAAIAADEPVGGAGRPVLAVTATTREADDLAAALGCLIPADQVAVFPSW-ETLPHE 99

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC--IVVSSVSCI-----YGIGSVE 288
              PR+DT   + +     + R+ H        R+    ++V+ V  +      G+G +E
Sbjct: 100 RLSPRSDTVGRRLAV----LRRLAHPDAADSQGRHGPLRVIVAPVRSLLQPQLKGLGELE 155

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   L  GD  + ++L   L    Y R D+   RG F V G  +++FP   ++   
Sbjct: 156 PVR-----LAAGDEADLEDLARRLTDLAYARVDLVTKRGEFAVRGGILDVFPP-TDEHPA 209

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE--ELKMR 406
           RV  +G+++EEI  F     + I  V  +        +        A     +  EL   
Sbjct: 210 RVEFWGDEVEEIRTFAVADQRTIEGVGQLWAPPCRELLLTPAVRKRAAALAVDHPELAEI 269

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L +L                             + +E+ +  L G +  E    L + +P
Sbjct: 270 LDKLA-----------------------EGIPVEGMESLAPVLIGADSMEL---LLDTMP 303

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFH 492
             + + + +      +   + R    
Sbjct: 304 AGTHVLLCDPERIRTRAHDLVRTSAE 329



 Score = 45.9 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 50/149 (33%), Gaps = 11/149 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     T    PP E     T V       V   I+   
Sbjct: 808 VLSMSATPIPRTLEMAITGIREMSTIAT----PPEERHPVLTAVGAYDERQVAAAIHREL 863

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     L E     R    H ++       ++      +FDVLV
Sbjct: 864 LRDGQVFYLHNRVESIERAARRLRELVPEARVAVAHGQLGEEALERVMVGFWEKQFDVLV 923

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLR 666
              ++  G+DIP    + +  AD  G  +
Sbjct: 924 CTTIVESGIDIPNANTLIVERADLLGLAQ 952


>gi|29830092|ref|NP_824726.1| transcriptional-repair coupling factor [Streptomyces avermitilis
           MA-4680]
 gi|29607202|dbj|BAC71261.1| putative transcriptional-repair coupling factor [Streptomyces
           avermitilis MA-4680]
          Length = 1176

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 108/276 (39%), Gaps = 19/276 (6%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
              ++ + L    + + FT+A +     R  + +      A  L +  ++  P + V  +
Sbjct: 25  DGNRMHVDLVGPPAARPFTVAALARDTGRTVLAVTATGREAEDLAAALRSLLPPDRVVEY 84

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI---- 281
            S+ +    E   PR+DT   + +     + R+ H            +VV+ +  +    
Sbjct: 85  PSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPRADDPETGPVSVVVAPIRSVLQPQ 139

Query: 282 -YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
             G+G +E  +     L+ G + +   ++ +L    Y R ++   RG F V G  +++FP
Sbjct: 140 VKGLGDLEPVA-----LRTGQTADLGTIVEALSAAAYARVELVEKRGEFAVRGGILDVFP 194

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTPRPTLNTAMKYI 399
              E+   RV  +G+D+EEI  F     + +   E  +        +        A    
Sbjct: 195 P-TEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELLLTDDVRERAAALA 253

Query: 400 KE--ELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           +   EL   L ++ +   +   + L   +  D+E+L
Sbjct: 254 EAHPELGELLGKIAEGIAVEGMESLAPVLVDDMELL 289



 Score = 38.5 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 68/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD-EINLAAQQGL 583
            + +SATP    LE     I E     + +  PP E     T V    + +I  A ++ L
Sbjct: 777 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEERQIGAAIRREL 832

Query: 584 ----RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
               ++          +     L E     R    H ++      +++ D    K+DVLV
Sbjct: 833 LREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSEQTLEQVVVDFWEKKYDVLV 892

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R        +     K  
Sbjct: 893 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRERGYAYFLYPPEKP- 947

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 948 ---LTETAHERLATIAQHTEMG 966


>gi|301156034|emb|CBW15505.1| transcription-repair coupling factor [Haemophilus parainfluenzae
           T3T1]
          Length = 1149

 Score =  141 bits (354), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 89/522 (17%), Positives = 183/522 (35%), Gaps = 69/522 (13%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V  S     ++++ E      +V+ P+   A +L        P    
Sbjct: 14  IPTQPNDHKILGNVLASADALAVSEIAEQYDGLTVVVTPDTKSAVRL----SQVLPD--- 66

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                     QP  + P  +T      S +++I   R SA   L      I V  +S + 
Sbjct: 67  -------LTSQPVQFFPDWETLPYDFFSPHQEIISSRLSALFHLQNTKKGIFVLPISTLM 119

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K GD +  ++L   L    Y+  +  +  G + V G  +++FP 
Sbjct: 120 QRVCPPKYLQHNVLLIKKGDRLVIEKLRLQLESAGYRSVEQVLEHGEYAVRGSLLDLFPM 179

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  +++I +     +    PT    +++ + 
Sbjct: 180 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLDEIQSINLLPAHEF----PTDEKGIEFFRT 234

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +              TL
Sbjct: 235 QFRETFGEIRRDPEHIYQQ------------ISKGTLISGIEYWQPLFFDEM-----ATL 277

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
           F+Y+PE +L    E++    Q    Y     R                 RPL       L
Sbjct: 278 FDYLPEKTLFVDMETNQ--AQGERFYLDAKQRYEHR--------KVDPMRPLLPP--ERL 325

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
                 V+    ++     +   V   +R   L    + + + ++Q ++   ++    + 
Sbjct: 326 WLNIDAVNHALKNYPKINFKAEKVRSSVRQKNLAVSALPVLTIQSQQKEPLSQLRQFIEH 385

Query: 582 -GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
               +L +V T+   E L + L    I+           ++I+ + +    KF++ V   
Sbjct: 386 FKGNVLFSVETEGRRETLLDLLSALKIK----------PKQIKTLSEANQDKFNLWVS-- 433

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
            L +G  + E  L  I + +  G        +Q   R  R  
Sbjct: 434 RLEQGFILDEAKLAVITEHEILG------ERVQQRQRDKRKA 469



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 71/189 (37%), Gaps = 12/189 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      V I++   Q +D+   + I     +G
Sbjct: 756 ILTLTATPIPRTLNMAMNGIRDLSIIAT-PPARRVSIKTFVRQKDDLIIREAILREILRG 814

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++  E   ++ D    +++VLV   
Sbjct: 815 GQVYYLHNDVASIENTAEKLTALVPEARVVIGHGQMRERELERVMSDFYHQRYNVLVCST 874

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +   
Sbjct: 875 IIETGIDVPTANTIIIERADNFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKLMTK- 929

Query: 701 IDETTRRRE 709
             +  RR E
Sbjct: 930 --DAKRRLE 936


>gi|312864113|ref|ZP_07724348.1| transcription-repair coupling factor [Streptococcus vestibularis
           F0396]
 gi|311100345|gb|EFQ58553.1| transcription-repair coupling factor [Streptococcus vestibularis
           F0396]
          Length = 1066

 Score =  141 bits (354), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 128/325 (39%), Gaps = 30/325 (9%)

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           + + E Y    + L +G+  + + L   L    Y+R +  +  G F   GD ++I+    
Sbjct: 1   MPNPEVYKDSRIDLTLGEEHDLEALSKHLTHIGYQRVEQVLSPGEFSRRGDILDIYELTA 60

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E + +R+  FG++I+ I +F   + + + N++ + I      +  R     A    ++ L
Sbjct: 61  E-LPYRLEFFGDEIDGIRQFDSDSQKSLNNLDHVVISPADDIILTREDYQRA----EKAL 115

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           +  + + E   +            Y  E+L  T      ++  ++L+     +   TLF+
Sbjct: 116 ESAVSKAEGPHK-----------AYLEEVLSVTIDGYRHKDLRKFLSLFY--DKAYTLFD 162

Query: 464 YIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP 523
           Y+P+ + +FVD+    + +   +     +        G  L S ++     F+     +P
Sbjct: 163 YLPKGTPVFVDDFQKIVDRHGRLELEVANLLTEDLHQGKSL-SYLNYFVDSFKTLRNYQP 221

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            +   +   G   L+  +     Q             ++    Q   + DEI+   +   
Sbjct: 222 ASFFSNFHKGLGNLKFDKLYQFTQYP-----------MQEFFNQFPLLVDEIHRYTKNKA 270

Query: 584 RILLTVLTKRMAEDLTEYLYERNIR 608
            ++L V +++  + L E L E ++ 
Sbjct: 271 TVILQVGSEKQLKSLKETLEEYDLD 295



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 4/172 (2%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    II        PV+     T    + + I     +G 
Sbjct: 635 VLTLTATPIPRTLHMSMLGIRDLSIIETAPTNRYPVQTYVMETNPGLIREAILREMDRGG 694

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          +     L+E     R  ++H ++  +     + D   G +DVLV   +
Sbjct: 695 QIFYIYNRVETIDKKVSELHELVPEARIGFVHGQMSEVMLENTLLDFLNGDYDVLVATTI 754

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +  G+DI     + I +AD  G L +   L   +GR+ R   + ++   D +
Sbjct: 755 IETGIDISNVNTLFIENADHMG-LSTLYQLRGRVGRSNRIAYAYLMYRPDKV 805


>gi|257062106|ref|YP_003139994.1| transcription-repair coupling factor [Cyanothece sp. PCC 8802]
 gi|256592272|gb|ACV03159.1| transcription-repair coupling factor [Cyanothece sp. PCC 8802]
          Length = 1158

 Score =  141 bits (354), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 104/638 (16%), Positives = 205/638 (32%), Gaps = 95/638 (14%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +LL+ ++ +     L GV    K    + + +++    +V+      A +  ++ +   
Sbjct: 17  KELLEKLN-KTGSLGLKGVPRLPKGLVSSALAQSLDNNLLVICATLEEAGRWAAQLEMMG 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
             +   Y  S    Y  EA+ P ++    +             S   S  ++N   +V++
Sbjct: 76  WKSVNFYPTSEASPY--EAFNPESEMIWGQ---------MQVLSILNS--QQNGLAIVTT 122

Query: 278 VSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
              +       + +      L+IG +   +E+  +LV+  Y+R  +    G +   GD +
Sbjct: 123 EKALQPHLPPSTVFETYCFNLQIGITKTSQEIDETLVRLGYERVALVETEGQWSRRGDIV 182

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IFP   E +  R+  FG+++E+I E  P T + +  +E + +   S       TL    
Sbjct: 183 DIFPVSSE-LPIRLEWFGDELEKIRELDPATQRSLDKLEQVILTPTSFNPIIANTLKNKN 241

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
             ++  L                           E  E   +    E  +R L      E
Sbjct: 242 INLQNYLSD-------------------------EEKEGLDNANFPEGMARLLGI--AFE 274

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGM--YRGDFHRKATLAEYGFRLPSCMDNRPLR 514
            P +L +Y+ E++L   DE             Y  D        E    LP    +RP  
Sbjct: 275 QPASLLDYLRENTLCVFDEVEQCQSHSDRWLDYVED-----NWQELDPPLPKI--HRPFS 327

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI----RSARTQVED 570
            E     +   I+  +       +    +    I           EI    R   + +  
Sbjct: 328 -ESLELAKKFPILYLSELSEVTDKNALDLSSRPIPTTPHQFAKIAEILRGKREIYSGITL 386

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                 L + Q  R +               L E +   +++ ++       +       
Sbjct: 387 NKYSTWLISAQPTRTV-------------SLLEEHDCPAQFIPNKKDYPGIEKCHIQ--- 430

Query: 631 GKFDVLVGINLLR-EGLDIPECGLVAILDADKEGF-LRSKTSLIQTIGRAAR-------- 680
           G    L    +   EG  +P   +V I D +  G  + + +  I+   RAA         
Sbjct: 431 GTAVALKYSGVAELEGFILPTFRIVVITDREFFGQHVLAPSGYIRKRRRAASKQVDLNQL 490

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           N    VI     + K ++L    T      Q E           +     +  D +    
Sbjct: 491 NPGDYVIHKNHGLGKFLKLESLATREYLVIQYE---------DGLLRVPADSFDSLSRYR 541

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
              ++     +   ++ K  +   + +RK +   A +L
Sbjct: 542 HTGSH---PPELHKMTGKIWEKTKQRVRKSIKKLAVDL 576



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 73/191 (38%), Gaps = 19/191 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I E  +  T    PP   R  +T +     + V   I    
Sbjct: 760 VLTLTATPIPRTLYMSLSGIREISLITT----PPPSRRPIKTHLSSYNPDVVRTAIRNEL 815

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G +I   V      E++   + +     R +  H ++   +    +     G+ D+LV
Sbjct: 816 DRGGQIFYVVPRVEGIEEVAGQIQQMVPSARIVIAHGQMDVNDLEMTMLGFNNGEADILV 875

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + + DA K G L     L   +GR+    ++ ++          
Sbjct: 876 CTTIIESGLDIPRVNTIIVEDAQKFG-LSQLYQLRGRVGRSGIQAHAWLLY-------PN 927

Query: 698 QLAIDETTRRR 708
           +  + ET R+R
Sbjct: 928 KGQLSETARQR 938



 Score = 38.2 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 17/168 (10%)

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSAR----- 565
           L        +   I    TP   ELE         +Q+     +       R        
Sbjct: 577 LNLYAKRAKKEGFIYPPDTPWQEELEDSFPYQPTPDQLKAVQDVKMDLESDRPMDRLVCG 636

Query: 566 ----TQVEDVYDEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
                + E     I  A   G + +      T+LT++    L E      I +  ++   
Sbjct: 637 DVGFGKTEVAVRAIFKAVTSGHKQVALLAPTTILTQQHYHTLKERFAPYPINIGLLNRFR 696

Query: 617 KTLERIEIIRDLRLGKFDVLVGI-NLLREGLDIPECGLVAILDADKEG 663
            T E+ +I++ L  G+ D++VG   LL + +     GL+ I +  + G
Sbjct: 697 TTSEKKDIVQRLATGELDIVVGTHQLLGQSVKFKNLGLLVIDEEQRFG 744


>gi|269957468|ref|YP_003327257.1| transcription-repair coupling factor [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269306149|gb|ACZ31699.1| transcription-repair coupling factor [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 1218

 Score =  141 bits (354), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 90/526 (17%), Positives = 164/526 (31%), Gaps = 112/526 (21%)

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV--SYYDYYQPEAYVPRTDTYI 245
           V  A QRP +V+      A +L +  + + P    +       ++    E   PR DT  
Sbjct: 43  VEAAKQRPVVVVTATGRQADELAASVRAYLPDEQADEVAVLPAWETLPHERLSPRADTVA 102

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLKIG 300
            + +       R+ H    +       ++V     +      G+G +E  +     L  G
Sbjct: 103 RRIAVF----RRLAHPVPETGPAGPIRVLVMPARALLQPVVSGLGELEPVA-----LHDG 153

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           D  +  ++   LV   Y R D+   RG F V G  +++FP   ED   RV  +G+++ EI
Sbjct: 154 DVADLTDVAERLVAAAYSRVDMVERRGEFAVRGGILDVFPP-TEDHPLRVEFWGDEVSEI 212

Query: 361 SEFYPLTGQKIRNVET-IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419
             F     + +   +  +        +        A   ++             G +   
Sbjct: 213 RWFSVADQRSLEIAQQGLWAPPCREILLTASVRARAAALVE----------TMPGAVEML 262

Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT 479
            RL               + + +E+ +  L      +    + + +P+D+LL +DE    
Sbjct: 263 DRLA-----------AGVAVEGMESLAPVLV-----DELVPVLDLVPDDALLVIDEPERV 306

Query: 480 IPQIS-----------------------------GMYRGDFHRKATLAEYG--------F 502
             +                                 +      +A  A  G        F
Sbjct: 307 RRRAHDLVATTEEFLAAAWTGAVAGGAAPIDLSSASFASFADTRAVAARRGLGWWTLSAF 366

Query: 503 RL-PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
            L P   D      E         +   +T         +G+  + +   T       E+
Sbjct: 367 GLDPDAADAVVEPVETTPQRAGQVVSTGST--------TEGVTTDGVTTHTIKAR---EV 415

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVL----TKRMAEDLTEYLYERNIRVRYMHSEVK 617
            S R  +E   +E+    +   R++LT       KRM E L                   
Sbjct: 416 ESYRGDLERALEEVRRLQRDQWRLVLTTEGHGPAKRMVEQLMA---------------AD 460

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
              R+  + D +     VLV   L+ +G   P+  L    ++D  G
Sbjct: 461 CPARLVSVLDEQPDPGVVLVLPALVGKGFVAPDLQLAVFSESDLTG 506



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 55/153 (35%), Gaps = 19/153 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + +SATP    LE     I E     T    PP E     T V    +    AA +  R
Sbjct: 813 VLAMSATPIPRTLEMAVTGIREMSTLAT----PPEERHPVLTYVGAYEERQISAAVR--R 866

Query: 585 ILLTVLTKRMAED-----------LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            LL         +           L E + E  I V   H ++   +  ++IR     + 
Sbjct: 867 ELLREGQVFYVHNRVESIQRTASRLAELVPEARIGVA--HGKMGEHQLDQVIRGFWEKEL 924

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           DVLV   ++  GLDI     + +  AD  G  +
Sbjct: 925 DVLVCTTIVETGLDISNANTLILERADMLGLSQ 957


>gi|296140872|ref|YP_003648115.1| transcription-repair coupling factor [Tsukamurella paurometabola
           DSM 20162]
 gi|296029006|gb|ADG79776.1| transcription-repair coupling factor [Tsukamurella paurometabola
           DSM 20162]
          Length = 1218

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 63/328 (19%), Positives = 119/328 (36%), Gaps = 37/328 (11%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           AA   ++    +  +  L +      + F ++ +      P +V+      A  L SE +
Sbjct: 20  AADPDVVAFAGAAGRPDLTVTAVDGARPFLLSALAGQA--PVLVVTATGREADDLTSELR 77

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA--TRSLLERNDC 272
                +AV  F S+ +    E   P  DT   +       +  +R  A    +       
Sbjct: 78  ETLGADAVTQFPSW-ETLPHERLSPGADTVGRR-------LQVLRRLAWPDDAQYGAPLR 129

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
            VV++V  +    +        V L+ G+  + +EL+ +LV+  Y R D+   RG F V 
Sbjct: 130 AVVATVRSLVQPMAPGLGDAPSVTLREGEEFDFEELIETLVELAYTRVDMVGKRGEFAVR 189

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE--TIKIYANSHYVTPRP 390
           G  ++IFP+   D+  RV  +G++I ++  F     +    V+  T+ +Y     +    
Sbjct: 190 GGILDIFPTTT-DLPVRVEFWGDEITDLRAFSVADQRSQPEVQVGTVHVYPCRELLLTAD 248

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
             + A   +K E                     +      EMLE       +E     + 
Sbjct: 249 VRDRA-ATLKAE--------------------HESDAALAEMLEKLAQGIPVEGMEALIP 287

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHV 478
              PGE    L + +P+ +   + +   
Sbjct: 288 ALVPGE-LQLLTDVLPDGTHTVLLDPEK 314



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 68/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + ++ PP E     T V     + V   I    
Sbjct: 794 VLTMSATPIPRTLEMSMAGIREM----STILTPPEERHPVLTYVGPYDNKQVAAAIRREL 849

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +   + + +     R +  H ++        ++     +FDVLV
Sbjct: 850 LRDGQVFYVHNRVSSIDKAAKQIRDMVPEARVVVAHGQMGEEALESTVQGFWNREFDVLV 909

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  A+  G  +    L Q  GR  R+       +     K  
Sbjct: 910 CTTIVETGLDISNANTLIVERAENLGLSQ----LHQLRGRVGRSRERGYAYFLYPSEKP- 964

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N +  
Sbjct: 965 ---LTETAYDRLSTIAQNNELG 983


>gi|21221548|ref|NP_627327.1| transcriptional-repair coupling factor [Streptomyces coelicolor
           A3(2)]
 gi|10241792|emb|CAC09550.1| putative transcriptional-repair coupling factor [Streptomyces
           coelicolor A3(2)]
          Length = 1184

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 83/547 (15%), Positives = 168/547 (30%), Gaps = 71/547 (12%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
              ++ + L    + + F +A +     RP + +      A  L +  ++  P   +  +
Sbjct: 25  DGNRMHVDLVGPPAARPFAIAALARETGRPVLAVTATGREAEDLAAALRSLLPPEGIVEY 84

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI---- 281
            S+ +    E   PR+DT   + +     + R+ H            +VV+ V  +    
Sbjct: 85  PSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPRPDDPETGPVSVVVAPVRSVLQPQ 139

Query: 282 -YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
             G+G +E  +     L+ G   + +E++ +L    Y R ++   RG F V G  +++FP
Sbjct: 140 VKGLGDLEPVA-----LRTGQGADLEEIVQALAAAAYARVELVEKRGEFAVRGGILDVFP 194

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTPRPTLNTAMKYI 399
              E+   RV  +G+D+EEI  F     + +   E  +        +        A    
Sbjct: 195 P-TEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELLLTDDVRERARVLA 253

Query: 400 KE--ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
           ++  EL   L +                       +    + + +E+ +  L        
Sbjct: 254 EDHPELGELLGK-----------------------IAEGIAVEGMESLAPVLVDDMEL-- 288

Query: 458 PPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL- 513
              L + +P+ S+  V +          +    +            G   P  +D   L 
Sbjct: 289 ---LLDVLPKGSMSVVCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVDAASLW 345

Query: 514 RFEEWNCLRPT--TIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
              +          +  S +P      L        +      G+  P       R    
Sbjct: 346 SIADVRERARELDMMWWSVSPFAADETLTSDLDAEGDSDTLKLGMHAPET----YRGDTA 401

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
               +      +G R +        A    E L    I  R + ++++ L          
Sbjct: 402 KALADTKGWLAEGWRAVYLTEGHGPASRTVEVLGGEGIAAR-LDNDLEALS--------- 451

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
                V V    +  G   P   L  + + D  G   +     +   R  + ++   +  
Sbjct: 452 --PSVVHVSCGSIDHGFVDPALKLAVLTETDLTGQKAAGREGARMPARRRKTIDPLTLET 509

Query: 690 ADTITKS 696
            D I   
Sbjct: 510 GDYIVHE 516



 Score = 38.9 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 68/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV-YDEINLAAQQGL 583
            + +SATP    LE     I E     + +  PP E     T V    + +I  A ++ L
Sbjct: 785 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEHRQIGAAIRREL 840

Query: 584 ----RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
               ++          +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 841 LREGQVFYIHNRVESIDRAAAKLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLV 900

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R        +     K  
Sbjct: 901 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRERGYAYFLYPPEKP- 955

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 956 ---LTETAHERLATIAQHTEMG 974


>gi|163802119|ref|ZP_02196015.1| transcription-repair coupling factor [Vibrio sp. AND4]
 gi|159174260|gb|EDP59068.1| transcription-repair coupling factor [Vibrio sp. AND4]
          Length = 1153

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 59/309 (19%), Positives = 123/309 (39%), Gaps = 37/309 (11%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
              +K Q L  + G+     +A++++     ++++ P+  +A +L +E    F    V  
Sbjct: 14  ERGDKKQ-LGNLPGAALPMAIAELVKQHSSHSVLVVPDPQIALKLQAEI-EQFTDQPVSL 71

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
           F  + +    + + P  +        I+++I R+    T+S    N   +V   + +   
Sbjct: 72  FPDW-ETLPYDNFSPHQEI-------ISDRIARLYQLPTQS----NGVTIVPVSTVLQRQ 119

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
              +   Q  + +K GD    ++L   L    Y+  D     G +   G  +++FP    
Sbjct: 120 SPRDFLLQHTLMVKTGDQFSLEKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSS 179

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           D  +R+  F ++I+ I  F P   + I +++ I++     +    PT   A++  +   +
Sbjct: 180 D-PFRIDFFDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEF----PTTKAAIEDFRTRWR 234

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            +           EA+R  + I      +        IE +          +   TLF+Y
Sbjct: 235 TQ----------FEARREPESIYM---QVTKGTWPAGIEYWQPLFF-----DHTETLFDY 276

Query: 465 IPEDSLLFV 473
           +P+DS L V
Sbjct: 277 LPDDSQLIV 285



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 96/269 (35%), Gaps = 27/269 (10%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
             + ++ATP    L      + +  I  T      + I++   Q ED  V + +     +G
Sbjct: 754  ILTLTATPIPRTLNMAMSGMRDLSIIAT-PPARRLSIKTFVRQCEDSVVREAVLREIMRG 812

Query: 583  LRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++      V T  + AEDL + + E  + V   H +++  E   I+ D    +F+VLV 
Sbjct: 813  GQVYFLHNQVETIEKTAEDLQKLIPEARLTVA--HGQMRERELERIMSDFYHQRFNVLVC 870

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I 
Sbjct: 871  TTIIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAIT 926

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
               D   R        +        +   +I    + +  E +           + + ++
Sbjct: 927  K--DAIKRLDAIASLEDLGAGFTLATHDLEIRGAGELLGDEQSGQIQSVGFTLYMEMLEQ 984

Query: 759  KGKAH-------LKSL-----RKQMHLAA 775
              +A        L  L       +M + A
Sbjct: 985  AVEALKEGKEPSLDELLREQTEIEMRIPA 1013


>gi|22298495|ref|NP_681742.1| transcription-repair coupling factor [Thermosynechococcus elongatus
           BP-1]
 gi|22294675|dbj|BAC08504.1| transcription-repair coupling factor [Thermosynechococcus elongatus
           BP-1]
          Length = 1142

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 82/515 (15%), Positives = 165/515 (32%), Gaps = 92/515 (17%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
           A+LL  +   ++  +L G+    K      + +  ++   V+        +  ++     
Sbjct: 17  AELLSKLQH-QRELVLTGMPRLVKGLVATTLAQESRQSLCVITSTLEEGGRWAAQL-ELM 74

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
             +AV ++             P ++        +  ++   +          N  IV + 
Sbjct: 75  GWDAVFFY-------------PTSEASPYDLFDLEGEMVWGQLQVLVESDRPNIAIVTTE 121

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            +    +   E +    + L++G +    E+ ++L    Y+R  +    G +   GD ++
Sbjct: 122 RALQPHLPPPEQFRAACLTLQVGQAYSLGEVATTLAALGYERVSLVETEGQWSRRGDIVD 181

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-------VETIKIYANSHYVTPRP 390
           IFP   E +  R+  FG++IE I EF P + + +         +E + +   S       
Sbjct: 182 IFPVSAE-LPVRLQWFGDEIESIREFDPASQRSLHTEGDRLDVLEQVTLTPISFTPLIAQ 240

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
            L  A                              I  D E L             RYL 
Sbjct: 241 ALRAADHA-------------------------HLIPEDQEGLR------------RYLG 263

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
              P   P +L +Y+P  +L+ VDE  + +      Y        +L       P    +
Sbjct: 264 LAFP--EPASLLDYLPAQTLIAVDEPPLCVAHGDRWYEHTHTYWQSLET-----PPPPIH 316

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
           RP         R   + +      +EL   +G+ +    R          + +   Q   
Sbjct: 317 RPWSASAQALERFQRLHL------YELA-SEGLGLNLSARA---------VPAIPHQFGR 360

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +     +G  + L       +  L   L E +   ++    V   +    I  L+ 
Sbjct: 361 LAATLREERDKGYTVWLVSAQPSRSVAL---LQEHDCPAQF----VPNPKDFPAIDKLQQ 413

Query: 631 GKFDVLVGINLLRE--GLDIPECGLVAILDADKEG 663
            +  + +  + L E  G  +P    V + D +  G
Sbjct: 414 QRLPIALKASGLAEISGFILPTFRTVLVSDREFFG 448



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 68/195 (34%), Gaps = 17/195 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + E  +  T    PP   R  +T +     E V   I    
Sbjct: 747 VLTLSATPIPRTLYMALSGVREMSLITT----PPPSRRPIQTHLAPYDPETVRSAIRQEL 802

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      E +   L    +  R +  H ++   E    +     G+ D+LV
Sbjct: 803 DRGGQVFYVVPRVEGIEAVAAKLQGMVVGARILIAHGQMAEGELESTMLGFSNGEADILV 862

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + + DA + G  +    L   +GRA    ++ +      +    
Sbjct: 863 CTTIIESGLDIPRVNTILVEDAQRFGLAQ-LYQLRGRVGRAGIQAHAWLFYPRQEVLTDA 921

Query: 698 QLAIDETTRRREKQL 712
                   R R  Q 
Sbjct: 922 AR-----QRLRAIQE 931



 Score = 42.0 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 35/230 (15%)

Query: 531 TPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSAR---------TQVEDVYDEINLAA 579
           TP   E+E         +Q+     +       R             + E     I  A 
Sbjct: 583 TPWQREMEDSFPYQPTPDQLKAIQEVKADMESDRPMDRLVCGDVGFGKTEVAIRAIFKAV 642

Query: 580 QQGLRILL----TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             G ++ +    T+LT++    L E      I+V  ++      ER ++++ L++G+ DV
Sbjct: 643 MAGKQVAVLAPTTILTQQHYHTLKERFAPYPIQVGLLNRFRSERERQDLLQKLKIGEIDV 702

Query: 636 LVGI-NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +VG   LL   +   + GL+ + +  + G  + +        +A +     + L A  I 
Sbjct: 703 VVGTHQLLSNSVKFRDLGLLVVDEEQRFGVNQKEKI------KALKTQVDVLTLSATPIP 756

Query: 695 KSIQLAIDETTR----------RREKQLEHNKKHNINPQSVKEKIMEVID 734
           +++ +A+               RR  Q         +P++V+  I + +D
Sbjct: 757 RTLYMALSGVREMSLITTPPPSRRPIQ---THLAPYDPETVRSAIRQELD 803



 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAP 201
            Y P+ DQ  AI ++   +   R   +L+ G  G GKT   +  + +A+   +   V+AP
Sbjct: 594 PYQPTPDQLKAIQEVKADMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVMAGKQVAVLAP 653

Query: 202 NKILAAQLYSEFKNFFPH 219
             IL  Q Y   K  F  
Sbjct: 654 TTILTQQHYHTLKERFAP 671


>gi|46202166|ref|ZP_00053648.2| COG1197: Transcription-repair coupling factor (superfamily II
           helicase) [Magnetospirillum magnetotacticum MS-1]
          Length = 1131

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 79/487 (16%), Positives = 164/487 (33%), Gaps = 54/487 (11%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            + +A ++   A++      F P   V  F  + D    +   P  D    +  +     
Sbjct: 15  ILHVARDEGRMARMAEALAFFAPDLTVLEFPGW-DCVPYDRVSPHVDMVARRIDT----- 68

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
                +     ++    ++ +  +    +   E+ +Q  +  + G  +   +L+  L K 
Sbjct: 69  ----LARLADGVKGAFVVLTTVPALAQRVPPREALAQATLDARKGSRLSMDKLVGFLAKN 124

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y R D  +  G + V G  +++FP    +   R+  FG++I+ +  F P++ +    VE
Sbjct: 125 GYVRADTVMEPGEYAVRGGIVDLFPPGSAE-PLRLDFFGDEIDSVRSFDPMSQRTTGPVE 183

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
                  S       ++       +E                    + Q      E +  
Sbjct: 184 GFVCRPVSEVGLDEASIARFRTNYRELFG-----------------VIQGADPLYESISE 226

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
                 +E++          +   TLF Y+PE +++   +S   +     +    F  +A
Sbjct: 227 GIKFNGMEHWLPLFH-----DGLDTLFAYLPEAAVVLDHQSDEALTARHALVLEYFDARA 281

Query: 496 TLAEYGFR------LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
            LA  G         P   +   L  +EW+ L     V+  +P     +  +    +   
Sbjct: 282 GLAGAGLTESGMVYHPIAPERLYLERDEWDRLLAVRPVLHLSP----FDAVEDGAPDAGG 337

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           R  G     +  R      + V +     A+ G R+++   T    + L   L +  ++ 
Sbjct: 338 R-LGRDFADMRARPGVNVYDCVREHAEEQAKAGRRVVIAAWTNGSRDRLAGVLKDHGVK- 395

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
                 ++ +E     + L  G+  V V    L  G   PE  L  I + D  G   ++ 
Sbjct: 396 -----GIEPVESWAEAKALDKGRVAVAVLG--LDHGFVTPE--LAVITEQDILGDRLARP 446

Query: 670 SLIQTIG 676
           +  +  G
Sbjct: 447 ARKKKKG 453



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 14/195 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
             + ++ATP    L+     + E  +  T  +D       +      V  + + I     
Sbjct: 735 HVLTLTATPIPRTLQMALSGVKEMSVIATPPIDRLAVRTFVLPYDPVV--LRESILRERY 792

Query: 581 QGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G ++          + + E L +    ++    H  +   +  E++      ++DVL+ 
Sbjct: 793 RGGQVFYVCPRLADIDRVAERLAKLVPEVKTAVAHGRLAPADLEEVMVAFGDKQYDVLLS 852

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            N++  G+D+P    + I  AD  G  +    L Q  GR  R        +     K + 
Sbjct: 853 TNIIESGIDMPSVNTLIIHRADMFGLGQ----LYQLRGRVGRGKTRGYAYFTLPNDKVLS 908

Query: 699 LAIDETTRRREKQLE 713
            A +   +R +    
Sbjct: 909 KAAE---KRLQVMQA 920


>gi|291541698|emb|CBL14808.1| transcription-repair coupling factor [Ruminococcus bromii L2-63]
          Length = 1152

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 79/508 (15%), Positives = 174/508 (34%), Gaps = 64/508 (12%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
                L K +    +     G++   K+  +  +       A  +A ++  A  L ++  
Sbjct: 15  PVFKTLEKNVKPG-RTVCASGLSTINKSNIIYALCRLKGVTAFCLASDEKEAQTLCNDLS 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
                  V                P  D       S + + +  R      L+     + 
Sbjct: 74  CMGLRAYVY---------------PVRDFNFLDFQSRSHEYEHARLKVLLKLINHECDVA 118

Query: 275 VSSVSCIYGIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           ++ V     +    +   Q +++ + G  +  ++   +L    Y+R D     G F + G
Sbjct: 119 IACVDAAAQLTVPRNVLEQSVIEFEEGRELSLEKATKALTLLGYERFDAVEGSGQFSLRG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++ F     D   R   +G++I ++S F   T ++ +  + I +  ++  V       
Sbjct: 179 GILDFFMPDS-DYPVRCEFWGDEITDLSYFDIETQRRFKKADKITLSPSTEIVIED---- 233

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                 +  L  ++    K  R   + + ++++  + E++ +     + + +   +    
Sbjct: 234 ------RAALADKIEHKAKLLRSKNSAKAKEKLFSEAELIRSGAMIANADKFINQIY--- 284

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             + P +LF+Y+  ++L+F  E      +   M   DF    TL + GF      D    
Sbjct: 285 --DKPESLFDYLDRNTLVFASEFTAIQERGKSM---DFISNETLMQ-GFE-----DGTLC 333

Query: 514 R-FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART----QV 568
           R F+ +            + G+  LE    +     I+ + ++    +  SA      Q+
Sbjct: 334 RGFDRFALTFNECTEFLQSHGTIVLE--NFVHGSMPIKLSEIISFSTKQLSAWGGSYKQL 391

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           ++  D +     +G   ++   T+R A++L +      I   Y           E    +
Sbjct: 392 KEDVDGLFTPESKG---VIFAGTERAAKNLCDTFNADGINAVY----------SEGADKI 438

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAI 656
             G+   LV    L  G + P     AI
Sbjct: 439 SKGEL--LVMQGALSAGFEYPSQKFFAI 464



 Score = 41.6 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 9/158 (5%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVY 572
           E +  L      + +SATP    L      + +  +I        PV+          + 
Sbjct: 757 ERFKELCKNVDVLTLSATPIPRTLNMAMSGLRDMSVIEEAPTNRQPVQTYVLEHDDAVIN 816

Query: 573 DEINLAAQQGLRILLT---VLTKRMAE-DLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + I    ++G ++      V T       + E + E  I +   H ++K  E  E+ R +
Sbjct: 817 EAIRRELRRGGQVFYLHNNVETISSCAAKIQEAVPEAKIAIG--HGKMKEGELSEVWRQM 874

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
              + DVLV   ++  G+D+P    + I +AD  G  +
Sbjct: 875 LEQEIDVLVCTTIIETGVDLPNANTLIIENADCMGLSQ 912


>gi|82701772|ref|YP_411338.1| transcription-repair coupling factor [Nitrosospira multiformis ATCC
           25196]
 gi|82409837|gb|ABB73946.1| transcription-repair coupling factor [Nitrosospira multiformis ATCC
           25196]
          Length = 1156

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 78/496 (15%), Positives = 154/496 (31%), Gaps = 62/496 (12%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
              +P  ++  + + A +L  E   F P                   +P  +T      S
Sbjct: 36  KKAKPVTIITASALAAQRLLEEIPFFAPELR-------------TRLLPDWETLPYDTFS 82

Query: 251 INEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELL 309
            ++ +   R +    L+      ++V   + +Y +   E  +     L  G++++   L 
Sbjct: 83  PHQDLVSERLATLYQLMNGACDILIVPVTTALYRMPPPEYLAAHTFFLARGETLDLNALR 142

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369
           S +    Y      +  G + V G  I++FP     + +R+ +  N+IE I  F   T +
Sbjct: 143 SQMTLAGYSHVTQVLSPGEYSVRGGLIDLFPM-GSPLPYRIDLLDNEIETIRTFDVDTQR 201

Query: 370 KIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD 429
            +  V  I++     +                            GR  E    +   +  
Sbjct: 202 SVYPVTEIRLLPAREFPLDEEGRT-----------------RFRGRFREKFEGDPSRSLI 244

Query: 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG 489
            + +   GS   IE Y          E   TLF+Y+P+ +LL +   H     +   +  
Sbjct: 245 YKDISKGGSPAGIEYYLPLFF-----EHTATLFDYLPQTALLCL--HHELYQTVESFWHD 297

Query: 490 DFHRKATLAEYGFR-LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
              R   L     R L    D        +  L+P            E    +    E  
Sbjct: 298 TQARYQLLRGDSDRPLLKPADLFLTTEAFFGALKP----YPRIEIPPEERATKTGGAEVQ 353

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
                L    ++ R+     +         +  G R LL   +    E + ++L +    
Sbjct: 354 GLSIPLPPLQIDRRAVNPAEKLSAFIAEFESSGGGRTLLLAESLGRRELIADHLKQYR-- 411

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              ++ ++      +     R      ++G+  L  G   PE G+  + +++        
Sbjct: 412 ---LNPDI-----CDNYAQFRASTSPFVLGVGPLHNGFIYPEKGIAFVTESELYA----- 458

Query: 669 TSLIQTIGRAARNVNS 684
                  GR  R+   
Sbjct: 459 ---RHLHGRGERDSRK 471



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 83/229 (36%), Gaps = 30/229 (13%)

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
            L+ +DE H    +     +        L      +P     R L       LR  +++ 
Sbjct: 737 GLVIIDEEHRFGVRHKEQLKSLRSEVDVLTLTATPIP-----RTLALSL-EGLRDFSVIA 790

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           +A      ++       E IIR   L +          Q+  +++E++            
Sbjct: 791 TAPQRRLAIKTFVNRFSEGIIREACLRELK-----RGGQIYFLHNEVSTI---------- 835

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
              + M + L   L E  I +   H +++  E   +++D    +F++L+   ++  G+D+
Sbjct: 836 ---QTMHDKLARLLPEARIGIA--HGQMRERELEHVMKDFYQQRFNLLLCTTIIETGIDV 890

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           P    + I  ADK G  +    L Q  GR  R+ +           +++
Sbjct: 891 PTANTIIIHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVPEEEAL 935


>gi|269967617|ref|ZP_06181667.1| transcription-repair coupling factor [Vibrio alginolyticus 40B]
 gi|269827704|gb|EEZ81988.1| transcription-repair coupling factor [Vibrio alginolyticus 40B]
          Length = 1153

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 95/531 (17%), Positives = 200/531 (37%), Gaps = 77/531 (14%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
              +K Q L  + G+     +A++ +     ++++ P+  +A +L +E    F    V  
Sbjct: 14  ERGDKKQ-LGNLPGAALPLAIAELAKQHSSHSLLVVPDPQIALKLQAEI-EQFTDQTVSL 71

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
           F  + +    + + P  +        I+E+I R+     +   +R+   +V   + +   
Sbjct: 72  FPDW-ETLPYDNFSPHQEI-------ISERIARL----YQLPSQRDGITIVPVSTVLQRQ 119

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
                  Q  + +K GD +  ++L   L    Y+  D     G +   G  +++FP    
Sbjct: 120 SPRNFLLQHTLMVKTGDRISLEKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSN 179

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           D  +R+  F ++I+ I  F P   + I +++ I++     + T +     A++  +   +
Sbjct: 180 D-PYRIDFFDDEIDTIRTFDPENQRSIDDIQQIQLLPAHEFPTTKE----AIEDFRTRWR 234

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            +           E + +  ++T              IE +          +   TLFEY
Sbjct: 235 TQ------FDARREPESIYMQVTK-------GTWPAGIEYWQPLFF-----DHTETLFEY 276

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +PEDS +    ++  I      +  D        EY +        RPL       L P 
Sbjct: 277 LPEDSQVI---TYGDIESAVDTFLTD-------VEYRYDQKKVDPLRPL-------LTPE 319

Query: 525 TIVVSATPGSWELEQ--CQGIIVEQIIRPTGLVDPPVEIRSART---QVEDVYDEINLAA 579
            + +       +L+Q     + ++++++  G  + PV+  +      Q ++    +   +
Sbjct: 320 QLWLKKDELFSQLKQLPIAQLSLDKVVKRAGRQNLPVQSLAELGVQQQNKEPLSRLRQFS 379

Query: 580 QQ-GLRILLTVLTKRMAEDLTEYLYERNIRVR-YMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +Q   +I+ +V ++   E LTE L  + I+VR  +H  +           L  G    L+
Sbjct: 380 EQFSGKIVFSVESEGRREALTELL--QGIKVRPVVHGSLYQ--------ALDSGDRFSLI 429

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
                  G    E     I ++D  G       +IQ   +  + VNS  ++
Sbjct: 430 L-GAAEHGFIHEELNFALICESDLLG-----DRVIQRRRKDKKAVNSDTVI 474



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 73/185 (39%), Gaps = 12/185 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         ++    + +   V + +     +G 
Sbjct: 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQKEEPVVREAVLREIMRGG 813

Query: 584 RILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T  + AEDL + + E  I V   H +++  E   I+ D    +F+VLV  
Sbjct: 814 QVYFLHNQVETIEKTAEDLQKLIPEARITVA--HGQMRERELERIMNDFYHQRFNVLVCT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K++  
Sbjct: 872 TIIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAMTK 927

Query: 700 -AIDE 703
            AI  
Sbjct: 928 DAIKR 932


>gi|315501932|ref|YP_004080819.1| transcription-repair coupling factor [Micromonospora sp. L5]
 gi|315408551|gb|ADU06668.1| transcription-repair coupling factor [Micromonospora sp. L5]
          Length = 1218

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 111/326 (34%), Gaps = 51/326 (15%)

Query: 181 KTFTMAKVIEA-----MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + F +A V          RP + +      A  L S   +  P   V  F S+ +    E
Sbjct: 41  RPFAVAAVAADEPAGGAGRPVLAVTATTREADDLASALGSLLPPEQVAVFPSW-ETLPHE 99

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLER--NDCIVVSSVSCI-----YGIGSVE 288
              PR+DT   + +     + R+ H        R     +VV+ V  +      G+G +E
Sbjct: 100 RLSPRSDTVGRRLAV----LRRLAHPDAADAHGRTGPLRVVVAPVRSLLQPQLKGLGDLE 155

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                  QL  GD  + +E+   L    Y R D+   RG F V G  +++FP   ++   
Sbjct: 156 PV-----QLAAGDEADLEEVARRLTDMAYARVDLVTKRGEFAVRGGILDVFPP-TDEHPS 209

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE--ELKMR 406
           RV  +G+++EEI  F     + I  V  +        +        A     E  EL   
Sbjct: 210 RVEFWGDEVEEIRTFAVADQRTIEGVAQMWAPPCRELLLTPAVRERAAALAAEHPELAEI 269

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L +                       L      + +E+ +  L G +  E    L + +P
Sbjct: 270 LDK-----------------------LSEGIPVEGMESLAPALIGADALEL---LVDCMP 303

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFH 492
             + + + +      +   + R    
Sbjct: 304 AGTHVLLCDPERIRTRAHDLVRTSEE 329



 Score = 46.2 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 51/149 (34%), Gaps = 11/149 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQVED--VYDEINLAA 579
            + +SATP    LE     I E     T    PP E           +D  V   I+   
Sbjct: 808 VLAMSATPIPRTLEMAITGIREMSTIAT----PPEERHPVLTFVGAYDDRQVAASIHREL 863

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     L E     R    H ++      +++      +FDVLV
Sbjct: 864 LRDGQVFYLHNRVESIEKTARRLRELVPEARVAVAHGQMGEEALEKVMVGFWEKEFDVLV 923

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLR 666
              ++  G+DIP    + +  AD  G  +
Sbjct: 924 CTTIVESGIDIPNANTLIVERADLLGLAQ 952


>gi|270261435|ref|ZP_06189708.1| hypothetical protein SOD_a06670 [Serratia odorifera 4Rx13]
 gi|270044919|gb|EFA18010.1| hypothetical protein SOD_a06670 [Serratia odorifera 4Rx13]
          Length = 1159

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 121/298 (40%), Gaps = 37/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TG+      A+++E    P +++AP+   A +L  E + F                Q  
Sbjct: 32  LTGAACAVECAEIVERHNGPVMLIAPDMQNALRLRDEIQQFTD--------------QMV 77

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
             +P  +T      S +++I   R S+   L      +++  V+ +   +   E      
Sbjct: 78  TTLPDWETLPYDSFSPHQEIISARLSSLYHLPTMVRGVIILPVNTLMQRVCPHEFLHGHA 137

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K G  + +++L + L +  Y+  D  +  G F   G  ++++P   E+  +R+  F 
Sbjct: 138 LVMKKGQRLSREKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEE-PYRIDFFD 196

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ +  F   T + +  VE I +     +    PT  TA++  + + + +        
Sbjct: 197 DEIDSLRIFDVDTQRTLSEVEAINLLPAHEF----PTDKTAIELFRSQWREQ-------- 244

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
              E +R  + I    + +        IE +          +P P+LF Y+P ++L+ 
Sbjct: 245 --FEVRRDAEHI---YQQVSKGTWPAGIEYWQPLFFS----QPLPSLFSYLPANTLIV 293



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 761 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREVLR 818

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E   E L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 819 GGQVYYLYNDVENIEKAAEKLAELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 878

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD+ G  +    L Q  GR  R+ +           K++
Sbjct: 879 TIIETGIDIPSANTIIIERADRFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 932


>gi|312898732|ref|ZP_07758121.1| transcription-repair coupling factor [Megasphaera micronuciformis
           F0359]
 gi|310620163|gb|EFQ03734.1| transcription-repair coupling factor [Megasphaera micronuciformis
           F0359]
          Length = 1092

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 57/284 (20%), Positives = 109/284 (38%), Gaps = 29/284 (10%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A+ +      +  K+  + G+ GS K+   A V+    + A+++ P         ++
Sbjct: 10  QDEALKEASSSYENG-KIYGVYGLGGSAKSAYAAHVLAKTDKNAVIVVPTTEQVNGWLTD 68

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            + F P   V  +             P     +   ++ + ++   +  A  +L      
Sbjct: 69  LQYFSPQLRVYTY-------------PLVQHTVFTTTTKSLELAAKQMEALTALRGSRQA 115

Query: 273 IVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           +VV++       + + +     ++  K+G+  E++ +LS LV   Y+R D+   RG F V
Sbjct: 116 VVVATAEEAAQFVTAPQKIDDAVLSFKVGEDYERETILSGLVSGGYERSDLVDRRGLFSV 175

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH-YVTPRP 390
            GD I+I+P + E    R+  FG+ +E I  F   T +     ++++I   +  Y     
Sbjct: 176 RGDIIDIYPLN-EKEPIRLEFFGDTLENIRYFNEQTQKSSIKTDSVRILPFALAYDKDDE 234

Query: 391 TLNTAM------------KYIKEELKMRLIELEKEGRLLEAQRL 422
                               IKEELK    E  +        RL
Sbjct: 235 KTTLLDYGNNGIIIWDEGNRIKEELKKSFSESIERKNEAAKWRL 278



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 15/185 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-----VYDEINLAA 579
            + +SATP    L      + +       +  PP E    +T V +     V D I    
Sbjct: 698 VLTLSATPIPRTLHMSLVHLRQM----CLIETPPTERLPVQTYVTEYDGAIVRDAIMREK 753

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           ++G ++          E +   L      + +   H ++        + D   G++DVL+
Sbjct: 754 RRGGQVFFVYNRVATMERMKVELEALVPEVTIGMAHGQMTGSVLEANMFDFYEGEYDVLL 813

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             +L+  GLDI     + + DAD+ G  +    L Q  GR  R+  +    +     K +
Sbjct: 814 CSSLVENGLDIANANTIIVYDADRFGLSQ----LYQMRGRVGRSHRTAYAYFLYRRNKIL 869

Query: 698 QLAID 702
               +
Sbjct: 870 NEVAE 874


>gi|114565647|ref|YP_752801.1| transcription-repair coupling factor [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114336582|gb|ABI67430.1| Transcription-repair coupling factor - superfamily II helicase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 1073

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 149/402 (37%), Gaps = 40/402 (9%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           G+  + +  LL G++GS K F ++++++   R  + + P +  A  L  + + F     +
Sbjct: 13  GVLQKRQNILLTGLSGSAKAFMLSEILKKQNRKLLCLLPEEEKAYDLARDLEAFIEPGRL 72

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
             F++   Y+  E     +   + +  S+   +D  R SA          I+ +  S IY
Sbjct: 73  FMFLARDFYFAKENL---STLEVGRILSLQHCLDHPRQSAI---------IIATPGSFIY 120

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            + +  +  +  + L+ G   EQ+E+L  LV   Y+R D    +G F V G  I+IFP  
Sbjct: 121 PLPAPSAMRESSLLLQQGKEKEQREILKKLVGGGYRRVDTVSRQGEFAVRGGIIDIFPLG 180

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            ++   RV  FG  IE I  F   + +++   E       +  +            I   
Sbjct: 181 HKE-PCRVEFFGELIESIHRFDINSQRRLGKDEGQVKILPADELYGDE----LTCSIFSY 235

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
           L         E R    Q       Y  E L+       I    + L             
Sbjct: 236 LDESSSVFFDEPREFYKQFKRSVRRY-RESLKEACKDGKIIREIKLLDS----------- 283

Query: 463 EYIPED----SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           EY+ ++    S+++      TIPQ++        +K     Y        +    R  +W
Sbjct: 284 EYLKKEIEAHSVIYHAYFPSTIPQVAVTSLQHISQKEMEPFY-----RQYETLFARINDW 338

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
                  I+   +  + E  Q Q  ++EQ I     +D  VE
Sbjct: 339 QGKGLKVILAIKSRVARE--QIQQDLLEQGITGISYLDKIVE 378



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 71/196 (36%), Gaps = 12/196 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            I +SATP    L     G+    +I        P+         E + + +    ++  
Sbjct: 696 VISLSATPIPRSLHMALTGLRDLSVIETPPPERYPITTYVLEYNEEIIVEAVMKEIERQG 755

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++            + E L E    I++   H  +K  E   ++ D   GK+ + +   +
Sbjct: 756 QVFFVHNRIEDIYRVKEQLDELFPGIKIAVGHGRMKEDELSRVMMDFVNGKYQLFLCTTI 815

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+P    + + +ADK G  +    L Q  GR  R+                   I
Sbjct: 816 IESGLDMPNVNTIIVDEADKMGLAQ----LYQLRGRVGRSHRLAYAYLTYRPD----WVI 867

Query: 702 DETTRRREKQL-EHNK 716
            E +++R   + E N+
Sbjct: 868 SEASQKRLNAIREFNE 883



 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 14/133 (10%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           ++TR+   Q++    + L +L        + G  ++P   W         + F+ +  + 
Sbjct: 496 ERTRKKVAQSIQDLAEDLLQLYAHRES--REGYAFSPDTPWQ--------SQFEDEFPFR 545

Query: 149 PSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKI 204
            + DQ  AI ++ K + +R    +L+ G  G GKT   +    +A+   +   ++ P  +
Sbjct: 546 ETPDQLKAINEVKKDMETRRPMDRLVCGDVGYGKTEVFLRAAFKAIMDGKQVAILVPTTV 605

Query: 205 LAAQLYSEFKNFF 217
           LA Q +  F   F
Sbjct: 606 LAEQHFQTFTERF 618


>gi|315126314|ref|YP_004068317.1| transcription-repair ATP-dependent coupling factor
           [Pseudoalteromonas sp. SM9913]
 gi|315014828|gb|ADT68166.1| transcription-repair ATP-dependent coupling factor
           [Pseudoalteromonas sp. SM9913]
          Length = 1157

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/438 (15%), Positives = 151/438 (34%), Gaps = 53/438 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GSG +  +A+ ++      +++ P+   A +L +E +   P N V  F          
Sbjct: 24  LLGSGLSIAIAQGVKQQDNLVLIVTPDTPSALRLETELEYLLPDNPVMIF---------- 73

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMI 294
              P  +T      S ++ I   R +   +L      +++  VS +    +  S+     
Sbjct: 74  ---PDWETLPYDHFSPHQDIISARLATLNTLKNEQQSVLIMPVSTLMLRTAPASFIYGST 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           +  K+GD ++   L  +L +  Y      +  G + + G  ++++P       +R+  F 
Sbjct: 131 LNFKVGDRLDTHALRENLEQAGYMHVQQVMEHGEYAIRGSIVDLYPM-GSKHPFRLDFFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++++ I  F   T +    VE I++     + T    +             R+   EK G
Sbjct: 190 DELDTIRLFDVETQRSDEKVEKIELLPAHEFPTNDTDIERF----------RINYREKFG 239

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSR-YLTGRNPGEPPPTLFEYIPEDSLLFV 473
              E   +  +++              IE Y   +  G        T+F+Y+PE + +  
Sbjct: 240 ASAEQDSVYMQVSK-------GNWPGGIEYYMPLFFDGL------ATIFDYLPESTTVMQ 286

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
                 +   +  +  D +       Y  R       RPL   +    +P   + S    
Sbjct: 287 LGD---LEHAADNFWHDVN-----VRYENR--RVDPLRPLLPPD-ELYQPINELFSNLGN 335

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ---VEDVYDEINLAAQQGLRILLTVL 590
              +   Q  +  +       V+    +R    Q          +    ++  R++++V 
Sbjct: 336 YGRIRLSQAKLGTKAGNKNLAVNELPNVRIDHKQHEPYNAFISYVAEQKKKKGRVVISVE 395

Query: 591 TKRMAEDLTEYLYERNIR 608
           +    E L   L    ++
Sbjct: 396 SDGRRESLLSILKPSGLK 413



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 69/179 (38%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        +++   Q ++  + + +    ++G
Sbjct: 760 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLA-VKTFVRQRDEELIREAVLREIKRG 818

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E + + + E          H +++  E  +I+ D    K++VLV   
Sbjct: 819 GQVYFLHNNVETIERVAQEISEWVPEATVTSAHGQMREQELEQIMTDFYHQKYNVLVCTT 878

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 879 IIETGIDVPTANTIIMDRADKLGLAQ----LHQLRGRVGRSHHQAYAYLLTGNPKALSK 933



 Score = 37.8 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            +  + DQ  AI  +L  + S++   +L+ G  G GKT      A V     +   ++ P
Sbjct: 607 PFEETDDQRNAIEAVLGDMQSKQAMDRLVCGDVGFGKTEVAMRAAFVAVNDNKQVAILVP 666

Query: 202 NKILAAQLYSEFKNFFPHNAVE 223
             +LA Q Y  FK+ F    +E
Sbjct: 667 TTLLAQQHYDNFKDRFADFPIE 688


>gi|260463949|ref|ZP_05812145.1| transcription-repair coupling factor [Mesorhizobium opportunistum
           WSM2075]
 gi|259030324|gb|EEW31604.1| transcription-repair coupling factor [Mesorhizobium opportunistum
           WSM2075]
          Length = 1165

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 89/536 (16%), Positives = 174/536 (32%), Gaps = 70/536 (13%)

Query: 163 GIHSREKVQLLL-GVTGS--GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           G+      Q ++ GV           A +  A  +P + +A +      +        P 
Sbjct: 8   GLPKGRAGQFIVDGVADGYEAFALVQAALEIAPDKPVLFVARDGQRLPAIIEALSFAAPG 67

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
             V    ++ D    +   P +D   ++  ++   I   R             I+ ++ +
Sbjct: 68  LPVLELPAW-DCLPYDRVSPGSDAAAKRLDALTAMIALARKP-------HRAVILTTANA 119

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
            +  I   E         + G+ ++   L+S L    ++R       G F V G  +++F
Sbjct: 120 LLQRIPPAELVEAQTFHARPGNQIDMNALVSRLETSGFERVPTVRGIGEFAVRGGILDLF 179

Query: 340 -PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
            P   E  A R+  FG+ +E I  F   T +     +++ + A S       T++     
Sbjct: 180 APGWTE--ALRLDFFGDTLESIRVFDAATQRTTGQRKSMALQAMSEVALTPETISRF--- 234

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
                  R   +E  G         QR       +        +E++  +       E  
Sbjct: 235 -------RRAYIEAFGAP-------QRDDGLYAAVSEGRRFAGMEHWLPFFY-----ERL 275

Query: 459 PTLFEYIPEDSLLFVDESHVTI-PQISGMYRGDFHRKAT----LAEYGFRLPSCMDNRPL 513
            T+F+Y+P+  ++F   +H  +  + + +      RK      L +     P   D   L
Sbjct: 276 ETVFDYLPDTPVVFDHLAHEALAERHTLILDHYEARKKQADAALKDAAPYKPVAPDLLYL 335

Query: 514 RFEEWNCLRPTTIVVSATP------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
             E           +  TP      G+ ++           +      DP V +      
Sbjct: 336 SPENLIASLGPREAIDFTPFDAPDAGAKKVYHAGSRHGRSFVE--ERADPNVNVF----- 388

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            + V   I        R+++   T+   + L + L E ++        +K +E +     
Sbjct: 389 -DVVVRHIADERAARRRVVIAGWTEGSLDRLGQILAEHHL------GNLKQVETLAEADQ 441

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           L  G+  + V    L  G +     LV + + D  G       LI+   R  R  +
Sbjct: 442 LEPGQAALAVLP--LESGFETE--RLVVVAEQDILG-----DRLIRRSKRKKRASD 488



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 768 HVLTLSATPIPRTLQLALTGVRELSLIATPPVDRMA-VRTFISPFDPLVIRETLLRERYR 826

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G      V       ++ ++L E    ++V   H ++   E  +I+     G++DVL+  
Sbjct: 827 GGHSFYVVPRISDLAEIHDFLRESVPELKVAVAHGQMPPGELDDIMNAFYDGQYDVLLST 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + I  AD  G  +    L Q  GR  R   SKV  YA     + + 
Sbjct: 887 TIVESGLDIPTANTLIIHRADMFGLSQ----LYQLRGRVGR---SKVRAYALFTLPANRK 939

Query: 700 AIDETTRRREK 710
             D   RR + 
Sbjct: 940 LTDTAERRLKV 950


>gi|226939558|ref|YP_002794631.1| Mfd [Laribacter hongkongensis HLHK9]
 gi|226714484|gb|ACO73622.1| Mfd [Laribacter hongkongensis HLHK9]
          Length = 1131

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 89/494 (18%), Positives = 172/494 (34%), Gaps = 76/494 (15%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P +++  +   A ++  E   F P   V +F             P  +T    + S + 
Sbjct: 35  QPLVILTADPQAARRIADELPFFDPELEVAFF-------------PDWETLPYDQLSPHA 81

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSL 312
            +   R +    L +    ++V++V    G +  VE  +     LK GD ++  +L + L
Sbjct: 82  DLVSERLATLWKLRQGKADVIVTAVPTAMGRLAPVEFLAGRTFLLKAGDRLDADQLRADL 141

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
               Y         G F V G  I++FPS    + +R+ +F ++I+ +  F   T + + 
Sbjct: 142 ALAGYTHVTQVYAPGEFSVRGGLIDLFPSGAA-LPYRIELFDDEIDTLRTFDVDTQRTLY 200

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V  +++     + T    +    ++ +E  +         G     Q          + 
Sbjct: 201 PVNDVRLLPAREFPTDEGGVTAFRQHFRETFE---------GDPSRRQ--------LYKD 243

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           +        IE Y          +   T F+Y+ E +L+ +   H T+      +R    
Sbjct: 244 ISAGSIPAGIEYYLPLFF-----DHTATFFDYVGEQALIAL--HHDTLAAAETFWREVEQ 296

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR-P 551
           R+  L             RPL       LRP  ++ +  P +       G + + + R P
Sbjct: 297 RRTML--------GTDPARPLLPPATLYLRPDELMAALKPYARCEIAAGGALPDDLARLP 348

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
              VD   E+      V  +   +        R LL   +    E LT++L E  ++ + 
Sbjct: 349 DLTVDRRAEVP-----VARLKAFLATTPA---RTLLVAESLGRRETLTQFLGEYGLKPQP 400

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           + S          +     G     + +  L  G           +D +++  L S+  L
Sbjct: 401 VDS----------LTGFSQGDMRFALTVGTLTGGF----------VDLERQEALLSEADL 440

Query: 672 IQTIGRAARNVNSK 685
            QT+ R  R    +
Sbjct: 441 YQTVARTPRQQKKR 454



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 81/195 (41%), Gaps = 19/195 (9%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +      V  + + +    ++
Sbjct: 741 VLTLTATPIPRTLAMSLEGLRDFSVIATAPNRRLSVKTFVTPQNNGV--IREAVLRELKR 798

Query: 582 GLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T   M E LTE L E  ++V   H +++  E  +++RD    +F+VL+
Sbjct: 799 GGQVFFLYNEVETIENMREKLTELLPEARVQVA--HGQMRERELEQVMRDFNQQRFNVLL 856

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD+ G  +    L Q  GR  R+ + +   Y  T     
Sbjct: 857 CSTIIETGIDIPNANTIIIHRADRFGLAQ----LHQLRGRVGRS-HHQAYAYLLTGEGMT 911

Query: 698 QLAIDETTRRREKQL 712
           + A+         Q+
Sbjct: 912 KDAMKRLE---AIQM 923


>gi|88813291|ref|ZP_01128530.1| Transcription-repair coupling factor [Nitrococcus mobilis Nb-231]
 gi|88789463|gb|EAR20591.1| Transcription-repair coupling factor [Nitrococcus mobilis Nb-231]
          Length = 1146

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 77/460 (16%), Positives = 148/460 (32%), Gaps = 66/460 (14%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V A +  LA QL +E + F   +     +  ++    + + P  D   ++  ++    
Sbjct: 38  ILVAAASSQLAQQLETELRFFGGDSLDVQMMPDWETLPYDVFSPHQDIVSQRLRTLYRLP 97

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
              R             ++V   + I  I  V    +    ++ G+ +   ++ + L + 
Sbjct: 98  TVQR-----------SVLIVPIATLIQRIAPVNYLEERAFLVQTGERMVLDDMRTRLERS 146

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y+     +  G F V G  +++FP   ++  +R+ +F ++I+ I  F P + +    +E
Sbjct: 147 GYRCVSQVMEHGEFAVRGSILDLFPMGSDE-PYRIDLFDDEIDSIRTFDPESQRSRARIE 205

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I++     + T    +       +   +                 L  R       +  
Sbjct: 206 RIELLPAREFPTDEAAITRFRGNYRSLFE-----------GDPTASLIYR------EVSE 248

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD-----ESHVTIPQISGMYRGD 490
                 IE Y          +   TLF+Y+P D+L  V      E  +T   I   Y   
Sbjct: 249 GRLPNGIEYYLPLFF-----QETATLFDYLPGDTLTVVVGEMNAELDLTWHHIQQRYEQR 303

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
            H +        RL    D    R + +  +R                 C     E   R
Sbjct: 304 RHDRERPLLAPKRLYLAPDELRARLKRFRRVR-----------------CHEHAPEAAGR 346

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           P        ++R A  Q   +            R+L    +    EDL   L    +   
Sbjct: 347 PHFAAATIPDLRIAPQQTNPLGRLQQFLQDYSGRVLFIAESAGRREDLLARLQSIAV--- 403

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
             H +        +    RLG     V +  L +G+++ E
Sbjct: 404 --HPQPVAGWSEFLDHRTRLG-----VAVAPLEQGVELDE 436



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 9/177 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            ++++ATP    L      + +  I  T        +++   Q  D  + +       +G
Sbjct: 749 VLMLTATPIPRTLNMALAGLRDMSIIATPPARRLA-VKTFVNQWNDALIQEACLRELHRG 807

Query: 583 LRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       R  E +   L+E   + RVR  H +++  E   ++ D    +F+VLV   
Sbjct: 808 GQVYFLHNEIRSIERIARQLHELIPDARVRIAHGQMRETELERVMLDFYHQRFNVLVCTT 867

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++  G+D+P    + I  AD+ G  R    L Q  GR  R+ +             +
Sbjct: 868 IIESGIDVPSANTIIINRADRLGLAR----LYQLRGRVGRSHHRAYAYLIAPPKNLM 920


>gi|163841705|ref|YP_001626109.1| transcription-repair coupling factor [Renibacterium salmoninarum
           ATCC 33209]
 gi|162955181|gb|ABY24696.1| transcription-repair coupling factor [Renibacterium salmoninarum
           ATCC 33209]
          Length = 1278

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 100/635 (15%), Positives = 209/635 (32%), Gaps = 97/635 (15%)

Query: 50  RSEAGKHRKNA----AKRMLIHQRENTASKGEFQSQS----SISMSEKQTREISEQTMTP 101
           RS + + R +      +R     R +T     +  +S     +S   ++++ +    ++ 
Sbjct: 16  RSASARRRVSTCGWFERRKPATSRHSTGIGWRYHPRSSWNFGLSCCLRRSKWV---GVSM 72

Query: 102 SVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLL 161
            +  L   ++ D  + +         +    +               P+G +   +A++ 
Sbjct: 73  GLNGLRAALREDPSIARVRAHAEREHAKRSEDLQIG----------APNGLRAPLLAEVA 122

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
           +G+ + +      GV                    + +      +  L +  + + P +A
Sbjct: 123 EGLAAAQANGDHAGV-------------------VLAVTATSRESEDLVAALRAYLPEDA 163

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
           V  F S+ +    E   PR+DT   + S     + R++H            IVV+ V  +
Sbjct: 164 VADFPSW-ETLPHELLSPRSDTVGRRLSV----LRRLKHGGMG--TTGPLRIVVAPVRAV 216

Query: 282 -----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
                 G+  +E       +L IG      +++  L    Y R D+   RG F V G  I
Sbjct: 217 VQPIVQGLADLEPV-----ELSIGQRAPFDQVIRRLADAAYARVDMVTHRGEFAVRGGII 271

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++FP   +    R+  FG+++E +  F     + + ++     +  + +  P   L    
Sbjct: 272 DVFPP-TDPHPVRIEFFGDELESMRWFAVADQRTLTSISGTIEHPKALFAPPCRELL--- 327

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
             I  E++ +  +L+       A          LE +    + + +E+ +  L       
Sbjct: 328 --ITPEVQSKAAKLKDSFPAAAAM---------LEKIAGGIAVEGMESLTPVLVDSMVPV 376

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQ---ISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
                    P  S+  V E      +   +            + A  G   P  + ++ L
Sbjct: 377 VAE-----FPPGSIAVVLEPERVRGRAHDLEATNEEFLEAAWSTASDGGAAPLDV-SQTL 430

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
               +  L  T         SW      GI  E       L  P  E R  +  V ++ +
Sbjct: 431 ASASFASLAQTRGAALRAGVSWWSVSALGIDDETAPELDVLSVPAREPRGYQGNVAEMLE 490

Query: 574 EINLAAQQG-----LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            I    +        R+++       A+ L E  ++ +I    + S  +           
Sbjct: 491 FIGSRVRGNDGGGQWRVVVATDGPGPAQRLAELFHDADIPTARVDSLDEQP--------- 541

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +LG  +V      +  G  +    +  + +AD  G
Sbjct: 542 QLGIIEV--TTAAVGHGFVLDGLKIGLLTEADLLG 574



 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 59/161 (36%), Gaps = 15/161 (9%)

Query: 516  EEWNCLRPTT--IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVEDVY 572
            E+   +R     + +SATP    LE          IR T  +  P E R    T V    
Sbjct: 869  EQLKKMRNNVDVLAMSATPIPRTLEMSLTG-----IRETSTLATPPEERHPVLTYVGPYT 923

Query: 573  DE-----INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEII 625
            D+     I     +  ++          E +  ++ +     R    H ++      +II
Sbjct: 924  DKQASAAIRRELMREGQVFFVHNRVSSIERIAAHVQQLVPEARIAVAHGQMSESRLEQII 983

Query: 626  RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
             D    +FDVLV   ++  GLDI     + +  ADK G  +
Sbjct: 984  VDFWEKRFDVLVCTTIIETGLDISNANTLIVDGADKYGLSQ 1024


>gi|166364821|ref|YP_001657094.1| transcription-repair coupling factor [Microcystis aeruginosa
           NIES-843]
 gi|166087194|dbj|BAG01902.1| transcription-repair coupling factor [Microcystis aeruginosa
           NIES-843]
          Length = 1160

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 82/513 (15%), Positives = 165/513 (32%), Gaps = 75/513 (14%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
           A+L++ +        L G+    K            +  +++  N   AA+  ++ +   
Sbjct: 17  AELIQKLEKN-GNLTLTGLARLPKGLIGTAFARCQGKNLLIICANLEEAARWAAQLEAMT 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI-VVS 276
                 Y              P ++    +  +   ++   +     ++  +   I +V+
Sbjct: 76  WKGVFFY--------------PTSEACPYERFNRESEMIWGQMQVLSAISHQEAGIAIVT 121

Query: 277 SVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +   +   +   E + Q      +G  +E K L  +L +  Y+R  +    G +   GD 
Sbjct: 122 TEKALQPHLPPREVFEQYSDNFAVGRVIEAKNLDLTLARLGYERVSLVETEGQWSRRGDI 181

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++IFP   E +  R+  FG+++E++ EF P T + + ++  + +   S      P+L   
Sbjct: 182 VDIFPVSAE-LPVRLEFFGDELEKLREFDPATQRSLDSIPNLLLTPTSFAAMIAPSLPPT 240

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +     E + R                        E L      + IE +   L+ R   
Sbjct: 241 VADYL-EAEER------------------------EKLANGIYPEGIERFLG-LSFR--- 271

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P +L +Y+PE++L+  DE      +          R     E    LP    +     
Sbjct: 272 -QPASLLDYLPENTLIAFDELESCQARSDRWIEYIGERWQ---EIEPALPQIHRSFG--- 324

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI----RSARTQVEDV 571
           E          +  +       E    +    I    G      EI    R   + ++  
Sbjct: 325 ESLQISVKFPHLYLSEIDDHLSENSLNLSSRPIPTNPGQFAKLAEILRGKREIYSGIKVN 384

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                L + Q  R +               L E +   +++      L+   I R +   
Sbjct: 385 KYATWLISAQPSRTV-------------SLLQEHDCPAQFI---PNPLDFGAIERLIIQN 428

Query: 632 KFDVLVGINLLR-EGLDIPECGLVAILDADKEG 663
               L    L   EG  +P   +V + D +  G
Sbjct: 429 TATALKYSGLAELEGFILPTYRIVVVSDREFFG 461



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 77/211 (36%), Gaps = 20/211 (9%)

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV- 568
           N+  + + +       + ++ATP    L      + E  +  T    PP   R  +T + 
Sbjct: 751 NQKEKIKAFKSNID-VLTLTATPIPRTLYMSLSGVREMSLITT----PPPSRRPIQTHLS 805

Query: 569 ----EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERI 622
               + +   I     +G +I   V      E+    +       R+   H  +   E  
Sbjct: 806 SYNSDVIRTAIRNELDRGGQIFYVVPRIEGIEEKAAAIQGMIPGARIAIGHGRMDEAELE 865

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             +     G+ D+LV   ++  GLDIP    + I DA K G  +    L   +GR+    
Sbjct: 866 TTMLAFNNGEADILVCTTIVESGLDIPRVNTIIIEDAQKFGLAQ-LYQLRGRVGRSGVQA 924

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLE 713
           ++ ++          +  + ET R R K ++
Sbjct: 925 HAWLLY-------PAKAELTETARERLKAIQ 948



 Score = 39.3 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 146 DYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMA 200
            Y P+ DQ  AI  + + +   R   +L+ G  G GKT   +  + +A+    +   ++A
Sbjct: 611 PYQPTADQLKAIQDVKRDLESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTTGHKQVALLA 670

Query: 201 PNKILAAQLYSEFKNFFPH 219
           P  IL  Q Y   K  F  
Sbjct: 671 PTTILTQQHYHTLKERFAP 689



 Score = 39.3 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           T+LT++    L E      I V  ++      E+ +I++ L+ G+ D++VG   LL + +
Sbjct: 673 TILTQQHYHTLKERFAPYPINVGLLNRFRTNSEKKDIVQRLKTGELDIVVGTQLLLSKAV 732

Query: 647 DIPECGLVAILDADKEG 663
           +  + GL+ I +  + G
Sbjct: 733 EFKDLGLLVIDEEQRFG 749


>gi|242239055|ref|YP_002987236.1| transcription-repair coupling factor [Dickeya dadantii Ech703]
 gi|242131112|gb|ACS85414.1| transcription-repair coupling factor [Dickeya dadantii Ech703]
          Length = 1147

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 119/311 (38%), Gaps = 38/311 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + +    Q LLG +TG+      A++IE      +++AP+   A +L  E + F      
Sbjct: 9   LPATAGEQRLLGQLTGAACAVECAEIIERHTGLVVLIAPDMQNALRLRDEIQQFSE---- 64

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCI 281
                      P   +P  +T      S +++I   R S    L       +++   + +
Sbjct: 65  ----------LPIMTLPDWETLPYDSFSPHQEIISARLSILYQLPTLTRGVLILPVNTLM 114

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +          + LK G  + + +L S L +  Y+  D  +  G F   G  +++FP 
Sbjct: 115 QKVCPHTFLHGHALVLKKGQRLSRDKLRSQLEQAGYRNVDQVMEHGEFATRGALLDLFPM 174

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E+  +R+  F ++I+ +  F   T + +  V+ I +     +    PT   A++  + 
Sbjct: 175 GSEE-PFRIDFFDDEIDSLRLFDVDTQRTLNEVDHINLLPAREF----PTEKNAIELFRS 229

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + + R               L Q ++ ++           IE +          +P PTL
Sbjct: 230 QWRERFEVRRDADH------LYQLVSKNI-------LPAGIEYWQPLFFS----QPLPTL 272

Query: 462 FEYIPEDSLLF 472
           F Y+P  +LL 
Sbjct: 273 FSYLPAGTLLV 283



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 64/178 (35%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L      I    II   P   +     +R   + V  V + I     +
Sbjct: 749 ILTLTATPIPRTLNMAMHNIRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 806

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++              + L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 807 GGQVYYLYNDVENIGKAAQRLGELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 866

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKTM 920


>gi|302865387|ref|YP_003834024.1| transcription-repair coupling factor [Micromonospora aurantiaca
           ATCC 27029]
 gi|302568246|gb|ADL44448.1| transcription-repair coupling factor [Micromonospora aurantiaca
           ATCC 27029]
          Length = 1218

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 111/326 (34%), Gaps = 51/326 (15%)

Query: 181 KTFTMAKVIEA-----MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + F +A V          RP + +      A  L S   +  P   V  F S+ +    E
Sbjct: 41  RPFAVAAVAADEPAGGAGRPVLAVTATTREADDLASALGSLLPPEQVAVFPSW-ETLPHE 99

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLER--NDCIVVSSVSCI-----YGIGSVE 288
              PR+DT   + +     + R+ H        R     +VV+ V  +      G+G +E
Sbjct: 100 RLSPRSDTVGRRLAV----LRRLAHPDAADAHGRTGPLRVVVAPVRSLLQPQLKGLGDLE 155

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                  QL  GD  + +E+   L    Y R D+   RG F V G  +++FP   ++   
Sbjct: 156 PV-----QLAAGDEADLEEVARRLTDMAYARVDLVTKRGEFAVRGGILDVFPP-TDEHPS 209

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE--ELKMR 406
           RV  +G+++EEI  F     + I  V  +        +        A     E  EL   
Sbjct: 210 RVEFWGDEVEEIRTFAVADQRTIEGVAQMWAPPCRELLLTPAVRERAAALAAEHPELAEI 269

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           L +L                             + +E+ +  L G +  E    L + +P
Sbjct: 270 LDKLA-----------------------EGIPVEGMESLAPALIGADALEL---LVDCMP 303

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFH 492
             + + + +      +   + R    
Sbjct: 304 AGTHVLLCDPERIRTRAHDLVRTSEE 329



 Score = 46.2 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 51/149 (34%), Gaps = 11/149 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQVED--VYDEINLAA 579
            + +SATP    LE     I E     T    PP E           +D  V   I+   
Sbjct: 808 VLAMSATPIPRTLEMAITGIREMSTIAT----PPEERHPVLTFVGAYDDRQVAASIHREL 863

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     L E     R    H ++      +++      +FDVLV
Sbjct: 864 LRDGQVFYLHNRVESIEKTARRLRELVPEARVAVAHGQMGEEALEKVMVGFWEKEFDVLV 923

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLR 666
              ++  G+DIP    + +  AD  G  +
Sbjct: 924 CTTIVESGIDIPNANTLIVERADLLGLAQ 952


>gi|311695148|gb|ADP98021.1| transcription-repair-coupling factor [marine bacterium HP15]
          Length = 1177

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 84/492 (17%), Positives = 163/492 (33%), Gaps = 51/492 (10%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS +   + +   A +   +V+  +   A +L    + F      E   +  D     
Sbjct: 32  LHGSSEALAICESARAHKGLTLVITRSTADAIRLEQAMRFFLGLPPEEDGPAVSDDGLEL 91

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSL-LERNDCIVVSSVSCIYGIGSVESYSQMI 294
             +P  +T      S ++ I   R      L    +  +VV + + ++ +  V       
Sbjct: 92  LSLPDWETLPYDLFSPHQDIISRRIRTLHRLPATSHGVLVVPARTLMHRLPPVNYLQGNT 151

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L++G S++ +     L    Y+  +     G + V G  ++IFP       +R+ +F 
Sbjct: 152 LLLEVGQSLDIESWRMQLEAAGYRHAENVYEHGEYAVRGAILDIFPMGAS-QPFRIDLFD 210

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++IE +  F P T + I  +E I++     +   +   +            R    E+  
Sbjct: 211 DEIETLRTFDPETQRSIDRIERIELLPAFEFPWHKEARSGF----------RSRWFEQFP 260

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
              +   + Q +T+         +   IE Y          +   TLF+Y+P      V 
Sbjct: 261 DADKDTPIYQDVTH-------GITPPGIEYYLPLFF-----DETATLFDYLP--GATHVF 306

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFR--LPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
            +      +S       +R         R  LP         F +   L           
Sbjct: 307 TADGLNDAVSHFDSETRNRYEDRRHDRLRPILPPKR-----LFLQQEELFGQLKAFPRVT 361

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ-GLRILLTVLT 591
            S E +   G     +  PT  +           +  D    +     +    +L+   +
Sbjct: 362 VSAETKDAAG----SVNCPTTTLPDIA----MDGRAADPAGRLKRFLGEFDGHVLICAES 413

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
               E L E L E+ +       E+KTL   +    L   +  V + I  + +GL +PE 
Sbjct: 414 SGRREALMENLGEQGV-------ELKTLSGWQAF--LDDKESSVAITIAPMEQGLVLPEH 464

Query: 652 GLVAILDADKEG 663
            +  I +    G
Sbjct: 465 SVALITETALFG 476



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    G + +  I    P   +     +R     +  V + I     +
Sbjct: 776 MLNLTATPIPRTLNMAMGHLRDLSIIATPPARRLSVKTFVRQKDNAM--VKEAILREILR 833

Query: 582 GLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T  + AEDL   + E  + V   H +++  +  +I+ D    +F+VLV
Sbjct: 834 GGQVYFLHNDVATIEKTAEDLRSLIPEARVGVA--HGQMRERDLEKIMSDFYHKRFNVLV 891

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           KSI
Sbjct: 892 CTTIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKSI 947



 Score = 45.1 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 4/128 (3%)

Query: 100 TPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQ 159
           T   +AL ++  +   LL         + +S  +  +    F     +  + DQ  AI  
Sbjct: 577 TAKQKALEKIRDTAAELLDVYARREARKGFSFEDPKEAYRAFAAGFPFEETPDQQVAIQS 636

Query: 160 LLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           + + + S +   +L+ G  G GKT      A +     +   V+ P  +LA Q Y  F++
Sbjct: 637 VFEDMTSEQPMDRLVCGDVGFGKTEVAMRAAFLATWSGKQVAVLVPTTLLAQQHYESFRD 696

Query: 216 FFPHNAVE 223
            F    V+
Sbjct: 697 RFSDTPVQ 704


>gi|53803839|ref|YP_114301.1| transcription-repair coupling factor [Methylococcus capsulatus str.
           Bath]
 gi|53757600|gb|AAU91891.1| transcription-repair coupling factor [Methylococcus capsulatus str.
           Bath]
          Length = 1147

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 106/308 (34%), Gaps = 38/308 (12%)

Query: 169 KVQLL--LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           + Q L   G+ G   +  +A  I A     +V+  +   A ++  E K F   +A     
Sbjct: 13  RRQALCWSGLHGCSDSLAIASAIGASPGLFVVVTADAQSALRIEQEVKTFLGGDAALLPF 72

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIG 285
             ++    + + P              +I   R      L      ++++ VS +   + 
Sbjct: 73  PDWEILPYDVFSPL------------PEITSQRLRTFYELSRIQHGLLITPVSTLMHRVA 120

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                      ++ G +V   +   +L    Y+        G F + G  ++++P   E 
Sbjct: 121 PRTHTLANTFSIRTGSAVNIDQTRQTLESVGYQCVSQVYQHGEFAIRGSILDLYPMGSE- 179

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
             +R+ +F +++E I  F P + + I  VE I+++    +      +    +  + E   
Sbjct: 180 TPYRIELFDDEVETIRTFDPESQRSIEKVEDIELFPAREFPFDEAAIKKFRQNFRVEFPD 239

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
            +                   +   + +    +   IE Y      R       TLF+Y+
Sbjct: 240 AV-----------------SRSVLYQDVSKGIAVGGIEYYIPLFVERM-----DTLFDYL 277

Query: 466 PEDSLLFV 473
           P D+ L +
Sbjct: 278 PGDATLIL 285



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 13/189 (6%)

Query: 516 EEWNCLRPTTIVV--SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY- 572
           E +  LR     +  +ATP    L+     + E  +  T      V IR+  T+ +D   
Sbjct: 743 EHFKKLRSEVDFLALTATPIPRTLDMALSGLREISVIATPPPHRHV-IRTFVTEWDDTLV 801

Query: 573 -DEINLAAQQGLRILLTVLTKRMAE-DLTEYLYER--NIRVRYMHSEVKTLERIEIIRDL 628
            + I    ++G ++   V  K   +  L E L +    IR R  H ++   E   I+ D 
Sbjct: 802 QEAITREIKRGGQV-YFVHNKIETQPRLAERLEKLVPGIRTRIAHGQMPERELENIMLDF 860

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              +F+VL+   ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +     
Sbjct: 861 YHQRFNVLLCTTIVESGIDVPSANTILIDRADTFGLAQ----LHQLRGRVGRSHHRAYAY 916

Query: 689 YADTITKSI 697
                 K++
Sbjct: 917 LLVPPKKAM 925



 Score = 45.5 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 9/148 (6%)

Query: 95  SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQP 154
           SEQ      +AL ++      LL            S    +++   F  Q  +  + DQ 
Sbjct: 550 SEQWAKARRKALEQVRDVAAELLDIHARRAAASGRSFATLTEEYLSFAAQFPFEETPDQE 609

Query: 155 AAIAQLLKGIHS-REKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLY 210
            AI  +++ + + R   +++ G  G GKT      A +     R   V+ P  +LA Q Y
Sbjct: 610 TAIQDVIRDLAAPRPMDRVVCGDVGFGKTEVAMRAAFIAAQNGRQVAVLVPTTLLAQQHY 669

Query: 211 SEFKNFFPH-----NAVEYFVSYYDYYQ 233
             F + F       + +  FVS  D  Q
Sbjct: 670 KNFCDRFADWPMRIDVLSRFVSKKDQAQ 697



 Score = 38.2 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 13/113 (11%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT--------KRMAEDLTEYLYERNIRVRYMHSEVK 617
            + E       +AAQ G ++ + V T        K   +   ++    ++  R+    V 
Sbjct: 636 GKTEVAMRAAFIAAQNGRQVAVLVPTTLLAQQHYKNFCDRFADWPMRIDVLSRF----VS 691

Query: 618 TLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKT 669
             ++ + I D+  GK D+++G + LL++ +   + GLV I +  + G    + 
Sbjct: 692 KKDQAQTIADIGDGKVDIVIGTHRLLQKDIRFKDLGLVIIDEEHRFGVAHKEH 744


>gi|149926139|ref|ZP_01914401.1| Transcription-repair coupling factor [Limnobacter sp. MED105]
 gi|149824957|gb|EDM84169.1| Transcription-repair coupling factor [Limnobacter sp. MED105]
          Length = 1188

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 78/491 (15%), Positives = 160/491 (32%), Gaps = 73/491 (14%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQ---RPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
                 L    GS   F +A++    Q   +  ++   N   A +L  E   F P     
Sbjct: 47  GGHRLSLAHPPGSADAFLLAQLCTQAQGQNKLCLITCANPHDATRLQEEITLFAPTLKAH 106

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DCIVVSSVSCIY 282
                        Y+P  +T      S ++ +   R +      + + D ++ ++ + I 
Sbjct: 107 -------------YLPDWETLPYDSLSAHQDLVSERLATLYQTQQGDLDVLITAASTAIQ 153

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +      +      K GD + +K+L   L    Y      +  G + + G  I++F + 
Sbjct: 154 KLAPPSFLAGSTFYFKTGDKLNEKKLREQLTIAGYNHVSQVMTPGEYCIRGGIIDLF-AT 212

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
              + +R+ +F ++IE I  F   T + +  V  +++     Y     +        + +
Sbjct: 213 GTALPFRIDLFDDEIESIKTFDVDTQRSLYPVREMRLLPGREYPMDEQSRAQF----RSK 268

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            + R           E    +  I  D   + T  +   IE Y          E   +L 
Sbjct: 269 WRER----------FEGDPSKVSIYRD---MGTGVASAGIEYYLPLFF-----ETTASLI 310

Query: 463 EYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP-----SCMDNRPLRFEE 517
           +Y+P+  L+F+   H  + Q    +  D   +        + P         N    F  
Sbjct: 311 DYLPKKELVFIQ--HGDVDQALQTFWADTQSRFDFLSKDIQRPILRPSEIYLNATEFFSS 368

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           ++      + +SA+  +   E    ++      P    D     R A   +    + +  
Sbjct: 369 FDNAAR--VNLSASKNALVPEYSGALL------PDLAAD-----RKADDPIFKFRNLVER 415

Query: 578 AAQQGLRILLTVLTKR-MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR-DLRLGKFDV 635
                 + ++ V       E L +Y  E  ++            + E ++  L  G+  V
Sbjct: 416 TGAGSYQQVIMVAPSDGRRETLNQYFLEHKLK----------PYQTETLQGALESGERFV 465

Query: 636 LVGINLLREGL 646
           L    +L +G 
Sbjct: 466 L-CTAVLDQGF 475



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 18/192 (9%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +GI    +I   P   +     +R     V  + + +    ++
Sbjct: 797 VLTLTATPIPRTLAMSMEGIRDFSVIATAPQRRLSIKTFVRRETDSV--IREAVLRELKR 854

Query: 582 GLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T     E L + L E  I +   H ++   +   ++RD    +F+VL+
Sbjct: 855 GGQVYYLHNEVDTIENRREALEKILPEARIGIA--HGQMNERDLERVMRDFYQQRFNVLL 912

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           + +
Sbjct: 913 CTTIIETGIDVPTANTIVIHRADKFGLAQ----LHQLRGRVGRSHHQAYAYMMVNNEEGL 968

Query: 698 QLAIDETTRRRE 709
               +   RR E
Sbjct: 969 SKNAE---RRLE 977


>gi|256787262|ref|ZP_05525693.1| transcriptional-repair coupling factor [Streptomyces lividans TK24]
 gi|289771157|ref|ZP_06530535.1| transcription-repair coupling factor [Streptomyces lividans TK24]
 gi|289701356|gb|EFD68785.1| transcription-repair coupling factor [Streptomyces lividans TK24]
          Length = 1184

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 83/547 (15%), Positives = 167/547 (30%), Gaps = 71/547 (12%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
              ++ + L    + + F +A +     RP + +      A  L +  ++  P   +  +
Sbjct: 25  DGNRMHVDLVGPPAARPFAIAALARETGRPVLAVTATGREAEDLAAALRSLLPPEGIVEY 84

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI---- 281
            S+ +    E   PR+DT   + +     + R+ H            +VV+ V  +    
Sbjct: 85  PSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPRPDDPETGPVSVVVAPVRSVLQPQ 139

Query: 282 -YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
             G+G +E  +     L+ G   + +E++ +L    Y R ++   RG F V G  +++FP
Sbjct: 140 VKGLGDLEPVA-----LRTGQGADLEEIVQALAAAAYARVELVEKRGEFAVRGGILDVFP 194

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTPRPTLNTAMKYI 399
              E+   RV  +G+D+EEI  F     + +   E  +        +        A    
Sbjct: 195 P-TEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELLLTDDVRERARVLA 253

Query: 400 KE--ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
           ++  EL   L +                       +    + + +E+ +  L        
Sbjct: 254 EDHPELGELLGK-----------------------IAEGIAVEGMESLAPVLVDDMEL-- 288

Query: 458 PPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL- 513
              L + +P+ S+  V +          +    +            G   P  +D   L 
Sbjct: 289 ---LLDVLPKGSMSVVCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVDAASLW 345

Query: 514 RFEEWNCLRPT--TIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
              +          +  S +P      L        +      G+  P       R    
Sbjct: 346 SIADVRERARELDMMWWSVSPFAADETLTSDLDAEGDSDTLKLGMHAPET----YRGDTA 401

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
               +       G R +        A    E L    I  R + ++++ L          
Sbjct: 402 KALADTKGWLADGWRAVYLTEGHGPASRTVEVLGGEGIAAR-LDNDLEALS--------- 451

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
                V V    +  G   P   L  + + D  G   +     +   R  + ++   +  
Sbjct: 452 --PSVVHVSCGSIDHGFVDPALKLAVLTETDLTGQKAAGREGARMPARRRKTIDPLTLET 509

Query: 690 ADTITKS 696
            D I   
Sbjct: 510 GDYIVHE 516



 Score = 38.9 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 68/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV-YDEINLAAQQGL 583
            + +SATP    LE     I E     + +  PP E     T V    + +I  A ++ L
Sbjct: 785 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEHRQIGAAIRREL 840

Query: 584 ----RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
               ++          +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 841 LREGQVFYIHNRVESIDRAAAKLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLV 900

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R        +     K  
Sbjct: 901 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRERGYAYFLYPPEKP- 955

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 956 ---LTETAHERLATIAQHTEMG 974


>gi|75908979|ref|YP_323275.1| transcription-repair coupling factor [Anabaena variabilis ATCC
           29413]
 gi|75702704|gb|ABA22380.1| transcription-repair coupling factor [Anabaena variabilis ATCC
           29413]
          Length = 1188

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 90/528 (17%), Positives = 178/528 (33%), Gaps = 89/528 (16%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +R++   L G+    K    + + +       V+      A + Y++ +         Y 
Sbjct: 24  NRQQDLRLNGIPRLPKGLVASALAQNSGNNLFVVCATLEEAGRAYAQLEAMGWQTVHFYP 83

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM------------RHSATRSLL------ 267
            S    Y+P  + P T+    +   + + +                 +AT S        
Sbjct: 84  TSEASPYEP--FDPETEMTWGQMQVLADLVKSQPSGFGSSQSTVTAKTATASQSTVNSQQ 141

Query: 268 -----ERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
                ++N   VV++V  +   +   +++    + LK G   + +     +    Y+R  
Sbjct: 142 STVNGQQNKIAVVATVGALQPHLPPPDAFIPFCLTLKRGLEFDLETFSEKITILGYERVP 201

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK-IRNVETIKIY 380
           +    G +   GD +++FP   E +  R+  FG++IE+I EF P T +  +  +  I + 
Sbjct: 202 LVETEGQWSRRGDIVDVFPVSSE-LPVRLEWFGDEIEQIREFDPNTQRSALDKITEIVLT 260

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             S               I   L+                   Q ++ D E+        
Sbjct: 261 PTSFTPI-----------ITTALEESAEY--------------QVLSADSEINSAL---- 291

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IE   R+L      E P ++ +Y+PE++L+ +DE        S  +  +   + +L   
Sbjct: 292 -IEGSRRFLGL--AFERPASVLDYLPENTLITIDEPEQC-HAHSDRWVENAEEQWSLGTG 347

Query: 501 GFRLPSCMD---NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP 557
              L S      +R       +  R  T+ +S      EL +    +         L   
Sbjct: 348 ETDLGSVQLPKIHRSFEECLADATRFKTLYLS------ELSEENSGV--------NLASR 393

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V +     Q   + D +     +   I L       +  L   L E +   +++ +   
Sbjct: 394 SVPVTP--HQFAKLADTLRQERDRNFSIWLISAQPSRSVSL---LQEHDCPAQFIPNPRD 448

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLR--EGLDIPECGLVAILDADKEG 663
                + I  L++    V +  + L   EG  +P   L  I D +  G
Sbjct: 449 ----YQAIDKLQINHTPVALKYSGLAELEGFILPTYRLAVITDREFYG 492



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 94/254 (37%), Gaps = 23/254 (9%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
             + +SATP    L      I E  +  T    PP   R  +T +     E V   I    
Sbjct: 791  VLTLSATPIPRTLYMSLSGIREMSLITT----PPPTRRPIKTHLSPRNPESVRSAIRQEL 846

Query: 580  QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
             +G ++   V      E++T  L E     R+   H ++   E    +     G  D+LV
Sbjct: 847  DRGGQVFYVVPRVDGIEEITANLREMVPGARFAIAHGQMDESELESTMLTFSNGDADILV 906

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  GLDIP    + I DA + G L     L   +GRA    ++ +           
Sbjct: 907  CTTIIESGLDIPRVNTILIEDAHRFG-LSQLYQLRGRVGRAGIQAHAWLFY-------PK 958

Query: 698  QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV-IDPILLEDAATTNISIDAQQLSLS 756
            Q  + +  R+R + ++   +        +  + ++ I  +     A  +  ++A    L 
Sbjct: 959  QRELSDAARQRLRAIQEFTQLG---SGYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLY 1015

Query: 757  KKKGKAHLKSLRKQ 770
             +  +  ++ +R Q
Sbjct: 1016 MEMLEESIREIRGQ 1029


>gi|154503862|ref|ZP_02040922.1| hypothetical protein RUMGNA_01688 [Ruminococcus gnavus ATCC 29149]
 gi|153795461|gb|EDN77881.1| hypothetical protein RUMGNA_01688 [Ruminococcus gnavus ATCC 29149]
          Length = 1121

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/309 (19%), Positives = 119/309 (38%), Gaps = 44/309 (14%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            ++L+     + +  + G   S KT  M  + +      I++  ++  A + Y E++  F
Sbjct: 16  QEILQKRRKEKGILQIAGCVNSQKTHLMYALGDGFSYK-IIVFSSEEKAQKAYEEYR--F 72

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND----CI 273
             + V Y+             P  D            + + R    RS++ R       +
Sbjct: 73  LDSGVLYY-------------PARDLLFYHADIKGNYLMKQRMEVIRSMVTRQKNQEITV 119

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           + +  + + G+   E      +Q+  GD+V+  +L   L    Y R+      G F V G
Sbjct: 120 ITTMDAFLDGLSPAEEIVSKRIQISSGDTVDFTKLQERLSCLGYAREVQIEGPGQFAVRG 179

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH--------- 384
             ++IFP   E+V  RV ++G++++ I  F   + + I N++ I+IY  +          
Sbjct: 180 GILDIFP-LTEEVPVRVELWGDEVDSIRTFDVESQRSIENLQEIEIYPAAELQSQKKQSF 238

Query: 385 -----------YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
                      ++     L      I+EE +  + + E+ G L E Q L   +   LE+L
Sbjct: 239 LEYFPTEESILFLDEPQRLIEKANEIEEEFQESVRKREEAG-LEETQELT--VYPVLEIL 295

Query: 434 ETTGSCQSI 442
                   +
Sbjct: 296 NRINQFYGV 304



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      I +  ++    +   P++        E V + I     +  
Sbjct: 716 VLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDRMPIQTYVMEYNDEMVREAIQRELDRDG 775

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++           ++ +++ +   +  V + H ++   E   I+ D   G  DVLV   +
Sbjct: 776 QVYYVYNRVSDIAEIADHVQKLVPDATVAFAHGQMAEHELENIMYDFINGDIDVLVSTTI 835

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-- 699
           +  GLDI     + I DAD+ G L     L   +GR+ R   + ++   D + K +    
Sbjct: 836 IETGLDISNANTMIIHDADRLG-LSQMYQLRGRVGRSNRMAYAFLLYRRDKLLKEVAEKR 894

Query: 700 --AIDE 703
             AI E
Sbjct: 895 LAAIRE 900


>gi|134097431|ref|YP_001103092.1| transcription-repair coupling factor [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291004579|ref|ZP_06562552.1| transcription-repair coupling factor [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133910054|emb|CAM00166.1| transcription-repair coupling factor [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 1195

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 91/475 (19%), Positives = 164/475 (34%), Gaps = 49/475 (10%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            RP +++      A ++ +   +    + VE F S+ +    E   PR DT   + +   
Sbjct: 52  DRPVLLVTATGREAEEVAAAVSDLIGSDGVEVFPSW-ETLPHERLSPRADTVGRRLAV-- 108

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
             + R+ H        R   +V +  S I  I          V+L++GD  + +EL+  L
Sbjct: 109 --LRRLAHPEEHD-HGRIRVLVTTVRSLIQPIA-PGLGELAPVRLRVGDEHDFEELVEKL 164

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
               Y R D+   RG F V G  +++FP   E+   RV  +G+++ E+  F     + + 
Sbjct: 165 AALAYNRVDMVEKRGEFAVRGGIVDVFPP-TEEHPLRVEFWGDEVTEVRPFSVADQRSLP 223

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
             +   ++A +               I E+++ R  +L ++          +   +  EM
Sbjct: 224 EAQDTTLFAPACREL----------LITEQVQERAAKLAEQ---------HEADAHLNEM 264

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR---G 489
           L        +E     +     GE    L + +P  + + V +      + + + R    
Sbjct: 265 LGKIAGGAPVEGMEALIPALCEGEMRL-LTDLVPGGTHVVVADPEKVRARAADLVRTGQE 323

Query: 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS-WELEQCQGIIVEQI 548
                  +A  G R P       L    +  L        +T    W L Q      E  
Sbjct: 324 FLEASWMVAADGGRAP-----IDLGASAYRGLAEVAAHTESTGLPWWTLTQLSSEDTEDD 378

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
                L    V+  + R +VE  + ++      G   +L V     A+   + L E  + 
Sbjct: 379 DGVVRLALKQVD--AYRGEVERAFADLRAHTTAGGAAVLVVAGAGTAQRAVQQLREGELP 436

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            R     +                  V V    L +G   PE  LV + +AD  G
Sbjct: 437 ARLAEDGLTAEPE----------PGVVTVARGGLEDGFAAPEVALVVLTEADLTG 481



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 69/202 (34%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + ++ PP E     T V     + V   I    
Sbjct: 785 VLTMSATPIPRTLEMSMAGIREM----STILTPPEERHPVLTYVGAYDEKQVAAAIRREL 840

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++       +  E    +L E     R +  H ++      +II+     + DVLV
Sbjct: 841 LRDGQVFFVHNRVQTIEKAARHLRELVPEARIVTAHGQMNEDRLEKIIQGFWEREHDVLV 900

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  +D  G  +    L Q  GR  R        +     K  
Sbjct: 901 CTTIVETGLDISNANTLIVERSDVLGLSQ----LHQLRGRVGRARERGYAYFLYPEEKP- 955

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + +T   R   +  N +  
Sbjct: 956 ---LTDTAHDRLATIAQNSELG 974


>gi|289178790|gb|ADC86036.1| Transcription-repair coupling factor [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 1248

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 79/469 (16%), Positives = 162/469 (34%), Gaps = 59/469 (12%)

Query: 152 DQPAAIAQLLKG-IHSREK--VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           DQ  A A L++G + + E     +L+G     +    A    A ++P +++ P+   A  
Sbjct: 91  DQ--AFAGLVEGHVDAGEDADPSILVGAPNGIRPALAAA--SADRKPVVIVVPSGREAED 146

Query: 209 LYSEFKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           L  + ++++  +  E      ++    E   PR DT   +  +      R+ H  + S +
Sbjct: 147 LVGDLRSWYDGDPNEVAQLMAWETLPHERLSPRADTVANRMETF----YRLCHPQSDSEM 202

Query: 268 ERNDCIVVSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
                I+V  V  +      GIG V+           G+ +  ++ +  LV+  Y R D+
Sbjct: 203 FGPIRILVMPVRSLIQPVVAGIGDVKPLVFAQ-----GEEITLEDAVQGLVRNSYTRVDL 257

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIKIYA 381
            + RG F V G  I++F    E    R+  FG++I+ I  F+    +     + ++    
Sbjct: 258 VMDRGEFAVRGGIIDVFVP-TEPHPVRIEFFGDEIDTIRRFHSSDQRTYGEPIRSVWATP 316

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
                        A   I              G++  A  L + I   +         + 
Sbjct: 317 CRELQLTEGIRERAQSLI--------------GQIPNADDLLESIANAIPQ-------EG 355

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLA 498
           +E+    L      EP  ++    P D ++ + +       +  +             +A
Sbjct: 356 MESLIPALVDDL--EPVSSML---PRDCIVMLFDPERLRRAVDDLMKTANEFLATSWHVA 410

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
             G    + +      F + + +            + EL +  G  V+Q +     +D  
Sbjct: 411 ASGHGAGAPISFEAANFLDLDEVVGQLTY-----SNHELWKVSGFTVDQSLPGHVQIDA- 464

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           V  +      E   D +    ++   +++T   +     L   L E  +
Sbjct: 465 VAPQDLHGSGEKAEDHLGELIRKDYAVVITAAAQGTLSRLKRMLNEIGV 513



 Score = 44.3 bits (103), Expect = 0.090,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 71/201 (35%), Gaps = 17/201 (8%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
             + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 849  VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAIRRELLRG 907

Query: 583  LRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++          E+    L + + E  I +   H ++   +  +IIRD      DVL+ 
Sbjct: 908  GQVFYIHNRVEGIEEKAKRLQDLVPEARIGIA--HGKMGRKQLDQIIRDFWHRDIDVLLC 965

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  GLDI     + +  AD+ G  +    L Q  GR  R  +     +    +K + 
Sbjct: 966  TTIVETGLDISNANTLIVDRADRFGLSQ----LHQLRGRVGRGRDRAYAYFLYDPSKPM- 1020

Query: 699  LAIDETTRRREKQLEHNKKHN 719
                E +  R   +  N    
Sbjct: 1021 ---TEQSHERLVTIAQNTALG 1038


>gi|34496601|ref|NP_900816.1| transcription-repair coupling factor [Chromobacterium violaceum
           ATCC 12472]
 gi|34102455|gb|AAQ58821.1| transcription-repair coupling factor [Chromobacterium violaceum
           ATCC 12472]
          Length = 1130

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/316 (17%), Positives = 118/316 (37%), Gaps = 40/316 (12%)

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
           +  +A + +  +RP +++A +   A +L +E   F P  ++  F  + +    + + P  
Sbjct: 25  SHAIAALAKQ-RRPLLILAADAQAAQRLKAELPFFAPDLSIALFPDW-ETLPYDHFSPHG 82

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIG 300
           D   E            R +    + +R   +V++ VS  +  +  V         LK G
Sbjct: 83  DLVSE------------RLATLWQIRQRECQVVIAPVSTALGRLAPVSYLLGRTFFLKTG 130

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
             ++ ++L   +V   Y+     +  G F V G  I+++P     + +R+ +F  +I+ +
Sbjct: 131 QQLDVEKLRGDMVTAGYQHVTQVMAPGEFSVRGSLIDLYPM-GSPLPYRIDLFDAEIDSL 189

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
             F P T + +  V  +++     Y      +    +  +E++              E  
Sbjct: 190 KTFDPDTQRTLYPVPEVRMLPAREYPADESGVTAFRQRYREKM--------------EGD 235

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
             + R+  D   +        IE Y          +   TLF+Y+ +D+L+   + H   
Sbjct: 236 PSKSRVYKD---VSQGLWPAGIEYYLPLFF-----DETATLFDYVGDDALVV--QHHDVQ 285

Query: 481 PQISGMYRGDFHRKAT 496
                 +R    R   
Sbjct: 286 AAAETFWRDAQSRYDM 301



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 74/187 (39%), Gaps = 17/187 (9%)

Query: 525 TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L                P+  +     +      V  V + +    ++
Sbjct: 740 VLTLTATPIPRTLSMALEGLRDFSAIATAPSRRLAVKTFVSPLSNGV--VREAVLRELKR 797

Query: 582 GLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T   M E L E + E  I V   H +++  E  +++RD    +F++L+
Sbjct: 798 GGQVFFLHNEVDTIENMREKLAELIPEARIGVA--HGQLRERELEQVMRDFLQQRFNLLL 855

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA--DTITK 695
              ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +         D +T+
Sbjct: 856 CSTIIETGIDIPNANTILINRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPDGMTR 911

Query: 696 SIQLAID 702
             Q  ++
Sbjct: 912 DAQKRLE 918


>gi|17546361|ref|NP_519763.1| transcription-repair coupling factor protein [Ralstonia
           solanacearum GMI1000]
 gi|17428658|emb|CAD15344.1| probable transcription-repair coupling factor protein [Ralstonia
           solanacearum GMI1000]
          Length = 1157

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 87/529 (16%), Positives = 170/529 (32%), Gaps = 81/529 (15%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAP-NKILAAQLYSEFKNFFPHN 220
           +   ++  +  G+ GS     +A+ +   +   P + +   N + A +L  E + F P  
Sbjct: 26  VKPGQRF-VFSGLQGSADALLLARYLAQHRDAVPMLAVVCANAVDAQRLADELRWFAPQA 84

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVS 279
            V+              +P  +T      S ++ +   R +    L       ++V + +
Sbjct: 85  RVKL-------------LPDWETLPYDNFSPHQDLISERLATLHDLQGGACDLLLVPAST 131

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
            +  I      +      K G+ +++  L +      Y+     +  G + V G  I++F
Sbjct: 132 ALQRIAPPSFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLF 191

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P     + +R+ +FG++I+ I  F P T + +  V  +++     +              
Sbjct: 192 PM-GSPMPYRLDLFGDEIDTIRAFDPDTQRSLYPVNEVRLLPGREFPMDEAARTAF---- 246

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
                         GR  E    +       + +        IE Y          E   
Sbjct: 247 -------------RGRWREVFEGDPTRAPIYKDIGNGVPSAGIEYYLPLFF-----ETTA 288

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN-RPLRFEEW 518
           TLF+Y+P  + L +      +  I    R       T   YGF      D  RPL     
Sbjct: 289 TLFDYLPASAHLAL------VGDIESAVRRF--WADTTQRYGFM---RHDRDRPLLAPSA 337

Query: 519 NCLRPTTIVVSATP-GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
             L      ++A P     L    G     +  P+  V+   E        + + +  + 
Sbjct: 338 LYLDEEAFFIAAKPHARLVLRAEPGEAPLSLPLPSVAVNRRAE--------DPLVNLESF 389

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +   R+++   +    E L + L         +H E           DL  G    ++
Sbjct: 390 LTRGNCRVMICAESAGRRETLAQMLAASG-----LHPEGVADC-----ADLMGGDARFVL 439

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           G+  L +G          IL  ++  F+       Q + R  R    + 
Sbjct: 440 GVAPLYQGF---------ILGDERIAFITETELYAQALRRGGRRKQEQA 479



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 77/198 (38%), Gaps = 20/198 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + I    ++
Sbjct: 766 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGV--LREAILRELKR 823

Query: 582 GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E+    L E + E  + V   H ++   E   ++RD    + ++L+
Sbjct: 824 GGQVYFLHNEVETIENKRAKLEELVPEARVAVA--HGQMHERELERVMRDFVAQRANILL 881

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +             +
Sbjct: 882 CTTIIETGIDVPTANTILIHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDADGL 937

Query: 698 QLAIDETTRRRE--KQLE 713
                ++ RR E  +Q+E
Sbjct: 938 TK---QSQRRLEAIQQME 952


>gi|295096197|emb|CBK85287.1| transcription-repair coupling factor [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 1148

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 127/333 (38%), Gaps = 42/333 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + + ++ QL  G +TG+     +A++ E    P +++AP+   A +L+ E + F   +++
Sbjct: 11  VKAGDQRQL--GELTGAACATLVAEIAERHPGPVVLVAPDMQNALRLHDEIRQFT--DSL 66

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
            + ++ ++    +++ P  +    + S++ +     R             ++V   + + 
Sbjct: 67  VFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQ 115

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +          + +K G  + +  L   L    Y+  D  +  G +   G  ++++P  
Sbjct: 116 RVCPHSYLHGHALVMKKGQRLSRDALRVQLDGAGYRHVDQVMEHGEYATRGALLDLYPM- 174

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
             D  +R+  F ++I+ +  F   T + +  V++I +     +    PT  TA++  + +
Sbjct: 175 GSDRPYRLDFFDDEIDSLRVFDADTQRTLEEVDSINLLPAHEF----PTDKTAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            + R                     +  + +        IE +          EP P LF
Sbjct: 231 WRDRFDVKRDA-------------EHIYQQVSKGTLPAGIEYWQPLF----FNEPLPALF 273

Query: 463 EYIPEDSLLF----VDESHVTIPQISGMYRGDF 491
            Y P ++L+     +D S       +     + 
Sbjct: 274 SYFPANTLIVNTGDIDASASRFESETRARFENR 306



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDNLV--VREAILREVLR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ A+ L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAADRLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|328465651|gb|EGF36870.1| excinuclease ABC subunit B [Lactobacillus rhamnosus MTCC 5462]
          Length = 116

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/117 (44%), Positives = 76/117 (64%), Gaps = 1/117 (0%)

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +N++ID++RHSAT +LLERND IVV+SVS I+G+G    Y   ++ L+ G ++++  LL 
Sbjct: 1   MNDEIDKLRHSATSALLERNDVIVVASVSSIFGLGDPHEYKNHVLSLRTGMTIDRNTLLR 60

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
            LV  Q+ R DI   RG FRV GD +EIFP+    +      FG++I+ I+E   LT
Sbjct: 61  QLVDIQFDRNDIDFQRGRFRVRGDVVEIFPASR-VITPSALNFGDEIDRITEVDALT 116


>gi|218710049|ref|YP_002417670.1| transcription-repair coupling factor [Vibrio splendidus LGP32]
 gi|218323068|emb|CAV19245.1| transcription-repair coupling factor [Vibrio splendidus LGP32]
          Length = 1153

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 97/515 (18%), Positives = 187/515 (36%), Gaps = 66/515 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS    T+AK+ E      ++  P+  +A +L SE + F  H                
Sbjct: 24  LVGSSLALTIAKLAEQHNSHTLLAVPDPQIALKLQSEIEQFTAHEV-------------- 69

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS-QMI 294
           A  P  +T      S +++I   R +   +L    D I +  +S +    S   +  Q  
Sbjct: 70  ALFPDWETLPYDSFSPHQEIISDRIARLYALPTLKDGITIVPISTLLQRQSPRDFLLQHT 129

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K GD    ++L   L K  Y+  D     G +   G  +++FP   +D  +R+  F 
Sbjct: 130 LMVKTGDLYSLEKLRLQLEKSGYRYVDQVFGPGEYASRGSILDLFPMGSKD-PYRIDFFD 188

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P   + I ++  I++     +    PT  TA++        R+   ++  
Sbjct: 189 DEIDTIRTFDPENQRSIEDISEIRLLPAHEF----PTSETAIEDF------RIRWRQQFD 238

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
              E + +  +++              IE +          E   TLF+Y+ +++ L + 
Sbjct: 239 ARREPESVYMQVSK-------GTWPAGIEYWQPLFF-----EHTETLFDYVADEAQLLIL 286

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
               T   +        HR         R     +   L+ +E          VS     
Sbjct: 287 GDVET--AVDSFLTDVSHRYEQRGVDPLRPLLTPEQLWLKKDELFAHFKQKPQVS----- 339

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ-GLRILLTVLTKR 593
                    I E+  R T L   P+   S + Q ++    +    +    +++ +V ++ 
Sbjct: 340 ----LSLDTIEEKAGR-TNLPVMPLPDLSVQHQNKEPLSNLRKFTEAFNGKVVFSVESEG 394

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L+E L  R I+VR           +E +     GK    + +     G    E  +
Sbjct: 395 RREALSELL--RGIKVR--------PSEVENLDAAIKGKDKFTLILGSAEHGFIHEEQNI 444

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             I ++D  G       ++Q   +  ++VNS  ++
Sbjct: 445 ALICESDLLG-----DRVVQRRKKDKKSVNSDTVI 474



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 66/180 (36%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R +   +  V + +     +
Sbjct: 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRESDDAI--VREAVLREIMR 811

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E   E L +     R    H +++  E   I+ D    +F++LV  
Sbjct: 812 GGQVYFLHNQVDTIEKTAESLQKLIPEARVTVAHGQMRERELERIMNDFYHQRFNLLVCT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K++  
Sbjct: 872 TIIETGIDVPTANTILMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAMTK 927


>gi|303232983|ref|ZP_07319663.1| transcription-repair coupling factor [Atopobium vaginae PB189-T1-4]
 gi|302480910|gb|EFL43990.1| transcription-repair coupling factor [Atopobium vaginae PB189-T1-4]
          Length = 1138

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 90/523 (17%), Positives = 172/523 (32%), Gaps = 71/523 (13%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I Q  + +   E   L   ++ S +T  +A +     RP + +        +  S    +
Sbjct: 16  IKQAFEALAHGEDCTL--EISQSARTLILAALWALQPRPYLYVVAGDEACERAASMLAGW 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              + V  + +            R+D     + +    +   R  A   L     CIVV+
Sbjct: 74  LGADCVCSYPN------------RSDMPWSDDCAPAAVVAA-RTKALHMLAAGTPCIVVA 120

Query: 277 SV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR--QDIGI-IRGTFRVC 332
           S  S +  +    S       L + D  +  ++  +L+   Y+R      +   G F + 
Sbjct: 121 SARSLLRRLPPTTSAHTSPFVLALADERQPSDVARTLLAMGYERIATPRDLTQPGMFCLQ 180

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           GD ++IF +  E    R+  FGN+I+ I  F P TGQ I  +ET++++A         T+
Sbjct: 181 GDRLDIFSA-TEQTCVRIEFFGNEIDSIRSFLPATGQTIAPLETLEVFACKEVALTPETI 239

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
             A          R    ++       Q        +LE LE        +     L G 
Sbjct: 240 ARA----------RTALFDRAQEDAALQT-------ELEHLENGCYTAYTDALLCELYGS 282

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
           +      +  +YI     + + E           Y     R         R        P
Sbjct: 283 S-----ASPIDYIDASCCVVLAEPRALFDDCQHAYDDIEQRAQN-----ARASMQGLYTP 332

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
            +  ++   +  ++   A  G+   +    ++ EQ                A +Q + + 
Sbjct: 333 CQQLDFGSQQRFSMSSFARVGA---KTQHSVVAEQP-------------HIAGSQTK-LT 375

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           + I    ++G+ ++  V  +     L   L +  I          +   +E     RL  
Sbjct: 376 ERIRQLFERGMHVVFAVPNRDAQHALELSLSDAGIS-------FTSARELEDAHATRLPA 428

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
             V+   + +  G+ IP+  L  +   D    +  +    Q I
Sbjct: 429 GRVVFLNDAIHAGVIIPKARLAVLSIGDLSIHINPQHHRFQRI 471



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    ++     + +    +  P G     V +       + + D I     +
Sbjct: 754 VLTLSATPIPRTMQMAMSGVRDMSLILTPPPGRKSVIVHVGEWDA--DVISDAIRFELAR 811

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++          +   E +       R    H ++   +  +++      + DVLV  
Sbjct: 812 SGQVYYVSNRVATIDQAIERVRSAAPEARVGVAHGQMSAAQIEDVMLSFAEREIDVLVAT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D P    + I DA + G  +    L Q  GR  R    ++  YA  +    Q 
Sbjct: 872 TIIESGIDNPHTNTLIIEDAQRLGLAQ----LYQLKGRVGR---GRLQAYAYIMFPETQP 924

Query: 700 AIDETTRRREKQLEHNKKHN 719
             DE  RRR + +  +++  
Sbjct: 925 LTDE-ARRRLEAIYEHQELG 943


>gi|251789258|ref|YP_003003979.1| transcription-repair coupling factor [Dickeya zeae Ech1591]
 gi|247537879|gb|ACT06500.1| transcription-repair coupling factor [Dickeya zeae Ech1591]
          Length = 1150

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/311 (18%), Positives = 115/311 (36%), Gaps = 38/311 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           +  +   Q LLG +TG+      A+++E      +++ P+   A +L  E + F      
Sbjct: 10  LPGKAGEQRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQQFTG---- 65

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                     QP   +P  +T      S +++I   R S    L       ++  V+ + 
Sbjct: 66  ----------QPVITLPDWETLPYDSFSPHQEIISARLSTLYQLPSLTRGTLILPVNTLM 115

Query: 283 GIGSVESYSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                 ++     + LK G  + +  L + L +  Y+  D  +  G F   G  +++FP 
Sbjct: 116 QKVCPHAFLHGHALMLKKGQRLSRDTLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E+  +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + 
Sbjct: 176 GSEE-PFRIDFFDDEIDSLRLFDADTQRTLNEVEHIYLLPAREF----PTDKNAIELFRS 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + + +                     +  + +        IE +          +P P L
Sbjct: 231 QWREQFDVRRDA-------------EHIYQQVSKGTLPAGIEYWQPLFFS----QPLPAL 273

Query: 462 FEYIPEDSLLF 472
           F Y+P  +LL 
Sbjct: 274 FSYLPSGTLLV 284



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     GI    II   P   +     +R   + V  V + +     +
Sbjct: 752 ILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLAVKTFVREYDSLV--VREAMLREILR 809

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          +  T+ L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 810 GGQVYYLYNDVENIDKATQRLSELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 869

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 870 TIIETGIDIPNANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 923


>gi|295689522|ref|YP_003593215.1| transcription-repair coupling factor [Caulobacter segnis ATCC
           21756]
 gi|295431425|gb|ADG10597.1| transcription-repair coupling factor [Caulobacter segnis ATCC
           21756]
          Length = 1155

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 81/465 (17%), Positives = 149/465 (32%), Gaps = 72/465 (15%)

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH-N 220
           K I        L G         MA +  A       +A +   A       K F P   
Sbjct: 6   KQIAKAAGGLTLAGAPEGFDALVMADIARARGGLTAFVARDTARAGAFIDSLKFFAPEIE 65

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-----ERNDCIVV 275
           AV               +P  D         +  +   R S    L       +   +V+
Sbjct: 66  AV--------------LLPSWDCLPYDRIGPSASVSATRMSTLSRLARGLGESKPAILVI 111

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           ++ + +  + + +   +     K+G  V+ K+L +      Y R      RG F + G  
Sbjct: 112 AAHALLQRVPTKDVLLRASYSAKVGGVVDIKDLETYFAVNGYARASTVSERGEFAIRGGV 171

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+++P   E+   R+ +FG+ +E I  F P T +  + ++ I +   S  +     ++  
Sbjct: 172 IDVYPPAAEE-PVRLDLFGDTLESIRAFDPETQRSTKQLKEIDLLPVSEALLDADAISRF 230

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
                   K  + E    G                  +   G    +E++   L  R   
Sbjct: 231 R-------KGYVAEFGAPGD-----------DPLYATVSEGGRRAGLEHWLPLLYERM-- 270

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN--RPL 513
               TLF+Y+P  +L+ VD               D      L  Y  R  +   +  RPL
Sbjct: 271 ---ATLFDYLPAGALIGVD--------HQAAEARDERLSMILDAYEARASADRKSAYRPL 319

Query: 514 RFEEWNCLRPTTIVVSATPGSWEL-EQCQGIIVEQIIRPTGLVDPPVEI---------RS 563
                    P  + ++A     EL ++          +   +VD   ++         + 
Sbjct: 320 P--------PEALYLTAAEWDRELSDRTHRQFTPFQPQGLDVVDLGAKLGRTFAAERAQD 371

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +    E   D     A +G R+L    ++  +E L   L +  ++
Sbjct: 372 SVNLFEATADHARKLAAEGKRVLFASWSEGSSERLGTMLADHGLK 416



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 78/183 (42%), Gaps = 9/183 (4%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     I E  I  T  VD    +R+  +  +   + + +     +
Sbjct: 756 HMLTLTATPIPRTLQMALSGIREMSIIATPPVDRLA-VRTYISPFDPVTLREALLREKYR 814

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V   +  ED+ ++L  +   V+Y+  H ++   +  +++     G++DVL+  
Sbjct: 815 GGQSYYVVPRIKDLEDIEKFLRTQVPEVKYVVGHGQMSATQLEDVMTAFYEGQYDVLLAT 874

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+           + KS+ L
Sbjct: 875 TIVESGLDIPSANTLIVHRADMFGLAQ----LYQIRGRVGRSKARAYAYLTTPVEKSLTL 930

Query: 700 AID 702
           + +
Sbjct: 931 SAE 933



 Score = 40.8 bits (94), Expect = 0.89,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            Y  + DQ +AI  +L+ + S +   +L+ G  G GKT      A V+    +   ++ P
Sbjct: 604 PYEETDDQLSAIHDVLEDLSSGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQVAIVCP 663

Query: 202 NKILAAQLYSEFKNFF 217
             +LA Q Y  FK+ F
Sbjct: 664 TTLLARQHYKTFKDRF 679


>gi|218249019|ref|YP_002374390.1| transcription-repair coupling factor [Cyanothece sp. PCC 8801]
 gi|218169497|gb|ACK68234.1| transcription-repair coupling factor [Cyanothece sp. PCC 8801]
          Length = 1158

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 105/642 (16%), Positives = 206/642 (32%), Gaps = 103/642 (16%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +LL+ ++ +     L GV    K    + + +++    +V+      A +  ++ +   
Sbjct: 17  KELLEKLN-KTGSLGLKGVPRLPKGLVSSALAQSLDNNLLVICATLEEAGRWAAQLEMMG 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
             +   Y  S    Y  EA+ P ++    +             S   S  ++N   +V++
Sbjct: 76  WKSVNFYPTSEASPY--EAFNPESEMIWGQ---------MQVLSILNS--QQNGLAIVTT 122

Query: 278 VSCIYGIGSVES-YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
              +       + +      L+IG +   +E+  +LV+  Y+R  +    G +   GD +
Sbjct: 123 EKALQPHLPPSTVFETYCFNLQIGITKTSQEIDETLVRLGYERVALVETEGQWSRRGDIV 182

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IFP   E +  R+  FG+ +E+I E  P T + +  +E + +   S       TL    
Sbjct: 183 DIFPVSSE-LPIRLEWFGDALEKIRELDPATQRSLDKLEQVILTPTSFNPIIANTLKNKN 241

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
             ++  L                           E  E   +    E  +R L      E
Sbjct: 242 INLQNYLSD-------------------------EEKEGLDNANFPEGMARLLGI--AFE 274

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGM--YRGDFHRKATLAEYGFRLPSCMDNRPLR 514
            P +L +Y+ E++L   DE             Y  D        E    LP    +RP  
Sbjct: 275 QPASLLDYLRENTLCVFDEVEQCQSHSDRWLDYVED-----NWQELDPPLPKI--HRPFS 327

Query: 515 FEEWNCLRPTTIVVSATPGSWEL-EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
                  +   + +S      EL E      ++   RP         I +   Q   + +
Sbjct: 328 ESLKLAKKFPILYLS------ELSEVTDKNALDLSSRP---------IPTTPHQFAKIAE 372

Query: 574 EINLAAQ-------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            +    +             L          L   L E +   +++ ++       +   
Sbjct: 373 ILRGKREIYSGITLNKYSTWLISAQPTRTVSL---LEEHDCPAQFIPNKKDYPGIEKCHI 429

Query: 627 DLRLGKFDVLVGINLLR-EGLDIPECGLVAILDADKEGF-LRSKTSLIQTIGRAAR---- 680
               G    L    +   EG  +P   +V I D +  G  + + +  I+   RAA     
Sbjct: 430 Q---GTAVALKYSGVAELEGFILPTFRIVVITDREFFGQHVLAPSGYIRKRRRAASKQVD 486

Query: 681 ----NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
               N    VI     + K ++L    T      Q E           +     +  D +
Sbjct: 487 LNQLNPGDYVIHKNHGLGKFLKLESLATREYLVIQYE---------DGLLRVPADSFDSL 537

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
                  ++     +   ++ K  +   + +RK +   A +L
Sbjct: 538 SRYRHTGSH---PPELHKMTGKIWEKTKQRVRKSIKKLAVDL 576



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 73/191 (38%), Gaps = 19/191 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I E  +  T    PP   R  +T +     + V   I    
Sbjct: 760 VLTLTATPIPRTLYMSLSGIREISLITT----PPPSRRPIKTHLSSYNPDVVRTAIRNEL 815

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G +I   V      E++   + +     R +  H ++   +    +     G+ D+LV
Sbjct: 816 DRGGQIFYVVPRVEGIEEVAGQIQQMVPSARIVIAHGQMDVNDLEMTMLGFNNGEADILV 875

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + + DA K G L     L   +GR+    ++ ++          
Sbjct: 876 CTTIIESGLDIPRVNTIIVEDAQKFG-LSQLYQLRGRVGRSGIQAHAWLLY-------PN 927

Query: 698 QLAIDETTRRR 708
           +  + ET R+R
Sbjct: 928 KGQLSETARQR 938



 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 17/168 (10%)

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSAR----- 565
           L        +   I    TP   ELE         +Q+     +       R        
Sbjct: 577 LNLYAKRAKKEGFIYPPDTPWQEELEDSFPYQPTPDQLKAVQDVKMDLESDRPMDRLVCG 636

Query: 566 ----TQVEDVYDEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
                + E     I  A   G + +      T+LT++    L E      I +  ++   
Sbjct: 637 DVGFGKTEVAVRAIFKAVTSGHKQVALLAPTTILTQQHYHTLKERFAPYPINIGLLNRFR 696

Query: 617 KTLERIEIIRDLRLGKFDVLVGI-NLLREGLDIPECGLVAILDADKEG 663
            T E+ +I++ L  G+ D++VG   LL + +     GL+ I +  + G
Sbjct: 697 TTSEKKDIVQRLATGELDIVVGTHQLLGQSVKFKNLGLLVIDEEQRFG 744


>gi|238754400|ref|ZP_04615756.1| Transcription-repair-coupling factor [Yersinia ruckeri ATCC 29473]
 gi|238707433|gb|EEP99794.1| Transcription-repair-coupling factor [Yersinia ruckeri ATCC 29473]
          Length = 1148

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 116/298 (38%), Gaps = 37/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE    P +++AP+   A +L  E + F  H                
Sbjct: 22  LTGSACAIECAEIIERHPGPVMLIAPDMQNALRLRDEIQQFTSH--------------HV 67

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
           + +   +T      S ++ I   R S    L      +++  V+ +   +   E      
Sbjct: 68  STLSDWETLPYDSFSPHQDIISARLSCLYQLPSMKRGVIILPVNTLMQRVCPHEFLHGHA 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + ++ G  + + +L + L +  Y+  D  +  G F   G  ++++P   E+  +R+  F 
Sbjct: 128 LVMEKGQHLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEE-PYRIDFFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ +  F   + + +  V+ I +     +         A++  + + + +        
Sbjct: 187 DEIDSLRVFDVDSQRTLTEVDHINLLPAHEFPID----QAAIELFRSQWREQ-------- 234

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
              E +R  + I    + +        IE +      ++     P+LF Y+P+++LL 
Sbjct: 235 --FEVRRDPEHI---YQQVSKGIWPAGIEYWQPLFFSQSL----PSLFSYLPDNTLLV 283



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREVLR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E  T+ L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKATQRLAELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 922


>gi|134095113|ref|YP_001100188.1| transcription-repair ATP-dependent coupling factor [Herminiimonas
           arsenicoxydans]
 gi|133739016|emb|CAL62064.1| Transcription-repair-coupling factor (TRCF) (ATP-dependent helicase
           Mfd) [Herminiimonas arsenicoxydans]
          Length = 1148

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 78/455 (17%), Positives = 150/455 (32%), Gaps = 57/455 (12%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ---RPAIVMAPNKILAAQLYSEFKN 215
            L K +       +L  V GS   + +A+    ++   R   V+  N   A +L +E   
Sbjct: 4   DLKKSLPKPASRFVLPAVHGSADAYVLAQAAAELKSQKRMLAVVVANASDAQRLLAE--- 60

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIV 274
                 + +F            +P  +T      S ++ +   R +    +L      ++
Sbjct: 61  ------IPWFTGEGQEKPRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVLNGQCDVLI 114

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           V + + +  +      +      K G+ +++ +L + L    Y      +  G + V G 
Sbjct: 115 VPATTALVRMAPPAFLASYTFFFKQGEKLDEAKLKAQLQLAGYSPVKQVMSPGEYSVRGG 174

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I+IFP     + +R+ +FG+ I+ I  F   T + +  V  +++     +        T
Sbjct: 175 LIDIFPM-GAVLPYRIDLFGDTIDTIRTFDADTQRSLYPVREVRLLPAREFPMDEEARTT 233

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
                              GR  E    +   +   + + +  +   IE Y         
Sbjct: 234 F-----------------RGRWREIFEGDPSRSMIYKDIGSGIASAGIEYYLPLFF---- 272

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
            E   TLF+Y+P D+   +         I   +     R + L             RPL 
Sbjct: 273 -EETKTLFDYLPPDTTFALVGD--IDEAIRRFWSDTQSRYSFL--------KSDRERPLL 321

Query: 515 FEEWNCLRPTTIVVSATP-GSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVEDVY 572
             E   L        A P G W       I  E +        P + + R A   + ++ 
Sbjct: 322 APEQIFLSDENFFTLAKPFGRW------VIQSEDVASELSASLPNIAVNRRADDPLVNLR 375

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
             +    +   R+L+   +    E L +Y  E N+
Sbjct: 376 SWLLQTDK---RVLICAESNGRRETLQQYFNEYNL 407



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 20/198 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    II   P   +     +RS    V  + +      ++
Sbjct: 756 VLTLTATPIPRTLGMALEGLRDFSIIATAPQKRLAIKTFVRSENASV--IREACLRELKR 813

Query: 582 GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E+    L E + E  I V   H ++   +   I+RD    +F++L+
Sbjct: 814 GGQVYFLHNEVETIENRKAMLEELMPEARIGVA--HGQLHERDLERIMRDFVAQRFNILL 871

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +     YA  +   +
Sbjct: 872 CTTIIETGIDVPTANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLVHDV 924

Query: 698 QLAIDETTRRRE--KQLE 713
           Q       RR +  +Q+E
Sbjct: 925 QGLSKLAQRRLDAIQQME 942


>gi|145593442|ref|YP_001157739.1| transcription-repair coupling factor [Salinispora tropica CNB-440]
 gi|145302779|gb|ABP53361.1| transcription-repair coupling factor [Salinispora tropica CNB-440]
          Length = 1216

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 25/246 (10%)

Query: 181 KTFTMAKVIEA-----MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + F +A V          RP + +      A  L     +  P + V  F S+ +    E
Sbjct: 41  RPFAVAAVAADEPVGGAGRPVLAVTATSREAEDLAVALGSLIPADQVAVFPSW-ETLPHE 99

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLER--NDCIVVSSVSCI-----YGIGSVE 288
              PR+DT   + +     + R+ H        R     +VV+ V  +      G+G +E
Sbjct: 100 RLSPRSDTVGRRLAV----LRRLAHPEATDAQGRSGPLRVVVAPVRSLLQPQLKGLGELE 155

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                   L  GD  + +++   L    Y R D+   RG F V G  +++FP   ++   
Sbjct: 156 PVR-----LSAGDEADLEDVARRLTDMAYARVDLVTKRGEFAVRGGILDVFPP-TDEHPS 209

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE--ELKMR 406
           RV  +G+++EEI  F     + I  V+ +        +   P    A     E  EL   
Sbjct: 210 RVEFWGDEVEEIRTFAVADQRTIELVDQLWAPPCRELLLTPPVRKRAAVLAAEYPELAEI 269

Query: 407 LIELEK 412
           L  L +
Sbjct: 270 LDRLAE 275



 Score = 45.9 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 50/149 (33%), Gaps = 11/149 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     T    PP E     T V       V   I+   
Sbjct: 806 VLSMSATPIPRTLEMAITGIREMSTIAT----PPEERHPVLTAVGAYDERQVAAAIHREL 861

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     L E     R    H ++       ++      +FDVL+
Sbjct: 862 LRDGQVFYLHNRVESIERAARRLRELVPEARVAVAHGQLGEEALERVMVGFWEKEFDVLI 921

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLR 666
              ++  G+DIP    + +  AD  G  +
Sbjct: 922 CTTIVESGIDIPNANTLIVERADLLGLAQ 950


>gi|288958061|ref|YP_003448402.1| transcription-repair coupling factor superfamily II helicase
           [Azospirillum sp. B510]
 gi|288910369|dbj|BAI71858.1| transcription-repair coupling factor superfamily II helicase
           [Azospirillum sp. B510]
          Length = 1171

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 82/516 (15%), Positives = 164/516 (31%), Gaps = 56/516 (10%)

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           MA +    A L      F P   V  F ++ D    +   P       +  ++   I R 
Sbjct: 1   MALDDTRCALLAEALAFFAPKLEVLTFPAW-DCLPYDRVSPNGGIVARRIDTLTRLIAR- 58

Query: 259 RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           R +A+         ++ +  + +  +    ++   +   K+ D ++ ++L   L    Y 
Sbjct: 59  REAASNRDGLAPLIVLTTVNAVVQKVPPRSAFKDAVFSAKLRDRIDLEKLQRYLAGNGYT 118

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R       G F V G  +++FP   E+   R+ +FG+++E +  F P+T +     E ++
Sbjct: 119 RAQTVREPGEFAVRGGIVDLFPPGSEE-PLRLDLFGDELEGVRAFDPMTQRTTDKRERVE 177

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
           +   S        +             R    E  G + +   L        E +    S
Sbjct: 178 LKPMSEVFLDDAGIARF----------RSGYRELFGAVTDDDPL-------YEAISAGRS 220

Query: 439 CQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
              +E++          E   T+ +Y+P   +    +++ +              + ++ 
Sbjct: 221 YGGMEHWLPLFH-----ESMDTVLDYLPRGIVSLDHQANESRDARIAQVVDFHASRDSMM 275

Query: 499 EYGFRL------PSCMDNRPLRFEEWNCL-----RPTTIVVSATPGSWELEQCQGIIVEQ 547
               R       P  + +  L    W+ L          + S  PG        G     
Sbjct: 276 TIEKRAGSPVYKPVPVASMFLDSTGWDALLAERAVAQLQIFSTPPGIKGTVDAGGKRGHD 335

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
                         R      + V D I      G R+L+   +    + L+  L +  I
Sbjct: 336 FAEERN--------RPDMNVFDAVKDHIRALRADGRRVLIAGYSAGSRDRLSNVLADHGI 387

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
                   ++  E +E +R    G    +V    +  G   P+  L  I + D  G    
Sbjct: 388 P------GLEPAESMEDVRRFDRGVIGTIVLG--MEHGFTAPD--LAVITEQDILGDRLV 437

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
           + +  +   +AA  +     L+   I   +   I  
Sbjct: 438 RPAKKKR--KAANFIAEHSALHEGDIVVHMDHGIGR 471



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 11/182 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
             + ++ATP    L+     + E  +  T  VD       +      V  + + I     
Sbjct: 728 HVLTLTATPIPRTLQMALSGVRELSLIATPPVDRLAVRTFVLPYDPVV--IREAILREHY 785

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G +             + E + E    V+ +  H ++   E  +++     GKF+VL+ 
Sbjct: 786 RGGQTFYVCPRIEDLAKVAERVRELVPEVKIVTAHGQMAASELEDVMTAFDEGKFEVLLA 845

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            N++  GLDIP    + +  AD  G  +    L Q  GR  R+             K + 
Sbjct: 846 TNIIESGLDIPNANTLIVHRADLFGLAQ----LYQIRGRVGRSKKRGYAYLTYAPNKPLN 901

Query: 699 LA 700
             
Sbjct: 902 AT 903



 Score = 38.5 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 6/166 (3%)

Query: 83  SISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ 142
             ++   +      Q     V+   RL      LLK        ++  +         F 
Sbjct: 515 DANVQLDKLGGAGWQGRKARVK--KRLKDMAEALLKIAAERMLKKADPVLTPEGVYQEFA 572

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIV 198
            +  Y  + DQ  AI  +   + S     +L+ G  G GKT      A ++    +   V
Sbjct: 573 ARFPYPETDDQLKAIEDIFTDLGSGRPMDRLVCGDVGFGKTEVALRAAFMVAMSGKQVAV 632

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           + P  +LA Q +  F + F    V            E  + + +  
Sbjct: 633 VVPTTLLARQHFRTFSSRFAGLPVRVVQLSRMVTAREQTLVKKELA 678


>gi|83745897|ref|ZP_00942954.1| Transcription-repair coupling factor [Ralstonia solanacearum UW551]
 gi|83727587|gb|EAP74708.1| Transcription-repair coupling factor [Ralstonia solanacearum UW551]
          Length = 1206

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 85/528 (16%), Positives = 172/528 (32%), Gaps = 79/528 (14%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAP-NKILAAQLYSEFKNFFPHN 220
           +   ++  +  G+ GS     +A+ +E  +   P + +   N + A +L  E + F P  
Sbjct: 75  VKPGQRF-VFSGLQGSADALLLARYLEQHRATAPMLAVVCANAVDAQRLADELRWFAPQA 133

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVS 279
            V+              +P  +T      S ++ +   R +    L       ++V + +
Sbjct: 134 RVKL-------------LPDWETLPYDNFSPHQDLISERLATLHDLQGGACDLLLVPAST 180

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
            +  I      +      K G+ +++  L +      Y+     +  G + V G  I++F
Sbjct: 181 ALQRIAPPSFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLF 240

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P     + +R+ +FG++IE I  F P T + +  V  +++     +              
Sbjct: 241 PM-GSPMPYRLDLFGDEIETIRAFDPDTQRSLYPVNEVRLLPGREFPMDE---------- 289

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
                  +      GR  E    +       + +        IE Y          E   
Sbjct: 290 -------VARTAFRGRWREVFEGDPTRAPIYKDIGNGVPSAGIEYYLPLFF-----EETA 337

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519
           TLF+Y+P  + L +      I      +  D  ++     +         +RPL      
Sbjct: 338 TLFDYLPATAHLALVGD---IEAAVRRFWADTTQRYNFMRHDR-------DRPLLAPPAL 387

Query: 520 CLRPTTIVVSATP-GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
            L      V+A P     L    G     +  P   V+   E        + + +     
Sbjct: 388 YLDEEAFFVAAKPHARLVLRAEAGDAPLSLPLPNVAVNRRAE--------DPLVNLEAFL 439

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +   R+++   +    E L + L         +H E      +    DL  G+   ++G
Sbjct: 440 MRGNCRVMICAESAGRRETLAQMLAASG-----LHPEG-----VADCADLMGGEARFVLG 489

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +  L +G          IL  ++  F+       Q + R+ R    + 
Sbjct: 490 VAPLYQGF---------ILGDERIAFITETELYAQAVRRSGRRKQEQA 528



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 20/198 (10%)

Query: 525  TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
             + ++ATP    L    +G+    +I   P   +     +R     V  + + I    ++
Sbjct: 815  VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDSV--LREAILRELKR 872

Query: 582  GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            G ++          E+    L E + E  + V   H ++   E   ++RD    + ++L+
Sbjct: 873  GGQVYFLHNEVETIENKRAKLEELVPEARVAVA--HGQMHERELERVMRDFVAQRANILL 930

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +    
Sbjct: 931  CTTIIETGIDVPTANTILIHRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLVHDA 983

Query: 698  QLAIDETTRRRE--KQLE 713
            +    +  RR E  +Q+E
Sbjct: 984  EGLTKQAQRRLEAIQQME 1001


>gi|254226050|ref|ZP_04919649.1| transcription-repair coupling factor [Vibrio cholerae V51]
 gi|125621433|gb|EAZ49768.1| transcription-repair coupling factor [Vibrio cholerae V51]
          Length = 1155

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 111/299 (37%), Gaps = 38/299 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+     +A++  A     ++  P+   A +L  E    F H+ V  F  + +    +
Sbjct: 24  LHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEV-EQFSHSEVALFPDW-ETLPYD 81

Query: 236 AYVPRTDTYIEKESSINEQIDRM-RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
            + P  D        I+++I R+ R  +           +V   + +      +   Q  
Sbjct: 82  NFSPHQDI-------ISDRISRLYRLPSLT-----RGITIVPVSTLLQRQSPRDFLLQHT 129

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  F 
Sbjct: 130 LIVKRGDHFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDFFD 188

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P   + I  ++ I++     +    PT   A++  +   + R        
Sbjct: 189 DEIDTIRTFDPDNQRSIAEMDEIRLLPAHEF----PTTAAAIEEFRNRWRQR-------- 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
              EA+R  + +      +        IE +          E   TLF+Y+P +S L V
Sbjct: 237 --FEARREPESV---YSQVSKGTWPAGIEYWQPLFF-----EHSETLFDYLPANSQLLV 285



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 94/269 (34%), Gaps = 27/269 (10%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
             + ++ATP    L      + +  I  T        I++   Q ED  + + +     +G
Sbjct: 756  ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSEDSVIREAVLREIMRG 814

Query: 583  LRILLT---VLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++      V T    A DL + + E  I V   H +++  E  +++ D    +F++LV 
Sbjct: 815  GQVYFLHNQVETIDKVAADLEKLVPEARITVA--HGQMRERELEKVMNDFYHQRFNLLVC 872

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I 
Sbjct: 873  TTIIETGIDVPTANTIIMDRADSLGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAIT 928

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
               D   R        +        +   +I    + +  E +           + + ++
Sbjct: 929  K--DAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQ 986

Query: 759  KGKAH-------LKSL-----RKQMHLAA 775
              +A        L  L       +M L A
Sbjct: 987  AVEALKSGKEPALDDLLREQTEVEMRLPA 1015



 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A   G ++ + V T    ++  E+  +      IRV  +       E+
Sbjct: 638 GKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQ 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            +I++D+  GK D+LVG + LL   +   + GL+ + +  + G  + +        +A R
Sbjct: 698 KQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKV------KAMR 751

Query: 681 NVNSKVILYADTITKSIQLAID----------ETTRRREKQ-LEHNKKHNINPQSVKEKI 729
                + L A  I +++ +A+              RR   +      + ++  ++V  +I
Sbjct: 752 ADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREI 811

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
           M       L +   T   + A    L     +A +     QM      L 
Sbjct: 812 MRGGQVYFLHNQVETIDKVAADLEKLVP---EARITVAHGQMRE--RELE 856



 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 76  GEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDN----PLLKNGKIWTPHRSWSI 131
                 S  S   ++  ++ +      V+A  +  +        LL           +  
Sbjct: 529 SSLNLISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKF 588

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAK 187
           +   +    F+    +  + DQ  AI  +L  +  ++   +L+ G  G GKT      A 
Sbjct: 589 HLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAF 648

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           V     +   V+ P  +LA Q +  F++ F +
Sbjct: 649 VATDNGKQVAVLVPTTLLAQQHFENFRDRFAN 680


>gi|229021662|ref|ZP_04178248.1| Transcription-repair-coupling factor [Bacillus cereus AH1272]
 gi|228739637|gb|EEL90047.1| Transcription-repair-coupling factor [Bacillus cereus AH1272]
          Length = 1010

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 79/461 (17%), Positives = 165/461 (35%), Gaps = 40/461 (8%)

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           +    G F + G  ++I+P   E++ +R+  F  +++ I  F     +     E++K   
Sbjct: 1   MVEAPGEFSLRGGILDIYPL-TEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVKFGP 59

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            + ++  +  L   +K+++E L   + +L  +        + + +++++EML+   S + 
Sbjct: 60  ATEFLFSQEELKLGIKHLEEGLTKTMQKLSDDKLKTT---VLETVSHEIEMLKNGQSIEQ 116

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           +  Y            P +L +Y+PED ++ +DE        S +   +     +L   G
Sbjct: 117 MFKYLSIFYK-----EPASLIDYLPEDGVVILDEISRIQETASHLETEEAEWYISLLGEG 171

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
             +     +    FEE+   +  +  V  T     +       +  +   T        +
Sbjct: 172 TIIQDL--SFSHSFEEFLHHKKRS-FVYLTLFLRHIAHTHPQNIVNVTCKT--------M 220

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           +    Q++ +  EI+   +     ++        + L   L + +I       ++     
Sbjct: 221 QDFHGQMQLLKTEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDIEA-----DI----- 270

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG---RA 678
           +E    L  G+  + V    L  G ++P   LV I + +       K+   Q +    R 
Sbjct: 271 VEATDILLPGRLQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVKKSQRKQKLSNAERI 328

Query: 679 ARNVNSKVILYADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
                 KV  Y   +   I   +  ET    E    H    NI  Q   +K+   I+ I 
Sbjct: 329 KSYSELKVGDYVVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQG-NDKLYVPIEQID 384

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
                  +   D +   L     K     + K +   AD+L
Sbjct: 385 QVQKYVGSEGKDPKVYKLGGNDWKKVKTKVEKSVQDIADDL 425



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 608 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 667

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 668 QIYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTI 727

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 728 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 779

Query: 702 DETTRRREKQLEHNKKHN 719
            E   RR + ++   +  
Sbjct: 780 SEVAERRLQAIKEFTELG 797


>gi|89094300|ref|ZP_01167241.1| transcription-repair coupling protein Mfd [Oceanospirillum sp.
           MED92]
 gi|89081359|gb|EAR60590.1| transcription-repair coupling protein Mfd [Oceanospirillum sp.
           MED92]
          Length = 1150

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 78/487 (16%), Positives = 159/487 (32%), Gaps = 67/487 (13%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           V G+     ++   +      +V+  + + A +L  E   F     +   +S+       
Sbjct: 21  VHGAATGLLISDATKRFDGFTLVITKDTLEANRLLDEVNFFSADEKIGEILSF------- 73

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMI 294
              P  +       S ++ I   R S    L    + I+++ +S +    +   + +   
Sbjct: 74  ---PDWEILPYDTFSPHQDIISERISTLNRLPSLKNGILIAPLSTLMHRTAPADFIAGNC 130

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             +KIGD++    L   L    Y   +  +  G + + G  I++FP+  E   +R+ +F 
Sbjct: 131 FDIKIGDTINPDALRKQLTDAGYHAVETVLEHGEYAIRGSIIDLFPTGSE-HPFRIELFD 189

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           N+IE +  F P + + I  +E I +     +       + A+   K   + R        
Sbjct: 190 NEIETLRTFDPESQRSIEKIEAINLLPAKEFPFD----SRAISNFKARWRERFD------ 239

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  ++ R       +    +   IE Y          +   ++F  +PE S + VD
Sbjct: 240 -------VDYRQCPIYTNISDGLTSPGIEYYLPLFF-----DDSSSIFASLPEKSQIIVD 287

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
               T+     ++  +   +     Y    P               L P  + ++     
Sbjct: 288 ---STLEDAVALFTKEVEERYEQRRYDITNP--------------VLTPQELFLTTDQLF 330

Query: 535 WELEQCQGIIV--EQIIRPTGLVD---PPVEIRSARTQVEDVYDEIN-LAAQQGLRILLT 588
            EL++   +    E I   +G  +            +Q ++    +      +   IL  
Sbjct: 331 AELKKHGRLTYTAESIEEKSGRTNIDCNEAPNLPVDSQHKEPLTALQNFLMNRDGPILFC 390

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
             +    E L E L   NI+   ++                 G  D+ +    L +GL  
Sbjct: 391 AESAGRREALLELLGRINIKPSLVNG----------WNAFIKGDEDLAITEYPLEQGLSF 440

Query: 649 PECGLVA 655
           P    V 
Sbjct: 441 PGQYHVI 447



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 90/247 (36%), Gaps = 14/247 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     GI    II   P   +     +R + T +  V + I     +
Sbjct: 754 ILTLTATPIPRTLNMAMSGIRDLSIIATPPAKRLSVKTFVRHSDTTL--VKEAILRELLR 811

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++       +  E   E L E     R    H +++  E  +++ D    ++++L+  
Sbjct: 812 GGQVYYLHNEVKSIEKTAEELSELVPEARIGIGHGQMRERELEQVMSDFYHKRYNILLCT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           KS+  
Sbjct: 872 TIIETGIDVPNANTIIIDRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPHKKSMTK 927

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             D   R    +   +        +   +I    + +  E +        +  + + ++ 
Sbjct: 928 --DAIKRLEAIESADDLGAGFTLATHDLEIRGAGELLGEEQSGQMQTVGFSLFMEMLEQA 985

Query: 760 GKAHLKS 766
            ++ +K 
Sbjct: 986 VES-IKE 991



 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 4/102 (3%)

Query: 125 PHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTF 183
               +  ++  +    F     +  + DQ AAI  +++ + +++   +L+ G  G GKT 
Sbjct: 580 AREGFQFSSPDEQYLQFASTFPFEETPDQAAAIGNVIRDMTAKQPMDRLVCGDVGFGKTE 639

Query: 184 T---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
                A V     +  +++ P  +LA Q Y  F + F    V
Sbjct: 640 VAMRAAFVAAQSGKQVVILVPTTLLAQQHYQNFLDRFADWPV 681


>gi|325578622|ref|ZP_08148722.1| transcription-repair coupling factor [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325159858|gb|EGC71988.1| transcription-repair coupling factor [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 1149

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 93/536 (17%), Positives = 190/536 (35%), Gaps = 76/536 (14%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V  S     ++++ E      +V+  +   A +L        P    
Sbjct: 14  IPTQPNDHKILGNVLASADALAVSEIAEQYDGLTVVVTQDTKSAVRL----SQVLPD--- 66

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                     QP  + P  +T      S +++I   R SA   L      I V  +S + 
Sbjct: 67  -------LTSQPVQFFPDWETLPYDSFSPHQEIISSRLSALFHLQNTKKGIFVLPISTLM 119

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K  D +  ++L   L    Y+  +  +  G + V G  +++FP 
Sbjct: 120 QRVCPPKYLQHNVLLIKKDDRLVIEKLRLQLESAGYRSVEQVLEHGEYAVRGSLLDLFPM 179

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  +++I +     +    PT   ++++ + 
Sbjct: 180 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLDEIQSINLLPAHEF----PTDEKSIEFFRT 234

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +              TL
Sbjct: 235 QFRETFGEIRRDPEHIYQQ------------ISKGTLISGIEYWQPLFFDEM-----ATL 277

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
           F+Y+PE +L    E++    Q    Y     R                 RPL       L
Sbjct: 278 FDYLPEKTLFVDMETNQ--AQGERFYLDAKQRYEHR--------KVDPMRPL-------L 320

Query: 522 RPTTIVVSATPGSWELEQCQGIIV--EQIIRPTGLVDPPVEIRSA---RTQVEDVYDEIN 576
            P  + +S    +  L+    I    E++       +  V    A   ++Q ++   ++ 
Sbjct: 321 PPERLWLSIDAVNHALKNYPKINFKAEKVRSSVRQKNLAVSALPAVTIQSQQKEPLSQLR 380

Query: 577 LAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              +     +L +V T+   E L + L    I+           ++I+ + +    KF++
Sbjct: 381 QFIEHFKGNVLFSVETEGRRETLVDLLSPLKIK----------PKQIKTLSEANQDKFNL 430

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
            V    L +G  + E  L  I + +  G    +    Q   R A N ++ V   A+
Sbjct: 431 WVS--RLEQGFILDEAKLAVITEHEILG---ERVQQRQRDKRKAVNPDTLVRNLAE 481



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 71/189 (37%), Gaps = 12/189 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      V I++   Q +D+   + I     +G
Sbjct: 756 ILTLTATPIPRTLNMAMNGIRDLSIIAT-PPARRVSIKTFVRQKDDLIIREAILREILRG 814

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++  E   ++ D    +++VLV   
Sbjct: 815 GQVYYLHNDVASIENTAEKLTALVPEARVVIGHGQMRERELERVMSDFYHQRYNVLVCST 874

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +   
Sbjct: 875 IIETGIDVPTANTIIIERADNFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKLMTK- 929

Query: 701 IDETTRRRE 709
             +  RR E
Sbjct: 930 --DAKRRLE 936


>gi|326385186|ref|ZP_08206853.1| transcription-repair coupling factor [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326196090|gb|EGD53297.1| transcription-repair coupling factor [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 1193

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 21/248 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           AA  QL + I    + +L +    + + F +A++ E  + P +V+  N   A  L +E  
Sbjct: 17  AAFGQLRERI---GQARLDITAPDAARPFVVAQLAEVSEHPVLVVTANGREADDLTTELA 73

Query: 215 NFFPHNA-----VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER 269
              P  A     V  F S+ +    E   P  DT   + + ++    R+   +   L   
Sbjct: 74  ELLPCGAGGTPVVAQFPSW-ETLPHERLSPSADTVGARLAVLS----RLADPSVAPLR-- 126

Query: 270 NDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
              +V+++V  +    +        V L  G   E   L+  LV+  Y+R D+   RG F
Sbjct: 127 ---VVIATVRSLVQPMAPGLGGMRAVTLTEGSEAEFDALIEKLVEMAYERVDMVGARGEF 183

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET--IKIYANSHYVT 387
            V G  ++IFP    D   RV  +G++I +I  F     +    ++T  ++I+     V 
Sbjct: 184 AVRGGILDIFP-TTADYPVRVEFWGDEITDIRAFSVADQRTQPEIDTSVVQIHPCRELVL 242

Query: 388 PRPTLNTA 395
                  A
Sbjct: 243 TAGVRERA 250



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 69/202 (34%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + ++ PP E     T V     + V   I    
Sbjct: 789 VLTMSATPIPRTLEMSMAGIREM----STILTPPEERHPVLTYVGAYSDKQVAASIRREL 844

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +   +++       R +  H ++   +    ++     ++DVLV
Sbjct: 845 LRDGQVFYVHNRVSTIDKTAKHIANMVPEARVVVAHGQMGEEQLERTVQGFWDREYDVLV 904

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  A+  G  +    L Q  GR  R+          +  K  
Sbjct: 905 CTTIIETGLDISNANTLIVDRAENFGLSQ----LHQLRGRVGRSRERGYAYLLYSPDKP- 959

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N +  
Sbjct: 960 ---LTETAYDRLATIAQNNELG 978



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 5/109 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A Q G ++ + V T     +  +  TE +    ++VR +       E 
Sbjct: 671 GKTEIAVRAAFKAVQDGKQVAVLVPTTILAGQHLQTFTERMDGFPVKVRGLSRFTDPAES 730

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKT 669
            EII  +  G+ DV++G + LL+ G+   + GLV + +  + G    + 
Sbjct: 731 KEIIAQMASGEVDVVIGTHRLLQTGIRWKDLGLVIVDEEQRFGVEHKEH 779


>gi|297569280|ref|YP_003690624.1| transcription-repair coupling factor [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925195|gb|ADH86005.1| transcription-repair coupling factor [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 1179

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 76/499 (15%), Positives = 158/499 (31%), Gaps = 55/499 (11%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            QL   +        + G+ G G    +A  I  + RP + + P++  + +L  + + F 
Sbjct: 2   KQLYNALEQSPTPIEIYGLRG-GAAAWLAGRISELNRPLLCLCPDEEESQRLAGDLELFS 60

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
               + Y       Y P    P         ++    + R+  SA     E    +V + 
Sbjct: 61  HRPVIHYPDLEIPPYAPLQPDPAI------IAARLAALYRV-LSA-----EEPFILVAAG 108

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            + ++          +   L  G+  + ++L   L    Y+        G + V G  I+
Sbjct: 109 PALLHKTMPPARLGNLAELLLGGEETDSRQLQERLAGGGYEAVAQVREVGEYSVRGGIID 168

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH--YVTPRPTLNTA 395
           IFP    D   R+  FG+ +E +  F P + + +  V+   +   S   Y       + A
Sbjct: 169 IFPPGR-DFPLRLDFFGDMVESLRYFDPSSQRSLGQVDEAILLPASDILYPAADSPGHRA 227

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +      L        +     E++RL        + L++         +          
Sbjct: 228 LLQRFRHLSEEYQWHRE-----ESKRL-------TDCLQSRRHFAGSSFFLPLFQPEA-- 273

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
               ++  Y+P  +++   + H  + Q   +                 + +         
Sbjct: 274 ---VSVLSYLPAGTMVLCLD-HPRLQQGLELQEARIEANYQ------EMQAAAKPALPPA 323

Query: 516 EEWNCLRPTTIVVSATPGS--WELEQCQGIIVEQIIRPTG---LVDPPVEI-RSARTQVE 569
           E +         +   PG+  + L   +          TG   L+   +++ R     + 
Sbjct: 324 ELFVNRAEILKRLETLPGARLYPLPPAEADQQRSFAVGTGNHVLLKQELDLQRRTEGLLT 383

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   I    +Q  R+ L   ++R A  + + L    +  R     V    R     D  
Sbjct: 384 PLVRRIKQWQEQQERVRLACRSERHARQMAQMLASHGLECRV----VPPPCRESATAD-- 437

Query: 630 LGKFDVLVGINLLREGLDI 648
               ++L+    L  G D+
Sbjct: 438 ---PNLLLTTAPLSSGFDL 453



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 79/196 (40%), Gaps = 12/196 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L+    + V  +   +   +    +++   + +D+   + I+    + 
Sbjct: 766 VLTLTATPIPRTLQLS-LLGVRDLSVISSPPNLRRTVKTFVARHDDLVIREAIHREMGRD 824

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++ +         ++   + +     R    H ++   +  EI+      + +VLV   
Sbjct: 825 GQVFIVHNRVSSIHEVAAKVQKLVPEARVAVAHGQMPGKQLEEIMVRFVRREINVLVCTT 884

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  GLDIP    + I  AD+ G L     L   +GR++R        YA  +  ++   
Sbjct: 885 IIESGLDIPSANTIIITRADRLG-LAEIYQLRGRVGRSSRQA------YAYLLVPALDDL 937

Query: 701 IDETTRRREKQLEHNK 716
             E  RR +  +++N+
Sbjct: 938 AGEARRRLQALMDYNE 953


>gi|183601453|ref|ZP_02962823.1| transcription-repair coupling factor [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|241191047|ref|YP_002968441.1| transcription-repair coupling factor [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196453|ref|YP_002970008.1| transcription-repair coupling factor [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183219059|gb|EDT89700.1| transcription-repair coupling factor [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|240249439|gb|ACS46379.1| transcription-repair coupling factor [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240251007|gb|ACS47946.1| transcription-repair coupling factor [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|295794036|gb|ADG33571.1| transcription-repair coupling factor [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 1194

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 79/469 (16%), Positives = 162/469 (34%), Gaps = 59/469 (12%)

Query: 152 DQPAAIAQLLKG-IHSREK--VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           DQ  A A L++G + + E     +L+G     +    A    A ++P +++ P+   A  
Sbjct: 37  DQ--AFAGLVEGHVDAGEDADPSILVGAPNGIRPALAAA--SADRKPVVIVVPSGREAED 92

Query: 209 LYSEFKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           L  + ++++  +  E      ++    E   PR DT   +  +      R+ H  + S +
Sbjct: 93  LVGDLRSWYDGDPNEVAQLMAWETLPHERLSPRADTVANRMETF----YRLCHPQSDSEM 148

Query: 268 ERNDCIVVSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
                I+V  V  +      GIG V+           G+ +  ++ +  LV+  Y R D+
Sbjct: 149 FGPIRILVMPVRSLIQPVVAGIGDVKPLVFAQ-----GEEITLEDAVQGLVRNSYTRVDL 203

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIKIYA 381
            + RG F V G  I++F    E    R+  FG++I+ I  F+    +     + ++    
Sbjct: 204 VMDRGEFAVRGGIIDVFVP-TEPHPVRIEFFGDEIDTIRRFHSSDQRTYGEPIRSVWATP 262

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
                        A   I              G++  A  L + I   +         + 
Sbjct: 263 CRELQLTEGIRERAQSLI--------------GQIPNADDLLESIANAIPQ-------EG 301

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLA 498
           +E+    L      EP  ++    P D ++ + +       +  +             +A
Sbjct: 302 MESLIPALVDDL--EPVSSML---PRDCIVMLFDPERLRRAVDDLMKTANEFLATSWHVA 356

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
             G    + +      F + + +            + EL +  G  V+Q +     +D  
Sbjct: 357 ASGHGAGAPISFEAANFLDLDEVVGQLTY-----SNHELWKVSGFTVDQSLPGHVQIDA- 410

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           V  +      E   D +    ++   +++T   +     L   L E  +
Sbjct: 411 VAPQDLHGSGEKAEDHLGELIRKDYAVVITAAAQGTLSRLKRMLNEIGV 459



 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 71/201 (35%), Gaps = 17/201 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 795 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAIRRELLRG 853

Query: 583 LRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++          E+    L + + E  I +   H ++   +  +IIRD      DVL+ 
Sbjct: 854 GQVFYIHNRVEGIEEKAKRLQDLVPEARIGIA--HGKMGRKQLDQIIRDFWHRDIDVLLC 911

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  GLDI     + +  AD+ G  +    L Q  GR  R  +     +    +K + 
Sbjct: 912 TTIVETGLDISNANTLIVDRADRFGLSQ----LHQLRGRVGRGRDRAYAYFLYDPSKPM- 966

Query: 699 LAIDETTRRREKQLEHNKKHN 719
               E +  R   +  N    
Sbjct: 967 ---TEQSHERLVTIAQNTALG 984


>gi|291533464|emb|CBL06577.1| hypothetical protein MHY_18240 [Megamonas hypermegale ART12/1]
          Length = 380

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/316 (17%), Positives = 118/316 (37%), Gaps = 31/316 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + ++ +  +       + G+ G+ K   +A   +   +  I++  N+    + Y++F + 
Sbjct: 14  LTKINECFNQDYGQNYIYGLAGTQKHIVIANAYKQNPKTTIIITHNQDGVEEWYNDFSSL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV- 275
            P  ++               +P  D      ++ + ++   R      L  +   I++ 
Sbjct: 74  LPEASIW-------------ELPALDVMSVSATAKSLELKAKRMKILGMLTRKEPVIILA 120

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           ++ + +    S + +    VQ+++    E  ++L  LV   Y+R D     G     G  
Sbjct: 121 TTNAAMQKDMSRQDFENSSVQIELNKEYEHDKILEQLVSLGYERVDKVEQIGQCSARGGI 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL--- 392
           I+I+P +  D   R+  F ++IE I EF   + + +RN+   +I                
Sbjct: 181 IDIYPINS-DTPIRIEFFDSEIESIREFAIDSQRSLRNIAKCEILPLMQMDDTGSPAIFL 239

Query: 393 ---NTAMKYIKEE---LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
              N     I +E   LK  +      G + E   +++ + YD   + T+    +I  Y 
Sbjct: 240 SYLNKDCNVILDEPLHLKEAVE-----GSIKENPEIKEFV-YDWNYILTSAKKHNI-IYM 292

Query: 447 RYLTGRNPGEPPPTLF 462
             +  R     P  L 
Sbjct: 293 SLMMQRIADTEPEQLI 308


>gi|220912069|ref|YP_002487378.1| transcription-repair coupling factor [Arthrobacter chlorophenolicus
           A6]
 gi|219858947|gb|ACL39289.1| transcription-repair coupling factor [Arthrobacter chlorophenolicus
           A6]
          Length = 1220

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 99/585 (16%), Positives = 184/585 (31%), Gaps = 104/585 (17%)

Query: 101 PSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQL 160
           P++  L R +  D    +         +    +       +Q+     P+G +P  +A++
Sbjct: 11  PTLDGLRRALAPDQSFARVRAEAGRGFAVRGQD-------YQISA---PAGLRPVLLAEM 60

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
             G+ +    Q      G                  + +      A  L +  + + P +
Sbjct: 61  ADGLAAAAAGQEGAADPG----------------VVLAVTATGREAEDLAAALRAYLPAD 104

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH---SATRSLLERNDCIVVSS 277
           +V  F S+ +    E   PR+DT   + S     + R+ H   S    L      +    
Sbjct: 105 SVAEFPSW-ETLPHERLSPRSDTVGRRLSV----LRRLAHPESSTAERLRVVVAPVRAVV 159

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
              + G+G +         LK+G  V   +++ SL    Y R D+   RG F V G  I+
Sbjct: 160 QPVVAGLGDLVPV-----TLKVGQDVPFTDVVRSLADAAYARVDMVTHRGEFAVRGGIID 214

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK-----IRNVETIKIYANSHYVTPRPTL 392
           +FP   ED   RV  FG++++++  F     +      I +   +        +     +
Sbjct: 215 VFPP-TEDHPIRVEFFGDEVDQMRWFAVADQRSLSAPGIHHPTELHAPPCREILITASVM 273

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
           + A K +K EL      L                    E +    + + +E+ +  L   
Sbjct: 274 SRAAK-LKAELPAAADML--------------------EKIAGGIAVEGMESLAPVLVDA 312

Query: 453 NPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYGFRLP---- 505
                     + +P +S+  V E          +S           + A  G   P    
Sbjct: 313 MVP-----FVDQLPAESIAVVIEPEKVRTRAHDLSATNEEFLEAAWSTASDGGAAPLDLS 367

Query: 506 ---SCMDN----RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
              S   +    R L     + L       S T              E +     L    
Sbjct: 368 SQASAALHSASFRSLSETRGSALGHGVSWWSIT--------SLAQDAELLPEIDVLNLHA 419

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
            E R  +  V ++   I    +   RI++       A+ L E  +E +I    + S    
Sbjct: 420 REPRGYQGDVAEMMAFIGSHVRDQWRIVVATEGPGPAQRLAELFHENDIPCARVDS---- 475

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                +  + + G  +V      +  G  +    L  + +AD  G
Sbjct: 476 -----LEHEPQAGIIEV--TTAAVGRGFVLDGLKLGLLTEADLLG 513



 Score = 45.5 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 54/150 (36%), Gaps = 13/150 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVEDVYDE-----INLA 578
            + +SATP    LE          IR T  +  P E R    T V    D+     I   
Sbjct: 820 VLAMSATPIPRTLEMSLTG-----IRETSTLATPPEERHPVLTYVGPYTDKQTSAAIRRE 874

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVL 636
             +  ++ L        E     + E     R    H ++      +II D    +FDVL
Sbjct: 875 LMREGQVFLVHNRVSTIERTAAKIRELVPEARVEVAHGKMSESRLEQIIVDFWERRFDVL 934

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLR 666
           V   ++  GLDI     + +  ADK G  +
Sbjct: 935 VCTTIIETGLDISNANTLIVDGADKYGLSQ 964


>gi|294788315|ref|ZP_06753558.1| transcription-repair coupling factor [Simonsiella muelleri ATCC
           29453]
 gi|294483746|gb|EFG31430.1| transcription-repair coupling factor [Simonsiella muelleri ATCC
           29453]
          Length = 1131

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 102/650 (15%), Positives = 204/650 (31%), Gaps = 108/650 (16%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           +GS        + +   +  I++  +   A +L   ++ F P +   +F  + +    E 
Sbjct: 19  SGSLPYLLTQNLPKNTLK--IILTADSETALRLQLAWQFFQPSDNAVFFPDW-ETLPYEH 75

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIV 295
           + P  D   E            R S    L       +   V+  +  I   E       
Sbjct: 76  FSPHQDLVSE------------RLSVLWQLKNNQINTLFLPVATAMQKIAPTEFILGRTF 123

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            LK+G ++    L  +LV   Y      +  G F V G  +++FP    D  +R+ +F  
Sbjct: 124 FLKVGQNLNLDALRENLVNAGYSAVSNVVANGEFAVRGGIVDLFPM-GSDFPYRIDLFDK 182

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F P T + +  V  I++     + T            ++  + +  EL +   
Sbjct: 183 EIDSIKTFDPETQRTLHPVSEIRMLPAHEFPTDEHA--------QKLFRTQFRELIEGDF 234

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                          + ++       +E Y          +    LF+YI E++++   +
Sbjct: 235 ASATV---------YKAVDKAQFGAGVEYYLPLFFESGCVD----LFDYIGENAMVVCTD 281

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
               +   +  +  D   +  +A+     P               L P  + +S      
Sbjct: 282 D---VHAYANRFWDDVKSRHKMAQGDATYPP--------------LAPQYLFLS----PD 320

Query: 536 ELEQCQGIIVEQIIRPTGLVDPP-VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           +         +  I+  G  D P + ++    Q  ++  +         +IL+   +   
Sbjct: 321 QFSGSLKQYPQIWIKTDGRHDLPNIAVKRQAEQPLELLQDFQSTFDG--KILICADSLGR 378

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF---DVLVGINLLREGLDIPEC 651
            E +  +  +  +          TL  ++       G      + + +  L +G  +PE 
Sbjct: 379 RETMFAFFKQHGL----------TLNLLDNWAQFVSGSLKNHQIGICVAPLSQGFRLPEN 428

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAAR---------NVNSKVILYADTITKSIQLAID 702
            L  I + D   ++    +  +     +          N+   V+     I + + L + 
Sbjct: 429 CLAVITENDLYQYVSKPRTRRRKHASISDTTLRDLAEINIGDPVVHQEHGIGRYMGLTVM 488

Query: 703 E-----TTRRREKQLEH-NKKHNINPQS----VKEKIMEVIDPILLEDAATTNISIDAQQ 752
           +     T       LE+ N+     P S    +        D I L    T   S   Q+
Sbjct: 489 DFSGASTEM---MLLEYANESQLYVPVSQLHLISRYAGNASDKITLHKLGTNAWSKAKQK 545

Query: 753 LSLSKKKGKAHLKSLRKQMHLAADN-LNFEEAARIRDEIKRLKSSPYFQG 801
                +   A L +L  Q   AA     FE        I  L    +  G
Sbjct: 546 AIEKARDTAAELLNLYAQ--RAAQTGFKFE--------INELDYQAFADG 585



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 70/182 (38%), Gaps = 13/182 (7%)

Query: 528 VSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
           ++ATP    L                P+  +     ++        + + +    ++G +
Sbjct: 743 LTATPIPRTLSMALDGLRDFSLITTAPSRRLAVKTFVKPFSE--ASIQEAVLRELKRGGQ 800

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           +          E++ + L     + R    H +++  E  +++RD    KF+VL+   ++
Sbjct: 801 VFFLHNEVDTIENMRDKLENLLPQARIGVAHGQLRERELEQVMRDFLNQKFNVLLCSTII 860

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA--DTITKSIQLA 700
             G+DIP    + I  ADK G  +    L Q  GR  R+ +         + +TK  Q  
Sbjct: 861 ETGIDIPNANTIIINRADKFGIAQ----LHQLRGRVGRSHHQAYAYLLTPEYLTKDAQKR 916

Query: 701 ID 702
           +D
Sbjct: 917 LD 918


>gi|254774025|ref|ZP_05215541.1| hypothetical protein MaviaA2_05024 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 1201

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 97/252 (38%), Gaps = 18/252 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             QL+    +      L+G   S +   +A  +  +  P +V+      A  L +E +  
Sbjct: 8   FQQLIDTAAASPADLSLVGPA-SAR-LFVASALARLG-PLLVVTATGREADDLTAELRGV 64

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
               AV  F S+ +    E   P  DT   + +     + R+ H     L      +VV+
Sbjct: 65  VGD-AVAVFPSW-ETLPHERLSPGVDTVGARLTV----LRRLAHPDDARL-GPPLQVVVT 117

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           +V  +    + +      V L +G  +E + +++ LV+  Y R D+   RG F V G  +
Sbjct: 118 AVRSLLQPMTPQLGLVEPVTLSVGQEIEFEHVIARLVELAYSRVDMVGRRGEFAVRGGIL 177

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN--VETIKIYANSHYVTPRPTLNT 394
           ++FP   E    RV  +G+++ E+  F     + I    V+T+        +        
Sbjct: 178 DVFPPTAE-HPVRVEFWGDEVSEMRMFSVADQRSIPEIAVDTVIAVPCRELLLTEDVRAR 236

Query: 395 AMKYIKEELKMR 406
           A      EL  +
Sbjct: 237 A-----AELAAQ 243



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 66/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E     T V   +D      L  + 
Sbjct: 778 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGPHDDKQVAAALRREL 833

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +           +     + E     R +  H ++        ++     ++D+LV
Sbjct: 834 LRDGQAFYVHNRVSSIDRAAARVRELVPEARVVVAHGQMPEERLERTVQGFWNREYDILV 893

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +        
Sbjct: 894 CTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPPHAP- 948

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N +  
Sbjct: 949 ---LTETAYDRLATIAQNNELG 967


>gi|153854537|ref|ZP_01995807.1| hypothetical protein DORLON_01802 [Dorea longicatena DSM 13814]
 gi|149752846|gb|EDM62777.1| hypothetical protein DORLON_01802 [Dorea longicatena DSM 13814]
          Length = 95

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 68/93 (73%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194
              +  F+++  Y P+GDQP AIA+L+KG     + Q LLGVTGSGKTFTMA VI+ +Q+
Sbjct: 3   EFTMNEFKLKAPYEPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLQK 62

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           P +V+A NK LAAQLY EFK  FP NAVEYFVS
Sbjct: 63  PTLVIAHNKTLAAQLYGEFKEMFPDNAVEYFVS 95


>gi|37523406|ref|NP_926783.1| transcription-repair coupling factor [Gloeobacter violaceus PCC
           7421]
 gi|35214410|dbj|BAC91778.1| transcription-repair coupling factor [Gloeobacter violaceus PCC
           7421]
          Length = 1154

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/324 (18%), Positives = 114/324 (35%), Gaps = 34/324 (10%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G     +    + +      P +V+  N   AA+  ++ +     +   Y  S    Y
Sbjct: 31  LQGGNRVARGIAASALARRQGTPLLVVTANLEEAARWSAQLEAMGWGSVYLYPSSEATPY 90

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           +P  + P  +    +   + E   R            +  IV +S +    +   E  ++
Sbjct: 91  EP--FDPEEEVTWGQLQVLAELTGR---------SSAHWAIVCTSRALHPHLPPPEYLAE 139

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             + L+ G  +  ++L   LV+  Y R       G F   GD ++ FP   E +  R   
Sbjct: 140 YCLSLEAGAGLSIEKLTGELVRLGYLRVPQVEAEGQFSRRGDILDFFPVSAE-IPVRAEW 198

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG+++E + EF P T + +  V+ + I          P           EL++RL     
Sbjct: 199 FGDELERLREFDPATQRSLDAVQQVAITPVGFGPVVLP-----------ELQLRL----T 243

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             R+ E     Q +     +       Q+ E   R+L      + P +L +Y+P+   + 
Sbjct: 244 PARVAELPNSWQEV-----VRTQIQQGQAPEGLRRWLGL--AFDQPASLVDYLPDALTVC 296

Query: 473 VDESHVTIPQISGMYRGDFHRKAT 496
           VDE                 + + 
Sbjct: 297 VDEPEQVRSAEHRWCEQAEEQWSH 320



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 72/196 (36%), Gaps = 19/196 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      + E  +  T    PP   R  +T +     E V   I    
Sbjct: 759 VLTLTATPIPRTLYMSLSGVREMSLITT----PPPSRRPIKTHLAPYDPEHVRTAILQEL 814

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G +I          +D+   L       R    H +++  E    +     G+FD+LV
Sbjct: 815 GRGGQIFYVYNRIEDIQDVAARLQAMIPTARVCVGHGQMEEGELESTMLAFSGGEFDILV 874

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + + +A + G L     L   +GR+    ++ +        K  
Sbjct: 875 CTTIIESGLDIPRVNTILVENAHQFG-LSQLYQLRGRVGRSGVQAHAWMFY------KQE 927

Query: 698 QLAIDETTRR-REKQL 712
           +   DE  +R R  Q 
Sbjct: 928 EALTDEARKRLRAIQE 943


>gi|239981759|ref|ZP_04704283.1| transcriptional-repair coupling factor [Streptomyces albus J1074]
 gi|291453617|ref|ZP_06593007.1| transcriptional-repair coupling factor [Streptomyces albus J1074]
 gi|291356566|gb|EFE83468.1| transcriptional-repair coupling factor [Streptomyces albus J1074]
          Length = 1177

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 120/330 (36%), Gaps = 43/330 (13%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+ Q LK       +   L    + + FT+A +     R  + +      A  L +  +
Sbjct: 14  PALTQALKAAGDGHLLTADLVGPPAARPFTVAALARETGRTVLAVTATGREAEDLAAALR 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
              P + V  + S+ +    E   PR+DT   + +     + R+ H            +V
Sbjct: 74  TLLPPDGVVEYPSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPDAGDPETGPVSVV 128

Query: 275 VSSVSC-----IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           V+SV       + G+G +E  +     LK G + + +E++ +L    Y R ++   RG F
Sbjct: 129 VASVRSVLQPQVKGLGDLEPVA-----LKAGRTTDLEEVVRALAAAAYSRVELVEKRGEF 183

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTP 388
            V G  +++FP   ED   R+  +G+++EEI  F     + +   E  +        +  
Sbjct: 184 AVRGGILDVFPP-TEDYPVRIEFWGDEVEEIRYFKVADQRSLEIAEHGLWAPPCRELLLT 242

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
                 A       L +   EL +                 L  +    + + +E+ +  
Sbjct: 243 DQVRERA-----AALAVDHPELGE----------------LLGKIAEGVAVEGMESLAPV 281

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHV 478
           L           L + +PE ++  V +   
Sbjct: 282 LVDEMEL-----LLDVLPEGAMALVCDPER 306



 Score = 38.5 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 65/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + +  PP E     T V     + +   I    
Sbjct: 778 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYDPKQIGAAIRREL 833

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 834 LREGQVFYIHNRVESIDKAAARLREIVPEARIATAHGKMSEQALEQVVVDFWEKKFDVLV 893

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R        +     K  
Sbjct: 894 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRERGYAYFLYPPEKP- 948

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 949 ---LTETAHERLATIAQHTEMG 967


>gi|262404233|ref|ZP_06080788.1| transcription-repair coupling factor [Vibrio sp. RC586]
 gi|262349265|gb|EEY98403.1| transcription-repair coupling factor [Vibrio sp. RC586]
          Length = 1155

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 114/311 (36%), Gaps = 37/311 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +A++  A     ++  P+   A +L  E    F H+ V  F  + +    +
Sbjct: 24  LHGSSLALAIAELANAHTSHTLLAVPDPQTALKLLHEV-EQFSHSEVALFPDW-ETLPYD 81

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D        I+++I R+     +         +V   + +      +   Q  +
Sbjct: 82  NFSPHQDI-------ISDRISRL----YQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTL 130

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  F +
Sbjct: 131 IVKRGDLFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDFFDD 189

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F P   + I  ++ I++     +    PT   A++  +   + R         
Sbjct: 190 EIDTIRTFDPENQRSIAEMDEIRLLPAHEF----PTTAAAIEEFRNRWRQR--------- 236

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD- 474
             EA+R  + I      +        IE +       +      TLF+Y+P +S L V  
Sbjct: 237 -FEARREPESI---YSQVSKGTWPAGIEYWQPLFFDHSE-----TLFDYLPSNSQLLVVG 287

Query: 475 ESHVTIPQISG 485
           E   +I Q   
Sbjct: 288 ELEKSIDQFLA 298



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 72/181 (39%), Gaps = 13/181 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q ED  + + +     +G
Sbjct: 756 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSEDSVIREAVLREIMRG 814

Query: 583 LRILLT---VLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++      V T    A DL + + E  + V   H +++  E  +++ D    +F++LV 
Sbjct: 815 GQVYFLHNQVETIDKVAADLEKLVPEARVTVA--HGQMRERELEKVMNDFYHQRFNLLVC 872

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I 
Sbjct: 873 TTIIETGIDVPTANTIIMDRADSLGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAIT 928

Query: 699 L 699
            
Sbjct: 929 K 929


>gi|221632687|ref|YP_002521908.1| transcription-repair coupling factor [Thermomicrobium roseum DSM
           5159]
 gi|221157121|gb|ACM06248.1| transcription-repair coupling factor [Thermomicrobium roseum DSM
           5159]
          Length = 1165

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/335 (17%), Positives = 113/335 (33%), Gaps = 44/335 (13%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           + +   +A +   + RP +V+ P +  A +L            VE +             
Sbjct: 45  AARPAVLAALARILDRPLLVIVPRQAHADELADAVGQLLGEIPVEVWQ------------ 92

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV-ESYSQMIVQL 297
              +T      + +      R    + + E +  + ++    +  +    ES     + L
Sbjct: 93  -APETLPYDVFAQDRASAVERSWFLQRMTEPSPGLFIAPARGLLQLLPPNESLRGCPLTL 151

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           ++G  +  + +L  LV   Y    +    G+F   G  ++++P    D+A R+  FG++I
Sbjct: 152 RVGQKMALQTVLDYLVDSGYAPVPLVQQPGSFSRRGGIVDVWPP-GNDLAVRIEFFGDEI 210

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           + I  F P T + +  + +I +   S    P                 +L     + R L
Sbjct: 211 DSIRRFEPTTQRSVDRLHSIMLLPLSEAPLP-----------------QLQAAATKLRRL 253

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIEN--YSRYLTGRNPGEPP--PTLFEYIPEDSLLFV 473
           +   L   +  + E L     CQ IE            P   P   +L +  P    + V
Sbjct: 254 DTSSLRPEVREEWERL-----CQQIERGELVPLPELALPFVFPEASSLLDRFPRSFPVVV 308

Query: 474 DES---HVTIPQISGMYRGDFHRKATLAEYGFRLP 505
            +     +TI Q++              E    LP
Sbjct: 309 VDPGAVRLTIDQLTQQAEELRETSELSGELPRGLP 343



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 73/206 (35%), Gaps = 17/206 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVE--IRSARTQVED 570
           E +  LR     + ++ATP    L     G+    +I    +   PV   +  AR  V  
Sbjct: 753 EHFKRLRTNVDVLTMTATPIPRTLYLALSGVRDLSVIATPPVDRTPVRTFVTPARDSV-- 810

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDL 628
           + + I     +G ++ +         D  + L       R+   H ++   E   II D 
Sbjct: 811 IREAILREIARGGQVYVVHNRVHSILDFAQRLRGLVPEARFAVAHGQMPEQELERIIVDF 870

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              K+DVL+   ++  G+DIP    + I  A + G     T L Q  GR  R+       
Sbjct: 871 IERKYDVLICTAIIESGVDIPSVNTIIIDQAQQLGL----TQLYQLRGRVGRSHQRAYAY 926

Query: 689 YADTITKSIQLAIDETTRRRE-KQLE 713
                 + +     E   R E  Q  
Sbjct: 927 LLYDDRRPLSA---EARARLEAIQEA 949


>gi|153837338|ref|ZP_01990005.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           AQ3810]
 gi|149749369|gb|EDM60142.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           AQ3810]
          Length = 1153

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 97/536 (18%), Positives = 192/536 (35%), Gaps = 71/536 (13%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +       +K Q L  + G+     +A++ +     ++++ P+  +A +L +E + F
Sbjct: 6   ILSVTNPTERGDKKQ-LGNLPGAALPLAIAELAKQHSSHSLLVVPDPQIALKLQAEIEQF 64

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                           QP +  P  +T      S +++I   R +    L  +   + + 
Sbjct: 65  TD--------------QPVSLFPDWETLPYDNFSPHQEIISDRIARLYQLPNQRGGVTIV 110

Query: 277 SVSCIYGIGSVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            VS +    S   +  Q  + +K GD+   + L   L    Y+  D     G +   G  
Sbjct: 111 PVSTVLQRQSPRDFLLQHTLMVKTGDNFSLENLRVQLENSGYRHVDQVFGPGEYASRGSI 170

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +++FP    D  +R+  F ++I+ I  F P   + I +++ I++     + T +     A
Sbjct: 171 LDLFPMGSAD-PYRIDFFDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEFPTTKE----A 225

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++  +   + +           EA+R  + I      +        IE +          
Sbjct: 226 IEDFRTRWRTQ----------FEARREPESIYM---QVTKGTWPAGIEYWQPLFF----- 267

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL-- 513
           +   TLF+Y+PEDS L       T   I        +      EY +        RPL  
Sbjct: 268 DHTETLFDYLPEDSQLI------TYGDIEAAVDTFLND----VEYRYDQKKIDPLRPLLA 317

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
             + W             P +   +     +V++  R    V    E+   + Q ++   
Sbjct: 318 PHDLWLKKDELFAHFKRLPQA---QLSLEKVVKRAGRQNLAVQTLAEL-GVQQQNKEPLS 373

Query: 574 EINLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            +   ++Q   +I+ +V ++   E LTE L  + I+VR        + +  +   L    
Sbjct: 374 RLRQFSEQFTGKIIFSVESEGRREALTELL--QGIKVR-------PVVQESLYHALESDH 424

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              L+       G    E     I ++D  G       +IQ   +  + VNS  ++
Sbjct: 425 RFTLIL-GSAEHGFIHDELNFALICESDLLG-----DRVIQRRRKDKKAVNSDTVI 474



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 16/187 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + +     +
Sbjct: 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVREREESV--VREAVLREIMR 811

Query: 582 GLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T  + AEDL + + E  I V   H +++  E   I+ D    +F+VLV
Sbjct: 812 GGQVYFLHNQVETIEKTAEDLQKLIPEARITVA--HGQMRERELERIMNDFYHQRFNVLV 869

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 870 CTTIIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAM 925

Query: 698 QL-AIDE 703
              AI  
Sbjct: 926 TKDAIKR 932


>gi|45657330|ref|YP_001416.1| transcription-repair coupling factor [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45600568|gb|AAS70053.1| transcription-repair coupling factor [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 1186

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 79/505 (15%), Positives = 176/505 (34%), Gaps = 74/505 (14%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           +  VT    +   + + + + +  +V++ N   A  L+ E  +F P N +          
Sbjct: 69  VYSVTTGSHSILASSLFQKLNQTILVVSENNTSAEFLFREALSFLPSNDLI--------- 119

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC-IYGIGSVESYS 291
               Y+P  +    +      ++ R R  A   +L     ++ +SVS  +  +  +++  
Sbjct: 120 ----YLPGQEVLPYEYMRYPSEMKRERIKAIAKILSGEPVLIFTSVSGFLKTLPPIQTMQ 175

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + LK G  ++ + LL  L+   YKR  +    G F + G  ++IF S+  +   R+ 
Sbjct: 176 GRAIVLKKGKEIDLESLLIQLIDLGYKRVQVCETFGEFSLKGGILDIFSSYSTE-PVRID 234

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +FG +IE I  F P + + + +++   +     Y+             K+E +  L   +
Sbjct: 235 LFGEEIESIRTFDPDSQRSMTDLDQAVLLPADEYILSEEQ--------KKEYQNFLKSSD 286

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
               L E                        E     +   +       +  Y  +  +L
Sbjct: 287 SSLHLPEIP--------------EGNYGIYYEELIPLVRENHG------ILSYFSKPPIL 326

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
               ++    ++          K  L+ +  R    +   P +   +             
Sbjct: 327 IFPSANSVKERL------FHLEKEYLSLFEKRSREVLCAPPEKLLSF------------- 367

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEINL-AAQQGLRIL 586
            G       + I +  +  P    +  V    E  S + ++ +V ++I+   A+ G +I+
Sbjct: 368 -GEEFKVLSESIGLSFVGLPPRNENDLVSLLKEAPSFKGKIREVREKISELRAKGGWKIV 426

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           LT   +   + L     +  +    + +E  T      + + +   F VL   + LR G 
Sbjct: 427 LTSSFEAQTKRLQGLFEKEGVI---LLNEDSTEPLPFHLGNHKSDTFLVL---SELRNGF 480

Query: 647 DIPECGLVAILDADKEGFLRSKTSL 671
            +    ++ + + D  G    + + 
Sbjct: 481 ILENQKILILSENDIFGREYKRKTR 505



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 77/210 (36%), Gaps = 11/210 (5%)

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQV 568
           N     +++  L    + ++ATP    L      I E  II         VE        
Sbjct: 779 NHKETIKKFKNLVD-VLTLTATPIPRTLHMALTGIRELSIIATPPKNRQSVETYVLEEDD 837

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIR 626
           + + D I    Q+G ++          E+ T YL +    + +  +H ++   E  E + 
Sbjct: 838 DLISDAIRNEIQRGGQVFYLYNRVETIEEETNYLSKLVPEVSIGILHGQMTEDEIEETLL 897

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D    K+D+LV   ++  G+D+P    + +  AD  G  +    L Q  GR  R+     
Sbjct: 898 DFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFGLSQ----LYQIRGRVGRSDRKAF 953

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNK 716
                      ++  ++  +R     E+ +
Sbjct: 954 AYMLLPKD---RVVTEQAEKRLNTIFEYQE 980


>gi|24215213|ref|NP_712694.1| transcription-repair coupling factor [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24196293|gb|AAN49712.1|AE011418_8 transcription-repair coupling factor [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 1186

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 80/505 (15%), Positives = 176/505 (34%), Gaps = 74/505 (14%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           +  VT    +   + + + + +  +V++ N   A  L+ E  +F P N +          
Sbjct: 69  VYSVTTGSHSILASSLFQKLNQTILVVSENNTSAEFLFREALSFLPSNDLI--------- 119

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC-IYGIGSVESYS 291
               Y+P  +    +      ++ R R  A   +L     ++ +SVS  +  +  +++  
Sbjct: 120 ----YLPGQEVLPYEYMRYPSEMKRERIKAIAKILSGEPVLIFTSVSGFLKTLPPIQTMQ 175

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + LK G  ++ + LL  L+   YKR  +    G F + G  ++IF S+  +   R+ 
Sbjct: 176 GRAIVLKKGKEIDLESLLIQLIDLGYKRVQVCETFGEFSLKGGILDIFSSYSTE-PVRID 234

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +FG +IE I  F P + + + +++   +     Y+             K+E +  L   +
Sbjct: 235 LFGEEIESIRTFDPDSQRSMTDLDQAVLLPADEYILSEEQ--------KKEYQNFLKSSD 286

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
               L E                        E     +   +       +  Y  E  +L
Sbjct: 287 SSLHLPEIP--------------EGNYGIYYEELIPLVRENHG------ILSYFSEPPIL 326

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
               ++    ++          K  L+ +  R    +   P +   +             
Sbjct: 327 IFPSANSVKERL------FHLEKEYLSLFEKRSREVLCAPPEKLLSF------------- 367

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEINL-AAQQGLRIL 586
            G       + I +  +  P    +  V    E  S + ++ +V ++I+   A+ G +I+
Sbjct: 368 -GEEFKVLSESIGLSFVGLPPRNENDLVSLLKEAPSFKGKIREVREKISELRAKGGWKIV 426

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           LT   +   + L     +  +    + +E  T      + + +   F VL   + LR G 
Sbjct: 427 LTSSFEAQTKRLQGLFEKEGVI---LLNEDSTEPLPFHLGNHKSDTFLVL---SELRNGF 480

Query: 647 DIPECGLVAILDADKEGFLRSKTSL 671
            +    ++ + + D  G    + + 
Sbjct: 481 ILENQKILILSENDIFGREYKRKTR 505



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 77/210 (36%), Gaps = 11/210 (5%)

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQV 568
           N     +++  L    + ++ATP    L      I E  II         VE        
Sbjct: 779 NHKETIKKFKNLVD-VLTLTATPIPRTLHMALTGIRELSIIATPPKNRQSVETYVLEEDD 837

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIR 626
           + + D I    Q+G ++          E+ T YL +    + +  +H ++   E  E + 
Sbjct: 838 DLISDAIRNEIQRGGQVFYLYNRVETIEEETNYLSKLVPEVSIGILHGQMTEDEIEETLL 897

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D    K+D+LV   ++  G+D+P    + +  AD  G  +    L Q  GR  R+     
Sbjct: 898 DFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFGLSQ----LYQIRGRVGRSDRKAF 953

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNK 716
                      ++  ++  +R     E+ +
Sbjct: 954 AYMLLPKD---RVVTEQAEKRLNTIFEYQE 980


>gi|262376147|ref|ZP_06069377.1| transcription-repair coupling factor [Acinetobacter lwoffii SH145]
 gi|262308748|gb|EEY89881.1| transcription-repair coupling factor [Acinetobacter lwoffii SH145]
          Length = 1152

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 115/343 (33%), Gaps = 38/343 (11%)

Query: 155 AAIAQL-LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
             I+QL L  + + EK   L  + GS     + ++++   R  IV+A N     QL SE 
Sbjct: 4   QEISQLNLPQLKAGEKR-WLGNLQGSSTALLLKEIVQQQSRLFIVIARNNQHLGQLESEL 62

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           + +     +      ++    +   P  D   E+ + ++              + +   +
Sbjct: 63  EFYGIKPTI---FPDWEILPYDRLSPHQDIVSERLAILSN-------------MPKTGVL 106

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           ++S+ +    +            + +G   + ++    L++  Y   D     G F V G
Sbjct: 107 LLSASTLAQRVAPTSWILGEHFDIHVGQKFDLEQQKKKLIQAGYHLVDTVYDPGEFAVRG 166

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++I+ +  ++   R+ +F ++IE +  F   T +  ++++   +     +        
Sbjct: 167 SIMDIY-ASGQEAPIRIDLFDDEIESLKFFDSETQRTTQSLQQFTVLPAQEFPLKEGRAT 225

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                     + R  E        +            + +        IE Y        
Sbjct: 226 ---------FRDRYAEFFPTANPKK--------NPIYQDVMDGIVSPGIEFYLPLFFSAE 268

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
             +   +L  Y+P++ ++  D        +S  ++    R   
Sbjct: 269 AMQGQSSLISYLPKNGIVITD--KALEESLSQFWQDVVRRYED 309



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 67/177 (37%), Gaps = 7/177 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      + +  I  T            +   +D   + I     +G 
Sbjct: 756 MLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEHTDDTIKEAILRELLRGG 815

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +   E++ +     R +  H +++  E  ++++     +++VLV   +
Sbjct: 816 QVYFLHNEVDTIDRAAEHIRKLVPEARVIVAHGQMRERELEQVMQQFYHKEYNVLVCSTI 875

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           +  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K+++
Sbjct: 876 IETGIDVPNANTILIERADKLGLAQ----LHQLRGRVGRSHHQAYAYLMVPSLKALK 928


>gi|314922168|gb|EFS85999.1| transcription-repair coupling factor [Propionibacterium acnes
           HL001PA1]
 gi|314965251|gb|EFT09350.1| transcription-repair coupling factor [Propionibacterium acnes
           HL082PA2]
 gi|315094011|gb|EFT65987.1| transcription-repair coupling factor [Propionibacterium acnes
           HL060PA1]
 gi|327329541|gb|EGE71301.1| transcription-repair coupling factor [Propionibacterium acnes
           HL103PA1]
          Length = 1208

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 82/468 (17%), Positives = 151/468 (32%), Gaps = 66/468 (14%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++      A +  +  K +   ++V Y+ S+ +    E   PRTDT   +   +   
Sbjct: 70  PVLLVTSTFREAEESAATLKTWLGADSVCYYPSW-ETLPHERLSPRTDTVGRRMEVLR-- 126

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
               R   T         +VV+ V  +             V+L +G+  +  EL + LV 
Sbjct: 127 ----RLCGTEG---EVPQVVVAPVRSLLQPQVAGLGRIAPVRLAVGEQHDLTELATELVN 179

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R D+   RG F V G  +++FP  LE    R+  FG++IEE++ F     +     
Sbjct: 180 AAYSRVDMVERRGEFAVRGGIVDVFPPVLE-HPVRIDFFGDEIEEMTSFAVADQRSTDET 238

Query: 375 ETIKIY-ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
               I       +      + A        K  L +  +   +LE              +
Sbjct: 239 HQELICAPCRELILTDEVRSRA--------KALLTDHPELADMLER-------------I 277

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
               + + +E     L           L + +PE +++ + +  +   + + + R     
Sbjct: 278 GNGQAVEGMEALMPALVDEMEL-----LVDVLPEHAMVVLSDPEMVRSRAADLVRTSEEF 332

Query: 494 KA--------------TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
                            LA  G+R  S    R    E        +     +P +  L  
Sbjct: 333 LGAGWAAAAGGGQAPIDLAASGYR--SLAQVRSHCLERGMAWWSMSSFSLDSPATDVLVD 390

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
                  Q + P       V +      VE    ++      G  +LL    + MA+ ++
Sbjct: 391 DDITSAPQTVNPQ-----LVAVEPWHGDVEAAVKDLTTRLDDGWTVLLCAEGEGMAKRMS 445

Query: 600 EYLYERNIRVRYMHS-------EVKTLERIEIIRDLRLGKFDVLVGIN 640
           E L E N+  R +             + R+            +LV   
Sbjct: 446 ELLGEHNVAARLVDDVDPDATEPCVQVIRLHQRHGFAADSVKLLVAST 493



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 25/205 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--------RTQVEDVYDEIN 576
            + +SATP    LE     I E     T    PP E              QV      I 
Sbjct: 801 VLAMSATPIPRTLEMAVTGIREMSTIAT----PPEERHPVLTFAGPYDEGQV---VAAIR 853

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
               +  ++       +  E     L E     R +  H ++   +  +I+ D    + D
Sbjct: 854 RELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQLEQIMVDFWERRAD 913

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV   ++  G+DI     + I  AD  G  +    L Q  GR  R+       +     
Sbjct: 914 VLVCTTIVESGIDISTANTLLIDRADLMGLSQ----LHQLRGRVGRSRERGYAYFLYPAD 969

Query: 695 KSIQLAIDETTRRREKQLEHNKKHN 719
           K     + +T   R   +  +    
Sbjct: 970 KP----LSQTAHDRLATMAAHTDLG 990


>gi|149922002|ref|ZP_01910444.1| Transcription-repair coupling factor [Plesiocystis pacifica SIR-1]
 gi|149817167|gb|EDM76647.1| Transcription-repair coupling factor [Plesiocystis pacifica SIR-1]
          Length = 1243

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/376 (16%), Positives = 136/376 (36%), Gaps = 33/376 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE--AMQRPAIVMAPNKILAAQLYSE 212
            A+  +L  + S  + ++L G  G  +   +A+ +       P + +AP+   A  + ++
Sbjct: 7   EALPVVLTALRSGRRKRVL-GAEGGYRGLLLARAMADPETDAPLVYVAPDDTTAQTVAAD 65

Query: 213 FKNF--FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270
              F      A           Q    VP  D     + S + +    R +A   L    
Sbjct: 66  VAFFAGSGEGASATDAGPVGSNQRVLTVPEIDVSPYGDVSPDPRSVGARMAALERLRAGE 125

Query: 271 DCIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
             +++ S+ S +      E+++Q+         + ++E  + L    Y+R D+    G F
Sbjct: 126 PELIILSLRSLMRKTIPAEAFAQLCRTWAREGELGREEAAAFLSAAGYRRVDVVGDPGCF 185

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
            + G  ++++   LE    R+  +G++IE I  F P + + +R V +I+++     V   
Sbjct: 186 AIRGGIMDVWVP-LERFPARLEWWGDEIERIRVFDPDSQRSLREVRSIRVHPVRETVATG 244

Query: 390 PTLN-TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
                 A++    EL  R+                      +  L        I+  +  
Sbjct: 245 SRTTANALRLAVLELGDRIEVPSSA------------TRQVIANLGAGVDFFGIDALTPV 292

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
                  +   ++ +Y+P ++  ++DE    +        G   R A   ++ +R     
Sbjct: 293 FH-----DGLASVADYLPANARWYLDEPEALV--------GLGERMADELDFEYRRAVEA 339

Query: 509 DNRPLRFEEWNCLRPT 524
            +     E++ C R  
Sbjct: 340 KHLVAAPEDFFCTREQ 355



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 15/210 (7%)

Query: 516  EEWNCLRPTT--IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY- 572
            + +  L+ +   + ++ATP    L      + E  +  T  VD    +R+  T+  DV  
Sbjct: 812  DRFKKLKTSVDMLTLTATPIPRTLHMSLLGMREISMITTAPVDRLA-VRTYLTRHSDVVL 870

Query: 573  -DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLR 629
             + I     +G +I   V      E+    + E     R +  H ++      + + D  
Sbjct: 871  EEGIRRELARGGQIFYVVPRVMGIEEHAVRIRELVPEARVIVAHGQMPPEMLEQTMVDFV 930

Query: 630  LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
              + DVLV   ++  GLDIP    + I  AD+ G  +    L Q  GR  R   SK+  Y
Sbjct: 931  RHEADVLVSTTIIESGLDIPRANTMFIARADQFGLAQ----LYQLRGRIGR---SKLRAY 983

Query: 690  ADTITKSIQLAIDETTRRREKQLEHNKKHN 719
               +  S++  + E  RRR + ++ + +  
Sbjct: 984  CYLMVASLER-LSEDARRRLEAIQRHSELG 1012


>gi|169628250|ref|YP_001701899.1| transcription-repair coupling factor [Mycobacterium abscessus ATCC
           19977]
 gi|169240217|emb|CAM61245.1| Probable transcription-repair coupling factor (TrcF) [Mycobacterium
           abscessus]
          Length = 1216

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/340 (18%), Positives = 122/340 (35%), Gaps = 25/340 (7%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A   L   I ++    L L      + F +  + +A   P +V+      A  L +E +
Sbjct: 19  PAFDVLAPAIAAKTG--LDLTAPTCARAFVVTGMADASDAPVLVVTATTREAQDLTAELR 76

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           + +   AV    S+ +    E   P  DT   +   ++    R+ H    S +     +V
Sbjct: 77  DVYGD-AVTLLPSW-ETLPHERLSPGVDTVGARLQVLH----RLAHPE-DSRMGVPLRVV 129

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +++V  +    S E +    V+L +G  +E   +++ LV+  Y R D+   RG F V G 
Sbjct: 130 ITTVRSLLQPMSPELFDLEPVELAVGAELEFDGVIARLVELAYTRVDMVAGRGEFAVRGG 189

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN--VETIKIYANSHYVTPRPTL 392
            +++F S   D   RV  +G+++ E+  F     + I    V+++        +      
Sbjct: 190 ILDVF-SPTADHPVRVEFWGDEVSEMRYFSVADQRSIPELQVDSVLAMPCRELLLTDQVR 248

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
             A +                    E  RL   +   L  L        +E+    L   
Sbjct: 249 ARAAEL---------ASAAGVSGSEEGHRLGAGVGEMLAKLADGICVDGMESLLPVLHSG 299

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
                   L +++P+ + + V +      + + + R    
Sbjct: 300 KLTM----LVDHLPDHAPVLVCDPEKVRTRAADLERTGRE 335



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 66/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E     T V   +D      L  + 
Sbjct: 799 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGPHDDKQVAAALRREL 854

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +           +     + +     R +  H ++        ++     ++D+LV
Sbjct: 855 LRDGQAFYVHNRVSTIDKAAARIRDLVPEARVVVAHGQMPEEMLERTVQGFWNREYDILV 914

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +  +     
Sbjct: 915 CTTIIETGLDISNANTLIVERADIFGLSQ----LHQLRGRVGRSRERGYAYFLYSPEVP- 969

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N    
Sbjct: 970 ---LTETAYDRLSTIAQNNDLG 988


>gi|111022724|ref|YP_705696.1| transcription repair coupling factor [Rhodococcus jostii RHA1]
 gi|110822254|gb|ABG97538.1| transcription repair coupling factor [Rhodococcus jostii RHA1]
          Length = 1215

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 95/261 (36%), Gaps = 26/261 (9%)

Query: 148 HPSGDQPAA-----------IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
            PS D P A           IAQ+ + +    +  L +   G  + F  A + E      
Sbjct: 9   EPSSDTPLAGLAKIALGDAVIAQVTEAL---GRHHLDIVAPGPARPFVAAALAERTH--L 63

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++      A  L +E +      AV  F S+ +    E   P  DT   +     E + 
Sbjct: 64  LLVTATGREADDLTAELREMIGD-AVAQFPSW-ETLPHERLSPSADTVGRRV----EVLR 117

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           R+     RS       IV +  S +  +          V L++G   +   L+  LV+  
Sbjct: 118 RLARPDDRSYGAPLQVIVTTVRSLVQPMA-PGLGEIEPVTLRVGVEHDFDGLIQRLVEMA 176

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV-- 374
           Y R D+   RG F V G  +++F S   D   RV  +G+++ E+  F     + +  +  
Sbjct: 177 YTRVDMVGKRGEFAVRGGILDLF-SPTADHPVRVEFWGDEVTELRAFSVADQRSLPELDI 235

Query: 375 ETIKIYANSHYVTPRPTLNTA 395
           + +        +      + A
Sbjct: 236 DAVIAPPCRELLLTEDVRDRA 256



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 66/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + ++ PP E     T V     + V   I    
Sbjct: 803 VLTMSATPIPRTLEMSMAGIREM----STILTPPEERHPILTYVGAYADKQVAAAIRREL 858

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +   + + E     R +  H ++        ++      +DVLV
Sbjct: 859 LRDGQVFYVHNRVSSIDKSAQRIRELVPEARVVVAHGQMNEDTLERTVQGFWERDYDVLV 918

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +     K  
Sbjct: 919 CTTIIETGLDISNANTLIVERADSLGLSQ----LHQLRGRVGRSRERGYAYFLYPPEKP- 973

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N    
Sbjct: 974 ---LTETAYDRLATISQNSDLG 992



 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 15/155 (9%)

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           +        V+S      E       +   +I   G     + +R+A   V+D       
Sbjct: 651 FTETHDQLTVISEVKADME---KAVPMDRVVIGDVGYGKTEIAVRAAFKAVQD------- 700

Query: 578 AAQQGLRILL--TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              + + +L+  T+L ++  +  TE +    + VR +       +  E I  +  G+ DV
Sbjct: 701 --GKQVAVLVPTTLLAQQHLQTFTERMAAFPVTVRGLSRFTDAGDSKETIAGMADGEIDV 758

Query: 636 LVGIN-LLREGLDIPECGLVAILDADKEGFLRSKT 669
           +VG + LL+ G+   + GLV + +  + G    + 
Sbjct: 759 VVGTHRLLQTGIRWKDLGLVIVDEEQRFGVEHKEH 793


>gi|293603936|ref|ZP_06686351.1| transcription-repair coupling factor [Achromobacter piechaudii ATCC
           43553]
 gi|292817773|gb|EFF76839.1| transcription-repair coupling factor [Achromobacter piechaudii ATCC
           43553]
          Length = 1160

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 82/534 (15%), Positives = 166/534 (31%), Gaps = 74/534 (13%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A A  L  + +  +        GSG  + +A +      P +++    + A +L  E +
Sbjct: 21  PATASTLSALKAGARYAQPR-PPGSGDAWLLADLARQASAPLVILTAEPVEAQRLAEEIQ 79

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            F P   V     + +    +A+ P  D   E+            H+    +++  D + 
Sbjct: 80  LFAPDLRVRQLPDW-ETLPYDAFSPHQDLISERL-----------HTLHSLMMKTVDVLT 127

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           V   + +Y +      +      K  D + +  L + L    Y         G F + G 
Sbjct: 128 VPITTALYRLAPPSFLAAYTFSFKQKDKLNEAALRAQLTLANYNHVTQVTAPGEFCLRGG 187

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I++FP     V +R+ +F ++IE I  F   T + +  V  +++     +     + N 
Sbjct: 188 LIDLFPM-GSVVPYRLDLFDDEIETIRSFDVDTQRSLYPVGEVQLLPGREFPMDEDSRNR 246

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
                            +      ++ L        + +        +E Y         
Sbjct: 247 F-----------RARFREIFEGDPSRALP------YKDIGNGIPFAGVEYYLPLFF---- 285

Query: 455 GEPPPTLFEYIPEDSL-LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
            E   TLF+Y+   ++ + + +    I + +      +    +  E     PS +    L
Sbjct: 286 -EETATLFDYLTAGTVTVTIGDIDDAIQRFNQDTSSRYSFLKSDRERPVLPPSAL---FL 341

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
             E           +S T G                 P     P  ++ S   + +D   
Sbjct: 342 DSETLYTRLKEFRRLSLTAGE----------------PHPDFQPVPDV-SVARRSDDPIA 384

Query: 574 EINLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++    Q +  R+LL   +    E L + L E  +             + + I       
Sbjct: 385 KLRALVQTRQTRVLLCADSAGRRETLVQMLNEFGVT---------PDAQPDTIEAFLASD 435

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
            +  +    L  G  +P+  L  + + D    L        T GR  +    + 
Sbjct: 436 ANFGIVAAPLATGFGLPQANLAFLTENDLYPGLA-------TTGRRGKRDQERA 482



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 80/202 (39%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +GI    +I   P   +     +R        + + +    ++
Sbjct: 769 VLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTFVRREDG--STLREALLRELKR 826

Query: 582 GLRILLT---VLT-KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +       V T       L E + E  I V   H ++   E  ++++     +++VL+
Sbjct: 827 GGQCYFLHNEVETIHNRRARLEELVPEARIAVA--HGQMPERELEQVMKGFYQQRYNVLL 884

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  AD+ G  +    L Q  GR  R+ + +   Y  T  +  
Sbjct: 885 CTTIIETGIDVPSANTIVIHRADRFGLAQ----LHQLRGRVGRS-HHQAYAYLLTPGED- 938

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
             AI    ++R + ++  ++  
Sbjct: 939 --AITNNAKKRLEAIQAMEELG 958


>gi|207724177|ref|YP_002254575.1| transcription-repair coupling factor protein [Ralstonia
           solanacearum MolK2]
 gi|206589387|emb|CAQ36349.1| transcription-repair coupling factor protein [Ralstonia
           solanacearum MolK2]
          Length = 1147

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 85/528 (16%), Positives = 172/528 (32%), Gaps = 79/528 (14%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAP-NKILAAQLYSEFKNFFPHN 220
           +   ++  +  G+ GS     +A+ +E  +   P + +   N + A +L  E + F P  
Sbjct: 16  VKPGQRF-VFSGLQGSADALLLARYLEQHRATAPMLAVVCANAVDAQRLADELRWFAPQA 74

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVS 279
            V+              +P  +T      S ++ +   R +    L       ++V + +
Sbjct: 75  RVKL-------------LPDWETLPYDNFSPHQDLISERLATLHDLQGGACDLLLVPAPT 121

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
            +  I      +      K G+ +++  L +      Y+     +  G + V G  I++F
Sbjct: 122 ALQRIAPPSFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLF 181

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P     + +R+ +FG++IE I  F P T + +  V  +++     +              
Sbjct: 182 PM-GSPMPYRLDLFGDEIETIRAFDPDTQRSLYPVNEVRLLPGREFPMDE---------- 230

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
                  +      GR  E    +       + +        IE Y          E   
Sbjct: 231 -------VARTAFRGRWREVFEGDPTRAPIYKDIGNGVPSAGIEYYLPLFF-----EETA 278

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519
           TLF+Y+P  + L +      I      +  D  ++     +         +RPL      
Sbjct: 279 TLFDYLPATAHLALVGD---IEAAVRRFWADTTQRYNFMRHDR-------DRPLLAPPAL 328

Query: 520 CLRPTTIVVSATP-GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
            L      V+A P     L    G     +  P   V+   E        + + +     
Sbjct: 329 YLDEEAFFVAAKPHARLVLRAEAGDAPLSLPLPNVAVNRRAE--------DPLVNLEAFL 380

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +   R+++   +    E L + L         +H E      +    DL  G+   ++G
Sbjct: 381 MRGNCRVMICAESAGRRETLAQMLAASG-----LHPEG-----VADCADLMGGEARFVLG 430

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +  L +G          IL  ++  F+       Q + R+ R    + 
Sbjct: 431 VAPLYQGF---------ILGDERIAFITETELYAQAVRRSGRRKQEQA 469



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 20/198 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + I    ++
Sbjct: 756 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDSV--LREAILRELKR 813

Query: 582 GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E+    L E + E  + V   H ++   E   ++RD    + ++L+
Sbjct: 814 GGQVYFLHNEVETIENKRAKLEELVPEARVAVA--HGQMHERELERVMRDFVAQRANILL 871

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +    
Sbjct: 872 CTTIIETGIDVPTANTILIHRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLVHDA 924

Query: 698 QLAIDETTRRRE--KQLE 713
           +    +  RR E  +Q+E
Sbjct: 925 EGLTKQAQRRLEAIQQME 942


>gi|119512690|ref|ZP_01631763.1| transcriptional-repair coupling factor [Nodularia spumigena
           CCY9414]
 gi|119462657|gb|EAW43621.1| transcriptional-repair coupling factor [Nodularia spumigena
           CCY9414]
          Length = 1164

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 77/503 (15%), Positives = 169/503 (33%), Gaps = 63/503 (12%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +R++   L G++   K    + + +      +V+ P    A + +++ +    H    Y 
Sbjct: 24  NRQQELRLNGISRLPKGLVASALAQNSGNNLLVVVPTLEEAGRAFAQLEAMGWHTVHFYP 83

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
            S    Y+P  + P T+    +   + + ++    S+     +R+  IV ++ +    + 
Sbjct: 84  TSEASPYEP--FDPETEMTWGQMQVLADLMNENGESSQNPTTKRSLAIVATAGALQPHLP 141

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
             +++    + +K G   +       +    Y+R  +    G +   GD ++++P   E 
Sbjct: 142 PPDAFIPFCLTVKRGMEFDLDTFGEKITTLGYERVPLVETEGQWSRRGDIVDVYPVSSE- 200

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQK-IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           +  R+  FG++IE+I EF   T +  +  V+ + +   S        L     +   EL 
Sbjct: 201 MPVRLEWFGDEIEKIREFDAATQRSALDKVDQVTLTPTSFAPIVSEALKDNADFTDSEL- 259

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                                                +E   R+L        P +L +Y
Sbjct: 260 -------------------------------------LEGSRRFLGLAFA--KPASLLDY 280

Query: 465 IPEDSLLFVDESHVTIPQISGM-YRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP 523
           + E++L+ VDE               +        E+G        +  L   + +    
Sbjct: 281 LGENTLIAVDEPEQCHAHSDRWVENAEEQWGVGSREWGVGSGEESSSISLELPKIHRSFD 340

Query: 524 TTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             +V V+  P  +  E  +          +G+      +     Q   +   +     + 
Sbjct: 341 ECLVDVTKFPTIYLSELAEE--------NSGINLASRSLPVTPHQFNKLAQTLRQERDRN 392

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             I L       +  L   L E +   +++ +        + I  L++    V +  + L
Sbjct: 393 FSIWLISAQPSRSVSL---LQEHDCPAQFIPNPRD----YQAIDKLQINHTPVALKYSGL 445

Query: 643 R--EGLDIPECGLVAILDADKEG 663
              EG  +P   LV + D +  G
Sbjct: 446 AELEGFILPTYRLVVVTDREFYG 468



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 93/254 (36%), Gaps = 23/254 (9%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
             + +SATP    L      I E  +  T    PP   R  +T +     E V   I    
Sbjct: 767  VLTLSATPIPRTLYMSLSGIREMSLITT----PPPTRRPIKTHLAPLSPEIVRSAIRQEL 822

Query: 580  QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
             +G ++   V      E+LT  L E     ++   H  +   E    +     G  D+LV
Sbjct: 823  DRGGQVFYVVPRVEGIEELTANLREMIPGGKFAIAHGRLDESELESTMLTFSNGDADILV 882

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  GLDIP    + I DA + G L     L   +GRA    ++ +           
Sbjct: 883  CTTIIESGLDIPRVNTILIEDAHRFG-LSQLYQLRGRVGRAGIQAHAWLFY-------PK 934

Query: 698  QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV-IDPILLEDAATTNISIDAQQLSLS 756
            Q  + +  R+R + ++   +        +  + ++ I  +     A  +  ++A    L 
Sbjct: 935  QRTLSDAARQRLRAIQEFTQLG---SGYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLY 991

Query: 757  KKKGKAHLKSLRKQ 770
             +  +  ++ +R Q
Sbjct: 992  MEMLEEAIREIRGQ 1005


>gi|294664095|ref|ZP_06729492.1| transcription-repair coupling factor [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292606135|gb|EFF49389.1| transcription-repair coupling factor [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1154

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 103/292 (35%), Gaps = 34/292 (11%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           + +   +++A+  EA   P +V+A +   A Q+ ++        A            P  
Sbjct: 26  SPTALAWSIARAAEAHAGPLLVIARDNQSAHQIEADLHALLGEQAAL----------PVV 75

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIV 295
             P  +T    + S + +I   R +A   L      +V+  V   +  +  +        
Sbjct: 76  PFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTRGVVIVPVQTLLQQLAPLSYIVGGSF 135

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L +G  ++       L    Y+     +  G F V G  +++FP    D   RV +   
Sbjct: 136 DLTVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPM-GADTPLRVELLDE 194

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ I  F P + + +  V+ +K+           ++   +      L+ R         
Sbjct: 195 DIDSIRVFDPESQRSLDKVDAVKMLPGREVPMDDASVERVLAC----LRERFD------- 243

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                 ++ R +   + L++  +   IE Y      +       TLF+Y+ +
Sbjct: 244 ------VDTRRSALYQDLKSGLAPSGIEYYLPMFFAKT-----ATLFDYLDK 284



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I +   H ++   E   ++ D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRDLSELVPEARIGIA--HGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +S+
Sbjct: 890 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVVPDRRSM 930


>gi|262275596|ref|ZP_06053405.1| transcription-repair coupling factor [Grimontia hollisae CIP
           101886]
 gi|262219404|gb|EEY70720.1| transcription-repair coupling factor [Grimontia hollisae CIP
           101886]
          Length = 1154

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 158/426 (37%), Gaps = 55/426 (12%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           ++  + G+    T+A + E   R  +++ P+   A +L  E K F        F  + + 
Sbjct: 20  VVANLHGASLPLTVATLAEQQNRFILMVVPDNQTALKLQPEIKQFTGQE-CHVFPDW-ET 77

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
              + + P  D        I+++I R+     +   + +  +++   + +  +       
Sbjct: 78  LPYDNFSPHQDI-------ISDRIARL----YQLPQQTSGILLIPVSTLMQRVMPHSFLV 126

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q  + +K GD +  ++L   L    Y+  D  I  G +   G  +++FP    +  +R+ 
Sbjct: 127 QHALMVKKGDRLSLEKLRHQLELSGYRHVDQVIEHGEYASRGSILDLFPM-GSNQPYRID 185

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            F ++++ I EF P   +  + +++I +     + T    +             R+   E
Sbjct: 186 FFDDEVDTIREFDPENQRSTQELDSINLLPAHEFPTDDDAVEQF----------RVRWRE 235

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
           +     E + + Q+++              IE +          +   TLF+Y+P+++LL
Sbjct: 236 RFDARREPESIYQQVSK-------KIWPAGIEYWQPLFF-----DKTETLFDYLPKNTLL 283

Query: 472 FVD-ESHVTIPQI--SGMYRGDFHRKATLA---------EYGFRLPSCMDNRP---LRFE 516
               +   +  Q      YR D  R   L          +    L       P   ++F+
Sbjct: 284 VTKGDLEASAKQFLKDADYRYDQRRVDPLRPLLPPNEIWQTIDELFGAFKRYPRIKVQFD 343

Query: 517 EWNCLRPTT-IVVSATP---GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           +       T   VSA P    + +L++  G + +     TG +   VE    R  + D+ 
Sbjct: 344 QTELKAGRTNAPVSALPELTINQQLKEPLGTLRQFTEAFTGKIVFSVETEGRREAMLDLL 403

Query: 573 DEINLA 578
             I + 
Sbjct: 404 ARIKIR 409



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 65/180 (36%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P+  +     +R   + +  + + +     +
Sbjct: 756 ILTLTATPIPRTLNMAMSGMRDLSIIATPPSRRLAIKTFVRERESSL--IREAVLREIMR 813

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E     L E     R    H +++  E   I+ D    +F+VLV  
Sbjct: 814 GGQVYFLHNDIDSIEKTANELAELVPEARITVAHGQMRERELERIMSDFYHQRFNVLVCT 873

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K +  
Sbjct: 874 TIIETGIDVPTANTIIMDRADHLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKRMTK 929


>gi|332993550|gb|AEF03605.1| transcription-repair coupling factor [Alteromonas sp. SN2]
          Length = 1172

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 77/483 (15%), Positives = 163/483 (33%), Gaps = 62/483 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     + +       P +++  +   A +L  E   F P  A        +   P 
Sbjct: 28  LQGSSAALCITQAQAQYNGPIVLVTADTPSALKLEKELAFFMPGGASG--DKSGETNVPI 85

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-NDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R        ++ N   +V   + +  +   +  ++ +
Sbjct: 86  TVFPDWETLPYDSFSPHQDIVSQRLETLYRFTQQVNGIFIVPVNTLMQRLAPTDYLAKYL 145

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L  GD++++ +   +L +  Y      +    F V G  I++FP    D  +R+ +F 
Sbjct: 146 LMLNKGDTLDRDQFRRNLEQAGYLHVSQVMSHSEFSVRGSIIDLFPM-GSDKPFRIDLFD 204

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++++ I  F   T +    VE IK+     + T + ++             R   LEK  
Sbjct: 205 DEVDSIRFFDTETQRSGDTVEKIKLLPAREFPTDKESITLF----------RQRFLEKFD 254

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
               ++ +  ++T              +E Y          +   TLF+Y+   S+L + 
Sbjct: 255 ANNASESVFSQVTK-------GTMPSGVEYYLPLFF-----DKTATLFDYLHPKSVLLL- 301

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
             H  +   S  +  D   +     Y          RPL       L P  + +      
Sbjct: 302 --HGDVQDASEFFWADIQERYEQHRY-------NPARPL-------LPPEDLFLPKNTLF 345

Query: 535 WELEQ------CQGIIVEQ---IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
            E++Q       + +I E+          +D        +   E +   +N A ++G ++
Sbjct: 346 GEIKQWPRVTLTKDVIEEKPGSFNLGCDKLDDIAINTQKKVPAEQLIATVNNAKKRGAKV 405

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L    T+   E L   L +  I+           +  E          ++ + + ++   
Sbjct: 406 LFCAETQGRREGLLTVLQKAGIK----------PKAAESFNTFVSASDNIGITVGMVENS 455

Query: 646 LDI 648
            + 
Sbjct: 456 FNW 458



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 69/180 (38%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         ++    +     + + I     +G 
Sbjct: 776 ILTLTATPIPRTLNMAMSGMRDLSIIATAPARRLSIKTFVQQRNKATIREAIMREILRGG 835

Query: 584 RILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T  R AE++ E + E  I +   H +++  E   ++ D    +++VLV  
Sbjct: 836 QVYFLHNEVDTIARTAEEIAEIVPEARIAMG--HGQMRERELEGVMSDFYHQRYNVLVCT 893

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K +  
Sbjct: 894 TIIETGIDVPSANTIIMDRADHLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKRMTK 949



 Score = 41.6 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 85/233 (36%), Gaps = 33/233 (14%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       LAA QG ++ + V T    ++  E+  +        +  M   +    +
Sbjct: 658 GKTEVAMRAAFLAANQGKQVAILVPTTLLAQQHHENFKDRFAAWPFEIEVMSRFISAKGQ 717

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            E ++ L  GK D++VG + LL   +   + GL+ I +  + G  + +        ++ R
Sbjct: 718 KETMQRLSEGKVDIVVGTHKLLSNDIKFKDLGLLIIDEEHRFGVRQKEKL------KSLR 771

Query: 681 NVNSKVILYADTITKSIQLAID----------ETTRRREKQ---LEHNKKHNINPQSVKE 727
                + L A  I +++ +A+              RR   +    + NK       +++E
Sbjct: 772 ADVDILTLTATPIPRTLNMAMSGMRDLSIIATAPARRLSIKTFVQQRNKA------TIRE 825

Query: 728 KI-MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
            I  E++    +        +I      +++   +A +     QM      L 
Sbjct: 826 AIMREILRGGQVYFLHNEVDTIARTAEEIAEIVPEARIAMGHGQMRE--RELE 876


>gi|229523905|ref|ZP_04413310.1| transcription-repair coupling factor [Vibrio cholerae bv. albensis
           VL426]
 gi|229337486|gb|EEO02503.1| transcription-repair coupling factor [Vibrio cholerae bv. albensis
           VL426]
          Length = 1157

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 110/298 (36%), Gaps = 36/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+     +A++  A     ++  P+   A +L  E    F H+ V  F  + +    +
Sbjct: 26  LHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEV-EQFSHSEVALFPDW-ETLPYD 83

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D        I+++I R+     +         +V   + +      +   Q  +
Sbjct: 84  NFSPHQDI-------ISDRISRL----YQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTL 132

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  F +
Sbjct: 133 IVKRGDHFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMDSSD-PFRIDFFDD 191

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F P   + I  ++ I++     +    PT   A++  +   + R         
Sbjct: 192 EIDTIRTFDPDNQRSIAEMDEIRLLPAHEF----PTTAAAIEEFRNRWRQR--------- 238

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
             EA+R  + +      +        IE +          E   TLF+Y+P +S L V
Sbjct: 239 -FEARREPESV---YSQVSKGTWPAGIEYWQPLFF-----EHSETLFDYLPANSQLLV 287



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 94/270 (34%), Gaps = 29/270 (10%)

Query: 525  TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
             + ++ATP    L     G+    II   P   +     +R +   V  + + +     +
Sbjct: 758  ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSENSV--IREAVLREIMR 815

Query: 582  GLRILLT---VLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            G ++      V T    A DL + + E  I V   H +++  E  +++ D    +F++LV
Sbjct: 816  GGQVYFLHNQVETIDKVAADLEKLVPEARITVA--HGQMRERELEKVMNDFYHQRFNLLV 873

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I
Sbjct: 874  CTTIIETGIDVPTANTIIMDRADSLGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAI 929

Query: 698  QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
                D   R        +        +   +I    + +  E +           + + +
Sbjct: 930  TK--DAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLE 987

Query: 758  KKGKAH-------LKSL-----RKQMHLAA 775
            +  +A        L  L       +M L A
Sbjct: 988  QAVEALKSGKEPALDDLLREQTEVEMRLPA 1017



 Score = 42.4 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 27/230 (11%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A   G ++ + V T    ++  E+  +      IRV  +       E+
Sbjct: 640 GKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQ 699

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            +I++D+  GK D+LVG + LL   +   + GL+ + +  + G  + +        +A R
Sbjct: 700 KQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKV------KAMR 753

Query: 681 NVNSKVILYADTITKSIQLAID----------ETTRRREKQ-LEHNKKHNINPQSVKEKI 729
                + L A  I +++ +A+              RR   +      ++++  ++V  +I
Sbjct: 754 ADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSENSVIREAVLREI 813

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
           M       L +   T   + A    L     +A +     QM      L 
Sbjct: 814 MRGGQVYFLHNQVETIDKVAADLEKLVP---EARITVAHGQMRE--RELE 858



 Score = 37.8 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 76  GEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDN----PLLKNGKIWTPHRSWSI 131
                 S  S   ++  ++ +      V+A  +  +        LL           +  
Sbjct: 531 SSLNLISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKF 590

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAK 187
           +   +    F+    +  + DQ  AI  +L  +  ++   +L+ G  G GKT      A 
Sbjct: 591 HLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAF 650

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           V     +   V+ P  +LA Q +  F++ F +
Sbjct: 651 VATDNGKQVAVLVPTTLLAQQHFENFRDRFAN 682


>gi|33597889|ref|NP_885532.1| transcription-repair coupling factor [Bordetella parapertussis
           12822]
 gi|33574318|emb|CAE38652.1| transcription-repair coupling factor [Bordetella parapertussis]
          Length = 1151

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 78/457 (17%), Positives = 139/457 (30%), Gaps = 62/457 (13%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A A  L  +    +        GSG  + +A +     +P +V+  + + A +L  E  
Sbjct: 12  PATATTLSALKPGARFTQPR-PPGSGDGWLLADLARQASKPLVVLTADPLEAQRLADEIP 70

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-ERNDCI 273
            F P   V               +P  +T      S ++ +   R     +L+ +  D +
Sbjct: 71  QFAPELRV-------------RQLPDWETLPYDAFSPHQDLISQRLRTLHALMNQGVDIL 117

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
            V   + +Y +      +      K  D +++  L + L    Y         G F + G
Sbjct: 118 TVPVTTALYRLAPPAFLAAYTFSFKQKDRLDEAALRAQLTLANYSHVTQVTAPGEFCLRG 177

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I++FP     V +R+ +F ++IE I  F   T + +  V  +++     +       N
Sbjct: 178 GLIDLFPM-GSVVPYRLDLFDDEIESIRSFDVDTQRSLYPVGEVQLLPGREFPMDEEARN 236

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                                R  E    +       + +    +   IE Y        
Sbjct: 237 -----------------RFRARFREVFEGDPSRALPYKGIGNGIAFAGIEYYLPLFF--- 276

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD-FHRKATL-AEYGF-RLPSCMDN 510
             E   TLF+Y+  D++         I      +  D   R   L  +     LP   D 
Sbjct: 277 --EQTATLFDYLSADTITVTVGD---IDDAMQRFAHDTRSRYDFLKVDRERPVLPP--DT 329

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             L  E           ++ T    E           +       DP   +R+   Q   
Sbjct: 330 LFLDHEALFARLKDFPRLALTA---ERSHPDFAAAPDVAVARRADDPVARLRALLAQ--- 383

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
                      G R+LL   +    E L + L E  +
Sbjct: 384 ----------TGDRVLLCADSAGRRETLAQMLGEHGL 410



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 80/202 (39%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +GI    +I   P   +     +R        + + +    ++
Sbjct: 760 VLTLTATPIPRTLGMSLEGIRDFSVIATAPHKRLAIKTFVRREDG--STIREALLRELKR 817

Query: 582 GLRILLT---VLT-KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T       L E + E  I V   H ++   E  ++++     + +VL+
Sbjct: 818 GGQVYFLHNEVETIHNRRARLEELVPEARIAVA--HGQMPERELEQVMKGFYQQRHNVLL 875

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD+ G  +    L Q  GR  R+ + +   Y  T  +  
Sbjct: 876 CTTIIETGIDIPTANTIVIHRADRFGLAQ----LHQLRGRVGRS-HHQAYAYLLTPGED- 929

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
             AI    ++R + ++  ++  
Sbjct: 930 --AITNNAKKRLEAIQAMEELG 949


>gi|224824692|ref|ZP_03697799.1| transcription-repair coupling factor [Lutiella nitroferrum 2002]
 gi|224603185|gb|EEG09361.1| transcription-repair coupling factor [Lutiella nitroferrum 2002]
          Length = 1129

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 89/510 (17%), Positives = 174/510 (34%), Gaps = 90/510 (17%)

Query: 186 AKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242
           A +   +    R  +V+A +   A +L +E   F P   V             A +P  +
Sbjct: 26  AALFARLAGQGRLVLVLAADAQSAQRLKAEIPFFAPDCRV-------------ALLPDWE 72

Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGD 301
           T      S +  +   R +    + +R   +V++ VS  +  +  V         LK   
Sbjct: 73  TLPYDHFSPHADLVSERLATLWQIRQRECDVVIAPVSTAMTRLAPVGYLLGRTFFLKAKT 132

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
            ++  +L + LV   Y      +  G F + G  I++FP     + +R+ +F ++I+ + 
Sbjct: 133 RLDADQLRADLVTAGYAHVTQVMAPGEFSIRGGLIDLFPMGSA-LPYRIDLFDDEIDSLR 191

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
            F P + + +  V  I++     Y +        +   ++  + R+          E   
Sbjct: 192 TFDPDSQRTLYPVPEIRLLPAREYPSD----EAGITAFRQHYRERM----------EGDP 237

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV-------- 473
            + RI  D   +    S   IE +          +   TLF+Y+ ED+L+          
Sbjct: 238 SKSRIYRD---VSAGMSPAGIEYFLPLFF-----DTTATLFDYLGEDALVVTHRDVAGAA 289

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR-FEEWNCLRPTTIVVSATP 532
           D     + +   M RGD  R   LA     L        L+ +  + C         A P
Sbjct: 290 DTFWREVQERHQMARGDTER-PVLAPAEIVLRPDELMAALKPYPRFEC--------PAEP 340

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
                             P+GL    VE R     ++ + D +        R+LL+  + 
Sbjct: 341 A-----------------PSGLPPLAVE-RRTDNPLQKLADFLAGHPG---RVLLSAESL 379

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
              E + ++L E  I+             ++   +   G   + + +  L  G  + E  
Sbjct: 380 GRRETMYQFLSENGIK----------PVPVDNWAEFAGGTMKLALTVAPLFSGFAVAESQ 429

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           L  + +++    +    +      RA  + 
Sbjct: 430 LAIVTESELYQHVARSHTRRAR-ARAGSDA 458



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 75/187 (40%), Gaps = 17/187 (9%)

Query: 525 TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L                P+  +     I      V  + + +    ++
Sbjct: 740 VLTLTATPIPRTLSMALEGLRDFSAITTAPSRRLAVKTFISPLANGV--IREAVLRELKR 797

Query: 582 GLRILLT---VLT-KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T + M E L E L E  I V   H +++  E  +++RD    +F++L+
Sbjct: 798 GGQVFFLHNEVDTIQNMQEKLAELLPEARIGVA--HGQLRERELEQVMRDFLQQRFNLLL 855

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA--DTITK 695
              ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +         D +T+
Sbjct: 856 CSTIIETGIDIPNANTILINRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPDGMTR 911

Query: 696 SIQLAID 702
             Q  ++
Sbjct: 912 DAQKRLE 918


>gi|294625045|ref|ZP_06703694.1| transcription-repair coupling factor [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600675|gb|EFF44763.1| transcription-repair coupling factor [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1154

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 103/292 (35%), Gaps = 34/292 (11%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           + +   +++A+  EA   P +V+A +   A Q+ ++        A            P  
Sbjct: 26  SPTALAWSIARAAEAHAGPLLVIARDNQSAHQIEADLHALLGEQAAL----------PVV 75

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIV 295
             P  +T    + S + +I   R +A   L      +V+  V   +  +  +        
Sbjct: 76  PFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTRGVVIVPVQTLLQQLAPLSYIVGGSF 135

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L +G  ++       L    Y+     +  G F V G  +++FP    D   RV +   
Sbjct: 136 DLTVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPM-GADTPLRVELLDE 194

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ I  F P + + +  V+ +K+           ++   +      L+ R         
Sbjct: 195 DIDSIRVFDPESQRSLDKVDAVKMLPGREVPMDDASVERVLAC----LRERFD------- 243

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                 ++ R +   + L++  +   IE Y      +       TLF+Y+ +
Sbjct: 244 ------VDTRRSALYQDLKSGLAPSGIEYYLPMFFAKT-----ATLFDYLDK 284



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I +   H ++   E   ++ D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRDLSELVPEARIGIA--HGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +S+
Sbjct: 890 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVVPDRRSM 930


>gi|207743032|ref|YP_002259424.1| transcription-repair coupling factor protein [Ralstonia
           solanacearum IPO1609]
 gi|206594429|emb|CAQ61356.1| transcription-repair coupling factor protein [Ralstonia
           solanacearum IPO1609]
          Length = 1147

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 85/528 (16%), Positives = 172/528 (32%), Gaps = 79/528 (14%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAP-NKILAAQLYSEFKNFFPHN 220
           +   ++  +  G+ GS     +A+ +E  +   P + +   N + A +L  E + F P  
Sbjct: 16  VKPGQRF-VFSGLQGSADALLLARYLEQHRATAPMLAVVCANAVDAQRLADELRWFAPQA 74

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVS 279
            V+              +P  +T      S ++ +   R +    L       ++V + +
Sbjct: 75  RVKL-------------LPDWETLPYDNFSPHQDLISERLATLHDLQGGACDLLLVPAST 121

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
            +  I      +      K G+ +++  L +      Y+     +  G + V G  I++F
Sbjct: 122 ALQRIAPPSFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLF 181

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P     + +R+ +FG++IE I  F P T + +  V  +++     +              
Sbjct: 182 PM-GSPMPYRLDLFGDEIETIRAFDPDTQRSLYPVNEVRLLPGREFPMDE---------- 230

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
                  +      GR  E    +       + +        IE Y          E   
Sbjct: 231 -------VARTAFRGRWREVFEGDPTRAPIYKDIGNGVPSAGIEYYLPLFF-----EETA 278

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519
           TLF+Y+P  + L +      I      +  D  ++     +         +RPL      
Sbjct: 279 TLFDYLPATAHLALVGD---IEAAVRRFWADTTQRYNFMRHDR-------DRPLLAPPAL 328

Query: 520 CLRPTTIVVSATP-GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
            L      V+A P     L    G     +  P   V+   E        + + +     
Sbjct: 329 YLDEEAFFVAAKPHARLVLRAEAGDAPLSLPLPNVAVNRRAE--------DPLVNLEAFL 380

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +   R+++   +    E L + L         +H E      +    DL  G+   ++G
Sbjct: 381 MRGNCRVMICAESAGRRETLAQMLAASG-----LHPEG-----VADCADLMGGEARFVLG 430

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +  L +G          IL  ++  F+       Q + R+ R    + 
Sbjct: 431 VAPLYQGF---------ILGDERIAFITETELYAQAVRRSGRRKQEQA 469



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 20/198 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + I    ++
Sbjct: 756 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDSV--LREAILRELKR 813

Query: 582 GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E+    L E + E  + V   H ++   E   ++RD    + ++L+
Sbjct: 814 GGQVYFLHNEVETIENKRAKLEELVPEARVAVA--HGQMHERELERVMRDFVAQRANILL 871

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +    
Sbjct: 872 CTTIIETGIDVPTANTILIHRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLVHDA 924

Query: 698 QLAIDETTRRRE--KQLE 713
           +    +  RR E  +Q+E
Sbjct: 925 EGLTKQAQRRLEAIQQME 942


>gi|148997952|ref|ZP_01825465.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP11-BS70]
 gi|147755962|gb|EDK63005.1| transcription-repair coupling factor [Streptococcus pneumoniae
           SP11-BS70]
          Length = 1118

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 78/527 (14%), Positives = 178/527 (33%), Gaps = 75/527 (14%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++      A  L S+  +      V  F+            P  +  +  +  I  +++
Sbjct: 1   MLLTSTYGEAEGLVSDLISILGEELVYPFLVDDA--------PMVEFLMSSQEKIISRVE 52

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            +R     S   +   +V +  +    + S  ++   IV++ +G+  +Q   +  L +  
Sbjct: 53  ALRFLTDSS---KKGILVCNIAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENG 109

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y++      +G F + GD ++IF     +   R+  FG++I+ I  F   T     N   
Sbjct: 110 YRKVTQVQTQGEFSLRGDILDIFEISQLE-PCRIEFFGDEIDGIRSFEVETQLSKENKTE 168

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           + I+  S  +            +++++   L  + K              +Y  E+L + 
Sbjct: 169 LTIFPASDMLLREKDYQRGQSALEKQISKTLSPILK--------------SYLEEILSSF 214

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ-------ISGMYRG 489
              QS  +  ++L+     +   T+F+YI +D+ +F D+    + Q       ++  +  
Sbjct: 215 HQKQSHADSRKFLSLCY--DKTWTVFDYIEKDTPIFFDDYQKLMNQYEVFERELAQYFTE 272

Query: 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
           +       ++  +             + +    P T   +   G   L+  +     Q  
Sbjct: 273 ELQNSKAFSDMQY--------FSDIEQIYKKQSPVTFFSNLQKGLGNLKFDKIYQFNQYP 324

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
                      ++    Q   + +EI    +    I+L       ++ L + L E  I+ 
Sbjct: 325 -----------MQEFFNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEYQIK- 372

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             + S  KT    E +  +             LR G    +  ++ I + +       + 
Sbjct: 373 --LDSRDKTSICKESVNLIE----------GNLRHGFHFVDEKILLITEHEIFQKKLKRR 420

Query: 670 SLIQTIGRAARNVN-------SKVILYADTITKSIQ-LAIDETTRRR 708
              Q +  A R  +         V+ +   I + +    I+     R
Sbjct: 421 FRRQHVSNAERLKDYNELEKGDYVVHHIHGIGQYLGIETIEIKEIHR 467



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    L+     + ++ATP    L     GI    +I        PV+          + 
Sbjct: 701 ETLKELKKQVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLEKNDSVIR 760

Query: 573 DEINLAAQQGLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++      +  + ++++E L E + E +I   Y+H  +  ++    + D
Sbjct: 761 DAVLREMERGGQVYYLYNKVDTIVQKVSE-LQELIPEASI--GYVHGRMSEVQLENTLLD 817

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G++D+LV   ++  G+DIP    + I +AD  G L +   L   +GR+ R      I
Sbjct: 818 FIEGQYDILVTTTIIETGVDIPNANTLFIENADHMG-LSTLYQLRGRVGRSNR------I 870

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            YA  + +  + +I E + +R + ++
Sbjct: 871 AYAYLMYRP-EKSISEVSEKRLEAIK 895


>gi|314982388|gb|EFT26481.1| transcription-repair coupling factor [Propionibacterium acnes
           HL110PA3]
 gi|315092571|gb|EFT64547.1| transcription-repair coupling factor [Propionibacterium acnes
           HL110PA4]
          Length = 1208

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 82/468 (17%), Positives = 151/468 (32%), Gaps = 66/468 (14%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++      A +  +  K +   ++V Y+ S+ +    E   PRTDT   +   +   
Sbjct: 70  PVLLVTSTFREAEESVATLKTWLGADSVCYYPSW-ETLPHERLSPRTDTVGRRMEVLR-- 126

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
               R   T         +VV+ V  +             V+L +G+  +  EL + LV 
Sbjct: 127 ----RLCGTEG---EVPQVVVAPVRSLLQPQVAGLGRIAPVRLAVGEQHDLTELTTELVN 179

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R D+   RG F V G  +++FP  LE    R+  FG++IEE++ F     +     
Sbjct: 180 AAYSRVDMVERRGEFAVRGGIVDVFPPVLE-HPVRIDFFGDEIEEMTSFAVADQRSTDET 238

Query: 375 ETIKIY-ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
               I       +      + A        K  L +  +   +LE              +
Sbjct: 239 HQELICAPCRELILTDEVRSRA--------KALLTDHPELADMLER-------------I 277

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
               + + +E     L           L + +PE +++ + +  +   + + + R     
Sbjct: 278 GNGQAVEGMEALMPALVDEMEL-----LVDVLPEHAMVVLSDPEMVRSRAADLVRTSEEF 332

Query: 494 KA--------------TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
                            LA  G+R  S    R    E        +     +P +  L  
Sbjct: 333 LGAGWAAAAGGGQAPIDLAASGYR--SLAQVRSHCLERGMAWWSMSSFSLDSPATDVLVD 390

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
                  Q + P       V +      VE    ++      G  +LL    + MA+ ++
Sbjct: 391 DDITSAPQTVNPQ-----LVAVEPWHGDVEAAVKDLTTRLDDGWTVLLCAEGEGMAKRMS 445

Query: 600 EYLYERNIRVRYMHS-------EVKTLERIEIIRDLRLGKFDVLVGIN 640
           E L E N+  R +             + R+            +LV   
Sbjct: 446 ELLGEHNVAARLVDDVDPDATEPCVQVIRLHQRHGFAADSVKLLVAST 493



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 25/205 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--------RTQVEDVYDEIN 576
            + +SATP    LE     I E     T    PP E              QV      I 
Sbjct: 801 VLAMSATPIPRTLEMAVTGIREMSTIAT----PPEERHPVLTFAGPYDEGQV---VAAIR 853

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
               +  ++       +  E     L E     R +  H ++   +  +I+ D    + D
Sbjct: 854 RELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQLEQIMVDFWERRAD 913

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV   ++  G+DI     + I  AD  G  +    L Q  GR  R+       +     
Sbjct: 914 VLVCTTIVESGIDISTANTLLIDRADLMGLSQ----LHQLRGRVGRSRERGYAYFLYPAD 969

Query: 695 KSIQLAIDETTRRREKQLEHNKKHN 719
           K     + +T   R   +  +    
Sbjct: 970 KP----LSQTAHDRLATMAAHTDLG 990


>gi|282853612|ref|ZP_06262949.1| transcription-repair coupling factor [Propionibacterium acnes J139]
 gi|282583065|gb|EFB88445.1| transcription-repair coupling factor [Propionibacterium acnes J139]
          Length = 1209

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 82/468 (17%), Positives = 151/468 (32%), Gaps = 66/468 (14%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++      A +  +  K +   ++V Y+ S+ +    E   PRTDT   +   +   
Sbjct: 71  PVLLVTSTFREAEESVATLKTWLGADSVCYYPSW-ETLPHERLSPRTDTVGRRMEVLR-- 127

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
               R   T         +VV+ V  +             V+L +G+  +  EL + LV 
Sbjct: 128 ----RLCGTEG---EVPQVVVAPVRSLLQPQVAGLGRIAPVRLAVGEQHDLTELTTELVN 180

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R D+   RG F V G  +++FP  LE    R+  FG++IEE++ F     +     
Sbjct: 181 AAYSRVDMVERRGEFAVRGGIVDVFPPVLE-HPVRIDFFGDEIEEMTSFAVADQRSTDET 239

Query: 375 ETIKIY-ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
               I       +      + A        K  L +  +   +LE              +
Sbjct: 240 HQELICAPCRELILTDEVRSRA--------KALLTDHPELADMLER-------------I 278

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
               + + +E     L           L + +PE +++ + +  +   + + + R     
Sbjct: 279 GNGQAVEGMEALMPALVDEMEL-----LVDVLPEHAMVVLSDPEMVRSRAADLVRTSEEF 333

Query: 494 KA--------------TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
                            LA  G+R  S    R    E        +     +P +  L  
Sbjct: 334 LGAGWAAAAGGGQAPIDLAASGYR--SLAQVRSHCLERGMAWWSMSSFSLDSPATDVLVD 391

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
                  Q + P       V +      VE    ++      G  +LL    + MA+ ++
Sbjct: 392 DDITSAPQTVNPQ-----LVAVEPWHGDVEAAVKDLTTRLDDGWTVLLCAEGEGMAKRMS 446

Query: 600 EYLYERNIRVRYMHS-------EVKTLERIEIIRDLRLGKFDVLVGIN 640
           E L E N+  R +             + R+            +LV   
Sbjct: 447 ELLGEHNVAARLVDDVDPDATEPCVQVIRLHQRHGFAADSVKLLVAST 494



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 25/205 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--------RTQVEDVYDEIN 576
            + +SATP    LE     I E     T    PP E              QV      I 
Sbjct: 802 VLAMSATPIPRTLEMAVTGIREMSTIAT----PPEERHPVLTFAGPYDEGQV---VAAIR 854

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
               +  ++       +  E     L E     R +  H ++   +  +I+ D    + D
Sbjct: 855 RELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQLEQIMVDFWERRAD 914

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV   ++  G+DI     + I  AD  G  +    L Q  GR  R+       +     
Sbjct: 915 VLVCTTIVESGIDISTANTLLIDRADLMGLSQ----LHQLRGRVGRSRERGYAYFLYPAD 970

Query: 695 KSIQLAIDETTRRREKQLEHNKKHN 719
           K     + +T   R   +  +    
Sbjct: 971 KP----LSQTAHDRLATMAAHTDLG 991


>gi|261210529|ref|ZP_05924822.1| transcription-repair coupling factor [Vibrio sp. RC341]
 gi|260840314|gb|EEX66885.1| transcription-repair coupling factor [Vibrio sp. RC341]
          Length = 1155

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 113/311 (36%), Gaps = 37/311 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +A++  A     ++  P+   A +L  E    F  + V  F  + +    +
Sbjct: 24  LHGSSLALAIAELANAHTSHTLLAVPDPQTALKLLHEI-EQFSQSEVALFPDW-ETLPYD 81

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D        I+++I R+     +         +V   + +      +   Q  +
Sbjct: 82  NFSPHQDI-------ISDRISRL----YQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTL 130

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  F +
Sbjct: 131 IVKRGDLFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDFFDD 189

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F P   + I  ++ I++     +    PT   A++  +   + R         
Sbjct: 190 EIDTIRTFDPENQRSIAEMDEIRLLPAHEF----PTTAAAIEEFRNRWRQR--------- 236

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD- 474
             EA+R  + I      +        IE +       +      TLF+Y+P +S L V  
Sbjct: 237 -FEARREPESI---YSQVSKGTWPAGIEYWQPLFFDHSE-----TLFDYLPSNSQLLVVG 287

Query: 475 ESHVTIPQISG 485
           E   +I Q   
Sbjct: 288 ELEKSIDQFLA 298



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 94/269 (34%), Gaps = 27/269 (10%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
             + ++ATP    L      + +  I  T        I++   Q ED  + + +     +G
Sbjct: 756  ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSEDSVIREAVLREIMRG 814

Query: 583  LRILLT---VLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++      V T    A DL + + E  I V   H +++  E  +++ D    +F++LV 
Sbjct: 815  GQVYFLHNQVETIDKVAADLEKLVPEARITVA--HGQMRERELEKVMNDFYHQRFNLLVC 872

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I 
Sbjct: 873  TTIIETGIDVPTANTIIMDRADSLGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAIT 928

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
               D   R        +        +   +I    + +  E +           + + ++
Sbjct: 929  K--DAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSIGFTLYMEMLEQ 986

Query: 759  KGKAH-------LKSL-----RKQMHLAA 775
              +A        L  L       +M L A
Sbjct: 987  AVEALKSGKEPALDDLLREQTEVEMRLPA 1015



 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 76  GEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDN----PLLKNGKIWTPHRSWSI 131
                 S  S   ++  ++ +      V+A  +  +        LL           +  
Sbjct: 529 SSLNLISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKF 588

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAK 187
           +   +    F+    +  + DQ  AI  +L  +  ++   +L+ G  G GKT      A 
Sbjct: 589 HLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAF 648

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           V     +   V+ P  +LA Q +  F++ F +
Sbjct: 649 VATDNGKQVAVLVPTTLLAQQHFENFRDRFAN 680


>gi|325122057|gb|ADY81580.1| transcription-repair coupling protein [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 1153

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 76/500 (15%), Positives = 166/500 (33%), Gaps = 71/500 (14%)

Query: 155 AAIAQL-LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
             I+QL L+ + + EK   +  + GS       ++        +V+A N    AQL SE 
Sbjct: 4   QEISQLNLQQLKAGEKR-WVGSLLGSSAALLFKEIAVQHSSLLVVVARNNQHVAQLESEL 62

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           + +     +      ++    +   P  D   E+ + ++              + +   +
Sbjct: 63  EFYGIKPTI---FPDWEILPYDRLSPHQDIVSERLAILSN-------------MPQKGVL 106

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           +VS+ +    +            +++G   + ++    LV+  Y   D     G F V G
Sbjct: 107 LVSASTLAQRVAPYSWVLGEHFDIRVGQKFDLEQQKLRLVQAGYHLVDTVYDHGEFAVRG 166

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++IF +  +D   R+ +F ++I+ +  F P T +    +++  +     +        
Sbjct: 167 SIMDIF-ASGQDAPIRIDLFDDEIDTLKFFDPETQRTTTTLKSFTVLPAKEFPLKEARSI 225

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                     + R  EL       +            + +    +   IE Y      + 
Sbjct: 226 ---------FRDRYSELFPTANPKK--------NPIYQDVLDGIASPGIEFYLPLFFDKT 268

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPS----- 506
             +   TL  Y P++ ++  +    T   ++  ++  F R            LP      
Sbjct: 269 YMQSQSTLTTYFPKNCIVITNNDIDT--DLTSFWKEVFRRYEDRRHNADQPILPPDELFI 326

Query: 507 CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
             +N      ++  +     +VSA       E+  G +  ++ +P  L   P + +    
Sbjct: 327 APNNLLSALNQFPRM-----LVSAEAV----EEKVGALNLKVEQPPKLPVDPKKDKPFAV 377

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            V+   DE N        +LL   +    E L + L             +  +  ++   
Sbjct: 378 -VKKYIDEANHP------VLLVAESAGRRESLRDGLRAS----------LGDIPSVDSFE 420

Query: 627 DLRLGKFDVLVGINLLREGL 646
             +  +F + +    L  GL
Sbjct: 421 QFQKSQFAIAITNAPLDRGL 440



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 97/259 (37%), Gaps = 52/259 (20%)

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
             +  L+ VDE H    +     +        L      +P     R L    ++ +R  
Sbjct: 725 FKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIP-----RTLNMA-FSGMRDL 778

Query: 525 TIVVSATP-------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN- 576
           +I+  ATP        ++  E  +  I E I+R                QV  +++E++ 
Sbjct: 779 SII--ATPPARRLAVKTFVQEHTEASIKEAILRELLR----------GGQVYFLHNEVDT 826

Query: 577 -LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A + +R+L+                E  + V   H +++  E  ++++     +++V
Sbjct: 827 IERAAENIRVLV---------------PEARVAVA--HGQMRERELEQVMQQFYHKEYNV 869

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +  
Sbjct: 870 LVCSTIIETGIDVPNANTILIERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVP 922

Query: 696 SIQLAIDETTRRR-EKQLE 713
           SI+    +  +R    Q  
Sbjct: 923 SIKHLKGDAEKRLDAIQRA 941



 Score = 38.9 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 81/233 (34%), Gaps = 33/233 (14%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q G ++ + V T    ++  E   +   +  +R+  +         
Sbjct: 638 GKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTH 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            + I DL  GK D++VG + LL+E +   + GL+ + +  + G    +        +A R
Sbjct: 698 TKNIEDLAEGKVDIVVGTHKLLQENVQFKDLGLMVVDEEHRFGVRDKERI------KALR 751

Query: 681 NVNSKVILYADTITKSIQLA---------IDETTRRREKQLEHNKKHNINPQSVKEKIME 731
                + L A  I +++ +A         I     RR       ++H       +  I E
Sbjct: 752 ADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEH------TEASIKE 805

Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR-----KQMHLAADNLN 779
            I   LL       +  +   +  + +  +  +   R      QM      L 
Sbjct: 806 AILRELLRGGQVYFLHNEVDTIERAAENIRVLVPEARVAVAHGQMRE--RELE 856


>gi|88705083|ref|ZP_01102795.1| transcription-repair coupling factor [Congregibacter litoralis
           KT71]
 gi|88700778|gb|EAQ97885.1| transcription-repair coupling factor [Congregibacter litoralis
           KT71]
          Length = 1164

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/332 (15%), Positives = 114/332 (34%), Gaps = 52/332 (15%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS  +  +A++    +R  +    +   A  L  E   F P +     +  ++    +
Sbjct: 37  LYGSTASLCIAELAAE-ERLLVAFTEDTAQAQMLARELPFFLPEDCEILQLPDWETLPYD 95

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D   E+  +++      R   T         +++   + +  +          +
Sbjct: 96  NFSPHQDIVSERLRTLH------RLPDT-----HRGVLLLPIAALMQRLPPRHYIEGNSL 144

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L+ G S++ + L ++L K  Y+  D     G F V G  ++I+P     +  R+ +  +
Sbjct: 145 LLEEGQSLDIEALRAALSKSGYRAVDTVYEHGEFAVRGSLMDIYPM-GSKLPLRIDLLDD 203

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ +  F P T + I  +  + +     +                        L+K G 
Sbjct: 204 EIDSLRSFDPETQRTIEKLPRVDLLPAREFP-----------------------LDKPGI 240

Query: 416 LLEAQRLEQRITYDLEM------LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
               QR   R   D +       L    +    E Y          +   +L +Y+PE++
Sbjct: 241 QAFQQRWYARFDVDHDQCPVFTELSDGRAPGGAEYYLPLFF-----DACESLLDYLPENA 295

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
            L     H +    +  +  +  R     +YG
Sbjct: 296 ALLTLGDHYS---AASRFWEEASR--RFTDYG 322



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 7/176 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ-QGL 583
            + ++ATP    L    G + +  I  T            R     +  E  L    +G 
Sbjct: 764 ILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHDHGLIKEAVLRESLRGG 823

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       R  E   + L E   ++ V   H ++   +   ++ D    +  +LV   +
Sbjct: 824 QVFYVHNEVRTIEQCAQGLKELLPDLSVAVAHGQMHETQLERVMSDFYHQRHHILVCSTI 883

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  G+DIP    + I  ADK G  +    L Q  GR  R+ +            ++
Sbjct: 884 IETGIDIPNANTIIIDRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLCPPASAM 935



 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 4/111 (3%)

Query: 116 LLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLL 174
           LL+              +  +D   F     +  + DQ AAI  +   +       +L+ 
Sbjct: 581 LLEVYARREAREGVQFTSPEEDYAKFAAGFPFEETPDQAAAIDAVEADMCGTGVMDRLVC 640

Query: 175 GVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           G  G GKT      A +  A  R   V+ P  +LA Q Y+ F++ F +  V
Sbjct: 641 GDVGFGKTEVAMRAAFIATANARQVAVLVPTTLLAQQHYNSFRDRFANWPV 691


>gi|331003611|ref|ZP_08327107.1| hypothetical protein HMPREF0491_01969 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412331|gb|EGG91723.1| hypothetical protein HMPREF0491_01969 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 436

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 108/271 (39%), Gaps = 21/271 (7%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A    L + I   +    +  +   GK   ++++++  +   +V++ ++  A++LY +  
Sbjct: 12  ADFESLEENIKKEKFPLQVSDMAEPGKAHLISELMKEERPWKLVISYDEDNASRLYEDIG 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            F   + V  +             P  D         + QI   R    + L E    ++
Sbjct: 72  CFL--DDVYLY-------------PARDLLFFNADIRSLQITAKRVEVWKHLREDAGGVI 116

Query: 275 VSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V++   +   +   + + +  +++K  D+V+ ++L   L    Y+R       G F + G
Sbjct: 117 VTTADALMDKLEDYQKFCETTMEIKKEDTVDIEKLAKKLTDIGYERSFETGNPGQFSIRG 176

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+IFP   E+   R+ ++ ++I+ +  F P + + I  +E + IY             
Sbjct: 177 GIIDIFP-LTEEYPVRIELWDDEIDAMKSFDPASQRSIDELEYVNIYPARERELGGEQSF 235

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQ 424
                   + K  LI +++  R LE  R  +
Sbjct: 236 LRYF----DYKKTLIYIDEPARTLEKARKTE 262


>gi|296102868|ref|YP_003613014.1| transcription-repair coupling factor [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057327|gb|ADF62065.1| transcription-repair coupling factor [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 1148

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/333 (16%), Positives = 124/333 (37%), Gaps = 42/333 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + + ++ QL  G +TG+     +A++ E    P +++AP+   A +L+ E +  F  N V
Sbjct: 11  VKAGDQRQL--GELTGAACATLVAEIAERHPGPVVLVAPDMQNALRLHDEIRQ-FTDNLV 67

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                + +    +++ P  +    + S++ +     R             ++V   + + 
Sbjct: 68  FSLADW-ETLPYDSFSPHQEIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQ 115

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +          + +K G  + + +L + L    Y+  D  +  G +   G  ++++P  
Sbjct: 116 RVCPHSYLHGHALVMKKGQRLSRDDLRAQLDSAGYRHVDQVMEHGEYATRGALLDLYPM- 174

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
             D  +R+  F ++I+ +  F   T + +  VE I +     +    PT  TA++  + +
Sbjct: 175 GSDQPYRLDFFDDEIDSLRVFDADTQRTLEEVEAINLLPAHEF----PTDKTAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            + +                     +  + +        IE +          EP P LF
Sbjct: 231 WRDKFDVKRDA-------------EHIYQQVSKGTLPAGIEYWQPLF----FNEPLPALF 273

Query: 463 EYIPEDSLLF----VDESHVTIPQISGMYRGDF 491
            Y P ++L+     +D S       +     + 
Sbjct: 274 SYFPANTLIVNTGDIDASASRFESETRARFENR 306



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDNLV--VREAILREVLR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ A+ L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAADRLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|254427874|ref|ZP_05041581.1| transcription-repair coupling factor [Alcanivorax sp. DG881]
 gi|196194043|gb|EDX89002.1| transcription-repair coupling factor [Alcanivorax sp. DG881]
          Length = 1159

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 110/328 (33%), Gaps = 43/328 (13%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G+        +A++  +     +++APN   A QL      +   +             P
Sbjct: 22  GLNAGSMAAVLAELARSEDHLFVILAPNSSRAQQLTDSLSFYLAGSD-----------TP 70

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSL-LERNDCIVVSSVSCIYGIGSVESYSQM 293
               P  +T      S ++ I   R      L       +VV   + +  +      +  
Sbjct: 71  VMLFPDWETLPYDLFSPHQDIISDRIQVLHQLPTTHKGILVVPVNTLMQRLAPPIHITGN 130

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
              LK+GD  + +   S LV   Y+++D     G F V G  ++I+P   E   +R+ +F
Sbjct: 131 SFLLKVGDRFDMEATRSRLVASGYRQRDNVYEHGEFAVRGAIMDIYPMGAE-QPFRIELF 189

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
            ++IE +  F   + +    V+ I +   + +      +             R    +  
Sbjct: 190 DDEIESLRLFEAESQRSTGKVDDITLLPAAEFPLSAEGIARF----------RSNFRDTF 239

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLF 472
                   L Q +T          +   +E Y          E   TLF+Y+P+D  L+ 
Sbjct: 240 DVDTRHVPLYQDVT-------DGLAAPGLEYYLPLFF-----EQMATLFDYLPDDVRLVE 287

Query: 473 VDESHVT-------IPQISGMYRGDFHR 493
           + +           + Q     R D HR
Sbjct: 288 LADCQNATEHFWQDVEQRHESRRHDIHR 315



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 67/186 (36%), Gaps = 10/186 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T      + +++   Q  D  + + +     +G
Sbjct: 757 ILTLTATPIPRTLNMAMSGMRDISIIAT-PPQKRLSVKTFVQQHNDTAIKEALLRELLRG 815

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E     + +     R    H +++  E   ++ D    +F+VLV   
Sbjct: 816 GQVYYLHNDIDTMEKTAADIRKLVPDARVGIAHGQMRERELEAVMSDFYHRRFNVLVSTT 875

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL- 699
           ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K +   
Sbjct: 876 IIETGIDVPSANTIIIDRADKLGLAQ----LHQLRGRVGRSHHQAYAYLITPSPKVMTKD 931

Query: 700 AIDETT 705
           AI    
Sbjct: 932 AIKRLE 937



 Score = 44.7 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 33/233 (14%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A +   ++ + V T    ++  E  T+   +  + +  +       E+
Sbjct: 639 GKTEVAMRAAFVAVENQTQVAVLVPTTLLAQQHYESFTDRFADWPVNIEVLSRFRSAKEK 698

Query: 622 IEIIRDLRLGKFDVLVGI-NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            ++++ L+ GK D+LVG   LL+E +     GL+ + +  + G +R K  L Q      R
Sbjct: 699 TQVLQRLKEGKVDILVGTHQLLQETVAFDNLGLIIVDEEHRFG-VRHKERLKQM-----R 752

Query: 681 NVNSKVILYADTITKSIQLA---------IDETTRRREKQLEHNKKHNINPQSVKEKIME 731
                + L A  I +++ +A         I    ++R       ++HN         I E
Sbjct: 753 AECDILTLTATPIPRTLNMAMSGMRDISIIATPPQKRLSVKTFVQQHNDT------AIKE 806

Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR-----KQMHLAADNLN 779
            +   LL       +  D   +  +    +  +   R      QM      L 
Sbjct: 807 ALLRELLRGGQVYYLHNDIDTMEKTAADIRKLVPDARVGIAHGQMRE--RELE 857



 Score = 41.2 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 53/155 (34%), Gaps = 4/155 (2%)

Query: 72  TASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSI 131
             S     S+     +    R  +EQ      +A  ++      LL              
Sbjct: 530 PVSSLHLISRYGGGDTAPLNRLGTEQWTKARQKAAEKIHDVAAELLNTYARREAREGRQF 589

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAK 187
           +    D   F     +  + DQ AAIA ++  + S +   +L+ G  G GKT      A 
Sbjct: 590 DVDLNDYDRFSAAFPFEETPDQQAAIASVVADMQSSQPMDRLVCGDVGFGKTEVAMRAAF 649

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           V    Q    V+ P  +LA Q Y  F + F    V
Sbjct: 650 VAVENQTQVAVLVPTTLLAQQHYESFTDRFADWPV 684


>gi|28897749|ref|NP_797354.1| transcription-repair coupling factor [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260363824|ref|ZP_05776579.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           K5030]
 gi|260876916|ref|ZP_05889271.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           AN-5034]
 gi|260897942|ref|ZP_05906438.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           Peru-466]
 gi|260903477|ref|ZP_05911872.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           AQ4037]
 gi|28805962|dbj|BAC59238.1| transcription-repair coupling factor [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085487|gb|EFO35182.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           Peru-466]
 gi|308093632|gb|EFO43327.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           AN-5034]
 gi|308110343|gb|EFO47883.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           AQ4037]
 gi|308113858|gb|EFO51398.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           K5030]
          Length = 1153

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 97/536 (18%), Positives = 192/536 (35%), Gaps = 71/536 (13%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +       +K Q L  + G+     +A++ +     ++++ P+  +A +L +E + F
Sbjct: 6   ILSVTNPTERGDKKQ-LGNLPGAALPLAIAELAKQHSSHSLLVVPDPQIALKLQAEIEQF 64

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                           QP +  P  +T      S +++I   R +    L  +   + + 
Sbjct: 65  TD--------------QPVSLFPDWETLPYDNFSPHQEIISDRIARLYQLPNQRGGVTIV 110

Query: 277 SVSCIYGIGSVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            VS +    S   +  Q  + +K GD+   + L   L    Y+  D     G +   G  
Sbjct: 111 PVSTVLQRQSPRDFLLQHTLMVKTGDNFSLENLRVQLENSGYRHVDQVFGPGEYASRGSI 170

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +++FP    D  +R+  F ++I+ I  F P   + I +++ I++     + T +     A
Sbjct: 171 LDLFPMGSAD-PYRIDFFDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEFPTTKE----A 225

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++  +   + +           EA+R  + I      +        IE +          
Sbjct: 226 IEDFRTRWRTQ----------FEARREPESIYM---QVTKGTWPAGIEYWQPLFF----- 267

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL-- 513
           +   TLF+Y+PEDS L       T   I        +      EY +        RPL  
Sbjct: 268 DHTETLFDYLPEDSQLI------TYGDIEAAVDTFLND----VEYRYDQKKIDPLRPLLA 317

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
             + W             P +   +     +V++  R    V    E+   + Q ++   
Sbjct: 318 PHDLWLKKDELFAHFKQLPQA---QLSLEKVVKRAGRQNLAVQTLAEL-GVQQQNKEPLS 373

Query: 574 EINLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            +   ++Q   +I+ +V ++   E LTE L  + I+VR        + +  +   L    
Sbjct: 374 RLRQFSEQFTGKIIFSVESEGRREALTELL--QGIKVR-------PVVQESLYHALESDH 424

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              L+       G    E     I ++D  G       +IQ   +  + VNS  ++
Sbjct: 425 RFTLIL-GSAEHGFIHDELNFALICESDLLG-----DRVIQRRRKDKKAVNSDTVI 474



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 16/187 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + +     +
Sbjct: 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVREREESV--VREAVLREIMR 811

Query: 582 GLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T  + AEDL + + E  I V   H +++  E   I+ D    +F+VLV
Sbjct: 812 GGQVYFLHNQVETIEKTAEDLQKLIPEARITVA--HGQMRERELERIMNDFYHQRFNVLV 869

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 870 CTTIIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAM 925

Query: 698 QL-AIDE 703
              AI  
Sbjct: 926 TKDAIKR 932


>gi|258544293|ref|ZP_05704527.1| transcription-repair coupling factor [Cardiobacterium hominis ATCC
           15826]
 gi|258520473|gb|EEV89332.1| transcription-repair coupling factor [Cardiobacterium hominis ATCC
           15826]
          Length = 560

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 111/331 (33%), Gaps = 40/331 (12%)

Query: 182 TFTMAKVIEAMQRP--AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239
            F    +     R    +++AP+       Y   K +    A  Y+ S ++    + Y P
Sbjct: 4   PFLPYNLSRRPDRKHVQLLVAPDARTGEYWYENLKYWLADPASLYWFSDWETLPYDQYTP 63

Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMIVQLK 298
             D   E            R      L  R   IV++S + +   +       +  + L 
Sbjct: 64  HPDLVAE------------RLRVLAELPTRTHGIVIASAAALRQRLCPQTHLDKYGIHLA 111

Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGII-RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           +GD + +  L+  L    Y+R    I  +G +   G+ ++++P +  D   R+  F + I
Sbjct: 112 VGDRLARDGLIQRLNDAGYQRSAHHISGKGEYAARGNIVDLYPMNAAD-PIRLEWFDDQI 170

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           + I  F     + +  + +I I   S                            +  RL 
Sbjct: 171 DSIRTFAVADQRTLEKLSSISILPRSELDLSDAGRTC---------------YRQNARLH 215

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL-LFVDES 476
             +++    +     +    + Q +E Y          +   TLF+Y+P +SL L  D+ 
Sbjct: 216 YGEKIVD--SPLYRQISDGQTPQGLEYYLPLFY-----DDTATLFDYLPPNSLHLACDDL 268

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
              + Q +      + R   L E     P  
Sbjct: 269 PALLEQHANWCEQRYRRTNPLRENRLLPPDA 299


>gi|116328533|ref|YP_798253.1| transcription-repair coupling factor [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331261|ref|YP_800979.1| transcription-repair coupling factor [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121277|gb|ABJ79320.1| Transcription-repair coupling factor [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124950|gb|ABJ76221.1| Transcription-repair coupling factor [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 1176

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 81/505 (16%), Positives = 175/505 (34%), Gaps = 74/505 (14%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           +  VT    +   + + + + R  +V++ N   A  L+ E  +F   + +          
Sbjct: 59  VYSVTEGSHSILASSLFQKLNRTIVVVSENNTAAEFLFREALSFISASDLV--------- 109

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC-IYGIGSVESYS 291
               Y+P  +    +      ++ R R  A   +L     ++ +SV+  +  +  V++  
Sbjct: 110 ----YLPGQEVLPYEYLRYPSEMKRERIKAIGKILNGGPSLIFTSVAGFLKTLPPVQTMQ 165

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L+ G  ++ + LL  L+   YKR D+    G F + G  ++I+ S+ ++   R+ 
Sbjct: 166 GRAITLEKGKEIDLESLLIQLIDLGYKRTDVCETFGEFSLKGGILDIYSSYSQE-PVRID 224

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +FG +IE I  F P T + + ++    +     Y+             K+E +  L    
Sbjct: 225 LFGEEIESIRTFDPDTQRSMVDLNRAVLLPVDEYILSDEQ--------KKEYQNILKYYS 276

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
               + E                  G     E     +   +       +  Y  E  +L
Sbjct: 277 SSLHIPEIP--------------EAGYGIYYEELVPLVRENHG------ILSYFSEPPIL 316

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
                +    +I  + R         ++    L +  D      EE+  L          
Sbjct: 317 LFPSPNSVNQRILHLEREYLSLFEKRSQ--EVLCAPPDKLLSFGEEFRVL---------- 364

Query: 532 PGSWELEQCQGIIVEQIIRP----TGLVDPPVEIRSARTQVEDVYDEINL-AAQQGLRIL 586
                    + + +  +  P    + LV    E  + + ++ +V ++I+   A+ G +I+
Sbjct: 365 --------SELVGLSFVGLPPRNGSDLVSCLKEAPAFKGKIREVREKISELRAEGGWKIV 416

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           LT   +   + L     +  I    + +E  T      +   +   F VL   + LR G 
Sbjct: 417 LTSSFEAQTKRLQGLFEKEGIV---LLNEGATEPIPFHLGKHKSDAFLVL---SELRNGF 470

Query: 647 DIPECGLVAILDADKEGFLRSKTSL 671
                 ++ + + D  G    + + 
Sbjct: 471 IFENQKILILSENDIFGREYKRKTR 495



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 7/167 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      I E  II         VE        + + + I    Q+  
Sbjct: 783 VLTLTATPIPRTLHMALTGIRELSIIATPPKNRQSVETYVLEEDEDLIAEAIRNEIQRDG 842

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E  T+YL E    + +  +H ++   E  E + D    K+D+LV   +
Sbjct: 843 QVFYLYNRVETIEQETKYLGEIVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTI 902

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +  G+D+P    + +  AD  G  +    L Q  GR  R+       
Sbjct: 903 IESGIDMPNVNTLFVKRADLFGLSQ----LYQIRGRVGRSDRKAFAY 945


>gi|328473273|gb|EGF44121.1| transcription-repair coupling factor [Vibrio parahaemolyticus
           10329]
          Length = 1153

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 95/536 (17%), Positives = 187/536 (34%), Gaps = 71/536 (13%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +       +K Q L  + G+     +A++ +     ++++ P+  +A +L +E + F
Sbjct: 6   ILSVTNPTERGDKKQ-LGNLPGAALPLAIAELAKQHSSHSLLVVPDPQIALKLQAEIEQF 64

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                           QP +  P  +T      S +++I   R +    L  +   + + 
Sbjct: 65  TD--------------QPVSLFPDWETLPYDNFSPHQEIISDRIARLYQLPNQRGGVTIV 110

Query: 277 SVSCIYGIGSVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            VS +    S   +  Q  + +K GD+   + L   L    Y+  D     G +   G  
Sbjct: 111 PVSTVLQRQSPRDFLLQHTLMVKTGDNFSLENLRVQLENSGYRHVDQVFGPGEYASRGSI 170

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +++FP    D  +R+  F ++I+ I  F P   + I +++ I++     + T +     A
Sbjct: 171 LDLFPMGSAD-PYRIDFFDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEFPTTKE----A 225

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           ++  +   + +        R        Q                 IE +          
Sbjct: 226 IEDFRTRWRTQFE-----ARREPESIYMQVTKRTW--------PAGIEYWQPLFF----- 267

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL-- 513
           +   TLF+Y+PEDS L       T   I        +      EY +        RPL  
Sbjct: 268 DHTETLFDYLPEDSQLI------TYGDIEAAVDTFLND----VEYRYDQKKIDPLRPLLA 317

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
             + W             P +   +     +V++  R    V    E+   + Q ++   
Sbjct: 318 PHDLWLKKDELFAHFKQLPQA---QLSLEKVVKRAGRQNLAVQTLAEL-GVQQQNKEPLS 373

Query: 574 EINLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            +   ++Q   +I+ +V ++   E LTE L  + I+VR        + +  +   L    
Sbjct: 374 RLRQFSEQFTGKIIFSVESEGRREALTELL--QGIKVR-------PVVQESLYHALESDH 424

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              L+       G    E     I ++D  G       +IQ   +  + VNS  ++
Sbjct: 425 RFTLIL-GSAEHGFIHDELNFALICESDLLG-----DRVIQRRRKDKKAVNSDTVI 474



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 16/187 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + +     +
Sbjct: 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVREREESV--VQEAVLREIMR 811

Query: 582 GLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T  + AEDL + + E  I V   H +++  E   I+ D    +F+VLV
Sbjct: 812 GGQVYFLHNQVETIEKTAEDLQKLIPEARITVA--HGQMRERELERIMNDFYHQRFNVLV 869

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 870 CTTIIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAM 925

Query: 698 QL-AIDE 703
              AI  
Sbjct: 926 TKDAIKR 932


>gi|291166313|gb|EFE28359.1| transcription-repair coupling factor [Filifactor alocis ATCC 35896]
          Length = 1124

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 82/528 (15%), Positives = 171/528 (32%), Gaps = 80/528 (15%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           ++   I   +    + G     +    A ++E +++  + +  +K        E      
Sbjct: 16  KIDTAISKGQFPISVDGFLTEQRILHTAYLVEKLRKKIVFVVSSKKEVND-CKEAFEKMN 74

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
            N V        +Y  +A     D         +E I  M       L    D ++VS  
Sbjct: 75  LNVVTIDTESIRFYHIDAKDHEKD---------SENIRTMA----SLLYGEYDILLVSGE 121

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
                    + + + I  + +G   +++EL   LV   Y R+      G F + G  ++I
Sbjct: 122 ELNRKYMPPKRFKESIYSVSLGQICDREELCHKLVSLGYTREYKVEGVGQFSIRGGIVDI 181

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           +   + +  +R+  F ++I+ I  F   + + + N +   IY  +  + P          
Sbjct: 182 YSPSMTN-PYRIEFFDDEIDSIRTFDVFSQKSLENEKRAVIYPAASLLYPDSVEFKIPH- 239

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
            +E+L   L +                   ++ ML  +   + +E Y   L G+      
Sbjct: 240 -EEDLNDPLSD-------------------EVRMLNDSVYFEGMEKYVDLLYGKES---- 275

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
            +L EY  ED L+ + +S+  + +I  +            E    L S            
Sbjct: 276 VSLLEYCDEDILVIMVDSNRVLERIENIQDEFSESFKISLEKRETLKS----------CG 325

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL--VDPPVEIRS-------ARTQVE 569
           N L  T +V        E +     ++     P  L    P   + S        + ++ 
Sbjct: 326 NLLWGTAVV--------ERQLSDRALLLHSYFPKKLTYFKPKALVHSDTRSSIQFQGRLN 377

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           +  +E+    ++   I +    +    ++ + L         + S +  +   E      
Sbjct: 378 EFVEELLYLIKEDYIIFILDCNENSFSNIYQKL---------LDSGIHPILLQERTTYFE 428

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
            G   V++    L +G    +  +      D     + K S    IG+
Sbjct: 429 NGA--VVMHSCYLEKGFLFTDAKVAFYTGNDIFQNRKKKQSR--KIGK 472



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 71/191 (37%), Gaps = 11/191 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      I E  I      D  P+       +   + D I+    +G 
Sbjct: 760 CLTLSATPIPRTLHLSLSGIREMSILNEPPQDRHPIVTYVTEAKSNIIADAIDRELARGG 819

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   L E   +  +   H ++ + +  +I+ D    ++DVLV   +
Sbjct: 820 QVFFVYNRVETIDKIHTLLKELVPDADIAVAHGQMPSRKLEQIMVDFLNREYDVLVCTTI 879

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + + DADK G  +    L Q  GR  R+       +        +  +
Sbjct: 880 IETGMDISNANTMIVYDADKMGLSQ----LYQLRGRVGRSSKQGYAYFMY----EKEKVL 931

Query: 702 DETTRRREKQL 712
            E   +R K +
Sbjct: 932 TEIAEKRLKTI 942



 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 15/151 (9%)

Query: 71  NTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWS 130
           N+A +    S+   S   K+++  +++ +    Q L  L                 + +S
Sbjct: 543 NSAEQAYKLSKLG-SSDWKKSKARTKKAVEAIAQDLVELYAVRENE----------KGYS 591

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKT-FTMAKV 188
               +     F+    Y  + DQ  AI ++ + +  SR   +LL G  G GKT   +  +
Sbjct: 592 FQEDTVWQREFEDAFPYEETDDQLKAIEEVKRDMESSRVMDRLLCGDVGYGKTEVAIRAI 651

Query: 189 IEAM--QRPAIVMAPNKILAAQLYSEFKNFF 217
            +A    +  + + P  ILA Q Y   K  F
Sbjct: 652 FKACMDGKQVVFLVPTTILAQQHYVTIKERF 682


>gi|258621368|ref|ZP_05716402.1| transcription-repair coupling factor [Vibrio mimicus VM573]
 gi|258586756|gb|EEW11471.1| transcription-repair coupling factor [Vibrio mimicus VM573]
          Length = 1156

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 113/311 (36%), Gaps = 37/311 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +A++  A     ++  P+   A +L  E    F  + V  F  + +    +
Sbjct: 24  LHGSSLALAIAELANAHTSHTLLAVPDPQTALKLLHEV-EQFSQSEVALFPDW-ETLPYD 81

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D        I+++I R+     +         +V   + +      +   Q  +
Sbjct: 82  NFSPHQDI-------ISDRISRL----YQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTL 130

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  F +
Sbjct: 131 IVKRGDLFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDFFDD 189

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F P   + I  ++ I++     +    PT   A++  +   + R         
Sbjct: 190 EIDTIRTFDPENQRSIAEMDEIRLLPAHEF----PTTAAAIEEFRNRWRQR--------- 236

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD- 474
             EA+R  + I      +        IE +       +      TLF+Y+P +S L V  
Sbjct: 237 -FEARREPESI---YSQVSKGTWPAGIEYWQPLFFDHSE-----TLFDYLPSNSQLLVVG 287

Query: 475 ESHVTIPQISG 485
           E   +I Q   
Sbjct: 288 ELEKSIDQFLA 298



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 72/181 (39%), Gaps = 13/181 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q ED  + + +     +G
Sbjct: 756 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSEDSVIREAVLREIMRG 814

Query: 583 LRILLT---VLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++      V T    A DL + + E  + V   H +++  E  +++ D    +F++LV 
Sbjct: 815 GQVYFLHNQVETIDKVAADLEKLVPEARVTVA--HGQMRERELEKVMNDFYHQRFNLLVC 872

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I 
Sbjct: 873 TTIIETGIDVPTANTIIMDRADSLGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAIT 928

Query: 699 L 699
            
Sbjct: 929 K 929


>gi|84386598|ref|ZP_00989624.1| transcription-repair coupling factor [Vibrio splendidus 12B01]
 gi|84378404|gb|EAP95261.1| transcription-repair coupling factor [Vibrio splendidus 12B01]
          Length = 1153

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 89/520 (17%), Positives = 188/520 (36%), Gaps = 76/520 (14%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +A++ E      ++  P+  +A +L SE + F  H                
Sbjct: 24  LVGSSLALAIARLAEQHNSHTLLAVPDPQIALKLQSEIEQFTSHEV-------------- 69

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS-QMI 294
           A  P  +T      S +++I   R +   +L    D I +  +S +    S   +  Q  
Sbjct: 70  ALFPDWETLPYDSFSPHQEIISDRIARLYALPTLKDGITIVPISTLLQRQSPRDFLLQHT 129

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K GD    ++L   L K  Y+  D     G +   G  +++FP   +D  +R+  F 
Sbjct: 130 LMVKTGDLYSLEKLRLQLEKSGYRYVDQVFGPGEYASRGSILDLFPMGSKD-PYRIDFFD 188

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P   + I ++  I++     +    PT  +A++        R+   ++  
Sbjct: 189 DEIDTIRTFDPENQRSIEDISEIRLLPAHEF----PTSESAIEDF------RIRWRQQFD 238

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
              E + +  +++              IE +          +   TLF+Y+ +++ + V 
Sbjct: 239 ARREPESVYMQVSK-------GTWPAGIEYWQPLFF-----DHTETLFDYVADEAQILVL 286

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP-- 532
               T   +        HR                 RPL       L+P  + +      
Sbjct: 287 GDVET--AVDSFLTDVSHRYEQR--------GVDPLRPL-------LKPEQLWLQKDELF 329

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS---ARTQVEDVYDEINLAAQQ-GLRILLT 588
             ++ +    + ++ I    G  + PV        + Q ++    +    +    +++ +
Sbjct: 330 AHFKQKPQVNLSLDSIEEKAGRTNLPVVSLPDLSVQHQNKEPLSNLRKFTEAFDGKVVFS 389

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V ++   E L+E L  R I+VR           +E +     GK    + +     G   
Sbjct: 390 VESEGRREALSELL--RGIKVR--------PSEVENLDAAIKGKDKFTLILGSAEHGFIH 439

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            E  +  + ++D  G       ++Q   +  ++VNS  ++
Sbjct: 440 EEQNIALVCESDLLG-----DRVVQRRKKDKKSVNSDTVI 474



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 66/180 (36%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R +   +  V + +     +
Sbjct: 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRESDDAI--VREAVLREIMR 811

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E   E L +     R    H +++  E   I+ D    +F++LV  
Sbjct: 812 GGQVYFLHNQVDTIEKTAESLQKLIPEARVTVAHGQMRERELERIMNDFYHQRFNLLVCT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K++  
Sbjct: 872 TIIETGIDVPTANTILMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAMTK 927


>gi|297518235|ref|ZP_06936621.1| transcription-repair coupling factor [Escherichia coli OP50]
          Length = 542

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283


>gi|241663171|ref|YP_002981531.1| transcription-repair coupling factor [Ralstonia pickettii 12D]
 gi|240865198|gb|ACS62859.1| transcription-repair coupling factor [Ralstonia pickettii 12D]
          Length = 1143

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 84/535 (15%), Positives = 169/535 (31%), Gaps = 78/535 (14%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQR--PAIVMAP-NKILAAQLYSEFKNFFPHNAVEYFVSY 228
           +  G+ G+     +A+ +E  +   P + +   N + A +L  E + F P   V+     
Sbjct: 19  VFSGLQGAADALLLARYLEQHRATVPMLAVVCANAVDAQRLAEELRWFAPQARVKL---- 74

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSV 287
                    +P  +T      S ++ +   R +    L       ++V + + +  +   
Sbjct: 75  ---------LPDWETLPYDNFSPHQDLISERLATLHDLQNGACDILLVPASTALQRVAPP 125

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
              +      K G+ +++  L +      Y+     +  G + V G  I++FP     + 
Sbjct: 126 SFLAAYTFFFKKGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPM-GSPLP 184

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
           +R+ +FG++IE I  F P T + +  V  +++     +     +                
Sbjct: 185 YRLDLFGDEIETIRSFDPDTQRSLYPVNEVRLLPGREFPMDEASRTAF------------ 232

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                 GR  E    +   +   + +        IE Y          E   TLF+Y+P 
Sbjct: 233 -----RGRWREVFEGDPTRSPIYKDIGNGVPSAGIEYYLPLFF-----EETATLFDYLP- 281

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
                +         +   +     R      +          RPL       L      
Sbjct: 282 -GATHLAFVGDIEGAVRRFWADTTQRY-NFMRHDRE-------RPLLQPSALYLDEEAFF 332

Query: 528 VSATP-GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
           V+A P     L    G     +  P   V+   E        + + +  +   +   R++
Sbjct: 333 VAAKPHARLVLRAEPGDAPLSLPLPNVAVNRRAE--------DPLVNLESFLMRSNCRVM 384

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +   +    E L + L         +H E      +    DL  G    ++G+  L +G 
Sbjct: 385 ICAESAGRRETLAQMLTASG-----LHPEG-----VADFADLMSGDAKFVLGVAPLYQGF 434

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
                    IL  ++   +       QT+ RA R    +       +    +L I
Sbjct: 435 ---------ILGDERVALITETELYAQTVRRAGRRKQEQATAVDSMVRDLAELKI 480



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 18/197 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  +  T      + I++   + ED  + + I    ++G
Sbjct: 752 VLTLTATPIPRTLGMALEGLRDFSVIAT-APQKRLAIKTFLRREEDGVLREAILRELKRG 810

Query: 583 LRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++          E+    L E + E  + V   H ++   E   ++RD    + ++L+ 
Sbjct: 811 GQVYFLHNEVETIENKRAKLEELIPEARVVVA--HGQMHERELERVMRDFVAQRANILLC 868

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +             + 
Sbjct: 869 TTIIETGIDVPTANTILIHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDVDGLT 924

Query: 699 LAIDETTRRRE--KQLE 713
               +  RR E  +Q+E
Sbjct: 925 K---QAQRRLEAIQQME 938


>gi|167771501|ref|ZP_02443554.1| hypothetical protein ANACOL_02871 [Anaerotruncus colihominis DSM
           17241]
 gi|167666141|gb|EDS10271.1| hypothetical protein ANACOL_02871 [Anaerotruncus colihominis DSM
           17241]
          Length = 109

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 55/94 (58%), Positives = 69/94 (73%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ + + P+GDQP AI +L  GI +    Q LLGVTGSGKTFTMA +IE + RP +
Sbjct: 6   VDKFKLVSPFKPTGDQPEAIEKLTHGILAGAHEQTLLGVTGSGKTFTMANIIERVNRPTL 65

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           ++A NK LAAQL SEF+ FFP NAVEYFVSYY Y
Sbjct: 66  ILAHNKTLAAQLCSEFREFFPENAVEYFVSYYHY 99


>gi|21243585|ref|NP_643167.1| transcription-repair coupling factor [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21109155|gb|AAM37703.1| transcription-repair coupling factor [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 1154

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 104/292 (35%), Gaps = 34/292 (11%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           + +   +++A+  EA   P +V+A +   A Q+ ++       ++            P  
Sbjct: 26  SPTALAWSIARAAEAHAGPLLVIARDNQSAHQIEADLHALLGEHSAL----------PVV 75

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIV 295
             P  +T    + S + +I   R +A   L      +V+  V   +  +  +        
Sbjct: 76  PFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTRGVVIVPVQTLLQQLAPLSYIVGGSF 135

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L +G  ++       L    Y+     +  G F V G  +++FP    D   RV +   
Sbjct: 136 DLTVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPM-GADTPLRVELLDE 194

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ I  F P + + +  V+ +K+           ++   +      L+ R         
Sbjct: 195 DIDSIRVFDPESQRSLDKVDAVKMLPGREVPMDDASIERVLAC----LRERFD------- 243

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                 ++ R +   + L++  +   IE Y      +       TLF+Y+ +
Sbjct: 244 ------VDTRRSALYQDLKSGLAPSGIEYYLPMFFAKT-----ATLFDYLDK 284



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I +   H ++   E   ++ D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRDLSELVPEARIGIA--HGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +S+
Sbjct: 890 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVVPDRRSM 930


>gi|113461304|ref|YP_719373.1| transcription-repair coupling factor [Haemophilus somnus 129PT]
 gi|112823347|gb|ABI25436.1| transcription-repair coupling factor [Haemophilus somnus 129PT]
          Length = 1143

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 126/335 (37%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     LLG V     +  +A+++        VM P+   A  L             
Sbjct: 7   IPTQPNEHKLLGNVLQGADSLVIAEIVRRYDGLIFVMTPDVKSAVCL------------- 53

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CI 281
           E F++ +   QP  + P  +T      S +++I   R SA   L   N  I ++ ++  +
Sbjct: 54  EKFLTEFTQ-QPVTFFPDWETLPYDNFSPHQEIISARLSALFQLQHSNKGIFIAPITTVM 112

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   E     ++ +K GD +  +     L    Y+  +  +  G F V G  +++FP 
Sbjct: 113 QRVCPAEFLQHNVLLIKRGDRLNIERFRLQLENAGYRAVEQVLEHGEFAVRGALLDLFPM 172

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  ++ I +     + T R      + + + 
Sbjct: 173 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLEEIQRINLLPAQEFPTDR----KGIDFFRS 227

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +      +       TL
Sbjct: 228 QFRETFAEIRRDPEHIYQQ------------ISKGTLVSGIEYWQPLFFNQM-----ATL 270

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+YIP+++L    +    +PQ    Y+    R  +
Sbjct: 271 FDYIPDNTLFV--DFEQIMPQAERFYQDIEQRYES 303



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 69/179 (38%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   QV+D+   + +     +G
Sbjct: 751 ILTLTATPIPRTLNMAMSGIRDLSIIST-PPARRLSIKTFVRQVDDLIIREAVLREILRG 809

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++  E   ++ D    +F+VLV   
Sbjct: 810 GQVYYLHNDVASIENCAEKLTALVPEARVVVGHGQMRERELERVMSDFYHQRFNVLVCST 869

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K++  
Sbjct: 870 IIETGIDVPTANTIIIERADNFGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAMTK 924



 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 4/146 (2%)

Query: 81  QSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITF 140
                 +    +  ++       +A+ ++      LL         + ++     ++   
Sbjct: 533 VGGSDENAPLHKLGNDSWAKARHKAIEKIRDVAAELLDVYAQREVKKGFAFQYDKEEFKQ 592

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPA 196
           F     +  + DQ  AI  ++  +   +   +L+ G  G GKT      A +     +  
Sbjct: 593 FAATFPFEETPDQKMAINAVISDMCQEKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQV 652

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAV 222
            V+ P  +LA Q Y  FK+ F +  V
Sbjct: 653 AVLVPTTLLAQQHYENFKDRFANLPV 678


>gi|269102431|ref|ZP_06155128.1| transcription-repair coupling factor [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162329|gb|EEZ40825.1| transcription-repair coupling factor [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 1153

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 60/325 (18%), Positives = 129/325 (39%), Gaps = 39/325 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           ++G+    ++A++      P + + P+   A +L  E  + F H  V  F  + +    +
Sbjct: 25  LSGAALALSIAELAANHNGPILAVVPDSQTAVRLQPEI-SQFTHTDVTIFPDW-ETLPYD 82

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D        I++++ R+    T    + +  ++V   + +  +   E   Q  +
Sbjct: 83  NFSPHQDI-------ISDRLARLYQLPT----QESGVLLVPISTLLQRLTPREYLHQHAL 131

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD +  ++L   L    Y+  D  I  G +   G  ++++P    +  +R+  F +
Sbjct: 132 IVKKGDRLSLEKLRLQLEASGYRHVDQVIEHGEYASRGSLLDLYPM-GSNHPYRIDFFDD 190

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +++ I EF P   +    +E I +     +    PT + A++  +   + R         
Sbjct: 191 EVDSIREFDPENQRSTGEIEHINLLPAHEF----PTDDLAVESFRVRWRER--------- 237

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFVD 474
             EA+R  + I    + +        IE +          +   +LF+Y+P+ + L+ + 
Sbjct: 238 -FEARREPESI---YQQVSKKTWPAGIEYWQPLFF-----DHTESLFDYLPQQTLLVTLG 288

Query: 475 ESHVTIPQI--SGMYRGDFHRKATL 497
           E    + Q      YR D  R   L
Sbjct: 289 ELEPAVDQFLADADYRYDQRRVDPL 313



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 15/182 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     +  V + I     +
Sbjct: 758 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVREKDDAI--VREAILREINR 815

Query: 582 GLRILLT---VLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T     ED+++ + E  I   + H +++  E   I+ D    +F+VLV
Sbjct: 816 GGQVYFLHNEVDTIEKTVEDISKLVPEARIT--FAHGQMRERELERIMSDFYHQRFNVLV 873

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K +
Sbjct: 874 CTTIIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKRM 929

Query: 698 QL 699
             
Sbjct: 930 TK 931


>gi|320010356|gb|ADW05206.1| transcription-repair coupling factor [Streptomyces flavogriseus
           ATCC 33331]
          Length = 1176

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 88/562 (15%), Positives = 170/562 (30%), Gaps = 87/562 (15%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+++ +K      +  + L    + + F +A +     R  + +      A  L +  +
Sbjct: 14  PALSEAVKAASDGHRAHVDLVGPPAARPFAVAALAREAGRTVLAVTATGREAEDLAAALR 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
              P + V  F S+ +    E   PR+DT   + +     + R+ H            +V
Sbjct: 74  TLLPPDTVAEFPSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPRPDDPETGPVKVV 128

Query: 275 VSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           V+ V  +      G+G +E  +     L  G + +  E++ +L    Y R ++   RG F
Sbjct: 129 VAPVRSVLQPQVKGLGDLEPVA-----LSSGRTADLGEVVDALAAAAYARVELVEKRGEF 183

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTP 388
            V G  +++FP   E+   RV  +G+D+EEI  F     + +      +        +  
Sbjct: 184 AVRGGILDVFPP-TEEHPLRVEFWGDDVEEIRYFKIADQRSLEVAAHGLWAPPCRELLLT 242

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
                 A       L     EL +                 L  +    + + +E+ +  
Sbjct: 243 EDVRTRA-----AALAEAHPELGE----------------LLGKIAEGIAVEGMESLAPV 281

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYGFRLP 505
           L           L + +P+ S+  V +          +    +            G   P
Sbjct: 282 LVDEMEL-----LLDVLPKGSMALVCDPERVRTRAADLVATSQEFLQASWAATAGGGEAP 336

Query: 506 ---------SCMDNRPLRFEEWNCLRPTTIVVSATP--GSWELEQCQGIIVEQIIRPTGL 554
                       D R    E         +  S +P     EL        +      G+
Sbjct: 337 IDVGAASLWGIADVRERARELG------MMWWSTSPFAADEEL--------DGDTLKLGM 382

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
             P       R        +      +G R +     +  A    E L    I  R +  
Sbjct: 383 HAPEA----YRGDTARALADTKGWLAEGWRTVYVTEGQGPASRTVEVLGGEGIAAR-LDP 437

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++  L    +            V    +  G   P   L  + + D  G   +   L + 
Sbjct: 438 DLADLAPSLVH-----------VSCGAIDHGFVDPALKLAVLTETDLTGQRTASKDLGRM 486

Query: 675 IGRAARNVNSKVILYADTITKS 696
             R  ++++   +   D I   
Sbjct: 487 PARRRKSIDPLTLQAGDFIVHE 508



 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 70/202 (34%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD-EINLAAQQGL 583
            + +SATP    LE     I E     + +  PP E     T V    + +I  A ++ L
Sbjct: 777 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEEKQIGAAVRREL 832

Query: 584 ----RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
               ++          +     L E     R    H ++   +  +++ D    +FDVLV
Sbjct: 833 LREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMGESQLEQVVVDFWEKRFDVLV 892

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R  +     +     K  
Sbjct: 893 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRDRGYSYFLYPPEKP- 947

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 948 ---LTETAHERLATIAQHTEMG 966


>gi|145589112|ref|YP_001155709.1| transcription-repair coupling factor [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047518|gb|ABP34145.1| transcription-repair coupling factor [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 1180

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 76/453 (16%), Positives = 153/453 (33%), Gaps = 63/453 (13%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRP---AIVMAPNKILAAQLYSEFKNFFPHNA 221
            + ++     G+ GS     +A+     +      +V       A +L  E   F P   
Sbjct: 15  RAGQRF-TFSGLVGSADAALLAQTALRYRNEFSVMVVFCAQAQEAQRLADEIPAFAPQLK 73

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-C 280
           V     + +    + + P  D   E            R +    LL  +  IV+  V+  
Sbjct: 74  VRLLPDW-EILPYDHFSPHQDLVSE------------RLATLYELLNGSCDIVLVPVTTA 120

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           +  +G  +  S      + GD + +  L   L +  Y      +  G + + G  I++FP
Sbjct: 121 LQRLGPPQFLSGHTFFFRQGDKLNESALRLQLQQAGYDPVSAVLRPGEYSIRGGLIDLFP 180

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
               ++ +R+ +FG++IE+I  F P T + +  V+ +++     +        +      
Sbjct: 181 M-GSNLPYRLDLFGDEIEQIRAFDPDTQRSLYPVKEVRLLPGHEFPFNDEARTS------ 233

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              + R  E+ +                  +          IE+Y          E   T
Sbjct: 234 --FRSRWREVFEGD---------PTRCSIYKDANLGIPSAGIESYLPLFF-----EEQST 277

Query: 461 LFEYIPEDS-LLFVDESHVTIPQISGMYRGDFHRKATLAEYGF---RLPSCMDNRPLRFE 516
           LF+Y P     +++         I G ++    R     ++      LP    +  L  +
Sbjct: 278 LFDYFPRSGDPVWLVSIGNVEESIRGFWKDTLSRFE-FLKHDLDRPILPP--KDLFLDVD 334

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           ++          +A P +  L + +     Q +    + D  +  R A    + +     
Sbjct: 335 DF--------FTTAKPYARLLLENESAAANQFLP---VPDIAIHRRDA----DPISRLRA 379

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           + AQQ LR+L+   +    E + + L E N   
Sbjct: 380 VVAQQKLRVLICSDSAGRKESIRQLLDESNSVA 412



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 69/182 (37%), Gaps = 15/182 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L      + E  I    P   +     +R     V  + + +    ++
Sbjct: 774 ILTLTATPIPRTLGMAMEGLRELSIIATAPQKRLAIKTFVRREGDGV--IREAVLREIKR 831

Query: 582 GLRILLT---VLT-KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T +     L E + E  I V   H ++   E   ++R+    + ++L+
Sbjct: 832 GGQVYFLHNEVETIQNRKHALQELIPEARISVA--HGQMHERELESVMREFVTQRTNILL 889

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +++
Sbjct: 890 CTTIIETGIDVPTANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVPDPEAL 945

Query: 698 QL 699
             
Sbjct: 946 SK 947


>gi|119945864|ref|YP_943544.1| transcription-repair coupling factor [Psychromonas ingrahamii 37]
 gi|119864468|gb|ABM03945.1| fused transcription-repair coupling factor and superfamily II
           helicase [Psychromonas ingrahamii 37]
          Length = 1163

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 115/309 (37%), Gaps = 33/309 (10%)

Query: 166 SREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
            ++  +L+ G + GS +   +++  +    P I++  +   A +L  E + F   N    
Sbjct: 13  KKKSDRLIFGNLLGSSQALAISECAKQQASPLILIVDDTPTALKLRQELEFFVEDNLELI 72

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
               ++    + + P  D        I+ +I+ +     +    +N  ++V   + +  I
Sbjct: 73  TFPDWETLPYDNFSPHQDI-------ISNRIETL----YKLPNLKNAILIVPISTLLLRI 121

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
                  Q  + +K    +E + L + L +  Y   +  +  G F   G  ++I+P    
Sbjct: 122 APPSYLKQHTLIIKNKQKIELQALRADLQEAGYYAVEQVMEHGEFCARGSLLDIYPM-GS 180

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           D  +R+  F ++++ I  F   + + ++ +  IK+     + T +     A+K  K +  
Sbjct: 181 DTPYRIDFFDDEVDSIRPFDSESQRSLKAISEIKLLPAHEFATDKD----AIKRFKVQFT 236

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            +       G     +++ Q                 IE Y              +LF+Y
Sbjct: 237 HKFTSPLSTGNDSVFEQISQH-----------NLPAGIEYYLPLFF-----ADTASLFDY 280

Query: 465 IPEDSLLFV 473
            P ++ L +
Sbjct: 281 FPSNARLAI 289



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 68/180 (37%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+    + + + + D I     +G 
Sbjct: 762 ILTLTATPIPRTLNMSMNGMRDLSIIATPPAKRLAVKTFVVQKKDQIISDAITREIMRGG 821

Query: 584 RILLT---VLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T   A  D+ + + +  + V   H ++   +  +I+ D    + +VLV  
Sbjct: 822 QVYFLHNNVATIEKAAHDIQQLIPQAKVAVA--HGQMNEHQLEKIMADFYHQRQNVLVCS 879

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K +  
Sbjct: 880 TIIETGIDIPSANTIIINRADHLGLAQ----LHQLRGRVGRSHHQAYAYLLTPKPKLMTK 935


>gi|41407085|ref|NP_959921.1| hypothetical protein MAP0987 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395436|gb|AAS03304.1| Mfd [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 1221

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 96/252 (38%), Gaps = 18/252 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             QL+    +      L+G   +     +A  +  +  P +V+      A  L +E +  
Sbjct: 26  FQQLIDTAAASPADLSLVGPASTR--LFVASALARLG-PLLVVTATGREADDLTAELRGV 82

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
               AV  F S+ +    E   P  DT   + +     + R+ H     L      +VV+
Sbjct: 83  VGD-AVAVFPSW-ETLPHERLSPGVDTVGARLTV----LRRLAHPDDARL-GPPLQVVVT 135

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           +V  +    + +      V L +G  +E + +++ LV+  Y R D+   RG F V G  +
Sbjct: 136 AVRSLLQPMTPQLGLVEPVTLSVGQEIEFEHVIARLVELAYSRVDMVGRRGEFAVRGGIL 195

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN--VETIKIYANSHYVTPRPTLNT 394
           ++FP   E    RV  +G+++ E+  F     + I    V+T+        +        
Sbjct: 196 DVFPPTAE-HPVRVEFWGDEVSEMRMFSVADQRSIPEIAVDTVISVPCRELLLTEDVRAR 254

Query: 395 AMKYIKEELKMR 406
           A      EL  +
Sbjct: 255 A-----AELAAQ 261



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 66/204 (32%), Gaps = 21/204 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E     T V   +D      L  + 
Sbjct: 796 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGPHDDKQVAAALRREL 851

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM----HSEVKTLERIEIIRDLRLGKFDV 635
            +  +           +     + E     R +    H ++        ++     ++D+
Sbjct: 852 LRDGQAFYVHNRVSSIDRAAARVRELVPEARVVVVVAHGQMPEERLERTVQGFWNREYDI 911

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  GLDI     + +  AD  G  +    L Q  GR  R+       +      
Sbjct: 912 LVCTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPPHA 967

Query: 696 SIQLAIDETTRRREKQLEHNKKHN 719
                + ET   R   +  N +  
Sbjct: 968 P----LTETAYDRLATIAQNNELG 987


>gi|88192202|pdb|2B2N|A Chain A, Structure Of Transcription-Repair Coupling Factor
 gi|88192203|pdb|2B2N|B Chain B, Structure Of Transcription-Repair Coupling Factor
          Length = 344

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283


>gi|241668341|ref|ZP_04755919.1| transcription-repair coupling factor [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876874|ref|ZP_05249584.1| transcription-repair coupling factor [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842895|gb|EET21309.1| transcription-repair coupling factor [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 1139

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/329 (15%), Positives = 120/329 (36%), Gaps = 34/329 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  ++    GS  +    + ++  +   +++A +   A ++Y E K     + +E F   
Sbjct: 9   KDTIVSNAYGSSFSILFNEYLKQNREFNLIVAEDSQQAHRVYDELKYLNKDSKIEVF--- 65

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
              Y P   +   D +      I+ + + +          +N  ++ S  + +  +   +
Sbjct: 66  ---YFPNLEILPYDRFSAAIDIISRRQEILHKLTQN---PKNTLVITSISNTLRKLPPAK 119

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
              +    LKIGDS++  +    L +  Y   +    +G F + G  I+IFP     VA+
Sbjct: 120 FIKEHSFILKIGDSLDITKQKVLLTEAGYTLVNNVFEKGEFSIRGSIIDIFPV-GSKVAF 178

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+ +F ++++ I E    T +  + +++I I  +   +      + A++ +K     +  
Sbjct: 179 RIDLFDDEVDTIKELDTETQRSGKEIKSINIMPSHEMIYNSQNTSLALEKLKILCGEQSQ 238

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
                                   ++       IE Y              +LF+Y+P+ 
Sbjct: 239 NST-----------------IATYIKNNEYFSGIEFYLPLFYPEL-----VSLFDYLPKS 276

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATL 497
           + + + ++      I        +R   L
Sbjct: 277 ANIHLIDN--ISNSIEAFSEEVKYRYNEL 303



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 17/189 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +  I    P   +     ++     +  + + ++    +
Sbjct: 747 ILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDNNI--IREAVSRETIR 804

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +I          ++  E L E      I +   H ++   E  +I+ D +  K+ +L+
Sbjct: 805 GGQIFYLYNKVDTIQKKKEILQELFPRLRIAIA--HGQMSEKEIQKIMFDFKHNKYHILL 862

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I DA+  G  +    L Q  GR  R+ +            SI
Sbjct: 863 CTTIIETGIDIPNANTLIIEDANNLGLAQ----LHQLRGRVGRSHHQAYAYMLVPSEGSI 918

Query: 698 QLAIDETTR 706
               D T R
Sbjct: 919 TK--DATKR 925


>gi|325922308|ref|ZP_08184088.1| transcription-repair coupling factor Mfd [Xanthomonas gardneri ATCC
           19865]
 gi|325547213|gb|EGD18287.1| transcription-repair coupling factor Mfd [Xanthomonas gardneri ATCC
           19865]
          Length = 1156

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 104/292 (35%), Gaps = 34/292 (11%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           + +   +++A+  EA   P +V+A +   A Q+ S+       +A            P  
Sbjct: 27  SPTALAWSIARAAEAHAGPLLVIARDNQSAHQIESDLHALLGEHA----------TLPVV 76

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMIV 295
             P  +T    + S + +I   R +A   L      +V+  V  +   +  +        
Sbjct: 77  PFPDWETLPYDQFSPHPEIISQRLAALHRLPTLTKGVVIVPVQTLMQQLAPLSYIVGGSF 136

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            LK+G  ++       L    Y+     +  G F V G  +++FP   E    RV +   
Sbjct: 137 DLKVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPM-GEATPLRVELLDE 195

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ I  F P + + +  V+ +K+           ++   +      L+ R         
Sbjct: 196 DIDSIRAFDPESQRSLDKVDAVKLLPGREVPMDDASIERVLAC----LRERFD------- 244

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                 ++ R +   + L++  +   +E Y              TLF+Y+ +
Sbjct: 245 ------VDTRRSALYQDLKSGLAPSGVEYYLPMFF-----SKTATLFDYLDK 285



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I +   H ++   E   ++ D +  +F+VL+   ++  G+DIP   
Sbjct: 834 RMQRDLSELVPEARIGIA--HGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNAN 891

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +SI
Sbjct: 892 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVVPDRRSI 932


>gi|209542295|ref|YP_002274524.1| transcription-repair coupling factor [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209529972|gb|ACI49909.1| transcription-repair coupling factor [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 1156

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 90/491 (18%), Positives = 170/491 (34%), Gaps = 59/491 (12%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
            + G       F +A+       P + +A +    A++        P+  +  F      
Sbjct: 13  TIWGAPDGFDAFLVARRAREHDGPVLHVARDDAGMARIGELLSFVAPNAEILRF------ 66

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI--VVSSVSCI-YGIGSVE 288
                  P  D       S N  I   R +    LLE       V+++V  +   +    
Sbjct: 67  -------PSWDCLPYDRVSPNPAIVAERVATLTRLLEPATAPRIVLTTVGGLVQRVAPRA 119

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           ++    + L  GDS++Q  L+  LV   Y R D  +  G F   G   +IFPS  E    
Sbjct: 120 AFRGQSLTLAAGDSLDQALLIDLLVAAGYNRTDTVMEPGEFATRGGIFDIFPS-GEAEPV 178

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+ +FG+++E I  F P T +    ++   +   + +   + +++            R  
Sbjct: 179 RLDLFGDEVENIRRFDPATQRSSDRLDRFVMRPVADFTLDQASISRF----------RTG 228

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
             +  G    +  L + ++              +E++          E   TL +Y+P  
Sbjct: 229 WRDLFGPAAASDPLYEHVS-------DGRRHAGLEHWLPLFH-----EHLETLVDYLPGV 276

Query: 469 SLLFVDESHVTI-PQISGMYRGDFHRKATLAEYGF---RLPSCMDNRPLRFEEWNCLRPT 524
           S++   +    +  ++  +      R+  + E       LP       L  + W+ +   
Sbjct: 277 SIILAHQVEDVLAARLEMIADHFEARRQPVREGEVPYRALPP--HLMYLDRKGWDGILSG 334

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD-EINLAAQQGL 583
             V+  +P +          V+   RP G++   V    AR  V  + D ++   A+ G 
Sbjct: 335 HPVMLFSPFA---RPDNAGGVDAGGRP-GILFASVAGGGARENVFAMLDTQVRQWAETGR 390

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R  ++  T+   E +   L E  +RV       +T +     +DL  G   +L     L 
Sbjct: 391 RAYVSAWTRGSRERIATLLREHGMRV-------ETFDGWARAQDLPPGTVGLL--TLGLE 441

Query: 644 EGLDIPECGLV 654
            G        V
Sbjct: 442 RGFIADNLAFV 452



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 96/278 (34%), Gaps = 41/278 (14%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
              + +SATP    L+     + E  +    PT  +     I    + V  + + I     
Sbjct: 754  HVLTLSATPLPRTLQLALTGVREMSLIATPPTDRLAVRTFIMPFDSVV--IREAIQRERF 811

Query: 581  QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
            +G +I   V      + +   L +     R +  H  +   E   ++ +   GK+D+L+ 
Sbjct: 812  RGGQIFCVVPRIEDLDRMAARLQDIVPDARLVQAHGRLTPTELERVMTEFSDGKYDILLS 871

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             N++  GLD+P    + I  AD  G  +    L Q  GR  R             T  + 
Sbjct: 872  TNIVESGLDMPAVNTLIIHRADMFGLGQ----LYQLRGRVGRGKQRGYAYLTWPQTHVLS 927

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
             A +   +R E                   +M+ +D +       ++        +L   
Sbjct: 928  AAAE---KRLE-------------------VMQTLDTLGAGFTLASHDLDLRGAGNLLGD 965

Query: 759  KGKAHLK----SLRKQMHL-AADNLNFEEA---ARIRD 788
            +   H++     L +QM   A   L  E+    A+ RD
Sbjct: 966  EQSGHIREVGIELYQQMLEDAVAELRVEKGRRKAQDRD 1003


>gi|262171148|ref|ZP_06038826.1| transcription-repair coupling factor [Vibrio mimicus MB-451]
 gi|261892224|gb|EEY38210.1| transcription-repair coupling factor [Vibrio mimicus MB-451]
          Length = 1156

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 112/311 (36%), Gaps = 37/311 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +A++  A     ++  P+   A +L  E    F    V  F  + +    +
Sbjct: 24  LHGSSLALAIAELANAHTNHTLLAVPDPQTALKLLHEI-EQFSQGEVALFPDW-ETLPYD 81

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D        I+++I R+     +         +V   + +      +   Q  +
Sbjct: 82  NFSPHQDI-------ISDRISRL----YQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTL 130

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  F +
Sbjct: 131 IVKRGDLFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDFFDD 189

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F P   + I  ++ I++     +    PT   A++  +   + R         
Sbjct: 190 EIDTIRTFDPENQRSIAEMDEIRLLPAHEF----PTTAAAIEEFRNRWRQR--------- 236

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD- 474
             EA+R  + I      +        IE +       +      TLF+Y+P +S L V  
Sbjct: 237 -FEARREPESI---YSQVSKGTWPAGIEYWQPLFFDHSE-----TLFDYLPSNSQLLVVG 287

Query: 475 ESHVTIPQISG 485
           E   +I Q   
Sbjct: 288 ELEKSIDQFLA 298



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 72/181 (39%), Gaps = 13/181 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q ED  + + +     +G
Sbjct: 756 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSEDSVIREAVLREIMRG 814

Query: 583 LRILLT---VLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++      V T    A DL + + E  + V   H +++  E  +++ D    +F++LV 
Sbjct: 815 GQVYFLHNQVETIDKVAADLEKLVPEARVTVA--HGQMRERELEKVMNDFYHQRFNLLVC 872

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I 
Sbjct: 873 TTIIETGIDVPTANTIIMDRADSLGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAIT 928

Query: 699 L 699
            
Sbjct: 929 K 929


>gi|17232707|ref|NP_489255.1| transcriptional-repair coupling factor [Nostoc sp. PCC 7120]
 gi|17134354|dbj|BAB76914.1| transcriptional-repair coupling factor [Nostoc sp. PCC 7120]
          Length = 1185

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 84/523 (16%), Positives = 174/523 (33%), Gaps = 84/523 (16%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +R++   L G++   K    + + +       V+      A + Y++ +         Y 
Sbjct: 24  NRQQDLRLNGISRLPKGLVTSALAQNSGNNLFVVCATLEEAGRAYAQLEAMGWQTVHFYP 83

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL------------------ 267
            S    Y+P  + P T+    +   + + +   + +                        
Sbjct: 84  TSEASPYEP--FDPETEMTWGQMQVLADLVKSQQSTVNSQQSTVNSQQSTVNGQQSTVNG 141

Query: 268 ERNDCIVVSSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
           ++N   VV++V  +   +   +++    + L  G   +       +    Y+R  +    
Sbjct: 142 QQNKIAVVATVGALQPHLPPPDAFIPFSLTLTRGLEFDLDTFSEKITILGYERVPLVETE 201

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK-IRNVETIKIYANSHY 385
           G +   GD +++FP   E +  R+  FG++IE+I EF P T +  +  +  I +   S  
Sbjct: 202 GQWSRRGDIVDVFPVSSE-LPVRLEWFGDEIEQIREFDPNTQRSALDKITQIVLTPTSFA 260

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
                        I   L+             E Q L   ++ D  + E +     +   
Sbjct: 261 PI-----------ITTALE----------NSAEYQVLSSELSSDSTLTEGSRRFLGLAF- 298

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505
                     E P ++ +Y+ E++L+ +DE        S  +  +   + +L      L 
Sbjct: 299 ----------ERPASVLDYLSENTLIAIDEPEQC-HAHSDRWVENAEEQWSLGTGEADLG 347

Query: 506 SCMD---NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           S      +R       +  R  T+ +S      EL +    +         L    V + 
Sbjct: 348 SVQLPKIHRSFEECLADVTRFKTLYLS------ELSEENSGV--------NLASRSVPVT 393

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
               Q   + D +     +   I L       +  L   L E +   +++ +        
Sbjct: 394 P--HQFAKLADTLRQERDRNFSIWLISAQPSRSVSL---LQEHDCPAQFIPNPRD----Y 444

Query: 623 EIIRDLRLGKFDVLVGINLLR--EGLDIPECGLVAILDADKEG 663
           + I  L++    V +  + L   EG  +P   LV I D +  G
Sbjct: 445 QAIDKLQINHTPVALKYSGLAELEGFILPTYRLVVITDREFYG 487



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 94/254 (37%), Gaps = 23/254 (9%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
             + +SATP    L      I E  +  T    PP   R  +T +     E V   I    
Sbjct: 786  VLTLSATPIPRTLYMSLSGIREMSLITT----PPPTRRPIKTHLSPRNPESVRSAIRQEL 841

Query: 580  QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
             +G ++   V      E++T  L E     R+   H ++   E    +     G  D+LV
Sbjct: 842  DRGGQVFYVVPRVDGIEEITANLREMVPGARFAIAHGQMDESELESTMLTFSNGDADILV 901

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  GLDIP    + I DA + G L     L   +GRA    ++ +           
Sbjct: 902  CTTIIESGLDIPRVNTILIEDAHRFG-LSQLYQLRGRVGRAGIQAHAWLFY-------PK 953

Query: 698  QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV-IDPILLEDAATTNISIDAQQLSLS 756
            Q  + +  R+R + ++   +        +  + ++ I  +     A  +  ++A    L 
Sbjct: 954  QRELSDAARQRLRAIQEFTQLG---SGYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLY 1010

Query: 757  KKKGKAHLKSLRKQ 770
             +  +  ++ +R Q
Sbjct: 1011 MEMLEESIREIRGQ 1024



 Score = 38.5 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI-NLLREGL 646
           T+LT++    L E      + V  ++      ER  I + L  G+ D++VG   LL + +
Sbjct: 694 TILTQQHYHTLKERFSPYPVNVGLLNRFRTAEERRNIQKRLATGELDIVVGTHQLLGKSV 753

Query: 647 DIPECGLVAILDADKEG 663
              + GL+ I +  + G
Sbjct: 754 SFKDLGLLVIDEEQRFG 770


>gi|26247258|ref|NP_753298.1| transcription-repair coupling factor [Escherichia coli CFT073]
 gi|26107659|gb|AAN79858.1|AE016759_132 Transcription-repair coupling factor [Escherichia coli CFT073]
          Length = 951

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 33  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 91

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 92  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 139

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 140 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 198

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 199 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQWRD 254

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 255 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 297

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 298 PANTLLV 304



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 15/179 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 772 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 829

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 830 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 887

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+    + +  D  +KS
Sbjct: 888 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSXPPGICMATDAASKS 942


>gi|300703955|ref|YP_003745557.1| transcription-repair ATP-dependent coupling factor, helicase
           [Ralstonia solanacearum CFBP2957]
 gi|299071618|emb|CBJ42942.1| transcription-repair ATP-dependent coupling factor, helicase
           [Ralstonia solanacearum CFBP2957]
          Length = 1147

 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 85/528 (16%), Positives = 171/528 (32%), Gaps = 79/528 (14%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAP-NKILAAQLYSEFKNFFPHN 220
           +   ++  +  G+ GS     +A+ +E  +   P + +   N + A +L  E + F P  
Sbjct: 16  VKPGQRF-VFSGLQGSADALLLARYLEQHRATAPMLAVVCANAVDAQRLADELRWFAPQA 74

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVS 279
            V+              +P  +T      S ++ +   R +    L       ++V + +
Sbjct: 75  RVKL-------------LPDWETLPYDNFSPHQDLISERLATLHDLQGGACDLLLVPAST 121

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
            +  I      +      K G+ +++  L +      Y+     +  G + V G  I++F
Sbjct: 122 ALQRIAPPSFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLF 181

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P     + +R+ +FG++IE I  F P T + +  V  +++     +              
Sbjct: 182 PM-GSPMPYRLDLFGDEIETIRAFDPDTQRSLYPVNEVRLLPGREFPMDEAARTAF---- 236

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
                         GR  E    +       + +        IE Y          E   
Sbjct: 237 -------------RGRWREVFEGDPTRAPIYKDIGNGVPSAGIEYYLPLFF-----EETA 278

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519
           TLF+Y+P  + L +      I      +  D  ++     +         +RPL      
Sbjct: 279 TLFDYLPATAHLALVGD---IEAAVRRFWADTTQRYNFMRHDR-------DRPLLAPPAL 328

Query: 520 CLRPTTIVVSATP-GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
            L      V+A P     L    G     +  P   V+   E        + + +     
Sbjct: 329 YLDEEAFFVAAKPHARLVLRAEAGDAPLSLPLPNVAVNRRAE--------DPLVNLEAFL 380

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +   R+++   +    E L + L         +H E      +    DL  G+   ++G
Sbjct: 381 MRGDCRVMICAESAGRRETLAQMLAASG-----LHPEG-----VADCADLMGGEARFVLG 430

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +  L +G          IL  ++  F+       Q + R+ R    + 
Sbjct: 431 VAPLYQGF---------ILGDERIAFITETELYAQAVRRSGRRKQEQA 469



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 78/198 (39%), Gaps = 20/198 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + I    ++
Sbjct: 756 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDSV--LREAILRELKR 813

Query: 582 GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E+    L   + E  + V   H ++   E   ++RD    + ++L+
Sbjct: 814 GGQVYFLHNEVETIENKRAKLEALVPEARVAVA--HGQMHERELERVMRDFVAQRANILL 871

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +    
Sbjct: 872 CTTIIETGIDVPTANTILIHRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLVHDA 924

Query: 698 QLAIDETTRRRE--KQLE 713
           +    +  RR E  +Q+E
Sbjct: 925 EGLTKQAQRRLEAIQQME 942


>gi|331657178|ref|ZP_08358140.1| transcription-repair-coupling factor (TRCF) (ATP-dependent helicase
           mfd) [Escherichia coli TA206]
 gi|331055426|gb|EGI27435.1| transcription-repair-coupling factor (TRCF) (ATP-dependent helicase
           mfd) [Escherichia coli TA206]
          Length = 391

 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTIQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283


>gi|329941162|ref|ZP_08290441.1| transcriptional-repair coupling factor [Streptomyces
           griseoaurantiacus M045]
 gi|329299693|gb|EGG43592.1| transcriptional-repair coupling factor [Streptomyces
           griseoaurantiacus M045]
          Length = 1176

 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 85/546 (15%), Positives = 167/546 (30%), Gaps = 77/546 (14%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
              ++ + L    + + F +A +     RP + +      A  L +  +   P   V  +
Sbjct: 25  DGNRMHVDLVGPPAARPFAVAALARGTGRPVLAVTATGREAEDLAAALRTLLPPQGVVEY 84

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI---- 281
            S+ +    E   PR+DT   + +     + R+ H            +VV+ V  +    
Sbjct: 85  PSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPRADDPETGPVSVVVAPVRSVLQPQ 139

Query: 282 -YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
             G+G +   +     L+ G++ +   ++++L    Y R ++   RG F V G  +++FP
Sbjct: 140 VKGLGDLVPVA-----LRSGETADLGAVVAALSAAAYARVELVEKRGEFAVRGGILDVFP 194

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTPRPTLNTAMKYI 399
              E+   RV  +G+D+EEI  F     + +   E  +        +        A    
Sbjct: 195 P-TEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELLLTEEVRERA---- 249

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
              L     EL +                 L  +    + + +E+ +  L          
Sbjct: 250 -AALAEDHPELGE----------------LLGKIAEGIAVEGMESLAPVLVDDMEL---- 288

Query: 460 TLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYGFRLP---SCMDNRPL 513
            L + +PE ++  V +          +    +            G   P         PL
Sbjct: 289 -LLDVLPEGAMAVVCDPERVRTRSADLVATSQEFLQASWAATAGGGEAPIDVDAASLWPL 347

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
                       +  S +P + +LE     +   +  P           S R        
Sbjct: 348 ADVRDRARELDMMWWSVSPFAADLELDADTLKLGMHAP----------ESYRGDTAKALA 397

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +      +G R +     +  A    E L    +  R                D+ LG+ 
Sbjct: 398 DTKGWLAEGWRTVFVTEGQGPASRTVEVLGGEGVAARL---------------DVDLGEI 442

Query: 634 ---DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
               V V    +  G   P   L  + + D  G   +     +   R  + ++   +   
Sbjct: 443 SPSVVHVACGCIDHGFVDPALKLAVLTETDLSGQKAAGREGARMPARRRKTIDPLTLETG 502

Query: 691 DTITKS 696
           D I   
Sbjct: 503 DYIVHE 508



 Score = 38.5 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 68/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD-EINLAAQQGL 583
            + +SATP    LE     I E     + +  PP E     T V    + +I  A ++ L
Sbjct: 777 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEEKQIGAAVRREL 832

Query: 584 ----RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
               ++          +     L E     R    H ++      +++ D    +FDVLV
Sbjct: 833 LREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKRFDVLV 892

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R        +     K  
Sbjct: 893 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRERGYAYFLYPPEKP- 947

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 948 ---LTETAHERLATIAQHTEMG 966


>gi|167646581|ref|YP_001684244.1| transcription-repair coupling factor [Caulobacter sp. K31]
 gi|167349011|gb|ABZ71746.1| transcription-repair coupling factor [Caulobacter sp. K31]
          Length = 1155

 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 78/454 (17%), Positives = 146/454 (32%), Gaps = 50/454 (11%)

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
           K I        L G         MA +  A       +A +   A+      K F P   
Sbjct: 6   KQIAKAAGGLTLAGAPEGFDALVMADIARARGGLTAFVARDTARASAFIDALKFFAPEIE 65

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-----RNDCIVVS 276
              F             P  D         +  +   R +    L E     +   +V +
Sbjct: 66  AVLF-------------PSWDCLPYDRIGPSAGVAATRMATLHRLAEGLGKDKAAILVTA 112

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + + +  +       +     K+G+ V+  +L        Y R      RG F + G  I
Sbjct: 113 APALLQRVPEKTVLLRASYGAKVGNVVDVADLERYFAINGYVRASTVSERGEFAIRGGVI 172

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +++P   E+   R+ +FG+ +E I  F P T +  + +  I++   S  +  +  ++   
Sbjct: 173 DVYPPAAEE-PVRLDLFGDTLESIRAFDPETQRSTKQLREIQLLPVSEALLDKEGISRFR 231

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
                     + E    G                  +   G    +E++      R    
Sbjct: 232 SG-------YIREFGAPGD-----------DALYATVSEGGRRAGLEHWLPLFYERM--- 270

Query: 457 PPPTLFEYIPEDSLLFVDE--SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
              TLF+Y+P+ +L+ +D   +     +++ +      R +   +  +R P   D   L 
Sbjct: 271 --ATLFDYLPDGALVGIDHQVTESRDERLAMIADAYDARASADRKSAYR-PLKPDALYLT 327

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
             EW+           TP      Q QG+ V  +    G        + +    +   D 
Sbjct: 328 AAEWDQAVEDRTHRKFTPF-----QPQGLDVVDMGAKLGRTFAAERAQDSVNLFQATADH 382

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
               A QG R+L    ++  +E L   L +  I+
Sbjct: 383 ATTLAGQGKRVLFASWSEGSSERLGMMLADHGIK 416



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 99/264 (37%), Gaps = 36/264 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     I E  I  T  VD    +R+  +  +   + + +     +
Sbjct: 755 HMLTLTATPIPRTLQMALSGIREMSIIATPPVDRLA-VRTYISPFDPVTLREALLREKYR 813

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V   +  E++ ++L  +   V+Y+  H ++   +  +++     G++DVL+  
Sbjct: 814 GGQAYYVVPRIKDLEEIEKFLRTQVPEVKYVVGHGQMAPTQLEDVMTAFYEGQYDVLLAT 873

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+                  
Sbjct: 874 TIVESGLDIPSANTLIVHRADMFGLAQ----LYQIRGRVGRSKARAYAYLTTPN------ 923

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
                    EKQ+  + +  +       K+++ +D +       ++        +L   +
Sbjct: 924 ---------EKQITLSAEKRL-------KVLQSLDSLGAGFQLASHDLDQRGGGNLLGDE 967

Query: 760 GKAHLK----SLRKQMHL-AADNL 778
              H+K     L +QM   A   L
Sbjct: 968 QSGHIKEIGVELYQQMLEDAVAEL 991



 Score = 41.6 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            Y  + DQ +AIA +L+ + S +   +L+ G  G GKT      A V+    +   ++ P
Sbjct: 603 PYEETDDQLSAIADVLEDLGSGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQVAIVCP 662

Query: 202 NKILAAQLYSEFKNFF 217
             +LA Q Y  FK+ F
Sbjct: 663 TTLLARQHYKTFKDRF 678


>gi|293608212|ref|ZP_06690515.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828785|gb|EFF87147.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 1153

 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 75/500 (15%), Positives = 166/500 (33%), Gaps = 71/500 (14%)

Query: 155 AAIAQL-LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
             I+QL L+ + + EK   +  + GS       ++        +V+A N    AQL SE 
Sbjct: 4   QEISQLNLQQLKAGEKR-WVGSLLGSSAALLFKEIAVQHSSLLVVVARNNQHVAQLESEL 62

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           + +     +      ++    +   P  D   E+ + ++              + +   +
Sbjct: 63  EFYGIKPTI---FPDWEILPYDRLSPHQDIVSERLAILSN-------------MPQKGVL 106

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           ++S+ +    +            +++G   + ++    LV+  Y   D     G F V G
Sbjct: 107 LISASTLAQRVAPYSWVLGEHFDIRVGQKFDLEQQKLRLVQAGYHLVDTVYDHGEFAVRG 166

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++IF +  +D   R+ +F ++I+ +  F P T +    +++  +     +        
Sbjct: 167 SIMDIF-ASGQDAPIRIDLFDDEIDTLKFFDPETQRTTTTLKSFTVLPAKEFPLKEARSI 225

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                     + R  EL       +            + +    +   IE Y      + 
Sbjct: 226 ---------FRDRYSELFPTANPKK--------NPIYQDVLDGIASPGIEFYLPLFFDKT 268

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPS----- 506
             +   TL  Y P++ ++  +    T   ++  ++  F R            LP      
Sbjct: 269 YMQSQSTLTTYFPKNCIVITNNDIDT--DLTSFWKEVFRRYEDRRHNADQPILPPDELFI 326

Query: 507 CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
             +N      ++  +     +VSA       E+  G +  ++ +P  L   P + +    
Sbjct: 327 APNNLLSALNQFPRM-----LVSAEAV----EEKVGALNLKVEQPPKLPVDPKKDKPFAV 377

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            V+   DE N        +LL   +    E L + L             +  +  ++   
Sbjct: 378 -VKKYIDEANHP------VLLVAESAGRRESLRDGLRAS----------LGDIPSVDSFE 420

Query: 627 DLRLGKFDVLVGINLLREGL 646
             +  +F + +    L  GL
Sbjct: 421 QFQKSQFAIAITNAPLDRGL 440



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 97/259 (37%), Gaps = 52/259 (20%)

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
             +  L+ VDE H    +     +        L      +P     R L    ++ +R  
Sbjct: 725 FKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIP-----RTLNMA-FSGMRDL 778

Query: 525 TIVVSATP-------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN- 576
           +I+  ATP        ++  E  +  I E I+R                QV  +++E++ 
Sbjct: 779 SII--ATPPARRLAVKTFVQEHTEASIKEAILRELLR----------GGQVYFLHNEVDT 826

Query: 577 -LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A + +R+L+                E  + V   H +++  E  ++++     +++V
Sbjct: 827 IERAAENIRVLV---------------PEARVAVA--HGQMRERELEQVMQQFYHKEYNV 869

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +  
Sbjct: 870 LVCSTIIETGIDVPNANTILIERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVP 922

Query: 696 SIQLAIDETTRRR-EKQLE 713
           SI+    +  +R    Q  
Sbjct: 923 SIKHLKGDAEKRLDAIQRA 941



 Score = 38.9 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 81/233 (34%), Gaps = 33/233 (14%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q G ++ + V T    ++  E   +   +  +R+  +         
Sbjct: 638 GKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTH 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            + I DL  GK D++VG + LL+E +   + GL+ + +  + G    +        +A R
Sbjct: 698 TKNIEDLAEGKVDIVVGTHKLLQENVQFKDLGLMVVDEEHRFGVRDKERI------KALR 751

Query: 681 NVNSKVILYADTITKSIQLA---------IDETTRRREKQLEHNKKHNINPQSVKEKIME 731
                + L A  I +++ +A         I     RR       ++H       +  I E
Sbjct: 752 ADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEH------TEASIKE 805

Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR-----KQMHLAADNLN 779
            I   LL       +  +   +  + +  +  +   R      QM      L 
Sbjct: 806 AILRELLRGGQVYFLHNEVDTIERAAENIRVLVPEARVAVAHGQMRE--RELE 856


>gi|266621880|ref|ZP_06114815.1| excinuclease ABC subunit B [Clostridium hathewayi DSM 13479]
 gi|288866412|gb|EFC98710.1| excinuclease ABC subunit B [Clostridium hathewayi DSM 13479]
          Length = 104

 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 56/90 (62%), Positives = 71/90 (78%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI  L+KG     + + LLGVTGSGKTFTMA VI+ +Q+P +++A
Sbjct: 3   FKLHSEYQPTGDQPQAIEALVKGFKEGSQFETLLGVTGSGKTFTMANVIQQLQKPTLIIA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
            NK LAAQLYSEFK FFP NAVEYFVSYY+
Sbjct: 63  HNKTLAAQLYSEFKEFFPENAVEYFVSYYE 92


>gi|253989203|ref|YP_003040559.1| transcription-repair coupling factor [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253780653|emb|CAQ83815.1| transcription-repair coupling factor (trcf) [Photorhabdus
           asymbiotica]
          Length = 1148

 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 124/323 (38%), Gaps = 38/323 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TG+      A+++E  Q P +++  +   A +L+ E   F                 P 
Sbjct: 22  LTGAACAVECAEIVERHQGPVVLITKDMQNALRLHDEIHQFTDC--------------PI 67

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
             +   +T      S +++I   R S    L       +++   + +  +   E      
Sbjct: 68  DLLSDWETLPYDSFSPHQEIISNRLSTLYRLPTMTKGILILPINTLMQRVCPHEYLHGHA 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +  G  + + +L + L +  Y+  +  +  G F   G  +++FP   E   +R+  F 
Sbjct: 128 LVMHKGQKLSRNKLRAELEQAGYRSVEQVLEHGEFATRGALLDLFPMGSE-HPYRIDFFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ +  F   + + +  V+ I +     + T + T    ++  + + + R        
Sbjct: 187 DEIDSLRIFDVDSQRTLTEVKQINLLPAHEFPTDKET----IELFRSQWRER-------- 234

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
              E +R  + I    + +        IE +          +P P+LF+Y+P+++L+   
Sbjct: 235 --FEVRRDGEHI---YQQVSKGTLPAGIEYWQPLFFK----QPLPSLFDYLPDNTLIISQ 285

Query: 475 ESHVTIPQI-SGMYRGDFHRKAT 496
           + + +  +    + +   +RK  
Sbjct: 286 DVNSSAERFWQDVQQRFINRKTD 308



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L      + +  I    P   +     +R   + V  V + +     +
Sbjct: 750 ILTLTATPIPRTLNMAMSSMRDLSIISTPPARRLAVKTFVREYDSLV--VREAMLREILR 807

Query: 582 GLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E     L + + E  I +   H +++  +   ++ D    +F+VL+
Sbjct: 808 GGQVYYLYNDVENIEKAKLRLEKLVPEARIAIG--HGQMRERDLERVMTDFHHQRFNVLI 865

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 866 CTTIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAM 921


>gi|149912292|ref|ZP_01900862.1| putative transcription-repair coupling factor [Moritella sp. PE36]
 gi|149804626|gb|EDM64687.1| putative transcription-repair coupling factor [Moritella sp. PE36]
          Length = 1106

 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 64/340 (18%), Positives = 126/340 (37%), Gaps = 45/340 (13%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           +  ++  ++  G + GS   FT+A++    + P + +  +   A +L  E ++F   +  
Sbjct: 11  LPKKQGDKIAYGNLVGSSLAFTLAELCAQTKFPILAVVADTPSALKLEQEVRHFLADDK- 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                      P    P  +T      S ++ I   R  A     +    +++ SV+ + 
Sbjct: 70  -----------PLITFPDWETLPYDNFSPHQDIISQRIHALHRFQQTTSGLIIVSVNTLM 118

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             I  V   +Q  + +K GD ++   +   L    Y   D  +  G F   G  ++++P 
Sbjct: 119 QRIAPVSFLAQHSLIVKTGDKIDMHAMRKRLETSGYHAVDQVLEHGEFSARGSILDLYPM 178

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
                 +R+  F +++EEI  F   T +    ++ I +     +    PT   A++    
Sbjct: 179 GSSS-PFRIDFFDDEVEEIRGFNTETQRSEEILDEINLLPAHEF----PTDAKAIEL--- 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             + +   L    R  EA+ + Q+++              IE Y              TL
Sbjct: 231 -FRQQFRALFTPSR--EAESIYQQVSK-------GFLPTGIEYYHPLFL-----TETATL 275

Query: 462 FEYIPED-SLLFVDESHVT-------IPQISGMYRGDFHR 493
           F+Y+P+  ++  V E H         + Q     R D  R
Sbjct: 276 FDYLPKQLTIAQVGELHQASEVFFQDVEQRYEDRRHDIQR 315



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 68/180 (37%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        +++   Q ++  V + I     +G
Sbjct: 757 ILTLTATPIPRTLNMAMNGMRDLSIIATPPAKRLA-VKTFVRQYDENIVKEAIMREIMRG 815

Query: 583 LRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            ++      +  + K   E L E + E  I     H ++   E   ++ D    +F+VLV
Sbjct: 816 GQVYFLHNNVDSIDK-TVEALAELIPEARIVAA--HGQMAERELESVMADFYHQRFNVLV 872

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + +  AD  G  +    L Q  GR  R+ +           K I
Sbjct: 873 CTTIIETGIDIPSANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKRI 928


>gi|319783816|ref|YP_004143292.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169704|gb|ADV13242.1| transcription-repair coupling factor [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 1165

 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 86/533 (16%), Positives = 179/533 (33%), Gaps = 64/533 (12%)

Query: 163 GIHSREKVQLLL-GVTGS--GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           G+      Q ++ GV           A +  A  +P + +A +      +        P 
Sbjct: 8   GLPKGRAGQFIVDGVADGYEAFALVQAALEIAPDKPVLFVARDGQRLPAIIEALSFAAPG 67

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV--SS 277
             V    ++ D    +   P +D   ++  +          +A  +L ++    V+  ++
Sbjct: 68  LPVLELPAW-DCLPYDRVSPGSDAAAKRLDA---------LTAMIALAKKPHRAVILTTA 117

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            + +  I   E         + G+ ++   L+S L    ++R       G F V G  ++
Sbjct: 118 NALLQRIPPSELVEAQTFHARPGNQIDMNALVSRLETSGFERVPTVRGIGEFAVRGGILD 177

Query: 338 IF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +F P   E  A R+  FG+ +E I  F   T +     +++ + A S       T++   
Sbjct: 178 LFAPGWTE--ALRLDFFGDTLESIRVFDAATQRTTGQRKSMALQAMSEVALTPETISRF- 234

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
                    R   +E  G         QR       +        +E++  +       E
Sbjct: 235 ---------RRSYIEAFGAP-------QRDDGLYAAVSEGRRFAGMEHWLPFFY-----E 273

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              T+F+Y+P+  ++F   +H  + +   +    +  +   A+    L   +  +P+  +
Sbjct: 274 RLETVFDYLPDTPVIFDHLAHEALAERHTLILDHYEARRKQADG--ALKDAVPYKPVAPD 331

Query: 517 EWNCLRPTTIVVSATP---GSWELEQCQGIIVEQIIRPTGLV-DPPVEIR--SARTQVED 570
               L P  ++ S  P     +       I  +++           VE R        + 
Sbjct: 332 LLY-LSPENLITSLGPREAIDFTPFDAPDIGAKKVYHAGSRHGRSFVEERADPNANVFDV 390

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           V   I        R+++   T+   + L + L E ++        +K +  +     L  
Sbjct: 391 VVKHIADERAARRRVVIAGWTEGSLDRLGQILAEHHL------GNLKQVVTLAEAEKLEP 444

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           G+  + V    L  G +     LV + + D  G       LI+   R  R  +
Sbjct: 445 GQAALAVLP--LESGFETE--KLVVVAEQDILG-----DRLIRRSKRKKRPSD 488



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 768 HVLTLSATPIPRTLQLALTGVRELSLIATPPVDRMA-VRTFISPFDPLVIRETLLRERYR 826

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G      V       ++ ++L E    ++V   H ++   E  +I+     G++DVL+  
Sbjct: 827 GGHSFYVVPRISDLSEIHDFLKESVPELKVAVAHGQMPPGELDDIMNAFYDGQYDVLLST 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + I  AD  G  +    L Q  GR  R   SKV  YA     + + 
Sbjct: 887 TIVESGLDIPTANTLIIHRADMFGLSQ----LYQLRGRVGR---SKVRAYALFTLPANRK 939

Query: 700 AIDETTRRREK 710
             D   RR + 
Sbjct: 940 LTDTAERRLKV 950


>gi|289208374|ref|YP_003460440.1| transcription-repair coupling factor [Thioalkalivibrio sp. K90mix]
 gi|288944005|gb|ADC71704.1| transcription-repair coupling factor [Thioalkalivibrio sp. K90mix]
          Length = 1157

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 85/482 (17%), Positives = 156/482 (32%), Gaps = 75/482 (15%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           Q P +V+  +   A +   E          E+F +  D   P   +P  +T      S +
Sbjct: 42  QWPLLVVVESNEAADRWQEE---------WEFFGAGLDL--PVMRLPDWETLPFDVFSPH 90

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMIVQLKIGDSVEQKELLSS 311
           E I   R      L      I++  VS +        + +   + L+ G  +++ +L   
Sbjct: 91  EDIISERLRTLYHLPSLERGIILIPVSTLMQRLPPRDWLTTQGLSLRSGQRLDRMQLRER 150

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           L +  Y   +  I RG F   G+ +++FP   E    R+    ++I+ +  F P T +  
Sbjct: 151 LTEAGYSAVNQVISRGEFAARGEILDLFPMGAE-QPVRIEFLDDEIDSLRHFDPETQRST 209

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
             VE ++I  +  +     ++       +E       +   +       R          
Sbjct: 210 EKVERVEILPSHEFPLNEGSIRAFRTRYRE-------QFSGDPSRHPIYR---------- 252

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
            +        IE Y          E   ++F+Y P      V +            R   
Sbjct: 253 DISEGLVPPGIEAYLPLFF-----EGMDSVFDYAP---QARVVQVGNIADAAQEYAREIA 304

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV----EQ 547
            R   L             RPL       L P  + +  +  +  L    GI +     Q
Sbjct: 305 DRFEQL--------GHQVERPL-------LPPERLYLDESALNEALRARAGIALGGEPPQ 349

Query: 548 IIRPTG------LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
            +            DP  E+     + +   + +     +  R+LLT  +    E L   
Sbjct: 350 PLPADRGRTVPFTCDPLPELGMEHGK-DAPAERLKHFVGEQERVLLTAESAGRREALLTL 408

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L E++I     H  V              G+  + V +  L EG  +P+ G+V + ++  
Sbjct: 409 LREQDIP----HHAVDDW------EAFLEGEPGLSVTVGALSEGFRLPD-GIVLVPESAI 457

Query: 662 EG 663
            G
Sbjct: 458 LG 459



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 80/202 (39%), Gaps = 17/202 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  +  T      + I++   +  D  + +      ++G
Sbjct: 759 MLTMTATPIPRTLNMALSGLRDLSVITT-PPRERLAIKTFVNEWNDAIIQEACLREIRRG 817

Query: 583 LRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++      V T  RMAE +   L    I +   H +++  E  +++ D    ++++LV 
Sbjct: 818 GQVYFVHNEVNTIERMAEQIRALLPGARIGIA--HGQMRERELEQVMLDFYHRRYNILVC 875

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + +  ADK G  +    + Q  GR  R+ +           K++ 
Sbjct: 876 STIIETGIDVPTANTIVMNRADKLGLAQ----MHQLRGRVGRSHHRAYAYLVTPPEKAMS 931

Query: 699 LAIDETTRRREKQLEHNKKHNI 720
                  R+R + +   +   +
Sbjct: 932 A----DARKRLEAIASLEDLGV 949


>gi|170717838|ref|YP_001784898.1| transcription-repair coupling factor [Haemophilus somnus 2336]
 gi|168825967|gb|ACA31338.1| transcription-repair coupling factor [Haemophilus somnus 2336]
          Length = 1144

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 123/335 (36%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     LLG V     +  +A+++        VM P+   A  L      F      
Sbjct: 8   IPTQPNEHKLLGNVLQGADSLVIAEIVRRYDGLIFVMTPDVKSAVCLEKILTEF------ 61

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CI 281
                     QP  + P  +T      S +++I   R SA   L   N  I ++ ++  +
Sbjct: 62  --------TQQPVTFFPDWETLPYDNFSPHQEIISARLSALFQLQHSNKGIFIAPITTVM 113

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   E     ++ +K GD +  +     L    Y+  +  +  G F V G  +++FP 
Sbjct: 114 QRVCPAEFLQHNVLLIKRGDRLNIERFRLQLENAGYRAVEQVLEHGEFAVRGALLDLFPM 173

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  ++ I +     + T R      +++ + 
Sbjct: 174 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLEEIQRINLLPAQEFPTDR----KGIEFFRS 228

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +      +       TL
Sbjct: 229 QFRETFAEIRRDPEHIYQQ------------ISKGTLVSGIEYWQPLFFNQM-----ATL 271

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+YIPE++L    +    +PQ    Y+    R  +
Sbjct: 272 FDYIPENTLFV--DFEQIVPQAERFYQDIEQRYES 304



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 69/179 (38%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   QV+D+   + +     +G
Sbjct: 752 ILTLTATPIPRTLNMAMSGIRDLSIIST-PPARRLSIKTFVRQVDDLIIREAVLREILRG 810

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++  E   ++ D    +F+VLV   
Sbjct: 811 GQVYYLHNDVASIENCAEKLTALVPEARVVVGHGQMRERELERVMSDFYHQRFNVLVCST 870

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K++  
Sbjct: 871 IIETGIDVPTANTIIIERADNFGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAMTK 925



 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 4/146 (2%)

Query: 81  QSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITF 140
                 +    +  ++       +A+ ++      LL         + ++     ++   
Sbjct: 534 VGGSDENAPLHKLGNDSWAKARHKAIEKIRDVAAELLDVYAQREVKKGFAFQYDKEEFKQ 593

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPA 196
           F     +  + DQ  AI  ++  +   +   +L+ G  G GKT      A +     +  
Sbjct: 594 FAATFPFEETPDQKMAINAVISDMCQKKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQV 653

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAV 222
            V+ P  +LA Q Y  FK+ F +  V
Sbjct: 654 AVLVPTTLLAQQHYENFKDRFANLPV 679


>gi|297579403|ref|ZP_06941331.1| transcription-repair coupling factor [Vibrio cholerae RC385]
 gi|297536997|gb|EFH75830.1| transcription-repair coupling factor [Vibrio cholerae RC385]
          Length = 1155

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 110/298 (36%), Gaps = 36/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+     +A++  A     ++  P+   A +L  E    F H+ V  F  + +    +
Sbjct: 24  LHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEV-EQFSHSEVALFPDW-ETLPYD 81

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D        I+++I R+     +         +V   + +      +   Q  +
Sbjct: 82  NFSPHQDI-------ISDRISRL----YQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTL 130

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  F +
Sbjct: 131 IVKRGDHFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDFFDD 189

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F P   + I  ++ I++     +    PT   A++  +   + R         
Sbjct: 190 EIDTIRTFDPDNQRSIAEMDEIRLLPAHEF----PTTAAAIEEFRNRWRQR--------- 236

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
             EA+R  + +      +        IE +          E   TLF+Y+P +S L V
Sbjct: 237 -FEARREPESV---YSQVSKGTWPAGIEYWQPLFF-----EHSETLFDYLPANSQLLV 285



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 93/269 (34%), Gaps = 27/269 (10%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
             + ++ATP    L      + +  I  T        I++   Q +D  + + +     +G
Sbjct: 756  ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSDDSVIREAVLREIMRG 814

Query: 583  LRILLT---VLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++      V T    A DL   + E  I V   H +++  E  +++ D    +F++LV 
Sbjct: 815  GQVYFLHNQVETIDKVAADLENLVPEARITVA--HGQMRERELEKVMNDFYHQRFNLLVC 872

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I 
Sbjct: 873  TTIIETGIDVPTANTIIMDRADSLGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAIT 928

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
               D   R        +        +   +I    + +  E +           + + ++
Sbjct: 929  K--DAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQ 986

Query: 759  KGKAH-------LKSL-----RKQMHLAA 775
              +A        L  L       +M L A
Sbjct: 987  AVEALKSGKEPALDDLLREQTEVEMRLPA 1015



 Score = 37.8 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 76  GEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDN----PLLKNGKIWTPHRSWSI 131
                 S  S   ++  ++ +      V+A  +  +        LL           +  
Sbjct: 529 SSLNLISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKF 588

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAK 187
           +   +    F+    +  + DQ  AI  +L  +  ++   +L+ G  G GKT      A 
Sbjct: 589 HLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAF 648

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           V     +   V+ P  +LA Q +  F++ F +
Sbjct: 649 VATDNGKQVAVLVPTTLLAQQHFENFRDRFAN 680


>gi|229515266|ref|ZP_04404726.1| transcription-repair coupling factor [Vibrio cholerae TMA 21]
 gi|229347971|gb|EEO12930.1| transcription-repair coupling factor [Vibrio cholerae TMA 21]
          Length = 1157

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 110/298 (36%), Gaps = 36/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+     +A++  A     ++  P+   A +L  E    F H+ V  F  + +    +
Sbjct: 26  LHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEV-EQFSHSEVALFPDW-ETLPYD 83

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D        I+++I R+     +         +V   + +      +   Q  +
Sbjct: 84  NFSPHQDI-------ISDRISRL----YQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTL 132

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  F +
Sbjct: 133 IVKRGDHFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDFFDD 191

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F P   + I  ++ I++     +    PT   A++  +   + R         
Sbjct: 192 EIDTIRTFDPDNQRSIAEMDEIRLLPAHEF----PTTAAAIEEFRNRWRQR--------- 238

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
             EA+R  + +      +        IE +          E   TLF+Y+P +S L V
Sbjct: 239 -FEARREPESV---YSQVSKGTWPAGIEYWQPLFF-----EHSETLFDYLPANSQLLV 287



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 94/269 (34%), Gaps = 27/269 (10%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
             + ++ATP    L      + +  I  T        I++   Q ED  + + +     +G
Sbjct: 758  ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSEDSVIREAVLREIMRG 816

Query: 583  LRILLT---VLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++      V T    A DL + + E  I V   H +++  E  +++ D    +F++LV 
Sbjct: 817  GQVYFLHNQVETIDKVAADLEKLVPEARITVA--HGQMRERELEKVMNDFYHQRFNLLVC 874

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I 
Sbjct: 875  TTIIETGIDVPTANTIIMDRADSLGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAIT 930

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
               D   R        +        +   +I    + +  E +           + + ++
Sbjct: 931  K--DAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQ 988

Query: 759  KGKAH-------LKSL-----RKQMHLAA 775
              +A        L  L       +M L A
Sbjct: 989  AVEALKSGKEPALDDLLREQTEVEMRLPA 1017



 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A   G ++ + V T    ++  E+  +      IRV  +       E+
Sbjct: 640 GKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQ 699

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            +I++D+  GK D+LVG + LL   +   + GL+ + +  + G  + +        +A R
Sbjct: 700 KQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKV------KAMR 753

Query: 681 NVNSKVILYADTITKSIQLAID----------ETTRRREKQ-LEHNKKHNINPQSVKEKI 729
                + L A  I +++ +A+              RR   +      + ++  ++V  +I
Sbjct: 754 ADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREI 813

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
           M       L +   T   + A    L     +A +     QM      L 
Sbjct: 814 MRGGQVYFLHNQVETIDKVAADLEKLVP---EARITVAHGQMRE--RELE 858



 Score = 37.8 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 76  GEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDN----PLLKNGKIWTPHRSWSI 131
                 S  S   ++  ++ +      V+A  +  +        LL           +  
Sbjct: 531 SSLNLISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKF 590

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAK 187
           +   +    F+    +  + DQ  AI  +L  +  ++   +L+ G  G GKT      A 
Sbjct: 591 HLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAF 650

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           V     +   V+ P  +LA Q +  F++ F +
Sbjct: 651 VATDNGKQVAVLVPTTLLAQQHFENFRDRFAN 682


>gi|229520346|ref|ZP_04409772.1| transcription-repair coupling factor [Vibrio cholerae TM 11079-80]
 gi|229342712|gb|EEO07704.1| transcription-repair coupling factor [Vibrio cholerae TM 11079-80]
          Length = 1157

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 110/298 (36%), Gaps = 36/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+     +A++  A     ++  P+   A +L  E    F H+ V  F  + +    +
Sbjct: 26  LHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEV-EQFSHSEVALFPDW-ETLPYD 83

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D        I+++I R+     +         +V   + +      +   Q  +
Sbjct: 84  NFSPHQDI-------ISDRISRL----YQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTL 132

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  F +
Sbjct: 133 IVKRGDHFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDFFDD 191

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F P   + I  ++ I++     +    PT   A++  +   + R         
Sbjct: 192 EIDTIRTFDPDNQRSIAEMDEIRLLPAHEF----PTTAAAIEEFRNRWRQR--------- 238

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
             EA+R  + +      +        IE +          E   TLF+Y+P +S L V
Sbjct: 239 -FEARREPESV---YSQVSKGTWPAGIEYWQPLFF-----EHSETLFDYLPANSQLLV 287



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 94/269 (34%), Gaps = 27/269 (10%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
             + ++ATP    L      + +  I  T        I++   Q ED  + + +     +G
Sbjct: 758  ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSEDSVIREAVLREIMRG 816

Query: 583  LRILLT---VLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++      V T    A DL + + E  I V   H +++  E  +++ D    +F++LV 
Sbjct: 817  GQVYFLHNQVETIDKVAADLEKLVPEARITVA--HGQMRERELEKVMNDFYHQRFNLLVC 874

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I 
Sbjct: 875  TTIIETGIDVPTANTIIMDRADSLGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAIT 930

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
               D   R        +        +   +I    + +  E +           + + ++
Sbjct: 931  K--DAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQ 988

Query: 759  KGKAH-------LKSL-----RKQMHLAA 775
              +A        L  L       +M L A
Sbjct: 989  AVEALKSGKEPALDDLLREQTEVEMRLPA 1017



 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A   G ++ + V T    ++  E+  +      IRV  +       E+
Sbjct: 640 GKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQ 699

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            +I++D+  GK D+LVG + LL   +   + GL+ + +  + G  + +        +A R
Sbjct: 700 KQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKV------KAMR 753

Query: 681 NVNSKVILYADTITKSIQLAID----------ETTRRREKQ-LEHNKKHNINPQSVKEKI 729
                + L A  I +++ +A+              RR   +      + ++  ++V  +I
Sbjct: 754 ADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREI 813

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
           M       L +   T   + A    L     +A +     QM      L 
Sbjct: 814 MRGGQVYFLHNQVETIDKVAADLEKLVP---EARITVAHGQMRE--RELE 858



 Score = 37.8 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 76  GEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDN----PLLKNGKIWTPHRSWSI 131
                 S  S   ++  ++ +      V+A  +  +        LL           +  
Sbjct: 531 SSLNLISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKF 590

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAK 187
           +   +    F+    +  + DQ  AI  +L  +  ++   +L+ G  G GKT      A 
Sbjct: 591 HLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAF 650

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           V     +   V+ P  +LA Q +  F++ F +
Sbjct: 651 VATDNGKQVAVLVPTTLLAQQHFENFRDRFAN 682


>gi|183179491|ref|ZP_02957702.1| transcription-repair coupling factor [Vibrio cholerae MZO-3]
 gi|183012902|gb|EDT88202.1| transcription-repair coupling factor [Vibrio cholerae MZO-3]
          Length = 1155

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 110/298 (36%), Gaps = 36/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+     +A++  A     ++  P+   A +L  E    F H+ V  F  + +    +
Sbjct: 24  LHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEV-EQFSHSEVALFPDW-ETLPYD 81

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D        I+++I R+     +         +V   + +      +   Q  +
Sbjct: 82  NFSPHQDI-------ISDRISRL----YQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTL 130

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  F +
Sbjct: 131 IVKRGDHFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDFFDD 189

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F P   + I  ++ I++     +    PT   A++  +   + R         
Sbjct: 190 EIDTIRTFDPDNQRSIAEMDEIRLLPAHEF----PTTAAAIEEFRNRWRQR--------- 236

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
             EA+R  + +      +        IE +          E   TLF+Y+P +S L V
Sbjct: 237 -FEARREPESV---YSQVSKGTWPAGIEYWQPLFF-----EHSETLFDYLPANSQLLV 285



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 94/269 (34%), Gaps = 27/269 (10%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
             + ++ATP    L      + +  I  T        I++   Q ED  + + +     +G
Sbjct: 756  ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSEDSVIREAVLREIMRG 814

Query: 583  LRILLT---VLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++      V T    A DL + + E  I V   H +++  E  +++ D    +F++LV 
Sbjct: 815  GQVYFLHNQVETIDKVAADLEKLVPEARITVA--HGQMRERELEKVMNDFYHQRFNLLVC 872

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I 
Sbjct: 873  TTIIETGIDVPTANTIIMDRADSLGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAIT 928

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
               D   R        +        +   +I    + +  E +           + + ++
Sbjct: 929  K--DAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQ 986

Query: 759  KGKAH-------LKSL-----RKQMHLAA 775
              +A        L  L       +M L A
Sbjct: 987  AVEALKSGKEPALDDLLREQTEVEMRLPA 1015



 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A   G ++ + V T    ++  E+  +      IRV  +       E+
Sbjct: 638 GKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQ 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            +I++D+  GK D+LVG + LL   +   + GL+ + +  + G  + +        +A R
Sbjct: 698 KQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKV------KAMR 751

Query: 681 NVNSKVILYADTITKSIQLAID----------ETTRRREKQ-LEHNKKHNINPQSVKEKI 729
                + L A  I +++ +A+              RR   +      + ++  ++V  +I
Sbjct: 752 ADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREI 811

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
           M       L +   T   + A    L     +A +     QM      L 
Sbjct: 812 MRGGQVYFLHNQVETIDKVAADLEKLVP---EARITVAHGQMRE--RELE 856



 Score = 37.8 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 76  GEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDN----PLLKNGKIWTPHRSWSI 131
                 S  S   ++  ++ +      V+A  +  +        LL           +  
Sbjct: 529 SSLNLISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKF 588

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAK 187
           +   +    F+    +  + DQ  AI  +L  +  ++   +L+ G  G GKT      A 
Sbjct: 589 HLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAF 648

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           V     +   V+ P  +LA Q +  F++ F +
Sbjct: 649 VATDNGKQVAVLVPTTLLAQQHFENFRDRFAN 680


>gi|315104557|gb|EFT76533.1| transcription-repair coupling factor [Propionibacterium acnes
           HL050PA2]
          Length = 1208

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 82/469 (17%), Positives = 154/469 (32%), Gaps = 68/469 (14%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++      A +  +  K +   ++V Y+ S+ +    E   PRTDT   +   +   
Sbjct: 70  PVLLVTSTFREAEESVATLKTWLGADSVCYYPSW-ETLPHERLSPRTDTVGRRMEVLR-- 126

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
               R   T         +VV+ V  +             V+L +G+  +  EL + LV 
Sbjct: 127 ----RLCGTEG---EVPQVVVAPVRSLLQPQVAGLGRIAPVRLAVGEQHDLTELTTELVN 179

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R D+   RG F V G  +++FP  LE    R+  FG++IEE++ F     +     
Sbjct: 180 AAYSRVDMVERRGEFAVRGGIVDVFPPVLE-HPVRIDFFGDEIEEMTSFAVADQRSTDET 238

Query: 375 ETIKIY-ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
               I       +      + A        K  L +  +   +LE              +
Sbjct: 239 HQELICAPCRELILTDEVRSRA--------KALLTDHPELADMLER-------------I 277

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
               + + +E     L           L + +PE +++ + +  +   + + + R     
Sbjct: 278 GNGQAVEGMEALMPALVDEMEL-----LVDVLPEHAMVVLSDPEMVRSRAADLVRTSEEF 332

Query: 494 KA--------------TLAEYGFR-LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
                            LA  G+R L     +   R   W  +   ++    +P +  L 
Sbjct: 333 LGAGWAAAAGGGQAPIDLAASGYRNLAQVRSHCLERGMAWWSMSSFSLD---SPATDVLV 389

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
                   Q + P       V +      VE    ++      G  +LL    + MA+ +
Sbjct: 390 DDDITSAPQTVNPQ-----LVAVEPWHGDVEAAVKDLTTRLDDGWTVLLCAEGEGMAKRM 444

Query: 599 TEYLYERNIRVRYMHS-------EVKTLERIEIIRDLRLGKFDVLVGIN 640
           +E L E N+  R +             + R+            +LV   
Sbjct: 445 SELLGEHNVAARLVDDVDPDATEPCVQVIRLHQRHGFAADSVKLLVAST 493



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 25/205 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--------RTQVEDVYDEIN 576
            + +SATP    LE     I E     T    PP E              QV      I 
Sbjct: 801 VLAMSATPIPRTLEMAVTGIREMSTIAT----PPEERHPVLTFAGPYDEGQV---VAAIR 853

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
               +  ++       +  E     L E     R +  H ++   +  +I+ D    + D
Sbjct: 854 RELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQLEQIMVDFWERRAD 913

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV   ++  G+DI     + I  AD  G  +    L Q  GR  R+       +     
Sbjct: 914 VLVCTTIVESGIDISTANTLLIDRADLMGLSQ----LHQLRGRVGRSRERGYAYFLYPAD 969

Query: 695 KSIQLAIDETTRRREKQLEHNKKHN 719
           K     + +T   R   +  +    
Sbjct: 970 KP----LSQTAHDRLATMAAHTDLG 990


>gi|295838353|ref|ZP_06825286.1| transcription-repair coupling factor [Streptomyces sp. SPB74]
 gi|295826975|gb|EDY42784.2| transcription-repair coupling factor [Streptomyces sp. SPB74]
          Length = 1108

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 114/287 (39%), Gaps = 19/287 (6%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+A+ +K      + +  +    + + F +A +    +R  + +      A  L +  +
Sbjct: 17  PALAEAVKAAGDGHRTRADVVGPPAARPFVVAALAREARRTVLAVTATGREAEDLAAALR 76

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
              P   V  F S+ +    E   PR+DT   + +     + R+ H            +V
Sbjct: 77  TLIPAEGVVEFPSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPEADDPEAGPVSVV 131

Query: 275 VSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           V+ +  +      G+G +E  +     L+ G S + +E++ +L    Y R ++   RG F
Sbjct: 132 VAPIRSVLQPQVKGLGDLEPVA-----LRQGRSADLQEIVQALAAAAYARVELVEKRGEF 186

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTP 388
            V G  +++FP   E+   RV  +G+++EEI  F     + +   E  +        +  
Sbjct: 187 AVRGGILDVFPP-TEEHPLRVEFWGDEVEEIRYFKVADQRSLEIAEHGLWAPPCRELLLT 245

Query: 389 RPTLNTAMKYIKE--ELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
                 A    +E  EL   L ++ +   +   + L   +  D+E+L
Sbjct: 246 DEVRRRAAVLAEEHPELHELLGKIAEGIAVEGMESLAPVLVDDMELL 292


>gi|237745816|ref|ZP_04576296.1| transcription-repair coupling factor [Oxalobacter formigenes
           HOxBLS]
 gi|229377167|gb|EEO27258.1| transcription-repair coupling factor [Oxalobacter formigenes
           HOxBLS]
          Length = 1150

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 82/507 (16%), Positives = 163/507 (32%), Gaps = 69/507 (13%)

Query: 176 VTGSGKTFTMAKVIEAMQRP---AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           + GS     +AK    ++      + +  N   A +L  E         + +F S  D  
Sbjct: 21  LHGSADALVLAKAAHELKSRQQMLVAVVANASDARRLLEE---------IPWFDSEGDEP 71

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESYS 291
                +P  +T      S ++ +   R +    +       ++V + + +  I      +
Sbjct: 72  LRCHLLPDWETLPYDSFSPHQDLVSQRLATLYEVHNGRCDVLLVPASTALLRIAPPSFLA 131

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
                 K G+++++ +L + L    Y      +  G + V G  I++FP     + +R+ 
Sbjct: 132 AHTFFFKKGETLDEAKLKTQLTIAGYNHVSQVMSPGEYSVRGGLIDLFPM-GSKLPYRLD 190

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +FG+ IE I  F   T + +  V  I++     +    P+        +   + R  E+ 
Sbjct: 191 LFGDTIETIRTFDADTQRSLYPVNEIRMLPGREFPMDEPS--------RAYFRSRWREVF 242

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
           +    L               + +  +   IE Y          E   TLF+Y+PE+++ 
Sbjct: 243 EGDPTLSV---------IYRDIASGIASAGIEYYLPLFF-----EETATLFQYLPENAIF 288

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +             +     R A L             RPL   E   L      V A 
Sbjct: 289 AL--IGNVSEAFQRFWADTRSRYAFL--------KSDRERPLLPPEKLFLSSEDFFVLAQ 338

Query: 532 P-GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ-GLRILLTV 589
           P G W +             P   ++            +D    +    ++ G R+L+  
Sbjct: 339 PFGRWVITSDDAPSELSAPIPDVTINRRA---------DDPLSNLRTYIERAGKRVLICA 389

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            +    E + +   E + +V                 D      DV+  +  L++G  + 
Sbjct: 390 ESPGRRETMQQLFNEYDFKVAPCTG----------FADFITHSEDVMFCVAPLQKGFALG 439

Query: 650 EC--GLVAILDADKEGFLRSKTSLIQT 674
                L  I + +       ++   QT
Sbjct: 440 YVFGDLAFITETELYANSGRRSVRKQT 466



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 20/198 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +RS    V  + +      ++
Sbjct: 756 VLTLTATPIPRTLGMALDGLRSFSIIATAPQKRLAIKTFVRSENDSV--IREACLRELKR 813

Query: 582 GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E+    L   L E  I V   H ++   +  +++RD    ++++L+
Sbjct: 814 GGQVYFLHNEVETIENRRVMLENLLPEARIGVA--HGQMHERDLEKVMRDFVAHRYNILL 871

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +     YA  +   I
Sbjct: 872 CTTIIETGIDVPNANTMVMHRADKFGLAQ----LHQLRGRIGRSHHQ---AYAYLLVNDI 924

Query: 698 QLAIDETTRRRE--KQLE 713
           Q    +  RR E  +Q+E
Sbjct: 925 QTLSKQAQRRLEAIRQME 942


>gi|326803014|ref|YP_004320832.1| transcription-repair coupling factor [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650035|gb|AEA00218.1| transcription-repair coupling factor [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 1183

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 74/522 (14%), Positives = 188/522 (36%), Gaps = 62/522 (11%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ-RPAIVMAPNKILAAQLYSEFKNFF 217
           +L   + + +   L LG+  + K + +A++  +   +  +V+  N + A + Y + + F 
Sbjct: 17  KLENTLRTGQ-SVLYLGLQAASKAYMIAEIQSSNPDKKTVVLTNNLLQAERFYEDLQTFN 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIVV 275
           P   +  + S      PE+     D  I+   ++ +     R +    LL+ +    ++ 
Sbjct: 76  PEADLHLYSS------PES--VAEDLAIQSPEALGD-----RLATLDWLLDEDSSGILIS 122

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
                   +  V  +  ++  ++ G  +   +L + L+   Y+R +  +  G   V GD 
Sbjct: 123 PIFGLKRALTPVAEWKHLVKSIQRGQELAVGQLKADLLLLGYERVEAVLRPGEMSVRGDI 182

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +++FP        R+S+  +++E I+ F   + +   ++E + I      +     L   
Sbjct: 183 VDLFP-LTSSQPLRLSLAFDEVERITTFDVNSQKSQEDLEAVTILPAKDLLFSPDRLKAG 241

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +  +++  + +  +++ E    + Q + Q    +++      + +    +S+ L   +  
Sbjct: 242 VANLEKVAQEKAEKVQDEAIKKQVQAIFQD---EIQAWSAGETTERTHYFSQILYPDS-- 296

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP---------- 505
               +L +Y+ E   L +D+    I     + +          E G   P          
Sbjct: 297 ---CSLLDYVGEGQTLVLDDMTRLIELSQEIDQRAALYLQGKVEAGHLPPIDQIYLDSHD 353

Query: 506 -----------------SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE------QCQG 542
                               + R     ++     T    +      E E      +   
Sbjct: 354 QVMAYSGRKFYLAQWQKGYGNMRFDGLYQFQTRTVTPFYHNKEAIKLEFEAWLRMGRSLL 413

Query: 543 IIVEQIIRPTGLVDPP--VEIRSARTQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLT 599
           I +E+  +   L      ++ ++  TQ + +  E        L   +  V ++ +    +
Sbjct: 414 IFIEEEDKARDLEKDLKAMDFQAVLTQADQIIPEAINIIAGQLSGGIEFVDSQVVLLAQS 473

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +   +   R R   + +   ER++  ++L+ G + V V   +
Sbjct: 474 DLFDQAKRRRRKNTNNLSNAERLKSYQELKPGDYVVHVNHGI 515



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 69/181 (38%), Gaps = 7/181 (3%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + D I     +  
Sbjct: 776 VLTLTATPIPRTLNMSMMGVRDLSVIETPPANRFPVQTYVMEQNYGAIRDAIERELARNG 835

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  ++   ++ E   + R    H ++   +  E++ D   G  DVLV   +
Sbjct: 836 QVFYLFNNVQNIQEKANFIEELVPKARVAIAHGQMHANQLEEVLMDFLAGDDDVLVTTTI 895

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + + DAD+ G     ++L Q  GR  R+       +     K++  A 
Sbjct: 896 IETGIDMPNVNTLLVEDADRMGL----STLYQLRGRVGRSNRVAYAYFMYRPDKALNEAS 951

Query: 702 D 702
           +
Sbjct: 952 E 952



 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 70/209 (33%), Gaps = 33/209 (15%)

Query: 15  IQSISTRVDDLDYFSFEEKQLEVDKTMVADAMRRIRSEAGKHRKNAAKRMLIHQRENTAS 74
           +++I    +  DY S     +  D   +   + +I            K +    +    +
Sbjct: 521 VETIEVAGNHKDYLSI----VYADNASIHVPIDQI--------DLVQKYVSAEGKSPKLN 568

Query: 75  KGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNH 134
           K             ++T++   + +      L  L        + G  ++P         
Sbjct: 569 KMGGT-------EWQKTKQRVSKKIEDIADDLVDLYAERET--RKGYAFSPDN------- 612

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKT-FTMAKVIEAM 192
            +D   F+ +  Y  + DQ  +I ++   +   +   +LL+G  G GKT   M    +AM
Sbjct: 613 -EDQAAFEDEFPYPETDDQLRSIKEIKADMEKEKPMDRLLVGDVGFGKTEVAMRAAFKAM 671

Query: 193 --QRPAIVMAPNKILAAQLYSEFKNFFPH 219
              +    + P  +LA Q Y      F  
Sbjct: 672 LDGKQVAFLVPTTVLAQQHYETMLERFKD 700


>gi|295396690|ref|ZP_06806836.1| transcription-repair coupling factor [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294970436|gb|EFG46365.1| transcription-repair coupling factor [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 1202

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 134/438 (30%), Gaps = 51/438 (11%)

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
            F +A+       P + +      A +L     +     +V +F S+ +    E   PR+
Sbjct: 39  PFLIARASATA--PVVAVTSTGREAEELTEALADHLGPTSVVFFPSW-ETLPHERLSPRS 95

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           DT  ++ S     +  + H   R L      +       + G+G +E        LK+GD
Sbjct: 96  DTVGKRLSV----LRALSHPGERPLSVVVTTVRALLQPIVKGLGDLEPV-----TLKVGD 146

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
             +  EL   L    Y R D+   RG F V G  I+IFP   ED A RV  FG+++EEI 
Sbjct: 147 EHDLTELAEHLSHLAYSRVDMVSRRGEFAVRGGIIDIFPP-TEDSALRVEFFGDEVEEIR 205

Query: 362 EFYPLTGQKIR-----NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
            F     + I          +        +        A       L  ++         
Sbjct: 206 RFSVADQRSIEPEEGAETPHVWAPPCREVLLSAKVRERA-----AALVEQIPAAADM--- 257

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
                        L  +    +   +E+ +  L     G  P  L   +P  + + V   
Sbjct: 258 -------------LNKIADGVAVDGMESLAPVL---ADGMEP--LLARLPSTTRIVVLSP 299

Query: 477 HVTIPQ---ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
                +   +            T    G   P  +D  P  F      R     +S  P 
Sbjct: 300 ERVETRAADLVATTDEFLAAAWTATASGGEAP--IDLSPASFRTLEETRTAADQLSL-PW 356

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
                  +   + +       VD   E R     VE V  ++         + +    K 
Sbjct: 357 WEVGGFARDEELVEATENHVTVDAR-EPRGYAGDVEAVLTDVRDHVSHAWNVYVLTEGKG 415

Query: 594 MAEDLTEYLYERNIRVRY 611
               L E   E +I   +
Sbjct: 416 SGSRLVEVFSEADILAHF 433



 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 11/149 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     T    PP E     T V     + V   I    
Sbjct: 783 VLAMSATPIPRTLEMAVTGIREMSTLAT----PPEERHPVLTYVGKYEEKQVTAAIRREL 838

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++       +  + +   L E     R    H ++   +  ++I D    ++DVLV
Sbjct: 839 LREGQVFFIHNRVQDIDAVATRLAELVPEARIAVAHGKMSEQQLEKVIVDFWEKQYDVLV 898

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLR 666
              ++  G+DI     + +  AD+ G  +
Sbjct: 899 CTTIVETGIDIANANTLIVDRADRMGLSQ 927


>gi|121727094|ref|ZP_01680268.1| transcription-repair coupling factor [Vibrio cholerae V52]
 gi|121630472|gb|EAX62864.1| transcription-repair coupling factor [Vibrio cholerae V52]
          Length = 1155

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 110/298 (36%), Gaps = 36/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+     +A++  A     ++  P+   A +L  E    F H+ V  F  + +    +
Sbjct: 24  LHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEV-EQFSHSEVALFPDW-ETLPYD 81

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D        I+++I R+     +         +V   + +      +   Q  +
Sbjct: 82  NFSPHQDI-------ISDRISRL----YQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTL 130

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  F +
Sbjct: 131 IVKRGDHFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDFFDD 189

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F P   + I  ++ I++     +    PT   A++  +   + R         
Sbjct: 190 EIDTIRTFDPDNQRSIAEMDEIRLLPAHEF----PTTAAAIEEFRNRWRQR--------- 236

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
             EA+R  + +      +        IE +          E   TLF+Y+P +S L V
Sbjct: 237 -FEARREPESV---YSQVSKGTWPAGIEYWQPLFF-----EHSETLFDYLPANSQLLV 285



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 94/269 (34%), Gaps = 27/269 (10%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
             + ++ATP    L      + +  I  T        I++   Q ED  + + +     +G
Sbjct: 756  ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSEDSVIREAVLREIMRG 814

Query: 583  LRILLT---VLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++      V T    A DL + + E  I V   H +++  E  +++ D    +F++LV 
Sbjct: 815  GQVYFLHNQVETIDKVAADLEKLVPEARITVA--HGQMRERELEKVMNDFYHQRFNLLVC 872

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I 
Sbjct: 873  TTIIETGIDVPTANTIIMDRADSLGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAIT 928

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
               D   R        +        +   +I    + +  E +           + + ++
Sbjct: 929  K--DAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQ 986

Query: 759  KGKAH-------LKSL-----RKQMHLAA 775
              +A        L  L       +M L A
Sbjct: 987  AVEALKSGKEPALDDLLREQTEVEMRLPA 1015



 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A   G ++ + V T    ++  E+  +      IRV  +       E+
Sbjct: 638 GKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQ 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            +I++D+  GK D+LVG + LL   +   + GL+ + +  + G  + +        +A R
Sbjct: 698 KQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKV------KAMR 751

Query: 681 NVNSKVILYADTITKSIQLAID----------ETTRRREKQ-LEHNKKHNINPQSVKEKI 729
                + L A  I +++ +A+              RR   +      + ++  ++V  +I
Sbjct: 752 ADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREI 811

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
           M       L +   T   + A    L     +A +     QM      L 
Sbjct: 812 MRGGQVYFLHNQVETIDKVAADLEKLVP---EARITVAHGQMRE--RELE 856



 Score = 37.8 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 76  GEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDN----PLLKNGKIWTPHRSWSI 131
                 S  S   ++  ++ +      V+A  +  +        LL           +  
Sbjct: 529 SSLNLISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKF 588

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAK 187
           +   +    F+    +  + DQ  AI  +L  +  ++   +L+ G  G GKT      A 
Sbjct: 589 HLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAF 648

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           V     +   V+ P  +LA Q +  F++ F +
Sbjct: 649 VATDNGKQVAVLVPTTLLAQQHFENFRDRFAN 680


>gi|187477560|ref|YP_785584.1| transcription-repair coupling factor [Bordetella avium 197N]
 gi|115422146|emb|CAJ48670.1| transcription-repair coupling factor [Bordetella avium 197N]
          Length = 1145

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 117/350 (33%), Gaps = 46/350 (13%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  +IA  L  +    +        GSG  + +A +     +P +V+  + + A +L  E
Sbjct: 4   QLPSIASTLAALKPGTRYVQ-SCPPGSGDGWLLADLARRAGKPIVVLTADPVHAQRLADE 62

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-D 271
              F P   V               +P  +T      S ++ +   R     +L+ ++ D
Sbjct: 63  IPLFAPELRV-------------RQLPDWETLPYDAFSPHQDLISERLHTLHALMTQSVD 109

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            + V   + +Y +      +      +  D ++++ L + L    Y         G F +
Sbjct: 110 ILTVPVTTALYRLPPPSFLAAYTFSFRQRDKLDEQALRTQLTLANYNHVTQVTAPGEFCL 169

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I++FP     + +R+ MF ++IE I  F   T + +  V  +++     +      
Sbjct: 170 RGGLIDLFPMGSA-LPYRLDMFDDEIESIRAFDVDTQRSLYPVGEVRLLPGREFPMDESA 228

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
                               +      ++ L        + +    +   +E Y      
Sbjct: 229 RTLF-----------RARFREVFEGDPSRALP------YKDIGNGIAFAGVEYYLPLFF- 270

Query: 452 RNPGEPPPTLFEYIPEDSLLF----VDESHVTIPQISG----MYRGDFHR 493
               E   TLF+Y+   +L      +D++     Q +       + D  R
Sbjct: 271 ----EQTATLFDYLNSATLTVTLGNIDDAIQRFSQDTASRYSFLKSDRER 316



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 80/202 (39%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +GI    +I   P   +     +R        + + +    ++
Sbjct: 754 VLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTFVRREDG--STIREALLRELKR 811

Query: 582 GLRILLT---VLT-KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +       V T       L E + E  I V   H ++   E  ++++     +++VL+
Sbjct: 812 GGQAYFLHNEVETIHNRRARLEELVPEARIGVA--HGQMPERELEQVMKGFYQQRYNVLL 869

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  AD+ G  +    L Q  GR  R+ + +   Y  T  +  
Sbjct: 870 CTTIIETGIDVPSANTIVIHRADRFGLAQ----LHQLRGRVGRS-HHQAYAYLLTPGED- 923

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
             AI    ++R + ++  ++  
Sbjct: 924 --AITANAKKRLEAIQAMEELG 943


>gi|269837730|ref|YP_003319958.1| transcription-repair coupling factor [Sphaerobacter thermophilus
           DSM 20745]
 gi|269786993|gb|ACZ39136.1| transcription-repair coupling factor [Sphaerobacter thermophilus
           DSM 20745]
          Length = 1173

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 84/511 (16%), Positives = 170/511 (33%), Gaps = 47/511 (9%)

Query: 158 AQLLKGIH--SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
             LL  I      +V  + G   S +   +A +I  +  P +++      A ++ +    
Sbjct: 17  RALLDAIRRLKPGRVLEIEGPPTSARLAILAALIAEVSHPVLIVTDRLDSAEEVTAGLAE 76

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
           + P +             P  + P ++T   +   ++  +  +R      L  R    +V
Sbjct: 77  YLPDDR-----------DPTLW-PVSETLPYELLPVDRSVSALRVELLARLARREPVPIV 124

Query: 276 SSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +    +  +       S     L +G+ +     ++SL+   Y+   +    G     G 
Sbjct: 125 APARALTQLLSPPADVSAQSWHLAVGERLRSDAFVASLLDAGYEMVPVVQAPGQVGRRGG 184

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I++FP  + D A R+ +FG++I+ +    P T + +R VE   I         +   + 
Sbjct: 185 IIDVFPP-VGDHALRIELFGDEIDSLRLIDPNTQRSVRRVEHYDILPPLEVSLAQ--RDA 241

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A+  +++     L    +     E +R  QR       LE       +E           
Sbjct: 242 ALSALRQMDTTTL----RPEVAEEWERSLQR-------LERGQVTVGLEL-----LAPLL 285

Query: 455 GEPPPTLFEYIP-EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
              P +L +Y+   + LL V E       I+ +       +  L + G  LPS M    L
Sbjct: 286 LPEPASLLDYLTMGEHLLVVVEPASVQLSITQLEAQAEELRDALEDAG-ELPSGMPRPYL 344

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
            ++           ++  P                I P        E+ +   +++ +  
Sbjct: 345 DWQAVADRLSGARQIAFGPVP------THWSPPVAIIPDARPVYGRELPAYAGRLDALVA 398

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++      G  ++L          LTE L E +I  R                    G  
Sbjct: 399 DVRERLADGWAVILASEQSGR---LTEVLEEHDIFPRTRKRPAGNGRIAPPPEPPTPGTV 455

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGF 664
           +V+   + L  G +     ++ + D +  G+
Sbjct: 456 EVV--YSRLNGGWEHGGIKVLLLTDREMFGY 484



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 71/206 (34%), Gaps = 17/206 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E +  LR     + ++ATP    L     GI    +I        P+      +    + 
Sbjct: 768 EHFKRLRTNVDVLTMTATPIPRTLYMALSGIRDLSVITTPPQERTPIRTFVTASNDSLIR 827

Query: 573 DEINLAAQQGLRILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           + I     +G ++   V  +      + E L + + E    V   H ++   E  +++  
Sbjct: 828 EAILREISRGGQV-YFVHNRVQSIYHVLERLEKLVPEARFGVG--HGQMDEDELEQLMLA 884

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
               +FDVLV   ++  G+DIP    + I  A + G     T L Q  GR  R+ +    
Sbjct: 885 FMQHEFDVLVCTTIIESGVDIPNVNTIIIDRAHQLGL----TQLYQLRGRVGRSHHRAYA 940

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
                    +    +   R    Q  
Sbjct: 941 YVLYDANVPLSA--EAVARLEAIQEA 964


>gi|229529092|ref|ZP_04418482.1| transcription-repair coupling factor [Vibrio cholerae 12129(1)]
 gi|229332866|gb|EEN98352.1| transcription-repair coupling factor [Vibrio cholerae 12129(1)]
          Length = 1157

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 110/298 (36%), Gaps = 36/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+     +A++  A     ++  P+   A +L  E    F H+ V  F  + +    +
Sbjct: 26  LHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEV-EQFSHSEVALFPDW-ETLPYD 83

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D        I+++I R+     +         +V   + +      +   Q  +
Sbjct: 84  NFSPHQDI-------ISDRISRL----YQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTL 132

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  F +
Sbjct: 133 IVKRGDHFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDFFDD 191

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F P   + I  ++ I++     +    PT   A++  +   + R         
Sbjct: 192 EIDTIRTFDPDNQRSIAEMDEIRLLPAHEF----PTTAAAIEEFRNRWRQR--------- 238

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
             EA+R  + +      +        IE +          E   TLF+Y+P +S L V
Sbjct: 239 -FEARREPESV---YSQVSKGTWPAGIEYWQPLFF-----EHSETLFDYLPANSQLLV 287



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 94/269 (34%), Gaps = 27/269 (10%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
             + ++ATP    L      + +  I  T        I++   Q ED  + + +     +G
Sbjct: 758  ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSEDSVIREAVLREIMRG 816

Query: 583  LRILLT---VLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++      V T    A DL + + E  I V   H +++  E  +++ D    +F++LV 
Sbjct: 817  GQVYFLHNQVETIDKVAADLEKLVPEARITVA--HGQMRERELEKVMNDFYHQRFNLLVC 874

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I 
Sbjct: 875  TTIIETGIDVPTANTIIMDRADSLGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAIT 930

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
               D   R        +        +   +I    + +  E +           + + ++
Sbjct: 931  K--DAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQ 988

Query: 759  KGKAH-------LKSL-----RKQMHLAA 775
              +A        L  L       +M L A
Sbjct: 989  AVEALKSGKEPALDDLLREQTEVEMRLPA 1017



 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A   G ++ + V T    ++  E+  +      IRV  +       E+
Sbjct: 640 GKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQ 699

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            +I++D+  GK D+LVG + LL   +   + GL+ + +  + G  + +        +A R
Sbjct: 700 KQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKV------KAMR 753

Query: 681 NVNSKVILYADTITKSIQLAID----------ETTRRREKQ-LEHNKKHNINPQSVKEKI 729
                + L A  I +++ +A+              RR   +      + ++  ++V  +I
Sbjct: 754 ADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREI 813

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
           M       L +   T   + A    L     +A +     QM      L 
Sbjct: 814 MRGGQVYFLHNQVETIDKVAADLEKLVP---EARITVAHGQMRE--RELE 858



 Score = 37.8 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 76  GEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDN----PLLKNGKIWTPHRSWSI 131
                 S  S   ++  ++ +      V+A  +  +        LL           +  
Sbjct: 531 SSLNLISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKF 590

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAK 187
           +   +    F+    +  + DQ  AI  +L  +  ++   +L+ G  G GKT      A 
Sbjct: 591 HLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAF 650

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           V     +   V+ P  +LA Q +  F++ F +
Sbjct: 651 VATDNGKQVAVLVPTTLLAQQHFENFRDRFAN 682


>gi|153825189|ref|ZP_01977856.1| transcription-repair coupling factor [Vibrio cholerae MZO-2]
 gi|149741168|gb|EDM55219.1| transcription-repair coupling factor [Vibrio cholerae MZO-2]
          Length = 1155

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 110/298 (36%), Gaps = 36/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+     +A++  A     ++  P+   A +L  E    F H+ V  F  + +    +
Sbjct: 24  LHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEV-EQFSHSEVALFPDW-ETLPYD 81

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D        I+++I R+     +         +V   + +      +   Q  +
Sbjct: 82  NFSPHQDI-------ISDRISRL----YQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTL 130

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  F +
Sbjct: 131 IVKRGDHFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDFFDD 189

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F P   + I  ++ I++     +    PT   A++  +   + R         
Sbjct: 190 EIDTIRTFDPDNQRSIAEMDEIRLLPAHEF----PTTAAAIEEFRNRWRQR--------- 236

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
             EA+R  + +      +        IE +          E   TLF+Y+P +S L V
Sbjct: 237 -FEARREPESV---YSQVSKGTWPAGIEYWQPLFF-----EHSETLFDYLPANSQLLV 285



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 94/269 (34%), Gaps = 27/269 (10%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
             + ++ATP    L      + +  I  T        I++   Q ED  + + +     +G
Sbjct: 756  ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSEDSVIREAVLREIMRG 814

Query: 583  LRILLT---VLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++      V T    A DL + + E  I V   H +++  E  +++ D    +F++LV 
Sbjct: 815  GQVYFLHNQVETIDKVAADLEKLVPEARITVA--HGQMRERELEKVMNDFYHQRFNLLVC 872

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I 
Sbjct: 873  TTIIETGIDVPTANTIIMDRADSLGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAIT 928

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
               D   R        +        +   +I    + +  E +           + + ++
Sbjct: 929  K--DAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQ 986

Query: 759  KGKAH-------LKSL-----RKQMHLAA 775
              +A        L  L       +M L A
Sbjct: 987  AVEALKSGKEPALDDLLREQTEVEMRLPA 1015



 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A   G ++ + V T    ++  E+  +      IRV  +       E+
Sbjct: 638 GKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQ 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            +I++D+  GK D+LVG + LL   +   + GL+ + +  + G  + +        +A R
Sbjct: 698 KQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKV------KAMR 751

Query: 681 NVNSKVILYADTITKSIQLAID----------ETTRRREKQ-LEHNKKHNINPQSVKEKI 729
                + L A  I +++ +A+              RR   +      + ++  ++V  +I
Sbjct: 752 ADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREI 811

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
           M       L +   T   + A    L     +A +     QM      L 
Sbjct: 812 MRGGQVYFLHNQVETIDKVAADLEKLVP---EARITVAHGQMRE--RELE 856



 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 76  GEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDN----PLLKNGKIWTPHRSWSI 131
                 S  S   ++  ++ +      V+A  +  +        LL           +  
Sbjct: 529 SSLNLISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKF 588

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAK 187
           +   +    F+    +  + DQ  AI  +L  +  ++   +L+ G  G GKT      A 
Sbjct: 589 HLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAF 648

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           V     +   V+ P  +LA Q +  F++ F +
Sbjct: 649 VATDNGKQVAVLVPTTLLAQQHFENFRDRFAN 680


>gi|153213092|ref|ZP_01948630.1| transcription-repair coupling factor [Vibrio cholerae 1587]
 gi|124116139|gb|EAY34959.1| transcription-repair coupling factor [Vibrio cholerae 1587]
          Length = 1155

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 110/298 (36%), Gaps = 36/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+     +A++  A     ++  P+   A +L  E    F H+ V  F  + +    +
Sbjct: 24  LHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEV-EQFSHSEVALFPDW-ETLPYD 81

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D        I+++I R+     +         +V   + +      +   Q  +
Sbjct: 82  NFSPHQDI-------ISDRISRL----YQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTL 130

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  F +
Sbjct: 131 IVKRGDHFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDFFDD 189

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F P   + I  ++ I++     +    PT   A++  +   + R         
Sbjct: 190 EIDTIRTFDPDNQRSIAEMDEIRLLPAHEF----PTTAAAIEEFRNRWRQR--------- 236

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
             EA+R  + +      +        IE +          E   TLF+Y+P +S L V
Sbjct: 237 -FEARREPESV---YSQVSKGTWPAGIEYWQPLFF-----EHSETLFDYLPANSQLLV 285



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 94/269 (34%), Gaps = 27/269 (10%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
             + ++ATP    L      + +  I  T        I++   Q ED  + + +     +G
Sbjct: 756  ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSEDSVIREAVLREIMRG 814

Query: 583  LRILLT---VLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++      V T    A DL + + E  I V   H +++  E  +++ D    +F++LV 
Sbjct: 815  GQVYFLHNQVETIDKVAADLEKLVPEARITVA--HGQMRERELEKVMNDFYHQRFNLLVC 872

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I 
Sbjct: 873  TTIIETGIDVPTANTIIMDRADSLGLAQ----LHQLRGRVGRSHHQAYAYLLTPTPKAIT 928

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
               D   R        +        +   +I    + +  E +           + + ++
Sbjct: 929  K--DAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQ 986

Query: 759  KGKAH-------LKSL-----RKQMHLAA 775
              +A        L  L       +M L A
Sbjct: 987  AVEALKSGKEPALDDLLREQTEVEMRLPA 1015



 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A   G ++ + V T    ++  E+  +      IRV  +       E+
Sbjct: 638 GKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQ 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            +I++D+  GK D+LVG + LL   +   + GL+ + +  + G  + +        +A R
Sbjct: 698 KQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKV------KAMR 751

Query: 681 NVNSKVILYADTITKSIQLAID----------ETTRRREKQ-LEHNKKHNINPQSVKEKI 729
                + L A  I +++ +A+              RR   +      + ++  ++V  +I
Sbjct: 752 ADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREI 811

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
           M       L +   T   + A    L     +A +     QM      L 
Sbjct: 812 MRGGQVYFLHNQVETIDKVAADLEKLVP---EARITVAHGQMRE--RELE 856



 Score = 37.8 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 76  GEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDN----PLLKNGKIWTPHRSWSI 131
                 S  S   ++  ++ +      V+A  +  +        LL           +  
Sbjct: 529 SSLNLISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKF 588

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAK 187
           +   +    F+    +  + DQ  AI  +L  +  ++   +L+ G  G GKT      A 
Sbjct: 589 HLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAF 648

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           V     +   V+ P  +LA Q +  F++ F +
Sbjct: 649 VATDNGKQVAVLVPTTLLAQQHFENFRDRFAN 680


>gi|271500156|ref|YP_003333181.1| transcription-repair coupling factor [Dickeya dadantii Ech586]
 gi|270343711|gb|ACZ76476.1| transcription-repair coupling factor [Dickeya dadantii Ech586]
          Length = 1150

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 118/311 (37%), Gaps = 38/311 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           +  +   Q LLG +TG+      A+++E      +++ P+   A +L  E + F  H   
Sbjct: 10  LPGKAGEQRLLGQLTGAACAVECAEIVERHTGLVVLITPDMQNALRLRDEIQQFTGH--- 66

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCI 281
                      P   +P  +T      S +++I   R S    L       +++   + +
Sbjct: 67  -----------PVMMLPDWETLPYDSFSPHQEIVSARLSTLYQLPSLTRGVLILPVNTLM 115

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +          + LK G  + +  L S L +  Y+  D  +  G F   G  +++FP 
Sbjct: 116 QKVCPHAFLHGHALMLKKGQRLSRDRLRSQLEQAGYRSVDQVMEHGEFATRGALLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E+  +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + 
Sbjct: 176 GSEE-PFRIDFFDDEIDSLRLFDADTQRTLNEVEQIHLLPAREF----PTDKNAIELFRS 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + + +           E +R  + I    + +        IE +          +P P L
Sbjct: 231 QWREQ----------FEVRRDAEHI---YQQVSKGTLPAGIEYWQPLF----FNQPLPAL 273

Query: 462 FEYIPEDSLLF 472
           F Y+P  +LL 
Sbjct: 274 FSYLPTGTLLV 284



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     GI    II   P   +     +R     V  V + +     +
Sbjct: 752 ILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLAVKTFVREYDNLV--VREAMLREILR 809

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E   + L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 810 GGQVYYLYNDVENIEKAAQRLSELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 869

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 870 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 923


>gi|296116131|ref|ZP_06834749.1| transcription-repair coupling factor [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977237|gb|EFG83997.1| transcription-repair coupling factor [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 1157

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 150/448 (33%), Gaps = 56/448 (12%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           + GV      F +A+ +     P + +A +    A++  +     P   +  F       
Sbjct: 16  IWGVPEGYDAFLLARRLSEHDGPLLHVARDDAEMARIGEQLAFIAPDAEILRF------- 68

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE---RNDCIVVSSVSCIYGIGSVES 289
                 P  D       S N  I   R +    LLE   R   ++ +    I  +    +
Sbjct: 69  ------PAWDCLPYDRVSPNPAIVAERVATLTCLLEKPTRPRIVLTTVNGLIQRVAPRRA 122

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
           ++   + +  G++++Q+ L+  LV   Y R D  +  G F   G   +IFP+  E    R
Sbjct: 123 FAGQSLNIATGEALDQEFLIELLVANGYNRTDTVMEPGEFATRGGIFDIFPA-GEAEPVR 181

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           + +FG+++E I  F P T +       + +   + +     +++            R   
Sbjct: 182 LDLFGDEVENIRGFDPATQRSTTQKNALVMRPVADFSLDPDSISRF----------RTGW 231

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            +  G       + Q ++              +E++          E   TL +Y+P  S
Sbjct: 232 RDLFGPAAAEDPMYQHVS-------DGRRHAGMEHWLALFH-----EHMETLVDYLPGVS 279

Query: 470 L-LFVDESHVTIPQISGMYRGDFHRKATLAEYGF---RLPSCMDNRPLRFEEWNCLR--- 522
           + L          ++  +      R+    E       LPS      L  + W+ +    
Sbjct: 280 ISLAQQAEEAFAARLEMITDHFEARRQPPREGEVPYRALPS--HLMYLDRKGWDAMLSGH 337

Query: 523 PTTIVV-SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           P  + +  A P            ++   RP  +                +   +N  AQ 
Sbjct: 338 PAMVFMPFAQPD-------GAPGIDAGGRPGQMFARTATDGMRENVFPMLAARMNEWAQT 390

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRV 609
           G R  +T  ++  AE L   L E ++ V
Sbjct: 391 GRRTFVTAWSRGSAERLGVLLREYHLPV 418



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 11/170 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             + +SATP    L+     + E  +    PT  +     I    + V  + + I     
Sbjct: 756 HVLTLSATPLPRTLQLALTGVREMSLIATPPTDRLAVRTFIMPFDSVV--IREAIQRERF 813

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G ++   V      + +   L+E     R +  H  +   E   ++ +   GK+D+L+ 
Sbjct: 814 RGGQVFCVVPRIEDLDRMATRLHEIVPDARMVQAHGRLTPTELERVMTEFSDGKYDILLS 873

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            N++  GLD+P    + I  AD  G  +    L Q  GR  R        
Sbjct: 874 TNIVESGLDMPAVNTLIIHRADMFGLGQ----LYQLRGRVGRGKQRGYAY 919


>gi|307718846|ref|YP_003874378.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
           6192]
 gi|306532571|gb|ADN02105.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
           6192]
          Length = 1127

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 90/521 (17%), Positives = 167/521 (32%), Gaps = 86/521 (16%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           A   LL   +  E    + GV G   +F +A++   + RP  V+ P +  A       + 
Sbjct: 18  AWKDLLSRYNRGELPIGVRGVQGGFSSFFLARL-SGLGRPLCVVFPTEKEAEDAVESLRA 76

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
                  E F  +      E        +              R      LL     +V 
Sbjct: 77  L--GVEAECFPEWGVTPYGEGLAEHAPVFGR------------RAEVLARLLAGELGVVC 122

Query: 276 SSVSC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +S+   ++ +   + + + ++ L+ G  V+   L   LV+  Y R     +RG   V G+
Sbjct: 123 TSLRAFLWRLPPADRFRERLLVLRRGQQVDPAALTGRLVEMGYFRVPRVSLRGECAVRGE 182

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            +++F +  E+ A+R+ +  + IE I  F P + + +   + I +     Y+     L+ 
Sbjct: 183 VVDVF-APGEEGAFRLVVDFDRIERIRLFDPSSQRTLEEKDRIVVPPLREYLWEEEGLSR 241

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
               ++E LK R   L+ +G + E              L   G  Q  E Y         
Sbjct: 242 ----VREALKARAPRLDVDGLVGE--------------LAARGRMQGEELYWPLAY---- 279

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
            E   +L +Y+P  + L +      +      YR +         +   +P+  D   L 
Sbjct: 280 -ETSSSLLDYVP-GTPLLLLMGKERLIHADEAYRTELSTVHGQVRHLRPVPTPED-VLLP 336

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           F      R    +        E E        +  R                 V  + +E
Sbjct: 337 FSHLETRRDRIEIF-----LLEGEDSMVHFSCEGPRV------------FFGNVNFLKEE 379

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++     G R+ +   ++   E L   L E                             D
Sbjct: 380 LSRLLSLGYRVYILTDSEPQRERLAFLLREFP---------------------------D 412

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           V V +  L  G  +PE       + +  G  R   + ++ +
Sbjct: 413 VKVELTGLSTGFVLPEAKRAVFHENEIFGRRRRTPASVKRV 453



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 76/205 (37%), Gaps = 25/205 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-----A 579
            + ++ATP    L       + +I   + L  PP E R   T + +  +EI         
Sbjct: 738 CLTLTATPIPRTLHMS----LLKIRDISLLETPPRERRPIETHILEFSEEIIARAIRREV 793

Query: 580 QQGLRILLTVLTKRMAEDL--TEYLYER---NIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++G ++          E L   +   ER    + V   H ++ + +  EI+     G F 
Sbjct: 794 ERGGQVFYL---HNRVETLPQVKTFIERLVPEVMVEVAHGKMSSHQLEEIMHRFIHGGFH 850

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV   ++  G++IP    + I  AD  G  +    L Q  GR  R+  +          
Sbjct: 851 VLVSTTIIENGINIPNANTIIIDRADMYGIAQ----LYQLRGRVGRSDRTAYAYLFYP-- 904

Query: 695 KSIQLAIDETTRRREKQLEHNKKHN 719
              Q  I E   +R + +  + +  
Sbjct: 905 --AQREISELAAKRLQVIADHTELG 927



 Score = 37.8 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           T+L ++  E   E L    +R   +   V   E+ EI++DLR GK D+L+G + +L++ +
Sbjct: 646 TILVEQHYETFQERLEGFPVRAAMLSRFVPVPEQREILKDLREGKVDILIGTHRILQKDV 705

Query: 647 DIPECGLVAILDADKEG 663
              + GL+ I +  + G
Sbjct: 706 VFKDLGLLVIDEEQRFG 722


>gi|118589910|ref|ZP_01547314.1| Mfd, transcription-repair coupling factor [Stappia aggregata IAM
           12614]
 gi|118437407|gb|EAV44044.1| Mfd, transcription-repair coupling factor [Stappia aggregata IAM
           12614]
          Length = 1161

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 82/540 (15%), Positives = 171/540 (31%), Gaps = 84/540 (15%)

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
             +   +    L GV    +++ +A+++       + +      A ++           A
Sbjct: 3   DSLLKDQANVTLAGVPDGAESYALARLLAETGAQGLALVFVARDATRMA------MVSEA 56

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-----RNDCIVVS 276
           +++F    +  Q    +P  D       S N  I   R  A   L       +   ++ +
Sbjct: 57  LQFFDPSVEILQ----LPAWDCLPYDRVSPNPAISARRLLALGQLARGIKDGKKTVLMTT 112

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
             + +  +      +     +  G+ V+   + + L    + R       G + V G  +
Sbjct: 113 LNAALQRVPERSFMADQTFSMAPGNRVDMAAISAWLEMNGFSRTPTVRETGEYAVRGGIV 172

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++F    E+   R+  FG+ +E I  F   T +  + ++ + +   S  V     ++   
Sbjct: 173 DLFAPGAEE-PVRLDFFGDTLESIRSFNSETQRTSKQLKRLDLVPMSEVVLSEEAISRF- 230

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
                    R   L   G       L Q I+              +E++      R    
Sbjct: 231 ---------RRSYLANFGAASREDVLYQSIS-------DGRRYAGMEHWLPLFHDRLE-- 272

Query: 457 PPPTLFEYIPEDSLLFVDES-----HVTIPQISGMYRGDFHRKATLAEYGFR--LPSCMD 509
              TLF+YI  D+ + +D S        + Q++  YR     +      G    +P    
Sbjct: 273 ---TLFDYIG-DTPVVLDTSMSDAVRERVDQVNEYYRARQEAREMGTSAGTVPYMPVEPA 328

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ-- 567
           +     EEW          +  P                  P G     VE+   + +  
Sbjct: 329 SLYFTEEEWRAAVADRASAALDP---------------FTPPPGTGKKIVELGGRQGRSF 373

Query: 568 -----------VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
                       + +   +    +QG R ++   ++   + L + L +  +        V
Sbjct: 374 AAERAAGDINIFDALTTHVRDLQKQGKRTVIACWSEGSRDRLGQILEDHGL------GGV 427

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           K  + ++ I DL   K   L  +  +  G ++ +   V I + D  G    + S  +  G
Sbjct: 428 KNADTLKDIEDL-PAKTTALCVLG-IEHGFELKDV--VFIGEQDILGDRLVRKSRRKAKG 483



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 98/276 (35%), Gaps = 48/276 (17%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 765  HVLTLSATPIPRTLQLALTGVRELSLIATPPVDRLA-VRTFVSPFDPLVVREALLREHYR 823

Query: 582  GLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            G +               E L   + E  + V   H ++   E  +++     GK++VL+
Sbjct: 824  GGQSFYVCPRLADIAERLEFLENQVPELKVAVA--HGQMPPGELEDVMNAFYEGKYNVLL 881

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+        
Sbjct: 882  STTIVESGLDIPTANTLIVHRADMFGLAQ----LYQLRGRVGRSKTRAYALFTVP----A 933

Query: 698  QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
               +  T  RR K                  +++ ++ +       ++        +L  
Sbjct: 934  NKTLTATAERRLK------------------VLQSLETLGAGFQLASHDLDIRGAGNLLG 975

Query: 758  KKGKAHLK----SLRKQMHLAADNLNFEEA-ARIRD 788
            ++   H+K     L +QM         EEA A+++D
Sbjct: 976  EEQSGHIKEVGFELYQQML--------EEAVAQLKD 1003



 Score = 39.3 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 4/115 (3%)

Query: 107 ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS 166
            R+++  + L+K         +  +         F  +  Y  + DQ  AI  + + + S
Sbjct: 574 KRILEIADGLIKTAAQRALKTAPVVETPEGVYDEFATRFPYEETDDQLTAIDAVFEDLSS 633

Query: 167 REK-VQLLLGVTGSGKTFTM--AKVIEAMQ-RPAIVMAPNKILAAQLYSEFKNFF 217
                +L+ G  G GKT     A  I AM  R   V+ P  +LA Q +  F   F
Sbjct: 634 GRPMDRLVCGDVGFGKTEVALRAAFIAAMSGRQVAVVVPTTLLARQHFKTFSERF 688


>gi|239917090|ref|YP_002956648.1| transcription-repair coupling factor Mfd [Micrococcus luteus NCTC
           2665]
 gi|281414448|ref|ZP_06246190.1| transcription-repair coupling factor [Micrococcus luteus NCTC 2665]
 gi|239838297|gb|ACS30094.1| transcription-repair coupling factor Mfd [Micrococcus luteus NCTC
           2665]
          Length = 1218

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 93/554 (16%), Positives = 181/554 (32%), Gaps = 59/554 (10%)

Query: 174 LGVTGSGKTFTMAKVIEAMQR------PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +G+    +   +  + EA+          +V+      A  L ++   + P  A   F S
Sbjct: 43  IGLPDGARAPLLTVLAEALAEGHGERAAVLVVTATTREAEDLVTDLAAWAPAGAAALFPS 102

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
           + +    E   PR+DT   + +     + R+ H    +  E    IVV+ V  +      
Sbjct: 103 W-ETLPHERLSPRSDTVGARLAV----LRRLAHPEEHA--EGPLRIVVAPVRAVLQPLVA 155

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
                  V L+ G+  +   ++++L    Y R D+   RG F V G  I++FP   ED  
Sbjct: 156 GLGELSPVTLRTGEERDFDGVVAALADAAYSRVDMVSRRGEFAVRGGLIDVFPP-TEDYP 214

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG+++E++  F     + + +         S    P         +++   K  +
Sbjct: 215 VRIEFFGDEVEQMRWFSVADQRSLEDTTEDGSGHPSELYAPPCRELLITDHVRRRAKELI 274

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
             +     +L             + +    + + +E+ S  L      E   +L   +P 
Sbjct: 275 PAMPAAADML-------------DRIAEGVAVEGMESLSPLLA-----EAMTSLPRMLPT 316

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
            SL  + E      ++ G             +  +   +     P+     +       +
Sbjct: 317 GSLTVLVEP----ERLRGRADDLLATNEEFLQAAWAGAAQGAVAPVDVAGADQSAAGGFL 372

Query: 528 VSATPGSWELEQCQGI-IVEQIIRPTGLVDPPVEIRSARTQ-------VEDVYDEINLAA 579
             A   +  LEQ QG   V  ++    L+     +R+           +E +     +  
Sbjct: 373 TVAELRAAALEQDQGFWSVTALVSDDELLPDAATLRATLGVPQTFSGDIEAMVAHTRVRL 432

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +G   ++          L E   E  +        +          DL  G+  V +  
Sbjct: 433 AEGWHAVVLTDGPGSTRRLAELTTEAGLTASVADGPLPA--------DLAPGR--VSIAT 482

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLI--QTIGRAARNVNSKVILYADTITKSI 697
             +  G  IP+  +  I + D  G  R+  +      + R  RN    + L         
Sbjct: 483 APVGSGFTIPDAQIALITEHDLFGRHRTAGTRAPGARLARKRRNAVDPLTLQPGDHVVHS 542

Query: 698 QLAID---ETTRRR 708
           Q  I    E  RR+
Sbjct: 543 QHGIARFVELQRRK 556



 Score = 42.4 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 13/150 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP---PVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    LE     I E     T   +       +     Q   V   I     +
Sbjct: 821 VLAMSATPIPRTLEMSLTGIRETSTLATAPEERHPVLTSVGPYSDQ--QVTAAIRRELMR 878

Query: 582 GLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             ++      +T + K +A+ + E + E  I V   H ++      +I+ D    K DVL
Sbjct: 879 EGQVFYVHNRVTTIDK-VAKRIAELVPEARIAVA--HGKMSEARLEQIMVDFWERKLDVL 935

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLR 666
           V   ++  GLDI     + + DA + G  +
Sbjct: 936 VSTTIIETGLDIANANTLIVEDAHRYGLSQ 965


>gi|253996787|ref|YP_003048851.1| transcription-repair coupling factor [Methylotenera mobilis JLW8]
 gi|253983466|gb|ACT48324.1| transcription-repair coupling factor [Methylotenera mobilis JLW8]
          Length = 1145

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 77/454 (16%), Positives = 150/454 (33%), Gaps = 61/454 (13%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAM-----QRPAIVMAPNKILAAQLYSEFKNFFP 218
           I ++ +   L   +     F +A + +        +P +++      A +L  E   F P
Sbjct: 8   IPNKGQANRLTLASSGEDAFALAILAQQSKAQKPHQPLVIITAGGFDAQRLLEEIPYFAP 67

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
             +V     + +    + + P  D        I++++  + H A  +     D ++V   
Sbjct: 68  ELSVHLLPDW-ETLPYDQFSPHPDL-------ISDRLTTLYHIAQNAF----DVVIVPLA 115

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           + +  +      S     LK G +++ + L     +  Y      I  G F V G  +++
Sbjct: 116 TALIRLSPKAYLSANTFMLKKGQTLDIEALRLQCAEAGYHHVTQVISHGEFSVRGGLVDL 175

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP     + +R+ +F ++IE I  F   T + +  V  I++     +             
Sbjct: 176 FPMGSA-LPYRIDLFDDEIETIRTFDVDTQRSLYPVPEIRLLPAREFP------------ 222

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
               L    I L +       +   QR     + +    +   IE Y          E  
Sbjct: 223 ----LDETGIALFRSQFREAFEGDPQR-AKIYKDVSKGIASGGIEWYLPLFF-----EQT 272

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD-NRPLRFEE 517
            TL +Y+  DSLL +        Q    +R    R  TL           D  RPL    
Sbjct: 273 ATLLDYLAADSLLCLHGDLDFSAQ--QFWREAQSRYRTL---------AHDAERPL---- 317

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
              L+P  +++  T   +        +V      T      +       + E   +++  
Sbjct: 318 ---LQPEKLLI-KTEDFFAATHSFARVVLSTSAETDKTTATLPALDIERRAEQPLNKLTA 373

Query: 578 AAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVR 610
              +   RIL+   +    E + +   E   +V 
Sbjct: 374 FISEFKGRILIVAESLGRRETMAQLFAEHGFKVA 407



 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 29/146 (19%)

Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           E  +GII E + R                QV  +++E++                 M E 
Sbjct: 795 EYSEGIIREAVTREFKR----------GGQVYFLHNEVDTI-------------HSMREK 831

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L +  I V   H +++  E   ++RD    ++++L+   ++  G+D+P    + + 
Sbjct: 832 LERILPDARIAVA--HGQLRERELEHVMRDFYHQRYNLLLCTTIIETGIDVPTANTIIMN 889

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVN 683
            AD  G  +    + Q  GR  R+ +
Sbjct: 890 KADMFGLAQ----MHQLRGRVGRSHH 911



 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A   G ++ + V T  +AE      ++   E  I++  +       E+
Sbjct: 636 GKTEVALRAAFVAVMGGRQVAVLVPTTLLAEQHFNNFSDRFAEWPIKIAEISRFRTAKEQ 695

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEG 663
            E +R L  G+ D+++G + L+++ +     GLV + +  + G
Sbjct: 696 AEALRGLEAGEIDIIIGTHRLIQKDVRFKNLGLVILDEEHRFG 738


>gi|188990859|ref|YP_001902869.1| Transcription-repair coupling factor (TRCF). [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167732619|emb|CAP50813.1| Transcription-repair coupling factor (TRCF) [Xanthomonas campestris
           pv. campestris]
          Length = 1156

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 100/290 (34%), Gaps = 34/290 (11%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           + +   +++A+  EA   P +V+A +   A Q+ ++                     P  
Sbjct: 27  SPTALAWSIARAAEAHAGPVLVIARDNQSAHQIEADLHALLGD----------ASTLPVV 76

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIV 295
             P  +T    + S + +I   R +A   L      +V+  V   +  +  +        
Sbjct: 77  PFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTRGVVIVPVQTLLQQLAPLSYIVGGSF 136

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L +G  ++       L    Y+     +  G F V G  +++FP    D   R+ +   
Sbjct: 137 DLTVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPM-GADTPLRIELLDE 195

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ I  F P + + +  V+ +K+           ++   +      L+ R         
Sbjct: 196 DIDSIRAFDPESQRSLDKVDAVKMLPGREVPMDDASVERVLAC----LRERFD------- 244

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                 ++ R +   + L++  +   +E Y              TLF+Y+
Sbjct: 245 ------VDTRRSALYQDLKSGIAPSGVEYYLPMFF-----SKTATLFDYL 283



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I +   H ++   E   ++ D +  +F+VL+   ++  G+DIP   
Sbjct: 834 RMQRDLSELVPEARIGIA--HGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNAN 891

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +S+
Sbjct: 892 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVVPDRRSM 932


>gi|302336465|ref|YP_003801672.1| transcription-repair coupling factor [Olsenella uli DSM 7084]
 gi|301320305|gb|ADK68792.1| transcription-repair coupling factor [Olsenella uli DSM 7084]
          Length = 1171

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 76/367 (20%), Positives = 132/367 (35%), Gaps = 52/367 (14%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +A LL  + + +   L  G+  S +   +A +     RP +++   +  A +       +
Sbjct: 16  LAPLLADLRAGDDATL--GIAQSARPLLLAALWADHPRPCLLVVSGEEAADRAARTLAAW 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +    D+       P  D       + ++ +   R +A   L    DC+VV+
Sbjct: 74  LGAGVVCRYPERRDW-------PWAD------KAPDDAVVGTRCNAIARLSAGEDCLVVA 120

Query: 277 SV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI-----GIIRGTFR 330
           S  S +  +  V S         +GD V  +E  S LV   Y   D        + GTF 
Sbjct: 121 SARSLLRRVPPVGSGYFASSAFAVGDEVAFEEAASLLVGMGY--VDAGDAGGVSVPGTFH 178

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V GD+++++P+       RV  FG++++ +    P TGQ I  +  + +           
Sbjct: 179 VHGDAVDVYPAQAS-APVRVEFFGDEVDRVRRMLPSTGQTIGELAEVVVTPCREIALSDH 237

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
           T+  A    +  L  R  E  K    LE   L +R   D           +++ Y   L 
Sbjct: 238 TVALA----RRALYSRAQESAKVAAELE---LIERRAAD----------PTLDKYLVELY 280

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH--RKATLAEYGFRLPSCM 508
           G +      +  ++I  D+L+ + E                   R A L+  G   P   
Sbjct: 281 GSS-----ASPIDHIAGDTLVVLAEPRALFDDCMRADDEIAAATRAAHLSPAGLFTPP-- 333

Query: 509 DNRPLRF 515
             R L F
Sbjct: 334 --RELDF 338



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 64/181 (35%), Gaps = 13/181 (7%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSARTQVED 570
           E+   +R     + +SATP    ++     + +    +  P G +   V +       + 
Sbjct: 770 EQLKNMREQVDVLTLSATPIPRTMQMAMSGVRDMSLILTPPPGRLPVRVTVGEWDP--DL 827

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDL 628
           V + I     +  ++          ED  E + E     R    H ++   +  +I+   
Sbjct: 828 VSEAIRAELGREGQVYYVSNRVTTIEDAVERVREAAPEARVGVAHGKMSATQAEDIMLAF 887

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              + DVLV   ++  G+D P    + I D+ + G  +    L Q  GR  R        
Sbjct: 888 SEHEIDVLVATTIIESGIDNPHTNTLIIEDSQRLGLAQ----LYQLKGRVGRGRTQAYAY 943

Query: 689 Y 689
           +
Sbjct: 944 F 944


>gi|322433996|ref|YP_004216208.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX9]
 gi|321161723|gb|ADW67428.1| transcription-repair coupling factor [Acidobacterium sp. MP5ACTX9]
          Length = 1233

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 74/463 (15%), Positives = 153/463 (33%), Gaps = 60/463 (12%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           + S +  + + G+T + +   +     A + PA+++  +   A  L+             
Sbjct: 26  LVSGQGRRRVAGLTFTARALYLPLFAAASESPALILVADNKAAEALHQAILATCELTGAL 85

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIY 282
              S          +P  D    +  S + +I   R ++   +  ++  +V++ + S   
Sbjct: 86  DPASI-------VRLPAHDVLPFESLSPHPEIQETRAASLWKITSKSAKLVIAPIESACL 138

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +   + YS + ++L++ +      L+  L+   Y R D+  + G   + G  ++++   
Sbjct: 139 KLFPADFYSALALRLRVNEEYLPDMLVEHLLSVGYTRVDVVEMPGQLTLRGGILDVYSPE 198

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
           + D   R+  FG++IE I +F P T +    ++T  +   +        L      +   
Sbjct: 199 M-DRPIRIDFFGDEIESIRKFDPETQRSSSQLDTALLLPLTEIPITEKVLEAINARLTRS 257

Query: 403 LKMRLIELEKEGRLLEAQ-RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
                  LE      E Q  +  R   D  +          E ++             TL
Sbjct: 258 GSAAAAILEGGDTPAELQTHVSTRTGADATV------FPGWEFFAPVAGATK------TL 305

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            + +   + +FV+E  +   Q    +     R                    R    N +
Sbjct: 306 LDLLGPQTRVFVEEPSMLKNQGERWWNKVEQRHE------------------RSGIGNLI 347

Query: 522 RPTTIVVSATPGSWELE---------QCQGIIVEQIIRPTGLVDPPVEIRS-----ARTQ 567
           RP  + VS     WEL+         +   +    ++         VE  S         
Sbjct: 348 RPEDLYVS----PWELDDRIRGFCGAELDQLGAVDVLDADRSDLSEVEFHSRPTMRFHGS 403

Query: 568 VEDVYDEINLAA--QQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +  + D++          RILLT   +   E L   L E  + 
Sbjct: 404 IPALIDQLKTLTSPSADNRILLTAPNQGEVERLAGLLQEYGVP 446



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 15/189 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +  +    P   +     +     ++  V   I +  ++
Sbjct: 810 VLAMSATPIPRTLHMSLVGLRDMSVIETPPKDRMAIQTIVAKFDEKL--VRTAIEMELER 867

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +            ++   + E+    R +  H ++   E   ++      ++DVLV  
Sbjct: 868 GGQSYFVHNRVETIYEMASMIREQVPSARVIVGHGQMPEAELERVMLAFMNHEYDVLVAT 927

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +++  GLDIP    + I  AD+ G       L Q  GR  R+                  
Sbjct: 928 SIIENGLDIPLANTIIINRADRHGLSE----LYQLRGRVGRSNRRAYAYLLIPPDTE--- 980

Query: 700 AIDETTRRR 708
            + E  RRR
Sbjct: 981 -LTEIARRR 988


>gi|166711350|ref|ZP_02242557.1| transcription-repair coupling factor [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 1154

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 104/292 (35%), Gaps = 34/292 (11%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           + +   +++A+  EA   P +V+A +   A Q+ ++       ++            P  
Sbjct: 26  SPTALAWSIARAAEAHAGPLLVIARDNQSAHQIEADLHALLGEHSAL----------PVV 75

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIV 295
             P  +T    + S + +I   R +A   L   R   ++V   + +  +  V        
Sbjct: 76  PFPDWETLPYDQFSPHPEIISQRLAALHHLPGLRKGVVIVPVQTLLQQLAPVSYIVGGSF 135

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L +G  ++       L    Y+     +  G F V G  +++FP    D   RV +   
Sbjct: 136 DLTVGQRLDLGAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPM-GADTPLRVELLDE 194

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ I  F P + + +  V+ +K+           ++          L+ R         
Sbjct: 195 DIDSIRVFDPESQRSLDKVDAVKMLPGREVPMDDASVERVQAC----LRERFD------- 243

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                 ++ R +   + L++  +   IE Y      +       TLF+Y+ +
Sbjct: 244 ------VDTRRSALYQDLKSGLAPSGIEYYLPMFFAKT-----ATLFDYLDK 284



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I +   H ++   E   ++ D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRDLSELVPEARIGIA--HGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +++
Sbjct: 890 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVVPDRRAM 930


>gi|66767742|ref|YP_242504.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|66573074|gb|AAY48484.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1155

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 101/290 (34%), Gaps = 34/290 (11%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           + +   +++A+  EA   P +V+A +   A Q+ ++        +            P  
Sbjct: 26  SPTALAWSIARAAEAHAGPVLVIARDNQSAHQIEADLHALLGDASAL----------PVV 75

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIV 295
             P  +T    + S + +I   R +A   L      +V+  V   +  +  +        
Sbjct: 76  PFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTRGVVIVPVQTLLQQLAPLSYIVGGSF 135

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L +G  ++       L    Y+     +  G F V G  +++FP    D   R+ +   
Sbjct: 136 DLTVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPM-GADTPLRIELLDE 194

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ I  F P + + +  V+ +K+           ++   +      L+ R         
Sbjct: 195 DIDSIRAFDPESQRSLDKVDAVKMLPGREVPMDDASVERVLAC----LRERFD------- 243

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                 ++ R +   + L++  +   +E Y              TLF+Y+
Sbjct: 244 ------VDTRRSALYQDLKSGIAPSGVEYYLPMFF-----SKTATLFDYL 282



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I +   H ++   E   ++ D +  +F+VL+   ++  G+DIP   
Sbjct: 833 RMQRDLSELVPEARIGIA--HGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNAN 890

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +S+
Sbjct: 891 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVVPDRRSM 931


>gi|288941951|ref|YP_003444191.1| transcription-repair coupling factor [Allochromatium vinosum DSM
           180]
 gi|288897323|gb|ADC63159.1| transcription-repair coupling factor [Allochromatium vinosum DSM
           180]
          Length = 1160

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 56/328 (17%), Positives = 106/328 (32%), Gaps = 43/328 (13%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G+ G+G    +A   E      +V+      AA   +E   F                +P
Sbjct: 29  GLHGAGTALAIAGAAERHPGLVLVVVDAVQTAATRRAELGFFLDGGE-----------RP 77

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQM 293
               P  +T      S   ++   R      L       ++V   + +  +   +     
Sbjct: 78  ILDFPDWETLPYDVFSPLPELVSERLLTLHRLPTLERGVLIVPVATLMQRLPPRDYVDGH 137

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            + L +GD ++       L +  Y      I  G + V G  +++FP     V  R+ +F
Sbjct: 138 SLVLAVGDRLDLDATRRRLERAGYSCVSQVIGHGEYAVRGSLLDVFPM-GSQVPLRIDLF 196

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
             ++E I  F P T +    ++ I++               A+   ++  +  +      
Sbjct: 197 DEEVESIRVFDPETQRSRDKLDRIRLLPARELPLDEE----AIAGFRQRYRAAIA----- 247

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL--- 470
               + QR     +     +    +   +E Y          E   TLF+Y+PED+L   
Sbjct: 248 ---GDPQR-----SLIYREVSKGQAPGGLEYYLPLFF-----EQTATLFDYLPEDTLVVE 294

Query: 471 -LFVDESHVT----IPQISGMYRGDFHR 493
            +   E+       + Q     R D  R
Sbjct: 295 SIACRETARIFFENVEQRYEQRRHDAER 322



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 19/182 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV----EDVYDEINLAA- 579
            + ++ATP    L      + +  I  T    PPVE    +T V    + +  E  L   
Sbjct: 767 VLTLTATPIPRTLNMAMSGLRDLSIIAT----PPVERHPIKTFVSPWNDALVQEAVLREL 822

Query: 580 QQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++G ++          E+    L   + E  + V   H +++  E   I+RD    + ++
Sbjct: 823 KRGGQVYFLHNEVETIENQAQKLEALIPEARVAVA--HGQMRERELERIMRDFYHQRSNL 880

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +          TK
Sbjct: 881 LVCTTIIESGIDVPSANTILINRADKLGLAQ----LHQLRGRVGRSHHRAYAYLITPPTK 936

Query: 696 SI 697
           ++
Sbjct: 937 AM 938


>gi|114320951|ref|YP_742634.1| transcription-repair coupling factor [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227345|gb|ABI57144.1| transcription-repair coupling factor [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 1166

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 81/453 (17%), Positives = 149/453 (32%), Gaps = 57/453 (12%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
            +  +     G+ G+     +A+   A     + +  +   AA+L +E + F   +A   
Sbjct: 16  KAGNREHW-YGLHGATGALALAQAARAHDGLVVAVTDSPQQAARLDTELRFFLGDHA--- 71

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL-LERNDCIVVSSVSCIYG 283
                    P    P  +T      S ++ I   R +A   L   R   ++V   + +  
Sbjct: 72  -----RGETPVFSFPDWETLPYDVFSPHQDIISERLAALYRLPRTRGGVLIVPVNTLMQR 126

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +  V       + L +GD ++   +   L +  Y+        G F V G  +++FP   
Sbjct: 127 LAPVSWLEGQGLMLGVGDRLDLDAMRERLEQAGYRCVSEVGEHGEFAVRGALLDLFPM-G 185

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
                R+ +F +++E +  F P T +    ++ +++     + T    +           
Sbjct: 186 ATQPVRIDLFDDEVETLRHFDPDTQRTTEKIDRVELLPAREFPTDEAGITQFRGA----- 240

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
             R        R L               +        IE Y          E   TLF+
Sbjct: 241 -WRAAFEGDPSRSL-----------VYREVSAGHLPAGIEYYLPLFF-----EETATLFD 283

Query: 464 YIPEDSLLF--------VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
           Y+P+ +L+          D  +  +       R D  R   L        S  D R    
Sbjct: 284 YLPKGALVARLGESDTQADTYYTQVRNRYEQRRHDLER--PLLAPERLFLSPDDLR---- 337

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           E +N L P  ++ + TP   E  + + ++ E    P     P      A   +E +   +
Sbjct: 338 ERFNTL-PQVVLHADTPAP-EAPRPREVVFETEPLPDLRNRPQ-----ADNPLERLTSYL 390

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +       R+L    T    E L E L +  IR
Sbjct: 391 SDYTG---RVLFIAETTGHREALLERLQKHRIR 420



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 65/177 (36%), Gaps = 9/177 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQG 582
            + ++ATP    L      I +  I  T        +++   Q +   + +      ++G
Sbjct: 765 ILTLTATPIPRTLNMSLAGIRDLSIIATPPARRLA-VKTFVNQWDPAIIQEACQRELKRG 823

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            +I          + +   L E     R    H ++   +   ++ D    +F++LV   
Sbjct: 824 GQIYFLHNDLDSIDRIARELEELVPDARVDVAHGQMPERDLERVMLDFYHQRFNILVCST 883

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K++
Sbjct: 884 IIESGIDVPTANTILINRADKLGLAQ----LHQLRGRVGRSHHRAYAYLIAPPEKAM 936



 Score = 40.8 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 5/131 (3%)

Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT----KR 593
           ++     VE  +R +  +D  V       + E       +  Q G ++ + V T    ++
Sbjct: 619 QESAIAAVEADMRSSRPMDRVVCGDVGFGKTEVAMRAAFMGIQDGRQVAVMVPTTLLAQQ 678

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECG 652
             ++  +   +  +RV  +     T +   ++RDL  GK D+++G + LL++ +   + G
Sbjct: 679 HFQNFRDRFSDWPVRVEVLSRFRSTKDTNAVLRDLADGKVDIVIGTHKLLQDSVKYKDLG 738

Query: 653 LVAILDADKEG 663
           LV I +  + G
Sbjct: 739 LVIIDEEHRFG 749


>gi|309812806|ref|ZP_07706544.1| transcription-repair coupling factor [Dermacoccus sp. Ellin185]
 gi|308433223|gb|EFP57117.1| transcription-repair coupling factor [Dermacoccus sp. Ellin185]
          Length = 1209

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 84/500 (16%), Positives = 162/500 (32%), Gaps = 70/500 (14%)

Query: 181 KTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           +   +A +++    +  P +V+      A  + +  +NF  ++ V  F S+ +    E  
Sbjct: 44  RAPLVAALLQTGGDVAGPMLVVTATGREADDMATALRNFVDYDDVAEFPSW-ETLPHERM 102

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
            PR+DT   + + +              +      +         G+G +E        L
Sbjct: 103 SPRSDTVGRRLAVLRRLRHPEAGGTYGPVRVVVASVRALMQPMAKGLGDLEPV-----SL 157

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
             GD    ++++ +LV   Y R D+   RG F V G  +++FP   ED   R+  +G+ +
Sbjct: 158 AAGDERPLEDIVEALVAAAYTRVDMVERRGEFAVRGGILDVFPP-TEDHPVRLEFWGDTV 216

Query: 358 EEISEFYPLTGQKIRNVET-IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           EEI  F     + +      +        +        A      EL   L+ +      
Sbjct: 217 EEIRWFKVADQRSLEVNPHGLWAPPCRELLLTPEVRERA-----AELAPSLLGVADM--- 268

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
                        L  +    + + +E+    L     G    TL + +P+ + + + + 
Sbjct: 269 -------------LTKVSEGIAVEGMESLMPAL--LPAGME--TLIDVLPDAARVVLVDP 311

Query: 477 ---HVTIPQISGMYRGDFHRKATLAEYGFRLP----------SCMDNRPLRFEEWNCLRP 523
                    +    +       T A  G  +P          S      LR        P
Sbjct: 312 ERVRTRAHDLVSTSQEFLEASWTNAAAGNAVPVDLRGVLDGASYRSLLELREHALATAHP 371

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
                S      EL +     +E  +  T +     ++ + R   E    E+      G 
Sbjct: 372 WWSFSSFA-ADDELHE----FLEDDLPGTRVTIDSQDVPNYRGDTERASAEVAAHVAAGR 426

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
            + +       A+ +T+   E ++  R              +  +  G   V V    L 
Sbjct: 427 SVAVVTDGPGFAKRVTQVFAEHDLAAR-------------PMTQVAPG---VEVATGSLG 470

Query: 644 EGLDIPECGLVAILDADKEG 663
            G ++P  GLV + +AD  G
Sbjct: 471 RGFEMPAAGLVVLTEADLTG 490



 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 66/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     T    PP E     T V     + +   I    
Sbjct: 794 VLAMSATPIPRTLEMAVTGIREMSTLAT----PPEERHPVLTFVGAYDEKQLTAAIRREL 849

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     + E     R    H ++      E++ D    KFDVLV
Sbjct: 850 MREGQVFYVHNKVGSIEKQAARIRELVPEARVATAHGKMGEARLEEVVVDFWERKFDVLV 909

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD+ G  +    L Q  GR  R        +     K  
Sbjct: 910 STTIVETGLDIANANTLIVERADQLGLSQ----LHQLRGRVGRGRERAYAYFMFPAEKP- 964

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R + +  N    
Sbjct: 965 ---LTETAHDRLQTIASNTDLG 983


>gi|197302480|ref|ZP_03167535.1| hypothetical protein RUMLAC_01208 [Ruminococcus lactaris ATCC
           29176]
 gi|197298378|gb|EDY32923.1| hypothetical protein RUMLAC_01208 [Ruminococcus lactaris ATCC
           29176]
          Length = 90

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/90 (57%), Positives = 68/90 (75%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI QL++G     + Q LLGVTGSGKTFTMA VI+ + +P +
Sbjct: 1   MDHFKLVSEYSPTGDQPQAIEQLVQGFKEGNQCQTLLGVTGSGKTFTMANVIQELNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           ++A NK LA QLY EFK FFP+NAVEYFVS
Sbjct: 61  IIAHNKTLAVQLYGEFKEFFPNNAVEYFVS 90


>gi|85373850|ref|YP_457912.1| transcription-repair coupling factor [Erythrobacter litoralis
           HTCC2594]
 gi|84786933|gb|ABC63115.1| transcription-repair coupling factor [Erythrobacter litoralis
           HTCC2594]
          Length = 1162

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 84/465 (18%), Positives = 153/465 (32%), Gaps = 57/465 (12%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           L  I   E    L  V    +   M+ +  A +  A+ +AP+      +      F P  
Sbjct: 4   LSRILKAESPLTLASVARGAQPLVMSDLARASKGRAVFIAPDDAAMRAVTDAAHYFAPEL 63

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC---IVVSS 277
            V  F             P  D      +S    +   R +A   L   N     +V + 
Sbjct: 64  EVIEF-------------PAWDCLPYDRASPALSVSAKRLAALHRLQTGNPGAQLLVTTV 110

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            + +  + +     + + +  +G  +  + L + L +Q Y R D  +  G + + G  ++
Sbjct: 111 NAALQRVLTPFRIRESVREFAVGTEIGMESLSALLRRQGYTRTDTVVDSGEYAIRGSIVD 170

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFPS L D   R+  FG+++E +  F P T      +++  +   S  +    ++     
Sbjct: 171 IFPSGL-DQGLRLDFFGDELESLRLFDPSTQMSTEVIKSHLLLPASEALLDEDSIKRF-- 227

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
                   R    E  G       L        E +        +E++      R     
Sbjct: 228 --------RSRYREMFGAAATQDPL-------YEAVSEGRRLAGMEHWLPLFEDRL---- 268

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQIS----GMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             TLF+++ ED L+ +D +  +  +        YR         A+ G+R P   +   +
Sbjct: 269 -VTLFDHLAEDDLVVMDGAATSAVEERLKDIADYRESRSNATGQAKGGYR-PLATEQLYV 326

Query: 514 RFEEWNCLRP----TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
             +EW+           V+ A P   E ++            T   D   E        E
Sbjct: 327 SGDEWHEHLKAAPAHRSVIFAEP---ENDKVVDFGF------TSARDFAPERARGDNVYE 377

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
                +   A QG + LLT  ++     +   L E     +   S
Sbjct: 378 TAAKHLKGLANQGKKPLLTAYSEGSRSRMASILSEAGCETQLADS 422



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 13/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + ++ATP    L+     + E     T  VD    +R+   + +D+   + +     +
Sbjct: 756 HMLTLTATPIPRTLQMAMTGLRELSTIQTPPVDRLA-VRTYVMEWDDMVMREALLREHHR 814

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +  + V      E + E+L +    V+ +  H ++   E  + +     GK++VL+  
Sbjct: 815 GGQSFIVVPRIADMESVEEWLRDNVPEVKAVTAHGQMGAAEIEKRMSAFYEGKYEVLLST 874

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLD+P    + I  AD  G  +    L Q  GR  R            +      
Sbjct: 875 TIVESGLDLPSANTIIIHRADIFGLAQ----LYQLRGRVGRAKLRAYAYLTYAVDTQ--- 927

Query: 700 AIDETTRRREK 710
            + E   +R K
Sbjct: 928 -LSEVAEKRLK 937


>gi|187928984|ref|YP_001899471.1| transcription-repair coupling factor [Ralstonia pickettii 12J]
 gi|187725874|gb|ACD27039.1| transcription-repair coupling factor [Ralstonia pickettii 12J]
          Length = 1143

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 83/535 (15%), Positives = 169/535 (31%), Gaps = 78/535 (14%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQR--PAIVMAP-NKILAAQLYSEFKNFFPHNAVEYFVSY 228
           +  G+ G+     +A+ +E  +   P + +   N + A +L  E + F P   V+     
Sbjct: 19  VFSGLQGAADALLLARYLEQHRAAAPMLAVVCANAVDAQRLAEELRWFAPQARVKL---- 74

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSV 287
                    +P  +T      S ++ +   R +    L       ++V + + +  +   
Sbjct: 75  ---------LPDWETLPYDNFSPHQDLISERLATLHDLQNGACDILLVPASTALQRVAPP 125

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
              +      K G+ +++  L +      Y+     +  G + V G  I++FP     + 
Sbjct: 126 SFLAAYTFFFKKGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPM-GSPLP 184

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
           +R+ +FG++IE I  F P T + +  V  +++     +     +                
Sbjct: 185 YRLDLFGDEIETIRSFDPDTQRSLYPVNEVRLLPGREFPMDEASRTAF------------ 232

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                 GR  E    +   +   + +        IE Y          +   TLF+Y+P 
Sbjct: 233 -----RGRWREVFEGDPTRSPIYKDIGNGVPSAGIEYYLPLFF-----DETATLFDYLP- 281

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
                +         +   +     R      +          RPL       L      
Sbjct: 282 -GTTHLAFVGDIEGAVRRFWADTTQRY-NFMRHDRE-------RPLLQPSALYLDEEAFF 332

Query: 528 VSATP-GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
           V+A P     L    G     +  P   V+   E        + + +  +   +   R++
Sbjct: 333 VAAKPHARLVLRAEPGDAPLSLPLPNVAVNRRAE--------DPLVNLESFLMRSNCRVM 384

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +   +    E L + L         +H E      +    DL  G    ++G+  L +G 
Sbjct: 385 ICAESAGRRETLAQMLAASG-----LHPEG-----VADFADLMSGDAKFVLGVAPLYQGF 434

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
                    IL  ++   +       QT+ RA R    +       +    +L I
Sbjct: 435 ---------ILGDERIALITETELYAQTVRRAGRRKQEQATAVDSMVRDLAELKI 480



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 18/197 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  +  T      + I++   + ED  + + I    ++G
Sbjct: 752 VLTLTATPIPRTLGMALEGLRDFSVIAT-APQKRLAIKTFLRREEDGVLREAILRELKRG 810

Query: 583 LRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++          E+    L E + E  + V   H ++   E   ++RD    + ++L+ 
Sbjct: 811 GQVYFLHNEVETIENKRAKLEELIPEARVVVA--HGQMHERELERVMRDFVAQRANILLC 868

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +             + 
Sbjct: 869 TTIIETGIDVPTANTILIHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDVDGLT 924

Query: 699 LAIDETTRRRE--KQLE 713
               +  RR E  +Q+E
Sbjct: 925 K---QAQRRLEAIQQME 938


>gi|257457388|ref|ZP_05622559.1| transcription-repair coupling factor [Treponema vincentii ATCC
           35580]
 gi|257445310|gb|EEV20382.1| transcription-repair coupling factor [Treponema vincentii ATCC
           35580]
          Length = 1154

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 82/547 (14%), Positives = 182/547 (33%), Gaps = 78/547 (14%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +        + G++G    F +A+ +        ++ P +    +L+++         V 
Sbjct: 8   LKEGRFPYHIYGLSGGIFAFFLAEYVRRFGSNLCIVVPTEKEIEELHADLDIAGLQAQVL 67

Query: 224 YFVSYYDYYQPEAYVP---RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
            +     Y   +   P        + +        D     +  S    N   V++  + 
Sbjct: 68  PWWGNMAYRPVQNSAPVFAERAQMLAELCVGAPITDSTASGSAASETAANTVTVMTQRAF 127

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           +  +   +    +   L  G  ++ +++ S LV+  Y R     +RG F + G+ +++  
Sbjct: 128 LTPVPPPDYLKTLTCTLYKGKEIDTEKIASLLVQWGYTRVPRVSVRGEFALRGEVLDVCA 187

Query: 341 S---HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           +     +  A+R+    N IE+I  F   T   +    ++ +Y+    +     + +  +
Sbjct: 188 AANKGSQHTAYRIQFDFNTIEKIKSFDMHTQASVEEFGSLTLYSMKEVIWDDERITSLER 247

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML---ETTGSCQSIENYSRYLTGRNP 454
            ++      + E   +G       +++   +D E L          SI +Y  YL G + 
Sbjct: 248 NMRN-----MPEFTADGMEKLIAHVKEHRAFDGEELFYPLCFEKPASILDYLEYLHGGSS 302

Query: 455 GEPPPTL-FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
              P  L  +Y         D     +  +   Y G +++     +         D+   
Sbjct: 303 AAEPILLYMDY---------DRQRNAVEALEREYHGLYNKVTRAID---------DDIKY 344

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEI-----RSARTQ 567
                    P  +++S T    EL       I  + ++ +     P+       RS    
Sbjct: 345 NLLITEYPMPQRLLLSFT----ELTGSYPQSIFLRTLKESDDGGEPIVFNCDPPRSFFGN 400

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +  + +E+    Q+G RI +                          S+ + L   E+++D
Sbjct: 401 IVYLKEELTHLQQEGWRIFVFAE-----------------------SDAQALRIGELLKD 437

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           ++       V    L  G  IPE  ++ I + +  G         + I ++ + V S VI
Sbjct: 438 IKA-----TVLPLTLSSGFGIPELKILVIQENEIFG-------RRRRIPKSVKQVKSSVI 485

Query: 688 LYADTIT 694
                + 
Sbjct: 486 DTFVELN 492



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 69/192 (35%), Gaps = 21/192 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      I +  +  T    PP   R   T +     E +   I    
Sbjct: 765 CLSLSATPIPRTLHISLLKIRDMSLLTT----PPQNRRPVETVISPFDPEKIAQAIRFEV 820

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM---HSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++          E+ T Y  ++ I    +   H ++   E  +I R   +G F VL
Sbjct: 821 DRGGQVFYLHNRVESLEE-TRYKIQQLIPEVLIDIAHGQMSATELEDIFRRFNMGGFHVL 879

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +   ++  G+DIP    + I  AD  G     + L Q  GR  R+             K 
Sbjct: 880 IATTIIENGIDIPNANTIIIDRADMYG----VSQLYQLRGRVGRSDRKAYAYLLYPENK- 934

Query: 697 IQLAIDETTRRR 708
              A+ E   +R
Sbjct: 935 ---ALSEVAMKR 943


>gi|225075727|ref|ZP_03718926.1| hypothetical protein NEIFLAOT_00743 [Neisseria flavescens
           NRL30031/H210]
 gi|224952998|gb|EEG34207.1| hypothetical protein NEIFLAOT_00743 [Neisseria flavescens
           NRL30031/H210]
          Length = 577

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 143/421 (33%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HRRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L S
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKS 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSD 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q ++    +         RILL   +    E +  +L +  ++ 
Sbjct: 340 EHTLPDLAV-----NRQSDEPLQALKDFQTTFEGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395


>gi|300974586|ref|ZP_07172647.1| transcription-repair coupling factor [Escherichia coli MS 45-1]
 gi|300410528|gb|EFJ94066.1| transcription-repair coupling factor [Escherichia coli MS 45-1]
          Length = 1164

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|324005970|gb|EGB75189.1| transcription-repair coupling factor [Escherichia coli MS 57-2]
          Length = 1164

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|332524809|ref|ZP_08401002.1| transcription-repair coupling factor [Rubrivivax benzoatilyticus
           JA2]
 gi|332108111|gb|EGJ09335.1| transcription-repair coupling factor [Rubrivivax benzoatilyticus
           JA2]
          Length = 1145

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 81/488 (16%), Positives = 158/488 (32%), Gaps = 67/488 (13%)

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
           +A QR   V+  +     +L  E K F P   V  F             P  +T      
Sbjct: 34  QAEQRLLAVVTADPADTTRLAEELKFFEPGLRVAVF-------------PDWETLPYDTF 80

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           S ++ +   R +    + +    +V+   +  +  +      +      K    +++ +L
Sbjct: 81  SPHQDLISERLATLWRVQQGEVDVVLMPATTALVRLAPPSFMAGYTFHFKQKARLDEAKL 140

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
            S L    Y+     +  G + V G  I+++P     V +RV +FG++++ I  F P + 
Sbjct: 141 KSQLTLAGYQHVSQVVSPGEYAVRGGLIDLYPM-GSPVPYRVDLFGDEVDSIRTFDPDSQ 199

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + +  V  +++     +         A    +   + +L                 RI  
Sbjct: 200 RSLYPVPEVRLLPGREFPMD----EAARTAFRARWREKLD----------GDPTRSRIYK 245

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           D+     TG    IE Y          +   ++F+Y+ E + + +   H  + Q    + 
Sbjct: 246 DIAQGIATG---GIEYYLPLFF-----DEIASIFDYLGETAAVAL---HGEVDQALERFW 294

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
            D   +    ++    P     RPL   E   LRP        P           +  + 
Sbjct: 295 TDTRERHRFLQHD---P----ERPLLPPEAIFLRPDEFFARTQP--------HATLALRG 339

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
             P     P  ++   R   E +            R+LL   ++   E L E L +  I 
Sbjct: 340 QEPVDWARPLPDLAVDRGAQEPLAGLERHLKTTPHRVLLAAESEGRRESLLELLRDHRI- 398

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI--PECGLVAILDADKEGFLR 666
                     L  +  + +   G+    +    L +G     PE G+      + E F  
Sbjct: 399 ---------ALPSVADLAEFLAGEERFAIVAAPLAQGFHWHEPEAGVSVQFVTETELFAT 449

Query: 667 SKTSLIQT 674
           +  +  + 
Sbjct: 450 APQARRRR 457



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 60/150 (40%), Gaps = 24/150 (16%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            QV  +++++     +  +             L E L E  I V   H ++   E   ++
Sbjct: 808 GQVYFLHNDVESIQARRQK-------------LEELLPEARIGVA--HGQMPERELEHVM 852

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RD    + ++L+   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +  
Sbjct: 853 RDFVAQRHNILLCSTIIETGIDVPTANTIVISRADKFGLAQ----LHQLRGRVGRSHHQA 908

Query: 686 VILYADTITKSIQLAIDETTRRRE--KQLE 713
                    +++     +  +R E  +Q+E
Sbjct: 909 YAYLLVPDVEALTK---QAAQRLEAIQQME 935


>gi|323142960|ref|ZP_08077669.1| transcription-repair coupling factor [Succinatimonas hippei YIT
           12066]
 gi|322417277|gb|EFY07902.1| transcription-repair coupling factor [Succinatimonas hippei YIT
           12066]
          Length = 1164

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 81/549 (14%), Positives = 179/549 (32%), Gaps = 70/549 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G      +  + + +    +V+  N     ++  +     P   +  F          
Sbjct: 23  LQGPALAAGICALKDKINTSLLVICDNPFSVTKIQQDLHALAPKLQIHVF---------- 72

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMI 294
              P  +T      S ++ I   R      L    + +++ S++ + G +   +  ++  
Sbjct: 73  ---PDYETLPYDALSPHQDIISARLELLSELPSIKNSVIILSLNALMGRLCPTDYVAKYS 129

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             LK G+  +   L  SLV   Y +    +  G F V G  ++IFP   ++  +R+  F 
Sbjct: 130 FVLKKGEIKDINALRQSLVNNGYLQVAQVLEHGEFAVRGSILDIFPMGSDE-PFRIDFFD 188

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++++ I  F   T + +  ++ IK+     +   +  ++      +              
Sbjct: 189 DEVDSIRTFDVETQRSLNEIKEIKLLPAHEFPLDKEGISAFRSNYR-------------- 234

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFV 473
               +  L     Y  + +        IE Y     G++      T F+YI +D  L+ V
Sbjct: 235 NAFPSVNLNAHTIY--QAISKGAIPAGIEYYLPLFFGKS-----STFFDYINKDYSLVLV 287

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
            +                   A  +++   LP+      L   E          +S    
Sbjct: 288 GDIQKAAEDFDVETHKRASLNAGNSDHP-SLPAYT--LFLSPNELFSNIQNYPYIS---- 340

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILLTVLT 591
            +E +     + ++ +    L   P    S + +   +      +     G R+++T ++
Sbjct: 341 LYEHKLNAEEVAKRGVNNADLSPIPTIAFSHQDKNSSDKFVAFTSNFIDNGGRVVITAVS 400

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +     L E   +  +    +       +    I D       +++ +     G+   E 
Sbjct: 401 EGRRHSLREIFPQTLVNNYGL-------KAASSISDFLNADDKLMLSLAPFDSGVIFNET 453

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
            L  I + +  G      ++ Q +    RN  S +         S + AI    +  E Q
Sbjct: 454 KLAFITETELYG----AQAVKQRV----RNKKSSL---------SQEAAIKNLAQLTEGQ 496

Query: 712 LEHNKKHNI 720
           +  +  H I
Sbjct: 497 IVVHIDHGI 505



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 75/197 (38%), Gaps = 15/197 (7%)

Query: 528 VSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
           ++ATP    L    +G+    II         V+   +    +   + I    ++G ++ 
Sbjct: 767 LTATPIPRTLNMAMEGMRELSIIATPPEHRLAVKTFVSENSDQLCREAIMRELRRGGQVY 826

Query: 587 LT---VLTKR-MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
                V T    AE L + + E  I +   H ++   E  +++RD    +F++L+   ++
Sbjct: 827 YLHNDVATINQKAESLQKLVPEAKIGIG--HGQMAERELQKVMRDFYHQRFNLLLCSTII 884

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
             GLD+     + I  AD  G  +    L Q  GR  R+ +              +  I 
Sbjct: 885 ENGLDVSSANTIIIDRADLLGLAQ----LHQIRGRVGRSHHQAYAYLFTPP----KNLIT 936

Query: 703 ETTRRREKQLEHNKKHN 719
           +  +RR   +   ++  
Sbjct: 937 KDAKRRLDAIASMEELG 953



 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPN 202
           Y  + DQ AAI   L  +   +   +L+ G  G GKT      A V         ++ P 
Sbjct: 612 YEETPDQLAAINATLNDMQQGKPMDRLVCGDVGFGKTEVALRAAFVAANSGMQVALLVPT 671

Query: 203 KILAAQLYSEFKNFFPHNAVE 223
            ILA Q Y  FK  F   A+ 
Sbjct: 672 TILAEQHYQNFKERFAGTAIV 692


>gi|331672629|ref|ZP_08373418.1| transcription-repair coupling factor [Escherichia coli TA280]
 gi|331070272|gb|EGI41638.1| transcription-repair coupling factor [Escherichia coli TA280]
          Length = 1164

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|284920939|emb|CBG34002.1| transcription-repair coupling factor [Escherichia coli 042]
          Length = 1164

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|225575737|ref|ZP_03784347.1| hypothetical protein RUMHYD_03830 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037050|gb|EEG47296.1| hypothetical protein RUMHYD_03830 [Blautia hydrogenotrophica DSM
           10507]
          Length = 1044

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 6/212 (2%)

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQMIV 295
           Y P  D    +       + + R    R+LLE     VV+SV  C+  +  +    + +V
Sbjct: 9   YYPAKDLLFFQADIHGNLLIKQRMQVVRALLEEESVTVVTSVDGCMDYLMPLGQIKENLV 68

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L    +++ +EL   LV   Y+R       G F V G  ++I+ S  E+  WR+ M+G+
Sbjct: 69  CLNSESTIDLEELSKKLVWLGYERVPQVERSGQFAVRGGILDIY-SLTEENPWRIEMWGD 127

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +++ I  F   + + I N+ETI IY  +  +  +  ++ A  +  E     L+ L++  R
Sbjct: 128 EVDSIRSFDAYSQRSIENLETITIYPAAERLGEKGMVSFADYFPVE---KTLLILDEPNR 184

Query: 416 LLEA-QRLEQRITYDLEMLETTGSCQSIENYS 446
           +LE  Q +E       +     G+    +N  
Sbjct: 185 MLEKGQEVEDEFRQSQKNRLEKGNRPLADNLL 216



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 81/229 (35%), Gaps = 25/229 (10%)

Query: 438 SCQSIENYSRYLTGRNPGEPP-PTLFEYIP-EDSLLFVDESHVTIPQISGMYRGDFHRKA 495
           S +++E  + Y      GE    +  +Y P E +LL +DE +  + +   +       + 
Sbjct: 142 SIENLETITIYPAAERLGEKGMVSFADYFPVEKTLLILDEPNRMLEKGQEVEDEFRQSQK 201

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
              E G        NRPL       +      ++   G+     C     ++  +     
Sbjct: 202 NRLEKG--------NRPLADNLLFEISKLCGKLNRYHGA---ALCMMEPAKKFWKVQERF 250

Query: 556 DPPVE-IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +  V+ + S     E +  ++    + G R+ L   ++  A+ L + L    +   Y   
Sbjct: 251 ELTVKSVSSYNNSFELLVKDLRQWKKSGYRVALLSGSRTRAKRLAQDLMNEGLSSFY--- 307

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                   +  R ++ G+  ++V       G + P    V I ++D  G
Sbjct: 308 ------SEDYSRPIQPGE--IMVVYGHAHRGFEYPLIKFVLITESDIFG 348



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 82/191 (42%), Gaps = 19/191 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +  +    L +PP++    +T V     E V + +    
Sbjct: 645 VLTLTATPIPRTLHMSLIGIRDMSV----LEEPPMDRMPIQTYVMEYDEETVREAVQREL 700

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           ++G ++           ++   L +   +++V + H ++   E  +++ +   G+ DVLV
Sbjct: 701 KRGGQVYYVYNRVNDIAEVASRLSQLLPDVQVGFAHGQMSERELEKVMYEFINGELDVLV 760

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + I D+D+ G L     L   IGR+ R   + ++   ++I K  
Sbjct: 761 STTIIETGLDISNVNTMIIHDSDRYG-LSQLYQLRGRIGRSNRTAYAFLMYRKNSILK-- 817

Query: 698 QLAIDETTRRR 708
                ET  +R
Sbjct: 818 -----ETAEKR 823


>gi|78048574|ref|YP_364749.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037004|emb|CAJ24723.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 1154

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 103/292 (35%), Gaps = 34/292 (11%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           + +   +++A+  EA   P +V+A +   A Q+ ++        A            P  
Sbjct: 26  SPTALAWSIARAAEAHAGPLLVIARDNQSAHQIEADLHALLSEQAAL----------PVV 75

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIV 295
             P  +T    + S + +I   R +A   L      +V+  V   +  +  +        
Sbjct: 76  PFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTRGVVIVPVQTLLQQLAPLSYIVGGSF 135

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L +G  ++       L    Y+     +  G F V G  +++FP    D   RV +   
Sbjct: 136 DLTVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPM-GADTPLRVELLDE 194

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ I  F P + + +  V+ +K+           ++   +      L+ R         
Sbjct: 195 DIDSIRVFDPESQRSLDKVDAVKMLPGREVPMDDASVERVLAC----LRERFD------- 243

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                 ++ R +   + L++  +   IE Y      +       TLF+Y+ +
Sbjct: 244 ------VDTRRSALYQDLKSGLAPSGIEYYLPMCFAKT-----ATLFDYLDK 284



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I +   H ++   E   ++ D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRDLSELVPEARIGIA--HGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +S+
Sbjct: 890 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVVPDRRSM 930


>gi|300114141|ref|YP_003760716.1| transcription-repair coupling factor [Nitrosococcus watsonii C-113]
 gi|299540078|gb|ADJ28395.1| transcription-repair coupling factor [Nitrosococcus watsonii C-113]
          Length = 1158

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 120/347 (34%), Gaps = 39/347 (11%)

Query: 154 PAAI--AQLLKGIHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLY 210
           P+A+  A L+  +  R       G + GS     +A        P +++ P+ I A +L 
Sbjct: 2   PSALTFASLIPALPHRAGDHHHFGQLYGSSFGLVLAASAYHHPGPILIITPDTITANRLE 61

Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270
            E +          F        P  + P  +T      S ++ I   R +    L    
Sbjct: 62  DELR----------FYRSNQEDSPILHFPDWETLPYDTFSPHQDILSERLATLYQLPRLE 111

Query: 271 DCIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
             I++  VS +   +   E      + L IGD +  +     L K  Y+     +  G F
Sbjct: 112 RGILIVPVSTLMQRLAPQEYLETHSLLLAIGDRLHLENWRKQLEKGGYRCVSQVMEHGEF 171

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
            + G  I++FP     V +R+ +  ++++ +  F P T + +++V  I++     +    
Sbjct: 172 TIRGSLIDLFPM-GSTVPYRIDLLDDEVDSLRSFDPETQRSLQSVAQIQLLPAREFPLVE 230

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
             +             R  +  +     + QR     +     +        IE Y    
Sbjct: 231 EAI------------ARFRKNYRGTFNGDPQR-----SLIYREVSEGHPLPGIEYYLPLF 273

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
                 +   TLF+Y+PE++L    E   T       +R    R   
Sbjct: 274 F-----DHTDTLFDYLPENTLAVTLEGVNT--AADSFWREINDRYEQ 313



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 69/179 (38%), Gaps = 13/179 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q  D  + + +    ++G
Sbjct: 761 ILTLTATPIPRTLHMSLSNLRDLSIIATPPARRLA-IKTFVRQWNDNLLREALLREIKRG 819

Query: 583 LRILLT---VLTKR-MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++      V +   MA+ +     E  + +   H +++  E  + + +    +F++LV 
Sbjct: 820 GQVYFLHNEVESINKMAQRIQALFPEAKVGIA--HGQMRERELEQTMLNFYHRRFNILVC 877

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             +
Sbjct: 878 TTIIETGIDIPSANTIIIHRADKLGLAQ----LYQLRGRVGRSHHRAYAYLIVPPRSVM 932



 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            +  + DQ  AI  ++  + S +   +L+ G  G GKT      A ++    +   V+ P
Sbjct: 608 PFEETPDQADAIQAVIADLTSDQPMDRLVCGDVGFGKTEVAMRAAFIVSQAGKQVAVLVP 667

Query: 202 NKILAAQLYSEFKNFFPH 219
             +LA Q Y  FK+ F  
Sbjct: 668 TTLLAQQHYQSFKDRFAD 685


>gi|227886529|ref|ZP_04004334.1| transcription-repair coupling factor TRCF [Escherichia coli 83972]
 gi|301051097|ref|ZP_07197931.1| transcription-repair coupling factor [Escherichia coli MS 185-1]
 gi|227836733|gb|EEJ47199.1| transcription-repair coupling factor TRCF [Escherichia coli 83972]
 gi|300297269|gb|EFJ53654.1| transcription-repair coupling factor [Escherichia coli MS 185-1]
 gi|307553115|gb|ADN45890.1| transcription-repair coupling factor [Escherichia coli ABU 83972]
 gi|315291014|gb|EFU50379.1| transcription-repair coupling factor [Escherichia coli MS 153-1]
          Length = 1164

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|110641290|ref|YP_669020.1| transcription-repair coupling factor [Escherichia coli 536]
 gi|300982404|ref|ZP_07176102.1| transcription-repair coupling factor [Escherichia coli MS 200-1]
 gi|110342882|gb|ABG69119.1| transcription-repair coupling factor [Escherichia coli 536]
 gi|300307241|gb|EFJ61761.1| transcription-repair coupling factor [Escherichia coli MS 200-1]
 gi|324013204|gb|EGB82423.1| transcription-repair coupling factor [Escherichia coli MS 60-1]
          Length = 1164

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|331682620|ref|ZP_08383239.1| transcription-repair coupling factor [Escherichia coli H299]
 gi|331080251|gb|EGI51430.1| transcription-repair coupling factor [Escherichia coli H299]
          Length = 1148

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|293404403|ref|ZP_06648397.1| transcription-repair coupling factor [Escherichia coli FVEC1412]
 gi|298380180|ref|ZP_06989785.1| transcription-repair coupling factor [Escherichia coli FVEC1302]
 gi|300896877|ref|ZP_07115367.1| transcription-repair coupling factor [Escherichia coli MS 198-1]
 gi|291428989|gb|EFF02014.1| transcription-repair coupling factor [Escherichia coli FVEC1412]
 gi|298279878|gb|EFI21386.1| transcription-repair coupling factor [Escherichia coli FVEC1302]
 gi|300359284|gb|EFJ75154.1| transcription-repair coupling factor [Escherichia coli MS 198-1]
          Length = 1164

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 70/180 (38%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +           ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQAYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|268318293|ref|YP_003292012.1| transcription-repair coupling factor [Rhodothermus marinus DSM
           4252]
 gi|262335827|gb|ACY49624.1| transcription-repair coupling factor [Rhodothermus marinus DSM
           4252]
          Length = 1112

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 100/232 (43%), Gaps = 17/232 (7%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF--PHNAVEYFVSYYD 230
           L G+ GS   F + ++   ++RP + + P++  AA L+S+ +         + +  +   
Sbjct: 34  LRGLAGSLPAFVLYELSRHLRRPVLCLTPDEEQAAYLFSDLEQLLGVSDRLLRFPATGQK 93

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVES 289
            Y PE  +P +   IE            R    R L E  D ++++S   I   +   + 
Sbjct: 94  PYDPEQ-IPDSAPLIE------------RTDVLRRLAEGFDGLLLASAEAIAERVPPPDR 140

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
             Q  + L  G  ++  +LL+ L+ + ++R +     G   + G  ++++P        R
Sbjct: 141 VRQETLVLSPGMVIDPAQLLAHLIARGFERVEFVEAPGEVALRGGILDVYP-FTGTHPIR 199

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
           V  FG++I+ I EF P T + I  + + +I  N          +T  +++ +
Sbjct: 200 VEFFGDEIDTIREFDPRTQRSISRLTSAQIVPNLSAADSEEAAHTLFEHLPD 251



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 15/194 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     II   P        EI +    +  + D I     +
Sbjct: 706 TLTLTATPIPRTLQFALMGARDLSIISTPPPNRQPIVTEIHTFDETL--IRDAIRYEISR 763

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++       +   ++   L     ++R+   H ++K  E   ++ D    K+DVLV  
Sbjct: 764 GGQVFFIHNRVQSIYEMAARLQAIVPDVRIAVAHGQMKPRELERVMHDFMARKYDVLVST 823

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           N++  GLDIP    + I  A++ G       L Q  GR  R+ + K   Y   +      
Sbjct: 824 NIIESGLDIPNANTIIINHAEQFGL----ADLHQLRGRVGRS-DRKAFCY---LLVPSIH 875

Query: 700 AIDETTRRREKQLE 713
            +    R+R + +E
Sbjct: 876 GLTREARQRLQAIE 889



 Score = 38.5 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 11/141 (7%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A Q G ++ + V T     +  E  T  L    +R+  +        +
Sbjct: 588 GKTEIAIRAAFKAVQDGKQVAVLVPTTILADQHYETFTRRLAPYPVRIEVLSRFRSPARQ 647

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
             ++RDL  GK D+++G + LL + +   + GL+ I +  + G    +        R  R
Sbjct: 648 RAVLRDLAAGKVDIIIGTHRLLSKDVQFKDLGLLIIDEEQRFGVAAKERL------RQLR 701

Query: 681 NVNSKVILYADTITKSIQLAI 701
                + L A  I +++Q A+
Sbjct: 702 VEVDTLTLTATPIPRTLQFAL 722


>gi|150396613|ref|YP_001327080.1| transcription-repair coupling factor [Sinorhizobium medicae WSM419]
 gi|150028128|gb|ABR60245.1| transcription-repair coupling factor [Sinorhizobium medicae WSM419]
          Length = 1171

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 82/509 (16%), Positives = 158/509 (31%), Gaps = 73/509 (14%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           V    +   +A++      P   +  +    + L        P   V     + D    +
Sbjct: 24  VPTGAEALVLAEL-ARGGAPVAYILSDGQKVSDLEQVLGFVAPDIPVLTLPGW-DCLPYD 81

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
              P  DT   + ++++  I   R             ++V+  + +  I   +    +  
Sbjct: 82  RVSPSADTSARRLAALSALIAHRRKP-------HPAIVLVTVNAVLQRISPQDVIESLAF 134

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
             + G+ +   +L + L +  ++R       G F V G  ++++     +   R+  FG+
Sbjct: 135 TARPGNQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVPGSGE-PLRLDFFGD 193

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
            +E I  F P + + I  V ++ +   S       T++            R   L   G 
Sbjct: 194 TLEAIRAFDPASQRTIGQVRSLDLNPMSEVSLTPETISHF----------RKQYLSLFGA 243

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                 L Q ++              +E++      R       T+F+Y+     +  D 
Sbjct: 244 ATRDDALYQAVS-------EGRRYAGMEHWLPLFYDRLE-----TVFDYLN-GFRIVTD- 289

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM-----------------DNRPLRFEEW 518
                             K  L  Y  RL S                   D   L  + +
Sbjct: 290 -------HLAREAAAERSKLILDYYDARLASASPGKSQATQGTPYKPVPPDMLYLAAKAF 342

Query: 519 NCLRPTTIVVSATPGSW---ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-EDVYDE 574
                    V  +P S    E      I   Q +R         E    RT V +     
Sbjct: 343 GDALTERNAVRLSPFSEHEGEARHVVHIEARQGVRWAKSAS-EAESDGTRTNVFDQAVKH 401

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I     +G R+L++  T+   + L + L E  +        ++ ++ +  +  LR G+  
Sbjct: 402 IAEKRAKGARVLVSGWTEGSLDRLLQVLGEHGLA------NIRPVQALSDLNSLRPGEAA 455

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEG 663
             V    L  G +  +  LV I + D  G
Sbjct: 456 STVLS--LEAGFESGD--LVVIGEQDILG 480



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 101/274 (36%), Gaps = 38/274 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 775  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFISPFDALVIRETLMREHYR 833

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +            ++ ++L      ++V   H ++   E  +I+     G++DVL+  
Sbjct: 834  GGQSFYVCPRVSDLPEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLST 893

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLD+P    + +  AD  G  +    L Q  GR  R+      L+   + K++  
Sbjct: 894  TIVESGLDVPTANTLIVHRADMFGLAQ----LYQLRGRVGRSKVRAFSLFTLPVNKTLTG 949

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
                   RR K                  +++ +D +       ++        +L  ++
Sbjct: 950  ----PAERRLK------------------VLQSLDTLGAGFQLASHDLDIRGAGNLLGEE 987

Query: 760  GKAHLK----SLRKQM-HLAADNLNFEEAARIRD 788
               H+K     L +QM   A   L  EE   IRD
Sbjct: 988  QSGHIKEVGFELYQQMLEEAVAELKGEE--EIRD 1019


>gi|301023324|ref|ZP_07187117.1| transcription-repair coupling factor [Escherichia coli MS 69-1]
 gi|300397049|gb|EFJ80587.1| transcription-repair coupling factor [Escherichia coli MS 69-1]
          Length = 1164

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|283833508|ref|ZP_06353249.1| transcription-repair coupling factor [Citrobacter youngae ATCC
           29220]
 gi|291071173|gb|EFE09282.1| transcription-repair coupling factor [Citrobacter youngae ATCC
           29220]
          Length = 1148

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 121/310 (39%), Gaps = 36/310 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + +    Q  LG +TG+     +A++ E    P +++AP+   A +L+ E + F   + +
Sbjct: 9   LPAGASDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT--DQM 66

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
              ++ ++    +++ P  +    + S++ +     R             ++V   + + 
Sbjct: 67  VMNLADWETLPYDSFSPHQEIISSRLSTLYQLPAMQR-----------GVLIVPVNTLMQ 115

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +          + +K G  + +  L   L    Y+  D  +  G +   G  +++FP  
Sbjct: 116 RVCPHSYLHGHALVMKKGQRLSRDALREQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   T + +  V+ I +     +    PT  TA++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRLFDTDTQRTLEEVDAINLLPAHEF----PTDKTAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I    + +        IE +          EP P LF
Sbjct: 231 WRDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLF 273

Query: 463 EYIPEDSLLF 472
            Y P ++LL 
Sbjct: 274 SYFPANTLLV 283



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDNLV--VREAILREVLR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ A+ L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLFNDVENIQKTADRLAELVPEARIGIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|83645461|ref|YP_433896.1| transcription-repair coupling factor [Hahella chejuensis KCTC 2396]
 gi|83633504|gb|ABC29471.1| transcription-repair coupling factor [Hahella chejuensis KCTC 2396]
          Length = 1149

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 82/487 (16%), Positives = 158/487 (32%), Gaps = 62/487 (12%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G    + +A+ ++  +R  +V+ P+   A QL S  K F             +   P   
Sbjct: 22  GQSDAYILAQALKEQKRLLVVITPDMPSADQLESAVKFFLGD------AKKNESTPPILT 75

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMIVQ 296
           +P  +T      S ++ I   R     +L      +++  +S I   +   E   +  + 
Sbjct: 76  LPDWETLPYDTFSPHQDIISQRIQTLHNLPTCASGLLIVPLSTIMVRLAPKEFVQRSTLI 135

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L+ G  +      S L +  Y+  D     G F V G  ++IFP       +R+ +F  +
Sbjct: 136 LRKGQPLRIDSYRSELEQAGYRCVDTVYEHGEFAVRGSILDIFPM-GSKAPFRIDLFDEE 194

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           +E + +F P T +    V+ I +     +                 L    I+L K+   
Sbjct: 195 VETLRQFDPETQRSASQVDEISLLPAHEFP----------------LNEASIQLFKDN-F 237

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
            E      R    L+ +    +   +E Y              +L +Y+  D+   + + 
Sbjct: 238 YEKFPGASRNIPLLQDISRGIATPGLEYYLTLFF-----TETASLLDYVARDACFALYDG 292

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFR--LPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
                +    ++    R   L     R  LP   D      E +  L+         P +
Sbjct: 293 LH--EKALHFWKDLEQRYEDLRHDIQRPILPPA-DIYLRVEELFEGLKQF-------PRA 342

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ-GLRILLTVLTKR 593
               + +         P   +D   E         +    I+ A Q  G +I+L   +  
Sbjct: 343 QFSAKSEESDKPFAPLPHLALDAKKE---------NPLQAIDCAQQDTGYKIILCAESAG 393

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             + L +   E    +  + S    L   E             + +  L +G    E  +
Sbjct: 394 RQQALMDTFKEHGRPLTLLESWEACLNSNERWN----------ITVAELAKGFADNENQI 443

Query: 654 VAILDAD 660
           + + +AD
Sbjct: 444 LVVAEAD 450



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 13/165 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L    QG+    II         V+          + + +     +G 
Sbjct: 753 ILTLTATPIPRTLNLSFQGVRDLSIIATPPEKRLSVKTFVQEHNNSIIKEAVLREILRGG 812

Query: 584 RIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++      +  + K  +E L E + +  + V   H +++  E   ++ D    +F+VL+ 
Sbjct: 813 QVFFLHNEVNTINKAASE-LQEMVPDARVAVA--HGQMRERELERVMSDFYHKRFNVLMC 869

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
             ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +
Sbjct: 870 TTIIETGIDIPSANTIIIERADKFGLAQ----LHQLRGRVGRSHH 910



 Score = 38.5 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 5/146 (3%)

Query: 82  SSISMSEKQTREISEQTMTPSV-QALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITF 140
           + +        ++     + +  QA  ++  S   LL+       H  ++     +    
Sbjct: 535 AGLDDKLAPINKLGTDRWSAAKRQAAEKIKDSAAELLEIYAKRELHTGYACPPPDEHYRA 594

Query: 141 FQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPA 196
           F     +  + DQ  AI  +L+  +  R   +L+ G  G GKT      A +     R  
Sbjct: 595 FSAAFPFEETPDQATAINAVLQDMMKPRPMDRLVCGDVGFGKTEVAMRAAFLAAHAGRQV 654

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAV 222
            ++ P  +LA Q +  F++ F   A+
Sbjct: 655 AILTPTTLLAQQHFQSFQDRFADTAI 680


>gi|289667201|ref|ZP_06488276.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 1154

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 104/292 (35%), Gaps = 34/292 (11%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           + +   +++A+  EA   P +V+A +   A Q+ ++       +A            P  
Sbjct: 26  SPTALAWSIARAAEAHAGPLLVIARDNQSAHQIEADLHALRGEHAAL----------PVV 75

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIV 295
             P  +T    + S + +I   R +A   L      +V+  V   +  +  +        
Sbjct: 76  PFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTRGVVIVPVQTLLQQLAPLSYIVGGSF 135

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L +G  ++       L    Y+     +  G F V G  +++FP    D   RV +   
Sbjct: 136 DLTVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPM-GADTPLRVELLDE 194

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ I  F P + + +  V+ +K+           ++   +      L+ R         
Sbjct: 195 DIDSIRVFDPESQRSLDKVDAVKMLPGREVPMDDASVERVLAC----LRERFD------- 243

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                 ++ R +   + L++  +   IE Y      +       TLF+Y+ +
Sbjct: 244 ------VDTRRSALYQDLKSGLAPSGIEYYLPMFFAKT-----ATLFDYLDK 284



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I +   H ++   E   ++ D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRDLSELVPEARIGIA--HGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +S+
Sbjct: 890 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVVPDRRSM 930


>gi|218700384|ref|YP_002408013.1| transcription-repair coupling factor [Escherichia coli IAI39]
 gi|293409480|ref|ZP_06653056.1| transcription-repair coupling factor [Escherichia coli B354]
 gi|218370370|emb|CAR18173.1| transcription-repair coupling factor [Escherichia coli IAI39]
 gi|291469948|gb|EFF12432.1| transcription-repair coupling factor [Escherichia coli B354]
          Length = 1148

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|331662525|ref|ZP_08363448.1| transcription-repair coupling factor [Escherichia coli TA143]
 gi|331060947|gb|EGI32911.1| transcription-repair coupling factor [Escherichia coli TA143]
          Length = 1148

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|222032867|emb|CAP75606.1| Transcription-repair-coupling factor [Escherichia coli LF82]
 gi|312945676|gb|ADR26503.1| transcription-repair coupling factor [Escherichia coli O83:H1 str.
           NRG 857C]
          Length = 1148

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|191173073|ref|ZP_03034606.1| transcription-repair coupling factor [Escherichia coli F11]
 gi|190906618|gb|EDV66224.1| transcription-repair coupling factor [Escherichia coli F11]
          Length = 1148

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|325266091|ref|ZP_08132777.1| transcription-repair coupling factor [Kingella denitrificans ATCC
           33394]
 gi|324982729|gb|EGC18355.1| transcription-repair coupling factor [Kingella denitrificans ATCC
           33394]
          Length = 1258

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 76/423 (17%), Positives = 140/423 (33%), Gaps = 62/423 (14%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P IV+  +   A +L + ++ F P +    F+  ++    E + P  D   E        
Sbjct: 35  PKIVLTADSETALRLQTAWQFFRPQDN-ALFLPDWETLPYERFSPHQDLVSE-------- 85

Query: 255 IDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
               R S    L      ++ + VS  +  +            LK G +++  +L  +LV
Sbjct: 86  ----RLSVLWQLKNGAADVLFAPVSTAMQRLAPPSFLMGRTFWLKTGQTLDLDKLRENLV 141

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
           +  Y      +  G F V G  +++FP    D+ +R+ +F N+I+ I  F P T + +  
Sbjct: 142 EAGYAAVSNVVAAGEFAVRGGIVDLFPM-GADLPYRIDLFDNEIDSIKTFDPDTQRTLAP 200

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           V  I++     + T            +EE+                Q + +         
Sbjct: 201 VSEIRLLPAHEFPTDADAQKIFRNRFREEI------PSNPNEATVYQAVGK--------- 245

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL-FVDESHVTIPQISGMYRGDFH 492
                   +E Y          +    LF+YI E++++   D+ H    +     +    
Sbjct: 246 --GQFGAGVEYYLPLFFEDGCAD----LFDYIGENAIIVCTDDVHARAHRFWDEVKSRHA 299

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
                  Y    P  +   P +F       P       T    E               +
Sbjct: 300 MAQGDPSYPPLPPQSLYLLPDQFAGCLKRYPQVW----TQADAE---------------S 340

Query: 553 GLVDPPVEIRSARTQVED-VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           GL D  V       Q ++ +       A  G +ILL   +    E +T +L +    V+ 
Sbjct: 341 GLPDVAV-----NRQSDEPLAALARFQAAFGGKILLCAESAGRRETMTGFLKQHGFDVKP 395

Query: 612 MHS 614
           + S
Sbjct: 396 VSS 398



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 858  VLTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 914

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 915  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 972

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 973  LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1021

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1022 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1058

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1059 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1091


>gi|15677148|ref|NP_274301.1| transcription-repair coupling factor [Neisseria meningitidis MC58]
 gi|7226520|gb|AAF41657.1| transcription-repair coupling factor [Neisseria meningitidis MC58]
          Length = 1379

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 146/422 (34%), Gaps = 61/422 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L S
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKS 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFVDESHVTIPQISGMYRG 489
           + +        +E Y              TLF+YI ED+  + +D+ H      +  +  
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFVSLDDVHA----EANRFWS 292

Query: 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
           D   +  +A+     P               L P  + +SA   +  L+    ++ +   
Sbjct: 293 DVKSRYAMAQGDETYPP--------------LLPQYLYLSADVFAGRLKNYGQVLPDVSG 338

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +   L D  V       Q ++    + +       RILL   +    E +  +L +  ++
Sbjct: 339 KEYTLPDLAV-----NRQADEPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLK 393

Query: 609 VR 610
            +
Sbjct: 394 AK 395



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 984  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 1040

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 1041 RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 1098

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 1099 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1147

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1148 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1184

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1185 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1217


>gi|313201057|ref|YP_004039715.1| transcription-repair coupling factor [Methylovorus sp. MP688]
 gi|312440373|gb|ADQ84479.1| transcription-repair coupling factor [Methylovorus sp. MP688]
          Length = 1139

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 80/495 (16%), Positives = 159/495 (32%), Gaps = 75/495 (15%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQR-PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L  G+          ++ +  +R P +++  +   A +L  E   F    +V        
Sbjct: 19  LPTGLDSLALARLARELKQKPERTPLVILCASAFEAQRLLEEMPWFAADLSVHM------ 72

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                  +P  +T      S +  +   R +    + +    +++  VS         +Y
Sbjct: 73  -------MPDWETLPYDHFSPHPDLISERLATLYQISQNTCDVIIVPVSTALIRVPPNAY 125

Query: 291 -SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
            +     LK    ++   L +   +  Y      +  G F V G  +++FP     + +R
Sbjct: 126 LAAHTFMLKKNQRLDLDALRTQCAEAGYHHVSQVMSPGEFSVRGGLVDLFPMGSS-LPYR 184

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           + +F ++IE I  F   T + +  V  I++     +      ++   +  +E        
Sbjct: 185 LDLFDDEIESIRTFDVDTQRSVYPVSEIRLLPAREFPLDEAGISRFRQNFRE-------- 236

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E      RI  D+     +G    IE Y          E   T+ +Y+P  +
Sbjct: 237 ------TFEGDPSRSRIYKDVSKGIASG---GIEWYLPLFF-----EETATVLDYLPSSA 282

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD-NRPLRFEEWNCLRPTTIVV 528
           +L +  +     Q  G +R    R   L           D  RP        L+P  +++
Sbjct: 283 ILCMHGNIDHAAQ--GFWRDAQSRYRQL---------AHDPERP-------ILQPEVLLL 324

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
             T   +      G I       +GL    +E R A   +  + + I        RIL+ 
Sbjct: 325 -KTEDFFARTHVWGRIQLTTETASGLPALEIE-RRADHPLHKLQEFIKKYKG---RILIA 379

Query: 589 VLTKRMAEDLTEYLYERNIR---VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
             +    E + +   +  +        H             + + G   V++G+  L  G
Sbjct: 380 AESLGRRETMAQLFSDHQVPFSACGDGHGN--------SWEEFQQGDARVMLGVAALHGG 431

Query: 646 LDIPECGLVAILDAD 660
                     I +A+
Sbjct: 432 FVAD--KFCIITEAE 444



 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           M E L   L E  I +   H +++  E   ++RD    +F++L+   ++  G+D+P    
Sbjct: 822 MKEKLERILPEARIGIA--HGQLRERELEHVMRDFYQQRFNLLLCTTIIETGIDVPTANT 879

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           + +  AD  G  +    L Q  GR  R+ +           ++I
Sbjct: 880 IIMNRADMFGLAQ----LHQLRGRVGRSHHQAYAYLLTDPDRNI 919


>gi|218704525|ref|YP_002412044.1| transcription-repair coupling factor [Escherichia coli UMN026]
 gi|218431622|emb|CAR12501.1| transcription-repair coupling factor [Escherichia coli UMN026]
          Length = 1148

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 70/180 (38%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +           ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQAYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|320197559|gb|EFW72172.1| Transcription-repair coupling factor [Escherichia coli WV_060327]
          Length = 1148

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|306814036|ref|ZP_07448209.1| transcription-repair coupling factor [Escherichia coli NC101]
 gi|305852673|gb|EFM53121.1| transcription-repair coupling factor [Escherichia coli NC101]
          Length = 1148

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|312113596|ref|YP_004011192.1| transcription-repair coupling factor [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218725|gb|ADP70093.1| transcription-repair coupling factor [Rhodomicrobium vannielii ATCC
           17100]
          Length = 1249

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 86/529 (16%), Positives = 175/529 (33%), Gaps = 75/529 (14%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ------RPAIVMAPNKILAA 207
           P A+ +L       +      GV      F +A +   +       +  + +A +    A
Sbjct: 16  PTALDRLA----GGDGAIRASGVPEGYDAFLIAAIARRLPADTAFQQAVLHVARDDQRLA 71

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
           +L S+ + F P   V  F             P  D       S +  I+  R +    L 
Sbjct: 72  ELKSQLEFFAPGADVLSF-------------PAWDCVPYDRVSPDSDIEARRIATLARLA 118

Query: 268 ERNDC-----IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
                     ++ +  + +  +  + +  +   +L  G  V  ++++  L    + R   
Sbjct: 119 HAKGGKPAIIVLTTVNAALQRVPPLAAMKKSAARLAAGGRVSMEQVIVRLEGSGFMRTGT 178

Query: 323 GIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
            +  G + V G  ++++ P H      R+  FG+ +E I  F P+T +     + + +  
Sbjct: 179 VMEPGEYAVRGGILDLYVPGHA--RPARLDFFGDTLETIRTFDPVTQRTQATRDGVTLLP 236

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S   +    +           + R +EL   G+  +A           E +        
Sbjct: 237 ISEIPSGDAAVKM--------FRQRYVELFGPGKGDDA---------LYEAVSAGTRYPG 279

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE--SHVTIPQISGMYRGDFHRKATLAE 499
           +E++              +LF+Y+P ++++ +D         ++  +      R+  L +
Sbjct: 280 VEHWLPLFYDGM-----DSLFDYLP-NAVVTLDHLADDAAARRLETIADHYEARREGLEQ 333

Query: 500 YGFRLPSCMDNRP----LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
             F  P     +P    L  EEW+       V    P      +    I  +  +     
Sbjct: 334 RSFGAPPYKPLKPEALYLAAEEWDAKLGERKVRRFEPFPQPDAKAVVQIDFKGKQGRSFA 393

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
               E  S+   +  V D I +    G R ++   T    E L   L             
Sbjct: 394 LERSE--SSDKLIPAVADHIRVMQSLGKRAVIACWTNGARERLGNMLSTH---------- 441

Query: 616 VKTLERIEIIRDLR-LGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +  +E++  I ++R   K  V   +  +  G + P+  L  I + D  G
Sbjct: 442 ISRIEKVANIAEVRKADKSAVSFALLGIESGYETPD--LAIIAEQDILG 488



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 94/261 (36%), Gaps = 37/261 (14%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
              + ++ATP    L+     + E  +  T  VD    +R+  T  +   + + +     +
Sbjct: 782  HVLTLTATPIPRTLQLALTGVREMSVIATPPVDRLA-VRTFITPFDPVTLREALLRERYR 840

Query: 582  GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V      +++  +L E+   +R+M  H ++   +  +I+      +FDVL+  
Sbjct: 841  GGQSFYVVPRISDLDEVATFLREQVPEIRFMQAHGQMAPTQLEDIMSAFYDKEFDVLLST 900

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      ++          
Sbjct: 901  TIVESGLDIPNANTLIVHRADMFGLAQ----LYQLRGRVGRSKTRAYAMFTIPPNGK--- 953

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                                I PQ+ K  K++  +D +       ++        +L   
Sbjct: 954  --------------------ITPQAEKRLKVLHSLDSLGAGFTLASHDLDLRGAGNLLGD 993

Query: 759  KGKAHLK----SLRKQMHLAA 775
            +   H+K     L + M   A
Sbjct: 994  EQSGHIKEVGYELYQSMLEEA 1014


>gi|254508504|ref|ZP_05120622.1| transcription-repair coupling factor [Vibrio parahaemolyticus 16]
 gi|219548529|gb|EED25536.1| transcription-repair coupling factor [Vibrio parahaemolyticus 16]
          Length = 1153

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/314 (18%), Positives = 119/314 (37%), Gaps = 39/314 (12%)

Query: 160 LLKGIHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           L     + +K  +  G + G+     +A++ +      ++  P+   A +L  E    F 
Sbjct: 9   LANATGAGDKKHV--GNLQGASLALAIAELADQHTSHTLLAVPDPQTALKLLQEI-EQFT 65

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
              V  F  + +    + + P  +        I+++I R+    T S        +V   
Sbjct: 66  DQDVALFPDW-ETLPYDNFSPHQEI-------ISDRIARLYQLPTLS----RGITIVPVS 113

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           + +      +   Q  + +K+GD    ++L   L K  Y+  D     G +   G  +++
Sbjct: 114 TLLQRQSPRDYLMQHTLMVKVGDLFSLEKLRMQLEKSGYRNVDQVFGPGEYASRGSILDL 173

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP    D  +R+  F ++I+ I  F P   + I +V+ I++     +    PT  +A++ 
Sbjct: 174 FPMGSND-PFRIDFFDDEIDTIRTFDPENQRSIDDVQEIRLLPAHEF----PTTESAIED 228

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
            +   + R           EA+R  + +      +        IE +          E  
Sbjct: 229 FRIRWRQR----------FEARREPESVYM---QVSKGTWPAGIEYWQPLFF-----EQT 270

Query: 459 PTLFEYIPEDSLLF 472
            TLF+YI +DS + 
Sbjct: 271 ETLFDYIADDSQII 284



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 14/186 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q +D  + + +     +G
Sbjct: 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSDDAVIREAVLREIMRG 812

Query: 583 LRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++          E    DL + + E  + V   H +++  E   I+ D    +F++LV 
Sbjct: 813 GQVYFLHNQVETIEKVAADLEKLIPEARVTVA--HGQMRERELERIMNDFYHQRFNLLVC 870

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K++ 
Sbjct: 871 TTIIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAMT 926

Query: 699 L-AIDE 703
             AI  
Sbjct: 927 KDAIKR 932


>gi|257791044|ref|YP_003181650.1| transcription-repair coupling factor [Eggerthella lenta DSM 2243]
 gi|257474941|gb|ACV55261.1| transcription-repair coupling factor [Eggerthella lenta DSM 2243]
          Length = 1161

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 98/516 (18%), Positives = 176/516 (34%), Gaps = 79/516 (15%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           LGV  S + F +A       +P +V+   +  A         +     V  F    DY  
Sbjct: 31  LGVASSARPFLVAARFAHRPQPTLVVVAGEDAAVAFSRSLAAYLGDERVMRFPERSDY-- 88

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQ 292
              +VP+         S   Q+ R R  A  +L    + +VV+S   +   +    S   
Sbjct: 89  --PFVPKP--------SDPAQVAR-RMEAVHALASGREVVVVASARALVRALPPAGSDVH 137

Query: 293 MIVQLKIGDSV------------EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           + V L  G  +            E ++   +L ++ Y+        GTF V G +I++FP
Sbjct: 138 VPVALSAGRELAAMPGAQAASVTEFEDFAHALEERGYRNTGELDGPGTFAVRGGTIDVFP 197

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
            +L     R+  FG+++EEI    P TGQ I+ +  + IY    +   +  L  A     
Sbjct: 198 GNL-VYPVRLDFFGDELEEIRRIVPTTGQTIQALPDVSIYPVVEFSCSKRGLARA----- 251

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              + +L        +L            LE L+        +    YL          T
Sbjct: 252 ---RQKLERPAATNPVLRDV---------LEKLDGGLRFDGSDMLLPYLY-----ATTST 294

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           L +Y+   +L  + E       +S  Y     R       G  +P               
Sbjct: 295 LGDYVRPGALSVLLEPRSLFDDMSHAYDDAAGRAK-----GSSIP--------------- 334

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR--TQVEDVYDEINLA 578
                  + A PG+    + Q      I+R  G VD  + ++        + ++  +   
Sbjct: 335 ----VDGLYAEPGAVSFGEGQRATYVSIMRVGGHVDDELPVKRVEVAGHPDKLFGRLRSL 390

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVR-YMHSEVKT-LERIEIIRDLRLGKFDVL 636
                 ++ +    R  +D+     +  + ++  + +E           R LR G  +V+
Sbjct: 391 VDTDYTVVFSASNFRARQDMKLAFVDHGLPIQETLDAEEDADELEGIAKRRLRRGVVNVV 450

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
                L  G+ IP+  L  +  +D +G   S+ S  
Sbjct: 451 DVDVPL--GMIIPKAKLAIVSLSDTQGASTSRPSRH 484



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 22/192 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    ++     + +     + ++ PP E R     V     + V   I    
Sbjct: 768 VLTLSATPIPRTMQMSLSGVRDM----SLILTPPDERRPVEVHVGEWDPDVVSGAIRREL 823

Query: 580 QQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +G ++       R  E+    +T    E  + V   H ++   +   ++ D   G+ DV
Sbjct: 824 ARGGQVYYVSNRVRSMEEAVRRVTAAAGEARVGVA--HGQMSKEQLERVMEDFSAGELDV 881

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  G+D P    + I D+ + G  +    + Q  GR  R   S    YA  +  
Sbjct: 882 LVATTIIESGIDNPHTNTLIIEDSQRYGLAQ----MYQLKGRVGR---SCTQAYAYFMFP 934

Query: 696 SIQLAIDETTRR 707
                 +E   R
Sbjct: 935 EHMELTEEAAAR 946



 Score = 38.2 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 22/165 (13%)

Query: 146 DYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            Y  + DQ AAIA +   + S +   +L+ G  G GKT      A       +  +V+ P
Sbjct: 615 PYQETPDQLAAIADVKADMQSAKPMDRLVCGDVGFGKTEVALRAAFKATQDSKQVMVLCP 674

Query: 202 NKILAAQLYSEFKNFFPH--NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
             ILA Q Y+ FK         VE    +    Q  A +              ++ D   
Sbjct: 675 TTILAQQHYTNFKERCEPFGVRVEVLSRFRTPAQQAAAL-----------KGFQEGDVDV 723

Query: 260 HSATRSLLERND-----CIVVSSVSCIYGIGSVESYSQMIVQLKI 299
              T  LL R+       +V+      +G+G  E    +   + +
Sbjct: 724 LVGTHRLLSRDVNPHDLGLVIIDEEQRFGVGHKEQMKNLRESIDV 768


>gi|123966148|ref|YP_001011229.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9515]
 gi|123200514|gb|ABM72122.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9515]
          Length = 1175

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 107/542 (19%), Positives = 198/542 (36%), Gaps = 82/542 (15%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I +L+K I    K   ++G +   K+  +  + +   +  I+++PN+ +A + Y  F + 
Sbjct: 16  ITELVKRIEKN-KELNIIGSSRYAKSIIINSLAKKENKNIILVSPNEEIAYKWYGYFNSI 74

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              N + Y  S    Y   +     +T   + S I++ I         +  E  + I+ +
Sbjct: 75  GNRNILYYPPSKNLPYG--SINKSKETEYSQLSVISKLI--------NNDKEEKNIIITT 124

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
             S    +     + Q I+ L  G ++E KEL S LV   Y ++++    G++   G+ I
Sbjct: 125 ERSLQPHLIKKNIFKQKIITLNKGLAIEIKELTSQLVSLGYNKENLTSQEGSWSRRGEII 184

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +I+P + E +  R+  F N I++I E+ P+T + + ++  ++I    +    R       
Sbjct: 185 DIYPVNNE-LPIRIEFFDNIIDKIREYDPVTQRTLDSINKVEIVQVGYNSLIREK----- 238

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
                     L  L  EG             ++ E + T        N  RYL      E
Sbjct: 239 ----------LELLSDEG------------VFNSEEITTKN------NLDRYLGIIE--E 268

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA-EYGFRLPSCMDNRPLR- 514
            P  L  YI EDS++ +DE        +  Y    +       E    L S   N  ++ 
Sbjct: 269 YPSNLINYINEDSIIVIDEIDDCTKFANNWYIESVNNFDHFKDEITQNLRSNNINIKVKP 328

Query: 515 --FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
              E++      T         +E E  +  +  + +           I S+   +  + 
Sbjct: 329 NLHEKFE-YILKTFSDFIVINLYEFE-SKRNLDNRFLLSDKR------INSSSKNIGKLS 380

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            EIN       ++ +          L   L+E +    Y+          E   DL    
Sbjct: 381 KEINKFILNKDKVWILSAQPLRTRSL---LFEHDCNTNYL----------EKPNDLDNAY 427

Query: 633 FDVLVGINLL--------REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
             + +   ++         EG  +P   ++ I   DKE F +        I R  R+VNS
Sbjct: 428 KLIDIPTPVIIKNKNNYEIEGFYLPIWKIILI--TDKELFSQQALFNNVFIRRRKRSVNS 485

Query: 685 KV 686
            +
Sbjct: 486 NI 487



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 74/194 (38%), Gaps = 15/194 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-VEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +  T       ++   +   ++ +   I+    +G 
Sbjct: 765 VLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAISQELDRGG 824

Query: 584 RILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +I   +      +     LT    +    V   H ++  ++    +     G+ D+++  
Sbjct: 825 QIFYVLPRISDIDQAVNKLTNMFNDLKFIVA--HGQMNEIDLENAMIAFNNGEVDLMICT 882

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP+   + I D+ K G L     L   +GR+    ++ +             
Sbjct: 883 TIIESGLDIPKVNTIIIEDSHKFG-LSQLYQLRGRVGRSGIQAHAWLFY-------PNLN 934

Query: 700 AIDETTRRREKQLE 713
            I+E +++R K ++
Sbjct: 935 NINEASKQRLKAIK 948


>gi|307308795|ref|ZP_07588491.1| transcription-repair coupling factor [Sinorhizobium meliloti
           BL225C]
 gi|307317268|ref|ZP_07596709.1| transcription-repair coupling factor [Sinorhizobium meliloti AK83]
 gi|306897356|gb|EFN28101.1| transcription-repair coupling factor [Sinorhizobium meliloti AK83]
 gi|306900801|gb|EFN31412.1| transcription-repair coupling factor [Sinorhizobium meliloti
           BL225C]
          Length = 1169

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 84/543 (15%), Positives = 169/543 (31%), Gaps = 82/543 (15%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           I +  +   +  V    +   +A++      P   +  +    A L        P   V 
Sbjct: 10  ILAATREITIGPVPTGAEALVLAEL-ARAGAPVAYILSDGQKVADLEQVLGFVAPDIPVL 68

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
               + D    +   P  DT   + ++++  I   R             ++V+  + +  
Sbjct: 69  TLPGW-DCLPYDRVSPSADTSARRLAALSALIAHRRKP-------HPAIVLVTINAALQR 120

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           I   +    +    + G+ +   +L + L +  ++R       G F V G  ++++    
Sbjct: 121 ISPQDVIESLAFTARPGNQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVPGS 180

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
            +   R+  FG+ +E I  F P + + I  V ++ +   S       T++          
Sbjct: 181 GE-PLRLDFFGDTLEAIRSFDPASQRTIGQVRSLDLNPMSEVSLTPETISHF-------- 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
             R   L   G       L Q ++              +E++      R       T+F+
Sbjct: 232 --RKQYLSLFGAATRDDALYQAVS-------EGRRYAGMEHWLPLFYDRLE-----TVFD 277

Query: 464 YIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM--------------- 508
           Y+ +   +  D                   K  L  Y  RL S                 
Sbjct: 278 YL-DGFRIVTD--------HLAREAAAERSKLVLDYYDARLASASPGKSQVTQGTPYKPV 328

Query: 509 --DNRPLRFEEWNCLRPTTIVVSATPGSW---ELEQCQGIIVEQIIR---PTGLVDPPVE 560
             D   L  + +         V  +P +    E  Q   I   Q +R   P G  D    
Sbjct: 329 PPDMLYLTAKGFGEALNDLNAVRLSPFTEHEGEARQVVNIEARQGLRWAKPAGEADNDGT 388

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
                   +     I     +G +++++  T+   + L + L E  +        ++ ++
Sbjct: 389 ---RTNVFDQAVKHIAEKRAKGAKVIVSGWTEGSLDRLLQVLAEHGLA------NIRPVK 439

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            +  I  L+ G+    V    L  G +  +  LV I + D  G       L++   R  R
Sbjct: 440 ALSDIGSLKPGEAASAVLS--LEAGFETGD--LVVIGEQDILG-----DRLVRRSKRRKR 490

Query: 681 NVN 683
             +
Sbjct: 491 GAD 493



 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 98/268 (36%), Gaps = 36/268 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 773  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFISPFDALVIRETLMREHYR 831

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +            ++ ++L      ++V   H ++   E  +I+     G++DVL+  
Sbjct: 832  GGQSFYVCPRVSDLPEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLST 891

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLD+P    + +  AD  G  +    L Q  GR  R+      L+   + K++  
Sbjct: 892  TIVESGLDVPTANTLIVHRADMFGLAQ----LYQLRGRVGRSKVRAFALFTLPVNKTLTG 947

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
                   RR K                  +++ +D +       ++        +L  ++
Sbjct: 948  ----PAERRLK------------------VLQSLDTLGAGFQLASHDLDIRGAGNLLGEE 985

Query: 760  GKAHLK----SLRKQM-HLAADNLNFEE 782
               H+K     L +QM   A   L  EE
Sbjct: 986  QSGHIKEVGFELYQQMLEEAVAELKGEE 1013


>gi|15965404|ref|NP_385757.1| transcription-repair coupling factor (TRCF) protein [Sinorhizobium
           meliloti 1021]
 gi|15074585|emb|CAC46230.1| Probable transcription-repair coupling factor (TRCF) protein
           [Sinorhizobium meliloti 1021]
          Length = 1171

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 84/543 (15%), Positives = 169/543 (31%), Gaps = 82/543 (15%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           I +  +   +  V    +   +A++      P   +  +    A L        P   V 
Sbjct: 12  ILAATREITIGPVPTGAEALVLAEL-ARAGAPVAYILSDGQKVADLEQVLGFVAPDIPVL 70

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
               + D    +   P  DT   + ++++  I   R             ++V+  + +  
Sbjct: 71  TLPGW-DCLPYDRVSPSADTSARRLAALSALIAHRRKP-------HPAIVLVTINAALQR 122

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           I   +    +    + G+ +   +L + L +  ++R       G F V G  ++++    
Sbjct: 123 ISPQDVIESLAFTARPGNQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVPGS 182

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
            +   R+  FG+ +E I  F P + + I  V ++ +   S       T++          
Sbjct: 183 GE-PLRLDFFGDTLEAIRSFDPASQRTIGQVRSLDLNPMSEVSLTPETISHF-------- 233

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
             R   L   G       L Q ++              +E++      R       T+F+
Sbjct: 234 --RKQYLSLFGAATRDDALYQAVS-------EGRRYAGMEHWLPLFYDRLE-----TVFD 279

Query: 464 YIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM--------------- 508
           Y+ +   +  D                   K  L  Y  RL S                 
Sbjct: 280 YL-DGFRIVTD--------HLAREAAAERSKLVLDYYDARLASASPGKSQVTQGTPYKPV 330

Query: 509 --DNRPLRFEEWNCLRPTTIVVSATPGSW---ELEQCQGIIVEQIIR---PTGLVDPPVE 560
             D   L  + +         V  +P +    E  Q   I   Q +R   P G  D    
Sbjct: 331 PPDMLYLTAKGFGEALNDLNAVRLSPFTEHEGEARQVVNIEARQGLRWAKPAGEADNDGT 390

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
                   +     I     +G +++++  T+   + L + L E  +        ++ ++
Sbjct: 391 ---RTNVFDQAVKHIAEKRAKGAKVIVSGWTEGSLDRLLQVLAEHGLA------NIRPVK 441

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            +  I  L+ G+    V    L  G +  +  LV I + D  G       L++   R  R
Sbjct: 442 ALSDIGSLKPGEAASAVLS--LEAGFETGD--LVVIGEQDILG-----DRLVRRSKRRKR 492

Query: 681 NVN 683
             +
Sbjct: 493 GAD 495



 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 98/268 (36%), Gaps = 36/268 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 775  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFISPFDALVIRETLMREHYR 833

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +            ++ ++L      ++V   H ++   E  +I+     G++DVL+  
Sbjct: 834  GGQSFYVCPRVSDLPEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLST 893

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLD+P    + +  AD  G  +    L Q  GR  R+      L+   + K++  
Sbjct: 894  TIVESGLDVPTANTLIVHRADMFGLAQ----LYQLRGRVGRSKVRAFALFTLPVNKTLTG 949

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
                   RR K                  +++ +D +       ++        +L  ++
Sbjct: 950  ----PAERRLK------------------VLQSLDTLGAGFQLASHDLDIRGAGNLLGEE 987

Query: 760  GKAHLK----SLRKQM-HLAADNLNFEE 782
               H+K     L +QM   A   L  EE
Sbjct: 988  QSGHIKEVGFELYQQMLEEAVAELKGEE 1015


>gi|90413103|ref|ZP_01221100.1| putative transcription-repair coupling factor [Photobacterium
           profundum 3TCK]
 gi|90325946|gb|EAS42392.1| putative transcription-repair coupling factor [Photobacterium
           profundum 3TCK]
          Length = 1151

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 120/297 (40%), Gaps = 36/297 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           ++G+    ++A++  A Q P + + P+   A +L  E  + F    V  F  + +    +
Sbjct: 24  LSGAALALSVAELSHAHQGPVLAVVPDTQTALRLQPEI-SQFTSVEVNVFPDW-ETLPYD 81

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D         ++++ R+    T+S    +  I+V   + +  +   E   +  +
Sbjct: 82  NFSPHQDI-------TSDRLARLYKLPTQS----DGIILVPISTLLQRLTPREYLRKHAL 130

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            ++ GD +   +L   L    Y+  D  +  G +   G  +++FP    +  +R+  F +
Sbjct: 131 IVRNGDRLSLDKLRLQLESSGYRHADQVMEHGEYASRGSLLDLFPM-GSNQPYRIDFFDD 189

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +++ I +F P   +    +++I +     +    PT   A++  +   + R     +   
Sbjct: 190 EVDSIRQFDPENQRSTGEIDSINLLPAHEF----PTDEIAIENFRMRWRERFEARREPES 245

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           +   Q++ +R                IE +          E   TLF+Y+P+++LL 
Sbjct: 246 I--YQQVSKRT-----------WPAGIEYWQPLFF-----ENTETLFDYLPDETLLV 284



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 85/244 (34%), Gaps = 13/244 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     +  V + +     +
Sbjct: 755 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRERDDAI--VREAVLREITR 812

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E  TE L +     R  + H +++  E  +++ D    +F++LV  
Sbjct: 813 GGQVYFLHNEVDSIEKTTEELAKLIPEARITFAHGQMRERELEKVMGDFYHQRFNLLVCT 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + +  AD  G  +    L Q  GR  R+ +           K +  
Sbjct: 873 TIIETGIDIPTANTIIMNRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHKKRMTK 928

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             D   R    +   +        +   +I    + +  E +        +  + + ++ 
Sbjct: 929 --DAVKRLEAIESLEDLGAGFTLATHDLEIRGAGELLGDEQSGQIQSIGFSLFMEMLEQA 986

Query: 760 GKAH 763
            +A 
Sbjct: 987 VEAL 990


>gi|261824923|pdb|3HJH|A Chain A, A Rigid N-Terminal Clamp Restrains The Motor Domains Of
           The Bacterial Transcription-Repair Coupling Factor
          Length = 483

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283


>gi|332089282|gb|EGI94388.1| transcription-repair coupling factor [Shigella boydii 5216-82]
          Length = 1148

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 119/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+  T  +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACTTLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|325134475|gb|EGC57120.1| transcription-repair coupling factor [Neisseria meningitidis
           M13399]
          Length = 1305

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 146/422 (34%), Gaps = 61/422 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L S
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKS 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFVDESHVTIPQISGMYRG 489
           + +        +E Y              TLF+YI ED+  + +D+ H      +  +  
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFVSLDDVHA----EANRFWS 292

Query: 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
           D   +  +A+     P               L P  + +SA   +  L+    ++ +   
Sbjct: 293 DVKSRYAMAQGDETYPP--------------LLPQYLYLSADVFAGRLKNYGQVLPDVSG 338

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +   L D  V       Q ++    + +       RILL   +    E +  +L +  ++
Sbjct: 339 KEYTLPDLAV-----NRQADEPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLK 393

Query: 609 VR 610
            +
Sbjct: 394 AK 395



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 910  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 966

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 967  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 1024

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 1025 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1073

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1074 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1110

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1111 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1143


>gi|302560241|ref|ZP_07312583.1| transcription-repair coupling factor [Streptomyces griseoflavus
           Tu4000]
 gi|302477859|gb|EFL40952.1| transcription-repair coupling factor [Streptomyces griseoflavus
           Tu4000]
          Length = 1187

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 86/545 (15%), Positives = 161/545 (29%), Gaps = 75/545 (13%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
              ++ + L    + + FT+A +     RP + +      A  L +  ++  P   V  +
Sbjct: 35  DGNRMHIDLVGPPAARPFTVAALARDTGRPVLAVTATGREAEDLAAALRSLLPPEGVVEY 94

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI---- 281
            S+ +    E   PR+DT   + +     + R+ H            +VV+ V  +    
Sbjct: 95  PSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPRPDDPETGPVSVVVAPVRSVLQPQ 149

Query: 282 -YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
             G+G +E        L+ G + +    + +L    Y R ++   RG F V G  +++FP
Sbjct: 150 VKGLGDLEPV-----SLRTGGTADLGATVEALAAAAYARVELVEKRGEFAVRGGILDVFP 204

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTPRPTLNTAMKYI 399
              E+   RV  +G+D+EEI  F     + +   E  +        +        A    
Sbjct: 205 P-TEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELLLTDDVRERA---- 259

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
              L     EL +                 L  +    + + +E+ +  L          
Sbjct: 260 -RALAEDHPELGE----------------LLGKIAEGIAVEGMESLAPVLVDDMEL---- 298

Query: 460 TLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYGFRLP---SCMDNRPL 513
            L + +PE ++  V +          +    +            G   P          L
Sbjct: 299 -LLDVLPEGAMAVVCDPERVRTRASDLVATSQEFLQASWAATAGGGEAPIDVDAASLWSL 357

Query: 514 RFEEWNCLRPTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
                       +  S +P     EL        +      G+  P       R      
Sbjct: 358 AAVRDRARELDMMWWSVSPFAADEEL--------DSDTLKLGMHAPET----YRGDTARA 405

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             +       G R +        A    E L    I  R +  ++  +            
Sbjct: 406 LADTKGWLADGWRTVFVTEGHGPAARTVEVLGGEGIAAR-LDPDLGEIT----------- 453

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
              V V    +  G   P  GL  + + D  G   S     +   R  + ++   +   D
Sbjct: 454 PSVVHVSCGCIDHGFVDPALGLAVLTETDLTGQKASGREGARMPARRRKTIDPLTLEAGD 513

Query: 692 TITKS 696
            I   
Sbjct: 514 HIVHE 518


>gi|300868792|ref|ZP_07113400.1| Transcription-repair-coupling factor [Oscillatoria sp. PCC 6506]
 gi|300333202|emb|CBN58592.1| Transcription-repair-coupling factor [Oscillatoria sp. PCC 6506]
          Length = 1226

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 86/559 (15%), Positives = 176/559 (31%), Gaps = 97/559 (17%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
           A+LL  +  R +   L GV    K  T++ + +   R  +V+A     A +  S+ +   
Sbjct: 17  AELLTQLK-RHRCLQLSGVARLPKGLTVSALAQQEGRNLLVVAATLEEAGRWASQLETMG 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI---------------------- 255
              AV  + +        +Y  +++    +   + + +                      
Sbjct: 76  WQ-AVHCYPTSEASPYEVSYSEQSEMTWGQMQVLADLLSGELGALEQGGGGAEGQGGGGA 134

Query: 256 -----------------DRMRHSATRSLL---------ERNDCIVVSSVSCIYG-IGSVE 288
                            +R+  S + S L               +V++   +   +  V 
Sbjct: 135 EGQGSGGAEGQGSGGAEERVPSSISPSPLLPRSPAPSRSSPSIAIVATERALQPHLPPVL 194

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           ++    ++LK G S + + +   L    Y R  +  + G +   GD ++++P   E +  
Sbjct: 195 AFKPFCLKLKRGMSWDSRAVDLKLAMMGYDRVSLVEMEGQWSRRGDIVDVYPVAAE-LPV 253

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FG+++E++ EF P T + +  +  + +                   I   L+    
Sbjct: 254 RLEWFGDELEQMREFDPSTQRSLDKINQLVLTPTDFSPI-----------IAAALQASGE 302

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
              +     E ++L  ++                    R L G+   E P  L +Y+PE+
Sbjct: 303 GEGEGEGEGEGEKLSSKVP-------------------RRLLGKAF-EQPACLLDYLPEN 342

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN--CLRPTTI 526
           +L+ +DE           +           E    LP    +                T 
Sbjct: 343 TLVAIDEPGQCQAHSDRWFEVAQEHWRIENEN-LELPKIHRSFADSLANVEVFDRISLTE 401

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
           +              G   +Q      L   PV +     Q   + + +     +G  I 
Sbjct: 402 LAEDASAQKSKTPSVGSATKQSQSSINLASRPVPVMP--HQYAKLAEMVRQERDRGFSIF 459

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV-LVGINLLR-E 644
           L       +  L   L E +   +++ +    L     I  L+     + L    +   E
Sbjct: 460 LVSAQPSRSVSL---LSEHDCPSQFIPNPRDYL----AIDKLQAQHLPIALKYSGVAELE 512

Query: 645 GLDIPECGLVAILDADKEG 663
           G  +P   LV + D +  G
Sbjct: 513 GFILPTFRLVVVTDREFYG 531



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 71/196 (36%), Gaps = 19/196 (9%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
             + ++ATP    L      I E  I  T    PP   R  +T +     E V   I    
Sbjct: 830  VLTLTATPIPRTLYMSLSGIREMSIIAT----PPPTRRPIQTHLAAYDPEVVRTAIRQEL 885

Query: 580  QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +G ++   V      +DL   L       ++   H ++   E   I+       FD+LV
Sbjct: 886  DRGGQVFYVVPRIEGIDDLAAQLGVMVPGAKIAIAHGQMDASELEAIMLAFSAADFDILV 945

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  GLDIP    + I DA + G  +    L   +GRA    ++ +         + 
Sbjct: 946  CTTIIESGLDIPRVNTILIEDAQRFGLAQ-LYQLRGRVGRAGVQAHAWLFY------PNQ 998

Query: 698  QLAIDETTRR-REKQL 712
                DE  +R R  Q 
Sbjct: 999  NRLTDEARQRLRAIQE 1014



 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           T+LT++    L E      I V  ++      ER E+ R L  G+ DV+VG   +L +G+
Sbjct: 738 TILTQQHYHTLKERFAPYPIEVGLLNRFRTETERRELQRRLASGELDVVVGTQSILSKGV 797

Query: 647 DIPECGLVAILDADKEG 663
              + GL+ + +  + G
Sbjct: 798 KFKDLGLMVVDEEQRFG 814


>gi|162450905|ref|YP_001613272.1| transcription-repair coupling factor [Sorangium cellulosum 'So ce
           56']
 gi|161161487|emb|CAN92792.1| transcription-repair coupling factor [Sorangium cellulosum 'So ce
           56']
          Length = 1271

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/522 (13%), Positives = 165/522 (31%), Gaps = 68/522 (13%)

Query: 173 LLGVTGSGKTFTMAKVIEAM-QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           + G  GS     + +++ A+  R  I + P+   A  L ++          +   +    
Sbjct: 88  VTGSAGSAGALVIRRLVAAVAGRRLIALTPDVDSARALAADTSFLLVDRDADDAEAAGST 147

Query: 232 -------YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
                  Y P    P  D   ++  +      R+       +      +V    + I  +
Sbjct: 148 TFGRVLLYLPNEASPYADVNPDRRGAQ----TRLATLFHLGMDLPWSVLVCPITALIRKV 203

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
            S +  ++    +     +++  L + L    Y R  +    GTF V G  ++++ +   
Sbjct: 204 VSRDEITEHAELVIAEQEMDRDALSARLGASGYVRSPLVEDPGTFAVRGALLDVW-APSA 262

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           ++  R+  +G+ +  I  F P   + + +V+ + I      +     +  A + ++    
Sbjct: 263 ELPVRIDFYGDIVASIKTFNPDDQRTVADVKEVWIPPAREAILTPANVERARQRVRAACD 322

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
             +I+                    ++ + +  +    E Y              +   Y
Sbjct: 323 --VIDFPSTKA-----------RALVDDVASGRAFFGAEGYLPAFIDL------ASFTSY 363

Query: 465 IPEDSLLFVDESHVT---IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
           +P+D+L+ +++       +    G    D   K    E  F L S  ++           
Sbjct: 364 LPDDALILLEDPSSVTAAVRNELGRAGADRSHKDR--EPHFPLASFYEDEAHVASWLGAR 421

Query: 522 RPTTIVVSATPGSWELEQC---QGIIVEQI----IRPTGLVDPPVEI----RSARTQVED 570
               +  +   G+ E         ++ E +     R    ++  ++     R     ++ 
Sbjct: 422 AVLALHRTGVEGAAENRNSLERFEVVPEDVPSLATRDQSDLERAIKTARASRGKHGALDP 481

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV---------RYMHSEVKTLER 621
           +   +    + GLR+L+    +   E L   L  R++RV          +         R
Sbjct: 482 LVRRVVAWQEAGLRVLIAARAQTQVERLVALLRHRDVRVKANLGPFDPAFFDGSSSASPR 541

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                         LV    L  G+  P  GL  + + +  G
Sbjct: 542 DTA-----------LVVTGSLARGVIAPAEGLALVTEEEIFG 572



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 70/193 (36%), Gaps = 13/193 (6%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
             + +SATP    L+     + +  I  T  VD    IR+  T+ ++  + + +     +G
Sbjct: 873  VLTLSATPIPRTLQMAVSGLRDMSIITTPPVDRRA-IRTVVTRHDEAVLREAVLRELGRG 931

Query: 583  LRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
             ++           +    L E     R    H ++      + + D   G++DVL    
Sbjct: 932  GQVFYVYNRVEGLYERAARLAELVPSARICVAHGQMSEQSLEQAMLDFVEGRYDVLCATA 991

Query: 641  LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI--- 697
            ++  GLDIP    + I  AD  G  +    L Q  GR  R+              ++   
Sbjct: 992  IIESGLDIPRANTILIDRADMFGLSQ----LYQLRGRVGRSKERAYCYLIVPPPNAMTDE 1047

Query: 698  -QLAIDETTRRRE 709
             +  I+   R  E
Sbjct: 1048 ARARIEALERHTE 1060



 Score = 45.1 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 21/164 (12%)

Query: 56  HRKNAAKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNP 115
           +R N  ++    +      +   Q+ +       +T+   E+++      L RL      
Sbjct: 647 YRLNQIQKFSGGEGTPKLDRLGGQTFA-------KTKARVEKSVRKMADELLRLYAERR- 698

Query: 116 LLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLL 174
                       +  +     D   F+    +  + DQ  AI ++   + S     +L+ 
Sbjct: 699 ---------AATAEPVPPPDDDYRAFEATFPFDETPDQARAITEVTADLESGRPMDRLVC 749

Query: 175 GVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           G  G GKT      A       R   V+ P  +LA Q Y  F++
Sbjct: 750 GDVGFGKTEVAIRAAFRAANAGRQVAVLCPTTVLAQQHYLSFRS 793


>gi|325140492|gb|EGC63013.1| transcription-repair coupling factor [Neisseria meningitidis CU385]
          Length = 1305

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 146/422 (34%), Gaps = 61/422 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L S
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKS 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFVDESHVTIPQISGMYRG 489
           + +        +E Y              TLF+YI ED+  + +D+ H      +  +  
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFVSLDDVHA----EANRFWS 292

Query: 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
           D   +  +A+     P               L P  + +SA   +  L+    ++ +   
Sbjct: 293 DVKSRYAMAQGDETYPP--------------LLPQYLYLSADVFAGRLKNYGQVLPDVSG 338

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +   L D  V       Q ++    + +       RILL   +    E +  +L +  ++
Sbjct: 339 KEYTLPDLAV-----NRQADEPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLK 393

Query: 609 VR 610
            +
Sbjct: 394 AK 395



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 910  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 966

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 967  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 1024

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 1025 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1073

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1074 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1110

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1111 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1143


>gi|28197977|ref|NP_778291.1| transcription-repair coupling factor [Xylella fastidiosa Temecula1]
 gi|182680603|ref|YP_001828763.1| transcription-repair coupling factor [Xylella fastidiosa M23]
 gi|28056037|gb|AAO27940.1| transcription-repair coupling factor [Xylella fastidiosa Temecula1]
 gi|182630713|gb|ACB91489.1| transcription-repair coupling factor [Xylella fastidiosa M23]
          Length = 1195

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 107/325 (32%), Gaps = 36/325 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           V+ +   + +A   +A + P +++  +   A Q+  + +    H +            P 
Sbjct: 25  VSPTALAWHIACAAQAHRGPLLLVTHDNHSAHQIEVDLQTLLAHCSGL----------PV 74

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMI 294
              P  +T    + S +  I   R +    L      IVV  V  +   +  +       
Sbjct: 75  IGFPDWETLPYDQFSPDPNIVSQRLATLHRLPSLARGIVVVPVQTLMQQLAPLSYIVGGS 134

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
              K+G  +        L +  Y+     +  G F V G  ++++P    DV  R+ +  
Sbjct: 135 FDFKVGQRLILDAEKQRLERAGYRNVPQVMDPGDFTVRGGLLDVYPMGT-DVPLRIELLD 193

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
            +I+ I  F P + + +  V+ I +            L   +      L+ R        
Sbjct: 194 EEIDSIRTFDPESQRSLNQVDVIHMLPGREVPLDPAVLERVLVR----LRERFD------ 243

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL--TGRNPGEPPPTLFEYIPEDSLLF 472
                  L+ R +   + L+   +   IE Y      +GR       TLF+Y+  D L+ 
Sbjct: 244 -------LDTRRSALYQDLKAGLAPSGIEYYLPLFFESGRGGKHATATLFDYLSADLLVL 296

Query: 473 VDE-----SHVTIPQISGMYRGDFH 492
                   +     Q    Y    H
Sbjct: 297 TAPGVSNAADAFWGQTMQRYEQRRH 321



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL + + E  I +   H ++   E   ++ D +   F+VL+   ++  G+DIP   
Sbjct: 874 RMQRDLAQLVPEARIGIA--HGQMPERELERVMLDFQKQHFNVLLSTTIIESGIDIPNAN 931

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +S+
Sbjct: 932 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVVPDRRSM 972


>gi|83311564|ref|YP_421828.1| transcription-repair coupling factor [Magnetospirillum magneticum
           AMB-1]
 gi|82946405|dbj|BAE51269.1| Transcription-repair coupling factor [Magnetospirillum magneticum
           AMB-1]
          Length = 1134

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 80/495 (16%), Positives = 163/495 (32%), Gaps = 68/495 (13%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            + +A ++   A++      F P   V  F  + D    +   P  D    +  +     
Sbjct: 16  ILHVARDEGRMARVAEALAFFAPDLQVLEFPGW-DCVPYDRVSPHVDMVARRIDT----- 69

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
                +     ++    ++ +       +   E+ +   +  + G  +   +L+  L K 
Sbjct: 70  ----LARLADGVKGAFVVLTTVPGLAQRVPPREALASATLDARKGSRLSMDKLIGFLSKN 125

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y R D  +  G + V G  ++++P    +   R+  FG++I+ +  F P++ +    + 
Sbjct: 126 GYVRADTVMEPGEYAVRGGIVDLYPPGSAE-PLRLDFFGDEIDSVRSFDPMSQRTTGPMA 184

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
                  S       ++             R    E  G +     L        E +  
Sbjct: 185 GFVCRPVSEVGLDDASIARF----------RTNYREMFGVISGPDPL-------YEAISE 227

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
                 +E++          +   TLF Y+PE +++   +S   +     +    F  +A
Sbjct: 228 GIKFNGMEHWLPLFH-----DGLDTLFAYVPEAAVVLDHQSDEALTARHALVLEYFDARA 282

Query: 496 TLAEYGF---------RLPSCMDNRPLRFEEWNCL--RPTTIVVS---ATPGSWELEQCQ 541
            LA  G           LP   +   L   EW+ L      + +S   A  G        
Sbjct: 283 GLAGAGLTESGMVYHPILP---ERLYLERAEWDRLLAARPVLHLSPFDAVEGDEGAVDAG 339

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G +        G     +  R      + V +     A+ G R+++   T+   + L   
Sbjct: 340 GRL--------GRDFADMRARPGVNVYDCVREHAEEQAKAGRRVVIAAWTQGSRDRLAGV 391

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L +  I+       ++T+E     + L  G+  V V    L  G   P+  L  I + D 
Sbjct: 392 LRDHGIK------GIETVESWAEAQGLDKGRVAVAVLG--LDHGFATPD--LAVITEQDI 441

Query: 662 EGFLRSKTSLIQTIG 676
            G   ++ +  +  G
Sbjct: 442 LGDRLARPARKKKKG 456



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 14/195 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
             + ++ATP    L+     + E  +  T  +D       +      V  + + I     
Sbjct: 738 HVLTLTATPIPRTLQMALSGVKEMSVIATPPIDRLAVRTFVLPYDPVV--LRESILRERY 795

Query: 581 QGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G ++          + + E L +    ++    H  +   +  E++      ++DVL+ 
Sbjct: 796 RGGQVFYVCPRLADIDRVAERLAKLVPEVKTAVAHGRLAPADLEEVMVAFGEKQYDVLLS 855

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            N++  G+D+P    + I  AD  G  +    L Q  GR  R        +     K + 
Sbjct: 856 TNIIESGIDMPSVNTLIIHRADMFGLGQ----LYQLRGRVGRGKTRGYAYFTLPNDKVLS 911

Query: 699 LAIDETTRRREKQLE 713
            A +   +R +    
Sbjct: 912 KAAE---KRLQVMQA 923


>gi|187730283|ref|YP_001880716.1| transcription-repair coupling factor [Shigella boydii CDC 3083-94]
 gi|187427275|gb|ACD06549.1| transcription-repair coupling factor [Shigella boydii CDC 3083-94]
          Length = 1148

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRYVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|319949680|ref|ZP_08023714.1| transcription-repair coupling factor [Dietzia cinnamea P4]
 gi|319436671|gb|EFV91757.1| transcription-repair coupling factor [Dietzia cinnamea P4]
          Length = 1222

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 124/344 (36%), Gaps = 46/344 (13%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
             A+A L  G+   ++   ++    S + F +  + E    P +V+   +    +L  E 
Sbjct: 25  NPALADLRAGL---DRDAAVVRAPESLRPFLVGALAERA--PLLVVTATERECEELADEL 79

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
              +    V  F S+ +    E   P  DT   +   ++             +  R   I
Sbjct: 80  SGMYDGE-VAQFPSW-ETLPHERLSPAADTIGRRLEVLS-----------AVMAGRAPRI 126

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           +V++   +    S  +  +  V+L  GD V+  +L++ L +  Y R+D+   RG   V G
Sbjct: 127 IVAAARSVVQPISPAAARREPVRLTRGDEVDPTDLMARLAEFAYTREDMVARRGDIAVRG 186

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI--RNVETIKIYANSHYVTPRPT 391
             +++FP    D   R+   G++I EI EF     + +    VE + +Y     +     
Sbjct: 187 GIVDVFP-TTADHPLRIEFDGDEIAEIREFSVADQRSLPDGEVEQVVLYPCRELLLDDDV 245

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
              A                  G+L    R    +   L+ L        +E  +  L  
Sbjct: 246 RARA------------------GQLAAEHRANPTLAELLDSLAEGIPRDGMEALTSVL-- 285

Query: 452 RNPGEPPPTLFEYIPEDSLLFV---DESHVTIPQISGMYRGDFH 492
             PGE   TL   +P+D+ + V   D+       ++   R    
Sbjct: 286 -VPGEM-ATLPMLMPDDTRVVVCDPDKVRRRAADLASAGREFLE 327



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 69/202 (34%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + ++ PP E     T V     + V   I    
Sbjct: 801 VLTMSATPIPRTLEMSLAGIREM----SQILTPPEERLPVLTYVGAYSDKHVAAAIRREL 856

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++       R  +     + +     R +  H ++   +  + +      ++DVLV
Sbjct: 857 LREGQVFYVHNRVRTIDSTAARIRDLVPEARVVVAHGQMGEEQLEQTVGGFWNREYDVLV 916

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  +D+ G  +    + Q  GR  R+       +     K  
Sbjct: 917 CTTIVETGLDISNANTLIVDRSDQLGLSQ----MHQLRGRVGRSRERGYAYFLYDPEKP- 971

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N    
Sbjct: 972 ---LTETAYDRLATIAQNNDLG 990


>gi|313203296|ref|YP_004041953.1| transcriptioN-repair coupling factor [Paludibacter propionicigenes
           WB4]
 gi|312442612|gb|ADQ78968.1| transcription-repair coupling factor [Paludibacter propionicigenes
           WB4]
          Length = 1113

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 96/249 (38%), Gaps = 16/249 (6%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           +D+     Q   + +L+    S E+   + G++GS      A + +A     I++  +  
Sbjct: 4   SDFQQLYAQHPQVKELVSWASSSEQNIKISGLSGSSCALVAASLFKAHSNTQILVMNDAD 63

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
            AA LY++ K       V +F S Y                 K S ++   + +R     
Sbjct: 64  DAAYLYNDLKQILSTEEVFFFPSSYKRAI-------------KLSQLDAANEILRTEVLN 110

Query: 265 SLL--ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
            L        +V    S +  + S  S    ++++  G+ +    ++  L++  ++R D 
Sbjct: 111 RLANTSSPIVVVTYPESLMQKVVSAGSMQTRMLRMHTGEGLSLNFVVEMLIEYGFERVDF 170

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
               G F V G  ++IF S+  ++ +R   FG++IE I  F   T         I I  +
Sbjct: 171 VYEPGQFSVRGSIVDIF-SYANELPYRCDFFGDEIETIRVFDIETQLSQEKKSEIIIIPD 229

Query: 383 SHYVTPRPT 391
               T  P 
Sbjct: 230 LQSDTESPH 238



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 16/192 (8%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     II   P        E+       + + + I L   +
Sbjct: 704 TLTMTATPIPRTLQFSLMGARDLSIINTPPPNRYPVQTEVHVFDE--DVIREAIQLEMNR 761

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++       +   ++   +       RV   H ++   +  EII D    ++DVLV  
Sbjct: 762 NGQVFFVNNRIQNIYNIEAMIRRLVPGCRVAVGHGQMPADKLEEIIVDFIDYEYDVLVAT 821

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I  A   G     + L Q  GR  R+ N K   Y      S+  
Sbjct: 822 TIIESGIDISNANTIIINSAHNFGL----SDLHQLRGRVGRS-NRKAFCYLLAPELSLL- 875

Query: 700 AIDETTRRREKQ 711
                  RR  Q
Sbjct: 876 ---TPEARRRLQ 884


>gi|261856564|ref|YP_003263847.1| transcription-repair coupling factor [Halothiobacillus neapolitanus
           c2]
 gi|261837033|gb|ACX96800.1| transcription-repair coupling factor [Halothiobacillus neapolitanus
           c2]
          Length = 1159

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 107/297 (36%), Gaps = 39/297 (13%)

Query: 180 GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK-NFFPHNAVEYFVSYYDYYQPEAYV 238
           G  F++A+      +  +V+ P+   A +L        FP +        ++    + + 
Sbjct: 28  GTAFSLAEFARRTPQALLVITPDSRQANELAEALALFDFPAD----IFPDWEVLPYDRFS 83

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLK 298
           P  D        I++++ R+ H        ++   ++++ + +  +      +     LK
Sbjct: 84  PHQDL-------ISDRLARLWHL----PRTQSGITLIAAPTVLQRLAPPSFVTGHGFLLK 132

Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358
            GD+++++     L    Y      +  G F + G  I++FP  +     R+ +F ++IE
Sbjct: 133 AGDTLDREAYRQQLTDAGYLAVSQVVQPGEFALRGGLIDVFPMGMS-QPVRIDLFDDEIE 191

Query: 359 EISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE 418
            +  F P T +    V  I +     +          +   +   + R       G    
Sbjct: 192 TLRLFDPETQRSADPVAEITLLPAREFPLNEE----GIALFRRNWRNRFE-----GDPTR 242

Query: 419 AQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
           +   +Q        +        IE Y          E   TLF+Y+P+D+LLF   
Sbjct: 243 SPVYKQ--------ISEGLIPAGIETYLPLFF-----EHTGTLFDYLPKDALLFTLP 286



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 72/176 (40%), Gaps = 13/176 (7%)

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQGLRI 585
           ++ATP    L      I +  I  T      + +++   + +D  + + +    ++G ++
Sbjct: 763 LTATPIPRTLNMALSGIRDLSIIAT-PPRERLSVKTLLLRWDDAQIREAVQRELKRGGQV 821

Query: 586 LLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
                 V +  RMA+ L + + E  I V   H ++      +I+ D    +F+VL+   +
Sbjct: 822 YFLHNEVRSIERMAKQLADLIPEARIAVA--HGQLSERGLEQIMADFYHQRFNVLLSTTI 879

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  G+D+P    + I  ADK G  +    L Q  GR  R+ +             +
Sbjct: 880 IESGIDVPTANTILINRADKFGLAQ----LHQLRGRVGRSHHRAYAYLITPEPAQM 931


>gi|288575749|ref|ZP_06393935.1| transcription-repair coupling factor [Neisseria mucosa ATCC 25996]
 gi|288567231|gb|EFC88791.1| transcription-repair coupling factor [Neisseria mucosa ATCC 25996]
          Length = 529

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 144/421 (34%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGYFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSD 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q ++    +       G RILL   +    E +  +L +  ++ 
Sbjct: 340 EHTLPDLAV-----NRQSDEPLQALKDFQTTFGGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395


>gi|333004926|gb|EGK24446.1| transcription-repair coupling factor [Shigella flexneri VA-6]
          Length = 1148

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRYVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|262370461|ref|ZP_06063787.1| transcription-repair coupling protein [Acinetobacter johnsonii
           SH046]
 gi|262314803|gb|EEY95844.1| transcription-repair coupling protein [Acinetobacter johnsonii
           SH046]
          Length = 1152

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 116/341 (34%), Gaps = 38/341 (11%)

Query: 157 IAQL-LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           I+QL ++ + + EK   L  + GS     +  +    ++  +V+A N    AQL SEF+ 
Sbjct: 6   ISQLNVQQLKAGEKR-WLGNLLGSSAALFIQTLSTQNKKLFVVVAKNNQHLAQLESEFEF 64

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
           +     +      ++    +   P  D   E+ + ++              + +   +++
Sbjct: 65  YGIRPTI---FPDWEILPYDRLSPHQDIVSERLAILSN-------------MPQTGVLLI 108

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           S+ +    +            + +G   E ++    L++  Y   D     G F V G  
Sbjct: 109 SASTLAQRVAPTSWVLGEHFDIHVGQKFELEQQKKRLIQAGYHLVDTVYDHGEFAVRGSI 168

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++I+ +  +    R+ +F ++IE +  F P T +  +N++   +     +          
Sbjct: 169 MDIY-ASGQAAPIRIDLFDDEIETLKFFDPETQRTTQNLKQFSVLPAKEFPLKEARSI-- 225

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
                   + R  E+       +            + +    +   IE Y          
Sbjct: 226 -------FRDRYAEMFPTANPKK--------NPIYQDVLEGIASPGIEFYFPLFFSAAQM 270

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           E   TL  Y+P  S++  D        +   ++    R   
Sbjct: 271 ETQSTLLSYLPSHSIVITD--KQVDDGLDSFWKEIDRRYED 309



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 7/177 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+        + V + I     +G 
Sbjct: 756 MLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEHTGDSVKEAILRELLRGG 815

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   E L E     R    H +++  E  ++++     +++VLV   +
Sbjct: 816 QVYFLHNEVETIERAAESLRELVPEARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTI 875

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           +  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K ++
Sbjct: 876 IETGIDVPNANTILIERADKLGLAQ----LHQLRGRVGRSHHQAYAYLLVPSIKGLK 928



 Score = 39.3 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 25/229 (10%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       LA Q   ++ + V T    ++  E   +   +  IR+  +     +   
Sbjct: 638 GKTEVAMRAAFLAVQNNKQVAVLVPTTLLAQQHYESFKDRFADWPIRIEVLSRFGSSKSH 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            + I DL  GK D+++G + +L+E +   + GL+ + +  + G    +        +A R
Sbjct: 698 TKTIEDLAEGKVDIVIGTHKILQESVQFKDLGLMIVDEEHRFGVRDKERI------KAMR 751

Query: 681 NVNSKVILYADTITKSIQLA---------IDETTRRREKQLEHNKKHNINPQSVKEKI-M 730
                + L A  I +++ +A         I     RR       ++H     SVKE I  
Sbjct: 752 ADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEH--TGDSVKEAILR 809

Query: 731 EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
           E++    +        +I+    SL +   +A +     QM      L 
Sbjct: 810 ELLRGGQVYFLHNEVETIERAAESLRELVPEARVAVAHGQMRE--RELE 856


>gi|253998954|ref|YP_003051017.1| transcription-repair coupling factor [Methylovorus sp. SIP3-4]
 gi|253985633|gb|ACT50490.1| transcription-repair coupling factor [Methylovorus sp. SIP3-4]
          Length = 1138

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 80/495 (16%), Positives = 160/495 (32%), Gaps = 75/495 (15%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQR-PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L  G+          ++ +  +R P +++  +   A +L  E   F    +V        
Sbjct: 19  LPTGLDSLALAQLARELKQKPERTPLVILCASAFEAQRLLEEMPWFAADLSVHM------ 72

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                  +P  +T      S +  +   R +    + +    +++  VS         +Y
Sbjct: 73  -------MPDWETLPYDHFSPHPDLISERLATLYQISQNTCDVIIVPVSTALIRVPPNAY 125

Query: 291 -SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
            +     LK    ++ + L +   +  Y      +  G F V G  +++FP     + +R
Sbjct: 126 LAAHTFMLKKNQRLDLEALRTQCAEAGYHHVSQVMSPGEFSVRGGLVDLFPMGSS-LPYR 184

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           + +F ++IE I  F   T + +  V  I++     +      ++   +  +E        
Sbjct: 185 LDLFDDEIESIRTFDVDTQRSVYPVSEIRLLPAREFPLDEAGISRFRQNFRE-------- 236

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
                   E      RI  D+     +G    IE Y          E   T+ +Y+P  +
Sbjct: 237 ------TFEGDPSRSRIYKDVSKGIASG---GIEWYLPLFF-----EETATVLDYLPNSA 282

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD-NRPLRFEEWNCLRPTTIVV 528
           +L +  +     Q  G +R    R   L           D  RP        L+P  +++
Sbjct: 283 ILCMHGNIDHAAQ--GFWRDAQSRYRQL---------AHDPERP-------ILQPEVLLL 324

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
             T   +      G I       +GL    +E R A   +  + + I        RIL+ 
Sbjct: 325 -KTEDFFARTHAWGRIQLTTETASGLPALEIE-RRADHPLHKLQEFIKKYKG---RILIA 379

Query: 589 VLTKRMAEDLTEYLYERNIR---VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
             +    E + +   +  +        H             + + G   V++G+  L  G
Sbjct: 380 AESLGRRETMAQLFSDHQVPFSACGDGHGN--------SWEEFQQGDARVMLGVAALHGG 431

Query: 646 LDIPECGLVAILDAD 660
                     I +A+
Sbjct: 432 FVAD--KFCIITEAE 444



 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           M E L   L E  I +   H +++  E   ++RD    +F++L+   ++  G+D+P    
Sbjct: 822 MKEKLERILPEARIGIA--HGQLRERELEHVMRDFYQQRFNLLLCTTIIETGIDVPTANT 879

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           + +  AD  G  +    L Q  GR  R+ +           ++I
Sbjct: 880 IIMNRADMFGLAQ----LHQLRGRVGRSHHQAYAYLLTDPDRNI 919


>gi|86146945|ref|ZP_01065263.1| transcription-repair coupling factor [Vibrio sp. MED222]
 gi|85835195|gb|EAQ53335.1| transcription-repair coupling factor [Vibrio sp. MED222]
          Length = 1153

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 97/516 (18%), Positives = 185/516 (35%), Gaps = 68/516 (13%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS    T+AK+ E      ++  P+  +A +L SE + F  H                
Sbjct: 24  LVGSSLALTIAKLAEQHNSHTLLAVPDPQIALKLQSEIEQFTAHEV-------------- 69

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS-QMI 294
           A  P  +T      S +++I   R +   +L    D I +  +S +    S   +  Q  
Sbjct: 70  ALFPDWETLPYDSFSPHQEIISDRIARLYALPTLKDGITIVPISTLLQRQSPRDFLLQHT 129

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K GD    ++L   L K  Y+  D     G +   G  +++FP   +D  +R+  F 
Sbjct: 130 LMVKTGDLYSLEKLRLQLEKSGYRYVDQVFGPGEYASRGSILDLFPMGSKD-PYRIDFFD 188

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P   + I ++  I++     +    PT  TA++        R+   ++  
Sbjct: 189 DEIDTIRTFEPENQRSIEDISEIRLLPAHEF----PTSETAIEDF------RIRWRQQFD 238

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
              E + +   ++              IE +          E   TLF+Y+ +++ L + 
Sbjct: 239 ARREPESVYMHVSK-------GTWPAGIEYWQPLFF-----EHTETLFDYVADEAQLLIL 286

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP-LRFEEWNCLRPTTIVVSATPG 533
               T   +        HR                 RP L  E+    +           
Sbjct: 287 GDVET--AVDSFLTDVSHRYEQR--------GVDPLRPLLTPEQLWLKKDELFAHFKQKP 336

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ-GLRILLTVLTK 592
              L      I E+  R T L   P+   S + Q ++    +    +    +++ +V ++
Sbjct: 337 QVNL--SLDTIEEKAGR-TNLPVMPLPDLSVQHQNKEPLSNLRKFTEAFDGKVVFSVESE 393

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
              E L+E L  R I+VR           +E +     GK    + +     G    E  
Sbjct: 394 GRREALSELL--RGIKVR--------PSEVENLDAAIKGKDKFTLILGSAEHGFIHEEQN 443

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +  + ++D  G       +IQ   +  ++VNS  ++
Sbjct: 444 IALVCESDLLG-----DRVIQRRKKDKKSVNSDTVI 474



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 68/185 (36%), Gaps = 12/185 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R +   +  V + +     +
Sbjct: 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRESDDAI--VREAVLREIMR 811

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E   E L +     R    H +++  E   I+ D    +F++LV  
Sbjct: 812 GGQVYFLHNQVDTIEKTAESLQKLIPEARVTVAHGQMRERELERIMNDFYHQRFNLLVCT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K++  
Sbjct: 872 TIIETGIDVPTANTILMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAMTK 927

Query: 700 -AIDE 703
            AI  
Sbjct: 928 DAIKR 932


>gi|284799822|ref|ZP_05984959.2| transcription-repair coupling factor [Neisseria subflava NJ9703]
 gi|284796912|gb|EFC52259.1| transcription-repair coupling factor [Neisseria subflava NJ9703]
          Length = 1164

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/501 (15%), Positives = 167/501 (33%), Gaps = 69/501 (13%)

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           P+K L   L  + +          F   +D      ++P  +T   +  S ++ +   R 
Sbjct: 61  PHKQLKVVLTQDAEQALRLQTAWLFFRPHDT---AVFLPDWETLPYERFSPHQDLVSERL 117

Query: 261 SATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA   +     D + V   + +  +  V   +     LK G +++   L + LV   Y  
Sbjct: 118 SALWQIKSGVADVLFVPVATAMQKLPPVSFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNH 177

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
               +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  I++
Sbjct: 178 VSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVSEIRL 236

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
                + T            +EE+                           + +      
Sbjct: 237 LPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVYKAVSNGHFG 279

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +E Y              TLF+YI ED+L     S   +   +  +  D   +  +A+
Sbjct: 280 AGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSDVKSRYAMAQ 332

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
                P               L P  + +SA   +  L+    ++ +       L +  V
Sbjct: 333 GDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDIFGDEHTLPNVAV 378

Query: 560 EIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
                  Q ++    + +       RILL   +    E +  +L +  ++ + + S+ + 
Sbjct: 379 -----NRQADEPLQALKDFQTAFNGRILLCAESLGRRETMLGFLQQNGLKAKSV-SDWQG 432

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
                           +++ +  L  G  + +  +  I ++D          L Q + R+
Sbjct: 433 FLSAHEP---------LMITVAPLAYGFKLEDQNIAVITESD----------LYQYVARS 473

Query: 679 ARNVNSKVILYADTITKSIQL 699
            ++   K    +D + + +  
Sbjct: 474 RKHHRKKHAAVSDGLLRDLAE 494



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 769  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 825

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 826  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 883

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 884  LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 932

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 933  -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 969

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 970  GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1002


>gi|215486325|ref|YP_002328756.1| transcription-repair coupling factor [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312968807|ref|ZP_07783014.1| transcription-repair coupling factor [Escherichia coli 2362-75]
 gi|215264397|emb|CAS08754.1| transcription-repair coupling factor [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312286209|gb|EFR14122.1| transcription-repair coupling factor [Escherichia coli 2362-75]
 gi|323190466|gb|EFZ75740.1| transcription-repair coupling factor [Escherichia coli RN587/1]
          Length = 1148

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  V+ I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVDAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|312883532|ref|ZP_07743257.1| transcription-repair coupling factor [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368755|gb|EFP96282.1| transcription-repair coupling factor [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 1154

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 118/299 (39%), Gaps = 38/299 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     ++++ ++    A+++ P+   A ++  E    F   +V  F          
Sbjct: 24  LIGSSLPIAISELAKSHNAHALLVVPDPQSALKITHEL-EQFTDQSVSLF---------- 72

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS-QMI 294
              P  +T      S +++I   R S    L  +++ I V  ++ +  + S   +  Q  
Sbjct: 73  ---PDWETLPYDSFSPHQEIISDRISHLYHLPTQSEGITVVPINTLLQLQSPREFLLQHT 129

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K+GD     +L   L K  Y+  +     G +   G  +++FP    D  +RV  F 
Sbjct: 130 LMVKVGDLFSLDKLKIQLEKSGYRHVEQVFGPGEYATRGSILDLFPM-GSDTPFRVDFFD 188

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
            +I+ I  F P   + +   + I++     +    PT  +A++  +   + R        
Sbjct: 189 EEIDSIRTFDPENQRSLTETDEIRLLPAHEF----PTTESAIEDFRVRWRQR-------- 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
              EA+R  + +      +        IE +          E   TLF+YIP++SL+ V
Sbjct: 237 --FEARREPESVYM---QVSKGVWPAGIEYWQPLFF-----ETTETLFDYIPDNSLMIV 285



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 10/184 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q +DV   +       +G
Sbjct: 755 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQKDDVVVREAALREIMRG 813

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E +   L +     R  + H +++  E  +I+ D    ++++LV   
Sbjct: 814 GQVYFLHNQVETIEKVASELEKLIPEARVTFAHGQMRERELEQIMNDFYHQRYNLLVCTT 873

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL- 699
           ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I   
Sbjct: 874 IIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAITKD 929

Query: 700 AIDE 703
           AI  
Sbjct: 930 AIKR 933


>gi|117623299|ref|YP_852212.1| transcription-repair coupling factor [Escherichia coli APEC O1]
 gi|115512423|gb|ABJ00498.1| transcription-repair coupling factor; mutation frequency decline
           [Escherichia coli APEC O1]
          Length = 1164

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|313894846|ref|ZP_07828406.1| transcription-repair coupling factor [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312976527|gb|EFR41982.1| transcription-repair coupling factor [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 1094

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 78/415 (18%), Positives = 146/415 (35%), Gaps = 52/415 (12%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+ +L + + ++ +  L  G  GS K   +A   +   RP  ++   +        +  
Sbjct: 12  PAVRKLSEELAAQPQQILAHGCAGSLKHAAVAAAYDGTPRPLAIVTAGRESLRAWQEDLT 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR--MRHSATRSLLERNDC 272
              P   V               +P  D  +       + ++R   R +    LL R   
Sbjct: 72  ALLPEADVY-------------ELPELDYALAAVQGAAKGMERAAQRMNILGRLLRREPI 118

Query: 273 IVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV++ +      G S   +S+  + L++GD++ ++ELL+ +V   Y+        G F V
Sbjct: 119 IVLADIGAAAQKGLSAAEFSRASLSLRLGDTLVREELLARMVGMGYEHAAEVEHVGQFSV 178

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP- 390
            G  ++IFP +      R+  F  +I+ + E+  +T + I+N+ T  I            
Sbjct: 179 RGGIVDIFPINALS-PIRIEFFDAEIDSMREYDAVTRRSIKNISTASIMPLRAADDEGEA 237

Query: 391 ---TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
              +   A      +   RLI    +    +A R   RI +  E L   G+    E +  
Sbjct: 238 CFLSYLGAAGITVFDEPTRLITALHDAVQEDAAR-AARI-FSWEELVAEGA-AGHELFVS 294

Query: 448 YLTGRNPGEPPPTLFEY-------IPEDSLLFVDESHVTIPQISG--MYRGDFHRKATLA 498
            ++ + P   P  L  +             L   E    + Q +   +  G   R   + 
Sbjct: 295 LMSRKLPACAPRALIPFQMVPMTAFRRQFTLLESELRRYLAQQARVLVLAGGSERANVIR 354

Query: 499 EY--GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
           +   G++LP+ +  R                  ATP   E+    G +      P
Sbjct: 355 DMLAGWKLPAALLRRE-----------------ATPAPGEISAAGGALRAGFELP 392



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 70/192 (36%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     G     II        PV+     +    +   I     +G 
Sbjct: 703 VLTLSATPIPRTLHMSLAGARDMSIIETPPADRLPVQSYVVESSDAMMRGAIERELSRGG 762

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + + E+L       R    H ++      +++ D   G +D+L+  ++
Sbjct: 763 QVYFIYNRVESIDRMREHLLRLVPEARIATAHGQMNEDILEQVMMDFYEGHYDILLATSI 822

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+     V I DAD+ G  +    L Q  GR  R+       +     K     +
Sbjct: 823 IENGIDVANANTVIIYDADRFGLSQ----LYQMRGRVGRSAKMAFAYFTYRRDK----VL 874

Query: 702 DETTRRREKQLE 713
            ET  +R + ++
Sbjct: 875 SETAEKRLQAMK 886


>gi|315442986|ref|YP_004075865.1| transcription-repair coupling factor Mfd [Mycobacterium sp. Spyr1]
 gi|315261289|gb|ADT98030.1| transcription-repair coupling factor Mfd [Mycobacterium sp. Spyr1]
          Length = 1202

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/316 (17%), Positives = 107/316 (33%), Gaps = 29/316 (9%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           S + F  + + +A     +V+      A  L +E +  F   +V  F S+ +    E   
Sbjct: 47  SARPFVASALAQAGL--LLVVTATGREADDLTAELRGVFGD-SVAMFPSW-ETLPHERLS 102

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLK 298
           P  DT   +       + R+       L E    +V ++ S +  +   +      V L 
Sbjct: 103 PGVDTVGARMM----LLRRLAFPDDARLGEPLRVVVATARSLVQPMA-PDLAQIDPVTLT 157

Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358
           +G   +   +++ LV   Y R D+   RG F V G  +++FP   E    RV  +G++I 
Sbjct: 158 VGAEADFDSVVARLVDLAYTRVDMVGKRGEFAVRGGILDLFPPTAE-HPVRVEFWGDEIS 216

Query: 359 EISEFYPLTGQKIR--NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           E+  F     + I    ++T+        +        A                     
Sbjct: 217 EMRMFSVADQRSIPEIEIDTVIAVPCRELLLTADVRERAAA-------------LSAEHP 263

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
           +    +   +   L  L        +E     L   +      TL +++PE + L V + 
Sbjct: 264 VSENNVPGSVPDMLARLAEGIPVDGMEALLPLLRPSDF----ATLPDHLPEGTPLLVCDP 319

Query: 477 HVTIPQISGMYRGDFH 492
                + + + +    
Sbjct: 320 EKVRTRAADLIKTGRE 335



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQVEDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E         Q +D      L  + 
Sbjct: 798 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGQHDDKQIAAALRREM 853

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +        R  +     + +     R +  H ++   +  + +      ++D+LV
Sbjct: 854 LRDGQAFYIHNRVRTIDSAAAKVRQLVPEARVVVAHGQMPEEQLEKTVEGFWNREYDILV 913

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +        
Sbjct: 914 CTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPPEVP- 968

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N +  
Sbjct: 969 ---LTETAYDRLATIAQNNELG 987


>gi|218689066|ref|YP_002397278.1| transcription-repair coupling factor [Escherichia coli ED1a]
 gi|218426630|emb|CAR07458.1| transcription-repair coupling factor [Escherichia coli ED1a]
          Length = 1148

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALAMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLI 283



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|59801051|ref|YP_207763.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae FA 1090]
 gi|59717946|gb|AAW89351.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae FA 1090]
          Length = 1234

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 142/421 (33%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R   V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKAVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E   +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDSIKTFDTDTQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWND 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q +D    + +       RILL   +    E +  +L +  ++ 
Sbjct: 340 AHSLPDLAV-----NRQSDDPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 837  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 893

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 894  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 951

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 952  LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1000

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1001 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1037

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1038 GAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDL 1070


>gi|170020491|ref|YP_001725445.1| transcription-repair coupling factor [Escherichia coli ATCC 8739]
 gi|169755419|gb|ACA78118.1| transcription-repair coupling factor [Escherichia coli ATCC 8739]
          Length = 1164

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|300821105|ref|ZP_07101254.1| transcription-repair coupling factor [Escherichia coli MS 119-7]
 gi|331676906|ref|ZP_08377602.1| transcription-repair coupling factor [Escherichia coli H591]
 gi|300526404|gb|EFK47473.1| transcription-repair coupling factor [Escherichia coli MS 119-7]
 gi|331075595|gb|EGI46893.1| transcription-repair coupling factor [Escherichia coli H591]
          Length = 1164

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|300938685|ref|ZP_07153409.1| transcription-repair coupling factor [Escherichia coli MS 21-1]
 gi|300456330|gb|EFK19823.1| transcription-repair coupling factor [Escherichia coli MS 21-1]
          Length = 1164

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|268686819|ref|ZP_06153681.1| transcription-repair coupling factor [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627103|gb|EEZ59503.1| transcription-repair coupling factor [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 1241

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 142/421 (33%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R   V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 39  HKRLKAVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 85

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 86  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 145

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E   +R+ +F ++I+ I  F   T + 
Sbjct: 146 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDSIKTFDTDTQRT 204

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 205 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 247

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 248 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWND 300

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 301 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 346

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q +D    + +       RILL   +    E +  +L +  ++ 
Sbjct: 347 AHSLPDLAV-----NRQSDDPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKA 401

Query: 610 R 610
           +
Sbjct: 402 K 402



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 844  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 900

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 901  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 958

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 959  LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1007

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1008 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1044

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1045 GAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDL 1077


>gi|188491808|ref|ZP_02999078.1| transcription-repair coupling factor [Escherichia coli 53638]
 gi|188487007|gb|EDU62110.1| transcription-repair coupling factor [Escherichia coli 53638]
          Length = 1148

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|331646372|ref|ZP_08347475.1| transcription-repair coupling factor [Escherichia coli M605]
 gi|331045124|gb|EGI17251.1| transcription-repair coupling factor [Escherichia coli M605]
          Length = 1164

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|301328512|ref|ZP_07221578.1| transcription-repair coupling factor [Escherichia coli MS 78-1]
 gi|307310109|ref|ZP_07589759.1| transcription-repair coupling factor [Escherichia coli W]
 gi|300845119|gb|EFK72879.1| transcription-repair coupling factor [Escherichia coli MS 78-1]
 gi|306909827|gb|EFN40321.1| transcription-repair coupling factor [Escherichia coli W]
 gi|315060391|gb|ADT74718.1| transcription-repair coupling factor [Escherichia coli W]
 gi|323379049|gb|ADX51317.1| transcription-repair coupling factor [Escherichia coli KO11]
 gi|324017516|gb|EGB86735.1| transcription-repair coupling factor [Escherichia coli MS 117-3]
          Length = 1164

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|291520738|emb|CBK79031.1| Helicase subunit of the DNA excision repair complex [Coprococcus
           catus GD/7]
          Length = 90

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/90 (57%), Positives = 67/90 (74%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F++ ++Y P+GDQP AI QL+KG     + + LLGVTGSGKTFTMA VI  + +P +
Sbjct: 1   MDHFELVSEYAPTGDQPQAIEQLVKGFKEGNQFETLLGVTGSGKTFTMANVIARLNKPTL 60

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           ++A NK LAAQLY E K FFP+NAVEYFVS
Sbjct: 61  ILAHNKTLAAQLYGEMKEFFPNNAVEYFVS 90


>gi|313792864|gb|EFS40931.1| transcription-repair coupling factor [Propionibacterium acnes
           HL110PA1]
 gi|313802684|gb|EFS43906.1| transcription-repair coupling factor [Propionibacterium acnes
           HL110PA2]
 gi|313840319|gb|EFS78033.1| transcription-repair coupling factor [Propionibacterium acnes
           HL086PA1]
 gi|314964282|gb|EFT08382.1| transcription-repair coupling factor [Propionibacterium acnes
           HL082PA1]
 gi|315078702|gb|EFT50733.1| transcription-repair coupling factor [Propionibacterium acnes
           HL053PA2]
 gi|315081837|gb|EFT53813.1| transcription-repair coupling factor [Propionibacterium acnes
           HL078PA1]
 gi|327456823|gb|EGF03478.1| transcription-repair coupling factor [Propionibacterium acnes
           HL092PA1]
          Length = 1208

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 85/469 (18%), Positives = 154/469 (32%), Gaps = 68/469 (14%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++      A +  +  K +   +AV Y+ S+ +    E   PRTDT   +   +   
Sbjct: 70  PVLLVTSTFREAEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLR-- 126

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
               R   T         +VV+ V  +             V+L +G+  +  EL + LV 
Sbjct: 127 ----RLCGTEG---EVPQVVVAPVRSLLQPQVAGLGRVAPVRLAVGEEHDLTELATELVN 179

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R D+   RG F V G  +++FP  LE    R+  FG++IEE++ F     +     
Sbjct: 180 AAYSRVDMVERRGEFAVRGGIVDVFPPVLE-HPVRIDFFGDEIEEMTSFAVADQRSTDET 238

Query: 375 ETIKIY-ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
               I       +      + A        K  L +  +   +LE              +
Sbjct: 239 HQELICAPCRELILTDEVRSRA--------KALLTDHPELADMLER-------------I 277

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
               + + +E     L           L + +PE +++ + +  +   + + + R     
Sbjct: 278 GNGQAVEGMEALMPALVDEMEL-----LVDVLPEHAMVVLSDPEMVRSRAADLVRTSEEF 332

Query: 494 KA--------------TLAEYGFR-LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
                            LA  G+R L     +   R   W  +   ++  SAT     L 
Sbjct: 333 LGAGWAAAAGGGQAPIDLAASGYRSLAQVRSHCLERGMAWWSMSSFSLDSSAT---DVLV 389

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
                   Q + P       V +      VE    ++      G  +LL    + MA+ +
Sbjct: 390 DDDITSAPQTVNPQ-----LVAVEPWHGDVEAAVKDLTARLDDGWTVLLCAEGEGMAKRM 444

Query: 599 TEYLYERNIRVRYMHS-------EVKTLERIEIIRDLRLGKFDVLVGIN 640
           +E L E N+  R +             + R+            +LV   
Sbjct: 445 SELLGEHNVAARLVDGVDPDATEPCVQVIRLHQRHGFAAESVKLLVAST 493



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 25/205 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--------RTQVEDVYDEIN 576
            + +SATP    LE     I E     T    PP E              QV      I 
Sbjct: 801 VLAMSATPIPRTLEMAVTGIREMSTIAT----PPEERHPVLTFAGPYDEGQV---VAAIR 853

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
               +  ++       +  E     L E     R +  H ++   +  +I+ D    + D
Sbjct: 854 RELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQLEQIMVDFWERRAD 913

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV   ++  G+DI     + I  AD  G  +    L Q  GR  R+       +     
Sbjct: 914 VLVCTTIVESGIDISTANTLLIDRADLMGLSQ----LHQLRGRVGRSRERGYAYFLYPAD 969

Query: 695 KSIQLAIDETTRRREKQLEHNKKHN 719
           K     + +T   R   +  +    
Sbjct: 970 KP----LSQTAHDRLATMAAHTDLG 990


>gi|261253317|ref|ZP_05945890.1| transcription-repair coupling factor [Vibrio orientalis CIP 102891]
 gi|260936708|gb|EEX92697.1| transcription-repair coupling factor [Vibrio orientalis CIP 102891]
          Length = 1153

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 118/313 (37%), Gaps = 38/313 (12%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           L G       + +  + G+     ++++  A  +  ++  P+   A +L  E + F    
Sbjct: 9   LAGAQGAGDKKQIGNLHGASLAIAISELAAAHGKHTLLAVPDPQTALKLLQEIEQF---- 64

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
                       Q  +  P  +T      S +++I   R S    L  +   I +  V  
Sbjct: 65  ----------TTQEVSLFPDWETLPYDSFSPHQEIISDRISRLYQLPTQTGGITIVPVGT 114

Query: 281 IYGIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
           +    S   Y  Q  + +K+GD    ++L   L K  Y+  D     G +   G  +++F
Sbjct: 115 LLQRQSPRDYLMQHTLMVKVGDLFSLEKLRIQLEKSGYRHVDQVFGPGEYASRGSILDLF 174

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P   +D  +R+  F ++I+ I  F P   + I + + I++     +    PT  +A++  
Sbjct: 175 PMGSKD-PFRIDFFDDEIDTIRTFDPENQRSIEDTKEIRLLPAHEF----PTSESAIEDF 229

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
           +   + R           EA+R  + +      +        IE +          E   
Sbjct: 230 RIRWRQR----------FEARREPESVYM---QVSKGTWPAGIEYWQPLFF-----EQTE 271

Query: 460 TLFEYIPEDSLLF 472
           TLF+YIPEDS L 
Sbjct: 272 TLFDYIPEDSQLL 284



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 14/186 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q +D  V + +     +G
Sbjct: 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSDDAVVREAVLREIMRG 812

Query: 583 LRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++          E    DL + + E  + V   H +++  E   I+ D    +F++LV 
Sbjct: 813 GQVYFLHNQVETIEKVAADLEKLVPEARVTVA--HGQMRERELERIMNDFYHQRFNLLVC 870

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K++ 
Sbjct: 871 TTIIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAMT 926

Query: 699 L-AIDE 703
             AI  
Sbjct: 927 KDAIKR 932


>gi|240128422|ref|ZP_04741083.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae SK-93-1035]
          Length = 1234

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 142/421 (33%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R   V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKAVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E   +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDSIKTFDTDTQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWND 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q +D    + +       RILL   +    E +  +L +  ++ 
Sbjct: 340 AHSLPDLAV-----NRQSDDPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 837  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 893

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 894  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 951

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 952  LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1000

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1001 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1037

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1038 GAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDL 1070


>gi|300922643|ref|ZP_07138740.1| transcription-repair coupling factor [Escherichia coli MS 182-1]
 gi|300420992|gb|EFK04303.1| transcription-repair coupling factor [Escherichia coli MS 182-1]
          Length = 1164

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 72/180 (40%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +        T  K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTTHPKAM 938


>gi|300816816|ref|ZP_07097036.1| transcription-repair coupling factor [Escherichia coli MS 107-1]
 gi|300902508|ref|ZP_07120488.1| transcription-repair coupling factor [Escherichia coli MS 84-1]
 gi|301305647|ref|ZP_07211736.1| transcription-repair coupling factor [Escherichia coli MS 124-1]
 gi|309796542|ref|ZP_07690949.1| transcription-repair coupling factor [Escherichia coli MS 145-7]
 gi|300405409|gb|EFJ88947.1| transcription-repair coupling factor [Escherichia coli MS 84-1]
 gi|300530590|gb|EFK51652.1| transcription-repair coupling factor [Escherichia coli MS 107-1]
 gi|300839075|gb|EFK66835.1| transcription-repair coupling factor [Escherichia coli MS 124-1]
 gi|308119854|gb|EFO57116.1| transcription-repair coupling factor [Escherichia coli MS 145-7]
 gi|315253014|gb|EFU32982.1| transcription-repair coupling factor [Escherichia coli MS 85-1]
          Length = 1164

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|15801231|ref|NP_287248.1| transcription-repair coupling factor [Escherichia coli O157:H7
           EDL933]
 gi|12514664|gb|AAG55860.1|AE005321_3 transcription-repair coupling factor; mutation frequency decline
           [Escherichia coli O157:H7 str. EDL933]
          Length = 1148

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPXDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + ++ G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMEKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|315287490|gb|EFU46901.1| transcription-repair coupling factor [Escherichia coli MS 110-3]
          Length = 1164

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|323185763|gb|EFZ71124.1| transcription-repair coupling factor [Escherichia coli 1357]
          Length = 1148

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|300948704|ref|ZP_07162781.1| transcription-repair coupling factor [Escherichia coli MS 116-1]
 gi|300956220|ref|ZP_07168532.1| transcription-repair coupling factor [Escherichia coli MS 175-1]
 gi|301644530|ref|ZP_07244523.1| transcription-repair coupling factor [Escherichia coli MS 146-1]
 gi|331641657|ref|ZP_08342792.1| transcription-repair coupling factor [Escherichia coli H736]
 gi|260449747|gb|ACX40169.1| transcription-repair coupling factor [Escherichia coli DH1]
 gi|300316948|gb|EFJ66732.1| transcription-repair coupling factor [Escherichia coli MS 175-1]
 gi|300451798|gb|EFK15418.1| transcription-repair coupling factor [Escherichia coli MS 116-1]
 gi|301077112|gb|EFK91918.1| transcription-repair coupling factor [Escherichia coli MS 146-1]
 gi|331038455|gb|EGI10675.1| transcription-repair coupling factor [Escherichia coli H736]
          Length = 1164

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|253773863|ref|YP_003036694.1| transcription-repair coupling factor [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253324907|gb|ACT29509.1| transcription-repair coupling factor [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
          Length = 1164

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|323976513|gb|EGB71601.1| transcription-repair coupling protein [Escherichia coli TW10509]
          Length = 1148

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP    D
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPM-GSD 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|323953199|gb|EGB49065.1| transcription-repair coupling protein [Escherichia coli H252]
          Length = 1148

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|300928331|ref|ZP_07143866.1| transcription-repair coupling factor [Escherichia coli MS 187-1]
 gi|300463663|gb|EFK27156.1| transcription-repair coupling factor [Escherichia coli MS 187-1]
          Length = 1164

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|291550022|emb|CBL26284.1| transcription-repair coupling factor [Ruminococcus torques L2-14]
          Length = 1118

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 112/285 (39%), Gaps = 25/285 (8%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +++     +     + G   S K      + +  +    ++  ++  A Q Y E++   
Sbjct: 15  QEIVSSRRKKTGFLQIAGCVNSQKIHLAKALSDGFEYRV-IVFSSEEKAKQAYEEWR-VL 72

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND----CI 273
             N   Y              P  D            +   R    R+++E+       +
Sbjct: 73  EENVWFY--------------PARDLLFYHADIKGAFLTGKRMEVLRAIVEKKGREAITV 118

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V +  + + G+ S E      +++   ++++ ++L  +L    Y+R++     G F V G
Sbjct: 119 VTTMDAFLDGLPSKEELYGNRIKIHAEEALDFQKLQENLSILGYERENQVESPGQFAVRG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             +++FP   E+   R+ ++G++++ I  F   + +   N++ I+IY  +       T +
Sbjct: 179 GILDVFP-LTEENPVRIELWGDEVDSIRSFDVESQRSTENLQEIEIYPATENWKQMETES 237

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL-EMLETTG 437
               +  +E    ++ L++  RL E+  + ++  +   E  E  G
Sbjct: 238 FLAYFPVKE---TILFLDEPVRLQESAEIVEKEYFHSLESREEAG 279



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 91/249 (36%), Gaps = 25/249 (10%)

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP-EDSLLFVDE 475
           L    ++   ++D+E   +T + Q IE Y    T         +   Y P ++++LF+DE
Sbjct: 196 LWGDEVDSIRSFDVESQRSTENLQEIEIYPA--TENWKQMETESFLAYFPVKETILFLDE 253

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
                     + +  FH   +  E G       D  P++ E+ +               +
Sbjct: 254 PVRLQESAEIVEKEYFHSLESREEAGIE----ADEIPIQVEQTDHTIG------KMNKYY 303

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
            +          + +   +    V+ +    +  E +  ++    + G R++L   ++  
Sbjct: 304 GIAFTMLESKCGMFKIRSVYSLQVKTVNPYNSSFELLTRDLKKLKRTGYRVILVSGSRTR 363

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A+ L E L + ++   Y           E+ R +  G+  ++V    + EG + P     
Sbjct: 364 AKRLAEDLRDYDLSSFY---------SEEMERQVNPGE--IMVTCGYIAEGYEYPMLKFT 412

Query: 655 AILDADKEG 663
            I ++D  G
Sbjct: 413 VISESDIFG 421



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 8/186 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      I +  ++    +   P++        E V + I     +G 
Sbjct: 717 VLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDRMPIQTYVMEYNDEMVREAIERELARGG 776

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++           DL   + +     R  Y H ++   +  +I+ D   G  DVLV   +
Sbjct: 777 QVYYVYNRVENIADLALRVQKLVPDARVSYAHGQMNEHQLEDIMYDFINGDIDVLVSTTI 836

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-- 699
           +  GLDI     + I DAD+ G L     L   +GR+ R   + ++   D + K +    
Sbjct: 837 IETGLDIANANTMIIQDADRFG-LSQLYQLRGRVGRSNRMAYAFLLYQRDKMLKEVAEKR 895

Query: 700 --AIDE 703
             AI E
Sbjct: 896 LAAIRE 901


>gi|293414407|ref|ZP_06657056.1| transcription-repair coupling factor [Escherichia coli B185]
 gi|291434465|gb|EFF07438.1| transcription-repair coupling factor [Escherichia coli B185]
          Length = 1148

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|260867476|ref|YP_003233878.1| transcription-repair coupling factor Mfd [Escherichia coli O111:H-
           str. 11128]
 gi|257763832|dbj|BAI35327.1| transcription-repair coupling factor Mfd [Escherichia coli O111:H-
           str. 11128]
          Length = 1148

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|90109237|pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
           Coupling Factor
 gi|90109238|pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
           Coupling Factor
          Length = 1151

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 15  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 73

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 74  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 121

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 122 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 180

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 181 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 236

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 237 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 279

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 280 PANTLLV 286



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMV--VREAILREILR 811

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 812 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 869

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 870 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 925


>gi|193066296|ref|ZP_03047347.1| transcription-repair coupling factor [Escherichia coli E22]
 gi|194429791|ref|ZP_03062305.1| transcription-repair coupling factor [Escherichia coli B171]
 gi|260843354|ref|YP_003221132.1| transcription-repair coupling factor Mfd [Escherichia coli O103:H2
           str. 12009]
 gi|192926068|gb|EDV80711.1| transcription-repair coupling factor [Escherichia coli E22]
 gi|194412138|gb|EDX28446.1| transcription-repair coupling factor [Escherichia coli B171]
 gi|257758501|dbj|BAI29998.1| transcription-repair coupling factor Mfd [Escherichia coli O103:H2
           str. 12009]
 gi|323163658|gb|EFZ49480.1| transcription-repair coupling factor [Escherichia coli E128010]
          Length = 1148

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE   +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEATNLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                     + E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 ----------IFEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|82544418|ref|YP_408365.1| transcription-repair coupling factor [Shigella boydii Sb227]
 gi|81245829|gb|ABB66537.1| transcription-repair coupling factor [Shigella boydii Sb227]
 gi|320175622|gb|EFW50714.1| Transcription-repair coupling factor [Shigella dysenteriae CDC
           74-1112]
 gi|320184241|gb|EFW59055.1| Transcription-repair coupling factor [Shigella flexneri CDC 796-83]
 gi|332094450|gb|EGI99499.1| transcription-repair coupling factor [Shigella boydii 3594-74]
          Length = 1148

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|333008322|gb|EGK27796.1| transcription-repair coupling factor [Shigella flexneri K-272]
 gi|333019810|gb|EGK39082.1| transcription-repair coupling factor [Shigella flexneri K-227]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|332279698|ref|ZP_08392111.1| transcription-repair coupling factor [Shigella sp. D9]
 gi|332102050|gb|EGJ05396.1| transcription-repair coupling factor [Shigella sp. D9]
          Length = 1169

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 33  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 91

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 92  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 139

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 140 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 198

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 199 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 254

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 255 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 297

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 298 PANTLLV 304



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 772 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 829

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 830 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 887

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 888 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 943


>gi|325916554|ref|ZP_08178820.1| transcription-repair coupling factor Mfd [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537227|gb|EGD08957.1| transcription-repair coupling factor Mfd [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 1155

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/321 (15%), Positives = 110/321 (34%), Gaps = 36/321 (11%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           + +   +++A+  EA   P +V+A +   A Q+ ++        +            P  
Sbjct: 26  SPTALAWSIARAAEAHAGPLLVIARDNQSAHQIEADLLALLGETSAL----------PVV 75

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIV 295
             P  +T    + S + +I   R +A   L      +V+  V   +  +  +        
Sbjct: 76  PFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTKGVVIVPVQTLLQQLAPLSYIVGGSF 135

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L++G  ++       L    Y+     +  G F V G  +++FP   +    RV +   
Sbjct: 136 DLRVGQRLDLDGEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPMGAQ-TPLRVELLDE 194

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ I  F P + + +  V+ +K+           ++   +      L+ R         
Sbjct: 195 DIDSIRAFDPESQRSLDKVDAVKMLPGREVPMDDASVERVLAC----LRERFD------- 243

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                 ++ R +   + L++  +   IE Y      +       TLF+Y+ + +L  +  
Sbjct: 244 ------VDTRRSALYQDLKSGIAPSGIEYYLPMFFAKT-----ATLFDYLDKRALSVIAT 292

Query: 476 SHVTIPQISGMYRGDFHRKAT 496
                      +    HR   
Sbjct: 293 G--VSNAADAFWTQAQHRYEQ 311



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL E + E  I +   H ++   E   ++ D +  +F+VL+   ++  G+DIP   
Sbjct: 833 RMQRDLAELVPEARIGIA--HGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNAN 890

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +S+
Sbjct: 891 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVVPDRRSM 931


>gi|323967055|gb|EGB62481.1| transcription-repair coupling protein [Escherichia coli M863]
 gi|327253513|gb|EGE65151.1| transcription-repair coupling factor [Escherichia coli STEC_7v]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP    D
Sbjct: 119 PHSFLHGHALMMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPM-GSD 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE + E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERMAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|319638036|ref|ZP_07992800.1| transcription-repair coupling factor [Neisseria mucosa C102]
 gi|317400681|gb|EFV81338.1| transcription-repair coupling factor [Neisseria mucosa C102]
          Length = 1134

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 80/501 (15%), Positives = 167/501 (33%), Gaps = 69/501 (13%)

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           P+K L   L  + +          F   +D      ++P  +T   +  S ++ +   R 
Sbjct: 31  PHKQLKVVLTQDAEQALRLQTAWLFFRPHDT---AVFLPDWETLPYERFSPHQDLVSERL 87

Query: 261 SATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA   +     D + V   + +  +  V   +     LK G +++   L + LV   Y  
Sbjct: 88  SALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNH 147

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
               +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  I++
Sbjct: 148 VSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVSEIRL 206

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
                + T            +EE+                           + +      
Sbjct: 207 LPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVYKAVSNGHFG 249

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +E Y              TLF+YI ED+L     S   +   +  +  D   +  +A+
Sbjct: 250 AGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSDVKSRYAMAQ 302

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
                P               L P  + +SA      L+    ++ +   +   L D  V
Sbjct: 303 GDETYPP--------------LLPQYLYLSADVFVGRLKNYGQVLPDVSGKEHTLPDLAV 348

Query: 560 EIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
                  Q ++    + +       RILL   +    E +  +L +  ++ + + S+ + 
Sbjct: 349 -----NRQSDEPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKAKSV-SDWQG 402

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
                           +++ +  L  G  + +  +  I ++D          L Q + R+
Sbjct: 403 FLSAHEP---------LMITVAPLAYGFKLEDQNIAVITESD----------LYQYVARS 443

Query: 679 ARNVNSKVILYADTITKSIQL 699
            ++   K    +D + + +  
Sbjct: 444 RKHHRKKHAAVSDGMLRDLAE 464



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 73/187 (39%), Gaps = 17/187 (9%)

Query: 525 TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L                P+  +     ++        V + +    ++
Sbjct: 739 ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE--GSVREAVLRELKR 796

Query: 582 GLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL+
Sbjct: 797 GGQVFFLHNEVDTIENMRERLEALLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVLL 854

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA--DTITK 695
              ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +         + ITK
Sbjct: 855 CSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPEYITK 910

Query: 696 SIQLAID 702
             +  +D
Sbjct: 911 DAEKRLD 917


>gi|315135746|dbj|BAJ42905.1| transcription-repair coupling factor [Escherichia coli DH1]
          Length = 1169

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 33  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 91

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 92  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 139

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 140 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 198

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 199 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 254

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 255 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 297

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 298 PANTLLV 304



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 772 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMV--VREAILREILR 829

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 830 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 887

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 888 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 943


>gi|293433403|ref|ZP_06661831.1| transcription-repair coupling factor [Escherichia coli B088]
 gi|331667514|ref|ZP_08368378.1| transcription-repair coupling factor [Escherichia coli TA271]
 gi|291324222|gb|EFE63644.1| transcription-repair coupling factor [Escherichia coli B088]
 gi|320201009|gb|EFW75593.1| Transcription-repair coupling factor [Escherichia coli EC4100B]
 gi|331065099|gb|EGI36994.1| transcription-repair coupling factor [Escherichia coli TA271]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|170682845|ref|YP_001744064.1| transcription-repair coupling factor [Escherichia coli SMS-3-5]
 gi|170520563|gb|ACB18741.1| transcription-repair coupling factor [Escherichia coli SMS-3-5]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|91210269|ref|YP_540255.1| transcription-repair coupling factor [Escherichia coli UTI89]
 gi|237706900|ref|ZP_04537381.1| transcription-repair coupling factor [Escherichia sp. 3_2_53FAA]
 gi|91071843|gb|ABE06724.1| transcription-repair coupling factor; mutation frequency decline
           [Escherichia coli UTI89]
 gi|226898110|gb|EEH84369.1| transcription-repair coupling factor [Escherichia sp. 3_2_53FAA]
          Length = 1169

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 33  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 91

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 92  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 139

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 140 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 198

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 199 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 254

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 255 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 297

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 298 PANTLLV 304



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 772 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 829

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 830 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 887

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 888 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 943


>gi|33602793|ref|NP_890353.1| transcription-repair coupling factor [Bordetella bronchiseptica
           RB50]
 gi|33577235|emb|CAE35792.1| transcription-repair coupling factor [Bordetella bronchiseptica
           RB50]
          Length = 1151

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 105/319 (32%), Gaps = 38/319 (11%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A A  L  +    +        GSG  + +A +     +P +V+  + + A +L  E  
Sbjct: 12  PATATTLSALKPGARFTQPR-PPGSGDGWLLADLARQAGKPLVVLTADPLEAQRLADEIP 70

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-ERNDCI 273
            F P   V               +P  +T      S ++ +   R     +L+ +  D +
Sbjct: 71  QFAPELRV-------------RQLPDWETLPYDAFSPHQDLISQRLRTLHALMNQGVDIL 117

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
            V   + +Y +      +      K  D +++  L + L    Y         G F + G
Sbjct: 118 TVPVTTALYRLAPPAFLAAYTFSFKQKDRLDEAALRAQLTLANYSHVTQVTAPGEFCLRG 177

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I++FP     V +R+ +F ++IE I  F   T + +  V  +++     +       N
Sbjct: 178 GLIDLFPM-GSVVPYRLDLFDDEIESIRSFDVDTQRSLYPVGEVQLLPGREFPMDEEARN 236

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                                R  E    +       + +    +   IE Y        
Sbjct: 237 -----------------RFRARFREVFEGDPSRALPYKDIGNGIAFAGIEYYLPLFF--- 276

Query: 454 PGEPPPTLFEYIPEDSLLF 472
             E   TLF+Y+  D++  
Sbjct: 277 --EQTATLFDYLAADTITV 293



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 80/202 (39%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +GI    +I   P   +     +R        + + +    ++
Sbjct: 760 VLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTFVRREDG--STIREALLRELKR 817

Query: 582 GLRILLT---VLT-KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T       L E + E  I V   H ++   E  ++++     + +VL+
Sbjct: 818 GGQVYFLHNEVETIHNRRARLEELVPEARIAVA--HGQMPERELEQVMKGFYQQRHNVLL 875

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD+ G  +    L Q  GR  R+ + +   Y  T  +  
Sbjct: 876 CTTIIETGIDIPTANTIVIHRADRFGLAQ----LHQLRGRVGRS-HHQAYAYLLTPGED- 929

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
             AI    ++R + ++  ++  
Sbjct: 930 --AITNNAKKRLEAIQAMEELG 949


>gi|157160641|ref|YP_001457959.1| transcription-repair coupling factor [Escherichia coli HS]
 gi|312971250|ref|ZP_07785428.1| transcription-repair coupling factor [Escherichia coli 1827-70]
 gi|157066321|gb|ABV05576.1| transcription-repair coupling factor [Escherichia coli HS]
 gi|310336452|gb|EFQ01638.1| transcription-repair coupling factor [Escherichia coli 1827-70]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|330910930|gb|EGH39440.1| transcription-repair coupling factor [Escherichia coli AA86]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|82777273|ref|YP_403622.1| transcription-repair coupling factor [Shigella dysenteriae Sd197]
 gi|309788186|ref|ZP_07682792.1| transcription-repair coupling factor [Shigella dysenteriae 1617]
 gi|81241421|gb|ABB62131.1| transcription-repair coupling factor [Shigella dysenteriae Sd197]
 gi|308924038|gb|EFP69539.1| transcription-repair coupling factor [Shigella dysenteriae 1617]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/307 (17%), Positives = 117/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMRRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +   +     A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPIDK----AAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 71/181 (39%), Gaps = 15/181 (8%)

Query: 524 TTIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             + ++ATP    L     G+    II   P   +     +R   + V  V + I     
Sbjct: 750 NILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREIL 807

Query: 581 QGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VL
Sbjct: 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVL 865

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K+
Sbjct: 866 VCTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKA 921

Query: 697 I 697
           +
Sbjct: 922 M 922


>gi|191168584|ref|ZP_03030368.1| transcription-repair coupling factor [Escherichia coli B7A]
 gi|209918370|ref|YP_002292454.1| transcription-repair coupling factor [Escherichia coli SE11]
 gi|218553691|ref|YP_002386604.1| transcription-repair coupling factor [Escherichia coli IAI1]
 gi|218694647|ref|YP_002402314.1| transcription-repair coupling factor [Escherichia coli 55989]
 gi|260854597|ref|YP_003228488.1| transcription-repair coupling factor Mfd [Escherichia coli O26:H11
           str. 11368]
 gi|190901378|gb|EDV61143.1| transcription-repair coupling factor [Escherichia coli B7A]
 gi|209911629|dbj|BAG76703.1| transcription-repair coupling factor [Escherichia coli SE11]
 gi|218351379|emb|CAU97085.1| transcription-repair coupling factor [Escherichia coli 55989]
 gi|218360459|emb|CAQ98013.1| transcription-repair coupling factor [Escherichia coli IAI1]
 gi|257753246|dbj|BAI24748.1| transcription-repair coupling factor Mfd [Escherichia coli O26:H11
           str. 11368]
 gi|323156751|gb|EFZ42887.1| transcription-repair coupling factor [Escherichia coli EPECa14]
 gi|323175269|gb|EFZ60882.1| transcription-repair coupling factor [Escherichia coli LT-68]
 gi|323947582|gb|EGB43586.1| transcription-repair coupling protein [Escherichia coli H120]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|256018630|ref|ZP_05432495.1| transcription-repair coupling factor [Shigella sp. D9]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|218557995|ref|YP_002390908.1| transcription-repair coupling factor [Escherichia coli S88]
 gi|218364764|emb|CAR02454.1| transcription-repair coupling factor [Escherichia coli S88]
 gi|294491241|gb|ADE89997.1| transcription-repair coupling factor [Escherichia coli IHE3034]
 gi|307627415|gb|ADN71719.1| transcription-repair coupling factor [Escherichia coli UM146]
 gi|323957940|gb|EGB53652.1| transcription-repair coupling protein [Escherichia coli H263]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|157158427|ref|YP_001462347.1| transcription-repair coupling factor [Escherichia coli E24377A]
 gi|193070928|ref|ZP_03051859.1| transcription-repair coupling factor [Escherichia coli E110019]
 gi|157080457|gb|ABV20165.1| transcription-repair coupling factor [Escherichia coli E24377A]
 gi|192955782|gb|EDV86254.1| transcription-repair coupling factor [Escherichia coli E110019]
 gi|324117315|gb|EGC11222.1| transcription-repair coupling protein [Escherichia coli E1167]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|315618286|gb|EFU98876.1| transcription-repair coupling factor [Escherichia coli 3431]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHSHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|325497055|gb|EGC94914.1| transcription-repair coupling factor [Escherichia fergusonii
           ECD227]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP    D
Sbjct: 119 PHSFLHGHALMMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPM-GSD 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|210632030|ref|ZP_03297170.1| hypothetical protein COLSTE_01063 [Collinsella stercoris DSM 13279]
 gi|210159746|gb|EEA90717.1| hypothetical protein COLSTE_01063 [Collinsella stercoris DSM 13279]
          Length = 1195

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/342 (17%), Positives = 122/342 (35%), Gaps = 40/342 (11%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            ++  +   + + E   L   V+ S +T  +A       RP + +   +  A +      
Sbjct: 14  ESLQAIEAALAAGEDATLA--VSQSARTLMVAAQFARRPRPTVYIVSGEEAADRAARAIA 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            +     V  F    D             Y  K +  ++ +   R +A   + +   C++
Sbjct: 72  AYVGAEHVARFPERKD-------------YPWKNTEPDDAVVAARCAAIARVAQGEPCVM 118

Query: 275 VSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V+S  S +  +    S        K+G+ +  + +   LV   Y R D   + G FRV G
Sbjct: 119 VASARSLLRCVPPASSRYWASTTFKVGEEISFERVPELLVGMGYTRADAADMPGLFRVHG 178

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           D+++++ +       R+  FG++I+ I      TGQ I + + ++I              
Sbjct: 179 DTVDVWAAQA-TAPVRMEFFGDEIDRIRLMVASTGQTIGDEDAVEISPVRELALTDD--- 234

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
            A+K I   L      L  +     A  L        E+++       +E +   +    
Sbjct: 235 -AVKRISAAL-----YLPAQNDTELAALL--------ELVQARVVTPELERFLPLMY--- 277

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
             E   +   ++  D+L+ + E        +  Y  D  R+A
Sbjct: 278 --EGTVSPLAHVHSDALVILSEPRSLFDDCTRAY-EDLERRA 316



 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 65/181 (35%), Gaps = 13/181 (7%)

Query: 516 EEWNCLRPT--TIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSARTQVED 570
           E+   +R     + +SATP    ++     + +       PTG     V +       + 
Sbjct: 775 EQLKNMREQIDVLTLSATPIPRTMQMAMSGVRDMSLITTPPTGRRAVAVHVGEYDP--DV 832

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDL 628
           V   I L   +G ++       +  +D  E + E     R    H ++   E  +++   
Sbjct: 833 VSAAIRLEIGRGGQVYYVSNRVKTIDDAVERVLEAAPEARIGVAHGKMSPREVEDVMVQF 892

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              K DVL+   ++  G+D      + I D+ + G  +    L Q  GR  R+       
Sbjct: 893 ATKKIDVLIATTIVESGIDNASANTLIIEDSQRLGLAQ----LYQLKGRVGRSATQAYAY 948

Query: 689 Y 689
           +
Sbjct: 949 F 949



 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 11/141 (7%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E            G ++++   T    ++  E   E      + V  +       ++
Sbjct: 668 GKTEVALRAAFKCVDGGRQVMVLCPTTILAQQHYETFFERFAPFGVEVEVLSRFRTPGQQ 727

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              +     GK DVL+G + LL   ++  E GLV I +  + G    +        +  R
Sbjct: 728 RRALAAFAEGKVDVLIGTHRLLSADVNPHELGLVIIDEEQRFGVQHKEQL------KNMR 781

Query: 681 NVNSKVILYADTITKSIQLAI 701
                + L A  I +++Q+A+
Sbjct: 782 EQIDVLTLSATPIPRTMQMAM 802


>gi|254161220|ref|YP_003044328.1| transcription-repair coupling factor [Escherichia coli B str.
           REL606]
 gi|242376916|emb|CAQ31635.1| transcription-repair coupling factor [Escherichia coli BL21(DE3)]
 gi|253973121|gb|ACT38792.1| transcription-repair coupling factor [Escherichia coli B str.
           REL606]
 gi|253977335|gb|ACT43005.1| transcription-repair coupling factor [Escherichia coli BL21(DE3)]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|209773002|gb|ACI84813.1| transcription-repair coupling factor [Escherichia coli]
 gi|326339337|gb|EGD63151.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str.
           1125]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + ++ G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMEKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|227494754|ref|ZP_03925070.1| possible transcription-repair coupling factor [Actinomyces
           coleocanis DSM 15436]
 gi|226831754|gb|EEH64137.1| possible transcription-repair coupling factor [Actinomyces
           coleocanis DSM 15436]
          Length = 1199

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 92/540 (17%), Positives = 182/540 (33%), Gaps = 63/540 (11%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            QLL        V +  G+             +   +P +V+ P    A +L +  + + 
Sbjct: 20  KQLLNQAGIAATVVVPAGL---QAPLLATARQQRNAKPLLVVTPTGRDAERLVNALRCYT 76

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS-ATRSLLERNDCIVVS 276
           P   VE   ++ +    E   P+ DT   + +     + R+++   T +       ++V+
Sbjct: 77  PG--VEMLPAW-ETLPHERLSPQKDTMARRVAV----MRRLKYGDGTLNARGGEIRVLVA 129

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
            +                + L++G  V+   L + LV   Y R D+   RG   V G  I
Sbjct: 130 PLRAFLQPIIGGLADIEPISLRLGSVVDLPSLTAQLVDYGYARVDVVSARGEIAVRGGII 189

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++FP   E    RV +FGN++++I  F     + I   E       +  +     + +  
Sbjct: 190 DVFPP-TESHPVRVELFGNEVDDIRYFSVADQRTIGVAEGGLWAPPARELLLSEAVRSKA 248

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
             ++  L                + L        E++      + +E  S  L      E
Sbjct: 249 ASLQASL------------PGAQEML--------ELISQGHYVEGMETLSPALV-----E 283

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQ---ISGMYRGDFHRKATLAEYGFRLP-SCMDNRP 512
              T+F+ +P  + + + +      +   +              A  G  +P S  D   
Sbjct: 284 KMETIFDLVPAGTSVVLVDPERIEARAADLVATTEEFLAAAWEAAAAGGEIPLSAQDASF 343

Query: 513 LRFEEWNCLR--PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-------VEIRS 563
              +E   L        +  T  +   E    +I   + + +G+V  P         +  
Sbjct: 344 KTLDELRDLAANSQLAWIRMTEIAPS-EIADALISAGVSQHSGVVANPNLVQVGGRAVVP 402

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
            R +++    ++   A    R+++T      A+ L E   E ++  R +  E+ T     
Sbjct: 403 YRGKIDQAVADLRDLAANEWRLVVTTEGPGPAKRLREVFSEADLPARVV-GELAT----- 456

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG-FLRSKTSLIQTIGRAARNV 682
              +   G  D+LV       G    E  +  I ++D  G    S   + +   R+ R  
Sbjct: 457 ---EFATGVVDILVASA--GAGFVHEELKVAVITESDLTGRTGPSTADMRKVPARSKRRG 511



 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 66/198 (33%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-VYDEINLAAQQGL 583
            + +SATP    LE     I E  +  T   D    +       +  V   I     +  
Sbjct: 799 VLSMSATPIPRTLEMAVTGIREMSVLQTPPEDRHPILTFVGAHTDQQVVAAIKRELLRDG 858

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   + E     RVR  H ++   +   +I D    +FDVL+   +
Sbjct: 859 QVFYVHNRVEDIDKVAGKISELVPEARVRVAHGKLNEHQLERVIVDFWNREFDVLICTTI 918

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDI     + +  AD  G  +    L Q  GR  R        +        +  +
Sbjct: 919 VETGLDISNANTLIVDRADAMGLSQ----LHQLRGRVGRGRERGYAYFLYP----GEKVL 970

Query: 702 DETTRRREKQLEHNKKHN 719
            ET   R + +  N    
Sbjct: 971 TETAHERLRTIATNTDLG 988


>gi|194433692|ref|ZP_03065968.1| transcription-repair coupling factor [Shigella dysenteriae 1012]
 gi|194418121|gb|EDX34214.1| transcription-repair coupling factor [Shigella dysenteriae 1012]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|74311675|ref|YP_310094.1| transcription-repair coupling factor [Shigella sonnei Ss046]
 gi|73855152|gb|AAZ87859.1| transcription-repair coupling factor [Shigella sonnei Ss046]
 gi|323165624|gb|EFZ51411.1| transcription-repair coupling factor [Shigella sonnei 53G]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|16129077|ref|NP_415632.1| transcription-repair coupling factor [Escherichia coli str. K-12
           substr. MG1655]
 gi|89107960|ref|AP_001740.1| transcription-repair coupling factor [Escherichia coli str. K-12
           substr. W3110]
 gi|170080765|ref|YP_001730085.1| transcription-repair coupling factor [Escherichia coli str. K-12
           substr. DH10B]
 gi|238900368|ref|YP_002926164.1| transcription-repair coupling factor [Escherichia coli BW2952]
 gi|256023188|ref|ZP_05437053.1| transcription-repair coupling factor [Escherichia sp. 4_1_40B]
 gi|307137749|ref|ZP_07497105.1| transcription-repair coupling factor [Escherichia coli H736]
 gi|2507063|sp|P30958|MFD_ECOLI RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|1651547|dbj|BAA35929.1| transcription-repair coupling factor [Escherichia coli str. K12
           substr. W3110]
 gi|1787357|gb|AAC74198.1| transcription-repair coupling factor [Escherichia coli str. K-12
           substr. MG1655]
 gi|169888600|gb|ACB02307.1| transcription-repair coupling factor [Escherichia coli str. K-12
           substr. DH10B]
 gi|238863683|gb|ACR65681.1| transcription-repair coupling factor [Escherichia coli BW2952]
 gi|309701385|emb|CBJ00686.1| transcription-repair coupling factor [Escherichia coli ETEC H10407]
 gi|323937854|gb|EGB34118.1| transcription-repair coupling protein [Escherichia coli E1520]
 gi|323942583|gb|EGB38750.1| transcription-repair coupling protein [Escherichia coli E482]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|194439730|ref|ZP_03071799.1| transcription-repair coupling factor [Escherichia coli 101-1]
 gi|194421349|gb|EDX37367.1| transcription-repair coupling factor [Escherichia coli 101-1]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 76/192 (39%), Gaps = 18/192 (9%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922

Query: 698 QLAIDETTRRRE 709
                +T +R E
Sbjct: 923 T---TDTQKRLE 931


>gi|317491827|ref|ZP_07950262.1| transcription-repair coupling factor [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920261|gb|EFV41585.1| transcription-repair coupling factor [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 1153

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 86/508 (16%), Positives = 174/508 (34%), Gaps = 61/508 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + ++     LLG +TGS      A++ E    P +++  +   A +L  E + F      
Sbjct: 15  LPAKAGDVRLLGQLTGSACALECAQIAEKHTGPVVLITSDIQSALRLRDEIQQFTSRMVT 74

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
               S ++    +++ P  D    + SS+ +     R              ++   + + 
Sbjct: 75  TL--SDWETLPYDSFSPHQDIISARLSSLYQLPTMKR-----------GVFILPVNTLMQ 121

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +   E      + ++ G  + + +L S L +  Y+  D  +  G F   G  ++++P  
Sbjct: 122 RVCPHEFLHGHALVMQKGQLLSRDKLRSQLEQAGYRSVDQVMEHGEFATRGALLDLYPMG 181

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            ++  +R+  F ++I+ +  F   + + +  VE I +     +    PT  TA++  + +
Sbjct: 182 SDE-PYRIDFFDDEIDSLRVFDVDSQRTLNEVEFINLLPAHEF----PTDQTAIELFRSQ 236

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I    + +        IE +      +    PP  LF
Sbjct: 237 WRE----------HFEVRRDPEHI---YQQVSKGIWPAGIEYWQPLFFSQE--LPP--LF 279

Query: 463 EYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLR 522
            Y P  +LL    +          +     R                 RPL   +   LR
Sbjct: 280 SYFPASTLLI--NTGELEASAERFWLDVNQRYENRR--------VDPMRPLLTPDKLWLR 329

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
              +  S     W   Q +   +++    T L   P+   + + Q +   D +    +  
Sbjct: 330 VDELFSSL--KKWPRVQLKTDKLDKKAANTNLNYQPLPELTVQAQNKSPLDNLRRFIEST 387

Query: 583 LRILLT-VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
              ++  V ++   E + E L    I    +            I D   GK  ++ G   
Sbjct: 388 KDAIVFSVESEGRRETMLELLARIKISPSLIS----------RIEDAEAGKIYIMQGSC- 436

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKT 669
              G   PE  L  I ++D  G   S+ 
Sbjct: 437 -EHGFINPELKLALICESDLLGERVSRR 463



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 757 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREVTR 814

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E   + L E     R    H +++  E   ++ D    +F+VLV  
Sbjct: 815 GGQVYYLYNDVENIEKAAQCLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 874

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 875 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSFHQAYAYLLTPPPKAM 928


>gi|33592030|ref|NP_879674.1| transcription-repair coupling factor [Bordetella pertussis Tohama
           I]
 gi|33571674|emb|CAE41167.1| transcription-repair coupling factor [Bordetella pertussis Tohama
           I]
 gi|332381446|gb|AEE66293.1| transcription-repair coupling factor [Bordetella pertussis CS]
          Length = 1143

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 105/319 (32%), Gaps = 38/319 (11%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A A  L  +    +        GSG  + +A +     +P +V+  + + A +L  E  
Sbjct: 4   PATATTLSALKPGARFTQPR-PPGSGDGWLLADLARQAGKPLVVLTADPLEAQRLADEIP 62

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-ERNDCI 273
            F P   V               +P  +T      S ++ +   R     +L+ +  D +
Sbjct: 63  QFAPELRV-------------RQLPDWETLPYDAFSPHQDLISQRLRTLHALMNQGVDIL 109

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
            V   + +Y +      +      K  D +++  L + L    Y         G F + G
Sbjct: 110 TVPVTTALYRLAPPAFLAAYTFSFKQKDRLDEAALRAQLTLANYSHVTQVTAPGEFCLRG 169

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I++FP     V +R+ +F ++IE I  F   T + +  V  +++     +       N
Sbjct: 170 GLIDLFPM-GSVVPYRLDLFDDEIESIRSFDVDTQRSLYPVGEVQLLPGREFPMDEEARN 228

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                                R  E    +       + +    +   IE Y        
Sbjct: 229 -----------------RFRARFREVFEGDPSRALPYKDIGNGIAFAGIEYYLPLFF--- 268

Query: 454 PGEPPPTLFEYIPEDSLLF 472
             E   TLF+Y+  D++  
Sbjct: 269 --EQTATLFDYLAADTITV 285



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 80/202 (39%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +GI    +I   P   +     +R        + + +    ++
Sbjct: 752 VLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTFVRREDG--STIREALLRELKR 809

Query: 582 GLRILLT---VLT-KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T       L E + E  I V   H ++   E  ++++     + +VL+
Sbjct: 810 GGQVYFLHNEVETIHNRRARLEELVPEARIAVA--HGQMPERELEQVMKGFYQQRHNVLL 867

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD+ G  +    L Q  GR  R+ + +   Y  T  +  
Sbjct: 868 CTTIIETGIDIPTANTIVIHRADRFGLAQ----LHQLRGRVGRS-HHQAYAYLLTPGED- 921

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
             AI    ++R + ++  ++  
Sbjct: 922 --AITNNAKKRLEAIQAMEELG 941


>gi|15830746|ref|NP_309519.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           Sakai]
 gi|168751336|ref|ZP_02776358.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757829|ref|ZP_02782836.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764889|ref|ZP_02789896.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771340|ref|ZP_02796347.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4486]
 gi|168783484|ref|ZP_02808491.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790092|ref|ZP_02815099.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC869]
 gi|168802501|ref|ZP_02827508.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC508]
 gi|195938873|ref|ZP_03084255.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809609|ref|ZP_03251946.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815000|ref|ZP_03256179.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822485|ref|ZP_03262804.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399391|ref|YP_002269959.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328545|ref|ZP_03444627.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           TW14588]
 gi|254792497|ref|YP_003077334.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226982|ref|ZP_05941263.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256216|ref|ZP_05948749.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282134|ref|YP_003498952.1| transcription-repair coupling factor [Escherichia coli O55:H7 str.
           CB9615]
 gi|13360956|dbj|BAB34915.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           Sakai]
 gi|188014612|gb|EDU52734.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999153|gb|EDU68139.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355265|gb|EDU73684.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359855|gb|EDU78274.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365183|gb|EDU83599.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370352|gb|EDU88768.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC869]
 gi|189375509|gb|EDU93925.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC508]
 gi|208729410|gb|EDZ79011.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731648|gb|EDZ80336.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737970|gb|EDZ85653.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160791|gb|ACI38224.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC4115]
 gi|209772998|gb|ACI84811.1| transcription-repair coupling factor [Escherichia coli]
 gi|209773000|gb|ACI84812.1| transcription-repair coupling factor [Escherichia coli]
 gi|209773004|gb|ACI84814.1| transcription-repair coupling factor [Escherichia coli]
 gi|209773006|gb|ACI84815.1| transcription-repair coupling factor [Escherichia coli]
 gi|217318972|gb|EEC27398.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           TW14588]
 gi|254591897|gb|ACT71258.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           TW14359]
 gi|290762007|gb|ADD55968.1| transcription-repair coupling factor [Escherichia coli O55:H7 str.
           CB9615]
 gi|320188121|gb|EFW62786.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str.
           EC1212]
 gi|320637565|gb|EFX07365.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           G5101]
 gi|320643126|gb|EFX12327.1| transcription-repair coupling factor [Escherichia coli O157:H- str.
           493-89]
 gi|320648584|gb|EFX17239.1| transcription-repair coupling factor [Escherichia coli O157:H- str.
           H 2687]
 gi|320653898|gb|EFX21972.1| transcription-repair coupling factor [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659379|gb|EFX26948.1| transcription-repair coupling factor [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320664514|gb|EFX31665.1| transcription-repair coupling factor [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326340418|gb|EGD64221.1| Transcription-repair coupling factor [Escherichia coli O157:H7 str.
           1044]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + ++ G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMEKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|313900859|ref|ZP_07834349.1| transcription-repair coupling factor [Clostridium sp. HGF2]
 gi|312954279|gb|EFR35957.1| transcription-repair coupling factor [Clostridium sp. HGF2]
          Length = 1151

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 76/464 (16%), Positives = 161/464 (34%), Gaps = 56/464 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A+  + K      K  +L  ++   +   +A       +  +++  N   A +LY  
Sbjct: 10  QNEAVLSIQK------KESVLGNLSYMEEALLLAADYRQKPQKLLIIKNNAYTAQKLYER 63

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-D 271
            +       V  F                ++   +  + + +   ++  A   L +++  
Sbjct: 64  LQALLGDE-VLLFSL-------------EESLRVEAIAASPENKAIQMEAMAKLQQQDAF 109

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
             V+++ + I  + S E +    + LK    +E ++L   L +  Y           +  
Sbjct: 110 VAVLNTAAAIRFLPSPEVFKNHCITLKQDQEIEYEDLKQLLFEAGYTHVSRVDQPLCYAA 169

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I+++  +  D   R+  F N +E I  F   T + I  V+   I   S  +     
Sbjct: 170 RGGIIDVYSMNY-DHPLRIEFFDNIVESIRFFDIATQRTIEIVQEAMIIPASDLLFTDAQ 228

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           +   ++   + LK +L + +   + L    L++ +  DL+++           Y  +L  
Sbjct: 229 VAELVEQANKALKNQLSQHDIAMQKL----LQEHVNEDLDLISNHMMESRFYKYYAFLKN 284

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
           R       T+F+Y P D+ + +  +      +  M+         L + G  L S     
Sbjct: 285 R------STVFDYAP-DAQIILSSAEEVQDSVKHMHEEMVSYLQELFQEGISLHS----- 332

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA-RTQVED 570
              F+ +  L       S       +++   +   Q +     +   +   S     +E 
Sbjct: 333 ---FDVFTDL-----YSS-------IKKHSYMEFHQFVDYKKPITSQIMTMSLGDINLER 377

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
              E+   A+   R +L  L  +  E +   L E NI  R + S
Sbjct: 378 TMQEVQHQAR--ERRVLLCLNHKEQEQVKGLLEEANISWRNVTS 419



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 71/193 (36%), Gaps = 13/193 (6%)

Query: 525 TIVVSATPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
            + +SATP    L+        + Q+  P  +   PV+        + V + I     + 
Sbjct: 753 VLSLSATPIPRTLQMSLIGIRSLSQLETPP-MNRMPVQTYVIEKNFQMVKEIIQRELARN 811

Query: 583 LRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +   ++   L +    + +   H ++   +  +++      K+ VLV   
Sbjct: 812 GQVFYLYNNVKEIYNVARKLRDAMPEVEIGVAHGQMTREDIEDVMLQFTDNKYQVLVCTT 871

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+DIP    + I DAD  G  +    L Q  GR  R+          +     Q  
Sbjct: 872 IIETGIDIPNANTILIEDADHFGLSQ----LYQIKGRVGRSDRLAYAYLMYSP----QKQ 923

Query: 701 IDETTRRREKQLE 713
           + E   +R K ++
Sbjct: 924 LSEIAMKRLKSIK 936


>gi|332092875|gb|EGI97943.1| transcription-repair coupling factor [Shigella dysenteriae 155-74]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|323962713|gb|EGB58291.1| transcription-repair coupling protein [Escherichia coli H489]
 gi|323973296|gb|EGB68485.1| transcription-repair coupling protein [Escherichia coli TA007]
 gi|332342663|gb|AEE55997.1| transcription-repair coupling factor protein [Escherichia coli
           UMNK88]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|320179184|gb|EFW54142.1| Transcription-repair coupling factor [Shigella boydii ATCC 9905]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|299362|gb|AAB26029.1| Mfd protein, transcription repair coupling factor, TRCF=mfd product
           [Escherichia coli, Peptide, 1148 aa]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|300723616|ref|YP_003712921.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630138|emb|CBJ90775.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus
           nematophila ATCC 19061]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 119/332 (35%), Gaps = 38/332 (11%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
             R   + L  +TG+      A++I+    P +++  +   A +L  E + F        
Sbjct: 11  ERRGDTRQLGHLTGAACAVECAEIIDRYSGPILLVTKDMQNALRLRDEIQQF-------- 62

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYG 283
                    P   +   +T      S +++I   R S    L       +++   + +  
Sbjct: 63  ------TRAPINMMSDWETLPYDSFSPHQEIISNRLSTLYHLPSMTKGALILPVNTLMQR 116

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +   E      + +     + + +L + L +  Y+  +  +  G F   G   ++FP   
Sbjct: 117 VCPHEYLKGHALVMNKKQHLSRDKLRAELEQAGYRCVEQVLEHGEFATRGALFDLFPMGS 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+  F ++I+ +  F   T + +  VE I +     + T +     A++  + + 
Sbjct: 177 E-HPYRIDFFDDEIDSLRTFDVDTQRTLAEVEKISLLPAHEFPTSQE----AIELFRSQW 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           + +           E +R  + I    + +        IE +          +P P++F+
Sbjct: 232 REQ----------FEVRRDAEHI---YQQVSKKVLPAGIEYWQPLF----FEQPLPSIFD 274

Query: 464 YIPEDSLLFVDESHVTIPQI-SGMYRGDFHRK 494
           Y+PE++L    +      +      +    RK
Sbjct: 275 YLPENTLCITQDLINAAERFWQDTGQRFDSRK 306



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 750 VLTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VRESILREILR 807

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E     L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 808 GGQVYYLYNDVENIEKTRARLEELVPEARIVVGHGQMRERDLERVMTDFHHQRFNVLVCT 867

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++  
Sbjct: 868 TIIETGIDIPSANTIIIERADHLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAMTK 923


>gi|237808985|ref|YP_002893425.1| transcription-repair coupling factor [Tolumonas auensis DSM 9187]
 gi|237501246|gb|ACQ93839.1| transcription-repair coupling factor [Tolumonas auensis DSM 9187]
          Length = 1150

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 109/336 (32%), Gaps = 40/336 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           ++++   +L  G + GS  +  +A+++     P +++  +   A  L  E       N +
Sbjct: 9   LNAKANQRLTFGQLNGSSLSLAIAELVTTQNHPVVLVVNDTPTALYLEQEISFLLKENNI 68

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                      P    P  +T      S ++ I   R      L      +++  V+ + 
Sbjct: 69  -----------PVRLFPDWETLPYDTFSPHQDIISQRIETLYHLPRMKQGLLILPVATLM 117

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                        + +K GD ++   L   L    Y   +  +  G +   G  +++FP 
Sbjct: 118 LRTAPAGFIDGYSLLVKPGDKLDLHNLRQRLEHAGYNAVEQVLEHGEYAARGSLLDLFPM 177

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
                 +R+  F ++++ I  F P T +    V+ +++     +    PT   A+   ++
Sbjct: 178 GSSQ-PYRIDFFDDEVDTIRAFDPDTQRSHDPVKEVRLLPAHEF----PTDKHAIDGFRQ 232

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             +           +              + +        IE Y          E   TL
Sbjct: 233 RFRELFDASRAPDSV-------------YQQVSKGLWPAGIEYYLPLFF-----EQTATL 274

Query: 462 FEYIPEDSLL-FVDESHVTIPQISGMYRGDFHRKAT 496
            +Y+P  SL+  V +      Q    +     R   
Sbjct: 275 LDYLPSSSLILTVGDIQQASEQ---FWLDVQQRYED 307



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 64/180 (35%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    +I   P   +     +R     V  V + I    ++
Sbjct: 754 ILTLTATPIPRTLNMALSGMRDLSVIATPPAKRLAIKTFVRQYDKAV--VREAILRELKR 811

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          +     L E     R    H +++  +   ++ D    ++++LV  
Sbjct: 812 GGQVYYLHNNVETIDQTAALLSELIPEARIAIAHGQMRERDLERVMTDFYHQRYNLLVCT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K +  
Sbjct: 872 TIIETGIDVPSANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKQMTK 927


>gi|332665410|ref|YP_004448198.1| transcription-repair coupling factor [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332334224|gb|AEE51325.1| transcription-repair coupling factor [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 1141

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/288 (21%), Positives = 123/288 (42%), Gaps = 21/288 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           Q      +++ + +    ++ LL + G+  +F +A V        +++A NK  AA   +
Sbjct: 32  QDTRTTSIVQELKNETPARVKLLELVGAQLSFVIAGVYHQHPANHLIVADNKEEAAYWQN 91

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT-YIEKESSINEQIDRMRHSATRSLLERN 270
           +    F    V +F   +   QP  +     T  +E+  +IN   +  R           
Sbjct: 92  DLAALFGQKRVHFFPDSFK--QPLRFDELNQTNVLERTETINAVSNAAR----------G 139

Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             IV    +    + S E  S+  +++ +G+ ++ + L+  L++ ++ R++     G F 
Sbjct: 140 QVIVTYPEALFERVVSPEVLSKSRIEIAVGEKLDPEFLMDVLIEYKFTREEFVFEPGQFS 199

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           + G  I+IF S   D+ +RV +F +++E I  F PLT    +N+  + I  N +    + 
Sbjct: 200 LRGGIIDIF-SFGNDLPYRVELFDDEVESIRTFNPLTQLSAQNISRVSIVPNINTRFKQE 258

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
              +  + +KE+  + + + +         RL QR   D E    T S
Sbjct: 259 DKVSLFRVLKEDTVIWIRDFQVL-----IDRL-QRCFEDAEKFAKTIS 300



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 76/195 (38%), Gaps = 17/195 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+       +  IIR       P+  E+R      + + + I     +
Sbjct: 731 TLTLTATPIPRTLQFSLMAARDLSIIRTPPPNRQPIHTEVRIFSE--DIIKEAIYYEVNR 788

Query: 582 GLRILLT---VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           G ++      V      E +   L   ++ V   H ++++ +  + + D    ++DVLV 
Sbjct: 789 GGQVFFVHNRVKNLAEVEMMIRRLCP-DVEVASAHGQMESDKLEKTLVDFIDKQYDVLVC 847

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            N++  GLDI     + I +A + G     + L Q  GR  R+              ++ 
Sbjct: 848 TNIIETGLDISNANTMLINNAHQFG----MSDLHQLRGRVGRSNKKAYCYLFSPPMSTLT 903

Query: 699 LAIDETTRRREKQLE 713
                  R+R + LE
Sbjct: 904 S----DARKRLRTLE 914


>gi|223983659|ref|ZP_03633835.1| hypothetical protein HOLDEFILI_01116 [Holdemania filiformis DSM
           12042]
 gi|223964356|gb|EEF68692.1| hypothetical protein HOLDEFILI_01116 [Holdemania filiformis DSM
           12042]
          Length = 1147

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/309 (18%), Positives = 108/309 (34%), Gaps = 26/309 (8%)

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
              +A       RP +++  N   A +L  + K+         F S  +  + EA     
Sbjct: 33  ALILAASYAQNPRPMLIVKNNLYTAQRLAEKLKSLLSPQVCALF-SVEESLRVEAIAASP 91

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIG 300
           +   EK  ++N             LL  +  I V+  S +   + S   +    + LK G
Sbjct: 92  EAMAEKVETLN------------RLLNEDQLICVTHASALVRYLPSPAQFKLCTIVLKTG 139

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
             V   EL  +L+   Y++         F   G  I+I+  + E    R+  F  +I+ I
Sbjct: 140 MDVSMNELKRTLIAAGYQQTARVDQPLCFASRGGIIDIYSINSE-TPVRIEFFDTEIDSI 198

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
             F   T + +      +I   S  +         +  I+E ++  L  L+      E +
Sbjct: 199 RTFDIATQRTLEVKAETEIVPASDLLLDDDQ----ITLIQERVRRHLESLKSRYTHGEYE 254

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
           ++E  I  D+E +        +  Y  YL          +L +Y P+ + +F+       
Sbjct: 255 QIEGIIDLDMETMRAHLRESRLYPYLSYLDDN------SSLIDYCPK-AQVFLSHPDQIK 307

Query: 481 PQISGMYRG 489
             +  +   
Sbjct: 308 THLHQLSEE 316



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 74/199 (37%), Gaps = 13/199 (6%)

Query: 525 TIVVSATPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
            + +SATP    L+        + Q+  P      PV+          V + I     + 
Sbjct: 753 VLSLSATPIPRTLQMSLIGIRSLSQLETPPS-NRMPVQTYVIEKNRSLVKEVIERELARQ 811

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +   ++   + +          H ++   E  E++      + +VL+   
Sbjct: 812 GQVFYLFNNIQEIYNVARQIKQDVPEAEIAVAHGKMSRDEIEEVMMQFTDNEVNVLICTT 871

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+DIP    + I +AD  G  +    L Q  GR  R+     I YA  + +  +  
Sbjct: 872 IIETGIDIPNANTILIENADTFGLAQ----LYQIKGRVGRSDR---IAYAYLMVRP-RKQ 923

Query: 701 IDETTRRREKQLEHNKKHN 719
           ++E  ++R + ++   +  
Sbjct: 924 VNEIAQKRLQAIKEFTELG 942


>gi|218548644|ref|YP_002382435.1| transcription-repair coupling factor [Escherichia fergusonii ATCC
           35469]
 gi|218356185|emb|CAQ88802.1| transcription-repair coupling factor [Escherichia fergusonii ATCC
           35469]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP    D
Sbjct: 119 PHSFLHGHALMMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPM-GSD 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 ----------AFEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|330994820|ref|ZP_08318742.1| Transcription-repair-coupling factor [Gluconacetobacter sp. SXCC-1]
 gi|329758081|gb|EGG74603.1| Transcription-repair-coupling factor [Gluconacetobacter sp. SXCC-1]
          Length = 1160

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 80/487 (16%), Positives = 162/487 (33%), Gaps = 58/487 (11%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           GV      F +A+ +     P + +  +    A++  +     P   +  F         
Sbjct: 19  GVPDGYDAFLLARRLREGPGPVLHVCRDDAGLARVADQLAFVAPDAEILRF--------- 69

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE---RNDCIVVSSVSCIYGIGSVESYS 291
               P  D       S N  I   R +    LLE   R   ++ + +  +  +    +++
Sbjct: 70  ----PGWDCLPYDRVSPNPAIVAERVATLTRLLEKADRPRIVLTTVMGLVQRVAPRAAFA 125

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + +  G+S++   L+  L+   Y R D  + +G F   G   +IFP+  E    R+ 
Sbjct: 126 GQSITITAGESLDAPFLMELLIAHGYNRTDTVMEQGEFATRGGIFDIFPA-GESEPVRLD 184

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +FG+++E I  F P T +    + ++ +   + +      ++            R    +
Sbjct: 185 LFGDEVENIRRFDPGTQRSTAKITSLTMRPVADFSLDPAAISRF----------RTGWRD 234

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             G    +  L Q I+              +E++          E   TL +Y+P  S+ 
Sbjct: 235 LFGPAAASDPLYQHIS-------DGRRHAGMEHWLPLFH-----EQMETLVDYMPGVSIS 282

Query: 472 FVDESHVTIP-QISGMYRGDFHRKATLAEYGF---RLPSCMDNRPLRFEEWNCLRPTTIV 527
             +++   +  ++  +      R+    E       LP       L  + W+ L      
Sbjct: 283 LANQAEEVLATRLEMIADHYDARRQPTREGEVPYRALPP--HLMYLDRKGWDALLVGKKA 340

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
           V   P +   +      ++   RP  +    V           ++ ++   AQ G R  +
Sbjct: 341 VVFMPFA---QPDGAPGMDAGGRPGQMFAKSVT-DGRENVFPMLHAKVEEWAQTGRRAYV 396

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
           T  ++   E +   L E  + V       +     +  + LR G   +L     L  G  
Sbjct: 397 TAWSRGSCERIGVLLREYRLPV-------QGFATWKEAQKLRPGTVGLL--TLGLERGFV 447

Query: 648 IPECGLV 654
                 V
Sbjct: 448 ADNLAFV 454



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 92/269 (34%), Gaps = 38/269 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             + +SATP    L+     + E  +    PT  +     I    + V  + + I     
Sbjct: 756 HVLTLSATPLPRTLQLALTGVREMSLIATPPTDRLAVRTFIMPFDSVV--IREAIQRERF 813

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G ++   V      + +   L E     R +  H  +   E   ++ +   GK+D+L+ 
Sbjct: 814 RGGQVFCVVPRIEDLDRMATRLSEIVPDARLVQAHGRLTPTELERVMTEFSDGKYDILLS 873

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            N++  GLD+P    + I  AD  G  +    L Q  GR  R             T  + 
Sbjct: 874 TNIVESGLDMPAVNTLIIHRADMFGLGQ----LYQLRGRVGRGKQRGYAYLTWPQTHVLS 929

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
            A     +R E                   +M+ +D +       ++        +L   
Sbjct: 930 AA---AQKRLE-------------------VMQTLDTLGAGFTLASHDLDLRGAGNLLGD 967

Query: 759 KGKAHLK----SLRKQMHL-AADNLNFEE 782
           +   H++     L +QM   A  +L  E+
Sbjct: 968 EQSGHIREVGIELYQQMLEDAVADLRTEK 996


>gi|328956088|ref|YP_004373421.1| transcription-repair coupling factor [Coriobacterium glomerans PW2]
 gi|328456412|gb|AEB07606.1| transcription-repair coupling factor [Coriobacterium glomerans PW2]
          Length = 1187

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/342 (17%), Positives = 117/342 (34%), Gaps = 39/342 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  +   +   E   L   V+ S +   +A       RP + +   +  A +       F
Sbjct: 16  IRLIEAALERGEDATLA--VSQSARNLLIAAQFARRPRPTVYIVSGEEAADRAARALTAF 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V  +    D+                 ++ ++     R  A   +   +  I+V+
Sbjct: 74  VGLEHVVRYPERADW-------------PWAATAADDAAVATRCEALGRMARGDAAIMVA 120

Query: 277 SV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           S  S +  +   ES      +  +GD    +++ + LV   Y R     + GTFRV GD+
Sbjct: 121 SARSLLRCVPEPESRYWEEKRFAVGDQFPFEQVPTLLVGMGYARAGAADVAGTFRVHGDA 180

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++IFP+       R+  FG++I+ I     LTGQ I  V+ + I+           +   
Sbjct: 181 VDIFPAQSGS-PVRIEFFGDEIDRIRLMVALTGQTIGEVQEVSIFPCRELALTDDAVRRL 239

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
                               L EA + +  +   LE ++   +   ++     +  R   
Sbjct: 240 HAA-----------------LYEASQGDSELASLLEQVKARIAVPELDRLLPLMYDRT-- 280

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
               +  E++P ++L+ + E        +  Y     R    
Sbjct: 281 ---VSPLEHVPPEALIALSEPRSLFDDCTRAYETIAQRAQDC 319



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 11/196 (5%)

Query: 516 EEWNCLRPT--TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E+   LR     + +SATP    ++    G+    +I        PV +       + V 
Sbjct: 771 EQLKNLREQIDVLTLSATPIPRTMQMAMSGVRDMSLITTPPCGRRPVTVHVGEYDPDTVS 830

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRL 630
             I     +  ++       +  ED  + ++E     R    H ++ + E  E + D   
Sbjct: 831 AAIRFELAREGQVYYVSNRVKTIEDAIDRVHEAAPEARVGVAHGKMSSREVEETMIDFTA 890

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            + DVLV   ++  G+D P    + I DA + G  +    L Q  GR  R+ +     + 
Sbjct: 891 HRIDVLVATTIIESGIDNPHTNTLIIEDAQRLGLAQ----LYQLKGRVGRSASQAFAYFM 946

Query: 691 DTITKSIQLAIDETTR 706
               + +    + T R
Sbjct: 947 FPGEQPLTQ--EATER 960



 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 60/187 (32%), Gaps = 22/187 (11%)

Query: 531 TPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSAR---------TQVEDVYDEINLAA 579
           TP   E+EQ        +QI     +       +             + E          
Sbjct: 618 TPAQLEMEQAFPYEPTRDQIEAIGDIKADMEAPKPMDRLLCGDVGFGKTEVALRAAFKCV 677

Query: 580 QQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             G ++++   T    ++  E L E     +I V  +       E    +     G  DV
Sbjct: 678 DNGYQVMVLCPTTILAQQHYETLFERFAPFDIEVEVLSRFRTPSELSAALAGFSDGSVDV 737

Query: 636 LVGINLLREGLDIPE-CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           LVG + L      P   GLV I +  + G    +        +  R     + L A  I 
Sbjct: 738 LVGTHRLLSSDVNPHSLGLVIIDEEQRFGVQHKEQL------KNLREQIDVLTLSATPIP 791

Query: 695 KSIQLAI 701
           +++Q+A+
Sbjct: 792 RTMQMAM 798


>gi|293391342|ref|ZP_06635676.1| transcription-repair coupling factor [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951876|gb|EFE01995.1| transcription-repair coupling factor [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 1152

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 119/330 (36%), Gaps = 35/330 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
              ++L  +     +  ++++   +    +V+  +   A +L  E K   P         
Sbjct: 15  NDHKILANILPGADSLAISEIAAQLDGLTVVVTNDTRSAVRLEKELKQLAPSE------- 67

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGS 286
                Q   + P  +T      S ++ I   R SA   L +R   I +  V+ +   +  
Sbjct: 68  ---LLQNVTFFPDWETLPYDSFSPHQDIIFARLSALFHLQQRKQGIFILPVTTLMQRVCP 124

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                  ++ +  GD    + L   L K  Y+  +  +  G + V G  +++FP    + 
Sbjct: 125 PFYLQHNVLLINKGDRFLIESLRLQLEKAGYRAVEQVLEHGEYAVRGALLDLFPMGSAE- 183

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ I  F   T + ++ ++ I +     +    PT +T +++ + + +  
Sbjct: 184 PFRLDFFDDEIDSIRTFDVDTQRTLQEIDQINLLPAHEF----PTDSTGIEFFRSQFR-- 237

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             E  +  R  E         +  + +        IE +          E   TLF+Y P
Sbjct: 238 -AEFGEIRRDPE---------HIYQQVSKGTLAAGIEYWQPLFF-----EQMATLFDYFP 282

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
            ++L    E +    Q    Y     R  +
Sbjct: 283 ANTLFITAEQNQ--AQGERFYTDAQQRFES 310



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +D+   + I     +G
Sbjct: 757 ILTLTATPIPRTLNMAMNGIRDLSIIST-PPARRLTIKTFVRQTDDLVIREAILREILRG 815

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R    H +++  E   ++ D    +++VLV   
Sbjct: 816 GQVYYLHNDVASIENTAEKLTALVPEARVTVGHGQMRERELERVMSDFYHQRYNVLVCST 875

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +  
Sbjct: 876 IIETGIDVPTANTIIIERADNFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKLMTK 930



 Score = 37.4 bits (85), Expect = 9.4,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 4/146 (2%)

Query: 81  QSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITF 140
                 +    +  SE       +A  ++      LL         + +S     ++   
Sbjct: 539 VGGSDETAPLHKLGSEAWGKARSKAAEKIRDVAAELLDVYAQREAQKGFSFQYDREEFQQ 598

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPA 196
           F     +  + DQ  AI  ++  +   +   +L+ G  G GKT      A +     +  
Sbjct: 599 FTATFPFEETHDQLMAINAVISDMTQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQV 658

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAV 222
            V+ P  +LA Q +  FK+ F +  V
Sbjct: 659 AVLVPTTLLAQQHFDNFKDRFANLPV 684


>gi|281178224|dbj|BAI54554.1| transcription-repair coupling factor [Escherichia coli SE15]
          Length = 1148

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|237731096|ref|ZP_04561577.1| transcription-repair coupling factor [Citrobacter sp. 30_2]
 gi|226906635|gb|EEH92553.1| transcription-repair coupling factor [Citrobacter sp. 30_2]
          Length = 1148

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 122/310 (39%), Gaps = 36/310 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + ++   Q  LG +TG+     +A++ E    P +++AP+   A +L+ E + F   + +
Sbjct: 9   LPAKAGDQRQLGELTGAACATLVAEIAEHHAGPVVLIAPDMQNALRLHDEIRQFT--DQM 66

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
              ++ ++    +++ P  +    + S++ +     R             ++V   + + 
Sbjct: 67  VMNLADWETLPYDSFSPHQEIISSRLSTLYQLPAMQR-----------GVLIVPVNTLMQ 115

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +          + +K G  + +  L   L    Y+  D  +  G +   G  +++FP  
Sbjct: 116 RVCPHSYLHGHALVMKKGQRLSRDALREQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E + +R+  F ++I+ +  F   T + +  V+ I +     +    PT  TA++  + +
Sbjct: 176 SE-LPYRLDFFDDEIDSLRLFDTDTQRTLEEVDAINLLPAHEF----PTDKTAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I    + +        IE +          EP P LF
Sbjct: 231 WRDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLF 273

Query: 463 EYIPEDSLLF 472
            Y P ++LL 
Sbjct: 274 SYFPANTLLV 283



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDNLV--VREAILREVLR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ A+ L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLFNDVENIQKTADRLAELVPEARIGIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|153818854|ref|ZP_01971521.1| transcription-repair coupling factor [Vibrio cholerae NCTC 8457]
 gi|126510582|gb|EAZ73176.1| transcription-repair coupling factor [Vibrio cholerae NCTC 8457]
          Length = 438

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 110/298 (36%), Gaps = 36/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+     +A++  A     ++  P+   A +L  E    F H+ V  F  + +    +
Sbjct: 24  LHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEV-EQFSHSEVALFPDW-ETLPYD 81

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D        I+++I R+     +         +V   + +      +   Q  +
Sbjct: 82  NFSPHQDI-------ISDRISRL----YQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTL 130

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  F +
Sbjct: 131 IVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDFFDD 189

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F P   + I  ++ I++     +    PT   A++  +   + R         
Sbjct: 190 EIDTIRTFDPDNQRSIAEMDEIRLLPAHEF----PTTAAAIEEFRNRWRQR--------- 236

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
             EA+R  + +      +        IE +          E   TLF+Y+P +S L V
Sbjct: 237 -FEARREPESV---YSQVSKGTWPAGIEYWQPLFF-----EHSETLFDYLPANSQLLV 285


>gi|289664638|ref|ZP_06486219.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 1154

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 103/292 (35%), Gaps = 34/292 (11%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           + +   +++A+  EA   P +V+A +   A Q+ ++       +A            P  
Sbjct: 26  SPTALAWSIARAAEAHAGPLLVIARDNQSAHQIEADLHALRGEHAAL----------PVV 75

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIV 295
             P  +T    + S + +I   R +A   L      +V+  V   +  +  +        
Sbjct: 76  PFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTRGVVIVPVQTLLQQLAPLSYIVGGSF 135

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L +G  ++       L    Y+     +  G F V G  +++FP    D   R  +   
Sbjct: 136 DLTVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPM-GADTPLRFELLDE 194

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ I  F P + + +  V+ +K+           ++   +      L+ R         
Sbjct: 195 DIDSIRVFDPESQRSLDKVDAVKMLPGREVPMDDASVERVLAC----LRERFD------- 243

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                 ++ R +   + L++  +   IE Y      +       TLF+Y+ +
Sbjct: 244 ------VDTRRSALYQDLKSGLAPSGIEYYLPMFFAKT-----ATLFDYLDK 284



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I +   H ++   E  +++ D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRDLSELVPEARIGIA--HGQMPERELEQVMLDFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +S+
Sbjct: 890 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVVPDRRSM 930


>gi|324113535|gb|EGC07510.1| transcription-repair coupling protein [Escherichia fergusonii B253]
          Length = 1148

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP    D
Sbjct: 119 PHSFLHGHALMMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPM-GSD 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|152980432|ref|YP_001353098.1| transcription-repair coupling factor [Janthinobacterium sp.
           Marseille]
 gi|151280509|gb|ABR88919.1| transcription-repair coupling factor (superfamily II helicase)
           [Janthinobacterium sp. Marseille]
          Length = 1147

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 69/454 (15%), Positives = 147/454 (32%), Gaps = 54/454 (11%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ---RPAIVMAPNKILAAQLYSEFKN 215
            L K +       +L  V GS   F +A+    ++   R   V+  N   A +L +E   
Sbjct: 4   DLKKSLPKPATRFVLPPVHGSADAFVLAQAAAELKSQKRMLTVVVANASDAQRLLAEI-P 62

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIV 274
           +F     E              +P  +T      S ++ +   R +    +L      ++
Sbjct: 63  WFGSEPNELRC---------HLLPDWETLPYDAFSPHQDLVSERLATLYEVLNGQCDVLI 113

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           V + + +  +      +      K G+++++ +L + L    Y      +  G + V G 
Sbjct: 114 VPATTALVRMAPPAFLASYTFFFKQGETLDEAKLKAQLQLAGYSPVKQVMSPGEYSVRGG 173

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I+I+P     + +R+ +FG+ I+ I  F   + + +  V+ +++     +         
Sbjct: 174 LIDIYPM-GSVLPYRIDLFGDTIDSIRTFDADSQRSLYPVKEVRLLPAREFPMDEEARTA 232

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
                              GR  E    +   +   + + +  +   IE Y         
Sbjct: 233 F-----------------RGRWREIFEGDPSRSVIYKDIGSGIASAGIEYYLPLFF---- 271

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
            E   TLF+Y+P D+   +         I   +     R   L     R     +   L 
Sbjct: 272 -EQTNTLFDYLPADTTFALIGD--IEAAIKRFWDDTQSRYRFLKSDRERPILAPEQIFLS 328

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            E +  L           G W ++       + +        P + +       + + + 
Sbjct: 329 DENFFTLAKPY-------GRWIIQN------QDVASELSAPLPNIAVNRRAD--DPLVNL 373

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
                Q   R+++   +    E L +Y  E ++ 
Sbjct: 374 RAYLLQTDKRVMICAESNGRRETLQQYFNEYDLP 407



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 20/198 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    II   P   +     +RS    V  + +      ++
Sbjct: 755 VLTLTATPIPRTLGMALEGLRDFSIIATAPQKRLAIKTFVRSENDSV--IREACLRELKR 812

Query: 582 GLRILLT---VLT-KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T +     L E + E  I V   H ++   +   I+RD    +F++L+
Sbjct: 813 GGQVYFLHNEVETIQNRKAMLEELMPEARIGVA--HGQLHERDLERIMRDFVAQRFNILL 870

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +     YA  +   +
Sbjct: 871 CTTIIETGIDVPTANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLVHDV 923

Query: 698 QLAIDETTRRRE--KQLE 713
           Q       RR +  +Q+E
Sbjct: 924 QGLSKLAQRRLDAIQQME 941


>gi|126462211|ref|YP_001043325.1| transcription-repair coupling factor [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103875|gb|ABN76553.1| transcription-repair coupling factor [Rhodobacter sphaeroides ATCC
           17029]
          Length = 1165

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 84/512 (16%), Positives = 168/512 (32%), Gaps = 73/512 (14%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
                 LL G         +AK ++    P I +A +      + +      P   V   
Sbjct: 2   QNGTRILLGGAPEGYDARLVAKELDRGA-PVIHVARDDKRLEAMRTALAVMAPRAVVL-- 58

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV---SSVSCIY 282
                       +P  D       S N +I   R +   +L        V   +  +   
Sbjct: 59  -----------ELPAWDCLPYDRVSPNPEISARRMATLAALAHGMPGAFVLLTTLNAATQ 107

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            I + E         ++GD V+++ L S L +  +   D     G + + G  ++I+P  
Sbjct: 108 RIPAREVLRAASFSARVGDRVDEERLRSYLARMGFSLTDTVTEPGDYAIRGGIVDIYPPG 167

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
           +     R+  FG+ ++    F P T + +  ++ +++   S  +     +    +  + E
Sbjct: 168 VAG-PVRLDFFGDVLDGARRFDPETQRTVEKLDLVELAPVSEVMLDEGAITRFRQNYRIE 226

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
                      G                E +      Q +E++  +   R       TLF
Sbjct: 227 -------FGAAGTD----------DPLYEAVSAGRKHQGMEHWLPFFHARLE-----TLF 264

Query: 463 EYIPEDSLLFVDE-SHVTIPQISGMYRGDFHRKATLAEYGFRL-----PSCMDNRPLRFE 516
           +Y+PE S++  D+ +   I +  G+      R+  +   G RL     P+  D   L   
Sbjct: 265 DYLPEASVMLDDQVTPARISRWEGIADQYDARREAMTAKG-RLDTVYKPAAPDLLYLDEA 323

Query: 517 EWNC-----LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            W              ++ +PG   L+   G +           +    I      V+ V
Sbjct: 324 AWEAAVAGHRVIQLSPLAQSPGPGVLD-AGGRMGRSFAPERQAEN----ISLFGALVDHV 378

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                   ++  ++++   ++   E L   L E  ++   +  ++         RD+  G
Sbjct: 379 -----CRLREDRQVVIASWSEGARERLKGLLEEAGLQGTKLAQDI---------RDVPEG 424

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +    + +  L +G   P  GL  I + D  G
Sbjct: 425 RGGTHLMVWALEQGFTAP--GLAVISEQDVLG 454



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 91/259 (35%), Gaps = 37/259 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 754 HVLTLTATPIPRTLQLSLTGVRDLSIIATPPVDRLA-IRTYVSEFDTVTIREALLRERYR 812

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       D+  +L +    V Y+  H ++   E  E +     GKFDVL+  
Sbjct: 813 GGQSFFVVPRLSDLPDMEAFLRDHVPEVSYVVAHGQLAAGELDERMNAFYDGKFDVLLAT 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R                +  
Sbjct: 873 TIVESGLDIPTANTMIVHRADMFGLSQ----LYQIRGRVGRAKTRAYCYLTTKPRAPL-- 926

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                                 PQ++K  +++  +D +       ++        +L  +
Sbjct: 927 ---------------------TPQAIKRLRLLASLDSLGAGFNLASHDLDLRGAGNLLGE 965

Query: 759 KGKAHLK----SLRKQMHL 773
           +   H+K     L +QM  
Sbjct: 966 EQSGHIKEVGYELYQQMLE 984



 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            Y  + DQ +AIA ++K + S     +L++G  G GKT      A V         V+ P
Sbjct: 602 PYQETDDQLSAIADVVKDLESGSPMDRLVVGDVGFGKTEVAMRAAFVAALAGMQVAVICP 661

Query: 202 NKILAAQLYSEFKNFF 217
             +LA Q +  F   F
Sbjct: 662 TTLLARQHFRSFAERF 677


>gi|323175654|gb|EFZ61248.1| transcription-repair coupling factor [Escherichia coli 1180]
          Length = 1148

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P ++++P+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLISPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|281600530|gb|ADA73514.1| Transcription-repair coupling factor [Shigella flexneri 2002017]
          Length = 1169

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 33  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 91

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 92  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GILIVPVNTLMQRVC 139

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 140 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 198

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 199 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 254

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 255 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 297

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 298 PANTLLV 304



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 772 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 829

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 830 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 887

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 888 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 943


>gi|77165119|ref|YP_343644.1| transcription-repair coupling factor [Nitrosococcus oceani ATCC
           19707]
 gi|254433553|ref|ZP_05047061.1| transcription-repair coupling factor [Nitrosococcus oceani AFC27]
 gi|76883433|gb|ABA58114.1| transcription-repair coupling factor [Nitrosococcus oceani ATCC
           19707]
 gi|207089886|gb|EDZ67157.1| transcription-repair coupling factor [Nitrosococcus oceani AFC27]
          Length = 1158

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 116/347 (33%), Gaps = 39/347 (11%)

Query: 154 PAAI--AQLLKGIHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLY 210
           P A+  A L   +  +       G + GS     +A        P +V+ P+ I A +L 
Sbjct: 2   PPALNLASLAPVLPRQAGDHHRFGQLYGSSFGLVLAASAYYHPGPILVITPDTITANRLE 61

Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270
            E +          F        P  + P  +T      S ++ I   R +    L    
Sbjct: 62  DELR----------FYRNGQEDSPILHFPDWETLPYDTFSPHQDILSERLATLYQLPRLE 111

Query: 271 DCIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
             I++  VS +   +   E      + +  GD +  +     L K  Y+     +  G F
Sbjct: 112 RGILIVPVSTLMQRLAPQEYLETHSLLVATGDHLHLENWRKQLEKGGYRCVSQVMEHGEF 171

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
            + G  I++FP     + +R+ +F N+++ +  F P T + +++V  I++     +    
Sbjct: 172 AIRGSLIDLFPM-GSTLPYRIDLFDNEVDSLRSFDPETQRSLQSVAQIQLLPAREFPLVE 230

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
            T+    K        R        R L               +        IE Y    
Sbjct: 231 ETITRFRKNY------RGAFNGDPQRSL-----------IYREVSEGHPFPGIEYYLSLF 273

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
                 +   TLF+Y+P ++L    E   T  +    +R    R   
Sbjct: 274 F-----DHTDTLFDYLPNNTLAVTVEGVNTTAE--SFWREINARYEQ 313



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 70/179 (39%), Gaps = 13/179 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q  D  + + +    ++G
Sbjct: 761 ILTLTATPIPRTLHMSLSNLRDLSIIATPPARRLA-IKTFVRQWNDNLLREALLREIKRG 819

Query: 583 LRILLT---VLTKR-MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++      V +   MA+ +     E  + +   H +++  E  +++ +    +F+VL+ 
Sbjct: 820 GQVYFLHNEVESINKMAQRVQTLFPEAKVGIA--HGQMRERELEQVMLNFYHRRFNVLIC 877

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             +
Sbjct: 878 TTIIETGIDIPSANTIIIHRADKLGLAQ----LYQLRGRVGRSHHRAYAYLIVPPRSVM 932



 Score = 39.3 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFTMAK---VIEAMQRPAIVMAP 201
            +  + DQ  AI  ++  + S +   +L+ G  G GKT    +   ++    +   V+ P
Sbjct: 608 PFEETPDQADAIQAVIADLTSDQPMDRLVCGDVGFGKTEVAMRATFIVSQAGKQVAVLVP 667

Query: 202 NKILAAQLYSEFKNFF--PHNAVEYFVSYYDYYQPEAYV 238
             +LA Q Y  FK+ F      VE    +    + EA +
Sbjct: 668 TTLLAQQHYQSFKDRFADWPARVEVISRFRSRKEQEAVI 706


>gi|296169893|ref|ZP_06851505.1| transcription-repair coupling factor [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895449|gb|EFG75151.1| transcription-repair coupling factor [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 1201

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 93/516 (18%), Positives = 177/516 (34%), Gaps = 56/516 (10%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             QL++    R     L+G   S +   +A  +  +  P +V+      A  L +E +  
Sbjct: 8   FQQLIESAADRPPELHLVGPA-SAR-LFVASALARLG-PLLVVTATGREADDLTAELRGV 64

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           F   AV  F S+ +    E   P  DT   + +     + R+ H     L      +VV+
Sbjct: 65  FGD-AVAAFPSW-ETLPHERLSPGVDTVGTRLTV----LRRLAHPEDARL-GPPLRVVVT 117

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           +V  +    + +      V   +G  +  +E+++ LV+  Y R D+   RG F V G  +
Sbjct: 118 AVRSLLQPMTPQLGLVEPVTFSVGQEMAFEEVVARLVELAYTRVDMVGRRGEFAVRGGIL 177

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR--NVETIKIYANSHYVTPRPTLNT 394
           ++FP   E    R+  +G+++ E+  F     + I    VET+   A    +        
Sbjct: 178 DVFPPTAE-HPVRIEFWGDEVSEMRMFAVADQRSIPEIEVETVIAVACRELLLSDDVRER 236

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A                          +   +T  L  L    +   +E     L    P
Sbjct: 237 AAA-------------LAARHSGAEPAITGSVTDMLAKLAEGIAVDGMEALLPVL---RP 280

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
           GE    L + + + + + + +      ++           +   E  + + +   + P+ 
Sbjct: 281 GEH-VLLTDQLAQGTPVLLCDP----EKVRTRAADLIKTGSEFLEASWSVAALGTDAPVD 335

Query: 515 FEEWNCLRPTTI----VVSATPGS--WELEQ-CQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
             ++     T +      +AT G   W L Q      VE  IR           R  +  
Sbjct: 336 VAQFGGSGFTELEDVRAAAATSGHPWWTLSQLSDESAVELDIRAAPSA------RGHQHD 389

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +++++  +      G    +       A  + E L + +     +  +            
Sbjct: 390 IDEIFAMLRAHVSTGGYAAVVAPGIGTAHRVVERLADSDTPATMLEPDAADTT------- 442

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           L+ G   VL G   L +G+ +P   LV I + D  G
Sbjct: 443 LKPGVVCVLKGP--LHDGVVVPGANLVVITETDLTG 476



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E     T V   +D      L  + 
Sbjct: 778 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGPQDDKQVAAALRREL 833

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +     + E     R +  H ++        ++     ++D+LV
Sbjct: 834 LRDGQVFYVHNRVSSIDRTAARIRELVPEARVVVAHGQMPEERLERTVQGFWNREYDILV 893

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +        
Sbjct: 894 CTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPPHAP- 948

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N +  
Sbjct: 949 ---LTETAYDRLATIAQNNELG 967


>gi|110805128|ref|YP_688648.1| transcription-repair coupling factor [Shigella flexneri 5 str.
           8401]
 gi|110614676|gb|ABF03343.1| transcription-repair coupling factor [Shigella flexneri 5 str.
           8401]
          Length = 1169

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 33  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 91

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 92  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GILIVPVNTLMQRVC 139

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 140 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 198

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 199 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 254

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 255 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 297

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 298 PANTLLV 304



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 772 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 829

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 830 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 887

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 888 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 943


>gi|30062647|ref|NP_836818.1| transcription-repair coupling factor [Shigella flexneri 2a str.
           2457T]
 gi|30040893|gb|AAP16624.1| transcription-repair coupling factor [Shigella flexneri 2a str.
           2457T]
 gi|313650430|gb|EFS14837.1| transcription-repair coupling factor [Shigella flexneri 2a str.
           2457T]
 gi|332758277|gb|EGJ88600.1| transcription-repair coupling factor [Shigella flexneri 4343-70]
 gi|332759433|gb|EGJ89741.1| transcription-repair coupling factor [Shigella flexneri 2747-71]
 gi|332761054|gb|EGJ91341.1| transcription-repair coupling factor [Shigella flexneri K-671]
 gi|332767336|gb|EGJ97530.1| transcription-repair coupling factor [Shigella flexneri 2930-71]
 gi|333005518|gb|EGK25036.1| transcription-repair coupling factor [Shigella flexneri K-218]
 gi|333019350|gb|EGK38633.1| transcription-repair coupling factor [Shigella flexneri K-304]
          Length = 1148

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GILIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|13470979|ref|NP_102548.1| transcription repair coupling factor [Mesorhizobium loti
           MAFF303099]
 gi|14021722|dbj|BAB48334.1| transcription repair coupling factor [Mesorhizobium loti
           MAFF303099]
          Length = 1165

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 85/534 (15%), Positives = 176/534 (32%), Gaps = 66/534 (12%)

Query: 163 GIHSREKVQLLL-GVTGS--GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           G+      Q ++ GV           A +  A  +P + +A +      +        P 
Sbjct: 8   GLPKGRAGQFIVDGVADGYEAFALVQAALEIAPDKPVLFVARDGQRLPVIIEALAFAAPG 67

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV--SS 277
             V    ++ D    +   P +D   ++  +          +A  +L ++    V+  ++
Sbjct: 68  LPVLELPAW-DCLPYDRVSPGSDAAAKRLDA---------LTAMIALAKKPHRAVILTTA 117

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            + +  I   +         + G+ ++   L++ L    ++R       G F V G  ++
Sbjct: 118 NALLQRIPPADLVEAQTFHARPGNQIDMNALIARLETSGFERVPTVRGIGEFAVRGGILD 177

Query: 338 IF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +F P   E  A R+  FG+ +E I  F   T +     +++ + A S       T++   
Sbjct: 178 LFAPGWAE--ALRLDFFGDTLESIRVFDAATQRTTGQRKSMALQAMSEVALTPETISRF- 234

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
                    R   +E  G         QR       +        +E++  +       E
Sbjct: 235 ---------RRSYIEAFGAP-------QRDDGLYAAVSEGRRFAGMEHWLPFFY-----E 273

Query: 457 PPPTLFEYIPEDSLLFVDESHVTI-PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
              T+F+Y+P+  ++F   +H  +  + + +      RK    +    L   +  +P+  
Sbjct: 274 RLETVFDYLPDTPVVFDHLAHEALAERHTLILDHYEARKK---QADAALKDAVPYKPVAP 330

Query: 516 EEWNCLRPTTIVVSATPG------SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           +    L P  ++ S  P        ++        V       G               +
Sbjct: 331 DLLY-LSPENLIASLGPREAIDFTPFDAPDAGAKKVYHAGSRHGRSFVEERADPNVNVFD 389

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            V   I        RI++   T+   + L + L E ++        +K +E +     L 
Sbjct: 390 VVVRHIADERAARRRIVIAGWTEGSLDRLGQILAEHHL------GNLKQVETLAEAEQLD 443

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            G+  + V    L  G +     LV + + D  G       LI+   R  R  +
Sbjct: 444 PGQAALAVLP--LESGFETE--RLVVVAEQDILG-----DRLIRRSKRKKRASD 488



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 768 HVLTLSATPIPRTLQLALTGVRELSLIATPPVDRMA-VRTFISPFDPLVIRETLLRERYR 826

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G      V       ++ E+L E    ++V   H ++   E  +I+     G++DVL+  
Sbjct: 827 GGHSFYVVPRISDLSEIHEFLKESVPELKVAVAHGQMPPGELDDIMNAFYDGQYDVLLST 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + I  AD  G  +    L Q  GR  R   SKV  YA     + + 
Sbjct: 887 TIVESGLDIPTANTLIIHRADMFGLSQ----LYQLRGRVGR---SKVRAYALFTLPANRK 939

Query: 700 AIDETTRRREK 710
             D   RR + 
Sbjct: 940 LTDTAERRLKV 950


>gi|320530140|ref|ZP_08031210.1| transcription-repair coupling factor [Selenomonas artemidis F0399]
 gi|320137573|gb|EFW29485.1| transcription-repair coupling factor [Selenomonas artemidis F0399]
          Length = 1094

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 145/415 (34%), Gaps = 52/415 (12%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+ +L + + S+ +  L  G  GS K   +A   +   RP  ++   +        +  
Sbjct: 12  PAVRKLSEELASQPQQILAHGCAGSLKHAALAAAYDGTPRPLAIVTAGRESLRAWQEDLT 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR--MRHSATRSLLERNDC 272
              P   V               +P  D  +       + ++R   R +    LL R   
Sbjct: 72  ALLPEADVY-------------ELPELDYALAAVQGAAKGMERAAQRMNILGRLLRREPI 118

Query: 273 IVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV++ +      G S   +S+  + L++GD++ ++ELL+ +V   Y+        G F V
Sbjct: 119 IVLADIGAAAQKGLSAAEFSRASLSLRLGDTLVREELLARMVGMGYEHAAEVEHVGQFSV 178

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP- 390
            G  ++IFP +      R+  F  +I+ + E+  +T + I+N+ T  I            
Sbjct: 179 RGGIVDIFPINALS-PIRIEFFDAEIDSMREYDAVTRRSIKNISTASIMPLRAADDEGEA 237

Query: 391 ---TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
              +   A      +   RLI    +    +A R   RI +  E L   G+    E +  
Sbjct: 238 CFLSYLGATGITVFDEPTRLITALHDAVQEDAAR-AARI-FSWEELVAEGA-AGHELFVS 294

Query: 448 YLTGRNPGEPPPTLFEY-------IPEDSLLFVDESHVTIPQISG--MYRGDFHRKATLA 498
            ++ +     P  L  +             L   E    + Q +   +  G   R   L 
Sbjct: 295 LMSRKLLACAPRVLIPFQMVPMTAFRRQFTLLESELRRYLAQQARVLVLAGGSERANLLR 354

Query: 499 EY--GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
           +   G++LP+ +  R                  ATP   E+    G +      P
Sbjct: 355 DMLAGWKLPAALLRRE-----------------ATPAPGEISVAGGALRAGFELP 392



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 69/192 (35%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     G     II        PV+     +    +   I     +  
Sbjct: 703 VLTLSATPIPRTLHMSLAGARDMSIIETPPADRLPVQSYVVESSDAMMRGAIERELSRKG 762

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + + E+L       R    H ++      +++ D   G +D+L+  ++
Sbjct: 763 QVYFIYNRVESIDRMREHLLRLVPEARIATAHGQMNEDILEQVMMDFYEGHYDILLATSI 822

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+     V I DAD+ G  +    L Q  GR  R+       +     K     +
Sbjct: 823 IENGIDVANANTVIIYDADRFGLSQ----LYQMRGRVGRSAKMAFAYFTYRRDK----VL 874

Query: 702 DETTRRREKQLE 713
            ET  +R + ++
Sbjct: 875 SETAEKRLQAMK 886


>gi|157146181|ref|YP_001453500.1| transcription-repair coupling factor [Citrobacter koseri ATCC
           BAA-895]
 gi|157083386|gb|ABV13064.1| hypothetical protein CKO_01937 [Citrobacter koseri ATCC BAA-895]
          Length = 1148

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 122/310 (39%), Gaps = 36/310 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + ++   Q  LG +TG+     +A++ E    P +++AP+   A +L+ E + F   + +
Sbjct: 9   LPTKPGDQRQLGELTGAACATLVAEIAERHAGPIVLIAPDMQNALRLHDEVRQFT--DQL 66

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
              ++ ++    +++ P  +    + S++ +     R             ++V   + + 
Sbjct: 67  VMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQ 115

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +          + +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 116 RVCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E   +R+  F ++I+ +  F   T + +  V+ I +     +    PT  TA++  + +
Sbjct: 176 SE-QPYRLDFFDDEIDSLRLFDADTQRTLEEVDAINLLPAHEF----PTDKTAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I    + +        IE +          EP P LF
Sbjct: 231 WRDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLF----FNEPLPPLF 273

Query: 463 EYIPEDSLLF 472
            Y P ++LL 
Sbjct: 274 SYFPANTLLV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDNLV--VREAILREVLR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ A+ L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAADRLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|254420843|ref|ZP_05034567.1| transcription-repair coupling factor [Brevundimonas sp. BAL3]
 gi|196187020|gb|EDX81996.1| transcription-repair coupling factor [Brevundimonas sp. BAL3]
          Length = 1156

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 88/509 (17%), Positives = 154/509 (30%), Gaps = 76/509 (14%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G         +A+ I+A     + +A +   +      F+ F     +  +       
Sbjct: 15  LGGAPEGLDALVVAERIKASGGVGVFVARDYQRSGGFVQAFRFFSQDIEILEY------- 67

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN----DCIVVSSVSCIYGIGSVE 288
                 P  D       S    I   R +    L +R       +VV++V         +
Sbjct: 68  ------PAWDCLPYDRLSPTAGIAAQRMATLTRLAQRKTGDAPVLVVTTVGAAMQRTPPK 121

Query: 289 SYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           S + Q   + K+G  ++ + L        Y R      RG F V G  ++++P   E+  
Sbjct: 122 SVTTQAGFETKVGRDLDIQALERYFAANGYVRASTVSERGEFAVRGGVVDVYPPGFEE-P 180

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+ MFG+++E I  F P T +    +  + +   S  +     ++             L
Sbjct: 181 VRLDMFGSELESIRTFDPETQRSTGQMTAVSLAPVSEALLDADAISRFRTG-------YL 233

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                 G                  +      Q +E +          E   +LF+Y+P+
Sbjct: 234 KLFGAPGD-----------DPLYATISEGARRQGMEQWLPLFY-----ETLDSLFDYLPD 277

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHR---KATLAEYGFRLPSCMDNRPLRFE-------E 517
            + +F+D    +          D +    +A  A+ G        NR L          +
Sbjct: 278 QAQIFLDNQAESARAERWDLIADAYEGRTEAAKAQKGKGGGHAATNRALPPRSLYLDAGD 337

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           WN       V   TP S   E   G +                 + +    E V      
Sbjct: 338 WNQALAGRAVRRFTPFSGGGEDAGGRLGRTFAAERA--------QDSVNLFEAVAAHAAA 389

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERN---IRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               G R+L    T+  +E L   L +     I      ++V+T  +   +R    G   
Sbjct: 390 LKADGKRVLFASWTEGSSERLATMLADHGLDHIVAVRDWADVQTAPKDLYLR----GVLP 445

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEG 663
           V         G    E     I + D  G
Sbjct: 446 V-------EHGFATDEV--AVISETDILG 465



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 100/290 (34%), Gaps = 49/290 (16%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + ++ATP    L+     I E  I  T  VD    +R+  T  + V   + +     +
Sbjct: 759  HLLTLTATPIPRTLQMALSGIREMSIIATPPVDRLA-VRTYVTPWDPVLVREALLREKYR 817

Query: 582  GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +        +    + ++L E+   V+++  H ++   +  E++     G++DVLV  
Sbjct: 818  GGQAYYVAPRLKDLPAIEKFLREQVPEVKFVVGHGQMSATQLEEVMSAFYDGEYDVLVST 877

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+             K + L
Sbjct: 878  TIVESGLDIPTANTLVVHRADMFGLAQ----LYQIRGRVGRSKARAFAYLTTDAVKPMTL 933

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
            + +     R  Q                 +++ +D +       ++        +L   +
Sbjct: 934  SAE-----RRLQ-----------------VLQSLDNLGAGFQLASHDLDQRGGGNLLGDE 971

Query: 760  GKAHLK----SLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
               H++     L +QM                D +  L+       +D  
Sbjct: 972  QSGHIREVGVELYQQMLE--------------DAVAELREKGEGLNVDRG 1007



 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 54/154 (35%), Gaps = 16/154 (10%)

Query: 73  ASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSIN 132
           +   +           ++++  +++ +    + L   + +   L +   +  P       
Sbjct: 546 SEGAQLDRLGGAGWQARKSK--AKERLRAMAEGL-IALAAKRALRETDAVVPPP------ 596

Query: 133 NHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKV 188
                   F  +  Y  + DQ  AI  +L+ +       +L+ G  G GKT      A V
Sbjct: 597 ---GLFAEFCARFPYEETDDQLNAIGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFV 653

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           +    +   ++AP  +LA Q Y  F   F    V
Sbjct: 654 VAMTGQQVAIVAPTTLLARQHYKTFTERFAGWPV 687


>gi|332674949|gb|AEE71765.1| transcription-repair-coupling factor [Propionibacterium acnes 266]
          Length = 1222

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 85/469 (18%), Positives = 154/469 (32%), Gaps = 68/469 (14%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++      A +  +  K +   +AV Y+ S+ +    E   PRTDT   +   +   
Sbjct: 84  PVLLVTSTFREAEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLR-- 140

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
               R   T         +VV+ V  +             V+L +G+  +  EL + LV 
Sbjct: 141 ----RLCGTEG---EVPQVVVAPVRSLLQPQVAGLGRVAPVRLAVGEEHDLTELATELVN 193

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R D+   RG F V G  +++FP  LE    R+  FG++IEE++ F     +     
Sbjct: 194 AAYSRVDMVERRGEFAVRGGIVDVFPPVLE-HPVRIDFFGDEIEEMTSFAVADQRSTDET 252

Query: 375 ETIKIY-ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
               I       +      + A        K  L +  +   +LE              +
Sbjct: 253 HQELICAPCRELILTDEVRSRA--------KALLTDHPELADMLER-------------I 291

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
               + + +E     L           L + +PE +++ + +  +   + + + R     
Sbjct: 292 GNGQAVEGMEALMPALVDEMEL-----LVDVLPEHAMVVLSDPEMVRSRAADLVRTSEEF 346

Query: 494 KA--------------TLAEYGFR-LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
                            LA  G+R L     +   R   W  +   ++  SAT     L 
Sbjct: 347 LGAGWAAAAGGGQAPIDLAASGYRSLAQVRSHCLERGMAWWSMSSFSLDSSAT---DVLV 403

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
                   Q + P       V +      VE    ++      G  +LL    + MA+ +
Sbjct: 404 DDDITSAPQTVNPQ-----LVAVEPWHGDVEAAVKDLTARLDDGWTVLLCAEGEGMAKRM 458

Query: 599 TEYLYERNIRVRYMHS-------EVKTLERIEIIRDLRLGKFDVLVGIN 640
           +E L E N+  R +             + R+            +LV   
Sbjct: 459 SELLGEHNVAARLVDDVDPDATEPCVQVIRLHQRHGFAAESVKLLVAST 507



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 64/205 (31%), Gaps = 25/205 (12%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--------RTQVEDVYDEIN 576
             + +SATP    LE     I E     T    PP E              QV      I 
Sbjct: 815  VLAMSATPIPRTLEMAVTGIREMSTIAT----PPEERHPVLTFAGPYDEGQV---VAAIR 867

Query: 577  LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
                +  ++       +  E     L E     R +  H ++   +  +I+ D      D
Sbjct: 868  RELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQLEQIMVDFWERHAD 927

Query: 635  VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
            VLV   ++  G+DI     + I  AD  G  +    L Q  GR  R+       +     
Sbjct: 928  VLVCTTIVESGIDISTANTLLIDRADLMGLSQ----LHQLRGRVGRSRERGYAYFLYPAD 983

Query: 695  KSIQLAIDETTRRREKQLEHNKKHN 719
            K     + +T   R   +  +    
Sbjct: 984  KP----LSQTAHDRLATMAAHTDLG 1004


>gi|226365233|ref|YP_002783016.1| transcription-repair coupling factor [Rhodococcus opacus B4]
 gi|226243723|dbj|BAH54071.1| transcription-repair coupling factor [Rhodococcus opacus B4]
          Length = 1215

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 96/261 (36%), Gaps = 26/261 (9%)

Query: 148 HPSGDQPAA-----------IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
            PS D P A           +AQ+ + +    +  L +      + F  A + E      
Sbjct: 9   EPSSDTPLAGLAKIALGDAVVAQVTEAL---GRRHLDIVAPAPARPFVAAALAERTH--L 63

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++      A  L +E +      AV  F S+ +    E   P  DT   +     E + 
Sbjct: 64  LLVTATGREADDLTAELQEMIGD-AVAQFPSW-ETLPHERLSPSADTVGRRV----EVLR 117

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           R+     RS       +VV++V  +    +        V L++G   +   L+  LV+  
Sbjct: 118 RLARPDDRS-YGAPLQVVVTTVRSLVQPMAPGLGEIEPVTLRVGVEHDFDGLIQRLVEMA 176

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV-- 374
           Y R D+   RG F V G  +++F S   D   RV  +G+++ E+  F     + +  +  
Sbjct: 177 YTRVDMVGKRGEFAVRGGILDLF-SPTADHPVRVEFWGDEVTELRAFSVADQRSLAELDI 235

Query: 375 ETIKIYANSHYVTPRPTLNTA 395
           + +        +      + A
Sbjct: 236 DAVIAPPCRELLLTEDVRDRA 256



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 66/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + ++ PP E     T V     + V   I    
Sbjct: 803 VLTMSATPIPRTLEMSMAGIREM----STILTPPEERHPILTYVGAYADKQVAAAIRREL 858

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +   + + E     R +  H ++        ++      +DVLV
Sbjct: 859 LRDGQVFYVHNRVSSIDKAAQRIRELVPEARVVVAHGQMNEDTLERTVQGFWERDYDVLV 918

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +     K  
Sbjct: 919 CTTIIETGLDISNANTLIVERADSLGLSQ----LHQLRGRVGRSRERGYAYFLYPPEKP- 973

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N    
Sbjct: 974 ---LTETAYDRLATISQNSDLG 992



 Score = 38.9 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 62/155 (40%), Gaps = 15/155 (9%)

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           +        V+S      E       +   +I   G     + +R+A   V+D       
Sbjct: 651 FTETHDQLTVISEVKADME---KAVPMDRVVIGDVGYGKTEIAVRAAFKAVQD------- 700

Query: 578 AAQQGLRILL--TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              + + +L+  T+L ++  +  TE +    ++VR +       E  EI+  +  G+ DV
Sbjct: 701 --GKQVAVLVPTTLLAQQHLQTFTERMAAFPVKVRGLSRFTDAGESKEIVAGMADGEIDV 758

Query: 636 LVGIN-LLREGLDIPECGLVAILDADKEGFLRSKT 669
           +VG + LL+  +   + GLV + +  + G    + 
Sbjct: 759 VVGTHRLLQTAVRWKDLGLVIVDEEQRFGVEHKEH 793


>gi|283784907|ref|YP_003364772.1| transcription-repair coupling factor [Citrobacter rodentium ICC168]
 gi|282948361|emb|CBG87947.1| transcription-repair coupling factor [Citrobacter rodentium ICC168]
          Length = 1148

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 120/307 (39%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E + F   + +   
Sbjct: 12  KAGDQRLLGELTGAACATLVAEIAERHVGPVVLIAPDMQNALRLHDEIRQFT--DQMVMN 69

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
           ++ ++    +++ P  +    + S++ +     R             ++V   + +  + 
Sbjct: 70  LADWETLPYDSFSPHQEIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G S+ +  L S L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSYLHGHALVMKKGQSLSRDALRSQLDGAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
             +R+  F ++I+ +  F   T + +  V  I +     +    PT  TA++  + + + 
Sbjct: 178 QPYRLDFFDDEIDSLRLFDADTQRTLEEVAEINLLPAHEF----PTDKTAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP   LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLSPLFSYF 276

Query: 466 PEDSLLF 472
           P ++L+ 
Sbjct: 277 PANTLVV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 69/180 (38%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDNLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++  + L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAVDRLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|315296619|gb|EFU55914.1| transcription-repair coupling factor [Escherichia coli MS 16-3]
          Length = 1164

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTIQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|300716251|ref|YP_003741054.1| transcription-repair-coupling factor [Erwinia billingiae Eb661]
 gi|299062087|emb|CAX59203.1| Transcription-repair-coupling factor [Erwinia billingiae Eb661]
          Length = 1147

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 122/310 (39%), Gaps = 38/310 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + + ++ QL  G +TG+      A++IE    P +++AP+   A +LY E K  F    V
Sbjct: 11  VKAGDQRQL--GQLTGAACAVECAEIIERHPGPVMLIAPDMQNALRLYDEIKQ-FTDEPV 67

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                + +    +++ P  D    + S++ +     R             +++   + + 
Sbjct: 68  MSLADW-ETLPFDSFSPHQDIISSRLSTLYQLPMMER-----------GVLILPVNTLLQ 115

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +          + +K G  + +  L S L +  Y+  D  +  G +   G  ++++P  
Sbjct: 116 RVCPHSFLHGHALVMKKGQRLSRDTLRSQLEQAGYRHVDQVMEHGEYATRGALLDLYPM- 174

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
             D  +R+  F ++I+ +  F   + + +  V  + +     +    PT   A++  + +
Sbjct: 175 GSDQPYRIDFFDDEIDSLRLFDVDSQRTLEEVPAVNLLPAHEF----PTDKAAIELFRTQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E++ + Q+++              IE +          +P P LF
Sbjct: 231 WREHFEVRR------ESEHIYQQVSK-------GTLPTGIEYWQPLF----FDQPLPALF 273

Query: 463 EYIPEDSLLF 472
            Y+PE++LL 
Sbjct: 274 SYLPENTLLV 283



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 64/178 (35%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREFDDLV--VREAILREVLR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E     L E     R    H +++  E   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKAANRLSELVPEARVAIGHGQMRERELERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLMTPHPKAM 922


>gi|295136419|ref|YP_003587095.1| transcription-repair coupling factor [Zunongwangia profunda SM-A87]
 gi|294984434|gb|ADF54899.1| transcription-repair coupling factor [Zunongwangia profunda SM-A87]
          Length = 1126

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 98/250 (39%), Gaps = 14/250 (5%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +   +           L G+ GS  +F +A   +  +RP +++  +K  AA   ++
Sbjct: 15  QQQELRDAIAVSEKNTDKIHLKGLIGSSLSFVVANAFKEAKRPFLLILNDKEEAAYHLND 74

Query: 213 FKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
            +     + V ++  SY   YQ           IE+  + N  +     +   S  ++  
Sbjct: 75  LEQLIGEDNVLFYPGSYRRPYQ-----------IEETDNANVLLRAEVLNRINS-RKKPA 122

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            IV    +    + + +   +  +++K+ D +    +   L + ++KR D     G F V
Sbjct: 123 VIVTYPDALFEKVVTRKELDRSTLKIKVNDELSIDFVNEVLFEYKFKRVDFVTEPGEFSV 182

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I++F S   D  +R+  FG++++ I  F   T      V  I I  N         
Sbjct: 183 RGGIIDVF-SFSNDEPYRIEFFGDEVDSIRSFDVETQLSTDKVNKISIMPNVENKHLDEV 241

Query: 392 LNTAMKYIKE 401
             + +KYI E
Sbjct: 242 RESFLKYIAE 251



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 70/187 (37%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +   I        P+E    R   E + D +    Q+G 
Sbjct: 708 TLTLTATPIPRTLQFSLMAARDLSTITTPPPNRYPIESNVIRFSEETIRDAVLYEIQRGG 767

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   +       +    H +++  +  +++     G+FDVLV   +
Sbjct: 768 QVFFIHNRIENIKEVAGMIQRLVPDAKVGIGHGQMEGKKLEKLMLSFINGEFDVLVSTTI 827

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+     + I +A+  G     + L Q  GR  R+       +          A+
Sbjct: 828 IESGLDVTNANTIFINNANNFGL----SDLHQMRGRVGRSNKKAFCYFITPP----YSAM 879

Query: 702 DETTRRR 708
            E  R+R
Sbjct: 880 TEEARKR 886



 Score = 41.2 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A   G ++ + V T     +  +  +E L +  + V Y++      ER
Sbjct: 590 GKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHHQTFSERLKDLPVTVDYLNRFRTAKER 649

Query: 622 IEIIRDLRLGKFDVLVGI-NLLREGLDIPECGLVAILDADKEG 663
            E + DL  G+ D+++G   L+ + +   + GL+ + +  K G
Sbjct: 650 RETLADLESGRVDIIIGTHQLVNKAVKFKDLGLLIVDEEQKFG 692


>gi|295130108|ref|YP_003580771.1| transcription-repair coupling factor [Propionibacterium acnes
           SK137]
 gi|291376182|gb|ADE00037.1| transcription-repair coupling factor [Propionibacterium acnes
           SK137]
          Length = 1222

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 85/469 (18%), Positives = 154/469 (32%), Gaps = 68/469 (14%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++      A +  +  K +   +AV Y+ S+ +    E   PRTDT   +   +   
Sbjct: 84  PVLLVTSTFREAEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLR-- 140

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
               R   T         +VV+ V  +             V+L +G+  +  EL + LV 
Sbjct: 141 ----RLCGTEG---EVPQVVVAPVRSLLQPQVAGLGRVAPVRLAVGEEHDLTELATELVN 193

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R D+   RG F V G  +++FP  LE    R+  FG++IEE++ F     +     
Sbjct: 194 AAYSRVDMVERRGEFAVRGGIVDVFPPVLE-HPVRIDFFGDEIEEMTSFAVADQRSTDET 252

Query: 375 ETIKIY-ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
               I       +      + A        K  L +  +   +LE              +
Sbjct: 253 HQELICAPCRELILTDEVRSRA--------KALLTDHPELADMLER-------------I 291

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
               + + +E     L           L + +PE +++ + +  +   + + + R     
Sbjct: 292 GNGQAVEGMEALMPALVDEMEL-----LVDVLPEHAMVVLSDPEMVRSRAADLVRTSEEF 346

Query: 494 KA--------------TLAEYGFR-LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
                            LA  G+R L     +   R   W  +   ++  SAT     L 
Sbjct: 347 LGAGWAAAAGGGQAPIDLAASGYRSLAQVRSHCLERGMAWWSMSSFSLDSSAT---DVLV 403

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
                   Q + P       V +      VE    ++      G  +LL    + MA+ +
Sbjct: 404 DDDITSAPQTVNPQ-----LVAVEPWHGDVEAAVKDLTARLDDGWTVLLCAEGEGMAKRM 458

Query: 599 TEYLYERNIRVRYMHS-------EVKTLERIEIIRDLRLGKFDVLVGIN 640
           +E L E N+  R +             + R+            +LV   
Sbjct: 459 SELLGEHNVAARLVDDVDPDATEPCVQVIRLHQRHGFAAESVKLLVAST 507



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 25/205 (12%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--------RTQVEDVYDEIN 576
             + +SATP    LE     I E     T    PP E              QV      I 
Sbjct: 815  VLAMSATPIPRTLEMAVTGIREMSTIAT----PPEERHPVLTFAGPYDEGQV---VAAIR 867

Query: 577  LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
                +  ++       +  E     L E     R +  H ++   +  +I+ D    + D
Sbjct: 868  RELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQLEQIMVDFWERRAD 927

Query: 635  VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
            VLV   ++  G+DI     + I  AD  G  +    L Q  GR  R+       +     
Sbjct: 928  VLVCTTIVESGIDISTANTLLIDRADLMGLSQ----LHQLRGRVGRSRERGYAYFLYPAD 983

Query: 695  KSIQLAIDETTRRREKQLEHNKKHN 719
            K     + +T   R   +  +    
Sbjct: 984  KP----LSQTAHDRLATMAAHTDLG 1004


>gi|170768251|ref|ZP_02902704.1| transcription-repair coupling factor [Escherichia albertii TW07627]
 gi|170123017|gb|EDS91948.1| transcription-repair coupling factor [Escherichia albertii TW07627]
          Length = 1148

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 117/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L  E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLQDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDTLRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|50842025|ref|YP_055252.1| transcription-repair coupling factor [Propionibacterium acnes
           KPA171202]
 gi|50839627|gb|AAT82294.1| transcription-repair coupling factor [Propionibacterium acnes
           KPA171202]
          Length = 1222

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 85/469 (18%), Positives = 154/469 (32%), Gaps = 68/469 (14%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++      A +  +  K +   +AV Y+ S+ +    E   PRTDT   +   +   
Sbjct: 84  PVLLVTSTFREAEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLR-- 140

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
               R   T         +VV+ V  +             V+L +G+  +  EL + LV 
Sbjct: 141 ----RLCGTEG---EVPQVVVAPVRSLLQPQVAGLGRVAPVRLAVGEEHDLTELATELVN 193

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R D+   RG F V G  +++FP  LE    R+  FG++IEE++ F     +     
Sbjct: 194 AAYSRVDMVERRGEFAVRGGIVDVFPPVLE-HPVRIDFFGDEIEEMTSFAVADQRSTDET 252

Query: 375 ETIKIY-ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
               I       +      + A        K  L +  +   +LE              +
Sbjct: 253 HQELICAPCRELILTDEVRSRA--------KALLTDHPELADMLER-------------I 291

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
               + + +E     L           L + +PE +++ + +  +   + + + R     
Sbjct: 292 GNGQAVEGMEALMPALVDEMEL-----LVDVLPEHAMVVLSDPEMVRSRAADLVRTSEEF 346

Query: 494 KA--------------TLAEYGFR-LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
                            LA  G+R L     +   R   W  +   ++  SAT     L 
Sbjct: 347 LGAGWAAAAGGGQAPIDLAASGYRSLAQVRSHCLERGMAWWSMSSFSLDSSAT---DVLV 403

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
                   Q + P       V +      VE    ++      G  +LL    + MA+ +
Sbjct: 404 DDDITSAPQTVNPQ-----LVAVEPWHGDVEAAVKDLTARLDDGWTVLLCAEGEGMAKRM 458

Query: 599 TEYLYERNIRVRYMHS-------EVKTLERIEIIRDLRLGKFDVLVGIN 640
           +E L E N+  R +             + R+            +LV   
Sbjct: 459 SELLGEHNVAARLVDDVDPDATEPCVQVIRLHQRHGFAAESVKLLVAST 507



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 25/205 (12%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--------RTQVEDVYDEIN 576
             + +SATP    LE     I E     T    PP E              QV      I 
Sbjct: 815  VLAMSATPIPRTLEMAVTGIREMSTIAT----PPEERHPVLTFAGPYDEGQV---VAAIR 867

Query: 577  LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
                +  ++       +  E     L E     R +  H ++   +  +I+ D    + D
Sbjct: 868  RELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQLEQIMVDFWERRAD 927

Query: 635  VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
            VLV   ++  G+DI     + I  AD  G  +    L Q  GR  R+       +     
Sbjct: 928  VLVCTTIVESGIDISTANTLLIDRADLMGLSQ----LHQLRGRVGRSRERGYAYFLYPAD 983

Query: 695  KSIQLAIDETTRRREKQLEHNKKHN 719
            K     + +T   R   +  +    
Sbjct: 984  KP----LSQTAHDRLATMAAHTDLG 1004


>gi|21232129|ref|NP_638046.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21113878|gb|AAM41970.1| transcription-repair coupling factor [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 1155

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 100/290 (34%), Gaps = 34/290 (11%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           + +   +++A+  EA   P +V+A +   A Q+ ++        +            P  
Sbjct: 26  SPTALAWSIARAAEAHAGPVLVIARDNQSAHQIEADLHALLGDASAL----------PVV 75

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIV 295
             P  +T    + S + +I   R +A   L      +V   V   +  +  +        
Sbjct: 76  PFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTRGVVTVPVQTLLQQLAPLSYIVGGSF 135

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L +G  ++       L    Y+     +  G F V G  +++FP    D   R+ +   
Sbjct: 136 DLTVGQRLDLDAEKRCLESAGYRNVPQVMDPGDFAVRGGLLDVFPM-GADTPLRIELLDE 194

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ I  F P + + +  V+ +K+           ++   +      L+ R         
Sbjct: 195 DIDSIRAFDPESQRSLDKVDAVKMLPGREVPMDDASVERVLAC----LRERFD------- 243

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                 ++ R +   + L++  +   +E Y              TLF+Y+
Sbjct: 244 ------VDTRRSALYQDLKSGIAPSGVEYYLPMFF-----SKTATLFDYL 282



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I +   H ++   E   ++ D +  +F+VL+   ++  G+DIP   
Sbjct: 833 RMQRDLSELVPEARIGIA--HGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNAN 890

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +S+
Sbjct: 891 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVVPDRRSM 931


>gi|261867464|ref|YP_003255386.1| transcription-repair coupling factor [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412796|gb|ACX82167.1| transcription-repair coupling factor [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 1173

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/330 (16%), Positives = 118/330 (35%), Gaps = 35/330 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
              ++L  +     +  ++++        +V+  +   A +L  E K            +
Sbjct: 36  NDHKILANILPGADSLAISEIAAQFDGLTVVVTNDTRSAVRLEKELKQ----------PA 85

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGS 286
                Q   + P  +T      S ++ I   R SA   L +R   I +  V+ +   +  
Sbjct: 86  PSALSQNVTFFPDWETLPYDSFSPHQDIISARLSALFHLQQRKQGIFILPVATLMQRVCP 145

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                  ++ +  GD    + L   L K  Y+  +  +  G + V G  +++FP    + 
Sbjct: 146 PSYLQHNVLLINKGDRFVIESLRLQLEKAGYRAVEQVLEHGEYAVRGALLDLFPMGSAE- 204

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ I  F   T + ++ ++ I +     +    PT +T +++ + + +  
Sbjct: 205 PFRLDFFDDEIDSIRTFDVDTQRTLQEIDQINLLPAHEF----PTDSTGIEFFRSQFR-- 258

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             E  +  R  E         +  + +        IE +          E   TLF+Y P
Sbjct: 259 -AEFGEIRRDPE---------HIYQQVSKGTLAAGIEYWQPLFF-----EQMATLFDYFP 303

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
            ++L    E +    Q    Y     R  +
Sbjct: 304 ANTLFITAEQNQ--AQGERFYTDAQQRFES 331



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +D+   + I     +G
Sbjct: 778 ILTLTATPIPRTLNMAMNGIRDLSIIST-PPARRLTIKTFVRQTDDLVIREAILREILRG 836

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R    H +++  E   ++ D    +++VLV   
Sbjct: 837 GQVYYLHNDVASIENTAEKLTALVPEARVTVGHGQMRERELERVMSDFYHQRYNVLVCST 896

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +  
Sbjct: 897 IIETGIDVPTANTIIIERADNFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKLMTK 951



 Score = 37.8 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 4/146 (2%)

Query: 81  QSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITF 140
                 +    +  SE       +A  ++      LL         + +S     ++   
Sbjct: 560 VGGSDETAPLHKLGSEAWGKARSKAAEKIRDVAAELLDVYAQREAQKGFSFQYDREEFQQ 619

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPA 196
           F     +  + DQ  AI  ++  +   +   +L+ G  G GKT      A +     +  
Sbjct: 620 FTATFPFEETHDQLMAINAVISDMTQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQV 679

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAV 222
            V+ P  +LA Q +  FK+ F +  V
Sbjct: 680 AVLVPTTLLAQQHFDNFKDRFANLPV 705


>gi|171058689|ref|YP_001791038.1| transcription-repair coupling factor [Leptothrix cholodnii SP-6]
 gi|170776134|gb|ACB34273.1| transcription-repair coupling factor [Leptothrix cholodnii SP-6]
          Length = 1155

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 80/460 (17%), Positives = 155/460 (33%), Gaps = 70/460 (15%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA--MQRPAI-VMAPNKILAAQLYSEFKNF 216
           LL  I   ++   +    GS     +A+  +A    R  + V+      A +L  E   F
Sbjct: 2   LLPNIAPGKRF-AVSRPIGSADALLLARFAQARVASRQLLAVIVAEPADAQRLPDELAFF 60

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI----NEQIDRMRHSATRSLLERNDC 272
            P   V  F  + +    +++ P  D   E+ +++    + ++D +   AT +L      
Sbjct: 61  APELRVAVFPDW-ETLPYDSFSPHQDLISERLATLWRVRSGEVDVVLLPATTALT----- 114

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
                      +      +      K    ++   L + L    Y+     +  G + V 
Sbjct: 115 ----------RLAPPSFLAGYTFHFKQKQKLDDAALKAQLTLAGYQHVSQVVSPGEYAVR 164

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  I++FP     V +RV +F N+++ I  F P + + +  V  +++     +       
Sbjct: 165 GSLIDLFPM-GSLVPYRVDLFDNEVDSIRVFNPDSQRSLYPVPEVRLLPGREFPMD-DAG 222

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
             A          R    EK        R+        + + +  +   IE Y       
Sbjct: 223 RQAF---------RARWREKMDGDPSKARI-------YKDMASGIATAGIEYYLPLFF-- 264

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC-MDNR 511
              E P T F+Y+ + + L +   H  + +    + G+   +     +    P    ++ 
Sbjct: 265 ---EQPATFFDYLGDAAALVL---HGEVDEALARFWGETRERHKFLRHDPERPVLPPEDI 318

Query: 512 PLRFEEWNCLRPTTIVVSA---TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
            LR EE+         +S     P  W              RP  L D  V IR     +
Sbjct: 319 YLRQEEFFARCNQHAQLSIRGNDPVEW-------------ARP--LPDLSV-IRGGTDPL 362

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           + +  ++     Q  R+L+   +    E L E L +  + 
Sbjct: 363 QRLEQQLEKIRSQKNRLLIVAESAGRRESLLELLRDHRLE 402



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 70/182 (38%), Gaps = 15/182 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R+       + + +    ++
Sbjct: 752 VLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRNETG--GTIREAVMRELKR 809

Query: 582 GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E+    L E L E  I V   H ++   E   ++RD    + +VL+
Sbjct: 810 GGQVYFLHNEVDTIENRRQKLEEMLPEARIAVA--HGQMPERELERVMRDFVAQRHNVLL 867

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +          T+ +
Sbjct: 868 CSTIIETGIDVPSANTIVISRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVPDTEGL 923

Query: 698 QL 699
             
Sbjct: 924 TK 925


>gi|314969382|gb|EFT13480.1| transcription-repair coupling factor [Propionibacterium acnes
           HL037PA1]
          Length = 1208

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 85/469 (18%), Positives = 154/469 (32%), Gaps = 68/469 (14%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++      A +  +  K +   +AV Y+ S+ +    E   PRTDT   +   +   
Sbjct: 70  PVLLVTSTFREAEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLR-- 126

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
               R   T         +VV+ V  +             V+L +G+  +  EL + LV 
Sbjct: 127 ----RLCGTEG---EVPQVVVAPVRSLLQPQVAGLGRVAPVRLAVGEEHDLTELATELVN 179

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R D+   RG F V G  +++FP  LE    R+  FG++IEE++ F     +     
Sbjct: 180 AAYSRVDMVERRGEFAVRGGIVDVFPPVLE-HPVRIDFFGDEIEEMTSFAVADQRSTDET 238

Query: 375 ETIKIY-ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
               I       +      + A        K  L +  +   +LE              +
Sbjct: 239 HQELICAPCRELILTDEVRSRA--------KALLTDHPELADMLER-------------I 277

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
               + + +E     L           L + +PE +++ + +  +   + + + R     
Sbjct: 278 GNGQAVEGMEALMPALVDEMEL-----LVDVLPEHAMVVLSDPEMVRSRAADLVRTSEEF 332

Query: 494 KA--------------TLAEYGFR-LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
                            LA  G+R L     +   R   W  +   ++  SAT     L 
Sbjct: 333 LGAGWAAAAGGGQAPIDLAASGYRSLAQVRSHCLERGMAWWSMSSFSLDSSAT---DVLV 389

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
                   Q + P       V +      VE    ++      G  +LL    + MA+ +
Sbjct: 390 DDDITSAPQTVNPQ-----LVAVEPWHGDVEAAVKDLTARLDDGWTVLLCAEGEGMAKRM 444

Query: 599 TEYLYERNIRVRYMHS-------EVKTLERIEIIRDLRLGKFDVLVGIN 640
           +E L E N+  R +             + R+            +LV   
Sbjct: 445 SELLGEHNVAARLVDDVDPDATEPCVQVIRLHQRHGFAAESVKLLVAST 493



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 25/205 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--------RTQVEDVYDEIN 576
            + +SATP    LE     I E     T    PP E              QV      I 
Sbjct: 801 VLAMSATPIPRTLEMAVTGIREMSTIAT----PPEERHPVLTFAGPYDEGQV---VAAIR 853

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
               +  ++       +  E     L E     R +  H ++   +  +I+ D    + D
Sbjct: 854 RELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQLEQIMVDFWERRAD 913

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV   ++  G+DI     + I  AD  G  +    L Q  GR  R+       +     
Sbjct: 914 VLVCTTIVESGIDISTANTLLIDRADLMGLSQ----LHQLRGRVGRSRERGYAYFLYPAD 969

Query: 695 KSIQLAIDETTRRREKQLEHNKKHN 719
           K     + +T   R   +  +    
Sbjct: 970 KP----LSQTAHDRLATMAAHTDLG 990


>gi|313832012|gb|EFS69726.1| transcription-repair coupling factor [Propionibacterium acnes
           HL007PA1]
          Length = 1208

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 85/469 (18%), Positives = 154/469 (32%), Gaps = 68/469 (14%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++      A +  +  K +   +AV Y+ S+ +    E   PRTDT   +   +   
Sbjct: 70  PVLLVTSTFREAEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLR-- 126

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
               R   T         +VV+ V  +             V+L +G+  +  EL + LV 
Sbjct: 127 ----RLCGTEG---EVPQVVVAPVRSLLQPQVAGLGRVAPVRLAVGEEHDLTELATELVN 179

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R D+   RG F V G  +++FP  LE    R+  FG++IEE++ F     +     
Sbjct: 180 AAYSRVDMVERRGEFAVRGGIVDVFPPVLE-HPVRIDFFGDEIEEMTSFAVADQRSTDET 238

Query: 375 ETIKIY-ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
               I       +      + A        K  L +  +   +LE              +
Sbjct: 239 HQELICAPCRELILTDEVRSRA--------KALLTDHPELADMLER-------------I 277

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
               + + +E     L           L + +PE +++ + +  +   + + + R     
Sbjct: 278 GNGQAVEGMEALMPALVDEMEL-----LVDVLPEHAMVVLSDPEMVRSRAADLVRTSEEF 332

Query: 494 KA--------------TLAEYGFR-LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
                            LA  G+R L     +   R   W  +   ++  SAT     L 
Sbjct: 333 LGAGWAAAAGGGQAPIDLAASGYRSLAQVRSHCLERGMAWWSMSSFSLDSSAT---DVLV 389

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
                   Q + P       V +      VE    ++      G  +LL    + MA+ +
Sbjct: 390 DDDITSAPQTVNPQ-----LVAVEPWHGDVEAAVKDLTARLDDGWTVLLCAEGEGMAKRM 444

Query: 599 TEYLYERNIRVRYMHS-------EVKTLERIEIIRDLRLGKFDVLVGIN 640
           +E L E N+  R +             + R+            +LV   
Sbjct: 445 SELLGEHNVAARLVDDVDPDATEPCVQVIRLHQRHGFAAESVKLLVAST 493



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 27/206 (13%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA---------RTQVEDVYDEI 575
            + +SATP    LE          IR    +  P E R +           QV      I
Sbjct: 801 VLAMSATPIPRTLEMAVTG-----IREMSTIATPPEERHSVLTFAGPYDEGQV---VAAI 852

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKF 633
                +  ++       +  E     L E     R +  H ++   +  +I+ D    + 
Sbjct: 853 RRELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQLEQIMVDFWERRA 912

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           DVLV   ++  G+DI     + I  AD  G  +    L Q  GR  R+       +    
Sbjct: 913 DVLVCTTIVESGIDISTANTLLIDRADLMGLSQ----LHQLRGRVGRSRERGYAYFLYPA 968

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHN 719
            K     + +T   R   +  +    
Sbjct: 969 DKP----LSQTAHDRLATMAAHTDLG 990


>gi|261400667|ref|ZP_05986792.1| transcription-repair coupling factor [Neisseria lactamica ATCC
           23970]
 gi|269209577|gb|EEZ76032.1| transcription-repair coupling factor [Neisseria lactamica ATCC
           23970]
          Length = 1164

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 146/422 (34%), Gaps = 61/422 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L S
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLTGRTFWLKTGQTLDIGRLKS 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFVDESHVTIPQISGMYRG 489
           + +        +E Y              TLF+YI ED+  + +D+ H      +  +  
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFVSLDDVHA----EANRFWS 292

Query: 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
           D   +  +A+     P               L P  + +SA   +  L+    ++ +   
Sbjct: 293 DVKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSG 338

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +   L D  V       Q ++    + +       RILL   +    E +  +L +  ++
Sbjct: 339 KEHTLPDLAV-----NRQSDEPLQALKDFQTAFEGRILLCAESLGRRETMLGFLQQNGLK 393

Query: 609 VR 610
            +
Sbjct: 394 AK 395



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 19/188 (10%)

Query: 525 TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
            + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 767 ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 823

Query: 581 QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 824 RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 881

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA--DTIT 694
           +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +         + IT
Sbjct: 882 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPEYIT 937

Query: 695 KSIQLAID 702
           K  +  +D
Sbjct: 938 KDAEKRLD 945


>gi|222100017|ref|YP_002534585.1| Transcription-repair coupling factor [Thermotoga neapolitana DSM
           4359]
 gi|221572407|gb|ACM23219.1| Transcription-repair coupling factor [Thermotoga neapolitana DSM
           4359]
          Length = 895

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 97/498 (19%), Positives = 180/498 (36%), Gaps = 82/498 (16%)

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIV 295
           + P  D    ++  ++ ++ + R      LL+  +  +V+++  +   I S ES  +  +
Sbjct: 20  FYPSRDNLPLEDVPLSPEVKKKRMEILWRLLKGENLKIVTTLKALTEKIFSPESLKERTI 79

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFG 354
           +++   S          V+  Y+R     + G F + G  ++IF P +  D   R+ +FG
Sbjct: 80  EVRRSASFYLS--PERFVEMGYERTFTVQMPGEFSIRGGILDIFSPGY--DFPVRIELFG 135

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR----------------PTLNTAMKY 398
             +E+I  F   T +  + V+ + I                              T  + 
Sbjct: 136 EVVEDIRFFDVSTQRSFQKVDEVYILPFLDEYGDSSLLDFVKDVRFTCENLEKALTEYRK 195

Query: 399 IKEELKMRLIE----LEKEGRLLEAQRLEQRITY----------------DLEMLETTGS 438
           I++ELK  L E       EG L    +  ++ +                 D++ +E    
Sbjct: 196 IRKELKDLLKEKYDLFFDEGVLERVLKNVEKTSAGATVSSGIEERSLPLVDIDEIEEGEL 255

Query: 439 CQSIENYSRYLTGR-----NPGEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGD 490
               E+      G        GE      +Y+    ED++L+V      I ++       
Sbjct: 256 VVHKEHGIAIFEGMIRLKSVLGER-----DYLKLKYEDAVLYV--PVEKIDRVHRYIGDP 308

Query: 491 FHRKATLAEYG---FRLPSCMDNRPLRFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIV 545
              K      G     L    ++   R  E   L      V  T  PG  ELE+      
Sbjct: 309 SQVKLDRLNRGRWKRTLKKVREDIEKRVRELVELYLKREEVRGTLLPGDPELEEKFAETF 368

Query: 546 EQIIRP--TGLVDPPVEIRSARTQVEDVYD------EINLAAQQGLRILL---------- 587
             I  P     ++  +   S+   ++ +        +  +A +   R ++          
Sbjct: 369 PYIETPDQQKCIEEVLTDLSSEKPMDRLLCGDAGVGKTEVALRAAFRAVVSGKQVAVLVP 428

Query: 588 -TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREG 645
            TVL ++  E+  E L    +RV  + S     ER EI+  L+ G+ DV++G + LL E 
Sbjct: 429 TTVLARQHYENFKERLEPFGVRVELLDSSRTLRERKEILEGLKKGEIDVVIGTHALLNER 488

Query: 646 LDIPECGLVAILDADKEG 663
           ++  + GLV I +  K G
Sbjct: 489 VEFSDLGLVIIDEEQKFG 506



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 13/181 (7%)

Query: 516 EEWNCLR--PTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E++  +R     + +SATP    L     G+    +I        PV +  A    E V 
Sbjct: 511 EKFKKMRLSVNVLSLSATPIPRTLHMALSGMKDLSVINAPPPGRKPVHVYIAEYNEELVK 570

Query: 573 DEINLAAQQGLRILLT----VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             +     +G +++           + E+L     E  I +   H ++      +++ + 
Sbjct: 571 GAVVREVNRGGQVIYVHNRVEELPEVLENLKRMFPELRIAMA--HGKMSRRVMEKVVHEF 628

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G  DVL+   ++  G+DIP    + + DA + G  +    L Q  GR  R+       
Sbjct: 629 YSGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYGLAQ----LYQLRGRVGRSDRRAFAY 684

Query: 689 Y 689
           +
Sbjct: 685 F 685


>gi|313772670|gb|EFS38636.1| transcription-repair coupling factor [Propionibacterium acnes
           HL074PA1]
 gi|313810893|gb|EFS48607.1| transcription-repair coupling factor [Propionibacterium acnes
           HL083PA1]
 gi|313834448|gb|EFS72162.1| transcription-repair coupling factor [Propionibacterium acnes
           HL056PA1]
 gi|314974450|gb|EFT18545.1| transcription-repair coupling factor [Propionibacterium acnes
           HL053PA1]
 gi|314977360|gb|EFT21455.1| transcription-repair coupling factor [Propionibacterium acnes
           HL045PA1]
 gi|314985541|gb|EFT29633.1| transcription-repair coupling factor [Propionibacterium acnes
           HL005PA1]
 gi|315097614|gb|EFT69590.1| transcription-repair coupling factor [Propionibacterium acnes
           HL038PA1]
 gi|327331627|gb|EGE73366.1| transcription-repair coupling factor [Propionibacterium acnes
           HL096PA2]
 gi|327446976|gb|EGE93630.1| transcription-repair coupling factor [Propionibacterium acnes
           HL043PA1]
 gi|327449987|gb|EGE96641.1| transcription-repair coupling factor [Propionibacterium acnes
           HL043PA2]
 gi|328761618|gb|EGF75134.1| transcription-repair coupling factor [Propionibacterium acnes
           HL099PA1]
          Length = 1208

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 85/469 (18%), Positives = 154/469 (32%), Gaps = 68/469 (14%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++      A +  +  K +   +AV Y+ S+ +    E   PRTDT   +   +   
Sbjct: 70  PVLLVTSTFREAEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLR-- 126

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
               R   T         +VV+ V  +             V+L +G+  +  EL + LV 
Sbjct: 127 ----RLCGTEG---EVPQVVVAPVRSLLQPQVAGLGRVAPVRLAVGEEHDLTELATELVN 179

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R D+   RG F V G  +++FP  LE    R+  FG++IEE++ F     +     
Sbjct: 180 AAYSRVDMVERRGEFAVRGGIVDVFPPVLE-HPVRIDFFGDEIEEMTSFAVADQRSTDET 238

Query: 375 ETIKIY-ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
               I       +      + A        K  L +  +   +LE              +
Sbjct: 239 HQELICAPCRELILTDEVRSRA--------KALLTDHPELADMLER-------------I 277

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
               + + +E     L           L + +PE +++ + +  +   + + + R     
Sbjct: 278 GNGQAVEGMEALMPALVDEMEL-----LVDVLPEHAMVVLSDPEMVRSRAADLVRTSEEF 332

Query: 494 KA--------------TLAEYGFR-LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
                            LA  G+R L     +   R   W  +   ++  SAT     L 
Sbjct: 333 LGAGWAAAAGGGQAPIDLAASGYRSLAQVRSHCLERGMAWWSMSSFSLDSSAT---DVLV 389

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
                   Q + P       V +      VE    ++      G  +LL    + MA+ +
Sbjct: 390 DDDITSAPQTVNPQ-----LVAVEPWHGDVEAAVKDLTARLDDGWTVLLCAEGEGMAKRM 444

Query: 599 TEYLYERNIRVRYMHS-------EVKTLERIEIIRDLRLGKFDVLVGIN 640
           +E L E N+  R +             + R+            +LV   
Sbjct: 445 SELLGEHNVAARLVDDVDPDATEPCVQVIRLHQRHGFAAESVKLLVAST 493



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 25/205 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--------RTQVEDVYDEIN 576
            + +SATP    LE     I E     T    PP E              QV      I 
Sbjct: 801 VLAMSATPIPRTLEMAVTGIREMSTIAT----PPEERHPVLTFAGPYDEGQV---VAAIR 853

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
               +  ++       +  E     L E     R +  H ++   +  +I+ D    + D
Sbjct: 854 RELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQLEQIMVDFWERRAD 913

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV   ++  G+DI     + I  AD  G  +    L Q  GR  R+       +     
Sbjct: 914 VLVCTTIVESGIDISTANTLLIDRADLMGLSQ----LHQLRGRVGRSRERGYAYFLYPAD 969

Query: 695 KSIQLAIDETTRRREKQLEHNKKHN 719
           K     + +T   R   +  +    
Sbjct: 970 KP----LSQTAHDRLATMAAHTDLG 990


>gi|188575614|ref|YP_001912543.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188520066|gb|ACD58011.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 1154

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 105/292 (35%), Gaps = 34/292 (11%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           + +   +++A+  EA   P +V+A +   A Q+ ++       ++            P  
Sbjct: 26  SPTALAWSIARAAEAHAGPLLVIARDNQSAHQIEADLHALLGEHSAL----------PVV 75

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIV 295
             P  +T    + S + +I   R +A   L   +  +V+  V   +  +  +        
Sbjct: 76  PFPDWETLPYDQFSPHPEIISQRLAALHRLPGLSKGVVIVPVQTLLQQLAPLSYIVGGSF 135

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L +G  ++       L    Y+     +  G F V G  +++FP    D   RV +   
Sbjct: 136 DLIVGQRLDLGAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPM-GADTPLRVELLDE 194

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ I  F P + + +  VE +K+           ++   +      L+ R         
Sbjct: 195 DIDSIRVFDPESQRSLDKVEAVKMLPGREVPMDDASVERVLAC----LRERFD------- 243

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                 ++ R +   + L++  +   IE Y      +       TLF+Y+ +
Sbjct: 244 ------VDTRRSALYQDLKSGLAPSGIEYYLPMFFAKT-----ATLFDYLDK 284



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I +   H ++   E   ++ D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRDLSELVPEARIGIA--HGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +++
Sbjct: 890 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVVPDRRAM 930


>gi|120437484|ref|YP_863170.1| transcription-repair coupling factor [Gramella forsetii KT0803]
 gi|117579634|emb|CAL68103.1| transcription-repair coupling factor [Gramella forsetii KT0803]
          Length = 1125

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 95/248 (38%), Gaps = 14/248 (5%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +   +      +    L G+ GS  +F +A   +    P +++  +K  AA   ++
Sbjct: 15  QQQELRNAIASFEKNQSNIHLKGLVGSALSFVVADAFKESDHPFLLIFNDKEEAAYYLND 74

Query: 213 FKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
            +       V ++  SY   YQ           IE+  + N  +     +   S  ++  
Sbjct: 75  LEQLVGEKNVLFYPGSYRRPYQ-----------IEETDNANVLLRAEVLNRINS-RKKPA 122

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            IV    +    + + +   +  +++ +GD +    +   L + Q+KR D     G F V
Sbjct: 123 LIVTYPDALFEKVVTRKELDKSTLKIAVGDELSIDFVNEVLFEYQFKRVDFVTEPGEFSV 182

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I++F S   D  +R+  FG++I+ I  F   T       + I +  N         
Sbjct: 183 RGGIIDVF-SFSHDEPYRIEFFGDEIDSIRTFDVETQLSTDKKKKISVMPNVENKHLDEV 241

Query: 392 LNTAMKYI 399
             + +KYI
Sbjct: 242 RESFLKYI 249



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 72/187 (38%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +   I        P+E    R   E + D ++   Q+G 
Sbjct: 708 TLTLTATPIPRTLQFSLMAARDLSTITTPPPNRYPIESHVIRFSEETIRDAVSYEIQRGG 767

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   +       +    H +++  +  +++     G+FDVLV   +
Sbjct: 768 QVFFIHNRVENIKEVAGMIQRLVPDAKIGVGHGQMEGKKLEKLMLSFINGEFDVLVSTTI 827

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+ E   + I +A+  G     + L Q  GR  R+       +          A+
Sbjct: 828 VESGLDVSEANTIFINNANNFGL----SDLHQMRGRVGRSNKKAFCYFITPP----YSAM 879

Query: 702 DETTRRR 708
            E  R+R
Sbjct: 880 TEDARKR 886



 Score = 40.8 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 64/172 (37%), Gaps = 13/172 (7%)

Query: 495 ATLAEYGFRL-PSCMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
               E GF+  P       L     +      +   +A     E E+    +V   +   
Sbjct: 531 KRRLEKGFKFDPDSYLQHELEASFMYEDTPDQSSSTAAVKADMENERPMDRLVCGDV--- 587

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           G     + IR+A   V++      L       IL     +   E L ++     +R+ Y+
Sbjct: 588 GFGKTEIAIRAAFKAVDNNKQVAILVPTT---ILAFQHHRTFTERLKDF----PVRIDYL 640

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGI-NLLREGLDIPECGLVAILDADKEG 663
           +      ER E + DL  GK D+++G   L+ + +   + GL+ + +  K G
Sbjct: 641 NRFRTAKERKETLADLEAGKVDIIIGTHQLVSKAVKFKDLGLLVVDEEQKFG 692


>gi|315187200|gb|EFU20957.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
           6578]
          Length = 1127

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 91/521 (17%), Positives = 169/521 (32%), Gaps = 86/521 (16%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           A  +LL   +  E    + GV G   +F +A++   + RP  V+ P +  A       + 
Sbjct: 18  AWKELLSRYNRGEVPIGVRGVQGGFSSFFLARL-SGLGRPLCVVFPTEKEAEDAVESLRA 76

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
                    F  +      E        +              R      LL     +V 
Sbjct: 77  LGVEAGC--FPEWGITLYGEGLAEHAPVFGR------------RAEVLARLLAGELEVVC 122

Query: 276 SSVSC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +S+   ++ +   + + + ++ L+ G  V+   L   LV+  Y R     +RG   V G+
Sbjct: 123 TSLRAFLWRLPPADRFRERLLVLRKGQQVDPAALAGRLVEMGYFRVPRVSLRGECAVRGE 182

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            +++F +  E+ A+R+ +  + IE I  F P + + ++  + I +     Y+     L+ 
Sbjct: 183 VVDVF-APGEEGAFRLVVDFDRIEHIRLFDPSSQRTLKEKDLIVVPPLREYLWDEEGLSR 241

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
               ++E LK R   L+ +G + E              L   G  Q  E Y         
Sbjct: 242 ----VREALKARAPRLDVDGLVGE--------------LAVRGRMQGEELYWPLAY---- 279

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
            E P +L EY+P  + L +      +      YR +         +   +P+  D   L 
Sbjct: 280 -ESPSSLLEYVP-GTPLLLLMGKERLLHADEAYRTELSTVHGRVRHLRPVPTPED-VLLP 336

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           F      R    +        E E        +  R                 V  + +E
Sbjct: 337 FSHLETRRDRIEIF-----LLEEEDSMVHFSCEGPRV------------FFGNVNFLKEE 379

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++     G R+ +   ++   E L   L E                             D
Sbjct: 380 LSRLLSLGYRVYVLTDSEPQRERLAFLLREFP---------------------------D 412

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           V V +  L  G  +PE       + +  G  R   + ++ +
Sbjct: 413 VKVELTTLSTGFVLPEAKRAVFHENEIFGRRRRTPASVKRV 453



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 75/205 (36%), Gaps = 25/205 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L       + +I   + L  PP E R   T +     E +   I    
Sbjct: 738 CLTLTATPIPRTLHMS----LLKIRDISLLETPPRERRPIETHILEFSEEVIARAIRREV 793

Query: 580 QQGLRILLTVLTKRMAEDL--TEYLYER---NIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++G ++          E L   +   ER    + V   H ++ + +  EI+     G F 
Sbjct: 794 ERGGQVFYL---HNRVETLPQVKTFIERLVPEVMVEVAHGKMSSHQLEEIMHRFIHGGFH 850

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV   ++  G++IP    + I  AD  G  +    L Q  GR  R+  +          
Sbjct: 851 VLVSTTIIENGINIPNANTIIIDRADMYGIAQ----LYQLRGRVGRSDRTAYAYLFYP-- 904

Query: 695 KSIQLAIDETTRRREKQLEHNKKHN 719
              Q  I E   +R + +  + +  
Sbjct: 905 --AQREISELAAKRLQVIADHTELG 927


>gi|313765341|gb|EFS36705.1| transcription-repair coupling factor [Propionibacterium acnes
           HL013PA1]
 gi|313806696|gb|EFS45203.1| transcription-repair coupling factor [Propionibacterium acnes
           HL087PA2]
 gi|313814596|gb|EFS52310.1| transcription-repair coupling factor [Propionibacterium acnes
           HL025PA1]
 gi|313815252|gb|EFS52966.1| transcription-repair coupling factor [Propionibacterium acnes
           HL059PA1]
 gi|313817239|gb|EFS54953.1| transcription-repair coupling factor [Propionibacterium acnes
           HL046PA2]
 gi|313821699|gb|EFS59413.1| transcription-repair coupling factor [Propionibacterium acnes
           HL036PA1]
 gi|313824410|gb|EFS62124.1| transcription-repair coupling factor [Propionibacterium acnes
           HL036PA2]
 gi|313826767|gb|EFS64481.1| transcription-repair coupling factor [Propionibacterium acnes
           HL063PA1]
 gi|313828557|gb|EFS66271.1| transcription-repair coupling factor [Propionibacterium acnes
           HL063PA2]
 gi|314916016|gb|EFS79847.1| transcription-repair coupling factor [Propionibacterium acnes
           HL005PA4]
 gi|314916921|gb|EFS80752.1| transcription-repair coupling factor [Propionibacterium acnes
           HL050PA1]
 gi|314921562|gb|EFS85393.1| transcription-repair coupling factor [Propionibacterium acnes
           HL050PA3]
 gi|314931114|gb|EFS94945.1| transcription-repair coupling factor [Propionibacterium acnes
           HL067PA1]
 gi|314954829|gb|EFS99235.1| transcription-repair coupling factor [Propionibacterium acnes
           HL027PA1]
 gi|314958995|gb|EFT03097.1| transcription-repair coupling factor [Propionibacterium acnes
           HL002PA1]
 gi|314961290|gb|EFT05391.1| transcription-repair coupling factor [Propionibacterium acnes
           HL002PA2]
 gi|314980484|gb|EFT24578.1| transcription-repair coupling factor [Propionibacterium acnes
           HL072PA2]
 gi|315086378|gb|EFT58354.1| transcription-repair coupling factor [Propionibacterium acnes
           HL002PA3]
 gi|315087626|gb|EFT59602.1| transcription-repair coupling factor [Propionibacterium acnes
           HL072PA1]
 gi|315099738|gb|EFT71714.1| transcription-repair coupling factor [Propionibacterium acnes
           HL059PA2]
 gi|315101957|gb|EFT73933.1| transcription-repair coupling factor [Propionibacterium acnes
           HL046PA1]
 gi|315106536|gb|EFT78512.1| transcription-repair coupling factor [Propionibacterium acnes
           HL030PA1]
 gi|315110324|gb|EFT82300.1| transcription-repair coupling factor [Propionibacterium acnes
           HL030PA2]
 gi|327333610|gb|EGE75330.1| transcription-repair coupling factor [Propionibacterium acnes
           HL096PA3]
 gi|327445362|gb|EGE92016.1| transcription-repair coupling factor [Propionibacterium acnes
           HL013PA2]
 gi|327454831|gb|EGF01486.1| transcription-repair coupling factor [Propionibacterium acnes
           HL087PA3]
 gi|327455689|gb|EGF02344.1| transcription-repair coupling factor [Propionibacterium acnes
           HL083PA2]
 gi|328755887|gb|EGF69503.1| transcription-repair coupling factor [Propionibacterium acnes
           HL087PA1]
 gi|328756670|gb|EGF70286.1| transcription-repair coupling factor [Propionibacterium acnes
           HL025PA2]
          Length = 1208

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 85/469 (18%), Positives = 154/469 (32%), Gaps = 68/469 (14%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++      A +  +  K +   +AV Y+ S+ +    E   PRTDT   +   +   
Sbjct: 70  PVLLVTSTFREAEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLR-- 126

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
               R   T         +VV+ V  +             V+L +G+  +  EL + LV 
Sbjct: 127 ----RLCGTEG---EVPQVVVAPVRSLLQPQVAGLGRVAPVRLAVGEEHDLTELATELVN 179

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R D+   RG F V G  +++FP  LE    R+  FG++IEE++ F     +     
Sbjct: 180 AAYSRVDMVERRGEFAVRGGIVDVFPPVLE-HPVRIDFFGDEIEEMTSFAVADQRSTDET 238

Query: 375 ETIKIY-ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
               I       +      + A        K  L +  +   +LE              +
Sbjct: 239 HQELICAPCRELILTDEVRSRA--------KALLTDHPELADMLER-------------I 277

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
               + + +E     L           L + +PE +++ + +  +   + + + R     
Sbjct: 278 GNGQAVEGMEALMPALVDEMEL-----LVDVLPEHAMVVLSDPEMVRSRAADLVRTSEEF 332

Query: 494 KA--------------TLAEYGFR-LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
                            LA  G+R L     +   R   W  +   ++  SAT     L 
Sbjct: 333 LGAGWAAAAGGGQAPIDLAASGYRSLAQVRSHCLERGMAWWSMSSFSLDSSAT---DVLV 389

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
                   Q + P       V +      VE    ++      G  +LL    + MA+ +
Sbjct: 390 DDDITSAPQTVNPQ-----LVAVEPWHGDVEAAVKDLTARLDDGWTVLLCAEGEGMAKRM 444

Query: 599 TEYLYERNIRVRYMHS-------EVKTLERIEIIRDLRLGKFDVLVGIN 640
           +E L E N+  R +             + R+            +LV   
Sbjct: 445 SELLGEHNVAARLVDDVDPDATEPCVQVIRLHQRHGFAAESVKLLVAST 493



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 25/205 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--------RTQVEDVYDEIN 576
            + +SATP    LE     I E     T    PP E              QV      I 
Sbjct: 801 VLAMSATPIPRTLEMAVTGIREMSTIAT----PPEERHPVLTFAGPYDEGQV---VAAIR 853

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
               +  ++       +  E     L E     R +  H ++   +  +I+ D    + D
Sbjct: 854 RELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQLEQIMVDFWERRAD 913

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV   ++  G+DI     + I  AD  G  +    L Q  GR  R+       +     
Sbjct: 914 VLVCTTIVESGIDISTANTLLIDRADLMGLSQ----LHQLRGRVGRSRERGYAYFLYPAD 969

Query: 695 KSIQLAIDETTRRREKQLEHNKKHN 719
           K     + +T   R   +  +    
Sbjct: 970 KP----LSQTAHDRLATMAAHTDLG 990


>gi|260753800|ref|YP_003226693.1| transcription-repair coupling factor [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258553163|gb|ACV76109.1| transcription-repair coupling factor [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 1167

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 78/464 (16%), Positives = 155/464 (33%), Gaps = 68/464 (14%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP-----AIVMAPNKILAAQLYSEFKNFFP 218
           I   E+   L GV    K   ++ +  A+Q        + +A ++  A  +      F P
Sbjct: 8   ILKAEQPLTLSGVENGFKPLILSDLARALQAKSKAGRLVYIASDEQAAHAMADAAGYFAP 67

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI---VV 275
              +  F             P  D      +S +  +   R +    L  R       + 
Sbjct: 68  ELKIISF-------------PAWDCLPYDRASPSLPLSATRIATLHHLQTRPQSPELLIT 114

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +  + +  + +     Q+   L  G  +++++L++ L    Y++ +     G + + G  
Sbjct: 115 TVEAALQRLLTPFRLRQLCQTLAAGVRLDREKLVTLLRAHGYQQSETVSQSGDYAIRGGL 174

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++++P+ L   A R+  FG++IE + +F P T + I  ++   +   S  +     +   
Sbjct: 175 VDLWPAGL-PYALRLDFFGDEIETLRQFDPTTQRSIAEIDKFNLLPASEALLDAENIKRF 233

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
                     R    E  G       L Q ++              +E++          
Sbjct: 234 ----------RSHYREIFGAAATTDPLYQAVS-------EGRRLAGMEHWLPLFE----- 271

Query: 456 EPPPTLFEYIPEDSLLFVDES--HVTIPQISGMYRGDFHRKATLA-EYGFRLPSCMDNRP 512
           E   TL++++ E+  +F D++   V       +     HRK   + E G   P   D   
Sbjct: 272 EKLVTLWDHLAEEDAVFYDQACLKVAEQHFEAIQDYYSHRKNPQSQESGSYRPLKPDLLY 331

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR----SARTQ- 567
           L    W                  + +   I    I     ++D    +       R Q 
Sbjct: 332 LDDAAWQERLQ-------------ISKAHQITAFHIPPAPDVIDLESTLPRDFAPERQQG 378

Query: 568 ---VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
               E V D I     Q  R+++   +K   E LT  L +  ++
Sbjct: 379 SNIYEAVVDYIGALNNQNKRVIIACYSKGSRERLTGLLQDHGLK 422



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 13/189 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + E  +  T  VD    +RS     +   + + +     +
Sbjct: 768 HQLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLA-VRSYVMPWDPVAIREALLREHYR 826

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +  + V       DL ++L E+   +R++  H ++   E    +      KFDVL+  
Sbjct: 827 GGQSFIVVPRISDLADLEKFLSEQVPEIRFVIAHGQMAATEVENRMSAFYDKKFDVLLST 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD+ G  +    L Q  GR  R+           +  S   
Sbjct: 887 TIVESGLDIPSANTMIVYRADRFGLSQ----LYQIRGRVGRSKTRAYAYLTTPVNHS--- 939

Query: 700 AIDETTRRR 708
            I ET  +R
Sbjct: 940 -ISETAEKR 947


>gi|229508016|ref|ZP_04397521.1| transcription-repair coupling factor [Vibrio cholerae BX 330286]
 gi|229511745|ref|ZP_04401224.1| transcription-repair coupling factor [Vibrio cholerae B33]
 gi|229518883|ref|ZP_04408326.1| transcription-repair coupling factor [Vibrio cholerae RC9]
 gi|229607563|ref|YP_002878211.1| transcription-repair coupling factor [Vibrio cholerae MJ-1236]
 gi|229343572|gb|EEO08547.1| transcription-repair coupling factor [Vibrio cholerae RC9]
 gi|229351710|gb|EEO16651.1| transcription-repair coupling factor [Vibrio cholerae B33]
 gi|229355521|gb|EEO20442.1| transcription-repair coupling factor [Vibrio cholerae BX 330286]
 gi|229370218|gb|ACQ60641.1| transcription-repair coupling factor [Vibrio cholerae MJ-1236]
          Length = 1157

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 110/298 (36%), Gaps = 36/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+     +A++  A     ++  P+   A +L  E    F H+ V  F  + +    +
Sbjct: 26  LHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEV-EQFSHSEVALFPDW-ETLPYD 83

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D        I+++I R+     +         +V   + +      +   Q  +
Sbjct: 84  NFSPHQDI-------ISDRISRL----YQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTL 132

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  F +
Sbjct: 133 IVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDFFDD 191

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F P   + I  ++ I++     +    PT   A++  +   + R         
Sbjct: 192 EIDTIRTFDPDNQRSIAEMDEIRLLPAHEF----PTTAAAIEEFRNRWRQR--------- 238

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
             EA+R  + +      +        IE +          E   TLF+Y+P +S L V
Sbjct: 239 -FEARREPESV---YSQVSKGTWPAGIEYWQPLFF-----EHSETLFDYLPANSQLLV 287



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 94/269 (34%), Gaps = 27/269 (10%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
             + ++ATP    L      + +  I  T        I++   Q ED  + + +     +G
Sbjct: 758  ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSEDSVIREAVLREIMRG 816

Query: 583  LRILLT---VLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++      V T    A DL + + E  I V   H +++  E  +++ D    +F++LV 
Sbjct: 817  GQVYFLHNQVETIDKVAADLEKLVPEARITVA--HGQMRERELEKVMNDFYHQRFNLLVC 874

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I 
Sbjct: 875  TTIIETGIDVPTANTIIMDRADSLGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAIT 930

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
               D   R        +        +   +I    + +  E +           + + ++
Sbjct: 931  K--DAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQ 988

Query: 759  KGKAH-------LKSL-----RKQMHLAA 775
              +A        L  L       +M L A
Sbjct: 989  AVEALKSGKEPALDDLLREQTEVEMRLPA 1017



 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A   G ++ + V T    ++  E+  +      IRV  +       E+
Sbjct: 640 GKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQ 699

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            +I++D+  GK D+LVG + LL   +   + GL+ + +  + G  + +        +A R
Sbjct: 700 KQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKV------KAMR 753

Query: 681 NVNSKVILYADTITKSIQLAID----------ETTRRREKQ-LEHNKKHNINPQSVKEKI 729
                + L A  I +++ +A+              RR   +      + ++  ++V  +I
Sbjct: 754 ADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREI 813

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
           M       L +   T   + A    L     +A +     QM      L 
Sbjct: 814 MRGGQVYFLHNQVETIDKVAADLEKLVP---EARITVAHGQMRE--RELE 858



 Score = 37.8 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 76  GEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDN----PLLKNGKIWTPHRSWSI 131
                 S  S   ++  ++ +      V+A  +  +        LL           +  
Sbjct: 531 SSLNLISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKF 590

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAK 187
           +   +    F+    +  + DQ  AI  +L  +  ++   +L+ G  G GKT      A 
Sbjct: 591 HLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAF 650

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           V     +   V+ P  +LA Q +  F++ F +
Sbjct: 651 VATDNGKQVAVLVPTTLLAQQHFENFRDRFAN 682


>gi|15641888|ref|NP_231520.1| transcription-repair coupling factor [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121587314|ref|ZP_01677086.1| transcription-repair coupling factor [Vibrio cholerae 2740-80]
 gi|147674778|ref|YP_001217419.1| transcription-repair coupling factor [Vibrio cholerae O395]
 gi|153823448|ref|ZP_01976115.1| transcription-repair coupling factor [Vibrio cholerae B33]
 gi|227082016|ref|YP_002810567.1| transcription-repair coupling factor [Vibrio cholerae M66-2]
 gi|254848973|ref|ZP_05238323.1| transcription-repair coupling factor [Vibrio cholerae MO10]
 gi|255745354|ref|ZP_05419303.1| transcription-repair coupling factor [Vibrio cholera CIRS 101]
 gi|262153542|ref|ZP_06028671.1| transcription-repair coupling factor [Vibrio cholerae INDRE 91/1]
 gi|262167442|ref|ZP_06035149.1| transcription-repair coupling factor [Vibrio cholerae RC27]
 gi|298498075|ref|ZP_07007882.1| transcription-repair coupling factor [Vibrio cholerae MAK 757]
 gi|9656418|gb|AAF95034.1| transcription-repair coupling factor [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121548474|gb|EAX58532.1| transcription-repair coupling factor [Vibrio cholerae 2740-80]
 gi|126519037|gb|EAZ76260.1| transcription-repair coupling factor [Vibrio cholerae B33]
 gi|146316661|gb|ABQ21200.1| transcription-repair coupling factor [Vibrio cholerae O395]
 gi|227009904|gb|ACP06116.1| transcription-repair coupling factor [Vibrio cholerae M66-2]
 gi|227013784|gb|ACP09994.1| transcription-repair coupling factor [Vibrio cholerae O395]
 gi|254844678|gb|EET23092.1| transcription-repair coupling factor [Vibrio cholerae MO10]
 gi|255737184|gb|EET92580.1| transcription-repair coupling factor [Vibrio cholera CIRS 101]
 gi|262024139|gb|EEY42833.1| transcription-repair coupling factor [Vibrio cholerae RC27]
 gi|262030669|gb|EEY49304.1| transcription-repair coupling factor [Vibrio cholerae INDRE 91/1]
 gi|297542408|gb|EFH78458.1| transcription-repair coupling factor [Vibrio cholerae MAK 757]
          Length = 1155

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 110/298 (36%), Gaps = 36/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+     +A++  A     ++  P+   A +L  E    F H+ V  F  + +    +
Sbjct: 24  LHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEV-EQFSHSEVALFPDW-ETLPYD 81

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D        I+++I R+     +         +V   + +      +   Q  +
Sbjct: 82  NFSPHQDI-------ISDRISRL----YQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTL 130

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  F +
Sbjct: 131 IVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDFFDD 189

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F P   + I  ++ I++     +    PT   A++  +   + R         
Sbjct: 190 EIDTIRTFDPDNQRSIAEMDEIRLLPAHEF----PTTAAAIEEFRNRWRQR--------- 236

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
             EA+R  + +      +        IE +          E   TLF+Y+P +S L V
Sbjct: 237 -FEARREPESV---YSQVSKGTWPAGIEYWQPLFF-----EHSETLFDYLPANSQLLV 285



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 94/269 (34%), Gaps = 27/269 (10%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
             + ++ATP    L      + +  I  T        I++   Q ED  + + +     +G
Sbjct: 756  ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSEDSVIREAVLREIMRG 814

Query: 583  LRILLT---VLTKRM-AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++      V T    A DL + + E  I V   H +++  E  +++ D    +F++LV 
Sbjct: 815  GQVYFLHNQVETIDKVAADLEKLVPEARITVA--HGQMRERELEKVMNDFYHQRFNLLVC 872

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I 
Sbjct: 873  TTIIETGIDVPTANTIIMDRADSLGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAIT 928

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
               D   R        +        +   +I    + +  E +           + + ++
Sbjct: 929  K--DAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQ 986

Query: 759  KGKAH-------LKSL-----RKQMHLAA 775
              +A        L  L       +M L A
Sbjct: 987  AVEALKSGKEPALDDLLREQTEVEMRLPA 1015



 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A   G ++ + V T    ++  E+  +      IRV  +       E+
Sbjct: 638 GKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQ 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            +I++D+  GK D+LVG + LL   +   + GL+ + +  + G  + +        +A R
Sbjct: 698 KQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKV------KAMR 751

Query: 681 NVNSKVILYADTITKSIQLAID----------ETTRRREKQ-LEHNKKHNINPQSVKEKI 729
                + L A  I +++ +A+              RR   +      + ++  ++V  +I
Sbjct: 752 ADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREI 811

Query: 730 MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
           M       L +   T   + A    L     +A +     QM      L 
Sbjct: 812 MRGGQVYFLHNQVETIDKVAADLEKLVP---EARITVAHGQMRE--RELE 856



 Score = 37.8 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 76  GEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDN----PLLKNGKIWTPHRSWSI 131
                 S  S   ++  ++ +      V+A  +  +        LL           +  
Sbjct: 529 SSLNLISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKF 588

Query: 132 NNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAK 187
           +   +    F+    +  + DQ  AI  +L  +  ++   +L+ G  G GKT      A 
Sbjct: 589 HLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAF 648

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           V     +   V+ P  +LA Q +  F++ F +
Sbjct: 649 VATDNGKQVAVLVPTTLLAQQHFENFRDRFAN 680


>gi|314987497|gb|EFT31588.1| transcription-repair coupling factor [Propionibacterium acnes
           HL005PA2]
 gi|314989037|gb|EFT33128.1| transcription-repair coupling factor [Propionibacterium acnes
           HL005PA3]
 gi|315082669|gb|EFT54645.1| transcription-repair coupling factor [Propionibacterium acnes
           HL027PA2]
 gi|328758609|gb|EGF72225.1| transcription-repair coupling factor [Propionibacterium acnes
           HL020PA1]
          Length = 1208

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 85/469 (18%), Positives = 154/469 (32%), Gaps = 68/469 (14%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++      A +  +  K +   +AV Y+ S+ +    E   PRTDT   +   +   
Sbjct: 70  PVLLVTSTFREAEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLR-- 126

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
               R   T         +VV+ V  +             V+L +G+  +  EL + LV 
Sbjct: 127 ----RLCGTEG---EVPQVVVAPVRSLLQPQVAGLGRVAPVRLAVGEEHDLTELATELVN 179

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R D+   RG F V G  +++FP  LE    R+  FG++IEE++ F     +     
Sbjct: 180 AAYSRVDMVERRGEFAVRGGIVDVFPPVLE-HPVRIDFFGDEIEEMTSFAVADQRSTDET 238

Query: 375 ETIKIY-ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
               I       +      + A        K  L +  +   +LE              +
Sbjct: 239 HQELICAPCRELILTDEVRSRA--------KALLTDHPELADMLER-------------I 277

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
               + + +E     L           L + +PE +++ + +  +   + + + R     
Sbjct: 278 GNGQAVEGMEALMPALVDEMEL-----LVDVLPEHAMVVLSDPEMVRSRAADLVRTSEEF 332

Query: 494 KA--------------TLAEYGFR-LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
                            LA  G+R L     +   R   W  +   ++  SAT     L 
Sbjct: 333 LGAGWAAAAGGGQAPIDLAASGYRSLAQVRSHCLERGMAWWSMSSFSLDSSAT---DVLV 389

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
                   Q + P       V +      VE    ++      G  +LL    + MA+ +
Sbjct: 390 DDDITSAPQTVNPQ-----LVAVEPWHGDVEAAVKDLTARLDDGWTVLLCAEGEGMAKRM 444

Query: 599 TEYLYERNIRVRYMHS-------EVKTLERIEIIRDLRLGKFDVLVGIN 640
           +E L E N+  R +             + R+            +LV   
Sbjct: 445 SELLGEHNVAARLVDDVDPDATEPCVQVIRLHQRHGFAAESVKLLVAST 493



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 25/205 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--------RTQVEDVYDEIN 576
            + +SATP    LE     I E     T    PP E              QV      I 
Sbjct: 801 VLAMSATPIPRTLEMAVTGIREMSTIAT----PPEERHPVLTFAGPYDEGQV---VAAIR 853

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
               +  ++       +  E     L E     R +  H ++   +  +I+ D    + D
Sbjct: 854 RELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQLEQIMVDFWERRAD 913

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV   ++  G+DI     + I  AD  G  +    L Q  GR  R+       +     
Sbjct: 914 VLVCTTIVESGIDISTANTLLIDRADLMGLSQ----LHQLRGRVGRSRERGYAYFLYPAD 969

Query: 695 KSIQLAIDETTRRREKQLEHNKKHN 719
           K     + +T   R   +  +    
Sbjct: 970 KP----LSQTAHDRLATMAAHTDLG 990


>gi|149186684|ref|ZP_01864995.1| transcription-repair coupling factor [Erythrobacter sp. SD-21]
 gi|148829592|gb|EDL48032.1| transcription-repair coupling factor [Erythrobacter sp. SD-21]
          Length = 1163

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 133/386 (34%), Gaps = 47/386 (12%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           L  I   +    L  V    +   MA +  A    A+ +AP+      +    + F P  
Sbjct: 4   LSRILKADHPLTLAQVARGAQPLVMADLARAGTGRAVFIAPDDAAMRSVSEAAQFFAPEL 63

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN---DCIVVSS 277
            V  F             P  D+     +S    +   R S+   L         IV ++
Sbjct: 64  DVIEF-------------PAWDSLPYDRASPALTVSAKRLSSLFRLQTGKAKAQLIVTTA 110

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            + +  + +     + + + K G  + +  L   L KQ Y R D  I +G + + G  ++
Sbjct: 111 NAVLQRVLTPFRIRESVREFKPGTEIGRDSLSLLLQKQGYSRTDTVIDKGEYAIRGSIVD 170

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           +FPS L++ A R+  FG+++E +  F P T      +++  +   S  +    ++     
Sbjct: 171 VFPSGLDE-ALRLDFFGDELESLRSFDPNTQMSTGRLDSHLLLPASEALLDEDSIKRF-- 227

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
                   R    E  G       L        E +        +E++          E 
Sbjct: 228 --------RSRYREMFGANATQDPL-------YEAVSEGRRLAGMEHWLPLFE-----ER 267

Query: 458 PPTLFEYIPEDSLLFVDE-----SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
             TLF+++ +   + +D      +   I  I+  Y  D  R A+    G   P   D   
Sbjct: 268 LVTLFDHLDDKDTVVIDNASLAAADERIKDITDYY--DQRRAASGQAKGSYRPLKPDALY 325

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELE 538
           L  EE+      T    AT G  E E
Sbjct: 326 LTDEEFKAALADTPAHRAT-GFDEPE 350



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 78/191 (40%), Gaps = 13/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + ++ATP    L+     + E     T  VD    +R+   + +D+   + +     +
Sbjct: 756 HMLTLTATPIPRTLQMAMTGLRELSTIQTPPVDRLA-VRTYVMEWDDMVMREALLREHHR 814

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +  + V      E ++++L+E    V+++  H ++   E  E +     GK+DVL+  
Sbjct: 815 GGQSFIVVPRISDMEAISDWLHENVPEVKFVAAHGQMGAGEIEERMSAFYEGKYDVLLAT 874

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLD+P    + I  AD  G  +    L Q  GR  R+                 +
Sbjct: 875 TIVESGLDLPSANTIIIHRADIFGLAQ----LYQLRGRVGRSKLRAYAYLTYEKD----V 926

Query: 700 AIDETTRRREK 710
           A+ E   +R K
Sbjct: 927 ALSEVAEKRLK 937


>gi|241762219|ref|ZP_04760301.1| transcription-repair coupling factor [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373266|gb|EER62885.1| transcription-repair coupling factor [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 1167

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 78/464 (16%), Positives = 155/464 (33%), Gaps = 68/464 (14%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP-----AIVMAPNKILAAQLYSEFKNFFP 218
           I   E+   L GV    K   ++ +  A+Q        + +A ++  A  +      F P
Sbjct: 8   ILKAEQPLTLSGVENGFKPLILSDLARALQAKSKAGRLVYIASDEQAAHAMADAAGYFAP 67

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI---VV 275
              +  F             P  D      +S +  +   R +    L  R       + 
Sbjct: 68  ELKIISF-------------PAWDCLPYDRASPSLPLSATRIATLHHLQTRPQSPELLIT 114

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +  + +  + +     Q+   L  G  +++++L++ L    Y++ +     G + + G  
Sbjct: 115 TVEAALQRLLTPFRLRQLCQTLAAGVRLDREKLVTLLRAHGYQQSETVSQSGDYAIRGGL 174

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++++P+ L   A R+  FG++IE + +F P T + I  ++   +   S  +     +   
Sbjct: 175 VDLWPAGL-PYALRLDFFGDEIETLRQFDPTTQRSIAEIDKFNLLPASEALLDAENIKRF 233

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
                     R    E  G       L Q ++              +E++          
Sbjct: 234 ----------RSHYREIFGAAATTDPLYQAVS-------EGRRLAGMEHWLPLFE----- 271

Query: 456 EPPPTLFEYIPEDSLLFVDES--HVTIPQISGMYRGDFHRKATLA-EYGFRLPSCMDNRP 512
           E   TL++++ E+  +F D++   V       +     HRK   + E G   P   D   
Sbjct: 272 EKLVTLWDHLAEEDAVFYDQACLKVAEQHFEAIQDYYSHRKNPQSQESGSYRPLKPDLLY 331

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR----SARTQ- 567
           L    W                  + +   I    I     ++D    +       R Q 
Sbjct: 332 LDDAAWQERLQ-------------ISKAHQITAFHIPPAPDVIDLESTLPRDFAPERQQG 378

Query: 568 ---VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
               E V D I     Q  R+++   +K   E LT  L +  ++
Sbjct: 379 SNIYEAVVDYIGALNNQNKRVIIACYSKGSRERLTGLLQDHGLK 422



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 13/189 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + E  +  T  VD    +RS     +   + + +     +
Sbjct: 768 HQLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLA-VRSYVMPWDPVAIREALLREHYR 826

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +  + V       DL ++L E+   +R++  H ++   E    +      KFDVL+  
Sbjct: 827 GGQSFIVVPRISDLADLEKFLSEQVPEIRFVIAHGQMAATEVENRMSAFYDKKFDVLLST 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD+ G  +    L Q  GR  R+           +  S   
Sbjct: 887 TIVESGLDIPSANTMIVYRADRFGLSQ----LYQIRGRVGRSKTRAYAYLTTPVNHS--- 939

Query: 700 AIDETTRRR 708
            I ET  +R
Sbjct: 940 -ISETAEKR 947


>gi|15836650|ref|NP_297338.1| transcription-repair coupling factor [Xylella fastidiosa 9a5c]
 gi|9104811|gb|AAF82858.1|AE003858_12 transcription-repair coupling factor [Xylella fastidiosa 9a5c]
          Length = 1193

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 106/327 (32%), Gaps = 39/327 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF---PHNAVEYFVSYYDYY 232
           V+ +   + +A   EA + P +++  +   A Q+  + +      P   V  F       
Sbjct: 25  VSPTALAWHIACAAEAHRGPLLLVTHDNHSAHQVEVDLQTLLVHCPELPVIGF------- 77

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYS 291
                 P  +T    + S +  I   R +    L      IVV  V  +   +  +    
Sbjct: 78  ------PDWETLPYDQFSPDPNIVSQRLATLHRLPSLARGIVVVPVQTLMQQLAPLSYIV 131

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
                 K+G  +        L +  Y+     +  G F V G  ++++P    DV  R+ 
Sbjct: 132 GGSFDFKVGQRLVLDAEKQRLERAGYRNVPQVMDPGDFTVRGGLLDVYPMGT-DVPLRIE 190

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +   +I+ I  F P + + +  V+ + +            L   +      L+ R     
Sbjct: 191 LLDEEIDSIRTFDPESQRSLNQVDVVHMLPGREVPLDPAVLERVLVR----LRERFD--- 243

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL--TGRNPGEPPPTLFEYIPEDS 469
                     L+ R +   + L+   +   IE Y      +GR       TLF+Y+  D 
Sbjct: 244 ----------LDTRRSALYQDLKAGLAPSGIEYYLPLFFESGRGGKHATATLFDYLSSD- 292

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKAT 496
            + V  +          +     R   
Sbjct: 293 -VLVLTALGVSNAADAFWAQTMQRYEQ 318



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL + + E  I +   H ++   E   ++ D +   F+VL+   ++  G+DIP   
Sbjct: 872 RMQRDLAQLVPEARIGIA--HGQMPERELERVMLDFQKQHFNVLLSTTIIESGIDIPNAN 929

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +S+
Sbjct: 930 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVVPDRRSM 970


>gi|300917885|ref|ZP_07134518.1| transcription-repair coupling factor [Escherichia coli MS 115-1]
 gi|300414875|gb|EFJ98185.1| transcription-repair coupling factor [Escherichia coli MS 115-1]
          Length = 1164

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          +P P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----DPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|283856518|ref|YP_163381.2| transcription-repair coupling factor [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|283775523|gb|AAV90270.2| transcription-repair coupling factor [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 1167

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 78/464 (16%), Positives = 155/464 (33%), Gaps = 68/464 (14%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP-----AIVMAPNKILAAQLYSEFKNFFP 218
           I   E+   L GV    K   ++ +  A+Q        + +A ++  A  +      F P
Sbjct: 8   ILKAEQPLTLSGVENGFKPLILSDLARALQAKGKAGRLVYIASDEQAAHAIADAAGYFAP 67

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI---VV 275
              +  F             P  D      +S +  +   R +    L  R       + 
Sbjct: 68  ELKIISF-------------PAWDCLPYDRASPSLPLSATRIATLHHLQTRPQSPELLIT 114

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +  + +  + +     Q+   L  G  +++++L++ L    Y++ +     G + + G  
Sbjct: 115 TVEAALQRLLTPFRLRQLCQTLAAGVRLDREKLVTLLRAHGYQQSETVSQSGDYAIRGGL 174

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++++P+ L   A R+  FG++IE + +F P T + I  ++   +   S  +     +   
Sbjct: 175 VDLWPAGL-PYALRLDFFGDEIETLRQFDPTTQRSIAEIDKFNLLPASEALLDAENIKRF 233

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
                     R    E  G       L Q ++              +E++          
Sbjct: 234 ----------RSHYREIFGAAATTDPLYQAVS-------EGRRLAGMEHWLPLFE----- 271

Query: 456 EPPPTLFEYIPEDSLLFVDES--HVTIPQISGMYRGDFHRKATLA-EYGFRLPSCMDNRP 512
           E   TL++++ E+  +F D++   V       +     HRK   + E G   P   D   
Sbjct: 272 EKLVTLWDHLAEEDAVFYDQACLKVAEQHFEAIQDYYSHRKNPQSQESGSYRPLKPDLLY 331

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR----SARTQ- 567
           L    W                  + +   I    I     ++D    +       R Q 
Sbjct: 332 LDDSAWQERLQ-------------ISKAHQITAFHIPPAPDVIDLESTLPRDFAPERQQG 378

Query: 568 ---VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
               E V D I     Q  R+++   +K   E LT  L +  ++
Sbjct: 379 SNIYEAVVDYIGALNNQNKRVIIACYSKGSRERLTGLLQDHGLK 422



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 13/189 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + E  +  T  VD    +RS     +   + + +     +
Sbjct: 768 HQLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLA-VRSYVMPWDPVAIREALLREHYR 826

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +  + V       DL ++L E+   +R++  H ++   E    +      KFDVL+  
Sbjct: 827 GGQSFIVVPRISDLADLEKFLSEQVPEIRFVIAHGQMAATEVENRMSAFYDKKFDVLLST 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD+ G  +    L Q  GR  R+           +  S   
Sbjct: 887 TIVESGLDIPSANTMIVYRADRFGLSQ----LYQIRGRVGRSKTRAYAYLTTPVNHS--- 939

Query: 700 AIDETTRRR 708
            I ET  +R
Sbjct: 940 -ISETAEKR 947


>gi|268599202|ref|ZP_06133369.1| transcription-repair coupling factor [Neisseria gonorrhoeae MS11]
 gi|268603888|ref|ZP_06138055.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID1]
 gi|268682351|ref|ZP_06149213.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID332]
 gi|268583333|gb|EEZ48009.1| transcription-repair coupling factor [Neisseria gonorrhoeae MS11]
 gi|268588019|gb|EEZ52695.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID1]
 gi|268622635|gb|EEZ55035.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID332]
          Length = 1241

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 142/421 (33%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R   V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 39  HKRLKAVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 85

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 86  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 145

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E   +R+ +F ++I+ I  F   T + 
Sbjct: 146 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDGIKTFDTDTQRT 204

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 205 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 247

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 248 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWND 300

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 301 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 346

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q +D    + +       RILL   +    E +  +L +  ++ 
Sbjct: 347 AHSLPDLAV-----NRQSDDPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKA 401

Query: 610 R 610
           +
Sbjct: 402 K 402



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 844  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 900

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 901  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 958

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 959  LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1007

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1008 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1044

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1045 GAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDL 1077


>gi|320540384|ref|ZP_08040034.1| putative transcription-repair coupling factor [Serratia symbiotica
           str. Tucson]
 gi|320029315|gb|EFW11344.1| putative transcription-repair coupling factor [Serratia symbiotica
           str. Tucson]
          Length = 1158

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 108/295 (36%), Gaps = 36/295 (12%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           GS      A+++E    P +++AP+   A +L  E +  F    V     +         
Sbjct: 32  GSACAVECAEIVERHNGPVMLIAPDMQNALRLRDEIQQ-FTDQRVTTLSDW--------- 81

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
               +T      S ++ I   R S+   L      +++   + +  +   E      + L
Sbjct: 82  ----ETLPYDGFSPHQDIISARLSSLYHLPTMAHGVILPVNTLMQRVCPHEFLHGYALVL 137

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           K G  + + +L S L +  Y+     +  G F   G   +++P   E+  +R+  F ++I
Sbjct: 138 KKGQRLSRDKLRSQLEQAGYRSVAQVMAHGEFATRGALFDLYPMGSEE-PYRIDFFDDEI 196

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           + +  F   + + +  V+ I +     +    PT   A++  + + + +           
Sbjct: 197 DSLRTFEVDSQRTLSEVDAINLLPAHEF----PTDKNAIELFRSQWREQFDVRRDP---- 248

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
                     +  + +        +E +          +P P+LF Y+P ++L+ 
Sbjct: 249 ---------EHIYQQVSKGNWPAGVEYWQPLFFS----QPLPSLFSYLPANTLIV 290



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 65/178 (36%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + +  V + I     +
Sbjct: 758 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLM--VREAILREVLR 815

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E   + L E     R    H +++      ++ D    +F+VLV  
Sbjct: 816 GGQVYYLYNDVENIEKAEQKLAELVPEARIAIGHGQMRERNLERVMNDFHHQRFNVLVCT 875

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DI     + I  AD+ G  +    L Q  GR  R+ +           +++
Sbjct: 876 TIIETGIDIASANTIIIERADRFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPQAM 929


>gi|58581095|ref|YP_200111.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425689|gb|AAW74726.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 1154

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 105/292 (35%), Gaps = 34/292 (11%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           + +   +++A+  EA   P +V+A +   A Q+ ++       ++            P  
Sbjct: 26  SPTALAWSIARAAEAHAGPLLVIARDNQSAHQIEADLHALLGEHSAL----------PVV 75

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIV 295
             P  +T    + S + +I   R +A   L   +  +V+  V   +  +  +        
Sbjct: 76  PFPDWETLPYDQFSPHPEIISQRLAALHRLPGLSKGVVIVPVQTLLQQLAPLSYIVGGSF 135

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L +G  ++       L    Y+     +  G F V G  +++FP    D   RV +   
Sbjct: 136 DLIVGQRLDLGAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPM-GADTPLRVELLDE 194

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ I  F P + + +  VE +K+           ++   +      L+ R         
Sbjct: 195 DIDSIRVFDPESQRSLDKVEAVKMLPGREVPMDDASVERVLAC----LRERFD------- 243

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                 ++ R +   + L++  +   IE Y      +       TLF+Y+ +
Sbjct: 244 ------VDTRRSALYQDLKSGLAPSGIEYYLPMFFAKT-----ATLFDYLDK 284



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I +   H ++   E   ++ D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRDLSELVPEARIGIA--HGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +++
Sbjct: 890 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVVPDRRAM 930


>gi|84623030|ref|YP_450402.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84366970|dbj|BAE68128.1| transcription-repair coupling factor [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 1154

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 105/292 (35%), Gaps = 34/292 (11%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           + +   +++A+  EA   P +V+A +   A Q+ ++       ++            P  
Sbjct: 26  SPTALAWSIARAAEAHAGPLLVIARDNQSAHQIEADLHALLGEHSAL----------PVV 75

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIV 295
             P  +T    + S + +I   R +A   L   +  +V+  V   +  +  +        
Sbjct: 76  PFPDWETLPYDQFSPHPEIISQRLAALHRLPGLSKGVVIVPVQTLLQQLAPLSYIVGGSF 135

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L +G  ++       L    Y+     +  G F V G  +++FP    D   RV +   
Sbjct: 136 DLIVGQRLDLGAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPM-GADTPLRVELLDE 194

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ I  F P + + +  VE +K+           ++   +      L+ R         
Sbjct: 195 DIDSIRVFDPESQRSLDKVEAVKMLPGREVPMDDASVERVLAC----LRERFD------- 243

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                 ++ R +   + L++  +   IE Y      +       TLF+Y+ +
Sbjct: 244 ------VDTRRSALYQDLKSGLAPSGIEYYLPMFFAKT-----ATLFDYLDK 284



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I +   H ++   E   ++ D +  +F+VL+   ++  G+DIP   
Sbjct: 832 RMQRDLSELVPEARIGIA--HGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNAN 889

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +++
Sbjct: 890 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVVPDRRAM 930


>gi|209964568|ref|YP_002297483.1| transcription-repair coupling factor [Rhodospirillum centenum SW]
 gi|209958034|gb|ACI98670.1| transcription-repair coupling factor [Rhodospirillum centenum SW]
          Length = 1209

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 98/504 (19%), Positives = 167/504 (33%), Gaps = 73/504 (14%)

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +A +   AA+L      F P   V  F             P  D       S N  I   
Sbjct: 45  VATDDARAARLAEAVSFFDPGIEVILF-------------PAWDCLPYDRVSPNGDIVAR 91

Query: 259 RHSATRSLLE-----RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           R  A   LLE     R   +V +  + ++ +    ++     + ++GD +   EL   L 
Sbjct: 92  RIDALTRLLEPAAKDRALLLVTTVNAALHKVPPRLAFRNASFRARVGDRINLPELQRFLA 151

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
              Y +       G F V G  +++FP    +   R+ +FG+D++ +  F P+T      
Sbjct: 152 NNGYTKAQTVREPGEFAVRGGIVDLFPPGTAE-PLRLDLFGDDLDGVRAFDPMTQLTTEK 210

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            +   +   S       +++      +E                    L   +T D  + 
Sbjct: 211 RDGFVLKPMSEVFLDEMSISRFRTGYRE--------------------LFGAVTGDDPLY 250

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE-SHVTIPQISGMYRGDFH 492
           E   + +       +L   + G    TLF+Y+P D+ + +D        Q     R  F 
Sbjct: 251 EAVSAGRKYAGMEHWLPLFHSGLE--TLFDYMP-DAPVTLDPHVEEARDQRLEQVRDFFE 307

Query: 493 RKATLAEYG-------FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
            + TL E         +R P       L  E W+       V   TP +         + 
Sbjct: 308 ARRTLQEAEKKSGNPVYR-PVPPGMTVLDAEGWDLHLAVRPVAQLTPFAAAEAGSNPDLT 366

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           +   R  G       ++S     + + + +      G R+++   +    + L   L E 
Sbjct: 367 DAGGRK-GRDFADARVQSGVNVYDVLREHVGALLADGRRVVVAGYSTGARDRLRSVLKEH 425

Query: 606 NI-RVRYMHS--EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            I RV+ + S  EV+ L R             VL     L  G   P  GL  I + D  
Sbjct: 426 GIERVKAVESWAEVEGLPRTTT-------ALVVL----ALDHGFTAP--GLAVITEQDIL 472

Query: 663 GFLRSKTSLIQTIGRAARNVNSKV 686
           G       L++  GR  R   + +
Sbjct: 473 G-----DRLVRAGGRKKRRAANFI 491



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 11/162 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
             + ++ATP    L+     + E  +  T  VD       +      V  + + I     
Sbjct: 769 HVLTLTATPIPRTLQLALSGVRELSLIATPPVDRLAVRTFVLPYDPVV--IREAILREHY 826

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G +           E +   L E    V+ +  H ++   +  E++      K+DVL+ 
Sbjct: 827 RGGQSFYVCPRIEDLERVRLQLEELVPEVKVVVAHGQMPASQLEEVMTAFDEHKYDVLLA 886

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            N++  GLDIP    + +  AD  G  +    L Q  GR  R
Sbjct: 887 TNIIESGLDIPSANTLVVHRADLFGLAQ----LYQVRGRVGR 924


>gi|268684509|ref|ZP_06151371.1| transcription-repair coupling factor [Neisseria gonorrhoeae
           SK-92-679]
 gi|268624793|gb|EEZ57193.1| transcription-repair coupling factor [Neisseria gonorrhoeae
           SK-92-679]
          Length = 1241

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 142/421 (33%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R   V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 39  HKRLKAVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 85

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 86  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 145

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E   +R+ +F ++I+ I  F   T + 
Sbjct: 146 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDGIKTFDTDTQRT 204

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 205 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 247

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 248 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWND 300

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 301 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 346

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q +D    + +       RILL   +    E +  +L +  ++ 
Sbjct: 347 AHSLPDLAV-----NRQSDDPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKA 401

Query: 610 R 610
           +
Sbjct: 402 K 402



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 844  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 900

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 901  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 958

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 959  LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1007

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1008 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1044

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1045 GAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDL 1077


>gi|240080515|ref|ZP_04725058.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae FA19]
 gi|240113117|ref|ZP_04727607.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae MS11]
 gi|240118171|ref|ZP_04732233.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae PID1]
 gi|240123719|ref|ZP_04736675.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae PID332]
 gi|268596647|ref|ZP_06130814.1| transcription-repair coupling factor [Neisseria gonorrhoeae FA19]
 gi|268550435|gb|EEZ45454.1| transcription-repair coupling factor [Neisseria gonorrhoeae FA19]
          Length = 1234

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 142/421 (33%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R   V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKAVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E   +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDGIKTFDTDTQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWND 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q +D    + +       RILL   +    E +  +L +  ++ 
Sbjct: 340 AHSLPDLAV-----NRQSDDPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 837  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 893

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 894  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 951

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 952  LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1000

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1001 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1037

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1038 GAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDL 1070


>gi|87199999|ref|YP_497256.1| transcription-repair coupling factor [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135680|gb|ABD26422.1| transcription-repair coupling factor [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 1164

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 62/319 (19%), Positives = 115/319 (36%), Gaps = 39/319 (12%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           L  I S +    L  V    +   +A +  A +   + +AP++     +      F P  
Sbjct: 4   LDRILSAKSPLTLSSVARGAQPLVLADLARAARGRTVFIAPDEAAMRAIVDSAAYFAPDL 63

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL---LERNDCIVVSS 277
            V  F             P  D      +S    +   R +A + L         +V + 
Sbjct: 64  DVIDF-------------PAWDCLPFDRASPALSVSARRLAALQKLQHTRSGPQLLVTTI 110

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            + +  + +     +    L  G  + ++ L++ L +Q Y R D  +  G + V G   +
Sbjct: 111 NAALQRVLTPFRIRESTRLLTPGTEIGRESLIALLQRQGYSRTDTVVDAGEYAVRGSVFD 170

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFPS L D   R+  FG+++E +  F P T + ++ VET  +   S  +    ++     
Sbjct: 171 IFPSGL-DHGLRLDFFGDELETLRLFDPNTQRSVQPVETHLLLPASEALLDEDSIKRF-- 227

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
                   R    E  G       L Q I+              +E++      R     
Sbjct: 228 --------RSRYREMFGANATGDPLYQAIS-------DGRRLAGMEHWLPLFEDR----- 267

Query: 458 PPTLFEYIPEDSLLFVDES 476
             TLF+++ E+ L+ +D +
Sbjct: 268 VVTLFDHLGENDLVLIDTT 286



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 75/192 (39%), Gaps = 15/192 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
             + ++ATP    L+     + E     T  VD       +      V  + + +    Q
Sbjct: 761 HVLTLTATPIPRTLQMAMSGLRELSTIQTPPVDRLATRTYVMPWDDMV--MREALLREHQ 818

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G +  + V       +L E+L      VR++  H ++   E  + +      K++VL+ 
Sbjct: 819 RGGQSFIVVPRIADMPELEEWLRLNVPEVRFVTAHGQMSPTEVEDRMGAFYEKKYEVLLS 878

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DIP    + I  AD+ G  +    L Q  GR  R    K+  YA        
Sbjct: 879 TTIVESGIDIPSANTIVIHRADRFGLAQ----LYQLRGRVGR---GKIRAYAYLTVPE-D 930

Query: 699 LAIDETTRRREK 710
           +A+ E   +R K
Sbjct: 931 MALSEVAEKRLK 942


>gi|327335135|gb|EGE76846.1| transcription-repair coupling factor [Propionibacterium acnes
           HL097PA1]
          Length = 1208

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 85/469 (18%), Positives = 151/469 (32%), Gaps = 68/469 (14%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++      A +  +  K +   +AV Y+ S+ +    E   PRTDT   +   +   
Sbjct: 70  PVLLVTSTFREAEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLR-- 126

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
               R   T         +VV+ V  +             V+L +G+  +  EL + LV 
Sbjct: 127 ----RLCGTEG---EVPQVVVAPVRSLLQPQVAGLGRVAPVRLAVGEEHDLTELATELVN 179

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R D+   RG F V G  +++FP  LE    R+  FG++IEE++ F     +     
Sbjct: 180 AAYSRVDMVERRGEFAVRGGIVDVFPPVLE-HPVRIDFFGDEIEEMTSFAVADQRSTDET 238

Query: 375 ETIKIY-ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
               I       +      + A        K  L +  +   +LE              +
Sbjct: 239 HQELICAPCRELILTDEVRSRA--------KALLTDHPELADMLER-------------I 277

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGD 490
               + + +E     L           L + +PE +++ + +    H     +       
Sbjct: 278 GNGQAVEGMEALMPALVDEMEL-----LVDVLPEHAMVVLSDPEMVHSRAADLVRTSEEF 332

Query: 491 FHRKA-----------TLAEYGFR-LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
                            LA  G+R L     +   R   W  +   ++  SAT     L 
Sbjct: 333 LGAGWAAVAGGGQAPIDLAASGYRSLAQVRSHCLERGMAWWSMSSFSLDSSAT---DVLV 389

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
                   Q + P       V +      VE    ++      G  +LL    + MA+ +
Sbjct: 390 DDDITSAPQTVNPQ-----LVAVEPWHGDVEAAVKDLTARLDDGWTVLLCAEGEGMAKRM 444

Query: 599 TEYLYERNIRVRYMHS-------EVKTLERIEIIRDLRLGKFDVLVGIN 640
           +E L E N+  R +             + R+            +LV   
Sbjct: 445 SELLGEHNVAARLVDDVDPDATEPCVQVIRLHQRHGFAAESVKLLVAST 493



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 25/205 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--------RTQVEDVYDEIN 576
            + +SATP    LE     I E     T    PP E              QV      I 
Sbjct: 801 VLAMSATPIPRTLEMAVTGIREMSTIAT----PPEERHPVLTFAGPYDEGQV---VAAIR 853

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
               +  ++       +  E     L E     R +  H ++   +  +I+ D    + D
Sbjct: 854 RELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQLEQIMVDFWERRAD 913

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV   ++  G+DI     + I  AD  G  +    L Q  GR  R+       +     
Sbjct: 914 VLVCTTIVESGIDISTANTLLIDRADLMGLSQ----LHQLRGRVGRSRERGYAYFLYPAD 969

Query: 695 KSIQLAIDETTRRREKQLEHNKKHN 719
           K     + +T   R   +  +    
Sbjct: 970 KP----LSQTAHDRLATMAAHTDLG 990


>gi|85059053|ref|YP_454755.1| transcription-repair coupling factor [Sodalis glossinidius str.
           'morsitans']
 gi|84779573|dbj|BAE74350.1| transcription-repair coupling factor [Sodalis glossinidius str.
           'morsitans']
          Length = 1150

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 116/311 (37%), Gaps = 38/311 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + ++   +L+LG +TG+      A +++    P +++  +   A +L+ E   F      
Sbjct: 9   LPTQAGKKLILGQLTGAAVAVECAAIVDRYSGPVLLITTDMQSALRLHDEILQF------ 62

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                    + P   +P  +T      S +++I   R +    L      +++  V+ + 
Sbjct: 63  --------THHPVLTLPDWETLPYDSFSPHQEIISDRIATLYRLPSLARGVIILPVNTLM 114

Query: 283 GIGSVESYSQMIVQL-KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                 ++      L   G  + +  L + L +  Y+  D  +  G F   G  ++++P 
Sbjct: 115 QRVCPHTFLHRHTLLMTKGQRLSRDTLRAQLEQAGYRSVDQVLEHGEFATRGALLDLYPM 174

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E+  +R+  F ++I+ +  F   T + ++ + +I +     +    PT   A++  + 
Sbjct: 175 GSEE-PYRIDFFDDEIDSLRIFDVDTQRTLQEMASINLLPAHEF----PTDKAAIELFRS 229

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + + +                     +  + +        IE +          EP   L
Sbjct: 230 QWREQFDVRRDA-------------EHIYQQVSKGTLPAGIEYWQPLFFS----EPLVPL 272

Query: 462 FEYIPEDSLLF 472
           F Y+P D+L+ 
Sbjct: 273 FSYLPADTLVV 283



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 63/177 (35%), Gaps = 9/177 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  I  T      + +++   Q + +   + I     +G
Sbjct: 752 ILTLTATPIPRTLNMAMSGMRDLSIIAT-PPARRLTVKTFVRQYDALVVREAILREVLRG 810

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E     L       R    H +++  E   ++ D    +F+VLV   
Sbjct: 811 GQVYYLYNDVENIEKAARCLETLVPEARIAIGHGQLRERELERVMNDFHHQRFNVLVCTT 870

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++  G+DI     + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 871 IIETGIDIANANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAL 923



 Score = 38.5 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            + P+ DQ  AI  +L  +       +L+ G  G GKT      A +     +   V+ P
Sbjct: 599 PFEPTVDQSQAINAVLSDMCQPLSMDRLICGDVGFGKTEVAMRAAFLAIENHKQVAVLVP 658

Query: 202 NKILAAQLYSEFKNFFPHNAV 222
             +LA Q +  F++ F +  V
Sbjct: 659 TTLLAQQHFDNFRDRFANWPV 679


>gi|328543941|ref|YP_004304050.1| Mfd, transcription-repair coupling factor [polymorphum gilvum
           SL003B-26A1]
 gi|326413685|gb|ADZ70748.1| Mfd, transcription-repair coupling factor [Polymorphum gilvum
           SL003B-26A1]
          Length = 1166

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 112/343 (32%), Gaps = 41/343 (11%)

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
           + +        L GV    + + +AKV+    R  + +      AA++          +A
Sbjct: 3   ESLLQHRGNITLAGVPDGAEAYALAKVLAESDRAGLALVFVARDAARM------QMIADA 56

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-----NDCIVVS 276
           + +F    D  Q    +P  D       S    +   R     +L           ++ +
Sbjct: 57  LAFFSPATDVLQ----LPAWDCLPYDRVSPTPAVSARRLLVLGALARGLAQNSQTVLLTT 112

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
             + +  + + +  +     L  G+ ++   + + L    + R       G + V G  +
Sbjct: 113 CNAAVQRMPARDWMAHQTFSLAPGNRIDLSRIAAWLDLNGFSRTPTVRETGEYAVRGGIV 172

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +++ +   D   R+  FG+ +E I  F P T +  R +    +   S  V     ++   
Sbjct: 173 DLY-APGSDEPVRLDFFGDTLESIRAFDPETQRTTRQLRRHDLVPMSEVVLTEEAVSRF- 230

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
                    R   L + G       L Q I+              +E++          E
Sbjct: 231 ---------RRAYLARFGAARRDDVLYQSIS-------EGRRYPGMEHWLPLFH-----E 269

Query: 457 PPPTLFEYIPEDSLLFVDESHVTI--PQISGMYRGDFHRKATL 497
              TLF++I  D+ L  D +   +   +   +      RK  L
Sbjct: 270 RLETLFDFIG-DTPLIFDSAAADVARERFDQVDEHYAARKDAL 311



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 73/191 (38%), Gaps = 13/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 765 HVLTLSATPIPRTLQLALTGVRELSLIATPPVDRLA-VRTFVSPFDPIVVREALLREHYR 823

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +            +  E+L E    ++V   H ++   +  +++     GK+DVL+  
Sbjct: 824 GGQSFYVCPRVSDLAETAEFLAESVPEVKVAVAHGQMAPGQLDDVMNAFYEGKYDVLLST 883

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+          
Sbjct: 884 TIVESGLDIPTANTLIVHRADMFGLAQ----LYQLRGRVGRSKVRAYALFTVP----ANK 935

Query: 700 AIDETTRRREK 710
            +  T  RR K
Sbjct: 936 TLTATAERRLK 946



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 4/120 (3%)

Query: 107 ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS 166
            R+++  + L++         +  +         F  +  Y  + DQ  AI  +   + S
Sbjct: 574 KRILEIADGLIRTAAARALKTAPVVETPEGAYDEFATRFPYEETEDQLNAIDAVFADLAS 633

Query: 167 REK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
                +L+ G  G GKT      A V     R   V+ P  +LA Q Y  F   F    V
Sbjct: 634 GRPMDRLVCGDVGFGKTEVALRAAFVAALSGRQVAVVVPTTLLARQHYKTFAERFHGLPV 693


>gi|303257068|ref|ZP_07343082.1| transcription-repair coupling factor [Burkholderiales bacterium
           1_1_47]
 gi|302860559|gb|EFL83636.1| transcription-repair coupling factor [Burkholderiales bacterium
           1_1_47]
          Length = 1157

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 63/438 (14%), Positives = 148/438 (33%), Gaps = 52/438 (11%)

Query: 176 VTGSGKTFTMAK---VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
             GS    ++A+    ++   +   V+  +     +L  E   F P   +  F  + +  
Sbjct: 30  PAGSALAMSIAQNAVQLKKQNKLLTVICSDPSDVIRLQDEVTWFDPSLKLTVFPDW-ETL 88

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
             +   P  D   E+  ++   ++R +        +  D ++VS+ +    +        
Sbjct: 89  PYDVLSPHADLVGERLQTLYLLLNRQKRQ------DPVDVLIVSASTATQRLAPRNYIGS 142

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
                + GD ++  +L + LV + Y+     +  G F   G  +++FP       +R+  
Sbjct: 143 TTFFFRKGDRIDPTDLRAELVARGYEHVSQVVAPGEFASRGGLLDLFPMGSA-KPYRLDF 201

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           F ++++EI  F P   + +  V+ I++     +   +   +          + R      
Sbjct: 202 FDDELDEIRVFDPDNQRSVEKVDEIRLLPAHEFPMDKEARSAFCS------RWRETFEGD 255

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS-LL 471
             ++              + +E   +   +ENY          +   TLF+YI  D+ L+
Sbjct: 256 PSKVT-----------LYKDIENGIAAPGVENYLPLFF-----DETETLFDYIGSDASLI 299

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            + + +  I       +    R   L   G R         L   ++  L      +S T
Sbjct: 300 LLGDVNSAIEHFD---KETEQRAKFLRADGERPILDFKRLYLSASQFFELAGNYARLSLT 356

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
                         ++           +E R     +E +    +L + +  ++L+   +
Sbjct: 357 --------------DKETATPNFPSVAIE-RRKDDSLEGLKAYKDLCSARSRKLLVMANS 401

Query: 592 KRMAEDLTEYLYERNIRV 609
               E +++   E  ++ 
Sbjct: 402 AGRLETISDVFKENGLKA 419



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 80/240 (33%), Gaps = 34/240 (14%)

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLR-- 522
             +  L+ +DE H    +     +        L      +P  +        +++ +   
Sbjct: 735 FKDLGLVVIDEEHRFGVRQKEQLKSLRSEVDILTLTATPIPRTLSMSLEGIRDFSVIATA 794

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
           P   +   T   +   +   +I E ++R                QV  +++E+       
Sbjct: 795 PQKRLAIKT---FVQRESDSLIREAVLRELKR----------GGQVYFLHNEVETIENAR 841

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           +R             L + L E  I V   H ++   E   ++RD    + +VL+   ++
Sbjct: 842 MR-------------LDQLLPEARIGVA--HGQMNERELERVMRDFYAQRTNVLLCTTII 886

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
             G+DIP    + +  ADK G  +    L Q  GR  R+ +            ++    +
Sbjct: 887 ETGIDIPNANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPGEGAMTKNAE 942


>gi|167627778|ref|YP_001678278.1| transcription-repair coupling factor [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597779|gb|ABZ87777.1| transcription-repair coupling factor [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 1139

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 51/329 (15%), Positives = 117/329 (35%), Gaps = 34/329 (10%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K  ++    GS  +    + ++      +++A +   A ++Y E K     + +E F   
Sbjct: 9   KDTIVSNAYGSSFSILFNEYLKQNCDFNLIVAEDSQQAHRVYDELKYLNKDSKIEVF--- 65

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
              Y P   +   D +      I+ + + +          +N  ++ S  + +  +   +
Sbjct: 66  ---YFPNLEILPYDRFSAAIDIISRRQEILHKLTQN---PKNTLVITSISNTLRKLPPAK 119

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
              +    LK GDS++  +    L +  Y   +    +G F + G  I+IFP     VA+
Sbjct: 120 FIKEHSFILKTGDSLDITKQKVLLTEAGYTLVNNVFEKGEFSIRGSIIDIFPV-GSKVAF 178

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+ +F ++++ I E    T +  + +++I I  +   +      + A+  +K     +  
Sbjct: 179 RIDLFDDEVDTIKELDTETQRSGKEIKSINIMPSHELIYNSQNTSFALGKLKILCGEQSQ 238

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
                                   ++       IE Y              +LF+Y+P+ 
Sbjct: 239 NST-----------------IATYIKNNEYFSGIEFYLPLFYPEL-----VSLFDYLPKS 276

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATL 497
           + + + ++      I        +R   L
Sbjct: 277 ANIHLIDN--ISNSIEAFSEEVKYRYNEL 303



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 17/189 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +  I    P   +     ++     +  + + ++    +
Sbjct: 747 ILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDNNI--IREAVSRETIR 804

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +I          ++  E L E      I +   H ++   E  +I+ D +  K+ +L+
Sbjct: 805 GGQIFYLYNKVDTIQKKKEILQELFPRLRIAIA--HGQMSEKEIQKIMFDFKHNKYHILL 862

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I DA+  G  +    L Q  GR  R+ +            SI
Sbjct: 863 CTTIIETGIDIPNANTLIIEDANNLGLAQ----LHQLRGRVGRSHHQAYAYMLVPSEGSI 918

Query: 698 QLAIDETTR 706
               D T R
Sbjct: 919 TK--DATKR 925



 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTFT---MAKVIE 190
            ++   F     Y  + DQ  AI  + K  I ++   +L+ G  G GKT      A +  
Sbjct: 583 EEEYLRFCADFPYEETPDQLLAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLAT 642

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
             Q+   ++ P  ILA Q Y+ FK+ F + AV
Sbjct: 643 QNQKQVAILVPTTILAQQHYNSFKDRFANTAV 674


>gi|56413798|ref|YP_150873.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362721|ref|YP_002142358.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128055|gb|AAV77561.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094198|emb|CAR59702.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 1148

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 53/310 (17%), Positives = 121/310 (39%), Gaps = 36/310 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + ++   Q  LG +TG+     +A++ E    P +++AP+   A +L+ E + F   + +
Sbjct: 9   LPTKAGDQCQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT--DQM 66

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
              ++ ++    +++ P  +    + S++ +     R             ++V   + + 
Sbjct: 67  VMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQ 115

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +          + +K G  + +  L + L    Y+  D  +  G +   G  +++FP  
Sbjct: 116 RVCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E   +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + +
Sbjct: 176 SE-QPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E +R  + I    + +        IE +          EP P LF
Sbjct: 231 WRDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLF 273

Query: 463 EYIPEDSLLF 472
            Y P ++L+ 
Sbjct: 274 SYFPANTLVV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|240016396|ref|ZP_04722936.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae FA6140]
 gi|240125910|ref|ZP_04738796.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae SK-92-679]
          Length = 1234

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 142/421 (33%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R   V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKAVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E   +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDGIKTFDTDTQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWND 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q +D    + +       RILL   +    E +  +L +  ++ 
Sbjct: 340 AHSLPDLAV-----NRQSDDPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 837  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 893

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 894  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 951

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 952  LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1000

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1001 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1037

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1038 GAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDL 1070


>gi|241760119|ref|ZP_04758217.1| transcription-repair coupling factor [Neisseria flavescens SK114]
 gi|241319573|gb|EER56003.1| transcription-repair coupling factor [Neisseria flavescens SK114]
          Length = 1134

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 82/505 (16%), Positives = 169/505 (33%), Gaps = 79/505 (15%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  +   A +L + ++ F PH+                ++P  +T   +  S ++ + 
Sbjct: 37  VVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSPHQDLV 83

Query: 257 RMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
             R SA   +     D + V   + +  +  V   +     LK G +++   L S LV  
Sbjct: 84  SERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDA 143

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V 
Sbjct: 144 GYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVS 202

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I++     + T            +EE+                           + +  
Sbjct: 203 EIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVYKAVSN 245

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
                 +E Y              TLF+YI ED+L     S   +   +  +  D   + 
Sbjct: 246 GHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSDVKSRY 298

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            +A+     P               L P  + +SA   +  L+    ++ +   +   L 
Sbjct: 299 AMAQGDETYPP--------------LLPQYLYLSADVFAGRLKNYGQVLPDVSGKEHTLP 344

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           D  V       Q ++    +         RILL   +    E +  +L +  ++ +   S
Sbjct: 345 DLAV-----NRQSDEPLQALKDFQTVFDGRILLCAESLGRRETMLGFLQQNGLKAK---S 396

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
                  +     L       ++ +  L  G  + +  +  I ++D          L Q 
Sbjct: 397 VPDWQGFLSAHEPL-------MITVAPLAYGFKLEDQNIAVITESD----------LYQY 439

Query: 675 IGRAARNVNSKVILYADTITKSIQL 699
           + R+ ++   K    +D + + +  
Sbjct: 440 VARSRKHHRKKHAAVSDGLLRDLAE 464



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525 TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
            + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 739 ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 795

Query: 581 QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 796 RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 853

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 854 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYSYL------- 902

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                  + P+ + +   + +D I   D        A  ++ I 
Sbjct: 903 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 939

Query: 750 AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                L + +    ++   +L  +M   A  +L
Sbjct: 940 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 972


>gi|319896952|ref|YP_004135147.1| transcription-repair coupling factor [Haemophilus influenzae F3031]
 gi|317432456|emb|CBY80811.1| transcription-repair coupling factor [Haemophilus influenzae F3031]
          Length = 1146

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 58/335 (17%), Positives = 122/335 (36%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V  S     ++++ E  Q   +V+ P+   A +L          N  
Sbjct: 10  IPTQPNDHKILGNVLPSADALAISEIAEQNQNLTVVVTPDTRSAVRLSRVLSELSSQNVC 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
            +              P  +T      S +++I   R SA   L      I +  +S + 
Sbjct: 70  LF--------------PDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLM 115

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K GD +   ++   L    Y+  +  +  G + V G  +++FP 
Sbjct: 116 QRLCPPQYLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  + +I +     +    PT +  +++ + 
Sbjct: 176 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLDEINSINLLPAHEF----PTDDKGIEFFRA 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +              TL
Sbjct: 231 QFRETFGEIRRDPEHIYQQ------------VSKGTLISGIEYWQPLFFAEM-----ATL 273

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+Y+PE +L    E++ T  Q    Y+    R   
Sbjct: 274 FDYLPEQTLFVDMENNQT--QGERFYQDAKQRYEQ 306



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 12/187 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +D+   + I     +G
Sbjct: 753 ILTLTATPIPRTLNMAMNGIRDLSIIST-PPARRLSIKTFVRQNDDLVVREAILREILRG 811

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++  E   ++ D    +++VLV   
Sbjct: 812 GQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCST 871

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +   
Sbjct: 872 IIETGIDVPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKMMTK- 926

Query: 701 IDETTRR 707
             +  RR
Sbjct: 927 --DAERR 931


>gi|313891693|ref|ZP_07825300.1| transcription-repair coupling factor [Dialister microaerophilus
           UPII 345-E]
 gi|313119971|gb|EFR43156.1| transcription-repair coupling factor [Dialister microaerophilus
           UPII 345-E]
          Length = 1126

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 17/223 (7%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K+ ++ G  G+ K +  +  I       +++ P +        + K F P   V +F   
Sbjct: 58  KINMISGAFGAQKAYLTS--ILKNNNSTLIIVPEQKDIFLWNQDIKFFMPEKQVLFF--- 112

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS-VSCIYGIGSV 287
                     P  D    + +  + +  R R  +  +L +  D +V++S V  +  I S 
Sbjct: 113 ----------PIMDKVNFEVTYSSTERLRDRVQSLAALYDNKDVVVIASIVEVMQKIPSK 162

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
            +  Q    + + D + +  +L+ LV   Y+R D     G F + GD ++IF S  E+  
Sbjct: 163 INVIQKTWTISLQDEIVRGRILNKLVDLGYERVDQVERVGHFSIRGDILDIF-SINEENP 221

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
            R+  FG+ ++ I  F   T + +  +    I+  +  +    
Sbjct: 222 IRIEFFGDVVDNIRYFNKDTQRSVSGLNKATIFPVTIGMETDD 264



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 68/196 (34%), Gaps = 28/196 (14%)

Query: 525 TIVVSATPGSWELEQCQG------IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
            + +SATP    L            I +       +    +E        ED+  E  L 
Sbjct: 727 ILTLSATPIPRTLHMSLSGVRDMAAITQAPQNRHAVQTYVIEYN------EDIVKEAVLR 780

Query: 579 AQQGLRILLTVLTK-----RMAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGK 632
            ++    +  V  +      M + L +    +  I V Y    +K  E  +++ D    K
Sbjct: 781 EKERNGQVYFVYNRIESIDMMKDRLEKIFKGKVRIGVAY--GRMKGSELEKVMFDFYQDK 838

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           +D+L+   L+  GLD P    + I DAD  G  +    L Q  GR  R+       +   
Sbjct: 839 YDLLLCTTLIENGLDQPNANTIIIYDADFMGLSQ----LYQMKGRVGRSDKIAKAYFFYR 894

Query: 693 ITKSIQLAIDETTRRR 708
             K     + E   +R
Sbjct: 895 KDK----VLSEVAEKR 906


>gi|289428412|ref|ZP_06430098.1| transcription-repair coupling factor [Propionibacterium acnes J165]
 gi|289158384|gb|EFD06601.1| transcription-repair coupling factor [Propionibacterium acnes J165]
          Length = 1198

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 154/471 (32%), Gaps = 72/471 (15%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++      A +  +  K +   +AV Y+ S+ +    E   PRTDT   +   +   
Sbjct: 60  PVLLVTSTFREAEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLR-- 116

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
               R   T         +VV+ V  +             V+L +G+  +  EL + LV 
Sbjct: 117 ----RLCGTEG---EVPQVVVAPVRSLLQPQVAGLGRVAPVRLAVGEEHDLTELATELVN 169

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R D+   RG F V G  +++FP  LE    R+  FG++IEE++ F     +     
Sbjct: 170 AAYSRVDMVERRGEFAVRGGIVDVFPPVLE-HPVRIDFFGDEIEEMTSFAVADQRSTDET 228

Query: 375 ETIKIY-ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
               I       +      + A        K  L +  +   +LE              +
Sbjct: 229 HQELICAPCRELILTDEVRSRA--------KALLTDHPELADMLER-------------I 267

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
               + + +E     L           L + +PE +++ + +  +   + + + R     
Sbjct: 268 GNGQAVEGMEALMPALVDEMEL-----LVDVLPEHAMVVLSDPEMVRSRAADLVRTSEEF 322

Query: 494 KA--------------TLAEYGFRLPSCMDNRPLRFEE---WNCLRPTTIVVSATPGSWE 536
                            LA  G+R  S    R    E    W  +   ++  SAT     
Sbjct: 323 LGAGWAAAAGGGQAPIDLAASGYR--SLAQVRSHCLERGMAWWSMSSFSLDSSAT---DV 377

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           L         Q + P       V +      VE    ++      G  +LL    + MA+
Sbjct: 378 LVDDDITSAPQTVNPQ-----LVAVEPWHGDVEAAVKDLTARLDDGWTVLLCAEGEGMAK 432

Query: 597 DLTEYLYERNIRVRYMHS-------EVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++E L E N+  R +             + R+            +LV   
Sbjct: 433 RMSELLGEHNVAARLVDDVDPDATEPCVQVIRLHQRHGFAAESVKLLVAST 483



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 25/205 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--------RTQVEDVYDEIN 576
            + +SATP    LE     I E     T    PP E              QV      I 
Sbjct: 791 VLAMSATPIPRTLEMAVTGIREMSTIAT----PPEERHPVLTFAGPYDEGQV---VAAIR 843

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
               +  ++       +  E     L E     R +  H ++   +  +I+ D    + D
Sbjct: 844 RELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQLEQIMVDFWERRAD 903

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV   ++  G+DI     + I  AD  G  +    L Q  GR  R+       +     
Sbjct: 904 VLVCTTIVESGIDISTANTLLIDRADLMGLSQ----LHQLRGRVGRSRERGYAYFLYPAD 959

Query: 695 KSIQLAIDETTRRREKQLEHNKKHN 719
           K     + +T   R   +  +    
Sbjct: 960 KP----LSQTAHDRLATMAAHTDLG 980


>gi|289424265|ref|ZP_06426048.1| transcription-repair coupling factor [Propionibacterium acnes
           SK187]
 gi|289154962|gb|EFD03644.1| transcription-repair coupling factor [Propionibacterium acnes
           SK187]
          Length = 1198

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 154/471 (32%), Gaps = 72/471 (15%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++      A +  +  K +   +AV Y+ S+ +    E   PRTDT   +   +   
Sbjct: 60  PVLLVTSTFREAEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLR-- 116

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
               R   T         +VV+ V  +             V+L +G+  +  EL + LV 
Sbjct: 117 ----RLCGTEG---EVPQVVVAPVRSLLQPQVAGLGRVAPVRLAVGEEHDLTELATELVN 169

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R D+   RG F V G  +++FP  LE    R+  FG++IEE++ F     +     
Sbjct: 170 AAYSRVDMVERRGEFAVRGGIVDVFPPVLE-HPVRIDFFGDEIEEMTSFAVADQRSTDET 228

Query: 375 ETIKIY-ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
               I       +      + A        K  L +  +   +LE              +
Sbjct: 229 HQELICAPCRELILTDEVRSRA--------KALLTDHPELADMLER-------------I 267

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
               + + +E     L           L + +PE +++ + +  +   + + + R     
Sbjct: 268 GNGQAVEGMEALMPALVDEMEL-----LVDVLPEHAMVVLSDPEMVRSRAADLVRTSEEF 322

Query: 494 KA--------------TLAEYGFRLPSCMDNRPLRFEE---WNCLRPTTIVVSATPGSWE 536
                            LA  G+R  S    R    E    W  +   ++  SAT     
Sbjct: 323 LGAGWAAAAGGGQAPIDLAASGYR--SLAQVRSHCLERGMAWWSMSSFSLDSSAT---DV 377

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           L         Q + P       V +      VE    ++      G  +LL    + MA+
Sbjct: 378 LVDDDITSAPQTVNPQ-----LVAVEPWHGDVEAAVKDLTARLDDGWTVLLCAEGEGMAK 432

Query: 597 DLTEYLYERNIRVRYMHS-------EVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++E L E N+  R +             + R+            +LV   
Sbjct: 433 RMSELLGEHNVAARLVDDVDPDATEPCVQVIRLHQRHGFAAESVKLLVAST 483



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 25/205 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--------RTQVEDVYDEIN 576
            + +SATP    LE     I E     T    PP E              QV      I 
Sbjct: 791 VLAMSATPIPRTLEMAVTGIREMSTIAT----PPEERHPVLTFAGPYDEGQV---VAAIR 843

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
               +  ++       +  E     L E     R +  H ++   +  +I+ D    + D
Sbjct: 844 RELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQLEQIMVDFWERRAD 903

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV   ++  G+DI     + I  AD  G  +    L Q  GR  R+       +     
Sbjct: 904 VLVCTTIVESGIDISTANTLLIDRADLMGLSQ----LHQLRGRVGRSRERGYAYFLYPAD 959

Query: 695 KSIQLAIDETTRRREKQLEHNKKHN 719
           K     + +T   R   +  +    
Sbjct: 960 KP----LSQTAHDRLATMAAHTDLG 980


>gi|213420793|ref|ZP_03353859.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 445

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 121/309 (39%), Gaps = 38/309 (12%)

Query: 165 HSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            + ++ QL  G +TG+     +A++ E    P +++AP+   A +L+ E + F   + + 
Sbjct: 12  KAGDQRQL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT--DQMV 67

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
             ++ ++    +++ P  +    + S++ +     R             ++V   + +  
Sbjct: 68  MNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQR 116

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +          + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   
Sbjct: 117 VCQHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + 
Sbjct: 177 E-QPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQW 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           +             E +R  + I    + +        IE +          EP P LF 
Sbjct: 232 RDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFS 274

Query: 464 YIPEDSLLF 472
           Y P ++L+ 
Sbjct: 275 YFPANTLVV 283


>gi|323496023|ref|ZP_08101086.1| transcription-repair coupling factor [Vibrio sinaloensis DSM 21326]
 gi|323318914|gb|EGA71862.1| transcription-repair coupling factor [Vibrio sinaloensis DSM 21326]
          Length = 1154

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 66/316 (20%), Positives = 114/316 (36%), Gaps = 41/316 (12%)

Query: 159 QLLKGIHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            L     + +K  +  G + G+     +A++        ++  P+   A +L  E    F
Sbjct: 8   NLANATGAGDKKHV--GNLQGASLAIAIAELANQHSSHTLLAVPDPQTALKLLQEI-EQF 64

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
               V  F             P  +T      S +++I   R +    L  +   I +  
Sbjct: 65  TEQDVSLF-------------PDWETLPYDNFSPHQEIISDRIAKLYQLPTQTSGITIVP 111

Query: 278 VSCIYGIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           VS +    S   Y  Q  + +K GD     +L   L K  Y+  D     G +   G  +
Sbjct: 112 VSTLLQRQSPRDYLMQHTLMVKAGDLYSLDKLRLQLEKSGYRHVDQVFGPGEYASRGSIL 171

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++FP    D  +R+  F ++I+ I  F P   + I +V  I++     +    PT  TA+
Sbjct: 172 DLFPMGSSD-PFRIDFFDDEIDTIRTFDPENQRSIDDVNEIRLLPAHEF----PTTETAI 226

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           +  +   + R           EA+R  + +      +        IE +          E
Sbjct: 227 EDFRIRWRQR----------FEARREPESVYM---QVSKGTWPAGIEYWQPLFF-----E 268

Query: 457 PPPTLFEYIPEDSLLF 472
              TLF+YI EDS L 
Sbjct: 269 QTETLFDYIAEDSQLV 284



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 14/186 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q +D  V + +     +G
Sbjct: 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSDDAVVREAVLREIMRG 812

Query: 583 LRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++          E    DL + + E  I V   H +++  E   I+ D    +F++LV 
Sbjct: 813 GQVYFLHNQVDTIEKVAADLEKLIPEARITVA--HGQMRERELERIMNDFYHQRFNLLVC 870

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K++ 
Sbjct: 871 TTIIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAMT 926

Query: 699 L-AIDE 703
             AI  
Sbjct: 927 KDAIKR 932


>gi|298369030|ref|ZP_06980348.1| transcription-repair coupling factor [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298283033|gb|EFI24520.1| transcription-repair coupling factor [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 513

 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 100/282 (35%), Gaps = 36/282 (12%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           + +        +E Y              TLF+YI +D+L  
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGDDALFV 278


>gi|200390896|ref|ZP_03217507.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199603341|gb|EDZ01887.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 1148

 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 121/309 (39%), Gaps = 38/309 (12%)

Query: 165 HSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            + ++ QL  G +TG+     +A++ E    P +++AP+   A +L+ E + F   + + 
Sbjct: 12  KAGDQRQL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT--DQMV 67

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
             ++ ++    +++ P  +    + S++ +     R             ++V   + +  
Sbjct: 68  MNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQR 116

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +          + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   
Sbjct: 117 VCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + 
Sbjct: 177 E-QPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQW 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           +             E +R  + I    + +        IE +          EP P LF 
Sbjct: 232 RDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFS 274

Query: 464 YIPEDSLLF 472
           Y P ++++ 
Sbjct: 275 YFPANTMVV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|329122093|ref|ZP_08250701.1| transcription-repair-coupling factor [Dialister micraerophilus DSM
           19965]
 gi|327466900|gb|EGF12416.1| transcription-repair-coupling factor [Dialister micraerophilus DSM
           19965]
          Length = 1132

 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 17/223 (7%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K+ ++ G  G+ K +  +  I       +++ P +        + K F P   V +F   
Sbjct: 64  KINMISGAFGAQKAYLTS--ILKNNNSTLIIVPEQKDIFLWNQDIKFFMPEKQVLFF--- 118

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS-VSCIYGIGSV 287
                     P  D    + +  + +  R R  +  +L +  D +V++S V  +  I S 
Sbjct: 119 ----------PIMDKVNFEVTYSSTERLRDRVQSLAALYDNKDVVVIASIVEVMQKIPSK 168

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
            +  Q    + + D + +  +L+ LV   Y+R D     G F + GD ++IF S  E+  
Sbjct: 169 INVIQKTWTISLQDEIVRGRILNKLVDLGYERVDQVERVGHFSIRGDILDIF-SINEENP 227

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
            R+  FG+ ++ I  F   T + +  +    I+  +  +    
Sbjct: 228 IRIEFFGDVVDNIRYFNKDTQRSVSGLNKATIFPVTIGMEIDD 270



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 28/196 (14%)

Query: 525 TIVVSATPGSWELEQCQG------IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
            + +SATP    L            I +       +    +E        ED+  E  L 
Sbjct: 733 ILTLSATPIPRTLHMSLSGVRDMAAITQAPQNRHAVQTYVIEYN------EDIVKEAVLR 786

Query: 579 AQQGLRILLTVLTK-----RMAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGK 632
            ++    +  V  +      M + L +    +  I V Y    +K  E  +++ D    K
Sbjct: 787 EKERNGQVYFVYNRIESIDMMKDRLEKIFKGKVRIGVAY--GRMKGSELEKVMFDFYQDK 844

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           +DVL+   L+  GLD P    + I DAD  G  +    L Q  GR  R+       +   
Sbjct: 845 YDVLLCTTLIENGLDQPNANTIIIYDADFMGLSQ----LYQMKGRVGRSDKIAKAYFFYR 900

Query: 693 ITKSIQLAIDETTRRR 708
             K     + E   +R
Sbjct: 901 KDK----VLSEVAEKR 912


>gi|290968874|ref|ZP_06560411.1| transcription-repair coupling factor [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781170|gb|EFD93761.1| transcription-repair coupling factor [Megasphaera genomosp. type_1
           str. 28L]
          Length = 1095

 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 15/212 (7%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           + GV GS K+F  AK I  MQ P +++A  +   AQ  ++ +   P   +  F       
Sbjct: 29  IYGVGGSAKSFITAKGIRNMQHPVLIIAVGREQVAQWMADLQFLLPEMPLYTFPFVTS-- 86

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG-SVESYS 291
             E +     T ++    + EQ+  + H     L ER  CIV+++         S E+  
Sbjct: 87  --EVFT----TAVKSLERVAEQMKVLAH-----LRERKPCIVIAAAEEAAQYTISPENLD 135

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              V L   +S E++ L+  L++  Y+R D+   RG F V GD I+I+  +  D   R+ 
Sbjct: 136 AAAVPLCCHESYERQVLVEQLIQSGYERVDLVERRGHFSVRGDIIDIYAVNHRD-PLRLE 194

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
            FG+ ++ +  F        + VE ++I   +
Sbjct: 195 FFGDTLDSMRFFEVQRQISCQAVEQVRILPFT 226



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 83/212 (39%), Gaps = 18/212 (8%)

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ-IIRPTGLVDPPVEIRSARTQVEDVY 572
           +++ W       + +SATP    L      + E  +I        PV+          V 
Sbjct: 689 KWKAWAETID-VLSLSATPIPRTLHMSLVNLREMCVIETPPTDRFPVQTYVTEYDARIVR 747

Query: 573 DEINLAAQQGLRILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D +    ++G ++   V  +     RM E+L   L E  IR+   H ++   +  E + D
Sbjct: 748 DAVMREKRRGGQVF-FVYNRVDTMARMQEELAALLPELTIRMA--HGQMSGGKLEEAMFD 804

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              GK+D+L+  +L+  GLD+     + I DAD  G  +    L Q  GR  R+ +    
Sbjct: 805 FYEGKYDLLLCSSLVENGLDVANANTILIYDADHFGLSQ----LYQMRGRVGRSHHLAYA 860

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
            +        Q  + E   +R + ++   +  
Sbjct: 861 YFFYRP----QKVLSEVAEKRLEAIKEFTELG 888


>gi|262372249|ref|ZP_06065528.1| transcription-repair coupling factor [Acinetobacter junii SH205]
 gi|262312274|gb|EEY93359.1| transcription-repair coupling factor [Acinetobacter junii SH205]
          Length = 1153

 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 69/498 (13%), Positives = 162/498 (32%), Gaps = 67/498 (13%)

Query: 155 AAIAQL-LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
             I+QL L+   + EK   +  + GS       ++        +++A N    AQL SE 
Sbjct: 4   QEISQLNLQQFKAGEKR-WIGSLLGSSAALLFKEIATQNSNLYVIVARNNQHLAQLESEL 62

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           + +     +      ++    +   P  D   E+ + ++              + +   +
Sbjct: 63  EFYGIKPTI---FPDWEILPYDRLSPHQDIVSERLAILSN-------------MPQKGIL 106

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           ++S+ +    +            +K+G  ++ +     LV+  Y+  D     G F V G
Sbjct: 107 LISASTLAQRVAPYSWVVGEHFDIKVGQKLDLEAQKKQLVQAGYRLVDTVYDHGEFAVRG 166

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++I+ +  +D   R+ +F ++IE +  F P T +   +++   +     +        
Sbjct: 167 SIMDIY-ASGQDQPIRIDLFDDEIESLKFFDPETQRTTESLKNFTVLPAKEFPLKEGRST 225

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                     + R  E        +            + +    +   +E Y      + 
Sbjct: 226 ---------FRDRYAESFPTANPKK--------NPIYQDVLEGIATPGLEFYFPLFFDKK 268

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             E    L  Y+P++    V  ++    ++   ++    R              +D   L
Sbjct: 269 LMEAQSMLMTYLPKN--CVVITNNEVEDELISFWKEVVRRYEDRRHN-------IDQPIL 319

Query: 514 RFEEWNCLRPTTI-----VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
             E+   +    +            +   ++  G++     +P  L   P + +  +  V
Sbjct: 320 PPEDLFLMPNHVLQALNQFPRILASADTFDEKAGVLNLSAEQPPKLAVDPKKEQPFQA-V 378

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           ++  D+I         +LL   +    E L +           M S +  ++ ++     
Sbjct: 379 KNYIDQIEFP------VLLVAESAGRRETLKD----------AMRSVLGEIQTVDSFAQF 422

Query: 629 RLGKFDVLVGINLLREGL 646
           +  K  V +    L  GL
Sbjct: 423 QKDKLKVAITSAPLDRGL 440



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 71/193 (36%), Gaps = 11/193 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-VYDEINLAAQQGL 583
            + ++ATP    L      + +  I  T            +   +D V + I     +G 
Sbjct: 756 MLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEHTDDSVKEAILRELLRGG 815

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   E +       R    H +++  E  ++++     +++VLV   +
Sbjct: 816 QVYFLHNEVDTIERAAESIRTLVPEARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTI 875

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +  S++   
Sbjct: 876 IETGIDVPNANTIIIERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVPSLKHLK 928

Query: 702 DETTRRR-EKQLE 713
            +  +R    Q  
Sbjct: 929 GDAEKRLDAIQRA 941


>gi|314926804|gb|EFS90635.1| transcription-repair coupling factor [Propionibacterium acnes
           HL036PA3]
          Length = 1208

 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 85/469 (18%), Positives = 154/469 (32%), Gaps = 68/469 (14%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +++      A +  +  K +   +AV Y+ S+ +    E   PRTDT   +   +   
Sbjct: 70  PVLLVTSTFREAEESVATLKTWLGADAVCYYPSW-ETLPHERLSPRTDTVGRRMEVLR-- 126

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
               R   T         +VV+ V  +             V+L +G+  +  EL + LV 
Sbjct: 127 ----RLCGTEG---EVPQVVVAPVRSLLQPQVAGLGRVAPVRLAVGEEHDLTELATELVN 179

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R D+   RG F V G  +++FP  LE    R+  FG++IEE++ F     +     
Sbjct: 180 AAYSRVDMVERRGEFAVRGGIVDVFPPVLE-HPVRIDFFGDEIEEMTSFAVADQRSTDET 238

Query: 375 ETIKIY-ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
               I       +      + A        K  L +  +   +LE              +
Sbjct: 239 HQELICAPCRELILTDEVRSRA--------KALLTDHPELADMLER-------------I 277

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
               + + +E     L           L + +PE +++ + +  +   + + + R     
Sbjct: 278 GNGQAVEGMEALMPALVDEMEL-----LVDVLPEHAMVVLSDPEMVRSRAADLVRTSEEF 332

Query: 494 KA--------------TLAEYGFR-LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
                            LA  G+R L     +   R   W  +   ++  SAT     L 
Sbjct: 333 LGAGWAAAAGGGQAPIDLAASGYRSLAQVRSHCLERGMAWWSMSSFSLDSSAT---DVLV 389

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
                   Q + P       V +      VE    ++      G  +LL    + MA+ +
Sbjct: 390 DDDITSAPQTVNPQ-----LVAVEPWHGDVEAAVRDLTARLDDGWTVLLCAEGEGMAKRM 444

Query: 599 TEYLYERNIRVRYMHS-------EVKTLERIEIIRDLRLGKFDVLVGIN 640
           +E L E N+  R +             + R+            +LV   
Sbjct: 445 SELLGEHNVAARLVDDVDPDATEPCVQVIRLHQRHGFAAESVKLLVAST 493



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 25/205 (12%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA--------RTQVEDVYDEIN 576
            + +SATP    LE     I E     T    PP E              QV      I 
Sbjct: 801 VLAMSATPIPRTLEMAVTGIREMSTIAT----PPEERHPVLTFAGPYDEGQV---VAAIR 853

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
               +  ++       +  E     L E     R +  H ++   +  +I+ D    + D
Sbjct: 854 RELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQLEQIMVDFWERRAD 913

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV   ++  G+DI     + I  AD  G  +    L Q  GR  R+       +     
Sbjct: 914 VLVCTTIVESGIDISTANTLLIDRADLMGLSQ----LHQLRGRVGRSRERGYAYFLYPAD 969

Query: 695 KSIQLAIDETTRRREKQLEHNKKHN 719
           K     + +T   R   +  +    
Sbjct: 970 KP----LSQTAHDRLATMAAHTDLG 990


>gi|261377774|ref|ZP_05982347.1| transcription-repair coupling factor [Neisseria cinerea ATCC 14685]
 gi|269146063|gb|EEZ72481.1| transcription-repair coupling factor [Neisseria cinerea ATCC 14685]
          Length = 1134

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 80/501 (15%), Positives = 167/501 (33%), Gaps = 69/501 (13%)

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           P+K L   L  + +          F   +D      ++P  +T   +  S ++ +   R 
Sbjct: 31  PHKQLKVVLTQDAEQALRLQTAWLFFRPHDT---AVFLPDWETLPYERFSPHQDLVSERL 87

Query: 261 SATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA   +     D + V   + +  +  V   +     LK G +++   L S LV   Y  
Sbjct: 88  SALWQIKSGAADVLFVPVATAMQKLPPVLFLTGRTFWLKTGQTLDIGRLKSDLVDAGYNH 147

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
               +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  I++
Sbjct: 148 VSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVSEIRL 206

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
                + T            +EE+                           + +      
Sbjct: 207 LPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVYKAVSNGHFG 249

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +E Y              TLF+YI ED+L     S   +   +  +  D   +  +A+
Sbjct: 250 AGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSDVKSRYAMAQ 302

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
                P               L P  + +SA   +  L+    ++ +       L +  V
Sbjct: 303 GDESYPP--------------LLPQYLYLSADVFAGRLKNYAQVLPDIFGDEHTLPNLAV 348

Query: 560 EIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
                  Q ++    + +       RILL   +    E +  +L +  ++ + + S+ + 
Sbjct: 349 -----NRQADEPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKAKSV-SDWQG 402

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
                           +++ +  L  G  + +  +  I ++D          L Q + R+
Sbjct: 403 FLSAHEP---------LMITVAPLAYGFKLEDQNIAVITESD----------LYQYVARS 443

Query: 679 ARNVNSKVILYADTITKSIQL 699
            ++   K    +D + + +  
Sbjct: 444 RKHHRKKHAAVSDGLLRDLAE 464



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525 TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
            + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 739 ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 795

Query: 581 QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 796 RGGQVFFLHNEVDTIENMRERLKTLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 853

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 854 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 902

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                  + P+ + +   + +D I   D        A  ++ I 
Sbjct: 903 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 939

Query: 750 AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                L + +    ++   +L  +M   A  +L
Sbjct: 940 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 972


>gi|269926461|ref|YP_003323084.1| transcription-repair coupling factor [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790121|gb|ACZ42262.1| transcription-repair coupling factor [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 1150

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 86/533 (16%), Positives = 170/533 (31%), Gaps = 74/533 (13%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  L   +   EKV  L     S      A +   M    +++ P    A  +      +
Sbjct: 16  IQHLKAQLSRGEKVCYLPSAVPSAYPALWATLFAEMHTDTLLIVPRPEEAQNVADSLSTY 75

Query: 217 FPH-NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
                 V  + ++ D        P  D+   + S++ E+I R          +R   ++V
Sbjct: 76  LWDPKRVLLWPAHDDLPYERIASPTQDSPFRRLSAL-ERILR---------TDREPLLIV 125

Query: 276 SSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +SV  I     +   +      +K GD+V+   L + + +  Y         G F   G 
Sbjct: 126 ASVKSILEPTLARRYFEDHREFVKTGDAVDIIALANRVAELGYSPVASVEEVGQFSRRGG 185

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
             +I+     D+  R+ +FG+++E I  F P T +  R +E+  I   S Y  P     +
Sbjct: 186 IFDIWTP-SSDLPIRLELFGDEVESIRLFDPETQRSTREIESFSII--SPYEIPVAEYES 242

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A+         RL +++      E   +       LE L            + Y      
Sbjct: 243 AL--------ERLQQIDLSNLRHE---VTSSWKQSLEKLSAGDLPAIHSIIAPYFPSGL- 290

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
                 L +Y+ E +++F D         S +       +  + + G   PS + +    
Sbjct: 291 ----GNLLDYLSEGTIVFTDLPDRLALTASTLRSHIEGMRLEMEQSGDI-PSNLLSPVFE 345

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           +              A P    +   +G +  +      +    +          D+ D 
Sbjct: 346 WSYIEDRLK------ALPKIEPVNSAEGNL--KFYPAPQIRSSTI----------DIVDN 387

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +     +G  + +     R  E +     E N+ +  +  +VK  +              
Sbjct: 388 LRSWIDEGRTVFIVT---RHHERIRHVAKEHNLPLA-LDEDVKQGQMF------------ 431

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
             +    +++G    +  LV + D +  G+            R+ R    +V 
Sbjct: 432 --IVPGSIQDGWICDDINLVVLSDTELWGYREP------RRARSPRKAPQRVF 476



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 65/191 (34%), Gaps = 13/191 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP---VEIRSARTQVED 570
           E    +R     + ++ATP    L+     + +  +  T   D       I      +  
Sbjct: 741 ETLKQIRTQVDVLTLTATPIPRTLQMALSGVRDMSVIETAPEDRLPVYTYIVPKNDSI-- 798

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDL 628
           + D I    ++G ++       +    +   L E     R    H ++   +  +++ D 
Sbjct: 799 IRDSIIRELERGGQVFYVHNRVQDIYKVAHKLQEMVPEARITVAHGQMPEQQLEQVMLDF 858

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
               +DVLV   ++  GLDIP    + + DA   G  +    L Q  GR  R+ N     
Sbjct: 859 MHHHYDVLVCTTIIESGLDIPNANTLIVDDATHMGLAQ----LYQLRGRVGRSSNRAYAY 914

Query: 689 YADTITKSIQL 699
                   +  
Sbjct: 915 LMYRPDARMTE 925


>gi|149192401|ref|ZP_01870601.1| transcription-repair coupling factor [Vibrio shilonii AK1]
 gi|148833766|gb|EDL50803.1| transcription-repair coupling factor [Vibrio shilonii AK1]
          Length = 331

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 108/298 (36%), Gaps = 38/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G      +++         +++ P+  LA +L  E + FFP                 
Sbjct: 24  LIGGALALAISEHANTYNDHTLLVVPDPQLALKLQGELEQFFPGEI-------------- 69

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMI 294
           A  P  +T      S ++ I   R +   +L +++  I +  VS +    S   +  Q  
Sbjct: 70  ALFPDWETLPYDNFSPHQDIISDRIARLYALPQQSKGITIVPVSTLLQRQSPRDFLMQHT 129

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K GD     +L   L    Y+  D     G +   G  +++FP       +R+  F 
Sbjct: 130 LMVKTGDLFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSS-APYRIDFFD 188

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P   + I ++  I++     + T +  +           + R+   ++  
Sbjct: 189 DEIDTIRTFDPENQRSIEDISEIRLLPAHEFPTTKDAIE----------EFRVRWRQQFD 238

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
              E + +  ++T              IE +          E   TLF+YI +DS + 
Sbjct: 239 ARREPESVYMQVTK-------GTWPAGIEYWQPLFF-----EHTETLFDYISQDSQII 284


>gi|289704875|ref|ZP_06501292.1| transcription-repair coupling factor [Micrococcus luteus SK58]
 gi|289558371|gb|EFD51645.1| transcription-repair coupling factor [Micrococcus luteus SK58]
          Length = 1218

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 91/557 (16%), Positives = 181/557 (32%), Gaps = 65/557 (11%)

Query: 174 LGVTGSGKTFTMAKVIEAMQR------PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +G+    +   +  + EA+          +V+      A  L ++   + P  A   F S
Sbjct: 43  IGLPDGARAPLLTVLAEALAEGHGERAAVLVVTATTREAEDLVTDLAAWAPAGAAALFPS 102

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS---ATRSLLERNDCIVVSSVSCIYGI 284
           + +    E   PR+DT   + +     + R+ H    A   L      +       + G+
Sbjct: 103 W-ETLPHERLSPRSDTVGARLAV----LRRLAHPEEHAEGPLRVVVAPVRAVLQPLVAGL 157

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
           G +         L+ G+  +   ++++L    Y R D+   RG F V G  I++FP   E
Sbjct: 158 GELSPV-----TLRTGEERDFDGVVAALADAAYSRVDMVSRRGEFAVRGGLIDVFPP-TE 211

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           D   R+  FG+++E++  F     + + +         S    P         +++   K
Sbjct: 212 DYPVRIEFFGDEVEQMRWFSVADQRSLEDTTEDGSGHPSELYAPPCRELLITDHVRRRAK 271

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
             +  +     +L             + +    + + +E+ +  L      E   +L   
Sbjct: 272 ELIPAMPAAADML-------------DRIAEGVAVEGMESLAPLLA-----EAMTSLPRM 313

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +P  SL  + E      ++ G             +  +   +     P+     +     
Sbjct: 314 LPAGSLTVLVEP----ERLRGRADDLLATNEEFLQAAWAGAAQGAVAPVDVAGADQSAAG 369

Query: 525 TIVVSATPGSWELEQCQGI-IVEQIIRPTGLVDPPVEIRSARTQ-------VEDVYDEIN 576
             +  A   +  LEQ QG   V  ++    L+     +R+           +E +     
Sbjct: 370 GFLTVAELRAAALEQDQGFWSVTALVSDDELLPDAATLRATLGVAQTFSGDIEAMVAHTR 429

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +   +G   ++       A  L E   E  +        +          DL  G+  V 
Sbjct: 430 VRLAEGWHAVVLTDGPGSARRLAELTTEAGLTASVADGPLPA--------DLAPGR--VS 479

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI--QTIGRAARNVNSKVILYADTIT 694
           +    +  G  IP+  +  I + D  G  R+  +      + R  RN    + L      
Sbjct: 480 IATAPVGSGFTIPDAQIALITEHDLFGRHRTAGTRAPGARLARKRRNAVDPLTLQPGDHV 539

Query: 695 KSIQLAID---ETTRRR 708
              Q  I    E  RR+
Sbjct: 540 VHSQHGIARFVELQRRK 556



 Score = 43.5 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 13/150 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP---PVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    LE     I E     T   +       +     Q   V   I     +
Sbjct: 821 VLAMSATPIPRTLEMSLTGIRETSTLATAPEERHPVLTSVGPYSDQ--QVTAAIRRELMR 878

Query: 582 GLRIL-----LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             ++      +T + K +A+ + E + E  I V   H ++      +I+ D    KFDVL
Sbjct: 879 EGQVFYVHNRVTTIDK-VAKRIAELVPEARIAVA--HGKMSEARLEQIMVDFWERKFDVL 935

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLR 666
           V   ++  GLDI     + + DA + G  +
Sbjct: 936 VSTTIIETGLDIANANTLIVEDAHRYGLSQ 965


>gi|145630885|ref|ZP_01786662.1| transcription-repair coupling factor [Haemophilus influenzae R3021]
 gi|144983545|gb|EDJ91013.1| transcription-repair coupling factor [Haemophilus influenzae R3021]
          Length = 564

 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 121/335 (36%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V        ++++ E  Q   +V+ P+   A +L          N  
Sbjct: 10  IPTQPNDHKILGNVLPGADALAISEITEQNQNLTVVVTPDTRSAVRLSRVLSELSSQNVC 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
            +              P  +T      S +++I   R SA   L      I +  +S + 
Sbjct: 70  LF--------------PDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLM 115

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K GD +   ++   L    Y+  +  +  G + V G  +++FP 
Sbjct: 116 QRLCPPQYLQHNVLLIKKGDRLVIDKIRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               + +R+  F ++I+ I  F   T + +  + +I +     +    PT +  +++ + 
Sbjct: 176 GSA-MPFRLDFFDDEIDSIRTFDVDTQRTLDEINSINLLPAHEF----PTDDKGIEFFRT 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +              TL
Sbjct: 231 QFRETFSEIRRDPEHIYQQ------------ISKGTLISGIEYWQPLFFAEM-----ATL 273

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+Y+PE +L    E++ T  Q    Y+    R   
Sbjct: 274 FDYLPEQTLFVDMENNQT--QGERFYQDAKQRYEQ 306


>gi|240013954|ref|ZP_04720867.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae DGI18]
 gi|240121523|ref|ZP_04734485.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae PID24-1]
          Length = 1234

 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 73/421 (17%), Positives = 142/421 (33%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R   V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKAVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E   +R+ +F N+I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-TPYRIDLFDNEIDSIKTFDTDTQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWND 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q +D    + +       RILL   +    E +  +L +  ++ 
Sbjct: 340 AHSLPDLAV-----NRQSDDPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 837  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 893

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 894  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 951

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 952  LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1000

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1001 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1037

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1038 GAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDL 1070


>gi|68250212|ref|YP_249324.1| transcription-repair coupling factor [Haemophilus influenzae
           86-028NP]
 gi|68058411|gb|AAX88664.1| transcription-repair coupling factor [Haemophilus influenzae
           86-028NP]
          Length = 1146

 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 121/335 (36%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V        ++++ E  Q   +V+ P+   A +L          N  
Sbjct: 10  IPTQPNDHKILGNVLPGADALAISEIAEQNQNLTVVVTPDTRSAVRLSRVLSELSSQNVC 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
            +              P  +T      S +++I   R SA   L      I +  +S + 
Sbjct: 70  LF--------------PDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLM 115

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K GD +   ++   L    Y+  +  +  G + V G  +++FP 
Sbjct: 116 QRLCPPQYLQHNVLLIKKGDRLVIDKMCLQLEAAGYRAVEQVLEHGEYAVRGSLLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  + +I +     +    PT +  +++ + 
Sbjct: 176 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLDEINSINLLPAHEF----PTDDKGIEFFRA 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +              TL
Sbjct: 231 QFRETFGEIRRDPEHIYQQ------------ISKGTLISGIEYWQPLFFAEM-----ATL 273

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+Y+PE +L    E++ T  Q    Y+    R   
Sbjct: 274 FDYLPEQTLFVDMENNQT--QGERFYQDAKQRYEQ 306



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 68/188 (36%), Gaps = 14/188 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     GI    II   P   +     +R     V  V + I     +
Sbjct: 753 ILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTFVRQNGDLV--VREAILREILR 810

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+  E L       R +  H +++  E   ++ D    +++VLV  
Sbjct: 811 GGQVYYLHNDVASIENTAEKLTTLVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCS 870

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +  
Sbjct: 871 TIIETGIDVPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKMMTK 926

Query: 700 AIDETTRR 707
              +  RR
Sbjct: 927 ---DAERR 931


>gi|332971576|gb|EGK10526.1| transcription-repair coupling factor [Kingella kingae ATCC 23330]
          Length = 1126

 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 79/479 (16%), Positives = 166/479 (34%), Gaps = 71/479 (14%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            IV+  +   A +L+  ++ F PH+               +++P  +T   +  S ++ +
Sbjct: 36  VIVLTKDSESAQRLHEAWQFFRPHDN-------------GSFLPDWETLPYEHFSPHQDL 82

Query: 256 DRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
              R S    L  +    +   V+  +  +            LK+G +V    L  +LV 
Sbjct: 83  VSERLSVLWQLKNKQINALFLPVATAMQKVAPTSFILGRTFWLKVGQNVNIDTLRENLVD 142

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y      +  G F V G  +++FP   E   +R+ +F  +I+ I  F P T + I+++
Sbjct: 143 AGYSAVSNVVAAGEFAVRGGIVDLFPMGSE-FPYRIDLFDKEIDTIKTFDPETQRTIQSI 201

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           + I++     + T   T        +EE+             +  +            + 
Sbjct: 202 DEIRLLPAHEFPTDSDTQKIFRSRFREEID------GDFASAIVYK-----------SVG 244

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
                  +E Y          +    LF+YI +  ++  D+ H      +  + GD   +
Sbjct: 245 NGQFGAGVEYYLPLFFENGCVQ----LFDYIDDAIVVCTDDVHA----YANRFWGDVKSR 296

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             +A+     P      PL         P  + +S      +   C     +   +P+ +
Sbjct: 297 YQMAQGDSHYP------PLE--------PQHLFLS----PDQFAGCLKKFPQIWTQPSAV 338

Query: 555 VDPP-VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
            D P V +       E + D  N       +IL+   +    E ++ +  +  + +++  
Sbjct: 339 HDLPNVAVNRQSD--EPLRDLANFVNGFDGKILVCAESLGRRETMSAFFRQHGLELQH-- 394

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
             V+          L+LG       +  L +G  +PE  +  I + D   ++    +  
Sbjct: 395 --VENWREFISTSSLQLGA-----CVAPLSQGFRLPE-NMAVITENDLYQYVSKPRTRR 445



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 19/185 (10%)

Query: 528 VSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQQGL 583
           ++ATP    L                P+  +     ++  +   ++   + +    ++G 
Sbjct: 739 LTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSIQ---EAVLRELKRGG 795

Query: 584 RILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T   M + L   L E  I V   H +++  E  +++RD    KF+VL+  
Sbjct: 796 QVFFLHNEVDTIENMRDKLENLLPEARIGVA--HGQLRERELEQVMRDFLNQKFNVLLCS 853

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA--DTITKSI 697
            ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +         + ITK  
Sbjct: 854 TIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPEFITKDA 909

Query: 698 QLAID 702
           +  +D
Sbjct: 910 EKRLD 914


>gi|315606044|ref|ZP_07881075.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315312326|gb|EFU60412.1| transcription-repair coupling factor [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 1194

 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 82/582 (14%), Positives = 177/582 (30%), Gaps = 88/582 (15%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            AI      + +  +   ++   G  +   +A++    + P +V+      A  L +   
Sbjct: 14  PAIETAADSVEAG-RSGTIVAPAG-IRPPLLARLASGAKSPLVVLTATGRDAESLTNALA 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           ++ P  A+      ++    E   P+ DT   + +     + R+ H            ++
Sbjct: 72  SWMPGVAML---PAWETLPHERLSPQVDTMARRIAV----LRRLVHPVADDASAGPISVL 124

Query: 275 VSSVSC-----IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           V  +       I G+  +E        ++ GD V+  E+   L +  Y+R D+   RG  
Sbjct: 125 VVPIRAFLQPIIAGLADLEPVR-----VRAGDVVDLTEMTERLAELGYERVDMVEARGQI 179

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV-ETIKIYANSHYVTP 388
            V G  +++FP   E    RV ++G+++++I  F     + +    + +        +  
Sbjct: 180 SVRGGILDVFPP-QEPHPLRVELWGDEVDDIRAFSVSDQRTLGEAGDGLWAVPCRELL-- 236

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
                             L +  +      A RL         +     +   IE+ +  
Sbjct: 237 ------------------LTQAVRARAREAASRLPGAAEMLS-LAAEGIAAPGIESLAPI 277

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH---------------- 492
           L G        +L + +P    +   E      + + +                      
Sbjct: 278 LVGGME-----SLLDLLPPACPIVASEPERIRARAADLVATTEEFLAAAWSAAAAGADTP 332

Query: 493 ---RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII-VEQI 548
               KA+  + G    S           W         ++   G       +       +
Sbjct: 333 LEASKASFLDLGDLWGSGQH------PWWEITALPPADLAGALGQQTNAGAETDGPAPLV 386

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           + PT +     ++R  R        ++   A+ G RI++T         +   L + +  
Sbjct: 387 VSPTLVRVGARDVRPYRGDFARAGADLTNLARGGWRIVVTTEGPGPGRRIRSILTDASCP 446

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG-FLRS 667
              +  +V+           R     V +       G   P   +  + + D  G    S
Sbjct: 447 AA-LADDVEA----------RPDAGLVTITTAQAGVGFVAPHLKIAVLTEGDLTGRAGAS 495

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKS---IQLAIDETTR 706
              + +   R  + V+   +   D I      I   I+  +R
Sbjct: 496 TRDMRRMPSRRRKGVDPLTLHPGDYIVHDQHGIGRFIELVSR 537



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 69/203 (33%), Gaps = 21/203 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVEDVYDE-----INLA 578
            + +SATP    LE          IR   ++  P E R    T V    D      I   
Sbjct: 797 VLSMSATPIPRTLEMAISG-----IREMSILQTPPEERQPVLTFVGAYTDAQVSAAIRRE 851

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVL 636
             +  ++            +  ++ E     R    H ++   +   +I+D    +FDVL
Sbjct: 852 LLRDGQVFYVHNRVDSISSVAAHIGELVPEARVRTAHGKMNEHQLEAVIQDFWNHEFDVL 911

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  GLDI     + +  AD  G  +    L Q  GR  R        +     K 
Sbjct: 912 VCTTIVETGLDISNANTLIVDRADTFGLSQ----LHQLRGRVGRGRERAYAYFFYPGDK- 966

Query: 697 IQLAIDETTRRREKQLEHNKKHN 719
              A+ ET   R K +  N +  
Sbjct: 967 ---ALTETAHERLKTIAANTELG 986


>gi|160871679|ref|ZP_02061811.1| transcription-repair coupling factor [Rickettsiella grylli]
 gi|159120478|gb|EDP45816.1| transcription-repair coupling factor [Rickettsiella grylli]
          Length = 1149

 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 111/327 (33%), Gaps = 41/327 (12%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G+      F + +  E      +V+ P+  +  +L +  K F P   + +F       
Sbjct: 21  LSGLQDDSLAFAVHQFAERYDGVILVLTPDNPMTNRLAAALKFFSPDETILHF------- 73

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYS 291
                 P  +T      S +E I   R      L +     ++V   + +  I  +    
Sbjct: 74  ------PDWETLPYDHFSPHEDIISQRLLTLAKLQDVARAILLVPVTTLMQRIAPLNYIQ 127

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + L  G+    + +  +L    Y        RG F   G  ++IFP   E + +R+ 
Sbjct: 128 ATTLSLACGEKKSIEIIRKNLQLGGYHSVSQVGARGEFASRGSILDIFPMGSE-LPYRID 186

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
              ++I+ +  F P T + I+ +E I++     +        +A+ + +++ +       
Sbjct: 187 FVDDEIDSLRYFDPDTQRSIKKIEKIQLLPAREFPLSA----SAIHFFRQQWRE-----N 237

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP-EDSL 470
             G  L             E +        IE Y          +    L +Y+P +  +
Sbjct: 238 FVGNPLN--------CPLYEAVSEGRVLAGIEYYLPLFF-----QKTALLLDYLPNKAFI 284

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATL 497
           L V+E H         ++    R   L
Sbjct: 285 LSVNEVHDAAE---NFWKEINERYEQL 308



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 63/173 (36%), Gaps = 9/173 (5%)

Query: 516 EEWNCLRPTTIVVS--ATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR    ++S  ATP    L      + E  II         ++    +     + 
Sbjct: 747 ERLKALRAQVDILSLTATPIPRTLNMALSGLRELSIIATPPARRLSIKTFVQQRNTRLIR 806

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
           + I     +G ++          E +   L       R    H +++  +   ++ D   
Sbjct: 807 EAILRELFRGGQVYFLHNQVDSIEKVARELEALVPEARIQVAHGQLRESQLERVMADFYH 866

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +F+VL+   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +
Sbjct: 867 QRFNVLLCTTIIESGIDVPSANTIIIDRADKFGLAQ----LHQLRGRVGRSHH 915



 Score = 38.5 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           T+L ++  ++  +   E  + V  +        + +I+  L+ GK D+LVG + LL + L
Sbjct: 666 TLLAQQHYQNFCDRFAEWPVHVEMISRFRSIASQKKILERLQQGKIDILVGTHKLLSKEL 725

Query: 647 DIPECGLVAILDADKEG 663
             P  GL+ I +  + G
Sbjct: 726 KFPRLGLLIIDEEHRFG 742


>gi|86130975|ref|ZP_01049574.1| transcription-repair coupling factor [Dokdonia donghaensis MED134]
 gi|85818386|gb|EAQ39546.1| transcription-repair coupling factor [Dokdonia donghaensis MED134]
          Length = 1159

 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 118/281 (41%), Gaps = 20/281 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + +L + I   +++Q   G+TGS  +F ++++ E  +RP +++  +K  AA   ++ +  
Sbjct: 43  LQKLGEAIAHSQRIQA-KGLTGSSLSFAVSQLFEGRERPVLLILNDKEEAAYYLNDLEAL 101

Query: 217 FPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
                V ++  SY   YQ           IE+  + N  +     +   S  ++   IV 
Sbjct: 102 RKEENVLFYPGSYRRPYQ-----------IEETDNANILLRAEVLNRVNS-RKKPALIVT 149

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
              +    + + +   +  +++ + D +    +   L + ++KR D     G F V G  
Sbjct: 150 YPDALFEKVVTRKELDRQTLKVTVNDKLSLDFINEMLFEYRFKRVDFVTEPGEFSVRGGI 209

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +++F S   D  +R+  FG++++ I  F   +   +  V+ I I  N        T  + 
Sbjct: 210 VDVF-SFSHDRPYRIEFFGDEVDSIRTFDVESQLSLDQVKKISIMPNVENKALEETRASF 268

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           +KYI       ++ ++   R L   R +Q  +   E  E  
Sbjct: 269 LKYIS---TKTVVFIK--NRSLLYDRTDQNFSKAEEAFENL 304



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 12/190 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +   I        P+E    R   E + D ++   Q+G 
Sbjct: 733 TLTLTATPIPRTLQFSLMAARDLSTITTPPPNRYPIESNVVRFSEEVIRDAVSYEIQRGG 792

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   +     + +V   H +++       +     G+FDVLV   +
Sbjct: 793 QVFFIHNRIENIKEVAGLIQRLVPDAKVGVGHGQMEGKALEAKMLSFMNGEFDVLVSTTI 852

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+P    + I +A+  G     + L Q  GR  R+       +       +    
Sbjct: 853 IESGLDVPNANTIFINNANNFGL----SDLHQMRGRVGRSNKKAFCYFITPPYSVM---- 904

Query: 702 DETTRRREKQ 711
            E  R+R  Q
Sbjct: 905 TEDARKR-IQ 913


>gi|261346027|ref|ZP_05973671.1| transcription-repair coupling factor [Providencia rustigianii DSM
           4541]
 gi|282565913|gb|EFB71448.1| transcription-repair coupling factor [Providencia rustigianii DSM
           4541]
          Length = 1148

 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 122/332 (36%), Gaps = 38/332 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + SR      LG + G+      A++IE  Q P +++  +   A ++  E          
Sbjct: 9   LPSRAGDIRHLGCLVGAAGPLECAEMIERHQGPVVIVTRDMQNALRVRDELHQ------- 61

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCI 281
                 +  Y  EA     +T      S +++I   R S    L   +   +++   + +
Sbjct: 62  ------FTQYPIEALS-DWETLPYDNFSPHQEIISHRLSTLYRLPTMQKGALILPVNTLM 114

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +  +   + +  GD + +  L   L K  Y+  +  +  G + + G  +++FP 
Sbjct: 115 QKVCPPDFLTGHALVMAKGDKLSRDNLREELDKAGYRHVEQVLEHGEYAIRGALLDLFPM 174

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
              D+ +R+  F ++I+ +  F   T + +  V  I +     + T +     A++  + 
Sbjct: 175 -GSDLPFRIDFFDDEIDSLRTFDVDTQRTLEEVPDINLLPAHEFPTDKD----AIERFRS 229

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + + R           E +R  + I    + +        IE +          EP P+L
Sbjct: 230 QWRER----------FEVRRDPEHI---YQQVSKQTLPSGIEYWQPLF----FAEPLPSL 272

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
           F+Y+P ++L           +     +  +  
Sbjct: 273 FDYLPANTLFVSQNLQEPAERFQQDAKQRYES 304



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 9/177 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  I  T        +++   Q +D+   + I     +G
Sbjct: 750 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-VKTFVRQYDDLIVREAILRETLRG 808

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E     L       R++  H +++  E   ++ D    +F+VL+   
Sbjct: 809 GQVYYLYNDVENIEKAKARLEALVPEARFVVGHGQMRERELERVMTDFHHQRFNVLICTT 868

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 IIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAM 921


>gi|71899709|ref|ZP_00681861.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1]
 gi|71730504|gb|EAO32583.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1]
          Length = 1195

 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 36/325 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           V+ +   + +A   +A + P +++  +   A Q+  + +    H              P 
Sbjct: 25  VSPTALAWHIACAAQAHRGPLLLVTHDNHSAHQVEVDIQTLLAH----------CPGLPV 74

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMI 294
              P  +T    + S +  I   R +    L      IVV  V  +   +  +       
Sbjct: 75  IGFPDWETLPYDQFSPDPNIVSQRLATLHRLPSLARGIVVVPVQTLMQQLAPLSYIVGGS 134

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
              K+G  +        L +  Y+     +  G F V G  ++++P    DV  R+ +  
Sbjct: 135 FDFKVGQRLILDAEKQRLERAGYRNVPQVMDPGDFTVRGGLLDVYPMGT-DVPLRIELLD 193

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
            +I+ I  F P + + +  V+ I +            L   +      L+ R        
Sbjct: 194 EEIDSIRTFDPESQRSLNQVDVIHMLPGREVPLDPAVLERVLVR----LRERFD------ 243

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG--EPPPTLFEYIPEDSLLF 472
                  L+ R +   + L+   +   IE Y         G      TLF+Y+  D L+ 
Sbjct: 244 -------LDTRRSALYQDLKAGLAPSGIEYYLPLFFESGSGGKHATATLFDYLSADLLVL 296

Query: 473 VDE-----SHVTIPQISGMYRGDFH 492
                   +     Q    Y    H
Sbjct: 297 TAPGVSNAADAFWGQTMQRYEQRRH 321



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL + + E  I +   H ++   E   ++ D +   F+VL+   ++  G+DIP   
Sbjct: 874 RMQRDLAQLVPEARIGIA--HGQMPERELERVMLDFQKQHFNVLLSTTIIESGIDIPNAN 931

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +S+
Sbjct: 932 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVVPDRRSM 972


>gi|86135186|ref|ZP_01053768.1| transcription-repair coupling factor [Polaribacter sp. MED152]
 gi|85822049|gb|EAQ43196.1| transcription-repair coupling factor [Polaribacter sp. MED152]
          Length = 1110

 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 107/248 (43%), Gaps = 14/248 (5%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q A ++Q++  +   +    +  + GS  +F +++  + + +P +++  +K  AA   ++
Sbjct: 12  QSAKVSQVITALQQEKNQFQISNLAGSSLSFVISESFKKVVKPYLLVFNDKEEAAYYLND 71

Query: 213 FKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
            +       V ++  SY   YQ E      DT        +E ++R+      +  ++  
Sbjct: 72  LEQLLGDKNVLFYPGSYRRPYQIE------DTDNANVLLRSEVLNRI------NSRKKPA 119

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            IV    +    + + +   +  +++ +G+ +    +   L + ++KR D     G F V
Sbjct: 120 IIVTYPTALFEKVVTKKELEKNTLKITVGEELSLDFVNEVLFEYKFKRVDFVTEPGDFSV 179

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I++F S   D  +R+  FG+DI+ I  F   T      ++ + I  N    T +  
Sbjct: 180 RGGIIDVF-SFSNDEPYRIEFFGDDIDSIRTFDVETQLSKEKLKKVSIMPNVENKTLQEN 238

Query: 392 LNTAMKYI 399
             + +KYI
Sbjct: 239 RQSFLKYI 246



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 68/176 (38%), Gaps = 7/176 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +  +I+       P+E    R   E + D I+    +G 
Sbjct: 704 TLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRHPIESNVIRFSEETIRDAISYEISRGG 763

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   L       +    H +++  +  E++     G+FDVLV   +
Sbjct: 764 QVFFIHNRIDNIKEVAGLLQRLVPSAKIGIGHGQMEGKKLEELMFGFMNGEFDVLVSTTI 823

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  GLD+P    + I +A+  G     + L Q  GR  R+       +       +
Sbjct: 824 IESGLDVPNANTIFINNANNFGL----SDLHQMRGRVGRSNKKAFCYFITPPYHMM 875


>gi|90416638|ref|ZP_01224568.1| transcription-repair coupling protein Mfd [marine gamma
           proteobacterium HTCC2207]
 gi|90331391|gb|EAS46627.1| transcription-repair coupling protein Mfd [marine gamma
           proteobacterium HTCC2207]
          Length = 1173

 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 107/646 (16%), Positives = 209/646 (32%), Gaps = 93/646 (14%)

Query: 163 GIHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
           GI ++   +   G +  +G+   +A+  +     +I++      AA             A
Sbjct: 25  GISAKPGDKNHWGELQAAGRALAIAEAAQQFDGLSILITETAREAAAQ---------SRA 75

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
           + +F +  D+  P    P  +T      S ++ I   R     +L      +++  +  +
Sbjct: 76  LAFFSAEQDF--PILNFPDWETLPYDIFSPHQDIVSARLQTLSNLPNAQHALLIVPLPTL 133

Query: 282 Y-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
              +   +  +      ++G+ +++ EL   L +  Y R D     G +   G  I+I+P
Sbjct: 134 MHRLAPTDFIASRTFAYEVGELLDRDELQQQLSRAGYNRVDTVYEHGEYAFRGSLIDIYP 193

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
                  +R+ +  ++IE +  F   + +   NV  I++     +   +     A     
Sbjct: 194 M-GAVQPFRIDLLDDEIESLRLFDSESQRTSENVTEIELLPAREFPLDK----QACNQF- 247

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
             L       +K+       R           ++   + Q IE Y          +   T
Sbjct: 248 --LNNWHTHFDKDPAKCPVYR----------DIKDGIAPQGIEYYLSLFF-----DETAT 290

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           LF+Y+PE   LF   SHV I   +  +  D    A  AEYG      + +    F     
Sbjct: 291 LFDYLPEKVQLF---SHVGIEDAALAFWQD--SNARYAEYGVDPTRPILSPKELFLGVEE 345

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           +      +  T    +  +     +   +R      P V + S      +    +    +
Sbjct: 346 VFQQIKKLPRTEIDRQPAKAGAGSINFNLRAV----PDVAVNSKLG---NPLSTLQEFIE 398

Query: 581 Q-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +   R+L    +    E L  +L + NI    + +    +                 V  
Sbjct: 399 RFDGRVLFCAESAGRREVLAGFLKKINIVATEVENWQGFINSSGSNNRF-------SVTT 451

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             + +G+  P+ G+  I + +  G       ++Q   R+  + +       D I KS+  
Sbjct: 452 YPIDQGVYSPDQGICLITEGELFG-----QQVMQRRRRSKASESP------DHIFKSLA- 499

Query: 700 AIDETTRRREKQLEHNKKH---------NINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                    E Q      H          +    V + + E +  +   DA         
Sbjct: 500 ---------ELQHGAPVVHMDHGVGRFQGLVTLEVDKSVQEFLMLVYANDAKLYVPVSSL 550

Query: 751 QQLSL--SKKKGKAHLKSLRKQMHLAADNLNFEEAA-RIRDEIKRL 793
             +S      +  A L  L       A     E+AA +IRD    L
Sbjct: 551 HLISRFGGGDQSMAPLHKLGTDKWSKAK----EKAAKQIRDTAAEL 592



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L      +    II   P   +     IR    +V    + I     +
Sbjct: 775 ILTMTATPIPRTLNLSMHAVRDLSIIATPPARRLSVKTFIRQREDRV--TREAILREILR 832

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          +R A++L   + E  I V   H +++  +  +++ D    +F+VLV
Sbjct: 833 GGQVYFLHNDVKNIQRTADELALLVPEARINVA--HGQMRERQLEQVMSDFYHQRFNVLV 890

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +           K++
Sbjct: 891 CTTIIETGIDIPSANTILIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKTM 946


>gi|204930833|ref|ZP_03221706.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320292|gb|EDZ05496.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 1148

 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 121/309 (39%), Gaps = 38/309 (12%)

Query: 165 HSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            + ++ QL  G +TG+     +A++ E    P +++AP+   A +L+ E + F   + + 
Sbjct: 12  KAGDQRQL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT--DQMV 67

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
             ++ ++    +++ P  +    + S++ +     R             ++V   + +  
Sbjct: 68  MNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQR 116

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +          + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   
Sbjct: 117 VCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + 
Sbjct: 177 E-QPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQW 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           +             E +R  + I    + +        IE +          EP P LF 
Sbjct: 232 RDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFS 274

Query: 464 YIPEDSLLF 472
           Y P ++L+ 
Sbjct: 275 YFPANTLVV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|148825849|ref|YP_001290602.1| transcription-repair coupling factor [Haemophilus influenzae
           PittEE]
 gi|148716009|gb|ABQ98219.1| transcription-repair coupling factor [Haemophilus influenzae
           PittEE]
          Length = 1146

 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 121/335 (36%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V        ++++ E  Q   +V+ P+   A +L          N  
Sbjct: 10  IPTQPNDHKILGNVLPGADALAISEIAEQNQNLTVVVTPDTRSAVRLSRVLSELSSQNVC 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
            +              P  +T      S +++I   R SA   L      I +  +S + 
Sbjct: 70  LF--------------PDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLM 115

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K GD +   ++   L    Y+  +  +  G + V G  +++FP 
Sbjct: 116 QRLCPPQYLQHNVLLIKKGDRLVIDKMCLQLEAAGYRAVEQVLEHGEYAVRGSLLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  + +I +     +    PT +  +++ + 
Sbjct: 176 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLDEINSINLLPAHEF----PTDDKGIEFFRA 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +              TL
Sbjct: 231 QFRETFGEIRRDPEHIYQQ------------ISKGTLISGIEYWQPLFFAEM-----ATL 273

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+Y+PE +L    E++ T  Q    Y+    R   
Sbjct: 274 FDYLPEQTLFVDMENNQT--QGERFYQDAKQRYEQ 306



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 12/187 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +D+   + I     +G
Sbjct: 753 ILTLTATPIPRTLNMAMNGIRDLSIIST-PPARRLSIKTFVRQNDDLVVREAILREILRG 811

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++  E   ++ D    +++VLV   
Sbjct: 812 GQVYYLHNDVASIENTAEKLTTLVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCST 871

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +   
Sbjct: 872 IIETGIDVPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKMMTK- 926

Query: 701 IDETTRR 707
             +  RR
Sbjct: 927 --DAERR 931


>gi|225024865|ref|ZP_03714057.1| hypothetical protein EIKCOROL_01753 [Eikenella corrodens ATCC
           23834]
 gi|224942394|gb|EEG23603.1| hypothetical protein EIKCOROL_01753 [Eikenella corrodens ATCC
           23834]
          Length = 1271

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 55/312 (17%), Positives = 110/312 (35%), Gaps = 38/312 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           ++     + +A  +       +V+ P+   A +L + ++ F P +    F+  ++    E
Sbjct: 17  LSAGSLPYFLASALPEKPLK-LVLTPDAETALRLQTAWQFFRPQDN-ALFLPDWETLPYE 74

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMI 294
            + P  D   E            R S    L      ++ + VS  +  +          
Sbjct: 75  RFSPHQDLVSE------------RLSVLWQLKNGAADVLFAPVSTAMQRLAPPSFLMGRT 122

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             LK G +++  +L  +LV+  Y      +  G F V G  +++FP       +R+ +F 
Sbjct: 123 FWLKTGQTLDLDKLRENLVEAGYSAVSNVVAGGEFAVRGGIVDLFPIGSS-TPYRIDLFD 181

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P T + +  V  I++     + T            +EE++          
Sbjct: 182 DEIDSIKTFDPDTQRTLAPVSEIRLLPAHEFPTDADAQKIFRTRFREEIQ------SNPN 235

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL-LFV 473
                Q            +        +E Y         G    +LF+YI E++L + V
Sbjct: 236 EAAVYQ-----------AVSNGQFGAGVEYYLPLF--FEDGC--ASLFDYIAENALAVCV 280

Query: 474 DESHVTIPQISG 485
            + H    +  G
Sbjct: 281 GDVHAEAVRFEG 292



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 876  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 932

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 933  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 990

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 991  LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1039

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1040 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1076

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1077 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1109


>gi|301029579|ref|ZP_07192657.1| transcription-repair coupling factor [Escherichia coli MS 196-1]
 gi|299877574|gb|EFI85785.1| transcription-repair coupling factor [Escherichia coli MS 196-1]
          Length = 1148

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 117/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP   LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLLPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|331005187|ref|ZP_08328584.1| Transcription-repair coupling factor [gamma proteobacterium
           IMCC1989]
 gi|330421011|gb|EGG95280.1| Transcription-repair coupling factor [gamma proteobacterium
           IMCC1989]
          Length = 1163

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 112/348 (32%), Gaps = 40/348 (11%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           +   P   +  A        +S    Q   G+ G+     + +  +  ++  +V+ P+  
Sbjct: 8   SPLQPPISRDTA--------NSTNAKQQWAGLHGAASALAIIRTAKE-KQAVLVITPDTA 58

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
            A  L  E + F                 P  +    +T      S ++ I   R     
Sbjct: 59  TANHLLEELRFFND-------QQDLTSTLPILHFTDWETLPYDIFSPHDDIVSTRLETLH 111

Query: 265 SLLERNDCIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
           ++      IVV +++ +   +  ++   +    +K  D      +   L    Y   D  
Sbjct: 112 TISHLQKGIVVVAMNTLMCRLPPLDYLQKYSFIIKKNDDFNIDNMRRQLEGSGYHCVDTV 171

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G F V G  +++FP     + +R+ +F N+++ +  F P T + I+ V+ I +    
Sbjct: 172 YSHGEFAVRGSLVDLFPMGSS-LPYRIDLFDNEVDTLRTFDPETQRSIQQVDNIYLLPAK 230

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
            +          ++  + +   R               ++ R     + +    +   IE
Sbjct: 231 EFPLDDD----GIRTFRTQWHDRFT-------------VDHRQCSIYQDISDAIAPAGIE 273

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
            Y              +LF+Y+P ++ +F                 + 
Sbjct: 274 YYLPLFFKEC-----VSLFDYLPANTHIFSLTGVEAAGDHYWREVHNR 316



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L      I    II   P   +     +R+    +  + + +     +
Sbjct: 769 ILTLTATPIPRTLNMAMHSIRDLSIIATPPARRLSVKTFVRAVDDAL--IKEAVLREILR 826

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++       +  E    YL E     R    H +++  E   ++ +    +++VLV  
Sbjct: 827 GGQVYFLHNEVKTIEKTARYLSELIPEARVGTAHGQLREKELEHVMSEFYHQRYNVLVCS 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +           K +
Sbjct: 887 TIIETGIDIPNANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLMTPPPKVM 940



 Score = 38.2 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q G ++ + V T    ++  E+  +   +  + V  +       E 
Sbjct: 651 GKTEVAMRAAFIATQAGKQVAVLVPTTLLAQQHHENFVDRFVDWPVNVAVISRFQTAKET 710

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEG 663
             I   +  G+ D+L+G + +L  G    E GL+ I +  + G
Sbjct: 711 KAIEAKVSSGEIDILIGTHKILTTGFQFKELGLLIIDEEHRFG 753


>gi|268601549|ref|ZP_06135716.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID18]
 gi|268585680|gb|EEZ50356.1| transcription-repair coupling factor [Neisseria gonorrhoeae PID18]
          Length = 1241

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 142/421 (33%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R   V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 39  HKRLKAVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 85

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 86  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 145

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E   +R+ +F ++I+ I  F   T + 
Sbjct: 146 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDSIKTFDTDTQRT 204

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 205 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 247

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 248 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWND 300

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 301 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 346

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q ++    + +       RILL   +    E +  +L +  ++ 
Sbjct: 347 AHSLPDLAV-----NRQSDEPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKA 401

Query: 610 R 610
           +
Sbjct: 402 K 402



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 844  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 900

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 901  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 958

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 959  LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1007

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1008 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1044

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1045 GAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDL 1077


>gi|238062748|ref|ZP_04607457.1| transcription-repair coupling factor [Micromonospora sp. ATCC
           39149]
 gi|237884559|gb|EEP73387.1| transcription-repair coupling factor [Micromonospora sp. ATCC
           39149]
          Length = 1229

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 85/228 (37%), Gaps = 20/228 (8%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           RP + +      A  L S   +  P   V  F S+ +    E   PR+DT   + +    
Sbjct: 72  RPVLAVTATSREADDLASALGSLLPPEQVAVFPSW-ETLPHERLSPRSDTVGRRLAV--- 127

Query: 254 QIDRMRHS--ATRSLLERNDCIVVSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQK 306
            + R+ H   A          +VV+ V  +      G+G +E        L  GD  + +
Sbjct: 128 -LRRLAHPDAADARGRTGPLRVVVAPVRSLLQPQLKGLGDLEPVR-----LAAGDEADLE 181

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           ++   L    Y R D+   RG F V G  +++FP   ++   RV  +G+++EEI  F   
Sbjct: 182 QVARRLADMAYARVDLVTKRGEFAVRGGILDVFPP-TDEHPSRVEFWGDEVEEIRTFAVA 240

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE--ELKMRLIELEK 412
             + I     +        +        A     E  EL   L +L +
Sbjct: 241 DQRTIEAAPLLWAPPCRELLLTPAVRRRAAALATEHPELAEILDKLAE 288



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 51/149 (34%), Gaps = 11/149 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     T    PP E     T V       V   I+   
Sbjct: 822 VLSMSATPIPRTLEMAITGIREMSTIAT----PPEERHPVLTFVGAHDERQVAASIHREL 877

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     + E     R    H ++      +++      +FDVLV
Sbjct: 878 LRDGQVFYLHNRVETIEKTARKIRELVPEARVAVAHGQMGEEALEKVMVGFWEKEFDVLV 937

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLR 666
              ++  G+DIP    + +  AD  G  +
Sbjct: 938 CTTIVESGIDIPNANTLIVERADLLGLAQ 966


>gi|285018831|ref|YP_003376542.1| transcription-repair coupling factor protein [Xanthomonas
           albilineans GPE PC73]
 gi|283474049|emb|CBA16550.1| probable transcription-repair coupling factor protein [Xanthomonas
           albilineans]
          Length = 1166

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 57/329 (17%), Positives = 112/329 (34%), Gaps = 40/329 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
            + +   + +A    A + P +V+A +   A Q+  +                 D   P 
Sbjct: 25  ASSTALAWHIACAAAAHRGPLLVIARDNHSAHQIEGDLHTLLGG----------DTPLPV 74

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
              P  +T    + S +  I   R +A + L      IVV  V  +   +  +       
Sbjct: 75  VPFPDWETLPYDQFSPHPDIVSQRLAALQRLPTLQQGIVVVPVQTLMQRVAPLRYIVGGS 134

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             L++G  ++       L    Y+     +  G F V G  ++++P    D   R+ +  
Sbjct: 135 FDLRVGQRLDLDAEKRRLESASYRHVPQVMDPGDFAVRGGLLDVYPM-GADAPLRIELLD 193

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           +DI+ I  F P + + + +V+T++I           ++   +      L+ R        
Sbjct: 194 DDIDSIRAFDPESQRSLDHVDTVQILPGREVPMDDASVERVLTT----LRERFD------ 243

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL------TGRNPGEPPPTLFEYIPED 468
                  ++ R +   + L+   +   IE Y          TG +  +   TLF+Y+ E 
Sbjct: 244 -------VDTRRSALYQDLKARLAPSGIEYYLPLFFQESRGTGASARDTTATLFDYLGER 296

Query: 469 SLLFVDE-----SHVTIPQISGMYRGDFH 492
            L  +       +     Q    Y    H
Sbjct: 297 VLPLIAPGVGAAADAFWAQTQARYEQRRH 325



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 73/180 (40%), Gaps = 13/180 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L      + +  I  T  ++    +++  TQ ++  + +       +
Sbjct: 770 HLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLA-VQTFVTQWDNALLREAFQRELAR 828

Query: 582 GLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++           RM  +L+  + E  I +   H ++   E   ++ D +  +F+VL+
Sbjct: 829 GGQLYFLHNDVESIGRMQRELSVLVPEARIGIA--HGQMPERELETVMLDFQKQRFNVLL 886

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD+ G  +    L Q  GR  R+ +           +SI
Sbjct: 887 STTIIESGIDIPNANTIVINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLLVPDQRSI 942


>gi|168233095|ref|ZP_02658153.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194470858|ref|ZP_03076842.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194457222|gb|EDX46061.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205332729|gb|EDZ19493.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 1148

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 121/309 (39%), Gaps = 38/309 (12%)

Query: 165 HSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            + ++ QL  G +TG+     +A++ E    P +++AP+   A +L+ E + F   + + 
Sbjct: 12  KAGDQRQL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT--DQMV 67

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
             ++ ++    +++ P  +    + S++ +     R             ++V   + +  
Sbjct: 68  MNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQR 116

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +          + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   
Sbjct: 117 VCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + 
Sbjct: 177 E-QPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQW 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           +             E +R  + I    + +        IE +          EP P LF 
Sbjct: 232 RDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFS 274

Query: 464 YIPEDSLLF 472
           Y P ++L+ 
Sbjct: 275 YFPANTLVV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|260440312|ref|ZP_05794128.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae DGI2]
 gi|291043604|ref|ZP_06569320.1| transcription-repair coupling factor [Neisseria gonorrhoeae DGI2]
 gi|291012067|gb|EFE04056.1| transcription-repair coupling factor [Neisseria gonorrhoeae DGI2]
          Length = 1234

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 142/421 (33%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R   V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKAVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E   +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDSIKTFDTDTQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWND 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q ++    + +       RILL   +    E +  +L +  ++ 
Sbjct: 340 AHSLPDLAV-----NRQSDEPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 92/273 (33%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 837  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 893

Query: 581  QGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++          + M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 894  RGGQVFFLHNELDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 951

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 952  LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1000

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1001 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1037

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1038 GAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDL 1070


>gi|194098853|ref|YP_002001917.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae NCCP11945]
 gi|240115873|ref|ZP_04729935.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae PID18]
 gi|193934143|gb|ACF29967.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae NCCP11945]
          Length = 1234

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 142/421 (33%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R   V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKAVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E   +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDSIKTFDTDTQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWND 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q ++    + +       RILL   +    E +  +L +  ++ 
Sbjct: 340 AHSLPDLAV-----NRQSDEPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 837  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 893

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 894  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 951

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 952  LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1000

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1001 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1037

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1038 GAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDL 1070


>gi|168467175|ref|ZP_02701017.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195630325|gb|EDX48951.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 1148

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 121/309 (39%), Gaps = 38/309 (12%)

Query: 165 HSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            + ++ QL  G +TG+     +A++ E    P +++AP+   A +L+ E + F   + + 
Sbjct: 12  KAGDQRQL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT--DQMV 67

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
             ++ ++    +++ P  +    + S++ +     R             ++V   + +  
Sbjct: 68  MNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQR 116

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +          + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   
Sbjct: 117 VCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + 
Sbjct: 177 E-QPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQW 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           +             E +R  + I    + +        IE +          EP P LF 
Sbjct: 232 RDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFS 274

Query: 464 YIPEDSLLF 472
           Y P ++L+ 
Sbjct: 275 YFPANTLVV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|168239121|ref|ZP_02664179.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194738344|ref|YP_002114221.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194713846|gb|ACF93067.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288100|gb|EDY27487.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 1148

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 121/309 (39%), Gaps = 38/309 (12%)

Query: 165 HSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            + ++ QL  G +TG+     +A++ E    P +++AP+   A +L+ E + F   + + 
Sbjct: 12  KAGDQRQL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT--DQMV 67

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
             ++ ++    +++ P  +    + S++ +     R             ++V   + +  
Sbjct: 68  MNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQR 116

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +          + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   
Sbjct: 117 VCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + 
Sbjct: 177 E-QPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQW 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           +             E +R  + I    + +        IE +          EP P LF 
Sbjct: 232 RDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFS 274

Query: 464 YIPEDSLLF 472
           Y P ++L+ 
Sbjct: 275 YFPANTLVV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|284928643|ref|YP_003421165.1| transcription-repair coupling factor [cyanobacterium UCYN-A]
 gi|284809102|gb|ADB94807.1| transcription-repair coupling factor [cyanobacterium UCYN-A]
          Length = 1151

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 82/522 (15%), Positives = 168/522 (32%), Gaps = 90/522 (17%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  L + +  + +++ L G+    K    + + +   +  +V+      A +   + +  
Sbjct: 16  IKNLSQQLKVKNELR-LQGINRLSKGLISSVISQTNYQNLLVICATSEEAGRWTKQLEIM 74

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL------ERN 270
              +   YFV               DT   +E +I  +I   +     +L       + N
Sbjct: 75  GWKDINFYFVP--------------DTSPYEELNIENEIIWTQMQVLSNLFRAKQSKDTN 120

Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             IV +  S    + S   +    +  K+G +V  K+   +L +  YK+ ++    G + 
Sbjct: 121 FAIVTTERSLQPHLPSPSIFYDYCLNFKVGVTVYSKDFAQTLSELGYKKVNLVEKEGEWS 180

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
             GD ++IFP   E +  R+   G+++E+I EF   T + +  +E   +   +  +  + 
Sbjct: 181 RRGDILDIFPVSSE-IPIRLEWLGDELEKIREFDISTQRSLNEIEEALLTPINFNIIAKD 239

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                                          + Q+  +  E        ++++N S    
Sbjct: 240 -------------------------------IIQKNPFSSEQYVVEEKPKTLKNSSP--K 266

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR------GDFHRKATLAEYGFR- 503
            + P     +LF+Y+P D+L   DE                    +   K       F  
Sbjct: 267 DQLPLSKSSSLFDYLPSDTLCAFDEIDQCKSHNHKWLEYVEKSWHETQNKEPKVHRSFEE 326

Query: 504 -LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
              S  +   L   E +        V+ T     L +   +   Q  +   ++    EI 
Sbjct: 327 SFSSIEEMPKLYLSELSD-------VNETDSIDILSRSIPVNPHQFSKLAEILRGKREIF 379

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
               ++      I L + Q  R +               L E +   +++ +        
Sbjct: 380 ---NEINISKYSIWLISAQPSRTVTL-------------LQEHDYSAQFIPNIRDYPAIK 423

Query: 623 EIIRDLRLGKFDVLVGINLLR-EGLDIPECGLVAILDADKEG 663
           +       G    L    L+  EG  +P   +  I D +  G
Sbjct: 424 KSHAQ---GMAVALKHSGLVGLEGFILPIFRIAVITDKEFFG 462



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 64/171 (37%), Gaps = 12/171 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA----- 579
            + ++ATP    L      I E  +  T    PP   RS +T +      +  AA     
Sbjct: 758 VLTLTATPIPRTLHMSLSGIREMSLIST----PPPSRRSIKTHLSSYDPNLVKAAVRAEL 813

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      ++L   L       + +  H ++        +     G  D+LV
Sbjct: 814 DRGGQVFYVVPRIEHIDELVLQLKRMIPDAKILVAHGQMDVNNLELTMLSFNNGDADILV 873

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              ++  GLDIP+   + I DA K G L     L   +GR+    ++ +  
Sbjct: 874 CTTIIESGLDIPKVNTIIIEDAQKFG-LSQLYQLRGRVGRSGIQAHAWLFY 923


>gi|88802028|ref|ZP_01117556.1| transcription-repair coupling factor [Polaribacter irgensii 23-P]
 gi|88782686|gb|EAR13863.1| transcription-repair coupling factor [Polaribacter irgensii 23-P]
          Length = 1114

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 109/249 (43%), Gaps = 16/249 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q + I+Q+++     +    +  + GS  +F +++  +  +RP +++  +K  AA   ++
Sbjct: 12  QSSNISQIIQAFKQDKNHFQITNLVGSSLSFVISETFKTSERPYLLVLNDKEEAAYYLND 71

Query: 213 FKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
            +       V ++  SY   YQ           IE+  + N  +     +   S  ++  
Sbjct: 72  LEQLLGEKNVLFYPGSYRRPYQ-----------IEEVDNANVLLRSEVLNRINS--QKKS 118

Query: 272 CIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            I+V+    ++  + + +   +  +++ +G+++    +   L + ++KR D     G F 
Sbjct: 119 AIIVTYPDALFEKVVTKKELDKNTLKVTVGENLSLDFVNELLFEYKFKRVDFVTEPGDFS 178

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V G  +++F S   D  +R+  FG++IE I  F   T      ++ + I  N    T + 
Sbjct: 179 VRGGIVDVF-SFSNDEPYRIEFFGDEIESIRSFDVETQLSKEKLKKVSIIPNIENKTLQE 237

Query: 391 TLNTAMKYI 399
              + +KYI
Sbjct: 238 HRQSFLKYI 246



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 70/185 (37%), Gaps = 11/185 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +  II+       P++    R   E + D I+    +G 
Sbjct: 708 TLTLTATPIPRTLQFSLMAARDLSIIKTAPPNRHPIDTNVIRFSEETIRDAISYEISRGG 767

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          +++   L       +    H +++  +   ++      +FDVLV   +
Sbjct: 768 QIFFIHNRIENIKEVAGLLQRLVPSAKIGIGHGQMEGKKLEGLMLSFMNNEFDVLVSTTI 827

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA----DTITKSI 697
           +  GLD+P    + I +A+  G     + L Q  GR  R+       +       +T   
Sbjct: 828 IESGLDVPNANTIFINNANNFGL----SDLHQMRGRVGRSNKKAFCYFITPPYHVMTDDA 883

Query: 698 QLAID 702
           +  I+
Sbjct: 884 RKRIE 888


>gi|168822320|ref|ZP_02834320.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205341236|gb|EDZ28000.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320086344|emb|CBY96117.1| Transcription-repair-coupling factor TRCF; ATP-dependent helicase
           mfd [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 1148

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 121/309 (39%), Gaps = 38/309 (12%)

Query: 165 HSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            + ++ QL  G +TG+     +A++ E    P +++AP+   A +L+ E + F   + + 
Sbjct: 12  KAGDQRQL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT--DQMV 67

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
             ++ ++    +++ P  +    + S++ +     R             ++V   + +  
Sbjct: 68  MNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQR 116

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +          + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   
Sbjct: 117 VCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + 
Sbjct: 177 E-QPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQW 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           +             E +R  + I    + +        IE +          EP P LF 
Sbjct: 232 RDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFS 274

Query: 464 YIPEDSLLF 472
           Y P ++L+ 
Sbjct: 275 YFPANTLVV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|331652166|ref|ZP_08353185.1| transcription-repair coupling factor [Escherichia coli M718]
 gi|331050444|gb|EGI22502.1| transcription-repair coupling factor [Escherichia coli M718]
          Length = 1164

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 118/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 28  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 86

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 87  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQRVC 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  +  +  G +   G  +++FP   E 
Sbjct: 135 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVNQVMEHGEYATRGALLDLFPMGSE- 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +  VE I +     +    PT   A++  + + + 
Sbjct: 194 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRD 249

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 250 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 292

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 293 PANTLLV 299



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 767 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 824

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 825 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 883 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 938


>gi|322616592|gb|EFY13501.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619893|gb|EFY16767.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622461|gb|EFY19306.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629421|gb|EFY26198.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633907|gb|EFY30645.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636838|gb|EFY33541.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641362|gb|EFY38001.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645127|gb|EFY41656.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652291|gb|EFY48647.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655642|gb|EFY51944.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660947|gb|EFY57177.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665467|gb|EFY61655.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667556|gb|EFY63717.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673650|gb|EFY69752.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677576|gb|EFY73640.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679759|gb|EFY75798.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687232|gb|EFY83204.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194018|gb|EFZ79219.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199427|gb|EFZ84520.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323208844|gb|EFZ93782.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210654|gb|EFZ95533.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217818|gb|EGA02533.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323228043|gb|EGA12184.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229621|gb|EGA13744.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232846|gb|EGA16942.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240118|gb|EGA24162.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242895|gb|EGA26916.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323255555|gb|EGA39314.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261591|gb|EGA45168.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266985|gb|EGA50470.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272089|gb|EGA55503.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 1148

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 121/309 (39%), Gaps = 38/309 (12%)

Query: 165 HSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            + ++ QL  G +TG+     +A++ E    P +++AP+   A +L+ E + F   + + 
Sbjct: 12  KAGDQRQL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT--DQMV 67

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
             ++ ++    +++ P  +    + S++ +     R             ++V   + +  
Sbjct: 68  MNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQR 116

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +          + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   
Sbjct: 117 VCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + 
Sbjct: 177 E-QPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQW 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           +             E +R  + I    + +        IE +          EP P LF 
Sbjct: 232 RDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFS 274

Query: 464 YIPEDSLLF 472
           Y P ++L+ 
Sbjct: 275 YFPANTLVV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|325142431|gb|EGC64835.1| transcription-repair coupling factor [Neisseria meningitidis
           961-5945]
 gi|325198436|gb|ADY93892.1| transcription-repair coupling factor [Neisseria meningitidis G2136]
          Length = 1375

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 144/421 (34%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSD 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q ++    + +       RILL   +    E +  +L +  ++ 
Sbjct: 340 EHALPDLAV-----NRQSDEPLQALKDFQTAFEGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 980  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 1036

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 1037 RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 1094

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 1095 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1143

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1144 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1180

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1181 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1213


>gi|16764571|ref|NP_460186.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62179736|ref|YP_216153.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167991999|ref|ZP_02573098.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168264274|ref|ZP_02686247.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194446626|ref|YP_002040470.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449956|ref|YP_002045215.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197250617|ref|YP_002146826.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|224584278|ref|YP_002638076.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238910964|ref|ZP_04654801.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16419734|gb|AAL20145.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62127369|gb|AAX65072.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194405289|gb|ACF65511.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408260|gb|ACF68479.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197214320|gb|ACH51717.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|205329787|gb|EDZ16551.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205347253|gb|EDZ33884.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|224468805|gb|ACN46635.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261246428|emb|CBG24237.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992993|gb|ACY87878.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157757|emb|CBW17249.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312912204|dbj|BAJ36178.1| transcriptional repressor UlaR [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|322714206|gb|EFZ05777.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323129485|gb|ADX16915.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988107|gb|AEF07090.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 1148

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 121/309 (39%), Gaps = 38/309 (12%)

Query: 165 HSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            + ++ QL  G +TG+     +A++ E    P +++AP+   A +L+ E + F   + + 
Sbjct: 12  KAGDQRQL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT--DQMV 67

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
             ++ ++    +++ P  +    + S++ +     R             ++V   + +  
Sbjct: 68  MNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQR 116

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +          + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   
Sbjct: 117 VCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + 
Sbjct: 177 E-QPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQW 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           +             E +R  + I    + +        IE +          EP P LF 
Sbjct: 232 RDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFS 274

Query: 464 YIPEDSLLF 472
           Y P ++L+ 
Sbjct: 275 YFPANTLVV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|163868353|ref|YP_001609562.1| transcription repair coupling factor [Bartonella tribocorum CIP
           105476]
 gi|161018009|emb|CAK01567.1| transcription repair coupling factor [Bartonella tribocorum CIP
           105476]
          Length = 1166

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 87/526 (16%), Positives = 168/526 (31%), Gaps = 69/526 (13%)

Query: 164 IHSREKVQLLL-GVTGSGKTFTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           I     V ++  GVT   + F +A++   +   +P I +  +    + L        P+ 
Sbjct: 9   IPQNNSVHMIFDGVTDGFEAFALAQLSSEIAQGKPLIYVVRDGTKISHLRQVLNFIEPNL 68

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-----RNDCIVV 275
            V  F             P  D       S    I   R SA   +           I+ 
Sbjct: 69  PVLQF-------------PAWDCLPYDRVSPGIAIMARRLSALARMANLRQNPHPAIILT 115

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           ++ + +  +   E     ++   +G        +  L    ++R  +    G F V G  
Sbjct: 116 TANAIMQKLPPREMIEAQLIHAHVGQRHNMGHFIQFLETNGFERVTVVRDVGEFAVRGGI 175

Query: 336 IEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
           ++IF P  +E    R+  FG+ +E I  F P + +  R    + + A S  V     ++ 
Sbjct: 176 LDIFSPMDVE--PLRLDFFGDTLESIRVFDPESQRTTRQKTELLLQAMSEVVLTPERISR 233

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
                              G       + Q+ T   E +        +E++  +      
Sbjct: 234 FKSN----------YTRTFG-------ISQKNTMLYEAIAQGRRFAGMEHWLPFFY---- 272

Query: 455 GEPPPTLFEY---IPEDSLLFVD----ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
            E   T F++   +P      ++    E +  +       +   + K     Y    PS 
Sbjct: 273 -EHLDTFFDHCGNLPLVFEHLIEEVFIERYRLVEDYYNARKERENDKENTTSYHPIDPSL 331

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           +   P R  E        I  S       LEQ       +        D   E  +    
Sbjct: 332 LYLTPERVLECVKQSSQRIDFSPFNIPQSLEQTVIHTNVK-----QGYDFIKERNAQEKN 386

Query: 568 VE-DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           V   V D I      G ++LL   ++     L + L E           +K ++ ++ ++
Sbjct: 387 VFSSVIDHIASLRAAGKKVLLACWSEGSLNRLVQVLDEHG---------LKKIDVVKSLQ 437

Query: 627 DLRLGKFD-VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
            ++    D +L  + ++  G +  +  ++A  D   + F+RS    
Sbjct: 438 TVKATPRDRILAAVIMIEHGFEAEDLAIIAEQDILGDRFIRSPKRR 483



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 102/279 (36%), Gaps = 45/279 (16%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L      + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 768  HVLTLSATPIPRTLGLALSGVRELSLITTPPVDRMA-VRTFISPFDALVIRETLLREYYR 826

Query: 582  GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +             + EYL      ++++  H ++   +  +I+     G++DVL+  
Sbjct: 827  GGQSFYVCPRISDLAFVEEYLKTHVPELKFVIAHGQMPAGQLDDIMNAFYDGQYDVLLST 886

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  A+  G     ++L Q  GR  R+      L+     K +  
Sbjct: 887  TIIESGLDIPTANTLIVHRAEMFGL----SALYQLRGRVGRSKQRAYALFTFPSGKVLTP 942

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
            A D    RR K                  +++ +D +       ++        +   ++
Sbjct: 943  AAD----RRLK------------------VLQSLDTLGAGFQLASHDMDIRGSGNFLGEE 980

Query: 760  GKAHLK----SLRKQMHLAADNLNFEEA-ARIRD-EIKR 792
               H+K     L ++M         EEA A ++D EI  
Sbjct: 981  QSGHIKEVGFELYQKML--------EEAVAELKDGEISE 1011


>gi|207857277|ref|YP_002243928.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206709080|emb|CAR33413.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
          Length = 1148

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 121/309 (39%), Gaps = 38/309 (12%)

Query: 165 HSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            + ++ QL  G +TG+     +A++ E    P +++AP+   A +L+ E + F   + + 
Sbjct: 12  KAGDQRQL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT--DQMV 67

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
             ++ ++    +++ P  +    + S++ +     R             ++V   + +  
Sbjct: 68  MNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQR 116

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +          + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   
Sbjct: 117 VCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + 
Sbjct: 177 E-QPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQW 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           +             E +R  + I    + +        IE +          EP P LF 
Sbjct: 232 RDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFS 274

Query: 464 YIPEDSLLF 472
           Y P ++L+ 
Sbjct: 275 YFPANTLVV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|205353050|ref|YP_002226851.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272831|emb|CAR37757.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628129|gb|EGE34472.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 1148

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 121/309 (39%), Gaps = 38/309 (12%)

Query: 165 HSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            + ++ QL  G +TG+     +A++ E    P +++AP+   A +L+ E + F   + + 
Sbjct: 12  KAGDQRQL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT--DQMV 67

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
             ++ ++    +++ P  +    + S++ +     R             ++V   + +  
Sbjct: 68  MNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQR 116

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +          + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   
Sbjct: 117 VCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + 
Sbjct: 177 E-QPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQW 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           +             E +R  + I    + +        IE +          EP P LF 
Sbjct: 232 RDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFS 274

Query: 464 YIPEDSLLF 472
           Y P ++L+ 
Sbjct: 275 YFPANTLVV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|311104675|ref|YP_003977528.1| transcription-repair coupling factor [Achromobacter xylosoxidans
           A8]
 gi|310759364|gb|ADP14813.1| transcription-repair coupling factor [Achromobacter xylosoxidans
           A8]
          Length = 1154

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 86/529 (16%), Positives = 165/529 (31%), Gaps = 76/529 (14%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           L  + +  +        GSG  + +A +      P +++    + A +L  E + F P  
Sbjct: 21  LSALKAGARYAQPR-PPGSGDAWLLADLARQASAPLVILTAEPVEAQRLAEEIQLFAPDL 79

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DCIVVSSVS 279
            V               +P  +T      S ++ +   R     SL+ ++ D + V   +
Sbjct: 80  RV-------------RQLPDWETLPYDAFSPHQDLISERLHTLHSLMTKSVDVLTVPVTT 126

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
            +Y +      +      K  D + +  L + L    Y         G F + G  I++F
Sbjct: 127 ALYRLAPPSFLAAYTFSFKQKDKLNEAALRAQLTLANYNHVTQVTAPGEFCLRGGLIDLF 186

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P     V +R+ +F ++IE I  F   T + +  V  +++     +       N      
Sbjct: 187 PM-GSVVPYRLDLFDDEIETIRSFDVDTQRSLYPVREVQLLPGREFPMDEDARN------ 239

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
                          R  E    +       + +        +E Y          E   
Sbjct: 240 -----------RFRARFREVFEGDPSRALPYKDIGNGIPFAGVEYYLPLFF-----EETA 283

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF-EEW 518
           TLF+Y+ + ++        T+  I    +     + T + YGF L S  +   L   E +
Sbjct: 284 TLFDYLTQGTVTV------TVGDIDDAIQRF--NQDTSSRYGF-LKSDRERPVLPPSELF 334

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
             L   T+            +    +     +P        ++ S   + ED   ++   
Sbjct: 335 --LDNETLYARL--------KDFRRLSLTAGQPHPDFRAAPDV-SVARRSEDPIAKLRAL 383

Query: 579 AQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            Q G  R+LL   +    E L + L E  +             + + I           +
Sbjct: 384 VQGGQTRVLLCADSAGRRETLVQMLNEFGVT---------PDAQPDSIEAFLASDAHFGI 434

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
               L  G  +P+  L  + + D    L        T GR  +    + 
Sbjct: 435 VAAPLSTGFGLPQANLAFLTENDLYPGLA-------TTGRRGKRDQERA 476



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 80/202 (39%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +GI    +I   P   +     +R        + + +    ++
Sbjct: 763 VLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTFVRREDG--STLREALLRELKR 820

Query: 582 GLRILLT---VLT-KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +       V T       L E + E  I V   H ++   E  ++++     +++VL+
Sbjct: 821 GGQCYFLHNEVETIHNRRARLEELVPEARIAVA--HGQMPERELEQVMKGFYQQRYNVLL 878

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  AD+ G  +    L Q  GR  R+ + +   Y  T  +  
Sbjct: 879 CTTIIETGIDVPSANTIVIHRADRFGLAQ----LHQLRGRVGRS-HHQAYAYLLTPGED- 932

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
             AI    ++R + ++  ++  
Sbjct: 933 --AITNNAKKRLEAIQAMEELG 952


>gi|121634996|ref|YP_975241.1| transcription-repair coupling factor [Neisseria meningitidis FAM18]
 gi|120866702|emb|CAM10454.1| transcription-repair coupling factor [Neisseria meningitidis FAM18]
 gi|325138289|gb|EGC60858.1| transcription-repair coupling factor [Neisseria meningitidis
           ES14902]
          Length = 1375

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 144/421 (34%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSD 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q ++    + +       RILL   +    E +  +L +  ++ 
Sbjct: 340 EHALPDLAV-----NRQSDEPLQALKDFQTAFEGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 980  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 1036

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 1037 RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 1094

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 1095 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1143

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1144 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1180

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1181 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1213


>gi|325200091|gb|ADY95546.1| transcription-repair coupling factor [Neisseria meningitidis
           H44/76]
          Length = 1379

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 140/413 (33%), Gaps = 51/413 (12%)

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           P+K L   L  + +          F   +D      ++P  +T   +  S ++ +   R 
Sbjct: 31  PHKQLKVVLTQDAEQALRLQTAWLFFRPHDT---AVFLPDWETLPYERFSPHQDLVSERL 87

Query: 261 SATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA   +     D + V   + +  +  V   +     LK G +++   L S LV   Y  
Sbjct: 88  SALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDAGYNH 147

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
               +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  I++
Sbjct: 148 VSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTISPVSEIRL 206

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
                + T            +EE+                           + +      
Sbjct: 207 LPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVYKAVSNGHFG 249

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFVDESHVTIPQISGMYRGDFHRKATLA 498
             +E Y              TLF+YI ED+  + +D+ H      +  +  D   +  +A
Sbjct: 250 AGVEYYLPLFFENEL----ETLFDYIGEDALFVSLDDVHA----EANRFWSDVKSRYAMA 301

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +     P               L P  + +SA   +  L+    ++ +   +   L D  
Sbjct: 302 QGDETYPP--------------LLPQYLYLSADVFAGRLKNYGQVLPDVSGKEYTLPDLA 347

Query: 559 VEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           V       Q ++    + +       RILL   +    E +  +L +  ++ +
Sbjct: 348 V-----NRQADEPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKAK 395



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 984  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLSVKTFVKPFSEGSV---REAVLRELK 1040

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 1041 RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 1098

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 1099 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1147

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1148 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1184

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1185 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1217


>gi|198242225|ref|YP_002215922.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197936741|gb|ACH74074.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326623670|gb|EGE30015.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 1148

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 122/309 (39%), Gaps = 38/309 (12%)

Query: 165 HSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            + ++ QL  G +TG+     +A++ E    P +++AP+   A +L+ E + F   + + 
Sbjct: 12  KAGDQRQL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT--DQMV 67

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
             ++ ++    +++ P  +    + S++ +     R             ++V   + +  
Sbjct: 68  MNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQR 116

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +          + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   
Sbjct: 117 VCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+  F ++I+ +  F   T + +  VE I +   + +    PT   A++  + + 
Sbjct: 177 E-QPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPANEF----PTDKAAIELFRSQW 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           +             E +R  + I    + +        IE +          EP P LF 
Sbjct: 232 RDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFS 274

Query: 464 YIPEDSLLF 472
           Y P ++L+ 
Sbjct: 275 YFPANTLVV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|71275507|ref|ZP_00651793.1| Transcription-repair coupling factor [Xylella fastidiosa Dixon]
 gi|71900755|ref|ZP_00682876.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1]
 gi|170729284|ref|YP_001774717.1| transcription-repair coupling factor [Xylella fastidiosa M12]
 gi|71163807|gb|EAO13523.1| Transcription-repair coupling factor [Xylella fastidiosa Dixon]
 gi|71729485|gb|EAO31595.1| Transcription-repair coupling factor [Xylella fastidiosa Ann-1]
 gi|167964077|gb|ACA11087.1| transcription-repair coupling factor [Xylella fastidiosa M12]
          Length = 1193

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 105/325 (32%), Gaps = 36/325 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           V+ +   + +A   EA + P +++  +   A Q+  + +    H              P 
Sbjct: 25  VSPTALAWHIACAAEAHRGPLLLVTHDNHSAHQVEVDLQTLLAH----------CPGLPV 74

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQMI 294
              P  +T    + S +  I   R +    L      IVV  V  +   +  +       
Sbjct: 75  IGFPDWETLPYDQFSPDPNIVSQRLATLHRLPSLARGIVVVPVQTLMQQLAPLSYIVGGS 134

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
              K+G  +        L +  Y+     +  G F V G  ++++P    DV  R+ +  
Sbjct: 135 FDFKVGQRLILDAEKQRLERAGYRNVPQVMDPGDFTVRGGLLDVYPMGT-DVPLRIELLD 193

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
            +I+ I  F P +   +  V+ + +            L   +      L+ R        
Sbjct: 194 EEIDSIRTFDPESQCSLNQVDVVHMLPGREVPLDPAVLERVLVR----LRERFD------ 243

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL--TGRNPGEPPPTLFEYIPEDSLLF 472
                  L+ R +   + L+   +   IE Y      +GR       TLF+Y+  D L+ 
Sbjct: 244 -------LDTRRSALYQDLKAGLAPSGIEYYLPLFFESGRGGKHATATLFDYLSADLLVL 296

Query: 473 VDE-----SHVTIPQISGMYRGDFH 492
                   +     Q    Y    H
Sbjct: 297 TAPGVSNAADTFWGQTMQRYEQRRH 321



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL + + E  I +   H ++   E   ++ D +   F+VL+   ++  G+DIP   
Sbjct: 872 RMQRDLAQLVPEARIGIA--HGQMPERELERVMLDFQKQHFNVLLSTTIIESGIDIPNAN 929

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +S+
Sbjct: 930 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVVPDRRSM 970


>gi|316984071|gb|EFV63049.1| transcription-repair coupling factor [Neisseria meningitidis
           H44/76]
          Length = 1235

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 140/413 (33%), Gaps = 51/413 (12%)

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           P+K L   L  + +          F   +D      ++P  +T   +  S ++ +   R 
Sbjct: 31  PHKQLKVVLTQDAEQALRLQTAWLFFRPHDT---AVFLPDWETLPYERFSPHQDLVSERL 87

Query: 261 SATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA   +     D + V   + +  +  V   +     LK G +++   L S LV   Y  
Sbjct: 88  SALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDAGYNH 147

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
               +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  I++
Sbjct: 148 VSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTISPVSEIRL 206

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
                + T            +EE+                           + +      
Sbjct: 207 LPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVYKAVSNGHFG 249

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFVDESHVTIPQISGMYRGDFHRKATLA 498
             +E Y              TLF+YI ED+  + +D+ H      +  +  D   +  +A
Sbjct: 250 AGVEYYLPLFFENEL----ETLFDYIGEDALFVSLDDVHA----EANRFWSDVKSRYAMA 301

Query: 499 EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +     P               L P  + +SA   +  L+    ++ +   +   L D  
Sbjct: 302 QGDETYPP--------------LLPQYLYLSADVFAGRLKNYGQVLPDVSGKEYTLPDLA 347

Query: 559 VEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           V       Q ++    + +       RILL   +    E +  +L +  ++ +
Sbjct: 348 V-----NRQADEPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKAK 395



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 840  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLSVKTFVKPFSEGSV---REAVLRELK 896

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 897  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 954

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 955  LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1003

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1004 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1040

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1041 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1073


>gi|325204285|gb|ADY99738.1| transcription-repair coupling factor [Neisseria meningitidis
           M01-240355]
          Length = 1374

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 143/421 (33%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSD 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q ++    +         RILL   +    E +  +L +  ++ 
Sbjct: 340 EHTLPDLAV-----NRQSDEPLQALKDFQTTFDGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 91/273 (33%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 979  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 1035

Query: 581  QGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++          E+    L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 1036 RGGQVFFLHNEVDTIENMRGRLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 1093

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 1094 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1142

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1143 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1179

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1180 GAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDL 1212


>gi|156934399|ref|YP_001438315.1| transcription-repair coupling factor [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532653|gb|ABU77479.1| hypothetical protein ESA_02230 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1148

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/311 (18%), Positives = 123/311 (39%), Gaps = 40/311 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + + ++ QL  G +TG+     +A++ E    P +++AP+   A +L+ E +  F  + V
Sbjct: 11  VKAGDQRQL--GELTGAACAVEVAEMAERHAGPLVLIAPDMQTALRLHDEIQQ-FTESLV 67

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                +             +T      S +++I   R S    L      +++  V+ + 
Sbjct: 68  MNLADW-------------ETLPYDSFSPHQEIISSRLSTLYQLPGMQRGVLILPVNTLM 114

Query: 283 GIGSVESYSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                 S+     + ++ G  + +  L + L +  Y+  D  +  G +   G  ++++P 
Sbjct: 115 QRVCPHSFLHGHALVMQKGQQLSRDTLRAQLDQAGYRHVDQVMAHGEYATRGALLDLYPM 174

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E   +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + 
Sbjct: 175 GSE-QPYRIDFFDDEIDSLRLFDVDTQRTLEEVEAINLLPAHEF----PTDKAAIELFRS 229

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + + R           E +R  + I    + +        IE +          EP P L
Sbjct: 230 QWRDR----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPL 272

Query: 462 FEYIPEDSLLF 472
           F Y P+++L+ 
Sbjct: 273 FSYFPKNTLVV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDNLV--VREAILREVLR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L   + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLANLVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPPPKAM 922


>gi|260582935|ref|ZP_05850719.1| transcription-repair coupling factor [Haemophilus influenzae NT127]
 gi|260094035|gb|EEW77939.1| transcription-repair coupling factor [Haemophilus influenzae NT127]
          Length = 1146

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 121/335 (36%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V        ++++ E  Q   +V+ P+   A +L          N  
Sbjct: 10  IPTQPNDHKILGNVLPGADALAISEITEQNQNLTVVVTPDTRSAVRLSRVLSELSSQNVC 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
            +              P  +T      S +++I   R SA   L      I +  +S + 
Sbjct: 70  LF--------------PDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLM 115

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K GD +   ++   L    Y+  +  +  G + V G  +++FP 
Sbjct: 116 QRLCPPQYLQHNVLLIKKGDRLVIDKMCLQLEAAGYRAVEQVLEHGEYAVRGSLLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  + +I +     +    PT +  +++ + 
Sbjct: 176 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLDEINSINLLPAHEF----PTDDKGIEFFRA 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +              TL
Sbjct: 231 QFRETFGEIRRDPEHIYQQ------------ISKGTLISGIEYWQPLFFAEM-----ATL 273

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+Y+PE +L    E++ T  Q    Y+    R   
Sbjct: 274 FDYLPEQTLFVDMENNQT--QGERFYQDAKQRYEQ 306



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 12/187 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +D+   + I     +G
Sbjct: 753 ILTLTATPIPRTLNMAMNGIRDLSIIST-PPARRLSIKTFVRQNDDLVVREAILREILRG 811

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++  E   ++ D    +++VLV   
Sbjct: 812 GQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCST 871

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +   
Sbjct: 872 IIETGIDVPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKMMTK- 926

Query: 701 IDETTRR 707
             +  RR
Sbjct: 927 --DAERR 931


>gi|161614554|ref|YP_001588519.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363918|gb|ABX67686.1| hypothetical protein SPAB_02303 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 1148

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 121/309 (39%), Gaps = 38/309 (12%)

Query: 165 HSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            + ++ QL  G +TG+     +A++ E    P +++AP+   A +L+ E + F   + + 
Sbjct: 12  KAGDQRQL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT--DQMV 67

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
             ++ ++    +++ P  +    + S++ +     R             ++V   + +  
Sbjct: 68  MNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQR 116

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +          + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   
Sbjct: 117 VCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + 
Sbjct: 177 E-QPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQW 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           +             E +R  + I    + +        IE +          EP P LF 
Sbjct: 232 RDT----------FEVKRDAEHI---YQQVSKGTLPTGIEYWQPLFFS----EPLPPLFS 274

Query: 464 YIPEDSLLF 472
           Y P ++L+ 
Sbjct: 275 YFPANTLVV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|325130353|gb|EGC53119.1| transcription-repair coupling factor [Neisseria meningitidis
           OX99.30304]
          Length = 1292

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 144/421 (34%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDNEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSD 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQYLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q ++    + +       RILL   +    E +  +L +  ++ 
Sbjct: 340 EYTLPDLAV-----NRQADEPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 897  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 953

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 954  RGGQVFFLHNEVDTIENMRERLKTLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 1011

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 1012 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1060

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + ++ I   D        A  ++ I 
Sbjct: 1061 -----------------------LTPEYITKDAEKRLNAIAAADELGAGFTLAMQDLEIR 1097

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1098 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1130


>gi|213051995|ref|ZP_03344873.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 718

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 121/309 (39%), Gaps = 38/309 (12%)

Query: 165 HSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            + ++ QL  G +TG+     +A++ E    P +++AP+   A +L+ E + F   + + 
Sbjct: 12  KAGDQRQL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT--DQMV 67

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
             ++ ++    +++ P  +    + S++ +     R             ++V   + +  
Sbjct: 68  MNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQR 116

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +          + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   
Sbjct: 117 VCQHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + 
Sbjct: 177 E-QPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQW 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           +             E +R  + I    + +        IE +          EP P LF 
Sbjct: 232 RDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFS 274

Query: 464 YIPEDSLLF 472
           Y P ++L+ 
Sbjct: 275 YFPANTLVV 283


>gi|300087739|ref|YP_003758261.1| transcription-repair coupling factor [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527472|gb|ADJ25940.1| transcription-repair coupling factor [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 1148

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 85/512 (16%), Positives = 184/512 (35%), Gaps = 66/512 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A  +L + + S+++ QL + V  + +   +A + + + +  +++  N   A ++  +
Sbjct: 14  QDLAYKKLYEHLSSKQQ-QLDITVLDAVRPILIAALFQEINQSLLIVTHNHERARKIEEQ 72

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
              F P   +  F  +        + P     I+ +  ++ +I R   +      +R   
Sbjct: 73  LSLFVPDGQIRLFPYF-------EFAPFNHEIIDID--LDNEIIRFLSTVFGQNNDRPQV 123

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           I+VS  + +  + +   +S + + +  G  +  + +   L    Y+ ++I    GT+   
Sbjct: 124 IIVSIDALVRLLPAPSDFSAISLSVFPGLDISPESICKQLDTFGYRYENISDTPGTYSRR 183

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++IFP    D   R+  FGN+IE +  + P +    +++E   +   S         
Sbjct: 184 GGILDIFPP-GSDAPVRLEFFGNNIETLRIYDPASQLTKKHIEFATVGPASLI------- 235

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
                     LK + I        +E + L     Y+   L      +    YSR+    
Sbjct: 236 ----------LKPQKISTVLGSSPIEWKNLALIDEYN--SLVNGKQPE----YSRF---W 276

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
            P     T+ +Y+   +++ +D   +   + + +      R+      G    +  DN P
Sbjct: 277 QPFYNQSTILDYLHSKTIILLDSPELIDQKWAFISSETELRRQERISCG----AIPDNYP 332

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             F +W+ L+ +    S            G++  + I+   L        S   ++   +
Sbjct: 333 WPFMDWDQLKQSFSTHSIV----------GLLGWKAIQ-QQLCFDVSPAPSYVGKLNSFF 381

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
              +     G  +++    K   EDL   L E NI             R      +    
Sbjct: 382 QSAHERVINGKTVVIAGYQKARIEDL---LTENNIN----------FIRTSPQNHITNTP 428

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGF 664
             V++    L +G  + +  +    D +  GF
Sbjct: 429 GSVILSSTQLDKGFLLGD-QISIFTDLELFGF 459



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 75/185 (40%), Gaps = 23/185 (12%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV----- 568
           + +  LR     + +SATP    LE     I +  I  T    PP E    +T V     
Sbjct: 743 DYFKKLRKEIDILTLSATPIPRTLELSLSGIKDISIIDT----PPQERHPVKTVVSSFDE 798

Query: 569 EDVYDEINLAAQQGLRILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
             + D I    ++  +I   V  +     R+A  L   + E +I+V   H ++   E  +
Sbjct: 799 YLIKDAIISEMERNGQIF-FVHNRIVDIFRIANQLRNIVPEASIQVA--HGQMSERELEQ 855

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++     G  DVLV   ++  G+DIP    + I DADK G     T L Q  GR  R+  
Sbjct: 856 VMSSFVDGDIDVLVCTTIIESGVDIPNANTIIINDADKLGL----TQLYQLRGRVGRSTQ 911

Query: 684 SKVIL 688
           S    
Sbjct: 912 SAFAY 916



 Score = 40.8 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 10/159 (6%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAP 201
            Y  + DQ  AI ++ K +   +   +L+LG  G GKT   +    +A+   R   ++ P
Sbjct: 601 PYTETSDQLQAIDEIKKDMEQPQPMDRLVLGDVGYGKTEVALRAAFKAVMDNRQVAILVP 660

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
             +LA Q YS F +         F    D            + IE+ +S +  I    H 
Sbjct: 661 TTVLAQQHYSTFSHRLAA-----FPITIDSLSRFRTDTEQSSIIERLASGSIDIIIGTHR 715

Query: 262 ATRSLLERND-CIVVSSVSCIYGIGSVESYSQMIVQLKI 299
             +  ++     +V+      +G+   + + ++  ++ I
Sbjct: 716 LLQGDVKFKHLGLVIIDEEQRFGVLHKDYFKKLRKEIDI 754


>gi|296314303|ref|ZP_06864244.1| transcription-repair coupling factor [Neisseria polysaccharea ATCC
           43768]
 gi|296838999|gb|EFH22937.1| transcription-repair coupling factor [Neisseria polysaccharea ATCC
           43768]
          Length = 494

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 144/421 (34%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L S
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKS 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFNTETQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSD 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q ++    + +       RILL   +    E +  +L +  ++ 
Sbjct: 340 EHTLPDLAV-----NRQSDEPLQALKDFQTAFEGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395


>gi|254514466|ref|ZP_05126527.1| transcription-repair coupling factor [gamma proteobacterium NOR5-3]
 gi|219676709|gb|EED33074.1| transcription-repair coupling factor [gamma proteobacterium NOR5-3]
          Length = 1152

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/330 (16%), Positives = 112/330 (33%), Gaps = 52/330 (15%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           GS  +  +A++    +R  +V   +      L  E   F P       +  ++    + +
Sbjct: 27  GSTASLCIAEL-ATTERLLVVFTEDTAQTQVLARELPFFLPPECEILLLPDWETLPYDNF 85

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
            P  D   E+  +++      R   T     R   +++   + +  +          + L
Sbjct: 86  SPHQDIVSERLRTLH------RLPQT-----RRGVLLLPVAALMQRLPPRHYIEANSLLL 134

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           + G S++ + L S+L K  Y+  D     G F V G  ++I+P     +  R+ +  ++I
Sbjct: 135 EEGQSLDIEGLRSALSKNGYRAVDTVYEHGEFAVRGSLMDIYPM-GSKLPLRIDLLDDEI 193

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           + +  F P T + +  +  + +     +   +P    A+K  +                 
Sbjct: 194 DSLRCFDPETQRTVEKLPRVDLLPAREFPLDKP----AIKAFQ----------------- 232

Query: 418 EAQRLEQRITYDLEM------LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             QR   R   D +       L    +    E Y          +   +L +Y+PE++ L
Sbjct: 233 --QRWYARFDVDHDQCPIFTELSDGRAPGGAEYYLPLFF-----DACESLLDYLPENAAL 285

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYG 501
                H      S   R          +YG
Sbjct: 286 VTLGDH-----YSAATRFWDEASRRFTDYG 310



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 64/178 (35%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ-QGL 583
            + ++ATP    L    G + +  I  T            R Q   +  E  L    +G 
Sbjct: 752 ILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREQDHGLIKEAVLRETLRGG 811

Query: 584 RILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       R  E     L E L + +I V   H ++   +   ++ D    +  +L+  
Sbjct: 812 QVFYVHNEVRTIEQRAAALRELLPDLSIVVA--HGQMHETQLERVMSDFYHQRHHILICS 869

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +            ++
Sbjct: 870 TIIETGIDIPNANTIIIDRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLCPPASAM 923



 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 116 LLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLL 174
           LL+        +     +  +D   F     +  + DQ AAI  + +    +    +L+ 
Sbjct: 569 LLEVYARREARQGVQFTDPEEDYERFAAGFPFEETPDQAAAIEAVERDMFAAGVMDRLVC 628

Query: 175 GVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           G  G GKT      A +  A QR   V+ P  +LA Q Y+ F++ F +  V
Sbjct: 629 GDVGFGKTEVAMRAAFIATANQRQVAVLVPTTLLAQQHYNSFRDRFANWPV 679


>gi|78485512|ref|YP_391437.1| transcription-repair coupling factor [Thiomicrospira crunogena
           XCL-2]
 gi|78363798|gb|ABB41763.1| transcription-repair coupling factor [Thiomicrospira crunogena
           XCL-2]
          Length = 1159

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 101/291 (34%), Gaps = 28/291 (9%)

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
           LA  L         ++ +  F +  DY  P    P  +T    + S ++ I   R     
Sbjct: 47  LAVLLTENMAEANKYSELLRFFAETDY--PILSFPEWETLPYDQFSPHQDIISQRLKTLY 104

Query: 265 SLLERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
            L      +++  VS  I  +   +   +    L+ G++V+       L    Y+R    
Sbjct: 105 QLPSTKQGLLILPVSTLIQKVVPHQFIEKYTFLLQCGETVDIDAFTRQLESSGYQRVSQV 164

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
           +  G F V G  I+++P       +R+ +F ++IE I  F P T + + ++E I++    
Sbjct: 165 MEHGEFAVRGSIIDLYPM-GSRTPYRLDLFDDEIETIRSFDPETQRSVDSIEQIELLPAK 223

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
            Y      ++   +  +            + R  +  R           ++   +   +E
Sbjct: 224 EYDLTPEGISLFRQNFRS-------HFGDDARNSQLYR----------SVKDGQTVDGLE 266

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            Y              T F+Y+P D L F         QI   ++    R 
Sbjct: 267 YYLSLFHSNI-----ATFFDYLPSDCLFFNQGDLQ--AQIRQNWQDYQERY 310



 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 63/171 (36%), Gaps = 11/171 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYDEINLAAQQGL 583
            + ++ATP    L      + +  I  T            +    + V +      ++G 
Sbjct: 764 VMTMTATPIPRTLNMAMNDLRDLSIIATAPAKRLAVQTFVQDWNPDVVKEACLREIRRGG 823

Query: 584 RILLTVLTKRMAEDLTE----YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +I L        E + E     L E  +     H ++   E  +++++    +F++LV  
Sbjct: 824 QIYLLFNNVDKIEQMAEEIQALLPEAKVETA--HGQMHERELEQVMQNFYHRRFNILVCT 881

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +       
Sbjct: 882 TIIETGIDIPTANTILIHRADKFGLAQ----LHQLRGRVGRSHHKAYAYLF 928


>gi|309379212|emb|CBX22169.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 1164

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 144/421 (34%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L S
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLTGRTFWLKTGQTLDIGRLKS 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSD 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDKTYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q ++    + +       RILL   +    E +  +L +  ++ 
Sbjct: 340 EHTLPDLAV-----NRQSDEPLQALKDFQTAFEGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 767  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 823

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 824  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 881

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 882  LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 930

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 931  -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 967

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 968  GAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDL 1000


>gi|218752691|ref|ZP_03531487.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis GM 1503]
 gi|289761156|ref|ZP_06520534.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis GM 1503]
 gi|289708662|gb|EFD72678.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis GM 1503]
          Length = 1234

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 92/518 (17%), Positives = 174/518 (33%), Gaps = 60/518 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             QL++    R     L+    S +    + +      P +V+      A  L +E +  
Sbjct: 26  FQQLMQRAGGRPDELTLI-APASARLLVASALARQ--GPLLVVTATGREADDLAAELRGV 82

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           F   AV    S+ +    E   P  DT   +  +    + R+ H    + L     +VV+
Sbjct: 83  FGD-AVALLPSW-ETLPHERLSPGVDTVGTRLMA----LRRLAHPD-DAQLGPPLGVVVT 135

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           SV  +    + +      + L +GD      +++ LV+  Y R D+   RG F V G  +
Sbjct: 136 SVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGIL 195

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IF +   +   RV  +G++I E+  F     + I  ++   + A +             
Sbjct: 196 DIF-APTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFA-----------CR 243

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           + +  E                   +    +  L  L    +   +E     L      +
Sbjct: 244 ELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWS----D 299

Query: 457 PPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYG-FRLPSCMDNRP 512
               L + +P+ + + V +          +    R       ++A  G     + +D   
Sbjct: 300 GHALLTDQLPDGTPVLVCDPEKVRTRAAHLIRTGREFLEASWSVAALGTAENQAPVDVEQ 359

Query: 513 LRFEEWNCLRPTTIVVSATPGS--WELEQ-CQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           L    +  L       +A  G   W L Q      +E  +R           R  +  ++
Sbjct: 360 LGGSGFVEL-DQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSA------RGHQRDID 412

Query: 570 DVYDEINLAAQQ-GLRILL---TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +++  +       G   L+   T    R+ E L+E             S+      ++  
Sbjct: 413 EIFAMLRAHIATGGYAALVAPGTGTAHRVVERLSE-------------SDTPAGM-LDPG 458

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +  + G   VL G   LR+G+ IP   LV I + D  G
Sbjct: 459 QAPKPGVVGVLQGP--LRDGVIIPGANLVVITETDLTG 494



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E     T V   +D      L  + 
Sbjct: 799 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGPHDDKQIAAALRREL 854

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +           +     + E     R +  H ++        ++     + D+LV
Sbjct: 855 LRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILV 914

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +        
Sbjct: 915 CTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPP---- 966

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
           Q+ + ET   R   +  N +  
Sbjct: 967 QVPLTETAYDRLATIAQNNELG 988


>gi|304387420|ref|ZP_07369611.1| transcription-repair coupling factor [Neisseria meningitidis ATCC
           13091]
 gi|304338513|gb|EFM04632.1| transcription-repair coupling factor [Neisseria meningitidis ATCC
           13091]
          Length = 1301

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/420 (17%), Positives = 145/420 (34%), Gaps = 57/420 (13%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSD 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQHLYLSADIFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
              L D  V  R +   ++ + D          RILL   +    E +  +L +  ++ +
Sbjct: 340 EHILPDLAVN-RQSEEPLQALKD---FQTAFEGRILLCAESLGRRETMLGFLQQNGLKAK 395



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 906  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 962

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 963  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 1020

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 1021 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1069

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1070 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1106

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1107 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1139


>gi|283138935|gb|ADB12538.1| transcription-repair coupling factor [uncultured bacterium 9F08]
          Length = 1155

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 109/322 (33%), Gaps = 38/322 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +++   A +   +V+ P+   A +L  E +          F +      P 
Sbjct: 26  LYGSSFGLVISQTASAAEGIVLVVTPDTPSATRLEDELR----------FYNRGQDEIPV 75

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
              P  +T      S  + I   R +    L      I++  ++ +   I   +      
Sbjct: 76  LGFPDWETLPYDTFSPFQDIISERLATLYQLPGLKRGILILPIATLMHRIAPRDYIEGSS 135

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +GD++E + +   L    Y+     I  G F V G  ++++P       +R+ +F 
Sbjct: 136 LVLDVGDTLELEAMRRRLESNGYRCVSQVIEHGEFAVRGSLLDLYPM-GSRTPFRIELFD 194

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           +++E I  F P + +    VE I++     +      +    +  +   +          
Sbjct: 195 DEVESIRTFDPDSQRTEEKVEQIRLLPAREFPLHDEAIKRFREAYRSHFE---------- 244

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFV 473
                + +  R       +    +   +E Y              TL +Y+PE++ L  +
Sbjct: 245 -GDPQKSIVYR------DVSNGLAPPGVEYYLPLFFP-----ETATLLDYLPENTRLFTL 292

Query: 474 DESHVTIPQISGMYRGDFHRKA 495
           D       Q    YR    R  
Sbjct: 293 DGVDEGAEQ---FYRECQERFE 311



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 72/191 (37%), Gaps = 13/191 (6%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVY 572
           E +  LR     + ++ATP    L    G I E  II         V+        E V 
Sbjct: 750 ERFKALRAEVDVLTLTATPIPRTLNMAMGGIRELSIIASPPARRLAVKTFVHEWNPELVK 809

Query: 573 DEINLAAQQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +      ++G ++          E    DL E L E +I V   H ++   E   ++ D 
Sbjct: 810 EACLREVRRGGQVYFLHNEVDTIEKISRDLEELLPEASIGVA--HGQMPERELERVMSDF 867

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              +F++LV   ++  G+DIP    + I  AD+ G  +    L Q  GR  R+ +     
Sbjct: 868 YHQRFNLLVCTTIIETGIDIPSANTIIINRADRLGLAQ----LYQLRGRVGRSHHRAYAY 923

Query: 689 YADTITKSIQL 699
                 +S+  
Sbjct: 924 LLIPSKRSMTK 934



 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 49/103 (47%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A   G ++ + V T    ++  ++L +   +  +R+  +     + E+
Sbjct: 643 GKTEVAMRAAFVAVMGGRQVAVLVPTTLLAEQHTQNLRDRFADWPVRIESLSRFRSSKEQ 702

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEG 663
            ++++ L  G  D+++G + LL+EG+     G+V I +  + G
Sbjct: 703 QQVLKGLEEGSVDIVIGTHKLLQEGIRYKRLGMVIIDEEHRFG 745


>gi|27365411|ref|NP_760939.1| transcription-repair coupling factor [Vibrio vulnificus CMCP6]
 gi|37680549|ref|NP_935158.1| transcription-repair coupling factor [Vibrio vulnificus YJ016]
 gi|27361558|gb|AAO10466.1| transcription-repair coupling factor [Vibrio vulnificus CMCP6]
 gi|37199297|dbj|BAC95129.1| transcription-repair coupling factor [Vibrio vulnificus YJ016]
          Length = 1153

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/299 (19%), Positives = 111/299 (37%), Gaps = 38/299 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+    ++A++        +++ P+   A +L SE    F    V  F          
Sbjct: 24  LPGASLALSVAELANTHANHTVLIVPDPQTALKLQSEI-EQFYTAHVTIF---------- 72

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS-QMI 294
              P  +T      S +++I   R +    L  + D I +  VS +    S   +  Q  
Sbjct: 73  ---PDWETLPYDNFSPHQEIISDRIATLYQLPSQTDGITIVPVSTLLQRQSPRDFLLQHT 129

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + + +GD    ++L   L    Y+  D     G +   G  +++FP    D  +R+  F 
Sbjct: 130 LMVNVGDRYSLEKLRLQLDNSGYRHVDQVFGPGEYASRGSILDLFPMGSRD-PYRIDFFD 188

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P   + I  ++ I++     +    PT   A++      + R+    +  
Sbjct: 189 DEIDTIRTFDPENQRSIEEIQQIRLLPAHEF----PTTEAAIE------EFRIRWRSQFD 238

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
              E + +  +++              IE +          E   TLF+YI  DS L V
Sbjct: 239 ARREPESVYMQVSK-------GVWPAGIEYWQPLFF-----EQTETLFDYINRDSQLLV 285



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 16/187 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R +   V  V + I     +
Sbjct: 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRESDDAV--VREAILREIMR 811

Query: 582 GLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T  ++AEDLT+ + E  + +   H +++  E   ++ D    +F++LV
Sbjct: 812 GGQVYFLHNQVETIEKVAEDLTKLVPEARVTIA--HGQMRERELERVMNDFYHQRFNLLV 869

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           KS+
Sbjct: 870 CTTIIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKSM 925

Query: 698 QL-AIDE 703
              AI  
Sbjct: 926 TKDAIKR 932


>gi|262278954|ref|ZP_06056739.1| transcription-repair coupling factor [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259305|gb|EEY78038.1| transcription-repair coupling factor [Acinetobacter calcoaceticus
           RUH2202]
          Length = 1153

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/500 (14%), Positives = 166/500 (33%), Gaps = 71/500 (14%)

Query: 155 AAIAQL-LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
             I+QL L+ + + EK   +  + GS       ++        +V+A N    AQL SE 
Sbjct: 4   QEISQLNLQQLKAGEKR-WVGSLLGSSAALLFKEIAVQHPSLLVVVARNNQHVAQLESEL 62

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           + +     +      ++    +   P  D   E+ + ++              + +   +
Sbjct: 63  EFYGIKPTI---FPDWEILPYDRLSPHQDIVSERLAILSN-------------MPQKGVL 106

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           ++S+ +    +            + +G   + ++    LV+  Y   D     G F V G
Sbjct: 107 LISASTLAQRVAPYSWVLGEHFDIHVGQKFDLEQQKLRLVQAGYHLVDTVYDHGEFAVRG 166

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++IF +  ++   R+ +F ++I+ +  F P T +  + +++  +     +        
Sbjct: 167 SIMDIF-ASGQEAPIRIDLFDDEIDTLKFFDPETQRTTKPLKSFTVLPAKEFPLKEARSI 225

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                     + R  EL       +            + +    +   IE Y      + 
Sbjct: 226 ---------FRDRYSELFPTANPKK--------NPIYQDVLEGITSPGIEFYLPLFFDKA 268

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY--GFRLPS----- 506
             +   T+  Y P++    V  ++     ++  ++  F R            LP      
Sbjct: 269 QMQSQSTVTTYFPKN--CIVITTNDVDSDLTNFWKEVFRRYEDRRHNVDQPILPPEELFI 326

Query: 507 CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
             ++      ++  +     +VSA      +E+  G +  ++ +P  L   P + +    
Sbjct: 327 APNHLLSALNQFPRM-----LVSA----EIVEEKAGALNLKVEQPPKLPVDPKKEKPFSV 377

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            V+   DE N        +LL   +    E L + L             +  +  ++   
Sbjct: 378 -VKKYIDEANHP------VLLVAESAGRRESLRDGLRAS----------LGDIPGVDTFE 420

Query: 627 DLRLGKFDVLVGINLLREGL 646
             +  +F + +    L  GL
Sbjct: 421 QFQTSQFAIAITNAPLDRGL 440



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 97/259 (37%), Gaps = 52/259 (20%)

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
             +  L+ VDE H    +     +        L      +P     R L    ++ +R  
Sbjct: 725 FKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIP-----RTLNMA-FSGMRDL 778

Query: 525 TIVVSATP-------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN- 576
           +I+  ATP        ++  E  +  I E I+R                QV  +++E++ 
Sbjct: 779 SII--ATPPARRLAVKTFVQEHTEASIKEAILRELLR----------GGQVYFLHNEVDT 826

Query: 577 -LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A + +R+L+                E  + V   H +++  E  ++++     +F+V
Sbjct: 827 IERAAENIRVLV---------------PEARVAVA--HGQMRERELEQVMQQFYHKEFNV 869

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +  
Sbjct: 870 LVCSTIIETGIDVPNANTILIERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVP 922

Query: 696 SIQLAIDETTRRR-EKQLE 713
           SI+    +  +R    Q  
Sbjct: 923 SIKHLKGDAEKRLDAIQRA 941



 Score = 38.9 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 81/233 (34%), Gaps = 33/233 (14%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q G ++ + V T    ++  E   +   +  +R+  +         
Sbjct: 638 GKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKAH 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            + I DL  GK D++VG + LL+E +   + GL+ + +  + G    +        +A R
Sbjct: 698 TKNIEDLIAGKVDIVVGTHKLLQENVQFKDLGLMVVDEEHRFGVRDKERI------KALR 751

Query: 681 NVNSKVILYADTITKSIQLA---------IDETTRRREKQLEHNKKHNINPQSVKEKIME 731
                + L A  I +++ +A         I     RR       ++H       +  I E
Sbjct: 752 ADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEH------TEASIKE 805

Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR-----KQMHLAADNLN 779
            I   LL       +  +   +  + +  +  +   R      QM      L 
Sbjct: 806 AILRELLRGGQVYFLHNEVDTIERAAENIRVLVPEARVAVAHGQMRE--RELE 856


>gi|320155796|ref|YP_004188175.1| transcription-repair coupling factor [Vibrio vulnificus MO6-24/O]
 gi|319931108|gb|ADV85972.1| transcription-repair coupling factor [Vibrio vulnificus MO6-24/O]
          Length = 1153

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/299 (19%), Positives = 111/299 (37%), Gaps = 38/299 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+    ++A++        +++ P+   A +L SE    F    V  F          
Sbjct: 24  LPGASLALSVAELANTHANHTVLIVPDPQTALKLQSEI-EQFYTAHVTIF---------- 72

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS-QMI 294
              P  +T      S +++I   R +    L  + D I +  VS +    S   +  Q  
Sbjct: 73  ---PDWETLPYDNFSPHQEIISDRIATLYQLPSQTDGITIVPVSTLLQRQSPRDFLLQHT 129

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + + +GD    ++L   L    Y+  D     G +   G  +++FP    D  +R+  F 
Sbjct: 130 LMVNVGDRYSLEKLRLQLDNSGYRHVDQVFGPGEYASRGSILDLFPMGSRD-PYRIDFFD 188

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P   + I  ++ I++     +    PT   A++      + R+    +  
Sbjct: 189 DEIDTIRTFDPENQRSIEEIQQIRLLPAHEF----PTTEAAIE------EFRIRWRSQFD 238

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
              E + +  +++              IE +          E   TLF+YI  DS L V
Sbjct: 239 ARREPESVYMQVSK-------GVWPAGIEYWQPLFF-----EQTETLFDYINRDSQLLV 285



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 16/187 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R +   V  V + I     +
Sbjct: 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRESDDAV--VREAILREIMR 811

Query: 582 GLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T  ++AEDLT+ + E  + +   H +++  E   ++ D    +F++LV
Sbjct: 812 GGQVYFLHNQVETIEKVAEDLTKLVPEARVTIA--HGQMRERELERVMNDFYHQRFNLLV 869

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           KS+
Sbjct: 870 CTTIIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKSM 925

Query: 698 QL-AIDE 703
              AI  
Sbjct: 926 TKDAIKR 932


>gi|325136213|gb|EGC58821.1| transcription-repair coupling factor [Neisseria meningitidis M0579]
          Length = 1296

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 144/421 (34%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HRRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L S
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKS 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDNEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSD 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQYLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q ++    + +       RILL   +    E +  +L +  ++ 
Sbjct: 340 EYTLPDLAV-----NRQADEPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 901  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 957

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 958  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 1015

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 1016 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1064

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1065 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1101

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1102 GAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDL 1134


>gi|308389402|gb|ADO31722.1| transcription-repair coupling factor [Neisseria meningitidis
           alpha710]
          Length = 1227

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 144/421 (34%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HRRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L S
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKS 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDNEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSD 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQYLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q ++    + +       RILL   +    E +  +L +  ++ 
Sbjct: 340 EYTLPDLAV-----NRQADEPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 832  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 888

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 889  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 946

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 947  LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 995

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 996  -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1032

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1033 GAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDL 1065


>gi|213965538|ref|ZP_03393733.1| transcription-repair coupling factor [Corynebacterium amycolatum
           SK46]
 gi|213951922|gb|EEB63309.1| transcription-repair coupling factor [Corynebacterium amycolatum
           SK46]
          Length = 1215

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 91/560 (16%), Positives = 174/560 (31%), Gaps = 86/560 (15%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            E    L G   + ++  +  +   +  P +V+      A  L +E K+      V  F 
Sbjct: 48  GEDELALTGA-DAVRSHLIYAMSTKV--PVLVVTATGREAEDLTAEVKSMIGDR-VAMFP 103

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG--I 284
           S+ +    E   P  DT               R  A   +      +++++V  +    +
Sbjct: 104 SW-ETLPHEKLSPAVDTV------------AQRRKALYDVRRGKVDVLIAAVRSLVQPIV 150

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
             +E+ +   + +++      + L+  LV   Y   D+   RG F V G  +++FP+  E
Sbjct: 151 DDLEAETSAPIHVQLDQDC--ENLVERLVHHGYSHVDMVGRRGQFAVRGGIVDVFPA-TE 207

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIR--NVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
           ++  R+ ++G+++ ++  F     + I    V+ + I+     +        A       
Sbjct: 208 ELPVRIELWGDEVTDLRAFSVADQRTISEVEVDQLDIFPCRALLIDDDVKAAA------- 260

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
                 E     R  + Q +  RI             + +E+    ++          L 
Sbjct: 261 ------EKLATTRSGQVQEMLTRIG-------DGQWVEGMESLIPLISQHPMKM----LT 303

Query: 463 EYIPEDSLLFV---DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519
           E +PE + + +   +        +              A  G  +P   D   L    + 
Sbjct: 304 EVMPEKTHVLMCGPERIRSRAQDLISAGEEFMAAAWETAAMGGSVPIATD--GLEPSAYR 361

Query: 520 CLRPTTIVVS---ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            L    +  S   + PG  E    +  ++     P          R    ++  +  ++ 
Sbjct: 362 SLASIPMPTSWHISPPGMLEAGVTEDDVLPLTFEPGPAP------RGDLKEIGHLMKQLR 415

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR-YMHSEVKTLERIEIIRDLRLGKFDV 635
            A   G R+     T   A    E   E  I  R     E     R             +
Sbjct: 416 DATVAGERVAYVAATPAGARRQAEKFREAGIATRMAAGPEYPESGR-------------I 462

Query: 636 LVGINLLREGLDIPEC---GLVAILDADKEGFLRSKTSL------IQTIGRAARNVNSKV 686
            V   +L  GL  P      L  I + D  G   ++ +L       +  GR       K 
Sbjct: 463 TVYQGVLHGGLVFPRIPGGALTLITEQDITGNRIAEGALGGRRKPAKRRGRVDPLA-LKA 521

Query: 687 ILYADTITKSIQLAIDETTR 706
             Y    T  I   +  T R
Sbjct: 522 GDYVVHDTHGIGRFVKLTER 541



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + ++ PP +     T V     + V   I    
Sbjct: 801 VLTMSATPIPRTLEMSIAGIREM----SQILTPPQDRHPVLTYVGAQSDKQVAAAIRREL 856

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          + + + +       R +  H ++   +    +      ++DVLV
Sbjct: 857 LRDGQVFYLHNKVETIDKVAQNIRNLVPEARVVVAHGQMGEEQLERTVDGFWQREYDVLV 916

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + + +A   G  +    L Q  GR  R+       +        
Sbjct: 917 CTTIVETGLDIANANTLIVENAHHMGLSQ----LHQLRGRVGRSRERAYAYFLYPEN--- 969

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET+  R   +  N    
Sbjct: 970 -QTLTETSYDRLSTIAQNNDLG 990


>gi|325132515|gb|EGC55208.1| transcription-repair coupling factor [Neisseria meningitidis M6190]
          Length = 1232

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 144/421 (34%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSD 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q ++    + +       RILL   +    E +  +L +  ++ 
Sbjct: 340 EHALPDLAV-----NRQSDEPLQALKDFQTAFEGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 837  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 893

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 894  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 951

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 952  LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1000

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1001 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1037

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1038 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1070


>gi|317402005|gb|EFV82605.1| transcription-repair coupling factor [Achromobacter xylosoxidans
           C54]
          Length = 1160

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 78/489 (15%), Positives = 156/489 (31%), Gaps = 70/489 (14%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
             GSG  + +A +      P +V+    + A +L  E   F P   V     + +    +
Sbjct: 41  PPGSGDAWLLADLARQAGAPLVVLTAEPLEAQRLAEEIALFAPGLRVRQLPDW-ETLPYD 99

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           A+ P  D   E+            H+    +++  D + V   + +Y +      +    
Sbjct: 100 AFSPHQDLISERL-----------HTLHSLMMKTVDVLTVPVTTALYRLAPPSFLAAYTF 148

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
             K  D + +  L + L    Y         G F + G  I++FP     + +R+ +F +
Sbjct: 149 SFKQKDKLNEAALRAQLTLANYNHVTQVTAPGEFCLRGGLIDLFPMGSA-LPYRLDLFDD 207

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +IE I  F   T + +  V  +++     +     + N                  +   
Sbjct: 208 EIETIRSFDVDTQRSLYPVREVQLLPGREFPMDEESRNRF-----------RARFREVFE 256

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF--- 472
              ++ L        + +        +E Y          +   TLF+Y+ E +L     
Sbjct: 257 GDPSRALP------YKDIGNGIPFAGVEYYLPLFF-----DETATLFDYLAEGTLTVTVG 305

Query: 473 -VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D++ +   Q +G              YGF L S  +   L         P + +    
Sbjct: 306 DIDDAMMRFSQDTGSR------------YGF-LKSDRERPVL---------PPSALFLDE 343

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
              +   +    +     +P        ++  AR   + +     L  +   R+LL   +
Sbjct: 344 QALYARLKDFRRLALGAGQPHPDFRAAPDVSVARRAEDPIAKLRALVGRHDGRVLLCADS 403

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
               E L + L E  +             + E I           +    L  G ++P+ 
Sbjct: 404 AGRRETLVQMLNEFGVT---------PDAQPETIEAFLASDAHFGIVAAPLATGFELPQA 454

Query: 652 GLVAILDAD 660
           GL  + + D
Sbjct: 455 GLAFLTEND 463



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 73/189 (38%), Gaps = 19/189 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +GI    +I   P   +     +R        + + +    ++
Sbjct: 769 VLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTFVRREDG--STLREALLRELKR 826

Query: 582 GLRILLT---VLT-KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +       V T       L E + E  I V   H ++   +  ++++     +++VL+
Sbjct: 827 GGQCYFLHNEVETIHNRRARLEELVPEARIAVA--HGQMPERDLEQVMKGFYQQRYNVLL 884

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA----DTI 693
              ++  G+D+P    + I  AD+ G  +    L Q  GR  R+ +           D I
Sbjct: 885 CTTIIETGIDVPSANTIVIHRADRFGLAQ----LHQLRGRVGRSHHQAYAYLLTPGEDAI 940

Query: 694 TKSIQLAID 702
           T + +  ++
Sbjct: 941 TSNAKKRLE 949


>gi|218768305|ref|YP_002342817.1| transcription-repair coupling factor [Neisseria meningitidis Z2491]
 gi|121052313|emb|CAM08643.1| transcription-repair coupling factor [Neisseria meningitidis Z2491]
          Length = 1296

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 142/416 (34%), Gaps = 59/416 (14%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  +   A +L + ++ F PH+                ++P  +T   +  S ++ + 
Sbjct: 37  VVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSPHQDLV 83

Query: 257 RMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
             R SA   +     D + V   + +  +  V   +     LK G +++   L S LV  
Sbjct: 84  SERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDA 143

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V 
Sbjct: 144 GYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVS 202

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I++     + T            +EE+                           + +  
Sbjct: 203 EIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVYKAVSN 245

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
                 +E Y              TLF+YI ED+L     S   +   +  +  D   + 
Sbjct: 246 GHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSDVKSRY 298

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            +A+     P               L P  + +SA   +  L+    ++ +   +   L 
Sbjct: 299 AMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGKEHTLP 344

Query: 556 DPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           D  V       Q ++    + +       RILL   +    E +  +L +  ++ +
Sbjct: 345 DLAV-----NRQSDEPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKAK 395



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 901  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 957

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 958  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 1015

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 1016 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1064

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1065 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1101

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1102 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1134


>gi|315656036|ref|ZP_07908934.1| transcription-repair coupling factor [Mobiluncus curtisii ATCC
           51333]
 gi|315490100|gb|EFU79727.1| transcription-repair coupling factor [Mobiluncus curtisii ATCC
           51333]
          Length = 1165

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 97/623 (15%), Positives = 194/623 (31%), Gaps = 81/623 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
                L+ G+ GS +  T            +V+AP+   A QL  E   +     VE F 
Sbjct: 33  GFYAPLIAGLPGSDEGLT------------VVLAPSTRAATQLARELGAYTTG--VELFP 78

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
            + +    E   PR DT   +  ++        H  T    +     +V  V       +
Sbjct: 79  DW-ETLPHERLSPRADTMARRIWAL--------HRVTHPHPQDAVHFLVMPVRAALAPVN 129

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                  +  +++GD+ ++  + + L++  Y+R D+   RG F V G  +++F S     
Sbjct: 130 AHIADYPLFTVQVGDTYDRDTMAADLLRLGYERVDMVGARGQFAVRGGLLDVF-SPTSAH 188

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
             R+ +FG++++ I  F     +    ++ T+   A    +        A       L  
Sbjct: 189 PVRIELFGDEVDTIRAFTASDQRTFGGDIRTLVAPACRELLLDDTARKLA-----ASLAG 243

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           ++ +  +   L                       + +E+ S  L     G     LF  +
Sbjct: 244 QMPQAAEILNLAA----------------EGKYGEGLESLSPLL-----GAEMVPLFSLL 282

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
           P  + L   +     P++                  +   +     PL  E+ + L    
Sbjct: 283 PPGARLVATDR----PRLEARATELVETTQEFLAASWSAAAGGGEVPLEIEQASFLTLEQ 338

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
           +  +A            +    +      V   + +     +   +   I   A +   +
Sbjct: 339 LYAAAQEAHM---DTVFVSPFAVGENAQNVGAQIAMEPLAGETG-LIGTIGALASKNWNV 394

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++T   K MA  L + L E ++  + +          +    L  G   + V    L EG
Sbjct: 395 VITTTGKGMASRLRDVLSEADVPAKVV----------KDATSLNDGTVQITVAP--LDEG 442

Query: 646 LDIPECGLVAILDADKEGFLRSKTS---------LIQTIGRAARNVNSKVILYADTITKS 696
             +P   L+ + +A   G  +S+ +           + I          V+     I + 
Sbjct: 443 YQVPAAQLLVVSEAQVLGKKKSRHAADKANLPARRRKAIDPLTLTQGDYVVHLHHGIGRF 502

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID-AQQLSL 755
           ++LA     R RE   +        P        ++  P    D  +  +  +      +
Sbjct: 503 VKLAKRTMGRGRETTSKEYVVLEYAPSKRNGPADQLWVPTDSLDLLSKYVGGESPTLSKM 562

Query: 756 SKKKGKAHLKSLRKQMHLAADNL 778
                       RK +   A  L
Sbjct: 563 GGADWAKTKSKARKAVKEIAREL 585



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 69/196 (35%), Gaps = 21/196 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV-----EDVYDEINLA 578
            + +SATP    LE          IR    +  P E R    T V     + V   I   
Sbjct: 768 VLTMSATPIPRTLEMAITG-----IRGMSTLTTPPEDRHPVLTYVGAYSDKQVAAAIRRE 822

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +  ++       +    +  +L E     RVR  H ++   +   ++ D    +FDVL
Sbjct: 823 LLRDGQVFFVHNRVQSINRIAAHLAELVPEARVRVGHGQMSEKQLESVMVDFWNQEFDVL 882

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  GLD+     + +  AD+ G  +    L Q  GR  R        +      +
Sbjct: 883 VSTTIVENGLDVTNANTIIVDRADRFGLSQ----LHQLRGRVGRGRERGYAYFLYPPGTT 938

Query: 697 IQLAIDETTRRREKQL 712
           +     ET   R K +
Sbjct: 939 MN----ETAFERLKTI 950


>gi|92113691|ref|YP_573619.1| transcription-repair coupling factor [Chromohalobacter salexigens
           DSM 3043]
 gi|91796781|gb|ABE58920.1| transcription-repair coupling factor [Chromohalobacter salexigens
           DSM 3043]
          Length = 1150

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 92/500 (18%), Positives = 168/500 (33%), Gaps = 66/500 (13%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+APN   A +L          +A+++F  +     P    P  +T      S ++ 
Sbjct: 41  PLMVVAPNTASAQRL---------ESALQFFADH-----PILSFPDWETLPYDSFSPHQD 86

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMIVQLKIGDSVEQKELLSSLV 313
           I   R    R L E    IVV  ++ +    S   Y +  ++ L+ G  ++++     L 
Sbjct: 87  IVSTRLKTLRQLQEGTRGIVVVPINTLMQRLSPTDYIAGRVLTLRTGMQLDREGFRDRLS 146

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
           +  Y+  +     G   + G  I+++P    D   R+ +F ++I+ +  F P T + +  
Sbjct: 147 RAGYRAVETVYEPGEHALRGALIDLYPM-GSDHPLRIDLFDDEIDTLRHFDPDTQRSLDK 205

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           +E I++     Y   R    +A+   +E  +                 ++ R        
Sbjct: 206 IERIELLPAHEYSLSR----SAIACFREGFET-------------LFDVDPRQCPLYNDA 248

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
                   +E Y          E   TLFE++ +++ + +        +          R
Sbjct: 249 LKGIPSPGLEQYLPLFF-----EETATLFEHLADNTRIALLPGVHDAAEHHWSAIE--SR 301

Query: 494 KATLAEYGFR--LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
              L     R  LP      P+  E +  ++    V        E EQ    +V     P
Sbjct: 302 YDNLGVDPTRPLLPPAHAFVPVA-EVFAAIKRHPRVA----IVEEDEQQPHAVVPTTQPP 356

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
             +       R    ++E        AA   LRILL   +    E L E L         
Sbjct: 357 PDVAINARAHRPLA-KLESFL-----AAHDDLRILLVAESSGRREALEETLAPLG----- 405

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
                + L   E  +    G   + +    L EGL + +     I + +  G +  +   
Sbjct: 406 -----RPLAVAEGWQHFVDGSAPLAICEGSLDEGLWLEDASTCVITETELYGDVVRQAR- 459

Query: 672 IQTIGRAARNVNSKVILYAD 691
               GRA  +    V   A+
Sbjct: 460 --RRGRATDDNELAVRHLAE 477



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 7/178 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    II         V+    +     + + +     +G 
Sbjct: 752 ILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQRNEGVLKEALLREILRGG 811

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  +     + E     R    H ++   E   ++ D    +F+VLV   +
Sbjct: 812 QVYFLHNEVKTIDATAAKITELVPDARVGIAHGQLPERELERVMSDFYHKRFNVLVCSTI 871

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 872 IETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAMTR 925



 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 4/133 (3%)

Query: 95  SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQP 154
           SE       +A  ++  +   LL           ++     +D   F     +  + DQ 
Sbjct: 548 SETWDKAKRKAAEKIRDTAAELLDTYARREAREGFACAPPDEDYARFAASFPFEETPDQH 607

Query: 155 AAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLY 210
           AAI  ++  +  +R   +++ G  G GKT      A +     R  +V+ P  +LA Q Y
Sbjct: 608 AAIEAVIGDMTAARPMDRVVCGDVGFGKTEVAMRAAFLAVESGRQVVVLVPTTLLAQQHY 667

Query: 211 SEFKNFFPHNAVE 223
             F++ F   AV+
Sbjct: 668 DNFRDRFADTAVQ 680


>gi|313639808|gb|EFS04539.1| transcription-repair-coupling factor [Listeria seeligeri FSL
           S4-171]
          Length = 205

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 84/219 (38%), Gaps = 15/219 (6%)

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           +   N   A +LY +  +    + +  +             P  +    + S  + ++  
Sbjct: 1   MXXHNLYHAQKLYDDLLSLMEADRLFLY-------------PADELISSELSISSPELRG 47

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQ 316
            R  A   L+     IV+  V+ +  +    S  +     +  G+ ++ + L   LV   
Sbjct: 48  QRVEALDFLISGKPGIVIVPVAGLRKMLPPVSLWKHFNISIVEGEEIDPEVLRQQLVTMG 107

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y    +    G F V G  I+I+P   E+   R+ +F  +++ +  F   T +    VE 
Sbjct: 108 YTMSGMVNTPGEFSVRGGIIDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTSRVEE 166

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
            ++   +  +  +      +  +++++ + L EL+++  
Sbjct: 167 FRLLPATEIILDQSYYPDIVHRLEKKMILTLNELKEKED 205


>gi|325202005|gb|ADY97459.1| transcription-repair coupling factor [Neisseria meningitidis
           M01-240149]
 gi|325208243|gb|ADZ03695.1| transcription-repair coupling factor [Neisseria meningitidis
           NZ-05/33]
          Length = 1227

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 144/421 (34%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HRRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L S
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKS 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDNEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSD 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQYLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q ++    + +       RILL   +    E +  +L +  ++ 
Sbjct: 340 EYTLPDLAV-----NRQADEPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 832  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 888

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 889  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 946

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 947  LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 995

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 996  -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1032

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1033 GAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDL 1065


>gi|56479827|ref|NP_707029.2| transcription-repair coupling factor [Shigella flexneri 2a str.
           301]
 gi|56383378|gb|AAN42736.2| transcription-repair coupling factor [Shigella flexneri 2a str.
           301]
          Length = 1148

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 117/307 (38%), Gaps = 36/307 (11%)

Query: 167 REKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +   Q LLG +TG+     +A++ E    P +++AP+   A +L+ E  + F    V   
Sbjct: 12  KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNL 70

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             + +    +++ P  D    + S++ +     R             ++V   + +  + 
Sbjct: 71  ADW-ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-----------GILIVPVNTLMQRVC 118

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                    + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E 
Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE- 177

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           + +R+  F ++I+ +  F   + + +   E I +     +    PT   A++  + + + 
Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEAEAINLLPAHEF----PTDKAAIELFRSQWRD 233

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                       E +R  + I    + +        IE +          EP P LF Y 
Sbjct: 234 T----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYF 276

Query: 466 PEDSLLF 472
           P ++LL 
Sbjct: 277 PANTLLV 283



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|111225581|ref|YP_716375.1| transcription-repair coupling factor [Frankia alni ACN14a]
 gi|111153113|emb|CAJ64860.1| Transcription-repair coupling factor (TRCF) [Frankia alni ACN14a]
          Length = 1246

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 87/500 (17%), Positives = 155/500 (31%), Gaps = 79/500 (15%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P + +      A  L +          V  F S+ +    E   PR DT  ++ +     
Sbjct: 95  PVLAVVATGREAEDLTAALAGLLGPEVVAVFPSW-ETLPHERLSPRADTVGQRLAV---- 149

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           + R+ H A+  L      IVV+ V  +             V L  GD+ +  E+++ LV 
Sbjct: 150 LRRLAHPASTGL--PPLRIVVAPVRSVLQPQVAGLGELAPVSLAAGDTADLDEVVARLVG 207

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R D+   RG   V G  +++FP   E+   RV  FG+++E+I  F     + +   
Sbjct: 208 MAYHRVDLVERRGEIAVRGGILDVFPP-TEEHPLRVEFFGDEVEDIRRFAVADQRALPEG 266

Query: 375 ETI---------KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           ++                  +        A      EL  R  +L               
Sbjct: 267 DSGPPGPGGRGLFAPPCRELLLTEDVRGRA-----AELATRYPQLVDM------------ 309

Query: 426 ITYDLEMLETTGSCQSIENYSRYL-TGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIP 481
               L+ + +    + +E  +  L  G +       L + +P  + + V +         
Sbjct: 310 ----LDTIASGIPVEGMEALAPVLVDGMSL------LLDDLPAGTHVLVCDPERVRSRAS 359

Query: 482 QISGMYRGDFHRKATLAEYGFRLP---SCMDNRPLRFEE---------WNCLRPTTIVVS 529
           ++    +       ++A  G   P        R +             W  + P T  ++
Sbjct: 360 ELVRTSQEFLEASWSVAALGGGAPIDLGAAAYRSIAEVRERAGALGLPWWSVSPFTSTLT 419

Query: 530 -ATPGSWELEQCQGIIVEQIIRPTGLVDPPV--EIRSA---RTQVEDVYDEINLAAQQGL 583
            A  G  +                   D  V   +R A         V  ++     +  
Sbjct: 420 GAEAGGLDQVGQADAAAGVAGGLVAEGDDTVVASLRPAPLYHGDTAAVIADVKGWLAESW 479

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+LL       A+ L E L E ++  RY               +L  G    +V    L 
Sbjct: 480 RVLLVTEGHGPAQRLVEMLREADLGARY-----------AEDAELAAGV--AVVTRGQLV 526

Query: 644 EGLDIPECGLVAILDADKEG 663
            G       L  + ++D  G
Sbjct: 527 TGFTSDMLRLAVLTESDIAG 546



 Score = 42.4 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 51/150 (34%), Gaps = 13/150 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV--EDVYDEINLAAQQ 581
            + +SATP    LE          IR    +D P E R    T V   D         ++
Sbjct: 843 VLTMSATPIPRTLEMSITG-----IRELSTIDTPPEERHPVLTSVAPYDTRQVAAAIRRE 897

Query: 582 GLR---ILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVL 636
            LR   +          +     L E     R    H ++      +++      KFDVL
Sbjct: 898 LLREGQVFFIHNRVESIDRAAARLRELVPEARIATAHGQMNEDALEQVMVSFWEKKFDVL 957

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLR 666
           V   ++  GLDI     + +  AD  G  +
Sbjct: 958 VCTTIVESGLDISNANTLVVERADVFGLSQ 987


>gi|15608160|ref|NP_215536.1| transcription-repair coupling factor Mfd (TRCF) [Mycobacterium
           tuberculosis H37Rv]
 gi|15840448|ref|NP_335485.1| transcription-repair coupling factor [Mycobacterium tuberculosis
           CDC1551]
 gi|31792211|ref|NP_854704.1| transcription-repair coupling factor Mfd (TRCF) [Mycobacterium
           bovis AF2122/97]
 gi|121636949|ref|YP_977172.1| putative transcription-repair coupling factor mfd [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148660802|ref|YP_001282325.1| transcription-repair coupling factor [Mycobacterium tuberculosis
           H37Ra]
 gi|148822229|ref|YP_001286983.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis F11]
 gi|167968120|ref|ZP_02550397.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis H37Ra]
 gi|215402835|ref|ZP_03415016.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis 02_1987]
 gi|224989421|ref|YP_002644108.1| putative transcription-repair coupling factor [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253799950|ref|YP_003032951.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis KZN 1435]
 gi|254363936|ref|ZP_04979982.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis str. Haarlem]
 gi|260185931|ref|ZP_05763405.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis CPHL_A]
 gi|289446601|ref|ZP_06436345.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis CPHL_A]
 gi|289744756|ref|ZP_06504134.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis 02_1987]
 gi|297633546|ref|ZP_06951326.1| transcription-repair coupling factor [Mycobacterium tuberculosis
           KZN 4207]
 gi|297730531|ref|ZP_06959649.1| transcription-repair coupling factor [Mycobacterium tuberculosis
           KZN R506]
 gi|306775155|ref|ZP_07413492.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu001]
 gi|306781930|ref|ZP_07420267.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu002]
 gi|306783715|ref|ZP_07422037.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu003]
 gi|306788070|ref|ZP_07426392.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu004]
 gi|306792403|ref|ZP_07430705.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu005]
 gi|306796806|ref|ZP_07435108.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu006]
 gi|306802692|ref|ZP_07439360.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu008]
 gi|306806871|ref|ZP_07443539.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu007]
 gi|306967072|ref|ZP_07479733.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu009]
 gi|306971262|ref|ZP_07483923.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu010]
 gi|307078991|ref|ZP_07488161.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu011]
 gi|307083551|ref|ZP_07492664.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu012]
 gi|313657860|ref|ZP_07814740.1| transcription-repair coupling factor [Mycobacterium tuberculosis
           KZN V2475]
 gi|54037787|sp|P64327|MFD_MYCBO RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|54041091|sp|P64326|MFD_MYCTU RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|3261715|emb|CAB06859.1| PROBABLE TRANSCRIPTION-REPAIR COUPLING FACTOR MFD (TRCF)
           [Mycobacterium tuberculosis H37Rv]
 gi|13880619|gb|AAK45299.1| transcription-repair coupling factor [Mycobacterium tuberculosis
           CDC1551]
 gi|31617799|emb|CAD93908.1| PROBABLE TRANSCRIPTION-REPAIR COUPLING FACTOR MFD (TRCF)
           [Mycobacterium bovis AF2122/97]
 gi|121492596|emb|CAL71064.1| Probable transcription-repair coupling factor mfd [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|134149450|gb|EBA41495.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504954|gb|ABQ72763.1| transcription-repair coupling factor [Mycobacterium tuberculosis
           H37Ra]
 gi|148720756|gb|ABR05381.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis F11]
 gi|224772534|dbj|BAH25340.1| putative transcription-repair coupling factor [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253321453|gb|ACT26056.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis KZN 1435]
 gi|289419559|gb|EFD16760.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis CPHL_A]
 gi|289685284|gb|EFD52772.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis 02_1987]
 gi|308216305|gb|EFO75704.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu001]
 gi|308325321|gb|EFP14172.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu002]
 gi|308331498|gb|EFP20349.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu003]
 gi|308335304|gb|EFP24155.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu004]
 gi|308339112|gb|EFP27963.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu005]
 gi|308342784|gb|EFP31635.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu006]
 gi|308346693|gb|EFP35544.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu007]
 gi|308350608|gb|EFP39459.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu008]
 gi|308355241|gb|EFP44092.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu009]
 gi|308359196|gb|EFP48047.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu010]
 gi|308363098|gb|EFP51949.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu011]
 gi|308366762|gb|EFP55613.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis SUMu012]
 gi|323720520|gb|EGB29602.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis CDC1551A]
 gi|326904753|gb|EGE51686.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis W-148]
 gi|328459693|gb|AEB05116.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis KZN 4207]
          Length = 1234

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             QL++    R     L+    S +    + +      P +V+      A  L +E +  
Sbjct: 26  FQQLMQRAGGRPDELTLI-APASARLLVASALARQ--GPLLVVTATGREADDLAAELRGV 82

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           F   AV    S+ +    E   P  DT   +  +    + R+ H    + L     +VV+
Sbjct: 83  FGD-AVALLPSW-ETLPHERLSPGVDTVGTRLMA----LRRLAHPD-DAQLGPPLGVVVT 135

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           SV  +    + +      + L +GD      +++ LV+  Y R D+   RG F V G  +
Sbjct: 136 SVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGIL 195

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
           +IF +   +   RV  +G++I E+  F     + I  ++   + A +
Sbjct: 196 DIF-APTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFA 241



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E     T V   +D      L  + 
Sbjct: 799 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGPHDDKQIAAALRREL 854

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +           +     + E     R +  H ++        ++     + D+LV
Sbjct: 855 LRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILV 914

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +        
Sbjct: 915 CTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPP---- 966

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
           Q+ + ET   R   +  N +  
Sbjct: 967 QVPLTETAYDRLATIAQNNELG 988


>gi|313668421|ref|YP_004048705.1| transcription-repair coupling factor [Neisseria lactamica ST-640]
 gi|313005883|emb|CBN87339.1| transcription-repair coupling factor [Neisseria lactamica 020-06]
          Length = 1164

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 144/421 (34%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L S
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKS 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSD 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q ++    + +       RILL   +    E +  +L +  ++ 
Sbjct: 340 EHTLPDLAV-----NRQSDEPLQALKDFQTAFEGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 92/273 (33%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 767  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 823

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 824  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 881

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DI     + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 882  LCSTIIETGIDIHNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 930

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 931  -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 967

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 968  GAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDL 1000


>gi|254480585|ref|ZP_05093832.1| transcription-repair coupling factor [marine gamma proteobacterium
           HTCC2148]
 gi|214039168|gb|EEB79828.1| transcription-repair coupling factor [marine gamma proteobacterium
           HTCC2148]
          Length = 1154

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/376 (16%), Positives = 116/376 (30%), Gaps = 56/376 (14%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G      +A++    +R  +V+  +   A  L  E               Y D       
Sbjct: 26  GGADARCIAEL-ADPKRLLVVITADTSAALALEREL------------PFYLDGALEILA 72

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
            P  +T      S ++ I   R S    L   R   ++V   + ++ +      +   + 
Sbjct: 73  FPDWETLPYDNFSPHQDIISERLSTLFRLPRCRGGVLIVPVPTLMHRLPPTHYVAGSSLV 132

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L+ G S++      +L +  Y+  +     G F + G   +I+P       +R+ +  ++
Sbjct: 133 LEEGQSIDLDSFRRNLERNGYRNVETVFEHGEFALRGSLFDIYPMGSS-FPFRIDLLDDE 191

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           ++ +  F P + + +  V+ I +     Y      +                        
Sbjct: 192 VDTLRTFDPESQRTVEKVDAINMLPAREYPLEGSAITRFQMN-----------------W 234

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
            EA  ++         +    S    E Y          +   TLF+Y+PED+ L     
Sbjct: 235 WEAFDVDHDSCPSYVEVSAGRSPGGCEYYLPLFF-----DSCATLFDYLPEDAALITTGD 289

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGF-----RLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           H    +      G         EYG       LP      P+  EE+  L     V+   
Sbjct: 290 HHGAAEHFWQEVGSR-----FEEYGIDPRRPLLPPEKGFTPV--EEFYRLLKQFPVL--- 339

Query: 532 PGSWELEQCQGIIVEQ 547
               EL       V Q
Sbjct: 340 ----ELRHNPDAPVHQ 351



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 62/176 (35%), Gaps = 7/176 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         ++       +  V + +     +G 
Sbjct: 754 ILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIALVKEAVLRETLRGG 813

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  E+    L E   ++ V   H +++  E   ++         +L+   +
Sbjct: 814 QVYYLHNEVKSIEESARKLRELVPDLNVGVAHGQMRETELEHVMSSFYHQHNHILMCTTI 873

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  G+DIP    + I  AD+ G  +    L Q  GR  R+ +            +I
Sbjct: 874 IETGIDIPNANTIIIERADRFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPRSAI 925


>gi|254550004|ref|ZP_05140451.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
          Length = 1234

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             QL++    R     L+    S +    + +      P +V+      A  L +E +  
Sbjct: 26  FQQLMQRAGGRPDELTLI-APASARLLVASALARQG--PLLVVTATGREADDLAAELRGV 82

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           F   AV    S+ +    E   P  DT   +  +    + R+ H    + L     +VV+
Sbjct: 83  FGD-AVALLPSW-ETLPHERLSPGVDTVGTRLMA----LRRLAHPD-DAQLGPPLGVVVT 135

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           SV  +    + +      + L +GD      +++ LV+  Y R D+   RG F V G  +
Sbjct: 136 SVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGIL 195

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
           +IF +   +   RV  +G++I E+  F     + I  ++   + A +
Sbjct: 196 DIF-APTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFA 241



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E     T V   +D      L  + 
Sbjct: 799 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGPHDDKQIAAALRREL 854

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +           +     + E     R +  H ++        ++     + D+LV
Sbjct: 855 LRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILV 914

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +        
Sbjct: 915 CTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPP---- 966

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
           Q+ + ET   R   +  N +  
Sbjct: 967 QVPLTETAYDRLATIAQNNELG 988


>gi|146311285|ref|YP_001176359.1| transcription-repair coupling factor [Enterobacter sp. 638]
 gi|145318161|gb|ABP60308.1| transcription-repair coupling factor [Enterobacter sp. 638]
          Length = 1148

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 123/334 (36%), Gaps = 38/334 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           +  +   Q  LG +TG+     +A++ E    P +++AP+   A +L+ E + F   +++
Sbjct: 9   LPGKAGDQRQLGELTGAACATLVAEIAERHAGPVVLVAPDMQNALRLHDEIRQFT--DSL 66

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
            + ++ ++    +++ P  +    + S++ +     R             ++V   + + 
Sbjct: 67  VFNLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQR-----------GVLIVPVNTLMQ 115

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +          + +K G+ + +  L S L    Y+  D  +  G +   G  ++++P  
Sbjct: 116 RVCPHSYLHGHALVMKKGERLSRDALRSQLDSAGYRHVDQVMEHGEYATRGALLDLYPM- 174

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
             D  +R+  F ++I+ +  F   T + +  V+ I +     +    PT  TA++  + +
Sbjct: 175 GSDQPYRLDFFDDEIDSLRVFDADTQRTLEEVDAINLLPAHEF----PTDKTAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            + +                     +  + +        IE +          EP P LF
Sbjct: 231 WRDKFDVKRDA-------------EHIYQQVSKGTLPAGIEYWQPLFFS----EPLPALF 273

Query: 463 EYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
            Y P  +L+    +       +        R   
Sbjct: 274 SYFPAKTLIV--NTGDLESSATRFENETRARFEN 305



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREVLR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ A+ L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLFNDVENIQKTADKLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIVIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLMTPHPKAM 922


>gi|260597486|ref|YP_003210057.1| transcription-repair coupling factor [Cronobacter turicensis z3032]
 gi|260216663|emb|CBA29998.1| Transcription-repair-coupling factor [Cronobacter turicensis z3032]
          Length = 1167

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/311 (18%), Positives = 122/311 (39%), Gaps = 40/311 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + + ++ QL  G +TG+     +A++ E    P  ++AP+   A +L+ E +  F  + V
Sbjct: 30  VKAGDQRQL--GELTGAACAVEVAEMAERHAGPLALIAPDMQTALRLHDEIQQ-FTESLV 86

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                +             +T      S +++I   R S    L      +++  V+ + 
Sbjct: 87  MNLADW-------------ETLPYDSFSPHQEIISSRLSTLYQLPGMQRGVLILPVNTLM 133

Query: 283 GIGSVESYSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                 S+     + ++ G  + +  L + L +  Y+  D  +  G +   G  ++++P 
Sbjct: 134 QRVCPHSFLHGHALVMQKGQQLSRDTLRAQLDQAGYRHVDQVMAHGEYATRGALLDLYPM 193

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E   +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + 
Sbjct: 194 GSE-QPYRIDFFDDEIDSLRLFDVDTQRTLEEVEAINLLPAHEF----PTDKAAIELFRS 248

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + + R           E +R  + I    + +        IE +          EP P L
Sbjct: 249 QWRDR----------FEVKRDPEHI---YQQVSKGTLPAGIEYWQPLF----FNEPLPPL 291

Query: 462 FEYIPEDSLLF 472
           F Y P+++L+ 
Sbjct: 292 FSYFPKNTLVV 302



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + I     +
Sbjct: 770 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDNLV--VREAILREVLR 827

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L   + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 828 GGQVYYLYNDVENIQKAAERLANLVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 885

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 886 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPPPKAM 941


>gi|162147670|ref|YP_001602131.1| transcription-repair coupling factor [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786247|emb|CAP55829.1| putatve transcription-repair coupling factor [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 1131

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 89/478 (18%), Positives = 167/478 (34%), Gaps = 59/478 (12%)

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           MA+       P + +A +    A++        P+  +  F             P  D  
Sbjct: 1   MARRAREHDGPVLHVARDDAGMARIGELLSFVAPNAEILRF-------------PSWDCL 47

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCI--VVSSVSCI-YGIGSVESYSQMIVQLKIGD 301
                S N  I   R +    LLE       V+++V  +   +    ++    + L  GD
Sbjct: 48  PYDRVSPNPAIVAERVATLTRLLEPATAPRIVLTTVGGLVQRVAPRAAFRGQSLTLAAGD 107

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
           S++Q  L+  LV   Y R D  +  G F   G   +IFPS  E    R+ +FG+++E I 
Sbjct: 108 SLDQALLIDLLVAAGYNRTDTVMEPGEFATRGGIFDIFPS-GEAEPVRLDLFGDEVENIR 166

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
            F P T +    ++   +   + +   + +++            R    +  G    +  
Sbjct: 167 RFDPATQRSSDRLDRFVMRPVADFTLDQASISRF----------RTGWRDLFGPAAASDP 216

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI- 480
           L + ++              +E++          E   TL +Y+P  S++   +    + 
Sbjct: 217 LYEHVS-------DGRRHAGLEHWLPLFH-----EHLETLVDYLPGVSIILAHQVEDVLA 264

Query: 481 PQISGMYRGDFHRKATLAEYGF---RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537
            ++  +      R+  + E       LP       L  + W+ +     V+  +P +   
Sbjct: 265 ARLEMIADHFEARRQPVREGEVPYRALPP--HLMYLDRKGWDGILSGHPVMLFSPFA--- 319

Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD-EINLAAQQGLRILLTVLTKRMAE 596
                  V+   RP G++   V    AR  V  + D ++   A+ G R  ++  T+   E
Sbjct: 320 RPDNAGGVDAGGRP-GILFASVAGGGARENVFAMLDTQVRQWAETGRRAYVSAWTRGSRE 378

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            +   L E  +RV       +T +     +DL  G   +L     L  G        V
Sbjct: 379 RIATLLREHGMRV-------ETFDGWARAQDLPPGTVGLL--TLGLERGFIADNLAFV 427



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 96/278 (34%), Gaps = 41/278 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             + +SATP    L+     + E  +    PT  +     I    + V  + + I     
Sbjct: 729 HVLTLSATPLPRTLQLALTGVREMSLIATPPTDRLAVRTFIMPFDSVV--IREAIQRERF 786

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G +I   V      + +   L +     R +  H  +   E   ++ +   GK+D+L+ 
Sbjct: 787 RGGQIFCVVPRIEDLDRMAARLQDIVPDARLVQAHGRLTPTELERVMTEFSDGKYDILLS 846

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            N++  GLD+P    + I  AD  G  +    L Q  GR  R             T  + 
Sbjct: 847 TNIVESGLDMPAVNTLIIHRADMFGLGQ----LYQLRGRVGRGKQRGYAYLTWPQTHVLS 902

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
            A +   +R E                   +M+ +D +       ++        +L   
Sbjct: 903 AAAE---KRLE-------------------VMQTLDTLGAGFTLASHDLDLRGAGNLLGD 940

Query: 759 KGKAHLK----SLRKQMHL-AADNLNFEEA---ARIRD 788
           +   H++     L +QM   A   L  E+    A+ RD
Sbjct: 941 EQSGHIREVGIELYQQMLEDAVAELRVEKGRRKAQDRD 978


>gi|221639209|ref|YP_002525471.1| transcription-repair coupling factor [Rhodobacter sphaeroides
           KD131]
 gi|221159990|gb|ACM00970.1| Transcription-repair coupling factor [Rhodobacter sphaeroides
           KD131]
          Length = 1168

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 84/514 (16%), Positives = 170/514 (33%), Gaps = 73/514 (14%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +       LL G         +AK ++    P I +A +      + +      P   V 
Sbjct: 3   LMQNGTRILLGGAPEGYDARLVAKELDRGA-PVIHVARDDKRLEAMRTALAVMAPRAVVL 61

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV---SSVSC 280
                         +P  D       S N +I   R +   +L        V   +  + 
Sbjct: 62  -------------ELPAWDCLPYDRVSPNPEISARRMATLAALAHGMPGAFVLLTTLNAA 108

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
              I + E         ++GD V++  L S L +  +   D     G + + G  ++I+P
Sbjct: 109 TQRIPAREVLRAASFSARVGDRVDEGRLRSYLARMGFSLTDTVTEPGDYAIRGGIVDIYP 168

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
             +     R+  FG+ ++    F P T + +  ++ +++   S  +     +    +  +
Sbjct: 169 PGVAG-PVRLDFFGDVLDGARRFDPETQRTVEKLDLVELAPVSEVMLDEGAITRFRQNYR 227

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
            E           G                E +      Q +E++  +       E   T
Sbjct: 228 IE-------FGAAGTD----------DPLYEAVSAGRKHQGMEHWLPFFH-----ERLET 265

Query: 461 LFEYIPEDSLLFVDE-SHVTIPQISGMYRGDFHRKATLAEYGFRL-----PSCMDNRPLR 514
           LF+Y+PE +++  D+ +   I +  G+      R+  +   G RL     P+  D   L 
Sbjct: 266 LFDYLPEAAVMLDDQVTPARISRWEGIADQYDARREAMTAKG-RLDTVYKPAAPDLLYLD 324

Query: 515 FEEWNC-----LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
              W              ++ +PG   L+   G +           +   E  S    + 
Sbjct: 325 EAAWEAAVAGHRVIQLSPLAQSPGPGVLD-AGGRMGRSF-----APERQAENISLFGALV 378

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D    +    ++  ++++   ++   E L   L E  ++   +         ++ IRD+ 
Sbjct: 379 DHVRAL----REDRQVVIASWSEGARERLKGLLEEAGLQGTKL---------VQDIRDVP 425

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            G+    + +  L +G   P  GL  I + D  G
Sbjct: 426 EGRGGTHLMVWALEQGFTAP--GLAVISEQDVLG 457



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 91/259 (35%), Gaps = 37/259 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 757 HVLTLTATPIPRTLQLSLTGVRDLSIIATPPVDRLA-IRTYVSEFDTVTIREALLRERYR 815

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       D+  +L +    V Y+  H ++   E  E +     GKFDVL+  
Sbjct: 816 GGQSFFVVPRLSDLPDMEAFLRDHVPEVSYVVAHGQLAAGELDERMNAFYDGKFDVLLAT 875

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R                +  
Sbjct: 876 TIVESGLDIPTANTMIVHRADMFGLSQ----LYQIRGRVGRAKTRAYCYLTTKPRAPL-- 929

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                                 PQ++K  +++  +D +       ++        +L  +
Sbjct: 930 ---------------------TPQAIKRLRLLASLDSLGAGFNLASHDLDLRGAGNLLGE 968

Query: 759 KGKAHLK----SLRKQMHL 773
           +   H+K     L +QM  
Sbjct: 969 EQSGHIKEVGYELYQQMLE 987



 Score = 39.3 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            Y  + DQ +AIA ++K + S     +L++G  G GKT      A V         V+ P
Sbjct: 605 PYQETDDQLSAIADVVKDLESGSPMDRLVVGDVGFGKTEVAMRAAFVAALAGMQVAVICP 664

Query: 202 NKILAAQLYSEFKNFF 217
             +LA Q +  F   F
Sbjct: 665 TTLLARQHFRSFSERF 680


>gi|215410623|ref|ZP_03419431.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis 94_M4241A]
 gi|298524516|ref|ZP_07011925.1| transcription-repair coupling factor [Mycobacterium tuberculosis
           94_M4241A]
 gi|298494310|gb|EFI29604.1| transcription-repair coupling factor [Mycobacterium tuberculosis
           94_M4241A]
          Length = 1234

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             QL++    R     L+    S +    + +      P +V+      A  L +E +  
Sbjct: 26  FQQLMQRAGGRPDELTLI-APASARLLVASALARQG--PLLVVTATGREADDLAAELRGV 82

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           F   AV    S+ +    E   P  DT   +  +    + R+ H    + L     +VV+
Sbjct: 83  FGD-AVALLPSW-ETLPHERLSPGVDTVGTRLMA----LRRLAHPD-DAQLGPPLGVVVT 135

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           SV  +    + +      + L +GD      +++ LV+  Y R D+   RG F V G  +
Sbjct: 136 SVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGIL 195

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
           +IF +   +   RV  +G++I E+  F     + I  ++   + A +
Sbjct: 196 DIF-APTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFA 241



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E     T V   +D      L  + 
Sbjct: 799 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGPHDDKQIAAALRREL 854

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +           +     + E     R +  H ++        ++     + D+LV
Sbjct: 855 LRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILV 914

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +        
Sbjct: 915 CTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPP---- 966

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
           Q+ + ET   R   +  N +  
Sbjct: 967 QVPLTETAYDRLATIAQNNELG 988


>gi|166030531|ref|ZP_02233360.1| hypothetical protein DORFOR_00192 [Dorea formicigenerans ATCC
           27755]
 gi|166029693|gb|EDR48450.1| hypothetical protein DORFOR_00192 [Dorea formicigenerans ATCC
           27755]
          Length = 102

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/85 (63%), Positives = 65/85 (76%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           ++  Y P+GDQP AIA+L+KG     + Q LLGVTGSGKTFTMA VI+ +Q+P +V+A N
Sbjct: 18  IKAPYKPTGDQPQAIAELVKGFKEGNQCQTLLGVTGSGKTFTMANVIQQLQKPTLVIAHN 77

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVS 227
           K LAAQLY EFK  FP NAVEYFVS
Sbjct: 78  KTLAAQLYGEFKEMFPDNAVEYFVS 102


>gi|54309559|ref|YP_130579.1| putative transcription-repair coupling factor [Photobacterium
           profundum SS9]
 gi|46913995|emb|CAG20777.1| putative transcription-repair coupling factor [Photobacterium
           profundum SS9]
          Length = 1151

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 75/504 (14%), Positives = 175/504 (34%), Gaps = 71/504 (14%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           ++G+    ++A++  A Q P + + P+   A +L  E  + F    V  F  + +    +
Sbjct: 24  LSGAALALSVAELSHAHQGPILAVVPDTQTALRLQPEI-SQFTSVEVNVFPDW-ETLPYD 81

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D         ++++ R+    T+S    +  I+V   + +  +   +   +  +
Sbjct: 82  NFSPHQDI-------TSDRLARLYKLPTQS----DGIILVPISTLLQRLTPRDYLRKHAL 130

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            ++ GD +   +L   L    Y+  +  +  G +   G  +++FP    +  +R+  F +
Sbjct: 131 IVRNGDRLSLDKLRLQLEASGYRHAEQVMEHGEYASRGSLLDLFPM-GSNQPYRIDFFDD 189

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
            ++ I +F P   +    +++I +     +    PT   A++  +   + R     +   
Sbjct: 190 KVDSIRQFDPENQRSTGEIDSINLLPAHEF----PTDEIAIENFRMRWRERFEARREPES 245

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS-LLFVD 474
           +   Q++ +R                IE +          E   TLF+Y+P+++ L+ + 
Sbjct: 246 I--YQQVSKRT-----------WPAGIEYWQPLFF-----EKTETLFDYLPDETLLVTLG 287

Query: 475 ESHVTIPQISGMYRG--DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           E   ++           D  R   L               L  +E    +        T 
Sbjct: 288 ELEPSVDHFLADADHRFDQRRVDPL------------RPLLEPKELWLTKDEMFRGFKTL 335

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ-GLRILLTVLT 591
               +             PT    P + I     Q+++ +  +    +Q   +I+ +V +
Sbjct: 336 PQVRIRHENEPDKAGRYNPTLTPVPEIIIN---QQLKEPFAALRRFTEQFKGKIVFSVAS 392

Query: 592 KRMAEDLTEYL---YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           +   E L + L     R I    +   ++                D  + I    +G  +
Sbjct: 393 EGRREALLDLLARIKMRPIVCASLEEAIEAPS-------------DYTLVIGAAEQGFIL 439

Query: 649 PECGLVAILDADKEGFLRSKTSLI 672
               +  I ++D  G   ++    
Sbjct: 440 ESPSVAFICESDLLGERVNQRRRR 463



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 85/244 (34%), Gaps = 13/244 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     +  + + +     +
Sbjct: 755 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVREKDDAI--IREAVLREIMR 812

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E  TE L +     R  + H +++  +  +++ D    +F++LV  
Sbjct: 813 GGQVYFLHNEVDSIEKTTEELAKLIPEARITFAHGQMRERDLEKVMGDFYHQRFNLLVCT 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + +  AD  G  +    L Q  GR  R+ +           K +  
Sbjct: 873 TIIETGIDIPTANTIIMNRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHKKRMTK 928

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             D   R    +   +        +   +I    + +  E +        +  + + ++ 
Sbjct: 929 --DAVKRLEAIESLEDLGAGFTLATHDLEIRGAGELLGDEQSGQIQSIGFSLFMEMLEQA 986

Query: 760 GKAH 763
            +A 
Sbjct: 987 VEAL 990


>gi|260204238|ref|ZP_05771729.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis K85]
 gi|289573660|ref|ZP_06453887.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis K85]
 gi|289538091|gb|EFD42669.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis K85]
          Length = 1234

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             QL++    R     L+    S +    + +      P +V+      A  L +E +  
Sbjct: 26  FQQLMQRAGGRPDELTLI-APASARLLVASALARQG--PLLVVTATGREADDLAAELRGV 82

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           F   AV    S+ +    E   P  DT   +  +    + R+ H    + L     +VV+
Sbjct: 83  FGD-AVALLPSW-ETLPHERLSPGVDTVGTRLMA----LRRLAHPD-DAQLGPPLGVVVT 135

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           SV  +    + +      + L +GD      +++ LV+  Y R D+   RG F V G  +
Sbjct: 136 SVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGIL 195

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
           +IF +   +   RV  +G++I E+  F     + I  ++   + A +
Sbjct: 196 DIF-APTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFA 241



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E     T V   +D      L  + 
Sbjct: 799 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGPHDDKQIAAALRREL 854

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +           +     + E     R +  H ++        ++     + D+LV
Sbjct: 855 LRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILV 914

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +        
Sbjct: 915 CTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPP---- 966

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
           Q+ + ET   R   +  N +  
Sbjct: 967 QVPLTETAYDRLATIAQNNELG 988


>gi|319943635|ref|ZP_08017916.1| transcription-repair coupling factor [Lautropia mirabilis ATCC
           51599]
 gi|319742868|gb|EFV95274.1| transcription-repair coupling factor [Lautropia mirabilis ATCC
           51599]
          Length = 1264

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/372 (17%), Positives = 136/372 (36%), Gaps = 47/372 (12%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI------VMAPNKILAAQ 208
           A+I +L  G  S +   L   +     T   A   +  +RP +      ++       ++
Sbjct: 22  ASIHRLPAGFGSSDAWLLAQRLAPENATAASAAHDDPTERPPVTGKTRVIVCAQPADCSR 81

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L +E   F P  A+             A +P  +T      S ++ +   R SA   L  
Sbjct: 82  LAAEIAWFAPSLAI-------------ARLPDWETLPYDSLSPHQDLVSERLSALYRLQG 128

Query: 269 RN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
           R  D ++V++ +  + +      +    Q   G  +++  L + L    Y+  +  +  G
Sbjct: 129 RKLDVLLVAASTAAHRLAPPSWLASRTFQFSQGMKLDEAALKAQLTLAGYEHVEQVLRPG 188

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            + V G  I++FP     + +R+ +F ++++ +  F P T + +  V+ +K+     +  
Sbjct: 189 EYTVRGGLIDLFPM-GSPLPYRLDLFDDELDSLRTFDPDTQRSLYPVKAVKLLPGREFPL 247

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
                  A    +   + R    + +   +   R           +    +   IE Y  
Sbjct: 248 D----EAARSAFRGRWRER---FDGDPSRVALYR----------DIGNGVTASGIEYYLP 290

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC 507
                   +   TLF+Y+PED+ + +   H  +      +R D  ++     +    P+ 
Sbjct: 291 LFF-----DETATLFDYLPEDAEIIL---HGDVQGQLQAFRADARQRFDFIGHDAERPAL 342

Query: 508 M-DNRPLRFEEW 518
             D   L  E++
Sbjct: 343 TPDELFLSPEQF 354



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 76/195 (38%), Gaps = 17/195 (8%)

Query: 525  TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
             + ++ATP    L    +GI    +I   P   +     +R        + + +    ++
Sbjct: 840  VLTLTATPIPRTLAMSLEGIRDFSVIATAPQKRLAIRTFVRKETG--GTIREAMLRELKR 897

Query: 582  GLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            G ++      V T     + L E + E  I V   H ++   E   ++RD    +F+VL+
Sbjct: 898  GGQVYFLHNEVGTIENRRQMLAELVPEARIEVA--HGQMPERELERVMRDFHQQRFNVLL 955

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           ++I
Sbjct: 956  CTTIIETGIDVPTANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLIPDEEAI 1011

Query: 698  QLAIDETTRRREKQL 712
                D T R    Q+
Sbjct: 1012 TK--DATKRLEAIQM 1024



 Score = 38.5 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 147 YHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPN 202
           +  + DQ AAI  +++  I  +   +L+ G  G GKT      A V  +  R   V+ P 
Sbjct: 688 FEETPDQQAAIHAVVQDLIAPKPMDRLVCGDVGFGKTEVALRAAYVAASTGRQVAVLTPT 747

Query: 203 KILAA---QLYSEFKNFFPHNAVEY 224
            +LA    Q +++  + FP N  E 
Sbjct: 748 TLLAEQHFQTFNDRFSSFPLNVAEL 772


>gi|148980820|ref|ZP_01816230.1| transcription-repair coupling factor [Vibrionales bacterium SWAT-3]
 gi|145961055|gb|EDK26376.1| transcription-repair coupling factor [Vibrionales bacterium SWAT-3]
          Length = 1153

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 116/299 (38%), Gaps = 38/299 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +AK+ E      ++  P+  +A +L SE    F  + V  F          
Sbjct: 24  LVGSSLALAIAKLAEQHNSHTVLAVPDPQIALKLQSEI-EQFTASEVALF---------- 72

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS-QMI 294
              P  +T      S +++I   R +   +L    D I +  +S +    S   +  Q  
Sbjct: 73  ---PDWETLPYDSFSPHQEIISDRIARLYALPTLKDGITIVPISTLLQRQSPRDFLLQHT 129

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K GD    ++L   L K  Y+  D     G +   G  +++FP   +D  +R+  F 
Sbjct: 130 LMVKTGDLYSLEKLRLQLEKSGYRYVDQVFGPGEYASRGSILDLFPMGSKD-PYRIDFFD 188

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P   + I ++  I++     +    PT  TA++        R+   ++  
Sbjct: 189 DEIDTIRTFDPENQRSIEDISEIRLLPAHEF----PTSETAIEDF------RIRWRQQFD 238

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
              E + +  +++              IE +          +   TLF+Y+ +++ L V
Sbjct: 239 ARREPESVYMQVSK-------GTWPAGIEYWQPLFF-----DHTETLFDYVADEAQLLV 285



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 10/184 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q +D  V + +     +G
Sbjct: 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSDDAVVREAVLREIMRG 812

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E   E L +     R    H +++  E   I+ D    +F++LV   
Sbjct: 813 GQVYFLHNQVDTIEKTAESLQKLIPEARVTVAHGQMRERELERIMNDFYHQRFNLLVCTT 872

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL- 699
           ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K++   
Sbjct: 873 IIETGIDVPTANTILMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAMTKD 928

Query: 700 AIDE 703
           AI  
Sbjct: 929 AIKR 932


>gi|145629319|ref|ZP_01785118.1| transcription-repair coupling factor [Haemophilus influenzae
           22.1-21]
 gi|144978822|gb|EDJ88545.1| transcription-repair coupling factor [Haemophilus influenzae
           22.1-21]
          Length = 765

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 121/335 (36%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V        ++++ E  Q   +V+ P+   A +L          N  
Sbjct: 10  IPTQPNDHKILGNVLQGADALAISEIAEQNQNLTVVVTPDTRSAVRLSRILSELSSQNVC 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
            +              P  +T      S +++I   R SA   L      I +  +S + 
Sbjct: 70  LF--------------PDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLM 115

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K GD +   ++   L    Y+  +  +  G + V G  +++FP 
Sbjct: 116 QRLCPPQYLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  + +I +     +    PT +  +++ + 
Sbjct: 176 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLDEITSINLLPAHEF----PTDDKGIEFFRA 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +              TL
Sbjct: 231 QFRETFGEIRRDPEHIYQQ------------ISKGTLISGIEYWQPLFFSEM-----ATL 273

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+Y+PE +L    E++ T  Q    Y+    R   
Sbjct: 274 FDYLPEQTLFVDMENNQT--QGERFYQDAKQRYEQ 306


>gi|323492540|ref|ZP_08097688.1| transcription-repair coupling factor [Vibrio brasiliensis LMG
           20546]
 gi|323313327|gb|EGA66443.1| transcription-repair coupling factor [Vibrio brasiliensis LMG
           20546]
          Length = 1153

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 118/308 (38%), Gaps = 39/308 (12%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           + +K Q +  + G+     +A++ +      ++  P+   A +L  E + F  H      
Sbjct: 15  AGDKKQ-IGNLRGASLAIAIAELADRHGSHTLLAVPDPQTALKLQQEIEQFTGHEV---- 69

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
                     A  P  +T      S +++I   R S    L  +   I +  VS +    
Sbjct: 70  ----------ALFPDWETLPYDSFSPHQEIISDRISRLYQLPTQTSGITIVPVSTLLQRQ 119

Query: 286 SVESYS-QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
           S   +  Q  + +K+GD    ++L   L K  Y+  D     G +   G  +++FP    
Sbjct: 120 SPRDFLLQHTLMVKVGDLFSLEKLRLQLEKSGYRNVDQVFGPGEYASRGSILDLFPMGSS 179

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           D  +R+  F ++I+ I  F P   + I + + I++     +    PT  +A++  +   +
Sbjct: 180 D-PYRIDFFDDEIDTIRTFDPENQRSIEDTKEIRLLPAHEF----PTSESAIEDFRIRWR 234

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            R           EA+R  + +      +        IE +          E   TLF Y
Sbjct: 235 QR----------FEARREPESVYM---QVSKGTWPAGIEYWQPLFF-----EHTETLFNY 276

Query: 465 IPEDSLLF 472
           IP+DSLL 
Sbjct: 277 IPDDSLLL 284



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 14/186 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q +D  V + +     +G
Sbjct: 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQRDDAVVREAVLREIMRG 812

Query: 583 LRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++          E    DL + + E  + V   H +++  E   I+ D    +F++LV 
Sbjct: 813 GQVYFLHNQVETIEKVAADLEKLVPEARVTVA--HGQMRERELERIMNDFYHQRFNLLVC 870

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K++ 
Sbjct: 871 TTIIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAMT 926

Query: 699 L-AIDE 703
             AI  
Sbjct: 927 KDAIKR 932


>gi|329123308|ref|ZP_08251874.1| transcription-repair coupling factor [Haemophilus aegyptius ATCC
           11116]
 gi|327471404|gb|EGF16854.1| transcription-repair coupling factor [Haemophilus aegyptius ATCC
           11116]
          Length = 1160

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 121/335 (36%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V        ++++ E  Q   +V+ P+   A +L          N  
Sbjct: 24  IPTQPNDHKILGNVLQGADALAISEIAEQNQNLTVVVTPDTRSAVRLSRILSELSSQNVC 83

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
            +              P  +T      S +++I   R SA   L      I +  +S + 
Sbjct: 84  LF--------------PDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLM 129

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K GD +   ++   L    Y+  +  +  G + V G  +++FP 
Sbjct: 130 QRLCPPQYLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPM 189

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  + +I +     +    PT +  +++ + 
Sbjct: 190 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLDEINSINLLPAHEF----PTDDKGIEFFRA 244

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +              TL
Sbjct: 245 QFRETFGEIRRDPEHIYQQ------------ISKGTLISGIEYWQPLFFSEM-----ATL 287

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+Y+PE +L    E++ T  Q    Y+    R   
Sbjct: 288 FDYLPEQTLFVDMENNQT--QGERFYQDAKQRYEQ 320



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 12/187 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +D+   + I     +G
Sbjct: 767 ILTLTATPIPRTLNMAMNGIRDLSIIST-PPARRLSIKTFVRQNDDLVVREAILREILRG 825

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++      ++ D    +++VLV   
Sbjct: 826 GQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMRERALERVMSDFYHQRYNVLVCST 885

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +   
Sbjct: 886 IIETGIDVPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKMMTK- 940

Query: 701 IDETTRR 707
             +  RR
Sbjct: 941 --DAERR 945


>gi|289568998|ref|ZP_06449225.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis T17]
 gi|289542752|gb|EFD46400.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis T17]
          Length = 697

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 91/518 (17%), Positives = 173/518 (33%), Gaps = 60/518 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             QL++    R     L+    S +    + +      P +V+      A  L +E +  
Sbjct: 26  FQQLMQRAGGRPDELTLI-APASARLLVASALARQ--GPLLVVTATGREADDLAAELRGV 82

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           F    V    S+ +    E   P  DT   +  +    + R+ H    + L     +VV+
Sbjct: 83  FGD-TVALLPSW-ETLPHERLSPGVDTVGTRLMA----LRRLAHPD-DAQLGPPLGVVVT 135

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           SV  +    + +      + L +GD      +++ LV+  Y R D+   RG F V G  +
Sbjct: 136 SVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGIL 195

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IF +   +   RV  +G++I E+  F     + I  ++   + A +             
Sbjct: 196 DIF-APTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFA-----------CR 243

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           + +  E                   +    +  L  L    +   +E     L      +
Sbjct: 244 ELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWS----D 299

Query: 457 PPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYG-FRLPSCMDNRP 512
               L + +P+ + + V +          +    R       ++A  G     + +D   
Sbjct: 300 GHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQ 359

Query: 513 LRFEEWNCLRPTTIVVSATPGS--WELEQ-CQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           L    +  L       +A  G   W L Q      +E  +R           R  +  ++
Sbjct: 360 LGGSGFVEL-DQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSA------RGHQRDID 412

Query: 570 DVYDEINLAAQQ-GLRILL---TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +++  +       G   L+   T    R+ E L+E             S+      ++  
Sbjct: 413 EIFAMLRAHIATGGYAALVAPGTGTAHRVVERLSE-------------SDTPAGM-LDPG 458

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +  + G   VL G   LR+G+ IP   LV I + D  G
Sbjct: 459 QAPKPGVVGVLQGP--LRDGVIIPGANLVVITETDLTG 494


>gi|330445693|ref|ZP_08309345.1| transcription-repair coupling factor [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489884|dbj|GAA03842.1| transcription-repair coupling factor [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 1143

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 117/295 (39%), Gaps = 36/295 (12%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G+    + A++  +   P + + P+   A +L  E   F     V  F  + +    + +
Sbjct: 16  GAALALSFAEIAASHNGPILAVVPDTQSALKLQPEISQFC-DVDVNVFPDW-ETLPYDNF 73

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
            P  D        I+E++ R+     +   +++  I+V   + +  +   E   Q  + +
Sbjct: 74  SPHQDI-------ISERLARL----YKMPTQKSGIILVPISTLLQRLTPSEFIHQHALMV 122

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           K  D +  ++L   L    Y+  D  +  G +   G  +++FP   +   +R+  F +++
Sbjct: 123 KKDDRMSLEKLRLQLEVSGYRHVDQVMEHGEYASRGSLLDLFPMGSQS-PYRIDFFDDEV 181

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           + I +F P   +    +++I +     +    PT + A++  +   + R     +   + 
Sbjct: 182 DSIRQFDPDNQRSTGEIDSINLLPAHEF----PTDDIAVENFRMRWRERFEARREPESI- 236

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             Q++ +R                IE +          +   TLF+Y+P+++LL 
Sbjct: 237 -YQQVSKRT-----------WPAGIEYWQPLFF-----DKTETLFDYLPDNALLV 274



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 90/245 (36%), Gaps = 15/245 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q ED  + + +     +G
Sbjct: 747 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSEDAVIREAVLREISRG 805

Query: 583 LRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++      V T  +  EDL + + E   RV + H +++  E  +I+ D    +F+VLV 
Sbjct: 806 GQVYFLHNEVDTIEKTTEDLAKLIPEA--RVTFAHGQMRERELEKIMGDFYHQRFNVLVC 863

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K + 
Sbjct: 864 TTIIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKRMT 919

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
              D   R        +        +   +I    + +  E +        +  + + ++
Sbjct: 920 K--DAVKRLEAISSLEDLGAGFTLATHDLEIRGAGELLGDEQSGQIQSVGFSLFMEMLEQ 977

Query: 759 KGKAH 763
             +A 
Sbjct: 978 AVEAL 982



 Score = 37.4 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 79/239 (33%), Gaps = 45/239 (18%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A     ++ + V T    ++  E+  +      IRV  +       E+
Sbjct: 629 GKTEVAMRAAFVAVDNNKQVTVLVPTTLLAQQHFENFRDRFANTPIRVEVLSRFKTAKEQ 688

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            +I+ D+  GK D+L+G + LL   ++  + GL+ + +  + G  + +        +A R
Sbjct: 689 KQILADVEEGKVDILIGTHKLLNSSVNYHDLGLLIVDEEHRFGVRQKEKI------KAIR 742

Query: 681 NVNSKVILYADTITKSIQLAID----------ETTRRREKQLEHNKKHNINPQSVKEK-- 728
                + L A  I +++ +A+              RR               ++   +  
Sbjct: 743 ANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAI------------KTFVRQSE 790

Query: 729 ---IMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR-----KQMHLAADNLN 779
              I E +   +        +  +   +  + +     +   R      QM      L 
Sbjct: 791 DAVIREAVLREISRGGQVYFLHNEVDTIEKTTEDLAKLIPEARVTFAHGQMRE--RELE 847


>gi|319776143|ref|YP_004138631.1| transcription-repair coupling factor [Haemophilus influenzae F3047]
 gi|317450734|emb|CBY86954.1| transcription-repair coupling factor [Haemophilus influenzae F3047]
          Length = 1146

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 121/335 (36%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V        ++++ E  Q   +V+ P+   A +L          N  
Sbjct: 10  IPTQPNDHKILGNVLQGADALAISEIAEQNQNLTVVVTPDTRSAVRLSRILSELSSQNVC 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
            +              P  +T      S +++I   R SA   L      I +  +S + 
Sbjct: 70  LF--------------PDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLM 115

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K GD +   ++   L    Y+  +  +  G + V G  +++FP 
Sbjct: 116 QRLCPPQYLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  + +I +     +    PT +  +++ + 
Sbjct: 176 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLDEINSINLLPAHEF----PTDDKGIEFFRA 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +              TL
Sbjct: 231 QFRETFGEIRRDPEHIYQQ------------ISKGTLISGIEYWQPLFFSEM-----ATL 273

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+Y+PE +L    E++ T  Q    Y+    R   
Sbjct: 274 FDYLPEQTLFVDMENNQT--QGERFYQDAKQRYEQ 306



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 12/187 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +D+   + I     +G
Sbjct: 753 ILTLTATPIPRTLNMAMNGIRDLSIIST-PPARRLSIKTFVRQNDDLVVREAILREILRG 811

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++  E   ++ D    +++VLV   
Sbjct: 812 GQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCST 871

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +   
Sbjct: 872 IIETGIDVPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKMMTK- 926

Query: 701 IDETTRR 707
             +  RR
Sbjct: 927 --DAERR 931


>gi|330999600|ref|ZP_08323311.1| transcription-repair coupling factor [Parasutterella
           excrementihominis YIT 11859]
 gi|329574453|gb|EGG56023.1| transcription-repair coupling factor [Parasutterella
           excrementihominis YIT 11859]
          Length = 1157

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/437 (13%), Positives = 152/437 (34%), Gaps = 50/437 (11%)

Query: 176 VTGSGKTFTMAK---VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
             GS    ++A+    ++   +   V+  +     +L  E   F P   +  F  + +  
Sbjct: 30  PAGSALAMSIAQNAVQLKKQNKLLTVICADPSDVIRLQDEVTWFDPSLKLTVFPDW-ETL 88

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
             +   P  D   E+  ++   ++R +        +  D ++VS+ +    +        
Sbjct: 89  PYDVLSPHADLVGERLQTLYLLLNRQKRQ------DPVDVLIVSASTATQRLAPRNYIGS 142

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
                + GD ++  +L + LV + Y+     +  G F   G  +++FP       +R+  
Sbjct: 143 TTFFFRKGDRIDPTDLRAELVARGYEHVSQVVAPGEFASRGGLLDLFPMGAA-KPYRLDF 201

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           F ++++EI  F P   + +  V+ I++     +   +   +          + R      
Sbjct: 202 FDDELDEIRVFDPDNQRSVEKVDEIRLLPAHEFPMGKEARSAFCS------RWRETFEGD 255

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             ++              + +E   +   +ENY          +   TLF+YI  D+ L 
Sbjct: 256 PSKVT-----------LYKDIENGIAAPGVENYLPLFF-----DETETLFDYIGSDASLI 299

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           +      +  ++             A++   L +  +   L F+      P    ++   
Sbjct: 300 L------LGDVNSAIEHFDKETEQRAKF---LRADGERPILDFKRLYLSAPQFFELA--- 347

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
           G++     +  + ++           +E R     +E +    +L + +  ++L+   + 
Sbjct: 348 GNY----ARLSLTDKETATPNFPSVAIE-RRKDDPLEGLKAYKDLCSARSCKLLVMANSA 402

Query: 593 RMAEDLTEYLYERNIRV 609
              E +++   E  ++ 
Sbjct: 403 GRLETISDVFKENGLKA 419



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 79/240 (32%), Gaps = 34/240 (14%)

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLR-- 522
             +  L+ +DE H    +     +        L      +P  +        +++ +   
Sbjct: 735 FKDLGLVVIDEEHRFGVRQKEQLKSLRSEVDILTLTATPIPRTLSMSLEGIRDFSVIATA 794

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
           P   +   T    E      +I E ++R                QV  +++E+       
Sbjct: 795 PQKRLAIKTFVQRE---SDSLIREAVLRELKR----------GGQVYFLHNEVETIENAR 841

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           +R             L + L E  I V   H ++   E   ++RD    + +VL+   ++
Sbjct: 842 MR-------------LDQLLPEARIGVA--HGQMNERELERVMRDFYAQRTNVLLCTTII 886

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
             G+DIP    + +  ADK G  +    L Q  GR  R+ +            ++    +
Sbjct: 887 ETGIDIPNANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPGEGAMTKNAE 942


>gi|54026849|ref|YP_121091.1| putative transcription-repair coupling factor [Nocardia farcinica
           IFM 10152]
 gi|54018357|dbj|BAD59727.1| putative transcription-repair coupling factor [Nocardia farcinica
           IFM 10152]
          Length = 1205

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 87/496 (17%), Positives = 168/496 (33%), Gaps = 57/496 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
              + ++F  A V     RP +V+      A  L  E        +V  F S+ +    E
Sbjct: 37  APAAARSFVAATVAGK--RPVVVVTATGREADDLTVELTEILGD-SVAQFPSW-ETLPHE 92

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
              P  DT   + +     + R+ H     +      +VV++V  +    +        +
Sbjct: 93  RLSPSADTVGRRLAV----LRRLAHPD-DPVFPVPLRVVVTTVRSLMQPMAAGLGDIEPI 147

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L+ G  ++  +LL+ LV+  Y R D+   RG F V G  +++FP    D   RV  +G+
Sbjct: 148 VLREGAELDFDDLLTRLVEFAYTRVDMVGKRGEFAVRGGILDLFPP-TADHPVRVEFWGD 206

Query: 356 DIEEISEFYPLTGQKIR--NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
           ++ ++  F     + +    ++T+        +   P    A +               +
Sbjct: 207 EVTQVRAFAVADQRSLPEIEIDTVVATPCRELLLTAPVRERAAQV--------AAANAAD 258

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF-EYIPEDSLLF 472
             L+E           L+ L      + +E     L    PGE   TL  E +   + + 
Sbjct: 259 AALVEM----------LDKLAEGIPVEGMEALLPVL---QPGE--LTLLTEQLAAGTHVL 303

Query: 473 VDESHVTIPQISGMYR---GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           + +      + + + R          T A +G   P   +   L    +  L P     +
Sbjct: 304 LCDPEKIRTRAADLVRTGAEFLEASWTAASFGADAPLGGNGLDLAASSYRAL-PQIREDA 362

Query: 530 ATPGS--WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
              G   W L         +++ P          R +   V  ++  +      G R ++
Sbjct: 363 DRHGLAWWTLSPLASGDPAEVVLPLHQAPTA---RGSDELVATIFASLRAHVTTGGRAVV 419

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
            V     A+ + E L +  +    + +  +             G   VL G   L +G+ 
Sbjct: 420 VVAGHGTAQRVLERLADAEVPATALTAGAEPAP----------GVVGVLCGT--LHDGVV 467

Query: 648 IPECGLVAILDADKEG 663
             +  LV + ++D  G
Sbjct: 468 FADAALVVVAESDLTG 483



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + ++ PP E     T V     + V   I    
Sbjct: 786 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERHPVLTYVGAYNDKQVTAAIRREL 841

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +   + + +     R +  H ++        ++     ++DVLV
Sbjct: 842 LRDGQVFYVHNRVSSIDKAAKRIRDLVPEARVVVAHGQMNEDTLERTVQGFWQREYDVLV 901

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +     K  
Sbjct: 902 CTTIIETGLDISNANTLIVERADTLGLSQ----LHQLRGRVGRSRERGYAYFLYPPEKP- 956

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N    
Sbjct: 957 ---LTETAYDRLATIAQNSDLG 975


>gi|309972993|gb|ADO96194.1| Transcription-repair coupling factor [Haemophilus influenzae R2846]
          Length = 1146

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/335 (17%), Positives = 124/335 (37%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V        ++++ E  Q   +V+ P+   A +L          N  
Sbjct: 10  IPTQPNDHKILGNVLPGADALAISEIAEQNQSLTVVVTPDTRSAVRLSRVLSELSSQNVC 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
            +              P  +T      S +++I   R SA   L      I +  +S + 
Sbjct: 70  VF--------------PDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLM 115

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K GD +   ++   L    Y+  +  +  G + V G  +++FP 
Sbjct: 116 QRLCPPQYLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  + +I +     +    PT +  +++ + 
Sbjct: 176 -GSVVPFRLDFFDDEIDSIRTFDVDTQRTLDEINSINLLPAHEF----PTDDKGIEFFRA 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ +     E + + Q+I+              IE +              TL
Sbjct: 231 QFRETFGEIRR-----EPEHIYQQISK-------GTLISGIEYWQPLFFAEM-----ATL 273

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+Y+PE +L    E++ T  Q    Y+    R   
Sbjct: 274 FDYLPEQTLFVDMENNQT--QGERFYQDAKQRYEQ 306



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 12/187 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +D+   + I     +G
Sbjct: 753 ILTLTATPIPRTLNMAMNGIRDLSIIST-PPARRLSIKTFVRQNDDLVVREAILREILRG 811

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++  E   ++ D    +++VLV   
Sbjct: 812 GQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCST 871

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +   
Sbjct: 872 IIETGIDVPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKMMTK- 926

Query: 701 IDETTRR 707
             +  RR
Sbjct: 927 --DAERR 931


>gi|297538863|ref|YP_003674632.1| transcription-repair coupling factor [Methylotenera sp. 301]
 gi|297258210|gb|ADI30055.1| transcription-repair coupling factor [Methylotenera sp. 301]
          Length = 1142

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/420 (16%), Positives = 137/420 (32%), Gaps = 64/420 (15%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            +P +++  N   A +L  E   F P   V               +P  +T    + S +
Sbjct: 42  TKPLVIITANAFDAQRLLEEIPYFAPSLTV-------------NLLPDWETLPYDQFSPH 88

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
             +   R +    + + +  +++  +S  +  +      S     LK G  ++ + L   
Sbjct: 89  PDLISDRLTTLYQISQNSCDVIIVPLSTALIRLSPKAYLSANTFMLKKGQILDTEALRRQ 148

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
             +  Y      I  G F V G  +++FP     + +R+ +F N+IE I  F   T + +
Sbjct: 149 CAEAGYHHVSQVISHGEFSVRGGLVDLFPMGSA-LPYRIDLFDNEIETIRTFDVDTQRSL 207

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELK---MRLIELEKEGRLLEAQRLEQRITY 428
             V  I++     +      +       +E  +    R    +   + + +         
Sbjct: 208 YPVPEIRLLPAREFPLDEAGVALFRGQFREAFEGDPQRAKIYKDVSKGIAS--------- 258

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
                        IE Y          E   T  +Y+P D +L +        Q    +R
Sbjct: 259 -----------GGIEWYLPLFF-----EQTATFLDYLPTDCVLCLHGDLDQSAQ--QFWR 300

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
               R  TLA    R     +   ++ E++         +S    S              
Sbjct: 301 EAQSRYRTLAHDAERPLLTPETLLIKTEDFFSTSHQFTRISLNTNS-------------- 346

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
            + TGL    +E R A   +  +   I+  +    RIL+   +    E +++   E  I+
Sbjct: 347 -KTTGLPALDIE-RRAEKPLHKLQSYISDFSG---RILIAAESLGRRETISQLFAEHGIQ 401



 Score = 47.0 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 65/164 (39%), Gaps = 11/164 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      + E  II         ++          + + +    ++G 
Sbjct: 751 ILTLTATPIPRTLSMAMEGLREFSIITTPPQKRLSIKTFHTDYSEGIIREAVMREFKRGG 810

Query: 584 RILLT---VLTKR-MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T   M E L   + +  I V   H +++  E   ++RD    ++++L+  
Sbjct: 811 QVYFLHNEVDTIHSMREKLERIVPDARIAVA--HGQLRERELEHVMRDFYNQRYNLLLCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            ++  G+D+P    + +  AD  G  +    + Q  GR  R+ +
Sbjct: 869 TIIETGIDVPTANTIILNKADMFGLAQ----MHQLRGRVGRSHH 908



 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 14/135 (10%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           ++ ++ + + +  +   L  L        + G  +T     S++++      F     + 
Sbjct: 551 EKAKKKALKQIRDTAAELLNLYAQRAS--RRGHAFT----LSLHDYETFCEGF----PFE 600

Query: 149 PSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKI 204
            + DQ  AI  ++K + S     +L+ G  G GKT      A V     R   V+ P  +
Sbjct: 601 ETPDQLEAIENVIKDMQSGRPMDRLVCGDVGFGKTEVALRAAFVAVMGGRQVAVLVPTTL 660

Query: 205 LAAQLYSEFKNFFPH 219
           LA Q ++ FK+ F  
Sbjct: 661 LAEQHFNNFKDRFAE 675


>gi|146298962|ref|YP_001193553.1| transcription-repair coupling factor [Flavobacterium johnsoniae
           UW101]
 gi|146153380|gb|ABQ04234.1| transcription-repair coupling factor [Flavobacterium johnsoniae
           UW101]
          Length = 1121

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 96/251 (38%), Gaps = 18/251 (7%)

Query: 154 PAAIAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           P A  Q+  G+    ++++ + G+ GS  +F +  V +  + P +++  NK  AA   ++
Sbjct: 14  PKA-QQIASGLLEGNQIKMNISGLLGSAVSFIIRSVFKKTELPFLIVLDNKEEAAYYLND 72

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND- 271
            +       V ++   +                 +    +     +R      +  R   
Sbjct: 73  LEQMIGEQDVLFYPVSFRR-------------PYQVDETDNANVLLRAEVLNRINSRKKP 119

Query: 272 -CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             IV    +    + + +   +  +++ + D +    +   L + ++KR D     G F 
Sbjct: 120 AVIVTYPEALFEKVVTRQQLDKNTLKVSLNDKISIDFINEVLFEYEFKRVDFITEPGEFS 179

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V G  +++F S   D  +R+  FGN+++ I  F   T   +   + I I  N      + 
Sbjct: 180 VRGGIVDVF-SFSNDHPYRIEFFGNEVDSIRTFDVETQLSVETHKKITIIPNVENKIFQE 238

Query: 391 TLNTAMKYIKE 401
              + + YI E
Sbjct: 239 NRESFLDYIAE 249



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 70/190 (36%), Gaps = 12/190 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +  +I        P+E        E + D I+   Q+  
Sbjct: 712 TLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIETNVVGFNEEIIRDAISYEIQRNG 771

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   +       R    H ++   +  E++     G FDVLV   +
Sbjct: 772 QVFFINNRIENIKEVAGMIQRLVPNARVGIGHGQMDGAKLEELMLGFMNGDFDVLVATTI 831

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+P    + I +A+  G     + L Q  GR  R+       +      S+    
Sbjct: 832 IESGLDVPNANTIFINNANNFGL----SDLHQMRGRVGRSNKKAFCYFICPPYSSM---- 883

Query: 702 DETTRRREKQ 711
            E  R+R  Q
Sbjct: 884 TEDARKR-IQ 892


>gi|239999138|ref|ZP_04719062.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae 35/02]
 gi|268594974|ref|ZP_06129141.1| transcription-repair coupling factor [Neisseria gonorrhoeae 35/02]
 gi|268548363|gb|EEZ43781.1| transcription-repair coupling factor [Neisseria gonorrhoeae 35/02]
 gi|317164430|gb|ADV07971.1| putative transcription-repair coupling factor [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 1234

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 142/421 (33%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R   V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKAVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E   +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-TPYRIDLFDDEIDGIKTFDTDTQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWND 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q ++    + +       RILL   +    E +  +L +  ++ 
Sbjct: 340 AHSLPDLAV-----NRQSDEPLQALKDFQTAFDGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 837  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 893

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 894  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 951

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 952  LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1000

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1001 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1037

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1038 GAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDL 1070


>gi|229494982|ref|ZP_04388731.1| transcription-repair coupling factor [Rhodococcus erythropolis
           SK121]
 gi|229318076|gb|EEN83948.1| transcription-repair coupling factor [Rhodococcus erythropolis
           SK121]
          Length = 1208

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/316 (17%), Positives = 109/316 (34%), Gaps = 36/316 (11%)

Query: 180 GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239
            + F  A +      P +++      A  L SE         V  F S+ +    E   P
Sbjct: 44  ARPFIAAALAART--PVLLVTATGREADDLTSELTEMLGG-GVAQFPSW-ETLPHERLSP 99

Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
             DT   +     E + R+      S       ++V++V  +    +        + L++
Sbjct: 100 SADTVGRRV----EVLRRLARPDDAS-YGSPLRVIVTTVRSLVQPMAPGLGEIEPITLRV 154

Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359
           G  ++   +L  LV+  Y R D+   RG F V G  +++F S   D   R+  +G+++ E
Sbjct: 155 GTEIDFDSVLVRLVEMAYSRVDMVGKRGEFAVRGGILDLF-SPTADHPVRIEFWGDEVSE 213

Query: 360 ISEFYPLTGQKIR--NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           +  F     + +   +V+++        +      + A     E                
Sbjct: 214 LRYFSVADQRSLADVDVDSVIAPPCRELILTADVRDRAAALAAE---------------- 257

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF-EYIPEDSLLFVDES 476
                 Q     +EML+   +   +E     L    PGE    L  + +PE + + + + 
Sbjct: 258 -----NQADASLVEMLDKISAGIPVEGMEALLPVLKPGE--LQLLSDVLPEGAHILLCDP 310

Query: 477 HVTIPQISGMYRGDFH 492
                + + + R    
Sbjct: 311 EKVRTRATDLVRTGQE 326



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + ++ PP E     T V     + V   I    
Sbjct: 798 VLTMSATPIPRTLEMSMAGIREM----STILTPPEERHPILTYVGAYADKQVAAAIRREL 853

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +   + + E     R +  H ++      + ++      FDVLV
Sbjct: 854 LRDGQVFYVHNRVSSIDKAAKKIRELVPEARVVVAHGQMNEDTLEKTVQGFWERDFDVLV 913

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +     K  
Sbjct: 914 CTTIIETGLDISNANTLIVERADSLGLSQ----LHQLRGRVGRSRERGYAYFLYPAEKP- 968

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N    
Sbjct: 969 ---LTETAYDRLATISQNSDLG 987



 Score = 44.3 bits (103), Expect = 0.090,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 63/155 (40%), Gaps = 15/155 (9%)

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           +        V+S      E       +   +I   G     + +R+A   V+D       
Sbjct: 646 FTETIDQLTVISEVKADME---KPVPMDRVVIGDVGYGKTEIAVRAAFKAVQD------- 695

Query: 578 AAQQGLRILL--TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              + + +L+  T+L ++  +  TE +    ++VR +       +  EII  +  G+ D+
Sbjct: 696 --GKQVAVLVPTTLLAQQHLQTFTERMASFPVKVRGLSRFTDAKDSKEIIAGMAEGEIDI 753

Query: 636 LVGIN-LLREGLDIPECGLVAILDADKEGFLRSKT 669
           +VG + LL+ G+   + GLV + +  + G    + 
Sbjct: 754 VVGTHRLLQTGIRWKDLGLVIVDEEQRFGVEHKEH 788


>gi|89889977|ref|ZP_01201488.1| transcription-repair coupling factor [Flavobacteria bacterium
           BBFL7]
 gi|89518250|gb|EAS20906.1| transcription-repair coupling factor [Flavobacteria bacterium
           BBFL7]
          Length = 1112

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 104/248 (41%), Gaps = 14/248 (5%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q +    L + +   +    L G+ GS  T   + + + +++P +++A +K  AA + ++
Sbjct: 12  QASQTQSLREVVSQSQGYTHLSGLQGSAFTIAASSIFDEVEKPFMIIANDKEQAAYMLND 71

Query: 213 FKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           F+     + V ++  SY   YQ           IEK  + N  +     +   S  ++  
Sbjct: 72  FEKMLGDDRVLFYPGSYRRPYQ-----------IEKTDNANVLLRAEVLNRINS-RKKPA 119

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            IV    +    + + +   +  +++ IGD +        L + ++KR D     G F V
Sbjct: 120 VIVTYPNALFEKVVTRKELEKNTLKIAIGDQISIDFANEVLFEYEFKRVDFVTEPGEFSV 179

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  +++F S   D  +R+  FGN+I+ I  F   T      ++ I I  N  +      
Sbjct: 180 RGGILDVF-SFSHDEPYRIEFFGNEIDTIRVFDVDTQLSKEQIKKISIIPNVEHKKLEEN 238

Query: 392 LNTAMKYI 399
             + ++Y+
Sbjct: 239 RESFLQYL 246



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 11/200 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +  +I+       P+E R  R   E + D ++    +G 
Sbjct: 700 TLTLTATPIPRTLQFSLMAARDLSVIKTAPPNRHPIESRVIRFSEETIRDAVSYEISRGG 759

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   +       R    H ++   +  E++     G FDVLV   +
Sbjct: 760 QVFFVHNRIENIKEVAGMIQRSVPDARVGIGHGQMDGKKLEELMLSFMNGDFDVLVATTI 819

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA----DTITKSI 697
           +  GLD+P    + I +A+  G     + L Q  GR  R+       +     D +T   
Sbjct: 820 IESGLDVPNANTIFINNANNFGL----SDLHQMRGRVGRSNKKAFCYFITPPYDMMTDDA 875

Query: 698 QLAIDETTRRREKQLEHNKK 717
           +  I       E     N  
Sbjct: 876 RKRIQAVETFSELGSGFNIA 895


>gi|290959824|ref|YP_003491006.1| transcriptional-repair coupling factor [Streptomyces scabiei 87.22]
 gi|260649350|emb|CBG72465.1| putative transcriptional-repair coupling factor [Streptomyces
           scabiei 87.22]
          Length = 1177

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 113/290 (38%), Gaps = 21/290 (7%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           D P  +A+ ++      +  + L    + + F +A +     RP + +      A  L +
Sbjct: 13  DAP--LAEAIRAASDGHRSHIDLVGPPAARPFAVAALARDAGRPVLAVTATGREAEDLAA 70

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
             ++  P + V  + ++ +    E   PR+DT   + +     + R+ H           
Sbjct: 71  ALRSLLPPDGVVEYPAW-ETLPHERLSPRSDTVGRRLAV----LRRLTHPRPDDPETGPV 125

Query: 272 CIVVSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
            +VV+ V  +      G+G +E  +     L+ G + +    + +L    Y R ++   R
Sbjct: 126 SVVVAPVRSVLQPQVKGLGDLEPVA-----LRTGGTADLNRTVEALAAAAYARVELVEKR 180

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHY 385
           G F V G  +++FP   E+   RV  +G+D+EEI  F     + +   E  +        
Sbjct: 181 GEFAVRGGILDVFPP-TEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCREL 239

Query: 386 VTPRPTLNTAMKYIKE--ELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           +        A    +   EL   L ++ +   +   + L   +  D+E+L
Sbjct: 240 LLTDDVRARARALAERHPELAELLDKIAEGIAVEGMESLAPVLVDDMELL 289



 Score = 39.3 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 65/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + +  PP E     T V     + +   I    
Sbjct: 777 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEEKQIGAAIRREL 832

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 833 LREGQVFYIHNRVESIDRAASRLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLV 892

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R        +     K  
Sbjct: 893 STTIVESGIDISNANTLIVERGDTFGLSQ----LHQLRGRVGRGRERGYAYFLYPPEKP- 947

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 948 ---LTETAHERLATIAQHTEMG 966


>gi|161503691|ref|YP_001570803.1| transcription-repair coupling factor [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865038|gb|ABX21661.1| hypothetical protein SARI_01775 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 1148

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 121/309 (39%), Gaps = 38/309 (12%)

Query: 165 HSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            + ++ QL  G +TG+     +A++ E    P +++AP+   A +L+ E + F   + + 
Sbjct: 12  KAGDQRQL--GELTGAACATLVAEIAERHVGPVVLIAPDMQNALRLHDEIRQFT--DQMV 67

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
             ++ ++    +++ P  +    + S++ +     R             ++V   + +  
Sbjct: 68  MNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQR 116

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +          + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   
Sbjct: 117 VCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + 
Sbjct: 177 E-QPYRLDFFDDEIDSLRLFDADTQRTLEEVEVINLLPAHEF----PTDKAAIELFRSQW 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           +             E +R  + I    + +        IE +          EP P LF 
Sbjct: 232 RDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFS 274

Query: 464 YIPEDSLLF 472
           Y P ++L+ 
Sbjct: 275 YFPANTLVV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREVLR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|294011405|ref|YP_003544865.1| transcription-repair coupling factor [Sphingobium japonicum UT26S]
 gi|292674735|dbj|BAI96253.1| transcription-repair coupling factor [Sphingobium japonicum UT26S]
          Length = 1154

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 88/504 (17%), Positives = 166/504 (32%), Gaps = 70/504 (13%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           I        L GV    + + +A +  A     + +AP++ L   +          +   
Sbjct: 7   ILKASAPMTLSGVPAGFQPWLLADIARAAPSRTLFVAPDEQLMRAVA---------DTAH 57

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI--VVSSVSCI 281
           YF    +       +P  D      +S + +    R +   +L  R      V+++++ +
Sbjct: 58  YFAPEIEI----VEIPAWDCLPYDRASPSLRTAAARLAGLYALQGRPQGPQLVLTTLNAL 113

Query: 282 -YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
                +     Q++ +L   + +    L   L    Y R D    RG F + G  +++FP
Sbjct: 114 TQRTLTPFRVRQLVAKLAPKERIAISRLADMLQANGYVRTDTVHDRGEFAIRGGIVDLFP 173

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
              E+   R+  FG++IE +  F P   +   +VE   +   S  +    T+        
Sbjct: 174 G-GEEQPLRLDFFGDEIETVRRFDPADQRTSGSVEGFTLLPASEALLDEETIKRF----- 227

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
                R    E  G       L Q ++            Q +E++          E    
Sbjct: 228 -----RGRYREIFGATATGDPLYQAVS-------DGRRLQGMEHWLPLFE-----ERLVP 270

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP-------L 513
           L +++ +DSL+ +D  H         +       A  A      P     RP       L
Sbjct: 271 LTDHLGDDSLILLD--HGVAGAAEARFEAIRDYHANRAAAKSSDPGAY--RPLEPRALYL 326

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
             EEW  L     + + TP   E E    +           VD P +    R Q  +VY+
Sbjct: 327 EAEEWAALARDWPMHATTP-FHEPESASVLDF--------AVDGPRDFAPERAQNANVYE 377

Query: 574 ----EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                I    +   ++++   +    E L+  L +  ++       +   +  +    + 
Sbjct: 378 AVGKHIAALQRTKKKVVIASYSGGARERLSGLLADHGLKR------IAAADSWQEALGIA 431

Query: 630 LGKFDVLVGINLLREGLDIPECGL 653
            G   VL  +  L  G   P+  +
Sbjct: 432 AGGSTVL-TVLPLDHGFTAPDVAV 454



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 70/192 (36%), Gaps = 15/192 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
             + ++ATP    L+     + E  +  T  VD       I      V  + + +     
Sbjct: 757 HVLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLAVRTYIMPWDGVV--IREALLREHY 814

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G +    V       ++ E+L      VR +  H ++   E  E +      ++DVL+ 
Sbjct: 815 RGGQSFFVVPRISDLTEIEEFLRTEVPEVRPVVAHGQMSATEVEERMSAFYDRRYDVLLS 874

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  GLDIP    + I  AD+ G  +    L Q  GR  R        +    T    
Sbjct: 875 TTIVESGLDIPSANTLIIHRADRFGLAQ----LYQLRGRVGRAKTRAYAYF----TTPAN 926

Query: 699 LAIDETTRRREK 710
             I ET  +R K
Sbjct: 927 RVITETAEKRLK 938


>gi|229846840|ref|ZP_04466947.1| transcription-repair coupling factor [Haemophilus influenzae
           7P49H1]
 gi|229810329|gb|EEP46048.1| transcription-repair coupling factor [Haemophilus influenzae
           7P49H1]
          Length = 1146

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 121/335 (36%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V        ++++ E  Q   +V+ P+   A +L          N  
Sbjct: 10  IPTQPNDHKILGNVLPGADALAISEISEQNQNLTVVVTPDTRSAVRLSRVLSELSSQNVC 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
            +              P  +T      S +++I   R SA   L      I +  +S + 
Sbjct: 70  LF--------------PDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLM 115

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K GD +   ++   L    Y+  +  +  G + V G  +++FP 
Sbjct: 116 QRLCPPQYLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  + +I +     +    PT +  +++ + 
Sbjct: 176 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLDEINSINLLPAHEF----PTDDKGIEFFRA 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +              TL
Sbjct: 231 QFRETFGEIRRDPEHIYQQ------------ISKGTLISGIEYWQPLFFAEM-----ATL 273

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+Y+PE +L    E++ T  Q    Y+    R   
Sbjct: 274 FDYLPEQTLFVDMENNQT--QGERFYQDAKQRYEQ 306



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 12/187 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +D+   + I     +G
Sbjct: 753 ILTLTATPIPRTLNMAMNGISDLSIIST-PPARRLSIKTFVRQNDDLVVREAILREILRG 811

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++  E   ++ D    +++VLV   
Sbjct: 812 GQVYYLHNDVASIENTAEKLTTLVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCST 871

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +   
Sbjct: 872 IIETGIDVPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKMMTK- 926

Query: 701 IDETTRR 707
             +  RR
Sbjct: 927 --DAERR 931


>gi|145634410|ref|ZP_01790120.1| transcription-repair coupling factor [Haemophilus influenzae
           PittAA]
 gi|145268390|gb|EDK08384.1| transcription-repair coupling factor [Haemophilus influenzae
           PittAA]
          Length = 1146

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 121/335 (36%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V        ++++ E  Q   +V+ P+   A +L          N  
Sbjct: 10  IPTQPNDHKILGNVLPGADALAISEIAEQNQNLTVVVTPDTRSAVRLSRVLSELSSQNVC 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
            +              P  +T      S +++I   R SA   L      I +  +S + 
Sbjct: 70  LF--------------PDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLM 115

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K GD +   ++   L    Y+  +  +  G + V G  +++FP 
Sbjct: 116 QRLCPPQYLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  + +I +     +    PT +  +++ + 
Sbjct: 176 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLDEISSINLLPAHEF----PTDDKGIEFFRA 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +              TL
Sbjct: 231 QFRETFGEIRRDPEHIYQQ------------ISKGTLISGIEYWQPLFFAEM-----ATL 273

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+Y+PE +L    E++ T  Q    Y+    R   
Sbjct: 274 FDYLPEQTLFVDMENNQT--QGERFYQDAKQRYEQ 306



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 12/187 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +D+   + I     +G
Sbjct: 753 ILTLTATPIPRTLNMAMNGIRDLSIIST-PPARRLSIKTFVRQNDDLVVREAILREILRG 811

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++  E   ++ D    +++VLV   
Sbjct: 812 GQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCST 871

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +   
Sbjct: 872 IIETGIDVPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYTYLLTPPPKMMTK- 926

Query: 701 IDETTRR 707
             +  RR
Sbjct: 927 --DAERR 931


>gi|238894149|ref|YP_002918883.1| transcription-repair coupling factor [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546465|dbj|BAH62816.1| transcription-repair ATP-dependent coupling factor [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 1148

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 118/310 (38%), Gaps = 38/310 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + + ++ QL  G +TG+     +A++ E    P +++AP+   A +L  E +  F  + V
Sbjct: 11  VKAGDQRQL--GELTGAACATLVAEMAERHNGPVVLVAPDMQNALRLNDEIRQ-FTDSMV 67

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                + +    +++ P  D    + +++ +     R             ++V   + + 
Sbjct: 68  MGLADW-ETLPYDSFSPHQDIISSRLATLYQLPTMQR-----------GVLIVPVSTLMQ 115

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +          + +K G  + +  L   L    Y+  D  +  G +   G  +++FP  
Sbjct: 116 RVCPHSFLHGHALVMKKGQRLSRDALRDQLEGAGYRHVDQVMEHGEYATRGALLDLFPM- 174

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
             D  +R+  F ++I+ +  F   + + +  V  I +     +    PT  TA++  + +
Sbjct: 175 GSDQPYRLDFFDDEIDSLRLFDVDSQRTLEEVAAINLLPAHEF----PTDQTAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            + R           E +R  + I    + +        IE +          EP P LF
Sbjct: 231 WRDR----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLF 273

Query: 463 EYIPEDSLLF 472
            Y P  +L+ 
Sbjct: 274 SYFPASTLIV 283



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDALV--VREAILRETLR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          +   + L E     R    H +++  E   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLFNDVENIQKAADKLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|317124068|ref|YP_004098180.1| transcription-repair coupling factor [Intrasporangium calvum DSM
           43043]
 gi|315588156|gb|ADU47453.1| transcription-repair coupling factor [Intrasporangium calvum DSM
           43043]
          Length = 1208

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 87/529 (16%), Positives = 167/529 (31%), Gaps = 87/529 (16%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQR-----------PAIVMAPNKILAAQLYSEFKN 215
                + +  +   + F +A + E M             P +V+      A  L +    
Sbjct: 23  GHARLVDVSASDGTRPFLVATLAERMAEAAGESAAGGPAPIVVVTATTREAEDLATALGA 82

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
           F   + +  F S+ +    E   PR+DT   + +     + R+ H            +VV
Sbjct: 83  FLSPDGIAVFPSW-ETLPHERLSPRSDTVGRRLAV----LRRVAHPDLADSAYGPLSVVV 137

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           + V  +    +      + V+L+ GD    ++++ +L    Y R D+   RG F V G  
Sbjct: 138 APVRALLQPVTKGLGELVPVRLEAGDERPLEDVVDALAAAAYTRTDLVERRGEFAVRGGI 197

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTPRPTLNT 394
           +++FP   E+   RV  +G+ +EE+  F     + +   E  +        +        
Sbjct: 198 LDVFPP-TEEHPVRVEFWGDTVEEVRWFKVADQRSLEIAEHGLWAPPCREVLLTPQVRAR 256

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A     + L  +L  +                   L  +    + + +E+ +  L     
Sbjct: 257 A-----KALAGQLPGVADM----------------LVKVAEGIAVEGMESLAPALVDGME 295

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP-- 512
                ++ + +P +SL+ + +      +I           A   E  +   +  ++ P  
Sbjct: 296 -----SVLDVLPVESLIVLADP----ERIRRRAHDLVATSAEFLEASWANAAAGNDVPVD 346

Query: 513 ------------LRFEEWNCLRPTTIVVSATP----GSWELEQCQGIIVEQIIRPTGLVD 556
                       L     + L       +ATP       E+E         I    G  D
Sbjct: 347 LQSLLGSASYWTLAEVRSHALTHDRPWWTATPFAADAGLEIEDDDVDARLSI----GTTD 402

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
                   R       D +   A QG  + +      +A+ + E L +  + VR +    
Sbjct: 403 SEA----FRGDTGRAVDHLRERATQGWTVAVVTEGPGLAKRVDEVLRDEEVPVRLLTRG- 457

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
                     DL+ G   V V    L  G       L  + + D  G  
Sbjct: 458 ----------DLQPGV--VAVCTAPLGRGFVHEAGRLEVLTETDLTGQP 494



 Score = 38.9 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 64/202 (31%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     T    PP E     T V     + +   I    
Sbjct: 797 VLSMSATPIPRTLEMAVTGIREMSTLAT----PPEERHPVLTFVGGYDEKQITAAIRREL 852

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     L E     R    H ++      +++ D    + DVLV
Sbjct: 853 LREGQVFFIHNKVSSIEKAALRLRELVPEARITTAHGKMGEHRLEQVVEDFWQKRSDVLV 912

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R        +     K  
Sbjct: 913 CTTIVETGLDISNANTLIVERADLLGLSQ----LHQLRGRVGRGRERAYAYFLYPPEKP- 967

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R + +  +    
Sbjct: 968 ---LTETAHDRLRTIASHTDLG 986


>gi|325144576|gb|EGC66875.1| transcription-repair coupling factor [Neisseria meningitidis
           M01-240013]
 gi|325205943|gb|ADZ01396.1| transcription-repair coupling factor [Neisseria meningitidis
           M04-240196]
          Length = 1296

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 141/416 (33%), Gaps = 59/416 (14%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  +   A +L + ++ F PH+                ++P  +T   +  S ++ + 
Sbjct: 37  VVLTLDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSPHQDLV 83

Query: 257 RMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
             R SA   +     D + V   + +  +  V   +     LK G +++   L S LV  
Sbjct: 84  SERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDA 143

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V 
Sbjct: 144 GYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVS 202

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I++     + T            +EE+                           + +  
Sbjct: 203 EIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVYKAVSN 245

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
                 +E Y              TLF+YI ED+L     S   +   +  +  D   + 
Sbjct: 246 GHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSDVKSRY 298

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            +A+     P               L P  + +SA   +  L+    ++ +   +   L 
Sbjct: 299 AMAQGDETYPP--------------LLPQYLYLSADVFAGRLKNYGQVLPDVSGKEHTLP 344

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           D  V       Q ++    +         RILL   +    E +  +L +  ++ +
Sbjct: 345 DLAV-----NRQSDEPLQALKDFQTTFDGRILLCAESLGRRETMLGFLQQNGLKAK 395



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 901  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 957

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 958  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 1015

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 1016 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1064

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1065 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1101

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1102 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1134


>gi|260768914|ref|ZP_05877848.1| transcription-repair coupling factor [Vibrio furnissii CIP 102972]
 gi|260616944|gb|EEX42129.1| transcription-repair coupling factor [Vibrio furnissii CIP 102972]
          Length = 1153

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 105/298 (35%), Gaps = 38/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+     +A++    Q   ++  P+   A +L  E    F    V  F          
Sbjct: 24  LHGASLALAIAELANQHQGHTLLAVPDPQTALKLLQEI-EQFSQANVALF---------- 72

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS-QMI 294
              P  +T      S +++I   R S    L   +  I +  VS +    +   Y  Q  
Sbjct: 73  ---PDWETLPYDNFSPHQEIISERISRLYQLPSLSQGITIVPVSTLLQRQTPRDYLLQHT 129

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +  GD     +L   L    Y+  D     G +   G  +++FP    D  +R+  F 
Sbjct: 130 LMVNRGDRFSLDKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSAD-PYRIDFFD 188

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ I  F P   + I  ++ I++     +    PT   A++  +   + R        
Sbjct: 189 DEIDTIRTFDPENQRSIDEIDAIRLLPAHEF----PTTEQAIEEFRTRWRGR-------- 236

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
              EA+R  + +      +        IE +          +   TLF+Y+P  S L 
Sbjct: 237 --FEARREPESVYM---QVSKGTWPAGIEYWQPLFF-----DHTETLFDYLPAGSQLL 284



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 69/181 (38%), Gaps = 13/181 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q ED  + + +     +G
Sbjct: 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRMA-IKTFVRQSEDSVIREAVLREIMRG 812

Query: 583 LRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++          +    DL + + E  I V   H +++  E   ++ D    +F++LV 
Sbjct: 813 GQVYFLHNQVESIDKVAADLEKLIPEARITVA--HGQMRERELERVMNDFYHQRFNLLVC 870

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K++ 
Sbjct: 871 TTIIETGIDVPTANTIIMDRADSLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAMT 926

Query: 699 L 699
            
Sbjct: 927 K 927


>gi|73541054|ref|YP_295574.1| transcription-repair coupling factor [Ralstonia eutropha JMP134]
 gi|72118467|gb|AAZ60730.1| Transcription-repair coupling factor [Ralstonia eutropha JMP134]
          Length = 1150

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/501 (14%), Positives = 160/501 (31%), Gaps = 65/501 (12%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFFPHN 220
           +    +  +  G+ GS     +A      +       V+  N + A +L  E   F P  
Sbjct: 16  VKPGLRHSM-AGLPGSADALAIAAYARQHRERVPMLAVVCANAVDAQRLADEIPWFAPET 74

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVS 279
            V               +P  +T      S ++ +   R +    +       ++V + +
Sbjct: 75  RVRL-------------LPDWETLPYDSFSPHQDLVSERLATLHDIQTGQCDVMLVPAST 121

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
            +Y +      +      K G+ +++  L +      Y+     +  G + V G  I+++
Sbjct: 122 ALYRLAPPSFLAAYTFFFKQGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLY 181

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P     + +R+ +FG++IE I  F P T + +  V+ +++     +              
Sbjct: 182 PMGSA-LPYRIDLFGDEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDEAARTAF---- 236

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
                         GR  E    +   +   + +        IE Y          E   
Sbjct: 237 -------------RGRWREVFEGDPSKSPIYKDIGNGVPSAGIEYYLPLFF-----ESSA 278

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519
           TLF+++P D+ L           I   +     R   +     R         L  E++ 
Sbjct: 279 TLFDFLPADTQLAF--VGKVDEAIRRFWTDTTQRYDFMRHDRERPLLPPPQLFLSEEQF- 335

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
                   ++A P +  + Q +     Q      + D  V  R+     + + +  +L  
Sbjct: 336 -------FIAAKPLARLVLQSEPAADGQPAFAASVPDVSVNRRAE----DPLVNLESLLL 384

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +  R+L+   T    E L +   E  +R           + ++       G+    + +
Sbjct: 385 DKATRVLMCADTAGRRETLLQLFAESGLR----------PQPVDDFAAFLAGESHFSIAV 434

Query: 640 NLLREGLDIPECGLVAILDAD 660
             L  G  +P      + +A+
Sbjct: 435 APLHSGFMLPSAKFAFVTEAE 455



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 76/198 (38%), Gaps = 20/198 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + I    ++
Sbjct: 759 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGV--IREAILRELKR 816

Query: 582 GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E+    L E + E  I V   H ++   E   ++RD    + ++L+
Sbjct: 817 GGQVYFLHNEVETIENKRAKLAELVPEARIAVA--HGQMHERELERVMRDFVSRRDNILL 874

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +             +
Sbjct: 875 CTTIIETGIDVPTANTILIHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDVDGL 930

Query: 698 QLAIDETTRRRE--KQLE 713
                +  RR E  +Q+E
Sbjct: 931 TK---QAGRRLEAIQQME 945


>gi|325830839|ref|ZP_08164223.1| transcription-repair coupling factor [Eggerthella sp. HGA1]
 gi|325487246|gb|EGC89689.1| transcription-repair coupling factor [Eggerthella sp. HGA1]
          Length = 1161

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 97/516 (18%), Positives = 175/516 (33%), Gaps = 79/516 (15%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           LGV  S + F +A       +P +V+   +  A         +     V  F    DY  
Sbjct: 31  LGVASSARPFLVAARFAHRPQPTLVVVAGEDAAVAFSRSLAAYLGDERVMRFPERSDY-- 88

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQ 292
              +VP+         S   Q+ R R  A  +L    + +VV+S   +   +    S   
Sbjct: 89  --PFVPKP--------SDPAQVAR-RMEAVHALASGREVVVVASARALVRALPPAGSDVH 137

Query: 293 MIVQLKIGDSV------------EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           + V L  G  +            E ++   +L ++ Y+        GTF V G +I++FP
Sbjct: 138 VPVALSAGRELAAMPGAQAASVTEFEDFAHALEERGYRNTGELDGPGTFAVRGGTIDVFP 197

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
            +L     R+  FG+++EEI    P TGQ I+ +  + IY    +   +  L  A     
Sbjct: 198 GNL-VYPVRLDFFGDELEEIRRIVPTTGQTIQALPDVSIYPVVEFSCSKRGLARA----- 251

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
              + +L        +L            LE L+        +    YL          T
Sbjct: 252 ---RQKLERPAATNPVLRDV---------LEKLDGGLRFDGSDMLLPYLY-----ATTST 294

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           L + +   +L  + E       +S  Y     R       G  +P               
Sbjct: 295 LGDCVRPGALSVLLEPRSLFDDMSHAYDDAAGRAK-----GSSIP--------------- 334

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR--TQVEDVYDEINLA 578
                  + A PG+    + Q      I+R  G VD  + ++        + ++  +   
Sbjct: 335 ----VDGLYAEPGAVSFGEGQRATYVSIMRVGGHVDDELPVKRVEVAGHPDKLFGRLRSL 390

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVR-YMHSEVKT-LERIEIIRDLRLGKFDVL 636
                 ++ +    R  +D+     +  + ++  + +E           R LR G  +V+
Sbjct: 391 VDTDYTVVFSASNFRARQDMKLAFVDHGLPIQETLDAEEDADELEGIAKRRLRRGVVNVV 450

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
                L  G+ IP+  L  +  +D +G   S+ S  
Sbjct: 451 DVDVPL--GMIIPKAKLAIVSLSDTQGASTSRPSRH 484



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 22/192 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    ++     + +     + ++ PP E R     V     + V   I    
Sbjct: 768 VLTLSATPIPRTMQMSLSGVRDM----SLILTPPDERRPVEVHVGEWDPDVVSGAIRREL 823

Query: 580 QQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +G ++       R  E+    +T    E  + V   H ++   +   ++ D   G+ DV
Sbjct: 824 ARGGQVYYVSNRVRSMEEAVRRVTAAAGEARVGVA--HGQMSKEQLERVMEDFSAGELDV 881

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  G+D P    + I D+ + G  +    + Q  GR  R   S    YA  +  
Sbjct: 882 LVATTIIESGIDNPHTNTLIIEDSQRYGLAQ----MYQLKGRVGR---SCTQAYAYFMFP 934

Query: 696 SIQLAIDETTRR 707
                 +E   R
Sbjct: 935 EHMELTEEAAAR 946



 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 22/165 (13%)

Query: 146 DYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            Y  + DQ AAIA +   + S +   +L+ G  G GKT      A       +  +V+ P
Sbjct: 615 PYQETPDQLAAIADVKADMQSAKPMDRLVCGDVGFGKTEVALRAAFKATQDSKQVMVLCP 674

Query: 202 NKILAAQLYSEFKNFFPH--NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
             ILA Q Y+ FK         VE    +    Q  A +              ++ D   
Sbjct: 675 TTILAQQHYTNFKERCEPFGVRVEVLSRFRTPAQQAAAL-----------KGFQEGDVDV 723

Query: 260 HSATRSLLERND-----CIVVSSVSCIYGIGSVESYSQMIVQLKI 299
              T  LL R+       +V+      +G+G  E    +   + +
Sbjct: 724 LVGTHRLLSRDVNPHDLGLVIIDEEQRFGVGHKEQMKNLRESIDV 768


>gi|229845348|ref|ZP_04465480.1| transcription-repair coupling factor [Haemophilus influenzae
           6P18H1]
 gi|229811801|gb|EEP47498.1| transcription-repair coupling factor [Haemophilus influenzae
           6P18H1]
          Length = 1146

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 120/335 (35%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V        ++++ E  Q   +V+ P+   A  L          N  
Sbjct: 10  IPTQPNDHKILGNVLPGADALAISEIAEQNQNLTVVVTPDTRSAVHLSRVLSELSSQNVC 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
            +              P  +T      S +++I   R SA   L      I +  +S + 
Sbjct: 70  LF--------------PDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLM 115

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K GD +   ++   L    Y+  +  +  G + V G  +++FP 
Sbjct: 116 QRLCPPQYLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  + +I +     +    PT +  +++ + 
Sbjct: 176 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLDEISSINLLPAHEF----PTDDKGIEFFRA 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +              TL
Sbjct: 231 QFRETFGEIRRDPEHIYQQ------------ISKGTLISGIEYWQPLFFAEM-----ATL 273

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+Y+PE +L    E++ T  Q    Y+    R   
Sbjct: 274 FDYLPEQTLFVDMENNQT--QGERFYQDAKQRYEQ 306



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 12/187 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +D+   + I     +G
Sbjct: 753 ILTLTATPIPRTLNMAMNGIRDLSIIST-PPARRLSIKTFVRQNDDLVVREAILREILRG 811

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++  E   ++ D    +++VLV   
Sbjct: 812 GQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCST 871

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +   
Sbjct: 872 IIETGIDVPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYTYLLTPPPKMMTK- 926

Query: 701 IDETTRR 707
             +  RR
Sbjct: 927 --DAERR 931


>gi|212712824|ref|ZP_03320952.1| hypothetical protein PROVALCAL_03921 [Providencia alcalifaciens DSM
           30120]
 gi|212684516|gb|EEB44044.1| hypothetical protein PROVALCAL_03921 [Providencia alcalifaciens DSM
           30120]
          Length = 1148

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 77/495 (15%), Positives = 175/495 (35%), Gaps = 73/495 (14%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+      A++IE  Q P +++  +   A +++ E + F                 P 
Sbjct: 22  LIGAAGPLECAEMIERHQGPVVIVTRDMQNALRVHDELQQF--------------TQYPI 67

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
             +   +T      S +++I   R S    L   +   +++   + +  +  V+  +   
Sbjct: 68  ETLSDWETLPYDNFSPHQEIISHRLSTLYRLPTLQKGALILPVNTLMQKVCPVDFLAGHA 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +  GD + +  L   L K  Y+  +  +  G + + G  +++FP    D  +R+  F 
Sbjct: 128 LVMAKGDKLSRDNLREELDKAGYRHVEQVLEHGEYAIRGALLDLFPM-GSDFPFRIDFFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ +  F   T + +  V  I +     + T +     A++  + + + R        
Sbjct: 187 DEIDSLRTFDVDTQRTLEEVNAINLLPAHEFPTDKD----AIERFRSQWRER-------- 234

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
              E +R  + I    + +        IE +          EP P+LFEY+P ++L    
Sbjct: 235 --FEVRRDPEHI---YQQVSKQTLPSGIEYWQPLF----FAEPLPSLFEYLPANTLFV-- 283

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
            S           +    R  +              RPL       L P+ + ++    +
Sbjct: 284 -SQNLQEPAERFQQDAQQRYESR--------GVDPMRPL-------LPPSELWLTVEQLN 327

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRS-----ARTQVEDVYDEINLAAQQGLRILLT- 588
             L+    + +     P    +  ++ +       + Q ++  +++    +Q    ++  
Sbjct: 328 QNLKNWPRVQLSTEKLPKKAANTNLDYQPLPDISTQGQGKNPLEKLRQFTEQFDGTIVFS 387

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V ++   E ++E L    IR   + +     +          G+F + +       G   
Sbjct: 388 VESEGRRETVSELLGRLKIRPDIISNYFSQTQ----------GRFAITI--GAAEHGFIQ 435

Query: 649 PECGLVAILDADKEG 663
           PE     I ++D  G
Sbjct: 436 PESHRALICESDLLG 450



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 9/177 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  I  T        +++   Q +D+   + I     +G
Sbjct: 750 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-VKTFVRQYDDLVVREAILRETLRG 808

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E     L       R++  H +++  E   ++ D    +F+VL+   
Sbjct: 809 GQVYYLYNDVENIEKAKARLETLVPEARFVVGHGQMRERELERVMTDFHHQRFNVLICTT 868

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 IIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAM 921


>gi|145633284|ref|ZP_01789015.1| transcription-repair coupling factor [Haemophilus influenzae 3655]
 gi|144986130|gb|EDJ92720.1| transcription-repair coupling factor [Haemophilus influenzae 3655]
          Length = 1146

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 122/335 (36%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V        ++++ E  Q   +V+ P+   A +L          N  
Sbjct: 10  IPTQPNDHKILGNVLPGADALAISEIAEQNQNLTVVVTPDTRSAVRLSRVLSELSSQNVC 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-ERNDCIVVSSVSCI 281
            +              P  +T      S +++I   R SA   L   +    ++  ++ +
Sbjct: 70  LF--------------PDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPILTLM 115

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K GD +   ++   L    Y+  +  +  G + V G  +++FP 
Sbjct: 116 QRLCPPQYLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  + +I +     +    PT +  +++ + 
Sbjct: 176 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLDEISSINLLPAHEF----PTDDKGIEFFRA 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +              TL
Sbjct: 231 QFRETFGEIRRDPEHIYQQ------------ISKGTLISGIEYWQPLFFAEM-----ATL 273

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+Y+PE +L    E++ T  Q    Y+    R   
Sbjct: 274 FDYLPEQTLFVDMENNQT--QGERFYQDAKQRYEQ 306



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 12/187 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +D+   + I     +G
Sbjct: 753 ILTLTATPIPRTLNMAMNGIRDLSIIST-PPARRLSIKTFVRQNDDLVVREAILREILRG 811

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++  E   ++ D    +++VLV   
Sbjct: 812 GQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCST 871

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +   
Sbjct: 872 IIETGIDVPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYTYLLTPPPKMMTK- 926

Query: 701 IDETTRR 707
             +  RR
Sbjct: 927 --DAERR 931


>gi|300743898|ref|ZP_07072918.1| transcription-repair coupling factor [Rothia dentocariosa M567]
 gi|300380259|gb|EFJ76822.1| transcription-repair coupling factor [Rothia dentocariosa M567]
          Length = 1229

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 85/523 (16%), Positives = 169/523 (32%), Gaps = 78/523 (14%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRP--------AIVMAPNKILAAQLYSEFKNFFPHNAV 222
           Q L+G     +   +A +  A++R          +++ P +  A        ++ P + +
Sbjct: 33  QTLIGAVAGVQAPLIADLAVAVRRQSRTGKTPLTLIITPTERQAEDTAHALHSYLPDHHI 92

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
           E F ++ +    E   PR+DT  ++ + +   I  +     + ++     ++   V+ I 
Sbjct: 93  ESFPAW-ETLPHERLSPRSDTVGKRLNVLRS-ITHLETPTPQVVIAPVRAVIQPLVAGIE 150

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +  V         L  G+    K+++  L    Y R D+   RG + V G  I++F + 
Sbjct: 151 NLEPV--------SLARGEEYSFKDVIKGLTDAAYSRVDLVAKRGEYAVRGGIIDVF-AP 201

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKIY---ANSHYVTPRPTLNTAMKY 398
                 R+  FG++++EI  F     + + +  +             +     +  A   
Sbjct: 202 TAQHPVRLEFFGDELDEIRYFSTADQRTLGQEADHPTHVTLLPCRELLITPEVMGRA--- 258

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
                  RL           +  L        E +      + +E+ +  L  +      
Sbjct: 259 ------ARLK----TDYPAASSML--------EKIAGGIYVEGMESLTPLLVDKMQ---- 296

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH----RKATLAEYGFRLP--------S 506
            TL   +PE+SL+   E      +   +   +           A+ G R P        S
Sbjct: 297 -TLVSLLPEESLIISLEPERVRARAEDLVATNEEFLAAAWDASADAGSRAPIDLGQLRVS 355

Query: 507 CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
               R +   +   L         T     +      + + I   T     P    S   
Sbjct: 356 DSGFRTIAATQQESLDRNLSWWEITELVDSVNLLNNALGDDIPTMTVAAQAPA---SFTG 412

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE--VKTLERIEI 624
            VE +  E+    + G  +L     +   + L E   E       +  E  +  + R  +
Sbjct: 413 SVEQMLHEVGSLVRDGWTVLALTNGRGSTDRLIELFRES------ISGEDPIPAIRRETL 466

Query: 625 IR----DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            R     L+ G  +V         G  IPE  L  + + +  G
Sbjct: 467 DRGTEGALQPGVVEV--CETPASAGFLIPEARLAVLTEGEILG 507



 Score = 37.4 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 73/215 (33%), Gaps = 20/215 (9%)

Query: 90  QTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHP 149
           +T+  + + +      L +L  +       G  ++    W                 Y+ 
Sbjct: 623 KTKNRARKAVKEIAADLVKLYSARQ--ASRGHAFSEDTPWQRELEESF--------PYNE 672

Query: 150 SGDQPAAIAQLLKGIHSR-EKVQLLLGVTGSGKT-FTMAKVIEAMQ--RPAIVMAPNKIL 205
           + DQ  AI ++   +       +L+ G  G GKT   +    +A+Q  +   V+ P  +L
Sbjct: 673 TPDQLTAIHEVKADMEKEIPMDRLISGDVGFGKTEVAIRAAFKAVQDGKQVAVLVPTTLL 732

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR- 264
           A Q +  F   F       F               T T +E  +S +  +    H     
Sbjct: 733 AQQHFETFTERFSG-----FPIKIKVLSRFQKAKETRTIVEDIASGSIDVVIGTHRILSE 787

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
           ++  ++  +VV      +G+   E   QM   + +
Sbjct: 788 NVKFKDLGLVVIDEEQRFGVEHKEKLKQMRTNVDV 822


>gi|262043184|ref|ZP_06016320.1| transcription-repair coupling factor [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039462|gb|EEW40597.1| transcription-repair coupling factor [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 1148

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 118/310 (38%), Gaps = 38/310 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + + ++ QL  G +TG+     +A++ E    P +++AP+   A +L  E +  F  + V
Sbjct: 11  VKAGDQRQL--GELTGAACATLVAEMAERHSGPVVLVAPDMQNALRLNDEIRQ-FTDSMV 67

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                + +    +++ P  D    + +++ +     R             ++V   + + 
Sbjct: 68  MGLADW-ETLPYDSFSPHQDIISSRLATLYQLPTMQR-----------GVLIVPVSTLMQ 115

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +          + +K G  + +  L   L    Y+  D  +  G +   G  +++FP  
Sbjct: 116 RVCPHSFLHGHALVMKKGQRLSRDALRDQLEGAGYRHVDQVMEHGEYATRGALLDLFPM- 174

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
             D  +R+  F ++I+ +  F   + + +  V  I +     +    PT  TA++  + +
Sbjct: 175 GSDQPYRLDFFDDEIDSLRLFDVDSQRTLEEVAAINLLPAHEF----PTDQTAIELFRSQ 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            + R           E +R  + I    + +        IE +          EP P LF
Sbjct: 231 WRDR----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLF 273

Query: 463 EYIPEDSLLF 472
            Y P  +L+ 
Sbjct: 274 SYFPASTLIV 283



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDALV--VREAILRETLR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          +   + L E     R    H +++  E   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLFNDVENIQKAADKLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|77463357|ref|YP_352861.1| transcription-repair coupling factor (helicase) [Rhodobacter
           sphaeroides 2.4.1]
 gi|77387775|gb|ABA78960.1| transcription-repair coupling factor (helicase) [Rhodobacter
           sphaeroides 2.4.1]
          Length = 1165

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 80/492 (16%), Positives = 162/492 (32%), Gaps = 74/492 (15%)

Query: 188 VIEAMQR--PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           V + + R  P I +A +      + +      P   V               +P  D   
Sbjct: 21  VAKELDRGAPVIHVARDDKRLEAMRTALAVMAPRAVVL-------------ELPAWDCLP 67

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVV---SSVSCIYGIGSVESYSQMIVQLKIGDS 302
               S N +I   R +   +L        V   +  +    I + E         ++GD 
Sbjct: 68  YDRVSPNPEISARRMATLAALAHGMPGAFVLLTTLNAATQRIPAREVLRAASFSARVGDR 127

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
           V++  L S L +  +   D     G + + G  ++I+P  +     R+  FG+ ++    
Sbjct: 128 VDEGRLRSYLARMGFSLTDTVTEPGDYAIRGGIVDIYPPGVAG-PVRLDFFGDVLDGARR 186

Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
           F P T + +  ++ +++   S  +          +  + E           G        
Sbjct: 187 FDPETQRTVEKLDLVELAPVSEVMLDEGAFTRFRQNYRIE-------FGAAGTD------ 233

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE-SHVTIP 481
                   E +      Q +E++  +   R       TLF+Y+PE S++  D+ +   I 
Sbjct: 234 ----DPLYEAVSAGRKHQGMEHWLPFFHARLE-----TLFDYLPEASVMLDDQVTPARIS 284

Query: 482 QISGMYRGDFHRKATLAEYGFRL-----PSCMDNRPLRFEEWNC-----LRPTTIVVSAT 531
           +  G+      R+  +   G RL     P+  D   L    W              ++ +
Sbjct: 285 RWEGIADQYDARREAMTAKG-RLDTVYKPAAPDLLYLDEAAWEAAVAGHRVIQLSPLAQS 343

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
           PG   L+   G +           +   E  S    + D    +    ++  ++++   +
Sbjct: 344 PGPGVLD-AGGRMGRSF-----APERQAENISLFGALVDHVRSL----REDRQVVIASWS 393

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           +   E L   L E  ++   +  +++ +           G   ++V    L +G   P  
Sbjct: 394 EGARERLKGLLEEAGLQGTKLAQDIRDVPEAR-------GGTHLMVWA--LEQGFTAP-- 442

Query: 652 GLVAILDADKEG 663
           GL  I + D  G
Sbjct: 443 GLAVISEQDVLG 454



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 91/259 (35%), Gaps = 37/259 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 754 HVLTLTATPIPRTLQLSLTGVRDLSIIATPPVDRLA-IRTYVSEFDTVTIREALLRERYR 812

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       D+  +L +    V Y+  H ++   E  E +     GKFDVL+  
Sbjct: 813 GGQSFFVVPRLSDLPDMEAFLRDHVPEVSYVVAHGQLAAGELDERMNAFYDGKFDVLLAT 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R                +  
Sbjct: 873 TIVESGLDIPTANTMIVHRADMFGLSQ----LYQIRGRVGRAKTRAYCYLTTKPRAPL-- 926

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                                 PQ++K  +++  +D +       ++        +L  +
Sbjct: 927 ---------------------TPQAIKRLRLLASLDSLGAGFNLASHDLDLRGAGNLLGE 965

Query: 759 KGKAHLK----SLRKQMHL 773
           +   H+K     L +QM  
Sbjct: 966 EQSGHIKEVGYELYQQMLE 984



 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            Y  + DQ +AIA ++K + S     +L++G  G GKT      A V         V+ P
Sbjct: 602 PYQETDDQLSAIADVVKDLESGSPMDRLVVGDVGFGKTEVAMRAAFVAALAGMQVAVICP 661

Query: 202 NKILAAQLYSEFKNFF 217
             +LA Q +  F   F
Sbjct: 662 TTLLARQHFRSFAERF 677


>gi|299770361|ref|YP_003732387.1| transcription-repair coupling factor [Acinetobacter sp. DR1]
 gi|298700449|gb|ADI91014.1| transcription-repair coupling factor [Acinetobacter sp. DR1]
          Length = 1153

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 117/343 (34%), Gaps = 38/343 (11%)

Query: 155 AAIAQL-LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
             I+QL L+ + + EK   +  + GS       ++        +V+A N    AQL SE 
Sbjct: 4   QEISQLNLQQLKAGEKR-WVGSLLGSSAALLFKEIAVQHSSLLVVVARNNQHVAQLESEL 62

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           + +     +      ++    +   P  D   E+ + ++              + +   +
Sbjct: 63  EFYGIKPTI---FPDWEILPYDRLSPHQDIVSERLAILSN-------------MPQKGVL 106

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           ++S+ +    +            + +G   + ++    LV+  Y   D     G F V G
Sbjct: 107 LLSASTLAQRVAPYSWVLGEHFDIHVGQKFDLEQQKLRLVQAGYHLVDTVYDHGEFAVRG 166

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++IF +  ++   R+ +F ++I+ +  F P T +    +++  +     +        
Sbjct: 167 SIMDIF-ASGQEAPIRIDLFDDEIDTLKFFDPETQRTTTALKSFTVLPAKEFPLKEARSI 225

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                     + R  EL       +            + +    +   IE Y      + 
Sbjct: 226 ---------FRDRYSELFPTANPKK--------NPIYQDVLEGIASPGIEFYLPLFFDKA 268

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
             +   TL  Y+P++ ++       T   ++  ++  F R   
Sbjct: 269 QMQSQSTLTTYLPKNCIVITTNDVDT--DLTNFWKEVFRRYED 309



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 97/259 (37%), Gaps = 52/259 (20%)

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
             +  L+ VDE H    +     +        L      +P     R L    ++ +R  
Sbjct: 725 FKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIP-----RTLNMA-FSGMRDL 778

Query: 525 TIVVSATP-------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN- 576
           +I+  ATP        ++  E  +  + E I+R                QV  +++E++ 
Sbjct: 779 SII--ATPPARRLAVKTFVQEHTEASVKEAILRELLR----------GGQVYFLHNEVDT 826

Query: 577 -LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A + +R+L+                E  + V   H +++  E  ++++     +F+V
Sbjct: 827 IERAAENIRVLV---------------PEARVAVA--HGQMRERELEQVMQQFYHKEFNV 869

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +  
Sbjct: 870 LVCSTIIETGIDVPNANTILIERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVP 922

Query: 696 SIQLAIDETTRRR-EKQLE 713
           SI+    +  +R    Q  
Sbjct: 923 SIKHLKGDAEKRLDAIQRA 941



 Score = 38.9 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 82/233 (35%), Gaps = 33/233 (14%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q G ++ + V T    ++  E   +   +  +R+  +     +   
Sbjct: 638 GKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSSKTH 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            + I DL  GK D++VG + LL+E +   + GL+ + +  + G    +        +A R
Sbjct: 698 TKNIEDLIAGKVDIVVGTHKLLQENVQFKDLGLMVVDEEHRFGVRDKERI------KALR 751

Query: 681 NVNSKVILYADTITKSIQLA---------IDETTRRREKQLEHNKKHNINPQSVKEKIME 731
                + L A  I +++ +A         I     RR       ++H       +  + E
Sbjct: 752 ADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEH------TEASVKE 805

Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR-----KQMHLAADNLN 779
            I   LL       +  +   +  + +  +  +   R      QM      L 
Sbjct: 806 AILRELLRGGQVYFLHNEVDTIERAAENIRVLVPEARVAVAHGQMRE--RELE 856


>gi|152969666|ref|YP_001334775.1| transcription-repair coupling factor [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954515|gb|ABR76545.1| transcription-repair ATP-dependent coupling factor [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 1152

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 119/310 (38%), Gaps = 38/310 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + + ++ QL  G +TG+     +A++ E  + P +++AP+   A +L  E +  F  + V
Sbjct: 15  VKAGDQRQL--GELTGAACATLVAEMAERHKGPVVLVAPDMQNALRLNDEIRQ-FTDSMV 71

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                + +    +++ P  D    + +++ +     R             ++V   + + 
Sbjct: 72  MGLADW-ETLPYDSFSPHQDIISSRLATLYQLPTMQR-----------GVLIVPVSTLMQ 119

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +          + +K G  + +  L   L    Y+  D  +  G +   G  +++FP  
Sbjct: 120 RVCPHSFLHGHALVMKKGQRLSRDALRDQLEGAGYRHVDQVMEHGEYATRGALLDLFPM- 178

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
             D  +R+  F ++I+ +  F   + + +  V  I +     +    PT  TA++  + +
Sbjct: 179 GSDQPYRLDFFDDEIDSLRLFDVDSQRTLEEVAAINLLPAHEF----PTDQTAIELFRSQ 234

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            + R           E +R  + I    + +        IE +          EP P LF
Sbjct: 235 WRDR----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLF 277

Query: 463 EYIPEDSLLF 472
            Y P  +L+ 
Sbjct: 278 SYFPASTLIV 287



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + I     +
Sbjct: 755 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDALV--VREAILRETLR 812

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          +   + L E     R    H +++  E   ++ D    +F+VLV  
Sbjct: 813 GGQVYYLFNDVENIQKAADKLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 873 TIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 926


>gi|149914914|ref|ZP_01903443.1| transcription-repair coupling factor [Roseobacter sp. AzwK-3b]
 gi|149811102|gb|EDM70939.1| transcription-repair coupling factor [Roseobacter sp. AzwK-3b]
          Length = 1155

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/313 (16%), Positives = 106/313 (33%), Gaps = 40/313 (12%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           S      + G         +   +E    P   +A +    A +    + F P   V  F
Sbjct: 2   SGSDHITIGGAPEGFDARLILNEVERRDAPVAHVARDDKRLAAMADALRFFAPDMPVIRF 61

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL---LERNDCIVVSSVSCIY 282
                        P  D       S N  I   R +    L   + R+  ++ +  +   
Sbjct: 62  -------------PGWDCLPYDRISPNPDISAARMATLAGLIHGMPRHFVLLTTLNAATQ 108

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            + + E   +     ++G  +++  L + LV+  + +    +  G + V G  I+I+P  
Sbjct: 109 RVPAREVLKEAAFIARVGQRIDEAGLKAFLVRMGFSQAPTVMEPGDYAVRGGIIDIYPP- 167

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E    R+ +FG+ ++ +  F P T +    +E I++   S  +     +    +  + E
Sbjct: 168 GETGPVRLDLFGDVLDGLRRFDPATQRTTDKLEQIELAPVSEVILDDAAVTRFRQNYRIE 227

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
                      G                E +        IE++  +       E   TLF
Sbjct: 228 -------FGAAGTD----------DPLYEAVSAGRKHAGIEHWLPFFH-----EKLETLF 265

Query: 463 EYIPEDSLLFVDE 475
           +Y+P D+ + +D+
Sbjct: 266 DYLP-DATITLDD 277



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 73/187 (39%), Gaps = 9/187 (4%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 746 HVLTLTATPIPRTLQLSLSGVRDLSIIGTPPVDRL-SIRTYVSEFDPVTIREALLREHYR 804

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++  +L E+   V Y+  H ++   +  + +     GK+DVL+  
Sbjct: 805 GGQSFFVVPRIDDLPEIEAFLSEQVPEVSYVIAHGQMAARDLDDRMNAFYDGKYDVLLAT 864

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + I  AD  G  +    L Q  GR  R+               +  
Sbjct: 865 TIVESGLDIPTANTMIIHRADMFGLSQ----LYQIRGRVGRSKTRAYAYLTTRPRARLTP 920

Query: 700 AIDETTR 706
           A ++  R
Sbjct: 921 AAEKRLR 927



 Score = 38.9 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 48/139 (34%), Gaps = 13/139 (9%)

Query: 108 RLIQ-SDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS 166
           RLI+ +    L+   +  P          +    F     Y  + DQ  AI  +L  + +
Sbjct: 563 RLIRIAAERELRRAPVLEPEHHA----WEEFSARF----PYTETDDQLRAIEDVLADLDA 614

Query: 167 REK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
                +L+ G  G GKT      A V         V+AP  +LA Q Y  F   F    V
Sbjct: 615 GRPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVVAPTTLLARQHYQSFAERFRGFPV 674

Query: 223 EYFVSYYDYYQPEAYVPRT 241
                     Q +A + R 
Sbjct: 675 TVRPLSRFVSQRDANLTRE 693


>gi|260060951|ref|YP_003194031.1| transcription-repair coupling factor [Robiginitalea biformata
           HTCC2501]
 gi|88785083|gb|EAR16252.1| transcription-repair coupling factor [Robiginitalea biformata
           HTCC2501]
          Length = 1121

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 100/249 (40%), Gaps = 12/249 (4%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q      L   I        L G+TGS  +F +A+  +A   P +V+  +K  AA + ++
Sbjct: 12  QAPFFRDLQDAIAQPAATVSLDGLTGSSLSFVVAETFKAQVCPMLVLLGDKEEAAYVLND 71

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            +     + V ++   Y               IE+  + N  +     S   S  ++   
Sbjct: 72  LEELLGRDNVLFYPGSYRRPYE----------IEETDNANVLLRAEVLSRISS-RKKPAL 120

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           IV    +    + + +  S+  +++++GD++    L  +L +  +KR D     G F V 
Sbjct: 121 IVSYPDALFEKVVTRKELSRNTLKVRVGDNLSLDFLNETLFEYHFKRVDFVTEPGEFSVR 180

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  +++F S   D  +R+  FG++I+ I  F   T       + I +  N          
Sbjct: 181 GGIVDVF-SFSHDEPYRLEFFGDEIDSIRSFDVETQLSTDKHKKITLVPNVADKILHEAR 239

Query: 393 NTAMKYIKE 401
            + +KYI +
Sbjct: 240 ESFLKYISD 248



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 73/195 (37%), Gaps = 10/195 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+       +  +I        P+E R  R   E + D I    Q+G 
Sbjct: 707 VLTLTATPIPRTLQFSLMAARDLSVINTPPPNRYPIESRVVRFGEEVIRDAIRYEIQRGG 766

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++           ++   +       R    H +++  +  +++ D   G+FDVLV   +
Sbjct: 767 QVFFVHNRIENIAEVAGLIQRLVPDARVGIGHGQMEGKKLEKLMLDFMNGEFDVLVSTTI 826

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+     + I +A+  G     + L Q  GR  R+       +       +    
Sbjct: 827 IESGLDVTNANTILINNANNFGL----SDLHQMRGRVGRSNKKAFCYFITPPYHVMTA-- 880

Query: 702 DETTRRREKQLEHNK 716
            E  +R E   ++ +
Sbjct: 881 -EARKRMEALEQYTE 894



 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 55/136 (40%), Gaps = 8/136 (5%)

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           +AT       + +  +   I    G     V IR+A   V++      L       IL  
Sbjct: 563 TATEAVKADMESERPMDRLICGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTT---ILAF 619

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI-NLLREGLD 647
              +   E L     E  + V Y++      ER  ++ +L+ GK D+++G   L+ + ++
Sbjct: 620 QHFRTFGERLA----EMPVTVDYLNRFRSAKERRTLLENLKSGKLDIVIGTHQLVGKQVE 675

Query: 648 IPECGLVAILDADKEG 663
             + GL+ + +  K G
Sbjct: 676 FKDLGLLIVDEEQKFG 691


>gi|145638829|ref|ZP_01794437.1| transcription-repair coupling factor [Haemophilus influenzae
           PittII]
 gi|145271801|gb|EDK11710.1| transcription-repair coupling factor [Haemophilus influenzae
           PittII]
 gi|309750812|gb|ADO80796.1| Transcription-repair coupling factor [Haemophilus influenzae R2866]
          Length = 1146

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 121/335 (36%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V        ++++ E  Q   +V+ P+   A +L          N  
Sbjct: 10  IPTQPNDHKILGNVLQGADALAISEIAEQNQNLTVVVTPDTRSAVRLSRILSELSSQNVC 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
            +              P  +T      S +++I   R SA   L      I +  +S + 
Sbjct: 70  LF--------------PDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLM 115

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K GD +   ++   L    Y+  +  +  G + V G  +++FP 
Sbjct: 116 QRLCPPQYLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  + +I +     +    PT +  +++ + 
Sbjct: 176 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLDEITSINLLPAHEF----PTDDKGIEFFRA 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +              TL
Sbjct: 231 QFRETFGEIRRDPEHIYQQ------------ISKGTLISGIEYWQPLFFSEM-----ATL 273

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+Y+PE +L    E++ T  Q    Y+    R   
Sbjct: 274 FDYLPEQTLFVDMENNQT--QGERFYQDAKQRYEQ 306



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 12/187 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +D+   + I     +G
Sbjct: 753 ILTLTATPIPRTLNMAMNGIRDLSIIST-PPARRLSIKTFVRQNDDLVVREAILREILRG 811

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++  E   ++ D    +++VLV   
Sbjct: 812 GQVYYLHNDVASIENTAEKLTTLVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCST 871

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +   
Sbjct: 872 IIETGIDVPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKMMTK- 926

Query: 701 IDETTRR 707
             +  RR
Sbjct: 927 --DAERR 931


>gi|317047729|ref|YP_004115377.1| transcription-repair coupling factor [Pantoea sp. At-9b]
 gi|316949346|gb|ADU68821.1| transcription-repair coupling factor [Pantoea sp. At-9b]
          Length = 1147

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 115/311 (36%), Gaps = 40/311 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + + +  QL  G + G+ +    A + E    P +++ P+   A +L  E + F      
Sbjct: 11  VKAGDHRQL--GQLVGAAQAVECASITERHHGPVLMITPDMQSALRLQEEIRQFTD---- 64

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                      P + +   +T      S ++ I   R S    L      +++  V+ + 
Sbjct: 65  ----------LPVSNLADWETLPYDSFSPHQDIISARLSTLYQLPTLTQGMLIMPVNTLM 114

Query: 283 GIGSVESYSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                 S+     + ++ G  + +  L   L +  Y+  D  +  G +   G  +++FP 
Sbjct: 115 QRVCPHSFLHGHALVMRKGQQLSRDALRDQLEQAGYRHVDQVMEHGEYATRGALLDLFPM 174

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
              D  +R+  F ++I+ +  F   + + +  V+ I +     +    PT   A++  + 
Sbjct: 175 -GSDQPYRIDFFDDEIDSLRLFDVDSQRTLEAVDAINLLPAHEF----PTDKAAIEQFRS 229

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             +             EA+ + Q+++              IE +      +      PTL
Sbjct: 230 RWRETFDVRR------EAEHVYQQVSK-------GTLPAGIEYWQPLFFEQAL----PTL 272

Query: 462 FEYIPEDSLLF 472
           F Y+P ++L+ 
Sbjct: 273 FSYLPANTLIL 283



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREVLR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E   + L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKAAQRLAELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDVPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|269960991|ref|ZP_06175360.1| transcription-repair coupling factor [Vibrio harveyi 1DA3]
 gi|269834210|gb|EEZ88300.1| transcription-repair coupling factor [Vibrio harveyi 1DA3]
          Length = 1123

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 92/512 (17%), Positives = 186/512 (36%), Gaps = 78/512 (15%)

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           +A++ +     ++++ P+  +A +L +E    F   +V  F             P  +T 
Sbjct: 3   IAELAKQHSSHSLLVVPDPQMALKLQAEI-EQFTDQSVSLF-------------PDWETL 48

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS-QMIVQLKIGDSV 303
                S +++I   R +    L  +   + +  VS +    S   +  Q  + +K GD  
Sbjct: 49  PYDNFSPHQEIISDRIARLYQLPNQAGGVTIVPVSTVLQRQSPRDFLLQHTLMVKTGDQF 108

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
             ++L   L    Y+  D     G +   G  +++FP    D  +R+  F ++I+ I  F
Sbjct: 109 SLEKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD-PYRIDFFDDEIDTIRTF 167

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
            P   + I +++ I++     +    PT   A++  +   + +           EA+R  
Sbjct: 168 DPENQRSIEDIQQIQLLPAHEF----PTTKAAIEDFRTRWRSQ----------FEARREP 213

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
           + I      +        IE +          +   TLF+Y+PEDS L +      +  I
Sbjct: 214 ESIYM---QVTKGTWPAGIEYWQPLFF-----DHTETLFDYLPEDSQLII------VGDI 259

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP--GSWELEQCQ 541
                   +      +Y +        RPL       L P  + +        ++     
Sbjct: 260 EAAVDTFLND----VDYRYDQKKIDPLRPL-------LAPHELWLKKDELFAQFKQLPQA 308

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL----RILLTVLTKRMAED 597
            + +E+I++  G  +  V+  +     +   + +    Q       +I+ +V ++   E 
Sbjct: 309 QLSLEKIVKRAGRQNLAVQSLAELGVQQQNKEPLARLRQFSEQFVGKIVFSVESEGRREA 368

Query: 598 LTEYLYERNIRVR-YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           LTE L  + I+VR  +H+ +      +    L LG             G    E     I
Sbjct: 369 LTELL--QGIKVRPVVHASLYQALDSDDRFSLILGA---------AEHGFIHDELNFALI 417

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            ++D  G       +IQ   +  + VNS  ++
Sbjct: 418 CESDLLG-----DRVIQRRRKDKKTVNSDTVI 444



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 74/186 (39%), Gaps = 14/186 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q ED  V +       +G
Sbjct: 724 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQREDSVVREAALREIMRG 782

Query: 583 LRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++      V T  + AEDL + + E  + V   H +++  E   I+ D    +F++LV 
Sbjct: 783 GQVYFLHNQVETIEKTAEDLQKLIPEARVTVA--HGQMRERELERIMNDFYHQRFNLLVC 840

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K+I 
Sbjct: 841 TTIIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAIT 896

Query: 699 L-AIDE 703
             AI  
Sbjct: 897 KDAIKR 902


>gi|255065241|ref|ZP_05317096.1| transcription-repair coupling factor [Neisseria sicca ATCC 29256]
 gi|255050662|gb|EET46126.1| transcription-repair coupling factor [Neisseria sicca ATCC 29256]
          Length = 1158

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 143/421 (33%), Gaps = 59/421 (14%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + +        +E Y              TLF+YI ED+L     S   +   +  +  D
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSD 293

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
              +  +A+     P               L P  + +SA   +  L+    ++ +   +
Sbjct: 294 VKSRYAMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGK 339

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRV 609
              L D  V       Q ++    +         RILL   +    E +  +L +  ++ 
Sbjct: 340 EHTLPDLAV-----NRQSDEPLQALKDFQTTFDGRILLCAESLGRRETMLGFLQQNGLKA 394

Query: 610 R 610
           +
Sbjct: 395 K 395



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 73/187 (39%), Gaps = 17/187 (9%)

Query: 525 TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L                P+  +     ++        V + +    ++
Sbjct: 763 ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSE--GSVREAVLRELKR 820

Query: 582 GLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL+
Sbjct: 821 GGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HRQLRERELEQVMRDFLQQRFNVLL 878

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA--DTITK 695
              ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +         + ITK
Sbjct: 879 CSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPEYITK 934

Query: 696 SIQLAID 702
             +  +D
Sbjct: 935 DAEKRLD 941


>gi|298345580|ref|YP_003718267.1| putative transcription-repair coupling factor [Mobiluncus curtisii
           ATCC 43063]
 gi|298235641|gb|ADI66773.1| possible transcription-repair coupling factor [Mobiluncus curtisii
           ATCC 43063]
          Length = 1165

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 94/608 (15%), Positives = 193/608 (31%), Gaps = 69/608 (11%)

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
              +A +  + +R  +V+AP+   A QL  E   +     VE F  + +    E   PRT
Sbjct: 36  APLIAGLPGSDERLTVVLAPSTRAATQLARELGAYTAG--VELFPDW-ETLPHERLSPRT 92

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           DT   +  ++        H  T    +     +V  V       +       +  +++GD
Sbjct: 93  DTMARRIWAL--------HRVTHPHPQDAVQFLVMPVRAALAPVNAHIADYPLFTVQVGD 144

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
           + ++  + ++L++  Y+R D+   RG F V G  +++F S       R+ +FG++++ I 
Sbjct: 145 TYDRDTMAANLLRLGYERVDMVGARGQFAVRGGLLDVF-SPTSAHPVRIELFGDEVDTIR 203

Query: 362 EFYPLTGQKI-RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
            F     +    ++ T+   A    +        A       L  ++ +  +   L    
Sbjct: 204 AFTASDQRTFGGDIRTLVAPACRELLLDDTARKLA-----ASLAGQMPQAAEILNLAA-- 256

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
                              + +E+ S  L     G     LF  +P  + L   +     
Sbjct: 257 --------------EGKYGEGLESLSPLL-----GAEMVPLFSLLPPGARLVATDR---- 293

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           P++                  +   +     PL  E+ + L    +  +A          
Sbjct: 294 PRLEARATELVETTQEFLAASWSAAAGGGEVPLEIEQASFLTLEQLHAAAQEAHM---DT 350

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
             +    +      V   + +     +   +   I   A +   +++T   K MA  L +
Sbjct: 351 VFVSPFAVGENAQNVGAQIVMEPLAGETG-LIGTIGDLASKNWNVVITTTGKGMASRLRD 409

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
            L E ++  + +       +          G   + V    L EG  +P   L+ + +A 
Sbjct: 410 VLSEADVPAKVVKDATSQND----------GTVQITVAP--LDEGYQVPTAQLLVVSEAQ 457

Query: 661 KEGFLRSKTS---------LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
             G  +S+ +           + I          V+     I + ++LA     R RE  
Sbjct: 458 VLGKKKSRHTADKANLPARRRKAIDPLTLTQGDYVVHLHHGIGRFVKLAKRTMGRGRETT 517

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID-AQQLSLSKKKGKAHLKSLRKQ 770
            +        P        ++  P    D  +  +  +      +            RK 
Sbjct: 518 SKEYVVLEYAPSKRNGPADQLWVPTDSLDLLSKYVGGESPTLSKMGGADWAKTKSKARKA 577

Query: 771 MHLAADNL 778
           +   A  L
Sbjct: 578 VKEIAREL 585



 Score = 46.2 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 69/196 (35%), Gaps = 21/196 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV-----EDVYDEINLA 578
            + +SATP    LE          IR    +  P E R    T V     + V   I   
Sbjct: 768 VLTMSATPIPRTLEMAITG-----IRGMSTLTTPPEDRHPVLTYVGAYSDKQVAAAIRRE 822

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +  ++       +    +  +L E     RVR  H ++   +   ++ D    +FDVL
Sbjct: 823 LLRDGQVFFVHNRVQSINRIAAHLAELVPEARVRVGHGQMSEKQLESVMVDFWNQEFDVL 882

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  GLD+     + +  AD+ G  +    L Q  GR  R        +      +
Sbjct: 883 VSTTIVENGLDVTNANTIIVDRADRFGLSQ----LHQLRGRVGRGRERGYAYFLYPPGTT 938

Query: 697 IQLAIDETTRRREKQL 712
           +     ET   R K +
Sbjct: 939 MN----ETAFERLKTI 950


>gi|222148735|ref|YP_002549692.1| transcription-repair coupling factor [Agrobacterium vitis S4]
 gi|221735721|gb|ACM36684.1| transcription-repair coupling factor [Agrobacterium vitis S4]
          Length = 1175

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 84/522 (16%), Positives = 172/522 (32%), Gaps = 85/522 (16%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
            L  V      F +A++     RP   +  +      +        P   V    ++ D 
Sbjct: 18  TLSPVPDGMDAFLVAEL-ARQGRPVAYLLSDSSRMNDIEQMLGFCAPEIPVLTLPAW-DC 75

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
              +   P  D    + S+++  I   R             ++V++ + +  +   +   
Sbjct: 76  LPYDRVSPSADISARRLSALSGLIAHARKP-------HPGIVLVTANAMLQKLAPADVIE 128

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
            +    + G+ V+  ++ + L +  ++R D     G F V G  +++F    E+   R+ 
Sbjct: 129 SLSFSARPGNQVKMDDVAARLSRNGFERVDTVREVGEFAVRGGILDVFVPGSEE-PVRLD 187

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            FG+ +E I  F P + + I  V ++ +   S       +++            R   L 
Sbjct: 188 FFGDTLESIRSFDPASQRTIGQVRSLDLNPMSEVTLTPESISRF----------RKNYLS 237

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             G       L   ++              +E++          E   T+F+Y+  D  +
Sbjct: 238 LFGAATRDDALYTAVS-------EGRRYAGMEHWMPLFH-----EKLETVFDYLT-DFRV 284

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE--WNCLRPTTIVVS 529
            +D +     +  G    D+        Y  RL S    +    +   +  + P  + + 
Sbjct: 285 VLDHTVRESAEERGKLIRDY--------YEARLNSATPGKGHLAQGTPYKPIPPEYLYLG 336

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI--------------RSARTQVE------ 569
           A   + +LE    I +     P       VE+               S+ T+ +      
Sbjct: 337 AAEFAKKLEALNPIRLTPFAEPDSEGRKIVELSARSGPRWAKLAAQESSETKADGEAQRV 396

Query: 570 ----DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
                    I+     G ++L+T  ++   + L + L E              LER++ +
Sbjct: 397 NVFTQAVKYISDKRASGSKVLITGWSEGSLDRLLQVLNEHG------------LERLKPV 444

Query: 626 RDLR----LGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             L+    LGK      +  L  G +  E  LV + + D  G
Sbjct: 445 TALKDLDQLGKGHAATAVLALEGGFEAGE--LVVVGEQDILG 484



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 97/260 (37%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 779  HVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMA-VRTFISPFDPLVIRETLMREHYR 837

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +            D+  +L      ++V   H ++   E  +I+     G++DVL+  
Sbjct: 838  GGQSFYVCPRLADLADIKAFLESDVPELKVAIAHGQMAAGELEDIMNAFYEGRYDVLLST 897

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLD+P    + +  AD  G  +    L Q  GR  R   SKV  +A  +T  +  
Sbjct: 898  TIVESGLDVPTANTLIVHRADMFGLAQ----LYQIRGRVGR---SKVRAFA-LLTLPVNK 949

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             +  +  RR K                  +++ +D +       ++        +L  ++
Sbjct: 950  VLTTSAERRLK------------------VLQSLDTLGAGFQLASHDLDIRGAGNLLGEE 991

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 992  QSGHIKEVGFELYQQMLEEA 1011


>gi|114704427|ref|ZP_01437335.1| Mfd, transcription-repair coupling factor [Fulvimarina pelagi
           HTCC2506]
 gi|114539212|gb|EAU42332.1| Mfd, transcription-repair coupling factor [Fulvimarina pelagi
           HTCC2506]
          Length = 1172

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 76/519 (14%), Positives = 172/519 (33%), Gaps = 64/519 (12%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFF 217
           L + +     +++   + G+ + F +A++      ++P + +  +    ++L    +   
Sbjct: 7   LKRALKKGGGLEIGNVLDGT-EAFLLAEIARDRGGKKPIVFVMRDGTRMSELEDALRFVQ 65

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-----RNDC 272
           P   V               +P  D         + +    R SA  SL           
Sbjct: 66  PELPVLT-------------LPAWDCLPYDRVGPSGEAAARRLSAMASLNALRQNPHRAV 112

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           I+ ++ + +  +   +  ++  ++ + G S    +++ +L +  ++R      RG F V 
Sbjct: 113 ILTTANALLQKMPPADVLAREAIKAEAGGSARMDDIVEALSRGGFERVATVRERGEFAVR 172

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  +++F    E+   R+  FG+ +E I  F P + +     ++ ++   S     + T+
Sbjct: 173 GGILDLFAPGSEE-PVRLDFFGDTLETIRAFDPASQRTTEQRKSFELAPVSEVSLTKETI 231

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
           +            R   +++ G       L   I+              +E++  +    
Sbjct: 232 SRF----------RSNYVKRFGAAQPGDALYASIS-------EGKRFAGMEHWLPFFY-- 272

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
              E   TLF+Y  +   + +D   +           D +             S      
Sbjct: 273 ---ESVDTLFDYC-DGFPIVLDHLTMESVAERRAVIEDHYEARKRTSGENAAKSAEGVVY 328

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDV 571
              E          +  A   +  +        E   R    +D       SA  Q E+ 
Sbjct: 329 NPVEPAELYLTNDELNGALAIADPIRFSAYGSAETGTREVFNLDVSRGRNFSAERQAENT 388

Query: 572 ------YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
                  D I+     G R++L   T+   + LT+ L E           +  ++ ++ +
Sbjct: 389 NVFQAAVDHISNERANGKRVVLAAWTEGSRDRLTQVLEEHG---------LGQIKPVQNL 439

Query: 626 RDLRLGKFDVLVGINL-LREGLDIPECGLVAILDADKEG 663
           + +R    + +V   L +  G   P+   V + + D  G
Sbjct: 440 KQVREAPKNFVVTAILGIEAGFKTPDI--VVVGEQDILG 476



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 73/191 (38%), Gaps = 13/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  +  T  VD    +R+     + +   + +     +
Sbjct: 771 HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFIAPFDPLVVRETLLRERYR 829

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +             + E+L ++   ++V   H ++   E  +I+     G++DVL+  
Sbjct: 830 GGQSFYVCPRVSDIAGVKEFLDDQVPELKVAVAHGQMAASELDDIMNAFYEGQYDVLLST 889

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLD+P    + +  AD  G  +    L Q  GR  R+      L      K+   
Sbjct: 890 TIVESGLDVPTANTMIVHRADMFGLSQ----LYQIRGRVGRSKQRAYALMTIPANKTPTK 945

Query: 700 AIDETTRRREK 710
             D    RR K
Sbjct: 946 GAD----RRLK 952



 Score = 37.8 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 4/115 (3%)

Query: 107 ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS 166
            RL+   + L++         +  +N        F  +  Y  + DQ  AI  ++  + +
Sbjct: 580 KRLLDMADGLIRVAAERAMRGAPQLNPPEGLFDEFAARFPYEETDDQANAIDAVVDDLAA 639

Query: 167 REK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
                +L+ G  G GKT      A V         ++ P  +LA Q +  F   F
Sbjct: 640 GRPMDRLICGDVGFGKTEVALRAAFVAAMNGLQVAIVVPTTLLARQHFKTFAERF 694


>gi|146277540|ref|YP_001167699.1| transcription-repair coupling factor [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555781|gb|ABP70394.1| transcription-repair coupling factor [Rhodobacter sphaeroides ATCC
           17025]
          Length = 1163

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 84/512 (16%), Positives = 172/512 (33%), Gaps = 73/512 (14%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
                 LL G         +AK ++    P I +A +      + +      P   V   
Sbjct: 2   QNGTRILLGGAPEGYDARLVAKELDRGA-PVIHVARDDKRLEAMRAALAVMAPQAVVL-- 58

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL---LERNDCIVVSSVSCIY 282
                       +P  D       S N +I   R +   +L   +     ++ +  +   
Sbjct: 59  -----------ELPAWDCLPYDRVSPNPEISSRRMATLAALAHGMPGPFVLLTTLNAATQ 107

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            I + +         ++GD V++  L + L +  +   D     G + + G  ++IFP  
Sbjct: 108 RIPARDLLRAASFTARVGDRVDEGRLRTYLSRMGFSLTDTVTEPGDYAIRGGIVDIFPPG 167

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
           +     R+  FG+ ++    F P T + +  ++ +++   S  +    ++    +  + E
Sbjct: 168 VAG-PVRLDFFGDVLDGARRFDPETQRTVEKLDLVELAPVSEVMLDEGSITRFRQNYRIE 226

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
                      G                E +      Q +E++  +       E   TLF
Sbjct: 227 -------FGAAGTD----------DPLYEAVSAGRKHQGMEHWLPFFH-----ERLETLF 264

Query: 463 EYIPEDSLLFVDE-SHVTIPQISGMYRGDFHRKATLAEYGFRL-----PSCMDNRPLRFE 516
           +Y+PE S++  D+ +   I +  G+      R+  +   G RL     PS  +   L   
Sbjct: 265 DYLPEASVMLDDQVTPARISRWEGIADQYDARREAMTAKG-RLDTVYKPSAPELLYLDEA 323

Query: 517 EWNC-----LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            W+             ++ +PG   L+   G +           +   E  S       +
Sbjct: 324 AWDAAVVGHRVIQLSPLAQSPGPGVLD-AGGRMGRNF-----APERQAENVSLFG---AL 374

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            D +    +QG  +++   ++   E L   L +  ++           + +  IRD+  G
Sbjct: 375 VDHVRTLREQGQ-VVIASWSEGARERLKGLLEDAGLQGA---------KFVRDIRDVPEG 424

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +    + +  L +G   P  GL  I + D  G
Sbjct: 425 RGGTHLMVWSLEQGFTAP--GLAVISEQDVLG 454



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 91/259 (35%), Gaps = 37/259 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 754 HVLTLTATPIPRTLQLSLTGVRDLSIIATPPVDRLA-IRTYVSEFDTVTIREALLRERYR 812

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       D+  +L E    V Y+  H ++   +  E +     GKFDVL+  
Sbjct: 813 GGQSFFVVPRLSDLPDMEAFLREHVPEVTYVVAHGQLAAGDLDERMNAFYDGKFDVLLAT 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R                +  
Sbjct: 873 TIVESGLDIPTANTMIVHRADMFGLSQ----LYQIRGRVGRAKTRAYCYLTTKPRAPL-- 926

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                                 PQ++K  +++  +D +       ++        +L  +
Sbjct: 927 ---------------------TPQAIKRLRLLASLDSLGAGFNLASHDLDLRGAGNLLGE 965

Query: 759 KGKAHLK----SLRKQMHL 773
           +   H+K     L +QM  
Sbjct: 966 EQSGHIKEVGYELYQQMLE 984



 Score = 38.5 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            Y  + DQ +AIA ++K + S     +L++G  G GKT      A V         V+ P
Sbjct: 602 PYQETDDQLSAIADVIKDLESGSPMDRLVVGDVGFGKTEVAMRAAFVAALAGMQVAVICP 661

Query: 202 NKILAAQLYSEFKNFF 217
             +LA Q +  F   F
Sbjct: 662 TTLLARQHFRSFSERF 677


>gi|145642248|ref|ZP_01797814.1| transcription-repair coupling factor [Haemophilus influenzae R3021]
 gi|145273053|gb|EDK12933.1| transcription-repair coupling factor [Haemophilus influenzae
           22.4-21]
          Length = 1160

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 121/335 (36%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V        ++++ E  Q   +V+ P+   A +L          N  
Sbjct: 24  IPTQPNDHKILGNVLPGADALAISEITEQNQNLTVVVTPDTRSAVRLSRVLSELSSQNVC 83

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
            +              P  +T      S +++I   R SA   L      I +  +S + 
Sbjct: 84  LF--------------PDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLM 129

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K GD +   ++   L    Y+  +  +  G + V G  +++FP 
Sbjct: 130 QRLCPPQYLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPM 189

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  + +I +     +    PT +  +++ + 
Sbjct: 190 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLDEISSINLLPAHEF----PTDDKGIEFFRA 244

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +              TL
Sbjct: 245 QFRETFGEIRRDPEHIYQQ------------ISKGTLISGIEYWQPLFFAEM-----ATL 287

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+Y+PE +L    E++ T  Q    Y+    R   
Sbjct: 288 FDYLPEQTLFVDMENNQT--QGERFYQDAKQRYEQ 320



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 12/187 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +D+   + I     +G
Sbjct: 767 ILTLTATPIPRTLNMAMNGIRDLSIIST-PPARRLSIKTFVRQNDDLVVREAILREILRG 825

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++  E   ++ D    +++VLV   
Sbjct: 826 GQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCST 885

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +   
Sbjct: 886 IIETGIDVPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKMMTK- 940

Query: 701 IDETTRR 707
             +  RR
Sbjct: 941 --DAERR 945


>gi|16273176|ref|NP_439413.1| transcription-repair coupling factor [Haemophilus influenzae Rd
           KW20]
 gi|260581174|ref|ZP_05848994.1| transcription-repair coupling factor [Haemophilus influenzae RdAW]
 gi|1170943|sp|P45128|MFD_HAEIN RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|1574188|gb|AAC22905.1| transcription-repair coupling factor (mfd) [Haemophilus influenzae
           Rd KW20]
 gi|260092202|gb|EEW76145.1| transcription-repair coupling factor [Haemophilus influenzae RdAW]
          Length = 1146

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 58/335 (17%), Positives = 122/335 (36%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V        ++++ E  Q   +V+ P+   A +L     +      V
Sbjct: 10  IPTQPNDHKILGNVLPGADALAISEISEQNQNLTVVVTPDTRSAVRLSR-VLSELSSQDV 68

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
             F             P  +T      S +++I   R SA   L      I +  +S + 
Sbjct: 69  CLF-------------PDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLM 115

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K GD +   ++   L    Y+  +  +  G + V G  +++FP 
Sbjct: 116 QRLCPPQYLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  + +I +     +    PT +  +++ + 
Sbjct: 176 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLDEISSINLLPAHEF----PTDDKGIEFFRA 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +              TL
Sbjct: 231 QFRETFGEIRRDPEHIYQQ------------ISKGTLISGIEYWQPLFFAEM-----ATL 273

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+Y+PE +L    E++ T  Q    Y+    R   
Sbjct: 274 FDYLPEQTLFVDMENNQT--QGERFYQDAKQRYEQ 306



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 12/187 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +D+   + I     +G
Sbjct: 753 ILTLTATPIPRTLNMAMNGIRDLSIIST-PPARRLSIKTFVRQNDDLVVREAILREILRG 811

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++  E   ++ D    +++VLV   
Sbjct: 812 GQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCST 871

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +   
Sbjct: 872 IIETGIDVPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKMMTK- 926

Query: 701 IDETTRR 707
             +  RR
Sbjct: 927 --DAERR 931


>gi|292493142|ref|YP_003528581.1| transcription-repair coupling factor [Nitrosococcus halophilus Nc4]
 gi|291581737|gb|ADE16194.1| transcription-repair coupling factor [Nitrosococcus halophilus Nc4]
          Length = 1158

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 86/525 (16%), Positives = 160/525 (30%), Gaps = 60/525 (11%)

Query: 157 IAQLLKGIHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           +A L   +  +      LG + GS     +A        P +V+ P+ I A +L  E + 
Sbjct: 7   LASLSPALPQQAGDHRHLGRLYGSSFGLILATSARHHLGPILVITPDTITANRLEDELRF 66

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
           +                 P  + P  +T      S ++ I   R +    L      +++
Sbjct: 67  YCSGQQDF----------PILHFPDWETLPYDIFSPHQDIISERLATLYQLPRLEHGVLI 116

Query: 276 SSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
             VS +   +   E      + +  GD +  +     L K  Y+     +  G     G 
Sbjct: 117 VPVSTLMQRLAPREYLETHGLLVATGDRLHLETWRKQLEKGGYRCVSQVMEHGEVAFRGS 176

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I++FP     V +R+ +F ++++ +  F P T +    VE I++     +         
Sbjct: 177 LIDLFPM-GSRVPYRIDLFDDEVDSLRSFDPETQRSSEQVEQIQLLPAREFPLTEE---- 231

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A+   +                   + L  R       +        IE Y      R  
Sbjct: 232 AITQFR-------KNYRSTFSGDPQRSLVYR------EVSEGTLPPGIEYYLPLFFDRT- 277

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
                TLF+Y+PE++L    E     P     ++    R              ++   L 
Sbjct: 278 ----DTLFDYLPENTLAVTLERVH--PAADTFWKEISDRYEQRRH-------DLERPLLN 324

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            ++             T     L+  +               P + I +  +Q     + 
Sbjct: 325 PQQLYLQTGQLFTALKTLPRISLQPSELEEKAGHQNFATEAPPQLTINARASQ---PLET 381

Query: 575 INLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +N   +    R+L    T    E L E L +  I               E        K 
Sbjct: 382 LNRFIENFEGRVLFAAETTGRRETLRELLKDSGI----------QPHPFENWEAFLQDKE 431

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
              + +  L++GL + +  L  I  A+ + F        +  GR 
Sbjct: 432 RFGITVAPLQQGLLLGKPQLAVI--AEPQLFGEQAMQQRRRKGRT 474



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 70/179 (39%), Gaps = 13/179 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q +D  + + +    ++G
Sbjct: 761 VLTLTATPIPRTLHMSLSGLRDLSIIATPPARRLA-IKTFVRQWDDSLLREALLREIKRG 819

Query: 583 LRILLT----VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +I          ++MA  +     E  + V   H +++  E  +++ +    +F+VLV 
Sbjct: 820 GQIYFLHNEVESIEKMAHRVQTLFPEAKVGVA--HGQMRERELEQVMLNFYHRRFNVLVC 877

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             +
Sbjct: 878 TTIIETGIDIPSANTIIIHRADKFGLAQ----LYQLRGRVGRSHHRAYAYLIVPPRSVM 932


>gi|403956|gb|AAB01010.1| Homology to GenBank Accession Number M80215, uvrB [Mycoplasma
           genitalium]
          Length = 115

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 64/115 (55%), Positives = 84/115 (73%)

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           Q++RPT LVDP + ++   TQVED+ +EI    Q   R  +TVLT +MAE+LTEYL ER 
Sbjct: 1   QLVRPTYLVDPIIVVKPKITQVEDLIEEIINQRQNNTRTFVTVLTIKMAENLTEYLKERK 60

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           I+V Y+H ++K LER+ +I DLR G+++ LVGINLLREGLD+PE  LV I DAD 
Sbjct: 61  IKVAYIHKDIKALERLLLINDLRRGEYECLVGINLLREGLDVPEVALVCIFDADI 115


>gi|319940955|ref|ZP_08015292.1| transcription-repair coupling factor [Sutterella wadsworthensis
           3_1_45B]
 gi|319805528|gb|EFW02323.1| transcription-repair coupling factor [Sutterella wadsworthensis
           3_1_45B]
          Length = 1194

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/402 (16%), Positives = 127/402 (31%), Gaps = 48/402 (11%)

Query: 216 FFPHNAVEYFVSYYDYYQP---EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE---R 269
                 V        +++P      +P  +T      S  E++   R  A   L      
Sbjct: 53  CADPADVPRLAQEMPWFEPKLDVRPLPDWETLPYDVLSPQEELVSERLEALYRLTAPTGG 112

Query: 270 NDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
            D ++ S+V+    +  V            G+ +    L   L    Y      +  G F
Sbjct: 113 ADVLLTSAVTASQRLSPVSYIGANTFFFHQGEQISLTTLQKRLAAAGYTNVKQVLAAGEF 172

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
            V G  +++FP   E   +R+  F ++IE I  F   T + + + E I++     +    
Sbjct: 173 AVRGSIVDVFPMGSE-RPFRLDFFDDEIESIRWFDVDTQRSMESAEEIRLLPGHEFPVDP 231

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
             L    +      + R        + +               +E       IE Y    
Sbjct: 232 EALLAFRQ------RWRREFAGDPKKSIVYC-----------DIEKEILPPGIEYYLPLF 274

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
                 +    L +Y+P ++ +F+         +    R    R   LA    R     +
Sbjct: 275 F-----DETAALTDYLPPNARVFLLGD--IEAALQAFGRDMASRYKVLAADPQRPALAPE 327

Query: 510 NRPLR-FEEWNCLRPTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
              L+  E +  L       V     + +L++  GI V+               R ++  
Sbjct: 328 RIWLKPEEFFKSLANFARFTVEKKENAEDLKRLSGIEVD---------------RKSQNP 372

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           V  + +    +A +G+R L+   +    E +++ L    + V
Sbjct: 373 VGKLLERTRESAMKGVRTLIAAPSAGRMETMSQLLRTGGLSV 414



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 7/175 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L    +GI    +I         V+      Q   + + +    ++G 
Sbjct: 759 VLTLTATPIPRTLSMSLEGIRDFSVIATAPERRLAVKTFVTSEQDGTIREAVLRELKRGG 818

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E+    L       R    H +++  E   ++RD    +F+VL+   +
Sbjct: 819 QVYYLHNEVNTIENARARLETLVPEARIAVAHGQMRERELEHVMRDFYQQRFNVLLCSTI 878

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  G+D+P    + I  ADK G  +    L Q  GR  R+ +            +
Sbjct: 879 IETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPDGA 929


>gi|302530260|ref|ZP_07282602.1| transcription-repair coupling factor [Streptomyces sp. AA4]
 gi|302439155|gb|EFL10971.1| transcription-repair coupling factor [Streptomyces sp. AA4]
          Length = 1192

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 85/520 (16%), Positives = 158/520 (30%), Gaps = 71/520 (13%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA-----MQRPAIVMAPNKILAAQL 209
            A+  +++   +   +  L G   + +    A + E        RP + +      A +L
Sbjct: 18  PALRGVVE--RAGAPLLELQGAV-AVRQLVAAALAEDPERGGAGRPVLAVTATGREADEL 74

Query: 210 YSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER 269
            +        + V  F S+ +    E   PR DT               R      L   
Sbjct: 75  TASLSALLGPDRVADFPSW-ETLPHERLSPRADTVGR------------RLEVLHRLHTG 121

Query: 270 ND--CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
           ++   +VV++V  +    +    S   + L +G+    ++LL  LV+  Y R D+   RG
Sbjct: 122 DEQLRVVVATVRSLIQPMAPGLGSLAPIDLVVGEEQSFEDLLERLVELAYTRVDMVEKRG 181

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKIYANSHYV 386
            F V G  +++F         RV  +G+++ EI  F     + +   ++ +        +
Sbjct: 182 EFAVRGGILDLF-GPTAQHPVRVEFWGDEVSEIRAFAVSDQRSLPGEIQRVTAPPCRELL 240

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
                   A      EL                    +   +  EML        +E   
Sbjct: 241 LTPDVKARA-----AELATT----------------YEADAHLAEMLTKLSGGVPVEGME 279

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS 506
             +     GE    L + +P+ S + + +      +I               E  +   +
Sbjct: 280 ALIPVLCEGE-LALLTDAMPQGSHVLLADP----EKIRARAADLVRTGQEFLEASWTTAA 334

Query: 507 CMDNRP--LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                P  L    +  L         T   W        + +       +    +E   A
Sbjct: 335 AGGQAPIDLGASAYRELSEIASHAQETKRPW------WTLTQLTSEDPDVYRVGIEPAPA 388

Query: 565 -RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
            R ++E    ++      G   +L V  +  A    E L    +  +++           
Sbjct: 389 YRGELERAMTDLRAHLAAGGTGVLVVAGQGTASRAVEQLMAAEVPAKHVEVLSDVPP--- 445

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                      V V    L EG   PE  LV + +AD  G
Sbjct: 446 --------AGVVTVTCGGLAEGFVSPERALVVLSEADLTG 477



 Score = 45.1 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP +     T V   +D      +  + 
Sbjct: 784 VLTMSATPIPRTLEMSLAGIREM----STILTPPEDRHPILTYVGAYDDKQVGAAVRREL 839

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E   + + E     R +  H ++   +  +II+     ++DVLV
Sbjct: 840 LRDGQVFYVHNRVSSIEKAAKRIRELVPEARVVTAHGQMNEDKLEKIIQGFWENEYDVLV 899

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +   D  G  +    L Q  GR  R        +        
Sbjct: 900 CTTIVETGLDISNANTLIVERGDMLGLAQ----LHQLRGRVGRGRERGYAYFLYPPEAP- 954

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N +  
Sbjct: 955 ---LTETAHDRLATIAQNTELG 973



 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A Q G ++ + V T    ++     TE +    + ++ +       E 
Sbjct: 666 GKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLNTFTERMRSFPVTIKGLSRFTHKAES 725

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKT 669
             I+  L  G+ D+++G + LL+ G+   + GLV + +  + G    + 
Sbjct: 726 DRILEQLADGEVDIVIGTHRLLQTGIRYKDLGLVIVDEEQRFGVEHKEH 774


>gi|221134655|ref|ZP_03560958.1| transcription-repair coupling factor [Glaciecola sp. HTCC2999]
          Length = 1170

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 79/453 (17%), Positives = 151/453 (33%), Gaps = 57/453 (12%)

Query: 162 KGIHSREKVQLLL--GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           K IH   + Q +    + GS     +A   ++  RP +V+ P+   A +L  E + F   
Sbjct: 11  KSIHESNRPQHISWGSLPGSSSALAIASAAQSELRPIVVITPDSPSAMRLEQEIRFFLKT 70

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           +  E+       + P    P  +T    + S ++ I   R      L  +   I +  V+
Sbjct: 71  SDGEH------QHVPVGLFPDWETLPYDQFSPHQDIVSQRLETLYDLTTQRRGIYIMPVN 124

Query: 280 -CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
             +  +  V   +Q ++ L++G +++  E    L    Y      +    F V G  I++
Sbjct: 125 TVMQRLAPVTYLAQYLLFLEVGQTLDISEFRRKLENAGYLHVSQVMNHSEFSVRGSIIDL 184

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           +P   E   +R+ +F ++I+ IS F     +    V+ I++     + T           
Sbjct: 185 YPMGSE-QPFRIDLFDDEIDSISYFNTSDQRSGDKVQHIRLLPAREFPTDEAARKLF--- 240

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
                  R   L +       + +  +IT               E Y             
Sbjct: 241 -------RSNFLNQFDENNAKESVFYQITK-------GTMPGGAEYYLPLFFN-----DT 281

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
            T+F+Y  +++L  V        +    +    HR        +R       RPL     
Sbjct: 282 STIFDYFHDNTLTMV--HGNVFERCERFWADVNHRYDQ-----YRFNQA---RPL----- 326

Query: 519 NCLRPTTIVVSATPGSWELEQCQ--GIIVEQIIRPTGLVDP------PVEIRSARTQVED 570
             L+P  + + +T     L++     I  E + +  G  +        + + S       
Sbjct: 327 --LKPEQLYLDSTQVFARLKERARIDITSELLEKKAGRYNFNVSKVDNIALNSQAKVPYQ 384

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
             D          RI+    T+   E+L   L 
Sbjct: 385 ALDSFIKTQSASSRIVFCAETQGRQENLMGLLK 417



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 69/180 (38%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II        P++    +   E + + +     +G 
Sbjct: 771 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLPIKTFVQKRNHETIREAVMREILRGG 830

Query: 584 RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E    +LT+ + E  I +   H +++  E  +++ D    +++VL+  
Sbjct: 831 QVYFLHNDVATIENTMQELTDIIPEARIAIG--HGQMRERELEQVMDDFYHQRYNVLLCT 888

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           + +  
Sbjct: 889 TIIETGIDVPSANTIIMDRADHLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPRRMTK 944


>gi|294650684|ref|ZP_06728038.1| transcription-repair coupling factor TRCF [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292823475|gb|EFF82324.1| transcription-repair coupling factor TRCF [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 1153

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 73/495 (14%), Positives = 163/495 (32%), Gaps = 61/495 (12%)

Query: 155 AAIAQL-LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
             I+QL L+ + + EK   +  + GS       ++        +++A N    AQL SE 
Sbjct: 4   QEISQLNLQQLKAGEKR-WIGSLLGSSAALLFKEIATQSSNLYVIVARNNQHLAQLESEL 62

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           + +     +      ++    +   P  D   E+ + ++              + +   +
Sbjct: 63  EFYGIKPTI---FPDWEILPYDRLSPHQDIVSERLAILSN-------------MPQKGIL 106

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           ++S+ +    +            +K+G  ++ +     LV+  Y+  D     G F V G
Sbjct: 107 LISASTLAQRVAPYSWVVGEHFDIKVGQKLDLETQKKQLVQAGYRLVDTVYDHGEFAVRG 166

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++IF +  ++   R+ +F ++IE +  F P T +   +++   +     +        
Sbjct: 167 SIMDIF-ASGQEQPIRIDLFDDEIESLKFFDPETQRTTESLKNFTVLPAKEFPLKEGRST 225

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                     + R  E        +            + +    +   +E Y      + 
Sbjct: 226 ---------FRDRYAESFPTANPKK--------NPIYQDVLEGIATPGLEFYLPLFFDKK 268

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY--GFRLPSCMDNR 511
             E       Y+P++    V  ++    ++   ++    R            LP   ++ 
Sbjct: 269 VMEAQSMFTAYLPKN--CIVITNNEIEDELINFWKEVVRRYEDRRHNIDQPILPP--EDL 324

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            L              + A+P   +L+   G++     +P  L   P + +  +  V+D 
Sbjct: 325 FLMPNHVLQALNQLPRIIASPDVLDLK--SGVLNLASEQPPKLAVDPKKEQPFQA-VKDY 381

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            D      Q    +LL   +    E L + L           S +  ++ +E     +  
Sbjct: 382 ID------QSKFPVLLVAESAGRRETLKDALR----------SVLGEIQTVESFTQFQKD 425

Query: 632 KFDVLVGINLLREGL 646
           K  V +    L  GL
Sbjct: 426 KLKVAITSAPLDRGL 440



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 71/193 (36%), Gaps = 11/193 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-VYDEINLAAQQGL 583
            + ++ATP    L      + +  I  T            +   +D + + I     +G 
Sbjct: 756 MLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEHTDDSIKEAILRELLRGG 815

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   E +       R    H +++  E  ++++     +++VLV   +
Sbjct: 816 QVYFLHNEVETIERAAENIRHLVPEARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTI 875

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +  SI+   
Sbjct: 876 IETGIDVPNANTIIIERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVPSIKHLK 928

Query: 702 DETTRRR-EKQLE 713
            +  +R    Q  
Sbjct: 929 GDAEKRLDAIQRA 941


>gi|226953095|ref|ZP_03823559.1| transcription-repair coupling factor [Acinetobacter sp. ATCC 27244]
 gi|226836187|gb|EEH68570.1| transcription-repair coupling factor [Acinetobacter sp. ATCC 27244]
          Length = 1153

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 73/495 (14%), Positives = 163/495 (32%), Gaps = 61/495 (12%)

Query: 155 AAIAQL-LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
             I+QL L+ + + EK   +  + GS       ++        +++A N    AQL SE 
Sbjct: 4   QEISQLNLQQLKAGEKR-WIGSLLGSSAALLFKEIATQSSNLYVIVARNNQHLAQLESEL 62

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           + +     +      ++    +   P  D   E+ + ++              + +   +
Sbjct: 63  EFYGIKPTI---FPDWEILPYDRLSPHQDIVSERLAILSN-------------MPQKGIL 106

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           ++S+ +    +            +K+G  ++ +     LV+  Y+  D     G F V G
Sbjct: 107 LISASTLAQRVAPYSWVVGEHFDIKVGQKLDLETQKKQLVQAGYRLVDTVYDHGEFAVRG 166

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++IF +  ++   R+ +F ++IE +  F P T +   +++   +     +        
Sbjct: 167 SIMDIF-ASGQEQPIRIDLFDDEIESLKFFDPETQRTTESLKNFTVLPAKEFPLKEGRSI 225

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                     + R  E        +            + +    +   +E Y      + 
Sbjct: 226 ---------FRDRYAESFPTANPKK--------NPIYQDVLEGIATPGLEFYLPLFFDKK 268

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY--GFRLPSCMDNR 511
             E       Y+P++    V  ++    ++   ++    R            LP   ++ 
Sbjct: 269 VMEAQSMFTAYLPKN--CIVITNNEIEDELINFWKEVVRRYEDRRHNIDQPILPP--EDL 324

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            L              + A+P +  L+   G++     +P  L   P + +  +  V+D 
Sbjct: 325 FLMPNHVLQALNQLPRIIASPDA--LDSKSGVLNLASEQPPKLAVDPKKEQPFQA-VKDY 381

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            D      Q    +LL   +    E L + L           S +  ++ +E     +  
Sbjct: 382 ID------QSKFPVLLVAESAGRRETLKDALR----------SVLGEIQTVESFAQFQKD 425

Query: 632 KFDVLVGINLLREGL 646
           K  V +    L  GL
Sbjct: 426 KLKVAITSAPLDRGL 440



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 11/193 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-VYDEINLAAQQGL 583
            + ++ATP    L      + +  I  T            +   +D + + I     +G 
Sbjct: 756 MLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEHTDDSIKEAILRELLRGG 815

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   E +       R    H +++  E  ++++      ++VLV   +
Sbjct: 816 QVYFLHNEVETIERAAENIRHLVPEARVAVAHGQMRERELEQVMQQFYHKDYNVLVCSTI 875

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +  SI+   
Sbjct: 876 IETGIDVPNANTIIIERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVPSIKHLK 928

Query: 702 DETTRRR-EKQLE 713
            +  +R    Q  
Sbjct: 929 GDAEKRLDAIQRA 941


>gi|300790028|ref|YP_003770319.1| transcription-repair coupling factor [Amycolatopsis mediterranei
           U32]
 gi|299799542|gb|ADJ49917.1| transcription-repair coupling factor [Amycolatopsis mediterranei
           U32]
          Length = 1184

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 86/481 (17%), Positives = 143/481 (29%), Gaps = 72/481 (14%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P + +      A +L +  K     + V  F S+ +    E   PR DT          
Sbjct: 50  KPVLAVTATGREADELTASLKALIGESRVADFPSW-ETLPHERLSPRADTVGR------- 101

Query: 254 QIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
                R      L   +D   +VV++V  +    +    S   V L +G+    + LL  
Sbjct: 102 -----RLEVLHRLKTGDDDLRVVVATVRSLIQPMAPGLGSLAPVDLVVGEEQSFEGLLER 156

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV+  Y R D+   RG F V G  +++F         RV  +G+++ EI  F     + +
Sbjct: 157 LVELAYTRVDMVEKRGEFAVRGGILDLF-GPTAQHPVRVEFWGDEVSEIRAFAVSDQRSL 215

Query: 372 -RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
             ++  +        +  RP    A                      E  +  +   +  
Sbjct: 216 PGDIPRVTAPPCRELLLTRPVREKA---------------------AELAKTYESDAHLA 254

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           EML        +E     +     GE    L + +P  + + + +               
Sbjct: 255 EMLTKLADGIPVEGMEALIPVLCEGE-LELLTDAMPAGTHVLLTDPEKI----------- 302

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             R A L   G               +     P  +  SA  G  E+             
Sbjct: 303 RARAADLVRTGQEFLEASWTTAAAGGQ----APIDLGASAYRGLDEIASHAQDTKRAWWT 358

Query: 551 PTGLVDPP-------VEIRSA-RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
            T L           VE   A R ++E    ++      G   +L V     A    E  
Sbjct: 359 ITQLTSEDPDVYRVSVEAAPAYRGELERATADLRAHTAAGGTAVLVVAGHGTAARAVEQF 418

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
              ++        +K                 V V    L +G   PE  LV + +AD  
Sbjct: 419 SAADVPASLAGDGLKGAP----------APGVVTVTCGGLTDGFISPERALVVLTEADLT 468

Query: 663 G 663
           G
Sbjct: 469 G 469



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 68/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP +     T V   +D      +  + 
Sbjct: 776 VLTMSATPIPRTLEMSLAGIREM----STILTPPEDRHPILTYVGAYDDKQVGAAIRREL 831

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     + E     R +  H ++   +  +II+     ++DVLV
Sbjct: 832 LRDGQVFYVHNRVSSIEKAARRIRELVPEARVVTAHGQMNEDKLEKIIQGFWENEYDVLV 891

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +   D  G  +    L Q  GR  R        +        
Sbjct: 892 CTTIVETGLDISNANTLLVERGDLLGLAQ----LHQLRGRVGRGRERGYAYFLYPPEAP- 946

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N +  
Sbjct: 947 ---LTETAHDRLATIAQNTELG 965



 Score = 38.5 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 69/216 (31%), Gaps = 20/216 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K T+  +++ +      L +L  +       G  + P   W                 + 
Sbjct: 576 KNTKARAKKAVKEIAAELVQLYAARQ--AAPGHAFGPDTPWQGELEDAF--------PFT 625

Query: 149 PSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKI 204
            + DQ AAI ++   +       +++ G  G GKT      A       +   V+ P  +
Sbjct: 626 ETNDQLAAIDEVKADMERGVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTL 685

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT- 263
           LA Q  + F     H  +  F               +D  +E+ +S    I    H    
Sbjct: 686 LAQQHLNTF-----HERMRSFPVTIKGLSRFTNKTESDIILEQLASGEVDIVIGTHRLLQ 740

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
             +  ++  +V+      +G+   E    +   + +
Sbjct: 741 TGIRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVDV 776


>gi|145636878|ref|ZP_01792543.1| transcription-repair coupling factor [Haemophilus influenzae
           PittHH]
 gi|145269959|gb|EDK09897.1| transcription-repair coupling factor [Haemophilus influenzae
           PittHH]
          Length = 878

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 120/335 (35%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V        ++++ E  Q   +V+ P+   A +L          N  
Sbjct: 24  IPTQPNDHKILGNVLPGADALAISEISEQNQNLTVVVTPDTRSAVRLSRVLSELSSQNVC 83

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
            +              P  +T      S +++I   R SA   L      I +  +S + 
Sbjct: 84  LF--------------PDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLM 129

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K GD +   ++   L    Y+  +  +  G + V G  +++FP 
Sbjct: 130 QRLCPPQYLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPM 189

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  + +I +     +    PT +  +++ + 
Sbjct: 190 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLDEINSINLLPAHEF----PTDDKGIEFFRA 244

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +              TL
Sbjct: 245 QFRETFGEIRRDPEHIYQQ------------ISKGTLISGIEYWQPLFFAEM-----ATL 287

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+Y+PE +L    E++    Q    Y+    R   
Sbjct: 288 FDYLPEQTLFVDMENNQM--QGERFYQDAKQRYEQ 320


>gi|315499869|ref|YP_004088672.1| transcription-repair coupling factor [Asticcacaulis excentricus CB
           48]
 gi|315417881|gb|ADU14521.1| transcription-repair coupling factor [Asticcacaulis excentricus CB
           48]
          Length = 1168

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 86/454 (18%), Positives = 152/454 (33%), Gaps = 60/454 (13%)

Query: 174 LGVTGSGKTF--TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           L +TG    +   +A  +   +  A+ +A +      +  E   + P   V  F ++ D 
Sbjct: 14  LSLTGCPPGYDSLVASDLTRAEGLALFVARDHGRMNAIAEELAFYAPELDVIRFPAW-DC 72

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
              +   P T    ++ S +       R  A      +   I+ +S S    +   ++  
Sbjct: 73  LPYDRVSPTTGLIAQRMSGLT------RLQALNGKPAKPVLILTTSASLSQKVPPRDAMR 126

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
             ++ LK G S+E  EL +   +  Y R      RG F V G  I++F S  +D   R+ 
Sbjct: 127 GSLLSLKPGQSIETGELEAYFSRNGYNRVSTVSERGEFAVRGGIIDVF-SPSQDEPVRLD 185

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            FG+ +E I  F P T + ++ +  I   A S  +    +++   +         L    
Sbjct: 186 FFGDQLESIRTFDPETQRSLKQIAAIDFMAVSEILLDEKSISRFRQG-------YLENFG 238

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             G                  +      Q +E            E   ++F+Y+P  +L+
Sbjct: 239 APGD-----------DPIYAAVSAGIRRQGVETLLPLFY-----ERLDSVFDYLPSQTLI 282

Query: 472 FVDESHVTIPQISGMYRG-----DFHRK-----------ATLAEYGFR-LPSCMDNRPLR 514
            +D       Q  G +R         RK           A   + G+R LP   D   L 
Sbjct: 283 LLD---GLAEQAFGEWRDSVLDAYESRKGSGDARVMAKGAVKLDSGYRALPP--DRLYLD 337

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
             EW        V          ++     ++   RP     P     S       V D 
Sbjct: 338 DSEWQSGLQKGRVRQF----ETFQRDDASAIDLGARPGRSFAPERHQDSV-NLFTAVTDH 392

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
             L ++ G R+L    T+  ++ L   L +  + 
Sbjct: 393 AKLLSKAGKRVLFASWTEGSSDRLGAMLSDHGLD 426



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 81/191 (42%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + +SATP    L+     I E  I  T  VD    +R+     +   + + +     +
Sbjct: 770 HMLTLSATPIPRTLQMALSGIREMSIIATPPVDRLA-VRTYVLPFDAVSIREALLREKYR 828

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V   +   DL  +L E+   V+++  H ++   +  E++     G++DVL+  
Sbjct: 829 GGQAYYVVPRLKDLPDLERFLREQVPEVKFIVGHGQMTPTQLEEVMTAFYDGQYDVLLAT 888

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLD+P    + +  AD  G  +    L Q  GR  R   SK   +A   T+  Q+
Sbjct: 889 TIVESGLDVPTANTLIVHRADMFGLAQ----LYQIRGRVGR---SKTRAFAYLTTQPHQI 941

Query: 700 AIDETTRRREK 710
             + + +R + 
Sbjct: 942 LSEASEKRLKV 952


>gi|215429881|ref|ZP_03427800.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis EAS054]
 gi|260200049|ref|ZP_05767540.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis T46]
 gi|289442441|ref|ZP_06432185.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis T46]
 gi|289753081|ref|ZP_06512459.1| transcription-repair coupling factor Mfd [Mycobacterium
           tuberculosis EAS054]
 gi|289415360|gb|EFD12600.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis T46]
 gi|289693668|gb|EFD61097.1| transcription-repair coupling factor Mfd [Mycobacterium
           tuberculosis EAS054]
          Length = 1234

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 11/227 (4%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             QL++    R     L+    S +    + +      P +V+      A  L +E +  
Sbjct: 26  FQQLMQRAGGRPDELTLI-APASARLLVASALARQ--GPLLVVTATGREADDLAAELRGV 82

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           F    V    S+ +    E   P  DT   +  +    + R+ H    + L     +VV+
Sbjct: 83  FGD-TVALLPSW-ETLPHERLSPGVDTVGTRLMA----LRRLAHPD-DAQLGPPLGVVVT 135

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           SV  +    + +      + L +GD      +++ LV+  Y R D+   RG F V G  +
Sbjct: 136 SVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGIL 195

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
           +IF +   +   RV  +G++I E+  F     + I  ++   + A +
Sbjct: 196 DIF-APTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFA 241



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E     T V   +D      L  + 
Sbjct: 799 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGPHDDKQIAAALRREL 854

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +           +     + E     R +  H ++        ++     + D+LV
Sbjct: 855 LRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILV 914

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +        
Sbjct: 915 CTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPP---- 966

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
           Q+ + ET   R   +  N +  
Sbjct: 967 QVPLTETAYDRLATIAQNNELG 988


>gi|261392435|emb|CAX49980.1| transcription-repair coupling factor (TRCF) [Neisseria meningitidis
           8013]
          Length = 1379

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 99/282 (35%), Gaps = 36/282 (12%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F P             Y    ++P  +T   +  S 
Sbjct: 32  HRRLKVVLTQDAEQALRLQTAWRFFRP-------------YDTAVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++     + T            +EE+                           
Sbjct: 198 ISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           + +        +E Y              TLF+YI ED+L  
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV 278



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 91/273 (33%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 984  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 1040

Query: 581  QGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++          E+    L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 1041 RGGQVFFLHNEVDTIENMRGRLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 1098

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 1099 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1147

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1148 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1184

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1185 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1217


>gi|238897365|ref|YP_002923042.1| transcription-repair ATP-dependent coupling factor [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465120|gb|ACQ66894.1| transcription-repair ATP-dependent coupling factor [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 1151

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 119/323 (36%), Gaps = 41/323 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE     AI++ P++    QL  E + F  H              P 
Sbjct: 23  LTGSACVLECAEIIERHLGLAILITPDRQTGLQLEYELQAFISH--------------PI 68

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMI 294
           + +P  +T      S ++ I   R +    L  R+   ++  ++         S+  +  
Sbjct: 69  SILPDWETLPYDHFSPHQSIISDRLACLYQLPSRDRGAIIIPINTFMQRICPYSFLHRHA 128

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           V LK    +    L   L K  Y+     +  G F + G  ++++P   E+  +R+  F 
Sbjct: 129 VFLKKNQRLSLDLLRVQLDKAGYRSVHQVMEHGEFAIRGGLLDLYPMGSEE-PYRIDFFD 187

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           N+IE +  F   T + +  +E I +     +   +    TA++  + + + +        
Sbjct: 188 NEIESLRVFDVDTQRTLSEIEQINLLPAHEFPIDK----TAIESFRSQWREQ-------- 235

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF-V 473
              E +R  + I    + +        IE +          EP  TLF+Y+  D LL  +
Sbjct: 236 --FEIRRDPEHI---YQQVSKNILPAGIEYWQPLF----FNEPLDTLFDYLSADVLLMNI 286

Query: 474 DESHVTIPQISGMYRGDFHRKAT 496
            +         G ++    R   
Sbjct: 287 GDIQAAAE---GFWKDIHQRYEH 306



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 67/189 (35%), Gaps = 15/189 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   +    + + I     +
Sbjct: 752 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLSVKTFVREYDS--FLIKEAILREILR 809

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E   E L +     R    H +++  +   ++ D    +F++LV  
Sbjct: 810 GGQVYYLYNEVETIEKTYETLKKLVPEARITLAHGQMRERDLERVMNDFHHQRFNLLVCT 869

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I  A+  G  +    L Q  GR  R+ +           K    
Sbjct: 870 TIIETGIDIANANTIIIEKANHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPK---- 921

Query: 700 AIDETTRRR 708
           AI    ++R
Sbjct: 922 AITNDAKKR 930


>gi|16760091|ref|NP_455708.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142138|ref|NP_805480.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213425039|ref|ZP_03357789.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|25290813|pir||AI0644 transcription-repair coupling factor (TrcF) STY1256 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502385|emb|CAD08340.1| transcription-repair coupling factor (TrcF) [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29137767|gb|AAO69329.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 1148

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 121/309 (39%), Gaps = 38/309 (12%)

Query: 165 HSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            + ++ QL  G +TG+     +A++ E    P +++AP+   A +L+ E + F   + + 
Sbjct: 12  KAGDQRQL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT--DQMV 67

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
             ++ ++    +++ P  +    + S++ +     R             ++V   + +  
Sbjct: 68  MNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQR 116

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +          + +K G  + +  L + L    Y+  D  +  G +   G  +++FP   
Sbjct: 117 VCQHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + 
Sbjct: 177 E-QPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQW 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           +             E +R  + I    + +        IE +          EP P LF 
Sbjct: 232 RDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFS 274

Query: 464 YIPEDSLLF 472
           Y P ++L+ 
Sbjct: 275 YFPANTLVV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|301169996|emb|CBW29600.1| transcription-repair coupling factor [Haemophilus influenzae 10810]
          Length = 1146

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 120/335 (35%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V        ++++ E  Q   +V+ P+   A +L          N  
Sbjct: 10  IPTQPNDHKILGNVLPGADALAISEIAEQNQNLTVVVTPDTRSAVRLSRVLSELSSQNVC 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
            +              P  +T      S +++I   R SA   L      I +  +S + 
Sbjct: 70  LF--------------PDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLM 115

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K GD +   ++   L    Y+  +  +  G + V G  +++FP 
Sbjct: 116 QRLCPPQYLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  + +I +     +    PT +  +++ + 
Sbjct: 176 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLDEINSINLLPAHEF----PTDDKGIEFFRT 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +              TL
Sbjct: 231 QFRETFSEIRRDPEHIYQQ------------ISKGTLISGIEYWQPLFFAEM-----ATL 273

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+Y+PE +L    E++    Q    Y+    R   
Sbjct: 274 FDYLPEQTLFVDMENNQM--QGERFYQDAKQRYEQ 306



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 12/187 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +D+   + I     +G
Sbjct: 753 ILTLTATPIPRTLNMAMNGIRDLSIIST-PPARRLSIKTFVRQNDDLVVREAILREILRG 811

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++  E   ++ D    +++VLV   
Sbjct: 812 GQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCST 871

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +   
Sbjct: 872 IIETGIDVPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKMMTK- 926

Query: 701 IDETTRR 707
             +  RR
Sbjct: 927 --DAERR 931


>gi|315656087|ref|ZP_07908978.1| transcription-repair coupling factor [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315493089|gb|EFU82689.1| transcription-repair coupling factor [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 1165

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 93/608 (15%), Positives = 190/608 (31%), Gaps = 69/608 (11%)

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
              +A +  + +R  +V+AP+   A QL  E   +     VE F  + +    E   PRT
Sbjct: 36  APLIAGLPGSDERLTVVLAPSTRAATQLARELGAYTAG--VELFPDW-ETLPHERLSPRT 92

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           DT   +  ++        H  T    +     +V  V       +       +  +++GD
Sbjct: 93  DTMARRIWAL--------HRVTHPHPQDAVHFLVMPVRAALAPVNAHIADYPLFTVQVGD 144

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
           + ++  + + L++  Y+R D+   RG F V G  +++F         R+ +FG++++ I 
Sbjct: 145 TYDRDTMAADLLRLGYERVDMVGARGQFAVRGGLLDVFSPTAA-HPVRIELFGDEVDTIR 203

Query: 362 EFYPLTGQKI-RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
            F     +    ++ T+   A    +        A       L  ++ +  +   L    
Sbjct: 204 AFTASDQRTFGGDIRTLVAPACRELLLDDTARKLA-----ASLAGQMPQAAEILNLAA-- 256

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
                              + +E+ S  L     G     LF  +P  + L   +     
Sbjct: 257 --------------EGKYGEGLESLSPLL-----GAEMVPLFSLLPPGARLVATDR---- 293

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           P++                  +   +     PL  E+ + L    +   A          
Sbjct: 294 PRLEARATELVETTQEFLAASWSAAAGGGEVPLEIEQASFLTLEQLHAVAQEAHM---DT 350

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
             +    +      V   + +     +   +   I   A +   +++T   K MA  L +
Sbjct: 351 VFVSPFAVGENAQNVGALIVMEPLAGETG-LIGTIGDLASKNWNVVITTTGKGMASRLRD 409

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
            L E ++  + +       +          G   + V    L EG  +P   L+ + +A 
Sbjct: 410 VLSEADVPAKVVKDATSQND----------GTVQITVAP--LDEGYQVPAAQLLVVSEAQ 457

Query: 661 KEGFLRSKTS---------LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
             G  +S+ +           + I          V+     I + ++LA     R RE  
Sbjct: 458 VLGKKKSRHTADKANLPARRRKAIDPLTLTQGDYVVHLHHGIGRFVKLAKRTMGRGRETT 517

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID-AQQLSLSKKKGKAHLKSLRKQ 770
            +        P        ++  P    D  +  +  +      +            RK 
Sbjct: 518 SKEYVVLEYAPSKRNGPADQLWVPTDSLDLLSKYVGGESPTLSKMGGADWAKTKSKARKA 577

Query: 771 MHLAADNL 778
           +   A  L
Sbjct: 578 VKEIAREL 585



 Score = 46.2 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 69/196 (35%), Gaps = 21/196 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV-----EDVYDEINLA 578
            + +SATP    LE          IR    +  P E R    T V     + V   I   
Sbjct: 768 VLTMSATPIPRTLEMAITG-----IRGMSTLTTPPEDRHPVLTYVGAYSDKQVAAAIRRE 822

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +  ++       +    +  +L E     RVR  H ++   +   ++ D    +FDVL
Sbjct: 823 LLRDGQVFFVHNRVQSINRIAAHLAELVPEARVRVGHGQMSEKQLESVMVDFWNQEFDVL 882

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  GLD+     + +  AD+ G  +    L Q  GR  R        +      +
Sbjct: 883 VSTTIVENGLDVTNANTIIVDRADRFGLSQ----LHQLRGRVGRGRERGYAYFLYPPGTT 938

Query: 697 IQLAIDETTRRREKQL 712
           +     ET   R K +
Sbjct: 939 MN----ETAFERLKTI 950


>gi|297572061|ref|YP_003697835.1| transcription-repair coupling factor [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296932408|gb|ADH93216.1| transcription-repair coupling factor [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 1168

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 114/331 (34%), Gaps = 37/331 (11%)

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
            G+ S ++ Q+ +   G+      A      +R  +++      A +L +   ++ PH+ 
Sbjct: 17  AGLESEKECQIDV-PRGAVAPLVAALTEIDQRRTNVIVTATGREADELATLLGSYIPHDT 75

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
           +    ++ +    E   PR+DT   +  ++              L+     ++      +
Sbjct: 76  IAVLPAW-ETLPHERLSPRSDTVARRLRTLRRLAHPEEFPPLLVLIVPVRSLLQPVAQGL 134

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +  V         +KIGD+++  ++   LV   Y R D+   RG F V G  ++IFP 
Sbjct: 135 GELTPVV--------IKIGDTIDIADVQERLVAHAYTRVDMVETRGEFAVRGGILDIFPP 186

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E    R+ +FG+++++I  F     + I     +        +      + A +    
Sbjct: 187 -TEAHPMRIELFGDEVDDIRSFAVADQRSIEKCAEVYAPPCRELIFTDSVRSRASQA--- 242

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
                                 +     ++MLE   +  ++E     +    P   P   
Sbjct: 243 ---------------------METFPGAIDMLEKIANGIAVEGMESLMPILVPEMHPV-- 279

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
            +Y P+ + + V E      +   +      
Sbjct: 280 LDYFPQQTRIIVVEPERVTARADSLIETTDE 310



 Score = 44.3 bits (103), Expect = 0.090,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 72/202 (35%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE      V  I + + L  PP E     T V     + +   I    
Sbjct: 767 VLSMSATPIPRTLEMA----VTGIRQMSTLATPPEERHPILTYVGGHEPKQISAAIKREL 822

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++       +    +   + E     R    H ++   +  ++I+     + DVLV
Sbjct: 823 LRDGQVFYIHNRTQSIHKVAAEISELVPEARVGVAHGKMTEHQLEDVIQAFWDKEIDVLV 882

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + + DA K G  +    L Q  GR  R  +     +     K++
Sbjct: 883 CTTIVETGLDISNANTLIVEDAHKLGLSQ----LHQLRGRVGRGRDRAYAYFLYPRDKAM 938

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
                ET   R + +  + +  
Sbjct: 939 ----TETAIERLRTIATHSELG 956


>gi|119960591|ref|YP_947136.1| transcription-repair coupling factor [Arthrobacter aurescens TC1]
 gi|119947450|gb|ABM06361.1| transcription-repair coupling factor [Arthrobacter aurescens TC1]
          Length = 1210

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 83/478 (17%), Positives = 161/478 (33%), Gaps = 54/478 (11%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            + +      A  L +   ++ P  +V  F S+ +    E   PR+DT   + S     +
Sbjct: 67  VLAVTATGREAEDLTAALASYLPAESVATFPSW-ETLPHERLSPRSDTVGRRLSV----L 121

Query: 256 DRMRH---SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
            R+ H   S T  L      +       + G+G +         L++G      E++ +L
Sbjct: 122 RRLTHPETSTTAPLRVVVAPVRAVVQPIVAGLGDLVPV-----TLQVGQERSFTEVVRAL 176

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
               Y R D+   RG F V G  +++FP   ED   RV  FG++++++  F     + + 
Sbjct: 177 SDAAYARVDMVTHRGEFAVRGGILDVFPP-TEDHPIRVEFFGDEVDQMRWFAVADQRSL- 234

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
           +   I      H    R  L TA          R  +L+ +                LE 
Sbjct: 235 SAPGIHHPTELHAPPCREILITASVM------SRAAKLKADMPAAADM---------LEK 279

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYRG 489
           +    + + +E+ +  L             + +P  SL  V E          ++     
Sbjct: 280 IAGGIAVEGMESLAPVLVDAMVP-----FVDQLPAGSLSVVIEPEKVRTRAHDLAATNEE 334

Query: 490 DFHRKATLAEYGFRLP---SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
                 + A  G   P   S   +  L    +  L   T   +   G            E
Sbjct: 335 FLEAAWSTASDGGAAPLDLSSQASTDLHAASFRSLTD-TRSAALEHGVSWWSITSLASDE 393

Query: 547 QIIRPTGLVDPPV-EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
            ++    +++    E R  +  V ++ + I    ++  R+++       A+ L E  ++ 
Sbjct: 394 DLVLDIDVLNMRAREPRGYQGDVAEMLEFIGSRVREQWRVVVVTDGPGPAQRLAELFHDA 453

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            I    + S         + ++ + G  +V      +  G  +    L  + +AD  G
Sbjct: 454 EIPCSRVDS---------LDKEPQPGIIEV--TTAAVGRGFVLDGLKLGLLTEADLLG 500



 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 52/149 (34%), Gaps = 11/149 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     T    PP E     T V     +     I    
Sbjct: 810 VLAMSATPIPRTLEMSLTGIRETSTLAT----PPEERHPVLTYVGPYTNKQTSAAIRREL 865

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E +   + E     R    H ++      +II D    +FDVLV
Sbjct: 866 MREGQVFFVHNRVSSIERIAAQIRELVPEARVEVAHGQMSESRLEKIIVDFWEKRFDVLV 925

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLR 666
              ++  GLDI     + +  ADK G  +
Sbjct: 926 CTTIIETGLDISNANTLIVDGADKYGLSQ 954


>gi|260776195|ref|ZP_05885090.1| transcription-repair coupling factor [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607418|gb|EEX33683.1| transcription-repair coupling factor [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 1153

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 62/329 (18%), Positives = 120/329 (36%), Gaps = 47/329 (14%)

Query: 166 SREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
           + +K Q+  G + G+     +A++        ++   +   A +L  E    F    V  
Sbjct: 15  AGDKKQV--GNLQGASLALAIAELANQHSSHTLLAVADPQTALKLLQEI-EQFTQQEVSL 71

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
           F             P  +T      S +++I   R +    L  +N  I +  ++ +   
Sbjct: 72  F-------------PDWETLPYDNFSPHQEIISDRIARLYQLPTQNSGITIVPINTLLQR 118

Query: 285 GSVESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
            S   +  Q  + +K+GD    ++L   L K  Y+  D     G +   G  +++FP   
Sbjct: 119 QSPRDFLMQHTLMVKVGDLYSLEKLRIQLEKSGYRHVDQVFGPGEYASRGSILDLFPMGA 178

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
            D  +R+  F ++I+ I  F P   + I +V+ I++     +    PT  +A++  +   
Sbjct: 179 SD-PFRIDFFDDEIDTIRTFDPENQRSINDVKEIRLLPAHEF----PTSESAIEDFRIRW 233

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           + R           EA+R  + +      +        IE +     G        TLF+
Sbjct: 234 RQR----------FEARREPESVYM---QVSKGTWPAGIEYWQPLFFGHTE-----TLFD 275

Query: 464 YIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           YI +DS L       T+  +         
Sbjct: 276 YIADDSQLI------TVGDLEAAIDHFLS 298



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 14/186 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q +D  V + +     +G
Sbjct: 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQRDDAVVREAVLREIMRG 812

Query: 583 LRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +I          E    DL + + E  I V   H +++  E   I+ D    +F++LV 
Sbjct: 813 GQIYFLHNQVETIEKVAADLEKLIPEARITVA--HGQMRERELERIMNDFYHQRFNLLVC 870

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K++ 
Sbjct: 871 TTIIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAMT 926

Query: 699 L-AIDE 703
             AI  
Sbjct: 927 KDAIKR 932


>gi|213649271|ref|ZP_03379324.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 1130

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 115/297 (38%), Gaps = 35/297 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TG+     +A++ E    P +++AP+   A +L+ E + F   + +   ++ ++    +
Sbjct: 4   LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT--DQMVMNLADWETLPYD 61

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           ++ P  +    + S++ +     R             ++V   + +  +          +
Sbjct: 62  SFSPHQEIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQRVCQHSYLHGHAL 110

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K G  + +  L + L    Y+  D  +  G +   G  +++FP   E   +R+  F +
Sbjct: 111 VMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE-QPYRLDFFDD 169

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ +  F   T + +  VE I +     +    PT   A++  + + +           
Sbjct: 170 EIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQWRDT--------- 216

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             E +R  + I    + +        IE +          EP P LF Y P ++L+ 
Sbjct: 217 -FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYFPANTLVV 265



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 733 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 790

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 791 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 848

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 849 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 904


>gi|254673347|emb|CBA08563.1| transcription-repair coupling factor [Neisseria meningitidis
           alpha275]
          Length = 1375

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 72/411 (17%), Positives = 139/411 (33%), Gaps = 47/411 (11%)

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           P+K L   L  + +          F   +D      ++P  +T   +  S ++ +   R 
Sbjct: 31  PHKQLKVVLTQDAEQALRLQTAWLFFRPHDT---AVFLPDWETLPYERFSPHQDLVSERL 87

Query: 261 SATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA   +     D + V   + +  +  V   +     LK G +++   L S LV   Y  
Sbjct: 88  SALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDAGYNH 147

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
               +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  I++
Sbjct: 148 VSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTISPVSEIRL 206

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
                + T            +EE+                           + +      
Sbjct: 207 LPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVYKAVSNGHFG 249

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +E Y              TLF+YI ED+L     S   +   +  +  D   +  +A+
Sbjct: 250 AGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSDVKSRYAMAQ 302

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
                P               L P  + +SA   +  L+    ++ +   +   L D  V
Sbjct: 303 GDETYPP--------------LLPQHLYLSADIFAGRLKNYGQVLPDVSGKEHILPDLAV 348

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
             R +   ++ + D          RILL   +    E +  +L +  ++ +
Sbjct: 349 N-RQSEEPLQALKD---FQTAFEGRILLCAESLGRRETMLGFLQQNGLKAK 395



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 980  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 1036

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 1037 RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 1094

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 1095 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1143

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1144 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1180

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1181 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1213


>gi|171463611|ref|YP_001797724.1| transcription-repair coupling factor [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193149|gb|ACB44110.1| transcription-repair coupling factor [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 1181

 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 91/519 (17%), Positives = 171/519 (32%), Gaps = 64/519 (12%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRP---AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
            G+ GS     +A+     +      ++       A +L  E   F P            
Sbjct: 23  SGLIGSSDAALIAQTALRYRDKFSVMVIFCAQAQEAQRLLEEIPAFAPQLK--------- 73

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVES 289
                  +P  +       S ++ +   R +    LL  +  IV+  V+  +  +G    
Sbjct: 74  ----TRLLPDWEILPYDHFSPHQDLVSERLATLYELLNGSCNIVLVPVTTALQRLGPPNF 129

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
            +      + GD + +  L   L +  Y      +  G + + G   ++FP    ++ +R
Sbjct: 130 LASHTFFFRQGDKLNEAALKLQLQQAGYDPVSAVMRPGEYSIRGGLFDLFPM-GSNLPYR 188

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           + +FG++IE+I  F P T + +  V+ +++     +     +  +               
Sbjct: 189 LDLFGDEIEQIRAFNPDTQRSLYPVKEVRLLPGHEFPFDDTSRTSF-------------- 234

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE-- 467
               GR  E    +       +          IE+Y          E   +LF+Y+P   
Sbjct: 235 ---RGRWREVFEGDPSRCSIYKDASLGIPSAGIESYLPLFF-----EENSSLFDYLPRSG 286

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           D +  V     +I  +    +G    K TL+ Y F L   +D   L  +E          
Sbjct: 287 DPVWLV-----SIGDVEETIKGF--WKDTLSRYEF-LKHDLDRPILPPKELFLDVDEFFS 338

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
            S       LE       E    P    D  V  R A    + +    N+ A + +R+L+
Sbjct: 339 TSKPYARLSLENEAVEKNEFFAVP----DISVHRRDA----DPISRLRNVVASENVRVLI 390

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI--EIIRDLRLGKFDVLVGINLLREG 645
              +    E + +   E N         + +L+    + I +    +    +    L  G
Sbjct: 391 CSDSAGRKESIRQLFDESNSVASVDGKSLYSLKPEGFDSIAEFIKSESLFGLVTAPLFNG 450

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
              P   L+ I +A  E F  +        G+A  N +S
Sbjct: 451 FSWPSENLIVITEA--ELFTTTTRQR--RKGKANENADS 485



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 70/180 (38%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-AQQGL 583
            + ++ATP    L      + E  I  T            R + +DV  E  L   ++G 
Sbjct: 774 ILTLTATPIPRTLGMAMEGLREFSIIATAPQKRLAIKTFVRREGDDVIREAVLREIKRGG 833

Query: 584 RILLT---VLT-KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T +     L E + E  I V   H ++   E   ++R+    + ++L+  
Sbjct: 834 QVYFLHNEVETIQNRKHALQELIPEARISVA--HGQMHERELESVMREFVTQRTNILLCT 891

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +          ++++  
Sbjct: 892 TIIETGIDVPTANTIIMHRADKFGLAQ----LHQLRGRVGRSHHRAYAYLLVPNSEALSK 947


>gi|256833153|ref|YP_003161880.1| transcription-repair coupling factor [Jonesia denitrificans DSM
           20603]
 gi|256686684|gb|ACV09577.1| transcription-repair coupling factor [Jonesia denitrificans DSM
           20603]
          Length = 1216

 Score =  130 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 116/311 (37%), Gaps = 49/311 (15%)

Query: 181 KTFTMAKVIEAMQR---------PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           +   +A ++ A +          P +V+      A +L    + + P +AV    ++ + 
Sbjct: 38  RPALLAAMVTATRSRDNGPQRRGPIVVVTATGREADELAQALRCYVPTDAVATLPAW-ET 96

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY----GIGSV 287
              E   PR+DT   + +       R+ H +   +    D + V   + +     G+G +
Sbjct: 97  LPHERLSPRSDTVARRLAVF----RRLAHPSAEGVTGDIDVLTVPVRALLQPVVQGLGDL 152

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
                    L++GDSV+  ++   L    Y R D+   RG F V G  +++FP H E   
Sbjct: 153 TPVR-----LQVGDSVDLTDVAHQLADAAYARVDMVERRGEFAVRGGILDVFPPH-EAHP 206

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            RV  FG+++++I+ F     + +                 R  L TA   I++     +
Sbjct: 207 LRVDFFGDEVDDITYFAVADQRSLDPAPNGVWAPPC-----RELLLTA--QIRQRAHDLV 259

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
            +L     +LE              +    + + +E+ +  L           + + +P+
Sbjct: 260 PQLPGAAEMLEK-------------MSQGIAVEGMESLTPVLVDTMVP-----VLDMLPD 301

Query: 468 DSLLFVDESHV 478
           D  + V E   
Sbjct: 302 DVTVVVHEPER 312



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 69/202 (34%), Gaps = 19/202 (9%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
             + +SATP    LE     I E     T    PP E     T V   +D      +  + 
Sbjct: 815  VLAMSATPIPRTLEMAVTGIREMSTLAT----PPEERHPVLTYVGGYDDKQVIAAVRREL 870

Query: 581  -QGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +  ++          E     + +     RVR  H  +   E  ++I D    +FDVL+
Sbjct: 871  LREGQVFYVHNKVETIESTAARIMDLVPEARVRVAHGRMNEHELEQVILDFWEKRFDVLI 930

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  GLD+     + +  +D  G  +    L Q  GR  R        +     K  
Sbjct: 931  STTIIETGLDVSNANTLIVERSDVMGLSQ----LHQLRGRVGRGRERAYAYFFFPPEKP- 985

Query: 698  QLAIDETTRRREKQLEHNKKHN 719
               + ET   R + +  N +  
Sbjct: 986  ---LTETAHERLQTIAANTELG 1004


>gi|257092702|ref|YP_003166343.1| transcription-repair coupling factor [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045226|gb|ACV34414.1| transcription-repair coupling factor [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1141

 Score =  130 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 125/354 (35%), Gaps = 53/354 (14%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQ---RPAI--VMAPNKILAAQLYSEFKNFFPH 219
            + E++ L    TGS     +A    A     RP +  V+  N   A +L  E       
Sbjct: 12  QAGERLHLPS-FTGSADALLIAHAASAASNGVRPRLLAVLTANAGDAQRLLQEI------ 64

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSV 278
                   ++  +     +P  +T      S +  +   R +   ++   +   ++V + 
Sbjct: 65  -------PWFAAHLRVRLLPDWETLPYDSFSPHHDLVSERLATLYAVTRGDCDVLLVPAS 117

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           + +Y +      +     LK G+ +  +   + L    Y      +  G + + G  +++
Sbjct: 118 TAVYRLSPAAYLAAYTFFLKQGEKLHSEPFRAQLTLAGYANVTQVVAPGEYSIRGGIVDL 177

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP     + +R+ +F N+IE I  F     + +  V  +++     +             
Sbjct: 178 FPM-GSPLPYRLDLFDNEIESIKTFDVDNQRTLYPVPEVRLLPAREFPLDD--------- 227

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
                + R    ++   + E      RI  D   +    +   IE +          E  
Sbjct: 228 -----RGRARFRQRFREIFEGDPARSRIYKD---VSNGVAAAGIEYWLPLFF-----EET 274

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQ-ISGMYRGDFHRKATLAEYGFR----LPSC 507
            TLF+Y+P+DS+L +   H  +P+ I   +R    R   L+  G R    LP  
Sbjct: 275 ATLFDYLPKDSVLCL---HRDVPEAIRAFWREAQSRYTMLS--GDRTHPLLPPA 323



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 12/122 (9%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
            M + L + L E  I V   H ++K  +   ++RD    + +VL+   ++  G+D P   
Sbjct: 822 NMRDKLGKLLPEARIVVG--HGQLKERDLERVMRDFTQRRANVLLCTTIIETGIDNPHAN 879

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR--EK 710
            + I  A+K G  +    L Q  GR  R+ +            ++        R+R    
Sbjct: 880 TIIINRAEKFGLAQ----LHQLRGRVGRSHHQAYAYLLTHDETALNKQ----ARQRLEAI 931

Query: 711 QL 712
           Q+
Sbjct: 932 QM 933


>gi|225873674|ref|YP_002755133.1| transcription-repair coupling factor [Acidobacterium capsulatum
           ATCC 51196]
 gi|225794589|gb|ACO34679.1| transcription-repair coupling factor [Acidobacterium capsulatum
           ATCC 51196]
          Length = 1189

 Score =  130 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 80/513 (15%), Positives = 177/513 (34%), Gaps = 59/513 (11%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A+  Q  + +      + + G+T + ++  +  +  A + P +++  +   A  ++   +
Sbjct: 17  ASFEQAQRHLSLSRGRRRVSGLTSTARSLYIPLLARAAKVPVVLLVADNKAADAMHLALR 76

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
                      ++     +    +P  D    +  S + ++   R +    +   +  IV
Sbjct: 77  AGCE-------LTGAIAAERVLKLPAHDVLPFENMSPHPEVQEQRATTLWKIATGDAAIV 129

Query: 275 VSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           ++ V +    +     Y  +   L+ G+ ++   LL+ L    Y++ D+  + G +   G
Sbjct: 130 IAPVEAAAMKLFPAPFYGGLAQVLRRGEEIDVDMLLTHLASVGYEQVDVVEMPGQYTRRG 189

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++++     D   R+  FG++IE + +F P + +    ++  ++   +        L 
Sbjct: 190 GILDVYSPEA-DRPVRMEFFGDEIETMRKFDPESQRSQSPLDEARLLPLTETPVT-ERLL 247

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS--RYLTG 451
            A+         RL      G   E          + EM+    +   +  +    +  G
Sbjct: 248 AAVHA-------RL-----SGARFE-------TNDEGEMVAEMVAAGGVSVFPGWEFFAG 288

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
                   TL +  P   +LFV+E  +   Q+   +     R    +      P   ++ 
Sbjct: 289 VAGANK--TLLDLFPR-CVLFVEEPGMIKNQVERWWNKVEQRHDRSSIGTLIRP---EDI 342

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA---RTQV 568
            LR E     R       + PG    +     ++E       +       R        +
Sbjct: 343 YLRPELLEAQRK------SHPGLDIDQLGAVDVLEDDETLGEIAFSS---RPTLRFHGSI 393

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR----VRYMHSEVKTLERIEI 624
               ++I    QQ  R+LL    +   E L   L E  +      R MH+  +T+     
Sbjct: 394 PAFVEQIKNLMQQETRMLLAAPNQGEVERLATLLREYELPYRLGSRVMHTGSETMYDEAS 453

Query: 625 IR--DLRLGKFDVLVGINLLREGLDIPECGLVA 655
               DLR      ++    +  G+ +P+  LV 
Sbjct: 454 HLGGDLRT----PIILRAPIATGVSLPDANLVV 482



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 17/200 (8%)

Query: 516 EEWNCLRPT--TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVED 570
           E    LR     + +SATP    L      + +  +    P   +     +     ++  
Sbjct: 779 ERLKQLRAQLDVLTMSATPIPRTLHMSLVGLRDMSVIETPPKDRMAIQTIVAKFDEKL-- 836

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDL 628
           V   + +  ++G +I           ++   + E     R    H ++   E  +++   
Sbjct: 837 VRSAVEVELERGGQIYFVHNRVETIYEIAAKIQELVPHARITVGHGQMGEAELEKVMLAF 896

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              ++DVLV  +++  GLDIP    + I  AD+ G       L Q  GR  R+       
Sbjct: 897 MNHEYDVLVATSIIENGLDIPLANTILINRADRHGLSE----LYQLRGRVGRSNRRAYAY 952

Query: 689 YADTITKSIQLAIDETTRRR 708
                 +     + E  RRR
Sbjct: 953 LMIPPEQE----LTEIARRR 968


>gi|11992016|gb|AAG42403.1|AF300471_6 Mfd protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 1145

 Score =  130 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 137/395 (34%), Gaps = 53/395 (13%)

Query: 231 YYQPEAYV---PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI---VVSSVSCIYGI 284
           Y+ PE  +   P  D      +S +  +   R +    L  R       + +  + +  +
Sbjct: 42  YFAPELKIISFPAWDCLPYDRASPSLPLSATRIATLHHLQTRPQSPELLITTVEAALQRL 101

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
            +     Q+   L  G  +++++L++ L    Y++ +     G + + G  ++++P+ L 
Sbjct: 102 LTPFRLRQLCQTLAAGVRLDREKLVTLLRAHGYQQSETVSQSGDYAIRGGLVDLWPAGL- 160

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
             A R+  FG++IE + +F P T +++  ++   +   S  +     +            
Sbjct: 161 PYALRLDFFGDEIETLRQFDPTTQRRLAEIDKFNLLPASEALLDAENIKRF--------- 211

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            R    E  G       L Q ++              +E++          E   TL+++
Sbjct: 212 -RSHYREIFGAAATTDPLYQAVS-------EGRRLAGMEHWLPLFE-----EKLVTLWDH 258

Query: 465 IPEDSLLFVDES--HVTIPQISGMYRGDFHRKATLA-EYGFRLPSCMDNRPLRFEEWNCL 521
           + E+  +F D++   V       +     HRK   + E G   P   D   L    W   
Sbjct: 259 LAEEDAVFYDQACLKVAEQHFEAIQDYYSHRKNPQSQESGSYRPLKPDLLYLDDSAWQER 318

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR----SARTQ----VEDVYD 573
                          + +   I    I     ++D    +       R Q     E V D
Sbjct: 319 LQ-------------ISKAHQITAFHIPPAPDVIDLESTLPRDFAPERQQGSNIYEAVVD 365

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
            I     Q  R+++   +K   E LT  L +  ++
Sbjct: 366 YIGALNNQNKRVIIACYSKGSRERLTGLLQDHGLK 400



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 13/189 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + E  +  T  VD    +RS     +   + + +     +
Sbjct: 746 HQLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLA-VRSYVMPWDPVAIREALLREHYR 804

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +  + V       DL ++L E+   +R++  H ++   E    +      KFDVL+  
Sbjct: 805 GGQSFIVVPRISDLADLEKFLSEQVPEIRFVIAHGQMAATEVENRMSAFYDKKFDVLLST 864

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD+ G  +    L Q  GR  R+           +  S   
Sbjct: 865 TIVESGLDIPSANTMIVYRADRFGLSQ----LYQIRGRVGRSKTRAYAYLTTPVNHS--- 917

Query: 700 AIDETTRRR 708
            I ET  +R
Sbjct: 918 -ISETAEKR 925


>gi|304391135|ref|ZP_07373087.1| transcription-repair coupling factor [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326018|gb|EFL93264.1| transcription-repair coupling factor [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 1165

 Score =  130 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 97/623 (15%), Positives = 194/623 (31%), Gaps = 81/623 (13%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
                L++G+ GS             +R  +V+AP+   A QL  E   +     VE F 
Sbjct: 33  GFYAPLIVGLPGS------------DERLTVVLAPSTRAATQLARELGAYTAG--VELFP 78

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
            + +    E   PRTDT   +  ++        H  T    +     +V  V       +
Sbjct: 79  DW-ETLPHERLSPRTDTMARRIWAL--------HRVTHPHPQDAVHFLVMPVRAALAPVN 129

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                  +  +++GD  ++  + + L++  Y+R D+   RG F V G  +++F S     
Sbjct: 130 AHIADYPLFTVQVGDPYDRDTMAADLLRLGYERVDMVGARGQFAVRGGLLDVF-SPTSAH 188

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
             R+ +FG++++ I  F     +    ++ T+   A    +        A       L  
Sbjct: 189 PVRIELFGDEVDTIRAFTASDQRTFGGDIRTLVAPACRELLLDDTARKLA-----ASLAG 243

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           ++ +  +   L                       + +E+ S  L     G     LF  +
Sbjct: 244 QMPQAAEILNLAA----------------EGKYGEGLESLSPLL-----GAEMVPLFSLL 282

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT 525
           P  + L   +     P++                  +   +     PL  E+ + L    
Sbjct: 283 PPGARLVATDR----PRLEARATELVETTQEFLAASWSAAAGGGEVPLEIEQASFLTLEQ 338

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
           +  +A            +    +      V   + +     +   +   I   A +   +
Sbjct: 339 LHAAAQEAHM---DTVFVSPFAVGENAQNVGAQIVMEPLAGETG-LIGTIGDLASKNWNV 394

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++T   K MA  L + L E ++  + +       +          G   + V    L EG
Sbjct: 395 VITTTGKGMASRLRDVLSEADVPAKVVKDATSQND----------GTVQITVAP--LDEG 442

Query: 646 LDIPECGLVAILDADKEGFLRSKTS---------LIQTIGRAARNVNSKVILYADTITKS 696
             +P   L+ + +A   G  +S+ +           + I          V+     I + 
Sbjct: 443 YQVPAAQLLVVSEAQVLGKKKSRHTADKANLPARRRKAIDPLTLTQGDYVVHLHHGIGRF 502

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID-AQQLSL 755
           ++LA     R RE   +        P        ++  P    D  +  +  +      +
Sbjct: 503 VKLAKRTMGRGRETTSKEYVVLEYAPSKRNGPADQLWVPTDSLDLLSKYVGGESPTLSKM 562

Query: 756 SKKKGKAHLKSLRKQMHLAADNL 778
                       RK +   A  L
Sbjct: 563 GGADWAKTKSKARKAVKEIAREL 585



 Score = 46.2 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 69/196 (35%), Gaps = 21/196 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV-----EDVYDEINLA 578
            + +SATP    LE          IR    +  P E R    T V     + V   I   
Sbjct: 768 VLTMSATPIPRTLEMAITG-----IRGMSTLTTPPEDRHPVLTYVGAYSDKQVAAAIRRE 822

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +  ++       +    +  +L E     RVR  H ++   +   ++ D    +FDVL
Sbjct: 823 LLRDGQVFFVHNRVQSINRIAAHLAELVPEARVRVGHGQMSEKQLESVMVDFWNQEFDVL 882

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  GLD+     + +  AD+ G  +    L Q  GR  R        +      +
Sbjct: 883 VSTTIVENGLDVTNANTIIVDRADRFGLSQ----LHQLRGRVGRGRERGYAYFLYPPGTT 938

Query: 697 IQLAIDETTRRREKQL 712
           +     ET   R K +
Sbjct: 939 MN----ETAFERLKTI 950


>gi|251792001|ref|YP_003006721.1| transcription-repair coupling factor [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533388|gb|ACS96634.1| transcription-repair coupling factor [Aggregatibacter aphrophilus
           NJ8700]
          Length = 1151

 Score =  130 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 55/330 (16%), Positives = 117/330 (35%), Gaps = 39/330 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +  ++L  +     +  ++++        +V+  +   A +L  E     P N       
Sbjct: 15  QDHKILANILPGADSLAVSEIAAQFNGLTVVVTNDTRSAVRLEKELAQLSPLNV------ 68

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGS 286
                    + P  +T      S ++ I   R SA   L +R   I +  ++ +   +  
Sbjct: 69  --------TFFPDWETLPYDSFSPHQDIISARLSALFHLQQRKQGIFILPIATLMQRVCP 120

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                  ++ +  GD    + L   L K  Y+  +  +  G + V G  +++FP     V
Sbjct: 121 PSYLQHRVLLINKGDRFVIETLRLQLEKSGYRAVEQVLEHGEYAVRGALLDLFPMGSA-V 179

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ I  F   T + ++ ++ I +     +    PT N  +++ + + +  
Sbjct: 180 PFRLDFFDDEIDSIRTFDVDTQRTLQEIDQINLLPAHEF----PTDNQGIEFFRSQFR-- 233

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
                +  R  E         +  + +        IE +          E   TLF+Y P
Sbjct: 234 -AAFGEIRRDPE---------HIYQQISKGTLAAGIEYWQPLFF-----EEMATLFDYFP 278

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
            ++L    E + T  Q    Y     R  +
Sbjct: 279 ANTLFITGEQNQT--QGERFYADAEQRFES 306



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 67/179 (37%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +++   + I     +G
Sbjct: 753 ILTLTATPIPRTLNMAMNGIRDLSIIST-PPARRLTIKTFVRQTDELVIREAILREILRG 811

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++  E   ++ D    +++VLV   
Sbjct: 812 GQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCST 871

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +  
Sbjct: 872 IIETGIDVPTANTIIIERADNFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKLMTK 926


>gi|254805085|ref|YP_003083306.1| transcription-repair coupling factor [Neisseria meningitidis
           alpha14]
 gi|254668627|emb|CBA06236.1| transcription-repair coupling factor [Neisseria meningitidis
           alpha14]
          Length = 1375

 Score =  130 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 71/412 (17%), Positives = 138/412 (33%), Gaps = 49/412 (11%)

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
           P+K L   L  + +          F   +D      ++P  +T   +  S ++ +   R 
Sbjct: 31  PHKQLKVVLTQDAEQALRLQTAWLFFRPHDT---AVFLPDWETLPYERFSPHQDLVSERL 87

Query: 261 SATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           SA   +     D + V   + +  +  V   +     LK G +++   L S LV   Y  
Sbjct: 88  SALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDAGYNH 147

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
               +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  I++
Sbjct: 148 VSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVSEIRL 206

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
                + T            +EE+                           + +      
Sbjct: 207 LPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVYKAVSNGHFG 249

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +E Y              TLF+YI ED+L     S   +   +  +  D   +  +A+
Sbjct: 250 AGVEYYLPLFFENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSDVKSRYAMAQ 302

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
                P               L P  + +SA   +  L+    ++ +   +   L D  V
Sbjct: 303 GDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGKEHALPDLAV 348

Query: 560 EIRSARTQVEDVYDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
                  Q ++    + +       RILL   +    E +  +L +  ++ +
Sbjct: 349 -----NRQSDEPLQALKDFQTAFEGRILLCAESLGRRETMLGFLQQNGLKAK 395



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 980  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLSVKTFVKPFSEGSV---REAVLRELK 1036

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 1037 RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 1094

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 1095 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1143

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1144 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1180

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1181 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1213


>gi|296283911|ref|ZP_06861909.1| transcription-repair coupling factor [Citromicrobium bathyomarinum
           JL354]
          Length = 1163

 Score =  130 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 62/317 (19%), Positives = 110/317 (34%), Gaps = 39/317 (12%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           L  I S ++      +    +   MA +  A  + A+ +AP+      +    + F P  
Sbjct: 4   LSRILSAKQPLTFANLARGSQPLVMADLARAAHKRAVFVAPDDSAMRAVADAARYFAPEL 63

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI---VVSS 277
           +V               +P  D      +S    I   R SA   L          V ++
Sbjct: 64  SVI-------------ELPAWDCLPYDRASPALSISTQRLSALHRLQAEKGAPQLLVTTA 110

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            + +  + +     + + +LK G  +  + L   L KQ Y R D  I  G F V G   +
Sbjct: 111 NAVVQRMLTPFRIREAVRELKPGVHIGHESLTQLLQKQGYSRTDTVIDAGEFAVRGSIFD 170

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFPS LE    R+  FG+++E +  F P T +    +++  +   S  +    T+     
Sbjct: 171 IFPSGLE-QGLRLDFFGDELESLRLFDPNTQRTTGTLDSFLLLPASEVLLEDATIKRF-- 227

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
                   R    E+ G       L        E +        +E++          E 
Sbjct: 228 --------RAGYRERFGANATQDPL-------YEAVSEGRRQAGMEHWLPLFE-----EK 267

Query: 458 PPTLFEYIPEDSLLFVD 474
             TLF+++     + +D
Sbjct: 268 LATLFDHLGTSDPVVID 284



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 75/191 (39%), Gaps = 13/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + ++ATP    L+     + E     T  VD    +R+   + +D+   + +     +
Sbjct: 756 HMLTLTATPIPRTLQMAMTGLRELSTIQTPPVDRLA-VRTYVIEWDDMVIREALLREHHR 814

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +  + V      + L ++L+E    V+ +  H ++   E  + +      K+DVL+  
Sbjct: 815 GGQSFIVVPRISDMDPLLDWLHEHVPEVKVVPAHGQMSASEVEDRMSAFYEKKYDVLLST 874

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDI     + I  AD+ G  +    L Q  GR  R            +T     
Sbjct: 875 TIVESGLDISSANTIIIHRADRFGLAQ----LYQLRGRVGRAKLRAYAY----LTTPADE 926

Query: 700 AIDETTRRREK 710
           A+ E   +R K
Sbjct: 927 ALSEVAEKRLK 937


>gi|319405678|emb|CBI79301.1| transcription repair coupling factor [Bartonella sp. AR 15-3]
          Length = 1166

 Score =  130 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 87/517 (16%), Positives = 172/517 (33%), Gaps = 92/517 (17%)

Query: 175 GVTGSGKTFTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           GV    + F +AK+   +   +P + +  +    A L        P+  V  F       
Sbjct: 21  GVVDGFEAFALAKLSAEIAQDKPLVYVVRDGTKMAYLQQALNFIEPNLPVLQF------- 73

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-----RNDCIVVSSVSCIYGIGSV 287
                 P  D       S    I   R SA   + +     R   I+ ++ + I  +   
Sbjct: 74  ------PAWDCLPYDRVSPGIAITARRLSALAHMSDLRKNPRCSIILTTANTIIQKLPPC 127

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDV 346
                 I+ +++G  ++   LL  L +  ++R       G F V G  I+IF PS+ E  
Sbjct: 128 AMIDDQIIHMRVGQCMDMINLLHYLERNGFERVATVRDVGEFAVRGGIIDIFSPSYTE-- 185

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  FG  +E I  F   T + I N   + +   S        ++             
Sbjct: 186 PFRLDFFGQTLETIRIFDTATQRTIANKTELFLQPMSEITLTPEFISRFKSN-------- 237

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY-- 464
              +   G   ++  L        E +        +E++  +       E   + F++  
Sbjct: 238 --YIRAFGAPKKSDML-------YEAVSQGRRFSGMEHWLPFFY-----ENLNSFFDHCG 283

Query: 465 -IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE---EWNC 520
            +P      ++E+ +              R   + +Y     S    R    E    ++ 
Sbjct: 284 SLPVVFEHLIEEALI-------------ERYRLIVDY----YSARKERESNQENDVSYHP 326

Query: 521 LRPTTIVVSATPGSWELEQCQGII------VEQIIRPTGL-------VDPPVEIR-SART 566
           ++P  +  +       +EQC   I      + Q ++ T +        D   E     + 
Sbjct: 327 IKPNLLYWTPEQVLTYIEQCGLRIDFTPFNISQTVKQTVIHTNATQGYDFIKERNAPDKN 386

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
               V + I      G +ILL   ++   + L + L E  ++   +   ++T++     R
Sbjct: 387 VFSSVVEHIASLRSSGKKILLAFWSEGSMDRLLQVLNEHGLQKVEITKSLQTVKATPRDR 446

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                   +L  + ++  G +I +   V I + D  G
Sbjct: 447 --------ILAAVLMIEHGFEIED--FVVIAEQDILG 473



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 95/275 (34%), Gaps = 46/275 (16%)

Query: 524  TTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
              + +SATP    L      + E       P   +     I      V  + + +     
Sbjct: 768  HVLTLSATPIPRTLSLALSGLRELSLITTPPIDRMAVRTFISPFDVMV--IRETLLREYY 825

Query: 581  QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
            +G +             + EYL      ++++  H ++   +  +I+     G+++VL+ 
Sbjct: 826  RGGQSFYVCPRISDLSYVEEYLKTHVPELKFIIAHGQMPAGQLDDIMNAFYDGQYNVLLS 885

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  GLDIP    + +  A+  G     ++L Q  GR  R+      L+     K + 
Sbjct: 886  TTIIESGLDIPTANTLIVHRAEMFGL----SALYQLRGRVGRSKQRAYALFTFPSGKVLL 941

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
               D    RR K                  +++ +D +       ++        +L  +
Sbjct: 942  PVAD----RRLK------------------VLQSLDTLGAGFQLASHDMDIRGSGNLLGE 979

Query: 759  KGKAHLK----SLRKQMHLAADNLNFEEA-ARIRD 788
            +   H+K     L ++M         EEA A ++D
Sbjct: 980  EQSGHIKEVGFELYQKML--------EEAVAELKD 1006


>gi|331089329|ref|ZP_08338230.1| hypothetical protein HMPREF1025_01813 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330405510|gb|EGG85042.1| hypothetical protein HMPREF1025_01813 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 712

 Score =  130 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 107/312 (34%), Gaps = 46/312 (14%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            ++ K       +  + G   + K   ++ +        +V+  N+  A + Y E     
Sbjct: 15  EEIRKNRTKENGMIQISGCVNTQKIHLLSGIGSGCGYK-LVVFSNEEKAKKAYEE----- 68

Query: 218 PHNAVEYFVSYYDYYQPEAYV-PRTDTYIEKESSINEQIDRMRHSATRSLLERND----C 272
                      Y  +  E Y+ P  D          + +   R    R++ E+       
Sbjct: 69  -----------YLLFGEETYLYPARDLLFYYADIKGKTLTNRRMEVLRAIAEKKKEEPVT 117

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++ +  + + GI S +   +  + +   D+V+  +L   L    Y+R+      G F V 
Sbjct: 118 VITTMDAFLDGIISPDEIQKNRIHITGEDTVDLTKLEQDLTALGYERESQIEAPGQFAVR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH-------- 384
           G  I++FP   E++  R+ ++G++I+ I  F   + + I N+  I IY  S         
Sbjct: 178 GGIIDVFP-LAEEMPVRIELWGDEIDSIRMFDAKSQRSIENISEITIYPASENCFGNNGL 236

Query: 385 --------------YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
                         +      L    + ++ E    L      G   E +  E R+    
Sbjct: 237 VSFLKYFPENETLLFYDEPHRLQETAETVEAEYTESLKNRADAGMKEEGEE-ELRVFQTK 295

Query: 431 EMLETTGSCQSI 442
           +++        I
Sbjct: 296 DIISEMNRYSGI 307



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 76/213 (35%), Gaps = 34/213 (15%)

Query: 459 PTLFEYIPED-SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
            +  +Y PE+ +LLF DE H        +           A+ G           ++ E 
Sbjct: 237 VSFLKYFPENETLLFYDEPHRLQETAETVEAEYTESLKNRADAG-----------MKEEG 285

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-------IRSARTQVED 570
              LR   +  +    S E+ +  GI +  +    GL             +       E 
Sbjct: 286 EEELR---VFQTKDIIS-EMNRYSGIGLTTLESKCGLFKVRSVYTVQAKGVNPYNNSFEL 341

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++    + G R++L   ++  A+ L E L + ++   Y           ++ R+++ 
Sbjct: 342 LTRDLKRLKRNGYRVVLLSGSRTRAKRLAEDLRDYDLSSFY---------SEDMQREVKP 392

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           G+  ++       EG + P    V I ++D  G
Sbjct: 393 GE--IMAAYGYASEGYEYPMLKFVVISESDIFG 423


>gi|206576037|ref|YP_002239264.1| transcription-repair coupling factor [Klebsiella pneumoniae 342]
 gi|206565095|gb|ACI06871.1| transcription-repair coupling factor [Klebsiella pneumoniae 342]
          Length = 1148

 Score =  130 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 112/297 (37%), Gaps = 35/297 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TG+     +A++ E  + P +++AP+   A +L  E +  F  + V     + +    +
Sbjct: 22  LTGAACATLVAEMAERHKGPVVLVAPDMQNALRLNDEIRQ-FTDSMVMGLADW-ETLPYD 79

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           ++ P  D    + +++ +     R             ++V   + +  +          +
Sbjct: 80  SFSPHQDIISSRLATLYQLPTMQR-----------GVLIVPVSTLMQRVCPHSFLHGHAL 128

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K G  + +  L   L    Y+  D  +  G +   G  +++FP    D  +R+  F +
Sbjct: 129 VMKKGQRLSRDALRDQLEGAGYRHVDQVMEHGEYATRGALLDLFPM-GSDQPYRLDFFDD 187

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ +  F   + + +  V  I +     +    PT  TA++  + + + R         
Sbjct: 188 EIDSLRLFDVDSQRTLEEVAAINLLPAHEF----PTDQTAIELFRSQWRDR--------- 234

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             E +R  + I    + +        IE +          EP P LF Y P  +L+ 
Sbjct: 235 -FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYFPASTLIV 283



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDALV--VREAILRETLR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          +   + L E     R    H +++  E   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLFNDVENIQKAADKLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|288936122|ref|YP_003440181.1| transcription-repair coupling factor [Klebsiella variicola At-22]
 gi|288890831|gb|ADC59149.1| transcription-repair coupling factor [Klebsiella variicola At-22]
          Length = 1148

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 112/297 (37%), Gaps = 35/297 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TG+     +A++ E  + P +++AP+   A +L  E +  F  + V     + +    +
Sbjct: 22  LTGAACATLVAEMAERHKGPVVLVAPDMQNALRLNDEIRQ-FTDSMVMGLADW-ETLPYD 79

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           ++ P  D    + +++ +     R             ++V   + +  +          +
Sbjct: 80  SFSPHQDIISSRLATLYQLPTMQR-----------GVLIVPVSTLMQRVCPHSFLHGHAL 128

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K G  + +  L   L    Y+  D  +  G +   G  +++FP    D  +R+  F +
Sbjct: 129 VMKKGQRLSRDALRDQLEGAGYRHVDQVMEHGEYATRGALLDLFPM-GSDQPYRLDFFDD 187

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ +  F   + + +  V  I +     +    PT  TA++  + + + R         
Sbjct: 188 EIDSLRLFDVDSQRTLEEVAAINLLPAHEF----PTDQTAIELFRSQWRDR--------- 234

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             E +R  + I    + +        IE +          EP P LF Y P  +L+ 
Sbjct: 235 -FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYFPASTLIV 283



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDALV--VREAILRETLR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          +   + L E     R    H +++  E   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLFNDVENIQKAADKLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|300023171|ref|YP_003755782.1| transcription-repair coupling factor [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524992|gb|ADJ23461.1| transcription-repair coupling factor [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 1161

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 78/516 (15%), Positives = 156/516 (30%), Gaps = 70/516 (13%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           DQ      +  G+      ++L  +T + +               + +  +     +L +
Sbjct: 3   DQVQTSRVIFSGVPEGFDGRVLADITRAARG-------GDQPGLHLHVVRDDRRLEELQA 55

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL---E 268
               F P  AV  F             P  DT     +S N +I   R +    L     
Sbjct: 56  AVAFFAPDIAVVPF-------------PAWDTVPYDRTSPNAEIVARRITTLGRLAIGGR 102

Query: 269 RNDCIVVSSVSCIYGIGSVESY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
           +   +V+++V+ I       S+    +  +  G  ++  EL+  L    Y R    +  G
Sbjct: 103 KKPTLVLTTVNAILQRVPPRSFIRGAVKTIAPGQRIDPAELIRRLESYGYDRSSTVMEPG 162

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            +   G  ++++P    +   R+  FG+ +E +  F   T + ++ V    +   S    
Sbjct: 163 EYAQRGGILDLYPPGRSN-PIRLDFFGDTLESVKAFDAETQRSMKPVPKFSLMPVSEVAF 221

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
                             R   +   G       L        E + +    Q  E++  
Sbjct: 222 GEAATALF----------RTRYVALFGGNTGDDPL-------YEAVSSGRRYQGQEHWLP 264

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY--GFRL- 504
           +           TLF+Y+P    + +   H+    +   +           +   G R  
Sbjct: 265 FFHPALE-----TLFDYLPG---VGISFDHMADEAVKRRFEQVREHYEARVDSLEGQRFG 316

Query: 505 -----PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
                P   D   +  ++W        V   TP     +      V Q+    G      
Sbjct: 317 APPYKPVPPDQMFIDGKDWASALDARTVSRLTP----FDDPGTSNVYQMKGRRGRTFAAE 372

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
                    + V   I        R++L   T    E L   L +  ++      + + +
Sbjct: 373 RADPDNNVFDAVVGHIRRIHADSRRVILAAWTTGARERLITLLADHGLK------DAEKV 426

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E    ++ L+       V    + EG + P+  ++A
Sbjct: 427 ESFTEVQALKPNATAFAVFG--IEEGFETPDFAVIA 460



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 68/176 (38%), Gaps = 9/176 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ-- 581
             + +SATP    L+     + E  +  T  VD    +R+  +  + V  +  L  ++  
Sbjct: 761 HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFISPFDPVILKEALRRERFR 819

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +           +D+ E+L E    + +     ++   E  +++     GK+D+L+  
Sbjct: 820 GGQTYYVAPRISDLDDIAEFLREAVPDLVFARATGQMSPTELEDVMTAFYEGKYDILLST 879

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            ++  GLD+P    + +  AD  G  +    L Q  GR  R+             K
Sbjct: 880 AIVESGLDVPNANTLIVHRADMFGLAQ----LYQLRGRVGRSKTRAYAYITTPPDK 931


>gi|329850695|ref|ZP_08265540.1| transcription-repair coupling factor [Asticcacaulis biprosthecum
           C19]
 gi|328841010|gb|EGF90581.1| transcription-repair coupling factor [Asticcacaulis biprosthecum
           C19]
          Length = 1161

 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 77/468 (16%), Positives = 153/468 (32%), Gaps = 60/468 (12%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           L  I  R     L G     ++   A +       ++ +A +      +    K F P  
Sbjct: 4   LSEITGRASSLTLSGSPEGYESLVAADL-ARAGGVSVFIARDFGRMNAVAEALKFFAPEL 62

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
            +  F ++ D    +   P      ++  ++++       SA R        + +++ S 
Sbjct: 63  DILSFPAW-DCLPYDRLSPTPGVIAQRMYALSQ------LSAYRDKRPEKPVLFLTTASA 115

Query: 281 IYGIGSVESYSQM-IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
           +       S      + LK G +++  +L +  V   Y R      RG F V G  +++F
Sbjct: 116 MAQRVPPRSIVDQGRLSLKPGLTIDMTDLDAYFVNNGYTRVSTVAERGEFAVRGGLVDVF 175

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P   ++   R+  FG+ +E I  F P T + ++ +  +   A S       +++   +  
Sbjct: 176 PPSADE-PVRLDFFGDSLESIRSFDPETQRSLKQISQLNFTAVSEIRMDTDSISRFRQG- 233

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
                  L      G                  L +    Q +E+               
Sbjct: 234 ------YLAAFGAAGD-----------DPVYAALSSGIRRQGVEHMLPLFYDHL-----D 271

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE-YGFRLPSCMDNRPLRFEEW 518
           ++F+Y+P  SL+ +D         +        R  T+ + Y  R+ +  D     +   
Sbjct: 272 SVFDYLPPLSLVMLD---------ALAGNAFAERADTVRDAYELRVAAMKDKGGSAY--- 319

Query: 519 NCLRPTTIVVSATPGSWE----------LEQCQGIIVEQIIRPTGLVDPPVEIR--SART 566
             + P  + +    G W+           E  +G  V+ I           E R   +  
Sbjct: 320 RAIAPQRLYL--DDGQWKAALGAHRVRRFEPFEGEAVDAIDLGGRSGRNFAEARKLDSVN 377

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
               V D     A+QG R++    T   ++ L   L +  +    + S
Sbjct: 378 LFTTVADHAQALAKQGKRVIFASWTDGSSDRLAAMLADHGLTSPRLAS 425



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 77/191 (40%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + +SATP    L+     I +  I  T  VD  + +R+     +   + + +     +
Sbjct: 763 HMMALSATPIPRTLQMALSGIRDMSIIATPPVD-RIAVRTYVLPYDPVALREALLREKYR 821

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       D+ ++L  +   +R++  H ++      +++     G++DVL+  
Sbjct: 822 GGQAYYVVPRLSDLPDVADFLRVQVPEIRFVIGHGQLSPTALEDVMTAFYEGQYDVLLST 881

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLD+P    + +  AD  G  +    L Q  GR  R+             +++ +
Sbjct: 882 TIVESGLDVPTANTLIVHRADMFGLAQ----LYQIRGRVGRSKTRAFAYLTTPQHRTLSV 937

Query: 700 AIDETTRRREK 710
           A   + +R + 
Sbjct: 938 A---SEKRLKV 945


>gi|84687524|ref|ZP_01015400.1| transcription-repair coupling factor [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664433|gb|EAQ10921.1| transcription-repair coupling factor [Rhodobacterales bacterium
           HTCC2654]
          Length = 1153

 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 82/502 (16%), Positives = 164/502 (32%), Gaps = 56/502 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
                L G         +++ +E    P + +A +    A + +    F P   V  F  
Sbjct: 4   RDHITLSGAPEGFDALLVSRELEKSGGPVVHVARDDKRLAAMRAALGFFAPEVTVLTFPG 63

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
           + D    +   P  D    + ++          +A    +     ++ +  +    + + 
Sbjct: 64  W-DCLPFDRVSPNADVSAARMAT---------LAALAHGMPGPFILLTTLNAATQRVPAR 113

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           E  ++      +   ++   L + LV+  + +       G F V G  I+IFP   E   
Sbjct: 114 EVLAEASWSATVDSRIDVDGLRAFLVRMGFAQAPTVTEPGDFAVRGGIIDIFPP-GEAGP 172

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+ +FG+ ++    F P++      +  I++   S  +     +    +  + E     
Sbjct: 173 VRLDLFGDVLDGARRFDPVSQMTTETLSAIELAPVSEIIMDEAAIARFRQNYRVE----- 227

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                 G                E +        +E++  +       E   TLF+Y+P 
Sbjct: 228 --FGAGGSD----------DPLYEAVSAGRKHSGMEHWLPFFH-----EKLETLFDYLPG 270

Query: 468 DSLLFVDESHV-TIPQISGMYRGDFHRKATLAEYGFRL-----PSCMDNRPLRFEEWNCL 521
            S++  D++    I +  G+      R+A + +   RL     P   D   L  + W   
Sbjct: 271 ASVMLDDQTGPARIARWEGIADQYDTRRAAMRDK-NRLDTVYKPCPPDLLYLDEDAWTAA 329

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
                 +  T    EL +  G  V       G    P   +      E +   I     +
Sbjct: 330 LAEMRAIQLT----ELPRQTGPGVVDGGGRIGRNFAPERQQEKINLFEVLAAHIRARRDE 385

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G  +++   ++   E L   L +          ++     I   RD+  GK  + + +  
Sbjct: 386 GP-VVVASYSEGARERLGGLLSDE---------DLTAQTEITDFRDVVAGKGGLYLAVWP 435

Query: 642 LREGLDIPECGLVAILDADKEG 663
           L  G + P  GL  I + D  G
Sbjct: 436 LEHGFEAP--GLTVISEQDVLG 455



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 69/178 (38%), Gaps = 9/178 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + +SATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 748 HVLTLSATPIPRTLQMSLTGVRDLSIIGTPPVDRL-SIRTYVSEFDTVTIREALLREHYR 806

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMH--SEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +  + V   +   ++ E+L  +   V ++    ++   E    +     GKFDVLV  
Sbjct: 807 GGQSFVVVPRVKDLREIEEFLETQVPEVSFVTANGQMAAGELDHRMNAFYDGKFDVLVAT 866

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+               +
Sbjct: 867 TIVESGLDIPTANTMVVWRADMFGLAQ----LYQIRGRVGRSKTRAYCYLTTKPRVPL 920



 Score = 42.8 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 13/131 (9%)

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169
           + ++  L K   +  PH +       +    F     Y  + DQ +AIA +++ + +   
Sbjct: 569 LAAERSLRKAPVMEAPHHA-----WEEFAARF----PYTETDDQLSAIADVIEDMSAGSP 619

Query: 170 -VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
             +L+ G  G GKT      A V     +   V+AP  +LA Q Y  F   F    ++  
Sbjct: 620 MDRLICGDVGFGKTEVAMRAAFVAALSGKQVAVIAPTTLLARQHYKSFAERFRGFPIQVS 679

Query: 226 VSYYDYYQPEA 236
                  Q EA
Sbjct: 680 QLSRFVSQGEA 690


>gi|259416898|ref|ZP_05740818.1| transcription-repair coupling factor [Silicibacter sp. TrichCH4B]
 gi|259348337|gb|EEW60114.1| transcription-repair coupling factor [Silicibacter sp. TrichCH4B]
          Length = 1151

 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 120/351 (34%), Gaps = 41/351 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           ++  ++ G         + K +    +P + +A +      + S  + F P   V  F  
Sbjct: 3   QQSVVMGGAPEGFDARLVLKEMTRGGKPVLHIARDDKRMEAMRSALRFFAPDVPVVIF-- 60

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL---LERNDCIVVSSVSCIYGI 284
                      P  D       S N  I   R +   +L   L +   ++ +  + +  +
Sbjct: 61  -----------PGWDCLPYDRVSPNADISAARMATLAALVHGLPQQFILLTTLNAAMQRV 109

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
            + E   +     ++   +++  L   LV+  + +    +  G + V G  I+IFP   E
Sbjct: 110 PAREVLKEAAFSARVNSRIDEDALRKFLVRMGFSQSPTVMEPGDYAVRGGIIDIFPP-GE 168

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
               R+ +FG+ ++    F P T +    ++ +++   S  +     +    +  + E  
Sbjct: 169 SGPVRLDLFGDTLDGARRFDPATQRTTEKLDLVELAPVSEVILDEAAITRFRQNYRIE-- 226

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                    G                E +      Q +E++  +       E   TLF+Y
Sbjct: 227 -----FGAAGSD----------DPLYEAVSAGRKHQGMEHWLPFFH-----ERLETLFDY 266

Query: 465 IPEDSLLFVDE-SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
           +P  ++   D+ +   + +   +      RK  +   G R+ S     P +
Sbjct: 267 LPGATVTLDDQLTPARVARWDSIVDQYETRKIAMDTKG-RMDSVYKPTPPK 316



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 12/188 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  T+ +   + + +     +
Sbjct: 745 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA-IRTYVTEFDAITIREALLREHYR 803

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++  +L ++   + Y+  + ++   E  + +     GK+DVL+  
Sbjct: 804 GGQSFYVVPRISDLPEIEAFLQDQLPELSYVVANGQMAAGELDDRMNAFYDGKYDVLLAT 863

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK   YA   TK  Q 
Sbjct: 864 TIVESGLDIPTANTMVVHRADMFGLAQ----LYQIRGRVGR---SKTRAYAYLTTKPRQK 916

Query: 700 AIDETTRR 707
             D   +R
Sbjct: 917 LTDSAEKR 924



 Score = 40.8 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 20/137 (14%)

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169
           I ++  L K   +  P      +   +    F     Y  + DQ  AI  ++  ++S + 
Sbjct: 566 IAAERALRKAPAMDPP-----PHAWEEFSARF----PYQETDDQLRAIEDVMSDLNSGQP 616

Query: 170 -VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
             +L+ G  G GKT      A V         ++AP  +LA Q  + FK  F        
Sbjct: 617 MDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAIVAPTTLLARQHAAGFKERFRG------ 670

Query: 226 VSYYDYYQPEAYVPRTD 242
               +  Q   +VP  +
Sbjct: 671 -FPLEVRQLSRFVPAKE 686


>gi|226307788|ref|YP_002767748.1| transcription-repair coupling factor [Rhodococcus erythropolis PR4]
 gi|226186905|dbj|BAH35009.1| transcription-repair coupling factor [Rhodococcus erythropolis PR4]
          Length = 1229

 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 81/217 (37%), Gaps = 12/217 (5%)

Query: 180 GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239
            + F  A +      P +++      A  L SE         V  F S+ +    E   P
Sbjct: 65  ARPFIAAALAART--PVLLVTATGREADDLTSELTEMLGG-GVAQFPSW-ETLPHERLSP 120

Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
             DT   +     E + R+      S       ++V++V  +    +        + L++
Sbjct: 121 SADTVGRRV----EVLRRLARPDDAS-YGSPLRVIVTTVRSLVQPMAPGLGEIEPITLRV 175

Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359
           G  ++   +L  LV+  Y R D+   RG F V G  +++F S   D   R+  +G+++ E
Sbjct: 176 GTEIDFDSVLVRLVEMAYSRVDMVGKRGEFAVRGGILDLF-SPTADHPVRIEFWGDEVSE 234

Query: 360 ISEFYPLTGQKI--RNVETIKIYANSHYVTPRPTLNT 394
           +  F     + +   +V+++        +      + 
Sbjct: 235 LRYFSVADQRSLPDVDVDSVIAPPCRELILTADVRDR 271



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
             + +SATP    LE     I E     + ++ PP E     T V     + V   I    
Sbjct: 819  VLTMSATPIPRTLEMSMAGIREM----STILTPPEERHPILTYVGAYADKQVAAAIRREL 874

Query: 580  QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
             +  ++          +   + + E     R +  H ++      + ++      FDVLV
Sbjct: 875  LRDGQVFYVHNRVSSIDKAAKKIRELVPEARVVVAHGQMNEDTLEKTVQGFWERDFDVLV 934

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  GLDI     + +  AD  G  +    L Q  GR  R+       +     K  
Sbjct: 935  CTTIIETGLDISNANTLIVERADSLGLSQ----LHQLRGRVGRSRERGYAYFLYPAEKP- 989

Query: 698  QLAIDETTRRREKQLEHNKKHN 719
               + ET   R   +  N    
Sbjct: 990  ---LTETAYDRLATISQNSDLG 1008



 Score = 44.3 bits (103), Expect = 0.082,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 63/155 (40%), Gaps = 15/155 (9%)

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           +        V+S      E       +   +I   G     + +R+A   V+D       
Sbjct: 667 FTETIDQLTVISEVKADME---KPVPMDRVVIGDVGYGKTEIAVRAAFKAVQD------- 716

Query: 578 AAQQGLRILL--TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              + + +L+  T+L ++  +  TE +    ++VR +       +  EII  +  G+ D+
Sbjct: 717 --GKQVAVLVPTTLLAQQHLQTFTERMASFPVKVRGLSRFTDAKDSKEIIAGMAEGEIDI 774

Query: 636 LVGIN-LLREGLDIPECGLVAILDADKEGFLRSKT 669
           +VG + LL+ G+   + GLV + +  + G    + 
Sbjct: 775 VVGTHRLLQTGIRWKDLGLVIVDEEQRFGVEHKEH 809


>gi|224282806|ref|ZP_03646128.1| transcription-repair coupling factor [Bifidobacterium bifidum NCIMB
           41171]
 gi|313139965|ref|ZP_07802158.1| transcription-repair coupling factor [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132475|gb|EFR50092.1| transcription-repair coupling factor [Bifidobacterium bifidum NCIMB
           41171]
          Length = 1199

 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 96/260 (36%), Gaps = 24/260 (9%)

Query: 152 DQPAAIAQLLKG---IHSREK--VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206
           D+  A  +L+ G   I   +     + +G     +    A   E    P +++  +   A
Sbjct: 37  DEDPAFHRLVSGGMSIADGKDIAPIITVGTPDGLRPAIAAAQAEHT--PVVLVVASSREA 94

Query: 207 AQLYSEFKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
               +  ++++  +  +      ++    E   PR DT   + +       R+ H +  +
Sbjct: 95  EDTVNALRSWYGGDPNDIAQLEAWETLPHERLSPRADTVASRMAVF----RRLTHPSDTN 150

Query: 266 LLERNDCIVVSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            +     I+V  V  +      G+G V+           G+ +   ++   LV+  Y R 
Sbjct: 151 PMFGPIRILVMPVRSLIQPVVKGLGDVDPLV-----FTQGEELPLDDVSRRLVENAYTRV 205

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIKI 379
           D+ + RG F V G  I++FP        R+  FG++I+ I EF+    +     V TI  
Sbjct: 206 DLVMDRGEFAVRGGIIDVFPP-TAPHPVRIEFFGDEIDSIREFHASDQRTYGEGVRTIWA 264

Query: 380 YANSHYVTPRPTLNTAMKYI 399
                        + A + I
Sbjct: 265 TPCRELQLTDAVRDRAKRLI 284



 Score = 42.4 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 61/177 (34%), Gaps = 9/177 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 799 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAVRRELLRG 857

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +        ++E     R    H ++   +   +IRD      DVLV   
Sbjct: 858 GQVFYVHNRVQDIAKTAAKIHELVPEARVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTT 917

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    +K +
Sbjct: 918 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPSKPM 970


>gi|290510825|ref|ZP_06550195.1| transcription-repair coupling factor [Klebsiella sp. 1_1_55]
 gi|289777541|gb|EFD85539.1| transcription-repair coupling factor [Klebsiella sp. 1_1_55]
          Length = 1148

 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 113/297 (38%), Gaps = 35/297 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TG+     +A++ E  + P +++AP+   A +L  E +  F  + V     + +    +
Sbjct: 22  LTGAACATLVAEMAERHKGPVVLVAPDMQNALRLNDEIRQ-FTDSMVMGLADW-ETLPYD 79

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           ++ P  D    + +++ +     R             ++V   + +  +          +
Sbjct: 80  SFSPHQDIISSRLATLYQLPTMQR-----------GVLIVPVSTLMQRVCPHSFLHGHAL 128

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K G S+ +  L   L    Y+  D  +  G +   G  +++FP    D  +R+  F +
Sbjct: 129 VMKKGQSLSRDALRDQLEGAGYRHVDQVMEHGEYATRGALLDLFPM-GSDQPYRLDFFDD 187

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ +  F   + + +  V  I +     +    PT  TA++  + + + R         
Sbjct: 188 EIDSLRLFDVDSQRTLEEVAAINLLPAHEF----PTDQTAIELFRSQWRDR--------- 234

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             E +R  + I    + +        IE +          EP P LF Y P  +L+ 
Sbjct: 235 -FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYFPASTLIV 283



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDALV--VREAILRETLR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          +   + L E     R    H +++  E   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLFNDVENIQKAADKLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|310287260|ref|YP_003938518.1| transcription-repair coupling factor (superfamily II helicase)
           [Bifidobacterium bifidum S17]
 gi|309251196|gb|ADO52944.1| Transcription-repair coupling factor (superfamily II helicase)
           [Bifidobacterium bifidum S17]
          Length = 1199

 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 96/260 (36%), Gaps = 24/260 (9%)

Query: 152 DQPAAIAQLLKG---IHSREK--VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206
           D+  A  +L+ G   I   +     + +G     +    A   E    P +++  +   A
Sbjct: 37  DEDPAFHRLVSGGMSIADGKDIAPIITVGAPDGLRPAIAAAQAEHT--PVVLVVASSREA 94

Query: 207 AQLYSEFKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
               +  ++++  +  +      ++    E   PR DT   + +       R+ H +  +
Sbjct: 95  EDTVNALRSWYDGDPNDIAQLEAWETLPHERLSPRADTVASRMAVF----RRLTHPSDTN 150

Query: 266 LLERNDCIVVSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            +     I+V  V  +      G+G V+           G+ +   ++   LV+  Y R 
Sbjct: 151 PMFGPIRILVMPVRSLIQPVVKGLGDVDPLV-----FTQGEELPLDDVSRRLVENAYTRV 205

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIKI 379
           D+ + RG F V G  I++FP        R+  FG++I+ I EF+    +     V TI  
Sbjct: 206 DLVMDRGEFAVRGGIIDVFPP-TAPHPVRIEFFGDEIDSIREFHASDQRTYGEGVRTIWA 264

Query: 380 YANSHYVTPRPTLNTAMKYI 399
                        + A + I
Sbjct: 265 TPCRELQLTDAVRDRAKRLI 284



 Score = 42.4 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 61/177 (34%), Gaps = 9/177 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 799 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAVRRELLRG 857

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +        ++E     R    H ++   +   +IRD      DVLV   
Sbjct: 858 GQVFYVHNRVQDIAKTAAKIHELVPEARVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTT 917

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    +K +
Sbjct: 918 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPSKPM 970


>gi|315634772|ref|ZP_07890054.1| transcription-repair coupling factor [Aggregatibacter segnis ATCC
           33393]
 gi|315476324|gb|EFU67074.1| transcription-repair coupling factor [Aggregatibacter segnis ATCC
           33393]
          Length = 1149

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/330 (16%), Positives = 117/330 (35%), Gaps = 39/330 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +  ++L  +     +  ++++        +V+  +   A +L  E     P N       
Sbjct: 15  QDHKILANILPGADSLAVSEIAAQFNGLTVVVTNDTRSAVRLEKELAQLSPLNV------ 68

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGS 286
                    + P  +T      S ++ I   R SA   L +R   I +  ++ +   +  
Sbjct: 69  --------TFFPDWETLPYDSFSPHQDIISARLSALFHLQQRKQGIFILPIATLMQRVCP 120

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                  ++ +  GD    + L   L K  Y+  +  +  G + V G  +++FP     V
Sbjct: 121 PSYLQHRVLLINKGDRFVIETLRLQLEKSGYRAVEQVLEHGEYAVRGALLDLFPMGSA-V 179

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ I  F   T + ++ ++ I +     +    PT N  +++ + + +  
Sbjct: 180 PFRLDFFDDEIDSIRIFDVDTQRTLQEIDQINLLPAHEF----PTDNQGIEFFRSQFR-- 233

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
                +  R  E         +  + +        IE +          E   TLF+Y P
Sbjct: 234 -AAFGEIRRDPE---------HIYQQISKGTLAAGIEYWQPLFF-----EKMATLFDYFP 278

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
            ++L    E + T  Q    Y     R  +
Sbjct: 279 ANTLFITGEQNQT--QGERFYADAEQRFES 306



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 67/179 (37%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +++   + I     +G
Sbjct: 753 ILTLTATPIPRTLNMAMNGIRDLSIIST-PPARRLTIKTFVRQTDELVIREAILREILRG 811

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++  E   ++ D    +++VLV   
Sbjct: 812 GQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCST 871

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +  
Sbjct: 872 IIETGIDVPTANTIIIERADNFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKLMTK 926


>gi|153814527|ref|ZP_01967195.1| hypothetical protein RUMTOR_00741 [Ruminococcus torques ATCC 27756]
 gi|317500570|ref|ZP_07958791.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|145848021|gb|EDK24939.1| hypothetical protein RUMTOR_00741 [Ruminococcus torques ATCC 27756]
 gi|316898003|gb|EFV20053.1| transcription-repair coupling factor [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 1115

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 107/312 (34%), Gaps = 46/312 (14%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            ++ K       +  + G   + K   ++ +        +V+  N+  A + Y E     
Sbjct: 15  EEIRKNRTKENGMIQISGCVNTQKIHLLSGIGSGCGYK-LVVFSNEEKAKKAYEE----- 68

Query: 218 PHNAVEYFVSYYDYYQPEAYV-PRTDTYIEKESSINEQIDRMRHSATRSLLERND----C 272
                      Y  +  E Y+ P  D          + +   R    R++ E+       
Sbjct: 69  -----------YLLFGEETYLYPARDLLFYYADIKGKTLTNRRMEVLRAIAEKKKEEPVT 117

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           ++ +  + + GI S +   +  + +   D+V+  +L   L    Y+R+      G F V 
Sbjct: 118 VITTMDAFLDGIISPDEIQKNRIHITGEDTVDLTKLEQDLTALGYERESQIEAPGQFAVR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH-------- 384
           G  I++FP   E++  R+ ++G++I+ I  F   + + I N+  I IY  S         
Sbjct: 178 GGIIDVFPL-AEEMPVRIELWGDEIDSIRMFDAKSQRSIENISEITIYPASENCFGNNGL 236

Query: 385 --------------YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
                         +      L    + ++ E    L      G   E +  E R+    
Sbjct: 237 VSFLKYFPENETLLFYDEPHRLQETAETVEAEYTESLKNRADAGMKEEGEE-ELRVFQTK 295

Query: 431 EMLETTGSCQSI 442
           +++        I
Sbjct: 296 DIISEMNRYSGI 307



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 76/213 (35%), Gaps = 34/213 (15%)

Query: 459 PTLFEYIPED-SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
            +  +Y PE+ +LLF DE H        +           A+ G           ++ E 
Sbjct: 237 VSFLKYFPENETLLFYDEPHRLQETAETVEAEYTESLKNRADAG-----------MKEEG 285

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-------IRSARTQVED 570
              LR   +  +    S E+ +  GI +  +    GL             +       E 
Sbjct: 286 EEELR---VFQTKDIIS-EMNRYSGIGLTTLESKCGLFKVRSVYTVQAKGVNPYNNSFEL 341

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++    + G R++L   ++  A+ L E L + ++   Y           ++ R+++ 
Sbjct: 342 LTRDLKRLKRNGYRVVLLSGSRTRAKRLAEDLRDYDLSSFY---------SEDMQREVKP 392

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           G+  ++       EG + P    V I ++D  G
Sbjct: 393 GE--IMAAYGYASEGYEYPMLKFVVISESDIFG 423



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 16/190 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I +  +    L + P E    +T V     E V + I    
Sbjct: 719 VLTLTATPIPRTLHMSLIGIRDMSV----LEEAPNERMPIQTYVMEYNDEMVREAITREL 774

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++           D+   +     +  V + H ++K  E  +I+ D   G  DVLV
Sbjct: 775 ARDGQVYYVYNRVNDIADVAGRIQSLVPDANVAFAHGQMKERELEDIMYDFINGDIDVLV 834

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DAD+ G L     L   +GR+ R   + ++   D + K +
Sbjct: 835 STTIIETGLDIPNANTMIIQDADRFG-LSQLYQLRGRVGRSNRMAYAFLLYQRDKLLKEV 893

Query: 698 QL----AIDE 703
                 AI E
Sbjct: 894 AEKRLSAIRE 903


>gi|320527116|ref|ZP_08028303.1| transcription-repair coupling factor [Solobacterium moorei F0204]
 gi|320132444|gb|EFW24987.1| transcription-repair coupling factor [Solobacterium moorei F0204]
          Length = 1130

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 111/341 (32%), Gaps = 41/341 (12%)

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
              +A   +   RP +V+  N   A +LY              F                
Sbjct: 26  ALVIATSFQKRPRPILVVKQNLYTAQRLYERIATLIDEKDCALFG-------------AD 72

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS-SVSCIYGIGSVESYSQMIVQLKIG 300
           ++   +  + + ++   +      LL   + +V++   + +  +   E +    + ++ G
Sbjct: 73  ESLRVEAIASSPELTAQKVETLAGLLSNPNQVVITCPSALLRQLPFPEDFKACCITIQTG 132

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           D+++       L+   Y++        TF   G  ++++  +  D   R+  F  ++E I
Sbjct: 133 DTLDMHAFKQKLLSGGYQKTSHIDQPLTFAARGGIVDVYSINY-DSPIRIEFFDTEVESI 191

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
             F   T + +  ++ + I            +       +E        L KE + +   
Sbjct: 192 RFFDVATQKTVEKIDAVTIIPAGDVFFTDEQIEEICSKSEE-------VLSKENKPI--- 241

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
            L   I  DL  L        + +Y   L+          +++Y+ ++ L+   +  + +
Sbjct: 242 -LAAEIESDLHALREKVFSSHMYSYMSLLS------KTAGIWDYM-QNPLIVYSDEQLIL 293

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
                +          L +    LP        +F  W+ +
Sbjct: 294 DSAKKLNEETVSYIQELVQEEKMLP--------KFAMWHDI 326



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L+    GI    ++    L    V+          + D I     +  
Sbjct: 733 VLSLSATPIPRTLQMSLVGIRSLSLLETPPLNRYSVQTYVVEKDKNLIRDAIQKELSRNG 792

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++           ++   +       R   +H ++  +E  +I++     + D+LV   +
Sbjct: 793 QVFYLHNNIDQIYNIARNIQSLVPESRVGIVHGKLGKVEIEDIMQRFIEKELDILVCTTI 852

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + +A   G  +      Q  GR  R+                +  +
Sbjct: 853 VENGIDIPNVNTILVDNAQDFGLAQIY----QIKGRVGRSDRLAYAYLLIPP----RRQL 904

Query: 702 DETTRRR 708
            E  ++R
Sbjct: 905 SEVAQKR 911


>gi|126664951|ref|ZP_01735934.1| transcription-repair coupling protein Mfd [Marinobacter sp. ELB17]
 gi|126630321|gb|EBA00936.1| transcription-repair coupling protein Mfd [Marinobacter sp. ELB17]
          Length = 1169

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/322 (16%), Positives = 111/322 (34%), Gaps = 26/322 (8%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     + +     Q   +V+  +   A +L    + F    A E   +        
Sbjct: 24  LHGSSDALAVCESARNHQGLTLVITRSTADAIRLEQAMRFFLGLPAEEDGPAISADGLEL 83

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSL-LERNDCIVVSSVSCIYGIGSVESYSQMI 294
             +P  +T    + S ++ I   R      L    +  +VV + + ++ +  V       
Sbjct: 84  LSLPDWETLPYDQFSPHQDIISRRIRTLHRLPSTAHGVLVVPARTLMHRLPPVNYLQGNT 143

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + LK+G S++       L    Y+  D     G + V G  ++IFP       +R+ +F 
Sbjct: 144 LLLKVGQSLDISSWRLQLEAAGYRYADNVYEHGEYAVRGAILDIFPMGAS-QPYRIDLFD 202

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           N+IE +  F P T + +  ++ +++     +   +   +            R    E+  
Sbjct: 203 NEIETLRTFDPDTQRSVDRIQQVELLPAFEFPWDKQARSAF----------RGRWFEQFP 252

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
              ++  + Q ++          +   IE Y          +   TLF+Y+P  + +F  
Sbjct: 253 SADKSAPVYQDVS-------QGITSPGIEYYLPLFF-----DATATLFDYLPASTRVFTA 300

Query: 475 ESHVTIPQISGMYRGDFHRKAT 496
           +       +        +R   
Sbjct: 301 DGLN--ESVQQFDSETRNRYED 320



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 13/179 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L    G + +  I  T      + +++   Q ++  V + I     +G
Sbjct: 768 MLNLTATPIPRTLNMAMGHLRDLSIIAT-PPARRLSVKTFVRQRDEPMVKEAILREILRG 826

Query: 583 LRILLT----VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++          ++ A DL + + E  + V   H +++  +  +I+ D    +F+VLV 
Sbjct: 827 GQVYFLHNNVTSIEKTAADLRQLIPEARVGVA--HGQMRERDLEQIMTDFYHKRFNVLVC 884

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K+I
Sbjct: 885 TTIIETGIDVPTANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKAI 939



 Score = 47.0 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 4/127 (3%)

Query: 100 TPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQ 159
           T   +AL ++  +   LL         + +S +N  +    F     +  + DQ  AI  
Sbjct: 569 TAKKKALEKIRDTAAELLDVYARREARKGFSFDNPQEAYRTFAAGFPFEETPDQEVAIQA 628

Query: 160 LLKGI-HSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           +L+ +   R   +L+ G  G GKT      A V     +   V+ P  +LA Q Y  F++
Sbjct: 629 VLEDMTSERPMDRLVCGDVGFGKTEVAMRAAFVATWSGKQVAVLVPTTLLAQQHYESFRD 688

Query: 216 FFPHNAV 222
            F   AV
Sbjct: 689 RFSDTAV 695


>gi|311064109|ref|YP_003970834.1| transcription-repair coupling factor [Bifidobacterium bifidum
           PRL2010]
 gi|310866428|gb|ADP35797.1| Mfd Transcription-repair coupling factor [Bifidobacterium bifidum
           PRL2010]
          Length = 1199

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 96/260 (36%), Gaps = 24/260 (9%)

Query: 152 DQPAAIAQLLKG---IHSREK--VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206
           D+  A  +L+ G   I   +     + +G     +    A   E    P +++  +   A
Sbjct: 37  DEDPAFHRLVSGGMSIADGKDIAPIITVGTPDGLRPAIAAAQAEHT--PVVLVVASSREA 94

Query: 207 AQLYSEFKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
               +  ++++  +  +      ++    E   PR DT   + +       R+ H +  +
Sbjct: 95  EDTVNALRSWYGGDPNDIAQLEAWETLPHERLSPRADTVASRMAVF----RRLTHPSDTN 150

Query: 266 LLERNDCIVVSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
            +     I+V  V  +      G+G V+           G+ +   ++   LV+  Y R 
Sbjct: 151 PMFGPIRILVMPVRSLIQPVVKGLGDVDPLV-----FTQGEELPLDDVSRRLVENAYTRV 205

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIKI 379
           D+ + RG F V G  I++FP        R+  FG++I+ I EF+    +     V TI  
Sbjct: 206 DLVMDRGEFAVRGGIIDVFPP-TAPHPVRIEFFGDEIDSIREFHASDQRTYGEGVRTIWA 264

Query: 380 YANSHYVTPRPTLNTAMKYI 399
                        + A + I
Sbjct: 265 TPCRELQLTDAVRDRAKRLI 284



 Score = 42.4 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 61/177 (34%), Gaps = 9/177 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 799 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAVRRELLRG 857

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +        ++E     R    H ++   +   +IRD      DVLV   
Sbjct: 858 GQVFYVHNRVQDIAKTAAKIHELVPEARVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTT 917

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    +K +
Sbjct: 918 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPSKPM 970


>gi|254491679|ref|ZP_05104858.1| transcription-repair coupling factor [Methylophaga thiooxidans
           DMS010]
 gi|224463157|gb|EEF79427.1| transcription-repair coupling factor [Methylophaga thiooxydans
           DMS010]
          Length = 1101

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 76/465 (16%), Positives = 155/465 (33%), Gaps = 68/465 (14%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A +L  E K +  +N            +P  + P  +T      S ++ I   R      
Sbjct: 4   AHRLELEAKFYLGNNP-----------RPILHFPDWETLPYDTFSPHQDIVSERLETLHQ 52

Query: 266 L-LERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           L L +   + V   + +  I          + L++GD  + ++    L K  Y+     +
Sbjct: 53  LPLFKQGILFVPIATLMQRIAPRAYLEGNTLMLEVGDQFDIEQWRMRLEKAGYRNVSQVM 112

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
             G F V G  I+++P     + +R+ +F ++I+ +  F P T + I N++TI++     
Sbjct: 113 EHGEFTVRGAIIDLYPM-GSKLPYRIDLFDDEIDTLRTFDPETQRSIENIDTIRLLPARE 171

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
           +      +    +  +   +             + QR     ++    +        IE 
Sbjct: 172 FPMSEDGIQLFRQQFRRHFE------------GDPQR-----SFIYREVSEGNVPGGIEY 214

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
           Y          E   TL +Y+P+++L+      +   +       D  R     +     
Sbjct: 215 YLPLFF-----EETSTLLDYLPDNTLIVNVADPLHGAEAFWQEISDRFR-QHRVDIE--- 265

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT--GLVDPPVEIR 562
                 RPL       L P  + V         +  Q + ++     T  G  +    I 
Sbjct: 266 ------RPL-------LEPQQVFVPVDDLFGRFKHYQRLQLQTFEHETKAGHQNYTSLIP 312

Query: 563 SART---QVEDVYDEINLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
              T   + +   + +    +Q   R+L    +    E L + L ++ I           
Sbjct: 313 PQLTMNARKDKPCEALQQFIEQFDGRVLFAAESAGRRETLLDLLRQQAI----------Q 362

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           L  ++   +       + V +  L +GL +P   +  I +    G
Sbjct: 363 LTTVKNWDEFVDSDTKLAVTVAPLEQGLILPMQNMAVIAEPQLFG 407



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 68/180 (37%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    II         ++    + + E + + +    ++G 
Sbjct: 707 VLTLTATPIPRTLNMSISGIRDLSIIATAPARRLAIKTFVMQWEAEKIREGMLREIKRGG 766

Query: 584 RILLTVLTKRMAEDLTEY----LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E +       + E  + V   H +++  E  +++ D    +F+VLV  
Sbjct: 767 QVYFLHNKVEDIERVAREIEAIMPEAKVAVA--HGQMRERELEQVMLDFYHQRFNVLVCT 824

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K +  
Sbjct: 825 TIIETGIDVPSANTIFIDRADKLGLAQ----LYQIRGRVGRSHHRAYAYLITPPQKVMTK 880



 Score = 42.0 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 59/161 (36%), Gaps = 15/161 (9%)

Query: 66  IHQRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTP 125
           I +    A +     +   S  +K  +  +E+    + + L   I +     K   + TP
Sbjct: 485 ISRYAGAAPELAPLHKLGTSQWDKARKRAAEKARDVAAELLD--IYARRAANKKTPMATP 542

Query: 126 HRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTFT 184
                     +D   F     + P+ DQ  AI  + K  +      +L+ G  G GKT  
Sbjct: 543 ---------GEDYAAFAAAFPFEPTPDQQDAIDAVTKDMLSEHPMDRLVCGDVGFGKTEV 593

Query: 185 ---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
               A +     +  +V+ P  +LA Q Y  FK+ F    V
Sbjct: 594 AMRAAFLAVHSGKQVLVLVPTTLLAQQHYENFKDRFADWPV 634


>gi|294629781|ref|ZP_06708341.1| transcription-repair coupling factor [Streptomyces sp. e14]
 gi|292833114|gb|EFF91463.1| transcription-repair coupling factor [Streptomyces sp. e14]
          Length = 1184

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 80/544 (14%), Positives = 161/544 (29%), Gaps = 66/544 (12%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
              ++ + +    + + F +A +     R  + +      A  L +  ++  P   V  +
Sbjct: 25  DGNRMHVDVVGPPAARPFAIAALARETGRTVLAVTATGREAEDLAAALRSLLPAEGVVEY 84

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS-----ATRSLLERNDCIVVSSVSC 280
            S+ +    E   PR+DT   + +     + R+ H       T  +      +       
Sbjct: 85  PSW-ETLPHERLSPRSDTVGRRLAV----LRRLAHPRADDPETGPVSVVVSPVRSVLQPQ 139

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           + G+G +E  +     L+ G S +  +++ +L    Y R ++   RG F V G  +++FP
Sbjct: 140 VKGLGDLEPVA-----LRTGQSADLNQVVEALAAAAYARVELVEKRGEFAVRGGILDVFP 194

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTPRPTLNTAMKYI 399
              E+   RV  +G+D+EEI  F     + +   E  +        +        A    
Sbjct: 195 P-TEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELLLTDEVRERA---- 249

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
              L     EL +                 L  +    + + +E+ +  L          
Sbjct: 250 -RALAEEHPELGE----------------LLGKIAEGIAVEGMESLAPVLVDDMEL---- 288

Query: 460 TLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL-RF 515
            L + +P+ ++  V +          +    +            G   P  +D   L   
Sbjct: 289 -LLDVLPKGAMAVVCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVDAASLWSI 347

Query: 516 EEWNCLRPT--TIVVSATP-GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
            +          +  S +P  + E       +   +  P             R       
Sbjct: 348 ADVRERARELDMMWWSVSPFAAEESAFDGDTLKLGMHAPDT----------YRGDTAKAL 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            +       G R +        A    E L    I  R       T  R   + +L    
Sbjct: 398 ADTKGWLADGWRTVYVTEGHGPAARTVEVLGAEGIAARL----AVTDGRTGDLGELSPSV 453

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             V      +  G   P   L  + + D  G   +     +   R  + ++   +   D 
Sbjct: 454 VHV--ACGCIDTGFVDPALKLAVLTETDLSGQRTASRDGARMPARRRKTIDPLTLEAGDY 511

Query: 693 ITKS 696
           I   
Sbjct: 512 IVHE 515



 Score = 38.9 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 66/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL- 583
            + +SATP    LE     I E     + +  PP E     T V    ++   AA +   
Sbjct: 784 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEEKQIGAAVRREL 839

Query: 584 ----RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
               ++          +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 840 LREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLV 899

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R        +     K  
Sbjct: 900 STTIVESGIDISNANTLIVERGDNFGLSQ----LHQLRGRVGRGRERGYAYFLYPPEKP- 954

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 955 ---LTETAHERLATIAQHTEMG 973


>gi|83720153|ref|YP_442612.1| transcription-repair coupling factor [Burkholderia thailandensis
           E264]
 gi|83653978|gb|ABC38041.1| transcription-repair coupling factor [Burkholderia thailandensis
           E264]
          Length = 1217

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 107/331 (32%), Gaps = 48/331 (14%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G  GS     +A+ + A +       V+  N + A +L  E + F P   V         
Sbjct: 85  GAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELRYFAPDARVRV------- 137

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESY 290
                 +P  +T      S ++ +   R +    L E     ++V + + +Y +      
Sbjct: 138 ------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFL 191

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +        G+ +++ +L + L    Y+     +  G + V G  I++FP     + +R+
Sbjct: 192 AAYTFAFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPM-GSPLPYRI 250

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F + ++ I  F P T + +  V  +++     +              +   + R  E 
Sbjct: 251 DLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA--------RTAFRSRWRET 302

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +                  + +        IE Y          +   TLF Y+PE++ 
Sbjct: 303 FEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----DETATLFHYLPENAQ 348

Query: 471 LFVDESHVT--------IPQISGMYRGDFHR 493
           L                  Q       D  R
Sbjct: 349 LVFTGDLDAAIKRFTADTKQRYAFLSHDRER 379



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 525  TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
             + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 814  VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 871

Query: 582  GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G ++          E+    L E     R +  H ++   E   ++RD    + +VL+  
Sbjct: 872  GGQVYFLHNEVETIENRRAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 931

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +++  
Sbjct: 932  TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQALTK 987

Query: 700  AIDETTRRRE--KQLE 713
               +  RR E  +Q+E
Sbjct: 988  ---QAQRRLEAIQQME 1000


>gi|325128294|gb|EGC51178.1| transcription-repair coupling factor [Neisseria meningitidis N1568]
          Length = 1305

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 141/416 (33%), Gaps = 59/416 (14%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  +   A +L + ++ F PH+                ++P  +T   +  S ++ + 
Sbjct: 37  VVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSPHQDLV 83

Query: 257 RMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
             R SA   +     D + V   + +  +  V   +     LK G +++   L + LV  
Sbjct: 84  SERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDA 143

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V 
Sbjct: 144 GYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVS 202

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
            I++     + T            +EE+                           + +  
Sbjct: 203 EIRLLPAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVYKAVSN 245

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
                 +E Y              TLF+YI ED L     S   +   +  +  D   + 
Sbjct: 246 GHFGAGVEYYLPLFFENEL----ETLFDYIGEDVLFV---SLGDVHAEANRFWSDVKSRY 298

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
           T+A+     P               L P  + +SA   +  L+    ++ +   +   L 
Sbjct: 299 TMAQGDETYPP--------------LLPQHLYLSADVFAGRLKNYGQVLPDVSGKEHTLP 344

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVR 610
           D  V       Q ++    +         RILL   +    E +  +L +  ++ +
Sbjct: 345 DLAV-----NRQSDEPLQALKDFQTTFEGRILLCAESLGRRETMLGFLQQNGLKAK 395



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 910  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 966

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 967  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 1024

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 1025 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1073

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1074 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1110

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1111 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1143


>gi|126662926|ref|ZP_01733924.1| transcription-repair coupling factor [Flavobacteria bacterium
           BAL38]
 gi|126624584|gb|EAZ95274.1| transcription-repair coupling factor [Flavobacteria bacterium
           BAL38]
          Length = 1087

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 101/254 (39%), Gaps = 26/254 (10%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD-YY 232
            G+ GS  +F    + +  + P +++  NK  AA   ++ +       V ++ S Y   Y
Sbjct: 2   TGLVGSSLSFVAHSLFKKSELPFLILFSNKEEAAYYLNDLEQLINAEDVLFYPSSYRRPY 61

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYS 291
           Q           IE+  + N  +     +   S   +   I+VS    I+  + + +   
Sbjct: 62  Q-----------IEETDNANVLLRAEVLNRINS--RKKPAIIVSYAEAIFEKVVTRKELE 108

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           +  ++L + D +    +  +L +  +KR D     G F V G  I++F S   D  +R+ 
Sbjct: 109 KNTLKLSVEDKLSIDFINETLFEYNFKRVDFVTEPGEFSVRGGIIDVF-SFSNDNPYRIE 167

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE--------- 402
            FGN+I+ I  F   T   I  ++ I I  N      +    + + YI E+         
Sbjct: 168 FFGNEIDSIRSFDVETQLSIEKLKKISIIPNVENKLLQENRESFLDYINEKTVLLIQNTE 227

Query: 403 -LKMRLIELEKEGR 415
            L  +L +L  +  
Sbjct: 228 LLGQQLDKLFDKAN 241



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 74/200 (37%), Gaps = 11/200 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +  +I        P+E    R   E + D I+   Q+G 
Sbjct: 680 TLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIETHVIRFNEEAIRDAISYEIQRGG 739

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   +       +V   H +++  +  E++     G+FDVLV   +
Sbjct: 740 QVFFINNRIENIKEVAGMIQRLVPGAKVGIGHGQMEGKKLEELMLAFMEGEFDVLVATTI 799

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI---- 697
           +  GLD+P    + I +A+  G     + L Q  GR  R+       +       +    
Sbjct: 800 IESGLDVPNANTIFINNANNFGL----SDLHQMRGRVGRSNKKAFCYFITPPYSMMTGEA 855

Query: 698 QLAIDETTRRREKQLEHNKK 717
           Q  I    +  E     N  
Sbjct: 856 QKRITALEQFSELGSGFNIA 875



 Score = 41.2 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A   G ++ + V T     +     +E L +  + V Y++      ++
Sbjct: 562 GKTEVAIRAAFKAVDNGKQVAVLVPTTILAYQHYRTFSERLKDMPVTVSYVNRFRTAKQK 621

Query: 622 IEIIRDLRLGKFDVLVGI-NLLREGLDIPECGLVAILDADKEG 663
            E ++ L+ GK D+L+G   L+ + +   + GL+ I +  K G
Sbjct: 622 SETLQKLQEGKVDILIGTHQLVNKNVVFKDLGLLIIDEEQKFG 664


>gi|320105780|ref|YP_004181370.1| transcription-repair coupling factor [Terriglobus saanensis SP1PR4]
 gi|319924301|gb|ADV81376.1| transcription-repair coupling factor [Terriglobus saanensis SP1PR4]
          Length = 1210

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 103/660 (15%), Positives = 215/660 (32%), Gaps = 97/660 (14%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             +L + +      + + G+T + +   +  +++A   PA+++  +   A  L+      
Sbjct: 19  FERLRRHLSGGSGRRRVSGLTFTARALYLPYMVKAGNAPALILVSDNKAAEALHQALLGT 78

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V          +    +P  D    +  S + +I   R S    +      +V++
Sbjct: 79  CELTGVLAC-------EEVLRLPAHDVLPFENLSPHAEIQEARASTLWKIATGQAKVVIA 131

Query: 277 SV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
            + S    + S + Y+ + ++LK G+  + + +L+ L+K  Y R D+  + G   + G  
Sbjct: 132 PLESACMRLFSKDFYAGLALELKRGEEYDTEMILAHLLKVGYTRVDVVEMPGQVTLRGGI 191

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++++   + D   R+  FG++IE + +F P T +    V+   +   +        L  A
Sbjct: 192 VDVYSPEM-DRPVRIDFFGDEIESMRKFDPDTQRSSTPVDEAILLPLTETPIT-EKLLNA 249

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
           +         RL+     G ++E     +        +         E ++         
Sbjct: 250 VHT-------RLVRGGAAGAMIEG---GEEPAELQSRVGQATIFPGWEFFAPVAG----- 294

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
               T+FE +   + +FV+E  +   Q    +     R                    R 
Sbjct: 295 -ATSTIFELMGPYTRVFVEEPAMVKNQGERWWNKIEQRHE------------------RS 335

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD---------PPVEI--RSA 564
                + P  I +S     W+LE    ++    +   G VD           +E   R  
Sbjct: 336 AIGTLVVPEDIYIS----PWDLEDRLRVLPGCDLDQLGAVDVLDVDNSALTEIEFATRPT 391

Query: 565 ---RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL-- 619
              R  +  + +++     Q  R+L+    +   E L   L E  +  R + S V+T   
Sbjct: 392 PRFRGSIPAMVEQLKSLTLQDARVLIAAPNQGEVERLATLLQEYQVPYR-IGSRVQTSSG 450

Query: 620 ------ERIEIIRDLRLGKFDVLVGINLLREGLDIPECG------LVAILDADKEGFLRS 667
                 E   +  DLR     V+V    +  G+ + +        LV     D       
Sbjct: 451 SATVYDESSYLAGDLRT---PVIVKTA-IANGVQVLDLDKATARMLVIFGAQDLNDDADV 506

Query: 668 KTSLIQTIGRAARN--------VNSKVILYADTITKSI-QLAIDETTRRREKQLEHNKKH 718
               +Q   + A          V   V+     I K +    ID+     E  +    + 
Sbjct: 507 TARPVQRKSKTAAFISDFRDLTVGDYVVHVEHGIAKYMGLRTIDQEGMPLELMILEFAEQ 566

Query: 719 NINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
                   +  + +    L++   T +     +   +           ++K M      L
Sbjct: 567 -------AKLYVPLTRLDLIQKYRTADTGPAPELNKMGGAAWAKTKARVKKAMQDMTAEL 619



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 61/187 (32%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE-INLAAQQGL 583
            + +SATP    L      + +  +  T   D            E +    I +  ++  
Sbjct: 802 VLAMSATPIPRTLHMSLLGLRDMSVIETPPKDRMAIQTIVAKFDEKLVRTAIEMELERSG 861

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I           DL   + E     R +  H ++   E  + +      +FDVL   ++
Sbjct: 862 QIYFVHNRVETIYDLASQIRELVPHARVITAHGQMGEGELEKAMLAFMNYEFDVLCATSI 921

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + I  AD+ G       L Q  GR  R                    +
Sbjct: 922 IENGLDIPRANTIIINRADRHGLSE----LYQLRGRVGRANRRAYAYLLIPPDNE----L 973

Query: 702 DETTRRR 708
            E  RRR
Sbjct: 974 TEVARRR 980


>gi|167619661|ref|ZP_02388292.1| transcription-repair coupling factor [Burkholderia thailandensis
           Bt4]
          Length = 1189

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 107/331 (32%), Gaps = 48/331 (14%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G  GS     +A+ + A +       V+  N + A +L  E + F P   V         
Sbjct: 57  GAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELRYFAPDARVRV------- 109

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESY 290
                 +P  +T      S ++ +   R +    L E     ++V + + +Y +      
Sbjct: 110 ------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFL 163

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +        G+ +++ +L + L    Y+     +  G + V G  I++FP     + +R+
Sbjct: 164 AAYTFAFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPM-GSPLPYRI 222

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F + ++ I  F P T + +  V  +++     +              +   + R  E 
Sbjct: 223 DLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA--------RTAFRSRWRET 274

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +                  + +        IE Y          +   TLF Y+PE++ 
Sbjct: 275 FEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----DETATLFHYLPENAQ 320

Query: 471 LFVDESHVT--------IPQISGMYRGDFHR 493
           L                  Q       D  R
Sbjct: 321 LVFTGDLDAAIKRFTADTKQRYAFLSHDRER 351



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 786 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 843

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L E     R +  H ++   E   ++RD    + +VL+  
Sbjct: 844 GGQVYFLHNEVETIENRRAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 903

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +++  
Sbjct: 904 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQALTK 959

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 960 ---QAQRRLEAIQQME 972


>gi|114570035|ref|YP_756715.1| transcription-repair coupling factor [Maricaulis maris MCS10]
 gi|114340497|gb|ABI65777.1| transcription-repair coupling factor [Maricaulis maris MCS10]
          Length = 1172

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 80/465 (17%), Positives = 154/465 (33%), Gaps = 84/465 (18%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
            + G          A          + +A +   AA   +  + F P   +         
Sbjct: 23  TVCGAPEGLDALVFADTARLRGGVNVFIARDDSRAAAFVAALQFFAPDIELLR------- 75

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI---VVSSVSCIYGIGSVE 288
                 +P  D       S + ++   R +    L          VV++V+ +       
Sbjct: 76  ------LPAWDCQPYDRISPSPRVAARRAATLAKLASGELGPATLVVTTVNAMAQRCPPR 129

Query: 289 SY-SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           S      + ++ G SV+   L+       Y R    +  G F V G  ++++P    +  
Sbjct: 130 SVLQDSGLSIRPGASVDVDVLVRHFTANGYSRAATVMEPGDFAVRGGVVDVYPPGATE-P 188

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG+ +E I  F P T + +R +++I+    S  +    +++            R 
Sbjct: 189 VRLDFFGDTLESIRAFDPETQRSLRQIKSIEFTPVSEVLLDEDSVSRF----------RS 238

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
             ++  G         +      E +        +E++          E   T F+Y+P+
Sbjct: 239 GFVKTFGA-------SRGTDPVYESVSAGARPAGVEHWMPLFY-----ERLDTPFDYLPD 286

Query: 468 DSLLFVDESHV-----TIPQISGMYR-----GDFHRKATLAEYGFR-LPS---------- 506
            SL+ VD          + QI+  Y      G+   ++ L+   +R LP+          
Sbjct: 287 QSLIAVDHLAHEALDERLSQIADYYDSRIAAGETRHESALSAPTYRALPADALYFADGEW 346

Query: 507 --CMDNRPL-RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
              + +RP+ R+  +    P TI V+        +Q +G   E+    T + D       
Sbjct: 347 DTALADRPVRRYTAFREPGPQTIDVA-------GKQGRGFAAERAAENTNVFDA------ 393

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
                  V   I   +  G  ++L   T   +E L   L +  I 
Sbjct: 394 -------VAAHIKSLSASGKTVMLASWTGGASERLASVLGDHGIS 431



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 13/194 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--YDEINLAAQQ 581
             + ++ATP    L+     I +  I  T  VD    +R+     + V   + +     +
Sbjct: 770 HVLTLTATPIPRTLQLALTGIRDLSIIATPPVDRLA-VRTYVAPFDPVSVREALLREKYR 828

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V      E+ T +L E    V ++  H ++   +  +I+     G++DVL+  
Sbjct: 829 GGQAFFVVPRITDLEETTRFLRESVPEVSFVAAHGQMAASQLEDIMTAFYEGRYDVLLST 888

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  AD+ G  +    L Q  GR  R+           +T  ++ 
Sbjct: 889 TIVESGIDIPTANTLIIHRADRFGLSQ----LYQLRGRVGRSKTRAYAY----LTTPMRQ 940

Query: 700 AIDETTRRREKQLE 713
            I E+  +R K ++
Sbjct: 941 KITESAEKRLKVMQ 954



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 53/146 (36%), Gaps = 4/146 (2%)

Query: 103 VQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLK 162
            +A  RL    + L+K        ++  I   S     F     Y  + DQ  AI  +L 
Sbjct: 575 AKAKKRLRDMADQLIKIAAERLARKAEPIETSSGAFDEFCSTFPYPETDDQLNAIDDVLT 634

Query: 163 GIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            +       +L+ G  G GKT      A V+    +   ++AP  +LA Q +  F + F 
Sbjct: 635 DLGRGRPMDRLICGDVGFGKTEVALRAAFVVALSGQQVAIVAPTTLLARQHFKTFSDRFR 694

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTY 244
              V+  +        EA   R +  
Sbjct: 695 GWPVKVRLLSRLVTAKEAKATRDELA 720


>gi|323359428|ref|YP_004225824.1| transcription-repair coupling factor [Microbacterium testaceum
           StLB037]
 gi|323275799|dbj|BAJ75944.1| transcription-repair coupling factor [Microbacterium testaceum
           StLB037]
          Length = 1195

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 84/530 (15%), Positives = 171/530 (32%), Gaps = 78/530 (14%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM-----QRPAIVMAPNKILAA 207
           Q  +  +          + L+ G+        +A ++E           +V+AP    A 
Sbjct: 12  QAESYREAASAASVDLSLSLVDGLD----APVIAGLVERRRAAGDPGAVLVIAPTGRRAE 67

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
            L        P   V +F ++ +    E   P  +T   +       +D +R  A  +  
Sbjct: 68  SLGPALDAVLPGAQVLHFPAW-ETLPHERLSPSPETVGRR-------LDVLRRIA--AWN 117

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS-VEQKELLSSLVKQQYKRQDIGIIR 326
                +V +SV       +        V+L +G    E + + + LV+  Y R D+   R
Sbjct: 118 GEAPLVVTASVRSALQPLAPGLGDVAPVELTVGGRGHELEAVTTRLVELAYHRVDMVSRR 177

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKIYANSHY 385
           G F V G  +++FP  + D  +RV  FG+++++I  F     + +   V T+ +  +   
Sbjct: 178 GEFAVRGGILDVFPP-VADHPYRVEFFGDEVDQIRAFSVADQRSLPGEVTTVTLVPSREL 236

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
           +                            R    +     +   LE +      + +E+ 
Sbjct: 237 LLTP---------------------AVRARAAALRDAYPGLRQLLEKMAEGIPAEGMESL 275

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ---ISGMYRGDFHRKATLAEYGF 502
              L      +   TL +Y+P  S + + +   ++ +   +    R       + A  G 
Sbjct: 276 IPVLI-----DDLTTLVDYLPGGSAVALVDPERSLARATTLGDTNREFLEAAWSAATAGA 330

Query: 503 RLPSCMDN-RPLRFEEWNCLR--------PTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
             P  +D+   +  ++ +             +   S    + +     G      I+   
Sbjct: 331 DTPVDLDSGDFVTLDDLHERASGRGGVWWQFSAFDSGAADAEDEGLTVGDDSAHRIKADA 390

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
                  + S +  VE     +      G  +++T     M +   + L ER I  R + 
Sbjct: 391 -------VPSFQGNVEGATAHVGELLADGWAVIVTASGPGMVDRARDVLAERGIAARRVD 443

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             +   E          G   V+     L  G ++ E     I + +  G
Sbjct: 444 DVLTPPE---------PGVAHVVCAP--LERGFELTEARFAVITETEFYG 482



 Score = 44.3 bits (103), Expect = 0.080,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     T   D         + V     + +   I    
Sbjct: 793 ILAMSATPIPRTLEMAVTGIREMSTLATPPEDR----HPILSYVGPRNDKQIAAAIRREL 848

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          + +  +L E     R    H ++      +++ D    + DVLV
Sbjct: 849 LREGQVFYVHNRVSSIQRVAAHLAELVPEARIVVAHGQMGEHALEQVVDDFWERRADVLV 908

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + I  ADK G  +    L Q      R    +   YA  +   +
Sbjct: 909 STTIIETGLDISNANTIIIDRADKYGLSQ----LHQL---RGRVGRGRDRAYAYFLYDEM 961

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
           +  + ET   R + +  N    
Sbjct: 962 KP-LSETAADRLETIAVNNDLG 982


>gi|116750898|ref|YP_847585.1| transcription-repair coupling factor [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699962|gb|ABK19150.1| transcription-repair coupling factor [Syntrophobacter fumaroxidans
           MPOB]
          Length = 1189

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/523 (13%), Positives = 179/523 (34%), Gaps = 52/523 (9%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            ++L  +    +  +L G       + +A+ +  ++RP +++ P    A         F 
Sbjct: 24  REILAFLGESRESAVLRGAQKPAVAYLLARGMATLKRPFLLVTPTDREAESFAETIAFFA 83

Query: 218 PHN--AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
            ++    +       +  P     ++ +   K +++  +++ + H+   S+   ++  V 
Sbjct: 84  GNDLHRQDVPADRRVWCLPSRSGQKSQSLG-KMATMARRMETL-HAFRASI--GSNVFVT 139

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           S+V+ +  +   E           G++VE + L ++LV++ Y R  +    G F + G  
Sbjct: 140 SAVALMERLLLPEVLLAHSDYRVKGETVELETLCATLVERGYYRVSLVEEYGDFSIRGGV 199

Query: 336 IEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
           ++++ P +      R+  FG+++E I  F+P T + +  +E   +   S  +        
Sbjct: 200 LDVYAPLYR--WPLRLEFFGDELESIRLFHPSTQRSMGILEDAVLLPASEVILDVSARER 257

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A + +  +++     L      +   +L           +      + E+          
Sbjct: 258 AREAVYADVRE--GRLTPAAGNVWLDKL-----------QEGHQFGAFESIMSVFY---- 300

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD-FHRKATLAEYGFRL-PSCMDNRP 512
            E   T++ Y+   +++   ++      +   +           + + +R  PS +   P
Sbjct: 301 -EKTVTVWNYLDPATVVVWSDALQIRKIMEEFFLHASRDWNENHSPHEWRRPPSELLEIP 359

Query: 513 LRF----EEWNCLRPTTIVVSATP-GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
            R     E +  L   ++     P   +++       +   +R     +  +E      Q
Sbjct: 360 ERLIADGESFQQLIVNSLSGGTEPRAVFDMGTSGHEQLALSVRAHAEKERLLE--PLARQ 417

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            +          ++G+   L    K  A  L+E L               T+  +     
Sbjct: 418 FQ-------RWREEGILSFLVCRQKEQAGRLSELLEGHG---------TDTVLTLLPFGA 461

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
                  V V +  L  G   P   L  + + +  G    + S
Sbjct: 462 ESYEAPAVKVIVGSLDRGFVWPAERLAVVAEEEIFGKRTRRRS 504



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H ++K  +  +++ D    K DVLV   ++  GLDIP    + I  ADK G  +      
Sbjct: 884 HGQMKERDLEKVMLDFIRRKIDVLVCTTIIESGLDIPAANTIIINRADKFGLAQIY---- 939

Query: 673 QTIGRAARNVN 683
           Q  GR  R+  
Sbjct: 940 QLRGRVGRSSE 950


>gi|311113149|ref|YP_003984371.1| transcription-repair coupling factor [Rothia dentocariosa ATCC
           17931]
 gi|310944643|gb|ADP40937.1| transcription-repair coupling factor [Rothia dentocariosa ATCC
           17931]
          Length = 1229

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 82/522 (15%), Positives = 171/522 (32%), Gaps = 76/522 (14%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRP--------AIVMAPNKILAAQLYSEFKNFFPHNAV 222
           Q L+G     +   +A +  A++R          +++ P +  A        ++ P + +
Sbjct: 33  QTLIGAVAGVQAPLIADLAVAVRRQSRTGKTPLTLIITPTERQAEDTAHALHSYLPDHHI 92

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
           E F ++ +    E   PR+DT  ++ + +   I  +     + ++     ++   V+ I 
Sbjct: 93  ESFPAW-ETLPHERLSPRSDTVGKRLNVLRS-ITHLETPTPQVVIAPVRAVIQPLVAGIE 150

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +  V         L  G+    K+++  L    Y R D+   RG + V G  I++F + 
Sbjct: 151 NLEPV--------SLARGEEYSFKDVIKGLTDAAYSRVDLVAKRGEYAVRGGIIDVF-AP 201

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKIY---ANSHYVTPRPTLNTAMKY 398
                 R+  FG++++EI  F     + + +  +             +     +  A   
Sbjct: 202 TAQHPVRLEFFGDELDEIRYFSTADQRTLGQEADHPTHVTLLPCRELLITPEVMGRA--- 258

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
                  RL           +  L        E +      + +E+ +  L  +      
Sbjct: 259 ------ARLK----TDYPAASSML--------EKIAGGIYVEGMESLTPLLVDKMQ---- 296

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH----RKATLAEYGFRLPSCMDNRPLR 514
            TL   +PE+SL+   E      +   +   +           A+ G R P  +    + 
Sbjct: 297 -TLVSLLPEESLIISLEPERVRARAEDLVATNEEFLAAAWDASADAGSRAPIDLGQLRVS 355

Query: 515 FEEWNCL-RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ------ 567
              ++ +       +      WE+ +    +V+ +      +D  +   +   Q      
Sbjct: 356 DSGFHTIAATQQESLDRNLSWWEITE----LVDSVDLLNNALDDDIPTMTVAAQAPASFT 411

Query: 568 --VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL-ERIEI 624
             VE +  E+    + G  +L     +   + L E   E       +  E      R E 
Sbjct: 412 GSVEQMLHEVGSLVRDGWTVLALTNGRGSTDRLIELFRES------ISGEDPIPAIRRET 465

Query: 625 IRDLRLGKFD---VLVGINLLREGLDIPECGLVAILDADKEG 663
           +     G      V V       G  IPE  L  + + +  G
Sbjct: 466 LDGGTEGALQPGVVEVCETPASAGFLIPEARLAVLTEGEILG 507


>gi|307942228|ref|ZP_07657579.1| transcription-repair coupling factor [Roseibium sp. TrichSKD4]
 gi|307774514|gb|EFO33724.1| transcription-repair coupling factor [Roseibium sp. TrichSKD4]
          Length = 1162

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 76/535 (14%), Positives = 179/535 (33%), Gaps = 74/535 (13%)

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA--AQLYSEFKNFFPH 219
           + + + +    L  V    +++ ++K++       + +      A   Q+ +E  +FF  
Sbjct: 3   ERLLNDQANVTLSSVPDGAESYALSKLLSESDSTGLALVFIARDATRMQMITEALSFFSP 62

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-----ERNDCIV 274
           + VE              +P  D       S N  I   R  A  +L       R   ++
Sbjct: 63  D-VEVLQ-----------LPAWDCLPYDRVSPNPAISARRLLALGTLAHGVKSGRKTVLM 110

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
            +  + +  +   +  +   + +  G+ ++   + + L    + R       G + V G 
Sbjct: 111 TTVNAALQRVPDRQWMTNQTLTMAPGNQIDMSAISNWLESNGFSRTPTVRETGEYAVRGG 170

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            +++F +  +    R+  FG+ +E I  F P T + ++ ++ + +   S  V     ++ 
Sbjct: 171 IVDLF-APGDSEPVRLDFFGDTLESIRSFDPATQRTVKQLKRLDLVPMSEVVLSEGAVSR 229

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
                      R   L   G       L Q I+              +E++      +  
Sbjct: 230 F----------RRSYLASFGAASREDVLYQSIS-------DGRRYAGMEHWLPLFHDKLE 272

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
                TLF+YI E + + +D S   + +       + +     A +   +   +   P+ 
Sbjct: 273 -----TLFDYI-EGTPIVLDTSVSDVVRERSDQIKEHYSAREEARHQGSVAGSVPYMPVE 326

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ------- 567
                   P  + + A   + +L       ++    P G     +++   + +       
Sbjct: 327 --------PDLLYLPADDWTTQLADMGTASLDAFTPPPGSGKTVIDLEGRQGRSFAAERT 378

Query: 568 ------VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
                  + +   +    + G R ++   ++   + L + L +  +       EV+TLE 
Sbjct: 379 AGDVNIFDALTKHVKSLQESGKRTVIACWSEGSRDRLGQILSDHGLDNAA---EVETLEG 435

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           +  +      K   L  +  +  G ++ E   V   + D  G    + S  +  G
Sbjct: 436 VLEL----PKKTTALCVLG-IEHGFELSEIAFV--GEQDILGDRLVRKSRRKAKG 483



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 13/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 765 HVLTLSATPIPRTLQLALTGVRELSLIATPPVDRLA-VRTFVSPFDPLVVREALLREHYR 823

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +            D  ++L E+   ++V   H ++   E  +++     GK++VL+  
Sbjct: 824 GGQSFYVCPRLADLADRKQFLEEQVPELKVAVAHGQMPPSELEDVMNAFYEGKYNVLLST 883

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K + +
Sbjct: 884 TIVESGLDIPTANTLIVHRADMFGLSQ----LYQLRGRVGRSKTRAYALFTVPANKKLTV 939

Query: 700 AIDETTRRREK 710
               T  RR K
Sbjct: 940 ----TAERRLK 946


>gi|319898902|ref|YP_004158995.1| transcription repair coupling factor [Bartonella clarridgeiae 73]
 gi|319402866|emb|CBI76417.1| transcription repair coupling factor [Bartonella clarridgeiae 73]
          Length = 1166

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 82/508 (16%), Positives = 163/508 (32%), Gaps = 74/508 (14%)

Query: 175 GVTGSGKTFTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           GV    + F +AK+   +   +P + +  +    A L        P+  V  F       
Sbjct: 21  GVVDGFEAFALAKLSAEIAKDKPLVYIVRDGTKMAYLQQALNFIKPNLPVLQF------- 73

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-----RNDCIVVSSVSCIYGIGSV 287
                 P  D       S    I   R SA   + +     R+  I+ ++ + I  +   
Sbjct: 74  ------PAWDCLPYDRVSPGIIITARRLSALAHMSDLRKNPRSAIILTTANTIIQKLPPC 127

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDV 346
               + I+  ++G  ++   L+  L +  ++R       G F V G  I+IF PS+ E  
Sbjct: 128 VMIDEQIIHARVGQCMDMTHLIHYLERNGFERVATVRDIGEFAVRGGIIDIFSPSYTE-- 185

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG+ +E I  F   T + I N   + +   S  +     ++             
Sbjct: 186 PLRLDFFGHTLEAIRVFDSATQRTIANKTELFLQPMSEIILTPKFISRFKSN-------- 237

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY-- 464
              +   G   ++  L        E +        +E++  +       E   + F++  
Sbjct: 238 --YIRVFGVPKKSDML-------YEAVSQGRRFPGMEHWLPFFY-----ENLNSFFDHCG 283

Query: 465 -IPEDSLLFVD----ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM----DNRPLRF 515
            +P      ++    E H  I       R     +     Y    P+ +    +      
Sbjct: 284 NLPVVFEHLIEEVLIERHRLIEDYYSARRECESNQENAVSYNPIDPNLLYWTPEQVLTCI 343

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           E+       T    +      +           I+    +D  V           V D I
Sbjct: 344 EQSGQRIDFTPFNISQTVEQTVIHTNVTQGYDFIKERNALDKNV--------FSSVVDHI 395

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G ++LL   ++   + L + L E  ++   +   ++T++     R        +
Sbjct: 396 ASLRSAGKKVLLAFWSEGSMDRLLQVLDEHGLQKVEIAKSLQTVKATPRDR--------I 447

Query: 636 LVGINLLREGLDIPECGLVAILDADKEG 663
           L  + ++  G +I +   V I + D  G
Sbjct: 448 LAAVLMIEHGFEIGD--FVIIAEQDILG 473



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 96/275 (34%), Gaps = 46/275 (16%)

Query: 524  TTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
              + +SATP    L      + E       P   +     I      V  + + +     
Sbjct: 768  HVLTLSATPIPRTLSLALSGLRELSLITTPPIDRMAVRTFISPFDVMV--IRETLLREYY 825

Query: 581  QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
            +G +             + EYL      ++++  H ++   +  +I+     G++DVL+ 
Sbjct: 826  RGGQSFYVCPRISDLSYVEEYLKTHVPELKFVIAHGQMPARQLDDIMNAFYDGQYDVLLS 885

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  GLDIP    + +  A+  G     ++L Q  GR  R+      L+     K + 
Sbjct: 886  TTIIESGLDIPTANTLIVHRAEMFGL----SALYQLRGRVGRSKQRAYALFTFPSGKVLI 941

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
             A D    RR K                  +++ +D +       ++        +L  +
Sbjct: 942  PAAD----RRLK------------------VLQSLDTLGAGFQLASHDMDIRGSGNLLGE 979

Query: 759  KGKAHLK----SLRKQMHLAADNLNFEEA-ARIRD 788
            +   H+K     L ++M         EEA A ++D
Sbjct: 980  EQSGHIKEVGFELYQKML--------EEAVAELKD 1006


>gi|207110335|ref|ZP_03244497.1| excinuclease ABC subunit B [Helicobacter pylori HPKX_438_CA4C1]
          Length = 112

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/112 (39%), Positives = 74/112 (66%)

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           +SSIN+ ++R+R SAT SLL  +D IV++SVS  YG+G+ E Y +++ ++K+G+    K 
Sbjct: 1   DSSINDDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKS 60

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359
            L  LV+  Y R ++   RG+FR  G+ ++IFP++ +    R+  FG++IE 
Sbjct: 61  FLLKLVEMGYSRNEVVFDRGSFRAMGECVDIFPAYNDAEFIRIEFFGDEIER 112


>gi|94310893|ref|YP_584103.1| transcription-repair coupling factor [Cupriavidus metallidurans
           CH34]
 gi|93354745|gb|ABF08834.1| transcription-repair coupling factor [Cupriavidus metallidurans
           CH34]
          Length = 1150

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 86/509 (16%), Positives = 169/509 (33%), Gaps = 81/509 (15%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP---AIVMAPNKILAAQLYSEFKNFFPHN 220
           I    +   + G+TGS     +A      +R      V+  + + A +L  E   F P  
Sbjct: 16  IKPGLR-HAVNGLTGSADALAVAAYARQHRRSAPMVAVVCAHAVDAQRLAEEIPWFAPEL 74

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVS 279
            V               +P  +T      S ++ +   R +    +       ++V + +
Sbjct: 75  RVRL-------------LPDWETLPYDSFSPHQDLVSERLATLHDIQGGQCDVMLVPAST 121

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
            +Y +      +      K G  +++  L +      Y+     +  G + V G  I+++
Sbjct: 122 ALYRLAPPAFLAAYTFFFKQGAKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLY 181

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P     + +R+ +FG++IE I  F P + + +  V+ +++     +     T  TA +  
Sbjct: 182 PMGSA-LPYRIDLFGDEIETIRAFDPDSQRSLYPVKEVRLLPGREFPLD-ETARTAFRGR 239

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
             EL          G   +        +   + +        IE Y          E   
Sbjct: 240 WRELFE--------GDPTK--------SPIYKDIGNGVPSAGIEYYLPLFF-----EQSA 278

Query: 460 TLFEYIPEDSLLF----VDESHVTI----PQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
           TLF+Y+PE + L     VDE+         Q     R D  R          LP    + 
Sbjct: 279 TLFDYLPEGTQLAFSGNVDEAIRRFWADTTQRYNFMRHDRERP--------LLPPA--DL 328

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            L  E++         V A P +  + Q      +       L D  V  R+     + +
Sbjct: 329 FLSEEQF--------FVGAKPLARLVLQRDAAPADAPAFAGHLPDVSVNRRAE----DPL 376

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +  +L   +  R+L+   +    E L +   E  +R             ++       G
Sbjct: 377 VNLESLLLNKATRVLMCADSAGRRETLLQLFAESGLR----------PMIVDDFAAFLAG 426

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDAD 660
                + +  L+ G  +P   +  + +A+
Sbjct: 427 DSHFSIAVAPLQTGFALPSAQMAFVTEAE 455



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 80/198 (40%), Gaps = 20/198 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + I    ++
Sbjct: 759 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGV--IREAILRELKR 816

Query: 582 GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E+    L E + E  I V   H ++   E   ++RD    + ++L+
Sbjct: 817 GGQVYFLHNEVETIENKRAKLAELVPEARIAVA--HGQMHERELERVMRDFVSRRDNILL 874

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +   +
Sbjct: 875 CTTIIETGIDVPTANTILIHRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLVHDV 927

Query: 698 QLAIDETTRRRE--KQLE 713
           +    +  RR E  +Q+E
Sbjct: 928 EGLTRQAQRRLEAIQQME 945


>gi|255327280|ref|ZP_05368354.1| transcription-repair coupling factor [Rothia mucilaginosa ATCC
           25296]
 gi|255295560|gb|EET74903.1| transcription-repair coupling factor [Rothia mucilaginosa ATCC
           25296]
          Length = 1249

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 89/560 (15%), Positives = 180/560 (32%), Gaps = 82/560 (14%)

Query: 143 MQTDYHP---SGDQP---AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           ++   HP   + +Q    AAI        +    + L+G         +A +  A++   
Sbjct: 12  LEAPLHPLLNTLNQLSSWAAIRTAASAKPAERSARTLIGAVAGTHAALIADISAAVRGTT 71

Query: 197 -----IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
                +++AP    A  L +  +++ P   +  F ++ +    E   PR+DT   +    
Sbjct: 72  PEVLSLIIAPTDRQAEDLAAALRSYLPAADIALFPAW-ETLPHERLSPRSDTVGRR---- 126

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
              +  +R + T     R   ++    + I  I +     +  V L  G+    K+++  
Sbjct: 127 ---LQVLR-AMTGEPSSRPQVVIAPVRAVIQPIVTGIEKLE-PVHLVRGEEYPFKDVVRG 181

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           L    Y R D+   RG + V G  I++FP        R+  FG++++E+  F     + +
Sbjct: 182 LNDAAYSRVDLVAKRGEYAVRGGIIDVFPP-TATTPVRLEFFGDELDEMRHFSVADQRTL 240

Query: 372 ---RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
                +  + +      +     ++ A          RL         +           
Sbjct: 241 SGGEELTELTLLPCRELLITPEVMSRA---------ARLKADYPAAATM----------- 280

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISG 485
             E +      + +E+ +  L      E   TL E +P  S++   E          +  
Sbjct: 281 -FEKIAGGIYVEGMESLTPLLI-----ESMNTLTELLPAGSMIINVEPERVRARAEDLVA 334

Query: 486 MYRGDFHR-----------------KATLAEYGFRLPSCMDNRPLR-----FEEWNCLRP 523
                                    +  +++ GFR       + L      +E    +  
Sbjct: 335 TNEEFLAAAWDTSAEADAVAPIDLGQLRMSDSGFRTIDQTTTQALEDKLSWWEITELVTD 394

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++  A  G+ E +     I + I   T    P          VE +  ++    QQ  
Sbjct: 395 ADLLEDAAAGALENQSIADAIEDGIDTYTVNATPATA---FNGSVERMLSQVGDLIQQQW 451

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
            +L     +   + L + L+        + +  +T    +   DL  G  +V        
Sbjct: 452 TVLALTNGRGSTDRLID-LFHSGEGAPAVPAARRTSLEADPAGDLEHGIVEV--CEAPAS 508

Query: 644 EGLDIPECGLVAILDADKEG 663
            G  I E  L    +A+  G
Sbjct: 509 AGFLIEEAKLAVFTEAELLG 528



 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 19/230 (8%)

Query: 75  KGEFQSQSSISMSE-KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINN 133
            GE  S S +  S+  +T+  + + +      L +L  +       G  +     W    
Sbjct: 628 GGENPSLSKMGGSDWAKTKSRARKAVKEIAADLVKLYSARQ--ASRGHAFAADTPWQREL 685

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSR-EKVQLLLGVTGSGKTFT---MAKVI 189
                        Y+ + DQ  AI ++ + +       +L+ G  G GKT      A   
Sbjct: 686 EESF--------PYNETPDQLTAIHEVKEDMEKEIPMDRLISGDVGFGKTEVAVRAAFKA 737

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
               +   V+ P  +LA Q Y  F   F    V+  V        E      +       
Sbjct: 738 VQDGKQVAVLVPTTLLAQQHYETFSERFSGFPVKIRVLSRFQKAKETRQITEEIASGAVD 797

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
            +   I   R   + S++ ++  +V+      +G+   E   QM   + +
Sbjct: 798 VV---IGTHRIL-SDSVVFKDLGLVIIDEEQRFGVEHKEKLKQMRTNVDV 843


>gi|152965035|ref|YP_001360819.1| transcription-repair coupling factor [Kineococcus radiotolerans
           SRS30216]
 gi|151359552|gb|ABS02555.1| transcription-repair coupling factor [Kineococcus radiotolerans
           SRS30216]
          Length = 1193

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/467 (15%), Positives = 150/467 (32%), Gaps = 49/467 (10%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+   ++         L +      +   +A       RP +V+         + +  +
Sbjct: 14  PAVRAAVETAREGTSTALDVVAPVGVRPALVAAFAAE--RPLLVVTATGRECEDMATWLR 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
            + P + V  F ++ +    E   PR+DT  ++ +     + R+ H +          +V
Sbjct: 72  CYLPADQVAEFPAW-ETLPHERLSPRSDTVAQRLAV----LRRLAHPSPDDPTTGEVRVV 126

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           V+ +  +             V+L+ GD    +  + +L    Y R D+   RG F V G 
Sbjct: 127 VAPIRAVLQPLVKGLADLEPVRLRAGDDAGLETAVEALAAAAYSRVDMVERRGEFAVRGG 186

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLN 393
            +++FP        RV  FG+++EE+  F     + +    + +        +       
Sbjct: 187 ILDVFPPTR-PHPLRVEFFGDEVEEVRSFSVADQRTLEVEPDGVWAPPCRELLLTDVVRE 245

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR-YLTGR 452
            A       L   L                      L  +    + + +E+ +   + G 
Sbjct: 246 RA-----RALMETLPGAADV----------------LAKIAEGIAVEGMESLAPALVDGM 284

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
            P      L + +P  + + + +      ++           A   +  +   +     P
Sbjct: 285 EP------LLDVLPAGTHVVLADP----EKVRARAHDLVATGAEFLDAAWMNAAAGGATP 334

Query: 513 --LRFEEWNCLRPTTIVVSATPGSW----ELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
             L    +  L        AT   W     L     +   + +R   +    VE  + R 
Sbjct: 335 VDLGSSSFATLAEVRAHAEATGRPWWSITSLTADADLRDLEDVRILRIGARDVE--AYRG 392

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           + E    E+   A  G RI++T      A+ L E L   ++  R + 
Sbjct: 393 ETEKALRELRDLASAGWRIVVTTEGHGPAKRLVEMLSGEDVPARLVD 439



 Score = 42.0 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 51/149 (34%), Gaps = 11/149 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     T    PP E     T V     + +   I    
Sbjct: 782 VLAMSATPIPRTLEMAVTGIREMSTLAT----PPEERHPVLTYVGGQEEKQITAAIRREL 837

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     L E     R    H ++      +++ D    +FDVLV
Sbjct: 838 LREGQVFYVHNRVSSIERTAARLKELVPEARIATAHGQMGEHRLEQVVVDFWEKRFDVLV 897

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLR 666
              ++  GLDI     + +  AD  G  +
Sbjct: 898 CTTIVETGLDISNANTLIVERADAMGLSQ 926


>gi|167581546|ref|ZP_02374420.1| transcription-repair coupling factor [Burkholderia thailandensis
           TXDOH]
          Length = 1175

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 107/331 (32%), Gaps = 48/331 (14%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G  GS     +A+ + A +       V+  N + A +L  E + F P   V         
Sbjct: 43  GAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELRYFAPDARVRV------- 95

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESY 290
                 +P  +T      S ++ +   R +    L E     ++V + + +Y +      
Sbjct: 96  ------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFL 149

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +        G+ +++ +L + L    Y+     +  G + V G  I++FP     + +R+
Sbjct: 150 AAYTFAFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPM-GSPLPYRI 208

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F + ++ I  F P T + +  V  +++     +              +   + R  E 
Sbjct: 209 DLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA--------RTAFRSRWRET 260

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +                  + +        IE Y          +   TLF Y+PE++ 
Sbjct: 261 FEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----DETATLFHYLPENAQ 306

Query: 471 LFVDESHVT--------IPQISGMYRGDFHR 493
           L                  Q       D  R
Sbjct: 307 LVFTGDLDAAIKRFTADTKQRYAFLSHDRER 337



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 772 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 829

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L E     R +  H ++   E   ++RD    + +VL+  
Sbjct: 830 GGQVYFLHNEVETIENRRAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 889

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +++  
Sbjct: 890 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQALTK 945

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 946 ---QAQRRLEAIQQME 958


>gi|167894790|ref|ZP_02482192.1| transcription-repair coupling factor [Burkholderia pseudomallei
           7894]
          Length = 545

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 105/331 (31%), Gaps = 48/331 (14%)

Query: 175 GVTGSGKTFTMAK--VIEAMQRPAI-VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G  GS     +A+       Q P + V+  N + A +L  E   F P   V         
Sbjct: 57  GAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELAYFAPDARVRV------- 109

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESY 290
                 +P  +T      S ++ +   R +    L E     ++V + + +Y +      
Sbjct: 110 ------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFL 163

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +        G+ +++ +L + L    Y+     +  G + V G  I++FP     + +R+
Sbjct: 164 AAYTFSFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPM-GSPLPYRI 222

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F + ++ I  F P T + +  V  +++     +              +   + R  E 
Sbjct: 223 DLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA--------RTAFRSRWRET 274

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +                  + +        IE Y          +   TLF Y+PE + 
Sbjct: 275 FEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----DETATLFHYLPERAQ 320

Query: 471 LFVDESHVT--------IPQISGMYRGDFHR 493
           L                  Q       D  R
Sbjct: 321 LVFTGDLDAAIKRFTADTKQRHAFLSHDRER 351


>gi|254465368|ref|ZP_05078779.1| transcription-repair coupling factor [Rhodobacterales bacterium
           Y4I]
 gi|206686276|gb|EDZ46758.1| transcription-repair coupling factor [Rhodobacterales bacterium
           Y4I]
          Length = 1151

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/338 (15%), Positives = 118/338 (34%), Gaps = 40/338 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           ++   + G         + K +++   P + +A +      + +    F P   V  F  
Sbjct: 3   QRAITMGGAPEGFDARLILKEVQSSGAPVLHVARDDKRMEAMRAALAFFAPEMPVFVF-- 60

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL---LERNDCIVVSSVSCIYGI 284
                      P  D       S N  I   R +   +L   + +   ++ +  +    +
Sbjct: 61  -----------PGWDCLPYDRVSPNADISAARMATLAALVHQMPKQFVLLTTLNAASQRV 109

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
            + E   +     ++   ++++ L S LV+  + +    +  G + + G  I+IFP   E
Sbjct: 110 PAREVLREAAFTARVDQRIDEEALRSFLVRMGFTQSPTVMEPGDYAIRGGIIDIFPP-GE 168

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
               R+ +FG+ ++    F P++ +    +E +++   S  +     +    +  + E  
Sbjct: 169 SGPVRLDLFGDVLDGARRFDPVSQRTTEKLEVVELAPVSEVILDEAAITRFRQNYRIE-- 226

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                    G                E +      Q IE++  +       E   TLF+Y
Sbjct: 227 -----FGAAGTD----------DPLYEAVSAGRKHQGIEHWLPFFH-----EKLETLFDY 266

Query: 465 IPEDSLLFVDESHVT-IPQISGMYRGDFHRKATLAEYG 501
           +P+ S+   D+   + + +   +      RK  + + G
Sbjct: 267 LPQASVTLDDQVTPSRLARWDSIEDQYQTRKHAMTQKG 304



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 74/187 (39%), Gaps = 9/187 (4%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 745 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA-IRTYVSEFDSVTIREALLREHYR 803

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ E+L  +   + Y+  H ++   E  + +     GK+DVL+  
Sbjct: 804 GGQSFYVVPRITDLPEVEEFLKAQLPELTYVVAHGQMAAGELDDRMNAFYDGKYDVLLAT 863

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+             + +  
Sbjct: 864 TIVESGLDIPTANTMVVHRADMFGLSQ----LYQIRGRVGRSKTRAYAYLTTKPRQRLTP 919

Query: 700 AIDETTR 706
           A ++  R
Sbjct: 920 AAEKRLR 926



 Score = 42.4 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 12/124 (9%)

Query: 117 LKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLG 175
           L+   +  P      +   +    F     Y  + DQ  AI  +++ +HS +   +L+ G
Sbjct: 572 LRKAPVMDPP----PHAWEEFSARF----PYQETDDQLRAIEDVMEDLHSGQPMDRLICG 623

Query: 176 VTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
             G GKT      A V         V+AP  +LA Q  + FK  F    +E         
Sbjct: 624 DVGFGKTEVAMRAAFVAAMSGLQVAVVAPTTLLARQHAASFKGRFRGFPLEVRQLSRFVA 683

Query: 233 QPEA 236
             EA
Sbjct: 684 AKEA 687


>gi|58038544|ref|YP_190508.1| transcription-repair coupling factor [Gluconobacter oxydans 621H]
 gi|58000958|gb|AAW59852.1| Transcription-repair coupling factor [Gluconobacter oxydans 621H]
          Length = 1173

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 148/448 (33%), Gaps = 51/448 (11%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
            + GV      F + + +     P + +A +    A L        P   V         
Sbjct: 23  TVWGVPDGSVAFLLRQRLAEHDGPLLHVARDDAAVAALADMLAWLMPEVEVLR------- 75

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER---NDCIVVSSVSCIYGIGSVE 288
                 +P  D       S N  +   R      LLE       ++ +  S I  +    
Sbjct: 76  ------LPAWDCLPYDRVSPNPVLIAERAGTLCRLLEPTKARRIVLTTVHSLIQRVPPRS 129

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           ++    + +K G+S++Q  L+  L+   Y R D  +  G F   G   ++F +  E    
Sbjct: 130 AFRGQSISVKTGESLDQAMLIELLIANGYTRTDTVMEAGEFATRGGIFDLFLA-GESDPI 188

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+ +FG+++E I  F   T +    ++  ++   S +     +++            R  
Sbjct: 189 RLDLFGDEVENIRAFDVGTQRSTETLKCFELRPVSEFSLGPDSISRF----------RTG 238

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
             +  G    +  + + ++              +E+Y       + G    TL +Y+P  
Sbjct: 239 WRDSFGPAATSDTIYENVS-------DGRRYPGLEHYLPLFHDGD-GHQMETLLDYLPGG 290

Query: 469 SLLFVDE-SHVTIPQISGMYRGDFHRKATLAEYGFRL--PSCMDNRPLRFEEWNCL---R 522
           ++ F      +   ++  +      R+    E G  L  P       L    W  +    
Sbjct: 291 AVSFDHHAPEILKARLDMIADHYQARRVPTRE-GEILYRPLPPHRLYLDAHGWESMLADV 349

Query: 523 PTTIV-VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           P+ I+   A P            V+   RP G +    +  S     E    ++   A+ 
Sbjct: 350 PSVILNAFAMPD-------TAQGVDAGYRP-GPLFARAKDGSRAGMFEAFGQQVKTWAEA 401

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRV 609
           G R  +T  ++   E ++  L E  +  
Sbjct: 402 GRRTYVTAWSRGSRERISHLLAEHGVTT 429



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 11/172 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             + +SATP    L+     + E  +    PT  +     I    + +  + + I     
Sbjct: 767 HVLTLSATPLPRTLQLSLSGVREMSLIATPPTDRLAVRTFITPFDSVM--IREAIQRERF 824

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G +I   V      + + E L E     + +  H  +   E   ++ +   GK+D+L+ 
Sbjct: 825 RGGQIFCVVPRLADMDRMAERLTEIVPDAKTVQAHGRLTPTELERVMTEFADGKYDILLS 884

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            N++  GLD+P    + I  AD  G  +    L Q  GR  R          
Sbjct: 885 TNIVESGLDMPSVNTIIIHRADMFGLGQ----LYQLRGRVGRGKQRGYAYMT 932


>gi|319404239|emb|CBI77832.1| transcription repair coupling factor [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 1166

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 89/520 (17%), Positives = 170/520 (32%), Gaps = 98/520 (18%)

Query: 175 GVTGSGKTFTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           GV    + F +AK+   +   +P + +  +    A L        P+ +V  F       
Sbjct: 21  GVVDGFEAFALAKLSAEIAQDKPLVYVVRDGTKMAYLQQALNFIEPNLSVFQF------- 73

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-----RNDCIVVSSVSCIYGIGSV 287
                 P  D       S    I   R SA   + +     R   I+ ++ + I  +   
Sbjct: 74  ------PAWDCLPYDRVSPGIAITARRLSALAHMSDLRKNPRFSIILTTANTVIQKLPPC 127

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDV 346
                 I+ ++IG  ++   L+  L    ++R       G F V G  I+IF PS+ E  
Sbjct: 128 AMIDDQIIHVRIGQCMDMTYLIHYLEHNGFERVATVRDIGEFAVRGGIIDIFSPSYTE-- 185

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  FG  +E I  F P T + I N   + +   S        ++             
Sbjct: 186 PFRLDFFGQTLETIRVFDPETQRTIANKTELFLQPMSEITLTPEFISRFKSN-------- 237

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY-- 464
              +   G   ++  L        E +        +E++          E   + F++  
Sbjct: 238 --YIRSFGVPKKSDML-------YEAISQGRRFSGMEHWLPLFY-----ENLNSFFDHCG 283

Query: 465 -IPEDSLLFVDES----HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP------- 512
            +P      ++E+    +  I       +   + +     Y    P+ +   P       
Sbjct: 284 NLPVVFEHLIEEALIERYRLIVDYYNARKERENNQENDVSYHPIEPNLLYWTPEQVLTCV 343

Query: 513 ------LRFEEWNC---LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
                 + F  +N    L+ T I  +AT G               I+    +D  V    
Sbjct: 344 EQCGLRIDFTPFNISRTLKQTVIHTNATQGYD------------FIKERNALDKNV---- 387

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                  V D I      G ++LL   ++   + L + L E  ++   +   ++T++   
Sbjct: 388 ----FSSVVDHIASLRSSGKKVLLAFWSEGSMDRLLQVLDEHGLQKVEIAKSLQTVKATP 443

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             R        +L  + ++  G +I +   V I + D  G
Sbjct: 444 RDR--------ILAAVLMIEHGFEIED--FVVIAEQDILG 473



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 101/274 (36%), Gaps = 44/274 (16%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L      + E  +  T  +D    +R+  +  + +   + +     +
Sbjct: 768  HVLTLSATPIPRTLSLALSGLRELSLITTPPIDRMA-VRTFISPFDLMVIRETLLREYYR 826

Query: 582  GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +             + EYL      ++++  H ++   +  +I+     G++DVL+  
Sbjct: 827  GGQSFYVCPRISDLSYVEEYLKTHVPEIKFVIAHGQMPAGQLDDIMNAFYDGQYDVLLST 886

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  A+  G     ++L Q  GR  R+      L+     K +  
Sbjct: 887  TIIESGLDIPTANTLIVHRAEMFGL----SALYQLRGRVGRSKQRAYALFTFPSGKVLLP 942

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
            A D    RR K                  +++ +D +       ++        +L  ++
Sbjct: 943  AAD----RRLK------------------VLQSLDTLGAGFQLASHDMDIRGSGNLLGEE 980

Query: 760  GKAHLK----SLRKQMHLAADNLNFEEA-ARIRD 788
               H+K     L ++M         EEA A ++D
Sbjct: 981  QSGHIKEVGFELYQKML--------EEAVAELKD 1006


>gi|209520701|ref|ZP_03269451.1| transcription-repair coupling factor [Burkholderia sp. H160]
 gi|209498863|gb|EDZ98968.1| transcription-repair coupling factor [Burkholderia sp. H160]
          Length = 1159

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 82/502 (16%), Positives = 158/502 (31%), Gaps = 68/502 (13%)

Query: 175 GVTGSGKTFTMAK--VIEAMQRPAIVMAP-NKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G  GS     +A+  +    + P + +   + + A +L  E   F P   V         
Sbjct: 27  GTRGSSDALLIARYHLAYREKMPLLAVVCESAVDAQRLSQEIGFFAPEARVRL------- 79

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESY 290
                 +P  +T      S ++ +   R +    L E     ++V + + +Y +      
Sbjct: 80  ------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFL 133

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +        G+ +++ +L + L    Y+     +  G + V G  +++FP     + +R+
Sbjct: 134 AAYTFSFSQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLLDLFPM-GSPLPYRI 192

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F + ++ I  F P T + +  V+ +++     +                    R    
Sbjct: 193 DLFDDQVDSIRAFDPDTQRSLYPVKDVRLLPGREFPFDE--------------AARTAFR 238

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +     E       I  D   +        IE Y          E   TLF Y+P+ S 
Sbjct: 239 SRWRETFEGDPSRASIYKD---IGNGVPSAGIEYYLPLFF-----EETATLFHYLPDGSQ 290

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
           L +      +  +    R   +         F   S   +RP+   E   L        A
Sbjct: 291 LAL------VGDLDAAIRRFTNDTKQR----FNFLSHDRDRPILEPEKLFLSDQDFFTFA 340

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
            P +       G     I  P   +D     R A   V  +   ++       R+L    
Sbjct: 341 KPFARLALPTNGDGAWSIALPNLAID-----RHADDPVSALRAYLSTTP---NRVLFAAE 392

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           +    E L + L E  ++     S    L+                +G+  L  G  +P 
Sbjct: 393 SAGRRETLLQLLAENQLKPASADSFADWLKSDARFS----------LGVAPLANGFALPG 442

Query: 651 CGLVAILDADKEGFLRSKTSLI 672
            G+  I + +  G L  +    
Sbjct: 443 DGIAIITETELYGPLARRAGRR 464



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 24/150 (16%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            QV  +++E+     +          ++M E L     E  I V   H ++   E   ++
Sbjct: 815 GQVYFLHNEVETIENR----------RQMLEALV---PEARIAVA--HGQMHERELERVM 859

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RD    + +VL+   ++  G+D+P    + I  +DK G  +    L Q  GR  R+ +  
Sbjct: 860 RDFVAQRANVLLCTTIIETGIDVPSANTILIHRSDKFGLAQ----LHQLRGRVGRSHHQ- 914

Query: 686 VILYADTITKSIQLAIDETTRRRE--KQLE 713
              Y+  +    Q    +  RR E  +Q+E
Sbjct: 915 --AYSYLLVHDPQGLTKQAQRRLEAIQQME 942


>gi|332186186|ref|ZP_08387932.1| transcription-repair coupling factor [Sphingomonas sp. S17]
 gi|332014001|gb|EGI56060.1| transcription-repair coupling factor [Sphingomonas sp. S17]
          Length = 1155

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/457 (16%), Positives = 149/457 (32%), Gaps = 49/457 (10%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           +K I + +    L GV        +A +  A    A+ +  ++    +L S    F P  
Sbjct: 4   IKTILTAQSPLTLSGVPAGFLPVLLADLARAATTRAVFVCADEAQMRELASTATYFAPEL 63

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI---VVSS 277
            V               +P  D      +S   ++   R +    L  +       + ++
Sbjct: 64  EVLQ-------------IPAWDCLPYDRASPTLRVMAERIAGLHRLQAKPKTPQLVLTTA 110

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            +    + +     Q++ +L  G+ +  ++L + L    Y R +    +G F V G  ++
Sbjct: 111 NAATQRVLTPFRIRQLVARLAPGERIGLEKLSTLLQANGYVRTETVHDQGEFAVRGGLVD 170

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           +FPS  E+ A R+  FG++IE +  F P   +    ++   +   S  +    ++     
Sbjct: 171 LFPS-GEEQALRLDFFGDEIESVRTFDPSDQRTTGRIDGFTLLPASEALLDEESIKRF-- 227

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
                   R    E  G       L Q ++              +E++          + 
Sbjct: 228 --------RTRYRETFGATATGDPLYQAVS-------EGRRMAGMEHWLPLFE-----DK 267

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQIS----GMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             TLF+++ + +++  D                Y  +  R        FR P    +  L
Sbjct: 268 LSTLFDHLGDGAVVVRDNGVAAAASGRFDAIADYYENRKRAEAAQPGSFR-PLPAKSLYL 326

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
             +EW+           +P   E E       E      G  D   E  +     E V D
Sbjct: 327 TPKEWDAGLEAATAHLVSP-FHEPESATVFDFE----VDGARDFAPERAAHANIYEAVVD 381

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
            +    + G + +L   +    E L   L +  ++  
Sbjct: 382 HVEALRKDGRKPVLASYSNGARERLGSLLKDHGLKGA 418



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 71/183 (38%), Gaps = 9/183 (4%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + E  +  T  VD    +R+     +   + + +     +
Sbjct: 760 HMLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLA-VRTYVMPWDPVVLREALLREHYR 818

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +  L         D+ EYL +    VRY+  H ++   E  E +      KF+VLV  
Sbjct: 819 GGQSFLVTPRVADLPDIEEYLRKEVPEVRYVVAHGQMSPTEVEERMSAFYDRKFEVLVST 878

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + +  AD+ G  +    L Q  GR  R+             + +  
Sbjct: 879 TIIESGIDIPSANTMIVNRADRFGLAQ----LYQLRGRVGRSKTRAYAYMVTPPERMMTE 934

Query: 700 AID 702
           A +
Sbjct: 935 AAE 937


>gi|319953407|ref|YP_004164674.1| transcription-repair coupling factor [Cellulophaga algicola DSM
           14237]
 gi|319422067|gb|ADV49176.1| transcription-repair coupling factor [Cellulophaga algicola DSM
           14237]
          Length = 1125

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 98/248 (39%), Gaps = 14/248 (5%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   +   +      + +  + G+ GS  +F +    +    P +++  +K  AA   ++
Sbjct: 15  QLQKLHTAISNFEKEKGIINIKGLIGSSLSFVLTDAFKNANTPFLLIFNDKEEAAYHLND 74

Query: 213 FKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
            +       V ++  SY   YQ           IE+  + N  +     +   S  ++  
Sbjct: 75  LEQMIGEKDVLFYPGSYRRPYQ-----------IEETDNANVLLRAEVLNRINS-RKKPA 122

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            IV    +    + + +   +  +++KI DS+    L   L + ++KR D     G F V
Sbjct: 123 VIVTYPDALFEKVVTRKELDKNTLKIKIEDSLSLDFLNEVLFEYKFKRVDFVTEPGEFSV 182

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  +++F S   D  +R+  FG+++E I  F   T   +  +  I I  N        +
Sbjct: 183 RGGIVDVF-SFSNDEPYRLEFFGDEVESIRTFDVETQLSLEKLNKITIIPNVENKFLDES 241

Query: 392 LNTAMKYI 399
             + ++YI
Sbjct: 242 RESFLQYI 249



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 73/200 (36%), Gaps = 11/200 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+       +  +I        P++    R   E + D ++   Q+G 
Sbjct: 708 VLTLTATPIPRTLQFSLMAARDLSVINTAPPNRYPIQSDVIRFSEETIRDAVSYEIQRGG 767

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   +       +    H +++  +   ++     G+FDVLV   +
Sbjct: 768 QVFFIHNRVENIKEVAGLIQRLVPDAKIGIGHGQMEGKKLEILMLAFINGEFDVLVSTTI 827

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA----DTITKSI 697
           +  GLD+     + I +A+  G     + L Q  GR  R+       +     + +T   
Sbjct: 828 IESGLDVSNANTIFINNANNFGL----SDLHQMRGRVGRSNKKAFCYFITPPYEVMTSDA 883

Query: 698 QLAIDETTRRREKQLEHNKK 717
           +  I+   +  E     N  
Sbjct: 884 RKRIEALEQFTELGSGFNIA 903


>gi|294677347|ref|YP_003577962.1| transcription-repair coupling factor [Rhodobacter capsulatus SB
           1003]
 gi|294476167|gb|ADE85555.1| transcription-repair coupling factor [Rhodobacter capsulatus SB
           1003]
          Length = 1148

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/438 (15%), Positives = 143/438 (32%), Gaps = 62/438 (14%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            +P + +A +      + +    F P   V  F             P  D       S N
Sbjct: 25  GKPVLHVARDDRRLEAMRAALAFFDPQAVVLTF-------------PAWDCLPYDRISPN 71

Query: 253 EQIDRMRHSATRSL----LERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
            +I   R +   +L    +     ++ +  +    + + +  +      ++G  ++ K L
Sbjct: 72  PEISAARMATLAALAKGVITGPFVLLTTLSAATQRLPARDLVAGASFSARVGQRIDDKAL 131

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
              LV+  +         G + V G  I+I+P   E    R+ +FG+ ++    F P   
Sbjct: 132 KEFLVRMGFSPVSTVSEPGDYAVRGGIIDIYPP-GEGGPVRLDLFGDVLDGARRFDPANQ 190

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           +    +  I     S  +     +    +  + E           G              
Sbjct: 191 RTTEKLSQIDFAPVSEVILDPAAITRFRQNYRIE-------FGAGGTD----------DP 233

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
             E +        +E++  +   R       TLF+Y+PE +++  D      PQ +  + 
Sbjct: 234 LYEAVSAGRKHAGMEHWLGFFHDRLE-----TLFDYLPEATVMLDD---QVEPQRAARWD 285

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
           G   +  T  E        M+ R      +    P  + +  T     L + + + ++ +
Sbjct: 286 GIADQYDTRRE-------AMNRRDRLDTVYKPAPPELLYLDGTAWESGLARHRVLKLQVL 338

Query: 549 IRPTGLVDPPVEIRSART-----QVED------VYDEINLAAQQGLRILLTVLTKRMAED 597
             P G      E R  R      Q+E+      + D +    +QG  +++   ++   E 
Sbjct: 339 PAPPGPGILNAEGRIGRNFAPERQLENVSLFAALKDHVQARLRQGP-VVIASWSEGARER 397

Query: 598 LTEYLYERNIRVRYMHSE 615
           L   L +  +    + S+
Sbjct: 398 LKGLLEDEGLSGARLISD 415



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 100/287 (34%), Gaps = 43/287 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 741 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA-IRTYVSEFDTVTIREALLREHYR 799

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ ++L      V ++  H ++   E  + +     GK DVL+  
Sbjct: 800 GGQSFYVVPRISDLAEVEDFLRSHVPEVSFIVAHGQMAAGELDDRMNAFYDGKHDVLLAT 859

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+               +  
Sbjct: 860 TIVESGLDIPTANTMVVHRADMFGLSQ----LYQIRGRVGRSKLRAYCYLTTKPRLPL-- 913

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                                 PQ+ K  +++  +D +    +  +         +L  +
Sbjct: 914 ---------------------TPQATKRLRLLGSLDNLGAGFSLASQDLDLRGAGNLLGE 952

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           +   H+K +  +++           A + + I +LKS    +   D 
Sbjct: 953 EQSGHIKEVGYELYQ----------AMLEETISKLKSGELTETTGDG 989


>gi|161870155|ref|YP_001599325.1| transcription-repair coupling factor [Neisseria meningitidis
           053442]
 gi|161595708|gb|ABX73368.1| transcription-repair coupling factor [Neisseria meningitidis
           053442]
          Length = 1371

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 101/282 (35%), Gaps = 36/282 (12%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
            +R  +V+  +   A +L + ++ F PH+                ++P  +T   +  S 
Sbjct: 32  HKRLKVVLTQDAEQALRLQTAWRFFRPHDT-------------AVFLPDWETLPYERFSP 78

Query: 252 NEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++ +   R SA   +     D + V   + +  +  V   +     LK G +++   L +
Sbjct: 79  HQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKT 138

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV   Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + 
Sbjct: 139 DLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRT 197

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  V  I++ +   + T            +EE+                           
Sbjct: 198 ISPVSEIRLLSAHEFPTDSEAQKIFRSRFREEVDG-----------------NPNDAAVY 240

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           + +        +E Y              TLF+YI ED+L  
Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFV 278



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 976  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 1032

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 1033 RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 1090

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 1091 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1139

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1140 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1176

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1177 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1209


>gi|87121321|ref|ZP_01077211.1| Transcription-repair coupling factor [Marinomonas sp. MED121]
 gi|86163478|gb|EAQ64753.1| Transcription-repair coupling factor [Marinomonas sp. MED121]
          Length = 1137

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/494 (14%), Positives = 161/494 (32%), Gaps = 77/494 (15%)

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
           ++ + +  P I++  +     QL SE      +       + ++    +A+ P  D    
Sbjct: 33  EMCQQLDGPLILLVDSVAKINQLESELSFLNNNRVPVLRFADWETLPYDAFSPHQDIISA 92

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           +  ++++  D            R   ++ +  S    +            +  G  +  +
Sbjct: 93  RLETLSQLAD-----------LRQAIVITTLASANSRLCPKSHIDAQRFVVSEGQKLPLE 141

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +L S L    Y   +     G F + G  ++++P    +   R+  F ++I+ +  F   
Sbjct: 142 KLASQLTSGGYLHVESVREHGEFAIRGALMDVYPMGANN-PIRIDWFDDEIDSLRWFDAE 200

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           T +    +  +K+         +       +  +++ + R      +             
Sbjct: 201 TQRSTEKLSALKMLPAREIPASQE----GCQTFRQKWRERFSSSPLD------------- 243

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGM 486
           T   + +        IE Y      +       + F+Y+P++S L ++E   T  Q+  +
Sbjct: 244 TPIYQDVSNGIIPAGIEYYLPLFFNKTE-----SFFDYLPKNSALVLNEDIGT--QLDFL 296

Query: 487 YRGDFHRKATLAEYGFRL------PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
                 R  +L   G+ L      P  ++ R  + E +  L+         P     +  
Sbjct: 297 DSEFKARHESL---GYNLERPILEPHEINLR--KEEFFQQLKSF-------PQIRINKGA 344

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
                      T L +  +E + A+  +  + D +     +  R L+   T    E L E
Sbjct: 345 HQHF-------TLLPNLILESK-AKNPIHKLADFL---TNKNQRTLIVAETAGRREALLE 393

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
            L E  I+            + +  +   L K  + +    L  G  + +  +  I + +
Sbjct: 394 LLSEYKIK----------PIQCDSWQTFLLNKDTLSITTGSLENGFILDQ-NIAVIAEQE 442

Query: 661 KEGFLRSKTSLIQT 674
             G   S     QT
Sbjct: 443 ILGERVS-QHRRQT 455



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 81/207 (39%), Gaps = 19/207 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVED 570
           +++  LR     + ++ATP    L     GI    II   P   +     ++        
Sbjct: 734 DQFKALRSEVDILTLTATPIPRTLNMSLSGIRDLSIIATPPAKRLSVNTFVKKKDNHT-- 791

Query: 571 VYDEINLAAQQGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           V + I     +G ++      V T  + AE+L E + E  I +   H +++  +  +++ 
Sbjct: 792 VKEAILRELHRGGQVYFLHNDVQTIAKAAEELAELIPEGRILIG--HGQMRERDLEQVMS 849

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D    + ++LV   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +   
Sbjct: 850 DFYHKRANILVCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAY 905

Query: 687 ILYADTITKSIQLAIDETTRRREKQLE 713
                   +++    D   R    QL 
Sbjct: 906 AYLLTPEDRNVTK--DAQKRLEAIQLA 930


>gi|293189923|ref|ZP_06608603.1| transcription-repair coupling factor [Actinomyces odontolyticus
           F0309]
 gi|292821142|gb|EFF80089.1| transcription-repair coupling factor [Actinomyces odontolyticus
           F0309]
          Length = 427

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/462 (15%), Positives = 147/462 (31%), Gaps = 75/462 (16%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            AI   +  + +  +   ++   G  +   +A V      P +V+      A  L +   
Sbjct: 14  PAIETAIDSVEAG-RSGTIVAPVG-IRPPLLAAVASRAATPLVVLTATGRDAESLTNALA 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           ++ P  A+      ++    E   P+ DT   + +     + R+ H  T         ++
Sbjct: 72  SWIPGVAML---PAWETLPHERLSPQVDTMARRIAV----LRRLVHPITGDDSAGPMSVL 124

Query: 275 VSSVSC-----IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
           V  +       I G+  +E        ++ GD ++  E  + L +  Y+R D+   RG  
Sbjct: 125 VVPIRAFLQPIISGLADLEPVR-----VRTGDILDLTETTNRLAELGYERVDMVEGRGQM 179

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIKIYANSHYVTP 388
            V G  +++FP   E    RV ++G+++++I  F     + +    + +        +  
Sbjct: 180 SVRGGILDVFPP-QEPHPLRVELWGDEVDDIRAFSVSDQRTLGEAADGLWAVPCRELLLT 238

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
           R     A +            L     +L                    +   IE+ +  
Sbjct: 239 RAVRARAREA--------ADRLPGAAEMLSLA-------------AEGIAAPGIESLAPI 277

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH---------------- 492
           L G        +L + +P  S +   +      + + +                      
Sbjct: 278 LVGGME-----SLLDLLPAGSPILASDPERIRARAADLVATTEEFLAAAWSAAAGGADTP 332

Query: 493 ---RKATLAEYGFRLPSCMDNRPLRFEEWNCLR--PTTIVVSATPGSWELEQCQGIIVEQ 547
               KA+  +      S   NRP     W  L   P   + SA   +             
Sbjct: 333 LEASKASFLDLADLWGSG--NRP-----WWELTDLPPADLASAIDEAEADSPSTDGPAPV 385

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
           ++ PT +     ++   R        ++   A+ G RI++T 
Sbjct: 386 VVSPTLMRVGARDVHPYRGDFARAAADLTDLARDGWRIVVTT 427


>gi|163786687|ref|ZP_02181135.1| transcription-repair coupling factor [Flavobacteriales bacterium
           ALC-1]
 gi|159878547|gb|EDP72603.1| transcription-repair coupling factor [Flavobacteriales bacterium
           ALC-1]
          Length = 1096

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 91/245 (37%), Gaps = 16/245 (6%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +  L   I   E    L G+ GS  +  +++  +  ++P +++  +K  AA   ++ +  
Sbjct: 3   LQNLRNVIAQSENKFHLKGLVGSSFSIVISEAFKTAEKPFLLIFDDKEEAAYYLNDLEQL 62

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN--DCIV 274
                V ++   Y                 +    N     +R      +  R     IV
Sbjct: 63  INDKDVLFYPGSYRR-------------PYQIEETNNANVLLRAEVLNRINSRKKPCVIV 109

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
               +    + + +   +  +++ +G+ +    +   L + ++KR D     G F V G 
Sbjct: 110 TYPDALFEKVVTKKELEKNTLKISVGNELSIDFVNEVLFEYKFKRVDFVTEPGEFSVRGG 169

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I++F S   D  +R+  FG++++ I  F   T      ++ + I  N           +
Sbjct: 170 IIDVF-SFSHDEPYRIEFFGDEVDSIRTFDVETQLSTERIKKVSIIPNVANKLIAEQRES 228

Query: 395 AMKYI 399
            +KYI
Sbjct: 229 FLKYI 233



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 73/187 (39%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+       +  +I        P+E    R   E + D ++   Q+G 
Sbjct: 691 VLTLTATPIPRTLQFSLMAARDLSVITTAPPNRYPIESHVIRFAEETIRDAVSYEIQRGG 750

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   +       +    H ++   +   ++     G+FDVLV   +
Sbjct: 751 QVFFIHNRIENIKEVAGMIQRLVPDAKIGIGHGQLDGKKLEHLMLSFMNGEFDVLVSTTI 810

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+P    + I +A+  G     + L Q  GR  R+ N K   Y  T   S   A+
Sbjct: 811 VESGLDVPNANTIFINNANNFGL----SDLHQMRGRVGRS-NKKAFCYFITPEYS---AM 862

Query: 702 DETTRRR 708
               R+R
Sbjct: 863 TTDARKR 869


>gi|113867469|ref|YP_725958.1| transcription-repair coupling factor [Ralstonia eutropha H16]
 gi|113526245|emb|CAJ92590.1| Transcription-repair coupling factor [Ralstonia eutropha H16]
          Length = 1149

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 81/509 (15%), Positives = 171/509 (33%), Gaps = 82/509 (16%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPNK-ILAAQLYSEFKNFFPHN 220
           +    +   + G+ GS     +A      +   P + +  +  + A +L  E   F P  
Sbjct: 16  VKPGLRHS-VAGLRGSADALAVAAYARQHRERAPMLAVVCSHAVDAQRLAEEIPWFAPEL 74

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVS 279
            V               +P  +T      S ++ +   R +    +       ++V + +
Sbjct: 75  RVRL-------------LPDWETLPYDSFSPHQDLVSERLATLHDIQTGQCDVMLVPATT 121

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
            +Y +      +      K G+ +++  L +      Y+     +  G + V G  I+++
Sbjct: 122 ALYRLAPPAFLAAYTFFFKQGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLY 181

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P     + +R+ +FG++IE I  F P T + +  V+ +++     +        TA +  
Sbjct: 182 PMGSA-LPYRIDLFGDEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLD-EAARTAFRGR 239

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
             EL          G   +        +   + +        IE Y          E   
Sbjct: 240 WRELFE--------GDPTK--------SPIYKDIGNGVPSAGIEYYLPLFF-----EQSA 278

Query: 460 TLFEYIPEDSLLF----VDESHVTI----PQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
           T+F+Y+P D+ L     VDE+         Q     R D  R          LP    + 
Sbjct: 279 TVFDYLPADTQLAFAGNVDEAIRRFWADTTQRYNFMRHDRERP--------LLPPA--DL 328

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            L  E++         V+A P +  + Q +    +        + P V +       + +
Sbjct: 329 FLSEEQF--------FVAAKPMARLVLQAEANADQA---AFSAILPDVAVNRRAD--DPL 375

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +   L   Q  R+L+   +    E L +   E  +R           + ++       G
Sbjct: 376 VNLEALLLDQQTRVLMCADSAGRRETLLQLFAESGLR----------PQPVDDFAAFLAG 425

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDAD 660
           +    + +  L+ G  +P+  +  + +A+
Sbjct: 426 EAHFSIAVAPLQSGFALPQGQIAFVTEAE 454



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 20/198 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + I    ++
Sbjct: 758 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGV--IREAILRELKR 815

Query: 582 GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E+    L E + E  I V   H ++   E   ++RD    + ++L+
Sbjct: 816 GGQVYFLHNEVETIENKRARLAELVPEARIAVA--HGQMHERELERVMRDFVARRDNILL 873

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  +DK G  +    L Q  GR  R+ +     YA  +   +
Sbjct: 874 CTTIIETGIDVPTANTILIHRSDKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLVHDV 926

Query: 698 QLAIDETTRRRE--KQLE 713
           +    +  RR E  +Q+E
Sbjct: 927 EGLTKQAQRRLEAIQQME 944


>gi|311743167|ref|ZP_07716975.1| transcription-repair coupling factor [Aeromicrobium marinum DSM
           15272]
 gi|311313847|gb|EFQ83756.1| transcription-repair coupling factor [Aeromicrobium marinum DSM
           15272]
          Length = 1169

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 87/258 (33%), Gaps = 33/258 (12%)

Query: 154 PAAIAQLLKGI-------------HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           P A+  L   +                     L G   + + F    +        + + 
Sbjct: 12  PPALRDLAARLTAEPAIVAALGDRDDGVHEVALRGPA-AMRPFVTQALAGVTT--VLAVT 68

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
                A  L          +AV  F ++ +    E   PR+DT   + ++    + R+ H
Sbjct: 69  ATAREADDLARVLSASLGPDAVVSFPAW-ETLPHERLSPRSDTVGRRLAT----LRRLVH 123

Query: 261 SA---TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
                 R ++     ++   V  +  +  VE        +++GD  E   L+  L    Y
Sbjct: 124 PVGAPPRVVVAPVRSVLQPQVRGLADLTPVE--------IRVGDDHELDALVRDLAAAAY 175

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R D+   RG F V G  +++FP   E+   R+  +G+ +EEI  F     + +  V+ +
Sbjct: 176 TRVDLVERRGEFAVRGGIVDVFPP-TEEHPLRLEFWGDTVEEIRRFAVADQRTLEPVDHV 234

Query: 378 KIYANSHYVTPRPTLNTA 395
                   +        A
Sbjct: 235 WAPPCRELLLTDAVRARA 252



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQVEDVYDEINLAAQ- 580
            + +SATP    LE     I E     T    PP E           ED      +  + 
Sbjct: 777 VLSMSATPIPRTLEMAVTGIREMSTIAT----PPEERHPVLSFVGPYEDRQVVAAIRREL 832

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +        +  +     L +    +RV   H ++   +  +++ D    ++DVLV
Sbjct: 833 LREGQAFYIHNRVQSIDKAVARLRQLVPEVRVAAAHGQMSEAQLEQVMLDFWEKRYDVLV 892

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLD+     + I  +D  G  +    L Q  GR  R        +     K  
Sbjct: 893 CTTIVESGLDVSNANTMIIERSDTLGLSQ----LHQLRGRVGRGSERAYAYFLYPPDKP- 947

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 948 ---LTETAHDRLATIAQHSELG 966


>gi|91215486|ref|ZP_01252457.1| transcription-repair coupling factor [Psychroflexus torquis ATCC
           700755]
 gi|91186438|gb|EAS72810.1| transcription-repair coupling factor [Psychroflexus torquis ATCC
           700755]
          Length = 1121

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 102/247 (41%), Gaps = 19/247 (7%)

Query: 157 IAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           I +L + + S EK Q+ + G+ GS  +F  ++     +RP +++  +K  AA   ++ + 
Sbjct: 16  IKELSETLLSGEKKQIFIKGLIGSAVSFVQSESFLKSERPFLLVFNDKEEAAYHLNDLEQ 75

Query: 216 FFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--C 272
                 V ++  SY   YQ           IE+  + N     +R      +  R     
Sbjct: 76  LVDEKNVLFYPGSYRRPYQ-----------IEETDNANIL---LRSEVLNRINSRKKPSI 121

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           IV    +    + + +   + ++++ + D +    +   L +  +KR D     G F V 
Sbjct: 122 IVTYPEAIFEKVVTKKELDRTVLKINLNDELSIDFVNEVLFEYNFKRVDFVTEPGEFSVR 181

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  I++F S   D  +R+  FG++I+ I  F   T    +  + I I  N   V      
Sbjct: 182 GGIIDVF-SFSNDEPYRIEFFGDEIDSIRAFDVETQLSTKQKKRIDIMPNVEKVQLDEVR 240

Query: 393 NTAMKYI 399
            T ++YI
Sbjct: 241 QTFLEYI 247



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 8/177 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +   I+       P+E    R   + + D ++   ++G 
Sbjct: 706 TLTLTATPIPRTLQFSLMAARDLSTIKTPPPNRYPIETHVIRFSEDQIRDAVSYEIERGG 765

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++           ++   +       +    H +++  +   ++      +FDVLV   +
Sbjct: 766 QVFFINNRIENINEVAGLIQRLVPDAKIGIGHGQMEGKKLENLMLQFMNNEFDVLVSTTI 825

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           +  GLD+     + I  A+  G     + L Q  GR  R+ N K   Y  T   ++ 
Sbjct: 826 IESGLDVTNANTIFINSANNFG----MSDLHQMRGRVGRS-NKKAFCYLITPPLTMM 877



 Score = 40.8 bits (94), Expect = 0.87,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A   G ++ + V T     +  +  TE L E  + V Y++    T ER
Sbjct: 588 GKTEIAIRAAFKAVDNGKQVAVLVPTTILAFQHHKTFTERLSEFPVTVDYLNRFRTTKER 647

Query: 622 IEIIRDLRLGKFDVLVGI-NLLREGLDIPECGLVAILDADKEG 663
             ++  L  G  D+++G   L+ + +     GL+ I +  K G
Sbjct: 648 RSVLEGLEDGSVDIVIGTHQLVSKAVKFKNLGLLIIDEEQKFG 690


>gi|325928058|ref|ZP_08189271.1| transcription-repair coupling factor Mfd [Xanthomonas perforans
           91-118]
 gi|325541556|gb|EGD13085.1| transcription-repair coupling factor Mfd [Xanthomonas perforans
           91-118]
          Length = 1110

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 93/273 (34%), Gaps = 34/273 (12%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+A +   A Q+ ++        A            P    P  +T    + S + +I
Sbjct: 1   MLVIARDNQSAHQIEADLHALLGEQAAL----------PVVPFPDWETLPYDQFSPHPEI 50

Query: 256 DRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
              R +A   L      +V+  V   +  +  +         L +G  ++       L  
Sbjct: 51  ISQRLAALHRLPGLTRGVVIVPVQTLLQQLAPLSYIVGGSFDLTVGQRLDLDAEKRRLES 110

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y+     +  G F V G  +++FP    D   RV +   DI+ I  F P + + +  V
Sbjct: 111 AGYRNVPQVMDPGDFAVRGGLLDVFPM-GADTPLRVELLDEDIDSIRVFDPESQRSLDKV 169

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           + +K+           ++   +      L+ R               ++ R +   + L+
Sbjct: 170 DAVKMLPGREVPMDDASVERVLAC----LRERFD-------------VDTRRSALYQDLK 212

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
           +  +   IE Y      +       TLF+Y+ +
Sbjct: 213 SGLAPSGIEYYLPMFFAKT-----ATLFDYLDK 240



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           RM  DL+E + E  I +   H ++   E   ++ D +  +F+VL+   ++  G+DIP   
Sbjct: 788 RMQRDLSELVPEARIGIA--HGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNAN 845

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            + I  AD+ G  +    L Q  GR  R+ +           +S+
Sbjct: 846 TIIINRADRFGLAQ----LHQLRGRVGRSHHRAYAYLVVPDRRSM 886


>gi|284048953|ref|YP_003399292.1| transcription-repair coupling factor [Acidaminococcus fermentans
           DSM 20731]
 gi|283953174|gb|ADB47977.1| transcription-repair coupling factor [Acidaminococcus fermentans
           DSM 20731]
          Length = 1092

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/272 (20%), Positives = 109/272 (40%), Gaps = 23/272 (8%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIE--AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
               L G+TGS K   +  + E     +P +++  N+        E  +F+P  A     
Sbjct: 27  GPLQLTGLTGSVKAGFLCALQETVQAAQPLVILTVNRESIRAQRRELAHFYPDLA----- 81

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIG 285
              + Y       + DT        NEQ+   R +A   ++ +   I+ ++  + I  + 
Sbjct: 82  -MRELYPASLIHGQVDT-------RNEQVMAERAAALEMIVRKEPGIIFATAEAAIQKLP 133

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
             ES  +  ++L +G  +EQ  ++  LVK  Y+R +     G   V GD +++FP + +D
Sbjct: 134 QPESLVRENLKLAVGQEIEQSLVVEKLVKAGYERTEQVDTLGQVAVRGDILDVFPINGKD 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE--- 402
            + R+  F N I+ +  F   T + I  +  + I   +  V  +    +  +Y+  +   
Sbjct: 194 -SVRIEWFDNTIDAMKRFDLDTQRSIGTISQVGIMPLA--VPNQEISASLFQYLSADQLA 250

Query: 403 -LKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            L   +   E+  +     R       D E +
Sbjct: 251 VLDEPVAFFEECKKSWGDNREFADQLLDQETM 282



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 65/187 (34%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L        +  II        PVE   A      V + +    ++G 
Sbjct: 702 VLTLSATPIPRTLHLALVKGRDMSIIESPPEDRLPVETYVAEYDDGMVREALEREIRRGG 761

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           RI            +  +L E    I +   H  +   E  +++     G FDVL+   +
Sbjct: 762 RIYYVHNRIEGLSRIAAHLRELVPGITIGLAHGRMTEDELEDVMLGFYQGDFDVLLSTTI 821

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+P    + I  A+  G  +    L Q  GR  R+       +           +
Sbjct: 822 IENGLDVPLANTIIIDGAENFGLSQ----LYQMRGRVGRSSRLAYAYFLYKKD----RVL 873

Query: 702 DETTRRR 708
            E  ++R
Sbjct: 874 SEVAQKR 880


>gi|118471657|ref|YP_889663.1| transcription-repair coupling factor [Mycobacterium smegmatis str.
           MC2 155]
 gi|118172944|gb|ABK73840.1| transcription-repair coupling factor [Mycobacterium smegmatis str.
           MC2 155]
          Length = 1215

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 91/534 (17%), Positives = 166/534 (31%), Gaps = 68/534 (12%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+A     A +L +E +  F   +V  F S+ +    E   P  +T   +   +   
Sbjct: 61  PLLVVAATGREADELTAELRGVFGD-SVALFPSW-ETLPHERLSPGVETVGARLMLLRRL 118

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
                       L     +VV++   +    + +      V L +G  +E +++++ LV 
Sbjct: 119 A-----RPDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVD 173

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R D+   RG F V G  +++FP   E    RV  +G++I E+  F     + I  V
Sbjct: 174 LSYTRVDMVGKRGEFAVRGGILDVFPPTAE-HPVRVEFWGDEISEMRAFAIADQRSIPEV 232

Query: 375 E--TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL-E 431
              T+        +        A     E                  +        D+  
Sbjct: 233 PVQTVVAVPCRELLMTDDVRERAAALAAE--------------HPTTENTVPGTVPDMLA 278

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
            L        +E     L        P TL  ++PE + + V +      + + + +   
Sbjct: 279 KLAEGIPVDGMEALLPLLHPIE----PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGR 334

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ--------CQGI 543
                  E  +   +   + P+  E             A   + E               
Sbjct: 335 E----FLEASWSTAAVGGDAPIDLEALGA-SGFVTFEEAREAAREGGHPWWTLSQLSDES 389

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
            VE  IR           R ++  +E+++  +      G    +       A  + E L 
Sbjct: 390 AVELDIRSAPSA------RGSQHNLEEIFAMLRAHVATGGYAAVVTPGIGTAHRVVEQLG 443

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           E +     +          E     + G   VL G   L  G+ +P   LV I + D  G
Sbjct: 444 EADTAATIL----------EPGTAPKAGVVGVLKGP--LCSGVVLPGANLVIITETDLTG 491

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKS---IQLAIDETTR-----RRE 709
              +     +   +    V+   +   D +      I   ++ T R     RRE
Sbjct: 492 NRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVGGARRE 545



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E     T V   +D      L  + 
Sbjct: 793 VLTMSATPIPRTLEMSLAGIREM----STILTPPEERYPVLTYVGPHDDKQVAAALRREL 848

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +        R  ++    + +     R +  H ++      + +      ++D+LV
Sbjct: 849 LRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEKTVEGFWNREYDILV 908

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +     K  
Sbjct: 909 CTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPPNKP- 963

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N +  
Sbjct: 964 ---LTETAYDRLATIAQNNELG 982


>gi|115351983|ref|YP_773822.1| transcription-repair coupling factor [Burkholderia ambifaria AMMD]
 gi|115281971|gb|ABI87488.1| transcription-repair coupling factor [Burkholderia ambifaria AMMD]
          Length = 1185

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/461 (15%), Positives = 149/461 (32%), Gaps = 77/461 (16%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFF 217
           +  +   ++     G  GS     +A+ +   +       V+  N + A +L  E + F 
Sbjct: 42  VARVKPGQRFAFD-GTHGSADALAIARYLAENRAAVPLLAVICANAVDAQRLSQELRYFS 100

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVS 276
           P   V               +P  +T      S ++ +   R +    L E     ++V 
Sbjct: 101 PDARVRL-------------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVP 147

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + + +Y +      +        G+ +++ +L + L    Y+     +  G + V G  I
Sbjct: 148 ATTALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLI 207

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +++P     + +R+ +F + ++ I  F P T + +  V  +++     +           
Sbjct: 208 DLYPM-GSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVREVRLLPGREFPFDEAA----- 261

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
              +   + R  E  +                  + +        IE Y          +
Sbjct: 262 ---RTAFRSRWRETFEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----D 304

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TLF Y+P+D+ L        +      +  D  ++     +    P           
Sbjct: 305 ETATLFHYLPQDAHLVFTGD---LEASIRRFTADTKQRHAFLSHDRERP----------- 350

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP--------TGLVDPPVEIRSARTQV 568
               L P  + +S      E          +++ P        TGL +  V         
Sbjct: 351 ---ILEPQRLFLS-----DEDFFAFAKPFARVVLPAQPAGGWATGLPELTV-----DRHA 397

Query: 569 EDVYDEINLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +D    +    +  G R+LLTV +    E + + L E ++R
Sbjct: 398 DDPLAALRTFVESSGKRVLLTVESAGRRETILQLLAEHHLR 438



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 784 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 841

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L E     R +  H ++   E   ++RD    + +VL+  
Sbjct: 842 GGQVYFLHNEVETIENRRAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 901

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +S+  
Sbjct: 902 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQSLTK 957

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 958 ---QAQRRLEAIQQME 970


>gi|237748656|ref|ZP_04579136.1| transcription-repair coupling factor [Oxalobacter formigenes
           OXCC13]
 gi|229380018|gb|EEO30109.1| transcription-repair coupling factor [Oxalobacter formigenes
           OXCC13]
          Length = 1152

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/493 (15%), Positives = 164/493 (33%), Gaps = 65/493 (13%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP---AIVMAPNKILAAQLYSEFKN 215
            L K +    +   +  + GS     +AK  + ++      + +  N   A +L  E   
Sbjct: 4   DLKKFLPRPGQRYAMPALHGSADALVLAKAAQDLKSRQQMLVAIVANASDARRLLEE--- 60

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIV 274
                 + +F    +       +P  +T      S ++ +   R +    +       ++
Sbjct: 61  ------IPWFSDETEEPLRCHLLPDWETLPYDSFSPHQDLVSQRLATLYEVSNGRCDVLL 114

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           V + + +  I      +      K G+++++++L S L    Y      +  G + V G 
Sbjct: 115 VPASTALLRIAPPAFLAAHTFYFKQGETLDEEKLKSQLTIAGYNHVSQVMSPGEYSVRGG 174

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I++FP     + +R+ +FG+ IE I  F P   + +  V  I++     +     +   
Sbjct: 175 LIDLFPM-GSKLPYRLDLFGDTIETIRTFDPDNQRSLYPVREIRMLPGHEFPMDENSR-- 231

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
                               R  E    +  ++     + +  +   IE Y         
Sbjct: 232 -------------AFFRS--RWREVFEGDPTLSVIYRDIASGIASAGIEYYLPLFF---- 272

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
            E   TLF Y+PE+++  +             +     R   L     R     +   L 
Sbjct: 273 -EETTTLFRYLPENAVFAM--IGNVNEAFQRFWADTQSRYNFLKSDRERPLLAPEKLFLT 329

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            E++         V A P +         +++    P+ L  P  ++ S   + +D    
Sbjct: 330 SEDF--------FVLAQPFA-------RWVIQTDDAPSELSAPIPDV-SVNRRADDPLAN 373

Query: 575 INLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +    ++   R+++   +    E + ++  E + +V                 D    K 
Sbjct: 374 LRAYIKRADKRVMICAESPGRRETMQQFFNEYDFKVTPCTG----------FADFATSKE 423

Query: 634 DVLVGINLLREGL 646
            V+ GI+ +++G 
Sbjct: 424 QVMFGISPVQKGF 436



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 20/198 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +RS    V  + +      ++
Sbjct: 756 VLTLTATPIPRTLGMALDGLRSFSIIATAPQKRLAIKTFVRSENDSV--IREACMRELKR 813

Query: 582 GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E+    L   L E  I V   H ++   E  +++RD    ++++L+
Sbjct: 814 GGQVYFLHNEVETIENRRIMLENLLPEARIGVA--HGQMHERELEKVMRDFVSHRYNILL 871

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +          T+++
Sbjct: 872 CTTIIETGIDVPNANTMVMHRADKFGLAQ----LHQLRGRIGRSHHQAYAYLLVNDTQTL 927

Query: 698 QLAIDETTRRRE--KQLE 713
                +  RR E  +Q+E
Sbjct: 928 SK---QAQRRLEAIRQME 942



 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 14/149 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           ++ ++ + Q +  +   L  L    +  ++ G  +      + N++      F     + 
Sbjct: 556 EKAKQKAAQQIHDTAAELLDLYARRS--MRKGFPF----PLTKNDYEAFADSF----GFE 605

Query: 149 PSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFTM--AKVIEAM-QRPAIVMAPNKI 204
            + DQ AAIA +++ +   +   +L+ G  G GKT     A  I  M  +   ++AP  +
Sbjct: 606 ETPDQAAAIASVMEDMTSDKPMDRLICGDVGFGKTEVALRAAFIAVMGGKQVALLAPTTL 665

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           LA Q    F++ F    V          Q
Sbjct: 666 LAEQHAQTFRDRFADWPVRISELSRFRTQ 694


>gi|167563120|ref|ZP_02356036.1| transcription-repair coupling factor [Burkholderia oklahomensis
           EO147]
          Length = 1157

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 104/303 (34%), Gaps = 40/303 (13%)

Query: 175 GVTGSGKTFTMAK--VIEAMQRPAI-VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G  GS     +A+   +   Q P + V+  N + A +L  E   F P   V         
Sbjct: 25  GAHGSADALVIARYLAVHRAQVPLLAVICANAVDAQRLAQELGYFAPDARVRV------- 77

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESY 290
                 +P  +T      S ++ +   R +    L E     ++V + + +Y +      
Sbjct: 78  ------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFM 131

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +        G+ +++ +L + L    Y+     +  G + V G  I+++P     + +R+
Sbjct: 132 AAYTFAFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLYPM-GSPLPYRI 190

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F + ++ I  F P T + +  V  +++     +              +   + R  E 
Sbjct: 191 DLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA--------RTAFRSRWRET 242

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +                  + +        IE Y          +   TLF Y+PE++ 
Sbjct: 243 FEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----DETATLFHYLPENAQ 288

Query: 471 LFV 473
           L  
Sbjct: 289 LVF 291



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 75/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 754 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 811

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L       R +  H ++   E   ++RD    + +VL+  
Sbjct: 812 GGQVYFLHNEVETIENRQAMLEALVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +++  
Sbjct: 872 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQALTK 927

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 928 ---QAQRRLEAIQQME 940


>gi|320161444|ref|YP_004174668.1| transcription-repair coupling factor [Anaerolinea thermophila
           UNI-1]
 gi|319995297|dbj|BAJ64068.1| transcription-repair coupling factor [Anaerolinea thermophila
           UNI-1]
          Length = 1129

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 93/254 (36%), Gaps = 17/254 (6%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A   LL+ + +   +  L  +  S +      + E ++RP  ++      A   + E  
Sbjct: 9   KAYQNLLEDLRAGLPLPGLA-LMRSARIPLAESLREDLRRPVFLITDRADHALYWFDELS 67

Query: 215 NFFPHNAVEYFVSYYD-YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-----E 268
            +     V  F      +Y+P A+           +   ++I  +   A  ++      E
Sbjct: 68  FWAKGLPVYLFPEPVPLFYEPAAW---------GANVRRDRIQVLTLLARYAIPGVSKPE 118

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
               IV    + +        + +   Q++ G ++  + L    V+  Y+  D  +  G 
Sbjct: 119 VPPIIVAPIRAVMTRTLPRREFLKASKQIRQGQTISLEALKRWWVEVGYQPMDTVLEPGQ 178

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           F   G  ++I+P   E    R+  FG++IE +  F P T +KI+ + ++ I      +  
Sbjct: 179 FSHRGGILDIWPP-AETFPVRLEFFGDEIETLRTFDPSTQRKIQPISSVLITPAREVLPG 237

Query: 389 RPTLNTAMKYIKEE 402
           +           +E
Sbjct: 238 KAAELNLALQDVDE 251



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 74/213 (34%), Gaps = 21/213 (9%)

Query: 516 EEWNCLRPTT--IVVSATPGSWEL--EQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVED 570
           E +  LR     + ++ATP    L         + QI  P     P +  I     ++  
Sbjct: 719 EYFKKLRTEVDVLTLTATPIPRTLYMALTGVRDISQINTPPAERLPIITHIGPYSPRL-- 776

Query: 571 VYDEINLAAQQGLRILLT---VLTKRMAED-LTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           V   I    ++G ++      V T    E  L + + E  I +   H ++       ++ 
Sbjct: 777 VRQAILREIERGGQVFFVHNRVQTIHAMEQHLQKLVPEARIGIA--HGQMPEEALSRVMM 834

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
               G+ DVL+  +++  GLDIP    + +   D  G  +    L Q  GR  R      
Sbjct: 835 AFTRGELDVLLCTSIIESGLDIPNANTLIVDRGDTFGLAQ----LYQLRGRVGRGAQR-- 888

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
             YA       +    E   R E  +  N +  
Sbjct: 889 -AYAYFFRHRRKAPTPEGQERLEI-IAENTQLG 919


>gi|226330513|ref|ZP_03806031.1| hypothetical protein PROPEN_04431 [Proteus penneri ATCC 35198]
 gi|225201308|gb|EEG83662.1| hypothetical protein PROPEN_04431 [Proteus penneri ATCC 35198]
          Length = 350

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 116/334 (34%), Gaps = 40/334 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I   +  QL  G +TG+      A++I+      +++  +   A +L  E + F      
Sbjct: 11  IKQGDTRQL--GQLTGAACALECAEIIKRHSGLVVLVTRDMQNALRLQDEIRQFCD---- 64

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-NDCIVVSSVSCI 281
                      P   +   +T      S +++I   R S    +       +++   + +
Sbjct: 65  ----------FPVETLSDWETLPYDSFSPHQEIISNRLSTLYRIPSLLKGILILPVNTLM 114

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +  +   + ++ G+ + +  L  +L +  Y+  +  +  G +   G  +++FP 
Sbjct: 115 QKVCPTDYLASHALIMQKGEILSRDNLRKTLDEAGYRHVEQVLEHGEYATRGALLDLFPM 174

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E   +R+  F ++I+ +  F   T + +  V+ I +     +    PT   A++  + 
Sbjct: 175 GSE-FPYRIDFFDDEIDSLRTFDVDTQRTLAEVDQINLLPAHEF----PTDANAIELFRS 229

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + + R                     +  + +        IE +          +P   L
Sbjct: 230 QWRERFDVRRDP-------------EHIYQQVSKHILPTGIEYWQSLF----FEQPLSNL 272

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
           F Y P+++L+   +      +        F  + 
Sbjct: 273 FAYFPKNTLIVTQDLQDFAEKFWQDINQRFESRR 306


>gi|194289485|ref|YP_002005392.1| transcription-repair ATP-dependent coupling factor, helicase
           [Cupriavidus taiwanensis LMG 19424]
 gi|193223320|emb|CAQ69325.1| transcription-repair ATP-dependent coupling factor, helicase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 1149

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 81/512 (15%), Positives = 165/512 (32%), Gaps = 88/512 (17%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPNK-ILAAQLYSEFKNFFPHN 220
           +    +   + G+ GS     +A          P + +  +  + A +L  E   F P  
Sbjct: 16  VKPGLRHS-VAGLRGSADALAVAAYARQHHERAPMLAVVCSHAVDAQRLAEEIPWFAPEL 74

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVS 279
            V               +P  +T      S ++ +   R +    +       ++V + +
Sbjct: 75  RVRL-------------LPDWETLPYDSFSPHQDLVSERLATLHDIQTGQCDVMLVPATT 121

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
            +Y +      +      K G+ +++  L +      Y+     +  G + V G  I+++
Sbjct: 122 ALYRLAPPAFLAAYTFFFKQGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLY 181

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P     + +R+ +FG++IE I  F P T + +  V+ +++     +              
Sbjct: 182 PMGSA-LPYRIDLFGDEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDEAARTAF---- 236

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
                         GR  E    +   +   + +        IE Y          E   
Sbjct: 237 -------------RGRWREVFEGDPTKSPIYKDIGNGVPSAGIEYYLPLFF-----EHSA 278

Query: 460 TLFEYIPEDSLLF----VDESHVTI----PQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
           T+F+++P D+ L     VDE+         Q     R D  R          LP    + 
Sbjct: 279 TVFDFLPADTQLVFAGNVDEAIRRFWADTTQRYNFMRHDRERP--------LLPPA--DL 328

Query: 512 PLRFEEWNCLRPTTIVVSATPGS---WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
            L  E++         V+A P +    + E          I P   V+   E        
Sbjct: 329 FLSEEQF--------FVAAKPMARLVLQGEAGADQPAFSAILPDVAVNRRAE-------- 372

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + + +  +L   +  R+L+   +    E L +   E  +R             +E     
Sbjct: 373 DPLVNLESLLLDKQTRVLMCADSAGRRETLLQLFAESGLR----------PHPVEDFAAF 422

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
             G     + +  L+ G  +P+  L  + +A+
Sbjct: 423 LTGDAHFSIAVAPLQSGFALPQARLAFVTEAE 454



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 76/198 (38%), Gaps = 20/198 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + I    ++
Sbjct: 758 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGV--IREAILRELKR 815

Query: 582 GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E+    L E + E  I V   H ++   E   ++RD    + ++L+
Sbjct: 816 GGQVYFLHNEVETIENKRARLAELVPEARIAVA--HGQMHERELERVMRDFVSRRDNILL 873

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +             +
Sbjct: 874 CTTIIETGIDVPTANTILIHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDVDGL 929

Query: 698 QLAIDETTRRRE--KQLE 713
                +  RR E  +Q+E
Sbjct: 930 TK---QAQRRLEAIQQME 944


>gi|71278327|ref|YP_268864.1| transcription-repair coupling factor [Colwellia psychrerythraea
           34H]
 gi|71144067|gb|AAZ24540.1| transcription-repair coupling factor [Colwellia psychrerythraea
           34H]
          Length = 1207

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 112/328 (34%), Gaps = 35/328 (10%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS  +F + +  +  Q P +++  N   A ++  E  +    ++              
Sbjct: 28  LHGSSSSFALYQAAKTAQTPILLITSNTPQALKIEQELLSLAKSDS--------QNKANI 79

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMI 294
              P  +T      S ++ I   R +    L      I++  V+ +   +   +      
Sbjct: 80  CLFPDWETLPYDNFSPHQDIISQRLATLYQLSRMESGIIIVPVTTLVQKLAPKQYIEANS 139

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K GD  +  ++  +L    Y+  D  +  G F   G  +++FP    +  +R+  F 
Sbjct: 140 LIIKQGDKRDLHQMRQALEASGYRNVDQVLEHGEFSARGAILDLFPM-GSNKPFRLDFFD 198

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+EI  F P + +    ++ I +     +      ++            R    E+  
Sbjct: 199 DEIDEIRLFDPESQRSKEKIDEINLLPAHEFPIDEAGISLF----------RSQFREQFQ 248

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP------PPTLFEYIPED 468
             +  + +  +++              IE Y                    TL +Y+ ++
Sbjct: 249 GNIHKESVYHKVS-------NGILPPGIEYYLPLFFDNKQDTEKEGATLSNTLCDYLTDN 301

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKAT 496
           +L+ +  S      ++  +    +R   
Sbjct: 302 TLVVI--SGDIEHSLTQYWLDIEYRYEN 327



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 29/162 (17%)

Query: 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
           E  + +I E ++R T          S   QV  +++             +  + K  A D
Sbjct: 855 EHDEALIREAVLRET----------SRGGQVYYLHNH------------VDTIDKTAA-D 891

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           + + + E  +     H +++  E   I+ D    +F+V+V   ++  G+D+P    + + 
Sbjct: 892 IQKLVPEARVVTA--HGQMRERELERIMSDFYHQRFNVIVCTTIIETGIDVPSANTIIMD 949

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            AD  G  +    L Q  GR  R+ +           K I  
Sbjct: 950 RADHLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHEKRITK 987


>gi|167570304|ref|ZP_02363178.1| transcription-repair coupling factor [Burkholderia oklahomensis
           C6786]
          Length = 1157

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 104/303 (34%), Gaps = 40/303 (13%)

Query: 175 GVTGSGKTFTMAK--VIEAMQRPAI-VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G  GS     +A+   +   Q P + V+  N + A +L  E   F P   V         
Sbjct: 25  GAHGSADALVIARYLAVHRAQVPLLAVICANAVDAQRLAQELGYFAPDARVRV------- 77

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESY 290
                 +P  +T      S ++ +   R +    L E     ++V + + +Y +      
Sbjct: 78  ------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFM 131

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +        G+ +++ +L + L    Y+     +  G + V G  I+++P     + +R+
Sbjct: 132 AAYTFAFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLYPM-GSPLPYRI 190

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F + ++ I  F P T + +  V  +++     +              +   + R  E 
Sbjct: 191 DLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA--------RTAFRSRWRET 242

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +                  + +        IE Y          +   TLF Y+PE++ 
Sbjct: 243 FEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----DETATLFHYLPENAQ 288

Query: 471 LFV 473
           L  
Sbjct: 289 LVF 291



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 75/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 754 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 811

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L       R +  H ++   E   ++RD    + +VL+  
Sbjct: 812 GGQVYFLHNEVETIENRQAMLEALVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +++  
Sbjct: 872 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQALTK 927

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 928 ---QAQRRLEAIQQME 940


>gi|319407247|emb|CBI80886.1| transcription repair coupling factor [Bartonella sp. 1-1C]
          Length = 1166

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 89/520 (17%), Positives = 170/520 (32%), Gaps = 98/520 (18%)

Query: 175 GVTGSGKTFTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           GV    + F +AK+   +   +P + +  +    A L        P+ +V  F       
Sbjct: 21  GVVDGFEAFALAKLSAEIAQDKPLVYVVRDGTKIAYLQQALNFIEPNLSVFQF------- 73

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-----RNDCIVVSSVSCIYGIGSV 287
                 P  D       S    I   R SA   + +     R   I+ ++ + I  +   
Sbjct: 74  ------PAWDCLPYDRVSPGIAITARRLSALAHMSDLRKNPRFSIILTTANTVIQKLPPC 127

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDV 346
                 I+ ++IG  ++   L+  L +  ++R       G F V G  I+IF PS+ E  
Sbjct: 128 AMIDDQIIHVRIGQCMDMTYLIHYLEQNGFERVATVRDIGEFAVRGGIIDIFSPSYTE-- 185

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  FG  +E I  F P T + I N   + +   S        ++             
Sbjct: 186 PFRLDFFGQTLETIRVFDPETQRTIANKTELFLQPMSEITLTPEFISRFKSN-------- 237

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY-- 464
              +   G   ++  L        E +        +E++          E   + F++  
Sbjct: 238 --YIRSFGVPKKSDML-------YEAISQGRRFSGMEHWLPLFY-----ENLNSFFDHCG 283

Query: 465 -IPEDSLLFVDES----HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP------- 512
            +P      ++E+    +  I       +   + +     Y    P+ +   P       
Sbjct: 284 NLPVVFEHLIEEALIERYRLIVDYYNSRKERENNQENDVSYHPIEPNLLYWTPEQVLTCV 343

Query: 513 ------LRFEEWNC---LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
                 + F  +N    L+ T I  +AT G               I+     D  V    
Sbjct: 344 EQCGLRIDFTPFNISRTLKQTVIHTNATQGYD------------FIKERNAPDKNV---- 387

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                  V D I      G ++LL   ++   + L + L E  ++   +   ++T++   
Sbjct: 388 ----FSSVVDHIASLRSSGKKVLLAFWSEGSMDRLLQVLDEHGLQKVEIAKSLQTVKATP 443

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             R        +L  + ++  G +I +   V I + D  G
Sbjct: 444 RDR--------ILAAVLMIEHGFEIED--FVVIAEQDILG 473



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 101/274 (36%), Gaps = 44/274 (16%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L      + E  +  T  +D    +R+  +  + +   + +     +
Sbjct: 768  HVLTLSATPIPRTLSLALSGLRELSLITTPPIDRMA-VRTFISPFDLMVIRETLLREYYR 826

Query: 582  GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +             + EYL      ++++  H ++   +  +I+     G++DVL+  
Sbjct: 827  GGQSFYVCPRISDLSYVEEYLKTHVPEIKFVIAHGQMPAGQLDDIMNAFYDGQYDVLLST 886

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  A+  G     ++L Q  GR  R+      L+     K +  
Sbjct: 887  TIIESGLDIPTANTLIVHRAEMFGL----SALYQLRGRVGRSKQRAYALFTFPSGKVLLP 942

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
            A D    RR K                  +++ +D +       ++        +L  ++
Sbjct: 943  AAD----RRLK------------------VLQSLDTLGAGFQLASHDMDIRGSGNLLGEE 980

Query: 760  GKAHLK----SLRKQMHLAADNLNFEEA-ARIRD 788
               H+K     L ++M         EEA A ++D
Sbjct: 981  QSGHIKEVGFELYQKML--------EEAVAELKD 1006


>gi|227824817|ref|ZP_03989649.1| transcription-repair coupling factor [Acidaminococcus sp. D21]
 gi|226905316|gb|EEH91234.1| transcription-repair coupling factor [Acidaminococcus sp. D21]
          Length = 1093

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 109/284 (38%), Gaps = 26/284 (9%)

Query: 162 KGIHSREKVQ---LLLGVTGSGKTFTMAKV--IEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +GI + +K      + G++GS K   +  +        P I++ P +     L  E   F
Sbjct: 17  EGIQAWQKASGPLTVTGLSGSIKAGFLCALQTFGKASDPLIILTPRREDVRLLRRELTPF 76

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV-V 275
           +P              Q    +        +  + NE++   R +A   +L++   I+ V
Sbjct: 77  YPD-------------QAMRELYPLGLIHGEIDTRNEEVMAERAAALEMILKKEAAIIFV 123

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           ++ + I  +   +   +  + L  GD   + +L+  LVK+ Y+R D     G F V GD 
Sbjct: 124 TAEAAIQKLPRPDGLLRDSITLTHGDEKNRDKLIERLVKEGYERTDQVETLGQFSVRGDI 183

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           ++IFP + +D   R+  F   I+ I  F     + I  +  + I   +     +   ++ 
Sbjct: 184 LDIFPINAKD-PVRIEWFDETIDAIRRFSLEDQRSIGGLTKVDIMPIA--SGEKEAESSL 240

Query: 396 MKYIKEE----LKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
           + Y+  +    L       E+  +     R  +   +  + L  
Sbjct: 241 LDYVSPDQLLVLDEASAFFEEAKKSYLDNREFKDQLFSEKELLE 284



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L        +  +I        PVE   A      V + I    ++G 
Sbjct: 703 VLTLSATPIPRTLHLALVKGRDMSVIESPPEDRLPVETYVAEYDDGMVKEAIEREIRRGG 762

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           RI          + +   L E    + +   H  +   E  E++     G +DVL+   +
Sbjct: 763 RIYYVHNRIEALDRIAHRLREMIPGLSIGVAHGRMTEDELEEVMVGFYQGDYDVLLSTTI 822

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+P    + I  A+  G  +    L Q  GR  R+       +     K    A+
Sbjct: 823 IENGLDVPLANTIIIDGAENFGLSQ----LYQMRGRVGRSSRLAYAYFLYKKDK----AL 874

Query: 702 DETTRRR 708
            E +++R
Sbjct: 875 SEVSQKR 881


>gi|197265670|ref|ZP_03165744.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197243925|gb|EDY26545.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 1148

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 120/309 (38%), Gaps = 38/309 (12%)

Query: 165 HSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            + ++ QL  G +TG+     +A++ E    P +++AP+   A +L+ E + F   + + 
Sbjct: 12  KAGDQRQL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT--DQMV 67

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
             ++ ++    +++ P  +    + S++ +     R             ++V   + +  
Sbjct: 68  MNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQR-----------GVLIVPVNTLMQR 116

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +          + +K G  + +  L + L    Y+  D  +  G +      +++FP   
Sbjct: 117 VCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRSALLDLFPMGS 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+  F ++I+ +  F   T + +  VE I +     +    PT   A++  + + 
Sbjct: 177 E-QPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF----PTDKAAIELFRSQW 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           +             E +R  + I    + +        IE +          EP P LF 
Sbjct: 232 RDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFS 274

Query: 464 YIPEDSLLF 472
           Y P ++L+ 
Sbjct: 275 YFPANTLVV 283



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 866

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 867 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|103487138|ref|YP_616699.1| transcription-repair coupling factor [Sphingopyxis alaskensis
           RB2256]
 gi|98977215|gb|ABF53366.1| transcription-repair coupling factor [Sphingopyxis alaskensis
           RB2256]
          Length = 1194

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 143/443 (32%), Gaps = 65/443 (14%)

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
              +A +  A  +  + +A +      +      F P   V  F             P  
Sbjct: 30  PLLLADLARASDKRLVYVATDDAAMQAIADAAPFFAPDLTVHRF-------------PAW 76

Query: 242 DTYIEKESSINEQIDRMRHSATRSL--LERNDCIVVSSVSCI-YGIGSVESYSQMIVQLK 298
           D      +  + ++   R +   +L    R   +++++V+ I     +     Q+   L 
Sbjct: 77  DCLPYDRAGPSMRVSADRLATLSALQAAPRRGELILTTVAAITQRTLTPFRIRQLATTLA 136

Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358
            G  +++  L   LV   + R D    +G F V G  +++FP+  E+   RV  FG++IE
Sbjct: 137 AGQRIDRDALAELLVANGFSRVDTVADQGEFAVRGGLLDLFPA-GEETGLRVDFFGDEIE 195

Query: 359 EISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE 418
            I  F P   + +   + +++   S  +    T+             R    E  G    
Sbjct: 196 SIRRFDPADQRSLGAAKALQLLPASETLLDEATIKRF----------RSAYRELFGAQAT 245

Query: 419 AQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHV 478
              L Q ++              ++++      R       TLF++I  D    V   H 
Sbjct: 246 GDPLYQAVS-------DGRRQAGMDHWLPLFEERM-----ATLFDHI--DPATPVLRGHR 291

Query: 479 TIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW--- 535
           T       +       A         P     RPL         P  + +  T   W   
Sbjct: 292 TDATAETRFAAIADYHANRVAAERESPGSY--RPL--------APEALYL--TEAEWSGA 339

Query: 536 ELEQCQGIIVEQIIRPTGLV---------DPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
           E ++   I+    + P   V         D   E  +     + V D ++   ++G R +
Sbjct: 340 EQDRPVHIVTAFDVPPAATVVDLETFAARDFTPERTADLNVYDKVADHLSDERRKGRRTI 399

Query: 587 LTVLTKRMAEDLTEYLYERNIRV 609
           +   +    E L+  L +  +  
Sbjct: 400 IASYSGGARERLSGLLRDHGVTS 422



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 74/191 (38%), Gaps = 13/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + ++ATP    L+     + E  +  T  VD    +R+     + V   + +     +
Sbjct: 794 HVLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLA-VRTYVAPWDPVVIREALLREHDR 852

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +        +   D+ EYL  R   ++Y+  H ++   E  E +      K+DVLV  
Sbjct: 853 GGQSFFVTPRIKDLPDIEEYLRTRVPEIKYVVAHGQMGAQEVEERMSAFYDRKYDVLVST 912

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD+ G  +    L Q  GR  R+                  
Sbjct: 913 TIVESGLDIPSANTLIVHRADRFGLAQ----LYQLRGRVGRSKTRAYAYLTTPDGG---- 964

Query: 700 AIDETTRRREK 710
           AI +T  +R K
Sbjct: 965 AITDTAEKRLK 975


>gi|258645650|ref|ZP_05733119.1| transcription-repair coupling factor [Dialister invisus DSM 15470]
 gi|260403014|gb|EEW96561.1| transcription-repair coupling factor [Dialister invisus DSM 15470]
          Length = 1135

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 145/439 (33%), Gaps = 76/439 (17%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           ++ + S     ++ G   S K    A +      P I++ P++    +   + + F    
Sbjct: 52  VEKLFSLADPIMISGAGDSQKALLTA-MAAKEDSPLIIIVPSQKDVFRWEMDLRFFATDL 110

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-S 279
            + YF             P  +    K +    +  R R     SLL+     V+++V  
Sbjct: 111 HLYYF-------------PLVEETGFKVTFSGTERLRDRMRGLASLLDGRRSAVIATVVE 157

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
               I S     + ++ + +G+ +E++ L+  LVK  Y+R D     G F V GD ++IF
Sbjct: 158 AAQKIISPSGILENLMTIHMGEVIEREILVGKLVKLGYERVDQVERCGHFSVRGDIVDIF 217

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA------------------ 381
            +  E   +RV  F ++++ I  F   T + I   + I I                    
Sbjct: 218 -AINESHPFRVEFFDDEVDGIRVFNEDTQRSIDIRDDISILPAVIRGECSSSILSYLNSG 276

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG---------RLLEAQRLEQRITYDLEM 432
              Y  P+       KY  EE + +    +  G         +    + L   +  D ++
Sbjct: 277 RIFYDEPQRCEEELKKYFHEEAENKEKAFDWAGLVKTGRSGRKYRNREILFSFLKRDADL 336

Query: 433 LE----TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
            +     T   +++ NY R ++          L   + E     +     +  +    Y 
Sbjct: 337 FKVKETATWKGRTMVNYQRQISLFFND-----LTRLLKEGWSAVILTPRRSERKELEQYL 391

Query: 489 GDFH-------------RKATLAEYGFRLPSCMDNRPLRFEEWNCLR----------PTT 525
            D+H                 +   GF LP          + +   +             
Sbjct: 392 SDYHVPVSQKVQKGKVTLYNGVLSGGFELPDAKMAFITAGDIFGKQKARRYKAGGKGKQI 451

Query: 526 IVVS-ATPGSWELEQCQGI 543
              S   PG + +++  GI
Sbjct: 452 RYFSDLEPGDYVVQRVHGI 470



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 67/183 (36%), Gaps = 10/183 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + +SATP    L       V  ++  T        I++  T+ +D    D I     +G
Sbjct: 731 ILTLSATPIPRTLHMS-LTGVRDMVAMTQPPANRHAIQTYVTEYDDTIVKDAILHEKARG 789

Query: 583 LRILLTVLTKRMAEDLTEYLYE---RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +             +  +L +    ++ +   + ++      +I+ D    K+DVL+  
Sbjct: 790 GQTYFIYNRIESIRAMEAHLRDILPSDVTIAVAYGQMDGRTLEKIMVDFFEKKYDVLLCT 849

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D P    + + DADK G  +      Q  GR  R+       +     K +  
Sbjct: 850 TIIENGVDQPNANTMLVYDADKLGLSQIY----QMRGRVGRSEKIARAWFFYRQGKVLSE 905

Query: 700 AID 702
           A +
Sbjct: 906 AAE 908


>gi|153010961|ref|YP_001372175.1| transcription-repair coupling factor [Ochrobactrum anthropi ATCC
           49188]
 gi|151562849|gb|ABS16346.1| transcription-repair coupling factor [Ochrobactrum anthropi ATCC
           49188]
          Length = 1170

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 78/540 (14%), Positives = 178/540 (32%), Gaps = 86/540 (15%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
            +  ++ GV    + F + ++ E +    P + +  +    A L            V  F
Sbjct: 18  NRHIVIDGVADGYEAFCLIRLAEEIGERGPIMYIVRDGQRIADL----------EQVLSF 67

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-----RNDCIVVSSVSC 280
           V+      P  ++P  D       S        R +A  +L E         I+ ++ + 
Sbjct: 68  VAPDM---PVLHLPAWDCLPYDRVSPGADASARRLAALSALSELKKTPHPAIILTTANAV 124

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           +  +    + ++ ++  + G+ ++  +L S L +  ++R       G F V G  ++++ 
Sbjct: 125 LQKLPPQAAIAEQVISARPGNQLDMNDLASRLERNGFERVSTVRDIGEFAVRGGILDLYA 184

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
              E+   R+  FG+ +E I  F P + +     +   +   S        ++       
Sbjct: 185 PGAEE-PLRLDFFGDTLESIRAFDPASQRTTGTRKEFVLQPMSEITLSPDMISRF----- 238

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
                R   +   G         QR     + +        +E++          +   T
Sbjct: 239 -----RKNYVAMFGAP-------QRDDALYQAISEGRRFAGMEHWLPLFY-----DKLDT 281

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           +F++   +  +  D  H+    ++  +        +            D  P +      
Sbjct: 282 VFDH-AGNMPVVFD--HLVHEALTERHTMVVDHYESRLRQAEGKEPGSDAVPYKP----- 333

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--PVEI-------RSAR------ 565
           ++P  + +  TP   E +  +   +   + P G  +    + +       RS        
Sbjct: 334 VKPEALYL--TPSEVE-KHAEAGGMRIDLTPFGAPEVTGRIIVHADVHKGRSFAEERAAT 390

Query: 566 --TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                E V   I      G ++L+   T+   + L + L E  +       ++++++R+ 
Sbjct: 391 DVNLFEAVVKHIAELRASGKKVLVAAWTEGSLDRLLQVLDEHGLE------KIESVDRLS 444

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            ++ L   K    V   +L          LV + + D  G       LI+   R  R+ +
Sbjct: 445 TVKALSRDK----VTAAVLAVESGFDAGDLVIVAEQDILG-----DRLIRRSKRRKRDQD 495



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 93/260 (35%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 775  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPLVIRETLLRERYR 833

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +            ++ E+L      ++V   H ++      +I+     G++DVL+  
Sbjct: 834  GGQSFYVCPRISDLGEIEEFLKTHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 893

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 894  TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 946

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 947  -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 987

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 988  QSGHIKEVGFELYQQMLEEA 1007


>gi|15602906|ref|NP_245978.1| hypothetical protein PM1041 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721375|gb|AAK03125.1| Mfd [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 1145

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/315 (15%), Positives = 115/315 (36%), Gaps = 39/315 (12%)

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242
             ++++ +      +V+  +   A +L            +  F S      P  + P  +
Sbjct: 30  LAISQIAQQYSGLTVVVTADTRSAVRL---------EKVLAQFSSL-----PVTFFPDWE 75

Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMIVQLKIGD 301
           T      S ++ I   R SA   L      IV+  +S +   +         ++ +K  D
Sbjct: 76  TLPYDAFSPHQDIISSRLSALSQLQHCQKGIVILPISTLMQRLCPPTFLHHNLLLVKKSD 135

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
            ++  +L   L    Y+  +  +  G + V G  +++FP     V +R+  F ++I+ I 
Sbjct: 136 RLQINKLRLQLESAGYRAVEQVLEHGEYAVRGALLDLFPMGSA-VPFRLDFFDDEIDSIR 194

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
            F   T + +  ++ I +     +    PT   ++++ + + +    E+ ++   +  Q 
Sbjct: 195 TFDVDTQRTLEEIQAINLLPAHEF----PTDEKSIEFFRTQFRETFGEIRRDPEHIYQQ- 249

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
                      +        IE +          E   +LF+Y+P+++L    +      
Sbjct: 250 -----------VSKGTLISGIEYWQPLFF-----EQMASLFDYLPKNTLWL--DVGDIQE 291

Query: 482 QISGMYRGDFHRKAT 496
           Q +  Y+    R  +
Sbjct: 292 QGTRFYQDAEQRYES 306



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 7/178 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    II         ++    ++    + + I     +G 
Sbjct: 752 ILTLTATPIPRTLNMAMHGIRDLSIISTPPARRLTIKTFVKQSDESVIREAILREILRGG 811

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E+  E L       R    H +++  E   ++ D    +F+VLV   +
Sbjct: 812 QVYYLHNDVASIENCAEKLRTLVPEARVTIGHGQMRERELERVMSDFYHQRFNVLVCSTI 871

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K++  
Sbjct: 872 IETGIDVPTANTIIIERADNFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPIKAMTK 925


>gi|148827037|ref|YP_001291790.1| transcription-repair coupling factor [Haemophilus influenzae
           PittGG]
 gi|148718279|gb|ABQ99406.1| transcription-repair coupling factor [Haemophilus influenzae
           PittGG]
          Length = 1146

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 120/335 (35%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V        ++++ E  Q   +V+  +   A +L          N  
Sbjct: 10  IPTQPNDHKILGNVLPGADALAISEIAEQNQNLTVVVTTDTRSAVRLSRVLSELSSQNVC 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-ERNDCIVVSSVSCI 281
            +              P  +T      S +++I   R SA   L   +    ++   + +
Sbjct: 70  LF--------------PDWETLPYDTFSPHQEIISSRLSALFHLQNAKKSIFLLPISTLM 115

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +     ++ +K GD +   ++   L    Y+  +  +  G + V G  +++FP 
Sbjct: 116 QRLCPPQYLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               V +R+  F ++I+ I  F   T + +  + +I +     +    PT +  +++ + 
Sbjct: 176 GSA-VPFRLDFFDDEIDSIRTFDVDTQRTLDEISSINLLPAHEF----PTDDKGVEFFRA 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +    E+ ++   +  Q            +        IE +              TL
Sbjct: 231 QFRETFGEIRRDPEHIYQQ------------ISKGTLISGIEYWQPLFFAEM-----ATL 273

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+Y+PE +L    E++ T  Q    Y+    R   
Sbjct: 274 FDYLPEQTLFVDMENNQT--QGERFYQDAKQRYEQ 306



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 12/187 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +D+   + I     +G
Sbjct: 753 ILTLTATPIPRTLNMAMNGIRDLSIIST-PPARRLSIKTFVRQNDDLVVREAILREILRG 811

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H +++  E   ++ D    +++VLV   
Sbjct: 812 GQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCST 871

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K +   
Sbjct: 872 IIETGIDVPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKMMTK- 926

Query: 701 IDETTRR 707
             +  RR
Sbjct: 927 --DAERR 931


>gi|329120140|ref|ZP_08248810.1| transcription-repair coupling factor [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327463671|gb|EGF09989.1| transcription-repair coupling factor [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 1290

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 112/325 (34%), Gaps = 37/325 (11%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
            GS   F    +      P +++ P+   A +L + ++ F P +    F+  ++    E 
Sbjct: 20  AGSLPYFLTQNLPAKP--PKLILTPDAETALRLQTAWQFFRPEDN-ALFLPDWETLPYER 76

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           + P  D   E+ S + +  + + H+           + V   + +  +            
Sbjct: 77  FSPHQDLVSERLSVLWQLKNGLAHA-----------LFVPVSTAMQRLAPAPFLLGRTFW 125

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK G  ++   L  +LV+  Y      +  G F V G  +++FP    D  +R+ +F ++
Sbjct: 126 LKTGQRLDIAALRQNLVEAGYSAVSNVVAGGEFAVRGGIVDLFP-TGSDTPYRIDLFDDE 184

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           I+ I  F P + + I  V  I++     + T            +EE+             
Sbjct: 185 IDSIKTFDPDSQRTIAPVSEIRLLPAHEFPTDDAAQKIFRSRFREEV------------- 231

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL-LFVDE 475
                         + +        +E Y         G    TLF+Y+  D+L + V +
Sbjct: 232 ----NGNPNDAAVYKAVSGGQFGAGVEYYLPLF--FEDGC--ATLFDYLGADALAVCVGD 283

Query: 476 SHVTIPQISGMYRGDFHRKATLAEY 500
            H    +     +  F      A Y
Sbjct: 284 VHTEARRFEAEVKSRFQMAQGDATY 308



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 897  ILTLTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 953

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 954  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 1011

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 1012 LCSTIIETGIDIPNANTIIINRADKFGIAQ----LHQLRGRVGRSHHQAYAYL------- 1060

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1061 -----------------------LTPEYISKDAEKRLDAIAAADELGAGFSLAMQDLEIR 1097

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1098 GAGEILGEGQSGEMVQVGFTLYTEMLKQAVRDL 1130


>gi|124266762|ref|YP_001020766.1| transcription-repair coupling factor [Methylibium petroleiphilum
           PM1]
 gi|124259537|gb|ABM94531.1| transcription-repair coupling factor [Methylibium petroleiphilum
           PM1]
          Length = 1184

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 74/484 (15%), Positives = 148/484 (30%), Gaps = 77/484 (15%)

Query: 178 GSGKTFTMAKVIEAMQRP---AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           GS     +A+  E          V++       +L  E   F P   V  F  + +    
Sbjct: 46  GSADALLLARFAEQRAAQGQITAVISAEPADTQRLQDELAFFAPGLRVAVFPDW-ETLPY 104

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           +++ P  D   E+ +++  +I   R           D +++ + + +  +      +   
Sbjct: 105 DSFSPHQDLISERLATL-WRILHARSEGA------IDVVLMPATTALLRLAPPSFLAAYT 157

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
                   +++  L + L    Y+     +  G + V G  I++FP     V +RV +F 
Sbjct: 158 FHFVQKQKLDEAALKAQLTLAGYQHVSQVVSPGEYAVRGGLIDLFPM-GSPVPYRVDLFD 216

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           N+++ I  F P + + +  V  +++     +                    R    EK  
Sbjct: 217 NEVDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDEAARTGF----------RARWREKME 266

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                 RL        + + T  +   IE Y          +   T+F+Y+   + L + 
Sbjct: 267 GDPSRSRL-------YKDMGTGLAGPGIEFYLPLFF-----DETATVFDYLGAAAELVL- 313

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV------ 528
             H  +      + G+   +    ++    P               L P  I +      
Sbjct: 314 --HGEVDAALNKFWGETRERHRFLQHDPERP--------------ILPPQEIYLPPDAFF 357

Query: 529 --SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI--NLAAQQGLR 584
                     L         + +RP  L D  VE R     +  +   +        G R
Sbjct: 358 ARCNDHAQLSLRGSD---PLEWVRP--LPDLAVE-RGTPDPLRKLEQHLAKQGTDSTGPR 411

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL   ++   E L E L +  +              +  + D   G     + +  L  
Sbjct: 412 VLLVAESEGRRESLLELLRDHQLE----------PPTVASLADFEAGDHRYAITVAPLAS 461

Query: 645 GLDI 648
           G   
Sbjct: 462 GFFW 465



 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 65/180 (36%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-DVYDEINLAAQQGL 583
            + ++ATP    L      + +  +  T            R +    + + +    ++G 
Sbjct: 785 VLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRGESNGTIREAVMRELKRGG 844

Query: 584 RILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++          E+    L E L E  I V   H ++   E   ++R+    K ++L+  
Sbjct: 845 QVYFLHNEVETIENRRRTLEELLPEARIAVA--HGQMPERELERVMREFVAQKHNLLLCS 902

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           + +  
Sbjct: 903 TIIETGIDVPTANTIVMSRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVPDVEGLTK 958


>gi|282890191|ref|ZP_06298721.1| hypothetical protein pah_c014o047 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499848|gb|EFB42137.1| hypothetical protein pah_c014o047 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 1103

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 94/237 (39%), Gaps = 18/237 (7%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +L +     +   L+  +  + K    +  ++   +  +++       ++LY +F     
Sbjct: 13  ELQEAFKQGD-PVLIEELWNAPKALIASLALQVTGKHVLILTGGSQEESRLYHDF----- 66

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR--SLLERNDCIVVS 276
                     +    P    P  +T   +  + +      R+ A R  S   +   I+  
Sbjct: 67  ---------PFFSSAPLLEFPAWETLPSENIAPSPDTVGARYKALRQVSATFQPHIIISG 117

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
             +C+  +   +++  + + LK G++     L+  L +  Y+R  +   +G F + G  I
Sbjct: 118 LQACLQSLIPPQNFDSLYLALKKGETFPFDTLIQRLNEMGYRRSAVAADKGEFAIRGGII 177

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
           +IFP    D  +R+  +G+DIE I  F P+  + I+ VE I+I         + +  
Sbjct: 178 DIFPVASPD-PFRIEFWGDDIESIRIFDPIGQRSIKTVEHIEITPAQEMELIQQSSK 233



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           RV   H ++   E   +    + G  D+LV   ++  G+DIP    + I  AD+ G    
Sbjct: 816 RVVVGHGQMSADEIDSVFHAFKSGAADILVATTIIESGIDIPNANTILINRADQFGL--- 872

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSI 697
              L Q  GR  R        +     KS+
Sbjct: 873 -ADLYQLRGRVGRWNRRAYAYFLVPNLKSL 901



 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 15/152 (9%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T+E +++ +    + L +L    +  LK G I+ P  S  + +  +D         Y 
Sbjct: 529 KKTKERTQEAIVGYAKDLLQLYAHRS--LKAGLIY-PSDSIDMQDFEEDF-------PYE 578

Query: 149 PSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ  AIA + + + S +   +L+ G  G GKT   M    +A+    +   ++ P  
Sbjct: 579 ETEDQLNAIASIKEDMQSTKSMDRLICGDVGYGKTEVAMRAAFKAVMDGHKQVALLVPTT 638

Query: 204 ILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +LA Q Y  F     +  V   V        E
Sbjct: 639 VLAMQHYENFIERMSNFPVRIGVLSRFRTPKE 670


>gi|254247951|ref|ZP_04941272.1| Transcription-repair coupling factor [Burkholderia cenocepacia
           PC184]
 gi|124872727|gb|EAY64443.1| Transcription-repair coupling factor [Burkholderia cenocepacia
           PC184]
          Length = 1164

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/457 (14%), Positives = 149/457 (32%), Gaps = 69/457 (15%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFF 217
           +  +   ++     G  GS     +A+ +   ++      V+  N + A +L  E + F 
Sbjct: 21  VARVKPGQRFAFD-GAHGSADALAIARYLADNRQDVPLLAVICANAVDAQRLSQEIRYFS 79

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVS 276
           P   V               +P  +T      S ++ +   R +    L E     ++V 
Sbjct: 80  PDARVRL-------------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVP 126

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + + +Y +      +        G+ +++ +L + L    Y+     +  G + V G  I
Sbjct: 127 ATTALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLI 186

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +++P     + +R+ +F + ++ I  F P T + +  V  +++     +           
Sbjct: 187 DLYPM-GSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA----- 240

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
              +   + R  E  +                  + +        IE Y          +
Sbjct: 241 ---RTAFRSRWRETFEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----D 283

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TLF Y+P+D+ L        +      +  D  ++     +    P           
Sbjct: 284 ETATLFHYLPQDAHLVFTGD---LEASIRRFTADTKQRHAFLAHDRERP----------- 329

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQVEDVY 572
               L P  + +S      E          +++ P     G      E+ +     +D  
Sbjct: 330 ---ILEPQRLFLS-----DEDFFAFAKPFARVVLPAQPAGGWATALPEL-TVDRHADDPL 380

Query: 573 DEINLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIR 608
             +    +  G R+LLTV +    E + + L E ++R
Sbjct: 381 ASLRTFVESSGKRVLLTVESAGRRETILQLLAEHHLR 417



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 75/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 763 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 820

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L       R +  H ++   E   ++RD    + +VL+  
Sbjct: 821 GGQVYFLHNEVETIENRKAMLEALVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 880

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +S+  
Sbjct: 881 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQSLTK 936

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 937 ---QAQRRLEAIQQME 949


>gi|170733304|ref|YP_001765251.1| transcription-repair coupling factor [Burkholderia cenocepacia
           MC0-3]
 gi|169816546|gb|ACA91129.1| transcription-repair coupling factor [Burkholderia cenocepacia
           MC0-3]
          Length = 1156

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 70/461 (15%), Positives = 150/461 (32%), Gaps = 77/461 (16%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFF 217
           +  +   ++     G  GS     +A+ +   ++      V+  N + A +L  E + F 
Sbjct: 13  VARVKPGQRFAFD-GAHGSADALAIARYLADNRQDVPLLAVICANAVDAQRLSQEIRYFS 71

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVS 276
           P   V               +P  +T      S ++ +   R +    L E     ++V 
Sbjct: 72  PEARVRL-------------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVP 118

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + + +Y +      +        G+ +++ +L + L    Y+     +  G + V G  I
Sbjct: 119 ATTALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLI 178

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +++P     + +R+ +F + ++ I  F P T + +  V  +++     +           
Sbjct: 179 DLYPM-GSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA----- 232

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
              +   + R  E  +                  + +        IE Y          +
Sbjct: 233 ---RTAFRSRWRETFEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----D 275

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TLF Y+P+D+ L        +      +  D  ++     +    P           
Sbjct: 276 ETATLFHYLPQDAHLVFTGD---LEASIRRFTADTKQRHAFLAHDRERP----------- 321

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP--------TGLVDPPVEIRSARTQV 568
               L P  + +S      E          +++ P        TGL +  V         
Sbjct: 322 ---ILEPQRLFLS-----DEDFFAFAKPFARVVLPAQPAGGWATGLPELTV-----DRHA 368

Query: 569 EDVYDEINLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +D    +    +  G R+LLTV +    E + + L E ++R
Sbjct: 369 DDPLASLRTFVESSGKRVLLTVESAGRRETILQLLAEHHLR 409



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 75/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 755 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 812

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L       R +  H ++   E   ++RD    + +VL+  
Sbjct: 813 GGQVYFLHNEVETIENRKAMLEALVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +S+  
Sbjct: 873 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQSLTK 928

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 929 ---QAQRRLEAIQQME 941


>gi|86140950|ref|ZP_01059509.1| transcription-repair coupling factor [Leeuwenhoekiella blandensis
           MED217]
 gi|85832892|gb|EAQ51341.1| transcription-repair coupling factor [Leeuwenhoekiella blandensis
           MED217]
          Length = 1127

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + +L   I   +    L G+ GS  +  +A+  +   +P +V+  +K  A  + ++ +  
Sbjct: 16  LQELGNAIAVSQNRINLDGLIGSSLSIAIAESFKTADKPFLVILNDKEEATYILNDLEQL 75

Query: 217 FPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
              + V ++  SY   YQ           IE   + N  +     +   S  ++   I+ 
Sbjct: 76  VKEDHVLFYPGSYRRPYQ-----------IEGTDNANILLRAEVLNRINS-RKKPALIIT 123

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
              +    + + +   +  +++KI D++    +   L + ++KR D     G F V G  
Sbjct: 124 YPDALFEKVVTRKELDKSTLKVKINDNLSLDFVNEMLFEYKFKRVDFVTEPGEFSVRGGI 183

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I++F S   D  +R+  FG++++ I  F   T   +  +  I +  N      + T  + 
Sbjct: 184 IDVF-SFSHDQPYRIEFFGDEVDSIRTFDVETQLSVDKINKISLMPNVENKALQETRESF 242

Query: 396 MKYIKEE 402
           +KYI  +
Sbjct: 243 LKYIAAD 249



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 7/176 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +   I        P+E    R   E + D I+   Q+G 
Sbjct: 709 TLTLTATPIPRTLQFSLMAARDLSTITTPPPNRYPIETHIIRLSEETIRDAISYEIQRGG 768

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  +++   +       +    H ++   +  E++     G FDVLV   +
Sbjct: 769 QVFFIHNRLQNIKEVAGMIQRLVPDAKVAIGHGQMDGKKLEELMLQFMDGAFDVLVSTTI 828

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  GLD+P    + I +A+  G     + L Q  GR  R+       +      ++
Sbjct: 829 IESGLDVPNANTIFINNANNFGL----SDLHQMRGRVGRSNKKAFCYFITPPLSAM 880


>gi|319934923|ref|ZP_08009368.1| transcription-repair coupling factor [Coprobacillus sp. 29_1]
 gi|319810300|gb|EFW06662.1| transcription-repair coupling factor [Coprobacillus sp. 29_1]
          Length = 1141

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 59/329 (17%), Positives = 120/329 (36%), Gaps = 33/329 (10%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            +   +   ++     S +   +A    + +RP +++  +   A  LY E       N V
Sbjct: 16  ALMKGKGEIVVS--HASDEAILIASAFFSSERPMLIVKESLYQAQLLYQELYPILK-NKV 72

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCI 281
            +F             P  ++   +  + +++I   R +A  +L +  D +V+    S I
Sbjct: 73  AFF-------------PCDESLRIEALASSQEIMGERINALAALCKSQDMVVICHTHSVI 119

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             I + + + +  + LK G  +E  EL   LV   Y+          +   G  I+++  
Sbjct: 120 RHIPNRDLFMENTLSLKTGMVIEPIELRQRLVHSGYQMIQRVDEPFYYSKRGGVIDVYSI 179

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             ++   R+  F ++IE +  F   T + +  V+ + I   +  +     +  A+K I  
Sbjct: 180 QYDN-PIRIEFFDDEIESLRFFDKNTQRSLEKVQEVTILPATDLLYREEEIPEAIKVI-- 236

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
                L +  +     E    E  I  D+E L+       +  Y    +         TL
Sbjct: 237 ---ETLKDKTECEEYKENLEEEISI--DIEALKGHDYSTRLYQYLSLFSS------TTTL 285

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGD 490
             Y   D +L +  S+  I  +   Y  +
Sbjct: 286 SSYF--DHVLLMTSSYEKITNVYKQYVEE 312



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 70/189 (37%), Gaps = 12/189 (6%)

Query: 525 TIVVSATPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
            + ++ATP    L+        + QI  P  L   PV+        + +   I     + 
Sbjct: 750 VLTLTATPIPRTLQMSLMGIRGLSQIETPP-LNRLPVQTYVMEKSEQLIKQVIERELGRK 808

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E +  ++       +    H ++   +  ++++     ++DVLV   
Sbjct: 809 GQVFYLYNKTSNIESVANHIARMVPEAKVGIGHGKMNKEQLEDVMQAFVDKEYDVLVCTT 868

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+DIP    + I DAD+ G  +    L Q  GR  R+             K +   
Sbjct: 869 IIETGIDIPNANTIIIEDADRFGLSQ----LYQIKGRVGRSERVAYAYLLYAKNKQMN-- 922

Query: 701 IDETTRRRE 709
            +E ++R +
Sbjct: 923 -EEASKRLK 930


>gi|304413564|ref|ZP_07395037.1| Transcription-repair coupling factor (superfamily II helicase)
           [Candidatus Regiella insecticola LSR1]
 gi|304284407|gb|EFL92800.1| Transcription-repair coupling factor (superfamily II helicase)
           [Candidatus Regiella insecticola LSR1]
          Length = 1165

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 106/298 (35%), Gaps = 37/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS      A++IE      I++  +   A +L  E                    QP 
Sbjct: 43  LVGSAYAIECAEIIERHPGLVILITTDMQSALRLRDEI--------------PQFTKQPI 88

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMI 294
           A +   +T      S ++ I   R S+   L   N   ++  ++ +        +     
Sbjct: 89  AILADWETLPYDSFSPHQDIISARLSSLYQLPIMNSGALILPINTLMQRVCPYQFLQAHA 148

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K G  + + +L + L +  Y+  D  I  G F   G  ++++P    +  +R+  F 
Sbjct: 149 LVMKTGQQLSRDKLRAQLEQAGYRSVDQVIEHGEFASRGALLDLYPMGSNE-PYRIDFFD 207

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ +  F   T + +  V+ I +     +         A++  + + +          
Sbjct: 208 DEIDSLRLFDVDTQRTLAEVKQINLLPAHEFPID----QNAIELFRSQWR---------- 253

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
              E   + +   +  + +        IE +          +P PTLF Y P ++LL 
Sbjct: 254 ---EHFEIRREAEHLYQQVSKGIWPAGIEYWQPLFFS----QPLPTLFSYFPNNTLLI 304



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 68/179 (37%), Gaps = 15/179 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     +  + + I     +
Sbjct: 772 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDELL--LREAILREILR 829

Query: 582 GLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E     L E + E +I +   H +++  +   ++ D    +F++LV
Sbjct: 830 GGQVFYLYNDVEKIEGVATKLAELVPEAHIAIG--HGQMRERDLERVMNDFHHQRFNILV 887

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
              ++  G+D+P    + I  AD+ G  +    L Q  GR  R+ +           KS
Sbjct: 888 CTTIIETGIDVPNANTIIIERADRLGLAQ----LHQLRGRVGRSHHQAYAYLLTPNIKS 942


>gi|206560380|ref|YP_002231144.1| transcription-repair coupling factor [Burkholderia cenocepacia
           J2315]
 gi|198036421|emb|CAR52317.1| transcription-repair coupling factor [Burkholderia cenocepacia
           J2315]
          Length = 1164

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/457 (14%), Positives = 149/457 (32%), Gaps = 69/457 (15%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFF 217
           +  +   ++     G  GS     +A+ +   ++      V+  N + A +L  E + F 
Sbjct: 21  VARVKPGQRFAFD-GAHGSADALAIARYLADNRQDVPLLAVICANAVDAQRLSQEIRYFS 79

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVS 276
           P   V               +P  +T      S ++ +   R +    L E     ++V 
Sbjct: 80  PDARVRL-------------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVP 126

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + + +Y +      +        G+ +++ +L + L    Y+     +  G + V G  I
Sbjct: 127 ATTALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLI 186

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +++P     + +R+ +F + ++ I  F P T + +  V  +++     +           
Sbjct: 187 DLYPM-GSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA----- 240

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
              +   + R  E  +                  + +        IE Y          +
Sbjct: 241 ---RTAFRSRWRETFEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----D 283

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TLF Y+P+D+ L        +      +  D  ++     +    P           
Sbjct: 284 ETATLFHYLPQDAHLVFTGD---LEASIRRFTADTKQRHAFLAHDRERP----------- 329

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQVEDVY 572
               L P  + +S      E          +++ P     G      E+ +     +D  
Sbjct: 330 ---ILEPQRLFLS-----DEDFFAFAKPFARVVLPAQPAGGWATALPEL-TVDRHADDPL 380

Query: 573 DEINLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIR 608
             +    +  G R+LLTV +    E + + L E ++R
Sbjct: 381 ASLRTFVESSGKRVLLTVESAGRRETILQLLAEHHLR 417



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 75/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 763 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 820

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L       R +  H ++   E   ++RD    + +VL+  
Sbjct: 821 GGQVYFLHNEVETIENRKAMLEALVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 880

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +S+  
Sbjct: 881 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQSLTK 936

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 937 ---QAQRRLEAIQQME 949


>gi|302383042|ref|YP_003818865.1| transcription-repair coupling factor [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193670|gb|ADL01242.1| transcription-repair coupling factor [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 1150

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 81/516 (15%), Positives = 151/516 (29%), Gaps = 65/516 (12%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
            R     L G         +A+ +++     + +  +   A      F+ F     V  F
Sbjct: 7   ERRTDHELGGAPEGLDALVVAERLKSSGGIGVFVGRDYARANAFVQAFQFFAADIDVLEF 66

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-----ERNDCIVVSSVSC 280
                        P  D       S    +   R +A  +L      ER   ++V++V+ 
Sbjct: 67  -------------PAWDCLPYDRLSPTSGVSAERMAALTALARRDPDERKPLLLVTTVAA 113

Query: 281 IYGIGSVESYSQMI-VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
                   + +        +G  ++   L +      Y R      RG + V G  I++F
Sbjct: 114 AMQRTPPRAVTTSAGFDAVVGLELDTAALETYFTTNGYMRASTVNERGEYAVRGGVIDVF 173

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P   E+   R+ MFG+++E I  F P T +       + +   S  +    T++      
Sbjct: 174 PPGFEE-PVRLDMFGSELESIRTFDPATQRSTGQRRAVALSPVSEALLNAETISRFRTG- 231

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
                  L      G                  +      Q +E++   L          
Sbjct: 232 ------YLNLFGAAGD-----------DPLYAAVSEGARRQGMEHWLPLLYPHLE----- 269

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519
           TLF+Y+P+ + +F+D               D +     A           NR L  E+  
Sbjct: 270 TLFDYLPDRAAIFLDHQGEAARAERWALTRDAYEARREASKA---KGGAANRALAPEQL- 325

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEINLA 578
              P     SA  G             +            E  + +    E V       
Sbjct: 326 -YLPDADWNSALAGRQVRRLSPFDAAAEDAGGRLGRTFAAERAQDSVNLFEAVAAHAAQL 384

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNI-RVRYMHS--EVKTLERIEIIRDLRLGKFDV 635
             +G R+L    ++  ++ L   L +  +  V  +    +V+   +   +R +       
Sbjct: 385 RAEGKRVLFASWSEGSSDRLGVMLADHGLEHVVAVRDWADVQAASKDLYLRAILP----- 439

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
                 +  G   PE     I + D  G   ++   
Sbjct: 440 ------VEHGFTTPEI--AVISETDILGDRLARPKR 467



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 71/184 (38%), Gaps = 9/184 (4%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + ++ATP    L+     I E  I  T  VD    +R+     + V   + +     +
Sbjct: 753 HLLTLTATPIPRTLQMALSGIREMSIIATPPVDRLA-VRTYVAPWDAVMVREALLREKYR 811

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +            D+ E+L  +   ++++  H ++   +  +++     G +DVLV  
Sbjct: 812 GGQAFYVCPRLSDLPDIEEFLRVQVPEIKFVVGHGQMSPTQLEDVMSAFYDGSYDVLVST 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + +  AD  G  +    L Q  GR  R+             + + L
Sbjct: 872 TIVESGIDIPTANTLIVHKADMFGLAQ----LHQIRGRIGRSKARAFAYLTVDPKRPLTL 927

Query: 700 AIDE 703
           + + 
Sbjct: 928 SAER 931


>gi|255019853|ref|ZP_05291929.1| Transcription-repair coupling factor [Acidithiobacillus caldus ATCC
           51756]
 gi|254970782|gb|EET28268.1| Transcription-repair coupling factor [Acidithiobacillus caldus ATCC
           51756]
          Length = 1149

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 95/321 (29%), Gaps = 39/321 (12%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
            G+   +  A+ +   QRP + +  N         E++ F P                EA
Sbjct: 23  HGAAGPWLAAQAVGRWQRPILAIVNNARELDAWVREWRFFAPQLG-------------EA 69

Query: 237 YV-PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            V P  D       S   +    R +   +L       V S  + +  +       Q  +
Sbjct: 70  LVFPDRDILPYDRLSPPAEATATRLATLAALPRWRGICVTSVAAALQKLPPASFLDQHAL 129

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L+ GD +E +     LV   Y+        G     G  I++FPS    + +R+ +F  
Sbjct: 130 VLRRGDQLEPEHFRQRLVDAGYRVVAEVSEPGELAWRGGIIDLFPSGSA-MPYRIELFDR 188

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           ++E I  F P + + +  V  +              L                   +   
Sbjct: 189 EVESIRSFDPESQRSLAPVAEVSTLPARELPVDEGALQAFRAR------------FRARF 236

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
             + QR                     E+Y          E P  L++++P D++L    
Sbjct: 237 SGDPQR-----AEIYRRASQGAVPAGAEHYLPLFF-----ETPGKLWDFLPRDAILLT-- 284

Query: 476 SHVTIPQISGMYRGDFHRKAT 496
                  ++ +      R   
Sbjct: 285 PPGLAEALAQVRTDWQERYEE 305



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 67/192 (34%), Gaps = 21/192 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SART--QV---EDVYDEINLA 578
            + ++ATP    L           +R   ++  P E R   RT  QV   + V +     
Sbjct: 753 VLTLTATPIPRTLNLSLAG-----LRDLSIIATPPERRQPVRTFVQVFSEDLVREACQRE 807

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVL 636
             +G +I       R  E     L       R    H ++   E   ++ D    +FD+L
Sbjct: 808 LHRGGQIYYLHNEVRDIERSAATLRRLVPEARLRVAHGQMPEAELESVMLDFYHQRFDIL 867

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +   ++  G+D P    + I  AD+ G  +    L Q  GR  R+               
Sbjct: 868 LCTTIIESGIDNPSANTMLIDRADRFGLAQ----LHQLRGRVGRSHQRAYCYLFTPDP-- 921

Query: 697 IQLAIDETTRRR 708
              A+ E  RRR
Sbjct: 922 --RAMTEDARRR 931


>gi|254502678|ref|ZP_05114829.1| transcription-repair coupling factor [Labrenzia alexandrii DFL-11]
 gi|222438749|gb|EEE45428.1| transcription-repair coupling factor [Labrenzia alexandrii DFL-11]
          Length = 1161

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 80/538 (14%), Positives = 174/538 (32%), Gaps = 80/538 (14%)

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
             +   +    L GV    +++ +A+++  +    + +      A ++           A
Sbjct: 3   DSLLKDQANVTLAGVPDGAESYALARLLTEIPAQGLALVFVARDATRMA------MISEA 56

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-----RNDCIVVS 276
           + YF    +  Q    +P  D       S N  I   R  A   L       R   +V +
Sbjct: 57  LGYFDPGAEIIQ----LPAWDCLPYDRVSPNPAISARRLLALGQLARGIAKGRKVLLVTT 112

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
             + +  I      ++  + +  G+ V+   +   L    + R       G + V G  +
Sbjct: 113 LNAAVQRIPERAFMAEQTLSMAPGNQVDMAAISKWLEMNGFSRTPTVRETGEYAVRGGIV 172

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++F +  E+   R+  FG+ +E I  F P T +  + ++ + +   S  V    +++   
Sbjct: 173 DLF-APGEEEPVRLDFFGDTLESIRSFNPETQRTSKQLKRLDLVPMSEVVLSEESISRF- 230

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
                    R   L   G       L Q I+              +E++      +    
Sbjct: 231 ---------RRSYLASFGAASRDDVLYQSIS-------DGRRYAGMEHWLPLFHDKLE-- 272

Query: 457 PPPTLFEYIPEDSLLFVDES-----HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
              TLF++I  D+ + +D          + Q++  Y+     +   +  G      M   
Sbjct: 273 ---TLFDFIG-DTPVVLDARSADAVRERLDQVAEHYKAREEAREMGSGAGTV--PYMPVP 326

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ---- 567
           P +           +   AT             ++    P G     +E+   + +    
Sbjct: 327 PEKLYFTQDEWTAALADRAT-----------ATLDPFTPPPGSGKTVIELGGRQGRSFAA 375

Query: 568 ---------VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
                     + +   +    + G R ++   +    + L + L +  +    +H  V+T
Sbjct: 376 ERTAGDVNIFDALTTHVRELQKSGKRTVIACWSDGSRDRLGQILGDHGLGA--IH-NVET 432

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           LE  E +      K   L  +  +  G ++ +     I + D  G    + S  ++ G
Sbjct: 433 LEETEKL----PAKTSALCVLG-IEHGFELSDIAF--IGEQDILGDRLVRKSRRKSKG 483



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 99/274 (36%), Gaps = 44/274 (16%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 765  HVLTLSATPIPRTLQLALTGVRELSLIATPPVDRLA-VRTFVSPFDPLVVREALLREHYR 823

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +            +  ++L E    ++V   H ++   E  +++     GK++VL+  
Sbjct: 824  GGQSFYVCPRLSDIAERRDFLEEAVPELKVAVAHGQMPPGELEDVMNAFYEGKYNVLLST 883

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+          
Sbjct: 884  TIVESGLDIPTANTLIVHRADMFGLSQ----LYQLRGRVGRSKTRAYALFTVP----ANK 935

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             +  T  RR K                  +++ ++ +       ++        +L   +
Sbjct: 936  TLTPTAERRLK------------------VLQSLETLGAGFQLASHDLDIRGAGNLLGDE 977

Query: 760  GKAHLK----SLRKQMHLAADNLNFEEA-ARIRD 788
               H+K     L +QM         EEA A+++D
Sbjct: 978  QSGHIKEVGFELYQQML--------EEAVAKLKD 1003



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 4/115 (3%)

Query: 107 ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS 166
            R+++  + L+K         +  +         F  +  Y  + DQ  AI  + + + S
Sbjct: 574 KRILEIADGLIKTAAERALKTAPVVETPEGVYDEFATKFPYEETDDQLNAIDSVFEDLSS 633

Query: 167 REK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
                +L+ G  G GKT      A +     R   V+ P  +LA Q +  F   F
Sbjct: 634 GRPMDRLVCGDVGFGKTEVALRAAFLAAMSGRQVAVVVPTTLLARQHFKTFSERF 688


>gi|260913085|ref|ZP_05919567.1| transcription-repair coupling factor [Pasteurella dagmatis ATCC
           43325]
 gi|260632672|gb|EEX50841.1| transcription-repair coupling factor [Pasteurella dagmatis ATCC
           43325]
          Length = 1145

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 73/458 (15%), Positives = 161/458 (35%), Gaps = 61/458 (13%)

Query: 163 GIHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
            I +      +LG V        + ++        +V+  +   A +L  +  + F  + 
Sbjct: 9   AIPTEANDHKILGNVLAGADALAINEIASQYSGLTVVLTADTRSAVRL-EKVLSQFSQHP 67

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
           + +F             P  +T      S +++I   R SA   L  R   I++  +S +
Sbjct: 68  ITFF-------------PDWETLPYDAFSPHQEIISYRLSALFQLQHRQKGILILPISTL 114

Query: 282 Y-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
              +   E     ++ +K GD ++  ++   L    Y+  +  +  G + V G  +++FP
Sbjct: 115 MQRLCPPEFLQHNVLLIKKGDRLQINKIRLQLESAGYRAVEQVLEHGEYAVRGALLDLFP 174

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
                V +R+  F ++I+ I  F   T + +  ++ I +     +    PT    +++ +
Sbjct: 175 MGSA-VPFRLDFFDDEIDTIRTFDVDTQRTLEEIKEINLLPAHEF----PTDEKGIEFFR 229

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
            + +    E+ ++   +  Q            +        IE +          E   T
Sbjct: 230 SQFRETFGEIRRDPEHIYQQ------------VSKGTLISGIEYWQPLFF-----EQMAT 272

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           LF Y+P++SL    +      Q    Y+    R  +              RPL       
Sbjct: 273 LFAYLPKNSLWI--DIGDIQAQGERFYQDAQQRYESR--------KVDPMRPL------- 315

Query: 521 LRPTTIVVSATPGSWELEQCQGIIV--EQIIRPTGLVDPPVEIRS---ARTQVEDVYDEI 575
           L P  + +     + EL++   I    E++       +  V+       ++Q ++    +
Sbjct: 316 LAPERLWLRIDEINRELKRYPRISFNAEKVRSSVRQKNLAVQALPELTIQSQQKEPLKLL 375

Query: 576 NLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
               +Q    ++ +V ++   E L + L    I    +
Sbjct: 376 RQFTEQFKGNVVFSVESEGRRETLRDLLSPLKIMATKI 413



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 71/182 (39%), Gaps = 15/182 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
            + ++ATP    L     GI    II         + I++   Q +D+   + I     +
Sbjct: 752 ILTLTATPIPRTLNMAMHGIRDLSIISTP--PARRLTIKTFVKQADDLVIREAILREILR 809

Query: 582 GLRILLT---VLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V +     E LT  + E  I V   H +++  E   ++ D    +F+VLV
Sbjct: 810 GGQVYYLHNDVASIENCAEKLTALVPEARITVG--HGQMRERELERVMSDFYHQRFNVLV 867

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 868 CSTIIETGIDVPTANTIIIERADNFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKTM 923

Query: 698 QL 699
             
Sbjct: 924 TK 925



 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 4/146 (2%)

Query: 81  QSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITF 140
                 +    +  S+  +    +A  ++      LL         + ++ N   ++   
Sbjct: 534 VGGSDETAPLHKLGSDAWVKARHKAAEKIRDVAAELLDVYAQREAQKGFAFNYDREEFQQ 593

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPA 196
           F     +  + DQ  AI  ++  +   +   +L+ G  G GKT      A +     +  
Sbjct: 594 FAATFPFEETIDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQV 653

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAV 222
            V+ P  +LA Q Y  FK+ F +  V
Sbjct: 654 AVLVPTTLLAQQHYENFKDRFANLPV 679


>gi|107028877|ref|YP_625972.1| transcription-repair coupling factor [Burkholderia cenocepacia AU
           1054]
 gi|116689965|ref|YP_835588.1| transcription-repair coupling factor [Burkholderia cenocepacia
           HI2424]
 gi|105898041|gb|ABF80999.1| transcription-repair coupling factor [Burkholderia cenocepacia AU
           1054]
 gi|116648054|gb|ABK08695.1| transcription-repair coupling factor [Burkholderia cenocepacia
           HI2424]
          Length = 1156

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/457 (14%), Positives = 149/457 (32%), Gaps = 69/457 (15%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFF 217
           +  +   ++     G  GS     +A+ +   ++      V+  N + A +L  E + F 
Sbjct: 13  VARVKPGQRFAFD-GAHGSADALAIARYLADNRQDVPLLAVICANAVDAQRLSQEIRYFS 71

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVS 276
           P   V               +P  +T      S ++ +   R +    L E     ++V 
Sbjct: 72  PDARVRL-------------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVP 118

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + + +Y +      +        G+ +++ +L + L    Y+     +  G + V G  I
Sbjct: 119 ATTALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLI 178

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +++P     + +R+ +F + ++ I  F P T + +  V  +++     +           
Sbjct: 179 DLYPM-GSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA----- 232

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
              +   + R  E  +                  + +        IE Y          +
Sbjct: 233 ---RTAFRSRWRETFEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----D 275

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TLF Y+P+D+ L        +      +  D  ++     +    P           
Sbjct: 276 ETATLFHYLPQDAHLVFTGD---LEASIRRFTADTKQRHAFLAHDRERP----------- 321

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQVEDVY 572
               L P  + +S      E          +++ P     G      E+ +     +D  
Sbjct: 322 ---ILEPQRLFLS-----DEDFFAFAKPFARVVLPAQPAGGWATALPEL-TVDRHADDPL 372

Query: 573 DEINLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIR 608
             +    +  G R+LLTV +    E + + L E ++R
Sbjct: 373 ASLRTFVESSGKRVLLTVESAGRRETILQLLAEHHLR 409



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 75/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 755 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 812

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L       R +  H ++   E   ++RD    + +VL+  
Sbjct: 813 GGQVYFLHNEVETIENRKAMLEALVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +S+  
Sbjct: 873 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQSLTK 928

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 929 ---QAQRRLEAIQQME 941


>gi|167586917|ref|ZP_02379305.1| transcription-repair coupling factor [Burkholderia ubonensis Bu]
          Length = 1158

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 115/345 (33%), Gaps = 49/345 (14%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIE--AMQRPAI-VMAPNKILAAQLYSEFKNFF 217
           +  +   ++     G  GS     +A+ +       P + V+  N + A +L  E   F 
Sbjct: 13  VARVKPGQRFAFD-GAHGSADALAIARYLADNRHDLPLLAVICANAVDAQRLAQEIGYFS 71

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVS 276
           P   V               +P  +T      S ++ +   R +    L E     ++V 
Sbjct: 72  PDARVRL-------------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDVLLVP 118

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + + +Y +      +        G+ +++ +L + L    Y+     +  G + V G  I
Sbjct: 119 ATTALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLI 178

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++FP     + +R+ +F + ++ I  F P T + +  V  +++     +           
Sbjct: 179 DLFPM-GSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA----- 232

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
              +   + R  E  +                  + +        IE Y          +
Sbjct: 233 ---RTAFRSRWRETFEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----D 275

Query: 457 PPPTLFEYIPEDS-LLFVDESHVTIP-------QISGMYRGDFHR 493
              TLF Y+P+D+ L+F  +   +I        Q       D  R
Sbjct: 276 ETATLFHYLPQDAHLVFTGDLDASIRRFTADTKQRHAFLSHDRER 320



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 24/150 (16%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            QV  +++E+     +          K M E+L     E  I +   H ++   E   ++
Sbjct: 814 GQVYFLHNEVETIENR----------KAMLEELV---PEARIAIA--HGQMHERELERVM 858

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RD    + +VL+   ++  G+D+P    + +  +DK G  +    L Q  GR  R+ +  
Sbjct: 859 RDFVAQRANVLLCTTIIETGIDVPSANTIIMHRSDKFGLAQ----LHQLRGRVGRSHHQA 914

Query: 686 VILYADTITKSIQLAIDETTRRRE--KQLE 713
                    +++     +  RR E  +Q+E
Sbjct: 915 YAYLLVHDPQALTK---QAQRRLEAIQQME 941


>gi|332558234|ref|ZP_08412556.1| transcription-repair coupling factor [Rhodobacter sphaeroides WS8N]
 gi|332275946|gb|EGJ21261.1| transcription-repair coupling factor [Rhodobacter sphaeroides WS8N]
          Length = 1165

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 85/512 (16%), Positives = 169/512 (33%), Gaps = 73/512 (14%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
                 LL G         +AK ++    P I +A +      + +      P   V   
Sbjct: 2   QNGTRILLGGAPEGYDARLVAKELDRGA-PVIHVARDDKRLEAMRTALTVMAPRAVVL-- 58

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV---SSVSCIY 282
                       +P  D       S N +I   R +   +L        V   +  +   
Sbjct: 59  -----------ELPAWDCLPYDRVSPNPEISARRMATLAALAHGMPGAFVLLTTLNAATQ 107

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            I + E         ++GD V++  L S L +  +   D     G + + G  ++I+P  
Sbjct: 108 RIPAREVLRAASFSARVGDRVDEGRLRSYLARMGFSLTDTVTEAGDYAIRGGIVDIYPPG 167

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
           +     R+  FG+ ++    F P T + +  ++ +++   S  +     +    +  + E
Sbjct: 168 VAG-PVRLDFFGDVLDGARRFDPETQRTVEKLDLVELAPVSEVMLDEGAITRFRQNYRIE 226

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
                      G                E +      Q +E++  +   R       TLF
Sbjct: 227 -------FGAAGTD----------DPLYEAVSAGRKHQGMEHWLPFFHARLE-----TLF 264

Query: 463 EYIPEDSLLFVDE-SHVTIPQISGMYRGDFHRKATLAEYGFRL-----PSCMDNRPLRFE 516
           +Y+PE S++  D+ +   I +  G+      R+  +   G RL     P+  D   L   
Sbjct: 265 DYLPEASVMLDDQVTPARISRWEGIADQYDARREAMTAKG-RLDTVYKPAAPDLLYLDEA 323

Query: 517 EWNC-----LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            W              ++ +PG   L+   G +           +   E  S    + D 
Sbjct: 324 AWEAAVAGHRVIQLSPLAQSPGPGVLD-AGGRMGRSF-----APERQAENISLFGALVDH 377

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
              +    ++  ++++   ++   E L   L E  ++   +         ++ IRD+  G
Sbjct: 378 VRSL----REDRQVVIASWSEGARERLKGLLEEAGLQGTKL---------VQDIRDVPEG 424

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +    + +  L +G   P  GL  I + D  G
Sbjct: 425 RGGTHLMVWALEQGFTAP--GLAVISEQDVLG 454



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 91/259 (35%), Gaps = 37/259 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 754 HVLTLTATPIPRTLQLSLTGVRDLSIIATPPVDRLA-IRTYVSEFDTVTIREALLRERYR 812

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       D+  +L +    V Y+  H ++   E  E +     GKFDVL+  
Sbjct: 813 GGQSFFVVPRLSDLPDMEAFLRDHVPEVSYVVAHGQLAAGELDERMNAFYDGKFDVLLAT 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R                +  
Sbjct: 873 TIVESGLDIPTANTMIVHRADMFGLSQ----LYQIRGRVGRAKTRAYCYLTTKPRAPL-- 926

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                                 PQ++K  +++  +D +       ++        +L  +
Sbjct: 927 ---------------------TPQAIKRLRLLASLDSLGAGFNLASHDLDLRGAGNLLGE 965

Query: 759 KGKAHLK----SLRKQMHL 773
           +   H+K     L +QM  
Sbjct: 966 EQSGHIKEVGYELYQQMLE 984



 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            Y  + DQ +AIA ++K + S     +L++G  G GKT      A V         V+ P
Sbjct: 602 PYQETDDQLSAIADVVKDLESGSPMDRLVVGDVGFGKTEVAMRAAFVAALAGMQVAVICP 661

Query: 202 NKILAAQLYSEFKNFF 217
             +LA Q +  F   F
Sbjct: 662 TTLLARQHFRSFAERF 677


>gi|310815553|ref|YP_003963517.1| transcription-repair coupling factor [Ketogulonicigenium vulgare
           Y25]
 gi|308754288|gb|ADO42217.1| transcription-repair coupling factor [Ketogulonicigenium vulgare
           Y25]
          Length = 1152

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 83/525 (15%), Positives = 171/525 (32%), Gaps = 71/525 (13%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
               + G         + + I     P + +A +    A + +    F P   V  F   
Sbjct: 6   HHITVSGAPEGFDARLILQEIAKSGGPLVHVARDDRRLAAMQAALAFFDPAMPVFVF--- 62

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL---LERNDCIVVSSVSCIYGIG 285
                     P  D       S N +I   R +   +L   + +   ++ +  +    + 
Sbjct: 63  ----------PAWDCLPYDRISPNPEISAARMATLAALTHGMPQRYVLLTTLNAATQKLP 112

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +     +    + +G  V++  L + LV+  Y +       G F   G  ++IFP    D
Sbjct: 113 ARALLRKSAFAVDVGTRVDEAALRAFLVRMGYSQASTVAEPGDFAWRGGIVDIFPPGR-D 171

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
           +  R+  FG+ ++    F P T + +  ++ I++   S  V    ++             
Sbjct: 172 LPVRLDFFGDVLDGARTFDPATQRTVEKLDRIELSPVSEVVLDEASITRF---------- 221

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
           R       G       L + ++              +E++  +           +LF+Y+
Sbjct: 222 RQNYRIAFGAGGADDPLYESVS-------AGRKHAGMEHWLGFFHDHLE-----SLFDYL 269

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDF--HRKATLAEY----GFRLPSCMDNRPLRFEEWN 519
           P  + + +D+    I +       D    R+  LA+         P+  +   L    W 
Sbjct: 270 P-GATITLDDQSDAIREARWATIADQYGARQHALAQRRGNDSVYKPAPPETLYLDDAAWE 328

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
                  V+   P    L+Q  G+ V       G    P   + + +  + + D +    
Sbjct: 329 AAVGPRRVLRYAP----LKQPTGLGVIDAGGTIGRDFAPERQQESISLFKALSDYVKP-L 383

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL-RLGKFDVLVG 638
            +   +++   ++   E LT  L +  I              +  + D  R+GK  + + 
Sbjct: 384 SKDHAVIIASYSEGARERLTGLLEDEGIG------------EVIPVTDFSRVGKRGIHIA 431

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  L  G + P   +V       E  +  +  + QT  R  R  N
Sbjct: 432 VWALEAGFNAPGLHVV------SEQDVLGERLIRQTR-RKKRAEN 469



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 104/283 (36%), Gaps = 51/283 (18%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + ++ATP    L+     + +  I  T  +D    IR+  ++ + +   + +     +
Sbjct: 747 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPIDRLA-IRTYVSEFDTITVREALLREHYR 805

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +  + V       ++ E+L      V+Y+  H ++   E  + +     GK+DVL+  
Sbjct: 806 GGQSFIVVPRLSDLPEMEEFLQREVPEVKYVTAHGQMAAGELDDRMNAFYDGKYDVLLAT 865

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SKV  YA   TK  Q 
Sbjct: 866 TIVESGLDIPTANTMIVHRADMFGLAQ----LYQIRGRVGR---SKVRAYAYLTTKPRQK 918

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                               + P + K  +++  +D +       +         +L  +
Sbjct: 919 --------------------LTPAAEKRLRVLGSLDSLGAGFQLASQDLDIRGAGNLLGE 958

Query: 759 KGKAHLK----SLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           +    ++     L +QM                DEI R+KS  
Sbjct: 959 EQSGQIREVGYELYQQMLE--------------DEIARIKSGE 987


>gi|163760200|ref|ZP_02167283.1| transcription-repair coupling factor (TRCF) protein [Hoeflea
           phototrophica DFL-43]
 gi|162282599|gb|EDQ32887.1| transcription-repair coupling factor (TRCF) protein [Hoeflea
           phototrophica DFL-43]
          Length = 1168

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 82/524 (15%), Positives = 160/524 (30%), Gaps = 72/524 (13%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           +  +        L GV    +   +A+ I     P   +  +    A L      + P  
Sbjct: 7   VSQVTGAHTPVTLAGVPQGMEALALAE-IARGSGPLAHIISDGQRMADLEQNLAFYAPDI 65

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-----RNDCIVV 275
            V               +P  D       S    +   R SA  +L +         ++V
Sbjct: 66  PVLT-------------LPGWDCLPYDRVSPGADVSARRLSALSALADFADNPHPAIVLV 112

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +  + +  +      S +    + G+ ++ + L   L +Q ++R +     G F V G  
Sbjct: 113 TVNAMLQRVPPKAVVSDLGFSARAGNRLKMESLSGRLAQQGFERVETVREVGEFAVRGGI 172

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +++F    E+   R+  FG+ +E I  F P T +     +   + A S       T++  
Sbjct: 173 LDVFVPGAEE-PVRLDFFGDTLESIRNFDPATQRSTTPSKEFSLNAMSEVTLEPETISRF 231

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
                     R   LE  G       L   I+              +E++          
Sbjct: 232 ----------RRNYLETFGAATRDDALYVAIS-------EGRRYPGMEHWLPLFHDEM-- 272

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL-----AEYGFRLPS---- 506
               T+F+Y+   +   V   H+ +                       E G  + +    
Sbjct: 273 ---ATVFDYL---AGFRVSGDHMLMEAAGERRAQILDHFEARQTAQSIEKGKGVQTTPYK 326

Query: 507 --CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR--PTGLVDPPVEIR 562
               D   L   E          +  TP   E E     +++      P    D   +  
Sbjct: 327 AIQPDRLYLDTPELQASLDQRNAIRLTP-FHEPENSARRVIDLPTATGPRWAADAEADTS 385

Query: 563 SARTQV---EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           +   +V   + +   +      G ++L+T  T+   + L +   E  +        V+ +
Sbjct: 386 AEGARVNLFDKLVAHVGTKRNAGRKVLVTAWTEGSLDRLLQVTEEHGLAR------VRRI 439

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                +  L+ G+    V    +  G +I +  LV I + D  G
Sbjct: 440 NSHAELETLKPGEAAAAVLA--IEGGFEIGD--LVVIGEQDVLG 479



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 73/183 (39%), Gaps = 9/183 (4%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  +  T  VD    +R+  +  + V   + +     +
Sbjct: 774 HVLTLSATPIPRTLQLAMTGVRELSLITTAPVDRMA-VRTFISPFDPVTVRETLMREHYR 832

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +           +++  +L      +++   H ++   E  +I+     G++DVL+  
Sbjct: 833 GGQSFYVCPRVSDLDEVAAFLRSDVPELKFAIAHGQMGAGELDDIMNAFYDGQYDVLLST 892

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLD+P    + +  AD  G  +    L Q  GR  R+      L+   + K++  
Sbjct: 893 TIVESGLDVPTANTLIVHRADMFGLAQ----LYQLRGRVGRSKVRAFALFTLPVNKTLTA 948

Query: 700 AID 702
             D
Sbjct: 949 TAD 951


>gi|315180610|gb|ADT87524.1| transcription-repair coupling factor [Vibrio furnissii NCTC 11218]
          Length = 1125

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 102/292 (34%), Gaps = 38/292 (13%)

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
              +A++    Q   ++  P+   A +L  E    F    V  F             P  
Sbjct: 2   ALAIAELANQHQGHTLLAVPDPQTALKLLQEI-EQFSQANVALF-------------PDW 47

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS-QMIVQLKIG 300
           +T      S +++I   R S    L   +  I +  VS +    +   Y  Q  + +  G
Sbjct: 48  ETLPYDNFSPHQEIISERISRLYQLPSLSQGITIVPVSTLLQRQTPRDYLLQHTLMVNRG 107

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           D     +L   L    Y+  D     G +   G  +++FP    D  +R+  F ++I+ I
Sbjct: 108 DRFSLDKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSAD-PYRIDFFDDEIDTI 166

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
             F P   + I  ++ I++     +    PT   A++  +   + R           EA+
Sbjct: 167 RTFDPENQRSIDEIDAIRLLPAHEF----PTTEQAIEEFRTRWRGR----------FEAR 212

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           R  + +      +        IE +          +   TLF+Y+P  S L 
Sbjct: 213 REPESVYM---QVSKGTWPAGIEYWQPLFF-----DHTETLFDYLPAGSQLL 256



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 69/181 (38%), Gaps = 13/181 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q ED  + + +     +G
Sbjct: 726 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRMA-IKTFVRQSEDSVIREAVLREIMRG 784

Query: 583 LRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++          +    DL + + E  I V   H +++  E   ++ D    +F++LV 
Sbjct: 785 GQVYFLHNQVESIDKVAADLEKLIPEARITVA--HGQMRERELERVMNDFYHQRFNLLVC 842

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K++ 
Sbjct: 843 TTIIETGIDVPTANTIIMDRADSLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAMT 898

Query: 699 L 699
            
Sbjct: 899 K 899


>gi|78066724|ref|YP_369493.1| transcription-repair coupling factor [Burkholderia sp. 383]
 gi|77967469|gb|ABB08849.1| transcription-repair coupling factor [Burkholderia sp. 383]
          Length = 1156

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 68/457 (14%), Positives = 149/457 (32%), Gaps = 69/457 (15%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFF 217
           +  +   ++     G  GS     +A+ +   ++      V+  N + A +L  E + F 
Sbjct: 13  VARVKPGQRFAFD-GAHGSADALAIARYLADNRQDVPLLAVICANAVDAQRLSQEIRYFS 71

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVS 276
           P   V               +P  +T      S ++ +   R +    L E     ++V 
Sbjct: 72  PDARVRL-------------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVP 118

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + + +Y +      +        G+ +++ +L + L    Y+     +  G + V G  I
Sbjct: 119 ATTALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLI 178

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +++P     + +R+ +F + ++ I  F P T + +  V  +++     +           
Sbjct: 179 DLYPM-GSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA----- 232

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
              +   + R  E  +                  + +        IE Y          +
Sbjct: 233 ---RTAFRSRWRETFEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----D 275

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TLF Y+P+D+ L        +      +  D  ++     +    P           
Sbjct: 276 ETATLFHYLPQDAHLVFTGD---LEASIRRFTADTKQRHAFLAHDRERP----------- 321

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQVEDVY 572
               L P  + +S      E          +++ P     G      E+ +     +D  
Sbjct: 322 ---ILEPQRLFLS-----DEDFFAFAKPFARVVLPAQPAGGWATALPEL-TVDRHADDPL 372

Query: 573 DEINLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIR 608
             +    +  G R+LLTV +    E + + L E ++R
Sbjct: 373 ASLRTFVESSGKRVLLTVESAGRRETILQLLAEHHLR 409



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 75/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 755 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 812

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L       R +  H ++   E   ++RD    + +VL+  
Sbjct: 813 GGQVYFLHNEVETIENRKAMLEALVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  +DK G  +    L Q  GR  R+ +           +++  
Sbjct: 873 TIIETGIDVPSANTIIMHRSDKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQALTK 928

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 929 ---QAQRRLEAIQQME 941


>gi|291617056|ref|YP_003519798.1| Mfd [Pantoea ananatis LMG 20103]
 gi|291152086|gb|ADD76670.1| Mfd [Pantoea ananatis LMG 20103]
 gi|327393507|dbj|BAK10929.1| transcription-repair coupling factor Mfd [Pantoea ananatis AJ13355]
          Length = 1156

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 117/311 (37%), Gaps = 40/311 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + S ++ QL  G +TG+      A + E    P +++ P+   A +L  E + F      
Sbjct: 18  VKSGDQRQL--GQLTGAAHAVECASITERHAGPVLMITPDTQTALRLLDEIRQFTD---- 71

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                      P  ++   +T      S ++ I   R S    L      +++  V+ + 
Sbjct: 72  ----------LPVTHLADWETLPYDSFSPHQDIISARLSTLYQLPTLQRGMLIMPVNTLM 121

Query: 283 GIGSVESYSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                 S+     + ++ G  + +  L   L +  Y+  D  +  G +   G  +++FP 
Sbjct: 122 QRVCPHSFLHGHALVMQQGQKLSRDRLRDQLEQAGYRHVDQVMEHGEYATRGALLDLFPM 181

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E   +R+  F ++I+ +  F   + + +  V  I +     + + +     A++  + 
Sbjct: 182 GSE-QPYRIDFFDDEIDSLRLFDVDSQRTLEAVPAINLLPAHEFPSDK----AAIELFRS 236

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             +             EA+ + Q+++              IE +          +P P+L
Sbjct: 237 RWRE------IFDVRREAEHVYQQVSK-------GTLPAGIEYWQPLF----FEQPLPSL 279

Query: 462 FEYIPEDSLLF 472
           F Y+P+++L+ 
Sbjct: 280 FSYLPDNTLIV 290



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  + + I     +
Sbjct: 758 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREFDDLV--IREAILREILR 815

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E   + L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 816 GGQVYYLYNDVENIEKAAQRLTELVPEARVAIGHGQMRERDLERVMNDFHHQRFNVLVCT 875

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 876 TIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 929


>gi|298207099|ref|YP_003715278.1| transcription-repair coupling factor [Croceibacter atlanticus
           HTCC2559]
 gi|83849733|gb|EAP87601.1| transcription-repair coupling factor [Croceibacter atlanticus
           HTCC2559]
          Length = 1126

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 95/238 (39%), Gaps = 18/238 (7%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
                   L G+ GS  +F +A+  +   +P + +  +K  AA   ++F+     + V +
Sbjct: 27  QENYHKTTLTGLVGSAVSFAIAEAFKQADKPFLAIFNDKEEAAYYLNDFEQLIKDDEVLF 86

Query: 225 FV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC--IVVSSVSCI 281
           +  SY   YQ           IE+  + N     +R      L  R     IV    +  
Sbjct: 87  YPGSYRRPYQ-----------IEETDNANVL---LRAEVLNRLNSRRKPALIVTYPDALF 132

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             + + +   +  ++L +G+ V    +   L + ++ R D     G F + G  +++F S
Sbjct: 133 EKVVTKKELEKNTLKLSVGEQVSIDFVNEVLFEYKFHRVDFVTEPGEFSLRGGILDVF-S 191

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
              D  +R+  FG++++ I  F   T   +   + I I  N      + +  + +KYI
Sbjct: 192 FSHDEPFRIEFFGDEVDSIRTFDVETQLSLEQTKKISIIPNVENKLLQESRESFLKYI 249



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 66/176 (37%), Gaps = 7/176 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +   I        PVE    R   E + D +    Q+G 
Sbjct: 708 TLTLTATPIPRTLQFSLMAARDLSTITTPPPNRYPVETNVIRFSEESIRDAVQYEIQRGG 767

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   +       +    H +++  +  +++     G FDVLV   +
Sbjct: 768 QVYFVHNRIENIKEVAGMIQRVVPDAKIGIGHGQMEGKKLEQLMLSFMNGDFDVLVSTTI 827

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  GLD+P    + I +A+  G     + L Q  GR  R+       +      ++
Sbjct: 828 IESGLDVPNANTIFINNANNFGL----SDLHQMRGRVGRSNKKAFCYFITPPYSAM 879



 Score = 40.8 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A   G ++ + V T     +  +  +E L +  + V Y++      ER
Sbjct: 590 GKTEIAIRAAFKAVDNGKQVAVLVPTTILAFQHHKTFSERLKDFPVTVEYLNRFRSAKER 649

Query: 622 IEIIRDLRLGKFDVLVGI-NLLREGLDIPECGLVAILDADKEG 663
            E I DL  GK D+++G   L+ + +   + GL+ + +  K G
Sbjct: 650 RETIADLEAGKVDIIIGTHQLVNKTVKFKDLGLLIVDEEQKFG 692


>gi|227822023|ref|YP_002825994.1| putative transcription-repair coupling factor [Sinorhizobium fredii
           NGR234]
 gi|227341023|gb|ACP25241.1| putative transcription-repair coupling factor [Sinorhizobium fredii
           NGR234]
          Length = 1170

 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 84/513 (16%), Positives = 172/513 (33%), Gaps = 56/513 (10%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           I +  +   +  V    +   +A +      P      +    A L        P   V 
Sbjct: 10  IFASAREVTIGPVPSGAEALILADL-ARAGAPVAYFLSDGQRIADLEQVLGFVAPDIPVL 68

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
               + D    +   P  DT   + ++++  I   RH            ++V+  + +  
Sbjct: 69  TLPGW-DCLPYDRVSPSADTSARRLAALSALIAH-RHK------PHPAIVLVTVNAALQK 120

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           I   +    +    + G+ V   +L + L +  ++R       G F V G  ++++    
Sbjct: 121 ISPQDVIESLAFSARPGNQVRMDDLAAQLERNGFERVPTVREVGEFAVRGGILDVYVPGS 180

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
            +   R+  FG+ +E I  F P + +    V ++ +   S       T++          
Sbjct: 181 GE-PLRLDFFGDTLETIRSFDPASQRTTGQVRSLDLNPMSEVSLTPETISHF-------- 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
             R   L   G       L Q ++              +E++      R       T+F+
Sbjct: 232 --RKQYLSLFGAATRDDALYQAVS-------EGRRYAGMEHWLPLFYDRLE-----TIFD 277

Query: 464 YIPEDSLLFVD----ESHVTIPQISGMYRGDFH-----RKATLAEYGFRLPSCMDNRPLR 514
           Y+ E   +  D    E+     ++   Y    H      K+ +++     P   +   L 
Sbjct: 278 YL-EGFRIVTDHLAREAAAERSKLILDYYEARHASASPSKSQISQGTPYKPVPPELLYLS 336

Query: 515 FEEWNCLRPTTIVVSATP-GSWELEQCQGIIVE--QIIRPTGLVDPPVEIRSARTQV-ED 570
            + ++        V  +P    E E  Q + VE  Q +R         E   AR  V + 
Sbjct: 337 AQGFSAGLTERHAVRLSPFSEHEGEARQVMTVEARQGVRWAKTAGETEEGDGARANVFDQ 396

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
               I     +G +++++  T+   + L + L E  +        ++ ++ +  +R L+ 
Sbjct: 397 AVKHIAERRAKGAKVVISGWTEGSLDRLLQVLAEHGLA------NIRPVKALADLRSLKP 450

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           G+    V    L  G +  +  LV I + D  G
Sbjct: 451 GEAASAVLS--LESGFETGD--LVVIGEQDILG 479



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 97/268 (36%), Gaps = 36/268 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 774  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFISPFDALVIRETLMREHYR 832

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +            ++ ++L      ++V   H ++   E  +I+     G++DVL+  
Sbjct: 833  GGQSFYVCPRLSDLSEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLST 892

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLD+P    + +  AD  G  +    L Q  GR  R+      L+   + K++  
Sbjct: 893  TIVESGLDVPTANTLVVHRADMFGLAQ----LYQLRGRVGRSKVRAFALFTLPVNKTLTG 948

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
                   RR K                  +++ +D +       ++        +L   +
Sbjct: 949  ----PAERRLK------------------VLQSLDTLGAGFQLASHDLDIRGAGNLLGGE 986

Query: 760  GKAHLK----SLRKQM-HLAADNLNFEE 782
               H+K     L +QM   A   L  EE
Sbjct: 987  QSGHIKEVGFELYQQMLEEAVAELKGEE 1014


>gi|150024302|ref|YP_001295128.1| transcription-repair coupling factor [Flavobacterium psychrophilum
           JIP02/86]
 gi|149770843|emb|CAL42308.1| Transcription-repair coupling factor [Flavobacterium psychrophilum
           JIP02/86]
          Length = 1117

 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 102/247 (41%), Gaps = 17/247 (6%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           A I  LLK I    K+  + G+ GS  +F +  +    +   +++   K  AA + ++ +
Sbjct: 14  AKIVNLLKTIKGDNKIH-IKGLVGSSFSFVIEALFAKSENSFLLLCNEKEEAAYILNDLE 72

Query: 215 NFFPHNAVEYFVSYYD-YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                  V ++ S Y   YQ E      DT        +E ++R+          +   I
Sbjct: 73  QLVSDQDVLFYPSSYRRPYQIE------DTDNANVLLRSEVLNRLN-------SRKKPAI 119

Query: 274 VVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +VS    I+  + + +   +  +++ +GD V    +   L + ++KR D     G F V 
Sbjct: 120 IVSYPEAIFEKVVTKKELDKNTLKISVGDLVSIDFINEVLFEYEFKRVDFITEPGEFSVR 179

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  +++F S   D  +R+  FGN+++ I  F   T   I     I I  N      +   
Sbjct: 180 GGILDVF-SFSNDNPYRIEFFGNEVDSIRTFDVATQLSIEKKNKIAIIPNFENKFLQENR 238

Query: 393 NTAMKYI 399
            + ++YI
Sbjct: 239 ESFLEYI 245



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 71/190 (37%), Gaps = 12/190 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +  +I        P+E        E + D I+   ++G 
Sbjct: 710 TLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIETHVVGFNEETIRDAISFEIERGG 769

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   +       +    H ++   +  E++     G+FDVLV   +
Sbjct: 770 QVFFINNRIENIKEVAGMIQRLVPDAKVGIGHGQMDGKKLEELMLAFMEGEFDVLVATTI 829

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+P    + I +A+  G     + L Q  GR  R+       +       +    
Sbjct: 830 IESGLDVPNANTIFINNANNFGL----SDLHQMRGRVGRSNKKAFCYFICPPYSVM---- 881

Query: 702 DETTRRREKQ 711
            E  R+R  Q
Sbjct: 882 TEDARKR-IQ 890



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A   G ++ + V T     +     TE L +  + + Y++      ++
Sbjct: 592 GKTEVAIRAAFKAVDNGKQVAILVPTTILAYQHYRTFTERLKDMPVTINYLNRFKTAKQK 651

Query: 622 IEIIRDLRLGKFDVLVGI-NLLREGLDIPECGLVAILDADKEG 663
            E ++DL  GK D+++G   L+ + +   + GL+ + +  K G
Sbjct: 652 AETLKDLEAGKVDIVIGTHQLVSKNVIFKDLGLLIVDEEQKFG 694


>gi|329999583|ref|ZP_08303456.1| transcription-repair coupling factor [Klebsiella sp. MS 92-3]
 gi|328538286|gb|EGF64428.1| transcription-repair coupling factor [Klebsiella sp. MS 92-3]
          Length = 1126

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 109/296 (36%), Gaps = 35/296 (11%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
            G+     +A++ E    P +++AP+   A +L  E +  F  + V     + +    ++
Sbjct: 1   PGAACATLVAEMAERHSGPVVLVAPDMQNALRLNDEIRQ-FTDSMVMGLADW-ETLPYDS 58

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           + P  D    + +++ +     R             ++V   + +  +          + 
Sbjct: 59  FSPHQDIISSRLATLYQLPTMQR-----------GVLIVPVSTLMQRVCPHSFLHGHALV 107

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           +K G  + +  L   L    Y+  D  +  G +   G  +++FP    D  +R+  F ++
Sbjct: 108 MKKGQRLSRDALRDQLEGAGYRHVDQVMEHGEYATRGALLDLFPM-GSDQPYRLDFFDDE 166

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           I+ +  F   + + +  V  I +     +    PT  TA++  + + + R          
Sbjct: 167 IDSLRLFDVDSQRTLEEVAAINLLPAHEF----PTDQTAIELFRSQWRDR---------- 212

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
            E +R  + I    + +        IE +          EP P LF Y P  +L+ 
Sbjct: 213 FEVKRDAEHI---YQQVSKGTLPAGIEYWQPLFFS----EPLPPLFSYFPASTLIV 261



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + I     +
Sbjct: 729 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDALV--VREAILRETLR 786

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          +   + L E     R    H +++  E   ++ D    +F+VLV  
Sbjct: 787 GGQVYYLFNDVENIQKAADKLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 846

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 847 TIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 900


>gi|255659238|ref|ZP_05404647.1| transcription-repair coupling factor [Mitsuokella multacida DSM
           20544]
 gi|260848692|gb|EEX68699.1| transcription-repair coupling factor [Mitsuokella multacida DSM
           20544]
          Length = 1129

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 93/238 (39%), Gaps = 15/238 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A+ +L        +  L+ G+ GS K   +A    A+ +   ++  +    A    +
Sbjct: 10  QDGALQRLRDHTQGEPRESLIYGLGGSQKHAAVAACYAALPQMMAILCHSAESLADWKED 69

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                P               P   +P  DT+  K ++ +++    R      L+     
Sbjct: 70  LSLLLPEV-------------PIVELPEVDTFDVKAAAKSQERAARRMEVLGRLVRGEHI 116

Query: 273 IVVS-SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV++ + + +        + ++ + L++G+ + ++ELL  LV   Y+  +     G F V
Sbjct: 117 IVLARTEAAVQKGMGRNEFKRLSLTLRMGEVLPREELLERLVDLGYEHAEEVERVGQFSV 176

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
            G  ++IF +    V  RV  F ++I+ + EF   T +  +NV    I   +      
Sbjct: 177 RGGIVDIF-AINAAVPVRVEYFDDEIDSLREFDLDTKRSTKNVGAATIMPLAQTDASG 233



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     G     II        PV+          + + I    ++G 
Sbjct: 704 VLTLSATPIPRTLHMSLVGARDMSIIETPPAERFPVQTYVVENNDTIIANAIRREMKRGG 763

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + + +++       R    H ++       ++ D   G +D+L+  ++
Sbjct: 764 QVYFIYNRVDTIDRMRDHIESLVPEARIQTAHGQMPEEMLEHVMMDFYEGDYDILLATSI 823

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+     + + +AD  G  +    L Q  GR  R+ +     +           +
Sbjct: 824 VENGLDVANANTIIVYNADHFGLSQ----LYQMRGRVGRSHHMAFAYFVY----QADKIL 875

Query: 702 DETTRRREKQLEHNKKHN 719
            ET  +R + ++   +  
Sbjct: 876 TETAEKRLQAMKEFAELG 893


>gi|85717289|ref|ZP_01048243.1| transcription-repair coupling factor [Nitrobacter sp. Nb-311A]
 gi|85695878|gb|EAQ33782.1| transcription-repair coupling factor [Nitrobacter sp. Nb-311A]
          Length = 1174

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 72/449 (16%), Positives = 139/449 (30%), Gaps = 51/449 (11%)

Query: 180 GKTFTMAKV--------IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G+  T+A V        I  + R     A     A  L    ++      +   + ++  
Sbjct: 15  GRPLTLANVAEGAEGLVISDLARSIKANAGRGASAVSLAVVCRDGPRMQQLARGLEFFAP 74

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-----ERNDCIVVSSVSCIYGIGS 286
             P    P  D       S +  +   R +    L      E    ++ +  + +  + +
Sbjct: 75  DIPVMQFPAWDCQPYDRVSPHGGLLAQRLTTLARLSRLTGSETPLIVLTTVNAVLQRVPA 134

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            E  +   + +  G  V    ++  L    Y R       G + V G  +++FPS L D 
Sbjct: 135 REIVASQALSVAPGHVVPMDSIVVWLEHNGYNRSSTVREPGEYAVRGGILDLFPSSL-DQ 193

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R   FG+ +E I  F P T + + +V ++ +   S +      +             R
Sbjct: 194 PVRFDFFGDSLESIRSFDPETQRTLFDVRSLDLVPISEFQFVTEAIRRF----------R 243

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           +  +   G         +R     E +        +E++      R       TLF+Y+ 
Sbjct: 244 MGYVAAFGAP-------ERDDLLYEAVSEGRRYPGMEHWLPLFHERM-----DTLFDYL- 290

Query: 467 EDSLLFVDESH---VTIPQISGMYRGDFHRKATLAEYGFRLPSC---MDNRPLRFEEWNC 520
            D    V E         +   +      R+  L   G  LP      D   L  +EW  
Sbjct: 291 -DGAAIVIEPQGEDAASERFKQITDYFEARREALEHAGGGLPYKPLPPDRLYLTPDEWTK 349

Query: 521 LRPTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
                 +V  +P     E          Q     G    P    ++    E V   +   
Sbjct: 350 RINEAALVRLSPFAVPDETVNVIDAGARQ-----GRNFVPERADASVNVFESVVSHVRTL 404

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNI 607
                ++++T+ ++   + +   L +  +
Sbjct: 405 QATRKKVVVTLWSEGSRDRMASMLKDHGL 433



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 75/191 (39%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + +  I  +  VD    +R+     + +   + +     +
Sbjct: 774 HVLTLSATPIPRTLQLALTGVRDLSIIASPPVDRLA-VRTFVAPHDPLMIREALLRERYR 832

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ ++L +    ++V   H ++      +II     GK+DVL+  
Sbjct: 833 GGQAFYVVPRVSDLAEVKDFLDKHVPEMKVAVAHGQMPPTVIEDIISAFYDGKYDVLLST 892

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  +D  G  +    L Q  GR  R   SK+  YA     S   
Sbjct: 893 TIVESGLDIPTANTLIVHRSDMFGLAQ----LYQLRGRVGR---SKLRAYALFTLPSTHK 945

Query: 700 AIDETTRRREK 710
              +  RR + 
Sbjct: 946 ITAQAERRLKV 956


>gi|152978238|ref|YP_001343867.1| transcription-repair coupling factor [Actinobacillus succinogenes
           130Z]
 gi|150839961|gb|ABR73932.1| transcription-repair coupling factor [Actinobacillus succinogenes
           130Z]
          Length = 1148

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 58/335 (17%), Positives = 119/335 (35%), Gaps = 40/335 (11%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           I ++     +LG V        +A++    +   +++  +   A +L    +        
Sbjct: 10  IPTQSNDHKILGNVLAGADCLAIAEIAAQHKGLTVIVTQDSKSAVRLEKVLREITATEIC 69

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
            +              P  +T      S +++I   R SA   L + N  I++  V+ + 
Sbjct: 70  LF--------------PDWETLPYDAFSPHQEIISARLSALFYLQQANRGILLLPVTTLM 115

Query: 283 -GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +       Q ++ +K GD    + L   L    Y+  +  +  G F V G  +++FP 
Sbjct: 116 QRVCPPSFLQQNVLLIKNGDRFNIERLRLQLENAGYRTVEQVLEPGEFAVRGSLLDLFPM 175

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
               + +R+  F ++I+ I  F   T + +  +  I +     +    PT +  +++ + 
Sbjct: 176 -GSPLPFRLDFFDDEIDSIRTFDVETQRTLAEIPQINLLPAHEF----PTDSKGIEFFRA 230

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             +    E+ ++   +  Q            +        IE +          E   TL
Sbjct: 231 RFRATFGEIRRDPEHIYQQ------------VSKGTLVSGIEYWQPLFF-----EQMGTL 273

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F+Y+P +SLL   ES     Q    Y     R  +
Sbjct: 274 FDYLPANSLLV--ESEQNAEQAIRFYADAEQRFES 306



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 13/181 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +D+   + I     +G
Sbjct: 755 ILTLTATPIPRTLNMAMNGIRDLSIIST-PPARRLTIKTFVRQQDDLTVREAILREILRG 813

Query: 583 LRILLT---VLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++      V +     E LT  + E  + V   H +++  E   ++ D    +F+VLV 
Sbjct: 814 GQVYYLHNDVASIENCAEKLTALVPEARVTVG--HGQMRERELERVMTDFYHQRFNVLVC 871

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K + 
Sbjct: 872 STIIETGIDVPTANTIIIERADNFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKLMT 927

Query: 699 L 699
            
Sbjct: 928 K 928


>gi|110634054|ref|YP_674262.1| transcription-repair coupling factor [Mesorhizobium sp. BNC1]
 gi|110285038|gb|ABG63097.1| transcription-repair coupling factor [Chelativorans sp. BNC1]
          Length = 1167

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 83/514 (16%), Positives = 172/514 (33%), Gaps = 61/514 (11%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           G+  R    ++ GV    + F +A++   +    P I +  +      +    +   P  
Sbjct: 9   GLARRNGPAIVDGVADGYEPFALARISAEIAPDGPLIFVVRDGQRLPLIAEALQFAAPGL 68

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV--SSV 278
            V    ++ D    +   P  D    +  ++         SA  +L +     VV  S+ 
Sbjct: 69  PVMTLPAW-DCLPYDRVSPGADAAARRLDAL---------SAMAALKKNPHRAVVLVSAN 118

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           + +  +   +  +    + K G+ V+ + L+  L    ++R       G + V G  +++
Sbjct: 119 AVLQRMPPAKHIAAQGFRAKPGNQVDMEALIGRLETAGFERVPTVRDMGQYAVRGGILDL 178

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           F    E+ A R+  FG+ ++ I  F   T +       + + A S  +    T++     
Sbjct: 179 FAPGWEE-ALRLDFFGDTLDSIRAFDVATQRTTGQRTEVMLQAMSEVMLTPDTVSRF--- 234

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
                  R   +E  G       L          +        +E++             
Sbjct: 235 -------RRHYIETFGAPSRDDAL-------YAAISEGRRFSGMEHWLPLFYDGLE---- 276

Query: 459 PTLFEYIPEDSLLFVDE--SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            T+F+Y+P D+ L  D         + + +      RK  L+E G  L   +  +P+  +
Sbjct: 277 -TVFDYLP-DAPLVFDHLAQEAVNERHALINDHYEARKRQLSE-GAGLGDSVPYKPIEPQ 333

Query: 517 EWNCLRPTTIVVSATPGSWEL-------EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           +   L P  I+ +A   ++         E     +               +        +
Sbjct: 334 QLY-LDPQEILAAAEARAFIQLTPFATPEAGGAKVFHAGALAGRSFAERAD--PNANVFD 390

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            V   I      G  +L+   ++  A+ L++ L E  +        V  +  +  +  L 
Sbjct: 391 HVVKHIGERRAHGKHVLIAGWSEGSADRLSQILAEHGL------GGVARVTSLGELAKLP 444

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            G+  + V    L  G + P   LV + + D  G
Sbjct: 445 KGQAGLGVLP--LETGFETP--KLVVVAEQDILG 474



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 104/273 (38%), Gaps = 44/273 (16%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 769  HVLTLSATPIPRTLQLALTGVRELSLIATPPVDRMA-VRTFISPFDPLVIRETLLRERYR 827

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       ++ E+L E+   ++V   H ++   E  +I+     GK+DVL+  
Sbjct: 828  GGQSFYVVPRISDLAEVKEFLAEQVPELKVATAHGQIAAGELDDIMNAFYDGKYDVLLST 887

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R   SKV  YA     +   
Sbjct: 888  TIVESGLDIPTANTLIVHRADMFGLAQ----LYQLRGRVGR---SKVRAYALFTLPA-NR 939

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             +  T  RR K                  +++ +D +       ++        +L  ++
Sbjct: 940  TLTPTAERRLK------------------VLQSLDALGAGFQLASHDLDIRGAGNLLGEE 981

Query: 760  GKAHLK----SLRKQMHLAADNLNFEEA-ARIR 787
               H+K     L +QM         EEA A +R
Sbjct: 982  QSGHIKEVGYELYQQML--------EEAVAELR 1006


>gi|326571030|gb|EGE21054.1| transcription-repair coupling factor [Moraxella catarrhalis BC7]
          Length = 1184

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 131/370 (35%), Gaps = 42/370 (11%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206
           + P  D P           +  K  L L + G+  +F +A   ++ +R  +V+A ++   
Sbjct: 5   FKPKLDLPT---------KANFKTTLPL-LGGADLSFWLALAAKSEERLIVVIANHQNEL 54

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM-RHSATRS 265
            QL +E            F     +  P+  +   D     +  I+E+I  + R   T  
Sbjct: 55  NQLDTELS----------FFGIDAHVFPDWEILAYDQLSVHQDIISERIALLTRMPTTGV 104

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           LL       VS+ + +  I            L +GD  +  E    L K  Y + +    
Sbjct: 105 LL-------VSTQTLMQRIAPPSWLIGQHFDLAVGDKFDIHEQRLRLTKAGYVQTENVFE 157

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR--NVETIKIYANS 383
            G F V G  ++IF +  + + +R+ +F ++IE I  F P + + +   ++  +K  A +
Sbjct: 158 PGEFAVRGSIVDIF-AVGQSLPFRLDLFDDNIETIKFFDPDSQRTLSDNDLAQLKKDAQA 216

Query: 384 HYVTPRPTLNTAMKYIKE-ELKMRLIELEKEGRLLEAQRLEQ-------RITYDLEMLET 435
              T       +   I E  L        +EG+ +  Q           R       +  
Sbjct: 217 GMNTHHAQKLPSSAKITEFRLLPAREFPLEEGKEMFRQNFASLFPNASARKIEFYNDVMA 276

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
             + Q IE Y+      +       LF Y+P+D+L+   ++               H   
Sbjct: 277 AIAPQGIEFYAPLFFELDAWMKTGNLFSYLPDDTLVVSHDNLSACHDEYYQQIQARHHSR 336

Query: 496 TLAEYGFRLP 505
               +   LP
Sbjct: 337 A---HDKSLP 343



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 7/174 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
           ++ ++ATP    L      + +  I  T              + ++   + I     +G 
Sbjct: 787 SLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLPKSDETIKEAILREILRGG 846

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + L E     R    H ++   E   ++ D    KF+VLV   +
Sbjct: 847 QVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNERELSVVMNDFYHKKFNVLVASTI 906

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K
Sbjct: 907 IETGIDVPNANTIIIHRADKFGIAQ----LHQLRGRVGRSHHQAYCYLMVPSLK 956


>gi|163753497|ref|ZP_02160621.1| transcription-repair coupling factor [Kordia algicida OT-1]
 gi|161327229|gb|EDP98554.1| transcription-repair coupling factor [Kordia algicida OT-1]
          Length = 1095

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 100/246 (40%), Gaps = 21/246 (8%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            AIA+  + +H++       G+TGS  +F +++  +    P + +  +K  AA   ++ +
Sbjct: 3   QAIAKNQEKVHAK-------GLTGSSLSFVISETYKQSDMPFLFILNDKEEAAYYLNDLE 55

Query: 215 NFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                  V ++  SY   YQ           IE+  + N  +     +   S  ++   I
Sbjct: 56  YLLNDKDVLFYPGSYRRPYQ-----------IEETDNANVLLRAEVLNRINS-RKKPSLI 103

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V    +    + + +   +  +++ + D +    +  +L +  + R D     G F V G
Sbjct: 104 VTYPDALFEKVVTRKELEKNTLKISLNDKLSIDFVNETLFEYNFNRVDFVTEPGEFSVRG 163

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++++ S   D  +R+  FG +++ +  F   T      V+ I I  N      + +  
Sbjct: 164 GIVDVY-SFSNDEPYRIEFFGEEVDSLRTFDVETQLSTEKVKKISIIPNVENKALQESRE 222

Query: 394 TAMKYI 399
           + +KYI
Sbjct: 223 SFLKYI 228



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 78/187 (41%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +  +I        P+E    R Q E + D ++   Q+G 
Sbjct: 687 TLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIETHVIRFQEETIRDAVSYEIQRGG 746

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   +       +    H +++  +  +++     G+FDVLV   +
Sbjct: 747 QVFFIHNRIENIKEVAGMIQRLVPDAKIGIGHGQMEGKKLEKLMLAFMNGEFDVLVSTTI 806

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+P    + I +A+  G     + L Q  GR  R+ N K   Y  T   S+   +
Sbjct: 807 IESGLDVPNANTIFINNANNFGL----SDLHQMRGRVGRS-NKKAFCYFITPPDSV---M 858

Query: 702 DETTRRR 708
            +  R+R
Sbjct: 859 TQDARKR 865



 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A   G ++ + V T     +  +  +E L E  I + Y++    T +R
Sbjct: 569 GKTEVAIRAAFKAVDNGKQVAILVPTTILAFQHFKTFSERLKEMPITIDYLNRFRSTKQR 628

Query: 622 IEIIRDLRLGKFDVLVGI-NLLREGLDIPECGLVAILDADKEG 663
            E+++ L  G  D+++G   L+ + +   + GL+ + +  K G
Sbjct: 629 NEVLKGLEDGSVDIVIGTHQLVNKAVKFKDLGLLIVDEEQKFG 671


>gi|167836965|ref|ZP_02463848.1| transcription-repair coupling factor [Burkholderia thailandensis
           MSMB43]
          Length = 1189

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 104/303 (34%), Gaps = 40/303 (13%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G  GS     +A+ + A +       V+  N + A +L  E + F P   V         
Sbjct: 57  GAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELRYFAPDARVRV------- 109

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESY 290
                 +P  +T      S ++ +   R +    L E     ++V + + +Y +      
Sbjct: 110 ------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFL 163

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +        G+ +++ +L + L    Y+     +  G + V G  I++FP     + +R+
Sbjct: 164 AAYTFSFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPM-GSPLPYRI 222

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F + ++ I  F P T + +  V  +++     +              +   + R  E 
Sbjct: 223 DLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA--------RTAFRSRWRET 274

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +              +   + +        IE Y          +   TLF Y+PE + 
Sbjct: 275 FEGD---------PSRSPIYKDIGNGVPSAGIEYYLPLFF-----DETATLFHYLPERAQ 320

Query: 471 LFV 473
           L  
Sbjct: 321 LVF 323



 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 78/198 (39%), Gaps = 20/198 (10%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +RS    V  + + +    ++
Sbjct: 786 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRSEDESV--IREAMLRELKR 843

Query: 582 GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E+    L   + E  I +   H ++   E   ++RD    + +VL+
Sbjct: 844 GGQVYFLHNEVETIENRRAMLEALVPEARIAIA--HGQMHERELERVMRDFVAQRANVLL 901

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +++
Sbjct: 902 CTTIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQAL 957

Query: 698 QLAIDETTRRRE--KQLE 713
                +  RR E  +Q+E
Sbjct: 958 TK---QAQRRLEAIQQME 972


>gi|239833942|ref|ZP_04682270.1| transcription-repair coupling factor [Ochrobactrum intermedium LMG
           3301]
 gi|239822005|gb|EEQ93574.1| transcription-repair coupling factor [Ochrobactrum intermedium LMG
           3301]
          Length = 1171

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 78/537 (14%), Positives = 180/537 (33%), Gaps = 80/537 (14%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
            +  ++ GV    + F + +++E +    P + +  +    A L        P   V + 
Sbjct: 18  NRHIVIDGVADGYEAFCLIRLVEEIGERGPIMYIVRDGQRIADLEQVLSFVAPDMPVLHL 77

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQI--DRMRHSATRSLLERNDCIVVSSVSCIYG 283
            ++ D    +   P  D    + +++       +  H A          I+ ++ + +  
Sbjct: 78  PAW-DCLPYDRVSPGADAAARRLTALGALAALRKAPHPAI---------ILTTANAVLQK 127

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +    + ++ ++  + G+ ++  +L S L +  ++R       G F V G  ++++    
Sbjct: 128 LPPQAAIAEQVISARPGNQLDMNDLASRLERNGFERVSTVRDIGEFAVRGGILDLYAPGA 187

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E+   R+  FG+ +E I  F P + +     +   +   S        ++          
Sbjct: 188 EE-PLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMSEITLSPDMISRF-------- 238

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
             R   +   G         QR     + +        +E++      R       T+F+
Sbjct: 239 --RKNYVAMFGAP-------QRDDALYQAISEGRRFAGMEHWLPLFYDRL-----DTVFD 284

Query: 464 YIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP 523
           +  +D  +  D  H+    ++  +                     D  P +      ++P
Sbjct: 285 H-ADDMPVVFD--HLVHEALTERHTMVVDHYEARLRQAEGKEPGSDAVPYKP-----VKP 336

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD---------------PPVEIRSAR--T 566
            T+ +  TP   E +  +   +   + P G  +                  E R+A    
Sbjct: 337 ETLYL--TPSEVE-KHAEAGGMRIDLTPFGAPEVTGRTIVHADVHKGRSFAEERAATDVN 393

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
             E V   I      G ++L+   T+   + L + L E  +       ++++++R+  ++
Sbjct: 394 LFEAVVKHIAELRASGKKVLVAAWTEGSLDRLLQVLDEHGLE------KIESVDRLSTVK 447

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            L   K    V   +L          LV + + D  G       LI+   R  R+ +
Sbjct: 448 ALSRDK----VTAAVLAVESGFDAGDLVIVAEQDILG-----DRLIRRSKRRKRDQD 495



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 93/260 (35%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 775  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPLVIRETLLRERYR 833

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +            ++ E+L      ++V   H ++      +I+     G++DVL+  
Sbjct: 834  GGQSFYVCPRISDLGEIEEFLKTHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 893

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 894  TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 946

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 947  -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 987

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 988  QSGHIKEVGFELYQQMLEEA 1007


>gi|296113202|ref|YP_003627140.1| transcription-repair coupling factor [Moraxella catarrhalis RH4]
 gi|295920896|gb|ADG61247.1| transcription-repair coupling factor [Moraxella catarrhalis RH4]
          Length = 1184

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 131/370 (35%), Gaps = 42/370 (11%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206
           + P  D P           +  K  L L + G+  +F +A   ++ +R  +++A ++   
Sbjct: 5   FKPKLDLPT---------KANFKTTLPL-LGGADLSFWLALAAKSEERLIVMIANHQNEL 54

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM-RHSATRS 265
            QL +E            F     +  P+  +   D     +  I+E+I  + R   T  
Sbjct: 55  NQLDTELS----------FFGIDAHVFPDWEILAYDQLSVHQDIISERIALLTRMPTTGV 104

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           LL       VS+ + +  I            L +GD  +  E    L K  Y + +    
Sbjct: 105 LL-------VSTQTLMQRIAPPSWLIGQHFDLAVGDKFDIHEQRLRLTKAGYVQTENVFE 157

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR--NVETIKIYANS 383
            G F V G  ++IF +  + + +R+ +F ++IE I  F P + + +   ++  +K  A +
Sbjct: 158 PGEFAVRGSIVDIF-AVGQSLPFRLDLFDDNIETIKFFDPDSQRTLSDNDLAQLKKDAQA 216

Query: 384 HYVTPRPTLNTAMKYIKE-ELKMRLIELEKEGRLLEAQRLEQ-------RITYDLEMLET 435
              T       +   I E  L        +EG+ +  Q           R       +  
Sbjct: 217 GMNTHHAQKLPSSAKITEFRLLPAREFPLEEGKEMFRQNFASLFPNASARKIEFYNDVMA 276

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
             + Q IE Y+      +       LF Y+P+D+L+   ++               H   
Sbjct: 277 AIAPQGIEFYAPLFFELDAWMKTGNLFSYLPDDTLVVSHDNLSACHDEYYQQIQARHHSR 336

Query: 496 TLAEYGFRLP 505
               +   LP
Sbjct: 337 A---HDKSLP 343



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 7/174 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
           ++ ++ATP    L      + +  I  T              + ++   + I     +G 
Sbjct: 787 SLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLPKSDETIKEAILREILRGG 846

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + L E     R    H ++   E   ++ D    KF+VLV   +
Sbjct: 847 QVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNERELSVVMNDFYHKKFNVLVASTI 906

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K
Sbjct: 907 IETGIDVPNANTIIIHRADKFGIAQ----LHQLRGRVGRSHHQAYCYLMVPSLK 956


>gi|86357714|ref|YP_469606.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
           CFN 42]
 gi|86281816|gb|ABC90879.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
           CFN 42]
          Length = 1167

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 82/505 (16%), Positives = 151/505 (29%), Gaps = 94/505 (18%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
               P   +  +    A L        P   V               +P  D       S
Sbjct: 36  RAGEPVAYVMSDGHRMADLEQMLGFVAPDIPVLT-------------LPAWDCLPYDRVS 82

Query: 251 INEQIDRMRHSATRSLLERND-----CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
            +      R +A   L+          ++V++ + +  +   +    +    + G+ +  
Sbjct: 83  PSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQKVAPHDVIESLSFSARPGNQLRM 142

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
            +L   L +  + R       G + V G  +++F    E+   R+  FG+ +E I  F P
Sbjct: 143 DDLAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGSEE-PVRLDFFGDTLESIRSFDP 201

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
            + +    V ++ +   S       T++            R   L   G       L   
Sbjct: 202 ASQRTTGQVRSLDLNPMSEVTLTPDTISRF----------RKNYLSAFGATTRDDALYLA 251

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
           ++              +E++          E   T+F+Y+     +  D         + 
Sbjct: 252 VS-------EGRRYPGMEHWLPLFY-----EKLDTVFDYL-SGFRVVTD--------HTV 290

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ---- 541
               +   K  L  Y  RL S     P +      +   T     TPG   L+       
Sbjct: 291 REAAEERSKLVLDYYDARLNSGQ---PAK----GQMAQGTPYKPVTPGQLYLDSKHFTKT 343

Query: 542 -----GIIVEQIIRPTGLVDPPVEIRSARTQ------------------VEDVYDEINLA 578
                 I +       G     + + + + Q                   + V   I   
Sbjct: 344 LDALGAIRISPFNEHEGEARRVINVDARQGQRWARSNAEGGGDAERVNIFDIVVKHIADR 403

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
              G ++L+T  T+   E L + L E  +       +VK +E ++ IR L  G+    V 
Sbjct: 404 RAAGAKVLVTAWTEGSLERLLQVLNEHGLE------KVKPVEALKDIRSLEKGEAAAAVL 457

Query: 639 INLLREGLDIPECGLVAILDADKEG 663
              L  G +  E  LV I + D  G
Sbjct: 458 N--LESGFEAGE--LVVIGEQDILG 478



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 102/280 (36%), Gaps = 46/280 (16%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 773  HVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMA-VRTFISPFDSLVIRETLMREHYR 831

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +            D+  +L      ++V   H ++   E  +I+     G++DVL+  
Sbjct: 832  GGQSFYVCPRLADLADVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLST 891

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLD+P    + +  AD  G  +    L Q  GR  R+      L+   + K    
Sbjct: 892  TIVESGLDVPTANTLIVHRADMFGLAQ----LYQLRGRVGRSKVRAFALFTLPVNK---- 943

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             +  T  RR K                  +++ +D +       ++        +L  ++
Sbjct: 944  VLTATAERRLK------------------VLQSLDTLGAGFQLASHDLDIRGAGNLLGEE 985

Query: 760  GKAHLK----SLRKQMHLAADNLNFEEA-ARIR--DEIKR 792
               H+K     L +QM         EEA A ++  DEI  
Sbjct: 986  QSGHIKEVGFELYQQML--------EEAVAEVKGVDEIHD 1017


>gi|283458570|ref|YP_003363203.1| transcription-repair coupling factor [Rothia mucilaginosa DY-18]
 gi|283134618|dbj|BAI65383.1| transcription-repair coupling factor [Rothia mucilaginosa DY-18]
          Length = 1330

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 101/652 (15%), Positives = 207/652 (31%), Gaps = 98/652 (15%)

Query: 55  KHRKNAAKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQT-MTPSVQALARLIQSD 113
           + +K   ++    Q   T  K     +S+  M + +T     +  +TP+           
Sbjct: 13  QPKKPTKEKCHKKQSRPTIEKPRTSPKSAHKMPQNKTPGHPTRHHLTPT--------TRR 64

Query: 114 NPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHP---SGDQP---AAIAQLLKGIHSR 167
           +P            S    + ++  T   ++   HP   + +Q    AAI        + 
Sbjct: 65  HPPPAKPPEPRTADSGEPVSTTRKATAQPLEAPLHPLLKTLNQLSNWAAIRTAASAQPTE 124

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPA-----IVMAPNKILAAQLYSEFKNFFPHNAV 222
              + L+G         +A +  A++        +++AP    A  L +  +++ P   +
Sbjct: 125 RSARTLIGAVAGTHAALIADISTAVRDTTAEALSLIIAPTDRQAEDLAAALRSYLPAADI 184

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
             F ++ +    E   PR+DT   +       +  +R  A     ++   +V++ V  + 
Sbjct: 185 ALFPAW-ETLPHERLSPRSDTVGRR-------LQVLR--AMTGDADKRPQVVIAPVRAVI 234

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
                       V L  G+    K+++  L    Y R D+   RG + V G  I++FP  
Sbjct: 235 QPIVTGIEKLEPVHLVRGEEYPFKDVVRGLNDAAYSRVDLVAKRGEYAVRGGIIDVFPP- 293

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKI---RNVETIKIYANSHYVTPRPTLNTAMKYI 399
                 R+  FG++++E+  F     + +     +  + +      +     ++ A   +
Sbjct: 294 TATTPVRLEFFGDELDEMRHFSVADQRTLSGGEELTELTLLPCRELLITPEVMSRA-ARL 352

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
           K +       L                    E +      + +E+ +  L      E   
Sbjct: 353 KADYPAAAAML--------------------EKIAGGIYVEGMESLTPLLI-----ESMN 387

Query: 460 TLFEYIPEDSLLFVDES---HVTIPQISGMYRGDFHR-----------------KATLAE 499
           TL E +P  S++   E          +                           +  +++
Sbjct: 388 TLTELLPAGSMIINVEPERVRARAEDLVATNEEFLAAAWDTSAEADAVAPIDLGQLRMSD 447

Query: 500 YGFRLPSCMDNRPL--RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR---PTGL 554
            GFR       + L  +   W      T +V  T     LE   G +  Q I      G+
Sbjct: 448 SGFRTIDQTTAQALEAKLSWWEI----TELV--TDADL-LEDAAGALQNQNIADAIEDGI 500

Query: 555 VDPPVEIRSA---RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
               V    A      VE +  ++    +Q   +L     +   + L + L+        
Sbjct: 501 DTYTVNATPATAFNGSVERMLSQVGDLIRQQWTVLALTNGRGSTDRLID-LFHSGEGAPA 559

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           + +  +T    +    L  G  +V         G  + E  L    +A+  G
Sbjct: 560 VPAARRTSLEADPAGKLEHGIVEV--CEAPASAGFLVEEAKLAVFTEAELLG 609



 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 19/230 (8%)

Query: 75  KGEFQSQSSISMSE-KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINN 133
            GE  S S +  S+  +T+  + + +      L +L  +       G  +     W    
Sbjct: 709 GGENPSLSKMGGSDWAKTKSRARKAVKEIAADLVKLYSARQ--ASRGHAFAADTPWQREL 766

Query: 134 HSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSR-EKVQLLLGVTGSGKTFT---MAKVI 189
                        Y+ + DQ  AI ++ + +       +L+ G  G GKT      A   
Sbjct: 767 EESF--------PYNETPDQLTAIHEVKEDMEKEIPMDRLISGDVGFGKTEVAVRAAFKA 818

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
               +   V+ P  +LA Q Y  F   F    V+  V        E      +       
Sbjct: 819 VQDGKQVAVLVPTTLLAQQHYETFSERFSGFPVKIRVLSRFQKAKETRQITEEIASGAVD 878

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
            +   I   R   + S++ ++  +V+      +G+   E   QM   + +
Sbjct: 879 VV---IGTHRIL-SDSVVFKDLGLVIIDEEQRFGVEHKEKLKQMRTNVDV 924


>gi|114327500|ref|YP_744657.1| transcription-repair coupling factor [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315674|gb|ABI61734.1| transcription-repair coupling factor [Granulibacter bethesdensis
           CGDNIH1]
          Length = 1149

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 145/447 (32%), Gaps = 53/447 (11%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
            + G         + +  +      + +A +    A+L    + F P   V  F      
Sbjct: 3   TVYGAPEGWDAVLINRRRQETGGVIVHVARDDARVARLAEALRFFAPKVEVLTF------ 56

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE---RNDCIVVSSVSCIYGIGSVE 288
                  P  D       S N ++   R +    L E       ++ +  + +  +    
Sbjct: 57  -------PAWDCLPYDRVSPNPELVSERVATLARLAEMPDSPRIVLTTFNALVQRVPPRG 109

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            +    + L +GD  +  E+   L +  Y R    +  G + + G  ++IFPS  E    
Sbjct: 110 QFHGTGLDLGVGDLADPDEMARFLDQHGYVRAGTVMEAGEYALRGGIVDIFPS-GEAEPI 168

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+ +FG+ IE I  F P T +    VE + +   S     + ++             R  
Sbjct: 169 RLDLFGDQIESIRRFDPTTQRSGEAVERLVLRPVSEIPLDKDSITRF----------RTA 218

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
             E  G+      +   I+              +E+++         E   TL +Y+P  
Sbjct: 219 WREVFGQDAAQDPIYLSIS-------DGRRHAGMEHWAPLFH-----ESMETLLDYVP-G 265

Query: 469 SLLFVDESHVTIPQ--ISGMYRGDFHRKATLAEYG--FRLPSCMDNRPLRFEEWNCLRP- 523
           +++ +D     + Q  +  +      R A + E    +R  S  +   L   EW+     
Sbjct: 266 AVVSLDHQGEDVLQSRLEMIEDHFHARHAPVREGETPYRALSP-ERLYLTRAEWDAAINP 324

Query: 524 -TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
              ++ S        +   G         +G +             + + D     A+ G
Sbjct: 325 RQPVIFSVFDRPDGAQGVDGGGR------SGALFAKTAATEGGNSFQQLRDASQQWAKDG 378

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRV 609
            R+++   ++   E L   L E  I+ 
Sbjct: 379 RRLIVAAWSRGSRERLMHLLRENGIKA 405



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 66/184 (35%), Gaps = 11/184 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
             + ++ATP    L+     + E  I  T  VD       I    + V  V + I     
Sbjct: 743 HVLTLTATPIPRTLQLSLSGVREMSIIATPPVDRLAVRTFIMPFDSVV--VREAIQRERF 800

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G ++            + E L E     + +  H ++   E   ++ +   GK D+L+ 
Sbjct: 801 RGGQVFCVCPRLEDLGRMAERLAEIVPEAKLITAHGQLAPTELERVMTEFGDGKHDILLA 860

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            N++  GLD+P    + I  AD  G  +    L Q  GR  R                + 
Sbjct: 861 TNIVESGLDMPAVNTIIIHRADMFGLGQ----LYQLRGRVGRGKQRGYAYLTWPQAHRLS 916

Query: 699 LAID 702
           +A +
Sbjct: 917 VAAE 920


>gi|326567865|gb|EGE17966.1| transcription-repair coupling factor [Moraxella catarrhalis
           12P80B1]
          Length = 1184

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 131/370 (35%), Gaps = 42/370 (11%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206
           + P  D P           +  K  L L + G+  +F +A   ++ +R  +++A ++   
Sbjct: 5   FKPKLDLPT---------KANFKTTLPL-LGGADLSFWLALAAKSEERLIVMIANHQNEL 54

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM-RHSATRS 265
            QL +E            F     +  P+  +   D     +  I+E+I  + R   T  
Sbjct: 55  NQLDTELS----------FFGIDAHVFPDWEILAYDQLSVHQDIISERIALLTRMPTTGV 104

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           LL       VS+ + +  I            L +GD  +  E    L K  Y + +    
Sbjct: 105 LL-------VSTQTLMQRIAPPSWLIGQHFDLAVGDKFDIHEQRLRLTKAGYVQTENVFE 157

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR--NVETIKIYANS 383
            G F V G  ++IF +  + + +R+ +F ++IE I  F P + + +   ++  +K  A +
Sbjct: 158 PGEFAVRGSIVDIF-AVGQSLPFRLDLFDDNIETIKFFDPDSQRTLSDNDLAQLKKDAQA 216

Query: 384 HYVTPRPTLNTAMKYIKE-ELKMRLIELEKEGRLLEAQRLEQ-------RITYDLEMLET 435
              T       +   I E  L        +EG+ +  Q           R       +  
Sbjct: 217 GMNTHHAQKLPSSAKITEFRLLPAREFPLEEGKEMFRQNFASLFPNASARKIEFYNDVMA 276

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
             + Q IE Y+      +       LF Y+P+D+L+   ++               H   
Sbjct: 277 AIAPQGIEFYAPLFFELDAWMKTGNLFSYLPDDTLVVSHDNLSACHDEYYQQIQARHHSR 336

Query: 496 TLAEYGFRLP 505
               +   LP
Sbjct: 337 A---HDKSLP 343



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 7/174 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
           ++ ++ATP    L      + +  I  T              + ++   + I     +G 
Sbjct: 787 SLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLPKSDETIKEAILREILRGG 846

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + L E     R    H ++   E   ++ D    KF+VLV   +
Sbjct: 847 QVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNERELSVVMNDFYHKKFNVLVASTI 906

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K
Sbjct: 907 IETGIDVPNANTIIIHRADKFGIAQ----LHQLRGRVGRSHHQAYCYLMVPSLK 956


>gi|325523534|gb|EGD01843.1| transcription-repair coupling factor [Burkholderia sp. TJI49]
          Length = 326

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 107/331 (32%), Gaps = 48/331 (14%)

Query: 175 GVTGSGKTFTMAKVIE--AMQRPAI-VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G  GS     +A+ +       P + V+  N + A +L  E + F P   V         
Sbjct: 23  GAHGSADALAIARYLADNRHDVPLLAVICANAVDAQRLSQEIRYFSPDARVRL------- 75

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESY 290
                 +P  +T      S ++ +   R +    L E     ++V + + +Y +      
Sbjct: 76  ------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFM 129

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +        G+ +++ +L + L    Y+     +  G + V G  I++FP     + +R+
Sbjct: 130 AAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPM-GSPLPYRI 188

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F + ++ I  F P T + +  V  +++     +              +   + R  E 
Sbjct: 189 DLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA--------RTAFRSRWRET 240

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +                  + +        IE Y          +   TLF Y+P+++ 
Sbjct: 241 FEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----DETATLFHYLPQNAH 286

Query: 471 LFVDESHVT--------IPQISGMYRGDFHR 493
           L                  Q       D  R
Sbjct: 287 LVFTGDLDASIRRFTADTRQRHAFLSHDRER 317


>gi|238026956|ref|YP_002911187.1| transcription-repair coupling factor [Burkholderia glumae BGR1]
 gi|237876150|gb|ACR28483.1| Transcription-repair coupling factor [Burkholderia glumae BGR1]
          Length = 1157

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 75/475 (15%), Positives = 149/475 (31%), Gaps = 82/475 (17%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA---IVMAP 201
             + PS   P A+      + + ++     G  GS +   +A+ + A +       V+  
Sbjct: 5   ASFPPS---PVAL------VKAGQRFAFD-GAPGSAEALAIARYLAAHRAQVPLLAVICA 54

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           N   A +L  E   F P   V               +P  +T      S ++ +   R +
Sbjct: 55  NPADAQRLSQEIGFFAPEARVRL-------------LPDWETLPYDTFSPHQDLVSERLA 101

Query: 262 ATRSLLERND-CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
               L E     ++V + + +Y +      +        G+ +++ +  + L    Y+  
Sbjct: 102 TLHDLGEGRCDILLVPATTALYRMPPASFLAAYTFAFTQGERLDESKFKAQLTLAGYEHV 161

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
              +  G + V G  I++FP     + +R+ +F + I+ I  F P T + +  V  +++ 
Sbjct: 162 SQVVRPGEYCVRGSLIDLFPM-GSPLPYRIDLFDDQIDSIRAFDPDTQRSLYPVRDVRLL 220

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD------LEMLE 434
               +                         ++  R     R  +    D         + 
Sbjct: 221 PGREFP-----------------------FDEAARTAFRSRWRESFEGDPSRAPIYRDIG 257

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
                  IE Y          +   TLF Y+PE + L       T       +  D  ++
Sbjct: 258 NGVPSAGIEYYLPLFF-----DDTATLFHYLPEHAHLVFTGDLDT---AIRRFTADTKQR 309

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
            T   +    P               L P  + +S     + L +    +V       G 
Sbjct: 310 YTFLSHDRERP--------------ILEPQRLFLS-DDDFYTLAKPFARVVLPAQAAGGW 354

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIR 608
             P   + +   Q +D         Q    R+L TV +    E + +   E  ++
Sbjct: 355 ATPLPPL-ALERQADDPLASFRRYLQTTPNRVLFTVESAGRRETIAQLFAEHGLK 408



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 24/150 (16%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            QV  +++E+     +          K M E L     E  I +   H ++   E   ++
Sbjct: 813 GQVYFLHNEVETIENR----------KTMLEALV---PEARIAIA--HGQMHERELERVM 857

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           R+    + +VL+   ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +  
Sbjct: 858 REFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQA 913

Query: 686 VILYADTITKSIQLAIDETTRRRE--KQLE 713
                    +++     +  RR E  +Q+E
Sbjct: 914 YAYLLVHDPQALTK---QAQRRLEAIQQME 940


>gi|37728037|gb|AAO43498.1| transcription repair coupling factor [Rhizobium etli]
          Length = 1114

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 82/505 (16%), Positives = 151/505 (29%), Gaps = 94/505 (18%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
               P   +  +    A L        P   V               +P  D       S
Sbjct: 36  RAGEPVAYVMSDGHRMADLEQMLGFVAPDIPVLT-------------LPAWDCLPYDRVS 82

Query: 251 INEQIDRMRHSATRSLLERND-----CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
            +      R +A   L+          ++V++ + +  +   +    +    + G+ +  
Sbjct: 83  PSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQKVAPHDVIESLSFSARPGNQLRM 142

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
            +L   L +  + R       G + V G  +++F    E+   R+  FG+ +E I  F P
Sbjct: 143 DDLAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGSEE-PVRLDFFGDTLESIRSFDP 201

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
            + +    V ++ +   S       T++            R   L   G       L   
Sbjct: 202 ASQRTTGQVRSLDLNPMSEVTLTPDTISRF----------RKNYLSAFGATTRDDALYLA 251

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
           ++              +E++          E   T+F+Y+     +  D         + 
Sbjct: 252 VS-------EGRRYPGMEHWLPLFY-----EKLDTVFDYL-SGFRVVTD--------HTV 290

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ---- 541
               +   K  L  Y  RL S     P +      +   T     TPG   L+       
Sbjct: 291 REAAEERSKLVLDYYDARLNSGQ---PAK----GQMAQGTPYKPVTPGQLYLDSKHFTKT 343

Query: 542 -----GIIVEQIIRPTGLVDPPVEIRSARTQ------------------VEDVYDEINLA 578
                 I +       G     + + + + Q                   + V   I   
Sbjct: 344 LDALGAIRISPFNEHEGEARRVINVDARQGQRWARSNAEGGGDAERVNIFDIVVKHIADR 403

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
              G ++L+T  T+   E L + L E  +       +VK +E ++ IR L  G+    V 
Sbjct: 404 RAAGAKVLVTAWTEGSLERLLQVLNEHGLE------KVKPVEALKDIRSLEKGEAAAAVL 457

Query: 639 INLLREGLDIPECGLVAILDADKEG 663
              L  G +  E  LV I + D  G
Sbjct: 458 N--LESGFEAGE--LVVIGEQDILG 478



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 98/281 (34%), Gaps = 48/281 (17%)

Query: 524  TTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
              + +SATP    L+     + E       P   +     I    + V  + + +     
Sbjct: 773  HVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMALRTFISPFDSLV--IRETLMREHY 830

Query: 581  QGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +G +            D+  +L      ++V   H ++   E  +I+     G++DVL+ 
Sbjct: 831  RGGQSFYVCPRLADLADVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLS 890

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  GLD+P    + +  AD  G  +    L Q  GR  R+      L+   + K   
Sbjct: 891  TTIVESGLDVPTANTLIVHRADMFGLAQ----LYQLRGRVGRSKVRAFALFTLPVNK--- 943

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
              +  T  RR K                  +++ +D +       ++        +L  +
Sbjct: 944  -VLTATAERRLK------------------VLQSLDTLGAGFQLASHDLDIRGAGNLLGE 984

Query: 759  KGKAHLK----SLRKQMHLAADNLNFEEA-ARIR--DEIKR 792
            +   H+K     L +QM         EEA A ++  DEI  
Sbjct: 985  EQSGHIKEVGFELYQQML--------EEAVAEVKGVDEIHD 1017


>gi|326570293|gb|EGE20338.1| transcription-repair coupling factor [Moraxella catarrhalis BC8]
          Length = 1184

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 131/370 (35%), Gaps = 42/370 (11%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206
           + P  D P           +  K  L L + G+  +F +A   ++ +R  +++A ++   
Sbjct: 5   FKPKLDLPT---------KANFKTTLPL-LGGADLSFWLALAAKSEERLIVMIANHQNEL 54

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM-RHSATRS 265
            QL +E            F     +  P+  +   D     +  I+E+I  + R   T  
Sbjct: 55  NQLDTELS----------FFGIDAHVFPDWEILAYDQLSVHQDIISERIALLTRMPTTGV 104

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           LL       VS+ + +  I            L +GD  +  E    L K  Y + +    
Sbjct: 105 LL-------VSTQTLMQRIAPPSWLIGQHFDLAVGDKFDIHEQRLRLTKAGYVQTENVFE 157

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR--NVETIKIYANS 383
            G F V G  ++IF +  + + +R+ +F ++IE I  F P + + +   ++  +K  A +
Sbjct: 158 PGEFAVRGSIVDIF-AVGQSLPFRLDLFDDNIETIKFFDPDSQRTLSDNDLAQLKKDAQA 216

Query: 384 HYVTPRPTLNTAMKYIKE-ELKMRLIELEKEGRLLEAQRLEQ-------RITYDLEMLET 435
              T       +   I E  L        +EG+ +  Q           R       +  
Sbjct: 217 GMNTHHAQKLPSSAKITEFRLLPAREFPLEEGKEMFRQNFASLFPNASARKIEFYNDVMA 276

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
             + Q IE Y+      +       LF Y+P+D+L+   ++               H   
Sbjct: 277 AIAPQGIEFYAPLFFELDAWMKTGNLFSYLPDDTLVVSHDNLSACHDEYYQQIQARHHSR 336

Query: 496 TLAEYGFRLP 505
               +   LP
Sbjct: 337 A---HDKSLP 343



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 7/174 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
           ++ ++ATP    L      + +  I  T              + ++   + I     +G 
Sbjct: 787 SLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLPKSDETIKEAILREILRGG 846

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + L E     R    H ++   E   ++ D    KF+VLV   +
Sbjct: 847 QVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNERELSVVMNDFYHKKFNVLVASTI 906

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K
Sbjct: 907 IETGIDVPNANTIIIHRADKFGIAQ----LHQLRGRVGRSHHQAYCYLMVPSLK 956


>gi|326575775|gb|EGE25698.1| transcription-repair coupling factor [Moraxella catarrhalis CO72]
          Length = 1184

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 131/370 (35%), Gaps = 42/370 (11%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206
           + P  D P           +  K  L L + G+  +F +A   ++ +R  +++A ++   
Sbjct: 5   FKPKLDLPT---------KANFKTTLPL-LGGADLSFWLALAAKSEERLIVMIANHQNEL 54

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM-RHSATRS 265
            QL +E            F     +  P+  +   D     +  I+E+I  + R   T  
Sbjct: 55  NQLDTELS----------FFGIDAHVFPDWEILAYDQLSVHQDIISERIALLTRMPTTGV 104

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           LL       VS+ + +  I            L +GD  +  E    L K  Y + +    
Sbjct: 105 LL-------VSTQTLMQRIAPPSWLIGQHFDLAVGDKFDIHEQRLRLTKAGYVQTENVFE 157

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR--NVETIKIYANS 383
            G F V G  ++IF +  + + +R+ +F ++IE I  F P + + +   ++  +K  A +
Sbjct: 158 PGEFAVRGSIVDIF-AVGQSLPFRLDLFDDNIETIKFFDPDSQRTLSDNDLAQLKKDAQA 216

Query: 384 HYVTPRPTLNTAMKYIKE-ELKMRLIELEKEGRLLEAQRLEQ-------RITYDLEMLET 435
              T       +   I E  L        +EG+ +  Q           R       +  
Sbjct: 217 GMNTHHAQKLPSSAKITEFRLLPAREFPLEEGKEMFRQNFASLFPNASARKIEFYNDVMA 276

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
             + Q IE Y+      +       LF Y+P+D+L+   ++               H   
Sbjct: 277 AIAPQGIEFYAPLFFELDAWMKTGNLFSYLPDDTLVVSHDNLSACHDEYYQQIQARHHSR 336

Query: 496 TLAEYGFRLP 505
               +   LP
Sbjct: 337 A---HDKSLP 343



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 7/174 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
           ++ ++ATP    L      + +  I  T              + ++   + I     +G 
Sbjct: 787 SLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLPKSDETIKEAILREILRGG 846

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + L E     R    H ++   E   ++ D    KF+VLV   +
Sbjct: 847 QVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNERELSVVMNDFYHKKFNVLVASTI 906

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K
Sbjct: 907 IETGIDVPNANTIIIHRADKFGIAQ----LHQLRGRVGRSHHQAYCYLMVPSLK 956


>gi|332291666|ref|YP_004430275.1| transcription-repair coupling factor [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169752|gb|AEE19007.1| transcription-repair coupling factor [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 1137

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 97/248 (39%), Gaps = 14/248 (5%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q   + + +       K     G+ GS  +FT++   E+ + P +++  +K  AA   ++
Sbjct: 15  QLQKLREAISHSQENNKNIQAKGLVGSALSFTISSAFESAESPFLIILNDKEEAAYFLND 74

Query: 213 FKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
            +       V ++  SY   YQ           IE+  + N  +     +   S   +  
Sbjct: 75  LEQLRKEANVLFYPGSYRRPYQ-----------IEEIDNANILLRAEVLNRINS-RRKPA 122

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V    +    + + +   +  +++ + D +    +   L + ++KR D     G F V
Sbjct: 123 LLVTYPDALFEKVVTRKELDRQTLKIAVSDQLSLDFVNEMLFEYKFKRVDFVTEPGEFSV 182

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  +++F S   D  +R+  FG++++ I  F   +      V+ I +  N         
Sbjct: 183 RGGIVDVF-SFSHDEPYRIEFFGDEVDSIRTFDVESQLSTGQVKKISVMPNVENKALTEV 241

Query: 392 LNTAMKYI 399
             + ++YI
Sbjct: 242 RQSFLEYI 249



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 12/190 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +     T   +  P+E    R   E + D +    Q+G 
Sbjct: 710 TLTLTATPIPRTLQFSLMAARDLSTINTAPPNRYPIESNVVRFSEEVIRDAVQYEIQRGG 769

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   +       +    H +++       +     G+FDVLV   +
Sbjct: 770 QVFFIHNRIENIKEVAGLIQRLVPDAKVGIGHGQMEGKTLEAKMLSFMNGEFDVLVSTTI 829

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+P    + I +A+  G     + L Q  GR  R+       +      ++    
Sbjct: 830 IESGLDVPNANTIFINNANNFGL----SDLHQMRGRVGRSNKKAFCYFITPPYSAM---- 881

Query: 702 DETTRRREKQ 711
                R+  Q
Sbjct: 882 -TDDARKRIQ 890


>gi|326559271|gb|EGE09699.1| transcription-repair coupling factor [Moraxella catarrhalis
           103P14B1]
 gi|326560196|gb|EGE10584.1| transcription-repair coupling factor [Moraxella catarrhalis 7169]
 gi|326564935|gb|EGE15137.1| transcription-repair coupling factor [Moraxella catarrhalis
           46P47B1]
 gi|326573327|gb|EGE23295.1| transcription-repair coupling factor [Moraxella catarrhalis
           101P30B1]
 gi|326576857|gb|EGE26763.1| transcription-repair coupling factor [Moraxella catarrhalis O35E]
          Length = 1184

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 69/370 (18%), Positives = 130/370 (35%), Gaps = 42/370 (11%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206
           + P  D P           +  K  L L + G+  +F +A   ++ +R  +++A ++   
Sbjct: 5   FKPKLDLPT---------KANFKTTLPL-LGGADLSFWLALAAKSEERLIVMIANHQNEL 54

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM-RHSATRS 265
            QL +E            F     +  P+  +   D     +  I+E+I  + R   T  
Sbjct: 55  NQLDTELS----------FFGIDAHVFPDWEILAYDQLSVHQDIISERIALLTRMPTTGV 104

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           LL       VS+ + +  I            L +GD  +  E    L K  Y + +    
Sbjct: 105 LL-------VSTQTLMQRIAPPSWLIGQHFDLAVGDKFDIHEQRLRLTKAGYVQTENVFE 157

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR--NVETIKIYANS 383
            G F V G  ++IF +  + + +R+ +F ++IE I  F P + + +   ++  +K  A +
Sbjct: 158 PGEFAVRGSIVDIF-AVGQSLPFRLDLFDDNIETIKFFDPDSQRTLSDNDLAQLKKDAQA 216

Query: 384 HYVTPRPTLNTAMKYIKE-ELKMRLIELEKEGRLLEAQRLEQ-------RITYDLEMLET 435
              T       +   I E  L        + G+ +  Q           R       +  
Sbjct: 217 GMNTHHAQKLPSSAKITEFRLLPAREFPLEAGKEMFRQNFASLFPNASARKIEFYNDVMA 276

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
             + Q IE Y+      +       LF Y+P+D+L+   ++               H   
Sbjct: 277 AIAPQGIEFYAPLFFELDAWMKTGNLFSYLPDDTLVVSHDNLSACHDEYYQQIQARHHSR 336

Query: 496 TLAEYGFRLP 505
               +   LP
Sbjct: 337 A---HDKSLP 343



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 7/174 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
           ++ ++ATP    L      + +  I  T              + ++   + I     +G 
Sbjct: 787 SLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLPKSDETIKEAILREILRGG 846

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + L E     R    H ++   E   ++ D    KF+VLV   +
Sbjct: 847 QVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNERELSVVMNDFYHKKFNVLVASTI 906

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K
Sbjct: 907 IETGIDVPNANTIIIHRADKFGIAQ----LHQLRGRVGRSHHQAYCYLMVPSLK 956


>gi|326566625|gb|EGE16767.1| transcription-repair coupling factor [Moraxella catarrhalis BC1]
          Length = 1184

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 69/370 (18%), Positives = 130/370 (35%), Gaps = 42/370 (11%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206
           + P  D P           +  K  L L + G+  +F +A   ++ +R  +++A ++   
Sbjct: 5   FKPKLDLPT---------KANFKTTLPL-LGGADLSFWLALAAKSEERLIVMIANHQNEL 54

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM-RHSATRS 265
            QL +E            F     +  P+  +   D     +  I+E+I  + R   T  
Sbjct: 55  NQLDTELS----------FFGIDAHVFPDWEILAYDQLSVHQDIISERIALLTRMPTTGV 104

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           LL       VS+ + +  I            L +GD  +  E    L K  Y + +    
Sbjct: 105 LL-------VSTQTLMQRIAPPSWLIGQHFDLAVGDKFDIHEQRLRLTKAGYVQTENVFE 157

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR--NVETIKIYANS 383
            G F V G  ++IF +  + + +R+ +F ++IE I  F P + + +   ++  +K  A +
Sbjct: 158 PGEFAVRGSIVDIF-AVGQSLPFRLDLFDDNIETIKFFDPDSQRTLSDNDLAQLKKDAQA 216

Query: 384 HYVTPRPTLNTAMKYIKE-ELKMRLIELEKEGRLLEAQRLEQ-------RITYDLEMLET 435
              T       +   I E  L        + G+ +  Q           R       +  
Sbjct: 217 GMNTHHAQKLPSSAKITEFRLLPAREFPLEAGKEMFRQNFASLFPNASARKIEFYNDVMA 276

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
             + Q IE Y+      +       LF Y+P+D+L+   ++               H   
Sbjct: 277 AIAPQGIEFYAPLFFELDAWMKTGNLFSYLPDDTLVVSHDNLSACHDEYYQQIQARHHSR 336

Query: 496 TLAEYGFRLP 505
               +   LP
Sbjct: 337 A---HDKSLP 343



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 7/174 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
           ++ ++ATP    L      + +  I  T              + ++   + I     +G 
Sbjct: 787 SLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLPKSDETIKEAILREILRGG 846

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + L E     R    H ++   E   ++ D    KF+VLV   +
Sbjct: 847 QVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNERELSVVMNDFYHKKFNVLVASTI 906

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K
Sbjct: 907 IETGIDVPNANTIIIHRADKFGIAQ----LHQLRGRVGRSHHQAYCYLMVPSLK 956


>gi|171320492|ref|ZP_02909522.1| transcription-repair coupling factor [Burkholderia ambifaria MEX-5]
 gi|171094277|gb|EDT39354.1| transcription-repair coupling factor [Burkholderia ambifaria MEX-5]
          Length = 1156

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 70/461 (15%), Positives = 149/461 (32%), Gaps = 77/461 (16%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFF 217
           +  +   ++     G  GS     +A+ +   +       V+  N + A +L  E + F 
Sbjct: 13  VARVKPGQRFAFD-GTHGSADALAIARYLAENRAAVPLLAVICANAVDAQRLSQELRYFS 71

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVS 276
           P   V               +P  +T      S ++ +   R +    L E     ++V 
Sbjct: 72  PDARVRL-------------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVP 118

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + + +Y +      +        G+ +++ +L + L    Y+     +  G + V G  I
Sbjct: 119 ATTALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLI 178

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +++P     + +R+ +F + ++ I  F P T + +  V  +++     +           
Sbjct: 179 DLYPM-GSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA----- 232

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
              +   + R  E  +                  + +        IE Y          +
Sbjct: 233 ---RTAFRSRWRETFEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----D 275

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TLF Y+P+D+ L        +      +  D  ++     +    P           
Sbjct: 276 ETATLFHYLPQDAHLVFTGD---LEASIRRFTADTKQRHAFLAHDRERP----------- 321

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP--------TGLVDPPVEIRSARTQV 568
               L P  + +S      E          +++ P        TGL +  V         
Sbjct: 322 ---ILEPQRLFLS-----DEDFFAFAKPFARVVLPAQPAGGWATGLPELTV-----DRHA 368

Query: 569 EDVYDEINLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +D    +    +  G R+LLTV +    E + + L E ++R
Sbjct: 369 DDPLAALRTFVESSGKRVLLTVESAGRRETILQLLAEHHLR 409



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 75/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 755 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--MREAMLRELKR 812

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L       R +  H ++   E   ++RD    + +VL+  
Sbjct: 813 GGQVYFLHNEVETIENRRAMLEALVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +S+  
Sbjct: 873 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQSLTK 928

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 929 ---QAQRRLEAIQQME 941


>gi|304437107|ref|ZP_07397070.1| transcription-repair coupling factor [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304370058|gb|EFM23720.1| transcription-repair coupling factor [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 1097

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 59/315 (18%), Positives = 110/315 (34%), Gaps = 24/315 (7%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+ QL +         +L G  G+ K   +A   +A  RP  ++   +        +  
Sbjct: 12  PALRQLTEVFAQPAAQTMLHGAAGALKHAAVAAAYDAAPRPLAIVTAGRDALRAWQEDLT 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR--MRHSATRSLLERNDC 272
              P   V               +P  D          + ++R   R +    LL     
Sbjct: 72  ALLPEADVY-------------ELPELDRIDFAAPGAAKGLERSAQRMNIMARLLRHEPI 118

Query: 273 IVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV++ +      G S   +S+  + L++G  + ++ L+  L    Y+        G F V
Sbjct: 119 IVLADIGAAAQKGLSTTEFSRAALSLRLGQDLPRETLMERLSALGYEHVPEVENVGQFSV 178

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP- 390
            G  +++FP +      RV  F  +I+ + E+ PLT + I+N+ T  I            
Sbjct: 179 RGGIVDVFPINALS-PIRVEFFDTEIDSMREYDPLTKRSIKNIGTASIMPLRAADDNGEA 237

Query: 391 ---TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
              +   A      +   RL+   ++G   +A R      +    +   G+ +  E +  
Sbjct: 238 CFLSYLGAAGTSVFDEPSRLMAALEDGVREDAVRAA--RCFSWAEMTAAGT-EGHEVFIS 294

Query: 448 YLTGRNPGEPPPTLF 462
            +    P   P TL 
Sbjct: 295 LMNRAVPTCTPQTLI 309



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 76/196 (38%), Gaps = 19/196 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA----- 579
            + +SATP    L        +  +  T    PP E    ++ V +  D +   A     
Sbjct: 703 VLTLSATPIPRTLHMSLAGARDMSVIET----PPAERLPVQSYVVESSDAMMRGAIEREL 758

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G +I          + + E+L +   + R    H ++      +++ D   G +D+L+
Sbjct: 759 SRGGQIYFIYNRVESIDRMREHLLQIVPQARIASAHGQMSEDILEQVMMDFYEGHYDILL 818

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             +++  G+D+     + I DAD+ G  +    L Q  GR  R+       +     K  
Sbjct: 819 ATSIIENGIDVANANTIIIYDADRFGLSQ----LYQMRGRVGRSAKMAFAYFTYRRDK-- 872

Query: 698 QLAIDETTRRREKQLE 713
              + ET  +R + ++
Sbjct: 873 --VLSETAEKRLQAMK 886


>gi|284046682|ref|YP_003397022.1| transcription-repair coupling factor [Conexibacter woesei DSM
           14684]
 gi|283950903|gb|ADB53647.1| transcription-repair coupling factor [Conexibacter woesei DSM
           14684]
          Length = 1112

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 97/251 (38%), Gaps = 24/251 (9%)

Query: 176 VTGSGKTFTMAKVIEAMQ-RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           V+ S + F +A + +    RP +V+A +   A  L ++ + +     V ++ S    Y+ 
Sbjct: 27  VSQSLRPFVVAALAQQDPARPLLVVAGDDRQARDLAADMRTWLQPRPVRFYPSRGVAYES 86

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI----GSVESY 290
               P               +  +R +A  +L+          V     +     +  + 
Sbjct: 87  HLAPPA-------------HLVGLRVAALDALIGERGAAAPVVVVSAVALSEKVPNP-AL 132

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
                 L++G+ ++  E    LV   Y+R D    RG F + G  ++++P+  ED A RV
Sbjct: 133 RPHGFTLRVGELMDLDESAEDLVAAGYERVDQVEDRGQFAIRGGLLDLYPA-TEDRAVRV 191

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR--LI 408
            +FG++IE +  F   T + + + E +++   +           A     E+   R  + 
Sbjct: 192 DLFGDEIESLRWFSTFTQRSLGDAEEVEVSPAAELA--PEHRELAEIAALEDADNRPDIA 249

Query: 409 ELEKEGRLLEA 419
           EL   G     
Sbjct: 250 ELLPVGDFHAM 260



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQV-----EDVYD 573
            L+   I +SATP    L+          IR   +++ P E  R  +T V     + V  
Sbjct: 715 KLKVDVIAMSATPIPRTLQMSIAG-----IRDISVIETPPEGRRPVKTYVGEYDEQLVKS 769

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLG 631
            I     +G +           ++  E L       R+   H ++      E +     G
Sbjct: 770 AIERERSRGGQAFFLHNRVETIDETAERLRALCPEARFEVAHGQLDEKTLEERMLRFLRG 829

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           + DVLV  +++  G+DIP+   + +  AD  G  +    L Q  GR  R+          
Sbjct: 830 EADVLVATSIIESGIDIPQANTLMVERADLFGLSQ----LYQIRGRVGRSRERAYAYLLY 885

Query: 692 TITKSI 697
               ++
Sbjct: 886 PSASAL 891



 Score = 38.5 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 65/188 (34%), Gaps = 27/188 (14%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFT--- 184
            +    S  +  F+    Y  + DQ  AI Q+   +  +R   +L+ G  G GKT     
Sbjct: 550 HAFPPDSDWMREFEDAWPYRETPDQREAIEQVKTDMETARPMDRLICGDVGYGKTEVALR 609

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
            A       R  +V+ P  ILA Q Y  F                  Y            
Sbjct: 610 AAFKAANDGRQVMVLVPTTILAQQHYGTFAERLKD------------YPF---------T 648

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304
           IE  S      ++   +A R+  E +  I++ +   +           +IV  +    V+
Sbjct: 649 IEHVSRFRPAAEQ--RAAIRAFTEGSVDILIGTHRLLSRDVRPRDLGLLIVDEEQRFGVK 706

Query: 305 QKELLSSL 312
           QKELL  L
Sbjct: 707 QKELLRQL 714


>gi|53719711|ref|YP_108697.1| transcription-repair coupling factor [Burkholderia pseudomallei
           K96243]
 gi|76810493|ref|YP_333905.1| transcription-repair coupling factor [Burkholderia pseudomallei
           1710b]
 gi|126438362|ref|YP_001059391.1| transcription-repair coupling factor [Burkholderia pseudomallei
           668]
 gi|134277056|ref|ZP_01763771.1| transcription-repair coupling factor [Burkholderia pseudomallei
           305]
 gi|167720072|ref|ZP_02403308.1| transcription-repair coupling factor [Burkholderia pseudomallei
           DM98]
 gi|167739084|ref|ZP_02411858.1| transcription-repair coupling factor [Burkholderia pseudomallei 14]
 gi|167824679|ref|ZP_02456150.1| transcription-repair coupling factor [Burkholderia pseudomallei 9]
 gi|167903188|ref|ZP_02490393.1| transcription-repair coupling factor [Burkholderia pseudomallei
           NCTC 13177]
 gi|226196247|ref|ZP_03791831.1| transcription-repair coupling factor [Burkholderia pseudomallei
           Pakistan 9]
 gi|237812718|ref|YP_002897169.1| transcription-repair coupling factor [Burkholderia pseudomallei
           MSHR346]
 gi|254179398|ref|ZP_04885997.1| transcription-repair coupling factor [Burkholderia pseudomallei
           1655]
 gi|254189215|ref|ZP_04895726.1| transcription-repair coupling factor [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254258111|ref|ZP_04949165.1| transcription-repair coupling factor [Burkholderia pseudomallei
           1710a]
 gi|52210125|emb|CAH36103.1| transcription-repair coupling factor [Burkholderia pseudomallei
           K96243]
 gi|76579946|gb|ABA49421.1| transcription-repair coupling factor [Burkholderia pseudomallei
           1710b]
 gi|126217855|gb|ABN81361.1| transcription-repair coupling factor [Burkholderia pseudomallei
           668]
 gi|134250706|gb|EBA50785.1| transcription-repair coupling factor [Burkholderia pseudomallei
           305]
 gi|157936894|gb|EDO92564.1| transcription-repair coupling factor [Burkholderia pseudomallei
           Pasteur 52237]
 gi|184209938|gb|EDU06981.1| transcription-repair coupling factor [Burkholderia pseudomallei
           1655]
 gi|225931703|gb|EEH27706.1| transcription-repair coupling factor [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506667|gb|ACQ98985.1| transcription-repair coupling factor [Burkholderia pseudomallei
           MSHR346]
 gi|254216800|gb|EET06184.1| transcription-repair coupling factor [Burkholderia pseudomallei
           1710a]
          Length = 1189

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 105/331 (31%), Gaps = 48/331 (14%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G  GS     +A+ + A +       V+  N + A +L  E   F P   V         
Sbjct: 57  GAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELAYFAPDARVRV------- 109

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESY 290
                 +P  +T      S ++ +   R +    L E     ++V + + +Y +      
Sbjct: 110 ------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFL 163

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +        G+ +++ +L + L    Y+     +  G + V G  I++FP     + +R+
Sbjct: 164 AAYTFSFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPM-GSPLPYRI 222

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F + ++ I  F P T + +  V  +++     +              +   + R  E 
Sbjct: 223 DLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA--------RTAFRSRWRET 274

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +                  + +        IE Y          +   TLF Y+PE + 
Sbjct: 275 FEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----DETATLFHYLPERAQ 320

Query: 471 LFVDESHVT--------IPQISGMYRGDFHR 493
           L                  Q       D  R
Sbjct: 321 LVFTGDLDAAIKRFTADTKQRHAFLSHDRER 351



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 786 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 843

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L E     R +  H ++   E   ++RD    + +VL+  
Sbjct: 844 GGQVYFLHNEVETIENRKAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 903

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +++  
Sbjct: 904 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQALTK 959

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 960 ---QAQRRLEAIQQME 972


>gi|213962106|ref|ZP_03390370.1| transcription-repair coupling factor [Capnocytophaga sputigena
           Capno]
 gi|213955112|gb|EEB66430.1| transcription-repair coupling factor [Capnocytophaga sputigena
           Capno]
          Length = 1110

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 100/245 (40%), Gaps = 15/245 (6%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             LLK + ++E  + + G+ G+  +  +  +   + RP +V+ P+K  +A + ++ +   
Sbjct: 15  QSLLKHLQTKENAE-VTGLAGASLSIVITNLFNTVHRPLLVLLPDKEESAYILNDLETLV 73

Query: 218 PHNAVEYFVSYYD-YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
               V +F   Y   YQ E      DT         E ++++ HS       +   IV  
Sbjct: 74  GEQQVLFFPDSYRRPYQIE------DTDNANVLLRAEVLNQLSHST------KPLLIVSY 121

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
             +    + + +   +  ++++ GDS+    L   L    + R D     G F V G  +
Sbjct: 122 PEALFEKVITRKQLEKNTLKIQKGDSLTIDFLNEVLFSYHFNRTDFVTEPGEFSVRGGIV 181

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++F S   +  +R+  FGN+++ I  F   +      +  I I  N           + +
Sbjct: 182 DVF-SFSNNEPYRIEFFGNEVDSIRTFDVESQLSTAQLSKITIIPNVENKESDEIRQSFL 240

Query: 397 KYIKE 401
           +YI E
Sbjct: 241 EYISE 245



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 70/196 (35%), Gaps = 19/196 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L+       +  +  T   +         +QV     E + D I    
Sbjct: 703 VLTLTATPIPRTLQFSLMAARDLSVINTPPPNR----YPIDSQVVPFNEEVIRDGIRYEI 758

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
           Q+G ++          +++   +       R    H ++   +  E +     G++DVLV
Sbjct: 759 QRGGQVFFMHNRVENIQEVAGMIQRLLPDARIAIGHGQMDGKKLEETMLAFMEGRYDVLV 818

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLD+P    + I +A   G     + L Q  GR  R+       +      ++
Sbjct: 819 ATTIIESGLDVPNANTIFINNAHNFGL----SDLHQMRGRVGRSNKKAFCYFITPPLIAM 874

Query: 698 QLAIDETTRRREKQLE 713
                +  R+R + + 
Sbjct: 875 ----SDDARKRIEAIA 886


>gi|172060905|ref|YP_001808557.1| transcription-repair coupling factor [Burkholderia ambifaria
           MC40-6]
 gi|171993422|gb|ACB64341.1| transcription-repair coupling factor [Burkholderia ambifaria
           MC40-6]
          Length = 1156

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 70/461 (15%), Positives = 149/461 (32%), Gaps = 77/461 (16%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFF 217
           +  +   ++     G  GS     +A+ +   +       V+  N + A +L  E + F 
Sbjct: 13  VARVKPGQRFAFD-GTHGSADALAIARYLAENRAAVPLLAVICANAVDAQRLSQELRYFS 71

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVS 276
           P   V               +P  +T      S ++ +   R +    L E     ++V 
Sbjct: 72  PDARVRL-------------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVP 118

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + + +Y +      +        G+ +++ +L + L    Y+     +  G + V G  I
Sbjct: 119 ATTALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLI 178

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +++P     + +R+ +F + ++ I  F P T + +  V  +++     +           
Sbjct: 179 DLYPM-GSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA----- 232

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
              +   + R  E  +                  + +        IE Y          +
Sbjct: 233 ---RTAFRSRWRETFEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----D 275

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TLF Y+P+D+ L        +      +  D  ++     +    P           
Sbjct: 276 ETATLFHYLPQDAHLVFTGD---LEASIRRFTADTKQRHAFLAHDRERP----------- 321

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP--------TGLVDPPVEIRSARTQV 568
               L P  + +S      E          +++ P        TGL +  V         
Sbjct: 322 ---ILEPQRLFLS-----DEDFFAFAKPFARVVLPAQPAGGWATGLPELTV-----DRHA 368

Query: 569 EDVYDEINLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +D    +    +  G R+LLTV +    E + + L E ++R
Sbjct: 369 DDPLAALRTFVESSGKRVLLTVESAGRRETILQLLAEHHLR 409



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 755 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 812

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L E     R +  H ++   E   ++RD    + +VL+  
Sbjct: 813 GGQVYFLHNEVETIENRRAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +S+  
Sbjct: 873 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQSLTK 928

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 929 ---QAQRRLEAIQQME 941


>gi|124385069|ref|YP_001029254.1| transcription-repair coupling factor [Burkholderia mallei NCTC
           10229]
 gi|126448727|ref|YP_001080811.1| transcription-repair coupling factor [Burkholderia mallei NCTC
           10247]
 gi|167919435|ref|ZP_02506526.1| transcription-repair coupling factor [Burkholderia pseudomallei
           BCC215]
 gi|238562222|ref|ZP_00440803.2| transcription-repair coupling factor [Burkholderia mallei GB8 horse
           4]
 gi|251766640|ref|ZP_02264525.2| transcription-repair coupling factor [Burkholderia mallei PRL-20]
 gi|254178318|ref|ZP_04884973.1| transcription-repair coupling factor [Burkholderia mallei ATCC
           10399]
 gi|254200090|ref|ZP_04906456.1| transcription-repair coupling factor [Burkholderia mallei FMH]
 gi|254206426|ref|ZP_04912778.1| transcription-repair coupling factor [Burkholderia mallei JHU]
 gi|254297281|ref|ZP_04964734.1| transcription-repair coupling factor [Burkholderia pseudomallei
           406e]
 gi|254358165|ref|ZP_04974438.1| transcription-repair coupling factor [Burkholderia mallei
           2002721280]
 gi|124293089|gb|ABN02358.1| transcription-repair coupling factor [Burkholderia mallei NCTC
           10229]
 gi|126241597|gb|ABO04690.1| transcription-repair coupling factor [Burkholderia mallei NCTC
           10247]
 gi|147749686|gb|EDK56760.1| transcription-repair coupling factor [Burkholderia mallei FMH]
 gi|147753869|gb|EDK60934.1| transcription-repair coupling factor [Burkholderia mallei JHU]
 gi|148027292|gb|EDK85313.1| transcription-repair coupling factor [Burkholderia mallei
           2002721280]
 gi|157807451|gb|EDO84621.1| transcription-repair coupling factor [Burkholderia pseudomallei
           406e]
 gi|160699357|gb|EDP89327.1| transcription-repair coupling factor [Burkholderia mallei ATCC
           10399]
 gi|238523096|gb|EEP86537.1| transcription-repair coupling factor [Burkholderia mallei GB8 horse
           4]
 gi|243065028|gb|EES47214.1| transcription-repair coupling factor [Burkholderia mallei PRL-20]
          Length = 1189

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 105/331 (31%), Gaps = 48/331 (14%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G  GS     +A+ + A +       V+  N + A +L  E   F P   V         
Sbjct: 57  GAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELAYFAPDARVRV------- 109

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESY 290
                 +P  +T      S ++ +   R +    L E     ++V + + +Y +      
Sbjct: 110 ------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFL 163

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +        G+ +++ +L + L    Y+     +  G + V G  I++FP     + +R+
Sbjct: 164 AAYTFSFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPM-GSPLPYRI 222

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F + ++ I  F P T + +  V  +++     +              +   + R  E 
Sbjct: 223 DLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA--------RTAFRSRWRET 274

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +                  + +        IE Y          +   TLF Y+PE + 
Sbjct: 275 FEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----DETATLFHYLPERAQ 320

Query: 471 LFVDESHVT--------IPQISGMYRGDFHR 493
           L                  Q       D  R
Sbjct: 321 LVFTGDLDAAIKRFTADTKQRHAFLSHDRER 351



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 786 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 843

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L E     R +  H ++   E   ++RD    + +VL+  
Sbjct: 844 GGQVYFLHNEVETIENRKAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 903

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +++  
Sbjct: 904 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQALTK 959

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 960 ---QAQRRLEAIQQME 972


>gi|53723684|ref|YP_103135.1| transcription-repair coupling factor [Burkholderia mallei ATCC
           23344]
 gi|121600246|ref|YP_993304.1| transcription-repair coupling factor [Burkholderia mallei SAVP1]
 gi|52427107|gb|AAU47700.1| transcription-repair coupling factor [Burkholderia mallei ATCC
           23344]
 gi|121229056|gb|ABM51574.1| transcription-repair coupling factor [Burkholderia mallei SAVP1]
          Length = 1157

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 105/331 (31%), Gaps = 48/331 (14%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G  GS     +A+ + A +       V+  N + A +L  E   F P   V         
Sbjct: 25  GAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELAYFAPDARVRV------- 77

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESY 290
                 +P  +T      S ++ +   R +    L E     ++V + + +Y +      
Sbjct: 78  ------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFL 131

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +        G+ +++ +L + L    Y+     +  G + V G  I++FP     + +R+
Sbjct: 132 AAYTFSFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPM-GSPLPYRI 190

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F + ++ I  F P T + +  V  +++     +              +   + R  E 
Sbjct: 191 DLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA--------RTAFRSRWRET 242

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +                  + +        IE Y          +   TLF Y+PE + 
Sbjct: 243 FEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----DETATLFHYLPERAQ 288

Query: 471 LFVDESHVT--------IPQISGMYRGDFHR 493
           L                  Q       D  R
Sbjct: 289 LVFTGDLDAAIKRFTADTKQRHAFLSHDRER 319



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 754 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 811

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L E     R +  H ++   E   ++RD    + +VL+  
Sbjct: 812 GGQVYFLHNEVETIENRKAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +++  
Sbjct: 872 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQALTK 927

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 928 ---QAQRRLEAIQQME 940


>gi|170699745|ref|ZP_02890779.1| transcription-repair coupling factor [Burkholderia ambifaria
           IOP40-10]
 gi|170135336|gb|EDT03630.1| transcription-repair coupling factor [Burkholderia ambifaria
           IOP40-10]
          Length = 1156

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/461 (15%), Positives = 149/461 (32%), Gaps = 77/461 (16%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFF 217
           +  +   ++     G  GS     +A+ +   +       V+  N + A +L  E + F 
Sbjct: 13  VARVKPGQRFAFD-GTHGSADALAIARYLAENRTAVPLLAVICANAVDAQRLSQELRYFS 71

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVS 276
           P   V               +P  +T      S ++ +   R +    L E     ++V 
Sbjct: 72  PDARVRL-------------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVP 118

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + + +Y +      +        G+ +++ +L + L    Y+     +  G + V G  I
Sbjct: 119 ATTALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLI 178

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +++P     + +R+ +F + ++ I  F P T + +  V  +++     +           
Sbjct: 179 DLYPM-GSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA----- 232

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
              +   + R  E  +                  + +        IE Y          +
Sbjct: 233 ---RTAFRSRWRETFEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----D 275

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TLF Y+P+D+ L        +      +  D  ++     +    P           
Sbjct: 276 ETATLFHYLPQDAHLVFTGD---LEASIRRFTADTKQRHAFLAHDRERP----------- 321

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP--------TGLVDPPVEIRSARTQV 568
               L P  + +S      E          +++ P        TGL +  V         
Sbjct: 322 ---ILEPQRLFLS-----DEDFFAFAKPFARVVLPAQPAGGWATGLPELTV-----DRHA 368

Query: 569 EDVYDEINLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +D    +    +  G R+LLTV +    E + + L E ++R
Sbjct: 369 DDPLAALRTFVESSGKRVLLTVESAGRRETILQLLAEHHLR 409



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 755 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 812

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L E     R +  H ++   E   ++RD    + +VL+  
Sbjct: 813 GGQVYFLHNEVETIENRRAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +S+  
Sbjct: 873 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQSLTK 928

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 929 ---QAQRRLEAIQQME 941


>gi|86742605|ref|YP_483005.1| transcription-repair coupling factor [Frankia sp. CcI3]
 gi|86569467|gb|ABD13276.1| transcription-repair coupling factor [Frankia sp. CcI3]
          Length = 1208

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 87/498 (17%), Positives = 158/498 (31%), Gaps = 70/498 (14%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            RP + +      A  L S   +    + V  F S+ +    E   PR DT  ++ +   
Sbjct: 53  DRPVLAVVATGREAEDLASALGSLLGPDVVTVFPSW-ETLPHERLSPRADTVGQRLAV-- 109

Query: 253 EQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
             + R+ H A+         IVV+S+  +             V L  GD+ +   +++ L
Sbjct: 110 --LRRLAHPASTG--RPPLRIVVASIRAVLQPQVAGLGELAPVTLAEGDTADLDGVVTRL 165

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           V   Y R D+   RG   V G  +++FP   E+   RV  FG+++E+I  F     + + 
Sbjct: 166 VDIAYHRVDLVERRGEIAVRGGILDVFPP-TEEHPLRVEFFGDEVEDIRRFSVADQRALP 224

Query: 373 NVETIKIYANSHYVTP-RPTLNTA-MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
             +         +  P    L TA ++    +L  R  EL                   L
Sbjct: 225 EDDGATGGGRVLFAPPCSELLLTAQVRARAADLATRHPELLD----------------LL 268

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMY 487
           + +      + +E  +  L           L + +P  + + V +         ++    
Sbjct: 269 DKIADGIPVEGMEALAPVLVDAM-----SLLLDDLPAGTHVLVCDPERVRSRASELVRTS 323

Query: 488 RGDFHRKATLAEYGFRLP---------SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
           +       ++A  G   P         S ++ R    +        T  +S TP   + E
Sbjct: 324 QEFLDASWSVAALGGGAPIDLGAAAYRSIIEVRERAEDLGLPWWSVTPFMS-TPAGSDRE 382

Query: 539 QCQGIIVEQIIRPTGLVDP----------PVEIRSA---RTQVEDVYDEINLAAQQGLRI 585
                +       T   D              +R A         V  ++     +  R+
Sbjct: 383 PAGTGLTGAAYDGTEYGDNYGDNYGDNTVVASLRPAPIYHGDTAAVIADVKGWLAESWRV 442

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           LL       A+ L E L + ++              +     L  G    +V    L  G
Sbjct: 443 LLVTEGHGPAQRLVEMLRDADLGAG-----------LAEEATLTPGV--AIVTCGRLATG 489

Query: 646 LDIPECGLVAILDADKEG 663
                  L  + ++D  G
Sbjct: 490 FTSDTLRLAVLTESDIAG 507



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 51/150 (34%), Gaps = 13/150 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV--EDVYDEINLAAQQ 581
            + +SATP    LE          IR    +D P E R    T V   D         ++
Sbjct: 804 VLTMSATPIPRTLEMSITG-----IRELSTIDTPPEERHPVLTSVAAYDARQVAAAIRRE 858

Query: 582 GLR---ILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVL 636
            LR   +          +     L +     R    H ++      +++      KFDVL
Sbjct: 859 LLREGQVFFIHNRVETIDRAAARLRDLVPEARIATAHGQLHEDALEQVMVSFWEKKFDVL 918

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLR 666
           V   ++  GLDI     + +  AD  G  +
Sbjct: 919 VCTTIVESGLDISNANTLIVERADVFGLSQ 948


>gi|71907594|ref|YP_285181.1| transcription-repair coupling factor [Dechloromonas aromatica RCB]
 gi|71847215|gb|AAZ46711.1| transcription-repair coupling factor [Dechloromonas aromatica RCB]
          Length = 1147

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 112/327 (34%), Gaps = 40/327 (12%)

Query: 173 LLGVTGSGKTFTMAKV-IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           L  + GS     +A++ +    +   V+  N   A +L  E   F P+  V         
Sbjct: 22  LPSLAGSADALALAEIAVGNPGKLLAVVTANAADAQRLLDEIPWFAPNLRVRL------- 74

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESY 290
                 +P  +T      S ++ +   R +   +  +   D ++V + + +Y +      
Sbjct: 75  ------LPDWETLPYDTFSPHQDLVSERLATLWAATQGELDILLVPATTAVYRLAPPAFL 128

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +      K G++++ ++  S +    Y      +  G + + G  I++FP     + +R+
Sbjct: 129 AAYTFAFKKGETLDAEKFRSQVTLAGYAHVTQVVSPGEYSIRGGLIDLFPM-GSQLPYRL 187

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F ++IE I  F   T + +  V  +++     +           +  +E         
Sbjct: 188 DLFDDEIESIKTFDVDTQRTVYPVPEVRLLPAREFPMDDKGRTHFRQAFRE------TFE 241

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
               +    + + Q I               IE Y          +   T+F+Y+P D++
Sbjct: 242 GDPAKSGIYKDVSQGIA-----------SAGIEYYLPLFF-----DETATVFDYLPRDAV 285

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATL 497
                       I+  +     R A L
Sbjct: 286 FVTHGDAP--AAIAAFWNDTRSRYAML 310



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 76/193 (39%), Gaps = 13/193 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  +  T      + I++  ++  D  + + +    ++G
Sbjct: 748 VLTLTATPIPRTLAMSMEGLRDFSVIAT-APQKRLAIKTFVSKFSDGIIREAVLRELKRG 806

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E++ E L +     R +  H ++   E   ++RD    + ++L+   
Sbjct: 807 GQVYFLHNEVDTIENMREKLEKLVPEARIVIGHGQMNERELERVMRDFTQQRANLLLCTT 866

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D P    + I  ++K G  +    L Q  GR  R+ +           K++   
Sbjct: 867 IIETGIDNPHANTILINRSEKFGLAQ----LHQLRGRVGRSHHQAYAYLLVQDEKAMTK- 921

Query: 701 IDETTRRRE-KQL 712
             +  +R E  Q+
Sbjct: 922 --QAKQRLEAIQM 932


>gi|167816296|ref|ZP_02447976.1| transcription-repair coupling factor [Burkholderia pseudomallei 91]
          Length = 1175

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 105/331 (31%), Gaps = 48/331 (14%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G  GS     +A+ + A +       V+  N + A +L  E   F P   V         
Sbjct: 43  GAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELAYFAPDARVRV------- 95

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESY 290
                 +P  +T      S ++ +   R +    L E     ++V + + +Y +      
Sbjct: 96  ------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFL 149

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +        G+ +++ +L + L    Y+     +  G + V G  I++FP     + +R+
Sbjct: 150 AAYTFSFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPM-GSPLPYRI 208

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F + ++ I  F P T + +  V  +++     +              +   + R  E 
Sbjct: 209 DLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA--------RTAFRSRWRET 260

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +                  + +        IE Y          +   TLF Y+PE + 
Sbjct: 261 FEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----DETATLFHYLPERAQ 306

Query: 471 LFVDESHVT--------IPQISGMYRGDFHR 493
           L                  Q       D  R
Sbjct: 307 LVFTGDLDAAIKRFTADTKQRHAFLSHDRER 337



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 772 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 829

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L E     R +  H ++   E   ++RD    + +VL+  
Sbjct: 830 GGQVYFLHNEVETIENRKAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 889

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +++  
Sbjct: 890 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQALTK 945

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 946 ---QAQRRLEAIQQME 958


>gi|167755583|ref|ZP_02427710.1| hypothetical protein CLORAM_01097 [Clostridium ramosum DSM 1402]
 gi|167704522|gb|EDS19101.1| hypothetical protein CLORAM_01097 [Clostridium ramosum DSM 1402]
          Length = 1144

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 129/363 (35%), Gaps = 35/363 (9%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A   LLKG    E   ++  +    +   +      +Q+  IV+ PN+  A  LY +
Sbjct: 10  QNPAFKTLLKG----EGNIIVNDLND--EALLVTSAFLTLQKDIIVIKPNQYEANLLYQQ 63

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                  +++              + P  ++Y  +  + + ++   R  A   L      
Sbjct: 64  ISLINEKDSL--------------FFPVDESYRIEALASSPELLGQRIDALYQLTTDQPK 109

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           I+++    +   + S + +    + LK G  ++  +L   L+K  Y           F  
Sbjct: 110 ILITHGQALVRYLPSRQLFLDNCLNLKTGMQIDIYDLQKLLIKAGYTSAPRVDQPFYFSK 169

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I++F    ++   R+  F ++I+ I  +   + + I  V+ + I   S  +     
Sbjct: 170 RGGVIDVFSIQYDN-PLRIEFFDDEIDNIRFYNQNSQRTIEKVKEVTIIPASDILYDEQE 228

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           +   +  I +    ++ EL++    L  +    +++ D E L    +  ++  Y      
Sbjct: 229 VPAVLSKINDLRDRQIEELDE----LYQEDYLSKVSIDQENLRNHDTSFTMYGYFNLFN- 283

Query: 452 RNPGEPPPTLFEYIPEDSLLFV-DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
                   +L +Y+  D+ L +   +H            + +    LA  G  +      
Sbjct: 284 -----QTASLLDYL--DTPLIIQANNHDINFAYKNYLEENHYYYQELASIGKTIKGLNLF 336

Query: 511 RPL 513
           R L
Sbjct: 337 RDL 339



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 70/196 (35%), Gaps = 12/196 (6%)

Query: 525 TIVVSATPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
            + ++ATP    L+        + QI  P     P       +  V  +   I     + 
Sbjct: 753 VLTLTATPIPRTLQMSLMGIRGLSQIETPPKNRQPVQTYVIEKNNV-LIKQIIERELARD 811

Query: 583 LRILLTVLTKRMAEDLT--EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++           ++     L     RV   H ++   E  +++      +F+VLV   
Sbjct: 812 GQVFYLYNRTSQIANVAYNITLSVPGARVAVGHGQMDKNELEDVMMRFVNKEFNVLVCTT 871

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+DIP    + + DADK G  +    L Q  GR  R+            TK +   
Sbjct: 872 IIETGIDIPNANTIIVEDADKFGLSQ----LYQIKGRVGRSNRGAYAYLLYNPTKVLN-- 925

Query: 701 IDETTRRREKQLEHNK 716
            +E ++R +   E  +
Sbjct: 926 -EEASKRLKAIKEFTE 940


>gi|237734333|ref|ZP_04564814.1| transcription-repair coupling factor [Mollicutes bacterium D7]
 gi|229382563|gb|EEO32654.1| transcription-repair coupling factor [Coprobacillus sp. D7]
          Length = 1144

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 129/363 (35%), Gaps = 35/363 (9%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A   LLKG    E   ++  +    +   +      +Q+  IV+ PN+  A  LY +
Sbjct: 10  QNPAFKTLLKG----EGNIIVNDLND--EALLVTSAFLTLQKDIIVIKPNQYEANLLYQQ 63

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                  +++              + P  ++Y  +  + + ++   R  A   L      
Sbjct: 64  ISLINEKDSL--------------FFPVDESYRIEALASSPELLGQRIDALYQLTTDQPK 109

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           I+++    +   + S + +    + LK G  ++  +L   L+K  Y           F  
Sbjct: 110 ILITHGQALVRYLPSRQLFLDNCLNLKTGMQIDIYDLQKLLIKAGYTSAPRVDQPFYFSK 169

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I++F    ++   R+  F ++I+ I  +   + + I  V+ + I   S  +     
Sbjct: 170 RGGVIDVFSIQYDN-PLRIEFFDDEIDNIRFYNQNSQRTIEKVKEVTIIPASDILYDEQE 228

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           +   +  I +    ++ EL++    L  +    +++ D E L    +  ++  Y      
Sbjct: 229 VPAVLSKINDLRDRQIEELDE----LYQEDYLSKVSIDQENLRNHDTSFTMYGYFNLFN- 283

Query: 452 RNPGEPPPTLFEYIPEDSLLFV-DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
                   +L +Y+  D+ L +   +H            + +    LA  G  +      
Sbjct: 284 -----QTASLLDYL--DTPLIIQANNHDINFAYKNYLEENHYYYQELASIGKTIKGLNLF 336

Query: 511 RPL 513
           R L
Sbjct: 337 RDL 339



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 70/196 (35%), Gaps = 12/196 (6%)

Query: 525 TIVVSATPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
            + ++ATP    L+        + QI  P     P       +  V  +   I     + 
Sbjct: 753 VLTLTATPIPRTLQMSLMGIRGLSQIETPPKNRQPVQTYVIEKNNV-LIKQIIERELARD 811

Query: 583 LRILLTVLTKRMAEDLT--EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++           ++     L     RV   H ++   E  +++      +F+VLV   
Sbjct: 812 GQVFYLYNRTSQIANVAYNITLSVPGARVAVGHGQMDKNELEDVMMRFVNKEFNVLVCTT 871

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+DIP    + + DADK G  +    L Q  GR  R+            TK +   
Sbjct: 872 IIETGIDIPNANTIIVEDADKFGLSQ----LYQIKGRVGRSNRGAYAYLLYNPTKVLN-- 925

Query: 701 IDETTRRREKQLEHNK 716
            +E ++R +   E  +
Sbjct: 926 -EEASKRLKAIKEFTE 940


>gi|126453184|ref|YP_001066662.1| transcription-repair coupling factor [Burkholderia pseudomallei
           1106a]
 gi|167846208|ref|ZP_02471716.1| transcription-repair coupling factor [Burkholderia pseudomallei
           B7210]
 gi|167911421|ref|ZP_02498512.1| transcription-repair coupling factor [Burkholderia pseudomallei
           112]
 gi|242317637|ref|ZP_04816653.1| transcription-repair coupling factor [Burkholderia pseudomallei
           1106b]
 gi|254198050|ref|ZP_04904472.1| transcription-repair coupling factor [Burkholderia pseudomallei
           S13]
 gi|126226826|gb|ABN90366.1| transcription-repair coupling factor [Burkholderia pseudomallei
           1106a]
 gi|169654791|gb|EDS87484.1| transcription-repair coupling factor [Burkholderia pseudomallei
           S13]
 gi|242140876|gb|EES27278.1| transcription-repair coupling factor [Burkholderia pseudomallei
           1106b]
          Length = 1189

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 105/331 (31%), Gaps = 48/331 (14%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G  GS     +A+ + A +       V+  N + A +L  E   F P   V         
Sbjct: 57  GAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELAYFAPDARVRV------- 109

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESY 290
                 +P  +T      S ++ +   R +    L E     ++V + + +Y +      
Sbjct: 110 ------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFL 163

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +        G+ +++ +L + L    Y+     +  G + V G  I++FP     + +R+
Sbjct: 164 AAYTFSFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPM-GSPLPYRI 222

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F + ++ I  F P T + +  V  +++     +              +   + R  E 
Sbjct: 223 DLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA--------RTAFRSRWRET 274

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +                  + +        IE Y          +   TLF Y+PE + 
Sbjct: 275 FEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----DETATLFHYLPERAQ 320

Query: 471 LFVDESHVT--------IPQISGMYRGDFHR 493
           L                  Q       D  R
Sbjct: 321 LVFTGDLDAAIKRFTADTKQRYAFLSHDRER 351



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 786 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 843

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L E     R +  H ++   E   ++RD    + +VL+  
Sbjct: 844 GGQVYFLHNEVETIENRKAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 903

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +++  
Sbjct: 904 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQALTK 959

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 960 ---QAQRRLEAIQQME 972


>gi|290475839|ref|YP_003468731.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus
           bovienii SS-2004]
 gi|289175164|emb|CBJ81967.1| transcription-repair ATP-dependent coupling factor [Xenorhabdus
           bovienii SS-2004]
          Length = 1146

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 122/332 (36%), Gaps = 38/332 (11%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
             R  ++ L  +TG+      A++IE    P +++  +   A +L  E   F        
Sbjct: 11  ERRGDIRQLGHLTGAACAVECAEIIERHSGPVLLVTQDMQNALRLRDEILQF-------- 62

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL-LERNDCIVVSSVSCIYG 283
                  + P   +   +T      S +++I   R S    L       +++   + +  
Sbjct: 63  ------THAPINMLSDWETLPYDSFSPHQEIISNRLSTLYHLPFMTKGALILPVNTLMQR 116

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +   E   +  + +  G  + + +L + L +  Y+  +  +  G F   G   ++FP   
Sbjct: 117 VCPHEYLKRHALVMFKGQRLSRDKLRTELEQSGYRSVEQVLEHGEFATRGALFDMFPMGS 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E   +R+  F ++I+ +  F   + + +  VETI +     + T +     A++  + + 
Sbjct: 177 E-HPYRIDFFDDEIDSLRTFDIDSQRTLVEVETINLLPAHEFPTDQE----AIELFRSQW 231

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           + +           E +R  + I    + +        IE +          +P P +F 
Sbjct: 232 REQ----------FEVRRDAEHI---YQQVSKKMLPAGIEYWQPLF----FEQPLPAIFN 274

Query: 464 YIPEDSLLFVDESHVTIPQI-SGMYRGDFHRK 494
           Y+PE++LL   +      +      +    RK
Sbjct: 275 YLPENTLLITQDLVSAAERFWQDTAQRFESRK 306



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 750 VLTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VRESILREILR 807

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E     L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 808 GGQVYYLYNDVENIEKAKNRLEELVPEARIVVGHGQMRERDLERVMADFHHQRFNVLVCT 867

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 868 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 921


>gi|261494132|ref|ZP_05990635.1| transcription repair coupling factor [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496027|ref|ZP_05992437.1| transcription repair coupling factor [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261308277|gb|EEY09570.1| transcription repair coupling factor [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310298|gb|EEY11498.1| transcription repair coupling factor [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 1177

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 111/320 (34%), Gaps = 38/320 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +  Q L  + G   T  +++   A     +V+ P+   A +L  +    F    V+ F  
Sbjct: 16  QDHQTLGNLVGYSDTLAISQAARAFYGLTVVVTPDTRTALRL-EKALPQFAGLPVQLF-- 72

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGS 286
                      P  +T      S ++ I   R SA   L + R   +++   + +  +  
Sbjct: 73  -----------PDWETLPYDNFSPHQDIISARLSALFELQQGRQQILLLPINTLMQKVCP 121

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
               +  ++ +K GD    ++L   L    Y+  +  +  G + V G  +++FP   E+ 
Sbjct: 122 PNYLANNVLLIKKGDRFSIQKLRLQLENAGYRAVEQVLEYGEYAVRGSILDLFPMGAEE- 180

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ I  F     +    +  I +     + T    +             R
Sbjct: 181 PFRLDFFDDEIDSIRTFDVDNQRTKTEIAEINLLPAHEFPTDSNGIEHF----------R 230

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
           +   EK G   E +R  + I    + +        IE +          E   +LF+Y P
Sbjct: 231 VKFREKFG---EIRREPEHI---YQQVSKGILNAGIEYWQPLFF-----EEMASLFDYFP 279

Query: 467 EDS-LLFVDESHVTIPQISG 485
             +  +   +      Q   
Sbjct: 280 AQTLFITFADIQQKAEQFHQ 299



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R +   V  + + I     +
Sbjct: 783 ILTLTATPIPRTLNMALNGMRDLSIIASPPARRLLIKTFVRQSDEMV--IREAILREILR 840

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+  E L E     R +  H +++  E   ++ D    +F++LV  
Sbjct: 841 GGQVYYLHNDVATIENCAEKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCS 900

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 901 TIIETGIDVPTANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYMLTPHPKTLTK 956


>gi|91783503|ref|YP_558709.1| transcription-repair coupling factor [Burkholderia xenovorans
           LB400]
 gi|91687457|gb|ABE30657.1| transcription-repair coupling factor [Burkholderia xenovorans
           LB400]
          Length = 1160

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 83/534 (15%), Positives = 171/534 (32%), Gaps = 81/534 (15%)

Query: 144 QTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK--VIEAMQRPAIVMAP 201
            + Y P    P A+      + + ++     G  GS     +A+  +    + P + +  
Sbjct: 7   SSQYSP----PVAL------VKAGQRFAFD-GTHGSSDALLIARYHLAYREKVPLLAVVC 55

Query: 202 -NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            + + A +L  E   F P   V               +P  +T      S ++ +   R 
Sbjct: 56  ESAVDAQRLAQEIGFFAPEARVRL-------------LPDWETLPYDTFSPHQDLVSERL 102

Query: 261 SATRSLLERND-CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +    L E     ++V + + +Y +      +        G+ +++ +L S L    Y+ 
Sbjct: 103 ATLHDLGEGRCDILLVPATTALYRMPPASFLAAYTFSFSQGERLDEAKLKSQLTLAGYEH 162

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
               +  G + V G  ++++P     + +R+ +F + ++ I  F P T + +  V+ +++
Sbjct: 163 VSQVVRPGEYCVRGSLLDLYPM-GSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVKDVRL 221

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
                +                    R     +     E       I  D   +  +   
Sbjct: 222 LPGREFPFDE--------------AARTAFRSRWRETFEGDPSRASIYKD---IGNSVPS 264

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IE Y          +   TLF Y+PE + L        +      +  D  ++     
Sbjct: 265 AGIEYYLPLFF-----DDTATLFHYLPEGAQLAFVGD---LDAAIRRFTNDTKQRYNFLS 316

Query: 500 YGFRLPSCMDNR-PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +    P     R  L  E++  L      + A P +        +    I R     DP 
Sbjct: 317 HDRDRPILEPQRLFLSDEDFFTLAKPFARL-ALPANAGGGWSTPLPNLAIDRH--AEDPV 373

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
             +R+      +             R+L    +    E L + L + ++R          
Sbjct: 374 AALRAYLDTTPN-------------RVLFATESAGRRETLLQLLADNHLR---------- 410

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
               +  +D  LG     +G+  L  G  +P  G+  I + +  G L  +    
Sbjct: 411 PASSDSFQDWLLGDSRFSLGVAPLANGFAVPVDGIAIITETELYGPLARRAGRR 464



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 756 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDSV--IREAMLRELKR 813

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+  + L       R    H ++   E   ++RD    + +VL+  
Sbjct: 814 GGQVYFLHNEVETIENRRQMLEALVPEARIAVAHGQMHERELERVMRDFVAQRANVLLCT 873

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     Y+  +    Q 
Sbjct: 874 TIIETGIDVPSANTILIHRADKFGLAQ----LHQLRGRVGRSHHQ---AYSYLLVHDPQG 926

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 927 LTKQAQRRLEAIQQME 942


>gi|188534138|ref|YP_001907935.1| transcription-repair coupling factor [Erwinia tasmaniensis Et1/99]
 gi|188029180|emb|CAO97052.1| Transcription-repair coupling factor (ATP-dependent helicase mfd)
           [Erwinia tasmaniensis Et1/99]
          Length = 1148

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 119/312 (38%), Gaps = 38/312 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + SR   Q  LG +TG+      A++ E  Q P +++A +   A +L  E K F      
Sbjct: 9   LPSRAGDQRQLGQLTGAACAVECAEIAERHQGPVMLIAQDMQNALRLQDEIKQFTD---- 64

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                     QP   +   +T      S +++I   R S    L      I++  V+ + 
Sbjct: 65  ----------QPVMALADWETLPFDSFSPHQEIISSRLSTLYQLPTLASGILILPVNTLM 114

Query: 283 GIGSVESYSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                 ++     + ++ G  + +  L + L +  Y+  D  +  G F   G  ++++P 
Sbjct: 115 QRVCPHNFLHGHALVMQKGQRLSRDTLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPM 174

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E   +R+  F ++I+ +  F   + + +  V  I +     +    PT   A++  + 
Sbjct: 175 GSE-RPYRIDFFDDEIDSLRLFDIDSQRTLEEVAAINLLPAHEF----PTDKNAIELFRS 229

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +             EA+ + Q+++              IE +        P  P   L
Sbjct: 230 QWRE------HFDVRREAEHIYQQVSK-------GTLPAGIEYWQPLF-FEQPLLP---L 272

Query: 462 FEYIPEDSLLFV 473
           F Y+P ++LL +
Sbjct: 273 FSYLPANTLLVI 284



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 9/177 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--YDEINLAAQQG 582
            + ++ATP    L      + +  I  T        +++   + +D+   + I     +G
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-VKTFVREYDDLSVREAILREVLRG 809

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E     L E     R    H +++  E   ++ D    +F+VLV   
Sbjct: 810 GQVYYLYNDVENIEKAATRLSELVPEARVAIGHGQMRERELERVMNDFHHQRFNVLVCTT 869

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++  G+DIP    + I  AD+ G  +    L Q  GR  R+ +           KS+
Sbjct: 870 IIETGIDIPTANTIIIERADRFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKSM 922


>gi|149204032|ref|ZP_01881000.1| transcription-repair coupling factor [Roseovarius sp. TM1035]
 gi|149142474|gb|EDM30519.1| transcription-repair coupling factor [Roseovarius sp. TM1035]
          Length = 1150

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 109/333 (32%), Gaps = 42/333 (12%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           + +   + G         +   +     P + +A +    A + +  + F P   V  F 
Sbjct: 3   KAQHITVGGAPEGFDATLILAEVAKTGAPVLHVARDDKRMAAMQAALRFFAPDMPVITF- 61

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER---NDCIVVSSVSCIYG 283
                       P  D       S N +I   R +    L         ++ +  +    
Sbjct: 62  ------------PGWDCLPYDRVSPNAEISATRMATLAGLAHGGPSQFVLLTTLNAATQR 109

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           + + E          +G+ +++K L   LV+  + +       G + + G  I+I+P   
Sbjct: 110 VPAREVLRGAAFVAAVGERIDEKALRDFLVRMGFTQAPTVTEPGDYALRGGIIDIYPP-G 168

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E    R+ +FG+ ++ +  F P T +    ++ +++   S  +     +    +  + E 
Sbjct: 169 EGGPVRLDLFGDVLDGVRGFDPGTQRTTEKLDRVELAPVSEVILDEEAIRRFRQNYRIE- 227

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
                     G                E +        +E++  +   R  G     LF+
Sbjct: 228 ------FGAAGTD----------DPLYEAVSAGRKHAGVEHWLPFFHERLEG-----LFD 266

Query: 464 YIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           Y+P+ + + +DE     PQ    +     +  T
Sbjct: 267 YLPQ-ATITLDE--QVTPQRLARWESIADQYET 296



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 69/178 (38%), Gaps = 9/178 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ + V   + +     +
Sbjct: 745 HVLTLTATPIPRTLQLSLSGVRDLSIISTPPVDRL-SIRTYVSEFDSVTVREALLREHYR 803

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ ++L  +   V Y+  H ++   E  E +     GK+DVL+  
Sbjct: 804 GGQSFYVVPRISDLPEIEDFLKTQVPEVSYVIAHGQMAAGELDERMNAFYDGKYDVLLAT 863

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  GLDIP    + I  AD  G  +    L Q  GR  R+               +
Sbjct: 864 TIVESGLDIPTANTMIIHRADMFGLSQ----LYQIRGRVGRSKTRAYAYLTTKPRVPL 917



 Score = 39.3 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            Y  + DQ  AI  +L  + S     +L+ G  G GKT      A V         V+AP
Sbjct: 593 PYQETDDQLHAIEDVLNDLGSGAPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAVIAP 652

Query: 202 NKILAAQLYSEFKNFFPHNAV 222
             +LA Q Y EF + F    V
Sbjct: 653 TTLLARQHYQEFASRFRGFPV 673


>gi|295676504|ref|YP_003605028.1| transcription-repair coupling factor [Burkholderia sp. CCGE1002]
 gi|295436347|gb|ADG15517.1| transcription-repair coupling factor [Burkholderia sp. CCGE1002]
          Length = 1159

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 80/502 (15%), Positives = 158/502 (31%), Gaps = 68/502 (13%)

Query: 175 GVTGSGKTFTMAK--VIEAMQRPAIVMAP-NKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G  GS     +A+  +    + P + +   + + A +L  E   F P   V         
Sbjct: 27  GTRGSSDALLIARYHLTYREKMPLLAVVCESAVDAQRLSQEIGFFAPDARVRL------- 79

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESY 290
                 +P  +T      S ++ +   R +    L E     ++V + + +Y +      
Sbjct: 80  ------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFL 133

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +        G+ +++ +L + L    Y+     +  G + V G  +++FP     + +R+
Sbjct: 134 AAYTFSFSQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLLDLFPM-GSPLPYRI 192

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F + ++ I  F P T + +  V+ +++     +                    R    
Sbjct: 193 DLFDDQVDSIRAFDPDTQRSLYPVKDVRLLPGREFPFDE--------------AARTAFR 238

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +     E       I  D   +        IE Y          E   TLF Y+P+ S 
Sbjct: 239 SRWRETFEGDPSRASIYKD---IGNGVPSAGIEYYLPLFF-----EETATLFHYLPDGSQ 290

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
           L        +  +    R   +         F   S   +RP+   +   L        A
Sbjct: 291 LAF------VGDLDAAIRRFTNDTKQR----FNFLSHDRDRPILEPQTLFLSDEDFFAFA 340

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
            P +  +    G     I  P   +D     R A   V  +   ++       R+L    
Sbjct: 341 KPFARLVLPSNGGGAWSIALPNLAID-----RHADDPVSALRAYLSTTP---NRVLFAAE 392

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           +    E L + L +  ++     S    L+                +G+  L  G  +P 
Sbjct: 393 SAGRRETLLQLLADNQLKPASADSFADWLKSDAPFS----------LGVAPLANGFAVPG 442

Query: 651 CGLVAILDADKEGFLRSKTSLI 672
            G+  I + +  G L  +    
Sbjct: 443 DGIAIITETELYGPLARRAGRR 464



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 756 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDSV--IREAMLRELKR 813

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+  + L       R    H ++   E   ++RD    + +VL+  
Sbjct: 814 GGQVYFLHNEVETIENRRQMLEALVPEARIAVAHGQMHERELERVMRDFVAQRANVLLCT 873

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  +DK G  +    L Q  GR  R+ +     Y+  +    Q 
Sbjct: 874 TIIETGIDVPSANTILIHRSDKFGLAQ----LHQLRGRVGRSHHQ---AYSYLLVHDPQG 926

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 927 LTKQAQRRLEAIQQME 942


>gi|332878210|ref|ZP_08445938.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683822|gb|EGJ56691.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 1104

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 101/251 (40%), Gaps = 17/251 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQ---LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQL 209
           Q  A + L K + ++ + Q    + G+ G+  +  +A +     RP +V+ P+K  +A +
Sbjct: 6   QSLAQSSLYKSLLAKVQAQNSTTVGGLAGASLSAVVANLYTHTHRPLLVLLPDKEESAYV 65

Query: 210 YSEFKNFFPHNAVEYFVSYYD-YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
            ++ +       V +F   Y   YQ E      DT         E + ++ HS       
Sbjct: 66  LNDLETLVGEQRVLFFPDSYRRPYQIE------DTDNANVLLRAEVLHQLSHST------ 113

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           +   +V    +    + + +   Q  +++  GDS+  + L   L   Q+ R D     G 
Sbjct: 114 KPLIVVSYPEALFEKVITRKQLEQNTLKITKGDSLTLEFLNEVLFSYQFNRTDFVTEPGE 173

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           F V G  ++IF S   +  +R+  FGN++E I  F   +      +  I I  N      
Sbjct: 174 FSVRGGIVDIF-SFSNNEPYRIEFFGNEVESIRTFDVESQLSTAQLSQIIIIPNVENKES 232

Query: 389 RPTLNTAMKYI 399
                + ++YI
Sbjct: 233 DEVRQSFLEYI 243



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 19/196 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L+       +  +  T   +         +QV     E + D I    
Sbjct: 697 VLTLTATPIPRTLQFSLMAARDLSVINTPPPNR----YPIDSQVIPFSEEVIRDGIRYEI 752

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
           Q+G ++          +++   +       R    H ++   +  E +     G +DVLV
Sbjct: 753 QRGGQVFFMHNRVENIQEVAGMIQRLLPDARIAIGHGQMDGKKLEETMLAFMEGAYDVLV 812

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLD+P    + I +A   G     + L Q  GR  R+       +      ++
Sbjct: 813 ATTIIESGLDVPNANTIFINNAHNFGL----SDLHQMRGRVGRSNKKAFCYFITPPLIAM 868

Query: 698 QLAIDETTRRREKQLE 713
                +  R+R + + 
Sbjct: 869 ----SDDARKRIEAIA 880


>gi|162446907|ref|YP_001620039.1| transcription-repair coupling factor [Acholeplasma laidlawii PG-8A]
 gi|161985014|gb|ABX80663.1| transcription-repair coupling factor (superfamily II helicase)
           [Acholeplasma laidlawii PG-8A]
          Length = 1143

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/436 (15%), Positives = 146/436 (33%), Gaps = 55/436 (12%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           GV+ S     ++   +   +   V+ PN   A + Y    +    + V ++         
Sbjct: 25  GVSHSYLQTMLSLRYDISNKNIFVVLPNLYEAQKYYDTLSSIIDESKVLFY--------- 75

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE--RNDCIVVSSVSCIYGIGSVESYSQ 292
               P   T     +  + +    R    R LL+      I+ +    ++     E Y +
Sbjct: 76  ----PMDQTLTSMMALGSPEFKNERLFTLRKLLQADDKYIIITTQEGILHRQLKPEDYER 131

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
            + ++ +    +  +L   L+   Y+        G F + G  ++I+    +D  +R+  
Sbjct: 132 SVKKISVNQDYDLTDLTKKLIYDGYQFNYTVERPGEFSIRGSILDIYTHDYKD-PYRLDF 190

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG+ +E I  F   T + + ++ +I I   +           A++ I         +   
Sbjct: 191 FGDTLESIKTFDVQTQKSMNHITSIDIAPLNELFYTDELKEQALEKI--------SKYFS 242

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             +L E +  ++++  DL  +E      S+  Y  +       +   T+ ++     L+ 
Sbjct: 243 GFKLSEKE--DKKLETDLMHIEERKRMDSLSMYIEFFN-----DEVTTILDFSNPYDLIL 295

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           VD   + + + +     D    +   +    +      +     + N L      VS  P
Sbjct: 296 VDSYKMELNEETTY--QDLLTYSHTMQGEAFIGLNFKVKLKELLKKNHLSFQIYSVSDKP 353

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
            +                  G++D    +      +E +   IN     G  IL++  T 
Sbjct: 354 STD----------------LGVLD----VDPFVGHLEQLILFINEY--NGFNILISTKTM 391

Query: 593 RMAEDLTEYLYERNIR 608
              E + E+L    I 
Sbjct: 392 VSFERIKEHLTNHKIS 407



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 10/186 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G+    +I    L   PV+      Q   + + I+    +G 
Sbjct: 745 TLTLSATPIPRTLQMAMYGLKDLSMIDTPPLNRYPVQTYVVERQPALIKEAIDRELSRGG 804

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     L +     R  Y H ++      + +      +FD+LV   +
Sbjct: 805 QVFYLFNNTERMEAQVLKLQQLVPNARITYAHGKMTKNRIEDTLSRFVEKEFDILVSTTI 864

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I DAD  G  +    L Q  GR  R+     I YA  +    +   
Sbjct: 865 IETGVDIPNTNTLIIHDADHLGLAQ----LYQLRGRVGRSDR---IAYAYLMFDGYKDVN 917

Query: 702 DETTRR 707
           DE  +R
Sbjct: 918 DEAKKR 923


>gi|227357767|ref|ZP_03842116.1| transcription-repair coupling factor [Proteus mirabilis ATCC 29906]
 gi|227162096|gb|EEI47110.1| transcription-repair coupling factor [Proteus mirabilis ATCC 29906]
          Length = 1151

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 120/335 (35%), Gaps = 43/335 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           +   +  QL  G +TG+      A++I+      +++  +   A +L  E + F      
Sbjct: 11  VKQGDTRQL--GQLTGAACALECAEIIKRHAGLVVLVTRDMQNALRLQDEIRQFCD---- 64

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-NDCIVVSSVSCI 281
                      P   +   +T      S +++I   R S    +       +++   + +
Sbjct: 65  ----------YPVETLSDWETLPYDSFSPHQEIISNRLSTLYRIPSLLKGILILPVNTLM 114

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +  +   + +  G+ + +  L  +  +  Y+  +  +  G +   G  +++FP 
Sbjct: 115 QKVCPTDYLASHALIMSKGEQLSRDNLRKTFDEAGYRHVEQVLEHGEYATRGALLDLFPM 174

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E   +R+  F ++I+ +  F   T + +  VE IK+     + T       A++  + 
Sbjct: 175 GSE-FPYRIDFFDDEIDSLRTFDVDTQRTLTEVEQIKLLPAHEFPTDP----NAIELFRS 229

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + + R           E +R  + I    + +        IE +          +P   L
Sbjct: 230 QWRER----------FEVRRDPEHI---YQQVSKQVLPAGIEYWQPLFFS----QPLSNL 272

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F Y P+++L+   +      +    ++    R  +
Sbjct: 273 FAYFPQNTLIVTQDLQDCADK---FWQDINQRYES 304



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 67/182 (36%), Gaps = 15/182 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + I     +
Sbjct: 750 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLSVKTFVREYDDLV--VREAILRETLR 807

Query: 582 GLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E     L + + E  I +   H +++  E   ++ D    +F+VL+
Sbjct: 808 GGQVYYLYNDVENIEKARDRLAQLVPEARIGIG--HGQMRERELERVMNDFHHQRFNVLL 865

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 866 CTTIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAM 921

Query: 698 QL 699
             
Sbjct: 922 TK 923


>gi|197284762|ref|YP_002150634.1| transcription-repair coupling factor [Proteus mirabilis HI4320]
 gi|194682249|emb|CAR41979.1| transcription-repair coupling factor [Proteus mirabilis HI4320]
          Length = 1151

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 120/335 (35%), Gaps = 43/335 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           +   +  QL  G +TG+      A++I+      +++  +   A +L  E + F      
Sbjct: 11  VKQGDTRQL--GQLTGAACALECAEIIKRHAGLVVLVTRDMQNALRLQDEIRQFCD---- 64

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-NDCIVVSSVSCI 281
                      P   +   +T      S +++I   R S    +       +++   + +
Sbjct: 65  ----------YPVETLSDWETLPYDSFSPHQEIISNRLSTLYRIPSLLKGILILPVNTLM 114

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +  +   + +  G+ + +  L  +  +  Y+  +  +  G +   G  +++FP 
Sbjct: 115 QKVCPTDYLASHALIMSKGEQLSRDNLRKTFDEAGYRHVEQVLEHGEYATRGALLDLFPM 174

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E   +R+  F ++I+ +  F   T + +  VE IK+     + T       A++  + 
Sbjct: 175 GSE-FPYRIDFFDDEIDSLRTFDVDTQRTLTEVEQIKLLPAHEFPTDP----NAIELFRS 229

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + + R           E +R  + I    + +        IE +          +P   L
Sbjct: 230 QWRER----------FEVRRDPEHI---YQQVSKQVLPAGIEYWQPLFFS----QPLSNL 272

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           F Y P+++L+   +      +    ++    R  +
Sbjct: 273 FAYFPQNTLIVTQDLQDCADK---FWQDINQRYES 304



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 67/182 (36%), Gaps = 15/182 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  V + I     +
Sbjct: 750 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLSVKTFVREYDDLV--VREAILRETLR 807

Query: 582 GLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E     L + + E  I +   H +++  E   ++ D    +F+VL+
Sbjct: 808 GGQVYYLYNDVENIEKARDRLAQLVPEARIGIG--HGQMRERELERVMNDFHHQRFNVLL 865

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 866 CTTIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAM 921

Query: 698 QL 699
             
Sbjct: 922 TK 923


>gi|307544803|ref|YP_003897282.1| transcription-repair coupling factor [Halomonas elongata DSM 2581]
 gi|307216827|emb|CBV42097.1| K03723 transcription-repair coupling factor (superfamily II
           helicase) [Halomonas elongata DSM 2581]
          Length = 1148

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 75/479 (15%), Positives = 154/479 (32%), Gaps = 61/479 (12%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+  +   A +L  +   +                 P    P  +T      S ++ 
Sbjct: 41  PLLVITADTAAAQRLEGDLAFY--------------SRLPVLPFPDWETLPYDSFSPHQD 86

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           I   R    R L +    IV+  V+ +   +  V+  +  ++ L++G +++++     L 
Sbjct: 87  IVSSRLRTLRRLQDGEHGIVLVPVNTLMQRLSPVDYIAGRVMTLEVGTTLDREGFRERLS 146

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
           +  Y+  +     G + + G  I+++P   E +  R+ +F ++I+ +  F P T +    
Sbjct: 147 RAGYRAVETVYEPGEYALRGALIDLYPMGSE-MPVRIDLFDDEIDTLRRFDPDTQRSQDK 205

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
           VE + +     Y   R     A+   + E    L +++     L    L+          
Sbjct: 206 VERLDLLPAHEYSLSRD----AIACFR-EGFETLFDVDPRQCPLYMDALK---------- 250

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
                   +E Y          E   TLF+++ + + + +        +          R
Sbjct: 251 --GIPSPGLEQYLPLFF-----EETATLFDHLADTTRVALTPGVFEAAEHHWAAIE--SR 301

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
              L             RPL         P   V SA      +E          + P  
Sbjct: 302 YENL--------GVDPTRPLLPPH-RAFVPVPEVFSAIKRYPRVELTDDTAHPHALTPAV 352

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
              P V I +     E +    +       R+L    ++   E L E L   ++      
Sbjct: 353 RSVPEVTINARSK--EPLAALSHFLEDHATRVLFVAESRGRREALEEILAPLHLD----- 405

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
                L  ++       GK  + +    +  GL +    L  I + +  G +  ++   
Sbjct: 406 -----LPHVDDFSAFLDGKPRLAITEGTIDAGLWLESPNLAVISETELFGEVVRQSRRR 459



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 70/186 (37%), Gaps = 11/186 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      I +  I  T      + +++   Q ++  + + I     +G
Sbjct: 750 ILTLTATPIPRTLNMAMSGIRDLSIIAT-PPARRLSVKTFVQQRDESVIKEAILREILRG 808

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +  E   E + E     R    H ++       ++ D    +F+VLV   
Sbjct: 809 GQVYFLHNEVKTIETAAETVRELVPDARVGVAHGQLPERSLERVMSDFYHKRFNVLVCST 868

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           +++   
Sbjct: 869 IIETGIDVPSANTIVIQRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPRAMTR- 923

Query: 701 IDETTR 706
            D T R
Sbjct: 924 -DATKR 928



 Score = 39.3 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT---MAKVIEAMQR 194
             F     +  + DQ  AI  +L  + + R   +++ G  G GKT      A +     R
Sbjct: 590 ARFAASFPFEETPDQRVAIQSVLADMTAPRPMDRVVCGDVGFGKTEVAMRAAFLAVHSGR 649

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAV 222
             +V+ P  +LA Q Y  F++ F   AV
Sbjct: 650 QVVVLVPTTLLARQHYENFRDRFADTAV 677


>gi|90579501|ref|ZP_01235310.1| putative transcription-repair coupling factor [Vibrio angustum S14]
 gi|90439075|gb|EAS64257.1| putative transcription-repair coupling factor [Vibrio angustum S14]
          Length = 1153

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 109/291 (37%), Gaps = 38/291 (13%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G+    + A+V  + + P + + P+   A +L  E   F     V  F            
Sbjct: 26  GAALALSFAEVAASHKGPVLAVVPDTQTALKLQPEITQFC-DVEVNVF------------ 72

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMIVQ 296
            P  +T      S ++ I   R +    +  +   I++  +S +    +   +  Q  + 
Sbjct: 73  -PDWETLPYDNFSPHQDIISERLARLYKMPSQKSGIILVPISTLLQRQTPREFIHQHALI 131

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           +K GD +  ++L   L    Y+  D  +  G +   G  +++FP   +   +R+  F ++
Sbjct: 132 VKAGDRMSLEKLRLQLEVSGYRHVDQVMEHGEYASRGSLLDLFPMGSQS-PYRIDFFDDE 190

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           ++ I +F P   +    +++I +     +    PT   A++  +   + R     +   +
Sbjct: 191 VDSIRQFDPDNQRSTGEIDSIDLLPAHEF----PTDEIAVENFRMRWRERFEARREPESI 246

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
              Q++ +R                IE +          +   TLF+Y+P+
Sbjct: 247 --YQQVSKRT-----------WPAGIEYWQPLFF-----DKTETLFDYLPD 279



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 90/245 (36%), Gaps = 15/245 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q +D  + + +     +G
Sbjct: 757 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSDDAVIREAVLREISRG 815

Query: 583 LRI--LLTVLT--KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++  L   +   ++  EDL + + E  I   + H +++  E  +I+ D    +F+VLV 
Sbjct: 816 GQVYFLHNEVDSIEKTTEDLAKLIPEARIT--FAHGQMRERELEKIMGDFYHQRFNVLVC 873

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K + 
Sbjct: 874 TTIIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKRMT 929

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
              D   R        +        +   +I    + +  E +        +  + + ++
Sbjct: 930 K--DAVKRLEAISSLEDLGAGFTLATHDLEIRGAGELLGDEQSGQIQSVGFSLFMEMLEQ 987

Query: 759 KGKAH 763
             +A 
Sbjct: 988 AVEAL 992


>gi|89075823|ref|ZP_01162207.1| putative transcription-repair coupling factor [Photobacterium sp.
           SKA34]
 gi|89048444|gb|EAR54020.1| putative transcription-repair coupling factor [Photobacterium sp.
           SKA34]
          Length = 1153

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 109/291 (37%), Gaps = 38/291 (13%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G+    + A+V  + + P + + P+   A +L  E   F     V  F            
Sbjct: 26  GAALALSFAEVAASHKGPVLAVVPDTQTALKLQPEITQFC-DVEVNVF------------ 72

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY-SQMIVQ 296
            P  +T      S ++ I   R +    +  +   I++  +S +    +   +  Q  + 
Sbjct: 73  -PDWETLPYDNFSPHQDIISERLARLYKMPSQKSGIILVPISTLLQRQTPREFIHQHALI 131

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           +K GD +  ++L   L    Y+  D  +  G +   G  +++FP   +   +R+  F ++
Sbjct: 132 VKAGDRMSLEKLRLQLEVSGYRHVDQVMEHGEYASRGSLLDLFPMGSQS-PYRIDFFDDE 190

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           ++ I +F P   +    +++I +     +    PT   A++  +   + R     +   +
Sbjct: 191 VDSIRQFDPDNQRSTGEIDSIDLLPAHEF----PTDEIAVENFRMRWRERFEARREPESI 246

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
              Q++ +R                IE +          +   TLF+Y+P+
Sbjct: 247 --YQQVSKRT-----------WPAGIEYWQPLFF-----DKTETLFDYLPD 279



 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 90/245 (36%), Gaps = 15/245 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        I++   Q +D  + + I     +G
Sbjct: 757 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-IKTFVRQSDDAVIREAILREISRG 815

Query: 583 LRI--LLTVLT--KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++  L   +   ++  EDL + + E  I   + H +++  E  +I+ D    +F+VLV 
Sbjct: 816 GQVYFLHNEVDSIEKTTEDLAKLIPEARIT--FAHGQMRERELEKIMGDFYHQRFNVLVC 873

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + +  AD  G  +    L Q  GR  R+ +           K + 
Sbjct: 874 TTIIETGIDVPTANTIIMDRADNLGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKRMT 929

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
              D   R        +        +   +I    + +  E +        +  + + ++
Sbjct: 930 K--DAVKRLEAISSLEDLGAGFTLATHDLEIRGAGELLGDEQSGQIQSVGFSLFMEMLEQ 987

Query: 759 KGKAH 763
             +A 
Sbjct: 988 AVEAL 992


>gi|189350744|ref|YP_001946372.1| transcription-repair coupling factor [Burkholderia multivorans ATCC
           17616]
 gi|189334766|dbj|BAG43836.1| transcription-repair coupling factor [Burkholderia multivorans ATCC
           17616]
          Length = 1185

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/453 (15%), Positives = 147/453 (32%), Gaps = 61/453 (13%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFF 217
           +  +   ++     G  GS     +A+ +   +       V+  N + A +L  E   F 
Sbjct: 42  VARVKPGQRFAFD-GTHGSADALAIARYLADNREHVPLLAVICANAVDAQRLSQEIGYFA 100

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVS 276
           P   V               +P  +T      S ++ +   R +    L E     ++V 
Sbjct: 101 PDARVRL-------------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVP 147

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + + +Y +      +        G+ +++ +L S L    Y+     +  G + V G  I
Sbjct: 148 ATTALYRMPPASFMAAYTFAFAQGERLDEAKLKSQLTLAGYEHVSQVVRPGEYCVRGSLI 207

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++FP     + +R+ +F + ++ I  F P T + +  V  +++     +           
Sbjct: 208 DLFPM-GSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA----- 261

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
              +   + R  E  +                  + +        IE Y          +
Sbjct: 262 ---RTAFRSRWRETFEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----D 304

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TLF Y+P+D+ L        +      +  D  ++     +    P           
Sbjct: 305 ETATLFHYLPQDAHLVFAGD---LDASIRRFTADTKQRYAFLSHDRERP----------- 350

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
               L P  + +S     + L +    +V       G      E+ +     +D    + 
Sbjct: 351 ---ILEPQRLFLS-DDDFFTLAKPFARLVLPAQPAGGWATALPEL-TVDRHADDPLAALR 405

Query: 577 LAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIR 608
              +  G R+LLTV +    E + + L E ++R
Sbjct: 406 TFVETSGKRVLLTVESAGRRETILQLLAEHHLR 438



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 784 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 841

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L E     R +  H ++   E   ++RD    + +VL+  
Sbjct: 842 GGQVYFLHNEVETIENRKAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 901

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +++  
Sbjct: 902 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQALTK 957

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 958 ---QAQRRLEAIQQME 970


>gi|254252138|ref|ZP_04945456.1| Transcription-repair coupling factor [Burkholderia dolosa AUO158]
 gi|124894747|gb|EAY68627.1| Transcription-repair coupling factor [Burkholderia dolosa AUO158]
          Length = 1164

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/439 (15%), Positives = 142/439 (32%), Gaps = 60/439 (13%)

Query: 175 GVTGSGKTFTMAKVIE--AMQRPAI-VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G  GS     +A+ +       P + V+  N + A +L  E   F P   V         
Sbjct: 34  GAHGSADALAIARYLADNRADVPLLAVICANAVDAQRLSQEIGYFSPDARVRL------- 86

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESY 290
                 +P  +T      S ++ +   R +    L E     ++V + + +Y +      
Sbjct: 87  ------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFM 140

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +        G+ ++  +L + L    Y+     +  G + V G  I+++P     + +R+
Sbjct: 141 AAYTFAFAQGERLDDAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLYPM-GSPLPYRI 199

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F + ++ I  F P T + +  V  +++     +                    R    
Sbjct: 200 DLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDE--------------AARTAFR 245

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +     E       I  D   +        IE Y          +   TLF Y+P+++ 
Sbjct: 246 SRWRETFEGDPSRATIYKD---IGNGVPSAGIEYYLPLFF-----DETATLFHYLPQNAH 297

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
           L        +      +  D  ++     +    P               L P  + +S 
Sbjct: 298 LVFAGD---LDAAIRRFTADTKQRYAFLAHDRERP--------------ILEPQRLFLS- 339

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ-QGLRILLTV 589
               + L +    +V       G      E+ +     +D    +    +  G R+LLTV
Sbjct: 340 DEDFFTLAKPFARVVLPAQPAGGWATALPEL-TVDRHADDPLAALRTFVESSGKRVLLTV 398

Query: 590 LTKRMAEDLTEYLYERNIR 608
            +    E + + L E ++R
Sbjct: 399 ESAGRRETILQLLAEHHLR 417



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 763 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 820

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L E     R +  H ++   E   ++RD    + +VL+  
Sbjct: 821 GGQVYFLHNEVETIENRKAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 880

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +S+  
Sbjct: 881 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQSLTK 936

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 937 ---QAQRRLEAIQQME 949


>gi|217421496|ref|ZP_03453000.1| transcription-repair coupling factor [Burkholderia pseudomallei
           576]
 gi|217395238|gb|EEC35256.1| transcription-repair coupling factor [Burkholderia pseudomallei
           576]
          Length = 1189

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 105/331 (31%), Gaps = 48/331 (14%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G  GS     +A+ + A +       V+  N + A +L  E   F P   V         
Sbjct: 57  GTHGSADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELAYFAPDARVRV------- 109

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESY 290
                 +P  +T      S ++ +   R +    L E     ++V + + +Y +      
Sbjct: 110 ------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFL 163

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +        G+ +++ +L + L    Y+     +  G + V G  I++FP     + +R+
Sbjct: 164 AAYTFSFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPM-GSPLPYRI 222

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F + ++ I  F P T + +  V  +++     +              +   + R  E 
Sbjct: 223 DLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA--------RTAFRSRWRET 274

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +                  + +        IE Y          +   TLF Y+PE + 
Sbjct: 275 FEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----DETATLFHYLPERAQ 320

Query: 471 LFVDESHVT--------IPQISGMYRGDFHR 493
           L                  Q       D  R
Sbjct: 321 LVFTGDLDAAIKRFTADTKQRHAFLSHDRER 351



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 786 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 843

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L E     R +  H ++   E   ++RD    + +VL+  
Sbjct: 844 GGQVYFLHNEVETIENRKAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 903

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +++  
Sbjct: 904 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQALTK 959

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 960 ---QAQRRLEAIQQME 972


>gi|90419666|ref|ZP_01227576.1| transcription-repair coupling factor [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336603|gb|EAS50344.1| transcription-repair coupling factor [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 1121

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 92/494 (18%), Positives = 175/494 (35%), Gaps = 68/494 (13%)

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           +    A L    +   P   V    ++ D    +   P  D    + S++   I+ +R +
Sbjct: 3   DGNRVAALEDALRFVAPDLPVLTLPAW-DCLPYDRVGPSGDAAARRLSAM-TAINALRLA 60

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
             R+L      I+ ++ + +  +   +  ++ ++  K G  +  ++++ +L +  ++R  
Sbjct: 61  PHRAL------ILTTANALLQKMPPADVLAEEMIAAKAGHRIAMEDIVRALQRGGFERVA 114

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
               RG F V G  +++F +  ED   R+  FG+ +E I  F P + + IR +++ ++  
Sbjct: 115 TVRERGEFAVRGGILDLF-APGEDEPVRLDFFGDTLETIRAFDPASQRTIRQLKSFELAP 173

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S       T++            R   +++ G  L +  L   I+              
Sbjct: 174 VSEVTLREETISRF----------RGNYVKRFGAPLRSDALYSSIS-------EGKRFSG 216

Query: 442 IENYSRYLTGRNPGEPPPTLFEY---IPE--DSLLF--VDESHVTIP-QISGMYRGDFHR 493
           +E++          E   TLF+Y    P   D L    V E   TI        RG    
Sbjct: 217 MEHWLPLFY-----EKLDTLFDYCAGFPMVLDHLTLESVAERRTTIEDHYDARKRGAGES 271

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT--IVVSATPGSWELEQCQGIIVEQIIRP 551
            A    Y    P   D+  L  +E      +T  I +SA   S         I     R 
Sbjct: 272 SAEAVPYN---PVEPDDLYLSQDELAGGIASTDPIRLSAYAASDAANHAVFNIDITRGRS 328

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
                   ++   +  V+     I      G R++L   T+   E LT+ + E  +    
Sbjct: 329 FAAERASGDVNVFQAAVD----HIGRLRAGGKRVVLAAWTEGSRERLTQVVEEHGLE--- 381

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLL--REGLDIPECGLVAILDADKEGFLRSKT 669
               +K  + ++ + +        LV   +L    G + P+  L  + + D  G      
Sbjct: 382 ---NIKAADSLKKVNEAPKN----LVMTAVLGVEAGFETPD--LAIVGEQDILG------ 426

Query: 670 SLIQTIGRAARNVN 683
             +   GR  R  N
Sbjct: 427 DRLVRRGRKKRAAN 440



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 74/191 (38%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 720 HVLTLSATPIPRTLQLALTGVRELSLITTAPVDRMA-VRTFVSPFDPLVVRETLLRERYR 778

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +            D+  +L      ++V   H ++   E  +I+     G++DVL+  
Sbjct: 779 GGQSFYVCPRVSDLADVKAFLDAEVPELKVAVAHGQMAATELDDIMNAFYEGQYDVLLST 838

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SKV  YA     + + 
Sbjct: 839 TIVESGLDIPSANTMIVHRADMFGLSQ----LYQLRGRVGR---SKVRAYALLTIPANKT 891

Query: 700 AIDETTRRREK 710
                 RR + 
Sbjct: 892 PTKGADRRLKV 902


>gi|148270474|ref|YP_001244934.1| transcription-repair coupling factor [Thermotoga petrophila RKU-1]
 gi|147736018|gb|ABQ47358.1| transcription-repair coupling factor [Thermotoga petrophila RKU-1]
          Length = 893

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 90/497 (18%), Positives = 171/497 (34%), Gaps = 80/497 (16%)

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIV 295
           + P  D    ++  ++ +I   R      LL   +  +V+++  +   +   +   +  +
Sbjct: 20  FYPSRDVLPLEDVVLSPEIKGKRIEILWKLLSGENLKIVTTLKALTEKVFPPDFLRENSL 79

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +     +        LV+  Y+R       G F + GD ++I+ S   D   R+ +FG+
Sbjct: 80  MITRSTKLALS--PEKLVEMGYERVFTVQNVGEFAIRGDIVDIY-SPGNDFPVRIELFGD 136

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR---------------------PTLNT 394
           +IEEI  F   T +  ++V+   I     +                              
Sbjct: 137 EIEEIRFFNVDTQRSFQSVDRTLILPFVDFYGESTLLDFVKTEVRFVCEDLQKVLDEYRK 196

Query: 395 AMKYIKEELKMRLIELEKEG------RLLEA--QRLEQRITY-------DLEMLETTGSC 439
             K +++ LK R  +   E       + +E     L  RI         D++ +E  G  
Sbjct: 197 FRKEMRDLLKERYNDFFDERVVEVVLKNVEKGSAPLSTRIEKKESLPILDVDEIEEGGLV 256

Query: 440 QSIENYSRYLTGRNP-----GEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDF 491
              E+      G        GE      +Y+    ED++L+V      I ++        
Sbjct: 257 VHREHGIAIFEGVVRLKGVLGER-----DYLKLKYEDAVLYV--PIEKIDRVHKYIGDPS 309

Query: 492 HRKATLAEYGF---RLPSCMDNRPLRFEEWNC--LRPTTIVVSATPGSWELEQCQGIIVE 546
             K      G     L    ++   +  E     +R   I   + PG  ELE+       
Sbjct: 310 QVKLDRMNRGKWKQTLKKVREDIEKKIRELVELYMRRQEIQGLSLPGDPELEEKFAESFP 369

Query: 547 QIIRPT------GLVDPPVEIRSAR---------TQVEDVYDEINLAAQQGLRILLTVLT 591
            I  P        ++      +             + E        A   G ++ + V T
Sbjct: 370 YIETPDQQQSIEEVLSDLASEKPMDRLLCGDAGVGKTEVALRAAFRAVASGKQVAVLVPT 429

Query: 592 ----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
               ++  E+  E +    ++V  + S     E+ EII  L+ G+ D+++G + LL E +
Sbjct: 430 TVLARQHYENFKERMEPFGVKVELLDSSRTPREKKEIIEKLKKGEIDIIIGTHSLLNERI 489

Query: 647 DIPECGLVAILDADKEG 663
           +  + GLV I +  K G
Sbjct: 490 EFSDLGLVIIDEEQKFG 506



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 14/195 (7%)

Query: 516 EEWNCLR--PTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVY 572
           E +  LR     + +SATP    L      + +  +I        PV +  A    + V 
Sbjct: 511 ERFKKLRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVYVYVAEYSDDLVK 570

Query: 573 DEINLAAQQGLRILLT----VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             +     +G +++           + E L     E  I V   H ++       I+ + 
Sbjct: 571 GAVIREINRGGQVIYVHNRVEELPEVFEKLKRMFPELEIAVA--HGKMSRRTMERIVHEF 628

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G  DVL+   ++  G+DIP    + + DA + G  +    L Q  GR  R+ + +   
Sbjct: 629 YRGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYGLSQ----LYQLRGRVGRS-DRRAFA 683

Query: 689 YADTITKSIQLAIDE 703
           Y      + + A++ 
Sbjct: 684 YFLYPKGTPRSALER 698


>gi|238022627|ref|ZP_04603053.1| hypothetical protein GCWU000324_02536 [Kingella oralis ATCC 51147]
 gi|237865830|gb|EEP66966.1| hypothetical protein GCWU000324_02536 [Kingella oralis ATCC 51147]
          Length = 1156

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/321 (18%), Positives = 105/321 (32%), Gaps = 39/321 (12%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
            GS   F    +     +  IV  P+   A +L + ++ F P +    F+  ++    E 
Sbjct: 20  AGSLPYFLTQNLPPETLK--IVFTPDAETALRLQTAWQFFRPEDN-ALFLPDWETLPYER 76

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLER-NDCIVVSSVSCIYGIGSVESYSQMIV 295
           + P  D   E            R S    L     D + V   + +  +           
Sbjct: 77  FSPHQDLVSE------------RLSVLWQLKNGLADALFVPVATAMQRLAPAPFLLGRTF 124

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            LK G  ++   L  +LV+  Y      +  G F V G  +++FP    D  +R+ +F +
Sbjct: 125 WLKTGQRLDIAALRQNLVEAGYSAVSNVVAGGEFAVRGGIVDLFP-TGSDTPYRIDLFDD 183

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ I  F P + + I  V  I++     + T            +EE+            
Sbjct: 184 EIDSIKTFDPDSQRTIAPVSEIRLLPAHEFPTDDAAQKIFRSRFREEV------------ 231

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL-LFVD 474
                          + +        +E Y         G    TLF+Y+  D+L + V 
Sbjct: 232 -----NGNPNDAAVYKAVSNGQFGAGVEYYLPLF--FEDGC--ATLFDYLGADALAVCVG 282

Query: 475 ESHVTIPQISGMYRGDFHRKA 495
           + H    +     +  F    
Sbjct: 283 DVHAEARRFEAEVKSRFQMAQ 303



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525 TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
            + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 763 ILTLTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 819

Query: 581 QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 820 RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 877

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 878 LCSTIIETGIDIPNANTIIINRADKFGIAQ----LHQLRGRVGRSHHQAYAYL------- 926

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                  + P+ + +   + +D I   D        A  ++ I 
Sbjct: 927 -----------------------LTPEYISKDAEKRLDAIAAADELGAGFSLAMQDLEIR 963

Query: 750 AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                L + +    ++   +L  +M   A  +L
Sbjct: 964 GAGEILGEGQSGEMVQVGFTLYTEMLKQAVRDL 996


>gi|42525214|ref|NP_970594.1| transcription-repair coupling factor [Bdellovibrio bacteriovorus
           HD100]
 gi|39577425|emb|CAE81248.1| transcription-repair coupling factor [Bdellovibrio bacteriovorus
           HD100]
          Length = 1172

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/505 (13%), Positives = 152/505 (30%), Gaps = 61/505 (12%)

Query: 176 VTGSGKTFTMAKVIEAM------QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
           VTG+     +A  +           P +V+  +   A  L +  + F P           
Sbjct: 27  VTGAASPLALAYFLSQTYSKKINGLPHLVVVGSHREAVTLQALLEFFDPSRQ-------- 78

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQI--DRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
                   +P  D         N Q+  DR+R  A     +  +  + S  + +     V
Sbjct: 79  -----SHILPAFDVSPYSGLYPNTQVVADRVRFLAKAQSAKAGEIFISSVDALMQKTLPV 133

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           +        ++ GD +  + L        Y    +   +G F V G  ++I+P   E+  
Sbjct: 134 KILKDHSKTVRAGDELP-ENLSDYFSSLGYTAAPMVEDKGQFAVRGGIVDIYPP-TENQP 191

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+ +FG+ +E +  F     +    +++  +      +    T    ++ ++  L+ R 
Sbjct: 192 VRMDLFGDQVESLRHFSVADQRSSDEIQSFVLTPAREVLYRDETHERLLQRVRASLEGR- 250

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
               K  +    + L   +  +            IE    Y  G      P    ++ P 
Sbjct: 251 ----KVDKAEAEETLRSLVLKNA--------FPGIEFLLPYFYGELA--TPA---DHFPG 293

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE---WNCLR-- 522
              L+  +          M+           +   R       RP   +    +  L   
Sbjct: 294 ALNLWFLDPVEISRCADEMWAE--------LKADHRTSDAHVIRPELEDIYVNFEALAYP 345

Query: 523 ---PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
                    S      E      +     +                  ++   ++++   
Sbjct: 346 LNSRQVYFSSLEYFDEENSDDSRVEYRTAMTQDFTNLALANAVGTEQWLQAATNKLHRWR 405

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL-VG 638
            +G RI ++   +   + L+    +  ++     S+     R +     +  + +++ + 
Sbjct: 406 DEGYRIFVSTKNQSHIDRLSLVFEKLELKAVRTSSD---EYRWDSWLQEQDREQNIVHIV 462

Query: 639 INLLREGLDIPECGLVAILDADKEG 663
              L E L + E  ++ + D D  G
Sbjct: 463 PRYLAESLRLEEEKIIFLRDEDFYG 487



 Score = 45.5 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 66/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
           T+ +SATP    L      I +  +  T  VD        RT V     E +   I    
Sbjct: 785 TLTLSATPIPRTLNMALVGIRDLSLINTAPVDRL----PTRTFVTKFDPETIRKAITAEI 840

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++            L + + +     R    H +++  E  + +      + DVLV
Sbjct: 841 SRGGQVYFIHNRIESIYGLVDEIRQIVPEARIRVAHGQMEEHELEKAMLAFFHHEIDVLV 900

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D+P    + I  A   G  +    L Q  GR  R+               +
Sbjct: 901 CTAIVESGMDVPRANTMFIDTAHLFGLSQ----LYQLRGRVGRSKTRAYCYLMMPRNHKL 956

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
                E   R +  ++ N    
Sbjct: 957 DK---EQQERLKI-IQENTALG 974


>gi|186475762|ref|YP_001857232.1| transcription-repair coupling factor [Burkholderia phymatum STM815]
 gi|184192221|gb|ACC70186.1| transcription-repair coupling factor [Burkholderia phymatum STM815]
          Length = 1164

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 114/346 (32%), Gaps = 49/346 (14%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAK--VIEAMQRPAIVMAP-NKILAAQLYSEFKNFF 217
           +  + + ++  +  G  GS     +A+       Q P + +   + + A +L  E   F 
Sbjct: 16  VALVKAGQRF-VFDGTHGSSDALLIARYHTAHKAQMPLLAVVCASAVDAQRLSQELAFFA 74

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVS 276
           P   +               +P  +T      S ++ +   R +    L E     ++V 
Sbjct: 75  PDARIRL-------------LPDWETLPYDSFSPHQDLVSERLATLHDLGEGRCDILLVP 121

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + + +Y +      +        G+ +++ +L + L    Y+     +  G + V G  I
Sbjct: 122 ATTALYRMPPASFMAAYTFSFSQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLI 181

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++FP     + +R+ +F + ++ I  F P + + +  V+ +++     +           
Sbjct: 182 DLFPM-GSPLPYRIDLFDDQVDSIRAFDPDSQRSLYPVKDVRLLPGREFPFDE------- 233

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
                    R     +   + E       I  D   +        IE Y          E
Sbjct: 234 -------AARTAFRSRWREVFEGDPSRASIYKD---IGNGVPSAGIEYYLPLFF-----E 278

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
              TLF Y+PE + L        +  +    R           YGF
Sbjct: 279 ETATLFHYLPEAAQLVF------VGDLDAAIRRFTADTKQR--YGF 316



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 24/150 (16%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            QV  +++E+     +          ++M E L     E  I V   H ++   E   ++
Sbjct: 817 GQVYFLHNEVETIENR----------RQMLEALV---PEARIAVA--HGQMHERELERVM 861

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RD    + +VL+   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +  
Sbjct: 862 RDFVAQRANVLLCTTIIETGIDVPSANTILIHRADKFGLAQ----LHQLRGRVGRSHHQ- 916

Query: 686 VILYADTITKSIQLAIDETTRRRE--KQLE 713
              Y+  +    Q    +  RR E  +Q+E
Sbjct: 917 --AYSYLLVHDPQGLTKQAQRRLEAIQQME 944


>gi|329897463|ref|ZP_08272106.1| Transcription-repair coupling factor [gamma proteobacterium
           IMCC3088]
 gi|328921160|gb|EGG28563.1| Transcription-repair coupling factor [gamma proteobacterium
           IMCC3088]
          Length = 1150

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/440 (16%), Positives = 134/440 (30%), Gaps = 59/440 (13%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           GS +   +A++    +R  +V   +   A  L  E   F            ++    + +
Sbjct: 26  GSAEARCVAELASHHER-IVVFVSDTSNAIALERELPFFLTQETELLSFPDWEILPYDHF 84

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
            P  D   E+  +    + R+   A          ++V   + ++ +  ++  +   +QL
Sbjct: 85  SPHQDIVSERLRT----LYRLPKMA-------RGILIVPVSTAMHRLPPIDYIASNALQL 133

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
            IGD  +       L+   Y   D     G F + G  +++FP     V +R+  F  D+
Sbjct: 134 GIGDEFDAVAFRQQLLNAGYVAVDTVYEHGEFALRGSILDVFPMGSS-VPYRIDTFDADV 192

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           + I  F P T + I  +E I +     +   +  LN  M                     
Sbjct: 193 DTIRTFDPETQRTIEAIERIDLLPAREFPLTKGALNQFMMN-----------------WY 235

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESH 477
           EA  ++         +         E +      +       +LF+++PE + L     H
Sbjct: 236 EAFDVDHDACPIYREVLAGRVPGGTEYFLPLFFKQT-----ASLFDFLPEGTALVTVGDH 290

Query: 478 VTIPQISGMYRGDFHRKATLAEYGF-----RLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
               Q       + H      EYG       LP      P+        R  T+ +   P
Sbjct: 291 HQSSQRFWQDVVERHE-----EYGIDPRRPLLPPQRIILPVDEFYGQIKRFATLELRRNP 345

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
            +        +      +P                VE +   I          LL   T 
Sbjct: 346 DA-------PVHFNTDSKPLPSFISEASTSP----VEPLKRWIETHCAG---TLLVAETA 391

Query: 593 RMAEDLTEYLYERNIRVRYM 612
              E L + L    ++  Y 
Sbjct: 392 GRREALIDALQRIGLQAEYF 411



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 61/178 (34%), Gaps = 7/178 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I         ++          + + I     +G 
Sbjct: 752 ILTLTATPIPRTLNMALGGMRDLSVIATPPAKRLSIKTFVREHNTSMIKEAILRETLRGG 811

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  E+    L     +++V   H +    E   I+ D    +F +LV   +
Sbjct: 812 QVYYLHNEVKTIEETARKLQAMVPDLKVAVAHGQQHETELERIMSDFYHQRFHILVCTTI 871

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+D+P    + +  AD+ G  +    L Q  GR  R+ +             +  
Sbjct: 872 IETGIDVPNANTIIMDRADRLGLAQ----LHQLRGRVGRSHHQAYAYLLCPPRSGLTK 925


>gi|296157812|ref|ZP_06840646.1| transcription-repair coupling factor [Burkholderia sp. Ch1-1]
 gi|295892058|gb|EFG71842.1| transcription-repair coupling factor [Burkholderia sp. Ch1-1]
          Length = 1160

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 82/534 (15%), Positives = 170/534 (31%), Gaps = 81/534 (15%)

Query: 144 QTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK--VIEAMQRPAIVMAP 201
            + Y P    P A+      + + ++     G  GS     +A+  +    + P + +  
Sbjct: 7   SSQYSP----PVAL------VKAGQRFAFD-GTHGSSDALLIARYHLAYREKVPLLAVVC 55

Query: 202 -NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            + + A +L  E   F P   V               +P  +T      S ++ +   R 
Sbjct: 56  ESAVDAQRLAQEIGFFAPEARVRL-------------LPDWETLPYDTFSPHQDLVSERL 102

Query: 261 SATRSLLERND-CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +    L E     ++V + + +Y +      +        G+ +++ +L S L    Y+ 
Sbjct: 103 ATLHDLGEGRCDILLVPATTALYRMPPASFLAAYTFSFSQGERLDEAKLKSQLTLAGYEH 162

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
               +  G + V G  ++++P     + +R+ +F + ++ I  F P T + +  V+ +++
Sbjct: 163 VSQVVRPGEYCVRGSLLDLYPM-GSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVKDVRL 221

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
                +                    R     +     E       I  D   +  +   
Sbjct: 222 LPGREFPFDE--------------AARTAFRSRWRETFEGDPSRASIYKD---IGNSVPS 264

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             IE Y          +   TLF Y+PE + L        +      +  D  ++     
Sbjct: 265 AGIEYYLPLFF-----DDTATLFHYLPEGAQLAFVGD---LDAAIRRFTNDTKQRYNFLS 316

Query: 500 YGFRLPSCMDNR-PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
           +    P     R  L  E++  L      + A P +        +    I R        
Sbjct: 317 HDRDRPILEPQRLFLSDEDFFTLAKPFARL-ALPANAGGGWSTPLPNLAIDRH------- 368

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
                A   V  +   ++       R+L    +    E L + L + ++R          
Sbjct: 369 -----AEDPVAALRVYLDTTP---NRVLFATESAGRRETLLQLLADNHLR---------- 410

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
               +  +D  LG     +G+  L  G  +P  G+  I + +  G L  +    
Sbjct: 411 PASSDSFQDWLLGDSRFSLGVAPLANGFAVPVDGIAIITETELYGPLARRAGRR 464



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 756 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDSV--IREAMLRELKR 813

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+  + L       R    H ++   E   ++RD    + +VL+  
Sbjct: 814 GGQVYFLHNEVETIENRRQMLETLVPEARIAVAHGQMHERELERVMRDFVAQRANVLLCT 873

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     Y+  +    Q 
Sbjct: 874 TIIETGIDVPTANTILIHRADKFGLAQ----LHQLRGRVGRSHHQ---AYSYLLVHDPQG 926

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 927 LTKQAQRRLEAIQQME 942


>gi|327403557|ref|YP_004344395.1| transcription-repair coupling factor [Fluviicola taffensis DSM
           16823]
 gi|327319065|gb|AEA43557.1| transcription-repair coupling factor [Fluviicola taffensis DSM
           16823]
          Length = 1113

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/389 (14%), Positives = 124/389 (31%), Gaps = 55/389 (14%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G+ GS K+  +A V E +    + +  +K  AA   ++ +   P N   YF         
Sbjct: 34  GLIGSSKSIAVASVCEQVPGNHLFVLEDKESAAYFLNDLEQLLPDNKHIYFY-------- 85

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQM 293
               P +     +    +      R      +    +  VV+    ++  + + +  S+ 
Sbjct: 86  ----PASYRTPYQLEETDNANVVARAEVLEKINTGKNTWVVTYPQALFERVPTQKRLSEN 141

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            ++++ G +         L++  ++R D     G F + G  ++IF S   D  +RV  F
Sbjct: 142 TMRVERGKTYSIDFFNELLLEYGFERVDFVYEPGQFSIRGGIVDIF-SFSNDQPFRVEFF 200

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI-------------- 399
           G++++ I  F P++   I       +  N           T +++I              
Sbjct: 201 GDEVDSIRTFDPVSQLSINTHTHFSVVPNVQRQLVLNGNGTFLEFIGKQTTIWLASNDLV 260

Query: 400 ----KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR-YLTGRNP 454
               +++ +  +   +   +      L   +       +      SI      Y    + 
Sbjct: 261 KAALEKDYEKAVKVYDSLPKNTIKHSLPSELYMHPSDWKEQLPVHSIVEIGPEYTFKASE 320

Query: 455 GEPPPTL--------FEYIPED---------SLLFVDESHVTIPQISGMYRG-----DFH 492
                TL        F+ + ED         + +        I ++  ++       +F 
Sbjct: 321 TITFETLHQPTFNKDFDLLKEDLLARRKAGATNMIFSNQPKQIERLYQIFEDIGAEVEFE 380

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
              +    GF +PS         + +   
Sbjct: 381 PMNSALHEGFIIPSLKLVCYTDHQIFERY 409



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+    G     II        PV         E + D I+    +G 
Sbjct: 707 TLTLTATPIPRTLQFSLMGARDLSIINTPPPNRQPVLTEVITFNEEAIRDAISYEVSRGG 766

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   +      +RV   H ++   +  +++ D   G++DVL+   +
Sbjct: 767 QVYFVNNRLANIKEIAGMISRLCPGVRVAIGHGQMDGKQLEKVMMDFIQGEYDVLIATTI 826

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I D+   G     + L Q  GR  R+       +   I++ I L  
Sbjct: 827 IESGIDISNANTIIINDSHMFGL----SDLHQLRGRVGRSNKKG---FCYLISQPISLLT 879

Query: 702 DETTRRRE 709
            E  +R E
Sbjct: 880 SEARKRLE 887


>gi|183599469|ref|ZP_02960962.1| hypothetical protein PROSTU_02948 [Providencia stuartii ATCC 25827]
 gi|188021716|gb|EDU59756.1| hypothetical protein PROSTU_02948 [Providencia stuartii ATCC 25827]
          Length = 1148

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 117/319 (36%), Gaps = 37/319 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+      A++IE  Q P +++  +     +L  E +  F    +E    +       
Sbjct: 22  LIGAAGALECAEMIERHQGPVVIITRDMQNTLRLRDEIQQ-FTQLPIETLSDW------- 73

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
                 +T      S +++I   R S    L   +   +++   + +  +   E  +   
Sbjct: 74  ------ETLPYDNFSPHQEIISHRLSTLYRLPTMQKGVLILPVNTLMQKVCPSEFLASHA 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +  GD + +  L   L K  Y+  +  +  G +   G  ++++P     + +R+  F 
Sbjct: 128 LVMAKGDKLSRDNLRDELDKAGYRHVEQVLEHGEYATRGALLDLYPMGSA-LPYRIDFFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ +  F   + + +  VE+I +     + T +     A++  + + + R        
Sbjct: 187 DEIDSLRTFDVDSQRTLEEVESINLLPAHEFPTDKD----AIERFRSQWRER-------- 234

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
              E +R  + I    + +        IE +          +P P+LF+Y+P ++L    
Sbjct: 235 --FEVRRDPEHI---YQQVSKKTLPTGIEYWQPLFFS----QPLPSLFDYLPTNTLFISQ 285

Query: 475 ESHVTIPQISGMYRGDFHR 493
                  +     +  F  
Sbjct: 286 HYQEAAERFQSDTQQRFES 304



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 68/177 (38%), Gaps = 9/177 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  I  T        +++   Q +D+   + I     +G
Sbjct: 750 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-VKTFVRQYDDLVVREAILRETLRG 808

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E   + L E     R++  H +++  E   ++ D    +F+VL+   
Sbjct: 809 GQVYYLYNDVENIEKAKKRLEELVPEARFVVGHGQMRERELERVMTDFHHQRFNVLICTT 868

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 IIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAM 921


>gi|17989033|ref|NP_541666.1| transcription-repair coupling factor [Brucella melitensis bv. 1
           str. 16M]
 gi|17984874|gb|AAL53930.1| transcription-repair coupling factor [Brucella melitensis bv. 1
           str. 16M]
          Length = 1170

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/537 (14%), Positives = 175/537 (32%), Gaps = 80/537 (14%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPNKI 204
           +   G +P AIA        + +  ++ GV    + F +A+++E +    P + +  +  
Sbjct: 4   FSKLGLKPGAIAN-------KGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQ 56

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYY-DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
             A L        P   V +  ++    Y   +             S    + +  H A 
Sbjct: 57  RIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCALKKAPHPA- 115

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                    I+ ++ + +  +    +  + ++  + G+ ++  +L + L +  ++R    
Sbjct: 116 --------VILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTV 167

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G + V G  ++++    E+   R+  FG+ +E I  F P + +     +   +   S
Sbjct: 168 RDIGEYAVRGGILDLYAPGAEE-PLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMS 226

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
                   ++            R   +   G         QR     + +        +E
Sbjct: 227 EITLSSDMISRF----------RKNYVAMFGAP-------QRDDALYQAISEGRRFAGME 269

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           ++              T+F++      + V   H+    ++  +                
Sbjct: 270 HWLPLFYDNME-----TVFDH---AGPMPVVFDHLVHEALTERHTMVVDHYEARLRQAEG 321

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD------- 556
             +  D  P +      ++P  + +  TPG  E E  +   +   + P G  +       
Sbjct: 322 KEAGSDAVPYKP-----VKPEMLYL--TPGQVE-EAAEAAGLRIDLTPFGAPEVSGRTII 373

Query: 557 --------PPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                      E R+A      E V   I      G ++L+   T+   + L + L E  
Sbjct: 374 HADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEGSLDRLCQVLDEHG 433

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +       +++T++R+  ++ L   K    V   +L          LV + + D  G
Sbjct: 434 LE------KIETVDRLSTVKALSRDK----VTAAVLAVESGFDAGDLVVVAEQDILG 480



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 775  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPLVIRETLLRERYR 833

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       D+ E+L E    ++V   H ++      +I+     G++DVL+  
Sbjct: 834  GGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 893

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 894  TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 946

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 947  -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 987

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 988  QSGHIKEVGFELYQQMLEEA 1007


>gi|254369252|ref|ZP_04985264.1| transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. holarctica FSC022]
 gi|157122202|gb|EDO66342.1| transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. holarctica FSC022]
          Length = 1141

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/447 (16%), Positives = 154/447 (34%), Gaps = 56/447 (12%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE--YFV 226
              ++    GS  +    + ++   +  +++  +   A ++Y E K    +N+     F 
Sbjct: 9   NDTVVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNNSKVDILFF 68

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
              +    + +    D      S   E + +M H    +L      I+ S  + +  I  
Sbjct: 69  PNLEILPYDRFSASIDII----SRRQEILYKMTHQPQNTL------IITSISNTLRKIAP 118

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                +    LK GD+++  +    L +  Y   +    +G F + G  I+I+P     V
Sbjct: 119 ASFIQEHSFILKTGDNLDITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPI-GSKV 177

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
           A+R+ +F N+I+ I E    + +    +++I I  +   V        A           
Sbjct: 178 AFRIDLFDNEIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFA----------- 226

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
              L+K  +L   + L   I      ++       IE Y          +   +L++Y+P
Sbjct: 227 ---LDKLNKLCGDKALNSTIA---TYIQNNEYFSGIEFYLPLFY-----DKLSSLYDYLP 275

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
             + + + ++      I         R   L           D   L F          I
Sbjct: 276 PSTNIHLVDN--ITNSIEAFSDEVKFRYNELKHN-------SDRPILPF--------QEI 318

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPP--VEIRSARTQVEDVYDEINLAAQQGL- 583
             S        +Q + I   Q  +    +     +E  SA  ++ + + ++     +   
Sbjct: 319 FYSQQEIQDIYQQYKNIKWFQQPKSKSKILKVDHLEKISANYKLANPFKDLQQFIDKSNF 378

Query: 584 -RILLTVLTKRMAEDLTEYLYERNIRV 609
            +++ +  +   AE L E+L + N+ +
Sbjct: 379 DKVIFSTDSNGRAELLLEHLNKLNLNI 405



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 91/265 (34%), Gaps = 26/265 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +  I    P   +     ++     +  + + ++    +
Sbjct: 748 ILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDNNI--IREAVSRETIR 805

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +I          ++  E L E      I +   H ++   E  +++ D +  K  +L+
Sbjct: 806 GGQIFYLYNKVETIQKKKEILQELFPRLRIAIA--HGQMSEKEIQKVMFDFKHNKHHILL 863

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I DA+  G  +    L Q  GR  R+ +            SI
Sbjct: 864 CTTIIETGIDIPNANTLIIEDANNLGLAQ----LHQLRGRVGRSHHQAYAYMLIPNKASI 919

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
               D   R        +        +   +I    + +  E +     +ID   L+L  
Sbjct: 920 TK--DALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSG----NIDGIGLNLYM 973

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEE 782
                 + +LR     A   LN EE
Sbjct: 974 DLLDKTIANLR-----AGKELNIEE 993



 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKT-FTM--AKVIE 190
            ++   F     Y  + DQ +AI  + K  I ++   +L+ G  G GKT  TM  A +  
Sbjct: 584 EEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEITMRAAFLAT 643

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
             Q+   ++ P  ILA Q Y+ FK+ F + A+
Sbjct: 644 QNQKQVAILVPTTILAQQHYNSFKDRFTNTAI 675


>gi|62317564|ref|YP_223417.1| transcription-repair coupling factor [Brucella abortus bv. 1 str.
           9-941]
 gi|189022818|ref|YP_001932559.1| Mfd, transcription-repair coupling factor [Brucella abortus S19]
 gi|237817111|ref|ZP_04596103.1| transcription-repair coupling factor [Brucella abortus str. 2308 A]
 gi|254691061|ref|ZP_05154315.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 6
           str. 870]
 gi|254698846|ref|ZP_05160674.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254732293|ref|ZP_05190871.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 4
           str. 292]
 gi|256256246|ref|ZP_05461782.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 9
           str. C68]
 gi|260544801|ref|ZP_05820622.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260756658|ref|ZP_05869006.1| transcription-repair coupling factor [Brucella abortus bv. 6 str.
           870]
 gi|260760089|ref|ZP_05872437.1| transcription-repair coupling factor [Brucella abortus bv. 4 str.
           292]
 gi|260763327|ref|ZP_05875659.1| transcription-repair coupling factor [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882475|ref|ZP_05894089.1| transcription-repair coupling factor [Brucella abortus bv. 9 str.
           C68]
 gi|297249604|ref|ZP_06933305.1| transcription-repair coupling factor [Brucella abortus bv. 5 str.
           B3196]
 gi|62197757|gb|AAX76056.1| Mfd, transcription-repair coupling factor [Brucella abortus bv. 1
           str. 9-941]
 gi|189021392|gb|ACD74113.1| Mfd, transcription-repair coupling factor [Brucella abortus S19]
 gi|237787924|gb|EEP62140.1| transcription-repair coupling factor [Brucella abortus str. 2308 A]
 gi|260098072|gb|EEW81946.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260670407|gb|EEX57347.1| transcription-repair coupling factor [Brucella abortus bv. 4 str.
           292]
 gi|260673748|gb|EEX60569.1| transcription-repair coupling factor [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260676766|gb|EEX63587.1| transcription-repair coupling factor [Brucella abortus bv. 6 str.
           870]
 gi|260872003|gb|EEX79072.1| transcription-repair coupling factor [Brucella abortus bv. 9 str.
           C68]
 gi|297173473|gb|EFH32837.1| transcription-repair coupling factor [Brucella abortus bv. 5 str.
           B3196]
          Length = 1170

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 78/537 (14%), Positives = 175/537 (32%), Gaps = 80/537 (14%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPNKI 204
           +   G +P AIA        + +  ++ GV    + F +A+++E +    P + +  +  
Sbjct: 4   FSKLGLKPGAIAN-------KGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQ 56

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYY-DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
             A L        P   V +  ++    Y   +             S    + +  H A 
Sbjct: 57  RIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCALKKAPHPA- 115

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                    I+ +S + +  +    +  + ++  + G+ ++  +L + L +  ++R    
Sbjct: 116 --------VILTTSNAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTV 167

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G + V G  ++++    E+   R+  FG+ +E I  F P + +     +   +   S
Sbjct: 168 RDIGEYAVRGGILDLYAPGAEE-PLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMS 226

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
                   ++            R   +   G         QR     + +        +E
Sbjct: 227 EITLSSDMISRF----------RKNYVAMFGAP-------QRDDALYQAISEGRRFAGME 269

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           ++              T+F++      + V   H+    ++  +                
Sbjct: 270 HWLPLFYDNLE-----TVFDH---AGPMPVVFDHLVHEALTERHTMVVDHYEARLRQAEG 321

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD------- 556
             +  D  P +      ++P  + +  TPG  E E  +   +   + P G  +       
Sbjct: 322 KEAGSDAVPYKP-----VKPEMLYL--TPGQVE-EAAEAAGLRIDLTPFGAPEVSGRTII 373

Query: 557 --------PPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                      E R+A      E V   I      G ++L+   T+   + L + L E  
Sbjct: 374 HADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEGSLDRLCQVLDEHG 433

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +       +++T++R+  ++ L   K    V   +L          LV + + D  G
Sbjct: 434 LE------KIETVDRLSTVKALSRDK----VTAAVLAVESGFDAGDLVVVAEQDILG 480



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 775  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPLVIRETLLRERYR 833

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       D+ E+L E    ++V   H ++      +I+     G++DVL+  
Sbjct: 834  GGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 893

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 894  TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 946

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 947  -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 987

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 988  QSGHIKEVGFELYQQMLEEA 1007


>gi|89256268|ref|YP_513630.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314722|ref|YP_763445.1| transcription-repair coupling factor TRCF [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156502334|ref|YP_001428399.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254367605|ref|ZP_04983626.1| transcription-repair coupling factor, ATP-dependent [Francisella
           tularensis subsp. holarctica 257]
 gi|89144099|emb|CAJ79356.1| Transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. holarctica LVS]
 gi|115129621|gb|ABI82808.1| transcription-repair coupling factor TRCF [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253416|gb|EBA52510.1| transcription-repair coupling factor, ATP-dependent [Francisella
           tularensis subsp. holarctica 257]
 gi|156252937|gb|ABU61443.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 1141

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/447 (16%), Positives = 154/447 (34%), Gaps = 56/447 (12%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE--YFV 226
              ++    GS  +    + ++   +  +++  +   A ++Y E K    +N+     F 
Sbjct: 9   NDTVVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNNSKVDILFF 68

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
              +    + +    D      S   E + +M H    +L      I+ S  + +  I  
Sbjct: 69  PNLEILPYDRFSASIDII----SRRQEILYKMTHQPQNTL------IITSISNTLRKIAP 118

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                +    LK GD+++  +    L +  Y   +    +G F + G  I+I+P     V
Sbjct: 119 ASFIQEHSFILKTGDNLDITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPI-GSKV 177

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
           A+R+ +F N+I+ I E    + +    +++I I  +   V        A           
Sbjct: 178 AFRIDLFDNEIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFA----------- 226

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
              L+K  +L   + L   I      ++       IE Y          +   +L++Y+P
Sbjct: 227 ---LDKLNKLCGDKALNSTIA---TYIQNNEYFSGIEFYLPLFY-----DKLSSLYDYLP 275

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
             + + + ++      I         R   L           D   L F          I
Sbjct: 276 PSTNIHLVDN--ITNSIEAFSDEVKFRYNELKHN-------SDRPILPF--------QEI 318

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPP--VEIRSARTQVEDVYDEINLAAQQGL- 583
             S        +Q + I   Q  +    +     +E  SA  ++ + + ++     +   
Sbjct: 319 FYSQQEIQDIYQQYKNIKWFQQPKSKSKILKVDHLEKISANYKLANPFKDLQQFIDKSNF 378

Query: 584 -RILLTVLTKRMAEDLTEYLYERNIRV 609
            +++ +  +   AE L E+L + N+ +
Sbjct: 379 DKVIFSTDSNGRAELLLEHLNKLNLNI 405



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 92/265 (34%), Gaps = 26/265 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +  I    P   +     ++     +  + + ++    +
Sbjct: 748 ILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDNNI--IREAVSRETIR 805

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +I          ++  E L E      I +   H ++   E  +++ D +  K+ +L+
Sbjct: 806 GGQIFYLYNKVETIQKKKEILQELFPRLRIAIA--HGQMSEKEIQKVMFDFKHNKYHILL 863

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I DA+  G  +    L Q  GR  R+ +            SI
Sbjct: 864 CTTIIETGIDIPNANTLIIEDANNLGLAQ----LHQLRGRVGRSHHQAYAYMLIPNKASI 919

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
               D   R        +        +   +I    + +  E +     +ID   L+L  
Sbjct: 920 TK--DALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSG----NIDGIGLNLYM 973

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEE 782
                 + +LR     A   LN EE
Sbjct: 974 DLLDKTIANLR-----AGKELNIEE 993



 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKT-FTM--AKVIE 190
            ++   F     Y  + DQ +AI  + K  I ++   +L+ G  G GKT  TM  A +  
Sbjct: 584 EEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEITMRAAFLAT 643

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
             Q+   ++ P  ILA Q Y+ FK+ F + A+
Sbjct: 644 QNQKQVAILVPTTILAQQHYNSFKDRFTNTAI 675


>gi|50084573|ref|YP_046083.1| transcription-repair coupling protein [Acinetobacter sp. ADP1]
 gi|49530549|emb|CAG68261.1| transcription-repair coupling protein [Acinetobacter sp. ADP1]
          Length = 1171

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 120/343 (34%), Gaps = 38/343 (11%)

Query: 155 AAIAQL-LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
             I++L LK + + EK   +  + GS       ++++      +++  N    AQL SE 
Sbjct: 20  QQISELKLKQLKAGEKR-WIGSLFGSSGALLFKEIVQQHTTLLVIVTQNSQHLAQLESEL 78

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           + +     +      ++    +   P  D   E+ + ++              + +   +
Sbjct: 79  EFYGVKPTI---FPDWEILPYDRLSPHQDIVSERLAILSN-------------MPQTGVL 122

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           ++S+ +    +  +         +++G  ++ ++    L++  Y   D     G F V G
Sbjct: 123 LISASTLAQRVAPIGWVLGEHFDIQVGQKLDLEKEKLRLIQAGYHLVDTVYDHGEFAVRG 182

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++I+ +  ++   R+ +F ++I+ +  F P T +   N++  +I     +        
Sbjct: 183 SIMDIY-ASGQEQPIRIDLFDDEIDTLKFFDPETQRTTENLKQFRILPAKEFPLKEGRSI 241

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                     + R  E        +            + +    +   +E Y      + 
Sbjct: 242 ---------FRERYAEAFPTANPKK--------NPIYQDVLDGIASPGVEFYLPLFFEKG 284

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
             E       Y+P + ++  +++      ++  ++    R  +
Sbjct: 285 QMESQSYFTAYLPRNCIVITNDALD--ESLTSCWKDVVQRYES 325



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 71/193 (36%), Gaps = 11/193 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-VYDEINLAAQQGL 583
            + ++ATP    L      + +  I  T            +   +D V + I     +G 
Sbjct: 772 MLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEHTDDSVREAILRELLRGG 831

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   E +       R    H +++  E  ++++     +++VLV   +
Sbjct: 832 QVYFLHNEVDSIERTAENIRNLVPEARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTI 891

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + +  ADK G  +    L Q  GR  R+ +     YA  +  SI+   
Sbjct: 892 IETGIDVPNANTIIMERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVPSIKHLK 944

Query: 702 DETTRRR-EKQLE 713
            +  +R    Q  
Sbjct: 945 GDAEKRLDAIQRA 957


>gi|290953610|ref|ZP_06558231.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313111|ref|ZP_06803801.1| transcription-repair coupling factor [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 1141

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/447 (16%), Positives = 154/447 (34%), Gaps = 56/447 (12%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE--YFV 226
              ++    GS  +    + ++   +  +++  +   A ++Y E K    +N+     F 
Sbjct: 9   NDTVVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNNSKVDILFF 68

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
              +    + +    D      S   E + +M H    +L      I+ S  + +  I  
Sbjct: 69  PNLEILPYDRFSASIDII----SRRQEILYKMTHQPQNTL------IITSISNTLRKIAP 118

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                +    LK GD+++  +    L +  Y   +    +G F + G  I+I+P     V
Sbjct: 119 ASFIQEHSFILKTGDNLDITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPI-GSKV 177

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
           A+R+ +F N+I+ I E    + +    +++I I  +   V        A           
Sbjct: 178 AFRIDLFDNEIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFA----------- 226

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
              L+K  +L   + L   I      ++       IE Y          +   +L++Y+P
Sbjct: 227 ---LDKLNKLCGDKALNSTIA---TYIQNNEYFSGIEFYLPLFY-----DKLSSLYDYLP 275

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
             + + + ++      I         R   L           D   L F          I
Sbjct: 276 PSTNIHLVDN--ITNSIEAFSDEVKFRYNELKHN-------SDRPILPF--------QEI 318

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPP--VEIRSARTQVEDVYDEINLAAQQGL- 583
             S        +Q + I   Q  +    +     +E  SA  ++ + + ++     +   
Sbjct: 319 FYSQQEIQDIYQQYKNIKWFQQPKSKSKILKVDHLEKISANYKLANPFKDLQQFIDKSNF 378

Query: 584 -RILLTVLTKRMAEDLTEYLYERNIRV 609
            +++ +  +   AE L E+L + N+ +
Sbjct: 379 DKVIFSTDSNGRAELLLEHLNKLNLNI 405



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 92/265 (34%), Gaps = 26/265 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +  I    P   +     ++     +  + + ++    +
Sbjct: 748 ILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDNNI--IREAVSRETIR 805

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +I          ++  E L E      I +   H ++   E  +++ D +  K+ +L+
Sbjct: 806 GGQIFYLYNKVETIQKKKEILQELFPRLRIAIA--HGQMSEKEIQKVMFDFKHNKYHILL 863

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I DA+  G  +    L Q  GR  R+ +            SI
Sbjct: 864 CTTIIETGIDIPNANTLIIEDANNLGLAQ----LHQLRGRVGRSHHQAYAYMLIPNKASI 919

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
               D   R        +        +   +I    + +  E +     +ID   L+L  
Sbjct: 920 TK--DALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSG----NIDGIGLNLYM 973

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEE 782
                 + +LR     A   LN EE
Sbjct: 974 DLLDKTIANLR-----AGKELNIEE 993



 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKT-FTM--AKVIE 190
            ++   F     Y  + DQ +AI  + K  I ++   +L+ G  G GKT  TM  A +  
Sbjct: 584 EEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEITMRAAFLAT 643

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
             Q+   ++ P  ILA Q Y+ FK+ F + A+
Sbjct: 644 QNQKQVAILVPTTILAQQHYNSFKDRFTNTAI 675


>gi|149371008|ref|ZP_01890603.1| transcription-repair coupling factor [unidentified eubacterium
           SCB49]
 gi|149355794|gb|EDM44352.1| transcription-repair coupling factor [unidentified eubacterium
           SCB49]
          Length = 1115

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 99/239 (41%), Gaps = 19/239 (7%)

Query: 163 GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            I SR+    L G+ GS  +  +A + +  + P +++  +K  AA   ++ +N    + V
Sbjct: 24  AIESRDNY-TLSGLVGSAVSLVIADIFKTSETPVLLILNDKEEAAYHLNDLENLLGEDNV 82

Query: 223 EYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC--IVVSSVS 279
            ++  SY   YQ           IE+  + N     +R      +  R     IV    +
Sbjct: 83  LFYPGSYRRPYQ-----------IEETDNANIL---LRSEVLNRINSRRKPSLIVTYPEA 128

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
               + + +   +  +++ +G++V    +   L + ++KR D     G F V G  ++++
Sbjct: 129 LFEKVVTKKELDKNTLKISVGENVTIDFVNEVLFEYKFKRTDFVTEPGEFSVRGGILDVY 188

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
            S   D  +R+  FG+D++ I  F   T   +  ++ I I  N           + +KY
Sbjct: 189 -SFSNDEPYRIEFFGDDVDSIRTFDVETQLSLEQLKKISIIPNVENKHLDENRESFLKY 246



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 64/176 (36%), Gaps = 7/176 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +  +I        PVE +  R + E + D +     +G 
Sbjct: 705 TLTLTATPIPRTLQFSLMAARDLSVITTPPPNRHPVETQVVRFEQELIRDAVRYEISRGG 764

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +           +++   +       +    H ++   +   ++      +FDVLV   +
Sbjct: 765 QTFFVHNRIDNIKEVAGMIQRLVPDAKIGIGHGQMDGKKLEALMLSFMNNEFDVLVATTI 824

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  GLD+     + I +A+  G     + L Q  GR  R+       +      ++
Sbjct: 825 IESGLDVSNANTIFINNANNFGL----SDLHQMRGRVGRSNKKAFCYFITPPYSAM 876



 Score = 42.0 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A   G ++ + V T     +     +E L    + V Y++      ER
Sbjct: 587 GKTEVAVRAAFKAVDNGKQVAILVPTTILAYQHFNTFSERLSGMPVTVDYLNRFRTAKER 646

Query: 622 IEIIRDLRLGKFDVLVGI-NLLREGLDIPECGLVAILDADKEG 663
             ++  L+ GK D+++G   L+ + ++  + GL+ I +  K G
Sbjct: 647 RTVLEGLKDGKIDIVIGTHQLVSKSVEFKDLGLLIIDEEQKFG 689


>gi|291458171|ref|ZP_06597561.1| transcription-repair coupling factor [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419254|gb|EFE92973.1| transcription-repair coupling factor [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 1125

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 101/267 (37%), Gaps = 22/267 (8%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            +L   +        L G   S K    A +  +     +++  ++  A     E ++  
Sbjct: 12  KELKGLLSEGGGPLFLSGAVDSVKAMLSAALSASGW--GMLVLSSEQRAKSFLRELRSLT 69

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
                              Y P  D    +  +    I R R  A   L E    I+V++
Sbjct: 70  EQ---------------SFYYPAKDLLFYQADTQGTLITRQRVEALSHLTEDESGILVTT 114

Query: 278 VSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           +  +   I   ES+   +++L  G   E   L   L    Y+R       G + + G  +
Sbjct: 115 IDALMDKIWDRESFQGAVLRLAPGQIHELSALSKKLTSLGYQRLPAVEAMGEYSLRGGIL 174

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +I+P   E+   R+  +G++I+ I  F  L+ + +  ++  +I   +     R    + +
Sbjct: 175 DIYPFTAEN-PIRLEFWGDEIDNIRSFDLLSQRSVEKLDEAEICPAAERGCGRKGDASLL 233

Query: 397 KYIKEELKMRLIE---LEKEGRLLEAQ 420
            Y+ E  ++ L E   L + GR++EA+
Sbjct: 234 DYLPEHARIFLDEPARLRERGRMVEAE 260



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 73/188 (38%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    ++    +   PV+        E + + +     +  
Sbjct: 726 VLTLTATPIPRTLHMSLAGIRDLSVLEEPPIDRSPVQTYVMEYNEELIREAVRRELARSG 785

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E++T  +       R  + H ++   +  EI+     G+ DVLV   +
Sbjct: 786 QVYYVHNRVNNIEEVTRRVQALVPEARVAFAHGKMNEGQLEEIMLRFINGEIDVLVSTTI 845

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + I DAD+ G  +    L Q  GR  R+  +    +     K +    
Sbjct: 846 IETGLDIPNANTLIINDADRMGLSQ----LYQIRGRVGRSSRTAYAFFLYRRGKLLS--- 898

Query: 702 DETTRRRE 709
           +E+ +R +
Sbjct: 899 EESEKRLK 906


>gi|161524500|ref|YP_001579512.1| transcription-repair coupling factor [Burkholderia multivorans ATCC
           17616]
 gi|221215034|ref|ZP_03588001.1| transcription-repair coupling factor [Burkholderia multivorans
           CGD1]
 gi|160341929|gb|ABX15015.1| transcription-repair coupling factor [Burkholderia multivorans ATCC
           17616]
 gi|221164970|gb|EED97449.1| transcription-repair coupling factor [Burkholderia multivorans
           CGD1]
          Length = 1156

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/453 (15%), Positives = 147/453 (32%), Gaps = 61/453 (13%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFF 217
           +  +   ++     G  GS     +A+ +   +       V+  N + A +L  E   F 
Sbjct: 13  VARVKPGQRFAFD-GTHGSADALAIARYLADNREHVPLLAVICANAVDAQRLSQEIGYFA 71

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVS 276
           P   V               +P  +T      S ++ +   R +    L E     ++V 
Sbjct: 72  PDARVRL-------------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVP 118

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + + +Y +      +        G+ +++ +L S L    Y+     +  G + V G  I
Sbjct: 119 ATTALYRMPPASFMAAYTFAFAQGERLDEAKLKSQLTLAGYEHVSQVVRPGEYCVRGSLI 178

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++FP     + +R+ +F + ++ I  F P T + +  V  +++     +           
Sbjct: 179 DLFPM-GSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA----- 232

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
              +   + R  E  +                  + +        IE Y          +
Sbjct: 233 ---RTAFRSRWRETFEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----D 275

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TLF Y+P+D+ L        +      +  D  ++     +    P           
Sbjct: 276 ETATLFHYLPQDAHLVFAGD---LDASIRRFTADTKQRYAFLSHDRERP----------- 321

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
               L P  + +S     + L +    +V       G      E+ +     +D    + 
Sbjct: 322 ---ILEPQRLFLS-DDDFFTLAKPFARLVLPAQPAGGWATALPEL-TVDRHADDPLAALR 376

Query: 577 LAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIR 608
              +  G R+LLTV +    E + + L E ++R
Sbjct: 377 TFVETSGKRVLLTVESAGRRETILQLLAEHHLR 409



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 755 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 812

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L E     R +  H ++   E   ++RD    + +VL+  
Sbjct: 813 GGQVYFLHNEVETIENRKAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +++  
Sbjct: 873 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQALTK 928

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 929 ---QAQRRLEAIQQME 941


>gi|256043474|ref|ZP_05446403.1| transcription-repair coupling factor [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260564670|ref|ZP_05835155.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265989892|ref|ZP_06102449.1| transcription-repair coupling factor [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260152313|gb|EEW87406.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|263000561|gb|EEZ13251.1| transcription-repair coupling factor [Brucella melitensis bv. 1
           str. Rev.1]
          Length = 1170

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/537 (14%), Positives = 175/537 (32%), Gaps = 80/537 (14%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPNKI 204
           +   G +P AIA        + +  ++ GV    + F +A+++E +    P + +  +  
Sbjct: 4   FSKLGLKPGAIAN-------KGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQ 56

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYY-DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
             A L        P   V +  ++    Y   +             S    + +  H A 
Sbjct: 57  RIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCALKKAPHPA- 115

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                    I+ ++ + +  +    +  + ++  + G+ ++  +L + L +  ++R    
Sbjct: 116 --------VILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTV 167

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G + V G  ++++    E+   R+  FG+ +E I  F P + +     +   +   S
Sbjct: 168 RDIGEYAVRGGILDLYAPGAEE-PLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMS 226

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
                   ++            R   +   G         QR     + +        +E
Sbjct: 227 EITLSSDMISRF----------RKNYVAMFGAP-------QRDDALYQAISEGRRFAGME 269

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           ++              T+F++      + V   H+    ++  +                
Sbjct: 270 HWLPLFYDNME-----TVFDH---AGPMPVVFDHLVHEALTERHTMVVDHYEARLRQAEG 321

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD------- 556
             +  D  P +      ++P  + +  TPG  E E  +   +   + P G  +       
Sbjct: 322 KEAGSDAVPYKP-----VKPEMLYL--TPGQVE-EAAEAAGLRIDLTPFGAPEVSGRTII 373

Query: 557 --------PPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                      E R+A      E V   I      G ++L+   T+   + L + L E  
Sbjct: 374 HADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEGSLDRLCQVLDEHG 433

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +       +++T++R+  ++ L   K    V   +L          LV + + D  G
Sbjct: 434 LE------KIETVDRLSTVKALSRDK----VTAAVLAVESGFDAGDLVVVAEQDILG 480



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 775  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPLVIRETLLRERYR 833

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       D+ E+L E    ++V   H ++      +I+     G++DVL+  
Sbjct: 834  GGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 893

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 894  TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 946

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 947  -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 987

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 988  QSGHIKEVGFELYQQMLEEA 1007


>gi|161620641|ref|YP_001594527.1| transcription-repair coupling factor [Brucella canis ATCC 23365]
 gi|260568134|ref|ZP_05838603.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|161337452|gb|ABX63756.1| transcription-repair coupling factor [Brucella canis ATCC 23365]
 gi|260154799|gb|EEW89880.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
          Length = 1170

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/537 (14%), Positives = 175/537 (32%), Gaps = 80/537 (14%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPNKI 204
           +   G +P AIA        + +  ++ GV    + F +A+++E +    P + +  +  
Sbjct: 4   FSKLGLKPGAIAN-------KGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQ 56

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYY-DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
             A L        P   V +  ++    Y   +             S    + +  H A 
Sbjct: 57  RIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCALKKAPHPA- 115

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                    I+ ++ + +  +    +  + ++  + G+ ++  +L + L +  ++R    
Sbjct: 116 --------VILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTV 167

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G + V G  ++++    E+   R+  FG+ +E I  F P + +     +   +   S
Sbjct: 168 RDIGEYAVRGGILDLYAPGAEE-PLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMS 226

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
                   ++            R   +   G         QR     + +        +E
Sbjct: 227 EITLSSDMISRF----------RKNYVAMFGAP-------QRDDALYQAISEGRRFAGME 269

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           ++              T+F++      + V   H+    ++  +                
Sbjct: 270 HWLPLFYDNLE-----TVFDH---AGPMPVVFDHLVHEALTERHTMVVDHYEARLRQAEG 321

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD------- 556
             +  D  P +      ++P  + +  TPG  E E  +   +   + P G  +       
Sbjct: 322 KEAGSDAVPYKP-----VKPEMLYL--TPGQVE-EAAEAAGLRIDLTPFGAPEVSGRTII 373

Query: 557 --------PPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                      E R+A      E V   I      G ++L+   T+   + L + L E  
Sbjct: 374 HADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEGSLDRLCQALDEHG 433

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +       +++T++R+  ++ L   K    V   +L          LV + + D  G
Sbjct: 434 LE------KIETVDRLSTVKALSRDK----VTAAVLAVESGFDAGDLVVVAEQDILG 480



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 94/260 (36%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  +     + +     +
Sbjct: 775  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPFVIRETLLRERYR 833

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       D+ E+L E    ++V   H ++      +I+     G++DVL+  
Sbjct: 834  GGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 893

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 894  TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 946

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 947  -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 987

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 988  QSGHIKEVGFELYQQMLEEA 1007


>gi|254702954|ref|ZP_05164782.1| transcription-repair coupling factor [Brucella suis bv. 3 str. 686]
 gi|261753561|ref|ZP_05997270.1| transcription-repair coupling factor [Brucella suis bv. 3 str. 686]
 gi|261743314|gb|EEY31240.1| transcription-repair coupling factor [Brucella suis bv. 3 str. 686]
          Length = 1170

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/537 (14%), Positives = 175/537 (32%), Gaps = 80/537 (14%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPNKI 204
           +   G +P AIA        + +  ++ GV    + F +A+++E +    P + +  +  
Sbjct: 4   FSKLGLKPGAIAN-------KGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQ 56

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYY-DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
             A L        P   V +  ++    Y   +             S    + +  H A 
Sbjct: 57  RIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCALKKAPHPA- 115

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                    I+ ++ + +  +    +  + ++  + G+ ++  +L + L +  ++R    
Sbjct: 116 --------VILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTV 167

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G + V G  ++++    E+   R+  FG+ +E I  F P + +     +   +   S
Sbjct: 168 RDIGEYAVRGGILDLYAPGAEE-PLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMS 226

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
                   ++            R   +   G         QR     + +        +E
Sbjct: 227 EITLSSDMISRF----------RKNYVAMFGAP-------QRDDALYQAISEGRRFAGME 269

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           ++              T+F++      + V   H+    ++  +                
Sbjct: 270 HWLPLFYDNLE-----TVFDH---AGPMPVVFDHLVHEALTERHTMVVDHYEARLRQAEG 321

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD------- 556
             +  D  P +      ++P  + +  TPG  E E  +   +   + P G  +       
Sbjct: 322 KEAGSDAVPYKP-----VKPEMLYL--TPGQVE-EAAEAAGLRIDLTPFGAPEVSGRTII 373

Query: 557 --------PPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                      E R+A      E V   I      G ++L+   T+   + L + L E  
Sbjct: 374 HADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEGSLDRLCQALDEHG 433

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +       +++T++R+  ++ L   K    V   +L          LV + + D  G
Sbjct: 434 LE------KIETVDRLSTVKALSRDK----VTAAVLAVESGFDAGDLVVVAEQDILG 480



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 94/260 (36%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  +     + +     +
Sbjct: 775  HVLTLSATPIPRTLQLALTGVRELSLIATPPVDRMA-VRTFVSPFDPFVIRETLLRERYR 833

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       D+ E+L E    ++V   H ++      +I+     G++DVL+  
Sbjct: 834  GGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 893

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 894  TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 946

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 947  -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 987

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 988  QSGHIKEVGFELYQQMLEEA 1007


>gi|256111504|ref|ZP_05452518.1| transcription-repair coupling factor [Brucella melitensis bv. 3
           str. Ether]
 gi|265993002|ref|ZP_06105559.1| transcription-repair coupling factor [Brucella melitensis bv. 3
           str. Ether]
 gi|262763872|gb|EEZ09904.1| transcription-repair coupling factor [Brucella melitensis bv. 3
           str. Ether]
          Length = 1170

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/537 (14%), Positives = 175/537 (32%), Gaps = 80/537 (14%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPNKI 204
           +   G +P AIA        + +  ++ GV    + F +A+++E +    P + +  +  
Sbjct: 4   FSKLGLKPGAIAN-------KGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQ 56

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYY-DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
             A L        P   V +  ++    Y   +             S    + +  H A 
Sbjct: 57  RIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCALKKAPHPA- 115

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                    I+ ++ + +  +    +  + ++  + G+ ++  +L + L +  ++R    
Sbjct: 116 --------VILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTV 167

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G + V G  ++++    E+   R+  FG+ +E I  F P + +     +   +   S
Sbjct: 168 RDIGEYAVRGGILDLYAPGAEE-PLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMS 226

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
                   ++            R   +   G         QR     + +        +E
Sbjct: 227 EITLSSDMISRF----------RKNYVAMFGAP-------QRDDALYQAISEGRRFAGME 269

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           ++              T+F++      + V   H+    ++  +                
Sbjct: 270 HWLPLFYDNME-----TVFDH---AGPMPVVFDHLVHEALTERHTMVVDHYEARLRQAEG 321

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD------- 556
             +  D  P +      ++P  + +  TPG  E E  +   +   + P G  +       
Sbjct: 322 KEAGSDAVPYKP-----VKPEMLYL--TPGQVE-EAAEAAGLRIDLTPFGAPEVSGRTII 373

Query: 557 --------PPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                      E R+A      E V   I      G ++L+   T+   + L + L E  
Sbjct: 374 HADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEGSLDRLCQVLDEHG 433

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +       +++T++R+  ++ L   K    V   +L          LV + + D  G
Sbjct: 434 LE------KIETVDRLSTVKALSRDK----VTAAVLAVESGFDAGDLVVVAEQDILG 480



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 775  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPLVIRETLLRERYR 833

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       D+ E+L E    ++V   H ++      +I+     G++DVL+  
Sbjct: 834  GGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 893

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 894  TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 946

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 947  -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 987

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 988  QSGHIKEVGFELYQQMLEEA 1007


>gi|212716156|ref|ZP_03324284.1| hypothetical protein BIFCAT_01072 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661523|gb|EEB22098.1| hypothetical protein BIFCAT_01072 [Bifidobacterium catenulatum DSM
           16992]
          Length = 1182

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 87/248 (35%), Gaps = 31/248 (12%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            +  GI    +  L  G +G+              RP + +  +   A +     ++++ 
Sbjct: 45  SITVGIPEGLRPALAAGASGT--------------RPVVFVVASGREAEETVETIRSWYS 90

Query: 219 HNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
            +  +      ++    E   PR DT   + +       R++H    S L     I+V  
Sbjct: 91  GDPNDVAQLEAWETLPHERLSPRADTVASRMAVF----RRLKHPQEGSKLFGPIRILVMP 146

Query: 278 VSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           V  +      G+  VE           G+ +   E    LV+  Y R D+ + RG F V 
Sbjct: 147 VRSLIQPVVAGLADVEPLV-----FSQGEELALDEASRRLVENAYTRVDLVMDRGEFAVR 201

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK-IRNVETIKIYANSHYVTPRPT 391
           G  I++FP  L     R+  FG++I+ I EF+    +    NV  +              
Sbjct: 202 GGIIDVFPPTL-PHPVRIEFFGDEIDTIREFHASDQRTYGGNVPVVWATPCRELQLTDKV 260

Query: 392 LNTAMKYI 399
              A   I
Sbjct: 261 RKRAKSLI 268



 Score = 40.8 bits (94), Expect = 0.87,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 61/177 (34%), Gaps = 9/177 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 783 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAVRRELLRG 841

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +    +   ++E          H ++   +   +IRD      DVLV   
Sbjct: 842 GQVFYVHNRVQDIASVAAKIHELVPESHVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTT 901

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    TK +
Sbjct: 902 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPTKPM 954


>gi|225686365|ref|YP_002734337.1| transcription-repair coupling factor [Brucella melitensis ATCC
           23457]
 gi|256262494|ref|ZP_05465026.1| transcription-repair coupling factor Mfd [Brucella melitensis bv. 2
           str. 63/9]
 gi|225642470|gb|ACO02383.1| transcription-repair coupling factor [Brucella melitensis ATCC
           23457]
 gi|263092231|gb|EEZ16528.1| transcription-repair coupling factor Mfd [Brucella melitensis bv. 2
           str. 63/9]
 gi|326410736|gb|ADZ67800.1| transcription-repair coupling factor [Brucella melitensis M28]
 gi|326554029|gb|ADZ88668.1| transcription-repair coupling factor [Brucella melitensis M5-90]
          Length = 1170

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/537 (14%), Positives = 175/537 (32%), Gaps = 80/537 (14%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPNKI 204
           +   G +P AIA        + +  ++ GV    + F +A+++E +    P + +  +  
Sbjct: 4   FSKLGLKPGAIAN-------KGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQ 56

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYY-DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
             A L        P   V +  ++    Y   +             S    + +  H A 
Sbjct: 57  RIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCALKKAPHPA- 115

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                    I+ ++ + +  +    +  + ++  + G+ ++  +L + L +  ++R    
Sbjct: 116 --------VILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTV 167

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G + V G  ++++    E+   R+  FG+ +E I  F P + +     +   +   S
Sbjct: 168 RDIGEYAVRGGILDLYAPGAEE-PLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMS 226

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
                   ++            R   +   G         QR     + +        +E
Sbjct: 227 EITLSSDMISRF----------RKNYVAMFGAP-------QRDDALYQAISEGRRFAGME 269

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           ++              T+F++      + V   H+    ++  +                
Sbjct: 270 HWLPLFYDNME-----TVFDH---AGPMPVVFDHLVHEALTERHTMVVDHYEARLRQAEG 321

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD------- 556
             +  D  P +      ++P  + +  TPG  E E  +   +   + P G  +       
Sbjct: 322 KEAGSDAVPYKP-----VKPEMLYL--TPGQVE-EAAEAAGLRIDLTPFGAPEVSGRTII 373

Query: 557 --------PPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                      E R+A      E V   I      G ++L+   T+   + L + L E  
Sbjct: 374 HADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEGSLDRLCQVLDEHG 433

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +       +++T++R+  ++ L   K    V   +L          LV + + D  G
Sbjct: 434 LE------KIETVDRLSTVKALSRDK----VTAAVLAVESGFDAGDLVVVAEQDILG 480



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 775  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPLVIRETLLRERYR 833

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       D+ E+L E    ++V   H ++      +I+     G++DVL+  
Sbjct: 834  GGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 893

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 894  TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 946

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 947  -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 987

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 988  QSGHIKEVGFELYQQMLEEA 1007


>gi|154487169|ref|ZP_02028576.1| hypothetical protein BIFADO_01009 [Bifidobacterium adolescentis
           L2-32]
 gi|154085032|gb|EDN84077.1| hypothetical protein BIFADO_01009 [Bifidobacterium adolescentis
           L2-32]
          Length = 1188

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 93/250 (37%), Gaps = 19/250 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           IA  ++   S     + +GV    +    A       +P +++  +   A +     +++
Sbjct: 37  IAGEIEEPESDIDPSITVGVPDGLRPALAAGAAGK--QPVVLVVASSREAEEAVESIRSW 94

Query: 217 FPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
           +  +  +      ++    E   PR DT   + +       R++H    S L     I+V
Sbjct: 95  YDGDPNDVAQLEAWETLPHERLSPRADTVASRMAVF----RRLKHPEEGSTLFGPIRILV 150

Query: 276 SSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             V  +      G+G VE           G+ +   E    LV+  Y R D+ + RG F 
Sbjct: 151 MPVRSLIQPVVAGLGDVEPLV-----FSQGEELPLDEASRKLVENAYTRVDLVMDRGEFA 205

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK-IRNVETIKIYANSHYVTPR 389
           V G  I++FP  L     R+  FG++I+ I EF+    +   +++ T+            
Sbjct: 206 VRGGIIDVFPPTL-PHPVRIEFFGDEIDTIREFHASDQRTYGKDISTVWATPCRELQLTD 264

Query: 390 PTLNTAMKYI 399
                A   I
Sbjct: 265 QIRQRAKSLI 274



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 61/177 (34%), Gaps = 9/177 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 789 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAIRRELLRG 847

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +    +   ++E          H ++   +   +IRD      DVLV   
Sbjct: 848 GQVFYVHNRVQDISSVAAKIHELVPESHVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTT 907

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    TK +
Sbjct: 908 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPTKPM 960


>gi|325676609|ref|ZP_08156287.1| transcription-repair coupling factor [Rhodococcus equi ATCC 33707]
 gi|325552787|gb|EGD22471.1| transcription-repair coupling factor [Rhodococcus equi ATCC 33707]
          Length = 1225

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 16/221 (7%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           + + F  A + +  Q   +++      A  L +E +  F    V  F S+ +    E   
Sbjct: 49  AARPFVAAALADRTQ--LLLVTATGREADDLTTELQEIFGD-GVAQFPSW-ETLPHERLS 104

Query: 239 PRTDTYIEKESSINEQIDRMRHSA--TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           P  DT   +       +  +R  A    +       ++V++V  +    +        V 
Sbjct: 105 PSADTVGRR-------LQVLRRLACPDEADYGPPLRVIVTTVRSLVQPMAPGLGDIEPVV 157

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L+IG   +  EL+S L +  Y R D+   RG F V G  +++FP    D   RV  +G++
Sbjct: 158 LRIGSEHDFGELVSRLAELAYTRVDMVGKRGEFAVRGGILDVFPP-TSDHPVRVEFWGDE 216

Query: 357 IEEISEFYPLTGQKIRNVE--TIKIYANSHYVTPRPTLNTA 395
           + E+  F     + +  +E  T+        +      + A
Sbjct: 217 VTELRAFSVADQRSLPELELSTVVAPPCRELLLTEAVRDRA 257



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 68/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + ++ PP E     T V     + V   I    
Sbjct: 805 VLTMSATPIPRTLEMSMAGIREM----STILTPPEERHPILTYVGAYADKQVAAAIRREL 860

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +   + + E     R +  H ++      + ++     +FDVLV
Sbjct: 861 LRDGQVFYVHNRVSSIDKAAKRIREMVPEARVVVAHGQMNEETLEKTVQGFWEREFDVLV 920

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +     K  
Sbjct: 921 CTTIIETGLDISNANTLIVERADSLGLSQ----LHQLRGRVGRSRERGYAYFLYPPEKP- 975

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N    
Sbjct: 976 ---LTETAYDRLATISQNSDLG 994



 Score = 41.6 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 5/109 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A Q G ++ + V T    ++  +  +E +    ++VR +       E 
Sbjct: 687 GKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFSERMANFPVKVRGLSRFTDAAES 746

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKT 669
            EII  L  G+ D++VG + LL+ G+   + GLV + +  + G    + 
Sbjct: 747 KEIIAQLADGEIDIVVGTHRLLQTGVRWKDLGLVIVDEEQRFGVEHKEH 795


>gi|312138702|ref|YP_004006038.1| transcription repair coupling factor mfd [Rhodococcus equi 103S]
 gi|311888041|emb|CBH47353.1| transcription repair coupling factor Mfd [Rhodococcus equi 103S]
          Length = 1228

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 16/221 (7%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
           + + F  A + +  Q   +++      A  L +E +  F    V  F S+ +    E   
Sbjct: 52  AARPFVAAALADRTQ--LLLVTATGREADDLTTELQEIFGD-GVAQFPSW-ETLPHERLS 107

Query: 239 PRTDTYIEKESSINEQIDRMRHSA--TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           P  DT   +       +  +R  A    +       ++V++V  +    +        V 
Sbjct: 108 PSADTVGRR-------LQVLRRLACPDEADYGPPLRVIVTTVRSLVQPMAPGLGDIEPVV 160

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           L+IG   +  EL+S L +  Y R D+   RG F V G  +++FP    D   RV  +G++
Sbjct: 161 LRIGSEHDFGELVSRLAELAYTRVDMVGKRGEFAVRGGILDVFPP-TSDHPVRVEFWGDE 219

Query: 357 IEEISEFYPLTGQKIRNVE--TIKIYANSHYVTPRPTLNTA 395
           + E+  F     + +  +E  T+        +      + A
Sbjct: 220 VTELRAFSVADQRSLPELELSTVVAPPCRELLLTEAVRDRA 260



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 68/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + ++ PP E     T V     + V   I    
Sbjct: 808 VLTMSATPIPRTLEMSMAGIREM----STILTPPEERHPILTYVGAYADKQVAAAIRREL 863

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +   + + E     R +  H ++      + ++     +FDVLV
Sbjct: 864 LRDGQVFYVHNRVSSIDKAAKRIREMVPEARVVVAHGQMNEETLEKTVQGFWEREFDVLV 923

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R+       +     K  
Sbjct: 924 CTTIIETGLDISNANTLIVERADSLGLSQ----LHQLRGRVGRSRERGYAYFLYPPEKP- 978

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  N    
Sbjct: 979 ---LTETAYDRLATISQNSDLG 997



 Score = 41.6 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 5/109 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A Q G ++ + V T    ++  +  +E +    ++VR +       E 
Sbjct: 690 GKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFSERMANFPVKVRGLSRFTDAAES 749

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKT 669
            EII  L  G+ D++VG + LL+ G+   + GLV + +  + G    + 
Sbjct: 750 KEIIAQLADGEVDIVVGTHRLLQTGVRWKDLGLVIVDEEQRFGVEHKEH 798


>gi|99081190|ref|YP_613344.1| transcription-repair coupling factor [Ruegeria sp. TM1040]
 gi|99037470|gb|ABF64082.1| transcription-repair coupling factor [Ruegeria sp. TM1040]
          Length = 1149

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 100/290 (34%), Gaps = 40/290 (13%)

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           +     P + +A +      + +  + F P   V  F             P  D      
Sbjct: 24  MARSAGPVLHIARDDKRLEAMRAALRFFAPEIPVVIF-------------PGWDCLPYDR 70

Query: 249 SSINEQIDRMRHSATRSL---LERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
            S N  I   R +   +L   L     ++ +  + +  + + E   +     ++   +++
Sbjct: 71  VSPNADISAARMATLAALVHGLPDQFILLTTLNAAMQRVPAREVLKEAAFSARVNSRIDE 130

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
             L   LV+  + +    +  G + + G  I+IFP   E    R+ +FG+ ++    F P
Sbjct: 131 DALRKFLVRMGFSQSPTVMEPGDYAIRGGIIDIFPP-GESGPVRLDLFGDTLDGARRFDP 189

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
            T +    +E +++   S  +     +    +  + E           G           
Sbjct: 190 ATQRTTEKLEVVELAPVSEVILDEAAITRFRQNYRIE-------FGAAGSD--------- 233

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                E +      Q +E++  +       E   TLF+Y+P D+ + +D+
Sbjct: 234 -DPLYEAVSAGRKHQGMEHWLPFFH-----ERLETLFDYMP-DASVTLDD 276



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 12/188 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  T+ +   + + +     +
Sbjct: 745 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA-IRTYVTEFDAITIREALLREHYR 803

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++  +L E+   + Y+  + ++   E  + +     GK+D+L+  
Sbjct: 804 GGQSFYVVPRISDLPEIEAFLQEQLPELSYVVANGQMAAGELDDRMNAFYDGKYDILLAT 863

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK   YA   TK  Q 
Sbjct: 864 TIVESGLDIPTANTMVVHRADMFGLAQ----LYQIRGRVGR---SKTRAYAYLTTKPRQR 916

Query: 700 AIDETTRR 707
             D   +R
Sbjct: 917 LTDSAEKR 924



 Score = 42.0 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 48/131 (36%), Gaps = 13/131 (9%)

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169
           I ++  L K   +  P      +   +    F     Y  + DQ  AI  ++  ++S + 
Sbjct: 566 IAAERALRKAPAMDPP-----PHAWEEFSARF----PYQETDDQLRAIEDVISDLNSGQP 616

Query: 170 -VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
             +L+ G  G GKT      A V         ++AP  +LA Q  + FK  F    +E  
Sbjct: 617 MDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAIVAPTTLLARQHAAAFKERFRGFPLEVR 676

Query: 226 VSYYDYYQPEA 236
                    EA
Sbjct: 677 QLSRFVTSKEA 687


>gi|330817293|ref|YP_004360998.1| Transcription-repair coupling factor [Burkholderia gladioli BSR3]
 gi|327369686|gb|AEA61042.1| Transcription-repair coupling factor [Burkholderia gladioli BSR3]
          Length = 1156

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 71/439 (16%), Positives = 137/439 (31%), Gaps = 60/439 (13%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G  GS     +A+ + A Q       V+  N + A +L  E   F P+  V         
Sbjct: 25  GAHGSADALAIARYLSAHQDEVPLVAVICANAVDAQRLSQEIGFFAPNARVRL------- 77

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESY 290
                 +P  +T      S ++ +   R +    L E     ++V + + +Y +      
Sbjct: 78  ------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPAAFL 131

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +        G+ +++    + L    Y+     +  G + V G  I++FP     + +R+
Sbjct: 132 AAYTFAFTQGERLDEARFKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPM-GSPLPYRI 190

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F + ++ I  F P T + +  V  +++     +              +   + R  E 
Sbjct: 191 DLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA--------RTAFRSRWRET 242

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +                    +        IE Y          E   TLF Y+P  + 
Sbjct: 243 FEGD---------PSRAPIYRDIGNGVPSAGIEYYLPLFF-----EDTATLFHYLPPRAH 288

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
           L       T       +  D  ++     +    P               L P  + +S 
Sbjct: 289 LVFSGDLDT---AIRRFTADTRQRYNFLSHDRERP--------------ILEPQRLFLS- 330

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-AQQGLRILLTV 589
               + L +    +V     P G       + +   Q ED    +    A    R+L TV
Sbjct: 331 DDDFYTLAKPFARVVLPAQAPGGWATALPPL-ALERQAEDPLATLRAYLASTPNRVLFTV 389

Query: 590 LTKRMAEDLTEYLYERNIR 608
            +    E + +   E  +R
Sbjct: 390 ESAGRRETIAQLFAEHGLR 408



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 75/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 754 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDSV--IREAMLRELKR 811

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L E     R    H ++   E   ++RD    + +VL+  
Sbjct: 812 GGQVYFLHNEVETIENRKAMLEELVPEARIAIAHGQMHERELERVMRDFVGQRANVLLCT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +S+  
Sbjct: 872 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQSLTK 927

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 928 ---QAQRRLEAIQQME 940


>gi|52424271|ref|YP_087408.1| Mfd protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306323|gb|AAU36823.1| Mfd protein [Mannheimia succiniciproducens MBEL55E]
          Length = 1148

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 124/333 (37%), Gaps = 40/333 (12%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
            + +   +   +TGS     + ++ E  Q   +V+A +   A +L  +         V Y
Sbjct: 13  QAGDHKIVANVLTGSD-GLAICEMAEQFQGLTVVVANDTKSAVRL-EKILQESGKLEVRY 70

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-ERNDCIVVSSVSCIYG 283
           F             P  +T      S ++ I   R SA   L   R   +++S  + +  
Sbjct: 71  F-------------PDWETLPYDSFSPHQDIISSRLSALFYLQNTRKGILILSVSTLMQR 117

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           I   +     ++ +K GD +  ++L   L    Y+  +  +  G F V G  +++FP   
Sbjct: 118 ICPPQYLQHNVLLIKKGDRLVIEKLRLQLENAGYRAVEQVMEHGEFAVRGALLDLFPM-G 176

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
             + +R+  F ++I+ I  F   T + +  +  I +     +    PT + ++++ + + 
Sbjct: 177 SPLPFRLDFFDDEIDSIRTFDADTQRTLEEIRQINLLPAHEF----PTDDKSIEFFRAQF 232

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           +    E+ ++   +  Q            +        IE +          E   TLF+
Sbjct: 233 RETFGEIRRDPEHIYQQ------------VSKGTLVSGIEYWQPLFF-----ENMATLFD 275

Query: 464 YIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           Y+P ++L    E +    Q    Y+    R  +
Sbjct: 276 YLPANTLFVDMEQYQI--QAERFYQDAVQRFES 306



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 66/179 (36%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      I +  I  T      + I++   Q +D+   + I     +G
Sbjct: 755 ILTLTATPIPRTLNMAMNGIRDLSIIST-PPARRLTIKTFVRQADDLLIREAILREILRG 813

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+  E L       R +  H ++   E   ++ D    +F+VLV   
Sbjct: 814 GQVYYLHNDVASIENCAEKLTALVPEARIIIGHGQMHERELERVMTDFYHQRFNVLVCST 873

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K +  
Sbjct: 874 IIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKLMTK 928



 Score = 38.2 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 4/146 (2%)

Query: 81  QSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITF 140
                 +    +  S+       +A  ++      LL         + ++ + + ++   
Sbjct: 537 VGGSEETAPLHKLGSDSWAKARRKAAEKIRDVAAELLDVYAQREAQKGFAFHYNREEFMQ 596

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGI-HSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPA 196
           F     +  + DQ AAI  ++  +   +   +L+ G  G GKT      A +     +  
Sbjct: 597 FSATFPFEETHDQEAAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQV 656

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAV 222
            V+ P  +LA Q Y  F++ F +  V
Sbjct: 657 AVLVPTTLLAQQHYENFRDRFANLPV 682


>gi|163844731|ref|YP_001622386.1| transcription-repair coupling factor [Brucella suis ATCC 23445]
 gi|163675454|gb|ABY39564.1| transcription-repair coupling factor [Brucella suis ATCC 23445]
          Length = 1170

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 77/537 (14%), Positives = 175/537 (32%), Gaps = 80/537 (14%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPNKI 204
           +   G +P AIA        + +  ++ GV    + F +A+++E +    P + +  +  
Sbjct: 4   FSKLGLKPGAIAN-------KGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQ 56

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYY-DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
             A L        P   V +  ++    Y   +             S    + +  H A 
Sbjct: 57  RIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCALKKAPHPA- 115

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                    I+ ++ + +  +    +  + ++  + G+ ++  +L + L +  ++R    
Sbjct: 116 --------VILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTV 167

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G + V G  ++++    E+   R+  FG+ +E I  F P + +     +   +   S
Sbjct: 168 RDIGEYAVRGGILDLYAPGAEE-PLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMS 226

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
                   ++            R   +   G         QR     + +        +E
Sbjct: 227 EITLSSDMISRF----------RKNYVAMFGAP-------QRDDALYQAISEGRRFAGME 269

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           ++              T+F++      + V   H+    ++  +                
Sbjct: 270 HWLPLFYDNLE-----TVFDH---AGPMPVVFDHLVHEALTERHTMVVDHYEARLRQAEG 321

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD------- 556
             +  D  P +      ++P  + +  TPG  E E  +   +   + P G  +       
Sbjct: 322 KEAGSDAVPYKP-----VKPEMLYL--TPGQVE-EAAEAAGLRIDLTPFGAPEVSGRTII 373

Query: 557 --------PPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                      E R+A      E V   I      G ++L+   T+   + L + L E  
Sbjct: 374 HADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEGSLDRLCQVLDEHG 433

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +       +++T++R+  ++ L   K    V   +L          LV + + D  G
Sbjct: 434 LE------KIETVDRLSTVKALSRDK----VTAAVLAVESGFDAGDLVVVAEQDILG 480



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 775  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPLVIRETLLRERYR 833

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       D+ E+L E    ++V   H ++      +I+     G++DVL+  
Sbjct: 834  GGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 893

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 894  TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 946

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 947  -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 987

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 988  QSGHIKEVGFELYQQMLEEA 1007


>gi|256059228|ref|ZP_05449434.1| transcription-repair coupling factor [Brucella neotomae 5K33]
 gi|261323178|ref|ZP_05962375.1| transcription-repair coupling factor [Brucella neotomae 5K33]
 gi|261299158|gb|EEY02655.1| transcription-repair coupling factor [Brucella neotomae 5K33]
          Length = 1170

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 77/537 (14%), Positives = 175/537 (32%), Gaps = 80/537 (14%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPNKI 204
           +   G +P AIA        + +  ++ GV    + F +A+++E +    P + +  +  
Sbjct: 4   FSKLGLKPGAIAN-------KGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQ 56

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYY-DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
             A L        P   V +  ++    Y   +             S    + +  H A 
Sbjct: 57  RIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCALKKAPHPA- 115

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                    I+ ++ + +  +    +  + ++  + G+ ++  +L + L +  ++R    
Sbjct: 116 --------VILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTV 167

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G + V G  ++++    E+   R+  FG+ +E I  F P + +     +   +   S
Sbjct: 168 RDIGEYAVRGGILDLYAPGAEE-PLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMS 226

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
                   ++            R   +   G         QR     + +        +E
Sbjct: 227 EITLSSDMISRF----------RKNYVAMFGAP-------QRDDALYQAISEGRRFAGME 269

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           ++              T+F++      + V   H+    ++  +                
Sbjct: 270 HWLPLFYDNLE-----TVFDH---AGPMPVVFDHLVHEALTERHTMVVDHYEARLRQAEG 321

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD------- 556
             +  D  P +      ++P  + +  TPG  E E  +   +   + P G  +       
Sbjct: 322 KEAGSDAVPYKP-----VKPEMLYL--TPGQVE-EAAEAAGLRIDLTPFGAPEVSGRTII 373

Query: 557 --------PPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                      E R+A      E V   I      G ++L+   T+   + L + L E  
Sbjct: 374 HADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEGSLDRLCQVLDEHG 433

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +       +++T++R+  ++ L   K    V   +L          LV + + D  G
Sbjct: 434 LE------KIETVDRLSTVKALSRDK----VTAAVLAVESGFDAGDLVVVAEQDILG 480



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 775  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPLVIRETLLRERYR 833

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       D+ E+L E    ++V   H ++      +I+     G++DVL+  
Sbjct: 834  GGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 893

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 894  TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 946

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 947  -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 987

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 988  QSGHIKEVGFELYQQMLEEA 1007


>gi|254695633|ref|ZP_05157461.1| transcription-repair coupling factor [Brucella abortus bv. 3 str.
           Tulya]
 gi|254699816|ref|ZP_05161644.1| transcription-repair coupling factor [Brucella suis bv. 5 str. 513]
 gi|261216031|ref|ZP_05930312.1| transcription-repair coupling factor [Brucella abortus bv. 3 str.
           Tulya]
 gi|261750288|ref|ZP_05993997.1| transcription-repair coupling factor [Brucella suis bv. 5 str. 513]
 gi|260917638|gb|EEX84499.1| transcription-repair coupling factor [Brucella abortus bv. 3 str.
           Tulya]
 gi|261740041|gb|EEY27967.1| transcription-repair coupling factor [Brucella suis bv. 5 str. 513]
          Length = 1170

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 77/537 (14%), Positives = 175/537 (32%), Gaps = 80/537 (14%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPNKI 204
           +   G +P AIA        + +  ++ GV    + F +A+++E +    P + +  +  
Sbjct: 4   FSKLGLKPGAIAN-------KGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQ 56

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYY-DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
             A L        P   V +  ++    Y   +             S    + +  H A 
Sbjct: 57  RIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCALKKAPHPA- 115

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                    I+ ++ + +  +    +  + ++  + G+ ++  +L + L +  ++R    
Sbjct: 116 --------VILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTV 167

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G + V G  ++++    E+   R+  FG+ +E I  F P + +     +   +   S
Sbjct: 168 RDIGEYAVRGGILDLYAPGAEE-PLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMS 226

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
                   ++            R   +   G         QR     + +        +E
Sbjct: 227 EITLSSDMISRF----------RKNYVAMFGAP-------QRDDALYQAISEGRRFAGME 269

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           ++              T+F++      + V   H+    ++  +                
Sbjct: 270 HWLPLFYDNLE-----TVFDH---AGPMPVVFDHLVHEALTERHTMVVDHYEARLRQAEG 321

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD------- 556
             +  D  P +      ++P  + +  TPG  E E  +   +   + P G  +       
Sbjct: 322 KEAGSDAVPYKP-----VKPEMLYL--TPGQVE-EAAEAAGLRIDLTPFGAPEVSGRTII 373

Query: 557 --------PPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                      E R+A      E V   I      G ++L+   T+   + L + L E  
Sbjct: 374 HADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEGSLDRLCQVLDEHG 433

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +       +++T++R+  ++ L   K    V   +L          LV + + D  G
Sbjct: 434 LE------KIETVDRLSTVKALSRDK----VTAAVLAVESGFDAGDLVVVAEQDILG 480



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 775  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPLVIRETLLRERYR 833

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       D+ E+L E    ++V   H ++      +I+     G++DVL+  
Sbjct: 834  GGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 893

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 894  TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 946

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 947  -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 987

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 988  QSGHIKEVGFELYQQMLEEA 1007


>gi|305665487|ref|YP_003861774.1| transcription-repair coupling factor [Maribacter sp. HTCC2170]
 gi|88710243|gb|EAR02475.1| transcription-repair coupling factor [Maribacter sp. HTCC2170]
          Length = 1172

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 97/248 (39%), Gaps = 14/248 (5%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q     +L   I   E    + G+ GS  +F  + + +    P +++  +K  AA   ++
Sbjct: 62  QSPQTRKLQDAIAQTENNIAIKGLIGSSLSFMFSSLFKENDLPFLLIFNDKEEAAYYLND 121

Query: 213 FKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
            +       V ++  SY   YQ           IE+  + N  +     +   S  ++  
Sbjct: 122 LELLIGEKDVLFYPGSYRRPYQ-----------IEETDNANVLLRAEVLNRINS-RKKPA 169

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            IV    +    + + +   +  +++K+ DS+    L   L + Q+KR D     G F V
Sbjct: 170 VIVTYPDALFEKVVTRKELDKNTLKIKVDDSLSLDFLNEVLFEYQFKRVDFVTEPGEFSV 229

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  +++F S   D  +R+  FG++++ I  F   T      V  I I  N        T
Sbjct: 230 RGGIVDVF-SFSHDEPYRIEFFGDEVDSIRTFDVETQLSTEKVTRITIIPNVENKLLNET 288

Query: 392 LNTAMKYI 399
             + + YI
Sbjct: 289 RESFLNYI 296



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 67/190 (35%), Gaps = 12/190 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+       +  +I        P+E    R   E + D ++   Q+G 
Sbjct: 758 VLTLTATPIPRTLQFSLMAARDLSVINTPPPNRYPIESNVIRFNEEIIRDAVSYEIQRGG 817

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          +++   L       +    H +    +   ++     G+FDVLV   +
Sbjct: 818 QIFFIHNRIENIKEVAGMLQRLVPDAKIGIGHGQKDGKKLEALMLAFMNGEFDVLVSTTI 877

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+     + I +A+  G     + L Q  GR  R+       +     + +    
Sbjct: 878 VESGLDVTNANTIFINNANNFGL----SDLHQMRGRVGRSNKKAFCYFITPPYEVM---- 929

Query: 702 DETTRRREKQ 711
                R+  Q
Sbjct: 930 -TNEARKRIQ 938



 Score = 38.2 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLER 621
            + E        A   G ++ + V T  +A       +E L E  + V Y++      E+
Sbjct: 640 GKTEVAIRAAFKAVDNGKQVAILVPTTILAYQHHRTFSERLKELPVSVDYLNRFRTAKEK 699

Query: 622 IEIIRDLRLGKFDVLVGI-NLLREGLDIPECGLVAILDADKEG 663
            E +  L  GK D+++G   L+ + +   + GL+ + +  K G
Sbjct: 700 RETLERLENGKVDIIIGTHQLVNKNVKFKDLGLLIVDEEQKFG 742


>gi|148255539|ref|YP_001240124.1| transcription repair coupling factor [Bradyrhizobium sp. BTAi1]
 gi|146407712|gb|ABQ36218.1| transcription-repair coupling factor [Bradyrhizobium sp. BTAi1]
          Length = 1171

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 119/362 (32%), Gaps = 51/362 (14%)

Query: 185 MAKVIEAMQRP----AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           +A+ I A  +P      V+  +     QL      F P   V  F             P 
Sbjct: 35  LARAIAAKPKPPAVSLAVVCRDGARMQQLARALDFFAPDLPVMQF-------------PA 81

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLL----ERNDCIVVSSVSCI-YGIGSVESYSQMIV 295
            D       S +  I   R +    L          IV+++V+ I   + S ++ +   +
Sbjct: 82  WDCQPYDRVSPHGGILAQRVTTLARLSRLAGSDKPLIVLTTVNAIVQRVPSRDTMAGQAL 141

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +  G  V    +++ L    Y R       G + V G  +++FP+ L D   R   FG+
Sbjct: 142 SVAPGHVVPMNSVVAWLEHNGYVRSSTVRESGEYAVRGGILDLFPAGL-DQPVRFDFFGD 200

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
            +E I  F   T + + ++ ++ +   S +     T+             R+  + + G 
Sbjct: 201 SLESIRTFDAETQRTLLDMRSLDLVPVSEFQLVTDTIRRF----------RMGYVAEFGA 250

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV-- 473
                   +R     E +        +E++      +       TLF+Y+P ++ + +  
Sbjct: 251 P-------ERDDALYEAVSEGRRYPGMEHWLPLFHDKME-----TLFDYLP-NTPIVIEP 297

Query: 474 ---DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
              D +     QI   Y                 P  +D   L   EW     +  +   
Sbjct: 298 QGEDAARERFKQIIDYYDARREAMEHPGGGAIYKPLTVDRLYLTSSEWAERLESVPLARM 357

Query: 531 TP 532
           TP
Sbjct: 358 TP 359



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 74/188 (39%), Gaps = 12/188 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  +  VD    +R+     + V   + +     +
Sbjct: 771 HVLTLSATPIPRTLQLALTGVRELSIIASPPVDRLA-VRTFVAPHDPVMIREALLRERYR 829

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ E+L +    ++V   H ++      +II     GKFD+L+  
Sbjct: 830 GGQAFYVVPRIDDLAEVKEFLDKTVPEMKVAVAHGQMAPTVIEDIIGAFYDGKFDILLST 889

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK+  YA     S   
Sbjct: 890 TIVESGLDIPRANTLIVHRADMFGLAQ----LYQLRGRVGR---SKLRAYALFTLPSTHK 942

Query: 700 AIDETTRR 707
              +  +R
Sbjct: 943 ISAQAEKR 950


>gi|307729622|ref|YP_003906846.1| transcription-repair coupling factor [Burkholderia sp. CCGE1003]
 gi|307584157|gb|ADN57555.1| transcription-repair coupling factor [Burkholderia sp. CCGE1003]
          Length = 1161

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 76/506 (15%), Positives = 157/506 (31%), Gaps = 76/506 (15%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAI----VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           G  GS     +A+      R  +    V+  + + A +L  E   F P   V        
Sbjct: 27  GTHGSSDALLIAR-YHHASREKVPLLAVVCESAVDAQRLSQEIGFFAPEARVRL------ 79

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVES 289
                  +P  +T      S ++ +   R +    L E     ++V + + +Y +     
Sbjct: 80  -------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASF 132

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
            +        G+ +++ +L S L    Y+     +  G + V G  ++++P     + +R
Sbjct: 133 LAAYTFSFSQGERLDEAKLKSQLTLAGYEHVSQVVRPGEYCVRGSLLDLYPM-GSPLPYR 191

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
           + +F + ++ I  F P T + +  V+ +++     +                    R   
Sbjct: 192 IDLFDDQVDSIRAFDPDTQRSLYPVKDVRLLPGREFPFDE--------------AARTAF 237

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
             +     E       I  D   +        IE Y          +   TLF Y+P+ +
Sbjct: 238 RSRWRETFEGDPSRASIYKD---IGNGVPSAGIEYYLPLFF-----DDTATLFHYLPQGA 289

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
            L        +      +  D  ++     +    P               L P  + ++
Sbjct: 290 QLAFVGD---LEAAIRRFTNDTKQRYNFLSHDRDRP--------------ILEPQRLFLT 332

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDP---PVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                + L +    +V  I    G   P       R A   V  +   +        R+L
Sbjct: 333 -DEDFFTLAKPFARLVLPINAGGGWATPLPNLAIDRHAEDPVSALRAYLETTP---NRVL 388

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
               +    E L + L + +++              +  +D   G     +G+  L  G 
Sbjct: 389 FAAESAGRRETLLQLLADNHLK----------PASSDSFQDWLTGDARFSLGVAPLANGF 438

Query: 647 DIPECGLVAILDADKEGFLRSKTSLI 672
            +P  G+  I + +  G L  +    
Sbjct: 439 AVPADGIAIITETELYGPLARRAGRR 464



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 24/150 (16%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            QV  +++E+     +          ++M E L     E  I V   H ++   E   ++
Sbjct: 815 GQVYFLHNEVETIENR----------RQMLEALV---PEARIAVA--HGQMHERELERVM 859

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RD    + +VL+   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +  
Sbjct: 860 RDFVAQRANVLLCTTIIETGIDVPSANTILIHRADKFGLAQ----LHQLRGRVGRSHHQ- 914

Query: 686 VILYADTITKSIQLAIDETTRRRE--KQLE 713
              Y+  +    Q    +  RR E  +Q+E
Sbjct: 915 --AYSYLLVHDPQGLTKQAQRRLEAIQQME 942


>gi|238783787|ref|ZP_04627806.1| Transcription-repair-coupling factor [Yersinia bercovieri ATCC
           43970]
 gi|238715338|gb|EEQ07331.1| Transcription-repair-coupling factor [Yersinia bercovieri ATCC
           43970]
          Length = 725

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 111/298 (37%), Gaps = 37/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE    P +++ P+   A +L  E + F                 P 
Sbjct: 22  LTGSACAVECAEIIERHHGPVMLITPDMQTALRLRDEIQQFSSW--------------PV 67

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
             +   +T      S ++ I   R S    L      +++  V+ +   +   E      
Sbjct: 68  NTLSDWETLPYDSFSPHQDIISARLSCLYQLPAMERGVIILPVNTLMQRVCPHEFLHGHA 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K G  + + +L + L +  Y+  D  +  G F   G  ++++P   E+  +R+  F 
Sbjct: 128 LVMKKGQHLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEE-PYRIDFFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           +DI+ +  F   T + +  VE I +     +   +     A++  + + + +        
Sbjct: 187 DDIDSLRVFDVDTQRTLTEVEQINLLPAHEFPIDK----AAIELFRSQWREQFDVRRDA- 241

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
                        +  + +        IE +          +P P+LF Y+PE++LL 
Sbjct: 242 ------------EHIYQQVSKGIWPAGIEYWQPLFFS----QPLPSLFSYLPENTLLI 283


>gi|297620477|ref|YP_003708614.1| putative transcription-repair-coupling factor [Waddlia chondrophila
           WSU 86-1044]
 gi|297375778|gb|ADI37608.1| putative transcription-repair-coupling factor [Waddlia chondrophila
           WSU 86-1044]
          Length = 1092

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 112/288 (38%), Gaps = 31/288 (10%)

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           K    A   +A  +  +++       A+L+ +F  F   + VEY              P 
Sbjct: 34  KALVAALAQKATGKHLLILTGTSQEEAKLFHDFPMFTNRSVVEY--------------PA 79

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV--SCIYGIGSVESYSQMIVQLK 298
            +T   ++   +  I   R+   ++LL   +  ++ S   +C+  +   ++++Q+ V   
Sbjct: 80  WETLPNEKVPPSPDIVGERYEVLKNLLHSPEPQIILSNLHACLQKLIPPDTFNQLYVNAA 139

Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358
            G  +  +  +  L    Y R  +   +G F V G  I++F         R+  +G+++E
Sbjct: 140 TGQRLPFEPFIKHLENMGYLRCPVAADKGEFAVRGGIIDLF-CVSSPEPIRIEFWGDEVE 198

Query: 359 EISEFYPLTGQKIRNVETIKIYANSHYVTPR--PTLNTAMKY-------IKEE---LKMR 406
            I  F P+  + I+ +E   I              L+T + Y       I ++   L+ R
Sbjct: 199 SIRLFDPIGQKSIQKIEKASITPAREIELIEHAENLSTILDYLGENTLVILDDLLTLEDR 258

Query: 407 LIELEKE-GRLLEAQRLEQRITYDLEMLETT-GSCQSIENYSRYLTGR 452
             EL+   G+        +    ++E L+    + Q IE  S   +G+
Sbjct: 259 WAELKTILGKPTRHFSALETFLDNIEPLQKLFWTQQPIEELSPITSGK 306



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 67/189 (35%), Gaps = 15/189 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVD----PPVEIRSARTQVEDVYDEINLAAQ 580
            + +SATP    L        +  +  T   D      V    +   +++          
Sbjct: 725 CLTLSATPIPRTLYMSLIGARDMSVINTPPQDRQPIKTVISEPSDELLKNALLREFARDG 784

Query: 581 QGLRILLTVLT-KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q   I   V T   M   + + L +  I +  +H ++K  E   +    + G+ D+L+  
Sbjct: 785 QAYLIHNRVETLPNMYRRVKKLLPQARIDI--VHGQMKPAEIDTVFHHFKNGEIDILIAT 842

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  AD+ G       L Q  GR  R        +      S   
Sbjct: 843 TIVESGIDIPNANTILIDRADRFGL----ADLYQLRGRVGRWNRRAFAYFLIPKFHS--- 895

Query: 700 AIDETTRRR 708
            + E +R+R
Sbjct: 896 -LPEISRKR 903


>gi|71066039|ref|YP_264766.1| transcription-repair coupling factor [Psychrobacter arcticus 273-4]
 gi|71039024|gb|AAZ19332.1| transcription-repair coupling factor [Psychrobacter arcticus 273-4]
          Length = 1243

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/342 (17%), Positives = 118/342 (34%), Gaps = 43/342 (12%)

Query: 176 VTGSGKTFTMAKVIEA-----MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           V G+  +  +A +++A       R  +V+  ++    Q+ +E         V        
Sbjct: 31  VHGAVSSLWLASLVQAPIWNVADRLKVVVTRDQNQLNQIETELAFCGVDAHV-------- 82

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                   P  +T    E S ++ I   R +    +   +  +++S  + ++ +      
Sbjct: 83  -------FPDWETLTYDELSPHQDIVSERINLLTDMPT-SGVLLISVQALMHRVAPPSWL 134

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
                 L +GD  +     + L K  Y+  D     G F V G  I+IF +  +    R+
Sbjct: 135 IGQHFDLSVGDRFDINTQRALLAKAGYRAVDNVFEPGEFAVRGSIIDIF-AMGQPFPLRL 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK--YIKEELKMRLI 408
            +F ++IE I  F P T + +   +   + + +     + +L+   K   I + +K +  
Sbjct: 194 DLFDDEIETIRFFNPQTQRTLTIDDLKAMMSGNDSSMGKESLSLLHKLPDISKPIK-QFQ 252

Query: 409 ELEKEGRLLEAQRLEQRITY-------------DLEMLETTGSCQSIENYSRYLTGRNPG 455
            L  +   L+  R   R  +               + +    +   +E Y          
Sbjct: 253 ILPAKEFPLDEGRETFRTNFAAMFPNSNSRKFELHKDVMAGIASSGLEYYQPLFFDLKDW 312

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIP-----QISGMYRGDFH 492
               +LF Y+P D+L   DE           QI   Y    H
Sbjct: 313 MVESSLFSYLPSDTLFITDELINEKQADYWSQIQRRYEERRH 354



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 72/193 (37%), Gaps = 11/193 (5%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            ++ ++ATP    L      + +  I  T              + E +  + I     +G 
Sbjct: 841  SMSMTATPIPRTLNMALSGMRDMSIIATPPARRLAIKTFVMQKTEALMKEAILRELLRGG 900

Query: 584  RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
            ++ L        E + E + E     R    H +++  +  ++++     KF+VL+   +
Sbjct: 901  QVYLLHNDVASIERMAETIRELVPEARVGVAHGQMQERQLEQVMQQYYHKKFNVLICSTI 960

Query: 642  LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            +  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K ++   
Sbjct: 961  IETGIDVPNANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYCYLLVPSIKGLKG-- 1014

Query: 702  DETTRRREKQLEH 714
                +RR   +E 
Sbjct: 1015 --DAKRRLHAIER 1025


>gi|56707766|ref|YP_169662.1| transcription-repair coupling factor [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670237|ref|YP_666794.1| transcription-repair coupling factor [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456837|ref|ZP_03665310.1| transcription-repair coupling factor [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254874578|ref|ZP_05247288.1| transcription-repair coupling factor, ATP-dependent [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|56604258|emb|CAG45277.1| Transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320570|emb|CAL08660.1| Transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. tularensis FSC198]
 gi|254840577|gb|EET19013.1| transcription-repair coupling factor, ATP-dependent [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282158938|gb|ADA78329.1| Transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 1141

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 71/447 (15%), Positives = 153/447 (34%), Gaps = 56/447 (12%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE--YFV 226
              ++    GS  +    + ++   +  +++  +   A ++Y E K    +N+     F 
Sbjct: 9   NDTVVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNNSKVDILFF 68

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
              +    + +    D      S   E + +M H        +   I+ S  + +  I  
Sbjct: 69  PNLEILPYDRFSASIDII----SRRQEILYKMTHQ------PQKTLIITSISNTLRKIAP 118

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                +    LK GD+++  +    L +  Y   +    +G F + G  I+I+P     V
Sbjct: 119 ASFIQKHSFILKTGDNLDITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPI-GSKV 177

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
           A+R+ +F N+I+ I E    + +    +++I I  +   V        A           
Sbjct: 178 AFRIDLFDNEIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFA----------- 226

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
              L+K  +L   + L   I      ++       IE Y          +   +L++Y+P
Sbjct: 227 ---LDKLNKLCGDKALNSTIA---TYIQNNEYFSGIEFYLPLFY-----DKLSSLYDYLP 275

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
             + + + ++      I         R          L    D   L F          I
Sbjct: 276 PSTNIHLVDN--ITNSIEAFSDEVKFRYNE-------LKHDSDRPILPF--------QEI 318

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPP--VEIRSARTQVEDVYDEINLAAQQGL- 583
             S        +Q + I   Q  +    +     +E  SA  ++ + + ++     +   
Sbjct: 319 FYSQQEIQDIYQQYKNIKWFQQPKSKSKILKVDHLEKISANYKLANPFKDLQQFIDKSNF 378

Query: 584 -RILLTVLTKRMAEDLTEYLYERNIRV 609
            +++ +  +   AE L E+L + N+ +
Sbjct: 379 DKVIFSTDSNGRAELLLEHLNKLNLNI 405



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 92/265 (34%), Gaps = 26/265 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +  I    P   +     ++     +  + + ++    +
Sbjct: 748 ILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDNNI--IREAVSRETIR 805

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +I          ++  E L E      I +   H ++   E  +++ D +  K+ +L+
Sbjct: 806 GGQIFYLYNKVETIQKKKEILQELFPRLRIAIA--HGQMSEKEIQKVMFDFKHNKYHILL 863

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I DA+  G  +    L Q  GR  R+ +            SI
Sbjct: 864 CTTIIETGIDIPNANTLIIEDANNLGLAQ----LHQLRGRVGRSHHQAYAYMLIPNEASI 919

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
               D   R        +        +   +I    + +  E +     +ID   L+L  
Sbjct: 920 TK--DALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSG----NIDGIGLNLYM 973

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEE 782
                 + +LR     A   LN EE
Sbjct: 974 DLLDKTIANLR-----AGKKLNIEE 993



 Score = 42.0 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTFT---MAKVIE 190
            ++   F     Y  + DQ +AI  + K  I ++   +L+ G  G GKT      A +  
Sbjct: 584 EEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLAT 643

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
             Q+   ++ P  ILA Q Y+ FK+ F + A
Sbjct: 644 QNQKQVAILVPTTILAQQHYNSFKDRFTNTA 674


>gi|254374445|ref|ZP_04989927.1| hypothetical protein FTDG_00614 [Francisella novicida GA99-3548]
 gi|151572165|gb|EDN37819.1| hypothetical protein FTDG_00614 [Francisella novicida GA99-3548]
          Length = 1141

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 154/447 (34%), Gaps = 56/447 (12%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE--YFV 226
              ++    GS  +    + ++   +  +++  +   A ++Y E K    +N+     F 
Sbjct: 9   NDTVVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNNSKVDILFF 68

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
              +    + +    D      S   E + +M H    +L      I+ S  + +  I  
Sbjct: 69  PNLEILPYDRFSASIDII----SRRQEILYKMTHQPQNTL------IITSISNTLRKIAP 118

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                +    LK GD++   +    L +  Y   +    +G F + G  I+I+P     V
Sbjct: 119 ASFIQEHSFILKTGDNLNITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPI-GSKV 177

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
           A+R+ +F N+I+ I E    + +    +++I I  +   V        A           
Sbjct: 178 AFRIDLFDNEIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFA----------- 226

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
              L+K  +L   + L   I      ++       IE Y          +   +L++Y+P
Sbjct: 227 ---LDKLNKLCGDKALNSTIA---TYIQNNEYFSGIEFYLPLFY-----DKLSSLYDYLP 275

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
             + + + ++      I         R          L    D R L F          I
Sbjct: 276 PSTNIHLVDN--ITNSIEAFSDEVKFRYNE-------LKHDSDRRILPF--------QEI 318

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPP--VEIRSARTQVEDVYDEINLAAQQGL- 583
             S        +Q + I   Q  +    +     +E  SA  ++ + + ++     +   
Sbjct: 319 FYSQQEIQDIYQQYKNIKWFQQPKSKSKILKVDHLEKISANYKLANPFKDLQQFIDKSNF 378

Query: 584 -RILLTVLTKRMAEDLTEYLYERNIRV 609
            +++ +  +   AE L E+L + N+ +
Sbjct: 379 DKVIFSTDSNGRAEVLLEHLNKLNLNI 405



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 91/265 (34%), Gaps = 26/265 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +  I    P   +     ++     +  + + ++    +
Sbjct: 748 ILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDNNI--IREAVSRETIR 805

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +I          ++  E L E      I +   H ++   E  +++ D +  K+ +L+
Sbjct: 806 GGQIFYLYNKVETIQKKKEILQELFPRLRIAIA--HGQMSEKEIQKVMFDFKHNKYHILL 863

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I DA+  G  +    L Q  GR  R+ +            SI
Sbjct: 864 CTTIIETGIDIPNANTLIIEDANNLGLAQ----LHQLRGRVGRSHHQAYAYMLIPNEASI 919

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
               D   R        +        +   +I    + +  E +     +ID   L+L  
Sbjct: 920 TK--DALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSG----NIDGIGLNLYM 973

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEE 782
                 + +L      A   LN EE
Sbjct: 974 DLLDKTIANL-----QAGKELNIEE 993



 Score = 44.3 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTFT---MAKVIE 190
            ++   F     Y  + DQ +AI  + K  I ++   +L+ G  G GKT      A +  
Sbjct: 584 EEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLAT 643

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
             Q+   ++ P  ILA Q Y+ FK+ F + AV
Sbjct: 644 QNQKQVAILVPTTILAQQHYNSFKDRFTNTAV 675


>gi|118497630|ref|YP_898680.1| transcription-repair coupling factor [Francisella tularensis subsp.
           novicida U112]
 gi|195536331|ref|ZP_03079338.1| transcription-repair coupling factor [Francisella tularensis subsp.
           novicida FTE]
 gi|118423536|gb|ABK89926.1| transcription-repair coupling factor [Francisella novicida U112]
 gi|194372808|gb|EDX27519.1| transcription-repair coupling factor [Francisella tularensis subsp.
           novicida FTE]
          Length = 1141

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 72/447 (16%), Positives = 154/447 (34%), Gaps = 56/447 (12%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE--YFV 226
              ++    GS  +    + ++   +  +++  +   A ++Y E K    +N+     F 
Sbjct: 9   NDTVVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNNSKVDILFF 68

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
              +    + +    D      S   E + +M H    +L      I+ S  + +  I  
Sbjct: 69  PNLEILPYDRFSASIDII----SRRQEILYKMTHQPQNTL------IITSISNTLRKIAP 118

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                +    LK GD+++  +    L +  Y   +    +G F + G  I+I+P     V
Sbjct: 119 ASFIQEHSFILKTGDNLDITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPI-GSKV 177

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
           A+R+ +F N+I+ I E    + +    +++I I  +   V        A           
Sbjct: 178 AFRIDLFDNEIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFA----------- 226

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
              L+K  +L   + L   I      ++       IE Y          +   +L++Y+P
Sbjct: 227 ---LDKLNKLCGDKALNSTIA---TYIQNNEYFSGIEFYLPLFY-----DKLSSLYDYLP 275

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
             + + + ++      I         R          L    D   L F          I
Sbjct: 276 PSTNIHLVDN--ITNSIEAFSDEVKFRYNE-------LKHDSDRPILPF--------QEI 318

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPP--VEIRSARTQVEDVYDEINLAAQQGL- 583
             S        +Q + I   Q  +    +     +E  SA  ++ + + ++     +   
Sbjct: 319 FYSQQEIQDIYQQYKNIKWFQQPKSKSKILKVDHLEKISANYKLANPFKDLQQFIDKSNF 378

Query: 584 -RILLTVLTKRMAEDLTEYLYERNIRV 609
            +++ +  +   AE L E+L + N+ +
Sbjct: 379 DKVIFSTDSNGRAELLLEHLNKLNLNI 405



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 92/265 (34%), Gaps = 26/265 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +  I    P   +     ++     +  + + ++    +
Sbjct: 748 ILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDNNI--IREAVSRETIR 805

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +I          ++  E L E      I +   H ++   E  +++ D +  K+ +L+
Sbjct: 806 GGQIFYLYNKVETIQKKKEILQELFPRLRIAIA--HGQMSEKEIQKVMFDFKHNKYHILL 863

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I DA+  G  +    L Q  GR  R+ +            SI
Sbjct: 864 CTTIIETGIDIPNANTLIIEDANNLGLAQ----LHQLRGRVGRSHHQAYAYMLIPNEASI 919

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
               D   R        +        +   +I    + +  E +     +ID   L+L  
Sbjct: 920 TK--DALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSG----NIDGIGLNLYM 973

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEE 782
                 + +LR     A   LN EE
Sbjct: 974 DLLDKTIANLR-----AGKELNIEE 993



 Score = 44.3 bits (103), Expect = 0.089,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTFT---MAKVIE 190
            ++   F     Y  + DQ +AI  + K  I ++   +L+ G  G GKT      A +  
Sbjct: 584 EEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLAT 643

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
             Q+   ++ P  ILA Q Y+ FK+ F + AV
Sbjct: 644 QNQKQVAILVPTTILAQQHYNSFKDRFTNTAV 675


>gi|75675705|ref|YP_318126.1| transcription-repair coupling factor [Nitrobacter winogradskyi
           Nb-255]
 gi|74420575|gb|ABA04774.1| transcription-repair coupling factor [Nitrobacter winogradskyi
           Nb-255]
          Length = 1174

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 78/452 (17%), Positives = 148/452 (32%), Gaps = 57/452 (12%)

Query: 180 GKTFTMAKVIE--------AMQRPAIVMAPNKILAAQLYSEFKN----FFPHNAVEYFVS 227
           G+  T+A V E         + R     A  +  A  L    ++         A+E+F S
Sbjct: 15  GRPLTLANVAEGAEGLVVSDLARAIKANATRRAAAVSLTVVCRDGPRMQQLARALEFFAS 74

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-----ERNDCIVVSSVSCIY 282
                Q     P  D       S +  +   R +    L      E    I+ +  + + 
Sbjct: 75  DISVMQ----FPAWDCQPYDRVSPHGGVLAQRLTTLARLSRLTGSETPLIILTTVNAILQ 130

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            + + E  +   + +  G+ V    + + L    Y R       G + V G  +++FPS+
Sbjct: 131 RVPAREIVASQALSVAPGNVVPMDSIAAWLEHNGYNRSSTVREPGEYAVRGGILDLFPSN 190

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
           L D   R   FG+ +E I  F P T + + +V ++ +   S +     T+          
Sbjct: 191 L-DHPVRFDFFGDSLESIRSFDPETQRTLFDVRSLDLVPISEFQFVTETIRRF------- 242

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
              R+  +   G         +R     E +        +E++      R       TLF
Sbjct: 243 ---RMGYVATFGAP-------ERDDLLYEAVSEGRRYPGMEHWLPLFHERM-----DTLF 287

Query: 463 EYIPEDSLLFVDESHVTIPQISGMYRGDFH--RKATLAEYGFRLPSC---MDNRPLRFEE 517
           +Y+ + + + ++               D+H  R+  L + G  +P      D   L  +E
Sbjct: 288 DYL-DGASIVIEPQGEDAASERFKQIADYHEARREPLEQAGGGVPYKPLPPDRLYLTPDE 346

Query: 518 WNCLRPTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           W        +V  TP     E          Q     G    P    +     E V   I
Sbjct: 347 WAKRLNEAALVRLTPFAMPDESVNIIDAGARQ-----GRNFAPERADTTLNVFESVGSHI 401

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
                   ++++T+ ++   + +   L +  +
Sbjct: 402 QALQAARKKVVVTLWSEGSRDRMASMLKDHGL 433



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 75/191 (39%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + +  I  +  VD    +R+     + +   + +     +
Sbjct: 774 HVLTLSATPIPRTLQLALTGVRDLSIIASPPVDRLA-VRTFVAPHDPLMIREALLRERYR 832

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ ++L +    ++V   H ++      +II     GK+DVL+  
Sbjct: 833 GGQAFYVVPRVSDLAEVKDFLDKHVPEMKVAVAHGQMPPTVIEDIISAFYDGKYDVLLST 892

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  +D  G  +    L Q  GR  R   SK+  YA     S   
Sbjct: 893 TIVESGLDIPTANTLIVHRSDMFGLAQ----LYQLRGRVGR---SKLRAYALFTLPSKHK 945

Query: 700 AIDETTRRREK 710
              +  RR + 
Sbjct: 946 ITAQAERRLKV 956


>gi|255318947|ref|ZP_05360172.1| transcription-repair coupling factor [Acinetobacter radioresistens
           SK82]
 gi|262378317|ref|ZP_06071474.1| transcription-repair coupling factor [Acinetobacter radioresistens
           SH164]
 gi|255303964|gb|EET83156.1| transcription-repair coupling factor [Acinetobacter radioresistens
           SK82]
 gi|262299602|gb|EEY87514.1| transcription-repair coupling factor [Acinetobacter radioresistens
           SH164]
          Length = 1153

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 68/473 (14%), Positives = 153/473 (32%), Gaps = 63/473 (13%)

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
           ++ E  ++  +++A N    AQL SE + +     +      ++    +   P  D   E
Sbjct: 36  EIAEQSRQLLVLVAKNNQHVAQLESELEFYGIKPII---FPDWEILPYDRLSPHQDIVSE 92

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           + + ++              + +   +++S+ +    +            +++G   + +
Sbjct: 93  RLAILSN-------------MPQQGILLLSASTLAQRVAPTSWILGEHFDIRVGQKFDLE 139

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +    LV+  Y   D     G F V G  ++I+ +  ++   R+ +F ++I+ +  F P 
Sbjct: 140 QQKLRLVQAGYLLVDTVYDHGEFAVRGSIMDIY-ASGQEAPIRIDLFDDEIDSLKFFDPE 198

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           T +   N+   K+     +                  + R  E        +        
Sbjct: 199 TQRTTSNLTQFKVLPAKEFPLKDGRST---------FRDRYAESFPTANPKK-------- 241

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF----VDESHVTIPQ 482
               + +    +   I+ Y      +   +    L  Y+P+ S++     +DE  +T  +
Sbjct: 242 NPIYQDVMEGIASPGIDFYLPLFFSKQSIQTQGMLSAYLPQHSIVITDRDLDECLITFWK 301

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542
                  D    A        LP   ++  L+      L            S + E+  G
Sbjct: 302 DVNRRYEDRRHNADQP----ILPP--EDLFLKPNALLELLNH--FPRIIASSEQFEEKAG 353

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           +I   +  P  L   P   +    QV++  D           +LL   +    E L + L
Sbjct: 354 VINMAVSEPPRLPVNPKHEKPFH-QVKEYIDNAQHP------VLLVTESAGRRESLRDAL 406

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
                      S +  +  +      +  ++ + +    L  GL I +   V 
Sbjct: 407 R----------STLGDIPTVANFNIFQNDQYKIAITTAPLERGLIINDQLTVI 449



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 92/264 (34%), Gaps = 50/264 (18%)

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
             +  L+ VDE H    +     +        L      +P     R L    ++ +R  
Sbjct: 725 FKDLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIP-----RTLNMA-FSGMRDL 778

Query: 525 TIVVSATP-------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN- 576
           +I+  ATP        ++  E     I E I+R                QV  +++E++ 
Sbjct: 779 SII--ATPPARRLAVKTFVQEHTDASIKEAILRELLR----------GGQVYFLHNEVDS 826

Query: 577 -LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                + +R L+                E  + V   H +++  E  ++++     +++V
Sbjct: 827 IERTAENIRALV---------------PEARVAVA--HGQMRERELEQVMQQFYHKQYNV 869

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K
Sbjct: 870 LVCSTIIETGIDVPNANTIIIERADKLGLAQ----LHQLRGRVGRSHHQAYAYLLVPSIK 925

Query: 696 SIQLAIDETTRRREKQLEHNKKHN 719
           +++   D   R    Q   N    
Sbjct: 926 ALKG--DAEKRLDAIQRASNLGAG 947



 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 85/233 (36%), Gaps = 33/233 (14%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q   ++ + V T    ++  E   +   +  +R+  +         
Sbjct: 638 GKTEVAMRAAFVAVQNNKQVAVLVPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKAH 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++ I+DL  GK D+++G + LL+E +   + GL+ + +  + G    +        +A R
Sbjct: 698 VKNIQDLADGKVDIVIGTHKLLQENVQFKDLGLMIVDEEHRFGVRDKERI------KAMR 751

Query: 681 NVNSKVILYADTITKSIQLA---------IDETTRRREKQLEHNKKHNINPQSVKEKIME 731
                + L A  I +++ +A         I     RR       ++H     S+KE I+ 
Sbjct: 752 ADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEH--TDASIKEAILR 809

Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR-----KQMHLAADNLN 779
            +    L       +  +   +  + +  +A +   R      QM      L 
Sbjct: 810 EL----LRGGQVYFLHNEVDSIERTAENIRALVPEARVAVAHGQMRE--RELE 856


>gi|332184209|gb|AEE26463.1| Transcription-repair coupling factor [Francisella cf. novicida
           3523]
          Length = 1142

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 108/299 (36%), Gaps = 31/299 (10%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           GS  +    + ++   +  +++  +   A ++Y E K     N           + P   
Sbjct: 18  GSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKDN-----PKIDILFFPNLE 72

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
           +   D +      I+ + + + H  T     +N  I+ S  + +  +       +    L
Sbjct: 73  ILPYDRFSASIDIISRRQEIL-HKMTH--QPQNTLIITSISNTLRKLAPTSFIQEHSFIL 129

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           K GD ++  +    L +  Y   +    +G F + G  I+I+P     VA+R+ +F +++
Sbjct: 130 KTGDKLDITKYKILLTEAGYTLVNNVFEKGEFSIRGSIIDIYPI-GSKVAFRIDLFDDEV 188

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           + I E    T +    +++I I  +   V        A+  +K     RL   +     +
Sbjct: 189 DSIKELNTETQRSGNQIQSINIMPSHELVYNDQNTTFALDKLK-----RLCGEKALNSTI 243

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES 476
                          +        IE Y          +   +L++Y+P+ + + + ++
Sbjct: 244 AT------------YIRYNEYFSGIEFYLPLFY-----DKLTSLYDYLPQSTNIHLVDN 285



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 91/265 (34%), Gaps = 26/265 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +  I    P   +     ++     +  + + ++    +
Sbjct: 748 ILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDNNI--IREAVSRETIR 805

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +I          ++  E L E      I +   H ++   E  +++ D +  K+ +L+
Sbjct: 806 GGQIFYLYNKVETIQKKKEILQELFPRLRIAIA--HGQMSEKEIQKVMFDFKHNKYHILL 863

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I DA+  G  +    L Q  GR  R+ +            SI
Sbjct: 864 CTTIIETGIDIPNANTLIIEDANNLGLAQ----LHQLRGRVGRSHHQAYAYMLIPNEASI 919

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
               D   R        +        +   +I    + +  E +     +ID   L+L  
Sbjct: 920 TK--DALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSG----NIDGIGLNLYM 973

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEE 782
                 + +L      A   LN EE
Sbjct: 974 DLLDKTIANL-----KAGKELNIEE 993



 Score = 42.0 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTFT---MAKVIE 190
            ++   F     Y  + DQ  AI  + K  I ++   +L+ G  G GKT      A +  
Sbjct: 584 EEEYLRFCADFPYEETPDQLLAINDVFKDMISTKPMDRLICGDVGFGKTEIAMRAAFLAT 643

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
             Q+   ++ P  ILA Q Y+ FK+ F + AV
Sbjct: 644 QNQKQVAILVPTTILAQQHYNSFKDRFTNTAV 675


>gi|332162083|ref|YP_004298660.1| transcription-repair coupling factor [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325666313|gb|ADZ42957.1| transcription-repair coupling factor [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 1148

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 120/297 (40%), Gaps = 35/297 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE    P +++ P+   A +L  E + F PH       S ++    +
Sbjct: 22  LTGSACAVECAEIIERHDGPVMLITPDMQTALRLRDEIQQFSPHPVNTL--SDWETLPYD 79

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           ++ P  D        I+ ++  + H  T         I++   + +  +   E      +
Sbjct: 80  SFSPHQDI-------ISARLSCLYHLPT----MERGVIILPINTLMQRVCPHEFLHGHAL 128

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K G  + + +L + L +  Y+  D  +  G F   G  ++++P   E+  +R+  F +
Sbjct: 129 VMKKGQHLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEE-PYRIDFFDD 187

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ +  F   + + +  V+ I +     +   +     A++  + + + +         
Sbjct: 188 DIDSLRVFDVDSQRTLSEVDQINLLPAHEFPIDK----NAIELFRSQWREQ--------- 234

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             E +R  + I    + +        IE +          +P PTLF Y+PE++LL 
Sbjct: 235 -FEVRRDAEHI---YQQVSKGIWPAGIEYWQPLF----FNQPLPTLFSYLPENTLLI 283



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E  T+ L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKATQKLAELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 922


>gi|304391611|ref|ZP_07373553.1| transcription-repair coupling factor [Ahrensia sp. R2A130]
 gi|303295840|gb|EFL90198.1| transcription-repair coupling factor [Ahrensia sp. R2A130]
          Length = 1169

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 89/528 (16%), Positives = 181/528 (34%), Gaps = 68/528 (12%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ-RPAIVMAPNKILAAQLYSEFKNFFPH 219
           +  +    + Q+L           +A   E    RP + +A +   AA L      F P 
Sbjct: 21  VGAVPDGYEAQVL--------AQILAWQQENAPDRPLVYIARDGQRAADLEQTLPFFAPW 72

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
             +E+  ++ D    +   P  D    + ++++         A  +  ++   + ++  S
Sbjct: 73  AEIEHLPAW-DCLPYDRVSPSNDVLANRIATLSG-------LARGTKSDKPRLLTLTPNS 124

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
            +  +      ++ + ++  G  V+   L+  L    ++R       G F V G  ++++
Sbjct: 125 IMQRVPPKAFMTEQVKRIAPGGRVDMDALIIWLSGNGFERTPTVREAGEFAVRGGILDLY 184

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
               E    R+  FG+ +E +  F P T + +  ++ + +   S  V  + ++       
Sbjct: 185 APGTE-APVRLDFFGDTLETLRSFDPSTQRTLAQLKELTLAPMSEVVLEKSSIARF---- 239

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR-YLTGRNPGEPP 458
                 R   L   G       L        E +        +E++   +  G       
Sbjct: 240 ------RTNYLSTFGAATRDDAL-------YEAVSEGRRYAGLEHWLPLFFDGLE----- 281

Query: 459 PTLFEYIPEDSLLFVDESHV--TIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            T+F+Y+P D++   D +HV     + + +      R+  L             +P +  
Sbjct: 282 -TVFDYLP-DAIFVADLTHVEALEQRYAQIEDHYEARQRGLDGSEDGGAPYKPVKPDQLY 339

Query: 517 EWNCLRP------TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ--V 568
               L          I +SA       +  QG  V  +    G      E RSA      
Sbjct: 340 LSPQLIQAGLQARQLITLSAFDAP---DFSQGERVINLHAKQGR-SFAAE-RSAGNVNIF 394

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + + D        G R+ +   +    + L + L E  +        VKT++ I  +  L
Sbjct: 395 QALTDHAANLRAAGKRVAIASWSGGARDRLVQVLDEHGLT------NVKTVDNIAELDAL 448

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           + G   + V    + +G++ PE  L  I + D  G    K +  +  G
Sbjct: 449 KKGTTGLAVL--KIEQGIEDPE--LAIIGEQDFLGDRLVKRNRSKRKG 492



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 72/194 (37%), Gaps = 19/194 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
             + +SATP    L+     + E  +  T  VD       +      V  V + +     
Sbjct: 774 HVLTLSATPIPRTLQLALTGVRELSLITTAPVDRMAVRTFVMPFDGVV--VREALLRERY 831

Query: 581 QGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +G +           +   E L E++ E  + V   H ++   E  +++     G++DVL
Sbjct: 832 RGGQSFYVCPRLADIRGREEWLAEHVPELKVAVA--HGQMPPGELEDVMNAFYEGRYDVL 889

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +   ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L        
Sbjct: 890 LSTTIVESGLDIPTANTMIVHRADMFGLAQ----LYQMRGRVGRSKTRAYALLTLPP--- 942

Query: 697 IQLAIDETTRRREK 710
            +  +  T +RR K
Sbjct: 943 -KKVLTATAQRRLK 955


>gi|134302051|ref|YP_001122020.1| transcription-repair coupling factor [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049828|gb|ABO46899.1| transcription-repair coupling factor [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 1141

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 72/447 (16%), Positives = 154/447 (34%), Gaps = 56/447 (12%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE--YFV 226
              ++    GS  +    + ++   +  +++  +   A ++Y E K    +N+     F 
Sbjct: 9   NDTVVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNNSKVDILFF 68

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
              +    + +    D      S   E + +M H    +L      I+ S  + +  I  
Sbjct: 69  PNLEILPYDRFSASIDII----SRRQEILYKMTHQPQNTL------IITSISNTLRKIAP 118

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                +    LK GD+++  +    L +  Y   +    +G F + G  I+I+P     V
Sbjct: 119 ASFIQEHSFILKTGDNLDITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPI-GSKV 177

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
           A+R+ +F N+I+ I E    + +    +++I I  +   V        A           
Sbjct: 178 AFRIDLFDNEIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFA----------- 226

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
              L+K  +L   + L   I      ++       IE Y          +   +L++Y+P
Sbjct: 227 ---LDKLNKLCGDKALNSTIA---TYIQNNEYFSGIEFYLPLFY-----DKLSSLYDYLP 275

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
             + + + ++      I         R          L    D   L F          I
Sbjct: 276 PSTNIHLVDN--ITNSIEAFSDEVKFRYNE-------LKHDSDRPILPF--------QEI 318

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPP--VEIRSARTQVEDVYDEINLAAQQGL- 583
             S        +Q + I   Q  +    +     +E  SA  ++ + + ++     +   
Sbjct: 319 FYSQQEIQDIYQQYKNIKWFQQPKSKSKILKVDHLEKISANYKLANPFKDLQQFIDKSNF 378

Query: 584 -RILLTVLTKRMAEDLTEYLYERNIRV 609
            +++ +  +   AE L E+L + N+ +
Sbjct: 379 DKVIFSTDSNGRAELLLEHLNKLNLNI 405



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 92/265 (34%), Gaps = 26/265 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +  I    P   +     ++     +  + + ++    +
Sbjct: 748 ILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDNNI--IREAVSRETIR 805

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +I          ++  E L E      I +   H ++   E  +++ D +  K+ +L+
Sbjct: 806 GGQIFYLYNKVETIQKKKEILQELFPRLRIAIA--HGQMSEKEIQKVMFDFKHNKYHILL 863

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I DA+  G  +    L Q  GR  R+ +            SI
Sbjct: 864 CTTIIETGIDIPNANTLIIEDANNLGLAQ----LHQLRGRVGRSHHQAYAYMLIPNEASI 919

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
               D   R        +        +   +I    + +  E +     +ID   L+L  
Sbjct: 920 TK--DALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSG----NIDGIGLNLYM 973

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEE 782
                 + +LR     A   LN EE
Sbjct: 974 DLLDKTIANLR-----AGKELNIEE 993



 Score = 42.0 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTFT---MAKVIE 190
            ++   F     Y  + DQ +AI  + K  I ++   +L+ G  G GKT      A +  
Sbjct: 584 EEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLAT 643

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
             Q+   ++ P  ILA Q Y+ FK+ F + A
Sbjct: 644 QNQKQVAILVPTTILAQQHYNSFKDRFTNTA 674


>gi|291456465|ref|ZP_06595855.1| transcription-repair coupling factor [Bifidobacterium breve DSM
           20213]
 gi|291381742|gb|EFE89260.1| transcription-repair coupling factor [Bifidobacterium breve DSM
           20213]
          Length = 1196

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 97/261 (37%), Gaps = 24/261 (9%)

Query: 153 QPAAIAQLLKG---IHSREKVQLLLGVTGSGKTFTMAKVIEAMQ----RPAIVMAPNKIL 205
           Q     QL  G   +       +L GV    +    A + + +     +P +++  +   
Sbjct: 33  QDKVFHQLAVGDIEVSDDVDNSILAGVPEGLRPALAAAIAQGVNGGAGKPVVLVVASGRE 92

Query: 206 AAQLYSEFKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
           A +     ++++  +  +      ++    E   PR DT   + +       R++H +  
Sbjct: 93  AEETVGSLRSWYDGDPNDIAQLEAWETLPHERLSPRADTVASRMAVF----RRLKHPSDA 148

Query: 265 SLLERNDCIVVSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           + +     I+V  +  +      G+G VE          +G+ +   E    L++  Y R
Sbjct: 149 NPMFGPIRILVMPIRSLIQPVVQGLGDVEPLV-----FTVGEDLPLDEAAKRLIENAYTR 203

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIK 378
            ++ + RG F V G  +++FP        R+  FG++I+ I EF+    +     ++TI 
Sbjct: 204 VELVMDRGEFAVRGGILDVFPP-TAPHPVRIEFFGDEIDTIKEFHASDQRTYGEGLKTIW 262

Query: 379 IYANSHYVTPRPTLNTAMKYI 399
             A             A   I
Sbjct: 263 ATACRELQLTDAVRTRAKALI 283



 Score = 42.8 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 63/179 (35%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 798 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAVRRELLRG 856

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +    + + ++      R    H ++   +  +IIRD      DVLV   
Sbjct: 857 GQVFYVHNRVQDISSIADKIHTLVPEARVGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTT 916

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    +K +  
Sbjct: 917 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPSKPMTE 971


>gi|308186433|ref|YP_003930564.1| Transcription-repair-coupling factor [Pantoea vagans C9-1]
 gi|308056943|gb|ADO09115.1| Transcription-repair-coupling factor [Pantoea vagans C9-1]
          Length = 1154

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 114/311 (36%), Gaps = 40/311 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + S +  QL  G + G+      A + E    P +++ P+   A +L  E + F      
Sbjct: 18  VKSGDHRQL--GQLIGAAHAVECASITERHAGPVLMITPDTQTALRLLDEIRQFTD---- 71

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                      P  ++   +T      S ++ I   R S    L      +++  V+ + 
Sbjct: 72  ----------LPVVHLADWETLPYDSFSPHQDIISARLSTLYQLPVMQSGMLIMPVNTLM 121

Query: 283 GIGSVESYSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                 S+     + +K G  + +  L   L +  Y+  D  +  G +   G  +++FP 
Sbjct: 122 QRVCPHSFLHGHALVMKQGQKLSRDRLRDQLEQAGYRHVDQVMEHGEYATRGALLDLFPM 181

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
              D  +R+  F ++I+ +  F     + +  V  I +     + + +     A++  + 
Sbjct: 182 -GSDQPYRIDFFDDEIDSLRLFDVDNQRTLEAVAEINLLPAHEFPSDK----AAIELFRS 236

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             +             E++ + Q+++              IE +          +P P+L
Sbjct: 237 RWRE------IFDVRRESEHIYQQVSK-------GTLPAGIEYWQPLF----FEQPLPSL 279

Query: 462 FEYIPEDSLLF 472
           F Y+P+++L+ 
Sbjct: 280 FSYLPDNTLIV 290



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  + + I     +
Sbjct: 758 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDDLV--IREAILREVLR 815

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E   + L +     R    H +++  E   ++ D    +F+VLV  
Sbjct: 816 GGQVYYLYNDVENIEKAAQRLSDLVPEARVAIGHGQMRERELERVMNDFHHQRFNVLVCT 875

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           KS+
Sbjct: 876 TIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKSM 929


>gi|300870408|ref|YP_003785279.1| transcription-repair coupling factor [Brachyspira pilosicoli
           95/1000]
 gi|300688107|gb|ADK30778.1| transcription-repair coupling factor [Brachyspira pilosicoli
           95/1000]
          Length = 1196

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 76/507 (14%), Positives = 157/507 (30%), Gaps = 86/507 (16%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           + G+ G G +   A + +   +  +++  ++  A  L      +   N   Y+   YD  
Sbjct: 31  IYGIKGGGDSLFFAALFKDKNKSLMIIKDDENEAMLLSQALNFYNIEN---YYFPDYDSV 87

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYS 291
                 P TD   +            R S    L+  +  I+++++  I   + + E+  
Sbjct: 88  PFTKMSPITDIVQD------------RLSILYKLINEDKFILITTIKAISRKLPNKETLK 135

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
              + +K+ D +    L  +L    Y  +      GT  V G  I+I+     +   R+ 
Sbjct: 136 NNTINIKVNDKLNIDSLRLNLYDLGYVIEREVSEVGTCAVRGSIIDIYSILYNN-PIRIE 194

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +F +++E I  F    G+  +NVE I IY     +     +   +     ELK  + + +
Sbjct: 195 LFDDEVESIRFFDIEDGKSYKNVEEITIYPVREAIYKDSLVEEFLNN-DSELKDDIQKSK 253

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
                                          EN               T+F+Y  E+ ++
Sbjct: 254 --------------------------YFAGSENLLGVFNKDLQ-----TIFDYTNEN-II 281

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF---EEWNCLRPTTIVV 528
           F D+      ++  +            +      S  DN    +     +  +   TI +
Sbjct: 282 FTDDILKLKNKLINVLSTTEEN---FNDIDNIFKSFYDNINSLYIDTNYFEEIAKNTINL 338

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           S  P   +    +    E +              S ++++ +  D I    ++     + 
Sbjct: 339 S--PFIVDNNIHKFSFEEGV--------------SFKSKLTEFLDYIKDYRKKDY--FII 380

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR------------DLRLGKFDVL 636
           + T    +    Y    N+  + + SE         I             D    K +  
Sbjct: 381 LSTSHYDQAKRFYKIMDNLEPKLIASEENDNNEESKIAEENNIIDSEEKLDFSNNKNNFY 440

Query: 637 VGINLLREGLDIPECGLVAILDADKEG 663
           +       G    +   + I D +  G
Sbjct: 441 IITTQSASGFIKDDIKTIFIADWEVFG 467



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 72/217 (33%), Gaps = 14/217 (6%)

Query: 506 SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSA 564
                  L+   +       + +SATP    L     GI    II    L   PV+    
Sbjct: 748 GVKHKEALKKLRFE---TDVLTLSATPIPRTLNMALTGIRDISIIETPPLNRIPVKTYVM 804

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERI 622
               + V + I    ++  ++          E     + +   +      H  +  ++  
Sbjct: 805 EFNEKTVVNAIERELKRNGQVFYLYNRIDTIESFALMIKKLCPKASICVAHGRMTGIQLE 864

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           +I+ D    K+D+LV   ++  G+DIP    + I  A+K G       L Q  GR  R+ 
Sbjct: 865 KIMSDFINHKYDILVSTTIIENGIDIPNANTILIDSANKLGLSE----LYQLRGRVGRSD 920

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
                           LA+ E   +R + +  +    
Sbjct: 921 REAYAYMFYPEN----LALTEVAYKRLQAISEHTDLG 953


>gi|190150660|ref|YP_001969185.1| transcription-repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189915791|gb|ACE62043.1| transcription-repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 712

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 120/319 (37%), Gaps = 38/319 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +  Q L  + G   T  +A+  E     ++V+ P+   A +L           A+  F  
Sbjct: 17  QDHQTLGNLIGHADTLVIAQATEQFNGLSVVVTPDTRTALRL---------EKALMQFSK 67

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGS 286
                 P +  P  +T      S ++ I   R SA   L + N  I +  +S  +  +  
Sbjct: 68  L-----PVSVFPDWETLPYDNFSPHQDIISARLSALFHLQKGNKQIFLLPISTLLQKVCP 122

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
               +  ++ +K GD    + L   L    Y+  +  +  G + V G  ++++P   E  
Sbjct: 123 PSYLANNVLLIKKGDRFSIQSLRLQLENAGYRAVEQVLEYGEYAVRGALLDLYPMGAES- 181

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ I  F   + + I  +  + +     +    PT +  +++ + + + +
Sbjct: 182 PFRLDFFDDEIDSIRTFDADSQRTIAEINEMNLLPAHEF----PTDSNGIEHFRSKFREQ 237

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             E+ +     E + + Q+++              IE +          E   +LF+Y+ 
Sbjct: 238 FGEIRR-----EPEHIYQQVSK-------GILNAGIEYWQPLFF-----EEMASLFDYLA 280

Query: 467 EDS-LLFVDESHVTIPQIS 484
           E++  +  D       Q  
Sbjct: 281 ENTLFITFDGIAEKAEQFH 299


>gi|318606131|emb|CBY27629.1| transcription-repair coupling factor [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 1148

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 120/297 (40%), Gaps = 35/297 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE    P +++ P+   A +L  E + F PH       S ++    +
Sbjct: 22  LTGSACAVECAEIIERHDGPVMLITPDMQTALRLRDEIQQFSPHPVNTL--SDWETLPYD 79

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           ++ P  D        I+ ++  + H  T         I++   + +  +   E      +
Sbjct: 80  SFSPHQDI-------ISARLSCLYHLPT----MERGVIILPINTLMQRVCPHEFLHGHAL 128

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K G  + + +L + L +  Y+  D  +  G F   G  ++++P   E+  +R+  F +
Sbjct: 129 VMKKGQHLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEE-PYRIDFFDD 187

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ +  F   + + +  V+ I +     +   +     A++  + + + +         
Sbjct: 188 DIDSLRVFDVDSQRTLSEVDQINLLPAHEFPIDK----NAIELFRSQWREQ--------- 234

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             E +R  + I    + +        IE +          +P PTLF Y+PE++LL 
Sbjct: 235 -FEVRRDAEHI---YQQVSKGIWPAGIEYWQPLFFS----QPLPTLFSYLPENTLLI 283



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E  T+ L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKATQKLAELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 922


>gi|221198238|ref|ZP_03571284.1| transcription-repair coupling factor [Burkholderia multivorans
           CGD2M]
 gi|221209180|ref|ZP_03582172.1| transcription-repair coupling factor [Burkholderia multivorans
           CGD2]
 gi|221170918|gb|EEE03373.1| transcription-repair coupling factor [Burkholderia multivorans
           CGD2]
 gi|221182170|gb|EEE14571.1| transcription-repair coupling factor [Burkholderia multivorans
           CGD2M]
          Length = 1156

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 146/453 (32%), Gaps = 61/453 (13%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFF 217
           +  +   ++     G  GS     +A+ +   +       V+  N + A +L  E   F 
Sbjct: 13  VARVKPGQRFAFD-GTHGSADALAIARYLADNREHVPLLAVICANAVDAQRLSQEIGYFS 71

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVS 276
           P   V               +P  +T      S ++ +   R +    L E     ++V 
Sbjct: 72  PDARVRL-------------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVP 118

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + + +Y +      +        G+ +++ +L S L    Y+     +  G + V G  I
Sbjct: 119 ATTALYRMPPASFMAAYTFAFAQGERLDEAKLKSQLTLAGYEHVSQVVRPGEYCVRGSLI 178

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++FP     + +R+ +F + ++ I  F P T + +  V  +++     +           
Sbjct: 179 DLFPM-GSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA----- 232

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
              +   + R  E  +                  + +        IE Y          +
Sbjct: 233 ---RTAFRSRWRETFEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----D 275

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              TLF Y+P+++ L        +      +  D  ++     +    P           
Sbjct: 276 ETATLFHYLPQNAHLVFAGD---LDAAIRRFTADTRQRYAFLSHDRERP----------- 321

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
               L P  + +S     + L +    +V       G      E+ +     +D    + 
Sbjct: 322 ---ILEPQRLFLS-DDDFFTLAKPFARLVLPAQPAGGWATALPEL-TVDRHADDPLAALR 376

Query: 577 LAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIR 608
              +  G R+LLTV +    E + + L E  +R
Sbjct: 377 TFVETSGKRVLLTVESAGRRETILQLLAEHRLR 409



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 755 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 812

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L E     R +  H ++   E   ++RD    + +VL+  
Sbjct: 813 GGQVYFLHNEVETIENRKAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +++  
Sbjct: 873 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQALTK 928

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 929 ---QAQRRLEAIQQME 941


>gi|187923864|ref|YP_001895506.1| transcription-repair coupling factor [Burkholderia phytofirmans
           PsJN]
 gi|187715058|gb|ACD16282.1| transcription-repair coupling factor [Burkholderia phytofirmans
           PsJN]
          Length = 1160

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 113/340 (33%), Gaps = 63/340 (18%)

Query: 144 QTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK--VIEAMQRPAIVMAP 201
            + Y P    P A+      + + ++     G  GS     +A+  +    + P + +  
Sbjct: 7   SSQYSP----PVAL------VKAGQRFAFD-GTHGSSDALLIARYHLAYREKVPLLAVVC 55

Query: 202 -NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            + + A +L  E   F P   V               +P  +T      S ++ +   R 
Sbjct: 56  ESAVDAQRLAQEIGFFAPEARVRL-------------LPDWETLPYDTFSPHQDLVSERL 102

Query: 261 SATRSLLERND-CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +    L E     ++V + + +Y +      +        G+ +++  + + L    Y+ 
Sbjct: 103 ATLHDLGEGRCDILLVPATTALYRMPPASFLAAYTFSFAQGERLDEARIKAQLTLAGYEH 162

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
               +  G + V G  ++++P     + +R+ +F + ++ I  F P T + +  V+ +++
Sbjct: 163 VSQVVRPGEYCVRGSLLDLYPM-GSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVKDVRL 221

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD------LEML 433
                +                         ++  R     R  +    D       + +
Sbjct: 222 LPGREFP-----------------------FDEAARTAFRSRWRETFEGDPSRAAIYKDI 258

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
                   IE Y          E   TLF Y+PE + L  
Sbjct: 259 GNGVPSAGIEYYLPLFF-----EDTATLFHYLPEGAQLAF 293



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 756 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDSV--IREAMLRELKR 813

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+  + L       R    H ++   E   ++RD    + +VL+  
Sbjct: 814 GGQVYFLHNEVETIENRRQMLEALVPEARIAVAHGQMHERELERVMRDFVAQRANVLLCT 873

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     Y+  +    Q 
Sbjct: 874 TIIETGIDVPSANTILIHRADKFGLAQ----LHQLRGRVGRSHHQ---AYSYLLVHDPQG 926

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 927 LTKQAQRRLEAIQQME 942


>gi|225629075|ref|ZP_03787108.1| transcription-repair coupling factor [Brucella ceti str. Cudo]
 gi|254705928|ref|ZP_05167756.1| transcription-repair coupling factor [Brucella pinnipedialis
           M163/99/10]
 gi|254711152|ref|ZP_05172963.1| transcription-repair coupling factor [Brucella pinnipedialis B2/94]
 gi|254712390|ref|ZP_05174201.1| transcription-repair coupling factor [Brucella ceti M644/93/1]
 gi|254715462|ref|ZP_05177273.1| transcription-repair coupling factor [Brucella ceti M13/05/1]
 gi|256029533|ref|ZP_05443147.1| transcription-repair coupling factor [Brucella pinnipedialis
           M292/94/1]
 gi|260167377|ref|ZP_05754188.1| transcription-repair coupling factor [Brucella sp. F5/99]
 gi|261217195|ref|ZP_05931476.1| transcription-repair coupling factor [Brucella ceti M13/05/1]
 gi|261313356|ref|ZP_05952553.1| transcription-repair coupling factor [Brucella pinnipedialis
           M163/99/10]
 gi|261318744|ref|ZP_05957941.1| transcription-repair coupling factor [Brucella pinnipedialis B2/94]
 gi|261320066|ref|ZP_05959263.1| transcription-repair coupling factor [Brucella ceti M644/93/1]
 gi|261756785|ref|ZP_06000494.1| transcription repair coupling factor [Brucella sp. F5/99]
 gi|265986542|ref|ZP_06099099.1| transcription-repair coupling factor [Brucella pinnipedialis
           M292/94/1]
 gi|225615571|gb|EEH12620.1| transcription-repair coupling factor [Brucella ceti str. Cudo]
 gi|260922284|gb|EEX88852.1| transcription-repair coupling factor [Brucella ceti M13/05/1]
 gi|261292756|gb|EEX96252.1| transcription-repair coupling factor [Brucella ceti M644/93/1]
 gi|261297967|gb|EEY01464.1| transcription-repair coupling factor [Brucella pinnipedialis B2/94]
 gi|261302382|gb|EEY05879.1| transcription-repair coupling factor [Brucella pinnipedialis
           M163/99/10]
 gi|261736769|gb|EEY24765.1| transcription repair coupling factor [Brucella sp. F5/99]
 gi|264658739|gb|EEZ29000.1| transcription-repair coupling factor [Brucella pinnipedialis
           M292/94/1]
          Length = 1170

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 77/537 (14%), Positives = 175/537 (32%), Gaps = 80/537 (14%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPNKI 204
           +   G +P AIA        + +  ++ GV    + F +A+++E +    P + +  +  
Sbjct: 4   FSKLGLKPGAIAN-------KGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQ 56

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYY-DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
             A L        P   V +  ++    Y   +             S    + +  H A 
Sbjct: 57  RIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCALKKAPHPA- 115

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                    I+ ++ + +  +    +  + ++  + G+ ++  +L + L +  ++R    
Sbjct: 116 --------VILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTV 167

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G + V G  ++++    E+   R+  FG+ +E I  F P + +     +   +   S
Sbjct: 168 RDIGEYAVRGGILDLYAPGAEE-PLRLDFFGDTLETIRAFDPASQRTTSTRKEFVLQPMS 226

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
                   ++            R   +   G         QR     + +        +E
Sbjct: 227 EITLSSDMISRF----------RKNYVAMFGAP-------QRDDALYQAISEGRRFAGME 269

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           ++              T+F++      + V   H+    ++  +                
Sbjct: 270 HWLPLFYDNLE-----TVFDH---AGPMPVVFDHLVHEALTERHTMVVDHYEARLRQAEG 321

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD------- 556
             +  D  P +      ++P  + +  TPG  E E  +   +   + P G  +       
Sbjct: 322 KEAGSDAVPYKP-----VKPEMLYL--TPGQVE-EAAEAAGLRIDLTPFGAPEVSGRTII 373

Query: 557 --------PPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                      E R+A      E V   I      G ++L+   T+   + L + L E  
Sbjct: 374 HADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEGSLDRLCQVLDEHG 433

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +       +++T++R+  ++ L   K    V   +L          LV + + D  G
Sbjct: 434 LE------KIETVDRLSTVKALSRDK----VTAAVLAVESGFDAGDLVVVAEQDILG 480



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 775  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPLVIRETLLRERYR 833

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       D+ E+L E    ++V   H ++      +I+     G++DVL+  
Sbjct: 834  GGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 893

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 894  TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 946

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 947  -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 987

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 988  QSGHIKEVGFELYQQMLEEA 1007


>gi|121602625|ref|YP_989090.1| transcription-repair coupling factor [Bartonella bacilliformis
           KC583]
 gi|120614802|gb|ABM45403.1| transcription-repair coupling factor [Bartonella bacilliformis
           KC583]
          Length = 1163

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 74/459 (16%), Positives = 151/459 (32%), Gaps = 55/459 (11%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           +++  + +L G+    + F +A++   +   +P + +  ++   A L        P+  V
Sbjct: 11  NNQNDLIILDGIIDGVEAFALAQLSTEIAQGKPLVYVVRDETKIAHLQQALSFIEPNLPV 70

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
            +F ++ D    +   P       + S        + H +T         IV ++ + I 
Sbjct: 71  LHFPAW-DCLPYDRVSPAITITARRLSV-------LAHISTLRNNPHPAIIVTTANAIIQ 122

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +         I+ +++G  V+   L+  L +  ++R  I    G F V G  I+IF S 
Sbjct: 123 RLPPCAMIDNQILHVRVGQRVDMDHLIHYLERNNFERVGIVRDVGEFAVRGGIIDIF-SP 181

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            E    R+  FG+ +E I  F   T + I+N     + + S  +     ++   +     
Sbjct: 182 SEVEPSRLDFFGDTLETIRVFDTETQRTIKNRTDFFLQSMSEVILTPELISRFKRN---- 237

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
                  +   G   +   L        E L        +E++  +       E     F
Sbjct: 238 ------YISTFGVPQKNDTL-------YEALSQGRRVAGMEHWLPFFY-----EKLDNFF 279

Query: 463 EYIPEDSLLFVD--------ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
           +Y   +  +  +        E +  I       +   + K +   Y    P  +  R   
Sbjct: 280 DYCG-NFPIIFENLIQEALIERYRLIEDYYADRKEHENDKESDVSYHPVEPHLLYMRLEE 338

Query: 515 FEEWNCLRPTTI-----VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
             E        I      V  T     +     I     ++     D  + +        
Sbjct: 339 VLECAQRSGQRIDFTPFNVPKTSEQITVFHANVIPGYDFVKERNAQDKNIFL-------- 390

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
            V D I+     G +ILL   ++   + L + L E  ++
Sbjct: 391 SVVDHISSLQSAGKKILLACWSEGSMDRLLQVLDEYGLK 429



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 75/191 (39%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L      + E  +  T  +D    +R+  +  + +   + +     +
Sbjct: 769 HVLTLSATPIPRTLGLALSGVRELSLITTPPIDRMA-VRTFISPFDALVIRETLLREYYR 827

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +             + EYL +    ++++  H ++   +  +I+     GK+DVL+  
Sbjct: 828 GGQSFYVCPRISDLSYVEEYLKKHVPELKFVIAHGQMPAGQLDDIMNAFYDGKYDVLLST 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  A+  G     ++L Q  GR  R+      L+     K +  
Sbjct: 888 TIIESGLDIPTANTLIVHRAEMFGL----SALYQLRGRVGRSKQRAYALFTFPSNKVLTT 943

Query: 700 AIDETTRRREK 710
           A     RR + 
Sbjct: 944 A---AQRRLKI 951


>gi|134295974|ref|YP_001119709.1| transcription-repair coupling factor [Burkholderia vietnamiensis
           G4]
 gi|134139131|gb|ABO54874.1| transcription-repair coupling factor [Burkholderia vietnamiensis
           G4]
          Length = 1151

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 109/345 (31%), Gaps = 49/345 (14%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA---IVMAPNKILAAQLYSEFKNFF 217
           +  +   ++     G  GS     +A+ +   +       V+  N + A +L  E + F 
Sbjct: 13  VARVKPGQRFIFD-GAHGSADALAIARYLAENRDAVPLLAVICANAVDAQRLSQELRYFS 71

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVS 276
           P   V               +P  +T      S ++ +   R +    L E     ++V 
Sbjct: 72  PDARVRL-------------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVP 118

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + + +Y +      +        G+ +++ +L + L    Y+     +  G + V G  I
Sbjct: 119 ATTALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLI 178

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +++P     + +R+ +F + ++ I  F P T + +  V  +++     +           
Sbjct: 179 DLYPM-GSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAA----- 232

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
              +   + R  E  +                  + +        IE Y          +
Sbjct: 233 ---RTAFRSRWRETFEGD---------PSRAPIYKDIGNGVPSAGIEYYLPLFF-----D 275

Query: 457 PPPTLFEYIPE--------DSLLFVDESHVTIPQISGMYRGDFHR 493
              TLF Y+P+        D    +        Q       D  R
Sbjct: 276 ETATLFHYLPQAAHLVFTGDLEASIRRFTADTKQRHAFLAHDRER 320



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 75/196 (38%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    +I   P   +     +R     V  + + +    ++
Sbjct: 755 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESV--IREAMLRELKR 812

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+    L       R +  H ++   E   ++RD    + +VL+  
Sbjct: 813 GGQVYFLHNEVETIENRKAMLEALVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCT 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +           +S+  
Sbjct: 873 TIIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDPQSLTK 928

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 929 ---QAQRRLEAIQQME 941


>gi|126726506|ref|ZP_01742347.1| transcription-repair coupling factor [Rhodobacterales bacterium
           HTCC2150]
 gi|126704369|gb|EBA03461.1| transcription-repair coupling factor [Rhodobacterales bacterium
           HTCC2150]
          Length = 1157

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 84/521 (16%), Positives = 165/521 (31%), Gaps = 67/521 (12%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
            L G         + + + A  +P + +A +    A++ +    F P   V  F      
Sbjct: 9   TLSGAPEGFDAELLMRELGAQGKPVVFVARDDRRLAEMRAALAFFGPSTLVLDF------ 62

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL---LERNDCIVVSSVSCIYGIGSVE 288
                  P  D       S N  +   R +   +L   +     ++ +  +    +   +
Sbjct: 63  -------PAWDCVPYDRISPNPNVSSARMATLAALRTGISGPFILLTTLNAVTQRLPVRD 115

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
             +  + Q  +G  + ++EL   LV+  + +    +  G + + G  I+I+P        
Sbjct: 116 VVASAVFQATVGKRINEQELREFLVRMGFSQTPTVMEPGDYAIRGGIIDIYPPGATG-PV 174

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+ +FG+ ++ +  F P T +    +  + +   S  +   P +    +  + E      
Sbjct: 175 RLDLFGDVLDGLRRFDPATQRTTEKLTHLDLAPVSEVILDEPAITRFRQNYRLE------ 228

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
                G                E +      Q +E++  +   +       TL +Y+P D
Sbjct: 229 -FGAAGTD----------DPLYEAVSAGRKHQGVEHWLPFFHAKLE-----TLMDYLP-D 271

Query: 469 SLLFVDESHVTIPQISGMYRGDF-HRKATLAEYGFRL-----PSCMDNRPLRFEEWNCLR 522
           + L +D+              D    +        R+     P   D   L    ++   
Sbjct: 272 ATLMLDDQATAARIARWTVVQDQYETRQHALSQKTRMDSIYKPCPADLLYLDEAAFDAAI 331

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
               VVS  P      Q  G+ V       G    P     + +    +   I      G
Sbjct: 332 SGHRVVSLAPLP----QATGLGVMDAGGRLGRNFAPERQSESISLFNVLKQHIQSRQADG 387

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++   +    E L   L +  +          T+   +  RDL  G   V + +  L
Sbjct: 388 -AVVVASFSAGARERLQGLLADEGL--------TDTILINDY-RDLSEGARGVYLVVWAL 437

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +G      GL  I + D  G       LI++  R  R  N
Sbjct: 438 EQGFHAE--GLTVISEQDVLG-----DRLIRSTKRKKRAEN 471



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 9/176 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + E  I  T  VD    IR+  T+ +   + + +     +
Sbjct: 749 HVLTLTATPIPRTLQLSLSGVRELSIIGTPPVDRLA-IRTYVTEFDSVTLREALLREHYR 807

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ E+L +    V ++  H ++   E  + +     GK+DVL+  
Sbjct: 808 GGQSFYVVPRISDLPEIEEFLRDHVPEVSFITAHGQMAAGELDDRMNAFYDGKYDVLLAT 867

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            ++  GLDIP    + I  AD  G  +    L Q  GR  R+             K
Sbjct: 868 TIVESGLDIPTANTMIIHRADMFGLAQ----LYQIRGRVGRSKTRAYAYLTTRPRK 919


>gi|332530190|ref|ZP_08406138.1| transcription-repair coupling factor [Hylemonella gracilis ATCC
           19624]
 gi|332040382|gb|EGI76760.1| transcription-repair coupling factor [Hylemonella gracilis ATCC
           19624]
          Length = 1177

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 72/467 (15%), Positives = 162/467 (34%), Gaps = 57/467 (12%)

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
           +   R   V+  +     +L  E   F P      F  + +    +++ P  D   E+ +
Sbjct: 34  KEAGRLLAVVCADATDTQRLIDEIAFFAPTLRCAVFPDW-ETLPYDSFSPHQDLISERLA 92

Query: 250 SINEQIDRMRHSATRSLLERN--DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           ++  ++     S+T S+  ++  D +++ + + +Y +      +    + K+   +++  
Sbjct: 93  TL-WRLYNTGQSSTGSVKPQDAIDLVLMPATTALYRLAPPSFLAATTFEFKVKQKLDEAA 151

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           L S L    Y      +  G + V G  I++FP     V +RV +F N+++ I  F P +
Sbjct: 152 LRSQLTLAGYNHVTQVVSPGEYAVRGGLIDLFPMGSA-VPYRVDLFDNEVDSIRTFDPDS 210

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
            + +  V  +++     +     +              R +   +   LLE    + R+ 
Sbjct: 211 QRSLYPVPEVRLLPGREFPMDEGS--------------RALFRRRWRELLEGDPTKSRLY 256

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP---EDSLLFVDESHVTIPQIS 484
            D   +    +   IE Y          E   T+F+Y+    + S   V    +  P + 
Sbjct: 257 KD---MGNGVATAGIEYYLPLFF-----EQTATVFDYLSGGRQQSATLVLHGDI-EPALR 307

Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP---TTIVVSATPGSWELEQCQ 541
             +     R         R P   ++  L  E++  L        + +A  G    +  +
Sbjct: 308 RFWTDTQDRYRLAQGEPERPPMPPEHLFLNAEQFFTLANAHAQLALKAAGSGQEAPDFAE 367

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
              + ++    G  DP ++++                     R+LL   +    E L ++
Sbjct: 368 FDRLPEVTAARGTDDPLLKLKD-------------HLRNTQHRVLLLAESDGRRESLLDF 414

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           L   ++               + + + R  K  + +    L++G   
Sbjct: 415 LRASSVV----------PPAFDTLEEFRASKERLGIATAALQQGFAW 451



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 19/134 (14%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            QV  +++E+     +  R             L E L E  I V   H ++   +   ++
Sbjct: 833 GQVYFLHNEVETIENRRAR-------------LEELLPEARIGVA--HGQMPERQLEAVM 877

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RD    + ++L+   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +  
Sbjct: 878 RDFVAQRTNLLLCSTIIETGIDVPSANTIVISRADKFGLAQ----LHQLRGRVGRSHHQA 933

Query: 686 VILYADTITKSIQL 699
                    +S+  
Sbjct: 934 YAYLMVPDKESLTK 947


>gi|256157728|ref|ZP_05455646.1| transcription-repair coupling factor [Brucella ceti M490/95/1]
 gi|256253301|ref|ZP_05458837.1| transcription-repair coupling factor [Brucella ceti B1/94]
 gi|261220415|ref|ZP_05934696.1| transcription-repair coupling factor [Brucella ceti B1/94]
 gi|265996234|ref|ZP_06108791.1| transcription-repair coupling factor [Brucella ceti M490/95/1]
 gi|260918999|gb|EEX85652.1| transcription-repair coupling factor [Brucella ceti B1/94]
 gi|262550531|gb|EEZ06692.1| transcription-repair coupling factor [Brucella ceti M490/95/1]
          Length = 1170

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 82/541 (15%), Positives = 179/541 (33%), Gaps = 88/541 (16%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPNKI 204
           +   G +P AIA        + +  ++ GV    + F +A+++E +    P + +  +  
Sbjct: 4   FSKLGLKPGAIAN-------KGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQ 56

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
             A L          + V  FVS      P  ++P  D       S        R +A  
Sbjct: 57  RIADL----------DQVLGFVSPDL---PVLHLPAWDCLPYDRVSPGADAAARRLAALS 103

Query: 265 SLLERND-----CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
           +L           I+ ++ + +  +    +  + ++  + G+ ++  +L + L +  ++R
Sbjct: 104 ALCALKKAPHPAVILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFER 163

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
                  G + V G  ++++    E+   R+  FG+ +E I  F P + +     +   +
Sbjct: 164 VSTVRDIGEYAVRGGILDLYAPGAEE-PLRLDFFGDTLETIRAFDPASQRTTSTRKEFVL 222

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
              S        ++            R   +   G         QR     + +      
Sbjct: 223 QPMSEITLSSDMISRF----------RKNYVAMFGAP-------QRDDALYQAISEGRRF 265

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
             +E++              T+F++      + V   H+    ++  +            
Sbjct: 266 AGMEHWLPLFYDNLE-----TVFDH---AGPMPVVFDHLVHEALTERHTMVVDHYEARLR 317

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD--- 556
                 +  D  P +      ++P  + +  TPG  E E  +   +   + P G  +   
Sbjct: 318 QAEGKEAGSDAVPYKP-----VKPEMLYL--TPGQVE-EAAEAAGLRIDLTPFGAPEVSG 369

Query: 557 ------------PPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
                          E R+A      E V   I      G ++L+   T+   + L + L
Sbjct: 370 RTIIHADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEGSLDRLCQVL 429

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            E  +       +++T++R+  ++ L   K    V   +L          LV + + D  
Sbjct: 430 DEHGLE------KIETVDRLSTVKALSRDK----VTAAVLAVESGFDAGDLVVVAEQDIL 479

Query: 663 G 663
           G
Sbjct: 480 G 480



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 775  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPLVIRETLLRERYR 833

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       D+ E+L E    ++V   H ++      +I+     G++DVL+  
Sbjct: 834  GGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 893

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 894  TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 946

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 947  -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 987

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 988  QSGHIKEVGFELYQQMLEEA 1007


>gi|225619936|ref|YP_002721193.1| transcription-repair coupling factor [Brachyspira hyodysenteriae
           WA1]
 gi|225214755|gb|ACN83489.1| transcription-repair coupling factor [Brachyspira hyodysenteriae
           WA1]
          Length = 1247

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 81/522 (15%), Positives = 177/522 (33%), Gaps = 88/522 (16%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G+ G   +   + +    +   +++  N+                +A+    S   Y 
Sbjct: 32  LTGLKGGSDSLFFSSLFNKNE-SILIIKENES---------------DAMLLSQSLNFYN 75

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYS 291
            P  Y P  DT    + S    I + R +    L+ +  CI++++V+ +   + + +   
Sbjct: 76  IPNYYFPDYDTVPFTKMSPVSDIAQDRINILYKLINKEKCIIITTVNAVTRKLPNRDDLK 135

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           ++ + L +GD ++   L  +L    Y  +     +GT  V G  +++F     +   R+ 
Sbjct: 136 KLPIHLNVGDKLDLDNLRLTLYDLGYVIEREVAEKGTASVRGSIVDVFSVEYNN-PIRIE 194

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY--IKEELKMRLIE 409
           +F ++IE I  F    G+  ++VE I IY     +     ++  +    I++ELK  +I+
Sbjct: 195 LFDDEIESIRLFNIEDGRSFKSVENIIIYPVRETIYSDSAVSEFINNNEIEDELKDNIIK 254

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS 469
            +                               EN               T+F+Y  +  
Sbjct: 255 RK--------------------------YFAGSENLLPIFYKDLE-----TIFDYF-DYG 282

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE--WNCLRPTTIV 527
            +F D++     +   +       K    +         D   L  +   +  +    I 
Sbjct: 283 YIFTDDALKLKNKFITIIDTI---KENFNDIDNIFNIIEDIYKLYIDSNYFAEIVKKAIN 339

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR--- 584
           +S  P   +++  +    E I   + L D    ++  R + + +         Q LR   
Sbjct: 340 IS--PFITDIDIYKFHFEEGISFKSRLTDFLDYVKEYREK-DYLIILSTGHNDQALRFYK 396

Query: 585 -------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV----------------KTLER 621
                   ++T       ED+ +   E N   + +++++                 T ++
Sbjct: 397 IMQDLSPTIITENDIEDTEDIKD--KEENSDNKEINNDIKENDDNNEDNKEIILEDTNKK 454

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            EI +D    + +  +       G    +   + I D +  G
Sbjct: 455 EEIKKDYSKNENNFYIITAQSSSGFIKDDIKTIFIADWEVFG 496



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI    II    L   PV+        + V + I    ++  
Sbjct: 793 VLTLSATPIPRTLNMALTGIRDISIIETPPLNRIPVKTFVTEFSEDAVVNAIERELKREG 852

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     + +   + R    H  +   +  +I+ D    K+D+LV   +
Sbjct: 853 QVFYLYNRIDTIESFALMIKKLCPKARICVAHGRMTGHQLEKIMGDFINHKYDILVSTTI 912

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I +A+K G       L Q  GR  R+                 LA+
Sbjct: 913 IENGIDIPNANTILIDNANKLGLSE----LYQLRGRVGRSDREAYAYMFYP----SDLAL 964

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + +  +    
Sbjct: 965 TEVAYKRLEAISEHTDLG 982


>gi|269139412|ref|YP_003296113.1| transcription-repair coupling factor (superfamily II helicase)
           [Edwardsiella tarda EIB202]
 gi|267985073|gb|ACY84902.1| transcription-repair coupling factor (superfamily II helicase)
           [Edwardsiella tarda EIB202]
 gi|304559308|gb|ADM41972.1| Transcription-repair coupling factor [Edwardsiella tarda FL6-60]
          Length = 1178

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 106/290 (36%), Gaps = 37/290 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           ++GS      A++ E    P +++ P+   A +L  E    F    V     +       
Sbjct: 53  LSGSACALECAEIAERHAGPVMLVVPDMQTALRLRDEI-PQFSRQWVTTLADW------- 104

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ-MI 294
                 +T      S ++ I   R S    L      I++  ++ +       S+     
Sbjct: 105 ------ETLPYDSFSPHQDIISARLSCLYHLPGMERGIIILPINTLMQRVCPHSFLHGHA 158

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K G  + +  L + L +  Y+  D  +  G F   G  +++FP   ++  +R+  F 
Sbjct: 159 LVMKKGQRLSRDVLRTQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSDE-PYRIDFFD 217

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ +  F   + + +  VE I +     +    PT  TA++  + + +          
Sbjct: 218 DEIDSLRLFDVDSQRTLNEVERIDLLPAHEF----PTDQTAIELFRSQWREHFEVRRDAE 273

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            +   Q++ +RI               IE +          +P PTLF Y
Sbjct: 274 HI--YQQVSKRI-----------WPAGIEYWQPLF----FNQPLPTLFSY 306



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 70/180 (38%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 782 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRMAVKTFVREYDSLV--VREAILRETLR 839

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ A+ L   + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 840 GGQVYYLYNDVDTIQKAADRLATLVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 897

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 898 CTTIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSYHQAYAYLLTPPPKAM 953


>gi|93006488|ref|YP_580925.1| transcription-repair coupling factor [Psychrobacter cryohalolentis
           K5]
 gi|92394166|gb|ABE75441.1| transcription-repair coupling factor [Psychrobacter cryohalolentis
           K5]
          Length = 1243

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 60/342 (17%), Positives = 120/342 (35%), Gaps = 43/342 (12%)

Query: 176 VTGSGKTFTMAKVIEA-----MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           V G+  +  +A +++A     ++R  +V+  ++    Q+ +E         V        
Sbjct: 31  VHGAVSSLWLASLVQAPIWNVVERLKVVVTRDQNQLNQIETELAFCGVDAHV-------- 82

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                   P  +T    E S ++ I   R +    +   +  +++S  + ++ +      
Sbjct: 83  -------FPDWETLTYDELSPHQDIVSERINLLTDMPT-SGVLLISVQALMHRVAPPSWL 134

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
                 L +GD  +     + L K  Y+  D     G F V G  I+IF +  +    R+
Sbjct: 135 IGQHFDLSVGDQFDINTQRTLLAKAGYRAVDNVFEPGEFAVRGSIIDIF-AMGQPFPLRL 193

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK--YIKEELKMRLI 408
            +F ++IE I  F P T + +   +   + + +     + +L+   K   I + +K +  
Sbjct: 194 DLFDDEIETIRFFNPQTQRTLTVDDLKVMMSGNDSSMGKESLSLLHKLPDISKPIK-QFQ 252

Query: 409 ELEKEGRLLEAQRLEQRITY-------------DLEMLETTGSCQSIENYSRYLTGRNPG 455
            L  +   L+  R   R  +               + +    +   +E Y          
Sbjct: 253 ILPAKEFPLDEGRETFRTNFAALFPNSNSRKFELHKDVMAGIASSGLEYYQPLFFDLKDW 312

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIP-----QISGMYRGDFH 492
               +LF Y+P D+L   DE           QI   Y    H
Sbjct: 313 TVESSLFAYLPSDTLFITDELINEKQADYWSQIQRRYEERRH 354



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 11/193 (5%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            ++ ++ATP    L      + +  I  T              + + +  + I     +G 
Sbjct: 841  SMSMTATPIPRTLNMALSGMRDMSIIATPPARRLAIKTFVMQKTDALMKEAILRELLRGG 900

Query: 584  RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
            ++ L        E + E + E     R    H +++  +  ++++     KF+VL+   +
Sbjct: 901  QVYLLHNDVASIERMAETIRELVPEARVGVAHGQMQERQLEQVMQQYYHKKFNVLICSTI 960

Query: 642  LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            +  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K ++   
Sbjct: 961  IETGIDVPNANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYCYLLVPSIKGLKG-- 1014

Query: 702  DETTRRREKQLEH 714
                +RR   +E 
Sbjct: 1015 --DAKRRLHAIER 1025


>gi|332678337|gb|AEE87466.1| Transcription-repair coupling factor [Francisella cf. novicida Fx1]
          Length = 1141

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 72/447 (16%), Positives = 154/447 (34%), Gaps = 56/447 (12%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE--YFV 226
              ++    GS  +    + ++   +  +++  +   A ++Y E K    +N+     F 
Sbjct: 9   NDTVVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNNSKLDILFF 68

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
              +    + +    D      S   E + +M H    +L      I+ S  + +  I  
Sbjct: 69  PNLEILPYDRFSASIDII----SRRQEILYKMTHQPQNTL------IITSISNTLRKIAP 118

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                +    LK GD+++  +    L +  Y   +    +G F + G  I+I+P     V
Sbjct: 119 ASFIQENSFILKTGDNLDITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPI-GSKV 177

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
           A+R+ +F N+I+ I E    + +    +++I I  +   V        A           
Sbjct: 178 AFRIDLFDNEIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFA----------- 226

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
              L+K  +L   + L   I      ++       IE Y          +   +L++Y+P
Sbjct: 227 ---LDKLNKLCGDKALNSTIA---TYIQNNEYFSGIEFYLPLFY-----DKLSSLYDYLP 275

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
             + + + ++      I         R          L    D   L F          I
Sbjct: 276 PSTNIHLVDN--ITNSIEAFSDEVKFRYNE-------LKHDSDRPILPF--------QEI 318

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPP--VEIRSARTQVEDVYDEINLAAQQGL- 583
             S        +Q + I   Q  +    +     +E  SA  ++ + + ++     +   
Sbjct: 319 FYSQQEIQDIYQQYKNIKWFQQPKSKSKILKVDHLEKISANYKLANPFKDLQQFIDKSNF 378

Query: 584 -RILLTVLTKRMAEDLTEYLYERNIRV 609
            +++ +  +   AE L E+L + N+ +
Sbjct: 379 DKVIFSTDSNGRAELLLEHLNKLNLNI 405



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 91/265 (34%), Gaps = 26/265 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +  I    P   +     ++     +  + + ++    +
Sbjct: 748 ILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDNNI--IREAVSRETIR 805

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +I          ++  E L E      I +   H ++   E  +++ D +  K+ +L+
Sbjct: 806 GGQIFYLYNKVETIQKKKEILQELFPRLRIAIA--HGQMSEKEIQKVMFDFKHNKYHILL 863

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I DA+  G  +    L Q  GR  R+ +            SI
Sbjct: 864 CTTIIETGIDIPNANTLIIEDANNLGLAQ----LHQLRGRVGRSHHQAYAYMLIPNEASI 919

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
               D   R        +        +   +I    + +  E +     +ID   L+L  
Sbjct: 920 TK--DALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSG----NIDGIGLNLYM 973

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEE 782
                 + +L      A   LN EE
Sbjct: 974 DLLDKTIANL-----QAGKELNIEE 993



 Score = 44.3 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTFT---MAKVIE 190
            ++   F     Y  + DQ +AI  + K  I ++   +L+ G  G GKT      A +  
Sbjct: 584 EEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLAT 643

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
             Q+   ++ P  ILA Q Y+ FK+ F + AV
Sbjct: 644 QNQKQVAILVPTTILAQQHYNSFKDRFTNTAV 675


>gi|326387814|ref|ZP_08209420.1| transcription-repair coupling factor [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207860|gb|EGD58671.1| transcription-repair coupling factor [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 1161

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 66/353 (18%), Positives = 122/353 (34%), Gaps = 37/353 (10%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           +  I S      L  V    +   +A +  A    A+ +A + +    +      F P  
Sbjct: 4   ISRILSATAPLTLSSVARGAQPLVLADIARAAPGRAVFVAADDVAMRAIVDTAAFFAPEL 63

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
            V  F ++ D    +   P     I           +       S  E    +V +  + 
Sbjct: 64  DVVEFPAW-DCLPFDRASPA--LAISARRLAALARLQ-------SKREGPQLVVTTINAV 113

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           +  + +     +    LK G  + ++ L++ L +Q Y R D  +  G + V G   +IFP
Sbjct: 114 LQRVLTPFRIRESTRVLKPGIEIGRETLIALLQRQGYARTDTVVDTGEYAVRGGVFDIFP 173

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
           S L D   R+  FG+++E +  F P T + ++ VE+  +   S  +    ++        
Sbjct: 174 SGL-DHGLRLDFFGDELETLRLFDPSTQRSVQPVESHLLLPASEALLDETSIKRF----- 227

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
                R    E  G       L Q ++              +E++      R       T
Sbjct: 228 -----RSRYREIFGANATGDPLYQAVS-------EGRRLAGMEHWLPLFEDRM-----VT 270

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
           LF+++ E  ++ +D S     +       D+      A+   R P     RPL
Sbjct: 271 LFDHLGEGDVVMLDTSAAKAAESRLADIADYR--QARADAAQRQPGSY--RPL 319



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 13/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + ++ATP    L+     + E     T  VD    +R+     +DV   D +    Q+
Sbjct: 757 HVLTLTATPIPRTLQMAMSGLRELSTIQTPPVDRLA-VRTYVMPWDDVVIRDALLREHQR 815

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +  + V       ++ E+L      +R +  H ++ + +  + +      K++VL+  
Sbjct: 816 GGQSFIVVPRIADMPEMEEWLRLNVPEIRAVSAHGQMSSSDVEDRMSAFYDKKYEVLLST 875

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + +  AD+ G  +    L Q  GR  R                   
Sbjct: 876 TIIESGIDIPSANTIILHRADRFGLAQ----LYQLRGRVGRGKLRAYAYLTYPEN----Q 927

Query: 700 AIDETTRRREK 710
           A+ E   +R K
Sbjct: 928 ALSEIAEKRLK 938


>gi|323526062|ref|YP_004228215.1| transcription-repair coupling factor [Burkholderia sp. CCGE1001]
 gi|323383064|gb|ADX55155.1| transcription-repair coupling factor [Burkholderia sp. CCGE1001]
          Length = 1160

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 73/505 (14%), Positives = 157/505 (31%), Gaps = 74/505 (14%)

Query: 175 GVTGSGKTFTMAK--VIEAMQRPAIVMAP-NKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           G  GS     +A+  +    + P + +   + + A +L  E   F P   V         
Sbjct: 27  GTHGSSDALLIARYHLAYREKVPLLAVVCESAVDAQRLSQEIGFFAPEARVRL------- 79

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESY 290
                 +P  +T      S ++ +   R +    L E     ++V + + +Y +      
Sbjct: 80  ------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFL 133

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +        G+ +++ +L + L    Y+     +  G + V G  ++++P     + +R+
Sbjct: 134 AAYTFSFSQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLLDLYPM-GSPLPYRI 192

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +F + ++ I  F P T + +  V+ +++     +                    R    
Sbjct: 193 DLFDDQVDSIRAFDPDTQRSLYPVKDVRLLPGREFPFDE--------------AARTAFR 238

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
            +     E       I  D   +        IE Y          +   TLF Y+P  + 
Sbjct: 239 SRWRETFEGDPSRASIYKD---IGNGVPSAGIEYYLPLFF-----DETATLFHYLPPGAQ 290

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
           L           +    R   +       +   L    D   L         P  + ++ 
Sbjct: 291 LAF------AGDLDAAIRRFNNDTKQRYNF---LSHDRDRPILE--------PQRLFLT- 332

Query: 531 TPGSWELEQCQGIIVEQIIRPTGL---VDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
               + L +    +V  +    G    +      R A   V  +   ++       R+L 
Sbjct: 333 DEDFFTLAKPFARLVLPVNAGGGWSTPLPNLAIDRHADDPVSALRAYLDTTP---NRVLF 389

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
              +    E L + L + +++              +  +D   G     +G+  L  G  
Sbjct: 390 AAESAGRRETLLQLLADNHLK----------PASSDSFQDWLTGDARFSLGVAPLANGFA 439

Query: 648 IPECGLVAILDADKEGFLRSKTSLI 672
           +P  G+  I + +  G L  +    
Sbjct: 440 VPADGIAIITETELYGPLARRAGRR 464



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 24/150 (16%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            QV  +++E+     +          ++M E L     E  I V   H ++   E   ++
Sbjct: 815 GQVYFLHNEVETIENR----------RQMLEALV---PEARIAVA--HGQMHERELERVM 859

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RD    + +VL+   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +  
Sbjct: 860 RDFVAQRANVLLCTTIIETGIDVPSANTILIHRADKFGLAQ----LHQLRGRVGRSHHQ- 914

Query: 686 VILYADTITKSIQLAIDETTRRRE--KQLE 713
              Y+  +    Q    +  RR E  +Q+E
Sbjct: 915 --AYSYLLVHDPQGLTKQAQRRLEAIQQME 942


>gi|307295470|ref|ZP_07575306.1| transcription-repair coupling factor [Sphingobium chlorophenolicum
           L-1]
 gi|306878509|gb|EFN09729.1| transcription-repair coupling factor [Sphingobium chlorophenolicum
           L-1]
          Length = 1157

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 86/519 (16%), Positives = 167/519 (32%), Gaps = 94/519 (18%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P+G QP  +A + +              +GSG+   +A              P++ L   
Sbjct: 20  PAGFQPWLLADIARAAAG----------SGSGRALFVA--------------PDEQLMRA 55

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           +          +   YF    +       +P  D      +S + +    R +   +L  
Sbjct: 56  VA---------DTAHYFAPEIEI----VEIPAWDCLPYDRASPSLRSASARLAGLYALQS 102

Query: 269 RNDCI--VVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           +      V+++++ +     +     Q++ +L   + +    L   L    Y R D    
Sbjct: 103 KPRGPQLVLTTLNALTQRTLTPFRVRQLVAKLAPKERIAISRLAEMLQANGYVRTDTVHD 162

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           RG F + G  +++FP   E+   R+  FG++IE +  F P   +   +VE   +   S  
Sbjct: 163 RGEFAIRGGIVDLFPG-GEEQPLRLDFFGDEIETVRRFDPADQRTSGSVEGFTLLPASEA 221

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
           +    T+             R    E  G       L Q ++              +E++
Sbjct: 222 LLDEETIKRF----------RGRYRETFGATATGDPLYQAVS-------DGRRLAGMEHW 264

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505
                 R     P +  E++ +D+++ +D  H         +       A         P
Sbjct: 265 LPLFEERLV---PMS--EHLGDDTIIVLD--HGVAGAAEARFEAIRDYHANRVAAKSSDP 317

Query: 506 SCMDNRPLRFE-------EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
                RPL          EW+ L     + + TP   E E    I           VD P
Sbjct: 318 GAY--RPLEPAALYLDSREWDGLVREWPMHATTP-FHEPESASVIDF--------AVDGP 366

Query: 559 VEIRSARTQVEDVYD----EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
            +    R Q  +VY+     I    +   ++++   +    E L+  L +  +       
Sbjct: 367 RDFAPERAQNANVYEAVGKHIASLQRAKKKVVIASYSGGARERLSGLLADHGLNR----- 421

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            +   +  +    +  G   VL  +  L  G   P+  +
Sbjct: 422 -IAAADSWQEALGIAAGGSTVL-TVLPLDHGFAAPDVAV 458



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 15/192 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
             + ++ATP    L+     + E  +  T  VD       I      V  + + +     
Sbjct: 761 HVLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLAVRTYIMPWDGVV--IREALLREHY 818

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G +    V       ++ E+L      V+ +  H ++   E  E +      ++DVL+ 
Sbjct: 819 RGGQSFFVVPRIADLTEVEEFLRTEVPEVKPIVAHGQMAASEVEERMSAFYDKRYDVLLS 878

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  GLDIP    + I  AD+ G  +    L Q  GR  R+       +    T    
Sbjct: 879 TTIVESGLDIPSANTLIIHRADRFGLAQ----LYQLRGRVGRSKTRAYAYF----TTPAN 930

Query: 699 LAIDETTRRREK 710
             I ET  +R K
Sbjct: 931 RVITETAEKRLK 942


>gi|225351843|ref|ZP_03742866.1| hypothetical protein BIFPSEUDO_03444 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157090|gb|EEG70429.1| hypothetical protein BIFPSEUDO_03444 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 1182

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 88/248 (35%), Gaps = 31/248 (12%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            +  G+    +  L  G  G+              RP +++  +   A ++    ++++ 
Sbjct: 45  SITVGVPEGLRPALAAGAAGT--------------RPVVLVVASGREAEEMVEAIRSWYS 90

Query: 219 HNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
            +  +      ++    E   PR DT   + +       R+ H    S L     I+V  
Sbjct: 91  GDPNDVAQLEAWETLPHERLSPRADTVASRMAVF----RRLMHPQEGSKLFGPIRILVMP 146

Query: 278 VSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           V  +      G+G VE           G+ +   E    LV+  Y R D+ + RG F V 
Sbjct: 147 VRSLIQPVVAGLGDVEPLV-----FSQGEELALDEASHRLVENAYTRVDLVMDRGEFAVR 201

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPT 391
           G  I++FP  L     R+  FG++I+ I EF+    +    ++  +              
Sbjct: 202 GGIIDVFPPTL-PHPVRIEFFGDEIDTIKEFHASDQRTYGSDIPMVWATPCRELQLTEKV 260

Query: 392 LNTAMKYI 399
              A   I
Sbjct: 261 RVRAKSLI 268



 Score = 40.8 bits (94), Expect = 0.98,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 61/177 (34%), Gaps = 9/177 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 783 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAVRRELLRG 841

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +    +   ++E          H ++   +   +IRD      DVLV   
Sbjct: 842 GQVFYVHNRVQDIASVAAKIHELVPESHVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTT 901

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    TK +
Sbjct: 902 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPTKPM 954


>gi|315223854|ref|ZP_07865702.1| transcription-repair coupling factor [Capnocytophaga ochracea
           F0287]
 gi|314946184|gb|EFS98185.1| transcription-repair coupling factor [Capnocytophaga ochracea
           F0287]
          Length = 1109

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 96/244 (39%), Gaps = 14/244 (5%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             LL  I +     +  G+ G+  +  +A V    +RP +V+ P+K  +A L ++ +   
Sbjct: 15  KSLLTEIKA-HHNTVANGLAGASLSLLIANVYTNTKRPLLVLLPDKEESAYLLNDLETLI 73

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
               + +  SY   YQ E      DT         E ++R+ +S       +   +V   
Sbjct: 74  GEQVLFFPDSYRRPYQIE------DTDNANVLLRAEVLNRLSNS------GQPLIVVSYP 121

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            +    + + +   Q  +++  GD +  + L   L    + R D     G F V G  ++
Sbjct: 122 EALFEKVITRKQLEQSTLKISKGDQLTIELLNEVLFSYNFNRTDFVTEPGEFSVRGGIVD 181

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           +F S   +  +R+  FGN++E I  F   T      +  I I  N           + ++
Sbjct: 182 VF-SFSNNEPYRIEFFGNEVESIRTFDVETQLSTTQLSKITIIPNVENKEGNEVRQSFLE 240

Query: 398 YIKE 401
           YI E
Sbjct: 241 YISE 244



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 19/196 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L+       +  +  T   +         +QV     E + D I    
Sbjct: 702 VLTLTATPIPRTLQFSLMAARDLSVINTPPPNR----YPIDSQVVPFSEEIIRDGIRYEI 757

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
           Q+G ++          +++   +       R    H ++   +  E +     G +DVLV
Sbjct: 758 QRGGQVFFMHNRVENIQEVAGMIQRLLPDARIAIGHGQMDGKKLEETMLAFMDGAYDVLV 817

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLD+P    + I +A   G     + L Q  GR  R+       +      ++
Sbjct: 818 ATTIIENGLDVPNANTIFINNAHNFGL----SDLHQMRGRVGRSNKKAFCFFITPPLVAM 873

Query: 698 QLAIDETTRRREKQLE 713
                +  R+R + + 
Sbjct: 874 ----SDDARKRIEAIA 885


>gi|92117582|ref|YP_577311.1| transcription-repair coupling factor [Nitrobacter hamburgensis X14]
 gi|91800476|gb|ABE62851.1| transcription-repair coupling factor [Nitrobacter hamburgensis X14]
          Length = 1173

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 66/388 (17%), Positives = 124/388 (31%), Gaps = 39/388 (10%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           AA+    + +    +   L  V    +   ++ +  A++  A   A    LA       +
Sbjct: 2   AAVRSPAESLSPG-RPLTLANVAEGAEGLVVSDLARAIKAKAGRQASAVSLAVVCRDGPR 60

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-----ER 269
                 A+E+F       Q     P  D       S +  I   R +    L      E 
Sbjct: 61  MQQLARALEFFAPDISVMQ----FPAWDCQPYDRVSPHGGILAQRLTTLARLSRLTGSEA 116

Query: 270 NDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
              ++ +  + +  + +    +   + +  G  V    + + L    Y R       G +
Sbjct: 117 PLIVLTTVNAILQRVPARAIVASQALSVAPGHVVPMDSIAAWLEHNGYNRSSTVREPGEY 176

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
            V G  +++FPS L D   R   FG+ +E I  F P T + + +V ++ +   S +    
Sbjct: 177 AVRGGILDLFPSSL-DQPVRFDFFGDSLESIRSFDPETQRTLLDVRSLDLVPISEFQFVT 235

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
            T+             R+  +   G       L        E +        +E++    
Sbjct: 236 ETIRRF----------RMGYVAAFGAPGRDDLL-------YEAVSEGRRHPGMEHWLPLF 278

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFV-----DESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
             R       TLF+Y+ + + + +     D ++    QI   Y                 
Sbjct: 279 HERM-----DTLFDYL-DGAPIAIEPQGEDAANERFKQIVDYYEARREALEHPGGGAVYK 332

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           P  +D   L  +EW        +V  TP
Sbjct: 333 PLPVDRLYLTPDEWAKRVDEAALVRLTP 360



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 75/191 (39%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + +  I  +  VD    +R+     + +   + +     +
Sbjct: 773 HVLTLSATPIPRTLQLALTGVRDLSIIASPPVDRLA-VRTFVAPHDPLMIREALLRERYR 831

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ ++L +    ++V   H ++      +I+     GK+DVL+  
Sbjct: 832 GGQAFYVVPRIDDLAEVKDFLDKHVPEMKVAVAHGQMAPTVIEDIMSAFYDGKYDVLLST 891

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK+  YA     S   
Sbjct: 892 TIVESGLDIPSANTLIVHRADMFGLAQ----LYQLRGRVGR---SKLRAYALFTLPSTHK 944

Query: 700 AIDETTRRREK 710
              +  RR + 
Sbjct: 945 ITAQAERRLKV 955



 Score = 38.5 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 49/156 (31%), Gaps = 5/156 (3%)

Query: 72  TASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQS-DNPLLKNGKIWTPHRSWS 130
                E  S+     +  +   +           L   I+     L+K       H +  
Sbjct: 546 PVENIELLSRYGSDHANVELDRLGGSGWQARKAKLKNRIREIAGELIKIAAARHLHEAPK 605

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MA 186
           +   S     F  +  Y  + DQ  AI   LK + S     +L+ G  G GKT      A
Sbjct: 606 MPVQSGLYDEFCARFPYEETEDQLGAIHASLKDLESGRPMDRLICGDVGFGKTEVALRAA 665

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
             +    +   V+ P  +LA Q    F   F    V
Sbjct: 666 FAVALDGKQVAVVVPTTLLARQHARTFTERFRGFPV 701


>gi|296125668|ref|YP_003632920.1| transcription-repair coupling factor [Brachyspira murdochii DSM
           12563]
 gi|296017484|gb|ADG70721.1| transcription-repair coupling factor [Brachyspira murdochii DSM
           12563]
          Length = 1244

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 73/468 (15%), Positives = 162/468 (34%), Gaps = 68/468 (14%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           E ++ + G+ G       A + +      +++  N+  A  L                 S
Sbjct: 27  ENIKSITGLKGGSDALLFASLFKKNS--ILIIKENESEAMLLS---------------QS 69

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGS 286
              Y  P  Y P  DT    + S    I + R +    L+ +  CI++++++ I   I +
Sbjct: 70  LNFYNIPNYYFPDYDTVPFTKMSPITDIAQERINILYRLINKEHCIIITTINAITRKIAN 129

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            E   ++ ++L IGD ++   L   L    Y  +     +GT  V G  ++IF    ++ 
Sbjct: 130 REDLKKLYIELHIGDKLDLDNLRLKLYDLGYVIEREVAEKGTASVRGSIVDIFSVEYDN- 188

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ MF ++IE I  F    G+  ++++ I IY     V     +   +          
Sbjct: 189 PIRIEMFDDEIESIRLFNIEDGRSFKSIDNIIIYPVREVVYSDEDVEVFLN--------- 239

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
               +          + +R                 EN               T+F+Y  
Sbjct: 240 ----KNSTEKEIKDNIIKR-----------KYFAGSENLLPMFYSNLE-----TIFDYF- 278

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
           +   +F+D++     ++  +            +  F L   ++   +  + +N +   +I
Sbjct: 279 DYGYVFIDDALKLKTKLITILDTIRENFND-IDNMFSLIGDIEKLYINNDYFNEIVKKSI 337

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
            +S  P   +++  +   +E +              S ++++ D  D +    ++    L
Sbjct: 338 NIS--PFITDIDIYKFNFLEGV--------------SFKSRLTDFLDYVKEYRKKDY--L 379

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           + + T    + L  Y   +++    +  E +   +     D    + D
Sbjct: 380 IILSTGHYDQALRFYKIMQDLSPIIIAPEEEKNTKENFKEDFNKKEND 427



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI    II    L   PV+        E V + I    ++  
Sbjct: 796 VLTLSATPIPRTLNMALTGIRDISIIETPPLNRIPVKTFVTEFSEEAVVNAIERELKRDG 855

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E     + +   + R    H  +   +  +I+ D    K+D+LV   +
Sbjct: 856 QVFYLYNRIDTIESFALMIKKLCPKARICVAHGRMTGHQLEKIMEDFINHKYDILVSTTI 915

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I +A++ G       L Q  GR  R+                 LA+
Sbjct: 916 IENGIDIPNANTILIDNANRLGLSE----LYQLRGRVGRSDREAYAYMFYP----SDLAL 967

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + +  +    
Sbjct: 968 TEVAYKRLEAISEHTDLG 985


>gi|259908777|ref|YP_002649133.1| transcription-repair coupling factor [Erwinia pyrifoliae Ep1/96]
 gi|224964399|emb|CAX55908.1| Transcription-repair-coupling factor [Erwinia pyrifoliae Ep1/96]
 gi|283478753|emb|CAY74669.1| Transcription-repair-coupling factor [Erwinia pyrifoliae DSM 12163]
          Length = 1148

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 57/312 (18%), Positives = 118/312 (37%), Gaps = 38/312 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + SR   Q  LG + G+      A++ +    P +++A +   A +L  E K F      
Sbjct: 9   LPSRAGDQRQLGQLIGAACAVECAEIADRHHGPVLLIAHDMQNALRLQDEIKQFTD---- 64

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                     QP   +   +T      S +++I   R S    L      I++  V+ + 
Sbjct: 65  ----------QPVMALADWETLPFDGFSPHQEIISSRLSTLYQLPTLASGILILPVNTLM 114

Query: 283 GIGSVESYSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                 ++     + ++ G  + + +L S L +  Y+  D  +  G F   G  ++++P 
Sbjct: 115 QRVCPHNFLHGHALVMQKGQKLSRDKLRSQLEQAGYRSVDQVMEHGEFATRGALLDLYPM 174

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E   +R+  F ++I+ +  F   + +    V  I +     +    PT   A++  + 
Sbjct: 175 GSE-RPYRIDFFDDEIDSLRLFDVDSQRTQEEVAAINLLPAHEF----PTDENAIELFRS 229

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +             EA+ + Q+++              IE +        P +P   L
Sbjct: 230 QWRE------HFDVRREAEHIYQQVSK-------GTLPAGIEYWQPLF-FEQPLQP---L 272

Query: 462 FEYIPEDSLLFV 473
           F Y+P ++LL +
Sbjct: 273 FSYLPVNTLLVM 284



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 7/176 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+          V + I     +G 
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDEMAVREAILREVLRGG 810

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E  T+ L E     R    H +++  E   ++ D    +F+VLV   +
Sbjct: 811 QVYYLYNDVENIEKATKRLTELVPEARVALGHGQMRERELERVMNDFHHQRFNVLVCTTI 870

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  G+DIP    + I  AD+ G  +    L Q  GR  R+ +           K++
Sbjct: 871 IETGIDIPTANTIIIERADRFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|306841773|ref|ZP_07474459.1| transcription-repair coupling factor [Brucella sp. BO2]
 gi|306288178|gb|EFM59565.1| transcription-repair coupling factor [Brucella sp. BO2]
          Length = 1170

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 77/537 (14%), Positives = 174/537 (32%), Gaps = 80/537 (14%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPNKI 204
           +   G +P+AIA        + +  ++ GV    + F +A+++E +    P + +  +  
Sbjct: 4   FSKLGLKPSAIAN-------KGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQ 56

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYY-DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
             A L        P   V +  ++    Y   +             S    + +  H A 
Sbjct: 57  RIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCALKKAPHPA- 115

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                    I+ ++ + +  +    +  + ++  + G+ ++  +L + L +  ++R    
Sbjct: 116 --------VILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTV 167

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G + V G  ++++    E+   R+  FG+ +E I  F P + +     +   +   S
Sbjct: 168 RDIGEYAVRGGILDLYAPGAEE-PLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMS 226

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
                   ++            R   +   G         QR     + +        +E
Sbjct: 227 EITLSSDMISRF----------RKNYVAMFGAP-------QRDDALYQAISEGRRFAGME 269

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           ++              T+F+       + V   H+    ++  +                
Sbjct: 270 HWLPLFYDNLE-----TVFD---RAGPMPVVFDHLVHEALTERHTMVVDHYEARLRQAEG 321

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD------- 556
             +  D  P +      ++P  + +  TPG  E E  +   +   + P G  +       
Sbjct: 322 KEAGSDAVPYKP-----VKPEMLYL--TPGQVE-EAAEAAGLRIDLTPFGAPEVSGRTII 373

Query: 557 --------PPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                      E R+A      E V   I      G ++L+   T    + L + L E  
Sbjct: 374 HADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTDGSLDRLCQVLDEHG 433

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +       +++T++R+  ++ L   K    V   +L          LV + + D  G
Sbjct: 434 LE------KIETVDRLSTVKALSRDK----VTAAVLAVESGFDAGDLVVVAEQDILG 480



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 775  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPLVIRETLLRERYR 833

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       D+ E+L E    ++V   H ++      +I+     G++DVL+  
Sbjct: 834  GGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 893

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 894  TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 946

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 947  -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 987

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 988  QSGHIKEVGFELYQQMLEEA 1007


>gi|256820721|ref|YP_003142000.1| transcription-repair coupling factor [Capnocytophaga ochracea DSM
           7271]
 gi|256582304|gb|ACU93439.1| transcription-repair coupling factor [Capnocytophaga ochracea DSM
           7271]
          Length = 1109

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 96/244 (39%), Gaps = 14/244 (5%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             LL  I +     +  G+ G+  +  +A V    +RP +++ P+K  +A L ++ +   
Sbjct: 15  KSLLTEIKA-HHNTVANGLAGASLSLLIANVYTNTKRPLLILLPDKEESAYLLNDLETLV 73

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
               + +  SY   YQ E      DT         E ++R+ +S       +   +V   
Sbjct: 74  GEQVLFFPDSYRRPYQIE------DTDNANVLLRAEVLNRLSNS------GQPLIVVSYP 121

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            +    + + +   Q  +++  GD +  + L   L    + R D     G F V G  ++
Sbjct: 122 EALFEKVITRKQLEQNTLKISKGDQLTIELLNEVLFSYNFNRTDFVTEPGEFSVRGGIVD 181

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           +F S   +  +R+  FGN++E I  F   T      +  I I  N           + ++
Sbjct: 182 VF-SFSNNEPYRIEFFGNEVESIRTFDVETQLSTTQLSKITIIPNVENKEGNEVRQSFLE 240

Query: 398 YIKE 401
           YI E
Sbjct: 241 YISE 244



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 63/180 (35%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L+       +  +  T   +         +QV     E + D I    
Sbjct: 702 VLTLTATPIPRTLQFSLMAARDLSVINTPPPNR----YPIDSQVVPFSEEIIRDGIRYEI 757

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
           Q+G ++          +++   +       R    H ++   +  E +     G +DVLV
Sbjct: 758 QRGGQVFFMHNRVENIQEVAGMIQRLLPDARVAIGHGQMDGKKLEETMLAFMDGAYDVLV 817

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLD+P    + I +A   G     + L Q  GR  R+       +      ++
Sbjct: 818 ATTIIENGLDVPNANTIFINNAHNFGL----SDLHQMRGRVGRSNKKAFCYFITPPLVAM 873


>gi|209885332|ref|YP_002289189.1| transcription-repair coupling factor [Oligotropha carboxidovorans
           OM5]
 gi|209873528|gb|ACI93324.1| transcription-repair coupling factor [Oligotropha carboxidovorans
           OM5]
          Length = 1171

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 115/361 (31%), Gaps = 47/361 (13%)

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
              +A   EA      V+  +    AQL    + F P  AV  F             P  
Sbjct: 36  ARAVAARKEAPPVSLAVLCRHTARMAQLTRALEFFAPDVAVMQF-------------PAW 82

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLE----RNDCIVVSSVSCI-YGIGSVESYSQMIVQ 296
           D       S +  I   R +    L          +V++SV+ I   + S ++ +   + 
Sbjct: 83  DCQPYDRVSPHGGILAQRLTTLARLSRLRGGDKPLVVLTSVNAIVQRVPSRDAMAAQALS 142

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           +  G  V    + + L    Y R       G + V G  +++FP+ L D   R   FG+ 
Sbjct: 143 VAPGHRVPMDSITAWLEHNGYSRTSTVREPGEYAVRGGILDLFPAGL-DQPVRFDFFGDT 201

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           +E I  F   T + + ++  + +   S +     T+             R+  + + G  
Sbjct: 202 LESIRTFDAETQRTLLDMRALDLVPVSEFQLTTETIRRF----------RMGYVAQFGAP 251

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV--- 473
               +L        E +        +E++    T R       TLF+Y+   +   +   
Sbjct: 252 DRDDQL-------YEAVSEGRRHPGMEHWQPLFTERM-----DTLFDYLG-GTPFAIEAQ 298

Query: 474 --DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
             D       QI+  Y                 P   D   L   EW+    T  +   T
Sbjct: 299 AEDAVRERFSQINDYYEARREAMEQPGGGAIYKPLPPDKLYLSENEWSERLTTQPLARMT 358

Query: 532 P 532
           P
Sbjct: 359 P 359



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 13/201 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + +  I  +  VD    +R+     + +   + +     +
Sbjct: 771 HVLTLSATPIPRTLQLALTGVRDLSIIASPPVDRLA-VRTFVAPFDPLMIREALLRERYR 829

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +            +  ++L +    ++V   H ++      +I+     GKFD+L+  
Sbjct: 830 GGQAFYVCPRIEDLAEAKDFLDKNVPEMKVAVAHGQMAPGVIEDIMSAFYDGKFDILLST 889

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK+  YA     + + 
Sbjct: 890 TIVESGLDIPNANTLIVHRADMFGLAQ----LYQLRGRVGR---SKLRAYALFTLPAQRK 942

Query: 700 AIDETTRRREK-QLEHNKKHN 719
              +  RR +  Q   N    
Sbjct: 943 ITAQAERRLKVLQSLENLGAG 963


>gi|123442012|ref|YP_001005995.1| transcription-repair coupling factor [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088973|emb|CAL11784.1| transcription-repair coupling factor [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 1148

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 120/297 (40%), Gaps = 35/297 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE    P +++ P+   A +L  E + F P        S ++    +
Sbjct: 22  LTGSACAVECAEIIERHDGPVMLITPDMQTALRLRDEIQQFSPRPVNTL--SDWETLPYD 79

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           ++ P  D        I+ ++  + H  T         I++   + +  +   E      +
Sbjct: 80  SFSPHQDI-------ISARLSCLYHLPT----MERGVIILPINTLMQRVCPHEFLHGHAL 128

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +K G  + + +L + L +  Y+  D  +  G F   G  ++++P   E+  +R+  F +
Sbjct: 129 VMKKGQHLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEE-PYRIDFFDD 187

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           DI+ +  F   T + +  V+ I +     +   +     A++  + + + +         
Sbjct: 188 DIDSLRVFDVDTQRTLSEVDQINLLPAHEFPIDK----NAIELFRSQWREQ--------- 234

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
             E +R  + I    + +  +     IE +          +P PTLF Y+PE++LL 
Sbjct: 235 -FEVRRDAEHI---YQQVSKSIWPAGIEYWQPLF----FNQPLPTLFSYLPENTLLI 283



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E  T+ L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKATQKLAELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 922


>gi|313673697|ref|YP_004051808.1| transcription-repair coupling factor [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940453|gb|ADR19645.1| transcription-repair coupling factor [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 1098

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 81/524 (15%), Positives = 173/524 (33%), Gaps = 93/524 (17%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
            G+ G+ +++  +K++   +R   ++  +  L  +L +E   F   N +  F S    Y 
Sbjct: 7   SGLWGASRSYFFSKIVNKDKR--YLVICDDFLYERLLNELSFFLTRNKLSPFPS----YM 60

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG-IGSVESYSQ 292
            E +         ++S I   I   R +   +LL+    +V +++  +   +   E+   
Sbjct: 61  HEPF---------EKSRILPSIVGERITTLLNLLDGKPAVVFTNIYAVAKKLPPKETIIS 111

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
            I  +K   S ++ EL+  L    +   +I    G +   G  ++ +P +  D+  RV  
Sbjct: 112 SICHIKKNGSFDRDELIYYLDYLGFIHVEIVTDPGEYSFRGSIVDFYPVN-NDLPLRVEF 170

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           F ++IE I E+   T +++  +    I   +  +        A+K               
Sbjct: 171 FDDEIENIFEYNLETQKRVNELREFLIIPATEGIYDLDEFKKAVKN-------------- 216

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
                         T   E  E  G       Y+  +           LF+++ +  +++
Sbjct: 217 --------------TPIEEKAEIYGKFAGHHWYAPLIYQNM-----YQLFDFLNDFDIIY 257

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           + E       I       + R +  A   + +P       L    +         +S   
Sbjct: 258 IGEG------IQKEIDRFYSRLSDCAA-EYEIPEG-----LFRANFIMKNDLYEYLS--- 302

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
              E+     +I E  I+          I   +   + + + + +  +     + TV + 
Sbjct: 303 -DREVVVLSEVISEGSIKNPEYKSTQFLIPPTKNSYQALSNMVEIFKKNRENGIATVFST 361

Query: 593 --RMAEDLT-EYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
                +++T ++  +  I V Y   HSE+           +  G F+             
Sbjct: 362 ESEKFQNVTKDFFRDYEIDVYYPINHSEISKERLNIYPYAITGGFFN------------- 408

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
             +  LV + D +  GF+          GR            +D
Sbjct: 409 -EKDKLVLLRDEEIFGFV--------RRGRKKEKKEVFRTNISD 443



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 66/173 (38%), Gaps = 20/173 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV----EDVYDEINLAA 579
            + +SATP    L+          IR   +++ P E R    T +    EDV   I    
Sbjct: 718 VLAMSATPIPRTLQFSLAG-----IRDISIIETPPEERLPVLTNIINNEEDVKKAIIHEL 772

Query: 580 QQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++G ++          E+    +   L E  + +   H ++   +  + +     GK DV
Sbjct: 773 KRGGQVYYLYNDLSKIEEKAYSIKSMLPEAEVAIA--HGQMDPEKVEKTLDAFYDGKIDV 830

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           LV   ++  G+DIP    + I  ADK G  +    L Q  GR  R+       
Sbjct: 831 LVCSTIIENGIDIPNVNTIIIDGADKFGLSQ----LYQLKGRVGRSRVRGYCY 879


>gi|117929120|ref|YP_873671.1| transcription-repair coupling factor [Acidothermus cellulolyticus
           11B]
 gi|117649583|gb|ABK53685.1| transcription-repair coupling factor [Acidothermus cellulolyticus
           11B]
          Length = 1192

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 91/507 (17%), Positives = 168/507 (33%), Gaps = 78/507 (15%)

Query: 175 GVTGSGKTFTMAKVIEAMQ----RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           GV    + F  A +         RP + +   +  A +L +  +   P  AV  + ++ +
Sbjct: 44  GVPRPLRAFITALIAADAPYGAGRPVLAVTATEREATELATALEPLLPAGAVAEYPAW-E 102

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDR---MRHSAT--RSLLERNDCIVVSSVSCIYGIG 285
               E   PR DT   + +      ++   +R   T  R+LL+            + G+G
Sbjct: 103 TLPHERLSPRADTVGRRVAVRRLLREQGGTLRVITTPVRALLQPQ----------VAGLG 152

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
            +E       +L+ GD  +  ++++ LV   Y R D+   RG   V G  ++IFP   E 
Sbjct: 153 DLEPV-----ELRPGDEADLNDVVARLVAIGYHRVDLVERRGEIAVRGGILDIFPPTAE- 206

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
              RV  FG+ IEEI  F     +      + +   A    +     +  A      EL 
Sbjct: 207 HPLRVEFFGDRIEEIRPFRAGDQRSFGESADRVWATACRELLLTDRVVTRA-----AELA 261

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            R  +L      +                      + +E  +  L           L + 
Sbjct: 262 QRYPQLADILGKVAH----------------GVVVEGMEALAPLLADEM-----NLLLDE 300

Query: 465 IPEDSLLFVDESHVTIPQISGMYR---GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
           +P  +++ V +      + + + R      H     A  G   P  +D        +  +
Sbjct: 301 VPSQTVVVVCDPERVRARAADVVRTGEEFLHAAWAGAAAGGNAP--IDLAAAALRPFADI 358

Query: 522 RPTTIVV-----SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           R     +     S +P    L+               +V    E  + R   + +  ++ 
Sbjct: 359 RRHAADLGLAWWSISP----LQTADAAEFRDDTGEVVIVPDAHEAPAYRGDTQALVADVK 414

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                GLR+ +       A+ + E L   ++  R+     +T+ +     DL      V 
Sbjct: 415 GWLGDGLRVAVLTAGHGSAQRIVEVLAGEDVPARW----TETIPQP-PDHDL------VS 463

Query: 637 VGINLLREGLDIPECGLVAILDADKEG 663
           V    L  G      GLV + + +  G
Sbjct: 464 VSCGGLDAGFIARGAGLVVLTETEIFG 490



 Score = 40.8 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 11/143 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E  +    +  PP E     T V       +   I    
Sbjct: 792 VLTMSATPIPRTLEMAITGIREMSV----IQTPPEERHPVLTFVGPFDEHQIAAAIRREL 847

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     + E     R    H ++      +++       FDVLV
Sbjct: 848 LREGQVFYVHNRVETIEQAAARVRELVPEARVAVAHGQMNEDALEQVMIGFWERAFDVLV 907

Query: 638 GINLLREGLDIPECGLVAILDAD 660
              ++  GLDIP    + +  AD
Sbjct: 908 CTTIIESGLDIPNANTLIVERAD 930


>gi|254372994|ref|ZP_04988483.1| transcription-repair coupling factor,ATP-dependent [Francisella
           tularensis subsp. novicida GA99-3549]
 gi|151570721|gb|EDN36375.1| transcription-repair coupling factor,ATP-dependent [Francisella
           novicida GA99-3549]
          Length = 1141

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 72/447 (16%), Positives = 153/447 (34%), Gaps = 56/447 (12%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE--YFV 226
              ++    GS  +    + ++   +  +++  +   A ++Y E K    +N+     F 
Sbjct: 9   NDTVVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNNSKVDILFF 68

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
              +    + +    D      S   E + +M H    +L      I+ S  + +  I  
Sbjct: 69  PNLEILPYDRFSASIDII----SRRQEILYKMTHQPQNTL------IITSISNTLRKIAP 118

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                +    LK GD++   +    L +  Y   +    +G F + G  I+I+P     V
Sbjct: 119 ASFIQEHSFILKTGDNLNITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPI-GSKV 177

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
           A+R+ +F N+I+ I E    + +    +++I I  +   V        A           
Sbjct: 178 AFRIDLFDNEIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFA----------- 226

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
              L+K  +L   + L   I      ++       IE Y          +   +L++Y+P
Sbjct: 227 ---LDKLNKLCGDKALNSTIA---TYIQNNEYFSGIEFYLPLFY-----DKLFSLYDYLP 275

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
             + + + ++      I         R          L    D   L F          I
Sbjct: 276 PSTNIHLVDN--ITNSIEAFSDEVKFRYNE-------LKHDSDRPILPF--------QEI 318

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPP--VEIRSARTQVEDVYDEINLAAQQGL- 583
             S        +Q + I   Q  +    +     +E  SA  ++ + + ++     +   
Sbjct: 319 FYSQQEIQDIYQQYKNIKWFQQPKSKSKILKVDHLEKISANYKLANPFKDLQQFIDKSNF 378

Query: 584 -RILLTVLTKRMAEDLTEYLYERNIRV 609
            +++ +  +   AE L E+L + N+ +
Sbjct: 379 DKVIFSTDSNGRAELLLEHLNKLNLNI 405



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 91/265 (34%), Gaps = 26/265 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +  I    P   +     ++     +  + + ++    +
Sbjct: 748 ILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDNNI--IREAVSRETIR 805

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +I          ++  E L E      I +   H ++   E  +++ D +  K+ +L+
Sbjct: 806 GGQIFYLYNKVETIQKKKEILQELFPRLRIAIA--HGQMSEKEIQKVMFDFKHNKYHILL 863

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I DA+  G  +    L Q  GR  R+ +            SI
Sbjct: 864 CTTIIETGIDIPNANTLIIEDANNLGLAQ----LHQLRGRVGRSHHQAYAYMLIPNEASI 919

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
               D   R        +        +   +I    + +  E +     +ID   L+L  
Sbjct: 920 TK--DALKRLEAISNAESLGGGFTLANHDLEIRGAGEILGEEQSG----NIDGIGLNLYM 973

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEE 782
                 + +L      A   LN EE
Sbjct: 974 DLLDKTIANL-----QAGKELNIEE 993



 Score = 44.3 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTFT---MAKVIE 190
            ++   F     Y  + DQ +AI  + K  I ++   +L+ G  G GKT      A +  
Sbjct: 584 EEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLAT 643

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
             Q+   ++ P  ILA Q Y+ FK+ F + AV
Sbjct: 644 QNQKQVAILVPTTILAQQHYNSFKDRFTNTAV 675


>gi|119025662|ref|YP_909507.1| transcription-repair coupling factor [Bifidobacterium adolescentis
           ATCC 15703]
 gi|118765246|dbj|BAF39425.1| transcription-repair coupling factor [Bifidobacterium adolescentis
           ATCC 15703]
          Length = 1188

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 93/250 (37%), Gaps = 19/250 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           IA  ++   S     + +GV    +    A       +P +++  +   A +     +++
Sbjct: 37  IAGEIEEPESDIDPSITVGVPDGLRPALAAGAAGK--QPVVLVVASSREAEETVESIRSW 94

Query: 217 FPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
           +  +  +      ++    E   PR DT   + +       R++H    S L     I+V
Sbjct: 95  YDGDPNDVAQLEAWETLPHERLSPRADTVASRMAVF----RRLKHPEEGSTLFGPIRILV 150

Query: 276 SSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             V  +      G+G VE           G+ +   E    LV+  Y R D+ + RG F 
Sbjct: 151 MPVRSLIQPVVAGLGDVEPLV-----FSQGEELLLDEASRKLVENAYTRVDLVMDRGEFA 205

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK-IRNVETIKIYANSHYVTPR 389
           V G  I++FP  L     R+  FG++I+ I EF+    +   +++ T+            
Sbjct: 206 VRGGIIDVFPPTL-PHPVRIEFFGDEIDTIREFHASDQRTYGKDISTVWATPCRELQLTD 264

Query: 390 PTLNTAMKYI 399
                A   I
Sbjct: 265 QIRQRAKSLI 274



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 61/177 (34%), Gaps = 9/177 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 789 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAIRRELLRG 847

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +    +   ++E          H ++   +   +IRD      DVLV   
Sbjct: 848 GQVFYVHNRVQDISSVAAKIHELVPESHVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTT 907

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    TK +
Sbjct: 908 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPTKPM 960


>gi|116252138|ref|YP_767976.1| transcription-repair coupling factor [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256786|emb|CAK07876.1| putative transcription-repair coupling factor [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 1166

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 81/505 (16%), Positives = 153/505 (30%), Gaps = 95/505 (18%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
               P   +  +    A L        P   V               +P  D       S
Sbjct: 36  RTGEPVAYVMSDGHRMADLEQMLGFVAPDIPVLT-------------LPAWDCLPYDRVS 82

Query: 251 INEQIDRMRHSATRSLLERND-----CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
            +      R +A   L+          ++V++ + +  +   +    +    + G+ +  
Sbjct: 83  PSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQKVAPQDVIESLSFSARPGNQLRM 142

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
            +L   L +  ++R       G + V G  +++F    E+   R+  FG+ +E I  F P
Sbjct: 143 DDLAGRLERNGFERVATVREVGEYAVRGGILDVFVPGSEE-PVRLDFFGDTLESIRSFDP 201

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
            + + I  V ++ +   S       T++            R   L   G       L   
Sbjct: 202 ASQRTIGQVRSLDLNPMSEVTLTPDTISRF----------RKNYLSAFGATTRDDALYLA 251

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
           ++              +E++          E   T+F+Y+     + +D         + 
Sbjct: 252 VS-------EGRRYPGMEHWLPLFY-----EKLDTVFDYL-SGFRIVID--------HTV 290

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC----- 540
               +   K  L  Y  RL S     P +      +   T     TPG   L+       
Sbjct: 291 REAAEERSKLVLDYYDARLNSGQ---PAK-----GMTQGTPYKPVTPGQLYLDSKLFAKT 342

Query: 541 ----QGIIVEQIIRPTGLVDPPVEIRSARTQ------------------VEDVYDEINLA 578
                 I +       G     V + + + Q                   + V   I   
Sbjct: 343 LDALGAIRISPFNEHEGEARRVVNVDARQGQRWARANAEGGGDAERINIFDVVVKHIADR 402

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
              G ++L+T  T+   E L + L E  +       +VK +E ++ +  L  G+    V 
Sbjct: 403 RAAGAKVLVTAWTEGSLERLLQVLNEHGLE------KVKPIEALKDVGSLARGEAAAAVL 456

Query: 639 INLLREGLDIPECGLVAILDADKEG 663
              L  G +  +  LV I + D  G
Sbjct: 457 S--LEAGFEAGD--LVVIGEQDILG 477



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 101/281 (35%), Gaps = 48/281 (17%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
              + +SATP    L+     + E  +  T  VD       I    + V  + + +     
Sbjct: 772  HVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLV--IRETLMREHY 829

Query: 581  QGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +G +           ED+  +L      ++V   H ++   E  +I+     G++DVL+ 
Sbjct: 830  RGGQSFYVCPRLADLEDVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLS 889

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  GLD+P    + +  AD  G  +    L Q  GR  R+      L+   + K   
Sbjct: 890  TTIVESGLDVPTANTLIVHRADMFGLAQ----LYQLRGRVGRSKVRAFALFTLPVNK--- 942

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
              +  T  RR K                  +++ +D +       ++        +L  +
Sbjct: 943  -VLTATAERRLK------------------VLQSLDTLGAGFQLASHDLDIRGAGNLLGE 983

Query: 759  KGKAHLK----SLRKQMHLAADNLNFEEA-ARIR--DEIKR 792
            +   H+K     L +QM         EEA A ++  DEI  
Sbjct: 984  EQSGHIKEVGFELYQQML--------EEAVAEVKGVDEIHD 1016


>gi|311898036|dbj|BAJ30444.1| putative transcription-repair-coupling factor [Kitasatospora setae
           KM-6054]
          Length = 1202

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 84/558 (15%), Positives = 162/558 (29%), Gaps = 83/558 (14%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIE-------AMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
             +  L L    + + F +A +            RP + +      A  L +  ++  P 
Sbjct: 26  GHRQHLDLVGPPAARPFAIAALARSLAGRGGERGRPVLAVTATGREAEDLAASLRSLLPA 85

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           +AV  F ++ +    E   PR+DT   + +     + R+ H            +VV+ V 
Sbjct: 86  DAVAEFPAW-ETLPHERLSPRSDTVGRRLAV----LRRIVHPRADDPAAGPVQVVVAPVR 140

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
            +             V L+ G+  +  E+   L    Y R ++   RG F V G  +++F
Sbjct: 141 SVLQPQVKGLAELEPVALRTGERYDLGEVARRLAAAAYARVELVEKRGEFAVRGGILDVF 200

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET-IKIYANSHYVTPRPTLNTAMKY 398
           P   E+   RV  +G+D+EEI  F     + +   E  +        +            
Sbjct: 201 PP-TEEHPLRVEFWGDDVEEIRYFKVADQRSLEIAEHGLWAPPCRELL------------ 247

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
               L  ++     E            +   L+ +    + + +E+ +  L         
Sbjct: 248 ----LTDQVRARAAELAAE-----HPELGEILDKIAQGIAVEGMESLAPVLVDDMEL--- 295

Query: 459 PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH--------------RKATLAEYG--- 501
             L + +P  S+  V +      + + +                    R   L       
Sbjct: 296 --LLDVLPAGSVAVVCDPERVRTRAADLVATSQEFLAASWVAAAAGADRPIDLEAIDVSA 353

Query: 502 ---FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP 558
              + L    ++       W  + P     SA  G  E +               L    
Sbjct: 354 ASLWSLADVREHAAGIGLPWWSVSPFATSDSAVSGVLERD------------ADTLTLGM 401

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
             + + R        +         R+++       A  L E L    I  R +    + 
Sbjct: 402 HAVEAYRGDTARAIADAKDRLAADWRVVMVTEGHGPASRLAEVLGNEGIAARLVADLAEA 461

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
             R             V V    +  G    E  L  + + D  G   S   + +   R 
Sbjct: 462 PTRD-----------VVYVSCGSIEHGFVDEELKLTVVTETDLSGQKSSTKDMRRMPSRR 510

Query: 679 ARNVNSKVILYADTITKS 696
              ++   +   D +   
Sbjct: 511 RNAIDPLALAAGDYVVHE 528



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 65/202 (32%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + +  PP E     T V     + +   I    
Sbjct: 797 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYDEKQISAAIRREL 852

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +     L E     R    H ++   +  +++ D    +FDVLV
Sbjct: 853 LREGQVFYIHNRVESIDKAAARLKELVPEARVATAHGQMGETQLEKVVVDFWEKEFDVLV 912

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R              K  
Sbjct: 913 STTIVESGIDISNANTLIVERGDTFGLSQ----LHQLRGRVGRGRERGYAYMLYPPEKP- 967

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 968 ---LTETAHERLATIAQHTEMG 986


>gi|91977093|ref|YP_569752.1| transcription-repair coupling factor [Rhodopseudomonas palustris
           BisB5]
 gi|91683549|gb|ABE39851.1| transcription-repair coupling factor [Rhodopseudomonas palustris
           BisB5]
          Length = 1172

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 61/362 (16%), Positives = 115/362 (31%), Gaps = 51/362 (14%)

Query: 185 MAKVIEAMQRP----AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           +A+ + A  +P      V+  +     QL    + F P  AV  F             P 
Sbjct: 35  LARAVAARPKPPAVSLAVICRDGPRMQQLARSLEFFAPDVAVMQF-------------PA 81

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLL-----ERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            D       S +  I   R +A   L      ++   ++ +  + +  +   E  +   +
Sbjct: 82  WDCQPYDRVSPHSGILAQRVTALARLSRLAGSDKPLIVLTTVNAAVQRVPMREVIAGQAL 141

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +  G+ V    +++ L    Y R       G + V G  +++FP+ L D   R   FG+
Sbjct: 142 SVAPGNVVPMDSIVAWLEHNGYSRASTVREPGEYAVRGGILDLFPAGL-DQPVRFDFFGD 200

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
            +E I  F   T + +  +  + +   S +     T+             R+  +   G 
Sbjct: 201 QLESIRTFDAETQRTLHAMRGLDLVPVSEFQLISETIRRF----------RMGYVAAFGA 250

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV-- 473
                +L   ++              +E++          E   TLF+Y+P  + + +  
Sbjct: 251 PDRDDQLYSAVS-------EGRRHPGMEHWLPLF-----QERMDTLFDYLP-GAPVAIEP 297

Query: 474 ---DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
              D +     QI+  Y                 P   D   L   EW        +   
Sbjct: 298 QSEDAARERFKQITDYYEARREAMDQPGSGAIYKPLPPDQLYLTDSEWTARLEGASLARL 357

Query: 531 TP 532
           TP
Sbjct: 358 TP 359



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 94/261 (36%), Gaps = 37/261 (14%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + +  I  +  VD    +R+     + +   + +     +
Sbjct: 772  HVLTLSATPIPRTLQLAMTGVRDLSIIASPPVDRLA-VRTFVAPHDPLMIREALLRERYR 830

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +            ++ ++L +    ++V   H ++      +I+     GK+D+L+  
Sbjct: 831  GGQAFYVCPRIDDLAEVKDFLDKHVPEMKVAVAHGQMPPTVIEDIMSAFYDGKYDILLST 890

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + I  AD  G  +    L Q  GR  R+      L+          
Sbjct: 891  TIVESGLDIPTANTLIIHRADMFGLAQ----LYQLRGRVGRSKLRAYALFTLP------- 939

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                             +H I PQ+ +  K+++ ++ +       ++        +L  +
Sbjct: 940  ----------------SQHKITPQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLLGE 983

Query: 759  KGKAHLK----SLRKQMHLAA 775
            +   H+K     L + M   A
Sbjct: 984  EQSGHIKEVGFELYQSMLEEA 1004


>gi|170692379|ref|ZP_02883542.1| transcription-repair coupling factor [Burkholderia graminis C4D1M]
 gi|170142809|gb|EDT10974.1| transcription-repair coupling factor [Burkholderia graminis C4D1M]
          Length = 1160

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 112/333 (33%), Gaps = 51/333 (15%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK--VIEAMQRPAIVMAP- 201
           + Y P    P A+      + + ++     G  GS     +A+  +    + P + +   
Sbjct: 8   SQYSP----PVAL------VKAGQRFAFD-GTHGSSDALLIARYHLAYREKVPLLAVVCE 56

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           + + A +L  E   F P   V               +P  +T      S ++ +   R +
Sbjct: 57  SAVDAQRLSQEIGFFAPDARVRL-------------LPDWETLPYDTFSPHQDLVSERLA 103

Query: 262 ATRSLLERND-CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
               L E     ++V + + +Y +      +        G+ +++ +L + L    Y+  
Sbjct: 104 TLHDLGEGRCDILLVPATTALYRMPPASFLAAYTFSFSQGERLDEAKLKAQLTLAGYEHV 163

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
              +  G + V G  ++++P     + +R+ +F + ++ I  F P T + +  V+ +++ 
Sbjct: 164 SQVVRPGEYCVRGSLLDLYPM-GSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVKDVRLL 222

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
               +                    R     +     E       I  D   +       
Sbjct: 223 PGREFPFDE--------------AARTAFRSRWRETFEGDPSRASIYKD---IGNGVPSA 265

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
            IE Y          +   TLF Y+P+ + L  
Sbjct: 266 GIEYYLPLFF-----DETATLFHYLPQGAQLAF 293



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 24/150 (16%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            QV  +++E+     +          ++M E L     E  I V   H ++   E   ++
Sbjct: 815 GQVYFLHNEVETIENR----------RQMLEALV---PEARIAVA--HGQMHERELERVM 859

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RD    + +VL+   ++  G+D+P    + I  +DK G  +    L Q  GR  R+ +  
Sbjct: 860 RDFVAQRANVLLCTTIIETGIDVPSANTILIHRSDKFGLAQ----LHQLRGRVGRSHHQ- 914

Query: 686 VILYADTITKSIQLAIDETTRRRE--KQLE 713
              YA  +    Q    +  RR E  +Q+E
Sbjct: 915 --AYAYLLVHDPQGLTKQAQRRLEAIQQME 942


>gi|49474197|ref|YP_032239.1| transcription repair coupling factor [Bartonella quintana str.
           Toulouse]
 gi|49239701|emb|CAF26076.1| Transcription repair coupling factor [Bartonella quintana str.
           Toulouse]
          Length = 1166

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 82/541 (15%), Positives = 175/541 (32%), Gaps = 83/541 (15%)

Query: 157 IAQLLKGIHSREKVQLLL-GVTGSGKTFTMAKVIEAM--QRPAIVMAPNKILAAQLYSEF 213
           + +++  I       ++  GVT   + F +AK+   +   +P I +  +    A L    
Sbjct: 4   LKKIV--IPKNISAHMIFDGVTDGFEAFALAKLSSEIAQGKPLIYVVHDGTKIAHLQQVL 61

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
               P+  V  F ++ D    +   P         +    ++  + H A      R   I
Sbjct: 62  NFIEPNLPVLEFPAW-DCLPYDRVSPG-------IAVTARRLSALAHIANLRQNPRPAII 113

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           + ++ + I  +   E     ++  ++G       L+  L    ++R  +    G F V G
Sbjct: 114 LTTANAIIQKLPPRELIETQMIYARVGQRTSMGRLIQFLESNGFERVTVVRDVGEFAVRG 173

Query: 334 DSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
             ++IF P  +E    R+  FGN +E I  F   T + I       +++ S  V     +
Sbjct: 174 GILDIFSPVDVE--PLRLDFFGNTLETIRVFDSETQRTINKKTEFLLHSMSEVVLTPEVI 231

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
           +                +   G       + Q+     E L        +E++  +    
Sbjct: 232 SRFKSN----------YIRTFG-------VSQKNNMLYEALSQGRRFAGMEHWLPFFY-- 272

Query: 453 NPGEPPPTLFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
              E   + F++   +P      ++E  V I     +      RK              +
Sbjct: 273 ---EKLDSFFDHCGNLPLVFEHLIEE--VLIEHYRLIEDYYNARKER------------E 315

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--------- 560
           N       ++ + P  + ++        +Q    +              V          
Sbjct: 316 NDKENSTSYHPIEPNLLYLTPKHVLEIAQQSGQRVDFTPFNVPKTFGQTVIHANVKLGYN 375

Query: 561 -IRSARTQVEDVY----DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
            ++    Q ++V+      I      G ++LL   ++     L + L E           
Sbjct: 376 FVKERNAQEKNVFSSVVHHIASLRAMGKKVLLACWSEGSLNRLVQVLDEHG--------- 426

Query: 616 VKTLERIEIIRDLRLGKFDVL-VGINLLREGLDIPECGLVAILDADKEG--FLRSKTSLI 672
           +K ++  + ++ +R    D +   + ++  G +  +   V I + D  G  F+RS     
Sbjct: 427 LKKIDVAKSLQTVRATPHDCISAAVVMIEHGFETED--FVVIAEQDILGDRFIRSPRRRK 484

Query: 673 Q 673
            
Sbjct: 485 H 485



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 15/192 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             + +SATP    L      + E       P   +     I    T V  + + +     
Sbjct: 768 HVLTLSATPIPRTLGLALSGVRELSLITTPPIDRMAVRTFIAPFDTLV--IRETLLREYY 825

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G +             + EYL      ++++  H ++   +   I+     G++DVL+ 
Sbjct: 826 RGGQSFYVCPRISDLAFVEEYLKTHVPELKFVVAHGQMPAGQLDNIMNAFYDGQYDVLLS 885

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  GLDIP    + +  A+  G     ++L Q  GR  R+      L+     K + 
Sbjct: 886 TTIIESGLDIPTANTLIVHRAEIFGL----SALYQLRGRVGRSKQRAYALFTFPSGKVLT 941

Query: 699 LAIDETTRRREK 710
            A D    RR K
Sbjct: 942 AAAD----RRLK 949


>gi|307261826|ref|ZP_07543490.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868443|gb|EFN00256.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 1149

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 118/319 (36%), Gaps = 38/319 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +  Q L  + G   T  +A+  E     ++V+ P+   A +L           A+  F  
Sbjct: 17  QDHQTLGNLIGHADTLVIAQATEQFNSLSVVVTPDTRTALRL---------EKALMQFSK 67

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-NDCIVVSSVSCIYGIGS 286
                 P +  P  +T      S ++ I   R SA   L +      ++   + +  +  
Sbjct: 68  L-----PVSVFPDWETLPYDNFSPHQDIISARLSALFHLQQGNKQIFLLPINTLLQKVCP 122

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
               +  ++ +K GD    + L   L    Y+  +  +  G + V G  ++++P   E  
Sbjct: 123 PSYLANNVLLIKKGDRFSIQSLRLQLENAGYRAVEQVLEYGEYAVRGALLDLYPMGAES- 181

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ I  F   + + I  +  + +     +    PT +  +++ + + + +
Sbjct: 182 PFRLDFFDDEIDSIRTFDADSQRTIAEINEMNLLPAHEF----PTDSNGIEHFRSKFREQ 237

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             E+ +     E + + Q+++              IE +          E   +LF+Y+ 
Sbjct: 238 FGEIRR-----EPEHIYQQVSK-------GILNAGIEYWQPLFF-----EEMASLFDYLA 280

Query: 467 EDS-LLFVDESHVTIPQIS 484
           E++  +  D       Q  
Sbjct: 281 ENTLFITFDGIAEKAEQFH 299



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 69/179 (38%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  +  +      + I++   Q +D+   + I     +G
Sbjct: 757 ILTLTATPIPRTLNMALNGMRDLSVIAS-PPARRLTIKTFVRQHDDLIVKEAILREILRG 815

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+    L E     R +  H +++  E   ++ D    +F++LV   
Sbjct: 816 GQVYYLHNDVATIENCATKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCST 875

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 876 IIETGIDVPTANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKALTK 930


>gi|114768783|ref|ZP_01446409.1| transcription-repair coupling factor [alpha proteobacterium
           HTCC2255]
 gi|114549700|gb|EAU52581.1| transcription-repair coupling factor [alpha proteobacterium
           HTCC2255]
          Length = 1151

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 80/512 (15%), Positives = 175/512 (34%), Gaps = 72/512 (14%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           + +  L G         ++  I   Q+  I +A           + +      ++ +F  
Sbjct: 6   KNIINLSGAPDGFDANILSNFITEKQKSIIFVA---------RDDKRLDLMRKSLWFFSP 56

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV--SSVSCI-YGI 284
                 P    P  D       S N  +   R +   +L    +  +V  ++++ I   I
Sbjct: 57  NI----PILDFPSWDCLPYDRVSPNADVSSARMATLAALSSGFEAPIVLLTTLNAITQYI 112

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
            +    S       +G ++  KEL +   K  + +       G + + G  I++FP   E
Sbjct: 113 PNRTIVSNNSFVAIVGRTINVKELRAYFSKMGFVQTPTVTEPGDYAIRGGIIDVFPP-GE 171

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
               R+ +FG+++E    F P+T + + N++ I+    S  +    ++N      ++E  
Sbjct: 172 SGPVRMDLFGDELESARRFDPVTQRTVENLDRIEFAPVSEVILDDVSINRFRNNYRKE-- 229

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                    G                E +      Q  E+++ Y           T+F++
Sbjct: 230 -----FGSAGLD----------DPLYEAISAGRKHQGYEHWAPYFHDGME-----TIFDH 269

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +P ++++F+DE+   I   +  + G   +     E        ++++      +  ++P 
Sbjct: 270 LP-NAVIFMDENIERI--HTSRWDGINDQYEARLE-------ALNSKNRLETVYKPIKPE 319

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR-----------TQVEDVYD 573
              VS       L   +      + +PTG     +  R  R              E+   
Sbjct: 320 LFYVSPDDLFDLLNNREQRKFIVLPQPTGPNSLDMRARIGRNFAPERQNEELGLFEEFAK 379

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I    ++   +++  ++    E L   L ++ +           +  I+  +D+     
Sbjct: 380 HIIE-KRKSTSVIIASMSLGARERLYGLLQDQGLSG---------MVNIKTWKDINQSIG 429

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            + + +  L  G + P  GL  I + D  G L
Sbjct: 430 SISLAVWHLEHGFEAP--GLTIISEQDVLGEL 459



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 70/181 (38%), Gaps = 9/181 (4%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + E  +  T  +D    IR+  ++ +   + + +     +
Sbjct: 750 HVLTLTATPIPRTLQLSLSGVRELSVIGTPPIDRLA-IRTYVSEFDTVTLREALLREHYR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++  ++ E+   + ++  H ++   E  E +     GKF +LV  
Sbjct: 809 GGQSFFVVPRISDLPEIEAFIEEQVPEINHVVAHGQMPAGELDERMNAFYDGKFGILVAT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + I  AD  G  +    L Q  GR  R+             + +  
Sbjct: 869 TIVESGLDIPTANTIIIHRADMFGLSQ----LYQIRGRVGRSKTRAYAYLTTKPRQKLTH 924

Query: 700 A 700
           A
Sbjct: 925 A 925


>gi|238920223|ref|YP_002933738.1| transcription-repair coupling factor [Edwardsiella ictaluri 93-146]
 gi|238869792|gb|ACR69503.1| transcription-repair coupling factor, putative [Edwardsiella
           ictaluri 93-146]
          Length = 1153

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 106/290 (36%), Gaps = 37/290 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           ++GS      A++ E    P +++ P+   A +L  E    F    V     +       
Sbjct: 28  LSGSACALECAEIAERHAGPVMLVVPDMQTALRLRDEI-PQFSRQWVTTLADW------- 79

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ-MI 294
                 +T      S ++ I   R S    L      I++  ++ +       S+     
Sbjct: 80  ------ETLPYDSFSPHQDIISARLSCLYHLPGMARGIIILPINTLMQRVCPHSFLHGHA 133

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K G  + +  L + L +  Y+  D  +  G F   G  +++FP   ++  +R+  F 
Sbjct: 134 LVMKKGQRLSRDILRAQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSDE-PYRIDFFD 192

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ +  F   + + +  VE I +     +    PT  TA++  + + +          
Sbjct: 193 DEIDSLRLFDVDSQRTLNEVERIDLLPAHEF----PTDQTAIELFRSQWREHFEVRRDAE 248

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            +   Q++ +RI               IE +          +P PTLF Y
Sbjct: 249 HI--YQQVSKRI-----------WPAGIEYWQPLF----FNQPLPTLFSY 281



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 70/180 (38%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 757 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRMAVKTFVREYDSLV--VREAILRETLR 814

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ A+ L   + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 815 GGQVYYLYNDVDTIQKAADRLATLVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 872

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 873 CTTIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSYHQAYAYLLTPPPKAM 928


>gi|333029973|ref|ZP_08458034.1| transcription-repair coupling factor [Bacteroides coprosuis DSM
           18011]
 gi|332740570|gb|EGJ71052.1| transcription-repair coupling factor [Bacteroides coprosuis DSM
           18011]
          Length = 1123

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 88/230 (38%), Gaps = 19/230 (8%)

Query: 157 IAQLLKGIHSREKVQLL--LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           I  L KG+    K Q++   G+  S   F  + +I   + P + +  +   A   Y +  
Sbjct: 16  IKALSKGLED-IKSQVIHCSGLVASASPFLFSSLIAQKKNPYLFILNDLEDAGYFYHDLC 74

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--C 272
                  V +F S Y              Y +K+++     + +R      L +  D  C
Sbjct: 75  QILGDKNVLFFPSSYRRAIK---------YGQKDAAN----EILRTEVLSRLSKSVDALC 121

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           IV    +    + S    +   +++  GD VE  ++   L    ++  D     G F + 
Sbjct: 122 IVTYPDALAEKVVSESDLNDKTLKIAKGDRVELSQITERLRDLGFEYTDYVYEPGQFAIR 181

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           G  I++F S+  +  +R+  FG++I+ I  F   +      +E I I   
Sbjct: 182 GSLIDVF-SYSSEYPYRIDFFGDEIDSIRSFEVESQLSKEILEKIAIVPT 230



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 15/195 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     II        P+  E+ +   ++  + D IN    +
Sbjct: 710 TLTLTATPIPRTLQFSLMGARDLSIISTPPPNRYPIQTEVHTFNEEI--ITDAINFEMSR 767

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++           DL   + +     R    H ++   E  E I       +DVL+  
Sbjct: 768 NGQVFFVNNRIANLIDLKLMIQKNIPDCRVCIGHGQMDPKEMEETILAFANYDYDVLLST 827

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 828 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLSSLT- 882

Query: 700 AIDETTRRREKQLEH 714
             DE  RRR + +E+
Sbjct: 883 --DE-ARRRLQAIEN 894


>gi|289811031|ref|ZP_06541660.1| excinuclease ABC subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 97

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 70/96 (72%), Positives = 80/96 (83%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           EI   A    R+L+T LTKRMAEDLTEYL E   RVRY+HS++ T+ER+EIIRDLRLG+F
Sbjct: 2   EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 61

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
           DVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ 
Sbjct: 62  DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 97


>gi|163746248|ref|ZP_02153606.1| transcription-repair coupling factor [Oceanibulbus indolifex
           HEL-45]
 gi|161380133|gb|EDQ04544.1| transcription-repair coupling factor [Oceanibulbus indolifex
           HEL-45]
          Length = 1156

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 47/310 (15%), Positives = 104/310 (33%), Gaps = 39/310 (12%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           +   L GV        +   I    +P   +A +    A + +  + + P   V  F   
Sbjct: 5   RNITLSGVPEGFDARAILDEIAKGGQPVAHVARDDKRMAAMQAALRFYAPDMPVFTF--- 61

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER---NDCIVVSSVSCIYGIG 285
                     P  D       S N  I   R +   +L+        ++ +  +    I 
Sbjct: 62  ----------PSWDCLPYDRVSPNADISAQRMATLAALVHGMPDQFVLLTTLNAASQRIP 111

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           + ++        ++G  +++K L   LV+  + +    +  G + V G  I+I+P   + 
Sbjct: 112 ARDTLRDAAFAARVGSRIDEKALRHFLVRMGFVQSPTVMEPGDYAVRGGIIDIYPP-GDL 170

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +FG+ ++    F P T +    ++ +++   S  +     +    +  + E   
Sbjct: 171 GPVRLDLFGDVLDGARRFDPATQRTTEKLDLVELAPVSEVILDDAAITRFRQNYRIE--- 227

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                   G                E +      Q  E++  +           TLF+Y+
Sbjct: 228 ----FGAAGTD----------DPLYEAISAGRKHQGAEHWLAFFHDNLE-----TLFDYL 268

Query: 466 PEDSLLFVDE 475
           P+ ++   D+
Sbjct: 269 PKATITLDDQ 278



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 12/188 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + ++ATP    L+     + +  +  T  VD    IR+  ++ +   + + +     +
Sbjct: 746 HVLTLTATPIPRTLQLSLTGVRDLSVIGTPPVDRL-SIRTYVSEFDAVTIREALLREHYR 804

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ ++L  +   + Y+  H ++   E  + +     GKFDVL+  
Sbjct: 805 GGQSFYVVPRLSDLREIEDFLQAQLPELSYVVAHGQMAPGELDDRMNAFYDGKFDVLLAT 864

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK   YA   TK    
Sbjct: 865 TIVESGLDIPTANTMVVHRADMFGLAQ----LYQIRGRVGR---SKTRAYAYLTTKPRAK 917

Query: 700 AIDETTRR 707
             D   +R
Sbjct: 918 LTDTAQKR 925


>gi|332288167|ref|YP_004419019.1| transcription-repair coupling factor [Gallibacterium anatis UMN179]
 gi|330431063|gb|AEC16122.1| transcription-repair coupling factor [Gallibacterium anatis UMN179]
          Length = 1147

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 114/316 (36%), Gaps = 41/316 (12%)

Query: 163 GIHSREKVQLLLG--VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
            I  + K   +LG  +  S +   + +V    Q   +V+  +   A  L    + F    
Sbjct: 7   NIPKKAKDHKVLGNMIADS-RVLAITEVAAQYQGLVVVVTADMRQANHLAQALQQF--SL 63

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
             + F  +             +T      S +++I   R S    L ++   +V+  +S 
Sbjct: 64  TAQIFSDW-------------ETLPYDNFSPHQEIISTRLSTLFQLQQQQQGVVILPIST 110

Query: 281 IY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
           +   +      +Q +  +K G +   ++L   L+K  Y+  +     G F + G  ++++
Sbjct: 111 LMQRVCPPSYLAQNVFLIKKGQTCRLEQLKLQLIKAGYRAVEQVFEHGEFALRGALLDLY 170

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P     + +R+  F ++I+ I  F   T + I  +  I +     +          +++ 
Sbjct: 171 PMGSA-LPYRLDFFDDEIDSIRTFDVDTQRTIAEIPQIDLLPAHEFPID----EKGIEFF 225

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
           +   +          +  E +R  + I    + +        IE +          E   
Sbjct: 226 RSNFRE---------KFGEIRRDPEHI---YQQISKGTLFAGIEYWQPLFF-----EQMA 268

Query: 460 TLFEYIPEDSLLFVDE 475
           T F+YIP ++L   DE
Sbjct: 269 TFFDYIPINTLFITDE 284



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 69/182 (37%), Gaps = 15/182 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L      I +  I  T      V    +R    +V  V + I     +
Sbjct: 748 ILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLVIKTFVREQDKRV--VREAILREILR 805

Query: 582 GLRILLT---VLTKRMA-EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++      V T +   E L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 806 GGQVYYLHNDVATIQNCAEKLVELVPEARIGIG--HGQMRERELERVMTDFYHQRFNVLV 863

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K +
Sbjct: 864 CTTIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLAPPAKLM 919

Query: 698 QL 699
             
Sbjct: 920 TK 921


>gi|208779432|ref|ZP_03246778.1| transcription-repair coupling factor [Francisella novicida FTG]
 gi|208745232|gb|EDZ91530.1| transcription-repair coupling factor [Francisella novicida FTG]
          Length = 1141

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 72/447 (16%), Positives = 153/447 (34%), Gaps = 56/447 (12%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE--YFV 226
              ++    GS  +    + ++   +  +++  +   A ++Y E K    +N+     F 
Sbjct: 9   NDTVVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNNSKVDILFF 68

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
              +    + +    D      S   E + +M H    +L      I+ S  + +  I  
Sbjct: 69  PNLEILPYDRFSASIDII----SRRQEILYKMTHQPQNTL------IITSISNTLRKIAP 118

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                +    LK GD++   +    L +  Y   +    +G F + G  I+I+P     V
Sbjct: 119 ASFIQEHSFILKTGDNLNITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPI-GSKV 177

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
           A+R+ +F N+I+ I E    + +    +++I I  +   V        A           
Sbjct: 178 AFRIDLFDNEIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFA----------- 226

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
              L+K  +L   + L   I      ++       IE Y          +   +L++Y+P
Sbjct: 227 ---LDKLNKLCGDKALNSTIA---TYIQNNEYFSGIEFYLPLFY-----DKLSSLYDYLP 275

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
             + + + ++      I         R          L    D   L F          I
Sbjct: 276 PSTNIHLVDN--ITNSIEAFSDEVKFRYNE-------LKHDSDRPILPF--------QEI 318

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPP--VEIRSARTQVEDVYDEINLAAQQGL- 583
             S        +Q + I   Q  +    +     +E  SA  ++ + + ++     +   
Sbjct: 319 FYSQQEIQDIYQQYKNIKWFQQPKSKSKILKVDHLEKISANYKLANPFKDLQQFIDKSNF 378

Query: 584 -RILLTVLTKRMAEDLTEYLYERNIRV 609
            +++ +  +   AE L E+L + N+ +
Sbjct: 379 DKVIFSTDSNGRAELLLEHLNKLNLNI 405



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 92/265 (34%), Gaps = 26/265 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +  I    P   +     ++     +  + + ++    +
Sbjct: 748 ILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDNNI--IREAVSRETIR 805

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +I          ++  E L E      I +   H ++   E  +++ D +  K+ +L+
Sbjct: 806 GGQIFYLYNKVETIQKKKEILQELFPRLRIAIA--HGQMSEKEIQKVMFDFKHNKYHILL 863

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I DA+  G  +    L Q  GR  R+ +            SI
Sbjct: 864 CTTIIETGIDIPNANTLIIEDANNLGLAQ----LHQLRGRVGRSHHQAYAYMLIPNEASI 919

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
               D   R        +        +   +I    + +  E +     +ID   L+L  
Sbjct: 920 TK--DALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSG----NIDGIGLNLYM 973

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEE 782
                 + +LR     A   LN EE
Sbjct: 974 DLLDKTIANLR-----AGKELNIEE 993



 Score = 44.3 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTFT---MAKVIE 190
            ++   F     Y  + DQ +AI  + K  I ++   +L+ G  G GKT      A +  
Sbjct: 584 EEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLAT 643

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
             Q+   ++ P  ILA Q Y+ FK+ F + AV
Sbjct: 644 QNQKQVAILVPTTILAQQHYNSFKDRFTNTAV 675


>gi|196229584|ref|ZP_03128449.1| transcription-repair coupling factor [Chthoniobacter flavus
           Ellin428]
 gi|196226816|gb|EDY21321.1| transcription-repair coupling factor [Chthoniobacter flavus
           Ellin428]
          Length = 1082

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 114/282 (40%), Gaps = 29/282 (10%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           V  + + F  A +++  +    ++ PN      +++E   +FP      F    D    E
Sbjct: 35  VVAAAQPFLAALLVQQAKARVWIVCPNVRTQETMHNELLQWFPD---ALFFPEIDRAPVE 91

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
             +P  ++  E+   +       R ++ +        +V++  S    + S  +  Q+ +
Sbjct: 92  GALPDPESIAERLGIV------QRLTSVK----GRQVVVLTRASLDDEVPSPAALKQLEI 141

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
           +L+    +++++LL  L +  Y+       RG F V G  +++F  H   +  R+ +F +
Sbjct: 142 RLRRSTRLDREKLLKQLAEAGYEHVPQVSARGQFAVRGGILDVFSFHHS-LPVRIELFDD 200

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I+ + EF   T   +++++T+ +      +        A   ++E +  R I ++ E  
Sbjct: 201 EIDSLREFDLDTQISVQHLDTVTL------LLGEAAAERASCKLQELVTERDITIDAEAS 254

Query: 416 LLEAQ-RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
              AQ R+ +             + +  E+YS        GE
Sbjct: 255 WFAAQVRIMEH--------SEGAATEGAEDYSTAFFDHGLGE 288



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 17/200 (8%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
           E +  +      + +SATP    L         +      P   +     I     ++  
Sbjct: 664 ERFKEMFKLVDMLTLSATPIPRTLYLSLMGAKDMSTIETPPLNRIPTETLICPYDERI-- 721

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDL 628
           + D IN    +  ++          E + + + +   + R +  H ++   E  +++ + 
Sbjct: 722 IRDAINRELSRQGQVYFLHNRVHSIEMMRDKIKKLCPKARCVIGHGQMDEHELEDVMHEF 781

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G  DVL+   ++  GLDIP    + I  AD+ G       L Q  GR  R    K   
Sbjct: 782 VSGAADVLISTTIIESGLDIPNANTIIIDRADRFGL----ADLYQLRGRVGR-AQHKAYA 836

Query: 689 YADTITKSIQLAIDETTRRR 708
           Y     + +        RRR
Sbjct: 837 YLLLPREMMTQGE---ARRR 853


>gi|303253501|ref|ZP_07339640.1| transcription-repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307248372|ref|ZP_07530395.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302647611|gb|EFL77828.1| transcription-repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855110|gb|EFM87290.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 1149

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 118/319 (36%), Gaps = 38/319 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +  Q L  + G   T  +A+  E     ++V+ P+   A +L           A+  F  
Sbjct: 17  QDHQTLGNLIGHADTLVIAQATEQFNGLSVVVTPDTRTALRL---------EKALMQFSK 67

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-NDCIVVSSVSCIYGIGS 286
                 P +  P  +T      S ++ I   R SA   L +      ++   + +  +  
Sbjct: 68  L-----PVSVFPDWETLPYDNFSPHQDIISARLSALFHLQQGNKQIFLLPINTLLQKVCP 122

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
               +  ++ +K GD    + L   L    Y+  +  +  G + V G  ++++P   E  
Sbjct: 123 PSYLANNVLLIKKGDRFSIQSLRLQLENAGYRAVEQVLEYGEYAVRGALLDLYPMGAES- 181

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ I  F   + + I  +  + +     +    PT +  +++ + + + +
Sbjct: 182 PFRLDFFDDEIDSIRTFDADSQRTIAEINEMNLLPAHEF----PTDSNGIEHFRSKFREQ 237

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             E+ +     E + + Q+++              IE +          E   +LF+Y+ 
Sbjct: 238 FGEIRR-----EPEHIYQQVSK-------GILNAGIEYWQPLFF-----EEMASLFDYLA 280

Query: 467 EDS-LLFVDESHVTIPQIS 484
           E++  +  D       Q  
Sbjct: 281 ENTLFITFDGIAEKAEQFH 299



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 69/179 (38%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  +  +      + I++   Q +D+   + I     +G
Sbjct: 757 ILTLTATPIPRTLNMALNGMRDLSVIAS-PPARRLTIKTFVRQHDDLIVKEAILREILRG 815

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+    L E     R +  H +++  E   ++ D    +F++LV   
Sbjct: 816 GQVYYLHNDVATIENCATKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCST 875

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 876 IIETGIDVPTANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKALTK 930


>gi|118594716|ref|ZP_01552063.1| transcription-repair coupling factor [Methylophilales bacterium
           HTCC2181]
 gi|118440494|gb|EAV47121.1| transcription-repair coupling factor [Methylophilales bacterium
           HTCC2181]
          Length = 1133

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 69/441 (15%), Positives = 148/441 (33%), Gaps = 71/441 (16%)

Query: 177 TGSGKTFTMAKVI----EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           + + ++F + ++     E+  +   +   +   A +L  E   FFP   V          
Sbjct: 18  SNTSQSFEIGRLFCDHLESSGKSLNIFTASVFEATRLKEEISWFFPKLKV---------- 67

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI-VVSSVSCIYGIGSVESYS 291
               ++P  +T    + S +  +   R      + ++   I ++   + ++ +       
Sbjct: 68  ---NHLPDWETLPYDQISPHPDLISERLLTLYEMTQKEFDINLLPLSTSLHFLPPRSYIE 124

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           Q     K G  V+     + LV+  Y   D  +  G F + G  I+++P     V +R+ 
Sbjct: 125 QFSFNFKTGQDVDINAFKNRLVENGYLYVDKVLNPGEFAMRGGIIDLYPM-GSIVPYRID 183

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            F N+I+ I  F   T + +     IK+            ++T  +  +E  +  L +  
Sbjct: 184 FFDNEIDSIRTFDVDTQRSLYPTNKIKLLPARECPLDENGISTFRQNYRERFEGDLAK-- 241

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR-YLTGRNPGEPPPTLFEYIPEDSL 470
                          +   + +        +E Y   +  G +      ++F+Y+ +D L
Sbjct: 242 ---------------SNLYKSISKGTPFAGMEWYLPLFFDGMD------SIFDYLDKDDL 280

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
           +          +                   FRL +    RP        L+P  +++S 
Sbjct: 281 VIQMGDLSKSAESYWSEAESR----------FRLYAYDAERP-------ILQPKDLLIS- 322

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEI---RSARTQVEDVYDEINLAAQQGLRILL 587
            P  +     +    E+I +     +    +   R     ++ +   I   A+   RIL+
Sbjct: 323 -PDDF---FKKIKQHEEIKKTKHAPENIAIVAIDRDVSPPLDRLKTFIKCTAK---RILI 375

Query: 588 TVLTKRMAEDLTEYLYERNIR 608
                   E L E L + +I 
Sbjct: 376 CAEGLGRRESLFELLNQSSID 396



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 91/251 (36%), Gaps = 38/251 (15%)

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLR-- 522
             +  L+ +DE H    +     +        LA     +P  +        E++ +   
Sbjct: 709 FKDLGLVVIDEEHRFGVRQKEKLKAFRRNVDVLALTATPIPRTLSMAMEGLREFSVIATP 768

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
           P   +   T   + +   QGII E + R                Q+  +++E+N      
Sbjct: 769 PQKRLSIKT---FVVNHSQGIIKEAVAREFNR----------GGQIYFLHNEVNTI---- 811

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
                    + M E L+  L +  I V   H +++  E   +++D    + +VL+   ++
Sbjct: 812 ---------QSMHEKLSALLPDAKIGVA--HGQLQEKELERVMQDFHQQRINVLLCSTII 860

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
             G+DIP    + +  ADK G  +    L Q  GR  R+ +     YA  +    +    
Sbjct: 861 ETGIDIPTANTIIMNRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLIDEERKLTS 913

Query: 703 ETTRRRE-KQL 712
              +R E  QL
Sbjct: 914 NAKKRLEAIQL 924


>gi|159030760|emb|CAO88436.1| mfd [Microcystis aeruginosa PCC 7806]
          Length = 265

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 105/255 (41%), Gaps = 12/255 (4%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
           A+L++ +        L G+    K            +  +++  N   AA+  ++ +   
Sbjct: 17  AELIQKLEKN-GNLTLTGLARLPKGLISTAFARCQGKNLLIICANLEEAARWAAQLEAMT 75

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC--IVV 275
                 Y  S    Y  E +   ++    +   ++     +R S+ ++L+   +    +V
Sbjct: 76  WKGVFFYPTSEACPY--ERFNRESEMIWGQMQVLS----ALRRSSGQALISHQEAGIAIV 129

Query: 276 SSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           ++   +   +   E + Q      +G  +E K L  +L +  Y+R  +    G +   GD
Sbjct: 130 TTEKALQPHLPPREVFEQYSDNFAVGRVIEAKNLDLTLARLGYERVSLVETEGQWSRRGD 189

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL-N 393
            ++IFP   E +  R+  FG+++E++ EF P T + + ++  + +   S      P+L  
Sbjct: 190 IVDIFPVSAE-LPVRLEFFGDELEKLREFDPATQRSLDSIPNLLLTPTSFASIIAPSLPP 248

Query: 394 TAMKYIKEELKMRLI 408
           T   Y++ E + +L 
Sbjct: 249 TVADYLEAEEREKLA 263


>gi|304397240|ref|ZP_07379119.1| transcription-repair coupling factor [Pantoea sp. aB]
 gi|304355389|gb|EFM19757.1| transcription-repair coupling factor [Pantoea sp. aB]
          Length = 1147

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 115/311 (36%), Gaps = 40/311 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + S +  QL  G + G+      A + E    P +++ P+   A +L  E + F      
Sbjct: 11  VKSGDHRQL--GQIIGAAHAVECASITEHHAGPVLMITPDTQTALRLLDEIRQFTD---- 64

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                      P  ++   +T      S ++ I   R S    L      +++  V+ + 
Sbjct: 65  ----------LPVTHLADWETLPYDSFSPHQDIISARLSTLYQLPVMQRGMLIMPVNTLM 114

Query: 283 GIGSVESYSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                 S+     + +K G  + +  L   L +  Y+  D  +  G +   G  +++FP 
Sbjct: 115 QRVCPHSFLHGHALVMKQGQKLSRDRLRDQLEQAGYRHVDQVMEHGEYATRGALLDLFPM 174

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
              D  +R+  F ++I+ +  F   + + +  V  I +     + + +     A++  + 
Sbjct: 175 -GSDQPYRIDFFDDEIDSLRLFDVDSQRTLEAVTEINLLPAHEFPSDK----AAIELFRS 229

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             +             E++ + Q+++              IE +          +P P+L
Sbjct: 230 RWRE------IFDVRRESEHVYQQVSK-------GTLPAGIEYWQPLF----FEQPLPSL 272

Query: 462 FEYIPEDSLLF 472
           F Y+P+++L+ 
Sbjct: 273 FSYLPDNTLIV 283



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R     V  + + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREFDDLV--IREAILREVLR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E   + L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKAAQRLSELVPEARVAIGHGQMRERDLERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           KS+
Sbjct: 869 TIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKSM 922


>gi|307257406|ref|ZP_07539175.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864058|gb|EFM95972.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 1149

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 120/319 (37%), Gaps = 38/319 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +  Q L  + G   T  +A+  E     ++V+ P+   A +L           A+  F  
Sbjct: 17  QDHQTLGNLIGHADTLVIAQATEQFNGLSVVVTPDTRTALRL---------EKALMQFSK 67

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGS 286
                 P +  P  +T      S ++ I   R SA   L + N  I +  +S  +  +  
Sbjct: 68  L-----PVSVFPDWETLPYDNFSPHQDIISARLSALFHLQKGNKQIFLLPISTLLQKVCP 122

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
               +  ++ +K GD    + L   L    Y+  +  +  G + V G  ++++P   E  
Sbjct: 123 PSYLANNVLLIKKGDRFSIQSLRLQLENAGYRAVEQVLEYGEYAVRGALLDLYPMGAES- 181

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ I  F   + + I  +  + +     +    PT +  +++ + + + +
Sbjct: 182 PFRLDFFDDEIDSIRTFDADSQRTIAEINEMNLLPAHEF----PTDSNGIEHFRSKFREQ 237

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             E+ +     E + + Q+++              IE +          E   +LF+Y+ 
Sbjct: 238 FGEIRR-----EPEHIYQQVSK-------GILNAGIEYWQPLFF-----EEMASLFDYLA 280

Query: 467 EDS-LLFVDESHVTIPQIS 484
           E++  +  D       Q  
Sbjct: 281 ENTLFITFDGIAEKAEQFH 299



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 69/179 (38%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  +  +      + I++   Q +D+   + I     +G
Sbjct: 757 ILTLTATPIPRTLNMALNGMRDLSVIAS-PPARRLTIKTFVRQHDDLIVKEAILREILRG 815

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+    L E     R +  H +++  E   ++ D    +F++LV   
Sbjct: 816 GQVYYLHNDVATIENCATKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCST 875

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 876 IIETGIDVPTANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKALTK 930


>gi|85705340|ref|ZP_01036439.1| transcription-repair coupling factor [Roseovarius sp. 217]
 gi|85670213|gb|EAQ25075.1| transcription-repair coupling factor [Roseovarius sp. 217]
          Length = 1150

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 106/333 (31%), Gaps = 42/333 (12%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           + +   + G         +   +     P + +A +    A + +  + F P   V  F 
Sbjct: 3   KAQHITVGGAPEGFDARLILAEVAKTGAPVLHIARDDKRMAAMQAALRFFAPDMPVMTF- 61

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER---NDCIVVSSVSCIYG 283
                       P  D       S N  I   R +    L+        ++ +  +    
Sbjct: 62  ------------PGWDCLPYDRVSPNADISATRMATLAGLVHGGPSQFVLLTTLNAASQR 109

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           + + +          +G+ ++ K L   LV+  + +       G + + G  I+I+P   
Sbjct: 110 VPARDVLRDAAFVAAVGERIDDKALRDFLVRMGFTQAPTVTEPGDYALRGGIIDIYPP-G 168

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           E    R+ +FG+ ++ I  F P T +    +  +++   S  +     +    +  + E 
Sbjct: 169 EGGPVRLDLFGDVLDGIRRFDPATQRTTEKLSRVELAPVSEVILDEEAIRRFRQNYRIE- 227

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
                     G                E +        +E++  +   R  G     LFE
Sbjct: 228 ------FGAAGTD----------DPLYEAVSAGRKHAGVEHWLPFFHERLEG-----LFE 266

Query: 464 YIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           Y+P  + + +DE     PQ    +     +  T
Sbjct: 267 YLPA-ATITLDE--QVTPQRLARWDSIADQYET 296



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 69/178 (38%), Gaps = 9/178 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ + V   + +     +
Sbjct: 745 HVLTLTATPIPRTLQLSLSGVRDLSIIGTPPVDRLA-IRTYVSEFDSVTVREALLREHYR 803

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ ++L  +   V Y+  H ++   E  + +     GK+DVL+  
Sbjct: 804 GGQSFYVVPRISDLPEIEDFLKTQVPEVTYVIAHGQMAAGELDDRMNAFYDGKYDVLLAT 863

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  GLDIP    + I  AD  G  +    L Q  GR  R+               +
Sbjct: 864 TIVESGLDIPTANTMIIHRADMFGLSQ----LYQIRGRVGRSKTRAYAYLTTKPRAPL 917


>gi|119386518|ref|YP_917573.1| transcription-repair coupling factor [Paracoccus denitrificans
           PD1222]
 gi|119377113|gb|ABL71877.1| transcription-repair coupling factor [Paracoccus denitrificans
           PD1222]
          Length = 1154

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 110/334 (32%), Gaps = 43/334 (12%)

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
              L G         +A+ +     P   +A +    A + +    F P  AV  F    
Sbjct: 7   HLTLSGAPEGMDAALIARELSRGN-PVTHIARDDRRMAAMRAALGFFAPSAAVLEF---- 61

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL----LERNDCIVVSSVSCIYGIG 285
                    P  DT      S    +   R +   +L    L+    ++ +  + +  + 
Sbjct: 62  ---------PAWDTTPYDRVSPAPGVMAARMAVLTALAHGALKGPFVLLTTLSAAMQRVP 112

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           + E+         +GD +++  L + L +  + +       G F V G  I+IFP   + 
Sbjct: 113 AREALRDAGFSAAVGDRMDEGALRAFLARMGFVQAPTVTEPGDFAVRGGIIDIFPP-GDT 171

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ MFG+ ++    F   T + I  ++ I++   S  +     +    +  + E   
Sbjct: 172 GPIRLDMFGDVLDGARRFDAETQRSIEKLDRIELAPMSEVILDEAAITRFRQNYRAEYG- 230

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                      L             E +        +E++  +   R       +LF+Y+
Sbjct: 231 -----GGANDPL------------YEGISAGRKMAGMEHWLPWFHVRLE-----SLFDYL 268

Query: 466 PEDSLLFVDE-SHVTIPQISGMYRGDFHRKATLA 498
           P  S++  D    V   +   +      R+  LA
Sbjct: 269 PGASVVADDHLDQVRGARWHTITEQFEARREALA 302



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 37/259 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 753 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRL-SIRTYVSEFDGVTIREALLREKYR 811

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ E+L E    V  +  H ++   +    +        DVL+  
Sbjct: 812 GGQSFFVVPRLADLPEVEEWLREHVPEVSTIVAHGQLAAGDLDRRMNAFYDRGADVLLAT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+               +  
Sbjct: 872 TIVESGLDIPTANTMVVWRADMFGLAQ----LYQIRGRVGRSKTRAYCYLTTKPRVPL-- 925

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                                 PQ+++  K +  ID +       +         +L  +
Sbjct: 926 ---------------------TPQAMRRLKFLGAIDSLGAGFNLASQDLDLRGAGNLLGE 964

Query: 759 KGKAHLK----SLRKQMHL 773
           +   H+K     L +QM  
Sbjct: 965 EQSGHIKEVGFELYQQMLE 983



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 108 RLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSR 167
           +LI      +   ++  P       +H   I  F  +  Y  + DQ +AIA + + + + 
Sbjct: 565 KLIADKLMRVAAERMLRPAPVLEPEHHE--IESFAARFPYAETEDQASAIADVAEDLAAG 622

Query: 168 EK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
               +L++G  G GKT      A +  +  R   V+AP  +LA Q +  F   F   A+
Sbjct: 623 RPMDRLVVGDVGFGKTEVAMRAAFIAASQGRQVAVVAPTTLLARQHFRTFAERFRGTAI 681


>gi|114764341|ref|ZP_01443569.1| transcription-repair coupling factor [Pelagibaca bermudensis
           HTCC2601]
 gi|114543289|gb|EAU46306.1| transcription-repair coupling factor [Roseovarius sp. HTCC2601]
          Length = 1158

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 112/324 (34%), Gaps = 43/324 (13%)

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242
             +A+V E    P I +A +    A L      F P   V  F             P  D
Sbjct: 19  LILAEV-EKADGPVIHVARDDKRMAALQEALAFFAPDMPVVSF-------------PAWD 64

Query: 243 TYIEKESSINEQIDRMRHSATRSL---LERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
                  S N  I   R S   +L   + +   ++ +  +    I + E         ++
Sbjct: 65  CLPYDRVSPNPDISAARMSTLAALVHAMPQRFVLLTTLSAATQYIPARELLRDAAFSARV 124

Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359
           GD +++K L   LV+  + +       G + + G  I+IFP   E    R+ +FG+ ++ 
Sbjct: 125 GDRIDEKALRDFLVRMGFSQAPTVTEPGDYAIRGGIIDIFPP-GEGGPVRLDLFGDVLDG 183

Query: 360 ISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419
              F  ++ +    ++ +++   S  +     +    +  + E           G     
Sbjct: 184 ARRFDAVSQRTTEKLDLVELAPVSEVILDEAAITRFRQNYRIE-------FGAGGTD--- 233

Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE--SH 477
                      E +      Q +E++  +   R       TLF+Y+P    L +D+  + 
Sbjct: 234 -------DPLYEAVSAGRKQQGMEHWLPFFHDRLE-----TLFDYLP-GVPLLMDDQLTP 280

Query: 478 VTIPQISGMYRGDFHRKATLAEYG 501
             + +   +      R+  +A+ G
Sbjct: 281 ARLARWESIEDQYQTRRHAMAQKG 304



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 12/188 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 753 HVLTLTATPIPRTLQLSLSGVRDLSIIGTPPVDRL-SIRTYVSEFDAVTIREALLREHYR 811

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ E+L E+   V Y+  H ++   E  E +     GKFDVL+  
Sbjct: 812 GGQSFYVVPRISDLAEIEEFLREQVPEVSYVVAHGQMAAGELDERMNAFYDGKFDVLLAT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  +D  G  +    L Q  GR  R   SK   YA   T+    
Sbjct: 872 TIVESGLDIPTANTMVVHRSDMFGLSQ----LYQIRGRVGR---SKTRAYAYLTTQPRAK 924

Query: 700 AIDETTRR 707
             D   +R
Sbjct: 925 LTDTAQKR 932


>gi|310767325|gb|ADP12275.1| transcription-repair coupling factor [Erwinia sp. Ejp617]
          Length = 1148

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/312 (18%), Positives = 118/312 (37%), Gaps = 38/312 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + SR   Q  LG + G+      A++ +    P +++A +   A +L  E K F      
Sbjct: 9   LPSRAGDQRQLGQLIGAACAVECAEIADRHHGPVLLIAHDMQNALRLQDEIKQFTD---- 64

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                     QP   +   +T      S +++I   R S    L      I++  V+ + 
Sbjct: 65  ----------QPVMALADWETLPFDGFSPHQEIISSRLSTLYQLPTLASGILILPVNTLM 114

Query: 283 GIGSVESYSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                 ++     + ++ G  + + +L S L +  Y+  D  +  G F   G  ++++P 
Sbjct: 115 QRVCPHNFLHGHALVMQKGQKLSRDKLRSQLEQAGYRSVDQVMEHGEFATRGALLDLYPM 174

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E   +R+  F ++I+ +  F   + +    V  I +     +    PT   A++  + 
Sbjct: 175 GSE-RPYRIDFFDDEIDSLRLFDVDSQRTQEEVAAINLLPAHEF----PTDKNAIELFRS 229

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +             EA+ + Q+++              IE +        P +P   L
Sbjct: 230 QWRE------HFDVRREAEHIYQQVSK-------GTLPAGIEYWQPLF-FEQPLQP---L 272

Query: 462 FEYIPEDSLLFV 473
           F Y+P ++LL +
Sbjct: 273 FSYLPVNTLLVM 284



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 7/176 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+          V + I     +G 
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDEMAVREAILREVLRGG 810

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E  T+ L E     R    H +++  E   ++ D    +F+VLV   +
Sbjct: 811 QVYYLYNDVENIEKATKRLSELVPEARVALGHGQMRERELERVMNDFHHQRFNVLVCTTI 870

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  G+DIP    + I  AD+ G  +    L Q  GR  R+ +           K++
Sbjct: 871 IETGIDIPTANTIIIERADRFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|53728955|ref|ZP_00134409.2| COG1197: Transcription-repair coupling factor (superfamily II
           helicase) [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126208803|ref|YP_001054028.1| transcription-repair coupling factor [Actinobacillus
           pleuropneumoniae L20]
 gi|126097595|gb|ABN74423.1| transcription-repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 1149

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 118/319 (36%), Gaps = 38/319 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +  Q L  + G   T  +A+  E     ++V+ P+   A +L           A+  F  
Sbjct: 17  QDHQTLGNLIGHADTLVIAQATEQFNGLSVVVTPDTRTALRL---------EKALMQFSK 67

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-NDCIVVSSVSCIYGIGS 286
                 P +  P  +T      S ++ I   R SA   L +      ++   + +  +  
Sbjct: 68  L-----PVSVFPDWETLPYDNFSPHQDIISARLSALFHLQQGNKQIFLLPINTLLQKVCP 122

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
               +  ++ +K GD    + L   L    Y+  +  +  G + V G  ++++P   E  
Sbjct: 123 PSYLANNVLLIKKGDRFSIQSLRLQLENAGYRAVEQVLEYGEYAVRGALLDLYPMGAES- 181

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ I  F   + + I  +  + +     +    PT +  +++ + + + +
Sbjct: 182 PFRLDFFDDEIDSIRTFDADSQRTIAEINEMNLLPAHEF----PTDSNGIEHFRSKFREQ 237

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             E+ +     E + + Q+++              IE +          E   +LF+Y+ 
Sbjct: 238 FGEIRR-----EPEHIYQQVSK-------GILNAGIEYWQPLFF-----EEMASLFDYLA 280

Query: 467 EDS-LLFVDESHVTIPQIS 484
           E++  +  D       Q  
Sbjct: 281 ENTLFITFDGIAEKAEQFH 299



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 69/179 (38%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  +  +      + I++   Q +D+   + I     +G
Sbjct: 757 ILTLTATPIPRTLNMALNGMRDLSVIAS-PPARRLTIKTFVRQHDDLIVKEAILREILRG 815

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+    L E     R +  H +++  E   ++ D    +F++LV   
Sbjct: 816 GQVYYLHNDVATIENCATKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCST 875

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 876 IIETGIDVPTANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKALTK 930


>gi|170744353|ref|YP_001773008.1| transcription-repair coupling factor [Methylobacterium sp. 4-46]
 gi|168198627|gb|ACA20574.1| transcription-repair coupling factor [Methylobacterium sp. 4-46]
          Length = 1203

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 94/551 (17%), Positives = 171/551 (31%), Gaps = 86/551 (15%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR-PAIVMAPNKILAAQLYSEF 213
           AA+ + ++ +   +    L  V        +A +   + + P    +        +  + 
Sbjct: 27  AALTRAVEALRRGDSP-TLARVPDGFDALVVADLARVLGQDPQSRASQGPAALVHVARDG 85

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAY---VPRTDTYIEKESSINEQIDRMRHSATRSLL--- 267
                      F     +  PE     +P  D       S N  I   R +A   L    
Sbjct: 86  TRSAA------FAGALAFVAPEIEVLSIPAWDCQPYDRVSPNPAIAAERMTALSRLARTR 139

Query: 268 ---ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
              ER   +V +  + +  + + +  +       +G++V+  ++++ L    + R     
Sbjct: 140 SSEERPRVVVTTVNALVQRVPARDRIAVETFSAAVGNAVDTDKIVAWLEANGFLRTGTVR 199

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
             G + V G  I++ P  L     R+  FG+ +E I  F P T + I  + ++ +   S 
Sbjct: 200 DTGEYAVRGGIIDLSPPGL-PNPVRLDFFGDTLESIRSFDPETQRTIGQLRSLDLVPMSE 258

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
                 T+             R   +   G      RL        E +        +E+
Sbjct: 259 VQLTTETIRRF----------RQGYVAAFGAATRDDRL-------YEAVSEGRRAAGLEH 301

Query: 445 YSRYLTGRNPGEPPPTLFEY-------IPEDSLLFVDESHVTIPQISGMYRGDFHRKATL 497
           +      R       TLF+Y         +D     D +   + Q+   +     R   L
Sbjct: 302 WMPLFYDRL-----DTLFDYLAGVPLVFDKD---VDDAAGERLGQVQEYHD---ARCEAL 350

Query: 498 AEYGFRL----PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
                 +    P   D   L   EW        V   TP           + E   RP  
Sbjct: 351 KAPQPGVAPYKPLGSDALYLSPAEWAKRVEGARVARLTP---------FAVPESPGRP-- 399

Query: 554 LVDPPVE----IRSARTQ-----VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           +VD   E        R Q      +     +      G  ++L   ++   + L   L +
Sbjct: 400 IVDCEAEPARNFAPERAQEGVNVFDAAVQHVRALQGSGHHVILAAWSEGSRDRLCGVLTD 459

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKE 662
             +       + KT+ R+     L+ G+ DV V +  L  G  I    +VA  D   D+ 
Sbjct: 460 HGLP------KPKTVTRLSDTLALKRGQ-DVAVAVWGLEAGFTIERLAVVAEGDILGDRL 512

Query: 663 GFLRSKTSLIQ 673
              + K    Q
Sbjct: 513 VRPKRKAKRPQ 523



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 75/191 (39%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  T  VD    +R+  T  + +   + +     +
Sbjct: 803 HVLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLA-VRTFVTPFDPLLVREALLRERYR 861

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V      +++  +L       +    H ++   +  +++     GKFD+L+  
Sbjct: 862 GGQAFYVVPRIEHLDEVKRFLDREMPEAKVGIAHGQMPAGQLEDVMTAFYEGKFDILLST 921

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K++ +
Sbjct: 922 TIVESGLDIPTANTLIVHRADMFGLAQ----LYQLRGRVGRSKARAYALFTTPEGKALTV 977

Query: 700 AIDETTRRREK 710
              +  RR + 
Sbjct: 978 ---QAERRLKV 985



 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            Y  + DQ AAIA  L  + +     +L+ G  G GKT      A V     R   V+ P
Sbjct: 651 PYEETEDQEAAIAATLGDLTAGRPMDRLICGDVGFGKTEVALRAAFVAAISGRQVAVVVP 710

Query: 202 NKILAAQLYSEFKNFFPHNAV 222
             +LA Q Y  F   F    V
Sbjct: 711 TTLLARQHYRTFAERFKGLPV 731


>gi|332519222|ref|ZP_08395689.1| transcription-repair coupling factor [Lacinutrix algicola 5H-3-7-4]
 gi|332045070|gb|EGI81263.1| transcription-repair coupling factor [Lacinutrix algicola 5H-3-7-4]
          Length = 1120

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 97/230 (42%), Gaps = 14/230 (6%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV-SYYDY 231
           L G+ GS  +F +++  +  Q+P +++  +K  AA   ++F+       V ++  SY   
Sbjct: 40  LKGLVGSSLSFVVSESFKNAQKPFLLIFNDKEEAAFYLNDFEQLLNSKDVLFYPGSYRRP 99

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           YQ           IE+  + N  +     +   S  ++   IV    +    + + +   
Sbjct: 100 YQ-----------IEETDNANVLLRAEVLNRINS-QKKPAIIVTYPDALFEKVVTRKELE 147

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           +  +++ +GD +    +   L + ++KR D     G F V G  +++F S   D  +R+ 
Sbjct: 148 RNTLKINVGDDLNIDFVNEVLFEYKFKRVDFVTEPGEFSVRGGIVDVF-SFSHDEPYRIE 206

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
            FG++++ I  F   T      ++ I I  N        +  +  KYI +
Sbjct: 207 FFGDEVDSIRTFDVETQLSNEQIKKIGIIPNVENKFLEESRASFFKYIAQ 256



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 12/190 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+       +  +I        P+E    R   E + D ++   Q+G 
Sbjct: 713 VLTLTATPIPRTLQFSLMAARDLSVITTPPPNRFPIESNVIRFNEETIRDAVSYEIQRGG 772

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          +++   L       +    H ++   +  E++     G FDVLV   +
Sbjct: 773 QIFFIHNRIENIKEVAGMLQRLVPDAKIGIGHGQLDGKKLEELMLAFINGDFDVLVSTTI 832

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+P    + I +A+  G     + L Q  GR  R+       +      ++    
Sbjct: 833 IESGLDVPNANTIFINNANNFGL----SDLHQMRGRVGRSNKKAFCYFITPGYDAM---- 884

Query: 702 DETTRRREKQ 711
                R+  Q
Sbjct: 885 -TPDARKRIQ 893


>gi|306823175|ref|ZP_07456551.1| transcription-repair coupling factor [Bifidobacterium dentium ATCC
           27679]
 gi|309801612|ref|ZP_07695733.1| transcription-repair coupling factor [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553807|gb|EFM41718.1| transcription-repair coupling factor [Bifidobacterium dentium ATCC
           27679]
 gi|308221744|gb|EFO78035.1| transcription-repair coupling factor [Bifidobacterium dentium
           JCVIHMP022]
          Length = 1173

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 90/248 (36%), Gaps = 31/248 (12%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            +  G+    +  L  G  GS              RP +++  +   A +     ++++ 
Sbjct: 36  SITVGVPEGLRPALAAGAAGS--------------RPVVLVVASGREAEETVEAIRSWYG 81

Query: 219 HNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
            +  +      ++    E   PR DT   + +       R++H    + +     I+V  
Sbjct: 82  GDPQDVAQLEAWETLPHERLSPRADTVASRMAVF----RRLKHPEEGNAMFGPIRILVMP 137

Query: 278 VSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           V  +      G+G +E           G+ +   E    LV+  Y R D+ + RG F V 
Sbjct: 138 VRSLIQPVVAGLGDIEPLV-----FTQGEELALDEASKRLVESAYTRVDLVMDRGEFAVR 192

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIKIYANSHYVTPRPT 391
           G  I++FP  L     R+  FG++I+ I +F+    +     ++++              
Sbjct: 193 GGIIDVFPPTL-PHPVRIEFFGDEIDAIKQFHASDQRTYGEPLDSVWATPCRELQLTDAV 251

Query: 392 LNTAMKYI 399
            N A   I
Sbjct: 252 RNRAKSLI 259



 Score = 42.0 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 774 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQITAAVRRELLRG 832

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +    +   ++E          H ++   +   +IRD      DVLV   
Sbjct: 833 GQVFYVHNRVQDIASVAAKIHELVPEAHVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTT 892

Query: 641 LLREGLDIPECGLVAILDADKEGFLR 666
           ++  GLDI     + +  AD+ G  +
Sbjct: 893 IIETGLDISNANTLIVDHADRFGLSQ 918


>gi|299133932|ref|ZP_07027126.1| transcription-repair coupling factor [Afipia sp. 1NLS2]
 gi|298591768|gb|EFI51969.1| transcription-repair coupling factor [Afipia sp. 1NLS2]
          Length = 1172

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/440 (16%), Positives = 141/440 (32%), Gaps = 40/440 (9%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G+  S     +A   +A      V+  +    AQL    + F P   V  F  + D    
Sbjct: 29  GLIVSDLARAVAARKDAPAVSLAVLCRDGARMAQLARALEFFAPDVDVMQFPGW-DCQPY 87

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           +   P      ++ +++       R S      ++   ++ S  + +  + + ++ +   
Sbjct: 88  DRVSPHGGILAQRLTTLA------RLSRLAGGGDKPLVVLTSVNAVVQRVPARDAMAAQA 141

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +  G  V    + + L    Y R       G + V G  +++FP+ L D   R   FG
Sbjct: 142 LSVAPGHRVPMDSITAWLEHNGYSRTSTVREPGEYAVRGGILDLFPAGL-DQPVRFDFFG 200

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           + +E I  F   T + + ++  + +   S +     T+             R+  + + G
Sbjct: 201 DTLESIRTFDAETQRTLLDMRALDLVPVSEFQLTTETIRRF----------RMGYVAQFG 250

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV- 473
                 +L        E +        +E++          E   TLF+Y+ + +   V 
Sbjct: 251 APDRDDQL-------YEAVSEGRRHPGMEHWQPLFV-----EKMDTLFDYL-DGTPFAVE 297

Query: 474 ----DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
               D       QI   Y                 P   D   L   EWN       +  
Sbjct: 298 PQAEDAVRERYKQIGDYYEARREAMEHPGGGAIYKPLPPDKLYLAESEWNEKLSAQALAR 357

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
            TP        +G  V  I    G    P    +     E V   +N    +  ++++ +
Sbjct: 358 MTP----FAMPEGEAVIDIGARQGRDFAPERADATVNVFESVVAHVNSLHAERKKVVVAL 413

Query: 590 LTKRMAEDLTEYLYERNIRV 609
            ++   E +   L +  +  
Sbjct: 414 WSEGSRERMASMLKDHKLVA 433



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 73/202 (36%), Gaps = 15/202 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + +  I  +  VD    +R+     + +   + +     +
Sbjct: 772 HVLTLSATPIPRTLQLALTGVRDLSIIASPPVDRLA-VRTFVAPFDPLMIREALLRERYR 830

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +            +  ++L +    ++V   H ++      +I+     GKFD+L+  
Sbjct: 831 GGQAFYVCPRIDDLAEAKDFLDKNVPEMKVAVAHGQMPPSVIEDIMSAFYDGKFDILLST 890

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+        Q 
Sbjct: 891 TIVESGLDIPNANTLIVHRADMFGLAQ----LYQLRGRVGRSKLRAYALFTLP----AQR 942

Query: 700 AIDETTRRREK--QLEHNKKHN 719
            I     RR K  Q   N    
Sbjct: 943 QITAQAERRLKVLQSLENLGAG 964


>gi|254486916|ref|ZP_05100121.1| transcription-repair coupling factor [Roseobacter sp. GAI101]
 gi|214043785|gb|EEB84423.1| transcription-repair coupling factor [Roseobacter sp. GAI101]
          Length = 1174

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 107/334 (32%), Gaps = 42/334 (12%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           +      L GV        +   +     P + +A +    A + S  + F P   V  F
Sbjct: 14  ANSSYITLSGVPEGFDARALLDELGKHDVPVLHVARDDKRMAAMQSALRFFAPDVPVVTF 73

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER---NDCIVVSSVSCIY 282
                        P  D       S N  I   R +    L+        ++ +  +   
Sbjct: 74  -------------PGWDCLPYDRVSPNADISAQRMATLAGLVHGMPDKYILLTTLNAATQ 120

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            + + +         ++GD +++  L + LV+  + +       G + + G  I+I+P  
Sbjct: 121 RLPARDILRDAAFSARVGDRIDEAALRNFLVRMGFVQSPTVTEPGDYAIRGGIIDIYPP- 179

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            +    R+ +FG+ ++    F   T +    ++ +++   S  +     +    +  + E
Sbjct: 180 GDLGPVRLDLFGDTLDGARRFDAATQRTTEKLDQVELAPVSEVILDEGAITRFRQNYRIE 239

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
                      G                E +      Q  E++  +           TLF
Sbjct: 240 -------FGAAGTD----------DPLYEAISAGRKHQGAEHWMSFFHAELE-----TLF 277

Query: 463 EYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           +Y+P+ + + +D+     PQ    +     +  T
Sbjct: 278 DYLPK-ATVTLDD--QLTPQRLARWESIADQYET 308



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 74/188 (39%), Gaps = 12/188 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 766 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA-IRTYVSEFDTVTLREALLREHYR 824

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++  +L  +   + Y+  H ++   E  + +     GK+D+L+  
Sbjct: 825 GGQSFYVVPRISDLAEIEAFLKAQLPELTYLVAHGQMAAGELDDRMNAFYDGKYDILLAT 884

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK   YA   TK    
Sbjct: 885 TIVESGLDIPTANTMIVHRADMFGLAQ----LYQIRGRVGR---SKTRAYAYLTTKPRAK 937

Query: 700 AIDETTRR 707
                 +R
Sbjct: 938 LTATAEKR 945


>gi|303250575|ref|ZP_07336772.1| transcription repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252980|ref|ZP_07534867.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650563|gb|EFL80722.1| transcription repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859509|gb|EFM91535.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 1149

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 120/319 (37%), Gaps = 38/319 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +  Q L  + G   T  +A+  E     ++V+ P+   A +L           A+  F  
Sbjct: 17  QDHQTLGNLIGHADTLVIAQATEQFNGLSVVVTPDTRTALRL---------EKALMQFSK 67

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGS 286
                 P +  P  +T      S ++ I   R SA   L + N  I +  +S  +  +  
Sbjct: 68  L-----PVSVFPDWETLPYDNFSPHQDIISARLSALFHLQKGNKQIFLLPISTLLQKVCP 122

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
               +  ++ +K GD    + L   L    Y+  +  +  G + V G  ++++P   E  
Sbjct: 123 PSYLANNVLLIKKGDRFSIQSLRLQLENAGYRAVEQVLEYGEYAVRGALLDLYPMGAES- 181

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ I  F   + + I  +  + +     +    PT +  +++ + + + +
Sbjct: 182 PFRLDFFDDEIDSIRTFDADSQRTIAEINEMNLLPAHEF----PTDSNGIEHFRSKFREQ 237

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             E+ +     E + + Q+++              IE +          E   +LF+Y+ 
Sbjct: 238 FGEIRR-----EPEHIYQQVSK-------GILNAGIEYWQPLFF-----EEMASLFDYLA 280

Query: 467 EDS-LLFVDESHVTIPQIS 484
           E++  +  D       Q  
Sbjct: 281 ENTLFITFDGIAEKAEQFH 299



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 69/179 (38%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  +  +      + I++   Q +D+   + I     +G
Sbjct: 757 ILTLTATPIPRTLNMALNSMRDLSVIAS-PPARRLTIKTFVRQHDDLIVKEAILREILRG 815

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+    L E     R +  H +++  E   ++ D    +F++LV   
Sbjct: 816 GQVYYLHNDVATIENCATKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCST 875

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 876 IIETGIDVPTANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKALTK 930


>gi|307264008|ref|ZP_07545608.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306870619|gb|EFN02363.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 1149

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 120/319 (37%), Gaps = 38/319 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +  Q L  + G   T  +A+  E     ++V+ P+   A +L           A+  F  
Sbjct: 17  QDHQTLGNLIGHADTLVIAQATEQFNGLSVVVTPDTRTALRL---------EKALMQFSK 67

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGS 286
                 P +  P  +T      S ++ I   R SA   L + N  I +  +S  +  +  
Sbjct: 68  L-----PVSVFPDWETLPYDNFSPHQDIISARLSALFHLQKGNKQIFLLPISTLLQKVCP 122

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
               +  ++ +K GD    + L   L    Y+  +  +  G + V G  ++++P   E  
Sbjct: 123 PSYLANNVLLIKKGDRFSIQSLRLQLENAGYRAVEQVLEYGEYAVRGALLDLYPMGAES- 181

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ I  F   + + I  +  + +     +    PT +  +++ + + + +
Sbjct: 182 PFRLDFFDDEIDSIRTFDADSQRTIAEINEMNLLPAHEF----PTDSNGIEHFRSKFREQ 237

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             E+ +     E + + Q+++              IE +          E   +LF+Y+ 
Sbjct: 238 FGEIRR-----EPEHIYQQVSK-------GILNAGIEYWQPLFF-----EEMASLFDYLA 280

Query: 467 EDS-LLFVDESHVTIPQIS 484
           E++  +  D       Q  
Sbjct: 281 ENTLFITFDGIAEKAEQFH 299



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 69/179 (38%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  +  +      + I++   Q +D+   + I     +G
Sbjct: 757 ILTLTATPIPRTLNMALNGMRDLSVIAS-PPARRLTIKTFVRQHDDLIVKEAILREILRG 815

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+    L E     R +  H +++  E   ++ D    +F++LV   
Sbjct: 816 GQVYYLHNDVATIENCATKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCST 875

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 876 IIETGIDVPTANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKALTK 930


>gi|254720434|ref|ZP_05182245.1| transcription-repair coupling factor [Brucella sp. 83/13]
 gi|265985454|ref|ZP_06098189.1| transcription-repair coupling factor [Brucella sp. 83/13]
 gi|306838989|ref|ZP_07471810.1| transcription-repair coupling factor [Brucella sp. NF 2653]
 gi|264664046|gb|EEZ34307.1| transcription-repair coupling factor [Brucella sp. 83/13]
 gi|306405895|gb|EFM62153.1| transcription-repair coupling factor [Brucella sp. NF 2653]
          Length = 1171

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 76/537 (14%), Positives = 176/537 (32%), Gaps = 79/537 (14%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPNKI 204
           +   G +P+AIA      +++ +  ++ GV    + F +A+++E +    P + +  +  
Sbjct: 4   FSKLGLKPSAIA------NNKGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQ 57

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYY-DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
             A L        P   V +  ++    Y   +             S    + +  H A 
Sbjct: 58  RIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCALKKAPHPA- 116

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                    I+ ++ + +  +    +  + ++  + G+ ++  +L + L +  ++R    
Sbjct: 117 --------VILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTV 168

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G + V G  ++++    E+   R+  FG+ +E I  F P + +     +   +   S
Sbjct: 169 RDIGEYAVRGGILDLYAPGAEE-PLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMS 227

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
                   ++            R   +   G         QR     + +        +E
Sbjct: 228 EITLSSDMISRF----------RKNYVAMFGAP-------QRDDALYQAISEGRRFAGME 270

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           ++              T+F++      + V   H+    ++  +                
Sbjct: 271 HWLPLFYDNLE-----TVFDH---AGPMPVVFDHLVHEALTERHTMVVDHYEARLRQAEG 322

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD------- 556
             +  D  P +      ++P  + +  TP   E E  +   +   + P G  +       
Sbjct: 323 KEAGSDAVPYKP-----VKPEMLYL--TPDQVE-EAAEAAGLRIDLTPFGAPEVSGRTII 374

Query: 557 --------PPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                      E R+A      E V   I      G ++L+   T    + L + L E  
Sbjct: 375 HADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTDGSLDRLCQVLDEHG 434

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +       +++T++R+  ++ L   K    V   +L          LV + + D  G
Sbjct: 435 LE------KIETVDRLSTVKALSRDK----VTAAVLAVESGFDAGDLVVVAEQDILG 481



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 776  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPLVIRETLLRERYR 834

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       D+ E+L E    ++V   H ++      +I+     G++DVL+  
Sbjct: 835  GGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 894

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 895  TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 947

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 948  -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 988

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 989  QSGHIKEVGFELYQQMLEEA 1008


>gi|33152114|ref|NP_873467.1| transcription repair coupling factor [Haemophilus ducreyi 35000HP]
 gi|33148336|gb|AAP95856.1| transcription repair coupling factor [Haemophilus ducreyi 35000HP]
          Length = 1160

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 116/330 (35%), Gaps = 39/330 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +  Q L  + G   T  +A+         +V+  +   A +L    + F           
Sbjct: 24  QDHQTLGNLIGDADTLIIAQAATQFNGCTLVVTTDIRTALRLEKSLRQF----------- 72

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGS 286
                 P A  P  +T      S +++I   R SA   L + +   +++   + +  +  
Sbjct: 73  ---SQLPVAVFPDWETLPYDNFSPHQEIISARLSALFHLRQTKQQILLLPVNTLLQKLCP 129

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
               +  ++ +K GD      L   L    Y+  +  +  G + V G   +++P     +
Sbjct: 130 PSYLANNVLLIKKGDRFSIDSLRLQLENAGYRAVEQVLEYGEYAVRGALFDLYPMGTS-L 188

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ +  F   T + I  +E I +     +    PT    +++ + + +  
Sbjct: 189 PFRLDFFDDEIDSLRTFDVDTQRTISEIEQINLLPAHEF----PTDQQGIEHFRTKFREV 244

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             E+ +     E + + Q+++              IE +              +LF+Y+ 
Sbjct: 245 FGEIRR-----EPEHIYQQVSK-------GILNGGIEYWQPLFFQEM-----ASLFDYLS 287

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
            ++L           + +  Y+    R  +
Sbjct: 288 PNTLFIT--YAGINDKATQFYQETTQRYQS 315



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 68/179 (37%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  I  +      + I++   Q +D    + I     +G
Sbjct: 764 ILTLTATPIPRTLNMALNGMRDLSIIAS-PPSRRLTIKTFVCQQDDTIIKEAILREILRG 822

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+    L E     R +  H +++  +   ++ D    +F++LV   
Sbjct: 823 GQVYYLHNDVATIENCATKLAELVPEARIVIGHGQMRERDLERVMSDFYHQRFNLLVCST 882

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  G+D+P    + I  A+K G  +    L Q  GR  R+ +           K++  
Sbjct: 883 IIETGIDVPTANTIIIEQANKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKTLTK 937


>gi|187931883|ref|YP_001891868.1| transcription-repair coupling factor [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712792|gb|ACD31089.1| transcription-repair coupling factor [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 1141

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/447 (16%), Positives = 154/447 (34%), Gaps = 56/447 (12%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE--YFV 226
              ++    GS  +    + ++   +  +++  +   A ++Y E K    +N+     F 
Sbjct: 9   NDTVVSNAYGSAFSILFNEYLKQNNQFNLIVIEDSQQAHKIYKELKYLNKNNSKVDILFF 68

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
              +    + +    D      S   E + +M H    +L      I+ S  + +  I  
Sbjct: 69  PNLEILPYDRFSASIDII----SRRQEILYKMTHQPQNTL------IITSISNTLRKIAP 118

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                +    LK GD+++  +    L +  Y   +    +G F + G  I+I+P     V
Sbjct: 119 ASFIQEHSFILKTGDNLDITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPI-GSKV 177

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
           A+R+ +F N+I+ I E    + +    +++I I  +   V        A           
Sbjct: 178 AFRIDLFDNEIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFA----------- 226

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
              L+K  +L   + L   I      ++       IE Y          +   +L++Y+P
Sbjct: 227 ---LDKLNKLCGDKALNSTIA---TYIQNNEYFSGIEFYLPLFY-----DKLSSLYDYLP 275

Query: 467 EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
             + + + ++      I         R          L    D   L F          I
Sbjct: 276 PSTNIHLVDN--ITNSIEAFSDEVKFRYNE-------LKHDSDRPILPF--------QEI 318

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPP--VEIRSARTQVEDVYDEINLAAQQGL- 583
             S        +Q + I   Q  +    +     +E  SA  ++ + + ++     +   
Sbjct: 319 FYSQQEIQDIYQQYKNIKWFQQPKSKSKILKVDHLEKISANYKLANPFKDLQQFIDKSNF 378

Query: 584 -RILLTVLTKRMAEDLTEYLYERNIRV 609
            +++ +  +   AE L E+L + N+ +
Sbjct: 379 DKVIFSTDSNGRAELLLEHLNKLNLNI 405



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 92/265 (34%), Gaps = 26/265 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +  I    P   +     ++     +  + + ++    +
Sbjct: 748 ILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDNNI--IREAVSRETIR 805

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +I          ++  E L E      I +   H ++   E  +++ D +  K+ +L+
Sbjct: 806 GGQIFYLYNKVETIQKKKEILQELFPRLRIAIA--HGQMSEKEIQKVMFDFKHNKYHILL 863

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I DA+  G  +    L Q  GR  R+ +            SI
Sbjct: 864 CTTIIETGIDIPNANTLIIEDANNLGLAQ----LHQLRGRVGRSHHQAYAYMLIPNEASI 919

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
               D   R        +        +   +I    + +  E +     +ID   L+L  
Sbjct: 920 TK--DALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQSG----NIDGIGLNLYM 973

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEE 782
                 + +LR     A   LN EE
Sbjct: 974 DLLDKTIANLR-----AGKELNIEE 993



 Score = 44.3 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 135 SKDITFFQMQTDYHPSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKTFT---MAKVIE 190
            ++   F     Y  + DQ +AI  + K  I ++   +L+ G  G GKT      A +  
Sbjct: 584 EEEYLRFCADFPYEETPDQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLAT 643

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
             Q+   ++ P  ILA Q Y+ FK+ F + AV
Sbjct: 644 QNQKQVAILVPTTILAQQHYNSFKDRFTNTAV 675


>gi|27379712|ref|NP_771241.1| transcription-repair coupling factor [Bradyrhizobium japonicum USDA
           110]
 gi|27352864|dbj|BAC49866.1| transcription-repair coupling factor [Bradyrhizobium japonicum USDA
           110]
          Length = 1172

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 78/461 (16%), Positives = 148/461 (32%), Gaps = 77/461 (16%)

Query: 180 GKTFTMAKVIE----------------AMQRPAI---VMAPNKILAAQLYSEFKNFFPHN 220
           G+  T+A V E                  ++PA+   V+  +     QL    + F P  
Sbjct: 15  GRALTLANVAEGAEGLVISDLARAIAARPKKPAVSLAVVCRDGARMQQLERALQFFAPDL 74

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL----ERNDCIVVS 276
            V  F             P  D       S +  I   R +    L          IV++
Sbjct: 75  PVLTF-------------PAWDCQPYDRVSPHGGILAQRLTTLARLAPLTGSDKPLIVLT 121

Query: 277 SVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +V+ I   + + E  +   + +  G+ V    +++ L    Y R       G + V G  
Sbjct: 122 TVNAIVQRVPARELVAAQALSVAPGNVVPMDTIIAWLEHNGYNRSSTVREPGEYAVRGGI 181

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +++FP+ L D   R   FG+ +E I  F   T + + ++ ++ +   S +     T+   
Sbjct: 182 LDLFPAGL-DQPVRFDFFGDSLESIRSFDAETQRTLLDMRSLDLVPVSEFQLVTDTIRRF 240

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
                     R+  + + G         +R     E +        +E++      R   
Sbjct: 241 ----------RMGYVAEFGAP-------ERDDALYEAVSEGRRHPGMEHWLPLFQDRM-- 281

Query: 456 EPPPTLFEYIPEDSLLFV-----DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
               TLF+Y+ + +++ +     D       QI   Y+                P   D 
Sbjct: 282 ---DTLFDYL-QGAVIAIEPQAEDAVRERFKQILDYYQARREAMEHPGGGAIYKPLPPDR 337

Query: 511 RPLRFEEWNCLRPTTIVVSAT----PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
                EEW        +V  T    P         G    +   P    D  V +     
Sbjct: 338 LYFTEEEWTRRLGDVPLVRLTQFSVPADGTGVVDAGARKGRDFAP-ERNDTTVNVF---- 392

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
             E V   +     Q  ++++T+ ++   + +T  L +  +
Sbjct: 393 --ESVVSHVMALQAQRKKVVITLWSEGSRDRMTSMLRDHKL 431



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 12/188 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  +  VD    +R+     + +   + +     +
Sbjct: 772 HVLTLSATPIPRTLQLALTGVRELSIIASPPVDRLA-VRTFVAPHDPLMIREALLRERYR 830

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ ++L +    ++V   H ++      +I+     GKFD+L+  
Sbjct: 831 GGQAFYVVPRIDDLAEVKDFLDKNVPEMKVAVAHGQMPPAVIEDIMTAFYDGKFDILLST 890

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK+  YA     + Q 
Sbjct: 891 TIVESGLDIPNANTLIVHRADMFGLAQ----LYQLRGRVGR---SKLRAYALFTLPAQQK 943

Query: 700 AIDETTRR 707
              +  RR
Sbjct: 944 ITTQAERR 951



 Score = 38.5 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 53/177 (29%), Gaps = 12/177 (6%)

Query: 72  TASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQS-DNPLLKNGKIWTPHRSWS 130
                E  S+     +  +   +           L   I+   + L+K       H +  
Sbjct: 545 PVENIELLSRYGSDQTTVELDRLGGSGWQTRKAKLKNRIREIADELIKIAAARHLHEAPK 604

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MA 186
           +         F  +  Y  + DQ  AI   LK +       +L+ G  G GKT      A
Sbjct: 605 LPVQPGLYDEFCARFPYDETEDQLGAIESTLKDLELGRPMDRLICGDVGFGKTEVALRAA 664

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243
             +    +   V+ P  +LA Q    F   F    V       +  Q    +P  + 
Sbjct: 665 FAVALEGKQVAVVVPTTLLARQHARTFTERFKGFPV-------NVAQASRLIPTKEL 714


>gi|146340719|ref|YP_001205767.1| transcription repair coupling factor [Bradyrhizobium sp. ORS278]
 gi|146193525|emb|CAL77541.1| transcription repair coupling factor [Bradyrhizobium sp. ORS278]
          Length = 1172

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 118/362 (32%), Gaps = 51/362 (14%)

Query: 185 MAKVIEAMQRP----AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           +A+ I A  +P      V+  +     QL      F P   V  F             P 
Sbjct: 36  LARAIAARPKPPAVSLAVVCRDGNRMQQLARALDFFAPDLPVMQF-------------PA 82

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLL----ERNDCIVVSSVSCI-YGIGSVESYSQMIV 295
            D       S +  I   R +    L          IV+++V+ I   + S ++ +   +
Sbjct: 83  WDCQPYDRVSPHGGILAQRVTTLARLSRLAGSDKPLIVLTTVNAIVQRVPSRDTMAGQAL 142

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +  G  V    +++ L    Y R       G + V G  +++FP+ L D   R   FG+
Sbjct: 143 SVAPGHVVPMDSVVAWLEHNGYVRASTVRESGEYAVRGGILDLFPAGL-DQPVRFDYFGD 201

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
            +E I  F   T + + ++ ++ +   S +     T+             R+  + + G 
Sbjct: 202 SLESIRTFDAETQRTLLDMRSLDLVPVSEFQLVTDTIRRF----------RMGYVAEFGA 251

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV-- 473
                   +R     E +        +E++      +       TLF+Y+P ++ + +  
Sbjct: 252 P-------ERDDALYEAVSEGRRYPGMEHWLPLFHDKME-----TLFDYLP-NTPIVIEP 298

Query: 474 ---DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
              D +     QI   Y                 P  +D   L   EW        +   
Sbjct: 299 QGEDAARERFKQIIDYYDARREAMEHPGGGAIYKPLTVDRLYLTSTEWADRLAAVPLARV 358

Query: 531 TP 532
           TP
Sbjct: 359 TP 360



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 74/188 (39%), Gaps = 12/188 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  +  VD    +R+     + V   + +     +
Sbjct: 772 HVLTLSATPIPRTLQLALTGVRELSIIASPPVDRLA-VRTFVAPHDPVMIREALLRERYR 830

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ E+L +    ++V   H ++      +II     GKFD+L+  
Sbjct: 831 GGQAFYVVPRIDDLAEVKEFLDKTVPEMKVAVAHGQMAPTVIEDIISAFYDGKFDILLST 890

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK+  YA     S   
Sbjct: 891 TIVESGLDIPRANTLIVHRADMFGLAQ----LYQLRGRVGR---SKLRAYALFTLPSTHK 943

Query: 700 AIDETTRR 707
              +  +R
Sbjct: 944 VSAQAEKR 951


>gi|171743238|ref|ZP_02919045.1| hypothetical protein BIFDEN_02367 [Bifidobacterium dentium ATCC
           27678]
 gi|283455784|ref|YP_003360348.1| transcription-repair coupling factor [Bifidobacterium dentium Bd1]
 gi|171278852|gb|EDT46513.1| hypothetical protein BIFDEN_02367 [Bifidobacterium dentium ATCC
           27678]
 gi|283102418|gb|ADB09524.1| Transcription-repair coupling factor [Bifidobacterium dentium Bd1]
          Length = 1173

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 90/248 (36%), Gaps = 31/248 (12%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            +  G+    +  L  G  GS              RP +++  +   A +     ++++ 
Sbjct: 36  SITVGVPEGLRPALAAGAAGS--------------RPVVLVVASGREAEETVEAIRSWYG 81

Query: 219 HNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
            +  +      ++    E   PR DT   + +       R++H    + +     I+V  
Sbjct: 82  GDPQDVAQLEAWETLPHERLSPRADTVASRMAVF----RRLKHPEEGNAMFGPIRILVMP 137

Query: 278 VSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           V  +      G+G +E           G+ +   E    LV+  Y R D+ + RG F V 
Sbjct: 138 VRSLIQPVVAGLGDIEPLV-----FTQGEELALDEASKRLVESAYTRVDLVMDRGEFAVR 192

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIKIYANSHYVTPRPT 391
           G  I++FP  L     R+  FG++I+ I +F+    +     +E++              
Sbjct: 193 GGIIDVFPPTL-PHPVRIEFFGDEIDAIKQFHASDQRTYGEPLESVWATPCRELQLTDAV 251

Query: 392 LNTAMKYI 399
            + A   I
Sbjct: 252 RDRAKSLI 259



 Score = 40.8 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 774 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQITAAVRRELLRG 832

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +    +   +++          H ++   +   +IRD      DVLV   
Sbjct: 833 GQVFYVHNRVQDIASVAAKIHDLVPEAHVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCTT 892

Query: 641 LLREGLDIPECGLVAILDADKEGFLR 666
           ++  GLDI     + +  AD+ G  +
Sbjct: 893 IIETGLDISNANTLIVDHADRFGLSQ 918


>gi|294083797|ref|YP_003550554.1| transcription-repair coupling factor [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663369|gb|ADE38470.1| transcription-repair coupling factor [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 1158

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/341 (15%), Positives = 115/341 (33%), Gaps = 34/341 (9%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           +  I+  E    L G         +A + EA     + +A +    A +        P  
Sbjct: 1   MNFINKIELNSSLWGCPDGAHMLAVAALAEAKG-QILFVARDDARLALMRDALARLAPSL 59

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
            +  F ++ D    +   P+     ++  ++       R ++  + L  N  ++ +  + 
Sbjct: 60  DILVFPAW-DCLPYDRLSPQGALVGQRIETLA------RLASEPAALTANTIVLTTVNAF 112

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           +  +     +++  + + +G ++E   L + LV   Y R D     G F V G  +++FP
Sbjct: 113 LQRVPPQSYFAESSLHITVGQTIEPSALATFLVNNAYLRTDTVRETGEFAVRGGIVDVFP 172

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
               +   R+  FG+DIE +  F P   + I   + + ++  + +     T+        
Sbjct: 173 PGHAN-PVRLDFFGDDIETMRSFDPSNQRSIGKADRLTLHPVAEFRLNSQTVERF----- 226

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
                R   L   G       L + ++ +            IE++               
Sbjct: 227 -----RTSYLATFGATASRDALYESVSAER-------MHPGIEHWLPLFHTEMVR----- 269

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
           L +Y P D  + +D  H         +          A+ G
Sbjct: 270 LTDYCP-DWPIILD--HEAQAACVVRFEQIADFYEARADSG 307



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 5/147 (3%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + +SATP    L+     + E  +  T  VD    +R+     +   + + I     +
Sbjct: 761 HVLTLSATPIPRTLQMALSGVREMSLIATPPVDRLA-VRTFVGPWDGVVLREAILREMFR 819

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +I +        + + + + +     R +  H  +   E  +++     G+ D+L+  
Sbjct: 820 GGQIFVVCPRIDDLQRVYDRVRKLVPDARILSAHGRMPAAELDDVMTKFADGEADILLST 879

Query: 640 NLLREGLDIPECGLVAILDADKEGFLR 666
           N++  G+DIP    + I  AD  G  +
Sbjct: 880 NIIESGIDIPSANTMIIHRADMFGLSQ 906


>gi|308235054|ref|ZP_07665791.1| transcription-repair coupling factor [Gardnerella vaginalis ATCC
           14018]
 gi|311114598|ref|YP_003985819.1| transcription-repair coupling factor [Gardnerella vaginalis ATCC
           14019]
 gi|310946092|gb|ADP38796.1| transcription-repair coupling factor [Gardnerella vaginalis ATCC
           14019]
          Length = 1200

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 77/476 (16%), Positives = 159/476 (33%), Gaps = 59/476 (12%)

Query: 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           D+  A   L+  +        +    GS     +A  I     P +++ P+   A+   S
Sbjct: 34  DKNEAFKSLVSNVLDFPNPLTVASPLGSRPA--IAAAISKSS-PVVLITPSGRDASDAVS 90

Query: 212 EFKNFFPHNAVEYF-VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT--RSLLE 268
             ++++  +  +   +  ++    E   PR DT   + S       R++H  +    +  
Sbjct: 91  SIRDWYDGDPQDIAELEAWETLPHERLSPRADTVASRMSVF----RRLKHPQSGKNRMFS 146

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
               +V+   S I  +  VE+ S +     + G  V     +  LV+  Y R ++ + RG
Sbjct: 147 PIRVLVMPVRSIIQPV--VENISDVEPLVFECGKEVPIDSAVKRLVENSYNRVELVMNRG 204

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIKIYANSHYV 386
            F V G  I++F   + +   R+  FG++I+ I +F+    +     + +I   A     
Sbjct: 205 EFAVRGGIIDVFSPTM-NHPVRIEFFGDEIDTIKQFHASDQRTYGENINSIWATACRELQ 263

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
             +   N A   I +                      Q     LE +      + +E+  
Sbjct: 264 LTKDIQNRAKSLIGK---------------------IQNADDMLESISNAIPVEGMESLL 302

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH-----RKATLAEYG 501
             L  +   EP   L    P++S++ + +          + R              +  G
Sbjct: 303 PALVDKM--EPVENLL---PKNSIILISDPEKCRRAAQDLSRTANEFLAASWHVAASGRG 357

Query: 502 FRLPSCMD-NRPLRFEE----WNCLRPTTIVVS-----ATPGSWELEQCQGIIVEQIIRP 551
              P   D    L F+E            I ++      +P + ++++     + +  R 
Sbjct: 358 AGAPITFDQASFLDFDETLASLENKNHQVINLTSFGSDKSPATVDIKESSENKIVKNSRL 417

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
              +  P E R      E +   I+     G ++ +          L+  +    I
Sbjct: 418 ELSIKSPQEFR---GDNEKISSGISGLIANGFKVYIIASAYGTLSRLSRAIQSTGI 470



 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 64/180 (35%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 806 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVAACVKRELLRG 864

Query: 583 LRILLTVLTKRMAEDLTEYLYER-----NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            ++          ED+++          + RV   H ++   +   IIRD      DVLV
Sbjct: 865 GQVFYV---HNRVEDISKIASNIQKLVPDARVAIAHGKMGEKQLDTIIRDFWHRDIDVLV 921

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    TK +
Sbjct: 922 CTTIIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPTKPM 977


>gi|86138342|ref|ZP_01056916.1| transcription-repair coupling factor [Roseobacter sp. MED193]
 gi|85824867|gb|EAQ45068.1| transcription-repair coupling factor [Roseobacter sp. MED193]
          Length = 1153

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 115/335 (34%), Gaps = 34/335 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           ++   + G         +   +E    P + +A +      + S    F P   V  F  
Sbjct: 3   QRAITMGGAPEGFDARLILNELEKSGEPVLHIARDDKRMEAMRSALAFFAPDMPVIIFPG 62

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
           + D    +   P  D    + + +   + +M          +   ++ +  +    + + 
Sbjct: 63  W-DCLPYDRVSPNADVAAARMACLAALVHQM---------PKQFVLLTTLNAASQRVPTR 112

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
               Q     ++   V++K L   LV+  + +    +  G + + G  I+IFP   +   
Sbjct: 113 AVLRQAAFSARVDQRVDEKALREFLVRMGFVQSPTVMEPGDYAIRGGIIDIFPP-GDTGP 171

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG+ ++ I  F P + +    ++ I++   S  +     +    +  + E     
Sbjct: 172 VRLDFFGDVLDGIRRFDPASQRTTETLDLIELAPVSEVILDEAAITRFRQNYRIE----- 226

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                 G                E +      Q IE++  +       E   TLF+Y+P+
Sbjct: 227 --FGAAGTD----------DPLYEAVSAGRKHQGIEHWLPFFH-----EKLETLFDYLPK 269

Query: 468 DSLLFVDE-SHVTIPQISGMYRGDFHRKATLAEYG 501
            ++   D+ +   + +   +      RK  +++ G
Sbjct: 270 ATVTIDDQVTPARLARWDSIEDQYETRKIAMSQKG 304



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 74/187 (39%), Gaps = 9/187 (4%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 745 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA-IRTYVSEFDAVTLREALLREHYR 803

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++  +L E+   + Y+  H ++   E  + +     GK+DVL+  
Sbjct: 804 GGQSFYVVPRISDLPEIEAFLKEQLPELTYVVAHGQMAPGELDDRMNAFYDGKYDVLLAT 863

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+             + +  
Sbjct: 864 TIVESGLDIPTANTMVVHRADMFGLSQ----LYQIRGRVGRSKTRAYAYLTTKPRQRLTP 919

Query: 700 AIDETTR 706
           A ++  R
Sbjct: 920 AAEKRLR 926



 Score = 40.8 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 13/112 (11%)

Query: 110 IQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK 169
           I ++  L +   +  P      +   +    F     Y  + DQ  AI +++  + S + 
Sbjct: 566 IAAERALRRAPAMDPP-----PHAWEEFSARF----PYQETDDQLRAIQEVMADLTSGQP 616

Query: 170 -VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             +L+ G  G GKT      A V         V+AP  +LA Q  + F   F
Sbjct: 617 MDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVVAPTTLLARQHAASFAERF 668


>gi|307246259|ref|ZP_07528340.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307255243|ref|ZP_07537058.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259678|ref|ZP_07541401.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306852868|gb|EFM85092.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306861792|gb|EFM93771.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866218|gb|EFM98083.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 1149

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 119/319 (37%), Gaps = 38/319 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +  Q L  + G   T  +A+  E     ++V+ P+   A +L           A+  F  
Sbjct: 17  QDHQTLGNLIGHADTLVIAQATEQFNGLSVVVTPDTRTALRL---------EKALMQFSK 67

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGS 286
                 P +  P  +T      S ++ I   R SA   L + N  I +  +S  +  +  
Sbjct: 68  L-----PVSVFPDWETLPYDNFSPHQDIISARLSALFHLQQGNKQIFLLPISTLLQKVCP 122

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
               +  ++ +K GD    + L   L    Y+  +  +  G + V G  ++++P   E  
Sbjct: 123 PSYLANNVLLIKKGDRFSIQSLRLQLENAGYRAVEQVLEYGEYAVRGALLDLYPMGAES- 181

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ I  F   + + I  +  I +     +    PT +  +++ + + + +
Sbjct: 182 PFRLDFFDDEIDSIRTFDADSQRTIAEINEINLLPAHEF----PTDSNGIEHFRSKFREQ 237

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             E+ +     E + + Q+++              IE +              +LF+Y+ 
Sbjct: 238 FGEIRR-----EPEHIYQQVSK-------GILNAGIEYWQPLFFDEM-----ASLFDYLA 280

Query: 467 EDS-LLFVDESHVTIPQIS 484
           E++  +  D       Q  
Sbjct: 281 ENTLFITFDGISEKAEQFH 299



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 69/179 (38%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  +  +      + I++   Q +D+   + I     +G
Sbjct: 757 ILTLTATPIPRTLNMALNGMRDLSVIAS-PPARRLTIKTFVRQHDDLIVKEAILREILRG 815

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+    L E     R +  H +++  E   ++ D    +F++LV   
Sbjct: 816 GQVYYLHNDVATIENCATKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCST 875

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 876 IIETGIDVPTANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKALTK 930


>gi|307706692|ref|ZP_07643498.1| uvrABC system protein B [Streptococcus mitis SK321]
 gi|307617936|gb|EFN97097.1| uvrABC system protein B [Streptococcus mitis SK321]
          Length = 107

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 71/108 (65%), Gaps = 3/108 (2%)

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           +YADT+T+S+Q AIDET RRR+ Q+ +N++H I PQ++K++I ++I    +  A      
Sbjct: 1   MYADTVTQSMQHAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLI---AVTKAVAKEEK 57

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
            +    +L+K++ K  +K L KQM  A + L+FE AA+IRD +  +K+
Sbjct: 58  KEVDINNLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA 105


>gi|294853624|ref|ZP_06794296.1| transcription-repair coupling factor [Brucella sp. NVSL 07-0026]
 gi|294819279|gb|EFG36279.1| transcription-repair coupling factor [Brucella sp. NVSL 07-0026]
          Length = 1170

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 77/537 (14%), Positives = 175/537 (32%), Gaps = 80/537 (14%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPNKI 204
           +   G +P AIA        + +  ++ GV    + F +A+++E +    P + +  +  
Sbjct: 4   FSKLGLKPGAIAN-------KGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQ 56

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYY-DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
             A L        P   V +  ++    Y   +             S    + +  H A 
Sbjct: 57  RIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCALKKAPHPA- 115

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                    I+ ++ + +  +    +  + ++  + G+ ++  +L + L +  ++R    
Sbjct: 116 --------VILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAAGLERNGFERVSTV 167

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G + V G  ++++    E+   R+  FG+ +E I  F P + +     +   +   S
Sbjct: 168 RDIGEYAVRGGILDLYAPGAEE-PLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMS 226

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
                   ++            R   +   G         QR     + +        +E
Sbjct: 227 EITLSSDMISRF----------RKNYVAMFGAP-------QRDDALYQAISEGRRFAGME 269

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           ++              T+F++      + V   H+    ++  +                
Sbjct: 270 HWLPLFYDNLE-----TVFDH---AGPMPVVFDHLVHEALTERHTMVVDHYEARLRQAEG 321

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD------- 556
             +  D  P +      ++P  + +  TPG  E E  +   +   + P G  +       
Sbjct: 322 KEAGSDAVPYKP-----VKPEMLYL--TPGQVE-EAAEAAGLRIDLTPFGAPEVSGRTII 373

Query: 557 --------PPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                      E R+A      E V   I      G ++L+   T+   + L + L E  
Sbjct: 374 HADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEGSLDRLCQVLDEHG 433

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +       +++T++R+  ++ L   K    V   +L          LV + + D  G
Sbjct: 434 LE------KIETVDRLSTVKALSRDK----VTAAVLAVESGFDAGDLVVVAEQDILG 480



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 775  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPLVIRETLLRERYR 833

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       D+ E+L E    ++V   H ++      +I+     G++DVL+  
Sbjct: 834  GGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 893

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 894  TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 946

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 947  -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 987

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 988  QSGHIKEVGFELYQQMLEEA 1007


>gi|241204639|ref|YP_002975735.1| transcription-repair coupling factor [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858529|gb|ACS56196.1| transcription-repair coupling factor [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 1166

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 80/505 (15%), Positives = 151/505 (29%), Gaps = 95/505 (18%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
               P   +  +    A L        P   V               +P  D       S
Sbjct: 36  RTGEPVAYVMSDGHRMADLEQMLSFVAPDIPVLT-------------LPAWDCLPYDRVS 82

Query: 251 INEQIDRMRHSATRSLLERND-----CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
            +      R +A   L+          ++V++ + +  +   +    +    + G+ +  
Sbjct: 83  PSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQKVAPQDVIESLSFSARPGNQLRM 142

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
            +L   L +  ++R       G + V G  +++F    E+   R+  FG+ +E I  F P
Sbjct: 143 DDLAGRLERNGFERVATVREVGEYAVRGGILDVFVPGSEE-PVRLDFFGDTLESIRSFDP 201

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
            + + I  V  + +   S       T++            R   L   G       L   
Sbjct: 202 ASQRTIGQVRALDLNPMSEVTLTPDTISRF----------RKNYLSAFGATTRDDALYLA 251

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
           ++              +E++          E   T+F+Y+     + +D         + 
Sbjct: 252 VS-------EGRRYPGMEHWLPLFY-----EKLDTVFDYL-SGFRIVID--------HTV 290

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC----- 540
               +   K     Y  RL S     P +      +   T     TPG   L+       
Sbjct: 291 REAAEERSKLVFDYYDARLNSGQ---PSK-----GMTQGTPYKPVTPGQLYLDSKLFVKT 342

Query: 541 ----QGIIVEQIIRPTGLVDPPVEIRSARTQ------------------VEDVYDEINLA 578
                 I +       G     V + + + Q                   + V   I   
Sbjct: 343 LDALGAIRISPFNEHEGEARRVVNVDARQGQRWARSNAEGGGDAERINIFDVVVKHIADR 402

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
              G ++L+T  T+   E L + L E  +       +VK +E ++ +  L  G+    V 
Sbjct: 403 RAAGAKVLVTAWTEGSLERLLQVLNEHGLE------KVKPIEALKDVGSLARGEAAAAVL 456

Query: 639 INLLREGLDIPECGLVAILDADKEG 663
              L  G +  +  LV I + D  G
Sbjct: 457 S--LEAGFEAGD--LVVIGEQDILG 477



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 101/281 (35%), Gaps = 48/281 (17%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
              + +SATP    L+     + E  +  T  VD       I    + V  + + +     
Sbjct: 772  HVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLV--IRETLMREHY 829

Query: 581  QGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +G +           ED+  +L      ++V   H ++   E  +I+     G++DVL+ 
Sbjct: 830  RGGQSFYVCPRLADLEDVHAFLQSDLPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLS 889

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  GLD+P    + +  AD  G  +    L Q  GR  R+      L+   + K   
Sbjct: 890  TTIVESGLDVPTANTLIVHRADMFGLAQ----LYQLRGRVGRSKVRAFALFTLPVNK--- 942

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
              +  T  RR K                  +++ +D +       ++        +L  +
Sbjct: 943  -VLTATAERRLK------------------VLQSLDTLGAGFQLASHDLDIRGAGNLLGE 983

Query: 759  KGKAHLK----SLRKQMHLAADNLNFEEA-ARIR--DEIKR 792
            +   H+K     L +QM         EEA A ++  DEI  
Sbjct: 984  EQSGHIKEVGFELYQQML--------EEAVAEVKGVDEIHD 1016


>gi|83953596|ref|ZP_00962317.1| transcription-repair coupling factor [Sulfitobacter sp. NAS-14.1]
 gi|83841541|gb|EAP80710.1| transcription-repair coupling factor [Sulfitobacter sp. NAS-14.1]
          Length = 1162

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/325 (15%), Positives = 109/325 (33%), Gaps = 41/325 (12%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           S +    L GV        +   +     P + +A +    A + +  + F P   V  F
Sbjct: 2   SEKSQITLSGVPEGFDAQAVLNELGKNGTPVLHIARDDKRMAAMQAALRFFAPDVPVVVF 61

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER---NDCIVVSSVSCIY 282
                        P  D       S N  I   R +    L+        ++ +  +   
Sbjct: 62  -------------PGWDCLPYDRVSPNADISAQRMATLAGLVHGMPDRFILLTTLNAATQ 108

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            + + +         ++GD +++  L   LV+  + +       G + + G  I+IFP  
Sbjct: 109 RVPARDVLRDAAFSARVGDRIDEAALRGFLVRMGFVQSPTVTEPGDYAIRGGIIDIFPP- 167

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            +    R+ +FG+ ++    F P+T +    +E +++   S  +     +    +  + E
Sbjct: 168 GDLGPVRLDLFGDTLDGARRFDPVTQRTTEKLELVELAPVSEVILDESAITRFRQNYRIE 227

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
                      G                E +      Q  E++  +       E   TLF
Sbjct: 228 -------FGAAGTD----------DPLYEAISAGRKHQGAEHWMSFFH-----ETLETLF 265

Query: 463 EYIPEDSLLFVDESHVTIPQISGMY 487
           +Y+P  + + +D+  +T  ++S   
Sbjct: 266 DYVPR-ATITLDD-QLTAQRLSRWE 288



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 12/188 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 754 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA-IRTYVSEFDAVTLREALLREHYR 812

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++  +L E+   + Y+  H ++   E  + +     GK+D+L+  
Sbjct: 813 GGQSFYVVPRITDLPEIEAFLKEQLPELTYLVAHGQMAAGELDDRMNAFYDGKYDILLAT 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK   YA   TK    
Sbjct: 873 TIVESGLDIPTANTMIVHRADMFGLAQ----LYQIRGRVGR---SKTRAYAYLTTKPRAK 925

Query: 700 AIDETTRR 707
                 +R
Sbjct: 926 LTATAEKR 933


>gi|254459943|ref|ZP_05073359.1| transcription-repair coupling factor [Rhodobacterales bacterium
           HTCC2083]
 gi|206676532|gb|EDZ41019.1| transcription-repair coupling factor [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 1150

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 105/308 (34%), Gaps = 39/308 (12%)

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
              + G         + + ++A   P   +A +      +    + F P   V  F    
Sbjct: 6   HMTVSGAPEGFDAQLILRELDASDGPVCHIARDDKRLVAMQDALRFFAPDMPVVVF---- 61

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL---LERNDCIVVSSVSCIYGIGS 286
                    P  D       S N  I   R +   +L   + +   ++ +  +    I +
Sbjct: 62  ---------PGWDCLPYDRVSPNADISAARMATLAALVHGMPKRFVLLTTLGAATQRIPA 112

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            +   +     ++G  V++K L + LV+  + +    +  G + V G  I+IFP   E  
Sbjct: 113 RKILREAAFSAQVGGRVDEKALRNFLVRMGFVQSPTVMEPGDYAVRGGIIDIFPP-GEQG 171

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +FG+ ++    F P T +    ++ I++   S  +     +    +  + E    
Sbjct: 172 PIRLDLFGDILDGARRFDPATQRTTEKLDLIELAPVSEVILDDEAITRFRQNYRIE---- 227

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
                  G                E +      Q +E++  +       E   TLF+Y+P
Sbjct: 228 ---FGAAGTD----------DPLYEAVSAGRKHQGVEHWMPFFH-----EELETLFDYLP 269

Query: 467 EDSLLFVD 474
           + S+   D
Sbjct: 270 KASITCDD 277



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 12/188 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 746 HVLTLTATPIPRTLQLSLSGVRDLSIIGTPPVDRLA-IRTYVSEFDAVTLREALLREHYR 804

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++  +L E+   + YM  H ++   E  + +     GK+DVL+  
Sbjct: 805 GGQSFYVVPRILDLPEIETFLKEQLPELSYMVAHGQMAAGELDDRMNAFYDGKYDVLLAT 864

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK   YA   TK    
Sbjct: 865 TIVESGLDIPTANTMIVHRADMFGLAQ----LYQIRGRVGR---SKTRAYAYLTTKPRTK 917

Query: 700 AIDETTRR 707
                 +R
Sbjct: 918 LTTTAEKR 925


>gi|306845910|ref|ZP_07478478.1| transcription-repair coupling factor [Brucella sp. BO1]
 gi|306273802|gb|EFM55640.1| transcription-repair coupling factor [Brucella sp. BO1]
          Length = 1170

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 76/537 (14%), Positives = 175/537 (32%), Gaps = 80/537 (14%)

Query: 147 YHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR--PAIVMAPNKI 204
           +   G +P AIA        + +  ++ GV    + F +A+++E +    P + +  +  
Sbjct: 4   FSKLGLKPGAIAN-------KGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQ 56

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYY-DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
             A L        P   V +  ++    Y   +             S    + +  H A 
Sbjct: 57  RIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCALKKAPHPA- 115

Query: 264 RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                    I+ ++ + +  +    +  + ++  + G+ ++  +L + L +  ++R    
Sbjct: 116 --------VILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTV 167

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G + V G  ++++    E+   R+  FG+ +E I  F P + +     +   +   S
Sbjct: 168 RDIGEYAVRGGILDLYAPGAEE-PLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMS 226

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
                   ++            R   +   G         QR     + +        +E
Sbjct: 227 EITLSSDMISRF----------RKNYVAMFGAP-------QRDDALYQAISEGRRFAGME 269

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR 503
           ++              T+F++      + V   H+    ++  +                
Sbjct: 270 HWLPLFYDNLE-----TVFDH---AGPMPVVFDHLVHEALTERHTMVVDHYEARLRQAEG 321

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD------- 556
             +  D  P +      ++P  + +  TPG  + E  +   +   + P G  +       
Sbjct: 322 KEAGSDAVPYKP-----VKPEMLYL--TPGQVD-EAAEAAGLRIDLTPFGAPEVSGRTII 373

Query: 557 --------PPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
                      E R+A      E V   I      G ++L+   T+   + L + L E  
Sbjct: 374 HADVHKGCSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEGSLDRLCQVLDEHG 433

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +       +++T++R+  ++ L   K    V   +L          LV + + D  G
Sbjct: 434 LE------KIETVDRLSTVKALSRDK----VTAAVLAVESGFDAGDLVVVAEQDILG 480



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 775  HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPLVIRETLLRERYR 833

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       D+ E+L E    ++V   H ++      +I+     G++DVL+  
Sbjct: 834  GGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 893

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 894  TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 946

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 947  -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 987

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 988  QSGHIKEVGFELYQQMLEEA 1007


>gi|261337278|ref|ZP_05965162.1| transcription-repair coupling factor [Bifidobacterium gallicum DSM
           20093]
 gi|270277644|gb|EFA23498.1| transcription-repair coupling factor [Bifidobacterium gallicum DSM
           20093]
          Length = 1205

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 120/348 (34%), Gaps = 40/348 (11%)

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV-SY 228
             +L+G     +   +A   E   +P +++ P+   A ++    ++++  ++    V   
Sbjct: 56  PSILVGAPNGIRPALVAATAER--KPVVMVVPSAREANEMAEAIRSYYDGDSNAVAVLDA 113

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
           ++    E   PR DT   +         R+ H      +     I+V  V  +       
Sbjct: 114 WETLPHERLSPRADTVANRMQVF----ARLCHPQPGDAMFGTIRILVMPVRSLIQPVVTG 169

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                 +  +IG+ +   + +++LV+  Y R ++ + RG F V G  +++FP        
Sbjct: 170 VGDIKPLVFRIGEQIALDDAVAALVRNAYTRVELVMDRGEFAVRGGILDVFPP-TAKHPV 228

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNV-ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
           R+  FG++I+ I  F+    +    V + I                 A   I        
Sbjct: 229 RIDFFGDEIDSIRAFHSADQRTYGEVIDRIWATPCRELQLTDAVRERAKSLI-------- 280

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                            RI    +ML++      +E     +        P  +   +P+
Sbjct: 281 ----------------GRIANADDMLQSIADGIPVEGMESLMPALVDDMEP--IVGMLPK 322

Query: 468 DSLLFVDES---HVTIPQISGMYRGDFHRKATLAE--YGFRLPSCMDN 510
           D+++ + +    H ++  +             +A   +G + P   D+
Sbjct: 323 DAVVMMCDPEKLHRSVDDLIKTANEFLATSWHVAASGHGAQAPISFDH 370



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 69/199 (34%), Gaps = 13/199 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 796 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAIRRELMRG 854

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          +   +++ E     R    H ++   +  ++I+D      DVLV   
Sbjct: 855 GQVFFLHNRVEDIDKTAQHVAELVPEARIGIAHGKMGRKQLDQVIQDFWHRDIDVLVTTT 914

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    TK +   
Sbjct: 915 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGHERAYAYFLYDPTKPM--- 967

Query: 701 IDETTRRREKQLEHNKKHN 719
             ET+  R   +  N    
Sbjct: 968 -TETSHERLVTIAQNTALG 985


>gi|312172099|emb|CBX80356.1| Transcription-repair-coupling factor [Erwinia amylovora ATCC
           BAA-2158]
          Length = 1148

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/312 (18%), Positives = 118/312 (37%), Gaps = 38/312 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + SR   Q  LG + G+      A++ E    P +++A +   A +L  E + F      
Sbjct: 9   LPSRAGDQRQLGQLIGAACAVECAEIAERHHGPVMLIAQDMQNALRLQDEIQQFTD---- 64

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                     QP   +   +T      S +++I   R S    L      I++  V+ + 
Sbjct: 65  ----------QPVMALADWETLPFDSFSPHQEIISSRLSTLYQLPTLASGILILPVNTLM 114

Query: 283 GIGSVESYSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                 ++     + ++ G  + + +L S L +  Y+  D  +  G F   G  ++++P 
Sbjct: 115 QRVCPHNFLHGHALMMQKGQKLSRDKLRSQLEQAGYRSVDQVMAHGEFATRGALLDLYPM 174

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E   +R+  F ++I+ +  F   + +    V  I +     +    PT   A++  + 
Sbjct: 175 GSE-RPYRIDFFDDEIDSLRLFDVDSQRTQEEVAAINLLPAHEF----PTDKNAIELFRS 229

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +             EA+ + Q+++              IE +        P +P   L
Sbjct: 230 QWRE------HFDVRREAEHIYQQVSK-------GTLPAGIEYWQPLF-FEQPLQP---L 272

Query: 462 FEYIPEDSLLFV 473
           F Y+P ++LL +
Sbjct: 273 FRYLPANTLLVI 284



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 68/177 (38%), Gaps = 9/177 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--YDEINLAAQQG 582
            + ++ATP    L      + +  I  T        +++   + +D+   + I     +G
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-VKTFVREYDDLAVREAILREVLRG 809

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E  T+ L E     R    H +++  E   ++ D    +F+VLV   
Sbjct: 810 GQVYYLYNDVENIEKATQRLSELVPEARVALGHGQMRERELERVMNDFHHQRFNVLVCTT 869

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++  G+DIP    + I  AD+ G  +    L Q  GR  R+ +           K++
Sbjct: 870 IIETGIDIPTANTIIIERADRFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|292487974|ref|YP_003530851.1| transcription-repair-coupling factor [Erwinia amylovora CFBP1430]
 gi|292899191|ref|YP_003538560.1| transcription-repair coupling factor (TrcF) [Erwinia amylovora ATCC
           49946]
 gi|291199039|emb|CBJ46150.1| transcription-repair coupling factor (TrcF) [Erwinia amylovora ATCC
           49946]
 gi|291553398|emb|CBA20443.1| Transcription-repair-coupling factor [Erwinia amylovora CFBP1430]
          Length = 1148

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/312 (18%), Positives = 118/312 (37%), Gaps = 38/312 (12%)

Query: 164 IHSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           + SR   Q  LG + G+      A++ E    P +++A +   A +L  E + F      
Sbjct: 9   LPSRAGDQRQLGQLIGAACAVECAEIAERHHGPVMLIAQDMQNALRLQDEIQQFTD---- 64

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY 282
                     QP   +   +T      S +++I   R S    L      I++  V+ + 
Sbjct: 65  ----------QPVMALADWETLPFDSFSPHQEIISSRLSTLYQLPTLASGILILPVNTLM 114

Query: 283 GIGSVESYSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
                 ++     + ++ G  + + +L S L +  Y+  D  +  G F   G  ++++P 
Sbjct: 115 QRVCPHNFLHGHALMMQKGQKLSRDKLRSQLEQAGYRSVDQVMAHGEFATRGALLDLYPM 174

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             E   +R+  F ++I+ +  F   + +    V  I +     +    PT   A++  + 
Sbjct: 175 GSE-RPYRIDFFDDEIDSLRLFDVDSQRTQEEVAAINLLPAHEF----PTDKNAIELFRS 229

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           + +             EA+ + Q+++              IE +        P +P   L
Sbjct: 230 QWRE------HFDVRREAEHIYQQVSK-------GTLPAGIEYWQPLF-FEQPLQP---L 272

Query: 462 FEYIPEDSLLFV 473
           F Y+P ++LL +
Sbjct: 273 FRYLPANTLLVI 284



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 68/177 (38%), Gaps = 9/177 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--YDEINLAAQQG 582
            + ++ATP    L      + +  I  T        +++   + +D+   + I     +G
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-VKTFVREYDDLAVREAILREVLRG 809

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E  T+ L E     R    H +++  E   ++ D    +F+VLV   
Sbjct: 810 GQVYYLYNDVENIEKATQRLSELVPEARVALGHGQMRERELERVMNDFHHQRFNVLVCTT 869

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++  G+DIP    + I  AD+ G  +    L Q  GR  R+ +           K++
Sbjct: 870 IIETGIDIPTANTIIIERADRFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 922


>gi|255037444|ref|YP_003088065.1| transcription-repair coupling factor [Dyadobacter fermentans DSM
           18053]
 gi|254950200|gb|ACT94900.1| transcription-repair coupling factor [Dyadobacter fermentans DSM
           18053]
          Length = 1115

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 95/264 (35%), Gaps = 28/264 (10%)

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
              + G+ GS      A V    + PA+ +  ++  AA   ++ +N      V ++ + Y
Sbjct: 32  HVQIKGLVGSLDAVIAAAVQHRKKTPALYILSDREEAAYFQNDLQNLLGATEVLFYPTSY 91

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV---VSSVSCIYGIGS 286
                   V   +               MR      L       V       +    + +
Sbjct: 92  KRPYHYEEVDNANVL-------------MRGEILNKLSAGRSTPVQIVTYPEALFEKVIN 138

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
             S       +K+G+ ++   L   L    ++  D     G F V G  +++F S   + 
Sbjct: 139 KRSLRANTFSVKVGEKLDPAFLTEFLNSYGFEITDFVFEAGQFSVRGGILDVF-SFANEH 197

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL---------NTAMK 397
            +R+ +FG+++E I  F P T   I +V+ I I  +        T          +TA+ 
Sbjct: 198 PFRIELFGDEVESIRSFDPDTQLSIESVKQINIVPDIQQKLSHETRDSFLSFFTDDTAIW 257

Query: 398 YIKEELKMRLIE--LEKEGRLLEA 419
           +   EL + +IE   E+  + LE 
Sbjct: 258 FKDAELTLEVIEKCFERAEKALEE 281



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 75/194 (38%), Gaps = 15/194 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L         +      P        E+ +     E + D I+   Q+
Sbjct: 711 VLTLTATPIPRTLHFSLMGARDLSVIATPPPNRQPVTTEVHTFSE--EFIRDAISFEVQR 768

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E +   +      VR    H +++  +  +++ +   G++D+LV  
Sbjct: 769 GGQVFFVHNRVNDIESIANIILRLVPDVRIGVAHGQMEGDKLEKVMMNFIEGEYDILVST 828

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           N++  G+DI     + I  A   G     + L Q  GR  R+ N K   Y  T + S   
Sbjct: 829 NIIESGIDIANANTIIINSAHMFGL----SDLHQMRGRVGRS-NRKAFCYLLTPSAS--- 880

Query: 700 AIDETTRRREKQLE 713
            +   +R+R + LE
Sbjct: 881 TLASDSRKRLQTLE 894


>gi|126729844|ref|ZP_01745657.1| transcription-repair coupling factor [Sagittula stellata E-37]
 gi|126709963|gb|EBA09016.1| transcription-repair coupling factor [Sagittula stellata E-37]
          Length = 1159

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 104/309 (33%), Gaps = 41/309 (13%)

Query: 171 QLLLGVTGSGK-TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
           Q+++G    G     +   +  +  P + +A +    A +      F P   V  F    
Sbjct: 4   QVIIGGAPEGFDARLVLGEVAKVGGPVVHIARDDKRLAAMRDALAFFAPDMPVVVF---- 59

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER---NDCIVVSSVSCIYGIGS 286
                    P  D       S N  I   R +    L         ++ +  + +  + +
Sbjct: 60  ---------PAWDCVPYDRVSPNADISAARMATLAGLAHGMPERFVLLTTLGAAMQRLPA 110

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            E   +     ++GD V+++ L + LV+  + +       G + + G  I+I+P   E  
Sbjct: 111 REVLREAAFTARVGDRVDEEALRAFLVRMGFSQAPTVTEPGDYAIRGGIIDIYPP-GEGG 169

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+  FG+ +E    F   + +    ++ +++   S  +     +    +  + E    
Sbjct: 170 PVRLDFFGDTLEGARRFDAASQRTTEKLDVVELAPVSEVILDEAAILRFRQNYRIE---- 225

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
                  G                E +        IE++  +   R       TLF+Y+P
Sbjct: 226 ---FGAAGTD----------DPLYEAVSAGRKHAGIEHWLPFFHDRLE-----TLFDYLP 267

Query: 467 EDSLLFVDE 475
             + + +D+
Sbjct: 268 -GAPVLMDD 275



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 10/188 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ + V   + +     +
Sbjct: 753 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRL-SIRTYVSEFDPVTVREALLREHYR 811

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +  + V       ++ E+L E+     Y+  H ++   +  E +     GK+DVLV  
Sbjct: 812 GGQSFIVVPKITDLPEIEEFLKEQVPECTYVVAHGQMAAGDLDERMNAFYDGKYDVLVAT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+  ++   Y  T  ++   
Sbjct: 872 TIVESGLDIPTANTMIVHRADMFGLSQ----LYQIRGRVGRS-KTRAYCYLTTKPRAKLT 926

Query: 700 AIDETTRR 707
           A  E   R
Sbjct: 927 ATAEKRLR 934



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 12/105 (11%)

Query: 117 LKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLG 175
           L+   +  P        +      F     Y  + DQ AAI  ++  + S +   +L+ G
Sbjct: 580 LRKAPMLDPP----PGAYESFAARF----PYSETDDQLAAIEDVMDDLQSGQPMDRLICG 631

Query: 176 VTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             G GKT      A V         V+AP  +LA Q Y  F   F
Sbjct: 632 DVGFGKTEVAMRAAFVAAMSGVQVAVIAPTTLLARQHYKSFAERF 676


>gi|300312329|ref|YP_003776421.1| transcription-repair ATP-dependent coupling factor [Herbaspirillum
           seropedicae SmR1]
 gi|300075114|gb|ADJ64513.1| transcription-repair ATP-dependent coupling factor (helicase
           superfamily II) protein [Herbaspirillum seropedicae
           SmR1]
          Length = 1145

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/397 (14%), Positives = 126/397 (31%), Gaps = 54/397 (13%)

Query: 223 EYFVSYYDYYQPEA-------YVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-CIV 274
           +  ++   ++QP          +P  +T      S ++ +   R +    +       ++
Sbjct: 55  QRLLAEIPWFQPSEGERLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLI 114

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           V + + +  +   +  +      K G+ +++ +L S L    Y      +  G + V G 
Sbjct: 115 VPATTALLRMAPPQFLAAYTFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGG 174

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I+IFP     + +R+ +FG+ IE I  F   T + +  V  +++     +         
Sbjct: 175 LIDIFPM-GSVLPYRLDLFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDE----- 228

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
                      RL    +   + E       I  D   +    +   IE Y         
Sbjct: 229 ---------ASRLAFRNRWREVFEGDPSRSAIYKD---IGNGIASAGIEYYLPLFF---- 272

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL---AEYGFRLPSCMDNR 511
            E   TLF+Y+P +++            I   +     R   L    E     P  +   
Sbjct: 273 -EETATLFQYLPANAMFATVGD--IEQAIKRFWSDTRSRWNFLHADRERPVLEPQAI--Y 327

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
               + +  L+P    V  T              +          P + +       + +
Sbjct: 328 LDDEDFFTLLKPHARWVLKT--------------DDAPSAISAPLPNIAVNRRAD--DPL 371

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
            +  +   +   R+L+   +    E L +Y  E ++ 
Sbjct: 372 VNLRSFLLKGAERVLICAESNGRRETLQQYFAEYDLH 408



 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 80/196 (40%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L    +G+    +I         ++      Q   + +      ++G 
Sbjct: 753 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRAEQESTIREACLRELKRGG 812

Query: 584 RILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T       L + L E  I V   H ++   +  +++RD    +F++L+  
Sbjct: 813 QVYFLHNEVETIANRKAALEQLLPEARIGVA--HGQMHERDLEKVMRDFVAQRFNILLCT 870

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +     YA  + + +Q 
Sbjct: 871 TIIETGIDVPTANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLVQDVQG 923

Query: 700 AIDETTRRRE--KQLE 713
              +  RR E  +Q+E
Sbjct: 924 LSKQAQRRLEAIQQME 939


>gi|307250599|ref|ZP_07532540.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306857340|gb|EFM89455.1| Transcription-repair-coupling factor [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 1149

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 118/319 (36%), Gaps = 38/319 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +  Q L  + G   T  +A+  E     ++V+ P+   A +L           A+  F  
Sbjct: 17  QDHQTLGNLIGHADTLVIAQATEQFNGLSVVVTPDTRTALRL---------EKALMQFSK 67

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-NDCIVVSSVSCIYGIGS 286
                 P +  P  +T      S ++ I   R SA   L +      ++   + +  +  
Sbjct: 68  L-----PVSVFPDWETLPYDNFSPHQDIISARLSALFHLQQGNKQIFLLPINTLLQKVCP 122

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
               +  ++ +K GD    + L   L    Y+  +  +  G + V G  ++++P   E  
Sbjct: 123 PSYLANNVLLIKKGDRFSIQSLRLQLENAGYRAVEQVLEYGEYAVRGALLDLYPMGAES- 181

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ I  F   + + I  +  + +     +    PT +  +++ + + + +
Sbjct: 182 PFRLDFFDDEIDSIRTFDADSQRTIAEINEMNLLPAHEF----PTDSNGVEHFRSKFREQ 237

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             E+ +     E + + Q+++              IE +          E   +LF+Y+ 
Sbjct: 238 FGEIRR-----EPEHIYQQVSK-------GILNAGIEYWQPLFF-----EEMASLFDYLA 280

Query: 467 EDS-LLFVDESHVTIPQIS 484
           E++  +  D       Q  
Sbjct: 281 ENTLFITFDGIAEKAEQFH 299



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 69/179 (38%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  +  +      + I++   Q +D+   + I     +G
Sbjct: 757 ILTLTATPIPRTLNMALNGMRDLSVIAS-PPARRLTIKTFVRQHDDLIVKEAILREILRG 815

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+    L E     R +  H +++  E   ++ D    +F++LV   
Sbjct: 816 GQVYYLHNDVATIENCATKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCST 875

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 876 IIETGIDVPTANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKALTK 930


>gi|238789093|ref|ZP_04632882.1| Transcription-repair-coupling factor [Yersinia frederiksenii ATCC
           33641]
 gi|238722857|gb|EEQ14508.1| Transcription-repair-coupling factor [Yersinia frederiksenii ATCC
           33641]
          Length = 1099

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 117/298 (39%), Gaps = 37/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE    P +++ P+   A +L  E + F                +P 
Sbjct: 22  LTGSACAVECAEIIERHDGPVMLITPDMQTALRLRDEIQQFSS--------------RPV 67

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
             +   +T      S ++ I   R S    L      +++  ++ +   +   E      
Sbjct: 68  NTLSDWETLPYDSFSPHQDIISARLSCLYQLPAMERGVIILPINTLMQRVCPHEFLHGHA 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K G  + + +L + L +  Y+  D  +  G F   G  ++++P   E+  +R+  F 
Sbjct: 128 LVMKKGQHLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEE-PYRIDFFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           +DI+ +  F   T + +  VE I +     +   +    TA++  + + + +        
Sbjct: 187 DDIDSLRVFDVDTQRTLSEVEQINLLPAHEFPIDK----TAIELFRSQWREQ-------- 234

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
              E +R  + I    + +        IE +          +P P+LF Y+PE++LL 
Sbjct: 235 --FEVRRDAEHI---YQQVSKGIWPAGIEYWQPLFFS----QPLPSLFSYLPENTLLI 283



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E  T+ L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKATQRLAELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 922


>gi|165976764|ref|YP_001652357.1| transcription repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876865|gb|ABY69913.1| transcription repair coupling factor [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 1149

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 120/319 (37%), Gaps = 38/319 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +  Q L  + G   T  +A+  E     ++V+ P+   A +L           A+  F  
Sbjct: 17  QDHQTLGNLIGHADTLVIAQATEQFNGLSVVVTPDTRTALRL---------EKALMQFSK 67

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGS 286
                 P +  P  +T      S ++ I   R SA   L + N  I +  +S  +  +  
Sbjct: 68  L-----PVSVFPDWETLPYDNFSPHQDIISARLSALFHLQKGNKQIFLLPISTLLQKVCP 122

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
               +  ++ +K GD    + L   L    Y+  +  +  G + V G  ++++P   E  
Sbjct: 123 PSYLANNVLLIKKGDRFSIQSLRLQLENAGYRAVEQVLEYGEYAVRGALLDLYPMGAES- 181

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ I  F   + + I  +  + +     +    PT +  +++ + + + +
Sbjct: 182 PFRLDFFDDEIDSIRTFDADSQRTIAEINEMNLLPAHEF----PTDSNGVEHFRSKFREQ 237

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             E+ +     E + + Q+++              IE +          E   +LF+Y+ 
Sbjct: 238 FGEIRR-----EPEHIYQQVSK-------GILNAGIEYWQPLFF-----EEMASLFDYLA 280

Query: 467 EDS-LLFVDESHVTIPQIS 484
           E++  +  D       Q  
Sbjct: 281 ENTLFITFDGIAEKAEQFH 299



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 69/179 (38%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  +  +      + I++   Q +D+   + I     +G
Sbjct: 757 ILTLTATPIPRTLNMALNGMRDLSVIAS-PPARRLTIKTFVRQHDDLIVKEAILREILRG 815

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+    L E     R +  H +++  E   ++ D    +F++LV   
Sbjct: 816 GQVYYLHNDVATIENCATKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCST 875

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 876 IIETGIDVPTANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKALTK 930


>gi|268589233|ref|ZP_06123454.1| transcription-repair coupling factor [Providencia rettgeri DSM
           1131]
 gi|291315491|gb|EFE55944.1| transcription-repair coupling factor [Providencia rettgeri DSM
           1131]
          Length = 1147

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 116/322 (36%), Gaps = 40/322 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+       ++I+  Q P I++  +   A +L  E + F  H              P 
Sbjct: 22  LIGAAGALECGEIIQRHQGPVIIVTRDMQNALRLRDEIQQFTQH--------------PI 67

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
             +   +T      S +++I   R S    L   +   +++   + +  +   +  +   
Sbjct: 68  ETLSDWETLPYDNFSPHQEIISHRLSTLYRLPSLQKGALILPVNTLMQKVCPADFLTSHA 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +  GD + +  L + L    Y+  +  +  G +   G  +++FP     + +R+  F 
Sbjct: 128 LVMAKGDKLSRDNLRNELDNAGYRHVEQVLEHGEYATRGALLDLFPMGSS-LPFRIDFFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ +  F   + + +  VE I +     + T +     A++  + + + R        
Sbjct: 187 DEIDSLRTFDVDSQRTLEEVEQINLLPAHEFPTDKD----AIERFRSQWRERFEVRRDP- 241

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                + + Q+++ +            IE +          +P P+LFEY+P  SL+   
Sbjct: 242 -----EHIYQQVSKNT-------LPTGIEYWQPLF----FAQPLPSLFEYLPPSSLIV-- 283

Query: 475 ESHVTIPQISGMYRGDFHRKAT 496
            S                R  +
Sbjct: 284 -SQSLQEAAERFQVDTQQRYES 304



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 67/177 (37%), Gaps = 9/177 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  I  T        +++   Q +D+   + I     +G
Sbjct: 750 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA-VKTFVRQYDDLVVREAILRETLRG 808

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E     L E     R++  H +++  E   ++ D    +F+VL+   
Sbjct: 809 GQVYYLYNDVENIEKAKTRLEELVPEARFVVGHGQMRERELERVMTDFHHQRFNVLICTT 868

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 IIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPHPKAM 921


>gi|238795991|ref|ZP_04639503.1| Transcription-repair-coupling factor [Yersinia mollaretii ATCC
           43969]
 gi|238720196|gb|EEQ12000.1| Transcription-repair-coupling factor [Yersinia mollaretii ATCC
           43969]
          Length = 1148

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 113/298 (37%), Gaps = 37/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE  + P +++ P+   A +L  E + F                 P 
Sbjct: 22  LTGSACAVECAEIIERHKGPVMLITPDMQTALRLRDEIQQFSSW--------------PV 67

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
             +   +T      S ++ I   R S    L   +  +++  ++ +   +   E      
Sbjct: 68  NTLSDWETLPYDSFSPHQDIISARLSCLYQLPAMDRGVIILPINTLMQRVCPHEFLHGHA 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K G  + + +L + L +  Y+  D  +  G F   G  ++++P   E+  +R+  F 
Sbjct: 128 LVMKKGQHLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEE-PYRIDFFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           +DI+ +  F   T + +  VE I +     +   +     A++  + + + +        
Sbjct: 187 DDIDSLRVFDVDTQRTLSEVEQINLLPAHEFPIDK----AAIELFRSQWREQFDVRRDA- 241

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
                        +  + +        IE +          +P P+LF Y+PE++LL 
Sbjct: 242 ------------EHIYQQVSKGIWPAGIEYWQPLFFS----QPLPSLFSYLPENTLLV 283



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  + + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--IREAILREILR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E  T+ L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKATQRLAELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 922


>gi|213157165|ref|YP_002319210.1| transcription-repair coupling factor [Acinetobacter baumannii
           AB0057]
 gi|213056325|gb|ACJ41227.1| transcription-repair coupling factor [Acinetobacter baumannii
           AB0057]
          Length = 1153

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/465 (13%), Positives = 148/465 (31%), Gaps = 65/465 (13%)

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
           ++        +++A N    AQL SE + +     +      ++    +   P  D   E
Sbjct: 36  EIATQHSSLLVLVARNNQHVAQLESELEFYGVKPTI---FPDWEILPYDRLSPHQDIVSE 92

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           + + ++              + +   +++S+ +    +            +K+G   + +
Sbjct: 93  RLAILSN-------------IPKQGVLLISASTLAQRVAPYSWVLGEHFDIKVGQKFDLE 139

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +    LV+  Y   D     G F V G  ++IF +  ++   R+ +F ++I+ +  F P 
Sbjct: 140 QQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIF-ASGQESPIRIDLFDDEIDSLKFFDPE 198

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           T +    +++  +     +                  + R  E        +        
Sbjct: 199 TQRTTTTLKSFTVLPAKEFPFKEGRSV---------FRDRYSEFFPTANPKK-------- 241

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV-----DESHVTIP 481
               + +    +   IE Y      +   +       Y+P++ ++        +      
Sbjct: 242 NPIYQDVLDGIASPGIEFYLPLFFDKEQMQTQSMFTTYLPKNCIVITTNDIDTDLTNFWK 301

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           ++   Y    H           L    ++      ++  +     +VSA      +E+  
Sbjct: 302 EVMRRYEDRRHNMDQPILAPEELFISPNHLLSALNQFPRM-----LVSA----ETIEEKA 352

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G +  +  +P  L   P + +     V+   DE N        +LL   +    E L + 
Sbjct: 353 GALNLKTEQPPKLPVDPKKEKPFSA-VKKYIDEANHP------VLLVAESAGRRESLKDA 405

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L           S +  +  +E     ++ +F + +    L  GL
Sbjct: 406 LR----------SSLGEIPNVENFEQFQISQFAIAITNAPLDRGL 440



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 15/195 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+          + + I     +G 
Sbjct: 756 MLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQENTDASIKEAILRELLRGG 815

Query: 584 RILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T  R AE++   + E  + V   H +++  E  ++++     +++VLV  
Sbjct: 816 QVYFLHNEVETIERAAENIRVLVPEARVAVA--HGQMRERELEQVMQQFYHKEYNVLVCS 873

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +  SI+ 
Sbjct: 874 TIIETGIDVPNANTILIERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVPSIKH 926

Query: 700 AIDETTRRR-EKQLE 713
              +  +R    Q  
Sbjct: 927 LKGDAEKRLDAIQRA 941


>gi|158312659|ref|YP_001505167.1| transcription-repair coupling factor [Frankia sp. EAN1pec]
 gi|158108064|gb|ABW10261.1| transcription-repair coupling factor [Frankia sp. EAN1pec]
          Length = 1188

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 80/489 (16%), Positives = 142/489 (29%), Gaps = 75/489 (15%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            + +      A  L     +      V  + S+ +    E   PR DT   + +     +
Sbjct: 55  VLAVTATGREAEDLADAVGSLLGSERVAVYPSW-ETLPHERLSPRADTVGRRLAV----L 109

Query: 256 DRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
            R+ H  T          +VV+ V  +             V L  GD+ + +++ + LV 
Sbjct: 110 RRLAHPGTGGATGAGPLAVVVAPVRSVLQPQVARLGELAPVALAKGDTADLEDVTARLVG 169

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI--- 371
             Y R D+   RG   V G  +++FP   E+   R+  FG+++++I  F     + +   
Sbjct: 170 IAYHRVDLVERRGEMAVRGGILDVFPP-TEEHPLRIEFFGDEVDDIRRFSVADQRALPAE 228

Query: 372 --RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD 429
                  +        +        A      EL     +L                   
Sbjct: 229 DGEPAAELFAPPCRELLLTDEVRARA-----AELAREHPQLVDM---------------- 267

Query: 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGM 486
           L+ +      + +E  +  LT          L + +P  S + V +         ++   
Sbjct: 268 LDKIAEGIPVEGMEALAPVLTDEMTL-----LLDELPAGSRVLVCDPERVRTRAGELVRT 322

Query: 487 YRGDFHRKATLAEYGFRLP---------SCMDNRPLRFEE---WNCLRPTTIVVSATPGS 534
            +       ++A  G   P         S  D R    E    W  + P      A    
Sbjct: 323 SQEFLDASWSVAALGGGAPIDLGAATYRSVADVRERAAELGIPWWSVSPFASEPGAGAEG 382

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
              +      V   +RP                      +I        R+LL       
Sbjct: 383 EGGDTFGDDTVVASLRPATAY---------HGDTARATADIKGWLADSWRVLLVTEGHGP 433

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AE L E + E ++             R+    +L  G    +V    L  G   P   L 
Sbjct: 434 AERLVEMMREADLGA-----------RLAADAELAAGV--AVVTQAQLGAGFVSPTLRLA 480

Query: 655 AILDADKEG 663
            + + D  G
Sbjct: 481 VLTETDLAG 489



 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 50/150 (33%), Gaps = 13/150 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV-----EDVYDEINLA 578
            + +SATP    LE          IR    +D P E R    T V       V   I   
Sbjct: 786 VLTMSATPIPRTLEMSITG-----IRELSTIDTPPEERHPVLTSVAPYEPRQVTAAIRRE 840

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVL 636
             +  ++          +     L E     R    H ++      +++      KFDVL
Sbjct: 841 LLREGQVFFIHNRVESIDRAAAALRELVPEARIATAHGQMNEDALEQVMVSFWEKKFDVL 900

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLR 666
           V   ++  GLDI     + +  AD  G  +
Sbjct: 901 VCTTIVESGLDISNANTLIVERADNFGLSQ 930


>gi|227538907|ref|ZP_03968956.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241416|gb|EEI91431.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 1112

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 112/328 (34%), Gaps = 18/328 (5%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q      L K I ++     L G+ GS             +RP + + P    A+   S+
Sbjct: 12  QSGQTQALTKAIQAKNPKVQLKGLVGSSDAVVAVASYYLQERPYVFILPTHEEASYFLSD 71

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            ++      V +F S +                 +  + +        SA     E    
Sbjct: 72  LESLL-DKQVLFFPSSFRKAFD----------FTQLDAAHVLQRAETLSALNHASELPKM 120

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V    +    + + +   +  +++     +  + +   L +  ++R D     G F + 
Sbjct: 121 VVTYPEALAEKVINRQDLQKNTLEITQNSKLSIEFINEFLSEYDFERVDFVYEPGQFAIR 180

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++IF S   D  +R+  FG+DIE I  F       +  + T+ I  N          
Sbjct: 181 GGIVDIF-SFSNDKPYRIEFFGDDIESIRTFDIEDQLSVSKIHTVTIVPNVQAKFLSAQH 239

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            + ++YI ++  + + +++    +++     ++     + L      Q+ E  +   +  
Sbjct: 240 ISLLEYIDQDTVIWVKDIQFLTDIVKD--GFKKANQFWKALTEKEKTQNPEWINPEYSLS 297

Query: 453 NPGEPPPTLFEY----IPEDSLLFVDES 476
           +       L ++      +      D++
Sbjct: 298 DERNLAAMLHDFPIVEFGKQFFYKADQT 325



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDL 628
           + + ++    +G ++          + L   + +     RV   H +++  +  +++   
Sbjct: 757 IQEAVSYELDRGGQVFFIHNRVADLKQLGALIQKLVPGARVGVAHGQLEGDDLEDVMLKF 816

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              +FDVLV   ++  GLDIP    + I  A   G     + L Q  GR  R+ N K   
Sbjct: 817 ISHEFDVLVATTIIEAGLDIPNANTIMINHAHMFGL----SDLHQMRGRVGRS-NKKAFC 871

Query: 689 Y 689
           Y
Sbjct: 872 Y 872


>gi|326795840|ref|YP_004313660.1| transcription-repair coupling factor [Marinomonas mediterranea
           MMB-1]
 gi|326546604|gb|ADZ91824.1| transcription-repair coupling factor [Marinomonas mediterranea
           MMB-1]
          Length = 1136

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/483 (14%), Positives = 148/483 (30%), Gaps = 66/483 (13%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G+  +     + ++ +    P + +A        L         +       S ++    
Sbjct: 19  GIPSTLHAVQLLELSKTNSCPILFIANTVSELNDLEDALSFLIKNETEVLRFSEWETLPY 78

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQM 293
           +A+ P  D            I   R     +L +    I+++++ + +  +         
Sbjct: 79  DAFSPHQD------------IISQRLETLANLRDTKSSIILTTINAAMTRLCPASHIDSQ 126

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
              +K   SV  + L + L    Y   D     G F + G  +++FP    D   R+  F
Sbjct: 127 RFHVKTDQSVSTETLANRLTNGGYLNVDTVREHGEFSIRGALMDVFPM-GADAPIRIDWF 185

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
             +I+ I  F P T +    V+ +KI     + T +  +                     
Sbjct: 186 DTEIDSIRYFDPETQRSTEKVKEVKILPAKEFPTTQNGIQ-----------------FFR 228

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
            R  E   ++   +   + + +      IE Y          E    LF+Y+   + +  
Sbjct: 229 QRFRERFDVDPLSSPIYQDISSGLMPGGIEYYLPLFF-----EETDCLFDYLHSSTCIV- 282

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
                T+         D   +     Y    P               L P  + +  +  
Sbjct: 283 --RSKTVNDYIASSLLDIKSRHESLNYDLERP--------------ILTPKEVFLEDSEI 326

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ-QGLRILLTVLTK 592
             EL +    + ++    T  V   +   +  +++++  + ++   Q Q L IL+   + 
Sbjct: 327 FAELNKFAAAVFDE--EGTNDVFSTIPELTVNSKLDNPLESLSKFLQSQNLPILICAESA 384

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
              E L E L + N++  Y+             +     K    +   LL  G    E  
Sbjct: 385 GRREALIELLNKNNLKPEYIGD----------WQRFTDKKPTFAITEGLLTRGFIQNEAY 434

Query: 653 LVA 655
            V 
Sbjct: 435 AVI 437



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 78/201 (38%), Gaps = 16/201 (7%)

Query: 516 EEWNCLRPT--TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVED 570
           +++  LR     + ++ATP    L     GI    II   P   +     ++        
Sbjct: 733 DQFKALRAEIDVLTLTATPIPRTLNMSLSGIRDLSIIATPPAKRLSVKTFVKKKDDH--Q 790

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDL 628
           + + I     +G ++          +   E++ E     R +  H +++  E  +++ D 
Sbjct: 791 IKEAILRELHRGGQVYYLHNEVETIQKAAEFITELVPEARVIVGHGQMRERELEQVMSDF 850

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              + +VLV   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +     
Sbjct: 851 YHKRSNVLVCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQ---A 903

Query: 689 YADTITKSIQLAIDETTRRRE 709
           YA  +T   +    +  +R E
Sbjct: 904 YAYLLTPQDRKVTGDAEKRLE 924



 Score = 40.8 bits (94), Expect = 0.87,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 4/133 (3%)

Query: 95  SEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQP 154
           +E+      +A  +   +   LL+          ++ +        F     +  + DQ 
Sbjct: 540 TEKWSIAKQKAAEKARDTAAELLEIYAKREARSGYAFSKPDDQYALFSASFPFEETPDQQ 599

Query: 155 AAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLY 210
            AI  ++K + + +   +L+ G  G GKT      A +     +   V+ P  +LA Q Y
Sbjct: 600 MAIDAVIKDMSTGKPMDRLVCGDVGFGKTEVAMRAAFLAVQSGKQVAVLVPTTLLAQQHY 659

Query: 211 SEFKNFFPHNAVE 223
             F + F    V+
Sbjct: 660 ENFCDRFADWPVQ 672


>gi|189463579|ref|ZP_03012364.1| hypothetical protein BACCOP_04303 [Bacteroides coprocola DSM 17136]
 gi|189429682|gb|EDU98666.1| hypothetical protein BACCOP_04303 [Bacteroides coprocola DSM 17136]
          Length = 1123

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 95/258 (36%), Gaps = 18/258 (6%)

Query: 155 AAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
            A+  L   + + + +   L G   S  +   +  I+++    + +  ++  A   Y + 
Sbjct: 17  PALEGLANTLKNNDIRTVFLEGTHASCASLFASCFIKSVSGVYLFVLNDQEEAGYFYHDM 76

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
                   + +F S Y              Y +K+++     + +R      L +     
Sbjct: 77  VQVNGDEQILFFPSSYRRAIK---------YGQKDAAN----EILRTEVLSRLEKNEPVT 123

Query: 274 VVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           VV+    +   + S +  S   ++L +G  ++  E+  +L    ++  D     G F   
Sbjct: 124 VVTYPDALAEKVVSPKILSDRTLKLTVGQHIDTDEITKTLSDYGFEHVDYVYEPGQFATR 183

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  I+++ S   +  +RV  FG++I+ I  F   +       +++ I             
Sbjct: 184 GSIIDVY-SFASEYPYRVDFFGDEIDSIRTFEVESQLSREKKDSVSIVPELAQAMDGD-- 240

Query: 393 NTAMKYIKEELKMRLIEL 410
            + + +I  E  + + +L
Sbjct: 241 ISFLSFIPRETVLWVKDL 258



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+       P+  E+ +   ++  + + IN    +
Sbjct: 711 TLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNEEI--ITEAINFEMSR 768

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++       +   +L   +       R    H +++  E  +II       +DVL+  
Sbjct: 769 NGQVFFVNNRIQNLMELKAMIVRNIPDCRVCIGHGQMQPEELEKIIFGFVNYDYDVLLAT 828

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 829 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLSSLTP 884

Query: 700 AIDETTRRRE 709
              E  RR +
Sbjct: 885 ---EAKRRLQ 891


>gi|46447155|ref|YP_008520.1| transcription-repair coupling factor [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400796|emb|CAF24245.1| probable transcription-repair coupling factor mfd [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 1101

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 71/381 (18%), Positives = 137/381 (35%), Gaps = 45/381 (11%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
             I  L K +   + + L+  +  + K    A   +   +  +++  +    A+L+ +  
Sbjct: 12  ERILALQKALQHTKDILLIEELWNAPKALIAALAQQVTGKHVLILTGSSQEEARLFHDLS 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL--LERNDC 272
            F     V++              P  +T   +    +  I   R+   + +        
Sbjct: 72  FFTNCPTVDF--------------PSWETLPSENVPPSPDIVGERYQLLKKINSSSEPHI 117

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           I+ S  +C+  + +  ++ ++ + LK  +S    +L+  L    Y+R+ I   +G F V 
Sbjct: 118 ILTSLQACLQKLIAPSAFQKLYLTLKANESFFFDDLIQKLNLMGYQRKFIASDKGEFAVR 177

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  I++FP    D  +R+  +G+D+E I  + P+    +R VE I I           + 
Sbjct: 178 GGIIDVFPVSSPD-PYRLEFWGDDLESIRIYDPIGQISVRAVEQIDIAPGLELELLNQSN 236

Query: 393 NTAMKY---------IKEE---LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT-GSC 439
             A            I ++   L+ R   L   G   +     +   + L   +    S 
Sbjct: 237 EQASFLDYLGPETLIIFDDLLALEDRYASLISLGANNKFFSSIEEFLHLLTPYQKMFWSQ 296

Query: 440 QSIENYS--RYLTGRNPGEPPPTLFEY------IPEDSLL-FVDESHVTIPQ--ISGMYR 488
           + IE  S  ++L  +  G    T   +         D  +        TI    IS   +
Sbjct: 297 KPIEELSEVKHLDSKQSGYYSQTTIFHKLKFQMFNRDWTVKRWRHPFNTITNYFISQEEQ 356

Query: 489 GDFHRKATLAEYGFRLPSCMD 509
           GDF+    L    +RLPS   
Sbjct: 357 GDFNGDEIL----YRLPSLSH 373



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 15/189 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L        +  +    P   +     I     Q+  + + +     +
Sbjct: 733 CLTLSATPIPRTLYMSLIGARDMSVINTPPQDRLPTKTIITEPSDQI--IQNALLRELSR 790

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
             +  +          ++  +     + R +  H ++   E        + G+ D+LV  
Sbjct: 791 DGQAFVIHNRVESIYSVSNRIKSLLPQARVLVAHGQMHADEIDATFHAFKSGQADILVAT 850

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  AD  G      +L Q  GR  R        +     + +  
Sbjct: 851 TIVENGVDIPNANTILIDRADHFGL----AALYQLRGRVGRWNRRAYAYFLVPNLRVMP- 905

Query: 700 AIDETTRRR 708
              E TR+R
Sbjct: 906 ---ELTRKR 911


>gi|300770435|ref|ZP_07080314.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762911|gb|EFK59728.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 1112

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 87/250 (34%), Gaps = 12/250 (4%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q      L K I ++     L G+ GS             +RP + + P    A+   S+
Sbjct: 12  QSGQTQALTKAIQAKNPKVQLKGLVGSSDAVVAVASYYLQERPYVFILPTHEEASYFLSD 71

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
            ++      V +F S +                 +  + +        SA     E    
Sbjct: 72  LESLL-DKQVLFFPSSFRKAFD----------FTQLDAAHVLQRAETLSALNHASELPKM 120

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V    +    + + +   +  +++     +  + +   L +  ++R D     G F + 
Sbjct: 121 VVTYPEALAEKVINRQDLQKNTLEITQNSKLSIEFINEFLSEYDFERVDFVYEPGQFAIR 180

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  ++IF S   D  +R+  FG+DIE I  F       +  + T+ I  N          
Sbjct: 181 GGIVDIF-SFSNDKPYRIEFFGDDIESIRTFDIEDQLSVSKIHTVTIVPNVQAKFLSAQH 239

Query: 393 NTAMKYIKEE 402
            + ++YI ++
Sbjct: 240 ISLLEYIDQD 249



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDL 628
           + + ++    +G ++          + L   + +     RV   H +++  +  +++   
Sbjct: 757 IQEAVSYELDRGGQVFFIHNRVADLKQLGALIQKLVPGARVGVAHGQLEGDDLEDVMLKF 816

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              +FDVLV   ++  GLDIP    + I  A   G     + L Q  GR  R+ N K   
Sbjct: 817 ISHEFDVLVATTIIEAGLDIPNANTIMINHAHMFGL----SDLHQMRGRVGRS-NKKAFC 871

Query: 689 Y 689
           Y
Sbjct: 872 Y 872


>gi|83942375|ref|ZP_00954836.1| transcription-repair coupling factor [Sulfitobacter sp. EE-36]
 gi|83846468|gb|EAP84344.1| transcription-repair coupling factor [Sulfitobacter sp. EE-36]
          Length = 1162

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 109/325 (33%), Gaps = 41/325 (12%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225
           S +    L GV        +   +     P + +A +      + +  + F P   V  F
Sbjct: 2   SEKSQITLSGVPEGFDAQAVLNELGKSGTPVLHIARDDKRMVAMQAALRFFAPDVPVVVF 61

Query: 226 VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER---NDCIVVSSVSCIY 282
                        P  D       S N  I   R +    L+        ++ +  +   
Sbjct: 62  -------------PGWDCLPYDRVSPNADISAQRMATLAGLVHGMPDRFILLTTLNAATQ 108

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            + + +         ++GD +++  L   LV+  + +       G + + G  I+IFP  
Sbjct: 109 RVPARDVLRDAAFSARVGDRIDEAALRGFLVRMGFVQSPTVTEPGDYAIRGGIIDIFPP- 167

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            +    R+ +FG+ ++    F P+T +    +E +++   S  +     +    +  + E
Sbjct: 168 GDLGPVRLDLFGDTLDGARRFDPVTQRTTEKLELVELAPVSEVILDESAITRFRQNYRIE 227

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
                      G                E +      Q  E++  +       E   TLF
Sbjct: 228 -------FGAAGTD----------DPLYEAISAGRKHQGAEHWMSFFH-----ETLQTLF 265

Query: 463 EYIPEDSLLFVDESHVTIPQISGMY 487
           +Y+P+ + + +D+  +T  ++S   
Sbjct: 266 DYVPQ-ATITLDD-QLTAQRLSRWE 288



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 12/188 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 754 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA-IRTYVSEFDAVTLREALLREHYR 812

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++  +L E+   + Y+  H ++   E  + +     GK+D+L+  
Sbjct: 813 GGQSFYVVPRITDLPEIEAFLKEQLPELTYLVAHGQMAAGELDDRMNAFYDGKYDILLAT 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK   YA   TK    
Sbjct: 873 TIVESGLDIPTANTMIVHRADMFGLAQ----LYQIRGRVGR---SKTRAYAYLTTKPRAK 925

Query: 700 AIDETTRR 707
                 +R
Sbjct: 926 LTATAEKR 933


>gi|169796102|ref|YP_001713895.1| transcription-repair coupling protein [Acinetobacter baumannii AYE]
 gi|215483557|ref|YP_002325776.1| transcription-repair coupling factor [Acinetobacter baumannii
           AB307-0294]
 gi|301345057|ref|ZP_07225798.1| transcription-repair coupling factor [Acinetobacter baumannii
           AB056]
 gi|301510356|ref|ZP_07235593.1| transcription-repair coupling factor [Acinetobacter baumannii
           AB058]
 gi|301595346|ref|ZP_07240354.1| transcription-repair coupling factor [Acinetobacter baumannii
           AB059]
 gi|169149029|emb|CAM86906.1| transcription-repair coupling protein [Acinetobacter baumannii AYE]
 gi|213987269|gb|ACJ57568.1| transcription-repair coupling factor [Acinetobacter baumannii
           AB307-0294]
          Length = 1153

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/465 (13%), Positives = 148/465 (31%), Gaps = 65/465 (13%)

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
           ++        +++A N    AQL SE + +     +      ++    +   P  D   E
Sbjct: 36  EIATQHSSLLVLVARNNQHVAQLESELEFYGVKPTI---FPDWEILPYDRLSPHQDIVSE 92

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           + + ++              + +   +++S+ +    +            +K+G   + +
Sbjct: 93  RLAILSN-------------IPKQGVLLISASTLAQRVAPYSWVLGEHFDIKVGQKFDLE 139

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +    LV+  Y   D     G F V G  ++IF +  ++   R+ +F ++I+ +  F P 
Sbjct: 140 QQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIF-ASGQESPIRIDLFDDEIDSLKFFDPE 198

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           T +    +++  +     +                  + R  E        +        
Sbjct: 199 TQRTTTTLKSFTVLPAKEFPLKEGRSV---------FRDRYSEFFPTANPKK-------- 241

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV-----DESHVTIP 481
               + +    +   IE Y      +   +       Y+P++ ++        +      
Sbjct: 242 NPIYQDVLDGIASPGIEFYLPLFFDKEQMQTQSMFTTYLPKNCIVITTNDIDTDLTNFWK 301

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           ++   Y    H           L    ++      ++  +     +VSA      +E+  
Sbjct: 302 EVMRRYEDRRHNMDQPILAPEELFISPNHLLSALNQFPRM-----LVSA----ETIEEKA 352

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G +  +  +P  L   P + +     V+   DE N        +LL   +    E L + 
Sbjct: 353 GALNLKTEQPPKLPVDPKKEKPFSA-VKKYIDEANHP------VLLVAESAGRRESLKDA 405

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L           S +  +  +E     ++ +F + +    L  GL
Sbjct: 406 LR----------SSLGEIPNVENFEQFQISQFAIAITNAPLDRGL 440



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 15/195 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    II         V+          + + I     +G 
Sbjct: 756 MLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQENTDASIKEAILRELLRGG 815

Query: 584 RILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T  R AE++   + E  + V   H +++  E  ++++     +++VLV  
Sbjct: 816 QVYFLHNEVETIERAAENIRVLVPEARVAVA--HGQMRERELEQVMQQFYHKEYNVLVCS 873

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +  SI+ 
Sbjct: 874 TIIETGIDVPNANTILIERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVPSIKH 926

Query: 700 AIDETTRRR-EKQLE 713
              +  +R    Q  
Sbjct: 927 LKGDAEKRLDAIQRA 941


>gi|304319738|ref|YP_003853381.1| transcription-repair coupling factor [Parvularcula bermudensis
           HTCC2503]
 gi|303298641|gb|ADM08240.1| transcription-repair coupling factor [Parvularcula bermudensis
           HTCC2503]
          Length = 1163

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 80/455 (17%), Positives = 146/455 (32%), Gaps = 59/455 (12%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
               + G         +A+ +       + +A +   AA L      F P   +  F   
Sbjct: 20  GPLTVHGAPEGADALIIAQAVSQAGGLIVHIARDASRAAALAGSLAFFAPQVPIVRF--- 76

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN---DCIVVSSVSCI-YGI 284
                     P  D       S + +I   R +A  +L   N     ++V++V+ +   +
Sbjct: 77  ----------PAWDCLPYDRLSPSPEIVAARMAALSTLNAHNGKTPLVIVTTVNAMTQRV 126

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
            S    S      + G SV   EL+S L    Y R       G + V G  I++FP   +
Sbjct: 127 PSQALISTASFSARPGASVSMDELISFLTMNGYARASTVREPGDYAVRGGLIDLFPPGTD 186

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
           +   R+  FG+ +E I  F P T       + + + A S  +    T++           
Sbjct: 187 E-PLRLDFFGDTLETIRAFDPNTQMTTHQRQDVHLSAASEALLNDETISRFRSG------ 239

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
             L +    G                E +        +E++              T+F++
Sbjct: 240 -YLAQFGAPGD-----------DPVYEAVSAGRRQAGMEHWLPLFYDGLE-----TVFDH 282

Query: 465 IPEDSLLFVDE-----SHVTIPQISGMYRGDFHRKATLAEYGFRL------PSCMDNRPL 513
           +  D+L+FVD      +     QI+  Y           +    L      P   D   +
Sbjct: 283 LG-DALVFVDHLGDEAARERFDQIADYYETRREDMTAREDQKGGLDIVPYRPMPPDRLYI 341

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
              EW+     T +   TP S    +       +  RP          R+A   V +   
Sbjct: 342 TPAEWDAALTATRLRPLTPFSAPEGKRAFDFGAKKGRPFTAE------RAAGQNVFEAVA 395

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
               A ++  ++++   T   A+ L   L + ++ 
Sbjct: 396 AHIAAMRKSRKVIIAGWTAGSADRLKSVLADHDVD 430



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 70/181 (38%), Gaps = 9/181 (4%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ-- 580
              + ++ATP    L+     I +  +  T  VD    +R+     + V     L  +  
Sbjct: 765 THVLTLTATPIPRTLQLSMAGIRDLSLIATPPVDRLA-VRTTIGPFDPVVARETLLREHY 823

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G +    V      + + ++L  +   +++   H ++   E  +++     GKFDVL+ 
Sbjct: 824 RGGQSFYVVPRLSDIDTVADFLRHQVPEIKFEIGHGQMSATELEDVMNGFYDGKFDVLLA 883

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + +  AD  G  +    L Q  GR  R+          +  K + 
Sbjct: 884 TTIIESGIDVPTANTLVVHRADMFGLAQ----LYQIRGRVGRSKQRAYAYLTTSPRKKMT 939

Query: 699 L 699
            
Sbjct: 940 E 940


>gi|254468808|ref|ZP_05082214.1| transcription-repair coupling factor [beta proteobacterium KB13]
 gi|207087618|gb|EDZ64901.1| transcription-repair coupling factor [beta proteobacterium KB13]
          Length = 1120

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 78/453 (17%), Positives = 166/453 (36%), Gaps = 71/453 (15%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P ++   +  +AA+L  E   +F  N V   +  ++    ++  P  D        I+++
Sbjct: 32  PLVIFTKDSYVAARLQQEML-WFNQNLVVSMIPDWETLPYDSVSPHPDL-------ISDR 83

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           +  +     ++     D +++ + S +  +   +  +Q       G  V+ + L   L++
Sbjct: 84  LKSLFLVTQKAF----DILIIPATSALNHLPPKQYITQNSFFYSKGQKVDLESLKMVLIE 139

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y         G F V G  I++FP     + +R+  F  +IE I  F   T + I   
Sbjct: 140 NGYINVQKVFHPGEFAVRGGLIDLFPM-GSTIPYRIDFFDTEIESIKTFDVETQKSIYPT 198

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
             I+I          P    +++  ++  + R        +      +  +I +      
Sbjct: 199 NKIEILPARE----CPLTELSIETFRKNYRER--FSGDPSKSPIYTNISNKIPF------ 246

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
                  +E Y          +   T+F+Y+P+D+L+  D        I   +     R 
Sbjct: 247 -----AGMEWYLPLFY-----QETNTIFDYLPDDTLI--DVPFKLSSSIDHYWLDAQTR- 293

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
                  F++ +    RP        L P  I++ +     +L + + +  + I  P   
Sbjct: 294 -------FKMYAYDIERP-------ILNPEEIMMDSVKFHQDLNRFKNLNFDVIDNPL-- 337

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
             P + I   +   +++ D IN   ++   I+++  +    E + + L E ++       
Sbjct: 338 --PKITI-DYKDGYKNIADYINQCPKK---IIISAESLGRRETIHKMLTECDL------- 384

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
              +L+R E I  L     D L+  + L+EG  
Sbjct: 385 ---SLKRSESINILDP-VIDHLLIQSPLKEGFS 413



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 83/200 (41%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
            + ++ATP    L    +G+    II   P   +     ++S +   +++          
Sbjct: 728 FLALTATPIPRTLSMSLEGLRDFSIISTPPQKRLSIKTMVKSFSEGIIKEALTREFNRGG 787

Query: 581 QGLRILLTVLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q   +   V +   ++E LT+ + +  + +   H ++K  E   +++D    +F++L+  
Sbjct: 788 QAYFLHNDVSSIYAISEKLTKIMPDAKVAIA--HGQMKEKELERVMQDFHQQRFNLLLCT 845

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I +AD+ G  +    L Q  GR  R+ +           +S+  
Sbjct: 846 TIIETGIDIPTSNTIIINNADRFGLSQ----LHQLRGRVGRSHHQAFAYLLIDENRSLTS 901

Query: 700 AIDETTRRREKQLEHNKKHN 719
                 ++R + +++ +   
Sbjct: 902 ----KAKKRLEAIQYLEDLG 917



 Score = 38.9 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 146 DYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFTM--AKVIEAM-QRPAIVMAP 201
            +  + DQ  AI  ++K + S R   +L+ G  G GKT     A  I  M  R  I++ P
Sbjct: 575 PFEETPDQMLAIESVIKDMESARPMDRLICGDVGFGKTEVAMRAAFISIMNNRQVIILVP 634

Query: 202 NKILAAQLYSEFKNFFPHNAVE 223
             +LA+Q Y+ F + F    VE
Sbjct: 635 TTLLASQHYNNFVDRFSSFPVE 656


>gi|154253521|ref|YP_001414345.1| transcription-repair coupling factor [Parvibaculum lavamentivorans
           DS-1]
 gi|154157471|gb|ABS64688.1| transcription-repair coupling factor [Parvibaculum lavamentivorans
           DS-1]
          Length = 1171

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 83/236 (35%), Gaps = 30/236 (12%)

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERND-------CIVVSSVSCIYGIGSVESY 290
            P  D       S N +I   R +A   L+ R          ++ +  + +  + + ++ 
Sbjct: 72  FPAWDCLPYDRVSPNAEISARRMAALSRLVAREQKGEGKRLILLATVNAVLQRVPARDTV 131

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
                  + G+ ++  EL   L    Y R       G F V G  ++IFPS  E +  R+
Sbjct: 132 RTSAWSARTGNRIDLNELTGYLAANGYSRTGTVREAGEFAVRGGIVDIFPSGFE-LPVRL 190

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            MFG+ ++ I  F  +T + +  +  + +   S     +  +             R   +
Sbjct: 191 DMFGDTLDAIRSFDAVTQRTVGQLHGLDLVPASEVHLDKEAIRRF----------RAAYV 240

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
              G + +   L        E +        +E++          E   TLF+Y+P
Sbjct: 241 ATLGAVTDGDPL-------YEAVSEGRKHAGMEHWLPLFH-----EQLETLFDYVP 284



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 74/192 (38%), Gaps = 11/192 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--Q 581
             + ++ATP    L+     + E  +  T  VD    +R+  +  + V     L  +  +
Sbjct: 770 HVLTLTATPIPRTLQLALSGVRELSLIATPPVDRLA-VRTYVSPFDPVVVREALLREHFR 828

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       +  E+L +    V+++  H ++   E  + +     GK+DVLV  
Sbjct: 829 GGQSFYVVPRIADLAEAEEFLRQYVPEVKFVLAHGQMAAGEIEDKMTAFYDGKYDVLVST 888

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+             +++  
Sbjct: 889 TIVESGLDIPTANTLVVHRADMFGLSQ----LYQLRGRVGRSKARAYAYLTVPANRTLTA 944

Query: 700 AIDETTRRREKQ 711
             D   R R  Q
Sbjct: 945 GAD--KRLRVLQ 954


>gi|296123961|ref|YP_003631739.1| transcription-repair coupling factor [Planctomyces limnophilus DSM
           3776]
 gi|296016301|gb|ADG69540.1| transcription-repair coupling factor [Planctomyces limnophilus DSM
           3776]
          Length = 1103

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 95/247 (38%), Gaps = 17/247 (6%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P   Q   I  +L+ +        + G  GS    T A V  +   P I + P       
Sbjct: 12  PRLRQHPGIQAILESLRQG-NSGTVDGAWGSSCALTTACVATSTSGPVIAILPRARDIED 70

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE-QIDRMRHSATRSLL 267
              +  +F                QP    P  ++   ++S+ +    +R+R        
Sbjct: 71  FAGDLTSFLG--------------QPPLVFPAWESLPSEQSTSDPIHGERLRLLKQLESE 116

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
                ++ S  + +  + + +S  + + + ++GD +  +     L+   ++R      RG
Sbjct: 117 APPQLVLTSIAATLQPVPARQSRQKSMRRFRVGDELPLESTSEWLISLGFERVLSIETRG 176

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            F + G  ++++ + LE    R+ +FG++IE I  F   + +K+ ++  I++        
Sbjct: 177 EFSIHGGIVDLWTADLE-HPIRIELFGDEIESIRTFDVESQRKLADLNEIEVSVLDLRRL 235

Query: 388 PRPTLNT 394
           P+  + T
Sbjct: 236 PQEEMPT 242



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/203 (23%), Positives = 71/203 (34%), Gaps = 22/203 (10%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-VEIRSARTQVEDVY 572
           E    LR  T  + +SATP    L      + +     T   D   +E R  R     + 
Sbjct: 692 ERLKKLRTQTDILTLSATPIPRTLHLSLIGVRDISNLETPPQDRMAIETRICRFDPTLIR 751

Query: 573 DEINLAAQQGLRILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
             I     +G +I   V  +      MAE +   + E  + V  +H ++   E  E +  
Sbjct: 752 QAIVRELNRGGQI-YFVHNRVYNIQTMAERIRSIVPEAQVGV--VHGQMNEHEMEEAMLG 808

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G  DVLV   ++  GLDIP    + I  A+  G       + Q  GR  R  +    
Sbjct: 809 FVRGDLDVLVATTIIESGLDIPNANTIFINQAEHYGLAE----MHQLRGRVGRYKHRAYC 864

Query: 688 LYADTITKSIQ-------LAIDE 703
                  K +         AI+E
Sbjct: 865 YLMVEEGKILSPQATKRLKAIEE 887


>gi|169633480|ref|YP_001707216.1| transcription-repair coupling protein [Acinetobacter baumannii SDF]
 gi|169152272|emb|CAP01180.1| transcription-repair coupling protein [Acinetobacter baumannii]
          Length = 1153

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/465 (13%), Positives = 149/465 (32%), Gaps = 65/465 (13%)

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
           ++        +++A N    AQL SE + +     +      ++    +   P  D   E
Sbjct: 36  EIATQHSSLLVLVARNNQHVAQLESELEFYGVKPTI---FPDWEILPYDRLSPHQDIVSE 92

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           + + ++              + +   +++S+ +    +            +K+G   + +
Sbjct: 93  RLAILSN-------------MPQKGVLLISASTLAQRVAPYSWVLGEHFDIKVGQKFDLE 139

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +    LV+  Y   D     G F V G  ++IF +  ++   R+ +F ++I+ +  F P 
Sbjct: 140 QQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIF-ASGQESPIRIDLFDDEIDSLKFFDPE 198

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           T +    +++  +     +                  + R  E        +        
Sbjct: 199 TQRTTTTLKSFTVLPAKEFPLKEGRSV---------FRDRYSEFFPTANPKK-------- 241

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV-----DESHVTIP 481
               + +    +   IE Y      +   +      +Y+P++ ++        +      
Sbjct: 242 NPIYQDVLDGIASPGIEFYLPLFFDKEQMQTQSMFTKYLPKNCIVITTNDIDTDLTNFWK 301

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           ++   Y    H           L    ++      ++  +     +VSA      +E+  
Sbjct: 302 EVMRRYEDRRHNMDQPILAPEELFISPNHLLSALNQFPRM-----LVSA----ETIEEKA 352

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G +  +  +P  L   P + +     V+   DE N        +LL   +    E L + 
Sbjct: 353 GALNLKTEQPPKLPVDPKKEKPFSA-VKKYIDEANHP------VLLVAESAGRRESLKDA 405

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L           S +  +  +E     ++ +F + +    L  GL
Sbjct: 406 LR----------SSLGEIPNVENFEQFQISQFAIAITNAPLDRGL 440



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/308 (17%), Positives = 111/308 (36%), Gaps = 52/308 (16%)

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
             +  L+ VDE H    +     +        L      +P     R L    ++ +R  
Sbjct: 725 FKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIP-----RTLNMA-FSGMRDL 778

Query: 525 TIVVSATP-------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN- 576
           +I+  ATP        ++  E     I E I+R                QV  +++E+  
Sbjct: 779 SII--ATPPARRLAVKTFVQEHTDASIKEAILRELLR----------GGQVYFLHNEVET 826

Query: 577 -LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A + +R+L+                E  + V   H +++  E  ++++     +++V
Sbjct: 827 IERAAENIRVLV---------------PEARVAVA--HGQMRERELEQVMQQFYHKEYNV 869

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +  
Sbjct: 870 LVCSTIIETGIDVPNANTILIERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVP 922

Query: 696 SIQLAIDETTRRR-EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
           SI+    +  +R    Q            +   +I    + +  + + +      +  + 
Sbjct: 923 SIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELLGEQQSGSMQAIGYSLYME 982

Query: 755 LSKKKGKA 762
           + +K+ KA
Sbjct: 983 MLEKETKA 990



 Score = 39.3 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 88/232 (37%), Gaps = 32/232 (13%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q G ++ + V T    ++  E   +   +  +R+  +         
Sbjct: 638 GKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTH 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++ I DL  GK D++VG + LL+E +   + GL+ + +  + G    +        +A R
Sbjct: 698 LKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMVVDEEHRFGVRDKERI------KALR 751

Query: 681 NVNSKVILYADTITKSIQLA---------IDETTRRREKQLEHNKKHNINPQSVKEKIME 731
                + L A  I +++ +A         I     RR       ++H     S+KE I+ 
Sbjct: 752 ADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEH--TDASIKEAILR 809

Query: 732 VI----------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
            +          + +   + A  NI +   +  ++   G+   + L + M  
Sbjct: 810 ELLRGGQVYFLHNEVETIERAAENIRVLVPEARVAVAHGQMRERELEQVMQQ 861


>gi|126737697|ref|ZP_01753427.1| transcription-repair coupling factor [Roseobacter sp. SK209-2-6]
 gi|126721090|gb|EBA17794.1| transcription-repair coupling factor [Roseobacter sp. SK209-2-6]
          Length = 1158

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 48/338 (14%), Positives = 116/338 (34%), Gaps = 40/338 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +    + G         + K +E  ++P + +A +      + +    F P   +  F  
Sbjct: 8   QGSITMGGAPEGYDARLILKELETSKQPVLHIARDDKRMEAMRAALSFFAPDLPILVF-- 65

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL---LERNDCIVVSSVSCIYGI 284
                      P  D       S N  +   R +   +L   + +   ++ +       +
Sbjct: 66  -----------PGWDCLPYDRVSPNADVSAARMATLAALVHQMPKQFVLLTTLNGASQRV 114

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
            +     +   + ++   V+++ L   LV+  + +    +  G + + G  I+IFP   E
Sbjct: 115 PARSILKEAAFRARVDQRVDEEALRKFLVRMGFVQSPTVMEAGDYAIRGGIIDIFPP-GE 173

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
               R+  FG+ ++    F P++ +    ++ +++   S  +     +    +  + E  
Sbjct: 174 SGPVRLDFFGDILDGARRFDPVSQRTTEKLDLVELAPVSEVILDEAAITRFRQNYRIE-- 231

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                    G                E +      Q IE++  +       E   TLF+Y
Sbjct: 232 -----FGAAGTD----------DPLYEAVSAGRKHQGIEHWLPFFH-----ETLETLFDY 271

Query: 465 IPEDSLLFVDESHV-TIPQISGMYRGDFHRKATLAEYG 501
           +P+ ++   D+S    + +   +      RK  +++ G
Sbjct: 272 LPDATITLDDQSTPARLARWDSIQDQYETRKHAMSQKG 309



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 12/188 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 750 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA-IRTYVSEFDAVTIREALLREHYR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ E+L  +   +RY+    ++   E  + +     GKFDVL+  
Sbjct: 809 GGQSFYVVPRISDLPEIEEFLKTQLPELRYVVATGQMAAGELDDRMNAFYDGKFDVLLAT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK   YA   TK  Q 
Sbjct: 869 TIVESGLDIPTANTMVVHRADMFGLAQ----LYQIRGRVGR---SKTRAYAYLTTKPRQR 921

Query: 700 AIDETTRR 707
                 +R
Sbjct: 922 LTQTAEKR 929



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 12/105 (11%)

Query: 117 LKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLG 175
           L+   +  P      +   +    F     Y  + DQ  AI  +++ +HS +   +L+ G
Sbjct: 577 LRKAPVMDPP----PHAWEEFSARF----PYQETEDQLRAIEDVMEDLHSGQPMDRLICG 628

Query: 176 VTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             G GKT      A V         ++AP  +LA Q  + F   F
Sbjct: 629 DVGFGKTEVAMRAAFVAAMSGLQVAIVAPTTLLARQHAAGFAERF 673


>gi|213692705|ref|YP_002323291.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524166|gb|ACJ52913.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458861|dbj|BAJ69482.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 1194

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 95/257 (36%), Gaps = 24/257 (9%)

Query: 153 QPAAIAQLLKG---IHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKIL 205
           Q     +L  G   +       +L G+    +    A + +       +P +++  +   
Sbjct: 24  QDKTFLRLATGDIEVSDDVDNSVLAGIPEGLRPALAAAIGQGVAGKPGKPVVLVVASGRE 83

Query: 206 AAQLYSEFKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
           A +     ++++  +  +      ++    E   PR DT   + +       R++H +  
Sbjct: 84  AEETVGSLRSWYDGDPNDIAQLEAWETLPHERLSPRADTVASRMAVF----RRLKHPSDT 139

Query: 265 SLLERNDCIVVSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             +     I+V  +  +      G+G VE          +G+ +   E    L++  Y R
Sbjct: 140 DPMFGPIRILVMPIRSLIQPVVQGLGDVEPLV-----FTVGEDLPLDEAAKRLIENAYTR 194

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIK 378
            D+ + RG F V G  +++FP        R+  FG++I+ I EF+    +   + ++TI 
Sbjct: 195 VDLVMDRGEFAVRGGILDVFPP-TAPHPVRIEFFGDEIDTIKEFHASDQRTYGDGLKTIW 253

Query: 379 IYANSHYVTPRPTLNTA 395
             A             A
Sbjct: 254 ATACRELQLTDAVRARA 270



 Score = 42.4 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 789 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAVRRELLRG 847

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +    + + ++           H ++   +  +IIRD      DVLV   
Sbjct: 848 GQVFYVHNRVQDIASIADKIHTLVPEAHVGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTT 907

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    +K +  
Sbjct: 908 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPSKPMTE 962



 Score = 38.9 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A Q G ++ + V T    ++  E  +E      + V  M     T E 
Sbjct: 671 GKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQHYETFSERFEGFPVNVAAMSRFQTTKEI 730

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEG 663
              +  LR G  DV++G + LL   +   + GLV I +  + G
Sbjct: 731 NGTVEGLRSGTVDVVIGTHKLLNPKITFKDLGLVIIDEEQRFG 773


>gi|222085973|ref|YP_002544505.1| transcription-repair coupling factor [Agrobacterium radiobacter
           K84]
 gi|221723421|gb|ACM26577.1| transcription-repair coupling factor [Agrobacterium radiobacter
           K84]
          Length = 1166

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 82/514 (15%), Positives = 160/514 (31%), Gaps = 84/514 (16%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           V    + F +A++      P   +  +    A +        P   V    ++ D    +
Sbjct: 22  VPAGMEPFLLAEL-ARTGEPVAYVMSDGQHMADVEQMLGFLAPEIPVLTLPAW-DCLPYD 79

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
              P +DT   + ++++  I   R             ++V+  + +  +   +    +  
Sbjct: 80  RVSPSSDTSARRLAALSGLIAYHRKP-------HAAIVLVTVNAMLQKVAPQDVIESLAF 132

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
             + G+ V   ++   L +  + R       G + V G  +++F    E+   R+  FG+
Sbjct: 133 SARPGNQVRMDDIAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGTEE-PVRLDFFGD 191

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
            +E I  F P + +    V ++ +   S       T++            R   L   G 
Sbjct: 192 TLESIRSFDPASQRTTGQVRSLDLNPMSEVTLTPDTISRF----------RKNYLSSFGA 241

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                 L   ++              +E++          E   T+F+Y+     L  D 
Sbjct: 242 ATRDDALYVAVS-------EGRRYAGMEHWLPLFY-----EKLETVFDYL-RGFRLVTD- 287

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535
                   +     +   K     Y  RL S     P +    + +   T     TPG  
Sbjct: 288 -------HTVREAAEERSKLVFDYYDARLNSGQ---PAK----SQMSQGTPYKPVTPGQL 333

Query: 536 ELE-----QCQGIIVEQIIRPTGLVDPP------VEIR---------------SARTQVE 569
            L+     +         I P    +        +E R                     +
Sbjct: 334 YLDGGTLSKALDAFNAIRISPFNEHEGEARRVINIEARQGPRWARSATENADAERVNVFD 393

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            V   I      G +I++T  T+   + L + L E  +        VKT+E  + +  L 
Sbjct: 394 SVVKHIAERRAAGDKIMITAWTEGSLDRLLQVLAEHGLAR------VKTVEAFKDLATLA 447

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            G+    V    L  G ++ +  LV I + D  G
Sbjct: 448 KGEAAAAVLS--LEAGFEVGD--LVVIGEQDILG 477



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 92/261 (35%), Gaps = 37/261 (14%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
              + +SATP    L+     + E  +  T  VD       I    + V  + + +     
Sbjct: 772  HVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLV--IRETLMREHY 829

Query: 581  QGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +G +            D+  +L      ++V   H ++   E  +I+     G++DVL+ 
Sbjct: 830  RGGQSFYVCPRLADLADIHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLS 889

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  GLD+P    + +  AD  G  +    L Q  GR  R+      L+   + K   
Sbjct: 890  TTIVESGLDVPTANTLIVHRADMFGLAQ----LYQLRGRVGRSKVRAFALFTLPVNK--- 942

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
              +  T  RR K                  +++ +D +       ++        +L  +
Sbjct: 943  -VLTTTAERRLK------------------VLQSLDTLGAGFQLASHDLDIRGAGNLLGE 983

Query: 759  KGKAHLK----SLRKQMHLAA 775
            +   H+K     L +QM   A
Sbjct: 984  EQSGHIKEVGFELYQQMLEEA 1004


>gi|193077268|gb|ABO12050.2| transcription-repair coupling protein [Acinetobacter baumannii ATCC
           17978]
          Length = 1153

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 63/465 (13%), Positives = 148/465 (31%), Gaps = 65/465 (13%)

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
           ++        +++A N    AQL SE + +     +      ++    +   P  D   E
Sbjct: 36  EIATQHSSLLVLVARNNQHVAQLESELEFYGVKPTI---FPDWEILPYDRLSPHQDIVSE 92

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           + + ++              + +   +++S+ +    +            +K+G   + +
Sbjct: 93  RLAILSN-------------MPQQGVLLISASTLAQRVAPYSWVLGEHFDIKVGQKFDLE 139

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +    LV+  Y   D     G F V G  ++IF +  ++   R+ +F ++I+ +  F P 
Sbjct: 140 QQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIF-ASGQESPIRIDLFDDEIDSLKFFDPE 198

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           T +    +++  +     +                  + R  E        +        
Sbjct: 199 TQRTTTTLKSFTVLPAKEFPLKEGRSV---------FRDRYSEFFPTANPKK-------- 241

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT-----IP 481
               + +    +   IE Y      +   +       Y+P++ ++       T       
Sbjct: 242 NPIYQDVLDGIASPGIEFYLPLFFDKEQMQTQSMFTTYLPKNCIVITTNDIDTDLTSFWK 301

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           ++   Y    H           L    ++      ++  +     +VSA      +E+  
Sbjct: 302 EVMRRYEDRRHNMDQPILAPEELFISPNHLLSALNQFPRM-----LVSA----ETIEEKA 352

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G +  +  +P  L   P + +     V+   DE N        +LL   +    E L + 
Sbjct: 353 GALNLKTEQPPKLPVDPKKEKPFSA-VKKYIDEANHP------VLLVAESAGRRESLKDA 405

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L           S +  +  +E     ++ +F + +    L  GL
Sbjct: 406 LR----------SSLGEIPNVENFEQFQISQFAIAITNAPLDRGL 440



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 95/259 (36%), Gaps = 52/259 (20%)

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
             +  L+ VDE H    +     +        L      +P     R L    ++ +R  
Sbjct: 725 FKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIP-----RTLNMA-FSGMRDL 778

Query: 525 TIVVSATP-------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN- 576
           +I+  ATP        ++  E     I E I+R                QV  +++E+  
Sbjct: 779 SII--ATPPARRLAVKTFVQEHTDASIKEAILRELLR----------GGQVYFLHNEVET 826

Query: 577 -LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A + +R+L+                E  + V   H +++  E  ++++     +++V
Sbjct: 827 IERAAENIRVLV---------------PEARVAVA--HGQMRERELEQVMQQFYHKEYNV 869

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +  
Sbjct: 870 LVCSTIIETGIDVPNANTILIERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVP 922

Query: 696 SIQLAIDETTRRR-EKQLE 713
           SI+    +  +R    Q  
Sbjct: 923 SIKHLKGDAEKRLDAIQRA 941



 Score = 39.3 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 88/232 (37%), Gaps = 32/232 (13%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q G ++ + V T    ++  E   +   +  +R+  +         
Sbjct: 638 GKTEVAMRAAFIAVQNGKQVAVLVPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTH 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++ I DL  GK D++VG + LL+E +   + GL+ + +  + G    +        +A R
Sbjct: 698 LKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMVVDEEHRFGVRDKERI------KALR 751

Query: 681 NVNSKVILYADTITKSIQLA---------IDETTRRREKQLEHNKKHNINPQSVKEKIME 731
                + L A  I +++ +A         I     RR       ++H     S+KE I+ 
Sbjct: 752 ADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEH--TDASIKEAILR 809

Query: 732 VI----------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
            +          + +   + A  NI +   +  ++   G+   + L + M  
Sbjct: 810 ELLRGGQVYFLHNEVETIERAAENIRVLVPEARVAVAHGQMRERELEQVMQQ 861


>gi|260575079|ref|ZP_05843080.1| transcription-repair coupling factor [Rhodobacter sp. SW2]
 gi|259022701|gb|EEW25996.1| transcription-repair coupling factor [Rhodobacter sp. SW2]
          Length = 1147

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 80/504 (15%), Positives = 163/504 (32%), Gaps = 74/504 (14%)

Query: 176 VTGSGKTFTMAKVIEAMQR--PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           + G+ K +    +   + R  P I +A +    A + +      P   V           
Sbjct: 9   LGGAPKGYDARLLARELARGVPVIHVARDDKRMALMRAALAVMAPEAVVL---------- 58

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV---SSVSCIYGIGSVESY 290
               +P  D       S N +I   R +   +L +      V   +  +    + +    
Sbjct: 59  ---DLPAWDCLPYDRVSPNPEICARRMATLAALAQGVAGPFVLLTTVSAATQRLPTRAVL 115

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +      ++GD V++  L   L +  +         G + + G  I+I+P        R+
Sbjct: 116 AASSFSARVGDRVDEGALRGFLSRMGFSLVTTVTEPGDYALRGGIIDIYPPGPGG-PVRL 174

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             FG+ ++    F P T + I+ +  + +   S  +     +    +  + E        
Sbjct: 175 DFFGDVLDGARRFDPATQRTIQKLSHVDLAPVSEVILDEAAITRFRQAYRIE-------F 227

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
              G                E +      Q +E++      R       TLF+Y+P+ S+
Sbjct: 228 GAAGVD----------DPLYEAVSAGRKHQGMEHWLPLFHARLE-----TLFDYLPQASV 272

Query: 471 LFVDE-SHVTIPQISGMYRGDFHRKATLAEYGFRL-----PSCMDNRPLRFEEWNC---- 520
           +  D  + V + +  G+      R+  L   G R+     P+      L   +W      
Sbjct: 273 MLDDAVTAVRLSRWDGIADQYDARREALTAKG-RMDTVYKPAAPALLYLDDADWEAALAP 331

Query: 521 -LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
                   +  +PG   L+   G             +  +E  S    +      +    
Sbjct: 332 HRVVQLSPLPQSPGPGVLD-AGGRAGRSF-----SAERQLESVSLFGALAAHIKALREER 385

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q    +++   ++   E L   L ++ +R             ++ +RDL  G+  + + +
Sbjct: 386 Q----VVIASWSEGARERLQGLLEDQGLRGAAH---------LKDMRDLPEGRGGLFLVV 432

Query: 640 NLLREGLDIPECGLVAILDADKEG 663
             L +G   P  GL  I + D  G
Sbjct: 433 WALEQGFTAP--GLAVISEQDVLG 454



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 68/178 (38%), Gaps = 9/178 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   V + +     +
Sbjct: 747 HVLTLTATPIPRTLQLSLTGVRDLSIIATPPVDRLA-IRTYVSEFDGITVREALLRERFR 805

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++  +L +    V ++  H ++   +  E +     GK+DVL+  
Sbjct: 806 GGQSFYVVPRISDLPEIEAFLRDHVPEVTHVIAHGQLAAHDLDERMNAFYDGKYDVLLAT 865

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +++  GLDIP    + +  AD  G  +    L Q  GR  R                +
Sbjct: 866 SIVESGLDIPAANTMIVHRADMFGLGQ----LYQIRGRVGRAKTRAYCYLTTKPRSPL 919



 Score = 41.2 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            Y  + DQ AAIA ++  + +     +L++G  G GKT      A V         V+ P
Sbjct: 595 PYQETDDQLAAIADVVADLEAGSPMDRLIVGDVGFGKTEVAMRAAFVAALAGMQVAVVCP 654

Query: 202 NKILAAQLYSEFKNFFPHNAVE 223
             +LA Q Y  F + F    +E
Sbjct: 655 TTLLARQHYRSFHDRFRGFPIE 676


>gi|91205666|ref|YP_538021.1| transcription-repair coupling factor [Rickettsia bellii RML369-C]
 gi|123388111|sp|Q1RI82|MFD_RICBR RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|91069210|gb|ABE04932.1| Transcription-repair coupling factor [Rickettsia bellii RML369-C]
          Length = 1120

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 66/371 (17%), Positives = 126/371 (33%), Gaps = 54/371 (14%)

Query: 179 SGKTF-TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           + K+F T+   I+  ++  +++  N+  A QLY +   F P   + YF            
Sbjct: 9   AAKSFFTIDSFIKNSKQDFVLVTSNEEEALQLYKQALFFLPSENIYYF------------ 56

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS--VSCIYGIGSVESYSQMIV 295
            P  DT     +S N  I   R      L       +V +   + +  +   + +++  +
Sbjct: 57  -PSYDTIPYDHTSPNCNILSKRAETLSKLTTNKGNKLVITHATNLLNKLPPKDFFAKYYL 115

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
           +L     +   EL   LV+  + R    +  G F V G+ +++     E   +R++   +
Sbjct: 116 KLFPKMKLSANELSKFLVENSFTRNASTVDVGEFAVRGEIVDLILP--ESKGYRINFSWD 173

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
            +E I +F   T    R+   + I   +  V    T++                L   G 
Sbjct: 174 YVESIKQFDIDTQISTRSCNELIISPANEIVLNPETISNFKDN----------YLRNFGV 223

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                 L + IT               E           G     L +Y+    ++F + 
Sbjct: 224 NHTDNPLYEAIT-------GGRKFSGYEQLLPLFYDSYSG-----LTDYLNNPVIIFDNL 271

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN-CLRPTTIVVSATPGS 534
           +   I +    Y   +  KA L           D   L+F  +   L P+ +  ++    
Sbjct: 272 TKQAILEFEHSYNDFY--KARL-----------DANKLKFNSFYPTLSPSQLYFTSLEAI 318

Query: 535 WELEQCQGIIV 545
             LEQ   I++
Sbjct: 319 ELLEQENNILI 329



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 12/192 (6%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQ 580
              + +SATP    L+     + E  I  T  ++   E+R++    + V   D +     
Sbjct: 729 THVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRL-EVRTSVMPFDPVIIRDALLHEHF 787

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G +    V      ED+ + L +    + Y   H ++   +  EI+ +   GKFD+L+ 
Sbjct: 788 RGGKSFFVVPRINDIEDIEKQLKQIVPELSYKVAHGKMSPNKIDEIMSEFYAGKFDILIS 847

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DI +   + I  AD  G  +    L Q  GR  R        YA     S +
Sbjct: 848 TTIIESGIDIQDANTMIIHKADMLGLSQ----LYQLRGRIGRGKMRG---YAYLTLPSHK 900

Query: 699 LAIDETTRRREK 710
                + RR E 
Sbjct: 901 KMTPHSLRRLEI 912



 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKT-------FTMAK 187
           ++   F  +  +  + DQ  AI  + + + +     +L+ G  G GKT       F +AK
Sbjct: 564 EEYDKFCAKFPFTETEDQLNAINDIREDLSNGMLMDRLICGDVGFGKTEVAMRAAFMVAK 623

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
            +        V+ P  IL +Q ++ F   F  + +            EA + R++    K
Sbjct: 624 SLNENSPQVAVVVPTTILCSQHFARFTERFKDSDLNIKQLSSVVSSKEAKIVRSELESGK 683

Query: 248 ESSI 251
            + I
Sbjct: 684 INII 687


>gi|256419455|ref|YP_003120108.1| transcription-repair coupling factor [Chitinophaga pinensis DSM
           2588]
 gi|256034363|gb|ACU57907.1| transcription-repair coupling factor [Chitinophaga pinensis DSM
           2588]
          Length = 1126

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 55/280 (19%), Positives = 113/280 (40%), Gaps = 30/280 (10%)

Query: 157 IAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVIE-AMQRPAIVMAPNKILAAQLYSEFK 214
           + QL+KGIH S  +   L G+TGS  TF  A   E A     + +  ++  AA  +++ +
Sbjct: 16  LQQLVKGIHLSDPQYFQLTGLTGSATTFVAAGAWEMANSVNHLFILNDREEAAYFHNDLE 75

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +      + YF   +              +  + +S +  +                 +V
Sbjct: 76  SITQGLDIFYFPDSFKKAG----------FFNEINSSHSMLRTEALMKFSGNAVHKKVLV 125

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
               +    + +  +Y+  +VQLK+GD ++  +LL+ LV   ++  D     G + + G 
Sbjct: 126 TYPEALWEKVAASVAYTGNMVQLKVGDVLKVDDLLNKLVSWGFEFTDFVYEPGQYALRGG 185

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++I+ S   +  +R+ +FG DI+ I  F P +    R +  + + AN      +    +
Sbjct: 186 ILDIY-SFGNEKPYRIELFGEDIDSIRLFDPESQLSERKLNQVTLIANMDTQGLKHEKAS 244

Query: 395 AMKYIKE-----------------ELKMRLIELEKEGRLL 417
            + ++ E                 +L+ RL    + G+ +
Sbjct: 245 LLGFLPENTIVWMKDPGYVQDVILQLEERLDAFLQTGQQV 284



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 14/171 (8%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVED---VYDEINLAAQ 580
           T+ ++ATP    L+    G     +I        P+E       V D   + D I    +
Sbjct: 717 TLTLTATPIPRTLQFSLMGARDLSVINTPPPNRQPIE---TEVHVFDHDLIRDAIYYETE 773

Query: 581 QGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G ++       +   +++  +     ++ +   H +++  +  E+I D    K+DVLV 
Sbjct: 774 RGGQVYFVYNRVKGLGEMSSLIKGLCPDLSIATAHGQMEGHQLEEVILDFIDRKYDVLVC 833

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            N++  G+DIP    + I +A   G     + L Q  GR  R+ N K   Y
Sbjct: 834 TNIVESGVDIPNANTIIINNAHHFGL----SDLHQLRGRVGRS-NKKAFCY 879


>gi|326772340|ref|ZP_08231625.1| transcription-repair coupling factor [Actinomyces viscosus C505]
 gi|326638473|gb|EGE39374.1| transcription-repair coupling factor [Actinomyces viscosus C505]
          Length = 492

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 68/335 (20%), Positives = 114/335 (34%), Gaps = 31/335 (9%)

Query: 63  RMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMT-PSVQALARLIQSDNPLLKNGK 121
                    T S     S    S        +  + +T  +   L  L+          +
Sbjct: 6   SSPGTPTPGTRSAAGTGSAGPSSADRPGPPVVPGRGVTRLAAVLLTALLPPLLADADIAR 65

Query: 122 IWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGK 181
                 S S  + S  +            G +PA +A +  G    E VQ + G  G   
Sbjct: 66  TVRAASSRSRTDRSLVVAP----------GARPAVLAAMALG---EEGVQRVAG--GDAP 110

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
               A+V      P +V+      A +     +++ P   V    ++ +    E   PR 
Sbjct: 111 AAGSAEV---SGTPLLVVTATGREAEETALALRSYLPAEDVAVMPAW-ETLPHERLSPRA 166

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIG 300
           DT  ++ S     + R+ H     ++      V + ++  I G+G +E       QL  G
Sbjct: 167 DTVAQRLSV----LRRLAHPEEGGVIRVLIVPVRALLAPVIAGLGELEPV-----QLAPG 217

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
            +V   E    L    Y R D+   RG + V G  +++FP   E    RV  FG++I+E+
Sbjct: 218 LTVGLDETARRLEAAAYTRVDMVESRGEYAVRGGILDVFPP-SEPRPVRVDFFGDEIDEV 276

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           S F     + I  +  +   A    V        A
Sbjct: 277 SSFAVADQRTIETLGAVTATACRELVLTDAVRERA 311


>gi|184201352|ref|YP_001855559.1| transcription-repair coupling factor [Kocuria rhizophila DC2201]
 gi|183581582|dbj|BAG30053.1| transcription-repair coupling factor [Kocuria rhizophila DC2201]
          Length = 1254

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/307 (17%), Positives = 103/307 (33%), Gaps = 39/307 (12%)

Query: 190 EAMQRPAIV-MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
                P ++ +      A +L +   ++ P   +  F S+ +    E   PR+DT  ++ 
Sbjct: 71  AEAHAPVLLAVTATGREAEELQAALGSYLPSEQIANFPSW-ETLPHERLSPRSDTVGQRL 129

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           S        +R        E+   +VV+ V  +             V L+ G   + ++L
Sbjct: 130 SV-------LRRLERTDPSEQPLRVVVAPVRSVLQPVVAGLGQMEPVTLRTGQDYDFQQL 182

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
           +  L    Y R D+   RG F V G  I++FP   ED   R   FG++++E+  F     
Sbjct: 183 VVELAGAAYSRVDMVTRRGEFAVRGGIIDVFPP-TEDHPVRAEFFGDELDEMRWFAVADQ 241

Query: 369 QKIRNVETI---KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           + +   E             +      + A      +LK +L    +             
Sbjct: 242 RTLTTAEHPSVIVAPPCRELLITPSVQSRA-----AKLKEQLPGGREM------------ 284

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
               LE +      + +E+ +  L   +      +L    P  S+  V E      +   
Sbjct: 285 ----LERIAGGQYVEGMESLAPLL--ADEMLQVMSLL---PAGSMTVVLEPEKVRARAHD 335

Query: 486 MYRGDFH 492
           +   +  
Sbjct: 336 LVATNEE 342



 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 56/151 (37%), Gaps = 15/151 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     T    PP E     T V     + V   I    
Sbjct: 844 VLAMSATPIPRTLEMSMTGIRETSTLAT----PPEERHPVLTYVGPYTNKQVSAAIRREL 899

Query: 580 QQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +  ++          E    +L E + E  I V   H ++      +II D    KFDV
Sbjct: 900 MREGQVFFIHNRVSTIEAQAKELAELVPEARIAVA--HGQMTESRLEQIIVDFWEKKFDV 957

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLR 666
           LV   ++  GLDI     + +  AD+ G  +
Sbjct: 958 LVCTTIVETGLDIANANTLIVDHADRYGLSQ 988


>gi|160914796|ref|ZP_02077010.1| hypothetical protein EUBDOL_00803 [Eubacterium dolichum DSM 3991]
 gi|158433336|gb|EDP11625.1| hypothetical protein EUBDOL_00803 [Eubacterium dolichum DSM 3991]
          Length = 1143

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 68/483 (14%), Positives = 159/483 (32%), Gaps = 64/483 (13%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +K   L  ++ S +   +A   +   +  +++  N   A +LY    +         F  
Sbjct: 19  KKESKLGNLSLSEEALIVASAFQKQPQTMLIVKNNTYTAQRLYERLYSLLGEKV--LFFG 76

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
             +  + EA     +T   +   +++  D            +   +V+++ + I+ + + 
Sbjct: 77  VEESLRVEAIAASPETKANQMEVLSKLFD-----------NKPYIVVMNAAASIHYLPAP 125

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           E + Q  + +K  +    ++L + L +  Y           +   G  I+++  + E   
Sbjct: 126 EVFQQHCISIKTNEETNYEQLKTLLFEAGYTHVSRVDQPLCYAARGGIIDVYSMNYE-YP 184

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  F N+I+ I  F   T + I  ++   I   S  +     + T  +    EL    
Sbjct: 185 LRIEFFDNEIDSIRFFDISTQRTIEVIQEASIIPASDILFTNEEIQTITQLALAELANVK 244

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                    LEA      +  DL+ +        +  Y  +L  +       T+ +Y+ +
Sbjct: 245 GFTNASKEHLEA-----IVNEDLDAIANHSPEARLYKYRAFLNQQ------ATIMDYV-K 292

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIV 527
           ++ + V         I      +      + +    L        L+F  +         
Sbjct: 293 NACVIVSSEEEVKDSIKHAAEENIAYIQEMYQEANGL--------LKFSMF--------- 335

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
                     +  + I    +I     VD         +Q+      +        R + 
Sbjct: 336 ---------ADFSKAIQAHDVIYVKMFVDYKQ---PLSSQI----MTMAQGDINLERTMD 379

Query: 588 TVLTKRMAEDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
            ++T+  ++ +   L E  I+     +  +  + +R+E    L+ G   + +  + L EG
Sbjct: 380 QLITQSHSDKVLLCLDESEIKRVRELLDEKNVSYQRVEETDTLKNG---ISILHHRLIEG 436

Query: 646 LDI 648
              
Sbjct: 437 FTC 439



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 13/193 (6%)

Query: 525 TIVVSATPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
            + +SATP    L+        + Q+  P      PV+          + + I     + 
Sbjct: 752 VLSLSATPIPRTLQMSLIGIRSLSQLNTPPQ-NRMPVQTYVIEKNFAMIKEIIQRELARN 810

Query: 583 LRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +   ++   L E   ++ +   H ++   +  +++       + VLV   
Sbjct: 811 GQVFYLYNNVKEIYNVARKLREALPDVEIGVAHGQMSREDIEDVMLQFTENHYQVLVCTT 870

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+DIP    + I +AD  G  +    L Q  GR  R+          +     Q  
Sbjct: 871 IIETGIDIPNANTILIDEADHFGLAQ----LYQIKGRVGRSDRLAYAYLMYSP----QRQ 922

Query: 701 IDETTRRREKQLE 713
           + E   +R K ++
Sbjct: 923 LSEIAMKRLKSIK 935


>gi|115524796|ref|YP_781707.1| transcription-repair coupling factor [Rhodopseudomonas palustris
           BisA53]
 gi|115518743|gb|ABJ06727.1| transcription-repair coupling factor [Rhodopseudomonas palustris
           BisA53]
          Length = 1179

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 145/445 (32%), Gaps = 67/445 (15%)

Query: 185 MAKVIEAMQRP----AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           +A+ + A  +P      V+  +     QL    + F P  AV  F             P 
Sbjct: 35  LARAVAAKPKPPAVSLAVICRDGPRMQQLARALEFFAPDLAVMQF-------------PA 81

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLL----ERNDCIVVSSVSCI-YGIGSVESYSQMIV 295
            D       S +  I   R +    L          IV+++V+ +   + + E  +   +
Sbjct: 82  WDCQPYDRVSPHGGILAQRLTTLARLSRLAGSEKPLIVLTTVNAMVQRVPAREVVAAQAL 141

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +  G  V    +++ L    Y R       G + V G  +++FP+ L D   R   FG+
Sbjct: 142 SVAPGHVVPMDSIVAWLEHNGYSRASTVREPGEYAVRGGILDLFPAGL-DQPVRFDFFGD 200

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
            +E I  F   T + + ++  + +   S +     T+             R+  + + G 
Sbjct: 201 TLESIRAFDAETQRTLLDMRALDLVPISEFQLVTETIRRF----------RMGYVAQFGA 250

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV-- 473
            +    L        E +        +E++          E   TLF+Y+ + + + +  
Sbjct: 251 PVRDDAL-------YEAVSEGRRYPGMEHWLPLF-----QERMDTLFDYL-DGTPIAIEP 297

Query: 474 ---DESHVTIPQISGMYRGDFHRKATLAEYGFR---LPSCMDNRPLRFEEWNCLRPTTIV 527
              D +     QI+  Y         L   G     LP+  D   L   EW+       +
Sbjct: 298 QSEDAARERFKQIADYYLARRE-ARDLPGSGAIYNPLPA--DQLYLVEHEWDKRLEGRAL 354

Query: 528 VSATP--GSWELEQCQGIIVEQIIRPT--GLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
              TP     E          +  R       D  V +  A      V   I+       
Sbjct: 355 ARLTPFAVPEEATGAVIDFGARAGRNFAPERADTSVNVFGA------VVAHIHALQAARK 408

Query: 584 RILLTVLTKRMAEDLTEYLYERNIR 608
           ++++T+ ++   + +   L +  + 
Sbjct: 409 KVVVTLWSEGSRDRMKSMLTDHKLH 433



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 74/191 (38%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + +  I  +  VD    +R+     + +   + +     +
Sbjct: 773 HVLTLSATPIPRTLQLALTGVRDLSIIASAPVDRLA-VRTFVAPHDPLMIREALLRERYR 831

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +             + ++L +    ++V   H ++      +II     GK+D+L+  
Sbjct: 832 GGQAFYVCPRIEDLAGVKDFLDKHVPEMKVAVAHGQMPPTVIEDIISAFYDGKYDILLST 891

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +++  GLDIP    + +  AD  G  +    L Q  GR  R   SK+  YA     S   
Sbjct: 892 SIVESGLDIPNANTLIVHRADMFGLAQ----LYQLRGRVGR---SKLRAYALFTLPSTHK 944

Query: 700 AIDETTRRREK 710
              +  RR + 
Sbjct: 945 ITAQAERRLKV 955


>gi|329297178|ref|ZP_08254514.1| transcription-repair coupling factor [Plautia stali symbiont]
          Length = 1147

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 111/310 (35%), Gaps = 40/310 (12%)

Query: 165 HSREKVQLLLG-VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            + +  QL  G + G+ +    A + E    P +++ P+   A +L  E + F       
Sbjct: 12  KAGDHRQL--GQLVGAAQAVECASITERHSGPVLMITPDMQSALRLQEEIRQFTD----- 64

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
                     P   +   +T      S ++ I   R S    L      +++  V+ +  
Sbjct: 65  ---------LPVTNLADWETLPYDSFSPHQDIISARLSTLYQLPTLTRGMLILPVNTLMQ 115

Query: 284 IGSVESYSQ-MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
                S+     + ++ G  + +  L   L +  Y+  D  +  G +   G  +++FP  
Sbjct: 116 RVCPHSFLHGHALVMQQGQKLSRDALRDQLEQAGYRHVDQVMEHGEYATRGALLDLFPM- 174

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
             D  +R+  F ++I+ +  F   + + +  V  I +     +    PT   A++  +  
Sbjct: 175 GSDQPYRIDFFDDEIDSLRLFDVDSQRTLEAVSAINLLPAHEF----PTDKAAIELFRSR 230

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            +             E + + Q+++ D            I+ +      +      PTLF
Sbjct: 231 WRETFDVRR------EPEHVYQQVSKDT-------LPAGIKYWQPLFFEQEL----PTLF 273

Query: 463 EYIPEDSLLF 472
            Y+P  +L+ 
Sbjct: 274 SYLPASTLVL 283



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREVLR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E   + L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKAAQRLAELVPEARIAIGHGQMRERDLERMMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+D+P    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDVPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPPPKAM 922


>gi|238758409|ref|ZP_04619586.1| Transcription-repair-coupling factor [Yersinia aldovae ATCC 35236]
 gi|238703313|gb|EEP95853.1| Transcription-repair-coupling factor [Yersinia aldovae ATCC 35236]
          Length = 1148

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 116/298 (38%), Gaps = 37/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE    P +++ P+     +L  E + F                QP 
Sbjct: 22  LTGSACAVECAQIIERHDGPVMLITPDMQTTLRLRDEIQQFSS--------------QPV 67

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
           + +   +T      S ++ I   R S    L      +++  ++ +   +   E      
Sbjct: 68  STLSDWETLPYDSFSPHQDIISARLSCLYHLPAMERGVIILPINTLMQRVCPHEFLHGHA 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K G  + + +L + L +  Y+  D  +  G F   G  ++++P   E+  +R+  F 
Sbjct: 128 LVMKKGQHLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEE-PYRIDFFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           +DI+ +  F   + + +  VE I +     +   +     A++  + + + +        
Sbjct: 187 DDIDSLRVFDVDSQRTLSEVEQINLLPAHEFPIDK----AAIELFRSQWREQ-------- 234

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
              E +R  + I    + +        IE +          +P P+LF Y+PE++LL 
Sbjct: 235 --FEVRRDAEHI---YQQVSKGIWPAGIEYWQPLFFS----QPLPSLFSYLPENTLLV 283



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E  T+ L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKATQRLAELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 922


>gi|296453842|ref|YP_003660985.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183273|gb|ADH00155.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 1194

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 95/257 (36%), Gaps = 24/257 (9%)

Query: 153 QPAAIAQLLKG---IHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKIL 205
           Q     +L  G   +       +L G+    +    A + +       +P +++  +   
Sbjct: 24  QDKTFLRLATGDIEVSDDVDNSVLAGIPEGLRPALAAAIGQGVAGKPGKPVVLVVASGRE 83

Query: 206 AAQLYSEFKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
           A +     ++++  +  +      ++    E   PR DT   + +       R++H +  
Sbjct: 84  AEETVGSLRSWYDGDPNDIAQLEAWETLPHERLSPRADTVASRMAVF----RRLKHPSDT 139

Query: 265 SLLERNDCIVVSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             +     I+V  +  +      G+G VE          +G+ +   E    L++  Y R
Sbjct: 140 DPMFGPIRILVMPIRSLIQPVVQGLGDVEPLV-----FTVGEDLPLDEAAKRLIENAYTR 194

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIK 378
            D+ + RG F V G  +++FP        R+  FG++I+ I EF+    +   + ++TI 
Sbjct: 195 VDLVMDRGEFAVRGGILDVFPP-TAPHPVRIEFFGDEIDTIKEFHASDQRTYGDGLKTIW 253

Query: 379 IYANSHYVTPRPTLNTA 395
             A             A
Sbjct: 254 ATACRELQLTDAVRARA 270



 Score = 42.4 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 789 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAVRRELLRG 847

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +    + + ++           H ++   +  +IIRD      DVLV   
Sbjct: 848 GQVFYVHNRVQDIASIADKIHTLVPEAHVGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTT 907

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    +K +  
Sbjct: 908 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPSKPMTE 962



 Score = 38.5 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A Q G ++ + V T    ++  E  +E      + V  M     T E 
Sbjct: 671 GKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQHYETFSERFEGFPVNVAAMSRFQTTKEI 730

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEG 663
              +  LR G  DV++G + LL   +   + GLV I +  + G
Sbjct: 731 NGTVEGLRSGTVDVVIGTHKLLNPKITFKDLGLVIIDEEQRFG 773


>gi|292669445|ref|ZP_06602871.1| transcription-repair-coupling factor [Selenomonas noxia ATCC 43541]
 gi|292648898|gb|EFF66870.1| transcription-repair-coupling factor [Selenomonas noxia ATCC 43541]
          Length = 1097

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 109/629 (17%), Positives = 194/629 (30%), Gaps = 86/629 (13%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + QL + +    +  L  G  GS K   +A   +A  RP +V+   +        +    
Sbjct: 14  VRQLAEALDDTPQRILAYGFAGSMKHAAVATAYDAAPRPLVVITSGRDALRAWQEDLVTL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR--MRHSATRSLLERNDCIV 274
            P   +               +P  D          + ++R   R +    LL     IV
Sbjct: 74  LPEADIY-------------ELPELDRIDFAAPGAAKGLERSAQRMNILARLLRHEPIIV 120

Query: 275 VSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           ++ +      G S   +++  + L +G  +  ++L++ L    Y+        G F V G
Sbjct: 121 LADIGAAAQRGLSAAEFARASLTLSLGMMLPHEDLMARLDTLGYEHVMEVEHVGQFSVRG 180

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP--- 390
             ++IFP +   +  R+  F  +I+ + E+  LT + I+N+ T  +              
Sbjct: 181 GIVDIFPINAL-LPLRIEFFDTEIDSMREYDVLTKRSIKNISTASVMPLHAADDEGEACF 239

Query: 391 -TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
            +   A      +   RLI   ++    +A R     ++  E L   G+    E ++  +
Sbjct: 240 LSYLGAGAVTVFDEPARLISALQDAVQEDATRAA--RSFSWEELVAAGA-AGHELFASLM 296

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
               P   P  L  +               +P  +      F R+ +L E   R     +
Sbjct: 297 NRVVPSCAPAALIGF-------------QMMPMTA------FQRQFSLLESELRRYLADE 337

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
            R L                             +I E     TG   P V +R       
Sbjct: 338 TRVLVLAGSGERAN-------------------LIREMF---TGWNLPAVILRKEG---- 371

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D  D     A   LR     L+      LTE           +H      +RI   R++ 
Sbjct: 372 DAQDGAVGIASGALRA-GFELSTSHIAVLTE-QDIFGRHKAKLHRMAPAGDRIRHFREIA 429

Query: 630 LGKFDVLVGINLLRE-GLDIPECGLV------AILDADKEGFLRS-----KTSLIQTIGR 677
            G + V V   + +  G++  E   V           D + F+ +         I   G 
Sbjct: 430 PGDYVVHVSHGIGKYIGVETLEVAGVHRDYLHIQYGGDDKLFVPTDQVGLLQKYIGAEGS 489

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK--HNINPQSVKEKIMEVIDP 735
             R        +A    K+ +   D   +  E   E      H   P    ++  E   P
Sbjct: 490 VPRLHRMGTADWARARAKAQKSVEDIADKLLEIYAERQLAKGHAFTPDDAGQREFEEAFP 549

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHL 764
              E         + ++   S+K     L
Sbjct: 550 -YQETDDQLRAVAEIKRDMESEKPMDRLL 577



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     G     II        PV+     +    +   I     +G 
Sbjct: 703 VLTLSATPIPRTLHMSLAGARDMSIIETPPADRLPVQSYVVESSDAMMRGAIERELSRGG 762

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + + E+L       R    H ++      +++ D   G +D+L+  ++
Sbjct: 763 QVYFIYNRIESIDRMREHLMRLVPEARIASAHGQMNEDILEQVMMDFYEGHYDILLATSI 822

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+     + + DAD+ G  +    L Q  GR  R+       +     K    A+
Sbjct: 823 VENGIDVANANTIIVYDADRFGLSQ----LYQMRGRVGRSAKMAFAYFTYRRDK----AL 874

Query: 702 DETTRRREKQLE 713
            ET  +R + ++
Sbjct: 875 SETAEKRLQAMK 886


>gi|296535472|ref|ZP_06897661.1| transcription-repair coupling factor [Roseomonas cervicalis ATCC
           49957]
 gi|296264193|gb|EFH10629.1| transcription-repair coupling factor [Roseomonas cervicalis ATCC
           49957]
          Length = 1174

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 70/448 (15%), Positives = 145/448 (32%), Gaps = 50/448 (11%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
            + G         +A+     +   + +  +    A+L      F P   V  F      
Sbjct: 24  TVHGAPEGFDALLLARRRVEAEGFVLHVCRDDARMARLQDGLAFFAPEVEVLRF------ 77

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE---RNDCIVVSSVSCIYGIGSVE 288
                  P  D       S + ++   R +    LLE   R   ++ +  + +  +    
Sbjct: 78  -------PAWDCLPYDRVSPHAELVAERVATLARLLEPEARPRIVLTTVNALVQRVPPRV 130

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            +    + LK G  +  + L   L    Y R    +  G + V G   +++P+  E    
Sbjct: 131 VFEGATLHLKKGGRIRPEALAGFLDANGYNRVATVMEPGEYAVRGGLFDLYPA-GEPEPV 189

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+ +FG++IE +  F   T +    V  + +      +    ++             R  
Sbjct: 190 RLDLFGDEIETLRRFGTETQRSGEAVAELWLRPVGEVLLDEDSIARF----------RAG 239

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
             +  G       L   ++              +E+Y+         E   TL +Y+P  
Sbjct: 240 YRDLFGMPAAEDPLYVSVS-------AGRRHPGMEHYAPLFH-----ESMATLLDYMPGA 287

Query: 469 SLLFVDESH-VTIPQISGMYRGDFHRKATLAEYG--FRLPSCMDNRPLRFEEWNCLRPTT 525
           S+    ++      ++  +      R+    E    +R P       L   +W+ +    
Sbjct: 288 SVSLDHQAEDALTTRLEMVEDHYEARRTPPREGEVPYR-PVPPRRLYLNRRDWDAMLAGA 346

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA-RTQVEDVYDEINLAAQQGLR 584
            +++ +P     +      ++   RP  L    VE R+A +       ++    A+ G R
Sbjct: 347 PLLAFSPFP---KPEGAEGLDAGGRPGRLY---VEARAAGQNAFAVYREQAEAQAKAGQR 400

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYM 612
            ++   T+   E L   L E  I  + +
Sbjct: 401 PVVAAWTRGSRERLGNLLRENRIPAQAV 428



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 11/170 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
             + ++ATP    L+     + E  +  T  VD       I      V  + + +     
Sbjct: 772 HVLTLTATPIPRTLQLALTGVREMSVIATPPVDRLAVRTFIMPFDAVV--IREALQRERF 829

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G ++   V        +   L +     R +  H  +   E   ++ +   GKFD+L+ 
Sbjct: 830 RGGQVFCVVPRLEDLPKMVTRLADIVPEARVVQAHGRLTPTELERVMTEFGDGKFDILLA 889

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            N++  GLD+P    + I  AD  G  +    L Q  GR  R        
Sbjct: 890 TNIVESGLDMPAVNTLIIYRADMFGLAQ----LYQLRGRVGRGKQRGYAY 935


>gi|312131279|ref|YP_003998619.1| transcriptioN-repair coupling factor [Leadbetterella byssophila DSM
           17132]
 gi|311907825|gb|ADQ18266.1| transcription-repair coupling factor [Leadbetterella byssophila DSM
           17132]
          Length = 1113

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 126/293 (43%), Gaps = 22/293 (7%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA--VE 223
            R     + G+TGS K+ + A + E +++  +V+  ++  A   Y++ +N + + A  + 
Sbjct: 24  GRTHHVRIQGLTGSLKSISTAALYENLKKFILVILEDREEALYFYNDLQNLYGYEAEEIA 83

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
           YF + + +   E         IE  + I       R S+T+ LL     IV    + +  
Sbjct: 84  YFPASFKHESGE---------IENANIIQRSALLTRFSSTQPLL-----IVTYPEALVEK 129

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           + S +S     +++K+GD+++   +   L   Q+++ D     G F V G  +++F S+ 
Sbjct: 130 VVSKKSLVANTLKVKVGDTLDLNFVTELLDSYQFEKTDFVYEPGQFAVRGGILDVF-SYS 188

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
            +V +R+ +FG+++E I  F   +    +  + I I  N           +   ++  + 
Sbjct: 189 AEVPYRIELFGDEVESIRAFEAESQLSTQKTDQISITPNLQDKLQVEETVSFFNFLPSDA 248

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
            M + +L     L  +    Q++       E TGS     N   ++T  N  E
Sbjct: 249 LMAINDL--SFILDRSDAYYQKVER---RYEETGSGDINLNLPPHVTHMNSEE 296



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 65/190 (34%), Gaps = 12/190 (6%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G     +I         VE R    + E + D I     +G 
Sbjct: 705 VLTLTATPIPRTLHFSLMGARDLSVIATPPPTRQTVETRVETFKEEIIRDAITYELNRGG 764

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   +Y      +    H +++  +  +++      + ++L+  N+
Sbjct: 765 QVFFVHNRVGDIDRIANIIYRLVPEAKIGVAHGQMEGEKLEKVMIRFIENETNILISTNI 824

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + I  A   G     + L Q  GR  R+              S+    
Sbjct: 825 IESGLDIPNANTIIINQAHMFGL----SDLHQMRGRVGRSNKKAFCYLLTPPLSSL---- 876

Query: 702 DETTRRREKQ 711
             T  R+  Q
Sbjct: 877 -TTDARKRMQ 885



 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        AA  G ++ + V T     +     +E L    + V Y++    T + 
Sbjct: 587 GKTEVAIRAAFKAAVDGKQVAVLVPTTILALQHFRTFSERLSNMPVTVDYLNRFKTTKDT 646

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEG 663
            + ++D++ GK D+L+G   LL + L   + GL+ I +  K G
Sbjct: 647 NKTLKDVKEGKVDILIGTQKLLSKSLQFKDLGLLIIDEEQKFG 689


>gi|239502151|ref|ZP_04661461.1| transcription-repair coupling factor [Acinetobacter baumannii
           AB900]
          Length = 1153

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 62/465 (13%), Positives = 148/465 (31%), Gaps = 65/465 (13%)

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
           ++        +++A N    AQL SE + +     +      ++    +   P  D   E
Sbjct: 36  EIATQHSSLLVLVARNNQHVAQLESELEFYGVKPTI---FPDWEILPYDRLSPHQDIVSE 92

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           + + ++              + +   +++S+ +    +            +K+G   + +
Sbjct: 93  RLAILSN-------------IPKQGVLLISASTLAQRVAPYSWVLGEHFDIKVGQKFDLE 139

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +    LV+  Y   D     G F V G  ++IF +  ++   R+ +F ++I+ +  F P 
Sbjct: 140 QQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIF-ASGQESPIRIDLFDDEIDSLKFFDPE 198

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           T +    +++  +     +                  + R  E        +        
Sbjct: 199 TQRTTTTLKSFTVLPAKEFPLKEGRSV---------FRDRYSEFFPTANPKK-------- 241

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV-----DESHVTIP 481
               + +    +   IE Y      +   +       Y+P++ ++        +      
Sbjct: 242 NPIYQDVLDGIASPGIEFYLPLFFDKEQMQSQSMFTTYLPKNCIVITTSDIDTDLTNFWK 301

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           ++   Y    H           L    ++      ++  +     +VSA      +E+  
Sbjct: 302 EVMRRYEDRRHNMDQPILAPEELFISPNHLLSALNQFPRM-----LVSA----ETIEEKA 352

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G +  +  +P  L   P + +     V+   DE N        +LL   +    E L + 
Sbjct: 353 GALNLKTEQPPKLPVDPKKEKPFSA-VKKYIDEANHP------VLLVAESAGRRESLKDA 405

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L           S +  +  +E     ++ +F + +    L  GL
Sbjct: 406 LR----------SSLGEIPNVENFEQFQISQFAIAITNAPLDRGL 440



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 95/259 (36%), Gaps = 52/259 (20%)

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
             +  L+ VDE H    +     +        L      +P     R L    ++ +R  
Sbjct: 725 FKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIP-----RTLNMA-FSGMRDL 778

Query: 525 TIVVSATP-------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN- 576
           +I+  ATP        ++  E     I E I+R                QV  +++E+  
Sbjct: 779 SII--ATPPARRLAVKTFVQEHTDASIKEAILRELLR----------GGQVYFLHNEVET 826

Query: 577 -LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A + +R+L+                E  + V   H +++  E  ++++     +++V
Sbjct: 827 IERAAENIRVLV---------------PEARVAVA--HGQMRERELEQVMQQFYHKEYNV 869

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +  
Sbjct: 870 LVCSTIIETGIDVPNANTILIERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVP 922

Query: 696 SIQLAIDETTRRR-EKQLE 713
           SI+    +  +R    Q  
Sbjct: 923 SIKHLKGDAEKRLDAIQRA 941



 Score = 39.3 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 88/232 (37%), Gaps = 32/232 (13%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q G ++ + V T    ++  E   +   +  +R+  +         
Sbjct: 638 GKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTH 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++ I DL  GK D++VG + LL+E +   + GL+ + +  + G    +        +A R
Sbjct: 698 LKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMVVDEEHRFGVRDKERI------KALR 751

Query: 681 NVNSKVILYADTITKSIQLA---------IDETTRRREKQLEHNKKHNINPQSVKEKIME 731
                + L A  I +++ +A         I     RR       ++H     S+KE I+ 
Sbjct: 752 ADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEH--TDASIKEAILR 809

Query: 732 VI----------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
            +          + +   + A  NI +   +  ++   G+   + L + M  
Sbjct: 810 ELLRGGQVYFLHNEVETIERAAENIRVLVPEARVAVAHGQMRERELEQVMQQ 861


>gi|291517134|emb|CBK70750.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           longum F8]
          Length = 1194

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 96/257 (37%), Gaps = 24/257 (9%)

Query: 153 QPAAIAQLLKG---IHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKIL 205
           Q     +L  G           +L G+    +    A + +       +P +++  +   
Sbjct: 24  QDKTFLKLAAGDIEASDDVDNSVLAGIPEGLRPALAAAIGQGVAGKPGKPVVLVVASGRE 83

Query: 206 AAQLYSEFKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SAT 263
           A +     ++++  +  +      ++    E   PR DT   + +       R++H S T
Sbjct: 84  AEETVGSLRSWYDGDPNDIAQLEAWETLPHERLSPRADTVASRMAVF----RRLKHPSDT 139

Query: 264 RSLLERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            S+      +V+   S I     G+G VE          +G+ +   E    L++  Y R
Sbjct: 140 DSMFGPIRILVMPIRSLIQPVVQGLGDVEPLV-----FTVGEDLPLDEAAKRLIENAYTR 194

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIK 378
            D+ + RG F V G  +++FP        R+  FG++I+ I EF+    +   + ++TI 
Sbjct: 195 VDLVMDRGEFAVRGGILDVFPP-TAPHPVRIEFFGDEIDTIKEFHASDQRTYGDGLKTIW 253

Query: 379 IYANSHYVTPRPTLNTA 395
             A             A
Sbjct: 254 ATACRELQLTDAVRTRA 270



 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 789 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAVRRELLRG 847

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +    + + ++           H ++   +  +IIRD      DVLV   
Sbjct: 848 GQVFYVHNRVQDISSIADKIHTLVPEAHVGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTT 907

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    +K +  
Sbjct: 908 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPSKPMTE 962


>gi|218666669|ref|YP_002424872.1| transcription-repair coupling factor [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218518882|gb|ACK79468.1| transcription-repair coupling factor [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 1149

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 101/321 (31%), Gaps = 41/321 (12%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G+  ++  A++    QRP +++ PN     +   E++ F P           +    +  
Sbjct: 24  GAADSWLAAQMTRQWQRPLLILLPNARDVEEWQREWRFFAPDLPAPLVFPDREILPYDRL 83

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
            P  D                R +   +L E     +    + +  +       Q    L
Sbjct: 84  APPADATAT------------RLATLATLPEWRGVCLAPLSAVLQRLPPRSFLDQHAFVL 131

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
            +GD +  +     L+   Y+        G     G  I++FPS    + +R+ +F   +
Sbjct: 132 AVGDHLSPEGFRQRLIDAGYRNVSEVSEAGELAWRGGIIDLFPS-GSPLPYRIELFDRVV 190

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           E I  F P T + ++ VE + +               A++  +   + R      + +  
Sbjct: 191 ESIRAFDPETQRTLQKVEGVSLLPAREVPVD----TAALQEFRSRFRAR---FSGDPQRA 243

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT--LFEYIPEDSLLFVDE 475
           E  R   R            + Q  E+Y            P    L  + P D ++F+  
Sbjct: 244 EIYRAASR----------GQAPQGAEHYLPLFF-------PECSHLLMHFPVDGVVFLPP 286

Query: 476 SHVTIPQISGMYRGDFHRKAT 496
                 +   + +    R   
Sbjct: 287 GLEASARH--IRQDWQERYEE 305



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 65/188 (34%), Gaps = 13/188 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        +R+     +D  V +       +G
Sbjct: 753 ILTLTATPIPRTLNLSLAGLRDLSIIAT-PPQRRQPVRTFVQIWDDATVIEACQRELHRG 811

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       R  E +   L       R    H ++   E   ++ D    +FD+L+   
Sbjct: 812 GQVYFLHNEVRDIERMAATLRRLLPEARLRVAHGQMPEGELEAVMLDFYHQRFDILLCTT 871

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D P    + I  ADK G  +    L Q  GR  R+                  A
Sbjct: 872 IIESGIDNPHANTILINRADKFGLAQ----LHQLRGRVGRSHQRAYAYLFTPDL----RA 923

Query: 701 IDETTRRR 708
           + +  RRR
Sbjct: 924 MSDDARRR 931


>gi|332851753|ref|ZP_08433678.1| transcription-repair coupling factor [Acinetobacter baumannii
           6013150]
 gi|332729760|gb|EGJ61095.1| transcription-repair coupling factor [Acinetobacter baumannii
           6013150]
          Length = 1153

 Score =  120 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 62/465 (13%), Positives = 149/465 (32%), Gaps = 65/465 (13%)

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
           ++        +++A N    AQL SE + +     +      ++    +   P  D   E
Sbjct: 36  EIATQYSSLLVLVARNNQHVAQLESELEFYGVKPTI---FPDWEILPYDRLSPHQDIVSE 92

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           + + ++              + +   +++S+ +    +            +K+G   + +
Sbjct: 93  RLAILSN-------------MPQQGVLLISASTLAQRVAPYSWVLGEHFDIKVGQKFDLE 139

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +    LV+  Y   D     G F V G  ++IF +  ++   R+ +F ++I+ +  F P 
Sbjct: 140 QQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIF-ASGQESPIRIDLFDDEIDSLKFFDPE 198

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           T +    +++  +     +                  + R  E        +        
Sbjct: 199 TQRTTTTLKSFTVLPAKEFPLKEGRSV---------FRDRYSEFFPTANPKK-------- 241

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD-----ESHVTIP 481
               + +    +   IE Y      +   +       Y+P++ ++  +     +      
Sbjct: 242 NPIYQDVLDGIASPGIEFYLPLFFDKEQMQSQSMFTTYLPKNCIVITNSDIDTDLTNFWK 301

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           ++   Y    H           L    ++      ++  +     +VSA      +E+  
Sbjct: 302 EVMRRYEDRRHNMDQPILAPEELFISPNHLLSALNQFPRM-----LVSA----ETIEEKA 352

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G +  +  +P  L   P + +     V+   DE N        +LL   +    E L + 
Sbjct: 353 GALNLKTEQPPKLPVDPKKEKPFSA-VKKYIDEANHP------VLLVAESAGRRESLKDA 405

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L           S +  +  +E     ++ +F + +    L  GL
Sbjct: 406 LR----------SSLGEIPNVENFEQFQISQFAIAITNAPLDRGL 440



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 95/259 (36%), Gaps = 52/259 (20%)

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
             +  L+ VDE H    +     +        L      +P     R L    ++ +R  
Sbjct: 725 FKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIP-----RTLNMA-FSGMRDL 778

Query: 525 TIVVSATP-------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN- 576
           +I+  ATP        ++  E     I E I+R                QV  +++E+  
Sbjct: 779 SII--ATPPARRLAVKTFVQEHTDASIKEAILRELLR----------GGQVYFLHNEVET 826

Query: 577 -LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A + +R+L+                E  + V   H +++  E  ++++     +++V
Sbjct: 827 IERAAENIRVLV---------------PEARVAVA--HGQMRERELEQVMQQFYHKEYNV 869

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +  
Sbjct: 870 LVCSTIIETGIDVPNANTILIERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVP 922

Query: 696 SIQLAIDETTRRR-EKQLE 713
           SI+    +  +R    Q  
Sbjct: 923 SIKHLKGDAEKRLDAIQRA 941



 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 88/232 (37%), Gaps = 32/232 (13%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q G ++ + V T    ++  E   +   +  +R+  +         
Sbjct: 638 GKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTH 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++ I DL  GK D++VG + LL+E +   + GL+ + +  + G    +        +A R
Sbjct: 698 LKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMVVDEEHRFGVRDKERI------KALR 751

Query: 681 NVNSKVILYADTITKSIQLA---------IDETTRRREKQLEHNKKHNINPQSVKEKIME 731
                + L A  I +++ +A         I     RR       ++H     S+KE I+ 
Sbjct: 752 ADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEH--TDASIKEAILR 809

Query: 732 VI----------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
            +          + +   + A  NI +   +  ++   G+   + L + M  
Sbjct: 810 ELLRGGQVYFLHNEVETIERAAENIRVLVPEARVAVAHGQMRERELEQVMQQ 861


>gi|184157970|ref|YP_001846309.1| transcription-repair coupling factor [Acinetobacter baumannii
           ACICU]
 gi|332874430|ref|ZP_08442333.1| transcription-repair coupling factor [Acinetobacter baumannii
           6014059]
 gi|183209564|gb|ACC56962.1| Transcription-repair coupling factor (superfamily II helicase)
           [Acinetobacter baumannii ACICU]
 gi|322508289|gb|ADX03743.1| Transcription-repair coupling protein [Acinetobacter baumannii
           1656-2]
 gi|332737274|gb|EGJ68198.1| transcription-repair coupling factor [Acinetobacter baumannii
           6014059]
          Length = 1153

 Score =  120 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 63/465 (13%), Positives = 148/465 (31%), Gaps = 65/465 (13%)

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
           ++        +++A N    AQL SE + +     +      ++    +   P  D   E
Sbjct: 36  EIATQHSSLLVLVARNNQHVAQLESELEFYGVKPTI---FPDWEILPYDRLSPHQDIVSE 92

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           + + ++              + +   +++S+ +    +            +K+G   + +
Sbjct: 93  RLAILSN-------------MPQQGVLLISASTLAQRVAPYSWVLGEHFDIKVGQKFDLE 139

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +    LV+  Y   D     G F V G  ++IF +  ++   R+ +F ++I+ +  F P 
Sbjct: 140 QQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIF-ASGQESPIRIDLFDDEIDSLKFFDPE 198

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           T +    +++  +     +                  + R  E        +        
Sbjct: 199 TQRTTTTLKSFTVLPAKEFPLKEGRSV---------FRDRYSEFFPTANPKK-------- 241

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT-----IP 481
               + +    +   IE Y      +   +       Y+P++ ++       T       
Sbjct: 242 NPIYQDVLDGIASPGIEFYLPLFFNKEQMQSQSMFTTYLPKNCIVITTNDIDTDLTSFWK 301

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           ++   Y    H           L    ++      ++  +     +VSA      +E+  
Sbjct: 302 EVMRRYEDRRHNMDQPILAPEELFISPNHLLSALNQFPRM-----LVSA----ETIEEKA 352

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G +  +  +P  L   P + +     V+   DE N        +LL   +    E L + 
Sbjct: 353 GALNLKTEQPPKLPVDPKKEKPFSA-VKKYIDEANHP------VLLVAESAGRRESLKDA 405

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L           S +  +  +E     ++ +F + +    L  GL
Sbjct: 406 LR----------SSLGEIPNVENFEQFQISQFAIAITNAPLDRGL 440



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 95/259 (36%), Gaps = 52/259 (20%)

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
             +  L+ VDE H    +     +        L      +P     R L    ++ +R  
Sbjct: 725 FKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIP-----RTLNMA-FSGMRDL 778

Query: 525 TIVVSATP-------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN- 576
           +I+  ATP        ++  E     I E I+R                QV  +++E+  
Sbjct: 779 SII--ATPPARRLAVKTFVQEHTDASIKEAILRELLR----------GGQVYFLHNEVET 826

Query: 577 -LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A + +R+L+                E  + V   H +++  E  ++++     +++V
Sbjct: 827 IERAAENIRVLV---------------PEARVAVA--HGQMRERELEQVMQQFYHKEYNV 869

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +  
Sbjct: 870 LVCSTIIETGIDVPNANTILIERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVP 922

Query: 696 SIQLAIDETTRRR-EKQLE 713
           SI+    +  +R    Q  
Sbjct: 923 SIKHLKGDAEKRLDAIQRA 941



 Score = 39.3 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 88/232 (37%), Gaps = 32/232 (13%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q G ++ + V T    ++  E   +   +  +R+  +         
Sbjct: 638 GKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTH 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++ I DL  GK D++VG + LL+E +   + GL+ + +  + G    +        +A R
Sbjct: 698 LKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMVVDEEHRFGVRDKERI------KALR 751

Query: 681 NVNSKVILYADTITKSIQLA---------IDETTRRREKQLEHNKKHNINPQSVKEKIME 731
                + L A  I +++ +A         I     RR       ++H     S+KE I+ 
Sbjct: 752 ADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEH--TDASIKEAILR 809

Query: 732 VI----------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
            +          + +   + A  NI +   +  ++   G+   + L + M  
Sbjct: 810 ELLRGGQVYFLHNEVETIERAAENIRVLVPEARVAVAHGQMRERELEQVMQQ 861


>gi|239622194|ref|ZP_04665225.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239514191|gb|EEQ54058.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 1194

 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 96/257 (37%), Gaps = 24/257 (9%)

Query: 153 QPAAIAQLLKG---IHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKIL 205
           Q     +L  G           +L G+    +    A + +       +P +++  +   
Sbjct: 24  QDKTFLKLAAGDIEASDDVDNSVLAGIPEGLRPALAAAIGQGVAGKPGKPVVLVVASGRE 83

Query: 206 AAQLYSEFKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SAT 263
           A +     ++++  +  +      ++    E   PR DT   + +       R++H S T
Sbjct: 84  AEETVGSLRSWYDGDPNDIAQLEAWETLPHERLSPRADTVASRMAVF----RRLKHPSDT 139

Query: 264 RSLLERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            S+      +V+   S I     G+G VE          +G+ +   E    L++  Y R
Sbjct: 140 DSMFGPIRILVMPIRSLIQPVVQGLGDVEPLV-----FTVGEDLPLDEAAKRLIENAYTR 194

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIK 378
            D+ + RG F V G  +++FP        R+  FG++I+ I EF+    +   + ++TI 
Sbjct: 195 VDLVMDRGEFAVRGGILDVFPP-TAPHPVRIEFFGDEIDTIKEFHASDQRTYGDGLKTIW 253

Query: 379 IYANSHYVTPRPTLNTA 395
             A             A
Sbjct: 254 ATACRELQLTDAVRTRA 270



 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 789 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAVRRELLRG 847

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +    + + ++           H ++   +  +IIRD      DVLV   
Sbjct: 848 GQVFYVHNRVQDISSIADKIHTLVPEAHVGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTT 907

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    +K +  
Sbjct: 908 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPSKPMTE 962


>gi|23335259|ref|ZP_00120496.1| COG1197: Transcription-repair coupling factor (superfamily II
           helicase) [Bifidobacterium longum DJO10A]
 gi|189439640|ref|YP_001954721.1| transcription-repair coupling factor (superfamily II helicase)
           [Bifidobacterium longum DJO10A]
 gi|189428075|gb|ACD98223.1| Transcription-repair coupling factor (superfamily II helicase)
           [Bifidobacterium longum DJO10A]
          Length = 1194

 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 96/257 (37%), Gaps = 24/257 (9%)

Query: 153 QPAAIAQLLKG---IHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKIL 205
           Q     +L  G           +L G+    +    A + +       +P +++  +   
Sbjct: 24  QDKTFLKLAAGDIEASDDVDNSVLAGIPEGLRPALAAAIGQGVAGKPGKPVVLVVASGRE 83

Query: 206 AAQLYSEFKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SAT 263
           A +     ++++  +  +      ++    E   PR DT   + +       R++H S T
Sbjct: 84  AEETVGSLRSWYDGDPNDIAQLEAWETLPHERLSPRADTVASRMAVF----RRLKHPSDT 139

Query: 264 RSLLERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            S+      +V+   S I     G+G VE          +G+ +   E    L++  Y R
Sbjct: 140 DSMFGPIRILVMPIRSLIQPVVQGLGDVEPLV-----FTVGEDLPLDEAAKRLIENAYTR 194

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIK 378
            D+ + RG F V G  +++FP        R+  FG++I+ I EF+    +   + ++TI 
Sbjct: 195 VDLVMDRGEFAVRGGILDVFPP-TAPHPVRIEFFGDEIDTIKEFHASDQRTYGDGLKTIW 253

Query: 379 IYANSHYVTPRPTLNTA 395
             A             A
Sbjct: 254 ATACRELQLTDAVRTRA 270



 Score = 41.6 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 789 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAVRRELLRG 847

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +    + + ++           H ++   +  +IIRD      DVLV   
Sbjct: 848 GQVFYVHNRVQDISSIADKIHTLVPEAHVGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTT 907

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    +K +  
Sbjct: 908 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPSKPMTE 962


>gi|260555151|ref|ZP_05827372.1| transcription-repair coupling factor [Acinetobacter baumannii ATCC
           19606]
 gi|260411693|gb|EEX04990.1| transcription-repair coupling factor [Acinetobacter baumannii ATCC
           19606]
          Length = 1153

 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 62/465 (13%), Positives = 148/465 (31%), Gaps = 65/465 (13%)

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
           ++        +++A N    AQL SE + +     +      ++    +   P  D   E
Sbjct: 36  EIATQHSSLLVLVARNNQHVAQLESELEFYGVKPTI---FPDWEILPYDRLSPHQDIVSE 92

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           + + ++              + +   +++S+ +    +            +K+G   + +
Sbjct: 93  RLAILSN-------------MPQQGVLLISASTLAQRVAPYSWVLGEHFDIKVGQKFDLE 139

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +    LV+  Y   D     G F V G  ++IF +  ++   R+ +F ++I+ +  F P 
Sbjct: 140 QQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIF-ASGQESPIRIDLFDDEIDSLKFFDPE 198

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           T +    +++  +     +                  + R  E        +        
Sbjct: 199 TQRTTTTLKSFTVLPAKEFPLKEGRSV---------FRDRYSEFFPTANPKK-------- 241

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD-----ESHVTIP 481
               + +    +   IE Y      +   +       Y+P++ ++        +      
Sbjct: 242 NPIYQDVLDGIASPGIEFYLPLFFDKEQMQSQSMFTTYLPKNCIVITTNDIDIDLTNFWK 301

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           ++   Y    H           L    ++      ++  +     +VSA      +E+  
Sbjct: 302 EVMRRYEDRRHNMDQPILAPEELFISPNHLLSALNQFPRM-----LVSA----ETIEEKA 352

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G +  +  +P  L   P + +     V+   DE N        +LL   +    E L + 
Sbjct: 353 GALNLKTEQPPKLPVDPKKEKPFSA-VKKYIDEANHP------VLLVAESAGRRESLKDA 405

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L           S +  +  +E     ++ +F + +    L  GL
Sbjct: 406 LR----------SSLGEIPNVENFEQFQISQFAIAITNAPLDRGL 440



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 95/259 (36%), Gaps = 52/259 (20%)

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
             +  L+ VDE H    +     +        L      +P     R L    ++ +R  
Sbjct: 725 FKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIP-----RTLNMA-FSGMRDL 778

Query: 525 TIVVSATP-------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN- 576
           +I+  ATP        ++  E     I E I+R                QV  +++E+  
Sbjct: 779 SII--ATPPARRLAVKTFVQEHTDASIKEAILRELLR----------GGQVYFLHNEVET 826

Query: 577 -LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A + +R+L+                E  + V   H +++  E  ++++     +++V
Sbjct: 827 IERAAENIRVLV---------------PEARVAVA--HGQMRERELEQVMQQFYHKEYNV 869

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +  
Sbjct: 870 LVCSTIIETGIDVPNANTILIERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVP 922

Query: 696 SIQLAIDETTRRR-EKQLE 713
           SI+    +  +R    Q  
Sbjct: 923 SIKHLKGDAEKRLDAIQRA 941



 Score = 39.3 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 88/232 (37%), Gaps = 32/232 (13%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q G ++ + V T    ++  E   +   +  +R+  +         
Sbjct: 638 GKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTH 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++ I DL  GK D++VG + LL+E +   + GL+ + +  + G    +        +A R
Sbjct: 698 LKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMVVDEEHRFGVRDKERI------KALR 751

Query: 681 NVNSKVILYADTITKSIQLA---------IDETTRRREKQLEHNKKHNINPQSVKEKIME 731
                + L A  I +++ +A         I     RR       ++H     S+KE I+ 
Sbjct: 752 ADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEH--TDASIKEAILR 809

Query: 732 VI----------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
            +          + +   + A  NI +   +  ++   G+   + L + M  
Sbjct: 810 ELLRGGQVYFLHNEVETIERAAENIRVLVPEARVAVAHGQMRERELEQVMQQ 861


>gi|312133038|ref|YP_004000377.1| mfd [Bifidobacterium longum subsp. longum BBMN68]
 gi|311774027|gb|ADQ03515.1| Mfd [Bifidobacterium longum subsp. longum BBMN68]
          Length = 1194

 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 96/257 (37%), Gaps = 24/257 (9%)

Query: 153 QPAAIAQLLKG---IHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKIL 205
           Q     +L  G           +L G+    +    A + +       +P +++  +   
Sbjct: 24  QDKTFLKLAAGDIEASDDVDNSVLAGIPEGLRPALAAAIGQGVAGKPGKPVVLVVASGRE 83

Query: 206 AAQLYSEFKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SAT 263
           A +     ++++  +  +      ++    E   PR DT   + +       R++H S T
Sbjct: 84  AEETVGSLRSWYDGDPNDIAQLEAWETLPHERLSPRADTVASRMAVF----RRLKHPSDT 139

Query: 264 RSLLERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            S+      +V+   S I     G+G VE          +G+ +   E    L++  Y R
Sbjct: 140 DSMFGPIRILVMPIRSLIQPVVQGLGDVEPLV-----FTVGEDLPLDEAAKRLIENAYTR 194

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIK 378
            D+ + RG F V G  +++FP        R+  FG++I+ I EF+    +   + ++TI 
Sbjct: 195 VDLVMDRGEFAVRGGILDVFPP-TAPHPVRIEFFGDEIDTIKEFHASDQRTYGDGLKTIW 253

Query: 379 IYANSHYVTPRPTLNTA 395
             A             A
Sbjct: 254 ATACRELQLTDAVRTRA 270



 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 789 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAVRRELLRG 847

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +    + + ++           H ++   +  +IIRD      DVLV   
Sbjct: 848 GQVFYVHNRVQDISSIADKIHTLVPEAHVGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTT 907

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    +K +  
Sbjct: 908 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPSKPMTE 962


>gi|229496199|ref|ZP_04389919.1| transcription-repair coupling factor [Porphyromonas endodontalis
           ATCC 35406]
 gi|229316777|gb|EEN82690.1| transcription-repair coupling factor [Porphyromonas endodontalis
           ATCC 35406]
          Length = 1123

 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 93/225 (41%), Gaps = 17/225 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV-IEAMQRPAIVMAPNKILAAQLYSEFKN 215
           +AQ L  I + E ++   GVTGS     +A + I+  ++P +++A ++  A  LYS+   
Sbjct: 28  LAQTLSSIQTGEAIR-YKGVTGSALAVIVAGLHIQETKQPLLIVANDEESAGYLYSDLIQ 86

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
                +V +F S Y  +              +    +   + +R      L   +  I+V
Sbjct: 87  ILGRESVLFFPSSYRRHI-------------RYGHTDAGSEVLRSELIARLSLGDCPIIV 133

Query: 276 SSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           S    +  GI +       +  L++G  V++++L +  V + +   D     G     G 
Sbjct: 134 SHPFALAEGIPNANEVETHVRSLRVGQEVDRQQLRTWFVDEGFTITDYVYQPGEVAFRGS 193

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            ++IF ++  +   R+  F  +IE I  F   T      +E + +
Sbjct: 194 IVDIF-AYNAERPIRLDFFDTEIESIRSFDIDTQLSHEKLEEVTL 237



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 98/280 (35%), Gaps = 31/280 (11%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ +SATP    L+        +   +  P        E+       E + + IN    +
Sbjct: 716 TLTMSATPIPRTLQFSLMGTRDLSNILTPPRNRYPVATEVIRFDP--EAIAEAINFELSR 773

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++          E +   + +R  + R+   H  +   E  ++       +FDVLV  
Sbjct: 774 NGQVFFVHNRIDDIEGIARMIQQRIPDCRIAVGHGRMNQTELEQLFVSFSQHEFDVLVST 833

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+     + I  A   G L     L   +GR++R        +   IT  + L
Sbjct: 834 TIVENGIDVSNANTIIIDSAHHFG-LSDLHQLRGRVGRSSRKA------FCYLITPPMDL 886

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK-- 757
            + E ++RR + +E           ++  + + +D     +   +  S     L      
Sbjct: 887 -LPEASQRRLRAIESYSDLG---SGIRIAMQD-LDIRGAGNVFGSEQSGFIADLGFDAYH 941

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSP 797
           K     ++ ++++         FEE    RDE   L +  
Sbjct: 942 KVFDEAVREVKRE--------EFEE--LFRDESAELAAEE 971



 Score = 39.3 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A     ++ + V T     +     +E L +  +RV Y        E 
Sbjct: 598 GKTEIAIRAAFKAVADSKQVAVLVPTTILAYQHYRTFSERLKDLPVRVAYFSRAQSAKES 657

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEG 663
            +++ DL+ GK D++VG + L+ + +   + GL+ I +  K G
Sbjct: 658 KQLLEDLKEGKIDIVVGTHRLVGKNVQFKDLGLLVIDEEQKFG 700


>gi|322688798|ref|YP_004208532.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460134|dbj|BAJ70754.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 1194

 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 96/257 (37%), Gaps = 24/257 (9%)

Query: 153 QPAAIAQLLKG---IHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKIL 205
           Q     +L  G           +L G+    +    A + +       +P +++  +   
Sbjct: 24  QDKTFLKLAAGDIEASDDVDNSVLAGIPEGLRPALAAAIGQGVAGKPGKPVVLVVASGRE 83

Query: 206 AAQLYSEFKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SAT 263
           A +     ++++  +  +      ++    E   PR DT   + +       R++H S T
Sbjct: 84  AEETVGSLRSWYDGDPNDIAQLEAWETLPHERLSPRADTVASRMAVF----RRLKHPSDT 139

Query: 264 RSLLERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            S+      +V+   S I     G+G VE          +G+ +   E    L++  Y R
Sbjct: 140 DSMFGPIRILVMPIRSLIQPVVQGLGDVEPLV-----FTVGEDLPLDEAAKRLIENAYTR 194

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIK 378
            D+ + RG F V G  +++FP        R+  FG++I+ I EF+    +   + ++TI 
Sbjct: 195 VDLVMDRGEFAVRGGILDVFPP-TAPHPVRIEFFGDEIDTIKEFHASDQRTYGDGLKTIW 253

Query: 379 IYANSHYVTPRPTLNTA 395
             A             A
Sbjct: 254 ATACRELQLTDAVRTRA 270



 Score = 41.6 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 789 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAVRRELLRG 847

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +    + + ++           H ++   +  +IIRD      DVLV   
Sbjct: 848 GQVFYVHNRVQDISSIADKIHTLVPEAHVGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTT 907

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    +K +  
Sbjct: 908 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPSKPMTE 962


>gi|183221209|ref|YP_001839205.1| transcription-repair coupling factor [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911300|ref|YP_001962855.1| transcription-repair coupling factor [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775976|gb|ABZ94277.1| Transcription-repair coupling factor [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779631|gb|ABZ97929.1| Transcription-repair coupling factor (TRCF; ATP-dependent helicase
           Mfd) [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 1140

 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 91/513 (17%), Positives = 174/513 (33%), Gaps = 73/513 (14%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEA--MQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
            ++E +  L G+  S  +F  + +      ++  +V+ P    A     E  +F     +
Sbjct: 18  EAKETLVNLSGIPESAHSFVTSTLYGNKLTKKTFVVVLPTNQEAESFCRELLSFLNKEEI 77

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC-I 281
            +F             P  +    + +    +  R R      +L  N  +VV+SV+  +
Sbjct: 78  YFF-------------PGPENIPYEYTKWQVEWKRDRILTINQILAGNRSLVVTSVAAFL 124

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   ES     + LK+G     + LL  L++  Y R+++    G F + G  ++I+  
Sbjct: 125 RKLPEKESLKGKSITLKLGVDFPLEALLVELIQLGYHREEVCEQFGHFSLKGGILDIYTP 184

Query: 342 HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
           +L +   R+  FG+ ++EI  F P T + I+ ++ + I A +  +  +  L      + E
Sbjct: 185 YLTN-PVRIDFFGDTVDEIRTFDPNTQKSIQKIDEVLITAANETIVTKSELEHYHNLLNE 243

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
             + RL         +  + L                          L  +  G      
Sbjct: 244 YSEKRLP--IDSEIEIIEEHLP-------------------------LVRKQEG-----F 271

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE-EWNC 520
            ++ PE  +L   +   T  +  GM R          E    LP       L F  EW  
Sbjct: 272 LDFFPEPPVLIFPKFQETKERSFGMEREYNTLFEKKKEESLCLPP---TELLSFGMEWKS 328

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL--A 578
           L         TPG       Q  ++  ++      DP  E++  R ++ +  +      A
Sbjct: 329 LTSEE-----TPGI------QFSLLPSLLNNFS-FDPITEVKGFRGKIREAKEYFLELLA 376

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
              G  I +T         L     E  +    +    +   R      ++ G   +L  
Sbjct: 377 LNPGHSIFITSSFSAQMMRLKGLFSETEVNT--IGENSEDPIR-FPFESIQPGIHLIL-- 431

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
            + L+ G  +   G+    D D  G    + + 
Sbjct: 432 -SDLKRGFHLVNEGIFVFTDNDLFGRQYKRKTR 463



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 7/178 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      I E  II         VE          + + I    ++G 
Sbjct: 751 VLTLTATPIPRTLHMALTGIRELSIISTAPKNRQSVETYVLEEDDTLIQEAIRKEIERGG 810

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E+   Y+      + V  +H ++   E  E + +    K+D+LV   +
Sbjct: 811 QVFYLYNRVESIEEEASYVRSLVPEVSVGILHGQLTEDEIEETLVEFYERKYDILVTTTI 870

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  G+D+P    + +  AD  G  +    L Q  GR  R+             K +  
Sbjct: 871 IESGIDMPNVNTLIVKKADMFGLSQ----LYQIRGRVGRSDRKAYAYMFYPSKKLMTE 924


>gi|332865867|ref|ZP_08436651.1| putative transcription-repair coupling factor [Acinetobacter
           baumannii 6013113]
 gi|332735079|gb|EGJ66164.1| putative transcription-repair coupling factor [Acinetobacter
           baumannii 6013113]
          Length = 869

 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 62/465 (13%), Positives = 149/465 (32%), Gaps = 65/465 (13%)

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
           ++        +++A N    AQL SE + +     +      ++    +   P  D   E
Sbjct: 36  EIATQYSSLLVLVARNNQHVAQLESELEFYGVKPTI---FPDWEILPYDRLSPHQDIVSE 92

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           + + ++              + +   +++S+ +    +            +K+G   + +
Sbjct: 93  RLAILSN-------------MPQQGVLLISASTLAQRVAPYSWVLGEHFDIKVGQKFDLE 139

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +    LV+  Y   D     G F V G  ++IF +  ++   R+ +F ++I+ +  F P 
Sbjct: 140 QQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIF-ASGQESPIRIDLFDDEIDSLKFFDPE 198

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           T +    +++  +     +                  + R  E        +        
Sbjct: 199 TQRTTTTLKSFTVLPAKEFPLKEGRSV---------FRDRYSEFFPTANPKK-------- 241

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD-----ESHVTIP 481
               + +    +   IE Y      +   +       Y+P++ ++  +     +      
Sbjct: 242 NPIYQDVLDGIASPGIEFYLPLFFDKEQMQSQSMFTTYLPKNCIVITNSDIDTDLTNFWK 301

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           ++   Y    H           L    ++      ++  +     +VSA      +E+  
Sbjct: 302 EVMRRYEDRRHNMDQPILAPEELFISPNHLLSALNQFPRM-----LVSA----ETIEEKA 352

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G +  +  +P  L   P + +     V+   DE N        +LL   +    E L + 
Sbjct: 353 GALNLKTEQPPKLPVDPKKEKPFSA-VKKYIDEANHP------VLLVAESAGRRESLKDA 405

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L           S +  +  +E     ++ +F + +    L  GL
Sbjct: 406 LR----------SSLGEIPNVENFEQFQISQFAIAITNAPLDRGL 440



 Score = 39.3 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 88/232 (37%), Gaps = 32/232 (13%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q G ++ + V T    ++  E   +   +  +R+  +         
Sbjct: 638 GKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTH 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++ I DL  GK D++VG + LL+E +   + GL+ + +  + G    +        +A R
Sbjct: 698 LKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMVVDEEHRFGVRDKERI------KALR 751

Query: 681 NVNSKVILYADTITKSIQLA---------IDETTRRREKQLEHNKKHNINPQSVKEKIME 731
                + L A  I +++ +A         I     RR       ++H     S+KE I+ 
Sbjct: 752 ADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEH--TDASIKEAILR 809

Query: 732 VI----------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
            +          + +   + A  NI +   +  ++   G+   + L + M  
Sbjct: 810 ELLRGGQVYFLHNEVETIERAAENIRVLVPEARVAVAHGQMRERELEQVMQQ 861


>gi|23465592|ref|NP_696195.1| transcription-repair coupling factor [Bifidobacterium longum
           NCC2705]
 gi|23326260|gb|AAN24831.1| transcription-repair coupling factor [Bifidobacterium longum
           NCC2705]
          Length = 1194

 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 96/257 (37%), Gaps = 24/257 (9%)

Query: 153 QPAAIAQLLKG---IHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKIL 205
           Q     +L  G           +L G+    +    A + +       +P +++  +   
Sbjct: 24  QDKTFLKLAAGDIEASDDVDNSVLAGIPEGLRPALAAAIGQGVAGKPGKPVVLVVASGRE 83

Query: 206 AAQLYSEFKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SAT 263
           A +     ++++  +  +      ++    E   PR DT   + +       R++H S T
Sbjct: 84  AEETVGSLRSWYDGDPNDIAQLEAWETLPHERLSPRADTVASRMAVF----RRLKHPSDT 139

Query: 264 RSLLERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            S+      +V+   S I     G+G VE          +G+ +   E    L++  Y R
Sbjct: 140 DSMFGPIRILVMPIRSLIQPVVQGLGDVEPLV-----FTVGEDLPLDEAAKRLIENAYTR 194

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIK 378
            D+ + RG F V G  +++FP        R+  FG++I+ I EF+    +   + ++TI 
Sbjct: 195 VDLVMDRGEFAVRGGILDVFPP-TAPHPVRIEFFGDEIDTIKEFHASDQRTYGDGLKTIW 253

Query: 379 IYANSHYVTPRPTLNTA 395
             A             A
Sbjct: 254 ATACRELQLTDAVRTRA 270



 Score = 40.8 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 789 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAVRRELLRG 847

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +    + + ++           H ++   +  +IIRD      DVLV   
Sbjct: 848 GQVFYVHNRVQDISSIADKIHTLVPEAHVGIAHGKMGEKQLDQIIRDFWHRGIDVLVCTT 907

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    +K +  
Sbjct: 908 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPSKPMTE 962


>gi|322690788|ref|YP_004220358.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320455644|dbj|BAJ66266.1| transcription-repair coupling factor [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 1194

 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 96/257 (37%), Gaps = 24/257 (9%)

Query: 153 QPAAIAQLLKG---IHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKIL 205
           Q     +L  G           +L G+    +    A + +       +P +++  +   
Sbjct: 24  QDKTFLKLAAGDIEASDDVDNSVLAGIPEGLRPALAAAIGQGVAGKPGKPVVLVVASGRE 83

Query: 206 AAQLYSEFKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SAT 263
           A +     ++++  +  +      ++    E   PR DT   + +       R++H S T
Sbjct: 84  AEETVGSLRSWYDGDPNDIAQLEAWETLPHERLSPRADTVASRMAVF----RRLKHPSDT 139

Query: 264 RSLLERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            S+      +V+   S I     G+G VE          +G+ +   E    L++  Y R
Sbjct: 140 DSMFGPIRILVMPIRSLIQPVVQGLGDVEPLV-----FTVGEDLPLDEAAKRLIENAYTR 194

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIK 378
            D+ + RG F V G  +++FP        R+  FG++I+ I EF+    +   + ++TI 
Sbjct: 195 VDLVMDRGEFAVRGGILDVFPP-TAPHPVRIEFFGDEIDTIKEFHASDQRTYGDGLKTIW 253

Query: 379 IYANSHYVTPRPTLNTA 395
             A             A
Sbjct: 254 ATACRELQLTDAVRTRA 270



 Score = 41.6 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 789 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAVRRELLRG 847

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +    + + ++           H ++   +  +IIRD      DVLV   
Sbjct: 848 GQVFYVHNRVQDISSIADKIHTLVPEAHVGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTT 907

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    +K +  
Sbjct: 908 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPSKPMTE 962


>gi|240850603|ref|YP_002972003.1| transcription repair coupling factor [Bartonella grahamii as4aup]
 gi|240267726|gb|ACS51314.1| transcription repair coupling factor [Bartonella grahamii as4aup]
          Length = 1166

 Score =  120 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 80/524 (15%), Positives = 169/524 (32%), Gaps = 65/524 (12%)

Query: 164 IHSREKVQLLL-GVTGSGKTFTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           I     V ++  GV    + F +AK+   +   +P I +  +      L        P+ 
Sbjct: 9   IPQNNSVHMIFDGVPDGFEAFALAKLSSEIAQGKPLIYVVRDGTKIVHLQQVLNFIEPNL 68

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
            +  F ++ D    +   P         + +  ++  + H A          I+ ++ + 
Sbjct: 69  PILQFPAW-DCLPYDRVSPG-------IAVMARRLSALAHIANLRKDPHPAIILTTANAI 120

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF- 339
           +  +   E     ++  ++G       L+  L    ++R  +    G F V G  ++IF 
Sbjct: 121 MQKLPPREMIEAQLIHARVGQRNNMGNLIQFLETNGFERVTVVRDVGEFAVRGGILDIFS 180

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P  +E    R+  FG+ +E I  F P + +       + +   S  V     ++      
Sbjct: 181 PMDVE--PLRLDFFGDTLESIRIFDPESQRTTGQKTELLLQGMSEVVLTPERISRFKSN- 237

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
                         G       + Q+     E +        +E++  +       E   
Sbjct: 238 ---------YTRTFG-------VSQKNNMLYEAIAQGRRFAGMEHWLPFFY-----ENLD 276

Query: 460 TLFEY---IP-------EDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
           + F++   +P       E++ +   E +  I       +   + +     Y    PS   
Sbjct: 277 SFFDHCGNLPIVFEHLIEEAFI---ERYRLIEDYYNARKERENDEKNSTSYHPIDPSLFY 333

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
             P R  E        I  S       LE+       +        D   E  +    V 
Sbjct: 334 LTPERVLEGVQQSSQRIDFSPFNIPQSLEKTVIHTNVK-----QGYDFVKERNAQEKNVF 388

Query: 570 -DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             V D I      G ++LL   ++     L + L E           +K ++  + ++ +
Sbjct: 389 SSVIDHIASLRTAGKKVLLACWSEGSLNRLLQVLDEHG---------LKKIDVAKSLQTV 439

Query: 629 RLGKFD-VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +    D +L  + ++  G +  +  ++A  D   + F+RS    
Sbjct: 440 KATPRDRILAAVIMIEHGFEAEDLAVIAEQDILGDRFIRSPKRR 483



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 76/191 (39%), Gaps = 13/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L      + E  +  T  +D  V +R+  +  + +   + +     +
Sbjct: 768 HVLTLSATPIPRTLGLALSGVRELSLITTPPIDRMV-VRTFISPFDALVIRETLLREYYR 826

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +             + EYL      ++++  H ++   +  +I+     G++DVL+  
Sbjct: 827 GGQSFYVCPRISDLAFVEEYLKTHVPELKFVVAHGQMPAGQLDDIMNAFYDGQYDVLLST 886

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  A+  G     ++L Q  GR  R+      L+     K +  
Sbjct: 887 TIIESGLDIPTANTLIVHRAEMFGL----SALYQLRGRVGRSKQRAYALFTFPAGKVLTA 942

Query: 700 AIDETTRRREK 710
           A D    RR K
Sbjct: 943 AAD----RRLK 949


>gi|317481857|ref|ZP_07940884.1| transcription-repair coupling factor [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316916648|gb|EFV38043.1| transcription-repair coupling factor [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 1194

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 96/257 (37%), Gaps = 24/257 (9%)

Query: 153 QPAAIAQLLKG---IHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKIL 205
           Q     +L  G           +L G+    +    A + +       +P +++  +   
Sbjct: 24  QDKTFLKLAAGDIEASDDVDNSVLAGIPEGLRPALAAAIGQGVAGKPGKPVVLVVASGRE 83

Query: 206 AAQLYSEFKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SAT 263
           A +     ++++  +  +      ++    E   PR DT   + +       R++H S T
Sbjct: 84  AEETVGSLRSWYDGDPNDIAQLEAWETLPHERLSPRADTVASRMAVF----RRLKHPSDT 139

Query: 264 RSLLERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            S+      +V+   S I     G+G VE          +G+ +   E    L++  Y R
Sbjct: 140 DSMFGSIRILVMPIRSLIQPVVQGLGDVEPLV-----FTVGEDLPLDEAAKRLIENAYTR 194

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIK 378
            D+ + RG F V G  +++FP        R+  FG++I+ I EF+    +   + ++TI 
Sbjct: 195 VDLVMDRGEFAVRGGILDVFPP-TAPHPVRIEFFGDEIDTIKEFHASDQRTYGDGLKTIW 253

Query: 379 IYANSHYVTPRPTLNTA 395
             A             A
Sbjct: 254 ATACRELQLTDAVRTRA 270



 Score = 41.6 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 789 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAVRRELLRG 847

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +    + + ++           H ++   +  +IIRD      DVLV   
Sbjct: 848 GQVFYVHNRVQDISSIADKIHTLVPEAHVGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTT 907

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    +K +  
Sbjct: 908 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPSKPMTE 962


>gi|260433551|ref|ZP_05787522.1| transcription-repair coupling factor [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417379|gb|EEX10638.1| transcription-repair coupling factor [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 1152

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 107/318 (33%), Gaps = 52/318 (16%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           + G       QL+L              +     P + +A +   A  + +  + F P  
Sbjct: 9   VGGAPEGFDAQLVL------------NEVARSGGPVLHVARDDKRAEAMRAALRFFAPDM 56

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL---LERNDCIVVSS 277
            V  F             P  D       S N  I   R +   +L   +     ++ + 
Sbjct: 57  PVILF-------------PGWDCLPYDRVSPNPDIAAARVATLAALVHQMPERFVLLTTL 103

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            +    + + +   Q     ++G  +++  L   LV+  + +    +  G + V G  I+
Sbjct: 104 NAATQRVPARDVLRQAAFTARVGQRIDEAALRDFLVRMGFSQSPTVMEPGDYAVRGGIID 163

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP   E    R+ +FG+ ++    F P T +    ++ +++   S  +     +    +
Sbjct: 164 IFPP-GEAGPVRLDLFGDVLDGARRFDPATQRTTEKLDLVELAPVSEVILDEAAITRFRQ 222

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
             + E           G                E +      Q +E++  +       E 
Sbjct: 223 NYRIE-------FGAAGTD----------DPLYEAVSAGRKHQGMEHWLPFFH-----EK 260

Query: 458 PPTLFEYIPEDSLLFVDE 475
             TLF+Y+P D+ + +D+
Sbjct: 261 LETLFDYLP-DATITLDD 277



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 74/187 (39%), Gaps = 9/187 (4%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 746 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA-IRTYVSEFDAVTIREALLREHYR 804

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ E+L E+   + Y+  H ++   E  + +     GK+D+L+  
Sbjct: 805 GGQSFYVVPRISDLPEIEEFLKEQLPELTYVVAHGQMAAGELDDRMNAFYDGKYDILLAT 864

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+               +  
Sbjct: 865 TIVESGLDIPTANTMVVHRADMFGLAQ----LYQIRGRVGRSKTRAYAYLTTKPRARLTP 920

Query: 700 AIDETTR 706
           A ++  R
Sbjct: 921 AAEKRLR 927



 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 102/308 (33%), Gaps = 60/308 (19%)

Query: 117 LKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLG 175
           L+   I  P      +   +    F     Y  + DQ  AIA +++ +HS     +L+ G
Sbjct: 573 LRKAPIMDPP----PHAWEEFSARF----PYQETEDQLRAIADVMEDLHSGTPMDRLICG 624

Query: 176 VTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
             G GKT      A V         V+AP  +LA Q  + FK+ F    +E         
Sbjct: 625 DVGFGKTEVAMRAAFVAAMSGLQVAVIAPTTLLARQHAASFKDRFRGFPLEVRQLSRFVS 684

Query: 233 QPEAYVPRT-------DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
             EA   R        D  I   + + + I          +++      V+    +  + 
Sbjct: 685 AKEAQQTREGLAKGTVDIVIGTHALLAKGIRFQNLGLL--IIDEEQHFGVAHKERLKQL- 741

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
                   +  L +  +   + L  SL                  V  D   I    ++ 
Sbjct: 742 -----RSDVHVLTLTATPIPRTLQLSLTG----------------VR-DLSIIGTPPVDR 779

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRN--VETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           +A R          +SEF  +T   IR   +        S YV PR    + +  I+E L
Sbjct: 780 LAIR--------TYVSEFDAVT---IREALLREHYRGGQSFYVVPR---ISDLPEIEEFL 825

Query: 404 KMRLIELE 411
           K +L EL 
Sbjct: 826 KEQLPELT 833


>gi|302039582|ref|YP_003799904.1| transcription-repair-coupling factor [Candidatus Nitrospira
           defluvii]
 gi|300607646|emb|CBK43979.1| Transcription-repair-coupling factor [Candidatus Nitrospira
           defluvii]
          Length = 1157

 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 94/236 (39%), Gaps = 18/236 (7%)

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ------RPAIVMAPNKILAAQLYSEFKN 215
             + +      L+G+ GS   F +A +  ++       R  +++A     A +LY +   
Sbjct: 18  DALRNGTGKPCLMGLHGSTAGFGLALLTHSLPSQPLADRSWLIVAKTDDEAERLYRDTLF 77

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
           F             D     A  P+ +T   + +  +  +   R      L      ++ 
Sbjct: 78  FRT-----LCGQSGDDL---ALFPKWETLPYESTVPHIDLVARRMQTLNRLCTTERTVLF 129

Query: 276 SSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +SV  +   +     ++  I+Q +   S+E++ L+SSL++  Y++  +  I G F + G 
Sbjct: 130 TSVPALTQRVLPALVFTDAILQFRPDGSLEREALVSSLLRLGYRKGSVVEIPGEFSIRGG 189

Query: 335 SIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
            ++I+  ++ +    RV   G+ IE I  F P T +    ++   +      + P 
Sbjct: 190 IVDIYSTAYAD--PLRVEFLGDTIESIRFFDPATQKSTDKIKQAWVLPARELIRPE 243



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 73/207 (35%), Gaps = 21/207 (10%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV---- 568
           E    LR     + ++ATP    L+          +R   ++D P   R + RTQV    
Sbjct: 745 ERLKQLRTQVDVLTLTATPIPRTLQMTMAS-----VRDLSIIDTPPSGRLAIRTQVLRFS 799

Query: 569 -EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEII 625
            + + + I     +G +           E +  +L E     R +  H ++ +     ++
Sbjct: 800 EKAIREAILRELGRGGQTYFVHNRVETMERMGAWLQELVPEARIVMAHGQMDSKPLEAVM 859

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
                 + D+L+   +++ G+D+P    + +  AD  G  +    L Q  GR  R     
Sbjct: 860 LKFFHREADILIASAIIQSGIDVPTANTIIVNRADTFGLAQ----LYQLRGRVGRGGEQA 915

Query: 686 VILYADTITKSIQLAIDETTRRREKQL 712
              +      ++    D   R    Q 
Sbjct: 916 YAYFLVPDEGNLSE--DAQKRLTAIQQ 940


>gi|218532420|ref|YP_002423236.1| transcription-repair coupling factor [Methylobacterium
           chloromethanicum CM4]
 gi|218524723|gb|ACK85308.1| transcription-repair coupling factor [Methylobacterium
           chloromethanicum CM4]
          Length = 1196

 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 83/509 (16%), Positives = 156/509 (30%), Gaps = 80/509 (15%)

Query: 188 VIEAMQRPAIVMAPNKILA---AQLYSEFKNFFPHNAVEY-----------FVSYYDYYQ 233
            I+    P +   P+   A   A L       F   AV             F +   +  
Sbjct: 32  AIKRGDSPTLASVPDGFDALVAADLARALSGSFEGPAVLVHVARDSGRSNAFQNALKFVA 91

Query: 234 PEAY---VPRTDTYIEKESSINEQIDRMRHSATRSLL------ERNDCIVVSSVSCIYGI 284
           PE     VP  D       S N  I   R +A   L       E+   +  +  + +  +
Sbjct: 92  PEIEAMSVPAWDCQPYDRVSPNGAIAAQRMTALSRLTRSRSSEEKPRILCTTVNALVQRV 151

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
                 +       IG+ V   ++++ +    + R       G + V G  +++ P  L 
Sbjct: 152 PPRSRVAVETFSAAIGNVVPMDKVVAWVEANGFLRTGTVRDTGEYAVRGGILDLSPPGL- 210

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
               R+  FG+ +E I  F P T + + ++ ++ +   S       T+            
Sbjct: 211 PNPIRLDFFGDTLESIRAFDPETQRTVGSLRSLDLVPMSEVQLTTETIRRF--------- 261

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            R   L   G      RL + ++              +E++          +   TLF+Y
Sbjct: 262 -RQGYLSSFGAATRDDRLYETVS-------EGRRYAGLEHWMPLFY-----DGLDTLFDY 308

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +  D  +  D           +      R A + +Y     + + N       +  L P 
Sbjct: 309 LG-DVPMLFDP---------QVEEAATERLALIQDYFQAREAALKNPQSGVAPYKPLPPR 358

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI---------------RSARTQVE 569
            + +  TP  W+ +   G +V      T   D    I                 A +  +
Sbjct: 359 ALYL--TPNEWKSKVESGTVVRLTPFATPDSDERAVIDCGAKAGRSFAPERADDAASVFD 416

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                I      G  ++L   ++   + L   L +  ++      +   +     +  L+
Sbjct: 417 AAVAHIRDLQASGHHVILGSWSEGSRDRLCGVLTDHGLK------KPTVINTFAAVNALK 470

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD 658
            G  DV V +  L  G  +    +VA  D
Sbjct: 471 RGT-DVAVAVWGLESGFTLDRLAVVAEGD 498



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 73/191 (38%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  T  +D    +R+  T  + +   + +     +
Sbjct: 795 HVLTLSATPIPRTLQLAMTGVRELSIIATPPMDRLA-VRTFVTPFDPLLVREALLRERYR 853

Query: 582 GLRILLTVLTKRMAEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +            ++  +L        V   H ++   +  +++     GK+DVL+  
Sbjct: 854 GGQSFYVAPRIEDLAEVKRFLDTEMPETTVAVAHGQMAAGQLEDVMTAFYEGKYDVLLST 913

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G      +L Q  GR  R   SK   YA   T + + 
Sbjct: 914 TIVESGLDIPTANTLIVHRADMFGL----AALYQLRGRVGR---SKARAYALFTTPANRQ 966

Query: 700 AIDETTRRREK 710
              +  +R + 
Sbjct: 967 LTTQAEQRLKV 977


>gi|163853560|ref|YP_001641603.1| transcription-repair coupling factor [Methylobacterium extorquens
           PA1]
 gi|163665165|gb|ABY32532.1| transcription-repair coupling factor [Methylobacterium extorquens
           PA1]
          Length = 1196

 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 83/509 (16%), Positives = 156/509 (30%), Gaps = 80/509 (15%)

Query: 188 VIEAMQRPAIVMAPNKILA---AQLYSEFKNFFPHNAVEY-----------FVSYYDYYQ 233
            I+    P +   P+   A   A L       F   AV             F +   +  
Sbjct: 32  AIKRGDSPTLASVPDGFDALVAADLARALSGSFEGPAVLVHVARDSGRSNAFQNALKFVA 91

Query: 234 PEAY---VPRTDTYIEKESSINEQIDRMRHSATRSLL------ERNDCIVVSSVSCIYGI 284
           PE     VP  D       S N  I   R +A   L       E+   +  +  + +  +
Sbjct: 92  PEIEAMSVPAWDCQPYDRVSPNGAIAAQRMTALSRLTRSRSSEEKPRILCTTVNALVQRV 151

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
                 +       IG+ V   ++++ +    + R       G + V G  +++ P  L 
Sbjct: 152 PPRSRVAVETFSAAIGNVVPMDKVVAWVEANGFLRTGTVRDTGEYAVRGGILDLSPPGL- 210

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
               R+  FG+ +E I  F P T + + ++ ++ +   S       T+            
Sbjct: 211 PNPIRLDFFGDTLESIRAFDPETQRTVGSLRSLDLVPMSEVQLTTETIRRF--------- 261

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            R   L   G      RL + ++              +E++          +   TLF+Y
Sbjct: 262 -RQGYLSSFGAATRDDRLYETVS-------EGRRYAGLEHWMPLFY-----DGLDTLFDY 308

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +  D  +  D           +      R A + +Y     + + N       +  L P 
Sbjct: 309 LG-DVPMLFDP---------QVEEAATERLALIQDYFQAREAALKNPQSGVAPYKPLPPR 358

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI---------------RSARTQVE 569
            + +  TP  W+ +   G +V      T   D    I                 A +  +
Sbjct: 359 ALYL--TPNEWKSKVESGTVVRLTPFATPDSDERAVIDCGARAGRSFAPERADDAASVFD 416

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                I      G  ++L   ++   + L   L +  ++      +   +     +  L+
Sbjct: 417 AAVAHIRDLQASGHHVILGSWSEGSRDRLCGVLTDHGLK------KPTVINTFAAVNALK 470

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD 658
            G  DV V +  L  G  +    +VA  D
Sbjct: 471 RGT-DVAVAVWGLESGFTLDRLAVVAEGD 498



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 73/191 (38%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  T  +D    +R+  T  + +   + +     +
Sbjct: 795 HVLTLSATPIPRTLQLAMTGVRELSIIATPPMDRLA-VRTFVTPFDPLLVREALLRERYR 853

Query: 582 GLRILLTVLTKRMAEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +            ++  +L        V   H ++   +  +++     GK+DVL+  
Sbjct: 854 GGQSFYVAPRIEDLAEVKRFLDTEMPETTVAVAHGQMAAGQLEDVMTAFYEGKYDVLLST 913

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G      +L Q  GR  R   SK   YA   T + + 
Sbjct: 914 TIVESGLDIPTANTLIVHRADMFGL----AALYQLRGRVGR---SKARAYALFTTPANRQ 966

Query: 700 AIDETTRRREK 710
              +  +R + 
Sbjct: 967 LTTQAEQRLKV 977


>gi|157826877|ref|YP_001495941.1| transcription-repair coupling factor [Rickettsia bellii OSU 85-389]
 gi|157802181|gb|ABV78904.1| Transcription-repair coupling factor [Rickettsia bellii OSU 85-389]
          Length = 1120

 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 66/371 (17%), Positives = 126/371 (33%), Gaps = 54/371 (14%)

Query: 179 SGKTF-TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           + K+F T+   I+  ++  +++  N+  A QLY +   F P   + YF            
Sbjct: 9   AAKSFFTIDSFIKNSKQDFVLVTSNEEEALQLYKQALFFLPSENIYYF------------ 56

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS--VSCIYGIGSVESYSQMIV 295
            P  DT     +S N  I   R      L       +V +   + +  +   + +++  +
Sbjct: 57  -PSYDTIPYDHTSPNCNILSKRAETLSKLTTNKGNKLVITHATNLLNKLPPKDFFAKYYL 115

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
           +L     +   EL   LV+  + R    +  G F V G+ +++     E   +R++   +
Sbjct: 116 KLFPKMKLSANELSKFLVENSFTRNASTVDVGEFAVRGEIVDLILP--ESKGYRINFSWD 173

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
            +E I +F   T    R+   + I   +  V    T++                L   G 
Sbjct: 174 YVESIKQFDIDTQISTRSCNELIISPANEIVLNPETISNFKDN----------YLRNFGV 223

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                 L + IT               E           G     L +Y+    ++F + 
Sbjct: 224 NHTDNPLYEAIT-------GGRKFSGYEQLLPLFYDSYSG-----LTDYLNNLVIIFDNL 271

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN-CLRPTTIVVSATPGS 534
           +   I +    Y   +  KA L           D   L+F  +   L P+ +  ++    
Sbjct: 272 TKQAILEFEHSYNDFY--KARL-----------DANKLKFNSFYPTLSPSQLYFTSLEAI 318

Query: 535 WELEQCQGIIV 545
             LEQ   I++
Sbjct: 319 ELLEQENNILI 329



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 12/192 (6%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQ 580
              + +SATP    L+     + E  I  T  ++   E+R++    + V   D +     
Sbjct: 729 THVLAMSATPIPRTLQMSMTDLKELSIIATPPLNRL-EVRTSVMPFDPVIIRDALLREHF 787

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G +    V      ED+ + L +    + Y   H ++   +  EI+ +   GKFD+L+ 
Sbjct: 788 RGGKSFFVVPRINDIEDIEKQLKQIVPELSYKVAHGKMSPNKIDEIMSEFYAGKFDILIS 847

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DI +   + I  AD  G  +    L Q  GR  R        YA     S +
Sbjct: 848 TTIIESGIDIQDANTMIIHKADMLGLSQ----LYQLRGRIGRGKMRG---YAYLTLPSHK 900

Query: 699 LAIDETTRRREK 710
                + RR E 
Sbjct: 901 KMTPHSLRRLEI 912



 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKT-------FTMAK 187
           ++   F  +  +  + DQ  AI  + + + +     +L+ G  G GKT       F +AK
Sbjct: 564 EEYDKFCAKFPFTETEDQLNAINDIREDLSNGMLMDRLICGDVGFGKTEVAMRASFMVAK 623

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
            +        V+ P  IL +Q ++ F   F  + +            EA + R++    K
Sbjct: 624 SLNENSPQVAVVVPTTILCSQHFARFTERFKDSDLNIKQLSSVVSSKEAKIVRSELESGK 683

Query: 248 ESSI 251
            + I
Sbjct: 684 INII 687


>gi|240140979|ref|YP_002965459.1| transcription repair coupling protein, ATP-dependent helicase
           [Methylobacterium extorquens AM1]
 gi|240010956|gb|ACS42182.1| transcription repair coupling protein, ATP-dependent helicase
           [Methylobacterium extorquens AM1]
          Length = 1196

 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 83/509 (16%), Positives = 156/509 (30%), Gaps = 80/509 (15%)

Query: 188 VIEAMQRPAIVMAPNKILA---AQLYSEFKNFFPHNAVEY-----------FVSYYDYYQ 233
            I+    P +   P+   A   A L       F   AV             F +   +  
Sbjct: 32  AIKRGDSPTLASVPDGFDALVAADLARALSGSFEGPAVLVHVARDSGRSNAFQNALKFVA 91

Query: 234 PEAY---VPRTDTYIEKESSINEQIDRMRHSATRSLL------ERNDCIVVSSVSCIYGI 284
           PE     VP  D       S N  I   R +A   L       E+   +  +  + +  +
Sbjct: 92  PEIEAMSVPAWDCQPYDRVSPNGAIAAQRMTALSRLTRSRSSEEKPRILCTTVNALVQRV 151

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
                 +       IG+ V   ++++ +    + R       G + V G  +++ P  L 
Sbjct: 152 PPRSRVAVETFSAAIGNVVPMDKVVAWVEANGFLRTGTVRDTGEYAVRGGILDLSPPGL- 210

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
               R+  FG+ +E I  F P T + + ++ ++ +   S       T+            
Sbjct: 211 PNPIRLDFFGDTLESIRAFDPETQRTVGSLRSLDLVPMSEVQLTTETIRRF--------- 261

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            R   L   G      RL + ++              +E++          +   TLF+Y
Sbjct: 262 -RQGYLSSFGAATRDDRLYETVS-------EGRRYAGLEHWMPLFY-----DGLDTLFDY 308

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +  D  +  D           +      R A + +Y     + + N       +  L P 
Sbjct: 309 LG-DVPMLFDP---------QVEEAATERLALIQDYFQAREAALKNPQSGVAPYKPLPPR 358

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI---------------RSARTQVE 569
            + +  TP  W+ +   G +V      T   D    I                 A +  +
Sbjct: 359 ALYL--TPNEWKSKVESGTVVRLTPFATPDSDERAVIDCGARAGRSFAPERADDAASVFD 416

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                I      G  ++L   ++   + L   L +  ++      +   +     +  L+
Sbjct: 417 AAVAHIRDLQASGHHVILGSWSEGSRDRLCGVLTDHGLK------KPTVINTFAAVNALK 470

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD 658
            G  DV V +  L  G  +    +VA  D
Sbjct: 471 RGT-DVAVAVWGLESGFTLDRLAVVAEGD 498



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 73/191 (38%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  T  +D    +R+  T  + +   + +     +
Sbjct: 795 HVLTLSATPIPRTLQLAMTGVRELSIIATPPMDRLA-VRTFVTPFDPLLVREALLRERYR 853

Query: 582 GLRILLTVLTKRMAEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +            ++  +L        V   H ++   +  +++     GK+DVL+  
Sbjct: 854 GGQSFYVAPRIEDLAEVKRFLDTEMPETTVAVAHGQMAAGQLEDVMTAFYEGKYDVLLST 913

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G      +L Q  GR  R   SK   YA   T + + 
Sbjct: 914 TIVESGLDIPTANTLIVHRADMFGL----AALYQLRGRVGR---SKARAYALFTTPANRQ 966

Query: 700 AIDETTRRREK 710
              +  +R + 
Sbjct: 967 LTTQAEQRLKV 977


>gi|169347359|ref|ZP_02866297.1| hypothetical protein CLOSPI_00074 [Clostridium spiroforme DSM 1552]
 gi|169293976|gb|EDS76109.1| hypothetical protein CLOSPI_00074 [Clostridium spiroforme DSM 1552]
          Length = 1141

 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 129/362 (35%), Gaps = 33/362 (9%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A   LL G    +   ++  V+   +   +      ++R  +V+  N+  A  LY +
Sbjct: 10  QNLAFNALLNG----KGNIVVNDVSD--EALLLTSAFLKLKRNIVVVKANQYEANMLYQK 63

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                    V  F                ++Y  +  + + ++   R      L +    
Sbjct: 64  VM-LLNEKDVSLFAVD-------------ESYRIEALAASPELLGQRIDTMYQLTKNEPR 109

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           I+++    I   + + + +    +++K+G  ++  +L +SL+K  Y+          F  
Sbjct: 110 ILITHSQAIIRYLPTKQLFIDNCLKIKVGMQIDIYDLKASLLKSGYQSIIRVDQPFYFSK 169

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  I++F    E+   R+  F ++IE I  +   T + I N+  I I   S  +     
Sbjct: 170 RGGVIDVFSIQYEN-PIRIEFFDDEIESIRFYNQNTQRTIENINEITILPASDILYDDQE 228

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
           +   +  I +    +   L++    L  +    +++ D E L    +  S+ +Y      
Sbjct: 229 VTKVISKINDLRDSQAEILDE----LYLEDFLNKVSIDQENLRNHDTSFSMYSYYNLFN- 283

Query: 452 RNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
                   ++ +Y+ +D L+ +  S             +F+    L   G  +      R
Sbjct: 284 -----QTTSISDYL-DDPLIILSNSQDINFAFKNYLEENFYYYQELINVGKSVKGLNLFR 337

Query: 512 PL 513
            L
Sbjct: 338 DL 339



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 72/200 (36%), Gaps = 20/200 (10%)

Query: 525 TIVVSATPGSWELEQC--QGIIVEQIIRPTG----LVDPPVEIRSARTQVEDVYDEINLA 578
            + +SATP    L+        + QI  P      +    +E          +   I   
Sbjct: 753 VLTLSATPIPRTLQMSLMGIRGLSQIETPPKNRQPVQTYVIEKNDVL-----IKQIIERE 807

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +  ++           +  + +       +V   H ++   E  +++      +++VL
Sbjct: 808 LARDGQVFYLHNRTSNIANTADKIGRMVPGAKVVVGHGKMDKNEIEDVMMRFVNKEYNVL 867

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +   ++  G+DIP    + + +ADK G  +    L Q  GR  R+       YA  +   
Sbjct: 868 ICTTIIETGIDIPNANTIIVENADKFGLSQ----LYQIKGRVGRSNRG---AYAYLLYNP 920

Query: 697 IQLAIDETTRRREKQLEHNK 716
            ++  +E ++R +   E  +
Sbjct: 921 SKVLTEEASKRLKAIKEFTE 940


>gi|227546191|ref|ZP_03976240.1| transcription-repair coupling factor helicase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|227213172|gb|EEI81044.1| transcription-repair coupling factor helicase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
          Length = 1194

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 96/257 (37%), Gaps = 24/257 (9%)

Query: 153 QPAAIAQLLKG---IHSREKVQLLLGVTGSGKTFTMAKVIE----AMQRPAIVMAPNKIL 205
           Q     +L  G           +L G+    +    A + +       +P +++  +   
Sbjct: 24  QDKTFLKLAAGDIEASDDVDNSVLAGIPEGLRPALAAAIGQGVAGKPGKPVVLVVASGRE 83

Query: 206 AAQLYSEFKNFFPHNAVEYFV-SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH-SAT 263
           A +     ++++  +  +      ++    E   PR DT   + +       R++H S T
Sbjct: 84  AEETVGSLRSWYDGDPNDIAQLEAWETLPHERLSPRADTVASRMAVF----RRLKHPSDT 139

Query: 264 RSLLERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
            S+      +V+   S I     G+G VE          +G+ +   E    L++  Y R
Sbjct: 140 DSMFGPIRILVMPIRSLIQPVVQGLGDVEPLV-----FTVGEDLPLDEAAKRLIENAYAR 194

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIK 378
            D+ + RG F V G  +++FP        R+  FG++I+ I EF+    +   + ++TI 
Sbjct: 195 VDLVMDRGEFAVRGGILDVFPP-TAPHPVRIEFFGDEIDTIKEFHASDQRTYGDGLKTIW 253

Query: 379 IYANSHYVTPRPTLNTA 395
             A             A
Sbjct: 254 ATACRELQLTDAVRTRA 270



 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 789 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAVRRELLRG 847

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +    + + ++           H ++   +  +IIRD      DVLV   
Sbjct: 848 GQVFYVHNRVQDISSIADKIHTLVPEAHVGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTT 907

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    +K +  
Sbjct: 908 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPSKPMTE 962


>gi|323517915|gb|ADX92296.1| transcription-repair coupling factor [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 1153

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/465 (13%), Positives = 147/465 (31%), Gaps = 65/465 (13%)

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
           ++        +++A N    AQL SE + +     +                P  +    
Sbjct: 36  EIATQHSSLLVLVARNNQHVAQLESELEFYGVKPTI---------------FPDREILPY 80

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
              S ++ I   R +   ++ +    +++S+ +    +            +K+G   + +
Sbjct: 81  DRLSPHQDIVSERLAILSNMPQ-QGVLLISASTLAQRVAPYSWVLGEHFDIKVGQKFDLE 139

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +    LV+  Y   D     G F V G  ++IF +  ++   R+ +F ++I+ +  F P 
Sbjct: 140 QQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIF-ASGQESPIRIDLFDDEIDSLKFFDPE 198

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           T +    +++  +     +                  + R  E        +        
Sbjct: 199 TQRTTTTLKSFTVLPAKEFPLKEGRSV---------FRDRYSEFFPTANPKK-------- 241

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT-----IP 481
               + +    +   IE Y      +   +       Y+P++ ++       T       
Sbjct: 242 NPIYQDVLDGIASPGIEFYLPLFFNKEQMQSQSMFTTYLPKNCIVITTNDIDTDLTSFWK 301

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           ++   Y    H           L    ++      ++  +     +VSA      +E+  
Sbjct: 302 EVMRRYEDRRHNMDQPILAPEELFISPNHLLSALNQFPRM-----LVSA----ETIEEKA 352

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G +  +  +P  L   P + +     V+   DE N        +LL   +    E L + 
Sbjct: 353 GALNLKTEQPPKLPVDPKKEKPFSA-VKKYIDEANHP------VLLVAESAGRRESLKDA 405

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L           S +  +  +E     ++ +F + +    L  GL
Sbjct: 406 LR----------SSLGEIPNVENFEQFQISQFAIAITNAPLDRGL 440



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 95/259 (36%), Gaps = 52/259 (20%)

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
             +  L+ VDE H    +     +        L      +P     R L    ++ +R  
Sbjct: 725 FKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIP-----RTLNMA-FSGMRDL 778

Query: 525 TIVVSATP-------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN- 576
           +I+  ATP        ++  E     I E I+R                QV  +++E+  
Sbjct: 779 SII--ATPPARRLAVKTFVQEHTDASIKEAILRELLR----------GGQVYFLHNEVET 826

Query: 577 -LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A + +R+L+                E  + V   H +++  E  ++++     +++V
Sbjct: 827 IERAAENIRVLV---------------PEARVAVA--HGQMRERELEQVMQQFYHKEYNV 869

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +  
Sbjct: 870 LVCSTIIETGIDVPNANTILIERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVP 922

Query: 696 SIQLAIDETTRRR-EKQLE 713
           SI+    +  +R    Q  
Sbjct: 923 SIKHLKGDAEKRLDAIQRA 941



 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 88/232 (37%), Gaps = 32/232 (13%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q G ++ + V T    ++  E   +   +  +R+  +         
Sbjct: 638 GKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTH 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++ I DL  GK D++VG + LL+E +   + GL+ + +  + G    +        +A R
Sbjct: 698 LKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMVVDEEHRFGVRDKERI------KALR 751

Query: 681 NVNSKVILYADTITKSIQLA---------IDETTRRREKQLEHNKKHNINPQSVKEKIME 731
                + L A  I +++ +A         I     RR       ++H     S+KE I+ 
Sbjct: 752 ADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEH--TDASIKEAILR 809

Query: 732 VI----------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
            +          + +   + A  NI +   +  ++   G+   + L + M  
Sbjct: 810 ELLRGGQVYFLHNEVETIERAAENIRVLVPEARVAVAHGQMRERELEQVMQQ 861


>gi|188995578|ref|YP_001929830.1| transcription-repair coupling factor [Porphyromonas gingivalis ATCC
           33277]
 gi|188595258|dbj|BAG34233.1| transcription-repair coupling factor [Porphyromonas gingivalis ATCC
           33277]
          Length = 1122

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 95/228 (41%), Gaps = 18/228 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +  L+K +  REK   L G+ GS     + K++    RP + +A +   A  L+S+ +  
Sbjct: 20  VQALMKAL-DREKYVALDGLCGSSAALIV-KLLHESGRPVLCIASDMEEAGYLFSDLEQL 77

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL-LERNDCIVV 275
               +  +F S Y                 K    +     +R  A  +L +E +  +VV
Sbjct: 78  GGEGSALFFPSSYKRAI-------------KYGHTDAAQQVLRAEALAALSMEGSCPLVV 124

Query: 276 SSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           S    +   + + +   + +  ++ GD +++  L   L++  ++R D     G F V G 
Sbjct: 125 SYPEAVAERVVAGDILEKEMHSIRQGDRLDRDFLRDLLLEWGFERTDYVYEPGQFAVRGS 184

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
            +++F S   ++  R+  F ++IE I  F   +   +  +  + +  +
Sbjct: 185 LLDVF-SFSRELPVRIDFFDDEIESIRLFEVESQLSVGTLSEVVLMPD 231



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 11/193 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G      I        PV    AR   + V + +N    +  
Sbjct: 706 TLTMSATPIPRTLQFSLMGARDLSNINTPPPNRYPVATELARFSPDIVREAVNFEMSRNG 765

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++ +        E++   +     + RV   H  +   E   +I D    ++DVLV   +
Sbjct: 766 QVFIVHNRIDNIEEIAGIVQREVPDARVAVGHGRMSPTELERLILDFVHYEYDVLVATTI 825

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I DA + G       L Q  GR  R+ N K   Y  +   S+   +
Sbjct: 826 IENGIDVPNANTIIIDDAHRYGLSE----LHQLRGRVGRS-NRKAFCYLLSPPLSV---L 877

Query: 702 DETTRRREKQLEH 714
            + +RRR + +E+
Sbjct: 878 SDDSRRRLQAIEN 890


>gi|148245051|ref|YP_001219745.1| transcription-repair coupling factor [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326878|dbj|BAF62021.1| transcription-repair coupling factor [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 1145

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/437 (15%), Positives = 140/437 (32%), Gaps = 52/437 (11%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     + +     Q   +V+A + +     Y   K +     +  F ++       
Sbjct: 24  LYGSADALALIE-FANQQHIILVIANDIVHFDNFYKSLKFYNTDLEILKFDNW------- 75

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
                 +       S +  I   R      L      IV++++  ++  +  +E   +  
Sbjct: 76  ------EVLAYDYFSPHPDITSSRLKTLSKLKSLKRGIVITTLESLFSHLCPLEFSKKYS 129

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + ++I D +        L+K  YK     +  G F +    I+++P      A+R+++F 
Sbjct: 130 LNIRINDKINPDTFSEKLLKIGYKHVITVMEHGEFNMRNSLIDLYPMGT-KTAYRINLFN 188

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
             +E I  F   T +    +  I +     +     T NT+++Y K   K         G
Sbjct: 189 QKVESIRAFNTSTQRSKTKIPEITLLPAREFA----TDNTSIEYFKTNYK---KIFNDNG 241

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                        +    +        IE Y              TLF+Y+ +++++   
Sbjct: 242 -------------FIYTEVSEGRLPGGIEFYLPLFFH-----TTNTLFDYLADNTIIATS 283

Query: 475 -ESHVTIPQISGMYRGDFHR-KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
            E    + +     R  F   K +L      +     ++ L F E        I  S   
Sbjct: 284 KEFSNLVDKTYNEIRERFENAKKSLDRAPLDIQRVFLSKELLFSEVKKKSQIIISTSK-- 341

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
              E ++        +  P       +E+++     +          +Q  +IL+   + 
Sbjct: 342 --LENKKQHFNFNSSLPPP-----VRIELQTNNPLSKFSTFVKRFTNKQNKKILIVCESL 394

Query: 593 RMAEDLTEYLYERNIRV 609
                L++ L   N+  
Sbjct: 395 DRQNVLSDLLINHNLNT 411



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 9/190 (4%)

Query: 516 EEWNCLRPT--TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVY 572
           E    LR     + ++ATP    L    G + E  II         ++        +++ 
Sbjct: 742 EALKKLRGQSDILTMTATPIPRTLNMALGSLRELSIIATPPAKRSTIQTFVQEWHNDNIK 801

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRL 630
           + I     +G ++ +        +++ E L +    +++R  H ++ T E  +I+ D   
Sbjct: 802 EAITREIHRGGQVFILHNDINSIDNMAENLKQIIPKLQIRIAHGKIPTRELEQIMSDFYH 861

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            +F +LV   ++  G+DIP    + I +A   G  +    L Q  GR  R+ +       
Sbjct: 862 ARFHILVCTTIIETGIDIPNANTIIINNAQNFGLAQ----LHQLRGRVGRSHHRAYAYLI 917

Query: 691 DTITKSIQLA 700
                S+   
Sbjct: 918 VKSHLSLSKT 927


>gi|170023947|ref|YP_001720452.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
           YPIII]
 gi|169750481|gb|ACA67999.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
           YPIII]
          Length = 1148

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 116/298 (38%), Gaps = 37/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE    P +++ P+   A +L  E + F P              QP 
Sbjct: 22  LTGSACAVECAEIIERHDGPVMLITPDMQTALRLRDEIQQFSP--------------QPV 67

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
           + +   +T      S ++ I   R S    L      +++  ++ +   +   E      
Sbjct: 68  STLSDWETLPYDSFSPHQDIISARLSCLYHLPAMKRGVIILPINTLMQRVCPHEFLHGHA 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K G  + + +L + L +  Y+  +  +  G F   G  ++++P    +  +R+  F 
Sbjct: 128 LVMKKGQHLSRDKLRAQLEQAGYRSVEQVMEHGEFATRGALLDLYPMGSNE-PYRIDFFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           +DI+ +  F   + + +  VE I +     +   +     A++  + + + +        
Sbjct: 187 DDIDSLRVFDVDSQRTLVEVEQINLLPAHEFPIDK----AAIELFRSQWREQ-------- 234

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
              E +R  + I    + +        IE +      +      PTLF Y+PE++LL 
Sbjct: 235 --FEVRRDNEHI---YQQVSKGIWPAGIEYWQPLFFSQQL----PTLFSYLPENTLLV 283



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  + + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--IREAILREILR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E +T+ L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKVTQKLAELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPSANTIIIERADHLGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 922


>gi|86749967|ref|YP_486463.1| transcription-repair coupling factor [Rhodopseudomonas palustris
           HaA2]
 gi|86572995|gb|ABD07552.1| transcription-repair coupling factor [Rhodopseudomonas palustris
           HaA2]
          Length = 1171

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 112/362 (30%), Gaps = 51/362 (14%)

Query: 185 MAKVIEAMQRP----AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           +A+ I A  +P      V+  +     QL    + F P   V  F             P 
Sbjct: 35  LARAIAARPKPPAVSLAVICRDGPRMQQLERSLEFFAPDVGVMQF-------------PA 81

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLL-----ERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            D       S +  I   R +    L      ++   ++ +  + +  + + E  +   +
Sbjct: 82  WDCQPYDRVSPHAGILAQRVTTLARLSRLAGSDKPLIVLTTVNAAVQRVPAREVIAAQAL 141

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +  G+ V    + + L    Y R       G + V G  +++FP+ LE    R   FG+
Sbjct: 142 SVAPGNIVPMDSIAAWLEHNGYSRASTVREPGEYAVRGGILDLFPAGLE-QPVRFDFFGD 200

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
            +E I  F   T + +  +  + +   S +     T+             R+  +   G 
Sbjct: 201 QLESIRTFDAETQRTLHTMRGLDLVPVSEFQLVTETIRRF----------RMGYVAAFGA 250

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV-- 473
                +L   I+              +E++      R        LF+Y+P  + + +  
Sbjct: 251 PDRDDQLYTSIS-------EGRRHPGMEHWLPLFQERMDA-----LFDYLP-GTPVAIEP 297

Query: 474 ---DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
              D +     QI+  Y                 P   D   L   EW        +   
Sbjct: 298 QSEDAARERFKQIADYYDARREAMEHPGSGAIYKPLPPDQLYLTEAEWTARLQGISLARL 357

Query: 531 TP 532
           TP
Sbjct: 358 TP 359



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 95/261 (36%), Gaps = 38/261 (14%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + +  I  +  VD    +R+     + +   + +     +
Sbjct: 772  HVLTLSATPIPRTLQLAMTGVRDLSIIASPPVDRLA-VRTFVAPHDPLMIREALLRERYR 830

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       ++ ++L +    ++V   H ++      +I+      K+D+L+  
Sbjct: 831  GGQAFYVVPRIDDLAEVKDFLDKHVPEMKVAVAHGQMPPTVIEDIMSAFYDAKYDILLST 890

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+          
Sbjct: 891  TIVESGLDIPNANTLIVHRADMFGLAQ----LYQLRGRVGRSKLRAYALFTLP------- 939

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                             +HNI  Q+ +  K+++ ++ +       ++        +L  +
Sbjct: 940  -----------------QHNITAQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLLGE 982

Query: 759  KGKAHLK----SLRKQMHLAA 775
            +   H+K     L +QM   A
Sbjct: 983  EQSGHIKEVGFELYQQMLEEA 1003


>gi|51596765|ref|YP_070956.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
           IP 32953]
 gi|186895833|ref|YP_001872945.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
           PB1/+]
 gi|51590047|emb|CAH21681.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
           IP 32953]
 gi|186698859|gb|ACC89488.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
           PB1/+]
          Length = 1148

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 116/298 (38%), Gaps = 37/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE    P +++ P+   A +L  E + F P              QP 
Sbjct: 22  LTGSACAVECAEIIERHDGPVMLITPDMQTALRLRDEIQQFSP--------------QPV 67

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
           + +   +T      S ++ I   R S    L      +++  ++ +   +   E      
Sbjct: 68  STLSDWETLPYDSFSPHQDIISARLSCLYHLPAMKRGVIILPINTLMQRVCPHEFLHGHA 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K G  + + +L + L +  Y+  +  +  G F   G  ++++P    +  +R+  F 
Sbjct: 128 LVMKKGQHLSRDKLRAQLEQAGYRSVEQVMEHGEFATRGALLDLYPMGSNE-PYRIDFFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           +DI+ +  F   + + +  VE I +     +   +     A++  + + + +        
Sbjct: 187 DDIDSLRVFDVDSQRTLVEVEQINLLPAHEFPIDK----AAIELFRSQWREQ-------- 234

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
              E +R  + I    + +        IE +      +      PTLF Y+PE++LL 
Sbjct: 235 --FEVRRDNEHI---YQQVSKGIWPAGIEYWQPLFFSQQL----PTLFSYLPENTLLV 283



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  + + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--IREAILREILR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E +T+ L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKVTQKLAELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPSANTIIIERADHLGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 922


>gi|22125678|ref|NP_669101.1| transcription-repair coupling factor [Yersinia pestis KIM 10]
 gi|45441565|ref|NP_993104.1| transcription-repair coupling factor [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108807895|ref|YP_651811.1| transcription-repair coupling factor [Yersinia pestis Antiqua]
 gi|108812169|ref|YP_647936.1| transcription-repair coupling factor [Yersinia pestis Nepal516]
 gi|145599106|ref|YP_001163182.1| transcription-repair coupling factor [Yersinia pestis Pestoides F]
 gi|149366410|ref|ZP_01888444.1| transcription-repair coupling factor [Yersinia pestis CA88-4125]
 gi|162421681|ref|YP_001607245.1| transcription-repair coupling factor [Yersinia pestis Angola]
 gi|165925529|ref|ZP_02221361.1| transcription-repair coupling factor [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938427|ref|ZP_02226984.1| transcription-repair coupling factor [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008143|ref|ZP_02229041.1| transcription-repair coupling factor [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166210634|ref|ZP_02236669.1| transcription-repair coupling factor [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401750|ref|ZP_02307241.1| transcription-repair coupling factor [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421853|ref|ZP_02313606.1| transcription-repair coupling factor [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426319|ref|ZP_02318072.1| transcription-repair coupling factor [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|218928761|ref|YP_002346636.1| transcription-repair coupling factor [Yersinia pestis CO92]
 gi|229841610|ref|ZP_04461768.1| transcription-repair coupling factor [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843727|ref|ZP_04463870.1| transcription-repair coupling factor [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229894469|ref|ZP_04509651.1| transcription-repair coupling factor [Yersinia pestis Pestoides A]
 gi|229902491|ref|ZP_04517610.1| transcription-repair coupling factor [Yersinia pestis Nepal516]
 gi|294504177|ref|YP_003568239.1| transcription-repair coupling factor [Yersinia pestis Z176003]
 gi|21958592|gb|AAM85352.1|AE013781_3 transcription-repair coupling factor [Yersinia pestis KIM 10]
 gi|45436426|gb|AAS61981.1| transcription-repair coupling factor [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108775817|gb|ABG18336.1| transcription-repair coupling factor [Yersinia pestis Nepal516]
 gi|108779808|gb|ABG13866.1| transcription-repair coupling factor [Yersinia pestis Antiqua]
 gi|115347372|emb|CAL20270.1| transcription-repair coupling factor [Yersinia pestis CO92]
 gi|145210802|gb|ABP40209.1| transcription-repair coupling factor [Yersinia pestis Pestoides F]
 gi|149290784|gb|EDM40859.1| transcription-repair coupling factor [Yersinia pestis CA88-4125]
 gi|162354496|gb|ABX88444.1| transcription-repair coupling factor [Yersinia pestis Angola]
 gi|165913542|gb|EDR32162.1| transcription-repair coupling factor [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922638|gb|EDR39789.1| transcription-repair coupling factor [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992525|gb|EDR44826.1| transcription-repair coupling factor [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207814|gb|EDR52294.1| transcription-repair coupling factor [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960338|gb|EDR56359.1| transcription-repair coupling factor [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048855|gb|EDR60263.1| transcription-repair coupling factor [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054674|gb|EDR64478.1| transcription-repair coupling factor [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229680537|gb|EEO76634.1| transcription-repair coupling factor [Yersinia pestis Nepal516]
 gi|229689335|gb|EEO81398.1| transcription-repair coupling factor [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694073|gb|EEO84121.1| transcription-repair coupling factor [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229703488|gb|EEO90505.1| transcription-repair coupling factor [Yersinia pestis Pestoides A]
 gi|262362294|gb|ACY59015.1| transcription-repair coupling factor [Yersinia pestis D106004]
 gi|294354636|gb|ADE64977.1| transcription-repair coupling factor [Yersinia pestis Z176003]
 gi|320014765|gb|ADV98336.1| transcription-repair coupling factor [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 1148

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 116/298 (38%), Gaps = 37/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE    P +++ P+   A +L  E + F P              QP 
Sbjct: 22  LTGSACAVECAEIIERHDGPVMLITPDMQTALRLRDEIQQFSP--------------QPV 67

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
           + +   +T      S ++ I   R S    L      +++  ++ +   +   E      
Sbjct: 68  STLSDWETLPYDSFSPHQDIISARLSCLYHLPAMKRGVIILPINTLMQRVCPHEFLHGHA 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K G  + + +L + L +  Y+  +  +  G F   G  ++++P    +  +R+  F 
Sbjct: 128 LVMKKGQHLSRDKLRAQLEQAGYRSVEQVMEHGEFATRGALLDLYPMGSNE-PYRIDFFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           +DI+ +  F   + + +  VE I +     +   +     A++  + + + +        
Sbjct: 187 DDIDSLRVFDVDSQRTLVEVEQINLLPAHEFPIDK----AAIELFRSQWREQ-------- 234

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
              E +R  + I    + +        IE +      +      PTLF Y+PE++LL 
Sbjct: 235 --FEVRRDNEHI---YQQVSKGIWPAGIEYWQPLFFSQQL----PTLFSYLPENTLLV 283



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  + + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--IREAILREILR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E +T+ L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKVTQKLAELVPEARITIGHGQMRERDLERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPSANTIIIERADHLGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 922


>gi|56696942|ref|YP_167304.1| transcription-repair coupling factor [Ruegeria pomeroyi DSS-3]
 gi|56678679|gb|AAV95345.1| transcription-repair coupling factor [Ruegeria pomeroyi DSS-3]
          Length = 1142

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 100/308 (32%), Gaps = 39/308 (12%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G         +   +     P + +A +      + +    F P   V  F         
Sbjct: 3   GAPEGFDARLILNEVARAGAPVLHVARDDKRLEAMRAALAFFAPDLPVFVF--------- 53

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSL---LERNDCIVVSSVSCIYGIGSVESYS 291
               P  D       S N  +   R +   +L   +     ++ +  +    + + +   
Sbjct: 54  ----PSWDCLPYDRVSPNADVSAARMATLAALVHQMPDRFVLLTTLNAATQRVPARDLLR 109

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           +     ++G  V+++ L   LV+  + +    +  G + + G  I+I+P   +    R+ 
Sbjct: 110 EAAFSAQVGRRVDEQALRQFLVRMGFSQSPTVMEPGDYAIRGGIIDIYPP-GDSGPVRLD 168

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
            FG+ ++    F P T +    ++ I++   S  +     +    +  + E         
Sbjct: 169 FFGDVLDGARRFDPATQRTTEKLDLIELAPVSEVILDEAAITRFRQNYRIE-------FG 221

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             G                E +      Q +E++  +       E   TLF+Y+P  ++ 
Sbjct: 222 AAGSD----------DPLYEAVSAGRKHQGVEHWLPFFH-----ERLETLFDYLPAATVT 266

Query: 472 FVDESHVT 479
             D+   T
Sbjct: 267 LDDQVTPT 274



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 73/187 (39%), Gaps = 9/187 (4%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  +D    IR+  ++ +   V + +     +
Sbjct: 738 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPIDRLA-IRTYVSEFDAVTVREALLREHYR 796

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       D+  +L E+   + Y+  H ++   E  + +     GK+DVL+  
Sbjct: 797 GGQSFYVVPRITDLPDIEAFLKEQLPELTYVVAHGQMAAGELDDRMNAFYDGKYDVLLAT 856

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+               +  
Sbjct: 857 TIVESGLDIPTANTMVVHRADMFGLAQ----LYQIRGRVGRSKARAYAYLTTKPRARLTP 912

Query: 700 AIDETTR 706
           A ++  R
Sbjct: 913 AAEKRLR 919


>gi|301310728|ref|ZP_07216667.1| transcription-repair coupling factor [Bacteroides sp. 20_3]
 gi|300832302|gb|EFK62933.1| transcription-repair coupling factor [Bacteroides sp. 20_3]
          Length = 1120

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 90/232 (38%), Gaps = 18/232 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A+  LLK  +   +   L G+ GSG   T+A +    +   + +  ++  A   Y +
Sbjct: 15  QVTALDTLLK--NDTSRNIFLKGLNGSGPAMTIASLFTKGRGSYVCVLNDQEEAGYFYHD 72

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                  N V +F S Y                 K   ++   + +R      L + +  
Sbjct: 73  LMQLTASNEVYFFPSAYRRAI-------------KYGHVDPANEILRTEVLSRLQDPDAS 119

Query: 273 IVV--SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            V+     +    + + E   +  +++ +G+ ++   +   L +  +++ D     G + 
Sbjct: 120 FVIVTYPDALAERVVAREVLKENTLKISVGEKLDNMFVSDVLDEYGFEQVDYVYEPGQYA 179

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           + G  +++F S   +  +R+  FG+++E I  F   T      +++I I   
Sbjct: 180 LRGSILDVF-SFSNEFPYRIDFFGDEVETIRTFDVETQLSKEKLDSIYIVPE 230



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 76/201 (37%), Gaps = 17/201 (8%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+   R   + + + IN    +
Sbjct: 706 TLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEV--ERFNPDIIREAINFEMSR 763

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIR---VRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++       +   ++ E L  R +    V   H +++  +  +II D    ++DVL+ 
Sbjct: 764 NGQVFFINNRIQNIYEM-EALVRREVPDARVAVGHGQMEPEKLEKIILDFVNYEYDVLIA 822

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +++  G+D+P    + I +A + G     + L Q  GR  R+              S+ 
Sbjct: 823 TSIVESGIDVPNANTIIINNAQQFGL----SDLHQLRGRVGRSNRKAFCYLLSPPLTSLT 878

Query: 699 LAIDETTRRREKQLEHNKKHN 719
                  RRR + +E+  +  
Sbjct: 879 QE----ARRRLQAIENFSELG 895


>gi|284007308|emb|CBA72650.1| transcription-repair coupling factor [Arsenophonus nasoniae]
          Length = 1146

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 118/322 (36%), Gaps = 40/322 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+      A ++E      +++A +   A +L  E +  F  ++V     +       
Sbjct: 22  LIGAAAAVECADIVERHPGLVVLIAQDTHNALKLCDEIQQ-FSSHSVTMLSDW------- 73

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
                 +T      S +++I  +R +    L       ++V   + +  +  ++  +   
Sbjct: 74  ------ETLPYDNFSPHQEIISVRLANLYRLPTLTKGLLIVPVNTLMQKVCPIDFLTSNA 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + ++ GD + +++L ++L K  Y+  +  +  G +   G  +++FP    D  +R+  FG
Sbjct: 128 LVMQKGDKLSREKLRNNLDKAGYRHVEQVLEHGEYATRGALLDLFPM-GSDYPYRIDFFG 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           ++I+ +  F       I  VE I +     +    PT + A++  + + +          
Sbjct: 187 DEIDSLRTFDVDNQLTISEVEQINLLPAHEF----PTDDKAIELFRSQWREHFDIRRDP- 241

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                        +  + +        IE +          +P   LF+Y P ++LL   
Sbjct: 242 ------------EHIYQQISKKILPAGIEYWQPLF----FNQPLSALFDYFPANTLLITQ 285

Query: 475 ESHVTIPQISGMYRGDFHRKAT 496
           +       +   +   + R  +
Sbjct: 286 D---LTAAVDRFWADTYQRYES 304



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 72/186 (38%), Gaps = 11/186 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  I  T      + +++   Q +D+   + I     +G
Sbjct: 750 ILTLTATPIPRTLNMAMSGMRDLSIIAT-PPSRRLSVKTFVRQYDDLIVREAILREILRG 808

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +  E   E L       R++  H +++  E   ++ D    +F+VL+   
Sbjct: 809 GQVYYLFNDVKYIEKAKERLESLVPEARFVIGHGQMRERELERVMTDFHRQRFNVLICTT 868

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++   
Sbjct: 869 IIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSYHQAYAYLLTPHPKAM--T 922

Query: 701 IDETTR 706
           ID   R
Sbjct: 923 IDAQKR 928


>gi|153948693|ref|YP_001400575.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
           IP 31758]
 gi|152960188|gb|ABS47649.1| transcription-repair coupling factor [Yersinia pseudotuberculosis
           IP 31758]
          Length = 1148

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 116/298 (38%), Gaps = 37/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE    P +++ P+   A +L  E + F P              QP 
Sbjct: 22  LTGSACAVECAEIIERHDGPVMLITPDMQTALRLRDEIQQFSP--------------QPV 67

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
           + +   +T      S ++ I   R S    L      +++  ++ +   +   E      
Sbjct: 68  STLSDWETLPYDSFSPHQDIISARLSCLYHLPAMKRGVIILPINTLMQRVCPHEFLHGHA 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K G  + + +L + L +  Y+  +  +  G F   G  ++++P    +  +R+  F 
Sbjct: 128 LVMKKGQHLSRDKLRAQLEQAGYRSVEQVMEHGEFATRGALLDLYPMGSNE-PYRIDFFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           +DI+ +  F   + + +  VE I +     +   +     A++  + + + +        
Sbjct: 187 DDIDSLRVFDVDSQRTLVEVEQINLLPAHEFPIDK----AAIELFRSQWREQ-------- 234

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
              E +R  + I    + +        IE +      +      PTLF Y+PE++LL 
Sbjct: 235 --FEVRRDNEHI---YQQVSKGIWPAGIEYWQPLFFSQQL----PTLFSYLPENTLLV 283



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  + + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--IREAILREILR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E +T+ L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKVTQKLAELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPSANTIIIERADHLGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 922


>gi|256839562|ref|ZP_05545071.1| transcription-repair coupling factor [Parabacteroides sp. D13]
 gi|256738492|gb|EEU51817.1| transcription-repair coupling factor [Parabacteroides sp. D13]
          Length = 1145

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 90/232 (38%), Gaps = 18/232 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A+  LLK  +   +   L G+ GSG   T+A +    +   + +  ++  A   Y +
Sbjct: 40  QVTALDTLLK--NDTSRNIFLKGLNGSGPAMTIASLFTKGRGSYVCVLNDQEEAGYFYHD 97

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                  N V +F S Y                 K   ++   + +R      L + +  
Sbjct: 98  LMQLTASNEVYFFPSAYRRAI-------------KYGHVDPANEILRTEVLSRLQDPDAS 144

Query: 273 IVV--SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            V+     +    + + E   +  +++ +G+ ++   +   L +  +++ D     G + 
Sbjct: 145 FVIVTYPDALAERVVAREVLKENTLKISVGEKLDNMFVSDVLDEYGFEQVDYVYEPGQYA 204

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           + G  +++F S   +  +R+  FG+++E I  F   T      +++I I   
Sbjct: 205 LRGSILDVF-SFSNEFPYRIDFFGDEVETIRTFDVETQLSKEKLDSIYIVPE 255



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 76/201 (37%), Gaps = 17/201 (8%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+   R   + + + IN    +
Sbjct: 731 TLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEV--ERFNPDIIREAINFEMSR 788

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIR---VRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++       +   ++ E L  R +    V   H +++  +  +II D    ++DVL+ 
Sbjct: 789 NGQVFFINNRIQNIYEM-EALVRREVPDARVAVGHGQMEPEKLEKIILDFVNYEYDVLIA 847

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +++  G+D+P    + I +A + G     + L Q  GR  R+              S+ 
Sbjct: 848 TSIVESGIDVPNANTIIINNAQQFGL----SDLHQLRGRVGRSNRKAFCYLLSPPLTSLT 903

Query: 699 LAIDETTRRREKQLEHNKKHN 719
                  RRR + +E+  +  
Sbjct: 904 QE----ARRRLQAIENFSELG 920


>gi|298375260|ref|ZP_06985217.1| transcription-repair coupling factor [Bacteroides sp. 3_1_19]
 gi|298267760|gb|EFI09416.1| transcription-repair coupling factor [Bacteroides sp. 3_1_19]
          Length = 1120

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 90/232 (38%), Gaps = 18/232 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A+  LLK  +   +   L G+ GSG   T+A +    +   + +  ++  A   Y +
Sbjct: 15  QVTALDTLLK--NDTSRNIFLKGLNGSGPAMTIASLFTKGRGSYVCVLNDQEEAGYFYHD 72

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                  N V +F S Y                 K   ++   + +R      L + +  
Sbjct: 73  LMQLTASNEVYFFPSAYRRAI-------------KYGHVDPANEILRTEVLSRLQDPDAS 119

Query: 273 IVV--SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            V+     +    + + E   +  +++ +G+ ++   +   L +  +++ D     G + 
Sbjct: 120 FVIVTYPDALAERVVAREVLKENTLKISVGEKLDNMFVSDVLDEYGFEQVDYVYEPGQYA 179

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           + G  +++F S   +  +R+  FG+++E I  F   T      +++I I   
Sbjct: 180 LRGSILDVF-SFSNEFPYRIDFFGDEVETIRTFDVETQLSKEKLDSIYIVPE 230



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 76/201 (37%), Gaps = 17/201 (8%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+   R   + + + IN    +
Sbjct: 706 TLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEV--ERFNPDIIREAINFEMSR 763

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIR---VRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++       +   ++ E L  R +    V   H +++  +  +II D    ++DVL+ 
Sbjct: 764 NGQVFFINNRIQNIYEM-EALVRREVPDARVAVGHGQMEPEKLEKIILDFVNYEYDVLIA 822

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +++  G+D+P    + I +A + G     + L Q  GR  R+              S+ 
Sbjct: 823 TSIVESGIDVPNANTIIINNAQQFGL----SDLHQLRGRVGRSNRKAFCYLLSPPLTSLT 878

Query: 699 LAIDETTRRREKQLEHNKKHN 719
                  RRR + +E+  +  
Sbjct: 879 QE----ARRRLQAIENFSELG 895


>gi|114777171|ref|ZP_01452182.1| transcription-repair coupling factor [Mariprofundus ferrooxydans
           PV-1]
 gi|114552316|gb|EAU54799.1| transcription-repair coupling factor [Mariprofundus ferrooxydans
           PV-1]
          Length = 1109

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 97/309 (31%), Gaps = 39/309 (12%)

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           +    R  + + P+     QL  E   F        +            +P  +      
Sbjct: 23  LATTDRFTVWICPDLRSYRQLAEEVAFFLRDQPQCLW-----------RMPAWEVLPYDR 71

Query: 249 SSINEQIDRMRHSATRSLL---ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
            S +  I   R +    LL        ++ +  + +  I   E  +  + Q+K GD ++ 
Sbjct: 72  VSPHHGIVGERFATLARLLNTPAPQGLLLTALPAWLQRIAPPEVVAAHVWQIKPGDMLDI 131

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
             L S L +      D  + +G F   G   +++P+  E+   R+ MFG+DIE I  F P
Sbjct: 132 AALKSRLAEAGMSPADRVLAQGEFAARGGLFDVWPA-TEETPLRIDMFGDDIESIRRFDP 190

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
            + +   ++           +          +      + R   L K   L   Q     
Sbjct: 191 ESQRSGESLSAFTSVPVREVILD----QRGRECFAAAFRTRFPHLRKHPMLSSVQ----- 241

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF-VDESHVTIPQIS 484
                           IE                 L +Y+P+ ++++ V +  V     +
Sbjct: 242 ---------AGRPHPGIEALLPLAYDNTAR-----LSDYLPDGAVIYSVRDIDVRRSAFA 287

Query: 485 GMYRGDFHR 493
              RG F  
Sbjct: 288 EQVRGQFEM 296



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 63/196 (32%), Gaps = 13/196 (6%)

Query: 528 VSATPGSWELEQ--CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
           ++ATP    L Q       V  I  P    +    + S+        + I     +G ++
Sbjct: 723 LTATPIPRTLHQTMSGLRSVSIISTPPAEREAIRTMVSSFDP-HIAREAIRRELYRGGQV 781

Query: 586 LLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
                  +  E +T  L E          H ++   E    +     G+  +LV   ++ 
Sbjct: 782 YYLHNHVQSIERITARLREDVPEAEIGIAHGQMTPAELDRQMLAFYEGRLHILVCTTIIE 841

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLD+     + +  AD  G  +    L Q  GR  R+             +++      
Sbjct: 842 SGLDVANANTLIVERADLLGLSQ----LHQIRGRVGRSHRQAYAYLFTPDARAMTA---- 893

Query: 704 TTRRREKQLEHNKKHN 719
             R R + +  + +  
Sbjct: 894 DARERLQAIAEHSELG 909



 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            +  + DQ  AI  +L  +   +   +++ G  G GKT      A V+    R   V+AP
Sbjct: 567 PFEETDDQAQAIDAVLTDLALDKPMDRVICGDVGFGKTEVAMRAAFVVAESGRQVAVLAP 626

Query: 202 NKILAAQLYSEFKNFF 217
             +LA Q Y+ F   F
Sbjct: 627 TTVLANQHYASFAERF 642


>gi|262382158|ref|ZP_06075296.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262297335|gb|EEY85265.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 1127

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 90/232 (38%), Gaps = 18/232 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A+  LLK  +   +   L G+ GSG   T+A +    +   + +  ++  A   Y +
Sbjct: 22  QVTALDTLLK--NDTSRNIFLKGLNGSGPAMTIASLFTKGRGSYVCVLNDQEEAGYFYHD 79

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                  N V +F S Y                 K   ++   + +R      L + +  
Sbjct: 80  LMQLTASNEVYFFPSAYRRAI-------------KYGHVDPANEILRTEVLSRLQDPDAS 126

Query: 273 IVV--SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            V+     +    + + E   +  +++ +G+ ++   +   L +  +++ D     G + 
Sbjct: 127 FVIVTYPDALAERVVAREVLKENTLKISVGEKLDNMFVSDVLDEYGFEQVDYVYEPGQYA 186

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           + G  +++F S   +  +R+  FG+++E I  F   T      +++I I   
Sbjct: 187 LRGSILDVF-SFSNEFPYRIDFFGDEVETIRTFDVETQLSKEKLDSIYIVPE 237



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 76/201 (37%), Gaps = 17/201 (8%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+   R   + + + IN    +
Sbjct: 713 TLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEV--ERFNPDIIREAINFEMSR 770

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIR---VRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++       +   ++ E L  R +    V   H +++  +  +II D    ++DVL+ 
Sbjct: 771 NGQVFFINNRIQNIYEM-EALVRREVPDARVAVGHGQMEPEKLEKIILDFVNYEYDVLIA 829

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +++  G+D+P    + I +A + G     + L Q  GR  R+              S+ 
Sbjct: 830 TSIVESGIDVPNANTIIINNAQQFGL----SDLHQLRGRVGRSNRKAFCYLLSPPLTSLT 885

Query: 699 LAIDETTRRREKQLEHNKKHN 719
                  RRR + +E+  +  
Sbjct: 886 QE----ARRRLQAIENFSELG 902


>gi|227497779|ref|ZP_03927965.1| transcription-repair coupling factor [Actinomyces urogenitalis DSM
           15434]
 gi|226832806|gb|EEH65189.1| transcription-repair coupling factor [Actinomyces urogenitalis DSM
           15434]
          Length = 1250

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 83/526 (15%), Positives = 159/526 (30%), Gaps = 75/526 (14%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+      A +  +    + P + V  F ++ +    E   PR DT   + S     
Sbjct: 80  PLLVITATTREAEETAAALTCYLPESDVAVFPAW-ETLPHERLSPRADTVATRLSV---- 134

Query: 255 IDRMRHS-----------ATRSLLERNDCIVVSSVSCIY-----GIGSVESYSQMIVQLK 298
           + R+ H                       ++V  V  +      G+G +E        L 
Sbjct: 135 LRRLAHPEDGDAGADGPGTAADPSRGPIRVLVVPVRALLAPVVDGLGELEPI-----HLA 189

Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358
            G  +  +     L    Y R D+   RG F V G  +++FP   +    RV  FG++IE
Sbjct: 190 PGLELGLEATAQRLADAAYTRVDMVENRGEFAVRGGILDVFPP-TQPRPVRVDFFGDEIE 248

Query: 359 EISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE 418
            +S F     + I  V  +   A    +        A                       
Sbjct: 249 SVSSFAVADQRTIEEVGAVTATACREILLTEEVRGRA----------------------- 285

Query: 419 AQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHV 478
            +RL   I    +MLE   +   +E          P   P  L + + +  ++ ++   V
Sbjct: 286 -KRLMGVIPSAADMLEKIAAGIPVEGMESLAPVLVPRMVP--LLDLVGDRLVVGLEPERV 342

Query: 479 TI--PQISGMYRGDFHRKATLAEYGFRLP---SCMDNRPLRFEEWNCLRPTTIVVSATPG 533
                 ++   +       T A  G + P   S      L       L       S T  
Sbjct: 343 RKRAEDLTATTQEFLAAAWTSAASGGQAPVDLSAAAFAHLAEARGLALSTNRGWWSFT-- 400

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
              L+     +   +  P G              +++   ++   A++G  +++      
Sbjct: 401 --SLKASPDTVELDLRDPRG----------YAGSLDEAVTDLGRLAREGWSVVVATDGPG 448

Query: 594 MAEDLTEYLYERNIRVRYMHS-EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
               + + L +  +  R +   +               G   V V       G    +  
Sbjct: 449 PGRRMAQLLGDGGVPARIVTQLDEPADLGAARDDGGVEGDGVVRVTQASAGHGFVAEDLR 508

Query: 653 LVAILDADKEGFLRSKTSLIQTIG--RAARNVNSKVILYADTITKS 696
           L  I ++D  G   +     + +   R+ R+V+   +   D +  +
Sbjct: 509 LALIAESDLTGRASAGPRSRKVMPARRSRRSVDPLSLHSGDLVVHA 554



 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 65/202 (32%), Gaps = 19/202 (9%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
             + +SATP    LE     + E     T   D         T V     + V   I    
Sbjct: 827  VLSMSATPIPRTLEMAVTGLREMSTLATPPEDR----HPILTYVGAYETKQVSAAIRREL 882

Query: 580  QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
             +  ++          + +   + E     R    H ++  +   ++I D    + DVLV
Sbjct: 883  LRDGQVFYVHNRVEDIDRVAARIQEMVPEARVATAHGQMGEVRLEQVIDDFWHKEIDVLV 942

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  GLD+     + +  AD+ G  +    L Q  GR  R        +     K  
Sbjct: 943  CTTIVETGLDVSNANTLIVDRADRMGLSQ----LHQLRGRVGRGRERAYAYFLYPADKP- 997

Query: 698  QLAIDETTRRREKQLEHNKKHN 719
               + ET   R + +  N    
Sbjct: 998  ---LTETALERLRTIATNTDLG 1016


>gi|300934101|ref|ZP_07149357.1| transcription-repair coupling factor [Corynebacterium resistens DSM
           45100]
          Length = 1255

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 107/286 (37%), Gaps = 34/286 (11%)

Query: 144 QTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTG--SGKTFTM---------AKVIEAM 192
           +T   PS     A++ LLK +    K   L GV      KT  M         A    A 
Sbjct: 4   KTPDSPSLKNAPALSGLLKAVSQDSK---LRGVVAHIGDKTLHMQGPEGVWPFAVGAVAS 60

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           Q P +V+      A  L    K      +VE F ++ +    E   P  +T     ++  
Sbjct: 61  QAPVLVVTATGRQAQDLAEMLKAMVGD-SVELFPAW-ETLPHERLSPGVETV----ATRM 114

Query: 253 EQIDRMRHS----ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI--GDSVEQK 306
             + R+R      A     +    + +   S    +  V+ +   I  +++  G  +   
Sbjct: 115 RVLRRLRTGLGGDAKSGRTQPPSELKIVVASARAVLQPVQQHLGNIEPIRLAEGQEITFD 174

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           EL   LV+  Y   D+   RG F + G  ++IFP+  E++  RV  +G+++ E+  F   
Sbjct: 175 ELPERLVELGYTHVDVVAKRGHFAIRGGIVDIFPA-SEELPVRVDFWGDEVSEVRAFSVG 233

Query: 367 TGQKIRNVE--TIKIYANSHYVTPRPTLNTAMKYIKE-----ELKM 405
             + I N+E  T+ +Y     +        A    +E     EL  
Sbjct: 234 DQRTIPNLEPGTVTVYPCRELLLTDEVREKAAALAQEHAGNAELAE 279



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 69/202 (34%), Gaps = 19/202 (9%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQVEDVYDEINLAAQ- 580
             + +SATP    LE     I E     + ++ PP +         Q ED +    +  + 
Sbjct: 839  VLTMSATPIPRTLEMSMAGIREM----STILTPPQDRHPVLTYVGQQEDKHVAAAIRREL 894

Query: 581  -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
             +  ++       +  E     L       R +  H ++   +    ++     +FDVLV
Sbjct: 895  LRDGQVFYVHNRVKTIERAAADLRRLVPEARVVVAHGQMSEEQLETTVKGFWDREFDVLV 954

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  GLDI     + + +A   G  +    L Q  GR  R+       +     +  
Sbjct: 955  CTTIVETGLDIANANTLIVENAHHMGLSQ----LHQLRGRVGRSHERGYAYFLYPPGE-- 1008

Query: 698  QLAIDETTRRREKQLEHNKKHN 719
               + ET+  R   +  N    
Sbjct: 1009 --VLTETSYDRLTTIAQNNDLG 1028


>gi|15889082|ref|NP_354763.1| transcription-repair coupling factor [Agrobacterium tumefaciens
           str. C58]
 gi|15156884|gb|AAK87548.1| transcription-repair coupling factor [Agrobacterium tumefaciens
           str. C58]
          Length = 1165

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 70/447 (15%), Positives = 143/447 (31%), Gaps = 54/447 (12%)

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-----NDCIVVSSVSCIYGIGSVE 288
           P   +P  D       S +      R +A   L+          ++V+  + +  +   +
Sbjct: 66  PVLTLPAWDCLPYDRVSPSADTSARRLAALAGLINHAKKPHPAVVLVTVNAMLQKMAPRD 125

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
               +    + G+ +  +++ + L +  + R       G F V G  +++F    E+   
Sbjct: 126 VIESLGFSARPGNQIRMEDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGTEE-PV 184

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FG+ +E I  F P + + I    ++ +   S       T+             R  
Sbjct: 185 RLDFFGDTLESIRTFDPASQRTIAQARSLDLNPMSEVTLTPDTIGRF----------RKN 234

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
            L   G       L Q ++              +E++          E   T F+Y+ + 
Sbjct: 235 YLSLFGAATRDDALYQAVS-------EGRRYAGMEHWLPLFY-----EQLETAFDYL-KG 281

Query: 469 SLLFVD--------ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
             +  D        E    +       R     K +     ++ P       L  + +  
Sbjct: 282 FRIVTDHTAKEAAKERSKLVLDYYEARRASGETKGSTQGAPYK-PVSPGQIYLDGKSFEA 340

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG--LVDPPVEIRSAR--TQVEDVYDEIN 576
              +   V  TP  +     +G  V  +    G     PP E  S       +     I 
Sbjct: 341 ALASVNAVRLTP--FNEHDSEGRPVATLDAHVGPRWARPPTEGDSEERVNVFDLAVKHIA 398

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               +G ++L+T  ++   + L + L E  +       ++K +  ++ ++ L  G+    
Sbjct: 399 ERRAKGWKVLITGWSEGSLDRLLQVLNEHGLE------KIKPVTSLKEVKKLGKGEAACA 452

Query: 637 VGINLLREGLDIPECGLVAILDADKEG 663
           V    L  G +     L  I + D  G
Sbjct: 453 VLS--LEAGFETG--TLAVIGEQDILG 475



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 93/260 (35%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 770  HVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMA-VRTFISPFDPLVIRETLMREHYR 828

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +            D+  +L      ++V   H ++   E  +I+     GK+DVL+  
Sbjct: 829  GGQSFYVCPRLADLADIHAFLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLST 888

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLD+P    + +  AD  G  +    L Q  GR  R+      L+   + K    
Sbjct: 889  TIVESGLDVPTANTLIVHRADMFGLAQ----LYQLRGRVGRSKVRAFALFTLPVNK---- 940

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             +     RR K                  +++ +D +       ++        +L  ++
Sbjct: 941  VLTTMAERRLK------------------VLQSLDTLGAGFQLASHDLDIRGAGNLLGEE 982

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 983  QSGHIKEVGFELYQQMLEEA 1002


>gi|297171405|gb|ADI22408.1| transcription-repair coupling factor (superfamily II helicase)
           [uncultured Planctomycetales bacterium HF0500_02G17]
          Length = 1114

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 91/245 (37%), Gaps = 32/245 (13%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+A L + ++ R +  ++ G  GS  T     +  +M+RP +++  +   A     E  
Sbjct: 5   EAVAGLARALNKRRRA-VVTGAVGSSTTLLAGVLARSMERPVVLVVAHIDDADDALEELT 63

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS----INEQIDRMR----------- 259
                              P   +P  +    +         E+I   R           
Sbjct: 64  TLG---------------LPALRLPALEVLPGETDIALDLFAERIAVQRAVMAGGDGSGE 108

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
             A R  +  +  I+    + + G+ + E   ++    + G+  +  E+   L +  Y R
Sbjct: 109 TGADRVSMHPHSVIIAPVQALMQGVPTPERLDKLARTFRPGERHDMTEVTRWLAEAGYTR 168

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHL-EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
            D     G F V G  +++FP         R+  FG++IE I+E    T    R +++++
Sbjct: 169 MDAVEEPGDFAVRGGILDVFPPGGFGQPPVRLDFFGDEIERINEIDVETMGSDRKMDSVE 228

Query: 379 IYANS 383
           + A S
Sbjct: 229 LIAAS 233



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 67/194 (34%), Gaps = 15/194 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L         I      P        E+     +   +   I     +
Sbjct: 714 VLTLSATPIPRTLHMSMLGLRDISSLTTPPLERRAIVTEVIPYNGR--RIAQAIARELSR 771

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++          + + + + +     + +  H ++   E  E++      + DVLV  
Sbjct: 772 NGQVYFVHNRVHNIKSIADNVRQLAPDAKIVIGHGQMPPNELEEVMLKFMRREADVLVST 831

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I DAD+ G       L Q  GR  R+ +         + + ++ 
Sbjct: 832 TIIESGIDISSANTMIINDADRFGL----ADLHQLRGRVGRSSHRAYCYLLLPVDRPVR- 886

Query: 700 AIDETTRRREKQLE 713
              E  ++R K +E
Sbjct: 887 ---EVAQKRLKAIE 897


>gi|294668966|ref|ZP_06734053.1| transcription-repair coupling factor [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309139|gb|EFE50382.1| transcription-repair coupling factor [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 325

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 81/207 (39%), Gaps = 15/207 (7%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +V+  +   A +L + +  F PH+                ++P  +T   +  S ++ + 
Sbjct: 37  VVLTQDAEQALRLQTAWLFFRPHDT-------------AVFLPDWETLPYERFSPHQDLV 83

Query: 257 RMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
             R SA   +     D + V   + +  +  V   +     LK G +++   L S LV  
Sbjct: 84  SERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKSDLVDA 143

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            Y      +  G F V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V 
Sbjct: 144 GYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTETQRTISPVS 202

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEE 402
            I++     + T            +EE
Sbjct: 203 EIRLLPAHEFPTDSEAQKIFRSRFREE 229


>gi|119484480|ref|ZP_01619097.1| Transcription-repair coupling factor [Lyngbya sp. PCC 8106]
 gi|119457954|gb|EAW39077.1| Transcription-repair coupling factor [Lyngbya sp. PCC 8106]
          Length = 1147

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 80/210 (38%), Gaps = 6/210 (2%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L GV+   K    + + +       V+      A +  ++ +         Y  S    Y
Sbjct: 31  LNGVSRLPKGLVASALAQEAGLNLFVVTATLEEAGRWSAQLEAMGWSLVHFYPTSEGSPY 90

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
            P       +    +   + + ++    +  +S       IV +  S    +  VE++  
Sbjct: 91  DPSN---SEEMIWGQMQVLADLVN--PDAREKSAENGKIAIVATERSLQPHLPPVEAFKP 145

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             + LK G + + K+L   L    Y+R  +    G +   GD ++IFP   E +  R+  
Sbjct: 146 YCLTLKQGTTQDSKQLDEQLATLGYERVSLVETEGQWSRRGDIVDIFPVAAE-LPVRLEW 204

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           FG+++E I EF P T + +  +  + +   
Sbjct: 205 FGDELERIREFDPTTQRSLDKIPQLVLTPT 234



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 74/196 (37%), Gaps = 15/196 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I E  +  T    PP   R  +T +     E +   I    
Sbjct: 739 VLTLTATPIPRTLYMALSGIREMSLITT----PPPSRRPIKTHLSPYNDETIRTAIRQEL 794

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++   V      E+ +  + E     R    H ++   E   I+     G+ ++LV
Sbjct: 795 DRGGQVFYVVPRIEGIEEKSSKIREMVPSARIAVAHGQMNAAELESIMLTFNAGEAEILV 854

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + I DA + G  +    L Q  GR  R+           +    
Sbjct: 855 CTTIIESGLDIPRVNTILIEDAHRFGLAQ----LYQLRGRVGRSGVQAHAWLFYPVNADG 910

Query: 698 QLAIDETTRRREKQLE 713
           + A+ +  R+R + ++
Sbjct: 911 RAALSDDARKRLRAIQ 926


>gi|257464856|ref|ZP_05629227.1| transcription-repair coupling factor [Actinobacillus minor 202]
 gi|257450516|gb|EEV24559.1| transcription-repair coupling factor [Actinobacillus minor 202]
          Length = 1151

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 117/320 (36%), Gaps = 38/320 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +  Q L  + G   T  + +  +  Q   +V+ P+   A +L           ++  F  
Sbjct: 17  QDHQTLGNLIGHSDTLAIVQASQQFQGLTVVVTPDTRTALRL---------EKSLLSFTK 67

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-NDCIVVSSVSCIYGIGS 286
                 P    P  +T      S ++ I   R SA   L +      ++   + +  +  
Sbjct: 68  L-----PVQLFPDWETLPYDNFSPHQDIISARLSALFQLQQGQKQIFLLPINTLLQKVCP 122

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
               +  ++ +K GD    ++L   L    Y+  +  +  G + V G  ++++P    + 
Sbjct: 123 PSYLANNVLLIKKGDRFSIEKLRLQLENAGYRAVEQVLEYGEYAVRGALLDLYPM-GANS 181

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ I  F     + I  ++ I +     +    PT +  ++Y + + + +
Sbjct: 182 PYRLDFFDDEIDTIRTFDVDNQRTIEQIDEINLLPAHEF----PTDSNGIEYFRGKFREQ 237

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             E+ +     E + + Q+++              IE +          E   +LF+Y+P
Sbjct: 238 FGEIRR-----EPEHIYQQVSK-------GILNAGIEYWQPLFF-----EQMASLFDYLP 280

Query: 467 EDS-LLFVDESHVTIPQISG 485
           E +  +   +      Q   
Sbjct: 281 EQTLFITFADIQQKAEQFQQ 300



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 68/180 (37%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R +   V  + + I     +
Sbjct: 757 ILTLTATPIPRTLNMALNGMRDLSIIASPPARRLSIKTFVRQSDDTV--IKEAILREILR 814

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+  + L E     R +  H +++  E   ++ D    +F++LV  
Sbjct: 815 GGQVYYLHNDVATIENTAQQLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCS 874

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K +  
Sbjct: 875 TIIETGIDVPTANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYMLTPPPKMLTK 930


>gi|260550143|ref|ZP_05824357.1| transcription-repair coupling factor [Acinetobacter sp. RUH2624]
 gi|260406898|gb|EEX00377.1| transcription-repair coupling factor [Acinetobacter sp. RUH2624]
          Length = 1153

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/465 (13%), Positives = 148/465 (31%), Gaps = 65/465 (13%)

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
           +++       +++A N    AQL SE + +     +      ++    +   P  D   E
Sbjct: 36  EIVNQHSSLLVLVARNNQHVAQLESELEFYGIKPTI---FPDWEILPYDRLSPHQDIVSE 92

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           + + ++              + +   +++S+ +    +            +++G   + +
Sbjct: 93  RLAILSN-------------MPQQGVLLISASTLAQRVAPYSWVLGKHFDIRVGQKFDLE 139

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +    LV+  Y   D     G F V G  ++IF +  ++   R+ +F N+I+ +  F P 
Sbjct: 140 QQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIF-ASGQEAPIRIDLFDNEIDSLKFFDPE 198

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           T +    +++  +     +                  + R  E        +        
Sbjct: 199 TQRTTTTLKSFTVLPAKEFPLKEARSV---------FRDRYSEFFPTANPKK-------- 241

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV-----DESHVTIP 481
               + +    +   IE Y      +   +       Y+P++ ++        +      
Sbjct: 242 NPIYQDVLDGIASPGIEFYLPLFFDKEQMQSQSMFTTYLPKNCIVITTSDVDTDLTNFWK 301

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           ++   Y    H           L    +N      ++  +     +VSA      +E+  
Sbjct: 302 EVMRRYEDRRHNIDQPILAPEELFISPNNLLSALNQFPRM-----LVSA----ETIEEKA 352

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G +  +  +P  L   P + +     V+   DE N        +LL   +    E L + 
Sbjct: 353 GALNLKTEQPPKLPVDPKKEKPFAA-VKKYIDEANHP------VLLVAESAGRRESLKDA 405

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L           S +  +  +E     +  +F + +    L  GL
Sbjct: 406 LR----------SSLGEIPNVENFEQFKTSQFAIAITNAPLDRGL 440



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 11/193 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-DVYDEINLAAQQGL 583
            + ++ATP    L      + +  I  T            +   +  + + I     +G 
Sbjct: 756 MLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEHTDASIKEAILRELLRGG 815

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   E +       R    H +++  E  ++++     +++VLV   +
Sbjct: 816 QVYFLHNEVDTIERAAENIRMLVPEARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTI 875

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +  SI+   
Sbjct: 876 IETGIDVPNANTILIERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVPSIKHLK 928

Query: 702 DETTRRR-EKQLE 713
            +  +R    Q  
Sbjct: 929 GDAEKRLDAIQRA 941



 Score = 38.9 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 84/233 (36%), Gaps = 33/233 (14%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q G ++ + V T    ++  E   +   +  +R+  +         
Sbjct: 638 GKTEVAMRAAFVAVQNGKQVAVLVPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTH 697

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++ I DL  GK D++VG + LL+E +   + GL+ + +  + G    +        +A R
Sbjct: 698 LKNIEDLADGKVDIVVGTHKLLQENVQFKDLGLMVVDEEHRFGVRDKERI------KALR 751

Query: 681 NVNSKVILYADTITKSIQLA---------IDETTRRREKQLEHNKKHNINPQSVKEKIME 731
                + L A  I +++ +A         I     RR       ++H     S+KE I+ 
Sbjct: 752 ADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEH--TDASIKEAILR 809

Query: 732 VIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR-----KQMHLAADNLN 779
            +    L       +  +   +  + +  +  +   R      QM      L 
Sbjct: 810 EL----LRGGQVYFLHNEVDTIERAAENIRMLVPEARVAVAHGQMRE--RELE 856


>gi|257455867|ref|ZP_05621086.1| transcription-repair coupling factor [Enhydrobacter aerosaccus
           SK60]
 gi|257446715|gb|EEV21739.1| transcription-repair coupling factor [Enhydrobacter aerosaccus
           SK60]
          Length = 1182

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 134/445 (30%), Gaps = 54/445 (12%)

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
           T   +       R  +V+  ++    QL +E    F       F  +      E   P  
Sbjct: 25  TSLTSSESGQQNRLKVVVTRDQNQLNQLETELA--FSGVDAHVFPDWETLTYDE-LSPHH 81

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           D         +E+I  + H  T  +L      ++S  + ++ +            L +GD
Sbjct: 82  DIV-------SERIHLLTHMPTDGIL------LISVQTLMHRVAPASWLLGQHFDLSVGD 128

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
           + +       L    Y   D     G F V G  I++F +  +    R+ +F ++IE I 
Sbjct: 129 TFDVATERRKLATAGYHAVDNVFEPGEFAVRGSVIDLF-AIGQPFPVRIDLFDDEIESIR 187

Query: 362 EFYPLTGQKI--RNVETIKIYANSHYVTPRPTLNTAMKYI-----KEELKMRL------I 408
            F P T + +   +++ +K      YV    +   + + I      + L  R        
Sbjct: 188 FFNPQTQRSLTQADLDELKDSDPHQYVKFMNSQKKSGETIGKINSFQILPAREFPLDEGK 247

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
           E  +            R       +    +   +E Y       +  +     F Y+P+D
Sbjct: 248 ETFRANFASTFANTSARRFELFNDVMNGIAPAGVEYYQPLFFEADTWQNGSDFFSYLPKD 307

Query: 469 SLLFVDE-----SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP 523
           SL  VD            QI   Y    H                 +  L    +N    
Sbjct: 308 SLFIVDNQIETAYQNFWQQIQTRYNDRRHDIEKPI-------VAPQDLYLAEHIFNEKIA 360

Query: 524 TT--IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
               I+ S  P      +   I       P   VD  +         + +   I    Q 
Sbjct: 361 QYPRIITSEQPIDD--TKAGAINALVDTPPDLTVDHKLA--------QPLQRLIAFREQF 410

Query: 582 GLRILLTVLTKRMAEDLTEYLYERN 606
              ILL   T    E L+E L +R 
Sbjct: 411 AKPILLVAETAGRREILSELLQKRF 435



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 11/189 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            + ++ATP    L      +    I  T              + +++  + I     +G 
Sbjct: 785 VLSMTATPIPRTLNMALSGMRNMSIIATPPARRLAIKTFVMPKSDNLLKEAILRELLRGG 844

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++ L        E + E + E     RV   H ++K  E  +I++     K +VLV   +
Sbjct: 845 QVFLLHNDVASIERMAETVRELVPESRVAVAHGQMKERELEQIMQSFYHKKHNVLVCTTI 904

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK----SI 697
           +  G+DIP    + I  ADK G  +    L Q  GR  R+ +           K      
Sbjct: 905 IETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYCYLLVPSIKGLTSDA 960

Query: 698 QLAIDETTR 706
           Q  +D  +R
Sbjct: 961 QKRLDAISR 969


>gi|163731753|ref|ZP_02139200.1| transcription-repair coupling factor [Roseobacter litoralis Och
           149]
 gi|161395207|gb|EDQ19529.1| transcription-repair coupling factor [Roseobacter litoralis Och
           149]
          Length = 1154

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 81/510 (15%), Positives = 163/510 (31%), Gaps = 74/510 (14%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +    + GV        +   +E    P + +A +    A L +  +   P   V  F  
Sbjct: 4   QTHITISGVPEGYDARVLLDEVEKHSAPLMHIARDDKRLAALQAALRFMAPDMPVVVF-- 61

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER---NDCIVVSSVSCIYGI 284
                      P  D       S N  I   R +   +L+        ++ +  +    I
Sbjct: 62  -----------PGWDCLPYDRISPNADISAQRMATLAALIHGMPERFILLTTLNAASQKI 110

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
            +           K+G  +++K L + LV+  + +       G + V G  I+IFP   +
Sbjct: 111 PARAVLKDAAFSAKVGSRIDEKALRNFLVRMGFVQSPTVTEPGDYAVRGGIIDIFPP-GD 169

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
               R+ +FG+ ++    F   T +    ++ +++   S  +     +    +  + E  
Sbjct: 170 MGPVRLDLFGDTLDGARRFDSATQRTTEKLDLVELAPVSEIILDEAAITRFRQNYRIE-- 227

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                    G                E +      Q  E++  +           TLF+Y
Sbjct: 228 -----FGAAGTD----------DPLYEAISAGRKHQGAEHWLPFFHDGLE-----TLFDY 267

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +PE + + +D+    + +       D +    +          M NR      +    P 
Sbjct: 268 LPE-ASVSLDDQITAVREARWDSIADQYETRRI---------AMSNRSKMDSVYKPCPPE 317

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR------SARTQ-----VEDVYD 573
            + ++      E+   + + +  + +PTGL       R        R Q        + D
Sbjct: 318 ALYLNNAAWDAEVAGRRVLQLAPLPQPTGLNVTDAGARIGRNFAPERQQESLSLFGALAD 377

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I      G  +L+   ++   E LT  + +  +              I +    R+GK 
Sbjct: 378 HIKAKMAAGP-VLIASYSEGARERLTGLIEDEGLAEA-----------IPVPNAARIGKR 425

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEG 663
            + + +  L  G + P  GL  I + D  G
Sbjct: 426 GLYLAVWALEHGFEAP--GLTVISEQDVLG 453



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 72/187 (38%), Gaps = 9/187 (4%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 746 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA-IRTYVSEFDTVTLREALLREHYR 804

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++  +L E+   + Y+  H ++   E  + +     GKFD+L+  
Sbjct: 805 GGQSFYVVPRISDLPEIEAFLTEQLPELTYVVAHGQMAAGELDDRMNAFYDGKFDILLAT 864

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+               +  
Sbjct: 865 TIVESGLDIPTANTMVVHRADMFGLAQ----LYQIRGRVGRSKTRAYAYLTTKPRARLTA 920

Query: 700 AIDETTR 706
             ++  R
Sbjct: 921 TAEKRLR 927


>gi|227542464|ref|ZP_03972513.1| transcription-repair coupling factor [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181662|gb|EEI62634.1| transcription-repair coupling factor [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 1218

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 80/462 (17%), Positives = 162/462 (35%), Gaps = 58/462 (12%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           AIA  +K +                + + +  +   +  P +V+  +   A  L +E   
Sbjct: 16  AIAGAVKNLGEETLHIT---APDEVRAWLVGALSAHV--PLLVVTASGREAEDLTAELTA 70

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
                 V Y+ S+ +    E   P  D  I +++ +   +D +            D +V 
Sbjct: 71  MMGD-KVMYYPSW-ETLPHERLSPGVDI-IGQQAKVLHHLDSL------------DVVVT 115

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           ++      + + E   +  V + +G+    +EL+ SLV + Y R D+   RG F V G  
Sbjct: 116 AARGLAQPLVN-EVTGRDPVTVTVGEDYPFEELIDSLVFRSYSRVDLVAARGEFAVRGGI 174

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI--RNVETIKIYANSHYVTPRPTLN 393
           I+IFP    +   RV  +G+++ EI+ F     +      ++ +++Y             
Sbjct: 175 IDIFP-TTANNPVRVEFWGDEVTEITTFAVADQRTYSDGQLKKVELYPARALP------- 226

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                I +E+K R   L +           Q +   L  +    S   +E     LT   
Sbjct: 227 -----ITDEIKKRAEALARTYGG------NQALAQILGKVAEGISADGMETLIPVLT--- 272

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC-----M 508
              P  T+ + +PE + + + +      ++  +   D        E G+ L +      +
Sbjct: 273 -DSPLVTIVDKLPEGAHVLLVDPERIRTRVGDLKATDTE----FLEAGWELAAMGGDGPV 327

Query: 509 DNRPLRFEEWNCLRPTTIVVSA---TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565
           D++ L  E  +     ++ V+A       W L     +  +            V  R   
Sbjct: 328 DHKDLDLEPSSYRSLESLEVTAREHEIPLWTLTPPGMMASDDAETLPLSFGDLVRPRGDE 387

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
            ++  + +++      G   +     K       + L+ER I
Sbjct: 388 KKISQLMEQLLAHTLAGGAAVYISPQKANCARFGDKLHERGI 429



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     T ++ PP + R   T V   ED      +  + 
Sbjct: 784 VLTMSATPIPRTLEMSMSGIREM----TTILTPPQDRRPVLTYVGAQEDKQVAAAIRREL 839

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++       +  E+    L E     R    H ++   +  + ++     +FDVLV
Sbjct: 840 LRDGQVFYVHNRVKSIEERARQLRELVPEARIVVAHGQMSEEQLEKTVQGFWDREFDVLV 899

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + + +A   G  +    L Q  GR  R+       +        
Sbjct: 900 CTTIVETGLDIANANTLIVENAHHMGLSQ----LHQLRGRVGRSRERAYAYFLYPKG--- 952

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET+  R   +  N    
Sbjct: 953 -QVLTETSYERLTTIAQNNDMG 973


>gi|315924903|ref|ZP_07921120.1| transcription-repair coupling factor [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621802|gb|EFV01766.1| transcription-repair coupling factor [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 1144

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 85/506 (16%), Positives = 159/506 (31%), Gaps = 72/506 (14%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +++K + +   V  L  V    K F    + EA +   + +      A         + P
Sbjct: 16  RIVKRLRAGASVN-LSNVKDGLKGFLALYLREATKGHLLYITATDREALAKAERLAQWAP 74

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
            N V YF             P  D +       + +I   R      LL R   ++ +SV
Sbjct: 75  DN-VLYFPEE----------PIHDYF---SDVHSREITEKRMQVLEQLLGRRKYVICTSV 120

Query: 279 S-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           S  +  + +  +  +  + LK G ++E  +L + L  + Y R       G +   G+ ++
Sbjct: 121 SNLLKKMPASRALRKRFLTLKPGMTLEPDDLAAQLSDRGYIRVSQVESAGQYAKRGEIVD 180

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           +FP        R   F +++E + +    T +    +  IKI      +  R        
Sbjct: 181 VFPVGAA-TGVRADFFDDELESLKQMDMATQRSALTLTRIKIAPVRESILSRGEREQL-- 237

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
                    L  +           L  R+    E +E   +  +             GE 
Sbjct: 238 ---------LKTMAARYGGAAHAALIDRL--LAEPMEHDETFSAF-----------AGEG 275

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
             +L  Y+ + +++F DE                    TL + G   P          E+
Sbjct: 276 -SSLESYLGKQAVIFWDEWEQAAAAAETFLEKSREDFETLIDAGELFPEEG-------EK 327

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEIN 576
           +  L   T  +S  P          +  +         D     I S   +V    D + 
Sbjct: 328 FWELDALTAALSRRP-----TVKANLFSDMRSEAAETFDMSARSIESFVGRVPYFCDMLK 382

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              + G RI++   +    + +   L E+++ V Y       +           G+F   
Sbjct: 383 QHLENGDRIVIGCRSAGGEKAVRTLLGEQDLGV-YSDGTTPGVY-------FARGEF--- 431

Query: 637 VGINLLREGLDIPECGLVAILDADKE 662
                  EG ++P   LV I  ++  
Sbjct: 432 ------SEGFELPAEHLVFISQSEIF 451



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 73/196 (37%), Gaps = 20/196 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--EDVY---DEINLAA 579
            + +SATP    L      I +  +    + +PP   R  RT V  ++     D I    
Sbjct: 750 VLTLSATPIPRTLHMSMTGIRDMSV----IAEPPAGRRPVRTYVMRDNAVVVGDAIAREI 805

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
           ++G ++       +   +  + +       R +  H ++       I++      +DVLV
Sbjct: 806 RRGGQVYFVHNCIKDLNERADQVRRMVPGARVVTAHGQMPGEALERIMQAFVDKAYDVLV 865

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLD+     + + D D  G  +    L Q  GR  R+ N              
Sbjct: 866 TTAIVESGLDVRNANTMVVDDGDAMGLSQ----LYQLRGRVGRSSNQAFCYILYK----- 916

Query: 698 QLAIDETTRRREKQLE 713
           + A+ +  ++R K ++
Sbjct: 917 RRALSDVAQKRLKAIK 932


>gi|284989494|ref|YP_003408048.1| transcription-repair coupling factor [Geodermatophilus obscurus DSM
           43160]
 gi|284062739|gb|ADB73677.1| transcription-repair coupling factor [Geodermatophilus obscurus DSM
           43160]
          Length = 1179

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 77/486 (15%), Positives = 160/486 (32%), Gaps = 53/486 (10%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+   +  A  +  + + F P    E F ++ +    E   PR DT   + + + + 
Sbjct: 54  PVLVVTAGERDADAVADQLRCFLPDRRTEVFPAW-ETLPHERLSPRADTVGRRLAVLRD- 111

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
              + H      ++    ++V+ V  +    +      + V+L+ GD+ E  ++  +L  
Sbjct: 112 ---LTHPGANGTID----VLVAPVRSVLQPLAPGLGDLVPVELRPGDTAELDDVARALAD 164

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y R ++   RG F V G  +++FP   E    RV  +G++++E+  F     + +   
Sbjct: 165 AAYTRVELVEKRGEFAVRGGLLDVFPP-TEPHPVRVEFWGDEVDELRYFSAADQRSLDER 223

Query: 375 -ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            E +        +                L  ++ E        E   L + +      L
Sbjct: 224 PERLWAPPCRELL----------------LTDQVRE-RAAALAAEHPGLLEILGR----L 262

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
               + + +E+ +  L G    +    L + +P  + + V +      + + + R     
Sbjct: 263 AEGIAVEGMESLTPALIGDAHMQL---LTDLVPAGTHVLVCDPERVRSRAADLVRTAEEF 319

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
            A                 L    +  L             W       +  E+      
Sbjct: 320 LAASWATAAEAGEAP--IDLGASSFRALAEIEAAARGRGLPWWTTGAFTLAAEEDDTHVT 377

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L    VE  S    V    +++   ++QG R+++T      A+   +   E ++  R + 
Sbjct: 378 LDATTVERFS--GDVPRAIEQLRDWSRQGWRVVVTFAGPGPAQRAADQFTEADLGTRLVP 435

Query: 614 SEVKTL-ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF-LRSKTSL 671
                   R+              V    L  G  +P  GL  + + D  G    S    
Sbjct: 436 DIAGAPDPRLTH------------VTQGSLETGFALPGVGLALLTEHDLTGQRGTSMRDA 483

Query: 672 IQTIGR 677
           ++   R
Sbjct: 484 VKMPAR 489



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 70/202 (34%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQVEDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP E           +D      +  + 
Sbjct: 777 VLSMSATPIPRTLEMSLTGIREM----STILTPPEERHPVLTYVGAWDDKQMAAAIRREL 832

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++ +     +  +     +       R    H +++  E   I+      ++DVLV
Sbjct: 833 LRDGQVFVIHNRVQSIDKAAAKIRNLVPEARVAVGHGQMREHELERIMVGFWEKEYDVLV 892

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + +  AD  G  +    L Q  GR  R        +    ++  
Sbjct: 893 ATTIVESGLDIPNANTLIVDRADTFGLSQ----LHQIRGRVGRGRERAYAYFTYDPSRP- 947

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET+  R   + HN    
Sbjct: 948 ---LTETSVDRLTTIAHNTDLG 966


>gi|94495555|ref|ZP_01302135.1| transcription-repair coupling factor [Sphingomonas sp. SKA58]
 gi|94424943|gb|EAT09964.1| transcription-repair coupling factor [Sphingomonas sp. SKA58]
          Length = 1169

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 150/444 (33%), Gaps = 57/444 (12%)

Query: 225 FVSYYDYYQPEAY---VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI--VVSSVS 279
                  + PE     +P  D      +S + +    R +   +L  +      VV+++S
Sbjct: 68  IADTAPTFAPELELIDIPAWDCLPYDRASPSLRAASARLAGLHALQVKPRGPQLVVTTLS 127

Query: 280 CI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
            +     +     Q++ +L   + +  + L   L    Y R D    RG F + G  +++
Sbjct: 128 AMTQRTLTPFRVRQLVAKLAPKERIAIQRLADMLQANGYVRTDTVHDRGEFAIRGGIVDL 187

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           FP   ED   R+  FG++IE +  F P   +   +VE   +   S  +    T+      
Sbjct: 188 FPG-GEDQPLRLDFFGDEIETVRRFDPADQRTTGSVEGFTLLPASEALLDEDTIKRF--- 243

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
                  RL   E  G       L Q ++              +E++          E  
Sbjct: 244 -------RLRYRETFGATATGDPLYQAVS-------DGRRLAGMEHWLPLFE-----EKL 284

Query: 459 PTLFEYIPEDSLLFVDE-----SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
             L +++  D+++  D      +      I   +      K++  + G   P   D   L
Sbjct: 285 VPLTDHLG-DAVIVRDSGVAGAAENRFEAIRDYHANRVQAKSS--DPGSYRPLKPDALYL 341

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
              EW+    +  + + TP   E E    +           VD P +    R Q  ++YD
Sbjct: 342 DAAEWDAAVASLPMHATTP-FHEPESATVLDF--------AVDGPRDFTPERAQNSNIYD 392

Query: 574 ----EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                I+   ++  ++++   +    E L+  L +  +        +   +  +    L 
Sbjct: 393 AVSAHIDGLRRKKKKVVIASYSTGARERLSGLLADHGVAR------IAAADDWQEALGL- 445

Query: 630 LGKFDVLVGINLLREGLDIPECGL 653
            G   V + +  L  G   P+  +
Sbjct: 446 AGDGRVALIVLGLDHGFTAPDVAV 469



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 71/192 (36%), Gaps = 15/192 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
             + ++ATP    L+     + E  +  T  VD       +      V  + + +     
Sbjct: 772 HVLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLAVRTYVMPWDGVV--IREALLREHY 829

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G +    V       ++ E+L      V+ +  H ++   +  E +      ++DVL+ 
Sbjct: 830 RGGQSFFVVPRIADLTEVEEFLRNEVPEVKPIVAHGQMSATDVEERMSAFYDKRYDVLLS 889

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  GLDIP    + I  AD+ G  +    L Q  GR  R+           +T    
Sbjct: 890 TTIVESGLDIPSANTLIIHRADRFGLAQ----LYQLRGRVGRSKTRAYAY----MTTPAN 941

Query: 699 LAIDETTRRREK 710
             I +T  +R K
Sbjct: 942 RIITDTAEKRLK 953


>gi|148554437|ref|YP_001262019.1| transcription-repair coupling factor [Sphingomonas wittichii RW1]
 gi|148499627|gb|ABQ67881.1| transcription-repair coupling factor [Sphingomonas wittichii RW1]
          Length = 1195

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/425 (17%), Positives = 138/425 (32%), Gaps = 51/425 (12%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            + +A +      L    + F P   V  F             P  D      +S   + 
Sbjct: 49  LVFVAADDQAMQSLADAARFFAPELTVLTF-------------PAWDCLPYDRASPALRA 95

Query: 256 DRMRHSATRSLLERNDCIV---VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
              R +   +L  +    V    +  +    + +     Q++ +L  G+ V++  L + L
Sbjct: 96  TSERLATLHALQGKPRGPVLVATTVNAVTQRVLTPFRIRQLVARLAPGERVDRDRLAAML 155

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
               Y R D    +G + V G  +++FP+  E  A R+  FG++IE + +F     + I 
Sbjct: 156 QANGYIRTDTVTEQGEYAVRGSLVDLFPA-GEPHALRLDFFGDEIESVRQFDATDQRTIG 214

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            V+   +   S  +    T+             R    E+ G       + Q ++     
Sbjct: 215 PVDGFTLLPASEALLDEETIKRF----------RGRYRERFGASATGDPIYQAVS----- 259

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI-PEDSLLFVDESHVTIP---QISGMYR 488
                    ++++          E   TLF+++ PED +L    S        +    Y 
Sbjct: 260 --DGRRLAGMDHWLPLFE-----ERLETLFDHLAPEDLILREAGSIKAAEARFEAIADYH 312

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP-GSWELEQCQGIIVEQ 547
            +  R  T     +R P       L  +EW        +   TP    E  +   + V+ 
Sbjct: 313 ANRVRARTTDPGSYR-PLEPGELYLAADEWRTAIADRPIHLVTPFAEPESARVLDLGVD- 370

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
                G  D   E        + V + +    + G R++L   +    E     L E  +
Sbjct: 371 -----GARDFAPERTQGVNIYDAVIEHVEALGKAGKRVVLASYSTGSRERFAGLLAEHGL 425

Query: 608 RVRYM 612
               +
Sbjct: 426 DRGDL 430



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 70/190 (36%), Gaps = 16/190 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
             + ++ATP    L+     + E  +  T  VD       +      V  + + +     
Sbjct: 800 HMLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLAVRTYVAPWDGVV--IREALLREHY 857

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G +  L     +   D+ +YL +    V Y+  H ++   E  E +      KFD+LV 
Sbjct: 858 RGGQSFLVTPRIKDLPDIEDYLRKEVPEVSYVVAHGQMAAGEVEERMSAFYDKKFDILVS 917

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  GLDIP    + +  AD+ G  +    L Q  GR  R+                 
Sbjct: 918 TTIIESGLDIPSANTLIVNRADRFGLAQ----LYQLRGRVGRSKTRAYAYLTTG-----D 968

Query: 699 LAIDETTRRR 708
             + ET  +R
Sbjct: 969 RGLTETAEKR 978


>gi|238791842|ref|ZP_04635479.1| Transcription-repair-coupling factor [Yersinia intermedia ATCC
           29909]
 gi|238728946|gb|EEQ20463.1| Transcription-repair-coupling factor [Yersinia intermedia ATCC
           29909]
          Length = 1148

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 117/298 (39%), Gaps = 37/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE    P +++ P+   A +L  E + F                +P 
Sbjct: 22  LTGSACAVECAEIIERHDGPVMLITPDMQTALRLRDEVQQF--------------SLRPV 67

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
           + +   +T      S ++ I   R S    L      +++  ++ +   +   E      
Sbjct: 68  STLSDWETLPYDSFSPHQDIISARLSCLYHLPAMERGVIILPINTLMQRVCPHEFLHGHA 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K G  + + +L + L +  Y+  D  +  G F   G  ++++P   E+  +R+  F 
Sbjct: 128 LVMKKGQHLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEE-PYRIDFFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           +DI+ +  F   + + +  VE I +     +   +    TA++  + + + +        
Sbjct: 187 DDIDSLRVFDVDSQRTLSEVEQINLLPAHEFPIDK----TAIELFRSQWREQ-------- 234

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
              E +R  + I    + +        IE +          +P P+LF Y+P ++LL 
Sbjct: 235 --FEVRRDAEHI---YQQVSKGIWPAGIEYWQPLFFS----QPLPSLFSYLPGNTLLV 283



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  + + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--IREAILREILR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E  T+ L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLYNDVENIEKATQRLAELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 922


>gi|293400065|ref|ZP_06644211.1| transcription-repair coupling factor [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306465|gb|EFE47708.1| transcription-repair coupling factor [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 1149

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/437 (15%), Positives = 151/437 (34%), Gaps = 66/437 (15%)

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
                +   ++  N   A +LY +       + V  F              R +      
Sbjct: 40  YRKKPQSMFIIKNNAYTAQKLY-DRLECLLEDDVLLFSVEESL--------RVEAIAASP 90

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
            S   Q++ M     + L +     V+++ + I    SV+ + Q  + ++  D ++ ++L
Sbjct: 91  ESKAAQMETMA----KLLDKHPYICVMNAAAAIRFQPSVDIFQQHFIHIRQDDVLDYEQL 146

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
              L +  Y   +       +   G  I+++  + E    R+  F N +E +  F   T 
Sbjct: 147 KQLLFEAGYAYVNRVDQPLCYAARGGIIDVYSMNYE-HPIRIEFFDNLVESVRFFDISTQ 205

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + I  ++ + I   ++ +     +   ++   +EL ++  +L     L    +L  ++  
Sbjct: 206 RTIELIKEVTIIPANNLLFTDEEIGCIVERANQELAIQQKQLS----LSFRDQLISQVNE 261

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYR 488
           DL++L    +   +  Y  +L      +   T+ +Y+ +D+ + V         I  +  
Sbjct: 262 DLDLLANRHAENHLYRYYAFL------DQANTICDYV-KDASIVVSSKEEVNDTIRHIQE 314

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
            +      L + G  L         +F  +  L                   + +   ++
Sbjct: 315 ENIAYLQELFQEGSAL--------YKFGVFEDL------------------SKILGKHKV 348

Query: 549 IRPTGLVDPPVEIRSARTQV----------EDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           I     VD     +   +Q+          E    EI  A+ +  R+L   L       +
Sbjct: 349 IEFGMFVDYK---KPITSQIMSMSLGDINLERTIQEIISASHR-HRVL-LCLDHHEISQV 403

Query: 599 TEYLYERNIRVRYMHSE 615
            + L E+++  R +H +
Sbjct: 404 RKLLEEQHVATRIVHED 420



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 108/299 (36%), Gaps = 32/299 (10%)

Query: 525  TIVVSATPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             + +SATP    L+        + Q+  P  L   PV+          + + I     + 
Sbjct: 753  VLSLSATPIPRTLQMSLIGIRSLSQLETPP-LNRMPVQTYVIEKNFSMIKEIIQRELARN 811

Query: 583  LRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
             ++       +   ++   L E   ++ +   H ++   +  +++      ++ VLV   
Sbjct: 812  GQVFYLYNNVKEIYNVARKLREALPDVEIGVAHGQMSRDDIEDVMMQFTDNQYQVLVCTT 871

Query: 641  LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            ++  G+DIP    + I DAD  G  +    L Q  GR  R+          +     Q  
Sbjct: 872  IIETGIDIPNANTILIEDADHFGLSQ----LYQIKGRVGRSDRLAYAYLMYSP----QRQ 923

Query: 701  IDETTRRREKQLEHNKKHNINPQSVKEKIM-----EVIDPILLEDAATTNISIDAQQLSL 755
            + E   +R K ++   +     +     +      +++ P       T  I +  + L+ 
Sbjct: 924  LSEVAMKRLKSIKEFTQLGSGYKIAMRDLTIRGAGDMLGPQQAGFIDTVGIDMYIEMLNS 983

Query: 756  SKKKGKAHLKSLRK-QMHLA-----A------DNLNFEEAARIRDEIKRLKSSPYFQGL 802
            +  + K  +K + K  M  A     A       N ++E+   +   I+++++    + +
Sbjct: 984  AIME-KKGIKKVEKPVMKKANVKVDAYIPGQFANEDYEK-ITLYQRIEKIETKQELKAM 1040


>gi|260912528|ref|ZP_05919061.1| transcription-repair coupling factor [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260633351|gb|EEX51508.1| transcription-repair coupling factor [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 1134

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 111/331 (33%), Gaps = 38/331 (11%)

Query: 153 QPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           QP A A L K +     +   L G+  S      + + +   +  + +  +   A   Y 
Sbjct: 10  QPQA-AALDKTLADAAVRHIFLQGMVASAAPVFFSGMAQRHPQTTLFVLQDADEAGYFYQ 68

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +       N V +F S Y              Y +++++     + +R      L     
Sbjct: 69  DLVQLMGQNDVLFFPSSYRRAVK---------YGQRDAAN----EILRTEVLARLAAERP 115

Query: 272 CIVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             VV +   +  +  S +   +  ++L +G +++  +++ +L    ++  D     G F 
Sbjct: 116 TYVVCAPDALSELVVSKQRLDERTLRLSVGQTIDAVQMVKTLRSFDFREVDYVYEPGQFA 175

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V G  ++I+ S+  ++ +R+  FG++I+ I  F           E ++I           
Sbjct: 176 VRGSIVDIY-SYSHELPFRIDFFGDEIDTIRTFDVENQLSKDKREAVEIVPELARQDNEK 234

Query: 391 TLN-------------------TAMKYIKEE--LKMRLIELEKEGRLLEAQRLEQRITYD 429
                                   ++ I +E      L         +E Q++   +  +
Sbjct: 235 VSFLTLLPPDALLVMKDFGYVRDTIERIYDEGFAHQALEAQLDGATEVEQQQIRTAMQKE 294

Query: 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
           L++L           +     G  P +   T
Sbjct: 295 LQLLTANQFAHDAAAFRHVYIGSKPADEVQT 325



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     ++R       P+    A      + + IN    +  
Sbjct: 718 TLTMSATPIPRTLQFSLMGARDMSVMRTPPPNRHPIHTEIATFDGAFIAEAINFEMSRNG 777

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++           +L   + +     R +  H ++K  +    + D    ++DVL+  ++
Sbjct: 778 QVYFVNDRISNLPELANIIRKHVPDCRVVIAHGQMKPEDLENALIDFMNHEYDVLLSTSI 837

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I  A K G     + L Q  GR  R+ N K   Y      S   A+
Sbjct: 838 IENGIDISNANTIIINHAHKVGL----SDLHQMRGRVGRS-NRKAFCYLLAPPLS---AL 889

Query: 702 DETTRRREKQLE 713
               RRR + LE
Sbjct: 890 TPDARRRMEALE 901


>gi|319408599|emb|CBI82254.1| transcription repair coupling factor [Bartonella schoenbuchensis
           R1]
          Length = 1166

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 87/507 (17%), Positives = 164/507 (32%), Gaps = 66/507 (13%)

Query: 172 LLLGVTGSGKTFTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
           +L G+    ++F +A++   +   +P + +  +    + +        P+  V  F    
Sbjct: 18  ILDGIIDGFESFALAQLSSEIAQDKPLVYIVRDGTKISHVQQVLNFIEPNLPVLQF---- 73

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-----RNDCIVVSSVSCIYGI 284
                    P  D       S    I   R S    +       R+  I+ ++ + I  +
Sbjct: 74  ---------PAWDCLPYDRVSPGIAITARRLSTLAHISHLHKNPRSAIILTTANAIIQKL 124

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
                    I+  KIG  V    L+  L +  ++R  I    G F V G  I+IF S  +
Sbjct: 125 PPRAIIDDQIIHTKIGQCVNMDNLIHYLERSGFERVAIVHDVGEFAVRGGIIDIF-SPND 183

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
               R+  FG+ +E I  F P+T +   N     +   S  +     +N           
Sbjct: 184 SEPLRLDFFGDTLETIRVFDPITQRTTGNKTEFFLQPMSEVILTPERINLF--------- 234

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                   +   +    + QR     E +        +E++          E     F+Y
Sbjct: 235 --------KNNYIRTLSVSQRNDMLYEAISQGRRFAGMEHWLPLFY-----ENLDNFFDY 281

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
              D  +  +  H+    ++  YR          E      S     P+       L P 
Sbjct: 282 CG-DVPIVFE--HLIEEVLTERYRLIEDFYNVRKEQENNEESNASYHPIEPNLLY-LTPE 337

Query: 525 TIVVSATPGSWELEQCQGIIVE---QIIRPTGL---VDPPVEIRSARTQVE-DVYDEINL 577
            ++  A      ++     + +   Q +  T +    D   E  +    V  +V D I  
Sbjct: 338 QVLTRAQQSGQRIDFIPFNVPQTSGQTVIHTNVAPGYDFVKERNAQEKNVFANVVDYILS 397

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD-VL 636
               G ++LL   ++     L + L E           +K +E  + ++ ++    D V 
Sbjct: 398 LQSSGKKVLLACWSEGSMNRLLQILDEYG---------LKKIEIAKSLQAVKATSHDQVS 448

Query: 637 VGINLLREGLDIPECGLVAILDADKEG 663
             I  +  G +I +   V I + D  G
Sbjct: 449 AAIIAIEHGFEIDD--FVIIAEQDILG 473



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 68/192 (35%), Gaps = 15/192 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             + +SATP    L      + E       P G +     I      V  + + +     
Sbjct: 768 HVLTLSATPIPRTLGLALSGLRELSLIATPPIGRIPVRTFISPFDAVV--IREVLLREYY 825

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G +             + EYL      +++   H ++   +  +I+      ++DVL+ 
Sbjct: 826 RGGQSFYVCPRISDLPYVEEYLKTHVPELKFAVAHGQMPVTQFDDIMNAFYDRQYDVLLS 885

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  GLDIP    + +  AD  G     +SL Q  GR  R+      L+    T    
Sbjct: 886 TTIIESGLDIPTANTLIVHRADMFGL----SSLYQLRGRVGRSKQRAYALF----TFPAG 937

Query: 699 LAIDETTRRREK 710
             +  T  RR K
Sbjct: 938 KVLTPTADRRFK 949


>gi|327188302|gb|EGE55521.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
           CNPAF512]
          Length = 1167

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 80/505 (15%), Positives = 149/505 (29%), Gaps = 94/505 (18%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
               P   +  +    A L        P   V               +P  D       S
Sbjct: 36  RTGEPVAYVMSDGHRMADLEQMLGFVAPDVPVLT-------------LPAWDCLPYDRVS 82

Query: 251 INEQIDRMRHSATRSLLERND-----CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
            +      R +A   L+          ++V++ + +  +   +    +    + G+ +  
Sbjct: 83  PSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQKVAPQDVIESLSFSARPGNPLRM 142

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
            +L   L +  + R       G + V G  +++F    E+   R+  FG+ +E I  F P
Sbjct: 143 DDLAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGSEE-PVRLDFFGDTLESIRSFDP 201

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
            + +    V ++ +   S       T++            R   L   G       L   
Sbjct: 202 ASQRTTGQVRSLDLNPMSEVTLTPDTISRF----------RKNYLSAFGATTRDDALYLA 251

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
           ++              +E++          E   T+F+Y+     +  D         + 
Sbjct: 252 VS-------EGRRYPGMEHWLPLFY-----EKLDTVFDYL-SGFRVVTD--------HTV 290

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC----- 540
               +   K  L  +  RL S    +         +   T     TPG   L+       
Sbjct: 291 REAAEERSKLVLDYFDARLNSGQRAK-------GQMAQGTPYKPVTPGQLYLDSKLFAKT 343

Query: 541 ----QGIIVEQIIRPTGLVDPPVEIRSARTQ------------------VEDVYDEINLA 578
                 I V       G     V I + + Q                   + V   I   
Sbjct: 344 LDALGAIRVSPFNEIEGEARRVVNIEARQGQRWARSNAEGGGDAERVNIFDVVVKHIADR 403

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
              G ++L+T  T+   E L + L E  +       +VK +E ++ +  L  G+    V 
Sbjct: 404 RAGGAKVLVTAWTEGSLERLLQVLNEHGLE------KVKPVEALKDLATLAKGEAAAAVL 457

Query: 639 INLLREGLDIPECGLVAILDADKEG 663
              L  G +  +  LV I + D  G
Sbjct: 458 N--LESGFEAGD--LVVIGEQDILG 478



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 102/280 (36%), Gaps = 46/280 (16%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 773  HVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMA-VRTFISPFDSLVIRETLMREHYR 831

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +            D+  +L      ++V   H ++   E  +I+     G++DVL+  
Sbjct: 832  GGQSFYVCPRLADLADVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLST 891

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLD+P    + +  AD  G  +    L Q  GR  R+      L+   + K    
Sbjct: 892  TIVESGLDVPTANTLIVHRADMFGLAQ----LYQLRGRVGRSKVRAFALFTLPVNK---- 943

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             +  T  RR K                  +++ +D +       ++        +L  ++
Sbjct: 944  VLTATADRRLK------------------VLQSLDTLGAGFQLASHDLDIRGAGNLLGEE 985

Query: 760  GKAHLK----SLRKQMHLAADNLNFEEA-ARIR--DEIKR 792
               H+K     L +QM         EEA A ++  DEI  
Sbjct: 986  QSGHIKEVGFELYQQML--------EEAVAEVKGVDEIHD 1017


>gi|34541397|ref|NP_905876.1| transcription-repair coupling factor [Porphyromonas gingivalis W83]
 gi|34397714|gb|AAQ66775.1| transcription-repair coupling factor [Porphyromonas gingivalis W83]
          Length = 1122

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 95/228 (41%), Gaps = 18/228 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +  L+K +  REK   L G+ GS     + K++    RP + +A +   A  L+S+ +  
Sbjct: 20  VQALMKAL-DREKCVALDGLCGSSAALIV-KLLHESGRPVLCIASDMEEAGYLFSDLEQL 77

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL-LERNDCIVV 275
               +  +F S Y                 K    +     +R  A  +L +E +  +VV
Sbjct: 78  GGEGSALFFPSSYKRAI-------------KYGHTDAAQQVLRAEALAALSMEGSCPLVV 124

Query: 276 SSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           S    +   + + +   + +  ++ GD +++  L   L++  ++R D     G F V G 
Sbjct: 125 SYPEAVAERVVAGDILEKEMHSIRQGDRLDRDFLRDLLLEWGFERTDYVYEPGQFAVRGS 184

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
            +++F S   ++  R+  F ++IE I  F   +   +  +  + +  +
Sbjct: 185 LLDVF-SFSRELPVRIDFFDDEIESIRLFEVESQLSVGTLSEVVLMPD 231



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 11/193 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G      I        PV    AR   + V + +N    +  
Sbjct: 706 TLTMSATPIPRTLQFSLMGARDLSNINTPPPNRYPVATELARFSPDIVREAVNFEMSRNG 765

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++ +        E++   +     + RV   H  +   E   +I D    ++DVLV   +
Sbjct: 766 QVFIVHNRIDNIEEIAGIVQREVPDARVAVGHGRMSPTELERLILDFVHYEYDVLVATTI 825

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I DA + G       L Q  GR  R+ N K   Y  +   S+   +
Sbjct: 826 IENGIDVPNANTIIIDDAHRYGLSE----LHQLRGRVGRS-NRKAFCYLLSPPLSV---L 877

Query: 702 DETTRRREKQLEH 714
            + +RRR + +E+
Sbjct: 878 SDDSRRRLQAIEN 890


>gi|326798757|ref|YP_004316576.1| transcription-repair coupling factor [Sphingobacterium sp. 21]
 gi|326549521|gb|ADZ77906.1| transcription-repair coupling factor [Sphingobacterium sp. 21]
          Length = 1112

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 86/242 (35%), Gaps = 12/242 (4%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
            K +   +    L G+ GS    T     +  +RP I + P+   AA   S+ +      
Sbjct: 20  TKALQGAKPRIQLKGMIGSADAITAVSSYQLQERPFIFVLPDYEEAAFFLSDLEGLL-DK 78

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
            V +F S Y                 +  S +        S      E    IV    + 
Sbjct: 79  QVLFFPSSYRKPFD----------FTQADSAHVLQRAETLSTLNHTSELPKMIVTYPEAL 128

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
              + +    S+  +++ I   ++   +   L++  ++R D     G F + G  ++IF 
Sbjct: 129 AEKVINRTELSKNTLEISINAKLDIDFINEFLIEYDFERVDFVYEPGQFAIRGGIVDIF- 187

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
           S   D+ +R+  FGN +E I  F       +  + T+ I  N           + ++YI 
Sbjct: 188 SFSNDLPYRIEFFGNLVESIRTFDTENQLSVNKIHTVTIVPNVQAKFLTENNISLLEYID 247

Query: 401 EE 402
            +
Sbjct: 248 SD 249



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 12/170 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L     G     II   P        E+     ++  + + +     +
Sbjct: 710 TLTLTATPIPRTLHFSLMGARDLSIISTPPPNRQPVQTELHVFNEKL--IQEAVAYEINR 767

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++       +    L   + +     R    H +++     +++      +FDVLV  
Sbjct: 768 GGQVFFIHNRVQDLRQLGALITKLVPNARCGVAHGQLEGDALEDVMLKFINHEFDVLVAT 827

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            ++  GLDIP    + I  A   G     + L Q  GR  R+ N K   Y
Sbjct: 828 TIIEAGLDIPNANTIIINHAHMFGL----SDLHQMRGRVGRS-NKKAFCY 872


>gi|254293942|ref|YP_003059965.1| transcription-repair coupling factor [Hirschia baltica ATCC 49814]
 gi|254042473|gb|ACT59268.1| transcription-repair coupling factor [Hirschia baltica ATCC 49814]
          Length = 1152

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 89/496 (17%), Positives = 150/496 (30%), Gaps = 62/496 (12%)

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
           + I   +   + +A ++  A Q+ S  K F PH A+  F             P  D    
Sbjct: 30  EAINKRKGVGVYVARDERQALQVLSIAKFFQPHMAMINF-------------PAWDCLPY 76

Query: 247 KESSINEQIDRMRHSATRSLLERND---CIVVSSVSCI-YGIGSVESYSQMIVQLKIGDS 302
              S    I  MR SA   L  R+     +VV++   +   +  V   ++      IG  
Sbjct: 77  DRVSPTAHISAMRCSALARLSHRDPKEKILVVTTAHALVQRVAPVTKMAEASFAAGIGAD 136

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
           V+Q+ L   L    Y R DI    G + + G  ++I+P    +   R+  FG+++E I  
Sbjct: 137 VDQQALQDYLTINGYTRTDIVREPGEYAIRGGIVDIYPPDRIE-PVRLDFFGDNLESIRS 195

Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
           F   + +   +++ I     S        L             R   LE  G        
Sbjct: 196 FDAESQRSTNDLKEIAFAPVSEIFFTDEALTLF----------RRNYLESFGPPGG---- 241

Query: 423 EQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQ 482
                   E        Q I+ +          E   TL EY   D+LL  D    T+  
Sbjct: 242 ----DPSYEAARAKIRRQGIDQWLPLFH-----EKLETLLEYAGNDALLGFDNQAETVGL 292

Query: 483 ISGMYRGDFHRKATLAEYGFRLPS---CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
                  D+      A  G  + +     D   L  +E+   R +  VV   P       
Sbjct: 293 DRIAQAKDYFETRVHAAGGDVMDAKVLAPDKLYLSKDEFELTRSSGAVVRFHPSE----- 347

Query: 540 CQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
             G      +      D  VE         +              +++    +   A+ L
Sbjct: 348 NPGKKDVLFVGARAGKDFAVERSNPEANVFDAAVSLAKEHLANKRKVVFAAWSAGSADRL 407

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
              L +           +  +   E     +     V+V  ++   G       L  I +
Sbjct: 408 KTVLSDHG---------LPEVRSAEDWSAAKAANAPVIVETSM-ESGFTF--SDLAVIAE 455

Query: 659 ADKEGFLRSKTSLIQT 674
            D  G   ++    + 
Sbjct: 456 QDMLGDKLARPRKRKR 471



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 13/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     I +  I  T  +D    +R+   + + V   + +     +
Sbjct: 755 HVLTLSATPIPRTLQLALTGIRDLSIIATPPIDRL-SVRTYTVEFDPVTVREALLRERYR 813

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +             L  +L E+   V ++  H ++ + +  +I+ D   GK DVL+  
Sbjct: 814 GGQSYFIAPRVSDLPFLERFLREQVPEVSFLSAHGQMASGQLEDIMNDFYDGKADVLLAT 873

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + I  ADK G  +    L Q  GR  R+          T  K +  
Sbjct: 874 TIVESGLDIPRANTIVIHRADKFGLAQ----LYQLRGRVGRSKLRAYAYM--TTKKDM-- 925

Query: 700 AIDETTRRREK 710
            + ET  +R K
Sbjct: 926 VLSETAEKRLK 936



 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 5/153 (3%)

Query: 72  TASKGEFQSQSSISMSEKQTREISEQT-MTPSVQALARLIQSDNPLLKNGKIWTPHRSWS 130
                E  S+      E    ++      +   +A   +++    L++        ++  
Sbjct: 528 PVENIELISRYGADSGEGSMDKLGGAGWQSRKAKAKKNIMEMAGDLIRIAAEREMRKAEK 587

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MA 186
             +       F  +  Y  + DQ  AI   L  + S +   +L+ G  G GKT      A
Sbjct: 588 TADADGLFDEFCARFPYEETDDQLNAIEDCLSDLASGKPMDRLVCGDVGFGKTEVALRTA 647

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
            V         ++AP  +LA Q Y  FK  F  
Sbjct: 648 FVAAMSGMQVAIIAPTTLLARQHYRTFKERFEG 680


>gi|254511931|ref|ZP_05123998.1| transcription-repair coupling factor [Rhodobacteraceae bacterium
           KLH11]
 gi|221535642|gb|EEE38630.1| transcription-repair coupling factor [Rhodobacteraceae bacterium
           KLH11]
          Length = 1151

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 102/318 (32%), Gaps = 52/318 (16%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           + G       QL+L              +     P   +A +      + +    F P  
Sbjct: 9   VGGAPEGFDAQLVL------------NEVARSGGPVAHVARDDKRLEAMRAALAFFAPDM 56

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL---LERNDCIVVSS 277
            V  F             P  D       S N  I   R +   +L   +     ++ + 
Sbjct: 57  PVFVF-------------PGWDCLPYDRVSPNADISAARVATLAALVHQMPDRFVLLTTL 103

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            +    + + E          +   +++  L + LV+  + +    +  G + + G  I+
Sbjct: 104 NAATQRVPAREVLRAAAFTACVEHRIDEDALRNFLVRMGFTQSPTVMEPGDYAIRGGIID 163

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           IFP   E    R+ +FG+ ++    F P++ +    ++ +++   S  +     +    +
Sbjct: 164 IFPP-GESGPVRLDLFGDVLDGARRFDPVSQRTTEKLDVVELAPVSEVILDEAAITRFRQ 222

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
             + E           G                E +      Q IE++  +       E 
Sbjct: 223 NYRIE-------FGAAGTD----------DPLYEAVSAGRKHQGIEHWLPFFH-----EK 260

Query: 458 PPTLFEYIPEDSLLFVDE 475
             TLF+Y+P  + + +D+
Sbjct: 261 LETLFDYLP-GATISLDD 277



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 73/190 (38%), Gaps = 16/190 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  +D    IR+  ++ +   + + +     +
Sbjct: 746 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPIDRLA-IRTYVSEFDAVTIREALLREHYR 804

Query: 582 GLRILLTVLTKRM----AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +    V          E L E L E    V   H ++   E  + +     GK+DVL+
Sbjct: 805 GGQSFYVVPRVSDLPGIEEFLKEQLPELTYVVA--HGQMAAGELDDRMNAFYDGKYDVLL 862

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK   YA   TK  
Sbjct: 863 ATTIVESGLDIPTANTMVVHRADMFGLAQ----LYQIRGRVGR---SKTRAYAYLTTKPR 915

Query: 698 QLAIDETTRR 707
           Q       +R
Sbjct: 916 QKLTATAEKR 925



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 12/105 (11%)

Query: 117 LKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLG 175
           L+   I  P      +   +    F     Y  + DQ  AI+++++ +HS     +L+ G
Sbjct: 573 LRKAPIMDPP----PHAWDEFSARF----PYQETDDQLRAISEVMEDMHSGAPMDRLICG 624

Query: 176 VTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
             G GKT      A V         V+AP  +LA Q  + F+  F
Sbjct: 625 DVGFGKTEVAMRAAFVAAMSGVQVAVVAPTTLLARQHAASFRERF 669


>gi|209549326|ref|YP_002281243.1| transcription-repair coupling factor [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535082|gb|ACI55017.1| transcription-repair coupling factor [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 1167

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 78/501 (15%), Positives = 151/501 (30%), Gaps = 86/501 (17%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
               P   +  +    A L        P   V    ++ D    +   P  DT   + ++
Sbjct: 36  RAGEPVAYVISDGHRMADLEQMLGFVAPDIPVLTLPAW-DCLPYDRVSPSADTSARRLAA 94

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +   I   R             ++V++ + +  +   +    +    + G+ +   +L  
Sbjct: 95  LGGLIAHRRKP-------HAAIVLVTANAMLQKVAPQDVIESLSFSARPGNQLRMDDLAG 147

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            L +  + R       G + V G  +++F    E+   R+  FG+ +E I  F P + + 
Sbjct: 148 RLERNGFDRVATVREVGEYAVRGGILDVFVPGSEE-PVRLDFFGDTLESIRSFDPASQRT 206

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
              V ++ +   S       T++            R   L   G       L   ++   
Sbjct: 207 TGQVRSLDLNPMSEVTLTPDTISRF----------RKNYLSAFGATTRDDALYLAVS--- 253

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
                      +E++          E   T+F+Y+     +  D +         +    
Sbjct: 254 ----EGRRYPGMEHWLPLFY-----EKLDTVFDYL-SGFRIVTDNT---------VREAA 294

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT-TIVVSATPGSWELEQC--------- 540
             R   + +Y        D R    +         T     TPG   L+           
Sbjct: 295 EERSKLVFDY-------CDARLHSGQPAKGQMAQGTPYKPVTPGQLYLDSKLFAKTLDAL 347

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQ------------------VEDVYDEINLAAQQG 582
             I +       G     V I + + Q                   + V   I      G
Sbjct: 348 GAIRISPFNEIEGEARRVVNIEARQGQRWARSNAEGGGDAERINIFDVVVKHIADRRAAG 407

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            ++L+T  T+   E L + L E  +       +VK +E ++ +  L  G+    V    L
Sbjct: 408 AKVLVTAWTEGSLERLLQVLNEHGLE------KVKPIEALKDLGSLAKGEAAAAVLN--L 459

Query: 643 REGLDIPECGLVAILDADKEG 663
             G +  +  LV I + D  G
Sbjct: 460 ESGFEAGD--LVVIGEQDILG 478



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 102/280 (36%), Gaps = 46/280 (16%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 773  HVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMA-VRTFISPFDSLVIRETLMREHYR 831

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +            D+  +L      ++V   H ++   E  +I+     G++DVL+  
Sbjct: 832  GGQSFYVCPRLADLADVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLST 891

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLD+P    + +  AD  G  +    L Q  GR  R+      L+   + K    
Sbjct: 892  TIVESGLDVPTANTLIVHRADMFGLAQ----LYQLRGRVGRSKVRAFALFTLPVNK---- 943

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             +  T  RR K                  +++ +D +       ++        +L  ++
Sbjct: 944  VLTATADRRLK------------------VLQSLDTLGAGFQLASHDLDIRGAGNLLGEE 985

Query: 760  GKAHLK----SLRKQMHLAADNLNFEEA-ARIR--DEIKR 792
               H+K     L +QM         EEA A ++  DEI  
Sbjct: 986  QSGHIKEVGFELYQQML--------EEAVAEVKGVDEIHD 1017


>gi|283768627|ref|ZP_06341539.1| transcription-repair coupling factor [Bulleidia extructa W1219]
 gi|283105019|gb|EFC06391.1| transcription-repair coupling factor [Bulleidia extructa W1219]
          Length = 1142

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 75/457 (16%), Positives = 158/457 (34%), Gaps = 65/457 (14%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            + L+ I  ++    +   +   +   MA   +   RP IV+  N  LA Q Y    +F 
Sbjct: 15  NKALEQIQKKKSPIAIS--STIQEALLMALSYQQKPRPMIVLKSNLYLAQQFYERLTSFL 72

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
                  F +              ++   +  + + ++   +     SL +  + IVV+ 
Sbjct: 73  SEKECSLFGTD-------------ESLRVEAIASSPELSAQQVDTLFSLQKHPNQIVVTC 119

Query: 278 VSC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
            S  +  +     + +  + LKI +    K L   L+   Y +Q       +F + G  +
Sbjct: 120 PSAYLRFLPLPSQFKEASIHLKINEEWSIKVLKEKLLASGYHQQAHVDQPLSFAIRGGIV 179

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +++  +  D   R+  F   IE I  F     + I  +E ++I   S        +    
Sbjct: 180 DVYSINY-DHPIRLEFFDTQIESIRFFDENIQRTIGTIEEVEIVPASIVFFSFNQIGDIR 238

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
           K I+++L+       ++  +   Q            +E     +S+  Y  ++       
Sbjct: 239 KGIQQDLERNPNVFLQDELMTTIQ-----------AMEAHLFDKSMYPYYAFVPNMAG-- 285

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
               L++Y+ ED+ LF+ +  +    I  +          +A+    LP     R   + 
Sbjct: 286 ----LWDYM-EDAELFISDEILVNDAIKRLKEDTISYIQEMAQENKLLP-----RFDLWH 335

Query: 517 EWNCLRPTT-IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           +     P +      + G           +E++  P  L++  ++I              
Sbjct: 336 DLERSMPASRCYYGDSYGD------PVSHIEEVYLPNELLEKRIQI-------------- 375

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
                Q  R+ + VL K+  + + E L    I  R++
Sbjct: 376 ----AQKQRVTVFVLNKKEIQRIREILDHEKIEYRFL 408



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 66/190 (34%), Gaps = 17/190 (8%)

Query: 525 TIVVSATPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
            + +SATP    L+        + Q+  P  L    V+          + D I     + 
Sbjct: 745 VLALSATPIPRTLQMSLIGVRSLSQLETPP-LNRYSVQTYVVEKNQALIVDAIQKELSRK 803

Query: 583 LRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++           +    L + L +  I V  +H ++   E  +I+      + D+LV 
Sbjct: 804 GQVFYLYNNIEFIYNRARTLQKELPDARIGV--VHGKLGRDEIEDIMWRFNHQEIDILVT 861

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DIP    + I DA   G  +      Q  GR  R+           +    +
Sbjct: 862 TTIIENGIDIPNVNTILIEDAQNFGLSQIY----QMKGRVGRSNRLAYAY----LLIPNR 913

Query: 699 LAIDETTRRR 708
             + E  ++R
Sbjct: 914 KQLSEVAQKR 923


>gi|225011211|ref|ZP_03701670.1| transcription factor CarD [Flavobacteria bacterium MS024-3C]
 gi|225004625|gb|EEG42588.1| transcription factor CarD [Flavobacteria bacterium MS024-3C]
          Length = 681

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 125/351 (35%), Gaps = 34/351 (9%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G+ GS  +F +  +    + P +++  +K  AA + ++ ++F   + V ++ + Y   
Sbjct: 25  LNGLAGSALSFAITALFNESKVPFVLILEDKETAAYVLNDLESFIGEDRVLFYPASYKK- 83

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL--LERNDCIVVSSVSCIYGIGSVESY 290
                         + S  +     +R    +      +  CIV    +    +   ++ 
Sbjct: 84  ------------PYQHSQTDNANILLRAEVLQRFGKKGKPLCIVSYPEAIFEKVIQKKTL 131

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            +  + LK G+ +    L  SL +  +KR D     G F V G  +++F S+  D  +R+
Sbjct: 132 EKNTLNLKQGELISLDFLNESLFEYGFKRVDFVSSPGEFSVRGGIVDVF-SYAYDHPYRI 190

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
             FG ++E I  F  ++ + I   E I I  N                    L  R    
Sbjct: 191 EFFGEEVESIRTFDIVSQRSIAKQEEISIIPNVTQTDT--------------LTKRQDFF 236

Query: 411 E-KEGRLLEAQRLEQRITYDLEML--ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
              + +     R    +   +E L  E      ++E     +   N       LF  + +
Sbjct: 237 SFTDKKTTVLIRKPGVLKQKIESLYKEAVLKFDTLEGEIAQIPPENLYVQSKELFGALEK 296

Query: 468 DSLLFVDESHVTIPQISGMYRGDFHRKATLAEY-GFRLPSCMDNRPLRFEE 517
              +F++     I Q+    + D      L ++ G   P+     PL  E 
Sbjct: 297 HQCVFLESQPAEIAQLGIQKQQDSAENNILIDFKGTDQPAFNKKFPLIIER 347


>gi|83952089|ref|ZP_00960821.1| transcription-repair coupling factor [Roseovarius nubinhibens ISM]
 gi|83837095|gb|EAP76392.1| transcription-repair coupling factor [Roseovarius nubinhibens ISM]
          Length = 1153

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 106/308 (34%), Gaps = 39/308 (12%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
            + G         + +  +    P I +A +      + +  + F P   V  F      
Sbjct: 8   TVGGAPEGFDARLILQESDKSGGPVIHVARDDKRMVAMQAALRFFAPDLPVITF------ 61

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL---LERNDCIVVSSVSCIYGIGSVE 288
                  P  D       S N  I   R +   +L   +     ++ +  +    + + E
Sbjct: 62  -------PGWDCLPYDRVSPNADISATRMATLAALAHGMSGRFVLLTTLNAATQKLPARE 114

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                    ++G+ ++++ L + LV+  + +       G + + G  I+I+ S  +    
Sbjct: 115 VLQSAAFAAQVGERIDEEALRAFLVRMGFTQAPTVTEPGDYAIRGGIIDIY-SPGDAGPV 173

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+ +FG+ ++ +  F P T + +  ++ I++   S  +     +    +  + E      
Sbjct: 174 RLDLFGDVLDGVRRFDPATQRTVAKLDQIELAPVSEVILDEAAITRFRQNYRIE------ 227

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
                G                E +      Q IE++  +   R       TLF+Y+P  
Sbjct: 228 -FGAAGTD----------DPLYEAVSAGRKHQGIEHWLPFFHARLE-----TLFDYLPGA 271

Query: 469 SLLFVDES 476
           S+   D+S
Sbjct: 272 SVTLDDQS 279



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 9/162 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + +  I  T  VD    IR+  ++ + V   + +     +
Sbjct: 746 HVLTLSATPIPRTLQLSLSGVRDLSIIGTPPVDRL-SIRTYVSEFDRVTVREALLREHYR 804

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ E+L      V +   H ++   E    +     GK+DVL+  
Sbjct: 805 GGQSFYVVPRVSDLPEIEEFLRNEVPEVTFAVAHGQMAAGELDARMNAFYDGKYDVLLAT 864

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+
Sbjct: 865 TIVESGLDIPRANTMIVHRADMFGLAQ----LYQIRGRVGRS 902



 Score = 38.5 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            Y  + DQ  AI+ +++ + S     +L+ G  G GKT      A V     +   V+AP
Sbjct: 594 PYQETDDQLGAISDVMEDLGSGRPMDRLICGDVGFGKTEVAMRAAFVAAMSGQQVAVIAP 653

Query: 202 NKILAAQLYSEFKNFFPHNAV 222
             +LA Q Y  F   F    V
Sbjct: 654 TTLLARQHYQSFAERFRGFPV 674


>gi|227487825|ref|ZP_03918141.1| transcription-repair coupling factor [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092152|gb|EEI27464.1| transcription-repair coupling factor [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 1218

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 80/462 (17%), Positives = 162/462 (35%), Gaps = 58/462 (12%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           AIA  +K +                + + +  +   +  P +V+  +   A  L +E   
Sbjct: 16  AIAGAVKNLGEETLHIT---APDEVRPWLVGALSAHV--PLLVVTASGREAEDLTAELTA 70

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
                 V Y+ S+ +    E   P  D  I +++ +   +D +            D +V 
Sbjct: 71  MMGD-KVMYYPSW-ETLPHERLSPGVDI-IGQQAKVLHHLDSL------------DVVVT 115

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           ++      + + E   +  V + +G+    +EL+ SLV + Y R D+   RG F V G  
Sbjct: 116 AARGLAQPLVN-EVTGRDPVTVTVGEDYPFEELIDSLVFRSYSRVDLVAARGEFAVRGGI 174

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI--RNVETIKIYANSHYVTPRPTLN 393
           I+IFP    +   RV  +G+++ EI+ F     +      ++ +++Y             
Sbjct: 175 IDIFP-TTANNPVRVEFWGDEVTEITTFAVADQRTYSDGQLKKVELYPARALP------- 226

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                I +E+K R   L +           Q +   L  +    S   +E     LT   
Sbjct: 227 -----ITDEIKKRAEALARTYGG------NQALAQILGKVAEGISADGMETLIPVLT--- 272

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC-----M 508
              P  T+ + +PE + + + +      ++  +   D        E G+ L +      +
Sbjct: 273 -DSPLVTIVDKLPEGAHVLLVDPERIRTRVGDLKATDTE----FLEAGWELAAMGGDGPV 327

Query: 509 DNRPLRFEEWNCLRPTTIVVSA---TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565
           D++ L  E  +     ++ V+A       W L     +  +            V  R   
Sbjct: 328 DHKDLDLEPSSYRSLESLEVTAREHEIPLWTLTPPGMMASDDAETLPLSFGDLVRPRGDE 387

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
            ++  + +++      G   +     K       + L+ER I
Sbjct: 388 KKISQLMEQLLAHTLAGGAAVYISPQKANCARFGDKLHERGI 429



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     T ++ PP + R   T V   ED      +  + 
Sbjct: 784 VLTMSATPIPRTLEMSMSGIREM----TTILTPPQDRRPVLTYVGAQEDKQVAAAIRREL 839

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++       +  E+    L E     R    H ++   +  + ++     +FDVLV
Sbjct: 840 LRDGQVFYVHNRVKSIEERARQLRELVPEARIVVAHGQMSEEQLEKTVQGFWDREFDVLV 899

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + + +A   G  +    L Q  GR  R+       +        
Sbjct: 900 CTTIVETGLDIANANTLIVENAHHMGLSQ----LHQLRGRVGRSRERAYAYFLYPKG--- 952

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET+  R   +  N    
Sbjct: 953 -QVLTETSYERLTTIAQNNDMG 973


>gi|294786766|ref|ZP_06752020.1| transcription-repair coupling factor [Parascardovia denticolens
           F0305]
 gi|315226389|ref|ZP_07868177.1| transcription-repair coupling factor [Parascardovia denticolens DSM
           10105]
 gi|294485599|gb|EFG33233.1| transcription-repair coupling factor [Parascardovia denticolens
           F0305]
 gi|315120521|gb|EFT83653.1| transcription-repair coupling factor [Parascardovia denticolens DSM
           10105]
          Length = 1206

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/338 (18%), Positives = 119/338 (35%), Gaps = 50/338 (14%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           + + P   +  A A L+       +   L+G     +    A   E   RP +++ P+  
Sbjct: 29  SSFLPGLREDPAFADLVND----GRGVSLVGAPLGIRPALAAATGE--GRPVVMVVPSGR 82

Query: 205 LAAQLYSEFKNFFPHN--AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
            A  +    ++++  N   V+   ++ +    E   PR DT  ++ S  +    R+ H  
Sbjct: 83  DAEDMVGSIRSWYRGNPADVDMIPAW-ETLPHERLSPRADTVAQRMSVFH----RLAHPV 137

Query: 263 TRSLLERNDCIVVSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
             S L     IVV  V  +      GI  +E         ++G  ++  +    LV+  Y
Sbjct: 138 EGSDLFGPLKIVVVPVRSLIQPVVRGIQDMEPVV-----FQVGQEMDLSQAADRLVENAY 192

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VET 376
              D+ + RG F + G  ++IFP        R+  FG++I+ I  F+    +      E 
Sbjct: 193 TCADLVMDRGEFALRGGILDIFPP-TAPHPVRIDFFGDEIDSIKPFHASDQRSFGQGQER 251

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           I   A       +     A       L   +   +                  LE +   
Sbjct: 252 IWAPACREIPLNQKVRRRA-----AALVGSIPNADDM----------------LESISQG 290

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
              + +E+    L   +   P  +LF+  P   ++F D
Sbjct: 291 IPVEGMESLIPAL--IDDVMPVYSLFD--PRAVIMFCD 324



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 68/203 (33%), Gaps = 21/203 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV---EDVYDEINLAAQ 580
            + +SATP    LE          IR    +D P E R    T V   ED      +  +
Sbjct: 808 VLSLSATPIPRTLEMAVTG-----IREMSTLDTPPEDRLPVLTYVGAYEDTQVVAAIRRE 862

Query: 581 --QGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVL 636
             +G ++       +    +  ++ +     +    H ++   +   II D      DVL
Sbjct: 863 LLRGGQVFFVHNRVQDISKVAAHIKDLVPEAKIGMAHGKMGEKQLDNIIHDFWHRDIDVL 922

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  GLDI     + +  AD+ G  +    L Q  GR  R        +     K 
Sbjct: 923 VCTTIVETGLDISNANTLIVDRADRFGLSQ----LHQLRGRVGRGWERAYAYFLYDPAKP 978

Query: 697 IQLAIDETTRRREKQLEHNKKHN 719
           +     +T   R   +  N    
Sbjct: 979 M----TQTAHDRLSTIAQNTALG 997


>gi|326334855|ref|ZP_08201056.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692892|gb|EGD34830.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 1108

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 92/238 (38%), Gaps = 17/238 (7%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            QL + I  +    +  G+ GS  +F ++++ +  ++    +  +K  AA L ++ +   
Sbjct: 17  KQLSQHIKGKIPCYM-EGIVGSAISFVLSEIFKQTKQTLFFVGDDKEQAAYLLNDLELLL 75

Query: 218 PHNAVEYFVSYYD-YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
             + V +F S Y   YQ E                +     +R      + +    +V  
Sbjct: 76  GQDQVLFFPSSYRRPYQTEE--------------TDNANVLLRAEVLSHIQKEAKVVVSY 121

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           S +    + + +   +  + LK+G+ +    L   L + Q+ R D     G F V G  +
Sbjct: 122 SEALFEKVLTRQQLEKNTLTLKVGEQLSLDTLNEVLFEYQFNRVDFVSEPGEFSVRGGIV 181

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
           ++F S   D  +R+  F + IE I  F   T   I+ V ++ I  N           +
Sbjct: 182 DVF-SFSNDTPYRIEFFSDVIESIRSFDVETQLSIQQVPSVVIIPNIENKLAGEQRTS 238



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 75/192 (39%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+       +  +I        P+E +      E + D I+   Q+G 
Sbjct: 703 VLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIESQVITFSEEAIRDAISYELQRGG 762

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   +       R    H +++     E++     G +D+LV   +
Sbjct: 763 QVFFIHNRVENIKEVAGMIQRLVPDARIGIGHGQMEGKALEEVMLAFINGDYDILVATTI 822

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+P    + I +A   G     + L Q  GR  R+ N K   Y  T   S    +
Sbjct: 823 IESGLDVPNANTIFIHNAQHFGL----SDLHQMRGRVGRS-NKKAFCYFITPNLS---EL 874

Query: 702 DETTRRREKQLE 713
            E +R+R + + 
Sbjct: 875 PEDSRKRIQAIA 886


>gi|255529938|ref|YP_003090310.1| transcription-repair coupling factor [Pedobacter heparinus DSM
           2366]
 gi|255342922|gb|ACU02248.1| transcription-repair coupling factor [Pedobacter heparinus DSM
           2366]
          Length = 1113

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 98/261 (37%), Gaps = 17/261 (6%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           + + Y         I  L K +++ +  +L L G+ GS        +   + +P + + P
Sbjct: 6   LISRYK----TDERIVALAKALNAGKGTKLQLKGLVGSADATIAVAIYFLLHKPQLFVLP 61

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           ++  AA   ++ ++      V  F S +        V  T   + +   +NE        
Sbjct: 62  DREEAAYFLADLESIL-DKEVLLFPSSFRKAFDFTQV-DTANVLARAEVLNE-------- 111

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
                 E    +V    +    +       +  +++ +   +    +   L+   + R D
Sbjct: 112 -LNHQSEYGKIVVSYPEALAEKVIDRTVLEKNTLEISLNAKLGIDFINEFLIDYDFNRTD 170

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
                G F + G  ++IF S   D+ +R+  FG+ +E I  F   +   + +V+T+ I  
Sbjct: 171 FVYEPGQFSIRGGIVDIF-SFSHDLPYRIEFFGDIVESIRTFEIESQLSVEDVKTLTIIP 229

Query: 382 NSHYVTPRPTLNTAMKYIKEE 402
           N        T  + + YI+++
Sbjct: 230 NVQSKYLTETNISILDYIEKD 250



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 12/170 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L        +  I    P        E+     ++  + + +     +
Sbjct: 711 TLTLTATPIPRTLHFSLMGARDLSIMSTPPPNRQAVNTELHVFNDKL--IQEAVQFELDR 768

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++            L   +     + R    H ++   +  +++ D   G+ DVLV  
Sbjct: 769 GGQVFFIHNRVHDLPQLGGLIQTLVPKARIGIAHGQLDGDQLEDVMLDFINGEKDVLVAT 828

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            ++  GLDIP    + I  A   G     + L Q  GR  R+ N K   Y
Sbjct: 829 TIIEAGLDIPNANTIIINHAHMFGL----SDLHQMRGRVGRS-NKKAFCY 873


>gi|150007271|ref|YP_001302014.1| putative transcription-repair coupling factor [Parabacteroides
           distasonis ATCC 8503]
 gi|149935695|gb|ABR42392.1| putative transcription-repair coupling factor [Parabacteroides
           distasonis ATCC 8503]
          Length = 1120

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 90/232 (38%), Gaps = 18/232 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A+  LLK  +   +   L G+ GSG   T+A +    +   + +  ++  A   Y +
Sbjct: 15  QVTALDTLLK--NDTSRNIFLKGLNGSGPAMTIASLFTKGRGSYVCVLNDQEEAGYFYHD 72

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                  N V +F S Y                 K   ++   + +R      L + +  
Sbjct: 73  LMQLTASNEVYFFPSAYRRAI-------------KYGHVDPANEILRTEVLSRLQDPDAS 119

Query: 273 IVV--SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            V+     +    + + E   +  +++ +G+ ++   +   L +  +++ D     G + 
Sbjct: 120 FVIVTYPDALAERVVAREVLKENTLKISVGEKLDNMFVSDVLDEYGFEQVDYVYEPGQYA 179

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           + G  +++F S   +  +R+  FG+++E I  F   T      +++I I   
Sbjct: 180 LRGSILDVF-SFSYEFPYRIDFFGDEVETIRTFDVETQLSKEKLDSIYIVPE 230



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 76/201 (37%), Gaps = 17/201 (8%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+   R   + + + IN    +
Sbjct: 706 TLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEV--ERFNPDIIREAINFEMSR 763

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIR---VRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++       +   ++ E L  R +    V   H +++  +  +II D    ++DVL+ 
Sbjct: 764 NGQVFFINNRIQNIYEM-EALVRREVPDARVAVGHGQMEPEKLEKIILDFVNHEYDVLIA 822

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +++  G+D+P    + I +A + G     + L Q  GR  R+              S+ 
Sbjct: 823 TSIVESGIDVPNANTIIINNAQQFGL----SDLHQLRGRVGRSNRKAFCYLLSPPLTSLT 878

Query: 699 LAIDETTRRREKQLEHNKKHN 719
                  RRR + +E+  +  
Sbjct: 879 QE----ARRRLQAIENFSELG 895


>gi|38233507|ref|NP_939274.1| transcription-repair coupling factor [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38199767|emb|CAE49427.1| transcription-repair coupling factor [Corynebacterium diphtheriae]
          Length = 1264

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 111/664 (16%), Positives = 202/664 (30%), Gaps = 112/664 (16%)

Query: 153 QPAAIAQLLK---------GI--HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAP 201
           QP  +A LLK         G+  H  E    + G+    + + +A +      P +V+  
Sbjct: 10  QPPMLAGLLKVAATDPKIKGLLQHVGEPHLHITGI-DQARPWAIAALAHRA--PVLVVTA 66

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
               A  L +E +       V +F ++ +    E   P  D   ++   ++   D   +S
Sbjct: 67  TGREAEDLSAELRAMLGE-KVAWFPAW-ETLPHERLSPGADIAGQRARILSHIAD---YS 121

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
              +        +VS V+    +            L++      +E    LV + Y   D
Sbjct: 122 VVVTAARGFSQPIVSQVAGRDPLV-----------LEVDSECSLEEATQQLVFRAYHHVD 170

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI--RNVETIKI 379
           +   RG F   G  +++FP        RV  +G+++ EI  F     + I   +V  +++
Sbjct: 171 LVAKRGEFATRGGILDVFP-TTAQHPVRVEFWGDEVSEIRGFQVADQRAIPDSDVSRVEV 229

Query: 380 YANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC 439
           +              A      EL   +             ++   I  D          
Sbjct: 230 FPARELPITPEIAQRA-----AELA--VKFQGNPTLQELLAKISDSIPSD---------- 272

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV---DESHVTIPQISGMYRGDFHRKAT 496
             +E     L      +P  TL E +PE++ + V   ++    +  +             
Sbjct: 273 -GMEALIPAL----VDQPMVTLAELMPENTHIVVVGPEKIRTRVADLQATDAEFLAAGWE 327

Query: 497 LAEYGFRLPSCM---DNRPLRFEEWNCL----RPTTIV--VSATPGSWELEQCQGIIVEQ 547
            A  G   P      D     +  +  L    +  T+     A PG +E      + +E 
Sbjct: 328 AAAMGADGPVATRGLDLDASSYRSYESLENTAQKHTMPWWTFAPPGMFEASDGDTLPLEF 387

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
              PT   D          Q++ +   +    + G         +   + + E   E+ I
Sbjct: 388 EPGPTPRGDLE--------QIDQMMALLLAHTRDGGAAAFIAPAQGAIKRMVERFKEQGI 439

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG---------LVAILD 658
             +      +            LG+  V +   +   GL  P+           LV I  
Sbjct: 440 PTKVATPGWQPT----------LGE--VTLYQAMSHAGLVFPKVRKQPGKPALPLVVITK 487

Query: 659 --------ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT---KSIQLAI---DET 704
                    D  G  R        +   A      V+     I    K  +  I   DET
Sbjct: 488 TDLTGNRVGDIAGAKRRPAKRRHRVDPLALKTGDYVVHETHGIGRFLKMTERVIQSGDET 547

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVID--PILLEDAATTNISIDAQQLSLSKKKGKA 762
           +RR    LE+       P       M+ +D     +     T   +       +KKK +A
Sbjct: 548 SRREYIVLEYAASKRGQPADQLYVPMDSLDMLSKYVGGEKPTLSKMGGSDWKNTKKKARA 607

Query: 763 HLKS 766
            ++ 
Sbjct: 608 AVRE 611



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 70/204 (34%), Gaps = 23/204 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP +     T V   ED      +  + 
Sbjct: 799 VLTMSATPIPRTLEMSMAGIREM----STILTPPEDRHPILTYVGAQEDKQVAAAIRREL 854

Query: 581 -QGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +  ++          E    +L E + E  I V   H ++      + ++     ++DV
Sbjct: 855 LRDGQVFYVHNKVSDIEKKARELRELVPEARIVVA--HGQMSEELLEQTVQGFWDREYDV 912

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  GLDI     + + +A   G  +    L Q  GR  R+       +      
Sbjct: 913 LVCTTIVETGLDIANANTLIVENAHHMGLSQ----LHQLRGRVGRSRERGYAYFLYPKG- 967

Query: 696 SIQLAIDETTRRREKQLEHNKKHN 719
                + E +  R   +  N    
Sbjct: 968 ---ATLTENSYDRLATIAQNNDLG 988


>gi|255014104|ref|ZP_05286230.1| putative transcription-repair coupling factor [Bacteroides sp.
           2_1_7]
          Length = 1120

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 90/232 (38%), Gaps = 18/232 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A+  LLK  +   +   L G+ GSG   T+A +    +   + +  ++  A   Y +
Sbjct: 15  QVTALDTLLK--NDTSRNIFLKGLNGSGPAMTIASLFTKGRGSYVCVLNDQEEAGYFYHD 72

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                  N V +F S Y                 K   ++   + +R      L + +  
Sbjct: 73  LMQLTASNEVYFFPSAYRRAI-------------KYGHVDPANEILRTEVLSRLQDPDAS 119

Query: 273 IVV--SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            V+     +    + + E   +  +++ +G+ ++   +   L +  +++ D     G + 
Sbjct: 120 FVIVTYPDALAERVVAREVLKENTLKISVGEKLDNMFVSDVLDEYGFEQVDYVYEPGQYA 179

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           + G  +++F S   +  +R+  FG+++E I  F   T      +++I I   
Sbjct: 180 LRGSILDVF-SFSYEFPYRIDFFGDEVETIRTFDVETQLSKEKLDSIYIVPE 230



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 72/197 (36%), Gaps = 18/197 (9%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+   R   + + + IN    +
Sbjct: 706 TLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEV--ERFNPDIIREAINFEMSR 763

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIR---VRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++       +   ++ E L  R +    V   H +++  +  +II D    ++DVL+ 
Sbjct: 764 NGQVFFINNRIQNIYEM-ETLVRREVPDARVAVGHGQMEPEKLEKIILDFVNYEYDVLIA 822

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +++  G+D+P    + I +A + G     + L Q  GR  R+              S+ 
Sbjct: 823 TSIVESGIDVPNANTIIINNAQQFGL----SDLHQLRGRVGRSNRKAFCYLLSPPLTSLT 878

Query: 699 LAIDETTRRREKQLEHN 715
                   RR  Q   N
Sbjct: 879 Q-----EARRRLQAIEN 890


>gi|118602982|ref|YP_904197.1| transcription-repair coupling factor [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567921|gb|ABL02726.1| transcription-repair coupling factor [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 1142

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/440 (12%), Positives = 130/440 (29%), Gaps = 54/440 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     + +     Q+  +V+  +      LY     +  +  +  F S+       
Sbjct: 23  LYGSADALALIEFTNQQQQVILVITDDTGHFDNLYKSLNFYNTNLEILKFDSW------- 75

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
                 +       S +  I   R      L    + I+++++  ++  +  +E   +  
Sbjct: 76  ------EVLAYDHFSPHPDITSSRLKTLSKLKNLKNGIIITTLESLFSYLCPLEFSEKYS 129

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
             + I D++  K     L+K  Y R    +  G F + G  I+++P       +R+ +F 
Sbjct: 130 FNININDNINIKAFSKKLLKIGYNRVTTVMEHGEFNIHGSLIDLYPM-GAKTPYRIDLFD 188

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
            ++E I  F   T +    V  I +     + T   ++       +            +G
Sbjct: 189 QEVESIRTFDTSTQRSKMEVSKIMLLPAREFATDSTSIERFKVNYQ-------KAFNDDG 241

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                        +    +        IE Y              TLF+Y+ +++++   
Sbjct: 242 -------------FIYTEVSEGRLPSGIEFYLPLFFN-----TTNTLFDYLVDNAIIVT- 282

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
            S      +   Y     R     +   R P  +    L  E                  
Sbjct: 283 -SKGFSSLVDKTYSEIHERFENAKKSLDRAPLDIHKVFLSKELLFREIKQK-------SQ 334

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ--GLRILLTVLTK 592
             +   +     Q       + P + I     Q ++   +     ++    +IL+   ++
Sbjct: 335 HIISTSKLENKNQNFNFNSSLLPSIRIEP---QTKNPLRKFLAFVKKFTNKKILVVCESR 391

Query: 593 RMAEDLTEYLYERNIRVRYM 612
                L +      +    +
Sbjct: 392 SRQNVLRDLFTSHQLDTHNV 411



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L    G + E  II         ++         ++ + I     +G 
Sbjct: 750 ILTMTATPIPRTLNMALGSLRELSIIATPPAKRSAIQTFVQEWNNNNIKEAITREMHRGG 809

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++ +        + + E L +    I VR  H ++ T E  +I+ D    +F +LV   +
Sbjct: 810 QVFVLHNDIDSIDKMVENLKQIMPKIHVRIAHGQMPTRELKKIMSDFYHARFQILVCTTI 869

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I +A   G  +    L Q  GR  R+ +     YA  I KS QL +
Sbjct: 870 IETGIDIPNANTIIINNAQNFGLAQ----LHQLRGRVGRSHHR---AYAYLIIKSYQL-L 921

Query: 702 DETTRRREKQLEHNKKHN 719
            +T ++R   +E  ++  
Sbjct: 922 SKTAKKRLDVIESLEELG 939


>gi|220926926|ref|YP_002502228.1| transcription-repair coupling factor [Methylobacterium nodulans ORS
           2060]
 gi|219951533|gb|ACL61925.1| transcription-repair coupling factor [Methylobacterium nodulans ORS
           2060]
          Length = 1190

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 92/536 (17%), Positives = 169/536 (31%), Gaps = 85/536 (15%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR----PAIVM--APNKILAAQ 208
           AA+ + ++ +   +    L  V        +A +  A+ +    PA+++  A +   +A 
Sbjct: 19  AALTRAVEALRRGDSP-TLARVPDGFDALVVADLARALGQTAQGPAVLVHVARDGTRSAA 77

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL- 267
             S      P   V               VP  D       S N  I   R +A   L  
Sbjct: 78  FASALAFVAPEIEVLS-------------VPAWDCQPYDRVSPNPAIAAERMTALSRLAR 124

Query: 268 -----ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
                ER   +  +  + +  + + +  +       +G++++  ++++ L    + R   
Sbjct: 125 SRSSEERPRIVATTVNALVQRVPARDRIAVETFSAAVGNALDTDKIVAWLEANGFLRTGT 184

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
               G + V G  I++ P  L     R+  FG+ +E I  F P T + I  + ++ +   
Sbjct: 185 VRDTGEYAVRGGIIDLSPPGL-PNPVRLDFFGDTLESIRSFDPETQRTIGQLRSLDLVPM 243

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSI 442
           S       ++             R   +   G      RL        E +        I
Sbjct: 244 SEVQLTTESIRRF----------RQGYVSTFGAATRDDRL-------YEAVSEGRRAAGI 286

Query: 443 ENYSRYLTGRNPGEPPPTLFEY-------IPEDSLLFVDESHVTIPQISGMYRGDFHRKA 495
           E++      R       TLF+Y          D     D +   + Q+   Y     R  
Sbjct: 287 EHWLPLFADRL-----DTLFDYLAGVPLIFDRD---VDDAAGERLGQVQDYYD---ARCE 335

Query: 496 TLAEYGFRLPSCMDNRPLRFE-------EWNCLRPTTIVVSATP-GSWELEQCQGIIVEQ 547
            L       P     +PL+ +       EW        V   TP    E      I  E 
Sbjct: 336 GLRTPQ---PGVAPYKPLKPDALYLSPAEWAKRVEGATVARLTPFAVPEAAGRSVIDCEA 392

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           +   +   +   E        +     +      G  ++L   ++   + L   L +  +
Sbjct: 393 VPARSFAPERAQE---GVNVFDAAIQHLRDLQGTGHHVILAAWSEGSRDRLCGVLADHGL 449

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                  + KT+ R   +  L+ G+ DV V +  L  G  I    L  I + D  G
Sbjct: 450 ------GKPKTITRFSDVLALKRGQ-DVAVAVWGLESGFTIE--RLAVIAETDILG 496



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 75/191 (39%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  T  VD    +R+  T  + +   + +     +
Sbjct: 790 HVLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLA-VRTFVTPFDPLLIREALLRERYR 848

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V      +++  +L       +    H ++   +  +++     G+FD+L+  
Sbjct: 849 GGQAFYVVPRIDHLDEVKRFLDREMPEAKVGIAHGQMAAGQLEDVMTAFYEGRFDILLST 908

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K++ +
Sbjct: 909 TIVESGLDIPTANTLIVHRADMFGLAQ----LYQLRGRVGRSKARAYALFTTPENKTLTV 964

Query: 700 AIDETTRRREK 710
              +  RR + 
Sbjct: 965 ---QAERRLKV 972



 Score = 40.8 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 4/120 (3%)

Query: 107 ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS 166
            R+++    L+K         +  +         F  +  Y  + DQ AAIA  L  + +
Sbjct: 599 RRILEMAGALIKVAAERFLRSAPRMEPPEGTYGEFAARFPYEETEDQEAAIAATLGDLTA 658

Query: 167 REK-VQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
                +L+ G  G GKT      A V     +   V+ P  +LA Q Y  F   F    V
Sbjct: 659 GRPMDRLICGDVGFGKTEVALRAAFVTAISGKQVAVVVPTTLLARQHYRTFAERFKALPV 718


>gi|229817916|ref|ZP_04448198.1| hypothetical protein BIFANG_03203 [Bifidobacterium angulatum DSM
           20098]
 gi|229784520|gb|EEP20634.1| hypothetical protein BIFANG_03203 [Bifidobacterium angulatum DSM
           20098]
          Length = 1198

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 95/257 (36%), Gaps = 22/257 (8%)

Query: 155 AAIAQLLKG----IHSREKVQLLLGVTGSGKTFTMAKVIEA-MQRPAIVMAPNKILAAQL 209
           AA A +  G            L++G     +    + +         +V+  +   A + 
Sbjct: 38  AAFASVADGTAEPAEDDIDASLIVGAPSGIRPALASAIASNGHTSQVVVIVSSSREAEET 97

Query: 210 YSEFKNFFPHNAVEYF-VSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
            +  ++++  +  +   +  ++    E   PR DT   + +       R++H    + + 
Sbjct: 98  VNALRSWYAGDPSDIAHLEAWETLPHERLSPRADTVASRMAVF----RRLKHPDPANPMF 153

Query: 269 RNDCIVVSSVSCI-----YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
               ++V  V  +      G+G VE           G+ +   E +  LV+  Y R D+ 
Sbjct: 154 GPIRMLVMPVRSLIQPVVAGLGDVEPLV-----FVKGEELPLDEAVERLVRNAYTRVDLV 208

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIKIYAN 382
           + RG F V G  +++FP        R+  FG++I+EI EF+    +   + V+TI     
Sbjct: 209 MNRGEFAVRGGILDVFPPTY-PHPVRIEFFGDEIDEIREFHASDQRTYGDGVDTIWATPC 267

Query: 383 SHYVTPRPTLNTAMKYI 399
                       A   I
Sbjct: 268 RELQLTDAVRARAKSLI 284



 Score = 42.4 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 65/182 (35%), Gaps = 19/182 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 798 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAVRRELLRG 856

Query: 583 LRILLTVLTKRMAEDLT-------EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            ++          ED+          + E ++ +   H ++   +  ++IRD      DV
Sbjct: 857 GQVFYL---HNRVEDIASVADKIHNLVPESHVGIA--HGKMGEKQLDQVIRDFWHRDIDV 911

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    +K
Sbjct: 912 LVCTTIIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPSK 967

Query: 696 SI 697
            +
Sbjct: 968 PM 969


>gi|25027590|ref|NP_737644.1| putative transcription-repair coupling factor [Corynebacterium
           efficiens YS-314]
 gi|23492872|dbj|BAC17844.1| putative transcription-repair coupling factor [Corynebacterium
           efficiens YS-314]
          Length = 1218

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 104/641 (16%), Positives = 195/641 (30%), Gaps = 105/641 (16%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
             +   L GV    + + +  +  A   P +V+      A  L +E +       V +F 
Sbjct: 26  GARNLHLTGV-DQARPWVIGTL--AHHAPVLVVTATGREAEDLTAELRAMMGD-KVAWFP 81

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
           S+ +    E   P  D    +   +N+                +  I+V++         
Sbjct: 82  SW-ETLPHERLSPGVDIVGRRAQVLNKL--------------DDAKIIVTAARAFCQPVL 126

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            E+  +  + L+ G   +   L   LV + YK  D+   RG F   G  +++FP+ L D 
Sbjct: 127 KEAAGRQPLILREGAEADFSALGEELVFRAYKNVDMVAKRGEFATRGGILDVFPTTL-DY 185

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRN--VETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
             R+  +G+++ +I +F     + I    ++ I+IY     +        A + +     
Sbjct: 186 PVRIEFWGDEVSDIRQFSVADQRTIPEMTLDEIEIYPARELLITDEVAARAAELM----- 240

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
             +        +    R+  R   D            +E     L       P   L E 
Sbjct: 241 --VKHPGNPTLVEMLSRISDRTDVD-----------GMEALIPAL----VDTPMVPLLEL 283

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKA---TLAEYGFRLPSCMDNRPLRFEEWNCL 521
           +PE++ + V        +I+ +   D    A     A  G   P  +    L    +   
Sbjct: 284 MPENTHIMVIAPEKVRTRIADLEATDAEFMAAGWEAAAMGADGPVSVKGLDLEASSYRSY 343

Query: 522 RPTTIVVSATPGSW---------ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
               +  S +   W         E    + + ++    PT   D           + ++ 
Sbjct: 344 DSLEVSASTSNLPWWTFAPTGMFEASDAETLPLDFEPGPTPRGDLEA--------INEMM 395

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             +    + G R      ++     + E   E+ I         +               
Sbjct: 396 ALLLAHTKAGGRAAFIAPSEGAIRRMVERFAEQGIPTHVATPGWEPSP------------ 443

Query: 633 FDVLVGINLLREGLDIPECG---------LVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
             V +   L   GL  P+           LV I + D  G      +  +   R AR  N
Sbjct: 444 GQVTLYHALSHAGLVFPKVRKHRDADALPLVVITETDLTGNRVGDIAGAKR--RPARRRN 501

Query: 684 S----------------KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
                              I     +T+      DET+RR    LE+       P     
Sbjct: 502 KVDPLALTPGDLVVHETHGIGRFIKMTERTISTGDETSRREYIVLEYAPSKRGQPGDQLY 561

Query: 728 KIMEVIDPI--LLEDAATTNISIDAQQLSLSKKKGKAHLKS 766
             M+ +D +   +     T   +       +KKK +A ++ 
Sbjct: 562 VPMDSLDMLSRYVGGEKPTLSKMGGSDWKNTKKKARAAVRE 602



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     T ++ PP +     T V   ED     ++  + 
Sbjct: 790 VLTMSATPIPRTLEMSMAGIREM----TTMLTPPEDRHPILTYVGPYEDKQVAASIRREL 845

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     L +     R +  H ++      + ++     ++DVLV
Sbjct: 846 LRDGQVFFIHNKVADIEKKARELRDLVPEARVVVAHGQMSEELLEQTVQGFWDREYDVLV 905

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + + +A   G  +    L Q  GR  R+       +        
Sbjct: 906 CTTIVETGLDIANANTLIVENAHHMGLSQ----LHQLRGRVGRSRERGYAYFLYPKG--- 958

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET+  R   +  N    
Sbjct: 959 -ATLTETSYDRLATIAQNNDLG 979


>gi|126696368|ref|YP_001091254.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9301]
 gi|126543411|gb|ABO17653.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9301]
          Length = 1169

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 101/542 (18%), Positives = 202/542 (37%), Gaps = 87/542 (16%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +L+K I S+     ++G +   K+  +  + +   +  +++ PN+ +A +    F++   
Sbjct: 18  ELIKRI-SKNNELNIIGSSRYAKSIILNSIAKTEGKNILLICPNEEIAYKWIGYFES-IN 75

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC---IVV 275
           + AV Y       Y P  ++P +     K      +I+  + +    L+E+      IV+
Sbjct: 76  NKAVLY-------YPPTEHLPYSSINKSK------EIEFSQLTVLSKLIEKEKNELNIVI 122

Query: 276 SSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           S+   +   + +     +  + L+ G  +E KEL + L    Y ++++    G +   G+
Sbjct: 123 STERSLQPHLVNKNLLIENKLNLQKGVQIEIKELANKLTLLGYTKENVTSSEGFWSRRGE 182

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I+I+P + E    R+  F N IE+I E+ P T + + ++  I+I               
Sbjct: 183 IIDIYPVNNE-FPVRLEFFDNVIEKIREYDPHTQKTLESINNIEIIQAGF---------- 231

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
               IK++L                  L +   ++ E +          N  RYL     
Sbjct: 232 -DLLIKDKL----------------NNLSKNSIFNSEDINKN-------NLDRYLGIIE- 266

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR--------KATLAEYGFRLPS 506
            E P  + ++I ++++L +DE        +  Y                 L      L  
Sbjct: 267 -EEPRNIIDFINKETILVIDELEDCKKFANNWYLDSESNFDNCVYELNENLKNNDINL-E 324

Query: 507 CMDNRPLRFEE-WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565
              N  L+FEE  N LR   ++       +E E  +  I  + +     ++      S  
Sbjct: 325 AKPNLHLKFEEILNSLRNFNLI-----KFYEFE-SKVNIDNRFLLNDKRLN------SYS 372

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
             +  + ++IN   +   ++ +          L   L+E      ++++        E  
Sbjct: 373 KNIGKLSNDINKNIKNNEKVWILSAQPLRTRTL---LFEHECNTNFLNNPNDI---DEAF 426

Query: 626 RDLRLGKFDVLVGINLLR-EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + +      +L   N    EG  +P   +V I   DKE F +        I R  R+VNS
Sbjct: 427 KSINNSTPLILKNKNNYEIEGFSLPIWKVVLI--TDKELFSQQSLFNNVFIRRKKRSVNS 484

Query: 685 KV 686
            +
Sbjct: 485 NI 486



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 77/192 (40%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-VEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +  T       ++   +   ++ +   IN    +G 
Sbjct: 764 VLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAINKELDRGG 823

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I   +      +   + L      ++++  H ++   E    +     G+ D+++   +
Sbjct: 824 QIFYVLPRISDIDQAIDKLKNMIPNLKFIVAHGQMNETELENAMIAFNNGEVDLMICTTI 883

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP+   + I D+ K G L     L   +GR+   V +   L+   I K     I
Sbjct: 884 IESGLDIPKVNTIIIEDSHKFG-LSQLYQLRGRVGRSG--VQAHAWLFYPNINK-----I 935

Query: 702 DETTRRREKQLE 713
           ++  ++R K ++
Sbjct: 936 NDAAKQRLKAIK 947


>gi|224543056|ref|ZP_03683595.1| hypothetical protein CATMIT_02256 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523996|gb|EEF93101.1| hypothetical protein CATMIT_02256 [Catenibacterium mitsuokai DSM
           15897]
          Length = 1150

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 116/326 (35%), Gaps = 30/326 (9%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           + S + + +A       R  +++  N+  A  LY         N V YF           
Sbjct: 31  STSDEAYLIAGSFWHNPRKILIIKNNQYEAFNLYKTLTELV--NQVVYF----------- 77

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIV 295
             P  ++   +  + + ++   R +A  ++ +    I V  +  +   I  V+ + + I+
Sbjct: 78  --PADESLRVESVAYSYELLGERINALYAMTQDKPMICVCHMHSMTRYITPVDLFKKSII 135

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            LK GD+++  EL   L    YK          +   G+ ++++     D   R+  F +
Sbjct: 136 SLKKGDTIDPLELKKMLQFIGYKNTQRVDSPFYYSRRGEVLDVYTIQY-DHPVRIEFFDD 194

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +IEEIS +   + ++   +E+I I   +  +     L+     I+  LK ++   +    
Sbjct: 195 EIEEISFYDKDSQRRTNKIESIDILPATDMMYEDDGLSQVEASIQT-LKDKMTVKDDFKD 253

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
            LE     Q    D+E L+       I  Y              T+ +Y   D  +    
Sbjct: 254 ELE-----QTYALDIESLKAHDYNPRIYQYLGLFP------ETATIMDY-ARDYTIITAS 301

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYG 501
               +         ++     L E G
Sbjct: 302 LASILASYKTYMEENYLYYHELEEIG 327



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 69/187 (36%), Gaps = 12/187 (6%)

Query: 525 TIVVSATPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
            + ++ATP    L+        + QI  P  L   PV+   +      +   I     + 
Sbjct: 752 VLTLTATPIPRTLQMSIMGIRGLSQIETPP-LNRLPVQTYVSEKSWALIKQVIERELSRN 810

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++           ++   L       R    H ++   E  +++ D    K+D+LV   
Sbjct: 811 GQVFYLHNRTENIYEIASTLQTLLPHARIGVGHGQMDKTELEDVMTDFVEKKYDILVCTT 870

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+DIP    + I +ADK G  +    L Q  GR  R+          T  +++   
Sbjct: 871 IIETGIDIPNANTIIIENADKFGLAQ----LYQIKGRVGRSARIAYAYLLYTKDRAMT-- 924

Query: 701 IDETTRR 707
            +E  +R
Sbjct: 925 -EEAQKR 930


>gi|269976100|ref|ZP_06183099.1| transcription-repair coupling factor [Mobiluncus mulieris 28-1]
 gi|269935693|gb|EEZ92228.1| transcription-repair coupling factor [Mobiluncus mulieris 28-1]
          Length = 1172

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 72/487 (14%), Positives = 159/487 (32%), Gaps = 64/487 (13%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +++ P+   A +L  +   +     VE F  + +    E   PRTDT   +       +
Sbjct: 41  TVILTPSGRGAEELARDLSCWT--RGVEVFPDW-ETLPHERLSPRTDTMARRI----WAL 93

Query: 256 DRMRHS------ATRSLLER--NDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS---VE 304
            R+ H        T S +        +   V  +    +  +   +   L          
Sbjct: 94  HRLTHPEAFGTEGTNSEVGESTEHNPIKFLVVPMRAALAPVNTKILSYPLFKAQVGKAYG 153

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + E+   L    Y+R ++ + RG + + G  +++F + +     R+ +FG++I+ I  F 
Sbjct: 154 RDEMSRDLAALGYERTELVVTRGQYSLRGGIVDVFSA-VSPHPVRIELFGDEIDSIRPFA 212

Query: 365 PLTGQKI-RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
               +   + ++++   A   ++        A       L  +L +  +   L       
Sbjct: 213 VSDQRTFDQELQSVTAPACREFLLDETARVHA-----ASLAAQLPQAAEILNLAA----- 262

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
                           + +E+    L     G     LFE +P  + L   +    +P++
Sbjct: 263 -----------QGIYSEGLESLGALL-----GAEMKPLFELLPPGARLVATD----LPRL 302

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
                      A      +   +     PL     + L    + VS      +  +    
Sbjct: 303 EARAVELGETTAEFLAASWSAAADGSEIPLEINTASFLDLDALRVSEAKAGMKTLRISPF 362

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
              +    +G    P+           +   I    ++   +++   +  M + L   L 
Sbjct: 363 ATHESATTSGAETVPL---PTTGATG-IISTIRERVREHWTVVIAATSNGMVQRLHTLLT 418

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           E +I  + + +++            R GK  V V    + EG  + E  L+ I +A+  G
Sbjct: 419 ENDIPAQ-VSADLDAEPE-------RSGKTWVTVAP--ITEGFALAEAKLLVISEAEALG 468

Query: 664 FLRSKTS 670
             +++  
Sbjct: 469 KRQARHH 475



 Score = 43.5 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 13/150 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVEDVYDE-----INLA 578
            + +SATP    LE          IR    +  P E R    T V    D      I   
Sbjct: 776 VLAMSATPIPRTLEMAITG-----IRGLSTLTTPPEERHPVLTYVGAYSDRQVAAAIRRE 830

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVL 636
             +  ++       +    + ++L       R    H ++   +  +++ D    +FDVL
Sbjct: 831 MLRDGQVFYVHNRVQDIARVAKHLQSLVPEARIRVGHGQMPETQLEQVMMDFWNQEFDVL 890

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLR 666
           V   ++  GLD+     + I  A++ G  +
Sbjct: 891 VSTTIVENGLDVTNANTIIIDRAERMGLSQ 920


>gi|259507006|ref|ZP_05749906.1| transcription-repair coupling factor [Corynebacterium efficiens
           YS-314]
 gi|259165458|gb|EEW50012.1| transcription-repair coupling factor [Corynebacterium efficiens
           YS-314]
          Length = 1215

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 104/641 (16%), Positives = 195/641 (30%), Gaps = 105/641 (16%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
             +   L GV    + + +  +  A   P +V+      A  L +E +       V +F 
Sbjct: 23  GARNLHLTGV-DQARPWVIGTL--AHHAPVLVVTATGREAEDLTAELRAMMGD-KVAWFP 78

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
           S+ +    E   P  D    +   +N+                +  I+V++         
Sbjct: 79  SW-ETLPHERLSPGVDIVGRRAQVLNKL--------------DDAKIIVTAARAFCQPVL 123

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            E+  +  + L+ G   +   L   LV + YK  D+   RG F   G  +++FP+ L D 
Sbjct: 124 KEAAGRQPLILREGAEADFSALGEELVFRAYKNVDMVAKRGEFATRGGILDVFPTTL-DY 182

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRN--VETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
             R+  +G+++ +I +F     + I    ++ I+IY     +        A + +     
Sbjct: 183 PVRIEFWGDEVSDIRQFSVADQRTIPEMTLDEIEIYPARELLITDEVAARAAELM----- 237

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
             +        +    R+  R   D            +E     L       P   L E 
Sbjct: 238 --VKHPGNPTLVEMLSRISDRTDVD-----------GMEALIPAL----VDTPMVPLLEL 280

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKA---TLAEYGFRLPSCMDNRPLRFEEWNCL 521
           +PE++ + V        +I+ +   D    A     A  G   P  +    L    +   
Sbjct: 281 MPENTHIMVIAPEKVRTRIADLEATDAEFMAAGWEAAAMGADGPVSVKGLDLEASSYRSY 340

Query: 522 RPTTIVVSATPGSW---------ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
               +  S +   W         E    + + ++    PT   D           + ++ 
Sbjct: 341 DSLEVSASTSNLPWWTFAPTGMFEASDAETLPLDFEPGPTPRGDLEA--------INEMM 392

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             +    + G R      ++     + E   E+ I         +               
Sbjct: 393 ALLLAHTKAGGRAAFIAPSEGAIRRMVERFAEQGIPTHVATPGWEPSP------------ 440

Query: 633 FDVLVGINLLREGLDIPECG---------LVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
             V +   L   GL  P+           LV I + D  G      +  +   R AR  N
Sbjct: 441 GQVTLYHALSHAGLVFPKVRKHRDADALPLVVITETDLTGNRVGDIAGAKR--RPARRRN 498

Query: 684 S----------------KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
                              I     +T+      DET+RR    LE+       P     
Sbjct: 499 KVDPLALTPGDLVVHETHGIGRFIKMTERTISTGDETSRREYIVLEYAPSKRGQPGDQLY 558

Query: 728 KIMEVIDPI--LLEDAATTNISIDAQQLSLSKKKGKAHLKS 766
             M+ +D +   +     T   +       +KKK +A ++ 
Sbjct: 559 VPMDSLDMLSRYVGGEKPTLSKMGGSDWKNTKKKARAAVRE 599



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     T ++ PP +     T V   ED     ++  + 
Sbjct: 787 VLTMSATPIPRTLEMSMAGIREM----TTMLTPPEDRHPILTYVGPYEDKQVAASIRREL 842

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     L +     R +  H ++      + ++     ++DVLV
Sbjct: 843 LRDGQVFFIHNKVADIEKKARELRDLVPEARVVVAHGQMSEELLEQTVQGFWDREYDVLV 902

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + + +A   G  +    L Q  GR  R+       +        
Sbjct: 903 CTTIVETGLDIANANTLIVENAHHMGLSQ----LHQLRGRVGRSRERGYAYFLYPKG--- 955

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET+  R   +  N    
Sbjct: 956 -ATLTETSYDRLATIAQNNDLG 976


>gi|84503554|ref|ZP_01001605.1| transcription-repair coupling factor [Oceanicola batsensis
           HTCC2597]
 gi|84388044|gb|EAQ01092.1| transcription-repair coupling factor [Oceanicola batsensis
           HTCC2597]
          Length = 1152

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/319 (15%), Positives = 106/319 (33%), Gaps = 41/319 (12%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
            L G         +         P + +A +    A +    + F P   V  F      
Sbjct: 9   TLGGAPEGFDAALVLSEAAKCDGPVVHIALDDKRMAAMADALRFFDPAMPVLQF------ 62

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER---NDCIVVSSVSCIYGIGSVE 288
                  P  D       S N  I   R +   +L+        ++ +  +    + + +
Sbjct: 63  -------PAWDCLPYDRVSPNADISASRMATLAALVHGMPSRFVLLTTVNAATQRLPARD 115

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
                    ++G  +++  L + LV+  + +       G + + G  ++I+P   E    
Sbjct: 116 VLRDAAFIARVGHRIDEAALRTFLVRMGFSQSHSVTEPGDYAIRGGIVDIYPP-GEIGPV 174

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+ +FG+ ++    F   T +    ++TI++   S  +     +    +  + E      
Sbjct: 175 RLDLFGDVLDGARRFDAATQRTTEKLDTIELAPVSEVILDEAAITRFRQNYRIE------ 228

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
                G                E +      Q IE++  +       E   TLF+Y+P D
Sbjct: 229 -FGAAGTD----------DPLYEAVSAGRKQQGIEHWLPFFH-----ERLETLFDYLP-D 271

Query: 469 SLLFVDESHVTIPQISGMY 487
           + + +DE  VT  +I+   
Sbjct: 272 ASVMLDE-QVTAARIARWE 289



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 69/183 (37%), Gaps = 9/183 (4%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  +D    IR+  ++ +   + + +     +
Sbjct: 751 HVLTLTATPIPRTLQLSLSGVRDLSIIGTPPIDRLA-IRTYVSEFDAVTIREALLRERYR 809

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ E+L      V Y+  H ++   E  + +     GKFDVL+  
Sbjct: 810 GGQSFYVVPRISDLAEVEEFLKAEVPEVSYVVAHGQMAAGELDQRMNAFYDGKFDVLLAT 869

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R                +  
Sbjct: 870 TIVESGLDIPRANTIIVHRADMFGLAQ----LYQIRGRVGRAKTRAYAYLTTKPRVRLTP 925

Query: 700 AID 702
           A +
Sbjct: 926 AAE 928



 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 10/164 (6%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPA 196
           FQ +  Y  + DQ AAI  ++  + S     +L+ G  G GKT      A V        
Sbjct: 594 FQARFPYQETDDQLAAIEDVMTDMLSGHPMDRLICGDVGFGKTEVALRAAFVAAMSGVQV 653

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
            V+AP  +LA Q Y  F   F    ++         Q EA     D   E  +     I 
Sbjct: 654 AVIAPTTLLARQHYQGFAERFRGFPLQVSPLSRFVSQKEA-----DRTREGLAKGTVDIV 708

Query: 257 RMRHSAT-RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
              H+   +S+   N  +++      +G+G  E   Q+   + +
Sbjct: 709 VGTHALLAKSIRFHNLGLLIVDEEQRFGVGHKERLKQLKSDVHV 752


>gi|325335423|gb|ADZ11697.1| Transcription-repair coupling factor (superfamily II helicase)
           [Riemerella anatipestifer RA-GD]
          Length = 1097

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/386 (13%), Positives = 129/386 (33%), Gaps = 54/386 (13%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
            +   + G+ GS  +   A++     +P +++  +K  A    +E +     + V YF  
Sbjct: 30  HQHISVKGMAGSSPSLICAELFLTQNQPILLIVDDKEDAHYTTTELEELLGEDKVLYF-- 87

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS--VSCIYGIG 285
                      P T     +          +R      L    +  V+ +   +    + 
Sbjct: 88  -----------PATHLEPYQTEKTQNANLVLRTEVLNQLNANPEPKVIVAHYAALCEKVL 136

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
             E +  +   +K+G  ++       L +  +   D     G F V G  +++F S+  D
Sbjct: 137 KKEDFKAISHHIKVGYQLDFDFTGELLEQFNFHLTDFVSEPGEFAVRGGIVDVF-SYAND 195

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR---------------- 389
             +R++ FGN++E I  F   T   I  VE++++ +N ++                    
Sbjct: 196 KPYRITFFGNEVESIKTFDIETQLSISKVESLQLVSNMNFAVQGTKVPFLDLLPKDSFIV 255

Query: 390 -PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN---- 444
                  + YI++       +  +    ++ Q+  +    D    +T    ++++     
Sbjct: 256 TKNAYLGLNYIRDFYTKAEEKYTQLNSDIKHQKPNELFISDEVFFKTYQKFRTVDFTSQS 315

Query: 445 ----YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
                + ++  +   +P         ++  L +++      Q   ++      K      
Sbjct: 316 LQLPQAPFIELKQNPQPS------FNKNFELLIEDLEEKQKQGFNLWISFSSEKQK---- 365

Query: 501 GFRLPSCMDNR--PLRFEEWNCLRPT 524
             RL S  ++    + F+ +      
Sbjct: 366 -ERLKSIFEDLGSAISFQFFKSELHQ 390



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +  +I+       PVE +      E + D I+   Q+  
Sbjct: 708 TLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVETQLIGFDEEIIRDAISYELQRDG 767

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +D+   +       R +  H ++   +  E I D   G++DVLV   +
Sbjct: 768 QVYFINNRIDNLKDIAGMIQRLVPDARVITGHGQMDGKQLEENILDFMEGRYDVLVSTTI 827

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I DA + G       + Q  GR  R+ N K   Y  T    +   +
Sbjct: 828 VESGVDVPNANTIFINDAQRFG----MADVHQMRGRVGRS-NRKAFCYLITPPFDM---V 879

Query: 702 DETTRRREKQLE 713
               R+R + +E
Sbjct: 880 TSDARKRLEAIE 891


>gi|254563490|ref|YP_003070585.1| transcription repair coupling protein, ATP-dependent helicase
           [Methylobacterium extorquens DM4]
 gi|254270768|emb|CAX26773.1| transcription repair coupling protein, ATP-dependent helicase
           [Methylobacterium extorquens DM4]
          Length = 1196

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 82/509 (16%), Positives = 155/509 (30%), Gaps = 80/509 (15%)

Query: 188 VIEAMQRPAIVMAPNKILA---AQLYSEFKNFFPHNAVEY-----------FVSYYDYYQ 233
            I+    P +   P+   A   A L       F   AV             F +   +  
Sbjct: 32  AIKRGDSPTLASVPDGFDALVAADLARALSGSFEGPAVLVHVARDSGRSNAFQNALKFVA 91

Query: 234 PEAY---VPRTDTYIEKESSINEQIDRMRHSATRSLL------ERNDCIVVSSVSCIYGI 284
           PE     VP  D       S N  I   R +A   L       E+   +  +  + +  +
Sbjct: 92  PEIEAMSVPAWDCQPYDRVSPNGAIAAQRMTALSRLTRSRSSEEKPRILCTTVNALVQRV 151

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
                 +       IG+ V   ++++ +    + R       G + V G  +++ P  L 
Sbjct: 152 PPRSRVAVETFSAAIGNVVPMDKVVAWVEANGFLRTGTVRDTGEYAVRGGILDLSPPGL- 210

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
               R+  FG+ +E I  F P T + + ++ ++ +   S       T+            
Sbjct: 211 PNPIRLDFFGDTLESIRAFDPETQRTVGSLRSLDLVPMSEVQLTTETIRRF--------- 261

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            R   L   G      RL + ++              +E++          +   TLF+Y
Sbjct: 262 -RQGYLSSFGAATRDDRLYETVS-------EGRRYAGLEHWMPLFY-----DGLDTLFDY 308

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +  D  +  D           +      R A + +Y     + + N       +  L P 
Sbjct: 309 LG-DVPMLFDP---------QVEEAATERLALIQDYFQAREAALKNPQSGVAPYKPLPPR 358

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI---------------RSARTQVE 569
            + +  TP  W+ +   G +V          D    I                 A +  +
Sbjct: 359 ALYL--TPNEWKSKVESGTVVRLTPFAMPDSDERAVIDCGARAGRSFAPERADDAASVFD 416

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                I      G  ++L   ++   + L   L +  ++      +   +     +  L+
Sbjct: 417 AAVAHIRDLQASGHHVILGSWSEGSRDRLCGVLTDHGLK------KPTVINTFAAVNALK 470

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD 658
            G  DV V +  L  G  +    +VA  D
Sbjct: 471 RGT-DVAVAVWGLESGFTLDRLAVVAEGD 498



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 73/191 (38%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  T  +D    +R+  T  + +   + +     +
Sbjct: 795 HVLTLSATPIPRTLQLAMTGVRELSIIATPPMDRLA-VRTFVTPFDPLLVREALLRERYR 853

Query: 582 GLRILLTVLTKRMAEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +            ++  +L        V   H ++   +  +++     GK+DVL+  
Sbjct: 854 GGQSFYVAPRIEDLAEVKRFLDTEMPETTVAVAHGQMAAGQLEDVMTAFYEGKYDVLLST 913

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G      +L Q  GR  R   SK   YA   T + + 
Sbjct: 914 TIVESGLDIPTANTLIVHRADMFGL----AALYQLRGRVGR---SKARAYALFTTPANRQ 966

Query: 700 AIDETTRRREK 710
              +  +R + 
Sbjct: 967 LTTQAEQRLKV 977


>gi|224026055|ref|ZP_03644421.1| hypothetical protein BACCOPRO_02808 [Bacteroides coprophilus DSM
           18228]
 gi|224019291|gb|EEF77289.1| hypothetical protein BACCOPRO_02808 [Bacteroides coprophilus DSM
           18228]
          Length = 269

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 94/232 (40%), Gaps = 19/232 (8%)

Query: 154 PAA--IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           P A  +A L+   +   +   L GV  S  +   + V+++  R  + +  +   A   Y 
Sbjct: 14  PNAEGLASLMN--NPEIRTIFLEGVHASCTSLFASGVVKSADRVHLFILNDLEEAGYFYH 71

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +         + +F S Y              Y +K+++     + +R      L +   
Sbjct: 72  DLVQVDGDEHILFFPSSYRRAIK---------YGQKDAAN----EILRTEVLSRLEKDEP 118

Query: 272 CIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            +VV+    +   + S    +   ++L++G  VE +E+LS+L +  ++  D     G F 
Sbjct: 119 LVVVTYPEALAEKVVSRNELTDRTMKLQVGQHVETEEILSTLTEYGFEHVDYVYEPGQFA 178

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           + G  ++++ S   +  +R+  FG++I+ I  F   T       +++ I   
Sbjct: 179 MRGSILDVY-SFASEYPYRIDFFGDEIDSIRTFEVETQLSKEKKDSVSIVPE 229


>gi|219872109|ref|YP_002476484.1| transcription-repair coupling factor [Haemophilus parasuis SH0165]
 gi|219692313|gb|ACL33536.1| transcription-repair coupling factor [Haemophilus parasuis SH0165]
          Length = 1217

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 117/320 (36%), Gaps = 38/320 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +  Q L  + G   T  + +  +  Q   +V+ P+   A +L           ++  F  
Sbjct: 85  QDHQTLGNLIGHSDTLAIVQTSQQFQGLTVVVTPDTRTALRL---------EKSLPSFTK 135

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-NDCIVVSSVSCIYGIGS 286
                 P    P  +T      S ++ I   R SA   L +      ++   + +  +  
Sbjct: 136 L-----PVQLFPDWETLPYDNFSPHQDIISARLSALFQLQQGQKQIFLLPINTLLQKVCP 190

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
               +  ++ +K GD    ++L   L    Y+  +  +  G + V G  ++++P    + 
Sbjct: 191 PSYLANNVLLIKKGDRFSIEKLRLQLENAGYRAVEQVLEYGEYAVRGALLDLYPM-GANS 249

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ I  F     + I  ++ I +     +    PT +  ++Y + + + +
Sbjct: 250 PYRLDFFDDEIDTIRTFDVDNQRTIEQIDAINLLPAHEF----PTDSNGIEYFRGKFREQ 305

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             E+ +     E + + Q+++              IE +          E   +LF+Y+P
Sbjct: 306 FGEIRR-----EPEHIYQQVSK-------GILNAGIEYWQPLFF-----EQMASLFDYLP 348

Query: 467 EDS-LLFVDESHVTIPQISG 485
           E +  +   +      Q   
Sbjct: 349 EQTLFITFADIQQKAEQFQQ 368



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R +   V  + + I     +
Sbjct: 825 ILTLTATPIPRTLNMALNGMRDLSIIASPPARRLSIKTFVRQSDDTV--IKEAILREILR 882

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+  + L E     R +  H +++  E   ++ D    +F++LV  
Sbjct: 883 GGQVYYLHNDVATIENTAQQLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCS 942

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 943 TIIETGIDVPTANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYMLTPPPKTLTK 998


>gi|260591441|ref|ZP_05856899.1| transcription-repair coupling factor [Prevotella veroralis F0319]
 gi|260536633|gb|EEX19250.1| transcription-repair coupling factor [Prevotella veroralis F0319]
          Length = 1187

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 115/325 (35%), Gaps = 38/325 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  AI ++ +    + +   L G+  S      A + E  ++  + +  +   A   Y++
Sbjct: 15  QVGAITKIQE--DQQVRSIFLQGLVASAAPMFFAAIAERWKKTIVFVLSDNEEAGYFYND 72

Query: 213 FKNF-FPHNA------VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT-R 264
            K    P +       V +F S Y       Y  R       E    E + R+   AT +
Sbjct: 73  LKTITMPEDGTSNTAEVLFFPSSYRRA--VKYGQRD---AGNEILRTEVLTRLSALATEK 127

Query: 265 SLLERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
               R    +V+  S +   + S     +  + L +   ++  E+  +L    +   D  
Sbjct: 128 GTTNRLPLYIVTDPSALSEQVVSKRQLDERRLSLSVNQHIDIVEVEKTLRSFGFTETDYV 187

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G F V G  ++++ S+  ++ +R+  FG+DIE I  F   +    + +E I++    
Sbjct: 188 YEPGQFAVRGSILDVY-SYSGELPYRIDFFGDDIETIRTFEVESQLSSKKLEHIEVVPEL 246

Query: 384 HYVTPRPT-------------------LNTAMKYIKEEL--KMRLIELEKEGRLLEAQRL 422
             +                        +  A++ I +E      L    +    +E   L
Sbjct: 247 ATLLEEKVPFLHFLPSDSFLAFKDFLYVRDAIENIYKEGFTAQALTVQREGKTEVEQHEL 306

Query: 423 EQRITYDLEMLETTGSCQSIENYSR 447
           EQ    + +++  +       NY R
Sbjct: 307 EQAFRKEGQLITASHFMNEALNYRR 331



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 15/194 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     I+R       P++ + A    E + D IN    +  
Sbjct: 767 TLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTQIASFSHEVIADAINFEMSRNG 826

Query: 584 RI-LLTVLTKRMAED---LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++  +      + E    + +Y+ +  + +   H ++K  E  +II       +DVL+  
Sbjct: 827 QVYFVNNRVGNLPEIANLIKKYVPDCRVAIG--HGQMKPEELEKIIMGFMNYDYDVLLST 884

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I +A + G     + L Q  GR  R+ N K   Y   +      
Sbjct: 885 TIVENGIDISNANTIIINEAHRFGL----SDLHQMRGRVGRS-NKKAFCY---LLAPPLA 936

Query: 700 AIDETTRRREKQLE 713
           A++   R R   LE
Sbjct: 937 ALNSDARHRLLALE 950


>gi|329915573|ref|ZP_08276288.1| Transcription-repair coupling factor [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327544874|gb|EGF30242.1| Transcription-repair coupling factor [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 1120

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 66/419 (15%), Positives = 135/419 (32%), Gaps = 50/419 (11%)

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
             ++A  +   ++  N   A +L +E         + +F    +       +P  +T   
Sbjct: 7   AALKAQNKMLAIVVANAADAQRLLTE---------IPWFAQEGEPALRCHLLPDWETLPY 57

Query: 247 KESSINEQIDRMRHSATRSLLERND-CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
              S ++ +   R +    +       ++V + + +  +      +      K G+ +++
Sbjct: 58  DAFSPHQDLVSERLATLYEMQNGQCDVLIVPATTALVRMAPPSFLAAYTFFFKQGEVLDE 117

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
             L + L    Y      +  G + V G  I++FP     + +R+ +FG+ IE I  F  
Sbjct: 118 ARLKTQLSLAGYTPVSQVMSPGEYSVRGGLIDLFPMGSA-LPYRIDLFGDTIETIRTFDA 176

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
            T + +  V  +++     +                     L      GR  E    +  
Sbjct: 177 DTQRSLYPVREVRLLPGREFPMDD-----------------LARTAFRGRWREVFEGDPS 219

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
            +   + +    +   IE Y          E   TLF+Y+P D+   +  S      I  
Sbjct: 220 RSSVYKDIGNGIAAAGIEYYLPLFF-----EDTRTLFDYLPGDTTFAL--SGDIDGAIGR 272

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
            +     R   L     R     +   L  EE+     +        G W L        
Sbjct: 273 FWNDTRSRHNFLKSDRERPILSPEKLFLTDEEFFTRAKSF-------GRWILHADDQPSE 325

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
                P   V+     R +   + ++   +  +A+   R+++   T    E L +Y  E
Sbjct: 326 LSAPLPNIAVN-----RRSDDPLINLRSYLLYSAK---RVMICAETNGRRETLQQYFNE 376



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 15/166 (9%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L    +G+    II   P   +     +RS    V  + +      ++
Sbjct: 728 VLTLTATPIPRTLGMALEGLRDFSIIATAPQKRLAIKTFVRSEGESV--IREACLRELKR 785

Query: 582 GLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          E+    L   L E  I V   H ++   E  +++RD    +F++L+
Sbjct: 786 GGQVYFLHNEVDTIENRKQMLEALLPEARIGVA--HGQMHERELEKVMRDFVAQRFNILL 843

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
              ++  G+D+P    + +  ADK G  +    L Q  GR  R+ +
Sbjct: 844 CTTIIETGIDVPTANTIIMHRADKFGLAQ----LHQLRGRVGRSHH 885


>gi|257068518|ref|YP_003154773.1| transcription-repair coupling factor Mfd [Brachybacterium faecium
           DSM 4810]
 gi|256559336|gb|ACU85183.1| transcription-repair coupling factor Mfd [Brachybacterium faecium
           DSM 4810]
          Length = 1211

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 91/251 (36%), Gaps = 27/251 (10%)

Query: 145 TDYHPSGDQPA------AIAQLLK-GIHSREKVQLL--LGVTGSGKTFTMAKVIEAM--Q 193
               P  DQ A      A+  L++ G  S E   ++   G+      F +A +      +
Sbjct: 15  APLRPLLDQLARGRDLTAVRDLVEAGAESGEGGSIVAATGL----FPFLVADLARRATAE 70

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +P +++         L +          +    ++ +    E   PR DT  ++ S+   
Sbjct: 71  QPLVIVTATTRATEDLRAALSALVGTEHLVELPAW-ETLPHERLSPRADTVAKRLST--- 126

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
            + R+ H  +          V S +  I  G+G +           +GD+   ++L   L
Sbjct: 127 -LRRIAHPESEDPAHVVLMPVRSLLQPIAKGLGELRPVRAA-----VGDTYPLEDLERDL 180

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
               Y R D+   RG F V G  +++FP   E    RV +FG++I+++  F     + + 
Sbjct: 181 TGAAYARVDMVEKRGEFAVRGGILDVFPP-TEPHPVRVDLFGDEIDDVRYFSVADQRSLD 239

Query: 373 NVETIKIYANS 383
                      
Sbjct: 240 PAPRGLDAPPC 250



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 66/182 (36%), Gaps = 15/182 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E  I  T    PP E     T V   ED      +  + 
Sbjct: 794 VLSMSATPIPRTLEMAVTGIRELSILAT----PPEERHPVLTYVGAQEDKQVTAAIRREL 849

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          + +  +L E     R    H ++   +   ++ D     FDVLV
Sbjct: 850 LREGQVFYIHNRVEDIDRVAAHLRELVPDARVQVAHGKMNEHQLERVLIDFWERDFDVLV 909

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + + +AD+ G  +    L Q  GR  R+       +    TK +
Sbjct: 910 CTTIVETGLDISNANTLIVENADRFGLSQ----LHQLRGRVGRSSERAYAYFLYNATKPL 965

Query: 698 QL 699
             
Sbjct: 966 TE 967


>gi|307701502|ref|ZP_07638520.1| transcription-repair coupling factor [Mobiluncus mulieris FB024-16]
 gi|307613294|gb|EFN92545.1| transcription-repair coupling factor [Mobiluncus mulieris FB024-16]
          Length = 1172

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 73/487 (14%), Positives = 159/487 (32%), Gaps = 64/487 (13%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +++ P+   A +L  +   +     VE F  + +    E   PRTDT   +       +
Sbjct: 41  TVILTPSGRGAEELARDLSCWT--RGVEVFPDW-ETLPHERLSPRTDTMARRI----WAL 93

Query: 256 DRMRHS------ATRSLLER--NDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS---VE 304
            R+ H        T S +        +   V  +    +  +   +   L          
Sbjct: 94  HRLTHPEAFGTEGTNSEVGESTEHNPIKFLVVPMRAALAPVNTKILSYPLFKAQVGKAYG 153

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + E+   L    Y+R ++ + RG + + G  +++F + +     R+ +FG++I+ I  F 
Sbjct: 154 RDEMSRDLAALGYERTELVVTRGQYSLRGGIVDVFSA-VSPHPVRIELFGDEIDSIRPFA 212

Query: 365 PLTGQKI-RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
               +   +  +++   A   ++        A       L  +L +  +   L       
Sbjct: 213 VSDQRTFNQEFQSVTAPACREFLLDETARVHA-----ASLAAQLPQAAEILNLAA----- 262

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
                           + +E+    L     G     LFE +P  + L   +    +P++
Sbjct: 263 -----------QGIYSEGLESLGALL-----GAEMKPLFELLPPGARLVATD----LPRL 302

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
                      A      +   +     PL     + L    + VS      +  +    
Sbjct: 303 EARAVELGETTAEFLAASWSAAADGSEIPLEINTASFLDLDALRVSEAKAGMKTLRISPF 362

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
              +    +G    P+           +   I   A++   +++   +  M + L   L 
Sbjct: 363 ATHESATTSGAETVPL---PTTGATG-IISTIRERAREHWTVVIAATSNGMVQRLHRLLA 418

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           E +I  + + +++            R GK  V V    + EG  + E  L+ I +A+  G
Sbjct: 419 ENDIPAQ-VSADLDAEPE-------RSGKTWVTVAP--ITEGFALAEAKLLVISEAEALG 468

Query: 664 FLRSKTS 670
             +++  
Sbjct: 469 KRQARHH 475



 Score = 43.5 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 13/150 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVEDVYDE-----INLA 578
            + +SATP    LE          IR    +  P E R    T V    D      I   
Sbjct: 776 VLAMSATPIPRTLEMAITG-----IRGLSTLTTPPEERHPVLTYVGAYSDRQVAAAIRRE 830

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVL 636
             +  ++       +    + ++L       R    H ++   +  +++ D    +FDVL
Sbjct: 831 MLRDGQVFYVHNRVQDIARVAKHLQSLVPEARIRVGHGQMPETQLEQVMMDFWNQEFDVL 890

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLR 666
           V   ++  GLD+     + I  A++ G  +
Sbjct: 891 VSTTIVENGLDVTNANTIIIDRAERMGLSQ 920


>gi|227876324|ref|ZP_03994437.1| possible transcription-repair coupling factor [Mobiluncus mulieris
           ATCC 35243]
 gi|306817215|ref|ZP_07450962.1| transcription-repair coupling factor [Mobiluncus mulieris ATCC
           35239]
 gi|227843097|gb|EEJ53293.1| possible transcription-repair coupling factor [Mobiluncus mulieris
           ATCC 35243]
 gi|304650017|gb|EFM47295.1| transcription-repair coupling factor [Mobiluncus mulieris ATCC
           35239]
          Length = 1172

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 73/487 (14%), Positives = 159/487 (32%), Gaps = 64/487 (13%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +++ P+   A +L  +   +     VE F  + +    E   PRTDT   +       +
Sbjct: 41  TVILTPSGRGAEELARDLSCWT--RGVEVFPDW-ETLPHERLSPRTDTMARRI----WAL 93

Query: 256 DRMRHS------ATRSLLER--NDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS---VE 304
            R+ H        T S +        +   V  +    +  +   +   L          
Sbjct: 94  HRLTHPEAFGTEGTNSEVGESAEHNPIKFLVVPMRAALAPVNTKILSYPLFKAQVGKAYG 153

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
           + E+   L    Y+R ++ + RG + + G  +++F + +     R+ +FG++I+ I  F 
Sbjct: 154 RDEMSRDLAALGYERTELVVTRGQYSLRGGIVDVFSA-VSPHPVRIELFGDEIDSIRPFA 212

Query: 365 PLTGQKI-RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
               +   +  +++   A   ++        A       L  +L +  +   L       
Sbjct: 213 VSDQRTFNQEFQSVTAPACREFLLDETARVHA-----ASLAAQLPQAAEILNLAA----- 262

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
                           + +E+    L     G     LFE +P  + L   +    +P++
Sbjct: 263 -----------QGIYSEGLESLGALL-----GAEMKPLFELLPPGARLVATD----LPRL 302

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
                      A      +   +     PL     + L    + VS      +  +    
Sbjct: 303 EARAVELGETTAEFLAASWSAAADGSEIPLEINTASFLDLDALRVSEAKAGMKTLRISPF 362

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
              +    +G    P+           +   I   A++   +++   +  M + L   L 
Sbjct: 363 ATHESATTSGAETVPL---PTTGATG-IISTIRERAREHWTVVIAATSNGMVQRLHRLLA 418

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           E +I  + + +++            R GK  V V    + EG  + E  L+ I +A+  G
Sbjct: 419 ENDIPAQ-VSADLDAEPE-------RSGKTWVTVAP--ITEGFALAEAKLLVISEAEALG 468

Query: 664 FLRSKTS 670
             +++  
Sbjct: 469 KRQARHH 475



 Score = 43.5 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 13/150 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVEDVYDE-----INLA 578
            + +SATP    LE          IR    +  P E R    T V    D      I   
Sbjct: 776 VLAMSATPIPRTLEMAITG-----IRGLSTLTTPPEERHPVLTYVGAYSDRQVAAAIRRE 830

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVL 636
             +  ++       +    + ++L       R    H ++   +  +++ D    +FDVL
Sbjct: 831 MLRDGQVFYVHNRVQDIARVAKHLQSLVPEARIRVGHGQMPETQLEQVMMDFWNQEFDVL 890

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLR 666
           V   ++  GLD+     + I  A++ G  +
Sbjct: 891 VSTTIVENGLDVTNANTIIIDRAERMGLSQ 920


>gi|308176608|ref|YP_003916014.1| transcription-repair-coupling factor [Arthrobacter arilaitensis
           Re117]
 gi|307744071|emb|CBT75043.1| transcription-repair-coupling factor [Arthrobacter arilaitensis
           Re117]
          Length = 1204

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 79/507 (15%), Positives = 157/507 (30%), Gaps = 63/507 (12%)

Query: 182 TFTMAKVIEAMQRP--AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239
           +  +++ +   + P   +++      A ++ +    + P   +  F S+ +    E   P
Sbjct: 47  SAHISQALGESKNPGVTLIVTATGREAEEISTSLGAYLPAEQIAEFPSW-ETLPHERLSP 105

Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
           R+DT   +   +    D  R  A   ++     ++   V+ +  +  V        +L++
Sbjct: 106 RSDTVGRRLEVLRRLHD--RDQALNIIIAPIRAVLQPLVAGLGQLRPV--------RLEL 155

Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359
            D      ++  L    Y R D+   RG F V G  I++FP  L D   R+  FG+ I+ 
Sbjct: 156 DDEPGFDAVIKDLAAAAYARVDMVTHRGEFAVRGGIIDVFPPTL-DHPVRIDFFGDQIDS 214

Query: 360 ISEFYPLTGQKIRNV--ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           +  F     +       + I        +     ++ A                 +    
Sbjct: 215 MRYFSIADQRSTAEDGPQRIIATPCREMLITPKVMSRAANL--------------KNHFP 260

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES- 476
            AQ +  +I           + + +E+ +  L  +        L   +PE S+  V E  
Sbjct: 261 AAQEMLTKIA-------GGIAVEGMESLAPLLVDQMVP-----LLSLLPECSIALVMEPE 308

Query: 477 --HVTIPQISGMYRGDFHRKATLAEYGFRLP----SCMDNRPLRFEEWNCLRPTTIVVSA 530
                   ++             A  G   P    +    R L   ++  L  T      
Sbjct: 309 RVRARAHDLNATNAEFLAAAWASASDGASAPLDLNTADSERKLASGDFASLAETVQHAHQ 368

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
              SW      G   E  +  + +  P  E    +  +E + + I    +   R ++   
Sbjct: 369 AKVSWWALTSMGADEELELGSSTIRIPAREPLGYQGDIEAMMEFIAGRVKDQWRFVVATE 428

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
               A  L+E   +  I    +     T            G  ++         G    E
Sbjct: 429 GPGPAARLSELFADFKIPAHRVEDISATPT---------AGLIEITQATA--GRGFVFEE 477

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGR 677
             L  + +AD  G   +  +     GR
Sbjct: 478 LKLGLLTEADLLGRSSAYPN---RKGR 501



 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 52/149 (34%), Gaps = 11/149 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     T    PP E     T V     + +   I    
Sbjct: 799 VLAMSATPIPRTLEMSLTGIRETSTLAT----PPEERHPVLTYVGPRSDKQISAAIKREL 854

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E +   L E     R    H ++       II+D    KFDVLV
Sbjct: 855 MRDGQVFFVHNRVSSIERVAAELRELAPEARIEVAHGKMSESRLERIIQDFWEKKFDVLV 914

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLR 666
              ++  GLDI     + +  A+  G  +
Sbjct: 915 STTIIETGLDISNANTLIVDRANNYGLSQ 943


>gi|409879|gb|AAD12393.1| Homology to uvrB excision repair gene X03678 [Mycoplasma
           genitalium]
          Length = 130

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/126 (32%), Positives = 61/126 (48%)

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLK 298
           P    YIEK +++NE I R+R S   SL  R D IVV SV+ IY   S   + +  +   
Sbjct: 5   PDKGIYIEKSATVNEAIKRLRVSTLHSLSTRKDVIVVGSVASIYPTSSPSDFVKYCLWFV 64

Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358
           +G   + K +   LV   Y      +  G FR  GD +E+FP + +    R+S F   +E
Sbjct: 65  VGKDYDLKTIKDRLVSLNYVVNKQQLTPGKFRFQGDVLEVFPGYSDAFVIRISFFDTKVE 124

Query: 359 EISEFY 364
           +I +  
Sbjct: 125 QICQID 130


>gi|240950267|ref|ZP_04754546.1| transcription-repair coupling factor [Actinobacillus minor NM305]
 gi|240295244|gb|EER46045.1| transcription-repair coupling factor [Actinobacillus minor NM305]
          Length = 1150

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/320 (16%), Positives = 117/320 (36%), Gaps = 38/320 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +  Q L  + G   T  + +  +  Q   +V+ P+   A +L           ++  F  
Sbjct: 17  QDHQTLGNLIGHSDTLAIVQASQQFQGLTVVVTPDTRTALRL---------EKSLPSFTK 67

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-NDCIVVSSVSCIYGIGS 286
                 P    P  +T      S ++ I   R SA   L +      ++   + +  +  
Sbjct: 68  L-----PVQLFPDWETLPYDNFSPHQDIISARLSALFQLQQGQKQIFLLPINTLLQKVCP 122

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
               +  ++ +K GD    ++L   L    Y+  +  +  G + V G  ++++P    D 
Sbjct: 123 PSYLANNVLLIKKGDRFSIEKLRLQLENAGYRAVEQVLEYGEYAVRGALLDLYPM-GADS 181

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ I  F     + I  ++ I +     +    PT +  ++Y + + + +
Sbjct: 182 PYRLDFFDDEIDTIRTFDVDNQRTIEQIDEINLLPAHEF----PTDSNGIEYFRGKFREQ 237

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             E+ +     E + + Q+++              IE +          E   +LFEY+P
Sbjct: 238 FGEIRR-----EPEHIYQQVSK-------GILNAGIEYWQPLFF-----EQMASLFEYLP 280

Query: 467 EDS-LLFVDESHVTIPQISG 485
           E +  +   +      Q   
Sbjct: 281 EQTLFITFADIQQKAEQFQQ 300



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R +   V  + + I     +
Sbjct: 757 ILTLTATPIPRTLNMALNGMRDLSIIASPPARRLSIKTFVRQSDDTV--IKEAILREILR 814

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+  + L E     R +  H +++  E   ++ D    +F++LV  
Sbjct: 815 GGQVYYLHNDVATIENTAQQLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCS 874

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 875 TIIETGIDVPTANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYMLTPPPKTLTK 930


>gi|146329097|ref|YP_001209598.1| transcription-repair coupling factor [Dichelobacter nodosus
           VCS1703A]
 gi|146232567|gb|ABQ13545.1| transcription-repair coupling factor [Dichelobacter nodosus
           VCS1703A]
          Length = 1117

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 103/314 (32%), Gaps = 40/314 (12%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVE---YFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +++AP+ + A  LY     +  ++A +   Y+ S ++    + Y P  D   E       
Sbjct: 31  LIVAPDAVWAQYLYDNLMFWLKNSAWQQTLYYFSDWETLPYDHYTPHPDLVSE------- 83

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
                R      L      IV++S S     +       +  +   +GD + QK +++ L
Sbjct: 84  -----RIRVLAELPTLTQGIVITSTSAFRQRLCPQTHLDKFGIHCAVGDHIAQKTVINRL 138

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           ++  Y+       +G +   G+ +++FP        R+    ++I+ I  F   T   ++
Sbjct: 139 LQAGYQSTHFISEKGEYATRGNIVDLFPM-AAQTPIRLEWLDDEIDSIRFFDLKTQLTLK 197

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
             + + I                                +  R    + + Q   Y  + 
Sbjct: 198 KCQQLSILPARELDLSDAGRVC---------------FRQSARQYFGEHIHQSGIY--QS 240

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF-VDESHVTIPQISGMYRGDF 491
           L    + Q +E Y               L +Y P ++     DE  V++          +
Sbjct: 241 LSEGRTPQGLEYYLPLFFDETAH-----LLDYFPSNTCYIPADELAVSLQNHDDYCHKRY 295

Query: 492 HRKATLAEYGFRLP 505
            R   L E     P
Sbjct: 296 QRLNHLRENSLLAP 309



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 13/185 (7%)

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQGLRI 585
           ++ATP    L      + +  I  T        I++  +Q + +   +       +G +I
Sbjct: 720 LTATPIPRTLNLALSGLRDLSIIAT-APAGRQSIQTIISQYDPIVIEEACERELNRGGQI 778

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
                     + +   L E+  + R    H +++     +I++D     +D+LV   ++ 
Sbjct: 779 YFLHNDVSSIDRIARALSEQLPQARIAVAHGQLRERALEKIMQDFYNRHYDLLVASTIIE 838

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            G+DIP    + I  ADK G  +    L Q  GR  R+ +     YA  IT + Q  +++
Sbjct: 839 SGIDIPNANTIIINRADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLITPAWQ-TLNK 890

Query: 704 TTRRR 708
             +RR
Sbjct: 891 DAQRR 895


>gi|315022463|gb|EFT35490.1| transcription-repair coupling factor [Riemerella anatipestifer
           RA-YM]
          Length = 1096

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/386 (13%), Positives = 129/386 (33%), Gaps = 54/386 (13%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
            +   + G+ GS  +   A++     +P +++  +K  A    +E +     + V YF  
Sbjct: 7   HQHISVKGMAGSSPSLICAELFLTQNQPILLIVDDKEDAHYTTTELEELLGEDKVLYF-- 64

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS--VSCIYGIG 285
                      P T     +          +R      L    +  V+ +   +    + 
Sbjct: 65  -----------PATHLEPYQTEKTQNANLVLRTEVLNQLNANPEPKVIVAHYAALCEKVL 113

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
             E +  +   +K+G  ++       L +  +   D     G F V G  +++F S+  D
Sbjct: 114 KKEDFKAISHHIKVGYQLDFDFTGELLEQFNFHLTDFVSEPGEFAVRGGIVDVF-SYAND 172

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR---------------- 389
             +R++ FGN++E I  F   T   I  VE++++ +N ++                    
Sbjct: 173 KPYRITFFGNEVESIKTFDIETQLSISKVESLQLVSNMNFAVQGTKVPFLDLLPKDSFIV 232

Query: 390 -PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN---- 444
                  + YI++       +  +    ++ Q+  +    D    +T    ++++     
Sbjct: 233 TKNAYLGLNYIRDFYTKAEEKYTQLNSDIKHQKPNELFISDEVFFKTYQKFRTVDFTSQS 292

Query: 445 ----YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
                + ++  +   +P         ++  L +++      Q   ++      K      
Sbjct: 293 LQLPQAPFIELKQNPQPS------FNKNFELLIEDLEEKQKQGFNLWISFSSEKQK---- 342

Query: 501 GFRLPSCMDNR--PLRFEEWNCLRPT 524
             RL S  ++    + F+ +      
Sbjct: 343 -ERLKSIFEDLGSAISFQFFKSELHQ 367



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +  +I+       PVE +      E + D I+   Q+  
Sbjct: 685 TLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVETQLIGFDEEIIRDAISYELQRDG 744

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +D+   +       R +  H ++   +  E I D   G++DVLV   +
Sbjct: 745 QVYFINNRIDNLKDIAGMIQRLVPDARVITGHGQMDGKQLEENILDFMEGRYDVLVSTTI 804

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I DA + G       + Q  GR  R+ N K   Y  T    +   +
Sbjct: 805 VESGVDVPNANTIFINDAQRFG----MADVHQMRGRVGRS-NRKAFCYLITPPFDM---V 856

Query: 702 DETTRRREKQLE 713
               R+R + +E
Sbjct: 857 TSDARKRLEAIE 868


>gi|260427548|ref|ZP_05781527.1| transcription-repair coupling factor [Citreicella sp. SE45]
 gi|260422040|gb|EEX15291.1| transcription-repair coupling factor [Citreicella sp. SE45]
          Length = 1160

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 102/330 (30%), Gaps = 45/330 (13%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G         +         P I +A +    A +      F P   V  F         
Sbjct: 12  GAPEGFDARLVLAEAAKAGGPVIHIARDDKRMAAMAEALAFFAPDMPVVRF--------- 62

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER---NDCIVVSSVSCIYGIGSVESYS 291
               P  D       S N  I   R +    L+        ++ +  +    I + E   
Sbjct: 63  ----PAWDCLPYDRVSPNPDISAARMATLAGLVHGMPSGFVLLTTLSAATQYIPAREILR 118

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           +     ++G  V++  L   LV+  + +       G + + G  I+I+P   +    R+ 
Sbjct: 119 EAAFSARVGSRVDEAALRGFLVRMGFSQAPTVTEPGDYAIRGGIIDIYPP-GDGGPVRLD 177

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELE 411
           +FG+ ++    F P++ +    ++ +++   S  +    ++    +  + E         
Sbjct: 178 LFGDVLDGARRFDPVSQRTTEKLDLVELAPVSEVILDEASILRFRQNYRVE-------FG 230

Query: 412 KEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL 471
             G                E +      Q +E++  +   R       TLF+Y+P  + +
Sbjct: 231 AGGAD----------DPLYEAVSAGRKQQGMEHWLPFFHDRLE-----TLFDYLP-GAPV 274

Query: 472 FVDE-----SHVTIPQISGMYRGDFHRKAT 496
            +D+            I   Y    H    
Sbjct: 275 MMDDQLTPARLARWESIEDQYDTRRHAMTQ 304



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 12/188 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 755 HVLTLTATPIPRTLQLSLSGVRDLSIIGTPPVDRL-SIRTYVSEFDPVTIREALLREHYR 813

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ E+L E+   V Y+  H ++   E  E +     GK+DVL+  
Sbjct: 814 GGQSFYVVPRISDLPEIEEFLREQVPEVSYVVAHGQMAAGELDEKMNAFYDGKYDVLLAT 873

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK   YA   TK    
Sbjct: 874 TIVESGLDIPTANTMVVHRADMFGLSQ----LYQIRGRVGR---SKTRAYAYMTTKPRAK 926

Query: 700 AIDETTRR 707
             D   +R
Sbjct: 927 LTDTAEKR 934


>gi|110679958|ref|YP_682965.1| transcription-repair coupling factor [Roseobacter denitrificans OCh
           114]
 gi|109456074|gb|ABG32279.1| transcription-repair coupling factor [Roseobacter denitrificans OCh
           114]
          Length = 1154

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 100/309 (32%), Gaps = 39/309 (12%)

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
              + GV        +   +     P + +A +    A L +  +   P   V  F    
Sbjct: 6   HITISGVPEGYDARVLLDEVAKSSAPVMHIARDDKRLAALQAALRFMAPDMPVVVF---- 61

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER---NDCIVVSSVSCIYGIGS 286
                    P  D       S N  I   R +   +L+        ++ +  +    I +
Sbjct: 62  ---------PGWDCLPYDRISPNADISAQRMATLAALIHGMPERFILLTTLNAASQKIPA 112

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            +         ++G  +++K L + LV+  + +       G + V G  I+IFP   +  
Sbjct: 113 RDLLKDAAFSARVGSRIDEKALRNFLVRMGFVQSPTVTEPGDYAVRGGIIDIFPP-GDMG 171

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
             R+ +FG+ ++    F   T +    ++ +++   S  +     +    +  + E    
Sbjct: 172 PVRLDLFGDVLDGARRFDSATQRTTEKLDLVELAPVSEIILDEAAITRFRQNYRIE---- 227

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
                  G                E +      Q  E++  +           TLF+Y+P
Sbjct: 228 ---FGAAGTD----------DPLYEAISAGRKHQGAEHWLPFFHDGLE-----TLFDYLP 269

Query: 467 EDSLLFVDE 475
           + S+   D+
Sbjct: 270 QASVSLDDQ 278



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 72/187 (38%), Gaps = 9/187 (4%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 746 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA-IRTYVSEFDTVTLREALLREHYR 804

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++  +L E+   + Y+  H ++   E  + +     GKFD+L+  
Sbjct: 805 GGQSFYVVPRISDLPEIEAFLTEQLPELTYVVAHGQMAAGELDDRMNAFYDGKFDILLAT 864

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+               +  
Sbjct: 865 TIVESGLDIPTANTMIVHRADMFGLAQ----LYQIRGRVGRSKTRAYAYLTTKPRARLTA 920

Query: 700 AIDETTR 706
             ++  R
Sbjct: 921 TAEKRLR 927


>gi|148653434|ref|YP_001280527.1| transcription-repair coupling factor [Psychrobacter sp. PRwf-1]
 gi|148572518|gb|ABQ94577.1| transcription-repair coupling factor [Psychrobacter sp. PRwf-1]
          Length = 1271

 Score =  117 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 102/335 (30%), Gaps = 51/335 (15%)

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           V     R  +V+  ++    Q+ +E         V                P  +T    
Sbjct: 81  VANVANRLKVVVTKDQNQLNQIETELAFCGVDAYV---------------FPDWETLTYD 125

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           E S ++ I   R +    +  +   +++S  + +  +            L +GD  +  +
Sbjct: 126 ELSPHQDIVSERINLLTDM-PKQGILLISIQTLMQRMAPPSWLIGQHFDLSVGDIFDINQ 184

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
               L    Y+  D     G F V G  I+IF +  +    R+ +F N+IE I  F P T
Sbjct: 185 QREMLAAAGYRAVDNVFEPGEFAVRGSVIDIF-AMGQPFPLRLDLFDNEIETIRFFNPQT 243

Query: 368 GQKI-------------------------RNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            + +                          ++  +    +      +  +  A ++  +E
Sbjct: 244 QRTLSTQTLMDLVAGRADANSANQHDLTVESLSLLHKLPDVSKPITQFQILPAKEFPLDE 303

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
            K       +         +  R     + +    +   +E Y               LF
Sbjct: 304 GKET----FRNNFAAMFPNVSSRRFELHKDVMAGIASSGLEYYQPLFFEIEDWSQNGHLF 359

Query: 463 EYIPEDSLLFVDESHVT-----IPQISGMYRGDFH 492
            Y P+D+L  +DE+          QI   Y    H
Sbjct: 360 SYFPKDTLFIIDENTAEAQADYWSQIQRRYEERRH 394



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 67/179 (37%), Gaps = 11/179 (6%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            ++ ++ATP    L      + +  I    P   +     +     Q+  + + I     +
Sbjct: 868  SLSMTATPIPRTLNMALTGMRDMSIIATPPARRLSIKTFVMQKTNQL--MKEAILRELLR 925

Query: 582  GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G ++ L        E + E + E     R    H ++      ++++     KF+VLV  
Sbjct: 926  GGQVYLLHNDVASIERMAENIRELVPEARVGVAHGQMNERGLEQVMQQFYHKKFNVLVCT 985

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K ++
Sbjct: 986  TIIETGIDVPNANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYCYLLVPSVKGLK 1040


>gi|67458759|ref|YP_246383.1| transcription-repair coupling factor [Rickettsia felis URRWXCal2]
 gi|75536784|sp|Q4UMJ0|MFD_RICFE RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|67004292|gb|AAY61218.1| Transcription-repair coupling factor [Rickettsia felis URRWXCal2]
          Length = 1142

 Score =  117 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 121/372 (32%), Gaps = 55/372 (14%)

Query: 179 SGKTFTM-AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           + K+F       + +++  I+ + N+  A QLY +   F  +  + YF            
Sbjct: 9   TAKSFFATHNFTKNLKQDFILSSSNEDEALQLYKQALFFSSNENIYYF------------ 56

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERN---DCIVVSSVSCIYGIGSVESYSQMI 294
            P  DT     +S N  I   R      L   N     ++  + + +  +   + +S+  
Sbjct: 57  -PSYDTIPYDHTSPNANILSRRAEILTKLTTNNSNGKLLITYAANLLNKLPPKDFFSKYF 115

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           ++L         EL   LV+  + R    I  G F V G+ I+I        A+R++   
Sbjct: 116 LKLSPKMKFTTDELAMFLVENSFTRNASSIDVGEFAVRGEIIDIILPG--PKAYRINFSW 173

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           + IE I EF   T    ++   + I   +  V    T                  L   G
Sbjct: 174 DYIESIKEFDIDTQISTKSCSELVISPANEIVLNSETNGNFKNN----------YLRNFG 223

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  L        E + +       E                +L +Y+ +   +F +
Sbjct: 224 VNHTDNPL-------YEAVISGRKFAGYEQLLPLFYNSC-----SSLVDYLNDPIFIFDN 271

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN-CLRPTTIVVSATPG 533
            S   I +    Y   +              +  +   L+F  +   L PT +  +A+  
Sbjct: 272 LSKQAILEFEHSYNDFYS-------------ARSEVNKLKFNSFYPTLSPTDLYFTASEI 318

Query: 534 SWELEQCQGIIV 545
           +  LEQ   I +
Sbjct: 319 TELLEQKNNIFI 330



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  T  ++   E+R+     + V   D +     +
Sbjct: 731 HVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRL-EVRTMVMPFDPVIIRDALLREHFR 789

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G R    V   +  ED+ + L +    + Y   H ++   +  E++ +   GKFD+LV  
Sbjct: 790 GGRSFYVVPRIKDIEDIEKQLKQIVPELSYKIAHGKMTPSKIDEVMSEFYAGKFDILVST 849

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI E   + I  AD  G  +    L Q  GR  R    KV  YA     S + 
Sbjct: 850 TIIESGIDIAEANTMVIHKADMLGLSQ----LYQLRGRIGR---GKVRGYAYLTVASHKK 902

Query: 700 AIDETTRRREK 710
               + RR E 
Sbjct: 903 MTSHSLRRLEI 913


>gi|149376584|ref|ZP_01894344.1| transcription-repair coupling protein Mfd [Marinobacter algicola
           DG893]
 gi|149359102|gb|EDM47566.1| transcription-repair coupling protein Mfd [Marinobacter algicola
           DG893]
          Length = 1038

 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 59/341 (17%), Positives = 118/341 (34%), Gaps = 49/341 (14%)

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           + + + ++ +  V       + L++G S++       L    Y+  D     G + V G 
Sbjct: 1   MPARTLMHRLPPVSYLQGNTLLLEVGQSLDIDNWRMQLESAGYRHADNVYEHGEYAVRGA 60

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++IFP       +R+ +F ++IE +  F P T + I  +E I++   + +   +   + 
Sbjct: 61  ILDIFPM-GATRPYRIDLFDDEIETLRTFDPETQRSIDRIERIELLPANEFPWHKEARSG 119

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
                      R    E+     +   + Q +T+ +       +   IE Y         
Sbjct: 120 F----------RNRWFEQFPHADKDAPIYQDVTHSI-------TPPGIEYYLPLFF---- 158

Query: 455 GEPPPTLFEYIPEDSLLFV-----DESHVTIPQISGMYRGDFH-RKATLAEYGFRLPSCM 508
            E   TLF+Y+P ++L+F      D +          Y    H R          LP   
Sbjct: 159 -EQTATLFDYLPGETLVFTASGLNDAASAFDADTRARYEDRRHDRMRP------ILPPA- 210

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
           +    + E +  L+    V   T  +   E   G   +  + P   +D          + 
Sbjct: 211 ELFLQKDELFGLLKGLPRVTMTTEAT---ESSGGRNCQTDVMPDVAMD---------GRA 258

Query: 569 EDVYDEINLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIR 608
            D    +     +   R+L+   +    E L E L +  ++
Sbjct: 259 ADPAGRLKRFISEFNGRVLICAESSGRREALIENLADHGLK 299



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 13/179 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L    G + +  I  T      + +++   Q ++    + I     +G
Sbjct: 645 MLNLTATPIPRTLNMAMGHLRDLSIIAT-PPARRLSVKTFVRQRDEAMVKEAILREVLRG 703

Query: 583 LRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++      V T  + AEDL + + E  + V   H +++  E  +I+ D    +F+VLV 
Sbjct: 704 GQVYFLHNDVATIEKTAEDLRQLIPEARVGVA--HGQMRERELEQIMSDFYHKRFNVLVC 761

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +           +SI
Sbjct: 762 TTIIETGIDIPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPRSI 816



 Score = 45.9 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 4/127 (3%)

Query: 101 PSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQL 160
              +AL ++  +   LL         + ++  +  +    F     +  + DQ AAI  +
Sbjct: 447 AKQKALEKIRDTAAELLDVYARREARKGFAFEDPKEAYRAFAAGFPFEETPDQQAAIEAV 506

Query: 161 LKG-IHSREKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            +  +  +   +L+ G  G GKT      A +     +   V+ P  +LA Q Y  F++ 
Sbjct: 507 FEDMVSEKPMDRLVCGDVGFGKTEVAMRAAFMATYSGKQVAVLVPTTLLAQQHYESFRDR 566

Query: 217 FPHNAVE 223
           F   AV 
Sbjct: 567 FSETAVH 573


>gi|260577719|ref|ZP_05845654.1| transcription-repair coupling factor [Corynebacterium jeikeium ATCC
           43734]
 gi|258604114|gb|EEW17356.1| transcription-repair coupling factor [Corynebacterium jeikeium ATCC
           43734]
          Length = 1243

 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 77/483 (15%), Positives = 151/483 (31%), Gaps = 84/483 (17%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+      A  L +  +       VE F S+ +    E   P  +T           
Sbjct: 67  PLLVVTATGRQAQDLTTVLRYMLGDR-VELFPSW-ETLPHEKLSPAVETVST-------- 116

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ--LKIGDSVEQKELLSSL 312
               R    R L E ++ + V        +  V+S    +    LK+G+ ++   L   L
Sbjct: 117 ----RMRVLRRLHEGDENLQVVVAPTRAAVQPVQSNLGEVTPVRLKVGEEIDFDSLTHRL 172

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
            +  Y   D+   RG F + G  ++IFP+  E++  RV  +G++I E+  F     + I 
Sbjct: 173 QELGYTHVDVVGKRGHFAIRGGIVDIFPA-TEEMPVRVDFWGDEITEVRAFSVGDQRTIP 231

Query: 373 NV--ETIKIYANSHYVTPRPTLNTAMKYIKE-----ELKMRLIELEKEGRLLEAQRLEQR 425
            V  + + +YA    +      + A    +E     EL   L +                
Sbjct: 232 GVEPDQVMVYACRELIVTDEVASKAKNLAQEHAGNAELAEILDK---------------- 275

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
                  +      Q +E+    L        P    E +PE +   V        +   
Sbjct: 276 -------ISQKIQVQGMESLIPALHTAELVALP----ELMPEGTHTLVMAPAAVERRAHD 324

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRF---------EEWNCLRPTTIVVSATPGSWE 536
           +            E G+ + +   + P+           ++            +T G  +
Sbjct: 325 L----RETGQQFLEAGWDVAAMGGSAPMEGVAYLSIDAVQKVQQKLGRPWWTLSTLGMAD 380

Query: 537 LEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
            +     ++E       RP G ++           +  +  +I    + G R+     T 
Sbjct: 381 FDADTSDVLELNYDSAPRPHGEMEA----------IGALMSDIRKRVESGGRVAFAAPTP 430

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVK------TLERIEIIRDLRLGKFDVLVGINLLREGL 646
            +A  +     E  I    +  ++        +++ +           V +   +  EGL
Sbjct: 431 AVAARMLRRFQEAGIAAEAIGVDLSGSRGLGRIKKSKHTTADEPAPHQVSIYHAVAYEGL 490

Query: 647 DIP 649
             P
Sbjct: 491 VFP 493



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 70/202 (34%), Gaps = 19/202 (9%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
             + +SATP    LE     I E     + ++ PP +     T V   ED +    +  + 
Sbjct: 820  VLTMSATPIPRTLEMSMAGIREM----STILTPPEDRHPVLTYVGAQEDKHVAAAIRREL 875

Query: 581  -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
             +  ++       R  E     +       R +  H ++   +    ++     +FDVLV
Sbjct: 876  LRDGQVFYVHNKVRSIEQTAADIRRLVPEARVVVAHGQMSEEQLETTVKGFWDREFDVLV 935

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  GLDI     + + +A   G  +    L Q  GR  R+       +     +  
Sbjct: 936  CTTIVETGLDIANANTLIVENAHHMGLSQ----LHQLRGRVGRSRERGYAYFLYPKGE-- 989

Query: 698  QLAIDETTRRREKQLEHNKKHN 719
               + ET+  R   +  N    
Sbjct: 990  --VLTETSYDRLTTIAQNNDLG 1009


>gi|227873322|ref|ZP_03991584.1| transcription-repair coupling factor [Oribacterium sinus F0268]
 gi|227840837|gb|EEJ51205.1| transcription-repair coupling factor [Oribacterium sinus F0268]
          Length = 1138

 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 90/533 (16%), Positives = 178/533 (33%), Gaps = 110/533 (20%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            L + +  +E    + G++ S K+              + +   +  A ++  + K  F 
Sbjct: 27  ALTEALEKKE-PLFVEGISDSLKSLLALGFRGKW---ILYLCKTEERAKEILQDGK-IFA 81

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
            N + +              P  D    K  +    I R R    R L+E  + ++V+++
Sbjct: 82  ENCLLF--------------PAKDYLFYKADTRGNYISRERSECLRQLVEEEEGMLVTTL 127

Query: 279 SCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             +   +    ++ Q +  +++G ++  + L  SL    Y+R D    RG + + G  ++
Sbjct: 128 PAMLEKLEGKNAFRQAVFTVQLGQTLSLESLQDSLHSLGYQRVDQVESRGEYSLRGGILD 187

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           +F + +E+   R+  F                    V++++ ++                
Sbjct: 188 VFSNQMEE-PLRIEFFD-----------------DEVDSLRYFS---------------- 213

Query: 398 YIKEELKMRLIELEKEGRLLEAQR-LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
                              LE+QR LEQ    ++  +   G   S+              
Sbjct: 214 -------------------LESQRSLEQVEEANIYPVSEQGKPSSL-------------- 240

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              +L +Y+P+D L+ VDE    + +   +        +  AE         D RPL   
Sbjct: 241 KAFSLLDYLPKDCLVIVDEPVRVLEEGKRVEEEFIAYFSQRAEAEAN--QEKDQRPLDLF 298

Query: 517 EWNCLRPTT-----IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
               L            S+  G  E  +     ++ I           EI     Q    
Sbjct: 299 SVRTLMEECASRPIFFFSSLGGISEWGEVFENPLKSISVECR------EIPFYGKQFAQF 352

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             ++    ++ +RI L   ++  A  L E L +  +       +  + +R E       G
Sbjct: 353 KGDMEKYKKEKVRISLYSPSQSRASRLAEELRKEGLSAYC--PDRLSEDREEGEDTENAG 410

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
              VL     LR+G  +P+  L+ + + D  G      SL+    R  + V S
Sbjct: 411 SIRVL--PRYLRKGFYLPKEKLLVMTEQDLYG-----QSLVGRKRRKKKQVES 456



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI    I+    +   P++      +   + + I+   ++  
Sbjct: 739 VLTLSATPIPRTLHMSLVGIRDLSILEEAPMDRLPIQTYVMEEEEGTIREAISRELRRNG 798

Query: 584 RILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++       +  ED    L + L E  I   Y H ++   E  EI+     G+ DVLV  
Sbjct: 799 QVYYVHNRVKSIEDTALRLQKLLPEARI--AYAHGQMGEKELEEIMLSFIAGEIDVLVST 856

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + I DADK G  +    L Q  GR  R+  +          KS+  
Sbjct: 857 TIIETGLDIPNANTLIIQDADKMGLSQ----LYQIRGRVGRSNRTSYAFLLYKKGKSLT- 911

Query: 700 AIDETTRRRE 709
             +E+ +R +
Sbjct: 912 --EESEKRLK 919


>gi|313207139|ref|YP_004046316.1| transcription-repair coupling factor [Riemerella anatipestifer DSM
           15868]
 gi|312446455|gb|ADQ82810.1| transcription-repair coupling factor [Riemerella anatipestifer DSM
           15868]
          Length = 1119

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 53/386 (13%), Positives = 129/386 (33%), Gaps = 54/386 (13%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
            +   + G+ GS  +   A++     +P +++  +K  A    +E +     + V YF  
Sbjct: 30  HQHISVKGMAGSSPSLICAELFLTQNQPILLIVDDKEDAHYTTTELEELLGEDKVLYF-- 87

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS--VSCIYGIG 285
                      P T     +          +R      L    +  V+ +   +    + 
Sbjct: 88  -----------PATHLEPYQTEKTQNANLVLRTEVLNQLNANPEPKVIVAHYAALCEKVL 136

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
             E +  +   +K+G  ++       L +  +   D     G F V G  +++F S+  D
Sbjct: 137 KKEDFKAISHHIKVGYQLDFDFTGELLEQFNFHLTDFVSEPGEFAVRGGIVDVF-SYAND 195

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR---------------- 389
             +R++ FGN++E I  F   T   I  VE++++ +N ++                    
Sbjct: 196 KPYRITFFGNEVESIKTFDIETQLSISKVESLQLVSNMNFAVQGTKVPFLDLLPKDSFIV 255

Query: 390 -PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN---- 444
                  + YI++       +  +    ++ Q+  +    D    +T    ++++     
Sbjct: 256 TKNAYLGLNYIRDFYTKAEEKYTQLNPDIKHQKPNELFISDEVFFKTYQKFRTVDFTSQS 315

Query: 445 ----YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
                + ++  +   +P         ++  L +++      Q   ++      K      
Sbjct: 316 LQLPQAPFIELKQNPQPS------FNKNFELLIEDLEEKQKQGFNLWISFSSEKQK---- 365

Query: 501 GFRLPSCMDNR--PLRFEEWNCLRPT 524
             RL S  ++    + F+ +      
Sbjct: 366 -ERLKSIFEDLGSAISFQFFKSELHQ 390



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +  +I+       PVE +      E + D I+   Q+  
Sbjct: 708 TLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVETQLIGFDEEIIRDAISYELQRDG 767

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +D+   +       R +  H ++   +  E I D   G++DVLV   +
Sbjct: 768 QVYFINNRIDNLKDIAGMIQRLVPDARVITGHGQMDGKQLEENILDFMEGRYDVLVSTTI 827

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I DA + G       + Q  GR  R+ N K   Y  T    +   +
Sbjct: 828 VESGVDVPNANTIFINDAQRFG----MADVHQMRGRVGRS-NRKAFCYLITPPFDM---V 879

Query: 702 DETTRRREKQLE 713
               R+R + +E
Sbjct: 880 TSDARKRLEAIE 891


>gi|68536576|ref|YP_251281.1| transcription-repair coupling factor [Corynebacterium jeikeium
           K411]
 gi|68264175|emb|CAI37663.1| transcription-repair coupling factor [Corynebacterium jeikeium
           K411]
          Length = 1258

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 85/224 (37%), Gaps = 24/224 (10%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+      A  L +  +       VE F S+ +    E   P  +T           
Sbjct: 74  PLLVVTATGRQAQDLTTVLRYMLGDR-VELFPSW-ETLPHEKLSPAVETVST-------- 123

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ--LKIGDSVEQKELLSSL 312
               R    R L E ++ + V        +  V+S    +    LK+G+ ++   L   L
Sbjct: 124 ----RMRVLRRLHEGDENLQVVVAPTRAAVQPVQSNLGEVTPVRLKVGEEIDFDSLTHRL 179

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
            +  Y   D+   RG F + G  ++IFP+  E++  RV  +G++I E+  F     + I 
Sbjct: 180 QELGYTHVDVVGKRGHFAIRGGIVDIFPA-TEEMPVRVDFWGDEITEVRAFSVGDQRTIP 238

Query: 373 NV--ETIKIYANSHYVTPRPTLNTAMKYIKE-----ELKMRLIE 409
            V  + + +YA    +      + A    +E     EL   L +
Sbjct: 239 GVEPDQVMVYACRELIVTDEVASKAKNLAQEHAGNAELAEILDK 282



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 70/202 (34%), Gaps = 19/202 (9%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
             + +SATP    LE     I E     + ++ PP +     T V   ED +    +  + 
Sbjct: 827  VLTMSATPIPRTLEMSMAGIREM----STILTPPEDRHPVLTYVGAQEDKHVAAAIRREL 882

Query: 581  -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
             +  ++       R  E     +       R +  H ++   +    ++     +FDVLV
Sbjct: 883  LRDGQVFYVHNKVRSIEQTAADIRRLVPEARVVVAHGQMSEEQLETTVKGFWDREFDVLV 942

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  GLDI     + + +A   G  +    L Q  GR  R+       +     +  
Sbjct: 943  CTTIVETGLDIANANTLIVENAHHMGLSQ----LHQLRGRVGRSRERGYAYFLYPKGE-- 996

Query: 698  QLAIDETTRRREKQLEHNKKHN 719
               + ET+  R   +  N    
Sbjct: 997  --VLTETSYDRLTTIAQNNDLG 1016


>gi|50955304|ref|YP_062592.1| transcription-repair coupling factor [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50951786|gb|AAT89487.1| transcription-repair coupling factor [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 1204

 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 75/532 (14%), Positives = 158/532 (29%), Gaps = 88/532 (16%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +    +V LL G+          +  +   + ++V+      +  + +          V 
Sbjct: 31  LTDGLRVPLLAGL-------LARRAEQGASQASLVITATGRESESVRAALPCVLTGAEVV 83

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
            F ++ +    E   P  +   ++  ++    D      T +       +V S  + +  
Sbjct: 84  EFPAW-ETLPHERLSPSPEIVGKRLVALRRLSDW-----TAAGSATPFVLVASVRAALQP 137

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           I    +    +  +      +   L++  V   Y R D+   RG F V G  +++FP   
Sbjct: 138 IADNLTDYDRVELVAGARGYDLAGLVAHAVDLAYTRVDMVTRRGEFAVRGGILDVFPP-T 196

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            D  +RV  FG+++E+I  F     + +   + ++ +  +   +        A       
Sbjct: 197 ADHPYRVEFFGDEVEQIRAFSVADQRSLPEPIASVGLPPSRELLLSESVRQRAR------ 250

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
                          E Q     ++     +      + +E+ +  L  R        L 
Sbjct: 251 ---------------EMQHEFPNLSSMFAKIAEGIPVEGMESLAPALADRLVP-----LT 290

Query: 463 EYIPEDSLLFVDESHVTIPQ---ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519
            Y+P  + + V        +   ++   R       + A  G   P  +D     F    
Sbjct: 291 HYLPAGAAVAVMSPERVASRAVSLAETNREFLSAAWSAATVGAAAP--IDLAAGDFLTLQ 348

Query: 520 CLRPTTIV--------------------VSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
            LR                           A P   ELE+   I VE    P        
Sbjct: 349 QLRDDVTFSRPGHPNPDHPWWTFSGFQANDALPEERELEEHLQIRVEAAAVPR------- 401

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
                +  V    + +    ++G R+++      + E   + L E  +  R +       
Sbjct: 402 ----FQGNVTGAVEHVAGLLKRGWRVIIVAEGAGLVERAAQVLAEAELPARPLD------ 451

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
                  D   G   ++     +  G ++ E  L  + + +  G      S 
Sbjct: 452 ---AFPADPEPGVASLIRAT--VEHGFELEEAKLALLSEGEFYGRTVGYDSR 498



 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 51/147 (34%), Gaps = 7/147 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + +SATP    LE     I E     T   D    +       E               
Sbjct: 801 ILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTFVGPYSERQVGAAIRRELLREG 860

Query: 585 ILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +  V  +      +A  L E + E  I   Y H ++      +++ D    KFDVLV  
Sbjct: 861 QVFFVHNRVGSITSVAAKLAELVPEARI--AYAHGKMNEHALEQVVVDFWERKFDVLVST 918

Query: 640 NLLREGLDIPECGLVAILDADKEGFLR 666
            ++  GLDI     + I  ADK G  +
Sbjct: 919 TIIETGLDISNANTIIIDRADKYGLSQ 945


>gi|289610846|emb|CBI60165.1| unnamed protein product [Sordaria macrospora]
          Length = 140

 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 10/119 (8%)

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
              +    Q  GR        VILYAD +T S++ AI ET RRREKQ  +N++H I P +
Sbjct: 23  PDDRPRRAQCRGR--------VILYADRMTGSMERAIAETDRRREKQRAYNEEHGITPTT 74

Query: 725 VKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
           +K +I ++I  +   D  T  I  D  +  +     +++++SL KQM  AA NL FE A
Sbjct: 75  IKRQIGDIIADVASRDQVTVEI--DEDRPHMVGHNLRSYIESLEKQMREAAANLEFETA 131


>gi|254469399|ref|ZP_05082804.1| transcription-repair coupling factor [Pseudovibrio sp. JE062]
 gi|211961234|gb|EEA96429.1| transcription-repair coupling factor [Pseudovibrio sp. JE062]
          Length = 1162

 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 66/466 (14%), Positives = 154/466 (33%), Gaps = 62/466 (13%)

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKV---IEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           + +  + +   L  V    + + ++K+   IE        +A +    A L      F P
Sbjct: 3   ESLLKKSENITLASVPDGAEAYVLSKILSEIEEGGLALTYVARDATRMAALTEALGFFAP 62

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
              V    ++ D    +   P       +  ++          A     ++   ++ +  
Sbjct: 63  DVEVLQLPAW-DCLPYDRVSPHGAIVARRLLTLLRL-------AKGLPKKKKFVLITTVN 114

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           + +  +   +  S  I+    G+ +   +++  L    + R       G + V G  I++
Sbjct: 115 AALQRMPVRDWTSNHILSFTPGNRINPDKIIKWLEVNGFARTPTVRETGEYAVRGGIIDL 174

Query: 339 F-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           F P+  E    R+  FG+ +E I  F   + + +   + + +   S  +    T++    
Sbjct: 175 FSPATKE--PVRLDFFGDTLESIRSFDTDSQRTLAQKKGLTLVPMSEIILEPETISRF-- 230

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
                   R   +   G       L Q I+              +E++          E 
Sbjct: 231 --------RRNYVTAFGASGPDDVLYQSIS-------EGRRYAGMEHWLPLFH-----EN 270

Query: 458 PPTLFEYIPEDSLLFVDES--HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             TLF+YI E + + +D +   +   ++  +      R+  L      L S +  +P+  
Sbjct: 271 LATLFDYIGE-TPVVLDANAEDMIKERLEQIEEHFGARQDGLNNK--ALSSGVPYKPIP- 326

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ-------- 567
                  P  I +  T  +  +       +     P G     +++   + +        
Sbjct: 327 -------PVAIYLQETELNTCVADRASAQLSPFAMPPGTGKTAIDMGGRQGRNFAAERAA 379

Query: 568 -----VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
                 + +   ++  A+ G R +L+  ++   E LT+ L +  + 
Sbjct: 380 GDVNIFDALSTHVSALAKDGKRAVLSCWSEGSRERLTQVLSDHGLD 425



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 76/202 (37%), Gaps = 15/202 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--Q 581
             + +SATP    L+     + E  +  T  VD    +RS  +  + +    +L  +  +
Sbjct: 765 HVLTLSATPIPRTLQLALTGVRELSLIATPPVDRLA-VRSFISPFDPMVIRESLLREHYR 823

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +            ++  +L E    V+ +  H ++   E  +I+     GKFDVL+  
Sbjct: 824 GGQSFYVCPRVSDLAEVRAFLEENVPEVKVVSAHGQMPPGELDDIMNAFYEGKFDVLLAT 883

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  +D  G  +    L Q  GR  R+      L+          
Sbjct: 884 TIVESGLDIPNANTLIVHRSDMFGLAQ----LYQIRGRVGRSKTRAYALFTVP----ANK 935

Query: 700 AIDETTRRREK--QLEHNKKHN 719
            +  T  RR K  Q   N    
Sbjct: 936 TLTATAERRLKVLQSLENLGAG 957


>gi|238749649|ref|ZP_04611154.1| Transcription-repair-coupling factor [Yersinia rohdei ATCC 43380]
 gi|238712304|gb|EEQ04517.1| Transcription-repair-coupling factor [Yersinia rohdei ATCC 43380]
          Length = 1148

 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 113/298 (37%), Gaps = 37/298 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE    P +++ P+   A +L  E + F P              +P 
Sbjct: 22  LTGSACAVECAEIIERHNGPVMLITPDMQTALRLRDEIQQFSP--------------RPV 67

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
           + +   +T      S ++ I   R S    L      +++  ++ +   +   E      
Sbjct: 68  STLSDWETLPYDSFSPHQDIISARLSCLYHLPAMERGVIILPINTLMQRVCPHEFLHGHA 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + +K G  + + +L + L +  Y+     +  G F   G  ++++P   ++  +R+  F 
Sbjct: 128 LVMKKGQHLSRDKLRAQLEQAGYRSVSQVMEHGEFATRGALLDLYPMGSDE-PYRIDFFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           +DI+ +  F   + + +  VE I +     +   +    TA++  + + + +        
Sbjct: 187 DDIDSLRVFDVDSQRTLSEVEQINLLPAHEFPIDK----TAIELFRSQWREQFDVRRDA- 241

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
                        +  + +        IE +          +P P LF Y+PE++LL 
Sbjct: 242 ------------EHIYQQVSKGIWPAGIEYWQPLFFS----QPLPALFSYLPENTLLI 283



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREVLR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E  T+ L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 809 GGQVYYLFNDVENIEKATQRLAELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 869 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 922


>gi|190891739|ref|YP_001978281.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
           CIAT 652]
 gi|190697018|gb|ACE91103.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
           CIAT 652]
          Length = 1167

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 79/506 (15%), Positives = 151/506 (29%), Gaps = 96/506 (18%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
               P   +  +    A L        P   V               +P  D       S
Sbjct: 36  RTGEPVAYVMSDGHRMADLEQMLGFVAPDIPVLT-------------LPAWDCLPYDRVS 82

Query: 251 INEQIDRMRHSATRSLLERND-----CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
            +      R +A   L+          ++V++ + +  +   +    +    + G+ +  
Sbjct: 83  PSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQKVAPHDVIESLSFSARPGNQLRM 142

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
            +L   L +  + R       G + V G  +++F    E+   R+  FG+ +E I  F P
Sbjct: 143 DDLAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGSEE-PVRLDFFGDTLESIRSFDP 201

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
            + +      ++ +   S       T++            R   L   G       L   
Sbjct: 202 ASQRTTGQGRSLDLNPMSEVTLTPDTISRF----------RKNYLSAFGATTRDDALYLA 251

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
           ++              +E++  +       E   T+F+Y+     +  D         + 
Sbjct: 252 VS-------EGRRYPGMEHWLPFFY-----EKLDTVFDYL-SGFRVVTD--------HTV 290

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC----- 540
               +   K  L  +  RL S     P +      +   T      PG   L+       
Sbjct: 291 REAAEERSKLVLDYFDARLNSGQ---PAK----GQMAQGTPYKPVAPGQLYLDSKLFAKT 343

Query: 541 ----QGIIVEQIIRPTGLVDPPVEIRSARTQ------------------VEDVYDEINLA 578
                 I V       G     V I + + Q                   + V   I   
Sbjct: 344 LDALGAIRVSPFNEIEGEARRVVNIEARQGQRWARSNAEGGGDAERVNIFDVVVKHIADR 403

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL-RLGKFDVLV 637
              G ++L+T  T+   E L + L E           ++ ++ +E ++DL  LGK +   
Sbjct: 404 RAGGAKVLVTAWTEGSLERLLQVLNEHG---------LEKVKPVEALKDLATLGKGEAAA 454

Query: 638 GINLLREGLDIPECGLVAILDADKEG 663
            +  L  G +  +  LV I + D  G
Sbjct: 455 AVLNLESGFEAGD--LVVIGEQDILG 478



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 100/281 (35%), Gaps = 48/281 (17%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
              + +SATP    L+     + E  +  T  VD       I    + V  + + +     
Sbjct: 773  HVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLV--IRETLMREHY 830

Query: 581  QGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +G +            D+  +L      ++V   H ++   E  +I+     G++DVL+ 
Sbjct: 831  RGGQSFYVCPRLADLADVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLS 890

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              ++  GLD+P    + +  AD  G  +    L Q  GR  R+      L+   + K   
Sbjct: 891  TTIVESGLDVPTANTLIVHRADMFGLAQ----LYQLRGRVGRSKVRAFALFTLPVNK--- 943

Query: 699  LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
              +  T  RR K                  +++ +D +       ++        +L  +
Sbjct: 944  -VLTATADRRLK------------------VLQSLDTLGAGFQLASHDLDIRGAGNLLGE 984

Query: 759  KGKAHLK----SLRKQMHLAADNLNFEEA-ARIR--DEIKR 792
            +   H+K     L +QM         EEA A ++  DEI  
Sbjct: 985  EQSGHIKEVGFELYQQML--------EEAVAEVKGVDEIHD 1017


>gi|158422845|ref|YP_001524137.1| transcription-repair coupling factor [Azorhizobium caulinodans ORS
           571]
 gi|158329734|dbj|BAF87219.1| transcription-repair coupling factor [Azorhizobium caulinodans ORS
           571]
          Length = 1171

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 81/531 (15%), Positives = 164/531 (30%), Gaps = 84/531 (15%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI------EAMQRPAIVMAP-NKILAAQLY 210
             L + + +      L  V    +   +A +       +    P++ +   +    A L 
Sbjct: 5   RSLAEDLKAG-NPLTLSRVPEGMQGLVVADLARSVAAGKDAPWPSLTVVCRDGQRLAALE 63

Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270
                F P   V  F             P  D      +S N  I   R +    L    
Sbjct: 64  RGLAFFAPEIEVLSF-------------PSWDCLPYDRASPNAAITARRMATLARLARVK 110

Query: 271 DCIV----VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
              V     +  + +  + + +  +   +  + G+++  + ++    +  Y R       
Sbjct: 111 GGEVSVLLTTVNATVQRVPARDLLAAQSLSARPGNAIALEGIVEWAERNGYLRTPTVRDT 170

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           G + V G  I+++P  L D   R+  FG+ +E I  F P T +    +  +++   + + 
Sbjct: 171 GEYAVRGGLIDLYPPGL-DAPIRLDFFGDTLESIRAFDPETQRSSGTLHALELVPMAEFQ 229

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
               T+             R+  L + G   +   L        E +        +E++ 
Sbjct: 230 LTTDTMRRF----------RMAYLAEFGANTKGDTL-------YEAVSEGRRHAGMEHWL 272

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLL----FVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
                        TLF+Y+     +      D +   I QI   Y     RK  LA    
Sbjct: 273 PLFHAGL-----DTLFDYLDRTPFVVEAQVEDAAAERITQIGDYYD---ARKEALASGA- 323

Query: 503 RLPSCM------DNRPLRFEEWNCLRPTT----IVVSATPGSWELEQCQGIIVEQIIRPT 552
             P  +      +   L  +EW           +   ATP     +      VE      
Sbjct: 324 --PGAVYKPLPPERLYLTQDEWRSRLHALPLTRLTPFATPDGGAGKVVDVGGVEGRSFAA 381

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
              DP   +       +     +     +G +++L   ++   E L+  + +  ++    
Sbjct: 382 ERADPEANVF------DAAVTHVRDLQGRGKKVILAGWSEGSRERLSTVMADHGLK---- 431

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             ++  + +   I  +   K    + I  L  G + P+     I + D  G
Sbjct: 432 --DLAPISKFATIDAMPRNK--ATLAIYGLERGFETPD--FAIIGEQDILG 476



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 76/191 (39%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + ++ATP    L+     + E  +  T  VD    +R+  T  + +   + +     +
Sbjct: 771 HVLTLTATPIPRTLQLAMTGVRELSLIATPPVDRLA-VRTFVTPFDPLIVREALLRERYR 829

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ E+L +    ++V   H ++      +I+     G++DVL+  
Sbjct: 830 GGQSFYVVPRIDDLAEVREFLEKSVPEVKVAVAHGQMAAGTLEDIMTAFYDGQYDVLLST 889

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLD+P    + +  AD  G  +    L Q  GR  R       +++   TK I  
Sbjct: 890 TIVESGLDVPNANTLIVHRADMFGLAQ----LYQLRGRVGRAKARAYAIFSVPATKPITA 945

Query: 700 AIDETTRRREK 710
              +  RR + 
Sbjct: 946 ---QAERRLKV 953



 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 5/156 (3%)

Query: 72  TASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQS-DNPLLKNGKIWTPHRSWS 130
                E  ++     +E Q  ++           + + I+     L+K         +  
Sbjct: 544 PVENLELLTRYGSEDTEAQLDKLGGGGWQARKARMKKRIREMAGELIKIAAARQLSEAPR 603

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MA 186
           +   +     F+ +  Y  + DQ AAI+ +L  + S     +L+ G  G GKT      A
Sbjct: 604 LVPAAGLYDEFRARFPYEETDDQEAAISAVLDDLSSGHPMDRLVCGDVGFGKTEVALRAA 663

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
             +    +   V+ P  +LA Q +  F   F    V
Sbjct: 664 FAVALSGKQVAVVVPTTLLARQHFRTFSERFKGLPV 699


>gi|325106020|ref|YP_004275674.1| transcription-repair coupling factor [Pedobacter saltans DSM 12145]
 gi|324974868|gb|ADY53852.1| transcription-repair coupling factor [Pedobacter saltans DSM 12145]
          Length = 1116

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 93/244 (38%), Gaps = 12/244 (4%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +L+K ++  +    L G+ GS   F  A       R  + + P++  A    S+ +N   
Sbjct: 18  ELIKELNLPKSRIHLKGLIGSQDAFVAATSYFLNHRSVVFVLPDREEANFFLSDLEN-LT 76

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
              +  F S Y          R      +  S N  +     +      E    IV    
Sbjct: 77  EKEILLFPSSY----------RKSADFTQVDSSNVLLRAEVLNELSHATEYGKLIVTYPE 126

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           +    +    +  +  +++ I + +    +   L++  ++R D     G F + G  ++I
Sbjct: 127 AVAEKVIDRSALEKNTLEITINNKLSIDFINEFLIEYDFERTDFVYEPGQFSIRGGIVDI 186

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           F S   ++ +R+  FG+ IE I  F   +   +  V+T+ +  N        +  + +++
Sbjct: 187 F-SFSNELPYRIEFFGDHIESIRTFEIESQLSVEQVKTVTVVPNVQSKFLTESNISLLEF 245

Query: 399 IKEE 402
           I ++
Sbjct: 246 IDQD 249



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 78/228 (34%), Gaps = 37/228 (16%)

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL--- 521
             +  LL +DE       +    +       TL      +P     R L F         
Sbjct: 679 FKDLGLLIIDEEQKFGVSVKEKLKQFRANVDTLTLTATPIP-----RTLHFSLMGARDLS 733

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
              T   +  P   EL     +  E++I+     +          QV  +++ +    Q 
Sbjct: 734 IIQTPPPNRQPVDTEL----HVFNEKLIKEAVEFEL-----DREGQVFFIHNRVADLRQL 784

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G  I              + + +  I +   H +++  +  +I+ D   GK+DVLV   +
Sbjct: 785 GGLI-------------QKLVPKARIAIA--HGQLEGDKLEDIMLDFIEGKYDVLVATTI 829

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           +  GLD+P    + I  A   G     + L Q  GR  R+ N K   Y
Sbjct: 830 IEAGLDVPNANTILINHAHMFGL----SDLHQMRGRVGRS-NKKAFCY 872


>gi|182677886|ref|YP_001832032.1| transcription-repair coupling factor [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633769|gb|ACB94543.1| transcription-repair coupling factor [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 1173

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 88/544 (16%), Positives = 169/544 (31%), Gaps = 72/544 (13%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP-------AIVMAPNKILAAQ 208
           A+A+L KG         L  V      F +A +I A  R         + +A +   A  
Sbjct: 7   AVAELAKG-----GSLTLASVADGYDAFCLADLIHACARAGEERSVVLVHVARDSTRARA 61

Query: 209 LYSEFKNFFPHNAVEYFVSY----YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATR 264
                    P   +    S+    YD   P A +      +         + R+  S  R
Sbjct: 62  FGEALAFAAPDVEILDLPSWDCQPYDRVSPNAAIAAKRMMV---------LARLARS--R 110

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           S LER   +  +  + +  +  +   +        G++V    L + L    + R     
Sbjct: 111 SSLERPRILSTTVNALVQRLPPLRFIAANTFSAAPGNAVALDGLAAWLETNGFARSSTVR 170

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
             G + V G  ++++   +     R+  FG+ +E I  F P T + I  +  + +   S 
Sbjct: 171 DTGEYAVRGGIVDLYAPGMAQ-PVRLDFFGDTLESIRSFDPETQRTIGQLRALDLVPMSE 229

Query: 385 YVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
                 T+             R   + +         L        E +         E+
Sbjct: 230 VQLTTETIRHF----------RQAYVARFNAQTRGDTL-------YETISEGRRHPGCEH 272

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE-----SHVTIPQISGMYRGDFHRKATLAE 499
           +              TLF+Y+   +   +D      +   + QI   Y            
Sbjct: 273 WLPLFYDHL-----DTLFDYVG-GAPFVLDPQAEEAAKQRLAQIKDYYEARKSAYDADPA 326

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           +    P   D      E+W      T +V  +P +   +  +G +V+   +P        
Sbjct: 327 HVAYKPLPPDALYQTPEQWGKTLSLTSLVRISPFAVPPDSSRGPVVDLNSKPGRSFAAE- 385

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
                    E     +      G R++L   T    E L   + +  ++      + +T+
Sbjct: 386 RADPEANVFEAALTHVRALQGAGKRVILAAWTDGSRERLAHVMADHGLK------DQETI 439

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
                 + L+     V +G+  L +G +    GL  + + D  G       ++QT  +  
Sbjct: 440 SSFTQAQALKPST--VALGVIGLEQGFEAE--GLAVVGEQDILG-----DRIVQTRRKVR 490

Query: 680 RNVN 683
           R  +
Sbjct: 491 RAQD 494



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 76/191 (39%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + +  I  T  VD    +R+  +  +D+   + +     +
Sbjct: 774 HVLTLSATPIPRTLQLAMTGVRDLSIIATPPVDRLA-VRTFISPFDDLLVREALLRERYR 832

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +           ED+  YL      V+++  H ++   E  + +     GK+DVL+  
Sbjct: 833 GGQSFYVAPRIEDLEDVATYLRTHVPEVKFVVAHGQMAATELEDKMAAFYEGKYDVLLST 892

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G      +L Q  GR  R+      L+     K++  
Sbjct: 893 AIVESGLDIPTANTLIVHRADMFGL----AALYQLRGRVGRSKIRAYALFTVPPNKTLTP 948

Query: 700 AIDETTRRREK 710
              +  RR + 
Sbjct: 949 ---QAERRLKV 956


>gi|149278180|ref|ZP_01884318.1| transcription-repair coupling factor [Pedobacter sp. BAL39]
 gi|149230946|gb|EDM36327.1| transcription-repair coupling factor [Pedobacter sp. BAL39]
          Length = 1114

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 98/249 (39%), Gaps = 13/249 (5%)

Query: 155 AAIAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
             IA L K ++S +  +L L G+ G+            + +P + + P++  AA   ++ 
Sbjct: 14  ERIAALAKALNSGKGNKLQLKGLVGAADATIAVATYFLLHKPQLFILPDREEAAYFQADL 73

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           ++      + +  S+   +       + DT      +  E ++ + H+A     E    +
Sbjct: 74  ESILDKEILLFPSSFRKGFDFT----QVDT--ANVLARAEVLNELNHNA-----EYGKIV 122

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V    +    + +     +  +++ +   +    +   L+   ++R D     G F + G
Sbjct: 123 VTYPEALSEKVINRSMLEKNTLEIAVNTKLGIDFINEFLIDYDFERTDFVYEPGQFSIRG 182

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++IF S   D+ +R+  FG+ +E I  F       +  V+T+ I  N           
Sbjct: 183 GIVDIF-SFSHDLPYRIEFFGDIVESIRTFQIDNQLSVEEVKTLTIIPNVQSKYLTENNI 241

Query: 394 TAMKYIKEE 402
             + YI+++
Sbjct: 242 NLLDYIEKD 250



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 12/170 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L        +  I    P        E+     ++  + + +     +
Sbjct: 711 TLTLTATPIPRTLHFSLMGARDLSIMSTPPPNRQAVNTELHVFNDKL--IQEAVQYELDR 768

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++            L   +     + R    H ++      +++ D   G+ DVLV  
Sbjct: 769 GGQVFFIHNRVNDLPQLGGLIQTLVPKARIGIAHGQLDGDALEDVMLDFINGEKDVLVAT 828

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            ++  GLDIP    + I  A   G     + L Q  GR  R+ N K   Y
Sbjct: 829 TIIEAGLDIPNANTIIINHAHMFGL----SDLHQMRGRVGRS-NKKAFCY 873


>gi|62389854|ref|YP_225256.1| transcription-repair coupling factor [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325189|emb|CAF19670.1| PUTATIVE TRANSCRIPTION-REPAIR COUPLING FACTOR [Corynebacterium
           glutamicum ATCC 13032]
          Length = 1217

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 90/571 (15%), Positives = 178/571 (31%), Gaps = 71/571 (12%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            ++   + G+    + + +  +  A   P +V+      A  L +E K            
Sbjct: 26  GQQHLHITGI-DQARPWAIGAL--AHHAPVLVVTATGREAEDLTAELKAMMGDKVAWL-- 80

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
             ++    E   P  D   ++   +N                 +  +VV++         
Sbjct: 81  PSWETLPHERLSPGVDIVGKRAQVLNHL--------------GDLKVVVAAARAFCQPVL 126

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            ++  +  + LK G   +   L + LV + YK  D+   RG F   G  ++IFP+ L D 
Sbjct: 127 KDAEGRAPLTLKEGAEFDFSALTTELVFRAYKHVDMVAKRGEFATRGGILDIFPTTL-DY 185

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRN--VETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
             RV  +G+++ +I +F     + I    +++I+I+     +      + A   I     
Sbjct: 186 PVRVEFWGDEVSDIRQFSVADQRTIPEITIKSIEIFPARELLITEEVASRAESLI----- 240

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                 +  G     + L          +  +     +E     LT      P   + E 
Sbjct: 241 -----SKHPGNPTLVEMLS--------RIADSQDVDGMEALIPALT----DTPMVPMLEL 283

Query: 465 IPEDSLLFV---DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
           +PE++ + V   ++    I  +              A  G   P   +   L    +   
Sbjct: 284 MPENTHVLVIAPEKVRRRIADLEATDAEFLMAGWEAAAMGADGPVAAEGLDLEASSYRSY 343

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAA 579
               +  S +   W        + E     T  +D       R    +++ +  ++    
Sbjct: 344 ESLEVSASKSDVRW-WTFAPPGMFEASEEATLPLDFEAGPAPRGELPKIDAMMAQLLAHT 402

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             G R      T+   + + +   E+ I         +       +         V   +
Sbjct: 403 TGGGRAAFIAPTQGAIKRMVDRFAEKGIPTHVATPGWEPTPGQVTLYHALSHAGLVFPKV 462

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--------------- 684
              R+G  +P   LV I + D  G      +  +   R A+  N                
Sbjct: 463 RKHRDGAAMP---LVVITETDLTGNRVGDIAGAKR--RPAKRRNKVDPLALEPGDLVVHE 517

Query: 685 -KVILYADTITKSIQLAIDETTRRREKQLEH 714
              I     +T+    A DET+RR    LE+
Sbjct: 518 THGIGRFVKMTERTISAGDETSRREYIVLEY 548



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 68/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     T ++ PP +     T V   ED     ++  + 
Sbjct: 790 VLTMSATPIPRTLEMSMAGIREM----TTMLTPPEDRHPILTYVGPYEDKQVAASIRREL 845

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     + +     R +  H ++      + ++     ++DVLV
Sbjct: 846 LRDGQVFFIHNKVADIEKKAREIRDLVPEARVVVAHGQMSEELLEQTVQGFWDREYDVLV 905

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + + +A   G  +    L Q  GR  R+       +        
Sbjct: 906 CTTIVETGLDISNANTLIVENAHHMGLSQ----LHQLRGRVGRSRERGYAYFLYPKG--- 958

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + E +  R   +  N    
Sbjct: 959 -ATLTEMSYDRLATIAQNNDLG 979


>gi|19552188|ref|NP_600190.1| transcription-repair coupling factor [Corynebacterium glutamicum
           ATCC 13032]
          Length = 1214

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 90/571 (15%), Positives = 178/571 (31%), Gaps = 71/571 (12%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            ++   + G+    + + +  +  A   P +V+      A  L +E K            
Sbjct: 23  GQQHLHITGI-DQARPWAIGAL--AHHAPVLVVTATGREAEDLTAELKAMMGDKVAWL-- 77

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
             ++    E   P  D   ++   +N                 +  +VV++         
Sbjct: 78  PSWETLPHERLSPGVDIVGKRAQVLNHL--------------GDLKVVVAAARAFCQPVL 123

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            ++  +  + LK G   +   L + LV + YK  D+   RG F   G  ++IFP+ L D 
Sbjct: 124 KDAEGRAPLTLKEGAEFDFSALTTELVFRAYKHVDMVAKRGEFATRGGILDIFPTTL-DY 182

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRN--VETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
             RV  +G+++ +I +F     + I    +++I+I+     +      + A   I     
Sbjct: 183 PVRVEFWGDEVSDIRQFSVADQRTIPEITIKSIEIFPARELLITEEVASRAESLI----- 237

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                 +  G     + L          +  +     +E     LT      P   + E 
Sbjct: 238 -----SKHPGNPTLVEMLS--------RIADSQDVDGMEALIPALT----DTPMVPMLEL 280

Query: 465 IPEDSLLFV---DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
           +PE++ + V   ++    I  +              A  G   P   +   L    +   
Sbjct: 281 MPENTHVLVIAPEKVRRRIADLEATDAEFLMAGWEAAAMGADGPVAAEGLDLEASSYRSY 340

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAA 579
               +  S +   W        + E     T  +D       R    +++ +  ++    
Sbjct: 341 ESLEVSASKSDVRW-WTFAPPGMFEASEEATLPLDFEAGPAPRGELPKIDAMMAQLLAHT 399

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             G R      T+   + + +   E+ I         +       +         V   +
Sbjct: 400 TGGGRAAFIAPTQGAIKRMVDRFAEKGIPTHVATPGWEPTPGQVTLYHALSHAGLVFPKV 459

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--------------- 684
              R+G  +P   LV I + D  G      +  +   R A+  N                
Sbjct: 460 RKHRDGAAMP---LVVITETDLTGNRVGDIAGAKR--RPAKRRNKVDPLALEPGDLVVHE 514

Query: 685 -KVILYADTITKSIQLAIDETTRRREKQLEH 714
              I     +T+    A DET+RR    LE+
Sbjct: 515 THGIGRFVKMTERTISAGDETSRREYIVLEY 545



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 68/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     T ++ PP +     T V   ED     ++  + 
Sbjct: 787 VLTMSATPIPRTLEMSMAGIREM----TTMLTPPEDRHPILTYVGPYEDKQVAASIRREL 842

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     + +     R +  H ++      + ++     ++DVLV
Sbjct: 843 LRDGQVFFIHNKVADIEKKAREIRDLVPEARVVVAHGQMSEELLEQTVQGFWDREYDVLV 902

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + + +A   G  +    L Q  GR  R+       +        
Sbjct: 903 CTTIVETGLDISNANTLIVENAHHMGLSQ----LHQLRGRVGRSRERGYAYFLYPKG--- 955

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + E +  R   +  N    
Sbjct: 956 -ATLTEMSYDRLATIAQNNDLG 976


>gi|329577602|gb|EGG59035.1| conserved domain protein [Enterococcus faecalis TX1467]
          Length = 88

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/83 (53%), Positives = 60/83 (72%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP 195
           +    F + + Y P+GDQPAAIA+L+ G+   EK Q+LLG TG+GKTFT++ VI+ + +P
Sbjct: 5   ETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKP 64

Query: 196 AIVMAPNKILAAQLYSEFKNFFP 218
            +V+A NK LA QLY EFK FFP
Sbjct: 65  TLVIAHNKTLAGQLYGEFKEFFP 87


>gi|145295117|ref|YP_001137938.1| hypothetical protein cgR_1060 [Corynebacterium glutamicum R]
 gi|140845037|dbj|BAF54036.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1214

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 90/571 (15%), Positives = 178/571 (31%), Gaps = 71/571 (12%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            ++   + G+    + + +  +  A   P +V+      A  L +E K            
Sbjct: 23  GQQHLHITGI-DQARPWAIGAL--AHHAPVLVVTATGREAEDLTAELKAMMGDKVAWL-- 77

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
             ++    E   P  D   ++   +N                 +  +VV++         
Sbjct: 78  PSWETLPHERLSPGVDIVGKRAQVLNHL--------------GDLKVVVAAARAFCQPVL 123

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            ++  +  + LK G   +   L + LV + YK  D+   RG F   G  ++IFP+ L D 
Sbjct: 124 KDAEGRAPLTLKEGAEFDFSALTTELVFRAYKHVDMVAKRGEFATRGGILDIFPTTL-DY 182

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRN--VETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
             RV  +G+++ +I +F     + I    +++I+I+     +      + A   I     
Sbjct: 183 PVRVEFWGDEVSDIRQFSVADQRTIPEITIKSIEIFPARELLITEEVASRAESLI----- 237

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                 +  G     + L          +  +     +E     LT      P   + E 
Sbjct: 238 -----SKHPGNPTLVEMLS--------RIADSQDVDGMEALIPALT----DTPMVPMLEL 280

Query: 465 IPEDSLLFV---DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
           +PE++ + V   ++    I  +              A  G   P   +   L    +   
Sbjct: 281 MPENTHVLVIAPEKVRRRIADLEATDAEFLMAGWEAAAMGADGPVAAEGLDLEASSYRSY 340

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAA 579
               +  S +   W        + E     T  +D       R    +++ +  ++    
Sbjct: 341 ESLEVSASKSDVRW-WTFAPPGMFEASEEATLPLDFEAGPAPRGELPKIDAMMAQLLAHT 399

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             G R      T+   + + +   E+ I         +       +         V   +
Sbjct: 400 TGGGRAAFIAPTQGAIKRMVDRFAEKGIPTHVATPGWEPTPGQVTLYHALSHAGLVFPKV 459

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--------------- 684
              R+G  +P   LV I + D  G      +  +   R A+  N                
Sbjct: 460 RKHRDGAAMP---LVVITETDLTGNRVGDIAGAKR--RPAKRRNKVDPLALEPGDLVVHE 514

Query: 685 -KVILYADTITKSIQLAIDETTRRREKQLEH 714
              I     +T+    A DET+RR    LE+
Sbjct: 515 THGIGRFVKMTERTISAGDETSRREYIVLEY 545



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 68/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     T ++ PP +     T V   ED     ++  + 
Sbjct: 787 VLTMSATPIPRTLEMSMAGIREM----TTMLTPPEDRHPILTYVGPYEDKQVAASIRREL 842

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     + +     R +  H ++      + ++     ++DVLV
Sbjct: 843 LRDGQVFFIHNKVADIEKKAREIRDLVPEARVVVAHGQMSEELLEQTVQGFWDREYDVLV 902

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + + +A   G  +    L Q  GR  R+       +        
Sbjct: 903 CTTIVETGLDISNANTLIVENAHHMGLSQ----LHQLRGRVGRSRERGYAYFLYPKG--- 955

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + E +  R   +  N    
Sbjct: 956 -ATLTEMSYDRLATIAQNNDLG 976


>gi|254670469|emb|CBA06145.1| transcription-repair coupling factor [Neisseria meningitidis
           alpha153]
          Length = 1286

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/341 (17%), Positives = 113/341 (33%), Gaps = 45/341 (13%)

Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
           D + V   + +  +  V   +     LK G +++   L + LV   Y      +  G F 
Sbjct: 10  DVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVAAGEFA 69

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           V G  +++FP   E + +R+ +F ++I+ I  F   T + I  V  I++     + T   
Sbjct: 70  VRGGIVDLFPMGSE-MPYRIDLFDDEIDSIKTFDTDTQRTISPVSEIRLLPAHEFPTDSE 128

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
                    +EE+                           + +        +E Y     
Sbjct: 129 AQKIFRSRFREEVDG-----------------NPNDAAVYKAVSNGHFGAGVEYYLPLFF 171

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
                    TLF+YI ED+L     S   +   +  +  D   +  +A+     P     
Sbjct: 172 ENEL----ETLFDYIGEDALFV---SLGDVHAEANRFWSDVKSRYAMAQGDETYPP---- 220

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
                     L P  + +SA   +  L+    ++ +   +   L D  V       Q ++
Sbjct: 221 ----------LLPQHLYLSADVFAGRLKNYGQVLPDVSGKEHTLPDLAV-----NRQSDE 265

Query: 571 VYDEINLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +         RILL   +    E +  +L +  ++ +
Sbjct: 266 PLQALKDFQTTFDGRILLCAESLGRRETMLGFLQQNGLKAK 306



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 58/273 (21%)

Query: 525  TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQ 580
             + ++ATP    L                P+  +     ++  +   V    + +    +
Sbjct: 891  ILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSV---REAVLRELK 947

Query: 581  QGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +G ++      V T   M E L   L E  I V   H +++  E  +++RD    +F+VL
Sbjct: 948  RGGQVFFLHNEVDTIENMRERLETLLPEARIGVA--HGQLRERELEQVMRDFLQQRFNVL 1005

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +   ++  G+DIP    + I  ADK G  +    L Q  GR  R+ +             
Sbjct: 1006 LCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYL------- 1054

Query: 697  IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-------ATTNISID 749
                                   + P+ + +   + +D I   D        A  ++ I 
Sbjct: 1055 -----------------------LTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIR 1091

Query: 750  AQQLSLSKKKGKAHLK---SLRKQM-HLAADNL 778
                 L + +    ++   +L  +M   A  +L
Sbjct: 1092 GAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDL 1124


>gi|119505858|ref|ZP_01627923.1| transcription-repair coupling protein Mfd [marine gamma
           proteobacterium HTCC2080]
 gi|119458286|gb|EAW39396.1| transcription-repair coupling protein Mfd [marine gamma
           proteobacterium HTCC2080]
          Length = 1150

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 111/326 (34%), Gaps = 40/326 (12%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
             G+     +A++ +      +V+ P+   AA L  E   F   +     +  ++    +
Sbjct: 24  CPGTATAMAVAELAKQQAL-LVVVVPSSASAAALERELPLFSAADLNVLTLPDWETLPYD 82

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
            + P  D   E+ S+ ++          + +      ++V   + +     V   +   +
Sbjct: 83  NFSPHQDIVSERLSTFHQ---------LKDIASG--ILIVPITTLMQRTPPVHYVAGNSL 131

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L +G +++ K L+ +L    Y+  D     G + V G  ++IFP     V +R+ +F  
Sbjct: 132 VLDVGQALDSKTLIHNLTLNGYRAVDTVYEHGEYAVRGSLLDIFPM-GSQVPYRIDLFDA 190

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +IE +  F P   + I  VE+I++     +      +             +L    K   
Sbjct: 191 EIESLRTFDPENQRTISKVESIRLLPAREFPLTEEGIRRF----------KLNWYRKFDG 240

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
             EA  L   I                E +          +   T+F+YIP+ + L    
Sbjct: 241 DPEACPLFNEIC-------AGRVPGGAEYFLPLFF-----DSCGTVFDYIPDHAALITLG 288

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYG 501
            H              H      EYG
Sbjct: 289 DHYQAASQFWTEITSRH-----TEYG 309



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 64/176 (36%), Gaps = 7/176 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L    G + +  II         ++       +  V + I     +G 
Sbjct: 754 ILTMTATPIPRTLNMALGGLRDLSIIATPPARRLSIKTFVREHSISLVKEAILRETLRGG 813

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  E+    L E   N+ V   H +++      ++ D    +  +LV   +
Sbjct: 814 QVYYLHNEVKTIEETASRLREMLPNLSVGVGHGQLRETALEGVMTDFYHLRHHILVCSTI 873

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  G+DIP    + I  ADK G  +    L Q  GR  R+ +            ++
Sbjct: 874 IETGIDIPNANTIIIDRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLCPPRSTM 925



 Score = 40.8 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 9/107 (8%)

Query: 146 DYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            +  + DQ AAI  +   + + +   +L+ G  G GKT      A +     +   ++ P
Sbjct: 601 PFEETPDQSAAIEAVRADMCATKVMDRLVCGDVGFGKTEVAMRAAFIAIQNNKQVAILVP 660

Query: 202 NKILAAQLYSEFKNFFPH-----NAVEYFVSYYDYYQPEAYVPRTDT 243
             +LA Q Y+ F++ F         V  F S  D    +  V   D 
Sbjct: 661 TTLLAQQHYNSFRDRFADWPVKVEVVSRFQSNSDITSVQKRVASGDV 707


>gi|157363476|ref|YP_001470243.1| DEAD/DEAH box helicase domain-containing protein [Thermotoga
           lettingae TMO]
 gi|157314080|gb|ABV33179.1| DEAD/DEAH box helicase domain protein [Thermotoga lettingae TMO]
          Length = 939

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 102/583 (17%), Positives = 180/583 (30%), Gaps = 141/583 (24%)

Query: 184 TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243
           T+  +   +++P +++ P +  A  L  +   F                    Y P  D 
Sbjct: 4   TIDFLKLNLEKPVLIVVPTEYEAQLLSQKLNAF--------------------YFPSHDV 43

Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDS 302
           +  +E +++ ++   R      LL     ++V ++  I     S     Q    L+ G+ 
Sbjct: 44  FPFEEVAVSFEVRCRRIEILWKLLNDPKIVIVCTLHAISRKTFSPVQLRQAARILRKGEV 103

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEIS 361
               E   +++   Y R  I    G F V GD I+ F P +  D   RV +F   IE I 
Sbjct: 104 FHNPE--ETMLNLGYDRTYIVRTGGEFSVRGDVIDFFGPLY--DNPVRVELFDQTIEAIR 159

Query: 362 EFYPLTGQKIRNVETIKIYA---------------------------------------N 382
            F   T + +  VE   +                                          
Sbjct: 160 CFDASTQRSVFKVEEAFLLPVREYLCNEHLFDTVPAKLGSNSTILDYSDFEIFVAEFDRC 219

Query: 383 SHYVTPRPTLNTAM---KYIKEE----------LKMRLIELEKEGRLLEAQRLEQRIT-- 427
                 R      M   K I++           L  R+   +     L   ++  + +  
Sbjct: 220 QEEFAKREREAREMLEKKQIEDYVENSQISFSSLVKRIEFFKPLEIDLNTLKILPQTSQK 279

Query: 428 -------YDLEMLETTGSCQSIENYSRYLTG-----RNPGEPPPTLFEYIPEDSLLFV-- 473
                  +D E L         +       G        G     +  Y  EDS ++V  
Sbjct: 280 SRDQIPIFDEEELIEGEFVVHRDYGIGVYDGVKKISNPLGTREYFVLRY--EDSTVYVPV 337

Query: 474 -----------DESHVTIPQIS-GMYRGDFHR-KATLAEYGFRLPSCMDNRPLRFEEWNC 520
                      D  +V I +I  G ++    R K  L E    L    D R         
Sbjct: 338 ERIHKIHKYIGDTRNVRIDRIHSGNWKKRIERVKRNLREKVEELIRIYDTR--------- 388

Query: 521 LRPTTIVVSATPGSWELEQCQGIIV------EQIIRPTGLVDPPVEIRSAR--------- 565
                I   + PG  ELE+            +Q+     ++      +            
Sbjct: 389 ---QKISGLSLPGDPELEKRFAEFFPYAETDDQMTAIEEVLSDLANDKPMDRLLCGDAGY 445

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E            G ++ + V T    ++  +  T+ +    I+VR +   + T+ +
Sbjct: 446 GKTEVALRAAFKCVVSGKQVAVLVPTTVLARQHYKIFTQRMSPFGIQVRLLDRSISTIMK 505

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEG 663
            EI+  L  GK DV++G + LL+  +   + GLV I +    G
Sbjct: 506 KEILDGLFRGKIDVIIGTHALLQNNVRFSDLGLVIIDEEQSFG 548



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 9/186 (4%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E++  LR     + +SATP    L     G+    +I    +   PV    A+   + V 
Sbjct: 553 EKFKQLRTNVNVLSLSATPIPRTLHMAMTGMKDLSVINTPPIGRLPVITYVAKYSNQLVR 612

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRL 630
             +     +G +++         +D+ + L       +    H ++   +  E +R    
Sbjct: 613 GAVLREINRGGQVIYVHNRIHDIQDVYQNLQHIIPEAKIVLAHGKMGIRKLTEAVRSFYE 672

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              DV++  ++L  G+DIP    + + D+ + G  +    L Q  GR  R+       + 
Sbjct: 673 HDSDVILCTSILESGIDIPNANTIIVDDSHRYGLAQ----LYQLRGRVGRSTKRAFAYFL 728

Query: 691 DTITKS 696
                S
Sbjct: 729 HDSEIS 734


>gi|312194532|ref|YP_004014593.1| transcription-repair coupling factor [Frankia sp. EuI1c]
 gi|311225868|gb|ADP78723.1| transcription-repair coupling factor [Frankia sp. EuI1c]
          Length = 1215

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 77/208 (37%), Gaps = 6/208 (2%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
                 L G  G  + F +A +     R  + +      A  L     +     +V  + 
Sbjct: 39  GISPVDLSGPPG-LRPFAVAAL-ARSGRTILAVTATDREADDLTEALSSLLDPRSVALYP 96

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINE--QIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
           S+ +    E   P  DT   + + +      + +  S           +VV+ V  +   
Sbjct: 97  SW-ETLPHERLSPGADTVGRRLAVLRRLAHPEILAASGPADAAASPLSVVVAPVRAVLQP 155

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
              +      V L+ GDS +  +++  LV   Y R D+   RG   V G  +++FP   E
Sbjct: 156 QVKDLGQLEPVLLRSGDSADLADVVERLVGIAYHRVDLVERRGQIAVRGGILDVFPP-TE 214

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           +   RV  FG++IE+I  F     + + 
Sbjct: 215 EHPLRVEFFGDEIEDIRPFAVADQRALD 242



 Score = 42.0 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 63/203 (31%), Gaps = 21/203 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV-----EDVYDEINLA 578
            + +SATP    LE          IR    +D P E R    T V       V   I   
Sbjct: 806 VLTMSATPIPRTLEMSITG-----IRELSTIDTPPEERHPVLTSVSPYDQRQVAAAIRRE 860

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVL 636
             +  ++          +     L E     R    H ++      +++      KFDVL
Sbjct: 861 LLREGQVFFIHNRVESIDRAAARLRELVPEARIATAHGQLSEDVLEKVMVSFWERKFDVL 920

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  GLDI     + +  AD  G  +    L Q  GR  R        +     + 
Sbjct: 921 VCTTIVESGLDISNANTLIVERADNFGLSQ----LHQLRGRVGRGRERAYAYFLYPPDRP 976

Query: 697 IQLAIDETTRRREKQLEHNKKHN 719
               + ET   R   +  N    
Sbjct: 977 ----LTETAHDRLATIALNTDLG 995


>gi|21323730|dbj|BAB98356.1| Transcription-repair coupling factor - superfamily II helicase
           [Corynebacterium glutamicum ATCC 13032]
          Length = 1209

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 90/571 (15%), Positives = 178/571 (31%), Gaps = 71/571 (12%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            ++   + G+    + + +  +  A   P +V+      A  L +E K            
Sbjct: 18  GQQHLHITGI-DQARPWAIGAL--AHHAPVLVVTATGREAEDLTAELKAMMGDKVAWL-- 72

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
             ++    E   P  D   ++   +N                 +  +VV++         
Sbjct: 73  PSWETLPHERLSPGVDIVGKRAQVLNHL--------------GDLKVVVAAARAFCQPVL 118

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            ++  +  + LK G   +   L + LV + YK  D+   RG F   G  ++IFP+ L D 
Sbjct: 119 KDAEGRAPLTLKEGAEFDFSALTTELVFRAYKHVDMVAKRGEFATRGGILDIFPTTL-DY 177

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRN--VETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
             RV  +G+++ +I +F     + I    +++I+I+     +      + A   I     
Sbjct: 178 PVRVEFWGDEVSDIRQFSVADQRTIPEITIKSIEIFPARELLITEEVASRAESLI----- 232

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                 +  G     + L          +  +     +E     LT      P   + E 
Sbjct: 233 -----SKHPGNPTLVEMLS--------RIADSQDVDGMEALIPALT----DTPMVPMLEL 275

Query: 465 IPEDSLLFV---DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
           +PE++ + V   ++    I  +              A  G   P   +   L    +   
Sbjct: 276 MPENTHVLVIAPEKVRRRIADLEATDAEFLMAGWEAAAMGADGPVAAEGLDLEASSYRSY 335

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAA 579
               +  S +   W        + E     T  +D       R    +++ +  ++    
Sbjct: 336 ESLEVSASKSDVRW-WTFAPPGMFEASEEATLPLDFEAGPAPRGELPKIDAMMAQLLAHT 394

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             G R      T+   + + +   E+ I         +       +         V   +
Sbjct: 395 TGGGRAAFIAPTQGAIKRMVDRFAEKGIPTHVATPGWEPTPGQVTLYHALSHAGLVFPKV 454

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--------------- 684
              R+G  +P   LV I + D  G      +  +   R A+  N                
Sbjct: 455 RKHRDGAAMP---LVVITETDLTGNRVGDIAGAKR--RPAKRRNKVDPLALEPGDLVVHE 509

Query: 685 -KVILYADTITKSIQLAIDETTRRREKQLEH 714
              I     +T+    A DET+RR    LE+
Sbjct: 510 THGIGRFVKMTERTISAGDETSRREYIVLEY 540



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 68/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     T ++ PP +     T V   ED     ++  + 
Sbjct: 782 VLTMSATPIPRTLEMSMAGIREM----TTMLTPPEDRHPILTYVGPYEDKQVAASIRREL 837

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     + +     R +  H ++      + ++     ++DVLV
Sbjct: 838 LRDGQVFFIHNKVADIEKKAREIRDLVPEARVVVAHGQMSEELLEQTVQGFWDREYDVLV 897

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + + +A   G  +    L Q  GR  R+       +        
Sbjct: 898 CTTIVETGLDISNANTLIVENAHHMGLSQ----LHQLRGRVGRSRERGYAYFLYPKG--- 950

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + E +  R   +  N    
Sbjct: 951 -ATLTEMSYDRLATIAQNNDLG 971


>gi|90424109|ref|YP_532479.1| transcription-repair coupling factor [Rhodopseudomonas palustris
           BisB18]
 gi|90106123|gb|ABD88160.1| transcription-repair coupling factor [Rhodopseudomonas palustris
           BisB18]
          Length = 1172

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 121/362 (33%), Gaps = 51/362 (14%)

Query: 185 MAKVIEAMQRP----AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           +A+ + A  +P      V+  +     QL    + F P  AV  F             P 
Sbjct: 35  LARAVAARPKPPAVSLAVICRDGPRMQQLARSLEFFAPDLAVMQF-------------PA 81

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLL----ERNDCIVVSSVSCI-YGIGSVESYSQMIV 295
            D       S +  +   R +    L          IV+++V+ I   + + E  +   +
Sbjct: 82  WDCQPYDRVSPHGGVLAQRLTTLARLSRLKGSDKPLIVLTTVNAIVQRVPAREVIAAQAL 141

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +  G +V  + +++ L    Y R       G + V G  +++FP+ L D   R   FG+
Sbjct: 142 SVAPGHAVSMESIVAWLEHNGYNRSSTVREPGEYAVRGGILDLFPAGL-DQPVRFDFFGD 200

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
            +E I  F   T + + ++  + +   S +     T+           K R+  + + G 
Sbjct: 201 TLESIRTFDAETQRTLLDMRALDLVPISEFQLVTDTIR----------KFRMGYVAEFGA 250

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV-- 473
            L   +L        E +        +E++          E   TLF+Y+ + + + +  
Sbjct: 251 PLRDDQL-------YEAVSEGRRYPGMEHWLPLF-----QERMDTLFDYL-DRTPIAIEP 297

Query: 474 ---DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
              D +     QI   Y      +          P   D   L   EW        +   
Sbjct: 298 QGEDAARERFKQIGDYYLARREARDIPGGGAIYNPLPPDRLYLAEPEWEKCLQGVALARL 357

Query: 531 TP 532
           TP
Sbjct: 358 TP 359



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 13/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + +  I  +  VD    +R+     + +   + +     +
Sbjct: 772 HVLTLSATPIPRTLQLALTGVRDLSIIASPPVDRLA-VRTFVAPHDPLMIREALLRERYR 830

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +             + ++L +    ++V   H ++      +I+     GK+D+L+  
Sbjct: 831 GGQAFYVCPRIEDLAGVKDFLDKHVPEMKVAVAHGQMPPTVIEDIMSAFYDGKYDILLST 890

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+        Q 
Sbjct: 891 TIVESGLDIPNANTLIVHRADMFGLAQ----LYQLRGRVGRSKLRAYALFTLP----SQH 942

Query: 700 AIDETTRRREK 710
            I     RR K
Sbjct: 943 QITAQAERRLK 953


>gi|296393668|ref|YP_003658552.1| transcription-repair coupling factor [Segniliparus rotundus DSM
           44985]
 gi|296180815|gb|ADG97721.1| transcription-repair coupling factor [Segniliparus rotundus DSM
           44985]
          Length = 1214

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 118/343 (34%), Gaps = 38/343 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           IA+ L  +        +L  +G    F ++ V +    PA+V+ P +  A  L  E  + 
Sbjct: 17  IARPLGAMAGGRDGGQILSPSG-ALAFVVSAVAQ--SGPALVVVPGEREAGTLAQELADL 73

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND----- 271
                V               VP  +T   +  S + ++   R    R  L R       
Sbjct: 74  IGAQRVVL-------------VPAWETLPHERLSPSLRVVGERLWGLRRFLGREPSEGRA 120

Query: 272 --CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
               V+S+ S I  +          V+L++G   +  EL   L    Y R D+   RG F
Sbjct: 121 PDVAVMSARSFIQPV-EPAVLDVEPVRLRVGREEDLTELAEQLTALGYTRVDLVAERGDF 179

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
            V G  +++F S L+D   RV  +G++I E+  F  +  + +          +   +   
Sbjct: 180 AVRGGILDVF-SPLDDHPVRVQFWGDEITELRSFSVIDQRSLSGGSENGAGQDRTELIAP 238

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
           P        I  E++ R   +     +         +   L  L    +   +E     L
Sbjct: 239 PVRELL---ITPEVRERARAVADGASMPAP------VLEALAKLAEGVATPGVEALRDVL 289

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
           +    G P  +L + +   + L + E      +   + R D  
Sbjct: 290 S----GAPLKSLADMLEPGTRLVLGEVERVAARAVDLIRTDEE 328



 Score = 41.2 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 63/196 (32%), Gaps = 19/196 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I +     + ++ PP E     T V     + V   +    
Sbjct: 792 VLTLSATPIPRTLEMSLTGIRDM----STILTPPEERFPVLTYVGAHDEKQVAAALRREL 847

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          +     L E     R    H ++   +          G+ D+LV
Sbjct: 848 VRDGQVFYIHNRVSSIDKTAARLKELVPEARVAIAHGQMGEEQLEATAEAFWRGEHDILV 907

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R        +     +S 
Sbjct: 908 CTTIVESGLDIANANTLVVERADTLGLAQ----LHQLRGRVGRGGERAFAYFLYDPERS- 962

Query: 698 QLAIDETTRRREKQLE 713
              + ET   R   + 
Sbjct: 963 ---LSETAHERLATIA 975


>gi|148273452|ref|YP_001223013.1| putative transcription-repair coupling factor [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831382|emb|CAN02340.1| putative transcription-repair coupling factor [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 1210

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 76/543 (13%), Positives = 165/543 (30%), Gaps = 71/543 (13%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA----IVMAPNKI 204
           P+  + +     L          L  G+ G         + + +QR      +V+     
Sbjct: 8   PALSRASTFDDALASASRDADFSLTEGLQG---PLLAGLLRQRIQRGIPGCLLVVTATGR 64

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT- 263
            +  +        P   +  F ++ +    E   P  +   ++  ++        H+A  
Sbjct: 65  ESEGMRRSLDAVLPDAEILEFPAW-ETLPHERLSPSAEIVGKRIHALRRMEQW--HAALG 121

Query: 264 ---RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS---VEQKELLSSLVKQQY 317
              R +       +V   S    +  V      +  +++       +  EL   LV   Y
Sbjct: 122 QGAREVPAEQVRPLVIVASVRAALQPVADNLTELAPVQLATGSRGHDLSELAVRLVDLAY 181

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVET 376
            R D+   RG F V G  +++FP  + D   RV  FG++++++  F     + +   + +
Sbjct: 182 SRVDMVTRRGEFAVRGGILDVFPP-VSDHPVRVEFFGDEVDQMRPFAVADQRSLEEEITS 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           +++  +   +   P    A +                    E   L+Q +      +   
Sbjct: 241 VELPPSRELLLSAPVRQRARE-----------------MQHEFPNLQQMLA----KIAEG 279

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
              + +E+ +  L  R     P T   Y+P D+ + V        +   +   +      
Sbjct: 280 IPVEGMESLAPALVDRLV---PVT--HYLPVDAAIAVVSPERVSTRAQSLADTNRE---- 330

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL-V 555
             +  +   +     P+     + L    +  +  P  W             + P  L +
Sbjct: 331 FLDAAWNAATAGAQAPIDLASGDFLSLGRLRDARGPRRW---WTLSGFQATDVLPEDLGI 387

Query: 556 DPPVEIR-------SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           D  + +R       S     +   + +      G  + +      + E     L E  + 
Sbjct: 388 DEVMTVRIQADPVPSFAGNADGAIEHVRQRLADGWSVGVVAQGSGLVERADTVLREAGVP 447

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            R +  E        I   LR            +  G ++PE  L  + +++  G     
Sbjct: 448 ARVVE-EFPAEPEPGIAYLLRS----------AIDAGFEMPEVKLALLTESEFYGRAAGY 496

Query: 669 TSL 671
            S 
Sbjct: 497 DSR 499



 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 67/200 (33%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + +SATP    LE     I E     T   D    +       E               
Sbjct: 802 ILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTFVGPNSEKQIAAAIRRELLREG 861

Query: 585 ILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +  V  +     R+A +L E + E  + V   H ++      ++I D    KFDVLV  
Sbjct: 862 QVFFVHNRVSSINRVASELAELVPEARVAVA--HGKMSEAMLEQVIVDFWERKFDVLVST 919

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDI     + I  ADK G  +    L Q  GR  R        +     K    
Sbjct: 920 TIIETGLDIANANTLIIDRADKYGLSQ----LHQLRGRVGRGRERAYAYFLYDADKP--- 972

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R   +  N +  
Sbjct: 973 -LSETAHDRLSTIAANNELG 991


>gi|281412781|ref|YP_003346860.1| DEAD/DEAH box helicase domain protein [Thermotoga naphthophila
           RKU-10]
 gi|281373884|gb|ADA67446.1| DEAD/DEAH box helicase domain protein [Thermotoga naphthophila
           RKU-10]
          Length = 893

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 88/498 (17%), Positives = 173/498 (34%), Gaps = 82/498 (16%)

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIV 295
           + P  D    ++  ++ +I   R      LL   +  + +++  +   + S +   +  +
Sbjct: 20  FYPSRDVLPLEDVVLSPEIKGKRIEILWRLLNGENIKIATTLKALTEKVFSPDFLRENSL 79

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +     +        LV+  Y+R       G F + GD I+I+ S   D   R+ +FG+
Sbjct: 80  MITRSTKLTLS--PERLVEMGYERVFTVQNVGEFAIRGDIIDIY-SPGNDFPVRIELFGD 136

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR---PTLNTAMKYIKEELKMRLIELEK 412
           +IEEI  F   T +  ++ +   I               + T +++I E+L+  L E  K
Sbjct: 137 EIEEIRFFKVDTQRSFQSADKTLILPFVDLYGESTLLDFVKTDVRFICEDLQKVLDEYRK 196

Query: 413 EGRLLEA-----------QRLEQRITY----------------------DLEMLETTGSC 439
             + +             +R+ + +                        D++ +E  G  
Sbjct: 197 FRKEMRDLLKERYNDFFDERVVEVVLKNVEKASVSLSTRIEKKESLPILDVDEIEEGGLV 256

Query: 440 QSIENYSRYLTGRNP-----GEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDF 491
              E+      G        GE      +Y+    ED++L+V      I ++        
Sbjct: 257 VHREHGIAIFEGVVRLKGVLGER-----DYLKLKYEDAVLYV--PIEKIDRVHKYIGDPS 309

Query: 492 HRKATLAEYGF---RLPSCMDNRPLRFEEWNC--LRPTTIVVSATPGSWELEQCQGIIVE 546
             K      G     L    ++   +  E     ++       + PG  ELE+       
Sbjct: 310 QVKLDRMNRGKWKQTLKKVREDIEKKIRELVELYMKRQEAQGLSLPGDPELEEKFAESFP 369

Query: 547 QIIRPTGLVDPPVEI-------RSAR---------TQVEDVYDEINLAAQQGLRILLTVL 590
            I  P        E+       +             + E        A   G ++ + V 
Sbjct: 370 YIETPDQQQSIE-EVLYDLASEKPMDRLLCGDAGVGKTEVALRAAFRAVVSGKQVAVLVP 428

Query: 591 T----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREG 645
           T    ++  E+  E +    ++V  + S     E+ EII  L+ G+ D+++G + LL E 
Sbjct: 429 TTVLARQHYENFKERMETFGVKVELLDSSRTAREKKEIIEKLKKGEIDIIIGTHSLLNER 488

Query: 646 LDIPECGLVAILDADKEG 663
           ++  + GLV I +  K G
Sbjct: 489 IEFSDLGLVIIDEEQKFG 506



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 14/195 (7%)

Query: 516 EEWNCLR--PTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVY 572
           E +  LR     + +SATP    L      + +  +I        PV +  A    + V 
Sbjct: 511 ERFKKLRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVYVYVAEYSDDLVK 570

Query: 573 DEINLAAQQGLRILLT----VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             +     +G +++           + E L     E  I V   H ++       I+ + 
Sbjct: 571 GAVIREINRGGQVIYVHNRVEELPEVFEKLKRMFPELEIAVA--HGKMSRRTMERIVHEF 628

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G  DVL+   ++  G+DIP    + + DA + G  +    L Q  GR  R+ + +   
Sbjct: 629 YRGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYGLSQ----LYQLRGRVGRS-DRRAFA 683

Query: 689 YADTITKSIQLAIDE 703
           Y      + + A++ 
Sbjct: 684 YFLYPKGTPRSALER 698


>gi|325293164|ref|YP_004279028.1| transcription-repair coupling factor [Agrobacterium sp. H13-3]
 gi|325061017|gb|ADY64708.1| transcription-repair coupling factor [Agrobacterium sp. H13-3]
          Length = 1165

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 70/446 (15%), Positives = 139/446 (31%), Gaps = 52/446 (11%)

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-----NDCIVVSSVSCIYGIGSVE 288
           P   +P  D       S +      R +A   L+          ++V+  + +  +   +
Sbjct: 66  PVLTLPAWDCLPYDRVSPSADTSARRLAALAGLINHAKKPHPAIVLVTVNAMLQKMAPRD 125

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
               +    K G+ +  +++ + L +  + R       G F V G  +++F    E+   
Sbjct: 126 VIESLGFSAKPGNQIRMEDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGTEE-PV 184

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FG+ +E I  F P + + I    ++ +   S       T+             R  
Sbjct: 185 RLDFFGDTLESIRTFDPASQRTIAQARSLDLNPMSEVTLTPDTIGRF----------RKN 234

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
            L   G       L Q ++              +E++          E   T F+Y+   
Sbjct: 235 YLSLFGAATRDDALYQAVS-------EGRRYAGMEHWLPLFY-----EELETAFDYL-SG 281

Query: 469 SLLFVDESHVTIPQISGM----YRGDFH---RKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
             +  D +     +        Y            L +     P       L  + +   
Sbjct: 282 FRIVTDHTAREAAKERSKLVLDYYEARRASGETKGLTQGAPYKPVSPGQIYLDGKSFEAA 341

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTG--LVDPPVEIRSAR--TQVEDVYDEINL 577
             +   V  TP  +     +G  V  +    G     PP E  S       +     I  
Sbjct: 342 LASVNAVRLTP--FNEHDSEGRPVATLDAHVGPRWARPPTEGDSEERVNVFDLAVKHIAE 399

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              +G ++L+T  ++   + L + L E  +       ++K +  ++ +  L  G+    V
Sbjct: 400 RRAKGWKVLITGWSEGSLDRLLQVLNEHGLE------KIKPVTSLKEVEKLGKGEAASAV 453

Query: 638 GINLLREGLDIPECGLVAILDADKEG 663
               L  G +     L  I + D  G
Sbjct: 454 LS--LEAGFETG--TLAIIGEQDILG 475



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 93/260 (35%), Gaps = 35/260 (13%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 770  HVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMA-VRTFISPFDPLVIRETLMREHYR 828

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +            D+  +L      ++V   H ++   E  +I+     GK+DVL+  
Sbjct: 829  GGQSFYVCPRLADLADIHAFLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLST 888

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLD+P    + +  AD  G  +    L Q  GR  R+      L+   + K    
Sbjct: 889  TIVESGLDVPTANTLIVHRADMFGLAQ----LYQLRGRVGRSKVRAFALFTLPVNK---- 940

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             +     RR K                  +++ +D +       ++        +L  ++
Sbjct: 941  VLTTMAERRLK------------------VLQSLDTLGAGFQLASHDLDIRGAGNLLGEE 982

Query: 760  GKAHLK----SLRKQMHLAA 775
               H+K     L +QM   A
Sbjct: 983  QSGHIKEVGFELYQQMLEEA 1002


>gi|297521247|ref|ZP_06939633.1| excinuclease ABC subunit B [Escherichia coli OP50]
          Length = 116

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 8/110 (7%)

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--------PILLEDAATTN 745
           T S+  AI ET RRREKQ ++N++H I PQ + +K+++++                +   
Sbjct: 1   TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 60

Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
           +  D   + +S K  +  +  L   M   A NL FEEAA+IRD++ +L+ 
Sbjct: 61  VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 110


>gi|170289131|ref|YP_001739369.1| DEAD/DEAH box helicase domain-containing protein [Thermotoga sp.
           RQ2]
 gi|170176634|gb|ACB09686.1| DEAD/DEAH box helicase domain protein [Thermotoga sp. RQ2]
          Length = 893

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 87/497 (17%), Positives = 173/497 (34%), Gaps = 80/497 (16%)

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIV 295
           + P  D    ++  ++ +I   R      LL   +  + +++  +   + S +   +  +
Sbjct: 20  FYPSRDVLPLEDVVLSPEIKGKRIEILWRLLNGENIKIATTLKALTEKVFSPDFLRENSL 79

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +     +        LV+  Y+R       G F + GD I+I+ S   D   R+ +FG+
Sbjct: 80  MITRSTKLTLS--PERLVEMGYERVFTVQNVGEFAIRGDIIDIY-SPGNDFPVRIELFGD 136

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR---PTLNTAMKYIKEELKMRLIELEK 412
           +IEEI  F   T +  ++ +   I               + T +++I E+L+  L E  K
Sbjct: 137 EIEEIRFFKVDTQRSFQSADKTLILPFVDLYGESTLLDFVKTDVRFICEDLQKVLDEYRK 196

Query: 413 EGRLLEA-----------QRLEQRITY----------------------DLEMLETTGSC 439
             + +             +R+ + +                        D++ +E  G  
Sbjct: 197 FRKEMRDLLKERYNDFFDERVVEVVLKNVEKASVSLSTRIEKKESLPILDVDEIEEGGLV 256

Query: 440 QSIENYSRYLTGRNP-----GEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDF 491
              E+      G        GE      +Y+    ED++L+V      I ++        
Sbjct: 257 VHREHGIAIFEGVVRLKGVLGER-----DYLKLKYEDAVLYV--PIEKIDRVHKYIGDPS 309

Query: 492 HRKATLAEYGF---RLPSCMDNRPLRFEEWNC--LRPTTIVVSATPGSWELEQCQGIIVE 546
             K      G     L    ++   +  E     ++       + PG  ELE+       
Sbjct: 310 QVKLDRMNRGKWKQTLKKVREDIEKKIRELVELYMKRQEAQGLSLPGDPELEEKFAESFP 369

Query: 547 QIIRPT------GLVDPPVEIRSAR---------TQVEDVYDEINLAAQQGLRILLTVLT 591
            I  P        ++      +             + E        A   G ++ + V T
Sbjct: 370 YIETPDQQQSIEEVMSDLASEKPMDRLLCGDAGVGKTEVALRAAFRAVVSGKQVAVLVPT 429

Query: 592 ----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
               ++  E+  E +    ++V  + S     E+ EII  L+ G+ D+++G + LL E +
Sbjct: 430 TVLARQHYENFKERMETFGVKVELLDSSRTAREKKEIIEKLKKGEIDIIIGTHSLLNERI 489

Query: 647 DIPECGLVAILDADKEG 663
           +  + GLV I +  K G
Sbjct: 490 EFSDLGLVIIDEEQKFG 506



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 14/195 (7%)

Query: 516 EEWNCLR--PTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVY 572
           E +  LR     + +SATP    L      + +  +I        PV +  A    + V 
Sbjct: 511 ERFKKLRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVYVYVAEYSDDLVK 570

Query: 573 DEINLAAQQGLRILLT----VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             +     +G +++           + E L     E  I V   H ++       I+ + 
Sbjct: 571 GAVIREINRGGQVIYVHNRVEELPEVFEKLKRMFPELEIAVA--HGKMSRRAMERIVHEF 628

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G  DVL+   ++  G+DIP    + + DA + G  +    L Q  GR  R+ + +   
Sbjct: 629 YRGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYGLSQ----LYQLRGRVGRS-DRRAFA 683

Query: 689 YADTITKSIQLAIDE 703
           Y      + + A++ 
Sbjct: 684 YFLYPKGTPRSALER 698


>gi|291515893|emb|CBK65103.1| transcription-repair coupling factor (mfd) [Alistipes shahii WAL
           8301]
          Length = 1112

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 109/284 (38%), Gaps = 12/284 (4%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+ +L +   +R     L  + G   +F  A  +       + +A ++  AA L ++F 
Sbjct: 16  KALGRLCREYKNRSATVHLEELVGGALSFYAAAAVAESGGVHVFVAEDRDAAAYLLNDFY 75

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           N      V +F S +          R+  Y  +++    Q     H+      +    + 
Sbjct: 76  NLLDERQVYFFPSSWK---------RSAAYGAEDAQGVVQRTATMHAVRNFSGKGYLVVC 126

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
               +    +   E+  +  + +++GD +  + L  +LV   + R D     G + V G 
Sbjct: 127 TCPEALAERVADAEALQRETITVRVGDRISIEVLEQALVDASFTRVDFVYEPGQYSVRGG 186

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            +++F S+ E   +R+  FG++++ I  F   +      +E ++I  + +  TP     +
Sbjct: 187 IVDVF-SYSESKPYRLDFFGDEVDSIRRFNISSQLSSDRLERVEIIPDLNAGTPAAAKVS 245

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGS 438
             ++   E        + +  L     + +R   D+E  +   S
Sbjct: 246 FARFAGAEASWW--FYDADFVLRRVNDIRRRTLSDMEHPDEIDS 287



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 71/197 (36%), Gaps = 21/197 (10%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L     G     +I        P+   S     E + D +     +G 
Sbjct: 706 TLTLTATPIPRTLRFSLMGSRDLSVISTPPPNRQPILTESHVFSEEIIRDAVEAELARGG 765

Query: 584 RILLTVLTKRMAEDL-------TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           ++          EDL       T    +  + V   H ++   +  ++I D   G+FDVL
Sbjct: 766 QV---YFVHNRVEDLPALQGLITRLCPKARVAVG--HGKMPAEQLEKLIMDFIYGEFDVL 820

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   ++  G+DIP    + + +A   G     + L Q  GR  R+             + 
Sbjct: 821 VSTTIVENGIDIPNANTIIVDNAQNFGL----SDLHQLRGRVGRSNQKGYCYLLSPPDE- 875

Query: 697 IQLAIDETTRRREKQLE 713
               +    RRR + +E
Sbjct: 876 ---LLSSDARRRLRAIE 889


>gi|237785157|ref|YP_002905862.1| transcription-repair coupling factor [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758069|gb|ACR17319.1| transcription-repair coupling factor [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 1281

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 78/218 (35%), Gaps = 14/218 (6%)

Query: 180 GKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239
            +++    + E      +++      A  L +E ++     AV  F ++ +    E   P
Sbjct: 75  ARSWVARAIAEKSV--VVIVTATSREAQDLTAELRDMMGD-AVAMFPAW-ETLPHERLSP 130

Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
            ++T   +       +  +R  A    +     I +        I  +         + +
Sbjct: 131 GSETVGAR-------LKVLRRLAHPHDIPGEQPIRIVVAPARSFIQPIMKGLGEREPIIL 183

Query: 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEE 359
            +  +   + + L +  Y+  D+   RG F V G  ++IFPS  E +  R  ++G++I +
Sbjct: 184 AEDTDVTGIATRLAEMGYQHVDLVGKRGEFAVRGGVVDIFPSTAE-LPVRAELWGDEISD 242

Query: 360 ISEFYPLTGQKIRNVE--TIKIYANSHYVTPRPTLNTA 395
           +  F     + I N +   + +Y              A
Sbjct: 243 LRAFSVGDQRTIENFDPGAVPVYPCRELRIDDAVRARA 280



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 70/203 (34%), Gaps = 21/203 (10%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV---EDVYDEINLAAQ 580
             + +SATP    LE          IR    +  P E R    T V   ED      +  +
Sbjct: 846  MLTMSATPIPRTLEMSMAG-----IRDMSTILTPPEDRHPVLTYVGVQEDKQIAAAIRRE 900

Query: 581  --QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVL 636
              +  ++       R  E + +++ E     R +  H ++   +    +      ++DVL
Sbjct: 901  LLRDGQVFYVHNRVRSIEQVAQHIRELVPEARVVVAHGQMNEDQLENTVEGFWDREYDVL 960

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            V   ++  GLDI     + + +A   G  +    L Q  GR  R+       +    +  
Sbjct: 961  VCTTIVETGLDISNANTLIVENAHHMGLAQ----LHQLRGRVGRSRERGYAYFLYPPS-- 1014

Query: 697  IQLAIDETTRRREKQLEHNKKHN 719
                + ET+  R   +  N    
Sbjct: 1015 --QTLTETSYDRLSTIAQNNDLG 1035


>gi|315122360|ref|YP_004062849.1| transcription-repair coupling factor [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495762|gb|ADR52361.1| transcription-repair coupling factor [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 1185

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 64/464 (13%), Positives = 146/464 (31%), Gaps = 61/464 (13%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
               K   L  V    + F +A+ I       + +  ++     +        P   V  
Sbjct: 12  EKPCKKITLSQVFPGTEPFVLAE-IARSGLSLVYIGSDERALVNIKKTLAFIVPDIDVII 70

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE----RNDCIVVSSVSC 280
           F             P  D       S + ++   R +    L+     +   I++++VS 
Sbjct: 71  F-------------PAWDCLPYDRISASPRVVTDRLACFSHLISCNPSKKTSIILTTVSA 117

Query: 281 IY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
           +     +  S       ++  D +   +++  L K  ++R +     G + V G  ++++
Sbjct: 118 VMCRSVNFMSIKDCKFSIQSKDQISMAKVIEKLEKNGFQRVNTVYKVGEYAVRGGILDVY 177

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
               E    R+  FG+ IE +  F   + + IR + T  I   S  V     ++      
Sbjct: 178 -GPSEKYPVRLDFFGDTIESLRLFDYASQRTIREISTFTINTLSEVVLTSENISLF---- 232

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
                 R   L   G   +   L   ++              +E++  +   +       
Sbjct: 233 ------RKNYLLNFGAATQKDLLYVTVS-------QGNRYPGMEHWLPFFYQKME----- 274

Query: 460 TLFEYIPEDSLLFVD----ESHVTIPQISGMYRGDF----HRKATLAEYGFRLPSCMDNR 511
           T+F Y+  D  +  D    ++     Q+   Y          K   + Y   LP   +  
Sbjct: 275 TIFSYL-ADFCIVTDSAVKDTAHKRSQLIQDYYEARCQHSSDKKNYSIYKPILP---EKL 330

Query: 512 PLRFEEWNCLR-PTTIVVSATP-GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS-----A 564
            L ++++  +   +  ++  TP    E      + +      + +     +I S     +
Sbjct: 331 YLTYQQFEAMLESSNKLIQMTPFSQQETSHSCVVCLNVRPGKSWVPSAVQKIESQENWES 390

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
             + +     +    Q+G +  +   +K   + L   +    + 
Sbjct: 391 MNRFDRFLSYVAQQFQKGKKAFIAASSKGALQHLIHLMESDGLN 434



 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 67/178 (37%), Gaps = 9/178 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+      V ++   +      +  R++ +  + +   + +     +
Sbjct: 774 HVLTLSATPIPRTLQLA-ITGVRELSLISMPPINRIACRTSISIFDPLLIRETLMREYYR 832

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +           +   ++L      ++V   H ++      E +      K+D+L+  
Sbjct: 833 GGQSFYVCPRLLDLDKCYDFLQSEVPELKVAMAHGQMSPKNLEETMNGFYERKYDILLST 892

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +++  GLD+P    + I  AD  G  +    L Q  GR  R+  S   L+     K +
Sbjct: 893 SIVESGLDLPNANTIIIQRADMFGLAQ----LYQLRGRVGRSKISSFALFLLPENKPL 946


>gi|297183227|gb|ADI19367.1| transcription-repair coupling factor (superfamily II helicase)
           [uncultured Chloroflexi bacterium HF0500_03M05]
          Length = 1192

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 89/518 (17%), Positives = 172/518 (33%), Gaps = 70/518 (13%)

Query: 157 IAQLLKGIHSRE---KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
             QL K +   E   +VQ+L         F  A +   ++ P +V+ P    A  LY + 
Sbjct: 16  FQQLQKSLARTETSARVQVLANAV----PFVFATLSRCLRGPMLVVTPRAEDARSLYEQL 71

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
             +        +    +    E  V   +T  ++  +++  ID           ++   +
Sbjct: 72  IIWTGDGDTVLYFPENETLPFERLVSDIETTHQRLRTLSRMID---------PKDQPCIV 122

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V S+ +        + +      L  G  ++ KE++    +  Y  + +    G     G
Sbjct: 123 VSSATAVAQKSIGRQVFESSTHTLYKGQHIKFKEMIDLWCRMGYMVEPVADAPGLVSRRG 182

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             ++IFP        R+ ++G++I+ I  F P + +    V+++ +      +      +
Sbjct: 183 GILDIFPVGSSS-PVRIELWGDEIDSIRLFDPTSQRSTSLVDSVTVIPAQEILPDLTERD 241

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
              + I          L+     +       RI+ +L  L   G    +  YS +     
Sbjct: 242 QLDRLI--------DSLDMSNCTVTT---RDRISNELASLLKGGDTDGLNFYSGFFNR-- 288

Query: 454 PGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR---LPSCMDN 510
                 +L  + P D +L +        +I    + +  R   L +   R   LP    +
Sbjct: 289 -----DSLLNFFPLDGVLALYRP----SEIDDTTKANDERTYQLRDVKERRGDLPRAFPS 339

Query: 511 RPLRFEEWNCLRPTTI-VVSATP-GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
             + + E   +       +  TP G+ EL   Q   V     P               ++
Sbjct: 340 SHMLWREVQGMMERIHRRLDITPWGAQELTN-QDTYVLPFTSPPEYF----------GKL 388

Query: 569 EDVYDEINLAAQQGLRIL-LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           E   ++ N  A  G  ++ +T + KRM E L EY     +    +               
Sbjct: 389 EKFVEDANDLANGGHCVVAVTSVPKRMREILNEY----GVNANLLQCPDDIPV------- 437

Query: 628 LRLGKFDVLVGINL-LREGLDIPECGLVAILDADKEGF 664
              G   VL    +   EG  +   G   I+ +D E F
Sbjct: 438 --PGSITVLQVTGMGFNEGYSLSLNGHKLIVFSDTEIF 473



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 54/151 (35%), Gaps = 13/151 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV-----EDVYDEINL 577
             + ++ATP    L           IR    +D P E R   +T V     E V + I  
Sbjct: 770 EVLTMTATPIPRTLHLSLAG-----IRDMSTIDTPPEERLPIKTYVSEFSDELVREAIRR 824

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDV 635
              +  ++       R  + +  Y+            H ++   +    + D   GK DV
Sbjct: 825 EIDRQGQVFFLHNRVRNIDYMANYIRAMVPEAEVGIAHGQMPEDQLERSMIDFADGKTDV 884

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLR 666
           LV   ++  GLDIP    + I  +D  G  +
Sbjct: 885 LVCTTIIESGLDIPNVNTLIINRSDTFGLAQ 915


>gi|15644199|ref|NP_229249.1| transcription-repair coupling factor, putative [Thermotoga maritima
           MSB8]
 gi|4982014|gb|AAD36518.1|AE001796_10 transcription-repair coupling factor, putative [Thermotoga maritima
           MSB8]
          Length = 893

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 89/497 (17%), Positives = 173/497 (34%), Gaps = 80/497 (16%)

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQMIV 295
           + P  D    ++  ++ +I   R      LL   +  + +++  +   + S +   +  +
Sbjct: 20  FYPSRDVLPLEDVVLSPEIKGKRIEILWRLLNGENLKIATTLKALTEKVFSPDFLRENSL 79

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            +     +        LV+  Y+        G F + GD I+I+ S   D   R+ +FG+
Sbjct: 80  MIARSTKLTLS--PEKLVEMGYELVFTVQNVGEFAIRGDIIDIY-SPGNDFPVRIELFGD 136

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR---PTLNTAMKYIKEELKMRLIELEK 412
           +IEEI  F   T +  + V+   I     +         L T  ++I E+L+  L E  K
Sbjct: 137 EIEEIRFFKVDTQRSFQGVDKTLILPFVDFYGESTLLDFLKTDARFICEDLQKVLDEYRK 196

Query: 413 EGRLLEA-----------QRLEQRITY----------------------DLEMLETTGSC 439
             + +             +R+ + I                        D++ +E  G  
Sbjct: 197 FRKEMRDLLKERYNDFFDERVVEVILKNVEKGSAPLSTRVEKKESLPILDVDEIEEGGLV 256

Query: 440 QSIENYSRYLTGRNP-----GEPPPTLFEYIP---EDSLLFVDESHVTIPQISGMYRGDF 491
              E+      G        GE      +Y+    ED++L+V      I ++        
Sbjct: 257 VHREHGIAIFEGIVRLKGVLGER-----DYLKLKYEDAILYV--PIEKIDRVHKYIGDPS 309

Query: 492 HRKATLAEYGF---RLPSCMDNRPLRFEEWNC--LRPTTIVVSATPGSWELEQCQGIIVE 546
             K      G     L    ++   + +E     ++       + PG  ELE+       
Sbjct: 310 QVKLDRMNRGKWKQTLKKVREDIEKKIKELVELYMKRQEAQGLSLPGDPELEEKFAESFP 369

Query: 547 QIIRPT------GLVDPPVEIRSAR---------TQVEDVYDEINLAAQQGLRILLTVLT 591
            I  P        ++      +             + E        A   G ++ + V T
Sbjct: 370 YIETPDQQQSIEEVLSDLASEKPMDRLLCGDAGVGKTEVALRAAFRAVASGKQVAVLVPT 429

Query: 592 ----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
               ++  E+  E +    ++V  + S     E+ EII  L+ G+ D+++G + LL E +
Sbjct: 430 TVLARQHYENFKERMEPFGVKVELLDSSRTAREKKEIIEKLKKGEIDIIIGTHSLLNERI 489

Query: 647 DIPECGLVAILDADKEG 663
           +  + GLV I +  K G
Sbjct: 490 EFSDLGLVIIDEEQKFG 506



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 14/195 (7%)

Query: 516 EEWNCLR--PTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVY 572
           E +  LR     + +SATP    L      + +  +I        PV +  A    + V 
Sbjct: 511 ERFKKLRLSVNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVYVYVAEYSDDLVK 570

Query: 573 DEINLAAQQGLRILLT----VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             +     +G +++           + E L     E  I V   H ++       I+ + 
Sbjct: 571 GAVIREINRGGQVIYVHNRVEELPEVFEKLKRMFPELEIAVA--HGKMSRKTMERIVHEF 628

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G  DVL+   ++  G+DIP    + + DA + G  +    L Q  GR  R+ + +   
Sbjct: 629 YRGNIDVLLCTTIIENGVDIPNANTLIVDDAQRYGLSQ----LYQLRGRVGRS-DRRAFA 683

Query: 689 YADTITKSIQLAIDE 703
           Y      + + A++ 
Sbjct: 684 YFLYPKGTPRSALER 698


>gi|167855057|ref|ZP_02477830.1| transcription-repair coupling factor [Haemophilus parasuis 29755]
 gi|167853795|gb|EDS25036.1| transcription-repair coupling factor [Haemophilus parasuis 29755]
          Length = 1149

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 117/320 (36%), Gaps = 38/320 (11%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           +  Q L  + G   T  + +  +  Q   +V+ P+   A +L           ++  F  
Sbjct: 17  QDHQTLGNLIGHSDTLAIVQTSQQFQGLTVVVTPDTRTALRL---------EKSLPSFTK 67

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-NDCIVVSSVSCIYGIGS 286
                 P    P  +T      S ++ I   R SA   L +      ++   + +  +  
Sbjct: 68  L-----PVQLFPDWETLPYDNFSPHQDIISARLSALFQLQQGQKQIFLLPINTLLQKVCP 122

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
               +  ++ +K GD    ++L   L    Y+  +  +  G + V G  ++++P    + 
Sbjct: 123 PSYLANNVLLIKKGDRFSIEKLRLQLENAGYRAVEQVLEYGEYAVRGALLDLYPM-GANS 181

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMR 406
            +R+  F ++I+ I  F     + I  ++ I +     +    PT +  ++Y + + + +
Sbjct: 182 PYRLDFFDDEIDTIRTFDVDNQRTIEQIDAINLLPAHEF----PTDSNGIEYFRGKFREQ 237

Query: 407 LIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP 466
             E+ +     E + + Q+++              IE +          E   +LFEY+P
Sbjct: 238 FGEIRR-----EPEHIYQQVSK-------GILNAGIEYWQPLFF-----EQMASLFEYLP 280

Query: 467 EDS-LLFVDESHVTIPQISG 485
           E +  +   +      Q   
Sbjct: 281 EQTLFITFADIQQKAEQFQQ 300



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 11/180 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R +   V  + + I     +
Sbjct: 757 ILTLTATPIPRTLNMALNGMRDLSIIASPPARRLSIKTFVRQSDDTV--IKEAILREILR 814

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+  + L E     R +  H +++  E   ++ D    +F++LV  
Sbjct: 815 GGQVYYLHNDVATIENTAQQLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCS 874

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 875 TIIETGIDVPTANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYAYMLTPPPKTLTK 930


>gi|170782785|ref|YP_001711119.1| transcription-repair coupling factor [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169157355|emb|CAQ02542.1| transcription-repair coupling factor [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 1210

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 75/543 (13%), Positives = 165/543 (30%), Gaps = 71/543 (13%)

Query: 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA----IVMAPNKI 204
           P+  + +     L          L  G+ G         + + +QR      +V+     
Sbjct: 8   PALSRASTFDDALASASRDADFSLTEGLQG---PLLAGLLRQRIQRGIPGCLLVVTATGR 64

Query: 205 LAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT- 263
            +  +        P   +  F ++ +    E   P  +   ++  ++        H+A  
Sbjct: 65  ESEGMRRSLDAVLPDAEILEFPAW-ETLPHERLSPSAEIVGKRIHALRRMEQW--HAALG 121

Query: 264 ---RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS---VEQKELLSSLVKQQY 317
              R +       +V   S    +  V      +  +++       +  EL   LV   Y
Sbjct: 122 QGAREVPADQVRPLVIVASVRAALQPVADNLTELAPVQLATGSRGHDLSELAVRLVDLAY 181

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVET 376
            R D+   RG F V G  +++FP  + D   RV  FG++++++  F     + +   + +
Sbjct: 182 SRVDMVTRRGEFAVRGGILDVFPP-VSDHPVRVEFFGDEVDQMRPFAVADQRSLEEEITS 240

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETT 436
           +++  +   +   P    A +                    E   L+Q +      +   
Sbjct: 241 VELPPSRELLLSAPVRQRARE-----------------MQHEFPNLQQMLA----KIAEG 279

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
              + +E+ +  L  R     P T   Y+P D+ + V        +   +   +      
Sbjct: 280 IPVEGMESLAPALVDRLV---PVT--HYLPVDAAIAVVSPERVSTRAQSLADTNRE---- 330

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL-V 555
             +  +   +     P+     + L    +  +  P  W             + P  L +
Sbjct: 331 FLDAAWNAATAGAQAPIDLASGDFLSLGRLRDARGPRRW---WTLSGFQATDVLPEDLGI 387

Query: 556 DPPVEIR-------SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           D  + +R       S     +   + +      G  + +      + E     L +  + 
Sbjct: 388 DEVMTVRIQADPVPSFAGNADGAIEHVRERLAAGWAVGVVAQGSGLVERADTVLRDAGVP 447

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
            R +  E        I   LR            +  G ++PE  L  + +++  G     
Sbjct: 448 ARVVE-EFPAEPEPGIAYLLRS----------AIDAGFEMPEVKLALLTESEFYGRAAGY 496

Query: 669 TSL 671
            S 
Sbjct: 497 DSR 499



 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 67/200 (33%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + +SATP    LE     I E     T   D    +       E               
Sbjct: 802 ILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTFVGPNSEKQIAAAIRRELLREG 861

Query: 585 ILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +  V  +     R+A +L E + E  + V   H ++      ++I D    KFDVLV  
Sbjct: 862 QVFFVHNRVSSINRVASELAELVPEARVAVA--HGKMSEAMLEQVIVDFWERKFDVLVST 919

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDI     + I  ADK G  +    L Q  GR  R        +     K    
Sbjct: 920 TIIETGLDIANANTLIIDRADKYGLSQ----LHQLRGRVGRGRERAYAYFLYDADKP--- 972

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R   +  N +  
Sbjct: 973 -LSETAHDRLSTIAANNELG 991


>gi|325297801|ref|YP_004257718.1| transcription-repair coupling factor [Bacteroides salanitronis DSM
           18170]
 gi|324317354|gb|ADY35245.1| transcription-repair coupling factor [Bacteroides salanitronis DSM
           18170]
          Length = 1122

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 115/325 (35%), Gaps = 41/325 (12%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +A LL+      +   L G   S  +F  +  ++      + +  ++  A   Y +    
Sbjct: 19  LADLLQ--RKDIRTIFLEGTHASSPSFFASAYVKEHPGVNLFVLNDQEEAGYFYHDIVQA 76

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                + +F S Y              Y +++++     + +R      L +     +V+
Sbjct: 77  NGDADILFFPSSYRRAIK---------YGQRDAAN----EILRTEVLTRLGKSESVSIVT 123

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
               +   + S       ++ LK+G  +   ++   L    ++  D     G F   G  
Sbjct: 124 YPDALAEKVVSQRELDTQMLVLKVGQEIATDKIAEQLTAFGFEHVDYVYEPGQFATRGSI 183

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP----- 390
            ++F S   +  +R+  FG++I+ I  F   +       +T+ I       +        
Sbjct: 184 FDVF-SFASEYPYRIDFFGDEIDSIRTFEVESQLSKEKKDTVSIVPELSKSSGADVCFLD 242

Query: 391 -TLNTAMKYIKEEL--KMRLIELEKE-----------GRLLEAQRLEQRITYDLEMLETT 436
              +TA+ ++K+ +  + R+  +  +           G  ++   L+Q++    E L+  
Sbjct: 243 FIPDTAIIWVKDLMWVRERIQTVHDDTFSPQAIQAYEGEAVDLDNLKQKLVDGPEFLQKA 302

Query: 437 GSCQSIENYSRYLTGRNPGEPPPTL 461
            S + I+        +  G P  TL
Sbjct: 303 LSFRRID-----FGHKAAGTPQATL 322



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 14/171 (8%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+       P+  E+ +   ++  + D IN    +
Sbjct: 708 TLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNEEI--IADAINFEMSR 765

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIR---VRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++       +   +L + + ERNI    V   H ++K  E  +II D     +DVL+ 
Sbjct: 766 NGQVFFVNNRIQNLPEL-KAMIERNIPDCRVCVGHGQMKPEELEKIIFDFVNYDYDVLLA 824

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
             ++  G+DIP    + I  A   G     + L Q  GR  R+ N K   Y
Sbjct: 825 TTIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRS-NKKAFCY 870


>gi|15644499|ref|NP_229551.1| excinuclease ABC, subunit B-related protein [Thermotoga maritima
           MSB8]
 gi|4982331|gb|AAD36818.1|AE001813_10 excinuclease ABC, subunit B-related protein [Thermotoga maritima
           MSB8]
          Length = 99

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/86 (66%), Positives = 69/86 (80%)

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           G+NLLREGLD+ E   VAI+DAD EGFLRS+T+LIQ IGR ARNVN KVI+YAD IT ++
Sbjct: 12  GVNLLREGLDLLEVSPVAIMDADVEGFLRSETTLIQIIGRTARNVNGKVIMYADRITNAM 71

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQ 723
           + AI+ET RRR  QLE+N+KH I  Q
Sbjct: 72  KRAIEETNRRRRIQLEYNRKHGITLQ 97


>gi|282878269|ref|ZP_06287065.1| transcription-repair coupling factor [Prevotella buccalis ATCC
           35310]
 gi|281299687|gb|EFA92060.1| transcription-repair coupling factor [Prevotella buccalis ATCC
           35310]
          Length = 1153

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 88/231 (38%), Gaps = 17/231 (7%)

Query: 154 PAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           P A   L K +  +  K   L G+  S      A + + + +  + +  +   A   Y +
Sbjct: 20  PQA-GALRKALEDKSVKTVFLQGLMASAAPMLFAGMAKQLTKTILFILQDADEAGYFYHD 78

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                 +  V YF S Y          R   Y +++++     + +R      L      
Sbjct: 79  LTQALGNQQVLYFPSSYR---------RAVKYGQRDAAN----EILRTEVLSKLAAGKPL 125

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V+S   +   + S +   +  ++L +G +V+  +L  +L+  +++  D     G F V
Sbjct: 126 YIVASPESLCELVVSKQKLDEGTIKLNVGQTVDPMQLKKNLLAFEFQEVDYVYEPGQFAV 185

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
            G  ++++ S   +   R+  FG++++ I  F             I+I   
Sbjct: 186 RGSIVDVY-SFSSEWPLRIDFFGDEVDTIRTFDVQDQLSKDKQTAIEIVPQ 235



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 17/195 (8%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     ++R       P+         E + D IN    +  
Sbjct: 742 TLTMSATPIPRTLQFSLMGARDMSVMRTPPPNRYPIHTEIGVYGHEIITDAINFEMSRNG 801

Query: 584 RILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++   V  +      + + + +Y+ +  + +   H ++   +   I+ D     +DVL+ 
Sbjct: 802 QV-YFVNDRISTLPEIEKMILKYVPDCRVAIG--HGQMPPEQLETILIDFMNHDYDVLLS 858

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +++  G+DI     + I +A + G     + L Q  GR  R+ N K   Y     KS+ 
Sbjct: 859 TSIVENGIDISNANTIIINNAHRIGL----SDLHQMRGRVGRS-NRKAFCYLLAPPKSV- 912

Query: 699 LAIDETTRRREKQLE 713
             +    RRR + LE
Sbjct: 913 --LTPEARRRLEALE 925


>gi|228471775|ref|ZP_04056548.1| transcription-repair coupling factor [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228276928|gb|EEK15623.1| transcription-repair coupling factor [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 1110

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 92/245 (37%), Gaps = 17/245 (6%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           QL + I   +       + GS  +F +  + +   +  + +  +K  AA L ++ +    
Sbjct: 18  QLSEYIK-GKTSCFAENLVGSSLSFVLFDIFKRTGQTLLFVGDDKEQAAYLLNDLELLLG 76

Query: 219 HNAVEYFVSYYD-YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
              V +F S Y   YQ E                +     +R      L +    +V  S
Sbjct: 77  QEQVLFFPSSYRRPYQTEE--------------TDNANVLLRAEVLSQLQQGARVVVSYS 122

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            +    + + +   +  + LK G+ +    L  +L + Q++R D     G F V G  ++
Sbjct: 123 EALFEKVLTRQQLDKNTLTLKRGEHLSLDILNETLFEYQFQRVDFVSEPGEFSVRGGIVD 182

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           +F S   D  +R+  F + +E I  F   T   ++ V ++ I  N           + + 
Sbjct: 183 VF-SFSNDTPYRIEFFSDVVESIRTFDVETQLSLQQVSSVVIIPNIESKVAGEQRTSFLS 241

Query: 398 YIKEE 402
            + EE
Sbjct: 242 LLPEE 246



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 77/192 (40%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+       +  +I        P+E +      E + D I    Q+G 
Sbjct: 703 VLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIESQIISFNEEVIRDGIAYELQRGG 762

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   +     + ++   H +++  +  E++     G +D+LV   +
Sbjct: 763 QVFFIHNRVENIKEVAGMIQRLIPDAKIGIGHGQMEGKQLEEVMLAFINGDYDILVATTI 822

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+P    + I +A   G     + L Q  GR  R+ N K   Y  T   S    +
Sbjct: 823 IESGLDVPNANTIFIHNAQHFGL----SDLHQMRGRVGRS-NKKAFCYFITPNLS---EL 874

Query: 702 DETTRRREKQLE 713
            E +R+R + + 
Sbjct: 875 PEDSRKRMQAIA 886



 Score = 42.0 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A   G ++ + V T     +  +   E L E  +RV Y++      E+
Sbjct: 585 GKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHYQTFCERLKELPVRVEYLNRFRTAKEK 644

Query: 622 IEIIRDLRLGKFDVLVGI-NLLREGLDIPECGLVAILDADKEG 663
            +++ DL  GK D+L+G   ++ E +   + GL+ I +  K G
Sbjct: 645 NQVLADLASGKVDILIGTHQIVNEKVKYKDLGLLVIDEEQKFG 687


>gi|157964740|ref|YP_001499564.1| transcription-repair coupling factor [Rickettsia massiliae MTU5]
 gi|157844516|gb|ABV85017.1| Transcription-repair coupling factor [Rickettsia massiliae MTU5]
          Length = 1134

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 123/372 (33%), Gaps = 55/372 (14%)

Query: 179 SGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           + K+F  +    + +++  I+ A N+  A QLY +   F  +  + YF            
Sbjct: 21  AAKSFFAIDNFTKNLKQDFILSASNEEEALQLYKQALFFSSNENIYYF------------ 68

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERN---DCIVVSSVSCIYGIGSVESYSQMI 294
            P  DT     +S N  I   R      L   N     ++  + + +  +   + +S+  
Sbjct: 69  -PSYDTIPYDHTSPNANILSTRAETLTKLTTNNSNSKLLITHTANLLNKLPPKDFFSKYF 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           ++L         EL   LV+  + R    I  G F V G+ I+I        A+R+    
Sbjct: 128 LKLSPKMKFTTDELAMFLVENSFTRNASSIDAGEFAVRGEIIDIILPG--PKAYRIHFSW 185

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
             IE I EF   T    ++   + I   +  V    T+                 L   G
Sbjct: 186 GYIESIKEFDIDTQISTKSCRELIISPANEIVLNSETIGNFKNN----------YLRNFG 235

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  L        E + +       E            +    L +Y+ +   +F +
Sbjct: 236 VNHTDNPL-------YEAVISGRKFTGYEQLLPLFY-----DSCSNLIDYLNDPIFIFDN 283

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN-CLRPTTIVVSATPG 533
            S   I +    Y   +              +  +   L+F  +   L PT++  +A+  
Sbjct: 284 LSKQAILEFEHSYNDFYS-------------ARSEANKLKFNSFYPTLSPTSLYFTASEI 330

Query: 534 SWELEQCQGIIV 545
           +  LE+   I++
Sbjct: 331 TELLERKNNILL 342



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  T  ++   E+R++    + V   D +     +
Sbjct: 744 HVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRL-EVRTSVMPFDPVIIRDALLREHFR 802

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G R    V   +  ED+ + L +    + Y   H ++   +  E++ +   GKFD+LV  
Sbjct: 803 GGRSFYVVPRIKDIEDIEKQLKQIVPELSYKIAHGKMTPSKIDEVMSEFYAGKFDILVST 862

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI E   + I  AD  G  +    L Q  GR  R        YA     S + 
Sbjct: 863 TIIESGIDIAEANTMIIHKADMLGLSQ----LYQLRGRIGRGKMRG---YAYLTVASHKK 915

Query: 700 AIDETTRRREK 710
               + RR E 
Sbjct: 916 MTSHSLRRLEI 926


>gi|34581455|ref|ZP_00142935.1| transcription-repair coupling factor [Rickettsia sibirica 246]
 gi|28262840|gb|EAA26344.1| transcription-repair coupling factor [Rickettsia sibirica 246]
          Length = 1122

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 68/373 (18%), Positives = 125/373 (33%), Gaps = 56/373 (15%)

Query: 179 SGKTF-TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           + K+F T+    + +++  I+ A N+  A QLY +   F  +  + YF            
Sbjct: 9   AAKSFFTIDNFTKNLKQDFILSASNEEEALQLYKQALFFSSNENIYYF------------ 56

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERN----DCIVVSSVSCIYGIGSVESYSQM 293
            P  +T     +S N  I   R      L   N      ++  + + +  +   + +S+ 
Sbjct: 57  -PSYNTIPYDHTSPNANILSRRAETLIKLTTNNSNSNKLLITHTANLLNKLPPKDFFSKY 115

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            ++L         EL   LV+  + R  I I  G F V G+ I+I        A+R+   
Sbjct: 116 FLKLSPKMKFTTDELAMFLVENSFTRNAISIDVGEFAVRGEIIDII--LSGPKAYRIHFS 173

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
              IE I EF   T    ++   + I   +  V    T+                 L   
Sbjct: 174 WGYIESIKEFDIDTQISTKSCSELIISPANEIVLNSETIGNFKNN----------YLRNF 223

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
           G       L        E + +       E            +    L +Y+ +   +F 
Sbjct: 224 GVNHTDNAL-------YEAVISGRKFTGYEQLLPLFY-----DSCSNLIDYLNDPIFIFD 271

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN-CLRPTTIVVSATP 532
           + S   I +    Y   +              +  +   L+F  +   L PT++  +A+ 
Sbjct: 272 NLSKQAILEFEHSYNDFYS-------------ARSEANKLKFNSFYPTLSPTSLYFTASE 318

Query: 533 GSWELEQCQGIIV 545
            +  LEQ   I++
Sbjct: 319 ITELLEQKNNILL 331



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  T  ++   E+ ++    + V   D +     +
Sbjct: 732 HVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRL-EVHTSVMPCDPVIIRDALLREHFR 790

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G R    V   +  ED+ + L +    + Y   + ++   +  E++ +   GKFD+LV  
Sbjct: 791 GGRSFYVVPRIKDIEDIAKQLKQIVPELSYKIAYGKMTPSKIDEVMNEFYAGKFDILVST 850

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI E   + I +AD  G  +    L Q  GR  R        YA     S + 
Sbjct: 851 TIIESGIDIAEANTMIIHNADMLGLSQ----LYQLRGRIGRGKMRG---YAYLTVASHKK 903

Query: 700 AIDETTRRREK 710
               + RR E 
Sbjct: 904 MTSHSLRRLEI 914


>gi|39935729|ref|NP_948005.1| transcription-repair coupling factor [Rhodopseudomonas palustris
           CGA009]
 gi|39649582|emb|CAE28104.1| transcription repair coupling factor [Rhodopseudomonas palustris
           CGA009]
          Length = 1172

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 68/459 (14%), Positives = 137/459 (29%), Gaps = 69/459 (15%)

Query: 180 GKTFTMAKVIEAMQ-------------------RPAIVMAPNKILAAQLYSEFKNFFPHN 220
           GK  T A V E  +                       V+  +     QL    + F P  
Sbjct: 15  GKALTFANVAEGAEGLIIADLARAVAAKPKAPAVSLTVICRDGPRMQQLARSLEFFAPDL 74

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-----ERNDCIVV 275
            V  F             P  D       S +  I   R +    L      ++   ++ 
Sbjct: 75  EVLQF-------------PAWDCQPYDRVSPHAGILAQRVTTLAKLSRLTGSDKPLIVLT 121

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +  + +  +   E  +   + +  G+ V    +++ L    Y R       G + V G  
Sbjct: 122 TVNAAVQRVPVREIIAAQALSVAPGNVVPMDSIVAWLEHNGYSRASTVREAGEYAVRGGI 181

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +++FP+ L D   R   FG+ +E I  F   T + +  +  + +   S +     T+   
Sbjct: 182 LDLFPAGL-DQPVRFDFFGDQLESIRTFDAETQRTLHTMRGLDLVPVSEFQLVTETIRRF 240

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
                     R+  +   G      +L   ++              +E++          
Sbjct: 241 ----------RMGYVAAFGAPHPDDQLYAAVS-------EGRRHPGMEHWLPLF-----Q 278

Query: 456 EPPPTLFEYIPEDSLLFV-----DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
           E   TLF+Y+ + + + +     D +     QI+  Y                 P   D 
Sbjct: 279 ERMDTLFDYL-KGTPVAIEPQSEDAARERFKQIADYYDARREAMEQPGSGAIYKPLPPDR 337

Query: 511 RPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             L   EW        +   TP  + L      +++   R  G    P    S     E 
Sbjct: 338 LYLTDSEWTARLEGVALARLTP--FALPDDTSDVIDAGARA-GRNFAPERADSNVNVFET 394

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           +   +        ++++ + ++   + +   L +  +  
Sbjct: 395 LVAHVYALQAARKKVVIALWSEGSRDRMASMLKDHKLVA 433



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 96/261 (36%), Gaps = 38/261 (14%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + +  I  +  VD    +R+     + +   + +     +
Sbjct: 772  HVLTLSATPIPRTLQLAMTGVRDLSIIASPPVDRLA-VRTFVAPHDPLMIREALLRERYR 830

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       ++ ++L +    ++V   H ++      +I+     GKFD+L+  
Sbjct: 831  GGQAFYVVPRIDDLAEVKDFLDKHVPEMKVAVAHGQMPPAVIEDIMSAFYDGKFDILLST 890

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+          
Sbjct: 891  TIVESGLDIPNANTLIVHRADMFGLAQ----LYQLRGRVGRSKLRAYALFTLP------- 939

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                             +HNI  Q+ +  K+++ ++ +       ++        +L  +
Sbjct: 940  -----------------QHNITAQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLLGE 982

Query: 759  KGKAHLK----SLRKQMHLAA 775
            +   H+K     L +QM   A
Sbjct: 983  EQSGHIKEVGFELYQQMLEEA 1003


>gi|198282679|ref|YP_002219000.1| transcription-repair coupling factor [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198247200|gb|ACH82793.1| transcription-repair coupling factor [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 1116

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 94/309 (30%), Gaps = 41/309 (13%)

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
              QRP +++ PN     +   E++ F P           +    +   P  D       
Sbjct: 3   RQWQRPLLILLPNARDVEEWQREWRFFAPDLPAPLVFPDREILPYDRLAPPADATAT--- 59

Query: 250 SINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELL 309
                    R +   +L E     +    + +  +       Q    L +GD +  +   
Sbjct: 60  ---------RLATLATLPEWRGVCLAPLSAVLQRLPPRSFLDQHAFVLAVGDHLSPEGFR 110

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369
             L+   Y+        G     G  I++FPS    + +R+ +F   +E I  F P T +
Sbjct: 111 QRLIDAGYRNVSEVSEAGELAWRGGIIDLFPS-GSPLPYRIELFDRVVESIRAFDPETQR 169

Query: 370 KIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYD 429
            ++ VE + +               A++  +   + R      + +  E  R   R    
Sbjct: 170 TLQKVEGVSLLPAREVPVD----TAALQEFRSRFRAR---FSGDPQRAEIYRAASR---- 218

Query: 430 LEMLETTGSCQSIENYSRYLTGRNPGEPPPT--LFEYIPEDSLLFVDESHVTIPQISGMY 487
                   + Q  E+Y            P    L  + P D ++F+        +   + 
Sbjct: 219 ------GQAPQGAEHYLPLFF-------PECSHLLMHFPVDGVVFLPPGLEASARH--IR 263

Query: 488 RGDFHRKAT 496
           +    R   
Sbjct: 264 QDWQERYEE 272



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 65/188 (34%), Gaps = 13/188 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + ++ATP    L      + +  I  T        +R+     +D  V +       +G
Sbjct: 720 ILTLTATPIPRTLNLSLAGLRDLSIIAT-PPQRRQPVRTFVQIWDDATVIEACQRELHRG 778

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       R  E +   L       R    H ++   E   ++ D    +FD+L+   
Sbjct: 779 GQVYFLHNEVRDIERMAATLRRLLPEARLRVAHGQMPEGELEAVMLDFYHQRFDILLCTT 838

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+D P    + I  ADK G  +    L Q  GR  R+                  A
Sbjct: 839 IIESGIDNPHANTILINRADKFGLAQ----LHQLRGRVGRSHQRAYAYLFTPDL----RA 890

Query: 701 IDETTRRR 708
           + +  RRR
Sbjct: 891 MSDDARRR 898


>gi|238927163|ref|ZP_04658923.1| transcription-repair coupling factor [Selenomonas flueggei ATCC
           43531]
 gi|238884945|gb|EEQ48583.1| transcription-repair coupling factor [Selenomonas flueggei ATCC
           43531]
          Length = 1097

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 106/316 (33%), Gaps = 24/316 (7%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           +A+ +L +      +  ++ G  G+ K    A   +A  RP  V+   +        +  
Sbjct: 12  SAVRRLTEVFGRAAEQTMVYGAAGALKHAAAAASYDAAPRPLAVVTAGREALRGWQEDLT 71

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR--MRHSATRSLLERNDC 272
              P   +               +P  D          + ++R   R +    LL     
Sbjct: 72  ALLPEADIY-------------ELPELDRIDFAAPGAAKGLERSAQRMNILARLLRHEPI 118

Query: 273 IVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           IV++ +      G S   +S+  + L++G+ + +  L+  L    Y+        G F V
Sbjct: 119 IVLADIGAAAQKGLSTAEFSRAALSLRLGEQIPRDTLMERLTALGYEHVPEVENIGQFSV 178

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP- 390
            G  +++FP +      R+  F  +I+ + E+ P T + I+NV T  I            
Sbjct: 179 RGGIVDVFPINALS-PLRIEFFDTEIDSMREYDPQTKRSIKNVGTASIMPLRAADDHGEA 237

Query: 391 ---TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
              +   A      +   RL  +      +    +     +    +   G  +  E +  
Sbjct: 238 CFLSYLGAEGTSVFDEPSRL--MAALQDAVHEDAVRAARCFTWAEMTAAGM-EGHEVFIS 294

Query: 448 YLTGRNPGEPPPTLFE 463
            +    P   P TL +
Sbjct: 295 LMNRSFPACTPQTLID 310



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 74/195 (37%), Gaps = 19/195 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA----- 579
            + +SATP    L        +  +  T    PP E    ++ V +  D +   A     
Sbjct: 703 VLTLSATPIPRTLHMSLAGARDMSVIET----PPAERLPVQSYVVESSDAVMRGAIEREL 758

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G +I          + + E+L +   + R    H ++      +++ D   G +D+L+
Sbjct: 759 SRGGQIYFIYNRVESIDRMREHLLQLVPQARIASAHGQMSEDILEQVMMDFYEGHYDILL 818

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             +++  G+D+     + I DAD+ G  +    L Q  GR  R+       +     K  
Sbjct: 819 ATSIIENGIDVANANTIIIYDADRFGLSQ----LYQMRGRVGRSAKMAFAYFTYRRDK-- 872

Query: 698 QLAIDETTRRREKQL 712
              + E   +R + +
Sbjct: 873 --VLSEMAEKRLQAM 885



 Score = 38.9 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 21/184 (11%)

Query: 85  SMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQ 144
           S    + R  +++++      L  L  +    L  G  + P  +            F+  
Sbjct: 498 SADWARARAKAQKSVEDIADHLLELYAARR--LAKGHAFAPDDAGQRE--------FEEA 547

Query: 145 TDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMA 200
             Y  + DQ  AIA++   +   +   +LL G  G GKT      A           V+ 
Sbjct: 548 FPYQETDDQLRAIAEIKNDMESEKPMDRLLCGDVGFGKTEVAIRAAYKAAMDGYQVAVLV 607

Query: 201 PNKILAAQLYSEFKNFFPH-----NAVEYFVSYYDYYQPEAYVP--RTDTYIEKESSINE 253
           P  +LA Q Y  F   F       + V  F +  +  +    V   R D  I   + +N 
Sbjct: 608 PTTVLAQQHYQTFAARFADFAPKVDVVCRFRTLREQAETLRDVARGRVDILIGTHAILNR 667

Query: 254 QIDR 257
           +  R
Sbjct: 668 KRVR 671


>gi|281420665|ref|ZP_06251664.1| transcription-repair coupling factor [Prevotella copri DSM 18205]
 gi|281405438|gb|EFB36118.1| transcription-repair coupling factor [Prevotella copri DSM 18205]
          Length = 1137

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 17/231 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A+  L+           L G+  S      A +   M+R  + +  +   A   Y +
Sbjct: 15  QADALFDLMG--KKSVHSIFLQGLLCSSAPMFFASLQGKMRRSVLFVLDDADEAGYFYHD 72

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                    V +F S Y              Y +++++     + +R      L      
Sbjct: 73  LTQMMGQEKVFFFPSSYRRAVK---------YGQRDAAN----EILRTEVLARLSSGGHF 119

Query: 273 IVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           +VV+    +  +  + ++  + I++L +G  + Q +++ +L   + K  D     G F V
Sbjct: 120 LVVTYPDALAELVVAKQNLDERILKLTVGQQIAQTDVVHTLRDFELKETDYVYEPGQFAV 179

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
            G  ++++ S+  +  +R+  FG++I+ I  F   T         I+I   
Sbjct: 180 RGSILDVY-SYSCEYPFRIDFFGDEIDTIRTFDVETQLSQAKRTEIEIVPE 229



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 13/193 (6%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     I+R       P+         E + D IN    +  
Sbjct: 720 TLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIHTELVTFSSEVICDAINFEMSRNG 779

Query: 584 RILLTVLTKRMAEDLTEYLYERNIR---VRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           ++           +L + L E++I    V   H ++K  +  +II       +DVL+   
Sbjct: 780 QVYFVCDRISKLPEL-KMLIEKHIPDCRVAIGHGQMKPEDLEKIIMGFINYDYDVLLSTT 838

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+DI     + + DA   G     + L Q  GR  R+ N K   Y     KS   A
Sbjct: 839 IVENGIDISNANTIIVSDAHHFGL----SDLHQMRGRVGRS-NKKAFCYLMAPPKS---A 890

Query: 701 IDETTRRREKQLE 713
           +    RRR + LE
Sbjct: 891 LTPEARRRLEALE 903



 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           TVL  +  +   + L    +RV Y+     T E  E++  L+ GK D+L+G + L+ + +
Sbjct: 628 TVLAFQHYQTFKKRLEGMPVRVDYLSRARTTKETREVLDALKEGKIDILIGTHKLISKTV 687

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQ 673
              + GL+ I +  K G + +K  L Q
Sbjct: 688 KWHDLGLLVIDEEQKFG-VSTKEKLRQ 713


>gi|254527187|ref|ZP_05139239.1| transcription-repair coupling factor [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538611|gb|EEE41064.1| transcription-repair coupling factor [Prochlorococcus marinus str.
           MIT 9202]
          Length = 1169

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 92/544 (16%), Positives = 202/544 (37%), Gaps = 91/544 (16%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +L+K I    ++ ++ G +   K+  +A + +  ++  +++ PN  +A +          
Sbjct: 18  ELIKRISKNNELNVI-GSSRYAKSIILASIAKKEEKNILLICPNVEIAYKW--------- 67

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC---IVV 275
              + YF S  D      Y P T+       + +++I+  + +    L+++      IV+
Sbjct: 68  ---IGYFESINDKS--VLYYPPTEHLPYASINKSKEIEFSQLTVLSKLIKKKKNELNIVI 122

Query: 276 SSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           S+   +   + +     +  + L+ G  +E +EL + L    YK+ ++    G +   G+
Sbjct: 123 STERSLQPHLINKNLLIENKLDLQKGVRIEIQELANKLTLLGYKKDNVTSTEGFWSRRGE 182

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I+I+P + E    R+  F N IE+I E+ P T + + ++                    
Sbjct: 183 IIDIYPVNNE-FPVRLEFFDNIIEKIREYDPQTQKTLESINN------------------ 223

Query: 395 AMKYIKE--ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            ++ I+   +L +R           +   L +   ++ E +          N  RYL   
Sbjct: 224 -IEIIQAGVDLLIR----------DKLNNLSKNSIFNSEDINKN-------NLDRYLGII 265

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR--------KATLAEYGFRL 504
              + P  + +++  +++L +DE        +  +                 L     +L
Sbjct: 266 E--KKPSNIIDFLNRETILVIDELEDCKKFANNWFLDSESNFDNCAYELNENLKNNEIKL 323

Query: 505 PSCMDNRPLRFE-EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
                N  L+F+   N LR   ++       +E E  +  I  + +     ++      S
Sbjct: 324 -EAKPNLHLKFDYILNSLRNFNLI-----KFYEFE-SKVNIDNRFLLNDKRLN------S 370

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
               +  + ++IN   +   ++ +          L   L+E      +++    + +  E
Sbjct: 371 YSKNIGKLSNDINKNIKNNEKVWILSAQPLRTRTL---LFEHECNTNFLN---NSNDMDE 424

Query: 624 IIRDLRLGKFDVLVGINLLR-EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             + +      +L   N    EG  +P   +V I   DKE F +        I R  R+V
Sbjct: 425 AFKSISNSTPLILKNKNNYEIEGFYLPIWKVVLI--TDKELFSQQSLFNNVFIRRKKRSV 482

Query: 683 NSKV 686
           NS +
Sbjct: 483 NSNI 486



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 77/193 (39%), Gaps = 13/193 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-VEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +  T       ++   +   ++ +   IN    +G 
Sbjct: 764 VLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAINQELDRGG 823

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I   +      +     L      ++++  H ++   E    +     G+ D+++   +
Sbjct: 824 QIFYVLPRISDIDQAVNKLKIMFPSLKFIVAHGQMNETELENAMIAFNNGEVDLMICTTI 883

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITKSIQLA 700
           +  GLDIP+   + I D+ K G  +    L Q  GR  R+ V +   L+   I K     
Sbjct: 884 IESGLDIPKVNTIIIEDSHKFGLSQ----LYQLRGRVGRSGVQAHAWLFYPNINK----- 934

Query: 701 IDETTRRREKQLE 713
           I++  ++R K ++
Sbjct: 935 INDAAKQRLKAIK 947



 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAP 201
            Y P+ DQ  A+ ++   +   +   +L+ G  G GKT    + I       +  I++AP
Sbjct: 611 PYQPTPDQITAVEEIKSDMESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQVILLAP 670

Query: 202 NKILAAQLYSEFKNFFPH 219
             ILA Q +    N F  
Sbjct: 671 TTILAQQHWRTINNRFSP 688


>gi|84516196|ref|ZP_01003556.1| transcription-repair coupling factor [Loktanella vestfoldensis
           SKA53]
 gi|84509892|gb|EAQ06349.1| transcription-repair coupling factor [Loktanella vestfoldensis
           SKA53]
          Length = 1148

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 112/337 (33%), Gaps = 43/337 (12%)

Query: 170 VQLLLGVT-GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
              + G   G      +A++ +   +P   +A +    A + S    F P   V  F   
Sbjct: 6   HITVSGAPEGFDAKLILAELAK--GQPVCHIARDDKRLAAMQSALAFFAPGVPVFVF--- 60

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL---LERNDCIVVSSVSCIYGIG 285
                     P  D       S N  I   R +   +L   +     ++ +  +    + 
Sbjct: 61  ----------PAWDCLPYDRVSPNTDISAARMATLAALVHGMPGQFILLTTLSAATQRVP 110

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +  +  +      +G  +++  L + LV+  + +    +  G + V G  I+IFP   + 
Sbjct: 111 ARNTLREAAFTATVGKRLDEGALRAFLVRMGFTQSPNVMEPGDYAVRGGIIDIFPP-GQS 169

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +FG+ ++    F P T + +  +  +++   S  +     +    +  + E   
Sbjct: 170 GPVRLDLFGDVLDAARRFDPATQRTVEKLTEVELAPVSEVILDEAAITRFRQNYRIE--- 226

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                   G                E +        +E++  +       +   TLF+Y+
Sbjct: 227 ----FGAAGTD----------DPLYEAVSAGRKHAGVEHWLGFF-----QDDLETLFDYL 267

Query: 466 PEDSLLFVDES-HVTIPQISGMYRGDFHRKATLAEYG 501
           P+ ++   D+     + +   +      R   L + G
Sbjct: 268 PKATITLDDQIGPQRVARWESIADQYGTRMHALTQKG 304



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 108/290 (37%), Gaps = 49/290 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + ++ATP    L+     + +  +  T  +D    IR+  ++ + +   + +     +
Sbjct: 745 HVLTLTATPIPRTLQLSLSGVRDLSVIGTPPIDRLA-IRTYVSEFDTITVREALLREHYR 803

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMH--SEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +  + V      +++  +L E    V ++    ++   E  + +     GK+DVL+  
Sbjct: 804 GGQSFIVVPRITDMDEMEAFLREEVPEVTFISATGQMAAGELDDRMNAFYDGKYDVLLAT 863

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK   YA   TK  Q 
Sbjct: 864 TIVESGLDIPTANTMIVWRADMFGLSQ----LYQIRGRVGR---SKTRAYAYLTTKPRQK 916

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE-DAATTNISIDAQQLSLSKK 758
            +  T ++R +                  ++  ID +      A+ ++ I      L ++
Sbjct: 917 -LTTTAQKRLR------------------VLGSIDSLGAGFTLASQDLDIRGAGNLLGEE 957

Query: 759 KGKAHLK---SLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           +     +    L +QM                D+I  ++S      +DD 
Sbjct: 958 QSGQMREVGYELYQQMLE--------------DQINAIRSGAAEGIIDDG 993


>gi|329944345|ref|ZP_08292591.1| conserved domain protein [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328530569|gb|EGF57435.1| conserved domain protein [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 561

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 79/202 (39%), Gaps = 12/202 (5%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+      A +     +++ P + V    ++ +    E   PR DT  ++ S     
Sbjct: 97  PLLVVTATGREAEETALALRSYLPADDVAVMPAW-ETLPHERLSPRADTVAQRLSV---- 151

Query: 255 IDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           + R+ H      +      V + ++  I G+G +E        L  G +V  +E    L 
Sbjct: 152 LRRLAHPEEGGAIRVLVVPVRALLAPVIAGLGELEPV-----HLAPGLAVGLEETARRLE 206

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
              Y R D+   RG + V G  +++FP   E    RV  FG++I+E+S F     + I  
Sbjct: 207 AAAYTRVDMVESRGEYAVRGGILDVFPP-SEPRPVRVDFFGDEIDEVSSFAVADQRTIEA 265

Query: 374 VETIKIYANSHYVTPRPTLNTA 395
           +  +   A    V        A
Sbjct: 266 LSAVTATACRELVLTDTVRERA 287


>gi|330942650|gb|EGH45220.1| transcription-repair coupling factor [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 211

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 89/205 (43%), Gaps = 15/205 (7%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + G+  +  +A+   A +R  +++  +   A +L  E K F P   V +F          
Sbjct: 21  LPGATLSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFAPTLPVLHF---------- 70

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R ++   L E  +  +VV   + ++ +   +      
Sbjct: 71  ---PDLETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           + L +G  ++ + + + L    Y+  D     G F V G  I++FP     + +R+ +F 
Sbjct: 128 LVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFD 186

Query: 355 NDIEEISEFYPLTGQKIRNVETIKI 379
           ++IE +  F P T + I  VE++++
Sbjct: 187 DEIETLRTFDPDTQRSIDKVESVRL 211


>gi|332880692|ref|ZP_08448365.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332681326|gb|EGJ54250.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 1133

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 56/367 (15%), Positives = 114/367 (31%), Gaps = 48/367 (13%)

Query: 155 AAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQR----PAIVMAPNKILAAQL 209
            ++  L K +     +     G+  S      + V  A  +    P + +  +   A   
Sbjct: 14  KSVKALAKALQDGSARTIFAEGLCASAAPLLFSSVAAACPQVMACPYVFVLDDAEEAGYF 73

Query: 210 YSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE- 268
           Y +         V YF S +                 K    +   + +R      L   
Sbjct: 74  YHDLTQILGEQEVFYFPSSFRRAV-------------KFGQRDAANEILRTEVISRLSAG 120

Query: 269 -RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
            R   +V    + +  + S +   +  ++L  G+ V+   +  +L    ++R D     G
Sbjct: 121 HRPLFVVTYPEAVMEKVVSRQKLDEQTLRLHAGERVDITFVEETLRAFGFRRVDYVYEPG 180

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI-------- 379
            F V G  +++F S   +  +RV  FG++++ I  F   T       E I I        
Sbjct: 181 QFAVRGSILDVF-SFSSEWPYRVDFFGDEVDSIRTFEVQTQLSRDKQEEIVIVPELAGYV 239

Query: 380 ---YANSHYVTPRPTLNTAMKYIKEELKMRL--IELEKEGRLLEAQRLEQRITYDLEMLE 434
                 + ++ P   L     +   ++  R+       +  + E  R E       E L 
Sbjct: 240 QGKVPFTDFLPPETVLVMKDLFFLRDVADRVYADGFSAQALMDEQARTEMEEAERHEKLR 299

Query: 435 T-------TGSCQSIENYSRYLTGRNPGEPPPTLFEY-------IPEDSLLFVDESHVTI 480
                   +   + + ++ R   G  P   P     +         ++  L     H  +
Sbjct: 300 ADLMLVDGSALMKGMLDFRRVEVGNKPSATPQATVRFHLTAQPIFHKNFELVTRTFHEYL 359

Query: 481 PQISGMY 487
            +   +Y
Sbjct: 360 EKGYTLY 366



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 67/196 (34%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+  P        E+ +     E + + +N    +
Sbjct: 720 TLTLTATPIPRTLQFSLMGARDLSVIQTPPPNRYPVQTEVHTFSA--ELIAEAVNFEMSR 777

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++ +         DL   L++     R    H ++   E   II       +DVLV  
Sbjct: 778 NGQVFIVNNRISSLYDLEALLHKHVPDARVCVGHGQMPPEELENIIFGFVHYDYDVLVST 837

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              ++  
Sbjct: 838 TIIESGIDIPNANTIIINGAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLAAL-- 891

Query: 700 AIDETTRRREKQLEHN 715
                  RR  Q   N
Sbjct: 892 ---TPEARRRLQAIEN 904



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 4/101 (3%)

Query: 577 LAAQQGLRILL--TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            A  + + +L+  TVL  +  +  +  L    +RV Y+       +  EI+RDL  GK +
Sbjct: 615 CADNKQVAVLVPTTVLAYQHFQTFSSRLKGMPVRVDYLSRARSAAKTKEILRDLADGKIN 674

Query: 635 VLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++VG + L+ + +   + GL+ I +  K G + +K  L Q 
Sbjct: 675 IIVGTHKLIGKSVKFKDLGLLIIDEEQKFG-VATKEKLRQM 714


>gi|288928499|ref|ZP_06422346.1| transcription-repair coupling factor [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288331333|gb|EFC69917.1| transcription-repair coupling factor [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 1134

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 88/232 (37%), Gaps = 17/232 (7%)

Query: 153 QPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYS 211
           QP A A L K +         L G+  S      + + +   +  + +  +   A   Y 
Sbjct: 10  QPQA-AALDKFLADAAISRIFLQGMVASTAPVFFSGMAQRRPKTTLFVLQDADEAGYFYQ 68

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND 271
           +       N V +F S Y              Y +++++     + +R      L     
Sbjct: 69  DLVQLMGQNDVLFFPSSYRRAVK---------YGQRDAAN----EILRTEVLARLAAERA 115

Query: 272 CIVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             VV +   +  +  S +   +  ++L +G +++  +++ +L    ++  D     G F 
Sbjct: 116 TYVVCAPDALSELVVSKQRLDERTLRLSVGQTIDVVQMVKTLRAFDFREVDYVYEPGQFA 175

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           V G  ++I+ S+  ++ +R+  FG++I+ I  F           + ++I   
Sbjct: 176 VRGSIVDIY-SYSHELPFRIDFFGDEIDTIRTFDVENQLSKDKRQAVEIVPE 226



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     ++R       P+    A      V + IN    +  
Sbjct: 718 TLTMSATPIPRTLQFSLMGARDMSVMRTPPPNRHPIHTEIATFDGAFVAEAINFEMSRNG 777

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++           +L   + +     R +  H ++K  +    + D    ++DVL+  ++
Sbjct: 778 QVYFVNDRIANLPELANIIRKHVPDCRVVIAHGQMKPEDLENALIDFMNHEYDVLLSTSI 837

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + +  A K G     + L Q  GR  R+ N K   Y      S   A+
Sbjct: 838 IENGIDISNANTIIVNHAHKVGL----SDLHQMRGRVGRS-NRKAFCYLLAPPLS---AL 889

Query: 702 DETTRRREKQLE 713
               RRR + LE
Sbjct: 890 TPDARRRLEALE 901


>gi|325954433|ref|YP_004238093.1| transcription-repair coupling factor [Weeksella virosa DSM 16922]
 gi|323437051|gb|ADX67515.1| transcription-repair coupling factor [Weeksella virosa DSM 16922]
          Length = 1114

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 99/240 (41%), Gaps = 17/240 (7%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
             ++K+  + G  GS  +F +A++     R  +++  +K  AA   ++ +       V +
Sbjct: 20  EEKQKIH-IKGFLGSALSFAIAQLYLQTNRSILMVTDDKEEAAYWLNDLEALLNQEQVLF 78

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER--NDCIVVSSVSCIY 282
           + S Y               IE+ ++ N  I   R      L        IV  + +   
Sbjct: 79  YPSAYRTPYH----------IEETNNANVVI---RTEVLNQLTSHSSPKIIVAYADALTE 125

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            + + ++ S   +++K+G  +    +   L    +++ D     G F + G  I+IF S 
Sbjct: 126 KVITKKALSTNTLKIKVGTELGLDFIRDMLFSYNFRQVDFVNEPGEFSIRGGIIDIF-SF 184

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            ++  +R+SMFG+++E I  F   T   I   + IKI  N           + ++Y+ ++
Sbjct: 185 ADEHPYRISMFGDEVETIRSFDTSTQLSISTTKEIKIIPNLEDKQFDEKRISFLEYLHKD 244



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 8/168 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +  +I+       PVE        E + D I    Q+G 
Sbjct: 700 TLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVETNLIEFNEEAIRDAILYEMQRGG 759

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I       +  +++   +       R    H ++   +   I+ D   G++DVL+   +
Sbjct: 760 QIFFIHNRVQTLKEIAGMVQRLVPDARIATGHGQMDGKQLEAIMLDFIDGQYDVLISTTI 819

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           +  GLD+P    + I DA   G       L Q  GR  R+ N K   Y
Sbjct: 820 IESGLDVPNANTILINDAQNFGL----ADLHQMRGRVGRS-NRKAFCY 862


>gi|157413397|ref|YP_001484263.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9215]
 gi|157387972|gb|ABV50677.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9215]
          Length = 1169

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 59/372 (15%), Positives = 141/372 (37%), Gaps = 67/372 (18%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +L K I    ++ ++ G +   K+  +A + +  ++  +++ PN  +A +          
Sbjct: 18  ELTKRISKNNELNVI-GSSRYAKSIIIASIAKKEEKNILLICPNVEIAYKW--------- 67

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN----DCIV 274
              + YF S  D      Y P T+       + +++I+  + +    L+++     + I+
Sbjct: 68  ---IGYFESINDKA--VLYYPPTEHLPYASINKSKEIEFSQLTVLSKLIKKKKNELNIII 122

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
            +  S    + +     +  + L+ G  +E +EL + L    YK+ ++    G +   G+
Sbjct: 123 STERSLQPHLINKNLLIENKLDLQKGVRIEIQELANKLTMLGYKKDNVTSTEGFWSRRGE 182

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I+I+P + E    R+  F N IE+I E+ P T + + ++                    
Sbjct: 183 IIDIYPVNNE-FPVRLEFFDNIIEKIREYDPHTQKTLESINN------------------ 223

Query: 395 AMKYIKE--ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGR 452
            ++ I+   +L +R           +   L +   ++ E +          N  RYL   
Sbjct: 224 -IEIIQAGVDLLIR----------EKLNNLSKNSFFNSEDINKN-------NLDRYLGII 265

Query: 453 NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL-------AEYGFRLP 505
              + P  + +++ ++++L +DE        +  +                  +  +   
Sbjct: 266 E--KKPSNIIDFLNKETILVIDELEDCKKFANNWFLDSESNFDNCAYELNENLKNNYIKL 323

Query: 506 SCMDNRPLRFEE 517
               N  L+F++
Sbjct: 324 EAKPNLHLKFDD 335



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 77/193 (39%), Gaps = 13/193 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-VEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +  T       ++   +   ++ +   IN    +G 
Sbjct: 764 VLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAINQELDRGG 823

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I   +      +     L      ++++  H ++   +    +     G+ D+++   +
Sbjct: 824 QIFYVLPRISDIDQAVNKLKIMFPSLKFIVAHGQMNETDLENAMIAFNNGEVDLMICTTI 883

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITKSIQLA 700
           +  GLDIP+   + I D+ K G  +    L Q  GR  R+ V +   L+   I K     
Sbjct: 884 IESGLDIPKVNTIIIEDSHKFGLSQ----LYQLRGRVGRSGVQAHAWLFYPNINK----- 934

Query: 701 IDETTRRREKQLE 713
           I++  ++R K ++
Sbjct: 935 INDAAKQRLKAIK 947



 Score = 38.2 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAP 201
            Y P+ DQ  A+ ++   +   +   +L+ G  G GKT    + I       +  I++AP
Sbjct: 611 PYQPTPDQITAVEEIKSDMESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQVILLAP 670

Query: 202 NKILAAQLYSEFKNFFPH 219
             ILA Q +    N F  
Sbjct: 671 TTILAQQHWRTINNRFSP 688


>gi|154492199|ref|ZP_02031825.1| hypothetical protein PARMER_01833 [Parabacteroides merdae ATCC
           43184]
 gi|154087424|gb|EDN86469.1| hypothetical protein PARMER_01833 [Parabacteroides merdae ATCC
           43184]
          Length = 1167

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 90/232 (38%), Gaps = 18/232 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q AA+  LLK  +   +   L G+ GSG   T+A +    +   + +  +   A   Y +
Sbjct: 63  QVAALNTLLK--NKTSRNIFLKGLNGSGAAMTIASLFSKRRGSYVCVLNDLEDAGYFYHD 120

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER--N 270
                  + + +F S Y                 K   ++   + +R     +L +    
Sbjct: 121 LVQLTGGDGIYFFPSAYRRAI-------------KYGHVDPANEILRTEVLSTLQDPTAP 167

Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             IV    +    + S E   +  +++ +G+ ++   +   L +  +++ D     G + 
Sbjct: 168 FIIVTYPEALAEKVISREVLKENTLKISVGERLDNMFVSDVLDEYGFEQVDYVYEPGQYA 227

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           + G  +++F S   +  +R+  FGN++E I  F   T      +++I I   
Sbjct: 228 MRGSILDVF-SFSYEFPYRIDFFGNEVETIRSFDVETQLSKEKLDSIYIVPE 278



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+   R   + + + IN    +
Sbjct: 754 TLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEV--ERFNPDIIREAINFEMSR 811

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++       +   ++   +       R    H +++  +  +II D    ++DVL+  
Sbjct: 812 NGQVFFINNRIQNIYEMEALVKREVPDARIAVGHGQMEPEKLEKIILDFVNYEYDVLIAT 871

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +++  G+D+P    + I +A + G     + L Q  GR  R+              S+  
Sbjct: 872 SIVESGIDVPNANTIIINNAQQFGL----SDLHQLRGRVGRSNRKAFCYLLSPPLSSLTQ 927

Query: 700 AIDETTRRREKQLEHN 715
                  RR  Q   N
Sbjct: 928 -----EARRRLQAIEN 938


>gi|288917959|ref|ZP_06412318.1| transcription-repair coupling factor [Frankia sp. EUN1f]
 gi|288350614|gb|EFC84832.1| transcription-repair coupling factor [Frankia sp. EUN1f]
          Length = 1189

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 81/493 (16%), Positives = 150/493 (30%), Gaps = 78/493 (15%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           R  +V+   +  A  L     +      V  + S+ +    E   PR DT   + +    
Sbjct: 53  RTVLVVTATEREADDLTEALGSLLGAGRVAVYPSW-ETLPHERLSPRADTVGRRLAV--- 108

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
            + R+ H             VV+ +  +             V L  GDS + +E+ + LV
Sbjct: 109 -LRRLAHPGEDG--AEPLAAVVAPIRSVLQPQVARLGDLAPVALAKGDSADLEEVTARLV 165

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-- 371
              Y R D+   RG   V G  +++FP   E+   R+  FG+++E+I  F     + +  
Sbjct: 166 GIAYHRVDLVERRGEIAVRGGILDVFPP-TEEHPLRIEFFGDEVEDIRHFSVADQRALPE 224

Query: 372 ------------RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA 419
                       R    +        +        A          RL +        E 
Sbjct: 225 QGGAPEQGGAGPRPAPLLFAPPCRELLLTDDVRARA---------ARLAQ--------EH 267

Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES--- 476
            +L   +    + +      + +E  S  L           L + +P  S + V +    
Sbjct: 268 PQLVDML----DKIAQGIPVEGMEALSPVLVDEMTL-----LLDELPRGSRVLVCDPERV 318

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLP---SCMDNRPLRFEEWNCLRPTTIVVSATPG 533
                ++    +       ++A  G   P        R +     +         S +P 
Sbjct: 319 RSRATELVRTSQEFLDASWSVAALGGGAPIDLGAATYRSVAEVREHAAERGIPWWSVSPF 378

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV---YDEINLAAQQGLRILLTVL 590
           + E      I  +  +           +R A T + D      +I        R+LL   
Sbjct: 379 ASEAAGDDDIFGDDTV--------VASLRPAPTYLGDTARATADIKGWLADSWRVLLVTE 430

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
               A+ L E + E ++             R+    ++  G    +V    L +G   P 
Sbjct: 431 GHGPAQRLVEMMREADLGA-----------RLAADAEVVPGV--AIVTQAQLGQGFVSPT 477

Query: 651 CGLVAILDADKEG 663
             L  + + D  G
Sbjct: 478 LRLAVLTETDLAG 490



 Score = 40.8 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 13/150 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV---EDVYDEINLAAQ 580
            + +SATP    LE          IR    +D P E R    T V   +       +  +
Sbjct: 787 VLTMSATPIPRTLEMSITG-----IRELSTIDTPPEERHPVLTSVAAHDPSQVGAAIRRE 841

Query: 581 --QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVL 636
             +  ++          +     L E     R    H ++       ++      KFDVL
Sbjct: 842 LLREGQVFYIHNRVESIDRAAARLRELVPEARVATAHGQMNEDTLEGVMVSFWEKKFDVL 901

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLR 666
           V   ++  GLDI     + +  AD  G  +
Sbjct: 902 VCTTIVESGLDISNANTLIVERADNFGLSQ 931


>gi|294505877|ref|YP_003569935.1| transcription-repair coupling factor [Salinibacter ruber M8]
 gi|294342205|emb|CBH22983.1| Transcription-repair coupling factor [Salinibacter ruber M8]
          Length = 1298

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 94/251 (37%), Gaps = 18/251 (7%)

Query: 157 IAQLLKGIHSREKVQLLL--GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           +          ++   L   G  GS   F +  +      P  V+ P++  AA L S+ +
Sbjct: 175 LRAWTAEAQRGDRSPALHVNGAAGSLPAFLLYHLHREPGAPLCVLTPDEDAAAYLQSDLE 234

Query: 215 NFF--PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                P  A+    +          +  +   IE+              A + L E  + 
Sbjct: 235 QLVGEPDEAILRVPATQKTPYDPDQIADSTPLIERAD------------ALQRLAEGFEG 282

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           I+V+SV  +   +   ++  +  + ++ G+ +  + L   L++Q +   +     G F  
Sbjct: 283 ILVTSVPAVGELVPPPQAVQRETLTVENGEEIALEALADRLLEQDFSPVEFVEEPGEFAR 342

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  +++FP +      R+  FG+++  + EF P T + +  + T ++  N         
Sbjct: 343 RGGILDVFP-YAGTYPIRIDFFGDEVNGLREFDPQTQRSVSRLTTARLVPNLEREEAARG 401

Query: 392 LNTAMKYIKEE 402
                +Y+ +E
Sbjct: 402 SIALFQYLPDE 412



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 11/171 (6%)

Query: 525  TIVVSATPGSWELEQC-----QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
            T+ ++ATP    L+          ++E        ++  +         + + D I    
Sbjct: 883  TLTLTATPIPRTLQFSLLGARDLSLIETPPPNRQPINTEIHTFDE----DVIRDAIVYET 938

Query: 580  QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +G ++       +   ++ E +     N+RV   H ++   E  +++ D    K DVLV
Sbjct: 939  SRGGQVFFIHNRVKTIHEVAEMVRAMVPNVRVGVGHGQMSASELEDVMLDFVNEKLDVLV 998

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              +++  GLDI     + I  A +   L     L   +GR+ R     +++
Sbjct: 999  STSIIENGLDISNANTMIINHAGEHFGLSELHQLRGRVGRSQRKAFCHLLV 1049


>gi|312890454|ref|ZP_07749991.1| transcription-repair coupling factor [Mucilaginibacter paludis DSM
           18603]
 gi|311297224|gb|EFQ74356.1| transcription-repair coupling factor [Mucilaginibacter paludis DSM
           18603]
          Length = 1119

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 93/257 (36%), Gaps = 26/257 (10%)

Query: 157 IAQLLKGIHSREKVQLLL--------------GVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           I ++L+   + E+VQ L               G+ GS        +        + + P+
Sbjct: 3   IREILERYKTDERVQTLAKALNSVKHPRVQLRGLVGSSDAAMAVALYFLKHSHMLFILPD 62

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           +  A    S+ +N      +  F S Y     E   P +   + +   +NE         
Sbjct: 63  REEAGYFQSDLENLL-DKEILLFPSSYRK-PFEFTQPDSSNVLARAEVLNE--------- 111

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
                E    IV    +    +    S  +  +++ + + +    +   L++  ++R D 
Sbjct: 112 LNHTSEYGQLIVTYPEALAEKVIDRASLEKNTLEIGVTNKLSLDFINEFLIEYAFERVDF 171

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
               G F + G  ++IF S   D+ +RV  FG+ IE I  F   +   +  V+TI I  N
Sbjct: 172 VYSPGQFSIRGGIVDIF-SFSHDLPYRVEFFGDFIESIRTFEIESQLSVEQVKTITIVPN 230

Query: 383 SHYVTPRPTLNTAMKYI 399
                      + ++YI
Sbjct: 231 VQSKFLTENNISLLEYI 247



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 12/170 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L     G     II   P        E+     ++  + + +     +
Sbjct: 711 TLTLTATPIPRTLHFSLMGARDLSIISTPPPNRQPVVTELHVFNDKL--IKEAVEYEIDR 768

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++            L   + +   + R    H +++  +  +++      ++DVLV  
Sbjct: 769 NGQVFFIHNRVADLPQLGGMIKKLVPKARIGIAHGQLEGDDLEDVMLKFVSNEYDVLVAT 828

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            ++  GLDIP    + I  A   G     + L Q  GR  R+ N K   Y
Sbjct: 829 TIIEAGLDIPNANTIIINYAHMFGL----SDLHQMRGRVGRS-NKKAFCY 873


>gi|189501723|ref|YP_001957440.1| hypothetical protein Aasi_0272 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497164|gb|ACE05711.1| hypothetical protein Aasi_0272 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 1123

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 110/266 (41%), Gaps = 12/266 (4%)

Query: 157 IAQLLKGI-HSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           I +LL  I +S      L G+ GS      A + +      I +  +K  AA LY++  N
Sbjct: 16  IKELLNNICNSSHSFIRLKGLAGSLPAILGAALHQLNNFTQIFILQDKEAAAYLYTDLLN 75

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
                 V  + +       +A++   DT        NE + ++R S      + +  IV 
Sbjct: 76  LLGPQKVVLYPAIEYQTDSKAFL---DT--AANLMRNEILQQLRQS-----NKVSKIIVT 125

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
              + +  + S +S ++    ++  + +   E + +L+ + +++ D     G F + G  
Sbjct: 126 YPEAIVTKVISQDSLTKNSWSIQPKEKLVLSEFVDTLIDKGFEKVDFVYEAGQFAIRGGI 185

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+IF S+   + +RV + GN+IE I  F P        V+   + + +       T  + 
Sbjct: 186 IDIF-SYGSQLPYRVELLGNEIESIRLFNPSNQLSTEKVKEAILLSYTEPFNTTITYQSF 244

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQR 421
             Y+ EE  + L + E     L+ +R
Sbjct: 245 FDYLPEESVVWLKDYEMVINALKNKR 270



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 15/189 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G     II   P+        I +   ++  V D I+   Q+
Sbjct: 713 VLTLTATPIPRTLHFSLMGARDLSIIATPPSNRQPVQTSIHTFDKKI--VQDAIHYEVQR 770

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          +++   LY+     R+   H ++   +  + +     G +D+LV  
Sbjct: 771 GGQVFFVHNRINNIQEVANMLYKLVPEYRIGIAHGQMDGDQLEKKMLTFIAGGYDILVST 830

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           N++  GLDIP    + I D+   G     + L Q  GR  R+ N K   Y      S   
Sbjct: 831 NIIESGLDIPNANTIIINDSHMFGL----SDLHQMRGRVGRS-NKKAFCYLIAPPNS--- 882

Query: 700 AIDETTRRR 708
           ++ E  R+R
Sbjct: 883 SLTEEARKR 891



 Score = 44.3 bits (103), Expect = 0.078,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 18/172 (10%)

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
              Y    N      + F+Y+PE+S++++ +  + I  +         R   ++      
Sbjct: 228 LLSYTEPFNTTITYQSFFDYLPEESVVWLKDYEMVINALKNKREELNGRPQQISN----- 282

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-- 562
            S   +   + E    L             WE    +   VE   R     +  +E +  
Sbjct: 283 -SATSSTTEKVELDKILYEHIE-------DWEKNIRRFTCVEFGNRFYLESEEVIEYKAS 334

Query: 563 ---SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
              S   Q+  + + +    + GL  L+ V +    E L   L E +I+V++
Sbjct: 335 SQPSFNQQLSLLAENLQQNQKLGLENLILVESTSQFERLANMLEELDIKVQF 386


>gi|148260750|ref|YP_001234877.1| transcription-repair coupling factor [Acidiphilium cryptum JF-5]
 gi|326403946|ref|YP_004284028.1| transcription-repair-coupling factor [Acidiphilium multivorum
           AIU301]
 gi|146402431|gb|ABQ30958.1| transcription-repair coupling factor [Acidiphilium cryptum JF-5]
 gi|325050808|dbj|BAJ81146.1| transcription-repair-coupling factor [Acidiphilium multivorum
           AIU301]
          Length = 1144

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 73/497 (14%), Positives = 146/497 (29%), Gaps = 73/497 (14%)

Query: 172 LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
            + G         +A+         + +A +    A+L      F P   +  F      
Sbjct: 5   TVYGAPEGFDADLIARRAAEAG-TVLHIARDDARLARLEDALAFFAPAAEIIRF------ 57

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE---RNDCIVVSSVSCIYGIGSVE 288
                  P  D       S N  I   R +A   LLE       ++ +  + +       
Sbjct: 58  -------PAWDCLPYDRVSPNPAIVADRVAALARLLEPAKGTRIVLTTVNAAVQRTPPRA 110

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            ++     +  G +    +L   L ++ Y R    +  G F V G   +++PS  E    
Sbjct: 111 RFADASRTIAPGGAAPPDDLARFLEQRGYHRVGTVMEPGDFAVRGGIFDVWPS-GEPAPA 169

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+ +FG+ ++ +  F P T +    + ++     S       +++      +E      +
Sbjct: 170 RIDLFGDTVDTLRRFDPGTQRSGEALPSLTFRPASELPLDADSISRFRTGFRELFGAEAL 229

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPED 468
                                 E +        +E+++             T+F+Y P  
Sbjct: 230 -----------------TDPLYESVSEGRRHPGMEHFAPLFCATME-----TVFDYAP-G 266

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLA------EYGFRLPSCMDNRPLRFEEWNCL- 521
           + + +D  H      +  +          +      E  +R P       L     + L 
Sbjct: 267 AAISLD--HQAEEAAAARFEMIADHYEARSAPPRAGEAPYR-PVAPARLYLDRAGLDALL 323

Query: 522 --RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
             R  T+    + P   E  +  G     +    G+     E R                
Sbjct: 324 RARGATVFSPFSRPEGAEGVEAGGRPGAILASAQGIASVYEEFR----------LLAARW 373

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            + G R++L   +    + L   L +  +R   +  +     RI            VL+ 
Sbjct: 374 REAGRRVVLAAWSAGSRDRLAALLRDHGMRSIPI--DNAAEARIAQGDA-------VLLA 424

Query: 639 INLLREGLDIPECGLVA 655
           +  L  G    +  +VA
Sbjct: 425 VLGLERGYVADDLAIVA 441



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 13/187 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + ++ATP    L+     + +  +  T  VD    +R+     + +   + I     +
Sbjct: 742 HVLTLTATPIPRTLQLALTGVRDLSLITTPPVDRLA-VRTFIMPWDKLVIREAIARERFR 800

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +I   V      + + E L E   ++R    H  +   E   ++ +   GK DVL+  
Sbjct: 801 GGQIFCVVPHIEDIDRMRERLAEIAPDLRTATAHGRLPPTEIERVMTEFSEGKHDVLLAT 860

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA----DTITK 695
           N++  GLD+P    + I  AD  G  +    L Q  GR  R               T+  
Sbjct: 861 NIVESGLDMPAVNTILIWRADLFGLGQ----LYQLRGRVGRGKQRGYAYLTWPASHTLAA 916

Query: 696 SIQLAID 702
           S Q  ++
Sbjct: 917 SSQKRLE 923


>gi|49475638|ref|YP_033679.1| transcription repair coupling factor [Bartonella henselae str.
           Houston-1]
 gi|49238445|emb|CAF27673.1| Transcription repair coupling factor [Bartonella henselae str.
           Houston-1]
          Length = 1168

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 53/339 (15%), Positives = 114/339 (33%), Gaps = 37/339 (10%)

Query: 164 IHSREKVQLLL-GVTGSGKTFTMAKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           I       ++  G+T   + F +A++   +   +P + +  +      L        P+ 
Sbjct: 9   IPQNISAHMVFDGITDGFEAFALAQLSLKIAQNKPLVYVVRDGTKLTHLQQVLNFIEPNL 68

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC 280
            V  F ++ D    +   P       + S++   I  +RH+       R   I+ ++ + 
Sbjct: 69  PVFQFPAW-DCLPYDRVSPGIAVMARRLSTL-AHIANLRHN------PRAAIILTTANAI 120

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           +  +   E     ++  +IG       L+  L    ++R  +    G F V G  ++IF 
Sbjct: 121 MQKLPPHEMIETQVIYARIGQRTSMGHLIQFLEANGFERVTVVRDVGEFAVRGGILDIF- 179

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
           S ++    R+  FG+ +E I  F   T +         +++ S  +     +N       
Sbjct: 180 SSVDAEPLRLDFFGDTLETIRVFDSETQRTTHKRTEFFLHSMSEVILTPELINRFKSN-- 237

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
                    +   G       + Q+     E L        +E++  +       E   T
Sbjct: 238 --------YIRTFG-------VSQKKNMLYEALSQGRRFAGMEHWLPFFY-----EKLDT 277

Query: 461 LFEY---IPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
            F++   +P     F++E      ++   Y      K  
Sbjct: 278 FFDHCGNLPFVFEHFIEEVLTERYRLIEDYYDARKEKEH 316



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 68/194 (35%), Gaps = 19/194 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             + +SATP    L      + E       P   +     I    + V  + + +     
Sbjct: 770 HVLTLSATPIPRTLGLALSGVRELSLITTPPIDRMAVRTFIAPFDSLV--IRETLLREYY 827

Query: 581 QGLRILLTVLTKRM----AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +G +               E L  Y+ E    V   H ++   +  +I+     G++DVL
Sbjct: 828 RGGQSFYVCPRVSDLGFVEEYLKAYVPELKFVVA--HGQMPAGQLDDIMNAFYDGQYDVL 885

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +   ++  GLDIP    + +  A+  G      +L Q  GR  R+      L+     K 
Sbjct: 886 LSTTIIESGLDIPTANTLIVHRAEMFGL----AALYQLRGRVGRSKQRAYALFTFPSGKV 941

Query: 697 IQLAIDETTRRREK 710
           +  A D    RR K
Sbjct: 942 LTPAAD----RRLK 951


>gi|255536470|ref|YP_003096841.1| Transcription-repair coupling factor [Flavobacteriaceae bacterium
           3519-10]
 gi|255342666|gb|ACU08779.1| Transcription-repair coupling factor [Flavobacteriaceae bacterium
           3519-10]
          Length = 1138

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 115/320 (35%), Gaps = 34/320 (10%)

Query: 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPN 202
           ++  + P   Q     ++ + I  + +   + G  GS  +   A++    ++  + +  +
Sbjct: 7   IKETFLPDMLQNEFGKEIFENI-DQFRHLSVKGSAGSAPSIFAAELFVTRKKTVLFLIED 65

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
           K  A    +E ++      V YF             P T     +          +R   
Sbjct: 66  KEDALYATAEMEDLLGKENVLYF-------------PATHLAPYQIEKTQNANLVLRTDV 112

Query: 263 TRSL-LERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
              L   +   ++++  S +   +   E +  +  ++K+G+S++       L +  ++  
Sbjct: 113 LNKLNASKKPKVIIAPFSSLSEKVLRKEDFKAISHRIKVGESLDFDFTGELLQQFNFQLT 172

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D     G F V G  +++F S+  +  +R+S FGN+IE I  F   T      V   ++ 
Sbjct: 173 DFVSEPGEFSVRGGIVDVF-SYSNEEPYRISFFGNEIESIKTFNIETQLTNGKVNEFQLV 231

Query: 381 ANSHYVTPRPTLN-----------------TAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
           +N +Y      ++                  A + I +         E   + ++ Q   
Sbjct: 232 SNMNYAVSGSKVSLLGLLPNDSFVVSVNAILATRKISDFFTKADEYYEALNKDIKHQPPA 291

Query: 424 QRITYDLEMLETTGSCQSIE 443
           +    + E L+   + + I+
Sbjct: 292 ELFVSEEEFLKDIAAFKHID 311



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 76/192 (39%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +  +I+       PVE        E + D I+   Q+  
Sbjct: 727 TLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVETSIVGFSEEIIRDAISYEIQRDG 786

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +D+   +       + +  H +++  +    + D   GK+DVLV   +
Sbjct: 787 QVYFINNRIENLKDIAGLIQRLVPDAKVITGHGQMEGKQLERNVLDFMEGKYDVLVSTTI 846

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I DA + G       L Q  GR  R+ N K   Y  T    +  + 
Sbjct: 847 VESGVDVPNANTMFINDAQRFG----MADLHQMRGRVGRS-NRKAFCYLITPPFDMMTS- 900

Query: 702 DETTRRREKQLE 713
               R+R + +E
Sbjct: 901 --DARKRLEAIE 910


>gi|89068292|ref|ZP_01155702.1| transcription-repair coupling factor [Oceanicola granulosus
           HTCC2516]
 gi|89046209|gb|EAR52267.1| transcription-repair coupling factor [Oceanicola granulosus
           HTCC2516]
          Length = 1151

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 101/309 (32%), Gaps = 39/309 (12%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
             + G         +   +E    P I +A +    A + +    F P   V  F     
Sbjct: 7   ITVGGAPEGFDARLVLSELEKSGGPVIHVARDDKRMAAMQAALAFFAPDMPVVTF----- 61

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER---NDCIVVSSVSCIYGIGSV 287
                   P  D       S N  I   R +   +L+        ++ +  S    + + 
Sbjct: 62  --------PGWDCLPYDRVSPNADISAARMATLAALVHGMPERFVLLTTINSATQRVPAR 113

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           E       + ++GD +++  L   LV+  + +       G + + G  I+I+P   E   
Sbjct: 114 EVLKDAAFRARVGDRIDEAALRDFLVRMGFSQAPTVTEPGDYAIRGGIIDIYPP-GEIGP 172

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+ +FG+ ++    F   T +    +E I++   S  +     +    +  + E     
Sbjct: 173 VRLDLFGDVLDGARRFDAATQRTTEKLEVIELAPVSEVILDEAAITRFRQNYRLE----- 227

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                 G                E +      Q +E++          E   TLF+Y+P 
Sbjct: 228 --FGAAGSD----------DPLYEAVSAGRKHQGVEHWIGLFH-----ERLETLFDYLPA 270

Query: 468 DSLLFVDES 476
            S+   D+S
Sbjct: 271 ASVTLDDQS 279



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 12/188 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + ++ATP    L+     + E  I  T  VD    IR+  ++ +   V + +     +
Sbjct: 750 HVLTLTATPIPRTLQLSLSGVRELSIIGTPPVDRLA-IRTYVSEFDAVTVREALLRERYR 808

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       +   +L E+   V  +  H ++   E  + +     GKFDVL+  
Sbjct: 809 GGQCFFVVPRISDMAEAEAFLREQVPEVSVVTAHGQMAAGELDDRMNAFYDGKFDVLLAT 868

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK   YA   TK    
Sbjct: 869 TIVESGLDIPTANTMIVWRADMYGLSQ----LYQIRGRVGR---SKTRAYAYMTTKPRAR 921

Query: 700 AIDETTRR 707
             D+  +R
Sbjct: 922 LTDQAEKR 929



 Score = 44.7 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 18/188 (9%)

Query: 117 LKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLG 175
           L++  I TP          + +  F     Y  + DQ AAI Q+L+ + +     +L+ G
Sbjct: 577 LRHAPILTPPD----GLWEQFLARF----PYQETDDQLAAIEQVLEDMEAGTPMDRLVCG 628

Query: 176 VTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
             G GKT      A V         V+AP  +LA Q    FK  F    ++         
Sbjct: 629 DVGFGKTEVAMRAAFVAAMSGSQVAVVAPTTLLARQHAQSFKERFRGFPLKVRALSRFVS 688

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYS 291
           Q EA   R        +S +  I    H+     ++ R+  ++V      +G+G  E   
Sbjct: 689 QKEAAETRAGL-----ASGDVDIVVGTHALLSKQVKFRDLGLLVIDEEQRFGVGHKERLK 743

Query: 292 QMIVQLKI 299
           +M   + +
Sbjct: 744 RMRTDVHV 751


>gi|328465671|gb|EGF36887.1| excinuclease ABC subunit B [Lactobacillus rhamnosus MTCC 5462]
          Length = 140

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 54/76 (71%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F + + Y P+GDQP AIA+L KG    +K Q+LLG TG+GKTFTM+ +I  + +P ++++
Sbjct: 39  FDLVSPYKPAGDQPQAIAKLTKGFEEGKKAQILLGATGTGKTFTMSNIIANLNKPTLILS 98

Query: 201 PNKILAAQLYSEFKNF 216
            NK LA QLY EFK F
Sbjct: 99  HNKTLAGQLYGEFKEF 114


>gi|188583862|ref|YP_001927307.1| transcription-repair coupling factor [Methylobacterium populi
           BJ001]
 gi|179347360|gb|ACB82772.1| transcription-repair coupling factor [Methylobacterium populi
           BJ001]
          Length = 1200

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 77/509 (15%), Positives = 155/509 (30%), Gaps = 80/509 (15%)

Query: 188 VIEAMQRPAIVMAPNKILA---AQLYSEFKNFFPHNAVEY-----------FVSYYDYYQ 233
            I     P +   P+   A   A L     + F   AV             F +   +  
Sbjct: 36  AIRRGDSPTLASVPDGFDALVAADLARALSSTFEGPAVLVHVARDSGRSNAFQNALKFVA 95

Query: 234 PEAY---VPRTDTYIEKESSINEQIDRMRHSATRSLL------ERNDCIVVSSVSCIYGI 284
           PE      P  D       S N  I   R +A   L       E+   +  +  + +  +
Sbjct: 96  PEIEAMSFPAWDCQPYDRVSPNAAIAAQRMTALSRLTRSRSSEEKPRILCTTVNALVQRV 155

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
                 +       IG+ V   ++++ +    + R       G + V G  +++ P  L 
Sbjct: 156 PPRARVAVETFSAAIGNVVPMDKVVAWVEANGFLRTGTVRDTGEYAVRGGILDLSPPGL- 214

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
               R+  FG+ +E I  F P T + + ++ ++ +   S       T+            
Sbjct: 215 PNPIRLDFFGDTLESIRAFDPETQRTVGSLRSLDLVPMSEVQLTTETIRRF--------- 265

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
            R   L   G      RL + ++              +E++          +   TLF+Y
Sbjct: 266 -RQGYLSSFGAATRDDRLYETVS-------EGRRYAGLEHWMPLFY-----DGLDTLFDY 312

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +  D  +  D           +      R + + +Y     + + N       +  L P 
Sbjct: 313 LG-DVPMLFDP---------QVEEAAAERLSLIQDYFQAREAALKNPQSGVAPYKPLPPR 362

Query: 525 TIVVSATPGSWELEQCQGIIVEQ--IIRPTGLVDPPVEIRSARTQ-------------VE 569
            + +  TP  W+ +   G +       +P       ++  +   +              +
Sbjct: 363 ALYL--TPNEWKGKVEAGTVARLTPFAQPDSEERAVIDCGARAGRNFAPERADEAASVFD 420

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                I      G  ++L   +    + L   L +  ++      +   +     +  L+
Sbjct: 421 AAVAHIRDLQASGHHVILGSWSDGSRDRLCGVLTDHGLK------KPIEINSFTAVNALK 474

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILD 658
            G  DV V +  L  G  + +  +VA  D
Sbjct: 475 RGT-DVAVAVWGLEAGFTLDKLAVVAEGD 502



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 76/191 (39%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  T  VD    +R+  T  + +   + +     +
Sbjct: 799 HVLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLA-VRTFVTPFDPLLIREALLRERYR 857

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++  +L +    + V   H ++   +  +++     GK+DVL+  
Sbjct: 858 GGQAFYVVPRIEDLAEVKRFLDQEMPEVTVAVAHGQMAAGQLEDVMTAFYEGKYDVLLST 917

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G      +L Q  GR  R   SK   YA   T + + 
Sbjct: 918 TIVESGLDIPTANTLIVHRADMFGL----AALYQLRGRVGR---SKARAYALFTTPANRQ 970

Query: 700 AIDETTRRREK 710
              +  +R + 
Sbjct: 971 LTAQAEQRLKV 981


>gi|332885155|gb|EGK05406.1| hypothetical protein HMPREF9456_02607 [Dysgonomonas mossii DSM
           22836]
          Length = 1108

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 52/367 (14%), Positives = 113/367 (30%), Gaps = 50/367 (13%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            AI  LL    S+ K   + G+ GS  +     +        + +  +   A   Y +  
Sbjct: 18  PAIIDLL----SKHKDIYVKGLKGSSASMFATALFHKTDSCYLFVLNDLESAGYFYHDLN 73

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDC 272
                + V +F S Y                 K   I+   + +R      L   ++N  
Sbjct: 74  QILDSDKVLFFPSAYKRAI-------------KYGQIDAANEILRTEVMGQLQVEDKNLI 120

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           IV    +      + +   +  +Q+ + + +++  +   L    ++  D     G + + 
Sbjct: 121 IVTYPEALAEKAVAKDILKKNTIQMSVDEEIDRNFVSEMLDSFGFEYVDYVYEPGQYAIR 180

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           G  +++F S   +  +R+  FG+++  I  F   T      ++ I+I             
Sbjct: 181 GSILDVF-SFSSEYPYRIDFFGDEVSTIRTFDIETQLSKEKLKQIQIIP--DMQKSNMDR 237

Query: 393 NTAMKYIKEELKMRLIELEKEGRLLE------------------AQRLEQRITYDLEMLE 434
            + +K I ++  +   +       +E                    +L  R  YD  +  
Sbjct: 238 ESLLKLIPKDTVIAFKDFVWASDKVESVYNDSTILDNPEYEKDLQNKLTLRDEYDSLVKR 297

Query: 435 TTGSCQS----IENYSRYLTGRNPGEP------PPTLFEYIPEDSLLFVDESHVTIPQIS 484
                       E    + T   P           TL +Y+ +D  +++        +  
Sbjct: 298 FKHIHFGNKIQAEAVVEFKTDIQPSFHKNFDLISETLHKYLDKDYTIYILSDSEKQQKRL 357

Query: 485 GMYRGDF 491
                D 
Sbjct: 358 KSIFEDR 364



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 66/196 (33%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +    +  + + I     +
Sbjct: 699 TLTMTATPIPRTLQFSLMGARDLSAITTPPPNRYPIQTEVHTFDPLI--IREAIEFEMSR 756

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++       +   +L + +       R    H ++   +   II D    ++DVL+  
Sbjct: 757 NGQVFFINNRIKSIHELEDIIKREVPDARIAVGHGQMDPAKLESIIIDFVNQEYDVLLAT 816

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +++  G+DIP    + I +A   G     + L Q  GR  R+              ++  
Sbjct: 817 SIVESGIDIPNANTIIINNAQNFGL----SDLHQLRGRVGRSNKKAFAYLLAPPLHTL-- 870

Query: 700 AIDETTRRREKQLEHN 715
                  RR  Q   N
Sbjct: 871 ---TPEARRRLQAIEN 883


>gi|289642495|ref|ZP_06474639.1| transcription-repair coupling factor [Frankia symbiont of Datisca
           glomerata]
 gi|289507669|gb|EFD28624.1| transcription-repair coupling factor [Frankia symbiont of Datisca
           glomerata]
          Length = 1238

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 82/245 (33%), Gaps = 32/245 (13%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
              RP + +      A  L +   +    + V  F S+ +    E   PR DT   + + 
Sbjct: 51  RGGRPVLAVTATGREADDLAAALSSLIDPDTVAVFPSW-ETLPHERLSPRADTVGLRLAV 109

Query: 251 INEQIDRMRHSATRS---LLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
               + R+ H  +     L      +       + G+G +E        L +GDS +  E
Sbjct: 110 ----LRRLAHPDSTGRPPLSVVVASVRAVLQPQVAGLGDLEPV-----TLAVGDSADLGE 160

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           ++  LV   Y R D+   RG   V G  +++FP   E+   RV  FG+++E+I  F    
Sbjct: 161 VVDRLVGVAYHRVDLVERRGEIAVRGGILDVFPP-TEEHPLRVEFFGDEVEDIRPFSVAD 219

Query: 368 GQKI-------------RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
            + +                  +        +   P    A      EL     EL    
Sbjct: 220 QRALSGPSDDQNSRDRRDGRRQLFAPPCRELLLTPPVRARA-----RELAQAHPELLDML 274

Query: 415 RLLEA 419
             +  
Sbjct: 275 DRIAD 279



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 50/152 (32%), Gaps = 17/152 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--------IRSARTQVEDVYDEIN 576
            + +SATP    LE          IR    +D P E        +  +  +   V   I 
Sbjct: 832 VLTMSATPIPRTLEMSITG-----IRELSTIDTPPEERHPILTFVGPSDNR--QVAAAIR 884

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
               +  ++          +     L +     R    H ++      +++      KFD
Sbjct: 885 RELLREGQVFFIHNRVESIDAAAARLRDLVPEARVATAHGQMGEDALEQVMVAFWEKKFD 944

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           VLV   ++  GLDI     + +  AD  G  +
Sbjct: 945 VLVCTTIVESGLDISNANTLVVERADVFGLSQ 976


>gi|282881355|ref|ZP_06290034.1| transcription-repair coupling factor [Prevotella timonensis CRIS
           5C-B1]
 gi|281304761|gb|EFA96842.1| transcription-repair coupling factor [Prevotella timonensis CRIS
           5C-B1]
          Length = 1164

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 55/328 (16%), Positives = 115/328 (35%), Gaps = 38/328 (11%)

Query: 154 PAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           P A   L K +  +  K   L G+  S      A +   +Q+  + +  +   A   Y +
Sbjct: 14  PQA-GALRKALEDKSVKTVFLQGLVASAAPMLFAGMAGKLQQTILFVLQDADEAGYFYHD 72

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                 +  V YF S Y              Y +++++     + +R      L      
Sbjct: 73  LIQVMGNQQVLYFPSSYRRAIK---------YGQRDAAN----EILRTEVLSKLSSGEPL 119

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +V+S   +   + S +   +  +Q+ +G +V+ + L  SL   ++   D     G F V
Sbjct: 120 YIVASPESLCEWVVSKQKLEERTLQVTVGQTVDMQTLKKSLRAFEFHEVDYVYEPGQFAV 179

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN-SHYVTPRP 390
            G  ++++ S+  +  +R+  FG++++ I  F         + E ++I    S     R 
Sbjct: 180 RGSIVDVY-SYSCEWPYRIDFFGDEVDTIRTFDVQDQLSKEHKEQVQIVPKLSEMKEDRV 238

Query: 391 TLNTA------------------MKYIKEE-LKMRLIELEKEGRLLEAQR-LEQRITYDL 430
                                  ++ I  E    ++++ + EG     QR L      + 
Sbjct: 239 PFLQLLPSTALLVMQDFTFVHDTIERIYNEGFAKQVMQEQLEGATEVEQRELMHAWQKEQ 298

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPP 458
           +++      Q +  + R   G      P
Sbjct: 299 QLISGRQFLQDMAGFKRIQFGLQSDMTP 326



 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 72/179 (40%), Gaps = 14/179 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     I+R       P+         E + D IN    +  
Sbjct: 751 TLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIHTEIGTFGHEIITDAINFEMSRNG 810

Query: 584 RILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++   V  +      + + + +Y+ +  + +   H ++   +   ++ D     +DVL+ 
Sbjct: 811 QV-YFVNDRISTLPEIEKVILKYVPDCRVAIG--HGQMPPEKLENVLIDFMNHDYDVLLS 867

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            +++  G+DI     + I +A + G     + L Q  GR  R+ N K   Y     KS+
Sbjct: 868 TSIIENGIDISNANTIIINNAHRIGL----SDLHQMRGRVGRS-NRKAFCYLLAPPKSV 921



 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           TVL  +  +   E L    + V Y+       +  +++ DL  G+ D+++G + LL + +
Sbjct: 659 TVLAFQHYKTFKERLRGMPVNVDYLSRARTAKQSRQVLEDLAAGRIDIIIGTHKLLGKSV 718

Query: 647 DIPECGLVAILDADKEGFLRSKTSL 671
           +  + GL+ I +  K G    +   
Sbjct: 719 EWHDLGLLIIDEEQKFGVSTKEKLR 743


>gi|227548210|ref|ZP_03978259.1| possible transcription-repair coupling factor [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079684|gb|EEI17647.1| possible transcription-repair coupling factor [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 1191

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 89/520 (17%), Positives = 167/520 (32%), Gaps = 81/520 (15%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +  LL  I   +    L G+  + +++  A +   +  P +++      A  L +E    
Sbjct: 21  LKGLLSNI--GQDELHLTGIDQT-RSWAAAALSRQV--PVLLVTATGHEAEDLAAELAAL 75

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V YF +  +    E   P  D    +   +        H A + ++     +   
Sbjct: 76  IGPEKVGYFPAL-ETLPHERLSPAADVVGRRSKVL--------HDAPQVIVAAARAVCQP 126

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
            +  I  I            +  G   +  +L  S+    Y+  D+   RG F   G  I
Sbjct: 127 VLPAIDPIV-----------IARGSEYDFTQLTESIAHFAYEHVDMVAKRGEFATRGGLI 175

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++FP+  E    R+  +G+++ +I  F     + I  V+T++++     +        A 
Sbjct: 176 DVFPTTAE-HPVRIEFWGDEVTDIRTFAVADQRGIDEVDTVELFPARQLLIDASVAARA- 233

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
               +EL     +     ++L               +        +E     LT +    
Sbjct: 234 ----DELARAHPQNATLVQML-------------TRISQGHHADGMEALIPALTEKPFRV 276

Query: 457 PPPTLFEYIPEDSLLFV---DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM---DN 510
            P  L    P+ S++ V   ++    I  +    +         A  G + P  +   D 
Sbjct: 277 LPELL----PKGSVVLVTAPEKVRARIEDLEATDKEFLEAGWEAAAMGAQGPVAVEGLDV 332

Query: 511 RPLRFEEWNCLRPTTI------VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
               +  +  LR +T+         A PG +  +    + +E    P    DP       
Sbjct: 333 SASSYRSFESLRASTLASGNSWWTFAPPGMFAADDATTLPLEFEPAPAPKGDPKA----- 387

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVL-TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              +E ++  + L  Q        V   K   E   E L E  I  R + S+        
Sbjct: 388 ---IEQLFATVKLHVQSNNGTAAFVAPAKGTVERFAERLREHGISAR-IASD-------- 435

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
               L      V +   L   GL +P   +V I + D  G
Sbjct: 436 ---GLEPVTGQVTLYQALSHAGLVLPGPNMVVITETDVTG 472



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + ++ATP    LE     I E     T +  PP +     T V   ED      +  + 
Sbjct: 779 VLTMTATPIPRTLEMSLTGIREM----TSITTPPEDRHPVLTYVGPQEDKQIAAAIRREL 834

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +I          E     + +     R +  H ++      + ++     ++DVLV
Sbjct: 835 LRDGQIFYIHNKVADIEKAARRVRDLVPEARVVVAHGQMSEQLLEQTVQGFWNREYDVLV 894

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + + +A   G  +    L Q  GR  R+ +     +     K  
Sbjct: 895 CTTIVETGLDIANANTLIVENAQNMGLSQ----LHQLRGRVGRSRDRAYAYFLYPKDK-- 948

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET+  R   +  N    
Sbjct: 949 --TLTETSYDRLATIAQNNDLG 968


>gi|255262960|ref|ZP_05342302.1| transcription-repair coupling factor [Thalassiobium sp. R2A62]
 gi|255105295|gb|EET47969.1| transcription-repair coupling factor [Thalassiobium sp. R2A62]
          Length = 1151

 Score =  114 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 116/346 (33%), Gaps = 56/346 (16%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           ++L G      VQL+L              +     P   +A +      + +    F P
Sbjct: 8   RVLGGAPEGFDVQLIL------------AEVARSNAPVCHVARDDKRLEAMRAALAFFAP 55

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL---LERNDCIVV 275
              V  F             P  D       S N  +   R +   +L   +  +  ++ 
Sbjct: 56  DMPVIVF-------------PGWDCLPYDRVSPNADVSAQRMATLAALTHDMPSHYVLLT 102

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +  +    +   +   +   + ++GD +++K L + LV+  + +       G + V G  
Sbjct: 103 TLNAGTQRVPGRDVLREASFKAQVGDRIDEKALRAFLVRMGFVQTPTVTEPGDYAVRGGI 162

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+++P   +    R+ +FG+D++    F P T +    ++ I++   S  +     +   
Sbjct: 163 IDVYPP-GDSGPVRLDLFGDDLDGARRFDPATQRTTEKLDLIELAPVSEVILDEAAITRF 221

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
            +  + E           G                E +      Q +E++  +   R   
Sbjct: 222 RQTYRIE-------FGAAGTD----------DPLYEAVSAGRKHQGVEHWMGFFYDRLE- 263

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMY---RGDFHRKATLA 498
               T+F+++P   +    +  VT  +I+           R+  LA
Sbjct: 264 ----TIFDFLP--GVTITLDDQVTPSRIARWESIADQYHARREALA 303



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 13/189 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + E  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 747 HVLTLTATPIPRTLQLSLSGVRELSIIGTPPVDRLA-IRTYVSEFDTITLREALLREHYR 805

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ ++L      V Y+  + ++   E  + +     GK+DVL+  
Sbjct: 806 GGQSFFVVPRISDLPEIEDFLKSEVPEVSYIQANGQLAAGELDDRMNAFYDGKYDVLLAT 865

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK   YA   TK  Q 
Sbjct: 866 TIVESGLDIPTANTMIVHRADMFGLSQ----LYQIRGRVGR---SKTRAYAYMTTKPRQK 918

Query: 700 AIDETTRRR 708
            + +T  +R
Sbjct: 919 -LTQTAEKR 926


>gi|172040264|ref|YP_001799978.1| transcription-repair coupling factor [Corynebacterium urealyticum
           DSM 7109]
 gi|171851568|emb|CAQ04544.1| transcription-repair coupling factor [Corynebacterium urealyticum
           DSM 7109]
          Length = 1249

 Score =  114 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 81/215 (37%), Gaps = 11/215 (5%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
           A   P +V+      A  L  + K       VE   ++ +    E   P  +T  ++   
Sbjct: 68  AQHAPVLVITATARQAEDLTEQLKAMLGDE-VELMPAW-ETLPHERISPNVETVSQRM-- 123

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV--QLKIGDSVEQKEL 308
             + + R+       L E +  I V        +  ++     +      +   V+ +++
Sbjct: 124 --KVLRRLHRQTAGELGESDTHIRVVVAPVRTLVQPIQDSLGAVTPVHFAVDQEVDFEQI 181

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
              LV++ Y   D+   RG F V G  +++FP+  E +  RV  +G+++ +I  F     
Sbjct: 182 QHELVERGYSAVDVVAKRGHFAVRGGILDVFPATGE-LPVRVEFWGDEVSDIRPFSVGDQ 240

Query: 369 QKI--RNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
           + I    ++ + +Y     +        A +  KE
Sbjct: 241 RTIPGVELDEVTVYPARELLITDSVATRAGQLAKE 275



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 72/202 (35%), Gaps = 19/202 (9%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
             + +SATP    LE     I E     + ++ PP +     T V   ED +    +  + 
Sbjct: 833  VLTMSATPIPRTLEMSMAGIREM----STILTPPQDRHPVLTYVGAQEDKHVAAAIRREL 888

Query: 581  -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
             +  ++       +  E   E++       R +  H ++   +    +      +FD+LV
Sbjct: 889  LRDGQVFYIHNRVKSIEKAAEHIRSLVPEARVVVAHGQMSEEQLETTVEGFWNREFDILV 948

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  GLDI     + + +A   G  +    L Q  GR  R+       +     +  
Sbjct: 949  CTTIVETGLDISNANTLIVENAHHMGLSQ----LHQLRGRVGRSRERAYAYFLYPKGE-- 1002

Query: 698  QLAIDETTRRREKQLEHNKKHN 719
               + ET+  R   +  N +  
Sbjct: 1003 --VLTETSYDRLSTIAQNNELG 1022


>gi|1149714|emb|CAA60243.1| uvrB [Clostridium perfringens]
          Length = 87

 Score =  114 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 58/84 (69%), Positives = 73/84 (86%)

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L  +FK FFP N VEYFVSYYDYYQPEAYVP+TDT+IEK++SIN++ID++RHSAT +LLE
Sbjct: 4   LIVKFKEFFPDNIVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSALLE 63

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQ 292
           R D I+V+SVSCIYG+G+ E Y +
Sbjct: 64  RRDVIIVASVSCIYGLGNPEEYKK 87


>gi|320537605|ref|ZP_08037541.1| transcription-repair coupling factor [Treponema phagedenis F0421]
 gi|320145523|gb|EFW37203.1| transcription-repair coupling factor [Treponema phagedenis F0421]
          Length = 1148

 Score =  114 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 62/473 (13%), Positives = 149/473 (31%), Gaps = 69/473 (14%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+        ++     + G +G    F + + ++  +   I++ P +     + ++  
Sbjct: 15  KAMQTARAQFEAQTFPYTVRGSSGGLDAFVLFEYVKTFRDSIILVVPTEKEIETVRADLD 74

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
                  V  +      Y+P   +P       + + +  ++  +         E     +
Sbjct: 75  VSGLTAEVLPWWGSIA-YRP---IPNAAPVFAERAQVLSELASLS-------KESKKIFI 123

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +   S +  +   E    +   + +G +++   +   L++  Y R     +RG F + G+
Sbjct: 124 IPQRSFLTPVPPKEYIKTLCKHVSVGMAIDTVSISEQLIRWGYTRVPRVSLRGEFALRGE 183

Query: 335 SIEIFPS---HLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            ++I          +A+R+    + IE+I  F   +   + +  ++ +Y     +     
Sbjct: 184 VLDICTGANTGSAQIAYRIVFDFDTIEKIKSFDLSSQATLDDFSSLMLYPMKEVLWDDER 243

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
               +  ++E L   L E  ++   +            +E L      +  E +      
Sbjct: 244 ----IDCLEENLAA-LPEFTEDALKI------------IEELRIKRGFEGEEIFYPLCF- 285

Query: 452 RNPGEPPPTLFEYIPED----SLLFVDESHVTIPQISGMY-----------RGDFHRKAT 496
               + P ++ +YI  D      L  D        +   Y                RK  
Sbjct: 286 ----QKPASVLDYIDSDSVSVFYLDFDRQKNAAEVLEREYIGLYKKARQALDESQRRKTL 341

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           L EY            L F   +     ++    T    E E+       +         
Sbjct: 342 LTEY-----PEPHRILLNFTAVHSAYRRSLYF-RTIAQAEPEETTVSFNSEPP------- 388

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
                RS    +  + +E+    + G +I +   ++  A  L+E L +  + +
Sbjct: 389 -----RSFFGNIVYLKEELEHLLKDGWKIWVFAESENQALRLSEILKDFAVDI 436



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 66/187 (35%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP-PVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      I +  +  T   +  P+E        E V   I    ++G 
Sbjct: 759 CLALSATPIPRTLHMSLLKIRDMSLLTTPPQNRRPIETVIQEFDPEKVAAAIRQEVERGG 818

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          ++    L      + +   H ++ + E  +I +   +G F VL+   +
Sbjct: 819 QVFYLHNRVETLDETARMLQNLVPEVLIDSAHGQMNSDELEDIFKRFNMGGFHVLIATTI 878

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I  AD  G     + L Q  GR  R+                  A+
Sbjct: 879 IENGIDIPNANTIIIDRADMYG----VSQLYQLRGRVGRSDKKAYAYLLYPKD----RAL 930

Query: 702 DETTRRR 708
            E   +R
Sbjct: 931 SEIAMKR 937


>gi|304383034|ref|ZP_07365510.1| transcription-repair coupling factor [Prevotella marshii DSM 16973]
 gi|304335817|gb|EFM02071.1| transcription-repair coupling factor [Prevotella marshii DSM 16973]
          Length = 1143

 Score =  114 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 107/314 (34%), Gaps = 40/314 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A+  L      R     L G+TGS      A ++E + +  + + P+   A   Y +
Sbjct: 15  QSTALTDLFA--DKRITTIRLDGLTGSAPAMLFAGLMEEITQTLVFVLPDLDEAGYFYHD 72

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND- 271
                    V +F S Y                 K    +   + +R      +  +   
Sbjct: 73  LTQLLGQENVLFFPSSYRRAV-------------KYGQHDPANEILRTEVLSRIATKRTE 119

Query: 272 --CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
              IV    +    + S    +Q ++ L+ G S++   L ++L    +   D     G F
Sbjct: 120 ALYIVTYPEAMGEKVVSSSQLNQHMMTLRTGMSIDVITLGTTLRDLGFTETDYVYEPGQF 179

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
            + G  ++I+ S+  +  +R+  FG++IE I  F            +++I      V   
Sbjct: 180 ALRGSILDIY-SYSCEFPFRIDFFGDEIETIRTFNVEDQLSKEQKNSVEIVPELSAVKTE 238

Query: 390 P------------TLNTAMKYIKEELK---------MRLIELEKEGRLLEAQRLEQRITY 428
                         +  +++YI++ ++           L E  +     E Q+  + I  
Sbjct: 239 KIPLTDFLPSDSIIVAKSIRYIQDRIERIYRDGFSSQALAERLEGIPEQERQQRVEEIQQ 298

Query: 429 DLEMLETTGSCQSI 442
           + + L  +     I
Sbjct: 299 EFQFLTASQFINGI 312



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 70/188 (37%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     I+R       PV    A    + +YD I     +  
Sbjct: 731 TLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPVCTEIATFNDDAMYDAIEFEMSRNG 790

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +  +        +++ + + +     R +  H ++       +I       +DVL+   +
Sbjct: 791 QTYVVNNNIAQLQNIADSIVQHIPDCRVVIGHGQMSPSRLEAVIMGFMNHDYDVLLSTTI 850

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I  A   G     + L Q  GR  R+ N K   Y   I   +    
Sbjct: 851 IENGIDIPNANTIIIRGAQHFGL----SDLHQMRGRVGRS-NRKAFCYL--IAPPLVTVN 903

Query: 702 DETTRRRE 709
           +E  RR E
Sbjct: 904 NEARRRLE 911



 Score = 37.8 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           TVL  +     +E L    +RV Y+       +   I+ DL  GK D+LVG + L+ + +
Sbjct: 639 TVLAFQHYRTFSERLKLFPVRVDYLSRARTASQMKSILEDLAAGKIDILVGTHKLVSKNV 698

Query: 647 DIPECGLVAILDADKEGFLRSKTSL 671
              + GL+ I +  K G    +   
Sbjct: 699 VWKDLGLLVIDEEQKFGVSTKEKLR 723


>gi|330996173|ref|ZP_08320063.1| transcription-repair coupling factor [Paraprevotella xylaniphila
           YIT 11841]
 gi|329573677|gb|EGG55268.1| transcription-repair coupling factor [Paraprevotella xylaniphila
           YIT 11841]
          Length = 1133

 Score =  114 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 77/235 (32%), Gaps = 21/235 (8%)

Query: 155 AAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQR----PAIVMAPNKILAAQL 209
            ++  L K +     +     G+  S      + +     +    P + +  +   A   
Sbjct: 14  KSVKALAKALQDGSVRTIFAEGLCASAAPLLFSSLAATCPQVMACPYVFVLDDAEEAGYF 73

Query: 210 YSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER 269
           Y +         V YF S +                 K    +   + +R      L   
Sbjct: 74  YHDLTQILGEQEVFYFPSSFRRAV-------------KFGQRDAANEILRTEVISRLSAG 120

Query: 270 NDC--IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
           +    +V    + +  + S +   +  ++L   + V+   +  +L    ++R D     G
Sbjct: 121 HCPLFVVTYPEAVMEKVVSRQKLDEQTLRLHASERVDITFVEETLRAFGFRRVDYVYEPG 180

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
            F V G  +++F S   +  +RV  FG++++ I  F   T       E I I   
Sbjct: 181 QFAVRGSILDVF-SFSSEWPYRVDFFGDEVDSIRTFEVQTQLSRDKQEEIVIVPE 234



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 68/196 (34%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+  P        E+ +     E + + +N    +
Sbjct: 720 TLTLTATPIPRTLQFSLMGARDLSVIQTPPPNRYPVQTEVHTFSA--ELIAEAVNFEMSR 777

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++ +         DL   L++     R    H ++   E  +II       +DVLV  
Sbjct: 778 NGQVFIVNNRISSLYDLEALLHKHVPDARVCVGHGQMPPEELEKIILGFVNYDYDVLVST 837

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              ++  
Sbjct: 838 TIIESGIDIPNANTIIINGAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLAAL-- 891

Query: 700 AIDETTRRREKQLEHN 715
                  RR  Q   N
Sbjct: 892 ---TPEARRRLQAIEN 904



 Score = 38.5 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 4/101 (3%)

Query: 577 LAAQQGLRILL--TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            A  + + +L+  TVL  +  +  +  L    +RV Y+       +  +I++DL  GK +
Sbjct: 615 CADNKQVAVLVPTTVLAYQHFQTFSSRLKGMPVRVDYLSRARSAAKTKDILKDLADGKIN 674

Query: 635 VLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++VG + L+ + +   + GL+ I +  K G + +K  L Q 
Sbjct: 675 IIVGTHKLIGKSVKFKDLGLLIIDEEQKFG-VATKEKLRQM 714


>gi|157825985|ref|YP_001493705.1| transcription-repair coupling factor [Rickettsia akari str.
           Hartford]
 gi|157799943|gb|ABV75197.1| Transcription-repair coupling factor [Rickettsia akari str.
           Hartford]
          Length = 1121

 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 123/372 (33%), Gaps = 57/372 (15%)

Query: 180 GKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYV 238
            K+F  +    + +++  I+   N+  A QLY +   F  +  + YF             
Sbjct: 10  AKSFFVIDNFTKNLKQDFILSVNNEEEALQLYKQALFFSSNENIYYF------------- 56

Query: 239 PRTDTYIEKESSINEQIDRMRHSATRSLLERND---CIVVSSVSCIYGIGSVESYSQMIV 295
           P  DT     +S N  I   R      L   N+    ++  + + +  +   +  S+  +
Sbjct: 57  PSYDTIPYDHTSPNTNILSRRAETLTKLTTNNNNGKLLITHAANLLNKLPPKDFLSKYFL 116

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
           +L         EL   LV+  + R    I  G F V G+ I+I        A+R++   +
Sbjct: 117 KLSPKMKFTTDELAMFLVENSFTRNASSIDVGEFAVRGEIIDIILPG--PKAYRINFSWD 174

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
            IE I EF   T    ++   + I   +  V    T++                L   G 
Sbjct: 175 YIESIKEFDIDTQISTKSCMELVISPANEIVLNSETISNFKNN----------YLRNFGV 224

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                 L        E + +       E            +   +L +Y+     +F + 
Sbjct: 225 NHTDNPL-------YEAVISGRKFAGYEQLLPLFY-----DSCSSLVDYLNNPIFIFDNL 272

Query: 476 SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR-PLRFEEWN-CLRPTTIVVSATPG 533
           S   I +    Y   +              S    R  L+F  +   L PT +  +A+  
Sbjct: 273 SKQAILEFEHSYNDFY--------------SARSARNKLKFNSFYPTLSPTILYFTASEI 318

Query: 534 SWELEQCQGIIV 545
           +  LEQ   I++
Sbjct: 319 TELLEQKNNILL 330



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 77/193 (39%), Gaps = 16/193 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAA 579
             + +SATP    L+     + E  I  T  ++   E+R       + +  + D +    
Sbjct: 731 HVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRL-EVRTMVMPFDSVI--IRDALLREH 787

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +G R    V   +  ED+ + L      + Y   H ++   +  E++ +   GKFD+LV
Sbjct: 788 FRGGRSFYVVSRIKDIEDIEKQLKHIVPELSYKIAHGKMTPSKIDEVMSEFYAGKFDILV 847

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI E   + I  AD  G  +    L Q  GR  R    KV  YA     + 
Sbjct: 848 STTIIESGIDIAEANTMIIHKADMLGLSQ----LYQLRGRIGR---GKVRGYAYLTVANH 900

Query: 698 QLAIDETTRRREK 710
           +     + RR E 
Sbjct: 901 KKMTSHSLRRLEI 913


>gi|83816849|ref|YP_444216.1| transcription-repair coupling factor [Salinibacter ruber DSM 13855]
 gi|83758243|gb|ABC46356.1| transcription-repair coupling factor [Salinibacter ruber DSM 13855]
          Length = 1142

 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 95/251 (37%), Gaps = 18/251 (7%)

Query: 157 IAQLLKGIHSREKVQLLL--GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           +          ++   L   G  GS   F +  +      P  V+ P++  AA L S+ +
Sbjct: 19  LRAWTAEAQRGDRSPALHVNGAAGSLPAFLLYHLHREPGAPLCVLTPDEDAAAYLQSDLE 78

Query: 215 NFF--PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                P  A+    +          +  +   IE+              A + L E  + 
Sbjct: 79  QLVGEPDEAILRVPATQKTPYDPDQIADSTPLIERAD------------ALQRLAEGFEG 126

Query: 273 IVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
           I+V+SV  +   +   ++  +  + ++ G+ +  + L   L++Q +   +     G F  
Sbjct: 127 ILVTSVPAVGELVPPPQAVQRETLTVENGEEIALEALADRLLEQDFSPVEFVEEPGEFAR 186

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  +++FP +      R+  FG++++ + EF P T + +  + T ++  N         
Sbjct: 187 RGGILDVFP-YAGTYPIRIDFFGDEVDGLREFDPQTQRSVSRLTTARLVPNLEREEAARG 245

Query: 392 LNTAMKYIKEE 402
                +Y+ +E
Sbjct: 246 SIALFQYLPDE 256



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 11/171 (6%)

Query: 525 TIVVSATPGSWELEQC-----QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           T+ ++ATP    L+          ++E        ++  +         + + D I    
Sbjct: 727 TLTLTATPIPRTLQFSLLGARDLSLIETPPPNRQPINTEIHTFDE----DVIRDAIVYET 782

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +G ++       +   ++ E +     N+RV   H ++   E  +++ D    K DVLV
Sbjct: 783 SRGGQVFFIHNRVKTIHEVAEMVRAMVPNVRVGVGHGQMSASELEDVMLDFVNEKLDVLV 842

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             +++  GLDI     + I  A +   L     L   +GR+ R     +++
Sbjct: 843 STSIIENGLDISNANTMIINHAGEHFGLSELHQLRGRVGRSQRKAFCHLLV 893


>gi|218261990|ref|ZP_03476631.1| hypothetical protein PRABACTJOHN_02302 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223648|gb|EEC96298.1| hypothetical protein PRABACTJOHN_02302 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1126

 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 89/232 (38%), Gaps = 18/232 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q AA+  LLK      +   L G+ GSG   T+A +    +   + +  +   A   Y +
Sbjct: 22  QVAALNTLLK--SKTSRNIFLKGLNGSGAAMTIASLFFKRRGSYVCVLNDLEEAGYFYHD 79

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER--N 270
                  + + +F S Y                 K   ++   + +R     +L +    
Sbjct: 80  LVQLTGGDGIYFFPSAYRRAI-------------KYGHVDPANEILRTEVLSTLQDPTVP 126

Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
             IV    +    + S E   +  +++ +G+ ++   +   L +  +++ D     G + 
Sbjct: 127 FVIVTYPDALAEKVISREVLKENTLKISVGEKLDNMFVSDVLDEYGFEQVDYVYEPGQYA 186

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           + G  +++F S   +  +R+  FGN++E I  F   T      +++I I   
Sbjct: 187 MRGSILDVF-SFSYEFPYRIDFFGNEVETIRSFDVETQLSKEKLDSIYIVPE 237



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+   R   + + + IN    +
Sbjct: 713 TLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEV--ERFNPDIIREAINFEMSR 770

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++       +   ++   +       R    H +++  +  +II D    ++DVL+  
Sbjct: 771 NGQVFFINNRIQNIYEMEALVKREVPDARIAVGHGQMEPDKLEKIILDFVNYEYDVLIAT 830

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +++  G+D+P    + I +A + G     + L Q  GR  R+              S+  
Sbjct: 831 SIVESGIDVPNANTIIINNAQQFGL----SDLHQLRGRVGRSNRKAFCYLLSPPLSSLTQ 886

Query: 700 AIDETTRRREKQLEHN 715
                  RR  Q   N
Sbjct: 887 -----EARRRLQAIEN 897


>gi|283850616|ref|ZP_06367903.1| transcription-repair coupling factor [Desulfovibrio sp. FW1012B]
 gi|283573859|gb|EFC21832.1| transcription-repair coupling factor [Desulfovibrio sp. FW1012B]
          Length = 1150

 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 105/314 (33%), Gaps = 41/314 (13%)

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
            F  A+ +    + A+V+ P     A++ S      P +    + + Y      A    +
Sbjct: 28  AFLAAEALGR-GQSAVVVTPGHTELAKIASLLDLVAPASPGSLWAAPYMALPSYAPGRPS 86

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
             +  +         RM   A  ++      ++ ++ + +       +    I+ + +G+
Sbjct: 87  GAFWAR---------RMAFLAYAAMGSGPRILLFTADNLLPKWPPPRALEGNILTVAVGE 137

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
            + +  +    V   YKR  +    G F + GD ++IFP   E+   R+  FG+ +E I 
Sbjct: 138 ELPRDLIAEQAVLWGYKRTPMVTNPGEFSLRGDILDIFPPGYEN-PLRLEFFGDTVEAIR 196

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
            F   + + +  +        +  V                L     E        EA  
Sbjct: 197 RFDAGSQRSLAELSEAVFVPAAPAV----------------LSETFKE--------EAAS 232

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLT-GRNPG---EPPPTLFEYIPEDSLLFVDESH 477
           L + I    E+     S   +E        G  PG   E P  L  + PED+   V ++ 
Sbjct: 233 LWETIAGTGELHRAAKSH--LEAAVAAADGGIWPGLFYERPVELSAWFPEDAAWIVCDAT 290

Query: 478 VTIPQISGMYRGDF 491
               ++  +     
Sbjct: 291 KVKERLEEVEHAWR 304



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 85/240 (35%), Gaps = 25/240 (10%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +  + VTIP I  +   +  R     ++  RL +   N               + ++AT
Sbjct: 716 RILSADVTIPNIGLLILDEEQRFG--VKHKERLKAFKKNID------------ALTLTAT 761

Query: 532 PGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
           P    L+    G+    +I         VE          + + +    ++  ++     
Sbjct: 762 PIPRTLQLSLSGVRGLSVIETPPAERKTVETALVERDEAFLKEVLRRELERQGQVFWVHN 821

Query: 591 TKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
             +  ED+  ++       +    H ++      E +     G+ D+LV  +++  GLD 
Sbjct: 822 RVQGLEDVAAFVKTLAPEAKVAMAHGQMSETALEEAMHGFWHGETDILVCTSIIESGLDF 881

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           P    + + +A   G  +    L Q  GR  R+       YA  +  SI+  + E  R+R
Sbjct: 882 PRANTLVVDNAHMFGLGQ----LYQLRGRVGRSPRQ---AYAYFVVPSIEK-VPELARKR 933


>gi|298373454|ref|ZP_06983443.1| transcription-repair coupling factor [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274506|gb|EFI16058.1| transcription-repair coupling factor [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 1109

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 94/217 (43%), Gaps = 15/217 (6%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           +   L G+  S ++  +A+++    +  +++A +   A   Y +      +  V +F ++
Sbjct: 29  RHIALQGLRASAQSVAIAEMLRHTDKNILLVADDGDGAGYAYFDIVQLLGNERVAFFPAF 88

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSV 287
           Y +               K  +   + + +R  +   +  +N CI+VS    +   + + 
Sbjct: 89  YKHNH-------------KSGATIAENEILRTDSLNKISGKNPCIIVSYPEALVEKVVAS 135

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
             +    ++L+ G S +   L+  L K  ++  D     G +   G  ++IF S+  ++ 
Sbjct: 136 SYFVGSKIELRKGQSYDMNSLVGQLQKAGFEEVDFVYEVGQYSQRGSIVDIF-SYSNELP 194

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
           +RV  FG++IE I  F       + +V++I I AN+ 
Sbjct: 195 YRVDFFGDNIESIRMFDIERQLSVSSVDSIDIVANTD 231



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+    G     II        PV     R   E + + I     +  
Sbjct: 700 TLTLTATPIPRTLQFSLMGARDLSIINTPPPNRYPVVTELIRFDEETIREAIEFEMNRNG 759

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I       +    L   + +     R    H ++ T +  + I D     +D+L+   +
Sbjct: 760 QIFFVNNKIQNLYLLQTKIKKIVPEARIAVAHGQMPTTQLEDTIIDFINYDYDILLATTV 819

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + + +A+  G     + L Q  GR  R+       Y   IT  ++   
Sbjct: 820 IESGIDMPNVNTIFVNNANHFGL----SDLHQLRGRVGRSNRK---AYCYLITSDMKDVS 872

Query: 702 DETTRRRE 709
           D+  RR +
Sbjct: 873 DDARRRLQ 880



 Score = 38.5 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLR 643
           IL     K  AE L  Y     + V Y+       +  EII  LR GK D+L+G + +  
Sbjct: 609 ILAFQHYKTFAERLKNY----PVTVEYLSRAKSPKQTKEIISRLREGKIDILIGTHKIAN 664

Query: 644 EGLDIPECGLVAILDADKEG 663
           + +   + GL+ I +  K G
Sbjct: 665 KDVVFKDLGLLVIDEEQKFG 684


>gi|322515432|ref|ZP_08068423.1| transcription-repair coupling factor [Actinobacillus ureae ATCC
           25976]
 gi|322118555|gb|EFX90788.1| transcription-repair coupling factor [Actinobacillus ureae ATCC
           25976]
          Length = 1162

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 95/253 (37%), Gaps = 24/253 (9%)

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-NDCIVVSSVSCIYGIGSVESYSQ 292
           P +  P  +T      S ++ I   R SA   L +      ++   + +  +      + 
Sbjct: 82  PVSVFPDWETLPYDNFSPHQDIISARLSALFHLQQGNKQIFLLPINTLLQKVCPPSYLAN 141

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
            +  +K GD    + L   L    Y+  +  +  G + V G  ++++P   E   +R+  
Sbjct: 142 NVFLIKKGDRFSIQSLRLQLENAGYRAVEQVLEYGEYAVRGALLDLYPMGAES-PFRLDF 200

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           F ++I+ I  F   + + I  +  I +     +    PT +  +++ + + + +  E+ +
Sbjct: 201 FDDEIDSIRTFDVDSQRTIAEINEINLLPAHEF----PTDSNGIEHFRSKFREQFGEIRR 256

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDS-LL 471
                E + + Q+++              IE +          E   +LF+Y+ E++  +
Sbjct: 257 -----EPEHIYQQVSK-------GILNAGIEYWQPLFF-----EEMASLFDYLAENTLFI 299

Query: 472 FVDESHVTIPQIS 484
             D       Q  
Sbjct: 300 TFDGIAEKAEQFH 312



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 69/179 (38%), Gaps = 9/179 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQG 582
            + ++ATP    L      + +  I  +      + I++   Q +D+   + I     +G
Sbjct: 770 ILTLTATPIPRTLNMALNGMRDLSIIAS-PPARRLTIKTFVRQHDDLVVREAILREILRG 828

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E+    L E     R +  H +++  E   ++ D    +F++LV   
Sbjct: 829 GQVYYLHNDVATIENCATKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCST 888

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K++  
Sbjct: 889 IIETGIDVPTANTIIIDRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKTLTK 943


>gi|300774874|ref|ZP_07084737.1| transcription-repair coupling factor [Chryseobacterium gleum ATCC
           35910]
 gi|300506689|gb|EFK37824.1| transcription-repair coupling factor [Chryseobacterium gleum ATCC
           35910]
          Length = 1122

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/397 (13%), Positives = 132/397 (33%), Gaps = 50/397 (12%)

Query: 142 QMQT---DYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           Q+++    + P   Q     ++   + + +    + G  GS  +  +A++    ++  + 
Sbjct: 2   QLKSINEKFLPDLLQKEFGKEIFTKLENNQ-HIAVKGSAGSSVSIFVAELFLVQKKNILY 60

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM 258
           +  +K  A    +E ++    + V YF             P T     +          +
Sbjct: 61  LVDDKEDALYANTEMEDLLGKDKVLYF-------------PATHLEPYQVEKTQNANLVL 107

Query: 259 RHSATRSLLERNDCIVVSSVSCIY--GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           R      +       V+ + +      +   E +  +   +K+GD ++   +   L    
Sbjct: 108 RTEVLNKINSGRSPKVIVAYAGALSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLNHYH 167

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           +++ D     G F V G  +++F S+  +  +R++ FGN++E I  F   T   +  V+ 
Sbjct: 168 FQQADFVSEPGEFSVRGGIVDVF-SYSHEKPYRITFFGNEVESIKTFDIETQLSVDKVKD 226

Query: 377 IKIYANSHYVTPR-----------------PTLNTAMKYIKEELKMRLIELEKEGRLLEA 419
            ++ +N ++                           M+ I+   +  L + +   + +  
Sbjct: 227 FQLVSNMNFSVTGTRVSLLQLLPHESFVVSKNGMVGMQKIRTFYEKSLEKYDTLSKDIAH 286

Query: 420 QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIP-----EDSLLFVD 474
           +  ++    D E L      ++++     + G           + +P     ++  L ++
Sbjct: 287 RTPQELFISDQEFLFDYKKFKTVDFGGVVIEGLKEVTEVK--MDQLPQPSFHKNFELLIE 344

Query: 475 ESHVTIPQISGMYRGDFHRKAT------LAEYGFRLP 505
           +           +      K          E    LP
Sbjct: 345 DIEEKQNNGFDTWISFSTEKQKERLESIFEELEHELP 381



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 93/269 (34%), Gaps = 38/269 (14%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +  +I+       PVE +      E + D ++   Q+  
Sbjct: 709 TLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVETQLIGFNEETLRDAVSYELQRDG 768

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +D+   +       R +  H +++  +  + + D   GK+DVLV   +
Sbjct: 769 QVYFINNRIENLKDIAGLIQRLVPDARVITGHGQMEGKQLEKNVLDFMEGKYDVLVSTTI 828

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I DA + G       L Q  GR  R+               +    
Sbjct: 829 VESGVDVPNANTIFINDAQRFG----MADLHQMRGRVGRSNRKAFCYLITPPYDMM---- 880

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761
             T+  R++                  I +  D       A  ++ I      L  ++  
Sbjct: 881 --TSDARKRLEA---------------IEQFSDLGSGFQIAMKDLEIRGAGDLLGAEQ-S 922

Query: 762 AHLKSL-----RKQMHLAADNL----NFE 781
             +  +     +K M  A + L    +FE
Sbjct: 923 GFINEMGFETYQKLMQEALEELKDDADFE 951


>gi|212550582|ref|YP_002308899.1| transcription-repair coupling factor [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548820|dbj|BAG83488.1| transcription-repair coupling factor [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 1109

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 75/217 (34%), Gaps = 17/217 (7%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAM-QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY 224
             E    L G+ GS K+     + + +  R  + +  +   A   Y +         V +
Sbjct: 26  ENESNIYLKGLLGSAKSLICCCIFKKIRNRNLLCVLNDLEEAGYFYHDCCQVLGEKDVLF 85

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER--NDCIVVSSVSCIY 282
           F S +          R   Y +K    N   + +R      L        IV    +   
Sbjct: 86  FPSQFR---------RNIRYGQK----NAANEILRIEVLSRLNNGGQPCIIVSYPDALAE 132

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
            +          + + I + ++   ++  L    +++ D     G + V G  +++F S 
Sbjct: 133 KVVDPNKLKSNTLTINIHEKIDVLFVMDVLNSYHFEQVDYVYEPGQYAVRGSIVDVF-SF 191

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             +  +R+  FG++IE I  F   T      + +I I
Sbjct: 192 SNEYPYRIDFFGDEIESIRSFNIETQLSKDKLNSISI 228



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 12/167 (7%)

Query: 528 VSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
           ++ATP    L+        I      P        E+      +  + + IN    +  +
Sbjct: 707 LTATPIPRTLQFSLMGARDISNISTPPPNRYPIHTELHRFEKNI--IREAINFEMSRNGQ 764

Query: 585 ILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           I +         DL + + +   + R+   H ++++ +  +II D    ++D+L+  +++
Sbjct: 765 IFIINNRISNLGDLKDLVKKEIPDGRIAIGHGQMESTKLEQIITDFVNYEYDILISTSII 824

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
             G+DIP    + I +A   G     + L Q  GR  R  N K   Y
Sbjct: 825 ENGIDIPNANTIIINNAQNFGL----SDLHQLRGRVGR-GNRKAFCY 866


>gi|89054813|ref|YP_510264.1| transcription-repair coupling factor [Jannaschia sp. CCS1]
 gi|88864362|gb|ABD55239.1| transcription-repair coupling factor [Jannaschia sp. CCS1]
          Length = 1153

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 119/332 (35%), Gaps = 35/332 (10%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
            +L G    G   T+  + EA   P + +A +      + +    F P   V  F  + D
Sbjct: 6   HILAGGAPEGFDATLV-LKEAATGPVLHVARDDKRLRAMATALAFFDPSVPVLEFPGW-D 63

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
               +   P+ +    + +++         +A  + L+ +  ++ +  +    +   +  
Sbjct: 64  CLPYDRVSPQAEISAARMATL---------AALAAGLQGSFIVLTTLNAATQYVPPRDLL 114

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           +       +G  V++  L + LV+  Y +       G + V G  I+++P   E+   R+
Sbjct: 115 ASSAFVASVGGRVDEDALRAFLVRMGYVQSPTVSEPGDYAVRGGIIDVWPP-GEEQPVRL 173

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +FG+ ++    F  +T +    ++ +++   S  +     +    +  + E        
Sbjct: 174 DLFGDTLDGARRFDVVTQRTTEKLQRVELAPVSEVILDEAAIARFRQNYRVE-------F 226

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
              G                E +      Q +E++  +   R       TLF+Y+P  ++
Sbjct: 227 GAGGSE----------DPLYEAVTAGRKAQGMEHWLPFYHARLE-----TLFDYLPGATI 271

Query: 471 LFVDES-HVTIPQISGMYRGDFHRKATLAEYG 501
              D+S    + +   +      RK  L + G
Sbjct: 272 TLDDQSTPQRLARWDSITDQYDTRKTALTQKG 303



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 9/175 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + +SATP    L+     + +  +  T  VD    IR+  ++ +   + + +     +
Sbjct: 754 HVLTLSATPIPRTLQMSLSGVRDLSMIGTPPVDRLA-IRTYVSEFDTVTIREALLREHYR 812

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V   +   ++ E+L +    V Y+  H ++   E  + +     GK+DVL+  
Sbjct: 813 GGQTFYVVPRIQDLPEIEEFLKDHVPEVTYITAHGQMAAGELDDRMVAFYDGKYDVLLAT 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
            ++  G+DIP    + I  AD  G  +    L Q  GR  R              
Sbjct: 873 TIVESGIDIPTANTMVIHRADMFGLAQ----LYQIRGRVGRAKTRAYAYLTTKPR 923


>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040624|gb|ACT57420.1| transcription-repair coupling factor [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1187

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 83/578 (14%), Positives = 190/578 (32%), Gaps = 86/578 (14%)

Query: 161 LKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           ++ I  +  K   L  V    + F +A+ I  +    + +  ++ +   L        P 
Sbjct: 7   IERISEKYCKKITLSPVIDGTEGFILAE-IARLGLSLVYICSDERILINLKKILTLVVPD 65

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE----RNDCIVV 275
             V  F             P  D       S +  +   R S   +L+     +   IV+
Sbjct: 66  IRVIIF-------------PAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVL 112

Query: 276 SSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           ++VS +     ++ S     + ++  D ++  +++  L    ++R +     G + V G 
Sbjct: 113 TTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGG 172

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++++    +    R+  FGN I+ +  F   T + IR +   +I   S  +     ++ 
Sbjct: 173 ILDVYEP-TKKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISR 231

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
                      R   L   G   +   L   I+              +E++  +      
Sbjct: 232 F----------RENYLANFGTTTQEDPLYVAIS-------QGRRYPGMEHWLPFFYQSME 274

Query: 455 GEPPPTLFEYIPEDSLLFVDE-----SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
                T+F Y+ E   +  D      +      I   Y       +   +Y    P   +
Sbjct: 275 -----TIFPYLSE-FCIITDPLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPE 328

Query: 510 NRPLRFEEWNCLRPTTI-VVSATP-GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR-- 565
              L +++++ L  TT  +V  T     E    + + +      + +     +I S    
Sbjct: 329 KLYLNYQQFDALIQTTHKLVQMTAFNQQETAHNRVVHLNAFPGKSWVPSAVQKIESQDNW 388

Query: 566 ---TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
               + +     +   AQ+G++ +++  ++   + L   +     +      ++K +  +
Sbjct: 389 ESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFK------KIKKINTL 442

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             I  L   +   ++    + +G +     LV   + D  G   ++        R  R  
Sbjct: 443 TEINSLLKEEIAAVILP--INQGFETKHMILV--TETDLLGKKIAR--------RVVRKK 490

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
           N     + D+        I+E        +  + +H I
Sbjct: 491 NVHAQSFFDSSN------IEEGA------IIVHAEHGI 516



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 87/248 (35%), Gaps = 16/248 (6%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+      V ++   +      +  R++ +  + +   + +     +
Sbjct: 775  HVLTLSATPIPRTLQLA-ITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYR 833

Query: 582  GLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            G +           E     L   + E  I +   H ++      + +     G++DVL+
Sbjct: 834  GGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMA--HGQMSPKNLEDKMNAFYEGQYDVLL 891

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              +++  GLD+P+   + +  AD  G  +    L Q  GR  R+  +   L+     + +
Sbjct: 892  STSIVESGLDLPKANTMIVQRADMFGLAQ----LYQLRGRVGRSKIASFALFLLPENRPL 947

Query: 698  QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
              A     R R  Q  +         S    I      +L E+ +     I  +      
Sbjct: 948  TAAAQ--KRLRILQSLNTLGAGFQLASYDLDIRGT-GNLLGEEQSGHIREIGFELYQKML 1004

Query: 758  KKGKAHLK 765
            ++  A +K
Sbjct: 1005 EETVASIK 1012


>gi|296448068|ref|ZP_06889971.1| transcription-repair coupling factor [Methylosinus trichosporium
           OB3b]
 gi|296254425|gb|EFH01549.1| transcription-repair coupling factor [Methylosinus trichosporium
           OB3b]
          Length = 1173

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 95/535 (17%), Positives = 164/535 (30%), Gaps = 88/535 (16%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR-----PAIVM--APNKILAA 207
            AIA++  G            V      F  A +  A+ R     PA+ +  A +   +A
Sbjct: 6   KAIARIEAG-----DALAFTHVPDGFDAFVCADLARALARGAEGKPAVFVHVARDAQRSA 60

Query: 208 QLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL 267
                 +   P   VE              VP  D       S N  I   R +A   L 
Sbjct: 61  AFREALRFAAPE--VEALD-----------VPGWDCQPYDRVSPNAAISARRMTALARLA 107

Query: 268 -----ERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
                     IV ++V C+   +  +E+ +        G+ V   EL   L    + R  
Sbjct: 108 RSKSSAERPRIVTTTVDCLLQRVPPLEAVAADTFSAAPGNVVHMDELARWLEANGFLRSS 167

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
                G +   G  ++++ +       R+  FG+ +E I  F P + + I  +  + +  
Sbjct: 168 AVRETGEYAQRGGILDLY-APGMPTPVRLDFFGDTLESIRSFDPESQRTIGQLRALDLVP 226

Query: 382 NSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQS 441
            S       ++             R     + G          R  +  E +      Q 
Sbjct: 227 MSELRLTSDSMRRF----------RQAYTTRFGGQT-------RGDHLYEAISEGRRFQG 269

Query: 442 IENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
            E++      R       +LF+YI   + L +D           +      R A +A+Y 
Sbjct: 270 AEHWLPLFYPRM-----GSLFDYIGS-APLMLD---------QLVDEAAGERAAQIADYY 314

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE- 560
                  D  P     +  L P  + +S      ++E            P G     ++ 
Sbjct: 315 DARKFAYDAAPAE-ASYKPLEPKELYLSVEEWRGQIEARGRARFSPFAAPEGAEKTAIDC 373

Query: 561 -IRSAR-----------TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
             R  R              E   D +      G  +++   +    E L   L E  +R
Sbjct: 374 AARPGRDFAPERNDENANVFEAAVDHVKALRGAGKSVVVAGWSDGSCERLGSVLAEHGLR 433

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                 +V+T+  +     L LGK    + +  +  G +    GLV I + D  G
Sbjct: 434 ------DVQTVSSL--PAALALGKGATALAVLGVEHGFETD--GLVVIGEQDILG 478



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 93/258 (36%), Gaps = 37/258 (14%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +RS  +  + +   + +     +
Sbjct: 773  HVLTLSATPIPRTLQLAMTGVRELSLIATAPVDRLA-VRSFVSPFDPLIVREALLRERYR 831

Query: 582  GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +           ED   +L E     +++  H ++   +  E +     GK+D+L+  
Sbjct: 832  GGQAFFVCPRIEDLEDAAAFLREVVPEAKFVMAHGQMAAGDLEERMTAFYDGKYDILLST 891

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K+   
Sbjct: 892  TIVESGLDIPTANTLIVWRADMFGLAQ----LYQLRGRVGRSKTRAYALFTTPANKT--- 944

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                                I PQ+ K  ++++ +D +       ++        +L   
Sbjct: 945  --------------------ITPQAQKRLEVLQSLDTLGAGFQLASHDLDIRGAGNLLGD 984

Query: 759  KGKAHLK----SLRKQMH 772
            +   H+K     L +QM 
Sbjct: 985  EQSGHIKEVGYELYQQML 1002


>gi|227504114|ref|ZP_03934163.1| transcription-repair coupling factor [Corynebacterium striatum ATCC
           6940]
 gi|227199290|gb|EEI79338.1| transcription-repair coupling factor [Corynebacterium striatum ATCC
           6940]
          Length = 1220

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 102/645 (15%), Positives = 199/645 (30%), Gaps = 109/645 (16%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
            E    + G+    + + +  +      P +V+      A  L +E          ++  
Sbjct: 27  GEPHLHITGI-DQARPWAIGTLANQA--PVLVVTATGREAEDLTAELTAMMGDKVAQF-- 81

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
                       P  +T   +  S    I   R      + E    +VV++         
Sbjct: 82  ------------PAWETLPHERLSPGADIVGRRAQVLHRIAEGKLRVVVTAARGYSQPIL 129

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
                +  + L     +E + ++S L  + YK  D+   RG + V G  +++FP+ L D 
Sbjct: 130 KNVEGRSPISLAEDMEIELEAIVSQLEFRAYKHVDMVAKRGEYAVRGGILDVFPTTL-DY 188

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVE--TIKIYANSHYVTPRPTLNTAMKYIKEELK 404
             RV  +G++I +I +F     + I  +E   + I+              A     +EL 
Sbjct: 189 PVRVEFWGDEITDIRQFSVADQRAIPEIEVGAVDIFPARELPITDDVAKRA-----QELA 243

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
             L        +    ++ + I  D            +E     L+      P  TL E+
Sbjct: 244 --LKHPGNAALVELLTKVGEHIPAD-----------GMEALLAVLSDA----PLITLPEF 286

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN----- 519
           +PE + + +        +I+ +   D          G+   +   + PL  E  +     
Sbjct: 287 MPEGTHVLLVAPEKIRTRIADLESTDAE----FLAAGWEAAAMGADGPLAAEGLDTEAAS 342

Query: 520 -----------CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
                            +   A PG +  ++ Q + +E    PT   D          ++
Sbjct: 343 YRSYESLEATCANANLPLWTFAPPGMFMADEAQTLPLEYEPGPTPRGDVK--------EI 394

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + +  ++    + G R       +   + + E   E+ IR +      +           
Sbjct: 395 DAMMAQLLAHTRDGGRAAFIAPAQGAIKRMVERFVEKGIRTKVATPGWEPTP-------- 446

Query: 629 RLGKFDVLVGINLLREGLDIPECG-----------LVAILD--------ADKEGFLRSKT 669
                +V +   L   GL  P+             LV + +         D  G  R   
Sbjct: 447 ----GEVTLYQALSHAGLVFPKARSQGGATKEALPLVVVTETDLTGNRVGDIAGAKRRPA 502

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLA------IDETTRRREKQLEHNKKHNINPQ 723
                +   A      V+     I + +++A       DET+RR    LE+       P 
Sbjct: 503 KRRNRVDPLALKQGDHVVHETHGIGRFLKMAERTIQSGDETSRREYIVLEYAASKRGQPA 562

Query: 724 SVKEKIMEVID--PILLEDAATTNISIDAQQLSLSKKKGKAHLKS 766
                 M+ +D           T   +       +KKK +A ++ 
Sbjct: 563 DQLWVPMDSLDLLSKYTGGEKPTLSKMGGSDWKNTKKKARAAVRE 607



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 69/204 (33%), Gaps = 23/204 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + ++ PP +     T V     + +   I    
Sbjct: 795 VLTMSATPIPRTLEMSMAGIREM----STILTPPEDRHPVLTYVGAYEDKQIAAAIRREL 850

Query: 580 QQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +  +           E    +L E + E  I V   H ++      + ++     ++DV
Sbjct: 851 LRDGQTFFIHNKVSDIEKKARELRELVPEARIVVA--HGQMNEEALEQTVQGFWDREYDV 908

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  GLDI     + + +A   G  +    L Q  GR  R+       +      
Sbjct: 909 LVCTTIVETGLDIANANTLIVENAHHMGLSQ----LHQLRGRVGRSRERGYAYFLYPKG- 963

Query: 696 SIQLAIDETTRRREKQLEHNKKHN 719
                + ET+  R   +  N    
Sbjct: 964 ---ATLTETSYDRLATIAQNNDLG 984


>gi|229586940|ref|YP_002845441.1| Transcription-repair coupling factor [Rickettsia africae ESF-5]
 gi|228021990|gb|ACP53698.1| Transcription-repair coupling factor [Rickettsia africae ESF-5]
          Length = 1122

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 124/373 (33%), Gaps = 56/373 (15%)

Query: 179 SGKTF-TMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           + K+F T+    + +++  I+ A N+  A QLY +   F  +  + YF            
Sbjct: 9   AAKSFFTIDNFTKNLKQDFILSASNEEEALQLYKQALFFSSNENIYYF------------ 56

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERN----DCIVVSSVSCIYGIGSVESYSQM 293
            P  +T     +S N  I   R      L   N      ++  + + +  +   + +S+ 
Sbjct: 57  -PSYNTIPYDHTSPNANILSRRAETLIKLTTNNSNSNKLLITHTANLLNKLPPKDFFSKY 115

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            ++L         EL   LV+  + R    I  G F V G+ I+I        A+R+   
Sbjct: 116 FLKLSPKMKFTTDELAMFLVENSFTRNASSIDVGEFAVRGEIIDII--LSGPKAYRIHFS 173

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
              IE I EF   T    ++   + I   +  V    T+                 L   
Sbjct: 174 WGYIESIKEFDIDTQISTKSCRELIISPANEIVLNSETIGNFKNN----------YLRNF 223

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
           G       L        E + +       E            +    L +Y+ +   +F 
Sbjct: 224 GVNHTDNAL-------YEAVISGRKFTGYEQLLPLFY-----DSCSNLIDYLNDPIFIFD 271

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN-CLRPTTIVVSATP 532
           + S   I +    Y   +              +  +   L+F  +   L PT++  +A+ 
Sbjct: 272 NLSKQAILEFEHSYNDFYS-------------ARSEANKLKFNSFYPTLSPTSLYFTASE 318

Query: 533 GSWELEQCQGIIV 545
            +  LEQ   I++
Sbjct: 319 ITELLEQKNNILL 331



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  T  ++   E+ ++    + V   D +     +
Sbjct: 732 HVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRL-EVHTSVMPCDPVIIRDALLREHFR 790

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G R    V   +  ED+ + L +    + Y   + ++   +  E++ +   GKFD+LV  
Sbjct: 791 GGRSFYVVPRIKDIEDIAKQLKQIVPELSYKIAYGKMTPSKIDEVMSEFYAGKFDILVST 850

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI E   + I +AD  G  +    L Q  GR  R        YA     S + 
Sbjct: 851 TIIESGIDIAEANTMIIHNADMLGLSQ----LYQLRGRIGRGKMRG---YAYLTVASHKK 903

Query: 700 AIDETTRRREK 710
               + RR E 
Sbjct: 904 MTSHSLRRLEI 914


>gi|317479277|ref|ZP_07938412.1| transcription-repair coupling factor [Bacteroides sp. 4_1_36]
 gi|316904565|gb|EFV26384.1| transcription-repair coupling factor [Bacteroides sp. 4_1_36]
          Length = 983

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 95/268 (35%), Gaps = 33/268 (12%)

Query: 124 TPHRSWSINNHSKDITFFQMQTDY--HPSGDQPAAIAQLLKGIHSREKVQLLL-----GV 176
            P+         K +   ++Q  Y  HP+          ++G+    K   +      G+
Sbjct: 38  IPYERQYRGKKRKAMNITELQQSYASHPN----------VEGVCRLLKDNSVRHLYCGGL 87

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
             S  +   + +++    P + +  +   A   Y +         V +F S +       
Sbjct: 88  YASAASLFSSVLVQRATCPLVFILGDMEEAGYFYHDLTQILGTEQVLFFPSSFRRAIK-- 145

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVESYSQMI 294
                  Y +K+++     + +R      L +  +  C+V    +    + S +      
Sbjct: 146 -------YGQKDAAN----EILRTEVLSRLQKGEEGLCVVTYPDALAEKVVSRKELGDNT 194

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           ++L  G+ V+   +   L    ++  D     G + V G  I++F S   +  +R+  FG
Sbjct: 195 LKLHAGERVDMNFVTDVLRSYGFEYVDYVYEPGQYAVRGSIIDVF-SFSSEYPFRIDFFG 253

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYAN 382
           +++E +  F   T       E+I I  +
Sbjct: 254 DEVESVRTFEVETQLSKEKKESIVIVPD 281



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 65/170 (38%), Gaps = 11/170 (6%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+       P+  E+ +   ++  + D +N    +
Sbjct: 765 TLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNEEI--IADAVNFEMSR 822

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++           +L   +       R    H +++  E  +II D     +DVL+  
Sbjct: 823 NGQVFFVNNRISNLFELKAMIERHIPDCRVCIGHGQMEPAELEKIIFDFVNYDYDVLLAT 882

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            ++  G+DIP    + I  A   G     + L Q  GR  R++    +  
Sbjct: 883 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSIKKLSVTC 928


>gi|159044110|ref|YP_001532904.1| transcription repair coupling factor [Dinoroseobacter shibae DFL
           12]
 gi|157911870|gb|ABV93303.1| transcription repair coupling factor [Dinoroseobacter shibae DFL
           12]
          Length = 1160

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 79/463 (17%), Positives = 150/463 (32%), Gaps = 57/463 (12%)

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV---SSVSCIYGIGSVESY 290
           P    P  D      SS N +I   R +   +L        V   +  +    + +  + 
Sbjct: 60  PVLRFPGWDCLPYDRSSPNPEISATRMATLAALAHGVPGPFVLLTTLSAVTQRVPARATL 119

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
           ++     ++G  +++  L   L +  + +       G + + G  I+IFP   +    R+
Sbjct: 120 AEASFSAQVGGRIDEAALRQFLTRMGFVQAPTVTEPGDYAIRGGIIDIFPP-GQSGPVRL 178

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIEL 410
            +FG+ ++    F   T +    ++ I++   S  +     +    +  + E        
Sbjct: 179 DLFGDVLDGARRFDAATQRTTEKLDAIELAPVSEIILDPAAITRFRQSYRIE-------F 231

Query: 411 EKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL 470
              G                E +        +E++  +   R       TL +Y+PE SL
Sbjct: 232 GAAGTD----------DPLYEAVSAGRKHAGMEHWLPFFHDRLE-----TLLDYVPEASL 276

Query: 471 LFVDESHVT-IPQISGMYRGDFHRKATLAEYGFR------LPSCMDNRPLRFEEWNCLRP 523
           +  D+     + +  G+      R+  LA+ G         P      P   E       
Sbjct: 277 ILDDQFEAMHLSRWEGIKDQYETRRHALAQKGQMGTVYKPAPPETLYIPPADETALLATK 336

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T+ +S  P         G  V       G    P     A    E +   I    +   
Sbjct: 337 RTLQLSVLPS------ASGPGVTDAGGRIGRNFAPERQSQATGLFEALATHITEKRKTSQ 390

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
            +++   ++   E L   L ++         ++  L  I  + D+  G   V + +  L 
Sbjct: 391 -VVIASWSEGARERLRGLLEDQ---------DLSGLTEIARLSDIPEGTGGVHLLVWALD 440

Query: 644 EGLDIPE---CGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           EG + P+     L  I + D  G       LI+T  R  R  N
Sbjct: 441 EGFEGPDHRSTRLTVISEQDVLG-----DRLIRTTKRKRRAEN 478



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 9/161 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 756 HVLTLTATPIPRTLQLSLSGVRDLSIIGTPPVDRL-SIRTYVSEFDPVTLREALLREHYR 814

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V   +   ++  +L ++   V ++  H ++   E  + +     GK+DVL+  
Sbjct: 815 GGQSFFVVPRIKDIPEIEAFLRDQVPEVSFVVAHGQMAAGELDDRMNAFYDGKYDVLLAT 874

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            ++  GLDIP    + I  AD  G  +    L Q  GR  R
Sbjct: 875 TIVESGLDIPTANTMIIHRADMFGLSQ----LYQIRGRVGR 911


>gi|325107412|ref|YP_004268480.1| transcription-repair coupling factor [Planctomyces brasiliensis DSM
           5305]
 gi|324967680|gb|ADY58458.1| transcription-repair coupling factor [Planctomyces brasiliensis DSM
           5305]
          Length = 1114

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 99/254 (38%), Gaps = 14/254 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKIL 205
           D  P  D    +A+++  +   E    + G  GS +    +  +       +V+AP    
Sbjct: 19  DLVPLVDATPEMAEIVAALQRGESG-TIDGAWGSARALAASVFVPHCSGMLVVVAPRATD 77

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
             +L  +   F       +   +          P+   Y  +     + + R+  +   +
Sbjct: 78  MDELIVDLTAFLGEEPAVFPAIHGVPADWNLADPQ---YGARL----QLLKRLHQAGDET 130

Query: 266 LLERN---DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
           L ER     C+V S  + +  + S +   +    LK+GD ++ +E    LV++ ++R   
Sbjct: 131 LPERPAFPRCLVTSIEALLQPVPSHQQLREFTRTLKVGDELDLEEWSHWLVERGFERTTA 190

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI--KIY 380
             + G F + G  +++FP+       R+ +FG+++E I  F   + +KI  ++ +   ++
Sbjct: 191 IELPGEFAIHGGILDLFPTDSL-APLRIELFGDEVESIRTFDVESQRKIDTLKQVQLTLF 249

Query: 381 ANSHYVTPRPTLNT 394
                V        
Sbjct: 250 PAQEAVFGDQKKRK 263



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQCQ---GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L         I      P G     +E R  R   E +   I     +
Sbjct: 724 ILTLSATPIPRTLHMSLLGIRDISNLQTPPRGRQA--IETRICRWDPELIRHAIVRELNR 781

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++          E+LTE L +     ++  +H ++   E  + +     GK DVL+  
Sbjct: 782 NGQVYFVHNRVYDIEELTEKLQQIVPEAKFGIVHGQMSESELEKQMVAFVRGKTDVLMAT 841

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + I +AD+ G       + Q  GR  R  +           K    
Sbjct: 842 TIIESGLDIPNANTMFIHEADRYGL----ADMHQLRGRVGRFKHRAYCYLVVEEGK---- 893

Query: 700 AIDETTRRREKQLEHNKKHN 719
            +  T+ RR K +E   +  
Sbjct: 894 VLSTTSTRRLKAIEEYSELG 913


>gi|331694753|ref|YP_004330992.1| transcription-repair coupling factor [Pseudonocardia dioxanivorans
           CB1190]
 gi|326949442|gb|AEA23139.1| transcription-repair coupling factor [Pseudonocardia dioxanivorans
           CB1190]
          Length = 1194

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 97/541 (17%), Positives = 172/541 (31%), Gaps = 87/541 (16%)

Query: 143 MQTDYHPS-GDQPAAIAQLLKGIHSREKVQLLLGVTG-SGKTFTMAKVIEAMQRPAIVMA 200
           + +   P+ GD   A+A L      R      L V G S     +A  I A     + + 
Sbjct: 9   LLSATTPALGDVLDAVAAL----DPRTATTPALKVEGPSALRPFLASAIVAAGPTVLAVT 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
                A  L +   +     AV    S+ +    E   PR DT               R 
Sbjct: 65  ATDREAEDLAAAASDLIGGEAVAVLPSW-ETLPHERLSPRPDTVGR------------RL 111

Query: 261 SATRSLLERNDCI--VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYK 318
           +  R+L   +  I  V ++   +    +    +   V+L++G   E + LL  LV+  Y 
Sbjct: 112 TIFRALAGGDTPIRLVTAAARSLIQPIAPGLGTLDPVRLRVGTEYEFELLLERLVELAYT 171

Query: 319 RQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
           R ++   RG F V G  +++F    E    R+  +G+++ E+  F     + +  VE + 
Sbjct: 172 RVEMVTERGEFAVRGGIVDLFVPTAE-HPVRIEFWGDEVSELRSFAVADQRSVDVVEEVV 230

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE---T 435
             A    +   P    A                      E  R+ +      E+LE    
Sbjct: 231 APACRELLLTAPVRERA---------------------AELARVHENTPQLRELLEKLAQ 269

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRG-----D 490
               + +E+    L G         L + +P  S++ V +  +   +   + R      +
Sbjct: 270 GIPAEGMESLIPALVGDEMQL----LTDLLPAGSVVLVADPELLRTRARDLVRTGQEFLE 325

Query: 491 FHRKATLAEYGFRLPSCMDNRPL----RFEEWNCLRPTTI----VVSATPGSWELEQCQG 542
               A                 L      +    L   T     VV+ +P    L     
Sbjct: 326 ASWLAASLGTDDVAAGAAAPIDLGASAYRDLGEVLAHATTTGRPVVTLSPL---LSGADD 382

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           ++V Q+           EI S R   +    ++      G   +  V  +  A+   E L
Sbjct: 383 VLVPQVH----------EIESYRGDTDRALVDLRAHTATGGAAVFVVAGQGTAQRSLEQL 432

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +    +  +           K  V V    + +G      GLV + +AD  
Sbjct: 433 RDAEVPAVLVEDLAEAPD-----------KGLVTVTCGRVADGFTAAGIGLVVLSEADVT 481

Query: 663 G 663
           G
Sbjct: 482 G 482



 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 48/150 (32%), Gaps = 13/150 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV-----EDVYDEINLA 578
            + +SATP    LE          IR    +  P E R    T V     + V   I   
Sbjct: 785 VLTLSATPIPRTLEMSLAG-----IREMSTITTPPEARHPTLTYVGAYDPKQVGAAIRRE 839

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVL 636
             +  ++          +     + E     R    H ++        +      +FDVL
Sbjct: 840 LLRDGQVFYVHNRVSTIDRAARTVQELVPEARIAVAHGQMNEDVLERTVNGFWHREFDVL 899

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLR 666
           V   ++  GLDI     + +  +D  G  +
Sbjct: 900 VCTTIVENGLDISNANTLIVERSDTLGLSQ 929


>gi|316934177|ref|YP_004109159.1| transcription-repair coupling factor [Rhodopseudomonas palustris
           DX-1]
 gi|315601891|gb|ADU44426.1| transcription-repair coupling factor [Rhodopseudomonas palustris
           DX-1]
          Length = 1172

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/382 (16%), Positives = 115/382 (30%), Gaps = 66/382 (17%)

Query: 180 GKTFTMAKVIEAMQ-------------RP------AIVMAPNKILAAQLYSEFKNFFPHN 220
           GK  T A V E  +             RP        V+  +     QL    + F P  
Sbjct: 15  GKALTFANVAEGAEGLIVADLARAVAARPKAPAVSLAVICRDGPRMQQLARSLEFFAPDL 74

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-----ERNDCIVV 275
            V  F             P  D       S +  I   R +    L      ++   ++ 
Sbjct: 75  EVLQF-------------PAWDCQPYDRVSPHAGILAQRVTTLAKLSRLTGSDKPLIVLT 121

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +  + +  +   E  +   + +  G+ V    +++ L    Y R       G + V G  
Sbjct: 122 TVNAAVQRVPVREIVAAQALSVAPGNVVPMDSIVAWLEHNGYSRVSTVREAGEYAVRGGI 181

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +++FP+ L D   R   FG+ +E I  F   T + +  +  + +   S +     T+   
Sbjct: 182 LDLFPAGL-DQPVRFDFFGDQLESIRTFDAETQRTLHTMRGLDLVPVSEFQLVTETIRRF 240

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
                     R+  +   G      +L   ++              +E++          
Sbjct: 241 ----------RMGYVATFGAPHPDDQLYAAVS-------EGRRHPGMEHWLPLF-----Q 278

Query: 456 EPPPTLFEYIPEDSLLFV-----DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
           E   TLF+Y+ + + + +     D +     QI+  Y                 P   D 
Sbjct: 279 ERMDTLFDYL-KATPVAIEPQSEDAARERFTQIADYYDARREAMDQPGSGAIYKPLPPDQ 337

Query: 511 RPLRFEEWNCLRPTTIVVSATP 532
             L   EW        +   TP
Sbjct: 338 LYLTDSEWTARLEGVPLARLTP 359



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 96/261 (36%), Gaps = 38/261 (14%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + +  I  +  VD    +R+     + +   + +     +
Sbjct: 772  HVLTLSATPIPRTLQLAMTGVRDLSIIASPPVDRLA-VRTFVAPHDPLMIREALLRERYR 830

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       ++ ++L +    ++V   H ++      +I+     GKFD+L+  
Sbjct: 831  GGQAFYVVPRIDDLAEVKDFLDKHVPEMKVAVAHGQMPPAVIEDIMSAFYDGKFDILLST 890

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+          
Sbjct: 891  TIVESGLDIPNANTLIVHRADMFGLAQ----LYQLRGRVGRSKLRAYALFTLP------- 939

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                             +HNI  Q+ +  K+++ ++ +       ++        +L  +
Sbjct: 940  -----------------QHNITAQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLLGE 982

Query: 759  KGKAHLK----SLRKQMHLAA 775
            +   H+K     L +QM   A
Sbjct: 983  EQSGHIKEVGFELYQQMLEEA 1003


>gi|167041424|gb|ABZ06176.1| putative TRCF domain protein [uncultured marine microorganism
           HF4000_006O13]
          Length = 1147

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 87/513 (16%), Positives = 176/513 (34%), Gaps = 80/513 (15%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +A+ I+      IV+AP    A  L +E           YF       +  
Sbjct: 25  LYGSSINLALAERIKNDLDFKIVIAPEINSAEILCNEIN---------YFSETGLSIE-- 73

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMI 294
             +P  +      SS + Q+   R      LL+ N D +V+++ S ++ +   + + +  
Sbjct: 74  -LLPDLEILPYDVSSPSNQVIANRSEILFQLLKGNIDVLVLNASSLLWKLPPRKYFEKES 132

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMF 353
             L +G+    +++   L    Y+R    I  G F + G  I++F P +      R+   
Sbjct: 133 FTLSVGELFSMQQIGEKLRINGYERVSTVIKPGEFCIRGSLIDLFSPLYTN--PIRIDFD 190

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
              I+ I  F   +   +  + ++ I  + HY    P  + A  + K  ++         
Sbjct: 191 DEKIDLIKLFDVDSQLTLNTINSVTIIPSEHY----PKSSLAFDFFKTNMRNAFD----- 241

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY-IPEDSLLF 472
           G  LE              +ET      + NY          E   ++++Y  P   L  
Sbjct: 242 GNQLEW--------PLYNFIETYAESHGVYNYLPLFF-----ESMSSIWDYCKPGTKLFC 288

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           V +   +I +   +    F+ +  L++     P               L+P+ +  SAT 
Sbjct: 289 VGDIKTSIKEYQKLINQRFNSQDNLSQ-----P--------------NLKPSELFFSATE 329

Query: 533 GSWELEQCQGIIVEQ----IIRPTGLVDPPVEIRSA----RTQVEDVYDEINLAAQQGLR 584
              ++ +   I ++       R    ++   + R       + ++ +   +   +    +
Sbjct: 330 QINKINEMHPINLQHQKCWKSRAHNSINF--DTRPLTAFKTSSMDKIIHGLLETSTN--K 385

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ILL+  +K     +   L E +I  R          R+    +    +  V V    + E
Sbjct: 386 ILLSAGSKNRIAFIENQLREFSIAAR----------RVSNWNEFLERRAGVFVTEKSISE 435

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
                + G+  I + +  G   S        G+
Sbjct: 436 SFITAKSGIAVIGEIELFGRRSSTRKYRSPAGK 468



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 92/268 (34%), Gaps = 36/268 (13%)

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQGL 583
           + ++ATP    L    G + +  +  T   +  + +++  +Q +   +++       +G 
Sbjct: 755 LALTATPIPRTLNMAIGELKDISMIAT-PPEGRIPVKTYISQWDKSLIHEACQREISRGG 813

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM---HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           ++L         E++ E + +  + V  +   H  +K      ++      +FDVL+  +
Sbjct: 814 QVLFVHNRIDDIENMAETIRQI-MPVGSLEIAHGRMKERSLERVMMKFYNNEFDVLLATS 872

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  GLDIP    + I  AD+ G  +    L Q  GR  R+              ++   
Sbjct: 873 IIESGLDIPNANTIIINRADRFGLAQ----LHQLRGRVGRSERQSYAYLMIPPKHTL--- 925

Query: 701 IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG 760
              T   R++                E I ++    +L                    + 
Sbjct: 926 ---TNEGRQRLEA------------IEAIEDLGVGFILATHDLEIRGAGEILGDEQSGQI 970

Query: 761 KAHLKSLRKQMHLAADNLNFEEAARIRD 788
           +    SL K M   A +        +RD
Sbjct: 971 QKIGFSLYKDMLAQAID-------SLRD 991


>gi|255691931|ref|ZP_05415606.1| transcription-repair coupling factor [Bacteroides finegoldii DSM
           17565]
 gi|260622336|gb|EEX45207.1| transcription-repair coupling factor [Bacteroides finegoldii DSM
           17565]
          Length = 1123

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 93/248 (37%), Gaps = 20/248 (8%)

Query: 159 QLLKGIHSREKVQLLL--GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            ++K +     VQ +   G+  S  +   + +++    P + +  +   A   Y +    
Sbjct: 17  AVMKRLLKDTSVQTVFCGGLYASAASLFSSVLVQEGGCPFVFILGDLEEAGYFYHDLTQI 76

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIV 274
                V +F S +          R+  Y +K+++     + +R      L   E+  CIV
Sbjct: 77  LGSETVLFFPSSFR---------RSIKYGQKDAAN----EILRTEVLSRLQKGEKGLCIV 123

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
               +    + S +  S   ++L +G+ V+   +   L    ++  D     G + V G 
Sbjct: 124 TYPDALAEKVVSRKELSNKTLKLSVGEKVDTTFITDVLHSYGFEYVDYVYEPGQYAVRGS 183

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I++F S   +  +R+  FG+++E +  F   +       + + I              +
Sbjct: 184 IIDVF-SFASEYPYRIDFFGDEVESVRTFEVESQLSREKKKEVSIVP--DLAVTGEVTTS 240

Query: 395 AMKYIKEE 402
            + +I +E
Sbjct: 241 FLDFIPKE 248



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +   +V  + D IN    +
Sbjct: 709 TLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFNEEV--ITDAINFEMSR 766

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++           +L   +     + RV   H +++  +  +II D     +DVL+  
Sbjct: 767 NGQVFFVNNRIANLPELKAMIERHIPDCRVAIGHGQMEPAQLEKIILDFVNYDYDVLLAT 826

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+ N K   Y      S   
Sbjct: 827 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRS-NKKAFCYLLAPPLSSLT 881

Query: 700 AIDETTRRRE 709
           A  E  RR +
Sbjct: 882 A--EGKRRLQ 889


>gi|332971662|gb|EGK10611.1| transcription-repair coupling factor [Psychrobacter sp. 1501(2011)]
          Length = 1243

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 108/356 (30%), Gaps = 47/356 (13%)

Query: 188 VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEK 247
           V     R  +V+  ++    Q+ +E         V                P  +T    
Sbjct: 51  VANVANRLKVVVTKDQNQLNQIETELAFCGVDAYV---------------FPDWETLTYD 95

Query: 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
           E S ++ I   R +    +  ++  +++S  + +  +            L +GD  +   
Sbjct: 96  ELSPHQDIVSERINLLTEM-PKSGILLISIQTLMQRVAPPSWLIGQHFDLSVGDVFDINA 154

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
               L    Y+  D     G F V G  I+IF +  +    R+ +F N+IE I  F P T
Sbjct: 155 QREMLASAGYRAVDNVFEPGEFAVRGSVIDIF-AMGQPFPLRLDLFDNEIETIKFFNPQT 213

Query: 368 GQKIRNV----------------ETIKIYANSHYVTPRPTLNTAMKYIK----EE--LKM 405
            + +                   +      +   +   P ++  +   +    +E  L+ 
Sbjct: 214 QRTLSTQTLVDIVEARSDADSASKHDLTVESLSLLHKLPDVSKPITQFQILPAKEFPLEE 273

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                      +    +  R     + +    +   +E Y               LF Y 
Sbjct: 274 GRETFRNNFAAM-FPNVSSRKFELHKDVMAGIASSGLEYYQPLFFDLEDWSNTGHLFSYF 332

Query: 466 PEDSLLFVDESHVT-----IPQISGMYRGDFH--RKATLAEYGFRLPSCMDNRPLR 514
           P DSL  +DE+          QI   Y    H   K  L      LPS   N  L 
Sbjct: 333 PNDSLFIIDENIAESQADYWSQIQRRYEERRHDIDKPILEPKLLYLPSNETNERLN 388



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 64/177 (36%), Gaps = 7/177 (3%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQGL 583
            ++ ++ATP    L      + +  I  T              +   +  + I     +G 
Sbjct: 839  SLSMTATPIPRTLNMALTGMRDMSIIATPPARRLAIKTFVMQKTNQLMKEAILRELLRGG 898

Query: 584  RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
            ++ L        E + E + E     R    H ++      ++++     KF+VLV   +
Sbjct: 899  QVYLLHNDVASIERMAENIRELVPEARVGVAHGQMNERGLEQVMQQFYHKKFNVLVCTTI 958

Query: 642  LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +  G+D+P    + I  ADK G  +    L Q  GR  R+ +           K ++
Sbjct: 959  IETGIDVPNANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYCYLLVPSIKGLK 1011


>gi|327313943|ref|YP_004329380.1| transcription-repair coupling factor [Prevotella denticola F0289]
 gi|326946335|gb|AEA22220.1| transcription-repair coupling factor [Prevotella denticola F0289]
          Length = 1175

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 86/245 (35%), Gaps = 17/245 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  AI ++ + +    K   L G+  S      A + E  +   + +  +   A   Y++
Sbjct: 4   QAGAIQKIQEDVS--VKTVFLQGLVASAAPVFFASIAERWKTTTVFVLNDNDEAGYFYND 61

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL----- 267
            K       V       D      + P +     K    +   + +R      L      
Sbjct: 62  LKT------VAMPQEGEDRVADVLFFPSSYRRAVKYGQRDAGNEILRTEVLTRLSALASE 115

Query: 268 ---ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
               R   IV    +    + S +   +  + L +G  ++  E+  +L    +   D   
Sbjct: 116 EDGTRPLYIVTDPSALSELVVSKKQLDERRLTLSVGQHIDIIEVEKTLRSFGFTETDYVY 175

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
             G F V G  ++++ S+  ++ +R+  FG+DIE I  F   T      ++ ++I     
Sbjct: 176 EPGQFAVRGSIVDVY-SYSNELPFRIDFFGDDIETIRTFEVETQLSDEKLKRVEIVPELM 234

Query: 385 YVTPR 389
            ++  
Sbjct: 235 ILSEE 239



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     I+R       P++   A    E + D IN    +  
Sbjct: 755 TLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEIATFSHEVIADAINFEMSRNG 814

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   + +     R    H ++K  E  +I+       +DVL+   +
Sbjct: 815 QVYFVNDRISNLQEIANLIRKYVPDCRVAIGHGQMKPEELEKIVMGFMNYDYDVLLSTTI 874

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I DA + G     + L Q  GR  R+ N K   Y   +      A+
Sbjct: 875 VENGIDISNANTIIINDAHRFGL----SDLHQMRGRVGRS-NKKAFCY---LLAPPLAAL 926

Query: 702 DETTRRREKQLE 713
           +   RRR + LE
Sbjct: 927 NTEARRRLEALE 938



 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           TVL  +  +   + L +  +RV Y+       +  +++ DL  GK ++LVG + L+ + +
Sbjct: 663 TVLAFQHYQTFKKRLKDMPVRVDYLSRARSARQTRQVLADLAEGKINILVGTHKLIGKSV 722

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQ 673
              + GL+ I +  K G + +K  L Q
Sbjct: 723 KWNDLGLLIIDEEQKFG-VSTKEKLRQ 748


>gi|330955723|gb|EGH55983.1| transcription-repair coupling factor [Pseudomonas syringae Cit 7]
          Length = 188

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 78/194 (40%), Gaps = 15/194 (7%)

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
           +   A +L  E K F P   V +F             P  +T      S ++ I   R +
Sbjct: 3   DSQSAERLEQELKFFAPTLPVLHF-------------PDWETLPYDLFSPHQDIISQRIA 49

Query: 262 ATRSLLERND-CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           +   L E     +VV   + ++ +   +      + L +G  ++ + + + L    Y+  
Sbjct: 50  SLYRLPELEHGVLVVPITTALHRLAPTKFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYV 109

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D     G F V G  I++FP     + +R+ +F ++IE +  F P T + I  VE++++ 
Sbjct: 110 DTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFDDEIETLRTFDPDTQRSIDKVESVRLL 168

Query: 381 ANSHYVTPRPTLNT 394
               +   +  +  
Sbjct: 169 PAREFPLQKEEVTR 182


>gi|328948120|ref|YP_004365457.1| transcription-repair coupling factor [Treponema succinifaciens DSM
           2489]
 gi|328448444|gb|AEB14160.1| transcription-repair coupling factor [Treponema succinifaciens DSM
           2489]
          Length = 1246

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 94/583 (16%), Positives = 189/583 (32%), Gaps = 67/583 (11%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM-----------------QRPAI 197
           AAI          E    + G+ GS  +F + +  E                   Q+  +
Sbjct: 26  AAIK--CADAKPEEFPLQISGLKGSLPSFFIRQTEERYRQNCIHKTQYENKFFQFQKDIV 83

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++ P +  A +  ++    F  ++VE F   +    P     +      + + I  ++  
Sbjct: 84  IIVPTQKEADECETDLNTVF-EDSVEIFKFPWWGTIPYRAAAKGSAVFGERAGILAKL-- 140

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
              +      E+    +++  + +  +        ++  LK G   + ++L   L +Q Y
Sbjct: 141 ---AVKNPFSEKTRIFIITQRAFLTPVPPASYTKTLVTVLKKGQEFDPEKLAEKLTEQGY 197

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
            R     ++G F + G+ +EIF S  E  A R+    + I +I  F   T     N+E +
Sbjct: 198 LRVPKIGMKGEFVLRGEVLEIFMS-GEKYAHRIVFDFDTISQIKLFDSETQTSKENIEHL 256

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            IY     +         ++ ++ E K       K    L  +  +Q        +    
Sbjct: 257 VIYPQKEIIWTEE----FIEKLESEWKKEDEAGIKNDFALYDKAKKQSTNEHSAEVNKNK 312

Query: 438 SCQSIENYSRYLTGRNPGEPPPT---LFEYIPEDSLLFVD-----ESHVTIPQISGMYRG 489
           + +S  N    +     G    T   L +   ++  L +      E   T+ ++      
Sbjct: 313 TDKSQANEQSDINKNEAGIKNNTNNRLLD--KKNIHLALTGAAKQEKDRTLAELIEFKET 370

Query: 490 DFHRKATLAEYGF---RLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGSWELEQCQGIIV 545
           +         +      L    +N  + F +W+ L     ++      ++ LE+    + 
Sbjct: 371 EGEELYYPVLFDKLYSILDYLTNNTDVYFFDWDRLVNAEKMLENEYTVAYRLERQNLPVF 430

Query: 546 EQIIRPTGLVDPPVEIRS-ARTQVEDVYDEINLAAQQGLRILLTVLTKRMA--------- 595
                     +  +E +     +  D         Q       T L  +           
Sbjct: 431 PPATMQLDFFNLAIECKKLVAFRTLDTLSNSEENIQDKSVSFNTSLEIKSQAGQSYFGNI 490

Query: 596 ----EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
               E L+ +L E+     +  +  +TL   EII++       VL     L  G    + 
Sbjct: 491 NYLKEQLSSFLKEKYNIFVFADNGNQTLRIKEIIKEFCDSGVQVL--PQALTAGFMFSDE 548

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
            L+ I + +  G  ++    I       R VNSK I     +T
Sbjct: 549 KLLVIQENEIFGRKKNTPKSI-------RKVNSKPIDTFVDLT 584



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 68/187 (36%), Gaps = 11/187 (5%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDVYDEINLAAQQGL 583
             + +SATP    L      I +  +  T   +  P+E        E V   I    Q+G 
Sbjct: 857  CLAMSATPIPRTLHMSLLKIRDMSLLTTPPQNRQPIETAIEEYNDEKVARAIRNEVQRGG 916

Query: 584  RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
            ++          E+    L      + V   H ++ + E  +I R  ++G F +LV   +
Sbjct: 917  QVFYLHNRVETLEETRLKLENLVPEMLVETAHGKMTSEELDDIFRRFKMGGFHILVATTI 976

Query: 642  LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            +  G+DIP    + I  AD  G     + L Q  GR  R+             K    A+
Sbjct: 977  IENGIDIPNVNTIIIDRADMYG----VSQLYQLRGRVGRSDRKAYAYLFYPQNK----AL 1028

Query: 702  DETTRRR 708
             E   +R
Sbjct: 1029 SEVAMKR 1035



 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 90/296 (30%), Gaps = 53/296 (17%)

Query: 15  IQSISTRVDDLDYFSFEEKQLEVDKTMVADA-------MRRIRSEAGKHRKNAAKRMLIH 67
           I+ +     + DY   E      D+ +            R I SE  K R +      I 
Sbjct: 602 IERVKAMGTERDYIKLE----YADEEIAFVPIEQVNMVQRYIGSENEKPRLD-----RIG 652

Query: 68  QRENTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHR 127
            +  +A K + Q +                 +    + L  L                 R
Sbjct: 653 SKNWSARKAKVQQK-----------------VEEIAEKLIDLYSKR----------QASR 685

Query: 128 SWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTM 185
            +     ++    F+    Y  + DQ +A  ++   +       +L+ G  G GKT   M
Sbjct: 686 GFPFPKDTEWNAAFEAAFPYEDTPDQFSATQEIKADMEKPVPMDRLVCGDVGYGKTEIAM 745

Query: 186 AKVIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243
               +A+   +    +AP  ILA Q +   +  F +  V            E        
Sbjct: 746 RAAFKAVMGGKQVAFLAPTTILAEQHFENSQERFKNFPVTIAQLSRFVSPTE-----QKK 800

Query: 244 YIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLK 298
            I K +S    I    H    + ++ +N  +++      +G+   E    +   + 
Sbjct: 801 IISKIASGEIDIIIGTHRILQKDVIFKNLGLMIIDEEQRFGVKDKEKLKTLKTNID 856


>gi|153807964|ref|ZP_01960632.1| hypothetical protein BACCAC_02250 [Bacteroides caccae ATCC 43185]
 gi|149129573|gb|EDM20787.1| hypothetical protein BACCAC_02250 [Bacteroides caccae ATCC 43185]
          Length = 1141

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/316 (17%), Positives = 110/316 (34%), Gaps = 33/316 (10%)

Query: 159 QLLKGIHSREKVQLLL--GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            ++K +     VQ +   G+  S  +   + +++    P + +  +   A   Y +    
Sbjct: 35  AMMKRLLKDTSVQTIFCGGLYASAASLFSSILVQEGGCPFVFILGDLEEAGYFYHDLTQV 94

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--ERNDCIV 274
                V +F S +          R+  Y +K+++     + +R      L   E+  CIV
Sbjct: 95  LGTETVLFFPSSFR---------RSIKYGQKDAAN----EILRTEVLSRLQKGEKGLCIV 141

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
               +    + S +  S   ++L +G+ V+   +   L    ++  D     G + V G 
Sbjct: 142 TYPDALAEKVVSRKELSDKTLKLNVGEKVDTTFITDVLHSYGFEYVDYVYEPGQYAVRGS 201

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I++F S   +  +R+  FG+++E I  F   +       E + I              +
Sbjct: 202 IIDVF-SFASEYPYRIDFFGDEVESIRTFEVESQLSREKKEGVSIVP--DLAVTGDVTTS 258

Query: 395 AMKYIKEE----------LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIEN 444
            + +I +E          L+ R+  +  E  L       Q +  +  +          E 
Sbjct: 259 FLDFIPKETTLAMRDFLWLRERIQVVHDEA-LTPQAIAVQEVEENGGITLEGKLIDGSEF 317

Query: 445 YSRYLTGR--NPGEPP 458
             R L  R    G  P
Sbjct: 318 TVRALDFRRLEFGNKP 333



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 70/196 (35%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +   +V  + D IN    +
Sbjct: 727 TLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFNEEV--ITDAINFEMSR 784

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++           +L   +     + RV   H +++  E  +II D     +DVL+  
Sbjct: 785 NGQVFFVNNRIANLPELKAMIERHIPDCRVAIGHGQMEPAELEKIIFDFVNYDYDVLLAT 844

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+ N K   Y      S   
Sbjct: 845 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRS-NKKAFCYLLAPPLSSLT 899

Query: 700 AIDETTRRREKQLEHN 715
           A      RR  Q   N
Sbjct: 900 A----EGRRRLQAIEN 911


>gi|123968563|ref|YP_001009421.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           str. AS9601]
 gi|123198673|gb|ABM70314.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
           str. AS9601]
          Length = 1170

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 99/544 (18%), Positives = 199/544 (36%), Gaps = 91/544 (16%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +L+K I S+     ++G +   K+  +  + +  ++  +++ PN  +A +    F++   
Sbjct: 18  ELVKRI-SKNNELNIVGSSRYAKSIILDSIAKKEKKNILLICPNVEIAYKWIGYFES-IN 75

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC---IVV 275
             AV Y       Y P+ ++P +     K      +I+  + +    L+++      IV+
Sbjct: 76  DKAVLY-------YPPKEHLPYSSINKSK------EIEFSQLTVLSKLIKKEKNELNIVI 122

Query: 276 SSVSCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           S+   +   + +     +  + L+ G  +E +EL + L    Y + ++    G +   G+
Sbjct: 123 STERSLQPHLINKNLLIENKLNLQKGVQIEIQELANKLSLLGYTKDNVTSTEGFWSRRGE 182

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I+I+P + E    R+  F N IE+I E+ P T + + ++  I+I      +  +     
Sbjct: 183 IIDIYPVNNE-FPIRLEFFDNVIEKIREYDPHTQKTLESINNIEIIQAGFNLLIKDK--- 238

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
                       L    K G             ++ E +          N  RYL     
Sbjct: 239 ------------LNNFSKNGI------------FNSEDINKN-------NLDRYLGIIE- 266

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR--------KATLAEYGFRLPS 506
            + P  + ++I  +++L +DE        +  Y+                L      L  
Sbjct: 267 -KTPSNIIDFIDRETILVIDELEDCTKFANNWYQDSESNFDNCEYELNENLKNNDINLQ- 324

Query: 507 CMDNRPLRF-EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565
              N  L+F E  N L    ++       +E E  +  I  + +           I S  
Sbjct: 325 AKPNLHLKFDEILNSLGNFNLI-----KFYEFE-SKTNIDNKFLLNDKR------INSYS 372

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
             +  + ++IN   +   ++ +          L   L+E      ++++        E  
Sbjct: 373 KNIGKLSNDINKNIKNNEKVWILSAQPLRTRTL---LFEHECNTNFLNNPNDI---DEAF 426

Query: 626 RDLRLGKFDVLVGINLLR-EGLDIPECGLVAILDADKEGFLRSKTSLIQT--IGRAARNV 682
           + +      +L   N    EG  +P   +V I   DKE F  S+ SL     I R  R+V
Sbjct: 427 KSINNSTPLILKNKNNYEIEGFYLPIWKVVLI--TDKELF--SQQSLFHNVFIRRKKRSV 482

Query: 683 NSKV 686
           NS +
Sbjct: 483 NSNI 486



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 76/193 (39%), Gaps = 13/193 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-VEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +  T       ++   A   ++ +   IN    +G 
Sbjct: 764 VLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRSIKTYLAEIDMDVIRTAINQELDRGG 823

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I   +            L      ++++  H ++   E    +     G+ D+++   +
Sbjct: 824 QIFYVLPRISDINQALNKLKNIFPSLKFIVAHGQMNETELENAMIAFNNGEVDLMICTTI 883

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLA 700
           +  GLDIP+   + I D+ K G  +    L Q  GR  R +V +   L+   I K     
Sbjct: 884 IESGLDIPKVNTIIIEDSHKFGLSQ----LYQLRGRVGRSSVQAHAWLFYPDINK----- 934

Query: 701 IDETTRRREKQLE 713
           I++  ++R K ++
Sbjct: 935 INDAAKQRLKAIK 947



 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAP 201
            Y P+ DQ  A+ ++   +   +   +L+ G  G GKT    + I       +  I++AP
Sbjct: 611 PYQPTPDQITAVEEIKSDMESEKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQVILLAP 670

Query: 202 NKILAAQLYSEFKNFFPH 219
             ILA Q +    N F  
Sbjct: 671 TTILAQQHWRTISNRFSP 688


>gi|323142048|ref|ZP_08076896.1| transcription-repair coupling factor [Phascolarctobacterium sp. YIT
           12067]
 gi|322413435|gb|EFY04306.1| transcription-repair coupling factor [Phascolarctobacterium sp. YIT
           12067]
          Length = 1090

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 92/233 (39%), Gaps = 21/233 (9%)

Query: 155 AAIAQLLKGIHSREKVQ--LLLGVTGSGKTFTMAKVIEAMQRP--AIVMAPNKILAAQLY 210
           AA+ ++ +    ++K Q  +L G+ GS K    A   + +        +  ++       
Sbjct: 10  AAVKEVRQAAEYQKKKQACILTGLAGSSKPVFFAAADKLLGGKGSMAFITASREEIRTYR 69

Query: 211 SEFKNFFPH-NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER 269
            E    +P     E +     + Q                + + ++   R +A R L   
Sbjct: 70  RELNYLYPDLPMQELYPVSLPHVQ--------------ADTQSLELQAGRAAALRFLSGE 115

Query: 270 NDCIVVSSVSCIYGI-GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
              IV  +   +          S   +QL +G+  EQ+ + ++L+   Y+R +     G 
Sbjct: 116 ERGIVFITAEALQQKQLRPSGMSGKALQLAVGEEHEQRNIAAALLDLGYERTEQVDALGQ 175

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           F + GD ++++P +    A R+  F N+++ +  F   T + ++ + +IKI  
Sbjct: 176 FCLRGDILDVYPINSS-TAVRIEWFDNELDAMRSFDVDTQRSLQTLTSIKIAP 227



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 64/187 (34%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L        +  +I        PVE   +      + + +    ++G 
Sbjct: 699 VLSLSATPIPRTLHMALVNGRDMSVIESPPEDRLPVETYVSEYNDGMIKEALERELRRGG 758

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           RI          E L   L      I ++  H ++      + +     G  DVL+   +
Sbjct: 759 RIYYISNRVSALEPLAAKLRRLVPGISIKIAHGQMNEDALEDAMITFYEGGCDVLLCTTI 818

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+P    + I  AD  G  +    L Q  GR  R+       +     K    A+
Sbjct: 819 VENGLDVPLANTIIIDGADNFGLSQ----LYQMRGRVGRSSRLAYAYFVYQPNK----AL 870

Query: 702 DETTRRR 708
            E   +R
Sbjct: 871 SEIAEKR 877



 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 14/139 (10%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K+T   + + +T   + L RL           +I   H         KD   F+    Y 
Sbjct: 499 KRTTAKAAKAITELAEELLRLYAQR-------QIMPGHAFSPDCQLQKD---FEAAFPYE 548

Query: 149 PSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAM--QRPAIVMAPNKI 204
            + DQ  AIA++   +   +   +LL G  G GKT   +    +A+   +   V+AP  +
Sbjct: 549 ETPDQLKAIAEIKADMEKPQPMERLLCGDVGYGKTEVALRAAFKAVLDGKQVAVLAPTTV 608

Query: 205 LAAQLYSEFKNFFPHNAVE 223
           LA Q Y  FK    +  VE
Sbjct: 609 LAQQHYITFKERVRNFGVE 627


>gi|224540214|ref|ZP_03680753.1| hypothetical protein BACCELL_05127 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518176|gb|EEF87281.1| hypothetical protein BACCELL_05127 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1131

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/391 (15%), Positives = 126/391 (32%), Gaps = 42/391 (10%)

Query: 159 QLLKGIHSREKVQLLL--GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           + + G+     V+ L   G+  S  +   + +++  + P + +  +   A   Y +    
Sbjct: 18  EAMSGLLKNPSVRTLFCGGLCASAASLFSSVLVQRGEFPFVFILGDLEEAGYFYHDLTQV 77

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIV 274
              + V +F S +              Y +K+++     + +R      L +  +  C+V
Sbjct: 78  LGTDKVLFFPSSFRRAIK---------YGQKDAAN----EILRTEVLSRLQKGEEGLCVV 124

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
               +    + S +      ++L  G++V+   ++  L    ++  D     G + V G 
Sbjct: 125 TYPDALAEKVVSRKELGDKTLKLHSGENVDTNFIMEVLRSYGFEYVDYVYEPGQYAVRGS 184

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN- 393
            I++F S   +  +R+  FG+++E I  F   T       ++I I  +      +   N 
Sbjct: 185 IIDVF-SFSSEFPYRIDFFGDEVESIRTFEVETQLSKEKKDSIVIVPDLSRSLEQGGANG 243

Query: 394 ----------TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE-TTGSCQSI 442
                      A+  +++ L +R          L  Q +  R   +   +          
Sbjct: 244 MVSFLDFLSADAVLAMRDLLWLRERIQTVHDETLTPQAIAAREAEESGCITLDGKLIDGS 303

Query: 443 ENYSRYLTGR--NPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
           E   R L  R    G  P         D+ +  D S    P     +           E 
Sbjct: 304 EFTLRALDFRRMEFGNKPTG-----TPDATITFDTSAQ--PIFRKNFDMVAESFKEYMEK 356

Query: 501 GFRLPSCMDNRPLR---FEEWNCLRPTTIVV 528
           G+ L  C D+          +          
Sbjct: 357 GYALYICSDSMKQTDRIRAIFEDRGDQIAFT 387



 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 71/196 (36%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+       P+  E+ +   +V  + D IN    +
Sbjct: 715 TLTMTATPIPRTLQFSLIGARDLSVIQTPPPNRYPIQTEVHTFNEEV--IADAINFEMSR 772

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++ L         +L   +     + R+   H +++  E  +II       +DVL+  
Sbjct: 773 NGQVFLVNNRISNLPELKAMIERHIPDCRIAIGHGQMEPTELEKIIFGFVNYDYDVLIAT 832

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 833 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLSSL-- 886

Query: 700 AIDETTRRREKQLEHN 715
                  RR  Q   N
Sbjct: 887 ---TPEARRRLQAIEN 899


>gi|218283272|ref|ZP_03489327.1| hypothetical protein EUBIFOR_01916 [Eubacterium biforme DSM 3989]
 gi|218215962|gb|EEC89500.1| hypothetical protein EUBIFOR_01916 [Eubacterium biforme DSM 3989]
          Length = 1131

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 92/269 (34%), Gaps = 18/269 (6%)

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
              +A      ++  IV+  N+  A QLY   K     N    FV               
Sbjct: 37  ALCLASAFIQDKQTRIVVKKNRYEAQQLYQRLKPLI--NDTLLFVMEESLR--------- 85

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
                  SS  ++ +++         ++   I+ ++ +    +   E +  +  + ++  
Sbjct: 86  --VQAIASSPEDKQEQLYVLTQLVKEDKPRIIICNTAAFFRYLPDKELFRNLCFKFEVDQ 143

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
            +   EL   L +  Y + +      T+   G  ++++     D   R+  F   IE I 
Sbjct: 144 EITMTELKQKLNRAGYTKVNYVDRPCTYASRGGIVDVY-CLEYDHPIRIEFFDTVIESIR 202

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
            F+  T + I  ++++ I   +  +     +    K I  EL+ +  +L ++        
Sbjct: 203 IFHEETQRTIETIDSVFINPATDLLFTDDQIEFLQKEIDSELEKQHEKLIQDD----YDF 258

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLT 450
           L   +  D   LE       +  Y  YL 
Sbjct: 259 LLDYLEKDKIALENYDIDPHLYIYFSYLN 287



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 67/193 (34%), Gaps = 13/193 (6%)

Query: 525 TIVVSATPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
            + +SATP    L+        + Q+  P  L   P++      +   V + I     +G
Sbjct: 738 VLSLSATPIPRTLQMSLIGVRTISQLNTPP-LHRHPIQTYVMENRKSVVKEIIQRELSRG 796

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIR--VRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++            + + +        V   H  ++  +  + + D    K+ +LV   
Sbjct: 797 GQVFYLYNHVSNIYSVAKNIQNMFPDAKVAVAHGRMEKNDIEQTMIDFEQEKYQILVCTT 856

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  GLDI     + I DAD+ G  +    L Q  GR  R                 Q  
Sbjct: 857 IIETGLDIANANTMIIDDADRFGLSQ----LYQIRGRVGRREKIAYCYLLVQP----QKE 908

Query: 701 IDETTRRREKQLE 713
           + E   +R K ++
Sbjct: 909 LTEQAHKRLKAIK 921


>gi|167763421|ref|ZP_02435548.1| hypothetical protein BACSTE_01795 [Bacteroides stercoris ATCC
           43183]
 gi|167698715|gb|EDS15294.1| hypothetical protein BACSTE_01795 [Bacteroides stercoris ATCC
           43183]
          Length = 1128

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 79/216 (36%), Gaps = 16/216 (7%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           +     G+  S  +   + +++  + P + +  +   A   Y +         V +F S 
Sbjct: 29  RHLYCSGLCASAASLFSSVLVQQAECPFVFILGDLEEAGYFYHDLTQILGTGQVLFFPSS 88

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGS 286
           +              Y +K+++     + +R      L +  +  C+V    +    + S
Sbjct: 89  FRRAIK---------YGQKDAAN----EILRTEVLSRLQKGEEGLCVVTYPDALAEKVVS 135

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            E      ++L  G+ V+   +   L    ++  D     G + V G  I++F S   + 
Sbjct: 136 REELGDKTLKLHAGEKVDMDFVTEVLRSYGFEYVDYVYEPGQYAVRGSIIDVF-SFSSEF 194

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
            +R+  FG+++E I  F   +       E I I  +
Sbjct: 195 PFRIDFFGDEVESIRTFEVESQLSKEKKEEIVIVPD 230



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 75/191 (39%), Gaps = 16/191 (8%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+       P+  E+ +   ++  + D IN    +
Sbjct: 714 TLTLTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFGDEI--ITDAINFEMSR 771

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIR---VRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++           +L + + ERNI    V   H +++  E  +II D     +DVL+ 
Sbjct: 772 NGQVFFVNNRISNLSEL-KAMIERNIPDCRVCIGHGQMEPAELEKIILDFVNYDYDVLLA 830

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DIP    + I  A   G     + L Q  GR  R+              S+ 
Sbjct: 831 TTIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLSSLT 886

Query: 699 LAIDETTRRRE 709
           L   E  RR +
Sbjct: 887 L---EAKRRLQ 894


>gi|192291316|ref|YP_001991921.1| transcription-repair coupling factor [Rhodopseudomonas palustris
           TIE-1]
 gi|192285065|gb|ACF01446.1| transcription-repair coupling factor [Rhodopseudomonas palustris
           TIE-1]
          Length = 1172

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/422 (15%), Positives = 132/422 (31%), Gaps = 50/422 (11%)

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           V+  +     QL    + F P   V  F             P  D       S +  I  
Sbjct: 52  VICRDGPRMQQLARSLEFFAPDLDVLQF-------------PAWDCQPYDRVSPHAGILA 98

Query: 258 MRHSATRSLL-----ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
            R +    L      ++   I+ +  + +  +   E  S   + +  G+ V  + +++ L
Sbjct: 99  QRVTTLAKLSRLTGSDKPLIILTTVNAAVQRVPVREIVSAQALSVAPGNVVPMESIVAWL 158

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
               Y R       G + V G  +++FP+ LE    R   FG+ +E I  F   T + + 
Sbjct: 159 EHNGYSRASTVREAGEYAVRGGILDLFPAGLE-QPVRFDFFGDQLESIRTFDAETQRTLH 217

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            +  + +   S +     T+             R+  +   G      +L   ++     
Sbjct: 218 TMRGLDLVPVSEFQLVTETIRRF----------RMGYVATFGAPHPDDQLYAAVS----- 262

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV-----DESHVTIPQISGMY 487
                    +E++          E   TLF+Y+ + + + +     D +     QI+  Y
Sbjct: 263 --EGRRHPGMEHWLPLF-----QERMDTLFDYL-KGTPVAIEPQSEDAARERFKQIADYY 314

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
                            P   D   L   EW        +   TP  + L +    +++ 
Sbjct: 315 DARREAMDQPGSGAIYKPLPPDQLYLTDSEWTARLEGVPLARLTP--FALPEDTSNVIDA 372

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
             R  G    P    S     E +   +        ++++ + ++   + +   L +  +
Sbjct: 373 GARA-GRNFAPERADSNVNVFETLVAHVYALQAARKKVVIALWSEGSRDRMASMLKDHKL 431

Query: 608 RV 609
             
Sbjct: 432 VA 433



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 96/261 (36%), Gaps = 38/261 (14%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + +  I  +  VD    +R+     + +   + +     +
Sbjct: 772  HVLTLSATPIPRTLQLAMTGVRDLSIIASPPVDRLA-VRTFVAPHDPLMIREALLRERYR 830

Query: 582  GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +    V       ++ ++L +    ++V   H ++      +I+     GKFD+L+  
Sbjct: 831  GGQAFYVVPRIDDLAEVKDFLDKHVPEMKVAVAHGQMPPAVIEDIMSAFYDGKFDILLST 890

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+          
Sbjct: 891  TIVESGLDIPNANTLIVHRADMFGLAQ----LYQLRGRVGRSKLRAYALFTLP------- 939

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                             +HNI  Q+ +  K+++ ++ +       ++        +L  +
Sbjct: 940  -----------------QHNITAQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLLGE 982

Query: 759  KGKAHLK----SLRKQMHLAA 775
            +   H+K     L +QM   A
Sbjct: 983  EQSGHIKEVGFELYQQMLEEA 1003


>gi|325853962|ref|ZP_08171478.1| transcription-repair coupling factor [Prevotella denticola CRIS
           18C-A]
 gi|325484299|gb|EGC87229.1| transcription-repair coupling factor [Prevotella denticola CRIS
           18C-A]
          Length = 1175

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 86/245 (35%), Gaps = 17/245 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  AI ++ + +    K   L G+  S      A + E  +   + +  +   A   Y++
Sbjct: 4   QAGAIQKIQEDVS--VKTVFLQGLVASAAPVFFASIAERWKTTTVFVLNDNDEAGYFYND 61

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL----- 267
            K       V       D      + P +     K    +   + +R      L      
Sbjct: 62  LKT------VAMPQEGEDRVADVLFFPSSYRRAVKYGQRDAGNEILRTEVLTRLSALASE 115

Query: 268 ---ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
               R   IV    +    + S +   +  + L +G  ++  E+  +L    +   D   
Sbjct: 116 KDGTRPLYIVTDPSALSELVVSRKQLDERRLTLSVGQHIDVIEVEKTLRSFGFTETDYVY 175

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
             G F V G  ++++ S+  ++ +R+  FG+DIE I  F   T      ++ ++I     
Sbjct: 176 EPGQFAVRGSIVDVY-SYSNELPFRIDFFGDDIETIRTFEVETQLSDEKLKRVEIVPELM 234

Query: 385 YVTPR 389
            ++  
Sbjct: 235 ILSEE 239



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     I+R       P++   A    E + D IN    +  
Sbjct: 755 TLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEIATFSHEVIADAINFEMSRNG 814

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   + +     R    H ++K  E  +I+       +DVL+   +
Sbjct: 815 QVYFVNDRISNLQEIANLIRKYVPDCRVAIGHGQMKPEELEKIVMGFMNYDYDVLLSTTI 874

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I DA + G     + L Q  GR  R+ N K   Y   +      A+
Sbjct: 875 VENGIDISNANTIIINDAHRFGL----SDLHQMRGRVGRS-NKKAFCY---LLAPPLAAL 926

Query: 702 DETTRRREKQLE 713
           +   RRR + LE
Sbjct: 927 NTEARRRLEALE 938



 Score = 38.2 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           TVL  +  +   + L +  +RV Y+       +  +++ DL  GK ++LVG + L+ + +
Sbjct: 663 TVLAFQHYQTFKKRLKDMPVRVDYLSRARSARQTRQVLADLAEGKINILVGTHKLIGKSV 722

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQ 673
              + GL+ I +  K G + +K  L Q
Sbjct: 723 KWNDLGLLIIDEEQKFG-VSTKEKLRQ 748


>gi|332829530|gb|EGK02179.1| hypothetical protein HMPREF9455_01813 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 1108

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/373 (14%), Positives = 112/373 (30%), Gaps = 48/373 (12%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           +  I  + K     G+ GS      A +        + +  +   A   Y +       +
Sbjct: 19  VVNILPKHKSLYAKGLQGSSAAMFAAAIYHKTDNCFLYILNDLESAGYFYHDLIQILDTD 78

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV--SSV 278
            V +F S Y                 K   I+   + +R      L   N  +++     
Sbjct: 79  KVLFFPSAYKRAI-------------KYGQIDAANEILRTEVMGKLQTDNKHLIIITYPE 125

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           +    + +     +  + +   + V++  +   L    ++  D     G + + G  +++
Sbjct: 126 ALAEKVVAKSILEKNTIHINANEEVDRNFVSEMLDSFGFEYVDYVYEPGQYAIRGSILDV 185

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
           F S   +  +R+  FG+++  I  F   T      ++ I+I             ++ +K 
Sbjct: 186 F-SFSYEFPYRIDFFGDEVNTIRTFDIETQLSKERLQQIQIIP--DMQKSDLDRDSLLKL 242

Query: 399 I-------------KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
           I              EE    +          E ++  Q    D E      +       
Sbjct: 243 IPKDSIIGFKDFAWAEEKVESVYNDSAILDNPEYEKDIQNKLSDREEYANLINGFRH--- 299

Query: 446 SRYLTGRNPGEPPPTLFEY-------IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA 498
             +   R  G P  T  E+         ++  L  +  H  I +   +Y      K    
Sbjct: 300 -IHFGARAGGIPEAT-IEFETNLQPPFHKNFDLISETFHKDIGKGFRIYILSDSEKQH-- 355

Query: 499 EYGFRLPSCMDNR 511
               RL S  ++R
Sbjct: 356 ---KRLQSIFEDR 365



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 67/196 (34%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +    +  + + I     +
Sbjct: 700 TLTMTATPIPRTLQFSLMGARDLSAITTPPPNRYPIQTEVHTFDPHI--IREAIEFEMSR 757

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++       +   +L + +       R +  H ++   +   +I D    ++DVL+  
Sbjct: 758 NGQVFFINNRIKNIYELEDIIRREVPDARVVVGHGQMDPAKLESVIIDFVNHEYDVLIAT 817

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +++  G+DIP    + + +A   G     + L Q  GR  R+              ++  
Sbjct: 818 SIIESGIDIPNANTIIVNNAQNFGL----SDLHQLRGRVGRSNKKAFAYLLAPPLHTL-- 871

Query: 700 AIDETTRRREKQLEHN 715
                  RR  Q   N
Sbjct: 872 ---TPEARRRLQAIEN 884



 Score = 38.5 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        A     ++ + V T     +  +   E L +   RV Y+       + 
Sbjct: 582 GKTEVAIRGAFKAVSDNKQVAVLVPTTVLAYQHYQTFRERLKDFPCRVEYISRARSANQI 641

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEG 663
            E + DL+ GK DVL+G + ++ + +   + GL+ I +  K G
Sbjct: 642 KETLNDLKEGKVDVLIGTHRIVSKDIQFKDLGLLIIDEEQKFG 684


>gi|15892836|ref|NP_360550.1| transcription-repair coupling factor [Rickettsia conorii str.
           Malish 7]
 gi|81854092|sp|Q92H58|MFD_RICCN RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|15620021|gb|AAL03451.1| transcription-repair coupling factor [Rickettsia conorii str.
           Malish 7]
          Length = 1122

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 66/373 (17%), Positives = 123/373 (32%), Gaps = 56/373 (15%)

Query: 179 SGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           + K+F  +    + +++  I+ A N+  A QLY +   F  +  + YF            
Sbjct: 9   AAKSFFAIDNFTKNLKQDFILSASNEEEALQLYKQALFFSSNENIYYF------------ 56

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERN----DCIVVSSVSCIYGIGSVESYSQM 293
            P  +T     +S N  I   R      L   N      ++  + + +  +   + +S+ 
Sbjct: 57  -PSYNTIPYDHTSPNANILSRRAETLIKLTTNNSNSNKLLITHTANLLNKLPPKDFFSKY 115

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            ++L         EL   LV+  + R    I  G F V G+ I+I        A+R+   
Sbjct: 116 FLKLSPKMKFTTDELAMFLVENSFTRNASSIDVGEFAVRGEIIDII--LSGPKAYRIHFS 173

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
              IE I EF   T    ++   + I   +  V    T+                 L   
Sbjct: 174 WGYIESIKEFDIDTQISTKSCRELIISPANEIVLNSETIGNFKNN----------YLRNF 223

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
           G       L        E + +       E            +    L +Y+ +   +F 
Sbjct: 224 GVNHTDNAL-------YEAVISGRKFTGYEQLLPLFY-----DSCSNLIDYLNDPIFIFD 271

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN-CLRPTTIVVSATP 532
           + S   I +    Y   +              +  +   L+F  +   L PT++  +A+ 
Sbjct: 272 NLSKKAILEFEHSYNDFYS-------------ARSEANKLKFNSFYPTLSPTSLYFTASE 318

Query: 533 GSWELEQCQGIIV 545
            +  LEQ   I++
Sbjct: 319 ITELLEQKNNILL 331



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  T  ++   E+ ++    + V   D +     +
Sbjct: 732 HVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRL-EVHTSVMPYDPVIIRDALLREHFR 790

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G R    V   +  ED+ + L +    + Y   + ++   +  E++ +   GKFD+LV  
Sbjct: 791 GGRSFYVVPRIKDIEDIAKQLKQIVPELSYKIAYGKMTPSKIDEVMSEFYAGKFDILVST 850

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI E   + I +AD  G  +    L Q  GR  R        YA     S + 
Sbjct: 851 TIIESGIDIAEANTMIIHNADMLGLSQ----LYQLRGRIGRGKMRG---YAYLTVASHKK 903

Query: 700 AIDETTRRREK 710
               + RR E 
Sbjct: 904 MTSHSLRRLEI 914


>gi|15639335|ref|NP_218784.1| transcription-repair coupling factor (trcF) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025577|ref|YP_001933349.1| transcription-repair coupling factor [Treponema pallidum subsp.
           pallidum SS14]
 gi|3322623|gb|AAC65332.1| transcription-repair coupling factor (trcF) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018152|gb|ACD70770.1| transcription-repair coupling factor [Treponema pallidum subsp.
           pallidum SS14]
          Length = 1140

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 75/532 (14%), Positives = 158/532 (29%), Gaps = 92/532 (17%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +   L+ + +      + G TG  +++   + +       +++ P +   A + ++  + 
Sbjct: 11  LQHALRSLRAARFPYRVEGCTGGLRSYFFGEYVRTCCAHIVLVVPTEQDVAAVCTDLAHA 70

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN----DC 272
                            P   +P   +   +  S N  +   R  A  +L +R+      
Sbjct: 71  ---------------AVPTRVLPWWGSLPYRPVSPNAHVFSHRVEALCALAQRDATAPCA 115

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
            V +  + +  +  ++    +    ++G+ +E   L + L++  Y R D       F + 
Sbjct: 116 FVFTQRALLTPVPPLDYVRTLKRSFRVGEHIEIHTLAAQLMQWGYARVDHVSACAEFSLR 175

Query: 333 GDSIEIFPSHL---EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
           G+ ++I  +        A+R+    N IE I      T   ++ V    +YA    +   
Sbjct: 176 GEILDIAAAAQAADNTQAYRIVCDFNTIERIHILAVSTCAVLQEVSACTLYAAKEILWSE 235

Query: 390 PTLNTAMKYIKEELKMRLIELEKE--GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
             +          L   L +L +     +   + L  R TY+ E           E +  
Sbjct: 236 ERIAF--------LHQNLQKLSECPAHCVPCIEELTHRKTYEGE-----------EMFYP 276

Query: 448 YLTGRNPGEPPPTLFEYI-----PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
                   E P  + EY      P        E      +       + + K  L     
Sbjct: 277 LCF-----ERPTCVLEYFRHSPSPPSVFYLDYERQHNGARALQDECRNLYHKMQL----- 326

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
                 ++ P R+          +  SA                Q+     +       R
Sbjct: 327 ----AHEHVPARWYPQPEHI--VLDFSAVCALHLHTVYFTHFFPQLPACESICLASDPAR 380

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           S    +    +E+   ++ G  + +   +                            ++ 
Sbjct: 381 SFFGNIPYFKEELLRLSKDGWHVFVFAES---------------------------EQQA 413

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
             IR L  G  DV V    L  G  IP   ++ + + +  G  R     +Q 
Sbjct: 414 LRIRALVKG-CDVTVLPCALSAGFSIPALKILIVQEGEIFGRRRKTPQSVQR 464



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 18/177 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      +    IR   L+  P E R    T ++     +   A +  
Sbjct: 750 CLSLSATPIPRTL-----HMGMLKIRDMSLLTTPPEGRLPIETVIQQFDPNLVATAIRKE 804

Query: 584 -----RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                +I          E     L + + E +I V   HS + + E  +I        F 
Sbjct: 805 LDREGQIFYLHNRIENLESVKCMLQKLVPELSICVA--HSLMGSEELEDIFERFYQKTFQ 862

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +L+   ++  G+D+P    + I  AD  G +     L   +GR+ +   + ++ Y D
Sbjct: 863 LLLSTTIIENGIDVPNANTIIIDRADMYG-VSQLYQLRGRVGRSDKKAYAYLLYYHD 918


>gi|207109633|ref|ZP_03243795.1| excinuclease ABC subunit B [Helicobacter pylori HPKX_438_CA4C1]
          Length = 109

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/79 (50%), Positives = 54/79 (68%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI 197
           +  F +++ Y P+GDQP AI  L K + +    Q L+GVTGSGKT+TMA +I    +PA+
Sbjct: 1   MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPAL 60

Query: 198 VMAPNKILAAQLYSEFKNF 216
           +M+ NK L AQLYSEFK F
Sbjct: 61  IMSHNKTLCAQLYSEFKAF 79


>gi|298253895|ref|ZP_06977482.1| transcription-repair coupling factor [Gardnerella vaginalis 5-1]
 gi|297532038|gb|EFH71013.1| transcription-repair coupling factor [Gardnerella vaginalis 5-1]
          Length = 1202

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 88/223 (39%), Gaps = 13/223 (5%)

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY-FVSYYDYYQPEAYVP 239
           ++  +A + +   +P +V+ P+   A    +  ++++  +A +   +  ++    E   P
Sbjct: 81  RSAIVAALAKK--KPVVVIVPSSRDAEDFIASVRDWYDGDAQDVAKLEAWETLPHERLSP 138

Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL-- 297
           R DT   + +       R+ H    + L     ++V  V  +  I  V      I  L  
Sbjct: 139 RADTVASRIAVF----RRLCHPENNTSLFGPIRVLVMPVRSL--IQPVVEGIGDIDPLLF 192

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           + G  +  +  +  LV+  Y R D+ + RG F V G  I++F +       R+  FG++I
Sbjct: 193 ECGKELTLEYAVKRLVENAYTRVDLVMERGEFAVRGGIIDVF-APTMTHPVRIEFFGDEI 251

Query: 358 EEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYI 399
           + I +F+    +    N+ +I                 A   I
Sbjct: 252 DTIKQFHASDQRTYGNNIASIWATPCRELQITEKICKRARSLI 294



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 9/177 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ++      +  +  +G
Sbjct: 809 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYDNSQVAACIKRELLRG 867

Query: 583 LRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++            +   + E   ++RV   H ++   +   +IRD      DVLV   
Sbjct: 868 GQVFYVHNRVEDISSVASKIQELVPDVRVAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTT 927

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    +K +
Sbjct: 928 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGHERAYAYFLYDPSKPM 980


>gi|291059734|gb|ADD72469.1| transcription-repair coupling factor [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 1155

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 75/532 (14%), Positives = 158/532 (29%), Gaps = 92/532 (17%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +   L+ + +      + G TG  +++   + +       +++ P +   A + ++  + 
Sbjct: 26  LQHALRSLRAARFPYRVEGCTGGLRSYFFGEYVRTCCAHIVLVVPTEQDVAAVCTDLAHA 85

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN----DC 272
                            P   +P   +   +  S N  +   R  A  +L +R+      
Sbjct: 86  ---------------AVPTRVLPWWGSLPYRPVSPNAHVFSHRVEALCALAQRDATAPCA 130

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
            V +  + +  +  ++    +    ++G+ +E   L + L++  Y R D       F + 
Sbjct: 131 FVFTQRALLTPVPPLDYVRTLKRSFRVGEHIEIHTLAAQLMQWGYARVDHVSACAEFSLR 190

Query: 333 GDSIEIFPSHL---EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
           G+ ++I  +        A+R+    N IE I      T   ++ V    +YA    +   
Sbjct: 191 GEILDIAAAAQAADNTQAYRIVCDFNTIERIHILAVSTCAVLQEVSACTLYAAKEILWSE 250

Query: 390 PTLNTAMKYIKEELKMRLIELEKE--GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
             +          L   L +L +     +   + L  R TY+ E           E +  
Sbjct: 251 ERIAF--------LHQNLQKLSECPAHCVPCIEELTHRKTYEGE-----------EMFYP 291

Query: 448 YLTGRNPGEPPPTLFEYI-----PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
                   E P  + EY      P        E      +       + + K  L     
Sbjct: 292 LCF-----ERPTCVLEYFRHSPSPPSVFYLDYERQHNGARALQDECRNLYHKMQL----- 341

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
                 ++ P R+          +  SA                Q+     +       R
Sbjct: 342 ----AHEHVPARWYPQPEHI--VLDFSAVCALHLHTVYFTHFFPQLPACESICLASDPAR 395

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           S    +    +E+   ++ G  + +   +                            ++ 
Sbjct: 396 SFFGNIPYFKEELLRLSKDGWHVFVFAES---------------------------EQQA 428

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
             IR L  G  DV V    L  G  IP   ++ + + +  G  R     +Q 
Sbjct: 429 LRIRALVKG-CDVTVLPCALSAGFSIPALKILIVQEGEIFGRRRKTPQSVQR 479



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 18/177 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      +    IR   L+  P E R    T ++     +   A +  
Sbjct: 765 CLSLSATPIPRTL-----HMGMLKIRDMSLLTTPPEGRLPIETVIQQFDPNLVATAIRKE 819

Query: 584 -----RILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                +I          E     L + + E +I V   HS + + E  +I        F 
Sbjct: 820 LDREGQIFYLHNRIENLESVKCMLQKLVPELSICVA--HSLMGSEELEDIFERFYQKTFQ 877

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +L+   ++  G+D+P    + I  AD  G +     L   +GR+ +   + ++ Y D
Sbjct: 878 LLLSTTIIENGIDVPNANTIIIDRADMYG-VSQLYQLRGRVGRSDKKAYAYLLYYHD 933


>gi|167957442|ref|ZP_02544516.1| excinuclease ABC, B subunit [candidate division TM7 single-cell
           isolate TM7c]
          Length = 89

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/89 (65%), Positives = 71/89 (79%)

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           MA +I   Q P +V+A NK LAAQLYSEFK FFP N V YFVSY+DYYQPEAY+  +DTY
Sbjct: 1   MANIIANYQAPTLVLAHNKTLAAQLYSEFKQFFPENEVHYFVSYFDYYQPEAYIASSDTY 60

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCI 273
           IEK+S IN++IDR+RH+AT +LL R+D I
Sbjct: 61  IEKDSKINDEIDRLRHAATTALLTRSDTI 89


>gi|13235409|emb|CAC33609.1| Mfd protein [Rickettsia montanensis]
          Length = 1121

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 122/372 (32%), Gaps = 55/372 (14%)

Query: 179 SGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           + K+F  +    + +++  I+ A N+  A QLY +   F  +  + YF            
Sbjct: 9   AAKSFFAIDNFTKNLKQDFILSASNEEEALQLYKQALFFSSNENIYYF------------ 56

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERN---DCIVVSSVSCIYGIGSVESYSQMI 294
            P  DT     +S N  I   R      L   N     ++  + + +  +   + +S+  
Sbjct: 57  -PSYDTIPYDHTSPNANILSRRAETLTKLTTNNGNSKLLITHTANLLNKLPPKDFFSKYF 115

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           ++L         EL+  LV+  + R    I  G F V G+ I+I        A+R+    
Sbjct: 116 LKLSPKMKFTTDELVMFLVENSFTRNANSIDAGEFAVRGEIIDIILPG--PKAYRIHFSW 173

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
             IE I EF   T    +    + I   +  V    T+                 L   G
Sbjct: 174 GYIESIKEFDIDTQISTKFCRELIISPANEIVLNSETIGNFKNN----------YLRNFG 223

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  L        E + +       E            +    L +Y+ +   +F +
Sbjct: 224 VNHTDNPL-------YEAVISGRKFTGYEQLLPLFY-----DSCSNLIDYLNDPIFIFDN 271

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN-CLRPTTIVVSATPG 533
            S   I +    Y   +                 +   L+F  +   L PT++  +A+  
Sbjct: 272 LSKQAILEFEHSYNDFYS-------------VRSEVNKLKFNSFYPTLSPTSLYFTASEI 318

Query: 534 SWELEQCQGIIV 545
           +  LE+   I++
Sbjct: 319 TELLERKNNILL 330



 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  T  ++   E+R++    + V   D +     +
Sbjct: 731 HVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRL-EVRTSVMPFDPVIIRDALLREHFR 789

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G R    V   +  ED+ + L +    + Y   H ++   +  E++ +   GKFD+LV  
Sbjct: 790 GGRSFYVVPRIKDIEDIEKQLKQIVPELSYKIAHGKMAPSKIDEVMSEFYAGKFDILVST 849

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI E   + I  AD  G  +    L Q  GR  R        YA  +  S + 
Sbjct: 850 TIIESGIDIAEANTMIIHKADMLGLSQ----LYQLRGRIGRGKMRG---YAYLMVASHKK 902

Query: 700 AIDETTRRREK 710
               + RR E 
Sbjct: 903 MTSHSLRRLEI 913


>gi|270293887|ref|ZP_06200089.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275354|gb|EFA21214.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1129

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 79/210 (37%), Gaps = 16/210 (7%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G+  S  +   + +++    P + +  +   A   Y +         V +F S +     
Sbjct: 35  GLYASAASLFSSVLVQRATCPLVFILGDMEEAGYFYHDLTQILGTEQVLFFPSSFRRAIK 94

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVESYSQ 292
                    Y +K+++     + +R      L +  +  C+V    +    + S +   +
Sbjct: 95  ---------YGQKDAAN----EILRTEVLSRLQKGEEGLCVVTYPDALAEKVVSRKELGE 141

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             ++L  G+ V+   +   L    ++  D     G + V G  I++F S   +  +R+  
Sbjct: 142 NTLKLHAGERVDMNFVTDVLRSYGFEYVDYVYEPGQYAVRGSIIDVF-SFSSEYPFRIDF 200

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           FG+++E +  F   T       E+I I  +
Sbjct: 201 FGDEVESVRTFEVETQLSKEKKESIVIVPD 230



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+       P+  E+ +   ++  + D +N    +
Sbjct: 714 TLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNEEI--IADAVNFEMSR 771

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++           +L   +       R    H +++  E  +II D     +DVL+  
Sbjct: 772 NGQVFFVNNRISNLVELKAMIERHIPDCRVCIGHGQMEPAELEKIIFDFVNYDYDVLLAT 831

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 832 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLSSLTP 887

Query: 700 AIDETTRRRE 709
              E  RR +
Sbjct: 888 ---EAKRRLQ 894


>gi|10047453|gb|AAG12250.1|AF204056_1 uvrABC excinuclease subunit B [Agrobacterium tumefaciens str. C58]
          Length = 71

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 51/69 (73%), Positives = 62/69 (89%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKI 204
           ++Y P+GDQP AIA L++GI+S E+ Q+LLGVTGSGKTFTMAKVIEA QRPA+++APNK 
Sbjct: 3   SEYQPAGDQPTAIADLVEGINSGERTQVLLGVTGSGKTFTMAKVIEATQRPAVILAPNKT 62

Query: 205 LAAQLYSEF 213
           LAAQLYSEF
Sbjct: 63  LAAQLYSEF 71


>gi|297243627|ref|ZP_06927558.1| transcription-repair coupling factor [Gardnerella vaginalis AMD]
 gi|296888378|gb|EFH27119.1| transcription-repair coupling factor [Gardnerella vaginalis AMD]
          Length = 1202

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 94/243 (38%), Gaps = 17/243 (6%)

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN 220
           L  I     +   +G+    ++  +A + +   +P +V+ P+   A    +  ++++  +
Sbjct: 65  LDSISEDLTISSPIGI----RSAIVAALAKK--KPVVVIVPSSRDAEDFIASVRDWYDGD 118

Query: 221 AVEY-FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
           A +   +  ++    E   PR DT   + +       R+ H    + L     ++V  V 
Sbjct: 119 AQDVAKLEAWETLPHERLSPRADTVASRIAVF----RRLCHPENNTSLFGPIRVLVMPVR 174

Query: 280 CIYGIGSVESYSQMIVQL--KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            +  I  V      I  L  + G  +  +  +  LV+  Y R D+ + RG F V G  I+
Sbjct: 175 SL--IQPVVEGIGDIDPLLFECGKELTLEYAVKRLVENAYTRVDLVMERGEFAVRGGIID 232

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAM 396
           +F +       R+  FG++I+ I +F+    +    N+ +I                 A 
Sbjct: 233 VF-APTMTHPVRIEFFGDEIDTIKQFHASDQRTYGNNIASIWATPCRELQITEKICKRAR 291

Query: 397 KYI 399
             I
Sbjct: 292 SLI 294



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 9/177 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ++      +  +  +G
Sbjct: 809 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYDNSQVAACIKRELLRG 867

Query: 583 LRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++            +   + E   ++RV   H ++   +   +IRD      DVLV   
Sbjct: 868 GQVFYVHNRVEDISSVASKIQELVPDVRVAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTT 927

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    +K +
Sbjct: 928 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGHERAYAYFLYDPSKPM 980


>gi|254882671|ref|ZP_05255381.1| transcription-repair coupling factor [Bacteroides sp. 4_3_47FAA]
 gi|254835464|gb|EET15773.1| transcription-repair coupling factor [Bacteroides sp. 4_3_47FAA]
          Length = 1145

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 95/255 (37%), Gaps = 18/255 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +A LL+   S  +   L G+  S     ++  +   ++  + +  +   A   Y +    
Sbjct: 43  LAALLE--DSSVRTIFLGGLHASAAALFVSSFLRENKQTFVFVLGDLEEAGYFYHDLTQV 100

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                + +F S Y              Y +K+++     + +R      L + +   VV+
Sbjct: 101 NGDEHILFFPSSYRRAVK---------YGQKDAAN----EILRTEVLSRLQKGDPLCVVT 147

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
               +   + S E      ++L +G+ V+ + +   L    ++  D     G + V G  
Sbjct: 148 YPEALAEKVVSQEVLMDKTLKLGVGEHVDTEFITEVLAGYGFEHVDYVYEPGQYAVRGSI 207

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I++F S   +  +R+  FG++++ I  F           ++I I         + +  + 
Sbjct: 208 IDVF-SFASEYPYRIDFFGDEVDSIRTFEVENQLSKEKKQSIAIVPELTNAADK-SGVSF 265

Query: 396 MKYIKEELKMRLIEL 410
            ++I  E  + + + 
Sbjct: 266 FEFIPRETVLAMKDF 280



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+       P+  E+ +     + + + IN    +
Sbjct: 733 TLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNE--DIITEAINFEMSR 790

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++       +   +L   +       R    H +++  +  +II D     +DVL+  
Sbjct: 791 NGQVFFVNNRIQNLVELEAMIKRNIPDCRVCIGHGQMEPEKLEKIIFDFVNYDYDVLLAT 850

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 851 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLTSLTP 906

Query: 700 AIDETTRRRE 709
              E  RR +
Sbjct: 907 ---EAKRRLQ 913


>gi|294778383|ref|ZP_06743806.1| transcription-repair coupling factor [Bacteroides vulgatus PC510]
 gi|294447645|gb|EFG16222.1| transcription-repair coupling factor [Bacteroides vulgatus PC510]
          Length = 1145

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 95/255 (37%), Gaps = 18/255 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +A LL+   S  +   L G+  S     ++  +   ++  + +  +   A   Y +    
Sbjct: 43  LAALLE--DSSVRTIFLGGLHASAAALFVSSFLRENKQTFVFVLGDLEEAGYFYHDLTQV 100

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                + +F S Y              Y +K+++     + +R      L + +   VV+
Sbjct: 101 NGDEHILFFPSSYRRAVK---------YGQKDAAN----EILRTEVLSRLQKGDPLCVVT 147

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
               +   + S E      ++L +G+ V+ + +   L    ++  D     G + V G  
Sbjct: 148 YPEALAEKVVSQEVLMDKTLKLGVGEHVDTEFITEVLAGYGFEHVDYVYEPGQYAVRGSI 207

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I++F S   +  +R+  FG++++ I  F           ++I I         + +  + 
Sbjct: 208 IDVF-SFASEYPYRIDFFGDEVDSIRTFEVENQLSKEKKQSIAIVPELTNAADK-SGVSF 265

Query: 396 MKYIKEELKMRLIEL 410
            ++I  E  + + + 
Sbjct: 266 FEFIPRETVLAMKDF 280



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+       P+  E+ +     + + + IN    +
Sbjct: 733 TLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNE--DIITEAINFEMSR 790

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++       +   +L   +       R    H +++  +  +II D     +DVL+  
Sbjct: 791 NGQVFFVNNRIQNLVELESMIKRNIPDCRVCIGHGQMEPEKLEKIIFDFVNYDYDVLLAT 850

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 851 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLTSLTP 906

Query: 700 AIDETTRRRE 709
              E  RR +
Sbjct: 907 ---EAKRRLQ 913


>gi|150004807|ref|YP_001299551.1| transcription-repair coupling factor [Bacteroides vulgatus ATCC
           8482]
 gi|319641987|ref|ZP_07996654.1| transcription-repair coupling factor [Bacteroides sp. 3_1_40A]
 gi|149933231|gb|ABR39929.1| transcription-repair coupling factor [Bacteroides vulgatus ATCC
           8482]
 gi|317386412|gb|EFV67324.1| transcription-repair coupling factor [Bacteroides sp. 3_1_40A]
          Length = 1121

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 96/255 (37%), Gaps = 18/255 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +A LL+   S  +   L G+  S     ++  +   ++  + +  +   A   Y +    
Sbjct: 19  LAALLE--DSSVRTIFLGGLHASAAALFVSSFLRENKQTFVFVLGDLEEAGYFYHDLTQV 76

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                + +F S Y          R   Y +K+++     + +R      L + +   VV+
Sbjct: 77  NGDEHILFFPSSYR---------RAVKYGQKDAAN----EILRTEVLSRLQKGDPLCVVT 123

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
               +   + S E      ++L +G+ V+ + +   L    ++  D     G + V G  
Sbjct: 124 YPEALAEKVVSQEVLMDKTLKLGVGEHVDTEFITEVLAGYGFEHVDYVYEPGQYAVRGSI 183

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I++F S   +  +R+  FG++++ I  F           ++I I         + +  + 
Sbjct: 184 IDVF-SFASEYPYRIDFFGDEVDSIRTFEVENQLSKEKKQSIAIVPELTNAADK-SGVSF 241

Query: 396 MKYIKEELKMRLIEL 410
            ++I  E  + + + 
Sbjct: 242 FEFIPRETVLAMKDF 256



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+       P+  E+ +     + + + IN    +
Sbjct: 709 TLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNE--DIITEAINFEMSR 766

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++       +   +L   +       R    H +++  +  +II D     +DVL+  
Sbjct: 767 NGQVFFVNNRIQNLVELEAMIKRNIPDCRVCIGHGQMEPEKLEKIIFDFVNYDYDVLLAT 826

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 827 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLTSLTP 882

Query: 700 AIDETTRRRE 709
              E  RR +
Sbjct: 883 ---EAKRRLQ 889


>gi|126736472|ref|ZP_01752213.1| transcription-repair coupling factor [Roseobacter sp. CCS2]
 gi|126714010|gb|EBA10880.1| transcription-repair coupling factor [Roseobacter sp. CCS2]
          Length = 1148

 Score =  110 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 84/526 (15%), Positives = 173/526 (32%), Gaps = 74/526 (14%)

Query: 169 KVQLLLGVT-GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           K   + G   G      +A++ +    P + +A +    A + S    F P   +  F  
Sbjct: 5   KHITVSGAPEGYDAQLILAELGKGT--PVLHVARDDKRLAAMQSALAFFAPQTPIFVF-- 60

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER---NDCIVVSSVSCIYGI 284
                      P  D       S N  I   R +   +L+        I+ +  +    +
Sbjct: 61  -----------PAWDCLPYDRVSPNTDISAARMATLAALVHGMPEQFIILTTLSAATQRV 109

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
            +     +   Q  +G  ++++ L   LV+  + +    +  G + + G  I+I+P   +
Sbjct: 110 PARSLLREAAFQATVGKRMDEEALRQFLVRMGFTQSPTVMEAGDYAIRGGIIDIYPP-GQ 168

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELK 404
               R+ +FG+ ++    F P T +    +  +++   S  +     +    +  + E  
Sbjct: 169 SGPVRLDLFGDVLDGARRFDPATQRTTEKLAEVELAPVSEVILDEAAITRFRQNYRLE-- 226

Query: 405 MRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEY 464
                    G                E +        +E++  +       +   TLF+Y
Sbjct: 227 -----FGAAGTD----------DPLYEAVSAGRKHAGVEHWLGFF-----QDDLETLFDY 266

Query: 465 IPEDSLLFVDE-SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP-----LRFEEW 518
           +P+ ++   D+ + + + +   +      R   L++ G R+ S     P     L    W
Sbjct: 267 LPKATVTLDDQMTPMRVARWDSIANQYGTRMHALSQKG-RMDSVYKPAPPELLYLDDAAW 325

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
                   V+  +P    L+Q  G  V       G    P   +   +    + D +   
Sbjct: 326 EAAVADRRVMQFSP----LKQATGPGVIDAGGRIGRNFSPERQQEQISLFSALADHVKTK 381

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL-RLGKFDVLV 637
              G  +++   ++   E L   + +  +                 + D  R+GK  V +
Sbjct: 382 LNDGP-VVIASYSEGARERLEGLIEDEGV------------VEAISVTDFSRIGKRGVHL 428

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +  L  G + P  GL  I + D  G       LI+   R  R  N
Sbjct: 429 AVWALDHGFEAP--GLTVISEQDVLG-----DRLIRQTKRKRRAEN 467



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 105/290 (36%), Gaps = 49/290 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + ++ATP    L+     + +  I  T  +D    IR+  ++ + +   + +     +
Sbjct: 745 HVLTLTATPIPRTLQLSLSGVRDLSIIGTPPIDRLA-IRTYVSEFDTITVREALLREHYR 803

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMH--SEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +  + V       ++ ++L      V Y+    ++   E  + +     GK+DVL+  
Sbjct: 804 GGQSFVVVPRISDMAEMEDFLKREVPEVTYISATGQMAAGELDDRMNAFYDGKYDVLLAT 863

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  +D  G  +    L Q  GR  R   SK   YA   TK  Q 
Sbjct: 864 TIVESGLDIPTANTMIVWRSDMFGLSQ----LYQIRGRVGR---SKTRAYAYLTTKPRQK 916

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE-DAATTNISIDAQQLSLSKK 758
             D   +R                    +++  ID +      A+ ++ I      L ++
Sbjct: 917 LTDTAQKRL-------------------RVLGSIDTLGAGFTLASQDLDIRGAGNLLGEE 957

Query: 759 KGKAHLK---SLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
           +     +    L +QM                D+I  ++S      +DD 
Sbjct: 958 QSGQMREVGYELYQQMLE--------------DQIAAIRSGQAEGIIDDG 993


>gi|198275717|ref|ZP_03208248.1| hypothetical protein BACPLE_01892 [Bacteroides plebeius DSM 17135]
 gi|198271346|gb|EDY95616.1| hypothetical protein BACPLE_01892 [Bacteroides plebeius DSM 17135]
          Length = 1122

 Score =  110 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 88/225 (39%), Gaps = 17/225 (7%)

Query: 161 LKGIHSREKVQLLL--GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           L  +   + ++ +   G+ GS  +   +  ++ M    + +  +   A   Y +      
Sbjct: 19  LASLRKNKDIKTVYLEGMHGSCASLFASASVKTMPGIHVFILNDLEEAGYFYHDLVQVDG 78

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
              + +F S Y              Y +K+++     + +R      L ++    VV+  
Sbjct: 79  EADILFFPSSYRRAIK---------YGQKDAAN----EILRTEVLSRLEQKKPVTVVTYP 125

Query: 279 SCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             +   + S +  S  ++ LK+G   +  +L+ +L K  ++  D     G F + G  ++
Sbjct: 126 EALAEKVVSRKRLSDAMLTLKVGQQEDTVKLMETLSKYGFEHVDYVYEPGQFALRGSILD 185

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           ++ S   +  +R+  FG++I+ +  F   T       ++I I   
Sbjct: 186 VY-SFASEYPYRIDFFGDEIDSLRTFEVETQLSKEKKDSICIVPE 229



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 69/196 (35%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+       P+  E+ +   ++  + + IN    +
Sbjct: 708 TLTLTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNEEI--ISEAINFEMSR 765

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++       +   +L   +       R    H +++  E  +II D     +DVL+  
Sbjct: 766 NGQVFFVNNRIQNLVELKAMILRNIPDCRVCIGHGQMQPEELEKIIFDFVNYDYDVLLAT 825

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R               S+  
Sbjct: 826 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRGNKKAFCYLLAPPLSSL-- 879

Query: 700 AIDETTRRREKQLEHN 715
                  RR  Q   N
Sbjct: 880 ---TPEARRRLQAIEN 892


>gi|218679341|ref|ZP_03527238.1| excinuclease ABC subunit B [Rhizobium etli CIAT 894]
          Length = 201

 Score =  110 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 54/154 (35%), Gaps = 50/154 (32%)

Query: 33  KQLEVDKTMVA-DAMRRIRSEAGKHRKNAAKRMLIHQR---------------------- 69
           KQLE D      ++ R I S+AGKHRK        H                        
Sbjct: 36  KQLEADAEAAGVESQREIASKAGKHRKKVENEARKHAEAVAARSAEGRKPERASEPMRGP 95

Query: 70  ---------------------------ENTASKGEFQSQSSISMSEKQTREISEQTMTPS 102
                                        T +       + + +S +    IS   +T +
Sbjct: 96  RGAKAQSAGSVSASKTARGVSIGGSSDPKTRAAAGLNPVAGLDISLEDAGSISPGGVTAT 155

Query: 103 VQALARLIQSDNPLLKNGKIWTPHRSWSINNHSK 136
           V+AL+ LI+S NPL KNGKIWTPHR    +   +
Sbjct: 156 VEALSALIESGNPLHKNGKIWTPHRPARPDKSRR 189


>gi|294808313|ref|ZP_06767070.1| transcription-repair coupling factor [Bacteroides xylanisolvens SD
           CC 1b]
 gi|294444475|gb|EFG13185.1| transcription-repair coupling factor [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 1161

 Score =  110 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 93/248 (37%), Gaps = 20/248 (8%)

Query: 159 QLLKGIHSREKVQLLL--GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            ++K +     VQ +   G+  S  +   + +++    P + +  +   A   Y +    
Sbjct: 54  AVMKRLLKDTSVQTVFCGGLCASAASLFSSVLVQESGCPFVFILGDLEEAGYFYHDLTQI 113

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIV 274
                V +F S +          R+  Y +K+++     + +R      L +R +  CIV
Sbjct: 114 LGTEKVLFFPSSFR---------RSIKYGQKDAAN----EILRTEVLSRLQKREEGLCIV 160

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
               +    + S +  S   ++L +G+ V+   +   L    ++  D     G + V G 
Sbjct: 161 TYPDALAEKVVSRKELSDKTLKLNVGEKVDTTFITDVLHSYGFEYVDYVYEPGQYAVRGS 220

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I++F S   +  +R+  FG+++E I  F   +         + I              +
Sbjct: 221 IIDVF-SFASEYPYRIDFFGDEVESIRTFEVESQLSREKKSGVSIVP--DLAVTGDVTTS 277

Query: 395 AMKYIKEE 402
            + +I ++
Sbjct: 278 FLDFIPKD 285



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 15/195 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +   +V  + D IN    +
Sbjct: 746 TLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFNEEV--ITDAINFEMSR 803

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++           +L   +     + RV   H +++  E  +II D     +DVL+  
Sbjct: 804 NGQVFFVNNRIANLPELKAMIERHIPDCRVAIGHGQMEPTELEKIILDFVNYDYDVLLAT 863

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 864 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLGSLTA 919

Query: 700 AIDETTRRREKQLEH 714
                 RRR + +E+
Sbjct: 920 E----GRRRLQAIEN 930


>gi|157828769|ref|YP_001495011.1| transcription-repair coupling factor [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|157801250|gb|ABV76503.1| transcription-repair coupling factor [Rickettsia rickettsii str.
           'Sheila Smith']
          Length = 1122

 Score =  110 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 66/373 (17%), Positives = 123/373 (32%), Gaps = 56/373 (15%)

Query: 179 SGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           + K+F  +    + +++  I+ A N+  A QLY +   F  +  + YF            
Sbjct: 9   AAKSFFAIDNFTKNLKQDFILSASNEEEALQLYKQALFFSSNENIYYF------------ 56

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERN----DCIVVSSVSCIYGIGSVESYSQM 293
            P  +T     +S N  I   R      L   N      ++  + + +  +   + +S+ 
Sbjct: 57  -PSYNTIPYDHTSPNANILSRRAETLIKLTTNNSNSNKLLITHTANLLNKLPPKDFFSKY 115

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            ++L         EL   LV+  + R    I  G F V G+ I+I        A+R+   
Sbjct: 116 FLKLSPKMKFTTDELAMFLVENCFTRNASSIDAGEFAVRGEIIDII--LSGPKAYRIHFS 173

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
              IE I EF   T    ++   + I   +  V    T+                 L   
Sbjct: 174 WGYIESIKEFDIDTQISTKSCRELIISPANEIVLNSETIGNFKNN----------YLRNF 223

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
           G       L        E + +       E            +    L +Y+ +   +F 
Sbjct: 224 GVNHTDNAL-------YEAVISGRKFTGYEQLLPLFY-----DSCSNLIDYLNDPIFIFD 271

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN-CLRPTTIVVSATP 532
           + S   I +    Y   +              +  +   L+F  +   L PT++  +A+ 
Sbjct: 272 NLSKQAILEFEHSYNDFYS-------------ARSEANKLKFNSFYPTLSPTSLYFTASE 318

Query: 533 GSWELEQCQGIIV 545
            +  LEQ   I++
Sbjct: 319 ITELLEQNNNILL 331



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 9/178 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  T  ++   E+ ++    + V   D +     +
Sbjct: 732 HVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRL-EVHTSVMPFDPVIIRDALLREHFR 790

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G R    V   +  ED+ + L +    + Y   + ++   +  E++ +   GKFD+LV  
Sbjct: 791 GGRSFYVVPRIKDIEDIAKQLKQIVPELSYKIAYGKMTPSKIDEVMSEFYAGKFDILVST 850

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DI E   + I +AD  G  +    L Q  GR  R      +       K +
Sbjct: 851 TIIESGIDIAEANTMIIHNADMLGLSQ----LYQLRGRIGRGKMRGYVYLTVASHKKM 904


>gi|332297986|ref|YP_004439908.1| transcription-repair coupling factor [Treponema brennaborense DSM
           12168]
 gi|332181089|gb|AEE16777.1| transcription-repair coupling factor [Treponema brennaborense DSM
           12168]
          Length = 1185

 Score =  110 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 85/504 (16%), Positives = 171/504 (33%), Gaps = 55/504 (10%)

Query: 173 LLGVTGSGKTFTMAK-VIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           L GV GS   F +A+          +++ PN+  A     +     P  +VE    +   
Sbjct: 37  LEGVQGSLYAFLIAEYAAANPGATIVIIVPNEKDAQDFELDLSAAAPGVSVEKLSWWGMV 96

Query: 232 YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL--------ERNDCIVVSSVSCIYG 283
             P   VPR  +   + +++  ++   R  A ++ +              +V+  +    
Sbjct: 97  --PYRTVPRGSSVFGERAALLAKLAARREKAIQTAVPPSGTSNSADTAIFIVTQRALQTP 154

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           +   +    ++ +++ GDS +   +   L  Q Y R     +RG F + G+ ++IF    
Sbjct: 155 VPPPDYVESLLFRIRKGDSFDPAAIAERLSAQGYTRVPRVTVRGEFTLRGEVLDIFMP-G 213

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP---TLNTAMKYIK 400
           +  A R+    + +E+I  F P     +  +  + IY     V        L T ++   
Sbjct: 214 QQCAHRIVFDFDTVEQIKTFDPEMQNSLETLGELLIYPMKEVVWTDEFAHKLETVLRTSN 273

Query: 401 EELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT 460
           E   ++   L ++G+  E            E+L    S +  E +   L  R       +
Sbjct: 274 EYAPVKTNVLTEDGKNPEDVYSAAADKLIGELLIQRES-EGEELFYSLLFDRA-----HS 327

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y+   + +F  +      ++             L      +      + L F+    
Sbjct: 328 ILDYLDARATVFFFDYD----RLDNAQESFEREYTGLYRKARVVQPVPPPQQLLFKFGEL 383

Query: 521 L-RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           +      V+  T  +  +EQ       +  R     DPP   RS    +  + + I    
Sbjct: 384 VPVHEKRVLFRTLHTNVVEQATQEKTGK-RRLFFEADPP---RSFFGNINYLKESIASLV 439

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             G  I +                       Y  SE ++L   E+++D       V+V  
Sbjct: 440 ADGWTIYI-----------------------YADSENQSLRVKELLKDF--ADKPVVVVP 474

Query: 640 NLLREGLDIPECGLVAILDADKEG 663
             L  G  IP   ++ + + +  G
Sbjct: 475 EALSAGFGIPALKVLVVQENEIFG 498



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 70/187 (37%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDVYDEINLAAQQGL 583
           ++ +SATP    L      I +  +  T   +  P+E        + V   I   A++G 
Sbjct: 795 SLAMSATPIPRTLHMSLLKIRDMSLLTTPPQNRQPIETVIDSYNDDRVATAIRREAERGG 854

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E+    L +    + V   H ++   E  +I R  ++G F VLV   +
Sbjct: 855 QVFYLHNRVETLEETRIKLEQLVPEMLVDTAHGQMSAGELDDIFRRFKMGGFHVLVATTI 914

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I  AD  G     + L Q  GR  R+             K    A+
Sbjct: 915 IENGIDIPNVNTIIIDRADMYG----VSQLYQLRGRVGRSDRKAYAYLLYPENK----AL 966

Query: 702 DETTRRR 708
            E   +R
Sbjct: 967 SEIAMKR 973


>gi|258544391|ref|ZP_05704625.1| ATP-dependent RNA helicase RhlE [Cardiobacterium hominis ATCC
           15826]
 gi|258520350|gb|EEV89209.1| ATP-dependent RNA helicase RhlE [Cardiobacterium hominis ATCC
           15826]
          Length = 296

 Score =  110 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 89/214 (41%), Gaps = 22/214 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---------EDVYDE 574
            TI+ SAT      +   G I  +  R    +   VE      +V           + + 
Sbjct: 43  QTIMSSAT-----WDGAVGKIARRYTREPERIAIKVESAHIEEKVYFCDNAEHKNQILEH 97

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +    + G   ++   TKR +E++ + L +   R RY+H ++  ++R  I+ DLR GK D
Sbjct: 98  LVADPEMGQ-AIIFAATKRASEEIADSLRDNGFRARYLHGDLPQVKRNRIVEDLRKGKCD 156

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   G+D+P    V   D       R     +  IGR+ R   +   +   ++ 
Sbjct: 157 ILVATDVAARGIDVPAISHVINYD-----LPRQVEDYVHRIGRSGRAGRTGTAINLCSLA 211

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
              Q  +   TR  E+++E ++   + P+   + 
Sbjct: 212 DRSQ--LSAITRYLERKIEEHRIAGLEPKITSKP 243


>gi|157803549|ref|YP_001492098.1| hypothetical protein A1E_01840 [Rickettsia canadensis str. McKiel]
 gi|157784812|gb|ABV73313.1| hypothetical protein A1E_01840 [Rickettsia canadensis str. McKiel]
          Length = 1119

 Score =  110 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 74/484 (15%), Positives = 158/484 (32%), Gaps = 66/484 (13%)

Query: 179 SGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           + K+F  +  + + +++  I+   N+    QLY +   F  + ++ YF            
Sbjct: 9   AAKSFFAIDNLTKNLKQDLILSVSNEEDVLQLYKQALFFSSNESIYYF------------ 56

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERN---DCIVVSSVSCIYGIGSVESYSQMI 294
            P  DT     +S +  I   R      L   N     ++  + + +  +   + +S+  
Sbjct: 57  -PSYDTVPYDHASPSPSIVSKRAETLTKLTTNNSNSKLLITHAANLLNKLPPKDFFSKYF 115

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
           ++L         EL   LV+  + R    +  G F V G+ I+I        A+R++   
Sbjct: 116 LKLFPKMKFTTDELAMFLVENSFTRNTSSVDVGEFVVRGEIIDIILPG--PKAYRINFSW 173

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           + IE I EF   T    ++   + I   +  V    T+                 L   G
Sbjct: 174 DYIESIKEFDIDTQISTKSCTELVITPVNEIVLNSETIGNFKNN----------YLRNFG 223

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                  L + +T       +       E                 L +Y+ +  ++F +
Sbjct: 224 VNYTDNPLYEAVT-------SGRKFSGYEQLLPLFYNSC-----SNLVDYLNDPIIIFDN 271

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
            S   I +    Y   +  ++   ++    P+    R L F     +    ++       
Sbjct: 272 LSKQAILEFERSYNDFYSARSEANKFNRFYPTLAPTR-LYFTISEIM---ELLEQKNNIL 327

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
              +  +   + + IR T  ++  +        V D   EI   A    +I++ V +   
Sbjct: 328 ISYDNSEQATLIENIRSTSFIEKKI--------VFDKLFEII-KAHSSKKIVIGVASLSG 378

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            E +   +               T   I  + + ++G  ++ +    L +  D  E   +
Sbjct: 379 LERVKSIIQNYEY----------TYNEINKLDEAKIGIINIAILP--LNQSFDTKEYLFI 426

Query: 655 AILD 658
            + +
Sbjct: 427 TVSE 430



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  T  ++   E+R++      V   D +     +
Sbjct: 729 HVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRL-EVRTSVMPFNPVIIRDALLREHFR 787

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G R    V       D+ + L +    + Y  +H ++   +  E++ +   GKFD+LV  
Sbjct: 788 GGRSFYVVPRINDILDIEKQLKQIVPELSYKIVHRKMPYNKIDEVMSEFYAGKFDILVST 847

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I  AD  G  +    L Q  GR  R        YA  I +S + 
Sbjct: 848 TIIESGIDIQGANTMIIHKADMLGLSQ----LYQLRGRIGRGKMRG---YAYLIVESHKK 900

Query: 700 AIDETTRRREK 710
               + RR E 
Sbjct: 901 MTAHSLRRLEI 911



 Score = 40.8 bits (94), Expect = 0.93,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 48/131 (36%), Gaps = 8/131 (6%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKT----- 182
            SI    ++   F     +  + DQ  AI  + + + S     +L+ G  G GKT     
Sbjct: 556 ASIEFDLEEYDKFCAHFPFSETEDQLTAINDIREDLRSGMLMDRLICGDVGFGKTEVAMR 615

Query: 183 --FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
             F +AK +        V+ P  IL +Q  S F   F    +            EA + R
Sbjct: 616 AVFMVAKSLNEYSPQVAVVVPTTILCSQHVSRFTERFKGFGLNIKQLSSIISPKEAKIIR 675

Query: 241 TDTYIEKESSI 251
           ++    K + I
Sbjct: 676 SELESGKINII 686


>gi|160888992|ref|ZP_02069995.1| hypothetical protein BACUNI_01412 [Bacteroides uniformis ATCC 8492]
 gi|156861459|gb|EDO54890.1| hypothetical protein BACUNI_01412 [Bacteroides uniformis ATCC 8492]
          Length = 1129

 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 80/210 (38%), Gaps = 16/210 (7%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G+  S  +   + +++    P + +  +   A   Y +         V +F S +     
Sbjct: 35  GLYASAASLFSSVLVQRATCPLVFILGDMEEAGYFYHDLTQILGTEQVLFFPSSFRRAIK 94

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVESYSQ 292
                    Y +K+++     + +R      L +  +  C+V  S +    + S +   +
Sbjct: 95  ---------YGQKDAAN----EILRTEVLSRLQKGEEGLCVVTYSDALAEKVVSRKELGE 141

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             ++L  G+ V+   +   L    ++  D     G + V G  I++F S   +  +R+  
Sbjct: 142 NTLKLHAGERVDMNFVTDVLRSYGFEYVDYVYEPGQYAVRGSIIDVF-SFSSEYPFRIDF 200

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           FG+++E +  F   T       E+I I  +
Sbjct: 201 FGDEVESVRTFEVETQLSKEKKESIVIVPD 230



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+       P+  E+ +   ++  + D +N    +
Sbjct: 714 TLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNEEI--IADAVNFEMSR 771

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++           +L   +       R    H +++  E  +II D     +DVL+  
Sbjct: 772 NGQVFFVNNRISNLVELKAMIERHIPDCRVCIGHGQMEPAELEKIIFDFVNYDYDVLLAT 831

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 832 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLSSLTP 887

Query: 700 AIDETTRRRE 709
              E  RR +
Sbjct: 888 ---EAKRRLQ 894


>gi|320532424|ref|ZP_08033259.1| conserved domain protein [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320135361|gb|EFW27474.1| conserved domain protein [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 294

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 79/202 (39%), Gaps = 12/202 (5%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P +V+      A +     +++ P   V    ++ +    E   PR DT  ++ S     
Sbjct: 5   PLLVVTATGREAEETALALRSYLPAEDVAVMPAW-ETLPHERLSPRADTVAQRLSV---- 59

Query: 255 IDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           + R+ H      +      V + ++  I G+G +E       QL  G +V  +E    L 
Sbjct: 60  LRRLAHPEEGGAIRVLIVPVRALLAPVIAGLGELEPV-----QLAPGLAVGLEETARRLE 114

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
              Y R D+   RG + V G  +++FP   E    RV  FG++I+E+S F     + I  
Sbjct: 115 AAAYTRVDMVESRGEYAVRGGILDVFPP-SEPRPVRVDFFGDEIDEVSSFAVADQRTIET 173

Query: 374 VETIKIYANSHYVTPRPTLNTA 395
           +  +   A    V        A
Sbjct: 174 LGAVTATACRELVLTDAVRERA 195


>gi|319902708|ref|YP_004162436.1| transcription-repair coupling factor [Bacteroides helcogenes P
           36-108]
 gi|319417739|gb|ADV44850.1| transcription-repair coupling factor [Bacteroides helcogenes P
           36-108]
          Length = 1129

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 85/229 (37%), Gaps = 21/229 (9%)

Query: 161 LKGIHSREKVQLLL-----GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           ++GI    K   +      G+  S  +   + +++  + P + +  +   A   Y +   
Sbjct: 16  VEGISRVLKDTSIHHLYCGGLCASAASLFSSVLVQRGEYPFVFILGDLEEAGYFYHDLTQ 75

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CI 273
                 V +F S +              Y +K+++     + +R      L +  +  C+
Sbjct: 76  ILGVEKVLFFPSSFRRAIK---------YGQKDAAN----EILRTEVLSRLQKGEEGLCV 122

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V    +    + S +      ++L  G+ V+   +   L    ++  D     G + V G
Sbjct: 123 VTYPDALAEKVVSRKELGDKTLKLHAGEKVDMTFITEVLRSYGFEYVDYVYEPGQYAVRG 182

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             I++F S   +  +R+  FG++++ I  F   T       +++ I  +
Sbjct: 183 SIIDVF-SFSSEFPFRIDFFGDEVDSIRTFEVETQLSKEKKDSVVIVPD 230



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +   +V  + D IN    +
Sbjct: 714 TLTMTATPIPRTLQFSLLGARDLSVISTPPPNRYPIQTEVHTFNEEV--IADAINFEMSR 771

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++           +L   +  R    R    H +++  E  +II D     +DVL+  
Sbjct: 772 NGQVFFVNNRISNLYELKAMIERRIPDCRVCIGHGQMEPAELEKIILDFVNYDYDVLLAT 831

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 832 TIIESGIDIPNANTIIINAAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLSSLTP 887

Query: 700 AIDETTRRRE 709
              E  RR +
Sbjct: 888 ---EAKRRLQ 894


>gi|317506800|ref|ZP_07964575.1| transcription-repair coupling factor [Segniliparus rugosus ATCC
           BAA-974]
 gi|316254911|gb|EFV14206.1| transcription-repair coupling factor [Segniliparus rugosus ATCC
           BAA-974]
          Length = 1155

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 93/468 (19%), Positives = 159/468 (33%), Gaps = 61/468 (13%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +V+ P +  A  L  E  +    + V              +VP  +T   +  S + + 
Sbjct: 69  TLVVTPGEREAGTLSQELTDLLGKHRVV-------------FVPAWETLPHERLSPSLRA 115

Query: 256 DRMRHSATRSLLERNDC-----IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
              R    R  L R D       V+S  S I  +           +L++GD  +   L  
Sbjct: 116 VGERLWGLRRFLGREDGQAPDIAVMSVRSFIQPL-DPAVLDVAPARLRVGDEQDLTLLAE 174

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            L    Y R D+   RG F V G  +++F S L+D   RV  +G++I E+  F  +  + 
Sbjct: 175 RLTALGYTRVDLVAERGDFAVRGGILDVF-SPLDDHPVRVQFWGDEITELRSFSVIDQRS 233

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           +           +   +P       +     EL +     E+ G L     L   I   L
Sbjct: 234 LG---------AASESSPESERAELIAPPVRELLLTAPVRERAGELAARGGLPAPIAEAL 284

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
             L         E     L      +   ++   +   + L + +    I + + + R D
Sbjct: 285 AKLAEGVVAPGAEALRDVL----AADALSSVVALLGPGTQLLLGDIERVIARAADLIRTD 340

Query: 491 FH-RKATL-AEYGFRLP-----SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
              R A         +P     S   +     E+          VSA P S ++E   G+
Sbjct: 341 EEFRAAAWQVASEDSVPIDGDGSAYRDVASLREDARAAGCAVWEVSALPSSRQIEL--GL 398

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL--TEY 601
            V +I RP G       + + R Q+    + + +   QG   +     +R+ E L   + 
Sbjct: 399 TVPEIARP-GEPALESVVAALRAQLN--GNGVAVVVAQGQGTV-----QRVVEQLRAADL 450

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRL-----GKF----DVLVGIN 640
                      H+ V T+ R  + + +RL     G+     DVLV   
Sbjct: 451 PVRAGASGETPHTGVVTVLRGALAQGVRLAPPAGGRGTAPPDVLVLTE 498



 Score = 41.2 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 62/196 (31%), Gaps = 19/196 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I +     + ++ PP E     T V     + V   +    
Sbjct: 806 VLTLSATPIPRTLEMSLTGIRDM----STILTPPEERFPVLTYVGAHDEKQVAAALRREL 861

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++          E     L E     R    H ++              G+ D+LV
Sbjct: 862 VRDGQVFYIHNRVSSIEKTAARLKELVPEARVAVAHGQMGEEALEATAEAFWRGEHDILV 921

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + +  AD  G  +    L Q  GR  R        +     +S 
Sbjct: 922 CTTIVESGLDIANANTLIVERADTLGLSQ----LHQLRGRVGRGGERAFAYFLYDPERS- 976

Query: 698 QLAIDETTRRREKQLE 713
              + ET   R   + 
Sbjct: 977 ---LSETAHERLATIA 989


>gi|283783133|ref|YP_003373887.1| transcription-repair coupling factor [Gardnerella vaginalis 409-05]
 gi|283441749|gb|ADB14215.1| transcription-repair coupling factor [Gardnerella vaginalis 409-05]
          Length = 1202

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 88/223 (39%), Gaps = 13/223 (5%)

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY-FVSYYDYYQPEAYVP 239
           ++  +A + +   +P +V+ P+   A    +  ++++  +A +   +  ++    E   P
Sbjct: 81  RSAIVAALAKK--KPVVVIVPSSRDAEDFIASVRDWYDGDAQDVAKLEAWETLPHERLSP 138

Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL-- 297
           R DT   + +       R+ H    + L     ++V  V  +  I  V      I  L  
Sbjct: 139 RADTVASRIAVF----RRLCHPENNTSLFGPIRVLVMPVRSL--IQPVVEGIGDIDPLLF 192

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
           + G  +  +  +  LV+  Y R D+ + RG F V G  I++F +       R+  FG++I
Sbjct: 193 ECGKELTLEYAVKRLVENAYNRVDLVMERGEFAVRGGIIDVF-APTMTHPVRIEFFGDEI 251

Query: 358 EEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYI 399
           + I +F+    +    N+ +I                 A   I
Sbjct: 252 DTIKQFHASDQRTYGNNIASIWATPCRELQITEKICKRARSLI 294



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 9/177 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
            + +SATP    LE     I E     T   D    + +     ++      +  +  +G
Sbjct: 809 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYDNSQVAACIKRELLRG 867

Query: 583 LRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++            +   + E   ++RV   H ++   +   +IRD      DVLV   
Sbjct: 868 GQVFYVHNRVEDISSVASKIQELVPDVRVAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTT 927

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    +K +
Sbjct: 928 IIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGHERAYAYFLYDPSKPM 980


>gi|237715944|ref|ZP_04546425.1| transcription-repair coupling factor [Bacteroides sp. D1]
 gi|229443591|gb|EEO49382.1| transcription-repair coupling factor [Bacteroides sp. D1]
          Length = 1131

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 93/248 (37%), Gaps = 20/248 (8%)

Query: 159 QLLKGIHSREKVQLLL--GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            ++K +     VQ +   G+  S  +   + +++    P + +  +   A   Y +    
Sbjct: 24  AVMKRLLKDTSVQTVFCGGLCASAASLFSSVLVQESGCPFVFILGDLEEAGYFYHDLTQI 83

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIV 274
                V +F S +          R+  Y +K+++     + +R      L +R +  CIV
Sbjct: 84  LGTEKVLFFPSSFR---------RSIKYGQKDAAN----EILRTEVLSRLQKREEGLCIV 130

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
               +    + S +  S   ++L +G+ V+   +   L    ++  D     G + V G 
Sbjct: 131 TYPDALAEKVVSRKELSDKTLKLNVGEKVDTTFITDVLHSYGFEYVDYVYEPGQYAVRGS 190

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I++F S   +  +R+  FG+++E I  F   +         + I              +
Sbjct: 191 IIDVF-SFASEYPYRIDFFGDEVESIRTFEVESQLSREKKSGVSIVP--DLAVTGDVTTS 247

Query: 395 AMKYIKEE 402
            + +I ++
Sbjct: 248 FLDFIPKD 255



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 15/195 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +   +V  + D IN    +
Sbjct: 716 TLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFNEEV--ITDAINFEMSR 773

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++           +L   +     + RV   H +++  E  +II D     +DVL+  
Sbjct: 774 NGQVFFVNNRIANLPELKAMIERHIPDCRVAIGHGQMEPTELEKIILDFVNYDYDVLLAT 833

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 834 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLGSLTA 889

Query: 700 AIDETTRRREKQLEH 714
                 RRR + +E+
Sbjct: 890 E----GRRRLQAIEN 900


>gi|294643129|ref|ZP_06720961.1| transcription-repair coupling factor [Bacteroides ovatus SD CC 2a]
 gi|292641537|gb|EFF59723.1| transcription-repair coupling factor [Bacteroides ovatus SD CC 2a]
          Length = 1119

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 93/248 (37%), Gaps = 20/248 (8%)

Query: 159 QLLKGIHSREKVQLLL--GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            ++K +     VQ +   G+  S  +   + +++    P + +  +   A   Y +    
Sbjct: 12  AVMKRLLKDTSVQTVFCGGLCASAASLFSSVLVQESGCPFVFILGDLEEAGYFYHDLTQI 71

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIV 274
                V +F S +          R+  Y +K+++     + +R      L +R +  CIV
Sbjct: 72  LGTEKVLFFPSSFR---------RSIKYGQKDAAN----EILRTEVLSRLQKREEGLCIV 118

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
               +    + S +  S   ++L +G+ V+   +   L    ++  D     G + V G 
Sbjct: 119 TYPDALAEKVVSRKELSDKTLKLNVGEKVDTTFITDVLHSYGFEYVDYVYEPGQYAVRGS 178

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I++F S   +  +R+  FG+++E I  F   +         + I              +
Sbjct: 179 IIDVF-SFASEYPYRIDFFGDEVESIRTFEVESQLSREKKSGVSIVP--DLAVTGDVTTS 235

Query: 395 AMKYIKEE 402
            + +I ++
Sbjct: 236 FLDFIPKD 243



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 15/195 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +   +V  + D IN    +
Sbjct: 704 TLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFNEEV--ITDAINFEMSR 761

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++           +L   +     + RV   H +++  E  +II D     +DVL+  
Sbjct: 762 NGQVFFVNNRIANLPELKAMIERHIPDCRVAIGHGQMEPTELEKIILDFVNYDYDVLLAT 821

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 822 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLGSLTA 877

Query: 700 AIDETTRRREKQLEH 714
                 RRR + +E+
Sbjct: 878 E----GRRRLQAIEN 888


>gi|329960904|ref|ZP_08299183.1| transcription-repair coupling factor [Bacteroides fluxus YIT 12057]
 gi|328532190|gb|EGF58994.1| transcription-repair coupling factor [Bacteroides fluxus YIT 12057]
          Length = 1164

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 77/210 (36%), Gaps = 16/210 (7%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G+  S  +   + ++   + P + +  +   A   Y +         V +F S +     
Sbjct: 70  GLCASAASLFSSVLVRRGECPFVFILGDLEEAGYFYHDLTQVLGTEQVLFFPSSFRRAIK 129

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVESYSQ 292
                    Y +K+++     + +R      L +  +  CIV    +    + S +    
Sbjct: 130 ---------YGQKDAAN----EILRTEVLSRLQKGEEGLCIVTYPDALAEKVVSRKELGD 176

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             ++L  G+ V+   +   L    ++  D     G + V G  I++F S   +  +R+  
Sbjct: 177 KTLKLHAGEKVDMNFITEVLRSYGFEYVDYVYEPGQYAVRGSIIDVF-SFSSEFPFRIDF 235

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           FG+++E I  F   T       E I I  +
Sbjct: 236 FGDEVESIRTFEVETQLSKEKKENIVIVPD 265



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+       P+  E+ +   +V  + D +N    +
Sbjct: 749 TLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNEEV--IADAVNFEMSR 806

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++           +L   +  R    R    H +++  E  +II D     +DVL+  
Sbjct: 807 NGQVFFVNNRISNLAELKAMIERRIPDCRVCIGHGQMEPAELEKIILDFVNYDYDVLLAT 866

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 867 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLSSLTP 922

Query: 700 AIDETTRRRE 709
              E  RR +
Sbjct: 923 ---EAKRRLQ 929


>gi|300858127|ref|YP_003783110.1| transcription-repair-coupling factor [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685581|gb|ADK28503.1| transcription-repair-coupling factor [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 1265

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 103/649 (15%), Positives = 202/649 (31%), Gaps = 103/649 (15%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  LL+  H  +    + G+  S + + +  +      P +V+      A  L +E +  
Sbjct: 30  IKGLLE--HVGDSALHITGIDQS-RPWAIGALSHRA--PVLVITATGREAEDLTAELRAM 84

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
               +V +F ++ +    E   P  D   ++ + I   ++ +R             +VV+
Sbjct: 85  LGD-SVAWFPAW-ETLPHERLSPAADVAGQR-AKILSHLNELR-------------VVVT 128

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           +   +      E+  +  + L+     + ++L   LV + Y+  D+   RG F   G  +
Sbjct: 129 AARGVSQPILQEAEGRNALLLETEKDYDLEDLTRQLVFRAYQHVDLVAKRGEFATRGGIL 188

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI--RNVETIKIYANSHYVTPRPTLNT 394
           +IFP+ + D   R+  +G++I EI EF     + I   +  +++I+     +        
Sbjct: 189 DIFPTTM-DRPVRLEFWGDEITEIREFSVADQRAIPDSSHASVEIFPARELLVIPGVAER 247

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A                  G L    +    +   L  L        +E     L     
Sbjct: 248 A------------------GDLALKYQGNPTLQELLSKLADGAPADGMEALIPAL----V 285

Query: 455 GEPPPTLFEYIPEDSLLFV---DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
             P  TL E +P+ + +     ++    +  +              A  G   P      
Sbjct: 286 DTPLVTLPELMPQGTHVIAVGPEKIRTRVADLQATDAEFLAAGWEAAAMGASGPIAAQGL 345

Query: 512 PLR------FEEWNCLRPTTIV---VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
            L       +E                A  G +E ++   + ++    PT   D      
Sbjct: 346 DLEASSYRSYESLEISARQAGCSWWTFAPTGMFEADEADTLPLDFEAGPTPRGD------ 399

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
              +Q+E++   +      G R       K   + + +   E+ I  +      +     
Sbjct: 400 --LSQIEEMMSLLLAHTSAGGRAAFIAPAKGAIKRMVDRFKEKGIPTKVATPGWEPTP-- 455

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECG---------LVAILD--------ADKEGFL 665
                      +V +   L   GL  P+           LV + +         D  G  
Sbjct: 456 ----------GEVTLYQALSHAGLVFPKVRKKAGSEALPLVVVTETDLTGNRVGDIAGAK 505

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTIT---KSIQLAI---DETTRRREKQLEHNKKHN 719
           R        +   A      V+     I    K  +  I   DET+RR    LE+     
Sbjct: 506 RRPAKRRNRVDPLALKTGDFVVHETHGIGRFLKMTERTITSGDETSRREYIVLEYAPAKR 565

Query: 720 INPQSVKEKIMEVID--PILLEDAATTNISIDAQQLSLSKKKGKAHLKS 766
             P       M+ +D     +         +       +KKK +A ++ 
Sbjct: 566 GQPADQLFVPMDSLDLLSKYVGGEKPALSKMGGSDWKNTKKKARAAVRE 614



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 64/200 (32%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + +SATP    LE     I E     T   D    +     Q +               
Sbjct: 802 VLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQIAAAIRRELLRDG 861

Query: 585 ILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +  V  K     + A DL E + E  I V   H ++      + ++     +FDVLV  
Sbjct: 862 QVFFVHNKVSDIEKKARDLRELVPEARIVVA--HGQMSEELLEQTVQGFWDREFDVLVCT 919

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDI     + + +A   G  +    L Q  GR  R+       +          
Sbjct: 920 TIVETGLDIANANTLIVENAHHMGLSQ----LHQLRGRVGRSRERGYAYFLYPKG----Q 971

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + E +  R   +  N    
Sbjct: 972 TLTENSYDRLATIAQNNDLG 991


>gi|262407555|ref|ZP_06084103.1| transcription-repair coupling factor [Bacteroides sp. 2_1_22]
 gi|262354363|gb|EEZ03455.1| transcription-repair coupling factor [Bacteroides sp. 2_1_22]
          Length = 1124

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 93/248 (37%), Gaps = 20/248 (8%)

Query: 159 QLLKGIHSREKVQLLL--GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            ++K +     VQ +   G+  S  +   + +++    P + +  +   A   Y +    
Sbjct: 17  AVMKRLLKDTSVQTVFCGGLCASAASLFSSVLVQESGCPFVFILGDLEEAGYFYHDLTQI 76

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIV 274
                V +F S +          R+  Y +K+++     + +R      L +R +  CIV
Sbjct: 77  LGTEKVLFFPSSFR---------RSIKYGQKDAAN----EILRTEVLSRLQKREEGLCIV 123

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
               +    + S +  S   ++L +G+ V+   +   L    ++  D     G + V G 
Sbjct: 124 TYPDALAEKVVSRKELSDKTLKLNVGEKVDTTFITDVLHSYGFEYVDYVYEPGQYAVRGS 183

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I++F S   +  +R+  FG+++E I  F   +         + I              +
Sbjct: 184 IIDVF-SFASEYPYRIDFFGDEVESIRTFEVESQLSREKKSGVSIVP--DLAVTGDVTTS 240

Query: 395 AMKYIKEE 402
            + +I ++
Sbjct: 241 FLDFIPKD 248



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 15/195 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +   +V  + D IN    +
Sbjct: 709 TLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFNEEV--ITDAINFEMSR 766

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++           +L   +     + RV   H +++  E  +II D     +DVL+  
Sbjct: 767 NGQVFFVNNRIANLPELKAMIERHIPDCRVAIGHGQMEPTELEKIILDFVNYDYDVLLAT 826

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 827 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLGSLTA 882

Query: 700 AIDETTRRREKQLEH 714
                 RRR + +E+
Sbjct: 883 E----GRRRLQAIEN 893


>gi|302205849|gb|ADL10191.1| transcription-repair coupling factor [Corynebacterium
           pseudotuberculosis C231]
 gi|302330407|gb|ADL20601.1| transcription-repair coupling factor [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276083|gb|ADO25982.1| transcription-repair coupling factor [Corynebacterium
           pseudotuberculosis I19]
          Length = 1264

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 103/649 (15%), Positives = 202/649 (31%), Gaps = 103/649 (15%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I  LL+  H  +    + G+  S + + +  +      P +V+      A  L +E +  
Sbjct: 29  IKGLLE--HVGDSALHITGIDQS-RPWAIGALSHRA--PVLVITATGREAEDLTAELRAM 83

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
               +V +F ++ +    E   P  D   ++ + I   ++ +R             +VV+
Sbjct: 84  LGD-SVAWFPAW-ETLPHERLSPAADVAGQR-AKILSHLNELR-------------VVVT 127

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           +   +      E+  +  + L+     + ++L   LV + Y+  D+   RG F   G  +
Sbjct: 128 AARGVSQPILQEAEGRNALLLETEKDYDLEDLTRQLVFRAYQHVDLVAKRGEFATRGGIL 187

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI--RNVETIKIYANSHYVTPRPTLNT 394
           +IFP+ + D   R+  +G++I EI EF     + I   +  +++I+     +        
Sbjct: 188 DIFPTTM-DRPVRLEFWGDEITEIREFSVADQRAIPDSSHASVEIFPARELLVIPGVAER 246

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A                  G L    +    +   L  L        +E     L     
Sbjct: 247 A------------------GDLALKYQGNPTLQELLSKLADGAPADGMEALIPAL----V 284

Query: 455 GEPPPTLFEYIPEDSLLFV---DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
             P  TL E +P+ + +     ++    +  +              A  G   P      
Sbjct: 285 DTPLVTLPELMPQGTHVIAVGPEKIRTRVADLQATDAEFLAAGWEAAAMGASGPIAAQGL 344

Query: 512 PLR------FEEWNCLRPTTIV---VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
            L       +E                A  G +E ++   + ++    PT   D      
Sbjct: 345 DLEASSYRSYESLEISARQAGCSWWTFAPTGMFEADEADTLPLDFEAGPTPRGD------ 398

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
              +Q+E++   +      G R       K   + + +   E+ I  +      +     
Sbjct: 399 --LSQIEEMMSLLLAHTSAGGRAAFIAPAKGAIKRMVDRFKEKGIPTKVATPGWEPTP-- 454

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECG---------LVAILD--------ADKEGFL 665
                      +V +   L   GL  P+           LV + +         D  G  
Sbjct: 455 ----------GEVTLYQALSHAGLVFPKVRKKAGSEALPLVVVTETDLTGNRVGDIAGAK 504

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTIT---KSIQLAI---DETTRRREKQLEHNKKHN 719
           R        +   A      V+     I    K  +  I   DET+RR    LE+     
Sbjct: 505 RRPAKRRNRVDPLALKTGDFVVHETHGIGRFLKMTERTITSGDETSRREYIVLEYAPAKR 564

Query: 720 INPQSVKEKIMEVID--PILLEDAATTNISIDAQQLSLSKKKGKAHLKS 766
             P       M+ +D     +         +       +KKK +A ++ 
Sbjct: 565 GQPADQLFVPMDSLDLLSKYVGGEKPALSKMGGSDWKNTKKKARAAVRE 613



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 64/200 (32%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + +SATP    LE     I E     T   D    +     Q +               
Sbjct: 801 VLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQIAAAIRRELLRDG 860

Query: 585 ILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +  V  K     + A DL E + E  I V   H ++      + ++     +FDVLV  
Sbjct: 861 QVFFVHNKVSDIEKKARDLRELVPEARIVVA--HGQMSEELLEQTVQGFWDREFDVLVCT 918

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDI     + + +A   G  +    L Q  GR  R+       +          
Sbjct: 919 TIVETGLDIANANTLIVENAHHMGLSQ----LHQLRGRVGRSRERGYAYFLYPKG----Q 970

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + E +  R   +  N    
Sbjct: 971 TLTENSYDRLATIAQNNDLG 990


>gi|207110368|ref|ZP_03244530.1| excinuclease ABC subunit B [Helicobacter pylori HPKX_438_CA4C1]
          Length = 107

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/97 (45%), Positives = 64/97 (65%)

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           L+F+E+       + VSATP   ELE  +  + EQIIRPTGL+DP  E+R +  QV+D++
Sbjct: 1   LKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLF 60

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           DEI L   +G R+L+T LTK+MAE+L +Y  E  ++ 
Sbjct: 61  DEIKLVVARGERVLITTLTKKMAEELCKYYAEWGLKA 97


>gi|329954432|ref|ZP_08295523.1| transcription-repair coupling factor [Bacteroides clarus YIT 12056]
 gi|328527400|gb|EGF54397.1| transcription-repair coupling factor [Bacteroides clarus YIT 12056]
          Length = 1157

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 80/216 (37%), Gaps = 16/216 (7%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           +     G+  S  +   + +++  + P + +  +   A   Y +         V +F S 
Sbjct: 58  RHLYCSGLCASAASLFSSVLVQRAECPFVFILGDLEEAGYFYHDLTQILGAERVLFFPSS 117

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGS 286
           +              Y +K+++     + +R      L +  +  C+V S  +    + S
Sbjct: 118 FRRAIK---------YGQKDAAN----EILRTEVLSRLQKGEEGLCVVTSPDALAEKVVS 164

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            +      ++L  G+ V+   +   L    ++  D     G + V G  I++F S   + 
Sbjct: 165 RKELGDKTLKLHTGEKVDMDFVTEVLRSYGFEYVDYVYEPGQYAVRGSIIDVF-SFSSEC 223

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
            +R+  FG+++E I  F   +       E I I  +
Sbjct: 224 PFRIDFFGDEVESIRTFEVESQLSKEKKEDIVIVPD 259



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 73/191 (38%), Gaps = 16/191 (8%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+       P+  E+ +     + + D IN    +
Sbjct: 743 TLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFSD--DIITDAINFEMSR 800

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIR---VRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++           +L + + ERNI    V   H +++  E  +II D     +DVL+ 
Sbjct: 801 NGQVFFVNNRISNLSEL-KAMIERNIPDCRVCIGHGQMEPAELEKIILDFVNYDYDVLLA 859

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DIP    + I  A   G     + L Q  GR  R+              S+ 
Sbjct: 860 TTIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLSSLT 915

Query: 699 LAIDETTRRRE 709
               E  RR +
Sbjct: 916 P---EAKRRLQ 923


>gi|124007360|ref|ZP_01692067.1| transcription-repair coupling factor [Microscilla marina ATCC
           23134]
 gi|123987193|gb|EAY26933.1| transcription-repair coupling factor [Microscilla marina ATCC
           23134]
          Length = 1137

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/362 (17%), Positives = 128/362 (35%), Gaps = 48/362 (13%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVI----EAMQR-PAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           E+VQ + G+ GS  +   +       EA QR   I++  ++  A   Y++ +N      +
Sbjct: 29  ERVQ-VKGLVGSLDSVMASATYKIHTEANQRINHILVLHDRDEALYFYNDLQNLLGKKNI 87

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-----------D 271
            +F S Y        V   +  +E+   +N    ++ +    S+                
Sbjct: 88  WFFPSSYKRPYKFMEVENANI-LERAEVLNRINQQISNPQVVSIDAGKANEENPTNQEGF 146

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            IV    + +  + +  S  +     ++G+ V+ + L   L    + + D     G F +
Sbjct: 147 MIVTYPSALVEKVINKRSLLENTFTAEVGEKVDIEFLAEILHTYDFDKTDFVYEAGQFSI 206

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPT 391
            G  ++IF S+  D  +R+  F +++E I  F P +   I  V  I I  N      +  
Sbjct: 207 RGGIVDIF-SYSNDYPYRLEFFDDELESIRLFDPESQLSIEQVSQIAIIPNVQTKLVQEV 265

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
             + + ++    K+ L + +    ++     +    +  E+LE +G+ Q I +       
Sbjct: 266 RESFLNFVPNNTKVWLKDYDATMDVIRKSFTKVANNF-KEILEKSGNTQVINDPDVLFET 324

Query: 452 RNPGEPPPTLFEY--------------------------IPEDSLLFVDESHVTIPQISG 485
           +   E    L E+                            +D  L +D+      Q   
Sbjct: 325 QASFEEK--LLEFTTVEFGKRFHFKSDKRLVQEAKPQPSFNKDFALLIDDLKERQSQGYA 382

Query: 486 MY 487
            +
Sbjct: 383 NF 384



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 72/193 (37%), Gaps = 10/193 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G     II+   L   PV         E + D I+   ++G 
Sbjct: 736 VLTLTATPIPRTLHFSLMGARDLSIIQTPPLNRQPVTTEQHTFNDEVIRDAISFELRRGG 795

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +    +   + +   +  V   H +++  +  + +     G++DVL+  N+
Sbjct: 796 QVFFVHNRVKDIISIANNVLKLVPDAHVGVAHGQMEGPKLEKTMMKFIEGEYDVLISTNI 855

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD+P    + I  A   G       L Q  GR  R+ N K   Y      ++    
Sbjct: 856 IEAGLDVPNANTIIIDMAHTFGL----ADLHQMRGRVGRS-NRKAYCYLLAPASTLLNV- 909

Query: 702 DETTRRREKQLEH 714
            E+ RR     E 
Sbjct: 910 -ESRRRLSALEEF 921


>gi|300726486|ref|ZP_07059932.1| transcription-repair coupling factor [Prevotella bryantii B14]
 gi|299776214|gb|EFI72778.1| transcription-repair coupling factor [Prevotella bryantii B14]
          Length = 1150

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 84/231 (36%), Gaps = 15/231 (6%)

Query: 154 PAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           P A + L+     +  K   L G+  S      + +   ++R  + +  +   A   Y +
Sbjct: 14  PQA-SALVDLFKKKSIKSLFLEGLVASSVPLLFSSIASRLKRTVVFVLDDNDEAGYFYHD 72

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                    V +F S Y          R   Y +++S    +I R    A  S    +  
Sbjct: 73  LTQIMGQEQVLFFPSSYR---------RAVKYGQRDS--GNEILRTEVLAKLSASSADAL 121

Query: 273 IVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            VVS    I  +  S +     I++LK G +    EL   L    ++  D     G F V
Sbjct: 122 FVVSYPEAIAELVVSKKRLDDHIIKLKAGQTCVLSELEQQLRSFGFEENDYVYEPGQFAV 181

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
            G  I+++ S+  +  +R+  FGN+I+ I  F             I+I   
Sbjct: 182 RGSIIDVY-SYSCEYPFRIDFFGNEIDTIRTFEVEDQLSKDRKTEIEIVPE 231



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 74/192 (38%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     I+R       P+         E + D IN    +  
Sbjct: 735 TLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIHTELTTYGHEVIADAINFEMSRNG 794

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   +++     R    H ++K  E  EI+       +DVL+   +
Sbjct: 795 QVYFVNNRISNLQEIANLIHKYVPDARIAIGHGQMKPDELEEILMGFMNYDYDVLLSTTI 854

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I +A   G     + L Q  GR  R+ N K   Y     KS+   +
Sbjct: 855 VANGIDISNANTIIINEAHHFGL----SDLHQMRGRVGRS-NRKAFCYLLAPPKSV---L 906

Query: 702 DETTRRREKQLE 713
               RRR + LE
Sbjct: 907 SVDARRRLEALE 918


>gi|238650718|ref|YP_002916571.1| transcription-repair coupling factor [Rickettsia peacockii str.
           Rustic]
 gi|238624816|gb|ACR47522.1| transcription-repair coupling factor [Rickettsia peacockii str.
           Rustic]
          Length = 1122

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 122/373 (32%), Gaps = 56/373 (15%)

Query: 179 SGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           + K+F  +    + +++  I+ A N+  A QLY +   F  +  + YF            
Sbjct: 9   AAKSFFAIDNFTKNLKQDFILSASNEEEALQLYKQALFFSSNENIYYF------------ 56

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERN----DCIVVSSVSCIYGIGSVESYSQM 293
            P  +T     +S N  I   R      L   N      ++  + + +  +   + +S+ 
Sbjct: 57  -PSYNTIPYDHTSPNANILSRRAETLIKLTTNNSNSNKLLITHTANLLNKLPPKDFFSKY 115

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            ++L         EL   LV+  + R    I  G F V G+ I+I        A+R+   
Sbjct: 116 FLKLSPKMKFTTDELAMFLVENSFTRNASSIDAGEFAVRGEIIDII--LSGPKAYRIHFS 173

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
              IE I EF   T    ++   + I   +  V    T+                 L   
Sbjct: 174 WGYIESIKEFDIDTQISTKSCRELIISPANEIVLNSETIGNFKNN----------YLRNF 223

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
           G       L        E + +       E            +    L +Y+ +   +F 
Sbjct: 224 GVNHTDNAL-------YEAVISGRKFTGYEQLLPLFY-----DSCSNLIDYLNDPIFIFD 271

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN-CLRPTTIVVSATP 532
           + S   I +        +              +  +   L+F  +   L PT++  +A+ 
Sbjct: 272 NLSKQAILEFEHSDNDFYS-------------ARSEANKLKFNSFYPTLSPTSLYFTASE 318

Query: 533 GSWELEQCQGIIV 545
            +  LEQ   I++
Sbjct: 319 ITELLEQKNNILL 331



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 9/178 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  T  ++   E+ ++    + V   D +     +
Sbjct: 732 HVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRR-EVHTSVMPFDPVIIRDALLREHFR 790

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G R    V   +  ED+ + L +    + Y   + ++   +  E++ +   GKFD+LV  
Sbjct: 791 GGRSFYVVPRIKDIEDIAKQLKQIVPELSYKIAYGKMTPSKIDEVMSEFYAGKFDILVST 850

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DI E   + I +AD  G  +    L Q  GR  R              K +
Sbjct: 851 TIIESGIDIAEANTMIIHNADMLGLSQ----LYQLRGRIGRGKMRGYAYLTVASNKKM 904


>gi|293373528|ref|ZP_06619880.1| transcription-repair coupling factor [Bacteroides ovatus SD CMC 3f]
 gi|292631492|gb|EFF50118.1| transcription-repair coupling factor [Bacteroides ovatus SD CMC 3f]
          Length = 1119

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 20/248 (8%)

Query: 159 QLLKGIHSREKVQLLL--GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            ++K +     VQ +   G+  S  +   + +++    P + +  +   A   Y +    
Sbjct: 12  AVMKRLLKDTSVQTVFCGGLCASAASLFSSVLVQEGGCPFVFILGDLEEAGYFYHDLTQI 71

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIV 274
                V +F S +          R+  Y +K+++     + +R      L +  +  CIV
Sbjct: 72  LGTERVLFFPSSFR---------RSIKYGQKDAAN----EILRTEVLSRLQKGEEGLCIV 118

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
               +    + S +  S   ++L +G+ V+   +   L    ++  D     G + V G 
Sbjct: 119 TYPDALAEKVVSRKELSNKTLKLNVGEKVDTTFITDVLHSYGFEYVDYVYEPGQYAVRGS 178

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I++F S   +  +R+  FG+++E +  F   +       + + I              +
Sbjct: 179 IIDVF-SFASEYPYRIDFFGDEVESVRTFEVESQLSREKKDGVSIVP--DLAVTGDVTTS 235

Query: 395 AMKYIKEE 402
            + +I +E
Sbjct: 236 FLDFIPKE 243



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 15/195 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +   +V  + D IN    +
Sbjct: 704 TLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFNEEV--ITDAINFEMSR 761

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++           +L   +     + RV   H +++  E  +II D     +DVL+  
Sbjct: 762 NGQVFFVNNRIANLPELKAMIERHIPDCRVAIGHGQMEPTELEKIILDFVNYDYDVLLAT 821

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 822 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLGSLTA 877

Query: 700 AIDETTRRREKQLEH 714
                 RRR + +E+
Sbjct: 878 E----GRRRLQAIEN 888


>gi|237722279|ref|ZP_04552760.1| transcription-repair coupling factor [Bacteroides sp. 2_2_4]
 gi|229448089|gb|EEO53880.1| transcription-repair coupling factor [Bacteroides sp. 2_2_4]
          Length = 1124

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 20/248 (8%)

Query: 159 QLLKGIHSREKVQLLL--GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            ++K +     VQ +   G+  S  +   + +++    P + +  +   A   Y +    
Sbjct: 17  AVMKRLLKDTSVQTVFCGGLCASAASLFSSVLVQEGGCPFVFILGDLEEAGYFYHDLTQI 76

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIV 274
                V +F S +          R+  Y +K+++     + +R      L +  +  CIV
Sbjct: 77  LGTERVLFFPSSFR---------RSIKYGQKDAAN----EILRTEVLSRLQKGEEGLCIV 123

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
               +    + S +  S   ++L +G+ V+   +   L    ++  D     G + V G 
Sbjct: 124 TYPDALAEKVVSRKELSNKTLKLNVGEKVDTTFITDVLHSYGFEYVDYVYEPGQYAVRGS 183

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I++F S   +  +R+  FG+++E +  F   +       + + I              +
Sbjct: 184 IIDVF-SFASEYPYRIDFFGDEVESVRTFEVESQLSREKKDGVSIVP--DLAVTGDVTTS 240

Query: 395 AMKYIKEE 402
            + +I +E
Sbjct: 241 FLDFIPKE 248



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 15/195 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +   +V  + D IN    +
Sbjct: 709 TLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFNEEV--ITDAINFEMSR 766

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++           +L   +     + RV   H +++  E  +II D     +DVL+  
Sbjct: 767 NGQVFFVNNRIANLPELKAMIERHIPDCRVAIGHGQMEPTELEKIILDFVNYDYDVLLAT 826

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 827 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLGSLTA 882

Query: 700 AIDETTRRREKQLEH 714
                 RRR + +E+
Sbjct: 883 E----GRRRLQAIEN 893


>gi|260170991|ref|ZP_05757403.1| transcription-repair coupling factor [Bacteroides sp. D2]
 gi|315919312|ref|ZP_07915552.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693187|gb|EFS30022.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1120

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 20/248 (8%)

Query: 159 QLLKGIHSREKVQLLL--GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            ++K +     VQ +   G+  S  +   + +++    P + +  +   A   Y +    
Sbjct: 17  AVMKRLLKDTSVQTVFCGGLCASAASLFSSVLVQEGGCPFVFILGDLEEAGYFYHDLTQI 76

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIV 274
                V +F S +          R+  Y +K+++     + +R      L +  +  CIV
Sbjct: 77  LGTERVLFFPSSFR---------RSIKYGQKDAAN----EILRTEVLSRLQKGEEGLCIV 123

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
               +    + S +  S   ++L +G+ V+   +   L    ++  D     G + V G 
Sbjct: 124 TYPDALAEKVVSRKELSNKTLKLNVGEKVDTTFITDVLHSYGFEYVDYVYEPGQYAVRGS 183

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I++F S   +  +R+  FG+++E +  F   +       + + I              +
Sbjct: 184 IIDVF-SFASEYPYRIDFFGDEVESVRTFEVESQLSREKKDGVSIVP--DLAVTGDVTTS 240

Query: 395 AMKYIKEE 402
            + +I +E
Sbjct: 241 FLDFIPKE 248



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 15/195 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +   +V  + D IN    +
Sbjct: 709 TLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFNEEV--ITDAINFEMSR 766

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++           +L   +     + RV   H +++  E  +II D     +DVL+  
Sbjct: 767 NGQVFFVNNRIANLPELKAMIERHIPDCRVAIGHGQMEPTELEKIILDFVNYDYDVLLAT 826

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 827 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLGSLTA 882

Query: 700 AIDETTRRREKQLEH 714
                 RRR + +E+
Sbjct: 883 E----GRRRLQAIEN 893


>gi|126641668|ref|YP_001084652.1| transcription-repair coupling protein [Acinetobacter baumannii ATCC
           17978]
          Length = 1054

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/385 (13%), Positives = 123/385 (31%), Gaps = 49/385 (12%)

Query: 267 LERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
           + +   +++S+ +    +            +K+G   + ++    LV+  Y   D     
Sbjct: 1   MPQQGVLLISASTLAQRVAPYSWVLGEHFDIKVGQKFDLEQQKLRLVQAGYHLVDTVYDH 60

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           G F V G  ++IF +  ++   R+ +F ++I+ +  F P T +    +++  +     + 
Sbjct: 61  GEFAVRGSIMDIF-ASGQESPIRIDLFDDEIDSLKFFDPETQRTTTTLKSFTVLPAKEFP 119

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
                            + R  E        +            + +    +   IE Y 
Sbjct: 120 LKEGRSV---------FRDRYSEFFPTANPKK--------NPIYQDVLDGIASPGIEFYL 162

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVT-----IPQISGMYRGDFHRKATLAEYG 501
                +   +       Y+P++ ++       T       ++   Y    H         
Sbjct: 163 PLFFDKEQMQTQSMFTTYLPKNCIVITTNDIDTDLTSFWKEVMRRYEDRRHNMDQPILAP 222

Query: 502 FRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
             L    ++      ++  +     +VSA      +E+  G +  +  +P  L   P + 
Sbjct: 223 EELFISPNHLLSALNQFPRM-----LVSA----ETIEEKAGALNLKTEQPPKLPVDPKKE 273

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           +     V+   DE N        +LL   +    E L + L           S +  +  
Sbjct: 274 KPFSA-VKKYIDEANHP------VLLVAESAGRRESLKDALR----------SSLGEIPN 316

Query: 622 IEIIRDLRLGKFDVLVGINLLREGL 646
           +E     ++ +F + +    L  GL
Sbjct: 317 VENFEQFQISQFAIAITNAPLDRGL 341



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 95/259 (36%), Gaps = 52/259 (20%)

Query: 465 IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
             +  L+ VDE H    +     +        L      +P     R L    ++ +R  
Sbjct: 626 FKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIP-----RTLNMA-FSGMRDL 679

Query: 525 TIVVSATP-------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN- 576
           +I+  ATP        ++  E     I E I+R                QV  +++E+  
Sbjct: 680 SII--ATPPARRLAVKTFVQEHTDASIKEAILRELLR----------GGQVYFLHNEVET 727

Query: 577 -LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A + +R+L+                E  + V   H +++  E  ++++     +++V
Sbjct: 728 IERAAENIRVLV---------------PEARVAVA--HGQMRERELEQVMQQFYHKEYNV 770

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +  
Sbjct: 771 LVCSTIIETGIDVPNANTILIERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVP 823

Query: 696 SIQLAIDETTRRR-EKQLE 713
           SI+    +  +R    Q  
Sbjct: 824 SIKHLKGDAEKRLDAIQRA 842



 Score = 39.3 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 88/232 (37%), Gaps = 32/232 (13%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E       +A Q G ++ + V T    ++  E   +   +  +R+  +         
Sbjct: 539 GKTEVAMRAAFIAVQNGKQVAVLVPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTH 598

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           ++ I DL  GK D++VG + LL+E +   + GL+ + +  + G    +        +A R
Sbjct: 599 LKNIEDLANGKVDIVVGTHKLLQENVQFKDLGLMVVDEEHRFGVRDKERI------KALR 652

Query: 681 NVNSKVILYADTITKSIQLA---------IDETTRRREKQLEHNKKHNINPQSVKEKIME 731
                + L A  I +++ +A         I     RR       ++H     S+KE I+ 
Sbjct: 653 ADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEH--TDASIKEAILR 710

Query: 732 VI----------DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
            +          + +   + A  NI +   +  ++   G+   + L + M  
Sbjct: 711 ELLRGGQVYFLHNEVETIERAAENIRVLVPEARVAVAHGQMRERELEQVMQQ 762


>gi|29345662|ref|NP_809165.1| transcription-repair coupling factor [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253567649|ref|ZP_04845060.1| transcription-repair coupling factor [Bacteroides sp. 1_1_6]
 gi|29337554|gb|AAO75359.1| transcription-repair coupling factor [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251841722|gb|EES69802.1| transcription-repair coupling factor [Bacteroides sp. 1_1_6]
          Length = 1127

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 20/248 (8%)

Query: 159 QLLKGIHSREKVQLLL--GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            +++ +     VQ +   G+  S  +   + +++    P + +  +   A   Y +    
Sbjct: 17  AVMERLLKDASVQTIFCGGLCASSASLFSSVLVKQDVCPFVFVLGDLEEAGYFYHDLTQV 76

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIV 274
                V +F S +          R+  Y +K+++     + +R      L +  +  CIV
Sbjct: 77  LGTEKVFFFPSSFR---------RSIKYGQKDAAN----EILRTEVLSRLQKGEEGLCIV 123

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
               +    + S +  S   ++L +G+ ++   +   L    ++  D     G + V G 
Sbjct: 124 TYPDALAEKVVSRKELSDKTLKLNVGEKLDTTFITDVLHSYGFEYVDYVYEPGQYAVRGS 183

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I++F S   +  +R+  FG+++E I  F   +       E + I              +
Sbjct: 184 IIDVF-SFASEYPYRIDFFGDEVESIRTFEVESQLSRERKEGVAIVP--DLAVTGDVTTS 240

Query: 395 AMKYIKEE 402
            + +I +E
Sbjct: 241 FLDFIPKE 248



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +   +V  + D IN    +
Sbjct: 709 TLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFNEEV--ITDAINFEMSR 766

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++           +L   +     + RV   H +++  +  +II D     +DVL+  
Sbjct: 767 NGQVFFVNNRIANLPELKVMIERHIPDCRVAIGHGQMEPTQLEQIIFDFVNYDYDVLLAT 826

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+ N K   Y      S   
Sbjct: 827 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRS-NKKAFCYLLAPPLSSLT 881

Query: 700 AIDETTRRRE 709
           A  E  RR +
Sbjct: 882 A--EGKRRLQ 889


>gi|288924758|ref|ZP_06418695.1| transcription-repair coupling factor [Prevotella buccae D17]
 gi|288338545|gb|EFC76894.1| transcription-repair coupling factor [Prevotella buccae D17]
          Length = 1155

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 91/247 (36%), Gaps = 26/247 (10%)

Query: 147 YHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKIL 205
           Y PS   P A   L + +  +  K   L G+  S      + + + + R  + +      
Sbjct: 10  YAPS---PQA-KALFQTLEDKSVKTVFLQGLLASSAPMLFSSLADRLARVVLFILDEADE 65

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A   Y +         V +F S Y          R   Y +++++ NE +     +   S
Sbjct: 66  AGYFYHDLTQLMGQEQVFFFPSSYK---------RAVKYGQRDAA-NEILRTEVLARISS 115

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQ----------LKIGDSVEQKELLSSLVKQ 315
             E        + S ++ +   E+ ++++V           LK G +V+   L   L + 
Sbjct: 116 AGEAARSATAPNPSTLFIVTHPEALAELVVTQQNLDTQLVRLKTGQTVDLPSLEKRLREL 175

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            ++  D     G F V G  ++I+ S+  +  +R+  FG++I+ I  F            
Sbjct: 176 GFQETDYVYEPGQFAVRGSILDIY-SYSCEYPFRIDFFGDEIDTIRTFEVEDQLSKDKKT 234

Query: 376 TIKIYAN 382
            ++I   
Sbjct: 235 EVEIVPE 241



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 17/196 (8%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     IIR       P+    A    E + D IN    +  
Sbjct: 744 TLTMSATPIPRTLQFSLMGARDMSIIRTPPPNRYPIHTELASYGHEVIADAINFEMSRNG 803

Query: 584 RILLTVLTK--RMAEDLT---EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++   V  +   + E      +Y+ +  I +   H ++K  E  +II       +DVL+ 
Sbjct: 804 QV-YFVNDRISNLPEIAALIKKYVPDCRIAIG--HGQMKPEELEQIIMGFINYDYDVLLS 860

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DI     + I DA + G     + L Q  GR  R+ N K   Y     KS+ 
Sbjct: 861 TTIVENGIDISNANTIIINDAHRFGL----SDLHQMRGRVGRS-NRKAFCYLLAPPKSV- 914

Query: 699 LAIDETTRRREKQLEH 714
             +    RRR + LE+
Sbjct: 915 --LTPEARRRLEALEN 928


>gi|315607772|ref|ZP_07882765.1| transcription-repair coupling factor [Prevotella buccae ATCC 33574]
 gi|315250241|gb|EFU30237.1| transcription-repair coupling factor [Prevotella buccae ATCC 33574]
          Length = 1155

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 91/247 (36%), Gaps = 26/247 (10%)

Query: 147 YHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKIL 205
           Y PS   P A   L + +  +  K   L G+  S      + + + + R  + +      
Sbjct: 10  YAPS---PQA-KALFQTLEDKSVKTVFLQGLLASSAPMLFSSLADRLARVVLFILDEADE 65

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
           A   Y +         V +F S Y          R   Y +++++ NE +     +   S
Sbjct: 66  AGYFYHDLTQLMGQEQVFFFPSSYK---------RAVKYGQRDAA-NEILRTEVLARISS 115

Query: 266 LLERNDCIVVSSVSCIYGIGSVESYSQMIVQ----------LKIGDSVEQKELLSSLVKQ 315
             E        + S ++ +   E+ ++++V           LK G +V+   L   L + 
Sbjct: 116 AGEAARSATAPNPSTLFIVTHPEALAELVVTQQNLDTQLVRLKTGQTVDLPSLEKRLREL 175

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            ++  D     G F V G  ++I+ S+  +  +R+  FG++I+ I  F            
Sbjct: 176 GFQETDYVYEPGQFAVRGSILDIY-SYSCEYPFRIDFFGDEIDTIRTFEVEDQLSKDKKT 234

Query: 376 TIKIYAN 382
            ++I   
Sbjct: 235 EVEIVPE 241



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 17/196 (8%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     IIR       P+    A    E + D IN    +  
Sbjct: 744 TLTMSATPIPRTLQFSLMGARDMSIIRTPPPNRYPIHTELASYGHEVIADAINFEMSRNG 803

Query: 584 RILLTVLTK--RMAEDLT---EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++   V  +   + E      +Y+ +  I +   H ++K  E  +II       +DVL+ 
Sbjct: 804 QV-YFVNDRISNLPEIAALIKKYVPDCRIAIG--HGQMKPEELEQIIMGFMNYDYDVLLS 860

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DI     + I DA + G     + L Q  GR  R+ N K   Y     KS+ 
Sbjct: 861 TTIVENGIDISNANTIIINDAHRFGL----SDLHQMRGRVGRS-NRKAFCYLLAPPKSV- 914

Query: 699 LAIDETTRRREKQLEH 714
             +    RRR + LE+
Sbjct: 915 --LTPEARRRLEALEN 928


>gi|293628906|dbj|BAJ04860.1| vasa homolog [Cynops pyrrhogaster]
          Length = 717

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 102/262 (38%), Gaps = 39/262 (14%)

Query: 524 TTIVVSAT------PGSWELEQCQ--GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT        + E  +     ++V Q+      V+  +       + + + + +
Sbjct: 462 QTLMFSATFPERIQSLAKEFLKSDYLFVVVGQVGGACSDVEQIIIPVGQHGKKDKLVEIL 521

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   R ++ V TK+ A+ LT  L + N+    +H +    ER E + D R GK +V
Sbjct: 522 QGLGT--ERTMVFVKTKKKADYLTTLLCQENVLATSIHGDRLQKEREEALADFRFGKCNV 579

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTIT 694
           LV  N+   GLDI     V I D        +    +  IGR  R  N  K I + D+  
Sbjct: 580 LVATNVAARGLDIENVQHVIIFD-----LSDNIEEYVHRIGRTGRCGNVGKAITFFDSDD 634

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED----AATTNISIDA 750
                  D T  R   ++  + +  +              P+ LE+    A+ T  SI +
Sbjct: 635 NE-----DRTVARSLVKVLSDAQQEV--------------PVWLEEIAFSASGTFSSIGS 675

Query: 751 QQLSLSKKKGKAHLKSLRKQMH 772
              S+  ++G +H+     Q H
Sbjct: 676 TFASVDSRRGVSHIPGGHAQSH 697


>gi|291557562|emb|CBL34679.1| Helicase subunit of the DNA excision repair complex [Eubacterium
           siraeum V10Sc8a]
          Length = 93

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 8/100 (8%)

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
           ++ A+ ET RRRE Q+++N++H I P+++ + +  V++    +D          Q+   +
Sbjct: 1   MEKAVTETNRRREIQMKYNEEHGITPKTIVKDVRAVLEISSGKD--------KGQKRKYT 52

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSS 796
           K + +A +K    +M  AA  L+FE AA +RD+IK L+ S
Sbjct: 53  KAEREALIKQYTAEMKNAAKLLDFEHAAYLRDKIKELQES 92


>gi|323342263|ref|ZP_08082495.1| transcription-repair-coupling factor [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463375|gb|EFY08569.1| transcription-repair-coupling factor [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 1138

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 67/429 (15%), Positives = 149/429 (34%), Gaps = 55/429 (12%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
           ++P  ++  N+  A+ LY+E K     NA   + ++ +  + EA V             +
Sbjct: 44  KKPLFIIKENEQQASNLYNEIK-HLDENANVVYYNHEESLRVEAIV------------QS 90

Query: 253 EQIDRMRHSATRSLLERNDCIVVS-SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
           E +   R  A   ++  +  I ++ +++ +  +   E     I+ +K GD  E  +L   
Sbjct: 91  EIMKANRIDALFKIINGDFDICITHAIASVRKLSPAEVLKASIINIKTGDEWEPLQLARE 150

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           L +  Y R        T+ + G   ++F   +E    R+  F  +++ +  F     + +
Sbjct: 151 LERLGYTRVKYVEKPFTYAIRGGVCDVFSIQME-QPLRIEFFDVEVDSLRYFDIENQRSL 209

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431
             VE   I   +  +     +                 L  +   +E   L   +    E
Sbjct: 210 SRVEEATIAFATDILLKENDIQEISNA-----------LTSKIEGIENNDLIHEMEQKRE 258

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           +L+      ++     + +         T+++Y+ +D+  ++      I  I    + + 
Sbjct: 259 LLQMNQFDVTLYPLLSFWSNY------ATIYDYL-KDANTYMSP----IEAIERTLKQNA 307

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLR----PTTIVVSATPGS-WELEQCQGIIVE 546
               T  E  + + + M      FE +  ++       I    T G  +       I+ E
Sbjct: 308 LDSHTFIEEQYEM-NQMIFVSDIFESFERIKAKHTHREIFEYQTEGEVFIPWHSANIVSE 366

Query: 547 QIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
            I +    +      +     +++  + D I +  QQG+            + LT+    
Sbjct: 367 SIEQTMKWLKKEAITQKVIITLDEDTMEDFIKIMLQQGV----------EYQVLTDKPTS 416

Query: 605 RNIRVRYMH 613
             I + Y H
Sbjct: 417 NGIYIDYGH 425



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 71/193 (36%), Gaps = 13/193 (6%)

Query: 525 TIVVSATPGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
            + +SATP    L+        + Q+  P     P +     + Q + + D I+    + 
Sbjct: 745 VLSLSATPIPRTLQMSLIGLRSLSQLNMPPSNRLPVMTYIIEKNQ-KTINDIISKELNRD 803

Query: 583 LRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++            +   +        V  +H +++  E  +++      + +VLV   
Sbjct: 804 GQVFYLFNNVEQIYSVASVIANHVEAANVAVVHGQMERHEIEDVMIRFISKEINVLVCTT 863

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  G+DIP    + + +A + G  +    L Q  GR  R+       +        +  
Sbjct: 864 IIETGIDIPNANTIIVDNAHRFGLSQ----LYQIKGRVGRSDRLAYAYFVVP----NKRG 915

Query: 701 IDETTRRREKQLE 713
           + E  ++R + ++
Sbjct: 916 LTELAQKRLQAIK 928


>gi|298384566|ref|ZP_06994126.1| transcription-repair coupling factor [Bacteroides sp. 1_1_14]
 gi|298262845|gb|EFI05709.1| transcription-repair coupling factor [Bacteroides sp. 1_1_14]
          Length = 1127

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 20/248 (8%)

Query: 159 QLLKGIHSREKVQLLL--GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            +++ +     VQ +   G+  S  +   + +++    P + +  +   A   Y +    
Sbjct: 17  AVMERLLKDASVQTIFCGGLCASSASLFSSVLVKQDVCPFVFVLGDLEEAGYFYHDLTQV 76

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIV 274
                V +F S +          R+  Y +K+++     + +R      L +  +  CIV
Sbjct: 77  LGTEKVLFFPSSFR---------RSIKYGQKDAAN----EILRTEVLSRLQKGEEGLCIV 123

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
               +    + S +  S   ++L +G+ ++   +   L    ++  D     G + V G 
Sbjct: 124 TYPDALAEKVVSRKELSDKTLKLNVGEKLDTTFITDVLHSYGFEYVDYVYEPGQYAVRGS 183

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I++F S   +  +R+  FG+++E I  F   +       E + I              +
Sbjct: 184 IIDVF-SFASEYPYRIDFFGDEVESIRTFEVESQLSRERKEGVAIVP--DLAVTGDVTTS 240

Query: 395 AMKYIKEE 402
            + +I +E
Sbjct: 241 FLDFIPKE 248



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +   +V  + D IN    +
Sbjct: 709 TLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFNEEV--ITDAINFEMSR 766

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++           +L   +     + RV   H +++  +  +II D     +DVL+  
Sbjct: 767 NGQVFFVNNRIANLPELKAMIERHIPDCRVAIGHGQMEPTQLEQIIFDFVNYDYDVLLAT 826

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+ N K   Y      S   
Sbjct: 827 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRS-NKKAFCYLLAPPLSSLT 881

Query: 700 AIDETTRRRE 709
           A  E  RR +
Sbjct: 882 A--EGKRRLQ 889


>gi|319654684|ref|ZP_08008763.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317393600|gb|EFV74359.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 472

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/259 (22%), Positives = 112/259 (43%), Gaps = 22/259 (8%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRP-------TGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT P        + +   QI+R        + +    +E+   + + + +   +
Sbjct: 158 QTLLFSATMPAPIRRMAERFMKEPQIVRVKAKEMTVSSIEQYYIEVHE-KNKFDVLTRLL 216

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   Q     ++   TKR  ++L E L  R      +H ++   +RI ++R  + G  DV
Sbjct: 217 D--IQSPELAIVFGRTKRRVDELAEALNLRGYMAEGIHGDLSQAKRISVLRKFKEGSIDV 274

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   + V + + +   
Sbjct: 275 LVATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKTGVAMTFINPRE 329

Query: 695 KSIQLAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
           KS    ++ TT+R+ ++++    ++      ++V EKIM+ I+   LE        + AQ
Sbjct: 330 KSYLHVVERTTKRKMERMDAPTLDEALEGQQKAVMEKIMQTIEENNLESYKEAADELLAQ 389

Query: 752 QLSLSKKKGKAHLKSLRKQ 770
           + + +    +A LK L K+
Sbjct: 390 KDASTV--VQAVLKMLTKE 406


>gi|160882450|ref|ZP_02063453.1| hypothetical protein BACOVA_00401 [Bacteroides ovatus ATCC 8483]
 gi|156112162|gb|EDO13907.1| hypothetical protein BACOVA_00401 [Bacteroides ovatus ATCC 8483]
          Length = 1120

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 20/248 (8%)

Query: 159 QLLKGIHSREKVQLLL--GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            ++K +     VQ +   G+  S  +   + +++    P + +  +   A   Y +    
Sbjct: 17  AVMKRLLKDTSVQTVFCGGLCASAASLFSSVLVQEGGCPFVFILGDLEEAGYFYHDLTQI 76

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIV 274
                V +F S +          R+  Y +K+++     + +R      L +  +  CIV
Sbjct: 77  LGTERVLFFPSSFR---------RSIKYGQKDAAN----EILRTEVLSRLQKGEEGLCIV 123

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
               +    + S +  S   ++L +G+ V+   +   L    ++  D     G + V G 
Sbjct: 124 TYPDALAEKVVSRKELSNKTLKLNVGEKVDTTFITDVLHSYGFEYVDYVYEPGQYAVRGS 183

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I++F S   +  +R+  FG+++E +  F   +       + + I              +
Sbjct: 184 IIDVF-SFASEYPYRIDFFGDEVESVRTFEVESQLSREKKDGVSIVP--DLAVTGDVATS 240

Query: 395 AMKYIKEE 402
            + +I +E
Sbjct: 241 FLDFIPKE 248



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 15/195 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +   +V  + D IN    +
Sbjct: 709 TLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFNEEV--ITDAINFEMSR 766

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++           +L   +     + RV   H +++  E  +II D     +DVL+  
Sbjct: 767 NGQVFFVNNRIANLPELKAMIERHIPDCRVAIGHGQMEPTELEKIILDFVNYDYDVLLAT 826

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 827 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLGSLTA 882

Query: 700 AIDETTRRREKQLEH 714
                 RRR + +E+
Sbjct: 883 E----GRRRLQAIEN 893


>gi|78779345|ref|YP_397457.1| transcriptional-repair coupling factor [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712844|gb|ABB50021.1| transcription-repair coupling factor [Prochlorococcus marinus str.
           MIT 9312]
          Length = 1174

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 99/540 (18%), Positives = 198/540 (36%), Gaps = 83/540 (15%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +L+K I S+ K   ++G +   K+  +  + +   +  +++ PN  +A +    F++   
Sbjct: 18  ELIKKI-SKNKELNIVGSSRYAKSIILNSIAKKEYKNILLICPNTEIAYKWIGYFES-IN 75

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
             AV Y       Y P  ++P       KE    +       S      ++   IV+S+ 
Sbjct: 76  DKAVLY-------YPPTEHLPYASINKSKEIEFTQLTV---LSKLIKKEKKELNIVISTE 125

Query: 279 SCIYG-IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             +   + +    ++  + L+ G  +E ++L + L    Y +++I    G +   G+ I+
Sbjct: 126 RSLQPHLINKNLLTENKLALQKGVQIELQDLANKLTLLGYTKENITSTEGYWSRRGEIID 185

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           I+P + E    R+  F N IE+I E+ P T + + N+  I+I      +           
Sbjct: 186 IYPVNNE-FPIRLEFFDNVIEKIREYDPHTQKTLENINNIEIIHAGFGLL---------- 234

Query: 398 YIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457
            IK++LK                 L +   ++ E +          N  RYL      + 
Sbjct: 235 -IKDKLK----------------NLSKNHIFNSEDVNKN-------NLDRYLGIIE--KK 268

Query: 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA-------EYGFRLPSCMDN 510
           P  + ++I ++++L +DE        +  Y          A       +          N
Sbjct: 269 PSNIIDFIDKETILVIDELEDCKKFTNNWYIDSEINFDNFANELNENLKNNNINLKAKPN 328

Query: 511 RPLRF-EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
             L+F E  N L    ++       +E E  +  I  + +     ++      S    + 
Sbjct: 329 LHLKFDEILNSLGNFNLI-----KLYEFE-SKANIHNRFLLNDKRLN------SYSKNIG 376

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +  +IN   +   ++ +        + L   L+E      ++++     E  + I +  
Sbjct: 377 KLAKDINKNIKNKEKVWILSAQPLRTKTL---LFEHECNTNFLNNPNDIDEAFKSINNST 433

Query: 630 LGKFDVLVGINLLR---EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
                 L+  N      EG  +P   +V I   DKE F +        I R  R+VNS +
Sbjct: 434 P-----LIIKNKNNYEIEGFYLPIWKVVLI--TDKELFSQQYLFNNVFIRRKKRSVNSNI 486



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 71/197 (36%), Gaps = 5/197 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-VEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +  T       ++   +   ++ +   IN    +G 
Sbjct: 764 VLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAINQELDRGG 823

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I   +      +     L      ++++  H ++   E    +     G+ D+++   +
Sbjct: 824 QIFYVLPRISDIDQAVNKLKNMFPNLKFIIAHGQMNETELENSMISFNNGEVDLMICTTI 883

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKSIQLA 700
           +  GLDIP+   + I D+ K G L     L   +GR+    ++ +     + I  S +  
Sbjct: 884 IESGLDIPKVNTIIIEDSHKFG-LSQLYQLRGRVGRSGIQAHAWLFYPNLNKINDSAKQR 942

Query: 701 IDETTRRREKQLEHNKK 717
           +       E    +   
Sbjct: 943 LKAIKDFSELGSGYQLA 959



 Score = 38.2 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 146 DYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAP 201
            Y P+ DQ  A+ ++   +   +   +L+ G  G GKT    + I       +  I++AP
Sbjct: 611 PYQPTPDQITAVKEIKSDMESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQVILLAP 670

Query: 202 NKILAAQLYSEFKNFFPH 219
             ILA Q +    N F  
Sbjct: 671 TTILAQQHWRTINNRFSP 688


>gi|189218310|ref|YP_001938952.1| transcription-repair coupling factor mfd (superfamily II helicase)
           [Methylacidiphilum infernorum V4]
 gi|189185168|gb|ACD82353.1| Transcription-repair coupling factor mfd (superfamily II helicase)
           [Methylacidiphilum infernorum V4]
          Length = 1060

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 21/225 (9%)

Query: 160 LLKGIHSR---EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           LLK +H R   ++   +  +  SG++F +A  +   + P +V+A N     ++    + +
Sbjct: 40  LLKNLHHRIIEQRNCAIDSLPLSGQSFFLASFLRVYRGPLLVIAENIKKTNEIALGLECW 99

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                     S Y        VP        ES  +      R S   SLL+    I+++
Sbjct: 100 ---------GSPYLILPEVEPVPA-------ESLPDPTFLAERLSTAYSLLDFPSGIIIT 143

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +   +   + S E   +  + L + +S ++K ++  LV   Y+R D    RG F V G  
Sbjct: 144 TEQAMEEALPSPELLKEKRLPLAVENSFDRKAVIEKLVTAGYERVDSVDCRGQFAVRGAI 203

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           I+ F         R+   GN +  + +F P+T +  + +    + 
Sbjct: 204 IDTF-CWDSCYPLRMEWEGNRLISLRQFDPITQRSFKPLAQAHLC 247



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 78/214 (36%), Gaps = 17/214 (7%)

Query: 513 LRFEEWNCLRPT--TIVVSATPGS--WELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQ 567
           L+ E+W         +++SATP      L       +  I   P         +     +
Sbjct: 668 LQKEKWKEKFRFIDVLLLSATPIPRTLYLAMAGARDMSLIETPPPNRFPIETIVGPYDER 727

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEII 625
           V  +   I     +G ++       R  E +   L     +I++   H  +K  E  E++
Sbjct: 728 V--IRQAIERELNRGGQVYFLHNRIRTIEKVASRLKSLLPSIKIDIGHGRMKKHELEEVM 785

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
                GK DVL+  +++  GLDIP    + I  AD  G       L Q  GR  R+ N K
Sbjct: 786 ERFVEGKIDVLLATSIIENGLDIPNANTIIIDRADLFGL----ADLYQLRGRVGRS-NQK 840

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
              Y         L I    ++R K ++ + +  
Sbjct: 841 AYAYLLLPRD---LFIQSDAKKRIKAMQEHSQLG 871


>gi|269215535|ref|ZP_06159389.1| transcription-repair coupling factor [Slackia exigua ATCC 700122]
 gi|269131022|gb|EEZ62097.1| transcription-repair coupling factor [Slackia exigua ATCC 700122]
          Length = 1150

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/317 (18%), Positives = 110/317 (34%), Gaps = 46/317 (14%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
           LGV  S + F +A       +  +V+ P +  A+   S    +    AV  F        
Sbjct: 31  LGVAASARPFIVAARYAMKPQSMLVIVPGEEGASAFASSLSAYIGDAAVARF-------- 82

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YGIGSVESYSQ 292
                P  + Y       N +   +R  A  +L      +VV+S + +   +   ++   
Sbjct: 83  -----PLREDYPFAPKKANAKTVALRTRAAWALASGEPVVVVASAASMVRRLPPSDAGVF 137

Query: 293 MIVQL---------KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
             ++L           G++++      +LV + ++        GTF V G ++++FP   
Sbjct: 138 APIELAPGREPVDPSTGEALDFAAFADALVARGFENAGELDGPGTFCVRGGTVDVFPG-T 196

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
                RV  FG++++ I    P TGQ I ++ +  I+    Y      +  A   +    
Sbjct: 197 GVFPVRVDFFGDEMDGIRRVVPGTGQSISSLASFSIFPVREYRLSSRAVKRASDAVAS-- 254

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
                        +       R  YD   L      +  +    +L  R       TL  
Sbjct: 255 -------RAATDPVW------RDLYDK--LGEGVDFEGADALLPHLYART-----DTLGA 294

Query: 464 YIPEDSLLFVDESHVTI 480
           Y+  D+L+ + E    I
Sbjct: 295 YVRPDALVVLSEPRSLI 311



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 72/193 (37%), Gaps = 22/193 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L+     + +     + ++ PP E R     V     + V D I    
Sbjct: 759 VLTLSATPIPRTLQMSLSGVRD----TSLILTPPDERRPVEVHVGEWDPDIVSDAIRREM 814

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
           Q+G ++       R  ED  +++ +     R    H ++   E   ++ D   G  DVLV
Sbjct: 815 QRGGQVYYVSNRVRTIEDALDHVRDAAPEARIGAAHGKMGKEELEAVMEDFAAGAIDVLV 874

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+D P    + I D+ + G  +    + Q  GR  R+       +       +
Sbjct: 875 ATTIIESGIDNPHTNTLVIEDSQRLGLAQ----MYQLKGRVGRSSLQAYAYFMFPSEVPL 930

Query: 698 QL-------AIDE 703
                    AIDE
Sbjct: 931 TEEATARLQAIDE 943



 Score = 45.5 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 77/203 (37%), Gaps = 14/203 (6%)

Query: 103 VQALARLIQSDNPLLKNGKIWTPHRSWSINN-HSKDI-TFFQMQTDYHPSGDQPAAIAQL 160
            +A  + +  D   +   +   P   +S +N   K++   F     Y  + DQ +AIA++
Sbjct: 565 ARASTKQLAFDLVDVYTRRSSVPGFRYSPDNPWQKEMEDAF----PYAETPDQLSAIAEV 620

Query: 161 LKGIH-SREKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
              +  SR   +L+ G  G GKT      A       +  +V+ P  ILA Q Y+ FK+ 
Sbjct: 621 KADMQSSRPMDRLVCGDVGFGKTEVALRAAFKAVQDDKQVMVLCPTTILAQQHYATFKDR 680

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
           F    V   V        E    + +T         + +       +R +  R+  +V+ 
Sbjct: 681 FEPFHVSVEVLSRFRTPAE----QKETLAGFADGTVDVLVGTHRLLSRDVNPRDLGLVII 736

Query: 277 SVSCIYGIGSVESYSQMIVQLKI 299
                +G+G  E    +   + +
Sbjct: 737 DEEQRFGVGHKEQLKNLREHIDV 759


>gi|218130501|ref|ZP_03459305.1| hypothetical protein BACEGG_02090 [Bacteroides eggerthii DSM 20697]
 gi|317474007|ref|ZP_07933286.1| transcription-repair coupling factor [Bacteroides eggerthii
           1_2_48FAA]
 gi|217987380|gb|EEC53710.1| hypothetical protein BACEGG_02090 [Bacteroides eggerthii DSM 20697]
 gi|316909849|gb|EFV31524.1| transcription-repair coupling factor [Bacteroides eggerthii
           1_2_48FAA]
          Length = 1128

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 81/216 (37%), Gaps = 16/216 (7%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           +     G+  S  +   + +I+ ++ P + +  +   A   Y +         V +F S 
Sbjct: 29  RHLYCSGLCASAASLFSSVLIQRVECPFVFILGDLEEAGYFYHDLTQILGTEQVLFFPSS 88

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGS 286
           +              Y +K+++     + +R      L +  +  C+V    +    + S
Sbjct: 89  FRRAIK---------YGQKDAAN----EILRTEVLSRLQKGEEGLCVVTYPDALAEKVVS 135

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
            +      ++L +G+ V+   +   L    ++  D     G + V G  I++F S   + 
Sbjct: 136 RKELGDKTLKLHLGEKVDMDFVTEVLRSYSFEYVDYVYEPGQYAVRGSIIDVF-SFSSEF 194

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
            +R+  FG+++E I  F   +       E I I  +
Sbjct: 195 PFRIDFFGDEVESIRTFEVESQLSKEKKENIVIVPD 230



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 74/191 (38%), Gaps = 16/191 (8%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+       P+  E+ +   ++  + D IN    +
Sbjct: 714 TLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNDEI--ITDAINFEMSR 771

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM---HSEVKTLERIEIIRDLRLGKFDVLVG 638
             ++           +L + + ERNI    +   H +++  E  +II D     +DVL+ 
Sbjct: 772 NGQVFFVNNRISNLVEL-KAMIERNIPDCRICIGHGQMEPAELEKIILDFVNYDYDVLLA 830

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DIP    + I  A   G     + L Q  GR  R+              S+ 
Sbjct: 831 TTIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLSSLT 886

Query: 699 LAIDETTRRRE 709
               E  RR +
Sbjct: 887 P---EAKRRLQ 894


>gi|83858282|ref|ZP_00951804.1| transcription-repair coupling factor [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853105|gb|EAP90957.1| transcription-repair coupling factor [Oceanicaulis alexandrii
           HTCC2633]
          Length = 1162

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/397 (15%), Positives = 131/397 (32%), Gaps = 59/397 (14%)

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-----DCIVVSSVSC-IYGIGSV 287
           P   +   D       S + +    R  A  +L +R+       +V+S+VS  I      
Sbjct: 64  PVLRLLGWDCQPYDRISPSPRTAARRAGALHALAQRDASDNSPLLVISTVSGVIQRCAPK 123

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
            + S   +  K G  ++ ++L   L +  Y R      RG + V G  I++FP+  E+  
Sbjct: 124 AALSGGGLSAKPGGVLDSEKLKQHLAENGYVRTATVTERGDYAVRGGVIDVFPADAEE-P 182

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG+ +E +  F P T +    ++++     S  V     ++            R 
Sbjct: 183 VRLDFFGDVLETVRAFDPETQRTTTQLKSVSFSPVSEIVLNADAISRF----------RS 232

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
             L+  G +     +   ++               E++          E   T+F+Y+ E
Sbjct: 233 GFLKNFGAVGSGDPIYDSVS-------AGARPTGAEHWLPLFH-----ERLDTVFDYVGE 280

Query: 468 DSLLFVDE-SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTI 526
            +L+ +D  +   + +     R  +  +   ++ G         R L         P ++
Sbjct: 281 GALVGLDPLAKDALDERLAQIRDYYEARQLASKSGAGAMGAPAYRALE--------PQSL 332

Query: 527 VVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEI-----RSA-------RTQVEDV 571
            +       E E           +        D  +++     RS        +   E  
Sbjct: 333 YL------DEDEWAVQLGQRATRRFTAFHEAGDDVIDMSGKQGRSFAAERQADQNVFEAA 386

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
                     G R+L    ++  ++ L   L +  ++
Sbjct: 387 SKHAVTLRSSGKRVLFASWSEGASDRLASVLSDHGLK 423



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + ++ATP    L+     I +  I  T  VD    +R+  T  + V   + +     +
Sbjct: 762 HVLTLTATPIPRTLQLSMAGIRDLSIIATPPVDRLA-VRTYVTPFDSVTVREALLRERYR 820

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +           ED+  +L E+   V ++  H ++   +  +I+     G++DVLV  
Sbjct: 821 GGQSYYVAPRISDLEDIASFLREQVPEVSFVIAHGQMAGGQLEDIMTAFYEGRYDVLVST 880

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  AD  G       L Q  GR  R   +K   YA   T + Q 
Sbjct: 881 TIVESGIDIPTANTMIIHRADMFGLAP----LYQLRGRVGR---AKARAYAYLTTPANQK 933

Query: 700 AIDETTRRREK 710
                 +R + 
Sbjct: 934 LTATADKRLKI 944



 Score = 38.5 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 54/178 (30%), Gaps = 5/178 (2%)

Query: 72  TASKGEFQSQSSISMSEKQTREISEQTMTP-SVQALARLIQSDNPLLKNGKIWTPHRSWS 130
                E  S+        Q   +          +A  RL    + L+K         +  
Sbjct: 535 PVENIELLSRYGQDSETAQLDRLGAGAWQARKAKAKQRLRDMADQLIKIAAARNARDAEI 594

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MA 186
           I   S     F  +  Y  + DQ  AI  +           +L+ G  G GKT      A
Sbjct: 595 ITPPSGLYDEFAARFPYVETDDQLNAIDDVFSDFAKGRPMDRLICGDVGFGKTEVALRAA 654

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
            V     R   ++AP  +LA Q +  F+  F    V+           EA   R +  
Sbjct: 655 FVAAMSGRQVAIVAPTTLLARQHFKTFEERFKGWPVKVRQLSRLVSTKEATATRKELA 712


>gi|189466485|ref|ZP_03015270.1| hypothetical protein BACINT_02860 [Bacteroides intestinalis DSM
           17393]
 gi|189434749|gb|EDV03734.1| hypothetical protein BACINT_02860 [Bacteroides intestinalis DSM
           17393]
          Length = 1131

 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 87/230 (37%), Gaps = 18/230 (7%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            AI+ LLK      +     G+  S  +   + +++  + P + +  +   A   Y +  
Sbjct: 18  EAISGLLK--DPSVRTLFCGGLCASAASLFSSVLVQRGEFPFVFILGDLEEAGYFYHDLT 75

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--C 272
                  V +F S +              Y +K+++     + +R      L +  +  C
Sbjct: 76  QILGTEKVLFFPSSFRRAIK---------YGQKDAAN----EILRTEVLSRLQKGEEGLC 122

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           +V    +    + S +      ++L  G++V+   +   L    ++  D     G + V 
Sbjct: 123 VVTYPDALAEKVVSRKELGDKTLKLHTGENVDTNFITEVLRSYGFEYVDYVYEPGQYAVR 182

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           G  I++F S   +  +R+  FG+++E I  F   T       ++I I  +
Sbjct: 183 GSIIDVF-SFSSEFPYRIDFFGDEVESIRTFEVETQLSKERKDSIVIVPD 231



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 71/196 (36%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+       P+  E+ +   +V  + D IN    +
Sbjct: 715 TLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNEEV--IVDAINFEMSR 772

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++ L         +L   +     + R+   H +++  E  +II       +DVL+  
Sbjct: 773 NGQVFLVNNRISNLPELKAMIERHIPDCRIAIGHGQMEPTELEKIIFGFVNYDYDVLIAT 832

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 833 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLSSL-- 886

Query: 700 AIDETTRRREKQLEHN 715
                  RR  Q   N
Sbjct: 887 ---TPEARRRLQAIEN 899


>gi|163736366|ref|ZP_02143785.1| transcription-repair coupling factor [Phaeobacter gallaeciensis
           BS107]
 gi|161390236|gb|EDQ14586.1| transcription-repair coupling factor [Phaeobacter gallaeciensis
           BS107]
          Length = 1155

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 111/335 (33%), Gaps = 34/335 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           ++     G         + K   +   P + +A +        +    F P   V  F  
Sbjct: 3   QRAITAGGAPEGFDARLILKEAASSDAPVVHVARDDKRMEATRAALAFFAPDMPVISFPG 62

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
           + D    +   P  D    + +++   + +M              ++ +  +    + + 
Sbjct: 63  W-DCLPYDRVSPNADIAAARMATLAALVHQM---------PGQFVLLTTLNAATQRVPAR 112

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           +         ++   ++++ L   L +  + +    +  G F V G  I+I+P   +   
Sbjct: 113 QVLKDAAFVAEVDRRIDEEALRGYLTRMGFTKSPTVMEPGDFAVRGGIIDIYPP-GQSGP 171

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+ +FG+ ++    F P T +    +  +++   S  +     +    +  + E     
Sbjct: 172 VRLDLFGDVLDGARRFDPATQRTTEKLSVVELAPVSEVILDEAAVTRFRQNYRIE----- 226

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                 G                E +      Q IE++  +       E   TLF+Y+P+
Sbjct: 227 --FGAAGTD----------DPLYEAVSAGRKYQGIEHWLPFFH-----ERLETLFDYLPQ 269

Query: 468 DSLLFVDE-SHVTIPQISGMYRGDFHRKATLAEYG 501
            ++   D+ +   + +   +      RK  +A+ G
Sbjct: 270 ATVTLDDQVTPARLARWDSIVDQYETRKIAMAQKG 304



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 9/175 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 745 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA-IRTYVSEFDAVTIREALLREHYR 803

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       D+  +L E+   + Y+  H ++   +  + +     GKFDVL+  
Sbjct: 804 GGQSFYVVPRITDLPDVEAFLQEQLPELSYVVAHGQLAAGDLDDRMNAFYDGKFDVLLAT 863

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+             
Sbjct: 864 TIVESGLDIPTANTMVVHRADMFGLAQ----LYQIRGRVGRSKTRAYAYLTTKPR 914



 Score = 42.8 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 12/124 (9%)

Query: 117 LKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLG 175
           L+   +  P      +   +    F     Y  + DQ  AI+++++ + S     +L+ G
Sbjct: 572 LRKAPMMDPP----PHAWEEFSARF----PYQETDDQLRAISEVMEDLQSGSPMDRLICG 623

Query: 176 VTGSGKTFTM--AKVIEAMQR-PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
             G GKT     A  I AM      ++AP  +LA Q  + F   F    +E         
Sbjct: 624 DVGFGKTEVAMRAAFIAAMSGVQVAIVAPTTLLARQHAAAFAQRFRGFPLEVRQLSRFVT 683

Query: 233 QPEA 236
             EA
Sbjct: 684 AKEA 687


>gi|165933497|ref|YP_001650286.1| transcription-repair coupling factor [Rickettsia rickettsii str.
           Iowa]
 gi|13235395|emb|CAC33672.1| Mfd protein [Rickettsia rickettsii]
 gi|165908584|gb|ABY72880.1| transcription-repair coupling factor [Rickettsia rickettsii str.
           Iowa]
          Length = 1122

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 123/373 (32%), Gaps = 56/373 (15%)

Query: 179 SGKTFT-MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           + K+F  +    + +++  I+ A N+  A QLY +   F  +  + YF            
Sbjct: 9   AAKSFFAIDNFTKNLKQDFILSASNEEEALQLYKQALFFSSNENIYYF------------ 56

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERN----DCIVVSSVSCIYGIGSVESYSQM 293
            P  +T     +S N  I   R      L   N      ++  + + +  +   + +S+ 
Sbjct: 57  -PSYNTIPYDHTSPNANILSRRAETLIKLTTNNSNSNKLLITHTANLLNKLPPKDFFSKY 115

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            ++L         EL   LV+  + R    I  G F V G+ I+I        A+R+   
Sbjct: 116 FLKLSPKMKFTTDELAMFLVENCFTRNASSIDAGEFAVRGEIIDII--LSGPKAYRIHFS 173

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
              IE I EF   T    ++   + I   +  V    T+                 L   
Sbjct: 174 WGYIESIKEFDIDTQISTKSCRELIISPANEIVLNSETIGNFKNN----------YLRNF 223

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFV 473
           G       L + +        +       E            +    L +Y+ +   +F 
Sbjct: 224 GVNHTDNALYKAVI-------SGRKFTGYEQLLPLFY-----DSCSNLIDYLNDPIFIFD 271

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN-CLRPTTIVVSATP 532
           + S   I +    Y   +              +  +   L+F  +   L PT++  +A+ 
Sbjct: 272 NLSKQAILEFEHSYNDFYS-------------ARSEANKLKFNSFYPTLSPTSLYFTASE 318

Query: 533 GSWELEQCQGIIV 545
            +  LEQ   I++
Sbjct: 319 ITELLEQNNNILL 331



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 9/178 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  T  ++   E+ ++    + V   D +     +
Sbjct: 732 HVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRL-EVHTSVMPFDPVIIRDALLREHFR 790

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G R    V   +  ED+ + L +    + Y   + ++   +  E++ +   GKFD+LV  
Sbjct: 791 GGRSFYVVPRIKDIEDIAKQLKQIVPELSYKIAYGKMTPSKIDEVMSEFYAGKFDILVST 850

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DI E   + I +AD  G  +    L Q  GR  R      +       K +
Sbjct: 851 TIIESGIDIAEANTMIIHNADMLGLSQ----LYQLRGRIGRGKMRGYVYLTVASHKKM 904


>gi|182414804|ref|YP_001819870.1| transcription-repair coupling factor [Opitutus terrae PB90-1]
 gi|177842018|gb|ACB76270.1| transcription-repair coupling factor [Opitutus terrae PB90-1]
          Length = 1205

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 99/244 (40%), Gaps = 22/244 (9%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           L G+T S +   + ++      P  ++    + AA+  +E   FF H A +   +     
Sbjct: 12  LTGITPSAQGAVLTELTLRHPAPVWIVVAADLKAAERLAEDAAFF-HGAAQLPHAQTTLV 70

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRM-RHSATRSL------------------LERNDCI 273
            PE+ +P      E  ++ N++   + +  ATRSL                        I
Sbjct: 71  FPES-MPDAGDMREAFAASNDRFTVLSKLRATRSLGVATSSEVGGARRRGGATALPPLVI 129

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V +  + +  + ++E ++     L  G +   + LL  L +  Y  + +    G + + G
Sbjct: 130 VTTPGALLQPVPALEEFATREFTLSRGQTQSFQGLLERLQQLDYDSEAVCEAPGHYAIRG 189

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+++P    +  +R+  FG++IE I EF P+T +    VE+I I A+S          
Sbjct: 190 GIIDVYPV-TANTPYRLDFFGDEIEAIREFDPVTQRSGATVESITISASSRVRLDPSKTG 248

Query: 394 TAMK 397
            A  
Sbjct: 249 IADY 252



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 11/164 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L     G     +I   PT        +++   ++  V D +    ++
Sbjct: 765 VLSMSATPIPRTLYLALTGARDLSVIETAPTNRHPIQTVVKTYDEKL--VIDAVRHELRR 822

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++            +   L E   ++ +   H +++  +  E++ +   G++ +LV  
Sbjct: 823 GGQVFYLHNRIETINLVAARLRELMPDVTIGVGHGQMEAADLEEVMTEFVAGRYQLLVCT 882

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            ++  GLDIP C  + I  AD+ G  +    L Q  GR  R  +
Sbjct: 883 TIIESGLDIPNCNTILIEGADRFGLSQ----LYQLRGRVGRFKH 922


>gi|298483734|ref|ZP_07001908.1| transcription-repair coupling factor [Bacteroides sp. D22]
 gi|298270151|gb|EFI11738.1| transcription-repair coupling factor [Bacteroides sp. D22]
          Length = 1141

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 92/248 (37%), Gaps = 20/248 (8%)

Query: 159 QLLKGIHSREKVQLLL--GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            ++K +     VQ +   G+  S  +   + +++    P + +  +   A   Y +    
Sbjct: 34  AVMKRLLKDTSVQTVFCGGLCASAASLFSSVLVQEGGCPFVFILGDLEEAGYFYHDLTQI 93

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND--CIV 274
                V +F S +          R+  Y +K+++     + +R      L +  +  CIV
Sbjct: 94  LGTEKVLFFPSSFR---------RSIKYGQKDAAN----EILRTEVLSRLQKGEEGLCIV 140

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
               +    + S +  S   ++L +G+ V+   +   L    ++  D     G + V G 
Sbjct: 141 TYPDALAEKVVSRKELSDKTLKLNVGEKVDTTFITDVLHSYGFEYVDYVYEPGQYAVRGS 200

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            I++F S   +  +R+  FG+++E I  F   +         + I              +
Sbjct: 201 IIDVF-SFASEYPYRIDFFGDEVESIRTFEVESQLSREKKSGVSIVP--DLAVTGDVTTS 257

Query: 395 AMKYIKEE 402
            + +I ++
Sbjct: 258 FLDFIPKD 265



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 16/196 (8%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +   +V  + D IN    +
Sbjct: 726 TLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFNEEV--ITDAINFEMSR 783

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++           +L   +     + RV   H +++  E  +II D     +DVL+  
Sbjct: 784 NGQVFFVNNRIANLPELKAMIERHIPDCRVAIGHGQMEPTELEKIILDFVNYDYDVLLAT 843

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 844 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLSSL-- 897

Query: 700 AIDETTRRREKQLEHN 715
               T  RR  Q   N
Sbjct: 898 ---TTEGRRRLQAIEN 910


>gi|294790717|ref|ZP_06755875.1| transcription-repair coupling factor [Scardovia inopinata F0304]
 gi|294458614|gb|EFG26967.1| transcription-repair coupling factor [Scardovia inopinata F0304]
          Length = 1227

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 82/223 (36%), Gaps = 7/223 (3%)

Query: 179 SGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY-FVSYYDYYQPEAY 237
           +GK     +      RP +++ P+   A    +  ++++  N  +   ++ ++    E  
Sbjct: 68  AGKAKQGKQAGRQPGRPVVLVVPSSRDAEDAVASIRSWYRGNPSDIDELAAWETLPHERL 127

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297
            PR DT   + S       R+ H    S L     I+V  V  +             +  
Sbjct: 128 SPRADTIARRMSVF----RRLAHPVAGSRLFSVLKILVVPVRSLIQPVVRGIQDVQPLVF 183

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
             G  ++ +     L++  Y R D+ + RG F V G  ++IFP        R+  FG++I
Sbjct: 184 ASGGQMDLEWAEKRLIENAYVRSDLVMDRGEFAVRGGILDIFPPTAA-HPVRIDFFGDEI 242

Query: 358 EEISEFYPLTGQKI-RNVETIKIYANSHYVTPRPTLNTAMKYI 399
           + I  F+    +   + ++ +   A             A   I
Sbjct: 243 DSIKAFHAADQRTFGQEIDQMWAPACRELQLTDAVRARAKALI 285



 Score = 44.7 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 13/199 (6%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QG 582
             + +SATP    LE     I E     T   D    + +     ED      +  +  +G
Sbjct: 817  VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP-VLTYVGAYEDAQVTAAIRRELLRG 875

Query: 583  LRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
             ++       +    +  ++++     R    H ++   +   +IRD      DVLV   
Sbjct: 876  GQVFYVHNRVQDISKVAAHIHDLVPEARIGTAHGKMGEKQLDAVIRDFWHRDIDVLVCTT 935

Query: 641  LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            ++  GLDI     + +  AD+ G  +    L Q  GR  R        +    +K++   
Sbjct: 936  IVETGLDISNANTLVVDRADRFGLSQ----LHQLRGRVGRGRERAYAYFLYDPSKTM--- 988

Query: 701  IDETTRRREKQLEHNKKHN 719
              +T   R + +  N    
Sbjct: 989  -TQTAHDRLETIAQNTALG 1006


>gi|71065641|ref|YP_264368.1| ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter arcticus
           273-4]
 gi|71038626|gb|AAZ18934.1| possible ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter
           arcticus 273-4]
          Length = 567

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 24/210 (11%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---ED------VYD 573
            TI+ SAT  G        G I     +    V   VE      +V   +D      + D
Sbjct: 223 QTIMCSATWDGP------VGKIAASFTKNPERVSIKVESAHIEEKVYYCDDFDHKNRLLD 276

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I        +I++   TKR  E L + L E   +  ++H ++   +R  I++DLR GK 
Sbjct: 277 KIVCHKDM-EQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKC 335

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLD+P    V   D       R     +  IGR  R   + V +   ++
Sbjct: 336 KILVATDVAARGLDVPALSHVINYD-----LPRQTEDYVHRIGRCGRAGRTGVAISLCSM 390

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
               Q  ++   R  ++++E +    + P+
Sbjct: 391 DDRPQ--LNAINRYLDRKMEASVIEGMEPK 418


>gi|78357082|ref|YP_388531.1| transcription-repair coupling factor [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219487|gb|ABB38836.1| transcription-repair coupling factor [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 1152

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 82/493 (16%), Positives = 157/493 (31%), Gaps = 65/493 (13%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             ++ K +       L +  +G      +AK +    R  +++A N    A+L +    F
Sbjct: 3   FEEIAKRLGGGAAHSLHVARSGPATRARLAKELIDQGRSVVLVARNADELAELRALATLF 62

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER--NDCIV 274
            P  + E          P               S        R ++  +L  R     ++
Sbjct: 63  SPDESSE----DVSLTVPAWERRWIIIPQHPAGSPGRTAWAARMASLYALNRRHMPQAVI 118

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           VS  + I  +     + +  + L  G+ +    ++   V+  Y R       G   + GD
Sbjct: 119 VSLDNFIPKLPPPSLFDKHQLVLSTGEDMSPGLVMEQAVEWGYTRTAYVTQPGEIALRGD 178

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++IFP        R+  FG+ +EEI  F P + +   N+  + +   +  V        
Sbjct: 179 ILDIFPPGYA-KPVRLDFFGDTLEEIRLFDPSSQRSKGNLAEVTLIPTAPVVLEGAPRAE 237

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A  +                         QR       L   G+  +++           
Sbjct: 238 ARSF------------------------WQRAAE--SGLLPDGAPAALD--------VAA 263

Query: 455 GEPPPTLF------E------YIPEDSLLFVDESHVTIPQISGMYR--GDFHRKATLAEY 500
           GE   TL       +      ++P D++  +         +    R   DF  +    EY
Sbjct: 264 GEARATLLPGVYYQDAVFLERWLPPDAVYILPAERDVAEALKQSARTWDDFSDQQER-EY 322

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           G   P+ M  R    E+   L   T+ V        +EQ    + E+       +    E
Sbjct: 323 GIHQPAAMTIR--EAEDVTALFGQTVRVYFEELVMGVEQKGENLPERGYEVFQDLFYEKE 380

Query: 561 I--RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
              R  +T +E + +      Q    +L     +  A+ L+  L +++    Y+  +  T
Sbjct: 381 QSDRPWQTLIEALKEWSRTRRQT---VLSFGSARSRAKFLS--LAQQDGISPYLRYDKST 435

Query: 619 LERIEIIRDLRLG 631
                ++   R G
Sbjct: 436 AGVFALVSAFRKG 448



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 14/196 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+     I E  +I        PV+        + + + +    Q+  
Sbjct: 761 VLTLTATPIPRTLQLSMSGIRELSVIETAPPERKPVKTALIDRDPDILREVLLRELQREG 820

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  E + EY+       R    H ++      E +      + DVLV   +
Sbjct: 821 QVFWVHNRVQGLERVAEYVRSLVPDARVGMAHGQMSEKALEETMHKFWHAELDVLVCTAI 880

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD P    + +  A   G  +    L Q  GR  R+      ++           +
Sbjct: 881 VESGLDFPRANTLVVDQAQMFGLGQ----LYQLRGRVGRSDRQAHAVFVVPDVD----GV 932

Query: 702 DETTRRREK---QLEH 714
            E  R+R K   ++++
Sbjct: 933 PELARKRLKIILEMDY 948


>gi|296118194|ref|ZP_06836775.1| transcription-repair coupling factor [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968752|gb|EFG81996.1| transcription-repair coupling factor [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 1223

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 117/338 (34%), Gaps = 44/338 (13%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +  L+  +   E    + G+    + + +  +  A   P +V+      A  L +E    
Sbjct: 15  LKGLVNNV--GEPQLHITGI-DQARPWAIGTL--AHHAPVLVVTATGREAEDLTAELTAM 69

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V +F ++ +    E   P  D    K + I  Q+++ R     +        ++ 
Sbjct: 70  MGQR-VGFFPAW-ETLPHERLSPGADIVG-KRAQILHQLEQGRLDVVVTAARGYAQPLLE 126

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           SV     I            L+     E +E++  L  + Y R D+   RG F V G  I
Sbjct: 127 SVVGRAPI-----------SLREEGEYELEEVVRDLEFRAYTRVDMVAKRGEFAVRGGII 175

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE--TIKIYANSHYVTPRPTLNT 394
           +IFP+ L D   RV  +G+++ +I +F     + I  +E  +++I+              
Sbjct: 176 DIFPTTL-DYPVRVEFWGDEVTDIRQFSIADQRTIPEIEVGSVEIFPARELPITEAIAQR 234

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A           +        +    ++ QR+             + +E     L+    
Sbjct: 235 AETL-------AVKHPGNAALVELLSKVSQRMA-----------SEGMEALLPVLSDAKM 276

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
                 L +++PE + + +        +I+ +   D  
Sbjct: 277 ----VPLTDFMPEGTHVVLVAPEKIRTRIADLESTDAE 310



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP +     T V   ED      +  + 
Sbjct: 789 VLTMSATPIPRTLEMSMAGIREM----STILTPPEDRHPVLTYVGAYEDKQVAAAIRREL 844

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +           E     + +     R +  H ++      + ++     ++DVLV
Sbjct: 845 LRDGQTFFIHNKVADIEKKAREIRDLVPEARVVVAHGQMNEELLEKTVQGFWDREYDVLV 904

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + + +A   G  +    L Q  GR  R+       +        
Sbjct: 905 CTTIVETGLDISNANTLIVENAHHMGLSQ----LHQLRGRVGRSRERGYAYFLYPKG--- 957

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET+  R   +  N    
Sbjct: 958 -ATLTETSYDRLATIAQNNDLG 978



 Score = 40.8 bits (94), Expect = 0.99,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 12/143 (8%)

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL-- 587
           A     E  + Q  +   I+   G     V +R+A   V+D          + + +L+  
Sbjct: 646 AIDAVKEDMESQVPMDRVIVGDVGYGKTEVAVRAAFKAVQD---------GKQVAVLVPT 696

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           T+L ++  +   E +    + +R +     T E  EII+ L  G+ DV++G + LL+ G+
Sbjct: 697 TLLAQQHYDTFVERMGGFPLEIRVLSRFTSTKESKEIIKQLATGEIDVVIGTHRLLQTGV 756

Query: 647 DIPECGLVAILDADKEGFLRSKT 669
                GL+ + +  + G    + 
Sbjct: 757 HWKSLGLIIVDEEQRFGVEHKEH 779


>gi|254453067|ref|ZP_05066504.1| transcription-repair coupling factor [Octadecabacter antarcticus
           238]
 gi|198267473|gb|EDY91743.1| transcription-repair coupling factor [Octadecabacter antarcticus
           238]
          Length = 1154

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 101/326 (30%), Gaps = 32/326 (9%)

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           K  T++   E      I+          +  + K      A   F +      P    P 
Sbjct: 13  KHVTISGAPEGFDARLILAEAESGAVVHICRDDKRVEAMRAALAFFAPDM---PVLIFPS 69

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLER---NDCIVVSSVSCIYGIGSVESYSQMIVQL 297
            D       S N  +   R +    L         ++ +  +    + +     +     
Sbjct: 70  WDCLPYDRVSPNADVSAARMAVLAGLAHGMPERFVLLTTLNAATQKVPARSVLREAAFSA 129

Query: 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDI 357
            +G  +++  L + LV+  + +    +  G + V G  I+I+P   +    R+ +FG+D+
Sbjct: 130 SVGSRIDEAALRAFLVRMGFTQAPTVMEPGDYAVRGGIIDIYPP-GQIGPVRLDLFGDDL 188

Query: 358 EEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLL 417
           E    F P T +    ++ + +   S  +     +    +  + E           G   
Sbjct: 189 EGARRFDPATQRTTETLDVVDLAPVSEVILDDAAITRFRQNYRLE-------FGAAGTD- 240

Query: 418 EAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESH 477
                        E +        +E++  +           TLF+Y+   + + +DE +
Sbjct: 241 ---------DPLYEAVSAGKKHAGVEHWLAFFHAELE-----TLFDYLT-GATVTLDEQN 285

Query: 478 VTIPQISGMYRGDF--HRKATLAEYG 501
                   +   D    R+  +   G
Sbjct: 286 AAQRDARWVSIDDQYDARREAMLAKG 311



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 74/188 (39%), Gaps = 12/188 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + E  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 752 HVLTLTATPIPRTLQLSLSGVRELSIIGTPPVDRLA-IRTYVSEFDTVTIREALLREHYR 810

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++  ++ +    V ++    ++   E  + +     GK+DVL+  
Sbjct: 811 GGQSFFVVPRISDLPEIEAFIRDEVPEVSFVIASGQMAAGELDDRMNAFYDGKYDVLLAT 870

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK   YA    K  Q 
Sbjct: 871 TIVESGLDIPTANTMIVHRADMFGLAQ----LYQIRGRVGR---SKARAYAYLTYKPRQK 923

Query: 700 AIDETTRR 707
              +  +R
Sbjct: 924 LTPQAEKR 931


>gi|83269545|ref|YP_418836.1| transcription repair coupling factor [Brucella melitensis biovar
           Abortus 2308]
 gi|82939819|emb|CAJ12827.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
           motif A (P-loop):Haem peroxidase:Transcription-repair
           coupli [Brucella melitensis biovar Abortus 2308]
          Length = 1122

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/412 (14%), Positives = 135/412 (32%), Gaps = 61/412 (14%)

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
               I+ +S + +  +    +  + ++  + G+ ++  +L + L +  ++R       G 
Sbjct: 65  HPAVILTTSNAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTVRDIGE 124

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           + V G  ++++    E+   R+  FG+ +E I  F P + +     +   +   S     
Sbjct: 125 YAVRGGILDLYAPGAEE-PLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMSEITLS 183

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
              ++            R   +   G         QR     + +        +E++   
Sbjct: 184 SDMISRF----------RKNYVAMFGAP-------QRDDALYQAISEGRRFAGMEHWLPL 226

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
                      T+F++      + V   H+    ++  +                  +  
Sbjct: 227 FYDNLE-----TVFDH---AGPMPVVFDHLVHEALTERHTMVVDHYEARLRQAEGKEAGS 278

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD------------ 556
           D  P +      ++P  + +  TPG  E E  +   +   + P G  +            
Sbjct: 279 DAVPYKP-----VKPEMLYL--TPGQVE-EAAEAAGLRIDLTPFGAPEVSGRTIIHADVH 330

Query: 557 ---PPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
                 E R+A      E V   I      G ++L+   T+   + L + L E  +    
Sbjct: 331 KGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEGSLDRLCQVLDEHGLE--- 387

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
              +++T++R+  ++ L   K    V   +L          LV + + D  G
Sbjct: 388 ---KIETVDRLSTVKALSRDK----VTAAVLAVESGFDAGDLVVVAEQDILG 432



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 35/260 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 727 HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPLVIRETLLRERYR 785

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       D+ E+L E    ++V   H ++      +I+     G++DVL+  
Sbjct: 786 GGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 845

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 846 TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 898

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
            + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 899 -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 939

Query: 760 GKAHLK----SLRKQMHLAA 775
              H+K     L +QM   A
Sbjct: 940 QSGHIKEVGFELYQQMLEEA 959


>gi|113475354|ref|YP_721415.1| transcription-repair coupling factor [Trichodesmium erythraeum
           IMS101]
 gi|110166402|gb|ABG50942.1| transcription-repair coupling factor [Trichodesmium erythraeum
           IMS101]
          Length = 1180

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/323 (13%), Positives = 106/323 (32%), Gaps = 42/323 (13%)

Query: 160 LLKGIHSREKVQLLLGVTGSG---KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           L   + ++ +    LG+ G+    K    + + +  ++  +++      A +   + +  
Sbjct: 15  LTTELLNKLQQYQCLGLNGASRLPKGLLTSTLAQQQEQNLLIVTATLEEAGRWAVQLEAI 74

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR---MRHSATRSLLERNDCI 273
                  Y  S    Y+P       +    +   + + I        ++  +   +    
Sbjct: 75  GWPKVHFYPTSEAFPYEPSN---SEEMIWGQMQVLADLISENVPENVTSNGNSSNKAKMA 131

Query: 274 VVSSVSCIYG-IGSVESYSQMIVQL-------------------------KIGDSVEQKE 307
           VV++   +   + +V+ +    + L                            DS+E+  
Sbjct: 132 VVATERSLQPHLPTVKKFQPYCLTLMASIASSSKTLGSTKISNTDIEINHSESDSLERPS 191

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           L   LV+  Y+   +    G +   GD I++FP    ++  R+  FG+++ +I EF P T
Sbjct: 192 LEEKLVQMGYELVPLVETEGQWSRRGDIIDVFPV-ASELPVRLEWFGDELRQIREFDPST 250

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ------R 421
            + +  +  I +            L +        L   L E          Q      R
Sbjct: 251 QRSLDKIAQIVLTPRDFSQWALGNLESITDSTFVSLLDYLPENTLIAIDEPDQCAAHGDR 310

Query: 422 LEQRITYDLEMLETTGSCQSIEN 444
             + +  + + L+ + +   I  
Sbjct: 311 WFELVEENWQQLKRSQALPKIHR 333



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 74/191 (38%), Gaps = 5/191 (2%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      I E  +I     +  P++   A   +E     I     +G 
Sbjct: 772 VLTLTATPIPRTLYMALSGIREMSVITTPPPLRRPIKTHLAPYDLETARTAIRQELNRGG 831

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++   V      E+L   L E     R+   H ++   E   I+     G+ D+LV   +
Sbjct: 832 QVFYVVPRIEGIEELAGKLREMIPGARINIGHGKMDAAELESIMLTFSAGEADILVCTTI 891

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + I DA K G L     L   +GRA    ++ +  Y  T +  I L  
Sbjct: 892 IESGLDIPRVNTILIEDAQKFG-LSQLYQLRGRVGRAGVQAHAWLF-YPTTSSGGIALTD 949

Query: 702 DETTRRREKQL 712
           D   R R  Q 
Sbjct: 950 DAQKRLRAIQE 960


>gi|255349143|ref|ZP_05381150.1| transcription-repair coupling factor [Chlamydia trachomatis 70]
 gi|255503680|ref|ZP_05382070.1| transcription-repair coupling factor [Chlamydia trachomatis 70s]
 gi|255507360|ref|ZP_05382999.1| transcription-repair coupling factor [Chlamydia trachomatis
           D(s)2923]
 gi|289525792|emb|CBJ15273.1| transcription-repair coupling factor [Chlamydia trachomatis
           Sweden2]
 gi|296435368|gb|ADH17546.1| transcription-repair coupling factor [Chlamydia trachomatis E/150]
 gi|296439085|gb|ADH21238.1| transcription-repair coupling factor [Chlamydia trachomatis
           E/11023]
          Length = 1079

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 87/238 (36%), Gaps = 15/238 (6%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +   +   L+  +    ++F +AK+ + ++R  +V+         L+ +       + +E
Sbjct: 16  LKDTKLPSLVENLHSGARSFVIAKLFKELKRSIVVIT-TPAKLDDLFEDLTTLLAESPLE 74

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
           +  S  D       V      + K   I   + +                V +  + +  
Sbjct: 75  FPASEIDLSPKLVNVDA----VGKRDHILYSLQKQSAPVIC---------VTTLKALLER 121

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
             S ES  +  ++L++G+ ++   LL       Y+ + +   +G F   G  ++IFP   
Sbjct: 122 TPSPESMIRDHLELRVGEELDPDTLLDLCKSLGYRHEALAREKGDFAFRGGIVDIFPLSS 181

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
            +  +R+  +G+ +  I  + P        +  I I   +  +      ++ + Y K 
Sbjct: 182 PE-PFRIEFWGDRVSSIRSYNPSDQLSTGKLSQITISPATAIIPTDKLSHSLLDYFKA 238



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 65/190 (34%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + VSATP    L     G     +I    L   PV         E +   I     +G 
Sbjct: 708 CLTVSATPIPRTLYLSLSGARDLSLITMPPLDRLPVSTFVMEHSEETLSAAIRHELLRGG 767

Query: 584 RILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++ +         R+ E +   + E  I V   H ++   E   I    +  K +VLV  
Sbjct: 768 QVYVIHNRIESIFRLGETIRTLIPEARIGVA--HGQMHADELASIFYKFKTQKTNVLVAT 825

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            L+  G+DIP    + I  ADK G       L Q  GR  R        +       +  
Sbjct: 826 ALIENGIDIPNANTILIDHADKFG----MADLYQMKGRVGRWNKKAYCYFLVPHLDRLS- 880

Query: 700 AIDETTRRRE 709
               T++R E
Sbjct: 881 --GPTSKRLE 888



 Score = 45.5 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 15/132 (11%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           +++RE+SE ++    + L ++    +             S+    H +++  F     Y 
Sbjct: 507 RRSRELSENSVILYAEKLIQMEAQRST----------ANSFIYPPHGEEVIKFAESFPYE 556

Query: 149 PSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ  AI Q+    +  +   +L+ G  G GKT   M   ++A+    +  IVM P  
Sbjct: 557 ETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAVCDGHKQVIVMVPTT 616

Query: 204 ILAAQLYSEFKN 215
           ILA Q +  F  
Sbjct: 617 ILANQHFETFSQ 628


>gi|23500323|ref|NP_699763.1| transcription-repair coupling factor [Brucella suis 1330]
 gi|23463936|gb|AAN33768.1| transcription-repair coupling factor [Brucella suis 1330]
          Length = 1122

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/412 (14%), Positives = 135/412 (32%), Gaps = 61/412 (14%)

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
               I+ ++ + +  +    +  + ++  + G+ ++  +L + L +  ++R       G 
Sbjct: 65  HPAVILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTVRDIGE 124

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           + V G  ++++    E+   R+  FG+ +E I  F P + +     +   +   S     
Sbjct: 125 YAVRGGILDLYAPGAEE-PLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMSEITLS 183

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
              ++            R   +   G         QR     + +        +E++   
Sbjct: 184 SDMISRF----------RKNYVATFGAP-------QRDDALYQAISEGRRFAGMEHWLPL 226

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
                      T+F++      + V   H+    ++  +                  +  
Sbjct: 227 FYDNLE-----TVFDH---AGPMPVVFDHLVHEALTERHTMVVDHYEARLRQAEGKEAGS 278

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD------------ 556
           D  P +      ++P  + +  TPG  E E  +   +   + P G  +            
Sbjct: 279 DAVPYKP-----VKPEMLYL--TPGQVE-EAAEAAGLRIDLTPFGAPEVSGRTIIHADVH 330

Query: 557 ---PPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
                 E R+A      E V   I      G ++L+   T+   + L + L E  +    
Sbjct: 331 KGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEGSLDRLCQVLDEHGLE--- 387

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
              +++T++R+  ++ L   K    V   +L          LV + + D  G
Sbjct: 388 ---KIETVDRLSTVKALSRDK----VTAAVLAVESGFDAGDLVVVAEQDILG 432



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 35/260 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 727 HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPLVIRETLLRERYR 785

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       D+ E+L E    ++V   H ++      +I+     G++DVL+  
Sbjct: 786 GGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 845

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 846 TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 898

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
            + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 899 -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 939

Query: 760 GKAHLK----SLRKQMHLAA 775
              H+K     L +QM   A
Sbjct: 940 QSGHIKEVGFELYQQMLEEA 959


>gi|166154090|ref|YP_001654208.1| transcription-repair coupling factor [Chlamydia trachomatis 434/Bu]
 gi|301335295|ref|ZP_07223539.1| transcription-repair coupling factor [Chlamydia trachomatis L2tet1]
 gi|165930078|emb|CAP03561.1| transcription-repair coupling factor [Chlamydia trachomatis 434/Bu]
          Length = 1079

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 86/238 (36%), Gaps = 15/238 (6%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +   +   L+  +    ++F +AK+ + ++R  +V+         L+ +       + +E
Sbjct: 16  LKDTKLPSLVENLHSGARSFVIAKLFKELKRSIVVIT-TPAKLDDLFEDLTTLLAESPLE 74

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
           +  S  D       V      + K   I   + +                V +  + +  
Sbjct: 75  FPASEIDLSPKLVNVDA----VGKRDHILYSLQKQSAPVIC---------VTTLKALLER 121

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
             S ES  +  ++L++G+ ++   LL       Y+ + +   +G F   G  ++IFP   
Sbjct: 122 TPSPESMIRDHLELRVGEELDPDTLLDLCKSLGYRHEALAREKGDFAFRGGIVDIFPLSS 181

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
            +  +R+  +G+ +  I  + P        +  I I   +  +       + + Y K 
Sbjct: 182 PE-PFRIEFWGDRVSSIRSYNPSDQLSTGKLSQITISPATAIIPTDKLSYSLLDYFKA 238



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 65/190 (34%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + VSATP    L     G     +I    L   PV         E +   I     +G 
Sbjct: 708 CLTVSATPIPRTLYLSLSGARDLSLITMPPLDRLPVSTFVMEHSEETLSAAIRHELLRGG 767

Query: 584 RILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++ +         R+ E +   + E  I V   H ++   E   I    +  + +VLV  
Sbjct: 768 QVYVIHNRIESIFRLGETIRTLIPEARIGVA--HGQMHADELASIFYKFKTQQTNVLVAT 825

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            L+  G+DIP    + I  ADK G       L Q  GR  R        +       +  
Sbjct: 826 ALIENGIDIPNANTILIDHADKFG----MADLYQMKGRVGRWNKKAYCYFLVPHLDRLS- 880

Query: 700 AIDETTRRRE 709
               T++R E
Sbjct: 881 --GPTSKRLE 888



 Score = 45.5 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 15/132 (11%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           +++RE+SE ++    + L ++    +             S+    H +++  F     Y 
Sbjct: 507 RRSRELSENSVILYAEKLIQMEAQRST----------ANSFIYPPHGEEVIKFAESFPYE 556

Query: 149 PSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ  AI Q+    +  +   +L+ G  G GKT   M   ++A+    +  IVM P  
Sbjct: 557 ETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAVCDGHKQVIVMVPTT 616

Query: 204 ILAAQLYSEFKN 215
           ILA Q +  F  
Sbjct: 617 ILANQHFETFSQ 628


>gi|166154965|ref|YP_001653220.1| transcription-repair coupling factor [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|165930953|emb|CAP06515.1| transcription-repair coupling factor [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 1079

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 86/238 (36%), Gaps = 15/238 (6%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +   +   L+  +    ++F +AK+ + ++R  +V+         L+ +       + +E
Sbjct: 16  LKDTKLPSLVENLHSGARSFVIAKLFKELKRSIVVIT-TPAKLDDLFEDLTTLLAESPLE 74

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
           +  S  D       V      + K   I   + +                V +  + +  
Sbjct: 75  FPASEIDLSPKLVNVDA----VGKRDHILYSLQKQSAPVIC---------VTTLKALLER 121

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
             S ES  +  ++L++G+ ++   LL       Y+ + +   +G F   G  ++IFP   
Sbjct: 122 TPSPESMIRDHLELRVGEELDPDTLLDLCKSLGYRHEALAREKGDFAFRGGIVDIFPLSS 181

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
            +  +R+  +G+ +  I  + P        +  I I   +  +       + + Y K 
Sbjct: 182 PE-PFRIEFWGDRVSSIRSYNPSDQLSTGKLSQITISPVTAIIPTDKLSYSLLDYFKA 238



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 65/190 (34%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + VSATP    L     G     +I    L   PV         E +   I     +G 
Sbjct: 708 CLTVSATPIPRTLYLSLSGARDLSLITMPPLDRLPVSTFVMEHSEETLSAAIRHELLRGG 767

Query: 584 RILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++ +         R+ E +   + E  I V   H ++   E   I    +  + +VLV  
Sbjct: 768 QVYVIHNRIESIFRLGETIRTLIPEARIGVA--HGQMHADELASIFYKFKTQQTNVLVAT 825

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            L+  G+DIP    + I  ADK G       L Q  GR  R        +       +  
Sbjct: 826 ALIENGIDIPNANTILIDHADKFG----MADLYQMKGRVGRWNKKAYCYFLVPHLDRLS- 880

Query: 700 AIDETTRRRE 709
               T++R E
Sbjct: 881 --GPTSKRLE 888



 Score = 45.5 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 15/132 (11%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           +++RE+SE ++    + L ++    +             S+    H +++  F     Y 
Sbjct: 507 RRSRELSENSVILYAEKLIQMEAQRST----------ANSFIYPPHGEEVIKFAESFPYE 556

Query: 149 PSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ  AI Q+    +  +   +L+ G  G GKT   M   ++A+    +  IVM P  
Sbjct: 557 ETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAVCDGHKQVIVMVPTT 616

Query: 204 ILAAQLYSEFKN 215
           ILA Q +  F  
Sbjct: 617 ILANQHFETFSQ 628


>gi|256015355|ref|YP_003105364.1| transcription-repair coupling factor [Brucella microti CCM 4915]
 gi|255998015|gb|ACU49702.1| transcription-repair coupling factor [Brucella microti CCM 4915]
          Length = 1122

 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 58/412 (14%), Positives = 135/412 (32%), Gaps = 61/412 (14%)

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
               I+ ++ + +  +    +  + ++  + G+ ++  +L + L +  ++R       G 
Sbjct: 65  HPAVILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTVRDIGE 124

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           + V G  ++++    E+   R+  FG+ +E I  F P + +     +   +   S     
Sbjct: 125 YAVRGGILDLYAPGAEE-PLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMSEITLS 183

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
              ++            R   +   G         QR     + +        +E++   
Sbjct: 184 SDMISRF----------RKNYVAMFGAP-------QRDDALYQAISEGRRFAGMEHWLPL 226

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM 508
                      T+F++      + V   H+    ++  +                  +  
Sbjct: 227 FYDNLE-----TVFDH---AGPMPVVFDHLVHEALTERHTMVVDHYEARLRQAEGKEAGS 278

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD------------ 556
           D  P +      ++P  + +  TPG  E E  +   +   + P G  +            
Sbjct: 279 DAVPYKP-----VKPEMLYL--TPGQVE-EAAEAAGLRIDLTPFGAPEVSGRTIIHADVH 330

Query: 557 ---PPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
                 E R+A      E V   I      G ++L+   T+   + L + L E  +    
Sbjct: 331 KGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEGSLDRLCQVLDEHGLE--- 387

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
              +++T++R+  ++ L   K    V   +L          LV + + D  G
Sbjct: 388 ---KIETVDRLSTVKALSRDK----VTAAVLAVESGFDAGDLVVVAEQDILG 432



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 35/260 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 727 HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPLVIRETLLRERYR 785

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       D+ E+L E    ++V   H ++      +I+     G++DVL+  
Sbjct: 786 GGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 845

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 846 TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 898

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
            + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 899 -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 939

Query: 760 GKAHLK----SLRKQMHLAA 775
              H+K     L +QM   A
Sbjct: 940 QSGHIKEVGFELYQQMLEEA 959


>gi|167041981|gb|ABZ06718.1| putative TRCF domain protein [uncultured marine microorganism
           HF4000_141E02]
          Length = 1150

 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 85/514 (16%), Positives = 173/514 (33%), Gaps = 79/514 (15%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +A+ I+      IV+AP    A  L +E           YF       +  
Sbjct: 25  LYGSSINLALAERIKNDLDFKIVIAPEINSAEILCNEIN---------YFSETGLSIE-- 73

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMI 294
             +P  +      SS + Q+   R      LL+ N D +V+++ S ++ +   + + +  
Sbjct: 74  -LLPDLEILPYDVSSPSNQVIASRSEILFQLLKGNIDVLVLNASSLLWKLPPRKYFEKES 132

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMF 353
             L +G+    +++   L    Y+R    I  G F + G  I++F P +      R+   
Sbjct: 133 FTLSVGELFSMQQIGEKLRINGYERVSTVIKPGEFCIRGSLIDLFSPLYTN--PIRIDFD 190

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
              I+ I  F   +   +  + ++ I  + HY    P  + A  + K  ++         
Sbjct: 191 DEKIDLIKLFDVDSQLTLNTINSVTIIPSEHY----PKSSLAFDFFKTNMRNAFD----- 241

Query: 414 GRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLL-F 472
           G  LE              +ET      + NY          E   ++++Y    + L  
Sbjct: 242 GNQLEW--------PLYNFIETYAESHGVYNYLPLFF-----ESMSSIWDYCKPGTELFC 288

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           V +    I     +    F+ +  L++     P               L+P+ +  SAT 
Sbjct: 289 VGDIKTPIKDYQKLINQRFNSQDNLSQ-----P--------------NLKPSELFFSATE 329

Query: 533 GSWELEQCQGIIV--EQIIRPTGLVDPPVEIRSAR-------TQVEDVYDEINLAAQQGL 583
              ++ +   I +  ++  +         + R          + ++ +   +   +    
Sbjct: 330 QINKINEMHPINLQHQKCWKSHDHNSINFDTRPLEPLTAFKTSSMDKIIHGLLETSTN-- 387

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +ILL+  +K     +   L E +I  R          R+    +    +  V V    + 
Sbjct: 388 KILLSAGSKNRIAFIENQLREFSIASR----------RVSNWNEFLERRAGVFVTEKSIS 437

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
           E     + G+  I + +  G   S        G+
Sbjct: 438 ESFITAKSGIAVIGEIELFGRRSSTRKYRSPAGK 471



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 97/255 (38%), Gaps = 21/255 (8%)

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQGL 583
           + ++ATP    L    G + +  +  T   +  + +++  +Q +   +++       +G 
Sbjct: 758 LALTATPIPRTLNMAIGELKDISMIAT-PPEGRIPVKTYISQWDKSLIHEACQREISRGG 816

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM---HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           ++L         E++ E + +  I V  +   H  +K      ++      +FD+L+  +
Sbjct: 817 QVLFVHNRIDDIENMAETIRQI-IPVGSLEIAHGRMKERSLERVMMKFYNNEFDILLATS 875

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  GLDIP    + I  AD+ G  +    L Q  GR  R+       YA  +  S    
Sbjct: 876 IIESGLDIPNANTIIINRADRFGLAQ----LHQLRGRVGRSERQ---SYAYLMIPSKHTL 928

Query: 701 IDETTRRRE-KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
            +E  +R E  +   +        +   +I    + +  E +      I     SL K  
Sbjct: 929 TNEGRQRLEAIEAIEDLGVGFILATHDLEIRGAGEILGDEQSGQ----IQKIGFSLYKDM 984

Query: 760 GKAHLKSLRK--QMH 772
               + SLR   QM 
Sbjct: 985 LAQAIDSLRDGPQMQ 999


>gi|254440320|ref|ZP_05053814.1| transcription-repair coupling factor [Octadecabacter antarcticus
           307]
 gi|198255766|gb|EDY80080.1| transcription-repair coupling factor [Octadecabacter antarcticus
           307]
          Length = 1177

 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 102/338 (30%), Gaps = 44/338 (13%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K   + G         +  + EA     + +  +      + +    F P   V  F   
Sbjct: 24  KHVTVSGAPEGFDARLI--LAEAADGAVVHICRDDKRVEAMRAALAFFAPEMPVVVF--- 78

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER---NDCIVVSSVSCIYGIG 285
                     P  D       S N  +   R +    L         ++ +  +    + 
Sbjct: 79  ----------PSWDCLPYDRVSPNADVSAARMAVLAGLAHGMPERFVLLTTLNAATQKVP 128

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +     +     ++G  +++  L   LV+  + +       G + V G  I+I+P   + 
Sbjct: 129 ARSVLREAAFSARVGSRIDESALRKFLVRMGFTQSPTVTEPGDYAVRGGIIDIYPP-GQV 187

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
              R+ +FG+D+E    F P T +    +  +++   S  +     +    +  + E   
Sbjct: 188 GPVRLDLFGDDLEGARRFDPATQRTTETLHVVELAPVSEVILDDAAITRFRQNYRLE--- 244

Query: 406 RLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
                   G                E +        +E++  +           TLF+Y+
Sbjct: 245 ----FGAAGTD----------DPLYEAVSAGKKHAGVEHWMGFFHAELE-----TLFDYL 285

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDF--HRKATLAEYG 501
              + + +DE +        +   D    R+  +   G
Sbjct: 286 T-GATVTLDEQNAAQRDARWVSIDDQYDARREAMLAKG 322



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 74/188 (39%), Gaps = 12/188 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L+     + E  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 775 HVLTLTATPIPRTLQLSLSGVRELSIIGTPPVDRLA-IRTYVSEFDTVTIREALLREHYR 833

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++  ++ +    V ++    ++   E  + +     GK+DVL+  
Sbjct: 834 GGQSFFVVPRVSDLSEIEAFIRDEIPEVSFVTASGQMAAGELDDRMNAFYDGKYDVLLAT 893

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK   YA    K  Q 
Sbjct: 894 TIVESGLDIPTANTMIVHRADMFGLAQ----LYQIRGRVGR---SKARAYAYLTYKPRQK 946

Query: 700 AIDETTRR 707
              +  +R
Sbjct: 947 LTPQAEKR 954


>gi|254475764|ref|ZP_05089150.1| transcription-repair coupling factor [Ruegeria sp. R11]
 gi|214030007|gb|EEB70842.1| transcription-repair coupling factor [Ruegeria sp. R11]
          Length = 1153

 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 109/328 (33%), Gaps = 34/328 (10%)

Query: 175 GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
           G         + K +     P + +A +      + +    F P   V  F  + D    
Sbjct: 10  GAPEGFDAKLILKELAKSGGPVVHVARDDKRMEAMRAALAFFAPDMPVISFPGW-DCLPY 68

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
           +   P  D    + +++   + +M              ++ +  +    + + +      
Sbjct: 69  DRVSPNADIAAARMATLAALVHQM---------PGQFVLLTTLNAATQRVPARQVLRDAA 119

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
              ++   +++  L + L +  + +    +  G F V G  I+IFP        R+ +FG
Sbjct: 120 FTAQVDHRIDEGALRNYLTRMGFTKSPTVMEPGDFAVRGGIIDIFPPGQAG-PVRLDLFG 178

Query: 355 NDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEG 414
           + ++    F P T +    ++ I++   S  +     +    +  + E           G
Sbjct: 179 DVLDGARRFDPATQRTTEKLDLIELAPVSEVILDEAAITRFRQNYRIE-------FGAAG 231

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
                           E +      Q +E++  +       E   TLF+Y+P  ++   D
Sbjct: 232 TD----------DPLYEAVSAGRKYQGLEHWLPFFH-----EELETLFDYLPGATVTLDD 276

Query: 475 E-SHVTIPQISGMYRGDFHRKATLAEYG 501
           + +   + +   +      RK  +A+ G
Sbjct: 277 QVTPARLARWDSITDQYETRKIAMAQKG 304



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 69/178 (38%), Gaps = 9/178 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 745 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA-IRTYVSEFDAVTIREALLREHYR 803

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++  +L E+   + Y+  H ++   +  E +     GK+DVL+  
Sbjct: 804 GGQSFYVVPRITDLPEIEAFLQEQLPELSYVVAHGQLAAGDLDERMNAFYDGKYDVLLAT 863

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+               +
Sbjct: 864 TIVESGLDIPTANTMVVHRADMFGLAQ----LYQIRGRVGRSKTRAYAYLTTKPRVRL 917



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 12/124 (9%)

Query: 117 LKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLG 175
           L+   +  P      +   +    F     Y  + DQ  AI +++  ++S     +L+ G
Sbjct: 572 LRKAPMMDPP----PHAWEEFSARF----PYQETDDQLRAIGEVMADLNSGMPMDRLICG 623

Query: 176 VTGSGKTFT---MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
             G GKT      A V         V+AP  +LA Q  + F   F    +E         
Sbjct: 624 DVGFGKTEVAMRAAFVAAMSGVQVAVVAPTTLLARQHAAGFAQRFRGFPLEVRQLSRFVT 683

Query: 233 QPEA 236
             EA
Sbjct: 684 AKEA 687


>gi|206603476|gb|EDZ39956.1| Transcription-repair coupling factor [Leptospirillum sp. Group II
           '5-way CG']
          Length = 1154

 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 64/453 (14%)

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YG 283
           F S++       ++P  +    +  S  + I   R  A   L +    +VV++   +   
Sbjct: 74  FQSFFGSNLSICFLPEEEVLPYEPESPPDFIRAERIHALNLLAQGKVDVVVTTWPAVVRK 133

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSH 342
                  S++   L  G+ +E+  L  SLV+  + R       G F V G  ++++ P+H
Sbjct: 134 TLPPRLLSEVTWTLSAGEFIERTALADSLVRLGFLRVLQVSAPGEFAVRGAILDLYSPAH 193

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEE 402
            +    R+    + +  I  F     + +  +  ++I   S ++ P   +          
Sbjct: 194 QD--PVRLEWDDDILASIRSFDINNQKSLAKLSRVEILPGSEWIPPTGNVKNG------A 245

Query: 403 LKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF 462
           L   L +      +   +R    I  D +              S    GR P        
Sbjct: 246 LSDWLKDNPVTSLVPGVERFIPSIYEDAQ--------------SPLDYGRKP-------- 283

Query: 463 EYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR-LPSCMDNRPLRFEEWNCL 521
                  +L ++E  +   +              L +     LPS     P +   +   
Sbjct: 284 -------VLLIEEPSIYRQKKKEWEERIREGWEALTDSDKVLLPS-----PEKAFLFEEA 331

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
               ++    P  +  +      +            PVE   +  Q+ED + E       
Sbjct: 332 ESPQLIEKLYPTIYLSDFSDQEDLP--------FSSPVE---SLLQIEDSWAEGLSHLIG 380

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             ++L    T+   +   E L  + I            ER  + R +      V   +  
Sbjct: 381 QTKVLSVFRTRGQRDRFQELLTNQGIPFFPASGLQDIEEREPLNRSV------VWTILGD 434

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           + +G  IP   ++ +  ++   F +     I  
Sbjct: 435 VEKGFYIPSDNILVL--SENFLFRKRPEPRIHR 465



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L+    G+     I        P+           +++ I+    +  
Sbjct: 755 VLTLSATPIPRTLQMSLSGLRGISFIMTPPPGRKPIRTAILTFDRHRIHEAIDRELARDG 814

Query: 584 RILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++      V T  RM   L +   E  I +   H +++     E++       + +LV  
Sbjct: 815 QVFFIHNRVQTISRMVHYLAKLFPEVPIGMA--HGQMEDSRMEEVMEKFIQRHYRILVST 872

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G       L Q  GR  R+       +        + 
Sbjct: 873 AIVESGLDIPAANTIIVNRADMFGISE----LYQIRGRVGRSGQQAYAYFLIP----SES 924

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + +T R+R K L+ N    
Sbjct: 925 GLTDTARKRLKTLQDNTSLG 944


>gi|212694030|ref|ZP_03302158.1| hypothetical protein BACDOR_03556 [Bacteroides dorei DSM 17855]
 gi|212663562|gb|EEB24136.1| hypothetical protein BACDOR_03556 [Bacteroides dorei DSM 17855]
          Length = 1145

 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 95/255 (37%), Gaps = 18/255 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +A LL+   S  +   L G+  S     ++  +   ++  + +  +   A   Y +    
Sbjct: 43  LAALLE--DSSVRTIFLGGLYASAAALFVSSFLRENKQTFVFVLGDLEEAGYFYHDLTQV 100

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                + +F S Y              Y +K+++     + +R      L + +   VV+
Sbjct: 101 NGDEHILFFPSSYRRAVK---------YGQKDAAN----EILRTEVLSRLQKGDPLCVVT 147

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
               +   + S +      ++L +G+ V+ + +   L    ++  D     G + V G  
Sbjct: 148 YPEALAEKVVSQKVLMDKTLKLGVGEHVDTEFITEVLSGYGFEHVDYVYEPGQYAVRGSI 207

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I++F S   +  +R+  FG++++ I  F           ++I I         + +  + 
Sbjct: 208 IDVF-SFASEYPYRIDFFGDEVDSIRTFEVENQLSKEKKQSIAIVPELTNAADK-SGVSF 265

Query: 396 MKYIKEELKMRLIEL 410
            ++I  E  + + + 
Sbjct: 266 FEFISRETVLAMKDF 280



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+       P+  E+ +     + + + IN    +
Sbjct: 733 TLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNE--DIITEAINFEMSR 790

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++       +   +L   +       R    H +++  +  +II D     +DVL+  
Sbjct: 791 NGQVFFVNNRIQNLVELEAMIKRNIPDCRVCIGHGQMEPEKLEKIIFDFVNYDYDVLLAT 850

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 851 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLTSLTP 906

Query: 700 AIDETTRRRE 709
              E  RR +
Sbjct: 907 ---EAKRRLQ 913



 Score = 37.4 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           TVL  +  +  +E L +   +V Y+     T +   I+++L  GK ++L+G + ++ + +
Sbjct: 641 TVLAYQHFQTFSERLKDFPCKVDYLSRARSTKDVSRIVKELADGKINILIGTHKIIGKSV 700

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQT 674
              + GL+ I +  K G +  K  L Q 
Sbjct: 701 KFKDLGLLIIDEEQKFG-VSVKEKLRQM 727


>gi|296436295|gb|ADH18469.1| transcription-repair coupling factor [Chlamydia trachomatis G/9768]
 gi|296438154|gb|ADH20315.1| transcription-repair coupling factor [Chlamydia trachomatis
           G/11074]
 gi|297140655|gb|ADH97413.1| transcription-repair coupling factor [Chlamydia trachomatis G/9301]
          Length = 1079

 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 87/238 (36%), Gaps = 15/238 (6%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +   +   L+  +    ++F +AK+ + ++R  +V+         L+ +       + +E
Sbjct: 16  LKDTKLPSLVENLHSGARSFVIAKLFKELKRSIVVIT-TLAKLDDLFEDLTTLLAESPLE 74

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
           +  S  D       V      + K   I   + +                V +  + +  
Sbjct: 75  FPASEIDLSPKLVNVDA----VGKRDHILYSLQKQSAPVIC---------VTTLKALLER 121

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
             S ES  +  ++L++G+ ++   LL       Y+ + +   +G F   G  ++IFP   
Sbjct: 122 TPSPESMIRDHLELRVGEELDPDTLLDLCKSLGYRHEALAREKGDFAFRGGIVDIFPLSS 181

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
            +  +R+  +G+ +  I  + P        +  I I   +  +      ++ + Y K 
Sbjct: 182 PE-PFRIEFWGDRVSSIRSYNPSDQLSTGKLSQITISPATAIIPTNKLSHSLLDYFKA 238



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 65/190 (34%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + VSATP    L     G     +I    L   PV         E +   I     +G 
Sbjct: 708 CLTVSATPIPRTLYLSLSGARDLSLITMPPLDRLPVSTFVMEHSEETLSAAIRHELLRGG 767

Query: 584 RILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++ +         R+ E +   + E  I V   H ++   E   I    +  + +VLV  
Sbjct: 768 QVYVIHNRIESIFRLGETIRTLIPEARIGVA--HGQMHANELASIFYKFKTQQTNVLVAT 825

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            L+  G+DIP    + I  ADK G       L Q  GR  R        +       +  
Sbjct: 826 ALIENGIDIPNANTILIDHADKFG----MADLYQMKGRVGRWNKKAYCYFLVPHLDRLS- 880

Query: 700 AIDETTRRRE 709
               T++R E
Sbjct: 881 --GPTSKRLE 888



 Score = 45.1 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 15/132 (11%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           +++RE+SE+++    + L ++    +             S+    H +++  F     Y 
Sbjct: 507 RRSRELSEKSVILYAEKLIQMEAQRST----------ANSFIYPPHGEEVIKFAESFPYE 556

Query: 149 PSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ  AI Q+    +  +   +L+ G  G GKT   M   ++A+    +  IVM P  
Sbjct: 557 ETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAVCDGHKQVIVMVPTT 616

Query: 204 ILAAQLYSEFKN 215
           ILA Q +  F  
Sbjct: 617 ILANQHFETFSQ 628


>gi|304367670|gb|ADM26640.1| vasa-like protein [Branchiostoma floridae]
          Length = 785

 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 98/251 (39%), Gaps = 30/251 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++        +D+  ++I ++  +   +  R     + GF  P     R +   
Sbjct: 469 TPGRLLDF--------IDKGVISIKKLKYLILDEADRM---LDMGFE-PEI--RRLVETA 514

Query: 517 EWNCLRP---TTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQVE 569
            W         T++ SAT    E+++     +E  I  T    G  +  VE     +   
Sbjct: 515 SWGMPAKGERQTLMFSAT-FPEEIQKLAQDFLEDYIFLTIGRVGGANTDVEQTVMESSQY 573

Query: 570 DVYDEINLAAQQ--GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D  +++          R+L+ V TKR A+ L  YL +       +H +    ER E + D
Sbjct: 574 DKREKLTDILGNLGQERVLVFVETKRNADFLASYLSQSGFPTTSIHGDRLQKEREEALMD 633

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KV 686
            R G+  VLV  ++   GLDIP+  +V   D        S    +  IGR  R  N+ K 
Sbjct: 634 FRTGRAPVLVATSVAARGLDIPKVMVVVNYD-----LPSSIDEYVHRIGRTGRVGNTGKA 688

Query: 687 ILYADTITKSI 697
           I + D+   + 
Sbjct: 689 ISFYDSDKDAS 699


>gi|237710305|ref|ZP_04540786.1| transcription-repair coupling factor [Bacteroides sp. 9_1_42FAA]
 gi|229455767|gb|EEO61488.1| transcription-repair coupling factor [Bacteroides sp. 9_1_42FAA]
          Length = 1121

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 95/255 (37%), Gaps = 18/255 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +A LL+   S  +   L G+  S     ++  +   ++  + +  +   A   Y +    
Sbjct: 19  LAALLE--DSSVRTIFLGGLYASAAALFVSSFLRENKQTFVFVLGDLEEAGYFYHDLTQV 76

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                + +F S Y              Y +K+++     + +R      L + +   VV+
Sbjct: 77  NGDEHILFFPSSYRRAVK---------YGQKDAAN----EILRTEVLSRLQKGDPLCVVT 123

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
               +   + S +      ++L +G+ V+ + +   L    ++  D     G + V G  
Sbjct: 124 YPEALAEKVVSQKVLMDKTLKLGVGEHVDTEFITEVLSGYGFEHVDYVYEPGQYAVRGSI 183

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I++F S   +  +R+  FG++++ I  F           ++I I         + +  + 
Sbjct: 184 IDVF-SFASEYPYRIDFFGDEVDSIRTFEVENQLSKEKKQSIAIVPELTNAADK-SGVSF 241

Query: 396 MKYIKEELKMRLIEL 410
            ++I  E  + + + 
Sbjct: 242 FEFIPRETVLAMKDF 256



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+       P+  E+ +     + + + IN    +
Sbjct: 709 TLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNE--DIITEAINFEMSR 766

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++       +   +L   +       R    H +++  +  +II D     +DVL+  
Sbjct: 767 NGQVFFVNNRIQNLVELEAMIKRNIPDCRVCIGHGQMEPEKLEKIIFDFVNYDYDVLLAT 826

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 827 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLTSLTP 882

Query: 700 AIDETTRRRE 709
              E  RR +
Sbjct: 883 ---EAKRRLQ 889



 Score = 37.8 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           TVL  +  +  +E L +   +V Y+     T +   I+++L  GK ++L+G + ++ + +
Sbjct: 617 TVLAYQHFQTFSERLKDFPCKVDYLSRARSTKDVSRIVKELANGKINILIGTHKIIGKSV 676

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQT 674
              + GL+ I +  K G +  K  L Q 
Sbjct: 677 KFKDLGLLIIDEEQKFG-VSVKEKLRQM 703


>gi|223940292|ref|ZP_03632150.1| transcription-repair coupling factor [bacterium Ellin514]
 gi|223891059|gb|EEF57562.1| transcription-repair coupling factor [bacterium Ellin514]
          Length = 1212

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 83/533 (15%), Positives = 174/533 (32%), Gaps = 105/533 (19%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR-PAIVMAPNKILAAQLYSEF 213
            A+  LL+ + +   V  L G++ S + F  A + + +   P ++++ +         + 
Sbjct: 14  PAVQSLLRRLENG-GVLSLNGISASAQPFLAALLRQLLPELPIVLVSDSLKTQESFQQDV 72

Query: 214 KNFFPHNAVE-------------------YFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           + +      +                    F   ++    E+ +P  D        I+E+
Sbjct: 73  ETWLNFEGSQQKSKGKAPASQPSTISDRPLFYPAWEVMPHESKLPHADV-------ISER 125

Query: 255 IDRMRHSATRSLLERNDCI--VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           ++ +   A +S  +R      + +  + +          +    L  GD VE  +L+  L
Sbjct: 126 LETLVALARQSPGKRGAAPHIIANVTALLQKTFPASVLKERTRMLNRGDRVEPLDLIEWL 185

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
            +Q Y+ +     +G   + G  ++++P        R+  FG+++E +  F P+T     
Sbjct: 186 EEQGYEPEAQVTQKGEIALRGGILDVYPM-TSPWPVRLEFFGDELESLRYFDPITQISRE 244

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            + T+ +     +             I ++L  R  +      L         I  + E 
Sbjct: 245 QIATVTLPPGGEF------------GILKQLAARDQQASLATLLDYLPTGTLFILSEPER 292

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY-RGDF 491
           +E        E YS  +   +P   P +       D    + E  +   Q+S +   G+ 
Sbjct: 293 IEE-----HTEQYSTQVPNEDPFHIPWS-------DFQELLSEKGMKSLQLSEIVMDGES 340

Query: 492 HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP 551
                L+E         D RP                         E        +  RP
Sbjct: 341 EGMDVLSESEAV---AEDERPF--------------------GESTENSLPFSSLEAFRP 377

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
            G   P  +I  A  Q  + + +++  ++QG  + L                        
Sbjct: 378 LGARAPEPQI--AEAQRREFFAQLHRWSRQGYDVHLFCNN-------------------- 415

Query: 612 MHSEVKTLERIEIIRDLRLGK-FDVLVGINLLREGLDIPECGLVAILDADKEG 663
              + +     E+ +D   G+ F + + +  L  G    E  +V + DA+  G
Sbjct: 416 ---DGERQRFQEVWKDYGFGEDFGLKMHLGALGRGFLNEEAKVVVVTDAEIFG 465



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 11/174 (6%)

Query: 516 EEWNCLRP--TTIVVSATPGS--WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           E++  +R     + +SATP      L       +  I  P      PVE   A+     +
Sbjct: 776 EKFKQIRKLVDVLTLSATPIPRTLYLALTGARDMSTIETPPQ-DRLPVETIVAQYDERLI 834

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLR 629
            + I     +G ++          + + + L       R    H ++K  +  E++    
Sbjct: 835 REAIQRELNRGGQVYFLHNRVGTIDAMAQKLRTLVPHARIVVGHGQMKPDDLEEVMTAFI 894

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            G+ DVL+   ++  GLDIP    + I  AD+ G     + L Q  GR  R  +
Sbjct: 895 NGEADVLLSTTIIESGLDIPNANTMIIDRADRFGL----SDLYQLRGRVGRYKH 944


>gi|265751112|ref|ZP_06087175.1| transcription-repair coupling factor [Bacteroides sp. 3_1_33FAA]
 gi|263238008|gb|EEZ23458.1| transcription-repair coupling factor [Bacteroides sp. 3_1_33FAA]
          Length = 1121

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 95/255 (37%), Gaps = 18/255 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +A LL+   S  +   L G+  S     ++  +   ++  + +  +   A   Y +    
Sbjct: 19  LAALLE--DSSVRTIFLGGLYASAAALFVSSFLRENKQTFVFVLGDLEEAGYFYHDLTQV 76

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                + +F S Y              Y +K+++     + +R      L + +   VV+
Sbjct: 77  NGDEHILFFPSSYRRAVK---------YGQKDAAN----EILRTEVLSRLQKGDPLCVVT 123

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
               +   + S +      ++L +G+ V+ + +   L    ++  D     G + V G  
Sbjct: 124 YPEALAEKVVSQKVLMDKTLKLGVGEHVDTEFITEVLSGYGFEHVDYVYEPGQYAVRGSI 183

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I++F S   +  +R+  FG++++ I  F           ++I I         + +  + 
Sbjct: 184 IDVF-SFASEYPYRIDFFGDEVDSIRTFEVENQLSKEKKQSIAIVPELTNAADK-SGVSF 241

Query: 396 MKYIKEELKMRLIEL 410
            ++I  E  + + + 
Sbjct: 242 FEFIPRETVLAMKDF 256



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+       P+  E+ +     + + + IN    +
Sbjct: 709 TLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNE--DIITEAINFEMSR 766

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++       +   +L   +       R    H +++  +  +II D     +DVL+  
Sbjct: 767 NGQVFFVNNRIQNLVELEAMIKRNIPDCRVCIGHGQMEPEKLEKIIFDFVNYDYDVLLAT 826

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 827 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLTSLTP 882

Query: 700 AIDETTRRRE 709
              E  RR +
Sbjct: 883 ---EAKRRLQ 889



 Score = 37.4 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           TVL  +  +  +E L +   +V Y+     T +   I+++L  GK ++L+G + ++ + +
Sbjct: 617 TVLAYQHFQTFSERLKDFPCKVDYLSRARSTKDVSRIVKELADGKINILIGTHKIIGKSV 676

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQT 674
              + GL+ I +  K G +  K  L Q 
Sbjct: 677 KFKDLGLLIIDEEQKFG-VSVKEKLRQM 703


>gi|237727824|ref|ZP_04558305.1| transcription-repair coupling factor [Bacteroides sp. D4]
 gi|229434680|gb|EEO44757.1| transcription-repair coupling factor [Bacteroides dorei 5_1_36/D4]
          Length = 1121

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 95/255 (37%), Gaps = 18/255 (7%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           +A LL+   S  +   L G+  S     ++  +   ++  + +  +   A   Y +    
Sbjct: 19  LAALLE--DSSVRTIFLGGLYASAAALFVSSFLRENKQTFVFVLGDLEEAGYFYHDLTQV 76

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                + +F S Y              Y +K+++     + +R      L + +   VV+
Sbjct: 77  NGDEHILFFPSSYRRAVK---------YGQKDAAN----EILRTEVLSRLQKGDPLCVVT 123

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
               +   + S +      ++L +G+ V+ + +   L    ++  D     G + V G  
Sbjct: 124 YPEALAEKVVSQKVLMDKTLKLGVGEHVDTEFITEVLSGYGFEHVDYVYEPGQYAVRGSI 183

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I++F S   +  +R+  FG++++ I  F           ++I I         + +  + 
Sbjct: 184 IDVF-SFASEYPYRIDFFGDEVDSIRTFEVENQLSKEKKQSIAIVPELTNAADK-SGVSF 241

Query: 396 MKYIKEELKMRLIEL 410
            ++I  E  + + + 
Sbjct: 242 FEFIPRETVLAMKDF 256



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     +I+       P+  E+ +     + + + IN    +
Sbjct: 709 TLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNE--DIITEAINFEMSR 766

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++       +   +L   +       R    H +++  +  +II D     +DVL+  
Sbjct: 767 NGQVFFVNNRIQNLVELEAMIKRNIPDCRVCIGHGQMEPEKLEKIIFDFVNYDYDVLLAT 826

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 827 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLASLTP 882

Query: 700 AIDETTRRRE 709
              E  RR +
Sbjct: 883 ---EAKRRLQ 889



 Score = 37.4 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           TVL  +  +  +E L +   +V Y+     T +   I+++L  GK ++L+G + ++ + +
Sbjct: 617 TVLAYQHFQTFSERLKDFPCKVDYLSRARSTKDVSRIVKELADGKINILIGTHKIIGKSV 676

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQT 674
              + GL+ I +  K G +  K  L Q 
Sbjct: 677 KFKDLGLLIIDEEQKFG-VSVKEKLRQM 703


>gi|311740779|ref|ZP_07714606.1| transcription-repair coupling factor [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304299|gb|EFQ80375.1| transcription-repair coupling factor [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 1213

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 82/228 (35%), Gaps = 28/228 (12%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           + G+  S + + +  +  A   P +V+      A  L +E         V  F S+ +  
Sbjct: 32  ITGLDQS-RPWALGAL--AHHAPVLVVTATSREAEDLTAELTAMLGE-KVAMFPSW-ETL 86

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV---ES 289
             E   P  D    +   ++  +D ++   T +                 G+      E 
Sbjct: 87  PHERLSPGVDIIGRRAEVLHN-LDSLQVIVTAA----------------RGLSQPILQEV 129

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
             +  V L+     +  E++  L  + YK  D+   RG +   G  I+IFP+ L D   R
Sbjct: 130 EGRAPVHLEEDHEYDFDEVVRELEFRAYKHVDMVAKRGEYATRGGIIDIFPTTL-DYPVR 188

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVE--TIKIYANSHYVTPRPTLNTA 395
           V  +G++I +I +F     + I  +E   + I+              A
Sbjct: 189 VEFWGDEITDIRQFSVADQRTIPEIEVGRVDIFPARELPITDAIAKRA 236



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP +     T V   ED      +  + 
Sbjct: 790 VLTMSATPIPRTLEMSMAGIREM----STILTPPEDRHPVLTYVGAYEDKQVAAAIRREL 845

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +           E     L +     R +  H ++      + ++     ++DVLV
Sbjct: 846 LRDGQTFFIHNKVSDIEKKARELRDLVPEARVVVAHGQMNEEVLEQTVQGFWDREYDVLV 905

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + + +A   G  +    L Q  GR  R+       +        
Sbjct: 906 CTTIVETGLDIANANTLIVENAHHMGLSQ----LHQLRGRVGRSRERGYAYFLYPKG--- 958

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET+  R   +  N    
Sbjct: 959 -ATLTETSYDRLATIAQNNDLG 979


>gi|313159822|gb|EFR59178.1| transcription-repair coupling factor [Alistipes sp. HGB5]
          Length = 1108

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 102/292 (34%), Gaps = 43/292 (14%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
            A+ +L +          L  + G   +F  A          + +A ++  AA L ++F 
Sbjct: 15  KALPRLCREYKKERATVHLKELVGGALSFYAAAAAAKTGGVHVFVAEDRDAAAYLMNDFY 74

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL---LERND 271
           N      V +F S Y          R+  Y  +++    Q    R +A  ++    +   
Sbjct: 75  NLLDEKQVYFFPSSYK---------RSVAYGAEDA----QGVVQRTAAMNAVKGFTKGYL 121

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +     +    +   E+  +  + +K+GDS+    L  +LV   + R D     G + V
Sbjct: 122 IVCTYPEALAERVADAETLRRDTIAVKVGDSISIAVLEDALVDANFTRVDFVYEPGQYSV 181

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN--------- 382
            G  +++F S  E   +R+  FG++++ I  F   +      ++ ++I  N         
Sbjct: 182 RGGIVDVF-SFSESKPYRIDFFGDEVDSIRRFNISSQLSADKLDRVEIIPNLNAGDGAAK 240

Query: 383 -----------SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
                      +++      +   +  I      R   L    R  E  RL 
Sbjct: 241 VSFVQFAGDAAAYWFYDADYVLRRVNDI------RRKTLADMERPEEIDRLM 286



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 23/198 (11%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+    G     +I        P+   S     E + D +     +G 
Sbjct: 702 TLTLTATPIPRTLQFSLMGSRDLSVISTPPPNRQPIVTESHVFSEEIIRDAVETELARGG 761

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--------YMHSEVKTLERIEIIRDLRLGKFDV 635
           ++          EDL   +  + +  R          H ++   +   +I D   G+FDV
Sbjct: 762 QV---YFVHNRVEDL---MTMQGLITRICPKARVGVGHGKMPAEKLERLIMDFIYGEFDV 815

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  G+DIP    + + +A   G     + L Q  GR  R+ N K   Y  +   
Sbjct: 816 LVATTIVENGIDIPNANTIIVNNAQNFGL----SDLHQLRGRVGRS-NQKAYCYLLSPPD 870

Query: 696 SIQLAIDETTRRREKQLE 713
            +   +    RRR + +E
Sbjct: 871 EL---LSSDARRRLRAIE 885


>gi|163741099|ref|ZP_02148491.1| transcription-repair coupling factor [Phaeobacter gallaeciensis
           2.10]
 gi|161385452|gb|EDQ09829.1| transcription-repair coupling factor [Phaeobacter gallaeciensis
           2.10]
          Length = 1155

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 110/335 (32%), Gaps = 34/335 (10%)

Query: 168 EKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVS 227
           ++     G         + K       P + +A +        +    F P   V  F  
Sbjct: 3   QRAITAGGAPEGFDARLILKEAANSDAPVVHVARDDKRMEATRAALAFFAPDMPVISFPG 62

Query: 228 YYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV 287
           + D    +   P  D    + +++   + +M              ++ +  +    + + 
Sbjct: 63  W-DCLPYDRVSPNADIAAARMATLAALVHQM---------PGQFVLLTTLNAATQRVPAR 112

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           +         ++   ++++ L   L +  + +    +  G F V G  I+I+P   +   
Sbjct: 113 QVLKDAAFVAEVDRRIDEEALRGYLTRMGFTKSPTVMEPGDFAVRGGIIDIYPP-GQSGP 171

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+ +FG+ ++    F P T +    +  +++   S  +     +    +  + E     
Sbjct: 172 VRLDLFGDVLDGARRFDPATQRTTEKLSVVELAPVSEVILDEAAVTRFRQNYRIE----- 226

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                 G                E +      Q IE++  +       E   T+F+Y+P+
Sbjct: 227 --FGAAGTD----------DPLYEAVSAGRKYQGIEHWLPFFH-----ERLETMFDYLPQ 269

Query: 468 DSLLFVDE-SHVTIPQISGMYRGDFHRKATLAEYG 501
            ++   D+ +   + +   +      RK  +A+ G
Sbjct: 270 ATVTLDDQVTPARLARWDSIVDQYETRKIAMAQKG 304



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 9/175 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQQ 581
             + ++ATP    L+     + +  I  T  VD    IR+  ++ +   + + +     +
Sbjct: 745 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA-IRTYVSEFDAVTIREALLREHYR 803

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       D+  +L E+   + Y+  H ++   +  + +     GKFDVL+  
Sbjct: 804 GGQSFYVVPRITDLPDVEAFLQEQLPELSYVVAHGQLAAGDLDDRMNAFYDGKFDVLLAT 863

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+             
Sbjct: 864 TIVESGLDIPTANTMVVHRADMFGLAQ----LYQIRGRVGRSKTRAYAYLTTKPR 914



 Score = 42.8 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 12/124 (9%)

Query: 117 LKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLG 175
           L+   +  P      +   +    F     Y  + DQ  AI+++++ + S     +L+ G
Sbjct: 572 LRKAPMMDPP----PHAWEEFSARF----PYQETDDQLRAISEVMEDLQSGSPMDRLICG 623

Query: 176 VTGSGKTFTM--AKVIEAMQR-PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
             G GKT     A  I AM      ++AP  +LA Q  + F   F    +E         
Sbjct: 624 DVGFGKTEVAMRAAFIAAMSGVQVAIVAPTTLLARQHAAAFAQRFRGFPLEVRQLSRFVT 683

Query: 233 QPEA 236
             EA
Sbjct: 684 AKEA 687


>gi|88856044|ref|ZP_01130705.1| transcription-repair coupling factor [marine actinobacterium
           PHSC20C1]
 gi|88814612|gb|EAR24473.1| transcription-repair coupling factor [marine actinobacterium
           PHSC20C1]
          Length = 1202

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 111/346 (32%), Gaps = 59/346 (17%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLG--VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLY 210
           Q +A   L++G+ +      LLG  +T S              R  + +      +  L 
Sbjct: 24  QQSADFSLVEGLRAP-----LLGALLTKS-----------DAPRSLLAITATGRESESLR 67

Query: 211 SEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270
               ++ P   +  F ++ +    E   P  +T  ++  ++ +      +          
Sbjct: 68  RSLSSYLPEAQIVEFPAW-ETLPHERLSPSAETVGKRMQALRDFARWQENPV------GQ 120

Query: 271 DCIVVSSVSCIYGIGSVESYSQMIVQLKIG---DSVEQKELLSSLVKQQYKRQDIGIIRG 327
             +V S  + +  I         I  + +     + +   L   L+   Y R D+   RG
Sbjct: 121 FVLVASVRAALQPIAD---NLTAIEPIALTAGGRNYDLSALSERLIALAYSRVDMVTRRG 177

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVETIKIYANSHYV 386
            F V G  +++F  + E    R+  FG+++E++ EF     + I  +V   ++  +   +
Sbjct: 178 EFAVRGGILDVFAPNHE-HPLRLEFFGDELEQLREFSVADQRSIDGDVVFAELVPSREVL 236

Query: 387 TPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS 446
                   A                      E Q     ++  L  +        +E+ +
Sbjct: 237 LSESVRQRAR---------------------EMQHEFPSLSTMLAKIAEGIPVDGMESLA 275

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
             L  R        L  Y+P D+ + V        +   +   +  
Sbjct: 276 PALVDRLVP-----LTHYLPADAAIAVLSPEKVSSRAINLAETNRE 316



 Score = 42.0 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 70/200 (35%), Gaps = 15/200 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP---PVEIRS-ARTQVEDVYDEINLAAQ 580
            + ++ATP    LE     I E     T   D       +   +  QV        L   
Sbjct: 791 ILAMTATPIPRTLEMAVTGIREMSTLATPPEDRHPILSFVGPYSERQVSAAIRRELLREG 850

Query: 581 QGLRILLTVLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q   +   V +  R+A  L E + +  I V   H ++      +++ D    KFDVLV  
Sbjct: 851 QIFYVHNRVSSINRVAAKLAELVPDARIAVA--HGQLPEAVLEQVMVDFWERKFDVLVST 908

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDI     + I  ADK G  +    L Q  GR  R        +     K    
Sbjct: 909 TIIETGLDIANANTLIIDRADKYGLSQ----LHQLRGRVGRGRERAYAYFLYDEEKP--- 961

Query: 700 AIDETTRRREKQLEHNKKHN 719
            + ET   R   +  N +  
Sbjct: 962 -LSETAHERLDTIAANNELG 980


>gi|148557853|ref|YP_001257567.1| transcription-repair coupling factor [Brucella ovis ATCC 25840]
 gi|148369138|gb|ABQ62010.1| transcription-repair coupling factor [Brucella ovis ATCC 25840]
          Length = 1132

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 66/487 (13%), Positives = 153/487 (31%), Gaps = 71/487 (14%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY-DYYQPEAYVPRTDTYIEKESSINE 253
           P + +  +    A L        P   V +  ++    Y   +             S   
Sbjct: 9   PIMYIVRDGQRIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALC 68

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
            + +  H A          I+ ++ + +  +    +  + ++  + G+ ++  +L + L 
Sbjct: 69  ALKKAPHPA---------VILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLE 119

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
           +  ++R       G + V G  ++++ +   +   R+  FG+ +E I  F P + +    
Sbjct: 120 RNGFERVSTVRDIGEYAVRGGILDLY-AQGAEEPLRLDFFGDTLETIRAFDPASQRTTGT 178

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEML 433
            +   +   S        ++            R   +   G         QR     + +
Sbjct: 179 RKEFVLQPMSEITLSSDMISRF----------RKNYVAMFGAP-------QRDDALYQAI 221

Query: 434 ETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHR 493
                   +E++              T+F++      + V   H+    ++  +      
Sbjct: 222 SEGRRFAGMEHWLPLFYDNLE-----TVFDH---AGSMPVVFDHLVHEALTERHTMVVDH 273

Query: 494 KATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
                       +  D  P +      ++P  + +  TPG  E E  +   +   + P G
Sbjct: 274 YEARLRQAEGKEAGSDAVPYKP-----VKPEMLYL--TPGQVE-EAAEAAGLRIDLTPFG 325

Query: 554 LVD---------------PPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
             +                  E R+A      E V   I      G ++L+   T+   +
Sbjct: 326 APEVSGRTIIHADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEGSLD 385

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            L + L E  +       +++T++R+  ++ L   K    V   +L          LV +
Sbjct: 386 RLCQVLDEHGLE------KIETVDRLSTVKALSRDK----VTAAVLAVESGFDTGDLVVV 435

Query: 657 LDADKEG 663
            + D  G
Sbjct: 436 AEQDILG 442



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 35/260 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  +  T  VD    +R+  +  + +   + +     +
Sbjct: 737 HVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMA-VRTFVSPFDPLVIRETLLRERYR 795

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       D+ E+L E    ++V   H ++      +I+     G++DVL+  
Sbjct: 796 GGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLST 855

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     K    
Sbjct: 856 TIVESGLDIPTANTMIVHRADMFGLAQ----LYQLRGRVGRSKQRAFALFTLPAGKM--- 908

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
            + +   RR K                  +++ +D +       ++        +L  ++
Sbjct: 909 -LTQMAERRLK------------------VLQSLDTLGAGFQLASHDMDIRGAGNLLGEE 949

Query: 760 GKAHLK----SLRKQMHLAA 775
              H+K     L +QM   A
Sbjct: 950 QSGHIKEVGFELYQQMLEEA 969


>gi|15604448|ref|NP_220966.1| transcription-repair coupling factor [Rickettsia prowazekii str.
           Madrid E]
 gi|6226643|sp|O05955|MFD_RICPR RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|3861142|emb|CAA15042.1| TRANSCRIPTION-REPAIR COUPLING FACTOR (mfd) [Rickettsia prowazekii]
 gi|292572220|gb|ADE30135.1| Transcription-repair coupling factor [Rickettsia prowazekii Rp22]
          Length = 1120

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 119/366 (32%), Gaps = 53/366 (14%)

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242
           + +    + + +  I+   N+  A QLY +   F  ++ + YF             P  D
Sbjct: 14  YVIDNFTKNLNQDFILSVSNEEEALQLYKQALFFSSNDNIYYF-------------PSYD 60

Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC--IYGIGSVESYSQMIVQLKIG 300
           T     +S N  I   R      L+  +   ++ + +   +  +   + +S+  ++L   
Sbjct: 61  TIPYDHTSPNANIVSRRAETLTKLITNSKGKLLITHAANLLNKLPPKDFFSKYFLKLYPK 120

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
                 EL   LV+  + R    I  G F V G+ I+I         +R++   + IE I
Sbjct: 121 IKFTMDELSMLLVENSFTRNTSSIDVGEFAVRGEIIDIILPG--PKGYRINFSWDYIESI 178

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
            EF   T    +    + I   +  V    T+                 L   G      
Sbjct: 179 KEFDINTQISTKYCAELVISPANEIVLNSETIGNFKNN----------YLRNFGVNHTDN 228

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
            L        E + +       E                +L +Y+     +F + S   I
Sbjct: 229 PL-------YEAVISGRKFAGYEQLLPLFYYSC-----SSLVDYLNNPICIFDNLSKQAI 276

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN-CLRPTTIVVSATPGSWELEQ 539
            +    Y              F L     N+ L+   +   L PT++  +A+  +  LEQ
Sbjct: 277 LEFENSYN------------DFYLARSKANK-LKVNNFYPTLSPTSLYFTASAITELLEQ 323

Query: 540 CQGIIV 545
              I++
Sbjct: 324 KNNILI 329



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 12/192 (6%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQ 580
              + +SATP    L+     + E  I  T  ++   E+R++    + V   D +     
Sbjct: 729 THVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRL-EVRTSVMPFDPVIIRDALLREHF 787

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G R        +  ED+ + L +    + Y   H ++   +  E++ +  +GKFD+L+ 
Sbjct: 788 RGGRSFYVAPRIKDMEDIEKQLKQIVPELSYKIAHGKMTPSKIDEVMSEFYVGKFDILIS 847

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DI E   + I  AD  G  +    L Q  GR  R    K+  YA     S +
Sbjct: 848 TTIIESGIDIAEANTMIIHKADTLGLSQ----LYQLRGRIGR---GKIRGYAYLTVASNK 900

Query: 699 LAIDETTRRREK 710
                + RR E 
Sbjct: 901 KITSHSLRRLEI 912


>gi|260812834|ref|XP_002601125.1| hypothetical protein BRAFLDRAFT_214468 [Branchiostoma floridae]
 gi|229286416|gb|EEN57137.1| hypothetical protein BRAFLDRAFT_214468 [Branchiostoma floridae]
          Length = 370

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 98/251 (39%), Gaps = 30/251 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++        +D+  ++I ++  +   +  R     + GF  P     R +   
Sbjct: 94  TPGRLLDF--------IDKGVISIKKLKYLILDEADRM---LDMGFE-PEI--RRLVETA 139

Query: 517 EWNCLRP---TTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQVE 569
            W         T++ SAT    E+++     +E  I  T    G  +  VE     +   
Sbjct: 140 SWGMPAKGERQTLMFSAT-FPEEIQKLAQDFLEDYIFLTIGRVGGANTDVEQTVMESSQY 198

Query: 570 DVYDEINLAAQQ--GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D  +++          R+L+ V TKR A+ L  YL +       +H +    ER E + D
Sbjct: 199 DKREKLTDILGNLGQERVLVFVETKRNADFLASYLSQSGFPTTSIHGDRLQKEREEALMD 258

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KV 686
            R G+  VLV  ++   GLDIP+  +V   D        S    +  IGR  R  N+ K 
Sbjct: 259 FRTGRAPVLVATSVAARGLDIPKVMVVVNYD-----LPSSIDEYVHRIGRTGRVGNTGKA 313

Query: 687 ILYADTITKSI 697
           I + D+   + 
Sbjct: 314 ISFYDSDKDAS 324


>gi|213616030|ref|ZP_03371856.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 214

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 81/220 (36%), Gaps = 23/220 (10%)

Query: 254 QIDRMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           +I   R S    L   +   ++V   + +  +          + +K G  + +  L + L
Sbjct: 1   EIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCQHSYLHGHALVMKKGQRLSRDALRAQL 60

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
               Y+  D  +  G +   G  +++FP   E   +R+  F ++I+ +  F   T + + 
Sbjct: 61  DSAGYRHVDQVMEHGEYATRGALLDLFPMGSE-QPYRLDFFDDEIDSLRLFDADTQRTLE 119

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEM 432
            VE I +     +    PT   A++  + + +             E +R  + I    + 
Sbjct: 120 EVEAINLLPAHEF----PTDKAAIELFRSQWRDT----------FEVKRDAEHI---YQQ 162

Query: 433 LETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           +        IE +          EP P LF Y P ++L+ 
Sbjct: 163 VSKGTLPAGIEYWQPLFFS----EPLPPLFSYFPANTLVV 198


>gi|42526796|ref|NP_971894.1| transcription-repair coupling factor [Treponema denticola ATCC
           35405]
 gi|41817111|gb|AAS11805.1| transcription-repair coupling factor [Treponema denticola ATCC
           35405]
          Length = 1155

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 81/518 (15%), Positives = 173/518 (33%), Gaps = 66/518 (12%)

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
             I        + G++G    F + + +   ++P +V+ P +  A  + ++       N 
Sbjct: 24  DEIDENSYPYNITGISGGLFGFFLTEYLYKTRKPVLVVVPTEKEAEAVRADLDFSGIENF 83

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
           V     ++         P    + E+   +   ++    S T+    +    +    S +
Sbjct: 84  VL---PWWGSLAYRPISPTAPVFSERAEVLIRLLESGNESYTK---NKPPVFITCQRSFL 137

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +   Q  V++  G S++   L   L    Y R     +RG F + G+ ++I  +
Sbjct: 138 TPVPPADYLKQNKVEIAAGSSLDILSLAELLSLWGYIRVPRVSVRGEFALRGEVLDICLA 197

Query: 342 H---LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
                E  A+R+    + +E+I  F   +   +   + I  Y     +         +  
Sbjct: 198 SNSGSEKTAYRIQFDFDKVEKIKSFDIASQGSLEEYKKINFYPVKEVIWNDER----IDC 253

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           +++ LK      E   ++++A  L++  T++ E         + +  S  L      + P
Sbjct: 254 LEKNLKTYSEFSENILKIIDA--LKEYKTFEGE---EIFYPLAFQKSSSVLEYAELNDIP 308

Query: 459 --PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              + ++     S + + E      +    +  +  RKA ++EY    P       L+FE
Sbjct: 309 VFYSDYDRQKNSSEILLREYMGLYKKTKTQFDENEKRKALISEY----PEPQ-RILLQFE 363

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
                   +I    T    E +                 DPP   RS    +  + +E+N
Sbjct: 364 SNVQKYNKSIYF-RTLAEQEDKNKTLKFK---------TDPP---RSFFGNIVYLREELN 410

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                   I +                          S+ + L   EI+ + R     + 
Sbjct: 411 NLLNDDWSIFVFAE-----------------------SDNQALRIEEILHEDR-----IK 442

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +    L  G  IP+  ++ I + +  G  R     ++T
Sbjct: 443 ILPYNLSGGFGIPDLKILVIHENEIFGRRRRIPKSVKT 480



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      I +  +I        PVE   A    E V + I   +++G 
Sbjct: 766 CLSLSATPIPRTLHMSLLKIRDMSVIATPPQNRKPVETVIAEFNAEKVAEVIRRESERGG 825

Query: 584 RILLTVLTKRMAEDLTEYLYERN-----IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++          E L E L+        I +   H ++   +  EI     LG F VL+ 
Sbjct: 826 QVFYL---HNRVESLDETLFMLQSLLPEIMIETAHGQMSPNQLEEIFERFSLGGFQVLIA 882

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DIP    + I  AD  G     + L Q  GR  R+             K   
Sbjct: 883 TTIIENGIDIPNANTIIIDRADMYG----VSQLYQLRGRVGRSDKKAYAYLLYPDDK--- 935

Query: 699 LAIDETTRRR 708
            A+ E   +R
Sbjct: 936 -ALSEIAMKR 944


>gi|195125432|ref|XP_002007182.1| GI12524 [Drosophila mojavensis]
 gi|193918791|gb|EDW17658.1| GI12524 [Drosophila mojavensis]
          Length = 602

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 12/158 (7%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           ++++D+   I   +    +I++ V TK+  ++L  ++    + V  +H +   ++R  ++
Sbjct: 342 SKLKDLLSHIYDQSGMPGKIIIFVATKKKVDELARFINAFGVGVGSIHGDKSQMDRDNVL 401

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D R G+ ++LV  ++   GLD+     V   D     F +S    I  IGR  R  ++ 
Sbjct: 402 NDFRSGRANILVATDVAARGLDVDGIKYVINFD-----FPQSSEDYIHRIGRTGRKHSTG 456

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
              YA    K+ + A      R   ++      NINP+
Sbjct: 457 T-SYAFFTRKNAKCA------RALIEILREANQNINPE 487


>gi|110639820|ref|YP_680030.1| transcription-repair coupling factor [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282501|gb|ABG60687.1| transcription-repair coupling factor [Cytophaga hutchinsonii ATCC
           33406]
          Length = 1122

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/372 (15%), Positives = 135/372 (36%), Gaps = 38/372 (10%)

Query: 157 IAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           I  L + +  RE   L L G++GS      A + ++ ++  + +  +K  A    ++ + 
Sbjct: 16  IQLLKQKLQERENNALFLKGLSGSMDALIAAALSKSDKKSHVFILADKDEAYFFQNDLQQ 75

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
                   +  SY   Y  E         +++  ++N  I+           ++   +V 
Sbjct: 76  LLGLPVFVFPASYKKPYHYEQ--VENANILQRAETLNYIINNQ---------DKPSYLVT 124

Query: 276 SSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
             ++    + +  S  +     +IG+ + ++ +   L    ++R D     G + + G  
Sbjct: 125 YPLALSEKVINKRSLVENTFIARIGEKLNREFMEEFLQSYGFERTDFVYEAGQYAIRGGI 184

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           I+IF S+  ++ +R+ +FG +IE I  F P +   + N+  + I  N      +    + 
Sbjct: 185 IDIF-SYANELPFRIELFGTEIESIRTFNPESQLSVDNIPVLSITPNVQTRLLKEERESL 243

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
             ++  +  + + +      ++E    +    +D  +L +TG+   + +       +   
Sbjct: 244 FTFLPADTTLWIKDYALTTEIIEECFSKVESQFDT-ILSSTGNSALLTSPDALFEDKYSF 302

Query: 456 EP---PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRP 512
           E      ++ E+ P          H  IP  + +      +           PS      
Sbjct: 303 EKSIEAYSIIEFGP----------HSYIPNATRIEFEAKPQ-----------PSFNKEFN 341

Query: 513 LRFEEWNCLRPT 524
           L  E++      
Sbjct: 342 LLLEDFRLRINQ 353



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 61/285 (21%), Positives = 105/285 (36%), Gaps = 43/285 (15%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVED---VYDEINLAAQ 580
           T+ ++ATP    L     G     II        PV        V D   + D I+   +
Sbjct: 710 TLTLTATPIPRTLHFSLMGARDLSIIATPPPNRQPVT---TEIHVFDEAFIRDAISFELK 766

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G ++       +  + +   + +     R  + H +++  +  E++     G++DVLV 
Sbjct: 767 RGGQVFFVHNRVKDIDGMAFLIKKLVPDARVTFAHGQMEGDKLEEVMLKFVEGEYDVLVS 826

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            N++  GLDIP    + I  A   G     + L Q  GR  R+ N K   Y  T + S  
Sbjct: 827 TNIIESGLDIPNANTIIINSAHMFGL----SDLHQMRGRVGRS-NKKAFCYLLTPSVS-- 879

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
            A+   +R+R               SV E+  ++ D   +               ++   
Sbjct: 880 -ALTGDSRKRL--------------SVLEEFSDLGDGFKVAMRDLDIRGAG----NMLGA 920

Query: 759 KGKAHLKSLRKQMH-----LAADNL-NFEEAARIRDEI--KRLKS 795
           +    +  L   M+      A   L   E A   RDE+  +RLK+
Sbjct: 921 EQSGFITDLGFDMYHKILDEAIQELKETEFADLFRDELDQQRLKN 965


>gi|93006205|ref|YP_580642.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
 gi|92393883|gb|ABE75158.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
          Length = 552

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 84/209 (40%), Gaps = 22/209 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---ED------VYDE 574
            TI+ SAT      +   G I     +    V   VE      +V   +D      + D+
Sbjct: 217 QTIMCSAT-----WDGPVGKIAASFTKNPERVSIKVESAHIEEKVYYCDDFDHKNRLLDK 271

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I        +I++   TKR  E L + L E   +  ++H ++   +R  I++DLR GK  
Sbjct: 272 IVCQQDM-EQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKVK 330

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   GLDIP    V   D       R     +  IGR  R   + + +   ++ 
Sbjct: 331 ILVATDVAARGLDIPAISHVINYD-----LPRQTEDYVHRIGRCGRAGRTGIAISLCSMD 385

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQ 723
              Q  ++   R  ++++E      + P+
Sbjct: 386 DRPQ--LNAINRYLDRKMEVCIIEGMEPK 412


>gi|306835701|ref|ZP_07468707.1| transcription-repair coupling factor [Corynebacterium accolens ATCC
           49726]
 gi|304568419|gb|EFM43978.1| transcription-repair coupling factor [Corynebacterium accolens ATCC
           49726]
          Length = 1213

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 98/615 (15%), Positives = 190/615 (30%), Gaps = 98/615 (15%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
           A   P + +      A  L +E         V  F S+ +    E   P  D  I K + 
Sbjct: 47  AHHAPVLAVTATSREAEDLTAELTAMMGD-KVAMFPSW-ETLPHERLSPGVDI-IGKRAQ 103

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV---ESYSQMIVQLKIGDSVEQKE 307
           +   ID +R   T +                 G+      E   +  V L+        +
Sbjct: 104 VLHNIDDLRIIVTAA----------------RGLSQPILQEIEGRAPVHLEEDHEYNFDD 147

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           ++ SL  + YK  D+   RG F   G  I++FP+ L D   RV  +G+++ +I +F    
Sbjct: 148 VVRSLEFRAYKHVDMVAKRGEFATRGGIIDVFPTTL-DYPVRVEFWGDEVTDIRQFSVAD 206

Query: 368 GQKIRNVE--TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
            + I  +E   + I+              A                   +L         
Sbjct: 207 QRTIPEIEVGRVDIFTARELPITDAVAQRA------------------AKLAATHTGNPA 248

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
           +   L  +      + +E     L+      P  TL E++P  + + +        ++  
Sbjct: 249 LVELLTKVSEHIPAEGMEAVLPVLSDA----PLITLSEFLPAATHVVMVAPEKIRRRVED 304

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPL----------RFEEWNCL------RPTTIVVS 529
           + + D          G+   +   + PL           +  +  L          +   
Sbjct: 305 LEKTDAE----FLAAGWEAAAMGADGPLSTEGLDTEGSSYRSFESLEVSIREAGQPLWTF 360

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
           + PG     + + + +E    PT   D          +++ +  ++      G R     
Sbjct: 361 SPPGMLAGPEEETLPLEFEPGPTPRGDIK--------EIDAMMAQLLAHTNAGGRAAFIA 412

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
             +   + + E   E+ IR +      +       +         V   +  L++   +P
Sbjct: 413 PAQGAIKRMVERFAEQGIRTKVATPGWEPSAGEVTLYQALSHAGLVFPKVRKLKDAEALP 472

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN----------SKVILYADTITKSIQL 699
              LV + + D  G      +  +   R A+  N            V+     I K +++
Sbjct: 473 ---LVVVTETDLTGNRVGDIADAKR--RPAKRRNKVDPLALKQGDFVVHETHGIGKFLKM 527

Query: 700 A------IDETTRRREKQLEHNKKHNINPQSVKEKIMEVID--PILLEDAATTNISIDAQ 751
           A       DET+RR    LE+       P       M+ +D         +     +   
Sbjct: 528 AERTIQSGDETSRREYIVLEYAPSKRGQPADQLWVPMDSLDLLSKYTGGESPHLSKMGGS 587

Query: 752 QLSLSKKKGKAHLKS 766
               +KKK +A ++ 
Sbjct: 588 DWKNTKKKARAAVRE 602



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 70/204 (34%), Gaps = 23/204 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP +     T V   ED      +  + 
Sbjct: 790 VLTMSATPIPRTLEMSMAGIREM----STILTPPEDRHPVLTYVGAYEDKQVAAAIRREL 845

Query: 581 -QGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +  +           E    +L + + E  I V   H ++      + ++     ++DV
Sbjct: 846 LRDGQTFFIHNKVSDIEKKARELRDLVPEARIVVA--HGQMNEDVLEKTVQGFWDREYDV 903

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  GLDI     + + +A   G  +    L Q  GR  R+       +      
Sbjct: 904 LVCTTIVETGLDIANANTLIVENAHHMGLSQ----LHQLRGRVGRSRERGYAYFLYPKG- 958

Query: 696 SIQLAIDETTRRREKQLEHNKKHN 719
                + ET+  R   +  N    
Sbjct: 959 ---ATLTETSYDRLATIAQNNDLG 979


>gi|82569452|gb|ABB83368.1| VASA-like protein [Pleurodeles waltl]
          Length = 463

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 102/272 (37%), Gaps = 36/272 (13%)

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           +PS  D + L F      R  ++        +       ++V Q+      V+  +    
Sbjct: 210 MPSKEDRQTLMFSATFPERIQSLAKEFLKSDY-----LFVVVGQVGGACSDVEQIIIPVG 264

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              + + + + +        R ++ V TK+ A+ LT  L + N+    +H +    ER E
Sbjct: 265 QHGKKDKLVEILQGLGI--ERTMVFVKTKKRADYLTTLLCQENVLATSIHGDRLQKEREE 322

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            + D R GK +VLV  N+   GLDI     V I D        +    +  IGR  R  N
Sbjct: 323 ALADFRFGKCNVLVATNVAARGLDIENVQHVIIYD-----LSDNIEEYVHRIGRTGRCGN 377

Query: 684 -SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED-- 740
             K I + DT         D T  R   ++  + +  +              P  LE+  
Sbjct: 378 VGKAITFFDTDDNE-----DRTVARSLVKVLSDAQQEV--------------PAWLEEVA 418

Query: 741 --AATTNISIDAQQLSLSKKKGKAHLKSLRKQ 770
             A+ T  SI +   S+  ++G +H+     Q
Sbjct: 419 FSASGTFSSIGSTFASVDSRRGVSHVPGGHAQ 450


>gi|288799748|ref|ZP_06405207.1| transcription-repair coupling factor [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332996|gb|EFC71475.1| transcription-repair coupling factor [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 1147

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 87/237 (36%), Gaps = 21/237 (8%)

Query: 154 PAAIAQLLKGIHSREKVQL-LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           P AIA L K +       + L  +  S      A V    Q+  + +  +   A   Y++
Sbjct: 14  PQAIA-LRKTLSDNATNTIWLKNIKASAVPLLFASVAPKAQQVFVFILADADEAGYFYND 72

Query: 213 FKNFFPHNAVEYFVSYYDY------YQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266
                    V +F S Y        + P + + RT+      +  N              
Sbjct: 73  LAQIMGKEQVMFFPSSYRRAVKYGQHDPASEILRTEVLATLSAKENSDT----------- 121

Query: 267 LERNDCIVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGII 325
           L +    +VS    I  +  S +  S  +V++ +   ++  EL   L++  +   D    
Sbjct: 122 LNKQPLFIVSYPEAIAEMVVSKQLISDKVVKVAVSQVIDLVELRKRLLELGFSECDYVYE 181

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
            G F + G  ++I+ S   +  +RV  FG++++ I  F   +       E+I+I   
Sbjct: 182 PGQFAIRGSLLDIY-SFSHEYPYRVDFFGDEVDSIRTFDIESQLSRDKKESIEILPE 237



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 76/192 (39%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     IIR       P+    +    + + D IN    +  
Sbjct: 737 TLTMSATPIPRTLQFSLMGARDMSIIRTPPPNRYPIHTELSEFSSDVIRDAINFEMSRNG 796

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          ++L+  + +     R    H  ++  E  +II       +DVL+   +
Sbjct: 797 QVYFVNDRISNLQELSNLILKYIPDCRLAIGHGRMQPEELEQIIMGFMNHDYDVLLSTTI 856

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I DA + G     + L Q  GR  R+ N K   Y     KS+   +
Sbjct: 857 IESGIDISNANTIIINDAHRFGL----SDLHQMRGRVGRS-NRKAFCYLLAPPKSL---L 908

Query: 702 DETTRRREKQLE 713
            +  RRR + LE
Sbjct: 909 KQDARRRLEALE 920


>gi|154248182|ref|YP_001419140.1| transcription-repair coupling factor [Xanthobacter autotrophicus
           Py2]
 gi|154162267|gb|ABS69483.1| transcription-repair coupling factor [Xanthobacter autotrophicus
           Py2]
          Length = 1168

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 83/523 (15%), Positives = 166/523 (31%), Gaps = 71/523 (13%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVI------EAMQRPAI-VMAPNKILAAQLYS 211
           QLL    +  +  +L  V    +   +A +       +    P++ V+  +    A +  
Sbjct: 5   QLLADALAEGRPLILSRVADGMEGMVVADLARSLAGRKNAPWPSLTVICRDGQRMAAVER 64

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE--- 268
               F P   V  F             P  D      +S N  I   R +    L     
Sbjct: 65  GLAFFAPELEVLSF-------------PSWDCLPYDRASPNASIVARRMATLAKLARIKG 111

Query: 269 -RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
                ++ +  + +  + +    +   +    G++++ + +     +  + R       G
Sbjct: 112 GNASVLLTTVNATVQRVPAKGLVAAQSLVAAPGNTIDLEGVTQWAEQNGFLRTSTVRDTG 171

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT 387
            + V G  I++FP  L D   R+  FG+ +E I  F P T +    V ++ +   + +  
Sbjct: 172 EYAVRGGLIDLFPPGL-DAPIRLDFFGDTLETIRAFDPETQRTTGQVRSLDLVPMAEFQL 230

Query: 388 PRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR 447
              T+             R+  + + G   +   L        E +        +E++  
Sbjct: 231 TTETMRRF----------RMAYVAEFGAARKGDTL-------YEAVSEGRRHAGMEHWLP 273

Query: 448 YLTGRNPGEPPPTLFEYIPEDSLLFVDESH-----VTIPQISGMYRGDFHRKATLAEYGF 502
               R       TLF+Y+ E   L +D          I QI+  Y     RK      G 
Sbjct: 274 LFHERM-----DTLFDYL-EGGTLLLDPLAEEAGGERIAQIADYYD---ARKGGQELGGG 324

Query: 503 RL--PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
            +  P   D   L   EWN       +   +P +        +I    ++         E
Sbjct: 325 TIYNPLPADRLYLSGPEWNKRLARHSLARLSPFAAPEGGDNRVIDLGGVQGRSFAAERAE 384

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
                   +     +    Q+  +++L   ++   E L   L +  ++       +  + 
Sbjct: 385 --PEANVFDAAIAHVRE-LQKSRKVILAGWSEGSRERLGTVLADHGLK------GLAAIS 435

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           R + +  L   K    + +  L  G + P+     I + D  G
Sbjct: 436 RFDSLAALP--KTQAALAVFGLEAGFETPD--FAVIGEQDILG 474



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 75/191 (39%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + ++ATP    L+     + E  I  T  VD    +R+  T  + +   + +     +
Sbjct: 769 HVLTLTATPIPRTLQLAMTGVRELSIIATPPVDRLA-VRTFITPFDPLVVREALLRERYR 827

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ E+L      ++V   H ++      +I+     G++DVL+  
Sbjct: 828 GGQSFYVVPRIEDLAEVREFLAASVPEVKVAVAHGQLAAGALEDIMTAFYDGQYDVLLST 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLD+P    + +  AD  G  +    L Q  GR  R       ++    TK + +
Sbjct: 888 TIVESGLDVPNANTLIVHRADMFGLAQ----LYQLRGRVGRAKARAYAIFTVPATKPMTV 943

Query: 700 AIDETTRRREK 710
              +  RR + 
Sbjct: 944 ---QAERRLKV 951



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAMQRPA 196
           F+ +  Y  + DQ AAI  +L  + S     +L+ G  G GKT      A  +    +  
Sbjct: 612 FRARFPYEETDDQDAAIDAVLDDLASGHPMDRLICGDVGFGKTEVALRAAFAVALSGKQV 671

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAV 222
            V+ P  +LA Q +  F   F    V
Sbjct: 672 AVVVPTTLLARQHFKTFSERFKGLPV 697


>gi|194747363|ref|XP_001956121.1| GF24750 [Drosophila ananassae]
 gi|190623403|gb|EDV38927.1| GF24750 [Drosophila ananassae]
          Length = 613

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 76/187 (40%), Gaps = 19/187 (10%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q +      +          +++D+   I   +    +I++ V TK+  +
Sbjct: 327 LELSANHNIRQFVEVCAEHEK-------GGKLKDLLSHIYDQSTSPGKIIIFVATKKKVD 379

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L  ++    + V  +H +   ++R  ++ D R G+ ++LV  ++   GLD+     V  
Sbjct: 380 ELARFINAFGVGVGSIHGDKSQMDRDSVLNDFRNGRHNILVATDVAARGLDVDGIKYVIN 439

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
            D     F +S    +  IGR  R  ++    YA    K+ + A      R   ++    
Sbjct: 440 FD-----FPQSSEDYVHRIGRTGRKHSTGT-SYAFFTRKNAKCA------RALIEILREA 487

Query: 717 KHNINPQ 723
             N+NP+
Sbjct: 488 NQNVNPE 494


>gi|124516600|gb|EAY58108.1| transcription-repair coupling factor [Leptospirillum rubarum]
          Length = 1153

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 4/173 (2%)

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-YG 283
           F S++       ++P  +    +  S  + I   R  A   L +    +VV++   +   
Sbjct: 73  FQSFFGSSLSICFLPEEEVLPYEPESPPDFIRAERIHALNLLAQGKVDVVVTTWPAVVRK 132

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSH 342
                  S++   L  G+ +E+  L  SLV+  + R       G F V G  ++++ P+H
Sbjct: 133 TLPPRLLSEVTWTLSAGEFIERTALADSLVRLGFLRVLQVSAPGEFAVRGAILDLYSPAH 192

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
            +    R+    + +  I  F     + +  +  I+I   S ++ P   +  A
Sbjct: 193 QD--PVRLEWDDDILASIRSFDINNQKSLAKLSRIEILPGSEWIPPSGKVQDA 243



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L+    G+     I        P+           +++ I+    +  
Sbjct: 754 VLTLSATPIPRTLQMSLSGLRGISFIMTPPPGRKPIRTAILTFDRHRIHEAIDRELARDG 813

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +    +  YL +    + +   H +++     E++       + +LV   +
Sbjct: 814 QVFFIHNRVQTISRMVHYLAKLFPGVPIGMAHGQMEDSRMEEVMEKFIQRHYRILVSTAI 873

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + +  AD  G       L Q  GR  R+       +        +  +
Sbjct: 874 VESGLDIPAANTIIVNRADMFGISE----LYQIRGRVGRSGQQAYAYFLIP----SESGL 925

Query: 702 DETTRRREKQLEHNKKHN 719
            +T R+R K L+ N    
Sbjct: 926 TDTARKRLKTLQDNTSLG 943


>gi|284040349|ref|YP_003390279.1| transcription-repair coupling factor [Spirosoma linguale DSM 74]
 gi|283819642|gb|ADB41480.1| transcription-repair coupling factor [Spirosoma linguale DSM 74]
          Length = 1126

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 95/236 (40%), Gaps = 18/236 (7%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY 228
           K   + G+ GS      + + +++    + +  ++  AA  +++ +N      + + +SY
Sbjct: 41  KRLQIKGLVGSLDAVVASTIFKSVGGNHLYILTDRDEAAYFFNDLQNLLSREVLLFPMSY 100

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL---LERNDCIVVSSVSCIYGIG 285
              YQ E         IE  + +      MR      L    +    +V    +    + 
Sbjct: 101 KKPYQYEE--------IENANVL------MRAEVLNKLNPAPKDGLLMVTYPEALSEKVI 146

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +  S     + +++G+ ++   +   L   ++++ D     G F V G  I++F S   +
Sbjct: 147 NKRSLQANTLTIRVGEKLDTHFVSELLQTYEFEKTDFVYEAGQFSVRGGIIDVF-SFASE 205

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             +R+ +FG+++E I +F P +      V+ I +  N      + T  +   ++ E
Sbjct: 206 FPFRIDLFGDEVESIRKFNPESQLSTDAVDFINVIPNIQTKLVQETRESFFDFLPE 261



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 70/194 (36%), Gaps = 15/194 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L         +      P        E+ +    +  + D ++   ++
Sbjct: 722 VLTLTATPIPRTLHFSLMGARDLSVIATPPPNRQPVTTEVHAFNEAI--IRDAVSSEVRR 779

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E +   +       R    H ++       I+     G +DVL+  
Sbjct: 780 GGQVFFVHNRVNDIESIGNLIMRLVPEARIGVAHGQMDGERLERIMTRFIEGDYDVLIST 839

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           N++  GLDIP    + I +A   G     + L Q  GR  R+ N K   Y  T   S+  
Sbjct: 840 NIIESGLDIPNANTILINNAHYFGL----SDLHQMRGRVGRS-NRKAFCYLLTPPPSVLT 894

Query: 700 AIDETTRRREKQLE 713
           A     R+R + LE
Sbjct: 895 A---DARKRLQTLE 905


>gi|255325397|ref|ZP_05366501.1| transcription-repair coupling factor [Corynebacterium
           tuberculostearicum SK141]
 gi|255297483|gb|EET76796.1| transcription-repair coupling factor [Corynebacterium
           tuberculostearicum SK141]
          Length = 1212

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 74/210 (35%), Gaps = 25/210 (11%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
           A   P +V+      A  L +E         V  F ++ +    E   P  D    +   
Sbjct: 47  AHHAPVLVVTATSREAEDLTAELTAMLGE-KVAMFPAW-ETLPHERLSPGVDIIGRRAEV 104

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSV---ESYSQMIVQLKIGDSVEQKE 307
           ++  +D ++   T +                 G+      E   +  V L+     +  E
Sbjct: 105 LHN-LDSLQVIVTAA----------------RGLSQPILQEVEGRAPVHLEEDHEYDFDE 147

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           ++  L  + YK  D+   RG +   G  I+IFP+ L D   RV  +G++I +I +F    
Sbjct: 148 VVRELEFRAYKHVDMVAKRGEYATRGGIIDIFPTTL-DYPVRVEFWGDEITDIRQFSVAD 206

Query: 368 GQKIRNVE--TIKIYANSHYVTPRPTLNTA 395
            + I  +E   + I+              A
Sbjct: 207 QRTIPEIEVGRVDIFPARELPITDAIAKRA 236



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP +     T V   ED      +  + 
Sbjct: 790 VLTMSATPIPRTLEMSMAGIREM----STILTPPEDRHPVLTYVGAYEDKQVAAAIRREL 845

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  +           E     L +     R +  H ++      + ++     ++DVLV
Sbjct: 846 LRDGQTFFIHNKVSDIEKKARELRDLVPEARVVVAHGQMNEEVLEQTVQGFWDREYDVLV 905

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDI     + + +A   G  +    L Q  GR  R+       +        
Sbjct: 906 CTTIVETGLDIANANTLIVENAHHMGLSQ----LHQLRGRVGRSRERGYAYFLYPKG--- 958

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET+  R   +  N    
Sbjct: 959 -ATLTETSYDRLATIAQNNDLG 979


>gi|302345727|ref|YP_003814080.1| transcription-repair coupling factor [Prevotella melaninogenica
           ATCC 25845]
 gi|302150109|gb|ADK96371.1| transcription-repair coupling factor [Prevotella melaninogenica
           ATCC 25845]
          Length = 1178

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 85/241 (35%), Gaps = 9/241 (3%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  AI ++ K      +   L G+  S      A + E  +   + +  +   A   Y++
Sbjct: 15  QAGAIQKIQK--DKSIRTVFLQGLVASAAPMFFASIAERWKTTTVFVLNDNDEAGYFYND 72

Query: 213 FKNFF----PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
            K           V   + +   Y+      + D     E    E + R+   A+ +   
Sbjct: 73  LKTIAMPADGEGKVAEVLFFPSSYRRAVKYGQRD--AGNEILRTEVLTRLSALASDADNA 130

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
               IV    +    + S +   +  + L +   ++  E+  +L    +   D     G 
Sbjct: 131 LPLYIVTEPSALSELVVSKKQLDERRLTLTVDQHIDIVEVEKTLRSFGFTETDYVYEPGQ 190

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           F V G  I+++ S   ++ +R+  FG+DIE I  F   T      +  ++I      ++ 
Sbjct: 191 FAVRGSIIDVY-SFSNELPFRIDFFGDDIETIRNFEVETQLSTEKLTRVEIVPELTTMSE 249

Query: 389 R 389
            
Sbjct: 250 E 250



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     I+R       P++   A    E + D IN    +  
Sbjct: 764 TLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEIASFSHEVIADAINFEMSRNG 823

Query: 584 RILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++   V  +      +A  + +Y+    I +   H ++K  E  EI+       +DVL+ 
Sbjct: 824 QV-YFVNDRISNLPEIANLIKKYVPNCRIAIG--HGQMKPEELEEIVMGFMNYDYDVLLS 880

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DI     + I DA + G     + L Q  GR  R+ N K   Y   +     
Sbjct: 881 TTIVENGIDISNANTIIINDAHRFGL----SDLHQMRGRVGRS-NKKAFCY---LLAPPL 932

Query: 699 LAIDETTRRREKQLE 713
            A++   RRR + LE
Sbjct: 933 AALNPEARRRLEALE 947



 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           TVL  +  +   + L +  +RV Y+       +  +++ DL  GK D+LVG + L+ + +
Sbjct: 672 TVLAFQHYQTFKKRLKDMPVRVDYLSRARSAKQTKQVLEDLAEGKIDILVGTHKLIGKSV 731

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQ 673
              + GL+ I +  K G + +K  L Q
Sbjct: 732 KWHDLGLLIIDEEQKFG-VSTKEKLRQ 757


>gi|121945883|dbj|BAF44660.1| RNA helicase [Neobenedenia girellae]
          Length = 548

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 12/161 (7%)

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G I E+I++   +    VE    +++V+ + +E+     +   IL+   TKRM E L  +
Sbjct: 364 GQIPEKIVQKMKI----VEKFDWKSEVQKILNELLQDKDEDESILVFCNTKRMVELLEFH 419

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           LY+  ++   +H  +    R   +R LR G+ +VLV  ++   GLDIP  G V  +    
Sbjct: 420 LYKSGLKCGRLHGGMGQTNRDRSLRLLRDGRINVLVATSVAARGLDIPAIGAVVNV---- 475

Query: 662 EGFLRSKTSLIQTIGRAARNVNSK---VILYADTITKSIQL 699
            G   +    I  +GR  R          +++D+I    +L
Sbjct: 476 -GLPTNLDDYIHRVGRTGRFGQCGLALTCVFSDSIHGQREL 515


>gi|330955650|gb|EGH55910.1| transcription-repair coupling factor [Pseudomonas syringae Cit 7]
          Length = 221

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 73/187 (39%), Gaps = 27/187 (14%)

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            L    Y+  D     G F V G  I++FP     + +R+ +F ++IE +  F P T + 
Sbjct: 3   RLEASGYRYVDTVYEHGEFTVRGALIDLFPM-GSKLPFRIDLFDDEIETLRTFDPDTQRS 61

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
           I  VE++++     +   +  +                    + R  E   ++ R +   
Sbjct: 62  IDKVESVRLLPAREFPLQKEEVTRF-----------------KARFRERFDVDFRRSPIF 104

Query: 431 EMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGD 490
           + L +  +   IE Y          E   TLF+Y+P+D+ +F   S   I Q +  +  D
Sbjct: 105 QDLSSGITPAGIEYYIPLFF-----EETSTLFDYLPQDTQVF---SLPGIEQAAENFWND 156

Query: 491 -FHRKAT 496
             +R   
Sbjct: 157 VRNRYEE 163


>gi|323222138|gb|EGA06523.1| transcription-repair coupling factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
          Length = 1049

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 76/204 (37%), Gaps = 22/204 (10%)

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           +   ++V   + +  +          + +K G  + +  L + L    Y+  D  +  G 
Sbjct: 3   QRGVLIVPVNTLMQRVCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGE 62

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           +   G  +++FP   E   +R+  F ++I+ +  F   T + +  VE I +     +   
Sbjct: 63  YATRGALLDLFPMGSE-QPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEF--- 118

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
            PT   A++  + + +             E +R  + I    + +        IE +   
Sbjct: 119 -PTDKAAIELFRSQWRDT----------FEVKRDAEHI---YQQVSKGTLPAGIEYWQPL 164

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLF 472
                  EP P LF Y P ++L+ 
Sbjct: 165 FFS----EPLPPLFSYFPANTLVV 184



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 652 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 709

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          ++ AE L E + E  I +   H +++  E   ++ D    +F+VLV
Sbjct: 710 GGQVYYLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLV 767

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 768 CTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHPKAM 823


>gi|289742973|gb|ADD20234.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 616

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 13/164 (7%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q+I      D   +++S  +Q+ D         +   +I++ V TKR  +
Sbjct: 344 LELSANHNIRQVIEICDENDKETKLKSLLSQIYD-------TGENPGKIIIFVETKRRVD 396

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            L  Y+    +R   +H +    ER  ++R+ R GK ++LV  ++   GLD+     V  
Sbjct: 397 HLVRYIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVIN 456

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            D     + +S    I  IGR  R+ N+K   YA     + + +
Sbjct: 457 FD-----YPQSSEDYIHRIGRTGRS-NTKGTSYAFFTRNNAKQS 494


>gi|76789489|ref|YP_328575.1| transcription-repair coupling factor [Chlamydia trachomatis
           A/HAR-13]
 gi|237805099|ref|YP_002889253.1| transcription-repair coupling factor [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311580|ref|ZP_05354150.1| transcription-repair coupling factor [Chlamydia trachomatis 6276]
 gi|255317881|ref|ZP_05359127.1| transcription-repair coupling factor [Chlamydia trachomatis 6276s]
 gi|76168019|gb|AAX51027.1| transcription-repair coupling factor [Chlamydia trachomatis
           A/HAR-13]
 gi|231273399|emb|CAX10314.1| transcription-repair coupling factor [Chlamydia trachomatis
           B/TZ1A828/OT]
          Length = 1079

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 90/239 (37%), Gaps = 17/239 (7%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +   +   L+  +    ++F +AK+ + ++R  +V+         L+ +       + +E
Sbjct: 16  LKDTKLPSLVENLHSGARSFVIAKLFKELKRSIVVIT-TLAKLDDLFEDLTTLLAESPLE 74

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-Y 282
           +  S  D       V   D   +++           H       +    I V+++  +  
Sbjct: 75  FPASEIDLSPKLVNV---DAVGKRD-----------HILYSLQKQSAPVICVTTLKALSE 120

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
              S ES  +  ++L++G+ ++   LL       Y+ + +   +G F   G  ++IFP  
Sbjct: 121 RTPSPESMIRDHLELRVGEELDPDTLLDLCKSLGYRHEALAREKGDFAFRGGIVDIFPLS 180

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             +  +R+  +G+ +  I  + P        +  I I   +  +      ++ + Y K 
Sbjct: 181 SPE-PFRIEFWGDRVSSIRSYNPSDQLSTGKLSQITISPATAIIPTNKLSHSLLDYFKA 238



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 65/190 (34%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + VSATP    L     G     +I    L   PV         E +   I     +G 
Sbjct: 708 CLTVSATPIPRTLYLSLSGARDLSLITMPPLDRLPVSTFVMEHSEETLSAAIRHELLRGG 767

Query: 584 RILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++ +         R+ E +   + E  I V   H ++   E   I    +  + +VLV  
Sbjct: 768 QVYVIHNRIESIFRLGETIRTLIPEARIGVA--HGQMHANELASIFYKFKTQQTNVLVAT 825

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            L+  G+DIP    + I  ADK G       L Q  GR  R        +       +  
Sbjct: 826 ALIENGIDIPNANTILIDHADKFG----MADLYQMKGRVGRWNKKAYCYFLVPHLDRLS- 880

Query: 700 AIDETTRRRE 709
               T++R E
Sbjct: 881 --GPTSKRLE 888



 Score = 45.1 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 15/132 (11%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           +++RE+SE+++    + L ++    +             S+    H +++  F     Y 
Sbjct: 507 RRSRELSEKSVILYAEKLIQMEAQRST----------ANSFIYPPHGEEVIKFAESFPYE 556

Query: 149 PSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ  AI Q+    +  +   +L+ G  G GKT   M   ++A+    +  IVM P  
Sbjct: 557 ETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAVCDGHKQVIVMVPTT 616

Query: 204 ILAAQLYSEFKN 215
           ILA Q +  F  
Sbjct: 617 ILANQHFETFSQ 628


>gi|294934696|ref|XP_002781195.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239891530|gb|EER12990.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 584

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 12/189 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPP-----VEIRSARTQVEDVYDE 574
            T + SAT         +    E+ IR     T L   P     VE+ S   + +  +D 
Sbjct: 354 QTTMWSATWPKEVQSMARDFCREEPIRLTVGNTQLQANPDVKQRVEVVSEMDKRQMFFDW 413

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +     +G RI++   TK+ A+ LT  +   N     +H + +  ER  I+ D + G+ +
Sbjct: 414 LKETYPKGSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILNDFKTGRCN 473

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++ + GLDI     V   D  K   +      I   GRA    NS   +  DT T
Sbjct: 474 VLVATDVAQRGLDIKNVEWVVNYDMPKT--VEDYVHRIGRTGRAGAVGNSLTFITNDTHT 531

Query: 695 -KSIQLAID 702
              +++A D
Sbjct: 532 PDRVRMAKD 540


>gi|256828791|ref|YP_003157519.1| transcription-repair coupling factor [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577967|gb|ACU89103.1| transcription-repair coupling factor [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1146

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 89/229 (38%), Gaps = 15/229 (6%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213
           P A+ +L+ G   R+      G   + + F    +IE      +V+ P+  L   LY   
Sbjct: 4   PQALQKLIDG-SERQTRIFKSGP--ASQMFLAQALIEKGHNVVLVLPPSADLP--LYDSL 58

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
              F             + +   Y         ++   +   +R R     +  +R   +
Sbjct: 59  ARLFSPADRNLSFWERRWLRFPHYSV-------EDPRRSPWPERWRTLFALTQKKRGRGV 111

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           ++   + I      E   +  + L  G+ + Q++LL +LV   Y R  +    G   + G
Sbjct: 112 LLPLENLIQKWPHPELLQREHLNLSEGEEISQEDLLETLVNWGYARVSMVTAVGETSLRG 171

Query: 334 DSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           D ++IF P +  D   R+  FG+ +E I  F P++ +    ++++ I  
Sbjct: 172 DIMDIFCPGY--DHPLRLEFFGDTLERIRLFEPMSQRSRAELKSLTILP 218



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 68/189 (35%), Gaps = 11/189 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+    GI    +I        PVE          +   +     +G 
Sbjct: 752 VLTLTATPIPRTLQLSLSGIRGLSVIETPPRDRKPVETSLLERDPAQLKVILERELARGG 811

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  E + E++       R    H ++K  +  E +     G+ DVLV   +
Sbjct: 812 QVFWVYNRVQGLERVVEFVSSLVPGARVGMGHGQMKAHDLEETMHKFWHGELDVLVCTAI 871

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD P    + +  A   G  +    L Q  GR  R+       +       +Q   
Sbjct: 872 IESGLDFPRANTLIVDQAQLFGLGQ----LYQLRGRVGRSSEQAYAYFIIPDLDRLQ--- 924

Query: 702 DETTRRREK 710
            ET+R+R K
Sbjct: 925 -ETSRKRLK 932


>gi|237803178|ref|YP_002888372.1| transcription-repair coupling factor [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231274412|emb|CAX11207.1| transcription-repair coupling factor [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 1079

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 90/239 (37%), Gaps = 17/239 (7%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +   +   L+  +    ++F +AK+ + ++R  +V+         L+ +       + +E
Sbjct: 16  LKDTKLPSLVENLHSGARSFVIAKLFKELKRSIVVIT-TLAKLDDLFEDLTTLLAESPLE 74

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-Y 282
           +  S  D       V   D   +++           H       +    I V+++  +  
Sbjct: 75  FPASEIDLSPKLVNV---DAVGKRD-----------HILYSLQKQSAPVICVTTLKALSE 120

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
              S ES  +  ++L++G+ ++   LL       Y+ + +   +G F   G  ++IFP  
Sbjct: 121 RTPSPESMIRDHLELRVGEELDPDTLLDLCKSLGYRHEALAREKGDFAFRGGIVDIFPLS 180

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             +  +R+  +G+ +  I  + P        +  I I   +  +      ++ + Y K 
Sbjct: 181 SPE-PFRIEFWGDRVSSIRSYNPSDQLSTGKLSQITISPATAIIPTNKLSHSLLDYFKA 238



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 65/190 (34%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + VSATP    L     G     +I    L   PV         E +   I     +G 
Sbjct: 708 CLTVSATPIPRTLYLSLSGARDLSLITMPPLDRLPVSTFVMEHSEETLSAAIRHELLRGG 767

Query: 584 RILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++ +         R+ E +   + E  I V   H ++   E   I    +  + +VL+  
Sbjct: 768 QVYVIHNRIESIFRLGETIRTLIPEARIGVA--HGQMHANELASIFYKFKTQQTNVLIAT 825

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            L+  G+DIP    + I  ADK G       L Q  GR  R        +       +  
Sbjct: 826 ALIENGIDIPNANTILIDHADKFG----MADLYQMKGRVGRWNKKAYCYFLVPHLDRLS- 880

Query: 700 AIDETTRRRE 709
               T++R E
Sbjct: 881 --GPTSKRLE 888



 Score = 45.1 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 15/132 (11%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           +++RE+SE+++    + L ++    +             S+    H +++  F     Y 
Sbjct: 507 RRSRELSEKSVILYAEKLIQMEAQRST----------ANSFIYPPHGEEVIKFAESFPYE 556

Query: 149 PSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ  AI Q+    +  +   +L+ G  G GKT   M   ++A+    +  IVM P  
Sbjct: 557 ETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAVCDGHKQVIVMVPTT 616

Query: 204 ILAAQLYSEFKN 215
           ILA Q +  F  
Sbjct: 617 ILANQHFETFSQ 628


>gi|325270511|ref|ZP_08137111.1| transcription-repair coupling factor [Prevotella multiformis DSM
           16608]
 gi|324987087|gb|EGC19070.1| transcription-repair coupling factor [Prevotella multiformis DSM
           16608]
          Length = 1182

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 92/235 (39%), Gaps = 11/235 (4%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A+ ++ +   +  K   L G+  S      A V E  +   + +  +   A   Y++
Sbjct: 15  QAEAVRKVQE--DASVKTVFLQGLVASAAPVFFASVAERWKATTVFVLNDSDEAGYFYND 72

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM---RHSATRSLLER 269
            +        E  V+   +Y P AY  R      +  + NE +      R SA  S  ER
Sbjct: 73  LRTVAMPEDGEDRVADVLFY-PSAY--RRAVKYGQRDAGNEILRTEVLTRLSALASEKER 129

Query: 270 N-DCIVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
                +V+  S +  +  S     +  + L +G      E+  +L    +   D     G
Sbjct: 130 PLPLFIVTEPSALAELVVSKRQLDERRLTLAVGQHTGIVEVEKTLRSFGFSETDYVYEPG 189

Query: 328 TFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
            F V G  I+++ S+  ++ +R+  FG+DIE +  F   T    R +E ++I   
Sbjct: 190 QFAVRGSIIDVY-SYSNELPFRIDFFGDDIETVRTFEVETQLSDRKLERVEIVPE 243



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     I+R       P++   A    E + D +N    +  
Sbjct: 764 TLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEIASFSHEVIADAVNFEMSRNG 823

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          +++ + + +   + RV   H ++K  E  E +       +DVL+   +
Sbjct: 824 QIYFVNDRISNLQEIADLIRKYVPDCRVAVGHGQMKPEELEETVMGFMNYDYDVLLSTTI 883

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I DA + G     + L Q  GR  R+ N K   Y   +      A+
Sbjct: 884 VENGIDIPNANTIIINDAHRFGL----SDLHQMRGRVGRS-NKKAFCY---LLAPPLAAL 935

Query: 702 DETTRRREKQLE 713
           +   RRR + LE
Sbjct: 936 NPEARRRLEALE 947


>gi|298291681|ref|YP_003693620.1| transcription-repair coupling factor [Starkeya novella DSM 506]
 gi|296928192|gb|ADH89001.1| transcription-repair coupling factor [Starkeya novella DSM 506]
          Length = 1170

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 74/467 (15%), Positives = 143/467 (30%), Gaps = 74/467 (15%)

Query: 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQ------RPAIVMAP-NKILAAQLYSEFKNFFP 218
           +  +   L  V G  +   +A +  A+        P + +   +    A+L      F P
Sbjct: 13  APGRTLTLANVPGGMEGLVIADLARALAAQDDAAWPTLFVICRDAERMAELERALPFFAP 72

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL-----ERNDCI 273
              V  F             P  D      +S +  I   R +    L      E    +
Sbjct: 73  GVEVLSF-------------PAWDCLPYDRASPHGDIVARRMTTLARLARVKGREGGSIV 119

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           + +  + +  +   +  +        G+++   E+++      Y R       G + V G
Sbjct: 120 LTTVNAALQRVPRRDLVATQSFSAAPGNALSLDEVVAWAEINGYLRTSTVRDTGEYAVRG 179

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             +++FP  L     R+  FG+ +E I  F P T +    + ++ +   S +     T+ 
Sbjct: 180 GIVDLFPPGL-PAPVRLDFFGDTLESIRSFDPETQRTAMQMRSLDLVPMSEFQLTTETMR 238

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
                       R+  +   G         QR     E +        +E++        
Sbjct: 239 RF----------RMAYVAAFGAA-------QRGDLLYEAVSEGRRYPGMEHWLPLFH--- 278

Query: 454 PGEPPPTLFEYIPEDSLLFVDE----SHVTIPQISGMYRGDFHRKATLAEYGFR----LP 505
             +   TLF+Y P   +    +    +   + QI+  Y     RK  +   G      LP
Sbjct: 279 --DGLDTLFDYAPGSPIFMEAQGGEAAASRLDQIADYYD---ARKHGMEHGGGAPYKPLP 333

Query: 506 SCMDNRPLRFEEWNCLRPTTIVV----SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
              +   L  EEW   R     +     A P S ++    G             + P   
Sbjct: 334 P--ERLYLTAEEWERRRGEAANIALSGFALPESKDVIDLDGHAARSFAPERADPEAP--- 388

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
                 + D+  E      +  R +L   +    + L   L +  ++
Sbjct: 389 ------LFDIAAEYLRDLAKKKRTILAAWSDGSRDRLATVLSDHGLK 429



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + ++ATP    L+     + E  I  +  VD    +RS  T  + +   + +     +
Sbjct: 769 HVLTLTATPIPRTLQLAMTGVRELSIIASPPVDRLA-VRSFVTPFDPLIVREALLRERYR 827

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +            ++ ++L  +   ++V   H ++   +  EI+     G+FDVL+  
Sbjct: 828 GGQSFYVCPRIEDLAEVKDFLDRQVPEVKVAVAHGQMAATQLEEIMSAFYDGQFDVLLST 887

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + I  AD  G  +    L Q  GR  R   SK   YA     + + 
Sbjct: 888 TIVESGLDIPTANTLIIHRADMFGLAQ----LYQLRGRVGR---SKTRAYAIFTLPAEKQ 940

Query: 700 AIDETTRRREK 710
              +  RR + 
Sbjct: 941 VTAQAERRLKV 951



 Score = 42.0 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 52/157 (33%), Gaps = 5/157 (3%)

Query: 72  TASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQS-DNPLLKNGKIWTPHRSWS 130
                E  S+     +E Q   +           +   I+     L+K       H +  
Sbjct: 542 PVENLELLSRYGSEDTEAQLDRLGGGGWQARKARMKSRIREMAAELIKVAAQRQLHEAPR 601

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MA 186
           +   +     F+ +  Y  + DQ AAI  +   + S     +L+ G  G GKT      A
Sbjct: 602 LVPAAGLYDEFRARFPYEETEDQDAAIESVFDDLGSGHPMDRLVCGDVGFGKTEVALRAA 661

Query: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
             +    +   V+ P  +LA Q +  F   F    V 
Sbjct: 662 FAVALDGKQVAVVVPTTLLARQHFKTFSERFKGLPVV 698


>gi|114800270|ref|YP_760685.1| transcription-repair coupling factor [Hyphomonas neptunium ATCC
           15444]
 gi|114740444|gb|ABI78569.1| transcription-repair coupling factor [Hyphomonas neptunium ATCC
           15444]
          Length = 1145

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 100/585 (17%), Positives = 183/585 (31%), Gaps = 81/585 (13%)

Query: 238 VPRTDTYIEKESSINEQIDRMRHSATRSLL-----ERNDCIVVSSVSCIYGIGSVESYSQ 292
           +P  D       S    +   R +    +      +    ++ ++ + +     VE+  +
Sbjct: 27  LPGWDVLPYDRISPTPAVAARRCAGLARISRYEKSQGPLLVITTAGALVQRSAPVETLKK 86

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             + ++ G++V+  +L   L    Y R      +G + V G  I+IFP    +  +R+  
Sbjct: 87  ASLSIRAGETVKANDLTEYLAFNGYVRSGTVREQGEYAVRGGIIDIFPPTAAE-PFRLDF 145

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           FG+ +E I  F   T +     E +     S  +     +  A          R   LE 
Sbjct: 146 FGDVLETIRTFDTETQRSTGKAEAVTFAPVSEILFN-DNVLAAF---------RDRFLET 195

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
            G     Q          E    +   Q +E++              TLF+Y+   +L  
Sbjct: 196 FGPPSGDQM--------YEAARASIRRQGVESWLPLFHK-----QVDTLFDYVGPGALFG 242

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYG-------FRLPSCMDNRPLRFEEWNCLRPTT 525
           +  SH+T               A   E G         LP       L   +        
Sbjct: 243 L--SHLTSEAAHERLTQAADYYAARLEAGGGDIRKARVLPPGRLYLDLEELDDLLATNAV 300

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI 585
           +  S  PG    E           R  G    P   R+     E V          G  +
Sbjct: 301 VRFS--PG----EPSPNAFDMGGRR--GRDFAPERQRTDENIFETVIAHARALYASGKPV 352

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           +    +   A+ L   L +  +           L ++  +   +  K D  V    L EG
Sbjct: 353 VFAAWSAGSADRLINVLSDHGLTA---------LAQVHSLDAAK--KTDFTVAEVPLEEG 401

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-----ARNVNSKVILYADTITKSI-QL 699
            ++P+     I +AD  G   +     +          +      V+     + K I   
Sbjct: 402 FNLPDV--AMISEADVLGDRLAAPRRKRKSASFITDATSLTPGDLVVHIDHGVGKYIGLK 459

Query: 700 AIDETTR-RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
            ++ T       QLE+      +   +  + +++I     E++ +    +        K 
Sbjct: 460 TLEVTGAPHDCLQLEY---AGGDMIFIPVENIDLISRYGSEESESQLDRLGGAGWQTRKA 516

Query: 759 KGKAHLKSLRKQ-MHLAADNLNFEEAARIRDEIKRLKSSPYFQGL 802
           K K  +  +  + M +A        AAR   E+KR ++    QGL
Sbjct: 517 KAKKRILEMAAELMQIA--------AAR---ELKRAEAVQSGQGL 550



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 13/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + +SATP    L+     I +  I  T  VD    +R+  T+ +   + + +     +
Sbjct: 711 HVLTLSATPIPRTLQMALTGIRDLSIIATPPVDRL-SVRTYITEEDTVTLREALLREKYR 769

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +           + L  +L      V ++  H ++   E  +I+     GK+DVL+  
Sbjct: 770 GGQAFFVAPRITDLDKLENFLRTHVPEVSFIVAHGQMAAGELEDIMTAFYEGKYDVLLST 829

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + I  AD  G  +    L Q  GR  R+       +     K    
Sbjct: 830 TIVESGLDIPRANTLIIHRADMFGLAQ----LYQLRGRVGRSKLRAYAYFTTPKDK---- 881

Query: 700 AIDETTRRREK 710
            + E+  +R K
Sbjct: 882 VVTESAEKRLK 892



 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 5/145 (3%)

Query: 78  FQSQSSISMSEKQTREISEQT-MTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSK 136
             S+     SE Q   +      T   +A  R+++    L++        R+ ++ +   
Sbjct: 490 LISRYGSEESESQLDRLGGAGWQTRKAKAKKRILEMAAELMQIAAARELKRAEAVQSGQG 549

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFT---MAKVIEAM 192
               F  +  Y  + DQ +AI  +L  + S +   +L+ G  G GKT      A V    
Sbjct: 550 LYEEFAARFPYEETDDQLSAIEDVLGDLSSGKPMDRLVCGDVGFGKTEVALRAAFVAAMS 609

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFF 217
            +   V+AP  +LA Q +  F+  F
Sbjct: 610 GKQVAVIAPTTLLARQHFKTFEERF 634


>gi|91200730|emb|CAJ73782.1| similar to transcription-repair coupling factor [Candidatus
           Kuenenia stuttgartiensis]
          Length = 1092

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 86/235 (36%), Gaps = 29/235 (12%)

Query: 158 AQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA------MQRPAIVMAPNKILAAQLYS 211
            ++++ + S +    + G+ GS      A V         +    +++ P+   A + + 
Sbjct: 15  KEIIRQLSSGKGC-CVNGLWGSSANLFAAAVANEHFYTKGLTPKILLVVPDAEDAREDWE 73

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN- 270
           + K F                 P    P  +     ES   E I   R      L  +N 
Sbjct: 74  DLKTFSN--------------LPVTLFPAVEDIFNNESDAYEDIMAQRLFILNQLCRKNK 119

Query: 271 ------DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
                 D IV S  + I  + S ++    IV  + G     + L+  L    Y+      
Sbjct: 120 DASHQTDVIVSSIQALIQPVPSKKTIGDNIVSFQKGQEYPMENLIGLLHSHHYQETSQVE 179

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +G + + G  I+IFP   E +  R+  FG++IE +  F   T Q +  + + +I
Sbjct: 180 NQGEYAIRGGIIDIFPFATE-IPCRIEYFGDEIESVRSFNVETQQSVAQINSCQI 233



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 25/205 (12%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV----- 568
           E +  +R     + ++ATP    L      I +     + L  PP+  +S RTQ+     
Sbjct: 691 ERFKKMRQVVDMLTLTATPIPRTLHMSLMGIKD----ISSLNTPPLGRQSIRTQIMRFDP 746

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEV-KTLERIEII 625
           + +   I L   +  ++          E +   L       R   +H ++       + +
Sbjct: 747 QRIRQAILLEMNRNGQVYFVHNRVYNIERIAHTLSTIVPEARILVVHGQMMDEKLLAQRM 806

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +D    K D+LV   ++  GLDIP    + I  AD  G       L Q  GR  R  +  
Sbjct: 807 KDFVDHKADILVSTTIIESGLDIPNVNTIFINCADSFGL----ADLHQLRGRVGRYKHHA 862

Query: 686 VILYADTITKSIQ-------LAIDE 703
                  I + +         AI+E
Sbjct: 863 YAYIVLPIDRPVTPEAEKRVKAIEE 887


>gi|152013501|sp|A4RHF1|DED1_MAGO7 RecName: Full=ATP-dependent RNA helicase DED1
          Length = 671

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 17/186 (9%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLV--------DPPVEIRSARTQVEDVYDE 574
            T++ SAT PG +  +  +  + + I    G V           +E++    ++  + D 
Sbjct: 385 QTLMFSATFPG-YIQQLARDFLKDYIFLSVGRVGSTSENITQRVMEVKHRDDKISHLLDL 443

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++     G   L+ V TKR A++L+++L  +N+    +H +    ER   +   R G+  
Sbjct: 444 LS--THGGGLTLIFVETKRNADELSDFLQNQNLPATSIHGDRTQRERERALEMFRTGRCP 501

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV   +   GLDIP    V   D             +  IGR  R  N+ +      + 
Sbjct: 502 ILVATAVAARGLDIPNVTHVINYD-----LPTDIDDYVHRIGRTGRAGNTGIATAFFDMK 556

Query: 695 KSIQLA 700
            +  +A
Sbjct: 557 DNSGVA 562


>gi|46580312|ref|YP_011120.1| transcription-repair coupling factor [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449729|gb|AAS96379.1| transcription-repair coupling factor [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 1160

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 115/347 (33%), Gaps = 29/347 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            A L++ + S+    + +  +G      +   +    R A+++  +    A L       
Sbjct: 4   FAALVRKLASKGCGHIEVTRSGMATAARLGNAVLDAGRSAVMVVRDAEELA-LARGLLTL 62

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN--DCIV 274
           F  +A           +P               + N      R +A  +L ++     ++
Sbjct: 63  FSPDA---SAGDSPLVKPRWESRWVVMPQHPLGARNRDAWASRMAALFALGQKRVPQGVL 119

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           ++  + +  +   + ++   + L  GD +  + +L   V   + R  +    G   V GD
Sbjct: 120 ITVDNFLSKLPPADLFASHELTLACGDEMAPELVLEQAVDWGFDRVQMVSRPGEIAVRGD 179

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++I+P   E    R+  FG  +EEI  F     + +  ++ + +   S  V      + 
Sbjct: 180 IVDIYPPGYE-RPLRLEFFGETLEEIRLFDASNQRSLGKLDEMVLLPVSPVVLSAELRSK 238

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A          R   L  +G L E Q                G  + IE +   L     
Sbjct: 239 AT--------ARWKRLFSKGMLTEEQY--------------AGLLRGIERHGEGLMPGAY 276

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
            E P  + E++P D+   +      +  +    +         AE G
Sbjct: 277 YEAPTVVEEWLPRDAAWILPGRKELVDAVEAAQQNWEALFDKQAEEG 323



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 15/186 (8%)

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---ED--VYDEINLAAQQG 582
           ++ATP    L+     I E  +  T     P E +   T +   +D  +   +     + 
Sbjct: 766 LTATPIPRTLQLSMSGIRELSVIET----APPERKPVATALIERDDAALKSILEREIARE 821

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +  E  TEY+ +     R    H ++      E +     G+ DVLV   
Sbjct: 822 GQVFWVHNRVQGLERTTEYVRKLVPDARVGMAHGQMTERALEETMHRFWHGELDVLVCTA 881

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  GLD P    + +  A   G  +    L Q  GR  R+      ++      ++   
Sbjct: 882 IVESGLDFPRANTLIVDQAQMFGLGQ----LYQLRGRVGRSDRQAYAIFVVPDADNLSDI 937

Query: 701 IDETTR 706
             E  R
Sbjct: 938 ARERMR 943


>gi|120602306|ref|YP_966706.1| transcription-repair coupling factor [Desulfovibrio vulgaris DP4]
 gi|120562535|gb|ABM28279.1| transcription-repair coupling factor [Desulfovibrio vulgaris DP4]
 gi|311233705|gb|ADP86559.1| transcription-repair coupling factor [Desulfovibrio vulgaris RCH1]
          Length = 1159

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 115/347 (33%), Gaps = 29/347 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            A L++ + S+    + +  +G      +   +    R A+++  +    A L       
Sbjct: 3   FAALVRKLASKGCGHIEVTRSGMATAARLGNAVLDAGRSAVMVVRDAEELA-LARGLLTL 61

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN--DCIV 274
           F  +A           +P               + N      R +A  +L ++     ++
Sbjct: 62  FSPDA---SAGDSPLVKPRWESRWVVMPQHPLGARNRDAWASRMAALFALGQKRVPQGVL 118

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           ++  + +  +   + ++   + L  GD +  + +L   V   + R  +    G   V GD
Sbjct: 119 ITVDNFLSKLPPADLFASHELTLACGDEMAPELVLEQAVDWGFDRVQMVSRPGEIAVRGD 178

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            ++I+P   E    R+  FG  +EEI  F     + +  ++ + +   S  V      + 
Sbjct: 179 IVDIYPPGYE-RPLRLEFFGETLEEIRLFDASNQRSLGKLDEMVLLPVSPVVLSAELRSK 237

Query: 395 AMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP 454
           A          R   L  +G L E Q                G  + IE +   L     
Sbjct: 238 AT--------ARWKRLFSKGMLTEEQY--------------AGLLRGIERHGEGLMPGAY 275

Query: 455 GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYG 501
            E P  + E++P D+   +      +  +    +         AE G
Sbjct: 276 YEAPTVVEEWLPRDAAWILPGRKELVDAVEAAQQNWEALFDKQAEEG 322



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 15/186 (8%)

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---ED--VYDEINLAAQQG 582
           ++ATP    L+     I E  +  T     P E +   T +   +D  +   +     + 
Sbjct: 765 LTATPIPRTLQLSMSGIRELSVIET----APPERKPVATALIERDDAALKSILEREIARE 820

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +  E  TEY+ +     R    H ++      E +     G+ DVLV   
Sbjct: 821 GQVFWVHNRVQGLERTTEYVRKLVPDARVGMAHGQMTERALEETMHRFWHGELDVLVCTA 880

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  GLD P    + +  A   G  +    L Q  GR  R+      ++      ++   
Sbjct: 881 IVESGLDFPRANTLIVDQAQMFGLGQ----LYQLRGRVGRSDRQAYAIFVVPDADNLSDI 936

Query: 701 IDETTR 706
             E  R
Sbjct: 937 ARERMR 942


>gi|206900533|ref|YP_002251220.1| transcription-repair coupling factor [Dictyoglomus thermophilum
           H-6-12]
 gi|206739636|gb|ACI18694.1| transcription-repair coupling factor [Dictyoglomus thermophilum
           H-6-12]
          Length = 1070

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 104/256 (40%), Gaps = 23/256 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            + L K I+SR  ++ L G+           + +  +RP + +  N+   + ++ + +  
Sbjct: 25  FSNLEKEINSRSNIK-LFGIYKGFFPLLFLYL-KRYKRPILWVTNNEEDLS-IWEDLQED 81

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                            P  ++P       +    + Q+   R  A   ++  N   +V+
Sbjct: 82  L----------ELSILPPYVHLP------YERPLRSPQVQGKRLKAISDIIYNNSFSIVA 125

Query: 277 SV-SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           S+ S IY +   E+  + I+++K+G+ + ++++   L +  Y+R       G + + G  
Sbjct: 126 SLKSLIYPLIPKENIEKRILKIKVGEEITREKIEKFLAENLYQRTPQVEKIGEYSIRGGI 185

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP--RPTLN 393
           ++IFP   E+   R+  FG++I  I  F     + I+  + + +   S  +      +  
Sbjct: 186 LDIFPPLYEN-PIRIEFFGDEISSIRFFNLEDKRSIKTTKEVILTPISELIEDKNEESYF 244

Query: 394 TAMKYIKEELKMRLIE 409
              K IK  L   L +
Sbjct: 245 LKNKEIKTYLFSYLPK 260



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 76/199 (38%), Gaps = 11/199 (5%)

Query: 513 LRFEEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           L+ E +    P    + +SATP    L     GI    ++        P++        E
Sbjct: 687 LQKESFKKKYPHVDILYLSATPIPRTLSMVLSGIRQFSVLETPPENRLPIQTFVVEYNPE 746

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRD 627
            + + I    ++G ++          E + E L +      Y   H ++   E  E++ +
Sbjct: 747 IIQEGIRRELERGGQVYYVCNDIERLEKIKEELTKLVPEATYSIAHGKMDDEELTEVMSN 806

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              GK DVL+   ++  G+D+P    + + +A+  G  +    L Q  GR  R+      
Sbjct: 807 FYDGKIDVLIATTIIESGIDVPNANTLFVENAEHMGLAQ----LYQLRGRIGRSYKQAYA 862

Query: 688 LYADTITKSIQLAIDETTR 706
            +     K  +L++D   R
Sbjct: 863 YFLHAPLK--KLSLDSIKR 879


>gi|66363178|ref|XP_628555.1| eIF4A-1; eukaryotic translation initiation factor 4A-1; RNA SFII
           helicase [Cryptosporidium parvum Iowa II]
 gi|46229820|gb|EAK90638.1| eIF4A-1; eukaryotic translation initiation factor 4A-1; RNA SFII
           helicase [Cryptosporidium parvum Iowa II]
          Length = 396

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 23/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE--QIIRPTGLVDPPVEIRSARTQVE----------DV 571
            T++VSAT     L   Q  +    QI+ P   V    +IR    QVE          D+
Sbjct: 198 QTVLVSATLPDDILVMAQKFMRNPLQILVPKEEVSLD-KIRQYHVQVEEEKWKFETLCDL 256

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TK   E L++ + E +  V ++H ++  + R EI+R+ R G
Sbjct: 257 YDTLTVT-----QSIIFCNTKNKVEWLSKKMMENHFTVSFVHGDLPQVTREEILREFREG 311

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           K  VL+  +L   G+D+ +  LV   D        +K   I  IGR+ R   S + +   
Sbjct: 312 KTRVLITTDLWGRGIDVQQVNLVVNYD-----LPINKELYIHRIGRSGRFGRSGIAINLI 366

Query: 692 TITKSIQLAIDE 703
           T      L++ E
Sbjct: 367 TKEDESMLSLLE 378


>gi|15605481|ref|NP_220267.1| transcription-repair coupling factor [Chlamydia trachomatis
           D/UW-3/CX]
 gi|3329208|gb|AAC68343.1| Transcription-Repair Coupling [Chlamydia trachomatis D/UW-3/CX]
 gi|296437224|gb|ADH19394.1| transcription-repair coupling factor [Chlamydia trachomatis
           G/11222]
 gi|297748878|gb|ADI51424.1| Transcription-repair coupling factor [Chlamydia trachomatis D-EC]
 gi|297749758|gb|ADI52436.1| Transcription-repair coupling factor [Chlamydia trachomatis D-LC]
          Length = 1079

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 91/239 (38%), Gaps = 17/239 (7%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +   +   L+  +    ++F +AK+ + ++R  +V+         L+ +       + +E
Sbjct: 16  LKDTKLPSLVENLHSGARSFVIAKLFKELKRSIVVIT-TLAKLDDLFEDLTTLLAESPLE 74

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI-Y 282
           +              P ++  +  +    + + +  H       +    I V+++  +  
Sbjct: 75  F--------------PASEIDLSPKLVNGDAVGKRDHILYSLQKQSAPVICVTTLKALSE 120

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342
              S ES  +  ++L++G+ ++   LL       Y+ + +   +G F   G  ++IFP  
Sbjct: 121 RTPSPESMIRDHLELRVGEELDPDTLLDLCKSLGYRHEALAREKGDFAFRGGIVDIFPLS 180

Query: 343 LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             +  +R+  +G+ +  I  + P        +  I I   +  +      ++ + Y K 
Sbjct: 181 SPE-PFRIEFWGDRVSSIRSYNPSDQLSTGKLSQITISPATAIIPTNKLSHSLLDYFKA 238



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 65/190 (34%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + VSATP    L     G     +I    L   PV         E +   I     +G 
Sbjct: 708 CLTVSATPIPRTLYLSLSGARDLSLITMPPLDRLPVSTFVMEHSEETLSAAIRHELLRGG 767

Query: 584 RILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++ +         R+ E +   + E  I V   H ++   E   I    +  + +VLV  
Sbjct: 768 QVYVIHNRIESIFRLGETIRTLIPEARIGVA--HGQMHANELASIFYKFKTQQTNVLVAT 825

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            L+  G+DIP    + I  ADK G       L Q  GR  R        +       +  
Sbjct: 826 ALIENGIDIPNANTILIDHADKFG----MADLYQMKGRVGRWNKKAYCYFLVPHLDRLS- 880

Query: 700 AIDETTRRRE 709
               T++R E
Sbjct: 881 --GPTSKRLE 888



 Score = 45.1 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 15/132 (11%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           +++RE+SE+++    + L ++    +             S+    H +++  F     Y 
Sbjct: 507 RRSRELSEKSVILYAEKLIQMEAQRST----------ANSFIYPPHGEEVIKFAESFPYE 556

Query: 149 PSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ  AI Q+    +  +   +L+ G  G GKT   M   ++A+    +  IVM P  
Sbjct: 557 ETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAVCDGHKQVIVMVPTT 616

Query: 204 ILAAQLYSEFKN 215
           ILA Q +  F  
Sbjct: 617 ILANQHFETFSQ 628


>gi|67623509|ref|XP_668037.1| eukaryotic initiation factor 4A-3 (eIF4A-3) (eIF-4A-3)
           [Cryptosporidium hominis TU502]
 gi|54659212|gb|EAL37800.1| eukaryotic initiation factor 4A-3 (eIF4A-3) (eIF-4A-3)
           [Cryptosporidium hominis]
          Length = 395

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 23/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE--QIIRPTGLVDPPVEIRSARTQVE----------DV 571
            T++VSAT     L   Q  +    QI+ P   V    +IR    QVE          D+
Sbjct: 197 QTVLVSATLPDDILVMAQKFMRNPLQILVPKEEVSLD-KIRQYHVQVEEEKWKFETLCDL 255

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TK   E L++ + E +  V ++H ++  + R EI+R+ R G
Sbjct: 256 YDTLTVT-----QSIIFCNTKNKVEWLSKKMMENHFTVSFVHGDLPQVTREEILREFREG 310

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           K  VL+  +L   G+D+ +  LV   D        +K   I  IGR+ R   S + +   
Sbjct: 311 KTRVLITTDLWGRGIDVQQVNLVVNYD-----LPINKELYIHRIGRSGRFGRSGIAINLI 365

Query: 692 TITKSIQLAIDE 703
           T      L++ E
Sbjct: 366 TKEDESMLSLLE 377


>gi|282859198|ref|ZP_06268320.1| transcription-repair coupling factor [Prevotella bivia JCVIHMP010]
 gi|282588017|gb|EFB93200.1| transcription-repair coupling factor [Prevotella bivia JCVIHMP010]
          Length = 1169

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 111/325 (34%), Gaps = 37/325 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A+ +LL+    + K   L G+T S      A +        + +  +   A   Y++
Sbjct: 15  QVKALLKLLE--DGKSKNIFLQGLTASATPMLFAALAYKQAHSFLFVMNDNDEAGYFYND 72

Query: 213 FKNFF-PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER-- 269
            K    P +  E        + P +Y  R      +  + NE +     +   ++     
Sbjct: 73  LKTMLAPEDDAEPLADV--LFFPSSY--RRAIKYGQCDAGNEILRTEVLTKLAAIRTNLE 128

Query: 270 -----NDCIVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
                    +VS  S I  +  S     +  + L +   +   E+   L +  +   D  
Sbjct: 129 KGKPLTPLFIVSEPSAIAELVVSQRQLDERRLTLTVDQHINIVEVGKKLREFGFSETDYV 188

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G F + G  I+++ S   ++ +R+  FG+DI+ I  F   T   +   +++ I    
Sbjct: 189 YEPGQFAIRGSIIDVY-SFSSEMPYRIDFFGDDIDTIRTFEVETQLSVDKKKSVDIVPEL 247

Query: 384 HYVTPRPTLN-------------------TAMKYIKEELKMR--LIELEKEGRLLEAQRL 422
             +T                          A+  I +E   +  L E  +    +E   +
Sbjct: 248 ATLTEEKVSFLQFLPQDTTLVFKDFLFVRDAIDQIYKEGFTQQVLTEQLEGKTEVEQYEI 307

Query: 423 EQRITYDLEMLETTGSCQSIENYSR 447
           +QR   + +++ T        N+ R
Sbjct: 308 QQRYMRESQLIATGAFMTDALNFPR 332



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 66/187 (35%), Gaps = 12/187 (6%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     I+R       P++        E + D IN    +  
Sbjct: 760 TLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEIVDFSHEIIADAINFEMSRNG 819

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +DL   +       R    H ++K  E  EI+       +DVL+   +
Sbjct: 820 QVFFVNDRIGNLQDLAAMIRRYVPDCRVAIGHGQMKPEELEEILLGFMNYDYDVLLSTTI 879

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I DA + G     + L Q  GR  R+              S+    
Sbjct: 880 VENGIDISNANTIIINDAHRFGL----SDLHQMRGRVGRSNKKAFCYLVAPPLASL---- 931

Query: 702 DETTRRR 708
             T  RR
Sbjct: 932 -TTEARR 937



 Score = 41.2 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           TVL  +  +     L +  +RV Y+     T +  +I+ DL  GK ++LVG + LL + +
Sbjct: 668 TVLAFQHYKSFQSRLKDMPVRVDYLSRARSTKQTKQILEDLAEGKINILVGTHKLLGKSV 727

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQT 674
              + GL+ I +  K G + +K  L Q 
Sbjct: 728 KWQDLGLLIIDEEQKFG-VSTKEKLRQI 754


>gi|239618514|ref|YP_002941836.1| transcription-repair coupling factor [Kosmotoga olearia TBF 19.5.1]
 gi|239507345|gb|ACR80832.1| transcription-repair coupling factor [Kosmotoga olearia TBF 19.5.1]
          Length = 1018

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 92/276 (33%), Gaps = 31/276 (11%)

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
               ++ F+S++     E      D +  ++  ++  +   R S   +L  +N   + +S
Sbjct: 33  SERELQRFLSFHSPSGDEGIFFSHDVFPFEDVRVSAYVRNHRMSCLSNLQNKNIKRIYTS 92

Query: 278 VSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           +  I       E+      +++I D          LV+  Y+R    +  G F   G+ +
Sbjct: 93  LDAILRKTLPPEAMKGSTKKIRIDDPFGFH--PDKLVEMGYERVFTVVEPGQFSWKGEVV 150

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           +IF      + +R+ +F + +EEI  F P   + ++++  I+I+     +T    ++ A 
Sbjct: 151 DIFVP-GSVLPYRLILFDDIVEEIKLFDPGNQRSVKHISEIEIFPAGEVLTIEENVSLAK 209

Query: 397 KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE 456
             I+   K                   QR                ++        +    
Sbjct: 210 LRIENAEKATGKRFSISPLN------WQR----------------MDTVVGLFYRQQAW- 246

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH 492
               L +Y+ +D      +    +       R    
Sbjct: 247 ----LGDYLGDDCFFLFVDPEEGLKDFELRERETLE 278



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 64/193 (33%), Gaps = 15/193 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             + +SATP    L      + E       P G   P   +     ++  +   +     
Sbjct: 626 NVLTMSATPIPRTLYMALSGLRELSMIATPPIGRTMPETYVGPVNDRL--IRTAVLREIN 683

Query: 581 QGLRILLTVLTKRMAEDLTE----YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +G +++           L       L E  I V   H ++      + + D   GK  +L
Sbjct: 684 RGGQVIYVHNRVNELNKLENKIRTLLPEVEIGVA--HGQMPKRLFEKNVGDFYSGKLQML 741

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +   ++  G+DIP    + + D+ + G  +    L Q  GR  R+       +     + 
Sbjct: 742 LCTTIIESGVDIPNANTLIVDDSQRYGLAQ----LYQLRGRVGRSTRRAFAYFLYNPKRL 797

Query: 697 IQLAIDETTRRRE 709
              A +     RE
Sbjct: 798 TPKAKERLKALRE 810



 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           TVL ++  E     L    + V  +       ER +I+R+L+ GK DV++G + LL + +
Sbjct: 535 TVLARQHYETFKNRLEPFGVNVDILDRYRTPKERQKILRELKNGKIDVIIGTHSLLSKDV 594

Query: 647 DIPECGLVAILDADKEGFLRSKT 669
              + GLV I +    G ++ + 
Sbjct: 595 RFADLGLVIIDEEQLFGVMQKEH 617


>gi|311745141|ref|ZP_07718926.1| transcription-repair coupling factor [Algoriphagus sp. PR1]
 gi|126577659|gb|EAZ81879.1| transcription-repair coupling factor [Algoriphagus sp. PR1]
          Length = 1117

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 85/484 (17%), Positives = 169/484 (34%), Gaps = 73/484 (15%)

Query: 171 QLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
             L GV+GS     +A   +      +++A +K  AA L S+ +N         F S + 
Sbjct: 31  IQLKGVSGSLDMILLASYFQEHGGYHLIVAQDKEEAAYLNSDLQNLLDTEEHMIFPSSFK 90

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
                  V   +  +  E  +N  ++           E++  I+    +    + +  S 
Sbjct: 91  RAYQYEEVDNANVLLRAEM-LNMVLEA---------KEKSRIIITYPEALYERVINKRSL 140

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            +     K+G+SV+ + +   L    +++ D     G F + G  +++F S   +  +R+
Sbjct: 141 QENTFIAKVGESVDMEFVSEILTSYDFEKTDFVYEPGQFAIRGGILDVF-SFANENPYRL 199

Query: 351 SMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE-------EL 403
            +FG +IE I  F P +   I +V+ I +  N      +    + + ++ E       + 
Sbjct: 200 ELFGKEIESIRTFDPESQLSIASVDQISLIPNVQTKLLQEVRQSFLSFLPENCRVWHKDY 259

Query: 404 KMRLIELEKEGRLLEA--QRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           ++ L  +++     E     + Q+   D  ML+        ++    ++  +  E     
Sbjct: 260 QLTLDVMDECFHKAEQSFDLIAQQTQTDKLMLKPEDLFDKGKDLVELVSKHSQIE----- 314

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW--N 519
                    L          QI          K          PS   N  L  E +  N
Sbjct: 315 ---FGRQFYL------KNSKQIQW------ESKPQ--------PSFNKNFDLLVENFSEN 351

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
             +    +++A     E E+       QI R  G+     E+     QV+ +   +    
Sbjct: 352 EKKGFINILTA-----ENEK-------QIERLLGIFR---ELDPTL-QVQSMLLGLREGF 395

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +  L  L+     ++ E    Y  +         S+ K L  I+ ++ L  G + V V  
Sbjct: 396 EDRLLKLVCYTDHQLFERFHRYRTKNKA------SKSKALT-IKELKALHPGDYIVHVDY 448

Query: 640 NLLR 643
            + R
Sbjct: 449 GVGR 452



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 74/193 (38%), Gaps = 10/193 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G     +I        PV    A  Q E + D +    ++G 
Sbjct: 711 VLTLTATPIPRTLHFSLMGARDLSVIATPPPNRQPVTTEVATFQEETIRDAVAYELRRGG 770

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          + +   + +     R +  H ++   +  +I+ D    ++DVLV  N+
Sbjct: 771 QVFFVHNRVGEIDSIANLIMKLVPDARVIGAHGQMDGKKLEKIMVDFIHHEYDVLVSTNI 830

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + I  A   G     + L Q  GR  R+ N K   +   +T+ +    
Sbjct: 831 IESGLDIPNANTIIINRAHMFGL----SDLHQMRGRVGRS-NKKAFCFL--LTQPMSGLT 883

Query: 702 DETTRRREKQLEH 714
            E  +R +   E 
Sbjct: 884 PEARKRLQTLEEF 896


>gi|226227554|ref|YP_002761660.1| transcription-repair coupling factor [Gemmatimonas aurantiaca T-27]
 gi|226090745|dbj|BAH39190.1| transcription-repair coupling factor [Gemmatimonas aurantiaca T-27]
          Length = 1104

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 92/241 (38%), Gaps = 16/241 (6%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ-RPAIVMAPNKILAAQLYSEF 213
            A  ++LK +        + G+ GS     +A +  A+  R  +V+A     A +  ++ 
Sbjct: 15  PAFDRMLKALPGAGASLRVGGLAGSSDAVLVAGLARALPQRLVVVIADQLGDAERWLADL 74

Query: 214 KNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           +       V  +     + + E   P  +   E+  +    ++++  SA R LL      
Sbjct: 75  QALLDDVPVALYPPREGFGEVE---PHAEVAGERVET----LEKLGRSAVRILLT----- 122

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
             +S + +       + S   ++L+ GD     +L++ L    ++R  +      F V G
Sbjct: 123 --TSRAVLERTALPRALSGARLELRKGDQRRLSDLVTHLESIGFERVPMVEDVAQFSVRG 180

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
              +I+   + +   R+  +G+DI E+  F   T +  R+ E   I      V      +
Sbjct: 181 GIFDIYSFGMAE-PVRLEFWGDDIIELRHFDLNTQRSTRDAELALILPVDGRVQMAEETD 239

Query: 394 T 394
            
Sbjct: 240 E 240



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 74/205 (36%), Gaps = 17/205 (8%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEIN 576
            L    + ++ATP    L Q    + +  +    P         +      +  + + I+
Sbjct: 712 KLSTDVLTLTATPIPRTLHQSLAGLRDLTLMQTAPRDRSPVLTFVEPFDDAL--IEEAIS 769

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFD 634
               +G ++          E + ++L     R R    H ++K  E  +++R    G+ D
Sbjct: 770 RELDRGGQVFFVHNRIETIEAIADHLRRIVPRARVAVGHGQMKERELEKVMRQFVEGEVD 829

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV   ++  GLD+P    + +  AD  G  +    L Q  GR  R+             
Sbjct: 830 ILVSTLIVESGLDVPNANTMFVNRADHLGLAQ----LYQLRGRVGRSHRRAYCFLLVPDR 885

Query: 695 KSIQLAIDETTRRREKQLEHNKKHN 719
                 +DE   RR   LEH+ +  
Sbjct: 886 ------VDEDAERRLAVLEHHTELG 904


>gi|239906714|ref|YP_002953455.1| transcription-repair coupling factor [Desulfovibrio magneticus
           RS-1]
 gi|239796580|dbj|BAH75569.1| transcription-repair coupling factor [Desulfovibrio magneticus
           RS-1]
          Length = 1148

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 81/236 (34%), Gaps = 23/236 (9%)

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
            RM   A  ++ +    ++V++ + +       +    I+ + +G+ + +  +    V  
Sbjct: 93  RRMAFLAFAAMGKGPRVLLVTADNLLPKWPPPRALEGNILNVAVGEELPRDLIAEQAVLW 152

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            YKR  +    G F + GD ++IFP   E    R+  FG+ +E +  F   T + +  + 
Sbjct: 153 GYKRSPMVANPGEFALRGDILDIFPPGYES-PLRLEFFGDVLEAVRRFDAGTQRSLAELP 211

Query: 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              +   +  V     ++ A       L   +    +  R    QRL      +   +  
Sbjct: 212 EASLIPAAPAVLSETFMDEART-----LWETIAGTGELHRA-AKQRL-----ENALQVRD 260

Query: 436 TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
            G    +             E P  L  + PE +  FV +      ++        
Sbjct: 261 GGIWPGLFY-----------EKPVELSAWFPEGAAYFVCDPTKVKERLEEAEHAWR 305



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 85/240 (35%), Gaps = 25/240 (10%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +  S V IP I  +   +  R     ++  RL +   N               + ++AT
Sbjct: 716 RILSSDVAIPNIGLLILDEEQRFG--VKHKERLKAFKKNID------------ALTLTAT 761

Query: 532 PGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
           P    L+    G+    +I         V+          + + +     +  ++     
Sbjct: 762 PIPRTLQLSLSGVRGLSVIETPPPDRKTVDTALVERDEGFLREVLRRELDRQGQVFWVHN 821

Query: 591 TKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
             +  ED+T Y+       +V   H ++      E +     G+ D+LV  +++  GLD 
Sbjct: 822 RVQGLEDVTAYVKTLAPGAKVAMAHGQMSETALEEAMHGFWHGETDILVCTSIIESGLDF 881

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           P    + + +A   G  +    L Q  GR  R+       YA  +  SI+  + E  R+R
Sbjct: 882 PRANTLIVDNAHMFGLGQ----LYQLRGRVGRSPRQ---AYAYFVVPSIEK-VPELARKR 933


>gi|90406882|ref|ZP_01215073.1| excinuclease ABC subunit B [Psychromonas sp. CNPT3]
 gi|90311924|gb|EAS40018.1| excinuclease ABC subunit B [Psychromonas sp. CNPT3]
          Length = 109

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 4/107 (3%)

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID----PILLEDAATTNISIDAQQ 752
           +Q AI  TT+RRE Q ++N  +NI PQ + + + +++             T+ +      
Sbjct: 1   MQKAIHITTQRRELQHQYNIDNNIVPQGLNKAVDDILQLGKRSPKKSRKGTSELWKKEAT 60

Query: 753 LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYF 799
              ++K     +  L KQM + A +L FE+AA++RDEI  L++    
Sbjct: 61  PVANEKTLLKQMVRLEKQMFVHAKDLEFEKAAQLRDEISELQAQLIL 107


>gi|154497003|ref|ZP_02035699.1| hypothetical protein BACCAP_01296 [Bacteroides capillosus ATCC
           29799]
 gi|150273402|gb|EDN00530.1| hypothetical protein BACCAP_01296 [Bacteroides capillosus ATCC
           29799]
          Length = 400

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 92/256 (35%), Gaps = 26/256 (10%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D       ++  +          + + GF       +   R  +    R    + SAT
Sbjct: 142 LMDHMKRRTVKLDKVETVVLDEADRMLDMGFI------HDVTRILDQIKSRKNLGLFSAT 195

Query: 532 PGSWELEQC---QGIIVEQIIRPTGLVDPPVEIR--SARTQVEDVYDEINLAAQQGL-RI 585
                ++     Q   VE ++RP     P ++        + + +   + L    G  R 
Sbjct: 196 ISREVMDISWVYQRDPVEIVVRPDEENKPDIQQYRIDLEGRGDKLETMVALLTHGGYERA 255

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           +    TK M + L+  L  R I  + +H +++   R + ++  R GK  VLV  ++   G
Sbjct: 256 IAFCNTKNMTDRLSGLLQMRGITAQAIHGDIQQRIREKTLQAFREGKMRVLVATDVAARG 315

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LDI +  +V   D   E         I  IGR  R     V         +  L +  T 
Sbjct: 316 LDIDDVDVVFNYDVPDE-----IEYYIHRIGRTGRAKRHGV---------AYSLVVGITE 361

Query: 706 RRREKQLEHNKKHNIN 721
           + + +Q+  N K +I 
Sbjct: 362 QMKMEQIAKNTKADIT 377


>gi|294674288|ref|YP_003574904.1| transcription-repair coupling factor [Prevotella ruminicola 23]
 gi|294471847|gb|ADE81236.1| transcription-repair coupling factor [Prevotella ruminicola 23]
          Length = 1122

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 82/232 (35%), Gaps = 17/232 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q AA+A  ++  ++  +   L G+  S        +    + P + +  +   A   Y +
Sbjct: 15  QVAALAHEIE--NAATRRIFLEGLLASSAPMLFGSLAAKCKSPILFILQDAEEAGYFYHD 72

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                    V +F S Y                 K   ++     +R      + +++  
Sbjct: 73  LTQLLGTRQVLFFPSSYRRAI-------------KYGQLDSASQILRTEVMTQI-DKSVF 118

Query: 273 IVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVC 332
           IV    +    +   ++ +   V ++ G  V   ++   L +  +   D     G F + 
Sbjct: 119 IVTYPEALAEMVVPKQTLNDRTVVIEKGQEVPVGDITKQLRELGFNEVDYVYEPGQFALR 178

Query: 333 GDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
           G  ++++ S+  +  +R+  FG+D+E +  F       +   + ++I     
Sbjct: 179 GSILDVY-SYSCEYPYRIDFFGDDVESVRTFQVEDQLSLDARDRVEIVPELE 229



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 17/196 (8%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     +I+       P++        E + + +N    +  
Sbjct: 693 TLTMSATPIPRTLQFSLVGARDLSVIQTPPPNRYPIQTEIHTFSPEIIAEAVNYEMSRNG 752

Query: 584 RILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++   V  +      +AE + +Y+ +  I +   H ++K  E  +II D     +D+L+ 
Sbjct: 753 QV-YFVNNRISDLQHIAEIIQKYVPDARICIG--HGQMKPEELEKIILDFSNYDYDILLS 809

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DIP    + I  A   G     + L Q  GR  R  N K   Y      S  
Sbjct: 810 TTIVENGIDIPNANTIIINGAHNFGL----SDLHQMRGRVGR-GNRKAFCYLLAPPLS-- 862

Query: 699 LAIDETTRRREKQLEH 714
            A++  +RRR + LE+
Sbjct: 863 -ALNPESRRRLEALEN 877



 Score = 40.8 bits (94), Expect = 0.99,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           TVL  +     +  L +  + V Y+     T +   I +DL  GK D+++G + L+ + +
Sbjct: 601 TVLAYQHFRTFSNRLKDMPVTVDYLTRARTTKDTNRIQKDLAEGKIDIIIGTHRLISKSV 660

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQT 674
              + GL+ I +  K G + +K  L Q 
Sbjct: 661 KFKDLGLLIIDEEQKFG-VSTKEKLRQM 687


>gi|325473854|gb|EGC77042.1| hypothetical protein HMPREF9353_01390 [Treponema denticola F0402]
          Length = 721

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 80/518 (15%), Positives = 172/518 (33%), Gaps = 66/518 (12%)

Query: 162 KGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNA 221
             I        + G++G      + + +   ++P +V+ P +  A  + ++       N 
Sbjct: 24  DEIDENSYPYNITGISGGLFGIFLTEYLYKTRKPVLVVVPTEKEAEAVRADLDFSGIENF 83

Query: 222 VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCI 281
           V     ++         P    + E+   +   ++    S T+    +    +    S +
Sbjct: 84  VL---PWWGSLAYRPISPTAPVFSERAEVLIRLLESGNESYTK---NKPPVFITCQRSFL 137

Query: 282 YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPS 341
             +   +   Q  V++  G S++   L   L    Y R     +RG F + G+ ++I  +
Sbjct: 138 TPVPPADYLKQNKVEIAAGSSLDILSLAELLSLWGYIRVPRVSVRGEFALRGEVLDICLA 197

Query: 342 H---LEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKY 398
                E  A+R+    + +E+I  F   +   +   + I  Y     +         +  
Sbjct: 198 SNSGSEKTAYRIQFDFDKVEKIKSFDIASQGSLEEYKKINFYPVKEVIWNDER----IDC 253

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
           +++ LK      E   ++++A  L++  T++ E         + +  S  L      + P
Sbjct: 254 LEKNLKTYSEFSENILKIIDA--LKEYKTFEGE---EIFYPLAFQKSSSVLEYAELNKIP 308

Query: 459 --PTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
              + ++     S + + E      +    +  +  RKA ++EY    P       L+FE
Sbjct: 309 VFYSDYDRQKNSSEILLREYMGLYKKTKTQFDENEKRKALISEY----PEPQ-RILLQFE 363

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
                   +I    T    E +                 DPP   RS    +  + +E+N
Sbjct: 364 SNVQKYNKSIYF-RTLAEQEDKNKTLKFK---------TDPP---RSFFGNIVYLREELN 410

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                   I +                          S+ + L   EI+ + R     + 
Sbjct: 411 NLLNDDWSIFVFAE-----------------------SDNQALRIEEILHEDR-----IK 442

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +    L  G  IP+  ++ I + +  G  R     ++T
Sbjct: 443 ILPYNLSGGFGIPDLKILVIHENEIFGRRRRIPKSVKT 480


>gi|258676573|gb|ACV87294.1| VASA DEAD-box protein [Phallusia mammillata]
          Length = 851

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 72/188 (38%), Gaps = 15/188 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSARTQVED---VYDEI 575
            T++ SAT      +     + E  +     R  G      ++     Q +    + + +
Sbjct: 572 HTLMFSATFPDEIQKLAHDFLREDFLFLTVGRIGGACSDVTQVVLQVDQGDKRNKLIELL 631

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A  G R L+ V TKR A+ L   L +       +H +    ER E +RD + GK  +
Sbjct: 632 ADVADTGSRTLVFVETKRSADFLACSLCQEGYPTTSIHGDRLQQEREEALRDFKSGKCPI 691

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
           LV  ++   GLDIP+   V   D   E         +  IGR  R  N       Y D+ 
Sbjct: 692 LVATSVAARGLDIPKVEHVVNYDLPSEV-----DEYVHRIGRTGRCGNLGRATSFYDDSA 746

Query: 694 TKSIQLAI 701
             S+  ++
Sbjct: 747 NASLARSL 754


>gi|319441663|ref|ZP_07990819.1| transcription-repair coupling factor [Corynebacterium variabile DSM
           44702]
          Length = 1231

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 22/230 (9%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
           A   P +V+      A  L +E         V  F ++ +    E   P   T  E+   
Sbjct: 51  AQHAPVLVITATGRQAEDLTAELTAMLGD-VVAQFPAW-ETLPHERLSPGIGTVAERMRV 108

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           ++    R+ H   + ++      V   ++ +  I  V        +L  G  ++  E+  
Sbjct: 109 LH----RLAHGELKVVVAPTRAAVQPVMAGLGDITPV--------RLAEGVELDFSEVQE 156

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV+  Y   D+   RG F   G  ++IFP   E +  RV  +G++I E+  F     + 
Sbjct: 157 CLVELGYTHADVVGRRGEFATRGGILDIFPGTGE-MPVRVDFWGDEISEVRVFSVGDQRT 215

Query: 371 IRNVE--TIKIYANSHYVTPRPTLNTAMKYIKE-----ELKMRLIELEKE 413
           +  V+   + ++     +        A    +E     EL   L ++ + 
Sbjct: 216 VPGVDPGEVLVHPVRELLITDAIAERAGVLARENAGNPELSDALDKISQH 265



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 74/202 (36%), Gaps = 19/202 (9%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
             + +SATP    LE     I E     + ++ PP +     T V   +D +    +  + 
Sbjct: 815  VLTMSATPIPRTLEMSMTGIREM----STILTPPEDRHPVLTYVGAQDDRHVAAAVRREL 870

Query: 581  -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
             +  ++       +  ED   ++ E     R +  H ++   +    ++     +FDVLV
Sbjct: 871  LRDGQVFYVHNRVKSIEDAAAHIRELVPEARVVVAHGQMSEEQLETTVQGFWDREFDVLV 930

Query: 638  GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               ++  GLDI     + + +A   G  +    L Q  GR  R+       +     +  
Sbjct: 931  CTTIVETGLDIANANTLIVENAHHMGLSQ----LHQLRGRVGRSRERAYAYFFYPKGEM- 985

Query: 698  QLAIDETTRRREKQLEHNKKHN 719
               + ET+  R + +  N    
Sbjct: 986  ---LTETSYDRLRTIAENNDLG 1004


>gi|145612307|ref|XP_367108.2| hypothetical protein MGG_07033 [Magnaporthe oryzae 70-15]
 gi|145019494|gb|EDK03722.1| hypothetical protein MGG_07033 [Magnaporthe oryzae 70-15]
          Length = 645

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 17/186 (9%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLV--------DPPVEIRSARTQVEDVYDE 574
            T++ SAT PG +  +  +  + + I    G V           +E++    ++  + D 
Sbjct: 359 QTLMFSATFPG-YIQQLARDFLKDYIFLSVGRVGSTSENITQRVMEVKHRDDKISHLLDL 417

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++     G   L+ V TKR A++L+++L  +N+    +H +    ER   +   R G+  
Sbjct: 418 LS--THGGGLTLIFVETKRNADELSDFLQNQNLPATSIHGDRTQRERERALEMFRTGRCP 475

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV   +   GLDIP    V   D             +  IGR  R  N+ +      + 
Sbjct: 476 ILVATAVAARGLDIPNVTHVINYD-----LPTDIDDYVHRIGRTGRAGNTGIATAFFDMK 530

Query: 695 KSIQLA 700
            +  +A
Sbjct: 531 DNSGVA 536


>gi|256372365|ref|YP_003110189.1| transcription-repair coupling factor [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008949|gb|ACU54516.1| transcription-repair coupling factor [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 1131

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 100/261 (38%), Gaps = 37/261 (14%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM-QRPAIVMAPNKILAAQLYSEFKN 215
           +A L++ + +  +    L   G      +A     +  R  +V+A     A  + ++ + 
Sbjct: 11  LAALVEELAATVEDPPALSAAG------VALAWHRLAPRRMVVVAEGDREAEAIANDLRW 64

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
           + P               P A +P  DT   +    +      R  A  S+++  D  +V
Sbjct: 65  WLPR-------------IPVALLPPWDTLPFERVVPSMGTTAARLRALASIVDPPDEGIV 111

Query: 276 SSVSCIYGIGSVESYSQMIVQLKI--GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
              +    +  + + +  + +L +  GD + + EL++ L    Y R+      G + V G
Sbjct: 112 VVTTVRAALTKLVASAARLERLIVARGDELVRDELITWLEDAGYVREPQVSAAGEYAVRG 171

Query: 334 DSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
             +++  P        R+ +FG++++ ++ F P T + + ++E ++++            
Sbjct: 172 SIVDVADPGLAS--PVRIDLFGDEVDRLAFFDPTTQRSVGDLERVELFPAREV------- 222

Query: 393 NTAMKYIKEELKMRLIELEKE 413
                 I  +L  +L  L   
Sbjct: 223 -----RIDTDLAKQLEALAAR 238



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 8/161 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
            +V+SATP    LE    GI    ++R   +   P+   +      V  V + I     +
Sbjct: 733 VLVLSATPIPRSLELSLVGIRDLSVLRTAPVDRHPILTHVGPFDPAV--VTEAIRRELLR 790

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++       R  E     + +     R +  H ++        +     G+ DVLV  
Sbjct: 791 EGQVFFVHNRVRDIEASARLVADLVPEARVLVAHGQLPPAALERTMAQFWHGEADVLVAT 850

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
            ++  G+D+     + +  A++ G  +    L   +GR+ R
Sbjct: 851 TIVENGIDLARANTLIVDRAEQLGLAQ-LHQLRGRVGRSGR 890


>gi|301335326|ref|ZP_07223570.1| transcription-repair coupling factor [Chlamydia trachomatis L2tet1]
 gi|301336312|ref|ZP_07224514.1| transcription-repair coupling factor [Chlamydia muridarum
           MopnTet14]
          Length = 1081

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 87/238 (36%), Gaps = 15/238 (6%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +   +   L+  +    ++F +AK+ + ++R  +V+         ++ +         +E
Sbjct: 16  LKKTKLPLLVENLHSGARSFVIAKLFKELRRSIVVIT-TPTKLDDVFEDLSTLLKETPLE 74

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
           +  S  D       +      + K   I   + + +              + +  + +  
Sbjct: 75  FPASEIDLSPKLVNIDA----VGKRDHILYSLQKQQTPVIC---------ITTLKALLER 121

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
             S ES  Q  ++L++G+ ++   LL       Y+ + +   +G F   G  ++IFP   
Sbjct: 122 TPSPESLIQDHLELRVGEELDPDTLLDLCKNLGYRHEALAREKGDFAFRGGIVDIFPLSS 181

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
            +  +R+  +G+ I  I  + P        +  I +   +  +      ++ + Y + 
Sbjct: 182 PE-PFRIEFWGDRIASIRAYNPSDQLSTGKLSQITLSPATAIIPTDKLSHSLLDYFEA 238



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 62/178 (34%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + VSATP    L     G     +I    L   PV         E +   I     +G 
Sbjct: 708 CLTVSATPIPRTLYLSLSGARDLSLITMPPLDRLPVSTFVMEHSEETLSAAIRHELLRGG 767

Query: 584 RILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++ +         R+ E +   + E  I +   H ++ + E   I    +  + +VLV  
Sbjct: 768 QVYVIHNRIESIFRLGETIRTLIPEARIGIA--HGQMHSEELASIFYKFKTQQTNVLVAT 825

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            L+  G+DIP    + I  ADK G       L Q  GR  R        +  +    +
Sbjct: 826 ALIENGIDIPNANTILIDHADKFG----MADLYQMKGRVGRWNKKAYCYFLVSHLDRL 879



 Score = 44.7 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 15/132 (11%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           +++RE+SE+++    + L ++    +             S+    H +++  F     Y 
Sbjct: 507 RRSRELSEKSVILYAEKLIQMEAQRST----------ANSFIYPPHGEEVIKFAESFPYE 556

Query: 149 PSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ  AI Q+    +  +   +L+ G  G GKT   M   ++A+   Q+  IVM P  
Sbjct: 557 ETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAVCDGQKQVIVMVPTT 616

Query: 204 ILAAQLYSEFKN 215
           ILA Q +  F  
Sbjct: 617 ILANQHFETFSQ 628


>gi|317153444|ref|YP_004121492.1| transcription-repair coupling factor [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943695|gb|ADU62746.1| transcription-repair coupling factor [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 1160

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 70/361 (19%), Positives = 121/361 (33%), Gaps = 50/361 (13%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGV-TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           P AI   + G     K Q L    +G G    +A+ +    R A+++ P      Q+ + 
Sbjct: 6   PGAITDFIAG-----KTQTLRVFKSGPGTQAFIARRMLDHGRSAVIVVPGAQEFKQMRA- 59

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM----RHSATRSLL- 267
                          +    QPE        +I     ++ Q D      R +A  +L  
Sbjct: 60  -----------LLALFSHGAQPEHAPAWERDWIFLPPYLSRQPDAQAWSERWAALYALTY 108

Query: 268 -ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
            +R   ++++  + +          +  V L  G+ +    LL  LV   Y R+ +    
Sbjct: 109 GKRPCGVLMTVDNLLPHWPEASVLRENWVSLTRGEEMSPDILLEQLVAWGYVRRKLVSAP 168

Query: 327 GTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
           G   + GD ++I  P +  D+  R+  FG+ IEEI  F P T +   ++    +   S  
Sbjct: 169 GEMAMRGDILDIHAPGY--DLPLRLEFFGDAIEEIRLFDPATQRSRADLTEAVLLPVSPG 226

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
           +T       A      E+  RL    + G   E+  L          L+   +      Y
Sbjct: 227 ITSGGYAAQA-----REVWNRLRRTGEIGAGDESALLG--------RLDAGDAFVWPGMY 273

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK-ATLAEYGFRL 504
                G            Y PEDS+  +        ++    +         L + G R 
Sbjct: 274 YSASVGVES---------YFPEDSVYLLSSGGALRARLEDQDQAWRDSVDEELRQKGVRW 324

Query: 505 P 505
           P
Sbjct: 325 P 325



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 66/187 (35%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+    GI    +I    L   PVE          +   ++   ++G 
Sbjct: 761 VLTLTATPIPRTLQLSLSGIRGLSVIETPPLDRKPVETAITERDPVALKAALHRELERGG 820

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E + E++ E     R    H ++      + +R    G+ DVLV   +
Sbjct: 821 QVYWVYNRVNGLERVVEFVRELAPDARVGMAHGQMSEKGLEDAMRGFWHGELDVLVCTAI 880

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD P    + +  A   G  +    L Q  GR  R+       +           +
Sbjct: 881 VESGLDFPNANTLIVDQAQLFGLGQ----LYQLRGRVGRSDRQAYAYFVVPSIDD----L 932

Query: 702 DETTRRR 708
            E  R+R
Sbjct: 933 SEMVRKR 939


>gi|227832736|ref|YP_002834443.1| transcription-repair coupling factor [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262182774|ref|ZP_06042195.1| transcription-repair coupling factor [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453752|gb|ACP32505.1| transcription-repair coupling factor [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 1212

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 88/246 (35%), Gaps = 24/246 (9%)

Query: 161 LKGIHS--REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           LKG+ S   E    + G+    + + +  +  A   P +V+  +   A  L +E      
Sbjct: 15  LKGLASQVGEASLHITGI-DQARPWAIGTL--AHHAPVLVVTASGREAEDLTAELTAMLG 71

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
              V YF ++ +    E   P  D   +            R      +      +VV+S 
Sbjct: 72  D-KVAYFPAW-ETLPHERLSPAADIVGK------------RARVLDLVGAGKAQVVVTSA 117

Query: 279 SC-IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
                 I S        + LK  D  E   +LS L  + YK  D+   RG +   G  ++
Sbjct: 118 RGYCQPILSKVEGR-APIFLKEEDEHELSHILSELEFRAYKHVDMVAKRGEYATRGGILD 176

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE--TIKIYANSHYVTPRPTLNTA 395
           +FP    D   RV  +G++I +I +F     + I  +E   + IY              A
Sbjct: 177 VFP-TTSDYPVRVEFWGDEITDIRQFSVADQRAIPEIEVGEVAIYPARELPITNEVAARA 235

Query: 396 MKYIKE 401
            +  ++
Sbjct: 236 RELARK 241



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 70/204 (34%), Gaps = 23/204 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP +     T V   ED      +  + 
Sbjct: 789 VLTMSATPIPRTLEMSMAGIREM----STILTPPEDRHPVLTYVGAYEDKQVAAAIRREL 844

Query: 581 -QGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +  ++          E    +L + + E  I V   H ++        ++     +FDV
Sbjct: 845 LRDGQVFFIHNKVADIEKKARELRDLVPEARIVVA--HGQMNEDVLERTVQGFWDREFDV 902

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  GLDI     + + +A   G  +    L Q  GR  R+       +      
Sbjct: 903 LVCTTIVETGLDIANANTLIVENAHHMGLSQ----LHQLRGRVGRSRERGYAYFLYPKG- 957

Query: 696 SIQLAIDETTRRREKQLEHNKKHN 719
                + ET+  R   +  N    
Sbjct: 958 ---ATLTETSYDRLATIAQNNDLG 978


>gi|15834748|ref|NP_296507.1| transcription-repair coupling factor [Chlamydia muridarum Nigg]
 gi|270284915|ref|ZP_06194309.1| transcription-repair coupling factor [Chlamydia muridarum Nigg]
 gi|270288942|ref|ZP_06195244.1| transcription-repair coupling factor [Chlamydia muridarum Weiss]
 gi|7190159|gb|AAF39002.1| transcription-repair coupling factor [Chlamydia muridarum Nigg]
          Length = 1080

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 82/219 (37%), Gaps = 21/219 (9%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           +   +   L+  +    K F +AK+ + ++R  +++         L+ +       + +E
Sbjct: 16  LKDSKLPSLVENLHSGAKAFIVAKLFKELRRSIVIIT-TPARVDDLFEDLTTLLKESPLE 74

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV---SSVSC 280
           +  S  D       +   D   +++  +               L++    VV   +  + 
Sbjct: 75  FPTSEIDLSPKLVNI---DAVGKRDHILYS-------------LQKQCAPVVCITTLKAL 118

Query: 281 IYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFP 340
           +    S ES     ++LK+G+ ++   L+       Y+ + +   +G F   G  ++IFP
Sbjct: 119 LERTPSPESLLSDHLELKVGEELDPDTLVDLCKNLGYRHEALAREKGDFAFRGGIVDIFP 178

Query: 341 SHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
               +  +R+  +G+ I  I  + P        +  I I
Sbjct: 179 LSSSE-PFRIEFWGDRISSIRSYNPSDQLSTGKISQITI 216



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 61/178 (34%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + VSATP    L     G     +I    L   PV         E +   I     +G 
Sbjct: 708 CLTVSATPIPRTLYLSLSGARDLSLITMPPLDRLPVSTFVMEHTEETLSAAIRHELLRGG 767

Query: 584 RILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++ +         R+ E +   + E  I V   H ++ + E   I    +  + +VLV  
Sbjct: 768 QVYVIHNRIEGIFRLGETIRTLIPEARIGVA--HGQMHSDELANIFYKFKTQQTNVLVAT 825

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            L+  G+DIP    + I  ADK G       L Q  GR  R        +       +
Sbjct: 826 ALIENGIDIPNANTILIDHADKFG----MADLYQMKGRVGRWNKKAYCYFLVPHLDRL 879



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 15/132 (11%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           +++RE+SE+++    + L ++    +             S+    H +++  F     Y 
Sbjct: 507 RRSRELSEKSVILYAEKLIQMEAQRST----------ANSFIYPTHGEEVIKFAESFPYE 556

Query: 149 PSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ  AI Q+    +  +   +L+ G  G GKT   M   ++A+   Q+  IVM P  
Sbjct: 557 ETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVKAVCDGQKQVIVMVPTT 616

Query: 204 ILAAQLYSEFKN 215
           ILA Q +  F  
Sbjct: 617 ILANQHFETFSQ 628


>gi|296178353|dbj|BAJ07808.1| putative vasa protein [Oxycomanthus japonicus]
          Length = 851

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 87/228 (38%), Gaps = 17/228 (7%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           F+D   +++ + + +   +  R     + GF     M+               T++ SAT
Sbjct: 555 FIDRQKISVEKCNYLVLDEADRM---LDMGFG--PAMERLVNNPNMPKKGDRQTLMFSAT 609

Query: 532 PGSWELEQCQGIIVEQIIRPTGLV---DPPVEIRSART---QVEDVYDEINLAAQQGLRI 585
                 ++    +   +    G +    P VE R       Q +D   EI   + +  + 
Sbjct: 610 FPDEVQKRASEYLNNYLFLTIGRIGGATPDVEQRVIEVDQFQKKDKLIEILHDSPEDDKT 669

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ L   L +       +H +    ER E +RD + G+  V+V  ++   G
Sbjct: 670 LVFVETKRSADFLASLLSQSGFPTTSIHGDRMQKEREEALRDFKTGRAPVMVATSVAARG 729

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADT 692
           LDIP+   V   D          +  +  IGR  R  N  K   + D+
Sbjct: 730 LDIPKVKHVINYD-----LPEDISEYVHRIGRTGRVGNLGKATSFFDS 772


>gi|227501542|ref|ZP_03931591.1| possible transcription-repair coupling factor [Corynebacterium
           accolens ATCC 49725]
 gi|227077567|gb|EEI15530.1| possible transcription-repair coupling factor [Corynebacterium
           accolens ATCC 49725]
          Length = 1213

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 74/207 (35%), Gaps = 19/207 (9%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
           A   P + +      A  L +E         V  F S+ +    E   P  D  I K + 
Sbjct: 47  AHHAPVLAVTATSREAEDLTAELTAMMGD-KVAMFPSW-ETLPHERLSPGVDI-IGKRAQ 103

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           +   ID +R   T +       +    +  I G   V         L+        +++ 
Sbjct: 104 VLHNIDDLRIIVTAA-----RGLSQPILQDIEGRAPV--------HLEEDHEYNFDDVVR 150

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
           SL  + YK  D+   RG F   G  I++FP+ L D   RV  +G+++ +I +F     + 
Sbjct: 151 SLEFRAYKHVDMVAKRGEFATRGGIIDVFPTTL-DYPVRVEFWGDEVTDIRQFSVADQRT 209

Query: 371 IRNVE--TIKIYANSHYVTPRPTLNTA 395
           I  +E   + I+              A
Sbjct: 210 IPEIEVGRVDIFTARELPITDAVAQRA 236



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 70/204 (34%), Gaps = 23/204 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ- 580
            + +SATP    LE     I E     + ++ PP +     T V   ED      +  + 
Sbjct: 790 VLTMSATPIPRTLEMSMAGIREM----STILTPPEDRHPVLTYVGAYEDKQVAAAIRREL 845

Query: 581 -QGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +  +           E    +L + + E  I V   H ++      + ++     ++DV
Sbjct: 846 LRDGQTFFIHNKVSDIEKKARELRDLVPEARIVVA--HGQMNEDVLEKTVQGFWDREYDV 903

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  GLDI     + + +A   G  +    L Q  GR  R+       +      
Sbjct: 904 LVCTTIVETGLDIANANTLIVENAHHMGLSQ----LHQLRGRVGRSRERGYAYFLYPKG- 958

Query: 696 SIQLAIDETTRRREKQLEHNKKHN 719
                + ET+  R   +  N    
Sbjct: 959 ---ATLTETSYDRLATIAQNNDLG 979


>gi|66363286|ref|XP_628609.1| abstrakt protein SF II helicase + Znknuckle C2HC (PA)
           [Cryptosporidium parvum Iowa II]
 gi|46229614|gb|EAK90432.1| abstrakt protein SF II helicase + Znknuckle C2HC (PA)
           [Cryptosporidium parvum Iowa II]
          Length = 570

 Score =  104 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 85/226 (37%), Gaps = 19/226 (8%)

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536
            VT+ Q       +  R   L E GF      ++    F+ +   R  T++ SAT     
Sbjct: 274 KVTLQQCEYFCMDEADR---LTEQGF-----DEHLRYIFDSFYERR-QTVLFSATMPRKT 324

Query: 537 LEQCQGIIVEQII----RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
            E  Q  +++ ++    R        ++      Q   +   ++   +   R+L+    K
Sbjct: 325 QEFAQTALIDPVVVNVGRAGAANLRVIQEFEYVRQERRLVSLLSCLQKTAPRVLIFSENK 384

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           +  +++ EYL  + +    +H  +   +R   I   R G+ DVLVG ++  +GLD     
Sbjct: 385 KDVDEIHEYLLLKGVNAVAIHGGLTQEQRFRSIEKFRNGEMDVLVGTDVASKGLDFENIQ 444

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            V   D  KE       + +  IGR  R  +  V   + D      
Sbjct: 445 HVINFDMPKE-----IENYVHRIGRTGRGGSVGVSTTFIDNTLPEA 485


>gi|285808213|gb|ADC35747.1| transcription-repair coupling factor [uncultured bacterium 293]
          Length = 1139

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 89/240 (37%), Gaps = 21/240 (8%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH----NAVEYFVSY 228
           + G+TG+ +       + A +RP +V+ P +     +  +            +V  F S 
Sbjct: 30  VSGLTGTARLLI---PLLASERPLLVVVPQEKDVEPVCDDLATLAAEAGRFRSVLAFPSP 86

Query: 229 YDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVE 288
                P   +PR      + +S+     R R  A          +V S    +       
Sbjct: 87  G---PPFRGLPRHADASLRRASVLLAAARGRLEA----------VVASPSGLLRPTLRRX 133

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
            +   +  L+ G+ +  + LL +L +  Y+R+D  +  G F   G  +++FP  +     
Sbjct: 134 JFETRVFTLQKGEDLIPEMLLEALEEGGYRREDPVVAPGQFTRRGGVLDLFPPDM-RQPL 192

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FG+ +E +  F P + + +   + +++        PR         ++E    R  
Sbjct: 193 RLEFFGDTLESLRRFDPDSQRTVGEEDQVEVGPLLDVFAPRSVQERLPALLRERFAARAE 252



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 69/191 (36%), Gaps = 11/191 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L+    GI    +I         ++    +   + +   +     +  
Sbjct: 743 CLTLSATPIPRTLQMGLSGIRDMSVIETPPKDRLAIQTSIVKFSTDTITSAVRQELAREG 802

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++            +   +       R +  H ++   E    +     G+ DVLV   +
Sbjct: 803 QVFFVHNRVESIYSVAALIQRLVPEARVVVAHGQMGEGELERNMLAFVEGRGDVLVATTI 862

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + +  AD+ G  +    L   +GR+ R   + +++  DT+       +
Sbjct: 863 IENGLDIPRANTLIVNRADRYGLAQ-LXQLRGRVGRSDRRAYAWLMVPPDTV-------L 914

Query: 702 DETTRRREKQL 712
            E  R+R   +
Sbjct: 915 SEIARKRLAAM 925


>gi|298528164|ref|ZP_07015568.1| transcription-repair coupling factor [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511816|gb|EFI35718.1| transcription-repair coupling factor [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1144

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 58/307 (18%), Positives = 113/307 (36%), Gaps = 44/307 (14%)

Query: 206 AAQLY-SEFKNFFPHNAVEYFVSYYDYYQ-------PEAYVPRTDTYIEKE------SSI 251
           A Q+Y +E+     H+AV       D  Q               D + E           
Sbjct: 29  ATQIYLAEYLRRQGHDAVLVLPPNSDVKQYMQLAEIFSRTSMEKDKFWESSWFFLPSPGH 88

Query: 252 NEQIDRMRHSAT--RSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELL 309
           + +    R  A+    + ++    V+++ S +  +   +    + + L  G+     ++L
Sbjct: 89  SSRPAWGRIWASMFGLMQQKGKAAVLTADSMLNYLPPPDVVRDVFLLLMTGEETNPGDIL 148

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTG 368
             LV+  Y R  +    G     GD ++I+ P +      R+  FGN +E I  F P++ 
Sbjct: 149 DKLVEWGYVRVFMVTSPGEVSQRGDILDIYAPGY--PHPLRLEFFGNHLESIRTFEPVSQ 206

Query: 369 QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           + IR +E   I   S        +  A        + +   L+  G +  ++ L QR+ +
Sbjct: 207 RSIRQLEECLILPVSPSPMEDHLVKQA--------RDKADYLKSTGEI--SRELRQRLEF 256

Query: 429 DLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISG 485
               LE          Y   L   +PGE    + E++PED+  F+ ++     ++ +   
Sbjct: 257 ---KLEEKDPF-----YPAGLFYSSPGE----ISEFLPEDAHFFLVDTARLRTSLEEEEW 304

Query: 486 MYRGDFH 492
             +    
Sbjct: 305 KLKQWAE 311



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 64/187 (34%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+    GI    +I    L   PVE        + +   +     +  
Sbjct: 750 VLTLTATPIPRTLQLSVSGIRTLSVIETPPLDRKPVESSIIERDRDFLRHALQRELDRQG 809

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  E + EY+ +     R    H ++      E +      + D+LV   +
Sbjct: 810 QVFWVYNRVQGLESVMEYVQDLMPEARVDMAHGQMPERILEENMHRFWHHEIDILVCTAI 869

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD P    + +  A   G  +    L Q  GR  R+       +           +
Sbjct: 870 IESGLDFPRANTLIVDQAHMFGLGQ----LYQLRGRVGRSQEQAYAYFIVPSV----REL 921

Query: 702 DETTRRR 708
            E +R+R
Sbjct: 922 GEKSRKR 928


>gi|217978360|ref|YP_002362507.1| transcription-repair coupling factor [Methylocella silvestris BL2]
 gi|217503736|gb|ACK51145.1| transcription-repair coupling factor [Methylocella silvestris BL2]
          Length = 1176

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 79/468 (16%), Positives = 151/468 (32%), Gaps = 52/468 (11%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP-------AIVMAPNKILAAQ 208
           AIA+L KG         L  +      F +A +  A+ R         + +A +   AA 
Sbjct: 7   AIAELSKG-----GSLTLSSLADGFDAFCVADLTRALARESEERALALVHVARDSQRAAS 61

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
               F    P   +  F  +    QP   V    +   +   +  ++ R R SA     +
Sbjct: 62  FAEAFAFAAPDIELLDFPGW--DCQPYDRVSPNASVTARRMIVLSRLARSRSSA-----D 114

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
           R   +  +  + I  +  V   +        G+ V+   L   L    + R  +    G 
Sbjct: 115 RPRILSTTIKALIQRVPPVRQMAADTFSAAPGNVVDLNALTLWLETNGFVRASVVREAGE 174

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           + V G  ++++   +     R+  FG+ +E I  F P + + +  +  + +   S     
Sbjct: 175 YAVRGGILDLYAPGMA-QPVRLDFFGDALESIRAFDPESQRTLFPLRGLDLVPMSEVQLT 233

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
              +             R   +   G          R     E +         E++   
Sbjct: 234 SDAMRRF----------RQAYVATFGAQT-------RGDSLYEAISEGRRPAGHEHWLPL 276

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLFVD--ESHVTIPQISGMYRGDFHRKATL----AEYGF 502
                  +   T+ +Y    + L +D         +I+ +      RK       A+ G+
Sbjct: 277 FY-----DGLDTVLDYAGR-APLVLDSLSDEAARERIALIEDYYDARKTAYDADPAQAGY 330

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           + P   D   L  EEW        V+  TP + E E  +G++++   +P G    P    
Sbjct: 331 K-PLKPDTLYLTREEWAQRLGRARVIRTTPFA-EPEGSRGLVIDCGSKP-GRSFAPERAD 387

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
            A    +   D +      G R+++   +    E L   L +  +   
Sbjct: 388 EAANVFQAAVDHVKALQSGGARVIVAAWSDGSRERLAHVLADHGLTGA 435



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 71/178 (39%), Gaps = 9/178 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  T  VD    +R+  T  + +   + +     +
Sbjct: 777 HVLTLSATPIPRTLQLALTGVRELSIIATPPVDRLA-VRTFITPFDTLLVREALLRERYR 835

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +           +D   +L +    V+++  H ++   E  + +     G+FDVL+  
Sbjct: 836 GGQSFYVCPRIDDIQDAAAFLRQHVPEVKFVIAHGQMPATELEDKMSAFYDGQFDVLLST 895

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     +++
Sbjct: 896 AIVESGLDIPTANTLIVHRADMFGLAQ----LYQLRGRVGRSKVRAYALFTVPAERAM 949


>gi|45382659|ref|NP_990039.1| probable ATP-dependent RNA helicase DDX4 [Gallus gallus]
 gi|9967268|dbj|BAB12337.1| Cvh [Gallus gallus]
          Length = 662

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 97/266 (36%), Gaps = 38/266 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL--R 514
            P  L +         +++  +++ ++  +   +  R     + GF L    D + L   
Sbjct: 369 TPGRLLD--------IIEKGKISLVEVKYLVLDEADRM---LDMGFGL----DMKKLISY 413

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR--------PTGLVDPPVEIRSART 566
            E  +  R  T++ SAT            +    I             V   +      +
Sbjct: 414 PEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSDVQQNILQVPRLS 473

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + + + +      G R ++ V TK+ A+ L  +L + N+    +H + +  ER   +R
Sbjct: 474 KRDKLIEILQSTG--GERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALR 531

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-K 685
           D R GK  +LV  ++   GLDI     V   D        +    +  IGR  R  N+ K
Sbjct: 532 DFRSGKCQILVATSVASRGLDIENVQHVINFD-----LPNTIEDYVHRIGRTGRCGNTGK 586

Query: 686 VILYADTITK-----SIQLAIDETTR 706
            + + D  +      S+   +  T +
Sbjct: 587 AVSFFDDQSDGHLVQSLLKVLSRTQQ 612


>gi|316968374|gb|EFV52655.1| eukaryotic initiation factor 4A-III [Trichinella spiralis]
          Length = 970

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 58/262 (22%), Positives = 103/262 (39%), Gaps = 30/262 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVE----------DVY 572
             +V+SAT     LE     + E +       +  +E IR     VE          D+Y
Sbjct: 224 QVVVISATLPHEILEMTGKFMTEPVRILVKRDELTLEGIRQYFVHVEREDWKFETLCDLY 283

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I ++     + ++   T+   E L E + E N  V  +H E+   +R E++R  R G 
Sbjct: 284 DSITIS-----QAVVFCNTRHKVEWLDEKMKESNFTVGAIHGEMDQKDRNEVVRKFRDGI 338

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
           + VL+  ++   GLDIP   LV   D        ++ + +  IGR+ R       I +A 
Sbjct: 339 YRVLISTDVWSRGLDIPGVSLVINYDV-----PTNREAYLHRIGRSGRYGRKGCAINFAT 393

Query: 692 TITKSIQLAIDETTRRREK-QLEHN--KKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           T      L I E+    +  ++  N    + +   + K  I  V + I   +      ++
Sbjct: 394 TEDIPTLLEI-ESYYGTQIDEMPMNDILVNRLVLAATKNGIRNVQENISYINIDRPFSAM 452

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
             ++    ++     +  L KQ
Sbjct: 453 KLKKD--VEEDLVDQI--LEKQ 470


>gi|198476381|ref|XP_001357350.2| GA17489 [Drosophila pseudoobscura pseudoobscura]
 gi|198137669|gb|EAL34419.2| GA17489 [Drosophila pseudoobscura pseudoobscura]
          Length = 578

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 98/297 (32%), Gaps = 43/297 (14%)

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           ++    R     +Y    +   G+    +N S  +        P  L +++ E + +  D
Sbjct: 250 QIYHEARKFSHESYLKISILYGGTSVKYQNESIMMGCHLLIATPGRLLDFV-ERAFITFD 308

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           ++   +                + + GF        R +        +  T++ SAT   
Sbjct: 309 DTRFLV----------MDEADRMLDMGF----SESMRKIVTHCTMRAQHQTLMFSAT-FP 353

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR---------- 584
            E+++  G  +   I         V I        DV   I    +   R          
Sbjct: 354 QEIQRMAGEFLNNYIF--------VTIGVVGGACSDVKQTIYEVTKYNKRRKLIDILKES 405

Query: 585 ---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
               ++ V TKR A+ L  YL E       +H +    +R + +RD + GK  VL+  ++
Sbjct: 406 ADGTIVFVETKRGADFLASYLSEAEHPTTSIHGDRLQSQREQALRDFKTGKMKVLIATSV 465

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D  K     +    +  IGR  R  N+     + D    S 
Sbjct: 466 ASRGLDIKNVKHVVNYDMPK-----TIDDYVHRIGRTGRVGNNGRATSFFDPDQDSA 517


>gi|146329248|ref|YP_001209905.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
 gi|146232718|gb|ABQ13696.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
          Length = 442

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 103/284 (36%), Gaps = 45/284 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         V E H+ + QI  +   +  R     + GF      D   +  +
Sbjct: 132 TPGRLLD--------HVREGHLDLSQIRYLVLDEADRM---LDMGF----SDDMHAIIKQ 176

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
                   TI+ SAT             V +I          + I    + +E++    +
Sbjct: 177 CPQNR--QTIMSSAT---------WDGNVGKIAAGFTHNAEKIIIAPETSHIEEISYFTD 225

Query: 577 LAAQQG------------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             A +              + ++   TK   E +  +LYE   + +++H +++  +R  I
Sbjct: 226 DQAHKNAVLDRLLADEAVTQCIVFTATKSTTETVAHHLYENGFQAQFLHGDLQQQKRNRI 285

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I   R G+ +VLV  ++   G+DIP    V   D       R     +  IGR+ R   S
Sbjct: 286 IERFRNGQINVLVATDIAARGIDIPAISHVINYD-----LPRQSEDYVHRIGRSGRAGRS 340

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            V L   ++T   + A+    R  ++ ++ +    + P  V  K
Sbjct: 341 GVALNLVSLTD--RAAMAHIERYLKRAIKTDVLEGLEPTKVPSK 382


>gi|303245477|ref|ZP_07331761.1| transcription-repair coupling factor [Desulfovibrio fructosovorans
           JJ]
 gi|302493326|gb|EFL53188.1| transcription-repair coupling factor [Desulfovibrio fructosovorans
           JJ]
          Length = 1150

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 93/310 (30%), Gaps = 33/310 (10%)

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
            F  A+ +    + A+V+ P      ++ S      P    + + +        A    +
Sbjct: 28  AFLAAEALSR-GQSAVVVTPGIHELTKIASLLDLVAPKPKRQLWGASSMSLPSYAPGLPS 86

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
             +  +         RM   A  S+      ++ S+ + +     +++    I+ + +G+
Sbjct: 87  GAFWAR---------RMAFLAFASMGTGPRVLLFSADNLLPKWPPLQALEGNILTVAVGE 137

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
            + +  +    V   YKR  +    G F + GD ++IFP    D   R+  FG+ +E   
Sbjct: 138 ELPRDLIAEQAVLWGYKRAPMVTNPGEFSLRGDILDIFPPGY-DTPLRLEFFGDTVETAR 196

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
            F   + + +  +    +   +  V        A               E      E  R
Sbjct: 197 RFDAGSQRSLAELTEAVLLPAAPAVLSETFKEQA-----------AAMWETIAGTGELHR 245

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
             +            G    +         R             P+D++  VD+      
Sbjct: 246 TAKARLETAVEAGDGGIWPGL------FYERPVELAAWC-----PDDAVWIVDDPTRVKE 294

Query: 482 QISGMYRGDF 491
           ++        
Sbjct: 295 RLEETEHAWR 304



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 82/240 (34%), Gaps = 25/240 (10%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +  S VTIP I  +   +  R     ++  RL +   N               + ++AT
Sbjct: 716 RILSSDVTIPNIGLLILDEEQRFG--VKHKERLKAFKKNID------------ALTLTAT 761

Query: 532 PGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
           P    L+    G+    +I         VE          + + +    ++  ++     
Sbjct: 762 PIPRTLQLSLSGVRGLSVIETPPAERKTVETALVERDPAFLREVLRRELERQGQVFWVHN 821

Query: 591 TKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
             +  E++  ++     + +    H ++      E +     G+ D+LV  +++  GLD 
Sbjct: 822 RVQGLEEVAAFVRTLAPQAKVAMAHGQMSETGLEEAMHGFWHGETDILVCTSIIESGLDF 881

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           P    + + +A   G  +    L Q  GR  R+       +     +     + E  R+R
Sbjct: 882 PRANTLVVDNAHMFGLGQ----LYQLRGRVGRSPRQAYAYFVVPSIER----VPELARKR 933


>gi|313148344|ref|ZP_07810537.1| transcription-repair coupling factor [Bacteroides fragilis 3_1_12]
 gi|313137111|gb|EFR54471.1| transcription-repair coupling factor [Bacteroides fragilis 3_1_12]
          Length = 1128

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           +E    P + +  +   A   Y +         + +F S +          R+  Y +K+
Sbjct: 52  VEKSPCPFVFILGDLEEAGYFYHDLTQVLGTEQILFFPSSFR---------RSVKYGQKD 102

Query: 249 SSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           ++     + +R      L +     CIV    +    + S +  S+  ++L +G+ V+  
Sbjct: 103 AAN----EILRTEVLSRLQKGEQGLCIVTYPDALAEKVVSRQELSENTLKLHVGEKVDTG 158

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
            +   L    ++  D     G + V G  I++F S   +  +R+  FG+D+E I  F   
Sbjct: 159 FITDVLHSYGFEYVDYVYEPGQYAVRGSIIDVF-SFSSEYPYRIDFFGDDVESIRTFEVE 217

Query: 367 TGQKIRNVETIKIYAN 382
           +       E+I I  +
Sbjct: 218 SQLSKEKKESIVIVPD 233



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +   +V  + D IN    +
Sbjct: 712 TLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFSEEV--IADAINFEMSR 769

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++ L         +L   +  R  + R+   H +++ +E  +II       +DVL+  
Sbjct: 770 NGQVFLVNNRIANLPELKAMILRRIPDCRIAIGHGQMEPVELEQIIFGFVNYDYDVLIAT 829

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 830 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLSSLTP 885

Query: 700 AIDETTRRRE 709
              E  RR +
Sbjct: 886 ---EAKRRLQ 892


>gi|218507843|ref|ZP_03505721.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
           Brasil 5]
          Length = 326

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 78/237 (32%), Gaps = 28/237 (11%)

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND-----CIVVSSVSCIYGIGSVE 288
           P   +P  D       S +      R +A   L+          ++V++ + +  +   +
Sbjct: 3   PVLTLPAWDCLPYDRVSPSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQKVAPQD 62

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
               +    + G+ +   +L   L +  + R       G + V G  +++F    E+   
Sbjct: 63  VIESLSFSARPGNQLRMDDLAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGSEE-PV 121

Query: 349 RVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLI 408
           R+  FG+ +E I  F P + +    V ++ +   S       T++            R  
Sbjct: 122 RLDFFGDTLESIRSFDPASQRTTGQVRSLDLNPMSEVTLTPDTISRF----------RKN 171

Query: 409 ELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYI 465
            L   G       L   ++              +E++          E   T+F+Y+
Sbjct: 172 YLSAFGATTRDDALYLAVS-------EGRRYPGMEHWLPLFY-----EKLDTVFDYL 216


>gi|255010538|ref|ZP_05282664.1| putative transcription-repair coupling factor [Bacteroides fragilis
           3_1_12]
          Length = 1125

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           +E    P + +  +   A   Y +         + +F S +          R+  Y +K+
Sbjct: 49  VEKSPCPFVFILGDLEEAGYFYHDLTQVLGTEQILFFPSSFR---------RSVKYGQKD 99

Query: 249 SSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           ++     + +R      L +     CIV    +    + S +  S+  ++L +G+ V+  
Sbjct: 100 AAN----EILRTEVLSRLQKGEQGLCIVTYPDALAEKVVSRQELSENTLKLHVGEKVDTG 155

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
            +   L    ++  D     G + V G  I++F S   +  +R+  FG+D+E I  F   
Sbjct: 156 FITDVLHSYGFEYVDYVYEPGQYAVRGSIIDVF-SFSSEYPYRIDFFGDDVESIRTFEVE 214

Query: 367 TGQKIRNVETIKIYAN 382
           +       E+I I  +
Sbjct: 215 SQLSKEKKESIVIVPD 230



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +   +V  + D IN    +
Sbjct: 709 TLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFSEEV--IADAINFEMSR 766

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++ L         +L   +  R  + R+   H +++ +E  +II       +DVL+  
Sbjct: 767 NGQVFLVNNRIANLPELKAMILRRIPDCRIAIGHGQMEPVELEQIIFGFVNYDYDVLIAT 826

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 827 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLSSLTP 882

Query: 700 AIDETTRRRE 709
              E  RR +
Sbjct: 883 ---EAKRRLQ 889


>gi|195155931|ref|XP_002018854.1| GL26027 [Drosophila persimilis]
 gi|194115007|gb|EDW37050.1| GL26027 [Drosophila persimilis]
          Length = 578

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 99/297 (33%), Gaps = 43/297 (14%)

Query: 415 RLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD 474
           ++    R     +Y    +   G+    +N S  +        P  L +++ E + +  D
Sbjct: 250 QIYHEARKFSHESYLKISILYGGTSVKYQNESIMMGCHLLIATPGRLLDFV-ERAFITFD 308

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           ++   +                + + GF        R +        +  T++ SAT   
Sbjct: 309 DTRFLV----------MDEADRMLDMGF----SESMRKIVTHCTMRAQHQTLMFSAT-FP 353

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR---------- 584
            E+++  G  +   I         V I        DV   I+   +   R          
Sbjct: 354 QEIQRMAGEFLNNYIF--------VTIGVVGGACSDVKQTIHEVTKYNKRRKLIDILKES 405

Query: 585 ---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
               ++ V TKR A+ L  YL E       +H +    +R + +RD + GK  VL+  ++
Sbjct: 406 ADGTIVFVETKRGADFLASYLSEAEHPTTSIHGDRLQSQREQALRDFKTGKMKVLIATSV 465

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D  K     +    +  IGR  R  N+     + D    S 
Sbjct: 466 ASRGLDIKNVKHVVNYDMPK-----TIDDYVHRIGRTGRVGNNGRATSFFDPDQDSA 517


>gi|143636073|gb|ABO93350.1| vasa-like protein [Hydractinia echinata]
          Length = 680

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 84/216 (38%), Gaps = 33/216 (15%)

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII---------R 550
           +GF +P+  D   L F             SAT    E+++  G  +   +          
Sbjct: 401 HGFGMPAKEDRHTLMF-------------SAT-FPEEIQKLAGEFLNNYVFLTIGKVGST 446

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
            + +    +E+    ++ + + + +    + G + L+ V TKR A+ L  YL +      
Sbjct: 447 HSDIEQTVIEV-DNASKRDKLVEMLGQ--EGGNKNLVFVQTKRQADFLASYLCQNGFPTT 503

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H +    +R E +R+ R G+  VL+   +   GLDI +   V   D   E        
Sbjct: 504 SIHGDRFQQQREEALREFRAGQQTVLIATAVAARGLDIADVKQVINYDLPDE-----IEE 558

Query: 671 LIQTIGRAARNVNSK--VILYADTITKSIQLAIDET 704
            I  IGR  R  N       ++    +++  A+ +T
Sbjct: 559 YIHRIGRTGRIGNKGRATSFFSRGNDEALARALVKT 594


>gi|294951949|ref|XP_002787179.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239901883|gb|EER18975.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 479

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 3/149 (2%)

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           V   VE+ S   + +  +D +     +G RI++   TK+ A+ LT  +   N     +H 
Sbjct: 289 VKQRVEVVSEMDKRQMFFDWLKETYPKGSRIIVFTETKKGADALTREMRYNNFNAASIHG 348

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           + +  ER  I+ D + G+ +VLV  ++ + GLDI     V   D  K   +      I  
Sbjct: 349 DKEQRERDRILNDFKTGRCNVLVATDVAQRGLDIKNVEWVVNYDMPKT--VEDYVHRIGR 406

Query: 675 IGRAARNVNSKVILYADTIT-KSIQLAID 702
            GRA    NS   +  DT T   +++A D
Sbjct: 407 TGRAGAVGNSLTFITNDTHTPDRVRMAKD 435


>gi|218960874|ref|YP_001740649.1| putative transcription-repair coupling factor [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729531|emb|CAO80443.1| putative transcription-repair coupling factor [Candidatus
           Cloacamonas acidaminovorans]
          Length = 1127

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 99/335 (29%), Gaps = 63/335 (18%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           +++   +  +  S +      + +   +  I+++ + I+A  ++ +              
Sbjct: 25  KDRSIQIYHLNQSARALLAVHLWKHTGKNIILVSQDDIIAEDIWDDLCVLIGKENAH--- 81

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG--I 284
                     Y+P  +    +E S +  I   R     + L  +   + S  +   G  +
Sbjct: 82  ----------YLPDYEILPYEERSPHYSIRATRMETFLATLNNDKSAIYSLSARALGRYL 131

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLE 344
            + +  S+ I+ LK G   E   LL +L    Y+ Q            G  I+IF   L 
Sbjct: 132 PAQKFLSRHILHLKQGMECEPDTLLHNLYDMGYEIQYQVSKVFQAAKRGGIIDIFSPPLT 191

Query: 345 DVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
           +   R+  +G++I  +  F   T + +   +  + I              + +       
Sbjct: 192 N-PVRLEFWGDEIIGMRVFSVTTQRSLEQYLTELTILPARELSLSDVDSGSPIIA----- 245

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
                                        +   G  + IENY   L          T  +
Sbjct: 246 ----------------------------KIRNQGFFEGIENYYALLCNELQ-----TFAD 272

Query: 464 YIPED--------SLLFVDESHVTIPQISGMYRGD 490
           Y  +D             +E      Q    ++ +
Sbjct: 273 YFEKDNRILVWNNFYYLQEEYETLFEQALTTWQKE 307



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 67/167 (40%), Gaps = 7/167 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L      + E  +++ +     PV        +E + D I     +G 
Sbjct: 733 TLYMSATPIPRTLNMALSKLKEISLMQTSPKERLPVRTIITPRDMEVIKDAIRREIDRGG 792

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  E +   L     +VR++  H+++   +   ++ D    ++ VL+   +
Sbjct: 793 QVFFIHNRVQTIETVATELRNAMPKVRFIVGHAQMPEQQLERVMADFWAKEYQVLISTTI 852

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +  G+DIP    + I +A+  G  +    L Q  GR  R+       
Sbjct: 853 IENGIDIPNANTILIDNAETFGLAQ----LYQMRGRVGRSNRRAYAY 895


>gi|325281936|ref|YP_004254478.1| transcription-repair coupling factor [Odoribacter splanchnicus DSM
           20712]
 gi|324313745|gb|ADY34298.1| transcription-repair coupling factor [Odoribacter splanchnicus DSM
           20712]
          Length = 1104

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 94/231 (40%), Gaps = 20/231 (8%)

Query: 156 AIAQLLKGIHSR-EKVQLLLGVTGSGKTFTMAKVIEAMQRPAI--VMAPNKILAAQLYSE 212
           A+ +L + + +R ++   L+   GS  +  +  +   + RP +  V+  ++  AA  Y++
Sbjct: 15  AVKKLTELLTTRSDRKYRLVNNAGSVTSLIVGAM--RITRPGLRVVVLNDREEAAYFYND 72

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDC 272
                    + +  S Y               I++E   N+ +   R     ++      
Sbjct: 73  ILALADEKQIAFLPSSYRR------------MIKEEEKDNDSVLV-RTEVLNNIRNGEVD 119

Query: 273 IVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRV 331
            +++    +   +   E  S+M + +  GD++    + + LV+  ++R D     G F +
Sbjct: 120 TLITYPEALAEKVVDREVLSRMSMVVNQGDALSISFVENLLVEYGFERNDFVYEPGQFSI 179

Query: 332 CGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
            G  ++++ S  E+   R+  FG+++E I  F   T    +    + I  +
Sbjct: 180 RGSIVDVY-SFAEEQPVRIDFFGDEVESIRFFDIETQLSDKKTGKVSIVPD 229



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 71/194 (36%), Gaps = 15/194 (7%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+    G     IIR       P+  E+     Q+  + + I     +
Sbjct: 693 TLTMTATPIPRTLQFSLMGARDMSIIRTPPPNRYPIVTELHRFDEQL--IKEVILYEMAR 750

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++           D+   L      ++    H +++  E  +++ D   G +DVL+  
Sbjct: 751 NGQVFFIHNRVETIRDIQGMLQRIVPQVKTCVAHGQMEGEELEKVMHDFVRGDYDVLIAT 810

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + I  A   G     + L Q  GR  R+              ++  
Sbjct: 811 TIIESGLDIPNANTMIINQAQNYGL----SDLHQLRGRVGRSNKKAFCYLLTPPLDTVNS 866

Query: 700 AIDETTRRREKQLE 713
                 RRR K +E
Sbjct: 867 ----DARRRLKAIE 876


>gi|195403478|ref|XP_002060316.1| GJ16043 [Drosophila virilis]
 gi|194140655|gb|EDW57129.1| GJ16043 [Drosophila virilis]
          Length = 605

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 106/280 (37%), Gaps = 44/280 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++   +          + + + +   +  R     + GF         P   +
Sbjct: 251 TPGRLLDFLQAGTT--------NLRRCTYLVLDEADRM---MDMGFE--------PQIRK 291

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP--------VEI---RS 563
            +  +RP   T++ SAT      +  +  +   I    G ++          VE+     
Sbjct: 292 IFGQIRPDRQTLMWSATWPKEVRQLAEDFLGNYIHINIGSMELSANHNIRQYVEVCAEHE 351

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              +++D+   I   A    +I++ V TK+  + L  ++    + V  +H +   ++R  
Sbjct: 352 KGAKLKDLLSHIYDQAAMPGKIIIFVATKKKVDKLARFINALGVSVGSIHGDKSQMDRDN 411

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++ D R G+ ++LV  ++   GLDI     V   D     F +S    I  IGR  RN +
Sbjct: 412 VLNDFRSGRANILVATDVAARGLDIDGIKYVINFD-----FPQSSEDYIHRIGRTGRNRS 466

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           +    YA    K+ + A      R   ++       +NP+
Sbjct: 467 TGT-SYAFFTRKNAKCA------RALIEVLREANQIVNPE 499


>gi|294638493|ref|ZP_06716693.1| transcription-repair coupling factor [Edwardsiella tarda ATCC
           23685]
 gi|291088425|gb|EFE20986.1| transcription-repair coupling factor [Edwardsiella tarda ATCC
           23685]
          Length = 192

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 78/209 (37%), Gaps = 19/209 (9%)

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ-MIVQLKIG 300
           +T      S ++ I   R S+   L      I++  ++ +       S+     + ++ G
Sbjct: 1   ETLPYDNFSPHQDIISARLSSLYHLPGMERGIIILPINTLMQRVCPHSFLHGHALVMQKG 60

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
             + +  L + L +  Y+  D  +  G F   G  +++FP   ++  +R+  F ++I+ +
Sbjct: 61  QRLSRDTLRAQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSDE-PYRIDFFDDEIDSL 119

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
             F   + + +  VE I +     +    PT   A++  + + +             E +
Sbjct: 120 RLFDVDSQRTLNEVERIDLLPAHEF----PTDKNAIELFRSQWRE----------HFEVR 165

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYL 449
           R  + I    + +        IE +    
Sbjct: 166 RDAEHI---YQQVSKGVWPAGIEYWQPLF 191


>gi|239611619|gb|EEQ88606.1| ATP-dependent RNA helicase ded1 [Ajellomyces dermatitidis ER-3]
 gi|327348365|gb|EGE77222.1| ATP-dependent RNA helicase DED1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 692

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 13/189 (6%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV---DPPVEIRSARTQVEDVYD-- 573
           +     T++ SAT      +  +  + + I    G V      +  R    + +   D  
Sbjct: 388 DKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRVVECESDKDKDSA 447

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             +I      GL  L+ V TKR A+ L+++L +  +    +H +    ER   +   R G
Sbjct: 448 LLDILCTDSTGL-TLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTG 506

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV   +   GLDIP    V   D   E         +  IGR  R  N+ +     
Sbjct: 507 RCPILVATAVAARGLDIPNVTHVINYDLPNE-----IDDYVHRIGRTGRAGNTGISTAFF 561

Query: 692 TITKSIQLA 700
           + +K+ ++A
Sbjct: 562 SRSKNFKIA 570


>gi|261204854|ref|XP_002627164.1| ATP-dependent RNA helicase ded1 [Ajellomyces dermatitidis SLH14081]
 gi|239592223|gb|EEQ74804.1| ATP-dependent RNA helicase ded1 [Ajellomyces dermatitidis SLH14081]
          Length = 692

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 13/189 (6%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV---DPPVEIRSARTQVEDVYD-- 573
           +     T++ SAT      +  +  + + I    G V      +  R    + +   D  
Sbjct: 388 DKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRVVECESDKDKDSA 447

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             +I      GL  L+ V TKR A+ L+++L +  +    +H +    ER   +   R G
Sbjct: 448 LLDILCTDSTGL-TLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTG 506

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV   +   GLDIP    V   D   E         +  IGR  R  N+ +     
Sbjct: 507 RCPILVATAVAARGLDIPNVTHVINYDLPNE-----IDDYVHRIGRTGRAGNTGISTAFF 561

Query: 692 TITKSIQLA 700
           + +K+ ++A
Sbjct: 562 SRSKNFKIA 570


>gi|198462622|ref|XP_002135340.1| GA28491 [Drosophila pseudoobscura pseudoobscura]
 gi|198150906|gb|EDY73967.1| GA28491 [Drosophila pseudoobscura pseudoobscura]
          Length = 537

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 76/187 (40%), Gaps = 19/187 (10%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q +   G  +          +++D+   I   A    +I++ V TK+  +
Sbjct: 314 LELSANHNIRQYVEVCGEHEK-------SAKLKDLLSHIYDQAHAPGKIIIFVATKKKTD 366

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L  ++    + V  +H +   ++R  ++ D R G+ ++LV  ++   GLD+     V  
Sbjct: 367 ELARFINAFGVSVGSIHGDKSQMDRDSVLNDFRSGRANILVATDVAARGLDVDGIKYVIN 426

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
            D     + +S    I  IGR  R ++     YA    K+ + A      R    +    
Sbjct: 427 FD-----YPQSSEDYIHRIGRTGRKLSKGT-SYAFFTRKNARCA------RALIDILREA 474

Query: 717 KHNINPQ 723
             N+NP+
Sbjct: 475 NQNVNPE 481


>gi|167753145|ref|ZP_02425272.1| hypothetical protein ALIPUT_01416 [Alistipes putredinis DSM 17216]
 gi|167659459|gb|EDS03589.1| hypothetical protein ALIPUT_01416 [Alistipes putredinis DSM 17216]
          Length = 1110

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 91/247 (36%), Gaps = 30/247 (12%)

Query: 151 GDQPAAIAQLLKGIH----------SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           G++P  I QL+ G            S  +  LL  + G   +   A +I       + +A
Sbjct: 4   GNKPN-ILQLIAGAEPLGAMRRAYDSAGRTVLLRDMVGGALSVYAAALIARTGGTHVFVA 62

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            ++  AA L ++F        V +F   Y          R+  Y  +++    Q    R 
Sbjct: 63  EDRDAAAYLLNDFYALLDEKQVYFFPGSYK---------RSIVYGTEDA----QGVVQRT 109

Query: 261 SATRSL-----LERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
           +A  +L           I     +    +   +S  +  V++K+GD +   EL   L   
Sbjct: 110 AALSALRREMAAGEYRIICTYPEALAERVTDPDSMRRETVRVKVGDRLAIGELEELLADS 169

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            + + D     G + + G   ++F S  E   +R+  FG +++ I  F   +      + 
Sbjct: 170 GFTKVDFVYEPGQYSLRGGIFDVF-SFSESKPYRLDFFGEEVDSIRRFEISSQLSADRLN 228

Query: 376 TIKIYAN 382
            ++I  N
Sbjct: 229 EVEIVPN 235



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 73/197 (37%), Gaps = 21/197 (10%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+    G     +I        P+   S     E + D +N    +G 
Sbjct: 704 TLTLTATPIPRTLQFSLMGSRDLSVISTPPPNRQPIITESHLFSEEIIRDAVNAELDRGG 763

Query: 584 RILLTVLTKRMAEDL-------TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           ++          EDL       T       + +   H ++   +  ++I D   G+FDVL
Sbjct: 764 QV---YFVHNRVEDLMTLQGMVTRLCPRARVGIG--HGKMPAEQLEKLIMDFIYGEFDVL 818

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +   ++  G+DIP    + + +A   G     + L Q  GR  R        Y  +    
Sbjct: 819 ISTTIVENGIDIPNANTIIVNNAQNFGL----SDLHQLRGRVGRGSQRGY-CYLLSPGDE 873

Query: 697 IQLAIDETTRRREKQLE 713
           +   +    RRR + +E
Sbjct: 874 L---LTPDARRRLRAIE 887


>gi|10039335|dbj|BAB13310.1| Vasa-related protein PoVAS1 [Ephydatia fluviatilis]
          Length = 546

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 91/256 (35%), Gaps = 33/256 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++            V + QIS +   +  R     + GF  P         + 
Sbjct: 227 TPGRLLDFLNRG--------QVQLDQISVLILDEADRM---LDMGFE-PEIRK-IVSNYS 273

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQ 567
                +  T++ SAT    E+++     +   +  T          +    +E+     +
Sbjct: 274 MPETGKRQTLMFSAT-FPEEIQRIANEFLSNYLFLTVGRVGGATSDITQRIIEV-DEFGK 331

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            E + + ++       R L+ V TKR A+ L  YL + +     +H +    ER E +RD
Sbjct: 332 REKLSEILSATGVD--RTLVFVETKRNADFLATYLSQESFPTTSIHGDRFQREREEALRD 389

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-- 685
            R G   VLV  ++   GLDIP+   V   D        +    +  IGR  R  N    
Sbjct: 390 FRSGLAPVLVATSVAARGLDIPDVKHVVNYD-----LPNNIEEYVHRIGRTGRIGNQGLA 444

Query: 686 VILYADTITKSIQLAI 701
              +       +  A+
Sbjct: 445 TAFFHKEKDAPLARAL 460


>gi|240281206|gb|EER44709.1| ATP-dependent RNA helicase DED1 [Ajellomyces capsulatus H143]
 gi|325092298|gb|EGC45608.1| ATP-dependent RNA helicase DED1 [Ajellomyces capsulatus H88]
          Length = 694

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 13/189 (6%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV---DPPVEIRSARTQVEDVYD-- 573
           +     T++ SAT      +  +  + + I    G V      +  R    + +   D  
Sbjct: 392 DKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRIVECESDKDKDSA 451

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             +I  +   GL  L+ V TKR A+ L+++L +  +    +H +    ER   +   R G
Sbjct: 452 LLDILCSDSTGL-TLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTG 510

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV   +   GLDIP    V   D   E         +  IGR  R  N+ +     
Sbjct: 511 RCPILVATAVAARGLDIPNVTHVINYDLPNE-----IDDYVHRIGRTGRAGNTGISTAFF 565

Query: 692 TITKSIQLA 700
           + +K+ ++A
Sbjct: 566 SRSKNFKIA 574


>gi|225562366|gb|EEH10645.1| ATP-dependent RNA helicase DED1 [Ajellomyces capsulatus G186AR]
          Length = 694

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 13/189 (6%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV---DPPVEIRSARTQVEDVYD-- 573
           +     T++ SAT      +  +  + + I    G V      +  R    + +   D  
Sbjct: 392 DKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRIVECESDKDKDSA 451

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             +I  +   GL  L+ V TKR A+ L+++L +  +    +H +    ER   +   R G
Sbjct: 452 LLDILCSDSTGL-TLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTG 510

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV   +   GLDIP    V   D   E         +  IGR  R  N+ +     
Sbjct: 511 RCPILVATAVAARGLDIPNVTHVINYDLPNE-----IDDYVHRIGRTGRAGNTGISTAFF 565

Query: 692 TITKSIQLA 700
           + +K+ ++A
Sbjct: 566 SRSKNFKIA 574


>gi|154279136|ref|XP_001540381.1| ATP-dependent RNA helicase ded1 [Ajellomyces capsulatus NAm1]
 gi|160380637|sp|A6R3L3|DED1_AJECN RecName: Full=ATP-dependent RNA helicase DED1
 gi|150412324|gb|EDN07711.1| ATP-dependent RNA helicase ded1 [Ajellomyces capsulatus NAm1]
          Length = 694

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 13/189 (6%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV---DPPVEIRSARTQVEDVYD-- 573
           +     T++ SAT      +  +  + + I    G V      +  R    + +   D  
Sbjct: 392 DKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRIVECESDKDKDSA 451

Query: 574 --EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             +I  +   GL  L+ V TKR A+ L+++L +  +    +H +    ER   +   R G
Sbjct: 452 LLDILCSDSTGL-TLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTG 510

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV   +   GLDIP    V   D   E         +  IGR  R  N+ +     
Sbjct: 511 RCPILVATAVAARGLDIPNVTHVINYDLPNE-----IDDYVHRIGRTGRAGNTGISTAFF 565

Query: 692 TITKSIQLA 700
           + +K+ ++A
Sbjct: 566 SRSKNFKIA 574


>gi|87311618|ref|ZP_01093735.1| transcription-repair coupling factor [Blastopirellula marina DSM
           3645]
 gi|87285621|gb|EAQ77538.1| transcription-repair coupling factor [Blastopirellula marina DSM
           3645]
          Length = 1077

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 108/279 (38%), Gaps = 33/279 (11%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             +L+  I +  K   + GV GS      A +   +  P +V+ P+      +    + F
Sbjct: 27  FRELVTQIAAGRKG-TIEGVWGSACALITAAIEPDIAGPLLVVCPSLADIDDVSDALRTF 85

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                V++     D                 E  ++++I   R    + L       ++ 
Sbjct: 86  SSAEIVQFPAWESDR---------------SERLLHDEIYGRRLRVLKQLTHGPQPAIIV 130

Query: 277 SV--SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           +   S +  + S  + +    ++ +GD ++ +EL   LV+ ++       + G F + G 
Sbjct: 131 TSIESLLQPVPSAANVAANSRRVAVGDQLDVEELAQWLVRHKFHSTSAVELPGEFSLRGG 190

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI----YANSHYVTPRP 390
            +++F    E  A R+ +FG++IE I +F   T + +  +ET++I    Y          
Sbjct: 191 ILDVFAPDWEQPA-RIELFGDEIESIRQFEIGTQRSLHPLETVEITVLRYGKGQTGHFSD 249

Query: 391 TLNTAMKYIKEELK----------MRLIELEKEGRLLEA 419
            L TA   +  EL+           RL ++E +  L E 
Sbjct: 250 YLPTASACVLIELERMKDSAEQYLDRLEKIEDKFGLHET 288



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 7/168 (4%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-VEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L      + +     T  +D   VE + +R   E +   +     +G 
Sbjct: 694 VLTMTATPIPRTLHMSLVGVRDISNLETPPLDRVAVETKVSRWGDELIRHAVLRELSRGG 753

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I       +  E +   L       +    H ++      +++ D   GKFD+L+   +
Sbjct: 754 QIFFVHNRVQDIELIAAKLQRIVPEAKIGIGHGQMGEGALEKVMTDFIAGKFDLLLATTI 813

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           +  GLDIP    + I +A++ G       L Q  GR  R  +      
Sbjct: 814 VESGLDIPNANTIFIDEANRYGLSE----LHQLRGRVGRYKHRAYCYM 857


>gi|195170555|ref|XP_002026077.1| GL16096 [Drosophila persimilis]
 gi|194110957|gb|EDW33000.1| GL16096 [Drosophila persimilis]
          Length = 554

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 15/177 (8%)

Query: 550 RPTGLVDPPVEI---RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           RP   +   VE+        +++D+   I   A    +I++ V TK+  ++L  ++    
Sbjct: 334 RPNHNIRQYVEVCGEHEKSAKLKDLLSHIYDQAHAPGKIIIFVATKKKTDELARFINAFG 393

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           + V  +H +   ++R  ++ D R G+ ++LV  ++   GLD+     V   D     + +
Sbjct: 394 VSVGSIHGDKSQMDRDSVLNDFRSGRANILVATDVAARGLDVDGIKYVINFD-----YPQ 448

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           S    I  IGR  R ++     YA    K+ + A      R    +      N+NP+
Sbjct: 449 SSEDYIHRIGRTGRKLSKGT-SYAFFTRKNARCA------RALIDILREANQNVNPE 498


>gi|221056789|ref|XP_002259532.1| RNA helicase-1 [Plasmodium knowlesi strain H]
 gi|193809604|emb|CAQ40305.1| RNA helicase-1, putative [Plasmodium knowlesi strain H]
          Length = 669

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 97/235 (41%), Gaps = 22/235 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +++  +T+ Q   +   +  R   L + GF      +      + +   +  T++ SAT
Sbjct: 366 MLNKKRMTLEQCRYLCFDEADR---LIDLGFE-----EEVRNTLDHF-SRQRQTLLFSAT 416

Query: 532 PGSWELEQCQGIIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                 E  +  +V  II   G      +D   E+   + +++ +   + +  + G  +L
Sbjct: 417 MPKKIQEFAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEELK-LSYLLEVLQKTGPPVL 475

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +    K+  +D+ EYL  + +    +H  +   ER E I   R GK D+LVG ++  +GL
Sbjct: 476 IFCENKKDVDDVHEYLLLKGVNAIAIHGNLGQTERQEAINLFREGKKDILVGTDVASKGL 535

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           D P    V   D  K+       + +  IGR  R   + +      I K+ + AI
Sbjct: 536 DFPSIEHVINYDMPKD-----IENYVHRIGRTGRCGKTGIATTF--INKNQEEAI 583


>gi|94501739|ref|ZP_01308253.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65]
 gi|94426139|gb|EAT11133.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65]
          Length = 449

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 90/276 (32%), Gaps = 33/276 (11%)

Query: 465 IPEDSLLFVDESHVTIPQISGM--YRGDFH-----RKATLAEYGFRLPSCMDNRPLRFEE 517
             ++  + +      I  +        D           + + GF      D   +    
Sbjct: 118 FRKNPEIIIATPGRLIDHLKQKKDLMEDVEYFILDEADRMLDMGFE----EDVLTIANAC 173

Query: 518 WNCLRPTTIVVSATPGSWELEQC----QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
               +P T++ SAT     L+      Q    E ++         +E        +    
Sbjct: 174 SGKAKPQTLLFSATLQQRGLKHVIKQIQNDPEEIVVDSFRGEHSNIEQHYMLADDDKHKQ 233

Query: 574 EINLAAQQGL---RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
            I           + ++   TK   E    +L   N+ V Y+H ++   ER  ++  +R 
Sbjct: 234 RILTWLLSNEEYRQAIIFTNTKEKTEQTYHFLSYHNVEVGYLHGDMTQDERNHVMTQMRN 293

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+F VLV  ++   GLDI    LV   D  + G        +  IGR  R   S      
Sbjct: 294 GRFKVLVATDVAARGLDIQSIDLVINFDMARSG-----DDYVHRIGRTGRAEASG----- 343

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
                S    ID T    +  +E   + N+N + VK
Sbjct: 344 -----SAISLIDHTEWNLKAAIERYLRVNMNHKYVK 374


>gi|5679690|emb|CAB51742.1| RNA helicase-1 [Plasmodium falciparum]
          Length = 386

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 97/235 (41%), Gaps = 22/235 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +++  +T+ Q   +   +  R   L + GF      +      + ++  R  T++ SAT
Sbjct: 142 MLNKKRMTLEQCRYLCFDEADR---LIDLGFE-----EEVRNTLDHFSNQR-QTLLFSAT 192

Query: 532 PGSWELEQCQGIIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                 E  +  +V  II   G      +D   E+   + + + +   + +  + G  +L
Sbjct: 193 MPKKIQEFAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEEFK-LSYLLEVLQKTGPPVL 251

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +    K+  +D+ EYL  + +    +H  +   ER E I   R GK D+LVG ++  +GL
Sbjct: 252 IFCENKKDVDDVHEYLLLKGVNAVAIHGNLGQSERQEAINLFREGKKDILVGTDVASKGL 311

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           D P    V   D  K+       + +  IGR  R   + +      I K+ + AI
Sbjct: 312 DFPSIEHVINYDMPKD-----IENYVHRIGRTGRCGKTGIATTF--INKNQEEAI 359


>gi|251772784|gb|EES53346.1| transcription-repair coupling factor [Leptospirillum
           ferrodiazotrophum]
          Length = 1145

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 17/249 (6%)

Query: 148 HPSGDQ--PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAI--VMAPNK 203
            PS  Q    A  + +     R   Q + G+   G +  +  ++    RP I  V+    
Sbjct: 2   SPSPLQRTLDAFKKKITPPEKRLISQTIPGIAREGFSL-LPGLLRRAGRPEILWVLTSTP 60

Query: 204 ILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSAT 263
             A +L  E ++              D        P  +    +  S  + I   R  A 
Sbjct: 61  EKALRLVEEIRSA---------PLLLDMEPDVLLFPEEEVLPYERESPADFIRAERIHAL 111

Query: 264 RSLLER--NDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
             L      D +V   V+ +    S      +   L+ G   + + ++ +L+ Q Y R  
Sbjct: 112 DRLASDTPPDVVVSPVVAVLRKTLSPPLLKSVRRTLRTGMEEDPQSVVETLLAQGYVRVP 171

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
                G F V G  ++++ S       R+     +I  I  F P T + +  V  + +  
Sbjct: 172 QVTAPGEFSVRGALVDLY-STDRRRPVRLEWDDLEIRSIRSFDPNTQRSVEAVGEVDLLP 230

Query: 382 NSHYVTPRP 390
           +  ++TP P
Sbjct: 231 SHEWITPSP 239



 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 10/111 (9%)

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L     E    V Y H ++   E   ++      +  +LV   ++  GLDIP    + I 
Sbjct: 828 LAALFPEAG--VAYAHGQMGEEEIEAVMGKFLRRESRILVSTTIVESGLDIPYANTILIN 885

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
            AD  G       L Q  GR  R        +        + A+ E  R+R
Sbjct: 886 RADMFGIAE----LYQLRGRVGRGGQQAYAYFI----TPSEEALGEVARKR 928


>gi|293331893|ref|NP_001169380.1| hypothetical protein LOC100383248 [Zea mays]
 gi|224029005|gb|ACN33578.1| unknown [Zea mays]
          Length = 498

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 68/178 (38%), Gaps = 14/178 (7%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------Y 572
            R  T++ +AT           ++V  +    G VD  V   S    VE +         
Sbjct: 326 HRRQTLMYTATWPKEVRRIADDLLVHPVQVTIGSVDSLVANSSITQHVEIITPSEKQRRL 385

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I  +   G +IL+   TKRM + L   L  R      +H +    ER +++   R G+
Sbjct: 386 EQILRSQDSGSKILIFCTTKRMCDQLARTLT-RQFGASAIHGDKSQSEREKVLNQFRSGR 444

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
             +LV  ++   GLDI +  +V   D     F       +  IGR  R   + V    
Sbjct: 445 SPILVATDVAARGLDIKDIRVVINYD-----FPTGVEDYVHRIGRTGRAGATGVAYIF 497


>gi|291244816|ref|XP_002742290.1| PREDICTED: Vasa-like, partial [Saccoglossus kowalevskii]
          Length = 679

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 93/259 (35%), Gaps = 42/259 (16%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF----RLPSCMDNRP 512
            P  L +++ +          V + ++  +   +  R     + GF    R      N P
Sbjct: 434 TPGRLLDFVGKG--------KVGLGKLKYLILDEADRM---LDMGFEPEIRRLVASPNMP 482

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG------LVDPPVEIRSART 566
            + +        T++ SAT    E+++  G  +   I  T         D    +    +
Sbjct: 483 SKEDR------QTLMFSAT-FPEEIQKLAGDFLNDYIFLTVGRVGGTTPDIEQSVVQMES 535

Query: 567 Q-------VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           Q       +E + D I+       ++++ V TKR A+ +  YL +       +H +    
Sbjct: 536 QFQKKEKLMEILIDVISSFPGT-EKVVVFVETKRSADFVASYLSQSGFPTTSIHGDRLQR 594

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER E +   + G+  VLV  ++   GLDIP    V   D        +    +  IGR  
Sbjct: 595 EREEALSCFKRGETPVLVATSVAARGLDIPGVKHVVNFD-----LPDNIDEYVHRIGRTG 649

Query: 680 RNVN-SKVILYADTITKSI 697
           R  N  K + + D    + 
Sbjct: 650 RVGNIGKAVSFFDNDRDTA 668


>gi|326578004|gb|EGE27868.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis O35E]
          Length = 581

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 79/212 (37%), Gaps = 28/212 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G I E        V   VE       +++     +    +  
Sbjct: 197 QTVMSSAT-----WDGAVGKIAESFTVNPEKVSIKVE----SAHIDESVYYCDDFNHKNN 247

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK   E L   L E   + RY+H ++   +R  I+ D++ G
Sbjct: 248 ILLQVLNNPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSG 307

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           K DVLV  ++   G+DI     V   D       R     +  IGR  R   + V +   
Sbjct: 308 KCDVLVATDVAARGIDISAISHVINYD-----LPRQVEDYVHRIGRCGRAGRTGVAVNLC 362

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           +I  + Q  ++   R  ++Q+  +    + P+
Sbjct: 363 SINDNRQ--LEHINRYLKRQMSVSTIEGLEPR 392


>gi|226246544|ref|NP_001139665.1| vasa protein [Strongylocentrotus purpuratus]
 gi|223056284|gb|ACM80369.1| vasa [Strongylocentrotus purpuratus]
          Length = 766

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 70/183 (38%), Gaps = 11/183 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV---DPPVEIR-SARTQVE--DVYDEINL 577
            T++ SAT  +   E+    + + +    G V      +E R  +  Q +  D   EI  
Sbjct: 501 QTLMFSATFPNEVQEKAGEYLNDYLFLTVGRVGGAASDIEQRVFSVGQFDKRDKLMEILR 560

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +   R L+ V TKR A+ L   L +       +H + +  ER E +RD + GK  +LV
Sbjct: 561 DQKDDDRTLVFVSTKRNADFLASLLSQSEFPTTSIHGDRQQQEREEALRDFKTGKAPILV 620

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDIP    V   D             +  IGR  R  N           K  
Sbjct: 621 ATSVAARGLDIPGVKHVVNYD-----LPSDIDEYVHRIGRTGRVGNLGRSTSFYDAEKDA 675

Query: 698 QLA 700
            +A
Sbjct: 676 NIA 678


>gi|300709530|ref|YP_003735344.1| Hef nuclease [Halalkalicoccus jeotgali B3]
 gi|299123213|gb|ADJ13552.1| Hef nuclease [Halalkalicoccus jeotgali B3]
          Length = 799

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 19/193 (9%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-------HSEVKTLERIEIIRD 627
           I      G R+++    +  AE LTE+L E     R++        S +   E+ E++ D
Sbjct: 364 IETLVDGGRRVIVFTEYRDTAETLTEFLGEHVDTRRFVGQGDKEGSSGMTQKEQKEVLDD 423

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            R G+F+VLV  ++  EGLD+PE  LV   +      + +    IQ  GR  R    +V+
Sbjct: 424 FRKGEFEVLVSTSVAEEGLDVPEVDLVLFYEP-----VPTAIRAIQRKGRTGRQDEGQVV 478

Query: 688 L-YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
           +  A+         I   +RRREK++E   +     + V  ++ E +DP   + A     
Sbjct: 479 VLLAEDTRDEAYFWI---SRRREKEMESELRK---LKGVASEVEEQLDPSQRQLADFDAE 532

Query: 747 SIDAQQLSLSKKK 759
              ++   + + +
Sbjct: 533 DGGSEGDDVDELE 545


>gi|156095288|ref|XP_001613679.1| RNA helicase-1 [Plasmodium vivax SaI-1]
 gi|148802553|gb|EDL43952.1| RNA helicase-1, putative [Plasmodium vivax]
          Length = 667

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 97/235 (41%), Gaps = 22/235 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +++  +T+ Q   +   +  R   L + GF      +      + +   +  T++ SAT
Sbjct: 364 MLNKKRMTLEQCRYLCFDEADR---LIDLGFE-----EEVRNTLDHF-SRQRQTLLFSAT 414

Query: 532 PGSWELEQCQGIIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                 E  +  +V  II   G      +D   E+   + +++ +   + +  + G  +L
Sbjct: 415 MPKKIQEFAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEELK-LSYLLEVLQKTGPPVL 473

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +    K+  +D+ EYL  + +    +H  +   ER E I   R GK D+LVG ++  +GL
Sbjct: 474 IFCENKKDVDDVHEYLLLKGVNAIAIHGNLGQTERQEAINLFREGKKDILVGTDVASKGL 533

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           D P    V   D  K+       + +  IGR  R   + +      I K+ + AI
Sbjct: 534 DFPSIEHVINYDMPKD-----IENYVHRIGRTGRCGKTGIATTF--INKNQEEAI 581


>gi|326561884|gb|EGE12219.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 7169]
 gi|326563318|gb|EGE13585.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 46P47B1]
 gi|326565972|gb|EGE16133.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 103P14B1]
 gi|326568894|gb|EGE18963.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC1]
 gi|326571867|gb|EGE21872.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC8]
 gi|326575379|gb|EGE25304.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 101P30B1]
 gi|326576534|gb|EGE26442.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis CO72]
          Length = 581

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 79/212 (37%), Gaps = 28/212 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G I E        V   VE       +++     +    +  
Sbjct: 197 QTVMSSAT-----WDGAVGKIAESFTVNPEKVSIKVE----SAHIDESVYYCDDFNHKNN 247

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK   E L   L E   + RY+H ++   +R  I+ D++ G
Sbjct: 248 ILLQVLNNPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSG 307

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           K DVLV  ++   G+DI     V   D       R     +  IGR  R   + V +   
Sbjct: 308 KCDVLVATDVAARGIDISAISHVINYD-----LPRQVEDYVHRIGRCGRAGRTGVAVNLC 362

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           +I  + Q  ++   R  ++Q+  +    + P+
Sbjct: 363 SIDDNRQ--LEHINRYLKRQMSVSTIEGLEPR 392


>gi|326569194|gb|EGE19255.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC7]
          Length = 581

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 79/212 (37%), Gaps = 28/212 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G I E        V   VE       +++     +    +  
Sbjct: 197 QTVMSSAT-----WDGAVGKIAESFTVNPEKVSIKVE----SAHIDESVYYCDDFNHKNN 247

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK   E L   L E   + RY+H ++   +R  I+ D++ G
Sbjct: 248 ILLQVLNNPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSG 307

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           K DVLV  ++   G+DI     V   D       R     +  IGR  R   + V +   
Sbjct: 308 KCDVLVATDVAARGIDISAISHVINYD-----LPRQVEDYVHRIGRCGRAGRTGVAVNLC 362

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           +I  + Q  ++   R  ++Q+  +    + P+
Sbjct: 363 SIDDNRQ--LEHINRYLKRQMSVSTIEGLEPR 392


>gi|70926570|ref|XP_735804.1| helicase [Plasmodium chabaudi chabaudi]
 gi|56509789|emb|CAH86331.1| helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 260

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 95/229 (41%), Gaps = 22/229 (9%)

Query: 478 VTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537
           +T+ Q   +   +  R   L + GF      +      + ++  R  T++ SAT      
Sbjct: 1   MTLEQCRYLCFDEADR---LIDLGFE-----EEIRNTLDNFSNQR-QTLLFSATMPKKIQ 51

Query: 538 EQCQGIIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
           E  +  +V  II   G      +D   E+   + + + +   + +  + G  +L+    K
Sbjct: 52  EFAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEEFK-LSYLLQVLQKTGPPVLIFCENK 110

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           +  +D+ EYL  + +    +H  +   ER+E I   R G+ DVLVG ++  +GLD P   
Sbjct: 111 KDVDDVHEYLLLKGVNAIAIHGSLGQTERLEAINLFRNGEKDVLVGTDVASKGLDFPSIE 170

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
            V   D  K+       + +  IGR  R   + +      I K+ + AI
Sbjct: 171 HVINYDMPKD-----IENYVHRIGRTGRCGKTGIATTF--INKNQEEAI 212


>gi|297171094|gb|ADI22106.1| transcription-repair coupling factor (superfamily II helicase)
           [uncultured Planctomycetales bacterium HF0200_11L05]
          Length = 530

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 81/217 (37%), Gaps = 20/217 (9%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           I++  N +LA   Y E K    H  V  F             P T+T      S ++ I 
Sbjct: 26  IIITSNSLLAESTYQELKK--KHLKVNLF-------------PHTETLPYDFFSPSKDIK 70

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            +R      LL      ++ S+  +      + +      LK+  S+ +K+L+S L    
Sbjct: 71  NLRMQVLSGLLAGEIHTLIVSIHALMSPCPDKPHLLPFELLKVNTSINRKKLISGLQNSG 130

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y+R+DI    G F + G  I+I+ +   D   R+ +  + IE +  F P +    + + +
Sbjct: 131 YERKDIVNEIGEFALRGSIIDIY-ATGYDEPIRIEINESKIESLRTFDPSSQITRQKINS 189

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
                   Y          +   K+  +      E++
Sbjct: 190 FSAAPPYEYAL----NQKGINLFKKNWRNYFDAFEED 222


>gi|302840989|ref|XP_002952040.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f.
           nagariensis]
 gi|300262626|gb|EFJ46831.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f.
           nagariensis]
          Length = 622

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 90/248 (36%), Gaps = 29/248 (11%)

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536
            V + Q+S +   +  R     + GF        R L        +  T+  SAT    E
Sbjct: 263 QVRLQQVSYLVLDEADRM---LDMGFEPQIQRIVRTLP------RQRQTLFFSAT-WPRE 312

Query: 537 LEQ-CQGIIVEQIIRPT--GLVDPPVEIRSARTQVEDV---------YDEINLAAQQGLR 584
           ++      +V Q +     G+ +  V  +S    V  +            I  +   G R
Sbjct: 313 VKHIAAQFVVNQTVHVFIGGVEEKLVANKSITQHVLVLNSSHEKFGELSRIIRSKPAGTR 372

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++   TKRM + L+ Y   R  R   +H + K  ER  +++  + G+  +LV  ++   
Sbjct: 373 IIIFCTTKRMCDQLS-YQMSREFRAAAIHGDKKQSERDYVLQAFKDGRTPILVATDVAAR 431

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLDIP    V   D     F       I  IGR  R   +    +     +  + A D  
Sbjct: 432 GLDIPNVAAVVNFD-----FPTGTEDYIHRIGRTGRAGATGEA-FTFMTGEDAKHARDLI 485

Query: 705 TRRREKQL 712
              RE Q 
Sbjct: 486 QVMREAQQ 493


>gi|169335734|ref|ZP_02862927.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258472|gb|EDS72438.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM
           17244]
          Length = 510

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 114/266 (42%), Gaps = 27/266 (10%)

Query: 524 TTIVVSAT--PGSWELEQC--QGIIVEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINL 577
            T++ SAT  P    +     +  ++ QI +    V+   +  I   + + ++V + +  
Sbjct: 181 QTVLFSATMPPAIMNIIDTFLKNPLLIQIDKEQVTVNKIAQNYIDVPKGKKKEVLNLLLH 240

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                L  ++   TKRM +DLT++L +       +H +++  ER  ++ + +  K  +LV
Sbjct: 241 YYGSKL-TIIFCNTKRMVDDLTKFLRKNGFSAECLHGDIRQNERSRVMSNFKNAKTPILV 299

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-- 695
             ++   G+D+ +   V   D       ++    I  IGR AR   +   +      K  
Sbjct: 300 ATDVAARGIDVKDVEYVINYD-----IPQNSEYYIHRIGRTARGGKTGTSITMTNNRKQV 354

Query: 696 -SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
             +++ + ET  + +K L+   K++IN ++ K+ +  +I  +  E+ +   +  D + L 
Sbjct: 355 TDLKMILKETNSKIKK-LDIPTKNDINSKNSKDNMSVIISALKRENNSHDEMISDLKDLG 413

Query: 755 LSKKKGKAHLKSLRKQMHLAADNLNF 780
            S+ +              AA NL F
Sbjct: 414 YSENQIAK-----------AALNLYF 428


>gi|82915217|ref|XP_729012.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485792|gb|EAA20577.1| RNA helicase-1 [Plasmodium yoelii yoelii]
          Length = 654

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 98/235 (41%), Gaps = 22/235 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +++  +T+ Q   +   +  R   L + GF      +      + ++  R  T++ SAT
Sbjct: 351 MLNKKRMTLEQCRYLCFDEADR---LIDLGFE-----EEIRNTLDNFSSQR-QTLLFSAT 401

Query: 532 PGSWELEQCQGIIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                 E  +  +V  II   G      +D   E+   + + + +   + +  + G  +L
Sbjct: 402 MPRKIQEFAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEEFK-LSYLLQVLQKTGPPVL 460

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +    K+  +D+ EYL  + +    +H  +   ER+E I   R G+ DVLVG ++  +GL
Sbjct: 461 IFCENKKDVDDVHEYLLLKGVNAIAIHGSLGQTERLEAINLFRNGEKDVLVGTDVASKGL 520

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           D P    V   D  K+       + +  IGR  R   + +      I K+ + AI
Sbjct: 521 DFPSIEHVINYDMPKD-----IENYVHRIGRTGRCGKTGIATTF--INKNQEEAI 568


>gi|228470004|ref|ZP_04054920.1| transcription-repair coupling factor [Porphyromonas uenonis 60-3]
 gi|228308385|gb|EEK17223.1| transcription-repair coupling factor [Porphyromonas uenonis 60-3]
          Length = 1114

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 20/226 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I +L + +   ++   L GVT S   F +A +      P +V+A +   A  +  + +  
Sbjct: 13  IVELRQALQQ-DQCVELEGVTASAPAFILATLAREH--PYLVIAEDADSAGYMLGDLEAL 69

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                         YY P A+         K        + +R      L   +  ++VS
Sbjct: 70  ----------GVKAYYYPSAFNRHI-----KYGQREPAQEVLRAELLACLAVGDTPLIVS 114

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
               +   I S +  +Q    L +GD + + +L   L+++ ++  D     G     G  
Sbjct: 115 YPEALAEAIPSQQEVAQSCFTLSVGDVISRDKLRERLLEEGFEEVDYVYSPGQVVYRGSL 174

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           ++IF S+     +R+  F ++I+ I  F   +   +   E  +I  
Sbjct: 175 VDIF-SYGSTYPYRIDFFDDEIDSIRRFDIESQLSVDQCERAEIAP 219



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 66/192 (34%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G      I        PV  R  R   E + D I     +  
Sbjct: 700 TLTLSATPIPRTLQFSLMGARDLSNINTPPRNRQPVTTRLIRWSQETIADAIGYELARHG 759

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++            +   + E    IR+   H  +   E   I+ D    K+D+L+   +
Sbjct: 760 QVFFVHNRIESIHGVAGQIQECVPGIRIAIAHGRLTPSETERILLDFAERKYDLLLATTI 819

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I  A + G     + L Q  GR  R               ++  A 
Sbjct: 820 IENGIDMPSVNTIIINSAHRYGL----SDLHQLRGRVGRGSQRAYCYLITPPLGTLTEA- 874

Query: 702 DETTRRREKQLE 713
                RR K +E
Sbjct: 875 ---AARRVKAIE 883


>gi|332299515|ref|YP_004441436.1| transcription-repair coupling factor [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176578|gb|AEE12268.1| transcription-repair coupling factor [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 1115

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 84/226 (37%), Gaps = 20/226 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I +L + +   +    L GVT S   F +A +      P +V+A +   A  +  + +  
Sbjct: 13  IVELRQALQQ-DHCVELEGVTASAPAFILATLAREH--PYLVIAEDADSAGYMLGDLEAL 69

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                         YY P A+         K        + +R     SL   +  ++VS
Sbjct: 70  ----------GVKAYYYPSAFNRHI-----KYGQREPAQEVLRAELLASLAAGDTPLIVS 114

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
               +   I S +  +Q    L +GD + +  L   L+++ ++  D     G     G  
Sbjct: 115 YPEALAEAIPSQQEVAQSCFTLSVGDVISRDTLRERLLEEGFEEVDYVYSPGQVVYRGSL 174

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           ++IF S+     +R+  F ++I+ I  F   +   +   E  +I  
Sbjct: 175 VDIF-SYGSTYPYRIDFFDDEIDSIRRFDIESQLSVDQCERAEIAP 219



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 67/192 (34%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G      I        PV  R  R   E + D I     +  
Sbjct: 700 TLTLSATPIPRTLQFSLMGARDLSNINTPPRNRQPVTTRLIRWSQETIADAIGYELARHG 759

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++            +   + E    IR+   H  +   E  +I+ D    K+D+L+   +
Sbjct: 760 QVFFVHNRIESIHGVAGQIEECVPGIRIAIAHGRLTPSETEQILLDFAERKYDLLLATTI 819

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I  A + G     + L Q  GR  R               ++  A 
Sbjct: 820 IENGIDMPNVNTILINSAHRYGL----SDLHQLRGRVGRGSQRAYCYLITPPLGTLTEA- 874

Query: 702 DETTRRREKQLE 713
                RR K +E
Sbjct: 875 ---AARRVKAIE 883


>gi|326563433|gb|EGE13698.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 12P80B1]
          Length = 581

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 80/212 (37%), Gaps = 28/212 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G I E+       V   VE       +++     +    +  
Sbjct: 197 QTVMSSAT-----WDGAVGKIAERFTVNPEKVSIKVE----SAHIDESVYYCDDFNHKNN 247

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK   E L   L E   + RY+H ++   +R  I+ D++ G
Sbjct: 248 ILLQVLNNPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSG 307

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           K DVLV  ++   G+DI     V   D       R     +  IGR  R   + V +   
Sbjct: 308 KCDVLVATDVAARGIDISAISHVINYD-----LPRQVEDYVHRIGRCGRAGRTGVAVNLC 362

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           +I  + Q  ++   R  ++Q+  +    + P+
Sbjct: 363 SIDDNRQ--LEHINRYLKRQMSVSTIEGLEPR 392


>gi|215254416|gb|ACJ64200.1| vasa [Halocynthia roretzi]
          Length = 691

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 89/260 (34%), Gaps = 38/260 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF-----RLPSCMDNR 511
            P  L ++        ++   V +  +  +   +  R     + GF     RL +  D  
Sbjct: 372 TPGRLLDF--------INRGKVGLANLQYLILDEADRM---LDMGFEPEIRRLVAAPD-I 419

Query: 512 PLRFEEWNCLRPTTIVVSAT--PGSWELEQC---QGIIVEQIIRPTGLVDPP---VEIRS 563
           P ++         T++ SAT      EL         +   + R  G        V    
Sbjct: 420 PDKYNR------HTLMFSATFPNNIQELAHEFLRDDFLFLTVGRVGGACSDVTQTVLQVD 473

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              + E +   I    +   R L+ V TKR A+ L  +L +       +H +    ER +
Sbjct: 474 TNDKREKLMQLIADVEETKARTLVFVDTKRNADFLACFLSQEGCPTTSIHGDRLQREREQ 533

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            + D + G   +L+  ++   GLDIP+   V   D   E         +  IGR  R  N
Sbjct: 534 ALYDFKSGVCPILIATSVAARGLDIPKVEHVINFDLPSE-----IDEYVHRIGRTGRCGN 588

Query: 684 SK--VILYADTITKSIQLAI 701
                  Y D    ++  ++
Sbjct: 589 LGQATSFYCDDKDGALARSL 608


>gi|70948515|ref|XP_743756.1| RNA helicase-1 [Plasmodium chabaudi chabaudi]
 gi|56523410|emb|CAH76963.1| RNA helicase-1, putative [Plasmodium chabaudi chabaudi]
          Length = 633

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 98/235 (41%), Gaps = 22/235 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +++  +T+ Q   +   +  R   L + GF      +      + ++  R  T++ SAT
Sbjct: 330 MLNKKRMTLEQCRYLCFDEADR---LIDLGFE-----EEIRNTLDNFSNQR-QTLLFSAT 380

Query: 532 PGSWELEQCQGIIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                 E  +  +V  II   G      +D   E+   + + + +   + +  + G  +L
Sbjct: 381 MPKKIQEFAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEEFK-LSYLLQVLQKTGPPVL 439

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +    K+  +D+ EYL  + +    +H  +   ER+E I   R G+ DVLVG ++  +GL
Sbjct: 440 IFCENKKDVDDVHEYLLLKGVNAIAIHGSLGQTERLEAINLFRNGEKDVLVGTDVASKGL 499

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           D P    V   D  K+       + +  IGR  R   + +      I K+ + AI
Sbjct: 500 DFPSIEHVINYDMPKD-----IENYVHRIGRTGRCGKTGIATTF--INKNQEEAI 547


>gi|304390841|ref|ZP_07372793.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315656383|ref|ZP_07909272.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304325724|gb|EFL92970.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492942|gb|EFU82544.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 525

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 76/193 (39%), Gaps = 16/193 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--------DVY 572
           R  T++ SAT PG       + +     IR T   D    +R  +  V         +V 
Sbjct: 209 RRHTMLFSATMPGPVVALARRYMYQPTHIRATDPTDSSQTVRQVKQVVYRVHSLNKTEVI 268

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +GL  ++   TKR  + L++ L ER      +H ++    R   +R  R GK
Sbjct: 269 ARILQARNRGL-TIIFTRTKRTCQRLSDELAERGFATGAIHGDLGQNARERALRAFRHGK 327

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            DVLV  ++   G+D+ +   V   +           + I  IGR AR  N    I + D
Sbjct: 328 VDVLVATDVAARGIDVDDVTHVINYEC-----PEDDKTYIHRIGRTARAGNKGSAITFID 382

Query: 692 TITKSIQLAIDET 704
               +    I+ T
Sbjct: 383 WEDLTRWRVINRT 395


>gi|21465183|gb|AAM54703.1| vasa-like [Sparus aurata]
          Length = 395

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 11/140 (7%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V   S R Q+ D+            R ++ V TKR A+ +  YL +  +    +H + +
Sbjct: 193 QVTKFSKREQLLDLLKTTGT-----ERTMVFVETKRQADFIATYLCQEKVPTTSIHGDRE 247

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + + D R GK  V+V  ++   GLDIP+   V   D  KE         +  IGR
Sbjct: 248 QREREQALADFRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPKE-----IDEYVHRIGR 302

Query: 678 AARNVNSK-VILYADTITKS 696
             R  N+   + + D    +
Sbjct: 303 TGRCGNTGRAVSFYDPDNDA 322


>gi|313886626|ref|ZP_07820338.1| transcription-repair coupling factor [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923922|gb|EFR34719.1| transcription-repair coupling factor [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 1115

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 84/226 (37%), Gaps = 20/226 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I +L + +   +    L GVT S   F +A +      P +V+A +   A  +  + +  
Sbjct: 13  IVELRQALQQ-DHCVELEGVTASAPAFILATLAREH--PYLVIAEDADSAGYMLGDLEAL 69

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                         YY P A+         K        + +R     SL   +  ++VS
Sbjct: 70  ----------GVKAYYYPSAFNRHI-----KYGQREPAQEVLRAELLASLAAGDTPLIVS 114

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
               +   I S +  +Q    L +GD + +  L   L+++ ++  D     G     G  
Sbjct: 115 YPEALAEAIPSQQEVAQSCFTLSVGDVISRDTLRERLLEEGFEEVDYVYSPGQVVYRGSL 174

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           ++IF S+     +R+  F ++I+ I  F   +   +   E  +I  
Sbjct: 175 VDIF-SYGSTYPYRIDFFDDEIDSIRRFDIESQLSVDQCERAEIAP 219



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 67/192 (34%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G      I        PV  R  R   E + D I     +  
Sbjct: 700 TLTLSATPIPRTLQFSLMGARDLSNINTPPRNRQPVTTRLIRWSQETIADAIGYELARHG 759

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++            +   + E    IR+   H  +   E  +I+ D    K+D+L+   +
Sbjct: 760 QVFFVHNRIESIHGVAGQIEECVPGIRIAIAHGRLTPSETEQILLDFAERKYDLLLATTI 819

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I  A + G     + L Q  GR  R               ++  A 
Sbjct: 820 IENGIDMPNVNTILINSAHRYGL----SDLHQLRGRVGRGSQRAYCYLITPPLGTLTEA- 874

Query: 702 DETTRRREKQLE 713
                RR K +E
Sbjct: 875 ---AARRVKAIE 883


>gi|52078994|ref|YP_077785.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis ATCC 14580]
 gi|52784366|ref|YP_090195.1| YdbR [Bacillus licheniformis ATCC 14580]
 gi|81691189|sp|Q65N62|CSHA_BACLD RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|52002205|gb|AAU22147.1| probable ATP-dependent RNA helicase YdbR [Bacillus licheniformis
           ATCC 14580]
 gi|52346868|gb|AAU39502.1| YdbR [Bacillus licheniformis ATCC 14580]
          Length = 487

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 97/262 (37%), Gaps = 26/262 (9%)

Query: 523 PTTIVVSAT-PGSW---------ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             T++ SAT P              E  +    E  +         V  R     +  + 
Sbjct: 177 HQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLL 236

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D      Q     ++   TKR  ++LTE L  R      +H ++   +R+  +R  + G 
Sbjct: 237 D-----IQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGA 291

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            +VLV  ++   GLDI     V   D       +   S +  IGR  R   +   + +  
Sbjct: 292 IEVLVATDVAARGLDISGVTHVYNFDV-----PQDPESYVHRIGRTGRAGKTGMAMTFIT 346

Query: 692 TITKSIQLAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              K +  AI++TT+R+  +++    ++      Q   ++I  +I+   L    T    +
Sbjct: 347 PREKDMLRAIEQTTKRKMDRMKAPTLDEAIEGQQQVTVDRIRTIIEENNLNFYMTAAAEL 406

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
                S++     A +K + K+
Sbjct: 407 LEDHDSVTV--VAAAIKMMTKE 426


>gi|1169228|sp|P46942|DB10_NICSY RecName: Full=ATP-dependent RNA helicase-like protein DB10
 gi|563986|dbj|BAA03763.1| RNA helicase like protein DB10 [Nicotiana sylvestris]
          Length = 607

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 15/187 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--------DEI 575
            T++ +AT      +    ++V  +    G VD  V  +S    +E V         ++I
Sbjct: 324 QTLMYTATWPKGVRKIAADLLVNSVQVNIGNVDELVANKSITQHIEVVLPMEKQRRVEQI 383

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             + + G +I++   TK+M + L+  L  RN     +H +    ER  ++   R G+  V
Sbjct: 384 LRSKEPGSKIIIFCSTKKMCDQLSRNLT-RNFGAAAIHGDKSQGERDYVLSQFRAGRSPV 442

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI +  +V   D     F       +  IGR  R   S +     +   
Sbjct: 443 LVATDVAARGLDIKDIRVVINYD-----FPTGIEDYVHRIGRTGRAGASGLAYTFFSDQD 497

Query: 696 SIQLAID 702
           S + A+D
Sbjct: 498 S-KHALD 503


>gi|253771018|gb|ACT35657.1| vasa-like protein [Haliotis asinina]
          Length = 763

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 78/208 (37%), Gaps = 23/208 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSAR-TQVEDVYDEINLA 578
            T++ SAT    E+++     +   +  T    G  +  VE       +++      ++ 
Sbjct: 495 QTLMFSAT-FPTEIQKLAADFLNDYLFLTVGRVGGANTDVEQNFFEVDRLQKREKLCSIL 553

Query: 579 AQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            + G  + L+ V  KR A+ L  YL +       +H +    ER E +RD + G   +L+
Sbjct: 554 TESGSDKTLVFVEQKRNADFLASYLSQSGFPTTSIHGDRLQREREEALRDFKRGTAPILI 613

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
             ++   GLDIPE   V   D        S    +  IGR  R  N       Y+     
Sbjct: 614 ATSVAARGLDIPEVKHVVNYD-----LPSSIDEYVHRIGRTGRCGNLGKATSFYSHDSDS 668

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQ 723
           ++  ++              + H I P+
Sbjct: 669 ALVKSLVRIL---------TEAHQIVPE 687


>gi|144897813|emb|CAM74677.1| Transcription-repair coupling factor (superfamily II helicase)
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1098

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 119/347 (34%), Gaps = 48/347 (13%)

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
              G   V  +    +  ++G  ++   +++ L +  Y R D  +  G + V G  +++F
Sbjct: 58  GAAGSPRVRCWPSSGLSTQVGGRLDIDGIVAYLNRNGYGRTDTVMEPGEYAVRGGILDLF 117

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
           P    +   R+  FG+++E I  F P++ +    +++  +   S        +       
Sbjct: 118 PPGTPE-PVRLDFFGDELESIRSFDPMSQRTSGKLQSFSLVPVSEVTLDDAAIARF---- 172

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
                 R    E  G +     L        E +        +E++              
Sbjct: 173 ------RSTYREMFGVVSGPDPL-------YEAISQGIKFNGMEHWLPLFHDGM-----D 214

Query: 460 TLFEYIPEDSLLFVD---ESHVTIPQISGMYRGDFHRK---ATLAEYGFR---LPSCMDN 510
           TLF Y+P D+L  +D   E          +   D  R    A LAE G     LP   + 
Sbjct: 215 TLFAYVP-DALAVLDHQVEEARDARHALVLEYYDARRTITGAGLAESGMVYHPLPP--NR 271

Query: 511 RPLRFEEWNCL---RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
             L  +EW+ L   RP   +    P S       G       RP G     +  R     
Sbjct: 272 LYLEKDEWDRLLATRPCVALSPFGPASENGADAGG-------RP-GRDFSDIRARPDGNV 323

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
            E + + +   A++  R +L   +    + L+  L +  ++   + S
Sbjct: 324 YEALREHVG--AEKSRRSVLAAWSAGSRDRLSHVLADHGLKPVLVDS 368



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 11/181 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
             + ++ATP    L+     + E  +  T  VD  V    +      V  + + I     
Sbjct: 701 HVLTLTATPIPRTLQLALTGVKEMSVIATPPVDRLVVRTFVLPFDPVV--LREAILRERY 758

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G ++          + + + L +    V+    H  +   E  E++      ++DVL+ 
Sbjct: 759 RGGQVFYVCPRLADIDRVADRLAKLVPEVKCAIAHGRLTPTELEEVMTAFGDKQYDVLLS 818

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            N++  GLD+P    + I  AD  G  +    L Q  GR  R        +     K + 
Sbjct: 819 TNIIESGLDMPSVNTLIIHRADMFGLGQ----LYQLRGRVGRGKTRGYAYFTLPTDKVLS 874

Query: 699 L 699
            
Sbjct: 875 K 875


>gi|221487611|gb|EEE25843.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
          Length = 685

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 84/228 (36%), Gaps = 31/228 (13%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIR--- 550
            + + GF         P   + ++ +RP   T++ SAT               ++++   
Sbjct: 448 RMMDMGFE--------PQVRKIFSQVRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQV 499

Query: 551 ------PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
                     V   +E+ S+  Q++     +      G + L+   TKR  + L   L  
Sbjct: 500 GKADLQANANVTQRIEVVSS-NQLQHRLLSVLQEEVTGQKTLIFCETKRQCDQLCRELRY 558

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           R +R   +H + +  ER  I+ D R G  ++L+  ++   GLDI +   V   D  K   
Sbjct: 559 RQLRALAIHGDKEQRERDRILHDFRKGDCEILLATDVASRGLDIQDVKFVINYDVPK--- 615

Query: 665 LRSKTSLIQTIGRAARNVNSKVIL------YADTITKSIQLAIDETTR 706
             +  S I  IGR  R  N    +      +      ++   I E  R
Sbjct: 616 --NIESYIHRIGRTGRAGNKGTAISFFQYDFYSPEKVTMARKICEVMR 661


>gi|237830475|ref|XP_002364535.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|211962199|gb|EEA97394.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|221507408|gb|EEE33012.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
          Length = 685

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 84/228 (36%), Gaps = 31/228 (13%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIR--- 550
            + + GF         P   + ++ +RP   T++ SAT               ++++   
Sbjct: 448 RMMDMGFE--------PQVRKIFSQVRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQV 499

Query: 551 ------PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
                     V   +E+ S+  Q++     +      G + L+   TKR  + L   L  
Sbjct: 500 GKADLQANANVTQRIEVVSS-NQLQHRLLSVLQEEVTGQKTLIFCETKRQCDQLCRELRY 558

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           R +R   +H + +  ER  I+ D R G  ++L+  ++   GLDI +   V   D  K   
Sbjct: 559 RQLRALAIHGDKEQRERDRILHDFRKGDCEILLATDVASRGLDIQDVKFVINYDVPK--- 615

Query: 665 LRSKTSLIQTIGRAARNVNSKVIL------YADTITKSIQLAIDETTR 706
             +  S I  IGR  R  N    +      +      ++   I E  R
Sbjct: 616 --NIESYIHRIGRTGRAGNKGTAISFFQYDFYSPEKVTMARKICEVMR 661


>gi|293334655|ref|NP_001168054.1| hypothetical protein LOC100381784 [Zea mays]
 gi|223945725|gb|ACN26946.1| unknown [Zea mays]
          Length = 672

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 68/183 (37%), Gaps = 14/183 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           R  T++ +AT      +    ++   +    G  D  V  +S    VE +         D
Sbjct: 334 RRQTLMYTATWPKEVRKIASDLLNNPVQVNIGNTDQLVANKSITQHVEVIPHMEKSRRLD 393

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  +   G +I++   TKRM + L   L  R      +H +    ER  ++ D R G+ 
Sbjct: 394 QILRSQDPGSKIIIFCSTKRMCDQLARNLS-RQYGASAIHGDKSQAERDSVLNDFRSGRC 452

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VLV  ++   GLDI +  +V   D     F       +  IGR  R   +         
Sbjct: 453 PVLVATDVAARGLDIKDIRIVVNYD-----FPTGVEDYVHRIGRTGRAGATGSAYTFFGD 507

Query: 694 TKS 696
             S
Sbjct: 508 QDS 510


>gi|308178183|ref|YP_003917589.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745646|emb|CBT76618.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 642

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 7/190 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ++  V TK   EDL + L  R      ++ ++   +R   I +LR GK D+LV  ++   
Sbjct: 268 VIAFVRTKMATEDLADKLKARGFTAAAINGDIPQQQRERTIENLRSGKIDILVATDVAAR 327

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R       IL+     K +  AI++
Sbjct: 328 GLDVERISHVVNFD-----IPHDTESYVHRIGRTGRAGRKGDAILFMTPREKYLLRAIEK 382

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
            TR+   Q++     ++N + +++   + ID  +     TT   I  +  S  +   +  
Sbjct: 383 ATRQPVTQMQLPSLDSVNDRRIQK-FTDRIDKTISGQDLTTFREIVEKFASEHEDLDQLE 441

Query: 764 LKSLRKQMHL 773
           + +    M  
Sbjct: 442 IAAALALMAQ 451


>gi|313676238|ref|YP_004054234.1| transcription-repair coupling factor [Marivirga tractuosa DSM 4126]
 gi|312942936|gb|ADR22126.1| transcription-repair coupling factor [Marivirga tractuosa DSM 4126]
          Length = 1122

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 54/303 (17%), Positives = 114/303 (37%), Gaps = 19/303 (6%)

Query: 157 IAQLLKGIHSREKVQLLL--GVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           +  ++  +   E  Q +   G+ GS     +A       +  +++  +K  AA   ++ +
Sbjct: 16  LQTMVASLKPNE-DQTIQFKGLVGSLDAIAVAVSHLLNHQNQLIILHDKEEAAYFQNDLQ 74

Query: 215 NFFPHNAVEYFVSYYD-YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI 273
           N         F + Y   YQ +      D          E ++R       +     + I
Sbjct: 75  NLLDFKEPLLFPTSYKRPYQFD------DIENANVLMRAEILNR-----INNKSSTGEII 123

Query: 274 VVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCG 333
           V    +    + + +S        K+G+S++ + +   L    ++  D     G + + G
Sbjct: 124 VSYPEALSEKVINKKSLKLNTFSAKVGESLDVEFIAELLQTYDFEPTDFVYEPGQYAIRG 183

Query: 334 DSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLN 393
             I+IF S+  D  +R+ +FGN+I+ I  F   +      V+ I I  N        +  
Sbjct: 184 GIIDIF-SYASDEPYRIELFGNEIDSIRTFDVASQLSTDTVKQINIIPNVQTKLLEESRE 242

Query: 394 TAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN 453
           + ++YI    K+   + ++   +L  Q  ++      E+LETT   + +     ++    
Sbjct: 243 SLLEYIPNNTKIWFKDYKQTLDVLA-QYYDKASQSFKEILETTQQTKVV--LEPHMLFET 299

Query: 454 PGE 456
           P  
Sbjct: 300 PDS 302



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 8/168 (4%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G     +I+       PV         E + D I    Q+G 
Sbjct: 711 VLTLTATPIPRTLHFSLMGARDLSVIQTPPPNRQPVTTALHTFNEEILRDAIAFELQRGG 770

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E +   + +     R    H ++   +  +++     G++DVLV  N+
Sbjct: 771 QVFFVHNRIGDIEQVGNIILKLVPDARIGVAHGQMDGAKLEKVMMRFIEGEYDVLVSTNI 830

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           +  GLDIP    + I  A   G     + L Q  GR  R+ N K   Y
Sbjct: 831 IESGLDIPNANTIIINHAHMFG----MSDLHQMRGRVGRS-NKKAFCY 873


>gi|255003926|ref|ZP_05278727.1| transcription repair coupling factor (mfd) [Anaplasma marginale
           str. Virginia]
          Length = 1148

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 107/326 (32%), Gaps = 44/326 (13%)

Query: 172 LLLGVTGSGKTFTMAKV-IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           ++ GV        MA++ +E    P + +       A L    K F     V        
Sbjct: 33  VITGVAPEFGDMLMAQMCMEDRHTPFVFVVQEGTSLAHLAKTLKFFDRERDVFI------ 86

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV--SSVSCIYGIGSVE 288
                  +P+ D+   K  S +  +   R      +       V+  +S +    +    
Sbjct: 87  -------LPKWDSIPHKGVSPSSLVMATRMKCLLDISNAKAPYVMLTTSGAVAQKVLPAH 139

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           S +   + +  GD +    L+  LV   Y +       G+F V G+ ++IF   +++   
Sbjct: 140 SVASATITVAPGDGLSMDALVQHLVACGYTQSSAVREVGSFAVRGEIVDIFQP-IDNKPT 198

Query: 349 RVSMFGNDIEEISEFYPLTGQK-IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
           R+    + +E I  F   T       + ++ IY  S  +     LN              
Sbjct: 199 RIDFCYDAVESIRCFDLDTQITDGGALPSLVIYPASEVIKTEENLNRFYTRY-------- 250

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                       Q+         E + +   C   E +   L      +   T+F+Y+P 
Sbjct: 251 -----------MQQYPNPDPAFAEAMLSRQKCMGEEQWLPLL----QADELSTIFDYVP- 294

Query: 468 DSLLFVDE--SHVTIPQISGMYRGDF 491
           ++ L + E  S   + ++ G    D+
Sbjct: 295 NAKLVLAEQASEEVLRRLEGAQEEDY 320



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 17/186 (9%)

Query: 516 EEWNCLRP--TTIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVED 570
           E+   LR     + +SATP    L     GI    ++R  P G +   + I      +  
Sbjct: 748 EQLKKLRNDVHVLSLSATPIPRTLHMSLSGIKNLSVLRTPPMGRMAVDIAIIQYDGNI-- 805

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +   I     +G R+  T       +    DL + +    + V   H    T    +I+ 
Sbjct: 806 IKTAILDEVSRGGRVFFTCPFISDIDGVLADLQKLVPNVKVEVA--HGRTSTRALDKIMN 863

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D   GKF VL+  +++  G+DIP    + + +AD  G  +    L Q  GR  R+     
Sbjct: 864 DFFDGKFSVLLTTSIIESGIDIPFANTIIVHNADMFGLAQ----LYQLKGRVGRSTLKGY 919

Query: 687 ILYADT 692
             +  +
Sbjct: 920 AYFIVS 925


>gi|255002792|ref|ZP_05277756.1| transcription repair coupling factor (mfd) [Anaplasma marginale
           str. Puerto Rico]
          Length = 1152

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 107/326 (32%), Gaps = 44/326 (13%)

Query: 172 LLLGVTGSGKTFTMAKV-IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           ++ GV        MA++ +E    P + +       A L    K F     V        
Sbjct: 36  VITGVAPEFGDMLMAQMCMEDRHTPFVFVVQEGTSLAHLAKTLKFFDRERDVFI------ 89

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV--SSVSCIYGIGSVE 288
                  +P+ D+   K  S +  +   R      +       V+  +S +    +    
Sbjct: 90  -------LPKWDSIPHKGVSPSSLVMATRMKCLLDISNAKAPYVMLTTSGAVAQKVLPAH 142

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           S +   + +  GD +    L+  LV   Y +       G+F V G+ ++IF   +++   
Sbjct: 143 SVASATITVAPGDGLSMDALVQHLVACGYTQSSAVREVGSFAVRGEIVDIFQP-IDNKPT 201

Query: 349 RVSMFGNDIEEISEFYPLTGQK-IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
           R+    + +E I  F   T       + ++ IY  S  +     LN              
Sbjct: 202 RIDFCYDAVESIRCFDLDTQITDGGALPSLVIYPASEVIKTEENLNRFYTRY-------- 253

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                       Q+         E + +   C   E +   L      +   T+F+Y+P 
Sbjct: 254 -----------MQQYPNPDPAFAEAMLSRQKCMGEEQWLPLL----QADELSTIFDYVP- 297

Query: 468 DSLLFVDE--SHVTIPQISGMYRGDF 491
           ++ L + E  S   + ++ G    D+
Sbjct: 298 NAKLVLAEQASEEVLRRLEGAQEEDY 323



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 17/186 (9%)

Query: 516 EEWNCLRP--TTIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVED 570
           E+   LR     + +SATP    L     GI    ++R  P G +   + I      +  
Sbjct: 752 EQLKKLRNDVHVLSLSATPIPRTLHMSLSGIKNLSVLRTPPMGRMAVDIAIIQYDGNI-- 809

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +   I     +G R+  T       +    DL + +    + V   H    T    +I+ 
Sbjct: 810 IKTAILDEVSRGGRVFFTCPFISDIDGVLADLQKLVPNVKVEVA--HGRTSTRALDKIMN 867

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D   GKF VL+  +++  G+DIP    + + +AD  G  +    L Q  GR  R+     
Sbjct: 868 DFFDGKFSVLLTTSIIESGIDIPFANTIIVHNADMFGLAQ----LYQLKGRVGRSTLKGY 923

Query: 687 ILYADT 692
             +  +
Sbjct: 924 AYFIVS 929


>gi|222474820|ref|YP_002563235.1| transcription repair coupling factor (mfd) [Anaplasma marginale
           str. Florida]
 gi|222418956|gb|ACM48979.1| transcription repair coupling factor (mfd) [Anaplasma marginale
           str. Florida]
          Length = 1152

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 107/326 (32%), Gaps = 44/326 (13%)

Query: 172 LLLGVTGSGKTFTMAKV-IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           ++ GV        MA++ +E    P + +       A L    K F     V        
Sbjct: 36  VITGVAPEFGDMLMAQMCMEDRHTPFVFVVQEGTSLAHLAKTLKFFDRERDVFI------ 89

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV--SSVSCIYGIGSVE 288
                  +P+ D+   K  S +  +   R      +       V+  +S +    +    
Sbjct: 90  -------LPKWDSIPHKGVSPSSLVMATRMKCLLDISNAKAPYVMLTTSGAVAQKVLPAH 142

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           S +   + +  GD +    L+  LV   Y +       G+F V G+ ++IF   +++   
Sbjct: 143 SVASATITVAPGDGLSMDALVQHLVACGYTQSSAVREVGSFAVRGEIVDIFQP-IDNKPT 201

Query: 349 RVSMFGNDIEEISEFYPLTGQK-IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
           R+    + +E I  F   T       + ++ IY  S  +     LN              
Sbjct: 202 RIDFCYDAVESIRCFDLDTQITDGGALPSLVIYPASEVIKTEENLNRFYTRY-------- 253

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                       Q+         E + +   C   E +   L      +   T+F+Y+P 
Sbjct: 254 -----------MQQYPNPDPAFAEAMLSRQKCMGEEQWLPLL----QADELSTIFDYVP- 297

Query: 468 DSLLFVDE--SHVTIPQISGMYRGDF 491
           ++ L + E  S   + ++ G    D+
Sbjct: 298 NAKLVLAEQASEEVLRRLEGAQEEDY 323



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 17/186 (9%)

Query: 516 EEWNCLRP--TTIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVED 570
           E+   LR     + +SATP    L     GI    ++R  P G +   + I      +  
Sbjct: 752 EQLKKLRNDVHVLSLSATPIPRTLHMSLSGIKNLSVLRTPPMGRMAVDIAIIQYDGNI-- 809

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +   I     +G R+  T       +    DL + +    + V   H    T    +I+ 
Sbjct: 810 IKTAILDEVSRGGRVFFTCPFISDIDGVLADLQKLVPNVKVEVA--HGRTSTRALDKIMN 867

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D   GKF VL+  +++  G+DIP    + + +AD  G  +    L Q  GR  R+     
Sbjct: 868 DFFDGKFSVLLTTSIIESGIDIPFANTIIVHNADMFGLAQ----LYQLKGRVGRSTLKGY 923

Query: 687 ILYADT 692
             +  +
Sbjct: 924 AYFIVS 929


>gi|319648702|ref|ZP_08002913.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
 gi|317389121|gb|EFV69937.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
          Length = 516

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 97/262 (37%), Gaps = 26/262 (9%)

Query: 523 PTTIVVSAT-PGSW---------ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             T++ SAT P              E  +    E  +         V  R     +  + 
Sbjct: 157 HQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLL 216

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D      Q     ++   TKR  ++LTE L  R      +H ++   +R+  +R  + G 
Sbjct: 217 D-----IQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGA 271

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            +VLV  ++   GLDI     V   D       +   S +  IGR  R   +   + +  
Sbjct: 272 IEVLVATDVAARGLDISGVTHVYNFDV-----PQDPESYVHRIGRTGRAGKTGMAMTFIT 326

Query: 692 TITKSIQLAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              K +  AI++TT+R+  +++    ++      Q   ++I  +I+   L    T    +
Sbjct: 327 PREKDMLRAIEQTTKRKMDRMKAPTLDEAIEGQQQVTVDRIRTIIEENNLNFYMTAAAEL 386

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
                S++     A +K + K+
Sbjct: 387 LEDHDSVTV--VAAAIKMMTKE 406


>gi|50292931|ref|XP_448898.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74664283|sp|Q8TFK8|DED1_CANGA RecName: Full=ATP-dependent RNA helicase DED1
 gi|20086311|gb|AAM08102.1| DED1p [Candida glabrata]
 gi|49528211|emb|CAG61868.1| unnamed protein product [Candida glabrata]
          Length = 617

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 19/165 (11%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VE R   + + D+      AA      L+ V TKRMA+ LT++L  +N     +H +   
Sbjct: 384 VENRDKNSALLDLL-----AASNDNLTLIFVETKRMADQLTDFLIMQNFSATAIHGDRSQ 438

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER   +   R G+ ++LV   +   GLDIP    V   D             +  IGR 
Sbjct: 439 AERERALAAFRSGRANILVATAVAARGLDIPNVTHVINYD-----LPSDVDDYVHRIGRT 493

Query: 679 ARNVNSKVIL-YADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
            R  N+ V   + +    +I   + E         E N++  I P
Sbjct: 494 GRAGNTGVATAFFNRDNNNIVKGLYE------ILEEANQE--IPP 530


>gi|68076513|ref|XP_680176.1| RNA helicase-1 [Plasmodium berghei strain ANKA]
 gi|56501072|emb|CAH93553.1| RNA helicase-1, putative [Plasmodium berghei]
          Length = 632

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 97/235 (41%), Gaps = 22/235 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +++  +T+ Q   +   +  R   L + GF     + N    F      +  T++ SAT
Sbjct: 329 MLNKKRMTLEQCRYLCFDEADR---LIDLGFE--EEIRNVLDNFSS----QRQTLLFSAT 379

Query: 532 PGSWELEQCQGIIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                 E  +  +V  II   G      +D   E+   + + + +   + +  + G  +L
Sbjct: 380 MPRKIQEFAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEEFK-LSYLLQVLQKTGPPVL 438

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +    K+  +D+ EYL  + I    +H  +   ER+E I   R G+ DVLVG ++  +GL
Sbjct: 439 IFCENKKDVDDVHEYLLLKGINAIAIHGSLGQTERLEAINLFRNGEKDVLVGTDVASKGL 498

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           D P    V   D  K+       + +  IGR  R   + +      I K+ + AI
Sbjct: 499 DFPSIEHVINYDMPKD-----IENYVHRIGRTGRCGKTGIATTF--INKNQEEAI 546


>gi|255564033|ref|XP_002523015.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223537737|gb|EEF39357.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 956

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 16/190 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP---------VEIRSARTQVEDVY 572
           R  T++ +AT      +    ++V  +    G VD           VE+     + E   
Sbjct: 665 RRQTLMYTATWPKEVRKIANDLLVNPVQVNIGSVDELAANKSITQYVEVVPQMEK-ESRL 723

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            +I  A ++G ++++   TKR+ + L             +H +    ER  ++   R GK
Sbjct: 724 GQILRAQERGSKVIIFCSTKRLCDQLARS-IGHQFGAAAIHGDKSQGERDWVLNQFRSGK 782

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             +LV  ++   GLDI +  +V   D     F       +  IGR  R   + V + A  
Sbjct: 783 SPILVATDVAARGLDIKDIRVVINYD-----FPTGIEDYVHRIGRTGRAGATGVNVAAHM 837

Query: 693 ITKSIQLAID 702
           I  +I + +D
Sbjct: 838 IATTIWMVVD 847


>gi|253564911|ref|ZP_04842367.1| transcription-repair coupling factor [Bacteroides sp. 3_2_5]
 gi|251946376|gb|EES86753.1| transcription-repair coupling factor [Bacteroides sp. 3_2_5]
          Length = 1125

 Score =  100 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 77/196 (39%), Gaps = 16/196 (8%)

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           +E    P + +  +   A   Y +         + +F S +          R+  Y +K+
Sbjct: 49  VEKSPCPFVFILGDLEEAGYFYHDLTQVLGTERILFFPSSFR---------RSVKYGQKD 99

Query: 249 SSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           ++     + +R      L +  +  CIV    +    + S +  S+  ++L +G+ V+  
Sbjct: 100 AAN----EILRTEVLSRLQKGEEGLCIVTYPDALAEKVVSRQELSENTLKLHVGERVDTG 155

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
            +   L    ++  D     G + V G  I++F S   +  +R+  FGND+E I  F   
Sbjct: 156 FITDVLHSYGFEYVDYVYEPGQYAVRGSIIDVF-SFSSEYPYRIDFFGNDVESIRTFEVD 214

Query: 367 TGQKIRNVETIKIYAN 382
           +       E+I I  +
Sbjct: 215 SQLSKEKKESIVIVPD 230



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 67/190 (35%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +   +V  + D IN    +
Sbjct: 709 TLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFSEEV--IADAINFEMSR 766

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++ L         +L   +     + R+   H +++  E  +II       +DVL+  
Sbjct: 767 NGQVFLVNNRIANLPELKAMILRHIPDCRIAIGHGQMEPAELEQIIFGFVNYDYDVLIVT 826

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 827 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLSSLTP 882

Query: 700 AIDETTRRRE 709
              E  RR +
Sbjct: 883 ---EAKRRLQ 889


>gi|301163896|emb|CBW23451.1| putative transcription-repair coupling factor [Bacteroides fragilis
           638R]
          Length = 1125

 Score =  100 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 77/196 (39%), Gaps = 16/196 (8%)

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           +E    P + +  +   A   Y +         + +F S +          R+  Y +K+
Sbjct: 49  VEKSPCPFVFILGDLEEAGYFYHDLTQVLGTERILFFPSSFR---------RSVKYGQKD 99

Query: 249 SSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           ++     + +R      L +  +  CIV    +    + S +  S+  ++L +G+ V+  
Sbjct: 100 AAN----EILRTEVLSRLQKGEEGLCIVTYPDALAEKVVSRQELSENTLKLHVGERVDTG 155

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
            +   L    ++  D     G + V G  I++F S   +  +R+  FGND+E I  F   
Sbjct: 156 FITDVLHSYGFEYVDYVYEPGQYAVRGSIIDVF-SFSSEYPYRIDFFGNDVESIRTFEVD 214

Query: 367 TGQKIRNVETIKIYAN 382
           +       E+I I  +
Sbjct: 215 SQLSKEKKESIVIVPD 230



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 67/190 (35%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +   +V  + D IN    +
Sbjct: 709 TLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFSEEV--IADAINFEMSR 766

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++ L         +L   +     + R+   H +++  E  +II       +DVL+  
Sbjct: 767 NGQVFLVNNRIANLPELKAMILRHIPDCRIAIGHGQMEPAELEQIIFGFVNYDYDVLIAT 826

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 827 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLSSLTP 882

Query: 700 AIDETTRRRE 709
              E  RR +
Sbjct: 883 ---EAKRRLQ 889


>gi|60682433|ref|YP_212577.1| putative transcription-repair coupling factor [Bacteroides fragilis
           NCTC 9343]
 gi|265766134|ref|ZP_06094175.1| transcription-repair coupling factor [Bacteroides sp. 2_1_16]
 gi|60493867|emb|CAH08658.1| putative transcription-repair coupling factor [Bacteroides fragilis
           NCTC 9343]
 gi|263253802|gb|EEZ25267.1| transcription-repair coupling factor [Bacteroides sp. 2_1_16]
          Length = 1125

 Score =  100 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 77/196 (39%), Gaps = 16/196 (8%)

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           +E    P + +  +   A   Y +         + +F S +          R+  Y +K+
Sbjct: 49  VEKSPCPFVFILGDLEEAGYFYHDLTQVLGTERILFFPSSFR---------RSVKYGQKD 99

Query: 249 SSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           ++     + +R      L +  +  CIV    +    + S +  S+  ++L +G+ V+  
Sbjct: 100 AAN----EILRTEVLSRLQKGEEGLCIVTYPDALAEKVVSRQELSENTLKLHVGERVDTG 155

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
            +   L    ++  D     G + V G  I++F S   +  +R+  FGND+E I  F   
Sbjct: 156 FITDVLHSYGFEYVDYVYEPGQYAVRGSIIDVF-SFSSEYPYRIDFFGNDVESIRTFEVD 214

Query: 367 TGQKIRNVETIKIYAN 382
           +       E+I I  +
Sbjct: 215 SQLSKEKKESIVIVPD 230



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 67/190 (35%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +   +V  + D IN    +
Sbjct: 709 TLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFSEEV--IADAINFEMSR 766

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++ L         +L   +     + R+   H +++  E  +II       +DVL+  
Sbjct: 767 NGQVFLVNNRIANLPELKAMILRHIPDCRIAIGHGQMEPAELEQIIFGFVNYDYDVLIAT 826

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 827 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLSSLTP 882

Query: 700 AIDETTRRRE 709
              E  RR +
Sbjct: 883 ---EAKRRLQ 889


>gi|53714414|ref|YP_100406.1| transcription-repair coupling factor [Bacteroides fragilis YCH46]
 gi|52217279|dbj|BAD49872.1| transcription-repair coupling factor [Bacteroides fragilis YCH46]
          Length = 1125

 Score =  100 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 77/196 (39%), Gaps = 16/196 (8%)

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           +E    P + +  +   A   Y +         + +F S +          R+  Y +K+
Sbjct: 49  VEKSPCPFVFILGDLEEAGYFYHDLTQVLGTERILFFPSSFR---------RSVKYGQKD 99

Query: 249 SSINEQIDRMRHSATRSLLERND--CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
           ++     + +R      L +  +  CIV    +    + S +  S+  ++L +G+ V+  
Sbjct: 100 AAN----EILRTEVLSRLQKGEEGLCIVTYPDALAEKVVSRQELSENTLKLHVGERVDTG 155

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
            +   L    ++  D     G + V G  I++F S   +  +R+  FGND+E I  F   
Sbjct: 156 FITDVLHSYGFEYVDYVYEPGQYAVRGSIIDVF-SFSSEYPYRIDFFGNDVESIRTFEVD 214

Query: 367 TGQKIRNVETIKIYAN 382
           +       E+I I  +
Sbjct: 215 SQLSKEKKESIVIVPD 230



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 67/190 (35%), Gaps = 14/190 (7%)

Query: 525 TIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           T+ ++ATP    L+        +      P        E+ +   +V  + D IN    +
Sbjct: 709 TLTMTATPIPRTLQFSLMGARDLSVISTPPPNRYPIQTEVHTFSEEV--IADAINFEMSR 766

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++ L         +L   +     + R+   H +++  E  +II       +DVL+  
Sbjct: 767 NGQVFLVNNRIANLPELKAMILRHIPDCRIAIGHGQMEPAELEQIIFGFVNYDYDVLIAT 826

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I  A   G     + L Q  GR  R+              S+  
Sbjct: 827 TIIESGIDIPNANTIIINQAQNFGL----SDLHQMRGRVGRSNKKAFCYLLAPPLSSLTP 882

Query: 700 AIDETTRRRE 709
              E  RR +
Sbjct: 883 ---EAKRRLQ 889


>gi|242051919|ref|XP_002455105.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
 gi|241927080|gb|EES00225.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
          Length = 673

 Score =  100 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 67/183 (36%), Gaps = 14/183 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           R  T++ +AT           ++   +    G  D  V  +S    VE +         D
Sbjct: 334 RRQTLMYTATWPKEVRRIASDLLNNPVQVNIGNTDQLVANKSITQHVEVIPHMEKSRRLD 393

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  +   G +I++   TKRM + L   L  R      +H +    ER  ++ D R G+ 
Sbjct: 394 QILRSQDPGSKIIIFCSTKRMCDQLARNLS-RQYGASAIHGDKSQSERDSVLNDFRSGRC 452

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VLV  ++   GLDI +  +V   D     F       +  IGR  R   +         
Sbjct: 453 PVLVATDVAARGLDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGRAGATGSAYTFFGD 507

Query: 694 TKS 696
             S
Sbjct: 508 QDS 510


>gi|295672658|ref|XP_002796875.1| ATP-dependent RNA helicase DED1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226282247|gb|EEH37813.1| ATP-dependent RNA helicase DED1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 683

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 13/189 (6%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV---DPPVEIR----SARTQVEDV 571
           +     T++ SAT      +  +  + + I    G V      +  R     +    +  
Sbjct: 387 DKHFRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRVIECDSDKDKDSA 446

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             +I  +   GL  L+ V TKR A+ L+++L +  +    +H +    ER   +   R G
Sbjct: 447 LLDILCSDSTGL-TLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTG 505

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV   +   GLDIP    V   D   E         +  IGR  R  N+ +     
Sbjct: 506 RCPILVATAVAARGLDIPNVTHVINYDLPNE-----IDDYVHRIGRTGRAGNTGLSTAFF 560

Query: 692 TITKSIQLA 700
           + +K+ ++A
Sbjct: 561 SRSKNFKIA 569


>gi|298345284|ref|YP_003717971.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 43063]
 gi|315655703|ref|ZP_07908601.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 51333]
 gi|298235345|gb|ADI66477.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 43063]
 gi|315489767|gb|EFU79394.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 51333]
          Length = 525

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 75/191 (39%), Gaps = 16/191 (8%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--------DVYDE 574
            T++ SAT PG       + +     IR T   D    +R  +  V         +V   
Sbjct: 211 HTMLFSATMPGPVVALARRYMYQPTHIRATDPTDSSQTVRQVKQVVYRVHSLNKTEVIAR 270

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I  A  +GL  ++   TKR  + L++ L ER      +H ++    R   +R  R GK D
Sbjct: 271 ILQARNRGL-TIIFTRTKRTCQRLSDELAERGFATGAIHGDLGQNARERALRAFRHGKVD 329

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           VLV  ++   G+D+ +   V   +           + I  IGR AR  N    I + D  
Sbjct: 330 VLVATDVAARGIDVDDVTHVINYEC-----PEDDKTYIHRIGRTARAGNKGSAITFIDWE 384

Query: 694 TKSIQLAIDET 704
             +    I+ T
Sbjct: 385 DLTRWRVINRT 395


>gi|296332826|ref|ZP_06875286.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673172|ref|YP_003864844.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150106|gb|EFG90995.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411416|gb|ADM36535.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 494

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 96/262 (36%), Gaps = 26/262 (9%)

Query: 523 PTTIVVSAT-PGSW---------ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             T++ SAT P            E E  +    E  +         V+ R     +  + 
Sbjct: 177 HQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLL 236

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D      Q     ++   TKR  ++L E L  R      +H ++   +R+  +R  + G 
Sbjct: 237 D-----IQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGA 291

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            +VLV  ++   GLDI     V   D       +   S +  IGR  R   +   + +  
Sbjct: 292 IEVLVATDVAARGLDISGVTHVYNFDV-----PQDPESYVHRIGRTGRAGKTGMAMTFIT 346

Query: 692 TITKSIQLAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              KS+  AI++TT+R+  +++    ++      Q   E++   I    L    T    +
Sbjct: 347 PREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAEL 406

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
                +++     A +K   K+
Sbjct: 407 LEDHDAVTV--VAAAIKMATKE 426


>gi|16077525|ref|NP_388339.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|1881268|dbj|BAA19295.1| ydbR [Bacillus subtilis]
 gi|2632758|emb|CAB12265.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 511

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 96/262 (36%), Gaps = 26/262 (9%)

Query: 523 PTTIVVSAT-PGSW---------ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             T++ SAT P            E E  +    E  +         V+ R     +  + 
Sbjct: 194 HQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLL 253

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D      Q     ++   TKR  ++L E L  R      +H ++   +R+  +R  + G 
Sbjct: 254 D-----IQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGA 308

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            +VLV  ++   GLDI     V   D       +   S +  IGR  R   +   + +  
Sbjct: 309 IEVLVATDVAARGLDISGVTHVYNFDV-----PQDPESYVHRIGRTGRAGKTGMAMTFIT 363

Query: 692 TITKSIQLAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              KS+  AI++TT+R+  +++    ++      Q   E++   I    L    T    +
Sbjct: 364 PREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAEL 423

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
                +++     A +K   K+
Sbjct: 424 LEDHDAVTV--VAAAIKMATKE 443


>gi|209879417|ref|XP_002141149.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556755|gb|EEA06800.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 590

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 24/222 (10%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            + +  VT+ Q       +  R   L E GF      +     F+ ++  R  T++ SAT
Sbjct: 289 MLRKKKVTLYQCRYFCMDEADR---LTEAGFE-----EAVRYIFDNFHERR-QTVLFSAT 339

Query: 532 PGSWELEQCQGIIVEQIIRPTGL-------VDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
                 E  +  +V+ I+   G        V   +E      ++  +   +   A    R
Sbjct: 340 MPQKTQEFTRTALVDPIVVNVGRAGATTLNVLQELEYVRQECRLPHILQSLQKTAP---R 396

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K+  +++ EYL  + ++   +HS +   +R + +   RLG  DVL+G ++  +
Sbjct: 397 VLIFCENKKDVDEIHEYLLLKGVKAAAIHSGLSQEQRRDSVEQFRLGLKDVLIGTDVASK 456

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           GLD P    V   D  KE       + +  IGR  R  +  V
Sbjct: 457 GLDFPNIHHVINYDMPKE-----IENYVHRIGRTGRGDSVGV 493


>gi|305681933|ref|ZP_07404737.1| transcription-repair coupling factor [Corynebacterium matruchotii
           ATCC 14266]
 gi|305658406|gb|EFM47909.1| transcription-repair coupling factor [Corynebacterium matruchotii
           ATCC 14266]
          Length = 1238

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 74/209 (35%), Gaps = 19/209 (9%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
           A   P +V+      A  L +E K     + V +F ++ +    E   P  D    + + 
Sbjct: 59  AHHTPLLVVTATGREAEDLTAELKAM-WGDQVAWFPAW-ETLPHERLSPAADVAGTR-AK 115

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           I   +  +R   T +        ++ +      +            L +G   +  +L  
Sbjct: 116 ILHNLANLRIVVTAA--RGVCQPILETNPGRDPL-----------TLTVGHDYDFTDLTH 162

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV + YK  D+   RG F   G  I+IFP+  E    R   +G+++ ++  F     + 
Sbjct: 163 HLVFKAYKHVDLVARRGEFATRGGIIDIFPTTGE-HPIRAEFWGDELTDLRAFSVADQRA 221

Query: 371 IRNVETI--KIYANSHYVTPRPTLNTAMK 397
             +++     +Y     +        A +
Sbjct: 222 FPDLDYPAVDVYPARELLITDDVAGRAAE 250



 Score = 41.2 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 69/204 (33%), Gaps = 23/204 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + ++ PP +     T V     + +   I    
Sbjct: 802 VLTMSATPIPRTLEMSMAGIREM----STILTPPEDRHPILTYVGAQEEKQIAAAIRREL 857

Query: 580 QQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +  ++          E    +L   + E  I V   H ++        ++     ++DV
Sbjct: 858 LRDGQVFFVHNKVSDIEKKARELRNLVPEARIVVA--HGQMSEEVLERTVQGFWDREYDV 915

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  GLDI     + + +A   G  +    L Q  GR  R+ +     +      
Sbjct: 916 LVCTTIVETGLDIANANTLIVENAHHMGLSQ----LHQLRGRVGRSRSRGYAYFLYPKGT 971

Query: 696 SIQLAIDETTRRREKQLEHNKKHN 719
                + ET+  R   +  N    
Sbjct: 972 ----TLTETSYDRLATIAQNNDLG 991


>gi|194015931|ref|ZP_03054546.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Bacillus pumilus ATCC 7061]
 gi|194012286|gb|EDW21853.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Bacillus pumilus ATCC 7061]
          Length = 496

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 96/261 (36%), Gaps = 24/261 (9%)

Query: 523 PTTIVVSAT-PGSW---------ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             T++ SAT P              E  +    E  +         +  R     +  + 
Sbjct: 177 HQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLDIHERKKFDTLTRLL 236

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D      Q     ++   TKR  ++LTE L  R      +H ++   +R+  +R  + G 
Sbjct: 237 D-----IQSPELSIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGS 291

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            DVLV  ++   GLDI     V   D  ++    S    I   GRA R      + +   
Sbjct: 292 IDVLVATDVAARGLDISGVTHVYNFDVPQD--PESYVHRIGRTGRAGRTG--MAVTFITP 347

Query: 693 ITKSIQLAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
             K +  AI++TT+R+  +++    ++      Q   +++  +I    L    T    + 
Sbjct: 348 REKDMLRAIEQTTKRKMDRMKEPTLDEAIEGQQQVTIDRLRTIISENNLNFYMTAAAELL 407

Query: 750 AQQLSLSKKKGKAHLKSLRKQ 770
               S++     A +K + K+
Sbjct: 408 EDHDSVTV--VAAAIKMMTKE 426


>gi|40891625|gb|AAR37337.1| vasa-like protein [Crassostrea gigas]
          Length = 758

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 73/187 (39%), Gaps = 20/187 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E+++  G  +   +  T          +     E+   + +   + D 
Sbjct: 498 QTLMFSAT-FPEEIQKMAGDFLNDYLFLTVGRVGGACTDVTQTVYEV-DRQEKRSRLCDI 555

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +        + L+ V  KR A+ L  YL +       +H +    ER E +RD +LGK  
Sbjct: 556 LTETGS--EKTLVFVEQKRNADFLASYLSQNGFPTTSIHGDRLQAEREEALRDFKLGKAP 613

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADT 692
           VL+  ++   GLDIP    V   D       +S    +  IGR  R  N    +  Y++ 
Sbjct: 614 VLIATSVAARGLDIPLVKHVINYD-----LPQSIDEYVHRIGRTGRCGNLGKAISFYSND 668

Query: 693 ITKSIQL 699
              ++  
Sbjct: 669 TDGALAK 675


>gi|300121126|emb|CBK21507.2| unnamed protein product [Blastocystis hominis]
          Length = 518

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 20/188 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV---DPPVEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT            +++ +    G V      +E R    +  D    +    +
Sbjct: 326 QTLMFSATFPDEIQRLAGDFLIDYVFLAVGRVGGAAQDIEQRVIYVEDADKDSYLLHELE 385

Query: 581 Q--GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                RIL+ V TKR A+ L  YL  ++ +   +H +    +R + +   +L +  +LV 
Sbjct: 386 NWGNGRILIFVETKRKADILQRYLTTQHFQAASIHGDRSQADREDALSAFKLNRVQILVA 445

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDIP+  LV   D       ++    +  IGR  R  N+ V +          
Sbjct: 446 TDVAARGLDIPDVSLVINYDT-----PQNIEDYVHRIGRTGRAGNTGVAISF-------- 492

Query: 699 LAIDETTR 706
             I+E  R
Sbjct: 493 --INENNR 498


>gi|257454198|ref|ZP_05619468.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus
           SK60]
 gi|257448371|gb|EEV23344.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus
           SK60]
          Length = 777

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 22/213 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---------EDVYDE 574
            TI+ SAT      +   G I E   +    ++  VE      +V           + ++
Sbjct: 264 QTIMSSAT-----WDGPVGKIAESFTKDPERINIKVETAHIDEKVYFCDNFDHKNKLLEQ 318

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +    ++G   ++   TKR +E++ E L + + +  Y+H ++   +R  I+ DLR GKFD
Sbjct: 319 LICDPERGQ-AIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKRNRIVSDLRSGKFD 377

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           ++V  ++   GLD+P    V   D       R     +  IGR+ R   + + +   +  
Sbjct: 378 IVVATDVAARGLDLPNITHVFNYD-----LPRQVEDYVHRIGRSGRAGRTGIAINLCSRD 432

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
              Q       R  ++ +   +   + P+ V++
Sbjct: 433 DRRQFG--NIARYLKRDINEAQVEGLEPRFVEK 463


>gi|221308280|ref|ZP_03590127.1| hypothetical protein Bsubs1_02593 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312602|ref|ZP_03594407.1| hypothetical protein BsubsN3_02569 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317526|ref|ZP_03598820.1| hypothetical protein BsubsJ_02533 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321802|ref|ZP_03603096.1| hypothetical protein BsubsS_02604 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321314132|ref|YP_004206419.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|134039178|sp|P96614|CSHA_BACSU RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|291482867|dbj|BAI83942.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020406|gb|ADV95392.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis BSn5]
          Length = 494

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 96/262 (36%), Gaps = 26/262 (9%)

Query: 523 PTTIVVSAT-PGSW---------ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             T++ SAT P            E E  +    E  +         V+ R     +  + 
Sbjct: 177 HQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLL 236

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D      Q     ++   TKR  ++L E L  R      +H ++   +R+  +R  + G 
Sbjct: 237 D-----IQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGA 291

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            +VLV  ++   GLDI     V   D       +   S +  IGR  R   +   + +  
Sbjct: 292 IEVLVATDVAARGLDISGVTHVYNFDV-----PQDPESYVHRIGRTGRAGKTGMAMTFIT 346

Query: 692 TITKSIQLAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              KS+  AI++TT+R+  +++    ++      Q   E++   I    L    T    +
Sbjct: 347 PREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAEL 406

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
                +++     A +K   K+
Sbjct: 407 LEDHDAVTV--VAAAIKMATKE 426


>gi|323136889|ref|ZP_08071969.1| transcription-repair coupling factor [Methylocystis sp. ATCC 49242]
 gi|322397650|gb|EFY00172.1| transcription-repair coupling factor [Methylocystis sp. ATCC 49242]
          Length = 1181

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 72/466 (15%), Positives = 129/466 (27%), Gaps = 66/466 (14%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAP-----NKILAAQLYSEFKNFFPHNAVEYFVSYYDY 231
           TGSG     A      +   ++ +      +  L A L            V +     D 
Sbjct: 8   TGSGAAELAAAKKRLAKGEKLLFSHAPEGFDAFLCADLARALAREAEGRPVVFVHVARDS 67

Query: 232 YQPEAY---------------VPRTDTYIEKESSINEQIDRMRHSATRSLL-----ERND 271
            +  A+               +P  D       S +  +   R +A   L      E   
Sbjct: 68  TRSAAFREALRFANPDVEILDIPGWDCQPYDRVSPHANVVARRMTALSRLARASSSEERP 127

Query: 272 CIVVSSVSCIYGIGSVESYSQM-IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            +V ++  C+                   G+ V+  EL   L    + R         + 
Sbjct: 128 RVVTTTADCLLQRVPPRKMVAAESFSAAPGNVVKLDELALWLEANGFLRASTVRETSEYA 187

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
             G  I++F   +     R+  FG+ +E I  F P T +    +  + +   S       
Sbjct: 188 QRGGIIDLFSPGM-PAPIRLDFFGDTLESIRSFDPETQRATGQLRALDLTPMSELRLTSD 246

Query: 391 TLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT 450
           T+             R     + G       L        E +        +E++     
Sbjct: 247 TMRRF----------RQNYAARFGGQTRGDAL-------YEAVSEGRRHHGMEHWLPLFY 289

Query: 451 GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
            R       TLF+Y+  D+ L +D     +   +              ++   L     N
Sbjct: 290 ERM-----DTLFDYLG-DAPLMLD---ALVEDAASERLKQIADYYDARKFSHDLDPAASN 340

Query: 511 RP--------LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
                     L  EEW+           +P + E    +G  ++   RP G    P    
Sbjct: 341 YKPLEPRELYLTSEEWSDALAERASAQFSPFASE----RGDAIDCGARP-GRDFAPERNE 395

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
                 +   D +      G  +++   +    E L   L E  +R
Sbjct: 396 PDVNVFQAAADHVQALRGSGRNVIVAGWSDGSCERLGHVLEEHGLR 441



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 94/258 (36%), Gaps = 37/258 (14%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
              + +SATP    L+     + E  +  T  VD    +RS  +  + +   + +     +
Sbjct: 781  HVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRLA-VRSFISPFDPLIVREALLRERYR 839

Query: 582  GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
            G +           E+   +L E     +++  H ++   E  + +     G+FD+L+  
Sbjct: 840  GGQAFFVCPRIEDLEEAAAFLRENLAEAKFVIAHGQMSPSELEDKMSAFYDGRFDILLST 899

Query: 640  NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             ++  GLDIP    + +  AD  G  +    L Q  GR  R+      L+     ++   
Sbjct: 900  TIVESGLDIPSANTLIVWRADMFGLAQ----LYQLRGRVGRSKTRAYALFTTPANRA--- 952

Query: 700  AIDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                                I PQ+ K  ++++ +D +       ++        +L  +
Sbjct: 953  --------------------ITPQAQKRLEVLQTLDTLGAGFQLASHDLDIRGAGNLLGE 992

Query: 759  KGKAHLK----SLRKQMH 772
            +   H+K     L +QM 
Sbjct: 993  EQSGHIKEVGYELYQQML 1010


>gi|332295132|ref|YP_004437055.1| transcription-repair coupling factor [Thermodesulfobium narugense
           DSM 14796]
 gi|332178235|gb|AEE13924.1| transcription-repair coupling factor [Thermodesulfobium narugense
           DSM 14796]
          Length = 1111

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/327 (18%), Positives = 124/327 (37%), Gaps = 43/327 (13%)

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
           +  +        + A+ +  N+ ++   Y+  K     ++ E F             P  
Sbjct: 31  SLFLVHYFAQKNKKALFVYKNEKVSHDAYNLLKRSSKIDSEEGFNFL--------LYPAW 82

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
           D    +  S + +I   R  A     ++ D  ++SSV  I    S +  +     LK   
Sbjct: 83  DILFGERLSPSFRIISQRIIA-----QKKDAPLISSVKAIL---SPKEDNFQRFFLKKNI 134

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
            ++++EL++ L K  Y R+ +  + G F V G  +++FP + ED   R+    N I  I 
Sbjct: 135 EIDREELINLLSK-NYTRKSLCELPGDFAVRGMLLDVFPFYSED-PIRLIFSDNTISAIK 192

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
            F P   + I+ V++  +            +  A+K++ +E +          +      
Sbjct: 193 YFNPEDQRTIKEVDSFNLI-----------VIEALKFLPDEKEKIRKFFNALSKEERD-- 239

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
               I+ +++ +E   +   IENY  +       +    L ++   D++ FVD+  V   
Sbjct: 240 ---IISEEIKNIENDINFSGIENYLYF-----KNDLQFILDDF---DTIFFVDKDQVQSE 288

Query: 482 QISGMYRGDFHRKATLAEYGFR-LPSC 507
               +   +  R   +    +  +PS 
Sbjct: 289 ATRLLQEIEKLRSFQIENKIYVKMPSF 315



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 73/209 (34%), Gaps = 17/209 (8%)

Query: 516 EEWNCLRPT--TIVVSATPGSWELEQCQG---IIVEQIIRPTGLVDPPVEIRSARTQVED 570
           E++  LR     + +SATP    L         I      P   +     +   +  +  
Sbjct: 724 EQFKKLRTELDVLSLSATPIPRTLNMALSGLRDISTIFTPPKNRMPIRTIVSPFKDTI-- 781

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDL 628
           V + I     +G +I +         +L E +     N+    +H +    E    +   
Sbjct: 782 VREAILRELDRGGQIFVVDARISNLNNLKEKIESIVGNVSCAVLHGQKSPQEISTTLERF 841

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              + D+L+   +L  GLDIPE   + I +AD  G       L Q  GR  R+       
Sbjct: 842 LNKEIDLLISTAILESGLDIPEVNTIIINNADLFGLSE----LYQLRGRVGRSFKQGYAY 897

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKK 717
           +      S    I E  +RR + ++ N  
Sbjct: 898 FLY----SSDKKITEDAKRRLQTIQMNSA 922



 Score = 37.8 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 18/159 (11%)

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY------DEINLAAQQG 582
           S  P   ELE  +    E+       ++      S    ++ +        +  +A +  
Sbjct: 567 SKNPTIEELELKESFGYEETPDQERAIEDVFIDMSKPYPMDRLIVADAGFGKTEIAIRAA 626

Query: 583 LRILL-----------TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            R +L           T+L  +             +RV  +    ++  + +I+ DL+  
Sbjct: 627 YRAVLASRQVALLAPTTLLADQHYRTFKNRFDPLGVRVEVLSRISRSGNKNKILEDLKEN 686

Query: 632 KFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKT 669
           K D+++G + LL +G+     GL+ I +  K G ++ + 
Sbjct: 687 KIDIIIGTHSLLSKGIKFKNLGLLIIDEEQKFGVMQKEQ 725


>gi|296112376|ref|YP_003626314.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis RH4]
 gi|295920070|gb|ADG60421.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis RH4]
          Length = 577

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 28/212 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G I E        V   VE       +++     +    +  
Sbjct: 197 QTVMSSAT-----WDGAVGKIAESFTVNPEKVSIKVE----SAHIDESVYYCDDFNHKNN 247

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK   E L   L E   + RY+H ++   +R  I+ D++ G
Sbjct: 248 ILLQVLNNPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSG 307

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           K D+LV  ++   G+DI     V   D       R     +  IGR  R   + V +   
Sbjct: 308 KCDLLVATDVAARGIDISAISHVINYD-----LPRQVEDYVHRIGRCGRAGRTGVAVNLC 362

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           +I  + Q  ++   R  ++Q+  +    + P+
Sbjct: 363 SIDDNRQ--LEHINRYLKRQMSVSTIEGLEPR 392


>gi|301602401|gb|ADK79106.1| vasa-like protein [Dicentrarchus labrax]
          Length = 637

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V   S R Q+ D+     +      R ++ V TKR A+ +  YL +  +    +H + +
Sbjct: 433 QVTKFSKREQLLDLLKTTGM-----ERTMVFVETKRQADFIATYLCQEKVPTTSIHGDRE 487

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + + D R GK  VLV  ++   GLDIP+   V   D        +    +  IGR
Sbjct: 488 QREREQALADFRSGKCPVLVATSVAARGLDIPDVQHVVNFD-----LPNNIDEYVHRIGR 542

Query: 678 AARNVNSK-VILYADTITKS 696
             R  N+   + + D  +  
Sbjct: 543 TGRCGNTGRAVSFFDPDSDD 562


>gi|51473776|ref|YP_067533.1| transcription-repair coupling factor [Rickettsia typhi str.
           Wilmington]
 gi|81856448|sp|Q9AKD5|MFD_RICTY RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|13235382|emb|CAC33732.1| Mfd protein [Rickettsia typhi]
 gi|51460088|gb|AAU04051.1| transcription-repair coupling factor (superfamily helicase II)
           [Rickettsia typhi str. Wilmington]
          Length = 1120

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 119/366 (32%), Gaps = 53/366 (14%)

Query: 183 FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTD 242
           F +    + + +  I+   N+  A +LY +   F  +  + YF             P  D
Sbjct: 14  FAIDNFTKHLNQDFILSVNNEEEALKLYKQAFFFSSNENIYYF-------------PSYD 60

Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSC--IYGIGSVESYSQMIVQLKIG 300
           T     +S N  I   R      L+  N+  ++ + +   +  +   + +S+  ++L   
Sbjct: 61  TIPYDYTSPNTNIISRRAETLTKLITNNNSKLLITHAANLLNKLPPKDFFSKYFLKLYPK 120

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
                 EL   LV+  + R       G F V G+ I+I        A+R++   + IE I
Sbjct: 121 IKFTIDELSMLLVENSFTRNISSNDVGEFSVRGEIIDIILPG--PKAYRINFSWDYIESI 178

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
            EF   T    +    + I   S  V    T+                 L   G      
Sbjct: 179 KEFDINTQISTKYCTELVISPVSEIVLNSKTIGNFKNN----------YLRNFGVNHTDN 228

Query: 421 RLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
            L        E + +       E            +   +L +Y+ +   +F + S   I
Sbjct: 229 PL-------YEAVISGRKFPGYEQLLPLFY-----DSCSSLVDYLNDPICIFDNLSKQEI 276

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN-CLRPTTIVVSATPGSWELEQ 539
                      +         F L     N+ L+   +   L P ++  +A+  +  LEQ
Sbjct: 277 -------LEFENSC-----NDFYLARSNANK-LKVNNFYPALSPASLYFTASAITELLEQ 323

Query: 540 CQGIIV 545
              I++
Sbjct: 324 KNNILI 329



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 80/201 (39%), Gaps = 14/201 (6%)

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDV 571
           F +        + +SATP    L+     + E  I    P   ++    +    T +  +
Sbjct: 721 FLKSLKYSSHVLAMSATPIPRTLQMSLTGLKELSIIATPPLNRLEVRTSVMPFDTVI--I 778

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLR 629
            D +     +G R    V   +  ED+ + L +    + Y   H ++   +  E++ +  
Sbjct: 779 RDALLREHFRGGRSFYVVPRIKDMEDIEKQLKQIVPELSYKIAHGKMTPSKIDEVMSEFY 838

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GKFD+L+   ++  G+DI E   + I +AD  G  +    L Q  GR  R    K+  Y
Sbjct: 839 AGKFDILISTTIIESGIDITEANTMIIHNADTLGLSQ----LYQLRGRIGR---GKIRGY 891

Query: 690 ADTITKSIQLAIDETTRRREK 710
           A     S +  +  + RR E 
Sbjct: 892 AYLTVASNKKLMQHSLRRLEI 912


>gi|260903903|ref|ZP_05912225.1| DEAD/DEAH box helicase domain-containing protein [Brevibacterium
           linens BL2]
          Length = 606

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 83/193 (43%), Gaps = 10/193 (5%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++   I++ V TK+  E+L E L  R  +   ++ ++    R   I  LR GK D+LV 
Sbjct: 252 VEEYEGIIMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDILVA 311

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLD+    LV   D           S +  IGR  R   S   IL+     + +
Sbjct: 312 TDVAARGLDVERITLVVNFD-----IPHDTESYVHRIGRTGRAGRSGEAILFVTPREQRL 366

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVK---EKIMEVIDPILLEDAATTNISIDAQQLS 754
             +I+  T+++ +QL+      +    V+   ++I +V+    L + AT     +  + +
Sbjct: 367 LGSIERATKQKVEQLKMPSVEELTNTRVEKFTKRIDDVLATTELTELATVIEQYELSR-N 425

Query: 755 LSKKKGKAHLKSL 767
           +      A L SL
Sbjct: 426 VPATDIAAALASL 438


>gi|294932985|ref|XP_002780540.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239890474|gb|EER12335.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 525

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 77/190 (40%), Gaps = 13/190 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPP-----VEIRSARTQVEDVYDE 574
            T + SAT         +    E+ IR     T L   P     VE+     + +  +D 
Sbjct: 320 QTTMWSATWPKEVQSLARDFCREEPIRLTVGNTQLQANPDVKQRVEVVPEMDKRQMFFDW 379

Query: 575 INLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           I   +     RI++   TK+ A+ LT  +   N     +H + +  ER  I+ D + G+ 
Sbjct: 380 IKETSATLWSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILNDFKTGRC 439

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +VLV  ++ + GLDI     V   D  K   +      I   GRA    NS   +  DT 
Sbjct: 440 NVLVATDVAQRGLDIKNVEWVVNYDMPKT--IEDYVHRIGRTGRAGAVGNSLTFITNDTH 497

Query: 694 T-KSIQLAID 702
           T   +++A D
Sbjct: 498 TPDRVRMAKD 507


>gi|307564503|ref|ZP_07627044.1| transcription-repair coupling factor [Prevotella amnii CRIS 21A-A]
 gi|307346863|gb|EFN92159.1| transcription-repair coupling factor [Prevotella amnii CRIS 21A-A]
          Length = 1178

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 94/238 (39%), Gaps = 14/238 (5%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A+   +K    R K  LL G+T S      A +   +    + +  +   A   Y++
Sbjct: 15  QVKALELFIK--EERHKNILLKGLTASAPAMLFAALAHKVASTFLFVMNDNDEAGYFYND 72

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRM---RHSATRSLLE- 268
            K    H++ +Y  +Y   + P ++  R      +  + N+ +      R SA +S  + 
Sbjct: 73  LKTMLSHSS-QYDSAYEVLFFPSSF--RRAIKFGQRDAANQILRTEVLTRLSAAKSSNDT 129

Query: 269 ---RNDCIVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
              +    +V+  S I  +  S +      + L +G  +   ++  +L +  +K      
Sbjct: 130 SHPKAPLFIVTEPSAISELVISQQQLDSKRLTLSVGKHINITKVGKTLREFGFKEVLYVY 189

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
             G F + G  I+++ S   +  +R+  FG+DI+ I  F   +   I    +I I   
Sbjct: 190 EPGEFAIRGSIIDVY-SFSGETPYRIDFFGDDIDTIRTFEIESQLSIDKKTSIDIVPE 246



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 12/190 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ ++ATP    L+       +  I  T   +  P++        E + + IN    +  
Sbjct: 760 TLTMTATPIPRTLQFSLMGARDMSIMKTPPPNRYPIQTEIIEFDPETIAEAINFEMSRNG 819

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +DL   +  +    R    H ++K  E  EII       +D+L+   +
Sbjct: 820 QVFFVNDRIGKLQDLAAMIRRKVPDCRIAIGHGQMKPEELEEIIIGFMNYDYDLLLSTTI 879

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I DA   G     + L Q  GR  R+ N K   Y   IT  +  A+
Sbjct: 880 VENGIDISNANTIIINDAHHFGL----SDLHQMRGRVGRS-NKKAFCYL--ITPPM--AL 930

Query: 702 DETTRRREKQ 711
             T  RR  +
Sbjct: 931 LNTEARRRIE 940


>gi|124506471|ref|XP_001351833.1| RNA helicase-1 [Plasmodium falciparum 3D7]
 gi|23504859|emb|CAD51640.1| RNA helicase-1 [Plasmodium falciparum 3D7]
          Length = 665

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 97/235 (41%), Gaps = 22/235 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +++  +T+ Q   +   +  R   L + GF      +      + ++  R  T++ SAT
Sbjct: 363 MLNKKRMTLEQCRYLCFDEADR---LIDLGFE-----EEVRNTLDHFSNQR-QTLLFSAT 413

Query: 532 PGSWELEQCQGIIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                 E  +  +V  II   G      +D   E+   + + + +   + +  + G  +L
Sbjct: 414 MPKKIQEFAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEEFK-LSYLLEVLQKTGPPVL 472

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +    K+  +D+ EYL  + +    +H  +   ER E I   R GK D+LVG ++  +GL
Sbjct: 473 IFCENKKDVDDVHEYLLLKGVNAVAIHGNLGQSERQEAINLFREGKKDILVGTDVASKGL 532

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           D P    V   D  K+       + +  IGR  R   + +      I K+ + AI
Sbjct: 533 DFPSIEHVINYDMPKD-----IENYVHRIGRTGRCGKTGIATTF--INKNQEEAI 580


>gi|50303057|ref|XP_451466.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660682|sp|Q6CX73|FAL1_KLULA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49640597|emb|CAH03054.1| KLLA0A10659p [Kluyveromyces lactis]
          Length = 398

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 89/210 (42%), Gaps = 23/210 (10%)

Query: 515 FEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSA 564
           ++ +  L P    +VVSAT     LE  +  + + +        I    +    V++   
Sbjct: 189 YDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKE 248

Query: 565 RTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
             + +   D+YD + +      + ++   T++  + L+  L + N  V  MH ++K  ER
Sbjct: 249 EWKFDTLCDLYDSLTIT-----QCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEER 303

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            +++ D R GK  VL+  ++   G+D+ +  LV   D        +  + I  IGR+ R 
Sbjct: 304 DQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYD-----IPDNLENYIHRIGRSGRF 358

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQ 711
               V +   T  +  +L   E+  R + +
Sbjct: 359 GRKGVAINFITKEERPKLKEIESHYRIKIK 388


>gi|226292592|gb|EEH48012.1| ATP-dependent RNA helicase DED1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 687

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 13/189 (6%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV---DPPVEIR----SARTQVEDV 571
           +     T++ SAT      +  +  + + I    G V      +  R     +    +  
Sbjct: 387 DKHLRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRVIECDSDKDKDSA 446

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             +I  +   GL  L+ V TKR A+ L+++L +  +    +H +    ER   +   R G
Sbjct: 447 LLDILCSDSTGL-TLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTG 505

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV   +   GLDIP    V   D   E         +  IGR  R  N+ +     
Sbjct: 506 RCPILVATAVAARGLDIPNVTHVINYDLPNE-----IDDYVHRIGRTGRAGNTGLSTAFF 560

Query: 692 TITKSIQLA 700
           +  K+ ++A
Sbjct: 561 SRIKNFKIA 569


>gi|225680888|gb|EEH19172.1| ATP-dependent RNA helicase ded1 [Paracoccidioides brasiliensis
           Pb03]
          Length = 686

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 13/189 (6%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV---DPPVEIR----SARTQVEDV 571
           +     T++ SAT      +  +  + + I    G V      +  R     +    +  
Sbjct: 387 DKHLRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRVIECDSDKDKDSA 446

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             +I  +   GL  L+ V TKR A+ L+++L +  +    +H +    ER   +   R G
Sbjct: 447 LLDILCSDSTGL-TLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTG 505

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV   +   GLDIP    V   D   E         +  IGR  R  N+ +     
Sbjct: 506 RCPILVATAVAARGLDIPNVTHVINYDLPNE-----IDDYVHRIGRTGRAGNTGLSTAFF 560

Query: 692 TITKSIQLA 700
           +  K+ ++A
Sbjct: 561 SRIKNFKIA 569


>gi|154684961|ref|YP_001420122.1| YdbR [Bacillus amyloliquefaciens FZB42]
 gi|154350812|gb|ABS72891.1| YdbR [Bacillus amyloliquefaciens FZB42]
          Length = 511

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 21/202 (10%)

Query: 523 PTTIVVSAT-PGSW---------ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             T++ SAT P            E E  +    E  +         V+ R     +  + 
Sbjct: 194 HQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLL 253

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D      Q     ++   TKR  ++L E L  R      +H ++   +R+  +R  + G 
Sbjct: 254 D-----IQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGA 308

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            +VLV  ++   GLDI     V   D       +   S +  IGR  R   +   + +  
Sbjct: 309 IEVLVATDVAARGLDISGVTHVYNFDV-----PQDPESYVHRIGRTGRAGKTGMAMTFIT 363

Query: 692 TITKSIQLAIDETTRRREKQLE 713
              KS+  AI++TT+R+  +++
Sbjct: 364 PREKSMLRAIEQTTKRKMDRMK 385


>gi|123325507|gb|ABM74410.1| vasa protein [Botrylloides violaceus]
          Length = 630

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 74/194 (38%), Gaps = 17/194 (8%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQVE 569
           +     T++ SAT      +     + E  +  T          +    V+I     + +
Sbjct: 384 DKNTRHTLMFSATFPDEIQKLAHEFLREDFLFLTVRRVGGACSDVTQSMVQI-DQDDKRD 442

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + + +   A+   R L+ V TKR A+ L  +L +  +    +H + +  ER   + D +
Sbjct: 443 KLMELLADVAETAARTLVFVDTKRNADFLATFLSQEGLPTTSIHGDRQQRERETALLDFK 502

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI-- 687
            G+  +L+  ++   GLDIP+   V   D             +  IGR  R  N      
Sbjct: 503 NGRCPILIATSVAARGLDIPKVEHVINYD-----LPSDIDEYVHRIGRTGRCGNLGSATS 557

Query: 688 LYADTITKSIQLAI 701
            Y+D    ++  ++
Sbjct: 558 FYSDDKDNALARSL 571


>gi|145476289|ref|XP_001424167.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391230|emb|CAK56769.1| unnamed protein product [Paramecium tetraurelia]
          Length = 475

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 17/171 (9%)

Query: 524 TTIVVSATPGSWELEQ------CQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDE 574
            T+  SAT    E+++       Q  I  Q+      V+  +    I +   + E + + 
Sbjct: 273 QTLFFSAT-WPQEVQRLANSLCSQDPIFLQLGERGLSVNKNITQSVIIAGGNKFEQLIEY 331

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            N    +  ++L+    K   + L   L +  +  RY+H ++K  +R  I++D R GK +
Sbjct: 332 FNQIKDK--KVLVFCQKKIDTQKLEYRLSQHGVNARYLHGDLKQNQRDYIMQDFRNGKVN 389

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            L+  NL   GLD+ +  +V   D     F  +    I  IGR  R     
Sbjct: 390 CLITTNLASRGLDVSDVDVVINYD-----FPENIEDYIHRIGRTGRAGKKG 435


>gi|71987143|ref|NP_001022623.1| INitiation Factor family member (inf-1) [Caenorhabditis elegans]
 gi|124217|sp|P27639|IF4A_CAEEL RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Initiation factor 1
 gi|6700|emb|CAA78102.1| unnamed protein product [Caenorhabditis elegans]
 gi|532818|gb|AAA21170.1| Initiation factor protein 1, isoform a, confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 402

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 83/208 (39%), Gaps = 17/208 (8%)

Query: 515 FEEWNCLRP--TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQVE 569
           +E +  +      +++SAT  S  L+     +   +  +++   L    +       Q +
Sbjct: 193 YEVFRSMPQDVQVVLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKD 252

Query: 570 ----DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
               D   ++        + ++   T+R  + LTE + E    V  +H ++   ER  I+
Sbjct: 253 EWKFDCLCDLYNVVNV-TQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIM 311

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           R+ R G   VL+  ++L  G+D+ +  LV   D        ++ + I  IGR+ R     
Sbjct: 312 REFRSGSSRVLITTDILARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKG 366

Query: 686 VILYADTITKSIQLAIDETTRRREKQLE 713
           V +   T   + Q  + E       Q+E
Sbjct: 367 VAINFVTENDARQ--LKEIESYYTTQIE 392


>gi|308172326|ref|YP_003919031.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605190|emb|CBI41561.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens DSM 7]
          Length = 511

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 21/202 (10%)

Query: 523 PTTIVVSAT-PGSW---------ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             T++ SAT P            E E  +    E  +         V+ R     +  + 
Sbjct: 194 HQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLL 253

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D      Q     ++   TKR  ++L E L  R      +H ++   +R+  +R  + G 
Sbjct: 254 D-----IQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGA 308

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            +VLV  ++   GLDI     V   D       +   S +  IGR  R   +   + +  
Sbjct: 309 IEVLVATDVAARGLDISGVTHVYNFDV-----PQDPESYVHRIGRTGRAGKTGMAMTFIT 363

Query: 692 TITKSIQLAIDETTRRREKQLE 713
              KS+  AI++TT+R+  +++
Sbjct: 364 PREKSMLRAIEQTTKRKMDRMK 385


>gi|148652953|ref|YP_001280046.1| DEAD/DEAH box helicase domain-containing protein [Psychrobacter sp.
           PRwf-1]
 gi|148572037|gb|ABQ94096.1| DEAD/DEAH box helicase domain protein [Psychrobacter sp. PRwf-1]
          Length = 516

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 81/215 (37%), Gaps = 22/215 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---ED------VYDE 574
            TI+ SAT      +   G I          +D   E +     V   +D      + D 
Sbjct: 219 QTIMCSAT-----WDGPVGKIAASFTNNPERIDIKAETKHIDESVYYADDFNHKNRILDN 273

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +          ++   TKR  E L + L E+  +  ++H ++   +R  II D++ GK  
Sbjct: 274 LLTQKDVNQ-AIIFAATKRSCETLAKSLKEQGHKASFLHGDLPQAKRSRIINDVKAGKIT 332

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   G+D+     V   D       R     +  IGR+ R   + + +   +I 
Sbjct: 333 ILVATDVAARGIDVSGITHVFNYD-----LPRQTEDYVHRIGRSGRAGRTGIAINICSID 387

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
              Q  +D   R  ++ +   +   + P+   + +
Sbjct: 388 DRAQ--LDAINRYLKRTMSVEEIEGMEPKKNTKDM 420


>gi|157278092|ref|NP_001098146.1| VASA [Oryzias latipes]
 gi|14522857|dbj|BAB61047.1| VASA [Oryzias latipes]
          Length = 617

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 11/131 (8%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q+ D+   I        R ++ V TKR A+ +  +L +  +    +H + +  ER + + 
Sbjct: 423 QLLDLLRTIG-----SERTMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKALA 477

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK- 685
           D R GK  VLV  ++   GLDIP+   V   D        +    +  IGR  R  N+  
Sbjct: 478 DFRSGKCPVLVATSVASRGLDIPDVQHVVNFD-----LPNTIDDYVHRIGRTGRCGNTGR 532

Query: 686 VILYADTITKS 696
            + + D    S
Sbjct: 533 AVSFYDPDVDS 543


>gi|317127486|ref|YP_004093768.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315472434|gb|ADU29037.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 500

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 108/263 (41%), Gaps = 39/263 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII----RPTGLVDPPVEIR----SARTQVEDVYDEI 575
            T++ SAT    +L+      + + +    +   L    +E R    S + + + + + +
Sbjct: 177 QTLLFSAT-MPPKLKTIADRFMNKPVSIAVKAKQLTVENIEQRYIALSEKEKFDTLCNLL 235

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++  +     ++   TKR  ++LTE L  R   V  +H ++K   R ++IR  + G  DV
Sbjct: 236 DM--ETPELAIIFGRTKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDV 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTIT 694
           +V  ++   GLD+ +   V   D       +   S +  IGR  R     +   +     
Sbjct: 294 MVATDVAARGLDVNDVSHVINFD-----LPQDSESYVHRIGRTGRAGKKGISYSFVTHKE 348

Query: 695 KSIQLAIDETTRR----------------REKQLEHNKKHNINPQSVK------EKIMEV 732
           K     I+E+TR+                R KQ  +  K  +N  + K      ++++E 
Sbjct: 349 KDHLRYIEESTRQKMKQVDAPTLADAMRGRHKQAVNELKKAVNNAASKQLTGEAKQLLEE 408

Query: 733 IDPILLEDAATTNISIDAQQLSL 755
            DP++L  AA   ++ +  +  +
Sbjct: 409 FDPVVLVSAALQMVTKEPSKKQV 431


>gi|325067248|ref|ZP_08125921.1| transcription-repair coupling factor [Actinomyces oris K20]
          Length = 173

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 12/181 (6%)

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV 275
           + P + V    ++ +    E   PR DT  ++ S     + R+ H      +      V 
Sbjct: 1   YLPADDVAVMPAW-ETLPHERLSPRADTVAQRLSV----LRRLAHPEEGGAIRVLIVPVR 55

Query: 276 SSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
           + ++  I G+G +E       QL  G +V  +E    L    Y R D+   RG + V G 
Sbjct: 56  ALLAPVIAGLGELEPV-----QLAPGLTVGLEETARRLEAAAYTRVDMVESRGEYAVRGG 110

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
            +++FP   E    RV  FG++I+E+S F     + I  +  +   A    V        
Sbjct: 111 ILDVFPP-SEPRPVRVDFFGDEIDEVSSFAVADQRTIETLGAVTATACRELVLTDAVRER 169

Query: 395 A 395
           A
Sbjct: 170 A 170


>gi|291276231|gb|ADD91316.1| vasa [Seriola quinqueradiata]
          Length = 650

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 22/186 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRP---------TGLVDPPVEI--RSARTQVED 570
           +  T++ SAT            +    +           + +    +E+   S R Q+ D
Sbjct: 401 KRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQKFIEVTKFSKREQLLD 460

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +            R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R 
Sbjct: 461 ILKTTGT-----ERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRS 515

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G+  VLV  ++   GLDIP+   V   D        +    +  IGR  R  N+   + +
Sbjct: 516 GRCPVLVATSVAARGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNTGRAVSF 570

Query: 690 ADTITK 695
            D    
Sbjct: 571 YDPDND 576


>gi|225463593|ref|XP_002271370.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 543

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 94/260 (36%), Gaps = 28/260 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      D+    F+ +   R  T++ SAT  +      +  +V+ +    G  
Sbjct: 265 RLVDLGFE-----DDIREVFDHFKAQR-QTLLFSATMPTKIQNFARSALVKPVTVNVGRA 318

Query: 555 ----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + Q   +   +    +    +L+    K   +D+ EYL  + +   
Sbjct: 319 GAANLDVIQEVEYVK-QEAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAV 377

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER   I   + GK DVLV  ++  +GLD P+   V   D   E       +
Sbjct: 378 AIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIKHVINYDMPAE-----IEN 432

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
            +  IGR  R   + +        +S    +D       K L    K  I P      + 
Sbjct: 433 YVHRIGRTGRCGKTGIATTFINKNQSETTLLD------LKHLLQEAKQRIPPV-----LA 481

Query: 731 EVIDPILLEDAATTNISIDA 750
           E+ DP+   DA T    +  
Sbjct: 482 ELNDPMEDVDAITDASGVKG 501


>gi|188580552|ref|YP_001923997.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
 gi|179344050|gb|ACB79462.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 1085

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 77/210 (36%), Gaps = 12/210 (5%)

Query: 182 TFTMAKV-IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
              +A +      RP I +A +      + +  +   P   V  +  + D    +   P 
Sbjct: 6   ALAIALLGFAQTARPLIHVARDGRRLEDVAAVLRALAPERTVAVYPEW-DCLPFDRASPS 64

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
                 +   +    D            R D ++ ++ + +  +   E++    V+L++G
Sbjct: 65  RGVMGARTGVLRWLTDEQA---------RPDIVLTTAPALLQRVPPPETWDAAHVELRVG 115

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           ++++ + L + L +  Y   D     G   V G +I++FP+    +  RV   G  I  I
Sbjct: 116 EALDPERLTAELGRLGYILDDRVDEPGEVAVRGRTIDVFPA-AAPLPCRVEHDGTRITAI 174

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
             + P++ +     + + I   +  +    
Sbjct: 175 RSYDPVSQRSRVETDRLVIDPATEIILASD 204



 Score = 46.2 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 3/146 (2%)

Query: 524 TTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             + +SATP    L+    G+    +I     V  P+    A  +   +   +    ++G
Sbjct: 699 HILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQPIRTVIAPFEEATLAAALRREHRRG 758

Query: 583 LRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            +  +          + + L      + V   H E+K  E  + +     G  DVL+  +
Sbjct: 759 GQSFVVCPRIEDIAPMAKRLRSLVPGLAVVIAHGEMKPAEMDDAMVRFADGDGDVLLATS 818

Query: 641 LLREGLDIPECGLVAILDADKEGFLR 666
           ++  GLD+P    + + DA++ G  +
Sbjct: 819 IIESGLDVPRANTMLVWDAERFGLAQ 844


>gi|328552138|gb|AEB22630.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens TA208]
          Length = 494

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 21/202 (10%)

Query: 523 PTTIVVSAT-PGSW---------ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             T++ SAT P            E E  +    E  +         V+ R     +  + 
Sbjct: 177 HQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLL 236

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D      Q     ++   TKR  ++L E L  R      +H ++   +R+  +R  + G 
Sbjct: 237 D-----IQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGA 291

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            +VLV  ++   GLDI     V   D       +   S +  IGR  R   +   + +  
Sbjct: 292 IEVLVATDVAARGLDISGVTHVYNFDV-----PQDPESYVHRIGRTGRAGKTGMAMTFIT 346

Query: 692 TITKSIQLAIDETTRRREKQLE 713
              KS+  AI++TT+R+  +++
Sbjct: 347 PREKSMLRAIEQTTKRKMDRMK 368


>gi|167860961|gb|ACA05234.1| vasa-like protein [Apostichopus japonicus]
          Length = 530

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 95/262 (36%), Gaps = 31/262 (11%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD--NRPLRFEEWNCLRPTTIVVS 529
           F++   +++ ++  +   +  R     + GF  P      N P   ++       T++ S
Sbjct: 211 FINSGMISVEKVKYLVLDEADRM---LDMGFG-PDMEKLVNNPAMPKKGER---HTLMFS 263

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLV--------DPPVEIRSARTQVEDVYDEINLAAQQ 581
           AT  +   E+    +   +    G V           VE+     + + + + +    + 
Sbjct: 264 ATFPNEVQERAAEYLDNYLFLTVGRVGGANSDVRQVVVEV-PQAAKKDKLIEILQSQPEN 322

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R L+   TKR A+ L  YL +       +H + +  ER E + D +  +  VLV  ++
Sbjct: 323 D-RTLVFTETKRGADFLASYLSQSGFPTTSIHGDREQREREEALNDFKRNRASVLVATSV 381

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
              GLDIP    V   D   E         +  IGR  R  N+ +        K      
Sbjct: 382 ASRGLDIPAVKHVVNFDLPSE-----IDDYVHRIGRTGRCGNTGLSTSFYNPEK------ 430

Query: 702 DETTRRREKQLEHNKKHNINPQ 723
           D T  R   ++  +  H   P+
Sbjct: 431 DATISRALIKILAD-AHQDVPE 451


>gi|319411502|emb|CBQ73546.1| related to DRS1-RNA helicase of the DEAD box family [Sporisorium
           reilianum]
          Length = 932

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 15/194 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++ V +K++A  L        +    +H ++   +RI+ + D R GK D L+  +L  
Sbjct: 611 QVIIFVRSKKLAHQLKIVFGLLGLSAGELHGDLSQEQRIDALTDFRDGKVDFLLATDLAS 670

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLDI     V   D    G   +    +    RA RN  + V L  +   + ++LAI  
Sbjct: 671 RGLDIKGVQTVINYDMP--GQFEAYLHRVGRTARAGRNGRA-VTLVGEADRRMLKLAI-- 725

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
                +K      KH I P +V  K++E ++ +  E  A      + + L +++ + K  
Sbjct: 726 -----KKSSAEQIKHRIIPAAVASKMLETLEQLKPEVDAVLREEKEEKALRIAEMELKKG 780

Query: 764 LKSLRKQMHLAADN 777
                + M   AD 
Sbjct: 781 -----ENMAAHADE 789


>gi|289644104|ref|ZP_06476199.1| Helicase subunit of the DNA excision repair complex-like protein
           [Frankia symbiont of Datisca glomerata]
 gi|289506073|gb|EFD27077.1| Helicase subunit of the DNA excision repair complex-like protein
           [Frankia symbiont of Datisca glomerata]
          Length = 87

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/75 (52%), Positives = 53/75 (70%)

Query: 129 WSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV 188
              NN ++    FQ+ +D+ PSGDQPAAIA+L + I + EK  +LLG TG+GK+ T A +
Sbjct: 13  RPANNITRSTAPFQVVSDFEPSGDQPAAIAELARRIRAGEKDLVLLGATGTGKSATTAWL 72

Query: 189 IEAMQRPAIVMAPNK 203
           IE +QRP +VMAPNK
Sbjct: 73  IEQVQRPTLVMAPNK 87


>gi|195061826|ref|XP_001996076.1| GH14289 [Drosophila grimshawi]
 gi|193891868|gb|EDV90734.1| GH14289 [Drosophila grimshawi]
          Length = 746

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 13/164 (7%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++                 +++ +  +I   ++   +I++ V TKR  +
Sbjct: 510 LELSANHNIRQVVDVCDEFSKE-------DKLKSLLSDIYDTSENPGKIIIFVETKRRVD 562

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L  ++    +R   +H +    ER  ++R+ R GK ++LV  ++   GLD+     V  
Sbjct: 563 NLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVIN 622

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            D     + ++    I  IGR  R+ N+K   +A     + + A
Sbjct: 623 FD-----YPQNSEDYIHRIGRTGRS-NTKGTSFAFFTKNNAKQA 660


>gi|254560353|ref|YP_003067448.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens DM4]
 gi|254267631|emb|CAX23477.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           DM4]
          Length = 1111

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 103/308 (33%), Gaps = 43/308 (13%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV-IEAMQRPAIVMAPNKILA 206
            P  DQ A          S +     L  TG      +A +      RP I +A +    
Sbjct: 8   KPRDDQDA----------SPDGSVAPLVPTG---ALAVALLGFAQAARPLIHVARDGRRL 54

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266
            ++ +      P   V  +             P  D      +S +  +   R    R L
Sbjct: 55  DEIAAVLLALAPERTVAVY-------------PEWDCLPFDRASPSRGVMGARTGVLRWL 101

Query: 267 LERN---DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
            +     D ++ ++ + +  +   E++    ++L++G+ ++ ++L + L +  Y   D  
Sbjct: 102 TDDRAQPDIVLTTAPALLQRVPPPETWESAHIELRVGEPLDAEQLTAQLARLGYILDDRV 161

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G   V G +I++FP+    +  RV   G  I  I  + P++ +     E + I   +
Sbjct: 162 DEPGEVAVRGRTIDVFPA-AAPLPCRVEHDGARITAIRSYDPVSQRSRVETERLVIDPAT 220

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELE----KEGRLLEAQRL------EQRITYDLEML 433
             +    +      +  +E   RL             +   RL      E+R     E +
Sbjct: 221 EIILDPDSGLALEPFTGQE--HRLARFYPALVTMLDYVPEARLVVEAGVEERAAAFFEQI 278

Query: 434 ETTGSCQS 441
                 + 
Sbjct: 279 AEGREAEG 286



 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 58/146 (39%), Gaps = 3/146 (2%)

Query: 524 TTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             + +SATP    L+    G+    +I     V  P+    A  +   +   +    ++G
Sbjct: 725 HILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQPIRTVIAPFEESTLAAALRREHRRG 784

Query: 583 LRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            +  +          + + L+     + V   H E+K  E  + +     G  DVL+  +
Sbjct: 785 GQSFVVCPRIEDIAPMAKRLHALVPGLDVVTAHGEMKPAEMDDAMVRFADGNGDVLLATS 844

Query: 641 LLREGLDIPECGLVAILDADKEGFLR 666
           ++  GLD+P    + + DA++ G  +
Sbjct: 845 IIESGLDVPRANTMLVWDAERFGLAQ 870


>gi|146184027|ref|XP_001027635.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|146143373|gb|EAS07393.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 713

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 98/274 (35%), Gaps = 40/274 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM-------D 509
            P  L +++  ++         T+ +++ +   +  R     + GF +           D
Sbjct: 231 TPGRLIDFLESETT--------TLRRVTYLVLDEADRM---LDMGFEIQIRKILGQIRPD 279

Query: 510 NRPLRFEEWNCLRPTTI---VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
            + L F          +       TP   ++ + +  I E+I          V +     
Sbjct: 280 RQTLMFSATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERI-------KQIVYVTDQSK 332

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           ++  +  +++   Q+  ++L+   TK+  E ++  L +   +   +H +    +R  ++ 
Sbjct: 333 KINQLIKQLDCLTQKD-KVLIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMN 391

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             + G+  +L+  ++   GLD+ +   V   D     F +     +  IGR  R      
Sbjct: 392 KFKSGECRILIATDVASRGLDVKDVSHVFNYD-----FPKVMEDYVHRIGRTGRAGAYGC 446

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
            +   T     +++      R   Q+ H+ K  I
Sbjct: 447 AVSFLTFEDDKKIS------REYVQMLHDAKQEI 474


>gi|218529447|ref|YP_002420263.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218521750|gb|ACK82335.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 1111

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 103/308 (33%), Gaps = 43/308 (13%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV-IEAMQRPAIVMAPNKILA 206
            P  DQ A          S +     L  TG      +A +      RP I +A +    
Sbjct: 8   KPRDDQDA----------SPDGSVAPLVPTG---ALAVALLGFAQAARPLIHVARDGRRL 54

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266
            ++ +      P   V  +             P  D      +S +  +   R    R L
Sbjct: 55  DEIAAVLLALAPERTVAVY-------------PEWDCLPFDRASPSRGVMGARTGVLRWL 101

Query: 267 LERN---DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
            +     D ++ ++ + +  +   E++    ++L++G+ ++ ++L + L +  Y   D  
Sbjct: 102 TDDRAQPDIVLTTAPALLQRVPPPETWESAHIELRVGEPLDAEQLTAQLARLGYILDDRV 161

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G   V G +I++FP+    +  RV   G  I  I  + P++ +     E + I   +
Sbjct: 162 DEPGEVAVRGRTIDVFPA-AAPLPCRVEHDGARITAIRSYDPVSQRSRVETERLVIDPAT 220

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELE----KEGRLLEAQRL------EQRITYDLEML 433
             +    +      +  +E   RL             +   RL      E+R     E +
Sbjct: 221 EIILDPDSGLALEPFTGQE--HRLARFYPALVTMLDYVPEARLVVEAGVEERAAAFFEQI 278

Query: 434 ETTGSCQS 441
                 + 
Sbjct: 279 AEGREAEG 286



 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 58/146 (39%), Gaps = 3/146 (2%)

Query: 524 TTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             + +SATP    L+    G+    +I     V  P+    A  +   +   +    ++G
Sbjct: 725 HILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQPIRTVIAPFEESTLAAALRREHRRG 784

Query: 583 LRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            +  +          + + L+     + V   H E+K  E  + +     G  DVL+  +
Sbjct: 785 GQSFVVCPRIEDIAPMAKRLHALVPGLDVVTAHGEMKPAEMDDAMVRFADGNGDVLLATS 844

Query: 641 LLREGLDIPECGLVAILDADKEGFLR 666
           ++  GLD+P    + + DA++ G  +
Sbjct: 845 IIESGLDVPRANTMLVWDAERFGLAQ 870


>gi|163850727|ref|YP_001638770.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163662332|gb|ABY29699.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
          Length = 1111

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 103/308 (33%), Gaps = 43/308 (13%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKV-IEAMQRPAIVMAPNKILA 206
            P  DQ A          S +     L  TG      +A +      RP I +A +    
Sbjct: 8   KPRDDQDA----------SPDGSVAPLVPTG---ALAVALLGFAQAARPLIHVARDGRRL 54

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266
            ++ +      P   V  +             P  D      +S +  +   R    R L
Sbjct: 55  DEIAAVLLALAPERTVAVY-------------PEWDCLPFDRASPSRGVMGARTGVLRWL 101

Query: 267 LERN---DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIG 323
            +     D ++ ++ + +  +   E++    ++L++G+ ++ ++L + L +  Y   D  
Sbjct: 102 TDDRAQPDIVLTTAPALLQRVPPPETWESAHIELRVGEPLDAEQLTAQLARLGYILDDRV 161

Query: 324 IIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
              G   V G +I++FP+    +  RV   G  I  I  + P++ +     E + I   +
Sbjct: 162 DEPGEVAVRGRTIDVFPA-AAPLPCRVEHDGARITAIRSYDPVSQRSRVETERLVIDPAT 220

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELE----KEGRLLEAQRL------EQRITYDLEML 433
             +    +      +  +E   RL             +   RL      E+R     E +
Sbjct: 221 EIILDPDSGLALEPFTGQE--HRLARFYPALVTMLDYVPEARLVVEAGVEERAAAFFEQI 278

Query: 434 ETTGSCQS 441
                 + 
Sbjct: 279 AEGREAEG 286



 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 58/146 (39%), Gaps = 3/146 (2%)

Query: 524 TTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             + +SATP    L+    G+    +I     V  P+    A  +   +   +    ++G
Sbjct: 725 HILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQPIRTVIAPFEESTLAAALRREHRRG 784

Query: 583 LRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            +  +          + + L+     + V   H E+K  E  + +     G  DVL+  +
Sbjct: 785 GQSFVVCPRIEDIAPMAKRLHALVPGLDVVTAHGEMKPAEMDDAMVRFADGNGDVLLATS 844

Query: 641 LLREGLDIPECGLVAILDADKEGFLR 666
           ++  GLD+P    + + DA++ G  +
Sbjct: 845 IIESGLDVPRANTMLVWDAERFGLAQ 870


>gi|328910410|gb|AEB62006.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens LL3]
          Length = 480

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 21/202 (10%)

Query: 523 PTTIVVSAT-PGSW---------ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             T++ SAT P            E E  +    E  +         V+ R     +  + 
Sbjct: 163 HQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLL 222

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D      Q     ++   TKR  ++L E L  R      +H ++   +R+  +R  + G 
Sbjct: 223 D-----IQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGA 277

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            +VLV  ++   GLDI     V   D       +   S +  IGR  R   +   + +  
Sbjct: 278 IEVLVATDVAARGLDISGVTHVYNFDV-----PQDPESYVHRIGRTGRAGKTGMAMTFIT 332

Query: 692 TITKSIQLAIDETTRRREKQLE 713
              KS+  AI++TT+R+  +++
Sbjct: 333 PREKSMLRAIEQTTKRKMDRMK 354


>gi|66820759|ref|XP_643949.1| hypothetical protein DDB_G0274325 [Dictyostelium discoideum AX4]
 gi|74927179|sp|Q86IZ9|DDX52_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx52; AltName:
           Full=DEAD box protein 52
 gi|60472102|gb|EAL70055.1| hypothetical protein DDB_G0274325 [Dictyostelium discoideum AX4]
          Length = 668

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 68/197 (34%), Gaps = 21/197 (10%)

Query: 506 SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC------QGIIVEQIIRPTGLVDPPV 559
           +   N  L+   ++      +         EL         + II EQ      +    +
Sbjct: 368 TACQNPKLKICLFSATMNQQV--------EELGHSIMKNPIKIIIGEQNAAAITVDQKLI 419

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +     ++  V   I    +    IL+   +K  A DL + L    I V  +HSE    
Sbjct: 420 YVGKEEGKLLAVRQLIQKGLEPP--ILIFTQSKERAHDLFQELIFDGINVDVIHSERTQF 477

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R  I++  R+GK  VL+   L+  G+D      V   D     F  +  S I  IGR  
Sbjct: 478 QRDTIVKKFRMGKIWVLICTELMARGMDFKGVNFVINFD-----FPHTLASYIHRIGRTG 532

Query: 680 RNVNSKVILYADTITKS 696
           R     V     T   +
Sbjct: 533 RAGRPGVAYTLYTDADT 549


>gi|295116273|emb|CBL37120.1| hypothetical protein [butyrate-producing bacterium SM4/1]
          Length = 185

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 72/184 (39%), Gaps = 17/184 (9%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
             ++ + +   +    + G   S K   +++   +++   +++  +   A ++Y +++ F
Sbjct: 17  FQEMNRDLEQGKGPLQVSGCVDSQKVHLISETAGSLRWK-LIVTYDDSRAREIYEDYRTF 75

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
            P  AV  +             P  D            + R R    + L+E     +V+
Sbjct: 76  DP--AVFLY-------------PAKDLLFYSSDIHGNLLTRQRMQVFKHLMEDEAGTIVT 120

Query: 277 SVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
           +V  +   +  +       + +  G+S++ +E+  +L  Q Y+R       G F V G  
Sbjct: 121 TVDGLMDRLLPLSEIRNSRIAVVSGESLKTEEMKEALAGQGYERVGQVDGMGQFSVRGGI 180

Query: 336 IEIF 339
           I+IF
Sbjct: 181 IDIF 184


>gi|157691224|ref|YP_001485686.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
 gi|157679982|gb|ABV61126.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
          Length = 513

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 96/261 (36%), Gaps = 24/261 (9%)

Query: 523 PTTIVVSAT-PGSW---------ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             T++ SAT P              E  +    E  +         +  R     +  + 
Sbjct: 194 HQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLDIHERKKFDTLTRLL 253

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D      Q     ++   TKR  ++LTE L  R      +H ++   +R+  +R  + G 
Sbjct: 254 D-----IQSPELSIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGS 308

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            DVLV  ++   GLDI     V   D  ++    S    I   GRA R      + +   
Sbjct: 309 IDVLVATDVAARGLDISGVTHVYNFDVPQD--PESYVHRIGRTGRAGRTG--MAMTFITP 364

Query: 693 ITKSIQLAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
             K +  AI++TT+R+  +++    ++      Q   +++  +I    L    T    + 
Sbjct: 365 REKDMLRAIEQTTKRKMDRMKEPTLDEAIEGQQQVTVDRLRTIISENNLNFYMTAAAELL 424

Query: 750 AQQLSLSKKKGKAHLKSLRKQ 770
               S++     A +K + K+
Sbjct: 425 EDHDSVTV--VAAAIKMMTKE 443


>gi|281207287|gb|EFA81470.1| DEAD/DEAH box helicase [Polysphondylium pallidum PN500]
          Length = 922

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 95/236 (40%), Gaps = 37/236 (15%)

Query: 496 TLAEYGFR--LPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQIIRPT 552
            L + GF   +   MDN   +          T++ SAT P     ++ Q      ++RP 
Sbjct: 374 RLIDLGFEEEIRGVMDNFTAQ--------RQTLLFSATMP-----KKIQNFARSALVRPV 420

Query: 553 GL---------VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
            +         +D   E+   + Q   +   +    +    +L+    K+  +D+ EYL 
Sbjct: 421 EVNVGRAGAANLDVIQEVEYVK-QEAKIVYLLECLQKTPPPVLIFCENKKDVDDIYEYLL 479

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            + +    +H +    ER   I+  + GK DVL+  ++  +GLD P+   V   D  KE 
Sbjct: 480 LKQVEAVSLHGDKTQEERDIAIKMFKEGKKDVLIATDVASKGLDFPDIQHVINFDMPKE- 538

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ--LEHNKK 717
                 + I  IGR  R V   +I Y   +    +  I E ++R ++Q    + ++
Sbjct: 539 ----IENYIHRIGRTGRCV--CIICYTMRMIP--REHIQEDSKRHQQQQFEAYQEE 586


>gi|308487516|ref|XP_003105953.1| CRE-INF-1 protein [Caenorhabditis remanei]
 gi|308254527|gb|EFO98479.1| CRE-INF-1 protein [Caenorhabditis remanei]
          Length = 402

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 83/208 (39%), Gaps = 17/208 (8%)

Query: 515 FEEWNCLRP--TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQVE 569
           ++ +  +      +++SAT  S  L+     +   +  +++   L    +       Q +
Sbjct: 193 YDVFRSMPQDVQVVLLSATMPSEVLDVTDRFMRNPIRILVKKDELTLEGIRQFYINVQKD 252

Query: 570 ----DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
               D   ++        + ++   T+R  + LTE +  +   V  +H ++   ER  I+
Sbjct: 253 EWKFDCLCDLYNVVNV-TQAVIFCNTRRKVDQLTEQMTNKQFTVSCLHGDMDQAERDTIM 311

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           R+ R G   VL+  ++L  G+D+ +  LV   D        ++ + I  IGR+ R     
Sbjct: 312 REFRSGSSRVLITTDILARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKG 366

Query: 686 VILYADTITKSIQLAIDETTRRREKQLE 713
           V +   T   + Q  + E       Q+E
Sbjct: 367 VAINFVTENDARQ--LKEIETYYTTQIE 392


>gi|313125011|ref|YP_004035275.1| ercc4-like helicase [Halogeometricum borinquense DSM 11551]
 gi|312291376|gb|ADQ65836.1| ERCC4-like helicase [Halogeometricum borinquense DSM 11551]
          Length = 843

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 20/184 (10%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-------H 613
           +    +Q   +  +     Q G R+++   ++  AE LT++L E     R++        
Sbjct: 351 LHPKFSQTRILLAQTLG-IQDGERVIVFTESRDTAEALTDFLSESFDARRFVGQGDKEGS 409

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
             +   E+ E + + R G+F+VLV  ++  EGLD+PE  LV   +      + +    IQ
Sbjct: 410 DGMTQKEQQETLDEFRNGEFEVLVSTSVAEEGLDVPEVDLVLFFEP-----VPTAIRSIQ 464

Query: 674 TIGRAARNVNSKVIL-YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
             GR  R    +VI+  A+         I   +RRREK+++   +   + + V +++ E 
Sbjct: 465 RKGRTGRQAEGRVIVLMAENTRDEAYFWI---SRRREKEMKSELR---DLKGVADEVEEE 518

Query: 733 IDPI 736
           +D  
Sbjct: 519 LDDS 522


>gi|224141279|ref|XP_002324002.1| predicted protein [Populus trichocarpa]
 gi|222867004|gb|EEF04135.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 71/183 (38%), Gaps = 14/183 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           R  T++ +AT      +    ++V  +    G +D  V  +S    VE +         +
Sbjct: 331 RRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNIDELVANKSITQHVELLAPLEKHRRLE 390

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  + + G +I++   TK+M + L   L  R      +H +    ER  ++   R G+ 
Sbjct: 391 QILRSQEPGSKIIIFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDHVLSQFRTGRS 449

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDI +  +V   D     F       +  IGR  R   + V       
Sbjct: 450 PILVATDVAARGLDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGRAGATGVAYTFFGD 504

Query: 694 TKS 696
             +
Sbjct: 505 QDA 507


>gi|317485406|ref|ZP_07944285.1| transcription-repair coupling factor [Bilophila wadsworthia 3_1_6]
 gi|316923365|gb|EFV44572.1| transcription-repair coupling factor [Bilophila wadsworthia 3_1_6]
          Length = 1149

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 73/183 (39%), Gaps = 10/183 (5%)

Query: 240 RTDTYIEKESSINEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGIGSVESYSQMIVQLK 298
            T        S N +    R SA  +L       +++++ + +  +  ++ +    V L 
Sbjct: 80  WTSLPPFSPRSANREGWTERLSALYALRSGQAKGLLLTADNLLPKLVPLDFFENREVTLI 139

Query: 299 IGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIE 358
            G+ V    +L   V+  Y+R  +    G     GD ++I P    D   R+  FG+ IE
Sbjct: 140 RGEDVSLDMILEQAVEWGYERVSMVSNPGEIARRGDILDIMPPGY-DKPIRLDFFGDLIE 198

Query: 359 EISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE 418
           EI  F P++ +   N+  +++   S                + +++ R   L ++  L E
Sbjct: 199 EIRLFDPVSQRSKANLSEVRVLPVSPIRQSPAD--------QAKMQARWKSLFQKNMLTE 250

Query: 419 AQR 421
            +R
Sbjct: 251 NER 253



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 66/186 (35%), Gaps = 15/186 (8%)

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-----VYDEINLAAQQG 582
           ++ATP    L+     + E  +  T     P E +   T + +     +   I     + 
Sbjct: 761 LTATPIPRTLQLSMSGVRELSVIET----APPERKPVSTALLERDKATLRQVIERELARE 816

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       +  E + E++ E     R    H ++   +  E +     G+ D+LV   
Sbjct: 817 GQVFWVHNRVQGLERVVEFVKELAPNARIGMAHGQLPEKKLEETMHAFWHGELDILVCTA 876

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  GLD P    + +  A   G  +    L Q  GR  R+       +  +  + +  A
Sbjct: 877 IVESGLDFPRANTLIVDQAHLFGLGQ----LYQLRGRVGRSDRQAFACFVVSDLERLPAA 932

Query: 701 IDETTR 706
             E  R
Sbjct: 933 TKERLR 938


>gi|240137759|ref|YP_002962231.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           AM1]
 gi|240007728|gb|ACS38954.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           AM1]
          Length = 1080

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 78/206 (37%), Gaps = 12/206 (5%)

Query: 185 MAKV-IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243
           MA +      RP I +A +     ++ +  +   P   V  +  + D    +   P    
Sbjct: 1   MALLGFAQAARPLIHVARDGRRLDEIAAVLRALAPERTVAVYPEW-DCLPFDRASPSRGV 59

Query: 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSV 303
              +   +    D   H          D ++ ++ + +  +   E++    ++L++G+ +
Sbjct: 60  MGARTGVLRWLTDDRAHP---------DIVLTTAPALLQRVPPPETWESAHIELRVGEPL 110

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           + ++L + L +  Y   D     G   V G +I++FP+    +  RV   G  I  I  +
Sbjct: 111 DAEQLTAQLARLGYILDDRVDEPGEVAVRGRTIDVFPA-AAPLPCRVEHDGARITAIRSY 169

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPR 389
            P++ +     E + I   +  +   
Sbjct: 170 DPVSQRSRVETERLVIDPATEIILDP 195



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 3/146 (2%)

Query: 524 TTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             + +SATP    L+    G+    +I     V  P+    A  +   +   +    ++G
Sbjct: 694 HILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQPIRTVIAPFEETTLAAALRREHRRG 753

Query: 583 LRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            +  +          + + L      + V   H E+K  E  + +     G  DVL+  +
Sbjct: 754 GQSFVVCPRIEDIAPMAKRLRALVPGLDVVTAHGEMKPAEMDDAMVRFADGNGDVLLATS 813

Query: 641 LLREGLDIPECGLVAILDADKEGFLR 666
           ++  GLD+P    + + DA++ G  +
Sbjct: 814 IIESGLDVPRANTMLVWDAERFGLAQ 839


>gi|19387221|gb|AAL87141.1|AF479822_1 DEAD box RNA helicase Vasa [Oryzias latipes]
          Length = 396

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 11/131 (8%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q+ D+   I        R ++ V TKR A+ +  +L +  +    +H + +  ER + + 
Sbjct: 202 QLLDLLRTIG-----SERTMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKALA 256

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK- 685
           D R GK  VLV  ++   GLDIP+   V   D        +    +  IGR  R  N+  
Sbjct: 257 DFRSGKCPVLVATSVASRGLDIPDVQHVVNFD-----LPNTIDDYVHRIGRTGRCGNTGR 311

Query: 686 VILYADTITKS 696
            + + D    S
Sbjct: 312 AVSFYDPDVDS 322


>gi|195453112|ref|XP_002073643.1| GK14214 [Drosophila willistoni]
 gi|194169728|gb|EDW84629.1| GK14214 [Drosophila willistoni]
          Length = 745

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 13/164 (7%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++                 +++ +  +I   ++   +I++ V TKR  +
Sbjct: 515 LELSANHNIRQVVEVCDEFSKE-------DKLKSLLSDIYDTSENPGKIIIFVETKRRVD 567

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L  ++    +R   +H +    ER  ++R+ R GK ++LV  ++   GLD+     V  
Sbjct: 568 NLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVIN 627

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            D     + ++    I  IGR  R+ N+K   +A     + + A
Sbjct: 628 FD-----YPQNSEDYIHRIGRTGRS-NTKGTSFAFFTKNNAKQA 665


>gi|225022992|ref|ZP_03712184.1| hypothetical protein CORMATOL_03039 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944215|gb|EEG25424.1| hypothetical protein CORMATOL_03039 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 1223

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 74/209 (35%), Gaps = 19/209 (9%)

Query: 191 AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESS 250
           A   P +V+      A  L +E K     + V +F ++ +    E   P  D    + + 
Sbjct: 44  AHHTPLLVVTATGREAEDLTAELKAM-WGDQVAWFPAW-ETLPHERLSPAADVAGTR-AK 100

Query: 251 INEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
           I   +  +R   T +        ++ +      +            L +G   +  +L  
Sbjct: 101 ILHNLANLRIVVTAA--RGVCQPILETTPGRDPL-----------TLTVGHDYDFTDLTH 147

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            LV + YK  D+   RG F   G  I+IFP+  E    R   +G+++ ++  F     + 
Sbjct: 148 HLVFKAYKHVDLVARRGEFATRGGIIDIFPTTGE-HPIRAEFWGDELTDLRAFSVADQRA 206

Query: 371 IRNVETIK--IYANSHYVTPRPTLNTAMK 397
             +++     +Y     +        A +
Sbjct: 207 FPDLDYPTVDVYPARELLITDNVAGRAAE 235



 Score = 41.2 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 69/204 (33%), Gaps = 23/204 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    LE     I E     + ++ PP +     T V     + +   I    
Sbjct: 787 VLTMSATPIPRTLEMSMAGIREM----STILTPPEDRHPILTYVGAQEEKQIAAAIRREL 842

Query: 580 QQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +  ++          E    +L   + E  I V   H ++        ++     ++DV
Sbjct: 843 LRDGQVFFVHNKVSDIEKKARELRNLVPEARIVVA--HGQMSEEVLERTVQGFWDREYDV 900

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  GLDI     + + +A   G  +    L Q  GR  R+ +     +      
Sbjct: 901 LVCTTIVETGLDIANANTLIVENAHHMGLSQ----LHQLRGRVGRSRSRGYAYFLYPKGT 956

Query: 696 SIQLAIDETTRRREKQLEHNKKHN 719
                + ET+  R   +  N    
Sbjct: 957 ----TLTETSYDRLATIAQNNDLG 976


>gi|332978670|gb|EGK15368.1| ATP-dependent RNA helicase RhlE [Psychrobacter sp. 1501(2011)]
          Length = 519

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 81/215 (37%), Gaps = 22/215 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---ED------VYDE 574
            TI+ SAT      +   G I          +D   E +     V   +D      + D 
Sbjct: 219 QTIMCSAT-----WDGPVGKIAASFTNNPERIDIKAETKHIDESVYYADDFNHKNRILDH 273

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +          ++   TKR  E L + L E+  +  ++H ++   +R  II D++ GK  
Sbjct: 274 LLTQKDVNQ-AIIFAATKRSCETLAKSLKEQGHKASFLHGDLPQAKRTRIINDVKAGKIS 332

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   G+D+     V   D       R     +  IGR+ R   + + +   +I 
Sbjct: 333 ILVATDVAARGIDVSGITHVFNYD-----LPRQTEDYVHRIGRSGRAGRTGIAINICSID 387

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
              Q  +D   R  ++ +   +   + P+   + +
Sbjct: 388 DRPQ--LDAINRYLKRTMSVEEIEGMEPKKNTKDM 420


>gi|56416451|ref|YP_153525.1| transcription repair coupling factor [Anaplasma marginale str. St.
           Maries]
 gi|56387683|gb|AAV86270.1| transcription repair coupling factor [Anaplasma marginale str. St.
           Maries]
          Length = 1152

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 106/326 (32%), Gaps = 44/326 (13%)

Query: 172 LLLGVTGSGKTFTMAKV-IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           ++ GV        MA++ +E      + +       A L    K F     V        
Sbjct: 36  VITGVAPEFGDMLMAQMCMEDRHTSFVFVVQEGTSLAHLAKTLKFFDRERDVFI------ 89

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV--SSVSCIYGIGSVE 288
                  +P+ D+   K  S +  +   R      +       V+  +S +    +    
Sbjct: 90  -------LPKWDSIPHKGVSPSSLVMATRMKCLLDVSNAKAPYVMLTTSGAVAQKVLPAH 142

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           S +   + +  GD +    L+  LV   Y +       G+F V G+ ++IF   +++   
Sbjct: 143 SVASAAITVAPGDGLSMDALVQHLVACGYTQSSAVREVGSFAVRGEIVDIFQP-IDNKPT 201

Query: 349 RVSMFGNDIEEISEFYPLTGQK-IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
           R+    + +E I  F   T       + ++ IY  S  +     LN              
Sbjct: 202 RIDFCYDAVESIRYFDLDTQITDGGALPSLVIYPASEVIKTEENLNRFYTRY-------- 253

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                       Q+         E + +   C   E +   L      +   T+F+Y+P 
Sbjct: 254 -----------MQQYPNPDPAFAEAMLSRQKCMGEEQWLPLL----QADELSTIFDYVP- 297

Query: 468 DSLLFVDE--SHVTIPQISGMYRGDF 491
           ++ L + E  S   + ++ G    D+
Sbjct: 298 NAKLVLAEQASEEVLRRLEGAQEEDY 323



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 17/186 (9%)

Query: 516 EEWNCLRP--TTIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVED 570
           E+   LR     + +SATP    L     GI    ++R  P G +   + I      +  
Sbjct: 752 EQLKKLRNDVHVLSLSATPIPRTLHMSLSGIKNLSVLRTPPMGRMAVDIAIIQYDGNI-- 809

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +   I     +G R+  T       +    DL + +    + V   H    T    +I+ 
Sbjct: 810 IKTAILDEVSRGGRVFFTCPFISDIDGVLADLQKLVPNVKVEVA--HGRTSTRALDKIMN 867

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D   GKF VL+  +++  G+DIP    + + +AD  G  +    L Q  GR  R+     
Sbjct: 868 DFFDGKFSVLLTTSIIESGIDIPFANTIIVHNADMFGLAQ----LYQLKGRVGRSTLKGY 923

Query: 687 ILYADT 692
             +  +
Sbjct: 924 AYFIVS 929


>gi|291165175|gb|ADD81192.1| vasa [Katsuwonus pelamis]
          Length = 643

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 11/139 (7%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V   S R Q+ D+     +      R ++ V TKR A+ +  +L +  +    +H + +
Sbjct: 440 QVTKFSKREQLHDLLKTTGM-----ERTMVFVETKRQADFIATFLCQEKVPTTSIHGDRE 494

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + + D R GK  VLV  ++   GLDIP+   V   D        +    +  IGR
Sbjct: 495 QREREQALTDFRSGKCPVLVATSVAARGLDIPDVQHVVNFD-----LPNNIDEYVHRIGR 549

Query: 678 AARNVNSK-VILYADTITK 695
             R  N+   + + D    
Sbjct: 550 TGRCGNTGRAVSFYDPDAD 568


>gi|325119679|emb|CBZ55232.1| putative DEAD/DEAH box helicase [Neospora caninum Liverpool]
          Length = 694

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 84/228 (36%), Gaps = 31/228 (13%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIR--- 550
            + + GF         P   + ++ +RP   T++ SAT               ++++   
Sbjct: 457 RMMDMGFE--------PQVRKIFSQVRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQV 508

Query: 551 ------PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
                     V   VE+ S+  Q++     +      G + L+   TKR  + L   L  
Sbjct: 509 GKADLQANANVTQRVEVVSS-NQLQHRLLSVLQEDIAGQKTLIFCETKRQCDQLCRELRY 567

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           R +R   +H + +  ER  I+ D R G  ++L+  ++   GLDI +   V   D  K   
Sbjct: 568 RQLRALAIHGDKEQRERDRILHDFRKGDCEILLATDVASRGLDIHDVKFVINYDVPK--- 624

Query: 665 LRSKTSLIQTIGRAARNVNSKVIL------YADTITKSIQLAIDETTR 706
             +  S I  IGR  R  N    +      +      ++   I E  R
Sbjct: 625 --NIESYIHRIGRTGRAGNKGTAISFFQYDFYSPEKVTMARKICEVMR 670


>gi|225435708|ref|XP_002283489.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147854540|emb|CAN78578.1| hypothetical protein VITISV_013679 [Vitis vinifera]
          Length = 612

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 69/196 (35%), Gaps = 20/196 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYD 573
              T++ SAT    E+++     +   +          T L+   VE      +   + D
Sbjct: 341 VRQTMLFSAT-FPKEIQKLASDFLSNYVFLAVGRVGSSTDLIVQRVEFVHDTDKRSHLMD 399

Query: 574 EINLAAQQG-----LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            ++     G        L+ V TK+ A+ L  +L         +H +    ER + +R  
Sbjct: 400 LLHAQRANGVHGKQYLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREQALRSF 459

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           + G   +LV  ++   GLDIP    V   D             +  IGR  R   +    
Sbjct: 460 KSGVTPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKTGLAT 514

Query: 688 LYADTITKSIQLAIDE 703
            + +    S+  A+ E
Sbjct: 515 AFFNDNNSSLAKALSE 530


>gi|326490075|dbj|BAJ94111.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 346

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 81/226 (35%), Gaps = 34/226 (15%)

Query: 496 TLAEYGF-----RLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQII 549
            + + GF     R+   MD  P            T++ SAT PG  E+++     +E  I
Sbjct: 52  RMLDMGFEPQVRRIVEQMDMPP-------RGVRQTLLFSATFPG--EIQKMASDFLENYI 102

Query: 550 --------RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR-----ILLTVLTKRMAE 596
                     T L+   VE      +   + D ++       +      L+ V TKR A+
Sbjct: 103 FLAVGRVGSSTELIAQRVEFVQEADKRSHLMDLLHAQRDSSDQGKQALTLVFVETKRGAD 162

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            L  +L         +H +    ER   +R  + G+  +LV  ++   GLDIP    V  
Sbjct: 163 SLENWLCTNGFPATSIHGDRNQQEREHALRSFKSGQTPILVATDVAARGLDIPHVAHVVN 222

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKSIQLAI 701
            D             +  IGR  R   S +   + +    S+  +I
Sbjct: 223 FD-----LPNDIDDYVHRIGRTGRAGKSGIATAFFNDNNSSMAKSI 263


>gi|223056271|gb|ACM80368.1| vasa [Lytechinus variegatus]
          Length = 679

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 19/199 (9%)

Query: 496 TLAEYGF--RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
            + + GF   +   +D+ P    +       T++ SAT      E+ +  + + +    G
Sbjct: 392 RMVDMGFGPEIQKLIDH-PHMPPKGER---QTLMFSATFPPEIQEKARMYLNDYLFLTVG 447

Query: 554 LV-----DPPVEIRSARTQVEDVYDEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERN 606
            V     D    + S + Q E     + +   Q    R L+ V TKR A+ L   L + +
Sbjct: 448 RVGGAASDIEQRVLSVK-QYEKREKLMEILRDQNEDDRTLVFVETKRNADFLATLLSQSD 506

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
                +H + +  ER E +RD ++G+  VLV  ++   GLDIP+   V   D        
Sbjct: 507 FHATSIHGDRQQQEREEALRDFKIGRAPVLVATSVAARGLDIPKVKHVVNYD-----LPS 561

Query: 667 SKTSLIQTIGRAARNVNSK 685
                +  IGR  R  N+ 
Sbjct: 562 DIDEYVHRIGRTGRVGNTG 580


>gi|261417240|ref|YP_003250923.1| transcription-repair coupling factor [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373696|gb|ACX76441.1| transcription-repair coupling factor [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327048|gb|ADL26249.1| transcription-repair coupling factor [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 1132

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 71/208 (34%), Gaps = 12/208 (5%)

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
           +  +A       +  +V+A +   A       ++      V +F S       E  VP  
Sbjct: 38  SMMVANRFLKSPQNILVIAKDYRSAEVWVENLESMVGEEFVRFFPSLGLK-PYEIKVPFE 96

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
               E+     +           S  E+   +V    + +  +       + +  L++GD
Sbjct: 97  GVLEERLKFFRDV----------SHTEKPFVVVCPLDAFLMKLPEPGEIMRQVRTLRVGD 146

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
            +E   L    +   +  Q +    G F + G  +++    L     R+  +G++IE I 
Sbjct: 147 QLEPSSLRPWFLDHGFVEQPMVSGVGEFSIRGCIVDVN-CLLYPHPIRIEFYGDEIESIR 205

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPR 389
            F   + + +  +  I+ +    +  P 
Sbjct: 206 AFDIFSQRSLEQMTHIEFFPMGEFTVPE 233



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 19/196 (9%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
           T+ +SATP    L     G+    +I    +   PVE +    Q +D  + + I     +
Sbjct: 718 TLSMSATPIPRSLHLSMTGVRDISLINTPPINRLPVETK--LMQRDDEVLKNAILDELAR 775

Query: 582 GLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++ +    V T  ++ ED+     E  + V   H +++  E   ++      KFD+LV
Sbjct: 776 GGQVFVVNDRVQTIYKLTEDIEAMAPEAKVAVA--HGQMEDHELERVMDAFLSRKFDILV 833

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             +++  GLD+P    + I++A   G  +    L Q  GR  R+                
Sbjct: 834 STSIIESGLDVPNANTIIIMNAHHFGISQ----LYQMRGRVGRSSVLAKAFLVIPQRGE- 888

Query: 698 QLAIDETTRRREKQLE 713
              I + + RR K LE
Sbjct: 889 ---ISQESMRRLKALE 901


>gi|323344976|ref|ZP_08085200.1| transcription-repair coupling factor [Prevotella oralis ATCC 33269]
 gi|323094246|gb|EFZ36823.1| transcription-repair coupling factor [Prevotella oralis ATCC 33269]
          Length = 1177

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 87/236 (36%), Gaps = 19/236 (8%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A  +LL+      +   L G+  S      A + + + R  + +  +   A   Y +
Sbjct: 15  QAGAFEKLLE--DRSVRNIFLQGLMASATPMFFASIAKQINRTVVFVLNDADEAGYFYHD 72

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL----- 267
                    V +  S Y              Y +++++ NE +     +   S       
Sbjct: 73  LVQMMGAEQVLFLPSSYRRAVK---------YGQRDAA-NEILRTEVLARISSFPLDKEQ 122

Query: 268 ERNDCIVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
           E+    +V+    +  +  S +   + I++L++G +V+  ++   L +  +   D     
Sbjct: 123 EKAPLYIVTYPEALAELVVSKQRLDERILKLQVGQTVDVIQIEKQLREFGFNEVDYVYEP 182

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           G F + G  ++++    E + +R+  FG++I+ I  F             I+I   
Sbjct: 183 GQFALRGSILDVYSFSCE-LPFRIDFFGDEIDTIRTFTVQDQLSKDKKNVIEIVPE 237



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 74/192 (38%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     I+R       P+    +    E + D IN    +  
Sbjct: 767 TLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIHTELSTYGHEVIADAINFEMSRNG 826

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++           ++   ++E     R    H ++   E   II       +DVL+   +
Sbjct: 827 QVFFVNDRISGLPEIAYLIHEHVPDCRVAIAHGQMSPDELERIIMGFINYDYDVLLSTTI 886

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I DA + G     + L Q  GR  R+ N K   Y     KS+   +
Sbjct: 887 VENGIDIPNANTIIINDAHRFGL----SDLHQMRGRVGRS-NRKAFCYLLAPPKSV---L 938

Query: 702 DETTRRREKQLE 713
               RRR + LE
Sbjct: 939 TPEARRRLEALE 950


>gi|51317205|gb|AAT99858.1| unknown [Diachasmimorpha longicaudata entomopoxvirus]
          Length = 379

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 22/207 (10%)

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSART 566
           FE +       I++SAT  S  +   Q  + + +        +   G+    + ++    
Sbjct: 173 FEFFESHV-QVILLSATVPSRVINTSQVFMRDPVKILVKNAELTLEGIRQYYINVKKNDF 231

Query: 567 QVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           + E   D+YD ++L      + L+   T+R  + L E L  RN     +H ++   ER  
Sbjct: 232 KAETLFDLYDHLSLT-----QTLIFCNTRRQVDVLMECLTNRNFTASSIHGDMSQQERDF 286

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           I+++ R GK  +L+  NLL  G+D+ +  LV   D        ++ + I  IGR+ R   
Sbjct: 287 IMKEFRDGKTRILLSTNLLARGIDVQQISLVINYD-----LPHNRENYIHRIGRSGRFGR 341

Query: 684 SKVILYADTITKSIQLAIDETTRRREK 710
             + +   T  +  +LA  ET    + 
Sbjct: 342 KGIAINFITEDELPKLAELETFYNTKI 368


>gi|83318931|emb|CAJ38803.1| Vasa protein isoform [Platynereis dumerilii]
          Length = 732

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 89/248 (35%), Gaps = 28/248 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++I +          + + ++  +   +  R     + GF  P         F+
Sbjct: 426 TPGRLLDFIGKG--------KINLSKVKYLILDEADRM---LDMGFE-PEIRK-LVTTFD 472

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV-----DPPVEIRSART--QVE 569
                +  T++ SAT  +   +  +  + E +    G V     D   E+       + E
Sbjct: 473 MPEKGQRQTLMFSATFAAEIQQLAKEFLSEYVFVTVGRVGGANSDITQEVHQVTKYEKRE 532

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + + +N A     R L+ + TKR A+ L  YL +       +H +    ER E + D +
Sbjct: 533 KLVEILNQAGTD--RTLVFLETKRSADFLAAYLSQEQYPATSIHGDRLQREREEALLDFK 590

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVIL 688
            G+  +L+  ++   GLDIP    V   D             +  IGR  R  N  K   
Sbjct: 591 TGRAPILIATSVAARGLDIPGVKHVINYD-----LPSGIDEYVHRIGRTGRCGNLGKATS 645

Query: 689 YADTITKS 696
           + D     
Sbjct: 646 FFDPDVNQ 653


>gi|70663480|emb|CAJ15139.1| vasa homlogue [Platynereis dumerilii]
          Length = 712

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 89/248 (35%), Gaps = 28/248 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++I +          + + ++  +   +  R     + GF  P         F+
Sbjct: 406 TPGRLLDFIGKG--------KINLSKVKYLILDEADRM---LDMGFE-PEIRK-LVTTFD 452

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV-----DPPVEIRSART--QVE 569
                +  T++ SAT  +   +  +  + E +    G V     D   E+       + E
Sbjct: 453 MPEKGQRQTLMFSATFAAEIQQLAKEFLSEYVFVTVGRVGGANSDITQEVHQVTKYEKRE 512

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + + +N A     R L+ + TKR A+ L  YL +       +H +    ER E + D +
Sbjct: 513 KLVEILNQAGTD--RTLVFLETKRSADFLAAYLSQEQYPATSIHGDRLQREREEALLDFK 570

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVIL 688
            G+  +L+  ++   GLDIP    V   D             +  IGR  R  N  K   
Sbjct: 571 TGRAPILIATSVAARGLDIPGVKHVINYD-----LPSGIDEYVHRIGRTGRCGNLGKATS 625

Query: 689 YADTITKS 696
           + D     
Sbjct: 626 FFDPDVNQ 633


>gi|307105760|gb|EFN54008.1| hypothetical protein CHLNCDRAFT_31911 [Chlorella variabilis]
          Length = 556

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 17/215 (7%)

Query: 504 LPSCMDNRPLRFEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQII--------RPTG 553
           LP    N P+  EE         T++ SAT    E+++     +   I          T 
Sbjct: 233 LPRPRRNPPIVDEEDMPRPGERQTLLFSAT-FPKEIQRLAADFLHNYIFLTVGRVGSSTD 291

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           L+   +E    + + + V D +    ++GL  L+ V TK+ A+ L ++L    +    +H
Sbjct: 292 LIVQVIEYVPIQDKRQMVLDLLQ-TLEKGL-TLIFVETKKGADALEDFLCRNGLPATSIH 349

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            +    ER   +R  R G+  VLV  ++   GLDIP    V   D   +  +      I 
Sbjct: 350 GDRSQAEREAALRSFRTGRTPVLVATDVAARGLDIPHVTHVINFDLPSD--IDDYVHRIG 407

Query: 674 TIGRAARNVNSKVILYADTITKSIQLA--IDETTR 706
             GRA +   +           S +L   + ET +
Sbjct: 408 RTGRAGKKGLATAFFSEKDTGISSKLVEILSETNQ 442


>gi|205277319|ref|NP_001034520.2| vasa RNA helicase [Tribolium castaneum]
 gi|270011102|gb|EFA07550.1| vasa [Tribolium castaneum]
          Length = 627

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 72/184 (39%), Gaps = 10/184 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP---VEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT      +     ++  I    G+V      VE +  +    D   ++    +
Sbjct: 394 QTLMFSATFPEEVQQLAGKFLLNYIFIAVGIVGSACTDVEQKFFQVSKFDKRSKLVSILE 453

Query: 581 Q--GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +    R L+ V TKR A+ L  +L E+NI+   +H +    ER + + D + G   VLV 
Sbjct: 454 KAPNERTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFKTGHRKVLVA 513

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             +   GLDI +   V   D  K     S    +  IGR  R  N           +   
Sbjct: 514 TGVAARGLDIKDVQHVINYDLPK-----SIDEYVHRIGRTGRVGNKGKATSFFDEDQDRN 568

Query: 699 LAID 702
           LA D
Sbjct: 569 LASD 572


>gi|58429986|gb|AAW78361.1| vasa RNA helicase [Tribolium castaneum]
          Length = 580

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 72/184 (39%), Gaps = 10/184 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP---VEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT      +     ++  I    G+V      VE +  +    D   ++    +
Sbjct: 346 QTLMFSATFPEEVQQLAGKFLLNYIFIAVGIVGSACTDVEQKFFQVSKFDKRSKLVSILE 405

Query: 581 Q--GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +    R L+ V TKR A+ L  +L E+NI+   +H +    ER + + D + G   VLV 
Sbjct: 406 KAPNERTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFKTGHRKVLVA 465

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             +   GLDI +   V   D  K     S    +  IGR  R  N           +   
Sbjct: 466 TGVAARGLDIKDVQHVINYDLPK-----SIDEYVHRIGRTGRVGNKGKATSFFDEDQDRN 520

Query: 699 LAID 702
           LA D
Sbjct: 521 LASD 524


>gi|255712573|ref|XP_002552569.1| KLTH0C07964p [Lachancea thermotolerans]
 gi|238933948|emb|CAR22131.1| KLTH0C07964p [Lachancea thermotolerans]
          Length = 398

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 82/202 (40%), Gaps = 24/202 (11%)

Query: 515 FEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSA 564
           ++ +  L      +VVSAT     LE  +  + + +        I   G+    V +   
Sbjct: 189 YDIFAKLPKSVQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLEGIKQYHVNVDRE 248

Query: 565 RTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
             + +   D+YD + +      + ++   TK++ + L+  L + N  V  MH ++K  +R
Sbjct: 249 EWKFDTLCDLYDSLTIT-----QCVIFCNTKKVVDWLSSKLLQANFAVASMHGDMKQEDR 303

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             ++ D R G   VL+  ++   G+D+ +  LV   D        +  + I  IGR+ R 
Sbjct: 304 DRVMNDFRSGTSRVLISTDVWARGIDVQQVSLVINYD-----LPDNLENYIHRIGRSGRF 358

Query: 682 VNSKV-ILYADTITKSIQLAID 702
               V I +          AI+
Sbjct: 359 GRKGVAINFITRDDAQGLKAIE 380


>gi|332849251|ref|XP_001160875.2| PREDICTED: eukaryotic initiation factor 4A-III-like, partial [Pan
           troglodytes]
          Length = 309

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 109 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 168

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 169 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 223

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 224 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 278

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 279 VKNDDIRILRDIEQ 292


>gi|218187595|gb|EEC70022.1| hypothetical protein OsI_00586 [Oryza sativa Indica Group]
          Length = 754

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 70/183 (38%), Gaps = 14/183 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           +  T++ +AT      +    ++   +    G  D  V  +S    V+ +         D
Sbjct: 404 KRQTLMFTATWPKEVRKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLD 463

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  + + G +I++   TKRM + L   L  R      +H +    ER  ++ + R G+ 
Sbjct: 464 QILRSQEPGSKIIIFCSTKRMCDQLARNLA-RQYGASAIHGDKSQAERDSVLSEFRSGRC 522

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDI +  +V   D     F       +  IGR  R   + V       
Sbjct: 523 PILVATDVAARGLDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGRAGATGVAYTFFCD 577

Query: 694 TKS 696
             S
Sbjct: 578 QDS 580


>gi|115434786|ref|NP_001042151.1| Os01g0172200 [Oryza sativa Japonica Group]
 gi|55296347|dbj|BAD68263.1| putative p68 RNA helicase [Oryza sativa Japonica Group]
 gi|113531682|dbj|BAF04065.1| Os01g0172200 [Oryza sativa Japonica Group]
 gi|215713416|dbj|BAG94553.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 759

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 70/183 (38%), Gaps = 14/183 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           +  T++ +AT      +    ++   +    G  D  V  +S    V+ +         D
Sbjct: 408 KRQTLMFTATWPKEVRKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLD 467

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  + + G +I++   TKRM + L   L  R      +H +    ER  ++ + R G+ 
Sbjct: 468 QILRSQEPGSKIIIFCSTKRMCDQLARNLA-RQYGASAIHGDKSQAERDSVLSEFRSGRC 526

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDI +  +V   D     F       +  IGR  R   + V       
Sbjct: 527 PILVATDVAARGLDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGRAGATGVAYTFFCD 581

Query: 694 TKS 696
             S
Sbjct: 582 QDS 584


>gi|75287517|sp|Q5VQL1|RH14_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 14
 gi|55296348|dbj|BAD68264.1| putative p68 RNA helicase [Oryza sativa Japonica Group]
 gi|222617825|gb|EEE53957.1| hypothetical protein OsJ_00557 [Oryza sativa Japonica Group]
 gi|240065031|gb|ACS44654.1| ATP-dependent RNA helicase DB10 [Oryza sativa Japonica Group]
 gi|240065056|gb|ACS44655.1| ATP-dependent RNA helicase DB10 [Oryza sativa Indica Group]
          Length = 708

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 70/183 (38%), Gaps = 14/183 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           +  T++ +AT      +    ++   +    G  D  V  +S    V+ +         D
Sbjct: 357 KRQTLMFTATWPKEVRKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLD 416

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  + + G +I++   TKRM + L   L  R      +H +    ER  ++ + R G+ 
Sbjct: 417 QILRSQEPGSKIIIFCSTKRMCDQLARNLA-RQYGASAIHGDKSQAERDSVLSEFRSGRC 475

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDI +  +V   D     F       +  IGR  R   + V       
Sbjct: 476 PILVATDVAARGLDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGRAGATGVAYTFFCD 530

Query: 694 TKS 696
             S
Sbjct: 531 QDS 533


>gi|198423899|ref|XP_002126471.1| PREDICTED: similar to Eukaryotic initiation factor 4A-III
           (Eukaryotic translation initiation factor 4A isoform 3)
           (ATP-dependent RNA helicase eIF4A-3) (ATP-dependent RNA
           helicase DDX48) (DEAD box protein 48) (Eukaryotic
           initiation factor 4A-like NUK-34) (Nucl... [Ciona
           intestinalis]
          Length = 409

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             +++SAT     LE     + + I        +   G+    V +     + +   D+Y
Sbjct: 211 QVVLLSATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVDKEEWKFDTLCDLY 270

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + LTE + + N  V  MH ++   ER EI++  R G+
Sbjct: 271 DTLTIT-----QAVIFCNTKRKVDWLTEKMRDANFTVLCMHGDMPQKERTEIMKQFRSGE 325

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +  
Sbjct: 326 SRVLICTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVSINFVK 380

Query: 692 TITKSIQLAIDE 703
                I   I++
Sbjct: 381 NDDIRILRDIEQ 392


>gi|313217515|emb|CBY38596.1| unnamed protein product [Oikopleura dioica]
 gi|313229431|emb|CBY24018.1| unnamed protein product [Oikopleura dioica]
          Length = 401

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
                +VSAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 201 ATQVCLVSATLPHEILEMTHKFMSDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 260

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + L E + E N  V  MH ++   ER EI+R+ R 
Sbjct: 261 LYDTLTIT-----QAVIFCSTKRKVDWLAEKMREANFTVSAMHGDMPQKERNEIMREFRS 315

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 316 GQTRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 370

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 371 VRNDDIRILRDIEQ 384


>gi|297817170|ref|XP_002876468.1| hypothetical protein ARALYDRAFT_486308 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322306|gb|EFH52727.1| hypothetical protein ARALYDRAFT_486308 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 639

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 71/196 (36%), Gaps = 20/196 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYD 573
              T++ SAT    E+++     +   I          T L+   VE      +   + D
Sbjct: 324 VRQTMLFSAT-FPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMD 382

Query: 574 EINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            ++   + G +      L+ V TK+ A+ L  +L         +H +    ER   +R  
Sbjct: 383 LLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSF 442

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           + G+  +LV  ++   GLDIP    V   D             +  IGR  R  NS    
Sbjct: 443 KTGRTPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGNSGLAT 497

Query: 688 LYADTITKSIQLAIDE 703
            + +    S+   + E
Sbjct: 498 AFFNDNNTSMAKPLAE 513


>gi|156105935|gb|ABU49329.1| vasa [Ilyanassa obsoleta]
          Length = 411

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 90/254 (35%), Gaps = 33/254 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++        ++   + + ++  +   +  R     + GF  PS    R L   
Sbjct: 99  TPGRLLDF--------IERGKIGLGKVKYLILDEADRM---LDMGFE-PSI---RKLVDG 143

Query: 517 EWN--CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV--------DPPVEIRSART 566
                  +  T++ SAT      +     + + +    G+V           +E+   R 
Sbjct: 144 LGMPPKSQRQTLLFSATFKPDIQQLAADFMKDYLFITVGIVGGACTDVEQTFLEVD--RV 201

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q  +   +I   +    R+L+ V  KR A+ L  YL +       +H +    ER E +R
Sbjct: 202 QKREYLCDILNTSGTN-RVLVFVGQKRNADFLASYLSQSGYPTTTIHGDRLQREREEALR 260

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D + GK  VL+  N+   GLDIP+   V   D             +  IGR  R  N   
Sbjct: 261 DFKSGKSPVLIATNVAARGLDIPDVTHVVNYD-----LPMDIDEYVHRIGRTGRCGNLGK 315

Query: 687 ILYADTITKSIQLA 700
                +      LA
Sbjct: 316 ATSFYSHDTDANLA 329


>gi|332670437|ref|YP_004453445.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332339475|gb|AEE46058.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
          Length = 596

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 76/193 (39%), Gaps = 15/193 (7%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE----IRSARTQVEDVYDE 574
           R    + SAT   P     EQ     VE  +         V     +   R ++  +   
Sbjct: 199 RRQVALFSATMPAPIRRVAEQHLHQPVEITVARQSSTVTTVRQTYAVVPYRHKIGALGRV 258

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           + +        ++ V T+  AE++   L ER I   ++  +V   +R +I+  LR G  D
Sbjct: 259 LAVTDAD--ATIVFVRTRGAAEEVGSALVERGISAAHISGDVAQSDREKIVDRLRSGALD 316

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           VLV  ++   GLD+   GLV   D  +E       + +  IGR  R     V + +    
Sbjct: 317 VLVATDVAARGLDVERIGLVVNFDVPRE-----AETYVHRIGRTGRAGREGVALSFVTPA 371

Query: 694 TKSIQLAIDETTR 706
            +S    I+ TTR
Sbjct: 372 EQSRLRTIERTTR 384


>gi|302753758|ref|XP_002960303.1| hypothetical protein SELMODRAFT_75384 [Selaginella moellendorffii]
 gi|302767980|ref|XP_002967410.1| hypothetical protein SELMODRAFT_168957 [Selaginella moellendorffii]
 gi|300165401|gb|EFJ32009.1| hypothetical protein SELMODRAFT_168957 [Selaginella moellendorffii]
 gi|300171242|gb|EFJ37842.1| hypothetical protein SELMODRAFT_75384 [Selaginella moellendorffii]
          Length = 575

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 94/254 (37%), Gaps = 51/254 (20%)

Query: 496 TLAEYGFRLPSCMD---NRPLRFEEWNCLRPTTIVVSATPGSWELE--------QCQGII 544
            + + GF LP   +   N P         +  T++ SAT    E+E        +   + 
Sbjct: 288 RMLDMGF-LPQIKEVMQNLP--------KKHQTLLFSAT-MPEEIEALAQEYLTKPVQVK 337

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR-------ILLTVLTKRMAED 597
           V ++  PT  V   +E    + +++ +   +  ++ Q  R        ++ V  K   +D
Sbjct: 338 VGKVSSPTSNVLQSLEKVDEKDKIDYLLAMLVESSNQSERAGQPPPLTIVFVERKARCDD 397

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           + + L  + ++   +H      ER   +RD R G   +LV  ++   GLD+     V  L
Sbjct: 398 VADALLAQGLKAAALHGGRTQGEREAALRDFRKGAISILVATDVASRGLDVTGVAHVVNL 457

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADT---ITKSIQLAIDETT------- 705
           D  K          +  IGR  R   S     LY D    +   I+ AI E         
Sbjct: 458 DLPKV-----MEDYVHRIGRTGRAGASGRATSLYTDRDAFLVAQIRKAIAEAEAGNVMAF 512

Query: 706 ------RRREKQLE 713
                 RR+E++  
Sbjct: 513 ATGKAARRKEREEA 526


>gi|294101748|ref|YP_003553606.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense
           DSM 12261]
 gi|293616728|gb|ADE56882.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense
           DSM 12261]
          Length = 1025

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 79/215 (36%), Gaps = 26/215 (12%)

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           +   Q+ L V G  +    A ++     P +V+  ++  A    S+F+N +    V    
Sbjct: 3   KSGEQVHLPVDGGAR----AWILGGASVPLLVVFSDQRQAEDFVSDFENLWEGEIVRLLY 58

Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGS 286
                          +  +  E   N+ +   R        +    +  S      G+ S
Sbjct: 59  ---------------ELPLSVEGVRNKSLLLQRGETLSKWKQEKGILATSPG----GLLS 99

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLED 345
                + +  L+     E+  LL  L    Y+R D+    G + V G  ++I+ P++   
Sbjct: 100 PFLTGEGVFPLRREMGEERGRLLRWLEVAGYERVDLVWTPGQYVVRGFIVDIYDPAYA-- 157

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           +  R+  F   +E I  F+P +      ++ I+I+
Sbjct: 158 LPIRIEFFDEIVESIRSFHPQSQMSAATLDEIEIH 192



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 18/190 (9%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L    +G+    II   P   V     +   +  +  ++  +     +
Sbjct: 644 VLTLSATPIPRTLSLSLRGLRSFSIISTPPYNRVPVLTMVGPRKKNL--IHRAVLQELNR 701

Query: 582 GLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G ++          K   E+L     E  I +   H ++   +    + D   G  D+LV
Sbjct: 702 GGQVFFVSNRINRLKGKYEELKIMFPEARISMA--HGQMAEKDLERTMLDFYNGNLDILV 759

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLDIP    + + DA + G  +    + Q  GR  R        +    T  +
Sbjct: 760 CTTIVESGLDIPRANTLIVDDAQELGLAQ----MYQLRGRVGRREEGAYAYFLYPETMPL 815

Query: 698 QLAIDETTRR 707
           Q    ET  R
Sbjct: 816 QK---ETMER 822


>gi|291165181|gb|ADD81195.1| vasa [Thunnus orientalis]
          Length = 192

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 11/139 (7%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V   S R Q+ D+            R ++ V TKR A+ +  +L +  +    +H + +
Sbjct: 29  QVTKFSKREQLLDLLKTTGT-----ERTMVFVETKRQADFIATFLCQEKVPTTSIHGDRE 83

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + + D R GK  VLV  ++   GLDIP+   V   D        +    +  IGR
Sbjct: 84  QREREQALADFRSGKCPVLVATSVAARGLDIPDVQHVVNFD-----LPNNIDEYVHRIGR 138

Query: 678 AARNVNSK-VILYADTITK 695
             R  N+   + + D    
Sbjct: 139 TGRCGNTGRAVSFYDPDAD 157


>gi|268573672|ref|XP_002641813.1| C. briggsae CBR-INF-1 protein [Caenorhabditis briggsae]
 gi|187026294|emb|CAP34430.1| CBR-INF-1 protein [Caenorhabditis briggsae AF16]
          Length = 402

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 17/208 (8%)

Query: 515 FEEWNCLRP--TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQVE 569
           ++ +  +      +++SAT  +  L+     +   +  +++   L    +       Q +
Sbjct: 193 YDVFRSMPQDVQVVLLSATMPAEVLDVTDRFMRNPIRILVKKDELTLEGIRQFYINVQKD 252

Query: 570 ----DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
               D   ++        + ++   T+R  + LTE +  +   V  +H ++   ER  I+
Sbjct: 253 EWKFDCLCDLYNVVNV-TQAVIFCNTRRKVDQLTEQMTSKQFTVSCLHGDMDQAERDTIM 311

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           R+ R G   VL+  ++L  G+D+ +  LV   D        ++ + I  IGR+ R     
Sbjct: 312 REFRSGSSRVLITTDILARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKG 366

Query: 686 VILYADTITKSIQLAIDETTRRREKQLE 713
           V +   T   + Q  + E       Q+E
Sbjct: 367 VAINFVTENDARQ--LKEIETYYTTQIE 392


>gi|156337146|ref|XP_001619808.1| hypothetical protein NEMVEDRAFT_v1g782 [Nematostella vectensis]
 gi|156203704|gb|EDO27708.1| predicted protein [Nematostella vectensis]
          Length = 624

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 62/171 (36%), Gaps = 20/171 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII---------RPTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E+++  G  +   +           + +    +E+     +     D 
Sbjct: 407 QTLMFSAT-FPEEIQRLAGDFLNDYLFLTVGRVGGTTSDIEQTVIEVTDNEKR-----DR 460

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +        R L+ V +KR A+ L  +L         +H +    ER E + D R G+  
Sbjct: 461 LTQILGDADRTLVFVESKRSADFLAIFLSGEGFPTTSIHGDRLQQEREEALDDFRKGRCP 520

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           VL+  N+   GLDI +   V   D             +  IGR  R  N  
Sbjct: 521 VLIATNVAARGLDIDDVKHVINFD-----LPSDIDEYVHRIGRTGRIGNKG 566


>gi|149177449|ref|ZP_01856053.1| transcription-repair coupling factor [Planctomyces maris DSM 8797]
 gi|148843782|gb|EDL58141.1| transcription-repair coupling factor [Planctomyces maris DSM 8797]
          Length = 1112

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 90/244 (36%), Gaps = 22/244 (9%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE------------AMQRP 195
            P   Q  ++  L+  +   +    +     SG++ T+                 A+   
Sbjct: 3   TPRDSQIQSMQDLVPVLSRSDGFAAVTAALRSGQSGTIDGAWGGSCALAAASIATALDSV 62

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            +++ P      +   +  +F     +      ++    E  V   DT       +   +
Sbjct: 63  LLIVLPRLSEIDEFTGDLASFLG--TIPEIFPAWETLPDEHDV--ADTVFGGRLRV---L 115

Query: 256 DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQ 315
            R++HS           IV S  + +  + S +       ++++GD ++    +  L+++
Sbjct: 116 SRLQHSGGNE--STPQVIVTSFPALLQPVPSRKQREAATRRIQVGDEIDTDAFMKWLLER 173

Query: 316 QYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
            ++R     + G F + G  ++++      +  R+  FG+++E I +F   T + +   +
Sbjct: 174 GFERTTAIQLPGEFSMHGGILDLYSPDSA-LPIRIEFFGDEVESIRQFDVETQRTLETCQ 232

Query: 376 TIKI 379
            + +
Sbjct: 233 QVDL 236



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 70/198 (35%), Gaps = 16/198 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP-PVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      I +     T   D  P+E R  R   E +   +     +  
Sbjct: 716 VLTLSATPVPRTLHMSLLGIRDISNLTTAPRDRVPIETRITRFDPELIRHAMVRELNRNG 775

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRV-----RYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++           DL +Y       V        H ++K  E    + +   GK D+ V 
Sbjct: 776 QV---YFVHNRVHDLQKYADRIQQIVPEASIGIGHGQMKETELEAAMLNFVSGKVDIFVC 832

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  GLDIP    + I DA   G     + L Q  GR  R+ + +   Y       + 
Sbjct: 833 TTIIESGLDIPNANTIFIHDAGNHGL----SDLHQLRGRVGRS-HHRAYCYLLLRDGQML 887

Query: 699 LAIDETTRRREKQLEHNK 716
             I    +R +   E+++
Sbjct: 888 TPIA--AKRLKAIEEYSE 903


>gi|195144578|ref|XP_002013273.1| GL23489 [Drosophila persimilis]
 gi|194102216|gb|EDW24259.1| GL23489 [Drosophila persimilis]
          Length = 649

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 13/164 (7%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++          +++S       +  +I   ++   +I++ V TKR  +
Sbjct: 416 LELSANHNIRQVVEVCDEFSKEEKLKS-------LLSDIYDTSENPGKIIIFVETKRRVD 468

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L  ++    +R   +H +    ER  ++R+ R GK ++LV  ++   GLD+     V  
Sbjct: 469 NLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVIN 528

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            D     + ++    I  IGR  R+ N+K   +A     + + A
Sbjct: 529 FD-----YPQNSEDYIHRIGRTGRS-NTKGTSFAFFTKNNAKQA 566


>gi|194333556|ref|YP_002015416.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           aestuarii DSM 271]
 gi|194311374|gb|ACF45769.1| DEAD/DEAH box helicase domain protein [Prosthecochloris aestuarii
           DSM 271]
          Length = 607

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 75/197 (38%), Gaps = 18/197 (9%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V T+   +DL+E L  R      +  E+   +R + I  L+ GK +++V  ++   
Sbjct: 273 VIIFVRTRTATQDLSEKLRARGYAAAALSGEMVQHQREKTIDQLKNGKLNIIVATDVAAR 332

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+  +   S+   I+ 
Sbjct: 333 GLDVERVTHVINYD-----IPSDTESYVHRIGRTGRAGRSGDAILFVTSREMSMLRTIER 387

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
             RR   ++E      IN + + +   ++ D I  ED    +  ++              
Sbjct: 388 AVRRSIDRMELPSAEMINDKRIAKFKQQISDVISTEDLEVFSDLVEQYCRDHDST----- 442

Query: 764 LKSLRKQMHLAADNLNF 780
                  M  AA  L F
Sbjct: 443 -------MLQAAAALAF 452


>gi|198419625|ref|XP_002130533.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Ciona intestinalis]
          Length = 672

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 61/319 (19%), Positives = 108/319 (33%), Gaps = 30/319 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D       Q+  +          + + GF  P   +     + E     P T++ SAT
Sbjct: 222 IMDHVQKGNLQLGSVEHVVLDEVDQMLDMGFA-PKVEEILGYAYTEEREGPPQTLLFSAT 280

Query: 532 PGSW-------ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ---- 580
              W        +   + + V+ I +        VE  + R Q  D  + I    Q    
Sbjct: 281 CPPWVRNTSRKYMRPSETVHVDTIGKSLVRTATTVEHLAIRCQYSDRAECIGNVVQMYSG 340

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           Q  R ++   TK+ A +L      +  + + +H +++  +R   ++  R G    LV  N
Sbjct: 341 QHGRAMIFTDTKKDANELVVCEALQQQKAQVLHGDIEQRQREITLKAYRDGTVRCLVATN 400

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           +   GLDIPE  LV       +       S I   GR  R   + V +      + + + 
Sbjct: 401 VAARGLDIPEIDLVIQTSPPSD-----IDSYIHRSGRTGRAGRTGVCVCFYKPREDMMIK 455

Query: 701 IDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             E    R   ++        P+ + +  + + I  + L D   T   +   +   S   
Sbjct: 456 KVE----RVAGIKFKMVGPPQPKDIVKASVNDAIASLDLVDKKITAEFMKHAEQVASNHA 511

Query: 760 GKAHLKSLRKQMHLAADNL 778
           G A        M   A  L
Sbjct: 512 GGA--------MEALASAL 522


>gi|68037499|gb|AAY84883.1| DEAD-box ATPase-RNA-helicase [Triticum aestivum]
          Length = 381

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 73/189 (38%), Gaps = 15/189 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           +  T++ +AT      +    ++   +    G  D  V  +S    VE           D
Sbjct: 69  KRQTLMFTATWPREVRKIASDLLTNPVQVNIGNTDELVANKSITQHVEVTTSFEKGRRLD 128

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I    + G ++++   TKRM + L+  L  R      +H +    ER  ++ + R G+ 
Sbjct: 129 QILRQQEPGSKVIIFCSTKRMCDQLSRNLS-RQYGASAIHGDKSQAERDSVLSEFRTGRC 187

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLD+ +  +V   D     F       +  IGR  R   +  I Y    
Sbjct: 188 PILVATDVAARGLDVKDIRVVVNYD-----FPTGVEDYVHRIGRTGRAGATG-IAYTFFC 241

Query: 694 TKSIQLAID 702
            +  + A D
Sbjct: 242 DQDSKYASD 250


>gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
           HB-1]
 gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
           HB-1]
          Length = 417

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 108/294 (36%), Gaps = 33/294 (11%)

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
            G+ R D  R A L E    L                    T++ SAT   +E+ +  G 
Sbjct: 137 RGVLRLDRVRYAVLDEADQMLDMGFIEDIEEILSKTPKEKQTLLFSAT-MPYEIRRLIGR 195

Query: 544 IVEQIIRP----TGLVDPPVEIRSARTQVEDVYDEINL--AAQQGLRILLTVLTKRMAED 597
            ++   +       L+ P V+ R    + ED    +       +G+  ++ V TKR A D
Sbjct: 196 YLKPDYKNVKVGKQLITPKVKQRIILVRSEDKIKALEKLLKEHEGVSTIVFVKTKRDAAD 255

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           + + L  R I  R +H ++   +R  ++R  R GK  VLV  ++   G+DI + GLV   
Sbjct: 256 IEKELQRRGINARAIHGDLSQRQREFVMRAFREGKVKVLVATDVAARGIDIKDVGLVINY 315

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
           +        +  S +  IGR  R     + +            + E  +RR     +  K
Sbjct: 316 E-----LPENPESYVHRIGRTGRAGREGLAISL----------VAEPEKRR----LYRIK 356

Query: 718 --HNINPQ-----SVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
               + P+     +VKE   E+++                     S ++  A L
Sbjct: 357 GLKGVRPERFRVNTVKELKKELLEADANSLPPYVKRLASELLSERSPEELVAVL 410


>gi|291165171|gb|ADD81190.1| vasa [Scomber australasicus]
          Length = 645

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V   S R Q+ D+     +      R ++ V TKR A+ +  +L +  +    +H + +
Sbjct: 441 QVTKFSKREQLLDLLKTTGM-----ERTMVFVETKRQADFIATFLCQEKVPTTSIHGDRE 495

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + + D R GK  V+V  ++   GLDIP+   V   D        +    +  IGR
Sbjct: 496 QREREQALADFRSGKCPVMVATSVAARGLDIPDVQHVVNFD-----LPNNIDEYVHRIGR 550

Query: 678 AARNVNSK-VILYADTITKS 696
             R  N+   + + D    S
Sbjct: 551 TGRCGNTGRAVSFYDPDGDS 570


>gi|198452778|ref|XP_001358938.2| GA10214 [Drosophila pseudoobscura pseudoobscura]
 gi|198132073|gb|EAL28081.2| GA10214 [Drosophila pseudoobscura pseudoobscura]
          Length = 738

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 13/164 (7%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++          +++S       +  +I   ++   +I++ V TKR  +
Sbjct: 507 LELSANHNIRQVVEVCDEFSKEEKLKS-------LLSDIYDTSENPGKIIIFVETKRRVD 559

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L  ++    +R   +H +    ER  ++R+ R GK ++LV  ++   GLD+     V  
Sbjct: 560 NLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVIN 619

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            D     + ++    I  IGR  R+ N+K   +A     + + A
Sbjct: 620 FD-----YPQNSEDYIHRIGRTGRS-NTKGTSFAFFTKNNAKQA 657


>gi|84468270|dbj|BAE71218.1| putative DEAD-box protein abstrakt [Trifolium pratense]
          Length = 588

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 84/223 (37%), Gaps = 23/223 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      D+    F+ +   R  T++ SAT  +      +  +V+ II   G  
Sbjct: 310 RLVDLGFE-----DDIREVFDHFKAQR-QTLLFSATMPTKIQNFARSALVKPIIVNVGRA 363

Query: 555 ----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + Q   +   +    +    +L+    K   +D+ EYL  + +   
Sbjct: 364 GAANLDVIQEVEYVK-QEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAV 422

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER   I   + GK DVLV  ++  +GLD P+   V   D   E       +
Sbjct: 423 AIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE-----IEN 477

Query: 671 LIQTIGRAARNVNSKVILYADTITKS------IQLAIDETTRR 707
            +  IGR  R   + +        +S      ++  + E  +R
Sbjct: 478 YVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQR 520


>gi|229592757|ref|YP_002874876.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
 gi|229364623|emb|CAY52530.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 444

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 94/277 (33%), Gaps = 32/277 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   +++L         + Q+  +   +  R     + GF        R L   
Sbjct: 131 TPGRLIDLFRQNAL--------KLNQLQTLVLDEADRM---LDLGFSEELANIYRMLP-- 177

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVEDV 571
                +  T++ SAT           ++ + +   + P  +    V+  +     + +  
Sbjct: 178 ----KKRQTLLFSATFSDEIRLLAGQMLNDPLTIEVSPRNVAANTVKQWVVPVDKKRKPE 233

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                +   +  ++L+   T+   + L + L    I    +H +     R   +   +  
Sbjct: 234 LFVHLMRKGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSS 293

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYA 690
           +  +LV  ++   GLDI +  LV   D             I  IGR  R  N+   I   
Sbjct: 294 EVQILVATDVAARGLDIEDLPLVVNFDLPIV-----AEDYIHRIGRTGRAGNTGEAISLV 348

Query: 691 DTITKSIQLAIDETTRR---REKQLEHNKKHNINPQS 724
                ++  AI+  TR+   R+ + +   +H   P +
Sbjct: 349 CADEVNMLSAIEMLTRQTLTRKMEPDFEPEHR-VPDT 384


>gi|194745414|ref|XP_001955183.1| GF18634 [Drosophila ananassae]
 gi|190628220|gb|EDV43744.1| GF18634 [Drosophila ananassae]
          Length = 704

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 13/164 (7%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++          +++S       +  +I   ++   +I++ V TKR  +
Sbjct: 477 LELSANHNIRQVVEVCDEFSKEEKLKS-------LLSDIYDTSENPGKIIIFVETKRRVD 529

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L  ++    +R   +H +    ER  ++R+ R GK ++LV  ++   GLD+     V  
Sbjct: 530 NLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVIN 589

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            D     + ++    I  IGR  R+ N+K   +A     + + A
Sbjct: 590 FD-----YPQNSEDYIHRIGRTGRS-NTKGTSFAFFTKNNAKQA 627


>gi|115437436|ref|NP_001043295.1| Os01g0549400 [Oryza sativa Japonica Group]
 gi|143455968|sp|Q5JKF2|RH40_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 40
 gi|57899403|dbj|BAD88050.1| putative ATP-dependent RNA helicase DB10 [Oryza sativa Japonica
           Group]
 gi|113532826|dbj|BAF05209.1| Os01g0549400 [Oryza sativa Japonica Group]
 gi|125570769|gb|EAZ12284.1| hypothetical protein OsJ_02174 [Oryza sativa Japonica Group]
          Length = 792

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 14/187 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           R  T++ +AT         + ++V  +    G VD  V   +    VE +         +
Sbjct: 327 RRQTLMYTATWPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLE 386

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  +   G ++L+   TKRM + L   L  R      +H +    ER +++   R G+ 
Sbjct: 387 QILRSQDSGSKVLIFCTTKRMCDQLARTLT-RQFGASAIHGDKSQSEREKVLSHFRSGRS 445

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDI +  +V   D     F       +  IGR  R   + V       
Sbjct: 446 PILVATDVAARGLDIKDIRVVINYD-----FPTGIEDYVHRIGRTGRAGATGVAYTFFCD 500

Query: 694 TKSIQLA 700
             S   A
Sbjct: 501 QDSKYAA 507


>gi|78042906|ref|YP_359101.1| DEAD-box ATP dependent DNA helicase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995021|gb|ABB13920.1| ATP-dependent RNA helicase, DEAD box family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 430

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 95/230 (41%), Gaps = 32/230 (13%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIR------SARTQVEDVYDE 574
           R  T++ SAT P   +    + +   + ++  G       IR          ++E +   
Sbjct: 174 RQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSI 233

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +N   +  ++ ++   TK+  +++ E L  R    + +H ++   ER + I+  + GK +
Sbjct: 234 LNS--ELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTE 291

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTI 693
           +LV  ++   GLDIP+   V   D       ++  S I  IGR  R     K I   +  
Sbjct: 292 LLVATDVAARGLDIPDVSHVINFD-----IPQNPESYIHRIGRTGRAGREGKAITLINYR 346

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINP----------QSVKEKIMEVI 733
            + +  AI+E   +R K+        I P          + + +KI++ I
Sbjct: 347 ERKLLKAIEEAINKRLKRE-------ILPEPVDLEEARFKKIAKKILDTI 389


>gi|254577069|ref|XP_002494521.1| ZYRO0A03476p [Zygosaccharomyces rouxii]
 gi|238937410|emb|CAR25588.1| ZYRO0A03476p [Zygosaccharomyces rouxii]
          Length = 399

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 88/210 (41%), Gaps = 23/210 (10%)

Query: 515 FEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSA 564
           ++ +  L P    +VVSAT     LE  +  + + +        I   G+    V++   
Sbjct: 190 YDIFARLPPGCQVVVVSATMSRDILEVTKKFMSDPVKILVKRDEISLEGISQYYVDVSKE 249

Query: 565 RTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
             + +   D+YD + +      + ++   T++  + L++ L + N  V  MH ++K  +R
Sbjct: 250 EWKFDTLCDLYDSLTIT-----QCVIFCNTRKKVDWLSKKLIQSNFAVVSMHGDMKQEDR 304

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            +++ D R G   VL+  ++   G+D+ +  LV   D  +        + I  IGR+ R 
Sbjct: 305 DKVMNDFRTGHSRVLISTDVWARGIDVQQISLVINYDMPEI-----MENYIHRIGRSGRF 359

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQ 711
               V +   T   S +L   E     + +
Sbjct: 360 GRKGVAVNFITREDSSKLKATEKMYGIKIK 389


>gi|107027528|ref|YP_625039.1| DEAD/DEAH box helicase-like [Burkholderia cenocepacia AU 1054]
 gi|105896902|gb|ABF80066.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
          Length = 507

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 99/299 (33%), Gaps = 27/299 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLRFEEWNCLRPTTIVVS 529
            +D +     Q   +          + + GF   L +     P +          T++ S
Sbjct: 158 LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAK--------RQTLLFS 209

Query: 530 ATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLR 584
           AT      +   GI+   V+  + P       ++  +     + +       +A  +  R
Sbjct: 210 ATFSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNKPDLFMHLVAQNRWER 269

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V T+   + L   L +    V  +H +     R+  +   + G+  +LV  ++   
Sbjct: 270 ALVFVKTRNGVDYLALMLEKTGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAAR 329

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           GLDI +  LV  +D             +  IGR  R   S V +            AI+ 
Sbjct: 330 GLDIDDLPLVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEA 384

Query: 704 TTR---RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             R   RRE++     +H   P++      E+I             +    + +   KK
Sbjct: 385 LIRQTLRREEEPGFEAEHR-VPET--SATGEIIKKPKKPKKPKVQQAAPVGRQAQPGKK 440


>gi|170748065|ref|YP_001754325.1| transcription-repair coupling factor [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654587|gb|ACB23642.1| transcription-repair coupling factor [Methylobacterium
           radiotolerans JCM 2831]
          Length = 1198

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/316 (14%), Positives = 106/316 (33%), Gaps = 35/316 (11%)

Query: 155 AAIAQLLKGIHSREKVQL---LLGVTGSGKTFTMAKVIEAMQRPAIVM--APNKILAAQL 209
           +A+A+ +  +   +   L     G            +   +  PA+++  A +   +A  
Sbjct: 26  SALARAIDALKRGDSPVLANAPEGFDALALADLARALAPTVDAPAVLVHVARDSGRSAAF 85

Query: 210 YSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLER 269
            +      P   V    ++ D    +   P T     + +++       R + TRS  +R
Sbjct: 86  QAALGFVAPEMDVMSLPAW-DCQPYDRVSPTTAVAAARMTALA------RLARTRSAEDR 138

Query: 270 NDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
              +  +  + +  +      ++      IG+ V   ++++ +    + R       G +
Sbjct: 139 PRILCTTVNALVQRVPPRAHIAKEAFSAAIGNVVAMDDVVAWVEANGFLRTGTVRDTGEY 198

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
            V G  +++ P  L     R+  FG+ +E I  F P T +    + ++ +   S      
Sbjct: 199 AVRGGILDLSPPGL-PAPIRLDFFGDTLESIRAFDPETQRTTGQLRSLDLMPMSEVQLTT 257

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
            T+             R   ++  G      RL + ++              +E++    
Sbjct: 258 ETIRRF----------RQNYIQSFGAATRDDRLYETVS-------EGRRYAGLEHWMPLF 300

Query: 450 TGRNPGEPPPTLFEYI 465
                     TLF+Y+
Sbjct: 301 YDHL-----DTLFDYL 311



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 12/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQ 581
             + +SATP    L+     + E  I  T  VD  V +R+  T  + +   + +     +
Sbjct: 797 HVLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLV-VRTFVTPFDPLTIREALLRERYR 855

Query: 582 GLRILLTVLTKRMAEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +    V       ++ ++L      I+V   H ++   +  +++     GKFDVL+  
Sbjct: 856 GGQSFYVVPRIEDLAEVKKFLDAEMPEIKVAVAHGQMAAGQLEDVMTAFYEGKFDVLLST 915

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + +  AD  G  +    L Q  GR  R   SK   YA   T + + 
Sbjct: 916 TIVESGLDIPTANTLIVHRADMFGLAQ----LYQLRGRVGR---SKARAYALFTTPANRQ 968

Query: 700 AIDETTRRREK 710
              +  +R + 
Sbjct: 969 LTAQAEQRLKV 979



 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 4/121 (3%)

Query: 107 ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS 166
            R+++    L+K        ++ ++         F  +  +  + DQ  AI  +L  +++
Sbjct: 606 RRILEMAGELIKVAAQRFVRKAPALQAPEGLYGEFAARFPFEETEDQANAIDAVLDDLNA 665

Query: 167 REK-VQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
                +L+ G  G GKT    +   A     +   V+ P  +LA Q Y  F   F    V
Sbjct: 666 GRPMDRLVCGDVGFGKTEVALRAAFAAAISGKQVAVIVPTTLLARQHYRTFAERFKGLPV 725

Query: 223 E 223
           +
Sbjct: 726 Q 726


>gi|164658197|ref|XP_001730224.1| hypothetical protein MGL_2606 [Malassezia globosa CBS 7966]
 gi|159104119|gb|EDP43010.1| hypothetical protein MGL_2606 [Malassezia globosa CBS 7966]
          Length = 653

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 12/183 (6%)

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           G  +P  MD + L F       P  I + A      L++   + V ++   +  +   +E
Sbjct: 366 GEDMPGVMDRQTLMFS---ATFPQNIQMLA---KDFLKEYVFLSVGRVGSTSENITQKIE 419

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
               R +   + D +      GL  L+ V TKRMA+ L+++L   NI    +H +    E
Sbjct: 420 YVEDRDKQSMLLDVLAAMPTSGL-TLIFVETKRMADMLSDFLIYSNIAATSIHGDRTQRE 478

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R   +   R G+  +LV   +   GLDIP    V   D             +  IGR  R
Sbjct: 479 REYALDLFRSGRTPILVATAVAARGLDIPNVTHVVNYD-----LPSDIDDYVHRIGRTGR 533

Query: 681 NVN 683
             N
Sbjct: 534 AGN 536


>gi|281203069|gb|EFA77270.1| DEAD/DEAH box helicase domain-containing protein [Polysphondylium
           pallidum PN500]
          Length = 1147

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSAR---TQVED 570
               ++VSAT     +   +  + + +        +   G+    V +         + D
Sbjct: 221 ATQIVLVSATLTQDVINMTEKFMTDPVRILLKRDELTLEGIKQFFVSVEKEEWKFGTLCD 280

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TK+    LT+ + E N  V  MH +++  ER EII+  R 
Sbjct: 281 IYDSLTIT-----QAVIFCNTKQKVNILTDKMREANFTVASMHGDMEQKEREEIIKSFRS 335

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++L  G+D+ +  LV   D         + + I  IGR+ R     V I +
Sbjct: 336 GENRVLITTDILARGIDVQQVSLVINYD-----LPNDRENYIHRIGRSGRFGRKGVAINF 390

Query: 690 ADTITKSIQLAIDE 703
             +    I   I++
Sbjct: 391 VKSSDIRILRDIEQ 404


>gi|170099095|ref|XP_001880766.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644291|gb|EDR08541.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 498

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 86/208 (41%), Gaps = 20/208 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T++ SAT      +     + + I    G ++          VE+ S   +   +   +
Sbjct: 241 QTLMFSATWPKDVQKLANDFLRDMIQVNIGSMELTANHNIQQIVEVCSDFEKRNKLIKHL 300

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +  + +  ++L+ V TKR+A+D+T+YL +       +H + +  ER  ++ + + G+  +
Sbjct: 301 DQISAENAKVLIFVATKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLGEFKAGRSPI 360

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   GLD+ + G V   D     F  +    I  IGR  R    K I Y    T 
Sbjct: 361 LIATDVASRGLDVKDVGYVINYD-----FPNNCEDYIHRIGRTGRAG-MKGISYTYFTTD 414

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQ 723
           + + A      R    +    K  + PQ
Sbjct: 415 NAKSA------RELIGILREAKATVPPQ 436


>gi|225012067|ref|ZP_03702504.1| transcription-repair coupling factor [Flavobacteria bacterium
           MS024-2A]
 gi|225003622|gb|EEG41595.1| transcription-repair coupling factor [Flavobacteria bacterium
           MS024-2A]
          Length = 1064

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 74/201 (36%), Gaps = 12/201 (5%)

Query: 198 VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR 257
           ++  N   AA   ++ +     + V YF + Y              Y ++ +     + R
Sbjct: 1   MILDNAEQAAYYLNDLERLLKPSDVLYFPASY-----------RQAYAQETTDNANVLLR 49

Query: 258 MRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
                  S  ++   I+    +    I S  +  ++  ++     +    +  SL +  +
Sbjct: 50  SEVLKKISGSKKPRIIISYPQAVFEKIISQNTLKRITFKIIKDTILSLNFINESLFEMGF 109

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R D     G F V G  I++F S      +R+  F + +E +  F   T + I   ++I
Sbjct: 110 QRVDFVTSPGEFAVRGGIIDVF-SFAYQHPYRIEFFDDTVERLCSFDVQTQRSITAFDSI 168

Query: 378 KIYANSHYVTPRPTLNTAMKY 398
           ++  ++          + +++
Sbjct: 169 ELLPDTSNNDFTDKRKSILEF 189



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 67/179 (37%), Gaps = 13/179 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQ 580
            + ++ATP    L+       +  +I        P+E   +R + T + D    I    Q
Sbjct: 648 VLTLTATPIPRTLQFSLMAARDLSVIATPPPNRFPIESDVVRFSETLIRD---GIMYELQ 704

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G ++           +++  +       R    H +++  +  + +     G FD+L+ 
Sbjct: 705 RGGQVFFIHNRVENIAEISGLVQRLVPDARIAIGHGQMEGTKLEKTLLSFMQGDFDILIA 764

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++  GLD+P    + I +A+  G     + L Q  GR  R+       +      ++
Sbjct: 765 TTIIENGLDVPNANTIFINNANNFGL----SDLHQMRGRVGRSNKKAFCYFITPPHSAM 819



 Score = 41.2 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        AA    ++++ V T     +  +  +  L E  +RV Y++    T ++
Sbjct: 530 GKTEVAIRAAFKAADNSKQVVVLVPTTILAFQHFKTFSARLKELPVRVDYLNRFRSTKDK 589

Query: 622 IEIIRDLRLGKFDVLVGI-NLLREGLDIPECGLVAILDADKEG 663
            +I++DL  GK D+L+G   L+ + +   + GL+ + +  K G
Sbjct: 590 NQILQDLSEGKIDILIGTHQLVNKNVVFKDLGLLIVDEEQKFG 632


>gi|170750777|ref|YP_001757037.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657299|gb|ACB26354.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 1109

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 57/301 (18%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P + +A +      L +  +   P   V  +  + D    +   P   T   + + +   
Sbjct: 38  PVVHVARDARRLEDLAATLRALEPDARVAVYPEW-DCLPFDHASPSRATMGARAAVMRWL 96

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
            DR             D ++ ++ + +  +   E+++   V L++GD ++     + L +
Sbjct: 97  TDRDALP---------DFVLTTAPALVQRVPPPETWASARVTLRVGDPLDVAAATADLKR 147

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y   +     G   V G ++E+FP+       R+      +  I  + P++ + +   
Sbjct: 148 LGYILDERVDEPGEIAVRGRTVEVFPA-AAPRPCRIEHAEGRVTAIRSYDPISQRSVAEA 206

Query: 375 ETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           + + I   +  +    +  +   +                                    
Sbjct: 207 DELVIDPATEIILEPGSGQSFEPF------------------------------------ 230

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            TG    ++ Y   L          TL +Y+PE  L   D +   I            R 
Sbjct: 231 -TGQEHRLDRYYPRL---------VTLLDYVPEARLAVEDGTQARIDAFFEQMDEARGRM 280

Query: 495 A 495
            
Sbjct: 281 K 281



 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 8/140 (5%)

Query: 103 VQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLK 162
           ++A A + ++   +L+  +      +  +   + ++  F     + P+ DQ AA+  L+ 
Sbjct: 528 LEAEATMARTARLMLEAARARRETEAPVLAPPASEMERFAAGFGFAPTPDQAAAVDALMA 587

Query: 163 GIHSREK-VQLLLGVTGSGKT-----FTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
            + S     +L+ G  G GKT        A +     R A ++AP  +LA Q     +  
Sbjct: 588 DLASGRPMDRLVCGDVGFGKTEVALRALAAAIFS--GRQAALIAPTTVLARQHAETLRRR 645

Query: 217 FPHNAVEYFVSYYDYYQPEA 236
           F    VE           EA
Sbjct: 646 FGRFGVEVAQLSRLVAPAEA 665



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 7/149 (4%)

Query: 523 PTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
              + ++ATP    L+    G+    ++     +  PV    A    E V + +    ++
Sbjct: 722 GHVLTLTATPIPRTLQAALVGLQSLSVLATPPALRQPVRTVVAPFDAEAVREALIREHRR 781

Query: 582 GLRILLTVLTKR----MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           G +  +          MAE L   +   +I V   H ++K     E++     G  DVL+
Sbjct: 782 GGQSFVVCPRIEDIAPMAERLRALVPGLDILVA--HGDLKPSAMDEVMVRFAEGDGDVLL 839

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLR 666
              ++  GLD+P    + + +A + G  +
Sbjct: 840 ATAIVESGLDVPRANTMLVWEAARFGLAQ 868


>gi|324502652|gb|ADY41165.1| ATP-dependent RNA helicase an3 [Ascaris suum]
          Length = 656

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 7/134 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + + ++  A +GL  L+ V TKR A DL  +L   N  V  +H ++K  ER   +   R 
Sbjct: 357 LMELLDADANKGL-TLVFVETKRGANDLAWFLQRNNYNVVPIHGDLKQFERERHLEMFRT 415

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G+ +VLV   +   GLDIP    V   D             +  IGR  R  N      +
Sbjct: 416 GEANVLVATAVAARGLDIPNVKHVINFD-----LPSDIDEYVHRIGRTGRVGNVGQATSF 470

Query: 690 ADTITKSIQLAIDE 703
            +   +++   + E
Sbjct: 471 FNDKNRNLGRDLAE 484


>gi|298704856|emb|CBJ28373.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 519

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 78/209 (37%), Gaps = 23/209 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E++      +    + T           +   +E      +   +   
Sbjct: 306 QTLMWSAT-WPKEVQALARDFLHHYYQVTVGSLELAANKDIKQIIECTEDFNKYRSLSKH 364

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +      G ++L+ V TK+  + LT  L +   + R +H +    ER  +++D + G F 
Sbjct: 365 LQQHGHNG-KVLVFVETKKGCDALTRSLRQDGYQARCIHGDKTQEERDYVLKDFKGGNFQ 423

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   GLD+ +  +V   D     F  +    I  IGR  R     V +      
Sbjct: 424 VLVATDVAARGLDVKDIQMVINFD-----FPNNMEDYIHRIGRCGRAGAKGVAVSFFGSK 478

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            S          R   ++    ++++ P+
Sbjct: 479 NSRNG-------RELIKILTESENHVPPE 500


>gi|218505708|ref|NP_001136206.1| predicted gene, EG668137 [Mus musculus]
          Length = 411

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               ++VSAT     LE     +   I        +   G+    V +     + +   D
Sbjct: 211 ATQVVLVSATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 270

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++  +TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 271 LYDTLTIT-----QAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 325

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 326 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 380

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 381 VKNDDIRILRDIEQ 394


>gi|9955400|dbj|BAB12216.1| vasa homolog [Ciona savignyi]
          Length = 688

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 68/186 (36%), Gaps = 15/186 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT            + E  +  T          +    +++     +   + + 
Sbjct: 419 HTLMFSATFPDEIQRLAHDFLREDFLFLTVGRVGGACTDVTQSIIQV-DQDDKRAKLLEL 477

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I+  A+   R L+ V TKR A+ L   L +       +H +    ER + +RD +     
Sbjct: 478 ISDVAETRSRTLVFVETKRGADFLACMLSQEGCPTTSIHGDRLQQEREQALRDFKSAVCP 537

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+  ++   GLDIP+   V   D  KE         +  IGR  R  N           
Sbjct: 538 ILIATSVAARGLDIPKVEHVINYDMPKE-----IDEYVHRIGRTGRCGNLGRATTFYDNN 592

Query: 695 KSIQLA 700
           K  +LA
Sbjct: 593 KDGELA 598


>gi|9955402|dbj|BAB12217.1| vasa homolog [Ciona savignyi]
          Length = 770

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 68/186 (36%), Gaps = 15/186 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT            + E  +  T          +    +++     +   + + 
Sbjct: 501 HTLMFSATFPDEIQRLAHDFLREDFLFLTVGRVGGACTDVTQSIIQV-DQDDKRAKLLEL 559

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I+  A+   R L+ V TKR A+ L   L +       +H +    ER + +RD +     
Sbjct: 560 ISDVAETRSRTLVFVETKRGADFLACMLSQEGCPTTSIHGDRLQQEREQALRDFKSAVCP 619

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+  ++   GLDIP+   V   D  KE         +  IGR  R  N           
Sbjct: 620 ILIATSVAARGLDIPKVEHVINYDMPKE-----IDEYVHRIGRTGRCGNLGRATTFYDNN 674

Query: 695 KSIQLA 700
           K  +LA
Sbjct: 675 KDGELA 680


>gi|283779708|ref|YP_003370463.1| transcription-repair coupling factor [Pirellula staleyi DSM 6068]
 gi|283438161|gb|ADB16603.1| transcription-repair coupling factor [Pirellula staleyi DSM 6068]
          Length = 1087

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 154 PAAIAQLLKGIH-----SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQ 208
           P  IAQL          SR +   + GV GS      A +  A   P I + P +  A  
Sbjct: 19  PGRIAQLAGFAEVVAAMSRHEPATIDGVWGSSCALLAAALASADNSPVIAVLPTQREADD 78

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L  +    F    +    S+       A + R D +  +  ++ E +    +   R+   
Sbjct: 79  LAIDIA-LFRSQGILPLPSFESAI--VAELGRDDAFGPRLRTLKELLVARENP--RAAAT 133

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
               +V S  S +  +   E  +    +++  +S+E    L  LV+  Y+      + G 
Sbjct: 134 LQQLVVTSIHSLLQPMPQREVLAASSRRVRKQESLEIDPFLRWLVEHGYEATTSVQLPGE 193

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375
           F   G  I++F +H      R+ +F +++E I +F   T + +  ++
Sbjct: 194 FCHRGGIIDLF-AHDWQRPARIELFDDEVESIRQFDVATQRSLGALD 239



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 73/203 (35%), Gaps = 21/203 (10%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVE----DVYDEINLAA 579
            + +SATP    L           +R    ++ P E R    T V+    D+     L  
Sbjct: 703 VLTLSATPIPRTLHMSLVG-----VRDISNLESPPEDRVPVETSVKRWNNDLIRTAVLRE 757

Query: 580 -QQGLRILLTVLTKRMAEDLTEYLYERNIRV--RYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +G +I          E +   L +       R  H ++   E  +++ D   GKFD+L
Sbjct: 758 LNRGGQIYFVHNRVNDIEIIARRLNQIVPEASLRIGHGQMNETELEQVMVDFVAGKFDLL 817

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +   ++  GLDIP    + I +A++ G       L Q  GR  R  N           KS
Sbjct: 818 LATTIVESGLDIPNANTIFINEAERYGL----ADLHQLRGRVGRYKNRAHCYLLIDSNKS 873

Query: 697 IQLAIDETTRRREKQLEHNKKHN 719
               I     RR + +E   +  
Sbjct: 874 ----ITPNAARRLRAIEEFSEMG 892


>gi|156720287|dbj|BAF76796.1| Vasa-related protein [Enchytraeus japonensis]
          Length = 990

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 93/239 (38%), Gaps = 30/239 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK--ATLAEYGFRLPSCMDNRPLR 514
            P  L ++  +  +      ++ + ++  M    FH    + L++    +PS  +     
Sbjct: 652 TPGRLIDFFGKKRINLCKLKYLVLDEVDRMLDMGFHTAIASILSQGESGMPSVNNR---- 707

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVE----IRSART 566
                     T+V SAT      +    ++ E  I  T    G  +  +E    +     
Sbjct: 708 ---------QTVVFSATIPEEVQKLAAKLLREDYIFITVGCIGSANLDIEQYVLLMEQEN 758

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + + + +    +   +I+++V  KRMA+ ++ +L + +     +H  +   ER + +R
Sbjct: 759 KRDKLLEIVQKRGED--KIIVSVEEKRMADFISAFLSQASFPTASIHGNLTQQEREKALR 816

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           D R G   +LV  N+   GLDIPE   V   D             +  IGR  R  N+ 
Sbjct: 817 DFRSGVSPILVATNVAARGLDIPEVKHVINYD-----MPPHIEEYVHRIGRPGRCGNTG 870


>gi|117924939|ref|YP_865556.1| DEAD/DEAH box helicase [Magnetococcus sp. MC-1]
 gi|117608695|gb|ABK44150.1| DEAD/DEAH box helicase domain protein [Magnetococcus sp. MC-1]
          Length = 439

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/266 (22%), Positives = 93/266 (34%), Gaps = 46/266 (17%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         + E HV + QI      +  R     + GF      D R  R  
Sbjct: 132 TPGRLLD--------LMGERHVRLDQIQVFVLDEADRM---LDMGFI----HDIR--RII 174

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           +    +  T++ SAT      E  +G++              VE+    T VE +  ++ 
Sbjct: 175 KVIPAKRHTLLFSATMPKDIAELAEGLL---------TNPAKVEVTPESTTVERITQKVL 225

Query: 577 LAAQQGLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
              +Q  R              +L+   TK  A  + EYL +  I    +H       R 
Sbjct: 226 FVDKQNKRSLLKNVLEHESIEQVLVFTRTKHGANRVAEYLDKHRIASAAIHGNKSQSARE 285

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           + +   R GK  VLV  ++   G+D+     V   D   E       S +  IGR AR  
Sbjct: 286 KALDGFRKGKLKVLVATDIAARGIDVAGISHVINFDLPNES-----ESYVHRIGRTARAG 340

Query: 683 NSK-VILYADTITKSIQLAIDETTRR 707
                I + D   +   L I++T R+
Sbjct: 341 RDGNAISFCDAEERGYLLDIEKTIRQ 366


>gi|304434516|dbj|BAJ15435.1| VASA-like gene [Mytilus galloprovincialis]
          Length = 745

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 20/189 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E+++     +   +  T          +     E+     + + + D 
Sbjct: 486 QTLMFSAT-FPEEIQRLAAEFLNDYLFLTVGRVGGACTDVAQYVHEV-PRDQKRQKLCDI 543

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++ +     + L+ V  KR A+ L  YL +       +H +    ER E +RD + G+  
Sbjct: 544 LSESGTD--KTLVFVEQKRNADFLATYLSQSGFPTTSIHGDRLQQEREEALRDFKTGRAP 601

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADT 692
           +LV  ++   GLDIP    V   D       +S    +  IGR  R  N       Y D 
Sbjct: 602 ILVATSVAARGLDIPLVKHVINYD-----LPQSIDEYVHRIGRTGRCGNVGKSTSFYTDD 656

Query: 693 ITKSIQLAI 701
               I  A+
Sbjct: 657 SDGGIAKAL 665


>gi|269218758|ref|ZP_06162612.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211869|gb|EEZ78209.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 531

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 73/189 (38%), Gaps = 16/189 (8%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--------DVYDE 574
            T++ SAT PG       + +     IR     D  V ++S R  V         +V   
Sbjct: 223 HTMLFSATMPGPVVAMARRYMSRPTHIRAADPSDTGVTVKSVRQVVYRCHALNKSEVLAR 282

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I  A  +GL  ++   TKR A  L E L ER      +H ++    R + +R  R GK D
Sbjct: 283 ILQAKGRGL-TIVFTRTKRTAARLAEELTERGFAAGALHGDLGQGAREQALRAFRNGKVD 341

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           VLV  ++   G+D+ +   V             + + I  IGR  R   S   + + D  
Sbjct: 342 VLVATDVAARGIDVDDVTHVINYQC-----PEDEKTYIHRIGRTGRAGQSGTAVTFVDWD 396

Query: 694 TKSIQLAID 702
                  ID
Sbjct: 397 DLPRWTLID 405


>gi|117919870|ref|YP_869062.1| 4a-hydroxytetrahydrobiopterin dehydratase [Shewanella sp. ANA-3]
 gi|117612202|gb|ABK47656.1| 4a-hydroxytetrahydrobiopterin dehydratase [Shewanella sp. ANA-3]
          Length = 427

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 88/263 (33%), Gaps = 34/263 (12%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPT--GLVDPPVEIRSARTQVEDVYDEINLAA 579
           +  T++ SAT    E+      ++ Q +        +  +E R      E     +    
Sbjct: 190 KKQTLLYSAT-FPEEVRALTAKLLHQPLEYHLQSEQESTIEQRVITVNREQKTALLAHLI 248

Query: 580 QQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +Q    + L+ V  K     L + L +R I     H +     R  ++   + G+  VL+
Sbjct: 249 KQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKSGEISVLI 308

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   G+DI +  +V   D       RS    +  IGR+ R   + + +   +  +  
Sbjct: 309 ATDIAARGIDIDKLPVVINFD-----LPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYH 363

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
              + E            KK+ I      + + E I            +    +  +  +
Sbjct: 364 HFGVIE------------KKNKI------KLVREQIPGFEANAEMPLEVLAQEKPQAKPE 405

Query: 758 KKGKAHLKSLRKQMHLAADNLNF 780
             GK   K L       A NL F
Sbjct: 406 GTGKKKRKQL------PAANLEF 422


>gi|114046940|ref|YP_737490.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113888382|gb|ABI42433.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 427

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 88/263 (33%), Gaps = 34/263 (12%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPT--GLVDPPVEIRSARTQVEDVYDEINLAA 579
           +  T++ SAT    E+      ++ Q +        +  +E R      E     +    
Sbjct: 190 KKQTLLYSAT-FPEEVRALTAKLLHQPLEYHLQSEQESTIEQRVITVNREQKTALLAHLI 248

Query: 580 QQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +Q    + L+ V  K     L + L +R I     H +     R  ++   + G+  VL+
Sbjct: 249 KQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKSGEISVLI 308

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   G+DI +  +V   D       RS    +  IGR+ R   + + +   +  +  
Sbjct: 309 ATDIAARGIDIDKLPVVINFD-----LPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYH 363

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
              + E            KK+ I      + + E I            +    +  +  +
Sbjct: 364 HFGVIE------------KKNKI------KLVREQIPGFEANAEMPLEVLAQEKPQAKPE 405

Query: 758 KKGKAHLKSLRKQMHLAADNLNF 780
             GK   K L       A NL F
Sbjct: 406 GTGKKKRKQL------PAANLEF 422


>gi|225463591|ref|XP_002271334.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 587

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 94/260 (36%), Gaps = 28/260 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      D+    F+ +   R  T++ SAT  +      +  +V+ +    G  
Sbjct: 309 RLVDLGFE-----DDIREVFDHFKAQR-QTLLFSATMPTKIQNFARSALVKPVTVNVGRA 362

Query: 555 ----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + Q   +   +    +    +L+    K   +D+ EYL  + +   
Sbjct: 363 GAANLDVIQEVEYVK-QEAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAV 421

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER   I   + GK DVLV  ++  +GLD P+   V   D   E       +
Sbjct: 422 AIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIKHVINYDMPAE-----IEN 476

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
            +  IGR  R   + +        +S    +D       K L    K  I P      + 
Sbjct: 477 YVHRIGRTGRCGKTGIATTFINKNQSETTLLD------LKHLLQEAKQRIPPV-----LA 525

Query: 731 EVIDPILLEDAATTNISIDA 750
           E+ DP+   DA T    +  
Sbjct: 526 ELNDPMEDVDAITDASGVKG 545


>gi|329769499|ref|ZP_08260909.1| hypothetical protein HMPREF0433_00673 [Gemella sanguinis M325]
 gi|328838714|gb|EGF88312.1| hypothetical protein HMPREF0433_00673 [Gemella sanguinis M325]
          Length = 512

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 19/194 (9%)

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-------EDVYDEINLA 578
           + +SATP   +++     I++  IR  G + P   IR    +V       E +   I+  
Sbjct: 312 VFLSATPSK-KIKSYVDDIIKIPIRYHGYLLPVPRIRKVNKKVLIFEEKSEIMNKYISEI 370

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYE---RNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             +  R L+ V    M + L  YL +    +I++ Y++SE K  +R + I+     K D+
Sbjct: 371 INKKRRFLVFVPVIAMCQSLKNYLEKYISESIKIDYVYSEDK--DRSDKIQRFYNYKIDI 428

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV---NSKVILYADT 692
           L+   +L  G+       V + DA  + F  +K SLIQ  GR  R       ++I ++D 
Sbjct: 429 LITTTILERGVTFDHLD-VMVFDAGHKNF--TKESLIQIAGRVGRKEYDNTGEIIYFSDE 485

Query: 693 ITKSIQLAIDETTR 706
           ITK+I+ AI E   
Sbjct: 486 ITKNIKHAIKEIEY 499


>gi|91179150|gb|ABE27759.1| vasa [Chlamys farreri]
          Length = 801

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 12/173 (6%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSARTQVEDVYD 573
                 T++ SAT    E+++  G  +   +     R  G      +      + +    
Sbjct: 535 EKTERQTLMFSAT-FPEEIQKLAGDFLNDYLFLTVGRVGGACSDVTQHFFQVDRQQKRQK 593

Query: 574 EINLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             ++ ++ G  + L+ V  KR A+ L  YL E       +H +    ER E +RD + GK
Sbjct: 594 LCDILSESGADKTLVFVEQKRNADFLASYLSESGFPTTSIHGDRLQREREEALRDFKQGK 653

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             +L+  ++   GLDIP    V   D       +S    +  IGR  R  N  
Sbjct: 654 APILIATSVAARGLDIPNVKHVINYD-----LPQSIDEYVHRIGRTGRCGNLG 701


>gi|134034090|sp|P0C2M6|DED1_EMENI RecName: Full=ATP-dependent RNA helicase ded1
 gi|259482717|tpe|CBF77461.1| TPA: ATP-dependent RNA helicase ded1 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:P0C2M6] [Aspergillus
           nidulans FGSC A4]
          Length = 668

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 13/172 (7%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   +      L+    + V ++   +  +   VE      +   + D ++
Sbjct: 382 QTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILH 441

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                GL  L+ V TKRMA+ L+E+L  +      +H +    ER   +   R G++ +L
Sbjct: 442 THGTTGL-TLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPIL 500

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V   +   GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 501 VATAVAARGLDIPNVTHVINYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 547


>gi|312963192|ref|ZP_07777677.1| ATP-dependent RNA helicase [Pseudomonas fluorescens WH6]
 gi|311282703|gb|EFQ61299.1| ATP-dependent RNA helicase [Pseudomonas fluorescens WH6]
          Length = 444

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 93/277 (33%), Gaps = 32/277 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   +++L         + Q+  +   +  R     + GF        R L   
Sbjct: 131 TPGRLIDLFRQNAL--------KLNQLQTLVLDEADRM---LDLGFSEELANIYRMLP-- 177

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVEDV 571
                +  T++ SAT           ++ + +   + P  +    V+  +     + +  
Sbjct: 178 ----KKRQTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKAE 233

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                +   +  ++L+   T+   + L + L    I    +H +     R   +   +  
Sbjct: 234 LFVHLMRKGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKAS 293

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYA 690
           +  +LV  ++   GLDI +  LV   D             I  IGR  R  N+   I   
Sbjct: 294 EVQILVATDVAARGLDIEDLPLVVNFDLPIV-----AEDYIHRIGRTGRAGNTGEAISLV 348

Query: 691 DTITKSIQLAIDETTRR---REKQLEHNKKHNINPQS 724
                ++  AI+  TR+   R  + +   +H   P +
Sbjct: 349 CADEVNMLSAIEMLTRQTLTRNMEQDFEPEHR-VPDT 384


>gi|256860908|gb|ACV32356.1| vasa [Scomber japonicus]
          Length = 643

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V   S R Q+ D+     +      R ++ V TKR A+ +  +L +  +    +H + +
Sbjct: 441 QVTKFSKREQLLDLLKTTGM-----ERTMVFVETKRQADFIATFLCQEKVPTTSIHGDRE 495

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + + D R GK  V+V  ++   GLDIP+   V   D        +    +  IGR
Sbjct: 496 QREREQALADFRSGKCPVMVATSVAARGLDIPDVQHVVNFD-----LPNNIDEYVHRIGR 550

Query: 678 AARNVNSK-VILYADTITKS 696
             R  N+   + + D    S
Sbjct: 551 TGRCGNTGRAVSFYDPDGDS 570


>gi|195399942|ref|XP_002058578.1| GJ14499 [Drosophila virilis]
 gi|194142138|gb|EDW58546.1| GJ14499 [Drosophila virilis]
          Length = 733

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 13/164 (7%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++                 +++ +  +I   ++   +I++ V TKR  +
Sbjct: 493 LELSANHNIRQVVDVCDEFSKE-------DKLKSLLSDIYDTSENPGKIIIFVETKRRVD 545

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L  ++    +R   +H +    ER  ++R+ R GK ++LV  ++   GLD+     V  
Sbjct: 546 NLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVIN 605

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            D     + ++    I  IGR  R+ N+K   +A     + + A
Sbjct: 606 FD-----YPQNSEDYIHRIGRTGRS-NTKGTSFAFFTKNNAKQA 643


>gi|271969585|ref|YP_003343781.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021]
 gi|270512760|gb|ACZ91038.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021]
          Length = 697

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 86/242 (35%), Gaps = 30/242 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         V + H+ + QI  +   +  R     + GF LP       L  E
Sbjct: 167 TPGRLLD--------LVKQKHLDLGQIDVLVLDEADRM---LDLGF-LPDIERIIKLIPE 214

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE------D 570
                +  T++ SAT     +   +  +           D   E     TQ        D
Sbjct: 215 -----KRQTMLFSATLPGEIVALSRRYLTRPTHVRAENNDAEAEATPQTTQFVWRAHRMD 269

Query: 571 VYDEINLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             + +    Q   R   ++   TKR  + + E L ER      +H ++   +R + +R  
Sbjct: 270 KIEIVGRLLQCDGRGLTMIFCETKRACDMVVEQLKERGFAAAAVHGDLGQGQREQALRAF 329

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R GK DVLV  ++   G+D+ +   V   D       + + + +  IGR  R   + V +
Sbjct: 330 RNGKIDVLVATDVAARGIDVDDVTHVVNYDC-----PQDEKAYVHRIGRTGRAGKTGVAV 384

Query: 689 YA 690
             
Sbjct: 385 TF 386


>gi|19075533|ref|NP_588033.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces pombe 972h-]
 gi|21542025|sp|O13370|DED1_SCHPO RecName: Full=ATP-dependent RNA helicase ded1; AltName:
           Full=Multicopy suppressor of overexpressed cyr1 protein
           2
 gi|2558968|gb|AAC04893.1| suppressor of uncontrolled mitosis [Schizosaccharomyces pombe]
 gi|3080516|emb|CAA18646.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces pombe]
 gi|3514095|gb|AAC34121.1| putative DEAD box RNA helicase Dep1 [Schizosaccharomyces pombe]
 gi|4582232|emb|CAB40192.1| putative RNA helicase [Schizosaccharomyces pombe]
          Length = 636

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 16/189 (8%)

Query: 524 TTIVVSAT-PGSWEL---EQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT P   +L   +  +  +   + R       +    V +  +  +   + D +
Sbjct: 366 QTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEKRSY-LLDIL 424

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +    +GL  L+ V TKRMA+ LT+YL   N     +H +    ER   +   R G+  +
Sbjct: 425 HTLPPEGL-TLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSI 483

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           +V   +   GLDIP    V   D             +  IGR  R  N+   + + +   
Sbjct: 484 MVATAVASRGLDIPNVTHVINYD-----LPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNN 538

Query: 695 KSIQLAIDE 703
           K I   + E
Sbjct: 539 KGIAKELIE 547


>gi|221112031|ref|XP_002166522.1| PREDICTED: similar to Eukaryotic initiation factor 4A-III [Hydra
           magnipapillata]
          Length = 509

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               ++VSAT     LE  Q  + + I        +   G+    V +     + E   D
Sbjct: 309 ATQVVLVSATLPHEILEMTQKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFETLCD 368

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 369 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMRESNFTVVSMHGDMPQKERDSIMKEFRS 423

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  LV   D        ++   I  IGR+ R     V I +
Sbjct: 424 GSSRVLISTDVWSRGLDVPQVSLVINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 478

Query: 690 ADTITKSIQLAIDE 703
             +    +   I++
Sbjct: 479 VKSDDIRVLRDIEQ 492


>gi|145629309|ref|ZP_01785108.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21]
 gi|144978812|gb|EDJ88535.1| excinuclease ABC subunit B [Haemophilus influenzae 22.1-21]
          Length = 98

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/68 (50%), Positives = 46/68 (67%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPA 196
           +   F + +D+ PSGDQP AI +L + +      Q LLGVTGSGKTFT+A VI  + RPA
Sbjct: 6   NTKPFILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPA 65

Query: 197 IVMAPNKI 204
           +++APNK 
Sbjct: 66  MLLAPNKN 73


>gi|288574800|ref|ZP_06393157.1| transcription-repair coupling factor [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570541|gb|EFC92098.1| transcription-repair coupling factor [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 1014

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 74/208 (35%), Gaps = 20/208 (9%)

Query: 181 KTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
           K    A +         V+ P++  A   YS+ K    H  +                  
Sbjct: 16  KGAVRAWICRERSSRLTVLLPDENQAEDFYSDAKILLSHEKIFRLP-------------- 61

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIG 300
            D  +EK    +      R    R   E    ++ +      G+ S    S+ ++ L+IG
Sbjct: 62  -DIPLEKGIVDDPASMVARGHVLRKWSEEGGILISTPG----GMMSPFMNSEGLLSLRIG 116

Query: 301 DSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEI 360
           +   +  L+S L    Y R D+    G + V G  +++F      +  RV  F ++IEE+
Sbjct: 117 ECAGRDRLISWLDSSGYSRSDLVWKPGEYAVRGGIVDLFDP-SSRMPLRVVFFDDEIEEM 175

Query: 361 SEFYPLTGQKIRNVETIKIYANSHYVTP 388
             F P        VE   ++     VTP
Sbjct: 176 RLFSPEDQTSKCKVEAFSVWELGDRVTP 203



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 72/196 (36%), Gaps = 15/196 (7%)

Query: 516 EEWNCLRP--TTIVVSATPGS--WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED- 570
           E +  LR     + +SATP    + +       V  I  P G     + +       +D 
Sbjct: 627 ERFRKLRSGVDVLTLSATPIPRTFSMAMKGMRDVSIIETPPGNRPAIITV---TGAWDDG 683

Query: 571 -VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRD 627
            V   +     +G ++ +        E+   ++  R  ++RV + H  ++  E  E +  
Sbjct: 684 LVRKALAREMARGGQVYMLHNRVGTIEERAGWVKSRFPDVRVAFAHGRMRENELEETMMA 743

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G+ D+LV   ++  GLD+     + + D+   G  +    + Q  GR  R  ++   
Sbjct: 744 FYDGEIDILVCTTIVESGLDVGRANTLVVDDSRLLGLAQ----MHQLRGRVGRRDDTAYA 799

Query: 688 LYADTITKSIQLAIDE 703
            +       +  +  E
Sbjct: 800 FFLYPSDCVLPHSTAE 815


>gi|86211175|gb|ABC87271.1| vasa-like protein [Macrobrachium rosenbergii]
          Length = 710

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 11/144 (7%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V   S R Q+ D    I        R ++ V TKR A+ +  +L +  +    +H + +
Sbjct: 511 QVTKYSKREQLLDFLKTIG-----NERTMVFVETKRQADFIATFLCQEELPTTSIHGDRE 565

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + + D + GK  +LV  ++   GLDIPE   V   D  K     +    +  IGR
Sbjct: 566 QREREQALADFKAGKCPILVATSVAARGLDIPEVQHVVNFDLPK-----NIDEYVHRIGR 620

Query: 678 AARNVN-SKVILYADTITKSIQLA 700
             R  N  + + + D    S   A
Sbjct: 621 TGRCGNIGRAVSFYDPEVDSQLAA 644


>gi|2992158|dbj|BAA25324.1| Moc2 RNA helicase [Schizosaccharomyces pombe]
          Length = 636

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 16/189 (8%)

Query: 524 TTIVVSAT-PGSWEL---EQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT P   +L   +  +  +   + R       +    V +  +  +   + D +
Sbjct: 366 QTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEKRSY-LLDIL 424

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +    +GL  L+ V TKRMA+ LT+YL   N     +H +    ER   +   R G+  +
Sbjct: 425 HTLPPEGL-TLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSI 483

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           +V   +   GLDIP    V   D             +  IGR  R  N+   + + +   
Sbjct: 484 MVATAVASRGLDIPNVTHVINYD-----LPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNN 538

Query: 695 KSIQLAIDE 703
           K I   + E
Sbjct: 539 KGIAKELIE 547


>gi|255575815|ref|XP_002528806.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223531759|gb|EEF33579.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 500

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 83/223 (37%), Gaps = 23/223 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      D+    F+ +   R  T++ SAT  +      +  +V+ +    G  
Sbjct: 222 RLVDLGFE-----DDIREVFDHFKAQR-QTLLFSATMPTKIQNFARSALVKPVTVNVGRA 275

Query: 555 ----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + Q   +   +    +    +L+    K   +D+ EYL  + +   
Sbjct: 276 GAANLDVIQEVEYVK-QEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAV 334

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER   I   + GK DVLV  ++  +GLD P+   V   D   E       +
Sbjct: 335 AIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE-----IEN 389

Query: 671 LIQTIGRAARNVNSKVILYADTITKS------IQLAIDETTRR 707
            +  IGR  R   + +        +S      ++  + E  +R
Sbjct: 390 YVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQR 432


>gi|303327133|ref|ZP_07357575.1| transcription-repair coupling factor [Desulfovibrio sp. 3_1_syn3]
 gi|302863121|gb|EFL86053.1| transcription-repair coupling factor [Desulfovibrio sp. 3_1_syn3]
          Length = 1146

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 82/219 (37%), Gaps = 30/219 (13%)

Query: 259 RHSATRSLLER-NDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           R +A  +L +    C+VV   S +     +  +    + L  G     + +L   V+  Y
Sbjct: 97  RMAALYALAQGGPRCVVVGVESVLLRYMPLHFFDSRSLGLSRGGEYSPELILDQAVEWGY 156

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R  +    G     GD ++IFP        R+  FG+ IEE+  F   + + +R ++ +
Sbjct: 157 ERVSLVTRPGDMARRGDILDIFPPGYA-KPVRLEFFGDAIEEMRLFDAESQRSLRPLDEL 215

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +   S     +  L  A        + R  +L  EG      R+ +   Y  +     G
Sbjct: 216 TLLPVSPLALDKNGLAAA--------RKRCDQLFSEG------RINENECYSFKKTLDGG 261

Query: 438 SCQSIENYSRYLTGRNPG---EPPPTLFEYIPEDSLLFV 473
                        G  PG   + P  L E++P DSL  +
Sbjct: 262 G-----------AGILPGVLCDSPSLLEEWLPADSLWLL 289



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 15/189 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---ED--VYDEINLAA 579
            + ++ATP    L+     I E  I  T   D     +   T V   +D  +   I    
Sbjct: 754 VLTLTATPIPRTLQLSMSGIRELSIIETAPQDR----KPVATAVLRRDDAVLSKVIEREI 809

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
           ++  ++       +  E + EY+ +   + R    H ++   E    +     G+ DVLV
Sbjct: 810 EREGQVFWVYNRVQGLERVVEYVRKLAPQARVGMAHGQMSETELETTMHKFWHGELDVLV 869

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             +++  GLD P    + +  A   G  +    L Q  GR  R+       +     + +
Sbjct: 870 CTSIVESGLDFPRANTLVVDQAQMFGLGQ----LYQLRGRVGRSDRQAYAFFVVPDAERL 925

Query: 698 QLAIDETTR 706
               +E  R
Sbjct: 926 TAVAEERLR 934


>gi|260885484|ref|ZP_05735117.2| transcription-repair coupling factor [Prevotella tannerae ATCC
           51259]
 gi|260852468|gb|EEX72337.1| transcription-repair coupling factor [Prevotella tannerae ATCC
           51259]
          Length = 1143

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 84/248 (33%), Gaps = 36/248 (14%)

Query: 196 AIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI 255
            + +A ++  A   Y +         V ++ S +          R   Y +++++     
Sbjct: 63  LLFVADDEETAGYFYHDLIQLLGEADVFFYPSMFK---------RAVKYGQRDAAN---- 109

Query: 256 DRMRHSATRSLLERND---CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSL 312
           D +R      L  +N    CIV    +    + +    +   + ++     +   L   L
Sbjct: 110 DILRTEVLDRLASQNPAGTCIVTFPAALATRVAAKADMAAKTIVIEEEGHYDLTALEERL 169

Query: 313 VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           ++  +KR+D     G F V G  ++++ S   +  +R+  FG+D++ I  F   T     
Sbjct: 170 LEFGFKRKDYVYEPGDFAVRGSILDVY-SFASEFPFRIDFFGDDVDSIRSFEVQTQLSKE 228

Query: 373 NVETIKIYANSH-------------------YVTPRPTLNTAMKYIKEELKMRLIELEKE 413
            ++ + I  +                            +   +  I +E   R   +  E
Sbjct: 229 RLQAVTIVPDVDATGGDNVAFTDYLPESSLVITREPEYIRDVINNIYDEGFTREAAMSGE 288

Query: 414 GRLLEAQR 421
               E +R
Sbjct: 289 WAAYEGER 296



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     +I+       P++        E + + +N    +  
Sbjct: 734 TLTMSATPIPRTLQFSLMGARDLSVIQTPPPNRRPIQTEIHTFNHEIIAEAVNFEMSRNG 793

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++ +          L   + +     R +  H ++   E  +II D     +DVL+   +
Sbjct: 794 QVFIVTNRVASLGSLKALVEKYVPDARVVVGHGQMAPAELEKIILDFVNYDYDVLISTTI 853

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I  A   G     + L Q  GR  R+   K   Y      SI   +
Sbjct: 854 VENGIDIPNANTILIDAAHTFGL----SDLHQMRGRVGRSSQ-KAFCYLLAPPLSI---L 905

Query: 702 DETTRRREKQLE 713
            +  RRR + +E
Sbjct: 906 KDDARRRLQAIE 917


>gi|301119687|ref|XP_002907571.1| ATP-dependent RNA helicase DBP2, putative [Phytophthora infestans
           T30-4]
 gi|262106083|gb|EEY64135.1| ATP-dependent RNA helicase DBP2, putative [Phytophthora infestans
           T30-4]
          Length = 546

 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 16/186 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E+       +   I+ T           +   VE+     +   + D 
Sbjct: 323 QTLMWSAT-WPKEIVALANDFLTDFIQVTVGSLDLTANKRIKQIVEVMDDHQKYSSLQDH 381

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +    + G RI++   TKR A++L+  L       + +H      ER  ++R+ + G+  
Sbjct: 382 LRDIYEGG-RIIIFCETKRGADELSRNLRNTRYICKAIHGNKSQEERDYVLREFKDGRTQ 440

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   GLDI +   V   D  K     +    I  IGR AR  N    +   T +
Sbjct: 441 ILVATDVASRGLDIKDIRYVVNFDMPK-----NIEDYIHRIGRTARAGNKGTSISFFTAS 495

Query: 695 KSIQLA 700
            + +LA
Sbjct: 496 NNGRLA 501


>gi|269468408|gb|EEZ80073.1| hypothetical protein Sup05_1317 [uncultured SUP05 cluster
           bacterium]
          Length = 614

 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 97/260 (37%), Gaps = 26/260 (10%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
              + SAT P   +    + +   +I++    V    E      Q   +   ++      
Sbjct: 188 QIALFSATMPNIIKRVAEKFLNNPKIVK----VKTKTETAPTIGQKYCLVGGLSQKLDAL 243

Query: 583 LRIL---------LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            RIL         +   TK +  +L+E L  R      ++ +++  +R +II   + G  
Sbjct: 244 TRILEVTEFDAMIIFARTKTLTIELSEKLSARGFSAEAINGDIQQSQREKIINKFKKGGI 303

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
           D+LV  ++   GLD+P    V   D       +   + +  IGR  R       IL+   
Sbjct: 304 DILVATDVAARGLDVPRISHVVNYD-----IPQDAETYVHRIGRTGRAGREGEAILFVSH 358

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIMEVI---DPILLEDAATTNI 746
             + +   I+  TR++ + LE      IN + +   K++I E I   D  + E   T   
Sbjct: 359 RERRMLNNIERVTRQKIEPLELPTAKIINEKRIDTFKKRITETINNQDLSVFEKLVTEFQ 418

Query: 747 SIDAQQLSLSKKKGKAHLKS 766
             + +   L      AH+  
Sbjct: 419 EANEEIAHLKVAAALAHIAQ 438


>gi|217967893|ref|YP_002353399.1| transcription-repair coupling factor [Dictyoglomus turgidum DSM
           6724]
 gi|217336992|gb|ACK42785.1| transcription-repair coupling factor [Dictyoglomus turgidum DSM
           6724]
          Length = 1059

 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 96/241 (39%), Gaps = 23/241 (9%)

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           ++  ++P + +  N         E  N +     +  +S    Y    Y         + 
Sbjct: 44  LKRYEKPVLWITNN--------EEDLNIWEDLQEDLEISILPSYVHLPY---------ER 86

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVVSSV-SCIYGIGSVESYSQMIVQLKIGDSVEQKE 307
              + QI   R  A  +++   +  +++S+ S IY I   +   + I++++IG+ + +++
Sbjct: 87  PLRSPQIQGKRLRAISNIIYDKNFSIIASLKSLIYPIIPKDVLKERIIKIRIGEEIAREK 146

Query: 308 LLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPL 366
           +   L +  Y+R       G + + G  ++IF P +  +   R+  FG++I  I  F   
Sbjct: 147 IEKYLAENFYQRLPQVEKIGDYSIRGGILDIFSPIY--ENPIRIEFFGDEITSIRFFNLE 204

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
             + I   + + I   S  +  +      +K   +ELK  +        +L  +  ++ +
Sbjct: 205 DKRSIETTKEVFITPISELIANKDEEKYFLKN--KELKKYIFSYLPPNTILIFENYDESL 262

Query: 427 T 427
            
Sbjct: 263 A 263



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 79/207 (38%), Gaps = 12/207 (5%)

Query: 513 LRFEEWNCLRPTT--IVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           L+ E +    P    + +SATP    L     GI    ++        P++        E
Sbjct: 676 LQKEAFKKKYPHVDILYLSATPIPRTLSMVLSGIRQFSVLETPPENRLPIQTFVVEYNPE 735

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRD 627
            + + I    ++G ++          E + E L +      Y   H ++   +  E++ +
Sbjct: 736 IIQEGIRRELERGGQVYYVCNDIERLEKIREELSKLVPEATYAIAHGKMDDEKLTEVMSN 795

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              GK DVLV   ++  G+D+P    + + +A+  G  +    L Q  GR  R+      
Sbjct: 796 FYDGKIDVLVATTIIESGIDVPNANTLFVENAEHMGLAQ----LYQLRGRIGRSYKQ--- 848

Query: 688 LYADTITKSIQLAIDETTRRREKQLEH 714
            YA  +   ++    E+ +R E   E 
Sbjct: 849 AYAYFLHAPLKKLSLESIKRLEALKEF 875


>gi|310829374|ref|YP_003961731.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612]
 gi|308741108|gb|ADO38768.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612]
          Length = 547

 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 106/286 (37%), Gaps = 36/286 (12%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT   P     E  Q       I P  +V P +E +      ++ ++ +     
Sbjct: 177 QTVLFSATMPKPILKIAETYQKNPTMIEISPKTMVAPSIEQKYFNISDQNKFEALTRLLD 236

Query: 581 --QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             +  R L+   TK   +++TE L E    V  +H +++ + R+ +++    G+  +LV 
Sbjct: 237 VYKPQRSLIFCNTKHYVDEITENLQELGYSVDKIHGDMRQVSRLNVLKRFSQGRLKILVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   G+D+ +  +V   D        ++   +  IGR  R   S              
Sbjct: 297 TDVAARGIDVDDVDIVFNYDV-----PDNEEYYVHRIGRTGRAGKSG------------- 338

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
             +  T  R   Q +  K  +   +S++  ++   + I     A        +      +
Sbjct: 339 --LSLTLARSRDQFKLRKITDYTKKSIERDLIPTSEVINDIKIAHFKERFKLKAEKGELE 396

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
           +  A ++ L ++ + A     F  AA +      L++       +D
Sbjct: 397 RYIAIIQELEEKGYEA----EFI-AAVL------LQAQLPLSDAED 431


>gi|261884096|ref|ZP_06008135.1| transcription-repair coupling factor [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 247

 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 73/193 (37%), Gaps = 13/193 (6%)

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPR 389
            + G  ++I+P +  D   R+  F  +++ I  F     + I  +E + I     +V  +
Sbjct: 8   ALRGGILDIYPLYR-DFPVRLEFFDTEVDSIRTFSAEDQRSIAKLERVSILPAVEFVWTK 66

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYL 449
             L    + ++E   + L ++ K+      + L Q I +D+++L      + I  Y   L
Sbjct: 67  QELLLLAERLEEARAVSLKKITKKDV---KELLLQNIQHDIDLLRQGDIPEQIVKYVSLL 123

Query: 450 TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
                   P  L +Y  +D ++  DE    I     + + +     +L E G      + 
Sbjct: 124 YK-----QPSYLADYFAQDGIVLFDELGRIIEVTDSLEKEEEEWFISLLEEGKI----VH 174

Query: 510 NRPLRFEEWNCLR 522
              L F     + 
Sbjct: 175 GTKLSFTFKEIMA 187


>gi|224046936|ref|XP_002196956.1| PREDICTED: putative DEAD box polypeptide 48 [Taeniopygia guttata]
          Length = 341

 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 141 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 200

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 201 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 255

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 256 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 310

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 311 VKNDDIRILRDIEQ 324


>gi|311255076|ref|XP_003126098.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Sus
           scrofa]
          Length = 801

 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 14/154 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + +EI   A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R
Sbjct: 478 QLMEEIM--AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFR 535

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GK  +L+  ++   GLD+ +   V   D     +  S    +  IGR AR+ N      
Sbjct: 536 SGKAPILIATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYT 590

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
             T   +++ A      R   ++       INP+
Sbjct: 591 FFTPG-NLKQA------RELIKVLEEANQAINPK 617


>gi|19387225|gb|AAL87143.1|AF479824_1 DEAD box RNA helicase Vasa [Melanotaenia fluviatilis]
          Length = 400

 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 73/185 (39%), Gaps = 22/185 (11%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLV----------DPPVEIRSARTQVEDVY 572
            T++ SAT P   +      +  + +    G+V             V   S R Q+ ++ 
Sbjct: 148 QTLMFSATYPDDIQRMAADFMKADYLFLAVGIVGGACTDVEQTFIQVTKFSKREQLLELL 207

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               +      R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R GK
Sbjct: 208 KTTGM-----ERTMVFVETKRQADFIAVFLCQEKVSTTSIHGDREQREREQALGDFRSGK 262

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
             VLV  ++   GLDIP+   V   D        +    +  IGR  R  N+   I + D
Sbjct: 263 CPVLVATSVAARGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNTGRAISFYD 317

Query: 692 TITKS 696
               +
Sbjct: 318 PDADN 322


>gi|207367146|dbj|BAG72093.1| vasa [Trachurus japonicus]
          Length = 657

 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 14/154 (9%)

Query: 552 TGLVDPPVEI--RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           + +    +E+   S R Q+ D+       A    R ++ V TKR A+ +  +L +  I  
Sbjct: 444 SDVEQTFIEVTKFSKREQLVDLL-----KATGSERTMVFVETKRQADFIATFLSQTKIPT 498

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H + +  ER + + D R GK  VLV  ++   GLDIP+   V   D        +  
Sbjct: 499 TSIHGDREQREREQALADFRSGKCPVLVATSVAARGLDIPDVQHVVNFD-----LPNNID 553

Query: 670 SLIQTIGRAARNVNSK--VILYADTITKSIQLAI 701
             +  IGR  R  N+   V  Y       +  A+
Sbjct: 554 EYVHRIGRTGRCGNTGRAVSFYDQDADGQLARAL 587


>gi|241953571|ref|XP_002419507.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
 gi|223642847|emb|CAX43102.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
          Length = 667

 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 71/187 (37%), Gaps = 13/187 (6%)

Query: 524 TTIVVSAT-PGSWEL---EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
            T++ SAT P   ++   +  +  I   + R  G     +  +    + ++    I    
Sbjct: 381 QTLMFSATFPRDIQMLARDFLKDYIFLSVGR-VGSTSENITQKILYVEDDEKKSVILDLL 439

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                   ++   TKRMA++L +YLY++      +H +    ER + +   + G   +LV
Sbjct: 440 SANENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILV 499

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKS 696
              +   GLDIP    V   D             +  IGR  R  N  +   + +   K+
Sbjct: 500 ATAVAARGLDIPNVSHVINYD-----LPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKN 554

Query: 697 IQLAIDE 703
           I   + E
Sbjct: 555 IVKGLVE 561


>gi|328697410|ref|XP_001948642.2| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 718

 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 86/222 (38%), Gaps = 28/222 (12%)

Query: 519 NCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEI---RSAR 565
             +RP    ++ SAT            +V+ I    G ++          +E+       
Sbjct: 278 EQIRPDRQVLMWSATWPKEVQALAADFLVDYIQINVGSLELAANHNIQQLIEVCEDHEKD 337

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            ++ D+  +I+   + G + ++ V  K+  ++LT  +         MH +    +R  ++
Sbjct: 338 YKLFDLLMKISN--EPGFKAIIFVEKKKKVDELTRQIKNEGYIATSMHGDKSQQDRDHVL 395

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            + R GK  +LV  ++   GLD+ +   V   D     +  S    +  IGR  R+  + 
Sbjct: 396 NEFRNGKSPILVATDVAARGLDVDDVKYVINFD-----YPNSSEDYVHRIGRTGRSKQAG 450

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
            I Y    T +++ A D         +   + H + P+ + E
Sbjct: 451 -IAYTFFSTNNMRQAKD------LISIL-EEAHQVVPEELIE 484


>gi|324106744|gb|ADX41681.2| vasa [Cynoglossus semilaevis]
          Length = 722

 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 24/185 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRP----------TGLVDPPVEI--RSARTQVEDV 571
            T++ SAT    E+++     ++               + +    +E+   S R Q+ D+
Sbjct: 467 QTLMFSAT-FPEEIQKLAADFLKPDYLFLAVGIVGGACSDVEQTFIEVGKFSKREQLLDL 525

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       R ++ V  KR A+ +  +L + N+    +H + +  +R + + D + G
Sbjct: 526 VKTCG-----NERTIVFVEKKRQADFIATFLCQENVPTTSIHGDREQWQREQALADFKYG 580

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYA 690
           K  VLV  ++   GLDIP+   V   D        S    +  IGR  R  N  + + + 
Sbjct: 581 KCPVLVATSVAARGLDIPDVQHVVNFD-----LPGSIDEYVHRIGRTGRCGNVGRAVSFF 635

Query: 691 DTITK 695
           DT   
Sbjct: 636 DTDVD 640


>gi|291165173|gb|ADD81191.1| vasa [Euthynnus affinis]
          Length = 640

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 11/139 (7%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V   S R Q+ D+     +      R ++ V TKR A+ +  +L +  +    +H + +
Sbjct: 437 QVTKFSKREQLLDLLKTTGM-----ERTMVFVETKRQADFIATFLCQEKVPTTSIHGDRE 491

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + + D R GK  VLV  ++   GLDIP+   V   D        +    +  IGR
Sbjct: 492 QREREQALADFRSGKCPVLVATSVAARGLDIPDVQHVVNFD-----LPNNIDEYVHRIGR 546

Query: 678 AARNVNSK-VILYADTITK 695
             R  N+   + + D    
Sbjct: 547 TGRCGNTGRAVSFYDPDAD 565


>gi|317488238|ref|ZP_07946807.1| transcription-repair coupling factor [Eggerthella sp. 1_3_56FAA]
 gi|316912680|gb|EFV34220.1| transcription-repair coupling factor [Eggerthella sp. 1_3_56FAA]
          Length = 1022

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 130/373 (34%), Gaps = 53/373 (14%)

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
           E ++   +L ++ Y+        GTF V G +I++FP +L     R+  FG+++EEI   
Sbjct: 22  EFEDFAHALEERGYRNTGELDGPGTFAVRGGTIDVFPGNL-VYPVRLDFFGDELEEIRRI 80

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLE 423
            P TGQ I+ +  + IY    +   +  L  A        + +L        +L      
Sbjct: 81  VPTTGQTIQALPDVSIYPVVEFSCSKRGLARA--------RQKLERPAATNPVLRDV--- 129

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
                 LE L+        +    YL          TL +Y+   +L  + E       +
Sbjct: 130 ------LEKLDGGLRFDGSDMLLPYLY-----ATTSTLGDYVRPGALSVLLEPRSLFDDM 178

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
           S  Y     R       G  +P                      + A PG+    + Q  
Sbjct: 179 SHAYDDAAGRAK-----GSSIP-------------------VDGLYAEPGAVSFGEGQRA 214

Query: 544 IVEQIIRPTGLVDPPVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
               I+R  G VD  + ++        + ++  +         ++ +    R  +D+   
Sbjct: 215 TYVSIMRVGGHVDDELPVKRVEVAGHPDKLFGRLRSLVDTDYTVVFSASNFRARQDMKLA 274

Query: 602 LYERNIRVR-YMHSEVKT-LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
             +  + ++  + +E           R LR G  +V+     L  G+ IP+  L  +  +
Sbjct: 275 FVDHGLPIQETLDAEEDADELEGIAKRRLRRGVVNVVDVDVPL--GMIIPKAKLAIVSLS 332

Query: 660 DKEGFLRSKTSLI 672
           D +G   S+ S  
Sbjct: 333 DTQGASTSRPSRH 345



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 22/192 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    ++     + +     + ++ PP E R     V     + V   I    
Sbjct: 629 VLTLSATPIPRTMQMSLSGVRDM----SLILTPPDERRPVEVHVGEWDPDVVSGAIRREL 684

Query: 580 QQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +G ++       R  E+    +T    E  + V   H ++   +   ++ D   G+ DV
Sbjct: 685 ARGGQVYYVSNRVRSMEEAVRRVTAAAGEARVGVA--HGQMSKEQLERVMEDFSAGELDV 742

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  G+D P    + I D+ + G  +    + Q  GR  R   S    YA  +  
Sbjct: 743 LVATTIIESGIDNPHTNTLIIEDSQRYGLAQ----MYQLKGRVGR---SCTQAYAYFMFP 795

Query: 696 SIQLAIDETTRR 707
                 +E   R
Sbjct: 796 EHMELTEEAAAR 807



 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 22/165 (13%)

Query: 146 DYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKTFT---MAKVIEAMQRPAIVMAP 201
            Y  + DQ AAIA +   + S +   +L+ G  G GKT      A       +  +V+ P
Sbjct: 476 PYQETPDQLAAIADVKADMQSAKPMDRLVCGDVGFGKTEVALRAAFKATQDSKQVMVLCP 535

Query: 202 NKILAAQLYSEFKNFFPH--NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
             ILA Q Y+ FK         VE    +    Q  A +              ++ D   
Sbjct: 536 TTILAQQHYTNFKERCEPFGVRVEVLSRFRTPAQQAAAL-----------KGFQEGDVDV 584

Query: 260 HSATRSLLERND-----CIVVSSVSCIYGIGSVESYSQMIVQLKI 299
              T  LL R+       +V+      +G+G  E    +   + +
Sbjct: 585 LVGTHRLLSRDVNPHDLGLVIIDEEQRFGVGHKEQMKNLRESIDV 629


>gi|307111380|gb|EFN59614.1| hypothetical protein CHLNCDRAFT_29172 [Chlorella variabilis]
          Length = 402

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 22/193 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              ++VSAT     LE     + + +        +   G+    V +     + +   D+
Sbjct: 203 TQVVLVSATLPHEVLEMTHKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 262

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TKR  + LTE + + N  V  MH ++   ER  I+ + R G
Sbjct: 263 YDTLTIT-----QAVIFCNTKRKVDWLTEKMRQNNFTVSAMHGDMPQKEREAIMDEFRKG 317

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
              VL+  ++   GLD+ +  LV   D        S+   I  IGR+ R     V I + 
Sbjct: 318 ATRVLITTDVWARGLDVQQVSLVINYD-----LPNSRELYIHRIGRSGRFGRKGVAINFV 372

Query: 691 DTITKSIQLAIDE 703
                 I   I++
Sbjct: 373 KNDDIKILRDIEQ 385


>gi|147861063|emb|CAN78736.1| hypothetical protein VITISV_003102 [Vitis vinifera]
 gi|297743544|emb|CBI36411.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 94/260 (36%), Gaps = 28/260 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      D+    F+ +   R  T++ SAT  +      +  +V+ +    G  
Sbjct: 309 RLVDLGFE-----DDIREVFDHFKAQR-QTLLFSATMPTKIQNFARSALVKPVTVNVGRA 362

Query: 555 ----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + Q   +   +    +    +L+    K   +D+ EYL  + +   
Sbjct: 363 GAANLDVIQEVEYVK-QEAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAV 421

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER   I   + GK DVLV  ++  +GLD P+   V   D   E       +
Sbjct: 422 AIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIKHVINYDMPAE-----IEN 476

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
            +  IGR  R   + +        +S    +D       K L    K  I P      + 
Sbjct: 477 YVHRIGRTGRCGKTGIATTFINKNQSETTLLD------LKHLLQEAKQRIPPV-----LA 525

Query: 731 EVIDPILLEDAATTNISIDA 750
           E+ DP+   DA T    +  
Sbjct: 526 ELNDPMEDVDAITDASGVKG 545


>gi|291165179|gb|ADD81194.1| vasa [Auxis thazard]
          Length = 627

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 11/139 (7%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V   S R Q+ D+            R ++ V TKR A+ +  +L +  +    +H + +
Sbjct: 427 QVTKFSKREQLLDLLKTTG-----SERTMVFVETKRQADFIATFLCQEKVPTTSIHGDRE 481

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + + D R GK  VLV  ++   GLDIP+   V   D        +    +  IGR
Sbjct: 482 QREREQALADFRSGKCPVLVATSVAARGLDIPDVQHVVNFD-----LPNNIDEYVHRIGR 536

Query: 678 AARNVNSK-VILYADTITK 695
             R  N+   + + D    
Sbjct: 537 TGRCGNTGRAVSFYDPDAD 555


>gi|195385611|ref|XP_002051498.1| vas [Drosophila virilis]
 gi|21361025|gb|AAM49782.1|AF513908_1 DEAD-box RNA helicase [Drosophila virilis]
 gi|194147955|gb|EDW63653.1| vas [Drosophila virilis]
          Length = 625

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 105/323 (32%), Gaps = 51/323 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ + + +  D++   +                + + GF        R +   
Sbjct: 341 TPGRLLDFV-DRTFITFDDTRFIV----------LDEADRMLDMGF----SDSMRKIMHH 385

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQ 567
           +       T++ SAT    E+++  G  ++  +  T          +     E+     +
Sbjct: 386 QTMRPEHQTLMFSAT-FPEEIQRMAGEFLKNYVFVTIGVVGGACSDVQQTVYEVNKFNKR 444

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            +    EI      G   ++ V TKR A+ L  +  E       +H +    +R + +RD
Sbjct: 445 SK--LMEILREGADG--TIVFVETKRGADFLASFFSETEFPTTSIHGDRLQSQREQALRD 500

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + G   VL+  ++   GLDI     V   D        +    +  IGR  R  NS   
Sbjct: 501 FKTGTMKVLIATSVASRGLDIKNVKHVINYD-----MPTNIDDYVHRIGRTGRVGNSGRA 555

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
                  +   LA D                    +   +++ E +  I    ++     
Sbjct: 556 TSFFDPEQDRTLAADLIK---------------ILEGSGQEVPEFLKEIGGGSSSYFGSK 600

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQ 770
                +    K G  H+++L  +
Sbjct: 601 FGGIDVRGGAKNG--HIENLEDE 621


>gi|15231074|ref|NP_191416.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75335836|sp|Q9M2F9|RH52_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 52
 gi|6735374|emb|CAB68195.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|15146288|gb|AAK83627.1| AT3g58570/F14P22_160 [Arabidopsis thaliana]
 gi|21593710|gb|AAM65677.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|27363456|gb|AAO11647.1| At3g58570/F14P22_160 [Arabidopsis thaliana]
 gi|332646279|gb|AEE79800.1| DEAD-box ATP-dependent RNA helicase 52 [Arabidopsis thaliana]
          Length = 646

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 71/196 (36%), Gaps = 20/196 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYD 573
              T++ SAT    E+++     +   I          T L+   VE      +   + D
Sbjct: 333 VRQTMLFSAT-FPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMD 391

Query: 574 EINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            ++   + G +      L+ V TK+ A+ L  +L         +H +    ER   +R  
Sbjct: 392 LLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSF 451

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           + G+  +LV  ++   GLDIP    V   D             +  IGR  R  NS    
Sbjct: 452 KTGRTPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGNSGLAT 506

Query: 688 LYADTITKSIQLAIDE 703
            + +    ++   + E
Sbjct: 507 AFFNDNNTTMAKPLAE 522


>gi|224010271|ref|XP_002294093.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220970110|gb|EED88448.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 471

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 7/155 (4%)

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           V   +++ S + +  ++   +        R+L+ V TK+  + LT  L     + R MH 
Sbjct: 288 VTQMIDVCSDQDKYRNLLRYLRENLTSKDRVLVFVETKKGCDMLTRSLRMDGFQARAMHG 347

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +    ER  ++R+ +  +  +LV  ++   GLD+ +  +V   D     F     + I  
Sbjct: 348 DKSQEERDWVLREFKSCQATLLVATDVAARGLDVDDIKMVVNFD-----FPNDTETYIHR 402

Query: 675 IGRAARNVNSK--VILYADTITKSIQLAIDETTRR 707
           IGR  R       V  +       +   I E   R
Sbjct: 403 IGRTGRAGKKGFAVSFFVTEKNGRMARDIIEILNR 437


>gi|195109284|ref|XP_001999217.1| GI23184 [Drosophila mojavensis]
 gi|193915811|gb|EDW14678.1| GI23184 [Drosophila mojavensis]
          Length = 724

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 13/164 (7%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++                 +++ +  +I   ++   +I++ V TKR  +
Sbjct: 487 LELSANHNIRQVVDVCDEFSKE-------DKLKSLLSDIYDTSENPGKIIIFVETKRRVD 539

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L  ++    +R   +H +    ER  ++R+ R GK ++LV  ++   GLD+     V  
Sbjct: 540 NLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVIN 599

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            D     + ++    I  IGR  R+ N+K   +A     + + A
Sbjct: 600 FD-----YPQNSEDYIHRIGRTGRS-NTKGTSFAFFTKNNAKQA 637


>gi|291165177|gb|ADD81193.1| vasa [Auxis rochei]
          Length = 627

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 11/139 (7%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V   S R Q+ D+            R ++ V TKR A+ +  +L +  +    +H + +
Sbjct: 426 QVTKFSKREQLLDLLKTTGT-----ERTMVFVETKRQADFIATFLCQEKVPTTSIHGDRE 480

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + + D R GK  VLV  ++   GLDIP+   V   D        +    +  IGR
Sbjct: 481 QREREQALADFRSGKCPVLVATSVAARGLDIPDVQHVVNFD-----LPNNIDEYVHRIGR 535

Query: 678 AARNVNSK-VILYADTITK 695
             R  N+   + + D    
Sbjct: 536 TGRCGNTGRAVSFYDPDAD 554


>gi|219686271|dbj|BAH08688.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Pagrus major]
          Length = 631

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 11/139 (7%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V   S R Q+ D+            R ++ V TKR A+ +  YL +  +    +H + +
Sbjct: 429 QVTKFSKREQLFDLLKTTGT-----ERTMVFVETKRQADFIATYLCQEKVPTTSIHGDRE 483

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER   + D R GK  V+V  ++   GLDIP+   V   D  K+         +  IGR
Sbjct: 484 QRERELALADFRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPKD-----IDEYVHRIGR 538

Query: 678 AARNVNSK-VILYADTITK 695
             R  N+   + + D    
Sbjct: 539 TGRCGNTGRAVSFYDPEAD 557


>gi|312074866|ref|XP_003140162.1| ATP-dependent RNA helicase An3 [Loa loa]
 gi|307764673|gb|EFO23907.1| ATP-dependent RNA helicase An3 [Loa loa]
          Length = 603

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 8/134 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + + +++   +GL  L+ V TKR A DL  YL   N  V  +H ++K  ER   +   R 
Sbjct: 304 LMELLDIDVNRGL-ALVFVETKRGANDLAWYLQRNNYNVMPIHGDLKQYERERHLEMFRS 362

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI--L 688
           G+ ++LV   +   GLDIP    V   D             +  IGR  R  N  +    
Sbjct: 363 GQTNILVATAVAARGLDIPNVKHVINFD-----LPTDIDEYVHRIGRTGRAGNIGLATSF 417

Query: 689 YADTITKSIQLAID 702
           + D      +  +D
Sbjct: 418 FTDRNRNISRDLMD 431


>gi|258593189|emb|CBE69527.1| ATP-dependent RNA helicase [NC10 bacterium 'Dutch sediment']
          Length = 407

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 86/253 (33%), Gaps = 26/253 (10%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y  +            + Q+  +   +  R     + GF      D R L   
Sbjct: 132 TPGRLIDYFKQGVY--------ELSQVEVLVVDEADRMF---DMGFI----KDLRFLLRR 176

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVEDV 571
                +  + + SAT    E+E     +   I   I P  +    VE  +     Q +  
Sbjct: 177 LPPYHKRQSFLFSATLSFREMELSYEFMNNPIKVAISPEQVTVDKVEHLLFHVEKQEKFR 236

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                L  +   RIL+   T++ AE LT+ L     R   +   +   +R++II   + G
Sbjct: 237 LLRWLLQREAWQRILIFSNTRQGAERLTDKLVRCGFRAGLISGSIDQRKRLQIITKFKAG 296

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYA 690
              +LV  ++   GL +     V   D       +     +  IGR AR     K I  A
Sbjct: 297 TLPILVATDVASRGLHVEAVSHVINYD-----LPQDPEDYVHRIGRTARAGAAGKAISLA 351

Query: 691 DTITKSIQLAIDE 703
           D        AI+ 
Sbjct: 352 DEEYVLSLDAIER 364


>gi|169831556|ref|YP_001717538.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638400|gb|ACA59906.1| DEAD/DEAH box helicase domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 533

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 71/175 (40%), Gaps = 15/175 (8%)

Query: 524 TTIVVSAT-PGS-------WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT PG        +        I  + +    +     E+R     ++ +    
Sbjct: 183 QTLLFSATIPGPIARLAEKYMRTPVHVSINPEYVAAPDIWQVYYELR----NIDHLEALC 238

Query: 576 NLA-AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            +  A+   R ++   TKR  ++L E L  R     ++H +++  +R  ++   R G+ D
Sbjct: 239 RILDAEAVERAIIFCRTKRRVDELAEALRSRGYSADHIHGDLEQNQRNRVMGAFREGEID 298

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           +LV  ++   G+D+     V   D  ++    S    I   GRA R   +  ++Y
Sbjct: 299 LLVATDVAARGIDVQNISHVINYDCPQD--PESYVHRIGRTGRAGRTGTAITLVY 351


>gi|312377148|gb|EFR24056.1| hypothetical protein AND_11649 [Anopheles darlingi]
          Length = 400

 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 200 ATQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 259

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER EI+++ R 
Sbjct: 260 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRS 314

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 315 GQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINF 369

Query: 690 ADTITKSIQLAIDE 703
             +    I   I++
Sbjct: 370 VKSDDIRILRDIEQ 383


>gi|89147697|gb|ABD62707.1| vasa protein [Acanthopagrus schlegelii]
          Length = 260

 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 10/126 (7%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V   S R Q+ D+            R ++ V TKR A+ +  YL +  +    +H + +
Sbjct: 145 QVTKFSKREQLLDLLKTTGT-----ERTMVFVETKRQADFIATYLCQEKVPTTSIHGDRE 199

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + + D R GK  V+V  ++   GLDIP+   V   D  KE         +  IGR
Sbjct: 200 QREREQALADFRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPKE-----IDEYVHRIGR 254

Query: 678 AARNVN 683
             R  N
Sbjct: 255 TGRCGN 260


>gi|330793454|ref|XP_003284799.1| hypothetical protein DICPUDRAFT_28243 [Dictyostelium purpureum]
 gi|325085293|gb|EGC38703.1| hypothetical protein DICPUDRAFT_28243 [Dictyostelium purpureum]
          Length = 558

 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 79/208 (37%), Gaps = 21/208 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L ++GF      D+     + +   R  T++ SAT      E  +  +V  +    G  
Sbjct: 276 RLIDFGFE-----DDIRSVLDHFTNQR-QTLLFSATMPKKIQEFARSALVLPVEVNVGRA 329

Query: 555 ------VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
                 V   VE      ++  + + +         +L+    K+  +D+ EYL  + + 
Sbjct: 330 GAANLNVTQEVEFVKPEAKIVYLLECLQKTPPP---VLIFCENKKDVDDIYEYLLLKQVE 386

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H +    ER   I+  R GK DVLV  ++  +GLD P+   V   D  +E      
Sbjct: 387 AVSIHGDKSQEEREGAIKAFREGKKDVLVATDVASKGLDFPDIQHVINFDMPRE-----I 441

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKS 696
            + I  IGR  R  N  V       T +
Sbjct: 442 ENYIHRIGRTGRRGNKGVATTFINKTNT 469


>gi|195452524|ref|XP_002073391.1| GK13178 [Drosophila willistoni]
 gi|194169476|gb|EDW84377.1| GK13178 [Drosophila willistoni]
          Length = 395

 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 195 ATQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 254

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER EI+++ R 
Sbjct: 255 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRA 309

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 310 GQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINF 364

Query: 690 ADTITKSIQLAIDE 703
             +    I   I++
Sbjct: 365 VKSDDIRILRDIEQ 378


>gi|326915068|ref|XP_003203843.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Meleagris
           gallopavo]
          Length = 369

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 169 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 228

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 229 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 283

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 284 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 338

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 339 VKNDDIRILRDIEQ 352


>gi|168049229|ref|XP_001777066.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671509|gb|EDQ58059.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 616

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 92/257 (35%), Gaps = 29/257 (11%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      ++    F+ +   R  T++ SAT         +  +V+ ++   G  
Sbjct: 338 RLVDLGFE-----EDIREVFDHFRGQR-QTLLFSATMPKKIQNFAKSALVKPVVVNVGRA 391

Query: 555 ----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + Q   +   +    +    +L+    K   +D+ EYL  + +   
Sbjct: 392 GAANLDVIQEVEYVK-QEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAV 450

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER   I   + GK DVLV  ++  +GLD P+   V   D   E       +
Sbjct: 451 AIHGGKDQEEREFAIASFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE-----IEN 505

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
            +  IGR  R   + +        +S  + +D       K L    K  I P      ++
Sbjct: 506 YVHRIGRTGRCGKTGIATSFINKNQSETILLD------LKHLLKEAKQRIPP------VL 553

Query: 731 EVIDPILLEDAATTNIS 747
             +D  + E       S
Sbjct: 554 ATLDDPMEEAEELAKAS 570


>gi|300122867|emb|CBK23874.2| unnamed protein product [Blastocystis hominis]
          Length = 394

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 73/191 (38%), Gaps = 16/191 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYD 573
               ++VSAT     L+     + E +        +   G+    V +     + + + D
Sbjct: 169 ATQVVLVSATMPKEVLDMTSKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 228

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
             N       + ++   T+R  E L   L E N  V  MH ++   ER  I+ + R G  
Sbjct: 229 LYNNLTIT--QAVIFCNTRRKVEWLAAKLREANFTVSSMHGDMPQKERDRIMEEFRAGNS 286

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
            VL+  ++   GLD+ +  LV   D        S+   I  IGR+ R     V I +   
Sbjct: 287 RVLIATDVWGRGLDVQQVSLVINYD-----LPNSRELYIHRIGRSGRFGRKGVGINFVTN 341

Query: 693 ITKSIQLAIDE 703
              S+   I++
Sbjct: 342 EDISVLRDIEQ 352


>gi|300122033|emb|CBK22607.2| unnamed protein product [Blastocystis hominis]
          Length = 408

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 73/191 (38%), Gaps = 16/191 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYD 573
               ++VSAT     L+     + E +        +   G+    V +     + + + D
Sbjct: 169 ATQVVLVSATMPKEVLDMTSKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 228

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
             N       + ++   T+R  E L   L E N  V  MH ++   ER  I+ + R G  
Sbjct: 229 LYNNLTIT--QAVIFCNTRRKVEWLAAKLREANFTVSSMHGDMPQKERDRIMEEFRAGNS 286

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
            VL+  ++   GLD+ +  LV   D        S+   I  IGR+ R     V I +   
Sbjct: 287 RVLIATDVWGRGLDVQQVSLVINYD-----LPNSRELYIHRIGRSGRFGRKGVGINFVTN 341

Query: 693 ITKSIQLAIDE 703
              S+   I++
Sbjct: 342 EDISVLRDIEQ 352


>gi|281425314|ref|ZP_06256227.1| hypothetical protein HMPREF0971_02286 [Prevotella oris F0302]
 gi|281400607|gb|EFB31438.1| transcription-repair coupling factor [Prevotella oris F0302]
          Length = 1139

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 84/234 (35%), Gaps = 17/234 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A+ +LL+    +     L G   S      A V E   +  + +  +   A   Y +
Sbjct: 4   QTGALLKLLQ--DKQGGNIFLQGQQASATPLLFASVAEKTVQTFLFVLQDADEAGYFYHD 61

Query: 213 FKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI--DRMRHSATRSLLERN 270
                    V +F S Y          R+  Y +++S+ NE +  + +   + R +    
Sbjct: 62  LTQVMGTENVLFFPSSYK---------RSVKYGQRDSA-NEILRTEVLAKVSARDVKAHE 111

Query: 271 DCIVVSSVSCIYGIG-SVESYSQMIVQLKI-GDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
              +VS    +  +  S +   +  + LK     ++  ++  +L    ++  D     G 
Sbjct: 112 ALFIVSYPEALAELVISKKHLDERRLSLKTGQQQIDITDVAHTLRDYGFQEVDYVYEPGQ 171

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           F V G  ++++    E   +R+  FG +I+ I  F             I+I   
Sbjct: 172 FAVRGSILDVYSFSCE-YPYRIDFFGREIDTIRTFEVQDQLSKDKQSDIEIVPE 224



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     IIR       P+    A    E + D IN    +  
Sbjct: 725 TLTMSATPIPRTLQFSLMGARDMSIIRTPPPNRYPIHTELATFSHEVIADAINFEMSRNG 784

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   +++     R    H ++      +++       +DVL+   +
Sbjct: 785 QVYFVHDRINGLQEIANLIHKYVPDCRVAIGHGQMPPDRLEKVLMGFMNYDYDVLLSTTI 844

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I DA + G     + L Q  GR  R+              S+    
Sbjct: 845 VENGIDISNANTMIINDAHRFGL----SDLHQMRGRVGRSNRKAFCYLLAPPKTSLTPE- 899

Query: 702 DETTRRREKQLEHNKKHN 719
               RRR + LE+  +  
Sbjct: 900 ---ARRRLEALENFSELG 914


>gi|254994680|ref|ZP_05276870.1| transcription repair coupling factor (mfd) [Anaplasma marginale
           str. Mississippi]
          Length = 1099

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 99/308 (32%), Gaps = 43/308 (13%)

Query: 189 IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           +E    P + +       A L    K F     V               +P+ D+   K 
Sbjct: 1   MEDRHTPFVFVVQEGTSLAHLAKTLKFFDRERDVFI-------------LPKWDSIPHKG 47

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVV--SSVSCIYGIGSVESYSQMIVQLKIGDSVEQK 306
            S +  +   R      +       V+  +S +    +    S +   + +  GD +   
Sbjct: 48  VSPSSLVMATRMKCLLDISNAKAPYVMLTTSGAVAQKVLPAHSVASATITVAPGDGLSMD 107

Query: 307 ELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPL 366
            L+  LV   Y +       G+F V G+ ++IF   +++   R+    + +E I  F   
Sbjct: 108 ALVQHLVACGYTQSSAVREVGSFAVRGEIVDIFQP-IDNKPTRIDFCYDAVESIRCFDLD 166

Query: 367 TGQK-IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           T       + ++ IY  S  +     LN                          Q+    
Sbjct: 167 TQITDGGALPSLVIYPASEVIKTEENLNRFYTRY-------------------MQQYPNP 207

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE--SHVTIPQI 483
                E + +   C   E +   L      +   T+F+Y+P ++ L + E  S   + ++
Sbjct: 208 DPAFAEAMLSRQKCMGEEQWLPLL----QADELSTIFDYVP-NAKLVLAEQASEEVLRRL 262

Query: 484 SGMYRGDF 491
            G    D+
Sbjct: 263 EGAQEEDY 270



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 17/186 (9%)

Query: 516 EEWNCLRP--TTIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVED 570
           E+   LR     + +SATP    L     GI    ++R  P G +   + I      +  
Sbjct: 699 EQLKKLRNDVHVLSLSATPIPRTLHMSLSGIKNLSVLRTPPMGRMAVDIAIIQYDGNI-- 756

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +   I     +G R+  T       +    DL + +    + V   H    T    +I+ 
Sbjct: 757 IKTAILDEVSRGGRVFFTCPFISDIDGVLADLQKLVPNVKVEVA--HGRTSTRALDKIMN 814

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D   GKF VL+  +++  G+DIP    + + +AD  G  +    L Q  GR  R+     
Sbjct: 815 DFFDGKFSVLLTTSIIESGIDIPFANTIIVHNADMFGLAQ----LYQLKGRVGRSTLKGY 870

Query: 687 ILYADT 692
             +  +
Sbjct: 871 AYFIVS 876


>gi|73969095|ref|XP_860442.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 5 [Canis
           familiaris]
          Length = 630

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 316 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 375

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 376 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 429

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 430 QA------RELIKVLEEANQAINPK 448


>gi|322389137|ref|ZP_08062700.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           903]
 gi|321144179|gb|EFX39594.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           903]
          Length = 523

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVD-QYYIRVKEGEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   +   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKTGQSITFVSPNEM 348

Query: 696 SIQLAIDETTRRREKQL-------EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K +           K  I  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGMKPATAAEAFQAKKQIALKKIERDFEDEKIRTNFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    + ++   ++ SL  Q
Sbjct: 409 AAEF---TPEELAMYILSLTVQ 427


>gi|300707737|ref|XP_002996065.1| hypothetical protein NCER_100895 [Nosema ceranae BRL01]
 gi|239605329|gb|EEQ82394.1| hypothetical protein NCER_100895 [Nosema ceranae BRL01]
          Length = 528

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 77/176 (43%), Gaps = 19/176 (10%)

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
            V  T GS EL+    I ++QI+         ++      ++ +  +E     ++  +++
Sbjct: 330 FVQLTIGSVELKT--NIKIKQIV-------SVIDSHEKANKLHESLNE-----KKNEKVI 375

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +   TKRM ++L + L  R  +   +H +     R  II D R G  ++L+  ++   GL
Sbjct: 376 IFANTKRMCDNLEDDLSRRGYKAVAIHGDKSQNIRDRIISDFRSGYKNILIATDVAARGL 435

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           DI    LV   D     F  +    +  IGR AR   ++ + ++   +++   A +
Sbjct: 436 DIKNVALVINYD-----FPNNIEDYVHRIGRTARGDVTEGLSHSFFTSENSACAKE 486


>gi|224095173|ref|XP_002195734.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Taeniopygia
           guttata]
          Length = 842

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 522 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 581

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 582 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 635

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 636 QA------RELIKVLEEANQAINPK 654


>gi|62088770|dbj|BAD92832.1| DEAD box polypeptide 17 isoform p82 variant [Homo sapiens]
          Length = 737

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 417 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 476

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 477 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 530

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 531 QA------RELIKVLEEANQAINPK 549


>gi|296087640|emb|CBI34896.3| unnamed protein product [Vitis vinifera]
          Length = 1180

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 68/178 (38%), Gaps = 16/178 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV---------EIRSARTQVEDVY 572
           R  T++ +AT      +    ++V  +    G VD  V         E+     +     
Sbjct: 199 RRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEK-HKRL 257

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I  + + G +I++   TK+M + L   L  R      +H +    ER  ++   R G+
Sbjct: 258 EQILRSQEPGSKIIIFCSTKKMCDQLARNLT-RPFGAAAIHGDKSQGERDYVLNQFRTGR 316

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
             VLV  ++   GLDI +  +V   D     F       +  IGR  R   + V    
Sbjct: 317 SPVLVATDVAARGLDIKDIRVVINYD-----FPTGVEDYVHRIGRTGRAGATGVAYTF 369


>gi|307169387|gb|EFN62107.1| Eukaryotic initiation factor 4A-III [Camponotus floridanus]
          Length = 402

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               ++VSAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 202 ATQVVLVSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 261

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 262 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRS 316

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 317 GQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVSINF 371

Query: 690 ADTITKSIQLAIDE 703
             T    I   I++
Sbjct: 372 VKTDDIRILRDIEQ 385


>gi|19528517|gb|AAL90373.1| RE50350p [Drosophila melanogaster]
          Length = 399

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 199 ATQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 258

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER EI+++ R 
Sbjct: 259 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRA 313

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 314 GQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINF 368

Query: 690 ADTITKSIQLAIDE 703
             +    I   I++
Sbjct: 369 VKSDDIRILRDIEQ 382


>gi|326491449|dbj|BAJ94202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 674

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YDEI 575
            T++ +AT           ++V  +    G VD  V  ++    VE +         ++I
Sbjct: 191 QTLMYTATWPKEVRRIADELLVHPVQVTIGSVDELVANKAITQHVEVITPSEKLRRLEQI 250

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             +   G +IL+   TKRM + L+  L  R      +H +    ER +++   R G+  +
Sbjct: 251 LRSHDSGSKILIFCTTKRMCDQLSRTLN-RQFGAAAIHGDKSQNEREKVLSQFRSGRAPI 309

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI +  +V   D     F       +  IGR  R   + +         
Sbjct: 310 LVATDVAARGLDIKDIRVVINYD-----FPTGVEDYVHRIGRTGRAGATGLAYTFLCDQD 364

Query: 696 S 696
           S
Sbjct: 365 S 365


>gi|24645031|ref|NP_649788.2| eIF4AIII [Drosophila melanogaster]
 gi|7299019|gb|AAF54221.1| eIF4AIII [Drosophila melanogaster]
          Length = 399

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 199 ATQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 258

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER EI+++ R 
Sbjct: 259 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRA 313

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 314 GQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINF 368

Query: 690 ADTITKSIQLAIDE 703
             +    I   I++
Sbjct: 369 VKSDDIRILRDIEQ 382


>gi|125775187|ref|XP_001358845.1| GA20384 [Drosophila pseudoobscura pseudoobscura]
 gi|195144826|ref|XP_002013397.1| GL23429 [Drosophila persimilis]
 gi|54638586|gb|EAL27988.1| GA20384 [Drosophila pseudoobscura pseudoobscura]
 gi|194102340|gb|EDW24383.1| GL23429 [Drosophila persimilis]
          Length = 399

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 199 ATQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 258

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER EI+++ R 
Sbjct: 259 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRA 313

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 314 GQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINF 368

Query: 690 ADTITKSIQLAIDE 703
             +    I   I++
Sbjct: 369 VKSDDIRILRDIEQ 382


>gi|302422468|ref|XP_003009064.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261352210|gb|EEY14638.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 532

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 6/140 (4%)

Query: 566 TQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
            Q+ ++     LA  QG R  L+  +       LT+      +  R++  +  T+ER EI
Sbjct: 143 DQINEITVRSWLARAQGRRSTLVFCVDLAHVAGLTQKFRRFGLDARFVTGDTPTIERSEI 202

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R  R G+F VLV   +  EG DIP    + +    +     S+  L+Q IGR  R    
Sbjct: 203 LRAFRNGEFPVLVNCGVFTEGTDIPNIDCIILARPTR-----SRNLLVQMIGRGMRLHAG 257

Query: 685 KVILYADTITKSIQLAIDET 704
           K   +   +  S++  I  T
Sbjct: 258 KTNCHIIDMVSSLETGIVTT 277


>gi|42779348|ref|NP_976595.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|206977074|ref|ZP_03237974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217957807|ref|YP_002336351.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|222094007|ref|YP_002528058.1| dead/deah box helicase [Bacillus cereus Q1]
 gi|229137077|ref|ZP_04265701.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST26]
 gi|229194624|ref|ZP_04321421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
 gi|81700027|sp|Q73EU1|CSHA_BACC1 RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|42735263|gb|AAS39203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
 gi|206744723|gb|EDZ56130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217064501|gb|ACJ78751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|221238056|gb|ACM10766.1| DEAD/DEAH box helicase [Bacillus cereus Q1]
 gi|228588845|gb|EEK46866.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
 gi|228646384|gb|EEL02594.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST26]
 gi|324324246|gb|ADY19506.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 525

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  +++    ++      + + EK+   I+   L         +  +  
Sbjct: 351 QLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQNTIENENLAYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|255560866|ref|XP_002521446.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223539345|gb|EEF40936.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 781

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 71/183 (38%), Gaps = 14/183 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           R  T++ +AT      +    ++V  +    G VD  V  +S    +E +         +
Sbjct: 340 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELVANKSITQYIEVLAPMEKHRRLE 399

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  + + G +I++   TK+M + L   L  R      +H +    ER  ++   R G+ 
Sbjct: 400 QILRSQEPGSKIIIFCSTKKMCDQLARNLT-RTFGAAAIHGDKSQSERDHVLSQFRTGRS 458

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VLV  ++   GLDI +  +V   D     F       +  IGR  R   + V       
Sbjct: 459 PVLVATDVAARGLDIKDIRVVINYD-----FPTGVEDYVHRIGRTGRAGATGVAYTFFGD 513

Query: 694 TKS 696
             +
Sbjct: 514 QDA 516


>gi|50291147|ref|XP_448006.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661189|sp|Q6FP38|DBP1_CANGA RecName: Full=ATP-dependent RNA helicase DBP1
 gi|49527317|emb|CAG60957.1| unnamed protein product [Candida glabrata]
          Length = 604

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 25/191 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII---------RPTGLVDPPVEIRSARTQ---VEDV 571
            T++ SAT    E++      ++  I             +    + +         ++ +
Sbjct: 332 QTLMFSAT-FPREIQHLARDFLKDYIFLSVGRVGSTSENIQQKVLFVEDYDKNSALLDIL 390

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +EI+         L+ V TKRMA+ LT++L  +N +   +H +    ER   +   R G
Sbjct: 391 INEIDGL------TLVFVETKRMADQLTDFLIVQNFKATAIHGDRTQAERERALHAFRNG 444

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
             ++LV   +   GLDIP    V   D             +  IGR  R  N  V     
Sbjct: 445 IANILVATAVAARGLDIPNVTNVINYD-----LPTDIDDYVHRIGRTGRAGNVGVATSFF 499

Query: 692 TITKSIQLAID 702
             + S+ +A +
Sbjct: 500 N-SNSMNIAKE 509


>gi|82540694|ref|XP_724645.1| RNA helicase-1 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479359|gb|EAA16210.1| RNA helicase-1 [Plasmodium yoelii yoelii]
          Length = 443

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 100/268 (37%), Gaps = 33/268 (12%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP--TTIVVS 529
            +D+ H+ + ++      +          GF        +   +E +  L P     + S
Sbjct: 155 MIDKRHLGVDRLKLFILDEADEM---LSRGF--------KAQIYEVFKKLVPDIQVALFS 203

Query: 530 ATPGSWELEQCQGIIVE---QIIRPT-----GLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           AT     LE     + +    +++       G+    V +     +++ + D        
Sbjct: 204 ATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCDLYETLTIT 263

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             + ++   T++  + LT+ ++ R   V  MH ++   +R  I+R+ R G   VLV  +L
Sbjct: 264 --QSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDL 321

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           L  G+D+ +  LV   D        S  + I  IGR+ R     V +   T     +  +
Sbjct: 322 LARGIDVQQVSLVINYD-----LPCSPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKL 376

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKI 729
            +       Q+E      +  + +K+ I
Sbjct: 377 KKIESYYSTQIE-----EMPLEVIKKNI 399


>gi|225024978|ref|ZP_03714170.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC
           23834]
 gi|224942208|gb|EEG23417.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC
           23834]
          Length = 431

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 71/184 (38%), Gaps = 24/184 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   +E    + ++++     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARRLTKNPEVI--EIEREDNQGKIDEQLFYCDDKNHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M+E L + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCIIFTSTKAMSEQLADELYEKGFAANCLHGDMPQNWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  VLV  ++   G+D+P    V   D  K+         +  IGR  R     + L   
Sbjct: 296 RIKVLVATDVAARGIDVPSITHVINYDLPKQ-----AEDYVHRIGRTGRAGRHGLALTFA 350

Query: 692 TITK 695
            + +
Sbjct: 351 EVNE 354


>gi|126339554|ref|XP_001367967.1| PREDICTED: similar to DEAD-box protein p72 [Monodelphis domestica]
          Length = 772

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 458 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 517

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 518 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 571

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 572 QA------RELIKVLEEANQAINPK 590


>gi|157105113|ref|XP_001648723.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108869079|gb|EAT33304.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 400

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
                ++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 200 ATQVCLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 259

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER EI+++ R 
Sbjct: 260 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRS 314

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 315 GQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINF 369

Query: 690 ADTITKSIQLAIDE 703
             +    I   I++
Sbjct: 370 VKSDDIRILRDIEQ 383


>gi|74835178|dbj|BAE44472.1| Vasa [Botryllus primigenus]
          Length = 687

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 73/186 (39%), Gaps = 15/186 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT      +     + E  +  T          +    +++ +A  + E + + 
Sbjct: 419 HTLMFSATFPDEIQKLAHEFMREDFLFLTVGRVGGACSDVTQTLLQVENAD-KREKLMEL 477

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +    +   R L+ V TKR A+ L  +L +  +    +H + +  ER   + D + GK  
Sbjct: 478 LVDVPETAARTLVFVDTKRNADFLATFLSQEGLPTTSIHGDRQQREREIALTDFKKGKCP 537

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+  ++   GLDIP+   V   D   E         +  IGR  R  N        +  
Sbjct: 538 ILIATSVAARGLDIPKVEHVINYDLPSE-----IDEYVHRIGRTGRCGNLGSATSFYSDD 592

Query: 695 KSIQLA 700
           K+  LA
Sbjct: 593 KNAALA 598


>gi|194068383|dbj|BAG55012.1| vasa [Saccostrea kegaki]
          Length = 422

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 63/168 (37%), Gaps = 12/168 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV-----DPPVEIRSARTQVEDVYDEINLA 578
            T++ SAT      E     + + +    G V     D    +     Q E      ++ 
Sbjct: 162 QTLMFSATFPKEIQEMAGDFLNDYLFLTVGRVGGACTDVTQTVFEVDRQ-EKRSRLCDIL 220

Query: 579 AQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            + G  + L+ V  KR A+ L  YL +       +H +    ER E +RD + GK  VL+
Sbjct: 221 TETGTEKTLVFVEQKRNADFLASYLSQNGFPTTSIHGDRLQAEREEALRDFKTGKAPVLI 280

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             ++   GLDIP    V   D        S    +  IGR  R  N  
Sbjct: 281 ATSVAARGLDIPLVKHVINYD-----LPSSIDEYVHRIGRTGRCGNLG 323


>gi|110681482|emb|CAL25351.1| dead-box helicase [Platanus x acerifolia]
          Length = 285

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 83/223 (37%), Gaps = 23/223 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      D+    F+ +   R  T++ SAT  +      +  +V+ +    G  
Sbjct: 8   RLVDLGFE-----DDIREVFDHFKAQR-QTLLFSATMPTKIQNFARSALVKPVTVNVGRA 61

Query: 555 ----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + Q   +   +    +    +L+    K   +D+ EYL  + +   
Sbjct: 62  GAANLDVIQEVEYVK-QEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAV 120

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER   I   + GK DVLV  ++  +GLD P+   V   D   E       +
Sbjct: 121 AIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE-----IEN 175

Query: 671 LIQTIGRAARNVNSKVILYADTITKS------IQLAIDETTRR 707
            +  IGR  R   + +        +S      ++  + E  +R
Sbjct: 176 YVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQR 218


>gi|163938237|ref|YP_001643121.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229131241|ref|ZP_04260147.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST196]
 gi|163860434|gb|ABY41493.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
 gi|228652232|gb|EEL08163.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST196]
          Length = 538

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIIFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  ++E    ++      + + EK+   I+   L         +  +  
Sbjct: 351 QLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|327284970|ref|XP_003227208.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Anolis
           carolinensis]
          Length = 647

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 330 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 389

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 390 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 443

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 444 QA------RELIKVLEEANQAINPK 462


>gi|326911972|ref|XP_003202329.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
           [Meleagris gallopavo]
          Length = 645

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 324 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 383

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 384 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 437

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 438 QA------RELIKVLEEANQAINPK 456


>gi|194226836|ref|XP_001916530.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Equus
           caballus]
          Length = 791

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 477 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 536

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 537 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 590

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 591 QA------RELIKVLEEANQAINPK 609


>gi|159125027|gb|EDP50144.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus fumigatus
           A1163]
          Length = 674

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 13/172 (7%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   +      L+    + V ++   +  +   VE      +   + D ++
Sbjct: 386 QTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILH 445

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                GL  L+ V TKRMA+ L+++L  +      +H +    ER   +   R G+  +L
Sbjct: 446 THGTSGL-TLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPIL 504

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V   +   GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 505 VATAVAARGLDIPNVTHVINYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 551


>gi|119500998|ref|XP_001267256.1| ATP dependent RNA helicase (Dbp1), putative [Neosartorya fischeri
           NRRL 181]
 gi|134034091|sp|A1CXK7|DED1_NEOFI RecName: Full=ATP-dependent RNA helicase ded1
 gi|119415421|gb|EAW25359.1| ATP dependent RNA helicase (Dbp1), putative [Neosartorya fischeri
           NRRL 181]
          Length = 676

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 13/172 (7%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   +      L+    + V ++   +  +   VE      +   + D ++
Sbjct: 388 QTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILH 447

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                GL  L+ V TKRMA+ L+++L  +      +H +    ER   +   R G+  +L
Sbjct: 448 THGTSGL-TLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPIL 506

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V   +   GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 507 VATAVAARGLDIPNVTHVINYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 553


>gi|70994563|ref|XP_752059.1| ATP dependent RNA helicase (Dbp1) [Aspergillus fumigatus Af293]
 gi|74671260|sp|Q4WP13|DED1_ASPFU RecName: Full=ATP-dependent RNA helicase ded1
 gi|66849693|gb|EAL90021.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus fumigatus
           Af293]
          Length = 674

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 13/172 (7%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   +      L+    + V ++   +  +   VE      +   + D ++
Sbjct: 386 QTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILH 445

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                GL  L+ V TKRMA+ L+++L  +      +H +    ER   +   R G+  +L
Sbjct: 446 THGTSGL-TLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPIL 504

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V   +   GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 505 VATAVAARGLDIPNVTHVINYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 551


>gi|326488617|dbj|BAJ97920.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 510

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 94/262 (35%), Gaps = 32/262 (12%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      D+    F+ +   R  T++ SAT         +  +V+ +I   G  
Sbjct: 232 RLVDLGFE-----DDIREVFDHFKAQR-QTLLFSATMPKKIQNFAKSALVKPVIVNVGRA 285

Query: 555 ----VDPPVEIRSARTQVED--VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
               +D   E+   +   ED  +   +    +    +L+    K   + + EYL  + + 
Sbjct: 286 GAANLDVIQEVEYVK---EDARIIYLLECLQKTPPPVLIFCENKADVDYIHEYLLLKGVE 342

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H      ER   I   + GK DVLV  ++  +GLD P+   V   D   E      
Sbjct: 343 AVAIHGGKDQEERQNAIEFFKNGKKDVLVATDVASKGLDFPDIQHVINYDMPAE-----I 397

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            + +  IGR  R   + +        ++    +D       K L    K  I P      
Sbjct: 398 ENYVHRIGRTGRCGKTGIATTFINKNQTETTLLD------LKHLLKEAKQRIPPV----- 446

Query: 729 IMEVIDPILLEDAATTNISIDA 750
           + E++DP+   +A      +  
Sbjct: 447 LAELVDPLEDAEAIAKESGVKG 468


>gi|195330738|ref|XP_002032060.1| GM23722 [Drosophila sechellia]
 gi|194121003|gb|EDW43046.1| GM23722 [Drosophila sechellia]
          Length = 399

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 199 ATQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 258

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER EI+++ R 
Sbjct: 259 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRA 313

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 314 GQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINF 368

Query: 690 ADTITKSIQLAIDE 703
             +    I   I++
Sbjct: 369 VKSDDIRILRDIEQ 382


>gi|194744201|ref|XP_001954583.1| GF18341 [Drosophila ananassae]
 gi|194903996|ref|XP_001980981.1| GG24917 [Drosophila erecta]
 gi|195055753|ref|XP_001994777.1| GH14195 [Drosophila grimshawi]
 gi|195110945|ref|XP_002000040.1| GI24868 [Drosophila mojavensis]
 gi|195391782|ref|XP_002054539.1| GJ24512 [Drosophila virilis]
 gi|195499068|ref|XP_002096791.1| GE25867 [Drosophila yakuba]
 gi|190627620|gb|EDV43144.1| GF18341 [Drosophila ananassae]
 gi|190652684|gb|EDV49939.1| GG24917 [Drosophila erecta]
 gi|193892540|gb|EDV91406.1| GH14195 [Drosophila grimshawi]
 gi|193916634|gb|EDW15501.1| GI24868 [Drosophila mojavensis]
 gi|194152625|gb|EDW68059.1| GJ24512 [Drosophila virilis]
 gi|194182892|gb|EDW96503.1| GE25867 [Drosophila yakuba]
          Length = 399

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 199 ATQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 258

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER EI+++ R 
Sbjct: 259 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRA 313

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 314 GQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINF 368

Query: 690 ADTITKSIQLAIDE 703
             +    I   I++
Sbjct: 369 VKSDDIRILRDIEQ 382


>gi|48136057|ref|XP_393356.1| PREDICTED: eukaryotic initiation factor 4A-III-like isoform 1 [Apis
           mellifera]
          Length = 403

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               ++VSAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 203 ATQVVLVSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 262

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 263 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRS 317

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 318 GQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVSINF 372

Query: 690 ADTITKSIQLAIDE 703
             T    I   I++
Sbjct: 373 VKTDDIRILRDIEQ 386


>gi|238491700|ref|XP_002377087.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus flavus
           NRRL3357]
 gi|220697500|gb|EED53841.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus flavus
           NRRL3357]
          Length = 676

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 13/172 (7%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   +      L+    + V ++   +  +   VE      +   + D ++
Sbjct: 385 QTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILH 444

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                GL  L+ V TKRMA+ L+++L  +      +H +    ER   +   R G+  +L
Sbjct: 445 THGTSGL-TLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPIL 503

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V   +   GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 504 VATAVAARGLDIPNVTHVINYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 550


>gi|145256950|ref|XP_001401571.1| ATP-dependent RNA helicase ded1 [Aspergillus niger CBS 513.88]
 gi|134034089|sp|A2QI25|DED1_ASPNC RecName: Full=ATP-dependent RNA helicase ded1
 gi|134058481|emb|CAL00690.1| unnamed protein product [Aspergillus niger]
          Length = 678

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 13/172 (7%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   +      L+    + V ++   +  +   VE      +   + D ++
Sbjct: 385 QTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILH 444

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                GL  L+ V TKRMA+ L+++L  +      +H +    ER   +   R G+  +L
Sbjct: 445 THGTSGL-TLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPIL 503

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V   +   GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 504 VATAVAARGLDIPNVTHVINYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 550


>gi|169773691|ref|XP_001821314.1| ATP-dependent RNA helicase ded1 [Aspergillus oryzae RIB40]
 gi|91206555|sp|Q2UGK3|DED1_ASPOR RecName: Full=ATP-dependent RNA helicase ded1
 gi|83769175|dbj|BAE59312.1| unnamed protein product [Aspergillus oryzae]
          Length = 675

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 13/172 (7%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   +      L+    + V ++   +  +   VE      +   + D ++
Sbjct: 384 QTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILH 443

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                GL  L+ V TKRMA+ L+++L  +      +H +    ER   +   R G+  +L
Sbjct: 444 THGTSGL-TLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPIL 502

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V   +   GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 503 VATAVAARGLDIPNVTHVINYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 549


>gi|301757526|ref|XP_002914626.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DDX17-like [Ailuropoda melanoleuca]
          Length = 775

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 459 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 518

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 519 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 572

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 573 QA------RELIKVLEEANQAINPK 591


>gi|73969107|ref|XP_531736.2| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 1 [Canis
           familiaris]
          Length = 664

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 350 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 409

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 410 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 463

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 464 QA------RELIKVLEEANQAINPK 482


>gi|73969105|ref|XP_860607.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 10 [Canis
           familiaris]
          Length = 655

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 341 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 400

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 401 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 454

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 455 QA------RELIKVLEEANQAINPK 473


>gi|303237011|ref|ZP_07323583.1| transcription-repair coupling factor [Prevotella disiens
           FB035-09AN]
 gi|302482791|gb|EFL45814.1| transcription-repair coupling factor [Prevotella disiens
           FB035-09AN]
          Length = 1194

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 86/233 (36%), Gaps = 15/233 (6%)

Query: 159 QLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217
            L+K I  +  +   L G+  S      A + +  Q+  + +  +   A   Y++ K   
Sbjct: 56  ALMKTIEEKSVRTVFLQGLLASATPMFFASIAKRWQKTMLFVLNDNDEAGYFYNDLKTIA 115

Query: 218 PHNA-------VEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN 270
                      V +F S Y       Y  R       E    E + R+       +  + 
Sbjct: 116 MPEGGKGKVAEVLFFPSSYRRA--VKYGQRD---AGNEILRTEVLSRLSVIGEEKVKAKL 170

Query: 271 DCIVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
              +V+  S +  +  +     +  + + +G +++  E   +L    +++ D     G F
Sbjct: 171 PLYIVTEPSALAELVVAKHKLDERTLSVSLGQTMDLTETEKTLRSYGFQQTDYVYEPGQF 230

Query: 330 RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
            + G  ++++ S   ++ +R+  FGND++ I  F   T       + ++I   
Sbjct: 231 AIRGSILDVY-SFSSELPYRIDFFGNDVDTIRTFEVETQLSKDKKDKVEIVPE 282



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     I+R       P++   +    E + D IN    +  
Sbjct: 784 TLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEISTFSAETIADAINFEMSRNG 843

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++           +L   + +     R    H ++K  E  EII       +DVL+   +
Sbjct: 844 QVFFVNDRIANLPELASLIKKYVPDCRVAIGHGQMKPEELEEIIIGFMNHDYDVLLSTTI 903

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I DA K G     + L Q  GR  R+ N K   Y   +      A+
Sbjct: 904 VENGIDISNANTIIINDAHKFGL----SDLHQMRGRVGRS-NKKAFCY---LLAPPLAAL 955

Query: 702 DETTRRREKQLE 713
           +   RRR + LE
Sbjct: 956 NPDARRRLEALE 967



 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 6/113 (5%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E        AA  G ++ + V T     +  +   + L    + V Y+       + 
Sbjct: 666 GKTEVAVRAAFKAATDGKQVAVLVPTTVLAFQHYQTFKKRLKNMPVTVDYLSRARTAKQT 725

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            ++I DL  GK D+LVG + L+ + +   + GL+ I +  K G + +K  L Q
Sbjct: 726 KQVITDLSEGKIDILVGTHKLISKSVKWKDIGLLIIDEEQKFG-VSTKEKLRQ 777


>gi|229171082|ref|ZP_04298680.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
 gi|228612412|gb|EEK69636.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
          Length = 530

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  ++E    ++      + + EK+   I+   L         +  +  
Sbjct: 351 QLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|227510665|ref|ZP_03940714.1| ATP-dependent DNA helicase/translocase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190317|gb|EEI70384.1| ATP-dependent DNA helicase/translocase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 442

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 99/225 (44%), Gaps = 28/225 (12%)

Query: 510 NRPLRFEEWNCLRPT--TIVVSATPGS---WELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           N  L +   N ++P    + ++ATP      ++++ +  +    IR  G + P V+I   
Sbjct: 223 NDMLHYAVQNAIKPGGGILYLTATPDDVLMHKIKRKEISVSYLPIRYHGHLLPTVKI--V 280

Query: 565 RTQ-----VED------VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           + Q     V+       +   IN   +Q  R LL V   R    ++  L + NI   Y+ 
Sbjct: 281 KNQHLKRLVDQGRLPKSILQMINRLVKQKQRFLLFVPRIRDLTLVSSALEKANINCTYLT 340

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
                 +R+E +  +R    D L+   +L  G+  P    V +L AD E F  S ++L+Q
Sbjct: 341 VYSADPQRLEKVTAMRSQAVDFLITTTILERGVTFPGID-VMVLKADDEVF--SASALVQ 397

Query: 674 TIGRAARNVNSK---VILYADTITKSIQ---LAIDETTRR-REKQ 711
             GR  RN       VILY +T +K+I+     I E  RR RE +
Sbjct: 398 IAGRVGRNSARPTGQVILYCETKSKTIKSCDRQIKEMNRRAREIK 442


>gi|224060117|ref|XP_002300045.1| predicted protein [Populus trichocarpa]
 gi|222847303|gb|EEE84850.1| predicted protein [Populus trichocarpa]
          Length = 791

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 72/183 (39%), Gaps = 14/183 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           R  T++ +AT      +    ++V  +    G VD  V  +S    VE +         +
Sbjct: 342 RRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQYVELLAPLEKHRRLE 401

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  + + G +I++   TK+M + L+  L  R      +H +    ER  ++   R G+ 
Sbjct: 402 QILRSQESGSKIIIFCSTKKMCDQLSRNLT-RQFGAAAIHGDKSQSERDYVLSQFRTGRS 460

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDI +  +V   D     F       +  IGR  R   + V       
Sbjct: 461 PILVATDVAARGLDIKDIRVVINYD-----FPTGVEDYVHRIGRTGRAGATGVAYTFFGD 515

Query: 694 TKS 696
             +
Sbjct: 516 QDA 518


>gi|121601761|ref|YP_989161.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120613938|gb|ABM44539.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain
           protein [Bartonella bacilliformis KC583]
          Length = 471

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 79/232 (34%), Gaps = 30/232 (12%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             R   L E    L     N   R  +  C    T + SAT      E   G++ E +  
Sbjct: 164 RSRFLVLDEADRMLDMGFINDVRRIAKLLCKEHQTALFSATMPKEIKELANGLLNEPV-- 221

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAE 596
                   +E+    T   ++  ++    +   R              +++ + TK  A+
Sbjct: 222 -------KIEVVPQGTTAVEITQKLYCVPKNEKRNILNRLLVNPDLISVIVFIRTKHGAD 274

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            +T YL      V  +H       R   ++  R G   VLV  ++   G+DIP    V  
Sbjct: 275 AITRYLKNMGHAVATIHGNKSQNARQSALKAFREGSVKVLVATDIAARGIDIPGVSHVIN 334

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
            D           S +  IGR  RN  S   + L+ +   +S   A++   R
Sbjct: 335 YD-----LPEDAESYVHRIGRTGRNGASGDAITLFDEESEESRLRAVERIIR 381


>gi|225452412|ref|XP_002273908.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1226

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 68/178 (38%), Gaps = 16/178 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV---------EIRSARTQVEDVY 572
           R  T++ +AT      +    ++V  +    G VD  V         E+     +     
Sbjct: 339 RRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEK-HKRL 397

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I  + + G +I++   TK+M + L   L  R      +H +    ER  ++   R G+
Sbjct: 398 EQILRSQEPGSKIIIFCSTKKMCDQLARNLT-RPFGAAAIHGDKSQGERDYVLNQFRTGR 456

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
             VLV  ++   GLDI +  +V   D     F       +  IGR  R   + V    
Sbjct: 457 SPVLVATDVAARGLDIKDIRVVINYD-----FPTGVEDYVHRIGRTGRAGATGVAYTF 509


>gi|148613856|ref|NP_001091974.1| probable ATP-dependent RNA helicase DDX17 isoform 3 [Homo sapiens]
          Length = 731

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 415 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 474

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 475 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 528

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 529 QA------RELIKVLEEANQAINPK 547


>gi|119580652|gb|EAW60248.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_h [Homo
           sapiens]
          Length = 547

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 233 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 292

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 293 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 346

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 347 QA------RELIKVLEEANQAINPK 365


>gi|38201710|ref|NP_006377.2| probable ATP-dependent RNA helicase DDX17 isoform 1 [Homo sapiens]
 gi|110611789|gb|AAH00595.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
          Length = 729

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 415 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 474

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 475 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 528

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 529 QA------RELIKVLEEANQAINPK 547


>gi|15234166|ref|NP_195063.1| DEAD-box protein abstrakt, putative [Arabidopsis thaliana]
 gi|75337897|sp|Q9SZB4|RH43_ARATH RecName: Full=Putative DEAD-box ATP-dependent RNA helicase 43
 gi|4490304|emb|CAB38795.1| putative protein [Arabidopsis thaliana]
 gi|7270285|emb|CAB80054.1| putative protein [Arabidopsis thaliana]
 gi|332660816|gb|AEE86216.1| putative DEAD-box ATP-dependent RNA helicase 43 [Arabidopsis
           thaliana]
          Length = 542

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 83/236 (35%), Gaps = 23/236 (9%)

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542
           +             L + GF      D+    F+ +   R  T++ SAT  +        
Sbjct: 251 LDACRLLTLDEADRLVDLGFE-----DDIRHVFDHFKSQR-QTLLFSATMPAKIQIFATS 304

Query: 543 IIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
            +V+ +    G      +D   E+   + Q   +   +    +    +L+    K   +D
Sbjct: 305 ALVKPVTVNVGRAGAANLDVIQEVEYVK-QEAKIVYLLECLQKTTPPVLIFCENKADVDD 363

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           + EYL  + +    +H      +R   I   + GK DVLV  ++  +GLD P+   V   
Sbjct: 364 IHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINY 423

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS------IQLAIDETTRR 707
           D   E       + +  IGR  R   + +        +S      ++  + E  +R
Sbjct: 424 DMPGE-----IENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQR 474


>gi|47209111|emb|CAF90069.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 415

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 215 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 274

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 275 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 329

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 330 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 384

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 385 VKNDDIRILRDIEQ 398


>gi|145506835|ref|XP_001439378.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406562|emb|CAK71981.1| unnamed protein product [Paramecium tetraurelia]
          Length = 442

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 85/246 (34%), Gaps = 36/246 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ +   L           I+ +   +  R     + GF      +     F+
Sbjct: 192 TPGRLLDFMKDGYPL---------KSITQVVLDEADRM---LDMGFE-----EQITQIFQ 234

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQG---------IIVEQIIRPTGLVDPPVEIRSARTQ 567
           +    R  T+  SAT      +              I EQ +     +   + I     +
Sbjct: 235 KVRKER-QTLFFSATWPKEVQKLANFLCNENPNLLQIGEQGLSVNKNIQQEIIIV-YENK 292

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            E   +       +G ++L+    K   + L   L    ++ RY+H ++K  ER  I+ D
Sbjct: 293 FEQFVELAERL--KGQKLLIFCQKKIDTQKLEYRLSLHGLKARYLHGDLKQAERDYIMED 350

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-V 686
            + G  + L+  NL   GLDI +  +V   D     F  +    I  IGR  R       
Sbjct: 351 FKTGAINCLITTNLASRGLDISDVDVVINYD-----FPDNIEDYIHRIGRTGRAGKKGLA 405

Query: 687 ILYADT 692
           I + + 
Sbjct: 406 ISFFEP 411


>gi|170736938|ref|YP_001778198.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169819126|gb|ACA93708.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 483

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/316 (17%), Positives = 104/316 (32%), Gaps = 27/316 (8%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLRFEEWNCLRPTTIVVS 529
            +D +     Q   +          + + GF   L +     P +          T++ S
Sbjct: 135 LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAK--------RQTLLFS 186

Query: 530 ATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLR 584
           AT      +   GI+   V+  + P       ++  +     + +       +A  +   
Sbjct: 187 ATFSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNKPDLFMHLVAQNRWEH 246

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V T+   + L   L +    V  +H +     R+  +   + G+  +LV  ++   
Sbjct: 247 ALVFVKTRNGVDYLALMLEKAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAAR 306

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           GLDI +  LV  +D             +  IGR  R   S V +            AI+ 
Sbjct: 307 GLDIDDLPLVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEA 361

Query: 704 TTR---RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG 760
             R   RRE++     +H   P++      E+I             ++   + +  KK  
Sbjct: 362 LIRQTLRREEEPGFEAEHR-VPET--SATGEIIKKPKKPKKPKVAQAVPVGKQASGKKPP 418

Query: 761 KAHLKSLRKQMHLAAD 776
               +  RK +   A 
Sbjct: 419 AQGGEGKRKAVAQHAK 434


>gi|166014135|gb|ABY77970.1| vasa [Thunnus orientalis]
          Length = 644

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 11/139 (7%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V   S R Q+ D+            R ++ V TKR A+ +  +L +  +    +H + +
Sbjct: 441 QVTKFSKREQLLDLLKTTGT-----ERTMVFVETKRQADFIATFLCQEKVPTTSIHGDRE 495

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + + D R GK  VLV  ++   GLDIP+   V   D        +    +  IGR
Sbjct: 496 QREREQALADFRSGKCPVLVATSVAARGLDIPDVQHVVNFD-----LPNNIDEYVHRIGR 550

Query: 678 AARNVNSK-VILYADTITK 695
             R  N+   + + D    
Sbjct: 551 TGRCGNTGRAVSFYDPDAD 569


>gi|254249566|ref|ZP_04942886.1| Helicase [Burkholderia cenocepacia PC184]
 gi|124876067|gb|EAY66057.1| Helicase [Burkholderia cenocepacia PC184]
          Length = 505

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/316 (17%), Positives = 104/316 (32%), Gaps = 27/316 (8%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLRFEEWNCLRPTTIVVS 529
            +D +     Q   +          + + GF   L +     P +          T++ S
Sbjct: 157 LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAK--------RQTLLFS 208

Query: 530 ATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLR 584
           AT      +   GI+   V+  + P       ++  +     + +       +A  +   
Sbjct: 209 ATFSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNKPDLFMHLVAQNRWEH 268

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V T+   + L   L +    V  +H +     R+  +   + G+  +LV  ++   
Sbjct: 269 ALVFVKTRNGVDYLALMLEKAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAAR 328

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           GLDI +  LV  +D             +  IGR  R   S V +            AI+ 
Sbjct: 329 GLDIDDLPLVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEA 383

Query: 704 TTR---RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG 760
             R   RRE++     +H   P++      E+I             ++   + +  KK  
Sbjct: 384 LIRQTLRREEEPGFEAEHR-VPET--SATGEIIKKPKKPKKPKVAQAVPVGKQASGKKPP 440

Query: 761 KAHLKSLRKQMHLAAD 776
               +  RK +   A 
Sbjct: 441 AQGGEGKRKAVAQHAK 456


>gi|46136549|ref|XP_389966.1| hypothetical protein FG09790.1 [Gibberella zeae PH-1]
          Length = 657

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 6/138 (4%)

Query: 568 VEDVYDEINLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + D+     +A  +G    L+  +      +LT+   +     RY+  E   +ER + + 
Sbjct: 279 INDITVRSWMAKAEGRESTLVFCVDVAHVVELTDRFRQHGFDARYVTGETPKVERGQTLD 338

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R G+F VLV   +  EG DIP    V +    +     S+  L+Q IGR  R    K 
Sbjct: 339 SFRKGEFPVLVNCGVFTEGTDIPNIDCVILGRPTR-----SRNLLVQMIGRGMRLHPGKK 393

Query: 687 ILYADTITKSIQLAIDET 704
             +   +  S+   I  T
Sbjct: 394 NCHIIDLVSSLDTGIVTT 411



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ------RPAIVMAPNKILA 206
           Q   I  +L  + + +K   +   TGSGKT    ++IE +       +  +++A  + L 
Sbjct: 56  QEECIDSVLNSLQNGQKRVGVSLATGSGKTVIFTQLIERIPPASENAQQTLILAHRRELV 115

Query: 207 AQLYSEFKNFFPHNAVE 223
            Q  +  +  +P+  +E
Sbjct: 116 EQAANHCQRQYPNKKIE 132


>gi|90075746|dbj|BAE87553.1| unnamed protein product [Macaca fascicularis]
          Length = 396

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 233 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKGQPERDWVLNEFRSGKAPILIA 292

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 293 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 346

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 347 QA------RELIKVLEEANQAINPK 365


>gi|118783118|ref|XP_312776.3| AGAP003089-PA [Anopheles gambiae str. PEST]
 gi|116129059|gb|EAA08469.4| AGAP003089-PA [Anopheles gambiae str. PEST]
          Length = 400

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 200 ATQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 259

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LTE + E N  V  MH ++   ER EI+++ R 
Sbjct: 260 LYDTLTIT-----QAVIFCNTRRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRS 314

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 315 GQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINF 369

Query: 690 ADTITKSIQLAIDE 703
             +    I   I++
Sbjct: 370 VKSDDIRILRDIEQ 383


>gi|296270955|ref|YP_003653587.1| DEAD/DEAH box helicase domain-containing protein [Thermobispora
           bispora DSM 43833]
 gi|296093742|gb|ADG89694.1| DEAD/DEAH box helicase domain protein [Thermobispora bispora DSM
           43833]
          Length = 618

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 95/255 (37%), Gaps = 31/255 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         V++ H+ + QI+ +   +  R     + GF LP       L  E
Sbjct: 136 TPGRLLD--------LVNQKHLDLSQIAILVLDEADRM---LDLGF-LPDIERIIKLLPE 183

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE------D 570
                +  T++ SAT     +   +  +         + +   E +   TQ        D
Sbjct: 184 -----KRQTMLFSATMPGEIVALSRRYLNRPTHIRAEIAEIEAETKPRTTQFVYRTHRMD 238

Query: 571 VYDEINLAAQQGLRIL--LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             + +    Q     L  +   TKR  + +   L +R   V  +H ++   +R + +R  
Sbjct: 239 KIEILARVLQSTELTLAMVFCETKRACDMVANQLRDRGFAVAAVHGDLSQSQREQALRAF 298

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-I 687
           R GK +VLV  ++   G+D+ +   V   D       + + + I  IGR  R   S V I
Sbjct: 299 RNGKINVLVATDVAARGIDVDDVTHVINYD-----LPQDEKTYIHRIGRTGRAGRSGVAI 353

Query: 688 LYADTITKSIQLAID 702
            + +    +  + I+
Sbjct: 354 TFVEWTELARWMLIN 368


>gi|209809352|ref|YP_002264890.1| putative ATP-dependent RNA helicase RhlE [Aliivibrio salmonicida
           LFI1238]
 gi|208010914|emb|CAQ81319.1| putative ATP-dependent RNA helicase RhlE [Aliivibrio salmonicida
           LFI1238]
          Length = 442

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/323 (18%), Positives = 111/323 (34%), Gaps = 64/323 (19%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L + I  +++         + ++  +   +  R  +L   GF   L + +D  P  
Sbjct: 157 TPGRLLDLISSNAI--------KLDKVKTLVLDEADRMLSL---GFTEELSALLDLLP-- 203

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYD 573
                  +  T++ SAT              EQ+      L++ P+EI   + Q  D   
Sbjct: 204 ------KQKQTLLFSAT------------FPEQVQTLTQELLNDPIEI---QVQSADAST 242

Query: 574 EIN--LAAQQGLRI---------------LLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
            +       +G +                L+ V  K   E L + L +R I     H + 
Sbjct: 243 LVQRVFTVNKGEKTALLAHLIKQNEWRQALIFVNAKNSCEHLADKLSKRGITAEVFHGDK 302

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
               R  I+   +LG+ +VL+  N+   GLDI +  +V   D       RS +  +  IG
Sbjct: 303 GQGARTRILEAFKLGEIEVLIATNIAARGLDIEKLPVVINFD-----LPRSPSDYMHRIG 357

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           R+ R     + L            I E  ++ + +LE  +        V E + + +  +
Sbjct: 358 RSGRAGEVGLALSLIDHEDYHHFKIIE--KKNKIRLEREEVEGFE---VDEAVSDSLSDV 412

Query: 737 LLEDAATTNISIDAQQLSLSKKK 759
               A         ++   S  +
Sbjct: 413 EKPMAKPEGTGKKKRKNRASADE 435


>gi|4126714|dbj|BAA36710.1| DEAD-Box Protein [Ciona intestinalis]
          Length = 669

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 67/182 (36%), Gaps = 14/182 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR--------PTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      +     + E  +             V   V     + +   + + I
Sbjct: 401 HTLMFSATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWKDKRSKLLELI 460

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +   R L+ V TKR A+ L   L + +     +H +    +R + +RD +L    +
Sbjct: 461 ADVNETKSRTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQQDREQALRDFKLAVCPI 520

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTIT 694
           LV  ++   GLDIP+   V   D  +E         +  IGR  R  N  +   + D   
Sbjct: 521 LVATSVAARGLDIPKVEHVINYDMPRE-----IDEYVHRIGRTGRCGNLGRATTFFDNKK 575

Query: 695 KS 696
            +
Sbjct: 576 DA 577


>gi|74096143|ref|NP_001027593.1| DEAD-Box Protein [Ciona intestinalis]
 gi|4126716|dbj|BAA36711.1| DEAD-Box Protein [Ciona intestinalis]
          Length = 659

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 67/182 (36%), Gaps = 14/182 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR--------PTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      +     + E  +             V   V     + +   + + I
Sbjct: 391 HTLMFSATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWKDKRSKLLELI 450

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +   R L+ V TKR A+ L   L + +     +H +    +R + +RD +L    +
Sbjct: 451 ADVNETKSRTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQQDREQALRDFKLAVCPI 510

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTIT 694
           LV  ++   GLDIP+   V   D  +E         +  IGR  R  N  +   + D   
Sbjct: 511 LVATSVAARGLDIPKVEHVINYDMPRE-----IDEYVHRIGRTGRCGNLGRATTFFDNKK 565

Query: 695 KS 696
            +
Sbjct: 566 DA 567


>gi|310792073|gb|EFQ27600.1| hypothetical protein GLRG_02744 [Glomerella graminicola M1.001]
          Length = 538

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 6/140 (4%)

Query: 566 TQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
            QV ++     LA   G +  L+  +       LT+   +     R++  +   +ER EI
Sbjct: 143 DQVNEITVRSWLAKASGRKSTLVFCVDLAHVGGLTQAFRKHGYDARFVTGDTPKVERSEI 202

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +   R G+F VLV   +  EG DIP    V +    +     S+  L+Q IGR  R    
Sbjct: 203 LEAFRKGEFPVLVNCGVFTEGTDIPNIDCVVLARPTR-----SRNLLVQMIGRGMRLHKG 257

Query: 685 KVILYADTITKSIQLAIDET 704
           K   +   +  S++  I  T
Sbjct: 258 KTDCHVIDMVSSLETGIVTT 277


>gi|159463464|ref|XP_001689962.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283950|gb|EDP09700.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 567

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 95/258 (36%), Gaps = 33/258 (12%)

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGSW 535
            V + Q+S +   +  R     + GF        R L        +  T+  SAT P   
Sbjct: 266 QVRLQQVSYLVLDEADRM---LDMGFEPQIQRIVRTLP------RQRQTLFFSATWPREV 316

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ----------GLRI 585
           +    Q ++ + +    G V+  +    + TQ   V + ++    +          G RI
Sbjct: 317 KHIASQFVVNQTVHVFIGGVEEKLVANKSITQYVSVVNGMHEKFAELAKIIRAKPPGTRI 376

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   TKRM + L+ Y   R  R   +H + K  ER  +++  + G+  +LV  ++   G
Sbjct: 377 IIFCTTKRMCDQLS-YQMGREFRSAAIHGDKKQSERDYVLQAFKDGRTPILVATDVAARG 435

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LDIP    V   D     F       I  IGR  R   +    Y     +  + A     
Sbjct: 436 LDIPNVAAVVNFD-----FPTGTEDYIHRIGRTGRAGATGE-SYTFMSQEDAKHA----- 484

Query: 706 RRREKQLEHNKKHNINPQ 723
            R   Q+       I+P+
Sbjct: 485 -RDLMQVMREAGQTISPE 501


>gi|323140806|ref|ZP_08075722.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium sp.
           YIT 12067]
 gi|322414722|gb|EFY05525.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium sp.
           YIT 12067]
          Length = 529

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 97/261 (37%), Gaps = 23/261 (8%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEI--RSARTQVEDVYDEINLA 578
            T++ SAT   P     ++         I    L  P +E      + ++E +   ++  
Sbjct: 180 QTLLFSATMPRPILSLTKKYMKAPKNVTISKEELTVPLIEQYYFETKDKIEGLCRLLDAE 239

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                ++++   TK+  +DL+  L  R      +H ++   +R  +++  R G  DVL+ 
Sbjct: 240 IDG--KLIIFCRTKKGVDDLSIALSSRGYMAEGLHGDLSQNQRDRVMKKFREGAVDVLIA 297

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   G+D+     V   D       +   S +  IGR  R  N+ V +   T  +  Q
Sbjct: 298 TDVAARGIDVDNITHVINFD-----IPQDPESYVHRIGRTGRAGNTGVAMTFITPREFRQ 352

Query: 699 -LAIDETTR----RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI----- 748
              I+ T +    RR+     N         +  K+  V++     D      S+     
Sbjct: 353 LKLIERTVKTKIQRRQLPTAANVIER-QRDQIISKMQTVLELNAYHDYMPIAESLLDDYS 411

Query: 749 DAQQLSLSKKKGKAHLKSLRK 769
             +  + + K  +  +K+L  
Sbjct: 412 AEEVAAAALKLMQEGIKALEA 432


>gi|118082784|ref|XP_416260.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
           [Gallus gallus]
          Length = 655

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 334 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 393

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 394 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 447

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 448 QA------RELIKVLEEANQAINPK 466


>gi|322796814|gb|EFZ19232.1| hypothetical protein SINV_01003 [Solenopsis invicta]
          Length = 1201

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++  + ++ V TKR  +D+T+ +     +   +H +    ER  ++++ R GK  +LV 
Sbjct: 356 TEKENKTIIFVETKRKVDDITKNIRREGWQAVSIHGDKNQQERDHVLQEFRNGKAPILVA 415

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     F  S    I  IGR  R   +    YA   T +++
Sbjct: 416 TDVAARGLDVDDVKYVINFD-----FPSSSEDYIHRIGRTGRKRQTGTA-YAFFTTHNMK 469

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A D        ++      N+NP+
Sbjct: 470 HAGD------LIEVLREAGQNVNPR 488



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 87/241 (36%), Gaps = 35/241 (14%)

Query: 496  TLAEYGFRLPSCMDNRPLRFEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
             + + GF         P   +    +RP   T++ SAT         +  + + I    G
Sbjct: 863  RMLDMGFE--------PQIRKIVEQIRPDRQTLMWSATWPKEVRNLAEEFLTDYIQINIG 914

Query: 554  LVD-----------PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
             +               E     +++  + +EI+   +   + ++ V TKR  +D+T  +
Sbjct: 915  SLQLAANHNILQIVDVCEEYEKESKLMKLLEEISNEPEN--KTIIFVETKRKVDDITRAI 972

Query: 603  YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
                 +   +H +    ER  ++   R  +  +LV  ++   GLD+ +   V  LD    
Sbjct: 973  NRYGWQAIGIHGDKSQQERDYVLNQFRNSRSAILVATDVAARGLDVEDVKFVINLD---- 1028

Query: 663  GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
             +  +    +  IGR  R+  +    YA     +   A D        Q+    K  +NP
Sbjct: 1029 -YPSNSEDYVHRIGRTGRSQRTGTA-YAFFTPGNAHKAGD------LIQVLEEAKQVVNP 1080

Query: 723  Q 723
            +
Sbjct: 1081 K 1081


>gi|157126121|ref|XP_001654546.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108873390|gb|EAT37615.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 741

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 14/171 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            TI+ SAT  PG   L Q       Q+      +  T  V   +E+     +   V + +
Sbjct: 504 QTIMTSATWPPGVRRLAQSYMSNPVQVYVGTLDLAATHTVTQQIEVIDEEDKYMRVMNFV 563

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   ++++    K  A+DL+       I    +H + +  +R + + D++ G   V
Sbjct: 564 TNMGPSD-KVIIFCGRKTRADDLSSEFVLSGINCTSLHGDREQADREQALEDIKSGDVRV 622

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           L+  ++   GLDI +   V   D     F R+    +  +GR  R   S V
Sbjct: 623 LIATDVASRGLDIEDISHVVNYD-----FPRNIEEYVHRVGRTGRAGRSGV 668


>gi|326519741|dbj|BAK00243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 649

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 15/189 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           +  T++ +AT      +    ++   +    G  D  V  +S    VE           D
Sbjct: 338 KRQTLMFTATWPREVRKIASDLLTNPVQVNIGNTDELVANKSITQYVEVTTSMEKGRRLD 397

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I    + G ++++   TKRM + L+  L  R      +H +    ER  ++ + R G+ 
Sbjct: 398 QILRQQEPGSKVIIFCSTKRMCDQLSRNLS-RQYGASAIHGDKSQAERDSVLSEFRTGRC 456

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLD+ +  +V   D     F       +  IGR  R   S  I Y    
Sbjct: 457 PILVATDVAARGLDVKDIRVVVNYD-----FPTGVEDYVHRIGRTGRAGASG-IAYTFFC 510

Query: 694 TKSIQLAID 702
            +  + A D
Sbjct: 511 DQDSKYASD 519


>gi|302138848|gb|ADK94762.1| vasa [Clarias gariepinus]
          Length = 681

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 77/213 (36%), Gaps = 22/213 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWN--CLRPTTIVVSATPGSWELEQCQGIIVEQIIR--- 550
            + + GF      D R L          +  T++ SAT            + E  +    
Sbjct: 408 RMLDMGFE----TDMRKLVSSPGMPPKEQRQTLMFSATYPEDIQRLAADFLKENYLFLVV 463

Query: 551 -----PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
                    ++  +   +  ++ E + + +        R ++ V TKR A+ +  +L + 
Sbjct: 464 GVVGGACSDIEQLIIQVTRYSKREQLLEMLKTTGD--ERTMVFVETKRSADFIATFLCQE 521

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +    +H + +  ER + + D R GK  VLV  ++   GLDI     V   D  K    
Sbjct: 522 KVPTTSIHGDREQREREKALSDFRTGKCPVLVATSVAARGLDIEHVQHVVNFDLPK---- 577

Query: 666 RSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            S    +  IGR  R  N+   + + D    + 
Sbjct: 578 -SIEEYVHRIGRTGRCGNTGRAVSFFDPEPDAH 609


>gi|156848475|ref|XP_001647119.1| hypothetical protein Kpol_1036p3 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160385736|sp|A7TEF4|FAL1_VANPO RecName: Full=ATP-dependent RNA helicase FAL1
 gi|156117803|gb|EDO19261.1| hypothetical protein Kpol_1036p3 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 399

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 84/210 (40%), Gaps = 25/210 (11%)

Query: 515 FEEWNCL--RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSA 564
           ++ +  L      +VVSAT     LE  +  + + +        I   G+    V +   
Sbjct: 190 YDIFTKLPAACQVVVVSATMSKDILEVTKKFMSDPVKILVKRDEISLEGIKQYYVNVEKE 249

Query: 565 RTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
             + +   D+YD + +      + ++   TK+  + L+  L + N  V  MH ++K  +R
Sbjct: 250 DWKFDTLCDLYDSLTIT-----QCVIFCNTKKKVDWLSAKLTQSNFAVVSMHGDMKQEDR 304

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            +++ D R G   VL+  ++   G+D+ +  LV   D           + I  IGR+ R 
Sbjct: 305 NKVMSDFRSGHSRVLISTDVWARGIDVQQVSLVINYD-----IPEIMENYIHRIGRSGRF 359

Query: 682 VNSKV-ILYADTITKSIQLAIDETTRRREK 710
               V I +  +   S    I E   R + 
Sbjct: 360 GRKGVAINFITSSDLSKMKEI-EKYYRIKI 388


>gi|198282005|ref|NP_001095463.1| probable ATP-dependent RNA helicase DDX17 [Bos taurus]
 gi|154757449|gb|AAI51649.1| DDX17 protein [Bos taurus]
 gi|296487004|gb|DAA29117.1| DEAD box polypeptide 17 [Bos taurus]
          Length = 650

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 396 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 449

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 450 QA------RELIKVLEEANQAINPK 468


>gi|94986749|ref|YP_594682.1| transcription-repair coupling factor [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730998|emb|CAJ54361.1| transcription-repair coupling factor (superfamily II helicase)
           [Lawsonia intracellularis PHE/MN1-00]
          Length = 1155

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 64/403 (15%), Positives = 134/403 (33%), Gaps = 53/403 (13%)

Query: 250 SINEQIDRMRHSATRSLL-ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKEL 308
           S++++    R +A  +L   +   ++++  + +     ++ +   ++QL +G+ +    +
Sbjct: 91  SLSKEGWAERLAALYALRYGKVQGLILTIDNLLPKEVPLDFFDNQVIQLSVGEELSPDII 150

Query: 309 LSSLVKQQYKRQDIGIIRGTFRVCGDSIEI-FPSHLEDVAWRVSMFGNDIEEISEFYPLT 367
           L   +   Y R  +    G     GD  +I  P +      R+  FG  +EEI  F PLT
Sbjct: 151 LEQAITWGYDRVSMVSNPGEVSRRGDIFDIMSPGY--HYPLRLDFFGETLEEIRFFDPLT 208

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
            +    ++   I       +        +  I+              +LL+   + +   
Sbjct: 209 QRSKGYIDNAIILPVYPVRSGTEY----IATIESYW----------NKLLKENVITENEH 254

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPG---EPPPTLFEYIPEDSLLFVDESHVTIPQIS 484
           Y L  L        +           PG   E   T+ +++ +D +  +   H     ++
Sbjct: 255 YSLFRLLEQKDFSLL-----------PGCCYENATTIEQWVNKDKVWILPSLHEAEDILT 303

Query: 485 GMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544
            M      R     E GF        +PL     N L+   +   +T    E        
Sbjct: 304 SMENSWNDRLKR--ESGFI-------QPLDLAIRNTLQVKELWCQSTIVHTESLDIDIDD 354

Query: 545 VEQIIR-PTGLVDPPVEIRSA----RTQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDL 598
            E+++  P   +     +           + +   I    Q   + IL     +   + L
Sbjct: 355 QEEVVELPEKAISSFQMLFPTVAEQDRPWQHLIQAIKKWKQDKYQLILSFSSERSRNKFL 414

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK----FDVLV 637
              L E++    ++           II   R+G     F++L+
Sbjct: 415 N--LAEQDGVTPFLEYHPTQQGCFAIISPFRVGVDLSWFNILI 455



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 65/185 (35%), Gaps = 7/185 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L+     I E  +I        PV     +   E + + +     +  
Sbjct: 759 VLTLTATPIPRTLQLSMSGICELSVIETAPPERKPVATAIIKKNKEKLKEILERELAREG 818

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  E +  ++ E     R    H ++   +  E I      + D+LV   +
Sbjct: 819 QVFWVYNRVQGLEQIVNFVKELVPEARVGVAHGQMPEKQLEENIHAFWHAELDILVCTAI 878

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD P    + +  A   G  +    L Q  GR  R+      ++  +  +S+    
Sbjct: 879 IESGLDFPRANTLIVDQAHMFGLGQ----LYQLRGRVGRSDRQAYAVFVISDLESLSEQA 934

Query: 702 DETTR 706
            E  R
Sbjct: 935 RERLR 939


>gi|58699570|ref|ZP_00374278.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58533914|gb|EAL58205.1| excinuclease ABC, B subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 130

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/126 (44%), Positives = 71/126 (56%), Gaps = 21/126 (16%)

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           +TSLIQTIGRAARN   +VILYAD IT S+  A+ ET RRR+KQ EHN  HN        
Sbjct: 23  ETSLIQTIGRAARNAEGRVILYADKITGSLDRALRETERRRKKQEEHNILHN-------- 74

Query: 728 KIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                    ++       IS   Q+ ++++ K   +   LRKQM   A+NL FEEAAR  
Sbjct: 75  ---------IIPKTIIKPISNTLQERAIAEPKVNTNKDDLRKQMIEHAENLEFEEAAR-- 123

Query: 788 DEIKRL 793
             IK+L
Sbjct: 124 --IKKL 127


>gi|291286200|ref|YP_003503016.1| transcription-repair coupling factor [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883360|gb|ADD67060.1| transcription-repair coupling factor [Denitrovibrio acetiphilus DSM
           12809]
          Length = 1103

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 103/296 (34%), Gaps = 37/296 (12%)

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSIN 252
            R +I++A NK     +  E + FF    V  F  Y      EA V              
Sbjct: 23  GRVSILVAGNKREYDLIMQEAEFFFSGVRVLGFPEYTQDPYEEARVL------------- 69

Query: 253 EQIDRMRHSATRSLLERN--DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLS 310
            ++   R S    LL  +    +V +    +  +   + ++     +K+G + E++EL  
Sbjct: 70  PEVFAKRASTLDFLLNADASCILVTTPYGLLKSLPPKDVFASATADIKVGGTYEREELEY 129

Query: 311 SLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQK 370
            L    Y   ++    G +   GD++E+FP+  E     +  F ++ E IS     T + 
Sbjct: 130 ILAYSGYVHVEMVEGAGEYAFRGDTLEVFPADSETPCL-IEFFDDEAERISYVDIRTRRT 188

Query: 371 IRNVETIKIYANSHYVTPRPTLNTAMK--YIKEELKMRLIELEKEGRLLEAQRLEQRITY 428
           ++  +T+++   S  +     L   +    I +++++                +E  + Y
Sbjct: 189 LKIEKTVRLLPASEALFDVDDLRKYINDSDILDKVELYGKYAGCHWLTPAVHNMENLMDY 248

Query: 429 DLEMLETTGSCQSIENYSRYLTGR--------NPGE--------PPPTLFEYIPED 468
             E           E+Y    T            GE         P  +  Y+ ED
Sbjct: 249 VSESYNFLFFT---EDYRSIFTDFRVLIDDKMPEGENFWNNNFIAPSRMLFYMTED 301



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 12/149 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + +SATP    L+     I +     T  VD    I     +  +V + I    ++G +
Sbjct: 715 VLYLSATPIPRTLQLSLSGIRDISTIDTPPVDRLPVITKVIKRDVEVKNAIQRELERGGQ 774

Query: 585 ILLTVLTKRMAEDLT-------EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +          E++          L   N+ +   H ++ + E  +I+ +   GK DVLV
Sbjct: 775 VFFL---HNRVENIQTVAAGVKNMLPGANVSIA--HGQMTSSELEKILMEFYSGKTDVLV 829

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLR 666
              ++  G+DI     + I DA   G  +
Sbjct: 830 CTAIIENGIDIANANTIVINDAAHLGLAQ 858


>gi|311771467|dbj|BAJ25759.1| vasa [Pagrus major]
          Length = 631

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 11/139 (7%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V   S R Q+ D+            R ++ V TKR A+ +  YL +  +    +H + +
Sbjct: 429 QVTKFSKREQLLDLLKTTGT-----ERTMVFVETKRQADFIATYLCQEKVPTTSIHGDRE 483

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER   + D R GK  V+V  ++   GLDIP+   V   D  K+         +  IGR
Sbjct: 484 QRERELALADFRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPKD-----IDEYVHRIGR 538

Query: 678 AARNVNSK-VILYADTITK 695
             R  N+   + + D    
Sbjct: 539 TGRCGNTGRAVSFYDPEAD 557


>gi|307611190|emb|CBX00835.1| hypothetical protein LPW_25391 [Legionella pneumophila 130b]
          Length = 589

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 97/289 (33%), Gaps = 42/289 (14%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           +    + SAT   + + Q     +       IR        +E R     V    D +  
Sbjct: 180 KKQMALFSAT-MPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIR 238

Query: 578 AAQ-QGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             + +  + +++ V TK   E++ E L +  +R   +H ++    R  II   + G  D+
Sbjct: 239 VLEVEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDI 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLD+     V   D   +       + +  IGR  R   S V IL+     
Sbjct: 299 LVATDVAARGLDVERVTHVINYDMPHDN-----ETYVHRIGRTGRAGRSGVTILFVTPKE 353

Query: 695 KSIQLAIDETTRRR----------EKQLEHNKK--HNINPQ-------SVKEKIMEVIDP 735
             +  +I+  TR+R            Q+   ++   NI  +       S K  + E I  
Sbjct: 354 SRLISSIERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEEYIKD 413

Query: 736 ILLEDAATTNISIDAQQLSLS-KKKGKAHLKSLRKQMHLAADNLNFEEA 783
             +                +  +K+           M  AA     E A
Sbjct: 414 HDVSAVDVAAALALLLHKDMPWRKELN---------MPKAASAFKEERA 453


>gi|26344810|dbj|BAC36054.1| unnamed protein product [Mus musculus]
          Length = 411

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 211 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 270

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 271 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 325

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 326 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 380

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 381 VKNDDIRILRDIEQ 394


>gi|301165394|emb|CBW24965.1| transcription-repair coupling factor [Bacteriovorax marinus SJ]
          Length = 1165

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 104/315 (33%), Gaps = 41/315 (13%)

Query: 165 HSREKVQLLLGVTGSGKTFTMAKVIEAMQ----RPAIVMAPNKILAAQLYSEFKNFFPHN 220
           +S+++   + G+  +  +F + +  +  +       + +  +   A  LY  FK      
Sbjct: 15  NSKKENLHITGLDSAQFSFIINECEKDTEFIKKNNFVFICDSVDHAENLYECFK------ 68

Query: 221 AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLL---ERNDCIVVSS 277
            V        +Y      P  D      +  +E+    R      L    E    ++ + 
Sbjct: 69  -VSKISKKLLFY------PGHDLSPYSGAMTSERALFERFKVLNFLANNNEETFILISTF 121

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            S    +     + +   +++  D +   EL   LV   Y         GTF   G+  +
Sbjct: 122 ESFSMRVPPRSFFKEYNFKIETSDIISPDELARKLVSLGYSSSPSIEEPGTFSSKGEIFD 181

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR--NVETIKIYANSHYVTPRPTLNTA 395
           I+   ++    R+  F + IEEI      T + IR   ++ + I             +  
Sbjct: 182 IY--TIDSRPIRLLYFDDMIEEIIFIDLETQKSIRDKKLDKVSIAPTPQIFGTDEVFSH- 238

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
                 +L+  +       +   A+R         E+  +       +NY+ +       
Sbjct: 239 ------KLRENIPMPATAQKSRFAKR--------KEIFSSLSDNYLFDNYAAFTPLFF-- 282

Query: 456 EPPPTLFEYIPEDSL 470
           E    L +Y+ ++++
Sbjct: 283 EKSEVLLDYLNDETI 297



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 92/249 (36%), Gaps = 19/249 (7%)

Query: 528  VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--QGLRI 585
            ++ATP    L+     I E  +  T        I+S   + +D+  +  +  +  +G ++
Sbjct: 774  LTATPIPRTLQLSFLGIREMSLIQTAPPRRQ-SIKSYLIKEDDLTLQTAIKKELNRGGQV 832

Query: 586  LLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
             +        +  + Y+ E     +  Y H ++   E  E +     G + +L+   ++ 
Sbjct: 833  FIVHNKVSDIDHFSNYIQELVPEAKIVYAHGQMSEKELEEKMSAFYNGTYQILISTTIIE 892

Query: 644  EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
             G+DIP    + I  AD  G  +    L Q  GR  R+       +     K     I E
Sbjct: 893  SGIDIPNANTMIIDRADNYGLAQ----LHQLRGRIGRSDKKAYAYFVIPKHKP----ISE 944

Query: 704  TTRRREK--QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761
              +RR K  Q   +     N  +   +I    D +  E +      ID   L L  +  K
Sbjct: 945  IAQRRLKALQTYADMGSGFNIATCDLEIRGAGDILGAEQSGQ----IDNVGLELYMQLLK 1000

Query: 762  AHLKSLRKQ 770
              ++ LR +
Sbjct: 1001 EAIQELRGE 1009



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 130 SINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSR-EKVQLLLGVTGSGKT-FTMAK 187
           S +   ++   F+M   +  + DQ  A+ ++++ +        L+ G  G GKT   M  
Sbjct: 602 SFSAPDQEYRDFEMAFPFQETPDQINAVNEVIESMQKPIAMDHLVCGDVGFGKTEVAMRA 661

Query: 188 VIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
             +A+  ++   V+ P  +LA Q Y+ F   F    VE
Sbjct: 662 AFKAVLDKKQVCVLVPTTVLALQHYNSFVKRFSKFPVE 699


>gi|195030246|ref|XP_001987979.1| GH10918 [Drosophila grimshawi]
 gi|193903979|gb|EDW02846.1| GH10918 [Drosophila grimshawi]
          Length = 1791

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 84/251 (33%), Gaps = 26/251 (10%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++        VD + +T      +   +  R     + GF        R +   
Sbjct: 312 TPGRLLDF--------VDRTFITFEATRFVVLDEADRM---LDMGF----ADSMRKIMQH 356

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT-----GLVDPPVEIRSARTQVEDV 571
           +       T++ SAT    E+++  G  +   I        G      +      + +  
Sbjct: 357 QTMRPEHQTLMFSAT-FPEEIQRMAGEFLNNYIFVAIGVVGGACSDVQQTFHELKKFDKR 415

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
              +++  +     ++ V TKR A+ L   L E       +H +    +R + +RD + G
Sbjct: 416 SKLMDILQEGADGTIVFVETKRGADFLASILSETKFPTTSIHGDRLQSQREQALRDFKTG 475

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
              VL+  ++   GLDI     V   D  K     +    +  IGR  R  N        
Sbjct: 476 HMKVLIATSVAARGLDIKNVKHVINYDMPK-----TVDDYVHRIGRTGRVGNRGRATSFF 530

Query: 692 TITKSIQLAID 702
              +   +A D
Sbjct: 531 DPNQDRGIAAD 541


>gi|17507121|ref|NP_491703.1| hypothetical protein F33D11.10 [Caenorhabditis elegans]
 gi|2773184|gb|AAB96704.1| Hypothetical protein F33D11.10 [Caenorhabditis elegans]
          Length = 399

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 78/189 (41%), Gaps = 16/189 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +++SAT     LE     + + I        +   G+    V +     + + + D  
Sbjct: 201 QVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLY 260

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +       + +L   T+R  + LT+ + E N  V  MH +++  +R E++++ R G   V
Sbjct: 261 DTLTIT--QAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRV 318

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           L+  ++   GLD+P+  LV   D        ++   I  IGR+ R     V I +     
Sbjct: 319 LISTDVWARGLDVPQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVKQDD 373

Query: 695 KSIQLAIDE 703
             I   I++
Sbjct: 374 VRILRDIEQ 382


>gi|70732712|ref|YP_262475.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5]
 gi|68347011|gb|AAY94617.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           fluorescens Pf-5]
          Length = 444

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 98/280 (35%), Gaps = 38/280 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L +   ++++           Q+  +   +  R     + GF   L S     P  
Sbjct: 131 TPGRLLDLFRQNAV--------KFSQLQTLVLDEADRM---LDLGFSEELKSIYAALP-- 177

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVE 569
                  +  T++ SAT      +    ++ + +   + P  +    V+  +     + +
Sbjct: 178 ------KKRQTLLFSATFSDAIRQLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRK 231

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                  L   +  ++L+   T+   + L E L  + +    +H +     R   +   +
Sbjct: 232 PELFSHLLRKNRWKQVLVFAKTRNGVDALVEKLQGQGVNADGIHGDKPQATRQRALDRFK 291

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
             +  +LV  ++   GLDI +  LV   D             I  IGR  R  ++   I 
Sbjct: 292 ASEIQILVATDVAARGLDIEDLPLVVNFDLPIV-----AEDYIHRIGRTGRAGSTGEAIS 346

Query: 689 YADTITKSIQLAID----ETTRRREKQLEHNKKHNINPQS 724
                  ++  AI+    +T +R E+Q +   +H   P++
Sbjct: 347 LVCADEVNLLSAIEMLTRQTLKRHEEQ-DFEPEHR-VPET 384


>gi|209545470|ref|YP_002277699.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533147|gb|ACI53084.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 390

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 90/250 (36%), Gaps = 31/250 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++  D+ + +D  H T   +    R        + + GF      D R +   
Sbjct: 148 TPGRLLDHL-ADATITLD--HTTCLVLDEADR--------MLDLGFV----EDVRAIAAR 192

Query: 517 EWNCLRPTTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
               +R  T++ SAT        G   L +   I   +   P   +   V    A  +  
Sbjct: 193 L--PVRHQTLLFSATMSPAISALGRQLLHKPLQIAPPEQAAPPPRIRQQVIFTPAARKAA 250

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   +    + G R ++   TK+ A+ L   L    +    +H +   + R   + D R
Sbjct: 251 SLLAVL--RREAGGRTMVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFR 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+  VLV  +++  G+D+ +  LV   D           + I  IGR AR       L 
Sbjct: 309 RGRLLVLVATDVMARGIDVEDVALVVNFD-----IPEQPETYIHRIGRTARAGRRGTALS 363

Query: 690 ADTITKSIQL 699
                + ++L
Sbjct: 364 LCDPAERLKL 373


>gi|32880087|gb|AAP88874.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17, 72kDa [synthetic
           construct]
 gi|61372130|gb|AAX43789.1| DEAD box polypeptide 17 [synthetic construct]
 gi|61372139|gb|AAX43790.1| DEAD box polypeptide 17 [synthetic construct]
          Length = 651

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 396 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 449

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 450 QA------RELIKVLEEANQAINPK 468


>gi|62857341|ref|NP_001016823.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Xenopus (Silurana)
           tropicalis]
 gi|89273979|emb|CAJ82187.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Xenopus (Silurana)
           tropicalis]
 gi|163916608|gb|AAI57773.1| hypothetical protein LOC549577 [Xenopus (Silurana) tropicalis]
          Length = 647

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 11/183 (6%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVD---PPVEIRSARTQVEDVYDEINLAA 579
            T++ SAT P   +    + +  + +    GLV      VE      Q     D++    
Sbjct: 409 QTLMFSATYPAEIQRLASKFLKSDHLFVVVGLVGGACSDVEQTILEIQEYRKRDKLVEIL 468

Query: 580 QQ--GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           Q     R ++ V TK+ A+ +  YL + +     +H + +  +R E IRD R GK  V+V
Sbjct: 469 QSSGNERTMIFVNTKKKADVIAGYLCQEHFPTTSIHGDREQCQREEAIRDFRSGKCPVIV 528

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              +   GLDI     V   D  KE         +  IGR  R  N         + +  
Sbjct: 529 CTAVAARGLDIENVQHVINYDVPKE-----IDEYVHRIGRTGRCGNVGKATSFFNVNEDH 583

Query: 698 QLA 700
            +A
Sbjct: 584 VVA 586


>gi|296191894|ref|XP_002743821.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
           [Callithrix jacchus]
          Length = 650

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 396 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 449

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 450 QA------RELIKVLEEANQAINPK 468


>gi|156405006|ref|XP_001640523.1| predicted protein [Nematostella vectensis]
 gi|156227658|gb|EDO48460.1| predicted protein [Nematostella vectensis]
          Length = 407

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 207 ATQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 266

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I++D R 
Sbjct: 267 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVASMHGDMPQKEREAIMKDFRA 321

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 322 GQSRVLISTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINF 376

Query: 690 ADTITKSIQLAIDE 703
             +    I   I++
Sbjct: 377 VKSDDIRILRDIEQ 390


>gi|158530232|gb|ABW71831.1| putative RNA helicase [Phytophthora infestans]
          Length = 544

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 16/186 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E+       +   I+ T           +   VE+     +   + D 
Sbjct: 321 QTLMWSAT-WPKEIVALANDFLTDFIQVTVGSLDLTANKRIKQIVEVMDDHQKYSSLQDH 379

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +    + G RI++   TKR A++L+  L       + +H      ER  ++R+ + G+  
Sbjct: 380 LRDIYEGG-RIIIFCETKRGADELSRNLRNTRYICKAIHGNKSQEERDYVLREFKDGRTQ 438

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   GLDI +   V   D  K     +    I  IGR AR  N    +   T +
Sbjct: 439 ILVATDVASRGLDIKDIRYVVNFDMPK-----NIEDYIHRIGRTARAGNKGTSISFFTAS 493

Query: 695 KSIQLA 700
            + +LA
Sbjct: 494 NNGRLA 499


>gi|156406955|ref|XP_001641310.1| predicted protein [Nematostella vectensis]
 gi|156228448|gb|EDO49247.1| predicted protein [Nematostella vectensis]
          Length = 487

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 27/240 (11%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 214 RMIDMGFE----EDVRTI-FSYFKSQR-QTLLFSATMPKKIQNFAKSALVKPVTVNVGRA 267

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + Q   V   +    +    +L+    K   +D+ EYL  + +   
Sbjct: 268 GAASLDVIQEVEYVK-QEAKVVYLLECLQKTPPPVLIFAEKKSDVDDIHEYLLLKGVEAV 326

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H +    ER+  IR+   G  DVLV  ++  +GLD P+   V   D           +
Sbjct: 327 AIHGDKSQEERVHAIREFHQGNKDVLVATDVASKGLDFPDIQHVINFD-----MPEDIEN 381

Query: 671 LIQTIGRAARNVNSKVILYADTITKS----------IQLAIDETTRRREKQLEHNKKHNI 720
            +  IGR  R   + V       +            +  A  + TR R  Q+++ +   I
Sbjct: 382 YVHRIGRTGRCGKTGVATTFINKSCEESVLLDLKHLLMEAKQKITRARSLQVDNEEYLGI 441


>gi|114794619|pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794620|pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794621|pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794622|pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
          Length = 391

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 189 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 248

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 249 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 303

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 304 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 358

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 359 VKNDDIRILRDIEQ 372


>gi|318056099|gb|ADV36250.1| Vasa [Gadus morhua]
          Length = 644

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 10/143 (6%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V   S R Q+ D+            R ++ V TKR A+ +  +L   N+    +H + +
Sbjct: 441 QVTKFSKRDQLLDILKNTGT-----ERTMVFVETKRQADFIAAFLCRENVATTSIHGDRE 495

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + + D R GK  VLV  ++   GLDI +   V   D        +    +  IGR
Sbjct: 496 QREREQALGDFRSGKCPVLVATSVAARGLDIKDVQHVVNFD-----LPNNIDDYVHRIGR 550

Query: 678 AARNVNSKVILYADTITKSIQLA 700
             R  N+   +      +  QLA
Sbjct: 551 TGRCGNTGQAVSFYDPEQDNQLA 573


>gi|57899404|dbj|BAD88051.1| putative ATP-dependent RNA helicase DB10 [Oryza sativa Japonica
           Group]
 gi|215694706|dbj|BAG89897.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 583

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 14/187 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           R  T++ +AT         + ++V  +    G VD  V   +    VE +         +
Sbjct: 118 RRQTLMYTATWPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLE 177

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  +   G ++L+   TKRM + L   L  R      +H +    ER +++   R G+ 
Sbjct: 178 QILRSQDSGSKVLIFCTTKRMCDQLARTLT-RQFGASAIHGDKSQSEREKVLSHFRSGRS 236

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDI +  +V   D     F       +  IGR  R   + V       
Sbjct: 237 PILVATDVAARGLDIKDIRVVINYD-----FPTGIEDYVHRIGRTGRAGATGVAYTFFCD 291

Query: 694 TKSIQLA 700
             S   A
Sbjct: 292 QDSKYAA 298


>gi|47678395|emb|CAG30318.1| DDX17 [Homo sapiens]
 gi|109451124|emb|CAK54423.1| DDX17 [synthetic construct]
 gi|109451702|emb|CAK54722.1| DDX17 [synthetic construct]
 gi|119580647|gb|EAW60243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_c [Homo
           sapiens]
 gi|169145045|emb|CAQ08924.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
 gi|208967743|dbj|BAG72517.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [synthetic construct]
          Length = 652

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 396 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 449

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 450 QA------RELIKVLEEANQAINPK 468


>gi|52842555|ref|YP_096354.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629666|gb|AAU28407.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 589

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 97/289 (33%), Gaps = 42/289 (14%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           +    + SAT   + + Q     +       IR        +E R     V    D +  
Sbjct: 180 KKQMALFSAT-MPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIR 238

Query: 578 AAQ-QGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             + +  + +++ V TK   E++ E L +  +R   +H ++    R  II   + G  D+
Sbjct: 239 VLEVEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDI 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLD+     V   D   +       + +  IGR  R   S V IL+     
Sbjct: 299 LVATDVAARGLDVERVTHVINYDMPHDN-----ETYVHRIGRTGRAGRSGVTILFVTPKE 353

Query: 695 KSIQLAIDETTRRR----------EKQLEHNKK--HNINPQ-------SVKEKIMEVIDP 735
             +  +I+  TR+R            Q+   ++   NI  +       S K  + E I  
Sbjct: 354 SRLISSIERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEEYIKE 413

Query: 736 ILLEDAATTNISIDAQQLSLS-KKKGKAHLKSLRKQMHLAADNLNFEEA 783
             +                +  +K+           M  AA     E A
Sbjct: 414 HDVSAVDVAAALALLLHKDMPWRKELN---------MPKAASAFKEERA 453


>gi|62638007|gb|AAX92639.1| Vasa protein [Monopterus albus]
          Length = 450

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 6/114 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R GK  VLV  ++ 
Sbjct: 277 ERTMVFVETKRQADFIALFLCQEKVPTTSIHGDREQPEREKALADFRSGKCPVLVATSVA 336

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITK 695
             GLDIP+   V   D        +    +  IGR  R  N  + + + D    
Sbjct: 337 ARGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNIGRAVSFFDPNAD 385


>gi|268563240|ref|XP_002638790.1| Hypothetical protein CBG05145 [Caenorhabditis briggsae]
 gi|187035232|emb|CAP25672.1| hypothetical protein CBG_05145 [Caenorhabditis briggsae AF16]
          Length = 400

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 78/189 (41%), Gaps = 16/189 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +++SAT     LE     + + I        +   G+    V +     + + + D  
Sbjct: 202 QVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDKEEWKFDTLIDLY 261

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +       + +L   T+R  + LT+ + E N  V  MH +++  +R E++++ R G   V
Sbjct: 262 DTLTIT--QAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGNTRV 319

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           L+  ++   GLD+P+  LV   D        ++   I  IGR+ R     V I +     
Sbjct: 320 LISTDVWARGLDVPQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVKQDD 374

Query: 695 KSIQLAIDE 703
             I   I++
Sbjct: 375 VRILRDIEQ 383


>gi|297261056|ref|XP_001092491.2| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Macaca
           mulatta]
 gi|297708870|ref|XP_002831174.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Pongo
           abelii]
 gi|332859781|ref|XP_525595.3| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Pan
           troglodytes]
 gi|3122595|sp|Q92841|DDX17_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX17; AltName:
           Full=DEAD box protein 17; AltName: Full=DEAD box protein
           p72; AltName: Full=RNA-dependent helicase p72
 gi|1592565|gb|AAC50787.1| DEAD-box protein p72 [Homo sapiens]
 gi|2832596|emb|CAB09792.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
 gi|119580650|gb|EAW60246.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_f [Homo
           sapiens]
          Length = 650

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 396 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 449

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 450 QA------RELIKVLEEANQAINPK 468


>gi|297807481|ref|XP_002871624.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317461|gb|EFH47883.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 713

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 14/183 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           +  T++ +AT      +    ++V       G VD  V  +S    +E +         +
Sbjct: 406 KRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLE 465

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  + + G +I++   TKRM + L   L  R      +H +    ER +++   R G+ 
Sbjct: 466 QILRSQEPGSKIIIFCSTKRMCDQLARNLT-RTFGAAAIHGDKSQAERDDVLNQFRSGRT 524

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VLV  ++   GLD+ +  +V   D     F       +  IGR  R   + +       
Sbjct: 525 PVLVATDVAARGLDVKDIRVVVNYD-----FPNGVEDYVHRIGRTGRAGATGLAYTFFGD 579

Query: 694 TKS 696
             +
Sbjct: 580 QDA 582


>gi|121945880|dbj|BAF44659.1| RNA helicase [Neobenedenia girellae]
          Length = 670

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 16/189 (8%)

Query: 524 TTIVVSAT--PGSWELEQC--QGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT  P    L +   +  I   + R       +    V +     +   + D I
Sbjct: 382 QTLMFSATFPPQIQNLAKDFLKSYIFLSVGRVGSTSENITQSLVWVEEVD-KRNALLDFI 440

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   +  L  L+ V TKR A+ L E+LY R   V  +H +    ER   +++ R GK  +
Sbjct: 441 DFTKEDNL-TLVFVETKRGADSLEEFLYNREFSVSSIHGDRTQDERERALKNFRSGKTPI 499

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTIT 694
           +V   +   GLDIP    V   D             +  IGR  R  N  K   + +   
Sbjct: 500 MVATAVAARGLDIPNVKHVINYD-----LPNDIDEYVHRIGRTGRVGNLGKATSFFNDKN 554

Query: 695 KSIQLAIDE 703
           K++   + E
Sbjct: 555 KNLARDLVE 563


>gi|114153757|sp|Q9LYJ9|RH46_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 46
 gi|332004672|gb|AED92055.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana]
          Length = 645

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 14/183 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           +  T++ +AT      +    ++V       G VD  V  +S    +E +         +
Sbjct: 338 KRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLE 397

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  + + G +I++   TKRM + L   L  R      +H +    ER +++   R G+ 
Sbjct: 398 QILRSQEPGSKIIIFCSTKRMCDQLARNLT-RTFGAAAIHGDKSQAERDDVLNQFRSGRT 456

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VLV  ++   GLD+ +  +V   D     F       +  IGR  R   + +       
Sbjct: 457 PVLVATDVAARGLDVKDIRVVVNYD-----FPNGVEDYVHRIGRTGRAGATGLAYTFFGD 511

Query: 694 TKS 696
             +
Sbjct: 512 QDA 514


>gi|7573310|emb|CAB87628.1| DRH1 DEAD box protein-like [Arabidopsis thaliana]
          Length = 713

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 14/183 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           +  T++ +AT      +    ++V       G VD  V  +S    +E +         +
Sbjct: 406 KRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLE 465

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  + + G +I++   TKRM + L   L  R      +H +    ER +++   R G+ 
Sbjct: 466 QILRSQEPGSKIIIFCSTKRMCDQLARNLT-RTFGAAAIHGDKSQAERDDVLNQFRSGRT 524

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VLV  ++   GLD+ +  +V   D     F       +  IGR  R   + +       
Sbjct: 525 PVLVATDVAARGLDVKDIRVVVNYD-----FPNGVEDYVHRIGRTGRAGATGLAYTFFGD 579

Query: 694 TKS 696
             +
Sbjct: 580 QDA 582


>gi|79513425|ref|NP_196965.2| ATP binding / ATP-dependent helicase/ helicase/ nucleic acid
           binding / protein binding [Arabidopsis thaliana]
 gi|332004671|gb|AED92054.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana]
          Length = 712

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 14/183 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           +  T++ +AT      +    ++V       G VD  V  +S    +E +         +
Sbjct: 406 KRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLE 465

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  + + G +I++   TKRM + L   L  R      +H +    ER +++   R G+ 
Sbjct: 466 QILRSQEPGSKIIIFCSTKRMCDQLARNLT-RTFGAAAIHGDKSQAERDDVLNQFRSGRT 524

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VLV  ++   GLD+ +  +V   D     F       +  IGR  R   + +       
Sbjct: 525 PVLVATDVAARGLDVKDIRVVVNYD-----FPNGVEDYVHRIGRTGRAGATGLAYTFFGD 579

Query: 694 TKS 696
             +
Sbjct: 580 QDA 582


>gi|323355798|gb|EGA87612.1| Fal1p [Saccharomyces cerevisiae VL3]
          Length = 372

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 33/223 (14%)

Query: 515 FEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSA 564
           ++ +  L      +VVSAT     LE  +  + + +        I   G+    V +   
Sbjct: 163 YDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKE 222

Query: 565 RTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
             + +   D+YD + +      + ++   TK+  + L++ L + N  V  MH ++K  ER
Sbjct: 223 EWKFDTLCDIYDSLTIT-----QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEER 277

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            +++ D R G   VL+  ++   G+D+ +  LV   D           + I  IGR+ R 
Sbjct: 278 DKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYD-----LPEIIENYIHRIGRSGRF 332

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
               V +   T     +L        RE +  ++ K  INP  
Sbjct: 333 GRKGVAINFITKADLAKL--------REIEKFYSIK--INPMP 365


>gi|323338339|gb|EGA79567.1| Fal1p [Saccharomyces cerevisiae Vin13]
          Length = 282

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 33/223 (14%)

Query: 515 FEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSA 564
           ++ +  L      +VVSAT     LE  +  + + +        I   G+    V +   
Sbjct: 73  YDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKE 132

Query: 565 RTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
             + +   D+YD + +      + ++   TK+  + L++ L + N  V  MH ++K  ER
Sbjct: 133 EWKFDTLCDIYDSLTIT-----QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEER 187

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            +++ D R G   VL+  ++   G+D+ +  LV   D           + I  IGR+ R 
Sbjct: 188 DKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYD-----LPEIIENYIHRIGRSGRF 242

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
               V +   T     +L        RE +  ++ K  INP  
Sbjct: 243 GRKGVAINFITKADLAKL--------REIEKFYSIK--INPMP 275


>gi|269959135|ref|YP_003328924.1| transcription repair coupling factor [Anaplasma centrale str.
           Israel]
 gi|269848966|gb|ACZ49610.1| transcription repair coupling factor [Anaplasma centrale str.
           Israel]
          Length = 1122

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 105/326 (32%), Gaps = 44/326 (13%)

Query: 172 LLLGVTGSGKTFTMAKV-IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           ++ GV        MA++ +E      + +       A L    K F     V        
Sbjct: 6   VITGVAPEFGDMLMAQMCMEDRHTSFVFVVQEGTSLAHLAKTLKFFDRERDVFI------ 59

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV--SSVSCIYGIGSVE 288
                  +P+ D+   K  S +  +   R      +       V+  +S +    +    
Sbjct: 60  -------LPKWDSIPHKGVSPSSLVMATRMKCLLDISNAKAPYVMLTTSGAVAQKVLPAH 112

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAW 348
           S +   + +  GD +    L+  LV   Y +       G+F V G+ ++IF   +++   
Sbjct: 113 SVASATITVAPGDGLSMDALVQHLVACGYTQSSAVREVGSFAVRGEIVDIFQP-IDNKPT 171

Query: 349 RVSMFGNDIEEISEFYPLTGQK-IRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
           R+    + +E I  F   T       + ++ IY  S  +     LN              
Sbjct: 172 RIDFCYDAVESIRCFDLDTQITDGGALPSLVIYPASEVIKTEENLNRFYTRY-------- 223

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
                       Q+         E + +   C   E +   L      +   T+F+Y P 
Sbjct: 224 -----------MQQYPNPDPAFAEAMLSRQKCMGEEQWLPLL----QADELSTIFDYAP- 267

Query: 468 DSLLFVDE--SHVTIPQISGMYRGDF 491
           ++ L + E  S   + ++ G    D+
Sbjct: 268 NAKLVLAEQASEEVLRRLEGAQEEDY 293



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 17/186 (9%)

Query: 516 EEWNCLRP--TTIVVSATPGSWELEQC-QGIIVEQIIR--PTGLVDPPVEIRSARTQVED 570
           E+   LR     + +SATP    L     GI    ++R  P G +   + I      +  
Sbjct: 722 EQLKKLRNDVHVLSLSATPIPRTLHMSLSGIKNLSVLRTPPMGRMAVDIAIIQYDGNI-- 779

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +   I     +G R+  T       +    DL + +    + V   H    T    +I+ 
Sbjct: 780 IKTAILDEVSRGGRVFFTCPFISDIDGVLADLQKLVPNVKVEVA--HGRTSTRALDKIMN 837

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D   GKF VL+  +++  G+DIP    + + +AD  G  +    L Q  GR  R+     
Sbjct: 838 DFFDGKFSVLLTTSIIESGIDIPFANTIIVHNADMFGLAQ----LYQLKGRVGRSTLKGY 893

Query: 687 ILYADT 692
             +  +
Sbjct: 894 AYFIVS 899


>gi|187957004|gb|AAI58084.1| EG434080 protein [Mus musculus]
          Length = 411

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     +   I        +   G+    V +     + +   D
Sbjct: 211 ATQVVLISATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 270

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++  +TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 271 LYDTLTIT-----QAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 325

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 326 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 380

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 381 VKNDDIRILRDIEQ 394


>gi|320102612|ref|YP_004178203.1| transcription-repair coupling factor [Isosphaera pallida ATCC
           43644]
 gi|319749894|gb|ADV61654.1| transcription-repair coupling factor [Isosphaera pallida ATCC
           43644]
          Length = 1111

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 84/236 (35%), Gaps = 6/236 (2%)

Query: 146 DYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKIL 205
           D  P+  +    A ++  +        + G  GS     +A +        +V+  +   
Sbjct: 23  DLVPTIARAQGFAGVIAALRQGRGA-TIEGAWGSSAALAIAALACEAPGMVLVVIAHVGD 81

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
             +   + K F      E F ++     P       D        I  +   +  +   +
Sbjct: 82  IDEFVEDLKTFVGERP-EVFPAWLK--PPVVTSDLNDPAAGVADEIAARRLHLVQTWRGA 138

Query: 266 LLERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
                  +VV+ +  +   +   ++    +  L +G +++ ++L++ +      R ++  
Sbjct: 139 GSSAPPKLVVTPIQALVQPVPRADALQTAVKTLSVGQTLKPEDLMAWMSSLGMTRVEVVE 198

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           + G F   G  I++FP    +   R+  FG+ +E I  F P T + +      ++ 
Sbjct: 199 VAGEFSSRGGLIDLFPPDAAE-PIRLEFFGDQLESIRPFDPATQRSLGKWTEARVV 253



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 68/197 (34%), Gaps = 14/197 (7%)

Query: 525 TIVVSATPGSWELEQCQ---GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L         I      P G     +E R  R     +   I+    +
Sbjct: 720 VLTLSATPIPRTLHMSLLGIRDISNLETPPPGR--KAIETRICRFDEAIIRQAIHRELNR 777

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++          + + + L       R +  H ++   +  + +      + D+LV  
Sbjct: 778 NGQVYFVHNRVHDLDAIADRLRGIVPEARIVTAHGQMPGDQLEKAMLAFVRHQADILVAT 837

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDIP    + I +AD+ G       L Q  GR  R+ N     YA  +    + 
Sbjct: 838 TIIESGLDIPNANTIFINEADRHGL----ADLHQLRGRVGRSRNR---AYAYLLLHESRA 890

Query: 700 AIDETTRRREKQLEHNK 716
              E  RR +   E  +
Sbjct: 891 VTPEAARRLKAIEEFTE 907


>gi|171847136|gb|AAI61525.1| LOC549577 protein [Xenopus (Silurana) tropicalis]
          Length = 678

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 11/183 (6%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVD---PPVEIRSARTQVEDVYDEINLAA 579
            T++ SAT P   +    + +  + +    GLV      VE      Q     D++    
Sbjct: 440 QTLMFSATYPAEIQRLASKFLKSDHLFVVVGLVGGACSDVEQTILEIQEYRKRDKLVEIL 499

Query: 580 QQ--GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           Q     R ++ V TK+ A+ +  YL + +     +H + +  +R E IRD R GK  V+V
Sbjct: 500 QSSGNERTMIFVNTKKKADVIAGYLCQEHFPTTSIHGDREQCQREEAIRDFRSGKCPVIV 559

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              +   GLDI     V   D  KE         +  IGR  R  N         + +  
Sbjct: 560 CTAVAARGLDIENVQHVINYDVPKE-----IDEYVHRIGRTGRCGNVGKATSFFNVNEDH 614

Query: 698 QLA 700
            +A
Sbjct: 615 VVA 617


>gi|254756954|ref|ZP_05208982.1| DEAD/DEAH box helicase [Bacillus anthracis str. Australia 94]
          Length = 516

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  +++    ++      + + EK+   I+   L         +  +  
Sbjct: 351 QLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|228956670|ref|ZP_04118461.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228803008|gb|EEM49835.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 517

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  +++    ++      + + EK+   I+   L         +  +  
Sbjct: 351 QLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|229041132|ref|ZP_04189892.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
 gi|228727214|gb|EEL78411.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
          Length = 525

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  +++    ++      + + EK+   I+   L         +  +  
Sbjct: 351 QLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|193669397|ref|XP_001951491.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Acyrthosiphon
           pisum]
          Length = 401

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               I++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 201 ATQVILISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 260

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 261 LYDTLTIT-----QAVIFCSTKRKVDWLTEKMRESNFTVSSMHGDMPQKERDAIMKEFRA 315

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 316 GQTRVLITTDIWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINF 370

Query: 690 ADTITKSIQLAIDE 703
             +    I   I++
Sbjct: 371 VKSDDIRILRDIEQ 384


>gi|229107908|ref|ZP_04237540.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
 gi|229125742|ref|ZP_04254771.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-Cer4]
 gi|229143032|ref|ZP_04271470.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST24]
 gi|296501059|ref|YP_003662759.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|146291075|sp|Q81IT9|CSHA_BACCR RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|228640440|gb|EEK96832.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST24]
 gi|228657715|gb|EEL13524.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-Cer4]
 gi|228675551|gb|EEL30763.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
 gi|296322111|gb|ADH05039.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 533

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  +++    ++      + + EK+   I+   L         +  +  
Sbjct: 351 QLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|332231227|ref|XP_003264799.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Nomascus
           leucogenys]
          Length = 644

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 328 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 387

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 388 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 441

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 442 QA------RELIKVLEEANQAINPK 460


>gi|8444|emb|CAA37037.1| unnamed protein product [Drosophila melanogaster]
          Length = 575

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 13/164 (7%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++                 +++ +  +I   ++   +I++ V TKR  +
Sbjct: 348 LELSANHNIRQVVDVCDEFSKE-------EKLKTLLSDIYDTSESPGKIIIFVETKRRVD 400

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L  ++    +R   +H +    ER  ++R+ R GK ++LV  ++   GLD+     V  
Sbjct: 401 NLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVIN 460

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            D     + ++    I  IGR  R+ N+K   +A     + + A
Sbjct: 461 FD-----YPQNSEDYIHRIGRTGRS-NTKGTSFAFFTKNNAKQA 498


>gi|322788219|gb|EFZ14001.1| hypothetical protein SINV_14366 [Solenopsis invicta]
          Length = 423

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               ++VSAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 223 ATQVVLVSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 282

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 283 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRS 337

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 338 GQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVSINF 392

Query: 690 ADTITKSIQLAIDE 703
             T    I   I++
Sbjct: 393 VKTDDIRILRDIEQ 406


>gi|74142079|dbj|BAE41100.1| unnamed protein product [Mus musculus]
          Length = 411

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 211 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 270

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 271 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 325

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 326 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 380

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 381 VKNDDIRILRDIEQ 394


>gi|242808610|ref|XP_002485202.1| ATP dependent RNA helicase (Dbp1), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218715827|gb|EED15249.1| ATP dependent RNA helicase (Dbp1), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 680

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 13/172 (7%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   +      L+    + V ++   +  +   +E      +   + D ++
Sbjct: 387 QTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQRIEYVEDHDKRSVLLDILH 446

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                GL  L+ V TKRMA+ L ++L  +N     +H +    ER   +   R G+  +L
Sbjct: 447 THGTTGL-TLIFVETKRMADSLCDFLINQNFPATAIHGDRTQRERERALEMFRNGRCPIL 505

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V   +   GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 506 VATAVAARGLDIPNVTHVVNYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 552


>gi|93587673|ref|NP_001035277.1| probable ATP-dependent RNA helicase DDX17 isoform 4 [Mus musculus]
 gi|76364169|sp|Q501J6|DDX17_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX17; AltName:
           Full=DEAD box protein 17
 gi|63146347|gb|AAH96036.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Mus musculus]
          Length = 650

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 396 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 449

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 450 QA------RELIKVLEEANQAINPK 468


>gi|40068493|ref|NP_951062.1| probable ATP-dependent RNA helicase DDX17 isoform 1 [Mus musculus]
 gi|74181626|dbj|BAE30078.1| unnamed protein product [Mus musculus]
 gi|74220643|dbj|BAE31531.1| unnamed protein product [Mus musculus]
 gi|148672698|gb|EDL04645.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_a [Mus
           musculus]
          Length = 652

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 396 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 449

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 450 QA------RELIKVLEEANQAINPK 468


>gi|238498592|ref|XP_002380531.1| DEAD/DEAH box RNA helicase [Aspergillus flavus NRRL3357]
 gi|220693805|gb|EED50150.1| DEAD/DEAH box RNA helicase [Aspergillus flavus NRRL3357]
          Length = 1201

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 90/264 (34%), Gaps = 34/264 (12%)

Query: 523 PTTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEI 575
             T++ SAT P + E    +     VE ++    +V P +    E+RS   +   + + +
Sbjct: 751 KQTVLFSATFPRNMEALARKTLNKPVEIVVGGRSVVAPEITQIVEVRSEDKKFIRLLELL 810

Query: 576 NLAAQQGL----RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       R L+ V  +  A+ L   L  +      +H     ++R   I D + G
Sbjct: 811 GNLYSTDENEDARALIFVERQEGADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAG 870

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
            F VL+  ++   GLD+ +  LV   DA            +   GR  R  N+   +   
Sbjct: 871 IFPVLIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF- 924

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNI--NPQSVKEKIMEVIDPILLEDAATTNISID 749
                    + E   R    +    K +    P+ V++ +   ++ +       +     
Sbjct: 925 ---------LTEDQERYSVDIAKALKQSGQSVPEPVQKMVDSFLEKVKAGKEKASASGFG 975

Query: 750 AQQLSLSKKKGKAHLKSLRKQMHL 773
            + L    ++  A       +M  
Sbjct: 976 GKGLERLDQERDA------ARMRE 993


>gi|71995724|ref|NP_490761.2| hypothetical protein Y65B4A.6 [Caenorhabditis elegans]
 gi|31746585|gb|AAK29954.2| Hypothetical protein Y65B4A.6 [Caenorhabditis elegans]
          Length = 399

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 78/189 (41%), Gaps = 16/189 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +++SAT     LE     + + I        +   G+    V +     + + + D  
Sbjct: 201 QVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLY 260

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +       + +L   T+R  + LT+ + E N  V  MH +++  +R E++++ R G   V
Sbjct: 261 DTLTIT--QAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRV 318

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           L+  ++   GLD+P+  LV   D        ++   I  IGR+ R     V I +     
Sbjct: 319 LISTDVWARGLDVPQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVKQDD 373

Query: 695 KSIQLAIDE 703
             I   I++
Sbjct: 374 VRILRDIEQ 382


>gi|221480806|gb|EEE19233.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
          Length = 657

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 11/181 (6%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEI 575
            +  T++ SAT      E  +  +++ ++   G      +D   E+   + Q   +   +
Sbjct: 394 HQRQTLLFSATMPRKIQEFAKSALIDPLVVNVGRAGAANLDVVQEVEYVK-QENKLPYLL 452

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   +    +L+    K+  +D+ EYL  + +    +H  +   ER E +R  R G+ DV
Sbjct: 453 HCLQKTAPPVLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSEAVRAFREGRKDV 512

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LVG ++  +GLD P    V   D  KE       + +  IGR  R   + V        +
Sbjct: 513 LVGTDVASKGLDFPAIQHVINFDMPKE-----IENYVHRIGRTGRCGRTGVATTFVNKNQ 567

Query: 696 S 696
            
Sbjct: 568 E 568


>gi|149065924|gb|EDM15797.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_a [Rattus
           norvegicus]
          Length = 652

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 396 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 449

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 450 QA------RELIKVLEEANQAINPK 468


>gi|257815096|gb|ACV69940.1| vasa [Osphronemus goramy]
          Length = 653

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 11/139 (7%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V   S R Q+ D+            R ++ V TKR A+ +  +L +  +    +H + +
Sbjct: 451 QVTKFSKREQLLDLLKTTGT-----ERTMVFVETKRQADFIATFLCQEKVPTTSIHGDRE 505

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + + D R GK  VLV  ++   GLDIP+   V   D        +    +  IGR
Sbjct: 506 QREREQALADFRSGKCPVLVATSVAARGLDIPDVQHVVNFD-----LPSNIDEYVHRIGR 560

Query: 678 AARNVNSK-VILYADTITK 695
             R  N+   + + D    
Sbjct: 561 TGRCGNTGRAVSFYDPEAD 579


>gi|116668332|pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
           A Resolution
          Length = 374

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 174 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 233

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 234 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 288

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V +  
Sbjct: 289 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAVNF 343

Query: 691 DTITK 695
                
Sbjct: 344 VKNDD 348


>gi|73969115|ref|XP_860773.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 13 [Canis
           familiaris]
          Length = 624

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 310 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 369

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 370 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 423

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 424 QA------RELIKVLEEANQAINPK 442


>gi|327399449|ref|YP_004340318.1| transcription-repair coupling factor [Hippea maritima DSM 10411]
 gi|327182078|gb|AEA34259.1| transcription-repair coupling factor [Hippea maritima DSM 10411]
          Length = 1032

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 14/210 (6%)

Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEY---FVSYYDYYQPEAYVPRTD 242
           A  I   +   IV+  + I   +   +   F   N+          Y+     +  P   
Sbjct: 7   AYKIAKTEANTIVVLKDNIEIEKFALKINYFSKFNSTGSDICKFFCYEIPPHSSIEPSNY 66

Query: 243 TYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDS 302
               + SSI + I+           ++    + +  + I  + S +S+   ++Q+K GD 
Sbjct: 67  LVSNRLSSIYKLIN----------SDKRLVFLTNISALIQPVISFDSFIDKVIQIKRGDV 116

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
           VE  E +  L +  YKR D+    G F   G  I++F S   D   R+  F ++++ I  
Sbjct: 117 VELDEFIKRLSELFYKRVDMVYAPGEFAKRGAIIDLF-STFYDKPMRIEFFDDEVDSIKL 175

Query: 363 FYPLTGQKIRNVETIKIYANSHYVTPRPTL 392
           FY    +    ++   +   S Y       
Sbjct: 176 FYLENQRTFETIDEAVVLPASEYKAKEDEF 205



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 73/188 (38%), Gaps = 10/188 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L     GI+   +I+   L   P+E   A+ +   + D I     +  
Sbjct: 654 MLYLSATPIPRTLNMSLNGILDISVIKTPPLERKPIETIIAKRKSSIIRDAILRELSREG 713

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           R+     +    + +   L       +   +H+++   +   +      G+FD+L+  ++
Sbjct: 714 RVYFVHNSIETMDKVKSELDNLLPFAKKGIVHAKMPKNQIKSVFERFNNGEFDILISTSI 773

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL------YADTITK 695
           +  GLDI     + I DAD+ G L     L   +GR  R   + ++        A    +
Sbjct: 774 IESGLDIKSVDTIIIDDADRFG-LSDLHQLRGRVGRGDRVAYAYLLYRGKLSENATKRLE 832

Query: 696 SIQLAIDE 703
            +   I+ 
Sbjct: 833 YMSEFIER 840



 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           TVL  +  ++L +      + ++ +       ER  I++ L+ G+ D+L+  + +  + +
Sbjct: 562 TVLALQHFKNLKDRFKSFPVEIQLLTRFSTKSERERILKGLKQGRIDILITTHAVYSKDV 621

Query: 647 DIPECGLVAILDADKEG 663
           +  + GLV I +  + G
Sbjct: 622 EFADLGLVVIDEEHRFG 638


>gi|91206542|sp|Q4PHU9|DBP2_USTMA RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 552

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/401 (17%), Positives = 141/401 (35%), Gaps = 58/401 (14%)

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKY 398
           PS ++  AW +++ G D+  I+E    +G+ I   +  +        + P       +  
Sbjct: 153 PSAIQSQAWPMALSGRDLVAIAE--TGSGKTIGFALPAMVHINAQPLLKPGDGPIALILA 210

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR--YLTGRNPGE 456
              EL  ++    +  R   + RL  R      +         I +  R   +    PG 
Sbjct: 211 PTRELANQIQ--VECNRFGGSSRL--RTC---AVYGGVPKGPQIRDLQRGAEICIATPGR 263

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
               L +         VD     + +++ +   +  R     + GF         P   +
Sbjct: 264 ----LID--------MVDAGKTNLRRVTYLVMDEADRM---LDMGFE--------PQIRK 300

Query: 517 EWNCLRP--TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
               +RP   T++ SAT         G +     Q  I    +     V   +E+ +   
Sbjct: 301 ILQQIRPDRQTLMFSATWPKEVQRLAGDFLNNYAQVNIGSTELAANHNVKQIIEVCTEFE 360

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +   +   +   + +  ++++   TKR+A+DLT++L +       +H + +  ER  ++ 
Sbjct: 361 KKGKLIGHLETISAENGKVIIFTSTKRVADDLTKFLRQDGWPALAIHGDKQQQERDWVLA 420

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + + G+  ++V   +   GLD+ +   V   D     F  +    +  IGR  R   +  
Sbjct: 421 EFKSGRSPIMVATAVASRGLDVKDISYVINYD-----FPTNTEDYVHQIGRTGRAGRTGT 475

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
                T   S        + R    +    K  I P+ ++E
Sbjct: 476 AYTYFTPENS-------KSARELIGILREAKQEI-PREIEE 508


>gi|24644481|ref|NP_731031.1| Rm62, isoform D [Drosophila melanogaster]
 gi|281361218|ref|NP_001163528.1| Rm62, isoform H [Drosophila melanogaster]
 gi|23175946|gb|AAN14331.1| Rm62, isoform D [Drosophila melanogaster]
 gi|51092049|gb|AAT94438.1| RE56857p [Drosophila melanogaster]
 gi|272476832|gb|ACZ94826.1| Rm62, isoform H [Drosophila melanogaster]
          Length = 575

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 13/164 (7%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++                 +++ +  +I   ++   +I++ V TKR  +
Sbjct: 348 LELSANHNIRQVVDVCDEFSKE-------EKLKTLLSDIYDTSESPGKIIIFVETKRRVD 400

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L  ++    +R   +H +    ER  ++R+ R GK ++LV  ++   GLD+     V  
Sbjct: 401 NLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVIN 460

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            D     + ++    I  IGR  R+ N+K   +A     + + A
Sbjct: 461 FD-----YPQNSEDYIHRIGRTGRS-NTKGTSFAFFTKNNAKQA 498


>gi|54298236|ref|YP_124605.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
 gi|53752021|emb|CAH13447.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
          Length = 589

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 97/289 (33%), Gaps = 42/289 (14%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           +    + SAT   + + Q     +       IR        +E R     V    D +  
Sbjct: 180 KKQMALFSAT-MPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIR 238

Query: 578 AAQ-QGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             + +  + +++ V TK   E++ E L +  +R   +H ++    R  II   + G  D+
Sbjct: 239 VLEVEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDI 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLD+     V   D   +       + +  IGR  R   S V IL+     
Sbjct: 299 LVATDVAARGLDVERVTHVINYDMPHDN-----ETYVHRIGRTGRAGRSGVTILFVTPKE 353

Query: 695 KSIQLAIDETTRRR----------EKQLEHNKK--HNINPQ-------SVKEKIMEVIDP 735
             +  +I+  TR+R            Q+   ++   NI  +       S K  + E I  
Sbjct: 354 SRLISSIERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEEYIKE 413

Query: 736 ILLEDAATTNISIDAQQLSLS-KKKGKAHLKSLRKQMHLAADNLNFEEA 783
             +                +  +K+           M  AA     E A
Sbjct: 414 HDVSAVDVAAALALLLHKDMPWRKELN---------MPKAASAFKEERA 453


>gi|82196760|sp|Q5U526|I4A3A_XENLA RecName: Full=Eukaryotic initiation factor 4A-III-A;
           Short=eIF-4A-III-A; Short=eIF4A-III-A; AltName:
           Full=ATP-dependent RNA helicase DDX48-A; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3-A; AltName:
           Full=DEAD box protein 48-A; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3 A
 gi|54311504|gb|AAH84859.1| Unknown (protein for MGC:85498) [Xenopus laevis]
          Length = 415

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
                ++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 215 ATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 274

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 275 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 329

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 330 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGGKGVAINF 384

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 385 VKNDDIRILRDIEQ 398


>gi|24644485|ref|NP_731033.1| Rm62, isoform C [Drosophila melanogaster]
 gi|24644487|ref|NP_731034.1| Rm62, isoform F [Drosophila melanogaster]
 gi|45551833|ref|NP_731035.2| Rm62, isoform B [Drosophila melanogaster]
 gi|10727151|gb|AAG22212.1| Rm62, isoform F [Drosophila melanogaster]
 gi|23175947|gb|AAN14332.1| Rm62, isoform C [Drosophila melanogaster]
 gi|25012758|gb|AAN71471.1| RE68337p [Drosophila melanogaster]
 gi|45446365|gb|AAF51926.2| Rm62, isoform B [Drosophila melanogaster]
 gi|220950572|gb|ACL87829.1| Rm62-PB [synthetic construct]
          Length = 578

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 13/164 (7%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++                 +++ +  +I   ++   +I++ V TKR  +
Sbjct: 351 LELSANHNIRQVVDVCDEFSKE-------EKLKTLLSDIYDTSESPGKIIIFVETKRRVD 403

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L  ++    +R   +H +    ER  ++R+ R GK ++LV  ++   GLD+     V  
Sbjct: 404 NLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVIN 463

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            D     + ++    I  IGR  R+ N+K   +A     + + A
Sbjct: 464 FD-----YPQNSEDYIHRIGRTGRS-NTKGTSFAFFTKNNAKQA 501


>gi|229074285|ref|ZP_04207329.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
 gi|229094946|ref|ZP_04225949.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
 gi|229113900|ref|ZP_04243333.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
 gi|228669561|gb|EEL24970.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
 gi|228688479|gb|EEL42354.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
 gi|228708837|gb|EEL60966.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
          Length = 529

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  ++E    ++      + + EK+   I+   L         +  +  
Sbjct: 351 QLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|237845101|ref|XP_002371848.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|211969512|gb|EEB04708.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|221501473|gb|EEE27248.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
          Length = 657

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 11/181 (6%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEI 575
            +  T++ SAT      E  +  +++ ++   G      +D   E+   + Q   +   +
Sbjct: 394 HQRQTLLFSATMPRKIQEFAKSALIDPLVVNVGRAGAANLDVVQEVEYVK-QENKLPYLL 452

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   +    +L+    K+  +D+ EYL  + +    +H  +   ER E +R  R G+ DV
Sbjct: 453 HCLQKTAPPVLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSEAVRAFREGRKDV 512

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LVG ++  +GLD P    V   D  KE       + +  IGR  R   + V        +
Sbjct: 513 LVGTDVASKGLDFPAIQHVINFDMPKE-----IENYVHRIGRTGRCGRTGVATTFVNKNQ 567

Query: 696 S 696
            
Sbjct: 568 E 568


>gi|255950086|ref|XP_002565810.1| Pc22g19070 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592827|emb|CAP99195.1| Pc22g19070 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 682

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 13/172 (7%)

Query: 524 TTIVVSAT-PGSWEL---EQCQGIIVEQIIR---PTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   ++   +  +  I   + R    +  +   VE      +   + D ++
Sbjct: 398 QTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVEYVEDADKRSVLLDILH 457

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                GL  L+ V TKRMA+ L+++L  +      +H +    ER   +   R G+  +L
Sbjct: 458 THGSTGL-TLIFVETKRMADSLSDFLINQRFPATAIHGDRTQRERERALELFRNGRCPIL 516

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V   +   GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 517 VATAVAARGLDIPNVTHVINYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 563


>gi|30018496|ref|NP_830127.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|29894036|gb|AAP07328.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
          Length = 514

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 157 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 216

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 217 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 276

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 277 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 331

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  +++    ++      + + EK+   I+   L         +  +  
Sbjct: 332 QLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEEND 391

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 392 SVTV--VAAALKMMTKE 406


>gi|255553305|ref|XP_002517695.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223543327|gb|EEF44859.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 585

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 77/205 (37%), Gaps = 15/205 (7%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII----RP 551
            L + GF      D+    F  +   R  T++ SAT  +      +  +V+ +I    R 
Sbjct: 306 RLVDLGFE-----DDIREIFSYFKAQR-QTLLFSATMPTKVQNFAKSALVKPVIVNVSRA 359

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
                  ++      Q +     +    +   ++L+   +K   + + EYL  + + V  
Sbjct: 360 GAANLDVIQEIEYVKQEDKTAYLLKCLEKTPPQVLIFCESKADVDKIHEYLLLKGVEVVA 419

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +H      ER   I   + GK DVL+  +++ +GLD P+   V   D   E       + 
Sbjct: 420 IHGGKDQEEREYAISSFKSGKKDVLIATDVVSKGLDFPDIQHVINYDMPAE-----IENY 474

Query: 672 IQTIGRAARNVNSKVILYADTITKS 696
           +  IGR  R   + +        +S
Sbjct: 475 VHRIGRTGRCGKTGIATTFINKNQS 499


>gi|92081528|dbj|BAE93311.1| zinc finger protein [Ciona intestinalis]
          Length = 556

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 14/186 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR--------PTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      +     + E  +             V   V     + +   + + I
Sbjct: 297 HTLMFSATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWKDKRSKLLELI 356

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +   R L+ V TKR A+ L   L + +     +H +    +R + +RD +L    +
Sbjct: 357 ADVNETKSRTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQQDREQALRDFKLAVCPI 416

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTIT 694
           LV  ++   GLDIP+   V   D  +E         +  IGR  R  N  +   + D   
Sbjct: 417 LVATSVAARGLDIPKVEHVINYDMPRE-----IDEYVHRIGRTGRCGNLGRATTFFDNKK 471

Query: 695 KSIQLA 700
             I LA
Sbjct: 472 TQIWLA 477


>gi|308322209|gb|ADO28242.1| eukaryotic initiation factor 4a-iii [Ictalurus furcatus]
          Length = 406

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 206 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 265

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 266 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 320

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 321 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 375

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 376 VKNDDIRILRDIEQ 389


>gi|307208568|gb|EFN85902.1| Eukaryotic initiation factor 4A-III [Harpegnathos saltator]
          Length = 403

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               ++VSAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 203 ATQVVLVSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 262

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 263 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRS 317

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 318 GASRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVSINF 372

Query: 690 ADTITKSIQLAIDE 703
             T    I   I++
Sbjct: 373 VKTDDIRILRDIEQ 386


>gi|20149756|ref|NP_619610.1| eukaryotic initiation factor 4A-III [Mus musculus]
 gi|42560197|sp|Q91VC3|IF4A3_MOUSE RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|14198152|gb|AAH08132.1| Eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|15277517|gb|AAH12862.1| Eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|74138617|dbj|BAE27130.1| unnamed protein product [Mus musculus]
 gi|74142343|dbj|BAE31931.1| unnamed protein product [Mus musculus]
 gi|74146845|dbj|BAE41387.1| unnamed protein product [Mus musculus]
 gi|74186129|dbj|BAE34233.1| unnamed protein product [Mus musculus]
 gi|74188979|dbj|BAE39256.1| unnamed protein product [Mus musculus]
 gi|74212198|dbj|BAE40258.1| unnamed protein product [Mus musculus]
 gi|74214032|dbj|BAE29433.1| unnamed protein product [Mus musculus]
 gi|74220630|dbj|BAE31525.1| unnamed protein product [Mus musculus]
 gi|122889626|emb|CAM14996.1| eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|123264877|emb|CAM18884.1| eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|148702746|gb|EDL34693.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48 [Mus musculus]
          Length = 411

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 211 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 270

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 271 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 325

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 326 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 380

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 381 VKNDDIRILRDIEQ 394


>gi|99032027|pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032028|pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032029|pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032030|pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
          Length = 434

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 84/254 (33%), Gaps = 32/254 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++        VD + +T      +   +  R     + GF      D R +   
Sbjct: 186 TPGRLLDF--------VDRTFITFEDTRFVVLDEADRM---LDMGF----SEDMRRIMTH 230

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV--------DPPVEIRSARTQV 568
                   T++ SAT            +   +    G+V            E+     + 
Sbjct: 231 VTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRS 290

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +     I + ++Q    ++ V TKR A+ L  +L E+      +H +    +R + +RD 
Sbjct: 291 K----LIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDF 346

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G   VL+  ++   GLDI     V   D             +  IGR  R  N+    
Sbjct: 347 KNGSMKVLIATSVASRGLDIKNIKHVINYD-----MPSKIDDYVHRIGRTGRVGNNGRAT 401

Query: 689 YADTITKSIQLAID 702
                 K   +A D
Sbjct: 402 SFFDPEKDRAIAAD 415


>gi|220681310|gb|ACL80031.1| vasa-like protein [Bombyx mori]
          Length = 468

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 90/231 (38%), Gaps = 18/231 (7%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           FV+ + V+   +  +   +  R     + GF +PS      L        +  T++ SAT
Sbjct: 188 FVERNRVSFGSVRFVVLDEADRM---LDMGF-MPSIEKMM-LHPTMVETTKRQTLMFSAT 242

Query: 532 PGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ--GLRI 585
               +++   G  +   +       G     VE         +  + +    ++  G RI
Sbjct: 243 -FPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLIEENDGKRI 301

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ +   L E+ +    +H +    ER E +++ + GK  +LV   +   G
Sbjct: 302 LVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARG 361

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITK 695
           LDI    +V   D  K     S    +  IGR  R  N  K + + D+   
Sbjct: 362 LDIKNVDIVVNYDLPK-----SIDEYVHRIGRTGRVGNRGKAVSFYDSDQD 407


>gi|148975750|ref|ZP_01812581.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
 gi|145964823|gb|EDK30075.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
          Length = 551

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 92/261 (35%), Gaps = 28/261 (10%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   ++++           Q+  +   +  R     + GF      D R  +  
Sbjct: 130 TPGRLLDLYNQNAV--------RFDQLEILVLDEADRM---LDMGFI----RDIR--KIL 172

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDV 571
            +   +   ++ SAT         +G++   VE  + P       VE  I     + +  
Sbjct: 173 AFLPKKRQNLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAKTVEQSIYPVDKK-KKS 231

Query: 572 YDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                L      R +L+   TK  A  L  +L E+ I    +H       R + + + + 
Sbjct: 232 PMLAKLIKDNDWRQVLVFSKTKHGANKLARFLDEQGITAAPIHGNKSQGARTKALENFKT 291

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           GK  VLV  ++   G+DIP+   V   D             I   GRA     +  ++ A
Sbjct: 292 GKVRVLVATDIAARGIDIPQLPQVVNFDLPHVS--EDYVHRIGRTGRAGEVGKAISLVCA 349

Query: 691 DTITK--SIQLAIDETTRRRE 709
           D + +   I+  I +   RRE
Sbjct: 350 DEVGELFGIERLIQQVLERRE 370


>gi|47218719|emb|CAG05691.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 727

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 100/282 (35%), Gaps = 31/282 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII------VEQII 549
            + + GF      +   L +++     P T++ SAT   W  +  +  +      V+ I 
Sbjct: 311 QMLDMGFA-EQVEEILALSYKKDADTNPQTLLFSATCPPWVYDVAKKYMRPSCKHVDLIG 369

Query: 550 RPTGLVDPPVEIRSARTQVED----VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           + T      VE  +           + D I + +    R ++   TK+ A +L       
Sbjct: 370 KKTQKAATTVEHLAIACHWSQRAAVIGDVIRVYSGSHGRAIVFCETKKEANELA-LNASI 428

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
               + +H ++   +R   ++  R G F+VLV  N+   GLDIPE  LV      K+   
Sbjct: 429 KQNAQSLHGDIPQKQRETTLKGFRKGSFEVLVATNVAARGLDIPEVDLVVQCSPPKDV-- 486

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH-NKKHNINPQS 724
               S I   GR  R   + + +                 R+ E QL +   K  I  + 
Sbjct: 487 ---ESYIHRSGRTGRAGRTGICICFY-------------QRKEEDQLRYVENKAGITFRR 530

Query: 725 VKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKS 766
           V       I     +DA     SI    +   ++  +  ++ 
Sbjct: 531 VGVPTANDIIKSSSKDAVRFLDSISVAAIGYFREAAEKLIEE 572


>gi|71656970|ref|XP_817024.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70882190|gb|EAN95173.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 798

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 67/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQ----VEDVYDEI 575
            T++ SAT     L   +  + +     T    G     +  +  R Q    ++ +++ I
Sbjct: 529 QTLMFSATFPQRILNLAKRYLRQHYYLLTVGRVGSTTKNITQKIVRVQESEKMDKLFEVI 588

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               Q  L +L+ V TKR AE+L   L    I    +H + +  +R   +RD + G   +
Sbjct: 589 YQQKQTDL-VLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRDFKDGITPI 647

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLD+P    V   D  KE            IGR  R  N            
Sbjct: 648 LVATDVASRGLDVPNVAHVIQYDLPKE-----MDDYTHRIGRTGRAGNKGTATSFYNKNN 702

Query: 696 S 696
            
Sbjct: 703 R 703


>gi|299117107|emb|CBN73878.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 467

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 82/211 (38%), Gaps = 22/211 (10%)

Query: 524 TTIVVSAT-PGSWE-LEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT P   E L +       Q+      +     +   VEI     +   +   +
Sbjct: 241 QTLMWSATWPKEVEGLARDFLRNYYQVTVGSLELSANKDIQQVVEIVEDFGKYRVLAKHL 300

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G R+L+ V TK+  + LT  L         +H +    ER  ++ D + G+  +
Sbjct: 301 QEHNNAG-RVLIFVETKKGCDALTRSLRHEGWPALAIHGDKNQSERDRVLHDFKEGRSLI 359

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
           LV  ++   GLD+ +  +V   D  KE       S +  IGR  R  +    +  +A   
Sbjct: 360 LVATDVAARGLDVKDIRMVINFDFPKE-----MESYVHRIGRCGRAGHKGTAISFFAGKN 414

Query: 694 TKSIQLAIDETTR-----RREKQL-EHNKKH 718
           +K  +  I    +     RR +QL  ++  H
Sbjct: 415 SKCARELIRILKQANQKPRRPRQLVVYDDNH 445


>gi|258405811|ref|YP_003198553.1| transcription-repair coupling factor [Desulfohalobium retbaense DSM
           5692]
 gi|257798038|gb|ACV68975.1| transcription-repair coupling factor [Desulfohalobium retbaense DSM
           5692]
          Length = 1153

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 134/341 (39%), Gaps = 36/341 (10%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I + ++   + +K  L +G +G G    +A+ + A  R  + + P +    + +S    F
Sbjct: 3   IPKEIQSFLASDKRALQVGKSGIGSQACVAQGMLAKGRNVVAVFPGQKELDRFWSLVTLF 62

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
              +  E  +    + + +A+ P + T  E+  +    + R+       L  +   + ++
Sbjct: 63  SGQSEQEGVLWERPWVKLDAFRPGS-TRTEQWGARWAALSRL------KLGSQPCGLALT 115

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
           + + +      E   Q  + L + + +E +++ + LV   Y R  +    G F V GD +
Sbjct: 116 ADNFLPYWPPSELVDQAYLYLVLNEDIEIEDIATQLVAWGYDRVGMVTRFGEFAVRGDIL 175

Query: 337 EIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTA 395
           +I+ P +  +   R+  FG+ +E I  F PL+ +  +++  + +   +  +      +  
Sbjct: 176 DIYTPGY--ESPVRLEFFGDTLEGIRLFEPLSQRSKQSMTEVTVMPAAPALGGGHERDR- 232

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
              I+++       L   G L   ++++ R+   LE  E                     
Sbjct: 233 ---IRDKWH----HLWTTGAL--DKQVKARLEQHLEDGEAG------------FWPGLYY 271

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           + P  L +++P D +  + E+      +      +  R  T
Sbjct: 272 QRPVLLEDWLPSDPVFMLCEADT----LRSYLEEEAGRWQT 308



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 65/215 (30%), Gaps = 17/215 (7%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPT----------TIVVSATPGSWELEQC-QGII 544
            L     RLP          + +                 + ++ATP    L+    G+ 
Sbjct: 720 RLLSQDVRLPQQSLLILDEEQRFGVKHKEKLKEIRKTLDVLTLTATPIPRTLQLSLSGVR 779

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
              +I         VE      +   + + +     +G ++       R   ++ + +  
Sbjct: 780 SLSVIETPPPERKAVESSLIEREPGRLQEILQREVDRGGQVFFVHNRVRGLAEVRDMVQH 839

Query: 605 RNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
                R    H ++      E +     G+ D+LV   ++  GLD P    + +  A   
Sbjct: 840 LVPEARVGMAHGQMAERRLEESMHRFWHGELDILVCTAIIESGLDFPRANTLIVDQAHMF 899

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           G  +    L Q  GR  R+       +      ++
Sbjct: 900 GLGQ----LYQLRGRVGRSKRQAYAYFVVPSLDNL 930


>gi|92081444|dbj|BAE93269.1| RNA helicase [Tubifex tubifex]
          Length = 402

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 90/235 (38%), Gaps = 33/235 (14%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS--CMDNRPLRFEEW 518
           L ++I +  L        ++ ++      +  R     + GF LP+   + N      + 
Sbjct: 104 LLDFIRKGYL--------SLAKVKYFILDEADRM---LDMGF-LPNMMALANELGMPAKT 151

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIR----SARTQVED 570
                 T++ SAT    E++Q    ++   I  T    G  +  +E          + E 
Sbjct: 152 ER---QTLMFSAT-FPEEVQQLAKELLNDYIFVTVGRVGGANTDIEQHVLQVDQFNKREK 207

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +N   QQ  R L+ V  KR A+ +  YL +       +H + +  ER E +RD + 
Sbjct: 208 LVSILNSQGQQ--RTLVFVEQKRQADFIASYLSQSEFPTTSIHGDREQREREEALRDFKN 265

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           G   +LV  ++   GLDIP    V   D       +S    +  IGR  R  N  
Sbjct: 266 GTAPILVATSVAARGLDIPGVNHVINFD-----MPQSIDEYVHRIGRTGRCGNLG 315


>gi|60115443|dbj|BAD90012.1| DEAD box RNA helicase [Tubifex tubifex]
          Length = 396

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 90/235 (38%), Gaps = 33/235 (14%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS--CMDNRPLRFEEW 518
           L ++I +  L        ++ ++      +  R     + GF LP+   + N      + 
Sbjct: 98  LLDFIRKGYL--------SLAKVKYFILDEADRM---LDMGF-LPNMMALANELGMPAKT 145

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIR----SARTQVED 570
                 T++ SAT    E++Q    ++   I  T    G  +  +E          + E 
Sbjct: 146 ER---QTLMFSAT-FPEEVQQLAKELLNDYIFVTVGRVGGANTDIEQHVLQVDQFNKREK 201

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +N   QQ  R L+ V  KR A+ +  YL +       +H + +  ER E +RD + 
Sbjct: 202 LVSILNSQGQQ--RTLVFVEQKRQADFIASYLSQSEFPTTSIHGDREQREREEALRDFKN 259

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           G   +LV  ++   GLDIP    V   D       +S    +  IGR  R  N  
Sbjct: 260 GTAPILVATSVAARGLDIPGVNHVINFD-----MPQSIDEYVHRIGRTGRCGNLG 309


>gi|73969117|ref|XP_860802.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 14 [Canis
           familiaris]
          Length = 614

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 396 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 449

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 450 QA------RELIKVLEEANQAINPK 468


>gi|302789414|ref|XP_002976475.1| hypothetical protein SELMODRAFT_105510 [Selaginella moellendorffii]
 gi|300155513|gb|EFJ22144.1| hypothetical protein SELMODRAFT_105510 [Selaginella moellendorffii]
          Length = 613

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 21/194 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT    E+++     +   I          T L+   VE      +   + D I
Sbjct: 344 QTMLFSAT-FPREIQRLAADFLYNYIFLAVGRVGSSTDLIVQRVEYVHDVDKRSMLMDMI 402

Query: 576 NLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +     GL      IL+ V TKR A+ L ++L +  I    +H +   +ER   +R  R 
Sbjct: 403 HAQKPNGLNGQLPLILVFVETKRGADSLEDWLIQMGISATTIHGDRTQVEREHALRSFRT 462

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VIL 688
           G   +LV  ++   GLDIP    V   D             +  IGR  R   S      
Sbjct: 463 GVTPILVATDVAARGLDIPHVAHVINYD-----LPSDIDDYVHRIGRTGRAGKSGFATAF 517

Query: 689 YADTITKSIQLAID 702
           + D  T   +  +D
Sbjct: 518 FTDKDTSLARPLVD 531


>gi|238021260|ref|ZP_04601686.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147]
 gi|237868240|gb|EEP69246.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147]
          Length = 449

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 78/198 (39%), Gaps = 25/198 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   +E   A+ ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKNPEVI--EIERAEAQGKIEEQLLYCDDRNHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E L + LYE+      +H ++    R   + D+R G
Sbjct: 236 LLDHILRDANIDQCVIFTATKAMTETLADELYEKGFAANCLHGDMPQGWRNRTLMDVRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + + +A
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAVSFA 350

Query: 691 DTITKSIQLAIDETTRRR 708
           D     +   I+    R+
Sbjct: 351 DAKEYMMVHKIERYINRK 368


>gi|167391022|ref|XP_001733479.1| ATP-dependent RNA helicase DDX3X [Entamoeba dispar SAW760]
 gi|165896682|gb|EDR24029.1| ATP-dependent RNA helicase DDX3X, putative [Entamoeba dispar
           SAW760]
          Length = 392

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 74/184 (40%), Gaps = 13/184 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVED--VYDE 574
           +  T++ SAT            +   +    G     VE     I     Q++   + D 
Sbjct: 123 KRQTLMFSATFPKQIQRLAADFLDNYVFITVGRAGSTVESIQQIILWVEEQIKQEAILDV 182

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +   A +G + ++ V TK+ A+ L  YLY+   +V  +H +    +R   ++  +     
Sbjct: 183 LREFAGKGEKTVIFVETKKGADMLENYLYDHGYKVDSIHGDRSQADRDFSLKRFKENVIQ 242

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           +LV  ++   GLDIP+  +V   D   E       S +  +GR  R       I + +  
Sbjct: 243 LLVATDVASRGLDIPDIEVVINYDMPNE-----IESYVHRVGRTGRAGKKGTAITFINDK 297

Query: 694 TKSI 697
           T+++
Sbjct: 298 TQNL 301


>gi|60652753|gb|AAX29071.1| DEAD box polypeptide 48 [synthetic construct]
          Length = 412

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 211 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 270

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 271 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 325

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 326 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 380

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 381 VKNDDIRILRDIEQ 394


>gi|254497847|ref|ZP_05110613.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
 gi|254352925|gb|EET11694.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
          Length = 584

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 77/191 (40%), Gaps = 9/191 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E++ E L ++ +R   +H ++    R  II   R G  D+LV  ++   
Sbjct: 248 VIVFVRTKSSTEEVAELLQQQGLRAMAIHGDITQALRERIIAQFRQGAIDILVATDVAAR 307

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           GLD+     V   D           + +  IGR  R   S V IL+       +  +++ 
Sbjct: 308 GLDVERVTHVINYD-----LPHDNETYVHRIGRTGRAGRSGVAILFVTPKESRLISSVER 362

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA--QQLSLSKKKGK 761
            TR+R  ++     H I     +  +  +   +  E+  +    ++   ++  +S     
Sbjct: 363 HTRQRITKVNVPNDHMIQVARQQRFMANITARLEHENIHSYRKIVEEYIKEHEVSAVDVA 422

Query: 762 AHLK-SLRKQM 771
           A L   L K M
Sbjct: 423 ATLALLLHKDM 433


>gi|242007840|ref|XP_002424727.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus
           corporis]
 gi|212508220|gb|EEB11989.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus
           corporis]
          Length = 449

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 79/189 (41%), Gaps = 16/189 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
             I++SAT     LE  +  +   I        +   G+    + +     + E + D  
Sbjct: 251 QVILLSATMPHDVLEVSKKFMRNPINILVQKDELTLEGIKQFYISVEREEWKFETLCDLY 310

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   + ++   T+R  + LT+++++++  V  MH +++  ER  I+R  R G   V
Sbjct: 311 ETLTIT--QAVIFCNTRRKVDMLTDFMHKKDFTVSAMHGDMEQREREFIMRQFRSGSSRV 368

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           L+  +LL  G+D+ +  LV   D        ++ + I  IGR+ R     V I +     
Sbjct: 369 LITTDLLARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINFVTEQD 423

Query: 695 KSIQLAIDE 703
           K     I++
Sbjct: 424 KRTLNDIEQ 432


>gi|24644483|ref|NP_731032.1| Rm62, isoform E [Drosophila melanogaster]
 gi|320542448|ref|NP_001189182.1| Rm62, isoform I [Drosophila melanogaster]
 gi|10727150|gb|AAF51927.2| Rm62, isoform E [Drosophila melanogaster]
 gi|257286223|gb|ACV53058.1| LP18603p [Drosophila melanogaster]
 gi|318068719|gb|ADV37273.1| Rm62, isoform I [Drosophila melanogaster]
          Length = 578

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 13/164 (7%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++                 +++ +  +I   ++   +I++ V TKR  +
Sbjct: 351 LELSANHNIRQVVDVCDEFSKE-------EKLKTLLSDIYDTSESPGKIIIFVETKRRVD 403

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L  ++    +R   +H +    ER  ++R+ R GK ++LV  ++   GLD+     V  
Sbjct: 404 NLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVIN 463

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            D     + ++    I  IGR  R+ N+K   +A     + + A
Sbjct: 464 FD-----YPQNSEDYIHRIGRTGRS-NTKGTSFAFFTKNNAKQA 501


>gi|167393063|ref|XP_001740410.1| ATP-dependent RNA helicase DBP1 [Entamoeba dispar SAW760]
 gi|165895499|gb|EDR23175.1| ATP-dependent RNA helicase DBP1, putative [Entamoeba dispar SAW760]
          Length = 281

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 74/184 (40%), Gaps = 13/184 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVED--VYDE 574
           +  T++ SAT            +   +    G     VE     I     Q++   + D 
Sbjct: 24  KRQTLMFSATFPKQIQRLAADFLDNYVFITVGRAGSTVESIQQIILWVEEQIKQEAILDV 83

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +   A +G + ++ V TKR A+ L  YLY+   +V  +H +    +R   ++  +     
Sbjct: 84  LREFAGKGEKTVIFVETKRGADMLENYLYDHGYKVDSIHGDRSQADRDFSLKRFKENVIQ 143

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           +LV  ++   GLDIP+  +V   D   E       S +  +GR  R       I + +  
Sbjct: 144 LLVATDVASRGLDIPDIEVVINYDMPNE-----IESYVHRVGRTGRAGKKGTAITFINDK 198

Query: 694 TKSI 697
           T+++
Sbjct: 199 TQNL 202


>gi|40788956|dbj|BAA04879.2| KIAA0111 [Homo sapiens]
          Length = 412

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 212 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 271

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 272 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 326

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 327 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 381

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 382 VKNDDIRILRDIEQ 395


>gi|169781778|ref|XP_001825352.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Aspergillus
           oryzae RIB40]
 gi|91207409|sp|Q2U2J6|PRP5_ASPOR RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|83774094|dbj|BAE64219.1| unnamed protein product [Aspergillus oryzae]
          Length = 1186

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 90/264 (34%), Gaps = 34/264 (12%)

Query: 523 PTTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEI 575
             T++ SAT P + E    +     VE ++    +V P +    E+RS   +   + + +
Sbjct: 736 KQTVLFSATFPRNMEALARKTLNKPVEIVVGGRSVVAPEITQIVEVRSEDKKFIRLLELL 795

Query: 576 NLAAQQGL----RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       R L+ V  +  A+ L   L  +      +H     ++R   I D + G
Sbjct: 796 GNLYSTDENEDARALIFVERQEGADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAG 855

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
            F VL+  ++   GLD+ +  LV   DA            +   GR  R  N+   +   
Sbjct: 856 IFPVLIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF- 909

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNI--NPQSVKEKIMEVIDPILLEDAATTNISID 749
                    + E   R    +    K +    P+ V++ +   ++ +       +     
Sbjct: 910 ---------LTEDQERYSVDIAKALKQSGQSVPEPVQKMVDSFLEKVKAGKEKASASGFG 960

Query: 750 AQQLSLSKKKGKAHLKSLRKQMHL 773
            + L    ++  A       +M  
Sbjct: 961 GKGLERLDQERDA------ARMRE 978


>gi|68069123|ref|XP_676472.1| RNA helicase-1 [Plasmodium berghei strain ANKA]
 gi|56496186|emb|CAH99280.1| RNA helicase-1, putative [Plasmodium berghei]
          Length = 393

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 94/251 (37%), Gaps = 27/251 (10%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP--TTIVVS 529
            +D+ H+ + ++      +          GF        +   +E +  L P     + S
Sbjct: 155 MIDKRHLGVDRLKLFILDEADEM---LSRGF--------KAQIYEVFKKLVPDIQVALFS 203

Query: 530 ATPGSWELEQC-------QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
           AT     LE         + I+V++       +   V +     +++ + D         
Sbjct: 204 ATMPQEILELTTRFMRDPKTILVKKDELTLEGIQFYVAVEKEEWKLDTLCDLYETLTIT- 262

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++   T++  + LT+ ++ R   V  MH ++   +R  I+R+ R G   VLV  +LL
Sbjct: 263 -QSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLL 321

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
             G+D+ +  LV   D        S  + I  IGR+ R     V +   T     +  + 
Sbjct: 322 ARGIDVQQVSLVINYD-----LPCSPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKLK 376

Query: 703 ETTRRREKQLE 713
           +       Q+E
Sbjct: 377 KIESYYSTQIE 387


>gi|89072916|ref|ZP_01159473.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89051438|gb|EAR56893.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 654

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 8/130 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 275 IVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVVARG 334

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSIQLAIDET 704
           LD+P    V   D   +       S I  IGR  R     K IL   T    +   I+  
Sbjct: 335 LDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTIERV 389

Query: 705 TRRR--EKQL 712
           T+ R  E QL
Sbjct: 390 TKSRMEEIQL 399


>gi|330861383|emb|CBX71616.1| hypothetical protein YEW_FK23230 [Yersinia enterocolitica W22703]
          Length = 185

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 74/178 (41%), Gaps = 14/178 (7%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE    P +++ P+   A +L  E + F PH       S ++    +
Sbjct: 22  LTGSACAVECAEIIERHDGPVMLITPDMQTALRLRDEIQQFSPHPVNTL--SDWETLPYD 79

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIV 295
           ++ P  D        I+ ++  + H  T         I++   + +  +   E      +
Sbjct: 80  SFSPHQDI-------ISARLSCLYHLPT----MERGVIILPINTLMQRVCPHEFLHGHAL 128

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            +K G  + + +L + L +  Y+  D  +  G F   G  ++++P   E+  +R+  F
Sbjct: 129 VMKKGQHLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEE-PYRIDFF 185


>gi|302754310|ref|XP_002960579.1| hypothetical protein SELMODRAFT_164382 [Selaginella moellendorffii]
 gi|302771598|ref|XP_002969217.1| hypothetical protein SELMODRAFT_91413 [Selaginella moellendorffii]
 gi|300162693|gb|EFJ29305.1| hypothetical protein SELMODRAFT_91413 [Selaginella moellendorffii]
 gi|300171518|gb|EFJ38118.1| hypothetical protein SELMODRAFT_164382 [Selaginella moellendorffii]
          Length = 401

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             ++VSAT     LE     + + +        +   G+    V +     + +   D+Y
Sbjct: 203 QVVLVSATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLY 262

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  E L+E +   N  V  MH E+   ER  I+++ R G+
Sbjct: 263 DTLTIT-----QAVIFCNTKRKVEWLSEKMRSSNFTVSSMHGEMPQKERDTIMKEFREGQ 317

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VL+  ++   GLD+ +  LV   D        S+   I  IGR+ R     V I +  
Sbjct: 318 TRVLITTDVWARGLDVQQVSLVINYD-----LPNSRELYIHRIGRSGRFGRKGVAINFVK 372

Query: 692 TITKSIQLAIDE 703
                I   I++
Sbjct: 373 NDDIRILRDIEQ 384


>gi|115730751|ref|XP_786504.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21a
           [Strongylocentrotus purpuratus]
 gi|115943987|ref|XP_001179633.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21a
           [Strongylocentrotus purpuratus]
          Length = 657

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 117/322 (36%), Gaps = 43/322 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGM-YRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
            P  + +YI +++L      HV + ++  M   G       +    ++     +N     
Sbjct: 229 TPGRILDYIRKNTLDLSKLKHVVLDEVDRMLDMGFAESVEEILGAAYKTEEAPNN----- 283

Query: 516 EEWNCLRPTTIVVSATPGSW-----------ELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
                  P T++ SAT   W           +L++   +  +++   T +    +   S 
Sbjct: 284 -------PQTLLFSATVPPWVYQTAVKYMRKDLKKVDLVGRDRMKTATTVQHLAINC-SY 335

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             + + + D I +      R ++   TKR A +L     +     + MH ++   +R   
Sbjct: 336 FDRPQVISDVIKVYGGLDGRCMVFCETKRDANELAMS-SDVKQETQVMHGDIPQTQREVT 394

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           ++  R GKF  LV  ++   GLDIPE  LV   +  ++       S I   GR  R   +
Sbjct: 395 LKGFREGKFQCLVTTDVAARGLDIPEVDLVIQCNPPRDV-----DSYIHRSGRTGRAGRN 449

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
            V +                  R  +++E+  K  I  + V       I    ++D    
Sbjct: 450 GVCVCFYK----------RQEERDLQKVEY--KAGIKFKRVSAPQPSDIIKSSVKDVTDL 497

Query: 745 NISIDAQQLSLSKKKGKAHLKS 766
             ++  + +++ K   +A +  
Sbjct: 498 LGAVQPEMVAMFKSAAEAIIAE 519


>gi|114794876|pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
           A Resolution
 gi|114794877|pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
           A Resolution
 gi|116668327|pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
           A Resolution
          Length = 410

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 210 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 269

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 270 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 324

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 325 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 379

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 380 VKNDDIRILRDIEQ 393


>gi|73620773|sp|Q4R3Q1|IF4A3_MACFA RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|67971846|dbj|BAE02265.1| unnamed protein product [Macaca fascicularis]
          Length = 411

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 211 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 270

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 271 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 325

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 326 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 380

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 381 VKNDDIRILRDIEQ 394


>gi|7661920|ref|NP_055555.1| eukaryotic initiation factor 4A-III [Homo sapiens]
 gi|109118862|ref|XP_001110130.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Macaca
           mulatta]
 gi|297701955|ref|XP_002827960.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Pongo abelii]
 gi|332263899|ref|XP_003280987.1| PREDICTED: eukaryotic initiation factor 4A-III [Nomascus
           leucogenys]
 gi|20532400|sp|P38919|IF4A3_HUMAN RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           initiation factor 4A-like NUK-34; AltName:
           Full=Eukaryotic translation initiation factor 4A isoform
           3; AltName: Full=Nuclear matrix protein 265; Short=NMP
           265; Short=hNMP 265
 gi|295982193|pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
           Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
           Machinery
 gi|295982194|pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
           Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
           Machinery
 gi|13177790|gb|AAH03662.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|13325146|gb|AAH04386.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|15029856|gb|AAH11151.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|48145617|emb|CAG33031.1| DDX48 [Homo sapiens]
 gi|60655857|gb|AAX32492.1| DEAD-box polypeptide 48 [synthetic construct]
 gi|119609990|gb|EAW89584.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, isoform CRA_a [Homo
           sapiens]
 gi|119609991|gb|EAW89585.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, isoform CRA_a [Homo
           sapiens]
 gi|158254648|dbj|BAF83297.1| unnamed protein product [Homo sapiens]
 gi|168274374|dbj|BAG09607.1| eukaryotic initiation factor 4A-III [synthetic construct]
          Length = 411

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 211 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 270

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 271 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 325

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 326 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 380

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 381 VKNDDIRILRDIEQ 394


>gi|71662019|ref|XP_818022.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70883249|gb|EAN96171.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 792

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 67/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQ----VEDVYDEI 575
            T++ SAT     L   +  + +     T    G     +  +  R Q    ++ +++ I
Sbjct: 522 QTLMFSATFPQRILNLAKRYLRQHYYLLTVGRVGSTTKNITQKIVRVQESEKMDKLFEVI 581

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               Q  L +L+ V TKR AE+L   L    I    +H + +  +R   +RD + G   +
Sbjct: 582 YQQKQTDL-VLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRDFKDGITPI 640

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLD+P    V   D  KE            IGR  R  N            
Sbjct: 641 LVATDVASRGLDVPNVAHVIQYDLPKE-----MDDYTHRIGRTGRAGNKGTATSFYNKNN 695

Query: 696 S 696
            
Sbjct: 696 R 696


>gi|114051321|ref|NP_001039653.1| eukaryotic initiation factor 4A-III [Bos taurus]
 gi|154147644|ref|NP_001093663.1| eukaryotic initiation factor 4A-III [Sus scrofa]
 gi|157821621|ref|NP_001093628.1| eukaryotic initiation factor 4A-III [Rattus norvegicus]
 gi|126308661|ref|XP_001370945.1| PREDICTED: similar to Chain C, Structure Of The Human Exon Junction
           Complex With A Trapped Dead-Box Helicase Bound To Rna
           [Monodelphis domestica]
 gi|109825494|sp|Q2NL22|IF4A3_BOVIN RecName: Full=Eukaryotic initiation factor 4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|123780398|sp|Q3B8Q2|IF4A3_RAT RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|251764755|sp|A6M931|IF4A3_PIG RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|77748037|gb|AAI05876.1| Eukaryotic translation initiation factor 4A, isoform 3 [Rattus
           norvegicus]
 gi|84708898|gb|AAI11185.1| Eukaryotic translation initiation factor 4A, isoform 3 [Bos taurus]
 gi|85792296|gb|ABC84196.1| eukaryotic translation initiation factor 4A isoform 3 [Sus scrofa]
 gi|149054966|gb|EDM06783.1| rCG33565, isoform CRA_a [Rattus norvegicus]
 gi|296476097|gb|DAA18212.1| eukaryotic initiation factor 4A-III [Bos taurus]
          Length = 411

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 211 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 270

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 271 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 325

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 326 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 380

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 381 VKNDDIRILRDIEQ 394


>gi|311071129|ref|YP_003976052.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
 gi|310871646|gb|ADP35121.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
          Length = 497

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 76/202 (37%), Gaps = 21/202 (10%)

Query: 523 PTTIVVSAT-PGSW---------ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
             T++ SAT P              E  +    E  +         V  R     +  + 
Sbjct: 177 HQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLL 236

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D      Q     ++   TKR  ++L+E L  R      +H ++   +R+  +R  + G 
Sbjct: 237 D-----IQSPELAIVFGRTKRRVDELSEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGA 291

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            +VLV  ++   GLDI     V   D       +   S +  IGR  R   +   + +  
Sbjct: 292 IEVLVATDVAARGLDISGVTHVYNFDV-----PQDPESYVHRIGRTGRAGKTGMAMTFIT 346

Query: 692 TITKSIQLAIDETTRRREKQLE 713
              K +  AI++TT+R+  +++
Sbjct: 347 PREKDMLRAIEQTTKRKMDRMK 368


>gi|260790063|ref|XP_002590063.1| hypothetical protein BRAFLDRAFT_123431 [Branchiostoma floridae]
 gi|229275251|gb|EEN46074.1| hypothetical protein BRAFLDRAFT_123431 [Branchiostoma floridae]
          Length = 403

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 80/194 (41%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 203 ATQVVLLSATLPHEILEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 262

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 263 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRS 317

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   G+D+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 318 GASRVLITTDVWARGIDVPQVSLIINYD-----LPNNRELYIHRIGRSGRFGRKGVAINF 372

Query: 690 ADTITKSIQLAIDE 703
             +    I   I++
Sbjct: 373 VKSDDIRILRDIEQ 386


>gi|149065925|gb|EDM15798.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_b [Rattus
           norvegicus]
          Length = 523

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 207 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 266

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 267 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 320

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 321 QA------RELIKVLEEANQAINPK 339


>gi|147902730|ref|NP_001084200.1| eukaryotic initiation factor 4A-III-B [Xenopus laevis]
 gi|82189798|sp|O42226|I4A3B_XENLA RecName: Full=Eukaryotic initiation factor 4A-III-B;
           Short=XeIF-4AIII; Short=eIF-4A-III-B; Short=eIF4A-III-B;
           AltName: Full=ATP-dependent RNA helicase DDX48-B;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3-B;
           AltName: Full=DEAD box protein 48-B; AltName:
           Full=Eukaryotic translation initiation factor 4A isoform
           3-B
 gi|2443810|gb|AAB71410.1| eukaryotic translation initiation factor XeIF-4AIII [Xenopus
           laevis]
          Length = 414

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
                ++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 214 ATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 273

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 274 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 328

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 329 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 383

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 384 VKNDDIRILRDIEQ 397


>gi|291389880|ref|XP_002711450.1| PREDICTED: DEAD box polypeptide 17 [Oryctolagus cuniculus]
          Length = 835

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 519 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 578

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  S    +  IGR AR+ N        T   +++
Sbjct: 579 TDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLK 632

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A      R   ++       INP+
Sbjct: 633 QA------RELIKVLEEANQAINPK 651


>gi|58040739|ref|YP_192703.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58003153|gb|AAW62047.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 393

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 9/183 (4%)

Query: 518 WNCLRPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           +    P T+  SAT   P     ++     V   I         +  R+   + +D  + 
Sbjct: 192 FPDQPPQTVFCSATLPEPVMDLAKRVTRNPVRVEIAAESFTPKNIRQRAIFVEKDDKPET 251

Query: 575 INLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +    +    R ++   TK   + L + L   N+RV  +H +     R + +   R G+ 
Sbjct: 252 VARLLKHFEGRSIVFARTKNTVDALAKTLRRHNLRVETLHGDRTQGARNKALDLFRQGRI 311

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VLV  ++   GLDIP+  LV  +D        +  + +  IGR AR     V      I
Sbjct: 312 PVLVTTDIASRGLDIPDVDLVINMD-----MPETPEAYVHRIGRTARAGRKGVAFSLINI 366

Query: 694 TKS 696
            + 
Sbjct: 367 DER 369


>gi|196012648|ref|XP_002116186.1| conserved hypothetical protein [Trichoplax adhaerens]
 gi|190581141|gb|EDV21219.1| conserved hypothetical protein [Trichoplax adhaerens]
          Length = 220

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 85/200 (42%), Gaps = 18/200 (9%)

Query: 515 FEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSA 564
           ++ +  L P    +++SAT     +E     + + I        +   G+    V +   
Sbjct: 11  YDIFQQLPPDIQVVLLSATIPDDVMEVTTKFMRDPIKILVQKEELTLEGIKQFYVAVELE 70

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D          + ++ V T+R  E LT+ L+ER+  V  MH ++   ER  I
Sbjct: 71  EWKLETLCDLYETLTIT--QAVIFVNTRRKVEWLTQRLHERDFTVSAMHGDMDQKERDVI 128

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D        ++ + I  IGR+ R    
Sbjct: 129 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----IPTNRENYIHRIGRSGRFGRK 183

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +       +   I++
Sbjct: 184 GVAINFLTNDDVRLLKDIEQ 203


>gi|145299438|ref|YP_001142279.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852210|gb|ABO90531.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 613

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 9/161 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +L+ V TK  AE+L   L  R      +H ++    R   +  LR G+ D+L+  +++
Sbjct: 248 EAVLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVV 307

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           S +  IGR  R       IL+     + +  AI
Sbjct: 308 ARGLDVERITHVVNYD-----IPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAI 362

Query: 702 DETTRRREKQLEHNKKHNINP---QSVKEKIMEVIDPILLE 739
           +  TR+  + ++     +IN       KE+I E +    LE
Sbjct: 363 EHATRQAIEPMKMPSTEDINQHRMTKFKERIRETMMGEELE 403


>gi|228950768|ref|ZP_04112897.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229067991|ref|ZP_04201304.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
 gi|229077588|ref|ZP_04210230.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
 gi|229176827|ref|ZP_04304229.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
 gi|228606719|gb|EEK64138.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
 gi|228705727|gb|EEL58071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
 gi|228715129|gb|EEL66992.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
 gi|228808908|gb|EEM55398.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 525

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  +++    ++      + + EK+   I+   L         +  +  
Sbjct: 351 QLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|206972279|ref|ZP_03233226.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|218235804|ref|YP_002365074.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
 gi|228919172|ref|ZP_04082546.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|229148635|ref|ZP_04276889.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
 gi|206732853|gb|EDZ50028.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|218163761|gb|ACK63753.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
 gi|228634893|gb|EEK91468.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
 gi|228840483|gb|EEM85750.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 533

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  +++    ++      + + EK+   I+   L         +  +  
Sbjct: 351 QLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|67528815|ref|XP_662070.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4]
 gi|40741041|gb|EAA60231.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4]
          Length = 1526

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 13/172 (7%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   +      L+    + V ++   +  +   VE      +   + D ++
Sbjct: 382 QTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILH 441

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                GL  L+ V TKRMA+ L+E+L  +      +H +    ER   +   R G++ +L
Sbjct: 442 THGTTGL-TLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPIL 500

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V   +   GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 501 VATAVAARGLDIPNVTHVINYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 547


>gi|297792439|ref|XP_002864104.1| hypothetical protein ARALYDRAFT_918160 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297309939|gb|EFH40363.1| hypothetical protein ARALYDRAFT_918160 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 587

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 84/236 (35%), Gaps = 23/236 (9%)

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542
           +             L + GF      D+    F+ +   R  T++ SAT  +      + 
Sbjct: 296 LDACRYLTLDEADRLVDLGFE-----DDIREVFDHFKSQR-QTLLFSATMPTKIQIFARS 349

Query: 543 IIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
            +V+ +    G      +D   E+   + Q   +   +    +    +L+    K   +D
Sbjct: 350 ALVKPVTVNVGRAGAANLDVIQEVEYVK-QEAKIVYLLECLQKTSPPVLIFCENKADVDD 408

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           + EYL  + +    +H      +R   I   + GK DVLV  ++  +GLD P+   V   
Sbjct: 409 IHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 468

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS------IQLAIDETTRR 707
           D   E       + +  IGR  R   + +        +S      ++  + E  +R
Sbjct: 469 DMPAE-----IENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQR 519


>gi|195475588|ref|XP_002090066.1| GE20836 [Drosophila yakuba]
 gi|194176167|gb|EDW89778.1| GE20836 [Drosophila yakuba]
          Length = 1464

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 86/256 (33%), Gaps = 36/256 (14%)

Query: 457  PPPTLFEYIPEDSLLFVDESHVTIPQISGM-YRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
             P  L +++    + F D   V + +   M   G          +          RP   
Sbjct: 1178 TPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSESMRKFMNH-------QTMRPE-- 1228

Query: 516  EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSART 566
                     T++ SAT    E+++  G  ++  +  T          +     E+     
Sbjct: 1229 -------HQTLMFSAT-FPEEIQRLAGEFLKSYVFVTIGVVGGACSDVQQTIYEVNKFAK 1280

Query: 567  QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            + +     + +  +Q    ++ V TKR A+ L  +L E       +H +    +R + +R
Sbjct: 1281 RSK----LMEILREQADGTIVFVETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALR 1336

Query: 627  DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
            D + G   V++  ++   GLDI     V   D        +    +  IGR  R  N+  
Sbjct: 1337 DFKNGSMKVIIATSVAARGLDIKNIKHVVNFD-----MPNNIDDYVHRIGRTGRVGNNGR 1391

Query: 687  ILYADTITKSIQLAID 702
                    +   LA D
Sbjct: 1392 ATSFFDPDQDQALAGD 1407


>gi|251764758|sp|B7ZTW1|IF4A3_XENTR RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|213624377|gb|AAI71014.1| hypothetical protein LOC100135173 [Xenopus (Silurana) tropicalis]
          Length = 415

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
                ++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 215 ATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 274

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 275 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 329

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 330 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 384

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 385 VKNDDIRILRDIEQ 398


>gi|166157858|ref|NP_001107349.1| eukaryotic initiation factor 4A-III [Xenopus (Silurana) tropicalis]
 gi|163916017|gb|AAI57178.1| LOC100135173 protein [Xenopus (Silurana) tropicalis]
          Length = 415

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
                ++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 215 ATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 274

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 275 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 329

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 330 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 384

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 385 VKNDDIRILRDIEQ 398


>gi|229083524|ref|ZP_04215862.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
 gi|228699778|gb|EEL52425.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
          Length = 527

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 100/257 (38%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  ++     ++      + + EK+   I+   L         +  +  
Sbjct: 351 QLKNIERTTKRKMDRMNAPTLDEALEGQQRLIAEKLQSTIESDNLSYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|73964736|ref|XP_533130.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 48
           isoform 1 [Canis familiaris]
          Length = 411

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 211 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 270

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 271 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 325

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 326 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 380

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 381 VKNDDIRILRDIEQ 394


>gi|66807079|ref|XP_637262.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
 gi|74996736|sp|Q54KG1|DDX41_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx41; AltName:
           Full=DEAD box protein 41
 gi|60465669|gb|EAL63748.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
          Length = 671

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 77/208 (37%), Gaps = 21/208 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      D+     + +   R  T++ SAT      E  +  +V  +    G  
Sbjct: 390 RLIDLGFE-----DDIRSVLDNFTNQR-QTLLFSATMPKKIQEFARSALVLPVEVNVGRA 443

Query: 555 ------VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
                 V   VE      ++  + + +         +L+    K+  +D+ EYL  + + 
Sbjct: 444 GAANLNVTQEVEFVKPEAKIVYLLECLQKTPPP---VLIFCENKKDVDDIYEYLLLKQVE 500

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H +    ER   I+  R GK DVLV  ++  +GLD PE   V   D  +E      
Sbjct: 501 AVSIHGDKSQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPRE-----I 555

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKS 696
            + I  IGR  R  N  V         +
Sbjct: 556 ENYIHRIGRTGRRGNKGVATTFINKNNT 583


>gi|229028084|ref|ZP_04184235.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
 gi|228733237|gb|EEL84068.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
          Length = 527

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 100/257 (38%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  ++E    ++      + + EK+   I    L         +  +  
Sbjct: 351 QLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNENLSYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|229159401|ref|ZP_04287421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
 gi|228624068|gb|EEK80874.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
          Length = 528

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  ++E    ++      + + EK+   I+   L         +  +  
Sbjct: 351 QLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|195343855|ref|XP_002038506.1| GM10578 [Drosophila sechellia]
 gi|194133527|gb|EDW55043.1| GM10578 [Drosophila sechellia]
          Length = 724

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 13/164 (7%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++                 +++ +  +I   ++   +I++ V TKR  +
Sbjct: 496 LELSANHNIRQVVDVCDEFSKE-------EKLKTLLSDIYDTSESPGKIIIFVETKRRVD 548

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L  ++    +R   +H +    ER  ++R+ R GK ++LV  ++   GLD+     V  
Sbjct: 549 NLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVIN 608

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            D     + ++    I  IGR  R+ N+K   +A     + + A
Sbjct: 609 FD-----YPQNSEDYIHRIGRTGRS-NTKGTSFAFFTKNNAKQA 646


>gi|52144993|ref|YP_081836.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
 gi|81689748|sp|Q63GX5|CSHA_BACCZ RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|51978462|gb|AAU20012.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
          Length = 528

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  +++    ++      + + EK+   I+   L         +  +  
Sbjct: 351 QLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|30260423|ref|NP_842800.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47525504|ref|YP_016853.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47567484|ref|ZP_00238196.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49183266|ref|YP_026518.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|49479130|ref|YP_034574.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|65317675|ref|ZP_00390634.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|118475995|ref|YP_893146.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|165871548|ref|ZP_02216194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167634144|ref|ZP_02392466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167640350|ref|ZP_02398615.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170687759|ref|ZP_02878974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|170707898|ref|ZP_02898348.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177653423|ref|ZP_02935633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190567376|ref|ZP_03020290.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|196035956|ref|ZP_03103357.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196041156|ref|ZP_03108452.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|196046212|ref|ZP_03113439.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|218901440|ref|YP_002449274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225862289|ref|YP_002747667.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227812915|ref|YP_002812924.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228912978|ref|ZP_04076622.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228925493|ref|ZP_04088587.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931740|ref|ZP_04094641.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228983493|ref|ZP_04143703.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229089370|ref|ZP_04220646.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
 gi|229119903|ref|ZP_04249162.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
 gi|229154007|ref|ZP_04282136.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           4342]
 gi|229182634|ref|ZP_04309880.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
 gi|229604746|ref|YP_002864874.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254686589|ref|ZP_05150448.1| DEAD/DEAH box helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254723571|ref|ZP_05185358.1| DEAD/DEAH box helicase [Bacillus anthracis str. A1055]
 gi|254734933|ref|ZP_05192645.1| DEAD/DEAH box helicase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254739718|ref|ZP_05197411.1| DEAD/DEAH box helicase [Bacillus anthracis str. Kruger B]
 gi|254754911|ref|ZP_05206946.1| DEAD/DEAH box helicase [Bacillus anthracis str. Vollum]
 gi|301051970|ref|YP_003790181.1| DEAD/DEAH box helicase [Bacillus anthracis CI]
 gi|81696998|sp|Q6HPE6|CSHA_BACHK RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|81715465|sp|Q81VG0|CSHA_BACAN RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|134039177|sp|A0R8U6|CSHA_BACAH RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|30253744|gb|AAP24286.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47500652|gb|AAT29328.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|47555886|gb|EAL14225.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49177193|gb|AAT52569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|49330686|gb|AAT61332.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|118415220|gb|ABK83639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|164712652|gb|EDR18183.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167511752|gb|EDR87133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167530458|gb|EDR93173.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170127256|gb|EDS96133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|170668286|gb|EDT19034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|172081463|gb|EDT66536.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190561503|gb|EDV15474.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|195991325|gb|EDX55292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196022957|gb|EDX61637.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|196028091|gb|EDX66702.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|218539043|gb|ACK91441.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225790192|gb|ACO30409.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227005398|gb|ACP15141.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228600842|gb|EEK58416.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
 gi|228629528|gb|EEK86226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           4342]
 gi|228663560|gb|EEL19141.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
 gi|228693970|gb|EEL47657.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
 gi|228776237|gb|EEM24593.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228827920|gb|EEM73653.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228834238|gb|EEM79781.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228846673|gb|EEM91681.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229269154|gb|ACQ50791.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|300374139|gb|ADK03043.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI]
          Length = 528

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  +++    ++      + + EK+   I+   L         +  +  
Sbjct: 351 QLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|307326471|ref|ZP_07605666.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306887879|gb|EFN18870.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 559

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 6/130 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +     ++   T+   + LTE L  R  R   +H  +   +R  ++  +R G  D+LV 
Sbjct: 250 VESPEATIVFCRTRDQVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRVRGGTADLLVA 309

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   GLDI +   V   D        +  S +  IGR  R     V I  A+     +
Sbjct: 310 TDVAARGLDIEQLTHVVNYDV-----PSAPESYVHRIGRVGRAGREGVAITLAEPREHRM 364

Query: 698 QLAIDETTRR 707
             AI+ TTRR
Sbjct: 365 LKAIERTTRR 374


>gi|225717006|gb|ACO14349.1| Eukaryotic initiation factor 4A-III [Esox lucius]
          Length = 406

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
                ++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 206 ATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 265

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 266 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 320

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 321 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 375

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 376 VKNDDIRILRDIEQ 389


>gi|47028621|gb|AAT09162.1| DEAD box protein AxVH [Ambystoma mexicanum]
          Length = 724

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 71/185 (38%), Gaps = 30/185 (16%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ-- 580
            T++ SAT P   E  Q    +  + ++P  L    V +        DV  +I    Q  
Sbjct: 481 QTLMFSATFP---ENIQS---LAREFLKPDYLF---VTVGQVGGACADVQQKILEVDQYE 531

Query: 581 ------------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
                          R ++ V TK+MA+ LT  L + NI    +H +    ER E + D 
Sbjct: 532 KKDKLVEILQGLGKERTMVFVGTKKMADYLTTLLCQENISATSIHGDRLQREREEALADF 591

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVI 687
           R GK  VLV  N+   GLDI     V   D        +    +  IGR  R  N  K I
Sbjct: 592 RFGKCHVLVATNVAARGLDIENVQHVINYD-----LSDNIEEYVHRIGRTGRCGNVGKAI 646

Query: 688 LYADT 692
            +  +
Sbjct: 647 SFFHS 651


>gi|301772834|ref|XP_002921834.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic initiation factor
           4A-III-like [Ailuropoda melanoleuca]
          Length = 417

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 217 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 276

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 277 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 331

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 332 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 386

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 387 VKNDDIRILRDIEQ 400


>gi|254226977|ref|ZP_04920540.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51]
 gi|125620490|gb|EAZ48861.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51]
          Length = 576

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 262 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 321

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 322 TDVVARGLDVPRITHVYNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 376

Query: 698 QLAIDETTR 706
              I+  TR
Sbjct: 377 LRTIERVTR 385


>gi|89099486|ref|ZP_01172362.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
 gi|89085872|gb|EAR64997.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
          Length = 479

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 96/261 (36%), Gaps = 38/261 (14%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT P   +    + +   QIIR     +  P +E      Q    +D +     
Sbjct: 158 QTLLFSATMPAPIQRMAERFMRDPQIIRVKAKEMTVPLIEQFYVEVQERTKFDVLTRLLN 217

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L E L  R      +H ++   +R+ ++R  + G  DVLV 
Sbjct: 218 IQSPELAIIFGRTKRRVDELAEALNLRGFLAEGIHGDLSQAKRMSVLRKFKEGSIDVLVA 277

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI     V   D       +   S +  IGR  R     + +   T  +   
Sbjct: 278 TDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKEGMAMTFITPREKSY 332

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED-AATTNISIDAQQLSLSK 757
           LA+ E                   ++ K K+ +++ P L E        ++D    ++S 
Sbjct: 333 LAVVE-------------------RTTKSKMGKMVPPTLAEALEGQQKAAVDKISQAISA 373

Query: 758 KKGKAHLKSLRKQMHLAADNL 778
              + +          AAD L
Sbjct: 374 NNLENY--------KEAADEL 386


>gi|114794629|pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
           Trapped Dead-Box Helicase Bound To Rna
 gi|114794633|pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
           Trapped Dead-Box Helicase Bound To Rna
 gi|217035449|pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
 gi|217035453|pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
          Length = 413

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 211 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 270

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 271 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 325

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 326 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 380

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 381 VKNDDIRILRDIEQ 394


>gi|308474530|ref|XP_003099486.1| CRE-CGH-1 protein [Caenorhabditis remanei]
 gi|308266675|gb|EFP10628.1| CRE-CGH-1 protein [Caenorhabditis remanei]
          Length = 429

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 83/241 (34%), Gaps = 35/241 (14%)

Query: 518 WNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           +       ++ SAT                +E+   + + +  + +    V    ++   
Sbjct: 211 FLPKERQIMLYSATFPQTVTSFMQKHMHKPYEINLMEELTLLGVTQYYAFVQEKQKVH-- 268

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
                           Q  + ++   + +  E L + + E      Y+HS++    R  +
Sbjct: 269 -------CLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRV 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
             D R G    LV  +LL  G+DI    +V   D     F R+  + +  IGR+ R  + 
Sbjct: 322 FHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFD-----FPRNAETYLHRIGRSGRFGHL 376

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
            V +   T           T RR E++L    +    P++V  K+      ++     TT
Sbjct: 377 GVAINLITYEDR------HTLRRIEQELRTRIE--PIPKTVDPKLYVADQQLVDASEETT 428

Query: 745 N 745
            
Sbjct: 429 A 429


>gi|306835508|ref|ZP_07468523.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
           49726]
 gi|304568617|gb|EFM44167.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
           49726]
          Length = 446

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 78/202 (38%), Gaps = 21/202 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTG 553
            + + GF LPS         E  +     T++ SAT PG+  L   +  + + + IR   
Sbjct: 168 EMLDLGF-LPS----IEAILEALDGNAHQTMLFSATMPGA-ILNLSRQFMNKPVHIRAES 221

Query: 554 LVDPPV--EIRSARTQVEDV-----YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
             D       R    Q   +        I  A  +G R ++   TKR A  L + L ER 
Sbjct: 222 EADEVTHETTRKVTFQAHRMDKVPVIAHILQAQGRG-RSIIFTRTKRSAAQLADDLAERG 280

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
             V  +H ++    R + ++  R G+ D+LV  ++   G+D+ +   V            
Sbjct: 281 FHVGAVHGDLGQKSREKSLQAFRSGEVDILVATDIAARGIDVDDVTHVINYQV-----PD 335

Query: 667 SKTSLIQTIGRAARNVNSKVIL 688
              + I  IGR  R  ++   +
Sbjct: 336 DPMTFIHRIGRTGRAGHTGTAV 357


>gi|187927918|ref|YP_001898405.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12J]
 gi|309781089|ref|ZP_07675827.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
 gi|187724808|gb|ACD25973.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
 gi|308920155|gb|EFP65814.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
          Length = 627

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 9/146 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR A+ L E L E       +H ++    R   +  LR G+  VLV  ++  
Sbjct: 298 QAIVFTATKRDADSLAERLTEHGFSAGALHGDMHQGARNRTLTALRRGQLRVLVATDVAA 357

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAID 702
            G+D+P+   V   D  K+         +  IGR  R   S + +       + Q   I+
Sbjct: 358 RGIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGIAINLVNHNDTFQWRRIE 412

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEK 728
               RR   ++ +    + P+   + 
Sbjct: 413 RFVDRR---IDASVVEGLEPKRSAKP 435


>gi|84385216|ref|ZP_00988248.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
 gi|84379813|gb|EAP96664.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
          Length = 673

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 82/210 (39%), Gaps = 28/210 (13%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTRRREKQLEHNKKHNIN-PQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
              I+  T   + Q+E      I  PQ          D +     A     ++ ++ S +
Sbjct: 357 LRTIERVT---KSQME-----EIQLPQR---------DEVAAARVAKLGAELETEKESKA 399

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
            +     + +L++ + + A  L    AA +
Sbjct: 400 LENFAGLISTLQESLEVDAATL----AAML 425


>gi|312372785|gb|EFR20671.1| hypothetical protein AND_19720 [Anopheles darlingi]
          Length = 1061

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 91/253 (35%), Gaps = 40/253 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS---CMDNRPL 513
            P  L +++        D   V+  ++  +   +  R     + GF LP+    M N  +
Sbjct: 248 TPGRLLDFM--------DRGVVSFEKVKYVVLDEADRM---LDMGF-LPAIEKVMGNATM 295

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD----------PPVEIRS 563
             ++    +  T++ SAT      +     +   I    G+V             VE   
Sbjct: 296 PSKD----QRQTLMFSATFAPDIQQLAGVFLNNYIYVAVGIVGGACGDVEQVVYEVEKFK 351

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
            R ++E++  E N         L+ V TKR A+ L   + E       +H +    ER  
Sbjct: 352 KRKKLEELLGEGNARG-----TLVFVETKRSADYLASLMSETKFPTTSIHGDRLQREREM 406

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            ++D + G+ DVL+  ++   GLDI     V   D  K     +    +  IGR  R  N
Sbjct: 407 ALKDFKEGRMDVLIATSVAARGLDIKNVSHVVNYDLPK-----NIDDYVHRIGRTGRVGN 461

Query: 684 SK-VILYADTITK 695
                 + D    
Sbjct: 462 KGRATSFYDPTAD 474


>gi|323352003|gb|EGA84542.1| Dbp1p [Saccharomyces cerevisiae VL3]
          Length = 551

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 21/191 (10%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQVEDV-----YD 573
            T++ SAT P    ++      ++  I  +    G     +  R     V+D+       
Sbjct: 282 QTLMFSATFPVD--IQHLARDFLDNYIFLSVGRVGSTSENITQRIL--YVDDMDKKSXLL 337

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +GL  L+ V TKRMA+ LT++L  +N +   +H +    ER   +   +    
Sbjct: 338 DLLSAEHKGL-TLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 396

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADT 692
           D+LV   +   GLDIP    V   D             +  IGR  R  N+ V   + ++
Sbjct: 397 DILVATAVAARGLDIPNVTHVINYD-----LPSDIDDYVHRIGRTGRAGNTGVATSFFNS 451

Query: 693 ITKSIQLAIDE 703
             ++I   + E
Sbjct: 452 NNQNIVKGLME 462


>gi|323335026|gb|EGA76316.1| Dbp1p [Saccharomyces cerevisiae Vin13]
          Length = 617

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 21/191 (10%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQVEDV-----YD 573
            T++ SAT P    ++      ++  I  +    G     +  R     V+D+       
Sbjct: 348 QTLMFSATFPVD--IQHLARDFLDNYIFLSVGRVGSTSENITQRIL--YVDDMDKKSALL 403

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +GL  L+ V TKRMA+ LT++L  +N +   +H +    ER   +   +    
Sbjct: 404 DLLSAEHKGL-TLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 462

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADT 692
           D+LV   +   GLDIP    V   D             +  IGR  R  N+ V   + ++
Sbjct: 463 DILVATAVAARGLDIPNVTHVINYD-----LPSDIDDYVHRIGRTGRAGNTGVATSFFNS 517

Query: 693 ITKSIQLAIDE 703
             ++I   + E
Sbjct: 518 NNQNIVKGLME 528


>gi|323306983|gb|EGA60267.1| Dbp1p [Saccharomyces cerevisiae FostersO]
          Length = 452

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 21/191 (10%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQVEDV-----YD 573
            T++ SAT P    ++      ++  I  +    G     +  R     V+D+       
Sbjct: 183 QTLMFSATFPVD--IQHLARDFLDNYIFLSVGRVGSTSENITQRIL--YVDDMDKKSALL 238

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +GL  L+ V TKRMA+ LT++L  +N +   +H +    ER   +   +    
Sbjct: 239 DLLSAEHKGL-TLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 297

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADT 692
           D+LV   +   GLDIP    V   D             +  IGR  R  N+ V   + ++
Sbjct: 298 DILVATAVAARGLDIPNVTHVINYD-----LPSDIDDYVHRIGRTGRAGNTGVATSFFNS 352

Query: 693 ITKSIQLAIDE 703
             ++I   + E
Sbjct: 353 NNQNIVKGLME 363


>gi|323302724|gb|EGA56530.1| Dbp1p [Saccharomyces cerevisiae FostersB]
          Length = 617

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 21/191 (10%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQVEDV-----YD 573
            T++ SAT P    ++      ++  I  +    G     +  R     V+D+       
Sbjct: 348 QTLMFSATFPVD--IQHLARDFLDNYIFLSVGRVGSTSENITQRIL--YVDDMDKKSALL 403

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +GL  L+ V TKRMA+ LT++L  +N +   +H +    ER   +   +    
Sbjct: 404 DLLSAEHKGL-TLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 462

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADT 692
           D+LV   +   GLDIP    V   D             +  IGR  R  N+ V   + ++
Sbjct: 463 DILVATAVAARGLDIPNVTHVINYD-----LPSDIDDYVHRIGRTGRAGNTGVATSFFNS 517

Query: 693 ITKSIQLAIDE 703
             ++I   + E
Sbjct: 518 NNQNIVKGLME 528


>gi|297746441|emb|CBI16497.3| unnamed protein product [Vitis vinifera]
          Length = 268

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 11/163 (6%)

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG-----LRILLTVLTKRMAEDLTEY 601
           ++   T L+   VE      +   + D ++     G        L+ V TK+ A+ L  +
Sbjct: 29  RVGSSTDLIVQRVEFVHDTDKRSHLMDLLHAQRANGVHGKQYLTLVFVETKKGADSLEHW 88

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L         +H +    ER + +R  + G   +LV  ++   GLDIP    V   D   
Sbjct: 89  LCMNGFPATTIHGDRTQQEREQALRSFKSGVTPILVATDVAARGLDIPHVAHVVNFD--- 145

Query: 662 EGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
                     +  IGR  R   +     + +    S+  A+ E
Sbjct: 146 --LPNDIDDYVHRIGRTGRAGKTGLATAFFNDNNSSLAKALSE 186


>gi|207340598|gb|EDZ68898.1| YPL119Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 303

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 21/191 (10%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQVEDV-----YD 573
            T++ SAT P    ++      ++  I  +    G     +  R     V+D+       
Sbjct: 34  QTLMFSATFPVD--IQHLARDFLDNYIFLSVGRVGSTSENITQRIL--YVDDMDKKSALL 89

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +GL  L+ V TKRMA+ LT++L  +N +   +H +    ER   +   +    
Sbjct: 90  DLLSAEHKGL-TLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 148

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADT 692
           D+LV   +   GLDIP    V   D             +  IGR  R  N+ V   + ++
Sbjct: 149 DILVATAVAARGLDIPNVTHVINYD-----LPSDIDDYVHRIGRTGRAGNTGVATSFFNS 203

Query: 693 ITKSIQLAIDE 703
             ++I   + E
Sbjct: 204 NNQNIVKGLME 214


>gi|190407839|gb|EDV11104.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
          Length = 617

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 21/191 (10%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQVEDV-----YD 573
            T++ SAT P    ++      ++  I  +    G     +  R     V+D+       
Sbjct: 348 QTLMFSATFPVD--IQHLARDFLDNYIFLSVGRVGSTSENITQRIL--YVDDMDKKSALL 403

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +GL  L+ V TKRMA+ LT++L  +N +   +H +    ER   +   +    
Sbjct: 404 DLLSAEHKGL-TLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 462

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADT 692
           D+LV   +   GLDIP    V   D             +  IGR  R  N+ V   + ++
Sbjct: 463 DILVATAVAARGLDIPNVTHVINYD-----LPSDIDDYVHRIGRTGRAGNTGVATSFFNS 517

Query: 693 ITKSIQLAIDE 703
             ++I   + E
Sbjct: 518 NNQNIVKGLME 528


>gi|160380607|sp|A6ZWD3|DBP1_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP1; AltName: Full=DEAD
           box protein 1; AltName: Full=Helicase CA1
 gi|151942679|gb|EDN61025.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
          Length = 617

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 21/191 (10%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQVEDV-----YD 573
            T++ SAT P    ++      ++  I  +    G     +  R     V+D+       
Sbjct: 348 QTLMFSATFPVD--IQHLARDFLDNYIFLSVGRVGSTSENITQRIL--YVDDMDKKSALL 403

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +GL  L+ V TKRMA+ LT++L  +N +   +H +    ER   +   +    
Sbjct: 404 DLLSAEHKGL-TLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 462

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADT 692
           D+LV   +   GLDIP    V   D             +  IGR  R  N+ V   + ++
Sbjct: 463 DILVATAVAARGLDIPNVTHVINYD-----LPSDIDDYVHRIGRTGRAGNTGVATSFFNS 517

Query: 693 ITKSIQLAIDE 703
             ++I   + E
Sbjct: 518 NNQNIVKGLME 528


>gi|148643558|ref|YP_001274071.1| helicase [Methanobrevibacter smithii ATCC 35061]
 gi|222444945|ref|ZP_03607460.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350482|ref|ZP_05975899.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM
           2374]
 gi|148552575|gb|ABQ87703.1| helicase [Methanobrevibacter smithii ATCC 35061]
 gi|222434510|gb|EEE41675.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861264|gb|EFC93562.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM
           2374]
          Length = 429

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 92/258 (35%), Gaps = 18/258 (6%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            +  T++ SAT    E+++      ++     +  + +  P +      T+ +D  + + 
Sbjct: 177 KQRQTLLFSAT-MPKEIKRITKFYQKKPKHLKVAQSQMTVPEITQYYFETKEKDKLENLT 235

Query: 577 LAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                      L+   TK+  + + + L  R      +H ++    R +++   R G  +
Sbjct: 236 RLIDVYDVNLGLVFCNTKKRVDWVAKNLRNRGYAAEGIHGDMNQKSRDKVMNKFRNGNIE 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +L+  ++   G+D+P   +V   D       ++    +  IGR  R  N      +    
Sbjct: 296 ILIATDVAARGIDVPNVEVVVNYDV-----PQNPEYYVHRIGRTGRAGNMGYAFTFVAGK 350

Query: 694 TKSIQLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAAT-TNISID 749
                  I + T+ + KQ +   + +  +I    +   +   I+   LE        +++
Sbjct: 351 EIYSLRTIKKVTKSKIKQRKIPSYKEMESIKNTQLMNSVKNSIEKDNLEKYVKLVEGAME 410

Query: 750 AQQLSLS-KKKGKAHLKS 766
               S+         +K 
Sbjct: 411 EDFDSVDIAAALLKMVKE 428


>gi|3641|emb|CAA39465.1| DBP1 [Saccharomyces cerevisiae]
          Length = 618

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 21/191 (10%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQVEDV-----YD 573
            T++ SAT P    ++      ++  I  +    G     +  R     V+D+       
Sbjct: 349 QTLMFSATFPVD--IQHLARDFLDNYIFLSVGRVGSTSENITQRIL--YVDDMDKKSALL 404

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +GL  L+ V TKRMA+ LT++L  +N +   +H +    ER   +   +    
Sbjct: 405 DLLSAEHKGL-TLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 463

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADT 692
           D+LV   +   GLDIP    V   D             +  IGR  R  N+ V   + ++
Sbjct: 464 DILVATAVAARGLDIPNVTHVINYD-----LPSDIDDYVHRIGRTGRAGNTGVATSFFNS 518

Query: 693 ITKSIQLAIDE 703
             ++I   + E
Sbjct: 519 NNQNIVKGLME 529


>gi|6325138|ref|NP_015206.1| Dbp1p [Saccharomyces cerevisiae S288c]
 gi|1706311|sp|P24784|DBP1_YEAST RecName: Full=ATP-dependent RNA helicase DBP1; AltName: Full=DEAD
           box protein 1; AltName: Full=Helicase CA1
 gi|1163095|gb|AAB68243.1| Dbp1p: putative ATP-dependent DEAD box RNA helicase [Saccharomyces
           cerevisiae]
 gi|256274187|gb|EEU09095.1| Dbp1p [Saccharomyces cerevisiae JAY291]
 gi|259150039|emb|CAY86842.1| Dbp1p [Saccharomyces cerevisiae EC1118]
 gi|285815423|tpg|DAA11315.1| TPA: Dbp1p [Saccharomyces cerevisiae S288c]
 gi|323346178|gb|EGA80468.1| Dbp1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 617

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 21/191 (10%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQVEDV-----YD 573
            T++ SAT P    ++      ++  I  +    G     +  R     V+D+       
Sbjct: 348 QTLMFSATFPVD--IQHLARDFLDNYIFLSVGRVGSTSENITQRIL--YVDDMDKKSALL 403

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +GL  L+ V TKRMA+ LT++L  +N +   +H +    ER   +   +    
Sbjct: 404 DLLSAEHKGL-TLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 462

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADT 692
           D+LV   +   GLDIP    V   D             +  IGR  R  N+ V   + ++
Sbjct: 463 DILVATAVAARGLDIPNVTHVINYD-----LPSDIDDYVHRIGRTGRAGNTGVATSFFNS 517

Query: 693 ITKSIQLAIDE 703
             ++I   + E
Sbjct: 518 NNQNIVKGLME 528


>gi|213511116|ref|NP_001134430.1| eukaryotic initiation factor 4A-III [Salmo salar]
 gi|251764756|sp|B5DG42|IF4A3_SALSA RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|197631985|gb|ACH70716.1| eukaryotic translation initiation factor 4A isoform 3 [Salmo salar]
 gi|209733202|gb|ACI67470.1| Eukaryotic initiation factor 4A-III [Salmo salar]
          Length = 406

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
                ++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 206 ATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 265

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 266 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 320

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 321 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 375

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 376 VKNDDIRILRDIEQ 389


>gi|325116173|emb|CBZ51727.1| putative ATP-dependent helicase, putaive [Neospora caninum
           Liverpool]
          Length = 395

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 84/211 (39%), Gaps = 27/211 (12%)

Query: 510 NRPLRFEEWNCLR-----PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVD 556
           NR  + + ++  R        ++VSAT     LE     + +          +   G+  
Sbjct: 178 NRGFKEQVYDIYRYLPPSTQVVLVSATLPHEVLEMTTKFMDDPFRVLVKRDELTLEGIKQ 237

Query: 557 PPVEIRSARTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
             V +   + + +   D+YD + +      + ++   TK   E L + + E N  V  MH
Sbjct: 238 FFVAVEREQWKFDTLTDLYDTLTIT-----QAVIFCNTKAKVEWLAQKMKEANFTVSRMH 292

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            ++   ER EI+R  R G+  VL+  ++   GLD+ +  LV   D        S+   I 
Sbjct: 293 GDMPQQERDEIMRQFRGGQSRVLIATDVWGRGLDVQQVSLVINYD-----LPNSRELYIH 347

Query: 674 TIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
            IGR+ R     V I +       I   I++
Sbjct: 348 RIGRSGRFGRKGVAINFVKNDDIRILRDIEQ 378


>gi|195502160|ref|XP_002098101.1| GE24123 [Drosophila yakuba]
 gi|194184202|gb|EDW97813.1| GE24123 [Drosophila yakuba]
          Length = 719

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 13/164 (7%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++                 +++ +  +I   ++   +I++ V TKR  +
Sbjct: 494 LELSANHNIRQVVDVCDEFSKE-------EKLKTLLSDIYDTSESPGKIIIFVETKRRVD 546

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L  ++    +R   +H +    ER  ++R+ R GK ++LV  ++   GLD+     V  
Sbjct: 547 NLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVIN 606

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            D     + ++    I  IGR  R+ N+K   +A     + + A
Sbjct: 607 FD-----YPQNSEDYIHRIGRTGRS-NTKGTSFAFFTKNNAKQA 644


>gi|241662507|ref|YP_002980867.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240864534|gb|ACS62195.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
          Length = 627

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 9/146 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR A+ L E L E       +H ++    R   +  LR G+  VLV  ++  
Sbjct: 298 QAIVFTATKRDADSLAERLTEHGFSAGALHGDMHQGARNRTLTALRRGQLRVLVATDVAA 357

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAID 702
            G+D+P+   V   D  K+         +  IGR  R   S + +       + Q   I+
Sbjct: 358 RGIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGIAINLVNHNDTFQWRRIE 412

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEK 728
               RR   ++ +    + P+   + 
Sbjct: 413 RFVDRR---IDASVVEGLEPKRSAKP 435


>gi|116668333|pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
           A Resolution
          Length = 374

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 174 ATQVVLISATLPHEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 233

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 234 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 288

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V +  
Sbjct: 289 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAVNF 343

Query: 691 DTITK 695
                
Sbjct: 344 VKNDD 348


>gi|115444241|ref|NP_001045900.1| Os02g0150100 [Oryza sativa Japonica Group]
 gi|113535431|dbj|BAF07814.1| Os02g0150100 [Oryza sativa Japonica Group]
          Length = 460

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 93/262 (35%), Gaps = 32/262 (12%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      D+    F+ +   R  T++ SAT         +  +V+ +I   G  
Sbjct: 182 RLVDLGFE-----DDIREVFDHFKAQR-QTLLFSATMPKKIQNFAKSALVKPVIVNVGRA 235

Query: 555 ----VDPPVEIRSARTQVED--VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
               +D   E+   +   ED  +   +    +    +L+    K   + + EYL  + + 
Sbjct: 236 GAANLDVIQEVEYVK---EDARIIYLLECLQKTPPPVLVFCENKADVDYIHEYLLLKGVE 292

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H      ER   I   + GK DVLV  ++  +GLD P+   V   D   E      
Sbjct: 293 AVAIHGGKDQEERENAIEFFKNGKKDVLVATDVASKGLDFPDIQHVINYDMPAE-----I 347

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            + +  IGR  R   + +        ++    +D       K L    K  I P      
Sbjct: 348 ENYVHRIGRTGRCGKTGIATTFINKNQTETTLLD------LKHLLKEAKQRIPPV----- 396

Query: 729 IMEVIDPILLEDAATTNISIDA 750
           + E+ DP+  E+       +  
Sbjct: 397 LAELNDPLEDEETMAKESGVKG 418


>gi|24644479|ref|NP_524243.2| Rm62, isoform A [Drosophila melanogaster]
 gi|30923187|sp|P19109|DDX17_DROME RecName: Full=ATP-dependent RNA helicase p62
 gi|23175945|gb|AAG22213.2| Rm62, isoform A [Drosophila melanogaster]
 gi|41058179|gb|AAR99134.1| RE11923p [Drosophila melanogaster]
          Length = 719

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 13/164 (7%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++                 +++ +  +I   ++   +I++ V TKR  +
Sbjct: 492 LELSANHNIRQVVDVCDEFSKE-------EKLKTLLSDIYDTSESPGKIIIFVETKRRVD 544

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L  ++    +R   +H +    ER  ++R+ R GK ++LV  ++   GLD+     V  
Sbjct: 545 NLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVIN 604

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            D     + ++    I  IGR  R+ N+K   +A     + + A
Sbjct: 605 FD-----YPQNSEDYIHRIGRTGRS-NTKGTSFAFFTKNNAKQA 642


>gi|229015638|ref|ZP_04172628.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
 gi|229021830|ref|ZP_04178406.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
 gi|228739470|gb|EEL89890.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
 gi|228745658|gb|EEL95670.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
          Length = 530

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  ++E    ++      + + EK+   I+   L         +  +  
Sbjct: 351 QLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|220681312|gb|ACL80032.1| vasa-like protein [Bombyx mori]
          Length = 601

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 90/231 (38%), Gaps = 18/231 (7%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           FV+ + V+   +  +   +  R     + GF +PS      L        +  T++ SAT
Sbjct: 321 FVERNRVSFGSVRFVVLDEADRM---LDMGF-MPSIEKMM-LHPTMVETTKRQTLMFSAT 375

Query: 532 PGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ--GLRI 585
               +++   G  +   +       G     VE         +  + +    ++  G RI
Sbjct: 376 -FPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLIEENDGKRI 434

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ +   L E+ +    +H +    ER E +++ + GK  +LV   +   G
Sbjct: 435 LVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARG 494

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITK 695
           LDI    +V   D  K     S    +  IGR  R  N  K + + D+   
Sbjct: 495 LDIKNVDIVVNYDLPK-----SIDEYVHRIGRTGRVGNRGKAVSFYDSDQD 540


>gi|84387538|ref|ZP_00990556.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
 gi|84377586|gb|EAP94451.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
          Length = 531

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 94/261 (36%), Gaps = 28/261 (10%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   ++++           Q+  +   +  R     + GF      D R  +  
Sbjct: 130 TPGRLLDLYNQNAV--------RFDQLEILVLDEADRM---LDMGFI----RDIR--KIL 172

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDV 571
            +   +   ++ SAT         +G++   VE  + P     P VE  I     + +  
Sbjct: 173 AFLPKKRQNLLFSATFSDDIRGLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKK-KKS 231

Query: 572 YDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                L      R +L+   TK  A  L+ +L E+ I    +H       R + + + + 
Sbjct: 232 AMLAKLIKDNDWRQVLVFSKTKHGANKLSHFLDEQGISAAPIHGNKSQGARTKALENFKT 291

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           GK  VLV  ++   G+DIP+   V   D             I   GRA     +  ++ A
Sbjct: 292 GKVRVLVATDIAARGIDIPQLPQVVNFDLP--NVSEDYVHRIGRTGRAGEVGKAISLVCA 349

Query: 691 DTITK--SIQLAIDETTRRRE 709
           D + +   I+  I +   RRE
Sbjct: 350 DEVGELFGIERLIQQVLERRE 370


>gi|194898941|ref|XP_001979021.1| GG10666 [Drosophila erecta]
 gi|190650724|gb|EDV47979.1| GG10666 [Drosophila erecta]
          Length = 720

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 13/164 (7%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++                 +++ +  +I   ++   +I++ V TKR  +
Sbjct: 492 LELSANHNIRQVVDVCDEFSKE-------EKLKTLLSDIYDTSESPGKIIIFVETKRRVD 544

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L  ++    +R   +H +    ER  ++R+ R GK ++LV  ++   GLD+     V  
Sbjct: 545 NLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVIN 604

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            D     + ++    I  IGR  R+ N+K   +A     + + A
Sbjct: 605 FD-----YPQNSEDYIHRIGRTGRS-NTKGTSFAFFTKNNAKQA 642


>gi|328772988|gb|EGF83025.1| hypothetical protein BATDEDRAFT_29115 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 483

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT           ++ E  Q  +    +  +  +   VEI  +  +   +Y  +
Sbjct: 235 QTLMWSATWPKEVQALARDYQKEFIQVNVGSMELSASHNITQIVEICPSHDKRHRLYKLL 294

Query: 576 NLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                    + ++   TKR A+D+T  L         +H + K  ER  ++++ + GK  
Sbjct: 295 EDIMSNADQKTIIFTGTKRTADDITRDLRHDGFPALAIHGDKKQQERDWVMQEFKSGKTP 354

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+  ++   GLD+ +   V   D     F  +    +  IGR  R  N        +  
Sbjct: 355 ILIATDVAARGLDVKDVKFVINFD-----FPNNIEDYVHRIGRTGRANNKGTAYTLFSPD 409

Query: 695 K 695
            
Sbjct: 410 N 410


>gi|227502907|ref|ZP_03932956.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
 gi|227076329|gb|EEI14292.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
          Length = 452

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 78/202 (38%), Gaps = 21/202 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTG 553
            + + GF LPS         E  +     T++ SAT PG+  L   +  + + + IR   
Sbjct: 168 EMLDLGF-LPS----IEAILEALDGNAHQTMLFSATMPGA-ILNLSRQFMHKPVHIRAES 221

Query: 554 LVDPPV--EIRSARTQVEDV-----YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
             D       R    Q   +        I  A  +G R ++   TKR A  L + L ER 
Sbjct: 222 EADEVTHETTRKVTFQAHRMDKVAVIAHILQAQGRG-RSIIFTRTKRSAAQLADDLAERG 280

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
             V  +H ++    R + ++  R G+ D+LV  ++   G+D+ +   V            
Sbjct: 281 FHVGAVHGDLGQKSREKSLQAFRSGEVDILVATDIAARGIDVDDVTHVINYQV-----PD 335

Query: 667 SKTSLIQTIGRAARNVNSKVIL 688
              + I  IGR  R  ++   +
Sbjct: 336 DPMTFIHRIGRTGRAGHTGTAV 357


>gi|299141509|ref|ZP_07034645.1| transcription-repair coupling factor [Prevotella oris C735]
 gi|298576845|gb|EFI48715.1| transcription-repair coupling factor [Prevotella oris C735]
          Length = 1139

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 82/228 (35%), Gaps = 16/228 (7%)

Query: 160 LLKGIHSREK-VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           LLK +  ++     L G   S      A V E   +  + +  +   A   Y +      
Sbjct: 8   LLKLLQDKQGGNIFLQGQQASATPLLFASVAEKTVQTFLFVLQDADEAGYFYHDLTQVMG 67

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQI--DRMRHSATRSLLERNDCIVVS 276
              V +F S Y          R+  Y +++S+ NE +  + +   + R +       +VS
Sbjct: 68  TENVLFFPSSYK---------RSVKYGQRDSA-NEILRTEVLAKVSARDVKAHEALFIVS 117

Query: 277 SVSCIYGIG-SVESYSQMIVQLKI-GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
               +  +  S +   +  + LK     ++  ++  +L    ++  D     G F V G 
Sbjct: 118 YPEALAELVISKKHLDERRLSLKTGQQQIDITDVAHTLRDYGFQEVDYVYEPGQFAVRGS 177

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
            ++++    E   +R+  FG +I+ I  F             I+I   
Sbjct: 178 ILDVYSFSCE-YPYRIDFFGREIDTIRTFEVQDQLSKDKQSDIEIVPE 224



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     IIR       P+    A    E + D IN    +  
Sbjct: 725 TLTMSATPIPRTLQFSLMGARDMSIIRTPPPNRYPIHTELATFSHEVIADAINFEMSRNG 784

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   +++     R    H ++   +  +++       +DVL+   +
Sbjct: 785 QVYFVHDRINGLQEIANLIHKYVPDCRVAIGHGQMPPDKLEKVLMGFMNYDYDVLLSTTI 844

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I DA + G     + L Q  GR  R+              S+    
Sbjct: 845 VENGIDISNANTMIINDAHRFGL----SDLHQMRGRVGRSNRKAFCYLLAPPKTSLTPE- 899

Query: 702 DETTRRREKQLEHNKKHN 719
               RRR + LE+  +  
Sbjct: 900 ---ARRRLEALENFSELG 914



 Score = 37.8 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           TVL  +  +     L    +RV Y+       +  +++ DL  GK D+L+G + LL + +
Sbjct: 633 TVLAYQHYQTFKNRLKGMPVRVDYLSRARSAKQTKQVLTDLEDGKIDILIGTHKLLGKSV 692

Query: 647 DIPECGLVAILDADKEGFLRSKTSL 671
              + GL+ I +  K G    +   
Sbjct: 693 KWHDLGLLIIDEEQKFGVSTKEKLR 717


>gi|261880194|ref|ZP_06006621.1| transcription-repair coupling factor [Prevotella bergensis DSM
           17361]
 gi|270333168|gb|EFA43954.1| transcription-repair coupling factor [Prevotella bergensis DSM
           17361]
          Length = 1210

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 93/257 (36%), Gaps = 31/257 (12%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSE 212
           Q  A  +LL+      K   L G+  S      +   + +  P + +  +   A   Y++
Sbjct: 15  QCGAFVKLLE--DKSVKNVFLQGLVASSAPLFFSSAAKRLNHPFVFILQDADEAGYFYND 72

Query: 213 F---------------KNFFPHNAVEYFVSYYDYY------QPEAYVPRTDTYIEKESSI 251
                           +    H++V YF S Y              + RT+  + K SS+
Sbjct: 73  LNLSSRTPSLTGKGDDRLRETHSSVYYFPSSYRRSVKYGQRDAANEILRTE-VLSKLSSL 131

Query: 252 ---NEQIDRMRHSATRSLLER--NDCIVVSSVSCIYGIG-SVESYSQMIVQLKIGDSVEQ 305
              N   D    SA  +  ER      +V+    I  +  S     +  + LK   S++ 
Sbjct: 132 GTNNSLTDHHTSSAPPAEGERINEPLFIVTYPEAIAELVVSQTHLDERRISLKTAQSIDI 191

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
            +L+  L +  ++ +D     G F V G  I+++ S   ++ +R+  FG++I+ I  F  
Sbjct: 192 TDLVHRLRELGFEEKDYVYEPGQFAVRGSIIDVY-SFSSELPFRIDFFGDEIDTIRTFTV 250

Query: 366 LTGQKIRNVETIKIYAN 382
                      + I   
Sbjct: 251 EDQLSKDRKSGVDIVPE 267



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 74/195 (37%), Gaps = 10/195 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           TI +SATP    L+    G     I+R       P+    +    E + D IN    +  
Sbjct: 799 TITMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIHTELSTFGHEVITDAINFEMSRNG 858

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++           ++   + +   + RV   H ++   E  +++       +DVL+   +
Sbjct: 859 QVFFVNNRISNLPEIANLIQKHIPDCRVAIGHGKMSPEELEKVVMGFINYDYDVLLSTTI 918

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + I  A + G     + L Q  GR  R+ N K   Y     KS+    
Sbjct: 919 VENGIDIPNANTIIINGAHRFGL----SDLHQMRGRVGRS-NRKAFCYLLAPPKSVLT-- 971

Query: 702 DETTRRREKQLEHNK 716
            E  RR E     ++
Sbjct: 972 PEARRRLEALEAFSE 986


>gi|258653503|ref|YP_003202659.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258556728|gb|ACV79670.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
           44233]
          Length = 607

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 15/197 (7%)

Query: 524 TTIVVSAT--PGSWEL--EQCQGIIVEQIIRPTGLVDP---PVEIRSARTQVEDVYDEIN 576
              + SAT  P    +  +     +   + R +  VD       +   R +V+ +   + 
Sbjct: 202 QAALFSATMPPAIRSIAAKHMTNPVDIAVSRQSSTVDSVRQIYAVVPFRDKVDALTRFLQ 261

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +   +G   ++ V TK   + +   L  R +    M+ +V   ER +II  LR G+ DVL
Sbjct: 262 VT--EGDAAIVFVRTKEACDQVGTDLLARGVSAAVMNGDVPQKEREKIIERLRDGRLDVL 319

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLD+    LV   DA  E       + +  IGR  R   +   L   T  + 
Sbjct: 320 VATDVAARGLDVDRIDLVVNFDAPGE-----PEAYVHRIGRTGRAGRTGTALTFFTPREM 374

Query: 697 IQ-LAIDETTRRREKQL 712
            +  AI+  TR   +Q+
Sbjct: 375 GRLRAIERATRGTLEQI 391


>gi|237831253|ref|XP_002364924.1| ATP-dependent helicase, putative [Toxoplasma gondii ME49]
 gi|211962588|gb|EEA97783.1| ATP-dependent helicase, putative [Toxoplasma gondii ME49]
 gi|221487231|gb|EEE25477.1| ATP-dependent helicase, putative [Toxoplasma gondii GT1]
 gi|221506914|gb|EEE32531.1| ATP-dependent helicase, putative [Toxoplasma gondii VEG]
          Length = 395

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 84/211 (39%), Gaps = 27/211 (12%)

Query: 510 NRPLRFEEWNCLR-----PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVD 556
           NR  + + ++  R        ++VSAT     LE     + +          +   G+  
Sbjct: 178 NRGFKEQVYDIYRYLPPSTQVVLVSATLPHEVLEMTTKFMDDPFRVLVKRDELTLEGIKQ 237

Query: 557 PPVEIRSARTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
             V +   + + +   D+YD + +      + ++   TK   E L + + E N  V  MH
Sbjct: 238 FFVAVEREQWKFDTLTDLYDTLTIT-----QAVIFCNTKAKVEWLAQKMKEANFTVSRMH 292

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            ++   ER EI+R  R G+  VL+  ++   GLD+ +  LV   D        S+   I 
Sbjct: 293 GDMPQQERDEIMRQFRGGQSRVLIATDVWGRGLDVQQVSLVINYD-----LPNSRELYIH 347

Query: 674 TIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
            IGR+ R     V I +       I   I++
Sbjct: 348 RIGRSGRFGRKGVAINFVKNDDIRILRDIEQ 378


>gi|221059063|ref|XP_002260177.1| RNA helicase [Plasmodium knowlesi strain H]
 gi|193810250|emb|CAQ41444.1| RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 398

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 94/252 (37%), Gaps = 28/252 (11%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP--TTIVVS 529
            +D+ H+ + ++      +          GF        +   +E +  L P     + S
Sbjct: 155 MIDKRHLGVDRLKLFILDEADEM---LSRGF--------KAQIYEVFKKLVPDIQVALFS 203

Query: 530 ATPGSWELEQCQGIIVE---QIIRPT-----GLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           AT     LE     + +    +++       G+    V +     +++ + D        
Sbjct: 204 ATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCDLYETLTIT 263

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             + ++   T++  + LT+ ++ R   V  MH ++   +R  I+R+ R G   VLV  +L
Sbjct: 264 --QSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDL 321

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           L  G+D+ +  LV   D        S  + I  IGR+ R     V +   T     +  +
Sbjct: 322 LARGIDVQQVSLVINYD-----LPTSPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKL 376

Query: 702 DETTRRREKQLE 713
            +       Q+E
Sbjct: 377 KKIESYYSTQIE 388


>gi|218895359|ref|YP_002443770.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
 gi|228906018|ref|ZP_04069910.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 200]
 gi|228937529|ref|ZP_04100171.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228970416|ref|ZP_04131071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228976986|ref|ZP_04137394.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           Bt407]
 gi|218543277|gb|ACK95671.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
 gi|228782733|gb|EEM30903.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           Bt407]
 gi|228789302|gb|EEM37226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228822140|gb|EEM68126.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228853621|gb|EEM98386.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 200]
 gi|326938018|gb|AEA13914.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 529

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 100/257 (38%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  ++E    ++      + + EK+   I    L         +  +  
Sbjct: 351 QLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNENLSYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|75760678|ref|ZP_00740704.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228898976|ref|ZP_04063254.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 4222]
 gi|74491828|gb|EAO55018.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228860669|gb|EEN05051.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 4222]
          Length = 521

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 100/257 (38%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  ++E    ++      + + EK+   I    L         +  +  
Sbjct: 351 QLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNENLSYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|330829254|ref|YP_004392206.1| DEAD/DEAH box helicase domain-containing protein [Aeromonas veronii
           B565]
 gi|328804390|gb|AEB49589.1| DEAD/DEAH box helicase domain protein [Aeromonas veronii B565]
          Length = 633

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 9/165 (5%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +    +L+ V TK  AE+L   L  R      +H ++    R   +  LR G+ D+L+ 
Sbjct: 244 VESYEALLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIA 303

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            +++  GLD+     V   D           S +  IGR  R       IL+     + +
Sbjct: 304 TDVVARGLDVERITHVVNYD-----IPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRM 358

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKE---KIMEVIDPILLE 739
             AI+  TR+  + ++     +IN   + +   +I E +    LE
Sbjct: 359 LRAIEHATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMGEELE 403


>gi|228963331|ref|ZP_04124496.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228796359|gb|EEM43802.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 510

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 100/257 (38%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 157 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 216

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 217 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 276

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 277 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 331

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  ++E    ++      + + EK+   I    L         +  +  
Sbjct: 332 QLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNENLSYYKRIAEEMLEEND 391

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 392 SVTV--VAAALKMMTKE 406


>gi|229009737|ref|ZP_04166960.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
           2048]
 gi|229055077|ref|ZP_04195508.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
 gi|228721261|gb|EEL72786.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
 gi|228751532|gb|EEM01335.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
           2048]
          Length = 538

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIIFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  +++    ++      + + EK+   I+   L         +  +  
Sbjct: 351 QLKNIERTTKRKVDRMDAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|229165218|ref|ZP_04293010.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
 gi|228618250|gb|EEK75283.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
          Length = 519

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 157 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 216

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 217 DIQSPELAIIFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLV 276

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 277 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 331

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  +++    ++      + + EK+   I+   L         +  +  
Sbjct: 332 QLKNIERTTKRKVDRMDAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEEND 391

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 392 SVTV--VAAALKMMTKE 406


>gi|213406193|ref|XP_002173868.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001915|gb|EEB07575.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces japonicus
           yFS275]
          Length = 553

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 104/279 (37%), Gaps = 44/279 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         +D     + +++ +   +  R     + GF         P   +
Sbjct: 256 TPGRLLD--------MLDSGKTNLRRVTYLVLDEADRM---LDMGFE--------PQIRK 296

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPT-GLVDP--------PVEIRSAR 565
             + +RP   T++ SAT    E+++     ++  I+ T G +D          VE+    
Sbjct: 297 IVDQIRPDRQTVMFSAT-WPKEVQRLARDYLKDYIQVTVGSLDLAASHNITQIVEVVDPA 355

Query: 566 TQVEDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
            +   +  ++  A +    ++L+   TKR+A+++T +L +       +H +    ER  +
Sbjct: 356 DKRARLSKDLEKAMEDKESKVLVFTGTKRVADEITRFLRQDGWPALAIHGDKAQDERDWV 415

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + R GK  ++V  ++   G+D+     V   D     F  +    +  IGR  R    
Sbjct: 416 LNEFRTGKSPIMVATDVASRGIDVKGITHVFNFD-----FPGNTEDYVHRIGRTGRAGAK 470

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
                  T   S Q        R    +    K NI+P+
Sbjct: 471 GTAYTYFTQENSKQA-------RDLIGILREAKQNIDPK 502


>gi|229188506|ref|ZP_04315550.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           10876]
 gi|228594969|gb|EEK52744.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           10876]
          Length = 528

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 100/257 (38%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  ++E    ++      + + EK+   I    L         +  +  
Sbjct: 351 QLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNENLSYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|210631565|ref|ZP_03296936.1| hypothetical protein COLSTE_00821 [Collinsella stercoris DSM 13279]
 gi|210160006|gb|EEA90977.1| hypothetical protein COLSTE_00821 [Collinsella stercoris DSM 13279]
          Length = 595

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 27/237 (11%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D+   ++ Q+  +   +  R     + GF LP+       R   +      T++ SAT
Sbjct: 181 LIDQGACSLDQVQVLVLDEADRM---LDMGF-LPAVR-----RIVGYTRDDRQTLLFSAT 231

Query: 532 PGSWELEQCQGIIVEQI-------IRPTGLVDPPVE--IRSARTQVEDVYDEINLAAQQG 582
                 EQ  G I + +       I P       VE  +     + ++      L  +  
Sbjct: 232 LD----EQAVGSITDLVHDPARVEIAPVTSTADTVEQYVLPVSLEAKNALLASVLKREGA 287

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++   TK  A+  +  L    I    +H +    +R   ++  R G+ DVLV  ++L
Sbjct: 288 SRAIVFCRTKHRADACSRRLARAGITCAAIHGDRSQAQRERALKAFRAGECDVLVATDVL 347

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
             G+DI +   V   D             I  IGR  R       L   T     + 
Sbjct: 348 ARGIDISDVRYVVNFDV-----PEDPVDYIHRIGRTGRAGELGWSLTFVTPDDVAEF 399


>gi|223984537|ref|ZP_03634669.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
           12042]
 gi|223963523|gb|EEF67903.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
           12042]
          Length = 556

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 96/249 (38%), Gaps = 32/249 (12%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE----IRSARTQVEDVYDEIN 576
            T++ SAT   P      Q Q   V      T +  P +E    +     + E +   I+
Sbjct: 178 QTVLFSATMPKPILEITSQYQTNPVHIKTPQTQINTPKIEQVYYVCPKEAKKEILMQLIS 237

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +  Q     ++   TK+M ++LT  L  +      +H ++K   R  ++ + + GK ++L
Sbjct: 238 M--QNPHLAMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKINIL 295

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   G+D+    +V   D  +E         +  IGR  R       +       K
Sbjct: 296 VATDVAARGIDVDSMDVVFNYDLPQE-----SEYYVHRIGRTGRAGKEGLAVTLITARQK 350

Query: 696 SIQLAIDETTRR-------------REKQLEH---NKKHNINPQSVKEKIMEVIDPILLE 739
                ++ TTR              R+ +L+    + +H +  + V E +  +ID +  +
Sbjct: 351 YALRDLERTTRSKLTQKPLPSLEEVRKIRLDFLREDLEHRMT-RDVPEPLAAIIDTMKDD 409

Query: 740 DAATTNISI 748
             +   +++
Sbjct: 410 GYSYREMAL 418


>gi|323138624|ref|ZP_08073691.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
 gi|322396112|gb|EFX98646.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
          Length = 496

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 85/264 (32%), Gaps = 42/264 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++         D   + +  I  +   +  R     + GF  P     R  +  
Sbjct: 129 TPGRLLDFF--------DRGKLLLTGIEILVIDEADRM---LDMGFI-PDI--ERVCKLV 174

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQ 567
            +      T+  SAT    E+ +     +   IR          + +    V  R    +
Sbjct: 175 PF---TRQTLFFSAT-MPPEITRLTEAFLHNPIRIEVARASTTASTIRQALVASRGHADK 230

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            E + + I   A+     ++    KR    L   L +       +H ++  L R+  +  
Sbjct: 231 RETLRNLIRG-AENLKNAIVFCNRKRDVAILHRSLVKHGFPAGALHGDMDQLARMASLDA 289

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + G   +LV  ++   GLDIP+   V   D             +  IGR  R   S V 
Sbjct: 290 FKNGDVAILVCSDVAARGLDIPDVSHVFNFDV-----PTHSEDYVHRIGRTGRAGRSGVA 344

Query: 688 L---------YADTITKSIQLAID 702
           +         Y D I   I  AI+
Sbjct: 345 MTIVTEDDTKYIDQIQSLIGKAIE 368


>gi|296159198|ref|ZP_06842024.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295890457|gb|EFG70249.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 481

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 95/264 (35%), Gaps = 24/264 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVE-----DVYDEINL 577
            T++ SAT          GI+ + + I  +       +IR     V+     D++  +  
Sbjct: 181 QTLLFSATFTDDIRAMAAGILRDPLNISVSPPNATASKIRQWVVTVDKKNKPDLFMHLV- 239

Query: 578 AAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            A+   R  L+ V T+   + L   L E    V  +H +     R+  +   + G+  +L
Sbjct: 240 -AENNWRHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQML 298

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLDI +  LV  +D             +  IGR  R   S V +        
Sbjct: 299 VVTDVAARGLDIDDLPLVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADEA 353

Query: 696 SIQLAIDETTR---RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
               AI+   R   RRE++     +H   PQ+      E+I        +    +     
Sbjct: 354 PQLAAIEALIRQTLRREEEPGFEAEHR-VPQT--SATGEIIRKPKKPKKSRVPHAAPRDM 410

Query: 753 LSLSKKKGKAHLKSLRKQMHLAAD 776
             LSKK      +S   Q  LAA 
Sbjct: 411 QVLSKKPRP---QSGENQPKLAAQ 431


>gi|269961856|ref|ZP_06176213.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
 gi|269833434|gb|EEZ87536.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
          Length = 526

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 98/279 (35%), Gaps = 39/279 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   ++++           Q+  +   +  R     + GF      D R  +  
Sbjct: 130 TPGRLLDLYNQNAV--------KFDQLEMLVLDEADRM---LDMGFI----RDIR--KIL 172

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDV 571
           +    +   ++ SAT      +  +G++   VE  + P       VE  I  A   V+  
Sbjct: 173 DLLPKQRQNLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYPAD--VKKK 230

Query: 572 YDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
              +    + G   ++L+   TK  A  L ++L ++ I    +H       R + + D +
Sbjct: 231 APMLVKLIKDGDWKQVLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFK 290

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVIL 688
            G+  VLV  ++   G+DIP+   V   +  K          +  IGR  R     K I 
Sbjct: 291 SGEVRVLVATDIAARGIDIPQLPQVVNFELPKV-----AEDYVHRIGRTGRAGEVGKAIS 345

Query: 689 YADTITKSIQLAIDETTRRREKQLE--HNKKHNINPQSV 725
               +  S   AI+     R  Q      +     P +V
Sbjct: 346 LVCALEASELFAIE-----RLIQQLLPRKELEGYAPTNV 379


>gi|218676896|ref|YP_002395715.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218325164|emb|CAV27059.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 689

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 82/210 (39%), Gaps = 28/210 (13%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 270 TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 329

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 330 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 384

Query: 698 QLAIDETTRRREKQLEHNKKHNIN-PQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
              I+  T   + Q+E      I  PQ          D +     A     ++ ++ S +
Sbjct: 385 LRTIERVT---KSQME-----EIQLPQR---------DEVAAARVAKLGAELETEKESKA 427

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
            +     + +L++ + + A  L    AA +
Sbjct: 428 LENFAGLISTLQESLEVDAATL----AAML 453


>gi|90577457|ref|ZP_01233268.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90440543|gb|EAS65723.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 654

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 8/130 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 275 IVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVVARG 334

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDET 704
           LD+P    V   D   +       S I  IGR  R   + K IL   T    +   I+  
Sbjct: 335 LDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRTGKAILLVRTNQIRMLRTIERV 389

Query: 705 TRRR--EKQL 712
           T+ R  E QL
Sbjct: 390 TKSRMEEIQL 399


>gi|5270|emb|CAA36873.1| p68 protein [Schizosaccharomyces pombe]
          Length = 550

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 105/279 (37%), Gaps = 44/279 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         +D +   + +++ +   +  R     + GF         P   +
Sbjct: 252 TPGRLLD--------MLDSNKTNLRRVTYLVLDEADRM---LDMGFE--------PQIRK 292

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPT-GLVDP--------PVEIRSAR 565
             + +RP   T++ SAT    E+++     +   I+ T G +D          VE+    
Sbjct: 293 IVDQIRPDRQTVMFSAT-WPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNA 351

Query: 566 TQVEDVYDEINLA-AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
            +   +  +I      +  ++L+   TKR+A+D+T +L +       +H +    ER  +
Sbjct: 352 DKRARLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWV 411

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + R GK  ++V  ++   G+D+     V   D     F  +    +  IGR  R    
Sbjct: 412 LNEFRTGKSPIMVATDVASRGIDVKGITHVFNYD-----FPGNTEDYVHRIGRTGRAGAK 466

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
               Y    + + + A      R    +    K +I+P+
Sbjct: 467 GTA-YTYFTSDNAKQA------RELVSILSEAKQDIDPK 498


>gi|227875859|ref|ZP_03993985.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
 gi|269977494|ref|ZP_06184466.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1]
 gi|307700011|ref|ZP_07637060.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus
           mulieris FB024-16]
 gi|227843607|gb|EEJ53790.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
 gi|269934410|gb|EEZ90972.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1]
 gi|307614772|gb|EFN93992.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus
           mulieris FB024-16]
          Length = 523

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 73/190 (38%), Gaps = 16/190 (8%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART--------QVEDVYDE 574
            T++ SAT PG       + +     IR     D    +R              E+V   
Sbjct: 217 HTMLFSATMPGPVVALARRYMYQPTHIRAADPSDDSKTVRQVHQFAYRVHSMNKEEVVAR 276

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I  A  +GL  ++   TKR  + L + L  R      +H ++    R   +R  R GK D
Sbjct: 277 ILQAKNRGL-TIIFTRTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAFRHGKVD 335

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           VLV  ++   G+D+ +   V   +         + + I  IGR AR  +S   + + D  
Sbjct: 336 VLVATDVAARGIDVDDVTHVINFEC-----PEDEKTYIHRIGRTARAGHSGTAVTFVDWE 390

Query: 694 TKSIQLAIDE 703
           + +    I+ 
Sbjct: 391 SVTRWRVINR 400


>gi|37521894|ref|NP_925271.1| ATP-dependent RNA helicase [Gloeobacter violaceus PCC 7421]
 gi|35212893|dbj|BAC90266.1| gll2325 [Gloeobacter violaceus PCC 7421]
          Length = 384

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 94/264 (35%), Gaps = 40/264 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++         D+ +  +  +  +   +  R     E GF LP     R LR  
Sbjct: 127 TPGRLLDHF--------DQPYARLANLEILVLDEADRM---LEMGF-LPDI--RRILRHT 172

Query: 517 EWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                R  T+  SAT PG          +  +I+R    ++   +   A      VY   
Sbjct: 173 G---HRRQTLFFSATMPGPI------AKLATEILRNPVTLNQERKAAPAVGITHSVYPVA 223

Query: 576 NLAAQQ---------GLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
                +         G+R +++   TK  A  L+EYL +  I    +H      +R E +
Sbjct: 224 QNLKSKFLLELLEREGMRQVIVFTRTKHRANRLSEYLSKARISCERIHGNRSQGQRTEAL 283

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              + GK+ VLV  ++   G+DI   G V   D       ++    I  +GR AR   + 
Sbjct: 284 AGFKSGKYRVLVATDIASRGIDIEALGHVVNFDV-----PQAAEDYIHRVGRTARAERTG 338

Query: 686 -VILYADTITKSIQLAIDETTRRR 708
               +     +    AI+    +R
Sbjct: 339 DAFTFVSPEEEDQLRAIERAIGKR 362


>gi|256860906|gb|ACV32355.1| vasa [Nibea mitsukurii]
          Length = 640

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 11/139 (7%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V   S R Q+ D+            R ++ V TKR A+ +  YL +  +    +H + +
Sbjct: 435 QVTKFSKREQLLDLLKTTGT-----ERTMVFVETKRQADFIATYLCQEKVPTTSIHGDRE 489

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + + D R GK  VLV  ++   GLD+P+   V   D        +    +  IGR
Sbjct: 490 QREREQALADFRSGKCPVLVATSVAARGLDVPDVLNVVSFD-----LPNNIDEYVHRIGR 544

Query: 678 AARNVNSK-VILYADTITK 695
             R  N+   + + D    
Sbjct: 545 TGRCGNTGRAVSFYDPDAD 563


>gi|281345231|gb|EFB20815.1| hypothetical protein PANDA_010757 [Ailuropoda melanoleuca]
          Length = 404

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 209 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 268

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 269 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 323

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 324 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 378

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 379 VKNDDIRILRDIEQ 392


>gi|251764757|sp|B5FZY7|IF4A3_TAEGU RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|197128100|gb|ACH44598.1| putative DEAD box polypeptide 48 [Taeniopygia guttata]
          Length = 410

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 210 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 269

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 270 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 324

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 325 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 379

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 380 VKNDDIRILRDIEQ 393


>gi|117621384|ref|YP_857155.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117562791|gb|ABK39739.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 642

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 9/161 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +L+ V TK  AE+L   L  R      +H ++    R   +  LR G+ D+L+  +++
Sbjct: 259 EALLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVV 318

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           S +  IGR  R       IL+     + +  AI
Sbjct: 319 ARGLDVERITHVVNYD-----IPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAI 373

Query: 702 DETTRRREKQLEHNKKHNINPQSVKE---KIMEVIDPILLE 739
           +  TR+  + ++     +IN   + +   +I E +    LE
Sbjct: 374 EHATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMGEELE 414


>gi|323485816|ref|ZP_08091151.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
 gi|323400804|gb|EGA93167.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
          Length = 458

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 29/196 (14%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           R  T++ SAT    E++     ++    R        VE+    + V+ +   +    ++
Sbjct: 192 RKQTLLFSAT-MPAEIQALTDKLLHNPAR--------VEVTPVSSTVDIIDASLYYVDKE 242

Query: 582 GLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
             R               L+   TK  A+ + ++L +  I    +H +     R   +  
Sbjct: 243 NKRSLLVYLLNHEDITSTLVFTRTKHGADRVAKFLVKNRISAAAIHGDKSQGARQTALSH 302

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKV 686
            + G+  VLV  ++   G+DI E   V   D           + I  IGR  R   + + 
Sbjct: 303 FKSGEIQVLVATDIAARGIDIEELSCVINFD-----LPNIPETYIHRIGRTGRAGLDGRA 357

Query: 687 ILYADTITKSIQLAID 702
           I ++D   K+    I+
Sbjct: 358 ISFSDIEEKAYVKDIE 373


>gi|110737546|dbj|BAF00715.1| DRH1 DEAD box protein - like [Arabidopsis thaliana]
          Length = 450

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 14/183 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           +  T++ +AT      +    ++V       G VD  V  +S    +E +         +
Sbjct: 143 KRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLE 202

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  + + G +I++   TKRM + L   L  R      +H +    ER +++   R G+ 
Sbjct: 203 QILRSQEPGSKIIIFCSTKRMCDQLARNLT-RTFGAAAIHGDKSQAERDDVLNQFRSGRT 261

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VLV  ++   GLD+ +  +V   D     F       +  IGR  R   + +       
Sbjct: 262 PVLVATDVAARGLDVKDIRVVVNYD-----FPNGVEDYVHRIGRTGRAGATGLAYTFFGD 316

Query: 694 TKS 696
             +
Sbjct: 317 QDA 319


>gi|19527499|gb|AAL89864.1| RE20606p [Drosophila melanogaster]
          Length = 376

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 84/254 (33%), Gaps = 32/254 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++        VD + +T      +   +  R     + GF      D R +   
Sbjct: 90  TPGRLLDF--------VDRTFITFEDTRFVVLDEADRM---LDMGF----SEDMRRIMTH 134

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV--------DPPVEIRSARTQV 568
                   T++ SAT            +   +    G+V            E+     + 
Sbjct: 135 VTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRS 194

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +     I + ++Q    ++ V TKR A+ L  +L E+      +H +    +R + +RD 
Sbjct: 195 K----LIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDF 250

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G   VL+  ++   GLDI     V   D             +  IGR  R  N+    
Sbjct: 251 KNGSMKVLIATSVASRGLDIKNIKHVINYD-----MPSKIDDYVHRIGRTGRVGNNGRAT 305

Query: 689 YADTITKSIQLAID 702
                 K   +A D
Sbjct: 306 SFFDPEKDRAIAAD 319


>gi|68478729|ref|XP_716633.1| hypothetical protein CaO19.7392 [Candida albicans SC5314]
 gi|74656359|sp|Q5A4E2|DED1_CANAL RecName: Full=ATP-dependent RNA helicase DED1
 gi|46438305|gb|EAK97638.1| hypothetical protein CaO19.7392 [Candida albicans SC5314]
 gi|238881007|gb|EEQ44645.1| ATP-dependent RNA helicase ded1 [Candida albicans WO-1]
          Length = 672

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 71/187 (37%), Gaps = 13/187 (6%)

Query: 524 TTIVVSAT-PGSWEL---EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
            T++ SAT P   ++   +  +  +   + R  G     +  +    + ++    I    
Sbjct: 380 QTLMFSATFPRDIQMLARDFLKDYVFLSVGR-VGSTSENITQKILYVEDDEKKSVILDLL 438

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                   ++   TKRMA++L +YLY++      +H +    ER + +   + G   +LV
Sbjct: 439 SANENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILV 498

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKS 696
              +   GLDIP    V   D             +  IGR  R  N  +   + +   K+
Sbjct: 499 ATAVAARGLDIPNVSHVINYD-----LPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKN 553

Query: 697 IQLAIDE 703
           +   + E
Sbjct: 554 VVKGLIE 560


>gi|242012580|ref|XP_002427009.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212511247|gb|EEB14271.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 538

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 5/117 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+ V  KR  + +  +L E+N     +H +    ER E +RD + GK D+LV  ++  
Sbjct: 383 KCLVFVEQKRTTDFIATFLCEKNFPATSIHGDRDQREREEALRDFKTGKMDILVATSVAA 442

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            GLDI     V   D  K     +    +  IGR  R  N  +            LA
Sbjct: 443 RGLDIKNVAHVVNFDLPK-----TIDEYVHRIGRTGRVGNRGLATSFYDPLCDSHLA 494


>gi|330448082|ref|ZP_08311730.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492273|dbj|GAA06227.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 627

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 8/130 (6%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLCSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDET 704
           LD+P    V   D   +       S I  IGR  R   + K IL   T    +   I+  
Sbjct: 309 LDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRTGKAILLVRTNQIRMLRTIERV 363

Query: 705 TRRR--EKQL 712
           T+ R  E QL
Sbjct: 364 TKSRMEEIQL 373


>gi|296220513|ref|XP_002756342.1| PREDICTED: nucleolar RNA helicase 2 [Callithrix jacchus]
          Length = 799

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 93/254 (36%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGII---VEQI-IRPTGLVDPPVEIRSARTQVE------DVY 572
           P T++ SAT   W     +  +    EQ+ +         + +     Q         + 
Sbjct: 385 PQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIQCHWTQRAAVIG 444

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++         + +H ++   +R   ++  R G 
Sbjct: 445 DVIRVYSGHQGRTIIFCETKKEAQELSQ-NSAIKQDAQSLHGDIPQKQREITLKGFRNGS 503

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 504 FGVLVATNVAARGLDIPEVDLVIQSSPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 558

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QL           Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 559 HKEEYQL----------VQVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 606

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 607 ISHFKQSAEKLIEE 620


>gi|17552114|ref|NP_498646.1| Conserved Germline Helicase family member (cgh-1) [Caenorhabditis
           elegans]
 gi|75020328|sp|Q95YF3|CGH1_CAEEL RecName: Full=ATP-dependent RNA helicase cgh-1; AltName:
           Full=Conserved germline helicase 1
 gi|15150636|gb|AAK85443.1|AC006605_5 Conserved germline helicase protein 1 [Caenorhabditis elegans]
          Length = 430

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 79/225 (35%), Gaps = 35/225 (15%)

Query: 518 WNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           +       ++ SAT                +E+   + + +  + +    V    ++   
Sbjct: 212 FLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLGVTQYYAFVQEKQKVH-- 269

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
                           Q  + ++   + +  E L + + E      Y+HS++    R  +
Sbjct: 270 -------CLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRV 322

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
             D R G    LV  +LL  G+DI    +V   D     F R+  + +  IGR+ R  + 
Sbjct: 323 FHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFD-----FPRNAETYLHRIGRSGRFGHL 377

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
            V +   T           T RR E++L    +    P++V  K+
Sbjct: 378 GVAINLITYEDR------HTLRRIEQELRTRIE--PIPKTVDPKL 414


>gi|116199007|ref|XP_001225315.1| eukaryotic initiation factor 4A-12 [Chaetomium globosum CBS 148.51]
 gi|118573324|sp|Q2GWJ5|FAL1_CHAGB RecName: Full=ATP-dependent RNA helicase FAL1
 gi|88178938|gb|EAQ86406.1| eukaryotic initiation factor 4A-12 [Chaetomium globosum CBS 148.51]
          Length = 394

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 200 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCD 259

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R 
Sbjct: 260 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQ 314

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 315 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 369

Query: 691 DTITK 695
            T   
Sbjct: 370 VTSED 374


>gi|159489124|ref|XP_001702547.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280569|gb|EDP06326.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 600

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 23/199 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVE-IRSARTQ--VEDVY 572
            T++ SAT    E+++     +   +          T L+   +E +     Q  + D+ 
Sbjct: 334 QTLMFSAT-FPKEIQRLASDFLANYVFLTVGRVGSSTDLIVQHIEYVTPEEKQNTLLDLI 392

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             + ++ +QGL  L+ V TKR A++L   L    +    +H +    +R   +R  + GK
Sbjct: 393 STVEVSRRQGL-TLVFVETKRGADELERILTRNQLPATSIHGDRSQEQREMALRSFKSGK 451

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYA 690
             V+V  ++   GLDIP    V   D  K+         +  IGR  R  +       + 
Sbjct: 452 TPVMVATDVAARGLDIPHVTHVINYDLPKD-----IDDYVHRIGRTGRAGHKGLATAFFT 506

Query: 691 D---TITKSIQLAIDETTR 706
           D    + +S+   + ET +
Sbjct: 507 DSDAPLARSLVEVLTETNQ 525


>gi|94501919|ref|ZP_01308429.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
 gi|94425972|gb|EAT10970.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
          Length = 614

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 98/255 (38%), Gaps = 14/255 (5%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +    + SAT         E+      E  I+     +  +E +    +  D    +   
Sbjct: 180 KRQIALFSATMPKQIKAVAEKHLREPTEIRIKSKTATNESIEQKYWLVKGVDKNQALLRI 239

Query: 579 AQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +      +++ V TK+  E++ +Y+    +R   ++ +V   +R   +  L+ G+ D+L
Sbjct: 240 CETSEFDAMMVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDML 299

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLD+     V   D           S +  IGR  R   S   IL+     +
Sbjct: 300 VATDVAARGLDVERISHVVNYD-----IPYDAESYVHRIGRTGRAGRSGEAILFVRPRER 354

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQ---SVKEKIMEVIDPILLEDAATTNISIDAQQ 752
            +   I+  TR++ +Q+E      +N +     K + +E I+   +E        I A+Q
Sbjct: 355 RMLSTIERVTRKKIQQIELPTAKEVNAKRRDQFKVRALEHIEGRDIEIFKKIASEILAEQ 414

Query: 753 LSLSKKKGKAHLKSL 767
            +L   +  A    +
Sbjct: 415 PALDPIELAAAFAQM 429


>gi|325265712|ref|ZP_08132401.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
 gi|324982843|gb|EGC18466.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
          Length = 449

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 84/220 (38%), Gaps = 26/220 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   +E    + ++++     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKNPEVI--EIEREDKQGKIDEQLLYCDDKNHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E L + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   S + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRSGLAISFA 350

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
            + + +  A+ +  R   ++L       + P   + K  E
Sbjct: 351 EVNEYM--AVHKIERYIGRKLPEVLIEGLEPTRKRNKNAE 388


>gi|71897163|ref|NP_001025820.1| eukaryotic initiation factor 4A-III [Gallus gallus]
 gi|82197884|sp|Q5ZM36|IF4A3_CHICK RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|53127756|emb|CAG31207.1| hypothetical protein RCJMB04_3e17 [Gallus gallus]
          Length = 412

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 212 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 271

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 272 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 326

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 327 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 381

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 382 VKNDDIRILRDIEQ 395


>gi|297830638|ref|XP_002883201.1| hypothetical protein ARALYDRAFT_479492 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329041|gb|EFH59460.1| hypothetical protein ARALYDRAFT_479492 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 408

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
              +VSAT     LE     + E +        +   G+    V +     + +   D+Y
Sbjct: 210 QVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLY 269

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + L+E +   N  V  MH ++   ER EI+   R G+
Sbjct: 270 DTLTIT-----QAVIFCNTKRKVDYLSEKMRSNNFTVSSMHGDMPQKERDEIMNQFRSGE 324

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +  
Sbjct: 325 SRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVK 379

Query: 692 TITKSIQLAIDE 703
           +    I   I++
Sbjct: 380 SDDIKILRDIEQ 391


>gi|115398049|ref|XP_001214616.1| ATP-dependent RNA helicase ded1 [Aspergillus terreus NIH2624]
 gi|121737954|sp|Q0CLJ6|DED1_ASPTN RecName: Full=ATP-dependent RNA helicase ded1
 gi|114192807|gb|EAU34507.1| ATP-dependent RNA helicase ded1 [Aspergillus terreus NIH2624]
          Length = 674

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 13/172 (7%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   +      L+    + V ++   +  +   VE      +   + D ++
Sbjct: 384 QTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILH 443

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                GL  L+ V TKRMA+ L+++L  +      +H +    ER   +   R G+  +L
Sbjct: 444 THGTSGL-TLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPIL 502

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V   +   GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 503 VATAVAASGLDIPNVTHVINYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 549


>gi|27366603|ref|NP_762130.1| cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
 gi|37676317|ref|NP_936713.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|320158491|ref|YP_004190869.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
 gi|27358169|gb|AAO07120.1| Cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
 gi|37200858|dbj|BAC96683.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|319933803|gb|ADV88666.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
          Length = 641

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 70/194 (36%), Gaps = 24/194 (12%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRQGKAILLVRTNQIRM 356

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-DPILLEDAATTNISIDAQQLSLS 756
              I+  T                 +S  E+I   + D +           + A     +
Sbjct: 357 LRTIERVT-----------------KSSMEEIQLPLRDKVAAARLDKLAAELQADIEHKA 399

Query: 757 KKKGKAHLKSLRKQ 770
             K    ++ L ++
Sbjct: 400 LDKFAELIEKLEER 413


>gi|242024557|ref|XP_002432694.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212518164|gb|EEB19956.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 407

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 207 ATQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 266

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 267 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSCMHGDMPQKERDAIMKEFRT 321

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 322 GLSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINF 376

Query: 690 ADTITKSIQLAIDE 703
             +    I   I++
Sbjct: 377 VKSDDIRILRDIEQ 390


>gi|163839675|ref|YP_001624080.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162953151|gb|ABY22666.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 652

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 79/212 (37%), Gaps = 24/212 (11%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ++  V TK   E+L + L  R  R   ++ ++   +R   +  LR G  DVLV  ++   
Sbjct: 288 VIAFVRTKMATEELADKLKSRGYRAAAINGDIPQQQRERTVEALRSGSIDVLVATDVAAR 347

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+    LV   D           S +  IGR  R   S   IL+     K +  AI++
Sbjct: 348 GLDVERISLVVNYD-----IPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRAIEK 402

Query: 704 TTRRREKQLEHNKKHNINPQSVKE---KIMEVID-----------PILLEDAATTNISID 749
            TR+  +Q+       IN   + +   +I E +                ++   T   I 
Sbjct: 403 ATRQPVEQMHLPSADTINNLRLSKFADQITETLGSQELSVFRELISTYEQEHDVTAAEIA 462

Query: 750 AQQLSLSKKKGKAHLKSL----RKQMHLAADN 777
           A    +++      +K L      Q    A +
Sbjct: 463 AALAYMAQGGESLLVKDLPAAPEYQKRERAKD 494


>gi|322818915|gb|EFZ26192.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 794

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 67/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQ----VEDVYDEI 575
            T++ SAT     L   +  + +     T    G     +  +  R Q    ++ +++ I
Sbjct: 523 QTLMFSATFPQRILNLAKRYLRQHYYLLTVGRVGSTTKNITQKIVRVQESEKMDKLFEVI 582

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               Q  L +L+ V TKR AE+L   L    I    +H + +  +R   +RD + G   +
Sbjct: 583 YQQKQTDL-VLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRDFKDGITPI 641

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLD+P    V   D  KE            IGR  R  N            
Sbjct: 642 LVATDVASRGLDVPNVAHVIQYDLPKE-----MDDYTHRIGRTGRAGNKGTATSFYNKNN 696

Query: 696 S 696
            
Sbjct: 697 R 697


>gi|220904183|ref|YP_002479495.1| transcription-repair coupling factor [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868482|gb|ACL48817.1| transcription-repair coupling factor [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 1179

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 145/440 (32%), Gaps = 58/440 (13%)

Query: 259 RHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           R +A   L + R  CIV S  S +     ++ ++   + L+ G     + LL   V+  Y
Sbjct: 121 RLAALYGLAQGRPRCIVCSVESLLLRHIPLDFFAARNLDLRKGSDYAPELLLDQAVEWGY 180

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R  +    G     GD ++IFP        R+  FG+ ++E+  F   + + ++  + +
Sbjct: 181 ERVPMVTRPGEMARRGDILDIFP-TGHVKPVRLEFFGDTLDEMRVFDAESQRSLQGCDEL 239

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +   S       +L  A        + R   +  EGR+ E                   
Sbjct: 240 VLLPASPLALDAKSLAAA--------RERCDRMFAEGRISE---------------NECY 276

Query: 438 SCQSIENYSRYLTGRNPGEPPPTLF-EYIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           S +   +              P+LF +++P+DSL  +            +  G  + K  
Sbjct: 277 SFKKSLDGGGLGLLPGSVLASPSLFEDWLPKDSLWLL---PGESDSADALRDGRLNLKER 333

Query: 497 LAEYGFRLP---SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
           L      LP   S    +  +   WN      +   A P    +E+    + E   RP  
Sbjct: 334 LEAADAPLPQPASLALRKSSQPAPWN--TFQRVY--AEPLVMGVEERGLDLPE---RPLH 386

Query: 554 LVDPPVEIRSART----QVEDVYDEINLAAQQGLRILL-TVLTKRMAEDLTEYLYERNIR 608
                +++           + +   +        +I+L     +  A+ L   L E++  
Sbjct: 387 SF---IDLFPLPGAQDRPWQHLAAGLKEWKSSRRQIVLSFSSGRSRAKFLK--LAEQDGI 441

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKF----DVLVGIN--LLREGLDIPECGLVAILDADKE 662
           V  +    +      ++   R G      DVLV     L  +    P          D  
Sbjct: 442 VPALRYAPEQRGLFALVSPFRSGAELVWDDVLVLGEDILYPKAEKTPRVSSRVFKGLDSF 501

Query: 663 GFLRSKTSLIQT---IGRAA 679
             L+    L+     IGR A
Sbjct: 502 DDLKPGDLLVHRDYGIGRFA 521



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 67/185 (36%), Gaps = 7/185 (3%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-AQQGL 583
            + ++ATP    L+     I E  I  T   D      +   + ++V  ++     ++  
Sbjct: 778 VLTLTATPIPRTLQLSMSGIRELSIIETAPQDRKPVASAVLRKDDNVLRKVLEREIEREG 837

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++       +  E + EY+       R    H ++   E  + +     G+ DVLV  ++
Sbjct: 838 QVFWVYNRVQGLERVAEYVRGLVPDARVGMAHGQMSEAELEDTMHKFWHGELDVLVCTSI 897

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLD P    + +  A   G  +    L Q  GR  R+       +     + +    
Sbjct: 898 VESGLDFPRANTLVVDQAQMFGLGQ----LYQLRGRVGRSDRQAYAFFVVPDAERLTAVA 953

Query: 702 DETTR 706
           +E  R
Sbjct: 954 EERLR 958


>gi|217076282|ref|YP_002333998.1| transcription-repair coupling factor [Thermosipho africanus TCF52B]
 gi|217036135|gb|ACJ74657.1| transcription-repair coupling factor [Thermosipho africanus TCF52B]
          Length = 909

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 9/213 (4%)

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           Y+P  D +  +    +  +   R  +    L  N   V +  S    I     + + +++
Sbjct: 20  YIPSYDVFPYENLENSWFVRSKRIYSLYLALNNNLKGVATLYSITRFIMPPSIFKKYVIE 79

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LK+GD  E  E      K  Y+R       G F + GD I+ +  +  +V  R+ +F N 
Sbjct: 80  LKVGDIFESPE--ELFSKLGYERVYNVTEGGQFSIRGDIIDFYGPN--EVPTRIELFDNL 135

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRL 416
           IE+I  F P T + IR +E   I     Y+ P          I E+     ++   E ++
Sbjct: 136 IEDIRHFDPSTQKSIRKIEKALILPAREYIEPVIHETM----IGEKYNGTFLDYNVEFQI 191

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSI-ENYSRY 448
               ++ +  +     +       ++ +NY RY
Sbjct: 192 FNKPKVIESFSKKEREIRQLIMDPNLRQNYIRY 224



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 16/190 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             + +SATP    L      I +  +I+  P G  +  V + +   ++  +   I     
Sbjct: 539 NILSMSATPIPRTLHMALSGIKDMSVIKTPPFGRKNIQVYVNTYDEKI--IRQAIMREIN 596

Query: 581 QGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G ++L         ED+ + L E    + +   + ++      ++I +   GK DVLV 
Sbjct: 597 RGGQVLYVHNRVNDIEDVAKKLKEIVPEVSIDIANGQMPKKRMEKVIEEFYHGKLDVLVA 656

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT-----I 693
            +++  G+DIP    + + DA + G  +    L Q  GR  R+       +        +
Sbjct: 657 TSIIENGVDIPNANTLIVDDAHRYGLAQ----LYQLRGRVGRSDKRAFAYFFHPSKINKV 712

Query: 694 TKSIQLAIDE 703
            K    AI E
Sbjct: 713 AKERLKAIKE 722



 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 106/291 (36%), Gaps = 50/291 (17%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL--VDPPVEIRSARTQVEDVYD--- 573
           N LR  T  +S  PG  ELE+        I     L  +    E  S+   ++ +     
Sbjct: 362 NALRKNTKGISL-PGDSELEKEFAKTFPHIETQDQLKAIQEVSEDLSSEKNMDRLLAGDA 420

Query: 574 -----EINLAAQ-------QGLRILL--TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
                E+ + A        + + +L+  TVL ++  E+  +      I V    S +   
Sbjct: 421 GYGKTEVAMRAAFKAAISGKQVAVLVPTTVLARQHYENFKKRFEPFGINVELYDSSLTKK 480

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ++ E+ + +  G  DV++G + L + +   + GL+ I +  K G  + +        +  
Sbjct: 481 QKDEVKQKIETGITDVVIGTHGLLKSIKFSDLGLLIIDEEQKFGVQQKEAL------KKL 534

Query: 680 RNVNSKVILYADTITKSIQLAIDETTR----------RREKQLEHNK-KHNINPQSVKEK 728
           R   + + + A  I +++ +A+               R+  Q+  N     I  Q++  +
Sbjct: 535 RINVNILSMSATPIPRTLHMALSGIKDMSVIKTPPFGRKNIQVYVNTYDEKIIRQAIMRE 594

Query: 729 I-------------MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKS 766
           I              ++ D           +SID     + KK+ +  ++ 
Sbjct: 595 INRGGQVLYVHNRVNDIEDVAKKLKEIVPEVSIDIANGQMPKKRMEKVIEE 645



 Score = 38.9 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 130 SINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAK 187
           S+   S+    F     +  + DQ  AI ++ + + S +   +LL G  G GKT   M  
Sbjct: 372 SLPGDSELEKEFAKTFPHIETQDQLKAIQEVSEDLSSEKNMDRLLAGDAGYGKTEVAMRA 431

Query: 188 VIEAM--QRPAIVMAPNKILAAQLYSEFKNFFPH--NAVEYFVSYYDYYQPEAYVPRTDT 243
             +A    +   V+ P  +LA Q Y  FK  F      VE + S     Q +    + +T
Sbjct: 432 AFKAAISGKQVAVLVPTTVLARQHYENFKKRFEPFGINVELYDSSLTKKQKDEVKQKIET 491

Query: 244 YI 245
            I
Sbjct: 492 GI 493


>gi|157873697|ref|XP_001685353.1| ATP-dependent RNA helicase [Leishmania major strain Friedlin]
          Length = 614

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 72/193 (37%), Gaps = 16/193 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVEDVYDEINLA 578
            T++ SAT      +  +  +        G V    E     +R     ++     + + 
Sbjct: 326 QTLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQDVRWVED-MDKRGCLLEVL 384

Query: 579 AQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            + QG R+L+ V  KR A+ L  YL +  I    +H +    ER E +   + G   VLV
Sbjct: 385 KEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCRVLV 444

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT---I 693
             ++   GLDIP   +V   D        +    +  IGR  R       I + D    I
Sbjct: 445 ATDVASRGLDIPNVAVVVQYD-----LPSNIDDYVHRIGRTGRAGKRGTAISFNDKNRNI 499

Query: 694 TKSIQLAIDETTR 706
              +   + ET +
Sbjct: 500 VDDLIPLLRETNQ 512


>gi|318054604|ref|NP_001187599.1| eukaryotic initiation factor 4a-iii [Ictalurus punctatus]
 gi|308323464|gb|ADO28868.1| eukaryotic initiation factor 4a-iii [Ictalurus punctatus]
          Length = 389

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 189 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 248

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 249 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 303

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 304 GASRVLISTDVWAGGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 358

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 359 VKNDDIRILRDIEQ 372


>gi|228989414|ref|ZP_04149403.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
           DSM 12442]
 gi|228770361|gb|EEM18936.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
           DSM 12442]
          Length = 528

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I++TT+R+  ++     ++      + + EK+   I+   L         +  +  
Sbjct: 351 QLKNIEQTTKRKIDRMNAPTLDEALEGQQRLIAEKLQSTIESDNLAYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|228995609|ref|ZP_04155275.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
           Rock3-17]
 gi|228764181|gb|EEM13062.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
           Rock3-17]
          Length = 536

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 176 HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 350

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I++TT+R+  ++     ++      + + EK+   I+   L         +  +  
Sbjct: 351 QLKNIEQTTKRKIDRMNAPTLDEALEGQQRLIAEKLQSTIESDNLAYYKRIAEEMLEEND 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 411 SVTV--VAAALKMMTKE 425


>gi|163838674|ref|NP_001106217.1| eukaryotic initiation factor 4A-III [Bombyx mori]
 gi|110376569|gb|ABG73410.1| eIF4AIII protein [Bombyx mori]
          Length = 405

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 205 ATQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 264

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LT+ + E N  V  MH ++   ER  I+++ R 
Sbjct: 265 LYDTLTIT-----QAVIFCNTKRKVDWLTQKMQEANFTVSSMHGDMPQKERDNIMKEFRS 319

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 320 GQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINF 374

Query: 690 ADTITKSIQLAIDE 703
             +    I   I++
Sbjct: 375 VKSDDIRILRDIEQ 388


>gi|6320224|ref|NP_010304.1| Fal1p [Saccharomyces cerevisiae S288c]
 gi|2500524|sp|Q12099|FAL1_YEAST RecName: Full=ATP-dependent RNA helicase FAL1; AltName:
           Full=Translation initiation factor four A-like protein 1
 gi|160385737|sp|A6ZXY5|FAL1_YEAS7 RecName: Full=ATP-dependent RNA helicase FAL1; AltName:
           Full=Translation initiation factor four A-like protein 1
 gi|840874|emb|CAA89846.1| unknown [Saccharomyces cerevisiae]
 gi|1216228|emb|CAA65213.1| orf:PZC399 [Saccharomyces cerevisiae]
 gi|1431450|emb|CAA98842.1| FAL1 [Saccharomyces cerevisiae]
 gi|51830220|gb|AAU09684.1| YDR021W [Saccharomyces cerevisiae]
 gi|151942009|gb|EDN60365.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|256273263|gb|EEU08206.1| Fal1p [Saccharomyces cerevisiae JAY291]
 gi|285811043|tpg|DAA11867.1| TPA: Fal1p [Saccharomyces cerevisiae S288c]
          Length = 399

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 33/223 (14%)

Query: 515 FEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSA 564
           ++ +  L      +VVSAT     LE  +  + + +        I   G+    V +   
Sbjct: 190 YDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKE 249

Query: 565 RTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
             + +   D+YD + +      + ++   TK+  + L++ L + N  V  MH ++K  ER
Sbjct: 250 EWKFDTLCDIYDSLTIT-----QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEER 304

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            +++ D R G   VL+  ++   G+D+ +  LV   D           + I  IGR+ R 
Sbjct: 305 DKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYD-----LPEIIENYIHRIGRSGRF 359

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
               V +   T     +L        RE +  ++ K  INP  
Sbjct: 360 GRKGVAINFITKADLAKL--------REIEKFYSIK--INPMP 392


>gi|147902002|ref|NP_001081728.1| probable ATP-dependent RNA helicase DDX4 [Xenopus laevis]
 gi|82217454|sp|Q91372|DDX4_XENLA RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog;
           AltName: Full=Vasa-like protein; Short=xVLG1
 gi|2896107|gb|AAC03114.1| DEAD box protein [Xenopus laevis]
 gi|213623390|gb|AAI69679.1| DEAD box protein [Xenopus laevis]
 gi|213626590|gb|AAI69677.1| DEAD box protein [Xenopus laevis]
          Length = 700

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 19/189 (10%)

Query: 522 RPTTIVVSATPGSWELEQ--CQGIIVEQIIRPTGLV--------DPPVEIRSARTQVEDV 571
           +  T++ SAT    E+ +     +  E +    GLV           +E+R    ++E +
Sbjct: 460 KRQTLMFSAT-YPEEIRRLASNYLKSEHLFVVVGLVGGACSDVAQTVLEMRE-NGKMEKL 517

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            + +   + +  R ++ V TK+ A+ +  YL +       +H + +  +R   + D R G
Sbjct: 518 LEIL--KSSEKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDFRTG 575

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           K  V+V   +   GLDI     V   D  KE         +  IGR  R  N+       
Sbjct: 576 KCTVIVCTAVAARGLDIENVQHVINYDVPKEV-----DEYVHRIGRTGRCGNTGKATSFF 630

Query: 692 TITKSIQLA 700
            +     +A
Sbjct: 631 NVQDDHVIA 639


>gi|325115741|emb|CBZ51296.1| hypothetical protein NCLIV_043620 [Neospora caninum Liverpool]
          Length = 673

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 11/181 (6%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEI 575
            +  T++ SAT      E  +  +++ ++   G      +D   E+   + Q   +   +
Sbjct: 410 HQRQTLLFSATMPRKIQEFAKSALIDPLVVNVGRAGAANLDVVQEVEYVK-QENKLPYLL 468

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   +    +L+    K+  +D+ EYL  + +    +H  +   ER + +R  R G+ DV
Sbjct: 469 HCLQKTAPPVLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSDAVRAFREGRKDV 528

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LVG ++  +GLD P    V   D  KE       + +  IGR  R   + V        +
Sbjct: 529 LVGTDVASKGLDFPAIQHVINFDMPKE-----IENYVHRIGRTGRCGRTGVATTFVNKNQ 583

Query: 696 S 696
            
Sbjct: 584 E 584


>gi|327262701|ref|XP_003216162.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Anolis
           carolinensis]
          Length = 420

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 210 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 269

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 270 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 324

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 325 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 379

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 380 VKNDDIRILRDIEQ 393


>gi|306819140|ref|ZP_07452854.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239]
 gi|304648116|gb|EFM45427.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239]
          Length = 523

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 73/190 (38%), Gaps = 16/190 (8%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART--------QVEDVYDE 574
            T++ SAT PG       + +     IR     D    +R              E+V   
Sbjct: 217 HTMLFSATMPGPVVALARRYMYQPTHIRAADPSDDSKTVRQVHQFAYRVHSMNKEEVVAR 276

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I  A  +GL  ++   TKR  + L + L  R      +H ++    R   +R  R GK D
Sbjct: 277 ILQAKNRGL-TIIFTRTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAFRHGKVD 335

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           VLV  ++   G+D+ +   V   +         + + I  IGR AR  +S   + + D  
Sbjct: 336 VLVATDVAARGIDVDDVTHVINFEC-----PEDEKTYIHRIGRTARAGHSGTAVTFVDWE 390

Query: 694 TKSIQLAIDE 703
           + +    I+ 
Sbjct: 391 SVTRWRVINR 400


>gi|224112054|ref|XP_002316069.1| predicted protein [Populus trichocarpa]
 gi|222865109|gb|EEF02240.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 16/176 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP---------VEIRSARTQVEDVYDE 574
            T++ +AT      +    ++V  +    G VD           VE+     + +   ++
Sbjct: 327 QTLMFTATWPKEVRKIASDLLVHPVQVNIGSVDVLSANKSITQYVEVVPQMEK-DRRLEQ 385

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I    ++G + ++   TKR+ + L      RN     +H +    ER   +   R GK  
Sbjct: 386 ILRTQERGSKAIIFCSTKRLCDQLARS-IGRNFGAAAIHGDKSQGERDWALNQFRSGKSP 444

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           +LV  ++   GLDI +  +V   D     F       +  IGR  R   + V    
Sbjct: 445 ILVATDVAARGLDIKDIRIVINYD-----FPSGIEDYVHRIGRTGRAGATGVSYTF 495


>gi|194760837|ref|XP_001962639.1| GF14338 [Drosophila ananassae]
 gi|190616336|gb|EDV31860.1| GF14338 [Drosophila ananassae]
          Length = 1472

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 88/255 (34%), Gaps = 34/255 (13%)

Query: 457  PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
             P  L +++ + + +  +++   +                + + GF        R +   
Sbjct: 1187 TPGRLLDFV-DRTFITFNDTRFVV----------LDEADRMLDMGF----SESMRKIMTH 1231

Query: 517  EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQ 567
                    T++ SAT    E+++  G  +   +  T          +     E+     +
Sbjct: 1232 RTMRSEHQTLMFSAT-FPEEIQRLAGEFLNNYVFVTIGVVGGACSDVQQTIYEVNKFNKR 1290

Query: 568  VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
             +    EI      G   ++ V TKR A+ L  +L E       +H +    +R + +RD
Sbjct: 1291 SK--LMEILREDANG--TIVFVETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALRD 1346

Query: 628  LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
             + GK  VL+  ++   GLDI     V   D        +    +  IGR  R  N+   
Sbjct: 1347 FKTGKMKVLIATSVAARGLDIKNVKHVVNFD-----MPNNIADYVHRIGRTGRVGNNGRA 1401

Query: 688  LYADTITKSIQLAID 702
                 + +   LA D
Sbjct: 1402 TSFFDVDQDRSLAGD 1416


>gi|320167743|gb|EFW44642.1| eIF4AIII protein [Capsaspora owczarzaki ATCC 30864]
          Length = 413

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 78/199 (39%), Gaps = 17/199 (8%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDE 574
              ++VSAT     LE     + + I        +   G+    + +     + + + D 
Sbjct: 211 TQVVIVSATLPHEVLEITTKFMTDPIRILVKRDELTLEGIKQFFISVEREEWKFDTLCDL 270

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            +       + ++   T+R  E L E + + N  V +MH E+   ER  I++  R G   
Sbjct: 271 YDTLIIT--QAVIFCNTRRKVEFLAEEMAKANFTVSHMHGEMDQKERDTIMKQFRSGATR 328

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VL+  +L   G+D+ +  LV   D        ++ + I  IGR+ R   S V +   T  
Sbjct: 329 VLITTDLWARGIDVQQVSLVINYD-----LPINRENYIHRIGRSGRFGRSGVAINFVTND 383

Query: 695 KSIQLAIDETTRRREKQLE 713
                 + +  +    Q+E
Sbjct: 384 DV--RTLRDIEQYYATQIE 400


>gi|91087239|ref|XP_975511.1| PREDICTED: similar to eIF4AIII CG7483-PA [Tribolium castaneum]
 gi|270010579|gb|EFA07027.1| hypothetical protein TcasGA2_TC009998 [Tribolium castaneum]
          Length = 404

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 22/193 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              +++SAT     LE     + + I        +   G+    V +     + +   D+
Sbjct: 205 TQVVLISATLPHEILEITSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 264

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R G
Sbjct: 265 YDTLTIT-----QAVIFCNTKRKVDWLTEKMRENNFTVSSMHGDMPQKERDNIMKEFRSG 319

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
           +  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I + 
Sbjct: 320 QSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFV 374

Query: 691 DTITKSIQLAIDE 703
            +    I   I++
Sbjct: 375 KSDDIRILRDIEQ 387


>gi|71418343|ref|XP_810822.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70875414|gb|EAN88971.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 395

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
             ++VSAT     LE  +  + E +        I    ++   V +   + + E + D  
Sbjct: 197 QVVLVSATLPVDVLEMTEKFMTEPVRILVRRDEITVDSIMQYFVAVDEEKNKFETLCDLY 256

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +         ++   T++  E L + + +    V  MH ++   ER EI+R+ R GK  V
Sbjct: 257 DTLTIAH--AVIFCNTRKKVEQLAKKMRKEKFSVSCMHGDMPQAERDEIMRNFREGKSRV 314

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  +L   G+D+ +  LV   D        S+   I  IGR  R     + +      +
Sbjct: 315 LISTDLWSRGIDVEQVSLVLNYD-----LPFSREQYIHRIGRTGRMGRKGLAISFVKHDE 369


>gi|323305584|gb|EGA59325.1| Fal1p [Saccharomyces cerevisiae FostersB]
          Length = 408

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 33/223 (14%)

Query: 515 FEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSA 564
           ++ +  L      +VVSAT     LE  +  + + +        I   G+    V +   
Sbjct: 190 YDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKE 249

Query: 565 RTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
             + +   D+YD + +      + ++   TK+  + L++ L + N  V  MH ++K  ER
Sbjct: 250 EWKFDTLCDIYDSLTIT-----QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEER 304

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            +++ D R G   VL+  ++   G+D+ +  LV   D             I  IGR+ R 
Sbjct: 305 DKVMNDFRTGHSRVLISTDVWXRGIDVQQVSLVINYD-----LPEIIEXYIHRIGRSGRF 359

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
               V +   T     +L        RE +  ++ K  INP  
Sbjct: 360 GRKGVAINFITKADLAKL--------REIEKFYSIK--INPMP 392


>gi|195542171|gb|ACF98296.1| eIF-4A [Pennisetum glaucum]
          Length = 407

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 76/192 (39%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             +++SAT     LE     + E +        +   G+    V +     + +   D+Y
Sbjct: 209 QVVLISATLPHEILEMTSKFMTEPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLY 268

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R G 
Sbjct: 269 DTLTIT-----QAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQQERDAIMTEFRSGA 323

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I +  
Sbjct: 324 TRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVR 378

Query: 692 TITKSIQLAIDE 703
                I   I++
Sbjct: 379 KDDIRILRDIEQ 390


>gi|301090390|ref|XP_002895410.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262098662|gb|EEY56714.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 565

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 77/207 (37%), Gaps = 14/207 (6%)

Query: 491 FHRKATLAEYGFRLP--SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
              K    + G R+      +     F  +   R  T++ SAT      +  + ++V+ +
Sbjct: 247 RLCKYICLDEGDRMLDLGFDEEVAATFNHFTSQR-QTLLFSATMPQKFQDFAKDVLVKPV 305

Query: 549 IRPTGL-----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
           +   G      +D   E+   + Q   +   +    +    +++    K   +D+ EYL 
Sbjct: 306 LVNVGRAGAANLDVIQEVEYVK-QDAKIVYLLECLQKTSPPVVIFCERKGDVDDIYEYLI 364

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            + +    +H      ER E I   + G+ DVLV  ++  +GLD P+   V   D   E 
Sbjct: 365 LKGVEAASIHGGKDQEERNEAIDLFKSGQKDVLVATDVAAKGLDFPDIKHVINFDMPAE- 423

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYA 690
                 + +  IGR  R   + V    
Sbjct: 424 ----IENYVHRIGRTGRCGKTGVATTF 446


>gi|332971571|gb|EGK10521.1| ATP-dependent RNA helicase [Kingella kingae ATCC 23330]
          Length = 481

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 72/186 (38%), Gaps = 24/186 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   +E    + ++E+     +    +  
Sbjct: 203 QTLLFSAT-----WDGAVGKLARKLTKNPEVI--EIEREDKQGKIEEQLLYCDDKNHKNR 255

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E L + LYE+      +H ++    R   + DLR G
Sbjct: 256 LLDHILRDANIDQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 315

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   S + +   
Sbjct: 316 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRSGIAISFA 370

Query: 692 TITKSI 697
            + + +
Sbjct: 371 EVNEYM 376


>gi|321260432|ref|XP_003194936.1| ATP-dependent RNA helicase DBP2 (p68-like protein) [Cryptococcus
           gattii WM276]
 gi|317461408|gb|ADV23149.1| ATP-dependent RNA helicase DBP2 (p68-like protein), putative
           [Cryptococcus gattii WM276]
          Length = 537

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 87/209 (41%), Gaps = 22/209 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR-PTGLVDPP--------VEIRSARTQVEDVYDE 574
            T++ SAT    E+++     +   I+   G +D          VE+ +   +   +   
Sbjct: 289 QTLLFSAT-WPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSH 347

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +   +Q+  ++L+ V TKR+A+DLT++L         +H + +  ER  ++ + + G+  
Sbjct: 348 LEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSP 407

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +++  ++   GLD+ + G V   D     F  +    I  IGR  R           T+ 
Sbjct: 408 IMLATDVASRGLDVRDIGYVINYD-----FPNNCEDYIHRIGRTGRAGRKGTSYTYFTMD 462

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            S        + R   Q+    K +I P+
Sbjct: 463 NS-------KSARELVQILRESKADIPPE 484


>gi|224024964|ref|ZP_03643330.1| hypothetical protein BACCOPRO_01695 [Bacteroides coprophilus DSM
           18228]
 gi|224018200|gb|EEF76198.1| hypothetical protein BACCOPRO_01695 [Bacteroides coprophilus DSM
           18228]
          Length = 423

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 91/222 (40%), Gaps = 37/222 (16%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       E+II+   +     ++      +E 
Sbjct: 182 QTIMFSATMPTKIQQLAKTILTNPVEVKLAVSKPAEKIIQAAYICYEAQKL----GIIES 237

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           ++ E     QQ  R+++   +K   +++T+ L    + V  MHS++   +R  I+ + R 
Sbjct: 238 LFKE-----QQPERVIIFASSKIKVKEVTKALKRLKLNVGEMHSDLDQSQREAIMHEFRN 292

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+ ++LV  +++  G+DI +  LV   D             +  IGR AR  N    +  
Sbjct: 293 GRINMLVATDIVARGIDIDDIRLVINYDV-----PHDSEDYVHRIGRTARANNDGCAITF 347

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
                     + ET + + KQ+E+  +  I    V E++ E 
Sbjct: 348 ----------VSETEQNKFKQIENFLEKEIYKIPVPEELGEA 379


>gi|170038849|ref|XP_001847260.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167862451|gb|EDS25834.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 709

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 14/171 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            TI+ SAT  PG   L Q       Q+      +  T  V   +E+     +   V   +
Sbjct: 472 QTIMTSATWPPGVRRLAQSYMKNPVQVYVGTLDLAATHTVTQQIEVIDEEDKYVRVMGFV 531

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                +  + ++    K  A+DL+       I  + +H +    +R + + D++ G   V
Sbjct: 532 KN-MGKNDKAIIFCGRKTRADDLSSEFVLSGINCQSIHGDRDQADREQALEDIKSGDVRV 590

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           L+  ++   GLDI +   V   D     F R+    +  +GR  R   + +
Sbjct: 591 LIATDVASRGLDIEDITHVVNYD-----FPRNIEEYVHRVGRTGRAGRTGI 636


>gi|323349512|gb|EGA83736.1| Fal1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 399

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 33/223 (14%)

Query: 515 FEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSA 564
           ++ +  L      +VVSAT     LE  +  + + +        I   G+    V +   
Sbjct: 190 YDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKE 249

Query: 565 RTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
             + +   D+YD + +      + ++   TK+  + L++ L + N  V  MH ++K  ER
Sbjct: 250 EWKFDTLCDIYDSLTIT-----QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEER 304

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            +++ D R G   VL+  ++   G+D+ +  LV   D           + I  IGR+ R 
Sbjct: 305 DKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYD-----LPEIIENYIHRIGRSGRF 359

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
               V +   T     +L        RE +  ++ K  INP  
Sbjct: 360 GRKGVAINFITKADLAKL--------REIEKFYSIK--INPMP 392


>gi|259145266|emb|CAY78530.1| Fal1p [Saccharomyces cerevisiae EC1118]
 gi|323309503|gb|EGA62714.1| Fal1p [Saccharomyces cerevisiae FostersO]
 gi|323334268|gb|EGA75650.1| Fal1p [Saccharomyces cerevisiae AWRI796]
          Length = 399

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 33/223 (14%)

Query: 515 FEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSA 564
           ++ +  L      +VVSAT     LE  +  + + +        I   G+    V +   
Sbjct: 190 YDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKE 249

Query: 565 RTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
             + +   D+YD + +      + ++   TK+  + L++ L + N  V  MH ++K  ER
Sbjct: 250 EWKFDTLCDIYDSLTIT-----QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEER 304

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            +++ D R G   VL+  ++   G+D+ +  LV   D           + I  IGR+ R 
Sbjct: 305 DKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYD-----LPEIIENYIHRIGRSGRF 359

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
               V +   T     +L        RE +  ++ K  INP  
Sbjct: 360 GRKGVAINFITKADLAKL--------REIEKFYSIK--INPMP 392


>gi|321479177|gb|EFX90133.1| hypothetical protein DAPPUDRAFT_300157 [Daphnia pulex]
          Length = 404

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 204 ATQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 263

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 264 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDTIMKEFRN 318

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 319 GQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINF 373

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 374 VKNDDIRILRDIEQ 387


>gi|212702598|ref|ZP_03310726.1| hypothetical protein DESPIG_00624 [Desulfovibrio piger ATCC 29098]
 gi|212674039|gb|EEB34522.1| hypothetical protein DESPIG_00624 [Desulfovibrio piger ATCC 29098]
          Length = 1192

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 91/251 (36%), Gaps = 33/251 (13%)

Query: 259 RHSATRSLLER-NDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQY 317
           R +A   L +    C+++S+ + +      + +++  + L  G     + +L   V+  Y
Sbjct: 138 RLAALYGLAQGGPRCLILSTEALLLRHVPRDFFAEHTLDLTRGSDYPPELILDQAVEWGY 197

Query: 318 KRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377
           +R  +    G     GD  +IFPS       R+  FG+ +EE+  F   + + ++ ++ +
Sbjct: 198 ERVPLVTRPGQMARRGDIFDIFPSGY-PRPVRMEFFGDTLEELRLFDAESQRSLQGLDEM 256

Query: 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +     +V     L  A        + R+  L    R+ E          D    + T 
Sbjct: 257 TLLPALPFVLDAQGLAAA--------RKRMDALFAGARISE---------NDCYTFKKTL 299

Query: 438 SCQSIENYSRYLTGRNPG---EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
               +        G  PG   E   T+ +++PE+ L F+         + G         
Sbjct: 300 DAGGL--------GLLPGVVHEKASTIADWLPEEPLWFLPGQADCDAALHGTAMQLRD-- 349

Query: 495 ATLAEYGFRLP 505
             L E    LP
Sbjct: 350 -QLEEDDAPLP 359



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 15/189 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---ED--VYDEINLAA 579
            + ++ATP    L+     I +  +  T   D     +   T V   +D  +   +    
Sbjct: 795 VLTLTATPIPRTLQLSMSGIRDLSVIETAPQDR----KPVATAVLRRDDATLRTVLEREL 850

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
            +  ++       +  E + EY+ +     R    H ++   E    +     G+ DVLV
Sbjct: 851 AREGQVFWVYNRVQGLERVAEYVRKLVPTARVGMAHGQMSESELESNMHKFWHGELDVLV 910

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  GLD P    + +  A   G  +    L Q  GR  R+       +    T+ +
Sbjct: 911 CTAIVESGLDFPRANTLVVDQAQLFGLGQ----LYQLRGRVGRSDRQAYAFFVVPDTEHL 966

Query: 698 QLAIDETTR 706
               +E  R
Sbjct: 967 SEVAEERLR 975


>gi|71756053|ref|XP_828941.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70834327|gb|EAN79829.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
 gi|261334867|emb|CBH17861.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 401

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 75/189 (39%), Gaps = 16/189 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
             ++VSAT     L+  +  + E +        I    ++   V +   + + + + D  
Sbjct: 203 QVVLVSATLPVDVLDMTEKFMTEPVRILVKRDEITVDSIMQYFVSVDEEKNKFDTLCDLY 262

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +         ++   T++  E L + + +    V +MH ++   ER EI+R+ R GK  V
Sbjct: 263 DTLTIAH--AVIFCNTRKKVEQLAKKMTKEKFTVSFMHGDMPQAERDEIMRNFREGKSRV 320

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           L+  +L   G+D+ +  LV   D        S+   I  IGR  R       I +     
Sbjct: 321 LISTDLWSRGIDVEQISLVLNYD-----LPFSREQYIHRIGRTGRMGRKGLAISFVKHDE 375

Query: 695 KSIQLAIDE 703
             +   I++
Sbjct: 376 LRLLRDIEQ 384


>gi|134102495|ref|YP_001108156.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|291004114|ref|ZP_06562087.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915118|emb|CAM05231.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 578

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 6/157 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK++ E+L E L  R      ++ ++    R   I  LR G+ D+LV  ++   
Sbjct: 244 MIVFVRTKQLTEELAEKLQARGFSAAAINGDIPQAARERTIGHLREGRVDILVATDVAAR 303

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     + +  +I++
Sbjct: 304 GLDVERISHVLNYD-----IPHDSESYVHRIGRTGRAGRSGEAILFVSPRERHMLRSIEK 358

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
            TR+   Q+E      +N Q + +    + D +   D
Sbjct: 359 ATRQSIGQMELPSIEAVNDQRLAKFAQGITDTLAKGD 395


>gi|312085225|ref|XP_003144594.1| hypothetical protein LOAG_09017 [Loa loa]
 gi|307760242|gb|EFO19476.1| hypothetical protein LOAG_09017 [Loa loa]
          Length = 802

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 6/136 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +    ++  A +     L+ V TKR A DL  YL +    V  +H ++K  +R + +   
Sbjct: 590 KSFLMDLLDAGEPSALTLVFVETKRGASDLAYYLQKDGYNVVAIHGDLKQFDREKHLETF 649

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           R G   +LV   +   GLDIP    V   D             +  IGR  R  N     
Sbjct: 650 RSGVAPILVATAVAARGLDIPNVKHVINYD-----LPSDIDEYVHRIGRTGRVGNVGLAT 704

Query: 688 LYADTITKSIQLAIDE 703
            + +   ++I   + E
Sbjct: 705 SFFNDKNRNIARDLAE 720


>gi|322824367|gb|EFZ29795.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 395

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
             ++VSAT     LE  +  + E +        I    ++   V +   + + E + D  
Sbjct: 197 QVVLVSATLPVDVLEMTEKFMTEPVRILVRRDEITVDSIMQYFVAVDEEKNKFETLCDLY 256

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +         ++   T++  E L + + +    V  MH ++   ER EI+R+ R GK  V
Sbjct: 257 DTLTIAH--AVIFCNTRKKVEQLAKKMRKEKFSVSCMHGDMPQAERDEIMRNFREGKSRV 314

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  +L   G+D+ +  LV   D        S+   I  IGR  R     + +      +
Sbjct: 315 LISTDLWSRGIDVEQVSLVLNYD-----LPFSREQYIHRIGRTGRMGRKGLAISFVKHDE 369


>gi|313213311|emb|CBY37141.1| unnamed protein product [Oikopleura dioica]
          Length = 499

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 16/185 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT    E+++     ++   +   + +  +       QV +V  + + A +   
Sbjct: 235 QTLMFSAT-WPKEIQKLASDFMKTPTQIF-IGNQELTANPNIEQVVEVVSDFDKAMRFNY 292

Query: 584 --------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   +IL+   TKR  ++L   +    +R   +H +    ER  +++D R G+  V
Sbjct: 293 WFQQITSTKILVFTDTKRDCDNLAYTMSNGRVRCAAIHGDKDQRERERVLKDFRNGQISV 352

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI + G V   D     F       +  IGR AR    K    +    K
Sbjct: 353 LVATDVAARGLDIDDIGTVINYD-----FPSQLEDYVHRIGRTAR-GEKKGKSISFITAK 406

Query: 696 SIQLA 700
           S + A
Sbjct: 407 SAKHA 411


>gi|291242437|ref|XP_002741112.1| PREDICTED: eukaryotic translation initiation factor 4A-like
           [Saccoglossus kowalevskii]
          Length = 398

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 78/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               I+ SAT     LE     + E I        +   G+    V +     + +   D
Sbjct: 198 ATQVILFSATLPHEILEMTHKFMTEPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 257

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 258 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRS 312

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 313 GASRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 367

Query: 690 ADTITKSIQLAIDE 703
             +    I   I++
Sbjct: 368 VKSDDIRILRDIEQ 381


>gi|221131953|ref|XP_002164829.1| PREDICTED: similar to LOC556764 protein [Hydra magnipapillata]
          Length = 674

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 14/130 (10%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++  + ++   TKR  +D+T  L +       +H +    ER  ++++ R GK  +L+  
Sbjct: 351 EKENKTIIFCETKRKTDDITRRLRKDGWPAMCIHGDKSQPEREWVLKEFRSGKAPILIAT 410

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL---------YA 690
           ++   GLDIP+   V   D     +  S    I  IGR AR  N+             YA
Sbjct: 411 DVASRGLDIPDINFVVNYD-----YPNSGEDYIHRIGRTARAGNTGTAYTFFTSANGKYA 465

Query: 691 DTITKSIQLA 700
             + K ++ A
Sbjct: 466 AELLKVMEEA 475


>gi|149912233|ref|ZP_01900811.1| ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149804692|gb|EDM64744.1| ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 421

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 17/203 (8%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD--PPVEIRSARTQVEDVYDEI--- 575
            R  T++ SAT     +++    ++ + +  T         +I      V++   +    
Sbjct: 177 RRQQTMLFSATLEGRGIDRFAEELLNEPVEFTANPSRREKAKIHQFMHHVDNHAHKQALL 236

Query: 576 --NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
              L  +   R ++ V T+    +L  YL  ++I   Y+  E+   +R   +   +  K 
Sbjct: 237 VHWLRDESTTRSIVFVKTRERLAELVSYLQSQDIPCAYLRGEMDQAKRTRSLNQFKNDKV 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VL+  ++   G+D+ +   V   D       RS    +  IGR AR       +     
Sbjct: 297 KVLIATDVAARGIDVQDVSHVFNFD-----LPRSAEIYVHRIGRTARAGKKGTAISLVEA 351

Query: 694 TK-----SIQLAIDETTRRREKQ 711
                   I+   +ET +RR  Q
Sbjct: 352 HDLRIFGKIERYTEETIKRRVIQ 374


>gi|72389634|ref|XP_845112.1| nucleolar RNA helicase II [Trypanosoma brucei TREU927]
 gi|62176655|gb|AAX70758.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
 gi|62360172|gb|AAX80591.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
 gi|70801646|gb|AAZ11553.1| nucleolar RNA helicase II, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
 gi|261328479|emb|CBH11456.1| nucleolar RNA helicase Gu, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 632

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 90/248 (36%), Gaps = 23/248 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIR--PTGLVDPPVEIRSARTQV------EDVYD 573
           +  T++ SAT   W          ++ I     G +     IR  R +         + D
Sbjct: 231 KHQTLLFSATVPDWVHTCSFISKNKKFIDMVGQGAMRAANTIRFYRRKCGFAEVSSMLAD 290

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            + + + +  R L+   TK+   DL+  +    +  + +H +++  +R   ++  R  KF
Sbjct: 291 LVKVYSGRHGRTLIFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKSFRDNKF 348

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VL+  ++   GLD+P   LV               + I   GR  R     V +     
Sbjct: 349 SVLIATDVAARGLDLPMVDLVIQCAP-----PTDIDAFIHRAGRTGRAGRKGVCVLLHQP 403

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
               +  ++   R  + + E      + P   +E+I++ +     ED A    S     +
Sbjct: 404 KD--EYVVERIERHAKIKFE------VLPAPTREEILKAVARDAAEDMARVERSATNLFM 455

Query: 754 SLSKKKGK 761
             + +  K
Sbjct: 456 DQAAELLK 463


>gi|296876849|ref|ZP_06900897.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           15912]
 gi|296432351|gb|EFH18150.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           15912]
          Length = 523

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVD-QYYIRVKEGEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELAIIFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNVDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   +   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKTGQSITFVSPNEM 348

Query: 696 SIQLAIDETTRRREKQL-------EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K +           K  +  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGMKPATAEEAFQAKKQVALKKIERDFEDEKIRTNFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    + ++   ++ SL  Q
Sbjct: 409 AAEF---TPEELAMYILSLTVQ 427


>gi|46484671|gb|AAS98242.1| excinuclease ABC subunit B [Listonella anguillarum]
          Length = 110

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 10/107 (9%)

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK--- 758
           DET RRREKQ  HN++  I PQ++K  + ++++   +  +    ++       +++    
Sbjct: 1   DETDRRREKQQAHNEEQGITPQALKRNVKDIMELGDITKSKQQRMNKQVPLSKVAESSQT 60

Query: 759 -------KGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPY 798
                  + +  +  L   M+  A NL FE AA  RD+I++L+    
Sbjct: 61  YEIFTPLQLEKEIAKLEGLMYKHAQNLEFELAAEKRDQIEKLRQQFI 107


>gi|15215678|gb|AAK91384.1| AT3g19760/MMB12_21 [Arabidopsis thaliana]
 gi|25090064|gb|AAN72219.1| At3g19760/MMB12_21 [Arabidopsis thaliana]
          Length = 408

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
              +VSAT     LE     + E +        +   G+    V +     + +   D+Y
Sbjct: 210 QVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLY 269

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + L+E +   N  V  MH ++   ER  I+ + R G 
Sbjct: 270 DTLTIT-----QAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGD 324

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +  
Sbjct: 325 SRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVK 379

Query: 692 TITKSIQLAIDE 703
           +    I   I++
Sbjct: 380 SDDIKILRDIEQ 391


>gi|312867114|ref|ZP_07727324.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
 gi|311097243|gb|EFQ55477.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
          Length = 536

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVD-QYYIRVKEGEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   +   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKTGQSITFVSPNEM 348

Query: 696 SIQLAIDETTRRREKQL-------EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K +           K  +  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGMKPATAEEAFQAKKQVALKKIERDFEDEKIRTNFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    + ++   ++ SL  Q
Sbjct: 409 AAEF---TPEELAMYILSLTVQ 427


>gi|147918815|ref|YP_687459.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
 gi|110622855|emb|CAJ38133.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
          Length = 451

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 115/324 (35%), Gaps = 38/324 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ +   +  ++  + +                + + GF          L  E
Sbjct: 126 TPGRLMDHLTKQKSIKGNDVKMLV----------LDEADEMLDMGFIDDIYAVMEKLPAE 175

Query: 517 EWNCLRPTTIVVSATPGSW------ELEQCQGII--VEQIIRPTGLVDPPVEIRSARTQV 568
                   T++ SAT          EL +   I+    + ++   +    VE+  +  + 
Sbjct: 176 R------QTLLFSATMSPEIKKIAVELMKKPHIVGQESKKVKSPAISQHYVEVHES-GKF 228

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +   ++   Q     ++ V TK   ++L E L  R      +H ++    R  I++  
Sbjct: 229 EALCRILD--TQCPDLAIVFVRTKVRVDELQEGLTRRGYAAVGLHGDMDQQRRNSIMKQF 286

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-I 687
           + GK  VLV  ++   GLDI +   V   D  ++       S +  IGR  R   S + I
Sbjct: 287 KNGKTQVLVATDVAARGLDISDVSHVFNFDIPRD-----PESYVHRIGRTGRAGKSGISI 341

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA-----A 742
            +       +   I++ + RR +++E         +  ++ I  + +    EDA      
Sbjct: 342 TFVTFREIKLLKLIEQVSARRMERMEVPTLEEAIEEQQRKVIDSLREAAYGEDALRYRHL 401

Query: 743 TTNISIDAQQLSLSKKKGKAHLKS 766
              +  D   ++L        +K 
Sbjct: 402 AEKLLNDNDSVTLVSAALTMLIKE 425


>gi|71019993|ref|XP_760227.1| hypothetical protein UM04080.1 [Ustilago maydis 521]
 gi|74701057|sp|Q4P733|DED1_USTMA RecName: Full=ATP-dependent RNA helicase DED1
 gi|46099796|gb|EAK85029.1| hypothetical protein UM04080.1 [Ustilago maydis 521]
          Length = 672

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 67/185 (36%), Gaps = 12/185 (6%)

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           G  +P  MD + L F          +          L++   + V ++   +  +   +E
Sbjct: 376 GEDMPGVMDRQTLMFSATFPRDIQLL------AKDFLKEYVFLSVGRVGSTSENITQKIE 429

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
                 +   + D +      GL  L+ V TKRMA+ L+++L    I    +H +    E
Sbjct: 430 YVEDDDKRSVLLDVLASMPSGGL-TLIFVETKRMADMLSDFLLRSKIGATSIHGDRTQRE 488

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R   +   R GK  ++V   +   GLDIP    V   D             +  IGR  R
Sbjct: 489 RERALELFRSGKTPIMVATAVAARGLDIPNVTHVVNYD-----LPSDVDDYVHRIGRTGR 543

Query: 681 NVNSK 685
             N  
Sbjct: 544 AGNVG 548


>gi|19113315|ref|NP_596523.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces pombe 972h-]
 gi|10720389|sp|P24782|DBP2_SCHPO RecName: Full=ATP-dependent RNA helicase dbp2; AltName:
           Full=p68-like protein
 gi|173419|gb|AAA35319.1| p68 RNA helicase [Schizosaccharomyces pombe]
 gi|3810840|emb|CAA21801.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces pombe]
          Length = 550

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 105/279 (37%), Gaps = 44/279 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         +D +   + +++ +   +  R     + GF         P   +
Sbjct: 252 TPGRLLD--------MLDSNKTNLRRVTYLVLDEADRM---LDMGFE--------PQIRK 292

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPT-GLVDP--------PVEIRSAR 565
             + +RP   T++ SAT    E+++     +   I+ T G +D          VE+    
Sbjct: 293 IVDQIRPDRQTVMFSAT-WPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNA 351

Query: 566 TQVEDVYDEINLA-AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
            +   +  +I      +  ++L+   TKR+A+D+T +L +       +H +    ER  +
Sbjct: 352 DKRARLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWV 411

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + R GK  ++V  ++   G+D+     V   D     F  +    +  IGR  R    
Sbjct: 412 LNEFRTGKSPIMVATDVASRGIDVKGITHVFNYD-----FPGNTEDYVHRIGRTGRAGAK 466

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
               Y    + + + A      R    +    K +I+P+
Sbjct: 467 GTA-YTYFTSDNAKQA------RELVSILSEAKQDIDPK 498


>gi|326903247|gb|EGE50180.1| LOW QUALITY PROTEIN: hypothetical protein TBPG_01112 [Mycobacterium
           tuberculosis W-148]
          Length = 125

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 29/124 (23%)

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA------------------ 750
            KQ+ +N+ + I+PQ +++KI +++D +  E   T  + +                    
Sbjct: 1   AKQIAYNEANGIDPQPLRKKIADILDQVYREADDTAVVEVGGSGRNASRGRRAQGEPGRA 60

Query: 751 ---------QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQG 801
                       ++ + +    +K L  QM  AA +L FE AAR RDEI  LK     +G
Sbjct: 61  VSAGVFEGRDTSAMPRAELADLIKDLTAQMMAAARDLQFELAARFRDEIADLKRE--LRG 118

Query: 802 LDDS 805
           +D +
Sbjct: 119 MDAA 122


>gi|21410145|gb|AAH30895.1| Ddx21 protein [Mus musculus]
          Length = 689

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 97/254 (38%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W         +     V+ I + T      VE  + +    +    + 
Sbjct: 279 PQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIG 338

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++    +    + +H ++   +R   ++  R G 
Sbjct: 339 DVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFRNGN 397

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 398 FGVLVATNVAARGLDIPEVDLVVQSCPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 452

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QLA          Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 453 NKEEYQLA----------QVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 500

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 501 ISHFKQSAEKLIEE 514


>gi|302335558|ref|YP_003800765.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
 gi|301319398|gb|ADK67885.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
          Length = 510

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 85/252 (33%), Gaps = 22/252 (8%)

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           ++H+   Q+  +   D      + + GF LP+         E        T++ SAT   
Sbjct: 182 DAHLGEVQVLVLDEADR-----MLDMGF-LPAMRKIVGRTPEG-----RQTLLFSATLDG 230

Query: 535 WELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ--GLRILLTV 589
                 + ++ + +   I   G     +E        E  +  +    +     R+++  
Sbjct: 231 HVTSNTESLVKDPVRVEIAHKGTAAETIEQFVLGVSPEAKHAALTHVLENEGAERVIVFC 290

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
             K  A+ +   L  +      +H      +R   +R  R G   VLV  ++L  G+DIP
Sbjct: 291 RGKHRADGICRRLRRKGFSAAPIHGNRSQNQRERALRGFREGSVGVLVATDVLARGIDIP 350

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           +   V   D   +         I  IGR  R   S   L   T    + L   E    R 
Sbjct: 351 DVAYVVNFDVPGD-----AEDYIHRIGRTGRAGESGWALTFVTEDDYLDLRDVEKLMGRV 405

Query: 710 KQLEHNKKHNIN 721
               + + H I+
Sbjct: 406 V-PTYPRAHGID 416


>gi|19173435|ref|NP_597238.1| P68-LIKE PROTEIN (DEAD BOX FAMILY OF RNA HELICASES)
           [Encephalitozoon cuniculi GB-M1]
 gi|74664187|sp|Q8SRB2|DBP2_ENCCU RecName: Full=ATP-dependent RNA helicase DBP2
 gi|19171024|emb|CAD26414.1| P68-LIKE PROTEIN (DEAD BOX FAMILY OF RNA HELICASES)
           [Encephalitozoon cuniculi GB-M1]
          Length = 495

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 93/250 (37%), Gaps = 36/250 (14%)

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGF------RLPSCMDNRPLRFEEWNCLRPTTIV 527
           D+ H  + +++ +   +  R     + GF       +P    NR             T++
Sbjct: 226 DQGHAPLSRVTFLVLDEADRM---LDMGFEPQLRKIIPKTNANR------------QTLM 270

Query: 528 VSAT-PGS-------WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
            SAT P         +  E  Q ++  + ++    +   VE+ S R + + +   ++   
Sbjct: 271 WSATWPREVRGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGREKEDKLIGVLDNF- 329

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +G ++++    KR  +DL   L         +H +     R +++ D R G+  +L+  
Sbjct: 330 -KGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIAT 388

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            +   GLD+ +  LV   D     F  S    +  IGR AR    + I +          
Sbjct: 389 EVAGRGLDVNDVKLVINFD-----FPGSCEDYVHRIGRTARGNTKEGISHTFFTVGDKAN 443

Query: 700 AIDETTRRRE 709
           A +     RE
Sbjct: 444 ARELIRMLRE 453


>gi|171693103|ref|XP_001911476.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946500|emb|CAP73301.1| unnamed protein product [Podospora anserina S mat+]
          Length = 488

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L      + + +        +   GL    + +     + +   D
Sbjct: 287 ATQVVVVSATLPHDVLTMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCD 346

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R 
Sbjct: 347 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQ 401

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 402 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 456

Query: 691 DTITK 695
            T   
Sbjct: 457 VTTED 461


>gi|19073987|ref|NP_584593.1| PUTATIVE ATP-DEPENDENT RNA HELICASE (DEAD box family)
           [Encephalitozoon cuniculi GB-M1]
 gi|19068629|emb|CAD25097.1| PUTATIVE ATP-DEPENDENT RNA HELICASE (DEAD box family)
           [Encephalitozoon cuniculi GB-M1]
          Length = 503

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 94/254 (37%), Gaps = 33/254 (12%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D  H     +S +          L + GF +P            +      T + SAT
Sbjct: 221 LIDLLHRKKVDLSEIRMFVLDEADKLLDMGFEIPIR------EIHGFVPKNTQTCLFSAT 274

Query: 532 PGSW----------ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
                         E +    I  E +     +    VE+R+ +  + ++    ++  + 
Sbjct: 275 YSPKLTRMINYFLPEDKVSIEISSETL---KNIRQEIVEVRNKKKMLLNILKGPDINLKG 331

Query: 582 GLR-------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             R       +L+ V  K    ++ + L +  I    +H + +  +R E ++  R G+F 
Sbjct: 332 SWRMEVQPDKVLVFVERKSECGEVEKVLKKSGILCVSLHGDKEQADRDEALKGFRNGRFP 391

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD-T 692
           V+V  ++   G+DI +  LV   D  K+         I  IGR  R   S K I + D  
Sbjct: 392 VMVATSVAARGIDIKDVKLVINYDIPKD-----IKEYIHRIGRTGREGKSGKSISFYDGG 446

Query: 693 ITKSIQLAIDETTR 706
           +T  ++ A+ E  R
Sbjct: 447 MTADLKKALVEVLR 460


>gi|162148769|ref|YP_001603230.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787346|emb|CAP56941.1| putative ATP-dependent RNA helicase rhlE [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 390

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 89/250 (35%), Gaps = 31/250 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++  D+ + +D  H T   +    R        + + GF      D R +   
Sbjct: 148 TPGRLLDHL-ADATITLD--HTTCLVLDEADR--------MLDLGFV----EDVRAIAAR 192

Query: 517 EWNCLRPTTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
               +R  T++ SAT        G   L +   I   +   P   +   V    A  +  
Sbjct: 193 L--PVRHQTLLFSATMSPAISALGRQLLHKPLQIAPPEQAAPPPRIRQQVIFTPAARKAA 250

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   +    + G R ++   TK+ A+ L   L    +    +H +   + R   + D R
Sbjct: 251 SLLAVL--RREAGGRTMVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFR 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+  VLV  +++  G+D+    LV   D           + I  IGR AR       L 
Sbjct: 309 RGRLLVLVATDVMARGIDVEGVALVVNFD-----IPEQPETYIHRIGRTARAGRRGTALS 363

Query: 690 ADTITKSIQL 699
                + ++L
Sbjct: 364 LCDPAERLKL 373


>gi|47214951|emb|CAG10773.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 557

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 12/147 (8%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++  + ++ V TKR  ++LT  +         +H +    ER  ++ + R GK  +L+  
Sbjct: 300 EKENKTIIFVETKRRCDELTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIAT 359

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   GLD+ +   V   D     +  S    I  IGR AR+  +       T   +++ 
Sbjct: 360 DVASRGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSQKTGTAYTFFTPN-NMKQ 413

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVK 726
           A D         +       INP+ ++
Sbjct: 414 AGD------LISVLREANQAINPKLIQ 434


>gi|242810274|ref|XP_002485548.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218716173|gb|EED15595.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 667

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 76/209 (36%), Gaps = 16/209 (7%)

Query: 568 VEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           V DV     L      R  L+  +       LTE   +  I  RY+ +      R E + 
Sbjct: 288 VNDVTVRSWLTHASDRRSTLVFCVDIEHVHQLTEAFRDNGIDARYITANTPRQTRNEELE 347

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             + G++ VL+   L  EG DIP    V +    +     SK+ LIQ IGR  R    K 
Sbjct: 348 AFKRGEYPVLLNCGLFTEGTDIPNIDCVVLARPTR-----SKSLLIQMIGRGLRLHPEKE 402

Query: 687 ILYADTITKSIQLAIDET--------TRRREKQLEHNKKHNINPQSVKEKIMEV--IDPI 736
             +   +  ++   I  T              Q     +     + +   I +V  + P+
Sbjct: 403 NCHIIDMVSTLNTGIMSTPTLFGLDPDEALNTQSVQEIRKQKEQEDISSPIPDVSYVRPL 462

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLK 765
             ++   T  + D+    L+ ++   H++
Sbjct: 463 REDEVDVTFTTYDSVFDLLNDERVDRHIR 491



 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ------RPAIVMAPNKILA 206
           Q  +I  +L+ +        L   TGSGKT    ++I  +          +++A  K L 
Sbjct: 65  QEESIQSVLEHLEKGHNRLGLSLATGSGKTVIFTQLIGRVPPRNGGANQTLIIAHRKELV 124

Query: 207 AQLYSEFKNFFPHNAVE 223
            Q     +  +P  ++E
Sbjct: 125 EQAARHCRLAYPDKSIE 141


>gi|66825831|ref|XP_646270.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|74897412|sp|Q55D61|IF4A_DICDI RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=ATP-dependent RNA helicase tifA
 gi|60474009|gb|EAL71946.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 405

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 12/188 (6%)

Query: 523 PTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
              ++VSAT     +   +  +   V  +++   L    ++      + ED         
Sbjct: 206 TQIVLVSATLTQDVVSMTEKFMTKPVRILLKRDELTLDGIKQFFVSVEKEDWKFGTLCDI 265

Query: 580 QQGLRI---LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              L I   ++   TK+  + LTE + + N  V  MH ++   ER EII+  R G+  VL
Sbjct: 266 YDSLTITQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVL 325

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           +  ++L  G+D+ +  LV   D         + + I  IGR+ R     V I +      
Sbjct: 326 ITTDILARGIDVQQVSLVINYD-----LPIDRENYIHRIGRSGRFGRKGVAINFVKNSDI 380

Query: 696 SIQLAIDE 703
            I   I++
Sbjct: 381 RILRDIEQ 388


>gi|242067108|ref|XP_002454843.1| hypothetical protein SORBIDRAFT_04g038330 [Sorghum bicolor]
 gi|241934674|gb|EES07819.1| hypothetical protein SORBIDRAFT_04g038330 [Sorghum bicolor]
          Length = 407

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 75/192 (39%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
              ++SAT     LE     + E +        +   G+    V +     + +   D+Y
Sbjct: 209 QVCLISATLPHEILEMTSKFMTEPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLY 268

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R G 
Sbjct: 269 DTLTIT-----QAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQQERDAIMGEFRSGD 323

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I +  
Sbjct: 324 TRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVR 378

Query: 692 TITKSIQLAIDE 703
                I   I++
Sbjct: 379 KDDIRILRDIEQ 390


>gi|162464317|ref|NP_001105848.1| putative RH2 protein [Zea mays]
 gi|84322402|gb|ABC55720.1| putative RH2 protein [Zea mays]
 gi|146217167|gb|ABQ10647.1| RNA helicase 2 [Zea mays]
 gi|194700534|gb|ACF84351.1| unknown [Zea mays]
          Length = 407

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 76/192 (39%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             +++SAT     LE     + E +        +   G+    V +     + +   D+Y
Sbjct: 209 QVVLISATLPHEILEMTSKFMTEPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLY 268

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R G 
Sbjct: 269 DTLTIT-----QAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQQERDAIMGEFRSGA 323

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I +  
Sbjct: 324 TRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVR 378

Query: 692 TITKSIQLAIDE 703
                I   I++
Sbjct: 379 KDDIRILRDIEQ 390


>gi|302783318|ref|XP_002973432.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii]
 gi|300159185|gb|EFJ25806.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii]
          Length = 506

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 21/194 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT    E+++     +   I          T L+   VE      +   + D I
Sbjct: 243 QTMLFSAT-FPREIQRLAADFLYNYIFLAVGRVGSSTDLIVQRVEYVHDVDKRSMLMDMI 301

Query: 576 NLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +     GL      IL+ V TKR A+ L ++L +  I    +H +   +ER   +R  R 
Sbjct: 302 HAQKPNGLNGQLPLILVFVETKRGADSLEDWLIQMGISATTIHGDRTQVEREHALRSFRT 361

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VIL 688
           G   +LV  ++   GLDIP    V   D             +  IGR  R   S      
Sbjct: 362 GVTPILVATDVAARGLDIPHVAHVINYD-----LPSDIDDYVHRIGRTGRAGKSGFATAF 416

Query: 689 YADTITKSIQLAID 702
           + D  T   +  +D
Sbjct: 417 FTDKDTSLARPLVD 430


>gi|168828898|gb|ACA33927.1| vasa [Salvelinus leucomaenis]
          Length = 662

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 70/182 (38%), Gaps = 16/182 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR--------PTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      +     + +  +             V+  V   +  ++ + + + +
Sbjct: 414 QTLMFSATYPEDIQKLAGDFLKKDYLFLAVGVVGGACSDVEQVVVQVTKFSKRDQLLEVL 473

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R GK  V
Sbjct: 474 KTTGS--ERTMVFVETKRQADFIATFLCQEKVNTTSIHGDREQREREQALGDFRSGKCPV 531

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLDI +   +   D        +    +  IGR  R  N+   + + D   
Sbjct: 532 LVATSVAARGLDIKDVQHIVNFD-----LPNNIDEYVHRIGRTGRCGNTGRAVCFFDPEA 586

Query: 695 KS 696
            S
Sbjct: 587 DS 588


>gi|301067543|ref|YP_003789566.1| superfamily II DNA and RNA helicase [Lactobacillus casei str.
           Zhang]
 gi|300439950|gb|ADK19716.1| Superfamily II DNA and RNA helicase [Lactobacillus casei str.
           Zhang]
          Length = 502

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 97/249 (38%), Gaps = 21/249 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE---IRSARTQVEDVYDEI 575
              T++ SAT  +  +      + E +   I+   L    VE   +R+   +  DV   +
Sbjct: 174 ARQTLLFSATIPASIMRLTNKFMHEPVTVKIKAKELTADTVEQYYVRAKDYEKFDVMTRL 233

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L  L+   TKR  ++LT  L  R  R   +H ++   +R+ ++R  + G+ D 
Sbjct: 234 FDVQDPDL-ALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDF 292

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R  +  V + +     
Sbjct: 293 LVATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNE 347

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
                 I++ T++R   ++        P + +E +M  I   L    A    +   +  +
Sbjct: 348 IEYLHTIEDLTKKRMLPMK--------PPTAEEALMGQISSGLETIKAQVEANDTEKYEA 399

Query: 755 LSKKKGKAH 763
           +++   + +
Sbjct: 400 MAESLLENY 408


>gi|295106692|emb|CBL04235.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 530

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 75/215 (34%), Gaps = 19/215 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI----IRP 551
            + + GF LP          E        T++ SAT     +++  G ++       I  
Sbjct: 158 RMLDMGF-LPDVTTIVDATPEC-----RQTLLFSAT-IDQSIQKNLGSLLNDPAMVEIAR 210

Query: 552 TGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
            G     VE  +   +   +    E  L  +   RI++   TK   ED  E L +   R 
Sbjct: 211 NGETAKTVEQFMMPIKNFNKPELLEAVLREKGSERIIVFARTKNRTEDCAEALCDAGFRA 270

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +HS+     R   + + R GK  +LV  ++L  G+D+P+   V   D           
Sbjct: 271 ESIHSDKSQGARRRALENFRRGKTSILVATDVLARGIDVPDVDHVINFD-----LPDMPE 325

Query: 670 SLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
             +  IGR  R       I +    T      I+ 
Sbjct: 326 DYVHRIGRTGRAGEKGYAISFVTRETSRTLRDIER 360


>gi|260830758|ref|XP_002610327.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
 gi|229295692|gb|EEN66337.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
          Length = 655

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 91/255 (35%), Gaps = 30/255 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVE---IR-SARTQVEDVY 572
           P T+  SAT  +W  E      + +   V+ I          VE   IR   + +   + 
Sbjct: 274 PQTLFFSATLPNWVHEAARKYMKAEPKHVDMIGTEQNRSATTVEHLAIRCGWQARAPVIA 333

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYE-RNIRVRYMHSEVKTLERIEIIRDLRLG 631
           D I + + Q  R ++   TK+ A  L   L        + +H ++   +R   ++  R G
Sbjct: 334 DIITMYSGQHGRAMVFCETKKEANQLV--LEGVLKQEAQVLHGDIPQAQRELTLKSFRDG 391

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
              VLV  ++   GLDIPE  LV   +   +       S I   GR  R   + V +   
Sbjct: 392 NIQVLVATDVAARGLDIPEVDLVVQCEPPSDV-----DSYIHRSGRTGRAGRTGVCVCFY 446

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
              +   L   E    R   ++  + +   P  + +            D+A     +  +
Sbjct: 447 KPNREQDLRFVE----RRAGIKFRQINAPQPDDIVKA--------AANDSARAIEEVPDK 494

Query: 752 QLSLSKKKGKAHLKS 766
            L+  ++  +  +  
Sbjct: 495 MLTHFQEAAEKLIAE 509


>gi|70985190|ref|XP_748101.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus fumigatus Af293]
 gi|66845729|gb|EAL86063.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus fumigatus Af293]
          Length = 505

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 85/219 (38%), Gaps = 28/219 (12%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI------- 548
            L   GFR       R L            +VVSAT     L+     + + +       
Sbjct: 263 ELLNRGFREQIYDVYRYLPP------ATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRD 316

Query: 549 -IRPTGLVDPPVEIRSARTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
            +   G+    + +     + +   D+YD + +      + ++   T+R  + LT+ + E
Sbjct: 317 ELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTIT-----QAVIFCNTRRKVDWLTDKMRE 371

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            N  V  MH E+   ER  I++D R G   VL+  ++   G+D+ +  LV   D      
Sbjct: 372 ANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYD-----L 426

Query: 665 LRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
             ++ + I  IGR+ R     V I +  +    I   I+
Sbjct: 427 PTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIE 465


>gi|315181381|gb|ADT88294.1| ATP-dependent RNA helicase DeaD [Vibrio furnissii NCTC 11218]
          Length = 632

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 74/194 (38%), Gaps = 26/194 (13%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTRRR--EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
              I+  TR    E QL H                   D +     +   I ++A++   
Sbjct: 357 LRTIERVTRSSMEEIQLPHR------------------DKVAEARLSQLAIELEAEKEHA 398

Query: 756 SKKKGKAHLKSLRK 769
           S +K    ++ L+ 
Sbjct: 399 SLEKFAELVEKLQA 412


>gi|225719408|gb|ACO15550.1| Eukaryotic initiation factor 4A-III [Caligus clemensi]
          Length = 403

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
                ++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 203 FTQICLISATLPHEILEMTSKFMADPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 262

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH +V   ER +I+++ R 
Sbjct: 263 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDVPQKERDDIMKEFRS 317

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 318 GQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINF 372

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 373 VKNDDIRILRDIEQ 386


>gi|58268226|ref|XP_571269.1| p68-like protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|74684726|sp|Q5KFM6|DBP2_CRYNE RecName: Full=ATP-dependent RNA helicase DBP2-A
 gi|57227504|gb|AAW43962.1| p68-like protein, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 540

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 86/209 (41%), Gaps = 22/209 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR-PTGLVDPP--------VEIRSARTQVEDVYDE 574
            T++ SAT    E+++     +   I+   G +D          VE+ +   +   +   
Sbjct: 290 QTLLFSAT-WPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSH 348

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +   +Q+  ++L+ V TKR+A+DLT++L         +H + +  ER  ++ + + G+  
Sbjct: 349 LEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSP 408

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +++  ++   GLD+ + G V   D     F  +    I  IGR  R           T+ 
Sbjct: 409 IMLATDVASRGLDVRDIGYVINYD-----FPNNCEDYIHRIGRTGRAGRKGTSYTYFTMD 463

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            S          R   Q+    K +I P+
Sbjct: 464 NS-------KAARELVQILRESKADIPPE 485


>gi|58268224|ref|XP_571268.1| p68-like protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|57227503|gb|AAW43961.1| p68-like protein, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 527

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 86/209 (41%), Gaps = 22/209 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR-PTGLVDPP--------VEIRSARTQVEDVYDE 574
            T++ SAT    E+++     +   I+   G +D          VE+ +   +   +   
Sbjct: 277 QTLLFSAT-WPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSH 335

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +   +Q+  ++L+ V TKR+A+DLT++L         +H + +  ER  ++ + + G+  
Sbjct: 336 LEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSP 395

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +++  ++   GLD+ + G V   D     F  +    I  IGR  R           T+ 
Sbjct: 396 IMLATDVASRGLDVRDIGYVINYD-----FPNNCEDYIHRIGRTGRAGRKGTSYTYFTMD 450

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            S          R   Q+    K +I P+
Sbjct: 451 NS-------KAARELVQILRESKADIPPE 472


>gi|116495993|ref|YP_807727.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334]
 gi|191639473|ref|YP_001988639.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
 gi|227533029|ref|ZP_03963078.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239630391|ref|ZP_04673422.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|116106143|gb|ABJ71285.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334]
 gi|190713775|emb|CAQ67781.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
 gi|227189430|gb|EEI69497.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239526674|gb|EEQ65675.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|327383567|gb|AEA55043.1| DEAD box helicase family protein [Lactobacillus casei LC2W]
 gi|327386759|gb|AEA58233.1| DEAD box helicase family protein [Lactobacillus casei BD-II]
          Length = 502

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 97/249 (38%), Gaps = 21/249 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE---IRSARTQVEDVYDEI 575
              T++ SAT  +  +      + E +   I+   L    VE   +R+   +  DV   +
Sbjct: 174 ARQTLLFSATIPASIMRLTNKFMHEPVTVKIKAKELTADTVEQYYVRAKDYEKFDVMTRL 233

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L  L+   TKR  ++LT  L  R  R   +H ++   +R+ ++R  + G+ D 
Sbjct: 234 FDVQDPDL-ALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDF 292

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R  +  V + +     
Sbjct: 293 LVATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNE 347

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
                 I++ T++R   ++        P + +E +M  I   L    A    +   +  +
Sbjct: 348 IEYLHTIEDLTKKRMLPMK--------PPTAEEALMGQISSGLETIKAQVEANDTEKYEA 399

Query: 755 LSKKKGKAH 763
           +++   + +
Sbjct: 400 MAESLLENY 408


>gi|39939200|ref|NP_950966.1| superfamily II DNA/RNA helicase [Onion yellows phytoplasma OY-M]
 gi|39722309|dbj|BAD04799.1| superfamily II DNA and RNA helicase [Onion yellows phytoplasma
           OY-M]
          Length = 552

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 82/201 (40%), Gaps = 30/201 (14%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++    +L   TK+  +++T YL ++      +H ++K  +R  ++ + R GK  +L+  
Sbjct: 240 KKDYSAILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIAT 299

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   GLDI +  +V   D   E         +  IGR  R     +     +  K  QL
Sbjct: 300 DVAARGLDISDIKMVINYDLPHE-----DEVYVHRIGRTGRAGKKGLAYSLISPRKVSQL 354

Query: 700 AIDETTRRREKQLEHNKKHNIN----P----------QSVKEKIMEVIDPILLEDAATTN 745
                     K+LE+  K  I     P          + +++K++ +I+    EDA    
Sbjct: 355 ----------KKLEYYLKEKITLLDIPSVQSIKLQNAKDLEKKLLNIIEKNN-EDATPNQ 403

Query: 746 ISIDAQQLSLSKKKGKAHLKS 766
           ++    +   S++  +  LK 
Sbjct: 404 LAQKLLETFSSEQIIQGLLKK 424


>gi|3986285|dbj|BAA34993.1| DjVLGA [Dugesia japonica]
          Length = 726

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 77/217 (35%), Gaps = 23/217 (10%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIR--PTGLVDPPVEIRSA---RTQVEDVYDEINL 577
            T++ SAT P   ++     +     +R    G     +  R       +  D   +I  
Sbjct: 402 QTLMFSATFPREIQMLASDFLKDYLFLRVGKVGSTSQNITQRIVYVDENEKRDHLLDILT 461

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                  IL+ V TKR A+ L  +L+     V  +H +    +R   ++  R G   +LV
Sbjct: 462 DIDSDSLILVFVETKRGADALEGFLHTEGSCVASIHGDRSQSDRELALQSFREGSTPILV 521

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITK 695
              +   GLDIP    V   D             +  IGR  R  N    +  Y D    
Sbjct: 522 ATRVAARGLDIPNVKFVINYD-----LPTDIEEYVHRIGRTGRVGNLGEAISFYTDKNNN 576

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
             +  +D         LE N+   I P  +++KI E 
Sbjct: 577 VAKELVD-------ILLEANQ---IVPDWLRDKIGEA 603


>gi|312218576|emb|CBX98521.1| hypothetical protein [Leptosphaeria maculans]
          Length = 679

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 16/175 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD-------- 573
              T++ SAT         +  + E I    G V    E  +   +VE V D        
Sbjct: 387 ARQTLMFSATFPRDIQMLARDFLKEYIFLSVGRVGSTSE--NITQKVEYVEDADKRSVLL 444

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I      GL  L+ V TKRMA+ L+++L  +      +H +    ER + +   R G+ 
Sbjct: 445 DILHTHGAGL-TLIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRNGRC 503

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            +LV   +   GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 504 PILVATAVAARGLDIPNVKHVVNYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 553


>gi|222640112|gb|EEE68244.1| hypothetical protein OsJ_26445 [Oryza sativa Japonica Group]
          Length = 2897

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 14/175 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YDEI 575
            T++ +AT      +    ++ + +    G +D  V  +S    VE V         ++I
Sbjct: 782 QTLMYTATWPKEVTKIAGDLLKDPVQVNIGSIDELVANKSITQYVEVVPPLDKQRRLEQI 841

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A ++G ++++   TK+M + L      R+     +H +    ER  ++   R G+  +
Sbjct: 842 LRAQERGSKVIIFCSTKKMCDQLARD-IGRSFGAASIHGDKSQAERDNVLNQFRTGRAPI 900

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           LV  ++   GLDI +  +V   D     F       +  IGR  R   + V    
Sbjct: 901 LVATDVAARGLDIKDIRVVINYD-----FPTGIEDYVHRIGRTGRAGATGVSYTF 950


>gi|218190304|gb|EEC72731.1| hypothetical protein OsI_06346 [Oryza sativa Indica Group]
          Length = 1382

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 14/175 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YDEI 575
            T++ +AT      +    ++ + +    G +D  V  +S    VE V         ++I
Sbjct: 782 QTLMYTATWPKEVTKIAGDLLKDPVQVNIGSIDELVANKSITQYVEVVPPLDKQRRLEQI 841

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A ++G ++++   TK+M + L      R+     +H +    ER  ++   R G+  +
Sbjct: 842 LRAQERGSKVIIFCSTKKMCDQLARD-IGRSFGAASIHGDKSQAERDNVLNQFRTGRAPI 900

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           LV  ++   GLDI +  +V   D     F       +  IGR  R   + V    
Sbjct: 901 LVATDVAARGLDIKDIRVVINYD-----FPTGIEDYVHRIGRTGRAGATGVSYTF 950


>gi|297612409|ref|NP_001068490.2| Os11g0689400 [Oryza sativa Japonica Group]
 gi|77552592|gb|ABA95389.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
 gi|255680379|dbj|BAF28853.2| Os11g0689400 [Oryza sativa Japonica Group]
          Length = 1398

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 14/175 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YDEI 575
            T++ +AT      +    ++ + +    G +D  V  +S    VE V         ++I
Sbjct: 783 QTLMYTATWPKEVTKIAGDLLKDPVQVNIGSIDELVANKSITQYVEVVPPLDKQRRLEQI 842

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A ++G ++++   TK+M + L      R+     +H +    ER  ++   R G+  +
Sbjct: 843 LRAQERGSKVIIFCSTKKMCDQLARD-IGRSFGAASIHGDKSQAERDNVLNQFRTGRAPI 901

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           LV  ++   GLDI +  +V   D     F       +  IGR  R   + V    
Sbjct: 902 LVATDVAARGLDIKDIRVVINYD-----FPTGIEDYVHRIGRTGRAGATGVSYTF 951


>gi|328768329|gb|EGF78376.1| eIF4AIII protein [Batrachochytrium dendrobatidis JAM81]
          Length = 445

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 80/193 (41%), Gaps = 22/193 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              +++SAT     L+     + + +        +   G+    V +     + +   D+
Sbjct: 214 TQVVILSATLPHDVLDMTSKFMTDPVRVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL 273

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   T+R  + LTE + E N  V  MH E+   ER  I+++ R G
Sbjct: 274 YDTLTIT-----QAVIFCNTRRKVDWLTEKMREANFTVAAMHGEMPQKERDAIMQEFRSG 328

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
              VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V I + 
Sbjct: 329 ASRVLITTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINFV 383

Query: 691 DTITKSIQLAIDE 703
                +I   I++
Sbjct: 384 KNDDVNILRDIEQ 396


>gi|85057334|ref|YP_456250.1| superfamily II DNA/RNA helicase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789439|gb|ABC65171.1| superfamily II DNA and RNA helicase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 547

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 71/174 (40%), Gaps = 29/174 (16%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++    +L   TK+  +++T YL ++      +H ++K  +R  ++ + R GK  +L+  
Sbjct: 240 KKDYSTILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIAT 299

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   GLDI +  +V   D   E         +  IGR  R     +     +  K  QL
Sbjct: 300 DVAARGLDISDIKMVINYDLPHE-----DEVYVHRIGRTGRAGKKGLAYSLISPRKVSQL 354

Query: 700 AIDETTRRREKQLEHNKKHNIN----P----------QSVKEKIMEVIDPILLE 739
                     K+LE+  K  I     P          + +++KI+ +I+    E
Sbjct: 355 ----------KKLEYYLKEKITLLDIPSVQSIKLQNAKDLEKKILNIIEKNKEE 398


>gi|86145756|ref|ZP_01064085.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
 gi|85836455|gb|EAQ54584.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
          Length = 665

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 82/210 (39%), Gaps = 28/210 (13%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTRRREKQLEHNKKHNIN-PQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
              I+  T   + Q+E      I  PQ          D +     A     ++ ++ S +
Sbjct: 357 LRTIERVT---KSQME-----EIQLPQR---------DEVAAARVAKLGAELETEKESKA 399

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
            +     + +L++ + + A  L    AA +
Sbjct: 400 LENFAGLISTLQESLEVDAATL----AAML 425


>gi|229101040|ref|ZP_04231822.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-28]
 gi|228682378|gb|EEL36473.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-28]
          Length = 374

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 21  HQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 80

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 81  DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 140

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     + +   T  +S 
Sbjct: 141 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESG 195

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  ++E    ++      + + EK+   I+   L         +  +  
Sbjct: 196 QLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEEND 255

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A LK + K+
Sbjct: 256 SVTV--VAAALKMMTKE 270


>gi|54295187|ref|YP_127602.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
 gi|53755019|emb|CAH16507.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
          Length = 589

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 89/236 (37%), Gaps = 13/236 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           +    + SAT   + + Q     +       IR        +E R     V    D +  
Sbjct: 180 KKQMALFSAT-MPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIR 238

Query: 578 AAQ-QGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             + +  + +++ V TK   E++ E L +  +R   +H ++    R  II   + G  D+
Sbjct: 239 VLEVEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDI 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLD+     V   D   +       + +  IGR  R   S V IL+     
Sbjct: 299 LVATDVAARGLDVERVTHVINYDMPHDN-----ETYVHRIGRTGRAGRSGVTILFVTPKE 353

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
             +  +I+  TR+R ++++    H I     +  +  +   +  E   +    ++ 
Sbjct: 354 SRLISSIERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEE 409


>gi|94984710|ref|YP_604074.1| DEAD/DEAH box helicase-like protein [Deinococcus geothermalis DSM
           11300]
 gi|94554991|gb|ABF44905.1| ATP-dependent RNA helicase DbpA [Deinococcus geothermalis DSM
           11300]
          Length = 591

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 95/262 (36%), Gaps = 33/262 (12%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ-VEDVYDEINLAAQ 580
              T++ SAT     L      +  + +R   +VD   E +S   Q VE +  ++     
Sbjct: 179 ARQTMLFSAT-----LNDEIHRLARKYLREPVVVDLVGEGKSQAAQSVEHLKVKVGRTRT 233

Query: 581 Q----------GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +            + ++   TKR A++L   L  R I    +H ++   +R   +   R 
Sbjct: 234 RVLADLLTVYNPEKAIVFTRTKREADELANELIHRGIESEALHGDLAQSQRERALGAFRS 293

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VIL 688
           G+  VLV  ++   GLDIPE  LV      +    +   S +   GR  R   +   +++
Sbjct: 294 GRVGVLVATDVAARGLDIPEVDLVV-----QYHLPQDPESYVHRSGRTGRAGRTGTAIVM 348

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK----EKIMEVIDPILLEDAATT 744
           Y D   + ++        R   Q    ++    P+ V+        +++  +    AAT 
Sbjct: 349 YGDRENRELRNL----EYRTGVQ--FKERPLPTPKEVQAASARASADLVRKVDSGVAATF 402

Query: 745 NISIDAQQLSLSKKKGKAHLKS 766
               +     L  +     L  
Sbjct: 403 QAEAERLFSELGLEALARALAK 424


>gi|254286694|ref|ZP_04961649.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
 gi|150423278|gb|EDN15224.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
          Length = 464

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 15/190 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +G++   VE  + P       VE  I  A   V+   D + 
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD--VKKKPDMLV 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++G   ++L+ + TK  A  L  YL E+ +    +H       R   + D + G+  
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +LV  ++   G+DIP+   V   +  K          +  IGR  R     K I     I
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKI-----AEDYVHRIGRTGRAGEVGKAISLVSAI 350

Query: 694 TKSIQLAIDE 703
                 AI+ 
Sbjct: 351 EAPELFAIER 360


>gi|302307229|ref|NP_983823.2| ADL273Cp [Ashbya gossypii ATCC 10895]
 gi|299788899|gb|AAS51647.2| ADL273Cp [Ashbya gossypii ATCC 10895]
          Length = 623

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 67/167 (40%), Gaps = 10/167 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEINL----A 578
            T++ SAT  +         + + I    G V    E I      VED+     L    A
Sbjct: 339 QTLMFSATFPTDIQHLAADFLKDYIFLSVGRVGSTSENITQKVLHVEDIDKRSVLLDLLA 398

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A  G   L+ V TKRMA+ LT++L  +N+    +H +    ER   +   R G+ +VLV 
Sbjct: 399 ASDGGLTLVFVETKRMADALTDFLIMQNLSATAIHGDRTQAERERALAFFRTGRANVLVA 458

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             +   GLDIP    V   D             +  IGR  R  N+ 
Sbjct: 459 TAVAARGLDIPNVTHVINYD-----LPSDIDDYVHRIGRTGRAGNTG 500


>gi|74694613|sp|Q75B50|DED1_ASHGO RecName: Full=ATP-dependent RNA helicase DED1
          Length = 623

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 67/167 (40%), Gaps = 10/167 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEINL----A 578
            T++ SAT  +         + + I    G V    E I      VED+     L    A
Sbjct: 339 QTLMFSATFPTDIQHLAADFLKDYIFLSVGRVGSTSENITQKVLHVEDIDKRSVLLDLLA 398

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A  G   L+ V TKRMA+ LT++L  +N+    +H +    ER   +   R G+ +VLV 
Sbjct: 399 ASDGGLTLVFVETKRMADALTDFLIMQNLSATAIHGDRTQAERERALAFFRTGRANVLVA 458

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             +   GLDIP    V   D             +  IGR  R  N+ 
Sbjct: 459 TAVAARGLDIPNVTHVINYD-----LPSDIDDYVHRIGRTGRAGNTG 500


>gi|307173398|gb|EFN64357.1| Probable ATP-dependent RNA helicase DDX5 [Camponotus floridanus]
          Length = 639

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 74/187 (39%), Gaps = 21/187 (11%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           L       + QII      +         +++  +  EI    ++  + ++ V TKR  +
Sbjct: 349 LTLSANHNITQIIDVCHEYEK-------DSKLYRLLQEIG--TEKENKTIIFVETKRKVD 399

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           D+T  +     +   +H +    ER  ++++ R G+  +LV  ++   GLD+ +   V  
Sbjct: 400 DITRNIRRDGWQAVSIHGDKNQQERDHVLQEFRSGRAPILVATDVAARGLDVDDVKYVIN 459

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
            D     +  S    I  IGR  R   +    YA   + +++ A D        ++    
Sbjct: 460 FD-----YPSSSEDYIHRIGRTGRRRQTGTA-YAFFTSHNMKHAGD------LIEVLREA 507

Query: 717 KHNINPQ 723
             N+NP+
Sbjct: 508 GQNVNPR 514


>gi|218676540|ref|YP_002395359.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218324808|emb|CAV26511.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 468

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 80/214 (37%), Gaps = 36/214 (16%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           +  T++ SAT              EQ+      L++ P+E++        +   +    +
Sbjct: 232 KKQTLLFSAT------------FPEQVKTLTHELLNDPIEVQLQSANASTLVQRV-FEVE 278

Query: 581 QGLRI---------------LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +G +                L+ V  K   E L + LY+R I     H +     R  I+
Sbjct: 279 KGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRIL 338

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D + G+ DVL+  ++   GLDI +  +V   D       RS +  +  IGR+ R+    
Sbjct: 339 EDFKSGEIDVLIATDIAARGLDIEKLPVVINFD-----LPRSPSDYMHRIGRSGRSGEVG 393

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
           + L            I E  ++ + +LE  +   
Sbjct: 394 LALSLIDHEDYHHFTIIE--KKNKIRLEREQIEG 425


>gi|149038677|gb|EDL92966.1| rCG22008, isoform CRA_c [Rattus norvegicus]
          Length = 638

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 96/254 (37%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W         +     V+ I + T      VE  + +    +    + 
Sbjct: 221 PQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIG 280

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++    +    + +H ++   +R   ++  R G 
Sbjct: 281 DVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFRNGN 339

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 340 FGVLVATNVAARGLDIPEVDLVVQSCPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 394

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QLA          Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 395 HKEEYQLA----------QVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 442

Query: 753 LSLSKKKGKAHLKS 766
           +   K+  +  ++ 
Sbjct: 443 IGHFKQSAEKLIEE 456


>gi|115486155|ref|NP_001068221.1| Os11g0599500 [Oryza sativa Japonica Group]
 gi|122206897|sp|Q2R1M8|RH52C_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52C
 gi|77551918|gb|ABA94715.1| DEAD-box protein 3, X-chromosomal, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113645443|dbj|BAF28584.1| Os11g0599500 [Oryza sativa Japonica Group]
          Length = 623

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 69/196 (35%), Gaps = 20/196 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYD 573
              T++ SAT    E+++     +E  I          T L+   VE      +   + D
Sbjct: 344 ARQTMLFSAT-FPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKRSHLMD 402

Query: 574 EINLAAQ-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            ++         +    L+ V TKR A+ L  +L         +H +    ER   +R  
Sbjct: 403 LLHAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQEREYALRSF 462

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           + G   +LV  ++   GLDIP    V   D             +  IGR  R   S    
Sbjct: 463 KSGHTPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKSGLAT 517

Query: 688 LYADTITKSIQLAIDE 703
            + +    S+  ++ E
Sbjct: 518 AFFNENNSSMARSLAE 533


>gi|15230945|ref|NP_188610.1| eukaryotic translation initiation factor 4A, putative / eIF-4A,
           putative / DEAD box RNA helicase, putative [Arabidopsis
           thaliana]
 gi|109893655|sp|Q94A52|RH2_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 2
 gi|332642762|gb|AEE76283.1| DEAD-box ATP-dependent RNA helicase 2 [Arabidopsis thaliana]
          Length = 408

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
              +VSAT     LE     + E +        +   G+    V +     + +   D+Y
Sbjct: 210 QVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLY 269

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + L+E +   N  V  MH ++   ER  I+ + R G 
Sbjct: 270 DTLTIT-----QAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGD 324

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +  
Sbjct: 325 SRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVK 379

Query: 692 TITKSIQLAIDE 703
           +    I   I++
Sbjct: 380 SDDIKILRDIEQ 391


>gi|223997764|ref|XP_002288555.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975663|gb|EED93991.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 369

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 21/184 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              ++VSAT     LE  +  + + I        +   G+    V +     + +   D+
Sbjct: 170 TQVVLVSATLPVEVLEMTRKFMNDPIRILVKRDELTLEGIKQFFVSVEKEEWKFDTLCDL 229

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TK+  + L   + E N  V  MH ++   ER +++ D R G
Sbjct: 230 YDTLTVT-----QAVIFCNTKQKVDWLATKMRESNFTVAAMHGDMTQDERDKVMEDFRSG 284

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
              VL+  +L   G+D+ +  LV   D        ++   I  IGR+ R     V +   
Sbjct: 285 SSRVLIATDLWGRGIDVQQVSLVICYD-----LPTNRELYIHRIGRSGRFGRKGVAINFV 339

Query: 692 TITK 695
               
Sbjct: 340 RTED 343


>gi|168052555|ref|XP_001778715.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669930|gb|EDQ56508.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 579

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 20/194 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT    E+++     +   I          T L+   VE      +   + D I
Sbjct: 319 QTMLFSAT-FPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVQDADKRSMLMDLI 377

Query: 576 NLAAQ-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  +      Q    L+ V TK+ A+ L ++L         +H +    ER   +R  R 
Sbjct: 378 HAQSALAPPGQQTLTLVFVETKKGADSLEDWLCRMGFPATTIHGDRSQQEREHALRSFRT 437

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-Y 689
           G   +LV  ++   GLDIP    V   D             +  IGR  R   S V   +
Sbjct: 438 GVTPILVATDVAARGLDIPHVAHVVNFD-----LPSDIDDYVHRIGRTGRAGKSGVATAF 492

Query: 690 ADTITKSIQLAIDE 703
            +   +S+   + E
Sbjct: 493 FNEKDQSLARPLSE 506


>gi|324505559|gb|ADY42388.1| ATP-dependent RNA helicase DDX3X [Ascaris suum]
          Length = 788

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKR A DL  YL +    V  +H ++K  ER + +   R G   +LV   +   
Sbjct: 555 TLVFVETKRGASDLAYYLQKDGYNVVAIHGDLKQFEREKHLETFRSGVAPILVATAVAAR 614

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLDIP    V   D             +  IGR  R  N      + +   ++I   + E
Sbjct: 615 GLDIPNVKHVINYD-----LPSDIDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARDLAE 669


>gi|297841061|ref|XP_002888412.1| hypothetical protein ARALYDRAFT_315588 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334253|gb|EFH64671.1| hypothetical protein ARALYDRAFT_315588 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 587

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 84/236 (35%), Gaps = 23/236 (9%)

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542
           +             L + GF      D+    F+ +   R  T++ SAT  +      + 
Sbjct: 296 LDACRYLTLDEADRLVDLGFE-----DDIREVFDHFKSQR-QTLLFSATMPTKIQIFARS 349

Query: 543 IIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
            +V+ +    G      +D   E+   + Q   +   +    +    +L+    K   +D
Sbjct: 350 ALVKPVTVNVGRAGAANLDVIQEVEYVK-QEAKIVYLLECLQKTSPPVLIFCENKADVDD 408

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           + EYL  + +    +H      +R   I   + GK DVLV  ++  +GLD P+   V   
Sbjct: 409 IHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 468

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS------IQLAIDETTRR 707
           D   E       + +  IGR  R   + +        +S      ++  + E  +R
Sbjct: 469 DMPAE-----IENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQR 519


>gi|195115577|ref|XP_002002333.1| GI13281 [Drosophila mojavensis]
 gi|193912908|gb|EDW11775.1| GI13281 [Drosophila mojavensis]
          Length = 649

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 34/255 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ + + +  +++   +                + + GF        R +   
Sbjct: 365 TPGRLLDFV-DRTFITFNDTRFVV----------LDEADRMLDMGF----SDSMRKIMHH 409

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQ 567
           +       T++ SAT    E+++  G  +   +  T          +     E+     +
Sbjct: 410 QTMRAEHQTLMFSAT-FPEEIQRMAGEFLRNYVFVTIGVVGGACSDVQQTIYEVNKFNKR 468

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            +    EI      G   ++ V TKR A+ L  +  E       +H +    +R + +RD
Sbjct: 469 SK--LMEILREGADG--TIVFVETKRAADFLASFFSETEFPTTSIHGDRLQSQREQALRD 524

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + G   VL+  ++   GLDI     V   D        +    +  IGR  R  NS   
Sbjct: 525 FKNGTMKVLIATSVASRGLDIKNVKHVINYD-----MPSNIDDYVHRIGRTGRVGNSGRA 579

Query: 688 LYADTITKSIQLAID 702
                  +   +A D
Sbjct: 580 TSFFDPDQDRAIAGD 594


>gi|19113775|ref|NP_592863.1| ATP-dependent RNA helicase, eIF4A related (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1352438|sp|Q10055|FAL1_SCHPO RecName: Full=ATP-dependent RNA helicase fal1
 gi|1103737|emb|CAA92238.1| ATP-dependent RNA helicase, eIF4A related (predicted)
           [Schizosaccharomyces pombe]
          Length = 394

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 22/193 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              +VVSAT     LE         +        +   GL    + +     + +   D+
Sbjct: 195 TQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDL 254

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   ++R  + LTE + E N  V  MH E+   ER  I++D R G
Sbjct: 255 YDTLTIT-----QAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQG 309

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
              VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V I + 
Sbjct: 310 NSRVLICTDIWARGIDVQQVSLVINYD-----LPANRENYIHRIGRSGRFGRKGVAINFV 364

Query: 691 DTITKSIQLAIDE 703
                 I   I++
Sbjct: 365 TNEDVRILRDIEQ 377


>gi|268575270|ref|XP_002642614.1| C. briggsae CBR-CGH-1 protein [Caenorhabditis briggsae]
 gi|187032079|emb|CAP28848.1| CBR-CGH-1 protein [Caenorhabditis briggsae AF16]
          Length = 429

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 83/241 (34%), Gaps = 35/241 (14%)

Query: 518 WNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           +       ++ SAT                +E+   + + +  + +    V    ++   
Sbjct: 211 FLPKERQIMLYSATFPQTVTTFMQKHMHKPYEINLMEELTLLGVTQYYAFVQEKQKVH-- 268

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
                           Q  + ++   + +  E L + + E      Y+HS++    R  +
Sbjct: 269 -------CLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRV 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
             D R G    LV  +LL  G+DI    +V   D     F R+  + +  IGR+ R  + 
Sbjct: 322 FHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFD-----FPRNAETYLHRIGRSGRFGHL 376

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
            V +   T           T RR E++L    +    P++V  K+      ++     TT
Sbjct: 377 GVAINLITYEDR------HTLRRIEQELRTRIE--PIPKTVDPKLYVADQQLVDAAEDTT 428

Query: 745 N 745
            
Sbjct: 429 A 429


>gi|164657065|ref|XP_001729659.1| hypothetical protein MGL_3203 [Malassezia globosa CBS 7966]
 gi|159103552|gb|EDP42445.1| hypothetical protein MGL_3203 [Malassezia globosa CBS 7966]
          Length = 560

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 83/217 (38%), Gaps = 25/217 (11%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQI 548
                 + + GF         P   +    +RP   T++ SAT    E+++     +   
Sbjct: 288 MDEADRMLDMGFE--------PQIRKIVEQIRPDRQTLMFSAT-WPKEVQRMASDFLNDY 338

Query: 549 IR---------PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
           ++             V   +E+ +   +   +   +   +Q+  ++++   TKR A+DLT
Sbjct: 339 VQVNIGSMELAANHNVKQVIEVCTEFDKRGRLIKHLEHISQENGKVIIFTGTKRAADDLT 398

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           ++L +       +H + +  ER  ++R+ + G   ++V   +   GLD+ +   V   D 
Sbjct: 399 KFLRQDGWPGLAIHGDKQQDERDWVLREFKSGNSPIMVATAVASRGLDVKDISYVINSD- 457

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
               F  +    I  IGR  R     V +   T   S
Sbjct: 458 ----FPTNTEDYIHQIGRTGRAGRKGVAITFFTSENS 490


>gi|170579138|ref|XP_001894695.1| ATP-dependent RNA helicase An3 [Brugia malayi]
 gi|158598597|gb|EDP36460.1| ATP-dependent RNA helicase An3, putative [Brugia malayi]
          Length = 754

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 6/136 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +    ++  A +     L+ V TKR A DL  YL +    V  +H ++K  +R + +   
Sbjct: 537 KSFLMDLLDAGEPSALTLVFVETKRGASDLAYYLQKDGYNVVAIHGDLKQFDREKHLETF 596

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           R G   +LV   +   GLDIP    V   D             +  IGR  R  N     
Sbjct: 597 RSGVATILVATAVAARGLDIPNVKHVINYD-----LPSDIDEYVHRIGRTGRVGNVGLAT 651

Query: 688 LYADTITKSIQLAIDE 703
            + +   ++I   + E
Sbjct: 652 SFFNDKNRNIARDLAE 667


>gi|153825002|ref|ZP_01977669.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
 gi|149741327|gb|EDM55361.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
          Length = 464

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 15/190 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +G++   VE  + P       VE  I  A   V+   D + 
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD--VKKKPDMLV 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++G   ++L+ + TK  A  L  YL E+ +    +H       R   + D + G+  
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +LV  ++   G+DIP+   V   +  K          +  IGR  R     K I     I
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKI-----AEDYVHRIGRTGRAGEVGKAISLVSAI 350

Query: 694 TKSIQLAIDE 703
                 AI+ 
Sbjct: 351 EAPELFAIER 360


>gi|124810293|ref|XP_001348829.1| helicase 45 [Plasmodium falciparum 3D7]
 gi|23497730|gb|AAN37268.1| helicase 45 [Plasmodium falciparum 3D7]
 gi|83272531|gb|ABC00776.1| eIF4A-like [Plasmodium falciparum]
 gi|112434012|gb|ABI18354.1| eIF4A-like [Plasmodium falciparum]
          Length = 398

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 94/252 (37%), Gaps = 28/252 (11%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP--TTIVVS 529
            +D+ H+ + ++      +          GF        +   +E +  L P     + S
Sbjct: 155 MIDKRHLGVDRLKLFILDEADEM---LSRGF--------KAQIYEVFKKLVPDIQVALFS 203

Query: 530 ATPGSWELEQCQGIIVE---QIIRPT-----GLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           AT     LE     + +    +++       G+    V +     +++ + D        
Sbjct: 204 ATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCDLYETLTIT 263

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             + ++   T++  + LT+ ++ R   V  MH ++   +R  I+R+ R G   VLV  +L
Sbjct: 264 --QSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDL 321

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           L  G+D+ +  LV   D        S  + I  IGR+ R     V +   T     +  +
Sbjct: 322 LARGIDVQQVSLVINYD-----LPASPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKL 376

Query: 702 DETTRRREKQLE 713
            +       Q+E
Sbjct: 377 KKIESYYSTQIE 388


>gi|148359886|ref|YP_001251093.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
 gi|296107936|ref|YP_003619637.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
           Alcoy]
 gi|148281659|gb|ABQ55747.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
 gi|295649838|gb|ADG25685.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
           Alcoy]
          Length = 589

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 89/236 (37%), Gaps = 13/236 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           +    + SAT   + + Q     +       IR        +E R     V    D +  
Sbjct: 180 KKQMALFSAT-MPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIR 238

Query: 578 AAQ-QGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             + +  + +++ V TK   E++ E L +  +R   +H ++    R  II   + G  D+
Sbjct: 239 VLEVEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDI 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLD+     V   D   +       + +  IGR  R   S V IL+     
Sbjct: 299 LVATDVAARGLDVERVTHVINYDMPHDN-----ETYVHRIGRTGRAGRSGVTILFVTPKE 353

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
             +  +I+  TR+R ++++    H I     +  +  +   +  E   +    ++ 
Sbjct: 354 SRLISSIERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEE 409


>gi|134057099|emb|CAK44387.1| unnamed protein product [Aspergillus niger]
          Length = 491

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 85/219 (38%), Gaps = 28/219 (12%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI------- 548
            L   GFR       R L            +VVSAT     L+     + + +       
Sbjct: 178 ELLNRGFREQIYDVYRYLPP------ATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRD 231

Query: 549 -IRPTGLVDPPVEIRSARTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
            +   G+    + +     + +   D+YD + +      + ++   T+R  + LT+ + E
Sbjct: 232 ELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTIT-----QAVIFCNTRRKVDWLTDKMRE 286

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            N  V  MH E+   ER  I++D R G   VL+  ++   G+D+ +  LV   D      
Sbjct: 287 ANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYD-----L 341

Query: 665 LRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
             ++ + I  IGR+ R     V I +  +    I   I+
Sbjct: 342 PTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIE 380


>gi|15241415|ref|NP_199941.1| DEAD-box protein abstrakt, putative [Arabidopsis thaliana]
 gi|75335491|sp|Q9LU46|RH35_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 35
 gi|8843865|dbj|BAA97391.1| DEAD-box protein abstrakt [Arabidopsis thaliana]
 gi|110740861|dbj|BAE98527.1| DEAD-box protein abstrakt [Arabidopsis thaliana]
 gi|332008678|gb|AED96061.1| DEAD-box ATP-dependent RNA helicase 35 [Arabidopsis thaliana]
          Length = 591

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 84/236 (35%), Gaps = 23/236 (9%)

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542
           +             L + GF      D+    F+ +   R  T++ SAT  +      + 
Sbjct: 300 LDACRYLTLDEADRLVDLGFE-----DDIREVFDHFKSQR-QTLLFSATMPTKIQIFARS 353

Query: 543 IIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
            +V+ +    G      +D   E+   + Q   +   +    +    +L+    K   +D
Sbjct: 354 ALVKPVTVNVGRAGAANLDVIQEVEYVK-QEAKIVYLLECLQKTSPPVLIFCENKADVDD 412

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           + EYL  + +    +H      +R   I   + GK DVLV  ++  +GLD P+   V   
Sbjct: 413 IHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 472

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS------IQLAIDETTRR 707
           D   E       + +  IGR  R   + +        +S      ++  + E  +R
Sbjct: 473 DMPAE-----IENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQR 523


>gi|254228105|ref|ZP_04921535.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262395917|ref|YP_003287770.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
 gi|151939601|gb|EDN58429.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262339511|gb|ACY53305.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
          Length = 522

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 92/262 (35%), Gaps = 33/262 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   ++++           Q+  +   +  R     + GF      D R  +  
Sbjct: 130 TPGRLMDLYNQNAV--------KFDQLEVLVLDEADRM---LDMGFI----RDIR--KIL 172

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
                +   ++ SAT      +  +G++   VE  + P       VE       V+    
Sbjct: 173 ALLPKQRQNLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAP 232

Query: 574 EINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +    + G   ++L+   TK  A  L ++L E+N+    +H       R + + D + G
Sbjct: 233 MLVKLIKDGDWKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSG 292

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYA 690
           +  VLV  ++   G+DIP+   V   +  K          +  IGR  R     K I   
Sbjct: 293 EIRVLVATDIAARGIDIPQLPQVVNFELPKV-----AEDYVHRIGRTGRAGEVGKAISLV 347

Query: 691 DTITKSIQLAIDETTRRREKQL 712
             +  S   AI+     R  Q 
Sbjct: 348 CALEASELFAIE-----RLIQE 364


>gi|323448910|gb|EGB04803.1| hypothetical protein AURANDRAFT_59462 [Aureococcus anophagefferens]
          Length = 469

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 17/191 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIR----SARTQVEDVYD 573
              T + SAT    E++   G  ++  I  T    G     V  R      R + + +  
Sbjct: 205 ARQTFMFSAT-FPREMQILAGDFLDNYIFLTVGRVGSACKDVTQRFQFVDGRDKPDALMR 263

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I+   + GL  L+ V TKR A+ L + L         +H +    +R   +R+ + G+ 
Sbjct: 264 YISSLEESGL-TLIFVETKRDADYLEDTLCREGFPASSIHGDKTQRDRELALREFKSGRT 322

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL--YAD 691
            +LVG ++   GLDIP    V   D       R+ +  +  IGR  R  N+   +    D
Sbjct: 323 PILVGTDVAARGLDIPNVLHVVNFD-----LPRAVSDYVHRIGRTGRAGNTGYAMSFLCD 377

Query: 692 TITKSIQLAID 702
                ++  ID
Sbjct: 378 KNRNIVRELID 388


>gi|62185446|ref|YP_220231.1| putative transcription-repair coupling factor [Chlamydophila
           abortus S26/3]
 gi|62148513|emb|CAH64284.1| putative transcription-repair coupling factor [Chlamydophila
           abortus S26/3]
          Length = 1085

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 82/225 (36%), Gaps = 15/225 (6%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            +L  I +     L+  +    ++F  AK+    +   +++   +     L+ +  +F  
Sbjct: 13  SILSEITNTSVPLLIENILPGARSFLAAKLFHERKESVVMIT-TRSRIDDLFEDLASFLG 71

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
              VE+  S  D       +   D   +++  + +   +          +     V +  
Sbjct: 72  FPPVEFPSSEIDLSPKLVNI---DAVGKRDKILYDLYQK----------KAPIFCVTTLK 118

Query: 279 SCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI 338
           + +    S +  +   + +++GD ++   ++       Y+ + +   +G F   G  I+I
Sbjct: 119 ALLEKTRSPKDTAHQHLDIQVGDVLDPDIMIDLCKNLGYRHETLASDKGEFAYRGGIIDI 178

Query: 339 FPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
           FP   ++  +R+  +G  I  I  F P        V  + I   +
Sbjct: 179 FPLSSQE-PFRIEFWGEKIISIRPFNPSDQLSTGKVSQLSISPAT 222



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H ++ + E   I +  +  + ++LV   L+  G+DIP    + +  ADK G       L 
Sbjct: 801 HGQMSSDELASIFQKFKDKETNILVATALIENGIDIPNANTILVDHADKFG----MADLY 856

Query: 673 QTIGRAARNVNSKVILYADTITKSI 697
           Q  GR  R        +  +    +
Sbjct: 857 QMKGRVGRWNRKAYCYFLVSHLDRL 881



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 15/132 (11%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K++R++SE+++    + L +L    +         TP   +    H +++  F+    Y 
Sbjct: 509 KRSRDLSEKSLVLYAEKLLQLEAQRST--------TPAFIYPP--HGEEVIKFEESFPYE 558

Query: 149 PSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ  AI Q+    +  +   +L+ G  G GKT   M   ++A+   QR  IVM P  
Sbjct: 559 ETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAVCDGQRQVIVMVPTT 618

Query: 204 ILAAQLYSEFKN 215
           ILA Q Y  F  
Sbjct: 619 ILANQHYETFTQ 630


>gi|330929272|ref|XP_003302577.1| hypothetical protein PTT_14452 [Pyrenophora teres f. teres 0-1]
 gi|311321983|gb|EFQ89342.1| hypothetical protein PTT_14452 [Pyrenophora teres f. teres 0-1]
          Length = 599

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ L+++L  +      +H +    ER + +   R G+  +LV   +   
Sbjct: 459 TLVFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRNGRCPILVATAVAAR 518

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 519 GLDIPHVKHVVNYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 557


>gi|281357501|ref|ZP_06243989.1| transcription-repair coupling factor [Victivallis vadensis ATCC
           BAA-548]
 gi|281316104|gb|EFB00130.1| transcription-repair coupling factor [Victivallis vadensis ATCC
           BAA-548]
          Length = 1098

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 82/230 (35%), Gaps = 18/230 (7%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           P I   P   LA +  +E + F             +   P   +   +    K      +
Sbjct: 52  PLIAAFPELNLAERAVAELEEF-----------RQELDLPLRLLVIPEAGRGKLLFPGGE 100

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGS-VESYSQMIVQLKIGDSVEQKELLSSLV 313
             R R  A  + L     +VV SV  +       E+  +  + LK G  +   ELL  LV
Sbjct: 101 SRRAR--ALNAALTGEFDLVVGSVHALLAPAPAPETTVEAQLTLKAGMELPMAELLEKLV 158

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR 372
           +  Y  +    + G F   G  I+IF P+H  D   RV  FG+ I+ +  F P T +   
Sbjct: 159 RLDYDDEYEATVSGEFARRGGIIDIFSPAH--DFPCRVEFFGDTIDSLRSFAPETQRSTG 216

Query: 373 NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRL 422
            VE  ++   +         +    Y  EE   RL+ L         +R 
Sbjct: 217 AVEEYRVIGRAGITAGGAADSDLFAYF-EERDYRLLTLYPSTARERIERY 265



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 9/169 (5%)

Query: 525 TIVVSATPGS--WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
            + +SATP      L       +  ++       P   + +   +++ V   I     +G
Sbjct: 712 VLTMSATPIPRTLYLAMAGARDLSTLMTAPKQRLPVKTVIAPEDEMQ-VAQAIRAELARG 770

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++       R  E+  + L       ++   H ++   E   I+     GK D LV   
Sbjct: 771 GQVYYLYNRVRTIEEKADKLRALVPEAKFAVAHGQMNEHELEAIMTSFLEGKIDCLVCST 830

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           ++  GLD+P    + I  AD+ G       L Q  GR  R  +      
Sbjct: 831 IIESGLDVPNANTIIIERADRFGLAE----LYQLRGRVGRWTHQAYAYM 875


>gi|91206662|sp|Q4WEB4|FAL1_ASPFU RecName: Full=ATP-dependent RNA helicase fal1
          Length = 398

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 85/219 (38%), Gaps = 28/219 (12%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI------- 548
            L   GFR       R L            +VVSAT     L+     + + +       
Sbjct: 177 ELLNRGFREQIYDVYRYLPP------ATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRD 230

Query: 549 -IRPTGLVDPPVEIRSARTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
            +   G+    + +     + +   D+YD + +      + ++   T+R  + LT+ + E
Sbjct: 231 ELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTIT-----QAVIFCNTRRKVDWLTDKMRE 285

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            N  V  MH E+   ER  I++D R G   VL+  ++   G+D+ +  LV   D      
Sbjct: 286 ANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYD-----L 340

Query: 665 LRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
             ++ + I  IGR+ R     V I +  +    I   I+
Sbjct: 341 PTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIE 379


>gi|254425384|ref|ZP_05039102.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
 gi|196192873|gb|EDX87837.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
          Length = 570

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 8/186 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK    +L+E L  R      +  +V   +R   +  LR GK D+LV  ++   
Sbjct: 248 MIVFVRTKVATVELSEKLEARGYNTAPLSGDVPQNQRERTVERLRQGKLDILVATDVAAR 307

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           + +  IGR  R       IL+     K +  +I+ 
Sbjct: 308 GLDVERISHVINYD-----MPYDPEAYVHRIGRTGRAGREGEAILFVTPREKRLLSSIER 362

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA--TTNISIDAQQLSLSKKKGK 761
           +TR+R +++E      +N Q ++    ++ + +  ED+A  T  +    Q+  +   +  
Sbjct: 363 STRQRIERMEMPSTEVVNDQRIERFKQKITNALAQEDSAFFTQILEQYEQEHDVPAIEIA 422

Query: 762 AHLKSL 767
             L  L
Sbjct: 423 GALAKL 428


>gi|153829646|ref|ZP_01982313.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
 gi|148874874|gb|EDL73009.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
          Length = 464

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 15/190 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +G++   VE  + P       VE  I  A   V+   D + 
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD--VKKKPDMLV 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++G   ++L+ + TK  A  L  YL E+ +    +H       R   + D + G+  
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +LV  ++   G+DIP+   V   +  K          +  IGR  R     K I     I
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKI-----AEDYVHRIGRTGRAGEVGKAISLVSAI 350

Query: 694 TKSIQLAIDE 703
                 AI+ 
Sbjct: 351 EAPELFAIER 360


>gi|134113286|ref|XP_774667.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257311|gb|EAL20020.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 559

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 86/209 (41%), Gaps = 22/209 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR-PTGLVDPP--------VEIRSARTQVEDVYDE 574
            T++ SAT    E+++     +   I+   G +D          VE+ +   +   +   
Sbjct: 309 QTLLFSAT-WPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSH 367

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +   +Q+  ++L+ V TKR+A+DLT++L         +H + +  ER  ++ + + G+  
Sbjct: 368 LEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSP 427

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +++  ++   GLD+ + G V   D     F  +    I  IGR  R           T+ 
Sbjct: 428 IMLATDVASRGLDVRDIGYVINYD-----FPNNCEDYIHRIGRTGRAGRKGTSYTYFTMD 482

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            S          R   Q+    K +I P+
Sbjct: 483 NS-------KAARELVQILRESKADIPPE 504


>gi|134113284|ref|XP_774668.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257312|gb|EAL20021.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 546

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 86/209 (41%), Gaps = 22/209 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR-PTGLVDPP--------VEIRSARTQVEDVYDE 574
            T++ SAT    E+++     +   I+   G +D          VE+ +   +   +   
Sbjct: 296 QTLLFSAT-WPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSH 354

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +   +Q+  ++L+ V TKR+A+DLT++L         +H + +  ER  ++ + + G+  
Sbjct: 355 LEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSP 414

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +++  ++   GLD+ + G V   D     F  +    I  IGR  R           T+ 
Sbjct: 415 IMLATDVASRGLDVRDIGYVINYD-----FPNNCEDYIHRIGRTGRAGRKGTSYTYFTMD 469

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            S          R   Q+    K +I P+
Sbjct: 470 NS-------KAARELVQILRESKADIPPE 491


>gi|159117719|ref|XP_001709079.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           ATCC 50803]
 gi|157437194|gb|EDO81405.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           ATCC 50803]
          Length = 391

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 21/189 (11%)

Query: 524 TTIVVSATPGSWELEQCQGI--------IVEQIIRPTGLVDPPVEIRSA--RTQVEDVYD 573
             ++VSAT     LE  +          + E  +   G+    VE++ A     VED+Y 
Sbjct: 194 QIVLVSATLPPEILELTRQFMRDPVSILVKEAELTLDGIRQYVVELQDAWKTEVVEDIYK 253

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            ++   QQG   ++   +    ++L E L      +  +HSE+   ER +I+ + R G+ 
Sbjct: 254 VLS--VQQG---VIFCNSIGRVKELAEKLKSAGHTLSCIHSELDQAERNKIMGEFRSGQT 308

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
            +L+  N++  G+D+    LV   D  +E       + +  IGR+ R     V I +   
Sbjct: 309 RILIATNIIARGIDVQNVSLVINYDIPRE-----PETYLHRIGRSGRFGRKGVAINFVTD 363

Query: 693 ITKSIQLAI 701
             K    AI
Sbjct: 364 KDKQSMQAI 372


>gi|15600973|ref|NP_232603.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121586756|ref|ZP_01676539.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121727729|ref|ZP_01680817.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|147672261|ref|YP_001215860.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|153816784|ref|ZP_01969451.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|227811827|ref|YP_002811837.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|229506632|ref|ZP_04396141.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286]
 gi|229510570|ref|ZP_04400050.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|229517298|ref|ZP_04406743.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9]
 gi|229605109|ref|YP_002875813.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236]
 gi|254850597|ref|ZP_05239947.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255745988|ref|ZP_05419935.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101]
 gi|262162174|ref|ZP_06031189.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1]
 gi|262167359|ref|ZP_06035068.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27]
 gi|298500057|ref|ZP_07009863.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
 gi|9657596|gb|AAF96116.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549053|gb|EAX59090.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121629946|gb|EAX62356.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|126512587|gb|EAZ75181.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|146314644|gb|ABQ19184.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|227010969|gb|ACP07180.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|227014875|gb|ACP11084.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|229345334|gb|EEO10307.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9]
 gi|229353015|gb|EEO17955.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|229356983|gb|EEO21901.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286]
 gi|229371595|gb|ACQ62017.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236]
 gi|254846302|gb|EET24716.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255735742|gb|EET91140.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101]
 gi|262024243|gb|EEY42935.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27]
 gi|262028249|gb|EEY46907.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1]
 gi|297542038|gb|EFH78089.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
          Length = 451

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 15/190 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +G++   VE  + P       VE  I  A   V+   D + 
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD--VKKKPDMLV 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++G   ++L+ + TK  A  L  YL E+ +    +H       R   + D + G+  
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +LV  ++   G+DIP+   V   +  K          +  IGR  R     K I     I
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKI-----AEDYVHRIGRTGRAGEVGKAISLVSAI 350

Query: 694 TKSIQLAIDE 703
                 AI+ 
Sbjct: 351 EAPELFAIER 360


>gi|270159019|ref|ZP_06187675.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968]
 gi|289166145|ref|YP_003456283.1| ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A)
           [Legionella longbeachae NSW150]
 gi|269987358|gb|EEZ93613.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968]
 gi|288859318|emb|CBJ13253.1| putative ATP-dependent RNA helicase deaD (cold-shock DEAD-box
           protein A) [Legionella longbeachae NSW150]
          Length = 569

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 6/137 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E++ E L ++ +R   +H ++    R  II   R G  D+LV  ++   
Sbjct: 248 VIVFVRTKSSTEEVAEILQQQGLRAMAIHGDITQALRERIIAQFRQGAIDILVATDVAAR 307

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           GLD+     V   D           + +  IGR  R   S V IL+       +  +I+ 
Sbjct: 308 GLDVERVTHVINYD-----LPHDNETYVHRIGRTGRAGRSGVAILFVTPKEGRLITSIER 362

Query: 704 TTRRREKQLEHNKKHNI 720
            TR+R  ++     H I
Sbjct: 363 HTRQRITKVAVPTDHMI 379


>gi|257205736|emb|CAX82519.1| belle [Schistosoma japonicum]
          Length = 939

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 79/229 (34%), Gaps = 28/229 (12%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGF-----RLPSCMDNRPLRFEEWNCLRPTTI 526
            V    V++ QI      +  R     + GF     R+       P         +  T+
Sbjct: 303 MVSRGKVSLEQIRFFVLDEADRM---LDMGFEPQIRRIVEQHGMPP-------AGKRQTL 352

Query: 527 VVSATPGSWELEQCQGIIVEQII-----RPTGLVDPPV-EIRSARTQVE-DVYDEINLAA 579
           + SAT    E++      +   I     R     +  + E+ +   + + D+   +    
Sbjct: 353 MFSAT-FPKEIQTLARDFLHSYIFLAVGRVGSTNENIIQEVLNVADKDKPDMLVRLLQGK 411

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
                 L+ V TKR A+ L ++L + N  V  +H +    ER   ++  R G+  +L+  
Sbjct: 412 DPDGLALVFVETKRGADILAKFLCQLNFPVASIHGDRPQTEREHALQSFRSGRTPILIAT 471

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            +   GLDIP    V   D             +  IGR  R   S    
Sbjct: 472 AVAARGLDIPNVKHVINFD-----LPSDIEEYVHRIGRTGRMGQSGSAT 515


>gi|107103467|ref|ZP_01367385.1| hypothetical protein PaerPA_01004537 [Pseudomonas aeruginosa PACS2]
          Length = 449

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 99/284 (34%), Gaps = 46/284 (16%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +           ++ V   Q+  +   +  R     + GF      +   L   
Sbjct: 131 TPGRLLD--------LYRQNAVKFAQLQALVLDEADRM---LDLGF----ARELDELFAA 175

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
                +  T++ SAT             +  + R        +E+    T  + V   + 
Sbjct: 176 L--PRKRQTLLFSAT---------FSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLV 224

Query: 577 LAAQQG--------------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
              ++                + L+   T++  E+L   L  + I    +H +     R+
Sbjct: 225 PVDKKRKAELFCHLLQANRWHQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARL 284

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             ++  + G+ D+LV  ++   GLDI E  LV   D             I   GRA  + 
Sbjct: 285 RALQRFKAGEVDLLVATDVAARGLDIEEMPLVVNFDLPIV--AEDYVHRIGRTGRAGASG 342

Query: 683 NSKVILYADTIT--KSIQLAIDETTRRREKQLEHNKKHNINPQS 724
            +  ++ AD +    +I+  I +T +RRE + +   +H   PQ+
Sbjct: 343 QAVSLVCADEVELLAAIETLIGQTLQRRE-EPDFEPEHR-VPQT 384


>gi|3775985|emb|CAA09195.1| RNA helicase [Arabidopsis thaliana]
 gi|9294443|dbj|BAB02563.1| RNA helicase [Arabidopsis thaliana]
          Length = 391

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
              +VSAT     LE     + E +        +   G+    V +     + +   D+Y
Sbjct: 193 QVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLY 252

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + L+E +   N  V  MH ++   ER  I+ + R G 
Sbjct: 253 DTLTIT-----QAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGD 307

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +  
Sbjct: 308 SRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVK 362

Query: 692 TITKSIQLAIDE 703
           +    I   I++
Sbjct: 363 SDDIKILRDIEQ 374


>gi|262192111|ref|ZP_06050273.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93]
 gi|262032022|gb|EEY50598.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93]
          Length = 464

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 15/190 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +G++   VE  + P       VE  I  A   V+   D + 
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD--VKKKPDMLV 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++G   ++L+ + TK  A  L  YL E+ +    +H       R   + D + G+  
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +LV  ++   G+DIP+   V   +  K          +  IGR  R     K I     I
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKI-----AEDYVHRIGRTGRAGEVGKAISLVSAI 350

Query: 694 TKSIQLAIDE 703
                 AI+ 
Sbjct: 351 EAPELFAIER 360


>gi|167946342|ref|ZP_02533416.1| excinuclease ABC subunit B [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 77

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/68 (75%), Positives = 56/68 (82%)

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            INLLREGLD+PE  LVAILDADKEGFLRS  +LIQTIGR+ARN N K ILYAD IT S+
Sbjct: 1   VINLLREGLDMPEVSLVAILDADKEGFLRSVGALIQTIGRSARNANGKAILYADEITGSM 60

Query: 698 QLAIDETT 705
           + AIDET 
Sbjct: 61  RRAIDETE 68


>gi|60115445|dbj|BAD90013.1| p68 RNA helicase [Tubifex tubifex]
          Length = 490

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 85/242 (35%), Gaps = 37/242 (15%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIR--- 550
            + + GF         P   +    +RP   T++ SAT    E++Q     +   I+   
Sbjct: 219 RMLDMGFE--------PQIRKILEQVRPDRQTLMWSAT-WPKEVKQLAETFLTDYIQINI 269

Query: 551 ------PTGLVDPPVEI---RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
                     +   V++       +++  +  EI    +   + ++ V TKR A DL   
Sbjct: 270 GSTQLTANHSILQIVDVCSEEEKESKLNRLLQEIM--GESNNKTMVFVETKRRANDLAYK 327

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           +         +H +    ER  ++RD R G+  +LV  ++   GLD+ +   V   D   
Sbjct: 328 MKRAGWMAACIHGDKSQEERDSVLRDFRNGRIPILVATDVAARGLDVDDVKFVVNFD--- 384

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN 721
             +       +  IGR  R  ++       T   +          R   ++       IN
Sbjct: 385 --YPNCSEDYVHRIGRTGRAGHTGTAYTLFTPKNA-------PKARDLIEVLTEANQQIN 435

Query: 722 PQ 723
           P+
Sbjct: 436 PK 437


>gi|24374643|ref|NP_718686.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24349273|gb|AAN56130.1|AE015749_7 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 427

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 108/330 (32%), Gaps = 55/330 (16%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L + +  ++L         + Q+S     +  R  +L   GF   L   +   P  
Sbjct: 142 TPGRLLDLLASNAL--------KLTQVSAFVLDEADRMLSL---GFTEELEQVLAALP-- 188

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT--GLVDPPVEIRSARTQVEDVY 572
                  +  T++ SAT    E+      ++ Q +        +  +E R      E   
Sbjct: 189 ------RQKQTLLFSAT-FPEEVRALTTKLLHQPLEYHLQSEQESTIEQRVITVNREQKT 241

Query: 573 DEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             +    +Q    + L+ V  K     L + L +R I     H +     R  ++   + 
Sbjct: 242 ALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKN 301

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+  VL+  ++   G+DI +  +V   D       RS    +  IGR+ R   + + +  
Sbjct: 302 GEISVLIATDIAARGIDIDKLPVVINFD-----LPRSPADYMHRIGRSGRAGEAGLAVTL 356

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
            +  +     + E            KK+ I      + + E I            +    
Sbjct: 357 ISHEEYHHFGVIE------------KKNKI------KLVREQIPGFEANAEIPLEVLAQE 398

Query: 751 QQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
           +  +  +  GK   K L       A N+ F
Sbjct: 399 KPQAKPEGTGKKKRKQL------PAANVEF 422


>gi|269104706|ref|ZP_06157402.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161346|gb|EEZ39843.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 647

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 80/202 (39%), Gaps = 26/202 (12%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVEHIKRGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAIDET 704
           LD+P    V   D   +       S I  IGR  R     K IL   T    +   I+  
Sbjct: 309 LDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGREGKAILLVRTNQIRMLRTIERV 363

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
           T+ R ++++                + + D +           ++AQ+   S +     +
Sbjct: 364 TKSRMEEIQ----------------LPLRDAVAEARLNRLAKELEAQKEQSSVEAFVELV 407

Query: 765 KSLRKQMHLAADNLNFEEAARI 786
           + L++ + + A  L    AA +
Sbjct: 408 EKLQESIEVDAATL----AAML 425


>gi|168015786|ref|XP_001760431.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688445|gb|EDQ74822.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 675

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 16/190 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           R  T++ +AT      +    +++  +    G  D     +S    VE V         +
Sbjct: 332 RRQTLMYTATWPKEVRKIAGDLLINPVQVNIGNTDELSANKSITQHVEVVVPYEKQRRLE 391

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  + + G +I++   TKRM + L+  L  R+     +H +    ER  ++   R G+ 
Sbjct: 392 QILRSQEPGSKIIVFCSTKRMCDMLSRNLG-RDFGAAAIHGDKSQSERDFVLSQFRTGRT 450

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL--YAD 691
            +LV  ++   GLDI +   V   D     F       +  IGR  R   + +    +++
Sbjct: 451 PILVATDVAARGLDIKDIRFVVNYD-----FPTGVEDYVHRIGRTGRAGATGLAYTFFSE 505

Query: 692 TITKSIQLAI 701
              K  +  I
Sbjct: 506 QDGKYAKELI 515


>gi|115840564|ref|XP_785431.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 48
           [Strongylocentrotus purpuratus]
          Length = 360

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               ++ SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 160 ATQVVLFSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 219

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 220 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKEREAIMKEFRS 274

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 275 GASRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 329

Query: 690 ADTITKSIQLAIDE 703
             +    I   I++
Sbjct: 330 VKSDDIRILRDIEQ 343


>gi|28900245|ref|NP_799900.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837460|ref|ZP_01990127.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260361632|ref|ZP_05774659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260880805|ref|ZP_05893160.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260896485|ref|ZP_05904981.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|260899501|ref|ZP_05907896.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|28808556|dbj|BAC61733.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749260|gb|EDM60045.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308089237|gb|EFO38932.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308092075|gb|EFO41770.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308109261|gb|EFO46801.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|308112745|gb|EFO50285.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 522

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 92/262 (35%), Gaps = 33/262 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   ++++           Q+  +   +  R     + GF      D R  +  
Sbjct: 130 TPGRLMDLYNQNAV--------KFDQLEVLVLDEADRM---LDMGFI----RDIR--KIL 172

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
                +   ++ SAT      +  +G++   VE  + P       VE       V+    
Sbjct: 173 ALLPKQRQNLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAP 232

Query: 574 EINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +    + G   ++L+   TK  A  L ++L E+N+    +H       R + + D + G
Sbjct: 233 MLVKLIKDGDWKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSG 292

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYA 690
           +  VLV  ++   G+DIP+   V   +  K          +  IGR  R     K I   
Sbjct: 293 EIRVLVATDIAARGIDIPQLPQVVNFELPKV-----AEDYVHRIGRTGRAGEVGKAISLV 347

Query: 691 DTITKSIQLAIDETTRRREKQL 712
             +  S   AI+     R  Q 
Sbjct: 348 CALEASELFAIE-----RLIQE 364


>gi|110633776|ref|YP_673984.1| DEAD/DEAH box helicase-like [Mesorhizobium sp. BNC1]
 gi|110284760|gb|ABG62819.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1]
          Length = 460

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 86/252 (34%), Gaps = 38/252 (15%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            V +  V + + + +   +  R     + GF       N   R  +       T + SAT
Sbjct: 163 LVRDGAVVLSETTWLVLDEADRM---LDMGFI------NDVRRIAKATHPARQTALFSAT 213

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR------- 584
               E+E     ++++ +R        +E+    T   ++   + +A  +  R       
Sbjct: 214 -MPREIEALASSLLKEPVR--------IEVSPQGTTAAEIRQSVIMARTKQKRKLLSEML 264

Query: 585 -------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                  +++   TK  A+ +T+ L     +   +H       R   + D R G   +LV
Sbjct: 265 ADEKMAQVIIFSRTKHGADRVTKDLQHDGFQAAVIHGNKSQNARQRALNDFREGAVRILV 324

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   G+D+P    V   D   E       S +  IGR  RN      I   D    S
Sbjct: 325 ATDIAARGIDVPGISHVVNFDLPDE-----AESYVHRIGRTGRNGAEGEAITLCDPGEVS 379

Query: 697 IQLAIDETTRRR 708
               ++   R R
Sbjct: 380 KLRQVERVIRNR 391


>gi|224096586|ref|XP_002310663.1| predicted protein [Populus trichocarpa]
 gi|222853566|gb|EEE91113.1| predicted protein [Populus trichocarpa]
          Length = 407

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             +++SAT  +  LE     + + +        +   G+    V +     + E   D+Y
Sbjct: 209 QVVLISATLPNEILEITSKFMTDPVKILVKRDELTLEGIKQFFVAVEKEEWKFETLTDLY 268

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + LT  + E N  V  MH ++   ER  I+ + RLG+
Sbjct: 269 DTLTIT-----QAVIFCNTKRKVDWLTAKMVEFNFTVSAMHGDMPQRERDAIMSNFRLGE 323

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I +  
Sbjct: 324 TRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVK 378

Query: 692 TITKSIQLAIDE 703
           +    I   I++
Sbjct: 379 SDDIRILRDIEQ 390


>gi|193632062|ref|XP_001950933.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like
           [Acyrthosiphon pisum]
          Length = 528

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 75/197 (38%), Gaps = 32/197 (16%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++GL   +L+ + +K  A++L   L    I V  +H++    +R   ++  R GK
Sbjct: 291 MRDLVKKGLSPPVLIFLQSKERAKELFSELIYDGINVDAIHADRTQQQRDNTVKAFREGK 350

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   L+  G+D     LV   D     F  S  S I  IGR  R   S K + +  
Sbjct: 351 IWVLICTELMGRGIDFKGVNLVVNYD-----FPSSAISYIHRIGRTGRAGRSGKAVTFFT 405

Query: 692 TITKSIQLAIDE----------------------TTRRREKQ-LEHNKKHNINPQSVKEK 728
              K +  +I                        T R+ EKQ ++ N+     P    + 
Sbjct: 406 NDDKPMLRSIATVMRDSGCPVPDYMLEMKRLHKNTRRKLEKQSIDRNEI-RAKPHRYHKP 464

Query: 729 IMEVIDPILLEDAATTN 745
             ++ DP   +    +N
Sbjct: 465 NADIKDPASSKSKKESN 481


>gi|67613960|ref|XP_667337.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           hominis TU502]
 gi|126643927|ref|XP_001388148.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           parvum Iowa II]
 gi|10720033|sp|O02494|IF4A_CRYPV RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
 gi|2150025|gb|AAB58726.1| translation initiation factor [Cryptosporidium parvum]
 gi|2155304|gb|AAB58799.1| translation initiation factor [Cryptosporidium parvum]
 gi|54658467|gb|EAL37111.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           hominis]
 gi|126117225|gb|EAZ51325.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           parvum Iowa II]
 gi|323508859|dbj|BAJ77322.1| cgd1_880 [Cryptosporidium parvum]
 gi|323510549|dbj|BAJ78168.1| cgd1_880 [Cryptosporidium parvum]
          Length = 405

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   T+R  + LT+ + ER+     MH ++   +R  I+R  R G   VL+  +LL 
Sbjct: 272 QAIIYCNTRRRVDQLTKQMRERDFTCSSMHGDMDQKDREVIMRQFRSGSSRVLITTDLLA 331

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            G+D+ +  LV   D        S  + I  IGR+ R     V +   T      + + +
Sbjct: 332 RGIDVQQVSLVINYD-----LPVSPETYIHRIGRSGRFGKKGVSINFVTDDD--IVCLRD 384

Query: 704 TTRRREKQLE 713
             R    Q+E
Sbjct: 385 IERHYNTQIE 394


>gi|313225950|emb|CBY21093.1| unnamed protein product [Oikopleura dioica]
          Length = 485

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 16/185 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT    E+++     ++   +   + +  +       QV +V  + + A +   
Sbjct: 235 QTLMFSAT-WPKEIQKLASDFMKTPTQIF-IGNQELTANPNIEQVVEVVSDFDKAMRFNY 292

Query: 584 --------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   +IL+   TKR  ++L   +    +R   +H +    ER  +++D R G+  V
Sbjct: 293 WFQQITSPKILVFTDTKRDCDNLAYTMSNGRVRCAAIHGDKDQRERERVLKDFRNGQISV 352

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI + G V   D     F       +  IGR AR    K    +    K
Sbjct: 353 LVATDVAARGLDIDDIGTVINYD-----FPSQLEDYVHRIGRTAR-GEKKGKSISFITAK 406

Query: 696 SIQLA 700
           S + A
Sbjct: 407 SAKHA 411


>gi|302911254|ref|XP_003050452.1| hypothetical protein NECHADRAFT_71876 [Nectria haematococca mpVI
           77-13-4]
 gi|256731389|gb|EEU44739.1| hypothetical protein NECHADRAFT_71876 [Nectria haematococca mpVI
           77-13-4]
          Length = 688

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 69/188 (36%), Gaps = 13/188 (6%)

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           G  +PS  D + L F          +          L+    + V ++   +  +   VE
Sbjct: 383 GEDMPSTQDRQTLMFSATFPRDIQMLARDF------LKDYVFLSVGRVGSTSENITQKVE 436

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
                 +   + D ++     G   L+ V TKRMA+ L+++L  +N     +H +    E
Sbjct: 437 YVEDVDKRSVLLDILH--THAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRE 494

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R   +   R G+  +LV   +   GLDIP    V   D             +  IGR  R
Sbjct: 495 RERALEFFRNGRCPILVATAVAARGLDIPNVTHVINYD-----LPTDIDDYVHRIGRTGR 549

Query: 681 NVNSKVIL 688
             N+ +  
Sbjct: 550 AGNTGIAT 557


>gi|168017610|ref|XP_001761340.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687346|gb|EDQ73729.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 589

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 20/194 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT    E+++     +   I          T L+   VE      +   + D I
Sbjct: 330 QTMLFSAT-FPREIQRLASDFLSNYIFLAVGRVGSSTELIVQRVEYVQDSDKRSMLMDLI 388

Query: 576 NLAAQ-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  +      Q    L+ V TK+ A+ L ++L         +H +    ER   +R  R 
Sbjct: 389 HAQSALAPPGQQSLTLVFVETKKGADSLEDWLCRMGFPATTIHGDRSQQEREHALRSFRT 448

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-Y 689
           G   +LV  ++   GLDIP    V   D             +  IGR  R   S V   +
Sbjct: 449 GVTPILVATDVAARGLDIPHVAHVVNFD-----LPSDIDDYVHRIGRTGRAGKSGVATAF 503

Query: 690 ADTITKSIQLAIDE 703
            +   +S+  ++ E
Sbjct: 504 FNEKDQSLARSLAE 517


>gi|154285130|ref|XP_001543360.1| eukaryotic initiation factor 4A-12 [Ajellomyces capsulatus NAm1]
 gi|160385733|sp|A6QSQ0|FAL1_AJECN RecName: Full=ATP-dependent RNA helicase FAL1
 gi|150407001|gb|EDN02542.1| eukaryotic initiation factor 4A-12 [Ajellomyces capsulatus NAm1]
          Length = 450

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 198 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCD 257

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 258 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 312

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 313 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 367

Query: 691 DTITK 695
            T   
Sbjct: 368 VTSED 372


>gi|327542005|gb|EGF28505.1| Transcription-repair-coupling factor [Rhodopirellula baltica WH47]
          Length = 1140

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 78/212 (36%), Gaps = 23/212 (10%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
            GV G  +    A +        +V+ P  + A  +  +  +F   + V   +S  D   
Sbjct: 77  SGVWGGIRGLLAAAL-TRHHPHVLVLLPQAVDADIVAGDVSSFGIEDVVALPLSAGDGTG 135

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND----CIVVSSV--SCIYGIGSV 287
                          SSI +     R    + L  R+      +VV+S   + I  + SV
Sbjct: 136 ---------------SSIRDADYAARLQVLQRLRARDQHSPKPLVVTSYIGAAIQRVPSV 180

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
            S  +   +L +GD V+ + +   L +  +       + G F   G  ++++    +   
Sbjct: 181 SSLEKATRELSVGDIVDPEVIRRWLAEAGFAAVTAVQVPGEFASRGGLLDVYSPD-QPQP 239

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            R+  F ++IE I  F   T +    +  +++
Sbjct: 240 IRIEWFDDEIESIRRFDAATQRSSETLSKVEL 271



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 73/195 (37%), Gaps = 26/195 (13%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + +SATP    L      + +     + L  PP E  +  T+V     + +   I    
Sbjct: 754 VLTLSATPIPRTLHMALVGVRD----ISNLETPPAERMAVETKVTRWDDKMLRSAIVREL 809

Query: 580 QQGLRILLTVLTKRMAEDLTEYLY----ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +G ++          +DL   +     E  I +   H +++     +I+ D    KFD+
Sbjct: 810 NRGGQMYFVHNRIGDMDDLAARIKAIVPELRIGIG--HGQMEEGALEQIMVDFIDHKFDM 867

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+   ++  GLDIP    + I D ++ G     + L Q  GR  R  +        +  K
Sbjct: 868 LLATTIIESGLDIPNANTMFIDDGNRYGL----SDLHQLRGRVGRYKHQAYCYLLVSPNK 923

Query: 696 SIQ-------LAIDE 703
            +         AI+E
Sbjct: 924 RLTPEASKRLRAIEE 938



 Score = 42.0 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 78/233 (33%), Gaps = 20/233 (8%)

Query: 71  NTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWS 130
            T ++ +      IS +    ++ +E  +T     L  L        +  ++  P    +
Sbjct: 538 GTKNRPKLAKIGGISWT--NQKKAAEAAVTDMADELLELQAK-----RATRLGIPMSPDN 590

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKV 188
                 D +F      Y  + DQ +AI  L   + + R   +L+ G  G GKT   M   
Sbjct: 591 EWQRQFDASF-----PYLETPDQLSAIEALKIDMEAPRPMDRLICGDVGFGKTEVAMRAA 645

Query: 189 IEAMQR--PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            +A+       V+ P  +LA Q Y  F+       VE           E      +    
Sbjct: 646 FKAVSSGYQVAVLVPTTVLAEQHYQSFRERMAEFPVEIRKLSRFCTPAEQRETVKEIRRG 705

Query: 247 KESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
           K   +   I   R  A++ +   N  +VV      +G+   E        + +
Sbjct: 706 KADIV---IGTHRV-ASKDVEFNNLGLVVIDEEQRFGVAVKERLKTRHSNVDV 754



 Score = 38.9 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLER 621
            + E        A   G ++ + V T  +AE       E + E  + +R +       E+
Sbjct: 636 GKTEVAMRAAFKAVSSGYQVAVLVPTTVLAEQHYQSFRERMAEFPVEIRKLSRFCTPAEQ 695

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEG 663
            E ++++R GK D+++G + +  + ++    GLV I +  + G
Sbjct: 696 RETVKEIRRGKADIVIGTHRVASKDVEFNNLGLVVIDEEQRFG 738


>gi|307200175|gb|EFN80473.1| ATP-dependent RNA helicase bel [Harpegnathos saltator]
          Length = 611

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           VE    R+ + D+    N A        L+ V TK+ A+ L EYL +    V  +H +  
Sbjct: 455 VEEHDKRSYLLDLLQASNFADSSAESLTLVFVETKKGADMLEEYLAQMGYPVTSIHGDRT 514

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER E +R  R GK  +LV   +   GLDIP    V   D             +  IGR
Sbjct: 515 QREREEALRRFRAGKAPILVATAVAARGLDIPHVKHVINFD-----LPGDVEEYVHRIGR 569

Query: 678 AARNVN 683
             R  N
Sbjct: 570 TGRMGN 575


>gi|258623163|ref|ZP_05718173.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
 gi|258584555|gb|EEW09294.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
          Length = 663

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 262 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 321

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 322 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 376

Query: 698 QLAIDETTR 706
              I+  TR
Sbjct: 377 LRTIERVTR 385


>gi|328866692|gb|EGG15075.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 845

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 63/185 (34%), Gaps = 12/185 (6%)

Query: 524 TTIVVSAT-PGSWELEQCQ-----GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
            T++ SAT P   +            +   +I  T  +   +E      +   + D +  
Sbjct: 567 QTLMFSATFPKPIQNLASDFLDNYIFLKVGVIGTTQNITQRIEYVPDDEKNSTLLDFLET 626

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +     L+ V TKR+ + LT +L  R      +H ++   ER   +   R G    LV
Sbjct: 627 LTKSQALTLIFVETKRLCDSLTVFLNSRGYPTTCIHGDLSQYERESALNSFRSGNTPFLV 686

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GL IP    V   D             +  IGR  R       I + +   K 
Sbjct: 687 ATDVASRGLHIPNVMHVINYD-----LPNDVHVYVHRIGRTGRAGKKGNAISFFNEKNKP 741

Query: 697 IQLAI 701
           I   +
Sbjct: 742 IAQEL 746


>gi|322712791|gb|EFZ04364.1| eukaryotic initiation factor 4A-12 [Metarhizium anisopliae ARSEF
           23]
          Length = 402

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 201 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCD 260

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R 
Sbjct: 261 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQ 315

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 316 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 370

Query: 691 DTITK 695
            T   
Sbjct: 371 VTTED 375


>gi|156099810|ref|XP_001615701.1| RNA helicase-1 [Plasmodium vivax SaI-1]
 gi|5679692|emb|CAB51741.1| RNA helicase-1 [Plasmodium cynomolgi]
 gi|148804575|gb|EDL45974.1| RNA helicase-1, putative [Plasmodium vivax]
          Length = 398

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 94/252 (37%), Gaps = 28/252 (11%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP--TTIVVS 529
            +D+ H+ + ++      +          GF        +   +E +  L P     + S
Sbjct: 155 MIDKRHLGVDRLKLFILDEADEM---LSRGF--------KAQIYEVFKKLVPDIQVALFS 203

Query: 530 ATPGSWELEQCQGIIVE---QIIRPT-----GLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           AT     LE     + +    +++       G+    V +     +++ + D        
Sbjct: 204 ATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCDLYETLTIT 263

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             + ++   T++  + LT+ ++ R   V  MH ++   +R  I+R+ R G   VLV  +L
Sbjct: 264 --QSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDL 321

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           L  G+D+ +  LV   D        S  + I  IGR+ R     V +   T     +  +
Sbjct: 322 LARGIDVQQVSLVINYD-----LPCSPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKL 376

Query: 702 DETTRRREKQLE 713
            +       Q+E
Sbjct: 377 KKIESYYSTQIE 388


>gi|15601559|ref|NP_233190.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121588090|ref|ZP_01677839.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
 gi|121730005|ref|ZP_01682420.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
 gi|153819412|ref|ZP_01972079.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
 gi|153823796|ref|ZP_01976463.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
 gi|227812370|ref|YP_002812380.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
 gi|254849961|ref|ZP_05239311.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
 gi|298499594|ref|ZP_07009400.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
 gi|9658230|gb|AAF96702.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547686|gb|EAX57782.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
 gi|121628252|gb|EAX60768.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
 gi|126510058|gb|EAZ72652.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
 gi|126518684|gb|EAZ75907.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
 gi|227011512|gb|ACP07723.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
 gi|254845666|gb|EET24080.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
 gi|297541575|gb|EFH77626.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
          Length = 663

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 262 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 321

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 322 TDVVARGLDVPRITHVYNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 376

Query: 698 QLAIDETTR 706
              I+  TR
Sbjct: 377 LRTIERVTR 385


>gi|112983588|ref|NP_001037347.1| vasa-like [Bombyx mori]
 gi|1944405|dbj|BAA19572.1| BmVLG [Bombyx mori]
          Length = 601

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 90/231 (38%), Gaps = 18/231 (7%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           FV+ + V+   +  +   +  R     + GF +PS      L        +  T++ SAT
Sbjct: 321 FVERNRVSFGSVRFVVLDEADRM---LDMGF-MPSIEKMM-LHPTMVETTKRQTLMFSAT 375

Query: 532 PGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ--GLRI 585
               +++   G  +   +       G     VE         +  + +    ++  G RI
Sbjct: 376 -FPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQLIEENDGKRI 434

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKR A+ +   L E+ +    +H +    ER E +++ + GK  +LV   +   G
Sbjct: 435 LVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILVATAVAARG 494

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITK 695
           LDI    +V   D  K     S    +  IGR  R  N  K + + D+   
Sbjct: 495 LDIKNVDIVVNYDLPK-----SIDEYVHRIGRTGRVGNRGKAVSFYDSDQD 540


>gi|87310556|ref|ZP_01092685.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
 gi|87286777|gb|EAQ78682.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
          Length = 447

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 84/257 (32%), Gaps = 30/257 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         +D+ +V + Q       +  R     + GF     +     +  
Sbjct: 126 TPGRLLD--------LMDQGYVDLSQAKTFVLDEADRM---LDMGFM--PALKTIVSKLP 172

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIR---SARTQVED 570
                +  TI  +AT      +   G++   +   + P       VE R    ++     
Sbjct: 173 ----KQRQTIFFTATMPPKVAQLASGLLNNPVRIEVAPESTTAERVEQRLMYVSQGDKRA 228

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + +    A   G R L+   TK  A+ L + L    IR   +H      +R   +   R 
Sbjct: 229 LLEHSLQAEGVG-RTLVFTKTKHGADRLAKELNASGIRTDAIHGNKTQNKRNRALESFRS 287

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VLV  ++   G+D+     V   D           S +  IGR  R     + + +
Sbjct: 288 GRLQVLVATDVAARGIDVDGVTHVVNFD-----LPIDPESYVHRIGRTGRAGKEGIALSF 342

Query: 690 ADTITKSIQLAIDETTR 706
            D        AI+   R
Sbjct: 343 CDFSEHGTLRAIERLIR 359


>gi|229514699|ref|ZP_04404160.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21]
 gi|229348679|gb|EEO13637.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21]
          Length = 464

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 15/190 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +G++   VE  + P       VE  I  A   V+   D + 
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD--VKKKPDMLV 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++G   ++L+ + TK  A  L  YL E+ +    +H       R   + D + G+  
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +LV  ++   G+DIP+   V   +  K          +  IGR  R     K I     I
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKI-----AEDYVHRIGRTGRAGEVGKAISLVSAI 350

Query: 694 TKSIQLAIDE 703
                 AI+ 
Sbjct: 351 EAPELFAIER 360


>gi|124491306|gb|ABN12944.1| Lia2p [Tetrahymena thermophila]
          Length = 522

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 99/274 (36%), Gaps = 40/274 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM-------D 509
            P  L +++  ++         T+ +++ +   +  R     + GF +           D
Sbjct: 155 TPGRLIDFLESETT--------TLRRVTYLVLDEADRM---LDMGFEIQIRKILGQIRPD 203

Query: 510 NRPLRFEEWNCLRPTTI---VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
            + L F          +       TP   ++ + +  I E+I          V +     
Sbjct: 204 RQTLMFSATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERI-------KQIVYVTDQSK 256

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           ++  +  +++   Q+  ++L+   TK+  E ++  L +   +   +H +    +R  ++ 
Sbjct: 257 KINQLIKQLDCLTQKD-KVLIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMN 315

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             + G+  +L+  ++   GLD+ +   V   D     F +     + +IGR  R      
Sbjct: 316 KFKSGECRILIATDVASRGLDVKDVSHVFNYD-----FPKVMEDYVHSIGRTGRAGAYGC 370

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
            +   T     +++      R   Q+ H+ K  I
Sbjct: 371 AVSFLTFEDDKKIS------REYVQMLHDAKQEI 398


>gi|153801601|ref|ZP_01956187.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|124122857|gb|EAY41600.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
          Length = 464

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 15/190 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +G++   VE  + P       VE  I  A   V+   D + 
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD--VKKKPDMLV 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++G   ++L+ + TK  A  L  YL E+ +    +H       R   + D + G+  
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +LV  ++   G+DIP+   V   +  K          +  IGR  R     K I     I
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKI-----AEDYVHRIGRTGRAGEVGKAISLVSAI 350

Query: 694 TKSIQLAIDE 703
                 AI+ 
Sbjct: 351 EAPELFAIER 360


>gi|324556807|gb|ADY49814.1| UvrABC system protein B [Ascaris suum]
          Length = 65

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 47/65 (72%)

Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDF 491
           M+   G C  IENY+RY+TG+  GEPP TL ++  +D LL VDESHVT+PQI GMY GD 
Sbjct: 1   MMNELGYCNGIENYTRYMTGKKKGEPPYTLLDFFGDDWLLVVDESHVTLPQIRGMYEGDH 60

Query: 492 HRKAT 496
           +RK T
Sbjct: 61  NRKQT 65


>gi|146197863|dbj|BAF57642.1| nucleolar RNA helicase II/Gu protein [Dugesia japonica]
          Length = 627

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 96/298 (32%), Gaps = 39/298 (13%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT----------GLVDPPVEIRSARTQV 568
           +   P T++ SAT  +W     +  +    I+              V+        R + 
Sbjct: 226 DKKGPQTLLFSATMPNWIHNIVKKYLKPDAIKVCLIDENGSKAASTVEHLAIQCPWRERA 285

Query: 569 EDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
             + D I +       R ++    K+ A++L  +          +H +V   +R  +++ 
Sbjct: 286 GTIPDIIRVHGGGNQARCIIFCERKKDADELASH-SAMKSDCHVLHGDVPQEKRELVLKK 344

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            R GK+ VLV  N+   GLD+P+  LV      K+         I   GR  R     V 
Sbjct: 345 FREGKYSVLVTTNVAARGLDVPDIDLVIQCHPPKDV-----EDYIHRSGRTGRAGRKGVC 399

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           +              E   + + Q           + +       I    L D      S
Sbjct: 400 ICFY-----------EPKEKYDLQKVEKLA-GFTFKRIFPPSAASIIEANLNDTIEAFKS 447

Query: 748 IDAQQLSLSKKKGKAHLKSL--RKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLD 803
           I        K+     ++     K M   A  L     A+I  +++ LK+      ++
Sbjct: 448 IPETVCESFKESAIKLIEQFGAEKAM---ALAL-----AKISGKVEELKNRSLLSSME 497


>gi|254225215|ref|ZP_04918828.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
 gi|125622314|gb|EAZ50635.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
          Length = 464

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 15/190 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +G++   VE  + P       VE  I  A   V+   D + 
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD--VKKKPDMLV 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++G   ++L+ + TK  A  L  YL E+ +    +H       R   + D + G+  
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +LV  ++   G+DIP+   V   +  K          +  IGR  R     K I     I
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKI-----AEDYVHRIGRTGRAGEVGKAISLVSAI 350

Query: 694 TKSIQLAIDE 703
                 AI+ 
Sbjct: 351 EAPELFAIER 360


>gi|322698074|gb|EFY89847.1| eukaryotic initiation factor 4A-12 [Metarhizium acridum CQMa 102]
          Length = 402

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 201 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCD 260

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R 
Sbjct: 261 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQ 315

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 316 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 370

Query: 691 DTITK 695
            T   
Sbjct: 371 VTTED 375


>gi|258624003|ref|ZP_05718956.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
 gi|258583797|gb|EEW08593.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
          Length = 663

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 262 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 321

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 322 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 376

Query: 698 QLAIDETTR 706
              I+  TR
Sbjct: 377 LRTIERVTR 385


>gi|224129414|ref|XP_002328711.1| predicted protein [Populus trichocarpa]
 gi|222839009|gb|EEE77360.1| predicted protein [Populus trichocarpa]
          Length = 587

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 94/260 (36%), Gaps = 28/260 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      D+    F+ +   R  T++ SAT  +      +  +V+ +    G  
Sbjct: 309 RLVDLGFE-----DDIREVFDHFKAQR-QTLLFSATMPTKIQNFARSALVKPVTVNVGRA 362

Query: 555 ----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + Q   +   +    +    +L+    K   +D+ EYL  + +   
Sbjct: 363 GAANLDVIQEVEYVK-QEAKIVYLLECLQKTPPPVLVFCENKADVDDIHEYLLLKGVEAV 421

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER   I   + GK DVLV  ++  +GLD P+   V   D   E       +
Sbjct: 422 AVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE-----IEN 476

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
            +  IGR  R   + +        +S    +D       K L    K  I P      + 
Sbjct: 477 YVHRIGRTGRCGKTGIATTFINKNQSETTLLD------LKHLLQEAKQRIPPV-----LA 525

Query: 731 EVIDPILLEDAATTNISIDA 750
           E+ DP+   D  T+   +  
Sbjct: 526 ELNDPMEDGDTITSASGVKG 545


>gi|195437123|ref|XP_002066494.1| GK18312 [Drosophila willistoni]
 gi|194162579|gb|EDW77480.1| GK18312 [Drosophila willistoni]
          Length = 1424

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 84/259 (32%), Gaps = 42/259 (16%)

Query: 457  PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
             P  L +++ E + +  +++   +                + + GF        R +   
Sbjct: 1143 TPGRLLDFV-ERTFITFEDTRFVV----------LDEADRMLDMGF----SESMRKIITH 1187

Query: 517  EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
                    T++ SAT    E+++  G  +   +         V I        DV   I 
Sbjct: 1188 PTMRKEHQTLMFSAT-FPEEIQRMAGEFLRDYVF--------VTIGVIGGACSDVTQTIY 1238

Query: 577  LAAQQGLR-------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
               +   R              ++ V TKR A+ L  +  E       +H +    +R +
Sbjct: 1239 EVDKFNKRAKLMEILRDGADGTIVFVETKRGADFLASFFSETEFPTTSIHGDRLQSQREQ 1298

Query: 624  IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
             +R+ + GK  VL+  ++   GLDI     V   D        +    +  IGR  R  N
Sbjct: 1299 ALREFKSGKMKVLIATSVASRGLDIKNVSHVINYD-----MPSTIDDYVHRIGRTGRVGN 1353

Query: 684  SKVILYADTITKSIQLAID 702
            +          K   LA D
Sbjct: 1354 NGRATSFFDSDKDRALAGD 1372


>gi|46122961|ref|XP_386034.1| hypothetical protein FG05858.1 [Gibberella zeae PH-1]
 gi|91206664|sp|Q4IAA0|FAL1_GIBZE RecName: Full=ATP-dependent RNA helicase FAL1
          Length = 401

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 200 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCD 259

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R 
Sbjct: 260 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQ 314

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 315 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 369

Query: 691 DTITK 695
            T   
Sbjct: 370 VTTED 374


>gi|319783363|ref|YP_004142839.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169251|gb|ADV12789.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 474

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 83/250 (33%), Gaps = 38/250 (15%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            V E  + +     +   +  R     + GF       N   R  +       T++ SAT
Sbjct: 153 LVREGDLMLADTKWLVLDEGDRM---LDMGFI------NDVKRIAKATAPDRQTVLFSAT 203

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR------- 584
             +   E  +G++   I          VE+    T   ++   +  A  +  R       
Sbjct: 204 MPNEIAELAKGLLKNPI---------RVEVAPQSTAAAEIVQGVVFARTKQKRQVLSTML 254

Query: 585 -------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                  +++   TK  A+ +T+ L     +   +H       R + + D R G   +LV
Sbjct: 255 ADETMKSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFRDGSVRILV 314

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
             ++   G+D+P    V   D   E       S +  IGR  RN  +   I   D    S
Sbjct: 315 ATDIAARGIDVPGISHVVNFDLPDE-----AESYVHRIGRTGRNGMDGIAITLCDPSENS 369

Query: 697 IQLAIDETTR 706
               ++   R
Sbjct: 370 KLRQVERIIR 379


>gi|91224087|ref|ZP_01259350.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01]
 gi|91190998|gb|EAS77264.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01]
          Length = 517

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 92/262 (35%), Gaps = 33/262 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   ++++           Q+  +   +  R     + GF      D R  +  
Sbjct: 130 TPGRLMDLYNQNAV--------KFDQLEVLVLDEADRM---LDMGFI----RDIR--KIL 172

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
                +   ++ SAT      +  +G++   VE  + P       VE       V+    
Sbjct: 173 ALLPKQRQNLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAP 232

Query: 574 EINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +    + G   ++L+   TK  A  L ++L E+N+    +H       R + + D + G
Sbjct: 233 MLVKLIKDGDWKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSG 292

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYA 690
           +  VLV  ++   G+DIP+   V   +  K          +  IGR  R     K I   
Sbjct: 293 EIRVLVATDIAARGIDIPQLPQVVNFELPKV-----AEDYVHRIGRTGRAGEVGKAISLV 347

Query: 691 DTITKSIQLAIDETTRRREKQL 712
             +  S   AI+     R  Q 
Sbjct: 348 CALEASELFAIE-----RLIQE 364


>gi|153832249|ref|ZP_01984916.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
 gi|148871560|gb|EDL70415.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
          Length = 499

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 98/279 (35%), Gaps = 39/279 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   ++++           Q+  +   +  R     + GF      D R  +  
Sbjct: 130 TPGRLLDLYNQNAV--------KFDQLEMLVLDEADRM---LDMGFI----RDIR--KIL 172

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDV 571
           +    +   ++ SAT      +  +G++   VE  + P       VE  I  A   V+  
Sbjct: 173 DLLPKQRQNLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYPAD--VKKK 230

Query: 572 YDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
              +    + G   ++L+   TK  A  L ++L ++ I    +H       R + + D +
Sbjct: 231 APMLVKLIKDGDWKQVLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFK 290

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVIL 688
            G+  VLV  ++   G+DIP+   V   +  K          +  IGR  R     K I 
Sbjct: 291 SGEVRVLVATDIAARGIDIPQLPQVVNFELPKV-----AEDYVHRIGRTGRAGEVGKAIS 345

Query: 689 YADTITKSIQLAIDETTRRREKQLE--HNKKHNINPQSV 725
               +  S   AI+     R  Q      +     P +V
Sbjct: 346 LVCALEASELFAIE-----RLIQQLLPRKELEGYAPTNV 379


>gi|255726050|ref|XP_002547951.1| ATP-dependent RNA helicase ded1 [Candida tropicalis MYA-3404]
 gi|240133875|gb|EER33430.1| ATP-dependent RNA helicase ded1 [Candida tropicalis MYA-3404]
          Length = 665

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 64/171 (37%), Gaps = 12/171 (7%)

Query: 524 TTIVVSAT-PGSWEL---EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
            T++ SAT P   ++   +  +  +   + R  G     +  +    + ED    I    
Sbjct: 380 QTLMFSATFPRDIQMLARDFLKDYVFLSVGR-VGSTSENITQKILYVEDEDKKSVILDLL 438

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                   ++   TKRMA+ L ++LY++      +H +    ER + +   + G   +LV
Sbjct: 439 AANENGLTIVFTETKRMADQLADFLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILV 498

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              +   GLDIP  G V   D             +  IGR  R  N  +  
Sbjct: 499 ATAVAARGLDIPNVGHVINFD-----LPSDIDDYVHRIGRTGRAGNVGIAT 544


>gi|159469622|ref|XP_001692962.1| DEAD box RNA helicase [Chlamydomonas reinhardtii]
 gi|158277764|gb|EDP03531.1| DEAD box RNA helicase [Chlamydomonas reinhardtii]
          Length = 407

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 21/212 (9%)

Query: 509 DNRPLRFEEWNCLRPTTIVVSA-------TPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
           D + L F          + V+        T GS +L     I               +E 
Sbjct: 168 DRQTLMFSATWPTAVQKLAVAFLSHPVKVTIGSQDLAASHSITQHV---------EVIEP 218

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            +   ++ D+  + + A  +  R+++ VL K+ A  + + L  +  +   +H ++   +R
Sbjct: 219 HARDGRLLDLLQQYHGAKGRKNRVIIFVLYKKEAPRVEQLLTRKGWKAGAIHGDISQQQR 278

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + +   + G   +L+  ++   GLDIP+  +V         F  +    +  IGR  R 
Sbjct: 279 TDAVEKFKSGAVPLLIATDVAARGLDIPDVEVVINYS-----FPLTTEDYVHRIGRTGRA 333

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLE 713
             + V             A +     RE   E
Sbjct: 334 GKTGVAYTFFCAGPDKPRAGELINVLREAGQE 365


>gi|239980958|ref|ZP_04703482.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291452821|ref|ZP_06592211.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291355770|gb|EFE82672.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 789

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 84/227 (37%), Gaps = 23/227 (10%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A +  R ++ V T+  A+ + E L E  ++   +H  +    R   + D + G  +VLV 
Sbjct: 308 AARKGRTIIFVRTQLGADRVAEQLRESGVKADALHGGMTQGARTRTLADFKDGHVNVLVA 367

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   G+ +    LV  +D             +   GR AR   S  ++      +   
Sbjct: 368 TDVAARGIHVDGIDLVLNVDP-----AGDHKDYLHRSGRTARAGRSGTVVSLSLPHQ--- 419

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE-DAATTNISIDAQQLSLSK 757
                   RR+      +   ++          V DP + E   A +   + A     S 
Sbjct: 420 --------RRQIFRLM-EDAGVDATRHIVGGSGVFDPEVAEITGARSLTEVQADSADNSA 470

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
           K+ +  +  L +Q+  A        AA +R+E +RL +    +  DD
Sbjct: 471 KQAEREVGDLTRQLERATR-----RAAELREEAERLTARAARERGDD 512


>gi|229526174|ref|ZP_04415578.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis
           VL426]
 gi|229336332|gb|EEO01350.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis
           VL426]
          Length = 464

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 15/190 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +G++   VE  + P       VE  I  A   V+   D + 
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD--VKKKPDMLV 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++G   ++L+ + TK  A  L  YL E+ +    +H       R   + D + G+  
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +LV  ++   G+DIP+   V   +  K          +  IGR  R     K I     I
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKI-----AEDYVHRIGRTGRAGEVGKAISLVSAI 350

Query: 694 TKSIQLAIDE 703
                 AI+ 
Sbjct: 351 EAPELFAIER 360


>gi|182413406|ref|YP_001818472.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177840620|gb|ACB74872.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
          Length = 403

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 88/236 (37%), Gaps = 31/236 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ + +         ++  +  +   +  R     + GF LP   D R +   
Sbjct: 127 TPGRLLDHLGQGNC--------SLEDVEILVLDEVDRM---LDMGF-LP---DVRKIVQR 171

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR-PTGLVDPPVEIRS------ARTQVE 569
                   T+  SAT    ELEQ  G  +    +   G V  P E  S        +Q  
Sbjct: 172 C--PKARQTLFFSAT-LPPELEQLAGWALHNPTKVEIGRVRSPAETVSHGFYPVVASQKF 228

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+   +    +    +L+   T+  A+ +   L  +   V  MHS+    ERIE +   +
Sbjct: 229 DLLQLLLERTEFK-SVLIFCRTRMGADRIAHRLKTKGHTVGVMHSDRSQRERIEALDGFK 287

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            GKF+VLV  ++   GLDI     V   D        +    +  IGR  R  ++ 
Sbjct: 288 SGKFEVLVATDIAARGLDIAGVSHVINYDV-----PENPEDYVHRIGRTGRAHHTG 338


>gi|149240601|ref|XP_001526175.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013500|sp|A5DZE6|DED1_LODEL RecName: Full=ATP-dependent RNA helicase DED1
 gi|146450298|gb|EDK44554.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 664

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TKRMA++L ++LY++      +H +    ER + +   + G+  +LV   +   
Sbjct: 435 TIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGQAPILVATAVAAR 494

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKSIQLAI 701
           GLDIP    V   D             +  IGR  R  N  +   + +   K+I   +
Sbjct: 495 GLDIPNVSHVINYD-----LPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNIVKGM 547


>gi|147671700|ref|YP_001215271.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|153216449|ref|ZP_01950468.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587]
 gi|153802978|ref|ZP_01957564.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3]
 gi|153830498|ref|ZP_01983165.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39]
 gi|254292037|ref|ZP_04962815.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226]
 gi|297580174|ref|ZP_06942101.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385]
 gi|124114251|gb|EAY33071.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587]
 gi|124121501|gb|EAY40244.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3]
 gi|146314083|gb|ABQ18623.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|148874031|gb|EDL72166.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39]
 gi|150422062|gb|EDN14031.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226]
 gi|227015452|gb|ACP11661.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|297535820|gb|EFH74654.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385]
          Length = 663

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 262 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 321

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 322 TDVVARGLDVPRITHVYNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 376

Query: 698 QLAIDETTR 706
              I+  TR
Sbjct: 377 LRTIERVTR 385


>gi|153215146|ref|ZP_01949844.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
 gi|124114870|gb|EAY33690.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
          Length = 464

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 15/190 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +G++   VE  + P       VE  I  A   V+   D + 
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD--VKKKPDMLV 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++G   ++L+ + TK  A  L  YL E+ +    +H       R   + D + G+  
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +LV  ++   G+DIP+   V   +  K          +  IGR  R     K I     I
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKI-----AEDYVHRIGRTGRAGEVGKAISLVSAI 350

Query: 694 TKSIQLAIDE 703
                 AI+ 
Sbjct: 351 EAPELFAIER 360


>gi|109089499|ref|XP_001110939.1| PREDICTED: nucleolar RNA helicase 2-like isoform 3 [Macaca mulatta]
          Length = 783

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVY- 572
           P T++ SAT   W         +     V+ I + T      VE   I+   TQ   V  
Sbjct: 369 PQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIG 428

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++         + +H ++   +R   ++  R G 
Sbjct: 429 DVIRVYSGHQGRTIIFCETKKEAQELSQ-NSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 488 FGVLVATNVAARGLDIPEVDLVIQSSPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 542

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QL           Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 543 HKEEYQL----------VQVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 590

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 591 ISHFKQSAEKLIEE 604


>gi|284042564|ref|YP_003392904.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283946785|gb|ADB49529.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 481

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 11/189 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T + SAT      +  +  +   +   +R   L    VE  S      D  D +     
Sbjct: 177 QTALFSATMPPEIRKLSERYLYNPVHVKVRAATLTVDTVEQFSLEMSQRDKPDMLGTVLE 236

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +++  + ++ V TK   + L   L +R + V+ +H ++   +R  ++   + G+  +LV 
Sbjct: 237 SEKPDQAIVFVRTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPILVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D        S    +  IGR  R   S   I + D+  K  
Sbjct: 297 TDVAARGLDISSVTHVVNFDV-----PTSPDVYVHRIGRTGRVGRSGRAITFYDSKQKRD 351

Query: 698 QLAIDETTR 706
             AI+  TR
Sbjct: 352 IEAIERHTR 360


>gi|269967184|ref|ZP_06181249.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|269828174|gb|EEZ82443.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 522

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 92/262 (35%), Gaps = 33/262 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   ++++           Q+  +   +  R     + GF      D R  +  
Sbjct: 130 TPGRLMDLYNQNAV--------KFDQLEVLVLDEADRM---LDMGFI----RDIR--KIL 172

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
                +   ++ SAT      +  +G++   VE  + P       VE       V+    
Sbjct: 173 ALLPKQRQNLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAP 232

Query: 574 EINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +    + G   ++L+   TK  A  L ++L E+N+    +H       R + + D + G
Sbjct: 233 MLVKLIKDGDWKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSG 292

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYA 690
           +  VLV  ++   G+DIP+   V   +  K          +  IGR  R     K I   
Sbjct: 293 EIRVLVATDIAARGIDIPQLPQVVNFELPKV-----AEDYVHRIGRTGRAGEVGKAISLV 347

Query: 691 DTITKSIQLAIDETTRRREKQL 712
             +  S   AI+     R  Q 
Sbjct: 348 CALEASELFAIE-----RLIQE 364


>gi|261212630|ref|ZP_05926914.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341]
 gi|260837695|gb|EEX64372.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341]
 gi|327485418|gb|AEA79824.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae LMA3894-4]
          Length = 464

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 15/190 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +G++   VE  + P       VE  I  A   V+   D + 
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD--VKKKPDMLV 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++G   ++L+ + TK  A  L  YL E+ +    +H       R   + D + G+  
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +LV  ++   G+DIP+   V   +  K          +  IGR  R     K I     I
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKI-----AEDYVHRIGRTGRAGEVGKAISLVSAI 350

Query: 694 TKSIQLAIDE 703
                 AI+ 
Sbjct: 351 EAPELFAIER 360


>gi|260770312|ref|ZP_05879245.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
 gi|260615650|gb|EEX40836.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
          Length = 632

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 74/193 (38%), Gaps = 26/193 (13%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTRRR--EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
              I+  TR    E QL H                   D +     +   I ++A++   
Sbjct: 357 LRTIERVTRSSMEEIQLPHR------------------DKVAEARLSQLAIELEAEKEHA 398

Query: 756 SKKKGKAHLKSLR 768
           S +K    ++ L+
Sbjct: 399 SLEKFAELVEKLQ 411


>gi|125577677|gb|EAZ18899.1| hypothetical protein OsJ_34439 [Oryza sativa Japonica Group]
          Length = 541

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 69/196 (35%), Gaps = 20/196 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYD 573
              T++ SAT    E+++     +E  I          T L+   VE      +   + D
Sbjct: 262 ARQTMLFSAT-FPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKRSHLMD 320

Query: 574 EINLAAQ-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            ++         +    L+ V TKR A+ L  +L         +H +    ER   +R  
Sbjct: 321 LLHAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQEREYALRSF 380

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           + G   +LV  ++   GLDIP    V   D             +  IGR  R   S    
Sbjct: 381 KSGHTPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKSGLAT 435

Query: 688 LYADTITKSIQLAIDE 703
            + +    S+  ++ E
Sbjct: 436 AFFNENNSSMARSLAE 451


>gi|320583085|gb|EFW97301.1| ATP-dependent RNA helicase DED1 [Pichia angusta DL-1]
          Length = 2471

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 66/176 (37%), Gaps = 18/176 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIR-------SARTQVEDVY 572
            T++ SAT    E++      +   I  +    G     +  R         ++ + D+ 
Sbjct: 329 QTLMFSAT-FPKEIQLMAKDFLHNYIFLSVGRVGSTSENITQRILYVEDDEKKSSLLDIL 387

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                    GL  L+ V TK+MA+ L+++L  ++     +H +    ER   +   R G+
Sbjct: 388 TSTEDTLANGL-TLIFVETKKMADILSDFLINQDFPATSIHGDRSQYERERALESFRTGR 446

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             +LV   +   GLDIP    V   D             +  IGR  R  N+ V  
Sbjct: 447 TPILVATAVAARGLDIPNVTHVVNYD-----LPNDIDDYVHRIGRTGRAGNTGVAT 497


>gi|320170226|gb|EFW47125.1| ATP-dependent RNA helicase dbp2 [Capsaspora owczarzaki ATCC 30864]
          Length = 562

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 8/157 (5%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
             VE      ++      I    Q   + ++   TKR  +DLT  +         +H + 
Sbjct: 300 DVVEDHEKDGKLFTFLASIV--TQPDHKTIIFTETKRGTDDLTRRMRRSGWNAMSIHGDK 357

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
              ER  ++ + + GK D+L+  ++   GLD+ +   V   D     F  +    +  IG
Sbjct: 358 NQSERDWVLAEFKAGKCDILIATDVASRGLDVKDIRFVINYD-----FPNNVEDYVHRIG 412

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           R AR   +    Y          A D     RE + E
Sbjct: 413 RTARAQATGT-SYTLFTRDDAGRARDLVNVLREAEQE 448


>gi|302910116|ref|XP_003050220.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256731157|gb|EEU44507.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 407

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 206 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCD 265

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R 
Sbjct: 266 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQ 320

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 321 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 375

Query: 691 DTITK 695
            T   
Sbjct: 376 VTTED 380


>gi|170057770|ref|XP_001864629.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167877091|gb|EDS40474.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 798

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 8/133 (6%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           VE    R+ + D+   I        +    L+ V TK+ A+ L ++LY  N  V  +H +
Sbjct: 523 VEENDKRSHLLDLLSNIKDQNDGDEKDCLTLIFVETKKSADALEDFLYNYNHPVTSIHGD 582

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
               ER E ++  R G+  VLV   +   GLDIP    V   D   E         +  I
Sbjct: 583 RTQKEREEALKFFRSGRCPVLVATAVAARGLDIPNVKHVINFDLPAEV-----EEYVHRI 637

Query: 676 GRAARNVNSKVIL 688
           GR  R  N     
Sbjct: 638 GRTGRMGNLGTAT 650


>gi|168067781|ref|XP_001785785.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662575|gb|EDQ49411.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 395

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             ++VSAT     LE     + + +        +   G+    V +     + +   D+Y
Sbjct: 197 QVVLVSATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 256

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R G 
Sbjct: 257 DTLTIT-----QAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQKERDAIMAEFRSGT 311

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I +  
Sbjct: 312 TRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVR 366

Query: 692 TITKSIQLAIDE 703
           +    I   I++
Sbjct: 367 SDDIRILRDIEQ 378


>gi|332849248|ref|XP_511724.3| PREDICTED: eukaryotic initiation factor 4A-III [Pan troglodytes]
          Length = 411

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 211 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 270

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 271 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 325

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 326 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELSIHRIGRSGRYGRKGVAINF 380

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 381 VKNDDIRILRDIEQ 394


>gi|229527823|ref|ZP_04417214.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)]
 gi|229334185|gb|EEN99670.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)]
          Length = 464

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 15/190 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +G++   VE  + P       VE  I  A   V+   D + 
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD--VKKKPDMLV 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++G   ++L+ + TK  A  L  YL E+ +    +H       R   + D + G+  
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +LV  ++   G+DIP+   V   +  K          +  IGR  R     K I     I
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKI-----AEDYVHRIGRTGRAGEVGKAISLVSAI 350

Query: 694 TKSIQLAIDE 703
                 AI+ 
Sbjct: 351 EAPELFAIER 360


>gi|154299943|ref|XP_001550389.1| hypothetical protein BC1G_10862 [Botryotinia fuckeliana B05.10]
 gi|160380638|sp|A6SEH9|DED1_BOTFB RecName: Full=ATP-dependent RNA helicase ded1
 gi|150857142|gb|EDN32334.1| hypothetical protein BC1G_10862 [Botryotinia fuckeliana B05.10]
          Length = 683

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ L+++L  +N     +H +    ER   +   R G+  +LV   +   
Sbjct: 448 TLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAAR 507

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           GLDIP    V   D             +  IGR  R  N+ +
Sbjct: 508 GLDIPNVKHVVNYD-----LPTDIDDYVHRIGRTGRAGNTGI 544


>gi|76781331|gb|ABA54551.1| vasa-like protein [Monopterus albus]
          Length = 618

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 72/185 (38%), Gaps = 22/185 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             T++ SAT       +    +    ++   L     E+  A T VE  + ++   +++ 
Sbjct: 379 HQTLMFSAT-----FPEDIQRMAADFLKTDYLFLAVGEVGGACTDVEQTFVQVTKFSKRD 433

Query: 583 -----------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       R ++   TKR A+ +  +L +  +    +H + +  ER + + D R G
Sbjct: 434 QLVEFLKTTGTERTMVFAETKRQADFIALFLCQEKVPTTSIHGDREQPEREKALADFRSG 493

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYA 690
           K  VLV  ++   GLDIP+   V   D        +    +  IGR  R  N  + + + 
Sbjct: 494 KCLVLVATSVAARGLDIPDVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNIGRAVSFF 548

Query: 691 DTITK 695
           D    
Sbjct: 549 DPNAD 553


>gi|159131126|gb|EDP56239.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus A1163]
          Length = 1211

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 96/261 (36%), Gaps = 30/261 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     +E ++    +V P +    E+R+  T+   + + + 
Sbjct: 758 QTVLFSATFPRNMEALARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLEILG 817

Query: 577 LA----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                 A +  R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 818 NLYSDDANEDARALIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGI 877

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VL+  ++   GLD+ +  LV   DA            +   GR  R  N+   +   T
Sbjct: 878 FPVLIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTFLT 932

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  + ++D     R+   +        P+ V++ +   ++ +       +      + 
Sbjct: 933 EEQE-RYSVDIAKALRQSGQK-------VPEPVQKMVDSFLEKVKAGKEKASASGFGGKG 984

Query: 753 LSLSKKKGKAHLKSLRKQMHL 773
           L    ++  A       +M  
Sbjct: 985 LERLDQERDA------ARMRE 999


>gi|293335017|ref|NP_001168055.1| hypothetical protein LOC100381785 [Zea mays]
 gi|223945729|gb|ACN26948.1| unknown [Zea mays]
          Length = 388

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 16/186 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYD 573
              T++ SAT    E+++     ++  I          T L+   VE      +   + D
Sbjct: 116 ARQTMLFSAT-FPKEIQKMASDFLDNYIFLAVGRVGSSTDLIAQRVEFVQEADKRSHLMD 174

Query: 574 EINLAAQQGLRIL--LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            ++     G + L  + V TKR A+ L  +L         +H +    ER   +R  + G
Sbjct: 175 LLHAQRDTGKQTLTLVFVETKRGADSLESWLCMNGFPATSIHGDRNQQEREYALRSFKSG 234

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   GLDIP    V   D             +  IGR  R   S +     
Sbjct: 235 QTPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKSGLATAFF 289

Query: 692 TITKSI 697
               S 
Sbjct: 290 NDNNSS 295


>gi|118374174|ref|XP_001020279.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89302045|gb|EAS00033.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 475

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 77/197 (39%), Gaps = 17/197 (8%)

Query: 524 TTIVVSATPGSWELEQCQGI--------IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
              + SAT     LE  +          +    +   G+    + +     + + + + +
Sbjct: 276 QVALFSATMAPEILEITKQFMRDPATILVKNDDLTLDGIKQFYIALDKEEWKFDTLVE-L 334

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    I+    TK+  ++L + L E+N+ V  MH E+    R  I+++ R G   V
Sbjct: 335 YNNIEIAQAIIY-CNTKKRVDELRDKLIEKNMTVSAMHGEMDQQNRDLIMKEFRTGTSRV 393

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  +LL  G+DI +  LV   D         K S I  IGR+ R     V +       
Sbjct: 394 LITTDLLSRGIDIHQVNLVINYD-----LPLKKESYIHRIGRSGRFGRKGVAINFVVPAD 448

Query: 696 SIQLAIDETTRRREKQL 712
           +    + ET +  + Q+
Sbjct: 449 A--KFLKETEKYYQTQI 463


>gi|70995215|ref|XP_752371.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus Af293]
 gi|74672743|sp|Q4WT99|PRP5_ASPFU RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|66850006|gb|EAL90333.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus Af293]
          Length = 1211

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 96/261 (36%), Gaps = 30/261 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     +E ++    +V P +    E+R+  T+   + + + 
Sbjct: 758 QTVLFSATFPRNMEALARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLEILG 817

Query: 577 LA----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                 A +  R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 818 NLYSDDANEDARALIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGI 877

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VL+  ++   GLD+ +  LV   DA            +   GR  R  N+   +   T
Sbjct: 878 FPVLIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTFLT 932

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  + ++D     R+   +        P+ V++ +   ++ +       +      + 
Sbjct: 933 EEQE-RYSVDIAKALRQSGQK-------VPEPVQKMVDSFLEKVKAGKEKASASGFGGKG 984

Query: 753 LSLSKKKGKAHLKSLRKQMHL 773
           L    ++  A       +M  
Sbjct: 985 LERLDQERDA------ARMRE 999


>gi|326923426|ref|XP_003207937.1| PREDICTED: nucleolar RNA helicase 2-like [Meleagris gallopavo]
          Length = 602

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 82/201 (40%), Gaps = 23/201 (11%)

Query: 523 PTTIVVSAT-P----------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           P T++ SAT P             E EQ   I  +     T +    ++ RS++ +VE +
Sbjct: 220 PQTLLFSATCPRWVYDVAKKYMKDEYEQVDLIGKKTQRTATTVEHLAIQCRSSQ-RVEVL 278

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            D I + +    R ++   TK+ A +L           + +H ++   +R   ++  R G
Sbjct: 279 GDIIQVYSGSHGRTIVFCETKKEANELA-LNSALKQEAQSLHGDIPQKQREITLKGFRNG 337

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYA 690
            F+VL+  N+   GLDIPE  LV      K+       S I   GR  R   +   I + 
Sbjct: 338 VFEVLIATNVAARGLDIPEVDLVIQCSPPKDV-----DSYIHRSGRTGRAGRAGICICFY 392

Query: 691 DTITKSIQLAIDE----TTRR 707
               + +   +++    T RR
Sbjct: 393 QRKEEDLLKQVEQKAGITFRR 413


>gi|220913497|ref|YP_002488806.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
 gi|219860375|gb|ACL40717.1| DEAD/DEAH box helicase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 694

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ++  V TK   EDL + L  R  +   ++ ++   +R   +  L+ G+ D+LV  ++   
Sbjct: 298 VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAAR 357

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+     V   D   +    S    I   GRA RN +   IL+     K +  AI++ 
Sbjct: 358 GLDVERISHVINYDIPHD--TESYVHRIGRTGRAGRNGD--AILFMTPREKYLLRAIEKA 413

Query: 705 TRRREKQL 712
           TR+  +Q+
Sbjct: 414 TRQSVEQM 421


>gi|116693760|ref|YP_839293.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|116651760|gb|ABK12400.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 507

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 98/299 (32%), Gaps = 27/299 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLRFEEWNCLRPTTIVVS 529
            +D +     Q   +          + + GF   L +     P +          T++ S
Sbjct: 158 LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAK--------RQTLLFS 209

Query: 530 ATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLR 584
           AT      +   GI+   V+  + P       ++  +     + +       +A  +   
Sbjct: 210 ATFSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNKPDLFMHLVAQNRWEH 269

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V T+   + L   L +    V  +H +     R+  +   + G+  +LV  ++   
Sbjct: 270 ALVFVKTRNGVDYLALMLEKTGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAAR 329

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           GLDI +  LV  +D             +  IGR  R   S V +            AI+ 
Sbjct: 330 GLDIDDLPLVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEA 384

Query: 704 TTR---RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             R   RRE++     +H   P++      E+I             +    + +   KK
Sbjct: 385 LIRQTLRREEEPGFEAEHR-VPET--SATGEIIKKPKKPKKPKVQQAAPVGRQAQPGKK 440


>gi|316978431|gb|EFV61418.1| putative ATP-dependent RNA helicase Pl10 [Trichinella spiralis]
          Length = 552

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKR A DL  +L      V  +H ++K  ER + +   R G   +LV   +   
Sbjct: 348 TLIFVETKRGAADLAYFLSGERYSVVAIHGDLKQFEREQHLESFRSGNTPILVATAVAAR 407

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLDIP    V   D   E         +  IGR  R  N      + +   K++   + E
Sbjct: 408 GLDIPNVKHVINYDLPSE-----IDEYVHRIGRTGRVGNIGLATTFFNNKNKNMARDLAE 462


>gi|269962576|ref|ZP_06176923.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
 gi|269832689|gb|EEZ86801.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
          Length = 644

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 75/204 (36%), Gaps = 30/204 (14%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-DPILLEDAATTNISIDAQQLSLS 756
              I+  T                 +S  E+I   + D +     +     ++A++   S
Sbjct: 357 LRTIERVT-----------------KSSMEEIQLPLRDQVAEARLSKLAAELEAEKEHKS 399

Query: 757 KKKGKAHLKSLRK------QMHLA 774
             K    ++ L+        M  A
Sbjct: 400 LDKFAELVEKLQTSLEIDPAMLAA 423


>gi|198285649|gb|ACH85363.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Salmo salar]
          Length = 611

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 93/255 (36%), Gaps = 30/255 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGII------VEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT  SW  +  +  +      V+ I + T      VE  +           + 
Sbjct: 216 PQTLLFSATCPSWVYDVAKRYMRPTYEHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIG 275

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+ A +L+          + +H ++   +R   ++  R G 
Sbjct: 276 DVVQVYSGSHGRTIVFCETKKDANELS-MNASIKQSSQSLHGDIPQKQREITLKGFRSGT 334

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F+VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 335 FEVLVATNVAARGLDIPEVDLVVQCSPPKDV-----ESYIHRSGRTGRAGRTGVCICFY- 388

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                        R+ E QL +  +K  I  + V       I     +DA     S+  Q
Sbjct: 389 ------------QRKEEDQLRYVEQKAGITFKRVGVPTANDIIKSSSKDAVRFLDSVPPQ 436

Query: 752 QLSLSKKKGKAHLKS 766
            +   +      ++ 
Sbjct: 437 AIEYFRVSATKLIEE 451


>gi|116206328|ref|XP_001228973.1| hypothetical protein CHGG_02457 [Chaetomium globosum CBS 148.51]
 gi|121789113|sp|Q2HBE7|DED1_CHAGB RecName: Full=ATP-dependent RNA helicase DED1
 gi|88183054|gb|EAQ90522.1| hypothetical protein CHGG_02457 [Chaetomium globosum CBS 148.51]
          Length = 688

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 65/172 (37%), Gaps = 14/172 (8%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L     + V ++   +  +   VE      +   + D ++
Sbjct: 393 QTLMFSATFPRDIQMLAQDFLNDYVFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILH 452

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G   L+ V TKRMA+ L+++L  +N     +H +    ER   +   R GK  +L
Sbjct: 453 --THAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALELFRNGKCPIL 510

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V   +   GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 511 VATAVAARGLDIPNVTHVINYD-----LPTDVDDYVHRIGRTGRAGNTGIAT 557


>gi|266621876|ref|ZP_06114811.1| excinuclease ABC subunit B [Clostridium hathewayi DSM 13479]
 gi|288866408|gb|EFC98706.1| excinuclease ABC subunit B [Clostridium hathewayi DSM 13479]
          Length = 69

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 47/67 (70%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ ++Y P+GDQP AI  L+KG     + + LLGVTG GKTFTMA  I+ +Q+  +++A
Sbjct: 3   FKLHSEYQPTGDQPQAIEALVKGFKEGSQFETLLGVTGFGKTFTMANAIQQLQKSTLIIA 62

Query: 201 PNKILAA 207
            NK LA+
Sbjct: 63  RNKTLAS 69


>gi|78189083|ref|YP_379421.1| DEAD/DEAH box helicase-like [Chlorobium chlorochromatii CaD3]
 gi|78171282|gb|ABB28378.1| ATP-dependent RNA helicase CsdA [Chlorobium chlorochromatii CaD3]
          Length = 640

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 6/157 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK M  +L E L  R      ++ ++   +R   I  L+ G  +++V  ++   
Sbjct: 252 MIIFSRTKTMTIELAEKLQARGYAAAALNGDMPQNQRERTIEQLKNGNINIVVATDVAAR 311

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     K++  AI++
Sbjct: 312 GLDVERISHVVNYD-----IPSDTESYVHRIGRTGRAGRAGDAILFVAPREKNMLYAIEK 366

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
            TR R +Q+       IN + + +    + D I  ED
Sbjct: 367 ATRSRIEQMVLPTTEVINNKRIAKFNQRISDTIAAED 403


>gi|95930488|ref|ZP_01313224.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95133528|gb|EAT15191.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 433

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 91/240 (37%), Gaps = 18/240 (7%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D +   +     +          + + GF      D R +     +  +  T++ SAT
Sbjct: 134 LIDYAKQKVFSFKRIEVLVIDEADRMFDMGFI----SDLRFILRRLPSYDKRQTMLFSAT 189

Query: 532 PGSWELEQCQGIIVEQ---IIRPTGLVDPPVEI----RSARTQVEDVYDEINLAAQQGLR 584
                +E     + E     I P  +    VE       A+ ++  +   +N     G R
Sbjct: 190 LSPRVMELAYDFMNEAEKVQIEPEQVTAERVEQIVYHVGAKEKIPLLLGLLNGRMADG-R 248

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TKR  + +T  L   +++   +  ++  ++R+ I+ + + GK  VLV  ++   
Sbjct: 249 VMVFANTKRDTDYVTRVLQANDVKAAQISGDISQVKRMRILSEFKEGKVQVLVATDVASR 308

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           G+ I +   V   D       +     +  IGR AR   S   I+ AD        AI+E
Sbjct: 309 GIHIEDVTHVVNYDV-----PQDPEDYVHRIGRTARAGASGLAIMMADEDLVYHLPAIEE 363


>gi|229506042|ref|ZP_04395551.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
 gi|229510102|ref|ZP_04399582.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
 gi|229517768|ref|ZP_04407213.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
 gi|229605573|ref|YP_002876277.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
 gi|229345804|gb|EEO10777.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
 gi|229352547|gb|EEO17487.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
 gi|229356393|gb|EEO21311.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
 gi|229372059|gb|ACQ62481.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
          Length = 653

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 252 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 311

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 312 TDVVARGLDVPRITHVYNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 366

Query: 698 QLAIDETTR 706
              I+  TR
Sbjct: 367 LRTIERVTR 375


>gi|255713704|ref|XP_002553134.1| KLTH0D09746p [Lachancea thermotolerans]
 gi|238934514|emb|CAR22696.1| KLTH0D09746p [Lachancea thermotolerans]
          Length = 621

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ LT++L  +N+R   +H +    ER   +   R GK  +LV   +   
Sbjct: 409 TLIFVETKRMADALTDFLIMQNLRATAIHGDRSQSERERALAAFRSGKASLLVATAVAAR 468

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GLDIP    V   D             +  IGR  R  N+ V  
Sbjct: 469 GLDIPNVTHVINYD-----LPNDIDDYVHRIGRTGRAGNTGVAT 507


>gi|229522888|ref|ZP_04412302.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80]
 gi|229340105|gb|EEO05113.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80]
          Length = 464

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 15/190 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +G++   VE  + P       VE  I  A   V+   D + 
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD--VKKKPDMLV 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++G   ++L+ + TK  A  L  YL E+ +    +H       R   + D + G+  
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +LV  ++   G+DIP+   V   +  K          +  IGR  R     K I     I
Sbjct: 296 ILVATDIAARGIDIPQLPQVMNFELPKI-----AEDYVHRIGRTGRAGEVGKAISLVSAI 350

Query: 694 TKSIQLAIDE 703
                 AI+ 
Sbjct: 351 EAPELFAIER 360


>gi|159125976|gb|EDP51092.1| inositol 5-phosphatase, putative [Aspergillus fumigatus A1163]
          Length = 429

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 79/193 (40%), Gaps = 22/193 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   G+    + +     + +   D
Sbjct: 207 ATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCD 266

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 267 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 321

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V I +
Sbjct: 322 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGRFGRKGVAINF 376

Query: 690 ADTITKSIQLAID 702
             +    I   I+
Sbjct: 377 VTSDDVRILRDIE 389


>gi|126306068|ref|XP_001381369.1| PREDICTED: similar to Chain C, Structure Of The Human Exon Junction
           Complex With A Trapped Dead-Box Helicase Bound To Rna
           [Monodelphis domestica]
          Length = 404

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 80/192 (41%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             +++SAT     LE     + + I        +   G+    V +     + +   D+Y
Sbjct: 206 QVVLISATLPHEILEMTTKFMTDPIRILVRRDELTLEGIKQFFVAVEREEWKFDTVCDLY 265

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + LTE + E N  V  +H ++ + ER  I+++ R G 
Sbjct: 266 DSLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSIHGDMPSRERKFIMKEFRSGV 320

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +  
Sbjct: 321 NRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINFVK 375

Query: 692 TITKSIQLAIDE 703
                I   I++
Sbjct: 376 NDDIRILRDIEQ 387


>gi|328470214|gb|EGF41125.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus 10329]
          Length = 522

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 92/262 (35%), Gaps = 33/262 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   ++++           Q+  +   +  R     + GF      D R  +  
Sbjct: 130 TPGRLMDLYNQNAV--------KFDQLEVLVLDEADRM---LDMGFI----RDIR--KIL 172

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
                +   ++ SAT      +  +G++   VE  + P       VE       V+    
Sbjct: 173 ALLPKQRQNLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAP 232

Query: 574 EINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +    + G   ++L+   TK  A  L ++L E+N+    +H       R + + D + G
Sbjct: 233 MLVKLIKDGDWKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSG 292

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYA 690
           +  VLV  ++   G+DIP+   V   +  K          +  IGR  R     K I   
Sbjct: 293 EIRVLVATDIAARGIDIPQLPQVVNFELPKV-----AEDYVHRIGRTGRAGEIGKAISLV 347

Query: 691 DTITKSIQLAIDETTRRREKQL 712
             +  S   AI+     R  Q 
Sbjct: 348 CALEASELFAIE-----RLIQE 364


>gi|326693280|ref|ZP_08230285.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
           [Leuconostoc argentinum KCTC 3773]
          Length = 518

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 92/266 (34%), Gaps = 33/266 (12%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +        E I I    L    V+   +R+   +  D    I  
Sbjct: 176 QTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRARDNEKFDTMTRILD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                L  ++   TKR  E+L   L  R      +H ++    R  ++   +  + ++LV
Sbjct: 236 VQAPTL-AIVFGRTKRRVEELARGLEARGYHAAGLHGDLTQQMRSRVLSQFKSHEINILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS 696
             ++   GLD+ +   V   D       +   S +  IGR  R     V + +       
Sbjct: 295 ATDVAARGLDVKDVSHVYNFD-----IPQDPESYVHRIGRTGRAGAEGVSVTFVAPNEMD 349

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQS--------VKEKIMEVIDPILLEDAATTNISI 748
              AI++ T++R   LE        P +        +K    EV   +   DA      +
Sbjct: 350 YLRAIEDLTKKRMTPLE--------PATLQEARIGKIKNAAGEVAKLVNTVDADDIQSEV 401

Query: 749 DAQQLSLSKKKGKAHL----KSLRKQ 770
           +      S ++  A L      L KQ
Sbjct: 402 EKLTAQYSSEQLAAALLSSVADLEKQ 427


>gi|195579332|ref|XP_002079516.1| GD23992 [Drosophila simulans]
 gi|194191525|gb|EDX05101.1| GD23992 [Drosophila simulans]
          Length = 547

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 83/249 (33%), Gaps = 33/249 (13%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           L ++        VD + VT      +   +  R     + GF        R L       
Sbjct: 265 LLDF--------VDRTFVTFEDTRFVVLDEADRM---LDMGF----SEGMRKLMTHVTMR 309

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV--------DPPVEIRSARTQVEDVY 572
            +  T++ SAT            +   +    G+V            E+ S   +   + 
Sbjct: 310 PQHQTLMFSATFPEDIQRLAGEFLNNYVFVAIGMVGGACSDVKQTIYEV-SKFNKRAKLM 368

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           + +   A      ++ V TKR A+ L  YL E       +H +    +R + +RD + G 
Sbjct: 369 EILREEADG---TIVFVETKRGADFLASYLSETEFPTTSIHGDRLQSQREQALRDFKNGS 425

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
             VL+  ++   GLDI     V   D  K     +    +  IGR  R  N+     + D
Sbjct: 426 MKVLIATSVASRGLDIKNIKHVINYDMPK-----NIDDYVHRIGRTGRVGNNGRATTFFD 480

Query: 692 TITKSIQLA 700
                +  A
Sbjct: 481 PDQDRLIAA 489


>gi|324502932|gb|ADY41281.1| ATP-dependent RNA helicase cgh-1 [Ascaris suum]
          Length = 435

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 102/285 (35%), Gaps = 43/285 (15%)

Query: 490 DFHRKATL-AEYGFRLPSC----MDNRPLRFEEWNCLRPTTIVVSAT------------- 531
           D  R +TL  +   +L S     + +R ++F          ++ SAT             
Sbjct: 176 DMSRCSTLILDEADKLLSQDFQGILDRVIKFLPSER---QIMLYSATFPLTVATFMQKHM 232

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
              +E+   + + +  + +    V    ++                   Q  + ++   +
Sbjct: 233 KNPYEINLMEELTLLGVTQFYAYVQEKQKVH---------CLNTLFRKLQINQSIIFCNS 283

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
            +  E L + + E      Y+HS +    R  +  D R G    LV  +LL  G+DI   
Sbjct: 284 TQRVELLAKKITEIGYSCYYIHSRMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAV 343

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
            +V   D     F R+  + +  IGR+ R  +  + +   T           T RR E +
Sbjct: 344 NVVINFD-----FPRNAETYLHRIGRSGRFGHLGIAINLITYEDRF------TLRRIEAE 392

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
           L  +      P+SV  K+      ++ E+    N    ++ ++++
Sbjct: 393 LRTHIA--PIPKSVDPKLYVAEHQLVDENTGNENAVGSSKAVTVA 435


>gi|317507153|ref|ZP_07964911.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
 gi|316254555|gb|EFV13867.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
          Length = 530

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 73/191 (38%), Gaps = 11/191 (5%)

Query: 523 PTTIVVSAT-PGS--WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
               + SAT PG+     +      VE  ++        +E R          D +    
Sbjct: 184 KQVALFSATMPGAIRKISKTYLHNPVEVTVKAATTTSENIEQRYTLVAHHRKLDLLTRIL 243

Query: 580 QQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +      +++ V TK+  E+L E L  R    R ++ ++    R   +  LR GK D+LV
Sbjct: 244 EVEPFSAMIVFVRTKQATEELAERLRARGFAARPLNGDIPQAARERTVSALREGKIDILV 303

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKS 696
             ++   GLD+     V   DA          S +  IGR  R   + V   +     +S
Sbjct: 304 ATDVAARGLDVERITHVFNYDA-----PHDTESYVHRIGRTGRAGRTGVSYLFVTPRERS 358

Query: 697 IQLAIDETTRR 707
           +  AI+  TR+
Sbjct: 359 MIGAIERATRQ 369


>gi|226487072|emb|CAX75401.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
          Length = 647

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 75/213 (35%), Gaps = 26/213 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT         +  + + I    G V          TQ+ ++ D+     +Q L
Sbjct: 148 QTLMWSATWPKEVQTLAREFLTDYIQVNIGSVSLHA--NPNITQIVEIMDD--WRKEQRL 203

Query: 584 ----------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                     R L+ V TKR  + LT  L  R   V  MH   +  +R   +   + G+ 
Sbjct: 204 IELLSSFGRSRTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLASFKSGRM 263

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           ++L+  ++   GLDI     V   D     F       I  IGR AR+          T 
Sbjct: 264 NILIATDVASRGLDIDNIEYVVNFD-----FPNQTEDYIHRIGRTARSDKRGTAFTFFTY 318

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
             + Q        R   ++       I P+ ++
Sbjct: 319 KNARQA-------RDLIEILDEANQEITPELIQ 344


>gi|226487070|emb|CAX75400.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
 gi|226487074|emb|CAX75402.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
 gi|226487078|emb|CAX75404.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
          Length = 768

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 75/213 (35%), Gaps = 26/213 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT         +  + + I    G V          TQ+ ++ D+     +Q L
Sbjct: 269 QTLMWSATWPKEVQTLAREFLTDYIQVNIGSVSLHA--NPNITQIVEIMDD--WRKEQRL 324

Query: 584 ----------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                     R L+ V TKR  + LT  L  R   V  MH   +  +R   +   + G+ 
Sbjct: 325 IELLSSFGRSRTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLASFKSGRM 384

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           ++L+  ++   GLDI     V   D     F       I  IGR AR+          T 
Sbjct: 385 NILIATDVASRGLDIDNIEYVVNFD-----FPNQTEDYIHRIGRTARSDKRGTAFTFFTY 439

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
             + Q        R   ++       I P+ ++
Sbjct: 440 KNARQA-------RDLIEILDEANQEITPELIQ 465


>gi|145974735|gb|ABQ00071.1| VASA [Fenneropenaeus chinensis]
          Length = 712

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 6/117 (5%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               +IL+ V  KR+A+ +  YL E+N R   MH +    +R + + D R G F++LV  
Sbjct: 523 ADDEKILVFVEQKRVADFVGTYLCEKNFRATTMHGDRYQAQREQALTDFRTGVFNILVAT 582

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
            +   GLDI   G+V   D  KE         +  IGR  R  N    I + D    
Sbjct: 583 AVAARGLDIKGIGVVVNYDLPKE-----IDEYVHRIGRTGRLGNRGLSISFYDEEAD 634


>gi|3986287|dbj|BAA34994.1| DjVLGB [Dugesia japonica]
          Length = 781

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 66/188 (35%), Gaps = 18/188 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E+++     +   I  T          +    + +        +    
Sbjct: 372 QTLMFSAT-FPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEIIYMTDVEKL--NYLKN 428

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I         IL+ V TK+ A+ L  +L  +   V  +H +   +ER   +   R G+  
Sbjct: 429 IFNTTAPNTLILIFVETKKGADSLARFLLSKGYPVSSIHGDRSQVEREAALSMFRNGQCP 488

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV   +   GLDIP    V   D             +  IGR  R  N         + 
Sbjct: 489 ILVATAVAARGLDIPNVKHVINYD-----LPSDIEEYVHRIGRTGRLGNHGRATSFY-VD 542

Query: 695 KSIQLAID 702
           K+  +AID
Sbjct: 543 KNNNIAID 550


>gi|229514239|ref|ZP_04403700.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21]
 gi|229522353|ref|ZP_04411769.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80]
 gi|229528334|ref|ZP_04417725.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)]
 gi|229334696|gb|EEO00182.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)]
 gi|229340338|gb|EEO05344.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80]
 gi|229348219|gb|EEO13177.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21]
          Length = 653

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 252 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 311

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 312 TDVVARGLDVPRITHVYNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 366

Query: 698 QLAIDETTR 706
              I+  TR
Sbjct: 367 LRTIERVTR 375


>gi|24584399|ref|NP_723899.1| vasa [Drosophila melanogaster]
 gi|12644110|sp|P09052|VASA1_DROME RecName: Full=ATP-dependent RNA helicase vasa, isoform A; AltName:
           Full=Antigen Mab46F11
 gi|7298204|gb|AAF53438.1| vasa [Drosophila melanogaster]
          Length = 661

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 84/254 (33%), Gaps = 32/254 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++        VD + +T      +   +  R     + GF      D R +   
Sbjct: 375 TPGRLLDF--------VDRTFITFEDTRFVVLDEADRM---LDMGF----SEDMRRIMTH 419

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV--------DPPVEIRSARTQV 568
                   T++ SAT            +   +    G+V            E+     + 
Sbjct: 420 VTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRS 479

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +     I + ++Q    ++ V TKR A+ L  +L E+      +H +    +R + +RD 
Sbjct: 480 K----LIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDF 535

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G   VL+  ++   GLDI     V   D             +  IGR  R  N+    
Sbjct: 536 KNGSMKVLIATSVASRGLDIKNIKHVINYD-----MPSKIDDYVHRIGRTGRVGNNGRAT 590

Query: 689 YADTITKSIQLAID 702
                 K   +A D
Sbjct: 591 SFFDPEKDRAIAAD 604


>gi|195126028|ref|XP_002007476.1| GI12369 [Drosophila mojavensis]
 gi|193919085|gb|EDW17952.1| GI12369 [Drosophila mojavensis]
          Length = 794

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 70/187 (37%), Gaps = 21/187 (11%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           L       + QI+      +  V++    TQ+         + +   + ++ V TK+  +
Sbjct: 354 LSLSANHNILQIVDVCDESEKIVKLIQLLTQI---------SGENETKTIIFVETKKRVD 404

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           ++T  +  +  R   +H +    ER  ++   R G+  +LV  ++   GLD+ +   V  
Sbjct: 405 EITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVIN 464

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
            D     +  +    +  IGR  R+ N+    Y      +   A D        Q+    
Sbjct: 465 YD-----YPSNSEDYVHRIGRTGRSNNTGTA-YTLFTHSNANKAND------LIQVLREA 512

Query: 717 KHNINPQ 723
              INP+
Sbjct: 513 NQTINPK 519


>gi|171693513|ref|XP_001911681.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946705|emb|CAP73508.1| unnamed protein product [Podospora anserina S mat+]
          Length = 694

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 65/172 (37%), Gaps = 14/172 (8%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L     + V ++   +  +   VE      +   + D ++
Sbjct: 391 QTLMFSATFPRDIQMLAQDFLNDYVFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILH 450

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G   L+ V TKRMA+ L+++L  +N     +H +    ER   +   R GK  +L
Sbjct: 451 --THAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALELFRNGKCPIL 508

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V   +   GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 509 VATAVAARGLDIPNVTHVINYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 555


>gi|156843946|ref|XP_001645038.1| hypothetical protein Kpol_1072p50 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380640|sp|A7TKR8|DED1_VANPO RecName: Full=ATP-dependent RNA helicase DED1
 gi|156115693|gb|EDO17180.1| hypothetical protein Kpol_1072p50 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 650

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 10/127 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA++LT++L  ++ R   +H +    ER   +   + G  ++LV   +   
Sbjct: 420 TLIFVETKRMADELTDFLIMQDFRATAIHGDRTQSERERALAAFKNGNANLLVATAVAAR 479

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD-----TITKSIQL 699
           GLDIP    V   D             +  IGR  R  N+ V           I K +  
Sbjct: 480 GLDIPNVTHVVNYD-----LPSDIDDYVHRIGRTGRAGNTGVATAFFNRGNRNIVKGMYE 534

Query: 700 AIDETTR 706
            + E  +
Sbjct: 535 LLAEANQ 541


>gi|218659300|ref|ZP_03515230.1| transcription-repair coupling factor (TRCF) protein [Rhizobium etli
           IE4771]
          Length = 322

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 95/330 (28%), Gaps = 66/330 (20%)

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
            +    L +  + R       G + V G  +++F    E+   R+  FG+ +E I  F P
Sbjct: 1   DDFAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGSEE-PVRLDFFGDTLESIRSFDP 59

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
            + +    V ++ +   S       T++            R   L   G       L   
Sbjct: 60  ASQRTTGQVRSLDLNPMSEVTLTPDTISRF----------RKNYLSAFGATTRDDALYLA 109

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
           ++              +E++  +       E   T+F+Y+  D  +  D         + 
Sbjct: 110 VS-------EGRRYPGMEHWLPFFY-----EKLDTVFDYL-SDFRVVTD--------HTV 148

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC----- 540
               +   K  L  +  RL S              +   T      PG   L+       
Sbjct: 149 REAAEERSKLVLDYFDARLNSGQ-------PSKGQMAQGTPYKPVAPGQLYLDSKLFAKT 201

Query: 541 ----QGIIVEQIIRPTGLVDPPVEIRSARTQ------------------VEDVYDEINLA 578
                 I V       G     V I + + Q                   + V   I   
Sbjct: 202 LDALGAIRVSPFNEIEGEARRVVNIEARQGQRWARSNAEGGGDAERVNIFDVVVKHIADR 261

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
              G ++L+T  T+   E L + L E  + 
Sbjct: 262 RAGGAKVLVTAWTEGSLERLLQVLNEHGLE 291


>gi|323490564|ref|ZP_08095770.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
 gi|323395830|gb|EGA88670.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
          Length = 506

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 90/256 (35%), Gaps = 31/256 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE------IRSARTQVEDVYDEINL 577
            T++ SAT         +  +    I      +  VE      ++S   +  D    +  
Sbjct: 177 QTLLFSATMPDAIRRIAEKFMKTPEIVKIKSKEMTVENIEQFYVKSVEREKFDFLSRLLN 236

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             QQ    ++   TKR  ++L + L  R      +H ++   +R+ +++  + GK D+LV
Sbjct: 237 -VQQPELAIVFGRTKRRVDELAKALNIRGYLAEGIHGDLSQAKRMSVLKQFKAGKIDILV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R     V +   T  +  
Sbjct: 296 ATDVAARGLDISGVSHVYNFD-----IPQDPESYVHRIGRTGRAGKKGVAVTFVTPREMG 350

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
            L+I E                   ++ K+K+  ++ P   E           Q L +++
Sbjct: 351 YLSIVE-------------------RTTKKKMEALVPPTANEAVLGQKRVAMEQLLEMTE 391

Query: 758 KKGKAHLKSLRKQMHL 773
           K      +    QM  
Sbjct: 392 KNNLGDYRDFATQMLE 407


>gi|224007100|ref|XP_002292510.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972152|gb|EED90485.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 365

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 72/181 (39%), Gaps = 16/181 (8%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSARTQVE--DVYDEI 575
            T++ SAT P +  +++  G  +   I     R     +  V+      Q +  D     
Sbjct: 164 QTMMFSATFPAN--IQRLAGDFMRDYIFLTVGRVGSASENVVQSVEYVEQNDKLDALMRF 221

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            L  Q+GL IL+ V TKR  + + + L ER      +H +    ER + +R  + G+  V
Sbjct: 222 LLTIQEGL-ILIFVETKRNCDFVEDILCERGFPACSIHGDKSQREREDSLRAFKTGRCPV 280

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D        +    +  IGR  R  N+   L       
Sbjct: 281 LVATDVAARGLDIPNVTQVVNYD-----LPTNIDDYVHRIGRTGRAGNTGAALSFVNEKN 335

Query: 696 S 696
           S
Sbjct: 336 S 336


>gi|242791510|ref|XP_002481772.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218718360|gb|EED17780.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 387

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 22/193 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 186 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCD 245

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 246 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 300

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V I +
Sbjct: 301 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 355

Query: 690 ADTITKSIQLAID 702
             +    I   I+
Sbjct: 356 VTSDDVRILRDIE 368


>gi|148977343|ref|ZP_01813957.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
 gi|145963456|gb|EDK28720.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
          Length = 646

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 74/193 (38%), Gaps = 24/193 (12%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-DPILLEDAATTNISIDAQQLSLS 756
              I+  T                 +S  E+I   + D +     A     ++ ++ S +
Sbjct: 357 LRTIERVT-----------------KSTMEEIQLPLRDQVAAARVAKLGAELETEKESKA 399

Query: 757 KKKGKAHLKSLRK 769
            +     + +L++
Sbjct: 400 LENFAGLITTLQE 412


>gi|308502287|ref|XP_003113328.1| hypothetical protein CRE_25199 [Caenorhabditis remanei]
 gi|308265629|gb|EFP09582.1| hypothetical protein CRE_25199 [Caenorhabditis remanei]
          Length = 698

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 68/209 (32%), Gaps = 28/209 (13%)

Query: 517 EWNCLRPTTIVVSATPGSWE---------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
            +       +  +  P   E           +   ++ +  ++P  +      + S    
Sbjct: 402 GFEPQIRQIVEFNRMPPKEERVTAMFSATFPKEIQLLAQDFLKPNYVFLAVGRVGSTSEN 461

Query: 568 VEDVYDEINLAAQQGLR------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           +      +    ++                L+ V TKR A DL  YL  +N +V  +H +
Sbjct: 462 IMQKIVWVEEDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAYYLSRQNYQVVTIHGD 521

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +K  ER + +   R G   +LV   +   GLDIP    V   D             +  I
Sbjct: 522 LKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYD-----LPSDVDEYVHRI 576

Query: 676 GRAARNVNSKVI--LYADTITKSIQLAID 702
           GR  R  N  +    + D      +  +D
Sbjct: 577 GRTGRVGNVGLATSFFNDKNRNIARELMD 605


>gi|294936207|ref|XP_002781657.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
 gi|239892579|gb|EER13452.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
          Length = 395

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 76/193 (39%), Gaps = 22/193 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              ++VSAT  +  LE     +            +   G+    V +   + + +   D+
Sbjct: 196 TQCVLVSATMPNEILEMTNNFMNNPFRVLVKRDELTLEGIKQFFVAVEKEQWKFDTLCDL 255

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TK+  + LT  + E    V  MH ++   ER  I++  R G
Sbjct: 256 YDTLTIT-----QAVIFCNTKQKVDWLTNKMREAKFTVVSMHGDMPQKERDAIMQKFRSG 310

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
           +  VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I + 
Sbjct: 311 QARVLITTDIWGRGLDVQQVSLVICYD-----LPNNRELYIHRIGRSGRFGRKGVAINFV 365

Query: 691 DTITKSIQLAIDE 703
                 I   I++
Sbjct: 366 KEDDVRILRDIEQ 378


>gi|229526685|ref|ZP_04416089.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426]
 gi|229336843|gb|EEO01861.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426]
          Length = 651

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 252 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 311

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 312 TDVVARGLDVPRITHVYNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 366

Query: 698 QLAIDETTR 706
              I+  TR
Sbjct: 367 LRTIERVTR 375


>gi|198274601|ref|ZP_03207133.1| hypothetical protein BACPLE_00753 [Bacteroides plebeius DSM 17135]
 gi|198272048|gb|EDY96317.1| hypothetical protein BACPLE_00753 [Bacteroides plebeius DSM 17135]
          Length = 424

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 83/203 (40%), Gaps = 37/203 (18%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       E+II+   +     ++      ++ 
Sbjct: 182 QTIMFSATMPTKIQQLAKTILHDPVEVKLAVSKPAEKIIQAAYICYEAQKL----GIIQS 237

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           ++       QQ  R+++   +K   +++T+ L    + V  MHS+++  +R EI+ + R 
Sbjct: 238 LFQS-----QQPERVIIFASSKLKVKEVTKALKRMKLNVGEMHSDLEQSQREEIMHEFRN 292

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            + D+LV  +++  G+DI +  LV   D             +  IGR AR  N    +  
Sbjct: 293 RRIDILVATDIVARGIDIDDIRLVINYDV-----PHDSEDYVHRIGRTARANNDGCAITF 347

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                     + ET + R KQ+E
Sbjct: 348 ----------VSETEQTRFKQIE 360


>gi|125580822|gb|EAZ21753.1| hypothetical protein OsJ_05388 [Oryza sativa Japonica Group]
          Length = 516

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 93/262 (35%), Gaps = 32/262 (12%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      D+    F+ +   R  T++ SAT         +  +V+ +I   G  
Sbjct: 238 RLVDLGFE-----DDIREVFDHFKAQR-QTLLFSATMPKKIQNFAKSALVKPVIVNVGRA 291

Query: 555 ----VDPPVEIRSARTQVED--VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
               +D   E+   +   ED  +   +    +    +L+    K   + + EYL  + + 
Sbjct: 292 GAANLDVIQEVEYVK---EDARIIYLLECLQKTPPPVLVFCENKADVDYIHEYLLLKGVE 348

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H      ER   I   + GK DVLV  ++  +GLD P+   V   D   E      
Sbjct: 349 AVAIHGGKDQEERENAIEFFKNGKKDVLVATDVASKGLDFPDIQHVINYDMPAE-----I 403

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            + +  IGR  R   + +        ++    +D       K L    K  I P      
Sbjct: 404 ENYVHRIGRTGRCGKTGIATTFINKNQTETTLLD------LKHLLKEAKQRIPPV----- 452

Query: 729 IMEVIDPILLEDAATTNISIDA 750
           + E+ DP+  E+       +  
Sbjct: 453 LAELNDPLEDEETMAKESGVKG 474


>gi|294877852|ref|XP_002768159.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
 gi|239870356|gb|EER00877.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
          Length = 395

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 76/193 (39%), Gaps = 22/193 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              ++VSAT  +  LE     +            +   G+    V +   + + +   D+
Sbjct: 196 TQCVLVSATMPNEILEMTNNFMNNPFRVLVKRDELTLEGIKQFFVAVEKEQWKFDTLCDL 255

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TK+  + LT  + E    V  MH ++   ER  I++  R G
Sbjct: 256 YDTLTIT-----QAVIFCNTKQKVDWLTNKMREAKFTVVSMHGDMPQKERDAIMQKFRSG 310

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
           +  VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I + 
Sbjct: 311 QARVLITTDIWGRGLDVQQVSLVICYD-----LPNNRELYIHRIGRSGRFGRKGVAINFV 365

Query: 691 DTITKSIQLAIDE 703
                 I   I++
Sbjct: 366 KEDDVRILRDIEQ 378


>gi|146197837|dbj|BAF57631.1| DEAD box polypeptide 48 protein [Dugesia japonica]
          Length = 376

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 16/190 (8%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDE 574
              I++SAT     LE     +   I        +   G+    V +     + + + D 
Sbjct: 176 TQVILISATLPHDILEMTSKFMTNPIRILVKRDELTLEGIKQYFVSVEREEWKFDTLCDI 235

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            +       ++++   TKR  E LT+ + E N  V  +H ++   ER EI R  R  +  
Sbjct: 236 YDTVTVT--QVVIFCNTKRKVEWLTDKMRENNFTVSSIHGDMPQGERDEITRQFRALETR 293

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           VL+  ++   G+D+    LV   D        ++   I  IGR+ R     V I +  + 
Sbjct: 294 VLITTDVWARGIDVQHVSLVINYD-----LPNNRELYIHRIGRSGRYGRKGVAINFVKSD 348

Query: 694 TKSIQLAIDE 703
              I   I++
Sbjct: 349 DVRILRDIEQ 358


>gi|270016295|gb|EFA12741.1| Rm62 [Tribolium castaneum]
          Length = 776

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 53/297 (17%), Positives = 109/297 (36%), Gaps = 47/297 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ + +          + + + +   +  R     + GF         P   +
Sbjct: 257 TPGRLIDFLEKGTT--------NLQRCTYLVLDEADRM---LDMGFE--------PQIRK 297

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEI---RS 563
               +RP   T++ SAT      +  Q  +   +    G +           V++     
Sbjct: 298 IIEQIRPDRQTLMWSATWPKEVRKLAQDFLRNYVQINIGSLQLSANHNILQIVDVCQEHE 357

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
             T++ ++  EI    + G +I++ V TK+  E +T  +         MH +    ER  
Sbjct: 358 KETKLNNLLQEIGNNGEPGAKIIIFVETKKKVESITRTIRRYGWPAVCMHGDKSQQERDF 417

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++R+ R GK  +L+  ++   GLD+     V   D     +  S    I  IGR  R+  
Sbjct: 418 VLREFRNGKSSILIATDVAARGLDVEGIKYVINYD-----YPNSSEDYIHRIGRTGRSDT 472

Query: 684 SKVILYADTIT-----KSIQLAIDETTRRREK-----QLEHNKKHNINPQSVKEKIM 730
           +       T +     K +   + E  + R +     +L +  +H+  P+ + E + 
Sbjct: 473 TGTSYAFFTPSNFRQAKDLVSVLKEANQNRLQVTYIHRLLYIGEHSFTPREIVEAME 529


>gi|225719342|gb|ACO15517.1| Eukaryotic initiation factor 4A-III [Caligus clemensi]
          Length = 403

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
                ++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 203 FTQICLISATLPHEILEMTSKFMADPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 262

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 263 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRS 317

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I +
Sbjct: 318 GQSRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINF 372

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 373 VKNDDIRILRDIEQ 386


>gi|11890755|gb|AAF78930.2|AAF78930 RNA helicase II/Gu protein [Homo sapiens]
          Length = 715

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVY- 572
           P T++ SAT   W         +     V+ I + T      VE   I+   TQ   V  
Sbjct: 301 PQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIG 360

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++         + +H ++   +R   ++  R G 
Sbjct: 361 DVIRVYSGHQGRTIIFCETKKEAQELSQ-NSAIKQDAQSLHGDIPQKQREITLKGFRNGS 419

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 420 FGVLVATNVAARGLDIPEVDLVIQSSPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 474

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QL           Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 475 HKEEYQL----------VQVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 522

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 523 ISHFKQSAEKLIEE 536


>gi|332834196|ref|XP_003312635.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan troglodytes]
          Length = 715

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVY- 572
           P T++ SAT   W         +     V+ I + T      VE   I+   TQ   V  
Sbjct: 301 PQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIG 360

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++         + +H ++   +R   ++  R G 
Sbjct: 361 DVIRVYSGHQGRTIIFCETKKEAQELSQ-NSAIKQDAQSLHGDIPQKQREITLKGFRNGS 419

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 420 FGVLVATNVAARGLDIPEVDLVIQSSPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 474

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QL           Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 475 HKEEYQL----------VQVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 522

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 523 ISHFKQSAEKLIEE 536


>gi|225432126|ref|XP_002274485.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1864

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 70/179 (39%), Gaps = 18/179 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP---------VEIR-SARTQVEDV 571
           R  T++ +AT      +    ++V  +    G VD           VE+      Q    
Sbjct: 675 RRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVSPPEKQRR-- 732

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            ++I  + ++G ++++   TK++ + L      RN     +H +   +ER  ++   R G
Sbjct: 733 LEQILRSQERGSKVIIFCSTKKLCDQLARS-IGRNFGAAVIHGDKSQVERDWVLNQFRSG 791

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           K  +LV  ++   GLDI +  +V   D     F       +  IGR  R   + V    
Sbjct: 792 KSPILVATDVAARGLDIKDIRVVINYD-----FPTGIEDYVHRIGRTGRAGATGVSYTF 845


>gi|154150192|ref|YP_001403810.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Methanoregula boonei 6A8]
 gi|153998744|gb|ABS55167.1| DEAD/DEAH box helicase domain protein [Methanoregula boonei 6A8]
          Length = 532

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 112/292 (38%), Gaps = 35/292 (11%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE--------Q 547
            + + GFR     D+  L  +     R  T++ SAT     +E  +             Q
Sbjct: 159 QMLDMGFR-----DDIELILKRVPQKR-QTLLFSATLPKPIIEISKRFQNRPEFVRVEYQ 212

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
            +    +    +E+R  R +++ +   I++   Q    ++   TKR AEDL   +  R  
Sbjct: 213 ELTVPAIEQSYIEVRD-RDKLDSLCRVIDVVDPQ--LAIIFCNTKRGAEDLAGRIRARGY 269

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R   +H ++K  +R  ++   R G  D+L+  ++   G+D+ +  +V   D       + 
Sbjct: 270 RAEELHGDMKQSQRDRVMGGFRKGTIDILIATDVAARGIDVEDVDMVINYDV-----PQD 324

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
               I  IGR  R   S   +   T     +  + E  +  + Q+         P    +
Sbjct: 325 VDYYIHRIGRTGRAGKSGRAITFVTSRDFTK--LREIQKYIKVQIPRK------PLPTAD 376

Query: 728 KIMEVIDPILLEDAATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNL 778
            ++E     +LE+   T      +  + + +++ +  L +L     +AA  L
Sbjct: 377 DVVEQKTKTILEEVRETIQKGGTEPYARIVEQESEGDLTTLE----IAAALL 424


>gi|262403840|ref|ZP_06080398.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
 gi|262350344|gb|EEY99479.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
          Length = 643

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTR 706
              I+  TR
Sbjct: 357 LRTIERVTR 365


>gi|253741975|gb|EES98832.1| Translation initiation factor eIF-4A, putative [Giardia
           intestinalis ATCC 50581]
          Length = 391

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 21/189 (11%)

Query: 524 TTIVVSATPGSWELEQCQGI--------IVEQIIRPTGLVDPPVEIRSA--RTQVEDVYD 573
             ++VSAT     LE  +          + E  +   G+    VE++ A     VED+Y 
Sbjct: 194 QIVLVSATLPPEILELTRQFMRDPVSILVKEAELTLDGIRQYVVELQDAWKTEVVEDIYK 253

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            ++   QQG   ++   +    ++L E L      +  +HSE+   ER +I+ + R G+ 
Sbjct: 254 VLS--VQQG---VIFCNSIARVKELAEKLKSAGHTISCIHSELDQAERNKIMGEFRSGQT 308

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
            +L+  N++  G+D+    LV   D  +E       + +  IGR+ R     V I +   
Sbjct: 309 RILIATNIIARGIDVQNVSLVINYDIPRE-----AETYLHRIGRSGRFGRKGVAINFVTD 363

Query: 693 ITKSIQLAI 701
             K    +I
Sbjct: 364 KDKQSMQSI 372


>gi|212534924|ref|XP_002147618.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|210070017|gb|EEA24107.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
          Length = 286

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 22/193 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 85  ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCD 144

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 145 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 199

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V I +
Sbjct: 200 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 254

Query: 690 ADTITKSIQLAID 702
             +    I   I+
Sbjct: 255 VTSDDVRILRDIE 267


>gi|15230730|ref|NP_187299.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75313790|sp|Q9SQV1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40
 gi|6437557|gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana]
 gi|332640879|gb|AEE74400.1| DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana]
          Length = 1088

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 70/180 (38%), Gaps = 16/180 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP---------VEIRSARTQVEDVY 572
           R  T++ +AT      +    ++V  +    G VD           VE+     + E   
Sbjct: 612 RRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEK-ERRL 670

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I  + ++G ++++   TKR+ + L   +         +H +    ER  ++   R GK
Sbjct: 671 EQILRSQERGSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGK 729

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             VL+  ++   GLDI +  +V   D     F       +  IGR  R   + V     T
Sbjct: 730 SCVLIATDVAARGLDIKDIRVVINYD-----FPTGVEDYVHRIGRTGRAGATGVAFTFFT 784


>gi|15599145|ref|NP_252639.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|218889767|ref|YP_002438631.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|9950138|gb|AAG07337.1|AE004813_4 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|218769990|emb|CAW25752.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 449

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 99/284 (34%), Gaps = 46/284 (16%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +           ++ V   Q+  +   +  R     + GF      +   L   
Sbjct: 131 TPGRLLD--------LYRQNAVKFAQLQALVLDEADRM---LDLGF----ARELDELFAA 175

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
                +  T++ SAT             +  + R        +E+    T  + V   + 
Sbjct: 176 L--PRKRQTLLFSAT---------FSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLV 224

Query: 577 LAAQQG--------------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
              ++                + L+   T++  E+L   L  + I    +H +     R+
Sbjct: 225 PVDKKRKAELFCHLLQANRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARL 284

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             ++  + G+ D+LV  ++   GLDI E  LV   D             I   GRA  + 
Sbjct: 285 RALQRFKAGEVDLLVATDVAARGLDIEEMPLVVNFDLPIV--AEDYVHRIGRTGRAGASG 342

Query: 683 NSKVILYADTIT--KSIQLAIDETTRRREKQLEHNKKHNINPQS 724
            +  ++ AD +    +I+  I +T +RRE + +   +H   PQ+
Sbjct: 343 QAVSLVCADEVELLAAIETLIGQTLQRRE-EPDFEPEHR-VPQT 384


>gi|327554933|gb|AEB00820.1| vasa-like protein [Penaeus monodon]
          Length = 707

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +  +IL+ V  KR+A+ +  YL E+N R   MH +    +R + + + R G +++LV  
Sbjct: 518 AEDEKILVFVEQKRVADFVGTYLCEKNFRATTMHGDRYQAQREQALTEFRTGVYNILVAT 577

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
            +   GLDI   G+V   D  KE         +  IGR  R  N    I + D    +
Sbjct: 578 AVAARGLDIKGIGVVVNYDLPKE-----IDEYVHRIGRTGRLGNRGLSISFYDEEADA 630


>gi|219110339|ref|XP_002176921.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411456|gb|EEC51384.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 529

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 5/173 (2%)

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
           V A    +  +  Q  +    +     V   +E+ +   +  ++   +        R+L+
Sbjct: 322 VQALANDYLQDFYQVTVGSLDLSANKDVTQIIEVCTDMDKYRNLQRYLRENLSPKDRVLV 381

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
            V TK+  + LT  L     + R MH +    ER   +R+ +  +  +LV  ++   GLD
Sbjct: 382 FVETKKGCDMLTRSLRSDGFQARAMHGDKSQEERDWALREFKGMQSTLLVATDVAARGLD 441

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           + +  +V   D  KE       S I  +GR  R       +      K+ +LA
Sbjct: 442 VDDIRIVVNFDFPKE-----MDSYIHRVGRTGRAGKKGFAVSFFVPDKNARLA 489


>gi|255746441|ref|ZP_05420388.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
 gi|262148974|ref|ZP_06028121.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
 gi|255736195|gb|EET91593.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
 gi|262031252|gb|EEY49869.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
          Length = 643

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVYNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTR 706
              I+  TR
Sbjct: 357 LRTIERVTR 365


>gi|91206663|sp|Q2UAK1|FAL1_ASPOR RecName: Full=ATP-dependent RNA helicase fal1
 gi|83771282|dbj|BAE61414.1| unnamed protein product [Aspergillus oryzae]
          Length = 398

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 85/219 (38%), Gaps = 28/219 (12%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI------- 548
            L   GFR       R L            +VVSAT     L+     + + +       
Sbjct: 177 ELLNRGFREQIYDVYRYLPP------ATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRD 230

Query: 549 -IRPTGLVDPPVEIRSARTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
            +   G+    + +     + +   D+YD + +      + ++   T+R  + LT+ + E
Sbjct: 231 ELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTIT-----QAVIFCNTRRKVDWLTDKMRE 285

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            N  V  MH E+   ER  I++D R G   VL+  ++   G+D+ +  LV   D      
Sbjct: 286 ANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYD-----L 340

Query: 665 LRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
             ++ + I  IGR+ R     V I +  +    I   I+
Sbjct: 341 PTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIE 379


>gi|262164855|ref|ZP_06032593.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
 gi|262027235|gb|EEY45902.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
          Length = 643

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTR 706
              I+  TR
Sbjct: 357 LRTIERVTR 365


>gi|110760457|ref|XP_391829.3| PREDICTED: putative ATP-dependent RNA helicase Pl10 [Apis
           mellifera]
          Length = 701

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           VE    R+ + D+    N +        L+ V TK+ A+ L EYL++    V  +H +  
Sbjct: 460 VEEHDKRSYLLDLLQASNFSDPSAESLTLVFVETKKGADMLEEYLHQMGYPVTSIHGDRT 519

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + +R  R GK  +LV   +   GLDIP    V   D             +  IGR
Sbjct: 520 QREREDALRRFRAGKAPILVATAVAARGLDIPHVKHVINFD-----LPGDVEEYVHRIGR 574

Query: 678 AARNVNSK 685
             R  N  
Sbjct: 575 TGRMGNLG 582


>gi|159482639|ref|XP_001699375.1| eukaryotic initiation factor [Chlamydomonas reinhardtii]
 gi|158272826|gb|EDO98621.1| eukaryotic initiation factor [Chlamydomonas reinhardtii]
          Length = 392

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 78/193 (40%), Gaps = 22/193 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              ++VSAT  +  LE     + + I        +   G+    V +     + +   D+
Sbjct: 193 TQVVLVSATLPAEVLEMTNKFMTDPIRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 252

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TKR  + LTE + + N  V  MH ++   ER  I+ + R G
Sbjct: 253 YDTLTIT-----QAVIFCNTKRKVDWLTEKMRQNNFTVASMHGDMVQKEREAIMGEFRSG 307

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
              VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I + 
Sbjct: 308 AARVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFV 362

Query: 691 DTITKSIQLAIDE 703
                 I   I++
Sbjct: 363 RNDDIRILRDIEQ 375


>gi|50554139|ref|XP_504478.1| YALI0E27715p [Yarrowia lipolytica]
 gi|74659776|sp|Q6C4D4|DBP2_YARLI RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49650347|emb|CAG80081.1| YALI0E27715p [Yarrowia lipolytica]
          Length = 552

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 80/209 (38%), Gaps = 21/209 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T++ SAT            + +QI    G ++          VE+ +   + + +   +
Sbjct: 296 QTLMWSATWPKEVQRLAHDYLKDQIQVNIGSLELSASHNITQVVEVCTEYEKRDRLVKHL 355

Query: 576 NLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               +    + L+   TKR+A+D+T++L +       +H + +  ER  ++ + R GK  
Sbjct: 356 ETVMENKESKCLIFTGTKRVADDITKFLRQDGWPALAIHGDKQQQERDWVLNEFRQGKSP 415

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           ++V  ++   G+D+     V   D     +  +    +  IGR  R        Y     
Sbjct: 416 IMVATDVASRGIDVKGINFVINYD-----YPSNSEDYVHRIGRTGRAGTKGTA-YTYFTE 469

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            + + A      R    +    K +I+P+
Sbjct: 470 DNRKQA------RDLLVILREAKQHIDPK 492


>gi|302819961|ref|XP_002991649.1| hypothetical protein SELMODRAFT_236355 [Selaginella moellendorffii]
 gi|300140498|gb|EFJ07220.1| hypothetical protein SELMODRAFT_236355 [Selaginella moellendorffii]
          Length = 585

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      ++    F+ +   R  T++ SAT         +  +V+ ++   G  
Sbjct: 307 RLIDLGFE-----EDIREVFDHFKAQR-QTLLFSATMPKKIQNFAKSALVKPVVVNVGRA 360

Query: 555 ----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + Q   +   +    +    +L+    K   +D+ EYL  + +   
Sbjct: 361 GAANLDVIQEVEYVK-QEAKIVYLLECLQKTPPPVLIFCENKSDVDDIHEYLLVKGVGAV 419

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER   I   + GK DVLV  ++  +GLD P+   V   D   E  + +   
Sbjct: 420 AIHGGKDQEEREYAIASFKQGKKDVLVATDIASKGLDFPDIQHVINYDMPAE--IENYVH 477

Query: 671 LIQTIGRAARNVNSKVI---LYADTITKSIQLAIDETTRR 707
            I   GR  +   +        ++TI   ++  + E  +R
Sbjct: 478 RIGRTGRCGKTGIATSFINKNQSETILLDLKHLLKEARQR 517


>gi|296387524|ref|ZP_06876999.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 449

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 99/284 (34%), Gaps = 46/284 (16%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +           ++ V   Q+  +   +  R     + GF      +   L   
Sbjct: 131 TPGRLLD--------LYRQNAVKFAQLQALVLDEADRM---LDLGF----ARELDELFAA 175

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
                +  T++ SAT             +  + R        +E+    T  + V   + 
Sbjct: 176 L--PRKRQTLLFSAT---------FSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLV 224

Query: 577 LAAQQG--------------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
              ++                + L+   T++  E+L   L  + I    +H +     R+
Sbjct: 225 PVDKKRKAELFCHLLQTNRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARL 284

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             ++  + G+ D+LV  ++   GLDI E  LV   D             I   GRA  + 
Sbjct: 285 RALQRFKAGEVDLLVATDVAARGLDIEEMPLVVNFDLPIV--AEDYVHRIGRTGRAGASG 342

Query: 683 NSKVILYADTIT--KSIQLAIDETTRRREKQLEHNKKHNINPQS 724
            +  ++ AD +    +I+  I +T +RRE + +   +H   PQ+
Sbjct: 343 QAVSLVCADEVELLAAIETLIGQTLQRRE-EPDFEPEHR-VPQT 384


>gi|262174005|ref|ZP_06041682.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
 gi|261891363|gb|EEY37350.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
          Length = 643

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTR 706
              I+  TR
Sbjct: 357 LRTIERVTR 365


>gi|115375095|ref|ZP_01462364.1| superfamily II DNA and RNA helicase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310825404|ref|YP_003957762.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|115367933|gb|EAU66899.1| superfamily II DNA and RNA helicase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309398476|gb|ADO75935.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 421

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 85/237 (35%), Gaps = 18/237 (7%)

Query: 478 VTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537
           VT PQ+  +   +  R     + GF+       + L        R  T++ SAT G    
Sbjct: 140 VTFPQLEALVLDEADRM---LDMGFQFQIETILKALP------RRRQTLLFSATLGPDVT 190

Query: 538 EQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL-RILLTVLTKR 593
              +  + + +   +  +G      E R    + E+    +    ++     L+   TK 
Sbjct: 191 RFARDRLYQPVRVEVTRSGTPAERAEQRLYSVKAEEKSALLLTLMRKNEGTALIFTRTKE 250

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ + + L         +H++    +R + +   R G    LV  ++   GLD+ + G 
Sbjct: 251 RADKVHKALQRAGYPCDVLHADRTQSQRKQALDAFRQGTCRCLVATDIAARGLDVEDVGH 310

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
           V   D        +    +  IGR AR   S V     T   +  LA  E+  R + 
Sbjct: 311 VINYD-----LPHAPEDYVHRIGRTARAQASGVATTFATPKDAPTLARIESIMRTKV 362


>gi|114149265|sp|Q3MSQ8|DDX4_RANLE RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog
 gi|76253272|emb|CAH56439.1| DEAD box protein [Rana lessonae]
          Length = 724

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 90/257 (35%), Gaps = 39/257 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR-----------LP 505
            P  L +         + +  + + ++  +   +  R     + GFR           +P
Sbjct: 420 TPGRLLD--------VIRKEKIGLTKLRYLVLDEADRM---LDMGFREDIENLLKSSGMP 468

Query: 506 SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ--GIIVEQIIRPTGLVDPPVEIRS 563
           S  + + L F         T   S    + E+ +     ++V Q+      V+  V    
Sbjct: 469 SKEERQTLMFSA-------TFPSSIQSLAREILKPDYLFVVVGQVGGACSDVEQMVIEVD 521

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              + + + + +        R ++ V TK+ A+ +  +L +  +    +H + +  ER  
Sbjct: 522 EFGKKDKLMEILQEIGS--ERTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQKERET 579

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +RD R G+  V+V  ++   GLDI     V   D             +  IGR  R  N
Sbjct: 580 ALRDFRTGQCPVIVATSVAARGLDIENVSYVINFD-----IPDDIDEYVHRIGRTGRCGN 634

Query: 684 SK-VILYADTITKSIQL 699
           +   I + D      Q 
Sbjct: 635 TGRAISFFDKRGDDEQR 651


>gi|328869570|gb|EGG17948.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum]
          Length = 631

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 78/206 (37%), Gaps = 17/206 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      D+     + +   R  T++ SAT         +  +V  +    G  
Sbjct: 353 RLIDLGFE-----DDIRTVMDYFQGQR-QTLLFSATMPKKIQTFARSALVRPVEVNVGRA 406

Query: 555 ----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + Q   +   +    +    +L+    K+  +D+ EYL  + +   
Sbjct: 407 GAANLDVIQEVEYVK-QESKIVYLLECLQKTAPPVLIFCENKKDVDDIHEYLLLKQVEAV 465

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H +    ER   I+  + GK DVLV  ++  +GLD P+   V   D  KE       +
Sbjct: 466 AVHGDKSQEERDTAIKAFKDGKKDVLVATDVASKGLDFPDIQHVINFDMPKE-----IEN 520

Query: 671 LIQTIGRAARNVNSKVILYADTITKS 696
            I  IGR  R   + V        +S
Sbjct: 521 YIHRIGRTGRCGKTGVATTFINKNQS 546


>gi|39104462|dbj|BAD04052.1| vasa homologue [Leucopsarion petersii]
          Length = 645

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 9/146 (6%)

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           T +    VE+     + E + + +        R ++ V TKR+A+ +  +L +  +    
Sbjct: 435 TDVNQEFVEVTKFD-KREKLLELLKTTGTD--RTMVFVETKRLADFIAAFLCQEKVPTTS 491

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +H   +  ER + + D R GK  VLV  ++   GLDIP+   V   D        +    
Sbjct: 492 IHGGREQREREQALGDFRSGKCPVLVATSVAARGLDIPDVQNVVNFD-----LPNNIDEY 546

Query: 672 IQTIGRAARNVN-SKVILYADTITKS 696
           +  IGR  R  N  + + + D    S
Sbjct: 547 VHRIGRTGRCGNLGRAVSFFDPDNDS 572


>gi|326482079|gb|EGE06089.1| ATP-dependent RNA helicase DED1 [Trichophyton equinum CBS 127.97]
          Length = 680

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ L+E+L  ++     +H +    ER   +   R G+  +LV   +   
Sbjct: 465 TLIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAAR 524

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           GLDIP    V   D             +  IGR  R  N+ +
Sbjct: 525 GLDIPNVTHVVNYD-----LPTDIDDYVHRIGRTGRAGNTGI 561


>gi|327304303|ref|XP_003236843.1| ATP-dependent RNA helicase DED1 [Trichophyton rubrum CBS 118892]
 gi|326459841|gb|EGD85294.1| ATP-dependent RNA helicase DED1 [Trichophyton rubrum CBS 118892]
          Length = 678

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ L+E+L  ++     +H +    ER   +   R G+  +LV   +   
Sbjct: 463 TLIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAAR 522

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           GLDIP    V   D             +  IGR  R  N+ +
Sbjct: 523 GLDIPNVTHVVNYD-----LPTDIDDYVHRIGRTGRAGNTGI 559


>gi|302854756|ref|XP_002958883.1| eukaryotic initiation factor [Volvox carteri f. nagariensis]
 gi|300255785|gb|EFJ40071.1| eukaryotic initiation factor [Volvox carteri f. nagariensis]
          Length = 400

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 78/193 (40%), Gaps = 22/193 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              ++VSAT  +  LE     + + I        +   G+    V +     + +   D+
Sbjct: 201 TQVVLVSATLPAEVLEMTNKFMTDPIRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 260

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TKR  + LTE + + N  V  MH ++   ER  I+ + R G
Sbjct: 261 YDTLTIT-----QAVIFCNTKRKVDWLTEKMRQNNFTVASMHGDMVQKEREAIMGEFRSG 315

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
              VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I + 
Sbjct: 316 AARVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFV 370

Query: 691 DTITKSIQLAIDE 703
                 I   I++
Sbjct: 371 RNDDIRILRDIEQ 383


>gi|302662748|ref|XP_003023025.1| hypothetical protein TRV_02846 [Trichophyton verrucosum HKI 0517]
 gi|291187001|gb|EFE42407.1| hypothetical protein TRV_02846 [Trichophyton verrucosum HKI 0517]
          Length = 677

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ L+E+L  ++     +H +    ER   +   R G+  +LV   +   
Sbjct: 462 TLIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAAR 521

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           GLDIP    V   D             +  IGR  R  N+ +
Sbjct: 522 GLDIPNVTHVVNYD-----LPTDIDDYVHRIGRTGRAGNTGI 558


>gi|302501664|ref|XP_003012824.1| hypothetical protein ARB_01075 [Arthroderma benhamiae CBS 112371]
 gi|291176384|gb|EFE32184.1| hypothetical protein ARB_01075 [Arthroderma benhamiae CBS 112371]
          Length = 677

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ L+E+L  ++     +H +    ER   +   R G+  +LV   +   
Sbjct: 462 TLIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAAR 521

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           GLDIP    V   D             +  IGR  R  N+ +
Sbjct: 522 GLDIPNVTHVVNYD-----LPTDIDDYVHRIGRTGRAGNTGI 558


>gi|296807019|ref|XP_002844169.1| ATP-dependent RNA helicase DED1 [Arthroderma otae CBS 113480]
 gi|238843652|gb|EEQ33314.1| ATP-dependent RNA helicase DED1 [Arthroderma otae CBS 113480]
          Length = 680

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ L+E+L  ++     +H +    ER   +   R G+  +LV   +   
Sbjct: 461 TLIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAAR 520

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           GLDIP    V   D             +  IGR  R  N+ +
Sbjct: 521 GLDIPNVTHVVNYD-----LPTDIDDYVHRIGRTGRAGNTGI 557


>gi|297828586|ref|XP_002882175.1| hypothetical protein ARALYDRAFT_477362 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328015|gb|EFH58434.1| hypothetical protein ARALYDRAFT_477362 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 625

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 14/183 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           +  T++ +AT      +    ++V       G VD  V  +S    +E V         +
Sbjct: 341 KRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLE 400

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  + + G ++++   TKRM + LT  L  R      +H +    ER  ++   R G+ 
Sbjct: 401 QILRSQEPGSKVIIFCSTKRMCDQLTRNLT-RQFGAAAIHGDKSQPERDNVLNQFRSGRT 459

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VLV  ++   GLD+ +   V   D     F       +  IGR  R   +         
Sbjct: 460 PVLVATDVAARGLDVKDIRAVVNYD-----FPNGVEDYVHRIGRTGRAGATGQAFTFFGD 514

Query: 694 TKS 696
             S
Sbjct: 515 QDS 517


>gi|294884821|gb|ADF47423.1| eukaryotic initiation factor-4A3 [Dugesia japonica]
          Length = 399

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 74/190 (38%), Gaps = 16/190 (8%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDE 574
              I++SAT     LE     +   I        +   G+    V +     + + + D 
Sbjct: 199 TQVILISATLPHDILEMTSKFMTNPIRILVKRDELTLEGIKQYFVSVEREEWKFDTLCDI 258

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            +       ++++   TKR  E LTE + E N  V  +H ++   ER EI R  R  +  
Sbjct: 259 YDTVTVT--QVVIFCNTKRKVEWLTEKMRENNFPVSSIHGDMPQGERDEITRQFRALETR 316

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           VL+  ++   G+D+    LV   D        ++   I  IGR+ R     V I +  + 
Sbjct: 317 VLITTDVWARGIDVQHVSLVINYD-----LPNNRELYIHRIGRSGRYGRKGVAINFVKSD 371

Query: 694 TKSIQLAIDE 703
              I   I++
Sbjct: 372 DVRILRDIEQ 381


>gi|225464928|ref|XP_002275011.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 412

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 72/183 (39%), Gaps = 21/183 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             +++SAT  +  LE     + + +        +   G+    V +     + +   D+Y
Sbjct: 214 QVVLISATLPNEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 273

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R G 
Sbjct: 274 DTLTIT-----QAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRSGT 328

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V +    
Sbjct: 329 TRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVK 383

Query: 693 ITK 695
              
Sbjct: 384 TDD 386


>gi|195338535|ref|XP_002035880.1| GM15916 [Drosophila sechellia]
 gi|194129760|gb|EDW51803.1| GM15916 [Drosophila sechellia]
          Length = 681

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 83/249 (33%), Gaps = 33/249 (13%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           L ++        VD + VT      +   +  R     + GF        R L       
Sbjct: 399 LLDF--------VDRAFVTFEDTRFVVLDEADRM---LDMGF----SEGMRKLMTHVTMR 443

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV--------DPPVEIRSARTQVEDVY 572
            +  T++ SAT            +   +    G+V            E+ S   +   + 
Sbjct: 444 PQHQTLMFSATFPEDIQRLAGEFLNNYVFVAIGMVGGACSDVKQTIYEV-SKFNKRAKLM 502

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           + +   A      ++ V TKR A+ L  YL E       +H +    +R + +RD + G 
Sbjct: 503 EILREEADG---TIVFVETKRGADFLASYLSETEFPTTSIHGDRLQSQREQALRDFKNGS 559

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
             VL+  ++   GLDI     V   D  K     +    +  IGR  R  N+     + D
Sbjct: 560 MKVLIATSVASRGLDIKNIKHVINYDMPK-----NIDDYVHRIGRTGRVGNNGRATTFFD 614

Query: 692 TITKSIQLA 700
                +  A
Sbjct: 615 PDQDRVIAA 623


>gi|496902|emb|CAA56074.1| translation initiation factor [Homo sapiens]
          Length = 411

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 211 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 270

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 271 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 325

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ +     V I +
Sbjct: 326 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGQYGRKGVAINF 380

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 381 VKNDDIRILRDIEQ 394


>gi|62857657|ref|NP_001016781.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Xenopus (Silurana)
           tropicalis]
          Length = 609

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 76/197 (38%), Gaps = 23/197 (11%)

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
            V    G+ EL       + QI+      +          ++  + +EI   A++  + +
Sbjct: 285 YVQINIGNLEL--SANHNILQIVDVCQESEK-------DHKLIQLMEEIM--AEKENKTI 333

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           + V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+  ++   GL
Sbjct: 334 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQQERDWVLCEFRTGKAPILIATDVASRGL 393

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           D+ +   V   D     +  S    +  IGR AR+ N        T   +++ A      
Sbjct: 394 DVEDIKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLKQA------ 441

Query: 707 RREKQLEHNKKHNINPQ 723
           R   ++       INP+
Sbjct: 442 RELVKVLEEANQTINPK 458


>gi|289617636|emb|CBI61359.1| unnamed protein product [Sordaria macrospora]
          Length = 317

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 116 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCD 175

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R 
Sbjct: 176 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQ 230

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 231 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 285

Query: 691 DTITK 695
            T   
Sbjct: 286 VTSED 290


>gi|91225696|ref|ZP_01260725.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01]
 gi|269966740|ref|ZP_06180817.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B]
 gi|91189585|gb|EAS75860.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01]
 gi|269828663|gb|EEZ82920.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B]
          Length = 643

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 24/192 (12%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-DPILLEDAATTNISIDAQQLSLS 756
              I+  T                 +S  E+I   + D +     A     ++A++   +
Sbjct: 357 LRTIERVT-----------------KSSMEEIQLPLRDQVAEARLAKLGAELEAEKEHKA 399

Query: 757 KKKGKAHLKSLR 768
             K    ++ L+
Sbjct: 400 LDKFAELVEKLQ 411


>gi|255955551|ref|XP_002568528.1| Pc21g15180 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590239|emb|CAP96415.1| Pc21g15180 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 416

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 84/219 (38%), Gaps = 28/219 (12%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI------- 548
            L   GFR       R L            +VVSAT     L+     + + +       
Sbjct: 178 ELLNRGFREQIYDVYRYLPP------ATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRD 231

Query: 549 -IRPTGLVDPPVEIRSARTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
            +   G+    + +     + +   D+YD + +      + ++   T+R  + L + + E
Sbjct: 232 ELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTIT-----QAVIFCNTRRKVDWLADKMRE 286

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            N  V  MH E+   ER  I++D R G   VL+  ++   G+D+ +  LV   D      
Sbjct: 287 ANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYD-----L 341

Query: 665 LRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
             ++ + I  IGR+ R     V I +  +    I   I+
Sbjct: 342 PTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIE 380


>gi|190405005|gb|EDV08272.1| eukaryotic initiation factor 4A-12 [Saccharomyces cerevisiae
           RM11-1a]
          Length = 399

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 33/223 (14%)

Query: 515 FEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSA 564
           ++ +  L      +VVSAT     LE  +  + + +        I   G+    V +   
Sbjct: 190 YDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKE 249

Query: 565 RTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
             + +   D+YD + +      + ++   TK+  + L++ L + N  V  MH ++K  ER
Sbjct: 250 EWKFDTLCDIYDSLTIT-----QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEER 304

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            +++ D R G   VL+  ++   G+D+ +  LV   D           + I  IGR+ R 
Sbjct: 305 DKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYD-----LPEIIENYIHRIGRSGRF 359

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
               V +   T     +L        RE +  +  K  INP  
Sbjct: 360 GRKGVAINFITKADLAKL--------REIEKFYCIK--INPMP 392


>gi|294776591|ref|ZP_06742061.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
 gi|294449579|gb|EFG18109.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
          Length = 425

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 28/193 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       E+II+   +     ++   ++  +D
Sbjct: 182 QTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKIIQTAYICYERQKLGIIQSLFQD 241

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                    Q   R+++   +K   +++T+      + V  MHS+++  +R +I+R+ + 
Sbjct: 242 ---------QTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKS 292

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILY 689
           G+ ++L+  +++  G+DI +  LV   D             +  IGR AR N +   I +
Sbjct: 293 GRINILIATDIVSRGIDIDDIRLVINYDV-----PHDSEDYVHRIGRTARANHDGCAITF 347

Query: 690 ADTITKSIQLAID 702
                +    AI+
Sbjct: 348 VSEKEQPQFKAIE 360


>gi|150005667|ref|YP_001300411.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
 gi|149934091|gb|ABR40789.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
          Length = 425

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 81/193 (41%), Gaps = 28/193 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       E+II+   +     ++   ++  +D
Sbjct: 182 QTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKIIQTAYICYERQKLGIIQSLFQD 241

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                    Q   R+++   +K   +++T+      + V  MHS+++  +R +I+R+ + 
Sbjct: 242 ---------QTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKS 292

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILY 689
           G+ ++L+  +++  G+DI +  LV   D             +  IGR AR N +   I +
Sbjct: 293 GRINILIATDIVSRGIDIDDIRLVINYDV-----PHDSEDYVHRIGRTARANHDGCAITF 347

Query: 690 ADTITKSIQLAID 702
                ++   AI+
Sbjct: 348 VSEKEQTQFKAIE 360


>gi|50294444|ref|XP_449633.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661035|sp|Q6FJG1|FAL1_CANGA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49528947|emb|CAG62609.1| unnamed protein product [Candida glabrata]
          Length = 399

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 81/202 (40%), Gaps = 24/202 (11%)

Query: 515 FEEWNCL--RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSA 564
           ++ +  L      +VVSAT     LE  +  + + +        I   G+    V +   
Sbjct: 190 YDIFTKLPRTSQVVVVSATMSPEILEITKKFMNDPVKILVKRDEITLEGIKQYYVNVEKE 249

Query: 565 RTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
             + +   D+YD + +      + ++   +K+  + L   L + N  V  MH ++K  ER
Sbjct: 250 EWKFDTLCDIYDSLTIT-----QCVIFCNSKKKVDWLAHKLKQSNFAVISMHGDMKQDER 304

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             ++ + R G+  VL+  ++   G+D+ +  LV   D           + +  IGR+ R 
Sbjct: 305 DRVMNEFRTGQSRVLISTDVWARGIDVQQVSLVINYD-----LPEITENYVHRIGRSGRF 359

Query: 682 VNSKV-ILYADTITKSIQLAID 702
               V I +   I  S    I+
Sbjct: 360 GRKGVAINFLTKIDASRMKEIE 381


>gi|153827325|ref|ZP_01979992.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2]
 gi|262169080|ref|ZP_06036773.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27]
 gi|262190964|ref|ZP_06049177.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93]
 gi|149738767|gb|EDM53109.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2]
 gi|262022361|gb|EEY41069.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27]
 gi|262033168|gb|EEY51693.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93]
          Length = 643

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVYNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTR 706
              I+  TR
Sbjct: 357 LRTIERVTR 365


>gi|158796|gb|AAA29013.1| Mab4611 antigen (vasa) [Drosophila melanogaster]
          Length = 648

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 84/254 (33%), Gaps = 32/254 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++        VD + +T      +   +  R     + GF      D R +   
Sbjct: 362 TPGRLLDF--------VDRTFITFEDTRFVVLDEADRM---LDMGF----SEDMRRIMTH 406

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV--------DPPVEIRSARTQV 568
                   T++ SAT            +   +    G+V            E+     + 
Sbjct: 407 VTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRS 466

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +     I + ++Q    ++ V TKR A+ L  +L E+      +H +    +R + +RD 
Sbjct: 467 K----LIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDF 522

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G   VL+  ++   GLDI     V   D             +  IGR  R  N+    
Sbjct: 523 KNGSMKVLIATSVASRGLDIKNIKHVINYD-----MPSKIDDYVHRIGRTGRVGNNGRAT 577

Query: 689 YADTITKSIQLAID 702
                 K   +A D
Sbjct: 578 SFFHPEKDRAIAAD 591


>gi|85103782|ref|XP_961600.1| eukaryotic initiation factor 4A-12 [Neurospora crassa OR74A]
 gi|74625334|sp|Q9P735|FAL1_NEUCR RecName: Full=ATP-dependent RNA helicase fal-1
 gi|16415977|emb|CAB88547.2| probable translation initiation factor eIF-4A [Neurospora crassa]
 gi|28923147|gb|EAA32364.1| eukaryotic initiation factor 4A-12 [Neurospora crassa OR74A]
          Length = 400

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 199 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCD 258

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R 
Sbjct: 259 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQ 313

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 314 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 368

Query: 691 DTITK 695
            T   
Sbjct: 369 VTSED 373


>gi|295394794|ref|ZP_06805009.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972390|gb|EFG48250.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 586

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TK+  E+L + L  R      ++ ++  + R   +  LR G  D+LV  ++   
Sbjct: 258 IIMFVRTKQETEELADKLKARGFSAAAINGDIPQVVRERTVEALRSGSIDILVATDVAAR 317

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+    LV   D           S +  IGR  R   +   IL+       +  AI++
Sbjct: 318 GLDVERISLVVNFD-----IPHDTESYVHRIGRTGRAGRTGEAILFVTPRENRLLKAIEK 372

Query: 704 TTRRR 708
            TR++
Sbjct: 373 ATRQK 377


>gi|99034182|ref|ZP_01314264.1| hypothetical protein Wendoof_01000940 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 60

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIV 198
           FQ+ T + P+GDQP AI  L+ G++S ++ Q+LLGVTGSGKTFTMA VI    RPA++
Sbjct: 3   FQITTHFQPAGDQPQAIDSLIAGLNSNKRDQVLLGVTGSGKTFTMANVIARTNRPALI 60


>gi|322703781|gb|EFY95385.1| ATP-dependent RNA helicase ded-1 [Metarhizium anisopliae ARSEF 23]
          Length = 665

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 14/172 (8%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   +      L+    + V ++   +  +   VE      +   + D ++
Sbjct: 372 QTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEFVEDIDKRSVLLDILH 431

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G   L+ V TKRMA+ L+++L  ++     +H +    ER   +   R G+  +L
Sbjct: 432 --THAGGLTLIFVETKRMADSLSDFLINQSFPATSIHGDRTQRERERALEFFRNGRCPIL 489

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V   +   GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 490 VATAVAARGLDIPNVTHVINYD-----LPTDVDDYVHRIGRTGRAGNTGIAT 536


>gi|322696164|gb|EFY87960.1| ATP-dependent RNA helicase DED1 [Metarhizium acridum CQMa 102]
          Length = 666

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 14/172 (8%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   +      L+    + V ++   +  +   VE      +   + D ++
Sbjct: 378 QTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEFVEDIDKRSVLLDILH 437

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G   L+ V TKRMA+ L+++L  ++     +H +    ER   +   R G+  +L
Sbjct: 438 --THAGGLTLIFVETKRMADSLSDFLINQSFPATSIHGDRTQRERERALEFFRNGRCPIL 495

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V   +   GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 496 VATAVAARGLDIPNVTHVINYD-----LPTDVDDYVHRIGRTGRAGNTGIAT 542


>gi|189520693|ref|XP_001923830.1| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Danio rerio]
          Length = 671

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 23/197 (11%)

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
            V    G+ EL       + QI+      +          ++  + +EI   A++  + +
Sbjct: 298 YVQINIGALEL--SANHNILQIVDVCMENEK-------DNKLIQLMEEIM--AEKENKTI 346

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           + V TK+  ++LT  +         +H +    ER  ++ + R GK  +L+  ++   GL
Sbjct: 347 IFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGL 406

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           D+ +   V   D     +  S    +  IGR AR+ N        T   +++ A      
Sbjct: 407 DVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLRQA------ 454

Query: 707 RREKQLEHNKKHNINPQ 723
           R   ++    +  INP+
Sbjct: 455 RDLVRVLEEARQAINPK 471


>gi|332703850|ref|ZP_08423938.1| transcription-repair coupling factor [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553999|gb|EGJ51043.1| transcription-repair coupling factor [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 1158

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 54/344 (15%), Positives = 108/344 (31%), Gaps = 43/344 (12%)

Query: 265 SLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           +L  +   ++++  + +    + +      + L+ G+ +  + +L       Y+R+ +  
Sbjct: 107 ALGGKGRGVILTVDNLLAKWPAPKVADLATMALRQGEDISPEMILEQAAAWGYRREGMVT 166

Query: 325 IRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
             G   + GD ++IF P +  D   R+  FG+ +E+I  F P + +   +++   +   +
Sbjct: 167 APGEMAMRGDILDIFAPGY--DQPLRLEFFGDTLEQIRLFDPSSQRSRADLKEATVLPVA 224

Query: 384 HYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIE 443
             V        AM Y           L+  G++ E  R           LE         
Sbjct: 225 PAVLAGAHPAEAMSY--------WDHLKTTGQINELVR-----DELRRKLEGHSGFIFPG 271

Query: 444 NYSRYLTGRNPGEPPPTLFEYIPEDSLLFVD---ESHVTIPQISGMYRGD---FHRKATL 497
            Y               L  Y  EDS+  +    E    + +    ++       R    
Sbjct: 272 LYYP---------KAVNLKSYFAEDSIYLLSGATELRSRVEEAHWAWQEFLDGRKRDKRQ 322

Query: 498 AEYGFRL--PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
              G  L  P   + R +  E    L    ++     G    E+      +   +P    
Sbjct: 323 VVAGSTLIWPEA-EARKVWTESRQVLFEDLVLGQKKDGLDLPEKSLEQFTDLFWQPEQRN 381

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
                 R     V+ + D           IL     +   + LT
Sbjct: 382 ------RPWSALVKALQDW---RTSSRQTILSFHTERTRKKFLT 416



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 7/173 (4%)

Query: 528 VSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
           ++ATP    L+    GI    +I    +   PVE        E +   +    ++G +I 
Sbjct: 763 LTATPIPRTLQLSLSGIRGLSVIETPPVDRKPVETALVERDAEMLKTILAREMERGGQIF 822

Query: 587 LTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
                     +  +Y+ +     R  + H ++   +  E I     G+ D+LV   ++  
Sbjct: 823 WVHNRVHSLAEAEDYVRKLAPDARIGHAHGQMPERQLEETIHKFWHGELDILVCTAIIES 882

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           GLD P    + +  A   G  +    L Q  GR  R+       +      S+
Sbjct: 883 GLDFPNANTMVVDQAHMFGLGQ----LYQLRGRVGRSDRQAYAYFVVPSLDSL 931


>gi|307548813|dbj|BAJ19133.1| vasa [Misgurnus anguillicaudatus]
          Length = 644

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 11/136 (8%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V   S R Q+ ++            R ++ V TKR A+ +  +L +  I    +H + +
Sbjct: 434 QVTQFSKREQLLELL-----RTTGNERTMVFVGTKRSADFIATFLCQEKIPTTSIHGDRE 488

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + + D R G+  VLV  ++   GLDI     V   D        S    +  IGR
Sbjct: 489 QREREKALSDFRTGQCPVLVATSVAARGLDIEHVQHVVNFD-----LPSSIDEYVHRIGR 543

Query: 678 AARNVN-SKVILYADT 692
             R  N  + + + D 
Sbjct: 544 TGRCGNIGRAVSFFDP 559


>gi|291404256|ref|XP_002718616.1| PREDICTED: nucleolar protein GU2-like [Oryctolagus cuniculus]
          Length = 780

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 98/254 (38%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGII------VEQIIRPTGLVDPPVE---IRSARTQVEDVY- 572
           P T++ SAT   W     +  +      V+ I + T      VE   I+   +Q   V  
Sbjct: 367 PQTLLFSATCPHWVFNVAKKYMKATYEQVDLIGKKTQKTAITVEHLAIKCHWSQRAAVIG 426

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++         + +H ++   +R   ++  R G 
Sbjct: 427 DVIRVYSGHQGRTIVFCETKKEAQELSQ-NSSIKQDAQSLHGDIPQKQREITLKGFRNGD 485

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 486 FGVLVATNVAARGLDIPEVDLVVQSCPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 540

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QLA          Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 541 HKEEYQLA----------QVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 588

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 589 ISHFKQSAEKLIEE 602


>gi|156554534|ref|XP_001605420.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 775

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 20/193 (10%)

Query: 519 NCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEI---RSAR 565
             +RP    ++ SAT         +  + + I    G ++          +EI       
Sbjct: 284 EQIRPDRQVLMWSATWPKEVQALAEDFLTDYIQINIGSLNLAANHNIRQIIEICQEHEKE 343

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            ++  +  EI    ++G + ++ V TK+  +D+T+ +         +H +    ER  ++
Sbjct: 344 NKLAVLLREIGC--ERGNKTIIFVETKKKVDDITKAIKRNGWPAIAIHGDKSQPERDYVL 401

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            + R GK  +LV  ++   GLD+ +   V   D     +  S    I  IGR  R  ++ 
Sbjct: 402 SEFRNGKTAILVATDVAARGLDVEDVKYVVNFD-----YPNSSEDYIHRIGRTGRCQSAG 456

Query: 686 VILYADTITKSIQ 698
                 T   + Q
Sbjct: 457 TAYAYFTPNNARQ 469


>gi|120537661|gb|AAI29276.1| Vasa protein [Danio rerio]
          Length = 688

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 11/168 (6%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDV--YDEINL-- 577
            T++ SAT P   +      + V+ I    G+V     ++     QV+     D++    
Sbjct: 437 QTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQYSKRDQLLELL 496

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            A    R ++ V TKR A+ +  +L +  I    +H + +  ER + + D RLG+  VLV
Sbjct: 497 RATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGQCPVLV 556

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             ++   GLDI +   V   D        S    +  IGR  R  N+ 
Sbjct: 557 ATSVAARGLDIEQVQHVVNFD-----MPSSIDEYVHRIGRTGRCGNTG 599


>gi|19482136|gb|AAL89410.1|AF461759_1 vasa-like protein [Danio rerio]
          Length = 715

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 11/168 (6%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDV--YDEINL-- 577
            T++ SAT P   +      + V+ I    G+V     ++     QV+     D++    
Sbjct: 464 QTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQYSKRDQLLELL 523

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            A    R ++ V TKR A+ +  +L +  I    +H + +  ER + + D RLG+  VLV
Sbjct: 524 RATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGQCPVLV 583

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             ++   GLDI +   V   D        S    +  IGR  R  N+ 
Sbjct: 584 ATSVAARGLDIEQVQHVVNFD-----MPSSIDEYVHRIGRTGRCGNTG 626


>gi|51476855|emb|CAH18395.1| hypothetical protein [Homo sapiens]
 gi|119574692|gb|EAW54307.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_c [Homo
           sapiens]
 gi|123993911|gb|ABM84557.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
 gi|124000685|gb|ABM87851.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
 gi|189054973|dbj|BAG37957.1| unnamed protein product [Homo sapiens]
          Length = 715

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVY- 572
           P T++ SAT   W         +     V+ I + T      VE   I+   TQ   V  
Sbjct: 301 PQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIG 360

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++         + +H ++   +R   ++  R G 
Sbjct: 361 DVIRVYSGHQGRTIIFCETKKEAQELSQ-NSAIKQDAQSLHGDIPQKQREITLKGFRNGS 419

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 420 FGVLVATNVAARGLDIPEVDLVIQSSPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 474

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QL           Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 475 HKEEYQL----------VQVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 522

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 523 ISHFKQSAEKLIEE 536


>gi|332218194|ref|XP_003258244.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Nomascus leucogenys]
          Length = 715

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVY- 572
           P T++ SAT   W         +     V+ I + T      VE   I+   TQ   V  
Sbjct: 301 PQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIG 360

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++         + +H ++   +R   ++  R G 
Sbjct: 361 DVIRVYSGHQGRTIIFCETKKEAQELSQ-NSAIKQDAQSLHGDIPQKQREITLKGFRNGS 419

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 420 FGVLVATNVAARGLDIPEVDLVIQSSPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 474

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QL           Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 475 HKEEYQL----------VQVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 522

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 523 ISHFKQSAEKLIEE 536


>gi|328873234|gb|EGG21601.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           fasciculatum]
          Length = 418

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSAR---TQVED 570
               ++VSAT     +   +  + + +        +   G+    V +         + D
Sbjct: 217 ATQIVLVSATLTQDVVSMTERFMTDPVRILLKRDELTLEGIKQFFVSVEKEEWKFGTLCD 276

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TK   + LT  + E N  V  +H ++   ER EIIR  R 
Sbjct: 277 IYDSLTIT-----QAVIFCNTKSKVDALTNKMREANFTVASLHGDMDQKEREEIIRSFRS 331

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++L  G+D+ +  LV   D         + + I  IGR+ R     V I +
Sbjct: 332 GENRVLITTDILARGIDVQQVSLVINYD-----LPMDRENYIHRIGRSGRFGRKGVAINF 386

Query: 690 ADTITKSIQLAIDE 703
             +    I   I++
Sbjct: 387 VKSSDIRILRDIEQ 400


>gi|289617759|emb|CBI61482.1| unnamed protein product [Sordaria macrospora]
          Length = 648

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 14/172 (8%)

Query: 524 TTIVVSAT-PGSWEL---EQCQGIIVEQIIR---PTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   ++   +  +  I   + R    +  +   VE      +   + D ++
Sbjct: 415 QTLMFSATFPRDIQILARDFLKDYIFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILH 474

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G   L+ V TKRMA+ L+++L  +N     +H +    ER   +   R G+  +L
Sbjct: 475 --THAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPIL 532

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V   +   GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 533 VATAVAARGLDIPNVTHVINYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 579


>gi|261212543|ref|ZP_05926828.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
 gi|260838474|gb|EEX65130.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
          Length = 639

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTR 706
              I+  TR
Sbjct: 357 LRTIERVTR 365


>gi|294933513|ref|XP_002780743.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
 gi|239890799|gb|EER12538.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
          Length = 634

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 89/240 (37%), Gaps = 30/240 (12%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            ++E   T+ Q   +   +  R     + GF      D      + +   +  T++ SAT
Sbjct: 341 MLNEKMFTLAQCVYICLDEADRM---VDLGFE-----DEVRNTLDHF-GHQRQTLLFSAT 391

Query: 532 PGSWELEQCQGIIVEQIIRPTGL-------VDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
                 E     +V  +    G        V   VE   A +++  +   +   A     
Sbjct: 392 MPRKIQEFATSALVNPVTINVGRAGAANLDVVQEVEYVKAESKLTYLLQCLQKTAPP--- 448

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++    K   +++ EYL  + +    +H  ++  ER +  R  + G  DVL+G ++  +
Sbjct: 449 VMVFCSDKASCDEVLEYLLLKGVGACAIHGGLEQSERHKSTRLFKSGAKDVLIGTDVASK 508

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  KE       + +  IGR  R   + V          I  ++DET
Sbjct: 509 GLDFPAIQHVINYDMPKE-----IENYVHRIGRTGRCGRTGVATTF------INKSVDET 557


>gi|193212281|ref|YP_001998234.1| DEAD/DEAH box helicase domain-containing protein [Chlorobaculum
           parvum NCIB 8327]
 gi|193085758|gb|ACF11034.1| DEAD/DEAH box helicase domain protein [Chlorobaculum parvum NCIB
           8327]
          Length = 647

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 6/157 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TK    +L E L  R      ++ ++    R   I  L+ G  ++++  ++   
Sbjct: 259 IIIFVRTKTETVNLAEKLQARGYLAAALNGDMVQSARERTIEQLKDGTLNIVIATDVAAR 318

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     + +  AI+ 
Sbjct: 319 GLDVDRISHVINYD-----IPTDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLFAIER 373

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
            TR+R  ++E      +N + + +    + D I  ED
Sbjct: 374 ATRKRIDKMELPSTETVNDKRIAKFKQRITDTIAAED 410


>gi|327485805|gb|AEA80211.1| Cold-shock DEAD-box protein A [Vibrio cholerae LMA3894-4]
          Length = 644

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVYNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTR 706
              I+  TR
Sbjct: 357 LRTIERVTR 365


>gi|254884100|ref|ZP_05256810.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|319640865|ref|ZP_07995576.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
 gi|254836893|gb|EET17202.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|317387502|gb|EFV68370.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
          Length = 425

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 81/193 (41%), Gaps = 28/193 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       E+II+   +     ++   ++  +D
Sbjct: 182 QTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKIIQTAYICYERQKLGIIQSLFQD 241

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                    Q   R+++   +K   +++T+      + V  MHS+++  +R +I+R+ + 
Sbjct: 242 ---------QTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKS 292

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILY 689
           G+ ++L+  +++  G+DI +  LV   D             +  IGR AR N +   I +
Sbjct: 293 GRINILIATDIVSRGIDIDDIRLVINYDV-----PHDSEDYVHRIGRTARANHDGCAITF 347

Query: 690 ADTITKSIQLAID 702
                ++   AI+
Sbjct: 348 VSEKEQTQFKAIE 360


>gi|74625309|sp|Q9P6U9|DED1_NEUCR RecName: Full=ATP-dependent RNA helicase ded-1
 gi|7635831|emb|CAB88635.1| probable ATP-dependent RNA helicase DED1 [Neurospora crassa]
          Length = 688

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 5/110 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
              G   L+ V TKRMA+ L+++L  +N     +H +    ER   +   R G+  +LV 
Sbjct: 450 THAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVA 509

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             +   GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 510 TAVAARGLDIPNVTHVINYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 554


>gi|317504984|ref|ZP_07962932.1| transcription-repair coupling factor [Prevotella salivae DSM 15606]
 gi|315663866|gb|EFV03585.1| transcription-repair coupling factor [Prevotella salivae DSM 15606]
          Length = 1153

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 86/232 (37%), Gaps = 19/232 (8%)

Query: 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKN 215
           A+ +LL+   +R     L G   S      A V   +++  + +  +   A   Y +   
Sbjct: 18  ALCKLLQ--ENRGSNIFLQGQQASATPLLFAAVATEIKQTFLFVLQDADEAGYFYHDLTQ 75

Query: 216 FFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR----MRHSATRSLLERND 271
                 V +F S +          R+  Y +++S+   +I R     R SA  +    + 
Sbjct: 76  VMGTQNVLFFPSSFK---------RSVKYGQRDSA--NEILRTEVLARISARDNQATESL 124

Query: 272 CIVVSSVSCIYGIGSVESYSQMIVQLKI-GDSVEQKELLSSLVKQQYKRQDIGIIRGTFR 330
            I+    +    + S +   +  + LK     ++  ++   L +  ++  D     G + 
Sbjct: 125 LIISYPEALSELVVSKQHLDERRLSLKTGQQQIDITDIAHKLREYGFQEVDYVYEPGQYS 184

Query: 331 VCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
           V G  ++++    E+  +R+  FG +I+ I  F          +  I+I   
Sbjct: 185 VRGSILDVYSFSCEN-PFRIDFFGREIDTIRTFEVQDQLSKDKLNEIEIVPE 235



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     IIR       P+    A    E + D IN    +  
Sbjct: 736 TLTMSATPIPRTLQFSLMGARDMSIIRTPPPNRYPIHTELATFSHEVIADAINFEMSRNG 795

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          +++   +++     R    H ++   E  +++       +DVL+   +
Sbjct: 796 QVYFVHDRINGLQEIANLIHKYVPDCRIAIGHGQMPPEELEKVLMGFMNYDYDVLLSTTI 855

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + I DA + G     + L Q  GR  R+ N K   Y     KS   ++
Sbjct: 856 VENGIDISNANTMIINDAHRFGL----SDLHQMRGRVGRS-NRKAFCYLLAPPKS---SL 907

Query: 702 DETTRRREKQLEHNKKHN 719
               RRR + LE+  +  
Sbjct: 908 TPEARRRLEALENFSELG 925


>gi|90413445|ref|ZP_01221437.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90325533|gb|EAS42010.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 626

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 8/147 (5%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           ++    +    +     ++ V T++  E L ++L  R  +   +H ++    R   +  +
Sbjct: 233 DEAMIRMLETEENIDASIVFVRTRQDTERLADWLSSRGCKAAALHGDIPQSLRERTVDHI 292

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVI 687
           + G  DVLV  +++  GLD+     V   D   +       S I  IGR  R   S K I
Sbjct: 293 KRGVIDVLVATDVVARGLDVQRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRSGKAI 347

Query: 688 LYADTITKSIQLAIDETTRRR--EKQL 712
           L   T    +   I+  T+ R  E QL
Sbjct: 348 LLVRTNQIRMLRTIERVTKSRMEEIQL 374


>gi|224052119|ref|XP_002191015.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Taeniopygia guttata]
          Length = 589

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 99/269 (36%), Gaps = 42/269 (15%)

Query: 515 FEEWNCLRPTTIVVSATPGSW-----------ELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           ++  +   P T++ SAT   W           E EQ   I  +     T +    ++ RS
Sbjct: 197 YKRGSENNPQTLLFSATCPRWVYDVAKKYMRDEYEQIDLIGKKAQRTATTVEHLAIQCRS 256

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           ++ +   + D I + +    R ++   TK+ A +L           + +H ++   +R  
Sbjct: 257 SQ-RAGVLGDIIQVYSGSRGRTIVFCETKKEANELA-MNASLKQDAQSLHGDIPQKQREI 314

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            ++  R G F+VL+  N+   GLDIPE  LV      K+       S I   GR  R   
Sbjct: 315 TLKGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDV-----DSYIHRSGRTGRAGR 369

Query: 684 SKVILYADTITKSIQLAIDETTRRRE----KQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           + + +                 +RRE    KQ+EH  K  I  + V   +    D I   
Sbjct: 370 TGICICLF--------------QRREEDLLKQVEH--KAGITFKRVG--VPSATDVIKAS 411

Query: 740 DAATTNISIDAQQLSLS--KKKGKAHLKS 766
            +    +       ++   +K  +  +  
Sbjct: 412 SSDAKKLLEAVPPAAVDYFRKSAEELIDE 440


>gi|309364627|emb|CAP24933.2| CBR-VBH-1 protein [Caenorhabditis briggsae AF16]
          Length = 692

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 11/143 (7%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +++ D +       L +L+ V TKR A +L  +L  + IR   +H ++K +ER   +   
Sbjct: 425 QNLMDILMNEDATNL-VLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLEMF 483

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI- 687
           R G+F +LV   +   GLDIP    V   D             +  IGR  R  N  +  
Sbjct: 484 RSGQFPILVATAVAARGLDIPNVRHVVNYD-----LPGDSDEYVHRIGRTGRCGNLGIAT 538

Query: 688 -LYADT---ITKSIQLAIDETTR 706
             + D    I + ++  I E  +
Sbjct: 539 SFFNDKNRGIGRDLKTLIMEANQ 561


>gi|254444929|ref|ZP_05058405.1| transcription-repair coupling factor [Verrucomicrobiae bacterium
           DG1235]
 gi|198259237|gb|EDY83545.1| transcription-repair coupling factor [Verrucomicrobiae bacterium
           DG1235]
          Length = 1144

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 92/214 (42%), Gaps = 6/214 (2%)

Query: 168 EKVQLLLGVTGSGKTFTM-AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
           EK +  +GV        +   +  +  R   ++A N  LA QL ++   F      +   
Sbjct: 18  EKWEQYIGVGEEATAPILEDWIHSSKSRVLTIVAKNSRLAEQLNADLAYFHTQIRGDKTK 77

Query: 227 SYYDYYQPEAYVPR-TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG 285
           + + Y+  E  +    D+ +++  + +++I  +   A+         +V +  +    + 
Sbjct: 78  TRFLYFPEETELSEDEDSPVDRFETGSDRIAAL---ASIRQSNDQLVLVTTPRALAQAVP 134

Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
           +V++ +   + LK G +   ++L+  L    Y  + +    G F   G  I+++P    D
Sbjct: 135 AVDALTASQLVLKAGQTHPFEKLVEKLKSLDYDNEGLCEAPGQFARRGGLIDVYPISA-D 193

Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
             +R+  FG++I+ I E  P+T +     E+I I
Sbjct: 194 TPYRIDFFGDEIDAIKELDPVTQRSGAPTESIAI 227



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 84/214 (39%), Gaps = 24/214 (11%)

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD- 573
           F+EW       + +SATP    L        E  +  T     PVE +  +T V+   D 
Sbjct: 726 FKEWRSTVD-ILTMSATPIPRTLYMALTGARELSVIET----APVERKPIQTIVKSYDDA 780

Query: 574 ----EINLAAQQGLRILLT---VLTKR-MAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
                I     +G ++      V T   +A  L + L E +I V   H ++   +   ++
Sbjct: 781 LVSEVIRREIARGGQVFYLHNRVQTINTVAAKLEKMLPEVSIGVG--HGQMDEKKLENVM 838

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D    K+ VLV   ++  GLDIP C  + I  AD+ G L     L   +GR  R     
Sbjct: 839 LDFVNQKYQVLVCTTIIESGLDIPNCNTIIIEGADRFG-LSQLYQLRGRVGRFKRQA--- 894

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
              YA  +    +  +D   R+R   + H+ +  
Sbjct: 895 ---YAYLLLHKHKRLMD-VARKRLAAIRHHNQLG 924


>gi|195376137|ref|XP_002046853.1| GJ12262 [Drosophila virilis]
 gi|194154011|gb|EDW69195.1| GJ12262 [Drosophila virilis]
          Length = 778

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 70/187 (37%), Gaps = 21/187 (11%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           L       + QI+      +  V++    TQ+         + +   + ++ V TK+  +
Sbjct: 353 LSLSANHNILQIVDVCDESEKIVKLIQLLTQI---------SGENETKTIIFVETKKRVD 403

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           ++T  +  +  R   +H +    ER  ++   R G+  +LV  ++   GLD+ +   V  
Sbjct: 404 EITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVIN 463

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
            D     +  +    +  IGR  R+ N+    Y      +   A D        Q+    
Sbjct: 464 YD-----YPSNSEDYVHRIGRTGRSNNTGTA-YTLFTNSNANKAND------LIQVLREA 511

Query: 717 KHNINPQ 723
              INP+
Sbjct: 512 NQTINPK 518


>gi|268565781|ref|XP_002639546.1| C. briggsae CBR-VBH-1 protein [Caenorhabditis briggsae]
          Length = 638

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 11/143 (7%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +++ D +       L +L+ V TKR A +L  +L  + IR   +H ++K +ER   +   
Sbjct: 371 QNLMDILMNEDATNL-VLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLEMF 429

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI- 687
           R G+F +LV   +   GLDIP    V   D             +  IGR  R  N  +  
Sbjct: 430 RSGQFPILVATAVAARGLDIPNVRHVVNYD-----LPGDSDEYVHRIGRTGRCGNLGIAT 484

Query: 688 -LYADT---ITKSIQLAIDETTR 706
             + D    I + ++  I E  +
Sbjct: 485 SFFNDKNRGIGRDLKTLIMEANQ 507


>gi|125526364|gb|EAY74478.1| hypothetical protein OsI_02369 [Oryza sativa Indica Group]
          Length = 792

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 70/187 (37%), Gaps = 14/187 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           R  T++ +AT         + ++V  +    G VD  V   +    VE +         +
Sbjct: 327 RRQTLMYTATWPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLE 386

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  +   G ++L+   TKRM + L   L  R      +H +    ER +++   R G+ 
Sbjct: 387 QILRSQDSGSKVLIFCTTKRMCDQLARTLT-RQFGASAIHGDKSQSEREKVLSHFRSGRS 445

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDI +  +V         F       +  IGR  R   + V       
Sbjct: 446 PILVATDVAARGLDIKDIRVVINS-----PFPTGIEDYVHRIGRTGRAGATGVAYTFFCD 500

Query: 694 TKSIQLA 700
             S   A
Sbjct: 501 QDSKYAA 507


>gi|237710076|ref|ZP_04540557.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|237723636|ref|ZP_04554117.1| ATP-dependent RNA helicase [Bacteroides sp. D4]
 gi|265753725|ref|ZP_06089080.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
 gi|229437984|gb|EEO48061.1| ATP-dependent RNA helicase [Bacteroides dorei 5_1_36/D4]
 gi|229456169|gb|EEO61890.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|263235439|gb|EEZ20963.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
          Length = 423

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 81/193 (41%), Gaps = 28/193 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       E+II+   +     ++   ++  +D
Sbjct: 182 QTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKIIQTAYICYERQKLGIIQSLFQD 241

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                    Q   R+++   +K   +++T+      + V  MHS+++  +R +I+R+ + 
Sbjct: 242 ---------QTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKS 292

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILY 689
           G+ ++L+  +++  G+DI +  LV   D             +  IGR AR N +   I +
Sbjct: 293 GRINILIATDIVSRGIDIDDIRLVINYDV-----PHDSEDYVHRIGRTARANHDGCAITF 347

Query: 690 ADTITKSIQLAID 702
                ++   AI+
Sbjct: 348 VSEKEQTQFKAIE 360


>gi|119944643|ref|YP_942323.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119863247|gb|ABM02724.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 439

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 87/253 (34%), Gaps = 20/253 (7%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIR----SARTQVED 570
           N     T++ SAT G  E+ +    +++  +R            +  R        Q E 
Sbjct: 176 NHRLRQTLLFSATLGHAEVNEFASELLKAPVRIAIGEENQQHSEISQRFYLADNLNQKEK 235

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +        +     ++   T+  A+ L+  L E+      +H ++    R  I+     
Sbjct: 236 LLFHFIKNEEIKQ-AIIFTATRLDAQRLSAALSEKGYGTLALHGDLTQNNRNSIMDSFSR 294

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           GK  +LV  ++   GLD+     V   D  K          I  IGR  R       I  
Sbjct: 295 GKAQLLVTTDIASRGLDLLNVSHVINFDIPK-----HTEEYIHRIGRTGRAGEKGDAISI 349

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINP--QSVKEKIMEVIDPILLEDAATTNIS 747
                      ++E  +R   QL  N+   I P  + + EK+++  +  ++   A    S
Sbjct: 350 IGPKDWVNFKKVEEFVQR---QLTFNRVDGIKPQFKGIVEKVVKAPETKVVSHKAEKKQS 406

Query: 748 IDAQQLSLSKKKG 760
              ++   +  K 
Sbjct: 407 SKTRKPKAAPNKI 419


>gi|295660379|ref|XP_002790746.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226281299|gb|EEH36865.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 408

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 198 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCD 257

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 258 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 312

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 313 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 367

Query: 691 DTITK 695
            T   
Sbjct: 368 VTSED 372


>gi|2558535|emb|CAA72735.1| RNA helicase (DEAD box) [Danio rerio]
          Length = 700

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 11/170 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDV--YDEINL 577
           +  T++ SAT P   +      + V+ I    G+V     ++     QV+     D++  
Sbjct: 447 KRQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQYSKRDQLLE 506

Query: 578 --AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A    R ++ V TKR A+ +  +L +  I    +H + +  ER + + D RLG   V
Sbjct: 507 LLRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGHCPV 566

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           LV  ++   GLDI +   V   D        S    +  IGR  R  N+ 
Sbjct: 567 LVATSVAARGLDIEQVQHVVNFD-----MPSSIDEYVHRIGRTGRCGNTG 611


>gi|313229621|emb|CBY18436.1| unnamed protein product [Oikopleura dioica]
          Length = 962

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 87/257 (33%), Gaps = 46/257 (17%)

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT--------- 524
            E    I +   +  G   R     E G       + + L  +E + +            
Sbjct: 649 REQSQRIREGCNIVIGTPGRMKDFLEKGVI--DASEAQFLVLDEADRMLDQGFGPDIREI 706

Query: 525 -------------TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
                        T + SAT      E       +  +RP  +      I  A T V   
Sbjct: 707 NAYLPPKDTGKRTTALFSAT-----FETAIQSAAQDYLRPNYIFVAIGIIGGANTAVTQQ 761

Query: 572 YDEINLAAQ-----------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           ++++    +           QG R L+ V TK  A+ L   L    I+   +H + +  +
Sbjct: 762 FEQLQKREKFNRTVEICKQNQGKRTLIFVATKIFADSLGSMLVGDGIKATTIHGDRQQRD 821

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R + I DL+  +  VLV  ++   G+DI +  +V   D  KE       S I  IGR AR
Sbjct: 822 REQAINDLKANRMHVLVATDVAARGIDIDDVEVVINFDFPKE-----LESYIHRIGRTAR 876

Query: 681 NVNSK-VILYADTITKS 696
                  I + D +   
Sbjct: 877 KGKKGLAITFIDAMKDR 893


>gi|262396820|ref|YP_003288673.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25]
 gi|262340414|gb|ACY54208.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25]
          Length = 644

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 24/192 (12%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-DPILLEDAATTNISIDAQQLSLS 756
              I+  T                 +S  E+I   + D +     A     ++A++   +
Sbjct: 357 LRTIERVT-----------------KSSMEEIQLPLRDQVAEARLAKLGAELEAEKEHKA 399

Query: 757 KKKGKAHLKSLR 768
             K    ++ L+
Sbjct: 400 LDKFAELVEKLQ 411


>gi|17065030|gb|AAL32669.1| RNA helicase, DRH1 [Arabidopsis thaliana]
          Length = 619

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 14/183 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           +  T++ +AT      +    ++V       G VD  V  +S    +E V         +
Sbjct: 335 KRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLE 394

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  + + G ++++   TKRM + LT  L  R      +H +    ER  ++   R G+ 
Sbjct: 395 QILRSQEPGSKVIIFCSTKRMCDQLTRNLT-RQFGAAAIHGDKSQPERDNVLNQFRSGRT 453

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VLV  ++   GLD+ +   V   D     F       +  IGR  R   +         
Sbjct: 454 PVLVATDVAARGLDVKDIRAVVNYD-----FPNGVEDYVHRIGRTGRAGATGQAFTFFGD 508

Query: 694 TKS 696
             S
Sbjct: 509 QDS 511


>gi|51712358|ref|XP_485792.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus]
 gi|82902181|ref|XP_918907.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus]
          Length = 411

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 211 ATQVVLISATLPHEILEMTNKFMTDPICILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 270

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH  +   ER  I+++ R 
Sbjct: 271 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGNMPQKERESIMKEFRS 325

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 326 GASRVLISTDIWARGLDVPQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 380

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 381 VKNDDIRILRDIEQ 394


>gi|322494127|emb|CBZ29424.1| putative ATP-dependent RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 622

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 71/194 (36%), Gaps = 17/194 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVEDVYDEINLA 578
            T++ SAT      +  +  +        G V    E     +R     V+     + + 
Sbjct: 332 QTLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQDVRWVED-VDKRGCLLEVL 390

Query: 579 AQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            + QG R+L+ V  KR A+ L  YL +  I    +H +    ER E +   + G   VLV
Sbjct: 391 KEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCRVLV 450

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI--LYADT--- 692
             ++   GLDIP   +V   D        +    +  IGR  R          + D    
Sbjct: 451 ATDVASRGLDIPNVAVVVQYD-----LPSNIDDYVHRIGRTGRAGKRGTALSFFNDKNRN 505

Query: 693 ITKSIQLAIDETTR 706
           I   +   + ET +
Sbjct: 506 IVDDLIPLLRETNQ 519


>gi|261331698|emb|CBH14692.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 738

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 91/245 (37%), Gaps = 19/245 (7%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR-LPSCMDNRPLRFEEWNCLRPTTIVV 528
            L +DE+   +        G   +   L    +  +PS  + + L F       P  I+ 
Sbjct: 440 FLILDEADRMLE------MGFEEQIEYLVASRYSDMPSSEERQTLMFS---ATFPQRILN 490

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
            A    +   +   + V ++   T  +   +E      + + ++D I    Q  L +L+ 
Sbjct: 491 LA--KRYLRPKYYLLTVGRVGSTTKNITQKLERVPEAEKKDKLFDIIYKQKQTDL-VLIF 547

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TKR AE L   L    I    +H + +  +R   ++D + G   +LV  ++   GLDI
Sbjct: 548 VETKRSAEQLHSALKSSGIPSTTIHGDRRQSDREIALKDFKSGITPILVATDVASRGLDI 607

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           P    V   D  KE            IGR  R  N  V         +  LA++     R
Sbjct: 608 PNVAHVIQYDLPKE-----MDDYTHRIGRTGRAGNKGVATSFYD-RNNRNLAVELYHYLR 661

Query: 709 EKQLE 713
           E + E
Sbjct: 662 EHEQE 666


>gi|212693337|ref|ZP_03301465.1| hypothetical protein BACDOR_02849 [Bacteroides dorei DSM 17855]
 gi|212664102|gb|EEB24674.1| hypothetical protein BACDOR_02849 [Bacteroides dorei DSM 17855]
          Length = 423

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 81/193 (41%), Gaps = 28/193 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       E+II+   +     ++   ++  +D
Sbjct: 182 QTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKIIQTAYICYERQKLGIIQSLFQD 241

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                    Q   R+++   +K   +++T+      + V  MHS+++  +R +I+R+ + 
Sbjct: 242 ---------QTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKS 292

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILY 689
           G+ ++L+  +++  G+DI +  LV   D             +  IGR AR N +   I +
Sbjct: 293 GRINILIATDIVSRGIDIDDIRLVINYDV-----PHDSEDYVHRIGRTARANHDGCAITF 347

Query: 690 ADTITKSIQLAID 702
                ++   AI+
Sbjct: 348 VSEKEQTQFKAIE 360


>gi|168056517|ref|XP_001780266.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668320|gb|EDQ54930.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 397

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 71/183 (38%), Gaps = 21/183 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             ++VSAT     LE     + + +        +   G+    V +     + +   D+Y
Sbjct: 199 QVVLVSATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 258

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R G 
Sbjct: 259 DTLTIT-----QAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQKERDAIMAEFRSGT 313

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V +    
Sbjct: 314 TRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVR 368

Query: 693 ITK 695
              
Sbjct: 369 SDD 371


>gi|118582049|sp|Q0UWA6|DED1_PHANO RecName: Full=ATP-dependent RNA helicase DED1
          Length = 696

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L  +      +H +    ER + +   R G+  +LV   +   G
Sbjct: 464 LIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRSGRCPILVATAVAARG 523

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           LDIP    V   D             +  IGR  R  N+ +  
Sbjct: 524 LDIPNVTHVVNYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 561


>gi|315302253|ref|ZP_07873161.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL
           F6-596]
 gi|313629376|gb|EFR97601.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL
           F6-596]
          Length = 526

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 98/256 (38%), Gaps = 16/256 (6%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P     E+         I+   +    +E    +   ++ +D ++    
Sbjct: 179 QTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLD 238

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV 
Sbjct: 239 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 298

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R       I +        
Sbjct: 299 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGY 353

Query: 698 QLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
              ++ETT++R + L+    ++      +   EKI E I    L D  T    +  +  +
Sbjct: 354 LRIVEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDA 413

Query: 755 LSKKKGKAHLKSLRKQ 770
                  A LK L K+
Sbjct: 414 TDIA--AAMLKMLAKE 427


>gi|157108214|ref|XP_001650127.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|65306807|gb|AAY41941.1| vasa-like protein [Aedes aegypti]
 gi|108879362|gb|EAT43587.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 638

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 91/257 (35%), Gaps = 35/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++        VD+  VT  ++  +   +  R     + GF +PS          
Sbjct: 345 TPGRLLDF--------VDKQAVTFERVKFVVLDEADRM---LDMGF-MPSVEKMMNH--- 389

Query: 517 EWNCLRP----TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV-------DPPVEIRSAR 565
               +RP     T++ SAT  +   E     +   I    G+V       +  +   S  
Sbjct: 390 --ETMRPKEERQTLMFSATFPAEIQELAGQFLNNYIFVAVGIVGGASTDVEQTIHQVSKF 447

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            + + + + +      G   L+ V TKR A+ L   L E       +H +    ER E +
Sbjct: 448 QKRKKLEELLEADDPTG--TLVFVETKRNADYLASLLSETKFPTTSIHGDRLQREREEAL 505

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RD + GK  +L+  ++   GLDI     V   D  K     S    +  IGR  R  N  
Sbjct: 506 RDFKSGKMFILIATSVAARGLDIKNVAHVVNYDLPK-----SIDDYVHRIGRTGRVGNKG 560

Query: 686 VILYADTITKSIQLAID 702
                  +     +A D
Sbjct: 561 KATSFYDMEADAAIAPD 577


>gi|310831360|ref|YP_003970003.1| putative superfamily II helicase/eIF-4AIII [Cafeteria roenbergensis
           virus BV-PW1]
 gi|309386544|gb|ADO67404.1| putative superfamily II helicase/eIF-4AIII [Cafeteria roenbergensis
           virus BV-PW1]
          Length = 384

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 63/179 (35%), Gaps = 13/179 (7%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-----DVYDEIN 576
               +SAT      E+ +      E ++     +            VE     D   ++ 
Sbjct: 182 QKCFLSATVNRNLREISKSVLDNPELVLLKKEDIQVKAIKNFYLDTVEEEYKFDTLLDLY 241

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                    ++   +    E +   L E       +H  ++  ER +I+ + R GK  +L
Sbjct: 242 QIISTSH-TMIFCNSINKIEFVKNKLEEEGFPTTTIHGGLEQEERSKIVDEFREGKTRIL 300

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  +LL  G+DIPE  LV   D  K     +  + I  IGR+ R     V +    +  
Sbjct: 301 LTTDLLARGIDIPEVKLVINYDLPK-----NHETFIHRIGRSGRFGKKGVSITFIKMED 354


>gi|227513680|ref|ZP_03943729.1| ATP-dependent DNA helicase/translocase [Lactobacillus buchneri ATCC
           11577]
 gi|227083091|gb|EEI18403.1| ATP-dependent DNA helicase/translocase [Lactobacillus buchneri ATCC
           11577]
          Length = 442

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 99/225 (44%), Gaps = 28/225 (12%)

Query: 510 NRPLRFEEWNCLRPT--TIVVSATPGS---WELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           N  L +   N ++P    + ++ATP      ++++ +  +    IR  G + P V+I   
Sbjct: 223 NDMLHYAVQNAIKPGGGILYLTATPDDALMHKIKRKKISVSYLPIRYHGHLLPTVKI--V 280

Query: 565 RTQ-----VED------VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           + Q     V+       +   IN   +Q  R LL V   +    ++  L + NI   Y+ 
Sbjct: 281 KNQHLKRLVDQGRLPKSILQMINRLVKQKQRFLLFVPRIKDLTLVSNALEKANINCTYLT 340

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
                 +R+E +  +R    D L+   +L  G+  P    V +L AD E F  S ++L+Q
Sbjct: 341 VYSADPQRLEKVTAMRSQSVDFLITTTILERGVTFPGID-VMVLKADDEVF--STSALVQ 397

Query: 674 TIGRAARNVNSK---VILYADTITKSIQ---LAIDETTRR-REKQ 711
             GR  RN       VILY +T +K+I+     I E  R+ RE +
Sbjct: 398 IAGRVGRNSARPTGQVILYCETKSKTIKSCDRQIKEMNRKAREIK 442


>gi|296394094|ref|YP_003658978.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296181241|gb|ADG98147.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
           44985]
          Length = 548

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 73/191 (38%), Gaps = 11/191 (5%)

Query: 523 PTTIVVSAT-PGS--WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL-- 577
               + SAT PG+     +      VE  ++        +E R          D +    
Sbjct: 184 KQVALFSATMPGAIRKISKTYLRDPVEVTVKAATTTSENIEQRYTLVAHHRKLDLLTRIL 243

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +Q   +++ V TK+  ED+ E L  R    R ++ ++    R   +  LR GK D+LV
Sbjct: 244 EVEQFSAMIVFVRTKQATEDIAERLRARGFAARPLNGDIAQAARERTVSALRAGKIDILV 303

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKS 696
             ++   GLD+     V   D           S +  IGR  R   + V   +     +S
Sbjct: 304 ATDVAARGLDVERITHVFNYDV-----PHDTESYVHRIGRTGRAGRAGVSYLFVTPRERS 358

Query: 697 IQLAIDETTRR 707
           +  AI+  TR+
Sbjct: 359 MIGAIERATRQ 369


>gi|289523176|ref|ZP_06440030.1| transcription-repair coupling factor [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503719|gb|EFD24883.1| transcription-repair coupling factor [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 1049

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 90/236 (38%), Gaps = 31/236 (13%)

Query: 178 GSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAY 237
           G+ +      V+   +  +I + P+   A   Y ++K  F    + Y         PE  
Sbjct: 31  GAARP----WVLRDCKFKSIAIFPDNSQALDFYFDWKALFGEREIVYL--------PELP 78

Query: 238 VPRTDTYIEKESSINEQIDRM-RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           +               ++ R  RH     LL       +S+   +    +  S++     
Sbjct: 79  LTADQVGQSALWVSRGELYRKWRHGEGNKLL-------ISTPGALM---TPLSFADDSFN 128

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVAWRVSMFGN 355
           + +G+++ +  L   L    Y+  D+    G F + G+ +++F P +      RV  F +
Sbjct: 129 IAVGEAIGRDNLSRWLQNSGYEHVDLVWAPGHFALRGNLLDLFDPLYR--YPIRVEFFDD 186

Query: 356 DIEEISEFYPLTGQKIRNVETIKIY--ANSHYVTPRPTLNTAMKYI---KEELKMR 406
           ++E I  F   T + I + + I+I+    S    P  T+    + I    +EL+ +
Sbjct: 187 EVESIRAFDGETQKSIAHHDEIEIHRIYGSKLSFPFETIPEGCRVILFDPKELESQ 242



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 87/253 (34%), Gaps = 23/253 (9%)

Query: 525 TIVVSATPGSWEL--EQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVEDVYDEINLAAQQ 581
            + +SATP    L         +  +  P     P + +       +  V + I     +
Sbjct: 662 VLSISATPIPRTLYMALSGIRDISLLCTPPKERQPVITVVGPWGDSL--VREAIVREISR 719

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++       +  E   + L +     +   +H ++        +     G  +VLV  
Sbjct: 720 GGQVFFVYDRIKGIEKRAQSLKKLVPEAKVGIIHGQLPKNVLERTMIKFLRGDINVLVCT 779

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT--KSI 697
            ++  GLDI     + + +A   G L     L   +GR +R   + ++  +D +   +++
Sbjct: 780 TIVESGLDIARANTLIVDNAHMFG-LSQLHQLRGRVGRRSRQAFAYMLYPSDKVLTKEAM 838

Query: 698 QL--AIDETT----------RRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN 745
           Q   AI E            R  E +   N    I      EKI   +   L+EDA    
Sbjct: 839 QRLEAISECNQLGGGYMLALRDLEIRGGGNL-LGIEQHGHVEKIGFQLYYKLIEDAMKNL 897

Query: 746 ISIDAQQLSLSKK 758
                + LS+  K
Sbjct: 898 KGEGTEALSMDIK 910



 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 65/167 (38%), Gaps = 22/167 (13%)

Query: 81  QSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITF 140
           + ++  ++++ ++++   ++    AL  L +   P  K+G +                  
Sbjct: 462 KKNLQRAKEKAQKVAADLVSLY--ALREL-KKGFPFPKDGDM---------------SRH 503

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKT-FTMAKVIEAMQ--RPA 196
           F+    Y  + DQ  AI ++ + +       ++L+G  G GKT   +   I+A++  +  
Sbjct: 504 FEKTFPYKETSDQLKAIEEIKRDMEKPVPMDRVLVGDVGFGKTEVALRAAIKAVEGGKQV 563

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDT 243
            V+ P  +LA Q Y  F        +          Q +  +   DT
Sbjct: 564 AVLVPTTLLAEQHYENFIARIGDMPIRVEQLSRFEGQAKQRLILEDT 610


>gi|156977695|ref|YP_001448601.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116]
 gi|156529289|gb|ABU74374.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116]
          Length = 527

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 99/279 (35%), Gaps = 39/279 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   ++++           Q+  +   +  R     + GF      D R  +  
Sbjct: 130 TPGRLMDLYNQNAV--------KFDQLEMLVLDEADRM---LDMGFI----RDIR--KIL 172

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDV 571
           E    +   ++ SAT  +   +  +G++   VE  + P       VE  I  A   V+  
Sbjct: 173 ELLPKQRQNLLFSATFSNEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYPAD--VKKK 230

Query: 572 YDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
              +    + G   ++L+   TK  A  L ++L ++ I    +H       R + + D +
Sbjct: 231 APMLVKLIKDGDWKQVLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFK 290

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVIL 688
            G+  VLV  ++   G+DIP+   V   +  K          +  IGR  R     K I 
Sbjct: 291 SGEVRVLVATDIAARGIDIPQLPQVVNFELPKV-----AEDYVHRIGRTGRAGEVGKAIS 345

Query: 689 YADTITKSIQLAIDETTRRREKQLE--HNKKHNINPQSV 725
               +  S   AI+     R  Q      +     P +V
Sbjct: 346 LVCALEASELFAIE-----RLIQQLLPRKELEGYAPTNV 379


>gi|156053564|ref|XP_001592708.1| ATP-dependent RNA helicase DED1 [Sclerotinia sclerotiorum 1980]
 gi|160380639|sp|A7EJY3|DED1_SCLS1 RecName: Full=ATP-dependent RNA helicase ded1
 gi|154703410|gb|EDO03149.1| ATP-dependent RNA helicase DED1 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 678

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ L+++L  +N     +H +    ER   +   R G+  +LV   +   
Sbjct: 448 TLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAAR 507

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           GLDIP    V   D             +  IGR  R  N+ +
Sbjct: 508 GLDIPNVTHVVNYD-----LPTDIDDYVHRIGRTGRAGNTGI 544


>gi|86144457|ref|ZP_01062789.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
 gi|85837356|gb|EAQ55468.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
          Length = 523

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 94/261 (36%), Gaps = 28/261 (10%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   ++++           Q+  +   +  R     + GF      D R  +  
Sbjct: 130 TPGRLLDLYNQNAV--------RFDQLEILVLDEADRM---LDMGFI----RDIR--KIL 172

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDV 571
            +   +   ++ SAT         +G++   VE  + P     P VE  I     + +  
Sbjct: 173 AFLPKKRQNLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKK-KKA 231

Query: 572 YDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                L      R +L+   TK  A  L  +L E++I    +H       R + + + + 
Sbjct: 232 PMLAKLIKDNDWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKT 291

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           GK  VLV  ++   G+DIP+   V   D             I   GRA     +  ++ A
Sbjct: 292 GKVRVLVATDIAARGIDIPQLPQVVNFDLP--NVSEDYVHRIGRTGRAGEVGKAISLVCA 349

Query: 691 DTITK--SIQLAIDETTRRRE 709
           D + +   I+  I +   RRE
Sbjct: 350 DEVGELFGIERLIQQVLERRE 370


>gi|18395852|ref|NP_566141.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|16226725|gb|AAL16243.1|AF428313_1 AT3g01540/F4P13_9 [Arabidopsis thaliana]
 gi|15215694|gb|AAK91393.1| AT3g01540/F4P13_9 [Arabidopsis thaliana]
 gi|32306509|gb|AAP78938.1| At3g01540 [Arabidopsis thaliana]
 gi|332640163|gb|AEE73684.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
          Length = 618

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 14/183 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           +  T++ +AT      +    ++V       G VD  V  +S    +E V         +
Sbjct: 335 KRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLE 394

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  + + G ++++   TKRM + LT  L  R      +H +    ER  ++   R G+ 
Sbjct: 395 QILRSQEPGSKVIIFCSTKRMCDQLTRNLT-RQFGAAAIHGDKSQPERDNVLNQFRSGRT 453

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VLV  ++   GLD+ +   V   D     F       +  IGR  R   +         
Sbjct: 454 PVLVATDVAARGLDVKDIRAVVNYD-----FPNGVEDYVHRIGRTGRAGATGQAFTFFGD 508

Query: 694 TKS 696
             S
Sbjct: 509 QDS 511


>gi|32474124|ref|NP_867118.1| transcription-repair coupling factor [Rhodopirellula baltica SH 1]
 gi|32444661|emb|CAD74663.1| transcription-repair coupling factor [Rhodopirellula baltica SH 1]
          Length = 1181

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 78/212 (36%), Gaps = 23/212 (10%)

Query: 174 LGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQ 233
            GV G  +    A +        +V+ P  + A  +  +  +F   + V   +S  D   
Sbjct: 118 SGVWGGIRGLLAAAL-TRHHPHVLVLLPQAVDADIVAGDVSSFGIEDVVALPLSAGDGTG 176

Query: 234 PEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERND----CIVVSSV--SCIYGIGSV 287
                          SSI +     R    + L  R+      +VV+S   + I  + SV
Sbjct: 177 ---------------SSIRDADYAARLQVLQRLRARDQHSPKPLVVTSYIGAAIQRVPSV 221

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
            S  +   +L +GD V+ + +   L +  +       + G F   G  ++++    +   
Sbjct: 222 TSLEKATRELAVGDIVDPEVIRRWLAEAGFAAVTAVQVPGEFASRGGLLDVYSPD-QPQP 280

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            R+  F ++IE I  F   T +    +  +++
Sbjct: 281 IRIEWFDDEIESIRRFDAATQRSSETLSKVEL 312



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 75/206 (36%), Gaps = 31/206 (15%)

Query: 519 NCLRPT-----TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV----- 568
             L+        + +SATP    L      + +     + L  PP E  +  T+V     
Sbjct: 784 ERLKTQHSNVDVLTLSATPIPRTLHMALVGVRD----ISNLETPPAERMAVETKVTRWDD 839

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY----ERNIRVRYMHSEVKTLERIEI 624
           + +   I     +G ++          +DL   +     E  I +   H +++     ++
Sbjct: 840 KMLRSAIVRELNRGGQMYFVHNRIGDMDDLAARIKAIVPELRIGIG--HGQMEEGALEQV 897

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + D    KFD+L+   ++  GLDIP    + I D ++ G     + L Q  GR  R  + 
Sbjct: 898 MVDFIDHKFDMLLATTIIESGLDIPNANTMFIDDGNRYGL----SDLHQLRGRVGRYKHQ 953

Query: 685 KVILYADTITKSIQ-------LAIDE 703
                  +  K +         AI+E
Sbjct: 954 AYCYLLVSPNKRLTPEASKRLRAIEE 979



 Score = 42.0 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 62/185 (33%), Gaps = 16/185 (8%)

Query: 71  NTASKGEFQSQSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWS 130
            T ++ +      IS +    ++ +E  +T     L  L        +  ++  P    +
Sbjct: 579 GTKNRPKLAKIGGISWT--NQKKAAEAAVTDMADELLELQAK-----RATRLGIPMSPDN 631

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKV 188
                 D +F      Y  + DQ +AI  L   + + R   +L+ G  G GKT   M   
Sbjct: 632 EWQRQFDASF-----PYLETPDQLSAIEALKIDMEAPRPMDRLICGDVGFGKTEVAMRAA 686

Query: 189 IEAMQR--PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
            +A+       V+ P  +LA Q Y  F+       VE           E      +    
Sbjct: 687 FKAVSSGYQVAVLVPTTVLAEQHYQSFRERMAEFPVEIRKLSRFCTPAEQRETVKEIRRG 746

Query: 247 KESSI 251
           K   +
Sbjct: 747 KADIV 751



 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 5/113 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLER 621
            + E        A   G ++ + V T  +AE       E + E  + +R +       E+
Sbjct: 677 GKTEVAMRAAFKAVSSGYQVAVLVPTTVLAEQHYQSFRERMAEFPVEIRKLSRFCTPAEQ 736

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            E ++++R GK D+++G + +  + ++    GLV I +  + G    +    Q
Sbjct: 737 RETVKEIRRGKADIVIGTHRVASKDVEFNNLGLVVIDEEQRFGVAVKERLKTQ 789


>gi|30678365|ref|NP_850492.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|42572223|ref|NP_974206.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|79295442|ref|NP_001030619.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|108861885|sp|Q8H136|RH14_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 14
 gi|6016713|gb|AAF01539.1|AC009325_9 RNA helicase, DRH1 [Arabidopsis thaliana]
 gi|3149952|dbj|BAA28347.1| DRH1 [Arabidopsis thaliana]
 gi|332640162|gb|AEE73683.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
 gi|332640164|gb|AEE73685.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
 gi|332640165|gb|AEE73686.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
          Length = 619

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 14/183 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           +  T++ +AT      +    ++V       G VD  V  +S    +E V         +
Sbjct: 335 KRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLE 394

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  + + G ++++   TKRM + LT  L  R      +H +    ER  ++   R G+ 
Sbjct: 395 QILRSQEPGSKVIIFCSTKRMCDQLTRNLT-RQFGAAAIHGDKSQPERDNVLNQFRSGRT 453

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VLV  ++   GLD+ +   V   D     F       +  IGR  R   +         
Sbjct: 454 PVLVATDVAARGLDVKDIRAVVNYD-----FPNGVEDYVHRIGRTGRAGATGQAFTFFGD 508

Query: 694 TKS 696
             S
Sbjct: 509 QDS 511


>gi|84392274|ref|ZP_00991701.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01]
 gi|84376394|gb|EAP93274.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01]
          Length = 428

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 79/214 (36%), Gaps = 36/214 (16%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           +  T++ SAT              EQ+      L++ P+E++        +   +    +
Sbjct: 192 KKQTLLFSAT------------FPEQVKTLTHELLNDPIEVQLQSANASTLVQRV-FEVE 238

Query: 581 QGLRI---------------LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +G +                L+ V  K   E L + LY+R I     H +     R  I+
Sbjct: 239 KGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRIL 298

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D + G+ DVL+  ++   GLDI +  +V   D       RS +  +  IGR+ R     
Sbjct: 299 EDFKSGEIDVLIATDIAARGLDIEKLPVVINFD-----LPRSPSDYMHRIGRSGRAGEVG 353

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
           + L            I E  ++ + +LE  +   
Sbjct: 354 LALSLIDHEDYHHFTIIE--KKNKIRLEREQIEG 385


>gi|321399813|emb|CAJ08508.2| putative ATP-dependent RNA helicase [Leishmania major strain
           Friedlin]
          Length = 615

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 17/194 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVEDVYDEINLA 578
            T++ SAT      +  +  +        G V    E     +R     ++     + + 
Sbjct: 326 QTLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQDVRWVED-MDKRGCLLEVL 384

Query: 579 AQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            + QG R+L+ V  KR A+ L  YL +  I    +H +    ER E +   + G   VLV
Sbjct: 385 KEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCRVLV 444

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADT--- 692
             ++   GLDIP   +V   D        +    +  IGR  R       +  + D    
Sbjct: 445 ATDVASRGLDIPNVAVVVQYD-----LPSNIDDYVHRIGRTGRAGKRGTAISFFNDKNRN 499

Query: 693 ITKSIQLAIDETTR 706
           I   +   + ET +
Sbjct: 500 IVDDLIPLLRETNQ 513


>gi|218676102|ref|YP_002394921.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218324370|emb|CAV25741.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 523

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 94/261 (36%), Gaps = 28/261 (10%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   ++++           Q+  +   +  R     + GF      D R  +  
Sbjct: 130 TPGRLLDLYNQNAV--------RFDQLEILVLDEADRM---LDMGFI----RDIR--KIL 172

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDV 571
            +   +   ++ SAT         +G++   VE  + P     P VE  I     + +  
Sbjct: 173 AFLPKKRQNLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKK-KKA 231

Query: 572 YDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                L      R +L+   TK  A  L  +L E++I    +H       R + + + + 
Sbjct: 232 PMLAKLIKDNDWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKT 291

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           GK  VLV  ++   G+DIP+   V   D             I   GRA     +  ++ A
Sbjct: 292 GKVRVLVATDIAARGIDIPQLPQVVNFDLP--NVSEDYVHRIGRTGRAGEVGKAISLVCA 349

Query: 691 DTITK--SIQLAIDETTRRRE 709
           D + +   I+  I +   RRE
Sbjct: 350 DEVGELFGIERLIQQVLERRE 370


>gi|108761880|ref|YP_632259.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK
           1622]
 gi|108465760|gb|ABF90945.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK
           1622]
          Length = 501

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 67/192 (34%), Gaps = 11/192 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +  T+  SAT     ++  + I+ + I   + P       V  +    + E     +   
Sbjct: 179 KRQTLFFSATLPPDIVDLARSILTDPIRVEVTPASSTAETVSQQVYFVEREQKRGLLTHL 238

Query: 579 AQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            ++G   R L+   TK  A  + + L    +    +H       R   + + R G   VL
Sbjct: 239 LKEGNIHRALVFTRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFRSGTLRVL 298

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   G+DI     V   D             +  IGR  R   S   + + D   +
Sbjct: 299 VATDIAARGIDIDGLSYVVNYD-----LPNVPEQYVHRIGRTGRAGASGTAVSFCDAEER 353

Query: 696 SIQLAIDETTRR 707
           +    I+ T RR
Sbjct: 354 AYLRDIERTIRR 365


>gi|310800687|gb|EFQ35580.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 401

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 200 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCD 259

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R 
Sbjct: 260 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQ 314

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 315 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 369

Query: 691 DTITK 695
            T   
Sbjct: 370 VTSED 374


>gi|212537643|ref|XP_002148977.1| ATP dependent RNA helicase (Dbp1), putative [Penicillium marneffei
           ATCC 18224]
 gi|210068719|gb|EEA22810.1| ATP dependent RNA helicase (Dbp1), putative [Penicillium marneffei
           ATCC 18224]
          Length = 692

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 13/172 (7%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   +      L+    + V ++   +  +   +E      +   + D ++
Sbjct: 394 QTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQRIEYVEDHDKRSVLLDILH 453

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                GL  L+ V TKRMA+ L ++L  +N     +H +    ER   +   R  +  +L
Sbjct: 454 THGSTGL-TLIFVETKRMADSLCDFLINQNFPATAIHGDRTQRERERALEMFRNARCPIL 512

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V   +   GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 513 VATAVAARGLDIPNVTHVVNYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 559


>gi|169602158|ref|XP_001794501.1| hypothetical protein SNOG_03958 [Phaeosphaeria nodorum SN15]
 gi|160706094|gb|EAT89163.2| hypothetical protein SNOG_03958 [Phaeosphaeria nodorum SN15]
          Length = 623

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L  +      +H +    ER + +   R G+  +LV   +   G
Sbjct: 391 LIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRSGRCPILVATAVAARG 450

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           LDIP    V   D             +  IGR  R  N+ +  
Sbjct: 451 LDIPNVTHVVNYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 488


>gi|218193167|gb|EEC75594.1| hypothetical protein OsI_12293 [Oryza sativa Indica Group]
          Length = 404

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 75/192 (39%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
              ++SAT     LE     + + +        +   G+    V +     + +   D+Y
Sbjct: 206 QVCLISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLY 265

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R G 
Sbjct: 266 DTLTIT-----QAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGA 320

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I +  
Sbjct: 321 TRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVK 375

Query: 692 TITKSIQLAIDE 703
                I   I++
Sbjct: 376 KEDIRILRDIEQ 387


>gi|194290299|ref|YP_002006206.1| dead box ATP-dependent RNA helicase with p-loop hydrolase domain
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224134|emb|CAQ70143.1| DEAD box ATP-dependent RNA helicase with P-loop hydrolase domain
           [Cupriavidus taiwanensis LMG 19424]
          Length = 511

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 92/262 (35%), Gaps = 33/262 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         V +  V + Q+  +   +  R     + GF LP       L   
Sbjct: 163 TPGRLLD--------HVQQKSVNLSQVQMLVLDEADRM---LDMGF-LPDLQRIINLLPA 210

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVED----- 570
           +       T++ SAT            + + +       +   E +R A  QVED     
Sbjct: 211 Q-----RQTLLFSATFSPEIKRLASSYLKQPVTIEVARSNSTNENVRQAVYQVEDGHKQA 265

Query: 571 -VYDEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            V   +   A+Q    + ++ V +K     L  +L    I    +H +    ER++ +  
Sbjct: 266 AVVHLLKQRAEQSQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDG 325

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-- 685
            + G  D LV  ++   GLDIP+   V   D        S    +  IGR  R   S   
Sbjct: 326 FKSGTIDALVATDVAARGLDIPDMPCVINFD-----LPYSAEDYVHRIGRTGRAGASGDA 380

Query: 686 VILYADTITKSIQLAIDETTRR 707
           + +Y     + +   I++  +R
Sbjct: 381 LSIYVPGNDERLLSDIEKLIKR 402


>gi|194857377|ref|XP_001968940.1| GG25145 [Drosophila erecta]
 gi|190660807|gb|EDV57999.1| GG25145 [Drosophila erecta]
          Length = 512

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 83/252 (32%), Gaps = 37/252 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGM-YRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
            P  L +++    + F D   V + +   M   G          +          RP   
Sbjct: 223 TPGRLLDFVDRAFITFEDTRFVVLDEADRMLDMGFSESMRKFMTH-------PTMRPE-- 273

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSART 566
                    T++ SAT    E+++  G  +   +  T          +     E+     
Sbjct: 274 -------HQTLMFSAT-FPEEIQRLAGEFLNNYVFVTIGVVGGACSDVQQTIYEVNKFAK 325

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + +     + +  +Q    ++ V TKR A+ L  +L E       +H +    +R + +R
Sbjct: 326 RSK----LMEILREQADGTIVFVETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALR 381

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK- 685
           D + G   V++  ++   GLDI     V   D        +    +  IGR  R  N+  
Sbjct: 382 DFKNGSMKVIIATSVAARGLDIKNINHVVNFD-----MPNNIDDYVHRIGRTGRVGNNGR 436

Query: 686 VILYADTITKSI 697
              + D      
Sbjct: 437 ATSFFDPDHDQA 448


>gi|152981028|ref|YP_001352892.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281105|gb|ABR89515.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 466

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 77/247 (31%), Gaps = 15/247 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII-------RPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT         + I  + +I            +   V      +    + D + 
Sbjct: 204 QTMLFSATLDGMVGNMAKRITKDALIIQIAGSATKHENIKQCVHFVDDLSHKNRMLDHLL 263

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +   + ++   TKR A+ + + L         +H ++    R   +  LR G+  VL
Sbjct: 264 -RDETMDQAVVFTATKRDADTIADRLNIAGFAAAALHGDMHQGARNRTLDGLRRGQIRVL 322

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+D+P    V   D  K          +  IGR  R   + + +      +S
Sbjct: 323 VATDVAARGIDVPGITHVVNYDLPKF-----PEDYVHRIGRTGRAGRNGIAVSLVNHAES 377

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
           +   +    R  ++ +         P+           P   +       +    Q + S
Sbjct: 378 MN--VKRIERFIKQLIPVEVIEGFEPKRSASAPRSNHKPGGWKPGDNRGNTAKPGQRTFS 435

Query: 757 KKKGKAH 763
           K      
Sbjct: 436 KPNAPRK 442


>gi|67902058|ref|XP_681285.1| hypothetical protein AN8016.2 [Aspergillus nidulans FGSC A4]
 gi|74656894|sp|Q5AUL4|FAL1_EMENI RecName: Full=ATP-dependent RNA helicase fal1
 gi|40740448|gb|EAA59638.1| hypothetical protein AN8016.2 [Aspergillus nidulans FGSC A4]
 gi|259480767|tpe|CBF73711.1| TPA: ATP-dependent RNA helicase fal1 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5AUL4] [Aspergillus
           nidulans FGSC A4]
          Length = 399

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 79/193 (40%), Gaps = 22/193 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   G+    + +     + +   D
Sbjct: 198 ATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCD 257

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 258 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 312

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V I +
Sbjct: 313 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGRFGRKGVAINF 367

Query: 690 ADTITKSIQLAID 702
             +    I   I+
Sbjct: 368 VTSDDVRILRDIE 380


>gi|326923424|ref|XP_003207936.1| PREDICTED: hypothetical protein LOC100542017, partial [Meleagris
            gallopavo]
          Length = 1461

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 92/255 (36%), Gaps = 30/255 (11%)

Query: 523  PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
            P T++ SAT  +W  +      + +   V+ I R T      VE  +           + 
Sbjct: 1053 PQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRRTQKAATTVEHLAIECHWSQRAAVIG 1112

Query: 573  DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            D I + +    R ++   TK+ A +L           + +H ++   +R   ++  R G 
Sbjct: 1113 DVIQVYSGSHGRTIVFCETKKDANELA-LNASIKQDCQSLHGDIPQKQREITLKGFRNGA 1171

Query: 633  FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + + +    
Sbjct: 1172 FKVLVATNVAARGLDIPEVDLVVQSSPPKDV-----ESYIHRSGRTGRAGRTGICICFY- 1225

Query: 693  ITKSIQLAIDETTRRREKQLEH-NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                         R+ E QL +  +K  I  + V       I     +DA     S+   
Sbjct: 1226 ------------QRKEENQLRYVEQKAGITFKRVGVPTATDIIKASSKDAIRCLDSVPQS 1273

Query: 752  QLSLSKKKGKAHLKS 766
             +   K+  +  ++ 
Sbjct: 1274 AIDYFKESAQLLIEE 1288


>gi|321459317|gb|EFX70372.1| hypothetical protein DAPPUDRAFT_328137 [Daphnia pulex]
          Length = 738

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 70/192 (36%), Gaps = 26/192 (13%)

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           W  E  +   +  ++  +GL           +QVE        + +     L+ V TKR 
Sbjct: 460 WVEEHDKRSFLLDLLNASGLNKF-------NSQVE------TESTEHEQLTLVFVETKRG 506

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A+ L E+LY     V  +H +    ER + ++  R GK  +LV   +   GLDIP    V
Sbjct: 507 ADALEEFLYRDGYPVTSIHGDRSQREREDALKRFRSGKTPILVATAVAARGLDIPHVKHV 566

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD-----TITKSIQLAIDETTRRR- 708
              D             +  IGR  R  N  V           + + +   I ET +   
Sbjct: 567 INFD-----LPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNLIRDLVELIIETKQELP 621

Query: 709 --EKQLEHNKKH 718
              + +  + KH
Sbjct: 622 SWLEGMAMDIKH 633


>gi|260774297|ref|ZP_05883212.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
 gi|260611258|gb|EEX36462.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
          Length = 633

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLIARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRINHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTR 706
              I+  TR
Sbjct: 357 LRTIERVTR 365


>gi|50310213|ref|XP_455126.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660335|sp|Q6CLR3|DED1_KLULA RecName: Full=ATP-dependent RNA helicase DED1
 gi|49644262|emb|CAG97833.1| KLLA0F01034p [Kluyveromyces lactis]
          Length = 627

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 20/177 (11%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQII---------RPTGLVDPPVEIRSARTQVEDVYD 573
            T++ SAT P   E++      ++  +             +    + +        D   
Sbjct: 353 QTLMFSATFPS--EIQHLASDFLKDYVFLSVGRVGSTSENITQKILYVEDFDK--NDTLL 408

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A+ +GL  L+ V TKR A+ LT++L     +   +H +    ER   +   + G+ 
Sbjct: 409 DLLAASNEGL-TLIFVETKRAADSLTDFLIMEGFKATAIHGDRTQGERERALSAFKTGRA 467

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            +LV   +   GLDIP    V   D             +  IGR  R  N+ V    
Sbjct: 468 TILVATAVAARGLDIPNVTHVINFD-----LPNDIDDYVHRIGRTGRAGNTGVATTF 519


>gi|260774135|ref|ZP_05883050.1| ATP-dependent RNA helicase RhlE [Vibrio metschnikovii CIP 69.14]
 gi|260611096|gb|EEX36300.1| ATP-dependent RNA helicase RhlE [Vibrio metschnikovii CIP 69.14]
          Length = 383

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 75/198 (37%), Gaps = 20/198 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           R   ++ SAT  +   E  +G++   VE  + P       VE  I  A   V+     + 
Sbjct: 105 RRQNLLFSATFSAEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD--VKKKPAMLV 162

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++G   ++L+ + TK  A  L  YL E+ +    +H       R   + D + G   
Sbjct: 163 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGDIR 222

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +LV  ++   G+DIP+   V   +  K          +  IGR  R     K I +   +
Sbjct: 223 ILVATDIAARGIDIPQLPQVVNFELPKV-----AEDYVHRIGRTGRAGEVGKAISFVCEL 277

Query: 694 TKSIQLAIDETTRRREKQ 711
                 AI+     R  Q
Sbjct: 278 EAPELFAIE-----RLIQ 290


>gi|254584210|ref|XP_002497673.1| ZYRO0F10934p [Zygosaccharomyces rouxii]
 gi|238940566|emb|CAR28740.1| ZYRO0F10934p [Zygosaccharomyces rouxii]
          Length = 603

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 5/107 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A  G   L+ V TKRMA+ LT++L  +N R   +H +    ER   +   + GK D+LV 
Sbjct: 387 ASSGGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALGSFKTGKADLLVA 446

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             +   GLDIP    V   D             +  IGR  R  N+ 
Sbjct: 447 TAVAARGLDIPNVTHVINYD-----LPGDVDDYVHRIGRTGRAGNTG 488


>gi|303288181|ref|XP_003063379.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455211|gb|EEH52515.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 513

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 72/190 (37%), Gaps = 20/190 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVE-IRSARTQVEDVYDE 574
            T++ SAT    E+++     ++  I            L+   +E +RS   +   + D 
Sbjct: 242 QTMLFSAT-FPREIQRMASDFLKDYIFLTVGRVGSSHTLITQQIEYLRSYEDKKSMLMDL 300

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++    +GL  L+ V TKR A+ L ++L         +H +    ER   ++  R G+  
Sbjct: 301 VHAV--KGL-TLVFVETKRGADQLEDWLSREGFPSTSIHGDRTQQEREYALKSFRSGRTP 357

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADT 692
           +LV  ++   GLDIP    V   D             +  IGR  R          + D 
Sbjct: 358 ILVATDVAARGLDIPHVTHVINFD-----LPSDIDDYVHRIGRTGRAGKKGLATAFFTDK 412

Query: 693 ITKSIQLAID 702
                +  I+
Sbjct: 413 DAGLARSMIE 422


>gi|198463474|ref|XP_002135506.1| GA28589 [Drosophila pseudoobscura pseudoobscura]
 gi|198151271|gb|EDY74133.1| GA28589 [Drosophila pseudoobscura pseudoobscura]
          Length = 799

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 98/278 (35%), Gaps = 42/278 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++   +         T+ + + +   +  R     + GF         P   +
Sbjct: 272 TPGRLIDFLERGTT--------TLKRCTYLVLDEADRM---LDMGFE--------PQIRK 312

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSART 566
               +RP    ++ SAT      +  +  +   I    G +           V++     
Sbjct: 313 IMQQIRPDRQVLMWSATWPKEVRQLAEEFLTNYIQVNIGSLTLSANHNILQIVDVCDESE 372

Query: 567 QVEDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           ++  +   ++  + +   + ++ V TK+  +++T  +  +  R   +H +    ER  ++
Sbjct: 373 KLGKLIKLLSDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVL 432

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R G+  +LV  ++   GLD+ +   V   D     +  +    +  IGR  R+ N+ 
Sbjct: 433 SSFRNGRHSILVATDVAARGLDVDDVKFVINYD-----YPSNSEDYVHRIGRTGRSNNTG 487

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
              Y      +   A D        Q+       INP+
Sbjct: 488 TA-YTLFTHSNANKAND------LIQVLREANQEINPK 518


>gi|294789302|ref|ZP_06754540.1| ATP-dependent RNA helicase RhlE [Simonsiella muelleri ATCC 29453]
 gi|294482727|gb|EFG30416.1| ATP-dependent RNA helicase RhlE [Simonsiella muelleri ATCC 29453]
          Length = 455

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 26/220 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   +E    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKNPEII--EIEREDKQGKIEEQLLYCDDKNHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E L + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGMAISFA 350

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
            + + I  A+ +  R  E++L       + P   + K  +
Sbjct: 351 EVNEYI--AVHKIERYIERKLPEVVIEGLEPTRKRNKNAD 388


>gi|294893610|ref|XP_002774558.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239879951|gb|EER06374.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 639

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 89/240 (37%), Gaps = 30/240 (12%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            ++E   T+ Q   +   +  R     + GF      D      + +   +  T++ SAT
Sbjct: 346 MLNEKMFTLAQCVYICLDEADRM---VDLGFE-----DEVRNTLDHF-GHQRQTLLFSAT 396

Query: 532 PGSWELEQCQGIIVEQIIRPTGL-------VDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
                 E     +V  +    G        V   VE   A +++  +   +   A     
Sbjct: 397 MPRKIQEFATSALVNPVTINVGRAGAANLDVVQEVEYVKAESKLTYLLQCLQKTAPP--- 453

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++    K   +++ EYL  + +    +H  ++  ER +  R  + G  DVL+G ++  +
Sbjct: 454 VMVFCSDKASCDEVLEYLLLKGVGACAIHGGLEQSERHKSTRLFKSGAKDVLIGTDVASK 513

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  KE       + +  IGR  R   + V          I  ++DET
Sbjct: 514 GLDFPAIQHVINYDMPKE-----IENYVHRIGRTGRCGRTGVATTF------INKSVDET 562


>gi|164655646|ref|XP_001728952.1| hypothetical protein MGL_3946 [Malassezia globosa CBS 7966]
 gi|159102840|gb|EDP41738.1| hypothetical protein MGL_3946 [Malassezia globosa CBS 7966]
          Length = 396

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               ++VSAT     LE     + + +        +   G+    V +     + +   D
Sbjct: 196 ATQVVLVSATLPHDVLEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCD 255

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N +V  MH E++  ER  I+ + R 
Sbjct: 256 LYDTLTIT-----QAVIFCNTRRKVDWLTDRMRENNFQVSSMHGEMQQKERDAIMGEFRQ 310

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+    LV   D        ++ + I  IGR+ R     V +  
Sbjct: 311 GGSRVLITTDVWARGIDVQNVSLVINYD-----LPTNRENYIHRIGRSGRFGRKGVAINF 365

Query: 691 DTITK 695
            T   
Sbjct: 366 VTTED 370


>gi|73953311|ref|XP_851746.1| PREDICTED: similar to Nucleolar RNA helicase II (Nucleolar RNA
           helicase Gu) (RH II/Gu) (DEAD-box protein 21) [Canis
           familiaris]
          Length = 784

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 100/254 (39%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSAT------PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVY- 572
           P T++ SAT        + +  +     V+ I + T      VE   I+   TQ   V  
Sbjct: 370 PQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIG 429

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++ +  R    + +H ++   +R   ++  R G 
Sbjct: 430 DVIRVYSGFHGRTIIFCETKKEAQELSQNVSIRQ-DAQSLHGDIPQKQREITLKGFRNGD 488

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + + +    
Sbjct: 489 FGVLVATNVAARGLDIPEVDLVIQSSPPKDV-----ESYIHRSGRTGRAGRTGICICFYQ 543

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QLA          Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 544 HKEEYQLA----------QVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 591

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 592 ISHFKQSAEKLIEE 605


>gi|2137271|pir||I49638 probable RNA helicase protein - mouse (fragment)
 gi|286075|dbj|BAA03584.1| Drosophila vasa homologue [Mus musculus]
          Length = 637

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 72/183 (39%), Gaps = 14/183 (7%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQ------IIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
             T++ SAT    E+++  G  ++       + +  G      +      Q +     + 
Sbjct: 389 HQTLLFSAT-FPEEIQRLAGDFLKSNYLFVAVGQVGGACRDVQQTILQVGQYQKEKSLLR 447

Query: 577 LAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                G  R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  V
Sbjct: 448 FYENIGDERTMVFVETKKKADFIATFLCQEKISSTSIHGDREQREREQALGDFRCGKCPV 507

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLDI     V   D        +    +  IGR  R  N+   I + DT +
Sbjct: 508 LVATSVAARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDTDS 562

Query: 695 KSI 697
            + 
Sbjct: 563 DNH 565


>gi|118366889|ref|XP_001016660.1| P68-like protein, putative [Tetrahymena thermophila]
 gi|89298427|gb|EAR96415.1| P68-like protein, putative [Tetrahymena thermophila SB210]
          Length = 699

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 7/142 (4%)

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +D  VEI   ++Q  D   EI     +  + ++   TK+  +DL++ L   NIR   +H 
Sbjct: 433 IDQQVEIID-KSQKYDRVKEILSTMTRSDKTIIFTQTKKDCDDLSKALQTDNIRNICIHG 491

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +    +R +++   + G+ + L+  ++   GLD+ +  LV   D     F +     +  
Sbjct: 492 DKSQRDRDKVMDLFKTGRVNTLIATDVASRGLDVKDIKLVINYD-----FPKQIEDYVHR 546

Query: 675 IGRAARNV-NSKVILYADTITK 695
           +GR  R     K I + D    
Sbjct: 547 VGRTGRAGAQGKAISFLDQYED 568


>gi|119499061|ref|XP_001266288.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Neosartorya fischeri NRRL 181]
 gi|142985577|sp|A1D071|FAL1_NEOFI RecName: Full=ATP-dependent RNA helicase fal1
 gi|119414452|gb|EAW24391.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Neosartorya fischeri NRRL 181]
          Length = 399

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 79/193 (40%), Gaps = 22/193 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   G+    + +     + +   D
Sbjct: 198 ATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCD 257

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 258 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 312

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V I +
Sbjct: 313 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGRFGRKGVAINF 367

Query: 690 ADTITKSIQLAID 702
             +    I   I+
Sbjct: 368 VTSDDVRILRDIE 380


>gi|115438787|ref|NP_001043673.1| Os01g0639100 [Oryza sativa Japonica Group]
 gi|75321708|sp|Q5VNM3|RH2_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 2
 gi|55297015|dbj|BAD68586.1| putative nicotiana eukaryotic translation initiation factor 4A
           [Oryza sativa Japonica Group]
 gi|55297606|dbj|BAD68952.1| putative nicotiana eukaryotic translation initiation factor 4A
           [Oryza sativa Japonica Group]
 gi|113533204|dbj|BAF05587.1| Os01g0639100 [Oryza sativa Japonica Group]
 gi|215707106|dbj|BAG93566.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222618929|gb|EEE55061.1| hypothetical protein OsJ_02769 [Oryza sativa Japonica Group]
          Length = 404

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 75/192 (39%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
              ++SAT     LE     + + +        +   G+    V +     + +   D+Y
Sbjct: 206 QVCLISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLY 265

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R G 
Sbjct: 266 DTLTIT-----QAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGA 320

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I +  
Sbjct: 321 TRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVK 375

Query: 692 TITKSIQLAIDE 703
                I   I++
Sbjct: 376 KEDIRILRDIEQ 387


>gi|238502855|ref|XP_002382661.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus flavus NRRL3357]
 gi|317027125|ref|XP_001400167.2| ATP-dependent RNA helicase FAL1 [Aspergillus niger CBS 513.88]
 gi|317148165|ref|XP_001822547.2| ATP-dependent RNA helicase FAL1 [Aspergillus oryzae RIB40]
 gi|152032452|sp|A5AAE5|FAL1_ASPNC RecName: Full=ATP-dependent RNA helicase fal1
 gi|220691471|gb|EED47819.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus flavus NRRL3357]
          Length = 399

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 79/193 (40%), Gaps = 22/193 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   G+    + +     + +   D
Sbjct: 198 ATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCD 257

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 258 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 312

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V I +
Sbjct: 313 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGRFGRKGVAINF 367

Query: 690 ADTITKSIQLAID 702
             +    I   I+
Sbjct: 368 VTSDDVRILRDIE 380


>gi|121719103|ref|XP_001276289.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus clavatus NRRL 1]
 gi|142985525|sp|A1C595|FAL1_ASPCL RecName: Full=ATP-dependent RNA helicase fal1
 gi|119404487|gb|EAW14863.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus clavatus NRRL 1]
          Length = 399

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 79/193 (40%), Gaps = 22/193 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   G+    + +     + +   D
Sbjct: 198 ATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCD 257

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 258 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 312

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V I +
Sbjct: 313 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGRFGRKGVAINF 367

Query: 690 ADTITKSIQLAID 702
             +    I   I+
Sbjct: 368 VTSDDVRILRDIE 380


>gi|330822482|ref|XP_003291680.1| hypothetical protein DICPUDRAFT_156303 [Dictyostelium purpureum]
 gi|325078116|gb|EGC31785.1| hypothetical protein DICPUDRAFT_156303 [Dictyostelium purpureum]
          Length = 397

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSAR---TQVED 570
               ++VSAT     +   +  + + +        +   G+    V +         + D
Sbjct: 196 ATQIVLVSATLTQDVVTMTEKFMSKPVRILLKRDELTLDGIKQFFVSVEKEEWKFGTLCD 255

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TK+  + LTE + E N  V  MH ++   ER EII+  R 
Sbjct: 256 IYDSLTIT-----QAVIFCNTKKKVDQLTEKMREANFTVASMHGDMVQKEREEIIKSFRS 310

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++L  G+D+ +  LV   D         + + +  IGR+ R     V I +
Sbjct: 311 GENRVLITTDILARGIDVQQVSLVINYD-----LPIDRENYLHRIGRSGRFGRKGVAINF 365

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 366 VKNSDIRILRDIEQ 379


>gi|307203141|gb|EFN82321.1| ATP-dependent RNA helicase p62 [Harpegnathos saltator]
          Length = 410

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 19/190 (10%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           L       + QI+      +   +++        + + I+ A +   +I++ V TK+  E
Sbjct: 201 LTLAANHDILQIVEVCEEYEKEAKLK-------TLLENIHDANEDSSKIIIFVETKKKVE 253

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            +T  +         +H +    ER  ++R+ R  K  +LV  ++   GLD+ +   V  
Sbjct: 254 SITRSIRRFGWPAVCIHGDKSQHERDFVLREFRNKKSSILVATDVAARGLDVDDVKYVIN 313

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
            D     +  S    I  IGR  R+ N+    YA    ++ + A      R    +    
Sbjct: 314 FD-----YPSSSEDYIHRIGRTGRSGNTGT-SYALFTPQNARQA------RDLINVLKEA 361

Query: 717 KHNINPQSVK 726
           K  +NPQ +K
Sbjct: 362 KQEVNPQLIK 371


>gi|27463689|gb|AAO15914.1|AF510054_1 vasa-like [Schistocerca gregaria]
          Length = 588

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 11/179 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD---PPVEIRSARTQVEDVYDEINL--A 578
            T++VSAT            +   +    G+V      VE    +    D   ++     
Sbjct: 355 QTVMVSATFPEEIQRLATKFLSNYLFLAVGIVGGACSDVEQIFYKVSKFDKRAKLTEILR 414

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            + G ++L+ V TKR+A+ L  +L E+      +H +    +R E + D + G+  +LV 
Sbjct: 415 EEGGKKVLVFVETKRIADFLAAFLCEQKFPTTSIHGDRLQSQREEALYDFKSGRMGILVA 474

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             +   GLDI     V   D  K     S    +  IGR  R  N      + D    +
Sbjct: 475 TAVAARGLDIKNVAHVINYDLPK-----SIDEYVHRIGRTGRVGNRGRATSFYDPDVDA 528


>gi|88607738|ref|YP_504735.1| transcription-repair coupling factor [Anaplasma phagocytophilum HZ]
 gi|88598801|gb|ABD44271.1| transcription-repair coupling factor [Anaplasma phagocytophilum HZ]
          Length = 1139

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 81/235 (34%), Gaps = 28/235 (11%)

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLE---RNDCIVVSSVSCIYGIGSVESYSQM 293
             P  DT   K +S +  +   R      LL    +   ++ +  + I  +    + S  
Sbjct: 61  LFPAWDTCTYKHTSPSSYVMTHRVKCLLDLLSVGSKPYILLTTISALIQKVLPKNAVSSS 120

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR-GTFRVCGDSIEIFPSHLEDVAWRVSM 352
            + ++ G S+   EL   L++  Y +    +   G+F V GD ++IF + + +   R+  
Sbjct: 121 TLHIEAGKSLSMDELTLHLIEHGYVKSSTVVQEVGSFAVRGDIVDIFQA-VNENPVRIYF 179

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
             + +E I  F P T                        + +A + IK +    +    +
Sbjct: 180 DYDIVESIKFFDPDTQITCSE------------QILDIVIFSASELIKNDGN--IARFSE 225

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE 467
           +   L +           E +      +  E     L      +   TLF+YI E
Sbjct: 226 KCSHLRSNN-----PPLYEAVVHRQKFEGEEQLLPLL----QADALVTLFDYIQE 271



 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 11/172 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             + +SATP    L      I +  I+R   +    VEI       + +   I     +G
Sbjct: 735 HVLSLSATPIPRTLHMSLSNIKDLSILRTPPIGRTTVEISITHFDEKTIKTAILNEVNRG 794

Query: 583 LRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            R+  T       E     L + + E  I V   H     L   +I+ D   GKF +L+ 
Sbjct: 795 GRVFFTCPLIADIEPVLTRLQKLVPEVKIAVA--HGGTAPLALDKIMNDFFDGKFSLLLT 852

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            +++  G+DIP    + I +AD  G  +    L Q  GR  R+         
Sbjct: 853 TSIIESGIDIPFANTIIIYNADMFGLAQ----LYQLKGRVGRSTTQGYAYLI 900


>gi|47226775|emb|CAG06617.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 558

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 13/144 (9%)

Query: 552 TGLVDPPVEI--RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           T +    +E+   S R Q+ D+     +      R ++ V TKR A+ +  +L + N+  
Sbjct: 394 TDVEQSFIEMSKFSKREQLLDIVRATGM-----ERTMVFVETKRQADFIAAHLCQENVPT 448

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H + +  ER   + + R GK  VLV  ++   GLDIP+   V   D        +  
Sbjct: 449 TSIHGDREQREREMALANFRSGKCPVLVATSVAARGLDIPDVQHVINFD-----LPNNID 503

Query: 670 SLIQTIGRAARNVN-SKVILYADT 692
             +  IGR  R  N  + + + D 
Sbjct: 504 EYVHRIGRTGRCGNVGRAVSFYDP 527


>gi|60501849|gb|AAX22124.1| DEAD-box RNA-dependent helicase p68 [Carassius auratus]
          Length = 611

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 12/147 (8%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++  + ++ V TKR  +DLT  +         +H +    ER  ++ + + GK  +L+  
Sbjct: 341 EKENKTIIFVETKRRCDDLTRSMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIAT 400

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   GLD+ +   V   D     +  +    I  IGR AR+  +    Y      +++ 
Sbjct: 401 DVASRGLDVEDIKFVINYD-----YPNNSEDYIHRIGRTARSQKTGTA-YTFFTPNNMKQ 454

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVK 726
           A D  +  RE          INP+ ++
Sbjct: 455 AHDLVSVLREANQA------INPKLIQ 475


>gi|86148322|ref|ZP_01066616.1| putative ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|85833877|gb|EAQ52041.1| putative ATP-dependent RNA helicase [Vibrio sp. MED222]
          Length = 428

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 79/214 (36%), Gaps = 36/214 (16%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           +  T++ SAT              EQ+      L++ P+E++        +   +    +
Sbjct: 192 KKQTLLFSAT------------FPEQVKTLTHELLNDPIEVQLQSANASTLVQRV-FEVE 238

Query: 581 QGLRI---------------LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +G +                L+ V  K   E L + LY+R I     H +     R  I+
Sbjct: 239 KGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRIL 298

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D + G+ DVL+  ++   GLDI +  +V   D       RS +  +  IGR+ R     
Sbjct: 299 EDFKSGEIDVLIATDIAARGLDIEKLPVVINFD-----LPRSPSDYMHRIGRSGRAGEVG 353

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
           + L            I E  ++ + +LE  +   
Sbjct: 354 LALSLIDHEDYHHFTIIE--KKNKIRLEREQIEG 385


>gi|320037809|gb|EFW19746.1| ATP-dependent RNA helicase DED1 [Coccidioides posadasii str.
           Silveira]
          Length = 666

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ L+E+L  +N     +H +    ER   +   R G+  +LV   +   
Sbjct: 446 TLIFVETKRMADSLSEFLINQNFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAAR 505

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           GLDIP    V   D             +  IGR  R  N+ 
Sbjct: 506 GLDIPNVTHVVNYD-----LPTDIDDYVHRIGRTGRAGNTG 541


>gi|226437753|gb|ACO56244.1| putative DEAD-box RNA helicase [Caenorhabditis elegans]
          Length = 708

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 8/134 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D ++      L  L+ V TKR A DL  YL  +N  V  +H ++K  ER + +   R 
Sbjct: 482 LMDLLDATGDSSL-TLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRT 540

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI--L 688
           G   +LV   +   GLDIP    V   D             +  IGR  R  N  +    
Sbjct: 541 GTAPILVATAVAARGLDIPNVKHVINYD-----LPSDVDEYVHRIGRTGRVGNVGLATSF 595

Query: 689 YADTITKSIQLAID 702
           + D      +  +D
Sbjct: 596 FNDKNRNIARELMD 609


>gi|302408591|ref|XP_003002130.1| ATP-dependent RNA helicase FAL1 [Verticillium albo-atrum VaMs.102]
 gi|261359051|gb|EEY21479.1| ATP-dependent RNA helicase FAL1 [Verticillium albo-atrum VaMs.102]
          Length = 401

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 200 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCD 259

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R 
Sbjct: 260 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQ 314

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 315 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 369

Query: 691 DTITK 695
            T   
Sbjct: 370 VTSED 374


>gi|303314883|ref|XP_003067450.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240107118|gb|EER25305.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 668

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ L+E+L  +N     +H +    ER   +   R G+  +LV   +   
Sbjct: 448 TLIFVETKRMADSLSEFLINQNFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAAR 507

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           GLDIP    V   D             +  IGR  R  N+ 
Sbjct: 508 GLDIPNVTHVVNYD-----LPTDIDDYVHRIGRTGRAGNTG 543


>gi|237807374|ref|YP_002891814.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237499635|gb|ACQ92228.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 642

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 75/193 (38%), Gaps = 9/193 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +Q   +L+ V TK  AE+LT  L  R      +H ++    R   +  L+ G+ D+L+ 
Sbjct: 244 VEQYDALLVFVRTKTAAEELTSKLSARGHSCEALHGDIPQKLRERTVEKLKAGQIDILIA 303

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLD+     V   D           S +  IGR  R   +   IL+     + +
Sbjct: 304 TDVAARGLDVERITHVVNYD-----IPYDTESYVHRIGRTGRAGRTGDAILFVAPRERRM 358

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKE---KIMEVIDPILLEDAATTNISIDAQQLS 754
              I++ TR+  + ++     +IN   ++    +I E +D           I+   +  S
Sbjct: 359 LRMIEQATRQPIEPMQMPTAKDINKHRLERFKLQIRETLDSEEDLQPFQQIINEFLEDES 418

Query: 755 LSKKKGKAHLKSL 767
                  A L  +
Sbjct: 419 TDPLDLCAALAKM 431


>gi|168038086|ref|XP_001771533.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677260|gb|EDQ63733.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 684

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 76/190 (40%), Gaps = 16/190 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           R  T++ +AT      +    +++  +    G  D     +S    VE V         +
Sbjct: 327 RRQTLMYTATWPKEVRKIAGDLLINPVQVNIGNTDELAANKSITQNVEVVVPYEKQRRLE 386

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  + + G +I++   TKRM + L+  L  R+     +H +    ER  ++   R G+ 
Sbjct: 387 QILRSQEPGSKIIIFCSTKRMCDTLSRNLG-RDFGAAAIHGDKSQSERDFVLSQFRTGRT 445

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL--YAD 691
            +LV  ++   GLDI +  +V   D     F       +  IGR  R   + +    +++
Sbjct: 446 PILVATDVAARGLDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGRAGATGLAYTFFSE 500

Query: 692 TITKSIQLAI 701
              K  +  I
Sbjct: 501 QDGKYAKELI 510


>gi|115437508|ref|XP_001217828.1| eukaryotic initiation factor 4A-12 [Aspergillus terreus NIH2624]
 gi|121734188|sp|Q0CAS8|FAL1_ASPTN RecName: Full=ATP-dependent RNA helicase fal1
 gi|114188643|gb|EAU30343.1| eukaryotic initiation factor 4A-12 [Aspergillus terreus NIH2624]
          Length = 399

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 79/193 (40%), Gaps = 22/193 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   G+    + +     + +   D
Sbjct: 198 ATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCD 257

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 258 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 312

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V I +
Sbjct: 313 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGRFGRKGVAINF 367

Query: 690 ADTITKSIQLAID 702
             +    I   I+
Sbjct: 368 VTSDDVRILRDIE 380


>gi|119175420|ref|XP_001239942.1| hypothetical protein CIMG_09563 [Coccidioides immitis RS]
 gi|118582048|sp|Q1DJF0|DED1_COCIM RecName: Full=ATP-dependent RNA helicase DED1
          Length = 659

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ L+E+L  +N     +H +    ER   +   R G+  +LV   +   
Sbjct: 439 TLIFVETKRMADSLSEFLINQNFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAAR 498

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           GLDIP    V   D             +  IGR  R  N+ 
Sbjct: 499 GLDIPNVTHVVNYD-----LPTDIDDYVHRIGRTGRAGNTG 534


>gi|152974078|ref|YP_001373595.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152022830|gb|ABS20600.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 511

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 103/257 (40%), Gaps = 16/257 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P ++      Q +  +D +    
Sbjct: 188 HQTLLFSATMPEPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL 247

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R      +H ++   +R+ ++R  + G  +VLV
Sbjct: 248 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 307

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   + + +   T  +  
Sbjct: 308 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKTGLAMLFVTPREMG 362

Query: 698 Q-LAIDETTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           Q   I+ TT+R+  +++    ++      + + EK+   I+   L  +    I+ +  + 
Sbjct: 363 QLKNIERTTKRKMDRMKAPTLDEALEGQQRLIAEKLQSAIENDNL--SYYKRIAEEMLEE 420

Query: 754 SLSKKKGKAHLKSLRKQ 770
           + S     A LK + K+
Sbjct: 421 NDSVAVVAAALKMMTKE 437


>gi|170754379|ref|YP_001780277.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B1 str.
           Okra]
 gi|169119591|gb|ACA43427.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B1 str.
           Okra]
          Length = 425

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 92/254 (36%), Gaps = 41/254 (16%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
                ++ SAT    E+ +    IV+  IR        VE+  A + V+ +  E+    +
Sbjct: 179 KVRQNLLFSAT-MPSEITKLVDSIVKDPIR--------VEVTPASSTVDTITQEVYHVRK 229

Query: 581 QGLRIL--------------LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +  R L              +   TKR A  + + L E  I    +H       R   + 
Sbjct: 230 KQKRALLKHLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALN 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + + GK  VLV  ++   G+D+ E   V   +           + +  IGR  R     V
Sbjct: 290 NFKEGKIRVLVATDIAARGIDVNELSHVFNYN-----LPDVPETYVHRIGRTGRAGAKGV 344

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
            +            I+ET   +  +   NK+    P  V E+    I  I  ++    N 
Sbjct: 345 AISFCD--------IEETKSLKAIEKLINKE---IP--VVEEHPYKIRHINEDEVKKENT 391

Query: 747 SIDAQQLSLSKKKG 760
           + ++ +   SK++G
Sbjct: 392 NNNSNKKPSSKRQG 405


>gi|308810286|ref|XP_003082452.1| putative nicotiana eukaryotic (ISS) [Ostreococcus tauri]
 gi|116060920|emb|CAL57398.1| putative nicotiana eukaryotic (ISS) [Ostreococcus tauri]
          Length = 404

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 23/202 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              ++VSAT  +  LE     + + +        +   G+    V +     + +   D+
Sbjct: 205 TQVVLVSATLPNEVLEMTGKFMTDPLRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 264

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TK+  + LTE + + N  V  MH ++   ER EI+ + R G
Sbjct: 265 YDTLTIT-----QAVIFCNTKKKVDWLTEKMRQNNFTVSAMHGDMPQKEREEIMNEFRGG 319

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
              VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +   
Sbjct: 320 TTRVLITTDMWARGIDVQQVSLVINYD-----LPGNRENYIHRIGRSGRYGRKGVAINFV 374

Query: 692 TITKSIQLAIDETTRRREKQLE 713
                   A+ +  +    Q++
Sbjct: 375 KEEDV--RALRDIEQYYSTQID 394


>gi|39996017|ref|NP_951968.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
 gi|39982782|gb|AAR34241.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
          Length = 447

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 70/199 (35%), Gaps = 14/199 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI----RSARTQVEDVYDEINL 577
           R  T++ SAT         Q I+V+ +    G V P V +          ++       L
Sbjct: 175 RRQTLLFSATMPIDIRTLAQDILVDPVTVQVGTVAPAVTVAHALYPVEQHLKTPLLLELL 234

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                  +L+   TK  A+ L E L +   R   +   +    R   +   R G F +LV
Sbjct: 235 RHTDTESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   G+D+ +   V   D        +  + I  IGR  R   S        +   +
Sbjct: 295 ATDIAARGIDVSQVSHVINYD-----IPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGA 349

Query: 697 IQLAIDETT----RRREKQ 711
           +  AI+ +      RR  Q
Sbjct: 350 MVRAIERSLGAPIERRTVQ 368


>gi|170105186|ref|XP_001883806.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164641441|gb|EDR05702.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 662

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 79/208 (37%), Gaps = 13/208 (6%)

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           G  +PS  D + L F          +          L+    + V ++   +  +   +E
Sbjct: 363 GEDMPSTADRQTLMFSATFPRDIQML------AKDFLKDYVFLSVGRVGSTSENITQKIE 416

Query: 561 IRSARTQVEDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
                 +   + D +    ++ L   L+ V TKRMA+ L+++L   N+    +H +    
Sbjct: 417 YVEDLDKRSVLLDILASQPKEDLGLTLVFVETKRMADMLSDFLMGNNLPATSIHGDRTQR 476

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER   ++  R G+  ++V   +   GLDIP    V   D             +  IGR  
Sbjct: 477 EREMALQTFRTGRTPIMVATAVAARGLDIPNVTHVVNYD-----LPSDIDDYVHRIGRTG 531

Query: 680 RNVNSKV-ILYADTITKSIQLAIDETTR 706
           R  N+ V   + +   K+I   + E  R
Sbjct: 532 RAGNTGVSTAFFNRGNKNIVRDLVELLR 559


>gi|146096170|ref|XP_001467723.1| ATP-dependent RNA helicase [Leishmania infantum JPCM5]
 gi|134072089|emb|CAM70788.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
 gi|322501693|emb|CBZ36774.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 614

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 17/194 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVEDVYDEINLA 578
            T++ SAT      +  +  +        G V    E     +R     ++     + + 
Sbjct: 324 QTLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQDVRWVED-MDKRGCLLEVL 382

Query: 579 AQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            + QG R+L+ V  KR A+ L  YL +  I    +H +    ER E +   + G   VLV
Sbjct: 383 KEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCRVLV 442

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADT--- 692
             ++   GLDIP   +V   D        +    +  IGR  R       +  + D    
Sbjct: 443 ATDVASRGLDIPNVAVVVQYD-----LPSNIDDYVHRIGRTGRAGKRGTAISFFNDKNRN 497

Query: 693 ITKSIQLAIDETTR 706
           I   +   + ET +
Sbjct: 498 IVDDLIPLLRETNQ 511


>gi|114630811|ref|XP_507825.2| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan troglodytes]
          Length = 783

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVY- 572
           P T++ SAT   W         +     V+ I + T      VE   I+   TQ   V  
Sbjct: 369 PQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIG 428

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++         + +H ++   +R   ++  R G 
Sbjct: 429 DVIRVYSGHQGRTIIFCETKKEAQELSQ-NSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 488 FGVLVATNVAARGLDIPEVDLVIQSSPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 542

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QL           Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 543 HKEEYQL----------VQVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 590

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 591 ISHFKQSAEKLIEE 604


>gi|1170507|sp|P41380|IF4A3_NICPL RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3
 gi|19699|emb|CAA43514.1| nicotiana eukaryotic translation initiation factor 4A [Nicotiana
           plumbaginifolia]
          Length = 391

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             +++SAT  +  LE     + + +        +   G+    V +     + +   D+Y
Sbjct: 193 QVVLISATLPNEILEITSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLY 252

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + LT  + E N  V  MH ++   ER  I+ + R G 
Sbjct: 253 DTLTIT-----QAVIFCNTKRKVDWLTSKMRENNFTVSSMHGDMPQKERDAIMAEFRGGT 307

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I +  
Sbjct: 308 TRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVK 362

Query: 692 TITKSIQLAIDE 703
           +    I   I++
Sbjct: 363 SDDIKILRDIEQ 374


>gi|71745728|ref|XP_827494.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70831659|gb|EAN77164.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 735

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 91/245 (37%), Gaps = 19/245 (7%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR-LPSCMDNRPLRFEEWNCLRPTTIVV 528
            L +DE+   +        G   +   L    +  +PS  + + L F       P  I+ 
Sbjct: 437 FLILDEADRMLE------MGFEEQIEYLVASRYSDMPSSEERQTLMFS---ATFPQRILN 487

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
            A    +   +   + V ++   T  +   +E      + + ++D I    Q  L +L+ 
Sbjct: 488 LA--KRYLRPKYYLLTVGRVGSTTKNITQKLERVPEAEKKDKLFDIIYKQKQTDL-VLIF 544

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TKR AE L   L    I    +H + +  +R   ++D + G   +LV  ++   GLDI
Sbjct: 545 VETKRSAEQLHSALKSSGIPSTTIHGDRRQSDREIALKDFKSGITPILVATDVASRGLDI 604

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
           P    V   D  KE            IGR  R  N  V         +  LA++     R
Sbjct: 605 PNVAHVIQYDLPKE-----MDDYTHRIGRTGRAGNKGVATSFYD-RNNRNLAVELYHYLR 658

Query: 709 EKQLE 713
           E + E
Sbjct: 659 EHEQE 663


>gi|189193873|ref|XP_001933275.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187978839|gb|EDU45465.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 686

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TKRMA+ L+++L  +      +H +    ER + +   R G+  +LV   +   G
Sbjct: 458 LIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRTGRCPILVATAVAARG 517

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           LDIP    V   D             +  IGR  R  N+ +  
Sbjct: 518 LDIPNVTHVVNYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 555


>gi|115453811|ref|NP_001050506.1| Os03g0566800 [Oryza sativa Japonica Group]
 gi|122246919|sp|Q10I26|RH34_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 34
 gi|13957631|gb|AAK50586.1|AC084404_11 putative translation initiation factor [Oryza sativa Japonica
           Group]
 gi|108709369|gb|ABF97164.1| Eukaryotic initiation factor 4A-3, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113548977|dbj|BAF12420.1| Os03g0566800 [Oryza sativa Japonica Group]
          Length = 404

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 75/192 (39%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
              ++SAT     LE     + + +        +   G+    V +     + +   D+Y
Sbjct: 206 QVCLISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLY 265

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R G 
Sbjct: 266 DTLTIT-----QAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGA 320

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I +  
Sbjct: 321 TRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVK 375

Query: 692 TITKSIQLAIDE 703
                I   I++
Sbjct: 376 KEDIRILRDIEQ 387


>gi|56965701|ref|YP_177435.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
 gi|56911947|dbj|BAD66474.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
          Length = 493

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 89/246 (36%), Gaps = 26/246 (10%)

Query: 524 TTIVVSAT-PGSWELEQCQGI-------IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT P   E    + +       +  + +    +    +E+        DV   +
Sbjct: 178 QTLLFSATMPKRMESLASKFMKNPTRIAVKAKEVTMENIAQQFIEVHEREK--FDVLCRL 235

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L I +   TKR  ++L E L +R  R   +H ++   +R  ++R  + G  DV
Sbjct: 236 IDLETPDLSI-VFGRTKRRVDELAEALIKRGYRAEGLHGDLNQAKRNSVLRKFKEGLIDV 294

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   S + I  A    
Sbjct: 295 LVATDVAARGLDISGVTHVFNFD-----LPQDPESYVHRIGRTGRAGRSGIAITLATKPE 349

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
           +     I+  ++RR  Q          P+   E+ +E      L +        +     
Sbjct: 350 REHVKLIESVSKRRMTQR---------PKPTYEEALEGQKQSTLNELRELAAKGEQDSYR 400

Query: 755 LSKKKG 760
           ++ K+ 
Sbjct: 401 VAAKEL 406


>gi|323346404|gb|EGA80692.1| Ded1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 608

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ LT++L  +N R   +H +    ER   +   R G   +LV   +   
Sbjct: 406 TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAAR 465

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           GLDIP    V   D             +  IGR  R  N+ +         S
Sbjct: 466 GLDIPNVTHVINYD-----LPSDVDDYVHRIGRTGRAGNTGLATAFFNSENS 512


>gi|323307275|gb|EGA60555.1| Ded1p [Saccharomyces cerevisiae FostersO]
          Length = 605

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ LT++L  +N R   +H +    ER   +   R G   +LV   +   
Sbjct: 403 TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAAR 462

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           GLDIP    V   D             +  IGR  R  N+ +         S
Sbjct: 463 GLDIPNVTHVINYD-----LPSDVDDYVHRIGRTGRAGNTGLATAFFNSENS 509


>gi|323302935|gb|EGA56739.1| Ded1p [Saccharomyces cerevisiae FostersB]
          Length = 604

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ LT++L  +N R   +H +    ER   +   R G   +LV   +   
Sbjct: 402 TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAAR 461

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           GLDIP    V   D             +  IGR  R  N+ +         S
Sbjct: 462 GLDIPNVTHVINYD-----LPSDVDDYVHRIGRTGRAGNTGLATAFFNSENS 508


>gi|297686801|ref|XP_002820927.1| PREDICTED: nucleolar RNA helicase 2-like [Pongo abelii]
          Length = 783

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVY- 572
           P T++ SAT   W         +     V+ I + T      VE   I+   TQ   V  
Sbjct: 369 PQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIG 428

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++         + +H ++   +R   ++  R G 
Sbjct: 429 DVIRVYSGHQGRTIIFCETKKEAQELSQ-NSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 488 FGVLVATNVAARGLDIPEVDLVIQSSPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 542

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QL           Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 543 HKEEYQL----------VQVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 590

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 591 ISHFKQSAEKLIEE 604


>gi|259149685|emb|CAY86489.1| Ded1p [Saccharomyces cerevisiae EC1118]
          Length = 604

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ LT++L  +N R   +H +    ER   +   R G   +LV   +   
Sbjct: 402 TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAAR 461

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           GLDIP    V   D             +  IGR  R  N+ +         S
Sbjct: 462 GLDIPNVTHVINYD-----LPSDVDDYVHRIGRTGRAGNTGLATAFFNSENS 508


>gi|187960121|ref|NP_001120807.1| nucleolar RNA helicase 2 [Danio rerio]
 gi|169642686|gb|AAI60629.1| Ddx21 protein [Danio rerio]
          Length = 759

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 95/258 (36%), Gaps = 30/258 (11%)

Query: 520 CLRPTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--- 570
             +P T++ SAT  SW  +      + Q I V+ I + T      VE  +          
Sbjct: 346 EQKPQTLLFSATCPSWVYDVAKKYMRSQFIHVDLIGKKTQKAATTVEHLAIACHWSQRAS 405

Query: 571 -VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + D I + +    R ++   TK+ A +L+          + +H ++   +R   ++  R
Sbjct: 406 VIGDVIQVYSGSHGRTIVFCETKKEATELS-LNTSIKQSAQSLHGDIPQKQREVTLKGFR 464

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G F+VLV  N+   GLDIPE  LV               S I   GR  R   + + + 
Sbjct: 465 NGSFEVLVATNVAARGLDIPEVDLVIQSSP-----PNDVESYIHRSGRTGRAGRTGICIC 519

Query: 690 ADTITKSIQLAIDETTRRREKQLEH-NKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                           R+ E QL+   +K  I  + V       I     +DA     S+
Sbjct: 520 FY-------------QRKEESQLKFVEQKAGITFKRVGVPTAYDIIQSSSKDAVRFLDSV 566

Query: 749 DAQQLSLSKKKGKAHLKS 766
            A  +   ++  +  ++ 
Sbjct: 567 PAVAVGYFREAAQELIQQ 584


>gi|160380641|sp|A6ZP47|DED1_YEAS7 RecName: Full=ATP-dependent RNA helicase DED1
 gi|151945294|gb|EDN63537.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|190407515|gb|EDV10782.1| hypothetical protein SCRG_01592 [Saccharomyces cerevisiae RM11-1a]
 gi|207341041|gb|EDZ69208.1| YOR204Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256269590|gb|EEU04872.1| Ded1p [Saccharomyces cerevisiae JAY291]
 gi|323335425|gb|EGA76711.1| Ded1p [Saccharomyces cerevisiae Vin13]
 gi|323352139|gb|EGA84676.1| Ded1p [Saccharomyces cerevisiae VL3]
          Length = 604

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ LT++L  +N R   +H +    ER   +   R G   +LV   +   
Sbjct: 402 TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAAR 461

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           GLDIP    V   D             +  IGR  R  N+ +         S
Sbjct: 462 GLDIPNVTHVINYD-----LPSDVDDYVHRIGRTGRAGNTGLATAFFNSENS 508


>gi|6324778|ref|NP_014847.1| Ded1p [Saccharomyces cerevisiae S288c]
 gi|118411|sp|P06634|DED1_YEAST RecName: Full=ATP-dependent RNA helicase DED1; AltName: Full=DEAD
           box protein 1
 gi|3647|emb|CAA40546.1| Ded1p (Spp81p) [Saccharomyces cerevisiae]
 gi|1420479|emb|CAA99419.1| DED1 [Saccharomyces cerevisiae]
 gi|285815083|tpg|DAA10976.1| TPA: Ded1p [Saccharomyces cerevisiae S288c]
          Length = 604

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ LT++L  +N R   +H +    ER   +   R G   +LV   +   
Sbjct: 402 TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAAR 461

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           GLDIP    V   D             +  IGR  R  N+ +         S
Sbjct: 462 GLDIPNVTHVINYD-----LPSDVDDYVHRIGRTGRAGNTGLATAFFNSENS 508


>gi|1230564|gb|AAB02546.1| Gu protein [Homo sapiens]
          Length = 801

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVY- 572
           P T++ SAT   W         +     V+ I + T      VE   I+   TQ   V  
Sbjct: 387 PQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIG 446

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++         + +H ++   +R   ++  R G 
Sbjct: 447 DVIRVYSGHQGRTIIFCETKKEAQELSQ-NSAIKQDAQSLHGDIPQKQREITLKGFRNGS 505

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 506 FGVLVATNVAARGLDIPEVDLVIQSSPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 560

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QL           Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 561 HKEEYQL----------VQVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 608

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 609 ISHFKQSAEKLIEE 622


>gi|227524|prf||1705300A ATP dependent RNA helicase
          Length = 604

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ LT++L  +N R   +H +    ER   +   R G   +LV   +   
Sbjct: 402 TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAAR 461

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           GLDIP    V   D             +  IGR  R  N+ +         S
Sbjct: 462 GLDIPNVTHVINYD-----LPSDVDDYVHRIGRTGRAGNTGLATAFFNSENS 508


>gi|322696830|gb|EFY88617.1| ATP-dependent RNA helicase dbp3 [Metarhizium acridum CQMa 102]
          Length = 591

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 8/150 (5%)

Query: 549 IRPTGLVDPPVEI---RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           ++    +   VE+   +    ++  +  +     Q+  RIL+  L K+ A  +  +L  +
Sbjct: 391 LQANTRITQKVEVVDPKDKEFRLLQILKQHQQGKQKNDRILVFCLYKKEATRVENFLSRK 450

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            IRV  +H ++K  +R   +   + G+  VLV  ++   GLDIPE  LV  +      F 
Sbjct: 451 GIRVGGIHGDLKQEQRTRSLEAFKTGQTPVLVATDVAARGLDIPEVKLVINV-----TFP 505

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITK 695
            +    +  IGR  R  N+       T+  
Sbjct: 506 LTIEDYVHRIGRTGRAGNTGEAHTLFTVQD 535


>gi|313638753|gb|EFS03844.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL S4-171]
          Length = 525

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 98/256 (38%), Gaps = 16/256 (6%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P     E+         I+   +    +E    +   ++ +D ++    
Sbjct: 177 QTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLD 236

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV 
Sbjct: 237 VQAPELAIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R       I +        
Sbjct: 297 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGY 351

Query: 698 QLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
              ++ETT++R + L+    ++      +   EKI E I    L D  T    +  +  +
Sbjct: 352 LRIVEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLSDYKTYANQLLEKYDA 411

Query: 755 LSKKKGKAHLKSLRKQ 770
                  A LK L K+
Sbjct: 412 TDIA--AAMLKMLAKE 425


>gi|313619814|gb|EFR91407.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
           S4-378]
          Length = 518

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 98/256 (38%), Gaps = 16/256 (6%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P     E+         I+   +    +E    +   ++ +D ++    
Sbjct: 179 QTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLD 238

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV 
Sbjct: 239 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 298

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R       I +        
Sbjct: 299 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGY 353

Query: 698 QLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
              ++ETT++R + L+    ++      +   EKI E I    L D  T    +  +  +
Sbjct: 354 LRIVEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDA 413

Query: 755 LSKKKGKAHLKSLRKQ 770
                  A LK L K+
Sbjct: 414 TDIA--AAMLKMLAKE 427


>gi|195439780|ref|XP_002067737.1| GK12550 [Drosophila willistoni]
 gi|194163822|gb|EDW78723.1| GK12550 [Drosophila willistoni]
          Length = 800

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 77/209 (36%), Gaps = 21/209 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
             ++ SAT      +  +  +   I    G +           V++     ++  + + +
Sbjct: 314 QVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNIRQIVDVCDESEKIVKLINLL 373

Query: 576 NLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              + +   + ++ V TK+  +++T  +  +  R   +H +    ER  ++   R G+  
Sbjct: 374 TDISAESETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHS 433

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   GLD+ +   V   D     +  +    +  IGR  R+ N+    Y     
Sbjct: 434 ILVATDVAARGLDVDDVKFVINYD-----YPSNSEDYVHRIGRTGRSNNTGTA-YTLFTH 487

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            +   A D        Q+       INP+
Sbjct: 488 SNANKAND------LIQVLREANQTINPK 510


>gi|127513728|ref|YP_001094925.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126639023|gb|ABO24666.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 408

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 75/222 (33%), Gaps = 16/222 (7%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D       ++ G+ +  F     + + GF          L  E        T++ SAT
Sbjct: 136 LLDLHRRGAAKLDGVAQLVFDEADRMLDMGFADEIAELMALLPSER------QTLLFSAT 189

Query: 532 PGSWELEQCQGIIV---EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG--LRIL 586
                L      +       + P       VE R      E  +  ++    +G   R+L
Sbjct: 190 LDDKVLALSHRWLKQPKRIAVSPQNSASQDVEQRVYAVDSERKFALLSHLINKGDWQRVL 249

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +    K  A+ L   L E+ I  +  H ++    R +++ D R G+  VLV  ++   G+
Sbjct: 250 VFSRKKVAADKLAARLCEQGIMAKAFHGDLGQGAREQVLADFRRGEIKVLVATDVAARGI 309

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           DI     V   +             +  IGR  R     V +
Sbjct: 310 DIESLDYVVNYE-----LPYVAQDYVHRIGRTGRAGKQGVAV 346


>gi|313109386|ref|ZP_07795348.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
 gi|310881850|gb|EFQ40444.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
          Length = 449

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 99/284 (34%), Gaps = 46/284 (16%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +           ++ V   Q+  +   +  R     + GF      +   L   
Sbjct: 131 TPGRLLD--------LYRQNAVKFAQLQALVLDEADRM---LDLGF----ARELDELFAA 175

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
                +  T++ SAT             +  + R        +E+    T  + V   + 
Sbjct: 176 L--PRKRQTLLFSAT---------FSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLV 224

Query: 577 LAAQQG--------------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
              ++                + L+   T++  E+L   L  + I    +H +     R+
Sbjct: 225 PVDKKRKAELFCHLLQANRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARL 284

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             ++  + G+ D+LV  ++   GLDI E  LV   D             I   GRA  + 
Sbjct: 285 RALQRFKAGEVDLLVATDVAARGLDIEEMPLVVNFDLPIV--AEDYVHRIGRTGRAGASG 342

Query: 683 NSKVILYADTIT--KSIQLAIDETTRRREKQLEHNKKHNINPQS 724
            +  ++ AD +    +I+  I +T +RRE + +   +H   PQ+
Sbjct: 343 QAVSLVCADEVELLAAIETLIGQTLQRRE-EPDFAPEHR-VPQT 384


>gi|260459532|ref|ZP_05807787.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259035086|gb|EEW36342.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 477

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 81/250 (32%), Gaps = 38/250 (15%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            V E  + +     +   +  R     + GF       N   R  +       T + SAT
Sbjct: 157 LVREGDLILSDTKWLVLDEGDRM---LDMGFI------NDVKRIAKATAPDRQTALFSAT 207

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR------- 584
                 E  +G++   +          +E+    T   ++   +  A  +  R       
Sbjct: 208 MPDEIAELAKGLLKNPV---------RIEVSPQSTAAAEIVQGVVFARTKQKRQVLSTML 258

Query: 585 -------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                  +++   TK  A+ +T+ L     +   +H       R + + D R G   +LV
Sbjct: 259 ADAAMKSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFRDGSVRILV 318

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
             ++   G+D+P    V   D   E       S +  IGR  RN  +   I   D    S
Sbjct: 319 ATDIAARGIDVPGISHVVNFDLPDE-----AESYVHRIGRTGRNGMDGIAITLCDPSENS 373

Query: 697 IQLAIDETTR 706
               ++   R
Sbjct: 374 KLRQVERIIR 383


>gi|193664366|ref|XP_001952053.1| PREDICTED: eukaryotic initiation factor 4A-like [Acyrthosiphon
           pisum]
          Length = 411

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 11/134 (8%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD +++      + ++   T+R  E LTE +  +   V  MH E+   +R  I+R  R
Sbjct: 270 DLYDTLSIT-----QAVIFCNTRRKVEWLTENMRLKTFTVSAMHGEMDQRQRELIMRQFR 324

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G   VL+  +LL  G+D+ +  LV   D        ++ + I  IGR+ R     V I 
Sbjct: 325 SGSSRVLITTDLLARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAIN 379

Query: 689 YADTITKSIQLAID 702
           +     K     I+
Sbjct: 380 FITEDDKRAMKDIE 393


>gi|91783626|ref|YP_558832.1| putative ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans
           LB400]
 gi|91687580|gb|ABE30780.1| Putative ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans
           LB400]
          Length = 523

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/300 (19%), Positives = 103/300 (34%), Gaps = 31/300 (10%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLRFEEWNCLRPTTIVVS 529
            +D +     Q+  +          + + GF   L +     P        +R  T++ S
Sbjct: 177 LLDLNRQNAVQLDQVQTLVLDEADRMLDLGFARELNAVFAALP--------VRRQTLLFS 228

Query: 530 ATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVE-----DVYDEINLAAQQGL 583
           AT          GI+ + + I  +       +IR     V+     D++  +   A    
Sbjct: 229 ATFTDDIRAMAAGILRDPVNISVSPPNATASKIRQWVVTVDKKNKPDLFMHLV--AGNNW 286

Query: 584 R-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           R  L+ V T+   + L   L      V  +H +     R+  +   + G+  +LV  ++ 
Sbjct: 287 RHALVFVKTRNGVDYLAAMLDAAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVA 346

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAI 701
             GLDI +  LV  +D             +  IGR  R   S V +            AI
Sbjct: 347 ARGLDIDDLPLVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAI 401

Query: 702 DETTR---RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
           +   R   RRE++     +H   PQ+      E+I        +    +   +   LSKK
Sbjct: 402 EALIRQTLRREEEPGFEAEHR-VPQT--SATGEIIRKPKKPKKSKVPQAAPREMQVLSKK 458


>gi|71995718|ref|NP_497615.2| hypothetical protein Y71H2AM.19 [Caenorhabditis elegans]
 gi|66275464|gb|AAY43989.1| Hypothetical protein Y71H2AM.19 [Caenorhabditis elegans]
          Length = 643

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 8/134 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D ++      L  L+ V TKR A DL  YL  +N  V  +H ++K  ER + +   R 
Sbjct: 417 LMDLLDATGDSSL-TLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRT 475

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI--L 688
           G   +LV   +   GLDIP    V   D             +  IGR  R  N  +    
Sbjct: 476 GTAPILVATAVAARGLDIPNVKHVINYD-----LPSDVDEYVHRIGRTGRVGNVGLATSF 530

Query: 689 YADTITKSIQLAID 702
           + D      +  +D
Sbjct: 531 FNDKNRNIARELMD 544


>gi|213402561|ref|XP_002172053.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000100|gb|EEB05760.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces japonicus
           yFS275]
          Length = 626

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 14/188 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVE--DVYDEIN 576
            T++ SAT         +  + + +    G V    E     +     Q +   + D ++
Sbjct: 359 QTLMFSATFPRDIQVLARDFLKDYVFLSVGRVGSTSENITQKVVFVEDQEKRSYLLDILH 418

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               +GL  L+ V TKRMA+ LT++L   +     +H +    ER   +   R G+  ++
Sbjct: 419 TLPPEGL-TLIFVETKRMADALTDFLLNSSFPATSIHGDRTQRERERALELFRSGRSSIM 477

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V   +   GLDIP    V   D             +  IGR  R  N+   + + +   K
Sbjct: 478 VATAVASRGLDIPNVTHVINYD-----LPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNK 532

Query: 696 SIQLAIDE 703
            I   + E
Sbjct: 533 GIAKELIE 540


>gi|72074252|ref|XP_780035.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 1
           [Strongylocentrotus purpuratus]
 gi|115968722|ref|XP_001179006.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 2
           [Strongylocentrotus purpuratus]
          Length = 883

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 14/156 (8%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + +EI    ++  + L+   TKR  +DL   +         +H +    ER  ++ + R
Sbjct: 347 QLLEEIMQ--EKDNKTLVFCETKRRTDDLVRRMRRDGWPAMCLHGDKSQPERDWVLSEFR 404

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+  +LV  ++   GLD+ +   V   D     +  S    +  IGR AR+  +    Y
Sbjct: 405 DGRAPILVATDVASRGLDVTDIKFVINYD-----YPNSSEDYVHRIGRTARSTRTGTA-Y 458

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
                 +++ A D        Q     K  INP+ +
Sbjct: 459 TFFTRNNMKQAADLIN---VLQEA---KQVINPKLI 488


>gi|256083681|ref|XP_002578069.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238663419|emb|CAZ34307.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 944

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 78/229 (34%), Gaps = 28/229 (12%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGF-----RLPSCMDNRPLRFEEWNCLRPTTI 526
            V    V++ QI      +  R     + GF     R+       P         +  T+
Sbjct: 304 MVSRGKVSLEQIRFFVLDEADRM---LDMGFEPQIRRIVEQHGMPP-------AGKRQTL 353

Query: 527 VVSATPGSWELEQCQGIIVEQII-----RPTGLVDPPV-EIRSARTQVE-DVYDEINLAA 579
           + SAT    E++      +   I     R     +  + E+ +   + + D+   +    
Sbjct: 354 MFSAT-FPKEIQTLARDFLHSYIFLAVGRVGSTNENIIQEVLNVADKDKPDMLVRLLQGK 412

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
                 L+ V TKR A+ L ++L + N  V  +H +    ER   ++  R G+  +L+  
Sbjct: 413 DPDGLALVFVETKRGADVLAKFLCQLNFPVTSIHGDRPQTEREHALQSFRSGRTPILIAT 472

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            +   GLDIP    V   D             +  IGR  R        
Sbjct: 473 AVAARGLDIPNVKHVINFD-----LPSDIEEYVHRIGRTGRMGQPGSAT 516


>gi|149194843|ref|ZP_01871937.1| transcription-repair coupling factor [Caminibacter mediatlanticus
           TB-2]
 gi|149135002|gb|EDM23484.1| transcription-repair coupling factor [Caminibacter mediatlanticus
           TB-2]
          Length = 981

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 87/219 (39%), Gaps = 19/219 (8%)

Query: 186 AKVIEAMQR-PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           AKV E +Q     ++  N   A  +  E   +   NAV  F  +      +    R + +
Sbjct: 3   AKVYEYLQNNKTNIITSNLKEALNI-GEVYKYLDLNAVV-FPDFRAVLGDDLRSFRKEIF 60

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304
                 +N  + +             +   +S  S I     V+ Y + I  L  GDS++
Sbjct: 61  -----ELNNALFK---------FYNENAYFISPYSTIMKKLPVKKYYKSI-DLNFGDSID 105

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
            +E+  + +   Y+R DI   +G     GD ++I+P +      R+S+F  +IE I EF 
Sbjct: 106 LEEIKKTFILWGYERVDIVSEKGEVSFRGDILDIWPINT-KKPIRISLFDIEIESIREFD 164

Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
             T + I  +E+IKI      +  +       K  + E 
Sbjct: 165 ETTQKSIDEIESIKIIPAIAALDEKEYNEILEKIERSEY 203



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 71/199 (35%), Gaps = 19/199 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             + +SATP    L      I         P G  +    ++     +  + + I    +
Sbjct: 619 HMLYMSATPIPRTLNMALSQIKSISNLEEAPKGKQNTKTFVKEWNENL--IKEAILREIR 676

Query: 581 QGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +G +I          E    +L + L    I    +H+++   +  + + D    K+D+ 
Sbjct: 677 RGGQIFYIYNNIAYIEHKKKELLDILPNLRILT--LHAKMTPNQIEKGLVDFINKKYDLA 734

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +   ++  G+ IP    V + +ADK G       L Q  GR  R  +     +       
Sbjct: 735 LTTTIVESGIHIPNVNTVIVENADKFGI----ADLHQIRGRVGRGKHEGYAYFLVK---- 786

Query: 697 IQLAIDETTRRREKQLEHN 715
            +  + E  ++R   LE N
Sbjct: 787 NKEELSEDAKKRLLALEEN 805



 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 136 KDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT---FTMAKVIEAM 192
           + +  F  +  +  + DQ  AI +++    ++   +LL G  G GKT      + ++   
Sbjct: 460 EGVKDFIKKAPFTHTNDQLKAINEIINDFKTKIMDRLLTGDVGFGKTEVAMVASFIVANS 519

Query: 193 QRPAIVMAPNKILAAQLYSEFKNFFPH 219
                V+AP  IL  Q Y  FK  F  
Sbjct: 520 GYQVAVIAPTTILVNQHYESFKERFKD 546


>gi|67423408|dbj|BAD99523.1| VASA RNA helicase [Artemia franciscana]
          Length = 726

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 81/184 (44%), Gaps = 19/184 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E+++     +E  I  T          ++   +EI  A+++++ + + 
Sbjct: 492 NTLMFSAT-FPNEVQELAAEFLENYIFVTVGTVGGACMDVLQEVIEI-DAKSRIDRLLEI 549

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +    ++G++ L+   +K+ A+ L   L  +N+    +H +    +R E++RD + G  +
Sbjct: 550 LTE--KEGVKTLVFASSKKTADFLAALLSTKNLPATSIHGDRFQYQREEVLRDFKSGHRN 607

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTI 693
           +LV   +   GLDI   GLV   +             +  IGR  R  N+   I + +  
Sbjct: 608 ILVATAVAARGLDIKGVGLVINYE-----LPTDIDEYVHRIGRTGRLGNTGHAISFFNPD 662

Query: 694 TKSI 697
             S 
Sbjct: 663 KDSA 666


>gi|333030152|ref|ZP_08458213.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
 gi|332740749|gb|EGJ71231.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
          Length = 404

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 75/186 (40%), Gaps = 27/186 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       E+I++   +            Q  +
Sbjct: 182 QTIMFSATMPDKIQKLAQNILHNPEEIKLAVSKPAEKILQAAYVC--------YEGQKLN 233

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + +++  +  +  + L+   +K   +++   L + +++V  +HS++    R E++++ + 
Sbjct: 234 IINDL-FSKSKSEKSLVFASSKAKVKEVARALKKMDLKVGEIHSDLNQKTREEMLQNFKA 292

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G  D+LVG +++  G+D+ +  LV   D             +  IGR AR  N  V +  
Sbjct: 293 GNIDILVGTDIIARGIDVDDIRLVINYDV-----PNDSEDYVHRIGRTARANNDGVAITF 347

Query: 691 DTITKS 696
                 
Sbjct: 348 VNTKDQ 353


>gi|313624489|gb|EFR94491.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
           J1-023]
          Length = 516

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 98/256 (38%), Gaps = 16/256 (6%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P     E+         I+   +    +E    +   ++ +D ++    
Sbjct: 177 QTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLD 236

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV 
Sbjct: 237 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R       I +        
Sbjct: 297 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGY 351

Query: 698 QLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
              ++ETT++R + L+    ++      +   EKI E I    L D  T    +  +  +
Sbjct: 352 LRIVEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDA 411

Query: 755 LSKKKGKAHLKSLRKQ 770
                  A LK L K+
Sbjct: 412 TDIA--AAMLKMLAKE 425


>gi|315281538|ref|ZP_07870145.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
           S4-120]
 gi|307570401|emb|CAR83580.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
 gi|313609827|gb|EFR85263.1| dead-box ATP-dependent rna helicase ydbr [Listeria monocytogenes
           FSL F2-208]
 gi|313614811|gb|EFR88348.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
           S4-120]
          Length = 518

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 98/256 (38%), Gaps = 16/256 (6%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P     E+         I+   +    +E    +   ++ +D ++    
Sbjct: 179 QTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLD 238

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV 
Sbjct: 239 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 298

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R       I +        
Sbjct: 299 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGY 353

Query: 698 QLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
              ++ETT++R + L+    ++      +   EKI E I    L D  T    +  +  +
Sbjct: 354 LRIVEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDA 413

Query: 755 LSKKKGKAHLKSLRKQ 770
                  A LK L K+
Sbjct: 414 TDIA--AAMLKMLAKE 427


>gi|297797303|ref|XP_002866536.1| hypothetical protein ARALYDRAFT_496494 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312371|gb|EFH42795.1| hypothetical protein ARALYDRAFT_496494 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 588

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 71/185 (38%), Gaps = 15/185 (8%)

Query: 524 TTIVVSAT-PGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT P   E        +  + II    ++    ++  +EI     +   +   +
Sbjct: 342 QTLLWSATWPREVESLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLL 401

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G +IL+ V TKR  + +T  L         +H +    ER  ++ + + G+  +
Sbjct: 402 KQLMD-GSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQPERDRVLAEFKSGRSPI 460

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  +    I  IGR  R   +K + +      
Sbjct: 461 MTATDVAARGLDVKDIKCVVNYD-----FPNTLEDYIHRIGRTGRAG-AKGMAFTFFTHD 514

Query: 696 SIQLA 700
           + + A
Sbjct: 515 NAKFA 519


>gi|54302107|ref|YP_132100.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46915528|emb|CAG22300.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 623

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 8/147 (5%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           ++    +    +     ++ V T++  E L ++L  R  +   +H ++    R   +  +
Sbjct: 233 DEAMIRMLETEENIDASIVFVRTRQDTERLADWLSARGCKAAALHGDIPQSLRERTVDHI 292

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVI 687
           + G  DVLV  +++  GLDI     V   D   +       S I  IGR  R   S K I
Sbjct: 293 KRGVIDVLVATDVVARGLDIQRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRSGKAI 347

Query: 688 LYADTITKSIQLAIDETTRRR--EKQL 712
           L   T    +   I+  T+ R  E QL
Sbjct: 348 LLVRTNQIRMLRTIERVTKSRMEEIQL 374


>gi|46907098|ref|YP_013487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47092073|ref|ZP_00229866.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
           H7858]
 gi|254992756|ref|ZP_05274946.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-064]
 gi|255521719|ref|ZP_05388956.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-175]
 gi|258611720|ref|ZP_05241706.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
 gi|293596169|ref|ZP_05228867.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
 gi|293596832|ref|ZP_05264606.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
 gi|300764074|ref|ZP_07074069.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
 gi|46880365|gb|AAT03664.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47019513|gb|EAL10253.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
           H7858]
 gi|258605664|gb|EEW18272.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
 gi|293582796|gb|EFF94828.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
 gi|293593090|gb|EFG00851.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
 gi|300515064|gb|EFK42116.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
 gi|332311273|gb|EGJ24368.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A]
          Length = 519

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 98/256 (38%), Gaps = 16/256 (6%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P     E+         I+   +    +E    +   ++ +D ++    
Sbjct: 179 QTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLD 238

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV 
Sbjct: 239 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 298

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R       I +        
Sbjct: 299 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGY 353

Query: 698 QLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
              ++ETT++R + L+    ++      +   EKI E I    L D  T    +  +  +
Sbjct: 354 LRIVEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDA 413

Query: 755 LSKKKGKAHLKSLRKQ 770
                  A LK L K+
Sbjct: 414 TDIA--AAMLKMLAKE 427


>gi|323345624|ref|ZP_08085847.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
 gi|323093738|gb|EFZ36316.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
          Length = 548

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 98/246 (39%), Gaps = 32/246 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSA-----RTQVEDVYDEINL 577
            TI+ SAT    ++E+    +++  +     V  P E IR +      TQ  D+   I  
Sbjct: 183 QTIMFSAT-MPDKIEELANTLLKNPVTIKLAVSKPAEKIRQSAYVCYETQKMDIIKNIFN 241

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A     R+++   +K+  + +T+ L ++N+    MHS+++  +R +++   + G+ DV+V
Sbjct: 242 AGDLK-RVIIFSGSKQKVKQITKALQQKNVNCGEMHSDLEQAQRDDMMFKFKSGQLDVIV 300

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             +++  G+DI +  +V   D             +  IGR AR     V +         
Sbjct: 301 ATDIISRGIDIDDIAMVINYDV-----PHDAEDYVHRIGRTARADRDGVAITL------- 348

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
              I+E      +Q+E         + + + + +   P  L            Q+   S 
Sbjct: 349 ---INEDDIYYFQQIE---------KFLGKPVEKTALPEGLGKGPEYKSHGKPQRGGRSA 396

Query: 758 KKGKAH 763
           K  +  
Sbjct: 397 KAIRRK 402


>gi|50420221|ref|XP_458643.1| DEHA2D04048p [Debaryomyces hansenii CBS767]
 gi|74602737|sp|Q6BT27|FAL1_DEBHA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49654310|emb|CAG86782.1| DEHA2D04048p [Debaryomyces hansenii]
          Length = 399

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 80/201 (39%), Gaps = 22/201 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVE----------DVY 572
             +VVSAT     LE       + +       D  +E I+    Q E          D+Y
Sbjct: 201 QVVVVSATLSREVLEVTGKFTTDPVKILVKRDDITLEGIKQYHIQCEKEDWKFDTLCDLY 260

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TK     LT+ + + N  V  MH ++K  ER  I+ D R G 
Sbjct: 261 DSLTIT-----QAVIFCNTKVKVNWLTDQMKKANFTVVAMHGDMKQDERDSIMNDFRTGN 315

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             VL+  ++   G+D+ +  LV   D         K + +  IGR+ R     V +   T
Sbjct: 316 SRVLISTDVWARGIDVQQVSLVINYD-----LPTDKENYVHRIGRSGRFGRKGVAINLVT 370

Query: 693 ITKSIQLA-IDETTRRREKQL 712
                +L  I+   R R K++
Sbjct: 371 KEDVDELRDIERFYRIRIKEM 391


>gi|50555013|ref|XP_504915.1| YALI0F02695p [Yarrowia lipolytica]
 gi|74632960|sp|Q6C347|FAL1_YARLI RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49650785|emb|CAG77720.1| YALI0F02695p [Yarrowia lipolytica]
          Length = 397

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 80/194 (41%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     LE     + + +        +   GL    + +     + +   D
Sbjct: 197 ATQVVVVSATLPHSVLEMTSKFMTDPVRILVKRDELTLEGLKQYFIAVEQEEWKFDTLCD 256

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TK+  + LT+ + + N  V  MH ++   +R  I+ + R 
Sbjct: 257 LYDTLTIT-----QAVIFCNTKKKVDWLTQQMKDNNFTVCSMHGDMAQKDRDSIMNEFRS 311

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+  VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V I +
Sbjct: 312 GRSRVLISTDVWARGIDVQQVSLVINYD-----LPPNRENYIHRIGRSGRFGRKGVAINF 366

Query: 690 ADTITKSIQLAIDE 703
           A     +    I++
Sbjct: 367 ATNDDITTLRDIEQ 380


>gi|296271676|ref|YP_003654307.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296095851|gb|ADG91801.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 488

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 25/248 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDV-YDEINLAA-- 579
            T++ SAT      +  Q I+ E + I  T       +I      V++   D+  +    
Sbjct: 173 QTLLFSATMPPAIKKLAQNILKEPEFITVTKAEMTNSKITQLFYVVDEYERDDALIRLFD 232

Query: 580 -QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +   + ++   TK+  + L+ YL  +    + +H +++  +R E+IR  + G  DVL+ 
Sbjct: 233 FKNPEKSIIFCRTKKEVDRLSTYLVSQGHMAKGLHGDMEQRQREEVIRSFKKGALDVLIA 292

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V               S +  IGR  R     V +   T  +   
Sbjct: 293 TDVAARGLDVNDVSHVFNYH-----LPFDSESYVHRIGRTGRAGKEGVAISIVTPHE--- 344

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                    R  Q    K  ++    ++ K++  ID +  +  +T    I  Q++  S  
Sbjct: 345 --------FRMIQ----KIQHVTGGKMEAKVIPNIDSVKEKKTSTLRGKISEQKVYDSGI 392

Query: 759 KGKAHLKS 766
                LK 
Sbjct: 393 SLVESLKE 400


>gi|332218192|ref|XP_003258243.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Nomascus leucogenys]
          Length = 783

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVY- 572
           P T++ SAT   W         +     V+ I + T      VE   I+   TQ   V  
Sbjct: 369 PQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIG 428

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++         + +H ++   +R   ++  R G 
Sbjct: 429 DVIRVYSGHQGRTIIFCETKKEAQELSQ-NSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 488 FGVLVATNVAARGLDIPEVDLVIQSSPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 542

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QL           Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 543 HKEEYQL----------VQVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 590

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 591 ISHFKQSAEKLIEE 604


>gi|325280173|ref|YP_004252715.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324311982|gb|ADY32535.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 417

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 79/188 (42%), Gaps = 12/188 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVE--QIIRPTGLVDPPVEIRSA---RTQVEDVYDEIN 576
           +  TI+ SAT      +  + I+ +  +I       +  +   +     TQ   +  E+ 
Sbjct: 180 KRQTILFSATLPPKIRQLAKQILKDPAEINIAISKPNEAIIQSAYICYETQKMAIIQELF 239

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               +  + ++   +K+  +DL   L    + V  MHS+++  +R  ++ D + GK D+L
Sbjct: 240 SKPNRK-KTIIFSSSKQKVKDLAYSLKRMKLNVAAMHSDLEQEQREAVMLDFKNGKTDIL 298

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITK 695
           V  +++  G+DI + GLV   D             I  IGR AR N +   I +     +
Sbjct: 299 VATDIVARGIDIDDIGLVINYDV-----PHDPEDYIHRIGRTARANADGVAITFVCEPEQ 353

Query: 696 SIQLAIDE 703
                I+E
Sbjct: 354 GKFHKIEE 361


>gi|301601272|dbj|BAJ12168.1| DEAD box protein [Rana rugosa]
          Length = 736

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 9/149 (6%)

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           + +    +E+     + + + + + +      R ++ V TK+ A+ +  +L +  +    
Sbjct: 523 SDVQQEVIEVEEF-GKKDKLMEILQVIGS--ERTMVFVKTKKKADFIATFLCQEKVPSTS 579

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +H + +  ER   +RD R G+  V+V  ++   GLDI     V   D             
Sbjct: 580 IHGDREQRERETALRDFRTGQCPVIVATSVAARGLDIENVSHVINFD-----IPDDIDEY 634

Query: 672 IQTIGRAARNVNSK-VILYADTITKSIQL 699
           +  IGR  R  N+   I + D      Q 
Sbjct: 635 VHRIGRTGRCGNTGRAISFFDKRGDDEQR 663


>gi|224090572|ref|XP_002187022.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Taeniopygia
           guttata]
          Length = 492

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 16/186 (8%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIR--------PTGLVDPPVEIRSARTQVED 570
              +  T++ SAT            +    I             V   +   S   + + 
Sbjct: 250 QKEKRQTLMFSATFPEEVQRLAYEFLKTDFIFVVVGCAGGACSDVQQNILQVSQYFKRDK 309

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + + ++       R L+ V TK+ A+ +  +L + NI    +H + +  ER   + D R 
Sbjct: 310 LIEILHSTG--NERTLVFVDTKKKADFIACFLCQENIPATSIHGDREQREREIALGDFRS 367

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILY 689
           G+  VLV  ++   GLDI     V   D        +    +  IGR  R  N+ K + +
Sbjct: 368 GRRPVLVATSVAARGLDIENVQHVINFD-----LPSTIEEYVHRIGRTGRCGNTGKAVAF 422

Query: 690 ADTITK 695
            D  + 
Sbjct: 423 FDKYSD 428


>gi|118574850|gb|ABL07003.1| DH [Medicago sativa]
          Length = 406

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
              ++SAT     LE     + + +        +   G+    V +     + +   D+Y
Sbjct: 208 QVCLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R+G 
Sbjct: 268 DTLTIT-----QAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQRERDAIMSEFRVGT 322

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I +  
Sbjct: 323 TRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVK 377

Query: 692 TITKSIQLAIDE 703
           +    I   I++
Sbjct: 378 SDDIKILRDIEQ 389


>gi|18859541|ref|NP_571132.1| probable ATP-dependent RNA helicase DDX4 [Danio rerio]
 gi|2463519|dbj|BAA22535.1| vas [Danio rerio]
          Length = 716

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 11/168 (6%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDV--YDEINL-- 577
            T++ SAT P   +      + V+ I    G+V     ++     QV+     D++    
Sbjct: 465 QTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTVVQVDQYSKRDQLLELL 524

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            A    R ++ V TKR A+ +  +L +  I    +H + +  ER + + D RLG   VLV
Sbjct: 525 RATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGHCPVLV 584

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             ++   GLDI +   V   D        S    +  IGR  R  N+ 
Sbjct: 585 ATSVAARGLDIEQVQHVVNFD-----MPSSIDEYVHRIGRTGRCGNTG 627


>gi|10177293|dbj|BAB10554.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
          Length = 564

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 71/185 (38%), Gaps = 15/185 (8%)

Query: 524 TTIVVSAT-PGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT P   E        +  + II    ++    ++  +EI     +   +   +
Sbjct: 318 QTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLL 377

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G +IL+ V TKR  + +T  L         +H +    ER  ++ + + G+  +
Sbjct: 378 KQLMD-GSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPI 436

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  +    I  IGR  R   +K + +      
Sbjct: 437 MTATDVAARGLDVKDIKCVVNYD-----FPNTLEDYIHRIGRTGRAG-AKGMAFTFFTHD 490

Query: 696 SIQLA 700
           + + A
Sbjct: 491 NAKFA 495


>gi|225441549|ref|XP_002281113.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 622

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 63/189 (33%), Gaps = 19/189 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYD 573
              T++ SAT    E+++     +   I          T L+   VE      +   + D
Sbjct: 350 VRQTMLFSAT-FPKEIQRLASDFLSSYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMD 408

Query: 574 EINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            ++     G        L+ V TK+ A+ L  +L         +H +    ER   +R  
Sbjct: 409 LLHAQRANGAHGKQSLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREHALRSF 468

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G   +LV  ++   GLDIP    V   D             +  IGR  R   + +  
Sbjct: 469 KSGNTPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKTGLAT 523

Query: 689 YADTITKSI 697
                  S 
Sbjct: 524 AFFNENNSS 532


>gi|223056226|gb|ACM80365.1| vasa [Asterias forbesi]
          Length = 715

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 64/183 (34%), Gaps = 11/183 (6%)

Query: 524 TTIVVSATPGSWELEQC----QGIIVEQIIRPTGLVDPPVEIRSARTQV--EDVYDEINL 577
             ++ SAT  +   E+     Q  +   + R  G      +      Q   +D    +  
Sbjct: 449 QCLMFSATFPNEVXEKAAEYLQDYLFLTVGRVGGAASDITQSVLEVGQYGKKDQLLALLQ 508

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A     R L+ V TKR A+     L +       +H + +  ER E + D R G+  VLV
Sbjct: 509 AQDATDRTLVFVETKRSADFXASVLSQSEFPTTSIHGDREQREREEALADFRSGRAPVLV 568

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDIP    V   D             +  IGR  R  N          +K  
Sbjct: 569 ATSVAARGLDIPNVKHVVNYD-----LPSGIDEYVHRIGRTGRVGNLGKATSFYDPSKDS 623

Query: 698 QLA 700
           Q A
Sbjct: 624 QSA 626


>gi|324517616|gb|ADY46875.1| Eukaryotic initiation factor 4A-III [Ascaris suum]
          Length = 405

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             +++SAT     LE     +   I        +   G+    V +     + +   D+Y
Sbjct: 207 QVVLLSATLPHEILEMTSKFMTNPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLCDLY 266

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   T+R  + L E L E N  V  MH +++  ER  I+++ R G 
Sbjct: 267 DTLTIT-----QAVIFCNTRRKVDWLAEKLKEANFTVSAMHGDMEQKERDAIVKEFRSGT 321

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             +L+  ++   GLDIP+  LV   D        ++   I  IGR+ R     V I +  
Sbjct: 322 SRLLISTDVFARGLDIPQVSLVVNYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVK 376

Query: 692 TITKSIQLAIDE 703
           +    I   I++
Sbjct: 377 SDDIRILRDIEQ 388


>gi|325183171|emb|CCA17628.1| putative RNA helicase [Albugo laibachii Nc14]
          Length = 1157

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 14/180 (7%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
             T++ SAT     +      + + I        +     ++  VE+     +   +   +
Sbjct: 933  QTLMWSATWPKEIVSLAHDFLTDYIQVTVGSLELTANKKIEQIVEVMDDHQKYNALVAHL 992

Query: 576  NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             +    G RI+L   TKR A++L+  L       + +H      ER  +++D + GK  +
Sbjct: 993  RVIYDGG-RIILFCETKRGADELSRNLRNSRYICKAIHGNKSQEERDYVLKDFKQGKTQI 1051

Query: 636  LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            LV  ++   GLDI +   V   D  K     +    I  IGR AR  +    +   T   
Sbjct: 1052 LVATDVASRGLDIKDIRYVINFDMPK-----NVEDYIHRIGRTARAGSKGTAISFFTSDN 1106


>gi|302665308|ref|XP_003024266.1| hypothetical protein TRV_01617 [Trichophyton verrucosum HKI 0517]
 gi|291188313|gb|EFE43655.1| hypothetical protein TRV_01617 [Trichophyton verrucosum HKI 0517]
          Length = 1171

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 87/252 (34%), Gaps = 28/252 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     +E I+    +V P +    E+R+   +   + + + 
Sbjct: 721 QTVLFSATFPRNMEALARKTLSKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLELLG 780

Query: 577 LAAQQGL----RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 781 NLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKAGI 840

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F +LV  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 841 FPILVATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 893

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K      P+ +++ +   +D +       +      
Sbjct: 894 --------LTEDQERYSVDISKALKQSGQPVPEPIQKMVNAFLDKVKEGKEKASGSGFGG 945

Query: 751 QQLSLSKKKGKA 762
           + L    ++  A
Sbjct: 946 KGLERLDQERDA 957


>gi|299822345|ref|ZP_07054231.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
 gi|299815874|gb|EFI83112.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
          Length = 512

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 94/253 (37%), Gaps = 15/253 (5%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P     E+         I+   +    +E    +   ++ +D ++    
Sbjct: 179 QTLLFSATMPDPIRRIAERFMHSPELVRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLD 238

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV 
Sbjct: 239 VQAPELAIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 298

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R       I +        
Sbjct: 299 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGY 353

Query: 698 QLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
              ++ETT++R + L+    ++      +  +EKI E I    L D A     +  +  +
Sbjct: 354 LRIVEETTKKRMEPLKPPTWDEAFAGQLRVAQEKIEEAITQENLADYAVFAGQLLEKYDA 413

Query: 755 LS-KKKGKAHLKS 766
                     +  
Sbjct: 414 TDIAAAMLKMIAK 426


>gi|221640283|ref|YP_002526545.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides KD131]
 gi|332559285|ref|ZP_08413607.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           WS8N]
 gi|221161064|gb|ACM02044.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           KD131]
 gi|332276997|gb|EGJ22312.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           WS8N]
          Length = 453

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 80/239 (33%), Gaps = 31/239 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L + +  ++++     ++ + +              + + GF       +   +  
Sbjct: 132 TPGRLIDLLDRNAVVLDHTGYLVLDEAD-----------QMLDMGFI------HSLRKIA 174

Query: 517 EWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQI-----IRPTGLVDPPVEIRSARTQVE 569
            +  L+  T++ SAT      EL         ++      +P   +   V       + +
Sbjct: 175 RFLPLKRQTLLFSATMPKLIEELAHTYLREPVKVQVAPPGKPVEKIAQGVHFTPQGDKAK 234

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   +      G + L+   TK  +E L + L     +   +H      +R   + + R
Sbjct: 235 LLESYLQ--KHPGEQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFR 292

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G  DVLV  ++   G+DIP    V   D           + +  IGR AR       +
Sbjct: 293 DGSLDVLVATDVAARGIDIPGVRHVYNYDMPNV-----PENYVHRIGRTARAGAEGSAV 346


>gi|50659095|ref|NP_004719.2| nucleolar RNA helicase 2 [Homo sapiens]
 gi|76803555|sp|Q9NR30|DDX21_HUMAN RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
           protein 21; AltName: Full=Gu-alpha; AltName:
           Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
           RNA helicase II; AltName: Full=RH II/Gu
 gi|31455230|gb|AAH08071.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens]
 gi|55664208|emb|CAH72377.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens]
 gi|119574691|gb|EAW54306.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Homo
           sapiens]
 gi|261858100|dbj|BAI45572.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
          Length = 783

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVY- 572
           P T++ SAT   W         +     V+ I + T      VE   I+   TQ   V  
Sbjct: 369 PQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIG 428

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++         + +H ++   +R   ++  R G 
Sbjct: 429 DVIRVYSGHQGRTIIFCETKKEAQELSQ-NSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 488 FGVLVATNVAARGLDIPEVDLVIQSSPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 542

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QL           Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 543 HKEEYQL----------VQVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 590

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 591 ISHFKQSAEKLIEE 604


>gi|108803751|ref|YP_643688.1| transcription-repair coupling factor [Rubrobacter xylanophilus DSM
           9941]
 gi|108764994|gb|ABG03876.1| transcription-repair coupling factor [Rubrobacter xylanophilus DSM
           9941]
          Length = 1054

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 79/202 (39%), Gaps = 27/202 (13%)

Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           A +    +RP ++++  +  AA+   +   F     V           P   VP  D + 
Sbjct: 19  AYLAARNERPVLLLSSTEEDAARYARDAACFTDEPVVHL---------PSRGVPYGDVF- 68

Query: 246 EKESSINEQIDRMRHSA-TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI--GDS 302
                     +  R  A  R+L   +   VV++     G  ++   + +   L++  G  
Sbjct: 69  --------DPEVWRVGARQRALHALDSARVVAA-----GPLALMERTPLHEPLRLAGGVE 115

Query: 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE 362
           ++  E+L  L    Y+R +     G F V G  +++FPS       RV  +G+++E +  
Sbjct: 116 LDMDEVLLRLAALGYERVERVFRPGEFAVRGGILDLFPSTR-RSPVRVEWWGDEVESVRA 174

Query: 363 FYPLTGQKIRNVETIKIYANSH 384
               T + ++ +  + +YA   
Sbjct: 175 VSLATRRAVKELAAVTVYAARE 196



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 69/197 (35%), Gaps = 16/197 (8%)

Query: 525 TIVVSATPGSWELEQ--CQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    ++        +  I   P G       +       E V   I     +
Sbjct: 669 VLTLTATPIPRTMQMGLSGLRDISVIETPPAGRRSVLTHVGPYDE--ELVRRAIEREVAR 726

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E+  + L E    VR+   H ++      E+++    G+ DVLV  
Sbjct: 727 GGQVFFVHNRVETIEEAAQRLRELVPGVRFAVAHGQMPERALEEVMQRFLEGEADVLVTT 786

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  GLDI     + +  AD  G  +    L Q  GR  R+           +  ++  
Sbjct: 787 TIVESGLDIATANTLIVERADAMGLAQ----LYQLRGRIGRSTEQAYAYLFAPLGATL-- 840

Query: 700 AIDETTRRREKQLEHNK 716
              E  RR E  L+  +
Sbjct: 841 ---EAQRRLEALLDFTE 854


>gi|307191879|gb|EFN75298.1| Probable ATP-dependent RNA helicase DDX5 [Harpegnathos saltator]
          Length = 627

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 12/144 (8%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++  + ++ V TKR  +D+T  +     +   +H +    ER  ++++ R G+  +LV  
Sbjct: 370 EKENKTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQERDHVLQEFRSGRAPILVAT 429

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   GLD+ +   V   D     +  S    I  IGR  R   +    YA   + +++ 
Sbjct: 430 DVAARGLDVDDVKYVINFD-----YPSSSEDYIHRIGRTGRRRQTGTA-YAFFTSHNMKH 483

Query: 700 AIDETTRRREKQLEHNKKHNINPQ 723
           A D        ++      N+NP+
Sbjct: 484 AGD------LIEVLREAGQNVNPR 501


>gi|300173740|ref|YP_003772906.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299888119|emb|CBL92087.1| ATP-dependent RNA helicase/Autoaggregation-mediating protein
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 538

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 90/258 (34%), Gaps = 17/258 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +        E I I    L    V+   +R    +  D    I  
Sbjct: 176 QTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIFD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                L  ++   TKR  E+L   L  R      +H ++    R  ++   +  + ++LV
Sbjct: 236 VQAPKL-AIVFGRTKRRVEELARGLEARGYHASGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS 696
             ++   GLD+ +   V   D       +   S +  IGR  R     V + +       
Sbjct: 295 ATDVAARGLDVKDVSHVYNFD-----IPQDPESYVHRIGRTGRAGAKGVSVTFVSPNEMD 349

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
              A+++ T++R   LE     +     +K    EV   +   +A      +D      S
Sbjct: 350 YLRAVEDLTKKRMTALEPASLQDARVGKIKNAAGEVSKIVDAANAKEIQSEVDKLTAQYS 409

Query: 757 KKKGKAHL----KSLRKQ 770
            ++  A L      L KQ
Sbjct: 410 SEQLAAALLSSVADLEKQ 427


>gi|269217166|ref|ZP_06161020.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
           700122]
 gi|269129303|gb|EEZ60388.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
           700122]
          Length = 721

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 35/201 (17%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ-- 581
            T++ SAT     +++ Q  ++  +++     DP +   + R  V D+ D+  +   +  
Sbjct: 201 QTLLFSAT-----IDRSQDKVMFSLLK-----DPEIIEIAHRGDVADLIDQYVIKTDRRL 250

Query: 582 -------------GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
                        G R+++   TK  A++ T+ L +  I    +H++    +R   + + 
Sbjct: 251 KPALLNSFVRERGGFRVIVFTRTKGGADNCTKRLRKIGIATEAIHADRSQAQRARALDNF 310

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R GK  VLV  ++L  G+D+PE   V   D             +  IGR  R       +
Sbjct: 311 REGKTHVLVATDVLSRGIDVPEVDYVINYDLPMM-----PEDYVHRIGRTGRAGARGYAV 365

Query: 689 YADTIT-----KSIQLAIDET 704
              T       KSIQ  ID+T
Sbjct: 366 SFVTPDTRNLLKSIQKFIDQT 386


>gi|297569193|ref|YP_003690537.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925108|gb|ADH85918.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 528

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 82/233 (35%), Gaps = 16/233 (6%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPT 552
            L + GF      D R +  +     +  T+  SAT  S           + +   I P 
Sbjct: 261 RLLDMGFI----PDVRRIIQQTPEKSQRQTLFFSATLNSQIANLSAQWTKDPVTVEIEPE 316

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAA--QQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
            +    VE R      ++    +      +Q  R+++    + +   + E LY   I   
Sbjct: 317 QVASDRVEQRVYMVTAKEKMTVLYNLITGKQLERVIVFCNRRDVTRRVRERLYRHGISCA 376

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +  EV   +R++ + + + GK  VLV  ++   GL I     V   +            
Sbjct: 377 MLSGEVSQQQRMKTLDNFKEGKIRVLVATDVAGRGLHIEGISHVINYN-----LPEDAED 431

Query: 671 LIQTIGRAARNVNSKV-ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
            +  IGR  R   S + + +AD        AI+E    R+    + +   + P
Sbjct: 432 YVHRIGRTGRAGASGISVSFADEEESFYLPAIEE-YMGRKLDCVYPEDELLIP 483


>gi|19309904|emb|CAC84069.1| vasa-like protein [Danio rerio]
          Length = 715

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 11/168 (6%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDV--YDEINL-- 577
            T++ SAT P   +      + V+ I    G+V     ++     QV+     D++    
Sbjct: 464 QTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQYSKRDQLLELL 523

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            A    R ++ V TKR A+ +  +L +  I    +H + +  ER + + D RLG   VLV
Sbjct: 524 RATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGHCPVLV 583

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             ++   GLDI +   V   D        S    +  IGR  R  N+ 
Sbjct: 584 ATSVAARGLDIEQVQHVVNFD-----MPSSIDEYVHRIGRTGRCGNTG 626


>gi|326502382|dbj|BAJ95254.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 412

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             +++SAT     LE     + + +        +   G+    V +     + +   D+Y
Sbjct: 214 QVVLISATLPHDILEITSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLY 273

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R G 
Sbjct: 274 DTLTIT-----QAVIFCNTKRKVDWLTERMRTNNFTVSAMHGDMPQKERDAIMNEFRGGT 328

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I +  
Sbjct: 329 TRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVR 383

Query: 692 TITKSIQLAIDE 703
                I   I++
Sbjct: 384 KDDIRILRDIEQ 395


>gi|242008404|ref|XP_002424996.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212508625|gb|EEB12258.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 684

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 10/142 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+ +            L+ V T++ A+ L EYL+ +   V  +H E    ER + +R  R
Sbjct: 452 DLLNATRYKNGTESLTLVFVETRKGADCLEEYLHYQGYPVSCIHGERSQREREDALRRFR 511

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+  +LV   +   GLDI     V   D             +  IGR  R  N  V   
Sbjct: 512 SGETPILVATAVAARGLDISHVTHVINFD-----LPSDIEEYVHRIGRTGRMGNLGVATS 566

Query: 690 AD-----TITKSIQLAIDETTR 706
                   I + +   + ET +
Sbjct: 567 FFNEKNRNIVRDLVELLTETNQ 588


>gi|116051990|ref|YP_789167.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587211|gb|ABJ13226.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 449

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 99/284 (34%), Gaps = 46/284 (16%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +           ++ V   Q+  +   +  R     + GF      +   L   
Sbjct: 131 TPGRLLD--------LYRQNAVKFAQLQALVLDEADRM---LDLGF----ARELDELFAA 175

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
                +  T++ SAT             +  + R        +E+    T  + V   + 
Sbjct: 176 L--PRKRQTLLFSAT---------FSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLV 224

Query: 577 LAAQQG--------------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
              ++                + L+   T++  E+L   L  + I    +H +     R+
Sbjct: 225 PVDKKRKAELFCHLLQANRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARL 284

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             ++  + G+ D+LV  ++   GLDI E  LV   D             I   GRA  + 
Sbjct: 285 RALQRFKAGEVDLLVATDVAARGLDIEEMPLVVNFDLPIV--AEDYVHRIGRTGRAGASG 342

Query: 683 NSKVILYADTIT--KSIQLAIDETTRRREKQLEHNKKHNINPQS 724
            +  ++ AD +    +I+  I +T +RRE + +   +H   PQ+
Sbjct: 343 QAVSLVCADEVELLAAIETLIGQTLQRRE-EPDFAPEHR-VPQT 384


>gi|212534920|ref|XP_002147616.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|212534922|ref|XP_002147617.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|242791505|ref|XP_002481771.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|210070015|gb|EEA24105.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|210070016|gb|EEA24106.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|218718359|gb|EED17779.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 399

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 22/193 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 198 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCD 257

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 258 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 312

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V I +
Sbjct: 313 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 367

Query: 690 ADTITKSIQLAID 702
             +    I   I+
Sbjct: 368 VTSDDVRILRDIE 380


>gi|317125686|ref|YP_004099798.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
 gi|315589774|gb|ADU49071.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
           43043]
          Length = 562

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 90/242 (37%), Gaps = 36/242 (14%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGL 554
            + + GF LP       L           T++ SAT PG+      + +     IR  G 
Sbjct: 178 EMLDLGF-LPDVETLMSLTPAS-----RQTMLFSATMPGAIVTLARRYMTQPTHIRAMGD 231

Query: 555 VDPP------VEIRSARTQVEDVYDEINLAAQQGLR--ILLTVLTKRMAEDLTEYLYERN 606
            +        VE    R    D  + ++   Q   R   ++   TKR A  + + L ER 
Sbjct: 232 ENENAHTVKAVEQFVYRAHALDKVEMLSRMLQAKDRGLTIIFSRTKRTAAKVADELGERG 291

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
                +H ++    R + +R  R GK DVLV  ++   G+D+     V            
Sbjct: 292 FAAAAIHGDLGQGAREQALRAFRNGKVDVLVATDVAARGIDVDNVTHVINFQC-----PE 346

Query: 667 SKTSLIQTIGRAARNVNSKV-ILYADT--------ITKSIQLAIDETTRRREKQLEH-NK 716
            + + +  IGR AR  N+ V + + D         I K++ L I E       Q  + N 
Sbjct: 347 DEKTYLHRIGRTARAGNTGVAVTFVDWDDLHRWALINKTLDLGIPEP------QETYSNS 400

Query: 717 KH 718
           +H
Sbjct: 401 EH 402


>gi|226223484|ref|YP_002757591.1| ATP-dependent RNA helicase [Listeria monocytogenes Clip81459]
 gi|225875946|emb|CAS04650.1| Putative ATP-dependent RNA helicase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328467139|gb|EGF38229.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 1816]
 gi|328475471|gb|EGF46234.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 220]
          Length = 517

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 98/256 (38%), Gaps = 16/256 (6%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P     E+         I+   +    +E    +   ++ +D ++    
Sbjct: 177 QTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLD 236

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV 
Sbjct: 237 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R       I +        
Sbjct: 297 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGY 351

Query: 698 QLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
              ++ETT++R + L+    ++      +   EKI E I    L D  T    +  +  +
Sbjct: 352 LRIVEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDA 411

Query: 755 LSKKKGKAHLKSLRKQ 770
                  A LK L K+
Sbjct: 412 TDIA--AAMLKMLAKE 425


>gi|154342919|ref|XP_001567405.1| ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134064737|emb|CAM42842.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 604

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 12/171 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVEDVYDEINLA 578
            T++ SAT      +  +  +        G V    E     +R     ++     + + 
Sbjct: 316 QTLLYSATFPKEIQQMAREFLYRHYFLQVGRVGSTTENITQDVRWVED-MDKRGCLLEVL 374

Query: 579 AQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            + QG R+L+ V  KR A+ L  YL +  I    +H +    ER E +   + G   VLV
Sbjct: 375 KEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCRVLV 434

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             ++   GLDIP   +V   D        +    +  IGR  R       +
Sbjct: 435 ATDVASRGLDIPNVAVVVQYD-----LPSNIDDYVHRIGRTGRAGKRGTAI 480


>gi|16799933|ref|NP_470201.1| hypothetical protein lin0859 [Listeria innocua Clip11262]
 gi|217965039|ref|YP_002350717.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Listeria monocytogenes HCC23]
 gi|290892943|ref|ZP_06555933.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
 gi|16413310|emb|CAC96091.1| lin0859 [Listeria innocua Clip11262]
 gi|217334309|gb|ACK40103.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Listeria monocytogenes HCC23]
 gi|290557519|gb|EFD91043.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
          Length = 516

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 98/256 (38%), Gaps = 16/256 (6%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P     E+         I+   +    +E    +   ++ +D ++    
Sbjct: 177 QTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLD 236

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV 
Sbjct: 237 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R       I +        
Sbjct: 297 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGY 351

Query: 698 QLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
              ++ETT++R + L+    ++      +   EKI E I    L D  T    +  +  +
Sbjct: 352 LRIVEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDA 411

Query: 755 LSKKKGKAHLKSLRKQ 770
                  A LK L K+
Sbjct: 412 TDIA--AAMLKMLAKE 425


>gi|47094873|ref|ZP_00232487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a
           F6854]
 gi|284801196|ref|YP_003413061.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578]
 gi|284994338|ref|YP_003416106.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923]
 gi|47016755|gb|EAL07674.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a
           F6854]
 gi|284056758|gb|ADB67699.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578]
 gi|284059805|gb|ADB70744.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923]
          Length = 522

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 98/256 (38%), Gaps = 16/256 (6%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P     E+         I+   +    +E    +   ++ +D ++    
Sbjct: 179 QTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLD 238

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV 
Sbjct: 239 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 298

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R       I +        
Sbjct: 299 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGY 353

Query: 698 QLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
              ++ETT++R + L+    ++      +   EKI E I    L D  T    +  +  +
Sbjct: 354 LRIVEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDA 413

Query: 755 LSKKKGKAHLKSLRKQ 770
                  A LK L K+
Sbjct: 414 TDIA--AAMLKMLAKE 427


>gi|13470594|ref|NP_102163.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
 gi|14021336|dbj|BAB47949.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
          Length = 467

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 81/250 (32%), Gaps = 38/250 (15%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            V E  + +     +   +  R     + GF       N   R  +       T + SAT
Sbjct: 147 LVREGDLILSDTKWLVLDEGDRM---LDMGFI------NDVKRIAKATAPDRQTALFSAT 197

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR------- 584
                 E  +G++   +          +E+    T   ++   +  A  +  R       
Sbjct: 198 MPDEIAELAKGLLKNPV---------RIEVSPQSTAAAEIVQGVVFARTKQKRQVLSTML 248

Query: 585 -------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                  +++   TK  A+ +T+ L     +   +H       R + + D R G   +LV
Sbjct: 249 ADEAMKSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFREGSVRILV 308

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
             ++   G+D+P    V   D   E       S +  IGR  RN  +   I   D    S
Sbjct: 309 ATDIAARGIDVPGISHVVNFDLPDE-----AESYVHRIGRTGRNGMDGIAITLCDPSENS 363

Query: 697 IQLAIDETTR 706
               ++   R
Sbjct: 364 KLRQVERIIR 373


>gi|237836123|ref|XP_002367359.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii
           ME49]
 gi|14595111|emb|CAC43441.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii]
 gi|211965023|gb|EEB00219.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii
           ME49]
 gi|221484990|gb|EEE23280.1| conserved hypothetical protein [Toxoplasma gondii GT1]
 gi|221505957|gb|EEE31592.1| eukaryotic translation initiation factor 4A, putative [Toxoplasma
           gondii VEG]
          Length = 412

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 19/209 (9%)

Query: 515 FEEWNCLRP--TTIVVSATPGSWELEQCQGII---VEQIIRPT-----GLVDPPVEIRSA 564
           ++ +  L P     + SAT     LE     +      +++       G+    V +   
Sbjct: 203 YDVFKKLPPDVQVALFSATMPQDILELTTKFMRDPKRILVKNDELTLEGIRQFYVAVEKE 262

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D          + ++   T+R  + LT  + ER+  V  MH ++    R  I
Sbjct: 263 DWKLETLCDLYETLTIT--QAIIYCNTRRKVDFLTSKMSERDFTVSSMHGDMDQKSREMI 320

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D        +K + I  IGR+ R    
Sbjct: 321 MREFRSGSTRVLITTDLLARGIDVQQVSLVINYD-----LPATKENYIHRIGRSGRFGRK 375

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLE 713
            V +   T +      + E  +    Q+E
Sbjct: 376 GVAINFVTSSDV--EQLKEIEKHYNTQIE 402


>gi|303228490|ref|ZP_07315321.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516848|gb|EFL58759.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 523

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 9/191 (4%)

Query: 523 PTTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEI--NL 577
             T++ SAT      EL +        I ++PT +    +E      Q    +D +    
Sbjct: 177 HQTLLFSATMPKAIRELAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLF 236

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  +++TE L +R      +H ++   +R  +IR  R G  D+LV
Sbjct: 237 DLQAPELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILV 296

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D  ++    S T  +   GRA +   +    +        
Sbjct: 297 ATDVAARGLDISGVSHVYNYDLPQD--PESYTHRVGRTGRAGKAGEAY--TFVIPREIEH 352

Query: 698 QLAIDETTRRR 708
             AI+  T+R+
Sbjct: 353 LHAIERLTKRK 363


>gi|184200206|ref|YP_001854413.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
           DC2201]
 gi|183580436|dbj|BAG28907.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
           DC2201]
          Length = 719

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 6/129 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E++ + L  R      ++ ++    R   +  LR GK D+LV  ++   
Sbjct: 324 VIVFVRTKAATEEIADKLKARGYTAAAINGDIPQNLRERTVDSLREGKIDILVATDVAAR 383

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+    LV   D           S +  IGR  R       IL+     K +  AI++
Sbjct: 384 GLDVERISLVVNYD-----IPHDTESYVHRIGRTGRAGRKGEAILFMTPREKYLLRAIEK 438

Query: 704 TTRRREKQL 712
            TR+  +Q+
Sbjct: 439 ATRQPVEQM 447


>gi|42573778|ref|NP_974985.1| ethylene-responsive DEAD box RNA helicase, putative (RH30)
           [Arabidopsis thaliana]
 gi|108861888|sp|Q8W4R3|RH30_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 30
 gi|110741550|dbj|BAE98724.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|332010323|gb|AED97706.1| DEAD-box ATP-dependent RNA helicase 30 [Arabidopsis thaliana]
          Length = 591

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 71/185 (38%), Gaps = 15/185 (8%)

Query: 524 TTIVVSAT-PGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT P   E        +  + II    ++    ++  +EI     +   +   +
Sbjct: 345 QTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLL 404

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G +IL+ V TKR  + +T  L         +H +    ER  ++ + + G+  +
Sbjct: 405 KQLMD-GSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPI 463

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  +    I  IGR  R   +K + +      
Sbjct: 464 MTATDVAARGLDVKDIKCVVNYD-----FPNTLEDYIHRIGRTGRAG-AKGMAFTFFTHD 517

Query: 696 SIQLA 700
           + + A
Sbjct: 518 NAKFA 522


>gi|296817029|ref|XP_002848851.1| eukaryotic initiation factor 4A-12 [Arthroderma otae CBS 113480]
 gi|302506162|ref|XP_003015038.1| hypothetical protein ARB_06798 [Arthroderma benhamiae CBS 112371]
 gi|238839304|gb|EEQ28966.1| eukaryotic initiation factor 4A-12 [Arthroderma otae CBS 113480]
 gi|291178609|gb|EFE34398.1| hypothetical protein ARB_06798 [Arthroderma benhamiae CBS 112371]
 gi|326469057|gb|EGD93066.1| eukaryotic initiation factor 4A-12 [Trichophyton tonsurans CBS
           112818]
 gi|326480615|gb|EGE04625.1| eukaryotic initiation factor 4A-12 [Trichophyton equinum CBS
           127.97]
          Length = 399

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 198 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCD 257

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 258 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 312

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 313 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 367

Query: 691 DTITK 695
            T   
Sbjct: 368 VTSED 372


>gi|120405422|ref|YP_955251.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119958240|gb|ABM15245.1| ATP-dependent RNA helicase CsdA [Mycobacterium vanbaalenii PYR-1]
          Length = 564

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 9/160 (5%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +QG  +++ V TK+  E++ E L  R      ++ ++    R   I  L+ G  D+LV 
Sbjct: 248 VEQGDAMIVFVRTKQATEEVAEKLRSRGFAAAAINGDIPQAVRERTISQLKDGTIDILVA 307

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+     V   D           S +  IGR  R   S   L   T  +   
Sbjct: 308 TDVAARGLDVERISHVVNFD-----IPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHL 362

Query: 699 L-AIDETTRRREKQLEHNKKHNINPQSVKE---KIMEVID 734
           L AI+  TR++  + E     ++N + V +    I + ++
Sbjct: 363 LGAIERVTRQKLVESELPSVEDVNEKRVAKFRDSITDALE 402


>gi|256077046|ref|XP_002574819.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238660034|emb|CAZ31052.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 637

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 6/135 (4%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D   ++   ++ G  IL+ V T+R A+ L  YLY +  +V  +H +    +R   +   R
Sbjct: 419 DTLIDLLAHSEAGTLILVFVETRRGADALENYLYSQKFQVASIHGDRTQEDRELALSCFR 478

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G+  VLV   +   GLDIP    V   D             +  IGR  R  N      
Sbjct: 479 SGRTPVLVATAVAARGLDIPNVKHVINYD-----LPSDIEEYVHRIGRTGRVGNLGLATS 533

Query: 689 YADTITKSIQLAIDE 703
           + +   +++   + E
Sbjct: 534 FFNDKNRNLARGLVE 548


>gi|327262891|ref|XP_003216257.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like [Anolis
           carolinensis]
          Length = 1021

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 18/184 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE---------QIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E+++  G  ++         Q+      V+  +   +   + E + + 
Sbjct: 402 QTLMFSAT-FPEEIQRLAGEFLKVDYLFVVVGQVGGACSDVEQTILQVNQYDKREKLLEI 460

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +N   +   R ++ V TK+ A+ +  +L +  I    +H + +  ER E ++  R GK  
Sbjct: 461 LNAIGK--ERTMVFVETKKKADFIATFLCQEYIPTTSIHGDREQREREEALQCFRSGKCP 518

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTI 693
           VLV  ++   GLDI     V   D        +    +  IGR  R  N+ K I + D  
Sbjct: 519 VLVATSVAARGLDIENVQHVINFD-----LPSAIDEYVHRIGRTGRCGNTGKAISFFDPR 573

Query: 694 TKSI 697
           + S 
Sbjct: 574 SDSS 577


>gi|16802907|ref|NP_464392.1| hypothetical protein lmo0866 [Listeria monocytogenes EGD-e]
 gi|224499403|ref|ZP_03667752.1| hypothetical protein LmonF1_06772 [Listeria monocytogenes Finland
           1988]
 gi|224503166|ref|ZP_03671473.1| hypothetical protein LmonFR_11698 [Listeria monocytogenes FSL
           R2-561]
 gi|254827809|ref|ZP_05232496.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165]
 gi|254832169|ref|ZP_05236824.1| hypothetical protein Lmon1_12514 [Listeria monocytogenes 10403S]
 gi|254898962|ref|ZP_05258886.1| hypothetical protein LmonJ_04075 [Listeria monocytogenes J0161]
 gi|254911550|ref|ZP_05261562.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818]
 gi|254935876|ref|ZP_05267573.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900]
 gi|16410269|emb|CAC98944.1| lmo0866 [Listeria monocytogenes EGD-e]
 gi|258600190|gb|EEW13515.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165]
 gi|258608464|gb|EEW21072.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900]
 gi|293589496|gb|EFF97830.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818]
          Length = 520

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 98/256 (38%), Gaps = 16/256 (6%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P     E+         I+   +    +E    +   ++ +D ++    
Sbjct: 177 QTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLD 236

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV 
Sbjct: 237 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R       I +        
Sbjct: 297 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGY 351

Query: 698 QLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
              ++ETT++R + L+    ++      +   EKI E I    L D  T    +  +  +
Sbjct: 352 LRIVEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDA 411

Query: 755 LSKKKGKAHLKSLRKQ 770
                  A LK L K+
Sbjct: 412 TDIA--AAMLKMLAKE 425


>gi|326429718|gb|EGD75288.1| DEAD/H box polypeptide 3 [Salpingoeca sp. ATCC 50818]
          Length = 710

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 76/193 (39%), Gaps = 14/193 (7%)

Query: 522 RPTTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
              T++ SAT P   +      L  C  I V +I   T  +   V       + + + D 
Sbjct: 409 VRQTLMFSATFPKDIQVLARDFLHDCVSISVGRIGSTTENIFQKVYWVQEHEKRQTLLDL 468

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I+ A+++ L +L+ V TKR A+ L ++L  +      +H +    +R   +   R G   
Sbjct: 469 ISAASEKEL-VLVFVETKRGADALEDFLIHQQFPASSIHGDRTQEQRERALASFRDGYTP 527

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           +LV   +   GLDIP    V   D             +  IGR  R  +    I + +  
Sbjct: 528 ILVATAVAARGLDIPNVKRVINFD-----LPSDIDEYVHRIGRTGRVGHKGQAISFFNDK 582

Query: 694 TKSIQLAIDETTR 706
             ++   + +T R
Sbjct: 583 NANVARDLLDTLR 595


>gi|237755972|ref|ZP_04584559.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691876|gb|EEP60897.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 405

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 11/182 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
             ++ SAT     LE  +  + E      ++P  +    ++    R    D + ++    
Sbjct: 182 QILLFSATMPKEILELAEEFLNENYETIKVKPDEVTVEKIKQIIYRVNPRDKFKKLTEVL 241

Query: 580 QQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            Q    ++++   TK  A++L E L E       +H +    +R  ++ + R GK  +LV
Sbjct: 242 SQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKILV 301

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI    LV        G  R   S I  IGR  R       +   T ++  
Sbjct: 302 ATDVAARGLDIKGVDLVINY-----GLPRDAESYIHRIGRTGRAGREGTAISIMTSSEDK 356

Query: 698 QL 699
           QL
Sbjct: 357 QL 358


>gi|255089378|ref|XP_002506611.1| predicted protein [Micromonas sp. RCC299]
 gi|226521883|gb|ACO67869.1| predicted protein [Micromonas sp. RCC299]
          Length = 639

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 19/190 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVE-IRSARTQVEDVYDE 574
            T++ SAT    E+++     ++  I            L+   +E ++S   + + + D 
Sbjct: 373 QTMLFSAT-FPKEIQRMASDFLQDYIFLTVGRVGSSHTLITQTIEYVQSYNDKCQMLMDL 431

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++    QGL  L+ V TKR A+ L ++L ++      +H +    ER   ++  R GK  
Sbjct: 432 VHAV--QGL-TLVFVETKRGADQLEDWLSQQGFPSTSIHGDRTQQEREWALKSFRSGKTP 488

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           +LV  ++   GLDIP    V   D             +  IGR  R         +    
Sbjct: 489 ILVATDVAARGLDIPHVTHVINFD-----LPSDVDDYVHRIGRTGRAGKKGLATAFFTDK 543

Query: 694 TKSIQLAIDE 703
             S+   + E
Sbjct: 544 DSSLARGLVE 553


>gi|119495979|ref|XP_001264763.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
 gi|143359979|sp|A1D373|PRP5_NEOFI RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|119412925|gb|EAW22866.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
          Length = 1193

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 96/261 (36%), Gaps = 30/261 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     +E ++    +V P +    E+R+  T+   + + + 
Sbjct: 740 QTVLFSATFPRNMEALARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLEILG 799

Query: 577 LA----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                 A +  R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 800 NLYSDDANEDARALIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGI 859

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F +L+  ++   GLD+ +  LV   DA            +   GR  R  N+   +   T
Sbjct: 860 FPILIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTFLT 914

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  + ++D     R+   +        P+ V++ +   ++ +       +      + 
Sbjct: 915 EEQE-RYSVDIAKALRQSGQK-------VPEPVQKMVDSFLEKVKAGKEKASASGFGGKG 966

Query: 753 LSLSKKKGKAHLKSLRKQMHL 773
           L    ++  A       +M  
Sbjct: 967 LERLDQERDA------ARMRE 981


>gi|295692132|ref|YP_003600742.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
 gi|295030238|emb|CBL49717.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
          Length = 494

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 13/194 (6%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEI 575
           R  T++ SAT   P     E+         I+   L    +E   +R+  ++  D+   +
Sbjct: 175 RQQTLLFSATMPKPILRIGEKFMDHPKIVRIKAKELTADLIEQYFVRAKESEKFDIMCRL 234

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L  L+   TKR  ++LT  L  R      +H ++    R+ +++  R GK D+
Sbjct: 235 IDVQGPDL-ALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDI 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   + + + +     
Sbjct: 294 LVATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRTGRAGQNGISVTFVTPNE 348

Query: 695 KSIQLAIDETTRRR 708
                 I++ T+++
Sbjct: 349 IGYMRTIEQLTKKK 362


>gi|261202786|ref|XP_002628607.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis
           SLH14081]
 gi|225556973|gb|EEH05260.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus G186AR]
 gi|239590704|gb|EEQ73285.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis
           SLH14081]
 gi|239612419|gb|EEQ89406.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis ER-3]
 gi|240277518|gb|EER41026.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus H143]
 gi|325093598|gb|EGC46908.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus H88]
 gi|327355221|gb|EGE84078.1| ATP-dependent RNA helicase FAL1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 399

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 198 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCD 257

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 258 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 312

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 313 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 367

Query: 691 DTITK 695
            T   
Sbjct: 368 VTSED 372


>gi|255940232|ref|XP_002560885.1| Pc16g05440 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585508|emb|CAP93214.1| Pc16g05440 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1162

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 96/258 (37%), Gaps = 25/258 (9%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P S E    +     VE  +    +V   +    E+R+   +   + + + 
Sbjct: 703 QTVLFSATFPKSMEALARKTLNDPVEITVGGKSVVAREITQIVEVRNNDQKFFRLLELLG 762

Query: 577 LA----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                 A +  R L+ V  +  A+DL + L  +      +H     ++R   I++ + G 
Sbjct: 763 NLYEDDANEDYRTLIFVDRQEAADDLLKQLMYKGYPCMSIHGGKDQIDRDSTIQEFKAGV 822

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F +LV  ++   GLD+ +  LV   DA            +   GR  R  N+   +   T
Sbjct: 823 FPILVATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTFVT 877

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  + A+D     ++   E        P+ +++ +++  +  +               
Sbjct: 878 EEQD-RYALDIAKALKQSGQE-------VPEPLQK-LVDGFNEKVKAGKEKNFSRHGFGG 928

Query: 753 LSLSKKKGKAHLKSLRKQ 770
             L +   +     LR++
Sbjct: 929 KGLDRLNMERETARLRER 946


>gi|294056537|ref|YP_003550195.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615870|gb|ADE56025.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 524

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 97/257 (37%), Gaps = 17/257 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPTGLVDPP------VEIRSARTQVEDVYDEI 575
            T+  SAT   G   L +      +QI      +          E+R  R++VE +   +
Sbjct: 180 QTLFFSATMNRGVQGLIKAFSHDAKQIEIEQKTLTVESIEQVYYEVR-NRSKVEVMCRLL 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++  +   R ++   TK+M ED+ E L  R      +H ++    R ++IR  R    ++
Sbjct: 239 DM--EPTQRGIVFCNTKQMVEDVCEALNARGYTADRIHGDISQGIREKVIRRFRDNAIEI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT- 694
           LV  ++   GLDI +  LV   D   +         I   GRA R+  S   +Y   I  
Sbjct: 297 LVATDVAARGLDIDDIELVFNYDLPYD--PEDYVHRIGRTGRAGRSGKSITFVYGRDIRR 354

Query: 695 -KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
            ++I+  I ++ RR     +   +       +  ++ + ++    ++     +       
Sbjct: 355 LEAIERYIRQSIRRTRIPSQEEVE-GYRADKIFNQLRDKLEAAEFKNYD-HQVDRLLDAG 412

Query: 754 SLSKKKGKAHLKSLRKQ 770
                   A +  L  +
Sbjct: 413 HTPTDIASALIDMLHTE 429


>gi|302654809|ref|XP_003019203.1| hypothetical protein TRV_06752 [Trichophyton verrucosum HKI 0517]
 gi|291182911|gb|EFE38558.1| hypothetical protein TRV_06752 [Trichophyton verrucosum HKI 0517]
          Length = 403

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 202 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCD 261

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 262 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 316

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 317 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 371

Query: 691 DTITK 695
            T   
Sbjct: 372 VTSED 376


>gi|149189555|ref|ZP_01867838.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
 gi|148836534|gb|EDL53488.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
          Length = 634

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 79/210 (37%), Gaps = 28/210 (13%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-DPILLEDAATTNISIDAQQLSLS 756
              I+  T                 +S  E+I   + D +           ++ ++   S
Sbjct: 357 LRTIERVT-----------------KSSMEEIQLPLRDKVAEARLVKLGAELEQEKEHKS 399

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
             K    ++ L++ + + A  L    AA +
Sbjct: 400 LDKFAELVEKLQESLEIDAATL----AAIL 425


>gi|39940710|ref|XP_359892.1| eukaryotic initiation factor 4A-12 [Magnaporthe oryzae 70-15]
 gi|152032454|sp|A4QU31|FAL1_MAGO7 RecName: Full=ATP-dependent RNA helicase FAL1
 gi|145010887|gb|EDJ95543.1| eukaryotic initiation factor 4A-12 [Magnaporthe oryzae 70-15]
          Length = 401

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + I     + +   D
Sbjct: 200 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAIEKEDWKFDTLCD 259

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R 
Sbjct: 260 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQ 314

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 315 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 369

Query: 691 DTITK 695
            T   
Sbjct: 370 VTSED 374


>gi|326531018|dbj|BAK04860.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326531744|dbj|BAJ97876.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 415

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 75/188 (39%), Gaps = 16/188 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT--------GLVDPPVEIRSART-QVEDVYDE 574
            T++ SAT   +++E+    I+  +IR T          +   V +  +   ++  + ++
Sbjct: 220 QTLLFSAT-MPYKVERLAREILTDLIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEK 278

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +      G  +L+    K   +++   L +   +V  +H +     R+E ++  + G + 
Sbjct: 279 MPGMIDDGD-VLVFATKKARVDEVENQLNQHGFKVAALHGDKDQASRMETLQKFKSGIYH 337

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   GLDI     V   D  KE  +      I  IGR  R  +     Y     
Sbjct: 338 VLVATDVAARGLDIKSIKTVVNFDIAKEMDMH-----IHRIGRTGRAGDKDGTAYTLITQ 392

Query: 695 KSIQLAID 702
           K  + A +
Sbjct: 393 KESRFAGE 400


>gi|225684976|gb|EEH23260.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb03]
 gi|226294288|gb|EEH49708.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 399

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 198 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCD 257

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 258 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 312

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 313 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 367

Query: 691 DTITK 695
            T   
Sbjct: 368 VTSED 372


>gi|212638043|ref|YP_002314563.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
 gi|212559523|gb|ACJ32578.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
          Length = 471

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 100/256 (39%), Gaps = 16/256 (6%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P     E+         ++   +  P +E      Q +  +D +     
Sbjct: 180 QTLLFSATMPEPIRRIAERFMNNPELVRVKAKEMTVPNIEQYYIEIQEKKKFDTLTRLLD 239

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L E L  R      +H ++   +R+ ++R  + G  D+LV 
Sbjct: 240 IQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIDILVA 299

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R   +   I +        
Sbjct: 300 TDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKTGMAITFVTPREIGQ 354

Query: 698 QLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
              I++TT+R+ ++++    ++      ++  EK++  I+   L         +  +  S
Sbjct: 355 LHHIEKTTKRKMERMKPPTLDEALEGQQRAAIEKLLATIEHNNLAFYKRAAEELLEEHDS 414

Query: 755 LSKKKGKAHLKSLRKQ 770
           +S     A +K L K+
Sbjct: 415 VSL--VAACIKMLTKE 428


>gi|197337466|ref|YP_002157976.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
 gi|197314718|gb|ACH64167.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
          Length = 640

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++   +R   + +++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS-I 697
            +++  GLD+P    V   D   +       S I  IGR  R       +      +  +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQMRM 356

Query: 698 QLAIDETTR 706
              I+  T+
Sbjct: 357 LRTIERVTK 365


>gi|195069886|ref|XP_001997052.1| GH22580 [Drosophila grimshawi]
 gi|193891570|gb|EDV90436.1| GH22580 [Drosophila grimshawi]
          Length = 793

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 76/209 (36%), Gaps = 21/209 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
             ++ SAT      +  +  +   I    G +           V++     ++  +   +
Sbjct: 326 QVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDESEKIAKLVQLL 385

Query: 576 NLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              + +   + ++ V TK+  +++T  +  +  R   +H +    ER  ++   R G+  
Sbjct: 386 TQISGENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHS 445

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   GLD+ +   V   D     +  +    +  IGR  R+ N+    Y     
Sbjct: 446 ILVATDVAARGLDVDDVKFVINYD-----YPSNSEDYVHRIGRTGRSNNTGTA-YTLFTH 499

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            +   A D        Q+       INP+
Sbjct: 500 SNANKAND------LIQVLREANQTINPK 522


>gi|167525138|ref|XP_001746904.1| p68DDX5 RNA helicase [Monosiga brevicollis MX1]
 gi|163774684|gb|EDQ88311.1| p68DDX5 RNA helicase [Monosiga brevicollis MX1]
          Length = 487

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 92/258 (35%), Gaps = 37/258 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++        D     + + + +   +  R     + GF         P   +
Sbjct: 191 TPGRLIDFL--------DTRKTNLRRCTYLVLDEADRM---LDMGFE--------PQLRK 231

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIR----------PTGLVDPPVEIRSA 564
             + +RP   T++ SAT      +     + + +IR             +    + ++  
Sbjct: 232 IVSQIRPDRQTLMWSATWPKEVQQLAYEFLGQDVIRVQIGAIGLSANHRIKQHVMIMQDY 291

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q E       +  Q+  + ++   TKR  +DLT  L         MH + +  ER  +
Sbjct: 292 DKQRELFRLLDEIMRQKENKTIIFAETKRNVDDLTRNLRREGFPAMCMHGDKQQRERDTV 351

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + R G+  +L+  ++   GLD+ +   V   D     +  +    +  IGR AR    
Sbjct: 352 LAEFRDGRHPILIATDVASRGLDVKDIKYVINFD-----YPNNSEDYVHRIGRTARGGGE 406

Query: 685 KVILYADTITKSIQLAID 702
               Y    +K+ + A D
Sbjct: 407 GTA-YTFFSSKNARQAKD 423


>gi|78486348|ref|YP_392273.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2]
 gi|78364634|gb|ABB42599.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
          Length = 574

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 73/186 (39%), Gaps = 8/186 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TK    +L E L  R      ++ +V   +R   +  L+ GK D+L+  +++  
Sbjct: 247 IIIFVRTKTATVELAEKLEARGYAAAALNGDVAQNQRERTVDQLKKGKLDILIATDVVAR 306

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     + +  +I+ 
Sbjct: 307 GLDVERISHVINYD-----IPYDNESYVHRIGRTGRAGRSGTAILFVAPRERRLLRSIEA 361

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA--TTNISIDAQQLSLSKKKGK 761
           +T+++  Q+E      IN   +     +++D     D       +       ++   +  
Sbjct: 362 STKKKITQMELPTAQEINDSRITRFKDKIVDAAQGTDLDFYQKMVESIESDNNIPAIEIA 421

Query: 762 AHLKSL 767
           A L  L
Sbjct: 422 AGLAKL 427


>gi|327294865|ref|XP_003232128.1| eukaryotic initiation factor 4A-12 [Trichophyton rubrum CBS 118892]
 gi|326466073|gb|EGD91526.1| eukaryotic initiation factor 4A-12 [Trichophyton rubrum CBS 118892]
          Length = 399

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 198 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCD 257

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 258 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 312

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 313 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 367

Query: 691 DTITK 695
            T   
Sbjct: 368 VTSED 372


>gi|326430178|gb|EGD75748.1| eIF-4a [Salpingoeca sp. ATCC 50818]
          Length = 409

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 85/209 (40%), Gaps = 27/209 (12%)

Query: 515 FEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSA 564
           ++ +  L      I++SAT     LE  +  + + I        +   G+    V++   
Sbjct: 200 YDIFQTLPKDVQVILISATMPDDVLEVTKRFMRDPIRILVKKEQLTLEGIRQFYVDVGKE 259

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D I          ++   T+R  + LTE L  R  +V   H ++   ER  I
Sbjct: 260 DWKLETLSD-IWKTITISQ-AVIFCNTRRKVDWLTEQLRARGHQVSCTHGDMTQDERNMI 317

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +++ R G   VL+  +LL  G+D+ +  LV   D        ++ + +  IGR+ R    
Sbjct: 318 MKEFRAGSTRVLITTDLLARGIDVQQVSLVINFD-----LPSNRENYLHRIGRSGRFGRK 372

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLE 713
            V +            + E   RR K+LE
Sbjct: 373 GVAINF----------VAEDDVRRLKELE 391


>gi|115910860|ref|XP_001177628.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68
           [Strongylocentrotus purpuratus]
 gi|115968720|ref|XP_001178951.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 1
           [Strongylocentrotus purpuratus]
          Length = 600

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 14/156 (8%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + +EI    ++  + L+   TKR  +DL   +         +H +    ER  ++ + R
Sbjct: 347 QLLEEIMQ--EKDNKTLVFCETKRRTDDLVRRMRRDGWPAMCLHGDKSQPERDWVLSEFR 404

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+  +LV  ++   GLD+ +   V   D     +  S    +  IGR AR+  +    Y
Sbjct: 405 DGRAPILVATDVASRGLDVTDIKFVINYD-----YPNSSEDYVHRIGRTARSTRTGTA-Y 458

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
                 +++ A D        Q     K  INP+ +
Sbjct: 459 TFFTRNNMKQAADLIN---VLQEA---KQVINPKLI 488


>gi|28900463|ref|NP_800118.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365616|ref|ZP_05778137.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030]
 gi|260877415|ref|ZP_05889770.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034]
 gi|260898897|ref|ZP_05907338.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466]
 gi|260901269|ref|ZP_05909664.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037]
 gi|28808843|dbj|BAC61951.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308089202|gb|EFO38897.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466]
 gi|308090808|gb|EFO40503.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034]
 gi|308106808|gb|EFO44348.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037]
 gi|308111459|gb|EFO48999.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030]
          Length = 643

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 74/204 (36%), Gaps = 30/204 (14%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-DPILLEDAATTNISIDAQQLSLS 756
              I+  T                 +S  E+I   + D +           ++A++   +
Sbjct: 357 LRTIERVT-----------------KSSMEEIQLPLRDQVAEARLNKLAAELEAEKEHKA 399

Query: 757 KKKGKAHLKSLRK------QMHLA 774
             K    ++ L+        M  A
Sbjct: 400 LDKFAELVEKLQTSLEIDPAMLAA 423


>gi|242005744|ref|XP_002423722.1| predicted protein [Pediculus humanus corporis]
 gi|212506907|gb|EEB10984.1| predicted protein [Pediculus humanus corporis]
          Length = 1130

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 585  ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            +L+ V +K  A++L   L    I V  +HS+    +R  +IR  R GK  VL+   L+  
Sbjct: 1001 VLVFVQSKERAQELFNELVYDGINVDVIHSDRTQKQRDNVIRSFREGKIWVLICTELMGR 1060

Query: 645  GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
            G+D     LV   D     F  S  S I  IGR  R       I Y          A +E
Sbjct: 1061 GIDFKGVNLVVNYD-----FPPSSVSYIHRIGRTGRAGRPGRAITYF--TQDDTHCANNE 1113

Query: 704  TTRRR 708
              R R
Sbjct: 1114 KCRLR 1118


>gi|126698341|ref|YP_001087238.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|254974380|ref|ZP_05270852.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-66c26]
 gi|255091773|ref|ZP_05321251.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
           107932]
 gi|255099876|ref|ZP_05328853.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-63q42]
 gi|255305765|ref|ZP_05349937.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
           43255]
 gi|255313504|ref|ZP_05355087.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-76w55]
 gi|255516192|ref|ZP_05383868.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-97b34]
 gi|255649288|ref|ZP_05396190.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-37x79]
 gi|260682458|ref|YP_003213743.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260686057|ref|YP_003217190.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|306519386|ref|ZP_07405733.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-32g58]
 gi|115249778|emb|CAJ67595.1| putative ATP-dependent RNA helicase [Clostridium difficile]
 gi|260208621|emb|CBA61352.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260212073|emb|CBE02663.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 537

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 80/201 (39%), Gaps = 17/201 (8%)

Query: 524 TTIVVSAT-P-GSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T   SAT P G  EL +      E I      +  +      +E RS+  ++E +   +
Sbjct: 180 QTTFFSATMPRGILELTKRYQKDPEHIKVVRKELTVSNTKQYYIETRSS-NKLEVLCRLV 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++   +    ++   TKR A++L   L  R      +H ++K  +R  ++   R G  D+
Sbjct: 239 DVYDPK--LSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRNGTIDI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+D+ +   V   D       + +   +  IGR  R      + +     K
Sbjct: 297 LVATDVAARGIDVDDVECVFNYD-----LPQDEEYYVHRIGRTGRAGREG-MSFTFVFGK 350

Query: 696 SIQLAIDETTRRREKQLEHNK 716
            ++   D     + K ++HN 
Sbjct: 351 EMRKMKDIERYTKSKLIKHNI 371


>gi|67603410|ref|XP_666549.1| RNA helicase-1 [Cryptosporidium hominis TU502]
 gi|54657570|gb|EAL36322.1| RNA helicase-1 [Cryptosporidium hominis]
          Length = 251

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 6/132 (4%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q   +   ++   +   R+L+    K+  +++ EYL  + +    +H  +   +R   I 
Sbjct: 40  QERRLVSLLSCLQKTAPRVLIFSENKKDVDEIHEYLLLKGVNAVAIHGGLTQEQRFRSIE 99

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R G+ DVLVG ++  +GLD      V   D  K+       + +  IGR  R  +  V
Sbjct: 100 QFRNGEMDVLVGTDVASKGLDFENIQHVINFDMPKD-----IENYVHRIGRTGRGGSVGV 154

Query: 687 -ILYADTITKSI 697
              + D      
Sbjct: 155 STTFIDNTLPEA 166


>gi|284166979|ref|YP_003405258.1| ERCC4 domain protein [Haloterrigena turkmenica DSM 5511]
 gi|284016634|gb|ADB62585.1| ERCC4 domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 820

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 84/188 (44%), Gaps = 19/188 (10%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-------HSEVKTLERIEIIRDLRLGK 632
           + G R+++   ++  AE LT++L E     R++          +   E+ E++   R G+
Sbjct: 370 EGGERVIVFTESRDTAEALTDFLSESFDAKRFVGQGDREGSDGMTQTEQQEVLDQFRGGE 429

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YAD 691
           F+VLV  ++  EGLD+PE  LV   +      + +    IQ  GR  R    +V++  A+
Sbjct: 430 FEVLVSTSVAEEGLDVPEVDLVLFYEP-----VPTAIRSIQRKGRTGRQSEGRVVVLMAE 484

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                    I   +RRREK++E   +   + + V + + E +D          + + +++
Sbjct: 485 DTRDEAYFWI---SRRREKEMESELR---DLKGVADDLEEELDDSQQALTDFDDDAPESE 538

Query: 752 QLSLSKKK 759
                + +
Sbjct: 539 VKVDDRGE 546


>gi|209880596|ref|XP_002141737.1| eukaryotic translation initiation factor 4A [Cryptosporidium muris
           RN66]
 gi|209557343|gb|EEA07388.1| eukaryotic translation initiation factor 4A, putative
           [Cryptosporidium muris RN66]
          Length = 404

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 7/130 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   T+   + LT+ + +R+     MH ++   +R  I+R  R G   VL+  +LL 
Sbjct: 272 QAIIYCNTRIRVDRLTKQMTDRDFTCSCMHGDMDQKDREVIMRQFRSGSSRVLITTDLLA 331

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            G+D+ +  LV   D        S  + I  IGR+ R     V +   T+       + +
Sbjct: 332 RGIDVQQVSLVINYD-----LPVSAETYIHRIGRSGRFGRKGVAVNFVTVDD--IEHLRD 384

Query: 704 TTRRREKQLE 713
             R    Q+E
Sbjct: 385 IERHYNTQIE 394


>gi|300088260|ref|YP_003758782.1| DEAD/DEAH box helicase domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527993|gb|ADJ26461.1| DEAD/DEAH box helicase domain protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 429

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 16/204 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-----VYDEINLA 578
            T++ SAT  +   +  Q  + + +    G V P V +  A   V       +  +I   
Sbjct: 178 QTLLFSATMPADVRKLVQEFLTDPVTVQIGTVAPAVTVTHALYPVRQDLKTALLKQILRQ 237

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +    +L+   TK   E +   L +    V  +   +    R   +   + G F VLV 
Sbjct: 238 IEDAGSVLVFTRTKHRTERVAIALRQAGYAVASIQGNLSQYRRQAALDGFKDGTFKVLVA 297

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   G+D+ +   V   D        +  + I  IGR  R   S     +     +S+
Sbjct: 298 TDIASRGIDVSDVSHVINYD-----MPDTADAYIHRIGRTGRIGRSGDAFTFVTPEDESM 352

Query: 698 QLAID-----ETTRRREKQLEHNK 716
             A++        RR  +  ++N 
Sbjct: 353 VRALEKLLKTTIERRTVEGFDYNA 376


>gi|241737496|ref|XP_002414033.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215507887|gb|EEC17341.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 402

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 22/193 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              +++SAT     LE     + + +        +   G+    V +     + +   D+
Sbjct: 203 TQVVLISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 262

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TKR  + L+E + E N  V  MH ++   ER  I+++ R G
Sbjct: 263 YDTLTIT-----QAVIFCNTKRKVDWLSEKMREANFTVSSMHGDMPQKERDAIMKEFRSG 317

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
              VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I + 
Sbjct: 318 SSRVLITTDIWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFV 372

Query: 691 DTITKSIQLAIDE 703
                 I   I++
Sbjct: 373 KNDDIRILRDIEQ 385


>gi|70663482|emb|CAJ15140.1| PL10a protein [Platynereis dumerilii]
          Length = 771

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TK+ A+ L  +LY        +H +    ER E +R+ R GK  VLV   +   
Sbjct: 551 TLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKEREEALRNFRSGKTPVLVATAVAAR 610

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI--LYADTITKSIQLAID 702
           GLDIP    V   D             +  IGR  R  N  +    + D     ++  +D
Sbjct: 611 GLDIPNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNKNIVRDMVD 665


>gi|70663484|emb|CAJ15141.1| PL10b protein [Platynereis dumerilii]
          Length = 816

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TK+ A+ L  +LY        +H +    ER E +R+ R GK  VLV   +   
Sbjct: 596 TLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKEREEALRNFRSGKTPVLVATAVAAR 655

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI--LYADTITKSIQLAID 702
           GLDIP    V   D             +  IGR  R  N  +    + D     ++  +D
Sbjct: 656 GLDIPNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNKNIVRDMVD 710


>gi|262403377|ref|ZP_06079937.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC586]
 gi|262350876|gb|EEZ00010.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC586]
          Length = 464

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 15/190 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +G++   VE  + P       VE  I  A   V+     + 
Sbjct: 178 KRQNLLFSATFSAEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD--VKKKPAMLV 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             A++G   ++L+ + TK  A  L  YL E+ +    +H       R   + D + G+  
Sbjct: 236 KLAKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +LV  ++   G+DIP+   V   +  K          +  IGR  R     K I     I
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKI-----AEDYVHRIGRTGRAGEVGKAISLVSAI 350

Query: 694 TKSIQLAIDE 703
                 AI+ 
Sbjct: 351 EAPELFAIER 360


>gi|145603330|ref|XP_369345.2| hypothetical protein MGG_06119 [Magnaporthe oryzae 70-15]
 gi|145011584|gb|EDJ96240.1| hypothetical protein MGG_06119 [Magnaporthe oryzae 70-15]
          Length = 643

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 6/140 (4%)

Query: 566 TQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
            +V ++     +A   G +  L+  +       LT+   E  I  R++  +   +ER E 
Sbjct: 252 NEVNEITVRSWMAKAPGRKSTLVFCVDLAHVNGLTQKFREFGIDARFVTGDTHKVERSER 311

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + R GKF VLV   +  EG DIP    V +    K     S+  L+Q IGR  R    
Sbjct: 312 LEEFRAGKFPVLVNCGVFTEGTDIPNIDCVVLARPTK-----SRNLLVQMIGRGMRLHPG 366

Query: 685 KVILYADTITKSIQLAIDET 704
           K       +  S++  I  T
Sbjct: 367 KKNCQIIDMVSSLETGIVTT 386


>gi|294852360|ref|ZP_06793033.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NVSL 07-0026]
 gi|294820949|gb|EFG37948.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NVSL 07-0026]
          Length = 488

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 232 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 281

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 282 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 341

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 342 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 401

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 402 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 451


>gi|119182910|ref|XP_001242554.1| hypothetical protein CIMG_06450 [Coccidioides immitis RS]
          Length = 388

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +V+SAT     L      + + +        +   GL    + +     + +   D
Sbjct: 169 ATQVVVLSATLPYDVLSMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCD 228

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 229 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 283

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 284 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 338

Query: 691 DTITK 695
            T   
Sbjct: 339 VTSED 343


>gi|320590131|gb|EFX02574.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 713

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ L+++L  +N     +H +    ER   +   R G+  +LV   +   
Sbjct: 480 TLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAAR 539

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           GLDIP    V   D             +  IGR  R  N+ 
Sbjct: 540 GLDIPNVTHVVNYD-----LPTDIDDYVHRIGRTGRAGNTG 575


>gi|295669632|ref|XP_002795364.1| pre-mRNA-processing ATP-dependent RNA helicase prp5
           [Paracoccidioides brasiliensis Pb01]
 gi|226285298|gb|EEH40864.1| pre-mRNA-processing ATP-dependent RNA helicase prp5
           [Paracoccidioides brasiliensis Pb01]
          Length = 532

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 93/251 (37%), Gaps = 26/251 (10%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     VE ++    +V P +    E+R+  T+   +   + 
Sbjct: 149 QTVLFSATFPRNMEALARKTLTKPVEIVVGGRSVVAPEITQIVEVRNEDTKFVRLLALLG 208

Query: 577 LAAQQGL----RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 209 DLYADDNNEDARTLIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIADFKAGV 268

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
           F +L+  ++   GLD+ +  LV   DA            +   GR  R  N+   + +  
Sbjct: 269 FPILIATSVAARGLDVKQLKLVINYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTFLT 323

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
            + +   + I +  ++  +Q          P++V++ +   I+ +       +      +
Sbjct: 324 EVQERYSVDISKALKQSGQQ---------VPEAVQKMVNSFIEKVKAGKEKASGSGFGGK 374

Query: 752 QLSLSKKKGKA 762
            L    ++  A
Sbjct: 375 GLERLDQERDA 385


>gi|255654809|ref|ZP_05400218.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-23m63]
 gi|296449553|ref|ZP_06891330.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
 gi|296878124|ref|ZP_06902139.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
 gi|296261617|gb|EFH08435.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
 gi|296430877|gb|EFH16709.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
          Length = 537

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 80/201 (39%), Gaps = 17/201 (8%)

Query: 524 TTIVVSAT-P-GSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T   SAT P G  EL +      E I      +  +      +E RS+  ++E +   +
Sbjct: 180 QTTFFSATMPRGILELTKRYQKDPEHIKVVRKELTVSNTKQYYIETRSS-NKLEVLCRLV 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++   +    ++   TKR A++L   L  R      +H ++K  +R  ++   R G  D+
Sbjct: 239 DVYDPK--LSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRNGTIDI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+D+ +   V   D       + +   +  IGR  R      + +     K
Sbjct: 297 LVATDVAARGIDVDDVECVFNYD-----LPQDEEYYVHRIGRTGRAGREG-MSFTFVFGK 350

Query: 696 SIQLAIDETTRRREKQLEHNK 716
            ++   D     + K ++HN 
Sbjct: 351 EMRKMKDIERYTKSKLIKHNI 371


>gi|222144592|gb|ACM46113.1| DDX3/PL10 DEAD-box RNA helicase [Schmidtea polychroa]
          Length = 458

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 70/188 (37%), Gaps = 15/188 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIR--PTGLVDPPVEIRSA----RTQVEDVYDEIN 576
            T++ SAT P   ++     +     +R    G     +  R        + + + D + 
Sbjct: 147 QTLMFSATFPKEIQMLASDFLQDYLFLRVGKVGSTSQNITQRIVYVDESEKRDHLLDILA 206

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               + L IL+ V TKR A+ L  +L+    RV  +H +    +R   ++  R G+  +L
Sbjct: 207 DIDSESL-ILVFVETKRGADSLEGFLHGEGFRVASIHGDRSQSDRELALQCFRDGRTPIL 265

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTIT 694
           V   +   GLDIP    V   D             +  IGR  R  N    +  Y D   
Sbjct: 266 VATAVAARGLDIPNVKFVINYD-----LPTDIEEYVHRIGRTGRVGNLGEAISFYTDKNN 320

Query: 695 KSIQLAID 702
              +  +D
Sbjct: 321 NVAKELVD 328


>gi|19387223|gb|AAL87142.1|AF479823_1 DEAD box RNA helicase Vasa [Pantodon buchholzi]
          Length = 394

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 69/182 (37%), Gaps = 16/182 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE--------QIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT            +          Q+      V+  V   S  ++ E + + +
Sbjct: 148 QTLMFSATYPEDIQRLAADFLKRDYLFLVVGQVGGACNDVEQHVVEVSQYSKREQLVEIL 207

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   R ++ V TKR A+ +  +L +  I    +H + +  ER + + D R GK  V
Sbjct: 208 --RTTGNERTMVFVETKRKADFIATFLCQEQISTTSIHGDREQREREQALGDFRSGKCPV 265

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTIT 694
           LV  ++   GLDI     V   D        +    +  IGR  R  N+ K I + D   
Sbjct: 266 LVATSVAARGLDIEHVQHVVNFD-----LPSTIDEYVHRIGRTGRCGNTGKAISFFDPEA 320

Query: 695 KS 696
            +
Sbjct: 321 DA 322


>gi|325120651|emb|CBZ56206.1| DEAD-box ATP-dependent RNA helicase 34, related [Neospora caninum
           Liverpool]
          Length = 411

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 19/209 (9%)

Query: 515 FEEWNCLRP--TTIVVSATPGSWELEQCQGII---VEQIIRPT-----GLVDPPVEIRSA 564
           ++ +  L P     + SAT     LE     +      +++       G+    V +   
Sbjct: 202 YDVFKKLPPDVQVALFSATMPQDILELTTKFMRDPKRILVKNDELTLEGIRQFYVAVEKE 261

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D          + ++   T+R  + LT  + ER+  V  MH ++    R  I
Sbjct: 262 DWKLETLCDLYETLTIT--QAIIYCNTRRKVDFLTSKMSERDFTVSSMHGDMDQKSREMI 319

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D        +K + I  IGR+ R    
Sbjct: 320 MREFRSGSTRVLITTDLLARGIDVQQVSLVINYD-----LPATKENYIHRIGRSGRFGRK 374

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLE 713
            V +   T +      + E  +    Q+E
Sbjct: 375 GVAINFVTSSDV--EQLKEIEKHYNTQIE 401


>gi|153939895|ref|YP_001390000.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
           Langeland]
 gi|152935791|gb|ABS41289.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
           Langeland]
 gi|295318086|gb|ADF98463.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
           230613]
          Length = 425

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 91/254 (35%), Gaps = 41/254 (16%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
                ++ SAT    E+ +    IV+  IR        VE+    + V+ +  E+    +
Sbjct: 179 KVRQNLLFSAT-MPSEITKLVDSIVKDPIR--------VEVTPVSSTVDTITQEVYHVRK 229

Query: 581 QGLRIL--------------LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +  R L              +   TKR A  + + L E  I    +H       R   + 
Sbjct: 230 KQKRALLKHLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALN 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + + GK  VLV  ++   G+D+ E   V   +           + +  IGR  R     V
Sbjct: 290 NFKEGKIRVLVATDIAARGIDVNELSHVFNYN-----LPDVPETYVHRIGRTGRAGAKGV 344

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
            +            I+ET   +  +   NK+    P  V E+    I  I  ++    N 
Sbjct: 345 AISFCD--------IEETKSLKAIEKLINKE---IP--VVEEHPYKIRHINEDEVKKENT 391

Query: 747 SIDAQQLSLSKKKG 760
           + ++ +   SK++G
Sbjct: 392 NNNSNKKPSSKRQG 405


>gi|116872279|ref|YP_849060.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741157|emb|CAK20277.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 518

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 98/256 (38%), Gaps = 16/256 (6%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P     E+         I+   +    +E    +   ++ +D ++    
Sbjct: 177 QTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLD 236

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV 
Sbjct: 237 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R       I +        
Sbjct: 297 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGY 351

Query: 698 QLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
              ++ETT++R + L+    ++      +   EKI E I    L D  T    +  +  +
Sbjct: 352 LRIVEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANQLLEKYDA 411

Query: 755 LSKKKGKAHLKSLRKQ 770
                  A LK L K+
Sbjct: 412 TDIA--AAMLKMLAKE 425


>gi|315049467|ref|XP_003174108.1| ATP-dependent RNA helicase fal1 [Arthroderma gypseum CBS 118893]
 gi|311342075|gb|EFR01278.1| ATP-dependent RNA helicase fal1 [Arthroderma gypseum CBS 118893]
          Length = 403

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 202 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCD 261

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 262 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 316

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 317 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 371

Query: 691 DTITK 695
            T   
Sbjct: 372 VTSED 376


>gi|291395377|ref|XP_002714089.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 4
           [Oryctolagus cuniculus]
          Length = 692

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 14/182 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL------ 577
            T++ SAT    E+++  G  ++       +       R  +  V  +            
Sbjct: 444 QTLMFSAT-FPEEIQRLAGEFLKSTYLFVAVGQVGGACRDVQQTVVQIGQYSKREKLVEI 502

Query: 578 -AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VL
Sbjct: 503 LRNTGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVL 562

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D        +    +  IGR  R  N+   I + D  + 
Sbjct: 563 VATSVAARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDPESD 617

Query: 696 SI 697
           + 
Sbjct: 618 NH 619


>gi|291395375|ref|XP_002714088.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3
           [Oryctolagus cuniculus]
          Length = 706

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 14/182 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL------ 577
            T++ SAT    E+++  G  ++       +       R  +  V  +            
Sbjct: 458 QTLMFSAT-FPEEIQRLAGEFLKSTYLFVAVGQVGGACRDVQQTVVQIGQYSKREKLVEI 516

Query: 578 -AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VL
Sbjct: 517 LRNTGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVL 576

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D        +    +  IGR  R  N+   I + D  + 
Sbjct: 577 VATSVAARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDPESD 631

Query: 696 SI 697
           + 
Sbjct: 632 NH 633


>gi|291395373|ref|XP_002714087.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2
           [Oryctolagus cuniculus]
          Length = 701

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 14/182 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL------ 577
            T++ SAT    E+++  G  ++       +       R  +  V  +            
Sbjct: 450 QTLMFSAT-FPEEIQRLAGEFLKSTYLFVAVGQVGGACRDVQQTVVQIGQYSKREKLVEI 508

Query: 578 -AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VL
Sbjct: 509 LRNTGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVL 568

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D        +    +  IGR  R  N+   I + D  + 
Sbjct: 569 VATSVAARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDPESD 623

Query: 696 SI 697
           + 
Sbjct: 624 NH 625


>gi|291395371|ref|XP_002714086.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1
           [Oryctolagus cuniculus]
          Length = 729

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 14/182 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL------ 577
            T++ SAT    E+++  G  ++       +       R  +  V  +            
Sbjct: 478 QTLMFSAT-FPEEIQRLAGEFLKSTYLFVAVGQVGGACRDVQQTVVQIGQYSKREKLVEI 536

Query: 578 -AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VL
Sbjct: 537 LRNTGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVL 596

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D        +    +  IGR  R  N+   I + D  + 
Sbjct: 597 VATSVAARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDPESD 651

Query: 696 SI 697
           + 
Sbjct: 652 NH 653


>gi|296129739|ref|YP_003636989.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296021554|gb|ADG74790.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 581

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 71/191 (37%), Gaps = 15/191 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-------IRSARTQVEDVYDEIN 576
              + SAT            +V  +          VE       +   R +   +   + 
Sbjct: 191 QVALFSATMPPQIRRVADQHLVNPVSVAVSRQSSTVESVRQTYAVVPYRHKAGALARVL- 249

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            A       ++ V T+  AE++   L +R I   ++  +V   +R  I+  LR G  DVL
Sbjct: 250 -AVSDADAAIVFVRTREAAEEIGNVLVQRGIAAAHISGDVAQADRERIVERLRSGTLDVL 308

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLD+   GLV  LD  +E       + +  IGR  R   +   + +     +
Sbjct: 309 VATDVAARGLDVERIGLVVNLDLPRE-----PEAYVHRIGRTGRAGRTGEALTFVTPSER 363

Query: 696 SIQLAIDETTR 706
                I+ TTR
Sbjct: 364 PRLRQIERTTR 374


>gi|77464394|ref|YP_353898.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides 2.4.1]
 gi|77388812|gb|ABA79997.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides 2.4.1]
          Length = 461

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 80/239 (33%), Gaps = 31/239 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L + +  ++++     ++ + +              + + GF       +   +  
Sbjct: 140 TPGRLIDLLDRNAVVLDHTGYLVLDEAD-----------QMLDMGFI------HSLRKIA 182

Query: 517 EWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQI-----IRPTGLVDPPVEIRSARTQVE 569
            +  L+  T++ SAT      EL         ++      +P   +   V       + +
Sbjct: 183 RFLPLKRQTLLFSATMPKLIEELAHTYLREPVKVQVAPPGKPVEKIAQGVHFTPQGDKAK 242

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   +      G + L+   TK  +E L + L     +   +H      +R   + + R
Sbjct: 243 LLESYLQ--KHPGEQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFR 300

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G  DVLV  ++   G+DIP    V   D           + +  IGR AR       +
Sbjct: 301 DGSLDVLVATDVAARGIDIPGVRHVYNYD-----MPNVPENYVHRIGRTARAGAEGSAV 354


>gi|307182555|gb|EFN69748.1| ATP-dependent RNA helicase bel [Camponotus floridanus]
          Length = 692

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           VE    R+ + D+    N +        L+ V TK+ A+ L EYL      V  +H +  
Sbjct: 447 VEEHDKRSYLLDLLQASNFSDPSAESLTLVFVETKKGADMLEEYLATMGYPVTSIHGDRT 506

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER E +R  R GK  +LV   +   GLDIP    V   D             +  IGR
Sbjct: 507 QREREEALRRFRAGKAPILVATAVAARGLDIPHVKHVINFD-----LPGDVEEYVHRIGR 561

Query: 678 AARNVNSK 685
             R  N  
Sbjct: 562 TGRMGNLG 569


>gi|145524966|ref|XP_001448305.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415849|emb|CAK80908.1| unnamed protein product [Paramecium tetraurelia]
          Length = 475

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 95/282 (33%), Gaps = 38/282 (13%)

Query: 426 ITYDLEMLETTGSCQSIENYSRYL----TGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
             YDL  ++T      I+   +Y     T +     P  L ++I +D L        +I 
Sbjct: 190 TQYDL-FVKTCCLFGGIQKPLQYFAKPQTPKVIIATPGRLLDFI-KDGL-----PLKSIT 242

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           Q+             + + GF          L+    +     T+  SAT          
Sbjct: 243 QVV------LDEADRMLDMGFE---DQIRDVLKEVRKDR---QTLFFSATWPKEVQRLAN 290

Query: 542 GIIVEQII------RPTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +  E  +      R   +     +  I S   + E + +  N    +  ++L+    K 
Sbjct: 291 NLCNEDPVFLQLGERGLSVNKNITQSLIISGGNKFEQLIEYFNQIKDK--KVLVFCQKKI 348

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             + L   L +  I  RY+H +++  +R  I+++ R G    L+  NL   GLD+ +  +
Sbjct: 349 DTQKLEYKLSQHGINARYLHGDLRQNQRDFIMQEFRDGSAKCLITTNLASRGLDVSDVDI 408

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           V   D     F  +    I  IGR  R       L       
Sbjct: 409 VINYD-----FPENIEDYIHRIGRTGRAGKKGEALSFIEPND 445


>gi|328779178|ref|XP_623193.3| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Apis
           mellifera]
          Length = 588

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 74/187 (39%), Gaps = 20/187 (10%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++  + ++ V TKR  +D+T  +     +   +H +    ER  ++++ + G+  +LV  
Sbjct: 358 EKENKTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQERDHVLQEFKSGRAPILVAT 417

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   GLD+ +   V   D     +  S    I  IGR  R   +    YA   + +++ 
Sbjct: 418 DVAARGLDVDDVKYVINFD-----YPSSSEDYIHRIGRTGRRRQTGTA-YAFFTSHNMKH 471

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
           A D        ++      NINP+        + +   L  + T       + ++  +  
Sbjct: 472 AGD------LIEVLREAGQNINPR--------LTEMAELAKSGTYGSRSGKRFITNDRSN 517

Query: 760 GKAHLKS 766
           G+  +  
Sbjct: 518 GRRGISD 524


>gi|167515852|ref|XP_001742267.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778891|gb|EDQ92505.1| predicted protein [Monosiga brevicollis MX1]
          Length = 591

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 91/254 (35%), Gaps = 27/254 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII---------RPTGLVDPPVEIRSARTQVEDVY 572
           +P  I+ SAT   + L   +  +   +          R +  VD          +   + 
Sbjct: 179 KPQMILFSATMPDFILSTVKNYMPNHVTVDTVGSSRNRTSKGVDHLAIKCPWTERRAVIA 238

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+ A +L     +    V+ +H ++   +R   ++  R GK
Sbjct: 239 DVVQMYSGAHGRTIIFTQTKKDANELALE-TDLRQEVQVLHGDIPQKQREMSLQAFRDGK 297

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
              LV  ++   GLDIPE  LV   +  K+       S I   GR  R   +   +    
Sbjct: 298 VRCLVATDVAARGLDIPEVDLVVQCEPPKDV-----ESYIHRSGRTGRAGRTGTCICFYK 352

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  + A+    RR            I+ + +     E +      DA  +  +I+   
Sbjct: 353 PNQ--EDAMRYVERR----------AGISFRRIGAPQPEDVIKASARDAFRSLEAINDSV 400

Query: 753 LSLSKKKGKAHLKS 766
           L+  K   +  ++ 
Sbjct: 401 LAHFKDAARELIEE 414


>gi|46124853|ref|XP_386980.1| hypothetical protein FG06804.1 [Gibberella zeae PH-1]
 gi|91206556|sp|Q4I7K4|DED1_GIBZE RecName: Full=ATP-dependent RNA helicase DED1
          Length = 675

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ L+++L  +N     +H +    ER   +   R G+  +LV   +   
Sbjct: 448 TLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEFFRNGRCPILVATAVAAR 507

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 508 GLDIPHVTHVINYD-----LPTDVDDYVHRIGRTGRAGNTGIAT 546


>gi|6137207|gb|AAF04377.1|AF188678_1 P72 DEAD box protein [Pisum sativum]
          Length = 716

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 68/183 (37%), Gaps = 14/183 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           R  T++ +AT      +    ++V  +    G VD  V  +S    +E +         +
Sbjct: 329 RRQTLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAHMEKQRRLE 388

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I  +  QG +I++   TK+M + L   L  R      +  +    +R  ++   R G+ 
Sbjct: 389 SILQSQDQGSKIIIFCSTKKMCDQLARNLT-RQFGAAAIRGDKSQADRDHVLNQFRSGRT 447

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VLV  ++   GLD+ +  +V         F       +  IGR  R   + +       
Sbjct: 448 PVLVATDVAARGLDVKDIRVVVNY-----TFPTGVEDYLHRIGRTGRAGATGIAYTFFGD 502

Query: 694 TKS 696
             +
Sbjct: 503 QDA 505


>gi|254236843|ref|ZP_04930166.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
 gi|126168774|gb|EAZ54285.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
          Length = 449

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 99/284 (34%), Gaps = 46/284 (16%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +           ++ V   Q+  +   +  R     + GF      +   L   
Sbjct: 131 TPGRLLD--------LYRQNAVKFAQLQALVLDEADRM---LDLGF----ARELDELFAA 175

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
                +  T++ SAT             +  + R        +E+    T  + V   + 
Sbjct: 176 L--PRKRQTLLFSAT---------FSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLV 224

Query: 577 LAAQQG--------------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
              ++                + L+   T++  E+L   L  + I    +H +     R+
Sbjct: 225 PVDKKRKVELFCHLLQANRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARL 284

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             ++  + G+ D++V  ++   GLDI E  LV   D             I   GRA  + 
Sbjct: 285 RALQRFKAGEVDLMVATDVAARGLDIEEMPLVVNFDLPIV--AEDYVHRIGRTGRAGASG 342

Query: 683 NSKVILYADTIT--KSIQLAIDETTRRREKQLEHNKKHNINPQS 724
            +  ++ AD +    +I+  I +T +RRE + +   +H   PQ+
Sbjct: 343 QAVSLVCADEVELLAAIETLIGQTLQRRE-EPDFEPEHR-VPQT 384


>gi|325983359|ref|YP_004295761.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325532878|gb|ADZ27599.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
          Length = 457

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 85/215 (39%), Gaps = 31/215 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT     L+     +  ++++        +++ S +++++++   ++ A     
Sbjct: 181 QTLLFSAT-----LDNAIDRVAAKLLKTPQR----IQVSSPKSKLDNIEQRLHYADDMSH 231

Query: 584 R---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +                ++   TKR A+ L + LY +      +H ++   ER   +  L
Sbjct: 232 KNRLLDHVLRDETLKQAIVFTATKRDADSLADTLYAQGYAAAALHGDMNQRERNRTLTRL 291

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G   VLV  ++   G+D+ +   V   D  K          +  IGR  R   + + +
Sbjct: 292 RNGGLRVLVATDVAARGIDVADITHVINFDLPKF-----AEDYVHRIGRTGRAGAAGIAV 346

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
              ++  S+   + +  R   +++  +    + P+
Sbjct: 347 SFASVKDSMH--LTKIERYTGQRIASHTIPGLEPR 379


>gi|90071180|emb|CAJ65832.1| putative transcription repair-coupling factor [uncultured
           Porphyromonadaceae bacterium]
          Length = 1053

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 61/179 (34%), Gaps = 15/179 (8%)

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSA 262
              A  LYS+        A   F S Y          + D    +E + +     +R   
Sbjct: 1   MDEAGYLYSDLCQILGEQAALLFPSGY----------KRDIKYGQEDAPS---QILRAEV 47

Query: 263 TRSLLERNDCIVVSSVSCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
                +    +VV+    +   +   +      +  + G + +       L    +   D
Sbjct: 48  LSRWDDPQLRVVVTYPEALAEKVAMRQQLIDSTLSFRRGGTADLTTTAQRLRDFGFVTVD 107

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
                G F V G  ++IF S   +  +R+  FG+DIE I  F   T    R+V+ I + 
Sbjct: 108 YVYEPGQFAVRGSILDIF-SFTNEQPYRIDFFGDDIESIRTFNIETQLSERSVDEITVV 165



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 11/192 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G      I        P+         E + + IN    +G 
Sbjct: 642 TLTMSATPIPRTLQFSLMGARDLSAINTPPRNRYPIITNVTALDDEILREAINFELARGG 701

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++ +         DL   +       R +  H ++ + +  + I D    ++DVL+   +
Sbjct: 702 QVFIVNNRIEQLFDLESRVRRLVPDARTVVGHGQMASDKLEQTIIDFAAHQYDVLLATTI 761

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+D+P    + I +A   G       L Q  GR  R+ N K   Y     ++   A+
Sbjct: 762 IESGIDMPNVNTIIINNAQNFGLSE----LHQLRGRVGRS-NRKAFCYLLVPPEA---AL 813

Query: 702 DETTRRREKQLE 713
               RRR + +E
Sbjct: 814 TPVARRRLQAIE 825


>gi|27367036|ref|NP_762563.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6]
 gi|27358604|gb|AAO07553.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6]
          Length = 509

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 74/199 (37%), Gaps = 20/199 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT      E  +G++   +E  + P       VE  I  A   V+     + 
Sbjct: 178 KRQNLLFSATFSDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYPAD--VKKKPAMLA 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              + G   ++L+   TK  A  L  +L ++ +    +H       R + + D + G+  
Sbjct: 236 KLIKDGDWQQVLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTI 693
           VLV  ++   G+DIP+   V   +  K          +  IGR  R   + K I     +
Sbjct: 296 VLVATDIAARGIDIPQLPQVVNFELPKV-----AEDYVHRIGRTGRAGETGKAISLVCAL 350

Query: 694 TKSIQLAIDETTRRREKQL 712
                 AI+     R  Q 
Sbjct: 351 EAPELFAIE-----RLIQE 364


>gi|118578871|ref|YP_900121.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118501581|gb|ABK98063.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 454

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 92/246 (37%), Gaps = 17/246 (6%)

Query: 524 TTIVVSATPGSWELEQCQGII-----VEQIIRP--TGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ +AT G+  L+  + ++     +E  +R     L++  + +       +++   + 
Sbjct: 180 QTLMFTATMGTTVLKLAEKMLRNPQRIELAVRTSSHELIEQRLHVADNLGHKKELLRHLV 239

Query: 577 LAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +GL R ++   TKR A++L   L         +H ++    R + I  +R G   +
Sbjct: 240 S--DKGLTRAIIFSATKRDADELARELSREGHPAAPLHGDMNQFARNKTIERMRKGAIRL 297

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLD+     V   D  +          +  IGR  R   S + +   + ++
Sbjct: 298 LVATDVAARGLDVNGISHVINFDLPRF-----AEDYVHRIGRTGRAGASGIAISFVSPSE 352

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
                ++   R   K+L       + P SV  ++     P   +            +   
Sbjct: 353 LSY--LERIERFIGKKLPEQNIEGLAPLSVLRRVSGGGAPGKRKSPGGGRYGKTGFKGKA 410

Query: 756 SKKKGK 761
           S  +GK
Sbjct: 411 SGAQGK 416


>gi|213406593|ref|XP_002174068.1| ATP-dependent RNA helicase, eIF4A related [Schizosaccharomyces
           japonicus yFS275]
 gi|212002115|gb|EEB07775.1| ATP-dependent RNA helicase, eIF4A related [Schizosaccharomyces
           japonicus yFS275]
          Length = 394

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 84/211 (39%), Gaps = 27/211 (12%)

Query: 510 NRPLRFEEWNCLR-----PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVD 556
           NR  + + ++  R        +VVSAT     LE       + +        +   GL  
Sbjct: 177 NRGFKDQIYDIYRYLPPGTQVVVVSATLPQDVLELTNKFTTDPVRILVKRDELTLEGLKQ 236

Query: 557 PPVEIRSARTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
             + +     + +   D+YD + +      + ++   ++R  + L E + E N  V  MH
Sbjct: 237 YFIAVEKEEWKFDTLCDLYDTLTIT-----QAVIFCNSRRKVDWLAEKMREANFTVTSMH 291

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            E+   ER  I+++ R G   VL+  ++   G+D+ +  LV   D        ++ + I 
Sbjct: 292 GEMPQKERDAIMQEFRQGHSRVLLCTDIWARGIDVQQVSLVINYD-----LPSNRENYIH 346

Query: 674 TIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
            IGR+ R     V I +       I   I++
Sbjct: 347 RIGRSGRFGRKGVAINFVTNDDVRILRDIEQ 377


>gi|193214029|ref|YP_001995228.1| DEAD/DEAH box helicase domain-containing protein [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087506|gb|ACF12781.1| DEAD/DEAH box helicase domain protein [Chloroherpeton thalassium
           ATCC 35110]
          Length = 431

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 85/261 (32%), Gaps = 46/261 (17%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   +  +         + QI      +  R     + GF      D R  R E
Sbjct: 133 TPGRLIDLFDQGFI--------GLDQIQTFVLDEADRM---LDMGFI----DDIR--RIE 175

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
                   T++ SAT    E+E     ++ + +R        +E+    +  +++  ++ 
Sbjct: 176 SLQPRDHQTLLFSATLSP-EIEALASRMLREPVR--------IEVAPVSSVADNITQKVL 226

Query: 577 LAAQQGLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
              Q   R               L+   TK+ A  + E L    I    +HS      R 
Sbjct: 227 FVEQNNKRELLHNLFKENDIKRALVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQ 286

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             +     GK +VLV  ++   G+D+     V   +           + +  IGR AR  
Sbjct: 287 RALMLFDRGKINVLVATDIAARGIDVDGISHVINYE-----LPDDPENYVHRIGRTARAG 341

Query: 683 NSK-VILYADTITKSIQLAID 702
            S   + + D     +   I+
Sbjct: 342 ASGTALSFCDADEVRMLKGIE 362


>gi|121706879|ref|XP_001271659.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus clavatus
           NRRL 1]
 gi|134034088|sp|A1CH78|DED1_ASPCL RecName: Full=ATP-dependent RNA helicase ded1
 gi|119399807|gb|EAW10233.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus clavatus
           NRRL 1]
          Length = 681

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 68/188 (36%), Gaps = 12/188 (6%)

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           G  +PS  + + L F          +          L+    + V ++   +  +   VE
Sbjct: 377 GEDMPSVNERQTLMFSATFPRDIQMLARDF------LKDYVFLSVGRVGSTSENITQKVE 430

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
                 +   + D ++     GL  L+ V TKRMA+ L+++L  +      +H +    E
Sbjct: 431 YVEDVDKRSVLLDILHTHGTSGL-TLIFVETKRMADALSDFLINQRFPATAIHGDRTQRE 489

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R   +   R  +  +LV   +   GLDIP    V   D             +  IGR  R
Sbjct: 490 RERALEMFRSARCPILVATAVAARGLDIPNVTHVINYD-----LPTDIDDYVHRIGRTGR 544

Query: 681 NVNSKVIL 688
             N+ +  
Sbjct: 545 AGNTGIAT 552


>gi|297579675|ref|ZP_06941602.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
 gi|297535321|gb|EFH74155.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
          Length = 464

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 15/190 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +G++   VE  + P       VE  I  A   V+     + 
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD--VKKKPAMLV 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++G   ++L+ + TK  A  L  YL E+ +    +H       R   + D + G+  
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +LV  ++   G+DIP+   V   +  K          +  IGR  R     K I     I
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKI-----AEDYVHRIGRTGRAGEVGKAISLVSAI 350

Query: 694 TKSIQLAIDE 703
                 AI+ 
Sbjct: 351 EAPELFAIER 360


>gi|224073176|ref|XP_002304009.1| predicted protein [Populus trichocarpa]
 gi|222841441|gb|EEE78988.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 71/194 (36%), Gaps = 20/194 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT    E+++     +   I          T L+   VE      +   + D +
Sbjct: 152 QTMLFSAT-FPKEIQRLASDFLSTYIFLAVGRVGSSTDLIVQRVEFVYEPDKRSHLMDLL 210

Query: 576 NLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +     G++      L+ V TK+ A+ L  +L         +H +    ER + +R  + 
Sbjct: 211 HAQRANGVQGKQALTLVFVETKKGADSLEHWLCINGFPATSIHGDRSQQEREQALRSFKT 270

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G   +LV  ++   GLDIP    V   D             +  IGR  R  NS     +
Sbjct: 271 GNTPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGNSGLATAF 325

Query: 690 ADTITKSIQLAIDE 703
            +    S+   + E
Sbjct: 326 FNEGNASMARPLSE 339


>gi|332028827|gb|EGI68856.1| ATP-dependent RNA helicase bel [Acromyrmex echinatior]
          Length = 704

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           VE    R+ + D+    N +        L+ V TK+ A+ L EYL      V  +H +  
Sbjct: 452 VEEHDKRSYLLDLLQASNFSDPTAESLTLVFVETKKGADMLEEYLASMGYPVTSIHGDRT 511

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER E +R  R GK  +LV   +   GLDIP    V   D             +  IGR
Sbjct: 512 QREREEALRRFRAGKAPILVATAVAARGLDIPHVKHVINFD-----LPGDVEEYVHRIGR 566

Query: 678 AARNVNSK 685
             R  N  
Sbjct: 567 TGRMGNLG 574


>gi|271961946|ref|YP_003336142.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
 gi|270505121|gb|ACZ83399.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
          Length = 561

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   T+   + LTE L  R  R   +H  +   +R  ++  LR G  D+LV  ++   
Sbjct: 256 AIVFCRTRDEVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRLRTGTADLLVATDVAAR 315

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           GLDI +   V   D        +  S +  IGR  R     V I  A+     +   I+ 
Sbjct: 316 GLDIEQLTHVVNYDV-----PSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIER 370

Query: 704 TTRRR 708
            T+RR
Sbjct: 371 VTKRR 375


>gi|148228442|ref|NP_001082679.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Xenopus laevis]
 gi|51704021|gb|AAH80992.1| LOC398649 protein [Xenopus laevis]
          Length = 610

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 73/188 (38%), Gaps = 21/188 (11%)

Query: 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
            LE      + QI+      +          ++  + +EI   A++  + ++ V TKR  
Sbjct: 292 NLELSANHNILQIVDVCQESEK-------DHKLIQLMEEIM--AEKENKTIIFVETKRRC 342

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + R GK  +L+  ++   GLD+ +   V 
Sbjct: 343 DELTRRMRRDGWPAMCIHGDKSQQERDWVLCEFRTGKAPILIATDVASRGLDVEDIKFVI 402

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
             D     +  S    +  IGR AR+ N        T   +++ A      R   ++   
Sbjct: 403 NYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLKQA------RELVKVLEE 450

Query: 716 KKHNINPQ 723
               INP+
Sbjct: 451 ANQTINPK 458


>gi|328470415|gb|EGF41326.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus 10329]
          Length = 643

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 74/204 (36%), Gaps = 30/204 (14%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-DPILLEDAATTNISIDAQQLSLS 756
              I+  T                 +S  E+I   + D +           ++A++   +
Sbjct: 357 LRTIERVT-----------------KSSMEEIQLPLRDQVAEARLNKLAAELEAEKEHKA 399

Query: 757 KKKGKAHLKSLRK------QMHLA 774
             K    ++ L+        M  A
Sbjct: 400 LDKFAELVEKLQTSLEIDPAMLAA 423


>gi|303231880|ref|ZP_07318591.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513487|gb|EFL55518.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 523

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 9/191 (4%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEI--NL 577
             T++ SAT      E  +  + E  +   +PT +    +E      Q    +D +    
Sbjct: 177 HQTLLFSATMPKTIRELAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLF 236

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  +++TE L +R      +H ++   +R  +IR  R G  D+LV
Sbjct: 237 DLQAPELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILV 296

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D  ++    S T  +   GRA +   +    +        
Sbjct: 297 ATDVAARGLDISGVSHVYNYDLPQD--PESYTHRVGRTGRAGKAGEAY--TFVIPREIEH 352

Query: 698 QLAIDETTRRR 708
             AI+  T+R+
Sbjct: 353 LHAIERLTKRK 363


>gi|292657118|ref|YP_003537015.1| ATP-dependent RNA helicase/nuclease Hef [Haloferax volcanii DS2]
 gi|291371263|gb|ADE03490.1| ATP-dependent RNA helicase/nuclease Hef [Haloferax volcanii DS2]
          Length = 858

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 16/147 (10%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-------HSEVKTLERIEIIRDLRLG 631
            Q G R+++   ++  AE LTE+L E     R++          +   E+ E +   R G
Sbjct: 368 IQNGERVIVFTESRDTAEALTEFLSESFSVRRFVGQGDREGSDGMTQNEQQETLDKFRNG 427

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YA 690
           +F+VLV  ++  EGLD+PE  LV   +      + +    IQ  GR  R  + +V++  A
Sbjct: 428 EFEVLVSTSVAEEGLDVPEVDLVLFFEP-----VPTAIRSIQRKGRTGRQADGRVVVLLA 482

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKK 717
           +         I   +RRREK +++  +
Sbjct: 483 EDTRDEAYFWI---SRRREKTMQNELR 506


>gi|256077147|ref|XP_002574869.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238660085|emb|CAZ31102.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 401

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 21/184 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              +++SAT     LE     +   +        +   G+    V +     + +   D+
Sbjct: 202 TQVVLLSATMPHEILEMTSKFMTNPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 261

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TKR    LTE + + N  V  MH ++   ER EI++D R G
Sbjct: 262 YDTLTVT-----QSVIFCNTKRKVAWLTEKMLKNNFTVASMHGDMVQKEREEIMKDFRAG 316

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
              VL+  +L   G+D+ +  LV   D        ++   I  IGR+ R     V +   
Sbjct: 317 DSRVLITTDLWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFV 371

Query: 692 TITK 695
               
Sbjct: 372 KTDD 375


>gi|194205947|ref|XP_001917975.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Equus caballus]
          Length = 785

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 99/254 (38%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSAT------PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVY- 572
           P T++ SAT        + +  +     V+ I + T      VE   I+   TQ   V  
Sbjct: 371 PQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAMTVEHLAIKCHWTQRAAVIG 430

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++      +  + +H ++   +R   ++  R G 
Sbjct: 431 DVIRVYSGYQRRTIIFCETKKEAQELSQS-VSIKLDAQSLHGDIPQKQREITLKGFRNGD 489

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + + +    
Sbjct: 490 FGVLVATNVAARGLDIPEVDLVIQSSPPKDV-----ESYIHRSGRTGRAGRTGICICFYQ 544

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QLA          Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 545 HKEEHQLA----------QVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 592

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 593 ISHFKQSAEKLIEE 606


>gi|23501930|ref|NP_698057.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
 gi|23347874|gb|AAN29972.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
           1330]
          Length = 535

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 232 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 281

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 282 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 341

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 342 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 401

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 402 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 451


>gi|45709504|gb|AAH67585.1| Ddx5 protein [Danio rerio]
          Length = 496

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 82/212 (38%), Gaps = 21/212 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-----PPVEIRSA--RTQVEDVYDEIN 576
            T++ SAT      +  +  + E I    G +        ++I       + ED    + 
Sbjct: 276 QTLMWSATWPKEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRLL 335

Query: 577 LAA--QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                ++  + ++ V TKR  +DLT  +         +H +    ER  ++ + + GK  
Sbjct: 336 EEIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAP 395

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+  ++   GLD+ +   V   D     +  +    I  IGR AR+  +       T  
Sbjct: 396 ILIATDVASRGLDVEDVKFVINFD-----YPNNSEDYIHRIGRTARSQKTGTAYTFFTPN 450

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
            +++ A D  +  RE          INP+ ++
Sbjct: 451 -NMKQAHDLVSVLREANQA------INPKLIQ 475


>gi|302818865|ref|XP_002991105.1| hypothetical protein SELMODRAFT_132834 [Selaginella moellendorffii]
 gi|300141199|gb|EFJ07913.1| hypothetical protein SELMODRAFT_132834 [Selaginella moellendorffii]
          Length = 601

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      ++    F+ +   R  T++ SAT         +  +V+ ++   G  
Sbjct: 323 RLIDLGFE-----EDIREVFDHFKAQR-QTLLFSATMPKKIQNFAKSALVKPVVVNVGRA 376

Query: 555 ----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + Q   +   +    +    +L+    K   +D+ EYL  + +   
Sbjct: 377 GAANLDVIQEVEYVK-QEAKIVYLLECLQKTPPPVLIFCENKSDVDDIHEYLLVKGVGAV 435

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER   I   + GK DVLV  ++  +GLD P+   V   D   E  + +   
Sbjct: 436 AIHGGKDQEEREYAIASFKQGKKDVLVATDIASKGLDFPDIQHVINYDMPAE--IENYVH 493

Query: 671 LIQTIGRAARNVNSKVI---LYADTITKSIQLAIDETTRR 707
            I   GR  +   +        ++TI   ++  + E  +R
Sbjct: 494 RIGRTGRCGKTGIATSFINKNQSETILLDLKHLLKEARQR 533


>gi|298505039|gb|ADI83762.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
          Length = 446

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 88/236 (37%), Gaps = 22/236 (9%)

Query: 490 DFHRKATLA--------EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           D  R   L         + GF LP     R L+       R  T++ SAT         Q
Sbjct: 141 DLSRLEVLVLDEADQMFDMGF-LPDI--RRVLKHLP---SRRQTLLFSATMPIDIRALAQ 194

Query: 542 GIIVEQIIRPTGLVDPPVEI----RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
            I+V+ +    G V P V +          ++       L       +L+   TK  A+ 
Sbjct: 195 EILVDPVTVQVGNVAPAVTVAHALYPVEQHLKTPLLLELLRHTDTESVLIFTRTKHRAKR 254

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L E L +   R   +   +    R   +   R G + +LV  ++   G+D+ +   V   
Sbjct: 255 LGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTYQILVATDIAARGIDVSQVSHVINY 314

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT--ITKSIQLAIDETTRRREKQ 711
           D        +    I   GRAAR+ ++  ++ +D   + +SI+ ++  T  RR  Q
Sbjct: 315 DIPDT--AEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRSIERSLGATIERRTVQ 368


>gi|134076811|emb|CAK39865.1| unnamed protein product [Aspergillus niger]
          Length = 1191

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 89/263 (33%), Gaps = 34/263 (12%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     +E ++    +V P +    E+R+   +   + + + 
Sbjct: 741 QTVLFSATFPRNMEALARKTLTKPIEIVVGGKSVVAPEITQIVEVRNDDQKFVRLLELLG 800

Query: 577 LAAQQGL----RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 801 NLYSSDENEDARALIFVDRQEAADALLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGI 860

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VL+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 861 FPVLIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 913

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K      P+ V++ +   ++ +       +      
Sbjct: 914 --------LTEDQERYSVDIAKALKQSGQKVPEPVQKLVDAFLEKVKAGKEKASASGFGG 965

Query: 751 QQLSLSKKKGKAHLKSLRKQMHL 773
           + L    ++  A       +M  
Sbjct: 966 KGLERLDQERDA------ARMRE 982


>gi|14211584|dbj|BAB56110.1| vasa short form [Oreochromis niloticus]
          Length = 621

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E + D +        R ++ V TKR A+ +   L +       +H + +  +R + + D 
Sbjct: 424 EQLIDLLKSTGS--ERTMVFVETKRQADFIATILCQEKFPTTSIHGDREQWQREQALGDF 481

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           R GK  VLV  ++   GLDIP+   V   D        +    +  IGR  R  N+   +
Sbjct: 482 RSGKCSVLVATSVGARGLDIPDVQFVVNFD-----LPNNIDEYVHRIGRTGRCGNTGRAV 536

Query: 688 LYADTITKS 696
            + D    S
Sbjct: 537 SFYDPGADS 545


>gi|11990882|dbj|BAB19807.1| vasa [Oreochromis niloticus]
          Length = 645

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E + D +        R ++ V TKR A+ +   L +       +H + +  +R + + D 
Sbjct: 448 EQLIDLLKSTGS--ERTMVFVETKRQADFIATILCQEKFPTTSIHGDREQWQREQALGDF 505

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           R GK  VLV  ++   GLDIP+   V   D        +    +  IGR  R  N+   +
Sbjct: 506 RSGKCSVLVATSVGARGLDIPDVQFVVNFD-----LPNNIDEYVHRIGRTGRCGNTGRAV 560

Query: 688 LYADTITKS 696
            + D    S
Sbjct: 561 SFYDPGADS 569


>gi|322705100|gb|EFY96688.1| ATP-dependent RNA helicase dbp3 [Metarhizium anisopliae ARSEF 23]
          Length = 596

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 5/168 (2%)

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
           V  T GS   E   G +  Q           V+ +    ++  +  +     Q+  RIL+
Sbjct: 378 VKITIGSGGKETENGSVELQANTRISQKVEVVDPKDKEFRLLQILKQHQQGKQKNDRILV 437

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
             L K+ A  +  +L  + IRV  +H ++K  +R   +   + G+  VLV  ++   GLD
Sbjct: 438 FCLYKKEATRVENFLSRKGIRVGGIHGDLKQEQRTRSLEAFKTGQTPVLVATDVAARGLD 497

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           IPE  LV  +      F  +    +  IGR  R   +       T+  
Sbjct: 498 IPEVKLVINV-----TFPLTIEDYVHRIGRTGRAGKTGEAHTLFTVQD 540


>gi|145353098|ref|XP_001420866.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581101|gb|ABO99159.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 404

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 23/202 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              ++VSAT  +  LE     + + +        +   G+    V +     + +   D+
Sbjct: 205 TQVVLVSATLPNEVLEMTSKFMTDPMRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 264

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TK+  + LTE + + N  V  MH ++   ER EI+ + R G
Sbjct: 265 YDTLTIT-----QAVIFCNTKKKVDWLTEKMRQNNFTVSAMHGDMPQKEREEIMNEFRGG 319

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
              VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +   
Sbjct: 320 TTRVLITTDVWARGIDVQQVSLVINYD-----LPGNRENYIHRIGRSGRYGRKGVAINFV 374

Query: 692 TITKSIQLAIDETTRRREKQLE 713
                   A+ +  +    Q++
Sbjct: 375 KADDV--RALRDIEQYYSTQID 394


>gi|302695009|ref|XP_003037183.1| hypothetical protein SCHCODRAFT_47730 [Schizophyllum commune H4-8]
 gi|300110880|gb|EFJ02281.1| hypothetical protein SCHCODRAFT_47730 [Schizophyllum commune H4-8]
          Length = 518

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 12/132 (9%)

Query: 568 VEDVYDEIN-LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           V D+  +     A +    L+  ++    E LT+      +  RY++S     ER E+I 
Sbjct: 267 VNDLVVKTWLHRAAKRKSTLVFCVSIAHVESLTQAFRSYGVDARYVYSGTPAAERRELIA 326

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR------ 680
             R G+F VL+   +L EG DIP    V +    +     S+    Q IGR  R      
Sbjct: 327 QFRAGEFPVLINCAILTEGADIPNIDCVVVARPTR-----SRNVFAQMIGRGMRLSPSTG 381

Query: 681 NVNSKVILYADT 692
             +  +I + DT
Sbjct: 382 KTDCHIIDFVDT 393


>gi|294886917|ref|XP_002771918.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239875718|gb|EER03734.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 521

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 2/124 (1%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D   ++      G ++L+   TKR A+DLT  L         +H + K  ER  ++ + +
Sbjct: 350 DRLKQLLERVMDGSKLLIFTDTKRGADDLTRTLRMDGWPALCIHGDKKQEERDWVLHEFK 409

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GK  +++  ++   GLD+ +   V   D    G +      I   GRA    N+     
Sbjct: 410 SGKSPIMIATDVASRGLDVKDIRHVVNYDFP--GQIEDYVHRIGRTGRAGCKGNAYTFFT 467

Query: 690 ADTI 693
           AD I
Sbjct: 468 ADKI 471


>gi|218885389|ref|YP_002434710.1| transcription-repair coupling factor [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756343|gb|ACL07242.1| transcription-repair coupling factor [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1197

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 69/164 (42%), Gaps = 11/164 (6%)

Query: 259 RHSATRSLLERND--CIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
           R ++  +L  R     I++S  + +  +  V+ +    ++L  G+ +  + +L   +   
Sbjct: 125 RMASLYALSRREHPRGIIISVDNLLPKLPPVDIFEHHELRLARGEDMSPELVLDQAIDWG 184

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           ++R  +    G     GD ++IFP   E    R+  FG+ +E+I  F   + + + ++E 
Sbjct: 185 FERAQMVSRPGEAARRGDILDIFPPGYE-KPLRLEFFGDTLEDIRLFDATSQRSLASLEE 243

Query: 377 IKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQ 420
            ++   +  V  R     A          R  +L K+G +   Q
Sbjct: 244 FRLLPVAPVVGCREYREAA--------ARRWKQLRKDGVIDGEQ 279



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 11/186 (5%)

Query: 528 VSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
           ++ATP    L+     I E  +I        PV           +   +     +  ++ 
Sbjct: 793 LTATPIPRTLQLSMSGIRELSVIETAPPERKPVATALIERDQNALRQILEREIAREGQVF 852

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
                 +  E + E++       R    H ++   E  + +     G+ DVLV   ++  
Sbjct: 853 WVHNRVQGLERVAEFVRGLVPTARVGMAHGQMGERELEDTMHKFWHGELDVLVCTAIVES 912

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    + +  A   G  +    L Q  GR  R+      ++  +  +     + E 
Sbjct: 913 GLDFPRANTLIVDQAQMFGLGQ----LYQLRGRVGRSDRQAYAVFVVSDAER----LPEQ 964

Query: 705 TRRREK 710
            R+R +
Sbjct: 965 ARQRMR 970


>gi|223590230|sp|A5DQS0|DED1_PICGU RecName: Full=ATP-dependent RNA helicase DED1
          Length = 637

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TKRMA++L ++LY++      +H +    ER + +   + G   +LV   +   
Sbjct: 429 TIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGTAPILVATAVAAR 488

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GLDIP    V   D             +  IGR  R  N  +  
Sbjct: 489 GLDIPNVSHVVNYD-----LPGDIDDYVHRIGRTGRAGNVGIAT 527


>gi|190348962|gb|EDK41523.2| hypothetical protein PGUG_05621 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 666

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TKRMA++L ++LY++      +H +    ER + +   + G   +LV   +   
Sbjct: 458 TIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGTAPILVATAVAAR 517

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GLDIP    V   D             +  IGR  R  N  +  
Sbjct: 518 GLDIPNVSHVVNYD-----LPGDIDDYVHRIGRTGRAGNVGIAT 556


>gi|170690407|ref|ZP_02881574.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170144842|gb|EDT13003.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 481

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 82/244 (33%), Gaps = 17/244 (6%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLA 578
            T++ SAT          GI+   V+  + P       +   +     + +       +A
Sbjct: 181 QTLLFSATFTDDIRALAAGILRGPVDISVSPPNATASKIRQWVVPVDKRNKPDLFMHLVA 240

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                  L+ V T+   + L   L E    V  +H +     R+  +   + G+ ++LV 
Sbjct: 241 QNNWEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARMRALERFKTGEVNMLVA 300

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   GLDI +  LV  +D             +  IGR  R   S V +          
Sbjct: 301 TDVAARGLDIDDLPLVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADEAPQ 355

Query: 698 QLAIDETTR---RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
             AI+   R   RRE++     +H   PQ+    + E I             +       
Sbjct: 356 LAAIEALIRQTLRREEEPGFEAEHR-VPQT--SAMGETIKKPKKPKKPKAPQAAPGASQL 412

Query: 755 LSKK 758
            SKK
Sbjct: 413 TSKK 416


>gi|146413260|ref|XP_001482601.1| hypothetical protein PGUG_05621 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 666

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TKRMA++L ++LY++      +H +    ER + +   + G   +LV   +   
Sbjct: 458 TIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGTAPILVATAVAAR 517

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GLDIP    V   D             +  IGR  R  N  +  
Sbjct: 518 GLDIPNVSHVVNYD-----LPGDIDDYVHRIGRTGRAGNVGIAT 556


>gi|59713567|ref|YP_206342.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59481815|gb|AAW87454.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 634

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++   +R   + +++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS-I 697
            +++  GLD+P    V   D   +       S I  IGR  R       +      +  +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQMRM 356

Query: 698 QLAIDETTR 706
              I+  T+
Sbjct: 357 LRTIERVTK 365


>gi|258624900|ref|ZP_05719828.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|258582898|gb|EEW07719.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
          Length = 451

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 15/190 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +G++   VE  + P       VE  I  A   V+     + 
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD--VKKKPAMLV 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++G   ++L+ + TK  A  L  YL E+ +    +H       R   + D + G+  
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +LV  ++   G+DIP+   V   +  K          +  IGR  R     K I     I
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKI-----AEDYVHRIGRTGRAGEVGKAISLVSAI 350

Query: 694 TKSIQLAIDE 703
                 AI+ 
Sbjct: 351 EAPELFAIER 360


>gi|229828479|ref|ZP_04454548.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
           14600]
 gi|229793073|gb|EEP29187.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
           14600]
          Length = 538

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 97/257 (37%), Gaps = 36/257 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCM---DNRPL 513
            P  L +++ +D    VD   ++  +I  +   D      + + GF LP      ++ P 
Sbjct: 188 TPGRLLDFMGQD---LVD---LSSVEILVLDEADR-----MLDMGF-LPDVSRIVESTPS 235

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP----VEIRSARTQVE 569
           +          T++ SAT    E+ Q    +++  ++     +      VE +   +  E
Sbjct: 236 K--------RQTLMFSAT-MEKEVRQLADRMLKDPVQVQVTPENEAADTVEQKLIFSSRE 286

Query: 570 DVYDEINL--AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D  + I      +     ++   TK  A+ L+  L  R I    +H +    +R + +  
Sbjct: 287 DKREIIASLLTDEAVESAIVFTRTKHGADKLSRELKRRGIESVAIHGDKTQGQRQDALNR 346

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV- 686
            + GK  V+V  ++   GLDIP+   V   D  +E       + I  IGR  R   S + 
Sbjct: 347 FKSGKVRVMVATDVAARGLDIPKLSHVFNYDVPEE-----AGAYIHRIGRTGRAGESGIA 401

Query: 687 ILYADTITKSIQLAIDE 703
           I             ++E
Sbjct: 402 ITLCCEAELDALREVEE 418


>gi|108742054|gb|AAI17661.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 23/197 (11%)

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
            V    G+ EL       + QI+      +          ++  + +EI   A++  + +
Sbjct: 298 YVQINIGALEL--SANHNILQIVDVCMENEK-------DNKLIQLMEEIM--AEKENKTI 346

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           + V TK+  ++LT  +         +H +    ER  ++ + R GK  +L+  ++   GL
Sbjct: 347 IFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGL 406

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           D+ +   V   D     +  S    +  IGR AR+ N        T   +++ A      
Sbjct: 407 DVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLRQA------ 454

Query: 707 RREKQLEHNKKHNINPQ 723
           R   ++    +  INP+
Sbjct: 455 RDLVRVLEEARQAINPK 471


>gi|159154994|gb|AAI54494.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 23/197 (11%)

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
            V    G+ EL       + QI+      +          ++  + +EI   A++  + +
Sbjct: 298 YVQINIGALEL--SANHNILQIVDVCMENEK-------DNKLIQLMEEIM--AEKENKTI 346

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           + V TK+  ++LT  +         +H +    ER  ++ + R GK  +L+  ++   GL
Sbjct: 347 IFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGL 406

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           D+ +   V   D     +  S    +  IGR AR+ N        T   +++ A      
Sbjct: 407 DVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLRQA------ 454

Query: 707 RREKQLEHNKKHNINPQ 723
           R   ++    +  INP+
Sbjct: 455 RDLVRVLEEARQAINPK 471


>gi|154308886|ref|XP_001553778.1| eukaryotic initiation factor 4A-12 [Botryotinia fuckeliana B05.10]
 gi|160385734|sp|A6S4N4|FAL1_BOTFB RecName: Full=ATP-dependent RNA helicase fal1
 gi|150852597|gb|EDN27789.1| eukaryotic initiation factor 4A-12 [Botryotinia fuckeliana B05.10]
          Length = 399

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 198 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCD 257

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 258 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 312

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 313 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPVNRENYIHRIGRSGRFGRKGVAINF 367

Query: 691 DTITK 695
            T   
Sbjct: 368 VTSED 372


>gi|119357571|ref|YP_912215.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354920|gb|ABL65791.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeobacteroides DSM
           266]
          Length = 589

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 6/157 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           IL+ V TK M  +L E L  R      ++ ++    R   +  L+ G  ++++  ++   
Sbjct: 251 ILIFVRTKTMTLELAEKLQARGYDASALNGDMAQNMRERTVEQLKSGALNIVIATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     K++  AI++
Sbjct: 311 GLDVDRISHVINYD-----IPSDTESYVHRIGRTGRAGRSGEAILFVSPREKNMLYAIEK 365

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
            TR+R + +E      IN + + +    + D I   +
Sbjct: 366 ATRKRIELMELPSTEIINNKRISKFKQRITDTIAAGE 402


>gi|295425677|ref|ZP_06818364.1| RNA helicase DeaD [Lactobacillus amylolyticus DSM 11664]
 gi|295064693|gb|EFG55614.1| RNA helicase DeaD [Lactobacillus amylolyticus DSM 11664]
          Length = 493

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 78/194 (40%), Gaps = 13/194 (6%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEI 575
           R  T++ SAT   P     E+         I+   L    ++   +R+  ++  D+   +
Sbjct: 175 RKQTLLFSATMPKPILQIGEKFMHDPEVVKIKAKELTADLIDQYFVRAKESEKFDIMCRL 234

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L  L+   TKR  ++LT  L  R      +H ++    R+ +++  R GK ++
Sbjct: 235 IDVQGPDL-ALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKQFRAGKLEI 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   + + + +     
Sbjct: 294 LVATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRTGRAGQNGISVTFVTPNE 348

Query: 695 KSIQLAIDETTRRR 708
            S    I++ T+++
Sbjct: 349 ISYMQTIEQLTKKK 362


>gi|163800381|ref|ZP_02194282.1| hypothetical protein 1103602000595_AND4_06859 [Vibrio sp. AND4]
 gi|159175824|gb|EDP60618.1| hypothetical protein AND4_06859 [Vibrio sp. AND4]
          Length = 619

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKKGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRINHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTR 706
              I+  T+
Sbjct: 357 LRTIERVTK 365


>gi|141796059|gb|AAI34864.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 23/197 (11%)

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
            V    G+ EL       + QI+      +          ++  + +EI   A++  + +
Sbjct: 298 YVQINIGALEL--SANHNILQIVDVCMENEK-------DNKLIQLMEEIM--AEKENKTI 346

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           + V TK+  ++LT  +         +H +    ER  ++ + R GK  +L+  ++   GL
Sbjct: 347 IFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGL 406

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           D+ +   V   D     +  S    +  IGR AR+ N        T   +++ A      
Sbjct: 407 DVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NLRQA------ 454

Query: 707 RREKQLEHNKKHNINPQ 723
           R   ++    +  INP+
Sbjct: 455 RDLVRVLEEARQAINPK 471


>gi|134085663|ref|NP_001076996.1| nucleolar RNA helicase 2 [Bos taurus]
 gi|133778115|gb|AAI23649.1| DDX21 protein [Bos taurus]
 gi|296472163|gb|DAA14278.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Bos taurus]
          Length = 784

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVY- 572
           P T++ SAT   W         +     V+ I + T      VE   I+   TQ   V  
Sbjct: 370 PQTLLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIG 429

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++         + +H ++   +R   ++  R G 
Sbjct: 430 DVIRVYSGFQGRTIIFCETKKEAQELSQ-NVAVRQDAQSLHGDIPQKQREITLKGFRNGD 488

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 489 FGVLVATNVAARGLDIPEVDLVVQSSPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 543

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QLA          Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 544 HKEEYQLA----------QVE--QKAGIKFKRIGVPSPTEIIKASSKDAIRLLDSVPPTA 591

Query: 753 LSLSKKKGKAHLKS 766
           +   K+  +  ++ 
Sbjct: 592 IGHFKQSAEKLIEE 605


>gi|313906550|ref|ZP_07839880.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens
           6]
 gi|313468619|gb|EFR63991.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens
           6]
          Length = 524

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 98/278 (35%), Gaps = 37/278 (13%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           L +Y+           ++ +  + G+          + + GF       N   +      
Sbjct: 131 LMDYM-----------NLGLVSLKGIEIFVLDEADRMLDMGFI------NDVRKIAGSMN 173

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEIN 576
               T++ SAT    E+EQ    ++       + P       V+ +       D    + 
Sbjct: 174 TDRQTLMFSAT-MPKEIEQLGRELLRDPADVRVAPQSTAADTVDQKICFVGHSDKLKVLA 232

Query: 577 LAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              +Q    R ++   TK  A+ +   L    I  + +H +    +R   +   + G F 
Sbjct: 233 EILKQEEVTRTIIFTRTKHGADRVARNLTRSGIAAKAIHGDKTQGQRQSTLEGYKAGHFH 292

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           VLV  ++   GLDIPE   V   +  +E       + I  IGR  R   S + I   +  
Sbjct: 293 VLVATDVASRGLDIPEVSHVINFNLPQE-----PEAYIHRIGRTGRAGESGIAITLCEED 347

Query: 694 TKSIQLAIDETTRRR--EKQLEHN-----KKHNINPQS 724
              +   +++  +R   E + E++     KK+   P +
Sbjct: 348 EMDLLKEVEKILKREIPEMKTEYSIVLRGKKNGAVPAA 385


>gi|260826097|ref|XP_002608002.1| hypothetical protein BRAFLDRAFT_74954 [Branchiostoma floridae]
 gi|229293352|gb|EEN64012.1| hypothetical protein BRAFLDRAFT_74954 [Branchiostoma floridae]
          Length = 430

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/348 (16%), Positives = 108/348 (31%), Gaps = 46/348 (13%)

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG-----E 456
           EL  +  +      +  +          +  + T   C   E+          G      
Sbjct: 69  ELARQTHQFITHNMISRSDEYHFLYPIGMPAMRTM-LCIGGESAKDQFEQSKRGVHMMVA 127

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L + + + +             +             + + GF      ++    F 
Sbjct: 128 TPGRLMDMLNKKAF-----------NLDTCRYLVLDEADRMIDMGFE-----EDIRTIFS 171

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-----LVDPPVEIRSARTQVEDV 571
            +   R  T++ SAT         +  +V+ +    G      +D   E+   + Q   +
Sbjct: 172 YFKGQR-QTLLFSATMPKKIQNFARTALVKPVTVNVGRAGAASLDVIQEVEYVK-QEAKI 229

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
              +    +    +L+    K   +D+ EYL  + +    +H      ER   I   R G
Sbjct: 230 VYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEERTRAIEAFREG 289

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           K DVLV  ++  +GLD P+   V   D           + +  IGR  R   + +     
Sbjct: 290 KKDVLVATDVASKGLDFPDIQHVINFD-----MPEDIENYVHRIGRTGRCGKTGIATTF- 343

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
                I  A DE+     K L    K  I P      ++E ++    +
Sbjct: 344 -----INKACDESVLLDLKHLLLEAKQKIPP------VLETLESESEK 380


>gi|156052539|ref|XP_001592196.1| eukaryotic initiation factor 4A-12 [Sclerotinia sclerotiorum 1980]
 gi|160385735|sp|A7EM88|FAL1_SCLS1 RecName: Full=ATP-dependent RNA helicase fal1
 gi|154704215|gb|EDO03954.1| eukaryotic initiation factor 4A-12 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 399

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     L+     + + +        +   GL    + +     + +   D
Sbjct: 198 ATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCD 257

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 258 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 312

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 313 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPVNRENYIHRIGRSGRFGRKGVAINF 367

Query: 691 DTITK 695
            T   
Sbjct: 368 VTSED 372


>gi|300692069|ref|YP_003753064.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum PSI07]
 gi|299079129|emb|CBJ51797.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum PSI07]
          Length = 614

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 9/146 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR A+ L E L E       +H ++    R   +  LR G+  VLV  ++  
Sbjct: 295 QAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNRTLTALRRGQLRVLVATDVAA 354

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAID 702
            G+D+P+   V   D  K+         +  IGR  R   S + +       + Q   I+
Sbjct: 355 RGIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGIAINLVNHGDTFQWRRIE 409

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEK 728
               RR   ++      + P+   + 
Sbjct: 410 RFVDRR---IDATVVEGLEPKRSPKP 432


>gi|302502646|ref|XP_003013284.1| hypothetical protein ARB_00469 [Arthroderma benhamiae CBS 112371]
 gi|291176847|gb|EFE32644.1| hypothetical protein ARB_00469 [Arthroderma benhamiae CBS 112371]
          Length = 1181

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 87/252 (34%), Gaps = 28/252 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     +E I+    +V P +    E+R+   +   + + + 
Sbjct: 708 QTVLFSATFPRNMEALARKTLSKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLELLG 767

Query: 577 LAAQQGL----RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 768 NLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKAGI 827

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F +L+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 828 FPILIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 880

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K      P+ +++ +   +D +       +      
Sbjct: 881 --------LTEDQERYSVDISKALKQSGQPVPEPIQKMVNAFLDKVKEGKEKASGSGFGG 932

Query: 751 QQLSLSKKKGKA 762
           + L    ++  A
Sbjct: 933 KGLERLDQERDA 944


>gi|316971006|gb|EFV54849.1| eukaryotic initiation factor 4A [Trichinella spiralis]
          Length = 465

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 76/197 (38%), Gaps = 25/197 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRP---------TGLVDPPVEIRSARTQVEDVYDE 574
             +++SAT    E+ Q     +   +R           G+    +E+     +++ + D 
Sbjct: 260 QVVLLSAT-MPDEVLQVTTKFMNNPVRILVRKEELTLDGIRQFYIEVGREEWKLDTLCDI 318

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                    + ++   +++  E L   L +R   V  MH ++   +R  I++  R G   
Sbjct: 319 --YTTLSISKAVIFCNSRQKVEKLARELTDRKFTVTCMHGDMTQQDRDVIMQQFRTGSSR 376

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT-------IGRAARNVNSKV- 686
           VL+  +LL  G+DI +  +V   D        ++ + I         IGR+ R     V 
Sbjct: 377 VLISTDLLARGIDIQQVSIVINYD-----IPHNRENYIHRYEQPAVFIGRSGRFGRVGVA 431

Query: 687 ILYADTITKSIQLAIDE 703
           I +     K +   I+E
Sbjct: 432 INFVTENDKRMMKDIEE 448


>gi|262172952|ref|ZP_06040629.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus MB-451]
 gi|261890310|gb|EEY36297.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus MB-451]
          Length = 464

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 15/190 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +G++   VE  + P       VE  I  A   V+     + 
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD--VKKKPAMLV 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++G   ++L+ + TK  A  L  YL E+ +    +H       R   + D + G+  
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +LV  ++   G+DIP+   V   +  K          +  IGR  R     K I     I
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKI-----AEDYVHRIGRTGRAGEVGKAISLVSAI 350

Query: 694 TKSIQLAIDE 703
                 AI+ 
Sbjct: 351 EAPELFAIER 360


>gi|90418629|ref|ZP_01226540.1| putative transcription-repair coupling factor [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336709|gb|EAS50414.1| putative transcription-repair coupling factor [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 1128

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 109/326 (33%), Gaps = 58/326 (17%)

Query: 182 TFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRT 241
              +A+ +   +RP I +A        +++          V    +  D +  +      
Sbjct: 36  AAMIARRVSDDRRPLIYIAETGRRRHDIFALASILAGPGTVCELDAP-DGFPGDGLPVTV 94

Query: 242 DTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGD 301
            T   + + +   +D           +R   ++ +  + I  +     +  +  ++++G+
Sbjct: 95  ATAGNRMAMLRWLLDEE---------KRPSVLITTPAALIRKVPPKSVWEGLHSEIRVGE 145

Query: 302 SVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEIS 361
           +++Q  L + L    Y   D     G     G  +EIFP+       R+      +  I 
Sbjct: 146 TLDQTALQAKLQHLGYWLDDRVDEPGEAAFRGKVLEIFPA-AAPRPCRIEHEDGVVTAIR 204

Query: 362 EFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQR 421
            + P++ + +   + + +   S  +       T  + I                      
Sbjct: 205 SYDPVSQRSVSETDCLIVDPASE-IVGADDGATGRQEI---------------------- 241

Query: 422 LEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPE-------DSLLFVD 474
                  D E L+T        +  R+L  +   E P T+F+Y+ +        + +  D
Sbjct: 242 -------DGETLQT-----GAPDSERFLCRQY--ERPETVFDYLQDADMVLETGAEIRAD 287

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEY 500
           E    + +I      D HR A LA++
Sbjct: 288 EVFDALQRIDA---DDPHRHAVLADH 310



 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 54/147 (36%), Gaps = 5/147 (3%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQ 581
             + ++ATP    L Q   + +  +       +    +++     +D  V D +     +
Sbjct: 731 HILTMTATPIPRTL-QSGFVGLSDLSIIATPPNRRSPVKTRVGPFDDAAVRDALTAERAR 789

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G +  +        E +   L E         +H ++K  E  + +     G+ DVL+  
Sbjct: 790 GGQSFVVCPRIEDLEPMAAKLQELVPEQTTVTLHGKMKPDEVEDAMLAFAHGEHDVLLAT 849

Query: 640 NLLREGLDIPECGLVAILDADKEGFLR 666
            ++  GLD+     + +  AD+ G   
Sbjct: 850 AIVESGLDVANANTMVVCHADRFGLAE 876


>gi|323507844|emb|CBQ67715.1| probable RNA helicase dbp2 (DEAD box protein) [Sporisorium
           reilianum]
          Length = 536

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 69/401 (17%), Positives = 141/401 (35%), Gaps = 58/401 (14%)

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKY 398
           PS ++  AW +++ G D+  I+E    +G+ I   +  +        + P       +  
Sbjct: 136 PSAIQSQAWPMALSGRDLVAIAE--TGSGKTIGFALPAMVHINAQPLLKPGDGPIALILA 193

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSR--YLTGRNPGE 456
              EL  ++    +  R   + RL  R      +         I +  R   +    PG 
Sbjct: 194 PTRELANQIQ--VECNRFGGSSRL--RTC---AVYGGVPKGPQIRDLQRGAEICIATPGR 246

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
               L +         VD     + +++ +   +  R     + GF         P   +
Sbjct: 247 ----LID--------MVDAGKTNLRRVTYLVMDEADRM---LDMGFE--------PQIRK 283

Query: 517 EWNCLRP--TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
               +RP   T++ SAT         G +     Q  I    +     V   +E+ +   
Sbjct: 284 ILQQIRPDRQTLMFSATWPKEVQRLAGDFLNNFAQVNIGSTELAANHNVKQIIEVCTEFE 343

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +   +   + L +    ++++   TKR+A+D+T++L +       +H + +  ER  ++ 
Sbjct: 344 KRGKLIGHLELISADNGKVIIFTSTKRVADDITKFLRQDGWPALAIHGDKQQQERDWVLA 403

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + + G+  ++V   +   GLD+ +   V   D     F  +    +  IGR  R   +  
Sbjct: 404 EFKSGRSPIMVATAVASRGLDVKDISYVINYD-----FPTNTEDYVHQIGRTGRAGRTGT 458

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
                T   S        + R    +    K  I P+ ++E
Sbjct: 459 AYTYFTPENS-------KSARELVGILREAKQEI-PREIEE 491


>gi|262274077|ref|ZP_06051889.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
 gi|262221887|gb|EEY73200.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
          Length = 618

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 75/193 (38%), Gaps = 22/193 (11%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVEHIKRGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRAGKAILLVRTNQIRM 356

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
              I+  T  R ++++                + + D +     A     +  Q+ S S 
Sbjct: 357 LRTIERVTSTRMEEIQ----------------LPLRDKVAEARLARLAADLHEQKESESL 400

Query: 758 KKGKAHLKSLRKQ 770
           +     ++ L++Q
Sbjct: 401 EAFVGLIEKLQEQ 413


>gi|258620096|ref|ZP_05715135.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|258587454|gb|EEW12164.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
          Length = 464

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 15/190 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +G++   VE  + P       VE  I  A   V+     + 
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD--VKKKPAMLV 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++G   ++L+ + TK  A  L  YL E+ +    +H       R   + D + G+  
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +LV  ++   G+DIP+   V   +  K          +  IGR  R     K I     I
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKI-----AEDYVHRIGRTGRAGEVGKAISLVSAI 350

Query: 694 TKSIQLAIDE 703
                 AI+ 
Sbjct: 351 EAPELFAIER 360


>gi|315037505|ref|YP_004031073.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1112]
 gi|325955969|ref|YP_004286579.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           30SC]
 gi|312275638|gb|ADQ58278.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1112]
 gi|325332534|gb|ADZ06442.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           30SC]
 gi|327182801|gb|AEA31248.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1118]
          Length = 497

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 113/331 (34%), Gaps = 44/331 (13%)

Query: 390 PTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSC-----QSIEN 444
                A++ I  E    L         ++ Q    R+  D               + I +
Sbjct: 64  DKKEKAIQAIIIEPTRELA--------IQTQEELFRLGRDEHTHVQVVYGGADIGRQIRS 115

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRL 504
              ++     G  P  L +++ +   + +D+    +                + + GF  
Sbjct: 116 LKHHVPSILVG-TPGRLLDHL-KRGTINLDKVKAVV----------LDEADEMLDMGFI- 162

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE- 560
                   L++      R  T++ SAT   P     E+         I+   L    ++ 
Sbjct: 163 --QDIESILKYA---KNRKQTLLFSATMPKPILRIGEKFMNHPKIVQIKAKELTADLIDQ 217

Query: 561 --IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
             +R+  ++  D+   +       L  L+   TKR  ++LT  L  R      +H ++  
Sbjct: 218 YFVRAKESEKFDIMCRLIDVQGPDL-ALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQ 276

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
             R+ +++  R GK D+LV  ++   GLDI     V   D       +   S +  IGR 
Sbjct: 277 ARRMAVLKRFREGKLDILVATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRT 331

Query: 679 ARNVNSKV-ILYADTITKSIQLAIDETTRRR 708
            R   + + + +           I++ T+++
Sbjct: 332 GRAGQNGISVTFVTPNEIGYMRTIEQLTQKK 362


>gi|302892891|ref|XP_003045327.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256726252|gb|EEU39614.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 596

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 96/265 (36%), Gaps = 29/265 (10%)

Query: 457 PPPTLFEYIPED-------SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
            P  L +++ +D       + + +DE+   + +    +  D   K  L       P    
Sbjct: 302 TPGRLKDFMSDDTVDLSQAAFVVLDEADRMLDKG---FEEDI--KQILGS----CPPREQ 352

Query: 510 NRPLRFEEWNCLRPTTIVVSA-------TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
            + L F          +  S        T GS   E   G +  Q           +E R
Sbjct: 353 RQTLMFTATWPQSVQALASSFMVSPVKITIGSSGKETAGGAVELQANARISQSVEVLEPR 412

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
               ++  +  E     Q+  RIL+  L K+ A  +  +L  + +RV  +H +++  +R 
Sbjct: 413 EKEFRLLQLLKEHQQGKQKNDRILVFCLYKKEATRVENFLSRKGVRVCGIHGDLRQEQRT 472

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           + +   + G   VLV  ++   GLDIPE  LV  +      F  +    +  IGR  R  
Sbjct: 473 KSLEAFKTGVTPVLVATDVAARGLDIPEVKLVINV-----TFPLTIEDYVHRIGRTGRAG 527

Query: 683 NSK-VILYADTITKSIQLAIDETTR 706
            +   I +     KS   ++    R
Sbjct: 528 KTGQAITFFTVEDKSHSGSLVNILR 552


>gi|317030312|ref|XP_001392304.2| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Aspergillus
           niger CBS 513.88]
 gi|143359932|sp|A2QQA8|PRP5_ASPNC RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
          Length = 1180

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 89/263 (33%), Gaps = 34/263 (12%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     +E ++    +V P +    E+R+   +   + + + 
Sbjct: 730 QTVLFSATFPRNMEALARKTLTKPIEIVVGGKSVVAPEITQIVEVRNDDQKFVRLLELLG 789

Query: 577 LAAQQGL----RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 790 NLYSSDENEDARALIFVDRQEAADALLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGI 849

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VL+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 850 FPVLIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 902

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K      P+ V++ +   ++ +       +      
Sbjct: 903 --------LTEDQERYSVDIAKALKQSGQKVPEPVQKLVDAFLEKVKAGKEKASASGFGG 954

Query: 751 QQLSLSKKKGKAHLKSLRKQMHL 773
           + L    ++  A       +M  
Sbjct: 955 KGLERLDQERDA------ARMRE 971


>gi|194333600|ref|YP_002015460.1| transcription-repair coupling factor [Prosthecochloris aestuarii
           DSM 271]
 gi|194311418|gb|ACF45813.1| transcription-repair coupling factor [Prosthecochloris aestuarii
           DSM 271]
          Length = 1120

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 85/240 (35%), Gaps = 33/240 (13%)

Query: 164 IHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
           I   +    + G+ GS  +  +A ++E +QRP +V+           ++       N   
Sbjct: 51  IDKDKSSIDISGLQGSLSSLLVAALVEDLQRPVMVI----------CNQDIFDLYDNDFT 100

Query: 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG 283
             +       P +Y    D      S++ E  + +  +    L  R              
Sbjct: 101 LLID------PASYHTAADELSAALSTLAEHRNALILADFDDLKIR-------------- 140

Query: 284 IGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHL 343
           + + +  S  I  L+        +L+  L +  + R+D     G F   G  I+IFP   
Sbjct: 141 LQNPDGASDKIFPLQNNSDAGYNKLIDFLSRNNFNRKDFVDAEGEFSTRGSIIDIFPFGA 200

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
            +   R+  FG+ I  I  F   +     +V+T+++    +++    +       I + L
Sbjct: 201 RE-PLRIEFFGDTITSIRSFDTNSQLSKTSVQTVEL--TGNFLLEPQSDEDRSWSIFDYL 257



 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 8/183 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     I+        PVE        + +   I     +  
Sbjct: 687 TLTMSATPIPRTLQFSMLGARDLSIVSTPPKNRQPVETMITTFDTDLLQSAIRTEINRKG 746

Query: 584 RILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++ +        E++ + L E    +R+ Y H ++ T E   I+ D    + DVL+  ++
Sbjct: 747 QVFVLHNRIAGLEEMKQTLQELVPGVRMAYAHGQMPTAELENIMMDFITHELDVLISTSI 806

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL-A 700
           +  GLDI     + I  AD  G     + L Q  GR  R+             ++++  A
Sbjct: 807 IGSGLDISNANTIIINRADMFGL----SDLYQLRGRVGRSDRKAYSYLITPPIQTLKQDA 862

Query: 701 IDE 703
           I  
Sbjct: 863 IQR 865


>gi|312138933|ref|YP_004006269.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|311888272|emb|CBH47584.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
          Length = 610

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 13/198 (6%)

Query: 523 PTTIVVSAT--PGSWEL-EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL-- 577
               + SAT  P   ++ +Q     VE  ++        +  R  +   +   D +    
Sbjct: 190 KQVALFSATMPPAIRKISKQYLHDPVEITVKAKTATASNITQRWVQVAHQRKLDALTRIL 249

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +    +++ V TK+  EDL E L  R      ++ ++   +R   I  L+ G  D+LV
Sbjct: 250 EVESFEAMIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILV 309

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLD+     V   D           S +  IGR  R   +   +L+     + 
Sbjct: 310 ATDVAARGLDVDRISHVVNYD-----IPHDTESYVHRIGRTGRAGRTGDALLFVAPRERH 364

Query: 697 IQLAIDETTRR--REKQL 712
           +  +I+ TTR+   E QL
Sbjct: 365 LLKSIERTTRQPLTEIQL 382


>gi|309361539|emb|CAP29366.2| CBR-LAF-1 protein [Caenorhabditis briggsae AF16]
          Length = 653

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 8/134 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D ++      L  L+ V TKR A DL  YL  +N +V  +H ++K  ER + +   R 
Sbjct: 435 LMDLLDATGDSSL-TLVFVETKRGASDLAYYLNRQNYQVVTIHGDLKQFEREKHLDLFRT 493

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI--L 688
           G   +LV   +   GLDIP    V   D             +  IGR  R  N  +    
Sbjct: 494 GTAPILVATAVAARGLDIPNVKHVINYD-----LPSDVDEYVHRIGRTGRVGNVGLATSF 548

Query: 689 YADTITKSIQLAID 702
           + D      +  +D
Sbjct: 549 FNDKNRNIARELMD 562


>gi|241762057|ref|ZP_04760141.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373523|gb|EER63110.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 506

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 89/253 (35%), Gaps = 16/253 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT  P   +L        +QI         T +    +E+   R++ + + D +
Sbjct: 193 QTLLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSP-RSKKKKLCDML 251

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A++    ++    K     L   L ++   V  +H ++   ER   +   + G+  V
Sbjct: 252 --RAEKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISV 309

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLD+     V   D             I  IGR  R   S   L   T   
Sbjct: 310 LVASDIAARGLDVKGISHVFNFDV-----PTHPDDYIHRIGRTGRGGASGEALTFVTPAD 364

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
              +A  E     E     N+K N +P   +E +         E +A  +     ++   
Sbjct: 365 EEAIAAIEKLMGVEIPRLGNRKKNAHPSKSEEAVSPKQAKPAQEKSAAPSPRKAPRKAET 424

Query: 756 SKKKGKAHLKSLR 768
            KK  +  L S+ 
Sbjct: 425 PKKSPEDRLDSVE 437


>gi|8825618|gb|AAF74278.2| vasa-like protein [Danio dangila]
          Length = 399

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 11/168 (6%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDV--YDEINL-- 577
            T++ SAT P   +      + V+ I    G+V     ++     QV+     D++    
Sbjct: 148 QTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQYSKRDQLLELL 207

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            A    R ++ V TKR A+ +  +L +  I    +H + +  ER + + D R+G+  VLV
Sbjct: 208 RATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRIGQCPVLV 267

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             ++   GLDI +   V   D        S    +  IGR  R  N+ 
Sbjct: 268 ATSVAARGLDIEQVQHVVNFD-----MPSSIDEYVHRIGRTGRCGNTG 310


>gi|143455555|sp|Q0E3X4|RH35A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 35A
 gi|51535964|dbj|BAD38045.1| putative DEAD-box protein abstrakt [Oryza sativa Japonica Group]
          Length = 627

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 93/262 (35%), Gaps = 32/262 (12%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      D+    F+ +   R  T++ SAT         +  +V+ +I   G  
Sbjct: 349 RLVDLGFE-----DDIREVFDHFKAQR-QTLLFSATMPKKIQNFAKSALVKPVIVNVGRA 402

Query: 555 ----VDPPVEIRSARTQVED--VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
               +D   E+   +   ED  +   +    +    +L+    K   + + EYL  + + 
Sbjct: 403 GAANLDVIQEVEYVK---EDARIIYLLECLQKTPPPVLVFCENKADVDYIHEYLLLKGVE 459

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H      ER   I   + GK DVLV  ++  +GLD P+   V   D   E      
Sbjct: 460 AVAIHGGKDQEERENAIEFFKNGKKDVLVATDVASKGLDFPDIQHVINYDMPAE-----I 514

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            + +  IGR  R   + +        ++    +D       K L    K  I P      
Sbjct: 515 ENYVHRIGRTGRCGKTGIATTFINKNQTETTLLD------LKHLLKEAKQRIPPV----- 563

Query: 729 IMEVIDPILLEDAATTNISIDA 750
           + E+ DP+  E+       +  
Sbjct: 564 LAELNDPLEDEETMAKESGVKG 585


>gi|296194577|ref|XP_002745047.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 3
           [Callithrix jacchus]
          Length = 690

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 506 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRSGKCPVLVATSV 565

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 566 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNH 617


>gi|296194575|ref|XP_002745046.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Callithrix jacchus]
          Length = 704

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 520 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRSGKCPVLVATSV 579

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 580 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNH 631


>gi|296194573|ref|XP_002745045.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Callithrix jacchus]
          Length = 724

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 540 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRSGKCPVLVATSV 599

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 600 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNH 651


>gi|289724644|gb|ADD18300.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 652

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 12/146 (8%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++  + ++ V TK+  +++T  +  +  R   +H +    ER  ++   R G+  +LV  
Sbjct: 363 EKDTKTIIFVETKKRVDEITRSISRQGWRACAIHGDKSQQERDYVLTSFRNGRSSILVAT 422

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   GLD+ +   V   D     +  +    +  IGR  R+ N+    Y    T +   
Sbjct: 423 DVAARGLDVDDVKFVINYD-----YPSNSEDYVHRIGRTGRSNNTGTA-YTLFTTANANK 476

Query: 700 AIDETTRRREKQLEHNKKHNINPQSV 725
           A D        Q+    K  INP+ V
Sbjct: 477 AND------LIQVLREAKQVINPRLV 496


>gi|328852836|gb|EGG01979.1| hypothetical protein MELLADRAFT_78893 [Melampsora larici-populina
           98AG31]
          Length = 537

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 134/362 (37%), Gaps = 50/362 (13%)

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKY 398
           PS ++  AW +++ G D+  IS     +G+ I  ++  +        + P       +  
Sbjct: 130 PSPIQCQAWPMALSGRDVVAISA--TGSGKTIAFSLPAMIHINAQPLLAPGDGPIVLILA 187

Query: 399 IKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
              EL +++    +  +   + R+     Y           Q I + SR          P
Sbjct: 188 PTRELAVQIQ--GECTKFGASSRIRNTCVYGGVP-----KGQQIRDLSR--GAEIVIATP 238

Query: 459 PTLFEYIPEDSLLFVDESHVT-IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE 517
             L + +         ES  T + +++ +   +  R     + GF         P   + 
Sbjct: 239 GRLIDML---------ESRRTNLQRVTYLVMDEADRM---LDMGFE--------PQIKKI 278

Query: 518 WNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSART 566
              +RP   T++ SAT    E+++     ++  I+             +   VE+ S   
Sbjct: 279 LEQIRPDRQTLMFSAT-WPKEIQRLANEYLKDFIQVNVGSLELTANVNITQIVEVCSDFE 337

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +   +   +   + +  ++L+ V TKR+A+DLT+YL +       +H + +  ER  ++ 
Sbjct: 338 KKGKLIKHLEKISAESAKVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQTERDWVLG 397

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + + G+  +++  ++   GLD+ +   V   D             I  IGR  R   +  
Sbjct: 398 EFKSGRSPIMIATDVASRGLDVKDVAYVINYD-----MPNGIEDYIHRIGRTGRAGRTGT 452

Query: 687 IL 688
             
Sbjct: 453 AY 454


>gi|254719124|ref|ZP_05180935.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 535

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 232 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 281

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 282 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 341

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 342 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 401

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 402 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 451


>gi|227894493|ref|ZP_04012298.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus ultunensis
           DSM 16047]
 gi|227863652|gb|EEJ71073.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus ultunensis
           DSM 16047]
          Length = 496

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 119/330 (36%), Gaps = 42/330 (12%)

Query: 390 PTLNTAMKYI----KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
                A++ I      EL ++  E  +  RL   +R   ++ Y    +      + I + 
Sbjct: 64  DKKEKAIQAIIIEPTRELAIQTQE--ELFRLGRDERAHVQVVYGGADI-----GRQIRSL 116

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505
             ++     G  P  L +++ +   + +D+    +                + + GF   
Sbjct: 117 KHHVPSILVG-TPGRLLDHL-KRGTIDLDKVKTVV----------LDEADEMLDMGFI-- 162

Query: 506 SCMDNRPLRFEEWNCLRPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE-- 560
                  L++      R  T++ SAT   P     E+         I+   L    ++  
Sbjct: 163 -QDIESILKYA---KNRKQTLLFSATMPKPILRIGEKFMNNPEIVQIKAKELTADLIDQY 218

Query: 561 -IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R+  ++  D+   +       L  L+   TKR  ++LT  L  R      +H ++   
Sbjct: 219 FVRAKESEKFDIMCRLIDVQGPDL-ALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQA 277

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            R+ +++  R GK D+LV  ++   GLDI     V   D       +   S +  IGR  
Sbjct: 278 RRMTVLKRFREGKLDILVATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRTG 332

Query: 680 RNVNSKV-ILYADTITKSIQLAIDETTRRR 708
           R   + + + +           I++ T+++
Sbjct: 333 RAGQNGISVTFVTPNEIGYMRTIEQLTKKK 362


>gi|242012227|ref|XP_002426835.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212511048|gb|EEB14097.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 678

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 68/454 (14%), Positives = 148/454 (32%), Gaps = 85/454 (18%)

Query: 283 GIGSVESYSQMIVQLKIGDSVEQKELLSSLVK--QQYKRQDIG--------------IIR 326
            +   +     +   K       +++ +       QY R D+                  
Sbjct: 73  KLPKPKWNLSNLQPFKKNFYTPHRDISNRSNNEINQY-RNDMAMTIIGKDIPYPITRFQE 131

Query: 327 GTF--------RVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378
             F        R  G ++   P+ ++   W +++ G DI  I++    +G+ I  +  + 
Sbjct: 132 ANFPDYIMNVIRKQGFTV---PTPIQAQGWPIALSGKDIVGIAK--TGSGKTIAYM--LP 184

Query: 379 IYANSHYVTPRPTLNTAMKYIKE---ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLET 435
              + H   P    +  +  I     EL  ++          EA R+     +       
Sbjct: 185 AIVHIHNQPPLELNDGPIALILAPTRELAQQIQ--SVANDFGEATRIRNSCIF------- 235

Query: 436 TGSCQSIENYSRYLTGRNP-GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRK 494
            G+ +    +    +G       P  L +++ + +          + + + +   +  R 
Sbjct: 236 GGAPKG-PQFRDLESGVEIVIATPGRLIDFLEKGTT--------NLRRCTYLVLDEADRM 286

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPT 552
               + GF         P   +    +RP    ++ SAT         +  + + I    
Sbjct: 287 ---LDMGFE--------PQIRKIVEQIRPDRQVLMWSATWPKEVRALAEDYLTDYIQLNI 335

Query: 553 GLVDP--------PVEI---RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G +           V++        ++  +  EI    ++  + ++ V TKR  +++T+ 
Sbjct: 336 GSLQLSANHNILQIVDVCQEHEKENKLRQLLHEIGS--EKENKTIIFVETKRKVDNITQI 393

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L +       +H +    ER  ++   R G+  +LV  ++   GLD+ +   V I D   
Sbjct: 394 LRKDGWPALSIHGDKNQQERDHVLTQFRNGRASILVATDVAARGLDVEDVKFVIIFD--- 450

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             +  S    I  IGR  R+  +       T   
Sbjct: 451 --YPSSLEDYIHRIGRTGRSEQTGTAYAFFTPHN 482


>gi|238762212|ref|ZP_04623184.1| Transcription-repair-coupling factor [Yersinia kristensenii ATCC
           33638]
 gi|238699559|gb|EEP92304.1| Transcription-repair-coupling factor [Yersinia kristensenii ATCC
           33638]
          Length = 1048

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 82/204 (40%), Gaps = 22/204 (10%)

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
               I++   + +  +   E      + +K G  + + +L + L +  Y+  D  +  G 
Sbjct: 2   ERGVIILPINTLMQRVCPHEFLHGHALVMKKGQHLSRDKLRAQLEQAGYRSVDQVMEHGE 61

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           F   G  ++++P   E+  +R+  F +DI+ +  F   + + +  VE I +     +   
Sbjct: 62  FATRGALLDLYPMGSEE-PYRIDFFDDDIDSLRVFDVDSQRTLSEVEQINLLPAHEFPID 120

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRY 448
           +     A++  + + + +           E +R  + I    + +        IE +   
Sbjct: 121 K----NAIELFRSQWREQ----------FEVRRDAEHI---YQQVSKGIWPAGIEYWQPL 163

Query: 449 LTGRNPGEPPPTLFEYIPEDSLLF 472
                  +P PTLF Y+PE++LL 
Sbjct: 164 FFS----QPLPTLFSYLPENTLLI 183



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + ++ATP    L     G+    II   P   +     +R   + V  V + I     +
Sbjct: 651 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV--VREAILREILR 708

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G ++          E  T+ L E     R    H +++  +   ++ D    +F+VLV  
Sbjct: 709 GGQVYYLYNDVENIEKATQRLAELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCT 768

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  AD  G  +    L Q  GR  R+ +           K++
Sbjct: 769 TIIETGIDIPSANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPNPKAM 822


>gi|199598808|ref|ZP_03212220.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|229551599|ref|ZP_04440324.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus
           LMS2-1]
 gi|258509533|ref|YP_003172284.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|258540734|ref|YP_003175233.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|199590313|gb|EDY98407.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|229315064|gb|EEN81037.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus
           LMS2-1]
 gi|257149460|emb|CAR88433.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|257152410|emb|CAR91382.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|259650800|dbj|BAI42962.1| RNA helicase [Lactobacillus rhamnosus GG]
          Length = 502

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 96/247 (38%), Gaps = 21/247 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  +  +      + E +I   +   L    VE   +R+   +  DV   +  
Sbjct: 176 QTLLFSATMPAAIMRLTNKFMKEPVIVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                L  L+   TKR  ++LT  L  R  R   +H ++   +R+ ++R  + G+ D LV
Sbjct: 236 VQDPDL-ALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R  +  V + +       
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIE 349

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
               I++ T++R   ++        P + +E +M  I   L         +   +  +++
Sbjct: 350 YLHTIEDLTKKRMLPMK--------PPTAEEALMGQISSGLATIKEQVEANDTEKYEAMA 401

Query: 757 KKKGKAH 763
           +   + +
Sbjct: 402 ETLLENY 408


>gi|149910407|ref|ZP_01899049.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
 gi|149806555|gb|EDM66524.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
          Length = 460

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/381 (16%), Positives = 124/381 (32%), Gaps = 62/381 (16%)

Query: 419 AQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHV 478
            + L   + Y ++++    S Q  E   R          P  L +         + E  +
Sbjct: 93  MKHLGMSLDYQIQLIIGRESFQHQEKLLRK-NPEVLIATPGRLLD--------HIREKSI 143

Query: 479 TIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
           ++  +  +   +  R     + GFR     D+          ++  T++ SAT     LE
Sbjct: 144 SLEHLEFLVLDEADRM---LDMGFR-----DDVSAISNSAPNVKRQTMLFSAT-----LE 190

Query: 539 QCQ-GIIVEQIIRPTGLVD--------PPVEIR--SARTQVEDVYDEINLAAQQGLR-IL 586
                 I  Q++R    ++          +E R   +          ++L   +  R +L
Sbjct: 191 HVDVANICNQVLRAPERIEINRSNDQHEKIEQRLFFSDNLTHKEEQLVHLVKSEDYRQLL 250

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +   TK   E L + L + +I    +H ++   +R   + D R G+  VLV  ++   GL
Sbjct: 251 IFTATKLDTERLAKLLMDNDIDATSIHGDMLQNQRKRTLEDFRRGRVGVLVATDVAARGL 310

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           DI     V   D        +    I   GR  R   + + +   +              
Sbjct: 311 DIRTLSHVINFD-----LPINPEDFIHRTGRTGRAGATGIAISLVSPKDWTSFG------ 359

Query: 707 RREKQLEHNKK-------------HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
             + Q     K                 P+  K+++         + A   + +   Q+ 
Sbjct: 360 --KIQSYLKVKLPCTMLEGFEAKFKGFKPKPAKKRLPVSNKGRPAKLARKGDKNAPKQKQ 417

Query: 754 SLSKKKGKAHLKSLRKQMHLA 774
           + + K+ K   + +R  M  A
Sbjct: 418 NTAPKQDKK--QGMRDSMASA 436


>gi|110666996|ref|YP_656807.1| Hef nuclease [Haloquadratum walsbyi DSM 16790]
 gi|109624743|emb|CAJ51150.1| probable nuclease domain protein/ probable ATP-dependent RNA
           helicase [Haloquadratum walsbyi DSM 16790]
          Length = 851

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 83/188 (44%), Gaps = 22/188 (11%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-------HSEVKTLERIEIIRDLRLG 631
            + G R+++   ++  AE LTE+L       R++          +   E+ + +   R G
Sbjct: 368 IEGGERVIIFTESRDTAEALTEFLSASFDVQRFVGQNDTGRSEGMTQREQQKALTAFRSG 427

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YA 690
           +F+VL+  ++  EGLD+PE  LV   +      + +    IQ  GR  R    +V++  A
Sbjct: 428 EFEVLISTSVAEEGLDVPEVDLVLFFEP-----VPTAIRSIQRKGRTGRQTEGRVVVLLA 482

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
           +         I   +RRR+K++E         +S+K+ + ++   I+      T  + D+
Sbjct: 483 EDTRDEAYFWI---SRRRQKKMESEL------RSLKQSVDDIESSIISPQEELTTYNHDS 533

Query: 751 QQLSLSKK 758
              + +K 
Sbjct: 534 STETDAKA 541


>gi|81295381|ref|NP_001032278.1| nucleolar RNA helicase 2 [Rattus norvegicus]
 gi|123780397|sp|Q3B8Q1|DDX21_RAT RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
           protein 21; AltName: Full=Gu-alpha; AltName:
           Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
           RNA helicase II; AltName: Full=RH II/Gu
 gi|77748254|gb|AAI05879.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Rattus norvegicus]
 gi|149038676|gb|EDL92965.1| rCG22008, isoform CRA_b [Rattus norvegicus]
          Length = 782

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 96/254 (37%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W         +     V+ I + T      VE  + +    +    + 
Sbjct: 365 PQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIG 424

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++    +    + +H ++   +R   ++  R G 
Sbjct: 425 DVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFRNGN 483

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 484 FGVLVATNVAARGLDIPEVDLVVQSCPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 538

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QLA          Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 539 HKEEYQLA----------QVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 586

Query: 753 LSLSKKKGKAHLKS 766
           +   K+  +  ++ 
Sbjct: 587 IGHFKQSAEKLIEE 600


>gi|324506599|gb|ADY42814.1| Eukaryotic initiation factor 4A [Ascaris suum]
 gi|324507947|gb|ADY43360.1| Eukaryotic initiation factor 4A [Ascaris suum]
          Length = 415

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 515 FEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSA 564
           +E + C+      +++SAT  +  LE     + + +        +   G+    +++   
Sbjct: 206 YEVFKCMPNDVQVVLLSATMPAEVLEVTNRFMNDPVRILVKKEELTLEGIRQFYIDVEKE 265

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             + E + D          + ++   T+R  + L   + +    V  MH +++  ER  I
Sbjct: 266 EWKFETLCDL--YQTVNVTQAVIFCNTRRKVDYLANQMTKEKYTVSCMHGDMEQSERDLI 323

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D        ++ + I  IGR+ R    
Sbjct: 324 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRK 378

Query: 685 KVILYADTITKSIQL 699
            V +   T   + QL
Sbjct: 379 GVAINFVTEQDTRQL 393


>gi|297571406|ref|YP_003697180.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931753|gb|ADH92561.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 620

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 11/171 (6%)

Query: 547 QIIRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
           Q+  P+  VD   +   +   R ++  +   +          L+ V T+  AEDL   L 
Sbjct: 208 QVSSPSSTVDTITQTYAVVPTRHKIGALARVLATTEAD--AALVFVRTRATAEDLAIELS 265

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            R ++   +  +V   +R +++  LR G  DVLV  ++   GLD+   GLV   D  +E 
Sbjct: 266 TRGVQAAALSGDVAQKDREKLVDRLRQGSIDVLVATDVAARGLDVERIGLVVNFDIPREV 325

Query: 664 FLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRREKQLE 713
                 + +  IGR  R       + +     K     I++ TR +  Q+E
Sbjct: 326 -----ETYVHRIGRTGRAGREGTALSFVTPKEKQRLRRIEKVTRTQMTQVE 371


>gi|255994799|ref|ZP_05427934.1| transcription-repair coupling factor [Eubacterium saphenum ATCC
           49989]
 gi|255993512|gb|EEU03601.1| transcription-repair coupling factor [Eubacterium saphenum ATCC
           49989]
          Length = 1092

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 22/226 (9%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           ++GV  S     +++ I+   R   ++A       QL +         A+EYF       
Sbjct: 9   VIGVEASASARYISENIKNHDR-VFLVAATAEDCMQLAA---------ALEYFTKK---- 54

Query: 233 QPEAYVPRTDTYI-EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
             E  V   D +   +     ++I  +R  A + +  +  C+V+ +   I    S  +  
Sbjct: 55  --ETIVLSKDLFFGYESRDRQQEISFLR--AVKRIASQERCMVIVTPFMINTKVS-SAVF 109

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           +  + L +G  + ++++   L +  Y+R+      G + V G  I++      +   R+ 
Sbjct: 110 KSALTLTMGQDISREDVEVQLSELGYERRQNAYEDGEYAVRGGIIDV--MQDGENGVRIE 167

Query: 352 MFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
            FG+ I+ I +F   T +    +E+I I   S       +    + 
Sbjct: 168 FFGDCIDGIRKFDIKTQRSSEALESIDIEPVSFANGDEDSKIDIID 213



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 68/186 (36%), Gaps = 10/186 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    +     G     +I    L   PV         E + + I     +  
Sbjct: 692 VLTLSATPIPRTMHMAISGARDLSLITHPPLERMPVNTFVYIKSDEIMREAIEREVARKG 751

Query: 584 RILLTVLTKRMAEDLTEYLYE--RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++ +        +D+ E +    + IRV  ++ ++      + +     G+ DVLV   +
Sbjct: 752 QVYVVCRRISHMQDVKEKIERLVKGIRVDTVNGQMNEKYIEDTLSSFIAGEIDVLVCTKI 811

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DI     + ILDAD  G       L Q  GR  R   S    +A  +    +   
Sbjct: 812 IETGIDIKNANTIIILDADMMGIAE----LYQLRGRVGRGNRS---SFAYLLHNDYKKLS 864

Query: 702 DETTRR 707
           DE   R
Sbjct: 865 DEQKSR 870


>gi|313221011|emb|CBY31843.1| unnamed protein product [Oikopleura dioica]
          Length = 497

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 72/184 (39%), Gaps = 22/184 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ---- 580
           T + SAT      E       +  +RP  +      I  A T V   ++++    +    
Sbjct: 255 TALFSAT-----FETAIQSAAQDYLRPNYIFVAIGIIGGANTAVTQQFEQLQKREKFNRT 309

Query: 581 -------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                  QG R L+ V TK  A+ L   L    I+   +H + +  +R + I DL+  + 
Sbjct: 310 VEICKQNQGKRTLIFVATKIFADSLGSMLVGDGIKATTIHGDRQQRDREQAINDLKANRM 369

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
            VLV  ++   G+DI +  +V   D  KE       S I  IGR AR       I + D 
Sbjct: 370 HVLVATDVAARGIDIDDVEVVINFDFPKE-----LESYIHRIGRTARKGKKGLAITFIDA 424

Query: 693 ITKS 696
           +   
Sbjct: 425 MKDR 428


>gi|306840535|ref|ZP_07473294.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO2]
 gi|306289550|gb|EFM60768.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO2]
          Length = 549

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 246 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 295

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 296 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 355

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 356 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 415

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 416 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 465


>gi|289434134|ref|YP_003464006.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170378|emb|CBH26918.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 526

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 98/256 (38%), Gaps = 16/256 (6%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P     E+         I+   +    +E    +   ++ +D ++    
Sbjct: 179 QTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLD 238

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV 
Sbjct: 239 VQAPELAIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 298

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R       I +        
Sbjct: 299 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGY 353

Query: 698 QLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
              ++ETT++R + L+    ++      +   EKI E +    L D  T    +  +  +
Sbjct: 354 LRIVEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAVTEENLSDYKTYANQLLEKYDA 413

Query: 755 LSKKKGKAHLKSLRKQ 770
                  A LK L K+
Sbjct: 414 TDIA--AAMLKMLAKE 427


>gi|148686462|gb|EDL18409.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Mus musculus]
          Length = 715

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 526 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 585

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + DT + + 
Sbjct: 586 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDTDSDNH 637


>gi|7385089|gb|AAF61690.1|AF220365_1 nucleolar RNA helicase II/Gu [Mus musculus]
 gi|148700138|gb|EDL32085.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_a [Mus
           musculus]
          Length = 805

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 97/254 (38%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W         +     V+ I + T      VE  + +    +    + 
Sbjct: 395 PQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIG 454

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++    +    + +H ++   +R   ++  R G 
Sbjct: 455 DVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFRNGN 513

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 514 FGVLVATNVAARGLDIPEVDLVVQSCPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 568

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QLA          Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 569 NKEEYQLA----------QVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 616

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 617 ISHFKQSAEKLIEE 630


>gi|225007636|ref|NP_001139357.1| probable ATP-dependent RNA helicase DDX4 isoform 1 [Mus musculus]
 gi|74223562|dbj|BAE21618.1| unnamed protein product [Mus musculus]
 gi|187950715|gb|AAI37602.1| Ddx4 protein [Mus musculus]
 gi|219519729|gb|AAI44761.1| Ddx4 protein [Mus musculus]
          Length = 728

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 539 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 598

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + DT + + 
Sbjct: 599 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDTDSDNH 650


>gi|268573086|ref|XP_002641520.1| Hypothetical protein CBG09816 [Caenorhabditis briggsae]
          Length = 628

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 8/134 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D ++      L  L+ V TKR A DL  YL  +N +V  +H ++K  ER + +   R 
Sbjct: 410 LMDLLDATGDSSL-TLVFVETKRGASDLAYYLNRQNYQVVTIHGDLKQFEREKHLDLFRT 468

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI--L 688
           G   +LV   +   GLDIP    V   D             +  IGR  R  N  +    
Sbjct: 469 GTAPILVATAVAARGLDIPNVKHVINYD-----LPSDVDEYVHRIGRTGRVGNVGLATSF 523

Query: 689 YADTITKSIQLAID 702
           + D      +  +D
Sbjct: 524 FNDKNRNIARELMD 537


>gi|33859536|ref|NP_034159.1| probable ATP-dependent RNA helicase DDX4 isoform 2 [Mus musculus]
 gi|20141439|sp|Q61496|DDX4_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Mvh; AltName:
           Full=Vasa homolog
 gi|12852922|dbj|BAB29578.1| unnamed protein product [Mus musculus]
          Length = 702

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 513 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 572

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + DT + + 
Sbjct: 573 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDTDSDNH 624


>gi|149732732|ref|XP_001496163.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
           isoform 1 [Equus caballus]
          Length = 725

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 69/189 (36%), Gaps = 28/189 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--- 580
            T++ SAT    E+++  G  ++            V +        DV   I    Q   
Sbjct: 477 QTLMFSAT-FPEEIQKLAGEFLKSKY-------LFVAVGQVGGACRDVQQTILQVGQYSK 528

Query: 581 -----------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                         R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R
Sbjct: 529 REKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFR 588

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            GK  VLV  ++   GLDI     V   D        +    +  IGR  R  N+   + 
Sbjct: 589 CGKCPVLVATSVAARGLDIENVQHVINFD-----LPSAIDEYVHRIGRTGRCGNTGRAVS 643

Query: 689 YADTITKSI 697
           + D  + S 
Sbjct: 644 FFDPESDSH 652


>gi|149732736|ref|XP_001496190.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
           isoform 3 [Equus caballus]
          Length = 691

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 69/189 (36%), Gaps = 28/189 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--- 580
            T++ SAT    E+++  G  ++            V +        DV   I    Q   
Sbjct: 443 QTLMFSAT-FPEEIQKLAGEFLKSKY-------LFVAVGQVGGACRDVQQTILQVGQYSK 494

Query: 581 -----------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                         R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R
Sbjct: 495 REKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFR 554

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            GK  VLV  ++   GLDI     V   D        +    +  IGR  R  N+   + 
Sbjct: 555 CGKCPVLVATSVAARGLDIENVQHVINFD-----LPSAIDEYVHRIGRTGRCGNTGRAVS 609

Query: 689 YADTITKSI 697
           + D  + S 
Sbjct: 610 FFDPESDSH 618


>gi|256369477|ref|YP_003106985.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|255999637|gb|ACU48036.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
          Length = 535

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 232 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 281

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 282 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 341

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 342 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 401

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 402 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 451


>gi|148560232|ref|YP_001258986.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
 gi|161619002|ref|YP_001592889.1| DEAD/DEAH box helicase domain-containing protein [Brucella canis
           ATCC 23365]
 gi|254701799|ref|ZP_05163627.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|256061140|ref|ZP_05451294.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|148371489|gb|ABQ61468.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
           ATCC 25840]
 gi|161335813|gb|ABX62118.1| DEAD/DEAH box helicase domain protein [Brucella canis ATCC 23365]
          Length = 535

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 232 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 281

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 282 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 341

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 342 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 401

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 402 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 451


>gi|299066924|emb|CBJ38119.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum CMR15]
          Length = 613

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 9/146 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR A+ L E L E       +H ++    R   +  LR G+  VLV  ++  
Sbjct: 295 QAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNRTLTALRRGQLRVLVATDVAA 354

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAID 702
            G+D+P+   V   D  K+         +  IGR  R   S + +       + Q   I+
Sbjct: 355 RGIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGIAINLVNHGDTFQWRRIE 409

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEK 728
               RR   ++      + P+   + 
Sbjct: 410 RFVDRR---IDATVVEGLEPKRSPKP 432


>gi|225850461|ref|YP_002730695.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
 gi|225644960|gb|ACO03146.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
          Length = 403

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 74/205 (36%), Gaps = 27/205 (13%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA--- 578
              T++ SAT     +   +  + +            V+I+     V+ +  +       
Sbjct: 185 VKQTLLFSATMPKAIMRLAERFLNDDY--------EIVKIKPEEVTVDRIKQKAYRVDTG 236

Query: 579 -----------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
                        +G + ++   TKR A++L++ L         +H +    +R  ++RD
Sbjct: 237 KEFETLTKILNENEGKKSIVFTETKRGADELSKKLRREGFNADAIHGDYSQAKRERVLRD 296

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            R  + D+LV  ++   GLDI    +V      ++       S I  IGR  R     + 
Sbjct: 297 FRRNRIDILVATDVAARGLDIKGVDVVYNYSLPRDV-----ESYIHRIGRTGRAGKDGLA 351

Query: 688 LYADTITKSIQLAIDETTRRREKQL 712
           +   +  +     I +   R + QL
Sbjct: 352 ISIISTLEDRLFEIVKKKTRSDIQL 376


>gi|296190482|ref|XP_002743273.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Callithrix
           jacchus]
          Length = 437

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + +        +   G+    V +     + +   D
Sbjct: 211 ATQVVLISATLPHEILEMTNKFMTDPVRILVKRDKLTLEGIKQFFVAVEREEWKFDTLCD 270

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      ++++   TKR  + LTE + E N  V  +H ++   E   I+++ R 
Sbjct: 271 LYDTLTIT-----QVVIFCNTKRKVDWLTEKMREANFTVSSIHGDMPQKEWESIMKEFRA 325

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+P+  L+   D        ++   I  IGR+ R     V I +
Sbjct: 326 GTSQVLISTDVWARGLDVPQVSLIITYD-----LTNNRELYIHRIGRSGRYGRKGVAINF 380

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 381 VKNDDIRILRDIEQ 394


>gi|260809351|ref|XP_002599469.1| hypothetical protein BRAFLDRAFT_122755 [Branchiostoma floridae]
 gi|229284748|gb|EEN55481.1| hypothetical protein BRAFLDRAFT_122755 [Branchiostoma floridae]
          Length = 623

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 73/190 (38%), Gaps = 20/190 (10%)

Query: 519 NCLRP--TTIVVSATPGSWELEQCQGIIVE---------QIIRPTGLVD--PPVEIRSAR 565
             +RP   T++ SAT      +  +  + E         Q+     ++     V+     
Sbjct: 283 EQIRPDRQTLMYSATWPKEVRQLAEEFLKEYTQINIGALQLSANHNILQIVDVVQEHEKD 342

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            ++  + +EI    ++  + ++ V TKR  +DLT  +         +H +    ER  ++
Sbjct: 343 HKLSRLLEEIM--GEKENKTIIFVETKRRVDDLTRRMRRDGWPAMCIHGDKSQPERDWVL 400

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R GK  +LV  ++   GLD+ +   V   D     +  S    +  IGR AR+  + 
Sbjct: 401 NQFRSGKAPILVATDVASRGLDVSDIKFVINFD-----YPNSAEDYVHRIGRTARSDRTG 455

Query: 686 VILYADTITK 695
                 T + 
Sbjct: 456 TAYTFFTPSN 465


>gi|301112965|ref|XP_002998253.1| eukaryotic initiation factor 4A-III, putative [Phytophthora
           infestans T30-4]
 gi|262112547|gb|EEY70599.1| eukaryotic initiation factor 4A-III, putative [Phytophthora
           infestans T30-4]
          Length = 406

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 78/193 (40%), Gaps = 22/193 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              ++VSAT     L+  +  + E +        +   G+    V +     + +   D+
Sbjct: 207 TQVLLVSATMPQEVLDLTRKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL 266

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TKR  + LT  + E N  V  MH ++   ER  I+++ R G
Sbjct: 267 YDTLTIT-----QAVIFCNTKRKVDWLTSKMREANFTVSAMHGDMPQKERDAIMQEFRSG 321

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
              VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I + 
Sbjct: 322 GSRVLITTDVWGRGLDVQQVSLVICYD-----LPNNRELYIHRIGRSGRFGRKGVAINFV 376

Query: 691 DTITKSIQLAIDE 703
                 I   I++
Sbjct: 377 KDDDIRILRDIEQ 389


>gi|262164808|ref|ZP_06032546.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM223]
 gi|262027188|gb|EEY45855.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM223]
          Length = 464

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 15/190 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +G++   VE  + P       VE  I  A   V+     + 
Sbjct: 178 KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD--VKKKPAMLV 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++G   ++L+ + TK  A  L  YL E+ +    +H       R   + D + G+  
Sbjct: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           +LV  ++   G+DIP+   V   +  K          +  IGR  R     K I     I
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKI-----AEDYVHRIGRTGRAGEVGKAISLVSAI 350

Query: 694 TKSIQLAIDE 703
                 AI+ 
Sbjct: 351 EAPELFAIER 360


>gi|226480840|emb|CAX73517.1| ATP-dependent RNA helicase DDX3X [Schistosoma japonicum]
          Length = 637

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 6/135 (4%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D   ++   ++ G   L+ V TKR A+ L  YLY +  +V  +H +    +R   +   R
Sbjct: 419 DALIDLLANSEAGTLTLVFVETKRGADALENYLYSQKFQVASIHGDRTQEDRELALSCFR 478

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G+  VLV   +   GLDIP    V   D             +  IGR  R  N      
Sbjct: 479 SGRTPVLVATAVAARGLDIPNVKHVINYD-----LPSDIEEYVHRIGRTGRVGNLGLATS 533

Query: 689 YADTITKSIQLAIDE 703
           + +   +++   + E
Sbjct: 534 FFNDKNRNLARGLVE 548


>gi|226479202|emb|CAX73096.1| ATP-dependent RNA helicase DDX3Y [Schistosoma japonicum]
          Length = 270

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 6/135 (4%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D   ++   ++ G   L+ V TKR A+ L  YLY +  +V  +H +    +R   +   R
Sbjct: 52  DALIDLLANSEAGTLTLVFVETKRGADALENYLYSQKFQVASIHGDRTQEDRELALSCFR 111

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G+  VLV   +   GLDIP    V   D             +  IGR  R  N      
Sbjct: 112 SGRTPVLVATAVAARGLDIPNVKHVINYD-----LPSDIEEYVHRIGRTGRVGNLGLATS 166

Query: 689 YADTITKSIQLAIDE 703
           + +   +++   + E
Sbjct: 167 FFNDKNRNLARGLVE 181


>gi|256073063|ref|XP_002572852.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658018|emb|CAZ29084.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 769

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 73/187 (39%), Gaps = 16/187 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE-------IN 576
            T++ SAT         +  + + I    G V          TQ+ ++ D+       I 
Sbjct: 272 QTLMWSATWPREVQTLAREFLTDYIQVNIGSVSLHA--NPNITQIVEIMDDWSKEQRLIE 329

Query: 577 LAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           L    G  R L+ V TKR  + LT  L  R   V  MH   +  +R   + + + G+ ++
Sbjct: 330 LLTSFGRARTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLANFKSGRMNI 389

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI     V   D     F       I  IGR AR+  +    +     K
Sbjct: 390 LVATDVASRGLDIDNIEYVVNFD-----FPNQTEDYIHRIGRTARSDKTGTA-FTFFTHK 443

Query: 696 SIQLAID 702
           +++ A D
Sbjct: 444 NVRQARD 450


>gi|168178014|ref|ZP_02612678.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum NCTC 2916]
 gi|182671239|gb|EDT83213.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum NCTC 2916]
          Length = 425

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 89/254 (35%), Gaps = 41/254 (16%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
                ++ SAT    E+ +    IV+  IR        VE+    + V+ +  E+    +
Sbjct: 179 KIRQNLLFSAT-MPSEITKLVDSIVKDPIR--------VEVTPVSSTVDTITQEVYHVRK 229

Query: 581 QGLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +  R               L+   TKR A  + + L E  I    +H       R   + 
Sbjct: 230 KQKRSLLKHLLRDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALN 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + + GK  VLV  ++   G+D+ E   V   +           + +  IGR  R     V
Sbjct: 290 NFKEGKIRVLVATDIAARGIDVNELSHVFNYN-----LPDVPETYVHRIGRTGRAGAKGV 344

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
            +            I+ET   +  +   NK+    P  V E     I  I  ++    N 
Sbjct: 345 AISFCD--------IEETKSLKAIEKLINKE---IP--VVEDHPYKIRHINEDEVRKENT 391

Query: 747 SIDAQQLSLSKKKG 760
             ++ +   SK++G
Sbjct: 392 KNNSNKKPSSKRQG 405


>gi|163843319|ref|YP_001627723.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis
           ATCC 23445]
 gi|163674042|gb|ABY38153.1| DEAD/DEAH box helicase domain protein [Brucella suis ATCC 23445]
          Length = 535

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 232 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 281

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 282 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 341

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 342 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 401

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 402 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 451


>gi|291236621|ref|XP_002738237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21-like
           [Saccoglossus kowalevskii]
          Length = 700

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 117/324 (36%), Gaps = 47/324 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGM-YRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
            P  + +Y+ +++L      HV + ++  M   G       +    +++ +  +N     
Sbjct: 245 TPGRILDYVQKNTLNLSQLKHVILDEVDRMLDMGFADTVEEILSASYKMDNPGEN----- 299

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
                  P T++ SAT   W     +  +  +I R   +    ++     T VE +    
Sbjct: 300 -------PQTLLFSATLPEWVYRTAKKYMKSEIKRVDLIGQQKLK---TATTVEHLAIRC 349

Query: 576 NLAAQ-------------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           +   +             +  R ++   TK+ A ++          V+ +H ++   +R 
Sbjct: 350 HYRQRAATISDVVQVYSGKHGRCMIFTETKKDANEMGLS-SSIRQDVQVLHGDIAQNQRE 408

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             ++  R GKF  LV  ++   GLDIPE  L+ + +  K+       + I   GR  R  
Sbjct: 409 ITLKGFRDGKFRCLVATDVAARGLDIPEVDLIVMCEPPKD-----AENYIHRSGRTGRAG 463

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
            + V +      +   L + E    R   ++  +     P+ + +           +DA 
Sbjct: 464 RTGVSVCFYKPNEEHVLKLIE----RRAGIKFRRVGAPQPEDIIK--------TSADDAL 511

Query: 743 TTNISIDAQQLSLSKKKGKAHLKS 766
            +  ++    + L  +  +  ++ 
Sbjct: 512 KSLDAVPESAIKLFHEAAEKLIEE 535


>gi|281209492|gb|EFA83660.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 880

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 15/159 (9%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L + L   NI V  +HS+    +R +I+   R GK  VL+   L+  
Sbjct: 629 VLIFVQSKERAQELFQELIFDNINVDVIHSDRTQFQRDKIVEKFRTGKIWVLICTELMAR 688

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS-IQLAIDE 703
           G+D      V   D     F ++  S +  IGR  R   + V     T   + +  +I  
Sbjct: 689 GMDFKGVNYVINFD-----FPKTVASYVHRIGRTGRAGRTGVAYTLYTEADAPMLPSIAN 743

Query: 704 TTRR---------REKQLEHNKKHNINPQSVKEKIMEVI 733
             R             +++   KHN   + V+ + +  I
Sbjct: 744 VIRNSGSEVPEWMHTIKVKRQDKHNYKKRGVERESISTI 782


>gi|303271803|ref|XP_003055263.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463237|gb|EEH60515.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 394

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 77/193 (39%), Gaps = 22/193 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              ++VSAT     LE     + + I        +   G+    V +     + +   D+
Sbjct: 195 TQVVLVSATLPVEVLEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL 254

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R G
Sbjct: 255 YDTLTIT-----QAVIFCNTKRKVDWLTEKMRANNFTVSAMHGDMPQKERDAIMGEFRGG 309

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
              VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V I + 
Sbjct: 310 TTRVLITTDVWARGIDVQQVSLVINYD-----LPNNRENYIHRIGRSGRYGRKGVAINFV 364

Query: 691 DTITKSIQLAIDE 703
                 I   I++
Sbjct: 365 KADDVRILRDIEQ 377


>gi|154280893|ref|XP_001541259.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150411438|gb|EDN06826.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 503

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 88/252 (34%), Gaps = 28/252 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     VE I+    +V P +    E+R+  T+   +   + 
Sbjct: 54  QTVLFSATFPRNMEALARKTLAKPVEIIVGGKSVVAPEITQIVEVRNQDTKFVRLLALLG 113

Query: 577 LA----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                   +  R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 114 ELYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKAGV 173

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F +L+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 174 FPILIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 226

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K      P+ V++ +   ++ +       +      
Sbjct: 227 --------LTEDQERYSVDISKALKQSGQPVPEPVQKLVNSFMEKVKAGKEKASGSGFGG 278

Query: 751 QQLSLSKKKGKA 762
           + L    ++  A
Sbjct: 279 KGLERLDQERDA 290


>gi|325271804|ref|ZP_08138271.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324103051|gb|EGC00431.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 396

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 84/260 (32%), Gaps = 34/260 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L +   ++++           Q+  +   +  R     + GF   L S     P  
Sbjct: 84  TPGRLLDLFRQNAV--------KFNQVQTLVLDEADRM---LDLGFAEELQSVYAALP-- 130

Query: 515 FEEWNCLRPTTIVVSATPGSWE-----LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV- 568
                  +  T++ SAT          L     + +E   R          +     +  
Sbjct: 131 ------RKRQTLLFSATFSEQIRLLAGLALSDPLSIEVSPRNAAAASVKQWLVPVDKKRK 184

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           ED++  +    Q+  ++L+   T+   + L   L    +    +H +     R   +   
Sbjct: 185 EDLFCHLM-RKQRWKQVLVFAKTRNGVDQLVARLLAEGVNADGIHGDRPQATRQRALDSF 243

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           +  +  VLV  ++   GLDI +  LV  LD             +  IGR  R  N    I
Sbjct: 244 KAREIQVLVATDVAARGLDIDDLPLVVNLDLPIV-----AEDYVHRIGRTGRAGNKGEAI 298

Query: 688 LYADTITKSIQLAIDETTRR 707
                    +  AI+  TR+
Sbjct: 299 SLVCADEVQLLAAIEVLTRQ 318


>gi|313634128|gb|EFS00790.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL N1-067]
          Length = 526

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 98/256 (38%), Gaps = 16/256 (6%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P     E+         I+   +    +E    +   ++ +D ++    
Sbjct: 179 QTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLD 238

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV 
Sbjct: 239 VQAPELAIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 298

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R       I +        
Sbjct: 299 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGY 353

Query: 698 QLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
              ++ETT++R + L+    ++      +   EKI E +    L D  T    +  +  +
Sbjct: 354 LRIVEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAVTEENLSDYKTYANQLLEKYDA 413

Query: 755 LSKKKGKAHLKSLRKQ 770
                  A LK L K+
Sbjct: 414 TDIA--AAMLKMLAKE 427


>gi|259418826|ref|ZP_05742743.1| putative ATP-dependent RNA helicase RhlE [Silicibacter sp.
           TrichCH4B]
 gi|259345048|gb|EEW56902.1| putative ATP-dependent RNA helicase RhlE [Silicibacter sp.
           TrichCH4B]
          Length = 442

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 13/190 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEI 575
           +  T++ SAT    ++ +     ++  +R    P G     V   +       +    + 
Sbjct: 180 KRQTMLFSAT-MPKQMNEIANAYLKSPVRIEVTPPGKPATKVTQSVHFIAKAEKLSLLKE 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            LA   G R L+   TK   E L + L +   +   +H      +R   ++  + G+  V
Sbjct: 239 LLAKHDGERTLVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKSQGQRERALKAFKSGEITV 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTIT 694
           LV  ++   GLDIP+   V   +           + +  IGR AR   + + + +     
Sbjct: 299 LVATDVAARGLDIPDVKYVYNYE-----LPNVPDAYVHRIGRTARAGKDGQAVAFCAPDE 353

Query: 695 KSIQLAIDET 704
                AI +T
Sbjct: 354 IGDLKAIQKT 363


>gi|254229364|ref|ZP_04922780.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|151938055|gb|EDN56897.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
          Length = 577

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 24/192 (12%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 175 TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 234

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 235 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 289

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-DPILLEDAATTNISIDAQQLSLS 756
              I+  T                 +S  E+I   + D +     A     ++A++   +
Sbjct: 290 LRTIERVT-----------------KSSMEEIQLPLRDQVAEARLAKLGAELEAEKEHKA 332

Query: 757 KKKGKAHLKSLR 768
             K    ++ L+
Sbjct: 333 LDKFAELVEKLQ 344


>gi|67475258|ref|XP_653330.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56470272|gb|EAL47944.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 578

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 12/149 (8%)

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           G  VE I +    V+  ++        E + D +   A +G + ++ V TKR A+ L  Y
Sbjct: 355 GSTVESIQQIILWVEEEIKQ-------EAILDVLGEFAGKGQKTVIFVETKRGADILENY 407

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           LY+   +V  +H +    +R   ++  +     +LV  ++   GLDIP+  +V   D   
Sbjct: 408 LYDHGYKVDSIHGDRSQADRDFSLKRFKENVIQLLVATDVASRGLDIPDIEVVINYDMPN 467

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           E       S +  +GR  R       +  
Sbjct: 468 E-----IESYVHRVGRTGRAGKKGTAITF 491


>gi|270009742|gb|EFA06190.1| hypothetical protein TcasGA2_TC009039 [Tribolium castaneum]
          Length = 808

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 14/171 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVE-DVYDE 574
            T++ SAT  PG   L Q   +   QI      +  T  V   +EI     Q +   +  
Sbjct: 405 QTVMTSATWPPGVRRLAQSYMVDPIQIYVGTLDLAATHTVTQIIEIIPDDDQEKFRTFMN 464

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                    +++     K  A++L+  L    ++ + +H +    +R + + D+  G   
Sbjct: 465 FATNLDPSEKVIAFCGKKARADELSTELTLAGLQCQTIHGDRDQSDREQALLDIADGTVQ 524

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +L+  ++   GLDI +   V   D     F R+    +  +GR  R   S 
Sbjct: 525 ILIATDVASRGLDIDDITHVINYD-----FPRNIEEYVHRVGRTGRAGKSG 570


>gi|256844404|ref|ZP_05549890.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           125-2-CHN]
 gi|256613482|gb|EEU18685.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           125-2-CHN]
          Length = 494

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 13/194 (6%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEI 575
           R  T++ SAT   P     E+         I+   L    +E   +R+  ++  D+   +
Sbjct: 175 RQQTLLFSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRL 234

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L  L+   TKR  ++LT  L  R      +H ++    R+ +++  R GK D+
Sbjct: 235 IDVQGPDL-ALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDI 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   + + + +     
Sbjct: 294 LVATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRTGRAGQNGISVTFVTPNE 348

Query: 695 KSIQLAIDETTRRR 708
                 I++ T+++
Sbjct: 349 IGYMRTIEQLTKKK 362


>gi|158514835|sp|A3LQ01|DED1_PICST RecName: Full=ATP-dependent RNA helicase DED1
          Length = 647

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TKRMA++L ++LY++      +H +    ER + +   + G   +LV   +   
Sbjct: 428 TIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGAAPILVATAVAAR 487

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GLDIP    V   D             +  IGR  R  N  +  
Sbjct: 488 GLDIPNVAHVINYD-----LPSDIDDYVHRIGRTGRAGNVGIAT 526


>gi|150864373|ref|XP_001383156.2| ATP-dependent RNA helicase of DEAD box family [Scheffersomyces
           stipitis CBS 6054]
 gi|149385629|gb|ABN65127.2| ATP-dependent RNA helicase of DEAD box family [Scheffersomyces
           stipitis CBS 6054]
          Length = 616

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TKRMA++L ++LY++      +H +    ER + +   + G   +LV   +   
Sbjct: 397 TIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGAAPILVATAVAAR 456

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GLDIP    V   D             +  IGR  R  N  +  
Sbjct: 457 GLDIPNVAHVINYD-----LPSDIDDYVHRIGRTGRAGNVGIAT 495


>gi|270293148|ref|ZP_06199359.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M143]
 gi|270279127|gb|EFA24973.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M143]
          Length = 520

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 77/200 (38%), Gaps = 16/200 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV 
Sbjct: 236 VEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R   S   I +        
Sbjct: 296 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGY 350

Query: 698 QLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
              I+  T++R K       +     K  +  + ++    + +     E  A     + A
Sbjct: 351 LQIIENLTKKRMKGLKPATAEEAFQAKKQVALKKIERDFADEVIRGNFEKFAKDARKLAA 410

Query: 751 QQLSLSKKKGKAHLKSLRKQ 770
           +    S ++   ++ SL  Q
Sbjct: 411 EF---SPEELAMYILSLTVQ 427


>gi|242069035|ref|XP_002449794.1| hypothetical protein SORBIDRAFT_05g023460 [Sorghum bicolor]
 gi|241935637|gb|EES08782.1| hypothetical protein SORBIDRAFT_05g023460 [Sorghum bicolor]
          Length = 437

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 69/191 (36%), Gaps = 17/191 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYD 573
              T++ SAT    E+++     ++  I          T L+   VE      +   + D
Sbjct: 158 VRQTMLFSAT-FPKEIQKMASDFLDNYIFLAVGRVGSSTDLIAQRVEFVQEADKRSHLMD 216

Query: 574 EINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            ++     G     L+ V TKR A+ L  +L         +H +    ER   +R  + G
Sbjct: 217 LLHAQRDTGKPTLTLVFVETKRGADSLESWLCMNGFPATSIHGDRNQQEREYALRSFKSG 276

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYA 690
           +  +LV  ++   GLDIP    V   D             +  IGR  R   S     + 
Sbjct: 277 QTPILVATDVAARGLDIPLVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKSGLATAFF 331

Query: 691 DTITKSIQLAI 701
           +    S+  ++
Sbjct: 332 NDNNSSLARSL 342


>gi|170071047|ref|XP_001869798.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167866996|gb|EDS30379.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 222

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 6/121 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR  + LTE + E N  V  MH ++   ER EI+++ R G+  VL+  ++  
Sbjct: 90  QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRSGQSRVLITTDVWA 149

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
            G+D+ +  LV   D        ++   I  IGR+ R     V I +  +    I   I+
Sbjct: 150 RGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 204

Query: 703 E 703
           +
Sbjct: 205 Q 205


>gi|156375300|ref|XP_001630019.1| predicted protein [Nematostella vectensis]
 gi|156217032|gb|EDO37956.1| predicted protein [Nematostella vectensis]
          Length = 411

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 5/123 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   + +  + +TE L +       +HSE     R ++++  R GK D+LV  ++   
Sbjct: 289 VIVFTSSIQNVDYVTELLKQEQFHASGLHSEKPQDYRFKLVKAFRDGKVDILVATDVASR 348

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD PE   V   D        +    I   GR  R  +  +     T+   I   + E 
Sbjct: 349 GLDFPEVTHVINYD-----LPDTIECYIHRCGRTGRIGHHGIATSFLTLDCKIAEELKEM 403

Query: 705 TRR 707
             R
Sbjct: 404 LER 406


>gi|37748194|gb|AAH59237.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
          Length = 851

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 97/254 (38%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W         +     V+ I + T      VE  + +    +    + 
Sbjct: 441 PQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIG 500

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++    +    + +H ++   +R   ++  R G 
Sbjct: 501 DVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFRNGN 559

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 560 FGVLVATNVAARGLDIPEVDLVVQSCPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 614

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QLA          Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 615 NKEEYQLA----------QVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 662

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 663 ISHFKQSAEKLIEE 676


>gi|84998580|ref|XP_954011.1| eukaryotic translation initiation factor [Theileria annulata]
 gi|65305009|emb|CAI73334.1| eukaryotic translation initiation factor, putative [Theileria
           annulata]
          Length = 394

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 73/189 (38%), Gaps = 16/189 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
             ++VSAT     +E     +            +   G+    + +   + + + + D  
Sbjct: 196 QVVLVSATLPHDVIEITNKFMNNPFKVLVKRDELTLEGIKQFFISVEKEQWKFDTLCDLY 255

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   + ++   TK   + L + + + N  V  MH E+   ER +I++  R G+  V
Sbjct: 256 ESLIIT--QAVIFCNTKEKVDWLAKKMKDANFEVSKMHGEMSQKERNDIMQRFRKGESRV 313

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           L+  +L   GLD+ +  LV   D        S+ S I  IGR+ R     V I +     
Sbjct: 314 LISTDLWGRGLDVQQVSLVVNYD-----LPNSRESYIHRIGRSGRYGRKGVAINFVKDDD 368

Query: 695 KSIQLAIDE 703
             I   I++
Sbjct: 369 IRILRDIEQ 377


>gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 536

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 73/199 (36%), Gaps = 19/199 (9%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TKR  ++L E L +R      +H ++   +R  ++R  R G  DVLV  ++   
Sbjct: 243 AIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVATDVAAR 302

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D       +   S +  IGR  R         +           I+ 
Sbjct: 303 GLDVSGVTHVVNFD-----LPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFIER 357

Query: 704 TTRRR-------EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
            TR R               K  I    + E+++E+I+   L +     I +  Q  S+ 
Sbjct: 358 VTRHRIPRKPLPTIAEAIEGKQRI----IAERVLEIIEQGELTEYKGLAIQLLEQYDSV- 412

Query: 757 KKKGKAHLKSLRKQMHLAA 775
            +   A +K L      A+
Sbjct: 413 -QLLAAAMKILTGDKKEAS 430


>gi|196015847|ref|XP_002117779.1| hypothetical protein TRIADDRAFT_51106 [Trichoplax adhaerens]
 gi|190579664|gb|EDV19755.1| hypothetical protein TRIADDRAFT_51106 [Trichoplax adhaerens]
          Length = 569

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 17/212 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            + + GF      D R + F  +   R  T++ SAT         +  +V  +    G  
Sbjct: 295 RMIDMGFE----EDMRTV-FSYFKAQR-QTLLFSATMPKKIQNFAKSALVRPVTVNVGRA 348

Query: 555 ----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + Q   +   +    + G  +L+    K+  +D+ EYL  + +   
Sbjct: 349 GAANLDVIQEVEYVK-QEAKIVYLLECLQKTGPPVLIFAEKKKDVDDIHEYLLLKGVEAV 407

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER   I   +L K DVL+  ++  +GLD P+   V   D           +
Sbjct: 408 AIHGGKDQEEREFAITSFKLSKKDVLIATDVASKGLDFPDVKHVINYD-----MPEDIEN 462

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            +  IGR  R   + +       + S  + +D
Sbjct: 463 YVHRIGRTGRCGKTGLATTFINKSSSEYVLLD 494


>gi|47086809|ref|NP_997777.1| probable ATP-dependent RNA helicase DDX5 [Danio rerio]
 gi|37362204|gb|AAQ91230.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Danio rerio]
          Length = 518

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 82/212 (38%), Gaps = 21/212 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-----PPVEIRSA--RTQVEDVYDEIN 576
            T++ SAT      +  +  + E I    G +        ++I       + ED    + 
Sbjct: 276 QTLMWSATWPKEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRLL 335

Query: 577 LAA--QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                ++  + ++ V TKR  +DLT  +         +H +    ER  ++ + + GK  
Sbjct: 336 EEIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAP 395

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+  ++   GLD+ +   V   D     +  +    I  IGR AR+  +    Y     
Sbjct: 396 ILIATDVASRGLDVEDVKFVINFD-----YPNNSEDYIHRIGRTARSQKTGTA-YTFFTP 449

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
            +++ A D  +  RE          INP+ ++
Sbjct: 450 NNMKQAHDLVSVLREAHQA------INPKLIQ 475


>gi|113969711|ref|YP_733504.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113884395|gb|ABI38447.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 427

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 86/263 (32%), Gaps = 34/263 (12%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPT--GLVDPPVEIRSARTQVEDVYDEINLAA 579
           +  T++ SAT    E+      ++ Q +        +  +E R      E     +    
Sbjct: 190 KKQTLLYSAT-FPEEVRALTAKLLHQPLEYHLQSEQESTIEQRVITVNREQKTALLAHLI 248

Query: 580 QQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +Q    + L+ V  K     L + L +R I     H +     R  ++   + G   VL+
Sbjct: 249 KQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKSGDISVLI 308

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   G+DI +  +V   D       RS    +  IGR+ R   + + +   +  +  
Sbjct: 309 ATDIAARGIDIDKLPVVINFD-----LPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYH 363

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
              + E            KK+ I      +   E +            +    +  +  +
Sbjct: 364 HFGVIE------------KKNKI------KLEREQVPGFEANAEMPLEVLAQEKPQAKPE 405

Query: 758 KKGKAHLKSLRKQMHLAADNLNF 780
             GK   K L       A NL F
Sbjct: 406 GTGKKKRKQL------PAANLEF 422


>gi|270003649|gb|EFA00097.1| hypothetical protein TcasGA2_TC002912 [Tribolium castaneum]
          Length = 557

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 11/139 (7%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    Q + V   +         +L+ V +K  A+ L   L    I V  +H++   L+
Sbjct: 322 VRITVGQRDLVKKGLTPP------VLVFVQSKDRAQQLFNELIYDGINVDAIHADRTQLQ 375

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R   +R  R G+  VL+   L+  G+D     LV   D     F  S  S +  +GRA R
Sbjct: 376 RDNTVRSFREGRIWVLICTELMARGIDFKGVNLVINYD-----FPPSAISYVHRVGRAGR 430

Query: 681 NVNSKVILYADTITKSIQL 699
              +   +   T+  ++ L
Sbjct: 431 AGRTGKAITFFTVENTVNL 449


>gi|255261539|ref|ZP_05340881.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
 gi|255103874|gb|EET46548.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
          Length = 446

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 69/202 (34%), Gaps = 36/202 (17%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS---ARTQVEDVYDEINLA-- 578
            T++ SAT    ++ +     +   +R        VE+     A  ++E     I  +  
Sbjct: 181 QTMLFSAT-MPKQMNELAAAYLRSPVR--------VEVNPPGKAADKIEQSLHYIAKSEK 231

Query: 579 ---------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                      +G R ++   TK   E L + L +       +H      +R   I   R
Sbjct: 232 PKLLIELLGKHKGERAIVFGRTKHGCEKLYKTLEKAGFDAVSIHGNKSQGQRERAIVAFR 291

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GK  VLV  ++   GLDIP+   V   D           + +  IGR AR     + + 
Sbjct: 292 EGKVTVLVATDVAARGLDIPDVKHVYNFD-----LPNVPENYVHRIGRTARAGAEGMAIA 346

Query: 690 ADTITKSIQLAIDETTRRREKQ 711
                     A DE +  R  Q
Sbjct: 347 FC--------APDEMSELRSIQ 360


>gi|170578338|ref|XP_001894368.1| ATP-dependent helicase DDX48 [Brugia malayi]
 gi|158599081|gb|EDP36794.1| ATP-dependent helicase DDX48, putative [Brugia malayi]
          Length = 399

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             +++SAT     LE     + + I        +   G+    V +     + +   D+Y
Sbjct: 206 QVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLCDLY 265

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   T+R  + L E L E N  V  MH E++  ER  I+++ R G 
Sbjct: 266 DTLTIT-----QAVIFCNTRRKVDWLAEKLKEANFTVSSMHGEMEQKERDAIMKEFRGGA 320

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             +L+  ++   GLDIP+  LV   D        ++   I  IGR+ R     V I +  
Sbjct: 321 SRLLISTDVFARGLDIPQVSLVVNYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVK 375

Query: 692 TITKSIQLAIDE 703
           +    I   I++
Sbjct: 376 SDDIRILRDIEQ 387


>gi|154490238|ref|ZP_02030499.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC
           43184]
 gi|154089130|gb|EDN88174.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC
           43184]
          Length = 427

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 79/195 (40%), Gaps = 29/195 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       E I++   +     ++R     +ED
Sbjct: 182 QTIMFSATMPPKIRTLAQTILKNPEEVKIAISRPPETIMQTAYVCYDMQKLRI----LED 237

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           ++        +  R+++   +K   ++L   L      V  MHS+++  +R E++++ + 
Sbjct: 238 LFS-----KSRPQRVIIFSSSKMKVKELASTLKRMKFNVAAMHSDLEQSQREEVMKEFKN 292

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVIL 688
           G+ D+LV  +++  G+DI +  LV   D             +  IGR AR  N     I 
Sbjct: 293 GRIDILVATDVVSRGIDINDIKLVINFD-----IPHDPEDYVHRIGRTARGTNGEGLAIT 347

Query: 689 YADTITKSIQLAIDE 703
           +  T  +     I+E
Sbjct: 348 FISTEEQFQFKRIEE 362


>gi|85095256|ref|XP_960042.1| hypothetical protein NCU05782 [Neurospora crassa OR74A]
 gi|74615933|sp|Q7S5R1|DBP3_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-3
 gi|28921501|gb|EAA30806.1| hypothetical protein NCU05782 [Neurospora crassa OR74A]
          Length = 614

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 9/162 (5%)

Query: 549 IRPTGLVDPPVEIRSARTQ---VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           ++    ++  VE+   R +   + ++  E    +Q+  RIL+  L K+ A  + ++L  +
Sbjct: 414 LQANSRIEQKVEVVDPRGKEFRLYELLKEAQKGSQKDDRILVFCLYKKEAVRVEQFLSRK 473

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            I+V  +H +++  +R   +   + G   VLV  ++   GLDIPE  LV  +      F 
Sbjct: 474 GIKVASIHGDLRQDQRTRSLEAFKSGTTTVLVATDVAARGLDIPEVKLVINV-----TFP 528

Query: 666 RSKTSLIQTIGRAARNVN-SKVILYADTITKSIQLAIDETTR 706
            +    +  IGR  R     K I       K+   ++    R
Sbjct: 529 LTIEDYVHRIGRTGRAGKLGKAITLFTEHDKAHSGSLVNILR 570


>gi|254466325|ref|ZP_05079736.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
 gi|206687233|gb|EDZ47715.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
          Length = 467

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 104/328 (31%), Gaps = 41/328 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++     LL       T  QI  +   D      + + GF  P       L   
Sbjct: 130 TPGRLLDHFERGKLLL------TGVQIMVVDEADR-----MLDMGFI-PDIERIFSLTP- 176

Query: 517 EWNCLRPTTIVVSATPGSWELEQ---------CQGIIVEQIIRPTGLVDPPVEIRSAR-- 565
                   T+  SAT    E+E+          +  +  Q      +    V+++ +R  
Sbjct: 177 ----FTRQTLFFSATMAP-EIERITNTFLSGPARIEVARQATASETIEQAVVQVKPSRRD 231

Query: 566 ----TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
                +   +   I+    +    ++    K   +   + L +       +H ++   +R
Sbjct: 232 REGSEKRTVLRALIDGEGDKLTNGIIFCNRKTDVDICAKSLKKYGYDAAAIHGDLDQSQR 291

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
              +   R G   +LV  ++   GLD+P    V   D             +  IGR  R 
Sbjct: 292 TRTLDSFREGSLRILVASDVAARGLDVPSVSHVFNFDVPG-----HAEDYVHRIGRTGRA 346

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
                 +   T     + A+D   +  +K ++   ++ + P+ V+EK      P   +  
Sbjct: 347 GREGKAITICTPRD--EKALDAVEKLIQKDIKR-LENPVKPEPVQEKPSRSAKPDAAKPD 403

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRK 769
                +  A   S + +K     +   +
Sbjct: 404 TAKQDTAKADTGSRAPRKEDKAAQKPER 431


>gi|26368308|dbj|BAB26817.2| unnamed protein product [Mus musculus]
          Length = 832

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 97/254 (38%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W         +     V+ I + T      VE  + +    +    + 
Sbjct: 422 PQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIG 481

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++    +    + +H ++   +R   ++  R G 
Sbjct: 482 DVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFRNGN 540

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 541 FGVLVATNVAARGLDIPEVDLVVQSCPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 595

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QLA          Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 596 NKEEYQLA----------QVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 643

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 644 ISHFKQSAEKLIEE 657


>gi|146276411|ref|YP_001166570.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145554652|gb|ABP69265.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 453

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 82/239 (34%), Gaps = 31/239 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L + +  ++++     ++ + +              + + GF       +   +  
Sbjct: 140 TPGRLIDLLDRNAVVLDHTGYLVLDEAD-----------QMLDMGFI------HSLRKIA 182

Query: 517 EWNCLRPTTIVVSAT--PGSWELEQC--QGIIVEQIIRPTGLVDPP---VEIRSARTQVE 569
            +  L+  T++ SAT      EL     +  +  Q+  P   V+     V       + +
Sbjct: 183 RFLPLKRQTLLFSATMPKLIEELAHTFLREPVRVQVAPPGKPVEKIAQGVHFIPQGDKAK 242

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   +      G + L+   TK  +E L + L     +   +H      +R   + + R
Sbjct: 243 LLESYLL--KHPGEQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFR 300

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G  DVLV  ++   G+DIP    V   D           + +  IGR AR       +
Sbjct: 301 DGTLDVLVATDVAARGIDIPGVRHVYNYD-----MPNVPENYVHRIGRTARAGAEGSAV 354


>gi|256113603|ref|ZP_05454423.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 535

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 232 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 281

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 282 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 341

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 342 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 401

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 402 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 451


>gi|71907449|ref|YP_285036.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71847070|gb|AAZ46566.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 447

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 84/252 (33%), Gaps = 28/252 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   ++++           Q+  +   +  R     + GF      +   L   
Sbjct: 131 TPGRLIDLFTQNAI--------KFKQVQTLVLDEADRM---LDLGF----AHELDTLFAA 175

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII-----VEQIIRPTGLVDPPVEIRSARTQVEDV 571
                +  T++ SAT         +G +     +E   R + +      +     + +  
Sbjct: 176 L--PRKRQTLLFSATFSDEIRSLAKGRLRDPLSIEVAPRNSTVKAIKQWVVPVDKKRKTE 233

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                   ++  ++L+ V T+R  ++L   L  + I+   +H +     R+  +   + G
Sbjct: 234 LFLFMRKDRKWGQVLVFVKTRRGVDELVATLLAKKIKADAIHGDKPQPARLRALESFKAG 293

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYA 690
           +  +LV  ++   GLDI +   V   D             I  IGR  R   +   I   
Sbjct: 294 EVQILVATDVAARGLDIDDLPQVVNYDLPIV-----AEDYIHRIGRTGRAGATGQAISLV 348

Query: 691 DTITKSIQLAID 702
                 +  AI+
Sbjct: 349 CADEAPLLAAIE 360


>gi|326469786|gb|EGD93795.1| DEAD/DEAH box helicase [Trichophyton tonsurans CBS 112818]
          Length = 654

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 7/129 (5%)

Query: 578 AAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            ++ G R   L+  +      DLT    E  +  RY+  +     R++ +   R  +F V
Sbjct: 288 RSKAGERKSTLVFCVDIAHVRDLTAKFREIGVDARYITGQTPKDVRVKELEAFRNYEFPV 347

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   L  EG DIP    V +    +     SK  LIQ IGR  R    K   +   +  
Sbjct: 348 LVNCGLFTEGTDIPNIDCVLLARPTR-----SKNLLIQMIGRGLRLHPDKTNCHIIDMVA 402

Query: 696 SIQLAIDET 704
           S+   +  T
Sbjct: 403 SLNCGVLTT 411



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP------AIVMAPNKILA 206
           Q   I  +L  + +  K   +   TGSGKT    ++I  +  P      ++++   K L 
Sbjct: 56  QEECIQSVLSHLDAGHKRLGVSLATGSGKTVIFTQLIGRVNPPDHKRSQSLILVHRKELV 115

Query: 207 AQLYSEFKNFFPHNAVE 223
            Q        +P   +E
Sbjct: 116 EQAAEHCTRAYPDKTIE 132


>gi|282158103|ref|NP_001164095.1| ATP-dependent RNA helicase p62 [Tribolium castaneum]
          Length = 549

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 95/259 (36%), Gaps = 38/259 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ + +          + + + +   +  R     + GF         P   +
Sbjct: 243 TPGRLIDFLEKGTT--------NLQRCTYLVLDEADRM---LDMGFE--------PQIRK 283

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEI---RS 563
               +RP   T++ SAT      +  Q  +   +    G +           V++     
Sbjct: 284 IIEQIRPDRQTLMWSATWPKEVRKLAQDFLRNYVQINIGSLQLSANHNILQIVDVCQEHE 343

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
             T++ ++  EI    + G +I++ V TK+  E +T  +         MH +    ER  
Sbjct: 344 KETKLNNLLQEIGNNGEPGAKIIIFVETKKKVESITRTIRRYGWPAVCMHGDKSQQERDF 403

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++R+ R GK  +L+  ++   GLD+     V   D     +  S    I  IGR  R+  
Sbjct: 404 VLREFRNGKSSILIATDVAARGLDVEGIKYVINYD-----YPNSSEDYIHRIGRTGRSDT 458

Query: 684 SKVILYADTITKSIQLAID 702
           +    YA     + + A D
Sbjct: 459 TGT-SYAFFTPSNFRQAKD 476


>gi|259500990|ref|ZP_05743892.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners DSM 13335]
 gi|302190561|ref|ZP_07266815.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus iners AB-1]
 gi|309803755|ref|ZP_07697841.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 11V1-d]
 gi|309804668|ref|ZP_07698733.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 09V1-c]
 gi|309806978|ref|ZP_07700960.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 03V1-b]
 gi|309808565|ref|ZP_07702461.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 01V1-a]
 gi|309809614|ref|ZP_07703471.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           2503V10-D]
 gi|312871555|ref|ZP_07731648.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           3008A-a]
 gi|312872588|ref|ZP_07732656.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2062A-h1]
 gi|312874281|ref|ZP_07734313.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2052A-d]
 gi|312874733|ref|ZP_07734752.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2053A-b]
 gi|315653950|ref|ZP_07906866.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners ATCC 55195]
 gi|325912398|ref|ZP_08174793.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           143-D]
 gi|325913097|ref|ZP_08175467.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           60-B]
 gi|329920540|ref|ZP_08277272.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           1401G]
 gi|259167684|gb|EEW52179.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners DSM 13335]
 gi|308164164|gb|EFO66425.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 11V1-d]
 gi|308166060|gb|EFO68278.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 09V1-c]
 gi|308166598|gb|EFO68795.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 03V1-b]
 gi|308168193|gb|EFO70315.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 01V1-a]
 gi|308170095|gb|EFO72131.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           2503V10-D]
 gi|311089478|gb|EFQ47903.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2053A-b]
 gi|311090154|gb|EFQ48566.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2052A-d]
 gi|311091950|gb|EFQ50326.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092950|gb|EFQ51301.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           3008A-a]
 gi|315488646|gb|EFU78292.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners ATCC 55195]
 gi|325475740|gb|EGC78911.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           143-D]
 gi|325477518|gb|EGC80660.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           60-B]
 gi|328936216|gb|EGG32669.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           1401G]
          Length = 487

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 101/273 (36%), Gaps = 31/273 (11%)

Query: 518 WNCLRPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDV 571
           +      T++ SAT   P     E+         I+   L    ++   +R    +  D+
Sbjct: 170 FASNDHQTLLFSATMPKPILQIGEKFMHDPQIVQIKSKELTANLIDQYFVRLKENEKFDI 229

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
              +    Q     ++   TKR  ++LT     R      +H ++   +R+ +++  + G
Sbjct: 230 LCRLID-VQDPELSVVFGRTKRRVDELTRGFQARGYDAAGIHGDLTQTKRMSVLKRFKQG 288

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYA 690
           K D+LV  ++   GLDI     V   D       +   S +  IGR  R   N   I + 
Sbjct: 289 KLDILVATDVAARGLDISGVSHVYNYD-----IPQDPDSYVHRIGRTGRAGKNGMSITFV 343

Query: 691 DTITKSIQLAIDETTRRRE-------KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743
                     I+  TR++         +   + + +I      +KI E++D  L      
Sbjct: 344 TPNEIGYMKTIERLTRKKMTPLRPPSDKEAFDGQLSI----ANKKIQELLDSDL------ 393

Query: 744 TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
           T  + +A++L  +       + +L K M   A+
Sbjct: 394 TKYTKEAEKLLENNSALD-LVAALLKDMAKDAE 425


>gi|254704340|ref|ZP_05166168.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|260566411|ref|ZP_05836881.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|260155929|gb|EEW91009.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
          Length = 503

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 232 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 281

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 282 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 341

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 342 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 401

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 402 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 451


>gi|74211590|dbj|BAE26522.1| unnamed protein product [Mus musculus]
          Length = 851

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 97/254 (38%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W         +     V+ I + T      VE  + +    +    + 
Sbjct: 441 PQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIG 500

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++    +    + +H ++   +R   ++  R G 
Sbjct: 501 DVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFRNGN 559

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 560 FGVLVATNVAARGLDIPEVDLVVQSCPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 614

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QLA          Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 615 NKEEYQLA----------QVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 662

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 663 ISHFKQSAEKLIEE 676


>gi|296807861|ref|XP_002844269.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Arthroderma
           otae CBS 113480]
 gi|238843752|gb|EEQ33414.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Arthroderma
           otae CBS 113480]
          Length = 1183

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 87/252 (34%), Gaps = 28/252 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     VE I+    +V P +    E+R+   +   + + + 
Sbjct: 733 QTVLFSATFPRNMEALARKTLSKPVEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLELLG 792

Query: 577 LAAQQGL----RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 793 NLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKAGI 852

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F +L+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 853 FPILIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 905

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K      P+ +++ +   +D +       +      
Sbjct: 906 --------LTEDQERYSVDISKALKQSGQPVPEPIQKMVTAFLDKVKEGKEKASGSGFGG 957

Query: 751 QQLSLSKKKGKA 762
           + L    ++  A
Sbjct: 958 KGLERLDQERDA 969


>gi|72384374|ref|NP_062426.2| nucleolar RNA helicase 2 [Mus musculus]
 gi|74213643|dbj|BAE35625.1| unnamed protein product [Mus musculus]
 gi|112180476|gb|AAH43655.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
 gi|148700139|gb|EDL32086.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Mus
           musculus]
          Length = 851

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 97/254 (38%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W         +     V+ I + T      VE  + +    +    + 
Sbjct: 441 PQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIG 500

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++    +    + +H ++   +R   ++  R G 
Sbjct: 501 DVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFRNGN 559

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 560 FGVLVATNVAARGLDIPEVDLVVQSCPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 614

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QLA          Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 615 NKEEYQLA----------QVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 662

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 663 ISHFKQSAEKLIEE 676


>gi|325180080|emb|CCA14481.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 594

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 5/112 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            LL V  K   ++L + L    I V  +H++   ++R +++R+ R GK  VL+  +L+  
Sbjct: 411 ALLFVQNKERVDELYQELLYDGIHVGAIHADRSQMQRDQVLREFRAGKIWVLICTDLICR 470

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           GLD     +V   D     F +S  S I  IGR  RN      +   T    
Sbjct: 471 GLDFKAVNMVINYD-----FPQSAISYIHRIGRTGRNGRKGFAVTFFTERDM 517


>gi|312081503|ref|XP_003143055.1| ATP-dependent helicase DDX48 [Loa loa]
 gi|307761780|gb|EFO21014.1| ATP-dependent helicase DDX48 [Loa loa]
          Length = 399

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             +++SAT     LE     + + I        +   G+    V +     + +   D+Y
Sbjct: 206 QVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLCDLY 265

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   T+R  + L E L E N  V  MH E++  ER  I+++ R G 
Sbjct: 266 DTLTIT-----QAVIFCNTRRKVDWLAEKLKEANFTVSSMHGEMEQKERDAIMKEFRGGA 320

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             +L+  ++   GLDIP+  LV   D        ++   I  IGR+ R     V I +  
Sbjct: 321 SRLLISTDVFARGLDIPQVSLVVNYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVK 375

Query: 692 TITKSIQLAIDE 703
           +    I   I++
Sbjct: 376 SDDIRILRDIEQ 387


>gi|145245621|ref|XP_001395078.1| ATP-dependent RNA helicase dhh1 [Aspergillus niger CBS 513.88]
 gi|142981121|sp|A2QY39|DHH1_ASPNC RecName: Full=ATP-dependent RNA helicase dhh1
 gi|134079784|emb|CAK40919.1| unnamed protein product [Aspergillus niger]
          Length = 505

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 86/263 (32%), Gaps = 32/263 (12%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 215 SFHPKDRQVMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVH- 273

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 274 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNR 325

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 326 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 380

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQ-LEHNKKHNI----NPQSVKEKIMEVIDPILL 738
             + +          L   E     E Q +  N    +    +P ++   I     P + 
Sbjct: 381 LGLAINLINWEDRFNLYKIEQELGTEIQPIPQNIDKKLYVYDSPDTIPRPIANPSQPQIT 440

Query: 739 EDAATTNISIDAQQLSLSKKKGK 761
             AA  NI        ++  + +
Sbjct: 441 AQAANANIGERRHNHHMNGGQYQ 463


>gi|114775697|ref|ZP_01451265.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
           PV-1]
 gi|114553808|gb|EAU56189.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
           PV-1]
          Length = 628

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 92/211 (43%), Gaps = 12/211 (5%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           + S R +++ +   +      G  +++ V TK   +++ E L  R      ++ +VK  +
Sbjct: 225 MVSGRNKIDALTRILEFEPFDG--MIIFVRTKTATDEVAERLEARGYAASALNGDVKQSQ 282

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R +I+  L+ GK D++V  ++   GLD+     V   D           S +  IGR  R
Sbjct: 283 REQIVNRLKSGKIDIVVATDVAARGLDVERISHVINYD-----IPHDTESYVHRIGRTGR 337

Query: 681 NVNSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIMEVIDPI 736
                  IL+     K +  +I++ T +R +QLE     +IN   +   K++I + +   
Sbjct: 338 AGRKGDAILFVAPREKRMLYSIEKATNQRVEQLEMPTTEDINNLRIADFKQRISDTLAAD 397

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSL 767
            LE  A      + Q+ ++  ++  A L  L
Sbjct: 398 GLELFAGIVEQYE-QEHNVPAQEIAAALAFL 427


>gi|157106194|ref|XP_001649211.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108879905|gb|EAT44130.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 625

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 8/133 (6%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           V+    R+ + D+   I    +   +    L+ V TK+ A+ L E+LY  N  V  +H +
Sbjct: 401 VDENDKRSHLLDLLSNIKAQNEGDEKDCLTLIFVETKKSADSLEEFLYHYNHPVTSIHGD 460

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
               ER + ++  R G+  VLV   +   GLDIP    V   D   E         +  I
Sbjct: 461 RTQKEREDALKCFRSGRCPVLVATAVAARGLDIPNVKHVINFDLPAE-----IEEYVHRI 515

Query: 676 GRAARNVNSKVIL 688
           GR  R  N  +  
Sbjct: 516 GRTGRMGNLGIAT 528


>gi|89092720|ref|ZP_01165673.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89083232|gb|EAR62451.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 427

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/319 (17%), Positives = 111/319 (34%), Gaps = 40/319 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         + +  +++ ++  +   +  R     + GF  P        +  
Sbjct: 133 TPGRLLD--------LLRQKAISLEKLEYLVLDEADRM---LDLGFIDPIQ------KIM 175

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQI--IRPTGLVDPPVEIRSARTQVE----- 569
           ++      T++ +AT     +E      +     I+ T       +IR    QV+     
Sbjct: 176 DYAADDRQTLLFTAT-ADESVEVLAEFYLNNPTKIKVTPRNSTAKQIRQFAYQVDYGQKA 234

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+   +    + G   L+ V TK+  ++LT+YL +  I    +H E    ER+ ++ +  
Sbjct: 235 DILSYLITEGKWGQ-TLVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFI 293

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  ++   GLDI     V   D           + +  IGR  R   +   + 
Sbjct: 294 AGDLHVLVATDVAARGLDIESLPYVVNYD-----LPNQPEAYVHRIGRTGRAGETGEAVS 348

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ---SVKEKIMEVIDPILLEDAATTNI 746
                +       E  +R EK ++   K    P+     + +I +  D  +    A    
Sbjct: 349 LVAPAER------EFLQRIEKLIKQKIKLRPVPRIEDGKRLEIDDFADKPMKRKPAKAKQ 402

Query: 747 SIDAQQLSLSKKKGKAHLK 765
               +  S    K K  ++
Sbjct: 403 QKRKKVESYQPDKSKKAIR 421


>gi|315050970|ref|XP_003174859.1| DEAD box family helicase [Arthroderma gypseum CBS 118893]
 gi|311340174|gb|EFQ99376.1| DEAD box family helicase [Arthroderma gypseum CBS 118893]
          Length = 654

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 7/129 (5%)

Query: 578 AAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            ++ G R   L+  +      DLT    E  +  RY+  +     R + +   R  +F V
Sbjct: 288 RSKAGERKSTLVFCVDIAHVRDLTAKFREFGVDARYITGQTPKDVRAKELEAFRNYEFPV 347

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   L  EG DIP    V +    +     SK  LIQ IGR  R    K   +   +  
Sbjct: 348 LVNCGLFTEGTDIPNIDCVLLARPTR-----SKNLLIQMIGRGLRLHPDKANCHIIDMVA 402

Query: 696 SIQLAIDET 704
           S+   +  T
Sbjct: 403 SLNCGVLTT 411


>gi|297736780|emb|CBI25981.3| unnamed protein product [Vitis vinifera]
          Length = 347

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 18/174 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP---------VEIR-SARTQVEDV 571
           R  T++ +AT      +    ++V  +    G VD           VE+      Q    
Sbjct: 168 RRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVSPPEKQRR-- 225

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            ++I  + ++G ++++   TK++ + L      RN     +H +   +ER  ++   R G
Sbjct: 226 LEQILRSQERGSKVIIFCSTKKLCDQLARS-IGRNFGAAVIHGDKSQVERDWVLNQFRSG 284

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           K  +LV  ++   GLDI +  +V   D     F       +  IGR  R   + 
Sbjct: 285 KSPILVATDVAARGLDIKDIRVVINYD-----FPTGIEDYVHRIGRTGRAGATG 333


>gi|295689524|ref|YP_003593217.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295431427|gb|ADG10599.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
           21756]
          Length = 524

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 79/250 (31%), Gaps = 34/250 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++     LL       T  Q   +   D      + + GF         P    
Sbjct: 130 TPGRLLDHFERGKLLM------TGVQFLVVDEADR-----MLDMGFI--------PDIER 170

Query: 517 EWNCL--RPTTIVVSATPGSWELEQCQGIIVE----QIIRPT----GLVDPPVEIRSART 566
            +     +  T+  SAT         +  + +    ++ RP      +    V++ S+  
Sbjct: 171 IFKMTPPKKQTLFFSATMPPEITRLTKQFLRDPVRIEVARPATTNANITQLLVKVPSSDP 230

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +     +   Q    ++    K   + + + L         +H ++   +R++ + 
Sbjct: 231 KAKRLALRALIEKAQIETGIVFCNRKTEVDIVAKSLKVHGYDAAPIHGDLDQTQRMKTLA 290

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D R G   +LV  ++   GLDIP    V   D             +  IGR  R   + +
Sbjct: 291 DFRSGALKILVASDVAARGLDIPAVSHVFNYDV-----PHHADDYVHRIGRTGRAGRTGI 345

Query: 687 ILYADTITKS 696
                T    
Sbjct: 346 TYMLVTPADD 355


>gi|262047224|ref|ZP_06020182.1| helicase [Lactobacillus crispatus MV-3A-US]
 gi|260572469|gb|EEX29031.1| helicase [Lactobacillus crispatus MV-3A-US]
          Length = 494

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 13/194 (6%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEI 575
           R  T++ SAT   P     E+         I+   L    +E   +R+  ++  D+   +
Sbjct: 175 RQQTLLFSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRL 234

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L  L+   TKR  ++LT  L  R      +H ++    R+ +++  R GK D+
Sbjct: 235 IDVQGPDL-ALVFGRTKRRVDELTRGLQARGYNAAEIHGDLSQARRMSVLKRFREGKLDI 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   + + + +     
Sbjct: 294 LVATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRTGRAGQNGISVTFVTPNE 348

Query: 695 KSIQLAIDETTRRR 708
                 I++ T+++
Sbjct: 349 IGYMRTIEQLTKKK 362


>gi|217968880|ref|YP_002354114.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|217506207|gb|ACK53218.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 441

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 24/195 (12%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           +  T++ SAT     L+   G +  ++ R    ++  V     R Q+E      +    +
Sbjct: 179 KRQTLLFSAT-----LDGVVGSMATRMTRDAERIEIEVAQED-RGQIEQRLMFADDLGHK 232

Query: 582 G------------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                         + ++   TKR A++L+  L E+ I    +H ++   +R   +  LR
Sbjct: 233 SRLLHALLGEDGMNQAVVFTATKRSADELSLALQEKGISAAALHGDMHQTQRNRTLDRLR 292

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+  VLV  ++   G+D+     V   D  ++         +  IGR  R     + + 
Sbjct: 293 QGRIGVLVATDVAARGIDVAGISHVINFDPPRQ-----AEDYVHRIGRTGRAGRDGIAIT 347

Query: 690 ADTITKS-IQLAIDE 703
                ++ +  AI+ 
Sbjct: 348 LSGPRETGLIRAIER 362


>gi|62289973|ref|YP_221766.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699901|ref|YP_414475.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
 gi|189024215|ref|YP_001934983.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|254689280|ref|ZP_05152534.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 6 str. 870]
 gi|254693764|ref|ZP_05155592.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 3 str. Tulya]
 gi|254697417|ref|ZP_05159245.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730315|ref|ZP_05188893.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 4 str. 292]
 gi|256257530|ref|ZP_05463066.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 9 str. C68]
 gi|297248372|ref|ZP_06932090.1| ATP-dependent helicase [Brucella abortus bv. 5 str. B3196]
 gi|62196105|gb|AAX74405.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616002|emb|CAJ11028.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Brucella melitensis biovar Abortus 2308]
 gi|189019787|gb|ACD72509.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|297175541|gb|EFH34888.1| ATP-dependent helicase [Brucella abortus bv. 5 str. B3196]
          Length = 531

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 232 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 281

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 282 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 341

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 342 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 401

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 402 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 451


>gi|269218549|ref|ZP_06162403.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211660|gb|EEZ78000.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 767

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 8/178 (4%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           L   + + + +       V     +   R ++  +   + +   Q    L+ V T+  AE
Sbjct: 323 LSDAEEVTISRPATTVSTVKQMYAVVPERHKIGALARVLAVTEAQ--AALVFVRTRSTAE 380

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DLT  L  R +    +  +V   ER +++  LR G  DVLV  ++   GLD+   GLV  
Sbjct: 381 DLTIELGARGVATAALSGDVVQKEREKLVARLRDGTLDVLVATDVAARGLDVDRIGLVVN 440

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRREKQLE 713
            D  +E       + +  IGR  R   +   I +     +     I++ T  R +Q+E
Sbjct: 441 FDVPRE-----TDTYVHRIGRTGRAGRTGESITFVTPKERPRLRRIEKQTGSRMEQIE 493


>gi|261755014|ref|ZP_05998723.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|261744767|gb|EEY32693.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
          Length = 517

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 246 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 295

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 296 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 355

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 356 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 415

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 416 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 465


>gi|224824946|ref|ZP_03698052.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224602617|gb|EEG08794.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 438

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 8/155 (5%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E + D I   A      ++   TK  +E+L + L ++      +H ++    R   + DL
Sbjct: 232 ERLLDHILKEAGFDQ-AVIFTATKIGSEELADKLSDQGYAAACLHGDMPQNWRNRTLNDL 290

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G+  +LV  ++   G+D+P    V   D  K+         +  IGR  R     V +
Sbjct: 291 RRGRVRILVATDVAARGIDVPTITHVVNYDLPKQ-----AEDYVHRIGRTGRAGRDGVAI 345

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
                 +  +  +    +  ++Q+       + P 
Sbjct: 346 TLAESKEFHK--VRRIEQYLKRQITEGVIEGMEPT 378


>gi|194752113|ref|XP_001958367.1| GF10884 [Drosophila ananassae]
 gi|190625649|gb|EDV41173.1| GF10884 [Drosophila ananassae]
          Length = 822

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A+   + ++ V TK+  +++T  +  +  R   +H +    ER  ++   R G+  +LV 
Sbjct: 395 AENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVA 454

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  +    +  IGR  R+ N     Y      +  
Sbjct: 455 TDVAARGLDVDDVKFVINYD-----YPSNSEDYVHRIGRTGRSNNRGTA-YTLFTHSNAN 508

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A D        Q+       INP+
Sbjct: 509 KAND------LIQVLREANQTINPK 527


>gi|189347343|ref|YP_001943872.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
 gi|189341490|gb|ACD90893.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
          Length = 610

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 6/157 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           IL+ V TK M  +L E L  R      ++ ++   +R   +  L+ G   +++  ++   
Sbjct: 266 ILIFVRTKTMTLELAEKLQARGYAASALNGDMAQNQRERTVDQLKDGSLSIVIATDVAAR 325

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     K++  AI++
Sbjct: 326 GLDVDRISHVINYD-----IPSDTESYVHRIGRTGRAGRSGEAILFVSPREKNMLYAIEK 380

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
            TR+R + +E      IN + V +    + D I  ED
Sbjct: 381 ATRKRIELMELPSTEIINDKRVAKFKQRITDTIAAED 417


>gi|167394408|ref|XP_001733535.1| pre-mRNA-processing ATP-dependent RNA helicase prp11 [Entamoeba
           dispar SAW760]
 gi|165894690|gb|EDR22596.1| pre-mRNA-processing ATP-dependent RNA helicase prp11, putative
           [Entamoeba dispar SAW760]
          Length = 636

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 13/171 (7%)

Query: 523 PTTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
              ++ SAT P S E      L++   II     + +  ++  VE+   + ++  +   +
Sbjct: 236 KQIVMFSATFPISVEQHAREFLKKPIEIICGGRSQVSNTIEQIVEVIEIKKKIARLISIV 295

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD- 634
                +G RI++   T++  ++L + L ERNI    +H  +  ++R   I++ + G    
Sbjct: 296 LEQNNKGGRIIIFTETQKNCDELYQNLMERNINCLLLHGGIDQIDRQNTIQEFKSGIGRT 355

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +L+  +L   GLDI    LV   D             +  +GR  R     
Sbjct: 356 ILITTSLCARGLDIKGLELVINYDC-----PNHLEDYVHRVGRTGRAGKRG 401


>gi|331217131|ref|XP_003321244.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300234|gb|EFP76825.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 547

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 75/188 (39%), Gaps = 15/188 (7%)

Query: 519 NCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQV 568
             +RP   T++ SAT            + + I    G +D          VE+ S   + 
Sbjct: 286 EQIRPDRQTLMFSATWPKEVQRLASEYLKDFIQVNVGSLDLTANINITQIVEVCSDFEKR 345

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             +   +   + +  ++L+ V TKR+A+DLT+YL +       +H + +  ER  ++ + 
Sbjct: 346 GKLIKHLEKISSESAKVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQQERDWVLEEF 405

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G+  +++  ++   GLD+ +   V   D             I  IGR  R   +    
Sbjct: 406 KSGRSPIMIATDVASRGLDVKDIAYVINYD-----MPNGIEDYIHRIGRTGRAGRTGTAY 460

Query: 689 YADTITKS 696
              +  +S
Sbjct: 461 SYISADQS 468


>gi|307706894|ref|ZP_07643696.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
 gi|307617767|gb|EFN96932.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
          Length = 524

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 98/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVD-QYYIRVKEQEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K ++  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPASAEEAFQAKKHVALKKIERDFADETIRANFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    + ++   ++ SL  Q
Sbjct: 409 AAEF---TPEELAMYILSLTVQ 427


>gi|306825666|ref|ZP_07459005.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432027|gb|EFM35004.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 518

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 99/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTDLVD-QYYIRVKEQEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K ++  + ++    +       E  A     +
Sbjct: 349 GYLQIIENLTKKRMKGLKPASAEEAFQAKKHVALKKIERDFADETIRGNFEKFAKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    S ++   ++ SL  Q
Sbjct: 409 AAEF---SPEELAMYILSLTVQ 427


>gi|237748776|ref|ZP_04579256.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
 gi|229380138|gb|EEO30229.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
          Length = 465

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 84/255 (32%), Gaps = 31/255 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ---VEDVYDEINLAAQ 580
            T++ SAT     L+   G +  +I R   L    + I S  ++   ++ +   ++    
Sbjct: 204 QTMLFSAT-----LDGIVGNMARKITRDPEL----IHIHSVASRHENIDQMIHFVDDLPH 254

Query: 581 QGL------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +              + L+   TKR A+ + + L         +H ++    R   +  L
Sbjct: 255 KNRLLDHLLHDRSLDQALVFTATKRDADIVADRLAIAGFSAAALHGDMPQGARNRTLTKL 314

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G+  +LV  ++   G+DIP    V   D  K          +  IGR  R     + +
Sbjct: 315 RRGQVKILVATDVAARGIDIPNITHVVNYDLPKF-----PEDYVHRIGRTGRAGRHGLAI 369

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                  +    + +  R  ++ +  N      P+   +       P   +  +  N S 
Sbjct: 370 SLVNHNDNNN--VRKIERFTKQSIPVNVIEGFEPKLSFKAAPSKRKPSGWKPGSKRNASP 427

Query: 749 DAQQLSLSKKKGKAH 763
              Q    K      
Sbjct: 428 KFSQRGFGKPAAARK 442


>gi|254381813|ref|ZP_04997176.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
 gi|194340721|gb|EDX21687.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
          Length = 518

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 84/222 (37%), Gaps = 27/222 (12%)

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF-EEWNCLRP------TTIVVSAT-PGS 534
           ++G  + D  R   L      L    +   L F  +   +         T++ SAT PG+
Sbjct: 179 LAGQKKLDLSRVKALV-----LDEADEMLDLGFLPDVEKIINYLPPKRQTMLFSATMPGA 233

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------EDVYDEINLAAQQGLRIL 586
                 + +     IR T      V + + +  V         ++   I  A  +GL  +
Sbjct: 234 VIGLARRYMTQPTHIRATSPEGEGVTVANIKQHVFRAHNMDKPELVSRILQAEGRGL-AM 292

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +   TKR A D+ E L +R      +H ++    R + +R  R GK DVLV  ++   G+
Sbjct: 293 IFCRTKRTAADIAEQLEKRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGI 352

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           D+     V    A        + + +  +GR  R  N  + +
Sbjct: 353 DVEGVTHVINYQA-----PEDEKTFLHRVGRTGRAGNKGIAV 389


>gi|220921591|ref|YP_002496892.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219946197|gb|ACL56589.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 1091

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 82/236 (34%), Gaps = 24/236 (10%)

Query: 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFK 214
           +A   +   I S      L+G+  +               P + +A +     ++ +  +
Sbjct: 13  SAAEIIAPAIPSGALAVALIGLAETAA-------------PLVFLARDGRRLDEIAAILR 59

Query: 215 NFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIV 274
           +  P   V  +  + D    +   P   T   +   +                 R D ++
Sbjct: 60  SLAPARQVAVYPEW-DCLPGDRTSPSRGTMGARAGVLRW---------LADTAHRPDLLL 109

Query: 275 VSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGD 334
            ++ + I  +   E +++  V L++GD  E   L ++L +  Y   +     G   V G 
Sbjct: 110 STAPALIQRVPPPEIWAEARVALRVGDGFEAASLTAALTRLGYILDERVDEPGEIAVRGR 169

Query: 335 SIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
           ++E+FP+       R+      I  I  + P+T + + +   + I   +  +    
Sbjct: 170 TLEVFPA-AAPRPCRIEHEDGRITAIRSYDPVTQRSVADAAELVIDPATELILGPD 224



 Score = 43.2 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 7/148 (4%)

Query: 524 TTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             + ++ATP    L+    G+    +I    +V  P+    A    + V   +    ++G
Sbjct: 708 HVLTLTATPIPRTLQTALVGLQDLSVIATPPVVRQPIRTVIAPFAPDTVRAALMREHRRG 767

Query: 583 LRILLTVLTKR----MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +  +          M   L   + E  I +   H E+      E +     G+ DVL+ 
Sbjct: 768 GQSFVVCPRIADLAPMEAQLRSIVPELTIALA--HGELPPDTMDEAMVRFAAGEGDVLLA 825

Query: 639 INLLREGLDIPECGLVAILDADKEGFLR 666
            N++  GLD+P    + +   ++ G  +
Sbjct: 826 TNIIESGLDVPRANTMLVWHPERFGLAQ 853


>gi|13959325|sp|Q9JIK5|DDX21_MOUSE RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
           protein 21; AltName: Full=Gu-alpha; AltName:
           Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
           RNA helicase II; AltName: Full=RH II/Gu
 gi|16975510|gb|AAD43959.3|AF159131_1 nucleolar RNA helicase II/Gu [Mus musculus]
          Length = 851

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 97/254 (38%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W         +     V+ I + T      VE  + +    +    + 
Sbjct: 441 PQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIG 500

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++    +    + +H ++   +R   ++  R G 
Sbjct: 501 DVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFRNGN 559

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + V +    
Sbjct: 560 FGVLVATNVAARGLDIPEVDLVVQSCPPKDV-----ESYIHRSGRTGRAGRTGVCICFYQ 614

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QLA          Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 615 NKEEYQLA----------QVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 662

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 663 ISHFKQSAEKLIEE 676


>gi|302774092|ref|XP_002970463.1| hypothetical protein SELMODRAFT_441099 [Selaginella moellendorffii]
 gi|300161979|gb|EFJ28593.1| hypothetical protein SELMODRAFT_441099 [Selaginella moellendorffii]
          Length = 1198

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 18/189 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP---------VEIRSARTQVEDVYDE 574
            T++ +AT      +    +++  I    G  D           VE+ S + +   + + 
Sbjct: 359 QTLMYTATWPKEVRKIAGDLLMNPIQVNIGNTDDLAANKAITQCVEVVSPQDKARKL-EL 417

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I    + G +I++   TKRM + L   L  R+     +H +    ER  ++   + GK  
Sbjct: 418 ILRTQEPGSKIIIFCSTKRMCDQLARSLR-RDFGAVAIHGDKSQGERDWVLSQFKAGKSP 476

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL--YADT 692
           VLV  ++   GLDI +  +V   D     F       +  IGR  R   + +    +A+ 
Sbjct: 477 VLVATDVAARGLDIKDIRVVINYD-----FPTGVEDYVHRIGRTGRAGATGLAHTFFAEQ 531

Query: 693 ITKSIQLAI 701
             K  +  I
Sbjct: 532 DGKYARDLI 540


>gi|302661477|ref|XP_003022406.1| hypothetical protein TRV_03470 [Trichophyton verrucosum HKI 0517]
 gi|291186349|gb|EFE41788.1| hypothetical protein TRV_03470 [Trichophyton verrucosum HKI 0517]
          Length = 635

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 7/129 (5%)

Query: 578 AAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            ++ G R   L+  +      DLT    E  +  RY+  +     R + +   R  +F V
Sbjct: 269 RSKAGERKSTLVFCVDIAHVRDLTAKFREIGVDARYITGQTPKDVRAKELEAFRNYEFPV 328

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   L  EG DIP    V +    +     SK  LIQ IGR  R    K   +   +  
Sbjct: 329 LVNCGLFTEGTDIPNIDCVLLARPTR-----SKNLLIQMIGRGLRLHPDKANCHIIDMVA 383

Query: 696 SIQLAIDET 704
           S+   +  T
Sbjct: 384 SLNCGVLTT 392


>gi|237815476|ref|ZP_04594474.1| DEAD-box ATP dependent DNA helicase [Brucella abortus str. 2308 A]
 gi|237790313|gb|EEP64523.1| DEAD-box ATP dependent DNA helicase [Brucella abortus str. 2308 A]
          Length = 545

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 246 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 295

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 296 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 355

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 356 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 415

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 416 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 465


>gi|189467630|ref|ZP_03016415.1| hypothetical protein BACINT_04020 [Bacteroides intestinalis DSM
           17393]
 gi|189435894|gb|EDV04879.1| hypothetical protein BACINT_04020 [Bacteroides intestinalis DSM
           17393]
          Length = 482

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 97/275 (35%), Gaps = 46/275 (16%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L + + +   + +D+    +                + + GF      D + L  +
Sbjct: 135 TPGRLLDLMSQGF-IRLDDVRHFV----------LDEADRMLDMGFI----HDVKRLLPK 179

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
                +  T+  SAT     +++    ++    R        VE+  A + VE +   + 
Sbjct: 180 L--PPKKQTLFFSAT-MPDSIDRLAKSLLHNPAR--------VEVTPASSVVEIISQSVY 228

Query: 577 LA--------------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
                            + G ++L+   TK  A+++  YL  R I    +H +     R 
Sbjct: 229 RVEKPQKKELLAQLLLGEAGHQVLVFSRTKHGADNIARYLSRRGIACESIHGDKSQNARQ 288

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             + + + G+ +V++  ++   G+DI    LV   D           + +  IGR  R  
Sbjct: 289 RALSNFKEGRSNVIIATDIAARGIDIKGLDLVLNFD-----LPDVPETYVHRIGRTGRAG 343

Query: 683 -NSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
              + I +  +    +   I++ T  +  Q +HN 
Sbjct: 344 CEGRAIAFCSSEEAPMLREIEKLTGIKLVQQKHNL 378


>gi|23397305|gb|AAN31934.1| putative RNA helicase, DRH1 [Arabidopsis thaliana]
          Length = 423

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 14/183 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--------YD 573
           +  T++ +AT      +    ++V       G VD  V  +S    +E V         +
Sbjct: 140 KRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLE 199

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I  + + G ++++   TKRM + LT  L  R      +H +    ER  ++   R G+ 
Sbjct: 200 QILRSQEPGSKVIIFCSTKRMCDQLTRNLT-RQFGAAAIHGDKSQPERDNVLNQFRSGRT 258

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VLV  ++   GLD+ +   V   D     F       +  IGR  R   +         
Sbjct: 259 PVLVATDVAARGLDVKDIRAVVNYD-----FPNGVEDYVHRIGRTGRAGATGQAFTFFGD 313

Query: 694 TKS 696
             S
Sbjct: 314 QDS 316


>gi|16126090|ref|NP_420654.1| DEAD-box ATP dependent DNA helicase [Caulobacter crescentus CB15]
 gi|221234860|ref|YP_002517296.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
 gi|13423288|gb|AAK23822.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
           crescentus CB15]
 gi|220964032|gb|ACL95388.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
          Length = 517

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 78/250 (31%), Gaps = 34/250 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++     LL       T  Q   +   D      + + GF         P    
Sbjct: 130 TPGRLLDHFERGKLLM------TGVQFLVVDEADR-----MLDMGFI--------PDIER 170

Query: 517 EWNCL--RPTTIVVSATPGSWELEQCQGIIVE----QIIRPT----GLVDPPVEIRSART 566
            +     +  T+  SAT         +  + +    ++ RP      +    V++ S+  
Sbjct: 171 IFKMTPPKKQTLFFSATMPPEITRLTKQFLRDPVRIEVARPATTNANITQLLVKVPSSDP 230

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +     +        ++    K   + + + L         +H ++   +R++ + 
Sbjct: 231 KAKRLALRALIEKAGIETGIVFCNRKTEVDIVAKSLKVHGYDAAPIHGDLDQTQRMKTLA 290

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D R G   +LV  ++   GLDIP    V   D             +  IGR  R   + +
Sbjct: 291 DFRSGALKILVASDVAARGLDIPAVSHVFNYDV-----PHHADDYVHRIGRTGRAGRTGI 345

Query: 687 ILYADTITKS 696
                T    
Sbjct: 346 TYMLVTPADD 355


>gi|260777273|ref|ZP_05886167.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606939|gb|EEX33213.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 641

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 79/210 (37%), Gaps = 28/210 (13%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 356

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-DPILLEDAATTNISIDAQQLSLS 756
              I+  T                 +S  E+I   + D +           ++ ++   S
Sbjct: 357 LRTIERVT-----------------KSSMEEIQLPLRDKVAEARLVKLGAELEQEKEHKS 399

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
            +K    ++ L+  + + A  L    AA +
Sbjct: 400 LEKFGELVEKLQDALEIDAATL----AAIL 425


>gi|254714133|ref|ZP_05175944.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|254716809|ref|ZP_05178620.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
          Length = 535

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 232 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 281

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 282 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 341

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 342 GADTVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 401

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 402 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 451


>gi|195452372|ref|XP_002073325.1| GK14071 [Drosophila willistoni]
 gi|194169410|gb|EDW84311.1| GK14071 [Drosophila willistoni]
          Length = 802

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 65/177 (36%), Gaps = 17/177 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE----------IRSARTQVEDVYD 573
            T++ SAT      E     +   I    G V    E           +  R+ + D+  
Sbjct: 490 QTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEQDKRSYLLDLLS 549

Query: 574 EINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            I    +  +    L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R  R G
Sbjct: 550 SIRDGPEYCKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSG 609

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              +LV   +   GLDIP    V   D             +  IGR  R  N  V  
Sbjct: 610 DCPILVATAVAARGLDIPHVKHVINFD-----LPSDVEEYVHRIGRTGRMGNLGVAT 661


>gi|260947802|ref|XP_002618198.1| hypothetical protein CLUG_01657 [Clavispora lusitaniae ATCC 42720]
 gi|238848070|gb|EEQ37534.1| hypothetical protein CLUG_01657 [Clavispora lusitaniae ATCC 42720]
          Length = 692

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 11/141 (7%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           V  ++  AA  GL  ++   TKRMA+ L ++LY++      +H      ER + +   + 
Sbjct: 471 VILDLLSAADNGL-TIVFTETKRMADYLADFLYDQGFPATAIHGNRTQYEREKALAAFKN 529

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   +LV   +   GLDIP    V   D             +  IGR  R  N+ +    
Sbjct: 530 GTAPILVATAVAARGLDIPNVSHVINYD-----LPSDIDDYVHRIGRTGRAGNTGIATSF 584

Query: 691 -----DTITKSIQLAIDETTR 706
                  I K +   + E  +
Sbjct: 585 FNRNNKNIVKDMIALLSEANQ 605


>gi|183231239|ref|XP_650493.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|169802550|gb|EAL45107.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 722

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 14/188 (7%)

Query: 523 PTTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
              ++ SAT P S E      L++   II     + +  ++  VE+   + ++E +   +
Sbjct: 322 KQIVMFSATFPISVEQHAREFLKKPIEIICGGRSQVSNTIEQIVEVIETKKKIERLISIV 381

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD- 634
                +G RI++   T++  ++L + L ERNI    +H  +  ++R   I++ + G    
Sbjct: 382 LEQNNKGGRIIIFTETQKNCDELYQNLMERNINCLLLHGGIDQIDRQNTIQEFKSGIGRT 441

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTI 693
           +L+  +L   GLD+    LV   D             +  +GR  R     K I +    
Sbjct: 442 ILITTSLCARGLDVKGLELVINYDC-----PNHLEDYVHRVGRTGRAGKRGKAITFITKE 496

Query: 694 TKSIQLAI 701
            +     I
Sbjct: 497 EERYSEDI 504


>gi|19387227|gb|AAL87144.1|AF479825_1 DEAD box RNA helicase Vasa [Oncorhynchus mykiss]
          Length = 396

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 16/178 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR--------PTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      +     + +  +             V+  V   +  ++ + + + +
Sbjct: 148 QTLMFSATYPEDIQKLAADFLKKDYLFLAVGVVGGACSDVEQVVVQVTKFSKRDQLLEVL 207

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   R ++ V TKR A+ +  +L    +    +H + +  ER + + D R G+  V
Sbjct: 208 KTTGS--ERTMVFVETKRQADFIATFLCREKVNTTSIHGDREQREREQALGDFRSGRCPV 265

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
           LV  ++   GLDI +   +   D        +    +  IGR  R  N+   + + D 
Sbjct: 266 LVATSVAARGLDIKDVQHIVNFD-----LPNNIDEYVHRIGRTGRCGNTGRAVCFFDP 318


>gi|185134419|ref|NP_001117665.1| Vasa [Oncorhynchus mykiss]
 gi|6521014|dbj|BAA88059.1| Vasa [Oncorhynchus mykiss]
          Length = 647

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 16/178 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR--------PTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      +     + +  +             V+  V   +  ++ + + + +
Sbjct: 399 QTLMFSATYPEDIQKLAADFLKKDYLFLAVGVVGGACSDVEQVVVQVTKFSKRDQLLEVL 458

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   R ++ V TKR A+ +  +L    +    +H + +  ER + + D R G+  V
Sbjct: 459 KTTGS--ERTMVFVETKRQADFIATFLCREKVNTTSIHGDREQREREQALGDFRSGRCPV 516

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
           LV  ++   GLDI +   +   D        +    +  IGR  R  N+   + + D 
Sbjct: 517 LVATSVAARGLDIKDVQHIVNFD-----LPNNIDEYVHRIGRTGRCGNTGRAVCFFDP 569


>gi|28302109|gb|AAL87139.2|AF479820_1 DEAD box RNA helicase Vasa [Cyprinus carpio]
          Length = 691

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 75/181 (41%), Gaps = 15/181 (8%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVD------PPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   +      + V+ I    G+V           ++   T+ + + + + 
Sbjct: 443 QTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVTSTKRDQLLELL- 501

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +    R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R G+  VL
Sbjct: 502 -RSTGNERTMVFVETKRSADFIATFLCQEKMSTTSIHGDREQREREKALSDFRTGQCPVL 560

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITK 695
           V  ++   GLDI +   V   D        S    +  IGR  R  N  + + + +  + 
Sbjct: 561 VATSVAARGLDIEQVQHVVNFD-----LPSSIDEYVHRIGRTGRCGNIGRAVSFFNPESD 615

Query: 696 S 696
           +
Sbjct: 616 T 616


>gi|308498555|ref|XP_003111464.1| hypothetical protein CRE_03767 [Caenorhabditis remanei]
 gi|308241012|gb|EFO84964.1| hypothetical protein CRE_03767 [Caenorhabditis remanei]
          Length = 405

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +++SAT     LE     + + I        +   G+    V +     + + + D  
Sbjct: 204 QVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLY 263

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +       + +L   T+R  + LT+ + E N  V  MH +++  +R E++++ R G   V
Sbjct: 264 DTLTIT--QAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRV 321

Query: 636 LVGINLLREGLDIPECGLVA-ILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           L+  ++   GLD+P+  LV+ +++ D      ++   I  IGR+ R     V I +    
Sbjct: 322 LISTDVWARGLDVPQVSLVSNVINYD---LPNNRELYIHRIGRSGRFGRKGVAINFVKQD 378

Query: 694 TKSIQLAIDE 703
              I   I++
Sbjct: 379 DVRILRDIEQ 388


>gi|302685145|ref|XP_003032253.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8]
 gi|300105946|gb|EFI97350.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8]
          Length = 488

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 73/181 (40%), Gaps = 13/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T++ SAT      +     + + I    G ++           E+ S   +   +   +
Sbjct: 241 QTLMFSATWPKDVQKLANDFLKDFIQVNIGSMELAANHNITQITEVCSDFEKRNKLIKHL 300

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +  + +  ++L+ V TKR+A+D+T YL +       +H + +  ER  ++ + + G+  +
Sbjct: 301 DQISSENAKVLIFVGTKRVADDITRYLRQDGWPALAIHGDKEQRERDWVLGEFKAGRSPI 360

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   GLD+ + G V   D     F  +    I  IGR  R           T   
Sbjct: 361 LIATDVASRGLDVKDIGYVINYD-----FPNNCEDYIHRIGRTGRAGAKGTAYTYFTTEN 415

Query: 696 S 696
           +
Sbjct: 416 A 416


>gi|229496684|ref|ZP_04390398.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316581|gb|EEN82500.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
          Length = 451

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 87/218 (39%), Gaps = 18/218 (8%)

Query: 524 TTIVVSAT--PGSWELEQC----QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
              + SAT  P   EL +        +   I +P   +     I     ++  V D ++ 
Sbjct: 182 QIALFSATMPPKIEELARSILKDPVHVAIAISKPPETILQSAYICYEAQKLPIVTDLLSS 241

Query: 578 AAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +++   + ++   +K     L   L  R + V  MHS++    R +++RD + G  +VL
Sbjct: 242 MSEEKPTKTVVFSSSKLKVHQLATALKSRGVNVAEMHSDLDQTTREQVMRDFKTGYVEVL 301

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK- 695
           V  +++  G+DI +  +V   D             +  IGR AR  + + +       + 
Sbjct: 302 VATDIVARGIDIDDIKVVINYD-----MPHDPEDYVHRIGRTARGTDGRGVAITLVNEEE 356

Query: 696 -----SIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
                +++  +  +  +     E+ +    +P++ +++
Sbjct: 357 QRSFAALEHFLGYSIYKVPIGSEYGEAPKYSPKTSQKR 394


>gi|255072433|ref|XP_002499891.1| predicted protein [Micromonas sp. RCC299]
 gi|226515153|gb|ACO61149.1| predicted protein [Micromonas sp. RCC299]
          Length = 394

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 22/193 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              ++VSAT     LE     + + +        +   G+    V +     + +   D+
Sbjct: 195 TQVVLVSATLPQEVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL 254

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TKR  + LT+ + + N  V  MH ++   ER  I+ + R G
Sbjct: 255 YDTLTIT-----QAVIFCNTKRKVDWLTDKMRQNNFTVSSMHGDMPQKERDAIMGEFRGG 309

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
              VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V I + 
Sbjct: 310 TTRVLITTDVWARGIDVQQVSLVINYD-----LPNNRENYIHRIGRSGRYGRKGVAINFV 364

Query: 691 DTITKSIQLAIDE 703
                 I   I++
Sbjct: 365 KADDVRILRDIEQ 377


>gi|220904989|ref|YP_002480301.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869288|gb|ACL49623.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 595

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 75/194 (38%), Gaps = 18/194 (9%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPTGLVDPPV------EIRSARTQVEDVYDEI 575
             ++ SAT  P   EL +      E +     ++  P       E+R    +++ +   +
Sbjct: 178 QRVLFSATVPPAIRELSKRFLREPEMLTVAQKMLTVPAIEQIYYEVRP-HQKMDALCRLL 236

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +  A    + L+   TKR A+++T +L +R  +   +H  +   +R  +++  R    DV
Sbjct: 237 DSRAFH--KALVFCSTKRGADEVTTHLQQRGYQSDSLHGNLAQSQRDRVMQRFRAEGLDV 294

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLD+ +   V   D             +  IGR  R           T+ +
Sbjct: 295 LVATDVAARGLDVDDVDAVINYD-----IPHDVEKYVHRIGRTGRAGRVGSAFTFVTMRE 349

Query: 696 --SIQLAIDETTRR 707
              ++  I  T  R
Sbjct: 350 HYKMRDIIRCTRAR 363


>gi|195588318|ref|XP_002083905.1| GD13105 [Drosophila simulans]
 gi|194195914|gb|EDX09490.1| GD13105 [Drosophila simulans]
          Length = 814

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A+   + ++ V TK+  +++T  +  +  R   +H +    ER  ++   R G+  +LV 
Sbjct: 398 AENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVA 457

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  +    +  IGR  R+ N+    Y      +  
Sbjct: 458 TDVAARGLDVDDVKFVINYD-----YPSNSEDYVHRIGRTGRSNNTGTA-YTLFTHSNAN 511

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A D        Q+       INP+
Sbjct: 512 KAND------LIQVLREANQTINPK 530


>gi|195492387|ref|XP_002093968.1| GE20460 [Drosophila yakuba]
 gi|194180069|gb|EDW93680.1| GE20460 [Drosophila yakuba]
          Length = 818

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A+   + ++ V TK+  +++T  +  +  R   +H +    ER  ++   R G+  +LV 
Sbjct: 400 AENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVA 459

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  +    +  IGR  R+ N+    Y      +  
Sbjct: 460 TDVAARGLDVDDVKFVINYD-----YPSNSEDYVHRIGRTGRSNNTGTA-YTLFTHSNAN 513

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A D        Q+       INP+
Sbjct: 514 KAND------LIQVLREANQTINPK 532


>gi|194865632|ref|XP_001971526.1| GG15018 [Drosophila erecta]
 gi|190653309|gb|EDV50552.1| GG15018 [Drosophila erecta]
          Length = 824

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A+   + ++ V TK+  +++T  +  +  R   +H +    ER  ++   R G+  +LV 
Sbjct: 401 AENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVA 460

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  +    +  IGR  R+ N+    Y      +  
Sbjct: 461 TDVAARGLDVDDVKFVINYD-----YPSNSEDYVHRIGRTGRSNNTGTA-YTLFTHSNAN 514

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A D        Q+       INP+
Sbjct: 515 KAND------LIQVLREANQTINPK 533


>gi|171910874|ref|ZP_02926344.1| transcription-repair coupling factor [Verrucomicrobium spinosum DSM
           4136]
          Length = 1117

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 21/235 (8%)

Query: 182 TFTMAKVIEAMQRPAI-VMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
            F  A   +A+ +  + V+ P+  +  Q+  E + +        F          A +P 
Sbjct: 51  PFATALAAQALPKRRLWVVCPDARVQEQVQGELRVWGLP---ALFFPRLSQMGDAAGLPD 107

Query: 241 TDTYIEKESSINEQIDRMRH--------------SATRSLLERNDCIVVSSVSCIYGIGS 286
            D   E+ +++    + M                 AT     +   +V+ + S    + +
Sbjct: 108 PDALAERITALTRFSESMAGKGHGKGKARPGDSGEATGGDEGQPRVLVICADSLDEEVPA 167

Query: 287 VESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDV 346
           +       + L+ G  ++ + LL  L    Y+R  +   RG     G  +++F S   + 
Sbjct: 168 LHELEAGKMSLQTGMKLDVEALLQDLGSAGYERVPVVTERGQVARRGGIVDVF-SWQAEE 226

Query: 347 AWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE 401
             R+  F +++E +  F   T   ++  + +++    H         T  ++I+E
Sbjct: 227 PLRMEFFDDELESLRSFDIHTQTSVQRFQRMQL--LLHSADTTGETTTVRQFIQE 279



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 2/98 (2%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDL 628
           + D IN   ++G ++          E +   L   + + R +  H ++      +++R  
Sbjct: 756 IRDAINKEIERGGQVFFLHNRVMDMEKMKAKLEALSPKARVVIGHGQMDETLLEDVMRRF 815

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
             G+ DVL+   ++  G+DIP    + I  AD+ G   
Sbjct: 816 IAGEADVLLCTTIIESGVDIPNANTIIIDRADRFGLAD 853


>gi|28574962|ref|NP_648062.2| CG10077, isoform A [Drosophila melanogaster]
 gi|20976828|gb|AAM27489.1| GH10652p [Drosophila melanogaster]
 gi|28380590|gb|AAF50635.2| CG10077, isoform A [Drosophila melanogaster]
 gi|220947070|gb|ACL86078.1| CG10077-PA [synthetic construct]
 gi|220960420|gb|ACL92746.1| CG10077-PA [synthetic construct]
          Length = 818

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A+   + ++ V TK+  +++T  +  +  R   +H +    ER  ++   R G+  +LV 
Sbjct: 401 AENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVA 460

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  +    +  IGR  R+ N+    Y      +  
Sbjct: 461 TDVAARGLDVDDVKFVINYD-----YPSNSEDYVHRIGRTGRSNNTGTA-YTLFTHSNAN 514

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A D        Q+       INP+
Sbjct: 515 KAND------LIQVLREANQTINPK 533


>gi|302696869|ref|XP_003038113.1| hypothetical protein SCHCODRAFT_63532 [Schizophyllum commune H4-8]
 gi|300111810|gb|EFJ03211.1| hypothetical protein SCHCODRAFT_63532 [Schizophyllum commune H4-8]
          Length = 396

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE  Q  + + I        +   G+    V +     + +   D
Sbjct: 196 ATQVVLLSATLPYDVLEMTQKFMTDPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCD 255

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LTE + + N  V  MH E+   ER  I+ + R 
Sbjct: 256 LYDTLTIT-----QAVIFCNTRRKVDWLTEKMRQSNFTVSSMHGEMVQKERDAIMAEFRA 310

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 311 GTSRVLITTDVWARGIDVQQVSLVINYD-----LPANRENYIHRIGRSGRFGRKGVAINF 365

Query: 691 DTITK 695
            T+  
Sbjct: 366 VTVDD 370


>gi|197294292|ref|YP_001798833.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
 gi|171853619|emb|CAM11490.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
          Length = 564

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 102/260 (39%), Gaps = 33/260 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA----- 578
            T++ SAT     L      I  +  + T ++  PV+ + A   +E  Y  +        
Sbjct: 179 QTVLFSAT-----LPPSIKQIASKYQKNTKILQVPVK-KLAVNAIEQYYFLVKEFDKNKL 232

Query: 579 ------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                  ++    +L   TK+  +++T +L ++      +H ++K  +R  ++ + R GK
Sbjct: 233 LVRLLDLKRDYSTILFANTKKDVDEITSFLQDKGFLADAVHGDLKQNQRQYVMNNFRKGK 292

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             +L+  ++   G+DI +  +V   D   E         +  IGR  R     +     +
Sbjct: 293 IKILIATDVAARGIDISDIKMVVNYDLPHE-----DEVYVHRIGRTGRAGKKGLAYSFIS 347

Query: 693 IT-----KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
                  K ++  + E  +  E       K  I  ++ ++K++++I+    E+A    I 
Sbjct: 348 PRKFSQLKKLEYYLKEKVKFLEIPSVEEIKKQIL-ENFEQKVIDIIEKNSQENANNPMIE 406

Query: 748 IDAQQLSLSKKKGKAHLKSL 767
              Q+ S      +  ++ L
Sbjct: 407 KLLQKFS-----SEQIIQGL 421


>gi|154250423|ref|YP_001411248.1| DEAD/DEAH box helicase domain-containing protein [Fervidobacterium
           nodosum Rt17-B1]
 gi|154154359|gb|ABS61591.1| DEAD/DEAH box helicase domain protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 923

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 6/168 (3%)

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           Y+P  D    +    +  +   R  A    ++     + +  + ++ +     + + I  
Sbjct: 24  YIPDYDVLPYENLRPSWYVRSRRIYALYLAVQGKLKGIATLRALLHYVMKPSEFKKYIYH 83

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE-IFPSHLEDVAWRVSMFGN 355
           LK GD +   E      K  Y+R       GTF + G+ I+ + P   +++  R+ ++GN
Sbjct: 84  LKPGDELSSPE--ELFAKLGYERVFNVREGGTFSIRGEIIDYLGP---DNMPVRIELYGN 138

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
            IEEI  F   T +    +E+  +     +V         ++ I E+L
Sbjct: 139 LIEEIRRFDLKTQRSQEKLESALLLPAREFVVEEFKKIEKLEPIDEQL 186



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 17/188 (9%)

Query: 516 EEWNCLRP--TTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIRSARTQVED 570
           E++  LR     + +SATP    L      + E       P G  +  V I     ++  
Sbjct: 541 EKFKKLRVNVHVLSMSATPIPRTLHMALSELKEFSEIKTPPFGRKEVQVHIGPFDDRI-- 598

Query: 571 VYDEINLAAQQGLRILLT---VLTK-RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           V   I     +G +++     V T   + E L E L E +I +   H +    E    I 
Sbjct: 599 VRIAILREINRGGQVIYVHNRVNTIYDVYERLKELLPEVSIVIG--HGQQSKSELKRAID 656

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
               GK DVL+   ++  G+D+P    + + DA + G  +    L Q  GR  R+     
Sbjct: 657 MFFHGKADVLLCTTIVENGVDVPNANTLIVDDAHRYGLAQ----LYQLRGRVGRSDKISF 712

Query: 687 ILYADTIT 694
             +     
Sbjct: 713 AYFFHPKH 720



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 78/201 (38%), Gaps = 25/201 (12%)

Query: 530 ATPGSWELEQCQGIIV------EQIIRPTGLVDPPVEIRSAR---------TQVEDVYDE 574
           A PG  ELE             +Q+     + +  V  +             + E     
Sbjct: 384 ALPGDSELESEFAKTFPYIETEDQLKAIQDVFEDLVSGKPMDRLLVGDAGYGKTEVAIRA 443

Query: 575 INLAAQQGLRILL----TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           I  A   G +  L    TVL ++  E++ E      IRV  +   V   ER EI+RD++ 
Sbjct: 444 IFRAIVSGKQAALLAPTTVLARQHYENIAERFKPFGIRVALLDRFVTKKEREEILRDVKN 503

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           GK D+L+G + +   +   + GLV I +  K G  + +        +  R     + + A
Sbjct: 504 GKIDLLIGTHSILNNVVFADLGLVVIDEEQKFGVEQKEKF------KKLRVNVHVLSMSA 557

Query: 691 DTITKSIQLAIDETTRRREKQ 711
             I +++ +A+ E     E +
Sbjct: 558 TPIPRTLHMALSELKEFSEIK 578



 Score = 41.6 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 13/175 (7%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREK-VQLLLGVTGSGKTFTMAKVI 189
           +   S+  + F     Y  + DQ  AI  + + + S +   +LL+G  G GKT    + I
Sbjct: 385 LPGDSELESEFAKTFPYIETEDQLKAIQDVFEDLVSGKPMDRLLVGDAGYGKTEVAIRAI 444

Query: 190 EAM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIE 246
                  + A ++AP  +LA Q Y      F    +   +      + E      D    
Sbjct: 445 FRAIVSGKQAALLAPTTVLARQHYENIAERFKPFGIRVALLDRFVTKKEREEILRDV--- 501

Query: 247 KESSINEQIDRM--RHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKI 299
                N +ID +   HS   +++  +  +VV      +G+   E + ++ V + +
Sbjct: 502 ----KNGKIDLLIGTHSILNNVVFADLGLVVIDEEQKFGVEQKEKFKKLRVNVHV 552


>gi|320037247|gb|EFW19185.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coccidioides
           posadasii str. Silveira]
          Length = 853

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 89/252 (35%), Gaps = 28/252 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     VE I+    +V   +    E+R   T+   + + + 
Sbjct: 398 QTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAQEITQIVEVRPENTKFVRLLELLG 457

Query: 577 LA----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                   +  R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 458 NLYSDDNNEDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTIDDFKAGI 517

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VL+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 518 FPVLIATSVAARGLDVKQLKLVINYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 570

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNI--NPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K +    P++V++ +   ++ +       +      
Sbjct: 571 --------LTEEQERYSVDIAKALKQSGQSVPEAVQKMVDSFLEKVKSGKEKASASGFGG 622

Query: 751 QQLSLSKKKGKA 762
           + L    ++  A
Sbjct: 623 KGLERLDQERDA 634


>gi|319899115|ref|YP_004159208.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
 gi|319403079|emb|CBI76634.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
          Length = 416

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 94/255 (36%), Gaps = 42/255 (16%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            + + GF      D R  +   +   +  T + SAT    E+      ++++ I+     
Sbjct: 165 RMLDMGFI----SDVR--QIANFLHKKCQTALFSAT-MPKEVNVLADNLLKKPIK----- 212

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEY 601
              +E+    T   ++   +   +    +              +++ + TK  A+ +   
Sbjct: 213 ---IEVVPQGTTAVEITQVLYCVSTSEKKSVLSKLLTNPALASVIVFIRTKHGADSVARS 269

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L +    V  +H       R   ++D R G   +LV  +++  G+DIP    V   D   
Sbjct: 270 LKKTGYSVATIHGNKSQNARQCALKDFREGLVRILVATDIVARGIDIPGISHVINYD--- 326

Query: 662 EGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR----RREK--QLE 713
                +  S +  IGR  RN  S   + L+ + + ++   AI+   R    R+E   Q  
Sbjct: 327 --LPDNAESYVHRIGRTGRNGASGDAITLFDEKVERARLSAIERLIRIKLTRKEIPPQFA 384

Query: 714 HNKKHNINPQSVKEK 728
              +    P++ K +
Sbjct: 385 ALPEKLPEPKTHKRE 399


>gi|323491514|ref|ZP_08096694.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
 gi|323314239|gb|EGA67323.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
          Length = 643

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 73/215 (33%), Gaps = 45/215 (20%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQLRM 356

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
              I+                      V +  ME I                  +  +++
Sbjct: 357 LRTIER---------------------VTKSSMEEIQL--------------PHRDKVAE 381

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKR 792
            +       L  +       L  E+ A + D+++ 
Sbjct: 382 ARLAKLGAELETE-KEH-KAL--EKFAELVDKLQE 412


>gi|308473123|ref|XP_003098787.1| CRE-VBH-1 protein [Caenorhabditis remanei]
 gi|308268083|gb|EFP12036.1| CRE-VBH-1 protein [Caenorhabditis remanei]
          Length = 686

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 10/127 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TKR A +L  +L  + IR   +H ++K +ER   +   R G+F +LV   +   
Sbjct: 431 VLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLEMFRSGQFPILVATAVAAR 490

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI--LYADT---ITKSIQL 699
           GLDIP    V   D             +  IGR  R  N  +    + D    I + ++ 
Sbjct: 491 GLDIPNVRHVINYD-----LPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKN 545

Query: 700 AIDETTR 706
            I E  +
Sbjct: 546 LILEANQ 552


>gi|270490330|ref|ZP_06207404.1| conserved domain protein [Yersinia pestis KIM D27]
 gi|270338834|gb|EFA49611.1| conserved domain protein [Yersinia pestis KIM D27]
          Length = 208

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 70/178 (39%), Gaps = 16/178 (8%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           +TGS      A++IE    P +++ P+   A +L  E + F P              QP 
Sbjct: 22  LTGSACAVECAEIIERHDGPVMLITPDMQTALRLRDEIQQFSP--------------QPV 67

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY-GIGSVESYSQMI 294
           + +   +T      S ++ I   R S    L      +++  ++ +   +   E      
Sbjct: 68  STLSDWETLPYDSFSPHQDIISARLSCLYHLPAMKRGVIILPINTLMQRVCPHEFLHGHA 127

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
           + +K G  + + +L + L +  Y+  +  +  G F   G  ++++P    +  +R+  
Sbjct: 128 LVMKKGQHLSRDKLRAQLEQAGYRSVEQVMEHGEFATRGALLDLYPMGSNE-PYRIDF 184


>gi|255524857|ref|ZP_05391806.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|255511427|gb|EET87718.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
          Length = 375

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 72/208 (34%), Gaps = 19/208 (9%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE----- 574
             +  T+  SAT  S           E +     +    V + + + QV +  D      
Sbjct: 172 SKKRQTLCFSATINSDVKRLAYRYTKEPL--AVTINKEEVTLDAIKQQVVETTDRRKQDA 229

Query: 575 --INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               L        ++   TKR  ++L   LY+R    + +HS++   +R  I++  R G 
Sbjct: 230 LCTVLNQDNPYMAIIFCRTKRRVDELEVSLYKRGCDCKKLHSDILQSKRERIMKAFRNGD 289

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F  L+  ++   GLDI     +   D        S  S I  IGR  R            
Sbjct: 290 FQYLIATDVASRGLDISGVSHIYNYD-----IPESAESYIHRIGRTGRAGEEGYTCLFID 344

Query: 693 ITKSIQ-----LAIDETTRRREKQLEHN 715
               ++      AI     RR+   E++
Sbjct: 345 PKDRLRLEEIEKAIKFKIPRRDLGEENH 372


>gi|73969109|ref|XP_860668.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 11 [Canis
           familiaris]
          Length = 651

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 13/146 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 639 INLLREGL-DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++   GL ++ +   V   D     +  S    +  IGR AR+ N        T   ++
Sbjct: 396 TDVASRGLGNVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-NL 449

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQ 723
           + A      R   ++       INP+
Sbjct: 450 KQA------RELIKVLEEANQAINPK 469


>gi|297739789|emb|CBI29971.3| unnamed protein product [Vitis vinifera]
          Length = 364

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 63/189 (33%), Gaps = 19/189 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYD 573
              T++ SAT    E+++     +   I          T L+   VE      +   + D
Sbjct: 125 VRQTMLFSAT-FPKEIQRLASDFLSSYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMD 183

Query: 574 EINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            ++     G        L+ V TK+ A+ L  +L         +H +    ER   +R  
Sbjct: 184 LLHAQRANGAHGKQSLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREHALRSF 243

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G   +LV  ++   GLDIP    V   D             +  IGR  R   + +  
Sbjct: 244 KSGNTPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKTGLAT 298

Query: 689 YADTITKSI 697
                  S 
Sbjct: 299 AFFNENNSS 307


>gi|227878361|ref|ZP_03996316.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus
           JV-V01]
 gi|256849208|ref|ZP_05554641.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           MV-1A-US]
 gi|293380351|ref|ZP_06626422.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
 gi|227862040|gb|EEJ69604.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus
           JV-V01]
 gi|256713984|gb|EEU28972.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           MV-1A-US]
 gi|290923034|gb|EFD99965.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
          Length = 495

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 13/194 (6%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEI 575
           R  T++ SAT   P     E+         I+   L    +E   +R+  ++  D+   +
Sbjct: 175 RQQTLLFSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRL 234

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L  L+   TKR  ++LT  L  R      +H ++    R+ +++  R GK D+
Sbjct: 235 IDVQGPDL-ALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDI 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   + + + +     
Sbjct: 294 LVATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRTGRAGQNGISVTFVTPNE 348

Query: 695 KSIQLAIDETTRRR 708
                 I++ T+++
Sbjct: 349 IGYMRTIEQLTKKK 362


>gi|227832855|ref|YP_002834562.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262182657|ref|ZP_06042078.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|227453871|gb|ACP32624.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 669

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 7/127 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++   TK   ED+ + L E       ++ ++   +R   +  L+ G+ D+LV  ++   
Sbjct: 305 IIVFCRTKHATEDVADSLKEAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVATDVAAR 364

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     + +  +I+ 
Sbjct: 365 GLDVDRITHVVNYD-----IPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIER 419

Query: 704 -TTRRRE 709
            T  R E
Sbjct: 420 VTNARLE 426


>gi|163758551|ref|ZP_02165638.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
 gi|162283841|gb|EDQ34125.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
          Length = 508

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 65/191 (34%), Gaps = 23/191 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL------ 577
            T++ SAT    E+ Q     +   I  + +            +VE     +        
Sbjct: 189 QTLLFSAT-MPKEIRQLSDRHLTDPIEVSVIPAKK-----TADRVEHSVMHMQPGAKMGA 242

Query: 578 -----AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                  ++G R+++   TKR A+   + L    I    +H      +R   +   R G 
Sbjct: 243 LASLIRDRKGERVIVFTRTKRGADKAAKRLEGDGINAAAIHGNKSQGQRERALAGFRAGT 302

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
             VL+  ++   G+D+P   LV   +             +  IGR AR       + +  
Sbjct: 303 VPVLIATDIAARGIDVPGVSLVVNYE-----LPNVPEVYVHRIGRTARAGAEGTAVTFCA 357

Query: 692 TITKSIQLAID 702
              +S+   I+
Sbjct: 358 PDERSLLRDIE 368


>gi|153009469|ref|YP_001370684.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561357|gb|ABS14855.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 464

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 80/235 (34%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 160 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHSDRQTALFSAT-MPKEIAS 209

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
             G ++   +R    P G     +   +    T+ +       L  +    +++   TK 
Sbjct: 210 LAGSLLHDPVRVEVAPQGTTAAEITQVVHPVHTKEKRRLLSALLGDKAMRSVIVFTRTKH 269

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +L+  ++   G+D+P    
Sbjct: 270 GADAVVRHLERDGYEVAAIHGNKSQNARQRALNGFRDGSLRILIATDIAARGIDVPGISH 329

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 330 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPAAEESKLRAVERVTR 379


>gi|328849915|gb|EGF99087.1| hypothetical protein MELLADRAFT_50777 [Melampsora larici-populina
           98AG31]
          Length = 395

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 78/193 (40%), Gaps = 22/193 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              +V+SAT     LE     + + I        +   G+    V +     + +   D+
Sbjct: 196 TQVVVLSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL 255

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   T+R  + LTE + E N  V  MH ++   ER  I+ + R G
Sbjct: 256 YDTLTIT-----QAVIFCNTRRKVDWLTEKMREANFTVSSMHGDMPQKERDTIMGEFRNG 310

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
              VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V I + 
Sbjct: 311 TSRVLITTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINFV 365

Query: 691 DTITKSIQLAIDE 703
                 I   I++
Sbjct: 366 TNEDVRILRDIEQ 378


>gi|290989782|ref|XP_002677516.1| DEAD/DEAH box helicase [Naegleria gruberi]
 gi|284091124|gb|EFC44772.1| DEAD/DEAH box helicase [Naegleria gruberi]
          Length = 535

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 6/134 (4%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
             R + + + + +    ++  + L+ V  K   + + E L     +   +H +     R 
Sbjct: 343 DRRGKQDKLVEVLTEKKEEREKTLVFVQQKSTCDRIYELLTPLGFKCSVIHGDKDQRSRE 402

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             +R  + G  ++LV  ++   GLDI +   V   D  KE       S I  IGR  R  
Sbjct: 403 RSLRQFKDGYTNILVATDVAARGLDIEKVAHVINYDLPKE-----IDSYIHRIGRTGRVG 457

Query: 683 NSKVIL-YADTITK 695
           N  +   + D    
Sbjct: 458 NLGIATAFFDPSED 471


>gi|220923247|ref|YP_002498549.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219947854|gb|ACL58246.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 465

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 63/191 (32%), Gaps = 17/191 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-----QIIRPTGLVDPPVEIRSART-----QVEDVYD 573
            T+  SAT    E+++     +      ++ RP       +E R   T     Q      
Sbjct: 179 QTLFFSAT-MPPEIQRLADDFLHNPVRIEVARPASTAST-IEQRLVATGGEGHQKRKTLR 236

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +   A++    ++    KR    L + L      V  +H ++    R+  +   R G+ 
Sbjct: 237 RLIRGAEELKNGIIFCNRKRDVAQLQKSLANHGFTVAALHGDMDQRARMAALDAFRSGEI 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIP    V   D             +  IGR  R   +         
Sbjct: 297 PLLVASDVAARGLDIPAVSHVFNFDV-----PHHAEDYVHRIGRTGRAGRNGSAFTLVAR 351

Query: 694 TKSIQLAIDET 704
                LA  E+
Sbjct: 352 GDEKALAAIES 362


>gi|3097266|emb|CAA76677.1| translation initiation factor [Pisum sativum]
          Length = 407

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 13/188 (6%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQVED----VYDEIN 576
              ++S T     LE     +   V  +++   L    ++      + ED        I 
Sbjct: 208 QVCLISRTLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCVIF 267

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +     L++L +V TKR  + LTE +   N  V  MH ++   ER  I+ + R G   VL
Sbjct: 268 MILSPSLKLLYSVNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVL 327

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           +  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I +  +   
Sbjct: 328 ITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVKSDDI 382

Query: 696 SIQLAIDE 703
            I   I++
Sbjct: 383 KILRDIEQ 390


>gi|3776029|emb|CAA09215.1| RNA helicase [Arabidopsis thaliana]
          Length = 263

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 67/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSAT-PGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT P   E        +  + II    ++    ++  +EI     +   +   +
Sbjct: 89  QTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLL 148

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G +IL+ V TKR  + +T  L         +H +    ER  ++ + + G+  +
Sbjct: 149 KQLMD-GSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPI 207

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  +    I  IGR  R     +     T   
Sbjct: 208 MTATDVAARGLDVKDIKCVVNYD-----FPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDN 262

Query: 696 S 696
           +
Sbjct: 263 A 263


>gi|327292871|ref|XP_003231133.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Trichophyton
           rubrum CBS 118892]
 gi|326466763|gb|EGD92216.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Trichophyton
           rubrum CBS 118892]
          Length = 1180

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 87/252 (34%), Gaps = 28/252 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     +E I+    +V P +    E+R+   +   + + + 
Sbjct: 730 QTVLFSATFPRNMEALARKTLSKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLELLG 789

Query: 577 LAAQQGL----RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 790 NLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKAGI 849

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F +L+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 850 FPILIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 902

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K      P+ +++ +   +D +       +      
Sbjct: 903 --------LTEDQERYSVDISKALKQSGQPVPEPIQKMVNAFLDKVKEGKEKASGSGFGG 954

Query: 751 QQLSLSKKKGKA 762
           + L    ++  A
Sbjct: 955 KGLERLDQERDA 966


>gi|312069559|ref|XP_003137738.1| hypothetical protein LOAG_02152 [Loa loa]
 gi|307767094|gb|EFO26328.1| hypothetical protein LOAG_02152 [Loa loa]
          Length = 415

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 80/199 (40%), Gaps = 18/199 (9%)

Query: 515 FEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSA 564
           ++ + C+      +++SAT  S  LE     + + I        +   G+    + +   
Sbjct: 206 YDVFKCMPNDVQVVLLSATMPSEVLEVTNRFMNDPIRILVKREELTLEGIRQFYINVEKE 265

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             + E + D    +     + ++   T+R  + L   + +    V  MH E++  ER  I
Sbjct: 266 EWKFETLCDL--YSTVNVTQAVIFCNTRRKVDYLATQMSKEKYTVSCMHGEMEQSERDVI 323

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D        ++ + I  IGR+ R    
Sbjct: 324 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRK 378

Query: 685 KV-ILYADTITKSIQLAID 702
            V I +       +   I+
Sbjct: 379 GVAINFITEADMRMMKDIE 397


>gi|145517995|ref|XP_001444875.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412308|emb|CAK77478.1| unnamed protein product [Paramecium tetraurelia]
          Length = 813

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 85/246 (34%), Gaps = 49/246 (19%)

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF------RLPSCMD 509
             P  L +++ +D L        +I Q+             + + GF       L +  D
Sbjct: 562 STPGRLLDFM-KDGL-----PLNSITQVV------LDEADRMLDMGFEDQITQILSAVRD 609

Query: 510 NRPLRFEEWNCLRPTTIVVSAT-PGS-WELEQCQGIIVEQIIR--------PTGLVDPPV 559
           +R             T+  SAT P     L          +I+           +    +
Sbjct: 610 DR------------QTLFFSATWPNEVQRLANSLCNQDPIMIQLGEQGLSVNKNIQQEVI 657

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +     + E   +  +    +G ++L+    K   + L   L    ++ RY+H ++K  
Sbjct: 658 IV--YENKFEKFAELTDRL--KGQKLLIFCQKKLDTQKLEYRLSIHGLKARYLHGDLKQA 713

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER +I+ + + G  + L+  NL   GLD+ +  +V   D     F  +    I  IGR  
Sbjct: 714 ERDQIMVEFKSGAINCLITTNLASRGLDVSDVDVVINYD-----FPDTIEDYIHRIGRTG 768

Query: 680 RNVNSK 685
           R     
Sbjct: 769 RAGKKG 774


>gi|316979290|gb|EFV62098.1| ATP-dependent RNA helicase Dbp2 [Trichinella spiralis]
          Length = 540

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 107/288 (37%), Gaps = 42/288 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++            + +  +             + + GF         P   +
Sbjct: 227 TPGRLLDFL-----------RMGVTNLRRCTFLVLDEADRMLDMGFE--------PQIRQ 267

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV--------DPPVEIRSART 566
             +  RP   TI+ SAT  +      +  + + +    G +        +  VEI S   
Sbjct: 268 IVDQTRPDRQTIMFSATWPTEVRALAESFLRDYVFVNIGSLQLAANHNIEQVVEIVSEFE 327

Query: 567 QVEDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           + E +   +    +    ++L+ V TKR A++LT +L ++   V  +H +    ER  ++
Sbjct: 328 KHERLLKLLQEVTKDSDPKVLIFVETKRKADELTRWLRQKGWPVLSIHGDKAQGERDWVL 387

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            + R GK  +++  ++   GLD+ +   V   D     + +     +  IGR  R  N  
Sbjct: 388 NEFRTGKSPIVIATDVAARGLDVDDIKFVVNYD-----YPQCSEDYVHRIGRTGRC-NRT 441

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
              Y      + + A D         +    K ++NP+  +  +ME+I
Sbjct: 442 GTAYTFFNANNARYAKD------LIDVLIEAKQHVNPKLYELGVMEII 483


>gi|322804966|emb|CBZ02525.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum H04402 065]
          Length = 425

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 29/197 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
                ++ SAT    E+ +    IV+  IR        VE+    + V+ +  E+    +
Sbjct: 179 KIRQNLLFSAT-MPSEITKLVDSIVKDPIR--------VEVTPVSSTVDTITQEVYHVRK 229

Query: 581 QGLRIL--------------LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +  R L              +   TKR A  + + L E  I    +H       R   + 
Sbjct: 230 KQKRALLKHLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALN 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + + GK  VLV  ++   G+D+ E   V   +           + +  IGR  R     V
Sbjct: 290 NFKEGKIRVLVATDIAARGIDVNELSHVFNYN-----LPDVPETYVHRIGRTGRAGAKGV 344

Query: 687 -ILYADTITKSIQLAID 702
            I + D        AI+
Sbjct: 345 AISFCDIEETKSLKAIE 361


>gi|327438469|dbj|BAK14834.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 517

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 11/191 (5%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT  P   ++ +      E + I+   L    +E    +    + +D ++    
Sbjct: 177 QTLLFSATMPPAIRKIAETFMKDPEIVKIKAKELTMENIEQFFVKATEREKFDALSRLLD 236

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +Q+    ++   TKR  ++L++ L  R      +H ++   +RI ++R  + GK D+L+ 
Sbjct: 237 SQKPELAIIFGRTKRRVDELSQALGLRGFLAEGIHGDLSQAKRISVLRQFKEGKIDILIA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI     V   D       +   S +  IGR  R   S V +   T  +   
Sbjct: 297 TDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKSGVAVTFVTPREMGY 351

Query: 699 LAI-DETTRRR 708
           L I +ETT++R
Sbjct: 352 LRIVEETTKKR 362


>gi|116787191|gb|ABK24405.1| unknown [Picea sitchensis]
          Length = 408

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             +++SAT     LE     + + +        +   G+    V +     + +   D+Y
Sbjct: 210 QVVLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 269

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R G 
Sbjct: 270 DTLTIT-----QAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRAGT 324

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I +  
Sbjct: 325 TRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVR 379

Query: 692 TITKSIQLAIDE 703
                I   I++
Sbjct: 380 NDDIRILRDIEQ 391


>gi|254476796|ref|ZP_05090182.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
 gi|214031039|gb|EEB71874.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
          Length = 447

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 67/189 (35%), Gaps = 11/189 (5%)

Query: 524 TTIVVSAT-PGSW-ELEQCQGIIVEQI-IRPTGLVDPPVE--IRSARTQVEDVYDEINLA 578
            T++ SAT P    E+         +I + P G     +   +       +    +  LA
Sbjct: 182 QTMLFSATMPKQMNEIANSYLNAPVRIEVSPPGKAADKITQSVHFIAKAEKLSLLKELLA 241

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             +  R L+   TK   E L + L         +H      +R   +   + G+  +LV 
Sbjct: 242 EHKDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALAAFKSGEVKILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSI 697
            ++   GLDIP+   V   +           + +  IGR AR   + + + +        
Sbjct: 302 TDVAARGLDIPDVKFVYNYE-----LPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMDE 356

Query: 698 QLAIDETTR 706
             AI +T +
Sbjct: 357 LKAIQKTMK 365


>gi|77461141|ref|YP_350648.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77385144|gb|ABA76657.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 446

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 94/277 (33%), Gaps = 32/277 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   +++L           Q+  +   +  R     + GF        R L   
Sbjct: 131 TPGRLLDLFRQNAL--------KFNQLQTLVLDEADRM---LDLGFSEELANIYRALP-- 177

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVE--IRSARTQVEDV 571
                +  T++ SAT           ++ +     + P  +    V+  + +   + +  
Sbjct: 178 ----KKRQTLLFSATFSDDIRLLAGQMLNDPQSIEVSPRNVAANTVKQWVVTVDKKRKPE 233

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                +   +  ++L+   T+   + L E L    +    +H +     R   +   +L 
Sbjct: 234 LFVHLMRKNKWKQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKLS 293

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYA 690
           +  +LV  ++   GLDI +  LV   D             I  IGR  R  ++   I   
Sbjct: 294 EVQILVATDVAARGLDIEDLPLVVNFDLPIV-----AEDYIHRIGRTGRAGSTGEAISLV 348

Query: 691 DTITKSIQLAIDETTR---RREKQLEHNKKHNINPQS 724
                ++  AI+  TR   +RE + +   +H   P +
Sbjct: 349 CADEVNMLSAIEMLTRSTLKREIEPDFVPEHR-VPDT 384


>gi|88707113|ref|ZP_01104807.1| ATP-dependent RNA helicase [Congregibacter litoralis KT71]
 gi|88698625|gb|EAQ95750.1| ATP-dependent RNA helicase [Congregibacter litoralis KT71]
          Length = 423

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 71/196 (36%), Gaps = 10/196 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT            +VE +   + P       VE ++     E   D +    +
Sbjct: 180 QTLMFSATFSQEIRSLAARYLVEPVSVDVAPANSTTELVEQKAYAVDPEHKSDLLMHLFR 239

Query: 581 QGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G   + L+   TK  A  L++ L         +H       R   +   + G   +L+ 
Sbjct: 240 EGEWGQALVFCRTKHGANQLSKALLNAGFAAAPIHGNKSQNARQRALDAFKKGDLQLLIA 299

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +L   GLDI +   V   D       +     I   GRA     S  ++ AD   + + 
Sbjct: 300 TDLAARGLDIDQLPEVVNFDLPSV--PQDYVHRIGRTGRAGATGRSHSLVSADD--EPLL 355

Query: 699 LAIDETTRRREKQLEH 714
            AI E   RRE  +EH
Sbjct: 356 RAI-EVLIRREIPMEH 370


>gi|118374919|ref|XP_001020647.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89302414|gb|EAS00402.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 396

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 22/195 (11%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE--- 569
            +   +VVSAT     LE     + + I        +   G+    + +     + E   
Sbjct: 195 HKNQNVVVSATLPQEILEMTNKFMNDPIKFLVKRDELTLEGIKQFFILVEKEEWKFETLC 254

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+Y+ I +      + ++   T +  + L+  + E+N  +  +H E+   ER +I++D R
Sbjct: 255 DLYNTITIT-----QAVIFCNTIKAVKWLSGKMREQNFSLCSIHGELNQKERDKIMQDFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G++ VLV  ++   GLD+ +  +V   D        ++   I  IGR+ R     V I 
Sbjct: 310 NGEYRVLVATDIWGRGLDVQQVSVVINYD-----LPTNRELYIHRIGRSGRFGRKGVAIN 364

Query: 689 YADTITKSIQLAIDE 703
           +      S    I++
Sbjct: 365 FVKNEDVSALRDIEQ 379


>gi|83858471|ref|ZP_00951993.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83853294|gb|EAP91146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 480

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 15/188 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVE-----QIIRPTGLVDPPV--EIRSARTQVEDVYDE 574
           R  T+  SAT    E++      +      ++ RP    D      +R +  Q     + 
Sbjct: 177 RRQTLFFSAT-MPGEIKHLVDTFLRDPERVEVTRPAQTADTITQFILRVSDNQARTKREA 235

Query: 575 INLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +  A  +      ++    KR  + +   L         +H ++   +R + + + + G+
Sbjct: 236 LRAAINRDGVKNGIIFCNRKRDVDIVARSLQRHGFSAAPIHGDLDQSQRTKTLAEFKSGE 295

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             +LV  ++   GLDIP    V  +D       R+    +  IGR  R       +   +
Sbjct: 296 LRLLVASDVAARGLDIPAVSHVFNVD-----IPRNADDYVHRIGRTGRAGQKGEAVTLVS 350

Query: 693 ITKSIQLA 700
              +  LA
Sbjct: 351 SEDNKALA 358


>gi|312978402|ref|ZP_07790144.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           crispatus CTV-05]
 gi|310894745|gb|EFQ43817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           crispatus CTV-05]
          Length = 495

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 13/194 (6%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEI 575
           R  T++ SAT   P     E+         I+   L    +E   +R+  ++  D+   +
Sbjct: 175 RQQTLLFSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRL 234

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L  L+   TKR  ++LT  L  R      +H ++    R+ +++  R GK D+
Sbjct: 235 IDVQGPDL-ALVFGRTKRRVDELTRGLQARGYNAAEIHGDLSQARRMSVLKRFREGKLDI 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   + + + +     
Sbjct: 294 LVATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRTGRAGQNGISVTFVTPNE 348

Query: 695 KSIQLAIDETTRRR 708
                 I++ T+++
Sbjct: 349 IGYMRTIEQLTKKK 362


>gi|306838409|ref|ZP_07471254.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. NF
           2653]
 gi|306406549|gb|EFM62783.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. NF
           2653]
          Length = 455

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 152 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 201

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 202 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 261

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 262 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 321

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 322 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 371


>gi|56756857|gb|AAW26600.1| SJCHGC06283 protein [Schistosoma japonicum]
          Length = 402

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 72/184 (39%), Gaps = 21/184 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              +++SAT     LE     +   +        +   G+    V +     + +   D+
Sbjct: 203 TQVVLLSATMPHEILEMTSKFMTNPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 262

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TKR    LTE + + N  V  MH ++   ER +I++D R G
Sbjct: 263 YDTLTVT-----QSVIFCNTKRKVAWLTEKMLKNNFTVASMHGDMVQKEREKIMKDFRAG 317

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
              VL+  +L   G+D+ +  LV   D        ++   I  IGR+ R     V +   
Sbjct: 318 DSRVLITTDLWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFV 372

Query: 692 TITK 695
               
Sbjct: 373 KTDD 376


>gi|302508978|ref|XP_003016449.1| hypothetical protein ARB_04738 [Arthroderma benhamiae CBS 112371]
 gi|291180019|gb|EFE35804.1| hypothetical protein ARB_04738 [Arthroderma benhamiae CBS 112371]
          Length = 635

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 7/129 (5%)

Query: 578 AAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            ++ G R   L+  +      DLT    E  +  RY+  +     R + +   R  +F V
Sbjct: 269 RSKAGERKSTLVFCVDIAHVRDLTAKFREIGVDARYITGQTPKDVRAKELEAFRNYEFPV 328

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   L  EG DIP    V +    +     SK  LIQ IGR  R    K   +   +  
Sbjct: 329 LVNCGLFTEGTDIPNIDCVLLARPTR-----SKNLLIQMIGRGLRLHPDKTNCHIIDMVA 383

Query: 696 SIQLAIDET 704
           S+   +  T
Sbjct: 384 SLNCGVLTT 392


>gi|302895469|ref|XP_003046615.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256727542|gb|EEU40902.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 637

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 6/138 (4%)

Query: 568 VEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + D+     +A   G +  L+  +      +LTE   +     RY+  +   +ER E + 
Sbjct: 254 INDITVRSWMAKAPGRKSTLVFCVDVAHVVELTERFRKHGFDARYVTGDTPKVERGETLD 313

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R  +F VLV   +  EG DIP    + +    +     S+  L+Q IGR  R    K 
Sbjct: 314 AFRNSEFPVLVNCGVFTEGTDIPNIDCIILGRPTR-----SRNLLVQMIGRGMRLHPGKK 368

Query: 687 ILYADTITKSIQLAIDET 704
             +   +  S+   I  T
Sbjct: 369 NCHVIDLVSSLDTGIVTT 386



 Score = 42.4 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 13/113 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR------PAIVMAPNKILA 206
           Q   I+ +L  +    K   +   TGSGKT    ++I+ +          +++A  + L 
Sbjct: 31  QEECISSVLDSLEQGHKRVGISLATGSGKTVIFTQLIDKVPSISKEATQTLILAHRRELV 90

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 259
            Q     +  +P+  +E  +               D  +    SI  Q DR+R
Sbjct: 91  EQAAHHCQRAYPNKTIEIEMGNVHATG------TADITVASVRSITSQ-DRLR 136


>gi|168042111|ref|XP_001773533.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675235|gb|EDQ61733.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 600

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 20/194 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT    E+++     +   I          T L+   VE      +   + D I
Sbjct: 334 QTMLFSAT-FPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQDVDKRSMLMDLI 392

Query: 576 NLAAQ-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  +      Q    L+ V TK+ A+ L ++L         +H +    ER   +R  R 
Sbjct: 393 HAQSALAPPGQQTLTLVFVETKKGADALEDWLCRLGFPATTIHGDRSQQEREHALRSFRT 452

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-Y 689
           G   +LV  ++   GLDIP    V   D             +  IGR  R   S V   +
Sbjct: 453 GVTPILVATDVAARGLDIPHVAHVVNFD-----LPSDIDDYVHRIGRTGRAGKSGVATAF 507

Query: 690 ADTITKSIQLAIDE 703
            +   +++   + E
Sbjct: 508 FNEKDQALARPLTE 521


>gi|325192108|emb|CCA26569.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
 gi|325192439|emb|CCA26875.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 648

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 14/215 (6%)

Query: 483 ISGMYRGDFHRKATLAEYGFRLP--SCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
           +          K    + G R+      +     F  +   R  T++ SAT      +  
Sbjct: 344 LKTNEMNLRLCKYICLDEGDRMLDLGFDEEVSAIFNHFTSQR-QTLLFSATMPQKFQDFA 402

Query: 541 QGIIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           + ++V+ +    G      +D   E+   + Q   +   +    + G  +++    K   
Sbjct: 403 KQVLVKPVFVNVGRAGAANLDVIQEVEYVK-QDAKIVYLLECLQKTGPPVMIFCEKKGDV 461

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           +D+ EYL  + I+   +H      ER E I   + G+ DVL+  ++  +GLD P+   V 
Sbjct: 462 DDIYEYLILKGIQAVGIHGGKDQKERNEAIDLFKNGQKDVLIATDIAAKGLDFPDIKHVI 521

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
             D   E       + +  IGR  R   + V    
Sbjct: 522 NFDMPAE-----IENYVHRIGRTGRCGKTGVATTF 551


>gi|218259702|ref|ZP_03475335.1| hypothetical protein PRABACTJOHN_00994 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224948|gb|EEC97598.1| hypothetical protein PRABACTJOHN_00994 [Parabacteroides johnsonii
           DSM 18315]
          Length = 372

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 80/195 (41%), Gaps = 29/195 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       E I++   +     ++R     +ED
Sbjct: 128 QTIMFSATMPPKIRTLAQTILKNPEEVKIAISRPPETIMQTAYVCYDMQKLRI----LED 183

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           ++ +      +  R+++   +K   ++L   L      V  MHS+++  +R E++++ + 
Sbjct: 184 LFSQ-----SRPQRVIIFSSSKMKVKELASTLKRMKFNVAAMHSDLEQSQREEVMKEFKN 238

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVIL 688
           G+ D+LV  +++  G+DI +  LV   D             +  IGR AR  N     I 
Sbjct: 239 GRIDILVATDVVSRGIDINDIKLVINFD-----IPHDPEDYVHRIGRTARGTNGEGLAIT 293

Query: 689 YADTITKSIQLAIDE 703
           +  T  +     I+E
Sbjct: 294 FISTEEQFQFKRIEE 308


>gi|328717963|ref|XP_001951743.2| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 556

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 92/256 (35%), Gaps = 37/256 (14%)

Query: 457 PPPTLFEYIPED-------SLLFVDESHVTI-----PQISGMYRGDFHRKATLAEYGFRL 504
            P  L +++  +       + L +DE+   +     PQI  +       +  L  +    
Sbjct: 231 TPGRLLDFLESERTNMCRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQVLM-WSATW 289

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           P  + N     EE+        + S T             ++QI+      D   ++ S 
Sbjct: 290 PKEVKNLA---EEFLDEYIQINIGSLT-------LAANHNIQQIVEVCQEYDKETKLISL 339

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++ D         +   + ++ + TKR  +++T  +         +H +    ER  +
Sbjct: 340 LKKIMD---------EDENKTIVFIETKRRVDEITRKIKRHGYSAVCIHGDKSQYERDNV 390

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           ++D R  ++ +LV  ++   GLD+ +   V   D     +  +    +  IGR  R+  +
Sbjct: 391 LKDFRDSRYPILVATDVAARGLDVEDVKFVINFD-----YPNNSEDYVHRIGRTGRSHKT 445

Query: 685 KVILYADTITKSIQLA 700
                  T + + Q A
Sbjct: 446 GTAYTFFTQSNAKQAA 461


>gi|306843924|ref|ZP_07476519.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO1]
 gi|306275679|gb|EFM57403.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO1]
          Length = 455

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 152 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 201

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 202 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 261

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 262 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 321

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 322 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 371


>gi|296111234|ref|YP_003621616.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
 gi|295832766|gb|ADG40647.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
          Length = 532

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 89/258 (34%), Gaps = 17/258 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +        E I I    L    V+   +R    +  D    I  
Sbjct: 176 QTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIFD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                L  ++   TKR  E+L+  L  R      +H ++    R  ++   +  + ++LV
Sbjct: 236 VQAPKL-AIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-S 696
             ++   GLD+ +   V   D       +   S +  IGR  R     V +      +  
Sbjct: 295 ATDVAARGLDVKDVSHVYNFD-----IPQDPESYVHRIGRTGRAGAKGVSVTLVAPNEMD 349

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
              A+++ T++R   LE           +K    EV   +   D       +D      S
Sbjct: 350 YLRAVEDLTKKRMTALEPASLQEARVGKIKNAAGEVDQIVNAVDVKDIQSEVDKLTSKYS 409

Query: 757 KKKGKAHL----KSLRKQ 770
            ++  A L      L KQ
Sbjct: 410 SEQLAAALLSSVADLEKQ 427


>gi|269795126|ref|YP_003314581.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269097311|gb|ACZ21747.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
          Length = 614

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 72/205 (35%), Gaps = 24/205 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-------IRSARTQVEDVYDEIN 576
              + SAT         Q  + + +          V        +   R +V  +   + 
Sbjct: 206 QVALFSATMPPQIRRVAQHHMRQPVEIAVSRQSSTVTSVTQQYAVVPFRHKVGSLTRVL- 264

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            A       ++   T+  AE++   L ER I    +  +V   +R +I+  LR G  DVL
Sbjct: 265 -ATSDADAAIVFCRTRGAAEEVGSALIERGISAATISGDVAQKDREKIVERLRAGALDVL 323

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLD+   GLV   D   E       + +  IGR  R   + V L   T    
Sbjct: 324 VATDVAARGLDVDRIGLVVNFDIPGE-----PEAYVHRIGRTGRAGRTGVALSFVTPN-- 376

Query: 697 IQLAIDETTRRREKQLEHNKKHNIN 721
                    R R KQ+E   +  + 
Sbjct: 377 --------ERGRLKQIERTIRQQLV 393


>gi|237793963|ref|YP_002861515.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Ba4 str.
           657]
 gi|229261675|gb|ACQ52708.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Ba4 str.
           657]
          Length = 425

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 29/197 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
                ++ SAT    E+ +    IV+  IR        VE+    + V+ +  E+    +
Sbjct: 179 KIRQNLLFSAT-MPSEITKLVDSIVKDPIR--------VEVTPVSSTVDTITQEVYHVRK 229

Query: 581 QGLRIL--------------LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +  R L              +   TKR A  + + L E  I    +H       R   + 
Sbjct: 230 KQKRALLKHLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALN 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + + GK  VLV  ++   G+D+ E   V   +           + +  IGR  R     V
Sbjct: 290 NFKEGKIRVLVATDIAARGIDVNELSHVFNYN-----LPDVPETYVHRIGRTGRAGAKGV 344

Query: 687 -ILYADTITKSIQLAID 702
            I + D        AI+
Sbjct: 345 AISFCDIEETKSLKAIE 361


>gi|212537071|ref|XP_002148691.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210068433|gb|EEA22524.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 666

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 80/214 (37%), Gaps = 26/214 (12%)

Query: 568 VEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           V DV     L      R  L+  +       LTE   +  I  RY+ +      R E + 
Sbjct: 288 VNDVTVRSWLTHASDRRSTLVFCVDIEHVRQLTEAFRDNGIDARYITANTPRQTRNEELE 347

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             + G++ VL+   L  EG DIP    V +    +     SK+ LIQ IGR  R    K 
Sbjct: 348 AFKKGEYPVLLNCGLFTEGTDIPNIDCVVLARPTR-----SKSLLIQMIGRGLRLHPQKE 402

Query: 687 ILYADTITKSIQLAIDET------------TRRREKQLEHNKKHNI-NPQSVKEKIMEV- 732
             +   +  ++   I  T              +  K ++  K+H   +P      I +  
Sbjct: 403 NCHIIDMVSTLNTGIMSTPTLFGLDPDEALNTQSVKDIQKRKEHEDFDP-----DIPDAG 457

Query: 733 -IDPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
            I P+  +D   T  + D+    L+ ++   H++
Sbjct: 458 YIRPLGDDDVDVTFTTYDSVFDLLNDERVDRHIR 491



 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ------RPAIVMAPNKILA 206
           Q  +I  +++ +        L   TGSGKT    ++I  +          +++A  K L 
Sbjct: 65  QEESIQSVIENLGKGHNRLGLSLATGSGKTVIFTQLIHRIPPRNGRADQTLIIAHRKELV 124

Query: 207 AQLYSEFKNFFPHNAVE 223
            Q     +  +P   VE
Sbjct: 125 EQAARHCRLAYPDKTVE 141


>gi|156544419|ref|XP_001607535.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 52
           [Nasonia vitripennis]
          Length = 596

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L + L    I V  +HS+    +R  ++R  R GK  VL+   L+  
Sbjct: 388 VLVFVQSKERAQELFKELIYDGINVDLIHSDRTQTQRDNVVRCFREGKIWVLICTELMGR 447

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE 703
           G+D     LV   D     F  S  S I  IGR  R  +  K I +      +   +I  
Sbjct: 448 GIDFIGVNLVINYD-----FPPSAISYIHRIGRTGRAGHKGKAITFFTEQDTTNLRSIAA 502

Query: 704 TTR 706
             R
Sbjct: 503 VMR 505


>gi|42521946|ref|NP_967326.1| putative ATP-dependent RNA helicase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574476|emb|CAE77980.1| putative ATP-dependent RNA helicase [Bdellovibrio bacteriovorus
           HD100]
          Length = 412

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 11/181 (6%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR----TQVEDVYDEIN 576
            R  T+  SAT      +     +    IR     + PV           +++D    + 
Sbjct: 178 KRHQTLFFSATINPEIKKLAFSQVRSSAIRIQISPEDPVSKNITHFVMHVEMDDKRFFLA 237

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              +Q    + ++ V T+  AE + + L    ++   +H E    +R E+++  R G   
Sbjct: 238 EYLRQNPDGKFIIFVRTRVRAERVAKALARVEVQSLTLHGEKDQTDRAEVMKTFRKGDCK 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+  +L   G+DIP+   V   D           + +  IGR  R  N  V +   +  
Sbjct: 298 ILIATDLSARGIDIPDVTHVINYD-----LPEKPENYVHRIGRTGRGFNKGVAVSFCSTE 352

Query: 695 K 695
           +
Sbjct: 353 E 353


>gi|308162755|gb|EFO65133.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           P15]
          Length = 391

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 21/189 (11%)

Query: 524 TTIVVSATPGSWELEQCQGI--------IVEQIIRPTGLVDPPVEIRSA--RTQVEDVYD 573
             ++VSAT     LE  +          + E  +   G+    V+++ A     VED+Y 
Sbjct: 194 QIVLVSATLPPEILELTRQFMRDPVSILVKEAELTLDGIRQYVVDLQDAWKAEVVEDIYK 253

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            ++   QQG   ++   +    ++L E L      +  +HSE+   ER +I+ + R G+ 
Sbjct: 254 VLS--VQQG---VIFCNSIGRVKELAEKLKSAGHTLSCIHSELDQAERNKIMGEFRSGQT 308

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
            +L+  N++  G+D+    LV   D  +E       + +  IGR+ R     V I +   
Sbjct: 309 RILIATNIIARGIDVQNVSLVINYDIPRE-----PETYLHRIGRSGRFGRKGVAINFVTE 363

Query: 693 ITKSIQLAI 701
             K    AI
Sbjct: 364 KDKQSMQAI 372


>gi|194745552|ref|XP_001955251.1| GF16329 [Drosophila ananassae]
 gi|190628288|gb|EDV43812.1| GF16329 [Drosophila ananassae]
          Length = 784

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 17/177 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE----------IRSARTQVEDVYD 573
            T++ SAT      E     +   I    G V    E           +  R+ + D+  
Sbjct: 479 QTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEQDKRSYLLDLLS 538

Query: 574 EINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            I    +  +    L+ V TK+ A+ L E+L++ N  V  +H +    ER E +R  R G
Sbjct: 539 SIRNGPEYCKDNLTLIFVETKKGADSLEEFLFQCNHPVTSIHGDRTQKEREEALRCFRSG 598

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              +LV   +   GLDIP    V   D             +  IGR  R  N  V  
Sbjct: 599 DCPILVATAVAARGLDIPHVKHVINFD-----LPSDVEEYVHRIGRTGRMGNLGVAT 650


>gi|164687595|ref|ZP_02211623.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
           16795]
 gi|164603369|gb|EDQ96834.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
           16795]
          Length = 541

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 89/254 (35%), Gaps = 34/254 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE----QIIRP----TGLVDPPVEIRSARTQVEDVYDEI 575
            T   SAT     LE  +    E    +++R       +    +E R    ++E +   I
Sbjct: 180 QTTFFSATMPKEILELTKLYQHEPEIIKVVRKELTVPNIKQFYIETR-RANKLEVLCRLI 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++   +    ++   TKR +++L   L  R      +H ++K  +R  ++   R G  D+
Sbjct: 239 DVYNPK--LSVVFCNTKRGSDELVSELQARGYFADALHGDLKQTQRDIVMDKFRQGTIDI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+D+ +  +V   D       + +   +  IGR  R     V  ++    K
Sbjct: 297 LVATDVAARGIDVDDVDMVFNYD-----LPQDEEYYVHRIGRTGRAGREGV-SFSFVYGK 350

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
            ++  + +  R  +                 + +   I  I   +           + ++
Sbjct: 351 EMRK-MRDIERYTK----------------CKLVKHSIPTIADVEEKKVAAFFKQVKDTV 393

Query: 756 SKKKGKAHLKSLRK 769
           ++      +  +  
Sbjct: 394 NESNLAKQINWVEA 407


>gi|328789292|ref|XP_001120427.2| PREDICTED: probable ATP-dependent RNA helicase DDX52-like, partial
           [Apis mellifera]
          Length = 512

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 6/123 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L   L    I V  +H++    +R  ++R  R GK  VL+   L+  
Sbjct: 327 VLVFVQSKERAQELFNELIYDGINVDVIHADRTQTQRDNVVRCFREGKIWVLICTELMAR 386

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE 703
           G+D     LV   D     F  S  S I  IGR  R  +  K I +      +   +I  
Sbjct: 387 GIDFKGINLVINYD-----FPSSAISYIHRIGRTGRAGHKGKAITFFTEQDTTNLRSIAT 441

Query: 704 TTR 706
             R
Sbjct: 442 IMR 444


>gi|167041390|gb|ABZ06143.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
           HF4000_005K23]
          Length = 427

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 9/184 (4%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVE--DVYD 573
           ++   +  T++ SAT     L+  +  + + I IR      P  +I+    QV   D Y+
Sbjct: 170 KFVPKKHQTLLFSATLPQNILKITERYLNDPIRIRVGSTTTPISKIKQEVIQVSEGDKYN 229

Query: 574 EINLAA-QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++     ++   ILL V TKR A+ + + L++   R   MH  ++  +R   +   R GK
Sbjct: 230 KLQEELYKRKGSILLFVKTKRNADKMADRLHDDGHRCDCMHGNLRQSKRQRTLIAFRSGK 289

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             +L+   L   GLD+P    V           +     I  IGR AR       L   T
Sbjct: 290 IRILISTELASRGLDVPSIQHVINYH-----LPQVPEDFIHRIGRTARAGAEGCALTFIT 344

Query: 693 ITKS 696
               
Sbjct: 345 PNDR 348


>gi|118092589|ref|XP_421574.2| PREDICTED: similar to Gu protein [Gallus gallus]
          Length = 690

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 85/209 (40%), Gaps = 23/209 (11%)

Query: 515 FEEWNCLRPTTIVVSATPGSW-----------ELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           +++ +   P T++ SAT   W           E EQ   I  +     T +    ++ RS
Sbjct: 300 YKKGSENSPQTLLFSATCPRWVYDVAKKYMKGEYEQVDLIGKKTQRTATTVEHLAIQCRS 359

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           ++ + E + D I + +    R ++   TK+ A +L           + +H ++   +R  
Sbjct: 360 SQ-RAEVLGDIIQVYSGSHGRTIVFCETKKEANELA-LNSALKQEAQSLHGDIPQKQREV 417

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            ++  R G F+VL+  N+   GLDIPE  LV      K+       S I   GR  R   
Sbjct: 418 TLKGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDV-----DSYIHRSGRTGRAGR 472

Query: 684 SK-VILYADTITKSIQLAIDE----TTRR 707
           +   I +     + +   +++    T RR
Sbjct: 473 TGICICFYQRKEEDLLKQVEQKAGITFRR 501


>gi|17987217|ref|NP_539851.1| ATP-dependent RNA helicase RHLE [Brucella melitensis bv. 1 str.
           16M]
 gi|225852555|ref|YP_002732788.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis ATCC 23457]
 gi|256044711|ref|ZP_05447615.1| DEAD/DEAH box helicase domain protein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|17982889|gb|AAL52115.1| ATP-dependent RNA helicase rhle [Brucella melitensis bv. 1 str.
           16M]
 gi|225640920|gb|ACO00834.1| DEAD/DEAH box helicase domain protein [Brucella melitensis ATCC
           23457]
          Length = 535

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 232 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 281

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 282 LAERLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 341

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 342 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 401

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 402 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 451


>gi|289613420|emb|CBI59610.1| unnamed protein product [Sordaria macrospora]
          Length = 580

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 9/162 (5%)

Query: 549 IRPTGLVDPPVEIRSARTQ---VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           ++    ++  VE+   R +   + ++  E    +Q+  RIL+  L K+ A  + ++L  +
Sbjct: 380 LQANSRIEQKVEVVDPRGKEFRLYEILKEAQKGSQKDDRILVFCLYKKEAVRVEQFLTRK 439

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            ++V  +H +++  +R   +   + G   VLV  ++   GLDIPE  LV  +      F 
Sbjct: 440 GMKVASIHGDLRQDQRTRSLEAFKSGSTSVLVATDVAARGLDIPEVKLVVNV-----TFP 494

Query: 666 RSKTSLIQTIGRAARNVN-SKVILYADTITKSIQLAIDETTR 706
            +    +  IGR  R     K I       K+   ++    R
Sbjct: 495 LTIEDYVHRIGRTGRAGKLGKAITLFTEHDKAHSGSLVNILR 536


>gi|328773151|gb|EGF83188.1| hypothetical protein BATDEDRAFT_29188 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 472

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 8/139 (5%)

Query: 566 TQVEDVYDEINLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
            Q E     +    Q+GLR  +L+ V +   A++L   L    I V  MHSE    +R  
Sbjct: 258 GQEEGKLIAMRQLIQEGLRPPVLIFVQSIDRAKELFHELVYDGINVDVMHSERTQTQRDT 317

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           II++ R GK  VL+   L+  G+D     LV   D     F ++  S +  IGR  R   
Sbjct: 318 IIKNFRCGKIWVLIATELMARGIDFKGVNLVINYD-----FPQTVQSYVHRIGRTGRAGR 372

Query: 684 SK-VILYADTITKSIQLAI 701
           +   I Y           I
Sbjct: 373 TGEAITYFTKEDAPYLKNI 391


>gi|313887420|ref|ZP_07821109.1| putative ATP-dependent RNA helicase RhlE [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332299626|ref|YP_004441547.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312923062|gb|EFR33882.1| putative ATP-dependent RNA helicase RhlE [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176689|gb|AEE12379.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 438

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 11/173 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA---- 579
             ++ SAT     L+  + I+V+ ++    +  PP  I        D      + +    
Sbjct: 182 QHVMFSATMPKEILKLSESILVDPVLVELAVAKPPKSIMQTAYICYDAQKLPIIRSLFTN 241

Query: 580 --QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              +  R ++   TK     L + L    + V  MHS++    R E++RD R+G+  VLV
Sbjct: 242 PESEVSRTIIFAGTKATVHALAQTLSRDGLPVAEMHSDLSQERREEVLRDFRMGRIKVLV 301

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
             +++  G+DI +  +V   +  ++         +  IGR AR  + K +   
Sbjct: 302 ATDIVARGIDIDDIAVVINYEVPRD-----FEDYVHRIGRTARGADGKGLAIT 349


>gi|162605920|ref|XP_001713475.1| eukaryotic initiation factor 4a [Guillardia theta]
 gi|6690142|gb|AAF24007.1|AF083031_4 eukaryotic initiation factor 4a [Guillardia theta]
          Length = 385

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 8/151 (5%)

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           G+    + I     +++ V + I    +    I+  V T+R  E L   + +    V Y+
Sbjct: 224 GIKQFYIAIEKEEWKLDSVIE-IYSKIKITQSIIY-VNTRRKTEWLANIMKKYGFDVGYL 281

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H E+  ++R  +++D R G F +L+  +L+  G+DI +  LV   D  K      K   I
Sbjct: 282 HGEMLQIDRSSVMKDFRSGLFRILISTDLVSRGIDIQQVCLVINYDLPKL-----KEVYI 336

Query: 673 QTIGRAARNVNSKV-ILYADTITKSIQLAID 702
             IGR+ R     V I +      SI  +I+
Sbjct: 337 HRIGRSGRFGRKGVAINFLSRSDVSILRSIE 367


>gi|34498347|ref|NP_902562.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34104201|gb|AAQ60560.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 439

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 9/141 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TK  +E+L + L ++      +H ++    R   + DLR G+  VLV  ++  
Sbjct: 247 QCVIFSATKAYSEELADKLSDQGYSAACLHGDMPQSWRNRTLNDLRRGRIKVLVATDVAA 306

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAID 702
            G+D+P    V   D  K+         +  IGR  R       I  A++        I+
Sbjct: 307 RGIDVPTITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRDGTAITLAESKEFHKVRRIE 361

Query: 703 ETTRRREKQLEHNKKHNINPQ 723
           +  +R   Q+       + P 
Sbjct: 362 QYLKR---QITEGVIDGLEPT 379


>gi|325676644|ref|ZP_08156320.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
 gi|325552534|gb|EGD22220.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
          Length = 453

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 13/198 (6%)

Query: 523 PTTIVVSAT--PGSWEL-EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL-- 577
               + SAT  P   ++ +Q     VE  ++        +  R  +   +   D +    
Sbjct: 190 KQVALFSATMPPAIRKISKQYLHDPVEITVKAKTATASNITQRWVQVAHQRKLDALTRIL 249

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +    +++ V TK+  EDL E L  R      ++ ++   +R   I  L+ G  D+LV
Sbjct: 250 EVESFEAMIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILV 309

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLD+     V   D           S +  IGR  R   +   +L+     + 
Sbjct: 310 ATDVAARGLDVDRISHVVNYD-----IPHDTESYVHRIGRTGRAGRTGDALLFVAPRERH 364

Query: 697 IQLAIDETTRR--REKQL 712
           +  +I+ TTR+   E QL
Sbjct: 365 LLKSIERTTRQPLTEIQL 382


>gi|265994970|ref|ZP_06107527.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|262766083|gb|EEZ11872.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 455

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 152 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 201

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 202 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 261

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 262 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 321

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 322 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 371


>gi|227494914|ref|ZP_03925230.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
 gi|226831366|gb|EEH63749.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
          Length = 528

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 85/236 (36%), Gaps = 28/236 (11%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTT---IVV 528
            +D     + Q+ G+          + + GF LP          E      P T   ++ 
Sbjct: 182 LIDLLKRKVLQLHGVNTVVLDEADEMLDLGF-LPDV--------EILLSRVPQTRQTMLF 232

Query: 529 SAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD--------EINLAA 579
           SAT PG       + +     IR     D    +++ +  +   +          I  A 
Sbjct: 233 SATMPGEIVALARRYMKQPTHIRAQEADDQGATVKTVKQVIYRCHALNKIEVVARILQAR 292

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++GL  ++   TKR A  L+E L  R   V  +H ++    R + +R  R GK DVLV  
Sbjct: 293 ERGL-AVIFTKTKRTAATLSEDLSARGFAVASLHGDLGQGAREQAMRAFRSGKVDVLVAT 351

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           ++   G+D+ +   V             +   +  IGR  R   S   + + D   
Sbjct: 352 DVAARGIDVDDVTHVINYQC-----PEDEKIYLHRIGRTGRAGASGTAVTFVDWDD 402


>gi|307703246|ref|ZP_07640192.1| helicase conserved C-terminal domain protein [Streptococcus oralis
           ATCC 35037]
 gi|307623321|gb|EFO02312.1| helicase conserved C-terminal domain protein [Streptococcus oralis
           ATCC 35037]
          Length = 291

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 76/200 (38%), Gaps = 16/200 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV 
Sbjct: 3   VEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVA 62

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R   S   I +        
Sbjct: 63  TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGY 117

Query: 698 QLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
              I+  T++R K       +     K  +  + ++    +       E  A     + A
Sbjct: 118 LQIIENLTKKRMKGLKPATAEEAFQAKKQVALKKIERDFADEAIRGNFEKFAKDARKLAA 177

Query: 751 QQLSLSKKKGKAHLKSLRKQ 770
           +    S ++   ++ SL  Q
Sbjct: 178 EF---SPEELAMYILSLTVQ 194


>gi|260168758|ref|ZP_05755569.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           F5/99]
          Length = 535

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 232 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 281

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 282 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 341

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 342 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGSSH 401

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 402 VVNYDPPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 451


>gi|253326818|gb|ACT31323.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Rattus norvegicus]
          Length = 728

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 540 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 599

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + DT + + 
Sbjct: 600 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDNH 651


>gi|255559772|ref|XP_002520905.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223539871|gb|EEF41450.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 407

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 72/183 (39%), Gaps = 21/183 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             +++SAT  +  LE     + + I        +   G+    V +     + +   D+Y
Sbjct: 209 QVVLISATLPNEILEMTSKFMTDPIKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 268

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + + G 
Sbjct: 269 DTLTIT-----QAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFQSGT 323

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V +    
Sbjct: 324 TRVLITTDVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVK 378

Query: 693 ITK 695
              
Sbjct: 379 SDD 381


>gi|261408394|ref|YP_003244635.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|329929405|ref|ZP_08283153.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
 gi|261284857|gb|ACX66828.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
 gi|328936492|gb|EGG32937.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
          Length = 533

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 97/268 (36%), Gaps = 30/268 (11%)

Query: 524 TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT           +  E     ++ + +    +    +E+   R + E +   +
Sbjct: 177 QTLLFSATMPANIQKLASQFLKEPEHVSVIPKHVSAPLIDQAYIEV-PERQKFEALSRLL 235

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++  +     ++   TKR  ++L E L +R      +H ++   +R  ++R  R G  DV
Sbjct: 236 DM--ESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDV 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLD+     V   D       +   S +  IGR  R         +     
Sbjct: 294 LVATDVAARGLDVSGVTHVVNFD-----LPQDPESYVHRIGRTGRAGKEGTAWSFVTPRE 348

Query: 695 KSIQLAIDETTRRR-------EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
                 I+  TR R               K  I    + E+++E+I+   L +     I 
Sbjct: 349 MDHLYFIERVTRHRIPRKPLPTIAEAIEGKQRI----IAERVLEIIEQGELTEYKGLAIQ 404

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAA 775
           +  Q  S+  +   A +K L      A+
Sbjct: 405 LLEQYDSV--QLLAAAMKILTGDKKEAS 430


>gi|145491061|ref|XP_001431530.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398635|emb|CAK64132.1| unnamed protein product [Paramecium tetraurelia]
          Length = 532

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 67/180 (37%), Gaps = 13/180 (7%)

Query: 514 RFEEWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---- 568
           + + +      T+  SAT P + +   C     E I    G  +  +     +  +    
Sbjct: 238 KIDSYIREDRQTVFFSATWPKTVQNLACDLCHNEPINLYIGSQEVTINKNITQETICLYQ 297

Query: 569 ---EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
              ++    I        ++L+ V TK+  EDL  YL E       +H +    +R  ++
Sbjct: 298 NEKQEELLYILEELSNKDKVLIFVETKKDCEDLASYLSEHGFFCMSLHGDKTQQQRDYVM 357

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           ++ +  K  +L   ++   GLD+ +  LV   D     F     + +  IGR  R  +  
Sbjct: 358 KEFKASKCKLLCATDVASRGLDVRDISLVINYD-----FPNQIDNYVHRIGRTGRAGDKG 412


>gi|168023701|ref|XP_001764376.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684528|gb|EDQ70930.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 689

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 88/236 (37%), Gaps = 32/236 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV--EIRSARTQVEDVY--------- 572
            T++ SAT  +W        I  + ++ T      V  E   A   V  +          
Sbjct: 295 QTLLFSATLPTW-----VQQIARKFLKATRKTVDLVGDEKMKASNSVRHLLLPGHYSMRT 349

Query: 573 ---DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
               ++      G RI++   TK  A +L   L  ++   R +H ++   +R   ++  R
Sbjct: 350 QLVQDVISCYGSGGRIIVFTETKNDASELAGAL--KSGTARALHGDIPQNQREVTLQGFR 407

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            GKF VLV  ++   GLDI +  LV   +  ++       + I   GR  R  N+ V +L
Sbjct: 408 TGKFSVLVATDVAARGLDINDVQLVIQCEPPRD-----AETYIHRSGRTGRAGNTGVSVL 462

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
           + D   + +   I+     R+   +  +     P  + +         +L  + T 
Sbjct: 463 FFDRKKEYMVPQIE-----RKAGFKFERIAAPQPLDIAKASGNTATDSVLAVSDTV 513


>gi|300727714|ref|ZP_07061100.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
 gi|299775002|gb|EFI71608.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
          Length = 555

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 15/199 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS------ARTQVEDVYDEINL 577
            TI+ SAT    ++E     +++  I     V  P E           TQ   +  +I  
Sbjct: 183 QTIMFSAT-MPEKIEDLAKTLLKNPIEIKLAVSKPAEKIKQSAYICYETQKLGIIKDIFK 241

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A     R+++   +K   + +   L  ++I    MHS++   ER +I+   + G+ DVLV
Sbjct: 242 AGDLK-RVIVFCGSKTKVKQVNSALQRKHINSGEMHSDLTQEERNDIMYKFKAGQLDVLV 300

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             +++  G+DI +  +V   D             +  IGR AR     V +   +     
Sbjct: 301 ATDIVSRGIDIDDITMVINYDV-----PHDTEDYVHRIGRTARADRDGVAITLVSEEDQF 355

Query: 698 QLAIDETTRRREKQLEHNK 716
                +T +  EK+++ NK
Sbjct: 356 YF--QQTEKFLEKEIQKNK 372


>gi|242035801|ref|XP_002465295.1| hypothetical protein SORBIDRAFT_01g035760 [Sorghum bicolor]
 gi|241919149|gb|EER92293.1| hypothetical protein SORBIDRAFT_01g035760 [Sorghum bicolor]
          Length = 618

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 92/262 (35%), Gaps = 32/262 (12%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      D+    F+ +   R  T++ SAT         +  +V+ +    G  
Sbjct: 340 RLVDLGFE-----DDIKEVFDHFKDQR-QTLLFSATMPQKIQNFAKNALVKPVTVNVGRA 393

Query: 555 ----VDPPVEIRSARTQVED--VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
               +D   E+   +   ED  +   +    +    +L+    K   + + EYL  + + 
Sbjct: 394 GAANLDVIQEVEYVK---EDARIIYLLECLQKTPPPVLIFCENKADVDYIHEYLLLKGVE 450

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H      ER   I   + G+ DVLV  ++  +GLD P+   V   D   E      
Sbjct: 451 AVAIHGGKDQEERQNAIDSFKTGRKDVLVATDVASKGLDFPDIQHVINYDMPAE-----I 505

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            + +  IGR  R   + +        ++    +D       K L    K  I P      
Sbjct: 506 ENYVHRIGRTGRCGKTGIATTFINKNQTETTLLD------LKHLLKEAKQRIPPV----- 554

Query: 729 IMEVIDPILLEDAATTNISIDA 750
           + E+ DP+  E+       +  
Sbjct: 555 LAELNDPLEDEEIIAKESGVKG 576


>gi|118092587|ref|XP_001232052.1| PREDICTED: similar to Gu protein [Gallus gallus]
          Length = 713

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 91/255 (35%), Gaps = 30/255 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT  +W  +      + +   V+ I R T      VE  +           + 
Sbjct: 316 PQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRKTQKAATTVEHLAIECHWSQRAAVIG 375

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A +L           + +H ++   +R   ++  R G 
Sbjct: 376 DVIQVYSGSYGRTIVFCETKKDANELA-LNASIKQDCQSLHGDIPQKQREITLKGFRNGA 434

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + + +    
Sbjct: 435 FKVLVATNVAARGLDIPEVDLVVQSSPPKDV-----ESYIHRSGRTGRAGRTGICICFY- 488

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                        R+ E QL +   K  I  + V       I     +DA     S+   
Sbjct: 489 ------------QRKEENQLRYVEVKAGITFKRVGVPTATDIIKASSKDAIRCLDSVPQT 536

Query: 752 QLSLSKKKGKAHLKS 766
            +   K+  +  ++ 
Sbjct: 537 AIEYFKESAQLLIEE 551


>gi|58265474|ref|XP_569893.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108955|ref|XP_776592.1| hypothetical protein CNBC0850 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74686072|sp|Q5KJJ2|FAL1_CRYNE RecName: Full=ATP-dependent RNA helicase FAL1
 gi|50259272|gb|EAL21945.1| hypothetical protein CNBC0850 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226125|gb|AAW42586.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 396

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     LE     + + +        +   G+    V +     + +   D
Sbjct: 196 ATQVVVVSATLPHDVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCD 255

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LTE + E N  V  MH E+   ER  I+ + R 
Sbjct: 256 LYDTLTIT-----QAVIFCNTRRKVDWLTEKMREANFTVSSMHGEMVQKERDAIMAEFRG 310

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+  VL+  ++   G+D+ +  LV   D        S+ + +  IGR+ R     V +  
Sbjct: 311 GQSRVLITTDVWARGIDVQQVSLVINYD-----LPTSRENYLHRIGRSGRFGRKGVAINF 365

Query: 691 DTITK 695
            T+  
Sbjct: 366 VTVDD 370


>gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
 gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
          Length = 695

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 6/157 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TK+  E++ + L  R  +   ++ ++    R   +  LR G+ D+LV  ++   
Sbjct: 352 IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVATDVAAR 411

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+    LV   D           S +  IGR  R       IL+     K +   I++
Sbjct: 412 GLDVERISLVVNYD-----IPHDTESYVHRIGRTGRAGRDGEAILFVTPREKYMLRQIEK 466

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
            TR++ + +      ++N    +    ++ + I  ED
Sbjct: 467 ATRQKVEPMHMPTAQDVNSSRKQRFAEQITETIETED 503


>gi|224370609|ref|YP_002604773.1| DeaD [Desulfobacterium autotrophicum HRM2]
 gi|223693326|gb|ACN16609.1| DeaD [Desulfobacterium autotrophicum HRM2]
          Length = 616

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 80/225 (35%), Gaps = 14/225 (6%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
              + SAT   P      +      +  IR        +  R    +     D +    +
Sbjct: 195 QVALFSATMPAPIKKIAIKYLTDPKDVFIRLRTATADTIRQRFWMVKGTHKLDALTRILE 254

Query: 581 QG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                 I++ V TK    +L E L  R      ++ ++    R   I   + GK D+LV 
Sbjct: 255 AETFDAIIVFVRTKTATVELAEKLEARGYAAVALNGDIAQKARERTIDRFKKGKIDILVA 314

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLD+     V   D           S +  IGR  R   +   IL+     + +
Sbjct: 315 TDVAARGLDVERVSHVINYD-----IPNGAESYVHRIGRTGRAGRAGDAILFVSPRERWM 369

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSV---KEKIMEVIDPILLE 739
              I++TTR++ + ++      IN + +    + I + +    L+
Sbjct: 370 LKVIEKTTRQQIEMMKLPSTEAINDKRIADFNQSITDTLASKELD 414


>gi|242812468|ref|XP_002485963.1| DEAD/DEAH box RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218714302|gb|EED13725.1| DEAD/DEAH box RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 582

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 61/320 (19%), Positives = 103/320 (32%), Gaps = 28/320 (8%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISG--MYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
            P  L +++ +  +L +     TI   +   +        A L   G           + 
Sbjct: 261 TPGRLIDFMGQTHVLSLRRVRYTIVDEADELLNTDWETEFAQLLSGGDSNEDADHRYMMF 320

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS--ARTQVEDVY 572
              +N                  +  +   V   +  TG     +E R   A  Q +   
Sbjct: 321 SATFNKTCRQVA----------KKHLETGYVRIRVGRTGSSHANIEQRIIYAEDQTKMQC 370

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               L +    R L+ V TK  A+ L +YL+   +    +HS+    ER + +   R GK
Sbjct: 371 LYDLLLSMPPARTLIFVNTKVQADRLDDYLFNLGLPSTSIHSDRTQREREDAMSAFRTGK 430

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             +L+   +   GLDI     V   D             +  IGR AR  N  +      
Sbjct: 431 SPILIATGVSARGLDIKNVMHVVNFDLPSYDQG-GIDEYVHRIGRTARIGNEGIATSLYN 489

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINP------QSVKEKIMEVIDPILLEDAATTNI 746
             ++  +A     R   K L  NK+  + P      +   E + +  +  + ED   TN+
Sbjct: 490 HGRNTDIA-----RDLVKLLLENKQ--VVPDFLEELKPEGELVFDDDNSDVEEDIDETNV 542

Query: 747 SIDAQQLSLSKKKGKAHLKS 766
             D Q       +    L  
Sbjct: 543 DADPQSTHSGPVEDAPELDE 562


>gi|188996905|ref|YP_001931156.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931972|gb|ACD66602.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 405

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 71/182 (39%), Gaps = 11/182 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
             ++ SAT     L+  +  + E      ++P  +    ++    R    D + ++    
Sbjct: 182 QNLLFSATMPKEILDLAEEFLNENYETIRVKPDEVTVEKIKQIIYRVNPRDKFKKLTEVL 241

Query: 580 QQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            Q    ++++   TK  A++L E L E       +H +    +R  ++ + R GK  +LV
Sbjct: 242 SQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKILV 301

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI    LV        G  R   S I  IGR  R       +   T ++  
Sbjct: 302 ATDVAARGLDIKGVDLVINY-----GLPRDAESYIHRIGRTGRAGREGTAISIMTPSEDK 356

Query: 698 QL 699
           QL
Sbjct: 357 QL 358


>gi|126315120|ref|XP_001365663.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 700

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 73/184 (39%), Gaps = 18/184 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE---------QIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E+++  G  ++         Q+      V   V      ++ E + + 
Sbjct: 448 QTLMFSAT-FPEEIQRLAGEFLKTDYLFVAVGQVGGACSDVQQTVLQVGQYSKREKLVEI 506

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +    +   R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  
Sbjct: 507 LRNIGE--ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCP 564

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           VLV  ++   GLDI     V   D        +    +  IGR  R  N  K I + D  
Sbjct: 565 VLVATSVAARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNIGKAISFFDPE 619

Query: 694 TKSI 697
             S 
Sbjct: 620 PDSH 623


>gi|56552313|ref|YP_163152.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241761630|ref|ZP_04759717.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753995|ref|YP_003226888.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|56543887|gb|AAV90041.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241373938|gb|EER63471.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258553358|gb|ACV76304.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 458

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 75/218 (34%), Gaps = 18/218 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPT 552
            + + GF       +   R ++       T+  SAT      E     + + +   + P 
Sbjct: 164 QMLDLGFI------HALRRIDKLLPKNRQTLFFSATMPKTIQELSSQFLSDPVTVSVAPQ 217

Query: 553 GLVDPPVEIR-SARTQVE-DVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRV 609
                 VE       Q E      I L    GL R L+   TK  A+ +  +L    +  
Sbjct: 218 SSTAERVEQFGIFVNQSEKQALLTITLKNTPGLDRALVFTRTKHGADRVVRHLEAAGLPA 277

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H      +R   +   R G+  +LV  ++   G+D+P    V   +           
Sbjct: 278 AAIHGNKSQPQRERALNAFRNGRLKILVATDIAARGIDVPGVSHVFNYE-----LPNVAE 332

Query: 670 SLIQTIGRAARNV-NSKVILYADTITKSIQLAIDETTR 706
             +  IGR AR   + + I +     +S   +I+  TR
Sbjct: 333 QYVHRIGRTARAGRDGQAISFIANDERSYLRSIERLTR 370


>gi|71018173|ref|XP_759317.1| hypothetical protein UM03170.1 [Ustilago maydis 521]
 gi|74701966|sp|Q4P9P3|DRS1_USTMA RecName: Full=ATP-dependent RNA helicase DRS1
 gi|46099167|gb|EAK84400.1| hypothetical protein UM03170.1 [Ustilago maydis 521]
          Length = 932

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 10/179 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V +K++A  L        +    +H ++   +RI+ + D R GK D L+  +L  
Sbjct: 613 QTMIFVRSKKLAHQLKIVFGLLGLSAGELHGDLSQEQRIDALTDFRDGKTDFLLATDLAS 672

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLDI     V   D    G   +    +    RA RN  + V L  +   + ++LAI  
Sbjct: 673 RGLDIKGVQTVINYDMP--GQFEAYLHRVGRTARAGRNGRA-VTLVGEADRRMLKLAI-- 727

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKA 762
                +K      KH I P +V   + E ++ +  E  A      + + L +++ + K 
Sbjct: 728 -----KKSSAEQIKHRIIPSAVAAHMCETLERLKPEVDAVLREEKEEKALRIAEMELKK 781


>gi|310794364|gb|EFQ29825.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 695

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ L+++L  +N     +H +    ER   +   R G+  +LV   +   
Sbjct: 454 TLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEFFRNGRCPILVATAVAAR 513

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           GLDIP    V   D             +  IGR  R  N+ 
Sbjct: 514 GLDIPNVTHVVNYD-----LPTDIDDYVHRIGRTGRAGNTG 549


>gi|168183325|ref|ZP_02617989.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Bf]
 gi|182673470|gb|EDT85431.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Bf]
          Length = 425

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 29/197 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
                ++ SAT    E+ +    IV+  IR        VE+    + V+ +  E+    +
Sbjct: 179 KIRQNLLFSAT-MPSEITKLVDSIVKDPIR--------VEVTPVSSTVDTITQEVYHVRK 229

Query: 581 QGLRIL--------------LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +  R L              +   TKR A  + + L E  I    +H       R   + 
Sbjct: 230 KQKRALLKHLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALN 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + + GK  VLV  ++   G+D+ E   V   +           + +  IGR  R     V
Sbjct: 290 NFKEGKIRVLVATDIAARGIDVNELSHVFNYN-----LPDVPETYVHRIGRTGRAGAKGV 344

Query: 687 -ILYADTITKSIQLAID 702
            I + D        AI+
Sbjct: 345 AISFCDIEETKSLKAIE 361


>gi|302845088|ref|XP_002954083.1| hypothetical protein VOLCADRAFT_82651 [Volvox carteri f.
           nagariensis]
 gi|300260582|gb|EFJ44800.1| hypothetical protein VOLCADRAFT_82651 [Volvox carteri f.
           nagariensis]
          Length = 612

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 79/196 (40%), Gaps = 22/196 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT    E+++     +   +          T L+   +E  S+  +   + D I
Sbjct: 345 QTLMFSAT-FPKEIQRLAADFLSNYVFLTVGRVGSSTDLIVQHIEYVSSDEKQNTLLDLI 403

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +    +GL  L+ V TKR A++L   L    +    +H +    +R   +R  + GK  V
Sbjct: 404 STV--EGL-TLVFVETKRGADELERILTRNQLPATSIHGDRSQEQREMALRSFKSGKTPV 460

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYAD-- 691
           +V  ++   GLDIP    V   D  K+         +  IGR  R  +       + D  
Sbjct: 461 MVATDVAARGLDIPHVTHVINYDLPKD-----IDDYVHRIGRTGRAGHKGLATAFFTDAD 515

Query: 692 -TITKSIQLAIDETTR 706
             + +S+   + ET +
Sbjct: 516 APLARSLVEVLTETNQ 531


>gi|225849264|ref|YP_002729428.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644065|gb|ACN99115.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 397

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 67/187 (35%), Gaps = 27/187 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG- 582
             ++ SAT     LE  Q  + E            ++++     VE +   I     +  
Sbjct: 180 QNLLFSATMPKEILELAQEFLNEDY--------QTIKVKPDEITVEKIKQIIYRVDPKNK 231

Query: 583 -------------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                         + ++   TK  A+ L+E L +    V  +H +    +R  ++ + R
Sbjct: 232 FNKLIEVLSQNQAEKTIIFTQTKLEADQLSEDLSKEGFSVSAIHGDFSQKKRETVLHNFR 291

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GK  +LV  ++   GLDI    LV        G  ++  S +  IGR  R       + 
Sbjct: 292 TGKLKILVATDVAARGLDIKGVELVINY-----GLPKNAESYVHRIGRTGRAGKEGTAIS 346

Query: 690 ADTITKS 696
             T ++ 
Sbjct: 347 IPTPSED 353


>gi|224104457|ref|XP_002333939.1| predicted protein [Populus trichocarpa]
 gi|222839273|gb|EEE77610.1| predicted protein [Populus trichocarpa]
          Length = 238

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 16/166 (9%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   +D+ EYL  + +    +H      ER   I   + GK DVLV  ++  +
Sbjct: 47  VLVFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASK 106

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P+   V   D   E       + +  IGR  R   + +        +S    +D  
Sbjct: 107 GLDFPDIQHVINYDMPAE-----IENYVHRIGRTGRCGKTGIATTFINKNQSETTLLD-- 159

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                K L    K  I P      + E+ DP+   D  T+   +  
Sbjct: 160 ----LKHLLQEAKQRIPPV-----LAELNDPMEDGDTITSASGVKG 196


>gi|17545671|ref|NP_519073.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
 gi|17427964|emb|CAD14654.1| putative atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 608

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 9/146 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR A+ L E L E       +H ++    R   +  LR G+  VLV  ++  
Sbjct: 295 QAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNRTLTALRRGQLRVLVATDVAA 354

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAID 702
            G+D+P+   V   D  K+         +  IGR  R   S + +       + Q   I+
Sbjct: 355 RGIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGIAINLVNHGDTFQWRRIE 409

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEK 728
               RR   ++      + P+   + 
Sbjct: 410 RFVDRR---IDATVVEGLEPKRSPKP 432


>gi|281346961|gb|EFB22545.1| hypothetical protein PANDA_001614 [Ailuropoda melanoleuca]
          Length = 765

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 100/254 (39%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSAT------PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVY- 572
           P T++ SAT        + +  +     V+ I + T      VE   I+   TQ   V  
Sbjct: 342 PQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIG 401

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++ +  +    + +H ++   +R   ++  R G 
Sbjct: 402 DVIRVYSGFHGRTIIFCETKKEAQELSQNVSIKQ-DAQSLHGDIPQKQREITLKGFRNGD 460

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + + +    
Sbjct: 461 FGVLVATNVAARGLDIPEVDLVVQSSPPKDV-----ESYIHRSGRTGRAGRTGICICFYQ 515

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QLA          Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 516 HKEEYQLA----------QVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 563

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 564 VSHFKQSAEKLIEE 577


>gi|265984119|ref|ZP_06096854.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|264662711|gb|EEZ32972.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 462

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 159 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 208

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 209 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 268

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 269 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 328

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 329 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 378


>gi|121701983|ref|XP_001269256.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|143359917|sp|A1CQA9|PRP5_ASPCL RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|119397399|gb|EAW07830.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 1192

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 91/252 (36%), Gaps = 28/252 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     +E I+    +V P +    E+R+  T+   + + + 
Sbjct: 740 QTVLFSATFPRNMEALARKALTKPIEIIVGGRSVVAPEITQIVEVRNEDTKFVRLLEILG 799

Query: 577 LA----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                 A +  R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 800 NLYSDDANEDARSLIFVERQEAADALLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGI 859

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VL+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 860 FPVLIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 912

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNI--NPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K +    P+ V++ +   ++ +       +      
Sbjct: 913 --------LTEEQERYSVDIAKALKQSGQQVPEPVQKMVDSFLEKVKAGKEKASASGFGG 964

Query: 751 QQLSLSKKKGKA 762
           + L    ++  A
Sbjct: 965 KGLERLDQERDA 976


>gi|322391693|ref|ZP_08065161.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
 gi|321145504|gb|EFX40897.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
          Length = 523

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 98/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVQFMKEPKHVKIAAKELTTELVD-QYYIRVKEQEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K ++  + ++    +  D  +  +    +   
Sbjct: 349 GYLQIIENLTKKRMKGLKPATAEEAFQAKKHVALKKIER---DFADETIRGNFDKFSKDA 405

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
                  S ++   ++ +L  Q
Sbjct: 406 RKLAAEFSPEELAMYILTLTVQ 427


>gi|301785421|ref|XP_002928123.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 3
           [Ailuropoda melanoleuca]
          Length = 692

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 508 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 567

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 568 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNH 619


>gi|301785419|ref|XP_002928122.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Ailuropoda melanoleuca]
          Length = 706

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 522 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 581

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 582 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNH 633


>gi|301785417|ref|XP_002928121.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Ailuropoda melanoleuca]
          Length = 729

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 542 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 601

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 602 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNH 653


>gi|297817166|ref|XP_002876466.1| hypothetical protein ARALYDRAFT_486301 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322304|gb|EFH52725.1| hypothetical protein ARALYDRAFT_486301 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 18/192 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT    E+++     +   I          T L+   +E      +   + D +
Sbjct: 338 QTMLFSAT-FPREIQRLAADFMSNYIFLAVGRVGSSTDLITQRIEFVQESDKRSHLMDLL 396

Query: 576 NLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +   +   +    L+ V TKR A+ L  +L         +H +    ER   +R  + G+
Sbjct: 397 HAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKSGR 456

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YAD 691
             +LV  ++   GLDIP    V   D             +  IGR  R   S +   + +
Sbjct: 457 TPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKSGIATAFFN 511

Query: 692 TITKSIQLAIDE 703
                +   + E
Sbjct: 512 ENNAQMARLLAE 523


>gi|281337523|gb|EFB13107.1| hypothetical protein PANDA_018037 [Ailuropoda melanoleuca]
          Length = 491

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 332 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 391

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 392 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNH 443


>gi|260564054|ref|ZP_05834540.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260154070|gb|EEW89162.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
          Length = 510

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 232 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 281

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 282 LAERLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 341

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 342 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 401

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 402 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 451


>gi|156720285|dbj|BAF76795.1| vasa-related protein [Enchytraeus japonensis]
          Length = 516

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 69/183 (37%), Gaps = 12/183 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSAR-TQVEDVYDEINLA 578
            T++ SAT    E++     ++   +  T    G  +  +E       Q +     I+L 
Sbjct: 265 QTLMFSAT-FPEEVQSLARELLNDYLFVTVGRVGGANTDIEQMVYNVGQFDKRQKLIDLL 323

Query: 579 AQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                 R+L+ V  KR A+ L  +L +  +    +H + +  ER   + D + G+  +LV
Sbjct: 324 NACPNERVLVFVEQKRNADFLASFLSQSELPTTSIHGDREQREREIALNDFKSGRKPILV 383

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDIP    V   D  KE         +  IGR  R  N              
Sbjct: 384 ATSVAARGLDIPGVMHVVNYDMPKE-----IDEYVHRIGRTGRCGNMGKATTFFNPETDA 438

Query: 698 QLA 700
            LA
Sbjct: 439 GLA 441


>gi|41055130|ref|NP_957372.1| eukaryotic initiation factor 4A-III [Danio rerio]
 gi|82209617|sp|Q7ZVA6|IF4A3_DANRE RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|28277876|gb|AAH45939.1| Eukaryotic translation initiation factor 4A, isoform 3 [Danio
           rerio]
 gi|182892106|gb|AAI65833.1| Eif4a3 protein [Danio rerio]
          Length = 406

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 77/194 (39%), Gaps = 22/194 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
                ++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 206 ATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 265

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 266 LYDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 320

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  ++   GLD+ +  L+   D        ++   I  IGR+ R     V I +
Sbjct: 321 GASRVLISTDVWARGLDVSQVSLIINYD-----LPNNRELYIHRIGRSGRYGRKGVAINF 375

Query: 690 ADTITKSIQLAIDE 703
                  I   I++
Sbjct: 376 VKNDDIRILRDIEQ 389


>gi|73949725|ref|XP_544339.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
           [Canis familiaris]
          Length = 725

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 541 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 600

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 601 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNH 652


>gi|313893137|ref|ZP_07826714.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442490|gb|EFR60905.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 523

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 9/191 (4%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEI--NL 577
             T++ SAT      +  +  + E  +   +PT +    +E      Q    +D +    
Sbjct: 177 HQTLLFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLF 236

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  +++TE L +R      +H ++   +R  +IR  R G  D+LV
Sbjct: 237 DIQTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILV 296

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D  ++    S T  +   GRA +        +        
Sbjct: 297 ATDVAARGLDISGVSHVYNYDMPQD--PESYTHRVGRTGRAGKAGQ--AFTFVIPREMEH 352

Query: 698 QLAIDETTRRR 708
             AI+  T+R+
Sbjct: 353 LHAIERLTKRK 363


>gi|304403848|ref|ZP_07385510.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304346826|gb|EFM12658.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 546

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 90/252 (35%), Gaps = 26/252 (10%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA- 579
            T++ SAT  P    L Q      E + + P  +  P ++           ++ ++    
Sbjct: 177 QTMLFSATMPPNIQRLAQTFLNNPEHVSVIPKQVSAPLIDQAYIEVHERQKFEALSRLID 236

Query: 580 -QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +     ++   TKR  ++L+E L +R      +H ++   +R  ++R  R G  DVLV 
Sbjct: 237 MESPELAIIFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLD+     V   D       +   S +  IGR  R         +        
Sbjct: 297 TDVAARGLDVSGVTHVINFD-----LPQDPESYVHRIGRTGRAGKEGTAWSFVTPRETDH 351

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
              I++ TR           H I     ++ +  + + I  +   T    ID  Q   ++
Sbjct: 352 LHFIEKVTR-----------HKIT----RKPLPSIAEAIEGKQRVTAERLIDIVQNEGNQ 396

Query: 758 KKGKAHLKSLRK 769
           +     +  L +
Sbjct: 397 EYKGIAIHLLEQ 408


>gi|225627526|ref|ZP_03785563.1| DEAD-box ATP dependent DNA helicase [Brucella ceti str. Cudo]
 gi|225617531|gb|EEH14576.1| DEAD-box ATP dependent DNA helicase [Brucella ceti str. Cudo]
          Length = 549

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 246 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 295

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 296 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 355

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 356 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGSSH 415

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 416 VVNYDPPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 465


>gi|302873918|ref|YP_003842551.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689833|ref|ZP_07632279.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302576775|gb|ADL50787.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
           743B]
          Length = 374

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 15/201 (7%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEIN 576
             +  T+  SAT  S   +     + + I   I+   +    ++     T      + + 
Sbjct: 172 SKKRQTLCFSATLNSDVKKLAYRYMNDPITVTIKKEEVTLSTIKQHVVETTDRRKQNALC 231

Query: 577 LAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               +      ++   TKR A+DL   LY+R      +HS++   +R  I++  R   F 
Sbjct: 232 AVLDEDNPFMAIIFCRTKRRADDLEVGLYQRGYNCAKLHSDIPQSKRERIMKAFRNADFQ 291

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTI 693
            L+  ++   GLDI     +   D        S  S I  IGR  R         + D  
Sbjct: 292 YLIATDVAARGLDISGVTHIYNYD-----IPESVESYIHRIGRTGRAGEEGYTCLFIDPK 346

Query: 694 TKSIQLAIDETTR----RREK 710
              +   I+E  +    RR+ 
Sbjct: 347 NNDMLEEIEEALKFQIPRRQV 367


>gi|119896607|ref|YP_931820.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119669020|emb|CAL92933.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 447

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 74/196 (37%), Gaps = 30/196 (15%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT     L+   G +  ++ R        +EI S   +  ++   +  A   G 
Sbjct: 181 QTLLFSAT-----LDGVVGALANKLTRNPQR----IEIASTEAKRGNIEQRLMFADDMGH 231

Query: 584 R---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +                ++   TK+ A++L+  L E+      +H ++    R   ++ L
Sbjct: 232 KSRLLEALLGTDGLQQAVVFTATKKSADELSLSLQEKGFSAAALHGDMHQTVRNRTLQRL 291

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G+  VLV  ++   G+D+     V   D  ++         +  IGR  R     + +
Sbjct: 292 RQGRIGVLVATDVAARGIDVAGISHVINFDPPRQV-----EDYVHRIGRTGRAGRDGIAI 346

Query: 689 YADTITKS-IQLAIDE 703
                 ++ +  AI+ 
Sbjct: 347 TLSGPRETGLIRAIER 362


>gi|148230348|ref|NP_001079703.1| similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA
           helicase, 68kDa) [Xenopus laevis]
 gi|28838521|gb|AAH47981.1| MGC53795 protein [Xenopus laevis]
          Length = 607

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 69/181 (38%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-----PPVEIRSA--RTQVEDVYDEIN 576
            T++ SAT      +  +  + E +    G ++       ++I       + +D    + 
Sbjct: 270 QTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCNDGEKDDKLVRLM 329

Query: 577 LAA--QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                ++  + ++ V TKR  +DLT  L         +H +    ER  ++ + + GK  
Sbjct: 330 EEIMSEKENKTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSP 389

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+  ++   GLD+ +   V   D     +  S    I  IGR AR+  +       T  
Sbjct: 390 ILIATDVASRGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSSKTGTAYTFFTPG 444

Query: 695 K 695
            
Sbjct: 445 N 445


>gi|71995514|ref|NP_001021793.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|51988117|gb|AAU20831.1| Vasa- and belle-like helicase protein 1, isoform c, partially
           confirmed by transcript evidence [Caenorhabditis
           elegans]
          Length = 660

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 10/127 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TKR A +L  +L  + IR   +H ++K +ER   +   R G+  +LV   +   
Sbjct: 401 VLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAAR 460

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI--LYADT---ITKSIQL 699
           GLDIP    V   D             +  IGR  R  N  +    + D    I + ++ 
Sbjct: 461 GLDIPNVRHVINYD-----LPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKN 515

Query: 700 AIDETTR 706
            I E+ +
Sbjct: 516 LIVESNQ 522


>gi|17510307|ref|NP_491112.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|14574398|gb|AAK68520.1|AC024810_19 Vasa- and belle-like helicase protein 1, isoform b, confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 644

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 10/127 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TKR A +L  +L  + IR   +H ++K +ER   +   R G+  +LV   +   
Sbjct: 385 VLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAAR 444

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI--LYADT---ITKSIQL 699
           GLDIP    V   D             +  IGR  R  N  +    + D    I + ++ 
Sbjct: 445 GLDIPNVRHVINYD-----LPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKN 499

Query: 700 AIDETTR 706
            I E+ +
Sbjct: 500 LIVESNQ 506


>gi|17510309|ref|NP_491113.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|7332077|gb|AAF60764.1| Vasa- and belle-like helicase protein 1, isoform a, confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 641

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 10/127 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TKR A +L  +L  + IR   +H ++K +ER   +   R G+  +LV   +   
Sbjct: 382 VLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAAR 441

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI--LYADT---ITKSIQL 699
           GLDIP    V   D             +  IGR  R  N  +    + D    I + ++ 
Sbjct: 442 GLDIPNVRHVINYD-----LPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKN 496

Query: 700 AIDETTR 706
            I E+ +
Sbjct: 497 LIVESNQ 503


>gi|71033289|ref|XP_766286.1| eukaryotic translation initiation factor 4A [Theileria parva strain
           Muguga]
 gi|68353243|gb|EAN34003.1| eukaryotic translation initiation factor 4A, putative [Theileria
           parva]
          Length = 394

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 73/189 (38%), Gaps = 16/189 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
             ++VSAT     +E     +            +   G+    + +   + + + + D  
Sbjct: 196 QVVLVSATLPHDVIEITNKFMNNPFKVLVKRDELTLEGIKQFFISVEKEQWKFDTLCDLY 255

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   + ++   TK   + L + + + N  V  MH E+   ER +I++  R G+  V
Sbjct: 256 ESLIIT--QAVIFCNTKEKVDWLAKKMKDGNFEVCKMHGEMSQKERNDIMQRFRKGESRV 313

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           L+  +L   GLD+ +  LV   D        S+ S I  IGR+ R     V I +     
Sbjct: 314 LISTDLWGRGLDVQQVSLVVNYD-----LPNSRESYIHRIGRSGRYGRKGVAINFVKDDD 368

Query: 695 KSIQLAIDE 703
             I   I++
Sbjct: 369 IRILRDIEQ 377


>gi|322377346|ref|ZP_08051837.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M334]
 gi|321281546|gb|EFX58555.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M334]
          Length = 524

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 98/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVD-QYYIRVKEQEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K ++  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPASAEEAFQAKKHVALKKIERDFADETIRANFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    + ++   ++ SL  Q
Sbjct: 409 AAEF---TPEELAMYILSLTVQ 427


>gi|320589959|gb|EFX02415.1| eukaryotic initiation factor 4a-12 [Grosmannia clavigera kw1407]
          Length = 403

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     LE     + + +        +   GL    + +     + +   D
Sbjct: 202 ATQVVVVSATLPQDVLEMTYKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCD 261

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R 
Sbjct: 262 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMRESNFTVSSMHGDMPQKERDSIMQDFRQ 316

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
               VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 317 FNTRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 371

Query: 691 DTITK 695
            T   
Sbjct: 372 VTNED 376


>gi|297595326|gb|ADI48178.1| vasa [Crepidula fornicata]
          Length = 502

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 39/242 (16%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNR----- 511
            P  L ++        ++   +++ ++  +   +  R     + GF  PS          
Sbjct: 191 TPGRLLDF--------IERGKISVKKVKFLILDEADRM---LDMGFE-PSIRKLVESLGM 238

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV--------DPPVEIRS 563
           P + E        T++ SAT  +   +     + + +    G+V           +E+  
Sbjct: 239 PSKSER------QTLMFSATFKAEIQQLAADFMNDYLFITVGIVGGACSDVEQTFLEV-D 291

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              + E + D +N +     R+L+ V  KR A+ L  +L +       +H +    ER E
Sbjct: 292 RLQKREYLCDILNSSGTN--RVLVFVGQKRNADFLASFLSQSGYPTTSIHGDRLQREREE 349

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            + D + GK  VL+  N+   GLDIP+   V   D             +  IGR  R  N
Sbjct: 350 ALMDFKRGKSPVLIATNVAARGLDIPDVTHVVNYD-----LPTDIDEYVHRIGRTGRCGN 404

Query: 684 SK 685
             
Sbjct: 405 LG 406


>gi|261325143|ref|ZP_05964340.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261752356|ref|ZP_05996065.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261301123|gb|EEY04620.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261742109|gb|EEY30035.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
          Length = 462

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 159 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 208

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 209 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 268

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 269 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 328

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 329 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 378


>gi|326482407|gb|EGE06417.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Trichophyton
           equinum CBS 127.97]
          Length = 1182

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 87/252 (34%), Gaps = 28/252 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     +E I+    +V P +    E+R+   +   + + + 
Sbjct: 731 QTVLFSATFPRNMEALARKTLSKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLELLG 790

Query: 577 LAAQQGL----RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 791 NLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKAGI 850

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F +L+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 851 FPILIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 903

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K      P+ +++ +   +D +       +      
Sbjct: 904 --------LTEDQERYSVDISKALKQSGQPVPEPIQKMVNAFLDKVKEGKEKASGSGFGG 955

Query: 751 QQLSLSKKKGKA 762
           + L    ++  A
Sbjct: 956 KGLERLDQERDA 967


>gi|326476402|gb|EGE00412.1| Pre-mRNA-processing ATP-dependent RNA helicase prp5 [Trichophyton
           tonsurans CBS 112818]
          Length = 1182

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 87/252 (34%), Gaps = 28/252 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     +E I+    +V P +    E+R+   +   + + + 
Sbjct: 731 QTVLFSATFPRNMEALARKTLSKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLELLG 790

Query: 577 LAAQQGL----RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 791 NLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKAGI 850

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F +L+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 851 FPILIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 903

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K      P+ +++ +   +D +       +      
Sbjct: 904 --------LTEDQERYSVDISKALKQSGQPVPEPIQKMVNAFLDKVKEGKEKASGSGFGG 955

Query: 751 QQLSLSKKKGKA 762
           + L    ++  A
Sbjct: 956 KGLERLDQERDA 967


>gi|322828077|gb|EFZ32017.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
          Length = 621

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 87/247 (35%), Gaps = 23/247 (9%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIR--PTGLVDPPVEIRSARTQVE------DVYDE 574
             T++ SAT   W          ++ I     G +     I+  R +         + D 
Sbjct: 240 HQTLLFSATVPEWVHTCSFIPRKKEFIDMVGQGTMRAANTIKFYRRKCHFSEVSCMLADL 299

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           + + + +  R L+   TK+   DL+  +    +  + +H +++  +R   ++  R  KF 
Sbjct: 300 VKVYSGRHGRTLVFTNTKKECHDLS--INNTKLDSQCLHGDMQQEQRESTMKSFRDNKFS 357

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VL+  ++   GLD+P   LV               + I   GR  R     V +      
Sbjct: 358 VLIATDVAARGLDLPMVDLVIQCAP-----PTDIDAFIHRAGRTGRAGRKGVCVLLHQPK 412

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
                 ++   R  + + E      + P   +++I+  +     ED A    S     + 
Sbjct: 413 DEYI--VERIERHAKIKFE------VLPAPTRDEILRAVARDAAEDLARVERSATNLFMD 464

Query: 755 LSKKKGK 761
            + +  K
Sbjct: 465 QAAELLK 471


>gi|321253117|ref|XP_003192635.1| hypothetical protein CGB_C1160C [Cryptococcus gattii WM276]
 gi|317459104|gb|ADV20848.1| hypothetical protein CNBC0850 [Cryptococcus gattii WM276]
          Length = 396

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     LE     + + +        +   G+    V +     + +   D
Sbjct: 196 ATQVVVVSATLPHDVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCD 255

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LTE + E N  V  MH E+   ER  I+ + R 
Sbjct: 256 LYDTLTIT-----QAVIFCNTRRKVDWLTEKMREANFTVSSMHGEMVQKERDAIMAEFRG 310

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+  VL+  ++   G+D+ +  LV   D        S+ + +  IGR+ R     V +  
Sbjct: 311 GQSRVLITTDVWARGIDVQQVSLVINYD-----LPTSRENYLHRIGRSGRFGRKGVAINF 365

Query: 691 DTITK 695
            T+  
Sbjct: 366 VTVDD 370


>gi|212543663|ref|XP_002151986.1| RNA helicase (Dbp), putative [Penicillium marneffei ATCC 18224]
 gi|210066893|gb|EEA20986.1| RNA helicase (Dbp), putative [Penicillium marneffei ATCC 18224]
          Length = 554

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 80/210 (38%), Gaps = 23/210 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T + SAT    E+ Q     +   I+             +   VE+ S   + + +   
Sbjct: 305 QTCMWSAT-WPKEVRQLASDFLNDFIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKH 363

Query: 575 INLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +    + +  + L+   TKR+A+D+T +L +       +H + +  ER  ++++ + GK 
Sbjct: 364 LEKIMEDRKNKCLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLQEFKNGKS 423

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+ +   V   D     +  +    +  IGR  R       +   T 
Sbjct: 424 PIMVATDVASRGIDVRDITHVINYD-----YPNNSEDYVHRIGRTGRAGAKGTAITFFTT 478

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
             S Q        R    +    K  I+P+
Sbjct: 479 DNSKQA-------RDLVTILSEAKQQIDPR 501


>gi|228469533|ref|ZP_04054526.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           uenonis 60-3]
 gi|228308883|gb|EEK17558.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           uenonis 60-3]
          Length = 436

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 11/173 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA---- 579
             ++ SAT     L+  + I+V+ ++    +  PP  I        D      + +    
Sbjct: 182 QHVMFSATMPKEILKLSESILVDPVLVELAVAKPPKSIMQTAYICYDAQKLPIIRSLFAN 241

Query: 580 --QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              +  R ++   TK     L + L    + V  MHS++    R E++RD R+G+  VLV
Sbjct: 242 PESEVSRTIIFAGTKATVHALAQTLTRDGLPVAEMHSDLSQERREEVLRDFRMGRIKVLV 301

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
             +++  G+DI +  +V   +             +  IGR AR  + K +   
Sbjct: 302 ATDIVARGIDIDDIAVVINYEV-----PHDFEDYVHRIGRTARGADGKGLAIT 349


>gi|170016724|ref|YP_001727643.1| putative ATP-dependent RNA helicase [Leuconostoc citreum KM20]
 gi|169803581|gb|ACA82199.1| Putative ATP-dependent RNA helicase [Leuconostoc citreum KM20]
          Length = 522

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 95/269 (35%), Gaps = 39/269 (14%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +        E I I    L    V+   +R    +  D    I  
Sbjct: 176 QTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIFD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                L  ++   TKR  E+L+  L  R  R   +H ++    R  ++   +  + ++LV
Sbjct: 236 VQAPKL-AIVFGRTKRRVEELSRGLEARGYRAAGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-S 696
             ++   GLD+ +   V   D       +   S +  IGR  R     V +      +  
Sbjct: 295 ATDVAARGLDVKDVTHVYNFD-----IPQDPESYVHRIGRTGRAGAKGVSVTLVAPNEMD 349

Query: 697 IQLAIDETTRRR---------------EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
              A+++ T++R               + +   ++ HNI  ++   +I   +D +  + +
Sbjct: 350 YLRAVEDLTKKRMTPLEPASLKEARIGKIKNAADEVHNIVKKTDVSEIQTEVDKLTNQYS 409

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLRKQ 770
           +    +              + +  L KQ
Sbjct: 410 SEELAAA-----------LLSSVADLEKQ 427


>gi|229542534|ref|ZP_04431594.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
 gi|229326954|gb|EEN92629.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
          Length = 475

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 100/256 (39%), Gaps = 16/256 (6%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P     E+         ++   +  P +E    + Q  + +D ++    
Sbjct: 177 QTMLFSATMPDPIRKIAERFMNNPELVRVKAKEMTVPSIEQYYVKVQEREKFDVLSRLLD 236

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L   L  R      +H ++   +R+ ++R  + GK DVLV 
Sbjct: 237 VQSPDLAIVFGRTKRRVDELANALNLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVLVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS-I 697
            ++   GLDI     V   D       +   S +  IGR  R     + +   T  +   
Sbjct: 297 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGREGMAMTFVTPREMGY 351

Query: 698 QLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
              +++TT++R   +     ++      +   E+I E I    +++  +    + A+   
Sbjct: 352 LKTVEQTTKKRMLPMRPPTWDEAFEGQQRVTMERIGETIKEGNIDEYMSVAKELLAEYD- 410

Query: 755 LSKKKGKAHLKSLRKQ 770
              +   A LK + K+
Sbjct: 411 -PAEVTAAALKLMTKE 425


>gi|78186470|ref|YP_374513.1| DEAD/DEAH box helicase-like [Chlorobium luteolum DSM 273]
 gi|78166372|gb|ABB23470.1| ATP-dependent RNA helicase CsdA [Chlorobium luteolum DSM 273]
          Length = 590

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 6/157 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK M  +L E L  R      ++ ++   +R   +  L+ G  ++++  ++   
Sbjct: 252 MLIFVRTKTMTLELAEKLQARGYAAAALNGDMVQNQRERTVDQLKDGSLNIVIATDVAAR 311

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     K++  AI++
Sbjct: 312 GLDVERISHVINYDV-----PYDTESYVHRIGRTGRAGRSGEAILFVAPREKNMLYAIEK 366

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
            TR+R + +E      IN + +++    + D I  ED
Sbjct: 367 ATRKRIELMELPSTEIINDKRIEKFKQRISDTIAAED 403


>gi|325297782|ref|YP_004257699.1| DEAD/DEAH box helicase domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324317335|gb|ADY35226.1| DEAD/DEAH box helicase domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 418

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 84/210 (40%), Gaps = 26/210 (12%)

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           LP   + + + F      +   +  S      E++       ++II+   +         
Sbjct: 177 LP--KERQTIMFSATMPAKIQQLAQSILHDPAEVKLAVSKPADKIIQAAYIC-------- 226

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q   + + +    Q+  R+++   +K   +++T+ L    + V  MHS+++  +R E
Sbjct: 227 YEAQKLGIIESL-FRQQEPERVIIFASSKLKVKEVTKALKRLKLNVGEMHSDLEQSQRDE 285

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           I+ + R G+ ++LV  +++  G+DI +  LV   D             +  IGR AR  N
Sbjct: 286 IMHEFRNGRINMLVATDIVARGIDIDDIRLVINYDV-----PHDSEDYVHRIGRTARANN 340

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLE 713
               +            + E  + R KQ+E
Sbjct: 341 DGCAITF----------VSENEQTRFKQIE 360


>gi|189207078|ref|XP_001939873.1| ATP-dependent RNA helicase fal1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|330936277|ref|XP_003305321.1| hypothetical protein PTT_18129 [Pyrenophora teres f. teres 0-1]
 gi|187975966|gb|EDU42592.1| ATP-dependent RNA helicase fal1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|311317725|gb|EFQ86604.1| hypothetical protein PTT_18129 [Pyrenophora teres f. teres 0-1]
          Length = 399

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     LE     + + +        +   GL    + I     + +   D
Sbjct: 198 ATQVVVVSATLPYDVLEMTTKFMTDPVRILVKRDELTLEGLKQYFIAIEKEEWKFDTLCD 257

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R 
Sbjct: 258 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQRERDSIMQDFRQ 312

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
               VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 313 ANSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 367

Query: 691 DTITK 695
            T   
Sbjct: 368 VTQDD 372


>gi|118785473|ref|XP_314684.3| AGAP008578-PA [Anopheles gambiae str. PEST]
 gi|116127754|gb|EAA10198.3| AGAP008578-PA [Anopheles gambiae str. PEST]
          Length = 596

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 91/264 (34%), Gaps = 49/264 (18%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS---CMDNRPL 513
            P  L ++        +D  +VT   ++ +   +  R     + GF LPS    M +  +
Sbjct: 306 TPGRLLDF--------IDRGYVTFENVNFVVLDEADRM---LDMGF-LPSIEKVMGHATM 353

Query: 514 RFEEWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
                   +  T++ SAT P   E+++  G  +   I         V +        DV 
Sbjct: 354 P----EKQQRQTLMFSATFPA--EIQELAGKFLHNYI--------CVFVGIVGGACADVE 399

Query: 573 DEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
             I+L  +   R               L+ V TKR A+ L   + E       +H +   
Sbjct: 400 QTIHLVEKFKKRKKLEEILNGGNPKGTLVFVETKRNADYLASLMSETQFPTTSIHGDRLQ 459

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER   + D + G+ DVL+  ++   GLDI     V   D  K     S    +  IGR 
Sbjct: 460 REREMALYDFKSGRMDVLIATSVAARGLDIKNVNHVVNYDLPK-----SIDDYVHRIGRT 514

Query: 679 ARNVNSKVILYADTITKSIQLAID 702
            R  N               +A D
Sbjct: 515 GRVGNKGRATSFYDPEADRAMASD 538


>gi|213018866|ref|ZP_03334674.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212995817|gb|EEB56457.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 402

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 15/182 (8%)

Query: 521 LRPTTIVVSAT-PGSWELEQCQGIIVEQIIR------PTGLVDPPVEIRSARTQVEDVYD 573
               T++ SAT PG  E+ +     + Q  R       T  V    E+    ++ E    
Sbjct: 169 KIRQTLMFSATLPG--EIVKLTEKYLNQPERVSVDCQATTSVKIKQEVV-YASESEKYGK 225

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +    Q+   I++ V TKR A+ L + L++ +     +H +++  +R  +I   R G+ 
Sbjct: 226 LVTQLCQRKGSIIIFVKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRN 285

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   GLDIP    V   D       +S+   +  IGR AR       L   T 
Sbjct: 286 QIMVATDVASRGLDIPHIQHVINYDV-----PQSQADYVHRIGRTARAGAEGFALSFVTP 340

Query: 694 TK 695
             
Sbjct: 341 QD 342


>gi|189239274|ref|XP_969642.2| PREDICTED: similar to conserved hypothetical protein [Tribolium
            castaneum]
          Length = 1494

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 14/171 (8%)

Query: 524  TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVE-DVYDE 574
             T++ SAT  PG   L Q   +   QI      +  T  V   +EI     Q +   +  
Sbjct: 1267 QTVMTSATWPPGVRRLAQSYMVDPIQIYVGTLDLAATHTVTQIIEIIPDDDQEKFRTFMN 1326

Query: 575  INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                     +++     K  A++L+  L    ++ + +H +    +R + + D+  G   
Sbjct: 1327 FATNLDPSEKVIAFCGKKARADELSTELTLAGLQCQTIHGDRDQSDREQALLDIADGTVQ 1386

Query: 635  VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +L+  ++   GLDI +   V   D     F R+    +  +GR  R   S 
Sbjct: 1387 ILIATDVASRGLDIDDITHVINYD-----FPRNIEEYVHRVGRTGRAGKSG 1432


>gi|169615935|ref|XP_001801383.1| hypothetical protein SNOG_11134 [Phaeosphaeria nodorum SN15]
 gi|182676441|sp|Q0UAT0|FAL1_PHANO RecName: Full=ATP-dependent RNA helicase FAL1
 gi|160703076|gb|EAT81633.2| hypothetical protein SNOG_11134 [Phaeosphaeria nodorum SN15]
          Length = 374

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     LE     + + +        +   GL    + I     + +   D
Sbjct: 173 ATQVVVVSATLPYDVLEMTTKFMTDPVRILVKRDELTLEGLKQYFIAIEKEEWKFDTLCD 232

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R 
Sbjct: 233 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQRERDSIMQDFRQ 287

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
               VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 288 ANSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 342

Query: 691 DTITK 695
            T   
Sbjct: 343 VTQED 347


>gi|71406310|ref|XP_805705.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
 gi|70869212|gb|EAN83854.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
          Length = 660

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 87/247 (35%), Gaps = 23/247 (9%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIR--PTGLVDPPVEIRSARTQVE------DVYDE 574
             T++ SAT   W          ++ I     G +     I+  R +         + D 
Sbjct: 240 HQTLLFSATVPEWVHTCSFIPRNKEFIDMVGQGTMRAANTIKFYRRKCHFSEVSCMLADL 299

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           + + + +  R L+   TK+   DL+  +    +  + +H +++  +R   ++  R  KF 
Sbjct: 300 VKVYSGRHGRTLVFTNTKKECHDLS--INNTKLDSQCLHGDMQQEQRESTMKSFRDNKFS 357

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VL+  ++   GLD+P   LV               + I   GR  R     V +      
Sbjct: 358 VLIATDVAARGLDLPMVDLVIQCAP-----PTDIDAFIHRAGRTGRAGRKGVCVLLHQPK 412

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
                 ++   R  + + E      + P   +++I+  +     ED A    S     + 
Sbjct: 413 DEYI--VERIERHAKIKFE------VLPAPTRDEILRAVARDAAEDLARVERSATNLFME 464

Query: 755 LSKKKGK 761
            + +  K
Sbjct: 465 QAAELLK 471


>gi|327303796|ref|XP_003236590.1| DEAD box helicase [Trichophyton rubrum CBS 118892]
 gi|326461932|gb|EGD87385.1| DEAD box helicase [Trichophyton rubrum CBS 118892]
          Length = 654

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 7/129 (5%)

Query: 578 AAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            ++ G R   L+  +      DLT    E  +  RY+  +     R + +   R  +F V
Sbjct: 288 RSKAGERKSTLVFCVDIAHVRDLTAKFREIGVDARYITGQTPKDVRAKELEAFRNYEFPV 347

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   L  EG DIP    V +    +     SK  LIQ IGR  R    K   +   +  
Sbjct: 348 LVNCGLFTEGTDIPNIDCVLLARPTR-----SKNLLIQMIGRGLRLHPDKANCHIIDMVA 402

Query: 696 SIQLAIDET 704
           S+   +  T
Sbjct: 403 SLNCGVLTT 411


>gi|300120970|emb|CBK21212.2| unnamed protein product [Blastocystis hominis]
          Length = 617

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 73/191 (38%), Gaps = 18/191 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--IRSA-----RTQVEDVYDEIN 576
            T++ SAT         +  +   I    G +D  V   ++         Q  D   +I 
Sbjct: 372 QTLMWSATWPKEVQALARDFLTNPIQVNIGSLDLKVTDHVKQVIKCVTEGQKLDETLKIL 431

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +     R ++   +KR A++LT  L +R      +H + +  ER  ++ + + G+  ++
Sbjct: 432 RSKNPESRCIIFTQSKRGADELTRILRQRGFNALAIHGDKEQRERDFVLHEFKSGRVTIM 491

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK------VILYA 690
           V  ++   GLD+ +  +V   D     F       I  +GRA R           V  + 
Sbjct: 492 VATDVASRGLDVKDIRVVINYD-----FPSCVEDYIHRVGRAGRKTADGYSEGMAVSFFT 546

Query: 691 DTITKSIQLAI 701
           DT  K  +  I
Sbjct: 547 DTSAKVTRELI 557


>gi|299755458|ref|XP_001828678.2| DEAD box family helicase [Coprinopsis cinerea okayama7#130]
 gi|298411233|gb|EAU93182.2| DEAD box family helicase [Coprinopsis cinerea okayama7#130]
          Length = 635

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 11/122 (9%)

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             AQ+    L+  +  R  ++LT+      I  R +HS    +ER E++   R G+F VL
Sbjct: 272 DRAQKRKSTLVFCVDLRHVQELTDTFRRFGIDARNIHSHTPAVERRELVTAFRAGEFPVL 331

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR------NVNSKVILYA 690
           +   +L EG DIP    V +    K     S+   +Q IGR  R        +  +I + 
Sbjct: 332 INCAVLTEGADIPNIDCVLLARPTK-----SRNVFMQMIGRGMRLSPATGKQDCLIIDFV 386

Query: 691 DT 692
           D+
Sbjct: 387 DS 388


>gi|47195341|emb|CAF87227.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 333

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 79/204 (38%), Gaps = 19/204 (9%)

Query: 513 LRFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSAR 565
           + FE        T++ +AT  P    L +        +      +P   V+  V + S  
Sbjct: 103 MNFESGKNKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVLLMSEG 162

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            + + + + ++   +    I++ V  K+  + L + L +       +H      +R   +
Sbjct: 163 EKRKKLLEVLSNGFEPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFAL 220

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S 
Sbjct: 221 SNLKAGAKDILVATDVAGRGIDIQDVSMVINYDMAK-----NIEDYIHRIGRTGRAGKSG 275

Query: 686 VILYADTITKS-----IQLAIDET 704
           V +   T   S     ++ AI E+
Sbjct: 276 VAMTFLTKEDSAVFYDLKQAILES 299


>gi|258571293|ref|XP_002544450.1| eukaryotic initiation factor 4A-12 [Uncinocarpus reesii 1704]
 gi|237904720|gb|EEP79121.1| eukaryotic initiation factor 4A-12 [Uncinocarpus reesii 1704]
          Length = 399

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +V+SAT     L      + + +        +   GL    + +     + +   D
Sbjct: 198 ATQVVVLSATLPYDVLSMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCD 257

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 258 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 312

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 313 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 367

Query: 691 DTITK 695
            T   
Sbjct: 368 VTSED 372


>gi|190571463|ref|YP_001975821.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190357735|emb|CAQ55186.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 408

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 15/182 (8%)

Query: 521 LRPTTIVVSAT-PGSWELEQCQGIIVEQIIR------PTGLVDPPVEIRSARTQVEDVYD 573
               T++ SAT PG  E+ +     + Q  R       T  V    E+    ++ E    
Sbjct: 175 KIRQTLMFSATLPG--EIVKLTEKYLNQPERVSVDCQATTSVKIKQEVV-YASESEKYGK 231

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +    Q+   I++ V TKR A+ L + L++ +     +H +++  +R  +I   R G+ 
Sbjct: 232 LVTQLCQRKGSIIIFVKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRN 291

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   GLDIP    V   D       +S+   +  IGR AR       L   T 
Sbjct: 292 QIMVATDVASRGLDIPHIQHVINYDV-----PQSQADYVHRIGRTARAGAEGFALSFVTP 346

Query: 694 TK 695
             
Sbjct: 347 QD 348


>gi|60501853|gb|AAX22126.1| vasa [Carassius auratus]
          Length = 688

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 68/182 (37%), Gaps = 16/182 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR--------PTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT            +    I             V+  +      ++ + + D +
Sbjct: 439 QTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIIQVDQYSKRDQLLDLL 498

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R G+  V
Sbjct: 499 RSTGT--ERTMVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALSDFRTGQCPV 556

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTIT 694
           LV  ++   GLDI +   V   D        S    +  IGR  R  N  + + + +  +
Sbjct: 557 LVATSVAARGLDIEQVQHVVNFD-----LPSSIDEYVHRIGRTGRCGNIRRAVSFFNPES 611

Query: 695 KS 696
            +
Sbjct: 612 DT 613


>gi|60501851|gb|AAX22125.1| vasa-2 [Carassius auratus]
          Length = 677

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 68/182 (37%), Gaps = 16/182 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR--------PTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT            +    I             V+  +      ++ + + D +
Sbjct: 428 QTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIIQVDQYSKRDQLLDLL 487

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R G+  V
Sbjct: 488 RSTGT--ERTMVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALSDFRTGQCPV 545

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTIT 694
           LV  ++   GLDI +   V   D        S    +  IGR  R  N  + + + +  +
Sbjct: 546 LVATSVAARGLDIEQVQHVVNFD-----LPSSIDEYVHRIGRTGRCGNIRRAVSFFNPES 600

Query: 695 KS 696
            +
Sbjct: 601 DT 602


>gi|303319503|ref|XP_003069751.1| Eukaryotic translation initiation factor, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|142985565|sp|Q1DTB3|FAL1_COCIM RecName: Full=ATP-dependent RNA helicase FAL1
 gi|240109437|gb|EER27606.1| Eukaryotic translation initiation factor, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320040787|gb|EFW22720.1| ATP-dependent RNA helicase FAL1 [Coccidioides posadasii str.
           Silveira]
          Length = 399

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +V+SAT     L      + + +        +   GL    + +     + +   D
Sbjct: 198 ATQVVVLSATLPYDVLSMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCD 257

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH E+   ER  I++D R 
Sbjct: 258 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQ 312

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 313 GNSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 367

Query: 691 DTITK 695
            T   
Sbjct: 368 VTSED 372


>gi|91206541|sp|Q7SBC6|DBP2_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-2
          Length = 562

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 79/211 (37%), Gaps = 23/211 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVY--- 572
            T++ SAT            + + I    G +D          VE+ S   + + +    
Sbjct: 312 QTLMWSATWPKEVRNLAADFLTDFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIKHL 371

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I    +   +IL+   TKR+A+D+T +L +       +H + +  ER  ++   + GK
Sbjct: 372 EKIMEGRENQNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGK 431

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             ++V  ++   G+D+     V   D     +  +    I  IGR  R       +   T
Sbjct: 432 SPIMVATDVASRGIDVRNITHVLNYD-----YPNNSEDYIHRIGRTGRAGAKGTAITFFT 486

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
              S Q        R    +    K  I+P+
Sbjct: 487 TDNSKQA-------RELVGVLQEAKQQIDPR 510


>gi|87118190|ref|ZP_01074089.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121]
 gi|86165824|gb|EAQ67090.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121]
          Length = 461

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 80/199 (40%), Gaps = 12/199 (6%)

Query: 521 LRPTTIVVSAT-PGSWELEQCQGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINL 577
            +  T++ SAT P +      +     + I+   T    P ++    ++  +D    +  
Sbjct: 178 KKRQTLMFSATYPETIGKISAEFQHNPKTIKVEATQESKPDIKQFFVKSNKDDKPYALMS 237

Query: 578 AA--QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           A   Q   + ++   TK   + + ++L +  I  + +H +++  +R +++         +
Sbjct: 238 AVRYQNPEQAIVFCNTKIECQTIADFLVDHKISAKAIHGDLEQRDRDQVLVQFSNASCRI 297

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+D+ E   V   D  ++  + +       IGR  R  N  V +   T   
Sbjct: 298 LVATDVAARGIDVKEVDTVINYDTTRDIDVHT-----HRIGRTGRAGNKGVAINLVTDKD 352

Query: 696 SIQLAIDETTRRREKQLEH 714
           + +  + +   R E Q ++
Sbjct: 353 TYK--VKDIEDRFEIQADY 369


>gi|316965513|gb|EFV50216.1| ATP-dependent RNA helicase DHH1 [Trichinella spiralis]
          Length = 456

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 61/167 (36%), Gaps = 14/167 (8%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E+     + +  + +    V    ++                   Q  + ++   + +
Sbjct: 269 PYEINLMDELTLLGVTQYYAYVQEKQKVH---------CLNTLFRKLQINQSIIFCNSTQ 319

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L + + E      Y+HS +    R  +  D R+G    LV  +LL  G+DI    +
Sbjct: 320 RVELLAKKITELGYSCYYIHSRMAQAHRNRVFHDFRMGYCRNLVCSDLLTRGIDIQAVNV 379

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           V   D     F R+  + +  IGR+ R  +  + +   T    + LA
Sbjct: 380 VVNFD-----FPRNAETYLHRIGRSGRFGHLGIAINLITYEDRMTLA 421


>gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
 gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
          Length = 719

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 6/157 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TK+  E++ + L  R  +   ++ ++    R   +  LR G+ D+LV  ++   
Sbjct: 376 IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVATDVAAR 435

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+    LV   D           S +  IGR  R       IL+     K +   I++
Sbjct: 436 GLDVERISLVVNYD-----IPHDTESYVHRIGRTGRAGRDGEAILFVTPREKYMLRQIEK 490

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
            TR++ + +      ++N    +    ++ + I  ED
Sbjct: 491 ATRQKVEPMHMPTAQDVNSSRKQRFAEQITETIETED 527


>gi|126343379|ref|XP_001380649.1| PREDICTED: similar to Gu protein [Monodelphis domestica]
          Length = 902

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 96/255 (37%), Gaps = 30/255 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      +     V+ I + T      VE  +           + 
Sbjct: 522 PQTLLFSATCPHWVYDVAKKYMKSTYEQVDLIGKKTQKAAVTVEHLAINCHWSQRAAVIG 581

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLG 631
           D I + +    R ++   TK+ A++L+  L E      + +H ++   +R   ++  R G
Sbjct: 582 DVIQVYSGSHGRTIIFCETKKEAQELS--LNESIKQDAQSLHGDIPQKQREITLQGFRNG 639

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           KF VLV  N+   GLDIPE  LV      K+       S I   GR  R   + + +   
Sbjct: 640 KFGVLVATNVAARGLDIPEVDLVIQSSPPKDV-----ESYIHRSGRTGRAGRTGICICFY 694

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
              +  QLA          Q+E  ++  I  + V       I     +DA     S+   
Sbjct: 695 QKKEQHQLA----------QVE--RQAGITFKRVGVPSASEIIKASSKDAIRFLDSVPPA 742

Query: 752 QLSLSKKKGKAHLKS 766
            ++  ++  +  +  
Sbjct: 743 AINNFRQTAQKLIDE 757


>gi|149636565|ref|XP_001513702.1| PREDICTED: similar to DEAD/H box polypeptide 4 [Ornithorhynchus
           anatinus]
          Length = 526

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 72/182 (39%), Gaps = 14/182 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE------QIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
            T++ SAT    E+++  G  ++       + +  G      +      Q       I +
Sbjct: 276 QTLMFSAT-FPEEIQRLAGEFLKTEYLFVAVGQVGGACSDVQQSVLQIGQYLKREKLIEI 334

Query: 578 AAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               G  R ++ V TK+ A+ +  +L + NI    +H + +  ER + + D R GK  VL
Sbjct: 335 LRNIGQERTMVFVETKKKADFIATFLCQENISTTSIHGDREQREREQALGDFRSGKCPVL 394

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITK 695
           V  ++   GLDI +   V   D        +    +  IGR  R  N  +   + D  + 
Sbjct: 395 VATSVAARGLDIEKVQHVINFD-----LPSTIDEYVHRIGRTGRCGNIGRATSFFDPESD 449

Query: 696 SI 697
           S 
Sbjct: 450 SH 451


>gi|73969111|ref|XP_850120.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 2 [Canis
           familiaris]
          Length = 652

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 14/147 (9%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 639 INLLRE--GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            ++     GLD+ +   V   D     +  S    +  IGR AR+ N        T   +
Sbjct: 396 TDVASRGLGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-N 449

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQ 723
           ++ A      R   ++       INP+
Sbjct: 450 LKQA------RELIKVLEEANQAINPK 470


>gi|227485114|ref|ZP_03915430.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236947|gb|EEI86962.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 550

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 81/218 (37%), Gaps = 19/218 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINL--A 578
            T   SAT G    E  +      +   I+   L    ++    + +  D  + +     
Sbjct: 190 QTCFFSATMGKEISEFSKIYQKNPVTIKIKAKELTVNKIDQHFIKLKEADKEETLTRLLE 249

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             +    ++   TKR  + L E L +++  V  +H ++K  +R  +++  R    D+LV 
Sbjct: 250 INKPRLAIIFCNTKRKVDKLVESLSKKSYLVDGLHGDLKQTQRDIVMKKFRNNTIDILVA 309

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT------ 692
            ++   GLD+ +  +V   D       +     +  IGR AR   S +     +      
Sbjct: 310 TDVAARGLDVDDVDMVINYD-----LPQLDEYYVHRIGRTARAGRSGLSYSLISGRDNER 364

Query: 693 ---ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
              I K  +  I +       Q++ N +  +    +++
Sbjct: 365 LKAIEKYTKATIKQAQIPSLVQMDRNLETGVIDDIIEK 402


>gi|227501650|ref|ZP_03931699.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
 gi|306835824|ref|ZP_07468821.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
 gi|227077675|gb|EEI15638.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
 gi|304568298|gb|EFM43866.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
          Length = 623

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 74/197 (37%), Gaps = 16/197 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIR----SARTQVEDVYDE 574
           R    + SAT  +      +  +    E  ++     +  ++ R      R +++     
Sbjct: 229 RKQVALFSATMPNAIRRLSKQYLHNPAEVTVKSERRTNDNIKQRFLLIPHRAKMDAFTRI 288

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           + +       I++   TK   E++ E L +R      ++ ++   +R   +  L+ G+ D
Sbjct: 289 LEVITYD--AIIVFCRTKHETEEVAEALRDRGYSAAAINGDIAQAQRERTVDQLKDGRLD 346

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           +LV  ++   GLD+     V   D           S +  IGR  R   S   IL+    
Sbjct: 347 ILVATDVAARGLDVERITHVVNFD-----IPNDTESYVHRIGRTGRAGRSGEAILFVTPR 401

Query: 694 TKSIQLAIDE-TTRRRE 709
            + +  +I+  T  R E
Sbjct: 402 ERRMLRSIERVTNARLE 418


>gi|169883094|gb|ABZ02207.1| VASA [Trichosurus vulpecula]
          Length = 704

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++ 
Sbjct: 521 ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVA 580

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
             GLDI     V   D        +    +  IGR  R  N+ K I + D    S 
Sbjct: 581 ARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGKAISFFDPEPDSH 631


>gi|98986202|dbj|BAE94497.1| Vasa [Polyandrocarpa misakiensis]
          Length = 705

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 15/188 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR--------PTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT  +   +     + +  +             V   +       + E +   +
Sbjct: 433 HTLMFSATFPNEIQKLAHEFLRDDFLFLSVGRVGGACSDVTQTILQVDEEDKRETLMQLL 492

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +  A+   R L+ V TKR A+ L  +L + N+    +H +    ER   + D + G   +
Sbjct: 493 SDVAETRSRTLVFVETKRKADFLAAFLSQENLPTTSIHGDRYQREREMALADFKSGTCPI 552

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
           ++  ++   GLDIP+   V   D   E         +  +GR  R  N       Y+D  
Sbjct: 553 MIATSVAARGLDIPKVEHVINFDLPNE-----IDEFVHRVGRTGRCGNLGQATSFYSDNK 607

Query: 694 TKSIQLAI 701
              +  ++
Sbjct: 608 DGMLARSL 615


>gi|322374711|ref|ZP_08049225.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
           [Streptococcus sp. C300]
 gi|321280211|gb|EFX57250.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
           [Streptococcus sp. C300]
          Length = 449

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 76/200 (38%), Gaps = 16/200 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV 
Sbjct: 236 VEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R   S   I +        
Sbjct: 296 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGY 350

Query: 698 QLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
              I+  T++R K       +     K  +  + ++    +       E  A     + A
Sbjct: 351 LQIIENLTKKRMKGLKPATAEEAFQAKKQVALKKIERDFADESIRGNFEKFAKDARKLAA 410

Query: 751 QQLSLSKKKGKAHLKSLRKQ 770
           +    S ++   ++ SL  Q
Sbjct: 411 EF---SPEELAMYILSLTGQ 427


>gi|293364998|ref|ZP_06611715.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
 gi|291316448|gb|EFE56884.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
          Length = 524

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 76/200 (38%), Gaps = 16/200 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV 
Sbjct: 236 VEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R   S   I +        
Sbjct: 296 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGY 350

Query: 698 QLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
              I+  T++R K       +     K  +  + ++    +       E  A     + A
Sbjct: 351 LQIIENLTKKRMKGLKPATAEEAFQAKKQVALKKIERDFADEAIRGNFEKFAKDARKLAA 410

Query: 751 QQLSLSKKKGKAHLKSLRKQ 770
           +    S ++   ++ SL  Q
Sbjct: 411 EF---SPEELAMYILSLTVQ 427


>gi|238018738|ref|ZP_04599164.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
 gi|237865209|gb|EEP66499.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
          Length = 521

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 9/191 (4%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEI--NL 577
             T++ SAT      +  +  + E  +   +PT +    +E      Q    +D +    
Sbjct: 177 HQTLLFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLF 236

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  +++TE L +R      +H ++   +R  +IR  R G  D+LV
Sbjct: 237 DIQTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILV 296

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D  ++    S T  +   GRA +        +        
Sbjct: 297 ATDVAARGLDISGVSHVYNYDMPQD--PESYTHRVGRTGRAGKAGQ--AFTFVIPREMEH 352

Query: 698 QLAIDETTRRR 708
             AI+  T+R+
Sbjct: 353 LHAIERLTKRK 363


>gi|156089485|ref|XP_001612149.1| eukaryotic translation initiation factor 4A [Babesia bovis T2Bo]
 gi|154799403|gb|EDO08581.1| eukaryotic translation initiation factor 4A, putative [Babesia
           bovis]
          Length = 402

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 78/198 (39%), Gaps = 18/198 (9%)

Query: 516 EEWNCLRP--TTIVVSATPGSWELE------QCQGIIVEQIIRPT--GLVDPPVEIRSAR 565
           E +  + P     + SAT  +  LE      +    I+ +    T  G+    V I    
Sbjct: 194 EVFRRMPPDVQVALFSATMPNEILELTTKFMRSPKRILVKKDELTLEGIKQFYVMIDKEE 253

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            + + + D          + ++   T+R  + LT  + ER+  V  MH ++   ER  I+
Sbjct: 254 YKFDTLCDLYESVTIT--QAIIYCNTRRKVDMLTSKMQERDFTVSSMHGDMSQNERDLIM 311

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           R+ R G   VL+  +LL  G+D+ +  LV   D        S  + I  IGR+ R     
Sbjct: 312 REFRSGSTRVLITTDLLARGIDVQQVSLVINYD-----LPMSPDNYIHRIGRSGRFGRKG 366

Query: 686 V-ILYADTITKSIQLAID 702
           V I +   +       I+
Sbjct: 367 VAINFLTPMDVECMKNIE 384


>gi|110598397|ref|ZP_01386670.1| Helicase-like:DbpA, RNA-binding:DEAD/DEAH box helicase-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110340006|gb|EAT58508.1| Helicase-like:DbpA, RNA-binding:DEAD/DEAH box helicase-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 598

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 6/157 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           IL+ V TK M  +L E L  R      ++ ++   +R   +  L+ G   +++  ++   
Sbjct: 251 ILIFVRTKTMTIELAEKLQARGYGAAALNGDMAQNQRERTVDQLKNGALSIVIATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     K++  AI++
Sbjct: 311 GLDVERISHVINYD-----IPSDTESYVHRIGRTGRAGRTGDAILFVSPREKNMLYAIEK 365

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
            T  R + +E      IN + + +   ++ D I  ED
Sbjct: 366 ATHSRIELMELPSTEIINNKRIAKFNQKITDTIAAED 402


>gi|296104251|ref|YP_003614397.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058710|gb|ADF63448.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 442

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 78/195 (40%), Gaps = 20/195 (10%)

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           +    L    + VSATP + E ++          R   L            +VE +   +
Sbjct: 198 DFAERLLEDPVEVSATPSTRERKKIHQW----YYRADNL----------EHKVELLKHLL 243

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               ++  R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +V
Sbjct: 244 KQ--EEATRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMAQIKRTEGIKRLTDGRVNV 301

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT--I 693
           LV  ++   G+DIP+   V   D  + G   +    I   GRA R   +  ++ A    +
Sbjct: 302 LVATDVAARGIDIPDVSHVINFDMPRSG--DTYLHRIGRTGRAGRKGTAISLVEAHDHLL 359

Query: 694 TKSIQLAIDETTRRR 708
            + I   IDE  + R
Sbjct: 360 LQKIGRYIDEPLKSR 374


>gi|212007716|gb|ACJ22452.1| putative eukaryotic translation initiation factor 4A [Porphyra
           yezoensis]
          Length = 408

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 12/194 (6%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
           ++        + SAT     LE  Q  +   +  +++   L    ++      + ED   
Sbjct: 220 QFMPATCQVGLFSATMPDDVLEMTQKFMRDPIRILVKKDELTLEGIKQFYVAVEREDWKL 279

Query: 574 EINLAAQQGLRI---LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           E      + L I   ++   T+R  E L   + ER+  V  +H ++   +R  I+R+ R 
Sbjct: 280 ETLCDLYETLNITQSIIYTNTRRKVEWLVAKMNERDFTVSSLHGDMDQKDRDIIMREFRT 339

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VL+  +LL  G+D+ +  LV   D        +K + I  IGR+ R     V I +
Sbjct: 340 GSTRVLITTDLLARGIDVQQVSLVVNYD-----LPTNKENYIHRIGRSGRFGRKGVAINF 394

Query: 690 ADTITKSIQLAIDE 703
             +        I+E
Sbjct: 395 ITSEDARAMREIEE 408


>gi|157106196|ref|XP_001649212.1| hypothetical protein AaeL_AAEL004472 [Aedes aegypti]
 gi|108879906|gb|EAT44131.1| hypothetical protein AaeL_AAEL004472 [Aedes aegypti]
          Length = 244

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 8/133 (6%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           V+    R+ + D+   I    +   +    L+ V TK+ A+ L E+LY  N  V  +H +
Sbjct: 15  VDENDKRSHLLDLLSNIKAQNEGDEKDCLTLIFVETKKSADSLEEFLYHYNHPVTSIHGD 74

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
               ER + ++  R G+  VLV   +   GLDIP    V   D   E         +  I
Sbjct: 75  RTQKEREDALKCFRSGRCPVLVATAVAARGLDIPNVKHVINFDLPAE-----IEEYVHRI 129

Query: 676 GRAARNVNSKVIL 688
           GR  R  N  +  
Sbjct: 130 GRTGRMGNLGIAT 142


>gi|261345270|ref|ZP_05972914.1| ATP-dependent RNA helicase RhlB [Providencia rustigianii DSM 4541]
 gi|282566969|gb|EFB72504.1| ATP-dependent RNA helicase RhlB [Providencia rustigianii DSM 4541]
          Length = 428

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 118/369 (31%), Gaps = 56/369 (15%)

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE---ELKMRLIELEKEGRLLEAQRLE 423
           TG+ +  + +   +  +H        N     I     EL +++        L E   L+
Sbjct: 57  TGKTLAFLTSTFHFLLTHPAMDGKKTNQPRALIMAPTRELAVQI--YSDSKELAEYTGLK 114

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
             + Y  +  +     + ++N    L G         L +Y          + HV +  I
Sbjct: 115 MGLAYGGDGYDE--QLKVLQNGVDILVGTTGR-----LIDY--------AKQGHVDLTAI 159

Query: 484 SGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
             +   +  R   L   GF         R+PS  D   L F      R   +        
Sbjct: 160 QVVVLDEADRMYDL---GFIKDIRWIFRRMPSAADRLNLLFSATLSYRVRELAFEQMNNP 216

Query: 535 WELE-----QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
             +E     +    I E++  P+      +        ++ + +E         R ++  
Sbjct: 217 EYIEVEPLQKTGHRIKEELFYPSNEEKMRL--------LQTLLEEEWP-----ERCIIFA 263

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            TK   +D+  +L     RV  +  +V   +R+ I+     G  D+LV  ++   GL IP
Sbjct: 264 NTKHRCDDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGHIDILVATDVAARGLHIP 323

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
               V   D             +  IGR  R   S   I  A         AI+E  +  
Sbjct: 324 SVTHVFNYD-----LPDDCEDYVHRIGRTGRAGESGNSISLACEEYSLNLPAIEEYIQHS 378

Query: 709 EKQLEHNKK 717
               ++N +
Sbjct: 379 IPVSKYNSE 387


>gi|91794302|ref|YP_563953.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91716304|gb|ABE56230.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 419

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 74/200 (37%), Gaps = 11/200 (5%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
            +  T++ SAT         + ++ E ++I          +I      V++      L  
Sbjct: 188 KQRQTLLFSATLNDSIFSFSKNLLNEPKVIEVAKANTKVAKIEERVYCVDEERKLSLLCH 247

Query: 579 ---AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               ++  ++L+   TK+ A++L   + +  I     H ++    R  +++D    K  V
Sbjct: 248 LLSKERWQQVLVFSRTKQGADNLACQMQKSGIEALAFHGDLSQSVRESVLKDFSQAKVQV 307

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI +   V   +             I  IGR  R     + +    I  
Sbjct: 308 LVATDVAARGLDIEDLNYVVNYE-----LPHVSEDYIHRIGRTGRAGKDGIAVTLFAIED 362

Query: 696 SIQLAIDET-TRRREKQLEH 714
           + +L   ET   RR  Q  +
Sbjct: 363 TAKLMSLETLLDRRLPQQWY 382


>gi|309776780|ref|ZP_07671754.1| ATP-dependent RNA helicase RhlE [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915528|gb|EFP61294.1| ATP-dependent RNA helicase RhlE [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 438

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 83/265 (31%), Gaps = 36/265 (13%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            +  T+  SAT    E+      +++  I         +E+  A T VE +   +    +
Sbjct: 174 KKKQTLFFSAT-MPKEIRALAESLLKNPIS--------IEVTPAATTVEKIDQTLYYVDK 224

Query: 581 QG--------------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
                              L+   TK  A  L +YL E  +    +H       R + + 
Sbjct: 225 ANKKRLLLKLLNKNRVQNALVFTRTKSNANRLAKYLNEAGVAAGVIHGNKSQNARQQALL 284

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK- 685
             + GK  VLV  ++   G+D+ E   V   D   E         +  IGR  R      
Sbjct: 285 QFKEGKSRVLVATDIAARGIDVQELSHVFNYDIPNE-----AEVYVHRIGRTGRAGRQGT 339

Query: 686 VILYADTITKSIQLAIDETTR-RREKQLEHN------KKHNINPQSVKEKIMEVIDPILL 738
            I ++D        +I++  R R   Q +        +     PQ  K K          
Sbjct: 340 AIAFSDINEAEYIKSIEKLIRMRIPVQEDREFPMRNMEVSAPTPQQHKRKRSTPSKSASN 399

Query: 739 EDAATTNISIDAQQLSLSKKKGKAH 763
            +      S  A Q   +    + H
Sbjct: 400 GNEKRRAASAKASQKPAAPAGKQNH 424


>gi|269798436|ref|YP_003312336.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
 gi|269095065|gb|ACZ25056.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
           2008]
          Length = 515

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 9/191 (4%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEI--NL 577
             T++ SAT      +  +  + E  +   +PT +    +E      Q    +D +    
Sbjct: 177 HQTLLFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLF 236

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  +++TE L +R      +H ++   +R  +IR  R G  D+LV
Sbjct: 237 DIQTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILV 296

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D  ++    S T  +   GRA +        +        
Sbjct: 297 ATDVAARGLDISGVSHVYNYDMPQD--PESYTHRVGRTGRAGKAGQ--AFTFVIPREMEH 352

Query: 698 QLAIDETTRRR 708
             AI+  T+R+
Sbjct: 353 LHAIERLTKRK 363


>gi|67970455|dbj|BAE01570.1| unnamed protein product [Macaca fascicularis]
          Length = 437

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 163 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 216

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 217 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 275

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 276 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 330

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 331 YVHRIGRTGRSGNTGIATTF------INKACDES 358


>gi|297738935|emb|CBI28180.3| unnamed protein product [Vitis vinifera]
          Length = 916

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 74/196 (37%), Gaps = 20/196 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVE-IRSARTQ---VE 569
              T++ SAT    E+++     +   I          T L+   VE +     +   ++
Sbjct: 606 ARQTMLFSAT-FPNEIQRLAADFLSNYIFLSVGRVGSSTDLIVQRVEFVEDTDKRYHLMD 664

Query: 570 DVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            +  ++     +     L+ V TKR  + L ++L    +    +H +   +ER   ++  
Sbjct: 665 LLQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERERALKSF 724

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           + G   ++V  ++   GLDIP    V   D  K     +    +  IGR  R   S    
Sbjct: 725 KSGATPIMVATDVAARGLDIPHVAHVINFDLPK-----AIDDYVHRIGRTGRAGKSGLAT 779

Query: 688 LYADTITKSIQLAIDE 703
            + +    S+  ++ E
Sbjct: 780 AFFNDGNLSLAKSLVE 795


>gi|52545677|emb|CAH10627.2| hypothetical protein [Homo sapiens]
          Length = 652

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 14/147 (9%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 639 INLLRE--GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            ++     GLD+ +   V   D     +  S    +  IGR AR+ N        T   +
Sbjct: 396 TDVASRGLGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-N 449

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQ 723
           ++ A      R   ++       INP+
Sbjct: 450 LKQA------RELIKVLEEANQAINPK 470


>gi|71024093|ref|XP_762276.1| hypothetical protein UM06129.1 [Ustilago maydis 521]
 gi|74699014|sp|Q4P184|FAL1_USTMA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|46101778|gb|EAK87011.1| hypothetical protein UM06129.1 [Ustilago maydis 521]
          Length = 397

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 76/184 (41%), Gaps = 21/184 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              +++SAT     LE     + + +        +   G+    V +     + +   D+
Sbjct: 198 TQVVLLSATLPQDVLEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL 257

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   T+R  + L+  + E N +V  MH E++  ER E++ + R G
Sbjct: 258 YDTLTIT-----QAVIFCNTRRKVDWLSAKMKENNFQVSSMHGEMQQKERDEVMAEFRQG 312

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
              VL+  ++   G+DI    LV   D        ++ + I  IGR+ R     V +   
Sbjct: 313 SSRVLITTDVWARGIDIANISLVINYD-----LPTNRENYIHRIGRSGRFGRKGVAINFV 367

Query: 692 TITK 695
           T+  
Sbjct: 368 TVDD 371


>gi|320158915|ref|YP_004191293.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O]
 gi|319934227|gb|ADV89090.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O]
          Length = 509

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 73/199 (36%), Gaps = 20/199 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT      E  +G++   +E  + P       VE  I  A   V+     + 
Sbjct: 178 KRQNLLFSATFSDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYPAD--VKKKPAMLA 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                G   ++L+   TK  A  L  +L ++ +    +H       R + + D + G+  
Sbjct: 236 KLINDGDWRQVLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGEVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTI 693
           VLV  ++   G+DIP+   V   +  K          +  IGR  R   + K I     +
Sbjct: 296 VLVATDIAARGIDIPQLPQVVNFELPKV-----AEDYVHRIGRTGRAGETGKAISLVCAL 350

Query: 694 TKSIQLAIDETTRRREKQL 712
                 AI+     R  Q 
Sbjct: 351 EAPELFAIE-----RLIQE 364


>gi|312221692|emb|CBY01632.1| hypothetical protein [Leptosphaeria maculans]
          Length = 308

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +VVSAT     LE     + + +        +   GL    + I     + +   D
Sbjct: 79  ATQVVVVSATLPYDVLEMTTKFMTDPVRILVKRDELTLEGLKQYFIAIEKEEWKFDTLCD 138

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LT+ + E N  V  MH ++   ER  I++D R 
Sbjct: 139 LYDTLTIT-----QAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQRERDSIMQDFRQ 193

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
               VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 194 ANSRVLISTDVWARGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF 248

Query: 691 DTITK 695
            T   
Sbjct: 249 VTQED 253


>gi|302416733|ref|XP_003006198.1| ATP-dependent RNA helicase ded1 [Verticillium albo-atrum VaMs.102]
 gi|261355614|gb|EEY18042.1| ATP-dependent RNA helicase ded1 [Verticillium albo-atrum VaMs.102]
          Length = 676

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ L+++L  ++     +H +    ER   +   R G+  +LV   +   
Sbjct: 443 TLIFVETKRMADSLSDFLINQSFPATSIHGDRTQRERERALEFFRNGRCPILVATAVAAR 502

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           GLDIP    V   D             +  IGR  R  N+ 
Sbjct: 503 GLDIPNVTHVVNYD-----LPTDIDDYVHRIGRTGRAGNTG 538


>gi|260545280|ref|ZP_05821021.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260754789|ref|ZP_05867137.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260758012|ref|ZP_05870360.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260761835|ref|ZP_05874178.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883806|ref|ZP_05895420.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|261214040|ref|ZP_05928321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|260096687|gb|EEW80562.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260668330|gb|EEX55270.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260672267|gb|EEX59088.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260674897|gb|EEX61718.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260873334|gb|EEX80403.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|260915647|gb|EEX82508.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
          Length = 458

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 159 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 208

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 209 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 268

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 269 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 328

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 329 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 378


>gi|85859652|ref|YP_461854.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
 gi|85722743|gb|ABC77686.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
          Length = 413

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 77/199 (38%), Gaps = 13/199 (6%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR----TQVEDVYDEIN 576
            +  T+  SAT      +     +    IR     + PV           +++D    + 
Sbjct: 178 KKHQTLFFSATINPEIKKLAFSQVKGTAIRIQISPEDPVSANVTHAVMFVEMDDKRFFLE 237

Query: 577 LAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++    ++++ V T+  AE +   +    +    +H E    ER  ++R  + G+ +
Sbjct: 238 RFLKENQESKVIVFVRTRIRAERVARAMERVGLHSLTIHGEKDQAERTSVMRKFKEGECN 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+  ++   G+DIP+   V   D           + +  +GR  R  N  + L   +  
Sbjct: 298 LLIATDVSARGIDIPDVNYVINYD-----LPEKAENYVHRVGRTGRGDNKGIALSFCSSD 352

Query: 695 KSIQLAIDETTRRREKQLE 713
           + ++  + E  +   K++E
Sbjct: 353 EKMR--LQEIQQFLNKEIE 369


>gi|65306809|gb|AAY41942.1| vasa-like protein [Anopheles gambiae]
          Length = 596

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 91/264 (34%), Gaps = 49/264 (18%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS---CMDNRPL 513
            P  L ++        +D  +VT   ++ +   +  R     + GF LPS    M +  +
Sbjct: 306 TPGRLLDF--------IDRGYVTFENVNFVVLDEADRM---LDMGF-LPSIEKVMGHATM 353

Query: 514 RFEEWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
                   +  T++ SAT P   E+++  G  +   I         V +        DV 
Sbjct: 354 P----EKQQRQTLMFSATFPA--EIQELAGKFLHNYI--------CVFVGIVGGACADVE 399

Query: 573 DEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
             I+L  +   R               L+ V TKR A+ L   + E       +H +   
Sbjct: 400 QTIHLVEKFKKRKKLEEILNGGNPKGTLVFVETKRNADYLASLMSETQFPTTSIHGDRLQ 459

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER   + D + G+ DVL+  ++   GLDI     V   D  K     S    +  IGR 
Sbjct: 460 REREMALYDFKSGRMDVLIATSVAARGLDIKNVNHVVNYDLPK-----SIDDYVHRIGRT 514

Query: 679 ARNVNSKVILYADTITKSIQLAID 702
            R  N               +A D
Sbjct: 515 GRVGNKGRATSFYDPEADRAMASD 538


>gi|319411699|emb|CBQ73743.1| probable ATP-dependent RNA helicase DHH1 [Sporisorium reilianum]
          Length = 491

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 92/249 (36%), Gaps = 33/249 (13%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E+     + +  + +    V+   ++           + +    Q    I +   +  
Sbjct: 238 PYEINLMDELTLRGVTQYYAFVEERQKVH--------CLNTLFSKLQINQSI-IFCNSTN 288

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L + + E      Y H+++    R  +  D R G    LV  +LL  G+DI    +
Sbjct: 289 RVELLAKKITELGYSCFYSHAKMLQAHRNRVFHDFRNGACRNLVCSDLLTRGIDIQAVNV 348

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           V   D     F ++  + +  IGR+ R  +  + +   T      L   E     E Q  
Sbjct: 349 VINFD-----FPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIQ-- 401

Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
                   P ++ +++   + P L+++A   N + + Q       +G+  +   ++ MH 
Sbjct: 402 ------PIPSNIDKRLY--VAPSLIQEAEGKNQNGNMQ-------EGRPVIPPGQQAMHA 446

Query: 774 AA--DNLNF 780
           AA   N NF
Sbjct: 447 AAIPQNQNF 455


>gi|261218608|ref|ZP_05932889.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261321895|ref|ZP_05961092.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|260923697|gb|EEX90265.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261294585|gb|EEX98081.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
          Length = 462

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 159 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 208

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 209 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 268

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 269 GADTVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 328

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 329 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 378


>gi|258597823|ref|XP_001348611.2| helicase, putative [Plasmodium falciparum 3D7]
 gi|255528866|gb|AAN37050.2| helicase, putative [Plasmodium falciparum 3D7]
          Length = 527

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 78/211 (36%), Gaps = 24/211 (11%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIR--- 550
            + + GF L           +  + +RP   T++ SAT         + +  EQ I+   
Sbjct: 271 KMLDMGFELQ--------IRKIVDQIRPDRQTLMWSATWPKEVQALAKDLCKEQPIQVNV 322

Query: 551 ------PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
                     +   + +     ++ ++   +    +   RI++ V TK+ A+ +T+ L  
Sbjct: 323 GSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDNDRIIVFVETKKNADFITKALRL 382

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
             +    +H + K  ER  ++ + + GK  +++  ++   GLDI     V   D     F
Sbjct: 383 DGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVINFD-----F 437

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITK 695
                  +  IGR  R  +        T  K
Sbjct: 438 PNQIEDYVHRIGRTGRAGSHGASFTFLTADK 468


>gi|187921780|ref|YP_001890812.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phytofirmans PsJN]
 gi|187720218|gb|ACD21441.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 479

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 82/244 (33%), Gaps = 17/244 (6%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLA 578
            T++ SAT          GI+   V   + P       ++  +     + +       +A
Sbjct: 181 QTLLFSATFTDDIRTMAAGILRGPVNISVSPPNATASRIKQWVVPVDKKNKPDLFMHLVA 240

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                  L+ V T+   + L   L +    V  +H +     R+  +   + G+  +LV 
Sbjct: 241 ENNWEHALVFVKTRNGVDYLAAILDKAGYSVDTIHGDKPQPARLRALERFKTGEVSMLVA 300

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   GLDI    LV  +D             +  IGR  R   S V +          
Sbjct: 301 TDVAARGLDIDNLPLVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADEAPQ 355

Query: 698 QLAIDETTR---RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
             AI+   R   RRE++     +H   PQ+      ++I             +      +
Sbjct: 356 LAAIEALIRQTLRREEEPGFEAEHR-VPQT--SATGQIIKKPKKPKKPKVPQAAPGAVQA 412

Query: 755 LSKK 758
           LSKK
Sbjct: 413 LSKK 416


>gi|332821351|ref|XP_003310755.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 3 [Pan
           troglodytes]
          Length = 704

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 520 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 579

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 580 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 631


>gi|332821349|ref|XP_003310754.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 2 [Pan
           troglodytes]
          Length = 575

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 391 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 450

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 451 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 502


>gi|332821347|ref|XP_003310753.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 1 [Pan
           troglodytes]
          Length = 690

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 506 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 565

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 566 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 617


>gi|310641357|ref|YP_003946115.1| dead/deah box helicase domain-containing protein [Paenibacillus
           polymyxa SC2]
 gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
           polymyxa SC2]
          Length = 525

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 99/271 (36%), Gaps = 30/271 (11%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPTGLVDPP------VEIRSARTQVEDVYDEI 575
            T++ SAT  P    L +      E +      V  P      +E+   R + E +   I
Sbjct: 177 QTMLFSATMPPNIKRLAEQFLKDPEHVSVIPKQVSAPLIDQAYIEV-PERQKFEALSRLI 235

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++  +     ++   TKR  ++L E L +R      +H ++   +R  ++R  R G  DV
Sbjct: 236 DM--ESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDV 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLD+     V   D       +   S +  IGR  R         +     
Sbjct: 294 LVATDVAARGLDVSGVTHVVNFD-----LPQDPESYVHRIGRTGRAGKEGEAWSFVTPRE 348

Query: 695 KSIQLAIDETTRRR-------EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
                 I+  TR R               K  I    + E+++EV++   L +     I 
Sbjct: 349 IDHLHFIERVTRHRIPRKPLPTLAEALEGKQRI----IAERLLEVVEKGELNEYKGLAIQ 404

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           +  Q  S+  +   A LK +  +   A+  L
Sbjct: 405 MLEQYDSV--QLLSAALKLMTGEKREASIEL 433


>gi|262231852|ref|NP_001160005.1| probable ATP-dependent RNA helicase DDX4 isoform 3 [Homo sapiens]
          Length = 704

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 520 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 579

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 580 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 631


>gi|262118318|ref|NP_001160006.1| probable ATP-dependent RNA helicase DDX4 isoform 4 [Homo sapiens]
          Length = 575

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 391 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 450

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 451 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 502


>gi|238008396|gb|ACR35233.1| unknown [Zea mays]
          Length = 618

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 92/262 (35%), Gaps = 32/262 (12%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      D+    F+ +   R  T++ SAT         +  +V+ +    G  
Sbjct: 340 RLVDLGFE-----DDIKEVFDHFKDQR-QTLLFSATMPQKIQNFAKNALVKPVTVNVGRA 393

Query: 555 ----VDPPVEIRSARTQVED--VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
               +D   E+   +   ED  +   +    +    +L+    K   + + EYL  + + 
Sbjct: 394 GAANLDVIQEVEYVK---EDARIIYLLECLQKTPPPVLIFCENKADVDYIHEYLLLKGVE 450

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H      ER   I   + G+ DVLV  ++  +GLD P+   V   D   E      
Sbjct: 451 AVAIHGGKDQEERQNAIDSFKTGRKDVLVATDVASKGLDFPDIQHVINYDMPAE-----I 505

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            + +  IGR  R   + +        ++    +D       K L    K  I P      
Sbjct: 506 ENYVHRIGRTGRCGKTGIATTFINKNQTETTLLD------LKHLLKEAKQRIPPV----- 554

Query: 729 IMEVIDPILLEDAATTNISIDA 750
           + E+ DP+  E+       +  
Sbjct: 555 LAELNDPLDDEEIIAKESGVKG 576


>gi|216548263|ref|NP_001136021.1| probable ATP-dependent RNA helicase DDX4 isoform 2 [Homo sapiens]
          Length = 690

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 506 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 565

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 566 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 617


>gi|193787510|dbj|BAG52716.1| unnamed protein product [Homo sapiens]
          Length = 575

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 391 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 450

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 451 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 502


>gi|6808044|emb|CAB70750.1| hypothetical protein [Homo sapiens]
          Length = 635

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 451 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 510

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 511 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 562


>gi|332821345|ref|XP_517757.3| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 4 [Pan
           troglodytes]
          Length = 724

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 540 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 599

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 600 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 651


>gi|28958131|gb|AAH47455.1| DDX4 protein [Homo sapiens]
          Length = 690

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 506 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 565

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 566 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 617


>gi|50054446|ref|NP_001001910.1| probable ATP-dependent RNA helicase DDX4 [Sus scrofa]
 gi|51315697|sp|Q6GWX0|DDX4_PIG RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog;
           AltName: Full=Vasa-like protein
 gi|48727699|gb|AAT46129.1| VASA-like protein [Sus scrofa]
          Length = 722

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 538 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 597

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 598 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 649


>gi|13518015|ref|NP_077726.1| probable ATP-dependent RNA helicase DDX4 isoform 1 [Homo sapiens]
 gi|20138033|sp|Q9NQI0|DDX4_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog
 gi|8102021|gb|AAF72705.1| VASA protein [Homo sapiens]
 gi|56789238|gb|AAH88362.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Homo sapiens]
 gi|119575324|gb|EAW54929.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Homo sapiens]
 gi|158258266|dbj|BAF85106.1| unnamed protein product [Homo sapiens]
          Length = 724

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 540 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 599

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 600 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 651


>gi|289705155|ref|ZP_06501559.1| ATP-dependent RNA helicase DeaD family protein [Micrococcus luteus
           SK58]
 gi|289558183|gb|EFD51470.1| ATP-dependent RNA helicase DeaD family protein [Micrococcus luteus
           SK58]
          Length = 470

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 15/176 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------EDVY 572
              T++ SAT PG       + +     IR     D  +  +  R  V        +++ 
Sbjct: 223 VRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMDKDELV 282

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                A  +G R ++   TKR A  + + L  R      +H ++    R + +R  R GK
Sbjct: 283 ARALQAEGRG-RTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAFRNGK 341

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            D+LV  ++   G+D+ +   V    A        + + +  +GR  R  N  V +
Sbjct: 342 VDILVATDVAARGIDVDDVTHVFNFQA-----PEDEKTYVHRVGRTGRAGNKGVAV 392


>gi|56090019|gb|AAV70960.1| Vasa [Carassius gibelio]
          Length = 701

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 68/182 (37%), Gaps = 16/182 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR--------PTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT            +    I             V+  +      ++ + + D +
Sbjct: 452 QTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIIQVDQYSKRDQLLDLL 511

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R G+  V
Sbjct: 512 RSTGT--ERTMVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALSDFRTGQCPV 569

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTIT 694
           LV  ++   GLDI +   V   D        S    +  IGR  R  N  + + + +  +
Sbjct: 570 LVATSVAARGLDIEQVQHVVNFD-----LPSSIDEYVHRIGRTGRCGNIGRAVSFFNPES 624

Query: 695 KS 696
            +
Sbjct: 625 DT 626


>gi|71409597|ref|XP_807135.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
 gi|70871069|gb|EAN85284.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
          Length = 633

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 87/247 (35%), Gaps = 23/247 (9%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIR--PTGLVDPPVEIRSARTQVE------DVYDE 574
             T++ SAT   W          ++ I     G +     I+  R +         + D 
Sbjct: 240 HQTLLFSATVPEWVHTCSFIPRNKEFIDMVGQGTMRAANTIKFYRRKCHFSEVSCMLADL 299

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           + + + +  R L+   TK+   DL+  +    +  + +H +++  +R   ++  R  KF 
Sbjct: 300 VKVYSGRHGRTLVFTNTKKECHDLS--INNTKLDSQCLHGDMQQEQRESTMKSFRDNKFS 357

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VL+  ++   GLD+P   LV               + I   GR  R     V +      
Sbjct: 358 VLIATDVAARGLDLPMVDLVIQCAP-----PTDIDAFIHRAGRTGRAGRKGVCVLLHQPK 412

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
                 ++   R  + + E      + P   +++I+  +     ED A    S     + 
Sbjct: 413 DEYI--VERIERHAKIKFE------VLPAPTRDEILRAVARDAAEDLARVERSATNLFME 464

Query: 755 LSKKKGK 761
            + +  K
Sbjct: 465 QAAELLK 471


>gi|294794656|ref|ZP_06759792.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
 gi|294454986|gb|EFG23359.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
          Length = 515

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 9/191 (4%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEI--NL 577
             T++ SAT      +  +  + E  +   +PT +    +E      Q    +D +    
Sbjct: 177 HQTLLFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLF 236

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  +++TE L +R      +H ++   +R  +IR  R G  D+LV
Sbjct: 237 DIQTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILV 296

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D  ++    S T  +   GRA +        +        
Sbjct: 297 ATDVAARGLDISGVSHVYNYDMPQD--PESYTHRVGRTGRAGKAGQ--AFTFVIPREMEH 352

Query: 698 QLAIDETTRRR 708
             AI+  T+R+
Sbjct: 353 LHAIERLTKRK 363


>gi|282849975|ref|ZP_06259358.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
 gi|294792894|ref|ZP_06758041.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
 gi|282580412|gb|EFB85812.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
 gi|294456793|gb|EFG25156.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
          Length = 515

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 9/191 (4%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEI--NL 577
             T++ SAT      +  +  + E  +   +PT +    +E      Q    +D +    
Sbjct: 177 HQTLLFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLF 236

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  +++TE L +R      +H ++   +R  +IR  R G  D+LV
Sbjct: 237 DIQTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILV 296

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D  ++    S T  +   GRA +        +        
Sbjct: 297 ATDVAARGLDISGVSHVYNYDMPQD--PESYTHRVGRTGRAGKAGQ--AFTFVIPREMEH 352

Query: 698 QLAIDETTRRR 708
             AI+  T+R+
Sbjct: 353 LHAIERLTKRK 363


>gi|262381389|ref|ZP_06074527.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
 gi|262296566|gb|EEY84496.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
          Length = 408

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 29/194 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       E I++   +   P +++  +     
Sbjct: 165 QTIMFSATMPPKIRTLAKTILKDPEEVKIAISRPPESIMQTAYICYDPQKLKILQD---- 220

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                     +  R+++   +K   ++L   L      V  MHS+++  +R E++++ + 
Sbjct: 221 -----LFTQSRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKS 275

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVIL 688
           G  D+LV  +++  G+DI +  LV   D             +  IGR AR  N     I 
Sbjct: 276 GHIDILVATDVVARGIDINDIKLVVNFD-----IPHDPEDYVHRIGRTARGTNGEGLAIT 330

Query: 689 YADTITKSIQLAID 702
           +     ++    I+
Sbjct: 331 FVSIDEQAQFKRIE 344


>gi|209809235|ref|YP_002264773.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
           [Aliivibrio salmonicida LFI1238]
 gi|208010797|emb|CAQ81193.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
           [Aliivibrio salmonicida LFI1238]
          Length = 641

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV  +++  G
Sbjct: 249 IVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVVARG 308

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDET 704
           LD+P    V   D   +       S I  IGR  R     K IL   T    +   I+  
Sbjct: 309 LDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERV 363

Query: 705 TRRREKQLE 713
           T+    ++E
Sbjct: 364 TKSSMVEIE 372


>gi|296475821|gb|DAA17936.1| probable ATP-dependent RNA helicase DDX4 [Bos taurus]
          Length = 729

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 542 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 601

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
              GLDI     V   D        +    +  IGR  R  N+   I + D  + S
Sbjct: 602 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDS 652


>gi|295702421|ref|YP_003595496.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294800080|gb|ADF37146.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 503

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 93/247 (37%), Gaps = 19/247 (7%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P +       Q +  +D +    
Sbjct: 176 HQTLLFSATMPTPIRRIAEKFMNEPKVVKVQAKEVTMPNITQYYLEVQEKRKFDILTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R    + +H ++   +R+ ++R  + G  DVLV
Sbjct: 236 DMQSPELAIIFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R       +   T  ++ 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKMGAAMTFVTPRETG 350

Query: 698 Q-LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
           Q   I+ TT+R+   +E      + P ++ E +         +   +      +    L+
Sbjct: 351 QLHNIERTTKRK---MER-----LTPPTLDEAMEGQQRIAADKLTESVTQGNLSYYKQLA 402

Query: 757 KKKGKAH 763
           ++  + H
Sbjct: 403 EELLEEH 409


>gi|254472453|ref|ZP_05085853.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp.
           JE062]
 gi|211958736|gb|EEA93936.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp.
           JE062]
          Length = 453

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 15/189 (7%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL--- 577
            +  T+  SAT      +  +  +   +   T      VE      Q+  +  +      
Sbjct: 179 KKRQTLFFSATMPREIRDLSERFLTNPVEVSTAPPATTVET--VTQQIAHLEKDAKFPLL 236

Query: 578 ----AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                  +  R L+  LTK+ +  L   L    +    +H ++   ER + +   + GK 
Sbjct: 237 KELLEKDECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKL 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
             LV  ++   G+D+ +   V   D        +  + +  IGR AR   S   I +   
Sbjct: 297 KTLVATDVAARGIDVSDISHVINFD-----MPNATENYVHRIGRTARAGKSGTAITFCLP 351

Query: 693 ITKSIQLAI 701
             + +  AI
Sbjct: 352 EDRGMLRAI 360


>gi|50419477|ref|XP_458265.1| DEHA2C13486p [Debaryomyces hansenii CBS767]
 gi|74659403|sp|Q6BU54|DED1_DEBHA RecName: Full=ATP-dependent RNA helicase DED1
 gi|49653931|emb|CAG86342.1| DEHA2C13486p [Debaryomyces hansenii]
          Length = 630

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TKRMA++L ++LY++      +H +    ER + +   + G   +LV   +   
Sbjct: 416 TIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKTGTAPILVATAVAAR 475

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GLDIP    +   D             +  IGR  R  N  +  
Sbjct: 476 GLDIPNVSHIVNYD-----LPSDIDDYVHRIGRTGRAGNIGIAT 514


>gi|56119116|ref|NP_001007820.1| probable ATP-dependent RNA helicase DDX4 [Bos taurus]
 gi|75071078|sp|Q5W5U4|DDX4_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4
 gi|33332326|gb|AAQ11373.1| DEAD/H box polypeptide 4 [Bos taurus]
          Length = 729

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 542 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 601

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
              GLDI     V   D        +    +  IGR  R  N+   I + D  + S
Sbjct: 602 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDS 652


>gi|58336606|ref|YP_193191.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           NCFM]
 gi|227903163|ref|ZP_04020968.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus acidophilus
           ATCC 4796]
 gi|58253923|gb|AAV42160.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           NCFM]
 gi|227869149|gb|EEJ76570.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus acidophilus
           ATCC 4796]
          Length = 495

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 119/330 (36%), Gaps = 42/330 (12%)

Query: 390 PTLNTAMKYI----KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENY 445
                A++ I      EL ++  E  +  RL   +R   ++ Y    +      + I + 
Sbjct: 64  DKKEKAIQAIIIEPTRELAIQTQE--ELFRLGRDERAHVQVVYGGADI-----GRQIRSL 116

Query: 446 SRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP 505
             ++     G  P  L +++ +   + +D+    +                + + GF   
Sbjct: 117 KHHVPSILVG-TPGRLLDHL-KRGTIDLDKVKTVV----------LDEADEMLDMGFI-- 162

Query: 506 SCMDNRPLRFEEWNCLRPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE-- 560
                  L++      R  T++ SAT   P     E+         I+   L    ++  
Sbjct: 163 -QDIESILKYA---KNRNQTLLFSATMPKPILRIGEKFMNNPEIVQIKAKELTADLIDQY 218

Query: 561 -IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            +R+  ++  D+   +       L  ++   TKR  ++LT  L  R      +H ++   
Sbjct: 219 FVRAKESEKFDIMCRLIDVQGPDL-AVVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQA 277

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            R+ +++  R GK D+LV  ++   GLDI     V   D       +   S +  IGR  
Sbjct: 278 RRMAVLKRFREGKLDILVATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRTG 332

Query: 680 RNVNSKV-ILYADTITKSIQLAIDETTRRR 708
           R   + + + +           I++ T+++
Sbjct: 333 RAGQNGISVTFVTPNEIGYMRTIEQLTKKK 362


>gi|323499260|ref|ZP_08104237.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
 gi|323315648|gb|EGA68682.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
          Length = 646

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQLRM 356

Query: 698 QLAIDETTR 706
              I+  T+
Sbjct: 357 LRTIERVTK 365


>gi|239831927|ref|ZP_04680256.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239824194|gb|EEQ95762.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 470

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 80/235 (34%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 167 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHSERQTALFSAT-MPKEIAS 216

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
             G ++   +R    P G     +   +    T+ +       L  +    +++   TK 
Sbjct: 217 LAGSLLRDPVRVEVAPQGTTAAEITQVVHPVHTKEKRRLLSALLGDKAMRSVIVFTRTKH 276

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +L+  ++   G+D+P    
Sbjct: 277 GADAVVRHLERDGYEVAAIHGNKSQNARQRALNGFRDGSLRILIATDIAARGIDVPGISH 336

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 337 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPAAEESKLRAVERVTR 386


>gi|213402959|ref|XP_002172252.1| ATP-dependent RNA helicase rok1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000299|gb|EEB05959.1| ATP-dependent RNA helicase rok1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 519

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 5/113 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++ V     A+ L   L    I V  +H E+  ++R E++   R G+  VL+  +LL 
Sbjct: 321 RVVIFVQDIDRAKALYTELMFDGIHVAAIHGELPQMKRDEVMARFRKGEVWVLIATDLLA 380

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            G+D     LV   D     F +S  S I  IGR  R  +    +   T   S
Sbjct: 381 RGIDFNGVKLVINYD-----FPQSVHSYIHRIGRTGRAGHGGRAITFYTKEDS 428


>gi|226502378|ref|NP_001147853.1| ATP-dependent RNA helicase DDX41 [Zea mays]
 gi|195614138|gb|ACG28899.1| ATP-dependent RNA helicase DDX41 [Zea mays]
          Length = 616

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 92/262 (35%), Gaps = 32/262 (12%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      D+    F+ +   R  T++ SAT         +  +V+ +    G  
Sbjct: 338 RLVDLGFE-----DDIKEVFDHFKDQR-QTLLFSATMPQKIQNFAKNALVKPVTVNVGRA 391

Query: 555 ----VDPPVEIRSARTQVED--VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
               +D   E+   +   ED  +   +    +    +L+    K   + + EYL  + + 
Sbjct: 392 GAANLDVIQEVEYVK---EDARIIYLLECLQKTPPPVLIFCENKADVDYIHEYLLLKGVE 448

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H      ER   I   + G+ DVLV  ++  +GLD P+   V   D   E      
Sbjct: 449 AVAIHGGKDQEERQNAIDSFKTGRKDVLVATDVASKGLDFPDIQHVINYDMPAE-----I 503

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            + +  IGR  R   + +        ++    +D       K L    K  I P      
Sbjct: 504 ENYVHRIGRTGRCGKTGIATTFINKNQTETTLLD------LKHLLKEAKQRIPPV----- 552

Query: 729 IMEVIDPILLEDAATTNISIDA 750
           + E+ DP+  E+       +  
Sbjct: 553 LAELNDPLDDEEIIAKESGVKG 574


>gi|90580587|ref|ZP_01236392.1| putative ATP-dependent RNA helicase SrmB [Vibrio angustum S14]
 gi|90438245|gb|EAS63431.1| putative ATP-dependent RNA helicase SrmB [Photobacterium angustum
           S14]
          Length = 416

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 83/219 (37%), Gaps = 35/219 (15%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI--------RSARTQVEDVYD 573
           R  +++ SAT     LE        + I     ++ PVE+        R    Q+    D
Sbjct: 179 RRQSLLFSAT-----LEGKGVREFSETI-----LNEPVEVNADPSRRERKKIHQMYLRCD 228

Query: 574 EINLA--------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            ++           +Q  R ++ V T+     L   L    I   ++  E+    R  +I
Sbjct: 229 NMDHKLALLENIIKEQAERTIIFVKTRERLGILRGQLEAMGIPCNWIQGEMAQAARTNMI 288

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R G  +VL+  ++   G+D+P+   V   D       R+    +  IGR AR     
Sbjct: 289 TRFRDGVVNVLIATDVAARGIDLPDVSHVINFD-----LPRTAEVYVHRIGRTARAGKKG 343

Query: 686 -VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
             I   +   +S+   I+  +R  +++++    H + PQ
Sbjct: 344 TAISLVEAHDQSM---IERISRYMKEEVQERFIHGLRPQ 379


>gi|116671594|ref|YP_832527.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp.
           FB24]
 gi|116611703|gb|ABK04427.1| ATP-dependent RNA helicase CsdA [Arthrobacter sp. FB24]
          Length = 747

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 8/184 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ++  V TK   EDL + L  R  +   ++ ++   +R   +  L+ G+ D+LV  ++   
Sbjct: 338 VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAAR 397

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     K +  +I++
Sbjct: 398 GLDVERISHVVNYD-----IPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRSIEK 452

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN--ISIDAQQLSLSKKKGK 761
            TR+  +Q+       +N   + +    + + +  ED A     IS   ++ ++   +  
Sbjct: 453 ATRQPVEQMHLPTAETVNTLRLGKFAERITETLASEDVAPFRDLISSYEEEHNVPASEIA 512

Query: 762 AHLK 765
           A L 
Sbjct: 513 AALA 516


>gi|163848628|ref|YP_001636672.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526563|ref|YP_002571034.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163669917|gb|ABY36283.1| DEAD/DEAH box helicase domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450442|gb|ACM54708.1| DEAD/DEAH box helicase domain protein [Chloroflexus sp. Y-400-fl]
          Length = 552

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 91/246 (36%), Gaps = 37/246 (15%)

Query: 470 LLFVDESHVTIPQISGMYRGDF------HRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP 523
           ++ +DE+   +                  R+  L  +   LP  + N  LR+        
Sbjct: 146 MVVLDEADEMLDMGFAEELEAILQLTPTERQTAL--FSATLPPAVQNLTLRYTR------ 197

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             + VS             I  EQ+  P  +     E+  AR +++ +   ++  A+   
Sbjct: 198 QPVRVS-------------IAAEQLTTPR-IRQTYYEVL-ARDKLDALCRVLD--AEMPQ 240

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
             ++   T++ A+D+ E L  R      +H ++    R  ++R  R G+ DVLV  ++  
Sbjct: 241 LAIVFCRTRQEADDIGERLQGRGYAAESLHGDLSQAARDRVMRRFREGQLDVLVATDVAA 300

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
            GLDI E   V   D           S +  IGR  R     V I +     + +   I+
Sbjct: 301 RGLDIAEVSHVINYDV-----PTDPESYVHRIGRTGRAGREGVAITFITPRERRMLQIIE 355

Query: 703 ETTRRR 708
             TR R
Sbjct: 356 RVTRTR 361


>gi|289167533|ref|YP_003445802.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
           DEAD-box family [Streptococcus mitis B6]
 gi|288907100|emb|CBJ21934.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
           DEAD-box family [Streptococcus mitis B6]
          Length = 521

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVD-QYYIRVKEQEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPASAEEAFQAKKQVALKKIERDFADETIRSNFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    + ++   ++ SL  Q
Sbjct: 409 AAEF---TPEELAMYILSLTVQ 427


>gi|116617572|ref|YP_817943.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096419|gb|ABJ61570.1| Superfamily II DNA and RNA helicase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 528

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 91/260 (35%), Gaps = 21/260 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +        E I I    L    V+   +R    +  D    I  
Sbjct: 176 QTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIFD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                L  ++   TKR  E+L+  L  R      +H ++    R  ++   +  + ++LV
Sbjct: 236 VQAPKL-AIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS 696
             ++   GLD+ +   V   D       +   S +  IGR  R     V + +       
Sbjct: 295 ATDVAARGLDVKDVSHVYNFD-----IPQDPESYVHRIGRTGRAGAKGVSVTFVAPNEMD 349

Query: 697 IQLAIDETTRRRE--KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
              A+++ T++R    +    K   I    +     EV   I   + +     +DA    
Sbjct: 350 YLRAVEDLTKKRMTPLEPASLKDARI--GKINNAAGEVAKLIDTTEVSEIQSQVDALTAK 407

Query: 755 LSKKKGKAH----LKSLRKQ 770
            S ++  A     +  L KQ
Sbjct: 408 YSAEQLAAAVLSSVADLEKQ 427


>gi|326538779|gb|ADZ86994.1| DEAD/DEAH box helicase domain protein [Brucella melitensis M5-90]
          Length = 455

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 152 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 201

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 202 LAERLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 261

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 262 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 321

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 322 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 371


>gi|315443280|ref|YP_004076159.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
 gi|315261583|gb|ADT98324.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
          Length = 561

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 9/160 (5%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +QG  +++ V TK+  E++ E L  R      ++ ++    R   I  L+ G  D+LV 
Sbjct: 248 TEQGDAMIVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTITQLKDGTIDILVA 307

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+     V   D           S +  IGR  R   S   L   T  +   
Sbjct: 308 TDVAARGLDVERISHVVNFD-----IPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHL 362

Query: 699 L-AIDETTRRREKQLEHNKKHNINPQSVKE---KIMEVID 734
           L AI+  TR++  + E     ++N + V +    I + +D
Sbjct: 363 LGAIERVTRQKLVESELPSVDDVNEKRVAKFRDSITDALD 402


>gi|260408201|gb|ACX37415.1| vasa [Botryllus schlosseri]
          Length = 655

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 91/260 (35%), Gaps = 38/260 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF-----RLPSCMDNR 511
            P  L ++        +D   V+   +  +   +  R     + GF     RL       
Sbjct: 335 TPGRLLDF--------IDRGKVSCECVEYIILDEADRM---LDMGFEPEIRRLLGAPGMP 383

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT--GLVDPPVEIRSARTQVE 569
                  +     T++ SAT      +     + +  +  T   +     ++  A  Q++
Sbjct: 384 -------DKNTRHTLMFSATFPDDIQKLAHEFLRDDFLFLTVGRVGGACSDVTQAMIQID 436

Query: 570 D------VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                  + + ++       R L+ V TKR A+ L   L + N+    +H + +  ER  
Sbjct: 437 HSEKRDKLMELLSDVPTTKARTLVFVDTKRNADFLATLLSQENLPTTSIHGDRQQREREM 496

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            + D + G   +L+  ++   GLDIP+   V   D   E         +  IGR  R  N
Sbjct: 497 ALVDFKNGTCPILIATSVAARGLDIPKVEHVINYDLPSE-----IDEYVHRIGRTGRCGN 551

Query: 684 SKVI--LYADTITKSIQLAI 701
                  Y D+   ++  ++
Sbjct: 552 LGTATSFYDDSKDGTLARSL 571


>gi|223056258|gb|ACM80367.1| vasa [Eucidaris tribuloides]
          Length = 498

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 68/188 (36%), Gaps = 17/188 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV---DPPVEIRSARTQVEDV-----YDEI 575
            T++ SAT  +   E+    + + +    G V      +E R    QVE         +I
Sbjct: 270 QTLMFSATFPNXVQERAGMYLNDYLFLXVGRVGGAASDIEQRVF--QVEQFAKREKLMDI 327

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +   R L+ V TKR A+ L   L +       +H +    ER E +    +GK  +
Sbjct: 328 LREQKDDDRTLVFVETKRNADFLASLLSQSGFPTTSIHGDRMQQEREEALHHFXIGKAPI 387

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
           LV  ++   GLDIP    V   D             +  IGR  R  N       Y    
Sbjct: 388 LVATSVAARGLDIPGVKHVVNYD-----LPDVIDEYVHRIGRTGRVGNLGRSTSFYDAGK 442

Query: 694 TKSIQLAI 701
             SI  A+
Sbjct: 443 DASIARAL 450


>gi|219847371|ref|YP_002461804.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219541630|gb|ACL23368.1| DEAD/DEAH box helicase domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 550

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   T++  +++ E L  R      +H ++    R  ++R  R G+ DVLV  ++   
Sbjct: 242 AIVFCRTRQEVDEIGERLQGRGYAAESLHGDLSQAVRDRVMRRFREGQLDVLVATDVAAR 301

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           GLDI E   V   D           S +  IGR  R   + V I +     + +   I+ 
Sbjct: 302 GLDIAEVSHVINYDV-----PTDPESYVHRIGRTGRAGRAGVAITFITPRERRMLQTIER 356

Query: 704 TTRRR 708
            TR R
Sbjct: 357 VTRTR 361


>gi|170578019|ref|XP_001894230.1| eukaryotic initiation factor 4A [Brugia malayi]
 gi|158599270|gb|EDP36940.1| eukaryotic initiation factor 4A, putative [Brugia malayi]
          Length = 413

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 17/134 (12%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   T+R  + L   + +    V  MH E++  ER  I+R+ R G   VL+  +LL 
Sbjct: 281 QAVIFCNTRRKVDYLAAQMSKEKYTVSCMHGEMEQNERDVIMREFRSGSSRVLITTDLLA 340

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            G+D+ +  LV   D        ++ + I  IGR+ R     V +            I E
Sbjct: 341 RGIDVQQVSLVINYD-----LPSNRENYIHRIGRSGRFGRKGVAINF----------ITE 385

Query: 704 TTRRREKQLE--HN 715
           T  R  K +E  +N
Sbjct: 386 TDMRMMKDIESFYN 399


>gi|325295336|ref|YP_004281850.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065784|gb|ADY73791.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 425

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 102/252 (40%), Gaps = 25/252 (9%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQVEDVYDEINLA 578
             T++ SAT   +E+ +     ++   +       L+ P V  R    + ED    +   
Sbjct: 186 KQTLLFSAT-MPYEIRKLIDNYLKSGYKTIKVGKNLITPKVHQRIIFVKSEDKLKALEKL 244

Query: 579 A--QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               QG   ++ V TKR A ++ + L +R+I  R +H ++   +R  +++  + GK   L
Sbjct: 245 LKEHQGTSTIVFVKTKRDAAEIEKELQKRSINARAIHGDLSQRQRENVMKAFKEGKVKTL 304

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DI + GLV   +        +  S +  IGR  R       +        
Sbjct: 305 VATDVAARGIDIKDVGLVINYE-----LPENPESYVHRIGRTGRAGREGTAISL------ 353

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVK-EKIMEVIDPILLEDAATTNISIDAQQLSL 755
               + +  +RR  +++   KH I P+  K   + ++   +L  D    +  I      L
Sbjct: 354 ----VADNEKRRIYRIK-GLKH-IKPEKFKANDLRDLKQDLLSADVGKVSEKIRKVAKEL 407

Query: 756 SKKKGKAHLKSL 767
            +++    + SL
Sbjct: 408 LRERDPEEVISL 419


>gi|302686080|ref|XP_003032720.1| hypothetical protein SCHCODRAFT_67353 [Schizophyllum commune H4-8]
 gi|300106414|gb|EFI97817.1| hypothetical protein SCHCODRAFT_67353 [Schizophyllum commune H4-8]
          Length = 652

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ L ++L    +    +H +    ER   +   R G+  +LV   +   
Sbjct: 433 TLVFVETKRMADGLCDFLLSHRMPATSIHGDRTQREREMALNTFRSGRTPILVATAVAAR 492

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           GLDIP    V   D             +  IGR  R  N+ V   + +   ++I   + E
Sbjct: 493 GLDIPNVTHVVNYD-----LPGDIDDYVHRIGRTGRAGNTGVSTAFFNRSNRNIVRELVE 547

Query: 704 TTR 706
             R
Sbjct: 548 LLR 550


>gi|328706401|ref|XP_001950362.2| PREDICTED: putative ATP-dependent RNA helicase Pl10-like
           [Acyrthosiphon pisum]
          Length = 681

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 17/192 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP----------VEIRSARTQVEDVYD 573
            T++ SAT         +  +   I    G V             VE R+ R+ + D+ +
Sbjct: 388 QTLMFSATFPKEIQMLARDFLDNYIFLAIGRVGSTSENITQKIVWVEDRNKRSYLLDLLN 447

Query: 574 EINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
              + ++     IL+ V TK+ A+ L E+LY     V  +H +    ER + ++  R G 
Sbjct: 448 ATPIRSKPAESLILVFVETKKGADSLEEFLYSNGYPVTSIHGDRTQREREDALKSFRSGN 507

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
             VLV   +   GLDIP    V   D             +  IGR  R  N      + +
Sbjct: 508 TPVLVATAVAARGLDIPHVTHVINYD-----LPSDVEEYVHRIGRTGRMGNLGLATSFFN 562

Query: 692 TITKSIQLAIDE 703
              +++   + E
Sbjct: 563 DKNRNLTRDLME 574


>gi|242767802|ref|XP_002341440.1| DEAD/DEAH box RNA helicase [Talaromyces stipitatus ATCC 10500]
 gi|218724636|gb|EED24053.1| DEAD/DEAH box RNA helicase [Talaromyces stipitatus ATCC 10500]
          Length = 1175

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 90/253 (35%), Gaps = 28/253 (11%)

Query: 523 PTTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEI 575
             T++ SAT P + E    +     VE I+    +V P +    E+R+  T+   + + +
Sbjct: 724 KQTVLFSATFPRNMEALARKTLNKPVEIIVGGRSVVAPEITQIVEVRNENTKFLRLLELL 783

Query: 576 NLA----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                  A +  R L+ V  +  A+ L   L  +      +H     ++R   I D + G
Sbjct: 784 GNLYSDEANEDARTLIFVDRQEAADSLLRELMRKGYPCMSIHGGKDQIDRDSTIADFKAG 843

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
            F VL+  ++   GLD+ +  LV   DA            +   GR  R  N+   +   
Sbjct: 844 IFPVLIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF- 897

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISID 749
                    + E   R    +    K      P+ V++ +   ++ +       +     
Sbjct: 898 ---------LTEDQERYSVDIAKALKQSGQAVPEPVQKLVDSFLEKVKAGKEKASASGFG 948

Query: 750 AQQLSLSKKKGKA 762
            + L    ++  A
Sbjct: 949 GKGLERLDQERDA 961


>gi|307709536|ref|ZP_07645990.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
 gi|307619667|gb|EFN98789.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
          Length = 523

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVD-QYYIRVKEQEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPASAEEAFQAKKQVALKKIERDFADETIRANFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    + ++   ++ SL  Q
Sbjct: 409 AAEF---TPEELAMYILSLTVQ 427


>gi|196014693|ref|XP_002117205.1| DEAD box ATP-dependent RNA helicase [Trichoplax adhaerens]
 gi|190580170|gb|EDV20255.1| DEAD box ATP-dependent RNA helicase [Trichoplax adhaerens]
          Length = 401

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 22/193 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              +++SAT     LE  +  + E +        +   G+    V +     + +   D+
Sbjct: 202 TQVVLLSATLPHDILEMTRKFMTEPMRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 261

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TKR  + LTE + E N  V  MH ++   ER  I+++ R G
Sbjct: 262 YDTLTIT-----QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSG 316

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
              VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R     V I + 
Sbjct: 317 ASRVLITTDVWARGIDVQQVSLVINYD-----LPNNRELYIHRIGRSGRYGRKGVAINFV 371

Query: 691 DTITKSIQLAIDE 703
            +    I   I++
Sbjct: 372 KSDDIRILRDIEQ 384


>gi|169850031|ref|XP_001831713.1| ATP-dependent RNA helicase ded-1 [Coprinopsis cinerea okayama7#130]
 gi|116507149|gb|EAU90044.1| ATP-dependent RNA helicase ded-1 [Coprinopsis cinerea okayama7#130]
          Length = 653

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 78/208 (37%), Gaps = 13/208 (6%)

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           G  +P   D + L F          +          L+    + V ++   +  +   +E
Sbjct: 357 GEDMPGVNDRQTLMFSATFPRDIQMLARDF------LKDYIFLSVGRVGSTSENITQKIE 410

Query: 561 IRSARTQVEDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
                 +   + D +   +++ +   L+ V TKRMA+ L+++L   N+    +H +    
Sbjct: 411 YVEDGDKRSVLLDILASQSKEDMGLTLVFVETKRMADMLSDFLIGNNMPATSIHGDRTQR 470

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           ER   ++  R G+  ++V   +   GLDIP    V   D             +  IGR  
Sbjct: 471 EREMALQTFRTGRTPIMVATAVAARGLDIPNVTHVVNYD-----LPSDIDDYVHRIGRTG 525

Query: 680 RNVNSKV-ILYADTITKSIQLAIDETTR 706
           R  N  V   + +   K+I   + E  R
Sbjct: 526 RAGNVGVSTAFFNRGNKNIVRDLVELLR 553


>gi|45382259|ref|NP_990158.1| probable ATP-dependent RNA helicase DDX5 [Gallus gallus]
 gi|5114446|gb|AAD40318.1|AF158370_1 DEAD-box RNA helicase [Gallus gallus]
          Length = 595

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 76/214 (35%), Gaps = 31/214 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA----- 578
            T++ SAT      +  +  + E +    G ++      SA   +  + D  +       
Sbjct: 262 QTLMWSATWPKEVRQLAEDFLKEYVHINIGALEL-----SANHNILQIVDVCHDVEKDDK 316

Query: 579 ---------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                    +++  + ++ V TKR  +DLT  +         +H +    ER  ++ + +
Sbjct: 317 LIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 376

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GK  +L+  ++   GLD+ +   V   D     +  S    I  IGR AR+  +     
Sbjct: 377 HGKAPILIATDVASRGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKTGTAYT 431

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
             T        I +        +       INP+
Sbjct: 432 FFTPNN-----IKQVND--LISVLREANQAINPK 458


>gi|114567412|ref|YP_754566.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338347|gb|ABI69195.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 530

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/274 (20%), Positives = 97/274 (35%), Gaps = 33/274 (12%)

Query: 524 TTIVVSATPGSWELEQ-CQGIIVEQIIRPTGLVDPPVEIRSARTQVE-----DVYDEINL 577
            T + SAT      E   + +   +II          EI     QV      +    I  
Sbjct: 178 QTFLFSATLPDEVRELGTKFMKQPEIILIESPERTVPEIEQYYYQVNSRRKIETLCRIID 237

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A Q  +  L+   TKR A++L   L  R      +H ++   ER  ++   R G   +LV
Sbjct: 238 AQQPPIS-LIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTKILV 296

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS 696
             +L   GLDI     V   D           S I  +GR  R   S + I   +     
Sbjct: 297 ATDLAARGLDIELVTHVFNFD-----IPEDLDSYIHRVGRTGRAGRSGIAITLVEPTQIR 351

Query: 697 IQLAIDE-TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
           +   I+  T +R E+ L          ++V+++   +++ +    A   ++ +   +  +
Sbjct: 352 LLRMIERHTGKRIERALLPTLA-----EAVEKRQDLLLERVRQASAEPGDVCLSLAEKLM 406

Query: 756 SKKKGKAHLKSLRKQMHLAADNL------NFEEA 783
            +   +         M  AA  L      +FE A
Sbjct: 407 QQGDPEK--------MLAAALKLLIDEEPDFEMA 432


>gi|301755880|ref|XP_002913778.1| PREDICTED: nucleolar RNA helicase 2-like [Ailuropoda melanoleuca]
          Length = 794

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 100/254 (39%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSAT------PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVY- 572
           P T++ SAT        + +  +     V+ I + T      VE   I+   TQ   V  
Sbjct: 371 PQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIG 430

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++ +  +    + +H ++   +R   ++  R G 
Sbjct: 431 DVIRVYSGFHGRTIIFCETKKEAQELSQNVSIKQ-DAQSLHGDIPQKQREITLKGFRNGD 489

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + + +    
Sbjct: 490 FGVLVATNVAARGLDIPEVDLVVQSSPPKDV-----ESYIHRSGRTGRAGRTGICICFYQ 544

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QLA          Q+E  +K  I  + +       I     +DA     S+    
Sbjct: 545 HKEEYQLA----------QVE--QKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTA 592

Query: 753 LSLSKKKGKAHLKS 766
           +S  K+  +  ++ 
Sbjct: 593 VSHFKQSAEKLIEE 606


>gi|297675282|ref|XP_002815615.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Pongo abelii]
          Length = 705

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 521 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRYGKCPVLVATSV 580

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 581 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 632


>gi|297675280|ref|XP_002815614.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Pongo abelii]
          Length = 725

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 541 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRYGKCPVLVATSV 600

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 601 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 652


>gi|258648442|ref|ZP_05735911.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           tannerae ATCC 51259]
 gi|260851194|gb|EEX71063.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           tannerae ATCC 51259]
          Length = 484

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 86/221 (38%), Gaps = 12/221 (5%)

Query: 490 DFHRKATLA--EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGS-WELEQCQGIIV 545
           D  R   L   E    L     +  L+  +    +  TI+ SAT P    EL        
Sbjct: 152 DLSRTTHLVLDEADRMLDMGFSDDILKIVKHLPEQRQTILFSATMPAKIRELAHKIMHNP 211

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINL--AAQQGLRILLTVLTKRMAEDLTEYLY 603
           E++          +       +  D    I    A Q+  R+++   +K+  ++L   L 
Sbjct: 212 EEVSIAISKPAENIRQSLFICKENDKTAIIKHLFADQKPERVIIFCGSKQKVKELNITLK 271

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            +   V  MHS+++  +R E++   + G+ D+LV  +++  G+DI +  LV   D  ++ 
Sbjct: 272 RKGYNVEAMHSDLEQKQRDEVMLGFKAGRIDILVATDIVARGIDIDDITLVINYDVPRD- 330

Query: 664 FLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAIDE 703
                   +  IGR AR   N + +       +     I++
Sbjct: 331 ----AEDYVHRIGRTARAGRNGRAVTLVGEKDRYALRNIEQ 367


>gi|158290214|ref|XP_311826.4| AGAP003047-PA [Anopheles gambiae str. PEST]
 gi|157017787|gb|EAA07964.4| AGAP003047-PA [Anopheles gambiae str. PEST]
          Length = 636

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 63/178 (35%), Gaps = 18/178 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP----------VEIRSARTQVEDVYD 573
            T++ SAT      E     +   I    G V             VE    R+ + D+  
Sbjct: 362 QTLMFSATFPKAIQELASDFLYRYIFLAVGRVGSTSVNITQTIFWVEENIKRSHLLDLLS 421

Query: 574 EINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
            I             L+ V TK+ A+ L E+LY  N  V  +H +    ER E +R  R 
Sbjct: 422 NITKQNDGDDENCLTLIFVETKKAADSLEEFLYNHNFPVTSIHGDRTQAEREEALRLFRC 481

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           G+  +LV   +   GLDIP    V   D   E         +  IGR  R  N     
Sbjct: 482 GRCPILVATAVAARGLDIPNVKQVINFDLPAEV-----EEYVHRIGRTGRMGNLGTAT 534


>gi|49475435|ref|YP_033476.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
 gi|49238241|emb|CAF27451.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
          Length = 467

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 15/192 (7%)

Query: 524 TTIVVSATPGSWELEQC----QGIIVEQIIRPTGLVDPPVE--IRSARTQVED---VYDE 574
            T+  SAT      +         +  ++ + +       +  ++S     +    + + 
Sbjct: 184 QTLFFSATMAPEITKLTKQFLHSPVTVEVTKASSTASTITQRLVKSGNKAWDKRAVLREL 243

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I+    +    ++    KR   +L   L   N  V  +H ++    R+  + D +  K  
Sbjct: 244 IHNEGDKLKNAIIFCNRKRDISELLRSLIRHNFSVGALHGDMDQYSRMSTLADFKDNKIT 303

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTI 693
           +LV  ++   GLDIP    V   D             I  IGR  R N + K        
Sbjct: 304 LLVASDVAARGLDIPAVSHVFNYDV-----PTHAEDYIHRIGRTGRANRSGKAFTIVTKT 358

Query: 694 TKSIQLAIDETT 705
            +    AI+E +
Sbjct: 359 DQKYINAIEEIS 370


>gi|320103060|ref|YP_004178651.1| DEAD/DEAH box helicase domain-containing protein [Isosphaera
           pallida ATCC 43644]
 gi|319750342|gb|ADV62102.1| DEAD/DEAH box helicase domain protein [Isosphaera pallida ATCC
           43644]
          Length = 422

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 15/195 (7%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-----SARTQVEDVYDEINL 577
             T+++SAT            + E +       +P VE             +       L
Sbjct: 187 HQTLLLSATLSPEVRRLAARYMHEPVELNLSRDEPSVEKIVQKYIPVDHNRKMELLLHLL 246

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             ++  + ++   TKR A+ L + L  R   V  +H ++    R  ++R  R G   +LV
Sbjct: 247 ELEKPRQCIVFCRTKRGADKLAQRLARRYPGVATIHGDLPQTARNRVMRGFRDGSIPILV 306

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-- 695
             +++  G+D+ E   V   D           + +  IGR  R     V        +  
Sbjct: 307 ATDVVGRGIDVEEISHVVNYD-----IPDDPENYLHRIGRTGRMGKDGVAYTFVGPDEGI 361

Query: 696 ---SIQLAIDETTRR 707
              +I++ I++T  R
Sbjct: 362 PLTNIEVLINKTLER 376


>gi|319951788|ref|YP_004163055.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319420448|gb|ADV47557.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 429

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 72/195 (36%), Gaps = 19/195 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGII--VEQI-IRPTGLVDPPVE----IRSARTQVEDVYDE 574
           +  ++  SAT     +E  Q I+   EQ+ I+P       VE          +V+ +   
Sbjct: 179 KRQSLFFSATMPKTIVELSQKILGEFEQVTIKPEQATAEKVEQAIYFVPKGDKVKLLVHL 238

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I     +   +L+   TK  A  + + L +  I    +H       R   + D + GK  
Sbjct: 239 IETKEAK--AVLVFSRTKHGANKIVKLLDKAGINAAAIHGNKSQTARQNALNDFKDGKLT 296

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DI +  LV   D           + +  IGR  R   S V L      
Sbjct: 297 VLVATDIAARGIDIDDLSLVVNYD-----LPNVPETYVHRIGRTGRANASGVALSFCDRE 351

Query: 695 -----KSIQLAIDET 704
                K IQ  I +T
Sbjct: 352 ERAYLKDIQKLIKQT 366


>gi|315042594|ref|XP_003170673.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Arthroderma
           gypseum CBS 118893]
 gi|311344462|gb|EFR03665.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Arthroderma
           gypseum CBS 118893]
          Length = 1183

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 87/252 (34%), Gaps = 28/252 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     +E I+    +V P +    E+R+   +   + + + 
Sbjct: 733 QTVLFSATFPRNMEALARKTLSKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLELLG 792

Query: 577 LAAQQGL----RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 793 NLYSDDENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKAGI 852

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F +L+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 853 FPILIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 905

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K      P+ V++ +   +D +       +      
Sbjct: 906 --------LTEDQERYSVDISKALKQSGQPVPEPVQKMVTAFLDKVKEGKEKASGSGFGG 957

Query: 751 QQLSLSKKKGKA 762
           + L    ++  A
Sbjct: 958 KGLERLDQERDA 969


>gi|108800931|ref|YP_641128.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119870071|ref|YP_940023.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           KMS]
 gi|126436556|ref|YP_001072247.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           JLS]
 gi|108771350|gb|ABG10072.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. MCS]
 gi|119696160|gb|ABL93233.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. KMS]
 gi|126236356|gb|ABN99756.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. JLS]
          Length = 557

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 87/222 (39%), Gaps = 14/222 (6%)

Query: 523 PTTIVVSAT--PGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL-- 577
               + SAT  PG  ++ +      VE  ++        +  R  +       D +    
Sbjct: 187 KQVALFSATMPPGIKKITKKYLHDPVEVTVKSKTQTAENITQRYIQVSYPRKMDALTRLL 246

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +QG  +++ V TK+  E++ E L  R      ++ ++    R   I  L+ G  D+LV
Sbjct: 247 ETEQGDGMIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTISQLKDGSIDILV 306

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS- 696
             ++   GLD+     V   D           S +  IGR  R   S   L   T  +  
Sbjct: 307 ATDVAARGLDVERISHVVNFD-----IPHDPESYVHRIGRTGRAGRSGTALLFVTPRERH 361

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKE---KIMEVIDP 735
           +  +I+  TR++  +++     ++N Q V++    I E ++ 
Sbjct: 362 LLNSIERVTRQKLVEIQLPSVEDVNAQRVEKFRDSIGEALNA 403


>gi|145222813|ref|YP_001133491.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           gilvum PYR-GCK]
 gi|145215299|gb|ABP44703.1| ATP-dependent RNA helicase CsdA [Mycobacterium gilvum PYR-GCK]
          Length = 559

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 9/160 (5%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +QG  +++ V TK+  E++ E L  R      ++ ++    R   I  L+ G  D+LV 
Sbjct: 248 TEQGDAMIVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTIAQLKDGTIDILVA 307

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+     V   D           S +  IGR  R   S   L   T  +   
Sbjct: 308 TDVAARGLDVERISHVVNFD-----IPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHL 362

Query: 699 L-AIDETTRRREKQLEHNKKHNINPQSVKE---KIMEVID 734
           L AI+  TR++  + E     ++N + V +    I + +D
Sbjct: 363 LGAIERVTRQKLVESELPSVDDVNEKRVAKFRDSITDALD 402


>gi|307705294|ref|ZP_07642156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
 gi|307621081|gb|EFO00156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
          Length = 520

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 75/200 (37%), Gaps = 16/200 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV 
Sbjct: 236 VEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R   S   I +        
Sbjct: 296 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGY 350

Query: 698 QLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
              I+  T++R K       +     K  +  + ++    +       E        + A
Sbjct: 351 LQIIENLTKKRMKGLKPASTEEAFQAKKQVALKKIERDFADETIRANFEKFGKDARKLAA 410

Query: 751 QQLSLSKKKGKAHLKSLRKQ 770
           +    + ++   ++ SL  Q
Sbjct: 411 EF---TPEELAMYILSLTVQ 427


>gi|255326780|ref|ZP_05367856.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
 gi|255295997|gb|EET75338.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
          Length = 744

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 6/157 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TK+  E++ + L  R      ++ ++    R   +  LR G+ D+LV  ++   
Sbjct: 314 IIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDVAAR 373

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+    LV   D           S +  IGR  R       IL+     K +   I++
Sbjct: 374 GLDVERISLVVNYD-----IPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQIEK 428

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
            TR++ + +       +N    +    ++ + I  ED
Sbjct: 429 ATRQKVEPMHMPTAEAVNETRKQRFAQQITETIESED 465


>gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
           biprosthecum C19]
 gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
           biprosthecum C19]
          Length = 606

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 65/195 (33%), Gaps = 13/195 (6%)

Query: 521 LRPTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            +   +  SAT    E+             VE     T       ++     Q +     
Sbjct: 179 KKRQNLFFSAT-MPKEIGVLASELLTDPKRVEITPEATTAERVSQQVLFIEAQRKRALLS 237

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              A     R L+   TKR A+ +  YL    +    +H +    +R   ++  R GK  
Sbjct: 238 EMYADAVLERTLVFTRTKRSADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFRAGKVR 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
            LV  ++   G+D+     V   +           + +  IGR AR   S V I      
Sbjct: 298 ALVATDIAARGIDVDNVSHVINYE-----LPNVAEAYVHRIGRTARAGKSGVSITLCADD 352

Query: 694 TKSIQLAIDETTRRR 708
            + +   I+  TR+R
Sbjct: 353 ERRLLKDIERVTRQR 367


>gi|255017210|ref|ZP_05289336.1| hypothetical protein LmonF_04463 [Listeria monocytogenes FSL
           F2-515]
          Length = 394

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 75/191 (39%), Gaps = 11/191 (5%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P     E+         I+   +    +E    +   ++ +D ++    
Sbjct: 177 QTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLD 236

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV 
Sbjct: 237 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R       I +        
Sbjct: 297 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGY 351

Query: 698 QLAIDETTRRR 708
              ++ETT++R
Sbjct: 352 LRIVEETTKKR 362


>gi|150008034|ref|YP_001302777.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
 gi|149936458|gb|ABR43155.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
          Length = 426

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 29/194 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       E I++   +   P +++  +     
Sbjct: 183 QTIMFSATMPPKIRTLAKTILKDPEEVKIAISRPPESIMQTAYICYDPQKLKILQD---- 238

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                     +  R+++   +K   ++L   L      V  MHS+++  +R E++++ + 
Sbjct: 239 -----LFTQSRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKS 293

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVIL 688
           G  D+LV  +++  G+DI +  LV   D             +  IGR AR  N     I 
Sbjct: 294 GHIDILVATDVVARGIDINDIKLVVNFD-----IPHDPEDYVHRIGRTARGTNGEGLAIT 348

Query: 689 YADTITKSIQLAID 702
           +     ++    I+
Sbjct: 349 FVSIDEQAQFKRIE 362


>gi|55821544|ref|YP_139986.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55737529|gb|AAV61171.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
          Length = 528

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 100/261 (38%), Gaps = 23/261 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
            T++ SAT     +++     ++      I+   L +  V+    R + ++ +D +    
Sbjct: 176 QTLLFSAT-MPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLM 234

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ IIRD + G+ D+LV
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +  
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMG 349

Query: 698 QLAIDET-TRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
            L I E  T++R K       Q     K  +  + ++    +  D  +  +         
Sbjct: 350 YLGIIENLTKKRMKGLKPPTAQEAFQSKKKVALKKIER---DFADEAIHANFDKFKDDAV 406

Query: 750 AQQLSLSKKKGKAHLKSLRKQ 770
                 + ++   ++ SL  Q
Sbjct: 407 KLAQEFTPEELALYILSLTVQ 427


>gi|85001586|ref|XP_955506.1| dead box RNA helicase [Theileria annulata strain Ankara]
 gi|65303652|emb|CAI76030.1| dead box RNA helicase, putative [Theileria annulata]
          Length = 654

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 63/171 (36%), Gaps = 8/171 (4%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT  S          +E    P    +          +V+D   +   +     
Sbjct: 456 QTLMFSATWPSEIKRLASEFYLELTANPNIKQNFE---FPNSYEVKDNLFDFLGSLAPEK 512

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+    K  A+ LT  L  R  R   +H      +R  I+   R G+F++LV  ++  
Sbjct: 513 KVLIFSDLKSFADQLTSALRYRRFRAYSLHGNKTQNQRERILNMYRSGEFNILVATDVAA 572

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
            GLDI +   V  LD  K     S    I  IGR  R  N    L    I 
Sbjct: 573 RGLDIKDIDYVINLDVPK-----SLLDYIHRIGRTGRGNNKGESLLYFPID 618


>gi|255023649|ref|ZP_05295635.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-208]
          Length = 399

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 75/191 (39%), Gaps = 11/191 (5%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P     E+         I+   +    +E    +   ++ +D ++    
Sbjct: 179 QTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLD 238

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L+  L  R      +H ++   +R+ ++R  + GK DVLV 
Sbjct: 239 VQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVA 298

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R       I +        
Sbjct: 299 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGY 353

Query: 698 QLAIDETTRRR 708
              ++ETT++R
Sbjct: 354 LRIVEETTKKR 364


>gi|303390338|ref|XP_003073400.1| DEAD box RNA helicase-like protein [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302546|gb|ADM12040.1| DEAD box RNA helicase-like protein [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 493

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 76/194 (39%), Gaps = 15/194 (7%)

Query: 524 TTIVVSAT-PGS-------WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT P         +  +  Q ++  + ++    +   +E+ S R + + +   +
Sbjct: 267 QTLMWSATWPREVRGLAESYMNDYIQVVVGNEELKTNSKIKQVIEVCSGREKEDKLLGVL 326

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +    +G ++++    KR  +DL   L         +H +     R +++ D R G+  +
Sbjct: 327 DKF--KGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPI 384

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+   +   GLD+ +  LV   D     F  +    +  IGR AR    + I +      
Sbjct: 385 LIATEVAGRGLDVNDVKLVINFD-----FPGTCEDYVHRIGRTARGNTKEGISHTFFTIN 439

Query: 696 SIQLAIDETTRRRE 709
               A +     RE
Sbjct: 440 DKGNARELIRMLRE 453


>gi|293189188|ref|ZP_06607912.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
 gi|292821860|gb|EFF80795.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
          Length = 502

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 16/183 (8%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE-------- 574
            T++ SAT PG       + ++    IR     D    + + +  +  V+          
Sbjct: 248 HTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNKVEVVAR 307

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I  A  +G R ++   TKR A  L E L  R   V  +H ++    R + +R  R GK D
Sbjct: 308 ILQAEGRG-RTVIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQGAREQALRAFRNGKVD 366

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           VLV  ++   G+D+ +   V             +   I  IGR  R  NS   + + D  
Sbjct: 367 VLVATDVAARGIDVDDVTHVINYQC-----PEDEKIYIHRIGRTGRAGNSGTAVTFVDWD 421

Query: 694 TKS 696
              
Sbjct: 422 DTP 424


>gi|195054323|ref|XP_001994075.1| GH22875 [Drosophila grimshawi]
 gi|193895945|gb|EDV94811.1| GH22875 [Drosophila grimshawi]
          Length = 799

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 64/177 (36%), Gaps = 17/177 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--------IRSARTQ--VEDVYD 573
            T++ SAT      E     +   I    G V    E        +     +  + D+  
Sbjct: 487 QTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTLLWVYDQDKRSYLLDLLS 546

Query: 574 EINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            I    +  +    L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R  R G
Sbjct: 547 SIRDGPEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSG 606

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              +LV   +   GLDIP    V   D             +  IGR  R  N  V  
Sbjct: 607 DCPILVATAVAARGLDIPHVTHVINFD-----LPTDVEEYVHRIGRTGRMGNLGVAT 658


>gi|322385798|ref|ZP_08059442.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC
           51100]
 gi|321270536|gb|EFX53452.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC
           51100]
          Length = 524

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 98/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVD-QYYIRVKENEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              L I+  T++R K       +     K  +  + ++    +  D  +  +    +   
Sbjct: 349 GYLLIIENLTKKRMKGLKPATAEEAFQAKKRVALKKIER---DFADESIRSNFDKFSKDA 405

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
                  S ++   ++ SL  Q
Sbjct: 406 RKLAAEFSPEELAMYILSLTVQ 427


>gi|320353576|ref|YP_004194915.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320122078|gb|ADW17624.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 411

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 90/255 (35%), Gaps = 30/255 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL--R 514
            P  L +++ +      D        I  +   +  R   L   GF      D R L  R
Sbjct: 130 TPGRLIDFLKQKIYTLAD--------IEMLVIDEADRMFDL---GFI----GDLRFLLRR 174

Query: 515 FEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE--IRSARTQVE 569
              ++      ++ SAT      EL      + E++ +    +    +E  +    ++ +
Sbjct: 175 LPAFDKR--QNLMFSATLNHRVMELAYEFMNMPEKVSVSGDSMTADKIEEILFHVSSKEK 232

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                  L  +   R ++ V TKR  E L   L   +   R +  +V   +R+ I+RD +
Sbjct: 233 FPLLLGLLRREGMERTMIFVNTKREGERLQARLMANDHPCRLISGDVAQEKRLRIMRDFK 292

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVIL 688
            GK  +L+  ++   GL I     V   D             +  IGR AR     K I 
Sbjct: 293 AGKLPMLIATDVASRGLHIEGVSHVINYD-----LPEDCEDYVHRIGRTARAGAEGKAIS 347

Query: 689 YADTITKSIQLAIDE 703
            AD        AI+E
Sbjct: 348 LADETGVLSLEAIEE 362


>gi|315604928|ref|ZP_07879985.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313364|gb|EFU61424.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 598

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 16/183 (8%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE-------- 574
            T++ SAT PG       + ++    IR     D    + + +  +  V+          
Sbjct: 255 HTMLFSATMPGPVVALARRFMVHPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNKVEVVAR 314

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I  A  +G R ++   TKR A  L E L  R   V  +H ++    R + +R  R GK D
Sbjct: 315 ILQAEGRG-RTVIFCRTKRTAARLGEDLTARGFAVGALHGDLGQGAREQALRAFRKGKVD 373

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           VLV  ++   G+D+ +   V             +   I  IGR  R  NS   + + D  
Sbjct: 374 VLVATDVAARGIDVDDVTHVINYQC-----PEDEKIYIHRIGRTGRAGNSGTAVTFVDWD 428

Query: 694 TKS 696
              
Sbjct: 429 DTP 431


>gi|171677330|ref|XP_001903616.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936733|emb|CAP61391.1| unnamed protein product [Podospora anserina S mat+]
          Length = 652

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 8/140 (5%)

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ---QGLRILLTVLTKRMAEDLTEYLYER 605
           ++    ++  VE+   R + + + + +  A +   +  RIL+  L K+ A  + ++L  R
Sbjct: 453 LQANSRIEQKVEVVDPRGKEQRLLELLREAQKGSAKNDRILVFCLYKKEAVRVEQFLERR 512

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            IRV  +H +++  +R + +   + G   VLV  ++   GLDIPE  LV  +      F 
Sbjct: 513 GIRVASIHGDLRQDQRTKSLEAFKAGTTSVLVATDVAARGLDIPEVKLVINV-----TFP 567

Query: 666 RSKTSLIQTIGRAARNVNSK 685
            +    +  IGR  R   + 
Sbjct: 568 LTIEDYVHRIGRTGRAGKTG 587


>gi|303328313|ref|ZP_07358751.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
 gi|302861643|gb|EFL84579.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
          Length = 593

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 80/198 (40%), Gaps = 19/198 (9%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPTGLVDPPV------EIRSARTQVEDVYDEI 575
             I+ SAT  P   EL +      E +     ++  P       E+R  + +++ +   +
Sbjct: 178 QRILFSATMPPPIRELSKRFLREPEMLTIAHKMLTIPAIEQTYYEVRPYQ-KMDALCRVL 236

Query: 576 NLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +    QG R  L+   TKR  +++T +L +R  +   +H ++   +R  +++  R    +
Sbjct: 237 D---SQGFRKALVFCSTKRGVDEVTTHLQQRGYQSDGLHGDLAQAQRDRVMQRFRTEGLE 293

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   G+D+ +   V   D             +  +GR  R           T+ 
Sbjct: 294 ILVATDVAARGIDVDDVDAVINYD-----MPHDVEKYVHRVGRTGRAGRVGSAFTFVTMR 348

Query: 695 KSIQLA-IDETTRRREKQ 711
           +  +L  I   T+ R KQ
Sbjct: 349 EQYKLRDIIRCTKARIKQ 366


>gi|291000796|ref|XP_002682965.1| predicted protein [Naegleria gruberi]
 gi|284096593|gb|EFC50221.1| predicted protein [Naegleria gruberi]
          Length = 346

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 22/193 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              +++SAT  +  LE  Q  + + I        +   G+    + +     + E   D+
Sbjct: 147 TQIVLISATLPAEVLEITQQFMTDPIRILVKRDEVTLEGIKQFFIAVEKEDWKFETLCDL 206

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++    +   E L + + + N  V +MH ++   ER  I+ + R G
Sbjct: 207 YDSLTVT-----QAVIFCNKRDKVEWLAKQMKKHNFTVSFMHGQMPQKEREAIMEEFRKG 261

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
           +  VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V I + 
Sbjct: 262 QSRVLITTDVWARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGRYGRKGVAINFV 316

Query: 691 DTITKSIQLAIDE 703
             +   +   I++
Sbjct: 317 TEMDVGVLKDIEQ 329


>gi|265991134|ref|ZP_06103691.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265999460|ref|ZP_05466486.2| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|263001918|gb|EEZ14493.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094098|gb|EEZ18020.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409073|gb|ADZ66138.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis M28]
          Length = 462

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 159 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 208

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 209 LAERLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 268

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 269 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISH 328

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 329 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 378


>gi|256840789|ref|ZP_05546297.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
 gi|298376614|ref|ZP_06986569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
 gi|301309869|ref|ZP_07215808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
 gi|256738061|gb|EEU51387.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
 gi|298266492|gb|EFI08150.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
 gi|300831443|gb|EFK62074.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
          Length = 426

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 29/194 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       E I++   +   P +++  +     
Sbjct: 183 QTIMFSATMPPKIRTLAKTILKDPEEVKIAISRPPESIMQTAYICYDPQKLKILQD---- 238

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                     +  R+++   +K   ++L   L      V  MHS+++  +R E++++ + 
Sbjct: 239 -----LFTQSRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKS 293

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVIL 688
           G  D+LV  +++  G+DI +  LV   D             +  IGR AR  N     I 
Sbjct: 294 GHIDILVATDVVARGIDINDIKLVVNFD-----IPHDPEDYVHRIGRTARGTNGEGLAIT 348

Query: 689 YADTITKSIQLAID 702
           +     ++    I+
Sbjct: 349 FVSIDEQAQFKRIE 362


>gi|312086742|ref|XP_003145197.1| hypothetical protein LOAG_09622 [Loa loa]
 gi|307759639|gb|EFO18873.1| hypothetical protein LOAG_09622 [Loa loa]
          Length = 495

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 103/303 (33%), Gaps = 65/303 (21%)

Query: 461 LFEYIPED-------SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
           L +Y+  +         L  DE+   + Q+ G Y                LP C D   L
Sbjct: 203 LCDYLQNEVLELRHLHFLVFDEADRLL-QMEGFYHDLIEN---------LLPKCRDIPNL 252

Query: 514 R--------FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565
           R        + +   L+   ++ +AT             +EQ +         VE+   R
Sbjct: 253 RKMLFSATDYNDLAELKNEFLMPNATKVVVGALNSVNPFIEQRV-------LKVEVHERR 305

Query: 566 TQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
             + D+  ++ L        + ++ V TKR A  +  YL  +  +   +H  +    R E
Sbjct: 306 KVLLDLIQDMYLNMNDNPLSKTIIFVNTKRFATVIASYLSLKGYKAYPIHGNLTAKLRRE 365

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            I  L+ G   ++V  ++   GLDI     +   +  K     S  S +  +GR  R  N
Sbjct: 366 AIEALQSGDCHIIVSTDVAARGLDIKGISHIINYEIPK---PESFLSYVHRVGRTGRVGN 422

Query: 684 SK--VILYADTITKSI----------------------QLAIDETTRRREKQLEH----N 715
                  +A ++   +                      +  ID    +R+K+ E+    N
Sbjct: 423 VGRATTFFAPSVDHGMTLILYKWLEMNKQAIPAFLLEAKHRIDTEDLQRKKREEYEQAFN 482

Query: 716 KKH 718
           + H
Sbjct: 483 ESH 485


>gi|66475700|ref|XP_627666.1| Rok1p, eIF4A-1-family RNA SFII helicase [Cryptosporidium parvum
           Iowa II]
 gi|32398898|emb|CAD98363.1| dead box RNA helicase, possible [Cryptosporidium parvum]
 gi|46229099|gb|EAK89948.1| Rok1p, eIF4A-1-family RNA SFII helicase [Cryptosporidium parvum
           Iowa II]
 gi|323508863|dbj|BAJ77324.1| cgd6_3210 [Cryptosporidium parvum]
          Length = 480

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 8/130 (6%)

Query: 569 EDVYDEINLAAQQG---LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +   + +    +QG   L  L+   +K  A+ L + L   N+ V  +HS++  ++R  II
Sbjct: 317 DAKIESLRQLIKQGKIMLPTLVFTNSKDDAQRLFKKLMYDNLIVEAIHSDMPKVKRDNII 376

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +  R GK  +L+  +L+  G+D      V   D     F  S ++ I  +GR  R   + 
Sbjct: 377 QRFRTGKIWILICTDLMARGVDFKNVSCVVNYD-----FPHSPSNYIHRVGRCGRAGRTG 431

Query: 686 VILYADTITK 695
             +   T+  
Sbjct: 432 YAITFFTLRD 441


>gi|329119861|ref|ZP_08248535.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464017|gb|EGF10328.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 444

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   +V   +E    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKNPEVV--EIERVDEQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   S + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRSGIAVTFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|319938761|ref|ZP_08013125.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
           1_2_62CV]
 gi|319811811|gb|EFW08077.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
           1_2_62CV]
          Length = 565

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 79/218 (36%), Gaps = 17/218 (7%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    +  D    +    +Q    ++   TKR  ++LT  L  R  R   +H ++   +
Sbjct: 266 IRVKENEKFDTMTRLMD-VEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGK 324

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ ++RD + G  DVLV  ++   GLDI     V   D       +   S +  IGR  R
Sbjct: 325 RLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGR 379

Query: 681 NVNSK-VILYADTITKSIQLAIDETTRRREKQL-------EHNKKHNINPQSVKEKIMEV 732
              S   I +           I+  T++R K +           K  +  + ++    + 
Sbjct: 380 AGKSGQSITFVAPNEMGYLQIIENLTKKRMKGMKPATAEEAFQAKKKVALKKIERDFADE 439

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQ 770
                 E        +  +    + ++   ++ +L  Q
Sbjct: 440 NIRNQFEKFGKDARKLATEF---TPEELALYILTLTVQ 474


>gi|148978426|ref|ZP_01814920.1| putative ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145962452|gb|EDK27731.1| putative ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 428

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 78/214 (36%), Gaps = 36/214 (16%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           +  T++ SAT              EQ+      L+  P+E++        +   +    +
Sbjct: 192 KKQTLLFSAT------------FPEQVQTLTHELLTDPIEVQLQSANASTLVQRV-FEVE 238

Query: 581 QGLRI---------------LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +G +                L+ V  K   E L + LY+R I     H +     R  I+
Sbjct: 239 KGRKTALLAHLIQQHEWRQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRIL 298

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D + G+ DVL+  ++   GLDI +  +V   D       RS +  +  IGR+ R     
Sbjct: 299 EDFKSGEIDVLIATDIAARGLDIEKLPVVINFD-----LPRSPSDYMHRIGRSGRAGEVG 353

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
           + L            I E  ++ + +LE  +   
Sbjct: 354 LALSLIDHEDYHHFKIIE--KKNKIRLEREQIEG 385


>gi|261758239|ref|ZP_06001948.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|261738223|gb|EEY26219.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
          Length = 462

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 159 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 208

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 209 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 268

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 269 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGSSH 328

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 329 VVNYDPPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 378


>gi|327191069|gb|EGE58122.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
          Length = 499

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 64/193 (33%), Gaps = 18/193 (9%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T+  SAT  P   +L        E++ +         V  R   +  +D      L   
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPERVEVAKPASAAKTVTQRFVASHSKDYEKRAVLREL 239

Query: 579 -AQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              QG     ++    K+   DL   L      V  +H ++    R  ++++ R G   +
Sbjct: 240 VRAQGELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTTMLQNFRDGNLQL 299

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT--- 692
           LV  ++   GLDIP+   V   D             +  IGR  R   S       T   
Sbjct: 300 LVASDVAARGLDIPDVSHVFNFDVPI-----HSEDYVHRIGRTGRAGRSGAAFTLVTKRD 354

Query: 693 --ITKSIQLAIDE 703
                +I+  I E
Sbjct: 355 TKFVDAIEKLIGE 367


>gi|326505994|dbj|BAJ91236.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 685

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 17/192 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP----------VEIRSARTQVEDVYD 573
            T++ SAT         +  +   I    G V             VE R+ R+ + D+ +
Sbjct: 393 QTLMFSATFPKEIQMLARDFLDNYIFLAIGRVGSTSENITQKIVWVEDRNKRSYLLDLLN 452

Query: 574 EINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
              + +Q     IL+ V TK+ A+ L E+LY     V  +H +    ER + ++  R G 
Sbjct: 453 ATPIRSQPAESLILVFVETKKGADSLEEFLYSNGYPVTSIHGDRTQREREDALKSFRSGN 512

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
             VLV   +   GLDIP    V   D             +  IGR  R  N      + +
Sbjct: 513 TPVLVATAVAARGLDIPHVTHVINYD-----LPSDVEEYVHRIGRTGRMGNLGLATSFFN 567

Query: 692 TITKSIQLAIDE 703
              +++   + E
Sbjct: 568 DKNRNLTRDLME 579


>gi|322700629|gb|EFY92383.1| ATP-dependent RNA helicase dbp-2 [Metarhizium acridum CQMa 102]
          Length = 552

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 74/191 (38%), Gaps = 16/191 (8%)

Query: 519 NCLRP--TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
             +RP   T++ SAT           ++ +  Q  I    +     +   VE+ S   + 
Sbjct: 309 EQIRPDRQTLMYSATWPKEVRAMAADFQTDFIQVNIGSMDLSANHRITQIVEVVSDMEKR 368

Query: 569 EDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           + +   +    +    +IL+ V TKR+A+D+T +L +       +H + +  ER  ++  
Sbjct: 369 DRMIKHLEQVMENKENKILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQ 428

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + GK  ++V  ++   G+D+     V   D     +  +    I  IGR  R       
Sbjct: 429 FKTGKSPIMVATDVASRGIDVRNITHVLNYD-----YPNNSEDYIHRIGRTGRAGAKGTA 483

Query: 688 LYADTITKSIQ 698
           +   T     Q
Sbjct: 484 ITFFTTDNQKQ 494


>gi|260945385|ref|XP_002616990.1| hypothetical protein CLUG_02434 [Clavispora lusitaniae ATCC 42720]
 gi|238848844|gb|EEQ38308.1| hypothetical protein CLUG_02434 [Clavispora lusitaniae ATCC 42720]
          Length = 397

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 77/200 (38%), Gaps = 23/200 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVE----------DVY 572
             +VVSAT     LE       + +       D  +E I+    Q E          D+Y
Sbjct: 200 QVVVVSATLTREVLEITSKFTTDPVKILVKKEDVTLEGIKQYHIQCEKEEWKFDTLCDLY 259

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TK     L + L + N  V  MH ++K  ER  I+ D R G 
Sbjct: 260 DSLTIT-----QAVIFCNTKSKVNWLADQLRKANFAVSSMHGDMKQEERDSIMNDFRTGN 314

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             VL+  ++   G+D+ +  LV   D         K + +  IGR+ R     V +   T
Sbjct: 315 SRVLISTDVWARGIDVQQVSLVINYD-----LPLDKENYVHRIGRSGRFGRKGVAINLIT 369

Query: 693 ITKSIQLAIDETTRRREKQL 712
                +  + +  R  + ++
Sbjct: 370 KDDVAE--MKDLERYYKIRI 387


>gi|225445460|ref|XP_002285108.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 615

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 74/196 (37%), Gaps = 20/196 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVE-IRSARTQ---VE 569
              T++ SAT    E+++     +   I          T L+   VE +     +   ++
Sbjct: 318 ARQTMLFSAT-FPNEIQRLAADFLSNYIFLSVGRVGSSTDLIVQRVEFVEDTDKRYHLMD 376

Query: 570 DVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            +  ++     +     L+ V TKR  + L ++L    +    +H +   +ER   ++  
Sbjct: 377 LLQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERERALKSF 436

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           + G   ++V  ++   GLDIP    V   D  K     +    +  IGR  R   S    
Sbjct: 437 KSGATPIMVATDVAARGLDIPHVAHVINFDLPK-----AIDDYVHRIGRTGRAGKSGLAT 491

Query: 688 LYADTITKSIQLAIDE 703
            + +    S+  ++ E
Sbjct: 492 AFFNDGNLSLAKSLVE 507


>gi|145974737|gb|ABQ00072.1| PL10A [Fenneropenaeus chinensis]
          Length = 660

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 7/136 (5%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +   +    ++ L  L+ V TK+ A+ L E+LY     V  +H +    ER + +R  
Sbjct: 485 EKMAMGVPPRREESL-TLVFVETKKGADALEEFLYRHGYPVTSIHGDRSQREREDALRVF 543

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           R G+  +LV   +   GLDIP    V   D             +  IGR  R  N     
Sbjct: 544 RSGQCPILVATAVAARGLDIPHVKHVINFD-----LPSDIEEYVHRIGRTGRMGNLGLAT 598

Query: 688 LYADTITKSIQLAIDE 703
            + +   +++   + E
Sbjct: 599 SFFNDKNRNMVRDLVE 614


>gi|78779495|ref|YP_397607.1| DEAD/DEAH box helicase-like [Prochlorococcus marinus str. MIT 9312]
 gi|78712994|gb|ABB50171.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str. MIT
           9312]
          Length = 593

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 95/245 (38%), Gaps = 16/245 (6%)

Query: 523 PTTIVVSATPGSWEL----EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
              ++ SAT    E+    ++      E +I+        +  +    Q     D +   
Sbjct: 227 KQMVLFSAT-MPNEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRI 285

Query: 579 AQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +     +++ V TK +   + E L      V  ++ ++   +R   +  L+ G  D+LV
Sbjct: 286 LELNNEGVIIFVRTKLLTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKKGFIDILV 345

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLD+    LV   D     F   K +    IGR  R   S   IL+ +   K 
Sbjct: 346 ATDVAARGLDVERIKLVVNYD-----FPFDKETYTHRIGRTGRAGRSGEAILFVNHREKH 400

Query: 697 IQLAIDETTRRR--EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
               ++ +TR +  E  +  NK   IN + +++ I  V +  L ++    N ++    L 
Sbjct: 401 FLRNLENSTRTKIEEINIPSNKI--INEKRMEKLIENVNESSLAKEDNEENKALIIDVLD 458

Query: 755 LSKKK 759
             K+K
Sbjct: 459 NLKEK 463


>gi|47211987|emb|CAF95263.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 514

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 83/221 (37%), Gaps = 33/221 (14%)

Query: 519 NCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
             +RP   T++ SAT      +  +  + + I    G ++      SA   +  + D   
Sbjct: 234 EQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIQINIGALEL-----SANHNILQIVDVCM 288

Query: 577 LA--------------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
                           A++  + ++ V TK+  +DLT  +         +H +    ER 
Sbjct: 289 ETEKDDKLIQLMEEIMAEKENKTIIFVETKKRCDDLTRRMRRDGWPAMCIHGDKSQPERD 348

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
            ++ + R GK  +L+  ++   GLD+ +   V   D     +  S    +  IGR AR+ 
Sbjct: 349 WVLAEFRSGKAPILIATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARST 403

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           N        T   +++ A      R   ++    +  INP+
Sbjct: 404 NKGTAYTFFTPG-NLRQA------RDLVRVLEEARQAINPK 437


>gi|227822942|ref|YP_002826914.1| dead-box ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
 gi|227341943|gb|ACP26161.1| dead-box ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
          Length = 520

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 74/223 (33%), Gaps = 36/223 (16%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            + + GF      D R  +  +       T++ SAT      E     + + +       
Sbjct: 170 QMLDLGFI----HDLR--KISKLVPKNRQTLLFSATMPKQIAELAGEYLTDPV------- 216

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRI---------------LLTVLTKRMAEDLTE 600
              VE+       + V   ++    + L+                L+   TK  AE L +
Sbjct: 217 --KVEVTPPGKAADKVEQYVHFVPGKDLKTTILKQSLTNNPDGLSLVFSRTKHGAEKLMK 274

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
           +L     +   +H      +R   ++  R G+  VLV  ++   G+DIP    V   D  
Sbjct: 275 HLDHVGFKAASIHGNKSQGQRERALKGFRDGEIRVLVATDVAARGIDIPGVTHVYNYD-- 332

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
                    + +  IGR ARN    + I +       +   I+
Sbjct: 333 ---LPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDIE 372


>gi|319949507|ref|ZP_08023558.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
 gi|319436821|gb|EFV91890.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
          Length = 499

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 18/149 (12%)

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
                 + + R   L  P V  R            I  A  +G   ++   TKR A+ L 
Sbjct: 243 THENTTQHVYRAHSLDKPEVVAR------------ILQAEGRG-ATMIFCRTKRTAQKLA 289

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           + L ER  RV  +H ++    R + ++  R G  DVLV  ++   G+D+ +   V     
Sbjct: 290 DDLAERGFRVGAIHGDLGQGAREKSLKAFRSGDVDVLVATDVAARGIDVDDVTHVINY-- 347

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
                   + + +  IGR  R   + V +
Sbjct: 348 ---QCPEDEKTYVHRIGRTGRAGRTGVAV 373


>gi|261250797|ref|ZP_05943371.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891]
 gi|260937670|gb|EEX93658.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891]
          Length = 660

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQLRM 356

Query: 698 QLAIDETTR 706
              I+  T+
Sbjct: 357 LRTIERVTK 365


>gi|268680741|ref|YP_003305172.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618772|gb|ACZ13137.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 583

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 95/250 (38%), Gaps = 34/250 (13%)

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
            VS TP            +EQ+       +            +D    +  A +   + +
Sbjct: 202 FVSITPKD----HTTNEDIEQLYYVINEYER-----------DDAMIRLLDALEP-EKSI 245

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +   TK+  + L+  L       + +H +++  +R  +I+  R  + ++LV  ++   GL
Sbjct: 246 VFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEILVATDVAARGL 305

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           ++ +   V       +       S +  IGR  R       +   T  +        + +
Sbjct: 306 NVADISHVFNYHMPFD-----PESYVHRIGRTGRAGKKGTAITLVTPIE------FHSMQ 354

Query: 707 RREKQLEHNKKHNINP--QSVKE----KIMEVIDPILLEDAATTNISIDAQQLSLSKKKG 760
           R  K++    +H I P  + VKE    KI + I    L + A+  ++I  +++ +S+   
Sbjct: 355 RIGKKVGSKIEHRIVPNLRDVKENKLIKIADDIKNAELNENASKLLAILEEEMDMSQIAL 414

Query: 761 KAHLKSLRKQ 770
              L +L K+
Sbjct: 415 -KLLSNLLKE 423


>gi|187777742|ref|ZP_02994215.1| hypothetical protein CLOSPO_01334 [Clostridium sporogenes ATCC
           15579]
 gi|187774670|gb|EDU38472.1| hypothetical protein CLOSPO_01334 [Clostridium sporogenes ATCC
           15579]
          Length = 425

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 29/197 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
                ++ SAT    E+ +    IV+  IR        VE+    + V+ +  E+    +
Sbjct: 179 KVRQNLLFSAT-MPSEITKLVDSIVKDPIR--------VEVTPVSSTVDTITQEVYHVRK 229

Query: 581 QGLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +  R               L+   TKR A  + + L E  I    +H       R   + 
Sbjct: 230 KQKRSLLKHLLKDESIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALN 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + + GK  VLV  ++   G+D+ E   V   +           + +  IGR  R     V
Sbjct: 290 NFKEGKIRVLVATDIAARGIDVNELSHVFNYN-----LPDVPETYVHRIGRTGRAGAKGV 344

Query: 687 -ILYADTITKSIQLAID 702
            I + D        AI+
Sbjct: 345 AISFCDIEEIKSLKAIE 361


>gi|154509558|ref|ZP_02045200.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799192|gb|EDN81612.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC
           17982]
          Length = 581

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 16/183 (8%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE-------- 574
            T++ SAT PG       + ++    IR     D    + + +  +  V+          
Sbjct: 248 HTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNKVEVVAR 307

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I  A  +G R ++   TKR A  L E L  R   V  +H ++    R + +R  R GK D
Sbjct: 308 ILQAEGRG-RTVIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQGAREQALRAFRNGKVD 366

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           VLV  ++   G+D+ +   V             +   I  IGR  R  NS   + + D  
Sbjct: 367 VLVATDVAARGIDVDDVTHVINYQC-----PEDEKIYIHRIGRTGRAGNSGTAVTFVDWD 421

Query: 694 TKS 696
              
Sbjct: 422 DTP 424


>gi|240128393|ref|ZP_04741054.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268686791|ref|ZP_06153653.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268627075|gb|EEZ59475.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 462

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 28/189 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQ 581
            T++ SAT             V ++ R        +E+     Q  +E+     +    +
Sbjct: 183 QTLLFSAT---------WDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHK 233

Query: 582 GL------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                         + ++   TK M E + + LYE+      +H ++    R   + DLR
Sbjct: 234 NRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLR 293

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + + 
Sbjct: 294 KGRCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAIT 348

Query: 690 ADTITKSIQ 698
              + + ++
Sbjct: 349 FAEVNEYVK 357


>gi|323693153|ref|ZP_08107371.1| hypothetical protein HMPREF9475_02234 [Clostridium symbiosum
           WAL-14673]
 gi|323502636|gb|EGB18480.1| hypothetical protein HMPREF9475_02234 [Clostridium symbiosum
           WAL-14673]
          Length = 257

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 20/159 (12%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYLYE 604
           VE+    + V+ +   +    ++  R               L+   TK  A+ + ++L +
Sbjct: 19  VEVTPVSSTVDIIDASLYYVDKENKRSLLVYLLNHEDITSTLVFTRTKHGADRVAKFLVK 78

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
             I    +H +     R   +   + G+  VLV  ++   G+DI E   V   D      
Sbjct: 79  NRISAAAIHGDKSQGARQTALSHFKSGEIQVLVATDIAARGIDIEELSCVINFD-----L 133

Query: 665 LRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAID 702
                + I  IGR  R   + + I ++D   K+    I+
Sbjct: 134 PNIPETYIHRIGRTGRAGLDGRAISFSDIEEKAYVKDIE 172


>gi|315612763|ref|ZP_07887674.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
 gi|315314873|gb|EFU62914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
          Length = 525

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   ++  + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVD-QYYIRVKEQEKFDTMTHLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++    +       E  A     +
Sbjct: 349 GYLQIIENLTKKRMKGLKPATAEEAFQAKKQVALKKIERDFADEAIRGNFEKFAKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    S ++   ++ SL  Q
Sbjct: 409 AAEF---SPEELAMYILSLTVQ 427


>gi|240080542|ref|ZP_04725085.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA19]
 gi|240118143|ref|ZP_04732205.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|240123692|ref|ZP_04736648.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|268596673|ref|ZP_06130840.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268603859|ref|ZP_06138026.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682325|ref|ZP_06149187.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268550461|gb|EEZ45480.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268587990|gb|EEZ52666.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268622609|gb|EEZ55009.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
          Length = 462

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 28/189 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQ 581
            T++ SAT             V ++ R        +E+     Q  +E+     +    +
Sbjct: 183 QTLLFSAT---------WDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHK 233

Query: 582 GL------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                         + ++   TK M E + + LYE+      +H ++    R   + DLR
Sbjct: 234 NRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLR 293

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + + 
Sbjct: 294 KGRCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAIT 348

Query: 690 ADTITKSIQ 698
              + + ++
Sbjct: 349 FAEVNEYVK 357


>gi|229820496|ref|YP_002882022.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
 gi|229566409|gb|ACQ80260.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
           12333]
          Length = 589

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 92/252 (36%), Gaps = 25/252 (9%)

Query: 523 PTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSARTQVEDVYDEI 575
               + SAT  P   ++ +      E+I       P   V     I   R + E +   +
Sbjct: 195 KQVALFSATMPPPIRKVAETHLRNPEEIAVARQATPIAAVTQTYAIVPYRNKAEALSRVL 254

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A       ++ V T+  AE++   L  R I    +  +V   ER  I+  LR G  DV
Sbjct: 255 --ATSDADAAIVFVRTRETAEEVGTALASRGINAASISGDVAQRERERIVERLRSGALDV 312

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLD+   GLV   D  +E  + +    I   GRA R  N   + +     K
Sbjct: 313 LVATDVAARGLDVERIGLVVNFDVPRE--VETYVHRIGRTGRAGRTGN--ALTFLTPKEK 368

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
                I+  T  R  +          P +      EV         AT +  + A  +S 
Sbjct: 369 PRLRTIERVTGSRLVEAT-------IPTN-----AEVAAHRTGAALATAHARLGAGDVSA 416

Query: 756 SKKKGKAHLKSL 767
            +++  AH+  L
Sbjct: 417 HRERLVAHVAEL 428


>gi|304315659|ref|YP_003850804.1| DEAD/DEAH box helicase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302777161|gb|ADL67720.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 514

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 97/252 (38%), Gaps = 33/252 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA----- 578
            T++ SAT    E++      ++   +   +V   + + + +    +V ++         
Sbjct: 176 QTMMFSAT-MPDEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRI 234

Query: 579 --AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              ++    ++   TK+  ++LTE +  R   V  MH ++   +RI  +R  + G  D L
Sbjct: 235 LDVEEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGNLDFL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK- 695
           V  ++   G+DI     V   +       +   S +  IGR  R   S V     T  + 
Sbjct: 295 VATDVAARGIDIENLTHVINYN-----LPQDVESYVHRIGRTGRANRSGVAYTLVTSREY 349

Query: 696 -SIQLAIDETT---RRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
            +++    ET    RR+E        Q+++NK        + + I  V++    +     
Sbjct: 350 PALKRIERETKCKIRRKELPTIDDIFQVKYNK--------MIKDIKRVLENDGYKRFVPL 401

Query: 745 NISIDAQQLSLS 756
            + +D +   + 
Sbjct: 402 AMELDEEYNLVD 413


>gi|71030480|ref|XP_764882.1| RNA helicase-1 [Theileria parva strain Muguga]
 gi|68351838|gb|EAN32599.1| RNA helicase-1, putative [Theileria parva]
          Length = 598

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 15/170 (8%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGL-------VDPPVEIRSARTQVEDVYDEI 575
             T++ SAT  S   E  +  +   I+   G+       V   V      +++  +   +
Sbjct: 390 HQTLLFSATIPSKIQEFAKLTLTNPIVVNVGVSGSANKNVKQVVVAVPKESKLPMLLQCL 449

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                    +L+    K   E + EYL  + +    +H  +   ERIE I D +  K DV
Sbjct: 450 KKTPPP---VLIFCENKADVEIINEYLILKGVEASAIHGGLSQEERIESISDFKNHKKDV 506

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           L+G ++  +GLD P    V   D       R   + +  IGR  R     
Sbjct: 507 LIGTDIASKGLDFPSIQHVINFD-----LPRDMENYVHRIGRTGRRGEKG 551


>gi|258617566|gb|ACV83780.1| DEAD box ATP-dependent RNA helicase-like protein [Heliconius
           melpomene]
          Length = 646

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 64/162 (39%), Gaps = 14/162 (8%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           L       ++QII      +  V+       + ++  EI  A+++  ++++ V TK+  +
Sbjct: 446 LNLSANNNIKQIIEVCEEHEKEVK-------LTNLLKEI--ASEKDNKVIVFVETKKKVD 496

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           D+   +     +   +H +    ER  ++ + R G   +L+  ++   GLD+ +   V  
Sbjct: 497 DIARAVRRNGHKALAIHGDKSQQERDAVLTEFRNGATTILIATDVAARGLDVEDVKFVVN 556

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            D     +  +    I  IGR  R   S       T   + Q
Sbjct: 557 FD-----YPNTSEDYIHRIGRTGRCQQSGTAYTYFTSGDARQ 593


>gi|330719371|ref|ZP_08313971.1| superfamily II DNA/RNA helicase [Leuconostoc fallax KCTC 3537]
          Length = 551

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 90/266 (33%), Gaps = 33/266 (12%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +        E I I    L    V+   +R    +  D    I  
Sbjct: 176 QTLLFSATMPPAIKLIGVKFMTNPEHIQIEAKELTTDLVDQYFVRVRENEKFDTMTRIFD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                L  ++   TKR  E+L   L  R      +H ++    R  ++   +  + ++LV
Sbjct: 236 VQAPKL-AIVFGRTKRRVEELARGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS 696
             ++   GLD+ +   V   D       +   S +  IGR  R     V + +       
Sbjct: 295 ATDVAARGLDVKDVSHVYNFD-----IPQDPESYVHRIGRTGRAGAEGVSVTFVAPNEMD 349

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQS--------VKEKIMEVIDPILLEDAATTNISI 748
              A++  T++R   LE        P +        +     EV   I   D +     +
Sbjct: 350 YLRAVENLTKKRMTPLE--------PATLQQARVGKINNAAGEVAKLIQSTDVSEIQDQV 401

Query: 749 DAQQLSLSKKKGKAHL----KSLRKQ 770
           +A     S ++  A L      L KQ
Sbjct: 402 NALTEKYSAEQLAAALLSSVADLEKQ 427


>gi|307352826|ref|YP_003893877.1| DEAD/DEAH box helicase domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307156059|gb|ADN35439.1| DEAD/DEAH box helicase domain protein [Methanoplanus petrolearius
           DSM 11571]
          Length = 536

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 97/255 (38%), Gaps = 28/255 (10%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            TI+ SAT P    ++ +      E + I P  L  P +E +    + +D  + +     
Sbjct: 181 QTILFSATMPKPILKISKSFQKKPEFVTINPGQLTVPLIEQKYLEVREKDKLEVLCRLID 240

Query: 581 QGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                  ++   TK+  ++L+E L  R      +H ++K  +R  ++   R G  D+L+ 
Sbjct: 241 INSSDLSMIFCNTKKAVDELSEMLRSRGYFAEGLHGDMKQQQRDRVMSRFRSGSIDILIA 300

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   G+DI +  +V   D       +     I  IGR  R   S +     +  +  +
Sbjct: 301 TDVAARGIDIDDIDVVYNYDV-----PQDVEYYIHRIGRTGRAGKSGMSYTFVSPKEIYK 355

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
           L       R  K++    K NI        +   I      + +     +D  +  ++++
Sbjct: 356 L-------RMIKKIA---KVNI--------VRIAIPNAADVENSRIEKVLDRVKSIINEE 397

Query: 759 KGKAHLKSLRKQMHL 773
               ++ ++ + M  
Sbjct: 398 DIGLYIPAVERLMEE 412


>gi|156554399|ref|XP_001604593.1| PREDICTED: similar to DEAD box polypeptide 5 [Nasonia vitripennis]
          Length = 551

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 14/160 (8%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
            T++  +  EI      G + ++ V TK+  E++T  +         MH +    ER  +
Sbjct: 357 ETKLGTLLQEIGNVNDDGGKTIIFVETKKKVENITRNIRRYGWPAVCMHGDKSQQERDYV 416

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R  K  +LV  ++   GLD+ +   V   D     +  S    I  IGR  R+ +S
Sbjct: 417 LREFRNKKGSILVATDVAARGLDVDDVRYVINFD-----YPSSSEDYIHRIGRTGRSQSS 471

Query: 685 KVILYADTITKSIQLAIDETTRRREK-QLEHNKKHNINPQ 723
               YA    ++ + A D     RE  Q+       INP+
Sbjct: 472 GT-SYAFFTPQNGRQAKDLINVLREANQI-------INPK 503


>gi|119963381|ref|YP_948725.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
 gi|119950240|gb|ABM09151.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
          Length = 726

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 8/184 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ++  V TK   EDL + L  R  +   ++ ++   +R   +  L+ G+ D+LV  ++   
Sbjct: 319 VIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAAR 378

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     K +  +I++
Sbjct: 379 GLDVERISHVINYD-----IPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRSIEK 433

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN--ISIDAQQLSLSKKKGK 761
            TR+  +Q+       +N   + +    + + +  ED A     IS   ++ ++   +  
Sbjct: 434 ATRQPVEQMHLPTAETVNTLRLGKFAERITETLESEDVAAFRDLISSYEEEHNVPASEIA 493

Query: 762 AHLK 765
           A L 
Sbjct: 494 AALA 497


>gi|240013980|ref|ZP_04720893.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18]
 gi|240121547|ref|ZP_04734509.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1]
          Length = 462

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 69/189 (36%), Gaps = 28/189 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQ 581
            T++ SAT             V ++ R        +E+     Q  +E+     +    +
Sbjct: 183 QTLLFSAT---------WDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHK 233

Query: 582 GL------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                         + ++   TK M E + + LYE+      +H ++    R   + DLR
Sbjct: 234 NRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLR 293

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+  +LV  ++   G+DIP    V   D  K+         +  IGR  R   + + + 
Sbjct: 294 KGRCKILVATDVAARGIDIPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAIT 348

Query: 690 ADTITKSIQ 698
              + + ++
Sbjct: 349 FAEVNEYVK 357


>gi|55823472|ref|YP_141913.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|55739457|gb|AAV63098.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 528

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 100/261 (38%), Gaps = 23/261 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
            T++ SAT     +++     ++      I+   L +  V+    R + ++ +D +    
Sbjct: 176 QTLLFSAT-MPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLM 234

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ IIRD + G+ D+LV
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +  
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMG 349

Query: 698 QLAIDET-TRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
            L I E  T++R K       Q     K  +  + ++    +  D  +  +         
Sbjct: 350 YLGIIENLTKKRMKGLKPPTAQEAFQSKKKVALKKIER---DFADEAIHANFDKFKDDAV 406

Query: 750 AQQLSLSKKKGKAHLKSLRKQ 770
                 + ++   ++ SL  Q
Sbjct: 407 KLAQEFTPEELALYILSLTVQ 427


>gi|1054723|emb|CAA31405.1| vasa [Drosophila melanogaster]
          Length = 661

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 83/254 (32%), Gaps = 32/254 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++        VD + +T      +   +  R     + GF      D R +   
Sbjct: 375 TPGRLLDF--------VDRTFITFEDTRFVVLDEADRM---LDMGF----SEDMRRIMTH 419

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV--------DPPVEIRSARTQV 568
                   T++ SAT            +   +    G+V            E+     + 
Sbjct: 420 VTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVSVAIGIVGGACSDVKQTIYEVNKYAKRS 479

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +     I + ++Q    ++ V TKR A+ L  +L E+      +H +    +R + +RD 
Sbjct: 480 K----LIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDF 535

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G   VL+  ++   GLDI     V   D             +  IGR     N+    
Sbjct: 536 KNGSMKVLIATSVASRGLDIKNIKHVINYD-----MPSKIDDYVHRIGRTGCVGNNGRAT 590

Query: 689 YADTITKSIQLAID 702
                 K   +A D
Sbjct: 591 SFFDPEKDRAIAAD 604


>gi|240016422|ref|ZP_04722962.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140]
          Length = 462

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 28/189 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQ 581
            T++ SAT             V ++ R        +E+     Q  +E+     +    +
Sbjct: 183 QTLLFSAT---------WDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHK 233

Query: 582 GL------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                         + ++   TK M E + + LYE+      +H ++    R   + DLR
Sbjct: 234 NRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLR 293

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + + 
Sbjct: 294 KGRCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAIT 348

Query: 690 ADTITKSIQ 698
              + + ++
Sbjct: 349 FAEVNEYVK 357


>gi|225677315|ref|ZP_03788292.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590642|gb|EEH11892.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 402

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 74/180 (41%), Gaps = 11/180 (6%)

Query: 521 LRPTTIVVSAT-PGSW-ELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEI 575
               T++ SAT PG   +L +      E+I      T  V    EI    ++ E     +
Sbjct: 169 KIRQTLMFSATLPGDIVKLAEKYLNRPERISVDCEATTSVKIKQEIV-YASESEKYEKLV 227

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               Q+   I++ V TKR A+ L   L++ +     +H +++  +R  +I   R G+  +
Sbjct: 228 TQLCQREGSIIIFVKTKRGADQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQI 287

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +V  ++   GLDIP    V   DA      +S+   I  IGR AR       L   T   
Sbjct: 288 MVATDVASRGLDIPHIQHVINYDA-----PQSQADYIHRIGRTARAGAEGYALSFVTPQD 342


>gi|281415806|ref|ZP_06247548.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
          Length = 597

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 15/176 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------EDVY 572
              T++ SAT PG       + +     IR     D  +  +  R  V        +++ 
Sbjct: 223 VRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMDKDELV 282

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                A  +G R ++   TKR A  + + L  R      +H ++    R + +R  R GK
Sbjct: 283 ARALQAEGRG-RTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAFRNGK 341

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            D+LV  ++   G+D+ +   V    A        + + +  +GR  R  N  V +
Sbjct: 342 VDILVATDVAARGIDVDDVTHVFNFQA-----PEDEKTYVHRVGRTGRAGNKGVAV 392


>gi|240115845|ref|ZP_04729907.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|260440339|ref|ZP_05794155.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI2]
 gi|268601522|ref|ZP_06135689.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291043632|ref|ZP_06569348.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|268585653|gb|EEZ50329.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291012095|gb|EFE04084.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 462

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 28/189 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQ 581
            T++ SAT             V ++ R        +E+     Q  +E+     +    +
Sbjct: 183 QTLLFSAT---------WDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHK 233

Query: 582 GL------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                         + ++   TK M E + + LYE+      +H ++    R   + DLR
Sbjct: 234 NRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLR 293

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + + 
Sbjct: 294 KGRCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAIT 348

Query: 690 ADTITKSIQ 698
              + + ++
Sbjct: 349 FAEVNEYVK 357


>gi|162459683|ref|NP_001105241.1| DEAD box RNA helicase1 [Zea mays]
 gi|39653663|gb|AAR29370.1| DEAD box RNA helicase [Zea mays]
          Length = 566

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSAT-PGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E           + II    ++    +   VE+ S    ++D    +
Sbjct: 330 QTLYWSATWPREVEALARQFLQNPYKVIIGSPELKANHSIQQIVEVISDHESIQDSVKLL 389

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +     G RIL+ + TK+  + +T  L         +H +    ER  ++ + + GK  +
Sbjct: 390 SDLMD-GSRILIFLQTKKDCDKITRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPI 448

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  +    I  IGR  R   S       T   
Sbjct: 449 MAATDVAARGLDVKDIKCVINYD-----FPTTLEDYIHRIGRTGRAGASGTAFTFFTHAN 503

Query: 696 S 696
           +
Sbjct: 504 A 504


>gi|21355075|ref|NP_649767.1| CG7878 [Drosophila melanogaster]
 gi|7298989|gb|AAF54192.1| CG7878 [Drosophila melanogaster]
 gi|15291973|gb|AAK93255.1| LD33749p [Drosophila melanogaster]
 gi|220946004|gb|ACL85545.1| CG7878-PA [synthetic construct]
 gi|220955750|gb|ACL90418.1| CG7878-PA [synthetic construct]
          Length = 703

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 75/206 (36%), Gaps = 15/206 (7%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            TI+ SAT  PG   L Q       Q+      +  T  V   +++        +     
Sbjct: 463 QTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSF 522

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   +I++    K  A+DL+  L       + +H     ++R + I D++ G   +
Sbjct: 523 VKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRI 582

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLDI +   V   D     F  +    +  +GR  R       I +     
Sbjct: 583 LVATDVASRGLDIEDITHVINYD-----FPHNIEEYVHRVGRTGRAGRQGTSISFFTRED 637

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNI 720
            ++   + E  +  E Q   ++ HN+
Sbjct: 638 WAMAKELIEILQEAE-QEVPDELHNM 662


>gi|89072528|ref|ZP_01159100.1| putative ATP-dependent RNA helicase SrmB [Photobacterium sp. SKA34]
 gi|89051632|gb|EAR57085.1| putative ATP-dependent RNA helicase SrmB [Photobacterium sp. SKA34]
          Length = 412

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 80/218 (36%), Gaps = 33/218 (15%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI--------RSARTQVEDVYD 573
           R  +++ SAT     LE        + I     ++ PVE+        R    Q+    D
Sbjct: 179 RRQSLLFSAT-----LEGKGVREFSETI-----LNEPVEVNADPSRRERKKIHQMYLRCD 228

Query: 574 EINLA--------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            ++           +Q  R ++ V T+     L   L    I   ++  E+    R  +I
Sbjct: 229 NMDHKLALLENIIKEQAERTIIFVKTRERLGILRGQLEAMGIPCNWIQGEMAQAARTNMI 288

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R G  +VL+  ++   G+D+P+   V   D       R+    +  IGR AR     
Sbjct: 289 TRFRDGVVNVLIATDVAARGIDLPDVSHVINFD-----LPRTAEVYVHRIGRTARAGKKG 343

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
             +         Q  I+  +R  +++++    H + PQ
Sbjct: 344 TAISLVEAHD--QNMIERISRYMKEEVQERFIHGLRPQ 379


>gi|118579798|ref|YP_901048.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118502508|gb|ABK98990.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 475

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 92/255 (36%), Gaps = 30/255 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL--R 514
            P  L +Y+ +           ++ QI  +   +  R     + GF      D R +  R
Sbjct: 131 TPGRLIDYLKQKVY--------SLKQIEMLVIDEADRMF---DMGFI----ADLRFILRR 175

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGII--VEQI-IRPTGLVDPPVEIRSARTQVEDV 571
              ++      ++ SAT     +E     +   E++ + P  +    VE        ++ 
Sbjct: 176 LPPFDKR--QNLMFSATLNQRVMELAYEFMNMPEKVSVTPEKMTAENVEQVIYHASRKEK 233

Query: 572 YDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           +  +    ++    R ++ + TKR  E L + L       R +  +V   +R+ I+   +
Sbjct: 234 FPLLLGLLRRDGMERTMIFINTKREGEYLHDRLNANGFPCRLISGDVDQKKRLRILEQFK 293

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVIL 688
            G+  +L+  ++   GL I     V   D       +     +  IGR AR     K I 
Sbjct: 294 SGELPILIATDVASRGLHIDGVTHVVNYD-----LPQDCEDYVHRIGRTARAGAQGKAIS 348

Query: 689 YADTITKSIQLAIDE 703
            AD        AI+E
Sbjct: 349 LADEDGALYLEAIEE 363


>gi|317485703|ref|ZP_07944574.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
 gi|316923068|gb|EFV44283.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
          Length = 594

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 86/226 (38%), Gaps = 24/226 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS-WELEQCQGIIVEQIIRPTGL 554
            + + GFR     ++  L  E+        +  +  P    EL +      E +     +
Sbjct: 156 EMLDMGFR-----EDIELILEQSPADCQRVLFSATMPQPIRELSKRFLREPEMLTIAHKM 210

Query: 555 VDPPV------EIRSARTQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNI 607
           +  P       E+R  + +++ +   ++    QG R  L+   TKR  +++T +L +R  
Sbjct: 211 LTVPAIEQVYYEVRPYQ-KMDALCRVLD---SQGFRKALVFCATKRSVDEITVHLQQRGY 266

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +   +H ++   +R  ++   R    ++LV  ++   G+D+ +   V   D         
Sbjct: 267 QADGLHGDMNQTQRDRVMSRFRTDGIEILVATDVAARGIDVDDVDAVINYD-----IPHD 321

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
               +  IGR  R           T+ +  +  I E  R  + +++
Sbjct: 322 VEGYVHRIGRTGRAGREGKAFTFVTVREQYK--IREIIRYTKARIQ 365


>gi|160380611|sp|A6ZRX0|DBP2_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP2; AltName: Full=DEAD
           box protein 2; AltName: Full=p68-like protein
 gi|151944424|gb|EDN62702.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|190409099|gb|EDV12364.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|259149249|emb|CAY82491.1| Dbp2p [Saccharomyces cerevisiae EC1118]
          Length = 546

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 81/211 (38%), Gaps = 25/211 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E++Q     +   I+          +  +   VE+ S   + + +   
Sbjct: 293 QTLMWSAT-WPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKY 351

Query: 575 INLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +  A+Q    + L+   TKRM +D+T+YL E       +H +    ER  ++++ R G+ 
Sbjct: 352 LETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRS 411

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
            ++V  ++   G+D+     V   D        +    +  IGR  R   +   I +   
Sbjct: 412 PIMVATDVAARGIDVKGINYVINYD-----MPGNIEDYVHRIGRTGRAGATGTAISFFTE 466

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
             K +          +   +      NI P+
Sbjct: 467 QNKGLGA--------KLISIMREANQNIPPE 489


>gi|3646126|emb|CAA09374.1| ATP-dependent RNA helicase [Homo sapiens]
          Length = 420

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 224 VRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 283

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K I +  
Sbjct: 284 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITFFT 338

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 339 EDDKPLLRSV 348


>gi|296184919|ref|ZP_06853330.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
 gi|296050701|gb|EFG90124.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
          Length = 374

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 76/199 (38%), Gaps = 13/199 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA----- 578
            T++ SAT    E+ +     ++  ++   +V   + +   +    +V  +         
Sbjct: 178 QTLLFSAT-MPKEIAKLASKYMKNEVKHIKIVKNSLTVEKIKQYYYEVKHKDRFESLCRI 236

Query: 579 --AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               +    ++   TKR  ++L E +  R   V  MH ++   +R+  +R  + G  D L
Sbjct: 237 LDIDEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGTLDFL 296

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+D+ +   V   D       +   S +  IGR  R     +     T  + 
Sbjct: 297 VATDVAARGIDVDDVSHVINYD-----LPQDMESYVHRIGRTGRANKEGIAYSLVTPREY 351

Query: 697 IQLAIDETTRRREKQLEHN 715
           I +   E   +R+ + + N
Sbjct: 352 IMIKQLEKFTKRQNKEKRN 370


>gi|255013264|ref|ZP_05285390.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_7]
          Length = 426

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 29/194 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       E I++   +   P +++  +     
Sbjct: 183 QTIMFSATMPPKIRTLAKTILKDPEEVKIAISRPPESIMQTAYICYDPQKLKILQD---- 238

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                     +  R+++   +K   ++L   L      V  MHS+++  +R E++++ + 
Sbjct: 239 -----LFTQSRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKS 293

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR--NVNSKVIL 688
           G  D+LV  +++  G+DI +  LV   D             +  IGR AR  N     I 
Sbjct: 294 GHIDILVATDVVARGIDINDIKLVVNFD-----IPHDPEDYVHRIGRTARGTNGEGLAIT 348

Query: 689 YADTITKSIQLAID 702
           +     ++    I+
Sbjct: 349 FVSIDEQAQFKRIE 362


>gi|221123568|ref|XP_002167666.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Hydra magnipapillata]
          Length = 635

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 101/281 (35%), Gaps = 49/281 (17%)

Query: 440 QSIENYSRYLTGRNPGEPPPTLFEYIPEDS-------LLFVDESHVTIPQISGMYRGDFH 492
           Q + N   +L G      P  + ++I +          + +DE+   +        G   
Sbjct: 168 QELRNGIDFLVG-----TPGRILDHINKGRLDVSKLQYVILDEADRMMD------MGFQE 216

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII------VE 546
               +  Y +                   +P T++ SAT  +W  +  +  +       +
Sbjct: 217 SMEEILSYAYT---------------EDNKPQTLLFSATVPAWLQKNSEKYLTKNLKKFD 261

Query: 547 QIIRPTGLVDPPVEIRSARTQVED----VYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
            I R        VE ++ +    D    + D I   + +  + ++   TK+ A +L    
Sbjct: 262 LIGRDKNKGATTVEHKAIKCTYWDRPSTIKDIIQQYSGKFGKTIIFTSTKQEANELA-LN 320

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
              N+  + +H +++  +R   ++  R GKF+ L+  ++   GLDIPE  LV   +  K+
Sbjct: 321 SVINMDSQVLHGDIQQKQRELTLQSFRNGKFNCLIATDVAARGLDIPEVDLVIQTEPPKD 380

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
                  S I   GR  R     V +      +   +A  E
Sbjct: 381 V-----DSYIHRAGRTGRAGRKGVCIIFYKPGQEYGVAAVE 416


>gi|189465693|ref|ZP_03014478.1| hypothetical protein BACINT_02054 [Bacteroides intestinalis DSM
           17393]
 gi|189433957|gb|EDV02942.1| hypothetical protein BACINT_02054 [Bacteroides intestinalis DSM
           17393]
          Length = 428

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 89/222 (40%), Gaps = 37/222 (16%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       E+I++   +            Q + 
Sbjct: 182 QTIMFSATMPAKIQQLANTILNNPAEVKLAVSRPAEKIVQAAYVC--------YENQ-KL 232

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                  A Q   R+++   +K   +++T+ L    + V  MHS+++  +R E++ + + 
Sbjct: 233 GIIRSLFAEQTPERVIIFASSKLKVKEVTKALKMMKLNVGEMHSDLEQAQREEVMHEFKA 292

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+ ++LV  +++  G+DI +  LV   D             +  IGR AR  N  V L  
Sbjct: 293 GRVNILVATDIVARGIDIDDIRLVINYDV-----PHDSEDYVHRIGRTARANNDGVALTF 347

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
                     I+E  +   KQ+E+  +  I   +V E++ E 
Sbjct: 348 ----------INEKEQSNFKQIENFLEKEIYKIAVPEELGEA 379


>gi|153840451|ref|ZP_01993118.1| cold-shock deAd box protein a [Vibrio parahaemolyticus AQ3810]
 gi|149745886|gb|EDM57016.1| cold-shock deAd box protein a [Vibrio parahaemolyticus AQ3810]
          Length = 473

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 24/192 (12%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 72  TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 131

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 132 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQIRM 186

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-DPILLEDAATTNISIDAQQLSLS 756
              I+  T                 +S  E+I   + D +           ++A++   +
Sbjct: 187 LRTIERVT-----------------KSSMEEIQLPLRDQVAEARLNKLAAELEAEKEHKA 229

Query: 757 KKKGKAHLKSLR 768
             K    ++ L+
Sbjct: 230 LDKFAELVEKLQ 241


>gi|148378643|ref|YP_001253184.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
           3502]
 gi|153933936|ref|YP_001383027.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
           19397]
 gi|153937665|ref|YP_001386574.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. Hall]
 gi|148288127|emb|CAL82195.1| putative ATP-dependent RNA helicase rhle [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929980|gb|ABS35480.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
           19397]
 gi|152933579|gb|ABS39078.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. Hall]
          Length = 425

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 29/197 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
                ++ SAT    E+ +    IV+  IR        VE+    + V+ +  E+    +
Sbjct: 179 KARQNLLFSAT-MPSEITKLVDSIVKDPIR--------VEVTPVSSTVDTITQEVYHVRK 229

Query: 581 QGLRIL--------------LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +  R L              +   TKR A  + + L E  I    +H       R   + 
Sbjct: 230 KQKRALLKHLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALN 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + + GK  VLV  ++   G+D+ E   V   +           + +  IGR  R     V
Sbjct: 290 NFKEGKIRVLVATDIAARGIDVNELSHVFNYN-----LPDIPETYVHRIGRTGRAGAKGV 344

Query: 687 -ILYADTITKSIQLAID 702
            I + D        AI+
Sbjct: 345 AISFCDIEETKSLKAIE 361


>gi|59801077|ref|YP_207789.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|194098823|ref|YP_002001886.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239999112|ref|ZP_04719036.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae 35/02]
 gi|240113089|ref|ZP_04727579.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|240125882|ref|ZP_04738768.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254493889|ref|ZP_05107060.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268594948|ref|ZP_06129115.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268599176|ref|ZP_06133343.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268684482|ref|ZP_06151344.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|293398939|ref|ZP_06643104.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|59717972|gb|AAW89377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|193934113|gb|ACF29937.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512929|gb|EEH62274.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548337|gb|EEZ43755.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268583307|gb|EEZ47983.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268624766|gb|EEZ57166.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|291610353|gb|EFF39463.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|317164404|gb|ADV07945.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 462

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 28/189 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQ 581
            T++ SAT             V ++ R        +E+     Q  +E+     +    +
Sbjct: 183 QTLLFSAT---------WDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHK 233

Query: 582 GL------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                         + ++   TK M E + + LYE+      +H ++    R   + DLR
Sbjct: 234 NRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLR 293

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + + 
Sbjct: 294 KGRCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAIT 348

Query: 690 ADTITKSIQ 698
              + + ++
Sbjct: 349 FAEVNEYVK 357


>gi|42521033|ref|NP_966948.1| DEAD-box ATP dependent DNA helicase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410774|gb|AAS14882.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 408

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 74/180 (41%), Gaps = 11/180 (6%)

Query: 521 LRPTTIVVSAT-PGSW-ELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEI 575
               T++ SAT PG   +L +      E+I      T  V    EI    ++ E     +
Sbjct: 175 KIRQTLMFSATLPGDIVKLAEKYLNRPERISVDCEATTSVKIKQEIV-YASESEKYEKLV 233

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               Q+   I++ V TKR A+ L   L++ +     +H +++  +R  +I   R G+  +
Sbjct: 234 TQLCQREGSIIIFVKTKRGADQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQI 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +V  ++   GLDIP    V   DA      +S+   I  IGR AR       L   T   
Sbjct: 294 MVATDVASRGLDIPHIQHVINYDA-----PQSQADYIHRIGRTARAGAEGYALSFVTPQD 348


>gi|46108284|ref|XP_381200.1| hypothetical protein FG01024.1 [Gibberella zeae PH-1]
 gi|91207410|sp|Q4IP34|PRP5_GIBZE RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
          Length = 1227

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 18/197 (9%)

Query: 512 PLRFEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPT--------GLVDPPVEI 561
           P   + +  +RP   TI+ SAT     ++     +++  I  T          ++  VE+
Sbjct: 766 PQVMKIFANMRPDRQTILFSAT-MPRIIDSLTKKVLKNPIEVTVGGRSVVAKEIEQIVEV 824

Query: 562 RSARTQVEDVYDEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           R   ++   V + +     +    R L+ V  +  A+DL + L  +      +H     +
Sbjct: 825 RDEPSKFHRVLELLGELYDRDEDARTLIFVERQEKADDLLKELMMKGYPCMSIHGGKDQI 884

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R   I D + G   +L+  ++   GLD+ +  LV   DA            +   GR  
Sbjct: 885 DRDSTISDFKKGVVPILIATSVAARGLDVKQLKLVINYDA-----PNHLEDYVHRAGRTG 939

Query: 680 RNVNSKVILYADTITKS 696
           R  N+ V +   T  + 
Sbjct: 940 RAGNTGVAVTFVTPEQE 956


>gi|327279490|ref|XP_003224489.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Anolis
           carolinensis]
          Length = 600

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 78/214 (36%), Gaps = 31/214 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA----- 578
            T++ SAT      +  +  + E +    G ++      SA   +  + D  +       
Sbjct: 270 QTLMWSATWPKEVRQLAEDFLKEYVHINIGALEL-----SANHNILQIVDVCHDVEKDDK 324

Query: 579 ---------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                    +++  + ++ V TKR  +DLT  +         +H +    ER  ++ + +
Sbjct: 325 LIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 384

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GK  +L+  ++   GLD+ +   V   D     +  S    I  IGR AR+  +     
Sbjct: 385 HGKAPILIATDVASRGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKTGTAYT 439

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
             T   +I+   D         +       INP+
Sbjct: 440 FFTPN-NIKQVSD------LISVLREANQAINPK 466


>gi|311740664|ref|ZP_07714491.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304184|gb|EFQ80260.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 619

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++   TK   E++ E L +R      ++ ++   +R   +  L+ G+ D+LV  ++   
Sbjct: 297 IIVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAAR 356

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     + +  +I+ 
Sbjct: 357 GLDVERITHVVNFD-----IPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIER 411

Query: 704 -TTRRRE 709
            T  R E
Sbjct: 412 VTNARLE 418


>gi|331266806|ref|YP_004326436.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
 gi|326683478|emb|CBZ01096.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
          Length = 525

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 76/200 (38%), Gaps = 16/200 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV 
Sbjct: 236 VEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R   S   I +        
Sbjct: 296 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGY 350

Query: 698 QLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
              I+  T++R K       +     K  +  + ++    +       E  A     + A
Sbjct: 351 LQIIENLTKKRMKGLKPATAEEAFQAKKQVALKKIERDFADEAIRGNFEKFAKDARKLAA 410

Query: 751 QQLSLSKKKGKAHLKSLRKQ 770
           +    S ++   ++ SL  Q
Sbjct: 411 EF---SPEELAMYILSLTVQ 427


>gi|262283179|ref|ZP_06060946.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
 gi|262261431|gb|EEY80130.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
          Length = 523

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVD-QYYIRVKENEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    S ++   ++ SL  Q
Sbjct: 409 AAEF---SPEELAMYILSLTVQ 427


>gi|325964224|ref|YP_004242130.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470311|gb|ADX73996.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 710

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 76/184 (41%), Gaps = 8/184 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ++  V TK   EDL + L  R  +   ++ ++   +R   +  L+ G+ D+LV  ++   
Sbjct: 315 VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAAR 374

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     K +  +I++
Sbjct: 375 GLDVERISHVINYD-----IPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRSIEK 429

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN--ISIDAQQLSLSKKKGK 761
            TR+  +Q+       +N   + +    + + +  ED A     I+   ++ ++   +  
Sbjct: 430 ATRQPVEQMHLPTAETVNTLRLGKFAERITETLASEDVAPFRDLIASYEEEHNVPASEIA 489

Query: 762 AHLK 765
           A L 
Sbjct: 490 AALA 493


>gi|294940572|ref|XP_002782818.1| helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239894861|gb|EER14614.1| helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 167

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G RI++   TK+ A+ LT  +   N     +H + +  ER  I+ D + G+ +VLV  +
Sbjct: 3   KGSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILNDFKTGRCNVLVATD 62

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT-KSIQL 699
           + + GLDI     V   D  K   +      I   GRA    NS   +  DT T   +++
Sbjct: 63  VAQRGLDIKNVEWVVNYDMPKT--IEDYVHRIGRTGRAGAVGNSLTFITNDTHTPDRVRM 120

Query: 700 AID 702
           A D
Sbjct: 121 AKD 123


>gi|170759986|ref|YP_001785987.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406975|gb|ACA55386.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 425

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 29/197 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
                ++ SAT    E+ +    IV+  IR        VE+    + V+ +  E+    +
Sbjct: 179 KARQNLLFSAT-MPSEITKLVDSIVKDPIR--------VEVTPVSSTVDTITQEVYHVRK 229

Query: 581 QGLRIL--------------LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +  R L              +   TKR A  + + L E  I    +H       R   + 
Sbjct: 230 KQKRALLKHLLKDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALN 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + + GK  VLV  ++   G+D+ E   V   +           + +  IGR  R     V
Sbjct: 290 NFKEGKIRVLVATDIAARGIDVNELSHVFNYN-----LPDIPETYVHRIGRTGRAGAKGV 344

Query: 687 -ILYADTITKSIQLAID 702
            I + D        AI+
Sbjct: 345 AISFCDIEETKSLKAIE 361


>gi|18310378|ref|NP_562312.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens str. 13]
 gi|110801126|ref|YP_696091.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens ATCC
           13124]
 gi|110803627|ref|YP_698708.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens SM101]
 gi|18145058|dbj|BAB81102.1| ATP-dependent RNA helicase [Clostridium perfringens str. 13]
 gi|110675773|gb|ABG84760.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens ATCC 13124]
 gi|110684128|gb|ABG87498.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens SM101]
          Length = 528

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 77/208 (37%), Gaps = 21/208 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
            T++ SAT      +  +  + E      I+ + L    +E      +  D ++ +    
Sbjct: 181 QTLLFSATMPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVL 240

Query: 580 QQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                   ++   TK+  +++ E +  R   V  MH ++    R++ +R  + G  D LV
Sbjct: 241 DFDEPNAAIIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFLV 300

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   G+D+     V   D       +   S +  IGR  R     V     T  + +
Sbjct: 301 ATDVAARGIDVESVTHVINYD-----LPQDNESYVHRIGRTGRANREGVAYSLVTPKEYM 355

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSV 725
            L          KQ++ + K  I  ++V
Sbjct: 356 ML----------KQIQKHTKSKIIRKAV 373


>gi|195614644|gb|ACG29152.1| ATP-dependent RNA helicase DDX41 [Zea mays]
          Length = 618

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      D+    F+ +   R  T++ SAT         +  +V+ +    G  
Sbjct: 340 RLVDLGFE-----DDIKEVFDHFKDQR-QTLLFSATMPQKIQNFAKNALVKPVTVNVGRA 393

Query: 555 ----VDPPVEIRSARTQVED--VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
               +D   E+   +   ED  +   +    +    +L+    K   + + EYL  + + 
Sbjct: 394 GAANLDVIQEVEYVK---EDARIIYLLECLQKTPPPVLIFCENKADVDYIHEYLLLKGVE 450

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H      ER   I   + G+ DVLV  ++  +GLD P+   V   D   E  + + 
Sbjct: 451 AVAIHGGKDQEERQNAIDSFKTGRKDVLVATDVASKGLDFPDIQHVINYDMPAE--IENY 508

Query: 669 TSLIQTIGRAARNVNSKVI---LYADTITKSIQLAIDETTRR 707
              I   GR  +   +         +T    ++  + E  +R
Sbjct: 509 VHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLKEAKQR 550


>gi|289619969|emb|CBI53413.1| unnamed protein product [Sordaria macrospora]
          Length = 602

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 78/211 (36%), Gaps = 23/211 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVY--- 572
            T++ SAT            +   I    G +D          VE+ S   + + +    
Sbjct: 351 QTLMWSATWPKEVRNLASDFLTNFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIKHL 410

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I    +   +IL+   TKR+A+D+T +L +       +H + +  ER  ++   + GK
Sbjct: 411 EKIMEGRENTNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGK 470

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             ++V  ++   G+D+     V   D     +  +    I  IGR  R       +   T
Sbjct: 471 SPIMVATDVASRGIDVRNITHVLNYD-----YPNNSEDYIHRIGRTGRAGAKGTAITFFT 525

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
              S Q        R    +    K  I+P+
Sbjct: 526 TDNSKQA-------RELVGVLQEAKQQIDPR 549


>gi|119773945|ref|YP_926685.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           amazonensis SB2B]
 gi|119766445|gb|ABL99015.1| DEAD/DEAH box helicase domain protein [Shewanella amazonensis SB2B]
          Length = 432

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 10/182 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVEDVYDEINLA 578
            T++ SAT      +    I+ +  +      +         +     + +       + 
Sbjct: 181 QTLMFSATFSGGVRKLADEIMKKHTVLTADRHNTAATTVSQVVYPVEQRRKRELLSELIG 240

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +   R+L+   T+   E LTE L    I    +HSE     R   ++D   GK  VLV 
Sbjct: 241 RKNWQRVLVFSATREDCEKLTEELNLDGIPSAVIHSEKAQGTRRRALKDFTEGKIRVLVS 300

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             +   GLDIP+   V   D     FL      +  +GR  R   S V +   +  +   
Sbjct: 301 TEVAARGLDIPDLEYVVNFDLP---FLP--EDYVHRVGRTGRAGKSGVAISFVSREEERT 355

Query: 699 LA 700
           LA
Sbjct: 356 LA 357


>gi|312376439|gb|EFR23520.1| hypothetical protein AND_12717 [Anopheles darlingi]
          Length = 696

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 17/174 (9%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ + TK+  +D+T  +       R +H +    ER   ++  R G+  +L+ 
Sbjct: 340 AEKECKTIIFIETKKRVDDITRKVKRDGWPARCIHGDKSQNERDSTLKSFRSGRTPILIA 399

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     F  +    I  IGR  R  N+       T   + +
Sbjct: 400 TDVAARGLDVDDVKFVINFD-----FPTTSEDYIHRIGRTGRCDNTGTAYTFFTPNNAAK 454

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSV-----KEKIMEVIDPILLEDAATTNIS 747
                   R    +    K  INP+ V     K K  ++     +ED +  +++
Sbjct: 455 A-------RDLIDVLKEAKQVINPKLVELANMKVKARDLDRQSRVEDGSPIDVA 501


>gi|225434327|ref|XP_002266157.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297745752|emb|CBI15808.3| unnamed protein product [Vitis vinifera]
          Length = 568

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 60/318 (18%), Positives = 115/318 (36%), Gaps = 55/318 (17%)

Query: 466 PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR--LPSCMDNRPLRFEEWNCLRP 523
           P   +  + E + ++ +IS +   +  R     + GF   +   M N P +         
Sbjct: 255 PGRFIHHLQEGNTSLSRISFVVLDEADRM---LDMGFEPQIREVMQNLPQK--------H 303

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   E      L     + V ++  PT  V   +E  S   +++ +   + 
Sbjct: 304 QTLLFSATMPMEIETLAQEYLNNPVQVKVGKVSCPTANVSQILEKVSESEKIDGLLALLV 363

Query: 577 LAAQQGLR-------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
             A Q  R        ++ V  K   +++ E L  + +R   +H      ER   +RD R
Sbjct: 364 EEASQAERCGRPFPLTIVFVERKTRCDEVAEALVAQGLRAVALHGGRSQAEREAALRDFR 423

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G  ++LV  ++   GLD+     V  LD  K     +  + +  IGR  R  ++     
Sbjct: 424 NGATNILVATDVASRGLDVTGVAHVINLDLPK-----AMENYVHRIGRTGRAGSTGQATS 478

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
             T      +A                 H      +++ I +V     +  A        
Sbjct: 479 FYTDRDVFLVA-----------------H------IRKAIADVGSGNTVAFATGKVARKK 515

Query: 750 AQQLSLSKKKGKAHLKSL 767
            ++ + ++K+ +  L +L
Sbjct: 516 EREAAAAQKEARIALSNL 533


>gi|156087226|ref|XP_001611020.1| eukaryotic initiation factor 4A-3 (eIF4A-3)  [Babesia bovis T2Bo]
 gi|154798273|gb|EDO07452.1| eukaryotic initiation factor 4A-3 (eIF4A-3) , putative [Babesia
           bovis]
          Length = 395

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 16/189 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
             I+VSAT     +E  +  +            +   G+    V +   + + + + D  
Sbjct: 197 QVILVSATLPQEVVEITEKFMNNPFRVLVKRDELTLDGIKQFFVAVEKEQWKFDTLCDLY 256

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   + ++   T+   + L + + + N  V  MH E+   ER +I++  R G+  V
Sbjct: 257 ESLIIT--QAVVFCNTREKVDWLAKRMQDSNFTVCKMHGEMSQKERNDIMQRFRRGESRV 314

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           L+  ++   GLD+ +  LV   D        S+ + I  IGR+ R     V I +     
Sbjct: 315 LISTDIWGRGLDVQQVSLVVNYD-----LPNSRENYIHRIGRSGRYGRKGVAINFVKDDD 369

Query: 695 KSIQLAIDE 703
             I   I++
Sbjct: 370 IRILRDIEQ 378


>gi|34364998|emb|CAE46035.1| hypothetical protein [Homo sapiens]
          Length = 496

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 222 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 275

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 276 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 334

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 335 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 389

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 390 YVHRIGRTGRSGNTGIATTF------INKACDES 417


>gi|326930919|ref|XP_003211585.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Meleagris
           gallopavo]
          Length = 597

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 76/214 (35%), Gaps = 31/214 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA----- 578
            T++ SAT      +  +  + E +    G ++      SA   +  + D  +       
Sbjct: 264 QTLMWSATWPKEVRQLAEDFLKEYVHINIGALEL-----SANHNILQIVDVCHDVEKDDK 318

Query: 579 ---------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                    +++  + ++ V TKR  +DLT  +         +H +    ER  ++ + +
Sbjct: 319 LIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFK 378

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GK  +L+  ++   GLD+ +   V   D     +  S    I  IGR AR+  +     
Sbjct: 379 HGKAPILIATDVASRGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKTGTAYT 433

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
             T        I +        +       INP+
Sbjct: 434 FFTPNN-----IKQVND--LISVLREANQAINPK 460


>gi|254706759|ref|ZP_05168587.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
          Length = 535

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 232 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 281

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 282 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 341

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 342 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGSSH 401

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 402 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 451


>gi|254505608|ref|ZP_05117754.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
 gi|219551261|gb|EED28240.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
          Length = 647

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQLRM 356

Query: 698 QLAIDETTR 706
              I+  T+
Sbjct: 357 LRTIERVTK 365


>gi|242787406|ref|XP_002481000.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500]
 gi|218721147|gb|EED20566.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500]
          Length = 543

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 79/210 (37%), Gaps = 23/210 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T + SAT    E+ Q     +   I+             +   VE+ S   + + +   
Sbjct: 296 QTCMWSAT-WPKEVRQLASDFLNDFIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKH 354

Query: 575 INLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +      +  + L+   TKR+A+D+T +L +       +H + +  ER  ++++ + GK 
Sbjct: 355 LEKIMDDRKNKCLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLQEFKNGKS 414

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+ +   V   D     +  +    +  IGR  R       +   T 
Sbjct: 415 PIMVATDVASRGIDVRDITHVINYD-----YPNNSEDYVHRIGRTGRAGAKGTAITFFTT 469

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
             S Q        R    +    K  I+P+
Sbjct: 470 DNSKQA-------RDLVTILSEAKQQIDPR 492


>gi|33861657|ref|NP_893218.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634234|emb|CAE19560.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 592

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 91/234 (38%), Gaps = 16/234 (6%)

Query: 523 PTTIVVSATPGSWEL----EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
              ++ SAT    E+    ++      E +I+        +  +    Q     D +   
Sbjct: 226 KQMVLFSAT-MPNEIRNIAKKYLNEPAEILIKSVKQETQLITQKYINVQRHHKLDALKRI 284

Query: 579 AQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +     +++ V TK +   + E L      V  ++ ++   +R   +  L+ G  D+LV
Sbjct: 285 LEITNEGVIIFVRTKLLTTSIAEALENSGHSVAVLNGDIPQNQRENTVDRLKKGFIDILV 344

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLD+    LV   D     F   K +    IGR  R   S   IL+ +   K 
Sbjct: 345 ATDVAARGLDVERIKLVINYD-----FPFDKETYTHRIGRTGRAGRSGEAILFVNQREKH 399

Query: 697 IQLAIDETTRRR--EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
               ++ +TR +  E ++ +NK   IN + + + I  + +  L ++      ++
Sbjct: 400 FLRNLENSTRNKIEEIEIPNNKI--INEKRMGKLITNLNESSLDQENNEEKKAL 451


>gi|6324217|ref|NP_014287.1| Dbp2p [Saccharomyces cerevisiae S288c]
 gi|118284|sp|P24783|DBP2_YEAST RecName: Full=ATP-dependent RNA helicase DBP2; AltName: Full=DEAD
           box protein 2; AltName: Full=p68-like protein
 gi|5272|emb|CAA36874.1| p68 protein [Saccharomyces cerevisiae]
 gi|1302034|emb|CAA95991.1| DBP2 [Saccharomyces cerevisiae]
 gi|285814541|tpg|DAA10435.1| TPA: Dbp2p [Saccharomyces cerevisiae S288c]
          Length = 546

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 81/211 (38%), Gaps = 25/211 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E++Q     +   I+          +  +   VE+ S   + + +   
Sbjct: 293 QTLMWSAT-WPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKY 351

Query: 575 INLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +  A+Q    + L+   TKRM +D+T+YL E       +H +    ER  ++++ R G+ 
Sbjct: 352 LETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRS 411

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
            ++V  ++   G+D+     V   D        +    +  IGR  R   +   I +   
Sbjct: 412 PIMVATDVAARGIDVKGINYVINYD-----MPGNIEDYVHRIGRTGRAGATGTAISFFTE 466

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
             K +          +   +      NI P+
Sbjct: 467 QNKGLGA--------KLISIMREANQNIPPE 489


>gi|217970063|ref|YP_002355297.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|217507390|gb|ACK54401.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 545

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 92/261 (35%), Gaps = 29/261 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++        ++  + + Q+  +   +  R     + GF  P       L  +
Sbjct: 134 TPGRLLDHL--------EQKSINLSQVEVLVLDEADRM---LDMGFI-PDIKRILALLPK 181

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE-QIIRP--TGLVDPPVE--IRSARTQVEDV 571
           +       +++ SAT           ++ E Q+I      +V   +   +    + ++  
Sbjct: 182 Q-----RQSLLFSATFSDEIKRLADQMLKEPQLIEVARRNMVSETITHVVHPVSSGMKRN 236

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                L  +   + L+ V TK M   L  YL    I    +H +    +R + +   + G
Sbjct: 237 LLAHLLRHKPDTQALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSG 296

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           K  VLV  ++   GLDI E   V   +        +    +  IGR  R  +    +   
Sbjct: 297 KLRVLVATDVAARGLDIDELPFVINFE-----LPHTAEDYVHRIGRTGRAGHHGYAISLV 351

Query: 692 TITKSIQLAIDETTRRREKQL 712
           +  +  +  + E  +  + Q+
Sbjct: 352 SSEE--KHWLSEIEKLIKLQI 370


>gi|164424171|ref|XP_962960.2| ATP-dependent RNA helicase dbp-2 [Neurospora crassa OR74A]
 gi|157070404|gb|EAA33724.2| ATP-dependent RNA helicase dbp-2 [Neurospora crassa OR74A]
          Length = 546

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 79/211 (37%), Gaps = 23/211 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVY--- 572
            T++ SAT            + + I    G +D          VE+ S   + + +    
Sbjct: 296 QTLMWSATWPKEVRNLAADFLTDFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIKHL 355

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I    +   +IL+   TKR+A+D+T +L +       +H + +  ER  ++   + GK
Sbjct: 356 EKIMEGRENQNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGK 415

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             ++V  ++   G+D+     V   D     +  +    I  IGR  R       +   T
Sbjct: 416 SPIMVATDVASRGIDVRNITHVLNYD-----YPNNSEDYIHRIGRTGRAGAKGTAITFFT 470

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
              S Q        R    +    K  I+P+
Sbjct: 471 TDNSKQA-------RELVGVLQEAKQQIDPR 494


>gi|298708634|emb|CBJ26121.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 516

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 13/183 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP---PVEIRSA-RTQVEDVYDEINLAA 579
              + SAT G    E  + ++ + I    G  +     ++ R     + E     I    
Sbjct: 264 QRALFSATVGQQVKELSESVLRDPIFLTVGTQNAGAADIDQRLVYVGREEGKLLAIRQLV 323

Query: 580 QQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           Q+GLR  +L+ + +K  A+ L   L    I    MH+     +R  II+  R G+  VL+
Sbjct: 324 QEGLRPPVLVFLQSKDRAKALFHELVYDGINTDVMHASRTQDQRDNIIQRFRTGEIWVLI 383

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL--YADTITK 695
             +L+  G+D     +V   D     F +S  S I  IGR  R     V +  + ++   
Sbjct: 384 CTDLVARGIDFKGVNMVINYD-----FPQSAVSYIHRIGRTGRAGRHGVAVTLFTESDMN 438

Query: 696 SIQ 698
           S++
Sbjct: 439 SLR 441


>gi|193785511|dbj|BAG50877.1| unnamed protein product [Homo sapiens]
 gi|193786536|dbj|BAG51319.1| unnamed protein product [Homo sapiens]
          Length = 413

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 217 VRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 276

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K I +  
Sbjct: 277 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITFFT 331

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 332 EDDKPLLRSV 341


>gi|167534955|ref|XP_001749152.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772305|gb|EDQ85958.1| predicted protein [Monosiga brevicollis MX1]
          Length = 543

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 24/149 (16%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A+ L E L   N+ V  +H++    +R E+++  R G+  VL+  +L+  
Sbjct: 350 VLIFVQSKSRAQQLFEELVYENVNVDVIHADRTQQQRDEVVKRFREGQVWVLICTDLMGR 409

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI-- 701
           G+D     +V   D     F  + T  I  +GR  R  +    + +     + +   I  
Sbjct: 410 GVDFKAVNVVINYD-----FPPNATEYIHRVGRTGRAGHRGRAVTFFTVDDRPMLRNIAN 464

Query: 702 ----------------DETTRRREKQLEH 714
                            +T ++R +Q+E 
Sbjct: 465 VVKASGSEVPEWMLKLKKTEKQRSRQIER 493


>gi|325982424|ref|YP_004294826.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325531943|gb|ADZ26664.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
          Length = 476

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 100/254 (39%), Gaps = 24/254 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
             ++ SAT  S E+++  G I++  I          + L+   V    ++ + E + D I
Sbjct: 188 QNLMFSAT-FSEEIKKLAGKILKSPILIEVAKQNSVSDLISHIVYSVESKNKQEFLIDMI 246

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +   ++L+   TK  A+ L + L  R+I    +H +   L+R + + + + G   +
Sbjct: 247 --KKKNLQQVLIFTRTKHGADHLAQKLNSRDILSSVIHGDRNQLQRTQALDNFKCGLIRI 304

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI E   V   +        +    +  IGR  R       +   +  +
Sbjct: 305 LVATDVAARGLDIEELTHVINFE-----LPNNPEDYVHRIGRTGRAGAKGFAISFVSREE 359

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
           ++ L   E     + Q+E       +   +K +  E  +   + +    + +   +  SL
Sbjct: 360 TVLLGGIERLLGIKIQVEE------SNSGLKNQQTEFPNKTKIIEEQKKSRAFSFKNESL 413

Query: 756 SKKKGKAHLKSLRK 769
           SK+     ++ +  
Sbjct: 414 SKR--SKRIEKMED 425


>gi|322794838|gb|EFZ17785.1| hypothetical protein SINV_13785 [Solenopsis invicta]
          Length = 586

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           VE    R+ + D+    N +        L+ V TK+ A+ L EYL      V  +H +  
Sbjct: 408 VEEHDKRSYLLDLLQASNFSDPTAESLTLVFVETKKGADMLEEYLASMGYPVTSIHGDRT 467

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + +R  R GK  +LV   +   GLDIP    V   D             +  IGR
Sbjct: 468 QREREDALRRFRAGKAPILVATAVAARGLDIPHVKHVINFD-----LPGDVEEYVHRIGR 522

Query: 678 AARNVNSK 685
             R  N  
Sbjct: 523 TGRMGNLG 530


>gi|297741203|emb|CBI32154.3| unnamed protein product [Vitis vinifera]
          Length = 401

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 81/243 (33%), Gaps = 37/243 (15%)

Query: 480 IPQISGMYRGDFHRKATLAEYGF-----RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           + Q   +   D      + + GF     R+   MD  P            T++ SAT   
Sbjct: 90  MVQYLALDEADR-----MLDMGFEPQIRRIVEQMDMPP-------RGVRQTMLFSAT-FP 136

Query: 535 WELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR-- 584
            E+++     +   I          T L+   VE      +   + D ++   + G    
Sbjct: 137 KEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVQESDKRSHLMDLLHAQRENGTHGK 196

Query: 585 ---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
               L+ V TK+ A+ L  +L         +H +    ER   +R  + G   +LV  ++
Sbjct: 197 QALTLVFVETKKGADALEHWLCINGFPATSIHGDRSQQEREHALRLFKSGATPILVATDV 256

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLA 700
              GLDIP    V   D             +  IGR  R   +     + +    S+   
Sbjct: 257 AARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKTGLATAFFNENNSSLARG 311

Query: 701 IDE 703
           + E
Sbjct: 312 LAE 314


>gi|37676819|ref|NP_937215.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201363|dbj|BAC97185.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 509

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 73/199 (36%), Gaps = 20/199 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT      E  +G++   +E  + P       VE  I  A   V+     + 
Sbjct: 178 KRQNLLFSATFSDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYPAD--VKKKPAMLA 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              + G   ++L+   TK  A  L  +L ++ +    +H       R + + D + G   
Sbjct: 236 KLIKDGDWRQVLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGDVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTI 693
           VLV  ++   G+DIP+   V   +  K          +  IGR  R   + K I     +
Sbjct: 296 VLVATDIAARGIDIPQLPQVVNFELPKV-----AEDYVHRIGRTGRAGETGKAISLVCAL 350

Query: 694 TKSIQLAIDETTRRREKQL 712
                 AI+     R  Q 
Sbjct: 351 EAPELFAIE-----RLIQE 364


>gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa
           E681]
 gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
           polymyxa E681]
          Length = 529

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 99/271 (36%), Gaps = 30/271 (11%)

Query: 524 TTIVVSAT-PGSWEL-------EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT P + +              ++ + +    +    +E+   R + E +   I
Sbjct: 177 QTMLFSATMPANIKRLAEQFLKNPEHVSVIPKQVSAPLIDQAYIEV-PERQKFEALSRLI 235

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++  +     ++   TKR  ++L E L +R      +H ++   +R  ++R  R G  DV
Sbjct: 236 DM--ESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDV 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLD+     V   D       +   S +  IGR  R         +     
Sbjct: 294 LVATDVAARGLDVSGVTHVVNFD-----LPQDPESYVHRIGRTGRAGKEGEAWSFVTPRE 348

Query: 695 KSIQLAIDETTRRR-------EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
                 I+  TR R               K  I    + E+++E ++   L +     I 
Sbjct: 349 IDHLHFIERVTRHRIPRKPLPTLAEALEGKQRI----IAERLLEAVESGELNEYKGLAIQ 404

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
           +  Q  S+  +   A LK +  +   A+  L
Sbjct: 405 MLEQYDSV--QLLSAALKLMTGEKREASIEL 433


>gi|227432573|ref|ZP_03914553.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351656|gb|EEJ41902.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 536

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 91/260 (35%), Gaps = 21/260 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +        E I I    L    V+   +R    +  D    I  
Sbjct: 188 QTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIFD 247

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                L  ++   TKR  E+L+  L  R      +H ++    R  ++   +  + ++LV
Sbjct: 248 VQAPKL-AIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 306

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS 696
             ++   GLD+ +   V   D       +   S +  IGR  R     V + +       
Sbjct: 307 ATDVAARGLDVKDVSHVYNFD-----IPQDPESYVHRIGRTGRAGAKGVSVTFVAPNEMD 361

Query: 697 IQLAIDETTRRRE--KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
              A+++ T++R    +    K   I    +     EV   I   + +     +DA    
Sbjct: 362 YLRAVEDLTKKRMTPLEPASLKDARI--GKINNAAGEVAKLIDTTEVSEIQSQVDALTAK 419

Query: 755 LSKKKGKAH----LKSLRKQ 770
            + ++  A     +  L KQ
Sbjct: 420 YTAEQLAAAVLSSVADLEKQ 439


>gi|125717559|ref|YP_001034692.1| RNA helicase [Streptococcus sanguinis SK36]
 gi|125497476|gb|ABN44142.1| RNA helicase, putative [Streptococcus sanguinis SK36]
          Length = 488

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 141 QTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVD-QYYIRVKENEKFDTMTRLM 199

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 200 D-VEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVL 258

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 259 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 313

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++    +       E        +
Sbjct: 314 GYLQIIENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKL 373

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    S ++   ++ SL  Q
Sbjct: 374 AAEF---SPEELAMYILSLTVQ 392


>gi|332653730|ref|ZP_08419474.1| ATP-dependent RNA helicase DeaD [Ruminococcaceae bacterium D16]
 gi|332516816|gb|EGJ46421.1| ATP-dependent RNA helicase DeaD [Ruminococcaceae bacterium D16]
          Length = 391

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 70/198 (35%), Gaps = 19/198 (9%)

Query: 529 SATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG--L 583
           SAT     ++     Q   VE  +R      P +       +  +  D +    + G   
Sbjct: 193 SATISREVMDISWVYQRDPVEITVRADEENKPDITQYRLDVERNEKVDTMVRLMEMGGYD 252

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R++    TK M + L   L  R+I    +H +++   R + ++  R G+  VL   ++  
Sbjct: 253 RVIAFCNTKNMTDRLAGLLRMRHITCEAIHGDIQQRVREKTLQKFREGQLRVLAATDVAA 312

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLDI +   V   D   E         I  IGR  R     V     +         + 
Sbjct: 313 RGLDIDDVDAVFNYDVPDEN-----EYYIHRIGRTGRAKRHGVAFSLVS---------NI 358

Query: 704 TTRRREKQLEHNKKHNIN 721
           T   R   ++ N  +NI 
Sbjct: 359 TEGIRLDDIQKNTGNNIQ 376


>gi|9438227|gb|AAF86585.1| DEAD box RNA helicase [Homo sapiens]
          Length = 724

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+    +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 540 DERTMVFVETKKKADFTATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 599

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 600 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 651


>gi|56477451|ref|YP_159040.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
 gi|56313494|emb|CAI08139.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
          Length = 463

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 74/192 (38%), Gaps = 22/192 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD--PPVEIRSARTQVEDVYDEINLA--- 578
            T++ SAT     L+   G +  ++ R    ++    VE R+   Q   + D I      
Sbjct: 181 QTLLFSAT-----LDGVVGNLARKMTRNPQRIEIAATVENRANIEQRLLMADNIVHKNRL 235

Query: 579 ------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      + ++   TKR AE+++  L E+      +H ++    R   +  LR G+
Sbjct: 236 LESLLGGDDLQQAVVFTATKRGAEEVSLNLQEKGFSAAALHGDMHQTARNRTLDKLRQGR 295

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VLV  ++   G+D+     V   DA ++         +  IGR  R     + I ++ 
Sbjct: 296 IGVLVATDVAARGIDVAGISHVINFDAPRQV-----EDYVHRIGRTGRAGRDGIAITFSG 350

Query: 692 TITKSIQLAIDE 703
                I  AI+ 
Sbjct: 351 PREMGIIRAIER 362


>gi|326798202|ref|YP_004316021.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
 gi|326548966|gb|ADZ77351.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
          Length = 419

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 74/197 (37%), Gaps = 29/197 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           ++  T+  SAT    E+ +    +++  +R        VE+    +  E V   +    +
Sbjct: 176 IKRQTLFFSAT-MPPEITKLANTLLKNPVR--------VEVTPVSSTAEKVTQVVYAVDK 226

Query: 581 QGLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
                             +L+   TK  A+ L ++L ++ ++   +H       R   ++
Sbjct: 227 ANKPKLLLHLLKSEVRDHVLVFTRTKHGADRLVKFLAKQGVQAAAIHGNKSQNARQNALQ 286

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSK 685
             + G+  VL+  ++   G+D+ E   V   D   E       + +  IGR  R   + K
Sbjct: 287 AFKSGQLKVLIATDIAARGIDVEELKFVINFDLPNE-----PETYVHRIGRTGRAGASGK 341

Query: 686 VILYADTITKSIQLAID 702
            + + D   +    +I+
Sbjct: 342 ALSFCDLEERPYLQSIN 358


>gi|294056345|ref|YP_003550003.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615678|gb|ADE55833.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 465

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 90/243 (37%), Gaps = 26/243 (10%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D+ HV + Q+      +  R     + GF      D R  +       +  T++ SAT
Sbjct: 141 LMDQGHVDLSQVETFILDEADRM---LDMGFI----RDIR--KIAAKLPKKRQTLLFSAT 191

Query: 532 PGSWELEQCQGIIVEQI----IRPTGLVDPPVE----IRSARTQVEDVYDEINLAAQQ-- 581
               E+ +    ++ Q     I P G     V+        + + + + + ++    +  
Sbjct: 192 MAP-EITKLGHAMLHQPAEIRIAPQGTTADKVDQSLCFIGKKAKPKLLLEMLHRRFDEQP 250

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
               L+   TK  A++L + L    ++   +H       R + +   R G+ D+LV  ++
Sbjct: 251 NELSLVFTRTKHGAKNLAKKLNGEGLKADAIHGNKSQSAREKTLERYRRGEIDILVATDV 310

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLA 700
              G+D+    LV   D   E       + +  IGR AR   +   + +      ++   
Sbjct: 311 AARGIDVKNITLVINFDLPME-----ADAYVHRIGRTARAGASGHAVSFCSEEEVALLRQ 365

Query: 701 IDE 703
           I+ 
Sbjct: 366 IER 368


>gi|254566967|ref|XP_002490594.1| Nucleolar protein required for maturation of 18S rRNA [Pichia
           pastoris GS115]
 gi|238030390|emb|CAY68313.1| Nucleolar protein required for maturation of 18S rRNA [Pichia
           pastoris GS115]
 gi|328350981|emb|CCA37381.1| DEAD-box protein, putative RNA helicase similar to S. cerevisiae
           FAL1 (YDR021W) involved in rRNA processing [Pichia
           pastoris CBS 7435]
          Length = 396

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 73/175 (41%), Gaps = 23/175 (13%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVE--QIIRPTGLVDPPVEIRSARTQVE----------D 570
              +VVSAT     L      + +  +I+     V     IR    Q E          D
Sbjct: 197 TQVVVVSATLTKEVLVMTNKFMNDPVKILVKRDEVSLE-GIRQFYIQCEKEEWKFDTLCD 255

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   TK+  + LTE+L + N  V  MH ++K  +R  I+ + RL
Sbjct: 256 LYDSLTVT-----QAVIFCNTKKKVDWLTEHLRKANFTVVSMHGDMKQEDRDRIMNEFRL 310

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           G   VL+  ++   G+D+ +  LV   D        +K + I  IGR+ R     
Sbjct: 311 GNSRVLISTDVWARGIDVQQVSLVINYD-----IPFAKENYIHRIGRSGRFGRKG 360


>gi|152986565|ref|YP_001346544.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150961723|gb|ABR83748.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 447

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 82/211 (38%), Gaps = 11/211 (5%)

Query: 521 LRPTTIVVSATPGSWELEQCQGII-----VEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            +  T++ SAT           ++     +E   R T        +     + +      
Sbjct: 178 RKRQTLLFSATFSDAIRTLAGELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCH 237

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            L A +  + L+   T++  E+L   L  + I    +H +     R+  ++  + G+ D+
Sbjct: 238 LLQANRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDL 297

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT- 694
           LV  ++   GLDI E  LV   D             I   GRA     +  ++ AD +  
Sbjct: 298 LVATDVAARGLDIEEMPLVVNFDLPIV--AEDYVHRIGRTGRAGATGQALSLVCADEVEL 355

Query: 695 -KSIQLAIDETTRRREKQLEHNKKHNINPQS 724
             +I+  I +T +RRE + +   +H   PQ+
Sbjct: 356 LAAIETLIGQTLQRRE-EPDFEPEHR-VPQT 384


>gi|296119482|ref|ZP_06838040.1| putative cold shock DEAD-box protein A [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967365|gb|EFG80632.1| putative cold shock DEAD-box protein A [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 658

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E++ E L +       ++ ++   +R   +  L+ G+ D+LV  ++   
Sbjct: 302 MIVFCRTKHETEEVAEKLRDAGYNAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAAR 361

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     + +  +I+ 
Sbjct: 362 GLDVDRITHVVNFD-----IPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIER 416

Query: 704 TTRRREKQLE 713
            T  R +++E
Sbjct: 417 VTNARLEEME 426


>gi|291240646|ref|XP_002740231.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked-like
           [Saccoglossus kowalevskii]
          Length = 694

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 10/127 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TK+ A+ L ++LY    R   +H +    ER E +R  R G+  +LV   +   
Sbjct: 489 TLVFVETKKGADSLEDFLYRDGHRATSIHGDRSQREREEALRSFRTGQTPILVATAVAAR 548

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI--LYADT---ITKSIQL 699
           GLDIP    V   D             +  IGR  R  N  +    + D    + + +  
Sbjct: 549 GLDIPNVKHVINFD-----MPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNRNVVRDLLE 603

Query: 700 AIDETTR 706
            I ET +
Sbjct: 604 LIMETKQ 610


>gi|195111735|ref|XP_002000433.1| GI10230 [Drosophila mojavensis]
 gi|193917027|gb|EDW15894.1| GI10230 [Drosophila mojavensis]
          Length = 801

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 64/177 (36%), Gaps = 17/177 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--------IRSARTQ--VEDVYD 573
            T++ SAT      E     +   I    G V    E        +     +  + D+  
Sbjct: 484 QTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYDQDKRSYLLDLLS 543

Query: 574 EINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            I    +  +    L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R  R G
Sbjct: 544 SIRDGPEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSG 603

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              +LV   +   GLDIP    V   D             +  IGR  R  N  V  
Sbjct: 604 DCPILVATAVAARGLDIPHVTHVINFD-----LPTDVEEYVHRIGRTGRMGNLGVAT 655


>gi|58697110|ref|ZP_00372550.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58698416|ref|ZP_00373327.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630895|ref|YP_002727686.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp.
           wRi]
 gi|58535071|gb|EAL59159.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58536598|gb|EAL59931.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592876|gb|ACN95895.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp.
           wRi]
          Length = 402

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 15/182 (8%)

Query: 521 LRPTTIVVSAT-PGS------WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
               T++ SAT PG         L + + I V+  +  +  +   +   S   + E +  
Sbjct: 169 KIRQTLMFSATLPGDIVKLAEKYLNRPERISVDCEVTTSVKIKQEIVYASESEKYEKLVT 228

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++         I++ V TKR A+ L   L++ +     +H +++  +R  +I   R G+ 
Sbjct: 229 QLCQREGS---IIIFVKTKRGADQLAHRLHKDDYSALAIHGDLRQHKRERVINSFRRGRN 285

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   GLDIP    V   DA      +S+   I  IGR AR       L   T 
Sbjct: 286 QIMVATDVASRGLDIPHIQHVINYDA-----PQSQADYIHRIGRTARAGAEGYALSFVTP 340

Query: 694 TK 695
             
Sbjct: 341 QD 342


>gi|324990619|gb|EGC22555.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK353]
 gi|325688268|gb|EGD30287.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK72]
          Length = 523

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVD-QYYIRVKENEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADENIHSNFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    S ++   ++ SL  Q
Sbjct: 409 AAEF---SPEELAMYILSLTVQ 427


>gi|120564782|gb|ABM30180.1| VASA2n [Paragonimus westermani]
          Length = 606

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 6/135 (4%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D   ++  ++  G+  L+ V TKR A+ L +YL+ +  +V  +H +    +R   +   R
Sbjct: 377 DALVDLLSSSDPGVLTLVFVETKRGADSLEDYLFSQKFQVASIHGDRTQDDRELALSCFR 436

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL- 688
            G+  +LV   +   GLDIP    V   D             +  IGR  R  N  +   
Sbjct: 437 NGRTPILVATAVAARGLDIPNVKHVINYD-----LPSDIEEYVHRIGRTGRVGNLGIATS 491

Query: 689 YADTITKSIQLAIDE 703
           + +   +++   + E
Sbjct: 492 FFNDKNRNLARGLVE 506


>gi|42518357|ref|NP_964287.1| RNA helicase [Lactobacillus johnsonii NCC 533]
 gi|41582642|gb|AAS08253.1| probable RNA helicase [Lactobacillus johnsonii NCC 533]
          Length = 484

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 97/259 (37%), Gaps = 19/259 (7%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEI 575
           +  T++ SAT   P     E+         I+   L    ++   +R+   +  D+   +
Sbjct: 174 KHQTLLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRL 233

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L  ++   TKR  ++LT  L  R      +H ++   +R+ +++  R GK D+
Sbjct: 234 IDVQNPDL-AVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDI 292

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   N   + +     
Sbjct: 293 LVATDVAARGLDISGVSHVYNYD-----IPQDPNSYVHRIGRTGRAGQNGMSVTFVTPNE 347

Query: 695 KSIQLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                 I++ T ++   L+     +       +  +K+ E++D  L +     +  +D  
Sbjct: 348 IGYMRTIEQLTHKKMMPLKPPTDEEAFKGQLSAANKKVAELLDSDLSKYTEEASQLLD-- 405

Query: 752 QLSLSKKKGKAHLKSLRKQ 770
               +     A LK L K 
Sbjct: 406 -DYSAIDLVAALLKDLSKD 423


>gi|46111511|ref|XP_382813.1| hypothetical protein FG02637.1 [Gibberella zeae PH-1]
 gi|91206544|sp|Q4IJH1|DBP3_GIBZE RecName: Full=ATP-dependent RNA helicase DBP3
          Length = 581

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 9/162 (5%)

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEI---NLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           ++    +   VE+   R +   + + +      +++  RIL+  L K+ A  +  +L  +
Sbjct: 381 LQANARISQSVEVLEPRGKEFRLLEVLKEHQQGSKKNDRILVFCLYKKEATRIENFLSRK 440

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            IRV  +H +++  +R   +   + G+  VLV  ++   GLDIPE  LV  +      F 
Sbjct: 441 GIRVGGIHGDLRQEQRTRSLEAFKSGQTPVLVATDVAARGLDIPEVKLVINV-----TFP 495

Query: 666 RSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTR 706
            +    +  IGR  R   +   I +     KS   ++    R
Sbjct: 496 LTIEDYVHRIGRTGRAGKTGQAITFFTVEDKSHSGSLVNILR 537


>gi|255324480|ref|ZP_05365597.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
           SK141]
 gi|255298386|gb|EET77686.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
           SK141]
          Length = 619

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++   TK   E++ E L +R      ++ ++   +R   +  L+ G+ D+LV  ++   
Sbjct: 297 IIVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAAR 356

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     + +  +I+ 
Sbjct: 357 GLDVERITHVVNFD-----IPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIER 411

Query: 704 -TTRRRE 709
            T  R E
Sbjct: 412 VTNARLE 418


>gi|260655930|ref|ZP_05861399.1| putative transcription-repair coupling factor [Jonquetella anthropi
           E3_33 E1]
 gi|260629546|gb|EEX47740.1| putative transcription-repair coupling factor [Jonquetella anthropi
           E3_33 E1]
          Length = 1023

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 62/147 (42%), Gaps = 7/147 (4%)

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           QP A++P  +  ++ ++   + +   R S     LE    ++V+      G+ +      
Sbjct: 60  QPAAFLP--EPPLDAQNLRGDGVWLERGSVWNRWLEDEGILIVTPG----GLCTPMRSPD 113

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
             + + +G  V +  L+  L+ Q Y+RQ +   RG   V G  ++ +    +    RV  
Sbjct: 114 GAMTITLGQEVGRDHLVRWLIGQGYRRQSMVWERGDMAVRGAVVDFYDPSAQ-WPVRVEF 172

Query: 353 FGNDIEEISEFYPLTGQKIRNVETIKI 379
           F +D+E +  F P + +    V    +
Sbjct: 173 FDDDVEAMRLFAPKSQRSFETVSQAVV 199



 Score = 45.1 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 43/132 (32%), Gaps = 19/132 (14%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            QV  +++ I    Q   R+             ++   +  + V   H ++   E  +++
Sbjct: 705 GQVYYLHNRIEDIQQVAWRV-------------SQRFPDAPLAVA--HGQMNQRELEDVM 749

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
                G   +L+   ++  GLD+     + + D    G  +    + Q  GR  R     
Sbjct: 750 ERFYRGAVQILICTTIVESGLDVARANTLVVDDVRWLGLAQ----MHQIRGRIGRRQEDG 805

Query: 686 VILYADTITKSI 697
              +      + 
Sbjct: 806 YAYFLYPGDDAS 817


>gi|158264214|gb|ABW24667.1| putative ATP-dependent RNA helicase DDX4 [Rana nigromaculata]
          Length = 398

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 78/218 (35%), Gaps = 28/218 (12%)

Query: 496 TLAEYGFR-----------LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ--G 542
            + + GFR           +PS  + + L F         T   S    + E+ +     
Sbjct: 122 RMLDMGFREDIESLLKSPGMPSKEERQTLMFSA-------TFPSSIQSLAREILKPDYLF 174

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           ++V Q+      V+  V       + + + + +        R ++ V TK+ A+ +  +L
Sbjct: 175 VVVGQVGGACSDVEQLVIEVEESGKKDKLMEILQQIGS--ERTMVFVKTKKKADFIATFL 232

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H + +  ER   +RD R G+  V+V  +    GLDI     V   D    
Sbjct: 233 CQEKVPSTSIHGDREQREREMALRDFRTGQCPVIVATSAAARGLDIENVSYVINFDV--- 289

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQL 699
                    +  IGR  R  N+   I + D      Q 
Sbjct: 290 --PDDIDEYVHRIGRTGRCGNTGRAISFFDKRGDDEQR 325


>gi|156084974|ref|XP_001609970.1| p68-like protein [Babesia bovis]
 gi|154797222|gb|EDO06402.1| p68-like protein [Babesia bovis]
          Length = 529

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 72/180 (40%), Gaps = 18/180 (10%)

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
           GS +L+ C  +  E  +         +E    R+Q++ +  +I     QG +IL+   TK
Sbjct: 318 GSLDLKTCHNVSQEVFV---------IEEHEKRSQLKKILGQIG----QGTKILIFTDTK 364

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           + A+ +T+ L         +H + K  ER  ++ + + GK  ++V  ++   GLD+ +  
Sbjct: 365 KTADSITKELRLDGWPALSIHGDKKQEERNWVLNEFKSGKHPIMVATDVASRGLDVRDVK 424

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           +V   D     F       +  IGR  R  N        T  K+          R  KQ 
Sbjct: 425 VVINFD-----FPNQIEDYVHRIGRTGRGGNKGASYTFLTPDKNRVARELVKLMREAKQQ 479


>gi|156050031|ref|XP_001590977.1| hypothetical protein SS1G_07601 [Sclerotinia sclerotiorum 1980]
 gi|154692003|gb|EDN91741.1| hypothetical protein SS1G_07601 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 673

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 6/138 (4%)

Query: 568 VEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + ++      A  +G +  ++  +       LT    E  I  +++  +   +ER   + 
Sbjct: 283 INELTVRSWFAKAKGRKSTIVFCVDLAHVGGLTNKFREHGIDAQFVTGDTPKIERSTRLD 342

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R G+F VLV   +  EG DIP    V +    K     S+  L+Q IGR  R    K 
Sbjct: 343 AFRNGEFPVLVNCGVFTEGTDIPNIDCVLLARPTK-----SRNLLVQMIGRGMRLHPGKE 397

Query: 687 ILYADTITKSIQLAIDET 704
             +   +  ++   I  T
Sbjct: 398 NCHIIDMVATLSTGIVTT 415


>gi|149183244|ref|ZP_01861688.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
 gi|148849040|gb|EDL63246.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
          Length = 470

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 104/256 (40%), Gaps = 16/256 (6%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT PG   ++        E + ++   +  P +E    +   ++ +D ++    
Sbjct: 158 QTLLFSATMPGPIRKIANNFMTDPETVSVKSKEMTVPHIEQYFVKAHEKEKFDVLSRLLD 217

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L   L  R      +H ++   +R+ ++R  + G+ DVLV 
Sbjct: 218 VQSPELAIIFGRTKRRVDELARALTLRGYSAEGIHGDLSQAKRMTVLRQFKEGRIDVLVA 277

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI     V   D       +   S +  IGR  R     + +   T  +   
Sbjct: 278 TDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKEGMAMTFVTPREMGY 332

Query: 699 LAIDE-TTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
           L I E TT++   Q++    N+      +   EK++E +    L++       +     S
Sbjct: 333 LRIVEKTTKKSMTQMKPPTSNEALEGQQRLAMEKLVETVKSNELQNYRGMAKELLEDHDS 392

Query: 755 LSKKKGKAHLKSLRKQ 770
           +  +   A L+ + K+
Sbjct: 393 V--EIVAAALRLMTKE 406


>gi|58428518|gb|AAW77555.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 647

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+              +  +             + + GF      D R L   
Sbjct: 214 TPGRLIDYV----------KQHKVVSLHACEICVLDEADRMFDLGFI----KDIRFLLRR 259

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIR---SARTQVED 570
                   T++ SAT     LE     + E    ++    +    V  R    +  + + 
Sbjct: 260 MPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDDEKQT 319

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +   ++ G R ++ V TK   E +   L     RV  +  +V   +R  ++   + 
Sbjct: 320 LLLGLLSRSE-GARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK 378

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G+ ++LV  ++   GL I     V   D             +  IGR AR       I +
Sbjct: 379 GQLEILVATDVAARGLHIDGVKYVYNYD-----LPFDAEDYVHRIGRTARLGEEGDAISF 433

Query: 690 ADT 692
           A  
Sbjct: 434 ACE 436


>gi|148549843|ref|YP_001269945.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148513901|gb|ABQ80761.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 443

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 87/260 (33%), Gaps = 34/260 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L +   ++++           Q+  +   +  R     + GF   L S     P  
Sbjct: 131 TPGRLLDLFRQNAV--------KFNQVQTLVLDEADRM---LDLGFAEELQSVYAALP-- 177

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVE 569
                  +  T++ SAT            + + +   + P       V+  +     + +
Sbjct: 178 ------RKRQTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATATSVKQWLVPVDKKRK 231

Query: 570 -DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            D++  +    Q+  ++L+   T+   + L E L    +    +H +     R   +   
Sbjct: 232 ADLFCHLL-RKQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSF 290

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           +  +  VLV  ++   GLDI +  LV  LD             +  IGR  R  N    I
Sbjct: 291 KAREVQVLVATDVAARGLDIDDLPLVVNLDLPIV-----AEDYVHRIGRTGRAGNKGEAI 345

Query: 688 LYADTITKSIQLAIDETTRR 707
                    +  AI+  TR+
Sbjct: 346 SLVCADEVQLLAAIEVLTRQ 365


>gi|195998213|ref|XP_002108975.1| hypothetical protein TRIADDRAFT_63563 [Trichoplax adhaerens]
 gi|190589751|gb|EDV29773.1| hypothetical protein TRIADDRAFT_63563 [Trichoplax adhaerens]
          Length = 654

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 14/178 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T++ SAT         +  + + +    G  D          VE+     + + +   +
Sbjct: 259 QTVMWSATWPKEIRTLAREFLRDYVQINIGSSDLTTNHNIKQIVEVCREEEKEDKLCKLL 318

Query: 576 NLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +   +Q  +  ++ V TK+ ++ L+  L      V  +H +    ER  ++ + R G+  
Sbjct: 319 SDILRQDEKKTIVFVETKKKSDYLSRRLVRSGWPVLCIHGDKCQSERDRVLSEFRSGRIP 378

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           VL+  ++   GLDI +  LV   D     F  +    +  IGR AR+  +       T
Sbjct: 379 VLIATDVAARGLDISDVKLVINYD-----FPNNSEDYVHRIGRTARSGKTGTAYTFFT 431


>gi|119605383|gb|EAW84977.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_a [Homo
           sapiens]
 gi|119605386|gb|EAW84980.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_a [Homo
           sapiens]
 gi|193787208|dbj|BAG52414.1| unnamed protein product [Homo sapiens]
          Length = 496

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 222 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 275

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 276 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 334

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 335 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 389

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 390 YVHRIGRTGRSGNTGIATTF------INKACDES 417


>gi|229918086|ref|YP_002886732.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
 gi|229469515|gb|ACQ71287.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
          Length = 509

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 97/271 (35%), Gaps = 34/271 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE------IRSARTQVEDVYDEINL 577
            T++ SAT      +  +  +    I      +  VE      +     Q  D    +  
Sbjct: 177 QTLLFSATMPPQIKKIAERFMKSPTIIKVKAKEMTVENINQQFLELREGQKFDTLCRLID 236

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                   ++   TK+  +++TE L +R      +H ++   +R ++IR  + G  D+LV
Sbjct: 237 -IDSPELSIIFARTKKRVDEVTEALIKRGYTADGLHGDLTQSKRDQVIRRFKNGTIDILV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   +   L   T  +  
Sbjct: 296 ATDVAARGLDISGVTHVYNFDV-----PQDPESYVHRIGRTGRAGKTGTALTFITPREFG 350

Query: 698 Q-LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
           Q  AI+  T +     + N++H   P      I EV++    + A      + A      
Sbjct: 351 QVKAIERVTNK-----KMNRRH--VPT-----IAEVLEGNQKQAAEELIERVQAGDFKAY 398

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARIR 787
            +     L+      + A + L    AA +R
Sbjct: 399 TQLATELLEE-----YEAVEIL----AAALR 420


>gi|83745783|ref|ZP_00942840.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
 gi|207743697|ref|YP_002260089.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
 gi|83727473|gb|EAP74594.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
 gi|206595096|emb|CAQ62023.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
          Length = 631

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 9/149 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR A+ L E L E       +H ++    R   +  LR G   +LV  ++  
Sbjct: 327 QAIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNRTLTALRRGHLRILVATDVAA 386

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAID 702
            G+D+P+   V   D  K+         +  IGR  R   S + +       + Q   I+
Sbjct: 387 RGIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGIAINLVNHGDTFQWRRIE 441

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIME 731
               RR   +       + P+   +   E
Sbjct: 442 RFVDRR---INATVVEGLEPKRSPKPRRE 467


>gi|327277992|ref|XP_003223747.1| PREDICTED: nucleolar RNA helicase 2-like [Anolis carolinensis]
          Length = 628

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 93/254 (36%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   ++ I + T      VE  +           + 
Sbjct: 231 PQTLLFSATCPHWVYDVAKKYMKSKYEQIDLIGKKTKKTAMTVEHLAIECHWSQRAAVIG 290

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+ A +L           + +H ++   +R   ++  R G 
Sbjct: 291 DVLQVYSGSHGRTIIFCETKKEATELA-LNASIKQDAQSLHGDIPQKQREVTLKGFRNGA 349

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + + +    
Sbjct: 350 FGVLVATNVAARGLDIPEVDLVIQSSPPKDV-----ESYIHRSGRTGRAGRTGMCICFYQ 404

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QL          KQ+E  +K  I  + V       I     +DA  +  S+    
Sbjct: 405 RKEDYQL----------KQVE--QKAGITFKRVGVPTATDIIKASSKDAIKSLDSVPPSA 452

Query: 753 LSLSKKKGKAHLKS 766
           +   ++  +  ++ 
Sbjct: 453 IDYFRQSAERLIEE 466


>gi|195395963|ref|XP_002056603.1| GJ11034 [Drosophila virilis]
 gi|194143312|gb|EDW59715.1| GJ11034 [Drosophila virilis]
          Length = 817

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 64/177 (36%), Gaps = 17/177 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--------IRSARTQ--VEDVYD 573
            T++ SAT      E     +   I    G V    E        +     +  + D+  
Sbjct: 498 QTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYDQDKRSYLLDLLS 557

Query: 574 EINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            I    +  +    L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R  R G
Sbjct: 558 SIRDGPEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSG 617

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              +LV   +   GLDIP    V   D             +  IGR  R  N  V  
Sbjct: 618 DCPILVATAVAARGLDIPHVTHVINFD-----LPTDVEEYVHRIGRTGRMGNLGVAT 669


>gi|52430509|gb|AAH82849.1| DDX5 protein [Xenopus laevis]
          Length = 608

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 25/189 (13%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA--QQGLRILLTVLTKRM 594
           LE      + QI+                 + +D    +      ++  + ++ V TKR 
Sbjct: 303 LELSANHNILQIVDVCN-----------DGEKDDKLVRLMEEIMSEKENKTIVFVETKRR 351

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            +DLT  L         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V
Sbjct: 352 CDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIATDVASRGLDVEDVKFV 411

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH 714
              D     +  S    I  IGR AR+  +       T        I +        +  
Sbjct: 412 INYD-----YPNSSEDYIHRIGRTARSSKTGTAYTFFTPGN-----IKQVND--LISVLR 459

Query: 715 NKKHNINPQ 723
                INP+
Sbjct: 460 EANQAINPK 468


>gi|218674642|ref|ZP_03524311.1| DEAD/DEAH box helicase domain protein [Rhizobium etli GR56]
          Length = 420

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 63/193 (32%), Gaps = 18/193 (9%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T+  SAT  P   +L        E+I +         V  R   +  +D      L   
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLREL 239

Query: 579 -AQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              QG     ++    K+   DL   L      V  +H ++    R  +++  R G   +
Sbjct: 240 VRAQGELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMMLQSFRDGNLQL 299

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT--- 692
           LV  ++   GLDIP+   V   D             +  IGR  R   S       T   
Sbjct: 300 LVASDVAARGLDIPDVSHVFNFDVPI-----HSEDYVHRIGRTGRAGRSGAAFTLVTKRD 354

Query: 693 --ITKSIQLAIDE 703
                +I+  I E
Sbjct: 355 TKFVDAIEKLIGE 367


>gi|158300210|ref|XP_001689233.1| AGAP012358-PB [Anopheles gambiae str. PEST]
 gi|158300212|ref|XP_320199.4| AGAP012358-PA [Anopheles gambiae str. PEST]
 gi|157013048|gb|EDO63299.1| AGAP012358-PB [Anopheles gambiae str. PEST]
 gi|157013049|gb|EAA00143.4| AGAP012358-PA [Anopheles gambiae str. PEST]
          Length = 598

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A+ L   L    + V  +HS+    ER  ++R  R GK  +L+   L+  
Sbjct: 393 VLVFVQSKDRAQQLFTELIYDGLNVDVIHSDRTQRERDNVVRAFREGKIWILICTELMSR 452

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE 703
           G+D     LV   D     F  S  S +  IGR  R     K + +          +I +
Sbjct: 453 GIDFKGVNLVVNYD-----FPPSTISYVHRIGRTGRAGRPGKAVTFFTKDDTVNLKSIAQ 507


>gi|148613133|gb|ABQ96191.1| vasa [Scaptotrigona postica]
 gi|205318891|gb|ACI02437.1| vasa [Frieseomelitta varia]
          Length = 624

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 85/256 (33%), Gaps = 40/256 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++        V++  V    +  +   +  R     + GF LPS          
Sbjct: 328 TPGRLLDF--------VEKGRVKFSSVQFLVLDEADRM---LDMGF-LPSIEKMVDH--- 372

Query: 517 EWNCLRP----TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV--------DPPVEIRSA 564
               + P     T++ SAT         +  +   +    G+V            E+  A
Sbjct: 373 --ETMVPLGERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVGRNFYEV--A 428

Query: 565 RTQVEDVYDEINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R + +D+  EI             L+ V  K+ A+ +  +L E N     +H +    +R
Sbjct: 429 RNKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQR 488

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            E + D + G+  +LV   +   GLDI     V   D  K          +  IGR  R 
Sbjct: 489 EEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPK-----GIDEYVHRIGRTGRV 543

Query: 682 VNSK-VILYADTITKS 696
            N      + D    +
Sbjct: 544 GNRGRATSFFDPEEDA 559


>gi|148613135|gb|ABQ96192.1| vasa [Melipona scutellaris]
 gi|205318889|gb|ACI02436.1| vasa [Melipona quadrifasciata]
          Length = 624

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 85/256 (33%), Gaps = 40/256 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++        V++  V    +  +   +  R     + GF LPS          
Sbjct: 328 TPGRLLDF--------VEKGRVKFSSVQFLVLDEADRM---LDMGF-LPSIEKMVDH--- 372

Query: 517 EWNCLRP----TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV--------DPPVEIRSA 564
               + P     T++ SAT         +  +   +    G+V            E+  A
Sbjct: 373 --ETMVPLGERQTLMFSATFPDEVHHLARRFLNNYLFLAVGIVGGARSDVEQNFCEV--A 428

Query: 565 RTQVEDVYDEINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R + +D+  EI             L+ V  K+ A+ +  +L E N     +H +    +R
Sbjct: 429 RNKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQR 488

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            E + D + G+  +LV   +   GLDI     V   D  K          +  IGR  R 
Sbjct: 489 EEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPK-----GIDEYVHRIGRTGRV 543

Query: 682 VNSK-VILYADTITKS 696
            N      + D    +
Sbjct: 544 GNRGRATSFFDPEEDA 559


>gi|73540622|ref|YP_295142.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72118035|gb|AAZ60298.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 632

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 7/126 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR A+ L E L +       +H ++    R   +  LR G   VLV  ++  
Sbjct: 314 QAIVFTATKRDADSLAERLSDTGFAAGALHGDMTQGARNRTLTALRRGNLRVLVATDVAA 373

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAID 702
            G+D+P+   V   D  K+         +  IGR  R   S V +       + Q   I+
Sbjct: 374 RGIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGVAINLVNHNDTFQWKRIE 428

Query: 703 E-TTRR 707
             T  R
Sbjct: 429 RFTNNR 434


>gi|227503818|ref|ZP_03933867.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
 gi|227199642|gb|EEI79690.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
          Length = 678

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 7/127 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++   TK   E++ + L +       ++ ++   +R   +  L+ G+ D+LV  ++   
Sbjct: 296 IIVFCRTKHETEEVADSLRDAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVATDVAAR 355

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     + +  +I+ 
Sbjct: 356 GLDVDRITHVVNYD-----IPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIER 410

Query: 704 -TTRRRE 709
            T  R E
Sbjct: 411 VTNARLE 417


>gi|168015062|ref|XP_001760070.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688820|gb|EDQ75195.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 657

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 95/265 (35%), Gaps = 43/265 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV--EIRSARTQVEDVY--------- 572
            T++ SAT  +W        I  + ++P       V  E   A   V+ +          
Sbjct: 266 QTLLFSATLPTW-----VQQIARKFLKPERRTVDLVGDEKMKASNNVKHLLLPGHYSMRT 320

Query: 573 ---DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
               ++      G RI++   TK  A +L   L  ++   R +H ++   +R   ++  R
Sbjct: 321 QLVQDVIQCYGSGGRIIVFTETKNDASELAGVL--KSGTARALHGDIPQNQREVTLQGFR 378

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
             KF VLV  ++   GLDI +  LV   +  ++       + I   GR  R  N+ + +L
Sbjct: 379 TSKFSVLVATDVAARGLDINDVQLVIQCEPPRD-----AETYIHRSGRTGRAGNTGISVL 433

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-----------KIMEVIDPIL 737
           + D   + +   I+     R+   +  +     P  + +            + + + P+ 
Sbjct: 434 FYDRKKEYMIPQIE-----RKAGFKFERIAAPQPADIAKASGNTATDGVLAVSDTVIPLF 488

Query: 738 LEDAATTNISIDAQQLSLSKKKGKA 762
            + A     S     L +  K    
Sbjct: 489 RQAAEDLVKSSGLPVLDVLAKAIAK 513


>gi|123966425|ref|YP_001011506.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200791|gb|ABM72399.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9515]
          Length = 595

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 91/234 (38%), Gaps = 16/234 (6%)

Query: 523 PTTIVVSATPGSWEL----EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
              ++ SAT    E+    ++      E +I+        +  R    Q     + +   
Sbjct: 227 KQMVLFSAT-MPNEIRNIAKKYLNDPAEILIKSVKKETQLITQRYINVQRHHKLEALKRI 285

Query: 579 AQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +     +++ V TK +   + E L      V  ++ ++   +R   +  L+ G  D+LV
Sbjct: 286 LEITNEGVIIFVRTKLLTTSIAEALENSGHSVAVLNGDIPQNQRENTVDRLKKGFIDILV 345

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLD+    LV   D     F   K +    IGR  R   S   IL+ +   K 
Sbjct: 346 ATDVAARGLDVERIKLVINYD-----FPFDKETYTHRIGRTGRAGRSGEAILFVNQREKH 400

Query: 697 IQLAIDETTRRR--EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
               ++ +TR +  E ++ +NK   IN + + + I  + +  L ++      ++
Sbjct: 401 FLRNLENSTRNKIEEIEIPNNKL--INEKRMGKLISNLNEISLAQENNEEKKAL 452


>gi|170719840|ref|YP_001747528.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169757843|gb|ACA71159.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 439

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 87/259 (33%), Gaps = 33/259 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L +   ++++           Q+  +   +  R     + GF   L S     P  
Sbjct: 131 TPGRLLDLFRQNAV--------KFNQVQTLVLDEADRM---LDLGFAEELQSVYAALP-- 177

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVE 569
                  +  T++ SAT            + + +   + P       V+  +     + +
Sbjct: 178 ------RKRQTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNAAATTVKQWLVPVDKKRK 231

Query: 570 -DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            D++  +    Q+  ++L+   T+   + L E L    +    +H +     R   +   
Sbjct: 232 VDLFCHLL-RKQRWKQVLVFAKTRNGVDQLVERLLGEGVNADGIHGDRPQATRQRALDSF 290

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +  +  VLV  ++   GLDI +  LV  LD             +  IGR  R  N    +
Sbjct: 291 KAREIQVLVATDVAARGLDIDDLPLVVNLDLPIV-----AEDYVHRIGRTGRAGNKGEAI 345

Query: 689 YADTITKSIQLAIDETTRR 707
                 +  QLA  ET  R
Sbjct: 346 SLVCADEVQQLATIETLIR 364


>gi|50293017|ref|XP_448941.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661092|sp|Q6FLF3|DBP2_CANGA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49528254|emb|CAG61911.1| unnamed protein product [Candida glabrata]
          Length = 544

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 84/215 (39%), Gaps = 26/215 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E++Q     +   I+          +  +   VE+ S   + + +   
Sbjct: 290 QTLMWSAT-WPKEVQQLARDYLNDPIQVQIGSLELAASHNITQLVEVVSEFEKRDRLVKH 348

Query: 575 INLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++ A+Q    +IL+   TKR  +++T YL +       +H +    ER  ++ + R G  
Sbjct: 349 LDTASQDKESKILIFASTKRTCDEITSYLRQDGWPALAIHGDKDQRERDWVLNEFRTGNS 408

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
            ++V  ++   G+D+     V   D        +    +  IGR  R   +   I +   
Sbjct: 409 PIMVATDVAARGIDVKGINFVVNYD-----MPGNIEDYVHRIGRTGRAGATGTAISFFTE 463

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
             KS+  ++          +    K NI P+ + +
Sbjct: 464 DNKSLGASL--------ISIMREAKQNI-PEELMK 489


>gi|312881457|ref|ZP_07741251.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370879|gb|EFP98337.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 620

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++ V T++  E L ++L  R  +   +H ++    R   +  ++ G  D+LV 
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            +++  GLD+P    V   D   +       S I  IGR  R     K IL   T    +
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDV-----ESYIHRIGRTGRAGRKGKAILLVRTNQLRM 356

Query: 698 QLAIDETTR 706
              I+  T+
Sbjct: 357 LRTIERVTK 365


>gi|283457475|ref|YP_003362053.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133468|dbj|BAI64233.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 732

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 6/157 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TK+  E++ + L  R      ++ ++    R   +  LR G+ D+LV  ++   
Sbjct: 309 IIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDVAAR 368

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+    LV   D           S +  IGR  R       IL+     K +   I++
Sbjct: 369 GLDVERISLVVNYD-----IPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQIEK 423

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
            TR++ + +       +N    +    ++ + I  ED
Sbjct: 424 ATRQKVEPMHMPTAEAVNETRKQRFAQQITETIESED 460


>gi|224477065|ref|YP_002634671.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421672|emb|CAL28486.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 507

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 81/200 (40%), Gaps = 25/200 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDVYDEINLA---- 578
            T++ SAT     + +    +V+Q ++   +V     E+  +  Q+++ Y  +       
Sbjct: 177 QTMLFSAT-----MPKAIQTLVQQFMKSPKIVKTMNNEM--SDPQIDEYYTIVKELEKFE 229

Query: 579 -------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                    Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  
Sbjct: 230 TFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKND 289

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
           + D+LV  ++   GLDI     V   D       +   S    IGR  R     + + + 
Sbjct: 290 QIDILVATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKKGIAVTFV 344

Query: 691 DTITKSIQLAIDETTRRREK 710
           + I       I++T  RR +
Sbjct: 345 NPIEMDYIRQIEQTNDRRMR 364


>gi|307308978|ref|ZP_07588661.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
 gi|306900612|gb|EFN31225.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 504

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 73/228 (32%), Gaps = 30/228 (13%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             R   L E    L     +   +  +       T++ SAT      E     + + +  
Sbjct: 149 QARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQTLLFSATMPKLIAELAGEYLTDPV-- 206

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI---------------LLTVLTKRMA 595
                   VE+       + V   ++    + L+                L+   TK  A
Sbjct: 207 -------KVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTANPDGLSLIFSRTKHGA 259

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E L ++L     +   +H      +R   ++  R G+  VLV  ++   G+DIP    V 
Sbjct: 260 EKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLVATDVAARGIDIPGVTHVY 319

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
             D           + +  IGR ARN    + I +       +   I+
Sbjct: 320 NYD-----LPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDIE 362


>gi|67539522|ref|XP_663535.1| hypothetical protein AN5931.2 [Aspergillus nidulans FGSC A4]
 gi|74657087|sp|Q5B0J9|DBP2_EMENI RecName: Full=ATP-dependent RNA helicase dbp2
 gi|40738604|gb|EAA57794.1| hypothetical protein AN5931.2 [Aspergillus nidulans FGSC A4]
 gi|259479898|tpe|CBF70542.1| TPA: ATP-dependent RNA helicase dbp2 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5B0J9] [Aspergillus
           nidulans FGSC A4]
          Length = 563

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 80/210 (38%), Gaps = 23/210 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T + SAT    E+ Q     +   I+             +   VE+ S   + + +   
Sbjct: 320 QTCMWSAT-WPKEVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIKH 378

Query: 575 INLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +    + +G + L+   TKR+A+++T +L +       +H + +  ER  ++ + + GK 
Sbjct: 379 LEKIMENRGNKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKS 438

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+ +   V   D     +  +    +  IGR  R       +   T 
Sbjct: 439 PIMVATDVASRGIDVRDITHVINYD-----YPNNSEDYVHRIGRTGRAGAKGTAITFFTT 493

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
             + Q        R    +    K  I+P+
Sbjct: 494 DNAKQA-------RDLVTILSEAKQQIDPR 516


>gi|283856424|ref|YP_162949.2| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|283775425|gb|AAV89838.2| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 506

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 88/253 (34%), Gaps = 16/253 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT  P   +L        +QI         T +    +E+   R++ + + D +
Sbjct: 193 QTLLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSP-RSKKKKLCDML 251

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A++    ++    K     L   L ++   V  +H ++   ER   +   + G+  V
Sbjct: 252 --RAEKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISV 309

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLD+     V   D             I  IGR  R   S   L   T   
Sbjct: 310 LVASDIAARGLDVKGISHVFNFDV-----PTHPDDYIHRIGRTGRGGASGEALTFVTPAD 364

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
              +   E     E     N+K N  P   +E +         E +AT +     ++   
Sbjct: 365 EEAITAIEKLMGVEIPRLGNRKKNTYPSKSEETVSPKQAKPAQEKSATPSPRKAPRKTET 424

Query: 756 SKKKGKAHLKSLR 768
            KK  +  L S+ 
Sbjct: 425 PKKLPEDRLDSVE 437


>gi|170585414|ref|XP_001897479.1| germline helicase protein 1 [Brugia malayi]
 gi|158595158|gb|EDP33731.1| germline helicase protein 1, putative [Brugia malayi]
          Length = 432

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 76/219 (34%), Gaps = 35/219 (15%)

Query: 524 TTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT P              +E+   + + +  + +    V    ++         
Sbjct: 212 QIMLYSATFPLTVATFMQKHMRNPYEINLMEELTLVGVTQYYAYVQEKQKVH-------- 263

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                     Q  + ++   + +  E L + + E      Y+HS +    R  +  D R 
Sbjct: 264 -CLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSRMAQGHRNRVFHDFRK 322

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +LL  G+DI    +V   D     F R+  + +  IGR+ R  +  + +  
Sbjct: 323 GACRNLVCSDLLTRGIDIQAVNVVINFD-----FPRNAETYLHRIGRSGRFGHLGIAINL 377

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
            T           T RR E +L         P+SV  K+
Sbjct: 378 ITYEDRF------TLRRIEAELRTRIA--PIPKSVDPKL 408


>gi|328769192|gb|EGF79236.1| hypothetical protein BATDEDRAFT_35392 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 647

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 31/155 (20%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKR A+ L  +L ++      +H +    ER   ++  R G+  VLV   +   
Sbjct: 442 TLVFVETKRGADMLCNFLIDQRFPATAIHGDRTQREREFALQSFRSGRTPVLVATAVAAR 501

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLDIP    V   D             +  IGR  R  N         I K+        
Sbjct: 502 GLDIPNVTHVVNFD-----LPSDIDDYVHRIGRTGRAGN---------IGKATAF----- 542

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
                     N + N   + + ++++E++     E
Sbjct: 543 ---------FNMEQN---RGIVKELVEILQEANQE 565


>gi|168043479|ref|XP_001774212.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674480|gb|EDQ60988.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 584

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 74/197 (37%), Gaps = 23/197 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT    E+++     +   I          T L+   VE      +   + D I
Sbjct: 325 QTMLFSAT-FPREIQRLASDFLSNYIFLAVGRVGSSTELIVQRVEYVQDADKRSMLMDLI 383

Query: 576 NLAAQ-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK---TLERIEIIRD 627
           +  +      Q    L+ V TK+ A+ L ++L         +H + K   T ER   +R 
Sbjct: 384 HAQSALAPPGQTSLTLVFVETKKGADALEDWLCRMGFPATTIHGDRKVFPTQEREHALRS 443

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            R G   +LV  ++   GLDIP    V   D             +  IGR  R   S V 
Sbjct: 444 FRTGVTPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKSGVA 498

Query: 688 L-YADTITKSIQLAIDE 703
             + +   +S+  ++ E
Sbjct: 499 TAFFNEKDQSLARSLTE 515


>gi|319407442|emb|CBI81093.1| ATP-dependent RNA helicase [Bartonella sp. 1-1C]
          Length = 415

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 86/240 (35%), Gaps = 34/240 (14%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             R   L E    L     N   +   +   +  T + SAT     + +   ++ + ++R
Sbjct: 154 QSRFFILDEADRMLDMGFINDVRQIARFLNEKCQTALFSAT-----MSKEVNVLADNLLR 208

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAE 596
                   +E+ S  T   ++   +   +    +              +++ + TK  A+
Sbjct: 209 KPV----KIEVVSQGTTAAEITQVLYCVSTSEKKSILSKLLTNPALTSVIVFIRTKHGAD 264

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            +   L +    V  +H       R   +++ R G   VLV  ++   G+DIP    V  
Sbjct: 265 SVARSLTKAGYSVATIHGNKSQNARQCALKNFREGLVRVLVATDIAARGIDIPGISHVIN 324

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQL-AIDETTR----RREK 710
            D        +  S +  IGR  RN  S   I + D   + ++L AI+   R    R+E 
Sbjct: 325 YD-----LPDNAESYVHRIGRTGRNGASGDAITFFDEKIEQVRLCAIERLIRMKLKRKEI 379


>gi|309774568|ref|ZP_07669594.1| ATP-dependent RNA helicase, DEAD/DEAH family [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917683|gb|EFP63397.1| ATP-dependent RNA helicase, DEAD/DEAH family [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 585

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 74/181 (40%), Gaps = 30/181 (16%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             T++ SAT  +  L   +    + +          VEI+S++  + D  ++I   A +G
Sbjct: 179 HQTVLFSATWPAEILRITKQFQNDPV---------RVEIKSSQRTI-DTVEQIYYEAPRG 228

Query: 583 LR---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            +                ++   TK+M ++L + L + +I+   +H ++K   R  ++  
Sbjct: 229 KKANALRVLLSHYDPDLCMIFCNTKKMVDELCDELNKHDIKAISLHGDMKQEFRSRVMEQ 288

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            R G + +L+  ++   G+D+ +  LV   D       +     I  +GR  R     + 
Sbjct: 289 FRSGNYPILIATDVAARGIDVDDIDLVVNFD-----IPQDNEYYIHRVGRTGRAGKKGLA 343

Query: 688 L 688
           +
Sbjct: 344 I 344


>gi|239918016|ref|YP_002957574.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
 gi|239839223|gb|ACS31020.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
          Length = 611

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 15/176 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------EDVY 572
              T++ SAT PG       + +     IR     D  +  +  R  V        +++ 
Sbjct: 223 VRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMDKDELV 282

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                A  +G R ++   TKR A  + + L  R      +H ++    R + +R  R GK
Sbjct: 283 ARALQAEGRG-RTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAFRNGK 341

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            D+LV  ++   G+D+ +   V    A        + + +  +GR  R  N  V +
Sbjct: 342 VDILVATDVAARGIDVDDVTHVFNFQA-----PEDEKTYVHRVGRTGRAGNKGVAV 392


>gi|195499159|ref|XP_002096830.1| bel [Drosophila yakuba]
 gi|194182931|gb|EDW96542.1| bel [Drosophila yakuba]
          Length = 792

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 64/177 (36%), Gaps = 17/177 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE----------IRSARTQVEDVYD 573
            T++ SAT      E     +   I    G V    E              R+ + D+  
Sbjct: 484 QTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLS 543

Query: 574 EINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            I    +  +    L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R  R G
Sbjct: 544 SIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSG 603

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              +LV   +   GLDIP    V   D             +  IGR  R  N  V  
Sbjct: 604 DCPILVATAVAARGLDIPHVKHVINFD-----LPSDVEEYVHRIGRTGRMGNLGVAT 655


>gi|167035770|ref|YP_001671001.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166862258|gb|ABZ00666.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 443

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 85/260 (32%), Gaps = 34/260 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L +   ++++           Q+  +   +  R     + GF   L S     P  
Sbjct: 131 TPGRLLDLFRQNAV--------KFNQVQTLVLDEADRM---LDLGFAEELQSVYAALP-- 177

Query: 515 FEEWNCLRPTTIVVSATPGSWE-----LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV- 568
                  +  T++ SAT          L     + +E   R          +     +  
Sbjct: 178 ------RKRQTLLFSATFSDQIRVLAGLALNDPLSIEVSPRNATATSVKQWLVPVDKKRK 231

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           ED++  +    Q+  ++L+   T+   + L + L    +    +H +     R   +   
Sbjct: 232 EDLFCHLL-RKQRWTQVLVFAKTRNGVDQLVQRLLAEGVNADGIHGDRPQATRQRALDSF 290

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           +  +  VLV  ++   GLDI +  LV  LD             +  IGR  R  N    I
Sbjct: 291 KAREVQVLVATDVAARGLDIDDLPLVVNLDLPIV-----AEDYVHRIGRTGRAGNKGEAI 345

Query: 688 LYADTITKSIQLAIDETTRR 707
                    +  AI+  TR+
Sbjct: 346 SLVCADEVQLLAAIEVLTRQ 365


>gi|78224228|ref|YP_385975.1| ATP-dependent RNA helicase RhlB [Geobacter metallireducens GS-15]
 gi|78195483|gb|ABB33250.1| ATP-dependent RNA helicase RhlB [Geobacter metallireducens GS-15]
          Length = 438

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 96/255 (37%), Gaps = 30/255 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL--R 514
            P  L +Y+ +           ++ +I  +   +  R     + GF      D R +  R
Sbjct: 131 TPGRLIDYLKQKVY--------SLKEIEVLVIDEADRMF---DMGFI----ADLRFILRR 175

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGI--IVEQI-IRPTGLVDPPVEIRSAR-TQVED 570
              ++      ++ SAT     +E       + E++ + P  +    VE       + E 
Sbjct: 176 LPPFDKR--QNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEK 233

Query: 571 VYDEINLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
               + L  ++G  R ++ V TKR AE L E L   +   R +  +V+  +R+ I+ D +
Sbjct: 234 FPLLLGLLRKKGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRMRILEDFK 293

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVIL 688
            GK  +++  ++   GL I     V   D       +     +  IGR AR     K I 
Sbjct: 294 NGKLPIMIATDVASRGLHIDGVSHVINYD-----LPQDAEDYVHRIGRTARAGAEGKAIS 348

Query: 689 YADTITKSIQLAIDE 703
            AD        AI E
Sbjct: 349 MADEDGAFHLEAIHE 363


>gi|319893030|ref|YP_004149905.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162726|gb|ADV06269.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323463915|gb|ADX76068.1| DEAD-box ATP dependent RNA helicase, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 495

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 75/198 (37%), Gaps = 27/198 (13%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA--- 578
            T++ SAT      EL Q          R    ++  +    +  Q+++ Y  +      
Sbjct: 177 QTMLFSATMPKAIQELVQKFMKSP----RIIKTMNNEI----SDPQIDEYYTIVKELEKF 228

Query: 579 --------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                     Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  + 
Sbjct: 229 DTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKN 288

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
            + D+LV  ++   GLDI     V   D       +   S    IGR  R     + + +
Sbjct: 289 DQIDILVATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKHGIAVTF 343

Query: 690 ADTITKSIQLAIDETTRR 707
            + I       I++T RR
Sbjct: 344 VNPIEMDYIRQIEQTNRR 361


>gi|297294301|ref|XP_002804411.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 [Macaca
           mulatta]
          Length = 705

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 521 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 580

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 581 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 632


>gi|109077270|ref|XP_001100045.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 3
           [Macaca mulatta]
 gi|297294298|ref|XP_001099856.2| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 1
           [Macaca mulatta]
          Length = 725

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 541 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 600

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 601 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 652


>gi|75076134|sp|Q4R5S7|DDX4_MACFA RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog
 gi|67970411|dbj|BAE01548.1| unnamed protein product [Macaca fascicularis]
          Length = 725

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 541 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 600

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   D        +    +  IGR  R  N+   I + D  + + 
Sbjct: 601 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 652


>gi|312070734|ref|XP_003138283.1| ATP-dependent RNA helicase DHH1 [Loa loa]
 gi|307766556|gb|EFO25790.1| ATP-dependent RNA helicase DHH1 [Loa loa]
          Length = 432

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 76/219 (34%), Gaps = 35/219 (15%)

Query: 524 TTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT P              +E+   + + +  + +    V    ++         
Sbjct: 212 QIMLYSATFPLTVATFMQKHMRNPYEINLMEELTLVGVTQYYAYVQEKQKVH-------- 263

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                     Q  + ++   + +  E L + + E      Y+HS +    R  +  D R 
Sbjct: 264 -CLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSRMAQGHRNRVFHDFRK 322

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +LL  G+DI    +V   D     F R+  + +  IGR+ R  +  + +  
Sbjct: 323 GACRNLVCSDLLTRGIDIQAVNVVINFD-----FPRNAETYLHRIGRSGRFGHLGIAINL 377

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
            T           T RR E +L         P+SV  K+
Sbjct: 378 ITYEDRF------TLRRIEAELRTRIA--PIPKSVDPKL 408


>gi|226947893|ref|YP_002802984.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A2 str.
           Kyoto]
 gi|226840806|gb|ACO83472.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A2 str.
           Kyoto]
          Length = 425

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 69/194 (35%), Gaps = 29/194 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT    E+ +    IV+  IR        VE+    + V+ +  E+    ++  
Sbjct: 182 QNLLFSAT-MPSEITKLVDSIVKDPIR--------VEVTPVSSTVDTITQEVYHVRKKQK 232

Query: 584 R--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           R               L+   TKR A  + + L E  I    +H       R   + + +
Sbjct: 233 RSLLKHLLKDESIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFK 292

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            GK  VLV  ++   G+D+ E   V   +           + +  IGR  R     V I 
Sbjct: 293 EGKIRVLVATDIAARGIDVNELSHVFNYN-----LPDVPETYVHRIGRTGRAGAKGVAIS 347

Query: 689 YADTITKSIQLAID 702
           + D        AI+
Sbjct: 348 FCDIEETKSLKAIE 361


>gi|67619527|ref|XP_667652.1| dead box RNA helicase [Cryptosporidium hominis TU502]
 gi|54658801|gb|EAL37417.1| dead box RNA helicase [Cryptosporidium hominis]
          Length = 480

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 8/130 (6%)

Query: 569 EDVYDEINLAAQQG---LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +   + +    +QG   L  L+   +K  A+ L + L   N+ V  +HS++  ++R  II
Sbjct: 317 DAKIESLRQLIKQGKIMLPTLVFTNSKDDAQRLFKKLMYDNLIVEAIHSDMPKVKRDNII 376

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +  R GK  +L+  +L+  G+D      V   D     F  S ++ I  +GR  R   + 
Sbjct: 377 QRFRTGKIWILICTDLMARGVDFKNVSCVVNYD-----FPHSPSNYIHRVGRCGRAGRTG 431

Query: 686 VILYADTITK 695
             +   T+  
Sbjct: 432 YAITFFTLKD 441


>gi|332233583|ref|XP_003265983.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Nomascus leucogenys]
          Length = 577

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 393 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 452

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
              GLDI     V   D        +    +  IGR  R  N+   I + D
Sbjct: 453 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 498


>gi|332233581|ref|XP_003265982.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Nomascus leucogenys]
          Length = 693

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 509 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 568

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
              GLDI     V   D        +    +  IGR  R  N+   I + D
Sbjct: 569 AARGLDIENVQHVINFD-----LPSTIDEYVHRIGRTGRCGNTGRAISFFD 614


>gi|295394596|ref|ZP_06804815.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972489|gb|EFG48345.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 459

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 16/193 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--------DVY 572
           +  T++ SAT PG       + +     IR T   D      + +  V         ++ 
Sbjct: 182 KRQTMLFSATMPGQVIALARRYMTQPTHIRATQASDTSTTSVNTKQYVYRAHSMDKTELV 241

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +G R ++   TKR A+ LT  L  R  + + +H ++    R + ++  R G 
Sbjct: 242 GRILRAEGRG-RTIIFARTKRTADRLTGELKARGFQAQALHGDLNQHMREKALKRFRDGT 300

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
            DVLV  ++   G+DI +   V               + +  IGR  R  N+ + +   D
Sbjct: 301 TDVLVATDVAARGIDIDDVTHVINY-----QCPEDDKTYVHRIGRTGRAGNTGIAVTLID 355

Query: 692 TITKSIQLAIDET 704
               +    I+ T
Sbjct: 356 WEDVAKWKLINRT 368


>gi|291438689|ref|ZP_06578079.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291341584|gb|EFE68540.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 689

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 23/226 (10%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +D        A +  R ++ V T+  A+ + E L +   +   +H  +    R   + D 
Sbjct: 331 KDKAPVTAAIASRKGRTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADF 390

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G  +VLV  ++   G+ +    LV  +D             +   GR AR   +  ++
Sbjct: 391 KDGYVNVLVATDVAARGIHVDGIDLVLNVDP-----AGDHKDYLHRAGRTARAGRTGTVV 445

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE-DAATTNIS 747
                 +           RR+      +   ++      +     DP L E   A +   
Sbjct: 446 SLALPHQ-----------RRQIFRLM-EDAGVDAMRHIIQGGAAFDPELAEITGARSMTE 493

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           + A+    + ++ +  +  L K++  A        AA +RDE  RL
Sbjct: 494 VQAESAGNAAQQAEREVAQLTKELERAQR-----RAAELRDEADRL 534


>gi|251796145|ref|YP_003010876.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247543771|gb|ACT00790.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 535

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 19/195 (9%)

Query: 524 TTIVVSAT--PGSWELEQ-------CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT  P   +L Q          +I +Q+  PT +     E+   + + E +   
Sbjct: 177 QTLLFSATMPPNIQKLAQQFLKNPEHVAVISKQVTAPT-IQQNYFEVHERQ-KFEALCRL 234

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +++  +     ++   TKR  ++L+E L +R      +H ++   +R  ++R  R G  D
Sbjct: 235 LDM--ESPELAIIFGRTKRRVDELSEGLQKRGYTADGLHGDLSQNQRDNVMRKFRDGSID 292

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   GLD+     V   D       +   S +  IGR  R           T  
Sbjct: 293 VLVATDVAARGLDVSGVTHVINFD-----LPQDPESYVHRIGRTGRAGKEGSAYSFVTPR 347

Query: 695 K-SIQLAIDETTRRR 708
           +      I++ TR+R
Sbjct: 348 EVDHLHFIEKVTRQR 362


>gi|163789554|ref|ZP_02183992.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
 gi|159875086|gb|EDP69152.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
          Length = 483

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 67/169 (39%), Gaps = 13/169 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQ-----IIRPTGLVDPPVEIRSARTQVEDVYDEINL- 577
            T++ SAT    E+E+     ++Q     +I  T L  P +   S + Q +    ++   
Sbjct: 180 QTLLFSAT-MPKEIERIASFYMKQDKQSIVIETTELSKPKIIQSSVKVQEDKKEQQLLDL 238

Query: 578 -AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +     ++   T+    +L  +L +  + +  +H  +   +R  ++ D R G+F  L
Sbjct: 239 LTVENADSCMIFCNTQEAVNNLYTFLNKAGLPIDKIHGGMVQEDRFSVMDDFRQGRFRYL 298

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           V  ++   G+DI     V   D   E     K S +   GR  R   + 
Sbjct: 299 VATDVAARGIDIENVTHVVNFDVPVE-----KESFVHRTGRTGRAGKTG 342


>gi|71280589|ref|YP_270076.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71146329|gb|AAZ26802.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 432

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 83/226 (36%), Gaps = 41/226 (18%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPT-GLVDPPVEIRSARTQVEDVYDEIN--L 577
            +  T++ SAT              EQ+   T  L++ P+EI   + Q  D    +    
Sbjct: 191 KKKQTLLFSAT------------FPEQVTTLTQELLNNPIEI---QLQSADASTLVQRVF 235

Query: 578 AAQQGLRI---------------LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
              +G +                L+ V  K   E L E L +R I     H +    ER 
Sbjct: 236 TVNKGEKTAVLAHLIQQEQWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERS 295

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
            ++   + G  +VL+  ++   GLDI +  +V   +       RS +  +  IGR+ R  
Sbjct: 296 RVLDGFKAGDIEVLIATDIAARGLDIEKLPVVINFN-----LPRSPSDYMHRIGRSGRAG 350

Query: 683 NSKVILYADTITKSIQLA-IDETTRRREK--QLEHNKKHNINPQSV 725
              + +           + I++  + R K  Q+E  +   I   S+
Sbjct: 351 EVGLAISLIDHEDYHHFSVIEKKNKFRLKREQVEGFEAAEITGDSI 396


>gi|313500721|gb|ADR62087.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida BIRD-1]
          Length = 443

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 85/260 (32%), Gaps = 34/260 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L +   ++++           Q+  +   +  R     + GF   L S     P  
Sbjct: 131 TPGRLLDLFRQNAV--------KFNQVQTLVLDEADRM---LDLGFAEELQSVYAALP-- 177

Query: 515 FEEWNCLRPTTIVVSATPGSWE-----LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
                  +  T++ SAT          L     + +E   R          +     + +
Sbjct: 178 ------RKRQTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRK 231

Query: 570 -DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            D++  +    Q+  ++L+   T+   + L E L    +    +H +     R   +   
Sbjct: 232 ADLFCHLL-RKQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSF 290

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           +  +  VLV  ++   GLDI +  LV  LD             +  IGR  R  N    I
Sbjct: 291 KAREVQVLVATDVAARGLDIDDLPLVVNLDLPIV-----AEDYVHRIGRTGRAGNKGEAI 345

Query: 688 LYADTITKSIQLAIDETTRR 707
                    +  AI+  TR+
Sbjct: 346 SLVCADEVQLLAAIEVLTRQ 365


>gi|221107786|ref|XP_002161873.1| PREDICTED: vasa-related protein CnVAS1 [Hydra magnipapillata]
          Length = 797

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 66/214 (30%), Gaps = 29/214 (13%)

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTI-------VVSATPGSWELEQCQGIIVEQIIRPT 552
             F +P   D   L F          +        V  T G               +  +
Sbjct: 531 NDFDMPPKEDRHTLMFSATFPTEIQNLAAEFLNNYVYLTIGKVGGTHSDITQCIMEVEES 590

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
              D  +EI                      R L+ V TKR+A+ L  YL +       +
Sbjct: 591 AKRDKLIEILDTEGT---------------NRNLVFVQTKRLADFLASYLCQNGFHTTSI 635

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H +    +R E + + + G   VL+   +   GLDI +   V   D   E         I
Sbjct: 636 HGDRLQQQREEALAEFKAGTQHVLIATAVAARGLDIADVKQVINYDLPDE-----IEEYI 690

Query: 673 QTIGRAARNVNSK--VILYADTITKSIQLAIDET 704
             IGR  R  N    +  +     + +  A+ +T
Sbjct: 691 HRIGRTGRIGNKGKAISFFTRGKDEGLARALVKT 724


>gi|126307666|ref|XP_001371632.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 52
           [Monodelphis domestica]
          Length = 608

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 75/210 (35%), Gaps = 22/210 (10%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           I    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 411 IRDLIKKGFHPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 470

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  +  K + +  
Sbjct: 471 IWVLICTALLARGIDFKGVNLVINYD-----FPTSAVEYIHRIGRTGRAGHKGKAVTFFT 525

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHN-INPQSVK---EKIMEVIDPILLEDAATTNIS 747
              K +  ++         Q           P+ ++   +   +    ++ +     +IS
Sbjct: 526 EDDKPLLRSVANV-----IQQA-----GCPVPEYIRSFHKLPSKQKKKMIKKPLERESIS 575

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
              Q    + KK +  +    ++M   A  
Sbjct: 576 TTPQYFLENAKKEQKIIHQNSEKMTAPAKK 605


>gi|10039329|dbj|BAB13307.1| vasa-related protein CnVAS1 [Hydra vulgaris]
          Length = 797

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 66/214 (30%), Gaps = 29/214 (13%)

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTI-------VVSATPGSWELEQCQGIIVEQIIRPT 552
             F +P   D   L F          +        V  T G               +  +
Sbjct: 531 NDFDMPPKEDRHTLMFSATFPTEIQNLAAEFLNNYVYLTIGKVGGTHSDITQCIMEVEES 590

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
              D  +EI                      R L+ V TKR+A+ L  YL +       +
Sbjct: 591 AKRDKLIEILDTEGT---------------NRNLVFVQTKRLADFLASYLCQNGFHTTSI 635

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H +    +R E + + + G   VL+   +   GLDI +   V   D   E         I
Sbjct: 636 HGDRLQQQREEALAEFKAGTQHVLIATAVAARGLDIADVKQVINYDLPDE-----IEEYI 690

Query: 673 QTIGRAARNVNSK--VILYADTITKSIQLAIDET 704
             IGR  R  N    +  +     + +  A+ +T
Sbjct: 691 HRIGRTGRIGNKGKAISFFTRGKDEGLARALVKT 724


>gi|99080768|ref|YP_612922.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040]
 gi|99037048|gb|ABF63660.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040]
          Length = 445

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 13/188 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINL 577
            T++ SAT    ++ +     ++  +R    P G     V   +       +    +  L
Sbjct: 182 QTMLFSAT-MPKQMNEIANAYLKSPVRIEVTPPGKPAAKVTQSVHFIAKAEKLSLLKELL 240

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +A  G R L+   TK   E L + L +   +   +H      +R   ++  + G+  VLV
Sbjct: 241 SAHDGERTLVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKSQGQRERALKAFKSGEITVLV 300

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
             ++   GLDIP+   V   +           + +  IGR AR   + + + +       
Sbjct: 301 ATDVAARGLDIPDVKYVYNYE-----LPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEIG 355

Query: 697 IQLAIDET 704
              AI +T
Sbjct: 356 DLKAIQKT 363


>gi|307319802|ref|ZP_07599226.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|306894533|gb|EFN25295.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
          Length = 504

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 73/228 (32%), Gaps = 30/228 (13%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             R   L E    L     +   +  +       T++ SAT      E     + + +  
Sbjct: 149 QARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQTLLFSATMPKLIAELAGEYLTDPV-- 206

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI---------------LLTVLTKRMA 595
                   VE+       + V   ++    + L+                L+   TK  A
Sbjct: 207 -------KVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTANPDGLSLIFSRTKHGA 259

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E L ++L     +   +H      +R   ++  R G+  VLV  ++   G+DIP    V 
Sbjct: 260 EKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLVATDVAARGIDIPGVTHVY 319

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
             D           + +  IGR ARN    + I +       +   I+
Sbjct: 320 NYD-----LPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDIE 362


>gi|293376735|ref|ZP_06622957.1| ATP-dependent RNA helicase DbpA [Turicibacter sanguinis PC909]
 gi|325845681|ref|ZP_08168964.1| ATP-dependent RNA helicase DbpA [Turicibacter sp. HGF1]
 gi|292644601|gb|EFF62689.1| ATP-dependent RNA helicase DbpA [Turicibacter sanguinis PC909]
 gi|325488282|gb|EGC90708.1| ATP-dependent RNA helicase DbpA [Turicibacter sp. HGF1]
          Length = 479

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 20/192 (10%)

Query: 521 LRPTTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDP-PVEIRSARTQVEDVY 572
            +  T++ SAT            L   Q I +E     T LV+    E+R    +V+ + 
Sbjct: 174 RKRQTMLFSATMPDRIKKLSQHYLTHPQEIKIESPTLTTDLVEHALYEVREQE-KVKLLQ 232

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +    +   R ++   TK   + L   L ++   +  +H  +   ER E +++ ++G+
Sbjct: 233 DLLM--VENPERCMIFCSTKEAVDALYRNLSQKGYPIERLHGGLDQKERFETMKNFKIGR 290

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
           F  LV  ++   G+D+     V   D   E     K S +  IGRA R     K I +A 
Sbjct: 291 FAYLVSTDVAARGIDVSGVSHVINYDLPPE-----KDSFVHRIGRAGRAGQKGKAITFAT 345

Query: 692 TITKSIQLAIDE 703
                 Q  ++E
Sbjct: 346 RFD---QRWLEE 354


>gi|227888879|ref|ZP_04006684.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
           ATCC 33200]
 gi|227850572|gb|EEJ60658.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
           ATCC 33200]
          Length = 484

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 97/259 (37%), Gaps = 19/259 (7%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEI 575
           +  T++ SAT   P     E+         I+   L    ++   +R+   +  D+   +
Sbjct: 174 KHQTLLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRL 233

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L  ++   TKR  ++LT  L  R      +H ++   +R+ +++  R GK D+
Sbjct: 234 IDVQNPDL-AVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDI 292

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   N   + +     
Sbjct: 293 LVATDVAARGLDISGVSHVYNYD-----IPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNE 347

Query: 695 KSIQLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                 I++ T ++   L+     +       +  +K+ E++D  L +     +  +D  
Sbjct: 348 IGYMRTIEQLTHKKMMPLKPPTDEEAFKGQLSAANKKVAELLDSDLSKYTEEASQLLD-- 405

Query: 752 QLSLSKKKGKAHLKSLRKQ 770
               +     A LK L K 
Sbjct: 406 -DYSAIDLVAALLKDLSKD 423


>gi|168067875|ref|XP_001785829.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662518|gb|EDQ49361.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 538

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 78/205 (38%), Gaps = 26/205 (12%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIR--------PTGLVDPPVEIRSARTQVEDVY 572
            +  T++ SAT    E+E      + + +R        PT  V   +E  + + +++ + 
Sbjct: 288 KKHQTLLFSAT-MPEEIEALAQEYLNKPVRVKVGRVSSPTANVTQNLEKITEKEKIDSLL 346

Query: 573 DEINLAAQQGLR-------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
             +     Q L         ++ V  K   +++T+ L E+ ++   +H      ER   +
Sbjct: 347 ALLVDEHSQSLDSNQPPPLTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAAL 406

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RD R G  ++LV  ++   GLD+     V  LD  K     +    +  IGR  R   S 
Sbjct: 407 RDFRKGTTNILVATDVASRGLDVTGVAHVINLDLPK-----TMEDYVHRIGRTGRAGASG 461

Query: 686 VILYADTITK-----SIQLAIDETT 705
                 T         I+ AI E  
Sbjct: 462 RATSFYTERDVFLVAQIRRAITEAE 486


>gi|110680325|ref|YP_683332.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456441|gb|ABG32646.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           denitrificans OCh 114]
          Length = 433

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 73/216 (33%), Gaps = 19/216 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----P 551
            + + GF      D R  +          T++ SAT    ++ +     +   IR    P
Sbjct: 160 QMLDMGFI----HDLR--KIASVIPKERQTMLFSAT-MPKQMNELANSYLRSPIRVEVSP 212

Query: 552 TGLVDPPV--EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
            G     V  E+       +       L   +  R L+   TK  +E L + L +     
Sbjct: 213 PGKAADKVTQEVHFIAKSEKPGLLIEMLDKHRDERALVFGRTKHGSEKLMKSLVKAGYAA 272

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H      +R   I   + G+  VLV  ++   GLDIP+   V   D           
Sbjct: 273 GSIHGNKSQGQRDRAIAAFKSGEIKVLVATDVAARGLDIPDVKHVYNYD-----LPNVPD 327

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDET 704
           + +  IGR AR       +      +  +  AI +T
Sbjct: 328 NYVHRIGRTARAGKDGAAIAFCAPDEMGELKAIQKT 363


>gi|76800822|ref|YP_325830.1| Hef nuclease [Natronomonas pharaonis DSM 2160]
 gi|76556687|emb|CAI48259.1| probable nuclease domain protein/ probable ATP-dependent helicase
           [Natronomonas pharaonis DSM 2160]
          Length = 845

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 76/200 (38%), Gaps = 23/200 (11%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-------HSEVKTLERIEIIRDLRLG 631
            + G R+++   ++  AE LT +L E     R++          +   E+ E +   R G
Sbjct: 369 IEGGERVIVFTESRDTAESLTAFLGEHFETRRFVGQGDKDGSDGMTQTEQKETLDAFRSG 428

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YA 690
           +F+VLV  ++  EGLD+P+  LV   +   +G        IQ  GR  R  + +V++  A
Sbjct: 429 EFEVLVSTSVAEEGLDVPDVDLVLFYEPVPKGIRS-----IQRKGRTGRASDGRVVVLLA 483

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
           +         +     +R ++               + I   I+  + +    +      
Sbjct: 484 EDTRDEAFFWMSRNEEKRMEEELRKL----------KSIEGEIEAEIAQADLGSFAEAPP 533

Query: 751 QQLSLSKKKGKAHLKSLRKQ 770
           +    S+   +   +S   +
Sbjct: 534 EGSEESEHTAEDEAESGEAE 553


>gi|126463236|ref|YP_001044350.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126104900|gb|ABN77578.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 461

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 68/200 (34%), Gaps = 20/200 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQI----- 548
            + + GF       +   +   +  L+  T++ SAT      EL         ++     
Sbjct: 168 QMLDMGFI------HSLRKIARFLPLKRQTLLFSATMPKLIEELAHTYLREPVKVQVAPP 221

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
            +P   +   V       + + +   +    +   + L+   TK  +E L + L     +
Sbjct: 222 GKPVEKIAQGVHFTPQGDKAKLLESYLQKHPR--EQALVFGRTKHGSEKLMKLLVSWGFK 279

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H      +R   + + R G  DVLV  ++   G+DIP    V   D          
Sbjct: 280 AGSIHGNKSQNQRDRTLTEFRDGSLDVLVATDVAARGIDIPGVRHVYNYD-----MPNVP 334

Query: 669 TSLIQTIGRAARNVNSKVIL 688
            + +  IGR AR       +
Sbjct: 335 ENYVHRIGRTARAGAEGSAV 354


>gi|16264922|ref|NP_437714.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
 gi|15141061|emb|CAC49574.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
          Length = 503

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 73/228 (32%), Gaps = 30/228 (13%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             R   L E    L     +   +  +       T++ SAT      E     + + +  
Sbjct: 149 QARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQTLLFSATMPKLIAELAGEYLTDPV-- 206

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI---------------LLTVLTKRMA 595
                   VE+       + V   ++    + L+                L+   TK  A
Sbjct: 207 -------KVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTANPDGLSLIFSRTKHGA 259

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E L ++L     +   +H      +R   ++  R G+  VLV  ++   G+DIP    V 
Sbjct: 260 EKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLVATDVAARGIDIPGVTHVY 319

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
             D           + +  IGR ARN    + I +       +   I+
Sbjct: 320 NYD-----LPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDIE 362


>gi|116628255|ref|YP_820874.1| superfamily II DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116101532|gb|ABJ66678.1| Superfamily II DNA and RNA helicase [Streptococcus thermophilus
           LMD-9]
          Length = 527

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 101/263 (38%), Gaps = 23/263 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           +  T++ SAT     +++     ++      I+   L +  V+    R + ++ +D +  
Sbjct: 174 KRQTLLFSAT-MPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTR 232

Query: 578 A--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ IIRD + G+ D+
Sbjct: 233 LMDVDQPELSIVFGRTKRRVDELTRGLKLRGSRAEGIHGDLDQNKRLRIIRDFKNGQIDI 292

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +
Sbjct: 293 LVATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGQSGQSITFVSPNE 347

Query: 696 SIQLAIDET-TRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
              L I E  T++R K       Q     K  +  + ++    +  D  +  +       
Sbjct: 348 MGYLGIIENLTKKRMKGLKSPTAQEAFQSKKKVALKKIER---DFADEAIRANFDKFKDD 404

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQ 770
                   + ++   ++ SL  Q
Sbjct: 405 AVKLAQEFTPEELALYILSLTVQ 427


>gi|315924965|ref|ZP_07921182.1| DEAD/DEAH family ATP-dependent RNA helicase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621864|gb|EFV01828.1| DEAD/DEAH family ATP-dependent RNA helicase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 550

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 79/209 (37%), Gaps = 22/209 (10%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIR---SARTQVEDVYDEINL 577
            T + SAT   P +   E  Q       I P  +V   +E R       Q  +    +  
Sbjct: 182 QTALFSATMPAPITKMAELYQRDPETVAIAPKNMVAAGIEERYYSIVDGQKFEALTRLL- 240

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +  R L+   TK+  ++LT  L +R      +H +++   R+ ++R    G+  +LV
Sbjct: 241 AVYRPRRALIFCNTKKYVDELTNALQDRGYSADKIHGDMRQEARLAVLRRFAEGRLAILV 300

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   G+D+ +  +V   D        ++   +  IGR  R   S + L         
Sbjct: 301 ATDVAARGIDVDDVDIVFNYDV-----PDNEEYYVHRIGRTGRAGKSGLSLTLARRRD-- 353

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVK 726
                   + R K++    +  I P ++ 
Sbjct: 354 --------QYRLKKITRYTRKPIEPAAIA 374


>gi|268318827|ref|YP_003292483.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
           FI9785]
 gi|262397202|emb|CAX66216.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
           FI9785]
          Length = 484

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 97/259 (37%), Gaps = 19/259 (7%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEI 575
           +  T++ SAT   P     E+         I+   L    ++   +R+   +  D+   +
Sbjct: 174 KHQTLLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRL 233

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L  ++   TKR  ++LT  L  R      +H ++   +R+ +++  R GK D+
Sbjct: 234 IDVQNPDL-AVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDI 292

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   N   + +     
Sbjct: 293 LVATDVAARGLDISGVSHVYNYD-----IPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNE 347

Query: 695 KSIQLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                 I++ T ++   L+     +       +  +K+ E++D  L +     +  +D  
Sbjct: 348 IGYMRTIEQLTHKKMMPLKPPTDEEAFKGQLSAANKKVAELLDSDLSKYTEEASQLLD-- 405

Query: 752 QLSLSKKKGKAHLKSLRKQ 770
               +     A LK L K 
Sbjct: 406 -DYSAIDLVAALLKDLSKD 423


>gi|242279458|ref|YP_002991587.1| transcription-repair coupling factor [Desulfovibrio salexigens DSM
           2638]
 gi|242122352|gb|ACS80048.1| transcription-repair coupling factor [Desulfovibrio salexigens DSM
           2638]
          Length = 1149

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 98/242 (40%), Gaps = 28/242 (11%)

Query: 177 TGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEA 236
           +G G     A  + +     +++AP        YSE K      A+    S  +  Q   
Sbjct: 23  SGHGTQAFTAHNLHSRGESVVLVAPGARE----YSELK------ALLTLFSRNELEQKGK 72

Query: 237 YVPRTDT-------YIEKESSINEQIDRMRHSATRSL-LERNDCIVVSSVSCIYGIGSVE 288
            VP  +        Y+ K  + ++  +  R +A  +L       +++++ + +    S +
Sbjct: 73  VVPSWERDWVFLPPYLSKNPAASDWAE--RWAALHALTRGGKQSVLMTADNLLPKWPSPD 130

Query: 289 SYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHLEDVA 347
                 + L  G+ ++ + L+   V   Y R  +    G   + GD ++I+ P +  D+ 
Sbjct: 131 VLENNYIVLAKGEEMDPELLMEQAVTWGYTRTKLVSGYGEMSMRGDILDIYAPGY--DLP 188

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRL 407
            R+  FG+ +EEI  F P + +   +++ + +   +  +     ++ A     ++L  +L
Sbjct: 189 VRLEFFGDILEEIRVFDPSSQRSKADLDEVTLLPVAPAMLTGNHIDEA-----DKLWTQL 243

Query: 408 IE 409
            +
Sbjct: 244 KK 245



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 14/193 (7%)

Query: 528 VSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
           ++ATP    L+    G+     I    +   PVE          +   +    ++G ++ 
Sbjct: 763 LTATPIPRTLQLSLSGVRSLSTIETPPVDRKPVETALIERDEAMLASVVARELERGGQVF 822

Query: 587 LTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
                 +  E + E++ +     +    H ++      E I      + D+LV   ++  
Sbjct: 823 WVHNRVQGLERVVEFVKKLAPDAKIGMAHGQMTEKNLEETIHKFWHKELDILVATAIIES 882

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    + +  A   G  +    L Q  GR  R+       +A +   S    + E 
Sbjct: 883 GLDFPNANTLIVDQAQMFGLGQ----LYQLRGRVGRSTRQAYAYFAVSSLDS----LSEK 934

Query: 705 TRRREK---QLEH 714
            +RR +   QL++
Sbjct: 935 AKRRMQIILQLDY 947


>gi|114329100|ref|YP_746256.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
 gi|114317274|gb|ABI63334.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
          Length = 402

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 73/198 (36%), Gaps = 25/198 (12%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           +  +++ SAT PG        G + E ++R    V   VE      ++      I    +
Sbjct: 182 KRQSLLFSATMPGEI------GRLAEGLLRNPARVRIAVE-EPTPDRIAQHVHFIESTGK 234

Query: 581 QG-----------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           +             ++++   TK  A  + E+L E  I    +H       R   +   R
Sbjct: 235 RVLLTRLLADRALEKVIVFTRTKHGANRVAEHLEESGIPADAIHGNKSQNARQRALERFR 294

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G+  VLV  ++   G+D+     V   +   E       S +  IGR AR     + I 
Sbjct: 295 SGEARVLVATDIAARGIDVAGVSHVVNFELPNE-----PESYVHRIGRTARAGQRGIAIS 349

Query: 689 YADTITKSIQLAIDETTR 706
           + D   +    AI++ TR
Sbjct: 350 FCDGSERPFLKAIEKLTR 367


>gi|313900312|ref|ZP_07833806.1| ATP-dependent RNA helicase RhlE [Clostridium sp. HGF2]
 gi|312954861|gb|EFR36535.1| ATP-dependent RNA helicase RhlE [Clostridium sp. HGF2]
          Length = 437

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 68/201 (33%), Gaps = 29/201 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            R  T+  SAT    E+ +    ++ + +         +E+  A T VE +   +    +
Sbjct: 174 KRKQTLFFSAT-MPSEIRKLAQSLLHEPVS--------IEVTPASTTVEKIDQSLYYVDK 224

Query: 581 QG--------------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
                              L+   TK  A  L +YL E  +    +H       R + + 
Sbjct: 225 ANKKRLLLKLLQKNRVQNALVFTRTKSNANRLAKYLNENGVTSGVIHGNKSQNARQQALL 284

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             + GK  VLV  ++   G+D+ E   V   D   E         +  IGR  R      
Sbjct: 285 QFKEGKSRVLVATDIAARGIDVQELSHVFNFDIPNE-----AEVYVHRIGRTGRAGRQGC 339

Query: 687 -ILYADTITKSIQLAIDETTR 706
            I ++D         I++  R
Sbjct: 340 AIAFSDCNEAEYVKNIEKLIR 360


>gi|312278882|gb|ADQ63539.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           thermophilus ND03]
          Length = 528

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 100/261 (38%), Gaps = 23/261 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
            T++ SAT     +++     ++      I+   L +  V+    R + ++ +D +    
Sbjct: 176 QTLLFSAT-MPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLM 234

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ IIRD + G+ D++V
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDIMV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +  
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMG 349

Query: 698 QLAIDET-TRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
            L I E  T++R K       Q     K  +  + ++    +  D  +  +         
Sbjct: 350 YLGIIENLTKKRMKGLKPPTAQEAFQSKKKVALKKIER---DFADETIRANFDKFKDDAV 406

Query: 750 AQQLSLSKKKGKAHLKSLRKQ 770
                 + ++   ++ SL  Q
Sbjct: 407 KLAQEFTPEELALYILSLTVQ 427


>gi|113868675|ref|YP_727164.1| ATP-dependent helicase [Ralstonia eutropha H16]
 gi|113527451|emb|CAJ93796.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Ralstonia eutropha H16]
          Length = 520

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 72/195 (36%), Gaps = 16/195 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVED------VYDEIN 576
            T++ SAT            +   +       +   E +R     VED      V   + 
Sbjct: 221 QTLLFSATFSPEIKRLASSYLKHPVTIEVARSNSTNENVRQMVYLVEDGHKQAAVVHLLK 280

Query: 577 LAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             A+QGL  + ++ V +K     L  +L    I    +H +    ER++ +   + G  D
Sbjct: 281 QRAEQGLSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKSGTID 340

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADT 692
            LV  ++   GLDIP+   V   D        S    +  IGR  R   S   + +Y   
Sbjct: 341 ALVATDVAARGLDIPDMPCVVNFDV-----PYSAEDYVHRIGRTGRAGASGDALSIYVPG 395

Query: 693 ITKSIQLAIDETTRR 707
             + +   I++  +R
Sbjct: 396 NDERLLSDIEKLIKR 410


>gi|47207397|emb|CAF90961.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 502

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 69/201 (34%), Gaps = 28/201 (13%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            +       ++ SAT                +E+   + + ++ I +    V    ++  
Sbjct: 285 SFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLKGITQYYAYVTERQKVH- 343

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   + +  E L + + +      Y+H+++    R  
Sbjct: 344 -------CLNTLFSRLQINQSI-IFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRNR 395

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +L   G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 396 VFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 450

Query: 684 SKVILYADTITKSIQ-LAIDE 703
             + +   T         I+E
Sbjct: 451 LGLAINLITSDDRFNLKTIEE 471


>gi|325694070|gb|EGD35988.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK150]
          Length = 523

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVD-QYYIRVKENEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    S ++   ++ SL  Q
Sbjct: 409 AAEF---SPEELAMYILSLTVQ 427


>gi|320590875|gb|EFX03318.1| ATP-dependent RNA helicase dbp3 [Grosmannia clavigera kw1407]
          Length = 541

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 102/251 (40%), Gaps = 24/251 (9%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ +++   V  +HV    +    R        + + GF      D R +  +
Sbjct: 270 TPGRLKDFLADEA---VSLAHVCFAVLDEADR--------MLDTGFE----EDIRQILGQ 314

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
             +  +  T++ +AT  +      QG +V+ +   T  V       +   +V  +  +  
Sbjct: 315 CPDRTQRQTLMFTATWPTSVRGLAQGFMVDPVKITTVEVMDQ---HAKERRVLAIIKQEQ 371

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             A +  RIL+  L K+ A  +  +L  + +RV  +H +++  +R   +   + G+  VL
Sbjct: 372 RGAARNDRILVFCLYKKEAVRVENFLQGQGVRVCSIHGDLRQEQRTRSLEAFKTGQTPVL 431

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITK 695
           V  ++   GLDIPE  LV  +      F  +    +  IGR  R   + + I +     K
Sbjct: 432 VATDVAARGLDIPEVKLVINV-----TFPLTIEDYVHRIGRTGRAGKDGRAITFFTEHDK 486

Query: 696 SIQLAIDETTR 706
           +   ++    R
Sbjct: 487 AHSGSLVNILR 497


>gi|195146268|ref|XP_002014109.1| GL24500 [Drosophila persimilis]
 gi|194103052|gb|EDW25095.1| GL24500 [Drosophila persimilis]
          Length = 799

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 17/177 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE----------IRSARTQVEDVYD 573
            T++ SAT      E     +   I    G V    E           +  R+ + D+  
Sbjct: 484 QTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEQDKRSYLLDLLS 543

Query: 574 EINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            I    +  +    L+ V TK+ A+ L E+LY+ +  V  +H +    ER E +R  R G
Sbjct: 544 SIRDGPEYSKDSLTLIFVETKKGADSLEEFLYQCSHPVTSIHGDRTQKEREEALRCFRSG 603

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              +LV   +   GLDIP    V   D             +  IGR  R  N  V  
Sbjct: 604 DCPILVATAVAARGLDIPHVKHVINFD-----LPSDVEEYVHRIGRTGRMGNLGVAT 655


>gi|149511215|ref|XP_001519332.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
           [Ornithorhynchus anatinus]
          Length = 790

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 96/256 (37%), Gaps = 32/256 (12%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVY- 572
           P T++ SAT   W  +      + +   V+ I + T      VE   I+    Q   V  
Sbjct: 365 PQTLLFSATCPQWVYKVAKKYMKAKYEQVDLIGKLTQKAATTVEHLAIQCRENQRAAVIG 424

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A ++           + +H ++   +R   ++  R G 
Sbjct: 425 DVIQVYSGNQGRAIVFCETKKDATEMA-LNSNIKQEAQALHGDIAQSQREITLKGFRNGV 483

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + + +    
Sbjct: 484 FKVLVATNVAARGLDIPEVDLVIQSSPPKDV-----ESYIHRSGRTGRAGRTGICICFFQ 538

Query: 693 ITKSIQLAIDETTRRREK-QLEH-NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                          RE+ QL +  +K  I  + V    +  I     +DA ++  S+  
Sbjct: 539 P--------------RERCQLRYVEQKSGITFKHVNIPSLVDIIQASSKDAISSLASVPL 584

Query: 751 QQLSLSKKKGKAHLKS 766
           + L   +   K  ++ 
Sbjct: 585 EALEKFRTYAKTLIEE 600


>gi|145300503|ref|YP_001143344.1| ATP-dependent RNA helicase SrmB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853275|gb|ABO91596.1| ATP-dependent RNA helicase SrmB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 407

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 73/202 (36%), Gaps = 18/202 (8%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
             R  T++ SAT     LE+    I+ + +       P  E R   TQ   + D+     
Sbjct: 178 RYRKHTMLFSATLEGAGLEKFANEILNEPVELHAEP-PRSERRPI-TQWVHLADDAAHKL 235

Query: 580 Q---------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                     +  + ++ V T+    +L+  L    I   ++  E++  +R+E IR    
Sbjct: 236 ALLIHILKDPETQKAIVFVRTRERLAELSGQLQAAGIPCAWIRGEMEQSKRVESIRKFHA 295

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+   LV  ++   G+D+P    V   D             +  IGR  R  N    I  
Sbjct: 296 GEVPFLVATDVAARGIDLPNVSHVINYD-----MPYGTDVYVHRIGRTGRAGNRGCAISL 350

Query: 690 ADTITKSIQLAIDE-TTRRREK 710
            +     +   I+  T  R ++
Sbjct: 351 VEAHDMGMVAKIERYTEERLKR 372


>gi|63139086|gb|AAY33860.1| eukaryotic initiation factor 4A [Pennisetum glaucum]
          Length = 414

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 205 YDIFQLLPAKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE 264

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 265 DWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 322

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 323 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 377

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +       +Q  I  
Sbjct: 378 GVAINFVTRDDDRMQFDIQR 397


>gi|282852614|ref|ZP_06261956.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus
           gasseri 224-1]
 gi|282556356|gb|EFB61976.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus
           gasseri 224-1]
          Length = 452

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 98/259 (37%), Gaps = 19/259 (7%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEI 575
           +  T++ SAT   P     E+         I+   L    ++   +R+   +  D+   +
Sbjct: 141 KHQTLLFSATMPKPILRIGEKFMHDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRL 200

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L  ++   TKR  ++LT  L  R      +H ++   +R+ +++  R GK D+
Sbjct: 201 IDVQNPDL-AVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDI 259

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   N   + +     
Sbjct: 260 LVATDVAARGLDISGVSHVYNYD-----IPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNE 314

Query: 695 KSIQLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                 I++ T ++   L+     +       +  +K+ E++D  L +     +  +D  
Sbjct: 315 IGYMRTIEQLTHKKMMLLKPPTDEEAFKGQLSAANKKVTELLDGDLSKYTTEASQLLD-- 372

Query: 752 QLSLSKKKGKAHLKSLRKQ 770
               +     A LK+L K 
Sbjct: 373 -DYSAVDLVAALLKNLSKD 390


>gi|254526904|ref|ZP_05138956.1| DbpA RNA binding domain family protein [Prochlorococcus marinus
           str. MIT 9202]
 gi|221538328|gb|EEE40781.1| DbpA RNA binding domain family protein [Prochlorococcus marinus
           str. MIT 9202]
          Length = 593

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 93/244 (38%), Gaps = 14/244 (5%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
              ++ SAT         ++      E +I+        +  +    Q     D +    
Sbjct: 227 KQMVLFSATMPSEIKNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRIL 286

Query: 580 Q-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +     +++ V TK +   + E L      V  ++ ++   +R   +  L+ G  ++LV 
Sbjct: 287 ELNNEGVIIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVA 346

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLD+    LV   D     F   K +    IGR  R   S   IL+ +   K  
Sbjct: 347 TDVAARGLDVERIKLVVNYD-----FPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHF 401

Query: 698 QLAIDETTRRR--EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
              ++ +TR +  E  +  NK   IN + +++ I  V +  L +D    N S+    L  
Sbjct: 402 LRNLENSTRTKIEEINIPSNKI--INEKRMEKLIDNVNESSLAKDENEENKSLIIDVLDN 459

Query: 756 SKKK 759
            K+K
Sbjct: 460 LKEK 463


>gi|171059208|ref|YP_001791557.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170776653|gb|ACB34792.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 502

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 29/196 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY------DEINL 577
            T++VSAT          G + +QI++        +EI S     E++       D I  
Sbjct: 189 QTVMVSAT-----FAGQVGRLADQILKSD---AKRIEITSHTDNHENIEQQLLWADSIEH 240

Query: 578 AAQ---------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            A+         +  + L+   T+R A++L  +LYE    V  +H  +    R   +  L
Sbjct: 241 KAKLLEHLLTEREMQQALVFTSTQRDADELAAHLYELGHAVAPLHGGMPQGRRSRTLMAL 300

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           R G+  VL+  ++   G+D+P    V        G        +  IGR  R   +   I
Sbjct: 301 RNGEIKVLIATDVAARGIDVPTISHVINF-----GLPMKAEDYVHRIGRTGRAGRTGRAI 355

Query: 688 LYADTITKSIQLAIDE 703
             A+     +   I +
Sbjct: 356 TLAERRDVGMIRRIQQ 371


>gi|114777669|ref|ZP_01452629.1| putative ATP-dependent RNA helicase [Mariprofundus ferrooxydans
           PV-1]
 gi|114551885|gb|EAU54419.1| putative ATP-dependent RNA helicase [Mariprofundus ferrooxydans
           PV-1]
          Length = 415

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 70/189 (37%), Gaps = 10/189 (5%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR----TQVEDVYDEI 575
             +  T+  SAT      +     +  + IR     +  +    +      +++D    +
Sbjct: 177 KKKHQTLFFSATINDEIKKLAYSQVKSEAIRIQVSPEDRIAKNVSHFVMFVEMDDKRFFL 236

Query: 576 NLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +   Q     ++++ V T+  AE +   +         +H +    ER   ++  R G  
Sbjct: 237 DRFLQDHPEGKVIVFVRTRVRAERVVRAMARAGFDTVSIHGDKDQDERATAMQAFRKGDC 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VL+  ++   G+D+P+   V   D  ++    +    +   GR  +  +   I +  + 
Sbjct: 297 RVLIATDVSARGIDVPDVDFVINYDLPEK--PENYVHRVGRTGRGMKLGD--AISFCSSE 352

Query: 694 TKSIQLAID 702
            K +  AI+
Sbjct: 353 EKPLLEAIE 361


>gi|17985987|ref|NP_536783.1| belle [Drosophila melanogaster]
 gi|74947986|sp|Q9VHP0|DDX3_DROME RecName: Full=ATP-dependent RNA helicase bel; AltName: Full=Protein
           belle
 gi|7299061|gb|AAF54262.1| belle [Drosophila melanogaster]
          Length = 798

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 64/177 (36%), Gaps = 17/177 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE----------IRSARTQVEDVYD 573
            T++ SAT      E     +   I    G V    E              R+ + D+  
Sbjct: 489 QTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLS 548

Query: 574 EINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            I    +  +    L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R  R G
Sbjct: 549 SIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSG 608

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              +LV   +   GLDIP    V   D             +  IGR  R  N  V  
Sbjct: 609 DCPILVATAVAARGLDIPHVKHVINFD-----LPSDVEEYVHRIGRTGRMGNLGVAT 660


>gi|321466548|gb|EFX77543.1| hypothetical protein DAPPUDRAFT_321368 [Daphnia pulex]
          Length = 581

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 75/187 (40%), Gaps = 14/187 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK  A++L   L    I V  +H+E   L+R  +++  R G+  VL+   L+  
Sbjct: 386 VLVFVQTKERAKELYTELVYDGINVDVIHAERSQLQRDNVVKSFRSGQIWVLICTELMGR 445

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE 703
           G+D     LV   D     F  S  S I  IGR  R     K I +           I  
Sbjct: 446 GIDFKGVNLVVNYD-----FPPSAISYIHRIGRTGRAGRPGKAITFFTESDAVYLRKIAT 500

Query: 704 TTRRREKQL-EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKA 762
             R    ++ E+  +     +S  +K+   +           +IS +     + +KK + 
Sbjct: 501 VMRNSGCEVPEYMLQMKKTSRSDAKKMARKV-------PTRKSISTEPLPDKIKRKKRER 553

Query: 763 HLKSLRK 769
            + ++RK
Sbjct: 554 IIANVRK 560


>gi|313233924|emb|CBY10092.1| unnamed protein product [Oikopleura dioica]
          Length = 611

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 64/181 (35%), Gaps = 15/181 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIR----SARTQVEDVYDEI 575
            T++ SAT    E++      ++  I  T    G     +  +        ++  + D +
Sbjct: 336 QTLMFSAT-FPKEIQHLARDFLDNYIFLTVGRVGSTSQNITQKVVWVDENDKINFLTDLL 394

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A  Q    ++   TK+ A+ L  YLY+R  R   +H +    ER   ++  R     V
Sbjct: 395 T-ATDQNTCFVVFTETKKGADYLDNYLYDRGFRSTCIHGDRNQREREGALKSFREAVTPV 453

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   +   GLDIP    V   D             +  IGR  R  N  +         
Sbjct: 454 LVATAVAARGLDIPNVRHVINFD-----LPSDIDEYVHRIGRTGRVGNIGLATSFFNDKN 508

Query: 696 S 696
           S
Sbjct: 509 S 509


>gi|11602713|emb|CAC18543.1| translation initiation factor 4A-like protein [Echinococcus
           multilocularis]
          Length = 403

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 22/193 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              +++SAT     LE     + + +        +   G+    V +     + E   D+
Sbjct: 204 TQVVLLSATMPHDILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFETLCDL 263

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   T+R AE L + + + N  V  MH ++   ER EI+R+ R  
Sbjct: 264 YDTLTVT-----QSVIFCNTRRKAEWLADKMCKSNFTVTVMHGDMVQKEREEIMRNFRSS 318

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
           +  VL+  +LL  G+D+ +  +V        G   ++   I  IGR+ R     V I + 
Sbjct: 319 ESRVLITTDLLARGIDVQQVSMVINY-----GLPNNRELYIHRIGRSGRFGRKGVAINFV 373

Query: 691 DTITKSIQLAIDE 703
                 I   I++
Sbjct: 374 KNEDIRILRDIEQ 386


>gi|322711331|gb|EFZ02905.1| ATP-dependent RNA helicase dbp-2 [Metarhizium anisopliae ARSEF 23]
          Length = 545

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 74/191 (38%), Gaps = 16/191 (8%)

Query: 519 NCLRP--TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
             +RP   T++ SAT           ++ +  Q  I    +     +   VE+ S   + 
Sbjct: 309 EQIRPDRQTLMYSATWPKEVRAMAADFQTDFIQVNIGSMDLSANHRITQIVEVVSDMEKR 368

Query: 569 EDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           + +   +    +    +IL+ V TKR+A+D+T +L +       +H + +  ER  ++  
Sbjct: 369 DRMIKHLEQVMENKENKILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQ 428

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + GK  ++V  ++   G+D+     V   D     +  +    I  IGR  R       
Sbjct: 429 FKTGKSPIMVATDVASRGIDVRNITHVLNYD-----YPNNSEDYIHRIGRTGRAGAKGTA 483

Query: 688 LYADTITKSIQ 698
           +   T     Q
Sbjct: 484 ITFFTTDNQKQ 494


>gi|300704701|ref|YP_003746304.1| DEAD/DEAH box helicase [Ralstonia solanacearum CFBP2957]
 gi|299072365|emb|CBJ43703.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum CFBP2957]
          Length = 603

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 9/149 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR A+ L E L E       +H ++    R   +  LR G   +LV  ++  
Sbjct: 295 QAIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNRTLTALRRGHLRILVATDVAA 354

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAID 702
            G+D+P+   V   D  K+         +  IGR  R   S + +       + Q   I+
Sbjct: 355 RGIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGIAINLVNHGDTFQWRRIE 409

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIME 731
               RR   +       + P+   +   E
Sbjct: 410 RFVDRR---INATVVEGLEPKRAPKPRRE 435


>gi|145493274|ref|XP_001432633.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399746|emb|CAK65236.1| unnamed protein product [Paramecium tetraurelia]
          Length = 566

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 11/167 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEINLA 578
            T++ SAT      E  +  +V+ ++   G      ++   EI   + Q E ++  ++  
Sbjct: 306 QTMLFSATLPKKIQEFTKQTLVDPLVINVGRSGQINLNVIQEILYVK-QEEKLHYLLDCL 364

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +    +++    +   +D+ EYL  + + V  +H   +  +R + ++    G+ DVLV 
Sbjct: 365 KKTTPPVVIFSEHQNDVDDINEYLLIKGVEVVGLHGGKQQEDRTKALKQFLNGQKDVLVA 424

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            ++  +GLD P+   V   D  K+       S I  IGR  R   + 
Sbjct: 425 TDVAAKGLDFPDIKHVINYDMPKD-----IESYIHRIGRTGRQGKTG 466


>gi|94400887|ref|NP_001035345.1| ATP-dependent RNA helicase vasa [Apis mellifera]
 gi|83701804|gb|ABC41341.1| vasa protein [Apis mellifera]
          Length = 630

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 85/256 (33%), Gaps = 40/256 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++        V++  V    +  +   +  R     + GF LPS          
Sbjct: 330 TPGRLLDF--------VEKGRVKFSSVQFLVLDEADRM---LDMGF-LPSIEKMVDH--- 374

Query: 517 EWNCLRP----TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV--------DPPVEIRSA 564
               + P     T++ SAT         +  +   +    G+V            E+  A
Sbjct: 375 --ETMVPLGERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYEV--A 430

Query: 565 RTQVEDVYDEINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R + +D+  EI             L+ V  K+ A+ +  +L E N     +H +    +R
Sbjct: 431 RNKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQR 490

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            E + D + G+  +LV   +   GLDI     V   D  K          +  IGR  R 
Sbjct: 491 EEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPK-----GIDEYVHRIGRTGRV 545

Query: 682 VNSK-VILYADTITKS 696
            N      + D    +
Sbjct: 546 GNRGRATSFFDPEEDA 561


>gi|116748890|ref|YP_845577.1| DEAD/DEAH box helicase domain-containing protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697954|gb|ABK17142.1| DEAD/DEAH box helicase domain protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 471

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 68/212 (32%), Gaps = 12/212 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVEDVYDEIN 576
           R   ++  AT         + ++   ++  T   + P E     I       +       
Sbjct: 179 RRQNLLFFATFSDEIKTLAEDLLRSPVLIETERRNTPAESVAQLIHPVDRVRKRELLSFL 238

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           + +    ++L+   TK  A+ LT  L    IR   +HS      R   + D + G   VL
Sbjct: 239 IGSNNWRQVLVFTRTKHGADRLTRQLEHDGIRAAAIHSNKSQATRTRSLADFKHGDVRVL 298

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLDI     V   +             +  IGR  R   S   +   +I + 
Sbjct: 299 VATDIAARGLDIDHLPHVVNFELPSV-----SRDYVHRIGRTGRAERSGTAISLVSIDE- 352

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            +  + E  R   + +         P    + 
Sbjct: 353 -REQLKEIERLLNRAIPREIIKGYEPDPSIKS 383


>gi|195330652|ref|XP_002032017.1| GM26328 [Drosophila sechellia]
 gi|194120960|gb|EDW43003.1| GM26328 [Drosophila sechellia]
          Length = 797

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 64/177 (36%), Gaps = 17/177 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE----------IRSARTQVEDVYD 573
            T++ SAT      E     +   I    G V    E              R+ + D+  
Sbjct: 488 QTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLS 547

Query: 574 EINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            I    +  +    L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R  R G
Sbjct: 548 SIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSG 607

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              +LV   +   GLDIP    V   D             +  IGR  R  N  V  
Sbjct: 608 DCPILVATAVAARGLDIPHVKHVINFD-----LPSDVEEYVHRIGRTGRMGNLGVAT 659


>gi|187476686|ref|YP_784709.1| ATP-dependent RNA helicase [Bordetella avium 197N]
 gi|115421272|emb|CAJ47777.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
          Length = 592

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 77/218 (35%), Gaps = 39/218 (17%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT     L+     + E+++R        +EI   R +  ++   +  A     
Sbjct: 181 QTLLFSAT-----LDGSVARLAEKMMREP----ERIEIAGHRDKHANITQSLLYADDASH 231

Query: 584 R---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +                ++   TKR A+DL + L E+      +H ++   +R   +  L
Sbjct: 232 KMRLLDHLLRDTRLDQAIVFTATKRGADDLADRLSEQGFSAAALHGDMNQRQRTRTLTQL 291

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G+  VLV  ++   G+D+         D             +  IGR  R     +  
Sbjct: 292 QRGQVRVLVATDVAARGIDVQGISHAVNFD-----LPLQAEDYVHRIGRTGRAGRDGLAY 346

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
                          + R + +++EH     I P+++ 
Sbjct: 347 TLAV----------HSERHKVRRIEHYIGQTITPETIA 374


>gi|327489488|gb|EGF21281.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1058]
          Length = 523

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGIKFMKEPEHVKIAAKELTTELVD-QYYIRVKENEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    S ++   ++ SL  Q
Sbjct: 409 AAEF---SPEELAMYILSLTVQ 427


>gi|238897336|ref|YP_002923013.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259585614|sp|C4K8M8|RHLB_HAMD5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|229465091|gb|ACQ66865.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 422

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 68/335 (20%), Positives = 115/335 (34%), Gaps = 58/335 (17%)

Query: 422 LEQRITYDLEMLET-----TGSCQSIENYSRYLTGRNPGE-----PPPTLFEYIPEDSLL 471
           L  +I  D E L        G     + Y + L     G       P  + +Y  ++ + 
Sbjct: 96  LAIQIYTDAETLSQFTSLKMGLAYGGDGYDKQLKILESGVDILIGTPGRIIDYAKQNFI- 154

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
                H+   Q+  +   D      + + GF      D R L        +   ++ SAT
Sbjct: 155 -----HLNALQVIVLDEADR-----MYDLGFI----KDIRWLFRRMPPAEKRLNMLFSAT 200

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQV---------EDVYDEINLAA 579
                 E       EQ+  P       +E+   +   +Q+         ED    +    
Sbjct: 201 LSYRVRELS----FEQMNHP-----EYIEVEPLQKIGSQIQEELFYPSNEDKMRLLQTLI 251

Query: 580 QQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           ++    R ++   TK+  ED+  +L     RV  +  +V   +RI+I+ D   G  D+LV
Sbjct: 252 EEEWPDRCIIFANTKQRCEDIWGHLVADGHRVGLLTGDVAQRKRIQILDDFSKGYLDILV 311

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GL IP+   V   D        +    I  IGR  R       I  A     S
Sbjct: 312 ATDVAARGLHIPKVTHVFNYD-----LPENVEDYIHRIGRTGRAGEKGYSISLACEAFAS 366

Query: 697 IQLAIDETTRRREKQLEHNKKHNIN----PQSVKE 727
               I+  T  R    E+NK+  +     P+ ++ 
Sbjct: 367 HLSTIEACTGHRIPTSEYNKEALLTDLPQPKRLQR 401


>gi|212637255|ref|YP_002313780.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212558739|gb|ACJ31193.1| Helicase:DbpA, RNA-binding:DEAD/DEAH box helicase [Shewanella
           piezotolerans WP3]
          Length = 611

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 69/194 (35%), Gaps = 11/194 (5%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINL 577
            +    + SAT            + E +   I  T      +E R  +    +  + +  
Sbjct: 179 KQRQLALFSATMPEQIKRVANKYLSEPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVR 238

Query: 578 A--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               ++   I++ V T+    +L E L  R      +H ++    R   +  L+ GK D+
Sbjct: 239 VLEVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDI 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           ++  ++   GLD+   G V   D           + +  IGR  R   +   IL+     
Sbjct: 299 IIATDVAARGLDVERIGHVVNYD-----IPYDTEAYVHRIGRTGRAGRTGMAILFVTHRE 353

Query: 695 KSIQLAIDETTRRR 708
             +   I+  T+ R
Sbjct: 354 MRMLRTIERATKSR 367


>gi|167622568|ref|YP_001672862.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167352590|gb|ABZ75203.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 625

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 66/194 (34%), Gaps = 12/194 (6%)

Query: 521 LRPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
                 + SAT          +     V   I  T      +E R  +    +  + +  
Sbjct: 179 KTRQLALFSATMPEQIKRVANKYLDNPVHVKIAATTSTVETIEQRFVQVSQHNKLEALVR 238

Query: 578 A--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               ++   I++ V T+    +L E L  R      +H ++    R   I  L+ G+ D+
Sbjct: 239 VLEVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIDQLKRGQLDI 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           ++  ++   GLD+   G V   D           + +  IGR  R   +   IL+     
Sbjct: 299 IIATDVAARGLDVERIGHVVNYD-----IPYDTEAYVHRIGRTGRAGRTGMAILFVTHRE 353

Query: 695 KSIQLAIDE-TTRR 707
             +   I+  T  R
Sbjct: 354 MRMLRTIERATNSR 367


>gi|147821400|emb|CAN63495.1| hypothetical protein VITISV_011670 [Vitis vinifera]
          Length = 757

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 7/138 (5%)

Query: 568 VEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           ++ +  ++     +     L+ V TKR  + L ++L    +    +H +   +ER   ++
Sbjct: 517 MDLLQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERERAMK 576

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK- 685
             + G   ++V  ++   GLDIP    V   D  K     +    +  IGR  R   S  
Sbjct: 577 SFKSGATPIMVATDVAARGLDIPHVAHVINFDLPK-----AIDDYVHRIGRTGRAGKSGL 631

Query: 686 VILYADTITKSIQLAIDE 703
              + +    S+  ++ E
Sbjct: 632 ATAFFNDGNLSLAKSLVE 649


>gi|26991447|ref|NP_746872.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|24986522|gb|AAN70336.1|AE016675_6 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
          Length = 443

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 85/260 (32%), Gaps = 34/260 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L +   ++++           Q+  +   +  R     + GF   L S     P  
Sbjct: 131 TPGRLLDLFRQNAV--------KFNQVQTLVLDEADRM---LDLGFAEELQSVYAALP-- 177

Query: 515 FEEWNCLRPTTIVVSATPGSWE-----LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
                  +  T++ SAT          L     + +E   R          +     + +
Sbjct: 178 ------RKRQTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRK 231

Query: 570 -DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            D++  +    Q+  ++L+   T+   + L E L    +    +H +     R   +   
Sbjct: 232 ADLFCHLL-RKQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSF 290

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           +  +  VLV  ++   GLDI +  LV  LD             +  IGR  R  N    I
Sbjct: 291 KAREVQVLVATDVAARGLDIDDLPLVVNLDLPIV-----AEDYVHRIGRTGRAGNKGEAI 345

Query: 688 LYADTITKSIQLAIDETTRR 707
                    +  AI+  TR+
Sbjct: 346 SLVCADEVQLLAAIEVLTRQ 365


>gi|297193946|ref|ZP_06911344.1| transcriptional-repair coupling factor [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152012|gb|EFH31470.1| transcriptional-repair coupling factor [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 1070

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 12/142 (8%)

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSC-----IYGIGSVESYSQMIVQLKIGDSVEQKELL 309
           + R+ H +          +VV+ V       + G+G +E        L+ G   +  +++
Sbjct: 2   LRRLAHPSADDPSTGPVRVVVAPVRSVLQPQVKGLGDLEPV-----SLRTGQQADLNDVV 56

Query: 310 SSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ 369
             L    Y R ++   RG F V G  +++FP   E+   RV  +G+D+EEI  F     +
Sbjct: 57  EGLAAAAYSRVELVEKRGEFAVRGGILDVFPP-TEEHPLRVEFWGDDVEEIRYFKVADQR 115

Query: 370 KIRNVET-IKIYANSHYVTPRP 390
            +   E  +        +    
Sbjct: 116 SLEIAEHGLWAPPCRELLLTTE 137



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 69/202 (34%), Gaps = 19/202 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD-EINLAAQQGL 583
            + +SATP    LE     I E     + +  PP E     T V    + +I  A ++ L
Sbjct: 671 VLTMSATPIPRTLEMAVTGIREM----STITTPPEERHPVLTFVGPYEEKQIGAAVRREL 726

Query: 584 ----RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLV 637
               ++          +     L E     R    H ++      +++ D    KFDVLV
Sbjct: 727 LREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLV 786

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + +   D  G  +    L Q  GR  R+       +     K  
Sbjct: 787 STTIVESGIDIANANTLIVERGDNFGLSQ----LHQLRGRVGRSRERGYAYFLYPPEKP- 841

Query: 698 QLAIDETTRRREKQLEHNKKHN 719
              + ET   R   +  + +  
Sbjct: 842 ---LTETAHERLATIAQHTEMG 860


>gi|215426299|ref|ZP_03424218.1| transcription-repair coupling factor mfd [Mycobacterium
           tuberculosis T92]
 gi|289749550|ref|ZP_06508928.1| transcription-repair coupling factor [Mycobacterium tuberculosis
           T92]
 gi|289690137|gb|EFD57566.1| transcription-repair coupling factor [Mycobacterium tuberculosis
           T92]
          Length = 571

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 67/379 (17%), Positives = 126/379 (33%), Gaps = 50/379 (13%)

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
            L +GD      +++ LV+  Y R D+   RG F V G  ++IF +   +   RV  +G+
Sbjct: 12  TLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIF-APTAEHPVRVEFWGD 70

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           +I E+  F     + I  ++   + A +             + +  E             
Sbjct: 71  EITEMRMFSVADQRSIPEIDIHTLVAFA-----------CRELLLSEDVRARAAQLAARH 119

Query: 416 LLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDE 475
                 +    +  L  L    +   +E     L      +    L + +P+ + + V +
Sbjct: 120 PAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWS----DGHALLTDQLPDGTPVLVCD 175

Query: 476 S---HVTIPQISGMYRGDFHRKATLAEYG-FRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
                     +    R       ++A  G     + +D   L    +  L       +A 
Sbjct: 176 PEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQLGGSGFVEL-DQVRAAAAR 234

Query: 532 PGS--WELEQ-CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ-GLRILL 587
            G   W L Q      +E  +R           R  +  +++++  +       G   L+
Sbjct: 235 TGHPWWTLSQLSDESAIELDVRAAPSA------RGHQRDIDEIFAMLRAHIATGGYAALV 288

Query: 588 ---TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
              T    R+ E L+E             S+      ++  +  + G   VL G   LR+
Sbjct: 289 APGTGTAHRVVERLSE-------------SDTPAGM-LDPGQAPKPGVVGVLQGP--LRD 332

Query: 645 GLDIPECGLVAILDADKEG 663
           G+ IP   LV I + D  G
Sbjct: 333 GVIIPGANLVVITETDLTG 351


>gi|198425852|ref|XP_002130131.1| PREDICTED: similar to p68 RNA helicase isoform 1 [Ciona
           intestinalis]
 gi|198425854|ref|XP_002130146.1| PREDICTED: similar to p68 RNA helicase isoform 2 [Ciona
           intestinalis]
          Length = 585

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 14/153 (9%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + +EI   A+   + ++   TKR  + LT  +         +H +    ER  ++ + R 
Sbjct: 352 LMEEIMGEAEN--KTIIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQPERDWVLNEFRT 409

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           GK  +LV  ++   GLD+ +   V   D     F       I  IGR AR   +      
Sbjct: 410 GKSPILVATDVASRGLDVSDIKFVINFD-----FPNQCEDYIHRIGRTARANQTGTAYTF 464

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            T   + Q        +   ++    K  INP+
Sbjct: 465 FTQANAKQC-------KDLIEILKEAKQQINPR 490


>gi|195572505|ref|XP_002104236.1| GD20854 [Drosophila simulans]
 gi|194200163|gb|EDX13739.1| GD20854 [Drosophila simulans]
          Length = 784

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 64/177 (36%), Gaps = 17/177 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE----------IRSARTQVEDVYD 573
            T++ SAT      E     +   I    G V    E              R+ + D+  
Sbjct: 475 QTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLS 534

Query: 574 EINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            I    +  +    L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R  R G
Sbjct: 535 SIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSG 594

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              +LV   +   GLDIP    V   D             +  IGR  R  N  V  
Sbjct: 595 DCPILVATAVAARGLDIPHVKHVINFD-----LPSDVEEYVHRIGRTGRMGNLGVAT 646


>gi|329666667|gb|AEB92615.1| putative RNA helicase [Lactobacillus johnsonii DPC 6026]
          Length = 479

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 97/259 (37%), Gaps = 19/259 (7%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEI 575
           +  T++ SAT   P     E+         I+   L    ++   +R+   +  D+   +
Sbjct: 169 KHQTLLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRL 228

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L  ++   TKR  ++LT  L  R      +H ++   +R+ +++  R GK D+
Sbjct: 229 IDVQNPDL-AVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDI 287

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   N   + +     
Sbjct: 288 LVATDVAARGLDISGVSHVYNYD-----IPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNE 342

Query: 695 KSIQLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                 I++ T ++   L+     +       +  +K+ E++D  L +     +  +D  
Sbjct: 343 IGYMRTIEQLTHKKMMPLKPPTDEEAFKGQLSAANKKVAELLDSDLSKYTEEASQLLD-- 400

Query: 752 QLSLSKKKGKAHLKSLRKQ 770
               +     A LK L K 
Sbjct: 401 -DYSAIDLVAALLKDLSKD 418


>gi|224048550|ref|XP_002190979.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 53
           [Taeniopygia guttata]
          Length = 729

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 91/254 (35%), Gaps = 43/254 (16%)

Query: 496 TLAEYGF---RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
            + + GF    +   +D RP R          T++ SAT         +  +   +I   
Sbjct: 483 RMLDMGFEPQIMKILIDVRPDR---------QTVMTSATWPDGVRRLAKSYLKNPMIVYV 533

Query: 553 GLVDP--------PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           G +D          V +     +   ++  I     +  ++++ V  K  A+DL      
Sbjct: 534 GTLDLAAVSTVQQKVIVIPEEKKRAFMHSFIKSMKPKD-KVIIFVGKKLTADDLASDFGI 592

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           + I V+ +H   +  +R + + D + GK  +LV  +L   GLD+ +   V   D     F
Sbjct: 593 QGIPVQSLHGNREQCDREQALDDFKKGKVRILVATDLASRGLDVHDITHVFNFD-----F 647

Query: 665 LRSKTSLIQTIGRAARNVNSKV---------ILYADTITKSIQLA--------IDETTRR 707
            R+    +  +GR  R   S             +A  +   ++ A        I    R 
Sbjct: 648 PRNIEEYVHRVGRTGRAGRSGEAVTLVTSNDWRFASELIDILERANQVVPDELIAMAERY 707

Query: 708 REKQLEHNKKHNIN 721
           ++ Q+    + +I 
Sbjct: 708 KQSQMRKEIEKDIQ 721


>gi|207725326|ref|YP_002255722.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|206590561|emb|CAQ37523.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
          Length = 633

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 9/149 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR A+ L E L E       +H ++    R   +  LR G   +LV  ++  
Sbjct: 327 QAIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNRTLTALRRGHLRILVATDVAA 386

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAID 702
            G+D+P+   V   D  K+         +  IGR  R   S + +       + Q   I+
Sbjct: 387 RGIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGIAINLVNHGDTFQWRRIE 441

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIME 731
               RR   +       + P+   +   E
Sbjct: 442 RFVDRR---INATVVEGLEPKRSPKPRRE 467


>gi|198453003|ref|XP_002137583.1| GA27302 [Drosophila pseudoobscura pseudoobscura]
 gi|198132172|gb|EDY68141.1| GA27302 [Drosophila pseudoobscura pseudoobscura]
          Length = 800

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 17/177 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE----------IRSARTQVEDVYD 573
            T++ SAT      E     +   I    G V    E           +  R+ + D+  
Sbjct: 485 QTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEQDKRSYLLDLLS 544

Query: 574 EINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            I    +  +    L+ V TK+ A+ L E+LY+ +  V  +H +    ER E +R  R G
Sbjct: 545 SIRDGPEYSKDSLTLIFVETKKGADSLEEFLYQCSHPVTSIHGDRTQKEREEALRCFRSG 604

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              +LV   +   GLDIP    V   D             +  IGR  R  N  V  
Sbjct: 605 DCPILVATAVAARGLDIPHVKHVINFD-----LPSDVEEYVHRIGRTGRMGNLGVAT 656


>gi|328945532|gb|EGG39683.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1087]
          Length = 523

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 96/262 (36%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVD-QYYIRVKENEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADENIHSNFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    S ++   ++ SL  Q
Sbjct: 409 AAEF---SPEELAMYILSLTVQ 427


>gi|254166522|ref|ZP_04873376.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|289596178|ref|YP_003482874.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|197624132|gb|EDY36693.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|289533965|gb|ADD08312.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
          Length = 451

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 18/235 (7%)

Query: 523 PTTIVVSAT--PGSWELEQCQGIIVEQII------RPTGLVDPPVEIRSARTQVEDVYDE 574
              ++ SAT  P    L +      E+II          +    VE+     ++  +   
Sbjct: 174 KQMMLFSATMPPEIISLARRYMKNPEKIILSEDEITAENVAQYYVEV----GEINKIAKL 229

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            +L   +  + L+   T+R  +++ E L +   +   +H +++   R   +   + GK D
Sbjct: 230 SSLLISERGKYLIFCNTRRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKID 289

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTI 693
           +LV  ++   G+D+     V   D             +  IGR  R + + K I +    
Sbjct: 290 ILVSTDVAARGIDVHGITHVVNYDVPLY-----PKDYVHRIGRTGRMDAHGKAITFVTRE 344

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
            K     I++   +R  ++E      I  ++  ++I ++   +         +S 
Sbjct: 345 DKEYFRRIEDFIGKRIPKMEIKNVGKIKERTDYKEISDIFGMVKFNFELKNELSE 399


>gi|2370593|emb|CAA73168.1| translation initiation factor eIF4A II [Xenopus laevis]
          Length = 413

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 82/197 (41%), Gaps = 16/197 (8%)

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSART 566
           F++   +    +++SAT  +  LE  +  + + I        +   G+    + +     
Sbjct: 206 FQKVLSMNAQVVLLSATMPADVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEW 265

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +++ + D          + ++ + T+R  + LTE ++ R+  V  +H ++   ER  I+R
Sbjct: 266 KLDTLCDLYETLTIT--QAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMR 323

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + R G   VL+  +LL  G+D+ +  LV   D        ++ + I  IGR  R     V
Sbjct: 324 EFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTNRENYIHRIGRGGRFGWKGV 378

Query: 687 -ILYADTITKSIQLAID 702
            I       K     I+
Sbjct: 379 AINMVTEDDKRTLKDIE 395


>gi|82545029|ref|YP_408976.1| ATP-dependent RNA helicase SrmB [Shigella boydii Sb227]
 gi|187731766|ref|YP_001881357.1| ATP-dependent RNA helicase SrmB [Shigella boydii CDC 3083-94]
 gi|81246440|gb|ABB67148.1| ATP-dependent RNA helicase [Shigella boydii Sb227]
 gi|187428758|gb|ACD08032.1| ATP-dependent RNA helicase SrmB [Shigella boydii CDC 3083-94]
 gi|320175854|gb|EFW50935.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae CDC 74-1112]
 gi|320186377|gb|EFW61111.1| ATP-dependent RNA helicase SrmB [Shigella flexneri CDC 796-83]
 gi|332092586|gb|EGI97658.1| ATP-dependent RNA helicase srmB [Shigella boydii 3594-74]
          Length = 444

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 91/253 (35%), Gaps = 17/253 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT  G    +  + ++ + + +          +I     + +D+  +  L  
Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DIP+   V   D  + G      + +  IGR AR       +      
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSG-----DTYLHRIGRTARAGRKGTAISLVEAH 355

Query: 695 KSIQLA-----IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
             + L      I+E  + R  +    K    + +   +   +V+     +  A       
Sbjct: 356 DHLLLGKVGRYIEEPIKARVIEELRPKTRTPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415

Query: 750 AQQLSLSKKKGKA 762
            ++     K    
Sbjct: 416 VKKRHRDTKNIGK 428


>gi|324995328|gb|EGC27240.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK678]
          Length = 523

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVD-QYYIRVKENEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    S ++   ++ SL  Q
Sbjct: 409 AAEF---SPEELAMYILSLTVQ 427


>gi|115491279|ref|XP_001210267.1| hypothetical protein ATEG_00181 [Aspergillus terreus NIH2624]
 gi|121743211|sp|Q0D1K3|PRP5_ASPTN RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|114197127|gb|EAU38827.1| hypothetical protein ATEG_00181 [Aspergillus terreus NIH2624]
          Length = 1181

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 89/263 (33%), Gaps = 34/263 (12%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     VE ++    +V P +    E+R+   +   + + + 
Sbjct: 732 QTVLFSATFPRNMEALARKTLNKPVEIVVGGKSVVAPEITQIVEVRNEDKKFVRLLELLG 791

Query: 577 LAAQQGL----RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 792 NLYSSDENEDARALIFVERQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGI 851

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VL+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 852 FPVLIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 904

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K      P+ V++ +   ++ +       +      
Sbjct: 905 --------LTEDQERFSVDIAKALKQSGQKVPEPVQQMVDSFLEKVKAGKEKASASGFGG 956

Query: 751 QQLSLSKKKGKAHLKSLRKQMHL 773
           + L    ++  A       +M  
Sbjct: 957 KGLERLDQERDA------ARMRE 973


>gi|38048047|gb|AAR09926.1| similar to Drosophila melanogaster CG9748 [Drosophila yakuba]
          Length = 159

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 7/119 (5%)

Query: 570 DVYDEINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D+   I    +  +    L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R 
Sbjct: 46  DLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRC 105

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
            R G   +LV   +   GLDIP    V   D             +  IGR  R  N  V
Sbjct: 106 FRSGDCPILVATAVAARGLDIPHVKHVINFD-----LPSDVEEYVHRIGRTGRMGNLGV 159


>gi|313898319|ref|ZP_07831856.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2]
 gi|312956701|gb|EFR38332.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2]
          Length = 585

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 74/181 (40%), Gaps = 30/181 (16%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             TI+ SAT  +  L   +    + +          VEI+SA+  + D  ++I   A +G
Sbjct: 179 HQTILFSATWPAEILRITKEFQNDPV---------RVEIKSAQRTI-DTVEQIYYDAPRG 228

Query: 583 LR---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            +                ++   TK+M ++L + L + NI+   +H ++K   R  ++  
Sbjct: 229 KKANALRVLLSHYDPDLCMIFCNTKKMVDELCDELNKHNIKAISLHGDMKQEFRSRVMEQ 288

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            R G + +L+  ++   G+D+ +  LV   D       +     I  +GR  R     + 
Sbjct: 289 FRSGNYPILIATDVAARGIDVDDIDLVVNFD-----IPQDNEYYIHRVGRTGRAGKKGLA 343

Query: 688 L 688
           +
Sbjct: 344 I 344


>gi|170725001|ref|YP_001759027.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169810348|gb|ACA84932.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 605

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 67/191 (35%), Gaps = 11/191 (5%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
              + SAT          +     V   I  T      +E R  +    +  + +     
Sbjct: 182 QLALFSATMPEQIKRVANKYLDNPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVRVLE 241

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++   I++ V T+    +L E L  R      +H ++    R   +  L+ GK D+++ 
Sbjct: 242 VEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIIIA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLD+   G V   D           + +  IGR  R   +   IL+       +
Sbjct: 302 TDVAARGLDVERIGHVVNYD-----IPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRM 356

Query: 698 QLAIDETTRRR 708
              I+  T+ R
Sbjct: 357 LRTIERATKSR 367


>gi|169860811|ref|XP_001837040.1| ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130]
 gi|116501762|gb|EAU84657.1| ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130]
          Length = 396

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               +++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 196 ATQVVLLSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCD 255

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LTE +   N  V  MH E+   ER  I+ + R 
Sbjct: 256 LYDTLTIT-----QAVIFCNTRRKVDWLTEKMRASNFTVSSMHGEMVQKERDAIMAEFRS 310

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 311 GTSRVLITTDVWARGIDVQQVSLVINYD-----LPANRENYIHRIGRSGRFGRKGVAINF 365

Query: 691 DTITK 695
            T+  
Sbjct: 366 VTVED 370


>gi|45768538|gb|AAH67608.1| Ddx52 protein [Danio rerio]
          Length = 501

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +   A +L   L    I V  +H++    +R  ++   R GK  VL+   LL  
Sbjct: 312 VLVFVQSIDRARELYHELVYEGINVDVIHADRTQQQRDNVVSSFRSGKIWVLICTALLAR 371

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAI 701
           G+D     LV   D     F  S    I  IGR  R  +  K + +     K +  +I
Sbjct: 372 GIDFKGINLVINYD-----FPTSAVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLLRSI 424


>gi|150017770|ref|YP_001310024.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904235|gb|ABR35068.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 524

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 72/203 (35%), Gaps = 26/203 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA----- 578
            T++ SAT    E+++     ++   +   ++   + +      V+  Y EI        
Sbjct: 179 QTMLFSAT-MPEEIKRLAKRYMKSETKHIAILKNAMTV----ATVDQYYYEIKNKDRFET 233

Query: 579 ------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                   +    ++   TKR  ++L E L  R      MH ++   +RI  +R  + G 
Sbjct: 234 LCRILDVDEPTSAIIFCKTKRNVDELVEGLQGRGYTAEGMHGDMNQNQRINTLRKFKEGS 293

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            + L+  ++   G+D+     V   D       +   S +  IGR  R     V     T
Sbjct: 294 LEFLIATDVAARGIDVENVTHVINYD-----LPQDVESYVHRIGRTGRANRKGVAYTLVT 348

Query: 693 ITKSI-----QLAIDETTRRREK 710
             + +     +       RRRE 
Sbjct: 349 AREYMSLKHIEKVTKSKIRRREI 371


>gi|307702062|ref|ZP_07639069.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
 gi|307616549|gb|EFN95739.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
          Length = 521

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVD-QYYIRVKEQEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPASAEEAFQAKKQVALKKIERDFADETIRGNFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    + ++   ++ SL  Q
Sbjct: 409 AAEF---TPEELAMYILSLTVQ 427


>gi|119173770|ref|XP_001239279.1| DEAD/DEAH box RNA helicase [Coccidioides immitis RS]
 gi|118597491|sp|Q1DHB2|PRP5_COCIM RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
          Length = 1197

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 89/252 (35%), Gaps = 28/252 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     VE I+    +V   +    E+R   T+   + + + 
Sbjct: 742 QTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAQEITQIVEVRPENTKFVRLLELLG 801

Query: 577 LA----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                   +  R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 802 NLYSDDNNEDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTIDDFKAGI 861

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VL+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 862 FPVLIATSVAARGLDVKQLKLVINYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 914

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNI--NPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K +    P++V++ +   ++ +       +      
Sbjct: 915 --------LTEEQERYSVDIAKALKQSGQSVPEAVQKMVDSFLEKVKSGKEKASASGFGG 966

Query: 751 QQLSLSKKKGKA 762
           + L    ++  A
Sbjct: 967 KGLERLDQERDA 978


>gi|45361303|ref|NP_989229.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
 gi|38969901|gb|AAH63223.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
 gi|89271852|emb|CAJ81861.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
          Length = 609

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 72/197 (36%), Gaps = 23/197 (11%)

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
            V    G+ EL     I+    +   G  D  + +R        + +EI    ++  + +
Sbjct: 295 YVHINIGALELSANHNILQIVDVCNDGEKDEKL-VR--------LMEEIMS--EKENKTI 343

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           + V TKR  +DLT  L         +H +    ER  ++ + + GK  +L+  ++   GL
Sbjct: 344 VFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIATDVASRGL 403

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           D+ +   V   D     +  S    I  IGR AR+  +       T        I +   
Sbjct: 404 DVEDVKFVINYD-----YPNSSEDYIHRIGRTARSSKTGTAYTFFTPGN-----IKQVND 453

Query: 707 RREKQLEHNKKHNINPQ 723
                +       INP+
Sbjct: 454 --LISVLREANQAINPK 468


>gi|298706995|emb|CBJ29803.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 402

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 77/193 (39%), Gaps = 22/193 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGI--------IVEQIIRPTGLVDPPVEIRSARTQVE---DV 571
              +++SAT     L+  +          +    +   G+    V +     + +   D+
Sbjct: 203 TQVVLISATMPQEVLDMTKKFMNMPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL 262

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TKR  + LT  + E N  V  MH ++   ER  I+ + R G
Sbjct: 263 YDTLTVT-----QAVIFCNTKRKVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSG 317

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
           +  VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I + 
Sbjct: 318 RSRVLIATDVWGRGLDVQQVSLVICYD-----LPNNRELYIHRIGRSGRFGRKGVAINFV 372

Query: 691 DTITKSIQLAIDE 703
            +    I   I++
Sbjct: 373 KSDDVRILRDIEQ 385


>gi|270156904|ref|ZP_06185561.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
           D-4968]
 gi|289164670|ref|YP_003454808.1| ATP-dependent RNA helicase RhlE [Legionella longbeachae NSW150]
 gi|269988929|gb|EEZ95183.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
           D-4968]
 gi|288857843|emb|CBJ11689.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
           NSW150]
          Length = 421

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 12/210 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII------RPTGLVDPPVEIRSARTQVEDVYDEINL 577
             ++ SAT  + E+      I+ Q I      R T +V     +       +       +
Sbjct: 180 QNLMFSAT-FTDEIRSFVKTILNQPIEIDVTPRNTTVVKIKQTVHPVDKNRKAALLSHLI 238

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              +  + L+   TK  A  L + L E  I    +H      +R + + D + G+  +LV
Sbjct: 239 HRNKWNQALVFSKTKHGANKLVKQLAEAQIHAAAIHGNKSQSQRTKALNDFKSGELHILV 298

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT--K 695
             ++   G+DI +   V   D  +          I   GRA     +  ++ AD +   +
Sbjct: 299 ATDIAARGIDIDQLPCVVNFDLPQV--AEDYVHRIGRTGRAGAIGLAISLVSADEVNQLQ 356

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           SI+  I     R E   +   +HN+   ++
Sbjct: 357 SIEKLIQHKLDRIEI-EDFEPQHNVPQTTI 385


>gi|303324443|ref|XP_003072209.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240111919|gb|EER30064.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5, putative
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 1197

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 89/252 (35%), Gaps = 28/252 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     VE I+    +V   +    E+R   T+   + + + 
Sbjct: 742 QTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAQEITQIVEVRPENTKFVRLLELLG 801

Query: 577 LA----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                   +  R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 802 NLYSDDNNEDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTIDDFKAGI 861

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VL+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 862 FPVLIATSVAARGLDVKQLKLVINYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 914

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNI--NPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K +    P++V++ +   ++ +       +      
Sbjct: 915 --------LTEEQERYSVDIAKALKQSGQSVPEAVQKMVDSFLEKVKSGKEKASASGFGG 966

Query: 751 QQLSLSKKKGKA 762
           + L    ++  A
Sbjct: 967 KGLERLDQERDA 978


>gi|163739630|ref|ZP_02147039.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
 gi|161387089|gb|EDQ11449.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
          Length = 458

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 68/196 (34%), Gaps = 29/196 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--- 580
            T++ SAT    ++ +     ++  +R        +E+       + +   ++  A+   
Sbjct: 198 QTMLFSAT-MPKQMNEIANSYLQSPVR--------IEVNPPGKAADKITQSVHFIAKAEK 248

Query: 581 -----------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                      +  R L+   TK   E L + L         +H      +R   +   +
Sbjct: 249 LSLLKELLGAHKDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFK 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVIL 688
            G+  +LV  ++   GLDIP+   V   +           + +  IGR AR   + + + 
Sbjct: 309 SGEVKILVATDVAARGLDIPDVKYVYNYE-----LPNVPDAYVHRIGRTARAGKDGQAVA 363

Query: 689 YADTITKSIQLAIDET 704
           +          AI +T
Sbjct: 364 FCAPDEMGELKAIQKT 379


>gi|163741384|ref|ZP_02148775.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
 gi|161385118|gb|EDQ09496.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
          Length = 458

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 68/196 (34%), Gaps = 29/196 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--- 580
            T++ SAT    ++ +     ++  +R        +E+       + +   ++  A+   
Sbjct: 198 QTMLFSAT-MPKQMNEIANSYLQSPVR--------IEVNPPGKAADKITQSVHFIAKAEK 248

Query: 581 -----------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                      +  R L+   TK   E L + L         +H      +R   +   +
Sbjct: 249 LSLLKELLGAHKDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFK 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVIL 688
            G+  +LV  ++   GLDIP+   V   +           + +  IGR AR   + + + 
Sbjct: 309 SGEVKILVATDVAARGLDIPDVKYVYNYE-----LPNVPDAYVHRIGRTARAGKDGQAVA 363

Query: 689 YADTITKSIQLAIDET 704
           +          AI +T
Sbjct: 364 FCAPDEMGELKAIQKT 379


>gi|297824215|ref|XP_002879990.1| hypothetical protein ARALYDRAFT_483345 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297325829|gb|EFH56249.1| hypothetical protein ARALYDRAFT_483345 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 627

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 71/196 (36%), Gaps = 20/196 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYD 573
              T++ SAT    E+++     +   I          T L+   VE      +   + D
Sbjct: 344 VRQTLLFSAT-FPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMD 402

Query: 574 EINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            ++   + G++      L+ V TKR A+ L  +L         +H +    ER   ++  
Sbjct: 403 LLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAF 462

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           + G+  +LV  ++   GLDIP    V   D             +  IGR  R   S    
Sbjct: 463 KSGRTPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKSGLAT 517

Query: 688 LYADTITKSIQLAIDE 703
            + +    S+   + E
Sbjct: 518 AFFNDGNTSLARPLAE 533


>gi|326533288|dbj|BAJ93616.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 463

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 87/253 (34%), Gaps = 47/253 (18%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT                +E+   + + ++ I +    V    ++         
Sbjct: 217 QILLYSATFPCTVDQFIKKHMHNPYEINLMEELTLKGITQYYAYVQEKQKVH-------- 268

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   + +  E L + + E      Y+H++++   R  I  D R 
Sbjct: 269 CLNTLFSKLQINQSI-IFCNSTQRVELLAKKITELGYSCFYIHAKMRQEHRNRIFHDFRN 327

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F +   + +  IGR+ R  +  + +  
Sbjct: 328 GACRNLVCSDLFTRGIDIQAVNVVINFD-----FPKMSETYLHRIGRSGRFGHLGIAINL 382

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ--SVKEKIMEVIDPILLEDAATTNISI 748
            T      L                  H I  +  +  + I +VIDP L      T    
Sbjct: 383 ITYDDRYAL------------------HKIEQELGTEIKPIPKVIDPHLYVAEYQTEEEF 424

Query: 749 DAQQLSLSKKKGK 761
           +  +LS  K+K K
Sbjct: 425 NQLKLSEQKEKDK 437


>gi|260776311|ref|ZP_05885206.1| ATP-dependent RNA helicase RhlE [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607534|gb|EEX33799.1| ATP-dependent RNA helicase RhlE [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 483

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 60/323 (18%), Positives = 106/323 (32%), Gaps = 54/323 (16%)

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE----- 456
           EL  ++ E     +    QRL   + +                 +  +T    G      
Sbjct: 84  ELAAQVQE--NVFKYSRYQRLTSNVVF------------GGVKINPQMTKLRKGTDVLVA 129

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   ++++ F         Q+  +   +  R     + GF      D R +   
Sbjct: 130 TPGRLLDLYQQNAINF--------SQLEVLVLDEADRM---LDMGFI----RDIRKILAL 174

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDV 571
                    ++ SAT  +   E  +G++   VE  + P       +E  I  A  + +  
Sbjct: 175 LPEKR--QNLLFSATFSAEIRELAKGLVNDPVEVSVNPENSTAVTIEQSIYPAD-KRKKA 231

Query: 572 YDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
              + L      R +L+   TK  A  L+ YL ++ I    +H       R + + D + 
Sbjct: 232 PMLVKLIKDGDWRQVLVFSRTKHGANRLSHYLNDQGITAAPIHGNKSQGARTKALADFKS 291

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILY 689
           G+  VLV  ++   G+DIP+   V   +             +  IGR  R     K I  
Sbjct: 292 GEVRVLVATDIAARGIDIPQLPQVVNFE-----LPHVAEDYVHRIGRTGRAGEVGKAISL 346

Query: 690 ADTITKSIQLAIDETTRRREKQL 712
            +    S    I+     R  Q 
Sbjct: 347 VEAAEASELFGIE-----RLIQQ 364


>gi|241148964|ref|XP_002405951.1| ATP-dependent helicase (DEAD box), putative [Ixodes scapularis]
 gi|215493784|gb|EEC03425.1| ATP-dependent helicase (DEAD box), putative [Ixodes scapularis]
          Length = 685

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 99/280 (35%), Gaps = 46/280 (16%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++        +   V + + + +   +  R     + GF         P   +
Sbjct: 270 TPGRLIDFL--------EAGKVNLRRCTYLVLDEADRM---LDMGFE--------PQIRK 310

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP-----PVEIRSA----- 564
               +RP   T++ SAT         +  + + I    G +        V+I        
Sbjct: 311 IVEQIRPDCQTLMWSATWPKEVRSLAEDFLKDYIQVNIGALQLCANHRIVQIVDVCQESD 370

Query: 565 -RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              ++ +++ EI    +Q  + L+   TK+  ++LT  +         +H +    ER  
Sbjct: 371 KENKLMELHKEIIN--EQDNKTLIFAETKKKVDELTRRMRRNGWPSICIHGDKSQSERDW 428

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++ + R G+  +LV  ++   GLD+ +   V   D     +       I  IGR AR+ N
Sbjct: 429 VLNEFRSGRSPILVATDVAARGLDVDDIRFVINYD-----YPHCSEDYIHRIGRTARS-N 482

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
                Y      +++ A +         +       INP+
Sbjct: 483 KTGTAYTFFTPGNMKQAKE------LIAVLKEANQAINPK 516


>gi|120564784|gb|ABM30181.1| VASA3n [Paragonimus westermani]
          Length = 606

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D   ++  ++  G+  L+ V TKR A+ L +YL+ +   V  +H +    +R   +   R
Sbjct: 377 DALVDLLSSSDPGVLTLVFVETKRGADSLEDYLFSQKFHVASIHGDRTQDDRELALPCFR 436

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL- 688
            G+  +LV   +   GLDIP    V   D             +  IGR  R  N  +   
Sbjct: 437 NGRTPILVATAVAARGLDIPNVKHVINYD-----LPSDIEEYVHRIGRTGRVGNLGIATS 491

Query: 689 YADTITKSIQLAIDE 703
           + +   +++   + E
Sbjct: 492 FFNDKNRNLARGLVE 506


>gi|332366034|gb|EGJ43790.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1059]
          Length = 523

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVD-QYYIRVKENEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    S ++   ++ SL  Q
Sbjct: 409 AAEF---SPEELAMYILSLTVQ 427


>gi|327468980|gb|EGF14452.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK330]
          Length = 523

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVD-QYYIRVKENEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    S ++   ++ SL  Q
Sbjct: 409 AAEF---SPEELAMYILSLTVQ 427


>gi|325690149|gb|EGD32153.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK115]
          Length = 523

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVD-QYYIRVKENEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    S ++   ++ SL  Q
Sbjct: 409 AAEF---SPEELAMYILSLTVQ 427


>gi|323453004|gb|EGB08876.1| Apo-Eif4aiii [Aureococcus anophagefferens]
          Length = 395

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 27/211 (12%)

Query: 510 NRPLRFEEWNCLR-----PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVD 556
           NR  + + ++  R        +++SAT     L+  +  + E +        +   G+  
Sbjct: 178 NRGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMTRKFMNEPVRVLVKRDELTLEGIKQ 237

Query: 557 PPVEIRSARTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
             V +     + +   D+YD + +      + ++   TKR  + L   + E N  V  MH
Sbjct: 238 FFVAVEREEWKFDTLCDLYDTLTIT-----QAVIFCNTKRKVDWLANKMREANFTVSAMH 292

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            ++   ER  I+ + R G   VL+  ++   GLD+ +  LV   D        ++   I 
Sbjct: 293 GDMPQRERDAIMAEFRGGASRVLIATDIWGRGLDVQQVSLVICYD-----LPNNRELYIH 347

Query: 674 TIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
            IGR+ R     V I +       I   I++
Sbjct: 348 RIGRSGRFGRKGVAINFVKNDDVRILRDIEQ 378


>gi|212542881|ref|XP_002151595.1| DEAD/DEAH box RNA helicase [Penicillium marneffei ATCC 18224]
 gi|210066502|gb|EEA20595.1| DEAD/DEAH box RNA helicase [Penicillium marneffei ATCC 18224]
          Length = 1207

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 90/253 (35%), Gaps = 28/253 (11%)

Query: 523 PTTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEI 575
             T++ SAT P + E    +     VE I+    +V P +    E+R+  T+   + + +
Sbjct: 757 KQTVLFSATFPRNMEALARKTLIKPVEIIVGGRSVVAPEITQIVEVRNENTKFLRLLELL 816

Query: 576 NLA----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                  A +  R L+ V  +  A+ L   L  +      +H     ++R   I D + G
Sbjct: 817 GNLYSDEANEDARTLIFVDRQEAADSLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAG 876

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
            F VL+  ++   GLD+ +  LV   DA            +   GR  R  N+   +   
Sbjct: 877 IFPVLIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF- 930

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISID 749
                    + E   R    +    K      P+ V++ +   ++ +       +     
Sbjct: 931 ---------LTEDQERYSVDIAKALKQSGQAVPEPVQKLVDSFLEKVKAGKEKASASGFG 981

Query: 750 AQQLSLSKKKGKA 762
            + L    ++  A
Sbjct: 982 GKGLERLDQERDA 994


>gi|221059537|ref|XP_002260414.1| helicase [Plasmodium knowlesi strain H]
 gi|193810487|emb|CAQ41681.1| helicase, putative [Plasmodium knowlesi strain H]
          Length = 528

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 70/188 (37%), Gaps = 16/188 (8%)

Query: 519 NCLRP--TTIVVSATPGSWELEQCQGIIVEQII---------RPTGLVDPPVEIRSARTQ 567
             +RP   T++ SAT         + +  +Q I              +   + +     +
Sbjct: 286 EQIRPDRQTLMWSATWPKEVQSLARDLCKQQPIHVNVGSLTLTACRRIKQEIYLIEEHEK 345

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           + ++   +    +   RI++ V TK+ A+ +T+ L    +    +H + K  ER  ++ D
Sbjct: 346 IANLKLLLQRIFRDNDRIIVFVETKKNADFITKALRLDGVPALCIHGDKKQDERRWVLND 405

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + GK  +L+  ++   GLDI +   V   D     F       +  IGR  R       
Sbjct: 406 FKTGKSPILIATDVASRGLDIKDVKYVVNFD-----FPNQIEDYVHRIGRTGRAGAHGAS 460

Query: 688 LYADTITK 695
               T  K
Sbjct: 461 FTFLTSDK 468


>gi|183979315|dbj|BAG30754.1| DEAD box polypeptide 5 [Papilio xuthus]
          Length = 539

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 92/255 (36%), Gaps = 37/255 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ + +          + + + +   +  R     + GF         P   +
Sbjct: 237 TPGRLIDFLEKGTT--------NLQRCTYLVLDEADRM---LDMGFE--------PQIRK 277

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEI---RS 563
               +RP   T++ SAT      +  +  + + +    G +           V++     
Sbjct: 278 IIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYLQINIGSLQLSANHNILQIVDVCQEHE 337

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              ++  +  EI  + + G + ++ V TKR  E++T  +         MH +    ER +
Sbjct: 338 KENKLNVLLQEIGQSQEPGAKTIIFVETKRKVENITRNIRRFGWPAVCMHGDKTQQERDD 397

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++   + G+  +LV  ++   GLD+     V   D     +  S    I  IGR  R+ +
Sbjct: 398 VLYQFKQGRASILVATDVAARGLDVDGIKYVINFD-----YPNSSEDYIHRIGRTGRSKS 452

Query: 684 SKVILYADTITKSIQ 698
                   T + S Q
Sbjct: 453 KGTSYAFFTPSNSRQ 467


>gi|319405915|emb|CBI79547.1| ATP-dependent RNA helicase [Bartonella sp. AR 15-3]
          Length = 430

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 86/235 (36%), Gaps = 40/235 (17%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            + + GF       N   +   +   +  T + SAT  S E+      ++++ ++     
Sbjct: 165 RMLDMGFI------NDVRQIANFLHKKCQTALFSAT-MSKEVNVLADNLLKKPVK----- 212

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEY 601
              +E+ S  T   ++   +   +    +              +++ + TK  A+ +   
Sbjct: 213 ---IEVVSQGTTAAEITQVLYCVSTSEKKSVLGKLLTNPALASVIVFIRTKHGADSVARS 269

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L +    V  +H       R   ++D R G   VLV  ++   G+DIP    V   D   
Sbjct: 270 LAKTGYSVATIHGNKSQNARQRALKDFREGLVRVLVATDIAARGIDIPRISHVINYD--- 326

Query: 662 EGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR----RREK 710
                +  S +  IGR  RN  S   + L+ + I +    AI+   R    R+E 
Sbjct: 327 --LPDNAESYVHRIGRTGRNSASGDAITLFDEKIEQVRLCAIERLIRMKITRKEI 379


>gi|156100409|ref|XP_001615932.1| helicase [Plasmodium vivax SaI-1]
 gi|148804806|gb|EDL46205.1| helicase, putative [Plasmodium vivax]
          Length = 528

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 70/188 (37%), Gaps = 16/188 (8%)

Query: 519 NCLRP--TTIVVSATPGSWELEQCQGIIVEQII---------RPTGLVDPPVEIRSARTQ 567
             +RP   T++ SAT         + +  +Q I              +   + +     +
Sbjct: 286 EQIRPDRQTLMWSATWPKEVQSLARDLCKQQPIHVNVGSLTLTACRRIKQEIYLIEEHEK 345

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           + ++   +    +   RI++ V TK+ A+ +T+ L    +    +H + K  ER  ++ D
Sbjct: 346 IANLKLLLQRIFRDNDRIIVFVETKKNADFITKALRLDGVPALCIHGDKKQDERRWVLND 405

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + GK  +L+  ++   GLDI +   V   D     F       +  IGR  R       
Sbjct: 406 FKTGKSPILIATDVASRGLDIKDVKYVINFD-----FPNQIEDYVHRIGRTGRAGAHGAS 460

Query: 688 LYADTITK 695
               T  K
Sbjct: 461 FTFLTSDK 468


>gi|327461635|gb|EGF07966.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1]
          Length = 523

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVD-QYYIRVKENEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    S ++   ++ SL  Q
Sbjct: 409 AAEF---SPEELAMYILSLTVQ 427


>gi|325697116|gb|EGD39003.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK160]
 gi|327473355|gb|EGF18775.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK408]
 gi|332362751|gb|EGJ40547.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK49]
          Length = 523

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVD-QYYIRVKENEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    S ++   ++ SL  Q
Sbjct: 409 AAEF---SPEELAMYILSLTVQ 427


>gi|261314221|ref|ZP_05953418.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261303247|gb|EEY06744.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
          Length = 462

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 159 LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 208

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 209 LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 268

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 269 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGSSH 328

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 329 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 378


>gi|258566652|ref|XP_002584070.1| ATP-dependent RNA helicase ded1 [Uncinocarpus reesii 1704]
 gi|237905516|gb|EEP79917.1| ATP-dependent RNA helicase ded1 [Uncinocarpus reesii 1704]
          Length = 670

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ L+E+L  +N     +H +    ER   +   R  +  +LV   +   
Sbjct: 444 TLIFVETKRMADSLSEFLINQNFPATAIHGDRTQRERERALEYFRNARCPILVATAVAAR 503

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           GLDIP    V   D             +  IGR  R  N+ 
Sbjct: 504 GLDIPNVTHVVNYD-----LPTDIDDYVHRIGRTGRAGNTG 539


>gi|226356665|ref|YP_002786405.1| DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti VCD115]
 gi|226318655|gb|ACO46651.1| putative DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti
           VCD115]
          Length = 602

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 95/260 (36%), Gaps = 33/260 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ-VEDVYDEINLAAQQ- 581
            T++ SAT  +      +  + E +I     VD   E +S   Q VE +   +  +  + 
Sbjct: 176 QTMLFSATLNNDINRLSRNYLREPVI-----VDMVGEGKSQAAQTVEHLKVRVGRSRTRV 230

Query: 582 ---------GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      + ++   TKR A++L   L  R +    +H ++   +R   +   R G+
Sbjct: 231 LADLLTIYNPEKAIVFTRTKREADELANELIHRGLEAEALHGDLAQSQRERALGAFRSGR 290

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYA 690
             VLV  ++   GLDIPE  LV      +    +   S +   GR  R   +   +I+Y 
Sbjct: 291 VGVLVATDVAARGLDIPEVDLVV-----QYHLPQDPESYVHRSGRTGRAGRTGTAIIMYG 345

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK----EKIMEVIDPILLEDAATTNI 746
           D   + +      T  R    +E        P+ V+    +   +++  +    AAT   
Sbjct: 346 DRENREVMGLERITGVR---FIERPL---PTPKEVQAASAKTSADMVRKVDSGVAATFQA 399

Query: 747 SIDAQQLSLSKKKGKAHLKS 766
             +     L  +     L  
Sbjct: 400 EAERLFSELGLEALTRALAK 419


>gi|225390528|ref|ZP_03760252.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
           DSM 15981]
 gi|225043410|gb|EEG53656.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
           DSM 15981]
          Length = 595

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 103/272 (37%), Gaps = 37/272 (13%)

Query: 524 TTIVVSAT--PGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT  P   E+      E     +V++ +    +     E++  + +VE +   +
Sbjct: 207 QTLMFSATMPPAIAEIARKFQKEPVTVRVVKKELTVPKVTQYYYEVKP-KNKVEVMCRLL 265

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +L A +    ++   TK+  ++L + L  R      +H ++K ++R  ++   R G+ D+
Sbjct: 266 DLYAPK--LSIVFCNTKKQVDELVQALQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDI 323

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+D+ +   V   D       +     +  IGR  R               
Sbjct: 324 LVATDVAARGIDVGDVEAVFNYD-----IPQDDEYYVHRIGRTGRAGREGKAFSLV---- 374

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
                  E  + R+ Q     K  I PQ++   + ++ +             +D  +  +
Sbjct: 375 ----VGREVYKLRDIQ--RYCKTRIIPQAIP-SLNDITE-------IKVEKILDQVEEVM 420

Query: 756 SKKKGKAHLKSLRKQ-MHLAADNLNFEEAARI 786
           +       +  + K+ M     +L+   AA +
Sbjct: 421 NDSDLSKMVGIIEKKLMEEEYTSLD--LAAAL 450


>gi|118579192|ref|YP_900442.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118501902|gb|ABK98384.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 447

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 78/243 (32%), Gaps = 29/243 (11%)

Query: 490 DFHRKATLA--------EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           D  R   L         + GF LP     R L+          T++ SAT          
Sbjct: 141 DLSRIEVLVLDEADQMFDMGF-LPDI--RRVLKHLPAQR---QTLLFSATMPDDIRRLAS 194

Query: 542 GIIVEQIIRPTGLVDPPVEI----RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
            I+ + I    G   PPV +          ++       L       +L+   TK  A+ 
Sbjct: 195 DILRQPITVQAGSTAPPVTVSHALYPVSQHLKTPLLLELLRHTDTESVLIFARTKHRAKR 254

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L E L +   R   +   +    R   +   R G F ++V  ++   G+D+ +   V   
Sbjct: 255 LGEQLEKAGYRATSLQGNLSQNRRQAALDGFRDGTFQIMVATDIAARGIDVSQISHVVNY 314

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAID-----ETTRRREKQ 711
           D        +  + I  IGR  R   S            ++   I+     E  RR   Q
Sbjct: 315 D-----IPDTAEAYIHRIGRTGRAARSGDAFTLVTPDDNAMVRTIEKKLNAELERRTVDQ 369

Query: 712 LEH 714
            ++
Sbjct: 370 FDY 372


>gi|302802223|ref|XP_002982867.1| hypothetical protein SELMODRAFT_52119 [Selaginella moellendorffii]
 gi|300149457|gb|EFJ16112.1| hypothetical protein SELMODRAFT_52119 [Selaginella moellendorffii]
          Length = 431

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 63/176 (35%), Gaps = 20/176 (11%)

Query: 524 TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT         G +  +    + + ++   T  ++  + I   R Q  D    +
Sbjct: 222 QTLMFSATFPKKIQRLAGEFLRKDYVFLAIGEVGSSTSRIEQEI-IFVQRNQKHDCLGMV 280

Query: 576 NLAAQQG------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
               Q         + L+ V TK  A+DL  +L  R      +H +    ER   ++  +
Sbjct: 281 IDRQQMHGSKSNVRKTLVFVGTKLKADDLEIWLRSRGYVAIAIHGDKTQEERRRALKSFK 340

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            G   +LV   +   G+DIP+   V   D        +    +  IGR  R     
Sbjct: 341 SGSTPLLVATEVASRGIDIPDVSHVINFD-----LPTNIDDYVHRIGRTGRAGKRG 391


>gi|269104240|ref|ZP_06156936.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268160880|gb|EEZ39377.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 431

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 116/307 (37%), Gaps = 64/307 (20%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L +         VD + + + ++  +   +  R  +L   GF   L + ++  P  
Sbjct: 145 TPGRLLD--------LVDHNAIKLDRVKTLVLDEADRMLSL---GFTEELTNVLNQLP-- 191

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT-GLVDPPVEIRSARTQVED--V 571
                  +  T++ SAT              EQ+   T  L++ PVEI   + Q +D   
Sbjct: 192 ------KQKQTLLFSAT------------FPEQVQSLTQDLLNNPVEI---QIQSDDAST 230

Query: 572 YDEINLAAQQGLRI---------------LLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
            ++      +G +                L+ V  K   + L E L++R I     H + 
Sbjct: 231 IEQHVYTVNKGEKTAVLAHLIKQNQWRQALVFVAAKNSCKHLAEKLHKRGIEAEVFHGDK 290

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
               R  II D + GK +VL+  ++   GLDI +  +V  +D       RS +  +  IG
Sbjct: 291 AQSSRTRIIEDFKSGKIEVLIATDIAARGLDIEKLPVVINVD-----LPRSPSDYMHRIG 345

Query: 677 RAARNVNSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN-PQSVKEKIMEVID 734
           R+ R   +   I   D         I++     + +LE  +       ++  +K+++V  
Sbjct: 346 RSGRAGEAGLAISLIDYEDFHHFKVIEKKN---KIRLEREQVAGFEFDEAKAKKMLDVKK 402

Query: 735 PILLEDA 741
           P+   + 
Sbjct: 403 PMAKPEG 409


>gi|153806359|ref|ZP_01959027.1| hypothetical protein BACCAC_00620 [Bacteroides caccae ATCC 43185]
 gi|149131036|gb|EDM22242.1| hypothetical protein BACCAC_00620 [Bacteroides caccae ATCC 43185]
          Length = 420

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 79/193 (40%), Gaps = 28/193 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       ++II+   +     ++   R    D
Sbjct: 182 QTIMFSATMPAKIQQLANTILNNPSEIKLAVSRPADKIIQAAYVCYENQKLGIIRNLFMD 241

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                    +   R+++   +K   +++T+ L    + V  MHS+++ ++R  ++ D + 
Sbjct: 242 ---------EVPERVIIFASSKIKVKEVTKALKSMKLNVGEMHSDLEQVQREAVMHDFKA 292

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+ ++LV  +++  G+DI +  LV   D             +  IGR AR  N  V + +
Sbjct: 293 GRINILVATDIVARGIDIDDIRLVINFDV-----PHDSEDYVHRIGRTARANNDGVALTF 347

Query: 690 ADTITKSIQLAID 702
                +S   +I+
Sbjct: 348 VSEKEQSNFKSIE 360


>gi|119946657|ref|YP_944337.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119865261|gb|ABM04738.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 453

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 71/197 (36%), Gaps = 27/197 (13%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +Q  ++++ V T+    +L   L E  I   Y+  E+   +R   +   R G  ++L+  
Sbjct: 248 EQQQKVIVFVKTRDRLTELVAQLAELQIPCTYLRGEMDQEKRNLALNQFRAGNINILIAT 307

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   G+D+P+   V   D  +     S    +  IGR AR     + +          L
Sbjct: 308 DVAARGIDVPDITHVINYDMPR-----SADIYVHRIGRTARGGKKGIAISLIEAHDVDML 362

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE-------DAATTNISIDAQQ 752
           A  E   R   Q+            +K ++++ + P   E            N     ++
Sbjct: 363 AKVE---RYTDQI------------IKRRVVKTLRPTHKEAQPSQRKTKNNVNKKSKNRE 407

Query: 753 LSLSKKKGKAHLKSLRK 769
             L K++    LK    
Sbjct: 408 EELKKEQKAKRLKKKED 424


>gi|310779687|ref|YP_003968020.1| transcription-repair coupling factor [Ilyobacter polytropus DSM
           2926]
 gi|309749010|gb|ADO83672.1| transcription-repair coupling factor [Ilyobacter polytropus DSM
           2926]
          Length = 991

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 5/172 (2%)

Query: 263 TRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDI 322
              +LE  D  ++  +  + GI      S   ++L +    + K +   LVK  +++  +
Sbjct: 73  LLKILENRDNWIL--LVSLEGILRDYFASGDQIELCLEKDYDLKAIEEKLVKNGFRKNYL 130

Query: 323 GIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYAN 382
              R  +   GD ++I+P + E+   R+  FG+++E IS F   T + + N++ I +Y N
Sbjct: 131 VEKRWEYSRRGDILDIYPPNGEN-PVRIEFFGDEVERISYFNIETQKSMGNLDKINVYIN 189

Query: 383 SHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
           ++    +         + +EL++ L   E     LE   L  R   D   L 
Sbjct: 190 NNKAGKKTFSELLENMVSDELEIYLENKELMNYKLEE--LILRKREDESDLR 239



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 10/180 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    II+       PVE        E++ + +     +  
Sbjct: 616 MLTLTATPIPRTLNLAFLGIRDISIIQTPPPNRLPVETNFIEKTRENIKEAVMKEVAREG 675

Query: 584 RILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +I     +    KR  E++ E +  + ++  Y+H ++   E  + I+D   G+ D+L+  
Sbjct: 676 QIFYLFNSVKNMKRKLEEI-ESIIPKYVKTTYIHGQMTPKEIRDRIKDFEDGEVDLLLST 734

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I + DK G  +      Q  GR  R              K +  
Sbjct: 735 TIIENGIDIENANTIIIENIDKLGLSQVY----QLRGRVGRGSRKAYCYLVVDKDKKMTK 790


>gi|255085454|ref|XP_002505158.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
 gi|226520427|gb|ACO66416.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
          Length = 675

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 96/262 (36%), Gaps = 29/262 (11%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
                 + + GF      D+    +  +   R  T++ SAT      +  +  +V  I+ 
Sbjct: 391 MDEADRMVDLGFE-----DDIRDIYSFFKSQR-QTLLFSATMPEKIRKFAESALVNPIVV 444

Query: 551 PTGL-----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
             G      +D   E+   + Q   +   +    +    +L+    K   +D+ EYL  +
Sbjct: 445 NVGRAGAANLDVIQEVEYVK-QEAKIVYLLECLQKTAPPVLIFCENKGDVDDIHEYLLLK 503

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +    +H      ER   I + +  + DVLV  ++  +GLD P+   V   D  +E   
Sbjct: 504 GVEAVAIHGGKGQDERDWAISEFKAQRKDVLVATDVAGKGLDFPDIQHVINYDMPEE--- 560

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
               + +  IGR  R   + +        +S  + +D       K L    K  I P   
Sbjct: 561 --IENYVHRIGRTGRCGKTGIATTFINKNQSETILLD------LKHLLREAKQRIPP--- 609

Query: 726 KEKIMEVIDPILLEDAATTNIS 747
              ++ ++D  + ++A    ++
Sbjct: 610 ---VLAMLDDPMDQEAELVALT 628


>gi|159466510|ref|XP_001691452.1| eukaryotic initiation factor 4A-like protein [Chlamydomonas
           reinhardtii]
 gi|158279424|gb|EDP05185.1| eukaryotic initiation factor 4A-like protein [Chlamydomonas
           reinhardtii]
          Length = 413

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPPKLQVGVFSATLPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++   T+R  + LT+ + ER+  V   H ++    R  I
Sbjct: 264 EWKLDTLCDLYETLAIT--QSVIFANTRRKVDWLTDKMRERDHTVSATHGDMDQNTRDVI 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 377 GVAINFVTKDDERMLQDIQR 396


>gi|148229654|ref|NP_001084230.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus laevis]
 gi|8163810|gb|AAF73861.1|AF218580_1 p68 RNA helicase [Xenopus laevis]
          Length = 608

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 18/161 (11%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA--QQGLRILLTVLTKRM 594
           LE      + QI+                 + +D    +      ++  + ++ V TKR 
Sbjct: 303 LELSANHNILQIVDVCN-----------DGEKDDKLVRLMEEIMSEKENKTIVFVETKRR 351

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            +DLT  L         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V
Sbjct: 352 CDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIATDVASRGLDVEDVKFV 411

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
              D     +  S    I  IGR AR+  +       T   
Sbjct: 412 INYD-----YPNSSEDYIHRIGRTARSSKTGTAYTFFTPGN 447


>gi|134299771|ref|YP_001113267.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134052471|gb|ABO50442.1| ATP-dependent RNA helicase DbpA [Desulfotomaculum reducens MI-1]
          Length = 532

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 98/266 (36%), Gaps = 34/266 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIR----SARTQVEDVYDEIN 576
            T++ SAT     +   Q  + +     +  T L  P +E        + ++E +   ++
Sbjct: 183 QTLLFSATMPQEIIRLAQQYMTDPKYVTVSKTNLTVPQIEQVFYEAPEKNKLEALCRILD 242

Query: 577 LA-AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++   QG   +L   TKR  ++L   L  R      +H ++   +R  ++R  R  + ++
Sbjct: 243 ISDISQG---ILFCRTKRGVDELVAGLQARGFAAAALHGDLSQQQRNTVMRQFRSSEVEL 299

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI     V   D       +     +  IGR  R   S V +   +   
Sbjct: 300 LVATDVAARGLDIEGVSHVINYD-----IPQDPEFYVHRIGRTGRAGRSGVAITIISPR- 353

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
                      R+ +Q+E     NI    +K + +  I  ++     +    +       
Sbjct: 354 ---------EYRQLRQIE-----NITKTHIKRQKLPSIADVVERQKESIKERLIQIINEG 399

Query: 756 SKKKGKAHLKSLRKQ---MHLAADNL 778
                ++ + +L  +   M +AA  L
Sbjct: 400 KLGYYRSVVDALVDEYDPMDIAAAAL 425


>gi|284048361|ref|YP_003398700.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952582|gb|ADB47385.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
          Length = 544

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 94/271 (34%), Gaps = 34/271 (12%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEI----RSARTQVEDVYDEINLA 578
            T++ SAT P        + +   +++     V     I       R +V+ +   ++  
Sbjct: 194 QTMLFSATMPRPILSISKKYMRAPKVVAIHKEVVTAPTIDQYYYETRDKVDGLCRILDTT 253

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                ++++   TK+  ++L   L  R      +H ++   +R  +++  R G+ D+LV 
Sbjct: 254 DDC--KMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVA 311

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI     V   D   +       S +  IGR  R  N+ V L   T  +  Q
Sbjct: 312 TDVAARGLDIDNITHVVNFDVPSD-----SESYVHRIGRTGRAGNTGVALTFITPREFRQ 366

Query: 699 LAIDETTRRREKQLEHNKKHNINP----------QSVKEKIMEVIDPILLEDAATTNISI 748
           L + E    R  + +        P          + +  K+  +++    +D      ++
Sbjct: 367 LKLIE----RSIKTK--IIRGTLPTDASVLERQREQIVSKMQTILEQDRYQDYLPIVETL 420

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLN 779
           +                   K M   A  L 
Sbjct: 421 EKDYDVQDIAAAAL------KFMQEGAKALE 445


>gi|215788934|gb|ACJ69403.1| Vasa [Botryllus schlosseri]
          Length = 547

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 90/260 (34%), Gaps = 38/260 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF-----RLPSCMDNR 511
            P  L ++        +D   V+   +  +   +  R     + GF     RL       
Sbjct: 227 TPGRLLDF--------IDRGKVSCECVEYIILDEADRM---LDMGFEPEIRRLLGAPGMP 275

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT--GLVDPPVEIRSARTQVE 569
                  +     T++ SAT      +     + +  +  T   +     ++  A  Q++
Sbjct: 276 -------DKNTRHTLMFSATSPDDIQKLAHEFLRDDFLFLTVGRVGGACSDVTQAMIQID 328

Query: 570 D------VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                  + + ++       R L+ V TKR A+ L     + N+    +H + +  ER  
Sbjct: 329 HSEKRDKLMELLSDVPTTKARTLVFVDTKRNADFLATLPSQENLPTTSIHGDRQQREREM 388

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            + D + G   +L+  ++   GLDIP+   V   D   E         +  IGR  R  N
Sbjct: 389 ALVDFKNGTCPILIATSVAARGLDIPKVEHVINYDLPSE-----IDEYVHRIGRTGRCGN 443

Query: 684 SKVI--LYADTITKSIQLAI 701
                  Y D+   ++  ++
Sbjct: 444 LGTATSFYDDSKDGTLARSL 463


>gi|26348749|dbj|BAC38014.1| unnamed protein product [Mus musculus]
          Length = 579

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G +  +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 404 MRELVKKGFKPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 463

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K + +  
Sbjct: 464 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNRGKAVTFFT 518

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 519 EDDKPLLRSV 528


>gi|223932903|ref|ZP_03624899.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|330833198|ref|YP_004402023.1| DEAD/DEAH box helicase domain-containing protein [Streptococcus
           suis ST3]
 gi|223898484|gb|EEF64849.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|329307421|gb|AEB81837.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST3]
          Length = 526

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 16/200 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ +IRD +  + DVLV 
Sbjct: 236 VDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +   
Sbjct: 296 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGY 350

Query: 699 LAIDE--TTRRRE------KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
           LAI E  T +R +       Q     K  +  + ++ ++ +       +      I + A
Sbjct: 351 LAIIEDLTKKRMKGLKPATAQEAFEAKKKVALKKIEREMADETIRSNFDKFKKDAIQLAA 410

Query: 751 QQLSLSKKKGKAHLKSLRKQ 770
           +    + ++   ++ +L  Q
Sbjct: 411 EF---TPEELALYVLTLTVQ 427


>gi|327265659|ref|XP_003217625.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Anolis
           carolinensis]
          Length = 672

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 87/238 (36%), Gaps = 23/238 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D     +  +             + + GF      D R + F  +   R  T++ SAT
Sbjct: 374 LMDLLQKKMVSLDVCRYLALDEADRMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSAT 427

Query: 532 PGSWELEQCQGIIVEQIIRPTG-----LVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                    +  +V+ I    G      +D   E+   + + + VY  +    +    +L
Sbjct: 428 MPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVL 486

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +GL
Sbjct: 487 IFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKDVLVATDVASKGL 546

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           D P    V   D  +E       + +  IGR  R+ N+ +          I  A DE+
Sbjct: 547 DFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGIATTF------INKACDES 593


>gi|290580897|ref|YP_003485289.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
 gi|254997796|dbj|BAH88397.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
          Length = 517

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 95/265 (35%), Gaps = 31/265 (11%)

Query: 524 TTIVVSAT-PGS---------WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
            T++ SAT P +          E E  + +  E     T LVD    IR    +  D   
Sbjct: 176 QTLLFSATMPDAIKRIGVKFMKEPEHVKIVAKE---LTTDLVD-QYYIRVKENEKFDTMT 231

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +    +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD +    
Sbjct: 232 RLMD-VEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
           D+LV  ++   GLDI     V   D       +   S +  IGR  R       I +   
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKHGQSITFVAP 345

Query: 693 ITKSIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN 745
                   I++ T++R K       Q        +  + ++    +  D  +  +     
Sbjct: 346 NEMGYLQIIEKLTKKRMKGMKPATAQEAFQASKKVALKKIER---DFADEKIRSNFDKFT 402

Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQ 770
              +      S ++   ++ +L  Q
Sbjct: 403 KDAEKLAAEFSPEELAQYILTLTVQ 427


>gi|258570243|ref|XP_002543925.1| hypothetical protein UREG_03442 [Uncinocarpus reesii 1704]
 gi|237904195|gb|EEP78596.1| hypothetical protein UREG_03442 [Uncinocarpus reesii 1704]
          Length = 1206

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 89/252 (35%), Gaps = 28/252 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            +++ SAT P + E    +     VE I+    +V P +    E+R   T+   + + + 
Sbjct: 753 QSVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAPEITQIVEVRPENTKFVRLLELLG 812

Query: 577 LA----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                 A +  R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 813 NLYSDDANEDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTIDDFKAGI 872

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VL+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 873 FPVLIATSVAARGLDVKQLKLVINYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 925

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K      P +V++ +   ++ +       +      
Sbjct: 926 --------LTEEQERYSVDIAKALKQSGQPVPDAVQKMVDAFLEKVKSGKEKASASGFGG 977

Query: 751 QQLSLSKKKGKA 762
           + L    ++  A
Sbjct: 978 KGLERLDQERDA 989


>gi|163735815|ref|ZP_02143244.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           litoralis Och 149]
 gi|161390901|gb|EDQ15241.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           litoralis Och 149]
          Length = 433

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 73/216 (33%), Gaps = 19/216 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----P 551
            + + GF      D R  +          T++ SAT    ++ +     +   IR    P
Sbjct: 160 QMLDMGFI----HDLR--KIASVIPKERQTMLFSAT-MPKQMNELANSYLRSPIRVEVSP 212

Query: 552 TGLVDPPV--EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
            G     V  E+       +       L   +  R L+   TK  +E L + L +     
Sbjct: 213 PGKAADKVTQEVHFIAKSEKSALLIEMLDKHREERALVFGRTKHGSEKLMKSLVKAGYAA 272

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H      +R   I   + G+  VLV  ++   GLDIP+   V   D           
Sbjct: 273 GSIHGNKSQGQRDRAIAAFKSGEIKVLVATDVAARGLDIPDVKHVYNYD-----LPNVPE 327

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDET 704
           + +  IGR AR       +      +  +  AI +T
Sbjct: 328 NYVHRIGRTARAGKDGAAIAFCAPDEMGELKAIQKT 363


>gi|282860072|ref|ZP_06269153.1| ATP-dependent RNA helicase DeaD family protein [Prevotella bivia
           JCVIHMP010]
 gi|282587160|gb|EFB92384.1| ATP-dependent RNA helicase DeaD family protein [Prevotella bivia
           JCVIHMP010]
          Length = 589

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 524 TTIVVSAT-PGSWE-----LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
            TI+ SAT P   E     L +   ++   + +P   +     +     ++E + D    
Sbjct: 183 QTIMFSATMPSKIEDLAKTLLKEPEMVKLAVSKPAEKIQQSAYVCYETQKIEIIKDI--F 240

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            A    R+++   +K+  + +   L  ++I    MHS++   +R +++   + G+ DVLV
Sbjct: 241 KAGDLHRVIIFSGSKQKVKQIASSLNRKHINCGEMHSDLDQAQRDDVMFKFKSGQIDVLV 300

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV---------IL 688
             +++  G+DI +  +V   D   +         +  IGR AR     V         I 
Sbjct: 301 ATDIVARGIDIDDITMVINYDVPHDV-----EDYVHRIGRTARADRDGVAITFVNGDDIY 355

Query: 689 YADTITKSIQLAID 702
           Y   I   ++  I+
Sbjct: 356 YFQQIESFLEKTIE 369


>gi|224052974|ref|XP_002297644.1| predicted protein [Populus trichocarpa]
 gi|222844902|gb|EEE82449.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 70/194 (36%), Gaps = 20/194 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT    E+++     +   +          T L+   VE      +   + D +
Sbjct: 313 QTMLFSAT-FPKEIQRLASDFLASYVFLAVGRVGSSTDLIAQRVEFVQESDKRSHLMDLL 371

Query: 576 NLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                 G++      L+ V TK+ A+ L  +L   N     +H +    ER + +R  + 
Sbjct: 372 YAQRANGVQGKQDLTLVFVETKKGADSLEHWLCINNFPATSIHGDRSQQEREQALRSFKS 431

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G   +LV  ++   GLDIP    V   D             +  IGR  R   S     +
Sbjct: 432 GNTPILVATDVAARGLDIPRVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKSGLATAF 486

Query: 690 ADTITKSIQLAIDE 703
            +    S+   + E
Sbjct: 487 FNEGNASMARPLSE 500


>gi|157413572|ref|YP_001484438.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9215]
 gi|157388147|gb|ABV50852.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9215]
          Length = 593

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 95/245 (38%), Gaps = 16/245 (6%)

Query: 523 PTTIVVSATPGSWEL----EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
              ++ SAT    E+    ++      E +I+        +  +    Q     D +   
Sbjct: 227 KQMVLFSAT-MPSEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRI 285

Query: 579 AQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +     +++ V TK +   + E L      V  ++ ++   +R   +  L+ G  ++LV
Sbjct: 286 LELNNEGVIIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILV 345

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLD+    LV   D     F   K +    IGR  R   S   IL+ +   K 
Sbjct: 346 ATDVAARGLDVERIKLVVNYD-----FPFDKETYTHRIGRTGRAGRSGEAILFVNQREKH 400

Query: 697 IQLAIDETTRRR--EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
               ++ +TR +  E  +  NK   IN + +++ I  V +  L +D    N ++    L 
Sbjct: 401 FLRNLENSTRTKIEEINIPSNKI--INEKRMEKLIDNVNESSLAKDENEENKALIIDVLD 458

Query: 755 LSKKK 759
             K+K
Sbjct: 459 NLKEK 463


>gi|300855475|ref|YP_003780459.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300435590|gb|ADK15357.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 369

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 71/205 (34%), Gaps = 25/205 (12%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVE--------QIIRPTGLVDPPVEIRSARTQVEDV 571
             +  T+  SAT  S   +     + +        + +    +    +E    + Q + +
Sbjct: 172 SKKRQTLCFSATMNSDVKKLAYRYMTDPLVVSIKKEKVTLNNIKQYVIETTDRKKQ-DAL 230

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            + I+         ++   TKR  +DL   LY+R    + +HS++   +R  I++  R  
Sbjct: 231 CNIIDQ--DNPFMAIIFCRTKRRVDDLEIALYQRGYNCKKLHSDIPQSKRERIMKSFRNA 288

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
               L+  ++   GLDI     +   D        +  S I  IGR  R           
Sbjct: 289 DIQYLIATDVAARGLDISGVTHIYNYD-----IPENVESYIHRIGRTGRAGEEGCTCLFV 343

Query: 692 TITKSIQLAIDETTR-------RRE 709
                 +  ++E  R       RRE
Sbjct: 344 DPKD--KRTLEEIERGIKFRIPRRE 366


>gi|290957574|ref|YP_003488756.1| helicase [Streptomyces scabiei 87.22]
 gi|260647100|emb|CBG70199.1| putative helicase [Streptomyces scabiei 87.22]
          Length = 865

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 72/176 (40%), Gaps = 15/176 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--------DVY 572
           R  T++ SAT PG+      + +     IR T   D    +R+    +         ++ 
Sbjct: 216 RRQTMLFSATMPGAVIGLARRYMSQPTHIRATSPDDEGATVRNTSQHIYRAHNMDKPELV 275

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +GL +++   TKR A DL + L +R      +H ++    R + +R  R GK
Sbjct: 276 ARILQADGRGL-VMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGK 334

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            DVLV  ++   G+D+     V    +        + + +  IGR  R     + +
Sbjct: 335 VDVLVCTDVAARGIDVEGVTHVINYQS-----PEDEKTYLHRIGRTGRAGAKGIAI 385


>gi|260102329|ref|ZP_05752566.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           helveticus DSM 20075]
 gi|260083862|gb|EEW67982.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           helveticus DSM 20075]
 gi|328463453|gb|EGF35104.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus MTCC
           5463]
          Length = 503

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 76/193 (39%), Gaps = 13/193 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEIN 576
             T++ SAT   P     E+         I+   L    ++   +R+  ++  D+   + 
Sbjct: 180 KQTLLFSATMPKPILRIGEKFMKDPAIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLI 239

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                 L  L+   TKR  ++LT  L  R      +H ++    R+ +++  R GK D+L
Sbjct: 240 DVQGPDL-ALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDIL 298

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   + V + +      
Sbjct: 299 VATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEI 353

Query: 696 SIQLAIDETTRRR 708
                I++ T+++
Sbjct: 354 GYMRTIEQLTKKK 366


>gi|157150549|ref|YP_001450886.1| DEAD-box ATP dependent DNA helicase [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075343|gb|ABV10026.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 523

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVD-QYYIRVKENEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    S ++   ++ SL  Q
Sbjct: 409 AAEF---SPEELAMYILSLTVQ 427


>gi|114561648|ref|YP_749161.1| ATP-dependent RNA helicase RhlB [Shewanella frigidimarina NCIMB
           400]
 gi|122300890|sp|Q088J2|RHLB_SHEFN RecName: Full=ATP-dependent RNA helicase rhlB
 gi|114332941|gb|ABI70323.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 434

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 81/238 (34%), Gaps = 26/238 (10%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y        V +  +++  I  +   +  R   L   GF      D R L     + 
Sbjct: 145 IIDY--------VRQGVISLSHIQAVVLDEADRMFDL---GFI----KDIRFLFRRMPDA 189

Query: 521 LRPTTIVVSATPG--SWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINL 577
                ++ SAT      EL        E++ I P       ++       +ED    +  
Sbjct: 190 KSRLNMLFSATLSMKVQELAYDHMNDPEKVEIEPLEKTSKNIKEEIFYPSMEDKMRLLLS 249

Query: 578 AAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             ++    + ++   TK   E L  YL     RV  +  +V   +RI I+     G+ DV
Sbjct: 250 LIEEDWPDKAIVFSNTKHSCEKLWSYLEGDGHRVGLLTGDVPQKKRIRILEQFTSGEIDV 309

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
           LV  ++   GL I +   V   D             +  IGR  R     + I +A  
Sbjct: 310 LVATDVAARGLHISDVSHVYNYD-----LPDDCEDYVHRIGRTGRAGQKGISISFACE 362


>gi|330790576|ref|XP_003283372.1| hypothetical protein DICPUDRAFT_6001 [Dictyostelium purpureum]
 gi|325086637|gb|EGC40023.1| hypothetical protein DICPUDRAFT_6001 [Dictyostelium purpureum]
          Length = 462

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 16/143 (11%)

Query: 572 YDEINLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
              +    Q+GL   IL+   +K  A DL + L    I V  +HSE    +R  I++  R
Sbjct: 280 LMAVRQLIQKGLEPPILIFTQSKERAHDLFQELVFDGINVDVIHSERTQFQRDTIVKKFR 339

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL- 688
            GK  VL+   L+  G+D      V   D     F ++  S +  IGR  R     V   
Sbjct: 340 TGKIWVLICTELMARGMDFKGVNYVINFD-----FPQTLASYVHRIGRTGRANRPGVAYT 394

Query: 689 -YAD-------TITKSIQLAIDE 703
            Y D       TI  +++ +  E
Sbjct: 395 LYTDADKPMLPTIVHAMKKSGSE 417


>gi|404614|gb|AAD10554.1| UvrB protein [Mycoplasma genitalium]
          Length = 83

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 55/81 (67%), Gaps = 3/81 (3%)

Query: 131 INNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIE 190
           + N +K  + FQ+ T+Y P+GDQP AI +L +    + K Q+LLG T +GKTFT+A VI+
Sbjct: 6   MKNQTKSNSLFQLSTNYIPTGDQPEAIKKLSEF---KTKQQVLLGATATGKTFTIANVIQ 62

Query: 191 AMQRPAIVMAPNKILAAQLYS 211
             Q P +V+A NK LA QL++
Sbjct: 63  NSQLPTVVIAHNKTLAGQLFN 83


>gi|330443885|ref|YP_004376871.1| transcription-repair coupling factor [Chlamydophila pecorum E58]
 gi|328806995|gb|AEB41168.1| transcription-repair coupling factor [Chlamydophila pecorum E58]
          Length = 1070

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 72/212 (33%), Gaps = 15/212 (7%)

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
             L+  V      F  AK+     +P I++         L+     F P   VE+  S  
Sbjct: 7   PLLIENVRPGALAFLAAKMFHDTAQPIIMIT-TPARLDDLFENLSTFLPTLPVEFPSSEI 65

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
           D                K  +I+    R     T          V +  + +    S + 
Sbjct: 66  DLSP-------------KLVNIDAVGKRDYLLYTIHKNTAPLVCVTTLKALLEKTLSPKE 112

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
            ++  ++L +GD+++ +  +       Y +  +   +G F   G  ++IFP    +  +R
Sbjct: 113 SAKRHLELHVGDTLDPETTVELCKDLGYTQVTVAREKGEFAHRGGIVDIFPLSATE-PFR 171

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           +  +G  I  +  + P     I  V  I I  
Sbjct: 172 IEFWGEKILSLRAYNPSDQLSIEKVSQILISP 203



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 11/178 (6%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + VSATP    L     G     II    L   PV         E +   +     +G 
Sbjct: 694 CLTVSATPIPRTLYMSLTGARDLSIITMPPLDRLPVSTFLMEHNDETLSAALRHELLRGG 753

Query: 584 RILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +  +         R+AE++   + E  I V   H ++ + E  +I    +  + ++L+  
Sbjct: 754 QAYVIHNRIESLFRLAENIRTLIPEARIGVA--HGQMTSEELAKIFHKFKTQQTNILIAT 811

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
            ++  G+DIP    + I  ADK G       L Q  GR  R        +       +
Sbjct: 812 AIIENGIDIPNANTILIDHADKFG----MADLYQMKGRVGRWNKKAYCYFLVPHLDRL 865



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 15/132 (11%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K++RE++E+++    + L +L    +         TP        H +++  F     Y 
Sbjct: 493 KRSRELTEKSLVAYAEKLLQLEAQRST--------TPAFVHPP--HGEEVIKFAETFPYE 542

Query: 149 PSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ  AI Q+ +  +  +   +L+ G  G GKT   M   ++A+    R  IVM P  
Sbjct: 543 ETPDQLKAIEQIYEDMMSEKLMDRLICGDAGFGKTEVIMRAAVKAVCDGHRQVIVMVPTT 602

Query: 204 ILAAQLYSEFKN 215
           ILA Q Y  FK 
Sbjct: 603 ILAHQHYETFKQ 614


>gi|319407348|emb|CBI80993.1| ATP-dependent RNA helicase [Bartonella sp. 1-1C]
          Length = 501

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 88/261 (33%), Gaps = 35/261 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVE--IRSARTQVED---VYDE 574
            T+  SAT      +  +  +      +I   +       +  ++S     +    + + 
Sbjct: 216 QTLFFSATMAPEITQLTKQFLHSPVYIEITEASSTAKTITQRLVKSESKPCDKKAVLKEL 275

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I     +    ++    K+   +L +YL + N  V  +H ++    R   +   +  KF 
Sbjct: 276 IQNEGDELKNAIIFCNRKKDISELFQYLIKHNFSVGTLHGDMDQHSRTNTLASFKNNKFI 335

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTI 693
           +L+  ++   GLDIP    V   D             I  IGR  R   S K        
Sbjct: 336 LLIASDVAARGLDIPAVSHVFNYDV-----PTHAEDYIHRIGRTGRAKRSGKAFTIVTKA 390

Query: 694 TKSIQLAIDETTRRREKQ---------LEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
            +    AI+E ++  + +         + H++++N   ++                  T 
Sbjct: 391 DEKYICAIEEISKE-KIEWLNGDLSTLIAHDEENNTVSKT----------KPTKSQQKTA 439

Query: 745 NISIDAQQLSLSKKKGKAHLK 765
                 Q   + +K+  A+++
Sbjct: 440 QKERKTQTKKIPEKEKSAYIE 460


>gi|169145046|emb|CAQ08925.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
          Length = 652

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 14/147 (9%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 639 INLLREGLD--IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            ++   GL   + +   V   D     +  S    +  IGR AR+ N        T   +
Sbjct: 396 TDVASRGLGLYVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPG-N 449

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQ 723
           ++ A      R   ++       INP+
Sbjct: 450 LKQA------RELIKVLEEANQAINPK 470


>gi|82778002|ref|YP_404351.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae Sd197]
 gi|309784609|ref|ZP_07679244.1| ATP-dependent RNA helicase srmB [Shigella dysenteriae 1617]
 gi|81242150|gb|ABB62860.1| ATP-dependent RNA helicase [Shigella dysenteriae Sd197]
 gi|308927506|gb|EFP72978.1| ATP-dependent RNA helicase srmB [Shigella dysenteriae 1617]
          Length = 444

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 91/253 (35%), Gaps = 17/253 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT  G    +  + ++ + + +          +I     + +D+  +  L  
Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L E  I  RY+  E+   +R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNRYLEGEMVQGKRNEAIKRLTEGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DIP+   V   D  + G      + +  IGR AR       +      
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSG-----DTYLHRIGRTARAGRKGTAISLVEAH 355

Query: 695 KSIQLA-----IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
             + L      I+E  + R       K    + +   +   +V+     +  A       
Sbjct: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415

Query: 750 AQQLSLSKKKGKA 762
            ++     K    
Sbjct: 416 VKKRHRDTKNIGK 428


>gi|326524209|dbj|BAJ97115.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 764

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 16/188 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT--------GLVDPPVEIRSART-QVEDVYDE 574
            T++ SAT   +++E+    I+   IR T          +   V +  +   ++  + ++
Sbjct: 394 QTLLFSAT-MPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEK 452

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +      G  +L+    K   +++   L +   +V  +H +     R+E ++  + G + 
Sbjct: 453 MPGMIDDGD-VLVFATKKARVDEVENQLNQHGFKVAALHGDKDQASRMETLQKFKSGIYH 511

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   GLDI     V   D  KE  +      I  IGR  R  +     Y     
Sbjct: 512 VLVATDVAARGLDIKSIKTVVNFDIAKEMDMH-----IHRIGRTGRAGDKDGTAYTLITQ 566

Query: 695 KSIQLAID 702
           K  + A +
Sbjct: 567 KESRFAGE 574


>gi|325126224|gb|ADY85554.1| RNA helicase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 453

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 84/211 (39%), Gaps = 25/211 (11%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
              L+   TK+M ++L +YL ++ ++V  +H  +   ER   +R++R G++  +V  +L 
Sbjct: 245 YLALVFANTKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQYVVASDLA 304

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK----------------- 685
             G+D+P   LV   +  K+        +I  IGR  RN                     
Sbjct: 305 ARGIDLPGVSLVINYEIPKD-----LEFIIHRIGRTGRNGLPGHAVTLVREEEMNRVGAL 359

Query: 686 ---VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
               + +     K   LA     RRR+ +   N++ + + + V +KI     P   +   
Sbjct: 360 EYMGVHFDFVEIKDGALAPRTHYRRRDNRTAANRQLDPHMKGVVKKIKSKRKPGYKKKIK 419

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
                 + ++  +  +    H K LRK+   
Sbjct: 420 QAIQEDNRKKRKIEARHEMRHQKHLRKRKRE 450


>gi|310791197|gb|EFQ26726.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 608

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 59/159 (37%), Gaps = 9/159 (5%)

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
            ++    E+     +   + + IN       R ++ V +KR A+DL ++LY        M
Sbjct: 356 NIMQRVFEVAPFDKKT-ALKEHINSLPAC--RTIIFVNSKRTADDLDDFLYNIGFPCTSM 412

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS+   LER   +R  R GK  +L+   +   G+D+     V   D              
Sbjct: 413 HSDRTQLEREASMRAFRAGKSPILIATGISARGIDVKNVNHVINYDLPSMDHG-GIEEYT 471

Query: 673 QTIGRAARNVNSKVILYA-----DTITKSIQLAIDETTR 706
             IGR  R     +         + IT  +   + ET +
Sbjct: 472 HRIGRTGRMGQRGIATSFYTERDEPITSVLVRTLLETKQ 510


>gi|255067653|ref|ZP_05319508.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
           29256]
 gi|255048127|gb|EET43591.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
           29256]
          Length = 457

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKNPEII--EVERVDNQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|324502659|gb|ADY41168.1| ATP-dependent RNA helicase cgh-1 [Ascaris suum]
          Length = 434

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 76/236 (32%), Gaps = 29/236 (12%)

Query: 490 DFHRKATLA--EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-------------PGS 534
           D  R ATL   E    L     +   R  ++       ++ SAT                
Sbjct: 176 DMSRCATLVLDEADKLLSQDFQDILDRVIKFLPPERQIMLYSATFPHTVATFMQNHMNHP 235

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           +E+     + +  I +    V    ++                   Q  + ++   + + 
Sbjct: 236 YEINLMDELTLLGITQFYAYVQEKQKVH---------CLNTLFRKLQINQSIIFCNSTQR 286

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            E L + + E      Y+HS +    R  +  D R G    LV  +LL  G+DI    +V
Sbjct: 287 VELLAKKITEIGYSCYYIHSRMAQNHRNRVFHDFRRGSCRNLVCSDLLTRGIDIQAVNVV 346

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
              D     F R+  + +  IGR+ R  +  + +   T      L   E   R   
Sbjct: 347 INFD-----FPRNAETYLHRIGRSGRFGHLGIAINLITYEDRFNLRRTEAELRTHI 397


>gi|241958200|ref|XP_002421819.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223645164|emb|CAX39763.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 557

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 71/183 (38%), Gaps = 16/183 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E++Q     +   I+ T           +   VE+    ++ + +   
Sbjct: 297 QTLMWSAT-WPKEVQQLARDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKH 355

Query: 575 INLAA-QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +  A  ++  +IL+   TKR  +++T YL         +H +    ER  ++ + R GK 
Sbjct: 356 LESALNERENKILVFASTKRTCDEITTYLRSDGWPALAIHGDKDQSERDWVLDEFRKGKT 415

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+     V   D        +    +  IGR  R   S   +   T 
Sbjct: 416 SIMVATDVAARGIDVKGITHVINYD-----MPGNIEDYVHRIGRTGRGGASGTAISFFTD 470

Query: 694 TKS 696
             S
Sbjct: 471 GNS 473


>gi|291000746|ref|XP_002682940.1| predicted protein [Naegleria gruberi]
 gi|284096568|gb|EFC50196.1| predicted protein [Naegleria gruberi]
          Length = 483

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 11/184 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQVEDVYDEINLAA 579
             +  SAT    +++      + Q I       G V+  V       Q ED    +  A 
Sbjct: 251 QKVFFSAT-MPEKIQNLAMNTLNQPIIVNVGRAGAVNLDVIQEVEYVQEEDKIVYLLQAL 309

Query: 580 QQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           Q+    +L+    K   + + EYL  + +    +HS     ER   I   + GK  VLV 
Sbjct: 310 QKTPPPVLIFSQNKSEVDTICEYLLLKGVEAVSIHSSKDQSEREYAIDSFKQGKKHVLVA 369

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +++ +G+D P    V   D  +E       + +  IGR  RN  + +        +S Q
Sbjct: 370 TDIVSKGIDFPNVKHVINFDMPRE-----IENYVHRIGRTGRNGKTGLATTFINKNQSEQ 424

Query: 699 LAID 702
           + +D
Sbjct: 425 ILLD 428


>gi|224539911|ref|ZP_03680450.1| hypothetical protein BACCELL_04822 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518465|gb|EEF87570.1| hypothetical protein BACCELL_04822 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 435

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 6/126 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R+++   +K   +++T+ L    + V  MHS+++  +R E++ + + G+ ++LV  +++
Sbjct: 245 ERVIIFASSKLKVKEVTKALKMMKLNVGEMHSDLEQAQREEVMHEFKAGRINILVATDIV 304

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAI 701
             G+DI +  LV   D             +  IGR AR  N  V + + +   +S    I
Sbjct: 305 ARGIDIDDIRLVINYDV-----PHDSEDYVHRIGRTARANNDGVALTFVNEKEQSNFKQI 359

Query: 702 DETTRR 707
           +    R
Sbjct: 360 ENFLER 365


>gi|47227893|emb|CAG09056.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 482

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 70/201 (34%), Gaps = 28/201 (13%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            +   +   ++ SAT                +E+   + + ++ + +    V    ++  
Sbjct: 264 GFLSKQRQILLYSATFPLSVQKFMTSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVH- 322

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   + +  E L + + +      Y+H++++   R  
Sbjct: 323 -------CLNTLFSRLQINQSI-IFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNR 374

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +L   G+DI    +V   D  K G      + +  IGR+ R  +
Sbjct: 375 VFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLG-----ETYLHRIGRSGRFGH 429

Query: 684 SKVILYADTITKSIQ-LAIDE 703
             + +   T         I+E
Sbjct: 430 LGLAINLITYDDRFNLKGIEE 450


>gi|115444197|ref|NP_001045878.1| Os02g0146600 [Oryza sativa Japonica Group]
 gi|75325389|sp|Q6Z2Z4|IF4A3_ORYSJ RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 23;
           AltName: Full=eIF4A-2
 gi|45736055|dbj|BAD13081.1| putative translational initiation factor eIF-4A [Oryza sativa
           Japonica Group]
 gi|113535409|dbj|BAF07792.1| Os02g0146600 [Oryza sativa Japonica Group]
 gi|125538069|gb|EAY84464.1| hypothetical protein OsI_05839 [Oryza sativa Indica Group]
 gi|215707096|dbj|BAG93556.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222622164|gb|EEE56296.1| hypothetical protein OsJ_05367 [Oryza sativa Japonica Group]
          Length = 414

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 205 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE 264

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 265 DWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 322

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 323 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 377

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 378 GVAINFVTRDDERMLFDIQR 397


>gi|89073869|ref|ZP_01160376.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89050404|gb|EAR55905.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 437

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 79/223 (35%), Gaps = 26/223 (11%)

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           R+P+  +   L F         T+       ++E       +V +  + TG      E+ 
Sbjct: 185 RMPAPNERLSLLFSA-------TLSYRVKELAFEHMNSPESVVVEPEQKTGHRIQE-ELF 236

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
               Q +    +  +  +   R ++   TK   ED+  +L     RV  +  +V   +R 
Sbjct: 237 YPSNQEKMRLLQTLIEEEWPERAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRE 296

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
            I+     G  D+LV  ++   GL IP    V   D             +  IGR  R  
Sbjct: 297 RILDQFTKGDVDILVATDVAARGLHIPAVTHVFNYD-----LPDDAEDYVHRIGRTGRAG 351

Query: 683 -NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
            +   I +A       + AI+ T       +E   +H I PQS
Sbjct: 352 LSGHSISFACE-----EYAINLTA------IEAYIEHGI-PQS 382


>gi|270004664|gb|EFA01112.1| hypothetical protein TcasGA2_TC010324 [Tribolium castaneum]
          Length = 574

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 65/164 (39%), Gaps = 14/164 (8%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           L+      + QII      +         T++  +  EI   A++  + ++ + TK+  +
Sbjct: 342 LQLSANHNILQIIDVCQEYEKE-------TKLSTLLKEIM--AEKENKTIIFIETKKRVD 392

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           ++T  +         +H +    ER  +++D R GK  +LV  ++   GLD+ +   V  
Sbjct: 393 EITRKMKRDGWPAVCIHGDKSQQERDWVLQDFRTGKAPILVATDVAARGLDVEDVKFVIN 452

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            D     +  +    +  IGR  R+  +       T   + + A
Sbjct: 453 FD-----YPSNSEDYVHRIGRTGRSQRTGTAYTFFTPANANKAA 491


>gi|300362413|ref|ZP_07058589.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03]
 gi|300353404|gb|EFJ69276.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03]
          Length = 485

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 99/259 (38%), Gaps = 19/259 (7%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEI 575
           +  T++ SAT   P     E+         I+   L    ++   +R+   +  D+   +
Sbjct: 174 KHQTLLFSATMPKPILRIGEKFMHDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRL 233

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L  ++   TKR  ++LT  L  R      +H ++   +R+ +++  R GK D+
Sbjct: 234 IDVQNPDL-AVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDI 292

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   N   + +     
Sbjct: 293 LVATDVAARGLDISGVSHVYNYD-----IPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNE 347

Query: 695 KSIQLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                 I++ T ++   L+     +       +  +K+ E++D  L +  A  +  +D  
Sbjct: 348 IGYMRTIEQLTHKKMMPLKPPTDEEAFKGQLSAANKKVTELLDGDLSKYTAEASQLLD-- 405

Query: 752 QLSLSKKKGKAHLKSLRKQ 770
               +     A LK+L K 
Sbjct: 406 -DYSAVDLVAALLKNLSKD 423


>gi|104774414|ref|YP_619394.1| DEAD-box ATP dependent DNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103423495|emb|CAI98397.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 453

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 84/211 (39%), Gaps = 25/211 (11%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
              L+   TK+M ++L +YL ++ ++V  +H  +   ER   +R++R G++  +V  +L 
Sbjct: 245 YLALVFANTKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQYVVASDLA 304

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK----------------- 685
             G+D+P   LV   +  K+        +I  IGR  RN                     
Sbjct: 305 ARGIDLPGVSLVINYEIPKD-----LEFIIHRIGRTGRNGLPGHAVTLVREEEMNRVGAL 359

Query: 686 ---VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
               + +     K   LA     RRR+ +   N++ + + + V +KI     P   +   
Sbjct: 360 EYMGVHFDFVEIKDGALAPRTHYRRRDNRTAANRQLDPHMKGVVKKIKSKRKPGYKKKIK 419

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
                 + ++  +  +    H K LRK+   
Sbjct: 420 QAIQEDNRKKRKIEARHEMRHQKHLRKRKRE 450


>gi|255713670|ref|XP_002553117.1| KLTH0D09328p [Lachancea thermotolerans]
 gi|238934497|emb|CAR22679.1| KLTH0D09328p [Lachancea thermotolerans]
          Length = 551

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 79/200 (39%), Gaps = 17/200 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E++Q     +   I+          +  +   VE+ S   + + +   
Sbjct: 291 QTLMWSAT-WPKEVQQLARDYLHDPIQVNVGSLELAASHNIAQIVEVVSDMEKRDRLLKH 349

Query: 575 INLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +  A++ +  +IL+   TKR  +++T YL +       +H +    ER  ++++ R G  
Sbjct: 350 LETASEDKDSKILIFASTKRTCDEITRYLRQDGWPALAIHGDKAQNERDWVLQEFRTGNS 409

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
            ++V  ++   G+D+     V   D        +    +  IGR  R   +   I +   
Sbjct: 410 PIMVATDVAARGIDVKGINFVINYD-----MPGNIEDYVHRIGRTGRAGATGTAISFFTE 464

Query: 693 ITKSIQLAIDETTRRREKQL 712
             K +   +    R   +Q+
Sbjct: 465 ANKGMGAQLISIMREANQQI 484


>gi|225450277|ref|XP_002267581.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 663

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 73/235 (31%), Gaps = 38/235 (16%)

Query: 480 IPQISGMYRGDFHRKATLAEYGF-----RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           + Q   +   D      + + GF     R+   MD  P            T++ SAT   
Sbjct: 369 MVQYLALDEADR-----MLDMGFEPQIRRIVEQMDMPP-------RGVRQTMLFSATFPK 416

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR-----ILLTV 589
                    +   I    G  D              + D ++   + G        L+ V
Sbjct: 417 EIQRLASDFLANYIFLAVGRSDKR----------SHLMDLLHAQRENGTHGKQALTLVFV 466

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            TK+ A+ L  +L         +H +    ER   +R  + G   +LV  ++   GLDIP
Sbjct: 467 ETKKGADALEHWLCINGFPATSIHGDRSQQEREHALRLFKSGATPILVATDVAARGLDIP 526

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
               V   D             +  IGR  R   +     + +    S+   + E
Sbjct: 527 HVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKTGLATAFFNENNSSLARGLAE 576


>gi|42522912|ref|NP_968292.1| ATP-dependent RNA helicase DbpA [Bdellovibrio bacteriovorus HD100]
 gi|39574108|emb|CAE79285.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 505

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 10/180 (5%)

Query: 524 TTIVVSAT-PGSWE-LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            T++ SAT P S E L +      +Q+I      +  +E     ++  D  + +    QQ
Sbjct: 223 QTVLFSATFPESIEHLSRKYQRHAQQVIIEDEEQN-LIEQLVYDSEDNDKTNVLMRILQQ 281

Query: 582 --GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
                 ++   TK    ++ E L +       +H +++  ER  ++   R G   +LV  
Sbjct: 282 HPSDSTIIFCNTKNAVAEIAERLNDLGAASGCLHGDMEQRERDRVMAMFRNGSHRILVAT 341

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   GLDI    LV   D        S    +  IGR  R   + V +       +++L
Sbjct: 342 DVAARGLDIDNLELVINFD-----LPLSPEIYVHRIGRTGRAGKTGVAVTIAHPKDTLKL 396


>gi|323465797|gb|ADX69484.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus helveticus
           H10]
          Length = 499

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 76/193 (39%), Gaps = 13/193 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEIN 576
             T++ SAT   P     E+         I+   L    ++   +R+  ++  D+   + 
Sbjct: 176 KQTLLFSATMPKPILRIGEKFMKDPAIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLI 235

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                 L  L+   TKR  ++LT  L  R      +H ++    R+ +++  R GK D+L
Sbjct: 236 DVQGPDL-ALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDIL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   + V + +      
Sbjct: 295 VATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEI 349

Query: 696 SIQLAIDETTRRR 708
                I++ T+++
Sbjct: 350 GYMRTIEQLTKKK 362


>gi|145544585|ref|XP_001457977.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425796|emb|CAK90580.1| unnamed protein product [Paramecium tetraurelia]
          Length = 647

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 98/265 (36%), Gaps = 32/265 (12%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII------VEQII 549
            +  +GF      +N       +N  +   ++ SAT   W  E  Q  +      +  I 
Sbjct: 183 QMLNFGF-----QENIEKIMSYFNDRKIQMLLFSATIPDWVKELSQKYMEANTKHINLIK 237

Query: 550 RPTGLVDPPVE---IRSARTQVEDVY-DEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           R        V+   ++ A+ Q+     D +++   +  R ++   TKR   ++  +  + 
Sbjct: 238 RHETQTSTTVKHYALQCAKNQLTGAIGDVVSVYGGRHARTIIFCETKRECNEIILH-SKL 296

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
               + +H ++   +R       + GKF  LV  N+   GLD P+  L+   +  K+   
Sbjct: 297 PAETQPLHGDIPQQQRTVTFEGFKNGKFKCLVATNVAARGLDFPQVDLIIQCNPPKD--- 353

Query: 666 RSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN--- 721
               S I   GR  R       I +      S+   ++   + +  ++   +  +I    
Sbjct: 354 --IESYIHRSGRTGRAGKDGICITFYSKKDMSLIERVERVAKIKFIKISAPQHQDIIKAS 411

Query: 722 -------PQSVKEKIMEVIDPILLE 739
                   Q V ++I+++  P+  E
Sbjct: 412 SRDLQTSLQVVSKEIVDLFQPVAQE 436


>gi|330811885|ref|YP_004356347.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379993|gb|AEA71343.1| Putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 445

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 95/279 (34%), Gaps = 36/279 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L +   +++L           Q+  +   +  R     + GF   L +     P  
Sbjct: 131 TPGRLLDLFRQNAL--------KFNQLQTLVLDEADRM---LDLGFSEELANIYKALP-- 177

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVE 569
                  +  T++ SAT           ++ + +   + P  +    V+  + +   + +
Sbjct: 178 ------KKRQTLLFSATFSDAIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTVDKKRK 231

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                  +   +  ++L+   T+   + L E L    +    +H +     R   +   +
Sbjct: 232 PELFVHLMRKNKWRQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFK 291

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
             +  +LV  ++   GLDI +  LV   D             I  IGR  R  ++   I 
Sbjct: 292 ASEVQILVATDVAARGLDIEDLPLVVNFDLPIV-----AEDYIHRIGRTGRAGSTGEAIS 346

Query: 689 YADTITKSIQLAIDETTRR---REKQLEHNKKHNINPQS 724
                  ++  AI+  TR+   R+ + +   +H   P +
Sbjct: 347 LVCADEVNLLSAIEMLTRQTLTRQMEQDFEPEHR-VPDT 384


>gi|320095784|ref|ZP_08027429.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319977291|gb|EFW08989.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 575

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 69/183 (37%), Gaps = 16/183 (8%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--------DVYDE 574
            T++ SAT PG       + +     IR     D    + + +  V         +V   
Sbjct: 263 HTMLFSATMPGPVVALARKFMEHPTHIRAQDPDDQHQTVNTVKQVVYRVHSLNKVEVLAR 322

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I  +  +G R ++   TKR A  L E L  R   V  +H ++    R + +R  R GK D
Sbjct: 323 ILQSKGRG-RAVIFCRTKRTAARLGEDLAARGFAVGSLHGDLGQGAREQALRAFRNGKVD 381

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           VLV  ++   G+D+ +   V             +   I  IGR  R  NS   + + D  
Sbjct: 382 VLVATDVAARGIDVDDVTHVVNYQC-----PEDEKIYIHRIGRTGRAGNSGTAVTFVDWD 436

Query: 694 TKS 696
              
Sbjct: 437 DTP 439


>gi|319638186|ref|ZP_07992949.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
 gi|317400459|gb|EFV81117.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
          Length = 469

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKDPEII--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|308485730|ref|XP_003105063.1| hypothetical protein CRE_20763 [Caenorhabditis remanei]
 gi|308257008|gb|EFP00961.1| hypothetical protein CRE_20763 [Caenorhabditis remanei]
          Length = 401

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 77/188 (40%), Gaps = 12/188 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +++SAT     LE     + + I        +   G+    V +     + + + D  
Sbjct: 201 QVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDKEEWKFDTLIDLY 260

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +       + +L   T+R  + LT+ + E N  V  MH +++  +R E++++ R G   V
Sbjct: 261 DTLTIT--QAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRV 318

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   GLD+P+  LV++++ D           I   GR  R      I +      
Sbjct: 319 LISTDVWARGLDVPQVSLVSVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKQDDV 376

Query: 696 SIQLAIDE 703
            I   I++
Sbjct: 377 RILRDIEQ 384


>gi|302839493|ref|XP_002951303.1| hypothetical protein VOLCADRAFT_120953 [Volvox carteri f.
           nagariensis]
 gi|300263278|gb|EFJ47479.1| hypothetical protein VOLCADRAFT_120953 [Volvox carteri f.
           nagariensis]
          Length = 414

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 81/200 (40%), Gaps = 18/200 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V++   
Sbjct: 205 YDIFQLLPPKLQVGVFSATLPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVDVDKE 264

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++   T+R  + LTE + ER+  V   H +++   R  I
Sbjct: 265 EWKLDTLCDLYETLAIT--QSVIFANTRRKVDWLTEKMRERDHTVSATHGDMEQNARDVI 322

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 323 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 377

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 378 GVAINFIVKEDERMLQDIQR 397


>gi|172355578|ref|NP_001116486.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Xenopus (Silurana)
           tropicalis]
 gi|171846831|gb|AAI61533.1| ddx52 protein [Xenopus (Silurana) tropicalis]
          Length = 416

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R  +I+  R GK
Sbjct: 211 MRDLVKKGFTPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNVIQSFREGK 270

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     +V   D     F  S    I  IGR  R  +  K + +  
Sbjct: 271 IWVLICTALLARGIDFKGVNMVINYD-----FPTSAVEYIHRIGRTGRAGHRGKAVSFFT 325

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 326 EDDKPMLRSV 335


>gi|25809056|gb|AAN74636.1| DEAD box RNA helicase [Pisum sativum]
          Length = 413

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 81/198 (40%), Gaps = 18/198 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAI 701
            V I + +   +++   I
Sbjct: 377 GVAINFVNKEDEAMLQDI 394


>gi|15221998|ref|NP_175911.1| DEAD box RNA helicase, putative (RH20) [Arabidopsis thaliana]
 gi|75333448|sp|Q9C718|RH20_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 20
 gi|12321578|gb|AAG50841.1|AC073944_8 ethylene-responsive RNA helicase, putative [Arabidopsis thaliana]
 gi|17065338|gb|AAL32823.1| Unknown protein [Arabidopsis thaliana]
 gi|22136216|gb|AAM91186.1| unknown protein [Arabidopsis thaliana]
 gi|332195071|gb|AEE33192.1| DEAD-box ATP-dependent RNA helicase 20 [Arabidopsis thaliana]
          Length = 501

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 15/190 (7%)

Query: 524 TTIVVSAT-PGSWEL-------EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E           + II    ++    +   V++ S  +Q  +   ++
Sbjct: 279 QTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVIS-ESQKYNKLVKL 337

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G RIL+ + TK+  + +T  L         +H +    ER  ++ + R GK  +
Sbjct: 338 LEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPI 397

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  S    +  IGR  R           T+  
Sbjct: 398 MTATDVAARGLDVKDVKYVINYD-----FPGSLEDYVHRIGRTGRAGAKGTAYTFFTVAN 452

Query: 696 SIQLAIDETT 705
           + + A + T 
Sbjct: 453 A-RFAKELTN 461


>gi|312380576|gb|EFR26532.1| hypothetical protein AND_07336 [Anopheles darlingi]
          Length = 608

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 9/128 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A+ L   L    + V  +HS+    ER  ++R  R GK  +L+   L+  
Sbjct: 392 VLVFVQSKDRAQQLFTELIYDGLNVDVIHSDRSQRERDNVVRAFREGKIWILICTELMSR 451

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAI- 701
           G+D     LV   D     F  S  S +  IGR  R       +  +    T +++  + 
Sbjct: 452 GIDFKGVNLVVNYD-----FPPSTISYVHRIGRTGRAGRQGKAITFFTKDDTANLKRYVF 506

Query: 702 -DETTRRR 708
              TTR R
Sbjct: 507 TAATTRYR 514


>gi|289769255|ref|ZP_06528633.1| helicase [Streptomyces lividans TK24]
 gi|289699454|gb|EFD66883.1| helicase [Streptomyces lividans TK24]
          Length = 556

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 66/188 (35%), Gaps = 24/188 (12%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
                   +SAT    E         + I R   +  P             +   I  A 
Sbjct: 285 RYMSQPTHISATSPDDEGA-TVANTKQFIYRAHNMDKPE------------MVARILQAD 331

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +GL  ++   TKR A DL + L +R      +H ++    R + +R  R GK DVLV  
Sbjct: 332 GRGL-AMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCT 390

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS-- 696
           ++   G+D+     V    + +E     + + +  IGR  R       I   D       
Sbjct: 391 DVAARGIDVEGVTHVINYQSPEE-----EKTYLHRIGRTGRAGAKGTAITLVDWDDIPRW 445

Query: 697 --IQLAID 702
             I  A+D
Sbjct: 446 QLINKALD 453


>gi|160881936|ref|YP_001560904.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160430602|gb|ABX44165.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 527

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 91/255 (35%), Gaps = 34/255 (13%)

Query: 524 TTIVVSAT-PGS-------WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT P         ++ +     +V++ +    +     E+R  + +V+ +   +
Sbjct: 179 QTLLFSATMPQPIMDIARTYQKDATIVKVVKKELTVPKIEQYYYEVRP-KNKVDVLSRLL 237

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++ + +  R L+   TKR  ++L   L  R      +H ++K  +R  ++   R GK ++
Sbjct: 238 DMYSPK--RCLVFCNTKRQVDELVTALSGRGFFAEGLHGDLKQQQRDRVMSSFRTGKAEI 295

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+D+ +   V   D       + +   +  IGR  R   +           
Sbjct: 296 LVATDVAARGIDVDDVEAVFNYDV-----PQDEEYYVHRIGRTGRAGRTGRAFTLV---- 346

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
                  E  + R+ Q     K  + P          I  +    A      +D     +
Sbjct: 347 ----VGKEVYKLRDIQRYCKTKIKVMP----------IPSVNDVTAVKAEKILDRINELM 392

Query: 756 SKKKGKAHLKSLRKQ 770
             +     +  +  +
Sbjct: 393 DAEDLTKMISIIEAK 407


>gi|294632189|ref|ZP_06710749.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
 gi|292835522|gb|EFF93871.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
          Length = 473

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 81/238 (34%), Gaps = 33/238 (13%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC----QGIIVEQIIRP 551
            + + GF LP   D       +        ++ SAT      +         +V  +   
Sbjct: 184 QMCDLGF-LPQVADVLDQVHPD-----GQRMLFSATLDRDVDQLVRRYLHDPVVHSVDPS 237

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TG V    E         D Y  I   A +  R+LL + TK   + LT +L    +    
Sbjct: 238 TGTVTTM-EHHVLVVHDPDRYAVITEIAARDGRVLLFLDTKHAVDQLTRHLRASGVHAGA 296

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +HS     +R   +   + G+  VLV  ++   GL + +  LV  +D             
Sbjct: 297 LHSGKSQPQRTRTLAQFKNGQITVLVATDVAARGLHVDDLDLVVNVDP-----PTDPKDY 351

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE--KQLEHNKKHNINPQSVKE 727
           +   GR AR   S  ++   +             RRRE  + +       I P +V +
Sbjct: 352 VHRAGRTARAGESGSVVTLVSAG-----------RRRETSRMMA---GAGIEP-TVTK 394


>gi|114797135|ref|YP_760687.1| putative ATP-dependent DNA helicase recG [Hyphomonas neptunium ATCC
           15444]
 gi|114737309|gb|ABI75434.1| putative ATP-dependent DNA helicase recG [Hyphomonas neptunium ATCC
           15444]
          Length = 692

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 16/202 (7%)

Query: 523 PTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSA-RTQVEDVYDEINLAAQ 580
           P  +V+SATP    L Q   G +   I+        PVE R+   T++EDV + I  A +
Sbjct: 415 PHMLVMSATPIPRTLAQAVHGDLDVSILDEKPPGRKPVETRAVPDTRLEDVIEAIGRALK 474

Query: 581 QGLRILLTVLTKRMAEDLTEYL-------YERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +G R         + +D +  +        E +++   +H  +K  E+   + D R G+ 
Sbjct: 475 RGERAFWVCPRVDIEDDDSSAVVRHAALEEELHVKAGLVHGRLKASEKDAALEDFRTGRT 534

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS--KVILYAD 691
            +LV   ++  G+D+PE  ++ I  A+  G  +    L Q  GR  R       ++LY  
Sbjct: 535 RILVATTVIEVGVDVPEATIMVIERAEGFGLAQ----LHQLRGRVGRGDKPSFCLLLYRP 590

Query: 692 TITKSIQLAIDETTRRREKQLE 713
            +  + +  +D T RR E   E
Sbjct: 591 PLGDTARERLD-TLRRTEDGFE 611


>gi|329768614|ref|ZP_08260099.1| hypothetical protein HMPREF0428_01796 [Gemella haemolysans M341]
 gi|328836447|gb|EGF86110.1| hypothetical protein HMPREF0428_01796 [Gemella haemolysans M341]
          Length = 512

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 19/194 (9%)

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE-------INLA 578
           + +SATP +  ++     I++  IR    + P  +I+  +T+V D   +       I   
Sbjct: 312 VFLSATPSNR-IKASVDEIIKIPIRYHRYLLPVPKIKIEKTEVFDFTKKSKFIEKFIKGR 370

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYE---RNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             +  RIL+ V   +M E    YL      +I + +++SE K   R E IR     K D+
Sbjct: 371 LAKNRRILIFVPEIKMCETAVLYLRNIFPDDIIIDFVYSEDK--NRSEKIRKFYDRKIDI 428

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK---VILYADT 692
            V   +L  G+       V I DA    F +S  +LIQ  GR  R        ++  +D 
Sbjct: 429 FVTTTILERGVTFDYLD-VIIFDAKHINFTKS--ALIQISGRVGRKDYDNSGDIVFLSDK 485

Query: 693 ITKSIQLAIDETTR 706
           I+  ++ AI E   
Sbjct: 486 ISGEMKSAIKEIEY 499


>gi|298708482|emb|CBJ30606.1| eukaryotic initiation factor 4A [Ectocarpus siliculosus]
          Length = 404

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 80/200 (40%), Gaps = 18/200 (9%)

Query: 515 FEEWNCL--RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSA 564
           ++ +  L  R    + SAT     LE     + E +        +   G+    + +   
Sbjct: 195 YDVFQYLPERVQVALFSATMPLDVLEVTNRFMPEPVRILVKKDELTLEGIKQFYIAVDRE 254

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D          + ++   T+R  + L+E + ER+  +  MH ++   ER  I
Sbjct: 255 EWKLDTLCDLYETLTIT--QAIIYCNTRRRVDWLSEKMQERDFTISCMHGDMGQGERDVI 312

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D        ++ + I  IGR+ R    
Sbjct: 313 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGRFGRK 367

Query: 685 KVILYADTITK-SIQLAIDE 703
            V +   T         I+E
Sbjct: 368 GVAINFVTQGDVRYLRDIEE 387


>gi|261380720|ref|ZP_05985293.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava
           NJ9703]
 gi|284796437|gb|EFC51784.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava
           NJ9703]
          Length = 469

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 72/187 (38%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +    +   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKDPETI--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|119605385|gb|EAW84979.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_c [Homo
           sapiens]
          Length = 274

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 17/186 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTG-----LVDPPVEIRSARTQVEDVYDEINLA 578
            T++ SAT         +  +V+ +    G      +D   E+   + + + VY  +   
Sbjct: 22  QTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVY-LLECL 80

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +    +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV 
Sbjct: 81  QKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVA 140

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++  +GLD P    V   D  +E       + +  IGR  R+ N+ +          I 
Sbjct: 141 TDVASKGLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGIATTF------IN 189

Query: 699 LAIDET 704
            A DE+
Sbjct: 190 KACDES 195


>gi|19528473|gb|AAL90351.1| RE28061p [Drosophila melanogaster]
          Length = 798

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 570 DVYDEINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D+   I    +  +    L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R 
Sbjct: 545 DLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRC 604

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            R G   +LV   +   GLDIP    V   D             +  IGR  R  N  V 
Sbjct: 605 FRSGDCPILVATAVAARGLDIPHVKHVINFD-----LPSDVEEYVHRIGRTGRMGNLGVA 659

Query: 688 L 688
            
Sbjct: 660 T 660


>gi|170091668|ref|XP_001877056.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648549|gb|EDR12792.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 396

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 21/185 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               I++SAT     LE     + + I        +   G+    V +     + +   D
Sbjct: 196 ATQVILLSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCD 255

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++   T+R  + LTE +   N  V  MH E+   ER  I+ + R 
Sbjct: 256 LYDTLTIT-----QAVIFCNTRRKVDWLTEKMRASNFTVSSMHGEMVQKERDAIMAEFRG 310

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G   VL+  ++   G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 311 GTSRVLITTDVWARGIDVQQVSLVINYD-----LPANRENYIHRIGRSGRFGRKGVAINF 365

Query: 691 DTITK 695
            T+  
Sbjct: 366 VTVDD 370


>gi|114776507|ref|ZP_01451552.1| Superfamily II DNA and RNA helicase [Mariprofundus ferrooxydans
           PV-1]
 gi|114553337|gb|EAU55735.1| Superfamily II DNA and RNA helicase [Mariprofundus ferrooxydans
           PV-1]
          Length = 414

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 80/223 (35%), Gaps = 27/223 (12%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT         + I+   VE  + P       +E  +     Q ++   +  
Sbjct: 177 KRQNLMFSATYSDEIRALAKTIVHHPVEICVNPANSTATTIEHCLYPVDKQQKNALLKKL 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +      ++L+   TK+ A+ L  +L ++ I    +H +     R   + + +  +  VL
Sbjct: 237 IKDNDWQQVLVFCKTKQAADRLVRFLEQQAISAAAIHGDKSQGARTRALSEFKNSQVQVL 296

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVILYADTITK 695
           V  +L   GLDIP+   V   D             I  IGR  R  V+ + +        
Sbjct: 297 VATDLAARGLDIPQLPQVVNYD-----LPHVAQDYIHRIGRTGRAGVSGQAVSLVCADEF 351

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
               A++     R  Q           Q +  K ME ++P+  
Sbjct: 352 DELAAVE-----RVIQ-----------QLITRKTMEGLEPVHA 378


>gi|308081024|ref|NP_001183303.1| hypothetical protein LOC100501699 [Zea mays]
 gi|238010618|gb|ACR36344.1| unknown [Zea mays]
          Length = 643

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 19/175 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT    E+++     +   I          T L+   VE      +   + D I
Sbjct: 365 QTMLFSAT-FPKEIQRMAADFLADYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSYLMDLI 423

Query: 576 NLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +     G        L+ V TKR A+ L ++L+        +H +    ER   +R  + 
Sbjct: 424 HAQKANGTHGKHALTLVFVETKRGADALEDWLFRNGFPATSIHGDRTQQEREHALRSFKS 483

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           G   +LV  ++   GLDIP    V   D             +  IGR  R   S 
Sbjct: 484 GATPILVATDVAARGLDIPHVAHVINFD-----LPNDIDDYVHRIGRTGRAGKSG 533


>gi|167769539|ref|ZP_02441592.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM
           17241]
 gi|167668507|gb|EDS12637.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM
           17241]
          Length = 572

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 78/206 (37%), Gaps = 17/206 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK M + LTEYL +   R   +H ++K   R ++++  R GK  +LV  ++  
Sbjct: 244 RAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRDGKTRILVATDVAA 303

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            G+D+     V   D  +E         I   GRA R   S  ++       +I+     
Sbjct: 304 RGIDVENIEAVFNFDIPQE--FEHYIHRIGRTGRAGRTGMSHTLVCGARQVDTIRQL--- 358

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
              RR      N      P  +     E++     + AA    +++A +     ++  A 
Sbjct: 359 ---RRFI----NADIREAPLPIG---DEIVRKKREKFAARVARTLEADEYGKWGEQLDAI 408

Query: 764 LKSLRKQMHLAADNLNFEEAARIRDE 789
                  M   A  L    AA  RD+
Sbjct: 409 AAERGCDMRDIACALAQMIAA--RDK 432


>gi|116514512|ref|YP_813418.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093827|gb|ABJ58980.1| Superfamily II DNA and RNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 453

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 25/211 (11%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
              L+   TK+M ++L +YL ++ ++V  +H  +   ER   +R++R G++  +V  +L 
Sbjct: 245 YLALVFANTKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQYVVASDLA 304

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK----------------- 685
             G+D+P   LV   +  K+        +I  IGR  RN                     
Sbjct: 305 ARGIDLPGVSLVINYEIPKD-----LEFIIHRIGRTGRNGLPGHAVTLVREEEMNRVGAL 359

Query: 686 ---VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
               + +     K   LA     RRR+ +   N + + + + V +KI     P   +   
Sbjct: 360 EYMGVHFDFVEIKDGALAPRTHYRRRDNRTAANLQLDPHMKGVVKKIKSKRKPGYKKKIK 419

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
                 + ++  +  +    H K LRK+   
Sbjct: 420 QAIQEDNRKKRKIEARHEMRHQKHLRKRKRE 450


>gi|19387219|gb|AAL87140.1|AF479821_1 DEAD box RNA helicase Vasa [Hyphessobrycon ecuadoriensis]
          Length = 397

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 21/200 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLR--PTTIVVSATPGSWELEQCQGIIVEQIIR--- 550
            + + GF      D R L        +    T++ SAT            +    +    
Sbjct: 122 RMLDMGFE----QDMRKLVSSPGMPAKEERQTLMFSATYPEXIQRLAADFLKXDYLFLAV 177

Query: 551 -----PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
                    V+  +      ++ E + + +        R ++ V TKR A+ +  +L + 
Sbjct: 178 GXVGGACSDVEQQIIQVDQYSKREQLLELLKTTGT--ERTMVFVETKRSADFIATFLCQE 235

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +    +H + +  ER + + D R G+  VLV  ++   GLDI     V   D       
Sbjct: 236 KVPTTSIHGDREQREREKALSDFRTGQCPVLVATSVAARGLDIEHVQHVVNFD-----LP 290

Query: 666 RSKTSLIQTIGRAARNVNSK 685
            +    +  IGR  R  N+ 
Sbjct: 291 NNIEEYVHRIGRTGRCGNTG 310


>gi|302308420|ref|NP_985329.2| AFL221Cp [Ashbya gossypii ATCC 10895]
 gi|299790624|gb|AAS53153.2| AFL221Cp [Ashbya gossypii ATCC 10895]
          Length = 557

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 77/199 (38%), Gaps = 16/199 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E++Q     +   I+          +  +   VE+ S   + + +   
Sbjct: 294 QTLMWSAT-WPKEVQQLARDYLHDPIQVNIGSLELAASHTITQLVEVVSDFDKRDRLVKH 352

Query: 575 INLA-AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           + +A   +  +I++   TKR  +++T YL +       +H + +  ER  ++ + R G+ 
Sbjct: 353 LEIASKDKDSKIIIFASTKRTCDEITSYLRQDGWPALAIHGDKQQQERDWVLNEFRTGRS 412

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+     V   D        +    +  IGR  R   +   +   T 
Sbjct: 413 PIMVATDVAARGIDVKGINFVINYD-----MPGNIEDYVHRIGRTGRAGATGTAISFFTE 467

Query: 694 TKSIQLAIDETTRRREKQL 712
                 A   +  R  KQ 
Sbjct: 468 ANKTLGAQLISIMREAKQE 486


>gi|313219016|emb|CBY43265.1| unnamed protein product [Oikopleura dioica]
          Length = 393

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 64/181 (35%), Gaps = 15/181 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIR----SARTQVEDVYDEI 575
            T++ SAT    E++      ++  I  T    G     +  +        ++  + D +
Sbjct: 120 QTLMFSAT-FPKEIQHLARDFLDNYIFLTVGRVGSTSQNITQKVVWVDENDKINFLTDLL 178

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A  Q    ++   TK+ A+ L  YLY+R  R   +H +    ER   ++  R     V
Sbjct: 179 T-ATDQNTCFVVFTETKKGADYLDNYLYDRGFRSTCIHGDRNQREREGALKSFREAVTPV 237

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   +   GLDIP    V   D             +  IGR  R  N  +         
Sbjct: 238 LVATAVAARGLDIPNVRHVINFD-----LPSDIDEYVHRIGRTGRVGNIGLATSFFNDKN 292

Query: 696 S 696
           S
Sbjct: 293 S 293


>gi|294893710|ref|XP_002774608.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239880001|gb|EER06424.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 520

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D    +      G ++L+   TKR A+DLT  L         +H + K  ER  ++ + +
Sbjct: 345 DRLKVLLERVMDGSKLLIFTDTKRGADDLTRTLRMDGWPALCIHGDKKQEERDWVLHEFK 404

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GK  +++  ++   GLD+ +   V   D    G +      I   GRA    N+     
Sbjct: 405 SGKSPIMIATDVASRGLDVKDIRHVVNYDFP--GQIEDYVHRIGRTGRAGCKGNAYTFFT 462

Query: 690 ADTI 693
            D I
Sbjct: 463 PDKI 466


>gi|188585530|ref|YP_001917075.1| DEAD/DEAH box helicase domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350217|gb|ACB84487.1| DEAD/DEAH box helicase domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 474

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 92/253 (36%), Gaps = 29/253 (11%)

Query: 523 PTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------EDVYD 573
             T++ SAT PG  +    Q +   +IIR        + + S   Q          DV+ 
Sbjct: 177 KQTLMFSATMPGPIKSLAEQFMNDPEIIR---TKTKEITVPSIEQQYVEVKEGDKFDVFC 233

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +   +Q   + ++   TKR  ++L + L +R      +H ++   +R  +I++ R G  
Sbjct: 234 RLVD-SQSPEKAIVFGRTKRRVDELYQALKKRGYFAEGIHGDMPQTKRDHVIKNFRTGAT 292

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           ++LV  ++   GLD+     +   D       +   S +  IGR  R   S   +   T 
Sbjct: 293 ELLVATDVASRGLDVTGISHIYNFD-----IPQDADSYVHRIGRTGRAGQSGAAVTLVTP 347

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
            +   L + E + +R+            P+  K  + E ++                +  
Sbjct: 348 REKGHLNLIEQSIKRQI-----------PRRPKPSVDEALEGKQKIAVEKLLSEAKDKNA 396

Query: 754 SLSKKKGKAHLKS 766
               K  +  L+ 
Sbjct: 397 RQYHKLAEELLEE 409


>gi|154298930|ref|XP_001549886.1| hypothetical protein BC1G_11712 [Botryotinia fuckeliana B05.10]
 gi|160380630|sp|A6SFV4|DBP8_BOTFB RecName: Full=ATP-dependent RNA helicase dbp8
 gi|150857617|gb|EDN32809.1| hypothetical protein BC1G_11712 [Botryotinia fuckeliana B05.10]
          Length = 545

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 105/293 (35%), Gaps = 29/293 (9%)

Query: 491 FHRKATLAEYGFRLPS--CMDNRPLRFEEWNCLRP----TTIVVSAT--PGSWELEQCQG 542
             R   L E    L S       P   E  + L P     T++ +AT  P    L+    
Sbjct: 262 RVRMVVLDEADRLLASGSVGSMLPDVEECLSILPPPAKRQTLLFTATVTPEVRALKDMPR 321

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVE----------DVYDEINLAAQQGLRILLTVLTK 592
              +  +    +    + I  +  Q+            ++  +         I++     
Sbjct: 322 TPGKLPVFVCEVDTQALAIPPSLNQMHLQVPVTHREHYLHMFLLTEKNLPKSIVIFCNRT 381

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
             A+ LT  L   + RV  +HS++   +RI+ +   R     +LV  ++   GLDIPE G
Sbjct: 382 ATADYLTHLLRLLDHRVTALHSKLPQRQRIDNLGRFRASAARILVATDVAARGLDIPEVG 441

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRREKQ 711
           LV   D  ++         I  +GR AR       + +       +  AI+    R  +Q
Sbjct: 442 LVINYDIPRD-----PDDYIHRVGRTARAGRKGEAVSFVGQRDVQLIQAIEN---RVGRQ 493

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
           +E   +  +N ++    I E +  +  +         + +++   +K+G   L
Sbjct: 494 MEAWAEDGVNLET--RVIRESLKLVGEKKREAMLEIEEGREVGGKRKRGMKKL 544


>gi|312864570|ref|ZP_07724801.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei
           F0415]
 gi|311099697|gb|EFQ57910.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei
           F0415]
          Length = 521

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 99/261 (37%), Gaps = 23/261 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
            T++ SAT     +++     +++     I    L    VE    R +  + +D +    
Sbjct: 176 QTLLFSAT-MPDAIKRIGVKFMKEPEHVKIAAKELTSDNVEQFYIRVKEREKFDTMTRLI 234

Query: 580 --QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ +IRD +    D+LV
Sbjct: 235 DIEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +  
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEMG 349

Query: 698 QLAIDET-TRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
            L+I E  T++R K       Q     K  +  + ++    +       +      I + 
Sbjct: 350 YLSIIENLTKKRMKGLKPATAQEAFQAKKAVALKKIERDFADETIRSNFDKFKGDAIKLA 409

Query: 750 AQQLSLSKKKGKAHLKSLRKQ 770
            +    S ++   ++ SL  Q
Sbjct: 410 GEF---SPEELALYILSLTVQ 427


>gi|255580688|ref|XP_002531166.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223529236|gb|EEF31209.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 585

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 64/177 (36%), Gaps = 19/177 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYD 573
           R  T++ SAT    E+++     +   I          T L+   VE      +   + D
Sbjct: 315 RRQTMLFSAT-FPKEIQRLASDFLASYIFLAVGRVGSSTDLIVQRVEFVHETDKRSHLMD 373

Query: 574 EINLAAQ-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            ++   +     +    L+ V TK+ A+ L  +L         +H +    ER   +R  
Sbjct: 374 LLHAQRETEINIKHSLTLVFVETKKGADSLENWLCVNGFPATTIHGDRTQQEREMALRSF 433

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           + GK  +LV  ++   GLDIP    V   D             +  IGR  R   + 
Sbjct: 434 KSGKTPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKTG 485


>gi|170053024|ref|XP_001862487.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
 gi|167873709|gb|EDS37092.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
          Length = 935

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 59/159 (37%), Gaps = 14/159 (8%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           L       + QI+          E      ++  +  EI  A+    +I++ V TK+  E
Sbjct: 466 LNLSANHNIHQIV-------DICEENEKEGKLLSLLKEI--ASDVNNKIIIFVETKKKVE 516

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DL + +         +H +    ER  +++D R GK  +LV  ++   GLD+ +   V  
Sbjct: 517 DLLKNIVRDGYGATSIHGDKSQSERDYVLQDFRHGKSTILVATDVAARGLDVEDVKYVIN 576

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            D     +  S    I  IGR  R  +        T   
Sbjct: 577 FD-----YPNSSEDYIHRIGRTGRCSSFGTAYTFFTPGN 610


>gi|332361718|gb|EGJ39522.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1056]
          Length = 523

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVD-QYYIRVKENEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    S ++   ++ SL  Q
Sbjct: 409 AAEF---SPEELSMYILSLTVQ 427


>gi|114667864|ref|XP_001173161.1| PREDICTED: ATP-dependent RNA helicase ROK1 isoform 3 [Pan
           troglodytes]
          Length = 507

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 311 MRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 370

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K I +  
Sbjct: 371 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITFFT 425

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 426 EDDKPLLRSV 435


>gi|15889610|ref|NP_355291.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
 gi|15157502|gb|AAK88076.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 502

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 71/189 (37%), Gaps = 14/189 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVE--DVYDE 574
           +  T++ SAT      E     + + I   + P G     VE  +     + +  D+  +
Sbjct: 192 KRQTLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKK 251

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                  G R ++ + TK  AE L ++L     +V  +H      +R   ++  + G+  
Sbjct: 252 SLNENPDG-RSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIK 310

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           VLV  ++   G+DIP    V   D           + +  IGR AR     + I +    
Sbjct: 311 VLVATDVAARGIDIPAVTHVFNYD-----LPEVPDAYVHRIGRTARAGRDGIAIAFCAPD 365

Query: 694 TKSIQLAID 702
              +   I+
Sbjct: 366 ETRLLHDIE 374


>gi|74177868|dbj|BAE39019.1| unnamed protein product [Mus musculus]
          Length = 595

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G +  +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 404 MRELVKKGFKPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 463

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K + +  
Sbjct: 464 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNRGKAVTFFT 518

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 519 EDDKPLLRSV 528


>gi|317124106|ref|YP_004098218.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043]
 gi|315588194|gb|ADU47491.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043]
          Length = 605

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 75/193 (38%), Gaps = 15/193 (7%)

Query: 523 PTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIR----SARTQVEDVYDEI 575
               + SAT  +      +  +   VE  ++      P +  R    S   +V+ +   +
Sbjct: 201 KQVALFSATMPAQIRRISKQHLTDPVEITVKAKTTTAPNITQRYLIVSYPQKVDALTRIL 260

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +   +G  +++ V TK   E L E L  R      ++ ++   +R   +  LR GK D+
Sbjct: 261 EVENFEG--MIVFVRTKNETETLAEKLRARGFSAAAINGDIVQAQRERTVDQLRSGKLDI 318

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLD+     V   D           S +  IGR  R   S   I +     
Sbjct: 319 LVATDVAARGLDVERISHVVNFD-----IPTDTESYVHRIGRTGRAGRSGDAISFVTPRE 373

Query: 695 KSIQLAIDETTRR 707
           + +  AI++ TR+
Sbjct: 374 RHLLKAIEKATRQ 386


>gi|218290125|ref|ZP_03494287.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239834|gb|EED07023.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 465

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 15/136 (11%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   TKR  +DL E L  R      +H ++   +R  ++R  R  + ++LV  ++   G
Sbjct: 259 IIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVATDVAARG 318

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+ +   V   D       +   S +  IGR  R     + +   T             
Sbjct: 319 LDVDDVTHVINYDV-----PQDPESYVHRIGRTGRAGKRGLAITLVTPR----------E 363

Query: 706 RRREKQLEHNKKHNIN 721
            +  KQ+E   K  I 
Sbjct: 364 YKLLKQIEREIKQKIT 379


>gi|194903791|ref|XP_001980939.1| GG17436 [Drosophila erecta]
 gi|190652642|gb|EDV49897.1| GG17436 [Drosophila erecta]
          Length = 793

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 64/177 (36%), Gaps = 17/177 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE----------IRSARTQVEDVYD 573
            T++ SAT      E     +   I    G V    E              R+ + D+  
Sbjct: 484 QTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLS 543

Query: 574 EINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            I    +  +    L+ V TK+ A+ L E+LY+ N  V  +H +    ER E +R  R G
Sbjct: 544 SIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSG 603

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              +LV   +   GLDIP    V   D             +  IGR  R  N  V  
Sbjct: 604 DCPILVATAVAARGLDIPHVKHVINFD-----LPSDVEEYVHRIGRTGRMGNLGVAT 655


>gi|124430723|ref|NP_001037582.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
 gi|95102742|gb|ABF51312.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
          Length = 539

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 93/255 (36%), Gaps = 37/255 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ + +          + + + +   +  R     + GF         P   +
Sbjct: 237 TPGRLIDFLEKGTT--------NLQRCTYLVLDEADRM---LDMGFE--------PQIRK 277

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEI---RS 563
               +RP   T++ SAT      +  +  + + I    G +           V+I     
Sbjct: 278 IIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHE 337

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              ++  +  EI  + + G + ++ V TKR AE+++  +         MH +    ER E
Sbjct: 338 KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 397

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++   + G+  +LV  ++   GLD+     V   D     +  S    I  IGR  R+ +
Sbjct: 398 VLYQFKEGRASILVATDVAARGLDVDGIKYVINFD-----YPNSSEDYIHRIGRTGRSKS 452

Query: 684 SKVILYADTITKSIQ 698
                   T + S Q
Sbjct: 453 KGTSYAFFTPSNSRQ 467


>gi|260752364|ref|YP_003225257.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258551727|gb|ACV74673.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 506

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 89/253 (35%), Gaps = 16/253 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT  P   +L        +QI         T +    +E+   R++ + + D +
Sbjct: 193 QTLLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSP-RSKKKKLCDML 251

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A++    ++    K     L   L ++   V  +H ++   ER   +   + G+  V
Sbjct: 252 --RAEKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISV 309

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLD+     V   D             I  IGR  R   S   L   T   
Sbjct: 310 LVASDIAARGLDVKGISHVFNFDV-----PTHPDDYIHRIGRTGRGGASGEALTFVTPAD 364

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
              +   E     E     N+K N  P   +E +       + E +A ++     ++   
Sbjct: 365 EEAITAIEKLMGVEIPRLGNRKKNAYPSKSEETVSPKQAKPVQEKSAASSPRKAPRKTET 424

Query: 756 SKKKGKAHLKSLR 768
            KK  +  L S+ 
Sbjct: 425 PKKLPEDRLDSVE 437


>gi|161506849|ref|YP_001576803.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus DPC
           4571]
 gi|160347838|gb|ABX26512.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus DPC
           4571]
          Length = 503

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 76/193 (39%), Gaps = 13/193 (6%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEIN 576
             T++ SAT   P     E+         I+   L    ++   +R+  ++  D+   + 
Sbjct: 180 KQTLLFSATMPKPILRIGEKFMKDPAIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLI 239

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                 L  L+   TKR  ++LT  L  R      +H ++    R+ +++  R GK D+L
Sbjct: 240 DVQGPDL-ALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDIL 298

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   + V + +      
Sbjct: 299 VATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEI 353

Query: 696 SIQLAIDETTRRR 708
                I++ T+++
Sbjct: 354 GYMRTIEQLTKKK 366


>gi|124485198|ref|YP_001029814.1| hypothetical protein Mlab_0371 [Methanocorpusculum labreanum Z]
 gi|124362739|gb|ABN06547.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
           Z]
          Length = 656

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 78/198 (39%), Gaps = 18/198 (9%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPT-------GLVDPPVEIRSARTQVEDVYDEI 575
            TI+ SAT P        +     Q ++ T        +    +E+R  R ++E +   +
Sbjct: 181 QTILFSATMPQPILDITRRFQRDPQFVKITRKELTVPQIEQTYIEVRE-RDKLEALCRTL 239

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++        L+   TKR  +DL   +  R   V  +H ++K  +R  ++   R G  DV
Sbjct: 240 DM--NNPELALVFCNTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDV 297

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   G+D+ +  +V   D       +     +  IGR AR   +   +      +
Sbjct: 298 LIATDVAARGIDVDDVDIVFNYDV-----PQDVEYYVHRIGRTARAGRTGKSVTFVAPRE 352

Query: 696 SIQLAIDETTRRREKQLE 713
             +  + +  R  + Q+ 
Sbjct: 353 IYK--LRDIQRYAKIQIA 368


>gi|119578005|gb|EAW57601.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52, isoform CRA_c [Homo
           sapiens]
          Length = 491

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 295 VRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 354

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K I +  
Sbjct: 355 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITFFT 409

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 410 EDDKPLLRSV 419


>gi|324510721|gb|ADY44481.1| ATP-dependent RNA helicase abstrakt [Ascaris suum]
          Length = 462

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 83/248 (33%), Gaps = 32/248 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++   +          + + S +   +  R     + GF      +     F 
Sbjct: 188 TPGRLLDFLESGTT--------NLRRCSYLVLDEADRM---LDMGFE-----EEIRTIFS 231

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL-------VDPPVEIRSARTQVE 569
            +   R  T++ SAT         +  +V  II   G        V   +E   A  ++ 
Sbjct: 232 FFKGQR-QTLLFSATMPRKIQNFARSALVRAIIVNVGRAGAASLNVLQEIEYVRADEKLT 290

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + D +        R+L+    K   +++ EYL  + + V  +H      +R   +   R
Sbjct: 291 RILDCLQKTPP---RVLIFAEKKSDVDNIYEYLLVKGVDVASLHGGKDQKDRHTGVDAFR 347

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+ DVLV  ++  +GLD      V   D           + +  IGR  R+    +   
Sbjct: 348 RGEKDVLVATDVASKGLDFENIQHVINFD-----MPEDIENYVHRIGRTGRSGKKGMATT 402

Query: 690 ADTITKSI 697
                  +
Sbjct: 403 FVNRRADM 410


>gi|325293690|ref|YP_004279554.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
 gi|325061543|gb|ADY65234.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
          Length = 500

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 71/189 (37%), Gaps = 14/189 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVE--DVYDE 574
           +  T++ SAT      E     + + I   + P G     VE  +     + +  D+  +
Sbjct: 188 KRQTLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKK 247

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                  G R ++ + TK  AE L ++L     +V  +H      +R   ++  + G+  
Sbjct: 248 SLNENPDG-RSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIK 306

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           VLV  ++   G+DIP    V   D           + +  IGR AR     + I +    
Sbjct: 307 VLVATDVAARGIDIPAVTHVFNYD-----LPEVPDAYVHRIGRTARAGRDGIAIAFCAPD 361

Query: 694 TKSIQLAID 702
              +   I+
Sbjct: 362 ETRLLHDIE 370


>gi|302524385|ref|ZP_07276727.1| cold-shock DEAD-box protein [Streptomyces sp. AA4]
 gi|302433280|gb|EFL05096.1| cold-shock DEAD-box protein [Streptomyces sp. AA4]
          Length = 522

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 92/258 (35%), Gaps = 34/258 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +          ++ H+ + +I G+   +        + GF LP     R LR  
Sbjct: 120 TPGRLLD--------LAEQQHLVLGKIRGLVLDEADEM---LDLGF-LPDI--ERILRMV 165

Query: 517 EWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE------ 569
                   T++ SAT PG   +       + Q        +    I     Q        
Sbjct: 166 PDER---QTMLFSATMPGP--IITLARTFLNQPTHIRAEENDAGAIHERTAQFVYRAHSM 220

Query: 570 DVYDEINLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D  + I  A Q   R   ++   TKR A+ + + L ER      +H ++    R + +R 
Sbjct: 221 DKTELIARALQAEGRGLTMIFSRTKRTAQKIADDLVERGFAAAAVHGDLGQGAREQALRA 280

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV- 686
            R GK DVLV  ++   G+DI +   V             + + +  IGR  R   + V 
Sbjct: 281 FRSGKVDVLVATDVAARGIDIDDVTHVINYQC-----PEDEKTYVHRIGRTGRAGRTGVA 335

Query: 687 ILYADTITKSIQLAIDET 704
           I   D   ++    I +T
Sbjct: 336 ITLVDWDEEARWKLISDT 353


>gi|223939310|ref|ZP_03631190.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
 gi|223892023|gb|EEF58504.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
          Length = 412

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/279 (21%), Positives = 97/279 (34%), Gaps = 35/279 (12%)

Query: 445 YSRYLTGRNPG-----EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAE 499
           Y R +     G       P  L +++   +            QI  +   +  R     +
Sbjct: 109 YGRQMDALKAGVDIIIATPGRLLDHLERGTC--------KFDQIKYLVLDEADRM---LD 157

Query: 500 YGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPP 558
            GF LP        R  +       T + SAT P   E      +   Q I   G    P
Sbjct: 158 MGF-LPDVR-----RIVDKCPRDRHTSLFSATVPPQIETLIKWAMKNPQTIE-IGARRSP 210

Query: 559 VE-----IRSA-RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
            E     I      Q  D+  E+         +++   TK  A+ +   L   N  V  +
Sbjct: 211 AETVKHVIYPVAEDQKSDLLRELLERVNYD-SVIVFCRTKHRADRIAILLKRNNHAVAVL 269

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           HS     ER + ++  R G+F+VLV  ++   GLDI +   V   D  +          I
Sbjct: 270 HSNRTQREREDALKGFRNGRFEVLVATDIAARGLDIADVSHVINYDVPQH--PEDYIHRI 327

Query: 673 QTIGRAARNVNSKVILYADT--ITKSIQLAIDETTRRRE 709
              GRAA   ++  ++ A+     +SI+  I +   R +
Sbjct: 328 GRTGRAAATGDAFTLMVAEDSQHVQSIERFIGKKVERIK 366


>gi|145355346|ref|XP_001421924.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582163|gb|ABP00218.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 421

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 8/147 (5%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVK 617
           VE+     + +     +     +    ++   TKR  + L   L +        +H +  
Sbjct: 236 VEVLEEEEKFDRCVAILKKELGKDDTCIMFAGTKRRCDFLDRRLKQSGFSSAGAIHGDKD 295

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER  ++ + R G+ ++LV  ++   GLDIP    V + D     F       +  IGR
Sbjct: 296 QYEREMVLDNFRRGRGNILVATDVAARGLDIPGVAAVLVYD-----FPLQVEDYVHRIGR 350

Query: 678 AARNVNSK--VILYADTITKSIQLAID 702
             R          +      +    ID
Sbjct: 351 TGRAGKEGKAFTFFTKDNRGAANELID 377


>gi|320166262|gb|EFW43161.1| ATP dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 633

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L  V TKR A+ L ++LY        +H +    ER + +R  R G   +LV   +   
Sbjct: 435 TLCFVETKRAADSLEDFLYHEGFPAASIHGDRSQREREDALRTFRSGHTPILVATAVAAR 494

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
           GLDIP    V   D   E         +  IGR  R  N      + +   +S+   +
Sbjct: 495 GLDIPNVKHVINYDLPTE-----IDEYVHRIGRTGRVGNLGLSTSFFNEKNRSLAREL 547


>gi|307104817|gb|EFN53069.1| eukaryotic initiation factor 4A (ATP-dependent RNA helicase eIF4A)
           [Chlorella variabilis]
          Length = 410

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 77/192 (40%), Gaps = 17/192 (8%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 201 YDIFQLLPPKIQVGVFSATLPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVERE 260

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++   T+R  + LT+ + ER+  V   H ++    R  I
Sbjct: 261 DWKLDTLCDLYETLAIT--QSVIFANTRRKVDWLTDKMRERDHTVSATHGDMDQNTRDVI 318

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D        +  + +  IGR+ R    
Sbjct: 319 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPNNPENYLHRIGRSGRFGRK 373

Query: 685 KVILYADTITKS 696
            V +   T    
Sbjct: 374 GVAINFVTNDDE 385


>gi|189235329|ref|XP_975300.2| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
           [Tribolium castaneum]
          Length = 553

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A+ L   L    I V  +H++   L+R   +R  R G+  VL+   L+  
Sbjct: 365 VLVFVQSKDRAQQLFNELIYDGINVDAIHADRTQLQRDNTVRSFREGRIWVLICTELMAR 424

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           G+D     LV   D     F  S  S +  +GRA R   +   +   T+  ++ L
Sbjct: 425 GIDFKGVNLVINYD-----FPPSAISYVHRVGRAGRAGRTGKAITFFTVENTVNL 474


>gi|316934368|ref|YP_004109350.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315602082|gb|ADU44617.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 469

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 61/190 (32%), Gaps = 17/190 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE--QIIRPTGLVDPPVEI--------RSARTQVEDVYD 573
            T+  +AT    E+ +     +   + I  +      V +        R    + E +  
Sbjct: 179 QTLFFTAT-MPTEIRRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRH 237

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I  A       ++    KR    L   L      V  +H ++    R+  +   R G+ 
Sbjct: 238 LIRGATDLK-NAIIFCNRKREVALLARSLQRHGFSVGALHGDMDQTARMAALEAFRKGEL 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIPE   V   D             +  IGR  R   +   L     
Sbjct: 297 PILVASDVAARGLDIPEVSHVFNFDV-----PHHPDDYVHRIGRTGRAGRAGTALTIVAP 351

Query: 694 TKSIQLAIDE 703
           +    +A  E
Sbjct: 352 SDQKSMAAIE 361


>gi|255527323|ref|ZP_05394201.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|255508970|gb|EET85332.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
          Length = 527

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 89/252 (35%), Gaps = 33/252 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA----- 578
            T++ SAT    E+ +     ++  ++   +V   + +   +    +V  +         
Sbjct: 178 QTLLFSAT-MPKEIAKLASKYMKNEVKHIKIVKNSLTVEKIKQYYYEVKHKDRFESLCRI 236

Query: 579 --AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               +    ++   TKR  ++L E +  R   V  MH ++   +R+  +R  + G  D L
Sbjct: 237 LDIDEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGTLDFL 296

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT---- 692
           V  ++   G+D+ +   V   D       +   S +  IGR  R     +     T    
Sbjct: 297 VATDVAARGIDVDDVSHVINYD-----LPQDMESYVHRIGRTGRANKEGIAYSLVTPREY 351

Query: 693 -ITKSIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
            + K ++       +R+E        + ++N        S+ + +   ++    +D    
Sbjct: 352 IMIKQLEKFTKSKIKRKEIPTLDEIFEAKYN--------SMLKDVKNTLEQNDYKDFIPV 403

Query: 745 NISIDAQQLSLS 756
              +D     + 
Sbjct: 404 ATGLDDDYNLVD 415


>gi|261365074|ref|ZP_05977957.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
           25996]
 gi|288566497|gb|EFC88057.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
           25996]
          Length = 457

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   +V   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKNPEVV--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|224373507|ref|YP_002607879.1| transcription-repair coupling factor [Nautilia profundicola AmH]
 gi|223589861|gb|ACM93597.1| transcription-repair coupling factor [Nautilia profundicola AmH]
          Length = 974

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 18/214 (8%)

Query: 186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI 245
           AKV E +Q+    +  +    A L  E   +     V +                  T  
Sbjct: 3   AKVYEYLQKQKTNIITSAKKEADLTGEVYKYLNIPYVVFPDFRA-------------TLG 49

Query: 246 EKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQ 305
           +   S   +I  + + A       N   +    + +  +          ++++ GD +  
Sbjct: 50  DDLRSFRNEIFELNN-ALFKYYNDNSFFISPYTTILKKL--PHKRYYQSIEIEFGDDINL 106

Query: 306 KELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
            EL   L+   Y+  DI   +G     GD  +I+P +LE    RVS+F  ++E I  F  
Sbjct: 107 NELKEKLILWGYEHVDIVSEKGEVSFRGDIFDIWPINLE-KPVRVSLFDTEVESIRIFEE 165

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYI 399
            + + I  +E+  I   +     +   +  ++ I
Sbjct: 166 TSQKSIEEIESFTIIP-AIAALEKEEYDQILEKI 198



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 73/199 (36%), Gaps = 19/199 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            T+ +SATP    L      +         P G       ++     +  + + I    +
Sbjct: 614 HTLYMSATPIPRTLNMALSQVKSISTLETAPKGKQSTKTFVKEWNENL--IKEVILRELR 671

Query: 581 QGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +G +I          E    +L + L +  I V  +H+++   +  + + D   GK+D+ 
Sbjct: 672 RGGQIFYIYNNIAYIEQKKKELQKILPDLRILV--LHAKLTPAQIEKGLVDFIAGKYDLA 729

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +   ++  G+ IP    V + +ADK G       L Q  GR  R  +     +       
Sbjct: 730 LTTTIVESGIHIPNVNTVIVENADKFGI----ADLHQIRGRVGRGKHEGYAYFLVKNKDE 785

Query: 697 IQLAIDETTRRREKQLEHN 715
               + E  ++R   LE N
Sbjct: 786 ----LSEDAKKRLLALEEN 800



 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 20/148 (13%)

Query: 92  REISEQTMTPSVQALAR--------------LIQSDNPLLKNGKIWTPHRSWSINNHSKD 137
           + I+   + P++  L +              L  + + +    +         I  + + 
Sbjct: 400 KYIAPGGVIPTLDKLGKGTFAKKREKIKEKILSMAADIIKLQAQRQLIE---PIPLNFEG 456

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKT---FTMAKVIEAMQR 194
           +  F  +  +  + DQ   I  +L    ++   +LL G  G GKT      + V+     
Sbjct: 457 VREFIAKAPFVHTPDQAKTINDILDDFKTKIMDRLLSGDVGFGKTEVAMVASFVVANSGY 516

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAV 222
              V+AP  IL  Q +  FK  F    +
Sbjct: 517 QVAVIAPTTILVNQHFESFKERFKDTDI 544


>gi|156373178|ref|XP_001629410.1| predicted protein [Nematostella vectensis]
 gi|156216410|gb|EDO37347.1| predicted protein [Nematostella vectensis]
          Length = 471

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 529 SATPGSWELEQCQGIIVEQI-----IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           SAT  +   E     +   +     IR +       E+     Q       +    Q+G 
Sbjct: 235 SATLSNGIEEWAGLHLDNHVRVTVGIRNSATATVDQELLFV-GQESGKLLAVRDIVQKGF 293

Query: 584 R--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
              +L+ V +K  A++L   L    I V  +HS+    +R  I++  R GK  VL+   L
Sbjct: 294 TPPVLIFVQSKDRAKELFHELIYDGINVDVIHSDRTQAQRDNIVKSFRTGKIWVLIATEL 353

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLA 700
           +  G+D     LV   D     F  S  + I  IGR  R   + K I +      +   +
Sbjct: 354 MGRGIDFKGVNLVINYD-----FPTSAVAYIHRIGRTGRAGRTGKAITFFTEEDTTSLRS 408

Query: 701 I 701
           I
Sbjct: 409 I 409


>gi|146076715|ref|XP_001462984.1| nucleolar RNA helicase II [Leishmania infantum JPCM5]
          Length = 629

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 90/251 (35%), Gaps = 23/251 (9%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG--LVDPPVEIRSARTQVE------D 570
                 T++ SAT   W          ++ I   G   V     I+  R +         
Sbjct: 270 ERPVHQTLLFSATVPEWVHTCSFIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEISSM 329

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D I + +    R L+   TK+   DL+  +    +  + +H +++  +R   ++  R 
Sbjct: 330 LADLIKVYSGAHGRTLVFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKSFRD 387

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            KF VL+  ++   GLD+P   LV       +       + I   GR  R     V +  
Sbjct: 388 NKFSVLIATDVAARGLDLPMVDLVIQCAPPSD-----IDAFIHRAGRTGRAGRKGVCVLL 442

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
               +  +  ++   R  +  ++ +    + P   +E+I++ +     ED A        
Sbjct: 443 YQPRE--EYVVERIERHAK--MKFD----VLPAPTREEILKAVARDAAEDLARVERRATD 494

Query: 751 QQLSLSKKKGK 761
             +  + +  K
Sbjct: 495 LFMDQAAELLK 505


>gi|119898413|ref|YP_933626.1| ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119670826|emb|CAL94739.1| ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 650

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 6/139 (4%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D    I  A ++    ++ V TK    +L + L  R      ++ ++    R  +I  L+
Sbjct: 233 DALTRILDAEEKLDAAIVFVRTKTATTELADKLEARGYAAAALNGDMTQGLRERVIEQLK 292

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G  D++V  ++   G+D+P    V   D           + +  IGR  R       IL
Sbjct: 293 NGSLDIVVATDVAARGIDVPRISHVINYD-----IPYDTEAYVHRIGRTGRAGREGSAIL 347

Query: 689 YADTITKSIQLAIDETTRR 707
           +       +  AI+  TR+
Sbjct: 348 FVAPRESRMLKAIERATRQ 366


>gi|81429227|ref|YP_396228.1| putative ATP-dependent RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610870|emb|CAI55922.1| Putative ATP-dependent RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 530

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 80/194 (41%), Gaps = 13/194 (6%)

Query: 522 RPTTIVVSAT-PGS-WELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEI 575
           +  T++ SAT P    ++ +      E I ++   L    ++   +R+   +  D+   +
Sbjct: 174 KRQTLLFSATLPAPIMKIGKSFMTNPEMIKVKSKELTADLIDQYYVRAKDFEKFDIMTRL 233

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               Q     L+   TKR  ++LT  L  R      +H ++   +R+ +++  + G+ DV
Sbjct: 234 FD-VQSPELTLIFGRTKRRVDELTRGLKARGYNAEGIHGDLSQQKRMSVLKSFKAGRLDV 292

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   S V + +     
Sbjct: 293 LVATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRTGRAGKSGVSVTFVTPNE 347

Query: 695 KSIQLAIDETTRRR 708
                 I+E T++R
Sbjct: 348 MEYLRIIEELTKKR 361


>gi|74191640|dbj|BAE30391.1| unnamed protein product [Mus musculus]
          Length = 622

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 87/238 (36%), Gaps = 23/238 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D     +  +             + + GF      D R + F  +   R  T++ SAT
Sbjct: 324 LMDSLQKKMVSLDICRYLALDEADRMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSAT 377

Query: 532 PGSWELEQCQGIIVEQIIRPTG-----LVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                    +  +V+ +    G      +D   E+   + + + VY  +    +    +L
Sbjct: 378 MPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVL 436

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +GL
Sbjct: 437 IFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGL 496

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           D P    V   D  +E       + +  IGR  R+ N+ +          I  A DE+
Sbjct: 497 DFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGIATTF------INKACDES 543


>gi|317140423|gb|ADV03672.1| vasa-like protein [Gadus morhua]
          Length = 354

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 10/122 (8%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
            V   S R Q+ D+            R ++ V TKR A+ +  +L + N+    +H + +
Sbjct: 243 QVTKFSKRDQLLDILKNTGT-----ERTMVFVETKRQADFIAAFLCQENVATTSIHGDRE 297

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + + D R GK  VLV  ++   GLDI +   V   D        +    +  IGR
Sbjct: 298 QREREQALGDFRSGKCPVLVATSVAARGLDIKDVQHVVNFD-----LPNNIDDYVHRIGR 352

Query: 678 AA 679
             
Sbjct: 353 TG 354


>gi|198424291|ref|XP_002131481.1| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box
           protein 3, X-chromosomal) (Helicase-like protein 2)
           (HLP2) (DEAD box, X isoform) [Ciona intestinalis]
          Length = 733

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 64/169 (37%), Gaps = 17/169 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII---------RPTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E++      +   I           T +    V +       + + D 
Sbjct: 451 QTLMFSAT-FPKEIQILARDFLNNYIFLAVGRVGSTSTNITQKVVWVDEEEKH-KFLLDL 508

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +N    + L  L+   TK+ A+ L E+LY R  +   +H +    ER E +   R G++ 
Sbjct: 509 VNATDSKSL-TLIFTETKKGADALDEFLYTRKYKSTSIHGDRTQREREEALLAFRTGEYP 567

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +LV   +   GLDIP    V   D             +  IGR  R  N
Sbjct: 568 ILVATAVAARGLDIPNVRHVINFD-----LPSDVDEYVHRIGRTGRVGN 611


>gi|21673432|ref|NP_661497.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
 gi|21646533|gb|AAM71839.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
          Length = 657

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 6/157 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           I++ V TK     L E L  R      ++ ++    R   I  L+ G  ++++  ++   
Sbjct: 269 IIIFVRTKTETVALAEKLQARGYAAAALNGDMVQSARERTIEQLKDGTLNIVIATDVAAR 328

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     + +  AI+ 
Sbjct: 329 GLDVERISHVINYD-----IPTDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLFAIER 383

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
            TR+R + +E      +N + + +    + D +  ED
Sbjct: 384 ATRKRIELMELPSTEIVNDKRIAKFKQRITDTVGAED 420


>gi|116196386|ref|XP_001224005.1| hypothetical protein CHGG_04791 [Chaetomium globosum CBS 148.51]
 gi|88180704|gb|EAQ88172.1| hypothetical protein CHGG_04791 [Chaetomium globosum CBS 148.51]
          Length = 649

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 6/138 (4%)

Query: 568 VEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + DV      A   G +  L+  +       LT+      +  R++  +  T +R E + 
Sbjct: 263 LNDVVVRAWFAKAAGRKSTLVFCVDLNHVSALTQRFRHYGVDARFVTGDTPTRDRAERLD 322

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             + G+F VLV   +  EG DIP    + +    +     S+  LIQ IGR  R  + K 
Sbjct: 323 AFKKGEFPVLVNCGVFTEGTDIPNIDCIVLARPTR-----SRNLLIQMIGRGMRLHSGKQ 377

Query: 687 ILYADTITKSIQLAIDET 704
             +   +   ++  I  T
Sbjct: 378 DCHIIDMVAGLETGIVTT 395



 Score = 40.8 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ------RPAIVMAPNKILA 206
           Q   I  +L+ I    K   +   TGSGKT    ++I  ++         +++A  + L 
Sbjct: 37  QEECIQSVLQSIEDGHKRLGVSLATGSGKTVIFTQLIGRVKPRSGKATQTLILAHRRELV 96

Query: 207 AQLYSEFKNFFPHNAVEY 224
            Q      N +P   +E 
Sbjct: 97  EQAARHCSNTYPDKTIEL 114


>gi|241148960|ref|XP_002405949.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215493782|gb|EEC03423.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 460

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 569 EDVYDEINLAA--QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           ED   +++     ++  + ++   TKR  +DLT  +         +H +    ER  ++ 
Sbjct: 297 EDKLMKLHQEILNEKENKTIVFAETKRKVDDLTRKMRRYGWPAICIHGDKTQQERDWVLN 356

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + R G+  +LV  ++   GLD+ +   V   D     +       I  IGR AR+  +  
Sbjct: 357 EFRSGRAPILVATDVAARGLDVDDVRFVINYD-----YPNCSEDYIHRIGRTARSNKTGT 411

Query: 687 ILYADTITKSIQ 698
                T   S Q
Sbjct: 412 AYTFFTPNNSRQ 423


>gi|311746403|ref|ZP_07720188.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
 gi|126575289|gb|EAZ79621.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
          Length = 399

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 77/212 (36%), Gaps = 24/212 (11%)

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT--PGSWELEQ 539
           Q+  +   +F R     + GF       N   +       R  T++ SAT  P    L Q
Sbjct: 197 QVKTLVLDEFDRM---LDMGFV------NDVKKLVGGMTQREQTMLFSATLEPNQKNLIQ 247

Query: 540 CQGIIVEQIIRPTGLVDPP------VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
                  ++   TG+          + +   + +   + D     A    ++++   TKR
Sbjct: 248 SLLKNPVEVKINTGVSTNENIEQGIIRVPEGKDKFGMLADLFQNRAMD--KVIVFTETKR 305

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
           +A+ L++ L +  ++   +H       R + I   + G+  VLV  ++   G+D+ +   
Sbjct: 306 LADRLSKKLNQAGVKSGLIHGNKSQNFRNKTIEQFKSGETRVLVATDVAARGIDVADVSH 365

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           V            +  S I  IGR  R   + 
Sbjct: 366 VINY-----QLPMTMDSYIHRIGRTGRAGKTG 392


>gi|94556865|gb|AAY89069.2| vasa-like protein [Litopenaeus vannamei]
          Length = 703

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 6/118 (5%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               +IL+ V  KR+A+ +  YL E+  R   MH +    +R + + + R G  ++LV  
Sbjct: 514 ADDEKILVFVEQKRVADFVGTYLCEKKFRATTMHGDRYQAQREQALSEFRTGVHNILVAT 573

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
            +   GLDI   G+V   D  K+         +  IGR  R  N    I + D  T +
Sbjct: 574 AVTARGLDIKGIGVVVNYDLPKD-----IDEYVHRIGRTGRLGNRGLSISFYDDETDA 626


>gi|90424330|ref|YP_532700.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
 gi|90106344|gb|ABD88381.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
          Length = 503

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 62/189 (32%), Gaps = 16/189 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---------EDVYDE 574
            T+  +AT    E+ +     +   ++          +   ++QV          +    
Sbjct: 186 QTLFFTAT-MPNEIRRITETFLHNPVKIEVSKPASTAVTVTQSQVATGREPHEKRETLRR 244

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +   A+     ++    KR    L + L +    V  +H +++   R   +   R G+  
Sbjct: 245 LLRDAKDLQNAIIFCNRKREVALLAKSLEKHGFSVGALHGDMEQSARTAALDQFRKGELP 304

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           +LV  ++   GLDIPE   V   D             +  IGR  R   +   I      
Sbjct: 305 ILVASDVAARGLDIPEVSHVINFDV-----PHHPDDYVHRIGRTGRAGRAGTAISIVCPS 359

Query: 694 TKSIQLAID 702
                 AI+
Sbjct: 360 DTKSIAAIE 368


>gi|90409933|ref|ZP_01217950.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90329286|gb|EAS45543.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 462

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 108/320 (33%), Gaps = 61/320 (19%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L + I  +++         + ++  +   +  R  +L   GF   L + +D  P  
Sbjct: 178 TPGRLLDLISSNAI--------KLDRVKTLVLDEADRMLSL---GFTDELSALLDLLP-- 224

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYD 573
                     T++ SAT              EQ+      L++ PVEI   + Q  D   
Sbjct: 225 ------KNKQTLLFSAT------------FPEQVQALTQELLNDPVEI---QLQSADAST 263

Query: 574 EIN--LAAQQGLRI---------------LLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
            +       +G +                L+ V  K   E L + L +R I     H + 
Sbjct: 264 LVQRVFTVNKGEKTALLAHLIKQHEWRQALIFVNAKNSCEHLADKLSKRGITAEVFHGDK 323

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
               R  ++   + G+ +VL+  ++   GLDI +  +V   D       RS +  +  IG
Sbjct: 324 GQGARTRVLEAFKSGEIEVLIATDIAARGLDIEKLPVVINFD-----LPRSPSDYMHRIG 378

Query: 677 RAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           R+ R     + L            + E  ++ + +LE  +        V E  +    P+
Sbjct: 379 RSGRAGEVGLALSLIDHDDYHHFKVIE--KKNKIRLEREQVEGFEADEVNEAFLIANKPM 436

Query: 737 LLEDAATTNISIDAQQLSLS 756
              + +      +   L+  
Sbjct: 437 AKPEGSGKKKRKNKASLNED 456


>gi|58263430|ref|XP_569125.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108386|ref|XP_777144.1| hypothetical protein CNBB3750 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687070|sp|Q5KME7|PRP5_CRYNE RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|50259829|gb|EAL22497.1| hypothetical protein CNBB3750 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223775|gb|AAW41818.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1072

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 10/147 (6%)

Query: 555 VDPPVEIRSARTQVEDVYDEI-----NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           +D  VE+R   T+   + + +         +   R L+ V  +  A+DL   L +R    
Sbjct: 624 IDQRVEVRDGDTKFTRLLEILGEMGEEHKDEDDFRTLIFVDRQESADDLFRELLQRGYVC 683

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H   + ++R E I++ + G   ++V  ++   GLD+ E  LV   DA          
Sbjct: 684 ASLHGGKEQVDRDEAIKNFKNGDVPIIVATSVAARGLDVKELKLVINYDA-----PNHME 738

Query: 670 SLIQTIGRAARNVNSKVILYADTITKS 696
             +   GR  R  N    +   T  + 
Sbjct: 739 DYVHRAGRTGRAGNKGTCITFITPEQE 765


>gi|323352691|ref|ZP_08087661.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
 gi|322121727|gb|EFX93473.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
          Length = 523

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 96/262 (36%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVD-QYYIRVKENEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++    +  D  +  +        
Sbjct: 349 GYLQIIENLTKKRMKGLKPATAEEAFQAKKKVALKKIER---DFADESIRSNFEKFGRDA 405

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
                  S ++   ++ SL  Q
Sbjct: 406 RKLVAEFSPEELAMYILSLTVQ 427


>gi|319787505|ref|YP_004146980.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466017|gb|ADV27749.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 616

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 9/163 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L   L  R +    ++ +++  +R   I+ L+ G+ DVLV  ++   
Sbjct: 254 MIVFARTKAATEELANKLQARGVAAAAINGDMQQQQRERTIQQLKDGRLDVLVATDVAAR 313

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     K +  AI+ 
Sbjct: 314 GLDVERISHVLNYD-----IPYDTESYVHRIGRTGRAGRSGEAILFVTPREKGMLRAIER 368

Query: 704 TTRRREKQLEHNKKHNINPQSVKE---KIMEVIDPILLEDAAT 743
            TR+  +++       +N + V     +I   ++   L++   
Sbjct: 369 ATRQPIEEMRLPTVQAVNDRRVARFFERIEGTLEAGGLDEYRE 411


>gi|315223209|ref|ZP_07865070.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
 gi|315187641|gb|EFU21395.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
          Length = 539

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 17/218 (7%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    +  D    +    +Q    ++   TKR  ++LT  L  R  R   +H ++   +
Sbjct: 240 IRVKENEKFDTMTRLMD-VEQPELSIVFGRTKRRVDELTRGLKIRGFRTEGIHGDLDQGK 298

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ ++RD + G  D+LV  ++   GLDI     V   D       +   S +  IGR  R
Sbjct: 299 RLRVLRDFKNGNLDILVATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGR 353

Query: 681 NVNSK-VILYADTITKSIQLAIDETTRRREKQL-------EHNKKHNINPQSVKEKIMEV 732
              S   I +           I+  T++R K +           K  +  + ++    + 
Sbjct: 354 AGKSGQSITFVAPNEMGYLQVIESLTKKRMKGMKPATAEEAFQAKKKVALKKIERDFADE 413

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQ 770
                 E        + A+    + ++   ++ +L  Q
Sbjct: 414 SIRNQFEKFGKDARKLAAEF---TPEELALYILTLTVQ 448


>gi|288959329|ref|YP_003449670.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510]
 gi|288911637|dbj|BAI73126.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510]
          Length = 512

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 88/266 (33%), Gaps = 46/266 (17%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         + ++HV +  I      +  R     + GF      D R +   
Sbjct: 139 TPGRLLD--------LMAQNHVNLGAIEVFVLDEADRM---LDMGFI----RDVRKVVAV 183

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
                   T++ SAT     ++    I+ +            +E+    T VE +   + 
Sbjct: 184 LPKER--QTLLFSATMPDAVVDLANSILTDA---------ERIEVTPQSTTVERINQRVL 232

Query: 577 LAAQQGLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
              +   R               ++   TK  A+ + ++L +  I    +H +     R+
Sbjct: 233 FVERGDKRRLLADLLEDEAMARTIVFARTKHGADRIADHLKKAGITADAIHGDKSQSARV 292

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             +   R G+   LV  ++   G+DI     V   D   E       S +  IGR AR  
Sbjct: 293 RALESFRNGELRALVATDIAARGIDIDGISHVINFDLPNE-----PESYVHRIGRTARAG 347

Query: 683 -NSKVILYADTITKSIQLAIDETTRR 707
            +   + + D         I++T R+
Sbjct: 348 TDGSAVSFCDHEEVGYLKDIEKTIRQ 373


>gi|118469425|ref|YP_886296.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
 gi|118170712|gb|ABK71608.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
          Length = 502

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 7/134 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   I  A  +G   ++   TKR A+ +++ L ER  +V  +H ++    R + ++  R
Sbjct: 246 ELVSRILQARGRG-ATMVFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAREKALKSFR 304

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G+ DVLV  ++   G+DI +   V             + + +  IGR  R   + V I 
Sbjct: 305 TGEIDVLVATDVAARGIDIDDVTHVINY-----QCPEDEQAYVHRIGRTGRAGKTGVAIT 359

Query: 689 YADTITKSIQLAID 702
             D    +    ID
Sbjct: 360 LVDWDELARWEMID 373


>gi|115456051|ref|NP_001051626.1| Os03g0805200 [Oryza sativa Japonica Group]
 gi|75326432|sp|Q75HJ0|RH37_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 37; AltName:
           Full=OsPL10a
 gi|41469394|gb|AAS07217.1| putative helicase [Oryza sativa Japonica Group]
 gi|108711635|gb|ABF99430.1| ATP-dependent RNA helicase An3, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113550097|dbj|BAF13540.1| Os03g0805200 [Oryza sativa Japonica Group]
 gi|222626000|gb|EEE60132.1| hypothetical protein OsJ_13017 [Oryza sativa Japonica Group]
          Length = 637

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 62/177 (35%), Gaps = 19/177 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYD 573
              T++ SAT    E+++     +   I          T L+   VE      +   + D
Sbjct: 361 VRQTMLFSAT-FPKEIQRMASDFLADYIFLAVGRVGSSTDLIAQRVEFVLEADKRSYLMD 419

Query: 574 EINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            ++     G        L+ V TKR A+ L  +LY        +H +    ER   +R  
Sbjct: 420 LLHAQKANGTHGKQALTLVFVETKRGADALENWLYTNGFPATSIHGDRTQQEREYALRSF 479

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           + G   +LV  ++   GLDIP    V   D             +  IGR  R   S 
Sbjct: 480 KSGATPILVATDVAARGLDIPHVAHVINFD-----LPNDIDDYVHRIGRTGRAGKSG 531


>gi|29840634|ref|NP_829740.1| transcription-repair coupling factor [Chlamydophila caviae GPIC]
 gi|29834984|gb|AAP05618.1| transcription-repair coupling factor [Chlamydophila caviae GPIC]
          Length = 1085

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 80/224 (35%), Gaps = 15/224 (6%)

Query: 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219
           +L  I +     L+  +    + F  AK         +++   +     L+ +  +F   
Sbjct: 14  ILSEITNASIPLLIENIRPGARGFLAAKFFRERDESVVMIT-TRARIDDLFEDLSSFLGC 72

Query: 220 NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS 279
             VE+  S  D       +   D   +++  + E  ++          +     + +  +
Sbjct: 73  APVEFPSSEIDLSPKLVNI---DAVGKRDKVLYELYEK----------KAPLFCITTLKA 119

Query: 280 CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
            +    S +      + L++GD ++ + ++       Y+ + +   +G F   G  I+IF
Sbjct: 120 LLEKTRSPKDTGHQHLDLQVGDVLDPEMMIDLCKNLGYRHETLASDKGEFAYRGGIIDIF 179

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
           P   ++  +R+  +G  I  I  F P        V  I I   +
Sbjct: 180 PLSSQE-PFRIEFWGEKIISIRPFNPSDQLSTGKVSKISISPAT 222



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H ++   E   I +  +  + ++LV   L+  G+DIP    + +  ADK G       L 
Sbjct: 801 HGQMSPDELASIFQKFKDQEINILVATALIENGIDIPNANTILVDQADKFG----MADLY 856

Query: 673 QTIGRAARNVNSKVILYADTITKSI 697
           Q  GR  R        +  +    +
Sbjct: 857 QMKGRVGRWNRKAYCYFLVSHLDRL 881



 Score = 45.9 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 15/132 (11%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           +++R++SE+++    + L +L    + +           S+    H +++  F     Y 
Sbjct: 509 RRSRDLSEKSLVLYAEKLLQLEAQRSTIP----------SFIYPPHGEEVIKFAENFPYE 558

Query: 149 PSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ  AI Q+    +  +   +L+ G  G GKT   M   ++A+    R  IVM P  
Sbjct: 559 ETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAVCDGHRQVIVMVPTT 618

Query: 204 ILAAQLYSEFKN 215
           ILA Q Y  F  
Sbjct: 619 ILANQHYETFSQ 630


>gi|94311518|ref|YP_584728.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans
           CH34]
 gi|93355370|gb|ABF09459.1| RNA helicase [Cupriavidus metallidurans CH34]
          Length = 556

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 90/262 (34%), Gaps = 33/262 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         V +  V + Q+  +   +  R     + GF LP       L   
Sbjct: 206 TPGRLLD--------HVQQKSVNLSQVQMLVLDEADRM---LDMGF-LPDLQRIINLLPA 253

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVED----- 570
           +       T++ SAT      +     + + +       +   E +R    QV+D     
Sbjct: 254 Q-----RQTLLFSATFSPEIKKLASSYLKQPVTIEVARSNSTNENVRQVVYQVQDGHKQA 308

Query: 571 -VYDEINLAA--QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            V   +   A  QQ  + ++ V +K     L  +L    I    +H +    ER++ +  
Sbjct: 309 AVVHLLKQRANEQQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDG 368

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-- 685
            + G  D LV  ++   GLDIP    V   D        S    +  IGR  R   S   
Sbjct: 369 FKNGTIDALVATDVAARGLDIPAMPCVINFD-----LPFSAEDYVHRIGRTGRAGASGDA 423

Query: 686 VILYADTITKSIQLAIDETTRR 707
           + ++       +   I++  +R
Sbjct: 424 LSIFVPGNDDRLLADIEKLIKR 445


>gi|227548399|ref|ZP_03978448.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079443|gb|EEI17406.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 683

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 68/185 (36%), Gaps = 22/185 (11%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++ V TK   E+L E L  R      ++ ++   +R   +  LR G+ D+LV  ++ 
Sbjct: 344 EAMIVFVRTKHETEELAEKLRARGFSAAAINGDIAQQQRERTVDQLRDGRLDILVATDVA 403

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           S +  IGR  R   +   IL+     + +  +I
Sbjct: 404 ARGLDVERISHVFNYD-----IPNDIESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSI 458

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761
           +                 +   +++E  +  +D +          SI A   S  +   K
Sbjct: 459 ER----------------VTNATIEEMELPTVDEVNESRKLKFMDSITASLESKDQDVFK 502

Query: 762 AHLKS 766
           A ++ 
Sbjct: 503 AMVRE 507


>gi|242814538|ref|XP_002486388.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218714727|gb|EED14150.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 502

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 84/257 (32%), Gaps = 35/257 (13%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 213 SFHPKDRQVMLFSATFPMIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVH- 271

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 272 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNR 323

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 324 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 378

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743
             + +          L   E     E Q          PQS+ +K+     P  +     
Sbjct: 379 LGLAINLINWDDRFNLYKIEQELGTEIQ--------PIPQSIDKKLYVYDSPDTIPRPIA 430

Query: 744 TNISIDAQQLSLSKKKG 760
           +      +    S+K+G
Sbjct: 431 SGPQPGTEGQQRSEKQG 447


>gi|71749190|ref|XP_827934.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70833318|gb|EAN78822.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 660

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 68/193 (35%), Gaps = 15/193 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVEDVYDEINLA 578
            T++ SAT         +  +        G V    E     +R      +       L 
Sbjct: 349 QTLLYSATFPVEIQRLAREFMCRHSFLQVGRVGSTTENITQDVRWIEDPDKRQALLTLLR 408

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             +G  +L+ V  KR A+ L  +L    +    +H +    ER E +R  + G   VLV 
Sbjct: 409 ENEGKLVLVFVEKKRDADYLERFLRNSELACVSIHGDRVQREREEALRLFKSGACQVLVA 468

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD-----TI 693
            ++   GLDIP  G+V   D        +    +  IGR  R     V +         I
Sbjct: 469 TDVASRGLDIPNVGVVIQYD-----MPSNIDDYVHRIGRTGRAGKVGVAISFFNEKNRNI 523

Query: 694 TKSIQLAIDETTR 706
              +   ++ET +
Sbjct: 524 VDDLIPLLNETNQ 536


>gi|295097891|emb|CBK86981.1| Superfamily II DNA and RNA helicases [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 442

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 68/180 (37%), Gaps = 21/180 (11%)

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           +    L    + VSATP + E ++          R   L            +VE +   +
Sbjct: 198 DFAERLLEDPVEVSATPSTRERKKIHQW----YYRADNL----------EHKVELLKHLL 243

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               ++  R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +V
Sbjct: 244 KQ--EEATRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMAQVKRTEGIKRLTDGRVNV 301

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+DIP+   V   D  + G      + +  IGR  R     + +       
Sbjct: 302 LVATDVAARGIDIPDVSHVINFDMPRSG-----DTYLHRIGRTGRAGRKGIAISLVEAHD 356


>gi|256985213|ref|NP_084372.2| probable ATP-dependent RNA helicase DDX52 [Mus musculus]
 gi|56206921|emb|CAI25508.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Mus musculus]
 gi|74225794|dbj|BAE21716.1| unnamed protein product [Mus musculus]
 gi|148683781|gb|EDL15728.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Mus musculus]
          Length = 598

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G +  +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 404 MRELVKKGFKPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 463

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K + +  
Sbjct: 464 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNRGKAVTFFT 518

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 519 EDDKPLLRSV 528


>gi|5059027|gb|AAD38874.1|AF110007_1 p68 RNA helicase [Molgula oculata]
 gi|5059032|gb|AAD38877.1|AF110009_1 p68 RNA helicase [Molgula oculata]
          Length = 618

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 12/144 (8%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +   + ++   TKR  ++LT  +         +H +    ER  ++ + R G+  +LV  
Sbjct: 392 ESENKTIIFTETKRRCDELTRTMRRDGWPAMCIHGDKSQPERDWVLNEFRSGRSPILVAT 451

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   GLD+ +   V   D     F       +  IGR AR        Y      + + 
Sbjct: 452 DVASRGLDVSDVKFVINYD-----FPSQCEDYVHRIGRTARAEQKGTA-YTFFTYDNAKQ 505

Query: 700 AIDETTRRREKQLEHNKKHNINPQ 723
           A D         +    K  +NP+
Sbjct: 506 AKD------LIAILQEAKQAVNPK 523


>gi|7023040|dbj|BAA91812.1| unnamed protein product [Homo sapiens]
          Length = 491

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 295 VRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 354

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K I +  
Sbjct: 355 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITFFT 409

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 410 EDDKPLLRSV 419


>gi|256379849|ref|YP_003103509.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
 gi|255924152|gb|ACU39663.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
          Length = 501

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 83/257 (32%), Gaps = 28/257 (10%)

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
           D        +S +          +A+ GF +P       L  E         ++ SAT  
Sbjct: 188 DHVRQGTADLSEVMFTALDEADQMADMGF-MPQVRAILDLTPEN-----GQRLLFSATLD 241

Query: 534 SWELEQC----QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
               +         +V  +  PTG V    E        ED    +   A +  R ++ V
Sbjct: 242 GDVDKLVRQYLHDPVVHSVAPPTGSVTTM-EHHLLFVSAEDKQSVVTEVAAREGRTIMFV 300

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            TK   + L + L    +    +H       R  ++   R G   VL+  ++   G+ + 
Sbjct: 301 RTKHHVDRLAKKLRSMGVHAGALHGGKAQSARTRVLGQFREGTTPVLIATDVAARGIHVD 360

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           +  LV  +D   +         +   GR AR   S  ++   T  +           RR 
Sbjct: 361 DVSLVVHVDPPAD-----PKDYLHRAGRTARAGQSGTVVTLVTHDQ-----------RRA 404

Query: 710 KQLEHNKKHNINPQSVK 726
            Q     +  I P+S K
Sbjct: 405 VQGL-TSRAGIRPESTK 420


>gi|210623578|ref|ZP_03293904.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
 gi|210153448|gb|EEA84454.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
          Length = 538

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 103/283 (36%), Gaps = 44/283 (15%)

Query: 496 TLAEYGFR--LPSCMDNRPLRFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQI--- 548
            + + GFR  + + ++N P            T   SAT      EL +      E I   
Sbjct: 158 EMLDMGFREDIETILENVPEE--------RQTTFFSATMPKAILELTKKYQNEPEHIKVV 209

Query: 549 ---IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
              +    +    +E R A  ++E +   I++   +    ++   TK+ A++L   L  R
Sbjct: 210 RKELTVENIKQYYIETR-ASNKIEVLSRLIDVYNPK--LSVVFCNTKKGADELVGELQGR 266

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
                 +H ++K ++R  ++   R G  D+LV  ++   G+D+ +   V   D       
Sbjct: 267 GYFADALHGDLKQVQRDIVMDKFRNGTIDILVATDVAARGIDVDDVECVFNFD-----LP 321

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
           + +   +  IGR  R      + ++    + ++  + +  R  + +LE   KH       
Sbjct: 322 QDEEYYVHRIGRTGRAGREG-LSFSFVYGRDMRK-MKDIERYTKSKLE---KH------- 369

Query: 726 KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
                  I  +   +        +  +   ++ K    ++ L 
Sbjct: 370 ------PIPTVGDVEEKKVGAFFEEVKRVANEGKLSKQIQWLE 406


>gi|157960731|ref|YP_001500765.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157845731|gb|ABV86230.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 429

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 95/263 (36%), Gaps = 28/263 (10%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         + E  +++  +  +   +  R   L E GF  P        R  
Sbjct: 140 TPGRLLD--------LLREQQLSLESVKQLVLDEADR---LMEMGF-WPDLE-----RIL 182

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVE--DVYD 573
           E+   +  T++ SAT      E+  G++   + +          +I  +   V   D   
Sbjct: 183 EFIPSKRQTMLFSATLAPELNEKALGLLRAPVKVEAHAANSVVTDISESLYLVNKGDKAR 242

Query: 574 EINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +    Q+    ++L+ +  K  A+ L + L +  I    +H + + L+R + + D +  
Sbjct: 243 ALIALIQKNQWSQVLVFINAKDDADKLAKRLVKAGINAAALHGDKEQLDRQQTLADFKAL 302

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYA 690
           K  VLV  +LL  G+ +    +V  LD        S    +  IGR AR  +    I   
Sbjct: 303 KLPVLVTTDLLSRGIHVDALPVVINLD-----LPNSAPVYVHRIGRTARAGDKGLAISLV 357

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
                    AI + T R  K   
Sbjct: 358 CHGEADSLKAIQQLTERELKLEA 380


>gi|325188273|emb|CCA22813.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 465

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 26/198 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQVEDVYDE 574
              + SAT    E+ +     +   IR           G+    V I     + + + D 
Sbjct: 267 QVALFSAT-MPQEVLEVTQKFMRDPIRIMVKRDELTLEGIKQFFVAIEREEWKFDTLCDL 325

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                    + ++   T+R  + LTE +  ++  V  MH ++   +R  I+R+ R G   
Sbjct: 326 YETLTIT--QAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSR 383

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-------- 686
           VL+  +LL  G+D+ +  LV   D        ++ + I  IGR+ R     V        
Sbjct: 384 VLITTDLLARGIDVQQVSLVVNYD-----LPLNRENYIHRIGRSGRFGRKGVAINFLTEC 438

Query: 687 -ILYADTITKSIQLAIDE 703
            + Y   I K     I+E
Sbjct: 439 DVRYLKDIEKFYNTQIEE 456


>gi|325188272|emb|CCA22812.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 470

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 26/198 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQVEDVYDE 574
              + SAT    E+ +     +   IR           G+    V I     + + + D 
Sbjct: 272 QVALFSAT-MPQEVLEVTQKFMRDPIRIMVKRDELTLEGIKQFFVAIEREEWKFDTLCDL 330

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                    + ++   T+R  + LTE +  ++  V  MH ++   +R  I+R+ R G   
Sbjct: 331 YETLTIT--QAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSR 388

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-------- 686
           VL+  +LL  G+D+ +  LV   D        ++ + I  IGR+ R     V        
Sbjct: 389 VLITTDLLARGIDVQQVSLVVNYD-----LPLNRENYIHRIGRSGRFGRKGVAINFLTEC 443

Query: 687 -ILYADTITKSIQLAIDE 703
            + Y   I K     I+E
Sbjct: 444 DVRYLKDIEKFYNTQIEE 461


>gi|310799184|gb|EFQ34077.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 603

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 9/151 (5%)

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLA----AQQGLRILLTVLTKRMAEDLTEYLYE 604
           ++    +   VE+   R + + +   +       +Q+  RIL+  L K+ A  +  +L +
Sbjct: 402 LQANTRITQRVEVVDPRAKEQRLLQLLKQWQATASQKNDRILVFCLYKKEATRVEAFLQQ 461

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           R IRV  +H +++  +R   +   + G   VLV  ++   GLDIPE  LV  +      F
Sbjct: 462 RGIRVGGIHGDLRQEQRTRSLEAFKAGTTPVLVATDVAARGLDIPEVKLVINV-----TF 516

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             +    +  IGR  R   +   +   T   
Sbjct: 517 PLTIEDYVHRIGRTGRAGKTGEAITLFTEHD 547


>gi|226315226|ref|YP_002775122.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226098176|dbj|BAH46618.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 513

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 17/194 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE--------QIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      E  Q  + E        + +    +    +E+  A  Q  DV   +
Sbjct: 177 QTLLFSATMPRAIQEIAQQFMNEPTIIQVKAKEVTVPNIAQEYMEV--AEKQKFDVLCRL 234

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                     ++   TKR  ++L+E L +R      +H ++   +R  ++R  + G  +V
Sbjct: 235 LD-IHSPELAIIFGRTKRRVDELSEALTKRGYGAEGIHGDLNQAKRDSVLRKFKEGTIEV 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   +   I +  +  
Sbjct: 294 LVATDVAARGLDISGVTHVFNFD-----IPQDSESYVHRIGRTGRAGKTGLAITFVTSRE 348

Query: 695 KSIQLAIDETTRRR 708
                 I+ TT RR
Sbjct: 349 IDHLRLIERTTNRR 362


>gi|242016149|ref|XP_002428698.1| predicted protein [Pediculus humanus corporis]
 gi|212513369|gb|EEB15960.1| predicted protein [Pediculus humanus corporis]
          Length = 513

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 74/213 (34%), Gaps = 21/213 (9%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
                 + + GF      D R + F  +   R  T++ SAT         +  +V+ I  
Sbjct: 234 MDEADRMIDMGFE----EDVRTI-FSFFKGQR-QTLLFSATMPKKIQNFARSALVKPITI 287

Query: 551 PTGL-------VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
             G        V   VE      +V  + + +   A     +L+    K+  + + EYL 
Sbjct: 288 NVGRAGAASMNVIQEVEYVKQEAKVVYLLECLQKTAPP---VLIFAEKKQDVDAIHEYLL 344

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            + +    +H      ER   +   R GK DVLV  ++  +GLD P+   V   D     
Sbjct: 345 LKGVEAVAIHGGKDQEERSRSVEAFRSGKKDVLVATDVASKGLDFPDVQHVINYD----- 399

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
                 + +  IGR  R+  + +          
Sbjct: 400 MPDDVENYVHRIGRTGRSEKTGIATTFVNKAND 432


>gi|113868657|ref|YP_727146.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
 gi|113527433|emb|CAJ93778.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
          Length = 646

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR A+ L E L +       +H ++    R   +  LR G   VLV  ++  
Sbjct: 321 QAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNLRVLVATDVAA 380

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAID 702
            G+D+P+   V   D  K+         +  IGR  R   S   +         Q   I+
Sbjct: 381 RGIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGTAINLVNHNDMFQWKRIE 435

Query: 703 E-TTRR 707
             T +R
Sbjct: 436 RFTNQR 441


>gi|18410973|ref|NP_567067.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana]
 gi|42572719|ref|NP_974455.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana]
 gi|79315530|ref|NP_001030884.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana]
 gi|75329861|sp|Q8LA13|RH11_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 11
 gi|21593670|gb|AAM65637.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|332646270|gb|AEE79791.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
 gi|332646271|gb|AEE79792.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
 gi|332646272|gb|AEE79793.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
          Length = 612

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 68/193 (35%), Gaps = 16/193 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEIRSARTQVEDVYDE 574
              T++ SAT  S         +         ++   T L+   VE      +   + D 
Sbjct: 338 VRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDL 397

Query: 575 INLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           ++   +   +    L+ V TKR A+ L  +L         +H +    ER   +R  + G
Sbjct: 398 LHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTG 457

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YA 690
           +  +LV  ++   GLDIP    V   D             +  IGR  R   S +   + 
Sbjct: 458 RTPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKSGIATAFF 512

Query: 691 DTITKSIQLAIDE 703
           +     +  ++ E
Sbjct: 513 NENNAQLARSLAE 525


>gi|317401375|gb|EFV82010.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 591

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 57/143 (39%), Gaps = 15/143 (10%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR A+DL ++L ++      +H ++   +R   +  L+ G+  +LV  ++  
Sbjct: 247 QAIVFTSTKRGADDLADHLADQGFAAAALHGDMNQRQRTRTLSQLQRGQLRILVATDVAA 306

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            G+D+         D             +  IGR  R   + +     T           
Sbjct: 307 RGIDVQGISHAVNFD-----LPMQAEDYVHRIGRTGRAGRNGLAFTLAT----------H 351

Query: 704 TTRRREKQLEHNKKHNINPQSVK 726
           + R + +++EH    +I P+ + 
Sbjct: 352 SERHKVRRIEHYIGQSITPEVIA 374


>gi|284044842|ref|YP_003395182.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283949063|gb|ADB51807.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 590

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 15/194 (7%)

Query: 524 TTIVVSAT--PGSWELEQCQ--GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
            T++ SAT  P    + +      +  +I R T   D P+ +R +   V   +    L  
Sbjct: 193 QTVLFSATMPPRIDRIARAHLSDPVRIEIARETSAGDTPL-VRQSAYVVARAHKPAALGR 251

Query: 579 ---AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +     ++   T+   + LTE L  R  R   +H  +   +R  ++  LR G  D+
Sbjct: 252 VLDVESPTAAIVFCRTRDEVDQLTETLNGRGYRAEALHGGMTQEQRDRVMARLRNGTADL 311

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLD+ +   V   D        S  S +  IGR  R       I  A+   
Sbjct: 312 LVATDVAARGLDVEQLTHVVNYDV-----PSSPESYVHRIGRVGRAGREGAAITLAEPRE 366

Query: 695 KSIQLAIDETTRRR 708
                 I+  T++R
Sbjct: 367 HRYLKTIERVTKQR 380


>gi|281344701|gb|EFB20285.1| hypothetical protein PANDA_020280 [Ailuropoda melanoleuca]
          Length = 645

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 14/170 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP--------VEIRSARTQVEDVYDEI 575
            T+++SAT      +  Q  + E +I   G +D          V I +   +   + + +
Sbjct: 421 QTVMISATWSDTIHQLGQSYLKEPMIVYVGTLDLVAVNTVTQNVIITTQEEKRSLLQEFL 480

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              + Q  ++++ V  + +A+DL+  L  + I V+ +H +    +R   + D R GK  V
Sbjct: 481 QNRSPQD-KVIVFVRRRLVADDLSSDLSIQGITVQSLHGDRDQHDRERALEDFRSGKVKV 539

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           L+  +L   GLD+ +   V   D     F R+    +  +GR  R   + 
Sbjct: 540 LIATDLASRGLDVNDITHVYNYD-----FPRNIEEYVHRVGRTGRAGKTG 584


>gi|256785357|ref|ZP_05523788.1| helicase [Streptomyces lividans TK24]
          Length = 513

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 66/188 (35%), Gaps = 24/188 (12%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
                   +SAT    E         + I R   +  P             +   I  A 
Sbjct: 242 RYMSQPTHISATSPDDEGA-TVANTKQFIYRAHNMDKPE------------MVARILQAD 288

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +GL  ++   TKR A DL + L +R      +H ++    R + +R  R GK DVLV  
Sbjct: 289 GRGL-AMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCT 347

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS-- 696
           ++   G+D+     V    + +E     + + +  IGR  R       I   D       
Sbjct: 348 DVAARGIDVEGVTHVINYQSPEE-----EKTYLHRIGRTGRAGAKGTAITLVDWDDIPRW 402

Query: 697 --IQLAID 702
             I  A+D
Sbjct: 403 QLINKALD 410


>gi|157960395|ref|YP_001500429.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157845395|gb|ABV85894.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 623

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 66/194 (34%), Gaps = 12/194 (6%)

Query: 521 LRPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
                 + SAT          +     V   I  T      +E R  +    +  + +  
Sbjct: 179 KTRQLALFSATMPEQIKRVANKYLDNPVHVKIAATTSTVETIEQRFVQVSQHNKLEALVR 238

Query: 578 A--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               ++   I++ V T+    +L E L  R      +H ++    R   I  L+ G+ D+
Sbjct: 239 VLEVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIEQLKRGQLDI 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           ++  ++   GLD+   G V   D           + +  IGR  R   +   IL+     
Sbjct: 299 IIATDVAARGLDVERIGHVVNYD-----IPYDTEAYVHRIGRTGRAGRTGMAILFVTHRE 353

Query: 695 KSIQLAIDE-TTRR 707
             +   I+  T  R
Sbjct: 354 MRMLRTIERATNSR 367


>gi|308803500|ref|XP_003079063.1| putative DEAD-box RNA helicase DEAD3 (ISS) [Ostreococcus tauri]
 gi|116057517|emb|CAL51944.1| putative DEAD-box RNA helicase DEAD3 (ISS) [Ostreococcus tauri]
          Length = 492

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 15/188 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVE-IRSARTQVEDVYDE 574
            T++ SAT    E+++     ++  I            L+   VE + S   + E + D 
Sbjct: 186 QTMLFSAT-FPREIQRMAADFLDDYIFLTVGRVGSSHALITQSVERVNSYHEKSEMLLDL 244

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +          L+ V TKR A+ L ++L+        +H +    ER   ++  R GK  
Sbjct: 245 VEAVPGL---TLVFVETKRGADQLEDFLFTNGKPATSIHGDRTQQEREAALKSFRSGKTP 301

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   GLDIP    V   D   +  +   T  I   GRA +   +  +       
Sbjct: 302 ILVATDVAARGLDIPHVTHVINFDLPSD--IDDYTHRIGRTGRAGKKGRATALFLESKDG 359

Query: 695 KSIQLAID 702
           +  +  +D
Sbjct: 360 QIARSLVD 367


>gi|281422527|ref|ZP_06253526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
 gi|281403351|gb|EFB34031.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
          Length = 568

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 14/186 (7%)

Query: 524 TTIVVSAT--PGSWELEQC----QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
            TI+ SAT      EL +        I   + +P   +     +    TQ   +  +I  
Sbjct: 183 QTIMFSATMPEKIEELAKTLLKNPVEIKLAVSKPAEKIKQEAYV-CYETQKMTIIKDIFK 241

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A     R+++   +K   + L   L +  +    MHS+++  ER +++   + G++DVLV
Sbjct: 242 AGDLK-RVIVFSGSKFKVKQLAASLQQIGVNCGAMHSDLEQAERDDVMFKFKSGQYDVLV 300

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
             +++  G+DI +  +V   D             +  IGR AR N + + I +     + 
Sbjct: 301 ATDIVARGIDIDDIEMVINYDV-----PHDTEDYVHRIGRTARANRDGRAITFVSEEDQY 355

Query: 697 IQLAID 702
               I+
Sbjct: 356 WFQQIE 361


>gi|225682788|gb|EEH21072.1| pre-mRNA-processing ATP-dependent RNA helicase prp5
           [Paracoccidioides brasiliensis Pb03]
          Length = 1203

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 88/252 (34%), Gaps = 28/252 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     VE ++    +V P +    E+R+  T+   +   + 
Sbjct: 761 QTVLFSATFPRNMEALARKTLTKPVEIVVGGRSVVAPEITQIVEVRNEDTKFVRLLALLG 820

Query: 577 LAAQQGL----RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 821 DLYADDNNEDARTLIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIADFKAGV 880

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F +L+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 881 FPILIATSVAARGLDVKQLKLVINYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 933

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K      P++V++ +   I+ +       +      
Sbjct: 934 --------LTEVQERYSVDISKALKQSGQPVPEAVQKMVNSFIEKVKAGKEKASGSGFGG 985

Query: 751 QQLSLSKKKGKA 762
           + L    ++  A
Sbjct: 986 KGLERLDQERDA 997


>gi|148701846|gb|EDL33793.1| mCG19408 [Mus musculus]
          Length = 615

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 12/144 (8%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++  + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  
Sbjct: 339 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLSEFKHGKASILIAT 398

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   GLD+ +   V   D     +  S    I  IGR AR+  +    Y      +I+ 
Sbjct: 399 DVASRGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKTGTA-YTFFTPNNIKQ 452

Query: 700 AIDETTRRREKQLEHNKKHNINPQ 723
           A D         +       INP+
Sbjct: 453 ASD------LISVLREANQAINPK 470


>gi|329943213|ref|ZP_08291987.1| transcription-repair coupling factor [Chlamydophila psittaci Cal10]
 gi|332287793|ref|YP_004422694.1| transcription-repair coupling factor [Chlamydophila psittaci 6BC]
 gi|325507232|gb|ADZ18870.1| transcription-repair coupling factor [Chlamydophila psittaci 6BC]
 gi|328814760|gb|EGF84750.1| transcription-repair coupling factor [Chlamydophila psittaci Cal10]
 gi|328915051|gb|AEB55884.1| transcription-repair coupling factor [Chlamydophila psittaci 6BC]
          Length = 1083

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 74/216 (34%), Gaps = 19/216 (8%)

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
             L+  +    ++F  AK     +   +++   +     L+ +  +F     VE+  S  
Sbjct: 22  PLLIENILPGARSFLAAKFFYERKESVVMIT-TRSRIDDLFEDLSSFLGFPPVEFPSSEI 80

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI--VVSSVSCIYGIGSV 287
           D                    +N      R      L ++   I  V +  + +    S 
Sbjct: 81  DLSPK---------------LVNIDAVGKRDKVLYDLYQKKAPIFCVTTLKALLEKTRSP 125

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           +  +   + +++GD ++   ++       Y+ + +   +G F   G  I+IFP    +  
Sbjct: 126 KDTAHQHLDIQVGDVLDPDIMIDLCKNLGYRHETLASDKGEFAYRGGIIDIFPLSSPE-P 184

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
           +R+  +G  I  I  F P        V  + I   +
Sbjct: 185 FRIEFWGEKIISIRPFNPSDQLSTGKVSKLSISPAT 220



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 57/176 (32%), Gaps = 7/176 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + VSATP    L     G     +I    L   PV         E +   +     +G 
Sbjct: 708 CLTVSATPIPRTLYMSLSGARDLSLITMPPLDRLPVSTFVLEHNEETLSAALRHELLRGG 767

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +  +          L   +       R    H ++ + E   I +  +  + +VLV   L
Sbjct: 768 QAYVIHNRIESIFRLGNTIRNLVPEARIAVAHGQMSSDELASIFQKFKDQETNVLVATAL 827

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  G+DIP    + +  ADK G       L Q  GR  R        +  +    +
Sbjct: 828 IENGIDIPNANTILVDQADKFG----MADLYQMKGRVGRWNRKAYCYFLVSHLDRL 879



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 15/132 (11%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K++R++SE+++    + L +L    +             S+    H +++  F+    Y 
Sbjct: 507 KRSRDLSEKSLILYAEKLLQLEAQRST----------TPSFIYPPHGEEVIKFEESFPYE 556

Query: 149 PSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ  AI Q+    +  +   +L+ G  G GKT   M   ++A+   QR  IVM P  
Sbjct: 557 ETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAVCDGQRQVIVMVPTT 616

Query: 204 ILAAQLYSEFKN 215
           ILA Q Y  F  
Sbjct: 617 ILANQHYETFTQ 628


>gi|325293235|ref|YP_004279099.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
 gi|325061088|gb|ADY64779.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
          Length = 533

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 17/190 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVED------VYD 573
            T+  SAT      +     +      ++ +P+      V  R   +  +D      + D
Sbjct: 209 QTLFFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKT-VTQRIVASHNKDYEKRAVLRD 267

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +     +    ++    K+   DL   L      V  +H ++    R  ++++ R G+ 
Sbjct: 268 LVRAEEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQL 327

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIP+   V   D             +  IGR  R   S       T 
Sbjct: 328 TLLVASDVAARGLDIPDVSHVFNFDVPI-----HAEDYVHRIGRTGRAGRSGKAFTLVTK 382

Query: 694 TKSIQL-AID 702
           + +  L AI+
Sbjct: 383 SDAKYLDAIE 392


>gi|313848365|emb|CBY17369.1| putative transcription-repair coupling factor [Chlamydophila
           psittaci RD1]
          Length = 1085

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 74/216 (34%), Gaps = 19/216 (8%)

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
             L+  +    ++F  AK     +   +++   +     L+ +  +F     VE+  S  
Sbjct: 24  PLLIENILPGARSFLAAKFFYERKESVVMIT-TRSRIDDLFEDLSSFLGFPPVEFPSSEI 82

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCI--VVSSVSCIYGIGSV 287
           D                    +N      R      L ++   I  V +  + +    S 
Sbjct: 83  DLSPK---------------LVNIDAVGKRDKVLYDLYQKKAPIFCVTTLKALLEKTRSP 127

Query: 288 ESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVA 347
           +  +   + +++GD ++   ++       Y+ + +   +G F   G  I+IFP    +  
Sbjct: 128 KDTAHQHLDIQVGDVLDPDIMIDLCKNLGYRHETLASDKGEFAYRGGIIDIFPLSSPE-P 186

Query: 348 WRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
           +R+  +G  I  I  F P        V  + I   +
Sbjct: 187 FRIEFWGEKIISIRPFNPSDQLSTGKVSKLSISPAT 222



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 57/176 (32%), Gaps = 7/176 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + VSATP    L     G     +I    L   PV         E +   +     +G 
Sbjct: 710 CLTVSATPIPRTLYMSLSGARDLSLITMPPLDRLPVSTFVLEHNEETLSAALRHELLRGG 769

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +  +          L   +       R    H ++ + E   I +  +  + +VLV   L
Sbjct: 770 QAYVIHNRIESIFRLGNTIRNLVPEARIAVAHGQMSSDELASIFQKFKDQETNVLVATAL 829

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  G+DIP    + +  ADK G       L Q  GR  R        +  +    +
Sbjct: 830 IENGIDIPNANTILVDQADKFG----MADLYQMKGRVGRWNRKAYCYFLVSHLDRL 881



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 15/132 (11%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K++R++SE+++    + L +L    +             S+    H +++  F+    Y 
Sbjct: 509 KRSRDLSEKSLILYAEKLLQLEAQRST----------TPSFIYPPHGEEVIKFEESFPYE 558

Query: 149 PSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ  AI Q+    +  +   +L+ G  G GKT   M   ++A+   QR  IVM P  
Sbjct: 559 ETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAVCDGQRQVIVMVPTT 618

Query: 204 ILAAQLYSEFKN 215
           ILA Q Y  F  
Sbjct: 619 ILANQHYETFTQ 630


>gi|302535753|ref|ZP_07288095.1| ATP-dependent RNA helicase [Streptomyces sp. C]
 gi|302444648|gb|EFL16464.1| ATP-dependent RNA helicase [Streptomyces sp. C]
          Length = 694

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 87/237 (36%), Gaps = 23/237 (9%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +D        A +  R ++ V T+  A+ + E L E  ++   +H  +    R  ++ D 
Sbjct: 285 KDKAPVTAAIAARKGRTIIFVRTQLGADRIAEQLIEAGVKADALHGGMTQGARTRVLADF 344

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G  + LV  ++   G+ +    LV  +D             +   GR AR   S V++
Sbjct: 345 KDGYVNALVATDVAARGIHVDGIDLVLNVDP-----AGDHKDYLHRSGRTARAGKSGVVV 399

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE-DAATTNIS 747
                 +           RR+      +   ++      +     DP + E   A +   
Sbjct: 400 SLALPHQ-----------RRQIFRLM-EDAGVDASRHIVQGAGAFDPEVAEITGARSLTE 447

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
           + A   + + K+ +  +  L KQ+  A        AA +R+E  RL +    +  +D
Sbjct: 448 VQADSANNAAKQAEREVADLTKQLERATR-----RAAELREEADRLVARSARERGED 499


>gi|289581647|ref|YP_003480113.1| helicase [Natrialba magadii ATCC 43099]
 gi|289531200|gb|ADD05551.1| helicase domain protein [Natrialba magadii ATCC 43099]
          Length = 829

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 84/195 (43%), Gaps = 19/195 (9%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-------HSEVKTLERIEIIRDLRLGK 632
           + G R+++   ++  AE LT +L +     R++          +   ++ E++ + R  +
Sbjct: 370 EGGERVIVFTESRDTAEALTAFLSDSFDAKRFVGQGDREGSDGMTQKQQQEVLDEFRAAE 429

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YAD 691
           F+VLV  ++  EGLD+PE  LV   +      + +    IQ  GR  R    +V++  A+
Sbjct: 430 FEVLVSTSVAEEGLDVPEVDLVLFYEP-----VPTAIRSIQRKGRTGRQSEGRVVVLMAE 484

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                    I   +RRREK++E   +     + + + + E +D      A     S  A 
Sbjct: 485 DTRDEAYFWI---SRRREKEMESELR---ELKGMADDLAEELDESQQSLADFGGDSSSAS 538

Query: 752 QLSLSKKKGKAHLKS 766
             + ++ + +  +  
Sbjct: 539 GAADNENESEVKVDE 553


>gi|255572248|ref|XP_002527063.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223533568|gb|EEF35307.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 650

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 69/193 (35%), Gaps = 18/193 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEIRSARTQVEDVYDE 574
              T++ SAT            +         ++   T L+   VE      +   + D 
Sbjct: 378 ARQTMLFSATFPKEIQRLATDFLFNYIFLAVGRVGSSTDLIIQRVEFVQESDKRSHLMDL 437

Query: 575 INLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++     G++      L+ V TK+ A+ L  +LY        +H +    ER + +R  R
Sbjct: 438 LHAQRANGVQGKQALTLVFVETKKGADSLEHWLYVNGFPATSIHGDRSQQEREQALRSFR 497

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G   +LV  ++   GLDIP    V   D             +  IGR  R   S     
Sbjct: 498 SGNTPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKSGLATA 552

Query: 689 YADTITKSIQLAI 701
           + +    S+ +A+
Sbjct: 553 FFNEGNASLAMAL 565


>gi|39995629|ref|NP_951580.1| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens PCA]
 gi|39982392|gb|AAR33853.1| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens PCA]
 gi|307634711|gb|ADI83374.2| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens KN400]
          Length = 443

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 89/253 (35%), Gaps = 26/253 (10%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+              +  +  +          + + GF      D R +   
Sbjct: 131 TPGRLIDYL-----------KQKVYSLKEIEMLVIDEADRMFDMGFI----ADLRFILRR 175

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGI--IVEQI-IRPTGLVDPPVEIRSARTQVEDVYD 573
                +   ++ SAT     +E       + E++ + P  +    VE        ++ + 
Sbjct: 176 LPPYDKRQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEKFP 235

Query: 574 EINL--AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +      +   R ++ V TKR AE L E L   +   R +  +V+  +R++I+ D + G
Sbjct: 236 LLLGLLRKEGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKSG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYA 690
           K  +++  ++   GL I     V   D       +     +  IGR AR     K I  A
Sbjct: 296 KLPIMIATDVASRGLHIDGVSHVINYD-----LPQDAEDYVHRIGRTARAGAEGKAISMA 350

Query: 691 DTITKSIQLAIDE 703
           D        AI E
Sbjct: 351 DEDGAFHLEAIHE 363


>gi|24379088|ref|NP_721043.1| ATP-dependent RNA helicase [Streptococcus mutans UA159]
 gi|24376988|gb|AAN58349.1|AE014905_2 putative ATP-dependent RNA helicase, DEAD-box family [Streptococcus
           mutans UA159]
          Length = 517

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 95/262 (36%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLVD-QYYIRVKENEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD +    D+L
Sbjct: 235 D-VEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDIL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R       I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I++ T++R K       Q        +  + ++    +  D  +  +        
Sbjct: 349 GYLQIIEKLTKKRMKGMKPATAQEAFQASKKVALKKIER---DFADEKIRSNFDKFTKDA 405

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
           +      S ++   ++ +L  Q
Sbjct: 406 EKLAAEFSPEELAQYILTLTVQ 427


>gi|325188274|emb|CCA22814.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 414

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 26/198 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQVEDVYDE 574
              + SAT    E+ +     +   IR           G+    V I     + + + D 
Sbjct: 216 QVALFSAT-MPQEVLEVTQKFMRDPIRIMVKRDELTLEGIKQFFVAIEREEWKFDTLCDL 274

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                    + ++   T+R  + LTE +  ++  V  MH ++   +R  I+R+ R G   
Sbjct: 275 YETLTIT--QAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSR 332

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-------- 686
           VL+  +LL  G+D+ +  LV   D        ++ + I  IGR+ R     V        
Sbjct: 333 VLITTDLLARGIDVQQVSLVVNYD-----LPLNRENYIHRIGRSGRFGRKGVAINFLTEC 387

Query: 687 -ILYADTITKSIQLAIDE 703
            + Y   I K     I+E
Sbjct: 388 DVRYLKDIEKFYNTQIEE 405


>gi|307202009|gb|EFN81574.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
          Length = 724

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 93/255 (36%), Gaps = 39/255 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ + +          + + + +   +  R     + GF         P   +
Sbjct: 238 TPGRLIDFLEKGTT--------NLRRCTYLVLDEADRM---LDMGFE--------PQIRK 278

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV--------DPPVEI---RS 563
               +RP    ++ SAT         +  + + I    G +           VEI     
Sbjct: 279 IIEQIRPDRQVLMWSATWPKEVQALAEDFLTDYIQINIGSLTLAANHNIRQIVEICQEHE 338

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
             T++  +  EI    ++G ++++ V TK+  +D+T+ +         +H +    ER  
Sbjct: 339 KETKLSQLLREIG--TERGSKMIIFVETKKKVDDITKAIKREGWSAISIHGDKSQPERDY 396

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++ + R GK  +LV  ++   GLD+ +   V   D     +  S    I  IGR  R  +
Sbjct: 397 VLSEFRNGKTMILVATDVAARGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGRCQS 451

Query: 684 SKVILYADTITKSIQ 698
           +       T   + Q
Sbjct: 452 AGTAYAYFTPNNARQ 466


>gi|302798398|ref|XP_002980959.1| hypothetical protein SELMODRAFT_178562 [Selaginella moellendorffii]
 gi|302815225|ref|XP_002989294.1| hypothetical protein SELMODRAFT_129703 [Selaginella moellendorffii]
 gi|300142872|gb|EFJ09568.1| hypothetical protein SELMODRAFT_129703 [Selaginella moellendorffii]
 gi|300151498|gb|EFJ18144.1| hypothetical protein SELMODRAFT_178562 [Selaginella moellendorffii]
          Length = 539

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 72/195 (36%), Gaps = 18/195 (9%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDP----PVEIRSARTQVEDVYDEIN 576
            T++ SAT P   EL   +     VE  +    +V+      VE+R    +   + + + 
Sbjct: 105 QTVLFSATFPRQVELLARKVLDKPVEIQVGGRSVVNKDITQTVEVRPEEDRFLRLLELLG 164

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              ++G ++L+ V ++   + L   L +       +H      +R   + D +    ++L
Sbjct: 165 EWYEKG-KVLVFVHSQEKCDSLFRDLLKAGYPCLSLHGAKDQTDRESTLSDFKSNVCNLL 223

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA-----D 691
           V  ++   GLD+ E  LV   D             +  +GR  R       +       D
Sbjct: 224 VATSVAARGLDVKELELVVNYDV-----PNHYEDYVHRVGRTGRAGRKGCAVTFIAPDED 278

Query: 692 TITKSIQLAIDETTR 706
                +  A++ + +
Sbjct: 279 RYAPDLAKALELSEQ 293


>gi|297538310|ref|YP_003674079.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp.
           301]
 gi|297257657|gb|ADI29502.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301]
          Length = 630

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 73/188 (38%), Gaps = 14/188 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVED------VYDEIN 576
            T++ SAT         + I+   + I+  G  +    I      V+D      + + + 
Sbjct: 202 QTLLFSATLDGDIARVAKQILKNPKTIQVAGQKEKHANIEQRLHYVDDMTHKNKLLEHLL 261

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +A +    +++   TKR  + L E LY    +   +H ++    R   +  LR G   VL
Sbjct: 262 IAPEVNQ-VIIFTSTKRHCDVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRQGDVKVL 320

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   G+DI     V   D  K          +  IGR  R   + + I +A  + +
Sbjct: 321 VATDVAARGIDINGISHVINYDLPKF-----AEDYVHRIGRTGRAGKTGIAISFASNMDR 375

Query: 696 SIQLAIDE 703
            I   I++
Sbjct: 376 HILRKIEQ 383


>gi|14594802|emb|CAC43286.1| translation initiation factor eIF-4A1 [Arabidopsis thaliana]
          Length = 369

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 160 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKE 219

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 220 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 277

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 278 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 332

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 333 GVAINFVTRDDERMLFDI 350


>gi|327554931|gb|AEB00819.1| vasa-like protein [Marsupenaeus japonicus]
          Length = 698

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +  +IL+ V  KR+A+ +  YL E+  R   MH +    +R + +   R G  ++LV  
Sbjct: 509 SEDEKILVFVEQKRVADFVGSYLCEKKFRATTMHGDRFQAQREQALAAFRTGVHNILVAT 568

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
            +   GLDI   G+V   D  KE         +  IGR  R  N    I + D    +
Sbjct: 569 AVAARGLDIKGIGVVVNYDLPKE-----IDEYVHRIGRTGRLGNRGMSISFYDEEVDT 621


>gi|301789077|ref|XP_002929955.1| PREDICTED: probable ATP-dependent RNA helicase DDX53-like
           [Ailuropoda melanoleuca]
          Length = 590

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 14/170 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP--------VEIRSARTQVEDVYDEI 575
            T+++SAT      +  Q  + E +I   G +D          V I +   +   + + +
Sbjct: 366 QTVMISATWSDTIHQLGQSYLKEPMIVYVGTLDLVAVNTVTQNVIITTQEEKRSLLQEFL 425

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              + Q  ++++ V  + +A+DL+  L  + I V+ +H +    +R   + D R GK  V
Sbjct: 426 QNRSPQD-KVIVFVRRRLVADDLSSDLSIQGITVQSLHGDRDQHDRERALEDFRSGKVKV 484

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           L+  +L   GLD+ +   V   D     F R+    +  +GR  R   + 
Sbjct: 485 LIATDLASRGLDVNDITHVYNYD-----FPRNIEEYVHRVGRTGRAGKTG 529


>gi|149914630|ref|ZP_01903160.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           AzwK-3b]
 gi|149811423|gb|EDM71258.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           AzwK-3b]
          Length = 470

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 65/179 (36%), Gaps = 11/179 (6%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   E      L   + + V    +    V   V   +   + + + + ++
Sbjct: 212 QTMLFSATMPKQMEEIAGSYLTHPKRVQVSPPGKAADKVTQGVHFIAKAAKGDLLVELLD 271

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               +    L+   TK  ++ L   L +    V  +H      +R   +R  R G+  VL
Sbjct: 272 --KHREELALVFARTKHGSDKLARKLEQAGYAVAAIHGNKSQGQRERALRAFRDGEVRVL 329

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           V  ++   GLDIP+   V   D        +    I    RA R+  +      D + +
Sbjct: 330 VATDVAARGLDIPDVKHVYNFDLP--NVPENYVHRIGRTARAGRDGAAVAFCAPDEMGE 386


>gi|145501031|ref|XP_001436498.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124403638|emb|CAK69101.1| unnamed protein product [Paramecium tetraurelia]
          Length = 553

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 11/167 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEINLA 578
            T++ SAT      E  +  +V+ ++   G      ++   EI   + Q E ++  ++  
Sbjct: 297 QTMLFSATLPKKIQEFTKQTLVDPLVINVGRSGQINLNVIQEILYVK-QEEKLHYLLDSL 355

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +    +++    +   +D+ EYL  + + V  +H   +  +R + ++    G+ DVLV 
Sbjct: 356 KKTTPPVVIFSEHQNDVDDINEYLLIKGVEVVGLHGGKQQEDRTKALKQFLNGQKDVLVA 415

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            ++  +GLD P+   V   D  K+       S I  IGR  R   + 
Sbjct: 416 TDVAAKGLDFPDIKHVINYDMPKD-----IESYIHRIGRTGRQGKTG 457


>gi|150021721|ref|YP_001307075.1| DEAD/DEAH box helicase domain-containing protein [Thermosipho
           melanesiensis BI429]
 gi|149794242|gb|ABR31690.1| DEAD/DEAH box helicase domain protein [Thermosipho melanesiensis
           BI429]
          Length = 901

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 4/152 (2%)

Query: 237 YVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQ 296
           Y+P  D +  ++ + +  +   R  A    L+ N     +  S    +   +   + I +
Sbjct: 20  YIPSYDVFPFEKINNSWFVRSQRIYALYLALKNNLKATATLYSITRYVMPPDILKKHIFE 79

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
           LKIGD +   E+L       Y+R       G F   GD I+    +   +  R+ +F N 
Sbjct: 80  LKIGDKITSPEVL--FSNLGYERVFNVTDGGQFSTRGDIIDFLGPN--QIPTRIELFDNI 135

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
           IE+I  F   T + I+ +E   I     Y+ P
Sbjct: 136 IEDIRTFDIATQKSIKKLEYAIILPAKEYIEP 167



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 85/207 (41%), Gaps = 23/207 (11%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVED 570
           E +  +R     + +SATP    L      I +  I    P G  +  V +     ++  
Sbjct: 526 ESFKKIRVNINILSMSATPIPRTLHMALSGIKDMSILKTPPIGRKNIQVFVSKFDERI-- 583

Query: 571 VYDEINLAAQQGLRILLT---VLT-KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
               I     +G ++L     V T K +A++L + + E  I +   H ++   +  +II+
Sbjct: 584 ARQAILREVNRGGQVLYVHNRVNTIKDVADNLKKIVPEVKIEIA--HGQMSKRKMEKIIK 641

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +   G  DVLV  +++  G+DIP    + + D+ + G  +    L Q  GR  R+     
Sbjct: 642 EFYDGNLDVLVSTSIIENGIDIPNANTLIVDDSHRYGLSQ----LYQLRGRVGRSEKRAF 697

Query: 687 ILYADTITKSIQLAIDETTRRREKQLE 713
             +           I++T + R K ++
Sbjct: 698 AYFFHPSK------INKTAQERLKAIK 718


>gi|149022054|ref|ZP_01836016.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP23-BS72]
 gi|147929898|gb|EDK80887.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP23-BS72]
          Length = 511

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 75/205 (36%), Gaps = 26/205 (12%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV 
Sbjct: 236 VAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R   S   I +        
Sbjct: 296 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGY 350

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVK-----------EKI-MEVIDPILLEDAATTN 745
              I+  T++R K         + P SV+           +KI  +  D  +  +     
Sbjct: 351 LQIIENLTKKRMK--------GLKPASVEESFQSKKQVALKKIERDFADETIRANFEKFG 402

Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQ 770
                     + ++   ++ SL  Q
Sbjct: 403 KDARKLAAEFTPEELAMYILSLTVQ 427


>gi|294901517|ref|XP_002777393.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239885024|gb|EER09209.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 515

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +D   ++      G +I++   TKR A+DLT  L         +H + K  ER  ++++ 
Sbjct: 334 KDKLKQLLERIMDGSKIVIFTDTKRAADDLTRMLRMDGWPALSIHGDKKQEERDWVLQEF 393

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + GK  +++  ++   GLD+ +   V   D     F       +  IGR  R        
Sbjct: 394 KSGKSPIMIATDVASRGLDVKDLRHVINYD-----FPGQIEDYVHRIGRTGRAGAKGSAY 448

Query: 689 YADTITK 695
              T  K
Sbjct: 449 SFFTPDK 455


>gi|157377161|ref|YP_001475761.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157319535|gb|ABV38633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 610

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 68/194 (35%), Gaps = 11/194 (5%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINL 577
            +    + SAT            + E +   I  T      +E R  +    +  + +  
Sbjct: 179 KQRQLALFSATMPEQIKRVANKYLSEPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVR 238

Query: 578 A--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               ++   I++ V T+    +L E L  R      +H ++    R   +  L+ G  D+
Sbjct: 239 VLEVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGTLDI 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           ++  ++   GLD+   G V   D           + +  IGR  R   +   IL+     
Sbjct: 299 IIATDVAARGLDVERIGHVVNYD-----IPYDTEAYVHRIGRTGRAGRTGMAILFVTHRE 353

Query: 695 KSIQLAIDETTRRR 708
             +   I+  T+ R
Sbjct: 354 MRMLRTIERATKSR 367


>gi|116200971|ref|XP_001226297.1| hypothetical protein CHGG_08370 [Chaetomium globosum CBS 148.51]
 gi|118575173|sp|Q2GUI4|DBP3_CHAGB RecName: Full=ATP-dependent RNA helicase DBP3
 gi|88176888|gb|EAQ84356.1| hypothetical protein CHGG_08370 [Chaetomium globosum CBS 148.51]
          Length = 566

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 18/179 (10%)

Query: 528 VSATPGS-----WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ-- 580
           V AT G+      E E      ++  IR    ++  VE+   R + + + + +  A +  
Sbjct: 394 VKATIGNRTRAGEEGEGNGSTELQANIR----IEQKVEVVDPRGKEQRLLELLKEAQKGS 449

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +  RIL+  L K+ A  + + L  R IRV  +H +++  +R   +   + G   VLV  
Sbjct: 450 AKNDRILVFCLYKKEAVRVEQNLERRGIRVCSIHGDLRQDQRTRSLESFKAGTTSVLVAT 509

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
           ++   GLDIPE  LV  +      F  +    +  IGR  R     K I       KS 
Sbjct: 510 DVAARGLDIPEVKLVINV-----TFPLTIEDYVHRIGRTGRAGKKGKAITLFTEHDKSH 563


>gi|312219930|emb|CBX99872.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1226

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 78/201 (38%), Gaps = 18/201 (8%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             T + SAT      +       + I    G +D      SA  +++ + + +        
Sbjct: 997  QTCMWSATWPKEVRQLASDYQNDWIQVNLGSMDL-----SAHHRIQQIVEHLETIMSDKE 1051

Query: 584  -RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +IL+   TKR+A+++T +L +       +H + +  ER  ++ + + GK  ++V  ++ 
Sbjct: 1052 NKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVA 1111

Query: 643  REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
              G+D+     V   D     +  +    +  IGR  R   +   +   T   S Q    
Sbjct: 1112 SRGIDVRNITHVFNYD-----YPNNSEDYVHRIGRTGRAGANGTAITLFTTENSKQA--- 1163

Query: 703  ETTRRREKQLEHNKKHNINPQ 723
                R   Q+    K  I+P+
Sbjct: 1164 ----RDLVQILTESKQQIDPR 1180


>gi|309262543|ref|XP_003085827.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Mus
           musculus]
 gi|309271943|ref|XP_003085450.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Mus
           musculus]
          Length = 670

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 12/144 (8%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++  + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  
Sbjct: 394 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLSEFKHGKASILIAT 453

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   GLD+ +   V   D     +  S    I  IGR AR+  +    Y      +I+ 
Sbjct: 454 DVASRGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKTGTA-YTFFTPNNIKQ 507

Query: 700 AIDETTRRREKQLEHNKKHNINPQ 723
           A D         +       INP+
Sbjct: 508 ASD------LISVLREANQAINPK 525


>gi|187918482|ref|YP_001884045.1| transcription-repair coupling factor [Borrelia hermsii DAH]
 gi|119861330|gb|AAX17125.1| transcription-repair coupling factor [Borrelia hermsii DAH]
          Length = 1122

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 101/598 (16%), Positives = 197/598 (32%), Gaps = 119/598 (19%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNF 216
           I QL+K          L+G  G  + F + K+ E      I++  N    A    +    
Sbjct: 20  IQQLIK----ENLPFTLVGHGGFFEAFLINKIKEYSGNNKIILIVNNENIADALKDDLMQ 75

Query: 217 FPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVS 276
                 E      +Y+ P  Y         K +  +E+I  +               +V 
Sbjct: 76  ITDKIYEL-----NYFSPLVYKG----IGSKSTIFSERIKFL----INFYENNPGIYIVL 122

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
             S +  I + E+  + I +++    +  K L S L++  Y++     + G F + G+ I
Sbjct: 123 LKSLLSKIPTKENLFKNIYKIQTSKLINIKNLESKLIRLGYEKTMRVTLPGEFTIKGEII 182

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTG-QKIRNVETIKIYANSHYVTPRPTLNTA 395
           +I   +  +   R+S+  + I+EI  F PLT  +K   +    I      +    ++N  
Sbjct: 183 DIHSFNKAE-PIRISLHNDTIKEIKYFNPLTQLKKGNEISEFDIIPKKEIIWNNESINRL 241

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455
             YIKE                E ++L ++I               I +   YL+     
Sbjct: 242 KHYIKE---------------NEYKKLFEQIETKYHARAEEIFYPLIGD--TYLSQE--- 281

Query: 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
                    I ED+L    E      +I  +Y+      +   E G +  +  +     F
Sbjct: 282 ---------INEDTLTINFEIPNLQEEIKKIYKEYEKLYSQAIESGEKTIAPKE----IF 328

Query: 516 EEWNCLRPTT-IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVEDVYD 573
              N L+  T I    TP +               +   LV+  +E  R   + +    +
Sbjct: 329 INLNDLKLKTNIFFVKTPAN--------------TQTEELVEFEIESGRRFFSNIALAKE 374

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           EI      G ++++   +    E L           +Y+  ++  +            K 
Sbjct: 375 EIQNWLNNGFKVIIAAESSSQKEKL-----------KYIFKDLPKI------------KI 411

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           +VL     +   L I +  +  IL++D            Q I +   +  +K I     +
Sbjct: 412 EVL----KISSSLIINKEKIAIILESDIFN-------RRQKINKVFESSRTKPIDSFIEV 460

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
            K+  +               +  H I    + ++I  +   +L +D      + + +
Sbjct: 461 EKNSHVV--------------HINHGI---GIFKQIKRIKTSLLEKDYIEIEYADNEK 501



 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 67/184 (36%), Gaps = 10/184 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + +SATP    L      + +  +++        +E          +   I     +  
Sbjct: 734 CLTLSATPIPRSLHMSLIKLRDISVLKTPPQNRIKIETYVEEFSELLIKHAIEHELSRDG 793

Query: 584 RILLTVLTKRMAEDLTEYLYERNIR---VRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           ++       +   DL + + E+ +    +  +H+ +   +   I+ D     + VL+   
Sbjct: 794 QVFFVHHNIQEL-DLIKAMLEKVVPYARIATIHARLTGDQIENIMHDFINKSYQVLLSTT 852

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL- 699
           ++  G+DI     + I +A++ G  +    L Q  GR  R+       +    + S+   
Sbjct: 853 IIENGIDIENANTIIINNANRFGLAQ----LYQLRGRVGRSSQKAFAYFLYKESSSLNES 908

Query: 700 AIDE 703
           AI+ 
Sbjct: 909 AIER 912


>gi|104779961|ref|YP_606459.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95108948|emb|CAK13644.1| putative ATP-dependent RNA helicase, DEAD box family (RhlE)
           [Pseudomonas entomophila L48]
          Length = 443

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 86/260 (33%), Gaps = 34/260 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L +   ++++           Q+  +   +  R     + GF   L +     P  
Sbjct: 131 TPGRLLDLFRQNAI--------KFGQVQTLVLDEADRM---LDLGFAEELQAVYAALP-- 177

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVE 569
                  +  T++ SAT            + + +   + P       V+  +     + +
Sbjct: 178 ------RKRQTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNAAASTVKQWLVPVDKKRK 231

Query: 570 -DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            D++  +    Q+  ++L+   T+   + L E L    +    +H +     R   +   
Sbjct: 232 ADLFCHLL-RKQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSF 290

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           +  +  VLV  ++   GLDI +  LV  LD             +  IGR  R  N    I
Sbjct: 291 KAREVQVLVATDVAARGLDIDDLPLVVNLDLPIV-----AEDYVHRIGRTGRAGNKGEAI 345

Query: 688 LYADTITKSIQLAIDETTRR 707
                    +  +I+   R+
Sbjct: 346 SLVCADEVQLLASIETLIRQ 365


>gi|54026656|ref|YP_120898.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
 gi|54018164|dbj|BAD59534.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
          Length = 602

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 82/211 (38%), Gaps = 11/211 (5%)

Query: 523 PTTIVVSAT-PGS--WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
               + SAT P +     +Q     VE  ++     +  +  R  +   +   D +    
Sbjct: 204 KQVALFSATMPAAIRKISKQYLREPVEITVKAKTQTNTNITQRWVQVSHQRKLDALTRVL 263

Query: 580 QQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +      +++ V TK+  E+L E L  R      ++ ++   +R   I  L+ G  D+LV
Sbjct: 264 EVEPFEAMIIFVRTKQGTEELAEKLRARGFSAAAINGDIAQNQRERTIGQLKSGALDILV 323

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLD+     V   D           S +  IGR  R   S   +L+     + 
Sbjct: 324 ATDVAARGLDVDRISHVVNYD-----IPHDTESYVHRIGRTGRAGRSGQALLFVAPRERH 378

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           +  AI+  TR   ++++     ++N Q V +
Sbjct: 379 LLKAIERATRHPLEEMQLPSVEDVNAQRVSK 409


>gi|294670965|ref|ZP_06735821.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307452|gb|EFE48695.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 453

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   +V   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKNPEVV--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|290562842|ref|NP_001166829.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
 gi|95102744|gb|ABF51313.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
          Length = 512

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 93/255 (36%), Gaps = 37/255 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ + +          + + + +   +  R     + GF         P   +
Sbjct: 210 TPGRLIDFLEKGTT--------NLQRCTYLVLDEADRM---LDMGFE--------PQIRK 250

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEI---RS 563
               +RP   T++ SAT      +  +  + + I    G +           V+I     
Sbjct: 251 IIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHE 310

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              ++  +  EI  + + G + ++ V TKR AE+++  +         MH +    ER E
Sbjct: 311 KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 370

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++   + G+  +LV  ++   GLD+     V   D     +  S    I  IGR  R+ +
Sbjct: 371 VLYQFKEGRASILVATDVAARGLDVDGIKYVINFD-----YPNSSEDYIHRIGRTGRSKS 425

Query: 684 SKVILYADTITKSIQ 698
                   T + S Q
Sbjct: 426 KGTSYAFFTPSNSRQ 440


>gi|80477520|gb|AAI08449.1| LOC398188 protein [Xenopus laevis]
          Length = 768

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 96/257 (37%), Gaps = 33/257 (12%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEI--------RSARTQVED 570
           P T++ SAT   W     +  + +Q  +            + +        RS +  V  
Sbjct: 372 PQTLLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRSQKAAV-- 429

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D + + +    + ++   +K  A +L+          + +H +++  ER  +++  R 
Sbjct: 430 LGDIVQVYSGSHGKTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLKGFRQ 489

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G F+VL+  N+   GLDIPE  LV +  A KE       + +   GR  R   + V I  
Sbjct: 490 GTFEVLIATNVAARGLDIPEVDLVVLYSAPKE-----ADAYVHRSGRTGRAGRTGVCISL 544

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
            +   K     ++ +T              I  + V    +  +      DA  +  ++ 
Sbjct: 545 YEPWEKHYLRNVERST-------------GITFKRVGIPSLMNVAKSSSADAIKSLDTVP 591

Query: 750 AQQLSLSKKKGKAHLKS 766
           A  +   K+  +  ++ 
Sbjct: 592 ADVIEHFKEYAQELIEK 608


>gi|321469269|gb|EFX80250.1| putative germ-line specific RNA helicase vasa protein [Daphnia
           pulex]
          Length = 761

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +I++ V +K+ A+ +  YL   +I+   +H +    +R E +RDL+ GK +VLV  N+  
Sbjct: 580 KIIVFVDSKKTADFVAVYLCNNDIQATSIHGDRLQSQREEALRDLKSGKRNVLVATNVAA 639

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADT 692
            GLDI     V   D             +  IGR  R  N    I + D 
Sbjct: 640 RGLDIEGVNYVINYD-----LPSDIEEYVHRIGRTGRVGNVGHSISFFDE 684


>gi|118470234|ref|YP_889292.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium smegmatis str. MC2 155]
 gi|118171521|gb|ABK72417.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium smegmatis str. MC2 155]
          Length = 581

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 69/161 (42%), Gaps = 9/161 (5%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++G  +++ V TK+  E++ + L  R      ++ ++   +R   I  L+ G  D+L+ 
Sbjct: 257 VEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            ++   GLD+     V   D           S +  IGR  R   S   +L+     + +
Sbjct: 317 TDVAARGLDVERISHVINYD-----IPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHL 371

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKE---KIMEVIDP 735
             +I++ TR +  + E     ++N Q V +    I + ++ 
Sbjct: 372 LKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNA 412


>gi|307198933|gb|EFN79685.1| Probable ATP-dependent RNA helicase DDX52 [Harpegnathos saltator]
          Length = 452

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 16/189 (8%)

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTG--------LVDPPVEIRSARTQVEDVYDEINLA 578
           + SAT      + C+  +   +    G        +    V + S + ++ ++ + I   
Sbjct: 212 MFSATNTPVVTKWCRRNMKRLVTVTVGQRNAATDLVEQELVFVGSEKGKLMELRNMIRKG 271

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                 +L+ V +K  A++L   L    + V  +H++    +R   +R  R GK  +L+ 
Sbjct: 272 VAPP--VLIFVQSKERAQELFNELIYDGVYVDVIHADRTVTQRDNTVRCFREGKIWMLIC 329

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
             L+  G+D     LV   D     F  S  S I  IGR  R  +  K I +  T   + 
Sbjct: 330 TELMGRGIDFIGVNLVVNYD-----FPSSAISYIHRIGRTGRAGHKGKAITFFTTQDTAN 384

Query: 698 QLAIDETTR 706
             +I    R
Sbjct: 385 LRSIATVIR 393


>gi|300783035|ref|YP_003763326.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
 gi|299792549|gb|ADJ42924.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
          Length = 598

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 92/259 (35%), Gaps = 36/259 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +          ++ H+ + ++ G+   +        + GF LP     R LR  
Sbjct: 200 TPGRLLD--------LAEQQHLVLGKVRGLVLDEADEM---LDLGF-LPDI--ERILRMV 245

Query: 517 EWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV------- 568
                   T++ SAT PG   +       + Q        +    I    TQ        
Sbjct: 246 PDER---QTMLFSATMPGP--IITLARTFLRQPTHIRAEENDASAIHERTTQFVYRAHSM 300

Query: 569 --EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
              +V   +  A  +GL  ++   TKR A+ + + L ER      +H ++    R + +R
Sbjct: 301 DKPEVIARVLQAEDRGL-TMIFSRTKRTAQKVADDLVERGFAAAAVHGDLGQGAREQALR 359

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R GK DVLV  ++   G+DI +   V             + + +  IGR  R   + V
Sbjct: 360 AFRSGKVDVLVATDVAARGIDIDDVTHVINYQC-----PDDEKTYVHRIGRTGRAGRTGV 414

Query: 687 -ILYADTITKSIQLAIDET 704
            +   D         I +T
Sbjct: 415 AVTLVDWDEMPRWKLISDT 433


>gi|71906757|ref|YP_284344.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Dechloromonas aromatica RCB]
 gi|71846378|gb|AAZ45874.1| ATP-dependent RNA helicase CsdA [Dechloromonas aromatica RCB]
          Length = 606

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 67/191 (35%), Gaps = 12/191 (6%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVE-----DVYDEIN 576
             T + SAT         Q  +VE + I+          IR    QV      D    I 
Sbjct: 181 HQTALFSATMPEQIRRVAQKYLVEPREIKIKSATATVAAIRQVYWQVSGMHKLDALTRIL 240

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +     ++ V TK    +L + L  R      ++ ++    R  +I  L+ G  D++
Sbjct: 241 EVEEDFDAAIIFVRTKTATVELADKLSARGYAAAALNGDLNQQMRERVIEQLKSGALDIV 300

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           +  ++   G+D+P    V   D           + +  IGR  R   +   IL+      
Sbjct: 301 IATDVAARGIDVPRVSHVVNYD-----IPYDTEAYVHRIGRTGRAGRTGNAILFVAPREI 355

Query: 696 SIQLAIDETTR 706
            +   I+  TR
Sbjct: 356 RMLRTIERATR 366


>gi|146308743|ref|YP_001189208.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145576944|gb|ABP86476.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 447

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 94/265 (35%), Gaps = 36/265 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +           ++ V   Q+  +   +  R     + GF        R L  E
Sbjct: 131 TPGRLLD--------LYRQNAVKFAQLQTLVLDEADRM---LDLGFA-------RELD-E 171

Query: 517 EWNCL--RPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVE 569
            ++ L  R  T++ SAT      +    ++ + +   + P       V+  +     + +
Sbjct: 172 LFSALPKRRQTLLFSATFSDVIRQMAGELLRDPVSVEVSPRNAAAKSVKQWLIPVDKKRK 231

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                  L  ++  ++L+   T++  + L + L    +    +H +     R+  +   +
Sbjct: 232 SELFLHLLQEKRWGQVLVFAKTRKGVDQLEQELLAMGVSADSIHGDKPQPSRLRALERFK 291

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G+  +LV  ++   GLDI +  LV  LD        +    +  IGR  R  ++   + 
Sbjct: 292 AGEVQILVATDVAARGLDIDDLPLVVNLD-----LPINAEDYVHRIGRTGRAGSTGEAVS 346

Query: 689 YADTITKSIQLAIDETTR----RRE 709
                   +  AI+   R    RRE
Sbjct: 347 LVCADEVELLAAIERLIRQVLPRRE 371


>gi|154344931|ref|XP_001568407.1| ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134065744|emb|CAM43518.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 860

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 93/253 (36%), Gaps = 26/253 (10%)

Query: 458 PPTLFEYIPEDS-------LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR-LPSCMD 509
           P  L +   E+         L +DE+   +        G   +   L    +  +P+  D
Sbjct: 534 PGRLRDMFNEEYLSFSAIKFLILDEADRMLE------MGFEEQIEELVASRYTDMPTVDD 587

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
            +   F       P  I+  A    +   +   + V ++   T  +   +E      +++
Sbjct: 588 RQTFMFS---ATFPQRILNLA--KRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDNEKMD 642

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   I       + +L+ V TK+MAED+   L+   I    +H + +  +R   + D +
Sbjct: 643 RLLQIIYGHEMSDM-VLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFK 701

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
                +LV  ++   GLDIP+   V   D  +E            IGR  R  N   I  
Sbjct: 702 QKVTPILVATDVASRGLDIPDVAHVVQFDLPQE-----MDDYTHRIGRTGRAGNKG-IAT 755

Query: 690 ADTITKSIQLAID 702
           A     + +LA+D
Sbjct: 756 AFYNRNNRRLALD 768


>gi|34582313|sp|Q8K301|DDX52_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX52; AltName:
           Full=ATP-dependent RNA helicase ROK1-like; AltName:
           Full=DEAD box protein 52
 gi|20809366|gb|AAH29094.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Mus musculus]
          Length = 598

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G +  +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 404 MRELVKKGFKPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 463

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K + +  
Sbjct: 464 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNRGKAVTFFT 518

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 519 EDDKPLLRSV 528


>gi|325089715|gb|EGC43025.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Ajellomyces
           capsulatus H88]
          Length = 1199

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 88/252 (34%), Gaps = 28/252 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     VE I+    +V P +    E+R+  T+   +   + 
Sbjct: 747 QTVLFSATFPRNMEALARKTLAKPVEIIVGGKSVVAPEITQIVEVRNQDTKFVRLLALLG 806

Query: 577 LA----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                   +  R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 807 ELYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKAGV 866

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F +L+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 867 FPILIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 919

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K      P+ V++ +   ++ +       +      
Sbjct: 920 --------LTEDQERYSVDISKALKQSGQPVPEPVQKLVNSFMEKVKAGKEKASGSGFGG 971

Query: 751 QQLSLSKKKGKA 762
           + L    ++  A
Sbjct: 972 KGLERLDQERDA 983


>gi|303388373|ref|XP_003072421.1| DEAD box ATP-dependent RNA helicase [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303301561|gb|ADM11061.1| DEAD box ATP-dependent RNA helicase [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 502

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 96/263 (36%), Gaps = 38/263 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L + + +D  + + E  + +                L + GF +P           
Sbjct: 217 TPGRLIDLLHKD-KVDLSEVRMFV----------LDEADKLLDMGFEMPIR------EIH 259

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPP----VEIRSARTQVE 569
           ++      T + SAT            + +    I  P+  +       VE+R+ +  + 
Sbjct: 260 KFVPKNTQTCLFSATYSPKLTRMINYFLPDDKVSIEIPSETLKNIRQDIVEVRNKKKMLL 319

Query: 570 DVYDEINLAAQQGLR-------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           ++     +  +   R       +L+ V  K    ++ + L +  I    +H + +  +R 
Sbjct: 320 NILRSSEINLKGSWRMEVQPDKVLVFVERKSECGEVEKTLKKNGILCVTLHGDKEQSDRN 379

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E ++  R G+F V+V  ++   G+DI +  LV   D  K+         I  IGR  R  
Sbjct: 380 EALKGFRNGRFPVMVATSVAARGIDIKDVKLVINYDIPKD-----IKEYIHRIGRTGREG 434

Query: 683 NSK-VILYAD-TITKSIQLAIDE 703
            S   I + D  ++   + A+ E
Sbjct: 435 KSGRSISFYDGGMSADFKKALIE 457


>gi|212710200|ref|ZP_03318328.1| hypothetical protein PROVALCAL_01259 [Providencia alcalifaciens DSM
           30120]
 gi|212687199|gb|EEB46727.1| hypothetical protein PROVALCAL_01259 [Providencia alcalifaciens DSM
           30120]
          Length = 428

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 113/352 (32%), Gaps = 50/352 (14%)

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE---ELKMRLIELEKEGRLLEAQRLE 423
           TG+ +  + +   +  +H        N     I     EL +++        L E   L+
Sbjct: 57  TGKTLAFLTSTFHFLLTHPAIEGKKTNQPRALIMAPTRELAVQI--YSDAKELAEYTGLK 114

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
             + Y  +  +       +++    L G         L +Y          + HV +  I
Sbjct: 115 MGLAYGGDGYDEQLRV--LQDGVDILIGTTGR-----LIDY--------AKQGHVDLAAI 159

Query: 484 SGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
             +   +  R   L   GF         R+PS  D   L F         T+       +
Sbjct: 160 QVIVLDEADRMYDL---GFIKDIRWLFRRMPSATDRLNLLFSA-------TLSYRVRELA 209

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG--LRILLTVLTK 592
           +E       I  + ++ TG          +    E+    +    ++    R ++   TK
Sbjct: 210 FEQMNSPEYIEVEPLQKTGHRIKEELFYPSN---EEKMRLLQTLLEEEWPERCIIFANTK 266

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
              +D+  +L     RV  +  +V   +R+ I+     G+ D+LV  ++   GL IP   
Sbjct: 267 HRCDDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGQIDILVATDVAARGLHIPSVT 326

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
            V   D             +  IGR  R   S   I  A         AI+E
Sbjct: 327 HVFNYD-----LPDDCEDYVHRIGRTGRAGESGNSISLACEEYALNLPAIEE 373


>gi|171319485|ref|ZP_02908588.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171095294|gb|EDT40280.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 481

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V T+   E L   L E    V  +H +     R+  +   + G+  +LV  ++   
Sbjct: 247 ALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAAR 306

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA---- 700
           GLDI +  LV  +D             +  IGR  R   S V +      ++ QLA    
Sbjct: 307 GLDIDDLPLVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEA 361

Query: 701 -IDETTRRREKQLEHNKKHNINPQS 724
            I +T  RRE++     +H   P++
Sbjct: 362 LIGQTL-RREEEPGFEAEHR-VPET 384


>gi|170701192|ref|ZP_02892163.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170133898|gb|EDT02255.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 542

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V T+   E L   L E    V  +H +     R+  +   + G+  +LV  ++   
Sbjct: 308 ALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAAR 367

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA---- 700
           GLDI +  LV  +D             +  IGR  R   S V +      ++ QLA    
Sbjct: 368 GLDIDDLPLVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEA 422

Query: 701 -IDETTRRREKQLEHNKKHNINPQS 724
            I +T  RRE++     +H   P++
Sbjct: 423 LIGQTL-RREEEPGFEAEHR-VPET 445


>gi|167527009|ref|XP_001747837.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773586|gb|EDQ87224.1| predicted protein [Monosiga brevicollis MX1]
          Length = 532

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 68/186 (36%), Gaps = 15/186 (8%)

Query: 522 RPTTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
              T++ SAT            L+    + V ++   +  +   V       +   + D 
Sbjct: 349 IRQTLMFSATFPKDIQMLAQDFLDDYVHLSVGRVGSTSENIQQIVHWIDEADKRPSLLDL 408

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I+ A+ + L  L+ V TK+ A+ L  YL  +      +H +    ER E + D R G+  
Sbjct: 409 ISAASSEDL-FLIFVETKKAADALEYYLTMQGRPATSIHGDRTQYEREEALADFRAGRRP 467

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADT 692
           +LV   +   GLDIP    V   D             +  IGR  R  +    V  + D 
Sbjct: 468 ILVATAVAARGLDIPNVKHVINFD-----LPSDIDEYVHRIGRTGRAGHKGTAVSFFNDK 522

Query: 693 ITKSIQ 698
                +
Sbjct: 523 NRNVAR 528


>gi|115361005|ref|YP_778142.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115286333|gb|ABI91808.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 511

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V T+   E L   L E    V  +H +     R+  +   + G+  +LV  ++   
Sbjct: 281 ALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAAR 340

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA---- 700
           GLDI +  LV  +D             +  IGR  R   S V +      ++ QLA    
Sbjct: 341 GLDIDDLPLVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEA 395

Query: 701 -IDETTRRREKQLEHNKKHNINPQS 724
            I +T  RRE++     +H   P++
Sbjct: 396 LIGQTL-RREEEPGFEAEHR-VPET 418


>gi|119493424|ref|XP_001263902.1| ATP dependent RNA helicase (Dhh1), putative [Neosartorya fischeri
           NRRL 181]
 gi|142981160|sp|A1D8G1|DHH1_NEOFI RecName: Full=ATP-dependent RNA helicase dhh1
 gi|119412062|gb|EAW22005.1| ATP dependent RNA helicase (Dhh1), putative [Neosartorya fischeri
           NRRL 181]
          Length = 507

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 82/251 (32%), Gaps = 32/251 (12%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 215 SFHPKDRQVMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVH- 273

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 274 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNR 325

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 326 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 380

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQ-LEHNKKHNI----NPQSVKEKIMEVIDPILL 738
             + +          L   E     E Q +  N    +    +P+++   I     P  +
Sbjct: 381 LGLAINLINWDDRFNLYKIEQELGTEIQPIPQNIDKKLYVYDSPETIPRPISNPSQPRQI 440

Query: 739 EDAATTNISID 749
            +      + D
Sbjct: 441 TNTPANTSTAD 451


>gi|91092124|ref|XP_972501.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68
           [Tribolium castaneum]
          Length = 540

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 65/164 (39%), Gaps = 14/164 (8%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           L+      + QII      +         T++  +  EI   A++  + ++ + TK+  +
Sbjct: 302 LQLSANHNILQIIDVCQEYEKE-------TKLSTLLKEIM--AEKENKTIIFIETKKRVD 352

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           ++T  +         +H +    ER  +++D R GK  +LV  ++   GLD+ +   V  
Sbjct: 353 EITRKMKRDGWPAVCIHGDKSQQERDWVLQDFRTGKAPILVATDVAARGLDVEDVKFVIN 412

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            D     +  +    +  IGR  R+  +       T   + + A
Sbjct: 413 FD-----YPSNSEDYVHRIGRTGRSQRTGTAYTFFTPANANKAA 451


>gi|194290281|ref|YP_002006188.1| dead/deah box helicase/ATP-dependent RNA helicase [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224116|emb|CAQ70125.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP-DEPENDENT
           RNA HELICASE (C-terminal)(rhlE-like) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 624

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 69/193 (35%), Gaps = 15/193 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIR----SARTQVEDVYDEIN 576
            T++ SAT  +   +     + +     I         +E R       +  E + D + 
Sbjct: 246 QTLMFSATLDARIAQLASRQLKDPQRIEIAAARADQSHIEQRLHFTDDMSHKERLLDHLL 305

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             A      ++   TKR A+ L E L +       +H ++    R   +  LR G   VL
Sbjct: 306 RDASLKQ-AIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNLRVL 364

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+D+P+   V   D  K+         +  IGR  R   S + +        
Sbjct: 365 VATDVAARGIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGIAINLVNHNDM 419

Query: 697 IQ-LAIDE-TTRR 707
            Q   I+  T +R
Sbjct: 420 FQWRRIERFTNQR 432


>gi|260204506|ref|ZP_05771997.1| hypothetical protein MtubK8_09388 [Mycobacterium tuberculosis K85]
 gi|289573913|ref|ZP_06454140.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis K85]
 gi|289538344|gb|EFD42922.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis K85]
          Length = 563

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 67/191 (35%), Gaps = 9/191 (4%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEINLAA 579
                 + SAT      +     + +             E I  +  QV    D +    
Sbjct: 186 KYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDALTRVL 245

Query: 580 QQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +      +++ V TK+  E++ E L  R      +  +V   +R   I  LR G  D+LV
Sbjct: 246 EVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILV 305

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-S 696
             ++   GLD+     V   D           S +  IGR  R   S   L   +  +  
Sbjct: 306 ATDVAARGLDVERISHVLNYD-----IPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH 360

Query: 697 IQLAIDETTRR 707
           +  AI++ TR+
Sbjct: 361 LLKAIEKATRQ 371


>gi|157119649|ref|XP_001653435.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108875244|gb|EAT39469.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 911

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 69/193 (35%), Gaps = 26/193 (13%)

Query: 519 NCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
             +RP    ++ SAT         +  + + I    G ++      SA   +  + D   
Sbjct: 404 EQIRPDRQVLMWSATWPKEVQALAEDFLHDYIQINIGSLNL-----SANHNIHQIVDVCE 458

Query: 577 LAAQQGL--------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
              ++G               +I++ V TK+  EDL + +         +H +    ER 
Sbjct: 459 EGEKEGKLLSLLKEISSDVNSKIIIFVETKKKVEDLLKNIVRDGYGATSIHGDKSQSERD 518

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
            +++D R GK  +LV  ++   GLD+ +   V   D     +  S    I  IGR  R  
Sbjct: 519 YVLQDFRHGKSTILVATDVAARGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGRCS 573

Query: 683 NSKVILYADTITK 695
           +        T   
Sbjct: 574 SYGTAYTFFTPGN 586


>gi|322493239|emb|CBZ28524.1| putative DEAD box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 389

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 67/180 (37%), Gaps = 15/180 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE--------QIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             I+VSAT  +  LE  +  + E          I    +    V +   + + + + +  
Sbjct: 191 QIILVSATLPADVLEMTEKFMTEPASILVKRDEITVDSVKQYFVSVDEEKNKFDVLMELY 250

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +         ++   T++  E L + +      V  MH ++   ER EI+R  R G   V
Sbjct: 251 DSLTIAH--AVVFCNTRKKVEQLAKKMTREKFAVTAMHGDMPQAERDEIMRQFRNGHSRV 308

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  +L   G+D+    LV   D        S+   I  IGR  R   + + +      +
Sbjct: 309 LITTDLWARGIDVERVSLVLSYD-----LPLSREQYIHRIGRTGRMGRTGLAITFVRHDE 363


>gi|317490115|ref|ZP_07948604.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|316910820|gb|EFV32440.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
          Length = 509

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 66/185 (35%), Gaps = 22/185 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTG-LVDPPVEIRSART-----QVEDVYDEINLA 578
           T +V ATP   +       I   I +  G L++ P  +  AR       VE     I   
Sbjct: 169 TTIVDATPADRQTLLFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANF 228

Query: 579 AQ-----------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            +              R+++   TK   ED  E L +   R   +HS+    +R   + +
Sbjct: 229 KKPELLQALLEEKGSDRVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDN 288

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            R G+  +LV  ++L  G+D+P+   V   D             +  IGR  R       
Sbjct: 289 FRRGRTSILVATDVLARGIDVPDVDHVINFD-----LPDMPEDYVHRIGRTGRAGEQGFA 343

Query: 688 LYADT 692
           +   T
Sbjct: 344 VSFVT 348


>gi|307167458|gb|EFN61031.1| Probable ATP-dependent RNA helicase DDX52 [Camponotus floridanus]
          Length = 498

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 80/228 (35%), Gaps = 24/228 (10%)

Query: 551 PTGLVDPPV-EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
            T +VD  +  + S R ++    + I         +L+ V +K  A++L   L    I V
Sbjct: 288 ATDMVDQEILFVGSERGKLLAFRNMIQKGISPP--VLVFVQSKERAQELFNELIYDGINV 345

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H++  T +R  I+R  R G+  VL+   L+  G+D     LV   D     F  S  
Sbjct: 346 DVIHADRTTTQRDNIVRCFREGQIWVLICTELMSRGIDFKGVNLVINYD-----FPPSAI 400

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP------Q 723
           S I  IGR  R  +    +   T   ++ L        R             P      +
Sbjct: 401 SYIHRIGRTGRAGHRGKAITFFTRQDTLNL--------RSIAALMRASGCDVPDYMLAMK 452

Query: 724 SVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM 771
              +K    ++           +    Q+   S +  K     L K+M
Sbjct: 453 KHSKKERRKLERTAPAREKILTVPTYKQRKRKSHEITKK--SKLEKEM 498


>gi|301166259|emb|CBW25834.1| putative ATP-dependent RNA helicase [Bacteriovorax marinus SJ]
          Length = 431

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 84/255 (32%), Gaps = 34/255 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR--LPSCMDNRPLR 514
            P  L +++           H+ + ++      +  R     + GF   +   ++  P  
Sbjct: 132 TPGRLLDFLQRG--------HIKLDELETFVLDEADRM---LDMGFIKDIEKIIERLP-- 178

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE------IRSARTQV 568
                  +  T+  SAT      +    I+    I        PVE      I   R Q 
Sbjct: 179 ------KKRQTLFFSATMPKDISKLASTILTRPKIIEVSPPSTPVESIAQYLIHIDRVQK 232

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             +  +I         +++   TK  A+ + ++L +  I    +HS      R + +   
Sbjct: 233 PKLLKKIIN-ESVSESVIVFTRTKYGADRVCKHLMKAGIESSSIHSNRSQGAREKALAAF 291

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R  K   LV  ++   G+D+     V   D   E       S I  IGR AR   S V  
Sbjct: 292 RNKKIKALVATDIAARGIDVDGISHVINYDVPLE-----AESYIHRIGRTARAGKSGVAY 346

Query: 689 -YADTITKSIQLAID 702
            + D        A++
Sbjct: 347 TFCDPAETKSLKAVE 361


>gi|239929077|ref|ZP_04686030.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 428

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 16/191 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE------ 574
           R  T++ SAT PG+      + +     IR T   D    + + +  V   ++       
Sbjct: 154 RRQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTKQFVYRAHNMDKPEMV 213

Query: 575 --INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +GL  ++   TKR A DL + L +R      +H ++    R + +R  R GK
Sbjct: 214 ARILQAEGRGL-AMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGK 272

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            DVLV  ++   G+D+     V    + +E     + + +  IGR  R       I   D
Sbjct: 273 VDVLVCTDVAARGIDVEGVTHVINYQSPEE-----EKTYLHRIGRTGRAGAKGTAITLVD 327

Query: 692 TITKSIQLAID 702
                    I+
Sbjct: 328 WDDIPRWQLIN 338


>gi|209885134|ref|YP_002288991.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
 gi|209873330|gb|ACI93126.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
          Length = 469

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 66/189 (34%), Gaps = 16/189 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-----QIIRP----TGLVDPPVEIRSARTQVEDVYDE 574
            T+  +AT    E+ +     +      +I RP    T +    + I S      ++  +
Sbjct: 179 QTLFFTAT-MPPEIRRITETFLHNPEKVEISRPASTATTVTQSQIGIGSDAHAKRELLRQ 237

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +   A+     ++    KR    L + L +       +H ++    R+  +   R G+  
Sbjct: 238 LLRDAKDLKNAIIFCNRKRDVAILHKSLQKHGFGAAALHGDMDQSARMTALDQFRKGELP 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           +LV  ++   GLDIPE   V   D             +  IGR  R       I      
Sbjct: 298 LLVASDVAARGLDIPEVSHVFNFDV-----PYHPDDYVHRIGRTGRAGRLGTAISIVSPT 352

Query: 694 TKSIQLAID 702
            +   LAI+
Sbjct: 353 DQKSILAIE 361


>gi|303287833|ref|XP_003063205.1| dead-box ATP-dependent RNA helicase [Micromonas pusilla CCMP1545]
 gi|226455037|gb|EEH52341.1| dead-box ATP-dependent RNA helicase [Micromonas pusilla CCMP1545]
          Length = 479

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 9/146 (6%)

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +   +E+     + + + + +     Q L+ ++   TKRM + +   +         +H 
Sbjct: 250 ISQVIEVCGGFQKQQRLMEVLRNPPAQPLKAIVFCSTKRMCDQIGRSMGGMG---AVIHG 306

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           + +  ER  II   + G+  VLV  ++   GLDI E  LV   D     F       +  
Sbjct: 307 DKEQRERDYIINQFKSGRVPVLVATDVAARGLDIKEVNLVVNFD-----FPNQIEDYVHR 361

Query: 675 IGRAARNVNS-KVILYADTITKSIQL 699
           IGR  R  N      + +    ++  
Sbjct: 362 IGRTGRAGNKGHAHSFIEPGEGNMAR 387


>gi|149244712|ref|XP_001526899.1| eukaryotic initiation factor 4A-12 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032453|sp|A5DWJ1|FAL1_LODEL RecName: Full=ATP-dependent RNA helicase FAL1
 gi|146449293|gb|EDK43549.1| eukaryotic initiation factor 4A-12 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 399

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 22/191 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             +VVSAT     LE       + +        +  +G+    ++      + +   D+Y
Sbjct: 201 QVVVVSATLTHEVLEMTGKFTTDPVKILVKREEVSLSGIKQYYIQCEKEDWKFDTLCDLY 260

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TK     LT+ + ++N  V  MH ++K  ER  I+ D R G 
Sbjct: 261 DNLTIT-----QAVIFCNTKIKVNWLTDQMRKQNFTVVAMHGDMKQEERDAIMNDFRSGN 315

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             VL+  ++   G+D+ +  LV   D         K + I  IGR+ R       +   T
Sbjct: 316 SRVLISTDVWARGIDVQQISLVINYD-----LPLDKENYIHRIGRSGRFGRKGTAINLLT 370

Query: 693 ITKSIQ-LAID 702
            + +I+  A++
Sbjct: 371 KSDTIELKALE 381


>gi|284006573|emb|CBA71834.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
          Length = 423

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 117/370 (31%), Gaps = 58/370 (15%)

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE---ELKMRLIELEKEGRLLEAQRLE 423
           TG+ +  + +   Y  +H       +N     I     EL +++        L     L+
Sbjct: 52  TGKTLAFLTSTFHYLLTHPTNSERQVNQPRALIMAPTRELAVQI--YTDAKELAAITGLK 109

Query: 424 QRITYDLEMLET--TGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIP 481
             + Y  +  +         ++      TGR        L +Y          + H+ + 
Sbjct: 110 MGLAYGGDGYDEQLHVLQSGVDILIG-TTGR--------LIDY--------AKQGHIHLG 152

Query: 482 QISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           +I  +   +  R   L   GF         R+P       L F      R   +      
Sbjct: 153 RIQVVVLDEADRMYDL---GFIKDIRWLFRRMPPAAQRLNLLFSATLSYRVQELAFEQMN 209

Query: 533 GSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
               +E   Q     +I           ++R  +T +E+         +   R ++   T
Sbjct: 210 QPEYIEVEPQQKTGHRIKEELFYPSNEEKMRLLQTLIEE---------EWPERCIIFANT 260

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           K   ED+  +L     RV  +  +V   +R+ I+     G  D+LV  ++   GL IP  
Sbjct: 261 KHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGHLDILVATDVAARGLHIPSV 320

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRREK 710
             V   D             +  IGR  R   S   I  A         AI+E     + 
Sbjct: 321 THVFNYD-----LPDDCEDYVHRIGRTGRAGESGHSISLACEEYSLNLPAIEE---YIQH 372

Query: 711 QL---EHNKK 717
           Q+   ++N +
Sbjct: 373 QIPVSKYNSE 382


>gi|171688604|ref|XP_001909242.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944264|emb|CAP70374.1| unnamed protein product [Podospora anserina S mat+]
          Length = 678

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 67/214 (31%), Gaps = 36/214 (16%)

Query: 568 VEDVYDEINLAAQ---QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           + D+      A     +    L+  +       LTE      I  RY+  +    ER E 
Sbjct: 279 LNDIVVRAWFAKAAPPKRQSTLVFCVDLSHVAALTERFRHHGIDARYVFGDTPAKERAET 338

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +   +  +F VL+   +  EG DIP    V +    +     S+  LIQ IGR  R    
Sbjct: 339 LEKFKKKEFPVLLNCGVFTEGTDIPNIDCVVLARPTR-----SRNLLIQMIGRGMRLHEG 393

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS-VKEKIMEVIDPILLEDAAT 743
           K   +   +  S+ + I  T               ++P   V EK    +  +  E    
Sbjct: 394 KENCHVIDMVASLDVGIITT----------PTLFGLDPDELVAEKTGGELLALAREGGEK 443

Query: 744 TNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
              +                     K+M  AA  
Sbjct: 444 KETAEGR-----------------EKRMSKAAKK 460



 Score = 42.8 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 12/129 (9%)

Query: 106 LARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAA-----IAQL 160
           + RLI++   L ++ K  T       +      T  ++  +  P+  Q  A     I  +
Sbjct: 2   MKRLIKTALRLKESPKDPTTSFQLWPSRPFTTTTT-RLSQESPPTPIQLRAYQEECIQAV 60

Query: 161 LKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP------AIVMAPNKILAAQLYSEFK 214
           L  I    K   +   TG+GKT     +I+ +  P       +++A  + L  Q     +
Sbjct: 61  LTSITQGHKRLGISLATGAGKTVIFTHLIDRVTPPNPQATRTLILAHRRELVEQAARHCQ 120

Query: 215 NFFPHNAVE 223
           + +P+  VE
Sbjct: 121 SAYPNKTVE 129


>gi|148984940|ref|ZP_01818193.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|307127794|ref|YP_003879825.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
 gi|147922962|gb|EDK74078.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|301800413|emb|CBW33045.1| DEAD box helicase family protein [Streptococcus pneumoniae OXC141]
 gi|306484856|gb|ADM91725.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
          Length = 524

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 75/205 (36%), Gaps = 26/205 (12%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV 
Sbjct: 236 VAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R   S   I +        
Sbjct: 296 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGY 350

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVK-----------EKI-MEVIDPILLEDAATTN 745
              I+  T++R K         + P SV+           +KI  +  D  +  +     
Sbjct: 351 LQIIENLTKKRMK--------GLKPASVEESFQSKKQVALKKIERDFADETIRANFEKFG 402

Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQ 770
                     + ++   ++ SL  Q
Sbjct: 403 KDARKLAAEFTPEELAMYILSLTVQ 427


>gi|161899219|ref|XP_001712836.1| translation initiation factor 4A2 [Bigelowiella natans]
 gi|75756329|gb|ABA27224.1| translation initiation factor 4A2 [Bigelowiella natans]
          Length = 378

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 72/199 (36%), Gaps = 20/199 (10%)

Query: 510 NRPLRFEEWNCLRP-----TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVD 556
           N+  + + +N  R        I+ SAT   + L+     +++ +        I    +  
Sbjct: 166 NKNFKIDIFNIYRYLNSKVQIIICSATIPLYTLQAASKFLLDPVMILMRKEEINIDKIKQ 225

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
             + +     ++  + D I      G  +L+   T R A  +   L   N  V  +H  V
Sbjct: 226 FYISVFIEENKLLALLD-IFETLLVGQ-VLIFCNTIRKANWIHNKLLANNFNVGLIHGRV 283

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
              ER  I ++ R GK   LV  ++   GL+IPE  LV   D         K   +  IG
Sbjct: 284 IQKERTNIFKNFRDGKTRALVTTDVSSRGLNIPEVSLVINYDIPTF-----KDVYLHRIG 338

Query: 677 RAARNVNSKVILYADTITK 695
           R  R     V +    +  
Sbjct: 339 RTGRFGRQGVAINFAKLRD 357


>gi|330923164|ref|XP_003300130.1| hypothetical protein PTT_11286 [Pyrenophora teres f. teres 0-1]
 gi|311325925|gb|EFQ91808.1| hypothetical protein PTT_11286 [Pyrenophora teres f. teres 0-1]
          Length = 483

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 81/209 (38%), Gaps = 21/209 (10%)

Query: 524 TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T + SAT           ++ +  Q  I    +     +   VE+ +   + + +   +
Sbjct: 241 QTCMWSATWPKEVRQLAADYQKDWIQVNIGSMDLSANHRIQQIVEVCTEFEKRDRMAKHL 300

Query: 576 NLA-AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               + +  +IL+   TKR+A+++T +L +       +H + +  ER  ++ + + GK  
Sbjct: 301 ETIMSDKDNKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSP 360

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           ++V  ++   G+D+     V   D     +  +    +  IGR  R   +   +   T  
Sbjct: 361 IMVATDVASRGIDVRNITHVFNYD-----YPNNSEDYVHRIGRTGRAGANGTAITLFTTD 415

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            S Q        R   Q+    K  I+P+
Sbjct: 416 NSKQA-------RDLVQILTESKQQIDPR 437


>gi|238879720|gb|EEQ43358.1| hypothetical protein CAWG_01593 [Candida albicans WO-1]
          Length = 562

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 72/183 (39%), Gaps = 16/183 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E++Q     +   I+ T           +   VE+    ++ + +   
Sbjct: 308 QTLMWSAT-WPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKH 366

Query: 575 INLAA-QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +  A  ++  +IL+   TKR  +++T YL         +H + +  ER  ++ + R GK 
Sbjct: 367 LESALNEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKT 426

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+     V   D        +    +  IGR  R   S   +   T 
Sbjct: 427 SIMVATDVAARGIDVKGITHVINYD-----MPGNIEDYVHRIGRTGRGGASGTAISFFTE 481

Query: 694 TKS 696
             S
Sbjct: 482 GNS 484


>gi|223041453|ref|ZP_03611656.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor 202]
 gi|223017711|gb|EEF16118.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor 202]
          Length = 404

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++   TK+  E++ +YL     RV  +  ++   +R+ ++     G+ D+LV  ++ 
Sbjct: 254 ERCMIFANTKQKCEEIWQYLLADGHRVGLLTGDIAQKKRLALLDSFTKGELDILVATDVA 313

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAI 701
             GL IPE   V   D         +   +  IGR  R   S   I +A         AI
Sbjct: 314 ARGLHIPEVTHVFNYD-----LPDDREDYVHRIGRTGRAGQSGHSISFACERYAVNLPAI 368

Query: 702 DE 703
           +E
Sbjct: 369 EE 370


>gi|117620545|ref|YP_858124.1| ATP-dependent RNA helicase SrmB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561952|gb|ABK38900.1| ATP-dependent RNA helicase SrmB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 407

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 75/202 (37%), Gaps = 18/202 (8%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
             R  T++ SAT     LE+    I+++ +       P  E R   TQ   + D+     
Sbjct: 178 RYRKHTMLFSATLEGAGLEKFANDILKEPVELHAEP-PRSERRPI-TQWVHLADDAAHKL 235

Query: 580 Q---------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                     +  + ++ V T+    +L+  L    +   ++  E++  +RIE IR    
Sbjct: 236 ALLVHILKDPETQKAIIFVKTRERLAELSGQLQAAGVSCAWIRGEMEQSKRIESIRKFHE 295

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+   L+  ++   G+D+P    V   D             +  IGR  R  N    I  
Sbjct: 296 GEVPFLIATDVAARGIDLPNVSHVINYD-----MPYGADVYVHRIGRTGRAGNRGCAISL 350

Query: 690 ADTITKSIQLAIDE-TTRRREK 710
            +    ++   I+  T  R ++
Sbjct: 351 VEAHDMAMVAKIERYTEERLKR 372


>gi|91206539|sp|Q59LU0|DBP2_CANAL RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 562

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 72/183 (39%), Gaps = 16/183 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E++Q     +   I+ T           +   VE+    ++ + +   
Sbjct: 307 QTLMWSAT-WPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKH 365

Query: 575 INLAA-QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +  A  ++  +IL+   TKR  +++T YL         +H + +  ER  ++ + R GK 
Sbjct: 366 LESALNEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKT 425

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+     V   D        +    +  IGR  R   S   +   T 
Sbjct: 426 SIMVATDVAARGIDVKGITHVINYD-----MPGNIEDYVHRIGRTGRGGASGTAISFFTE 480

Query: 694 TKS 696
             S
Sbjct: 481 GNS 483


>gi|50549245|ref|XP_502093.1| YALI0C21472p [Yarrowia lipolytica]
 gi|74659998|sp|Q6CB69|DED1_YARLI RecName: Full=ATP-dependent RNA helicase DED1
 gi|49647960|emb|CAG82413.1| YALI0C21472p [Yarrowia lipolytica]
          Length = 618

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 77/225 (34%), Gaps = 21/225 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATL--------AEYGFRLPSCMDNRPLRFEEWNCLRP 523
            +D   V++  I  +   +  R   +           G  +P   + + L F        
Sbjct: 308 LIDRGKVSLENIKYLVLDEADRMLDMGFEPQIRAIVQGSGMPDVNERQTLMFSATFPRNI 367

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             +          L+    + V ++   +  +   VE      ++  + D I  AA +GL
Sbjct: 368 QMLARDF------LKDYIFLSVGRVGSTSENITQKVEYVEDGDKISALLD-ILSAAGKGL 420

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
             L+ V TKR A+ L + L   +     +H +    +R   +   R G   +LV   +  
Sbjct: 421 -TLVFVETKRGADYLCDVLQSEDFPATSIHGDRSQRDRERALEMFRDGTTPILVATAVAA 479

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 480 RGLDIPNVTHVVNYD-----LPTDIDDYVHRIGRTGRAGNTGIAT 519


>gi|324993358|gb|EGC25278.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK405]
 gi|327458716|gb|EGF05064.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1057]
          Length = 523

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 79/218 (36%), Gaps = 17/218 (7%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           IR    +  D    +    +Q    ++   TKR  ++LT  L     R   +H ++   +
Sbjct: 219 IRVKENEKFDTMTRLMD-VEQPELSIVFGRTKRRVDELTRGLKISGFRAEGIHGDLDQGK 277

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ ++RD + G  DVLV  ++   GLDI     V   D       +   S +  IGR  R
Sbjct: 278 RLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGR 332

Query: 681 NVNSK-VILYADTITKSIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEV 732
              S   I +           I+  T++R K       +     K  +  + ++    + 
Sbjct: 333 AGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADE 392

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQ 770
                 E        + A+    S ++   ++ SL  Q
Sbjct: 393 SIRSNFEKFGKDARKLVAEF---SPEELAMYILSLTVQ 427


>gi|321398908|emb|CAM65330.2| putative nucleolar RNA helicase II [Leishmania infantum JPCM5]
          Length = 678

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 90/251 (35%), Gaps = 23/251 (9%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG--LVDPPVEIRSARTQVE------D 570
                 T++ SAT   W          ++ I   G   V     I+  R +         
Sbjct: 270 ERPVHQTLLFSATVPEWVHTCSFIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEISSM 329

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D I + +    R L+   TK+   DL+  +    +  + +H +++  +R   ++  R 
Sbjct: 330 LADLIKVYSGAHGRTLVFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKSFRD 387

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            KF VL+  ++   GLD+P   LV       +       + I   GR  R     V +  
Sbjct: 388 NKFSVLIATDVAARGLDLPMVDLVIQCAPPSD-----IDAFIHRAGRTGRAGRKGVCVLL 442

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
               +  +  ++   R  +  ++ +    + P   +E+I++ +     ED A        
Sbjct: 443 YQPRE--EYVVERIERHAK--MKFD----VLPAPTREEILKAVARDAAEDLARVERRATD 494

Query: 751 QQLSLSKKKGK 761
             +  + +  K
Sbjct: 495 LFMDQAAELLK 505


>gi|294497056|ref|YP_003560756.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294346993|gb|ADE67322.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 503

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 93/247 (37%), Gaps = 19/247 (7%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
             T++ SAT   P     E+         ++   +  P +       Q +  +D +    
Sbjct: 176 HQTLLFSATMPTPIRRIAEKFMNEPKVVKVKAKEVTMPNITQYYLEVQEKRKFDILTRLL 235

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L+E L  R    + +H ++   +R+ ++R  + G  DVLV
Sbjct: 236 DMQSPELAIIFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R       +   T  ++ 
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKMGAAMTFVTPRETG 350

Query: 698 Q-LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
           Q   I+ TT+R+   +E      + P ++ E +         +   +      +    L+
Sbjct: 351 QLHNIERTTKRK---MER-----LTPPTLDEAMEGQQRIAADKLTESVTQGNLSYYKQLA 402

Query: 757 KKKGKAH 763
           ++  + H
Sbjct: 403 EELLEEH 409


>gi|257792189|ref|YP_003182795.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|257476086|gb|ACV56406.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
          Length = 508

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 66/185 (35%), Gaps = 22/185 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTG-LVDPPVEIRSART-----QVEDVYDEINLA 578
           T +V ATP   +       I   I +  G L++ P  +  AR       VE     I   
Sbjct: 169 TTIVDATPADRQTLLFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANF 228

Query: 579 AQ-----------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            +              R+++   TK   ED  E L +   R   +HS+    +R   + +
Sbjct: 229 KKPELLQALLEEKGSDRVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDN 288

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            R G+  +LV  ++L  G+D+P+   V   D             +  IGR  R       
Sbjct: 289 FRRGRTSILVATDVLARGIDVPDVDHVINFD-----LPDMPEDYVHRIGRTGRAGEQGFA 343

Query: 688 LYADT 692
           +   T
Sbjct: 344 VSFVT 348


>gi|15227951|ref|NP_181780.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|108861890|sp|Q84W89|RH37_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 37
 gi|4559339|gb|AAD23001.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|330255039|gb|AEC10133.1| DEAD-box ATP-dependent RNA helicase 37 [Arabidopsis thaliana]
          Length = 633

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 71/196 (36%), Gaps = 20/196 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYD 573
              T++ SAT    E+++     +   I          T L+   VE      +   + D
Sbjct: 346 VRQTLLFSAT-FPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMD 404

Query: 574 EINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            ++   + G++      L+ V TKR A+ L  +L         +H +    ER   ++  
Sbjct: 405 LLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAF 464

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           + G+  +LV  ++   GLDIP    V   D             +  IGR  R   S    
Sbjct: 465 KSGRTPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKSGLAT 519

Query: 688 LYADTITKSIQLAIDE 703
            + +    S+   + E
Sbjct: 520 AFFNDGNTSLARPLAE 535


>gi|89094261|ref|ZP_01167203.1| DEAD/DEAH box helicase-like [Oceanospirillum sp. MED92]
 gi|89081516|gb|EAR60746.1| DEAD/DEAH box helicase-like [Oceanospirillum sp. MED92]
          Length = 592

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 9/155 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK    +L E L  R      ++ ++    R   I  L+ G+ D+L+  +++  
Sbjct: 249 MLVFVRTKSATVELAEKLSARGYACEALNGDISQNLRERTIDKLKRGQIDILIATDVVAR 308

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S I  IGR  R       IL+     + +  +I+ 
Sbjct: 309 GLDVERISHVLNYD-----IPYDTESYIHRIGRTGRAGREGEAILFVSPREQRMLKSIER 363

Query: 704 TTRRREKQLEHNKKHNINPQSVKE---KIMEVIDP 735
            TR++ + ++     +IN + V+    +I + ID 
Sbjct: 364 ATRQKIESMQLPSTDDINEKRVQRFVDRISQTIDG 398


>gi|195048170|ref|XP_001992482.1| GH24775 [Drosophila grimshawi]
 gi|193893323|gb|EDV92189.1| GH24775 [Drosophila grimshawi]
          Length = 977

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 23/169 (13%)

Query: 537 LEQCQGIIVEQII-------RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
           +       + QI+       +P  ++    EI  +             AA  G +I++ V
Sbjct: 452 MNLSANHNIRQIVEICNENEKPQRMMRLLKEITPSNN-----------AANAGNKIIIFV 500

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            TK   ED+ + +         +H +    ER  ++RD R GK ++L+  ++   GLD+ 
Sbjct: 501 ETKIKVEDILQIIRNEGYTATSIHGDKSQSERDSVLRDFRNGKSNILIATDVASRGLDVE 560

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           +   V   D     +  S  + +  IGR  R           T   + Q
Sbjct: 561 DLQYVINYD-----YPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQ 604


>gi|332363463|gb|EGJ41246.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK355]
          Length = 523

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 96/262 (36%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVD-QYYIRVKENEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++    +       E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSSFEKFGKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    S ++   ++ SL  Q
Sbjct: 409 AAEF---SPEELAMYILSLTVQ 427


>gi|126308848|ref|XP_001379329.1| PREDICTED: similar to DDX5 protein [Monodelphis domestica]
          Length = 865

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 23/188 (12%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 556 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 605

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 606 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 665

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
             D     +  S    I  IGR AR+  +       T   +I+   D         +   
Sbjct: 666 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPN-NIKQVSD------LISVLRE 713

Query: 716 KKHNINPQ 723
               INP+
Sbjct: 714 ANQAINPK 721


>gi|331234891|ref|XP_003330106.1| ATP-dependent RNA helicase DED1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309309096|gb|EFP85687.1| ATP-dependent RNA helicase DED1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 660

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 13/170 (7%)

Query: 524 TTIVVSAT-PGSWEL---EQCQGIIVEQIIR---PTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   ++   +  +  I   + R    +  +   +E      +   + D ++
Sbjct: 374 QTLMFSATFPRDIQMLAKDFLKDYIFLSVGRVGSTSENITQKIEYVEDADKRSVLLDVLS 433

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                GL  L+ V TKRMA+ L  +L + N     +H +    ER   +   R  +  V+
Sbjct: 434 SMPTGGL-TLVFVETKRMADMLENFLIQSNFAATSIHGDRSQRERERALETFRSSRTPVM 492

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           V   +   GLDIP    V   D             +  IGR  R  N+ +
Sbjct: 493 VATAVAARGLDIPNVTHVVNYD-----LPNDIDDYVHRIGRTGRAGNTGI 537


>gi|308496397|ref|XP_003110386.1| hypothetical protein CRE_05666 [Caenorhabditis remanei]
 gi|308243727|gb|EFO87679.1| hypothetical protein CRE_05666 [Caenorhabditis remanei]
          Length = 562

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 65/162 (40%), Gaps = 14/162 (8%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++         +E    + ++ D+ ++I    +   + ++ V TKR A+
Sbjct: 343 LELAANHNITQVV-------DILEEHGKQAKLMDLLNQIMNQKEC--KTIIFVETKRKAD 393

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +LT  +         +H +    ER  ++++ + GK  +L+  ++   GLD+ +   V  
Sbjct: 394 ELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPILLATDVAARGLDVDDIKFVIN 453

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            D     +  +    +  IGR  R           T T + +
Sbjct: 454 YD-----YPNNSEDYVHRIGRTGRRDKKGTAYTFFTHTNASK 490


>gi|293348206|ref|XP_001059856.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 41-like [Rattus
           norvegicus]
          Length = 1348

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 395 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 448

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 449 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAKKKADVDAIHEYLLLKGVEAV 507

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 508 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 562

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 563 YVHRIGRTGRSGNTGIATTF------INKACDES 590


>gi|240949168|ref|ZP_04753515.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor NM305]
 gi|240296471|gb|EER47107.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor NM305]
          Length = 404

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++   TK+  E++ +YL     RV  +  ++   +R+ ++     G+ D+LV  ++ 
Sbjct: 254 ERCMIFANTKQKCEEIWQYLLADGHRVGLLTGDIAQKKRLALLDSFTKGELDILVATDVA 313

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAI 701
             GL IPE   V   D         +   +  IGR  R   S   I +A         AI
Sbjct: 314 ARGLHIPEVTHVFNYD-----LPDDREDYVHRIGRTGRAGQSGHSISFACERYAVNLPAI 368

Query: 702 DE 703
           +E
Sbjct: 369 EE 370


>gi|197692465|dbj|BAG70196.1| ATP-dependent RNA helicase DDX5 [Homo sapiens]
          Length = 614

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 72/188 (38%), Gaps = 23/188 (12%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 354

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 414

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
             D     +  S    I  IGR AR+  +    Y      +I+   D  +  RE      
Sbjct: 415 NYD-----YPNSSEDYIHRIGRTARSTKTGTA-YTFFTPNNIKQVSDLISVLREASQA-- 466

Query: 716 KKHNINPQ 723
               INP+
Sbjct: 467 ----INPK 470


>gi|28393424|gb|AAO42134.1| putative DEAD/DEAH box RNA helicase [Arabidopsis thaliana]
          Length = 633

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 71/196 (36%), Gaps = 20/196 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYD 573
              T++ SAT    E+++     +   I          T L+   VE      +   + D
Sbjct: 346 VRQTLLFSAT-FPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMD 404

Query: 574 EINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            ++   + G++      L+ V TKR A+ L  +L         +H +    ER   ++  
Sbjct: 405 LLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAF 464

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           + G+  +LV  ++   GLDIP    V   D             +  IGR  R   S    
Sbjct: 465 KSGRTPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKSGLAT 519

Query: 688 LYADTITKSIQLAIDE 703
            + +    S+   + E
Sbjct: 520 AFFNDGNTSLARPLAE 535


>gi|6808033|emb|CAB70746.1| hypothetical protein [Homo sapiens]
          Length = 240

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 11/120 (9%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 53  VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 112

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +          I  A DE+
Sbjct: 113 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGIATTF------INKACDES 161


>gi|270296763|ref|ZP_06202962.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272750|gb|EFA18613.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 429

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 79/200 (39%), Gaps = 28/200 (14%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           ++      TI+ SAT                 E++       E+I++   +         
Sbjct: 175 KFLPKERQTIMFSATMPAKIQQLAGNILNNPAEVKLAVSKPAEKIVQAAYVC-------- 226

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q +        A +   R+++   +K   +++T+ L +  + V  MHS+++  +R E
Sbjct: 227 YENQ-KLGIIRSLFAEETPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREE 285

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++ + + G+ ++LV  +++  G+DI +  LV   D             +  IGR AR  N
Sbjct: 286 VMYEFKAGRINILVATDIVARGIDIDDIRLVINYDV-----PHDSEDYVHRIGRTARANN 340

Query: 684 SKV-ILYADTITKSIQLAID 702
             V I +     +     I+
Sbjct: 341 DGVAITFVSEKEQGSFKNIE 360


>gi|254461770|ref|ZP_05075186.1| ATP-dependent RNA helicase DeaD [Rhodobacterales bacterium
           HTCC2083]
 gi|206678359|gb|EDZ42846.1| ATP-dependent RNA helicase DeaD [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 450

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 67/189 (35%), Gaps = 11/189 (5%)

Query: 524 TTIVVSAT-PGSW-ELEQCQGIIVEQI-IRPTGLVDPPVE--IRSARTQVEDVYDEINLA 578
            T++ SAT P    E+        ++I + P G     V   +       +       L 
Sbjct: 185 QTMLFSATMPKLMNEIANTYLKSPKRIQVSPPGKAADKVTQVVHFIAKTEKQSLLIELLG 244

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A +  R L+   TK   E L + L  R      +H      +R   +   + G+  VLV 
Sbjct: 245 AHKDERALVFGRTKHGCEKLMKQLVARGFAATSIHGNKSQGQRERALAAFKAGEMKVLVA 304

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDIP+   V   +           + +  IGR AR       I +       +
Sbjct: 305 TDVAARGLDIPDVRHVYNYE-----LPNVPDAYVHRIGRTARAGKDGAAIAFCAPDEMDL 359

Query: 698 QLAIDETTR 706
              I++T +
Sbjct: 360 LKDIEKTMK 368


>gi|39935543|ref|NP_947819.1| ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009]
 gi|192291134|ref|YP_001991739.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|39649396|emb|CAE27918.1| possible ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
 gi|192284883|gb|ACF01264.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 472

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 60/190 (31%), Gaps = 17/190 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE--QIIRPTGLVDPPVEI--------RSARTQVEDVYD 573
            T+  +AT    E+ +     +   + I  +      V +        R    + E +  
Sbjct: 179 QTLFFTAT-MPTEIRRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRR 237

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I  A       ++    KR    L + L      V  +H ++    R   +   R G  
Sbjct: 238 LIRGATDLK-NAIIFCNRKREVALLAKSLQRHGFSVGALHGDMDQTARTAALEAFRKGDL 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIPE   V   D             +  IGR  R   +   +     
Sbjct: 297 PILVASDVAARGLDIPEVSHVFNFDV-----PHHPDDYVHRIGRTGRAGRTGTAVTIVAP 351

Query: 694 TKSIQLAIDE 703
           +    +A  E
Sbjct: 352 SDQKSMAAVE 361


>gi|322496407|emb|CBZ31477.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 678

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 90/251 (35%), Gaps = 23/251 (9%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG--LVDPPVEIRSARTQVE------D 570
                 T++ SAT   W          ++ I   G   V     I+  R +         
Sbjct: 270 ERPVHQTLLFSATVPEWVHTCSFIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEISSM 329

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D I + +    R L+   TK+   DL+  +    +  + +H +++  +R   ++  R 
Sbjct: 330 LADLIKVYSGAHGRTLVFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKSFRD 387

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            KF VL+  ++   GLD+P   LV       +       + I   GR  R     V +  
Sbjct: 388 NKFSVLIATDVAARGLDLPMVDLVIQCAPPSD-----IDAFIHRAGRTGRAGRKGVCVLL 442

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
               +  +  ++   R  +  ++ +    + P   +E+I++ +     ED A        
Sbjct: 443 YQPRE--EYVVERIERHAK--MKFD----VLPAPTREEILKAVARDAAEDLARVERRATD 494

Query: 751 QQLSLSKKKGK 761
             +  + +  K
Sbjct: 495 LFMDQAAELLK 505


>gi|299133793|ref|ZP_07026987.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
 gi|298591629|gb|EFI51830.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
          Length = 472

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVEDVYDEINLAAQQG 582
            T+  +AT    E+ +     +   ++        VE+ + A T V     +I+   +  
Sbjct: 179 QTLFFTAT-MPAEIRRITETFLHNPVK--------VEVSKPASTAVTVTQFQISTGKESH 229

Query: 583 LR----------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            +                 ++    KR    L + L +       +H ++    R+  + 
Sbjct: 230 EKRELLRQLLRDAKDLKNAIIFCNRKREVAILHKSLQKHGFGAAALHGDMDQSARMAALE 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK- 685
             R G+  +LV  ++   GLDIPE   V   D             +  IGR  R      
Sbjct: 290 QFRKGELPLLVASDVAARGLDIPEVSHVFNFDV-----PHHPDDYVHRIGRTGRAGRLGT 344

Query: 686 VILYADTITKSIQLAID 702
            I     + +   LAI+
Sbjct: 345 AISIVSPLDQKSILAIE 361


>gi|206564651|ref|YP_002235414.1| putative ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia
           J2315]
 gi|198040691|emb|CAR56677.1| putative ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia
           J2315]
          Length = 484

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 88/264 (33%), Gaps = 25/264 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLRFEEWNCLRPTTIVVS 529
            +D +     Q   +          + + GF   L +     P +          T++ S
Sbjct: 135 LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAK--------RQTLLFS 186

Query: 530 ATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLR 584
           AT          GI+   +   +         ++  + +   + +       +A  +   
Sbjct: 187 ATFSDEIRTMAAGILRNPVDISVSAPNATASKIKQWVVTVDKRNKPGLFMHLVAQNKWEH 246

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V T+   + L   L +    V  +H +     R+  +   + G+  +LV  ++   
Sbjct: 247 ALVFVKTRNGVDYLAVMLEKAGYAVDTIHGDKPQPARLRALERFKAGEVQMLVATDVAAR 306

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           GLDI +  LV  +D             +  IGR  R   S V +            AI+ 
Sbjct: 307 GLDIDDLPLVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEA 361

Query: 704 TTR---RREKQLEHNKKHNINPQS 724
             R   RRE++     +H   P++
Sbjct: 362 LIRQTLRREEEPGFEAEHR-VPET 384


>gi|156369954|ref|XP_001628238.1| predicted protein [Nematostella vectensis]
 gi|156215209|gb|EDO36175.1| predicted protein [Nematostella vectensis]
          Length = 361

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII----------RPTGLVDPPVEIRSARTQVEDVYD 573
            T++ SAT    E++   G  ++                 +    + +  +  +  D   
Sbjct: 144 QTLMFSAT-FPDEIQHLAGSFLKPDYLFLAVGRVGGTNLDITQHVITVNGSEKR--DKLH 200

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           EI  A     R L+ V  KR+A+ L  +L + N     + S+    ER   +RD R G+ 
Sbjct: 201 EILSATGTD-RTLVFVELKRVADFLAAWLSQNNFPTTSISSDRCQSEREAALRDFRDGRA 259

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           ++LV  ++   GLDIP    V   D       +     +  +GR  R  N         +
Sbjct: 260 NILVATSVAARGLDIPNVKHVINYD-----LPQDIEEYVHRVGRTGRIGNEGKATAFYEV 314

Query: 694 TKSIQLA 700
            +  +LA
Sbjct: 315 GRDDRLA 321


>gi|113197619|gb|AAI21228.1| ddx52 protein [Xenopus (Silurana) tropicalis]
          Length = 595

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R  +I+  R GK
Sbjct: 409 MRDLVKKGFTPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNVIQSFREGK 468

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     +V   D     F  S    I  IGR  R  +  K + +  
Sbjct: 469 IWVLICTALLARGIDFKGVNMVINYD-----FPTSAVEYIHRIGRTGRAGHRGKAVSFFT 523

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 524 EDDKPMLRSV 533


>gi|77917943|ref|YP_355758.1| cold-shock inducible ATP-independent RNA helicase [Pelobacter
           carbinolicus DSM 2380]
 gi|77544026|gb|ABA87588.1| ATP-dependent RNA helicase CsdA [Pelobacter carbinolicus DSM 2380]
          Length = 583

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 89/225 (39%), Gaps = 14/225 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            T + SAT  +  L+  +  + E +   I+        +  R  + +     D +    +
Sbjct: 183 QTALFSATMPNEVLKVARRHLREPVEVRIKAKTSTVETISQRFWQVRGVRKLDALTRILE 242

Query: 581 QGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                 +++ V TK    +L E L  R      ++ ++    R + +  L+ G  D++V 
Sbjct: 243 AEDIDAMIVFVRTKIATVELAEKLEARGFSSAALNGDMTQALREKTVERLKSGSLDIVVA 302

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLD+     V   D           S +  IGR  R       IL+     + +
Sbjct: 303 TDVAARGLDVQRISHVVNYD-----IPYDTESYVHRIGRTGRAGREGSAILFVAPRERRM 357

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSV---KEKIMEVIDPILLE 739
             AI++ TR++   ++   + +I  + V   KE+I++ +    LE
Sbjct: 358 LAAIEQATRQKIAPMKLPSRQDITNRRVALFKEQILDAMQSQDLE 402


>gi|226942516|ref|YP_002797589.1| DEAD box family ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
 gi|226717443|gb|ACO76614.1| ATP-dependent RNA helicase, DEAD box family [Azotobacter vinelandii
           DJ]
          Length = 557

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGII--VEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +   ++ SAT  +  +     ++   E+I + P       +E R  R         +   
Sbjct: 184 KRQNLLFSATFSADIVNLTNKLLHDPERIEVTPPNTTVERIEQRVFRLPAGHKRALLAHL 243

Query: 579 AQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             QG   ++L+   TK  A  L EYL +  +    +H       R + + D + G   +L
Sbjct: 244 VTQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKSGTIRIL 303

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI +   V   +         +   +  IGR  R   S   I       +
Sbjct: 304 VATDIAARGLDIDQLPHVVNFE-----LPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEE 358

Query: 696 SIQLAIDETTRR 707
            +  +I+  TR+
Sbjct: 359 KLLKSIERMTRQ 370


>gi|90581476|ref|ZP_01237270.1| ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90437337|gb|EAS62534.1| ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 437

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 79/223 (35%), Gaps = 26/223 (11%)

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           R+P+  +   L F         T+       ++E       +V +  + TG      E+ 
Sbjct: 185 RMPAPSERLSLLFSA-------TLSYRVKELAFEHMNSPESVVVEPEQKTGHRIQE-ELF 236

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
               Q +    +  +  +   R ++   TK   ED+  +L     RV  +  +V   +R 
Sbjct: 237 YPSNQEKMRLLQTLIEEEWPERAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRE 296

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
            I+     G  D+LV  ++   GL IP    V   D             +  IGR  R  
Sbjct: 297 RILDQFTKGDVDILVATDVAARGLHIPAVTHVFNYD-----LPDDAEDYVHRIGRTGRAG 351

Query: 683 -NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
            +   I +A       + AI+ T       +E   +H I PQS
Sbjct: 352 LSGHSISFACE-----EYAINLTA------IETYIEHGI-PQS 382


>gi|46581710|ref|YP_012518.1| DEAD-box ATP dependent DNA helicase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46451133|gb|AAS97778.1| ATP-dependent RNA helicase, DEAD/DEAH family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235346|gb|ADP88200.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
          Length = 532

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 82/224 (36%), Gaps = 19/224 (8%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D  +    Q+  +          + + GFR    ++       EW      +   SAT
Sbjct: 135 ILDHINRGTLQLGVVRMTVLDEADEMLDMGFR--EDIERILSEMPEWV----QSAFFSAT 188

Query: 532 PGSWELEQCQGIIVE-QIIRPTGLVDPPV-------EIRSARTQVEDVYDEINLAAQQGL 583
                LE  +  + E +++R T              E+R  R +V+ V    +    +  
Sbjct: 189 MPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFR-RVDAVCRIFDAYIPR-- 245

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TK+  ++L   L +R I    +H ++   +R  ++   R G   VLV  ++  
Sbjct: 246 KAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVATDVAA 305

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            GLD+ +   V   D   +    +    I   GRA R   +   
Sbjct: 306 RGLDVDDVDTVINFDLPND--PETYVHRIGRTGRAGRTGRAFSF 347


>gi|119773652|ref|YP_926392.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
 gi|119766152|gb|ABL98722.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
          Length = 637

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 73/223 (32%), Gaps = 20/223 (8%)

Query: 559 VEIRSARTQVEDVYDEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           +E R  +    +  + +      +    I++ V T+    +L E L  R      +H ++
Sbjct: 220 IEQRFVQVSQHNKLEALVRVLEVENTEGIIIFVRTRNSCMELAEKLEARGYAASPLHGDM 279

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
               R   +  L+ GK D+L+  ++   GLD+   G V   D           + +  IG
Sbjct: 280 NQQARERAVDQLKSGKLDILIATDVAARGLDVERIGHVVNYD-----IPYDTEAYVHRIG 334

Query: 677 RAARNVNSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           R  R   +   IL+  +    +   I+  T  R           I+P  +      V + 
Sbjct: 335 RTGRAGRTGMAILFVTSREMRMLRTIERATNSR-----------ISPMKIPSP-ESVAER 382

Query: 736 ILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
            L          +  + L   K       + L       A  L
Sbjct: 383 RLSRLGEQVADILANEHLDFMKGAVAQLCQQLEVDTEQLAAAL 425


>gi|323483414|ref|ZP_08088802.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
           WAL-14163]
 gi|323403268|gb|EGA95578.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
           WAL-14163]
          Length = 552

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 96/248 (38%), Gaps = 36/248 (14%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT  P   E+ +      E +      +    +     E++  +T+VE +   +
Sbjct: 180 QTVMFSATMPPAIAEIAKKFQKDPEIVKVVKKELTVPKVTQYYYEVKP-KTKVEVMCRLL 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++   +    ++   TKR  +DL + L  R      +H ++K ++R  ++   R G+ D+
Sbjct: 239 DMYDPK--LSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   G+D+ +   V   D       +     +  IGR  R               
Sbjct: 297 LIATDVAARGIDVDDVEAVFNYD-----IPQDDEYYVHRIGRTGRAGREGKAFSLV---- 347

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSV----------KEKIMEVIDPILLEDAATTN 745
                  E  + RE Q     K  I PQ +           EKIM+ ++ I+ +      
Sbjct: 348 ----VGREVYKLREIQ--RYCKTKIIPQPIPSLNDVTSIKVEKIMDSVEEIIRDSDLDKI 401

Query: 746 ISIDAQQL 753
           I+I  +++
Sbjct: 402 INIVEKRV 409


>gi|261333672|emb|CBH16667.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 616

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 68/193 (35%), Gaps = 15/193 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVEDVYDEINLA 578
            T++ SAT         +  +        G V    E     +R      +       L 
Sbjct: 307 QTLLYSATFPVEIQRLAREFMCRHSFLQVGRVGSTTENITQDVRWIEDPDKRQALLTLLR 366

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             +G  +L+ V  KR A+ L  +L    +    +H +    ER E +R  + G   VLV 
Sbjct: 367 ENEGKLVLVFVEKKRDADYLERFLRNSELACVSIHGDRVQREREEALRLFKSGACQVLVA 426

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD-----TI 693
            ++   GLDIP  G+V   D        +    +  IGR  R     V +         I
Sbjct: 427 TDVASRGLDIPNVGVVIQYD-----MPSNIDDYVHRIGRTGRAGKVGVAISFFNEKNRNI 481

Query: 694 TKSIQLAIDETTR 706
              +   ++ET +
Sbjct: 482 VDDLIPLLNETNQ 494


>gi|241760530|ref|ZP_04758623.1| dead/deah box helicase [Neisseria flavescens SK114]
 gi|241319034|gb|EER55536.1| dead/deah box helicase [Neisseria flavescens SK114]
          Length = 464

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 72/187 (38%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +    +   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKDPETI--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|209880030|ref|XP_002141455.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209557061|gb|EEA07106.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 486

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 75/190 (39%), Gaps = 21/190 (11%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   TK+  + LT  L      V  +HS +    R+  +   R     +LV   +   G
Sbjct: 309 IIFTATKQQCQLLTSTLEFMGYPVTGLHSLMNQKRRLASLGKFRNHTCKLLVATGVASRG 368

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LDIP+ G V   D     F RS    I  IGR  R     V+L   T      +   E  
Sbjct: 369 LDIPDVGFVINFD-----FPRSFEDYIHRIGRTGRAGKEGVVLSFITQADVPYVKYTENR 423

Query: 706 RRREKQLEH-NKKH--NINP--QSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG 760
              E +L + N+     + P   +V++K + ++D I   D           ++  +KK+ 
Sbjct: 424 MNTELELLNLNEDEVLELMPFVTTVQQKALLLLDEIGFND-----------KVKETKKRK 472

Query: 761 KAHLKSLRKQ 770
              +K+  KQ
Sbjct: 473 LKVIKTKNKQ 482


>gi|168068661|ref|XP_001786160.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662029|gb|EDQ49028.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 377

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 40/241 (16%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIR--------PTGLVDPPVEIRSARTQVEDVY 572
            +  T++ SAT    E+E      + + +R        PT  V   +E  + + +++ + 
Sbjct: 108 KKHQTLLFSAT-MPEEIEALAQEYLNKPVRVKVGRVSSPTANVTQNLEKITEKEKIDSLL 166

Query: 573 DEINLAAQQGLR-------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
             +     Q L         ++ V  K   +++T+ L E+ ++   +H      ER   +
Sbjct: 167 ALLVDEHSQSLDSNQPPPLTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAAL 226

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RD R G  ++LV  ++   GLD+     V  LD  K     +    +  IGR  R   S 
Sbjct: 227 RDFRKGTTNILVATDVASRGLDVTGVAHVINLDLPK-----TMEDYVHRIGRTGRAGASG 281

Query: 686 VILYADTITK-----SIQLAIDETT-------------RRREK-QLEHNKKHNINPQSVK 726
                 T         I+ AI E               RR+E+ Q    ++  + P  V 
Sbjct: 282 RATSFYTERDVFLVAQIRRAITEAESGNTMAFATGKAARRKEREQAAAFREGRMTPLGVA 341

Query: 727 E 727
           +
Sbjct: 342 Q 342


>gi|149635102|ref|XP_001510775.1| PREDICTED: similar to DDX5 protein [Ornithorhynchus anatinus]
          Length = 682

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 23/188 (12%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 373 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 422

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 423 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 482

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
             D     +  S    I  IGR AR+  +       T   +I+   D         +   
Sbjct: 483 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPN-NIKQVSD------LISVLRE 530

Query: 716 KKHNINPQ 723
               INP+
Sbjct: 531 ANQAINPK 538


>gi|120601130|ref|YP_965530.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           vulgaris DP4]
 gi|120561359|gb|ABM27103.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
          Length = 532

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 82/224 (36%), Gaps = 19/224 (8%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D  +    Q+  +          + + GFR    ++       EW      +   SAT
Sbjct: 135 ILDHINRGTLQLGVVRMTVLDEADEMLDMGFR--EDIERILSEMPEWV----QSAFFSAT 188

Query: 532 PGSWELEQCQGIIVE-QIIRPTGLVDPPV-------EIRSARTQVEDVYDEINLAAQQGL 583
                LE  +  + E +++R T              E+R  R +V+ V    +    +  
Sbjct: 189 MPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFR-RVDAVCRIFDAYIPR-- 245

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TK+  ++L   L +R I    +H ++   +R  ++   R G   VLV  ++  
Sbjct: 246 KAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVATDVAA 305

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            GLD+ +   V   D   +    +    I   GRA R   +   
Sbjct: 306 RGLDVDDVDTVINFDLPND--PETYVHRIGRTGRAGRTGQAFSF 347


>gi|68444623|ref|XP_684923.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 isoform 1
           [Danio rerio]
          Length = 484

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 65/181 (35%), Gaps = 15/181 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
              + S     +E+   + + ++ + +    V    ++           + +    Q   
Sbjct: 286 QKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQ 337

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
            I +   + +  E L + + +      Y+H++++   R  +  D R G    LV  +L  
Sbjct: 338 SI-IFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFT 396

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAID 702
            G+DI    +V   D  K G      + +  IGR+ R  +  + +   T         I+
Sbjct: 397 RGIDIQAVNVVINFDFPKLG-----ETYLHRIGRSGRFGHLGLAINLITYDDRFNLKGIE 451

Query: 703 E 703
           E
Sbjct: 452 E 452


>gi|148263694|ref|YP_001230400.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146397194|gb|ABQ25827.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 447

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 69/204 (33%), Gaps = 15/204 (7%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI----RSARTQVEDVYDEIN 576
            +  T++ SAT           ++ + +    G   PPV +          ++       
Sbjct: 174 KQRQTLLFSATMPDEIRRLAHEVLNDPVTVQVGNTAPPVTVSHALYPVEQHLKTPLLLEL 233

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L       +L+   TK  A+ L E L +   R   +   +    R   +   R G F +L
Sbjct: 234 LRHTDTESVLVFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQIL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   G+D+ +   V   D        +  + +  IGR  R   S        +   
Sbjct: 294 VATDIAARGIDVSQISHVVNYD-----IPDTAEAYVHRIGRTGRAARSGDAFTLVTSEDT 348

Query: 696 SIQLAIDET-----TRRREKQLEH 714
           ++  AI+        RR  +  ++
Sbjct: 349 AMVRAIERALKSSLERRTVEGFDY 372


>gi|291006385|ref|ZP_06564358.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 467

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 93/261 (35%), Gaps = 40/261 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +          ++ H+ + ++  +   +        + GF LP          E
Sbjct: 120 TPGRLLD--------LAEQQHLVLGKVRALVLDEADEM---LDLGF-LPD--------IE 159

Query: 517 EWNCLRP---TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
               + P    T++ SAT PG         L Q   I  EQ     G +    +    R 
Sbjct: 160 RILHMVPEQRQTMLFSATMPGPIITLARTFLRQPTHIRAEQADA--GAIHERTKQFVYRA 217

Query: 567 QVEDVYDEINLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
              D  + I  A Q   R   ++   TKR A+ L++ L ER      +H ++    R + 
Sbjct: 218 HAMDKTELIARAMQANGRGLSMIFTRTKRTAQKLSDELTERGFAAAAVHGDLGQGAREQA 277

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R  R GK D+LV  ++   G+D+     V  L          + + +  IGR  R    
Sbjct: 278 LRAFRSGKVDILVATDVAARGIDVGGVTHVVNL-----QCPDDEKTYVHRIGRTGRAGRE 332

Query: 685 KV-ILYADTITKSIQLAIDET 704
            V I   D   +     I +T
Sbjct: 333 GVAITLVDWDEEPRWKMISDT 353


>gi|188529679|gb|ACD62526.1| Vasa short form [Silurus meridionalis]
          Length = 641

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 6/115 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R G+  VLV  ++ 
Sbjct: 456 ERTMVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALGDFRTGQCPVLVATSVA 515

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             GLDI +   V   D  K          +  IGR  R  N+   + + D  + +
Sbjct: 516 ARGLDIEQVQNVINFDLPKY-----IDEYVHRIGRTGRCGNTGRAVSFFDPESDT 565


>gi|188529677|gb|ACD62525.1| Vasa [Silurus meridionalis]
          Length = 662

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 6/115 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++ V TKR A+ +  +L +  +    +H + +  ER + + D R G+  VLV  ++ 
Sbjct: 477 ERTMVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALGDFRTGQCPVLVATSVA 536

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             GLDI +   V   D  K          +  IGR  R  N+   + + D  + +
Sbjct: 537 ARGLDIEQVQNVINFDLPKY-----IDEYVHRIGRTGRCGNTGRAVSFFDPESDT 586


>gi|156057183|ref|XP_001594515.1| hypothetical protein SS1G_04322 [Sclerotinia sclerotiorum 1980]
 gi|154702108|gb|EDO01847.1| hypothetical protein SS1G_04322 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 638

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+++ +YL+  ++    +HS+    ER + IR  R G+  +L+   +  
Sbjct: 422 RTIIFVNTKRTADEIDDYLFNNDLPCTSIHSDRTQREREDSIRAFRNGRMPILIATGVSA 481

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA-----DTITKSIQ 698
            GLD+     V   D   +            IGR  R  N  +         + I +++ 
Sbjct: 482 RGLDVHNIMHVINFDLPSQAHG-GIEEYTHRIGRTGRIGNRGLASSFYNDRNEDIAEALV 540

Query: 699 LAIDET 704
             + ET
Sbjct: 541 KTLLET 546


>gi|50550293|ref|XP_502619.1| YALI0D09449p [Yarrowia lipolytica]
 gi|74659944|sp|Q6C9P3|DBP3_YARLI RecName: Full=ATP-dependent RNA helicase DBP3
 gi|49648487|emb|CAG80807.1| YALI0D09449p [Yarrowia lipolytica]
          Length = 532

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 14/171 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIV---------EQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT      +  +G +             +     +   VE+   R +   + D 
Sbjct: 301 QTVMFSATWPPEVRKLAEGFMKTPTKVMIGERDELAANKRITQSVEVLDPRAKEGRLLDL 360

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +   A    +IL+  L K+ A  +   L  R   V  +H ++   +R + + + + G+ +
Sbjct: 361 LRQYANDDFKILIFALYKKEATRVENTLTRRGYGVAAIHGDLSQQQRTKALDEFKKGEKN 420

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +L+  ++   GLDIP   LV  L      F  +    +  IGR  R   + 
Sbjct: 421 ILLATDVAARGLDIPNVKLVINL-----TFPLTVEDYVHRIGRTGRAGKTG 466


>gi|332072754|gb|EGI83235.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17545]
          Length = 524

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 97/267 (36%), Gaps = 35/267 (13%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVD-QYYIRVKEQEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVK-----------EKI-MEVIDPILLEDAAT 743
                I+  T++R K         + P SV+           +KI  +  D  +  +   
Sbjct: 349 GYLQIIENLTKKRMK--------GLKPASVEESFQSKKQVALKKIERDFADETIRANFEK 400

Query: 744 TNISIDAQQLSLSKKKGKAHLKSLRKQ 770
                       + ++   ++ SL  Q
Sbjct: 401 FGKDARKLAAEFTPEELAMYILSLTVQ 427


>gi|156064101|ref|XP_001597972.1| hypothetical protein SS1G_00058 [Sclerotinia sclerotiorum 1980]
 gi|160380631|sp|A7E436|DBP8_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp8
 gi|154690920|gb|EDN90658.1| hypothetical protein SS1G_00058 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 540

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 11/203 (5%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
               +   ++  +         I++       A+ LT  L     RV  +HS++   +RI
Sbjct: 347 PVTHREHYLHMFLLTEKNLPKSIVIFCNRTATADYLTHLLRLLEHRVTALHSKLPQRQRI 406

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           + +   R     +LV  ++   GLDIPE GLV   D  ++         I  +GR AR  
Sbjct: 407 DNLGRFRASAARILVATDVAARGLDIPEVGLVINYDVPRD-----PDDYIHRVGRTARAG 461

Query: 683 NSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
                + +       + LAI+   +R  +Q+E   +  +N ++    I E +  +  +  
Sbjct: 462 RKGEAVTFVGQRDVQLILAIE---KRVGRQMEAWTEEGVNLET--RVIRESLKLVGEKKR 516

Query: 742 ATTNISIDAQQLSLSKKKGKAHL 764
                  + +++   +K+G   L
Sbjct: 517 EAMLEIEEGREVGGKRKRGMKKL 539


>gi|145613028|ref|XP_362776.2| hypothetical protein MGG_08272 [Magnaporthe oryzae 70-15]
 gi|145020089|gb|EDK04317.1| hypothetical protein MGG_08272 [Magnaporthe oryzae 70-15]
          Length = 584

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 8/140 (5%)

Query: 549 IRPTGLVDPPVEI-RSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           ++    +   VE+       T++  +  E      +  R+L+  L K+ A  +   L  +
Sbjct: 384 LQANSRISQRVEVVNPWEKETRLVQLLKEAQAGKNKNDRVLVFCLYKKEAVRVENNLQRK 443

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            IRV  +H ++K  +R   +   + GK  VLV  ++   GLDIPE  LV  +      F 
Sbjct: 444 GIRVASIHGDLKQEQRTASLEAFKSGKTTVLVATDVAARGLDIPEVKLVINV-----TFP 498

Query: 666 RSKTSLIQTIGRAARNVNSK 685
            +    +  IGR  R     
Sbjct: 499 LTIEDYVHRIGRTGRAGKQG 518


>gi|209877927|ref|XP_002140405.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556011|gb|EEA06056.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 680

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 19/193 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSA---RTQVEDVYDEIN 576
            T++ SAT    E++Q     +   I  T    G     +  R           +  ++ 
Sbjct: 393 QTVMFSAT-FPREIQQLAKDFLHSYIFLTVGRVGATSGSIVQRVVYAEEDHKPRLLVKLL 451

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +   +GL  ++ V  KR A+ + ++L ++N     +H +    ER   +R  R G+  +L
Sbjct: 452 MEQGEGL-TVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALRLFRSGQRPIL 510

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD----- 691
           V  ++   GLDIP    V  LD        +    +  IGR  R  N+ +          
Sbjct: 511 VATDVAARGLDIPNITHVINLD-----MPCNIDDYVHRIGRTGRAGNTGLATSFVNENNK 565

Query: 692 TITKSIQLAIDET 704
            I + +  A++E+
Sbjct: 566 PILRDLLAALEES 578


>gi|145478351|ref|XP_001425198.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392267|emb|CAK57800.1| unnamed protein product [Paramecium tetraurelia]
          Length = 472

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 5/130 (3%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TK   + L  YL +  +R + +H + +  ER  ++   + G   VLV  ++  
Sbjct: 315 KILIFCQTKMKCDQLQLYLIQEGMRCKSLHGDKRQSERDFVMNSFKRGDTTVLVATDVAS 374

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLDI +   V   D  K          +  IGR  R     V +      +  +LA D 
Sbjct: 375 RGLDIKDIEFVINFDMPKL-----IEDYVHRIGRTGRAGAQGVSISLFDSYEDAKLAGDL 429

Query: 704 TTRRREKQLE 713
               RE Q E
Sbjct: 430 VGVLRESQNE 439


>gi|189425337|ref|YP_001952514.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189421596|gb|ACD95994.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 452

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 70/191 (36%), Gaps = 11/191 (5%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLA 578
             ++ SAT     +E     +    +  + P  +    VE  +     + +       L 
Sbjct: 186 QNLMFSATLNQRVMELSYEFMNVPQKVSVTPEKMTAERVEQVLYHVSNKEKFPLLLGLLR 245

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +   R +L V TKR AE L + L       R +  +V   +R+ I+   + G+  +L+ 
Sbjct: 246 REGMARTMLFVNTKREAERLQDRLNANEFPCRVISGDVDQRKRMNILEQFKRGELAILIA 305

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSI 697
            ++   GL I     V   D       +     +  IGR AR     K I  AD      
Sbjct: 306 TDVASRGLHIDGVSHVINYD-----LPQDAEDYVHRIGRTARAGAEGKAISLADEDGAFY 360

Query: 698 QLAIDETTRRR 708
             AI+E  R +
Sbjct: 361 IEAIEEYIRHK 371


>gi|88802750|ref|ZP_01118277.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88781608|gb|EAR12786.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 411

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 82/230 (35%), Gaps = 34/230 (14%)

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           + + GF       N   + E +   +  T++ SAT     +E  + +I   ++       
Sbjct: 161 MLDMGFI------NDIKKIERFCPKQKQTLLFSATMPEKIVELAKKVIKSPVV------- 207

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGL--------------RILLTVLTKRMAEDLTEYL 602
             VEI    T  +++   +    ++                +I++   TK   + L E L
Sbjct: 208 --VEINPEETTAKNIGQLLYYLPKKNKTDLCLNLLKNTINGKIIIFRRTKFGVDKLEESL 265

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +   +V  +H +     R + I D +     +L+  ++   G+DI     +   D    
Sbjct: 266 TKNGYKVASIHGDKTQGIRNKAIEDFKNKTAHILIATDVASRGIDITNVDAIINFD---- 321

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
                  + I  IGR  R   S +     +  ++  + + ET   R  ++
Sbjct: 322 -IPNVPETYIHRIGRTGRAGKSGIAFSFCSPDENAYIKLIETLIERPIKV 370


>gi|154300880|ref|XP_001550854.1| hypothetical protein BC1G_10578 [Botryotinia fuckeliana B05.10]
 gi|160380613|sp|A6SCT6|DBP3_BOTFB RecName: Full=ATP-dependent RNA helicase dbp3
 gi|150856326|gb|EDN31518.1| hypothetical protein BC1G_10578 [Botryotinia fuckeliana B05.10]
          Length = 592

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 72/191 (37%), Gaps = 19/191 (9%)

Query: 522 RPTTIVVSAT--PGSWELEQCQGIIVEQI---------IRPTGLVDPPVEI---RSARTQ 567
           +  T++ +AT      EL         +I         +R    +   VE+   R    +
Sbjct: 354 KRQTLMFTATWPESVRELAATFMTSPVKIAIGDNPTGDLRANSRIVQKVEVVEPRDKEYR 413

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +  +  +    +Q+  RIL+  L K+ A  +  ++ ++  RV  +H ++   +R   +  
Sbjct: 414 LMQLLKQYQSGSQKDDRILVFCLYKKEATRVESFIRQKGFRVAGIHGDLSQEQRTRSLEA 473

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + G   VLV  ++   GLDIP   LV         F  +    +  IGR  R     + 
Sbjct: 474 FKSGNTPVLVATDVAARGLDIPAVKLVINC-----TFPLTVEDYVHRIGRTGRAGKDGLA 528

Query: 688 LYADTITKSIQ 698
           +   T     Q
Sbjct: 529 ITLFTEHDKAQ 539


>gi|148709265|gb|EDL41211.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Mus musculus]
          Length = 633

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 359 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 412

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 413 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 471

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 472 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 526

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 527 YVHRIGRTGRSGNTGIATTF------INKACDES 554


>gi|154332025|ref|XP_001561829.1| nucleolar RNA helicase II [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134059150|emb|CAM36848.1| putative nucleolar RNA helicase II [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 689

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 89/251 (35%), Gaps = 23/251 (9%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG--LVDPPVEIRSARTQVE------D 570
                 T++ SAT   W          ++ I   G   V     I+  R +         
Sbjct: 270 EKTVHQTLLFSATVPEWVHTCSFIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEISSM 329

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D I + +    R L+   TK+   DL+  +    +  + +H +++  +R   ++  R 
Sbjct: 330 LADLIKVYSGAHGRTLVFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKSFRD 387

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            KF VL+  ++   GLD+P   LV       +       + I   GR  R     V +  
Sbjct: 388 NKFSVLIATDVAARGLDLPMVDLVIQCAPPSD-----IDAFIHRAGRTGRAGRKGVCVLL 442

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
               +  +  ++   R  + + +      + P   +E+I++ +     ED A        
Sbjct: 443 YQPRE--EYVVERIERHAKMKFD------VLPAPTREEILKAVARDAAEDLARVERRATN 494

Query: 751 QQLSLSKKKGK 761
             +  + +  K
Sbjct: 495 LFMEQAAELLK 505


>gi|326931593|ref|XP_003211912.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like
           [Meleagris gallopavo]
          Length = 814

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 8/136 (5%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H++    +R  ++   R GK
Sbjct: 608 MRELVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDNVVHSFRAGK 667

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     +V   D        S    I  IGR  R  ++ K + +  
Sbjct: 668 IWVLICTALLARGIDFKGVNMVINYD-----LPTSAVEYIHRIGRTGRAGHTGKAVTFFT 722

Query: 692 TITKSIQLAIDETTRR 707
              K +  +I    +R
Sbjct: 723 EDDKPLLRSIANVIQR 738


>gi|251773001|gb|EES53557.1| putative ATP-dependent helicase [Leptospirillum ferrodiazotrophum]
          Length = 472

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+   TKR AEDL   L         +H +    +R  ++   R G+  +LV  ++  
Sbjct: 247 QTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQTRILVATDVAA 306

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAID 702
            GLDI     V   D       +S    +  IGR  R   S   I +     +++   I+
Sbjct: 307 RGLDIDTVTCVINYD-----LPQSPEDYVHRIGRTGRAGRSGRAISFCHPADRNLLRDIE 361

Query: 703 E 703
            
Sbjct: 362 R 362


>gi|229821387|ref|YP_002882913.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
 gi|229567300|gb|ACQ81151.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
           12333]
          Length = 580

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 14/189 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-----DVYDEINL 577
            T++ SAT PG+      + +     IR     D    +++ R  V      D  + +  
Sbjct: 232 HTMLFSATMPGAVVALARRFMSHPTHIRAHDPNDDGATLKAIRKVVYRAHALDKVEMLAR 291

Query: 578 AAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             Q   R   ++   TKR A  + + L +R      +H ++    R + +R  R GK DV
Sbjct: 292 LLQADGRGLTIVFTRTKRTAAKVADELVDRGFAAAAIHGDLGQGAREQALRAFRHGKVDV 351

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   G+DI +   V             + + +  IGR  R  N+   + + D   
Sbjct: 352 LVATDVAARGIDIDDVTHVVNYQC-----PEDEKTFLHRIGRTGRAGNTGTAVTFVDWDD 406

Query: 695 KSIQLAIDE 703
                 ID 
Sbjct: 407 IPRWALIDR 415


>gi|145496370|ref|XP_001434176.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401299|emb|CAK66779.1| unnamed protein product [Paramecium tetraurelia]
          Length = 472

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 74/400 (18%), Positives = 132/400 (33%), Gaps = 56/400 (14%)

Query: 336 IEIFPSHLEDVAWRVSMFGND-IEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
           +  FP  L+++  +    G   I+  S    LTG  +  +          ++ P      
Sbjct: 74  VYCFPKPLQELIVQAGFPGPTPIQAQSWSIGLTGHDLIGIAQTGSGKTLAFLLP------ 127

Query: 395 AMKYIKEELKMRLI---ELEKEGRLLEAQRLEQRITYDL-EMLETTGSCQSIENYS---- 446
           A+ +I  +LK        +    R L  Q  EQ   + +   L+        E +     
Sbjct: 128 AIIHILAQLKQNADPQCLIMAPTRELTHQIYEQFTKFSVGSGLKAACLFGGQEKFIQKNQ 187

Query: 447 ----RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF 502
                ++    PG     L +         V+    T+  ++ +   +  R     + GF
Sbjct: 188 LNQHPHILIACPGR----LID--------LVESGSTTLKGVTFLVLDEADRM---LDMGF 232

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII---------RPTG 553
             PS          E       T++ SAT              +Q I             
Sbjct: 233 E-PSIRKIVAQTRAE-----RQTMLFSATWPKEVQSLALDFCTQQPIHIQIGSLDLTSNR 286

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
            +   V I S   + + + + +     +  +I++   TK   + L  YL +  +R + +H
Sbjct: 287 QIQQKVVILSKEQKEDKLKEILKSLGTR--KIIIFCQTKIKCDQLQLYLIQDGLRCKSLH 344

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            + +  ER  ++   + G   VLV  ++   GLDI +   V   D  K          + 
Sbjct: 345 GDKRQSERDFVMNSFKKGDTTVLVATDVASRGLDIKDIEFVINFDMPKM-----IEDYVH 399

Query: 674 TIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
            IGR  R     V +      +  +LA D     RE Q E
Sbjct: 400 RIGRTGRAGAQGVSISLFDSYEDAKLAGDLVGVLRESQNE 439


>gi|116628939|ref|YP_814111.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238853538|ref|ZP_04643910.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4]
 gi|311111251|ref|ZP_07712648.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
 gi|116094521|gb|ABJ59673.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC
           33323]
 gi|238833834|gb|EEQ26099.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4]
 gi|311066405|gb|EFQ46745.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
          Length = 485

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 98/259 (37%), Gaps = 19/259 (7%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEI 575
           +  T++ SAT   P     E+         I+   L    ++   +R+   +  D+   +
Sbjct: 174 KHQTLLFSATMPKPILRIGEKFMHDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRL 233

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L  ++   TKR  ++LT  L  R      +H ++   +R+ +++  R GK D+
Sbjct: 234 IDVQNPDL-AVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDI 292

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   N   + +     
Sbjct: 293 LVATDVAARGLDISGVSHVYNYD-----IPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNE 347

Query: 695 KSIQLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                 I++ T ++   L+     +       +  +K+ E++D  L +     +  +D  
Sbjct: 348 IGYMRTIEQLTHKKMMPLKPPTDEEAFKGQLSAANKKVTELLDGDLSKYTTEASQLLD-- 405

Query: 752 QLSLSKKKGKAHLKSLRKQ 770
               +     A LK+L K 
Sbjct: 406 -DYSAVDLVAALLKNLSKD 423


>gi|17064740|gb|AAL32524.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|21387105|gb|AAM47956.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
          Length = 421

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 68/193 (35%), Gaps = 16/193 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEIRSARTQVEDVYDE 574
              T++ SAT  S         +         ++   T L+   VE      +   + D 
Sbjct: 147 VRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDL 206

Query: 575 INLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           ++   +   +    L+ V TKR A+ L  +L         +H +    ER   +R  + G
Sbjct: 207 LHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTG 266

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YA 690
           +  +LV  ++   GLDIP    V   D             +  IGR  R   S +   + 
Sbjct: 267 RTPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKSGIATAFF 321

Query: 691 DTITKSIQLAIDE 703
           +     +  ++ E
Sbjct: 322 NENNAQLARSLAE 334


>gi|73969113|ref|XP_860733.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 12 [Canis
           familiaris]
          Length = 656

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 18/151 (11%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ V TKR  +DLT  +         +H +    ER  ++ + R GK  +L+ 
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 639 INLLREGLDI------PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            ++   GL         +   V   D     +  S    +  IGR AR+ N        T
Sbjct: 396 TDVASRGLGFCIYVYVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFT 450

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
              +++ A      R   ++       INP+
Sbjct: 451 PG-NLKQA------RELIKVLEEANQAINPK 474


>gi|261392357|emb|CAX49897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
 gi|325204361|gb|ADY99814.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240355]
          Length = 462

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKDPEII--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|256088516|ref|XP_002580378.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665945|emb|CAZ36617.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 959

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 17/151 (11%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   + +  E L + + +      Y+H+ +   +R  +  D R G    LV  +LL  G
Sbjct: 792 IIFCSSAQRVELLAKKITQLGYSCYYIHARMSQQDRNRVFHDFRNGCCRNLVCTDLLTRG 851

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +DIP   +V   D  K        + +  IGR+ R  +  + +   T      L   ET 
Sbjct: 852 IDIPTVNVVINFDFPKYS-----ETYLHRIGRSGRFGHLGIAINLVTYADRYSLKTVETE 906

Query: 706 ------------RRREKQLEHNKKHNINPQS 724
                        +R    E+  ++N++P +
Sbjct: 907 LVTEIKPIPKEIDKRLYVAEYQNENNLDPMT 937


>gi|284992633|ref|YP_003411187.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284065878|gb|ADB76816.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
           DSM 43160]
          Length = 611

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 67/177 (37%), Gaps = 18/177 (10%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---------EDV 571
           +  T++ SAT PG         +     IR  G  +         TQ           ++
Sbjct: 285 KRQTMLFSATMPGPIVTLSRSFMTQPTHIRAHG--NDEGSTVPQTTQFIYRAHNLDKPEL 342

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
              +  A  + L +++   TKR A+ + + L ER      +H ++    R + +R  R G
Sbjct: 343 LSRVLQARDRSL-VMVFCRTKRTAQKVADELVERGFAAAAVHGDLGQGAREQALRAFRSG 401

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           K DVLV  ++   G+D+     V             + + +  IGR  R  +  V +
Sbjct: 402 KVDVLVATDVAARGIDVTGVSHVVNY-----QCPEDEKTYLHRIGRTGRAGSEGVAV 453


>gi|224139932|ref|XP_002323346.1| predicted protein [Populus trichocarpa]
 gi|222867976|gb|EEF05107.1| predicted protein [Populus trichocarpa]
          Length = 611

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 70/192 (36%), Gaps = 20/192 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYD 573
              T++ SAT    E+++     +   I          T L+   VE      +   + D
Sbjct: 342 MRQTMLFSAT-FPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQEIDKRSHLMD 400

Query: 574 EINLAAQ-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            ++   +     +    L+ V TK+ A+ L   L+        +H +    ER   +R  
Sbjct: 401 LLHAQRETEVNSKHSLTLVFVETKKGADSLEHLLHVNGFPATSIHGDRTQQEREMALRSF 460

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + GK  +LV  ++   GLDIP    V   D             +  IGR  R  N+ +  
Sbjct: 461 KSGKTPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGNTGLAT 515

Query: 689 YADTITKSIQLA 700
            A     S+ LA
Sbjct: 516 -AFFNENSMSLA 526


>gi|56972628|gb|AAH88581.1| ddx52-prov protein [Xenopus (Silurana) tropicalis]
          Length = 585

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R  +I+  R GK
Sbjct: 409 MRDLVKKGFTPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNVIQSFREGK 468

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     +V   D     F  S    I  IGR  R  +  K + +  
Sbjct: 469 IWVLICTALLARGIDFKGVNMVINYD-----FPTSAVEYIHRIGRTGRAGHRGKAVSFFT 523

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 524 EDDKPMLRSV 533


>gi|306783973|ref|ZP_07422295.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu003]
 gi|308331209|gb|EFP20060.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu003]
          Length = 563

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 71/191 (37%), Gaps = 13/191 (6%)

Query: 523 PTTIVVSAT--PGSWELE-QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
               + SAT  P   +L  +      E   +    VD  +    +  QV    D +    
Sbjct: 188 KQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVDENISQ--SYIQVARKMDALTRVL 245

Query: 580 QQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +      +++ V TK+  E++ E L  R      +  +V   +R   I  LR G  D+LV
Sbjct: 246 EVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILV 305

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-S 696
             ++   GLD+     V   D           S +  IGR  R   S   L   +  +  
Sbjct: 306 ATDVAARGLDVERISHVLNYD-----IPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH 360

Query: 697 IQLAIDETTRR 707
           +  AI++ TR+
Sbjct: 361 LLKAIEKATRQ 371


>gi|291447570|ref|ZP_06586960.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291350517|gb|EFE77421.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 458

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 83/233 (35%), Gaps = 28/233 (12%)

Query: 492 HRKATLAE-YGFRLPSCMDNRPLRFEEWNCLR-------PTTIVVSAT-PGSWELEQCQG 542
            RK  L+   G  L    +   L F                T++ SAT PG+      + 
Sbjct: 150 QRKLDLSHIRGLVLDEADEMLDLGFLPDVERIITMLPAKRQTMLFSATMPGAVISLARRY 209

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE--------INLAAQQGLRILLTVLTKRM 594
           +     I  T   D    +++    V   ++         I  A  +GL  ++   TKR 
Sbjct: 210 MSQPTHINATSPDDEGTTVKNTVQHVYRAHNMDKPEMLARILQADGRGL-AMIFCRTKRT 268

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A D+ E L +R      +H ++    R + +R  R GK DVLV  ++   G+D+     V
Sbjct: 269 AADIAEQLEKRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHV 328

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS----IQLAID 702
               +        + + +  IGR  R     V I   D         I  A+D
Sbjct: 329 VNYQS-----PEDEKTYLHRIGRTGRAGAKGVAITLVDWDDIPRWQLINKALD 376


>gi|291437415|ref|ZP_06576805.1| helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291340310|gb|EFE67266.1| helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 463

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 16/191 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE------ 574
           R  T++ SAT PG+      + +     IR T   D    + + +  V   ++       
Sbjct: 189 RRQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTKQFVYRAHNMDKPEMV 248

Query: 575 --INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +GL  ++   TKR A DL + L +R      +H ++    R + +R  R GK
Sbjct: 249 ARILQAEGRGL-AMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGK 307

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            DVLV  ++   G+D+     V    + +E     + + +  IGR  R       I   D
Sbjct: 308 VDVLVCTDVAARGIDVEGVTHVINYQSPEE-----EKTYLHRIGRTGRAGAKGTAITLVD 362

Query: 692 TITKSIQLAID 702
                    I+
Sbjct: 363 WDDIPRWQLIN 373


>gi|312114880|ref|YP_004012476.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220009|gb|ADP71377.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 405

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 93/255 (36%), Gaps = 32/255 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ + ++         + Q S     +  R     + GF      D R L   
Sbjct: 134 TPGRLLDHLGQGTV--------DLGQTSYFVIDEADRM---LDMGFI----RDVRKLM-- 176

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           +    +  +I+ SAT    E+      I++  +  T +    V +     +V  V     
Sbjct: 177 KVMPRKRQSILFSAT-MPKEIATLAEDILKDPVHIT-IPAKTVAVERIDQRVHLVTTGNK 234

Query: 577 LAAQQGL-------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                GL       R+++   TKR A  + E L +  +    +H       R + + +LR
Sbjct: 235 PTMLAGLLDQPEFDRVIVFTRTKRSANRVAERLLQGGVPTEAIHGNKSQAARQKALENLR 294

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            GK  VLV  ++L  G+D+     V   +           + +  IGR AR  +  + I 
Sbjct: 295 QGKARVLVATDILARGIDVDSISHVINYE-----LPNDPENYVHRIGRTARAGSDGIAIS 349

Query: 689 YADTITKSIQLAIDE 703
           + D   ++    I+ 
Sbjct: 350 FCDLSERASLRNIER 364


>gi|294901515|ref|XP_002777392.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239885023|gb|EER09208.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 531

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +D   ++      G +I++   TKR A+DLT  L         +H + K  ER  ++++ 
Sbjct: 350 KDKLKQLLERIMDGSKIVIFTDTKRAADDLTRMLRMDGWPALSIHGDKKQEERDWVLQEF 409

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + GK  +++  ++   GLD+ +   V   D     F       +  IGR  R        
Sbjct: 410 KSGKSPIMIATDVASRGLDVKDLRHVINYD-----FPGQIEDYVHRIGRTGRAGAKGSAY 464

Query: 689 YADTITK 695
              T  K
Sbjct: 465 SFFTPDK 471


>gi|223649022|gb|ACN11269.1| Probable ATP-dependent RNA helicase DDX5 [Salmo salar]
          Length = 614

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 14/159 (8%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++  + +EI    ++  + ++   TKR  +++T  +         +H +    ER  +
Sbjct: 326 EDKLLRLLEEIMS--EKENKTIIFTETKRRCDEITRRMRRDGWPAMGIHGDKSQQERDWV 383

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + + GK  +L+  ++   GLD+ +   V   D     +  +    I  IGR AR+  +
Sbjct: 384 LNEFKFGKAPILIATDVASRGLDVEDVKFVINFD-----YPNNSEDYIHRIGRTARSQKT 438

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
                  T   +++ A D     RE          INP+
Sbjct: 439 GTAYTFFTPN-NMRQASDLVAVLREANQA------INPK 470


>gi|77917983|ref|YP_355798.1| putative ATP-dependent RNA helicase [Pelobacter carbinolicus DSM
           2380]
 gi|77544066|gb|ABA87628.1| putative ATP-dependent RNA helicase [Pelobacter carbinolicus DSM
           2380]
          Length = 435

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 74/207 (35%), Gaps = 28/207 (13%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            +  T++ +AT     L      +  +++     +D  V +++    +E      +    
Sbjct: 177 RQRQTMMFTAT-----LNDAMQKMARRLLDDPFRIDIAV-VKNVSDHIEQHLHVADNRQH 230

Query: 581 QGL------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +              + ++   TKR A+ L   L  +  R   +H ++    R   +RDL
Sbjct: 231 KNRLLQHLLKHSDISQAIVFSATKRDADSLARDLSAQGYRAAALHGDMNQGARNRTVRDL 290

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G+  VLV  ++   GLD+     V   D  K          +  IGR  R   + V +
Sbjct: 291 RRGRIRVLVATDVAARGLDVAGISHVFNYDLPKF-----AEDYVHRIGRTGRAGATGVAI 345

Query: 689 YA-----DTITKSIQLAIDETTRRREK 710
                   +  + IQ  I     RRE 
Sbjct: 346 SFVSGAEVSALRRIQHFIGRELPRREI 372


>gi|127511465|ref|YP_001092662.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126636760|gb|ABO22403.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 599

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 66/191 (34%), Gaps = 11/191 (5%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
              + SAT          +     V   I  +      +E R  +    +  + +     
Sbjct: 182 QLALFSATMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRVLE 241

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +    I++ V T+    +L E L  R      +H ++    R   +  L+ GK D+L+ 
Sbjct: 242 VENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLD+   G V   D           + +  IGR  R   +   IL+       +
Sbjct: 302 TDVAARGLDVERIGHVINYD-----IPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRM 356

Query: 698 QLAIDETTRRR 708
              I+  T+ R
Sbjct: 357 LRTIERATKSR 367


>gi|313124261|ref|YP_004034520.1| ATP-dependent helicase (dead/deah box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280824|gb|ADQ61543.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 453

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 25/211 (11%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
              L+   TK+M ++L +YL ++ ++V  +H  +   ER   +R++R G++  +V  +L 
Sbjct: 245 YLALVFANTKQMVDELADYLTKQGLKVAKIHGGITERERKRTLREVRAGQYQFVVASDLA 304

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-------------------- 682
             G+D+P   LV   +  KE        +I  IGR  RN                     
Sbjct: 305 ARGIDLPGVSLVINYEIPKE-----LEFIIHRIGRTGRNGLPGHAVTLVREEEMNRVGAL 359

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
               + +     K   LA+    RRR+ +   N++ N + + V +K+     P   +   
Sbjct: 360 EHMGVHFDFVEIKDGALALRTHYRRRDNRTAANRQLNPHMRGVVKKVKSKRKPGYKKKIK 419

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRKQMHL 773
                 + ++  +  +    H K LRK+   
Sbjct: 420 QAIQEDNRKKRKIEARHEMRHQKRLRKRKRE 450


>gi|306829117|ref|ZP_07462307.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
           6249]
 gi|304428203|gb|EFM31293.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
           6249]
          Length = 525

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTELVD-QYYIRVKEQEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++            E  A     +
Sbjct: 349 GYLQIIENLTKKRMKGLKPASAEEAFQAKKQVALKKIERDFANEEIRSNFEKFAKDARKL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    S ++   ++ SL  Q
Sbjct: 409 AAEF---SPEELAMYILSLTVQ 427


>gi|261377495|ref|ZP_05982068.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
           14685]
 gi|269146228|gb|EEZ72646.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
           14685]
          Length = 473

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKDPEVI--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|189346300|ref|YP_001942829.1| transcription-repair coupling factor [Chlorobium limicola DSM 245]
 gi|189340447|gb|ACD89850.1| transcription-repair coupling factor [Chlorobium limicola DSM 245]
          Length = 1116

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 93/264 (35%), Gaps = 48/264 (18%)

Query: 153 QPAAIAQLLKGIH---SREKVQL----LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKIL 205
           Q  A   L K +    S    QL    + G++GS  + T A +      P +V++     
Sbjct: 38  QTDAFRLLKKRLEQNASGSAAQLDPIGITGISGSLASLTAALLFFETDSPILVIS----- 92

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRS 265
                       P N  E F + ++   P               S     D++   A  +
Sbjct: 93  -----------GPEND-ELFENDFNLLVPSG-------------SFFSVYDQLPL-AMMA 126

Query: 266 LLERNDCIVVSSVS-CIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGI 324
           L +    ++ +S S     + S +   + + +L        ++L + L + Q++ ++   
Sbjct: 127 LADGTSVLLHASFSDLQQPLCSPDEIGKKLFRLDREKDAGYEKLKNFLRENQFEHREFVE 186

Query: 325 IRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSH 384
             G F V G  I++F S       R+  FG+ +  +  F   +    + VE I +  N  
Sbjct: 187 DEGEFSVRGSIIDVF-SFGSPEPVRIEFFGDTVTSLRIFDINSQLSGKTVEHITVTGNFS 245

Query: 385 YVTPRPTL--------NTAMKYIK 400
           + T              +A+  I+
Sbjct: 246 HETGSGKESYMLDYLPESAIILIE 269



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 64/178 (35%), Gaps = 7/178 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     I+        PVE   +      +   I    Q+  
Sbjct: 690 TLTMSATPIPRTLQFSMLGARDLSIVSTPPKNRQPVETSISDYDPVLIQLAIQREIQRDG 749

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E++   L E     R  Y H ++ + E  +++ D    + DVL+  ++
Sbjct: 750 QVFFLHNRISGLEEIQHILRELVPYARIVYAHGQMPSKELEKVMMDFMQKEVDVLISTSI 809

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +  GLDI     + I  AD  G       L Q  GR  R+              +++ 
Sbjct: 810 IGSGLDISNANTIIINRADMFGL----ADLYQLRGRVGRSERKAFCYMIAPPIHTLKR 863


>gi|323697782|ref|ZP_08109694.1| transcription-repair coupling factor [Desulfovibrio sp. ND132]
 gi|323457714|gb|EGB13579.1| transcription-repair coupling factor [Desulfovibrio desulfuricans
           ND132]
          Length = 1161

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 124/360 (34%), Gaps = 47/360 (13%)

Query: 154 PAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKIL--AAQLYS 211
           P  IA  +KG     ++      +G G    +A  + A     +++ P        Q   
Sbjct: 6   PKDIADFMKGTVDSVRIFK----SGPGSQALLAGSLLAGGSDVVLVVPGATEFKEMQALL 61

Query: 212 EFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN- 270
              +      +E      ++     Y+PR         S        R +A   L+ R+ 
Sbjct: 62  TLLSRGAPGGIERPAWEREWVFLPPYLPRN------PESSGWS---ERWAALYGLVYRDG 112

Query: 271 -DCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF 329
              +++++ + +      +   +  V L  G+ +    LL  LV   Y R+ +    G  
Sbjct: 113 PRGVLMTADNLLPHWPDEKVLRENWVALTRGEEMSPDILLEQLVSWGYVRRKLVAEPGDM 172

Query: 330 RVCGDSIEIF-PSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTP 388
            + GD ++I  P +  ++  R+  FG+ +EEI  F P + +   ++    +   +  +T 
Sbjct: 173 AMRGDILDIHAPGY--ELPLRLEFFGDVLEEIRLFDPASQRSKADLTEAVLLPVAPCITS 230

Query: 389 RPTLNTAMKYIKEELKMRLIELEKEGRL--LEAQRLEQRITYDLEMLETTGSCQSIENYS 446
                 A        + +  +L + G +  ++ Q L +R+  +                 
Sbjct: 231 GDRGFRA--------RDQWEKLRRTGEISAVQEQALSERLDVNDG--------------- 267

Query: 447 RYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFH-RKATLAEYGFRLP 505
            ++      + P  L  ++P ++   +        ++    +      K    + G  LP
Sbjct: 268 -FIWPGLYYDAPVGLETFLPGEAAWLLSSGGSLRARLEDREQAWRDFLKDEERDKGVSLP 326



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 70/201 (34%), Gaps = 14/201 (6%)

Query: 514 RFEEWNCLRPTTIVV---SATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           + +E        I V   +ATP    L+    GI    +I    +   PVE      +  
Sbjct: 748 KHKEKLKHFRQNIDVLTLTATPIPRTLQLSLSGIRGLSVIETPPVDRKPVETGIMEREEL 807

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRD 627
           ++   +     +G ++          E + E++       R    H  +      E +RD
Sbjct: 808 ELKAVLRRELDRGGQVYWVYNRVNGLERVAEFVRGLVPDARVGMAHGRMSEKGLEEAMRD 867

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
              G+ DVLV  +++  GLD P    + +  A   G  +    L Q  GR  R+      
Sbjct: 868 FWHGELDVLVCTSIVESGLDFPNANTLIVDQAQLFGLGQ----LYQLRGRVGRSERQAYA 923

Query: 688 LYADTITKSIQLAIDETTRRR 708
            +     K     I E  R+R
Sbjct: 924 YFVVPSIKD----ISEIVRKR 940


>gi|303242080|ref|ZP_07328571.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302590374|gb|EFL60131.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 499

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 77/205 (37%), Gaps = 17/205 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIR-SARTQVEDVYDEINLAA 579
           T++ SAT        C+  + +    +I   T  VD   +I      Q ++      L  
Sbjct: 179 TLLFSATIPPEIRRICKEYMKQPLTIEIKSQTKTVDTIEQIYYRIDNQQKNTELNHLLLI 238

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++    ++   TK   + +  +L  +    + +H ++    R++ I+  + G F +LV  
Sbjct: 239 ERPESCMIFCNTKIAVDKVQSFLSRKGYACQSLHGDIPQARRMKTIQQFKQGDFHLLVAT 298

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ- 698
           ++   G+ I    LV   D   E     K + +  IGR  R  N    L   T    +  
Sbjct: 299 DVAARGIHIDNLSLVINYDVPLE-----KDNYVHRIGRTGRAGNGGRALTLVTSEDIMSL 353

Query: 699 LAIDE------TTRRREKQLEHNKK 717
            AI+E      T      Q  +N +
Sbjct: 354 YAIEEHIGAMITEGELPTQEMYNAQ 378


>gi|238493219|ref|XP_002377846.1| RNA helicase (Dbp), putative [Aspergillus flavus NRRL3357]
 gi|317157028|ref|XP_001826178.2| ATP-dependent RNA helicase dbp2 [Aspergillus oryzae RIB40]
 gi|220696340|gb|EED52682.1| RNA helicase (Dbp), putative [Aspergillus flavus NRRL3357]
          Length = 556

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 73/185 (39%), Gaps = 16/185 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T + SAT    E+ Q     +   I+             +   VE+ S   + + +   
Sbjct: 312 QTCMWSAT-WPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKH 370

Query: 575 INLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +    + +G + L+   TKR+A+++T +L +       +H + +  ER  ++ + + GK 
Sbjct: 371 LEKIMENRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKS 430

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+ +   V   D     +  +    +  IGR  R       +   T 
Sbjct: 431 PIMVATDVASRGIDVRDITHVLNYD-----YPNNSEDYVHRIGRTGRAGAKGTAITFFTT 485

Query: 694 TKSIQ 698
             S Q
Sbjct: 486 DNSKQ 490


>gi|168034811|ref|XP_001769905.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|168034871|ref|XP_001769935.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678811|gb|EDQ65265.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678841|gb|EDQ65295.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 582

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 84/226 (37%), Gaps = 39/226 (17%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIR--------PTGLVDPPVEIRSARTQVEDVY 572
            +  T++ SAT    E+E      ++  IR        PT  V   +E  + + ++E + 
Sbjct: 313 KKHQTLLFSAT-MPEEIEALAQEYLDNPIRVKVGRVSSPTANVTQNLEKITEKEKIESLL 371

Query: 573 DEINLAAQQGLRI-------LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
             +     Q L         ++ V  K   +++T+ L E+ ++   +H      ER   +
Sbjct: 372 ALLVDEHSQSLDTNQPPPLTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAAL 431

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           RD R G  ++LV  ++   GLD+     V  LD  K     +    +  IGR  R   S 
Sbjct: 432 RDFRKGTTNILVATDVASRGLDVTGVAHVINLDLPK-----TMEDYVHRIGRTGRAGASG 486

Query: 686 VILYADTITK-----SIQLAIDETT-------------RRREKQLE 713
                 T         I+ AI E               RR+E++  
Sbjct: 487 RATSFYTERDMFLVAQIRRAITEAESGNAMAFATGKAARRKEREQA 532


>gi|145332383|ref|NP_001078148.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|332641919|gb|AEE75440.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 402

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 193 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKE 252

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 253 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 310

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 311 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 365

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 366 GVAINFVTRDDERMLFDI 383


>gi|91206538|sp|Q2U070|DBP2_ASPOR RecName: Full=ATP-dependent RNA helicase dbp2
 gi|83774922|dbj|BAE65045.1| unnamed protein product [Aspergillus oryzae]
          Length = 554

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 73/185 (39%), Gaps = 16/185 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T + SAT    E+ Q     +   I+             +   VE+ S   + + +   
Sbjct: 310 QTCMWSAT-WPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKH 368

Query: 575 INLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +    + +G + L+   TKR+A+++T +L +       +H + +  ER  ++ + + GK 
Sbjct: 369 LEKIMENRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKS 428

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+ +   V   D     +  +    +  IGR  R       +   T 
Sbjct: 429 PIMVATDVASRGIDVRDITHVLNYD-----YPNNSEDYVHRIGRTGRAGAKGTAITFFTT 483

Query: 694 TKSIQ 698
             S Q
Sbjct: 484 DNSKQ 488


>gi|88856286|ref|ZP_01130945.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
 gi|88814370|gb|EAR24233.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
          Length = 638

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 76/199 (38%), Gaps = 15/199 (7%)

Query: 523 PTTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
               + SAT            L   + I V+     +        + S   +V+ +   +
Sbjct: 192 KQVALFSATMPAQIRRISKKYLRDAEEITVKSQTTTSANTSQRYLVVSYPQKVDALTRIL 251

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +   +G  +++ V TK   E+L E L  R      +  +V   +R   +  L+ GK D+
Sbjct: 252 EVENFEG--MIVFVRTKSETENLAEKLRARGYSAAAISGDVAQAQRERTVNQLKSGKLDI 309

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLD+     V   D   +       S +  IGR  R   S   I +     
Sbjct: 310 LVATDVAARGLDVDRISHVVNFDIPVD-----TESYVHRIGRTGRAGRSGSAISFVTPRE 364

Query: 695 KSIQLAIDETTRRREKQLE 713
           + +  AI++ TR+   Q++
Sbjct: 365 RRLLTAIEKATRQPLTQMQ 383


>gi|323691087|ref|ZP_08105368.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           symbiosum WAL-14673]
 gi|323504856|gb|EGB20637.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           symbiosum WAL-14673]
          Length = 552

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 96/248 (38%), Gaps = 36/248 (14%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT  P   E+ +      E +      +    +     E++  +T+VE +   +
Sbjct: 180 QTVMFSATMPPAIAEIAKKFQKDPEIVKVVKKELTVPKVTQYYYEVKP-KTKVEVMCRLL 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++   +    ++   TKR  +DL + L  R      +H ++K ++R  ++   R G+ D+
Sbjct: 239 DMYDPK--LSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   G+D+ +   V   D       +     +  IGR  R               
Sbjct: 297 LIATDVAARGIDVDDVEAVFNYD-----IPQDDEYYVHRIGRTGRAGREGKAFSLV---- 347

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSV----------KEKIMEVIDPILLEDAATTN 745
                  E  + RE Q     K  I PQ +           EKIM+ ++ I+ +      
Sbjct: 348 ----VGREVYKLREIQ--RYCKTKIIPQPIPSLNDVTSIKVEKIMDSVEEIIRDSDLDKI 401

Query: 746 ISIDAQQL 753
           I+I  +++
Sbjct: 402 INIVEKRV 409


>gi|285018817|ref|YP_003376528.1| ATP-dependent RNA helicase (cold-shock dead box protein)
           [Xanthomonas albilineans GPE PC73]
 gi|283474035|emb|CBA16536.1| probable atp-dependent rna helicase (cold-shock dead box protein)
           [Xanthomonas albilineans]
          Length = 657

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 84/203 (41%), Gaps = 23/203 (11%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   ++L + L  R +    ++ +++  +R  +I+ L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     + +  AI+ 
Sbjct: 311 GLDVERISHVLNYD-----IPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLRAIER 365

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
            TR+  ++++      +N Q V   +  + + I           ID+ +  L + + + +
Sbjct: 366 ATRQPIEEMQLPSVDAVNDQRVSRFMERISETIAAG-------GIDSYRELLQRFEAEKN 418

Query: 764 LKSLRKQMHLAADNLNFEEAARI 786
           +      M   A  L     AR+
Sbjct: 419 IP-----MVEVAAAL-----ARL 431


>gi|225559706|gb|EEH07988.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           capsulatus G186AR]
          Length = 1201

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 88/252 (34%), Gaps = 28/252 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     VE I+    +V P +    E+R+  T+   +   + 
Sbjct: 749 QTVLFSATFPRNMEALARKTLAKPVEIIVGGKSVVAPEITQIVEVRNQDTKFVRLLALLG 808

Query: 577 LA----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                   +  R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 809 ELYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKAGV 868

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F +L+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 869 FPILIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 921

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K      P+ V++ +   ++ +       +      
Sbjct: 922 --------LTEDQERYSVDISKALKQSGQPVPEPVQKLVNSFMEKVKAGKEKASGSGFGG 973

Query: 751 QQLSLSKKKGKA 762
           + L    ++  A
Sbjct: 974 KGLERLDQERDA 985


>gi|148224339|ref|NP_001082033.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Xenopus laevis]
 gi|10764780|gb|AAG22818.1|AF302422_1 RNA helicase II/Gu [Xenopus laevis]
          Length = 800

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 96/257 (37%), Gaps = 33/257 (12%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEI--------RSARTQVED 570
           P T++ SAT   W     +  + +Q  +            + +        RS +  V  
Sbjct: 404 PQTLLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRSQKAAV-- 461

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D + + +    + ++   +K  A +L+          + +H +++  ER  +++  R 
Sbjct: 462 LGDIVQVYSGSHGKTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLKGFRQ 521

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G F+VL+  N+   GLDIPE  LV +  A KE       + +   GR  R   + V I  
Sbjct: 522 GTFEVLIATNVAARGLDIPEVDLVVLYSAPKE-----ADAYVHRSGRTGRAGRTGVCISL 576

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
            +   K     ++ +T              I  + V    +  +      DA  +  ++ 
Sbjct: 577 YEPWEKHYLRNVERST-------------GITFKRVGIPSLMNVAKSSSADAIKSLDTVP 623

Query: 750 AQQLSLSKKKGKAHLKS 766
           A  +   K+  +  ++ 
Sbjct: 624 ADVIEHFKEYAQELIEK 640


>gi|167533981|ref|XP_001748669.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772910|gb|EDQ86556.1| predicted protein [Monosiga brevicollis MX1]
          Length = 592

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++    K+  +D+ EYL  + +    +H      ER   ++  + G+ DVLV  ++  +
Sbjct: 405 VMIFSEKKQDVDDIHEYLLLKGVHAAAIHGSKDQEERDMAVKGFKEGRKDVLVATDIASK 464

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD P+   V   D  +E       + +  IGR  R+  + +     +    +   +D
Sbjct: 465 GLDFPDIKHVINFDMPEE-----LENYVHRIGRTGRSGKTGLATTFVSDMVPMTTLLD 517


>gi|124806246|ref|XP_001350668.1| DEAD-box helicase [Plasmodium falciparum 3D7]
 gi|23496794|gb|AAN36348.1| DEAD-box helicase [Plasmodium falciparum 3D7]
          Length = 742

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 8/149 (5%)

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL---RILLTVLTKRMAE 596
               +  QI +     +  +E     +   D+  ++    ++     +IL+   TKR  +
Sbjct: 555 SYDPVKIQIGKNELTANKNIEQNVIISSSIDMKKKLLDWLKENYENNKILIFCDTKRNCD 614

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L + L         +H + +  ER  I+ + +  + ++LV  ++   GLDI    +V  
Sbjct: 615 NLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILVATDVASRGLDIKNISVVIN 674

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D        +    I  IGR  R     
Sbjct: 675 YD-----IPNTIEDYIHRIGRTGRAGKKG 698


>gi|311271296|ref|XP_001928807.2| PREDICTED: LOW QUALITY PROTEIN: nucleolar RNA helicase 2 [Sus
           scrofa]
          Length = 844

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 95/254 (37%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSAT------PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVY- 572
           P T++ SAT        + +  +     V+ I + T      VE   I+   TQ   V  
Sbjct: 430 PQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIG 489

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A++L++         + +H ++   +R   ++  R G 
Sbjct: 490 DVIRVYSGYQGRTIIFCETKKEAQELSQ-NAAVRQDAQSLHGDIPQKQREITLKGFRNGD 548

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + + +    
Sbjct: 549 FGVLVATNVAARGLDIPEVDLVVQSCPPKDV-----ESYIHRSGRTGRAGRTGICICFYQ 603

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QL + E            +K  I  + +       I     +DA     S+    
Sbjct: 604 HKEEYQLTLVE------------QKAGIKFKRIGVPSPTEIIKASSKDAIRLLDSVPPTA 651

Query: 753 LSLSKKKGKAHLKS 766
           +   K+  +  ++ 
Sbjct: 652 IGHFKQSAEKLIEE 665


>gi|297847866|ref|XP_002891814.1| hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337656|gb|EFH68073.1| hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 501

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSAT-PGSWEL-------EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E           + II    ++    +   V++ S  +Q  +   ++
Sbjct: 279 QTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVIS-ESQKYNKLVKL 337

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G RIL+ + TK+  + +T  L         +H +    ER  ++ + R GK  +
Sbjct: 338 LEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPI 397

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  S    +  IGR  R           T+  
Sbjct: 398 MTATDVAARGLDVKDVKYVINYD-----FPGSLEDYVHRIGRTGRAGAKGTAYTFFTVAN 452

Query: 696 S 696
           +
Sbjct: 453 A 453


>gi|328697427|ref|XP_001946984.2| PREDICTED: ATP-dependent RNA helicase p62-like isoform 1
           [Acyrthosiphon pisum]
          Length = 551

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 92/261 (35%), Gaps = 44/261 (16%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++         ES  T  Q       D      + + GF         P   +
Sbjct: 267 TPGRLLDFL---------ESRATNLQRCTYLVLDEA--DRMLDMGFE--------PQIRK 307

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIR----------PTGLVDPPVEI--- 561
               +RP    ++ SAT    E+++     +   I+             ++   V++   
Sbjct: 308 IIQQIRPDRQVLMWSAT-WPKEVQKLANDFLSDYIQLNVGSLTLSANHNILQN-VDVCQE 365

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
                ++ D+  +I    +   + ++   TKR  + +T  +     R   +H +    ER
Sbjct: 366 HEKEDKLMDLLQDIANMEEN--KTIIFAETKRKVDTITRKITNMGARAVGIHGDKSQSER 423

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             +++  R G+ ++LV  ++   GLD+ +   V   D     +  +    I  IGR  R+
Sbjct: 424 DHVLKQFRGGRANILVATDVAARGLDVDDVKFVINFD-----YPNNSEDYIHRIGRTGRS 478

Query: 682 VNSKVILYADTITKSIQLAID 702
                  YA     + + A D
Sbjct: 479 SQKGT-SYAFFTHSNSKQAKD 498


>gi|254428150|ref|ZP_05041857.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
 gi|196194319|gb|EDX89278.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
          Length = 551

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 82/193 (42%), Gaps = 20/193 (10%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++   +L+ V TK+   +L E L  R +R   ++ ++   +R + ++ L+  +FD+L+ 
Sbjct: 243 AEEHDAVLVFVRTKQATLELAEQLNRRGLRAEALNGDIPQQQREKTVQRLKDKRFDLLIA 302

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +++  GLD+P    V   D    G   +    I   GRA R  ++ + +          
Sbjct: 303 TDVVARGLDVPRITHVVNYDMP--GDPEAYVHRIGRTGRAGRQGDAILFV---------- 350

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                   RRE+ +    +  I  QS+++  +  +D +  +  A     +       +  
Sbjct: 351 -------ARREQHVLRQIE-RITRQSIEKMALPSVDDLNAKRIARFQEQLAGFTSGANVD 402

Query: 759 KGKAHLKSLRKQM 771
           + +A +  LR  M
Sbjct: 403 EARALVNQLRDAM 415


>gi|126179703|ref|YP_001047668.1| DEAD/DEAH box helicase domain-containing protein [Methanoculleus
           marisnigri JR1]
 gi|125862497|gb|ABN57686.1| DEAD/DEAH box helicase domain protein [Methanoculleus marisnigri
           JR1]
          Length = 527

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 26/200 (13%)

Query: 496 TLAEYGFR--LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI--------IV 545
            + + GFR  +   +D+ P            TI+ SAT     LE  +          + 
Sbjct: 159 QMLDMGFREDIEKILDDTP--------RDRQTILFSATLPKPILEISKKFQKNPEFISVA 210

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
            + +    +    +E+RS R ++E +   +++        L+   TKR  +DLT +L  R
Sbjct: 211 RKEVTVPQIEQLYLEVRS-RDRLEILTRLLDMYDPD--LTLIFSNTKRGVDDLTTHLQAR 267

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
                 +H ++K   R  ++   R G  D+LV  ++   G+D+ +  LV   D       
Sbjct: 268 GYFAEGLHGDMKQTLRDRVMAKFRAGSIDILVATDVAARGIDVEDVDLVINYDV-----P 322

Query: 666 RSKTSLIQTIGRAARNVNSK 685
           +     I  IGR AR   + 
Sbjct: 323 QDIEYYIHRIGRTARAGRTG 342


>gi|260904108|ref|ZP_05912430.1| DNA/RNA helicase, superfamily II [Brevibacterium linens BL2]
          Length = 489

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   +  A  +G R ++   TKR A+ L   L +R  +V+ +H ++   +R + ++  R
Sbjct: 258 ELVARMLQAEGRG-RTIIFTRTKRTADKLAAELGDRGFQVKPLHGDLGQAQREKALKSFR 316

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+ DVLV  ++   G+DI +   V             + + +  IGR  R  N+ + +
Sbjct: 317 EGQVDVLVATDVAARGIDIDDVTHVVNY-----QCPDDEKTYVHRIGRTGRAGNTGIAV 370


>gi|295402561|ref|ZP_06812510.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112527|ref|YP_003990843.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
 gi|294975409|gb|EFG51038.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217628|gb|ADP76232.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
          Length = 465

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 101/264 (38%), Gaps = 28/264 (10%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +  T++ SAT   P     E+         ++   +  P ++      Q +  +D +   
Sbjct: 175 KRQTLLFSATMPEPIRRIAERFMNEPQIVKVKAKEMTVPNIQQYYLEVQEKKKFDILTRL 234

Query: 579 --AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              Q     ++   TKR  ++L E L  R      +H ++   +R+ ++R  + G  ++L
Sbjct: 235 LDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEIL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLDI     V   D       +   S +  IGR  R   + V +   T  + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKTGVAMTFVTPREI 349

Query: 697 IQ-LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
            Q   I+ TT+R+ ++++        P ++ E +       + +  AT      +     
Sbjct: 350 GQLHNIERTTKRKMERMK--------PPTLDEALEGQQRIAVEKLIATVETENLSFYKRA 401

Query: 756 SKKKGKAH---------LKSLRKQ 770
           +++  + H         +K L K+
Sbjct: 402 AEELLEEHDSVSLVAACIKMLTKE 425


>gi|229490988|ref|ZP_04384821.1| dead/deah box helicase [Rhodococcus erythropolis SK121]
 gi|229322104|gb|EEN87892.1| dead/deah box helicase [Rhodococcus erythropolis SK121]
          Length = 385

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 92/257 (35%), Gaps = 36/257 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +          ++SH+ + ++  +   +        + GF LP          E
Sbjct: 105 TPGRLLD--------LANQSHLILGKVGVLVLDEADEM---LDLGF-LPD--------IE 144

Query: 517 EWNCLRP---TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART----QV 568
               + P    T++ SAT PG         +     IR        V  R+++       
Sbjct: 145 RLMGMVPDKRQTMLFSATMPGPIITLARTFLTQPTHIRAEEAESSAVHDRTSQHIYRAHA 204

Query: 569 EDVYDEINLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            D  + +    Q   R   ++   TKR A+ + + L ER   V  +H ++  + R + ++
Sbjct: 205 LDKAEMVARVLQAEGRGATMIFTRTKRTAQKVADDLAERGFSVGAVHGDLGQIAREKALK 264

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R GK DVLV  ++   G+DI +   V             + + +  IGR  R   + +
Sbjct: 265 GFRNGKVDVLVATDVAARGIDIDDVTHVINY-----QCPEDEKTYVHRIGRTGRAGRTGI 319

Query: 687 -ILYADTITKSIQLAID 702
            +   D         ID
Sbjct: 320 AVTLVDWDDIPRWQLID 336


>gi|168702194|ref|ZP_02734471.1| transcription-repair coupling factor [Gemmata obscuriglobus UQM
           2246]
          Length = 1121

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 89/269 (33%), Gaps = 26/269 (9%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           ++   + +  +   + G  GS      A +   ++   +V+ P+ +       +  +F  
Sbjct: 29  EMRAALAAG-RSGTVDGAWGSSAALAAAALAAEVRGTLLVVVPHPVEVEPWAEDMASFLG 87

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
                 F  +  +       P +    + +     ++  ++        E    +VV  +
Sbjct: 88  TRPAV-FEMWESW-------PVSSNRGKLDPVTTSRLRLLQQLQRAGGAEGPPKVVVCGI 139

Query: 279 SCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
           S +   +      +     L  GD VE  EL   LV   YKR D     G F   G   +
Sbjct: 140 SAVCQPVPERADLAARGRTLAAGDIVEPSELAEWLVANGYKRVDAVEFPGEFSRRGGICD 199

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVT---------- 387
           IFP    D  +R+  FG+++E +  F   + + +   + + +                  
Sbjct: 200 IFPPDSPD-PFRLEFFGDEVEGLRTFAAGSQRSLEKKDRVTLLPTDQGTAGARPAKGHLA 258

Query: 388 ---PRPTLNTAMKYIKEELKMRLIELEKE 413
              P  +    ++    +L+ +     + 
Sbjct: 259 DYLPPDSWVVLIE--PRDLREQAKHFHER 285



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 78/204 (38%), Gaps = 23/204 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAA 579
            + ++ATP    L      I E     + L  PP + +   T +     + + + I    
Sbjct: 733 VLTMTATPIPRTLHASLLGIRE----ISNLETPPADRQPVETHITRWDDKQLRNAILREM 788

Query: 580 QQGLRI-LLTVLTKRMAEDLTE---YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +G ++  +    + + E  T+    + E  + V   H ++   +  + +      + D+
Sbjct: 789 NRGGQVYFVHNRVQDIYEVATKIEILVPEAKVTVG--HGQMDAHDLEKAMVRFVRKEADI 846

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  GLDIP    + I +AD  G       L Q  GR  R+ +     +     K
Sbjct: 847 LVATTIIESGLDIPNANTIFIDEADTYGL----ADLHQLRGRVGRSKHRAYAYFIVNPLK 902

Query: 696 SIQLAIDETTRRREKQLEHNKKHN 719
                ++ T +RR K +E   +  
Sbjct: 903 ----LLNPTAQRRLKAIEEFTELG 922



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLER 621
            + E        A   G ++ + V T  +AE      T+   E    V  ++      ++
Sbjct: 615 GKTEVAIRAAFKAVDSGKQVAVLVPTTVLAEQHFRTFTQRFAEYPFMVDAVNRFKSGAKQ 674

Query: 622 IEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSKT 669
            E ++ L  G+ DV+VG + LL + +   + GLV I +  + G    + 
Sbjct: 675 KETLKKLAAGEVDVIVGTHRLLSKDVTFKDLGLVVIDEEQRFGVEHKER 723


>gi|149204026|ref|ZP_01880994.1| DEAD/DEAH box helicase-like protein [Roseovarius sp. TM1035]
 gi|149142468|gb|EDM30513.1| DEAD/DEAH box helicase-like protein [Roseovarius sp. TM1035]
          Length = 429

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 70/190 (36%), Gaps = 13/190 (6%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   E      L+  + + V    +    V   V   +   + + + + + 
Sbjct: 176 QTMLFSATMPKQMEELAGSYLKHPKRVQVSPPGKAADKVTQEVHFVAKAAKPDLLIELL- 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            A  +    L+   TK  ++ L + L +    V  +H      +R   ++  R G   +L
Sbjct: 235 -AKHKSELALVFGRTKHGSDKLAKRLEQAGYSVAAIHGNKSQGQRERALKSFRDGHVKIL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT-- 694
           V  ++   GLDIP+   V   +        +    I    RA R+  +      D +   
Sbjct: 294 VATDVAARGLDIPDVKHVYNYELP--NVPDNYVHRIGRTARAGRDGAAIAFCAPDEMGEL 351

Query: 695 KSIQLAIDET 704
           K IQ  +  T
Sbjct: 352 KDIQKVLGTT 361


>gi|15807648|ref|NP_295347.1| RNA helicase [Deinococcus radiodurans R1]
          Length = 560

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 93/260 (35%), Gaps = 33/260 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ-VEDVYDEINLAAQQ- 581
            T++ SAT  +      +  + + +I     VD   E +S   Q VE +  ++  +  + 
Sbjct: 57  QTMLFSATLNNDIKRLSRNYLKDPLI-----VDMVGEGKSQAAQTVEHLKVKVGRSRTRV 111

Query: 582 ---------GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      + ++   TKR A++L   L  R +    +H ++   +R   +   R G+
Sbjct: 112 LADLLTVYNPEKAIVFTRTKREADELANELIHRGLESEALHGDLAQTQRERALGAFRSGR 171

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYA 690
             VLV  ++   GLDIPE  LV      +    +   S +   GR  R   +   +I+Y 
Sbjct: 172 VGVLVATDVAARGLDIPEVDLVV-----QYHLPQDPESYVHRSGRTGRAGRTGTAIIMYG 226

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINP----QSVKEKIMEVIDPILLEDAATTNI 746
           D   + +      T  R        ++    P    Q+      E++  +  E A     
Sbjct: 227 DRENREVMGLERITGVR------FKERPLPTPSEVAQASARASSEMVRRVDPEAAQGFQA 280

Query: 747 SIDAQQLSLSKKKGKAHLKS 766
             +     L  +     L  
Sbjct: 281 EAEQLFSELGLEALARALAK 300


>gi|297676837|ref|XP_002816330.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Pongo
           abelii]
          Length = 621

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 347 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 400

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 401 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 459

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 460 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 514

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 515 YVHRIGRTGRSGNTGIATTF------INKACDES 542


>gi|119481045|ref|XP_001260551.1| RNA helicase (Dbp), putative [Neosartorya fischeri NRRL 181]
 gi|134034066|sp|A1DGZ7|DBP2_NEOFI RecName: Full=ATP-dependent RNA helicase dbp2
 gi|119408705|gb|EAW18654.1| RNA helicase (Dbp), putative [Neosartorya fischeri NRRL 181]
          Length = 545

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 73/184 (39%), Gaps = 14/184 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T + SAT      +     + + I    G +D          VE+ S   + + +   +
Sbjct: 299 QTCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHL 358

Query: 576 NLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               + +G + L+   TKR+A+++T +L +       +H + +  ER  ++ + + GK  
Sbjct: 359 EKIMENRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSP 418

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           ++V  ++   G+D+ +   V   D     +  +    I  IGR  R       +   T  
Sbjct: 419 IMVATDVASRGIDVRDITHVLNYD-----YPNNSEDYIHRIGRTGRAGAKGTAITFFTTE 473

Query: 695 KSIQ 698
            S Q
Sbjct: 474 NSKQ 477


>gi|325184962|emb|CCA19454.1| DEAD box ATPdependent RNA helicase putative [Albugo laibachii Nc14]
          Length = 399

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 22/193 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              +VVSAT     L+     + E +        +   G+    V +     + +   D+
Sbjct: 200 TQVLVVSATMPQDVLDLTTKFMNEPVKVLVKRDELTLEGIKQFFVAVEQEEWKFDTLCDL 259

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TKR  + LT  + E N  V  MH ++   ER  I+++ R G
Sbjct: 260 YDTLTIT-----QAVIFCNTKRKVDWLTTKMREANFTVSSMHGDMPQRERDTIMQEFRSG 314

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
              VL+  ++   GLD+ +  LV   D        ++   I  IGR+ R     V I + 
Sbjct: 315 GSRVLITTDIWGRGLDVQQVSLVICYD-----LPNNRELYIHRIGRSGRFGRKGVAINFV 369

Query: 691 DTITKSIQLAIDE 703
                 I   I++
Sbjct: 370 KDEDVRILRDIEQ 382


>gi|156053343|ref|XP_001592598.1| hypothetical protein SS1G_06839 [Sclerotinia sclerotiorum 1980]
 gi|160419162|sp|A7ENE0|PRP5_SCLS1 RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|154704617|gb|EDO04356.1| hypothetical protein SS1G_06839 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1114

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 87/216 (40%), Gaps = 25/216 (11%)

Query: 512 PLRFEEWNCLRP--TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIR 562
           P   + +N +RP   TI+ SAT P   +   ++     VE ++    +V P +    E+R
Sbjct: 652 PQVMKVFNNIRPNRQTILFSATMPRIMDALAKKTLQSPVEIVVGGRSVVAPEITQIVEVR 711

Query: 563 SARTQVEDVYDEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
             + +   + + +     A +  R L+ V  +  A+DL + L  +      +H     ++
Sbjct: 712 EEKEKFHRLLELLGELYNADEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQVD 771

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R   I D + G   +++  ++   GLD+ +  LV   DA            +   GR  R
Sbjct: 772 RDSTIDDFKAGVVPIMIATSVAARGLDVKQLKLVVNFDA-----PNHLEDYVHRAGRTGR 826

Query: 681 NVNSKVIL---------YADTITKSIQLAIDETTRR 707
             N+   +         Y+  I K+++ +  E   R
Sbjct: 827 AGNTGTAVTFITEEQEQYSVGIAKALEQSGQEVPER 862


>gi|149012680|ref|ZP_01833656.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|168483538|ref|ZP_02708490.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1873-00]
 gi|169832933|ref|YP_001694988.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|194396853|ref|YP_002038215.1| ATP-dependent RNA helicase [Streptococcus pneumoniae G54]
 gi|225857209|ref|YP_002738720.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
 gi|225859340|ref|YP_002740850.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
 gi|147763280|gb|EDK70218.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|168995435|gb|ACA36047.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|172043152|gb|EDT51198.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1873-00]
 gi|194356520|gb|ACF54968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae G54]
 gi|225721382|gb|ACO17236.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
 gi|225724473|gb|ACO20325.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
          Length = 524

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 75/205 (36%), Gaps = 26/205 (12%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV 
Sbjct: 236 VAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R   S   I +        
Sbjct: 296 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGY 350

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVK-----------EKI-MEVIDPILLEDAATTN 745
              I+  T++R K         + P SV+           +KI  +  D  +  +     
Sbjct: 351 LQIIENLTKKRMK--------GLKPASVEESFQSKKQVALKKIERDFADETIRANFEKFG 402

Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQ 770
                     + ++   ++ SL  Q
Sbjct: 403 KDARKLAAEFTPEELAMYILSLTVQ 427


>gi|146180580|ref|XP_001021192.2| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila]
 gi|146144450|gb|EAS00947.2| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila SB210]
          Length = 602

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 9/168 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII----RPTGLVDPPVEIRSARTQVEDVYDEINL 577
              T++ S+T      +  +  +++ II    R   +    ++      Q E +   I+ 
Sbjct: 339 ARQTLLFSSTMPKKVQDFAKQALIDPIIVNVGRAGQVNLNVIQEVEYVKQEEKLQYLISC 398

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +    +L+        +D+ EYL  + I V  +H   K  ER + +++ +  + DVLV
Sbjct: 399 LQKTKPPVLIFCDKSNDVDDIHEYLLLKGIDVTSLHGGKKQEERTKAMKEFQQSQKDVLV 458

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             ++  +GLD P    V   D  KE       S +  IGR  R   + 
Sbjct: 459 ATDIGAKGLDFPNVQHVINFDMPKE-----IESYVHRIGRTGRLGKTG 501


>gi|313226956|emb|CBY22101.1| unnamed protein product [Oikopleura dioica]
          Length = 664

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    KR  + + EYL  + +    +H      +R+E  R  R G+ DVLV  ++  +
Sbjct: 464 VLIFAERKRAVDKVHEYLLLKGVECAAIHGGKDQEDRMEACRQFRGGEKDVLVATDIASK 523

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           GLD PE   V   D           + I  IGR  R  +  V      
Sbjct: 524 GLDFPEIEHVINYD-----MPEDIENYIHRIGRTGRGNHQGVATTFVN 566


>gi|224009464|ref|XP_002293690.1| eukaryotic translation initiation factor 4A [Thalassiosira
           pseudonana CCMP1335]
 gi|220970362|gb|EED88699.1| eukaryotic translation initiation factor 4A [Thalassiosira
           pseudonana CCMP1335]
          Length = 369

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 15/175 (8%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPT-----GLVDPPVEIRSARTQVEDVYDEI 575
              + SAT     LE  Q  +   V  +++       G+    + +     +++ + D  
Sbjct: 171 QVCLFSATMPLDVLEVTQRFMRDPVRILVKKDELTLEGIKQFYIAVEREEWKLDTLCDLY 230

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   + ++   T+R  + L E + ER+  V  MH ++   ER  I+R+ R G   V
Sbjct: 231 ETLTIT--QAIIYCNTRRKVDWLQEQMQERDFTVSCMHGDMDQRERDIIMREFRSGSSRV 288

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           L+  +LL  G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 289 LITTDLLARGIDVQQVSLVINFD-----LPTNRENYIHRIGRSGRFGRKGVAINF 338


>gi|84625712|ref|YP_453084.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|161898959|ref|YP_202940.2| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188574752|ref|YP_001911681.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|67461243|sp|Q5GUR8|RHLB_XANOR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|84369652|dbj|BAE70810.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519204|gb|ACD57149.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 574

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+              +  +             + + GF      D R L   
Sbjct: 141 TPGRLIDYV----------KQHKVVSLHACEICVLDEADRMFDLGFI----KDIRFLLRR 186

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIR---SARTQVED 570
                   T++ SAT     LE     + E    ++    +    V  R    +  + + 
Sbjct: 187 MPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDDEKQT 246

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +   ++ G R ++ V TK   E +   L     RV  +  +V   +R  ++   + 
Sbjct: 247 LLLGLLSRSE-GARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G+ ++LV  ++   GL I     V   D             +  IGR AR       I +
Sbjct: 306 GQLEILVATDVAARGLHIDGVKYVYNYD-----LPFDAEDYVHRIGRTARLGEEGDAISF 360

Query: 690 ADT 692
           A  
Sbjct: 361 ACE 363


>gi|307183175|gb|EFN70084.1| Probable ATP-dependent RNA helicase DDX17 [Camponotus floridanus]
          Length = 705

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 92/255 (36%), Gaps = 39/255 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ + +          + + + +   +  R     + GF         P   +
Sbjct: 239 TPGRLIDFLEKGTT--------NLRRCTYLVLDEADRM---LDMGFE--------PQIRK 279

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEI---RS 563
               +RP    ++ SAT         +  + + I    G +           +EI     
Sbjct: 280 IIEQIRPDRQVLMWSATWPKEVQALAEDFLTDYIQINIGSLSLAANHNIRQIIEICQEHE 339

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              ++  +  EI    ++G ++++ V TK+  +D+T+ +         +H +    ER  
Sbjct: 340 KEYKLSQLLREIG--TERGSKMIIFVETKKKVDDITKTIKRDGWSAISIHGDKSQPERDY 397

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++ + R GK  +LV  ++   GLD+ +   V   D     +  S    I  IGR  R  +
Sbjct: 398 VLSEFRNGKTMILVATDVAARGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGRCQS 452

Query: 684 SKVILYADTITKSIQ 698
           +       T   + Q
Sbjct: 453 AGTAYAYFTPNNARQ 467


>gi|257413647|ref|ZP_04743689.2| ATP-dependent RNA helicase, DEAD/DEAH family [Roseburia
           intestinalis L1-82]
 gi|257202759|gb|EEV01044.1| ATP-dependent RNA helicase, DEAD/DEAH family [Roseburia
           intestinalis L1-82]
          Length = 553

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 91/253 (35%), Gaps = 16/253 (6%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT   P     ++ Q   V   +    L  P +E      + +D  + +     
Sbjct: 204 QTVLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPNIEQYYYDVKRKDKIEVLTRLLD 263

Query: 581 --QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                  L+   TKRM ++LTE L  R      +H ++K  +R  ++R  R GK ++L+ 
Sbjct: 264 YYNPKLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILIA 323

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   G+D+ +   V   D       +     +  IGR  R   +    +     K + 
Sbjct: 324 TDVAARGIDVDDVEAVFNYD-----IPQDDEYYVHRIGRTGRAGRTG-RAFTFVKGKEVY 377

Query: 699 LAIDETTRRREKQLEHNK-----KHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
              D     + K +            I  + V E+I  +ID   L+D          +  
Sbjct: 378 KLKDIMRYCKTKIVAMPIPSTDDVAQIKAEKVMEEIGRIIDEENLKDTIDIIEKQINESD 437

Query: 754 SLSKKKGKAHLKS 766
             +     A LK 
Sbjct: 438 YTAMDIAAAFLKQ 450


>gi|320589963|gb|EFX02419.1| RNA helicase [Grosmannia clavigera kw1407]
          Length = 537

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 71/186 (38%), Gaps = 16/186 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T++ SAT            + + I    G +D          VE+ S   + + +   +
Sbjct: 297 QTLMWSATWPKEVRNLAADFLTDFIQVNIGSLDLSANHRITQIVEVVSEGDKRDRMLKHL 356

Query: 576 NLA---AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                  ++  ++L+   TKR+A+D+T  L +       +H + +  ER  ++   + GK
Sbjct: 357 EKVMDDKEKENKVLIFTGTKRVADDITRLLRQDGWPALSIHGDKQQNERDWVLDQFKTGK 416

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             ++V  ++   G+D+     V   D     +  +    I  IGR  R   +   +   T
Sbjct: 417 SPIMVATDVASRGIDVRNITHVINYD-----YPNNSEDYIHRIGRTGRAGANGTAITLFT 471

Query: 693 ITKSIQ 698
              + Q
Sbjct: 472 TDNAKQ 477


>gi|302831193|ref|XP_002947162.1| hypothetical protein VOLCADRAFT_103394 [Volvox carteri f.
           nagariensis]
 gi|300267569|gb|EFJ51752.1| hypothetical protein VOLCADRAFT_103394 [Volvox carteri f.
           nagariensis]
          Length = 481

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 69/186 (37%), Gaps = 14/186 (7%)

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
           V  T GS +L     I               ++  +   ++ ++  + + A  +  R+++
Sbjct: 269 VKVTIGSQDLAASHSITQRV---------DVIDPNARDGRLLELLQQYHGAKGRKNRVII 319

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
            VL K+ A  + + L  +  +   +H ++   +R + +   + G   +L+  ++   GLD
Sbjct: 320 FVLYKKEAPRVEQLLSRKGWKAVAIHGDISQQQRTDAVDKFKSGVVPLLIATDVAARGLD 379

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
           IP+  +V         F  +    +  IGR  R   + +             A +     
Sbjct: 380 IPDVEVVINYS-----FPLTTEDYVHRIGRTGRAGKTGIAHTFFCAGPDKPRAGELINVL 434

Query: 708 REKQLE 713
           RE   E
Sbjct: 435 REAGQE 440


>gi|291537686|emb|CBL10798.1| Superfamily II DNA and RNA helicases [Roseburia intestinalis M50/1]
          Length = 530

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 91/253 (35%), Gaps = 16/253 (6%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT   P     ++ Q   V   +    L  P +E      + +D  + +     
Sbjct: 181 QTVLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPNIEQYYYDVKRKDKIEVLTRLLD 240

Query: 581 --QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                  L+   TKRM ++LTE L  R      +H ++K  +R  ++R  R GK ++L+ 
Sbjct: 241 YYNPKLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILIA 300

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   G+D+ +   V   D       +     +  IGR  R   +    +     K + 
Sbjct: 301 TDVAARGIDVDDVEAVFNYD-----IPQDDEYYVHRIGRTGRAGRTG-RAFTFVKGKEVY 354

Query: 699 LAIDETTRRREKQLEHNK-----KHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
              D     + K +            I  + V E+I  +ID   L+D          +  
Sbjct: 355 KLKDIMRYCKTKIVAMPIPSTDDVAQIKAEKVMEEIGRIIDEENLKDTIDIIEKQINESD 414

Query: 754 SLSKKKGKAHLKS 766
             +     A LK 
Sbjct: 415 YTAMDIAAAFLKQ 427


>gi|170046392|ref|XP_001850751.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
 gi|167869172|gb|EDS32555.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
          Length = 641

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 89/256 (34%), Gaps = 33/256 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL-RF 515
            P  L ++        VD   VT  ++  +   +  R     + GF +P+          
Sbjct: 347 TPGRLLDF--------VDRQAVTFDRVKFVVLDEADRM---LDMGF-MPAVEKMMNHETM 394

Query: 516 EEWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLV--------DPPVEIRSART 566
           +        T++ SAT PG    E     +   I    G+V            E+   + 
Sbjct: 395 KSKEER--QTLMFSATFPG-QIQELAGQFLNNYIFVAVGIVGGASSDVEQNIYEVTKFQ- 450

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + + + +     +G   L+ V TKR A+ L   L E       +H +    ER E +R
Sbjct: 451 KRKKLEEILESNDPKG--TLVFVETKRNADYLASLLSETKFPTTSIHGDRLQREREEALR 508

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D + GK  +L+  ++   GLDI     V   D  K          +  IGR  R  N   
Sbjct: 509 DFKSGKMYILIATSVAARGLDIRNVAHVINYDLPK-----GIDDYVHRIGRTGRVGNKGR 563

Query: 687 ILYADTITKSIQLAID 702
                 +     +A D
Sbjct: 564 ATSFFDMENDSAIAGD 579


>gi|23098064|ref|NP_691530.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
 gi|22776289|dbj|BAC12565.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 495

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 96/257 (37%), Gaps = 16/257 (6%)

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           ++   P  I   AT    E ++ +    E  +         +     + + + + + ++ 
Sbjct: 181 FSATMPKEIRNIATTLMKEPKEVKVKAKEMTVENIDQYFIEI---PEKYKFDTLNNHLD- 236

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                   ++   TK+  +++ E L  R  R   +H ++   +R+ +++  + G+ DVLV
Sbjct: 237 -INSPELAIIFARTKKRVDEVAEGLQARGYRSEGIHGDLTQGKRMSVLKKFKQGRVDVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R       I +      +
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKMGEAISFITPREMA 350

Query: 697 IQLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
               I++TT+ + K++    +        Q   EK+   I+   L+        +  +  
Sbjct: 351 HLNLIEQTTKSKMKRMAPPTNQDARRGQQQVTIEKLKNAINEKDLKVYEDAAKELLDEYD 410

Query: 754 SLSKKKGKAHLKSLRKQ 770
           S++     A +  + K+
Sbjct: 411 SITV--VSAAISMMTKE 425


>gi|58259441|ref|XP_567133.1| ATP-dependent RNA helicase ded1 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134107531|ref|XP_777650.1| hypothetical protein CNBA7700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687306|sp|Q5KN36|DED1_CRYNE RecName: Full=ATP-dependent RNA helicase ded1
 gi|50260344|gb|EAL23003.1| hypothetical protein CNBA7700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223270|gb|AAW41314.1| ATP-dependent RNA helicase ded1, putative [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 637

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 62/169 (36%), Gaps = 11/169 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVEDVYDEINLA 578
            T++ SAT         +  + E I    G V    E     +     Q +       L 
Sbjct: 358 QTLMFSATFPREIQNLARSFLKEYIFLTVGRVGSTSENITQRVEYVDDQDKRSLLLDLLL 417

Query: 579 AQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A+Q G  IL+ V TKRMA+ L ++L  R      +H +    ER   +   + G+  +LV
Sbjct: 418 AEQSGGLILVFVETKRMADTLCDFLCSRRHNATSIHGDRTQREREAALYAFKSGRAPILV 477

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              +   GLDIP    V + D                IGR  R  N   
Sbjct: 478 ATAVAARGLDIPNVTHVILYD-----LPNDVAEYTHRIGRTGRAGNVGT 521


>gi|321250272|ref|XP_003191751.1| ATP-dependent RNA helicase ded1 [Cryptococcus gattii WM276]
 gi|317458218|gb|ADV19964.1| ATP-dependent RNA helicase ded1, putative [Cryptococcus gattii
           WM276]
          Length = 644

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 62/169 (36%), Gaps = 11/169 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVEDVYDEINLA 578
            T++ SAT         +  + E I    G V    E     +     Q +       L 
Sbjct: 358 QTLMFSATFPREIQNLARSFLKEYIFLTVGRVGSTSENITQRVEYVDDQDKRSLLLDLLL 417

Query: 579 AQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A+Q G  IL+ V TKRMA+ L ++L  R      +H +    ER   +   + G+  +LV
Sbjct: 418 AEQSGGLILVFVETKRMADTLCDFLCSRRHNATSIHGDRTQREREAALYAFKSGRAPILV 477

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
              +   GLDIP    V + D                IGR  R  N   
Sbjct: 478 ATAVAARGLDIPNVTHVILYD-----LPNDVAEYTHRIGRTGRAGNVGT 521


>gi|302334881|ref|YP_003800088.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
 gi|301318721|gb|ADK67208.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
          Length = 554

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 6/135 (4%)

Query: 564 ARTQVEDVYDEINLAAQ----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            + Q   + + +  A      Q  R+L+   TK  A+DL + L    I    MH++    
Sbjct: 359 TQGQKTQLLEALLSAGGAAGVQPERVLVFCRTKHRADDLDKRLKSAGISADVMHADRPQR 418

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            R   +   R G   VLV  +++  G+D+     V   D   +         I   GRA 
Sbjct: 419 ARERALEKFRAGTCQVLVATDVMSRGIDVSGIDAVVNYDVPMD--PEDYVHRIGRTGRAG 476

Query: 680 RNVNSKVILYADTIT 694
              ++   +  D I+
Sbjct: 477 ATGHAYTFVAPDEIS 491


>gi|224052117|ref|XP_002190981.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 708

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 91/255 (35%), Gaps = 30/255 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   ++ I + T      VE  +           + 
Sbjct: 311 PQTLLFSATCPHWVYDVAKKYMKTRYEQIDLIGKKTQKAATTVEHLAIECHWSQRAAVIG 370

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+ A +L           + +H ++   +R   ++  R G 
Sbjct: 371 DVIQVYSGSQGRTIVFCETKKEANELA-LNASIKQDCQSLHGDIPQKQREITLKGFRNGS 429

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV      K+       S I   GR  R   + + +    
Sbjct: 430 FKVLVATNVAARGLDIPEVDLVVQSSPPKDV-----ESYIHRSGRTGRAGRTGICICFY- 483

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                        R+ E QL H  +K  I  + V       I     +DA     S+   
Sbjct: 484 ------------QRKEEYQLRHVEQKAGITFKRVGVPTATDIIKASSKDAMRCLDSVPQT 531

Query: 752 QLSLSKKKGKAHLKS 766
            +   ++  +  +K 
Sbjct: 532 AIEYFRESAQLLIKE 546


>gi|328697425|ref|XP_003240334.1| PREDICTED: ATP-dependent RNA helicase p62-like isoform 2
           [Acyrthosiphon pisum]
          Length = 516

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 92/261 (35%), Gaps = 44/261 (16%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++         ES  T  Q       D      + + GF         P   +
Sbjct: 232 TPGRLLDFL---------ESRATNLQRCTYLVLDEA--DRMLDMGFE--------PQIRK 272

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIR----------PTGLVDPPVEI--- 561
               +RP    ++ SAT    E+++     +   I+             ++   V++   
Sbjct: 273 IIQQIRPDRQVLMWSAT-WPKEVQKLANDFLSDYIQLNVGSLTLSANHNILQN-VDVCQE 330

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
                ++ D+  +I    +   + ++   TKR  + +T  +     R   +H +    ER
Sbjct: 331 HEKEDKLMDLLQDIANMEEN--KTIIFAETKRKVDTITRKITNMGARAVGIHGDKSQSER 388

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             +++  R G+ ++LV  ++   GLD+ +   V   D     +  +    I  IGR  R+
Sbjct: 389 DHVLKQFRGGRANILVATDVAARGLDVDDVKFVINFD-----YPNNSEDYIHRIGRTGRS 443

Query: 682 VNSKVILYADTITKSIQLAID 702
                  YA     + + A D
Sbjct: 444 SQKGT-SYAFFTHSNSKQAKD 463


>gi|2734866|gb|AAB96360.1| RNA helicase [Takifugu rubripes]
          Length = 267

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 79/204 (38%), Gaps = 19/204 (9%)

Query: 513 LRFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSAR 565
           + FE        T++ +AT  P    L +        +      +P   V+  V + S  
Sbjct: 37  MNFESGKNKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVLLMSEG 96

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            + + + + ++   +    I++ V  K+  + L + L +       +H      +R   +
Sbjct: 97  EKRKKLLEVLSHGFEPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFAL 154

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S 
Sbjct: 155 SNLKAGAKDILVATDVAGRGIDIHDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSG 209

Query: 686 VILYADTITKS-----IQLAIDET 704
           V L   T   S     ++ AI E+
Sbjct: 210 VALTFLTKEDSAVFYDLKQAILES 233


>gi|30249765|ref|NP_841835.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30180802|emb|CAD85718.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 457

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 80/217 (36%), Gaps = 33/217 (15%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT           + +E+I          +++ +  T+++ +   ++       
Sbjct: 181 QTLLFSAT---------LDVAIEKIATRLLKAPKRIQVAAQHTKLDHIEQRMHYVDDLTH 231

Query: 584 R---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +                ++   TKR A+ L + L  +  +   MH ++   ER   +  L
Sbjct: 232 KNRLLDHLLRDTTIKQAIVFTATKRDADSLADNLSSQGHKAAAMHGDMTQRERTRTLTGL 291

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-I 687
           R G+  +LV  ++   G+DI +   V   D  K          +  IGR  R   S + +
Sbjct: 292 RQGRLKILVATDVAARGIDIADITHVINFDLPKF-----AEDYVHRIGRTGRAGASGIAV 346

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
            +A     +    I+  T  R    E +    I P++
Sbjct: 347 SFASGKDVAHLKRIERFTGNR---FEFHVIPGIEPRT 380


>gi|302818592|ref|XP_002990969.1| hypothetical protein SELMODRAFT_42150 [Selaginella moellendorffii]
 gi|300141300|gb|EFJ08013.1| hypothetical protein SELMODRAFT_42150 [Selaginella moellendorffii]
          Length = 421

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 63/176 (35%), Gaps = 20/176 (11%)

Query: 524 TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT         G +  +    + + ++   T  ++  V I   R Q  D    +
Sbjct: 212 QTLMFSATFPKKIQRLAGEFLRKDYVFLAIGEVGSSTSRIEQEV-IFVQRNQKYDCLGMV 270

Query: 576 NLAAQQG------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
               Q         + L+ V TK  A+DL  +L  R      +H +    ER   ++  +
Sbjct: 271 IDRQQMHGTKNNVRKTLVFVGTKLKADDLEIWLRSRGYVAIAIHGDKTQEERRRALKSFK 330

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            G   +LV   +   G+DIP+   V   D        +    +  IGR  R     
Sbjct: 331 SGSTPLLVATEVASRGIDIPDVSHVINFD-----LPTNIDDYVHRIGRTGRAGKRG 381


>gi|254674247|emb|CBA10031.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha275]
          Length = 462

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKDPEII--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|154298956|ref|XP_001549899.1| p68 RNA helicase [Botryotinia fuckeliana B05.10]
 gi|150857630|gb|EDN32822.1| p68 RNA helicase [Botryotinia fuckeliana B05.10]
          Length = 473

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 14/184 (7%)

Query: 524 TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T + SAT           +  E  Q  I    +     +   VE+ S   + + +   +
Sbjct: 241 QTCMWSATWPKEVRALASDYLNEFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTKHL 300

Query: 576 NLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               + +  +IL+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  
Sbjct: 301 EKIMEDKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSP 360

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           ++V  ++   G+D+     V   D     +  +    I  IGR  R       +   T  
Sbjct: 361 IMVATDVASRGIDVRNITHVFNYD-----YPNNSEDYIHRIGRTGRAGQKGTAITLFTTD 415

Query: 695 KSIQ 698
              Q
Sbjct: 416 NQKQ 419


>gi|119351039|gb|ABL63415.1| ATP-dependent RNA helicase [Rattus norvegicus]
          Length = 598

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 404 MRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 463

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K + +  
Sbjct: 464 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNRGKAVTFFT 518

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 519 EDDKPLLRSV 528


>gi|67969935|dbj|BAE01315.1| unnamed protein product [Macaca fascicularis]
          Length = 509

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 23/188 (12%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 200 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 249

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 250 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 309

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
             D     +  S    I  IGR AR+  +       T   +I+   D         +   
Sbjct: 310 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPN-NIKQVSD------LISVLRE 357

Query: 716 KKHNINPQ 723
               INP+
Sbjct: 358 ANQAINPK 365


>gi|28628026|gb|AAO17729.1| translation initition factor eIF4A [Apium graveolens Dulce Group]
          Length = 180

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+R  + LT+ +  R+  V   H ++    R  I+R+ R G   VL+  +LL  G
Sbjct: 53  VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 112

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAI 701
           +D+ +  LV   D           + +  IGR+ R     V I +       +   I
Sbjct: 113 IDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRKGVAINFVTKDDDRMLFDI 164


>gi|15677233|ref|NP_274386.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|7226614|gb|AAF41742.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|308389485|gb|ADO31805.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha710]
 gi|316984178|gb|EFV63156.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
 gi|325130443|gb|EGC53205.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           OX99.30304]
 gi|325136474|gb|EGC59080.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M0579]
 gi|325140412|gb|EGC62933.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           CU385]
 gi|325200011|gb|ADY95466.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
 gi|325201923|gb|ADY97377.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240149]
 gi|325208326|gb|ADZ03778.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           NZ-05/33]
          Length = 462

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKDPEII--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|300853611|ref|YP_003778595.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300433726|gb|ADK13493.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 496

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 95/254 (37%), Gaps = 25/254 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVE-----DVYDEINLA 578
           T++ SAT     L+ C   +   I       DP +  I     Q+E     D+ +++   
Sbjct: 195 TLLFSATIPQEILKLCAAYMNNPINVEIDAEDPVINRINQIYYQIEAYKKFDLLNKLVYT 254

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q+    ++   TK+  EDL   +  +      +H  +   ERI++++  + G+F  LV 
Sbjct: 255 -QRPESSMIFCRTKKNVEDLVLQMKGKGYSCSGLHGGMLQSERIDVMKRFKRGEFIFLVC 313

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   G+D+     +   D   E     K S +  IGR  R   S   +   T  +   
Sbjct: 314 TDVAARGIDVENITHIINYDIPME-----KESYVHRIGRTGRAGKSGTAITFVTPKE--Y 366

Query: 699 LAIDETTRRREKQLEHN--KKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
             ++E  +        N   +    P    ++ +E    I  E           +   L+
Sbjct: 367 RFLEEIEKF------FNLTIEKGTIP---SKEEVEKGKDIYKEKLKAAPKIKKDKSTKLN 417

Query: 757 KKKGKAHLKSLRKQ 770
           K   K ++ + +K+
Sbjct: 418 KDITKIYISAGKKK 431


>gi|206603692|gb|EDZ40172.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 444

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 69/188 (36%), Gaps = 14/188 (7%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRP-----TGLVDPPVEIRSARTQVEDVYDEI 575
            +++ SAT  P   EL          + + P       +    + +     ++  +   +
Sbjct: 179 QSLLFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVL 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +    +  ++++   TKR AEDL+  L +       +H +     R  ++   R G   V
Sbjct: 239 DEGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKV 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLDI     V   D       ++    +  IGR  R   +   + +     
Sbjct: 299 LVATDVAARGLDIDGITHVINYD-----LPQTAEDYVHRIGRTGRAGRTGRALSFFHPAD 353

Query: 695 KSIQLAID 702
           + I  +I+
Sbjct: 354 RDIVRSIE 361


>gi|114706869|ref|ZP_01439769.1| Superfamily II DNA and RNA helicase [Fulvimarina pelagi HTCC2506]
 gi|114537817|gb|EAU40941.1| Superfamily II DNA and RNA helicase [Fulvimarina pelagi HTCC2506]
          Length = 457

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 72/184 (39%), Gaps = 11/184 (5%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPT---GLVDPPVEIRSARTQVEDVYDEINLAA 579
            +++ SAT P   E    + +   Q +  T     V+   +   +  Q    +  I+  +
Sbjct: 184 QSMMFSATMPKPIEDLSKKILTNPQKVSVTPAVVTVEKIAQSVFSVPQRAKKHWLIDFVS 243

Query: 580 QQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +    RI++   TK  A  LT  L +  I+   +H       R + +   + G+ DVLV 
Sbjct: 244 KNDTGRIVVFTRTKHGANRLTSDLDKAGIQALAIHGNKSQTARQKALGAFQDGEIDVLVA 303

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            +++  G+ + +   V   D  +E       S +  IGR AR   S   I   D   ++ 
Sbjct: 304 TDIVARGIHVDDISHVVNFDLPEE-----PESYVHRIGRTARAGRSGQAIALVDPSERAK 358

Query: 698 QLAI 701
              I
Sbjct: 359 LKQI 362


>gi|281342094|gb|EFB17678.1| hypothetical protein PANDA_018093 [Ailuropoda melanoleuca]
          Length = 613

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 339 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 392

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 393 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 451

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 452 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 506

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 507 YVHRIGRTGRSGNTGIATTF------INKACDES 534


>gi|225861416|ref|YP_002742925.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230290|ref|ZP_06963971.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255231|ref|ZP_06978817.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503322|ref|YP_003725262.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727400|gb|ACO23251.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238917|gb|ADI70048.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327389770|gb|EGE88115.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA04375]
          Length = 524

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 75/205 (36%), Gaps = 26/205 (12%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV 
Sbjct: 236 VAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R   S   I +        
Sbjct: 296 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGY 350

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVK-----------EKI-MEVIDPILLEDAATTN 745
              I+  T++R K         + P SV+           +KI  +  D  +  +     
Sbjct: 351 LQIIENLTKKRMK--------GLKPASVEESFQSKKQVALKKIERDFADETIRANFEKFG 402

Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQ 770
                     + ++   ++ SL  Q
Sbjct: 403 KDARKLAAEFTPEELAMYILSLTVQ 427


>gi|215426565|ref|ZP_03424484.1| hypothetical protein MtubT9_09292 [Mycobacterium tuberculosis T92]
 gi|219557147|ref|ZP_03536223.1| hypothetical protein MtubT1_07530 [Mycobacterium tuberculosis T17]
 gi|260200303|ref|ZP_05767794.1| hypothetical protein MtubT4_09273 [Mycobacterium tuberculosis T46]
 gi|289442689|ref|ZP_06432433.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T46]
 gi|289569259|ref|ZP_06449486.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T17]
 gi|289749796|ref|ZP_06509174.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T92]
 gi|289415608|gb|EFD12848.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T46]
 gi|289543013|gb|EFD46661.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T17]
 gi|289690383|gb|EFD57812.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T92]
          Length = 563

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 67/189 (35%), Gaps = 9/189 (4%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEINLAAQQ 581
               + SAT      +     + +             E I  +  QV    D +    + 
Sbjct: 188 KQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDALTRVLEV 247

Query: 582 G--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
                +++ V TK+  E++ E L  R      +  +V   +R   I  LR G  D+LV  
Sbjct: 248 EPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVAT 307

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-SIQ 698
           ++   GLD+     V   D           S +  IGR  R   S   L   +  +  + 
Sbjct: 308 DVAARGLDVERISHVLNYD-----IPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLL 362

Query: 699 LAIDETTRR 707
            AI++ TR+
Sbjct: 363 KAIEKATRQ 371


>gi|160876048|ref|YP_001555364.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160861570|gb|ABX50104.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315268244|gb|ADT95097.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 427

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 106/316 (33%), Gaps = 47/316 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L + +  +++         + ++S +   +  R  +L   GF   L   +D  P +
Sbjct: 142 TPGRLLDLLSSNAI--------KLNRVSALVLDEADRMLSL---GFTEELAQVLDALPAK 190

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYD 573
                     T++ SAT      E    ++ + +  +     +  +  R           
Sbjct: 191 --------KQTLLFSATFPEEVRELTAKLLNDPLEYQFQSEQESTIHQRVITVNRPMKTA 242

Query: 574 EINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +    ++    + L+ V  K     L + L +R I     H +     R  ++   + G
Sbjct: 243 LLAHLIKEHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNG 302

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  VL+  ++   G+DI +  +V   D       RS    +  IGR+ R   + + +   
Sbjct: 303 EISVLIATDIAARGIDIDKLPVVINFD-----LPRSPADYMHRIGRSGRAGEAGLAVTLI 357

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
           +        + E         + NK          + + E I     +D     +   A+
Sbjct: 358 SHEDYHHFGVIE---------KKNK---------LKLVREQIVGFEADDEMPAELLEQAK 399

Query: 752 QLSLSKKKGKAHLKSL 767
            ++  +  GK   K L
Sbjct: 400 PVAKPEGTGKKKRKQL 415


>gi|126175005|ref|YP_001051154.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125998210|gb|ABN62285.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 427

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 106/316 (33%), Gaps = 47/316 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L + +  +++         + ++S +   +  R  +L   GF   L   +D  P +
Sbjct: 142 TPGRLLDLLSSNAI--------KLNRVSALVLDEADRMLSL---GFTEELAQVLDALPAK 190

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYD 573
                     T++ SAT      E    ++ + +  +     +  +  R           
Sbjct: 191 --------KQTLLFSATFPEEVRELTAKLLNDPLEYQFQSEQESTIHQRVITVNRPMKTA 242

Query: 574 EINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +    ++    + L+ V  K     L + L +R I     H +     R  ++   + G
Sbjct: 243 LLAHLIKEHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNG 302

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  VL+  ++   G+DI +  +V   D       RS    +  IGR+ R   + + +   
Sbjct: 303 EISVLIATDIAARGIDIDKLPVVINFD-----LPRSPADYMHRIGRSGRAGEAGLAVTLI 357

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
           +        + E         + NK          + + E I     +D     +   A+
Sbjct: 358 SHEDYHHFGVIE---------KKNK---------LKLVREQIVGFEADDEMPAELLEQAK 399

Query: 752 QLSLSKKKGKAHLKSL 767
            ++  +  GK   K L
Sbjct: 400 PVAKPEGTGKKKRKQL 415


>gi|226468796|emb|CAX76426.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum]
 gi|226468798|emb|CAX76427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum]
          Length = 622

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 94/262 (35%), Gaps = 27/262 (10%)

Query: 520 CLRPTTIVVSATPGSWELEQCQG----------IIVEQIIRPTGLVDPPVEIRSARTQVE 569
             +P T++ SAT  SW  +  +           +I EQ  + +  V     +    ++  
Sbjct: 188 SKKPQTLLFSATMPSWVSDISRNYLSNDALHLSLIDEQETKASTNVTHLALLCPYESRAA 247

Query: 570 DVYDEIN-LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            + D I      +  R ++    K+ A++L             +H +V   +R  +++  
Sbjct: 248 TLSDVIKVYCKSRESRCIVFCERKKDADELAAS-SVMPTDCHVLHGDVPQDKREFVLQKF 306

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-I 687
           R GK+  L+  N+   GLD+P   LV      ++         I   GR  R   S   I
Sbjct: 307 RDGKYRTLLTTNVAARGLDVPHVDLVIQCHPPRDV-----EDYIHRSGRTGRADRSGTSI 361

Query: 688 LYADTITKSIQLAID----ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743
            +     +S+   I+     T RR    +     H+I   +  E+I +    I     +T
Sbjct: 362 CFYTYKERSMLSKIENMAGITFRR----ISAPTIHDIT-AAWGEEISKTFSTIPKSTWST 416

Query: 744 TNISIDAQQLSLSKKKGKAHLK 765
                 +    LS+      +K
Sbjct: 417 FMPLAFSVADQLSQNSNSKKIK 438


>gi|238836384|gb|ACR61400.1| vasa [Ctenopharyngodon idella]
          Length = 670

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQ--CQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDV---YDEINL 577
            T++ SAT    E+++   + + V+ +    G+V     ++     QV+        + L
Sbjct: 421 QTLMFSAT-FPEEIQRLAAEFLKVDYLFLAVGVVGGACSDVEQTIIQVDQYSKREQLLEL 479

Query: 578 AAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               G  R ++ V TKR A+ +  +L +  I    +H + +  ER + + D R G+  VL
Sbjct: 480 LKTTGTERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRTGQCPVL 539

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITK 695
           V  ++   GLDI     V   D        +    +  IGR  R  N  + + + +  + 
Sbjct: 540 VATSVAARGLDIEHVQHVVNFD-----LPNNIDEYVHRIGRTGRCGNIGRAVSFFNPESD 594

Query: 696 S 696
           +
Sbjct: 595 T 595


>gi|296804970|ref|XP_002843312.1| ATP-dependent RNA helicase DHH1 [Arthroderma otae CBS 113480]
 gi|238845914|gb|EEQ35576.1| ATP-dependent RNA helicase DHH1 [Arthroderma otae CBS 113480]
          Length = 410

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 75/234 (32%), Gaps = 31/234 (13%)

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPG---------SWELEQCQGIIVEQIIRPTGLV 555
           P     + L       L   T  V  T G          +E+     + +  I +    V
Sbjct: 111 PKIAKTQALILVPTRELALQTSQVCKTLGKHLGQHMRNPYEINLMDELTLRGITQYYAFV 170

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           +   ++           + +    Q    I +   +    E L + + E      Y H+ 
Sbjct: 171 EERQKVH--------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHAR 221

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R  +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  I
Sbjct: 222 MLQHNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRI 276

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           GR+ R  +  + +          L   E     E Q          PQS+ +K+
Sbjct: 277 GRSGRFGHLGLAINLINWEDRYNLYKIEQELGTEIQ--------PIPQSIDKKL 322


>gi|255565933|ref|XP_002523955.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223536802|gb|EEF38442.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 564

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 91/261 (34%), Gaps = 44/261 (16%)

Query: 522 RPTTIVVSATPGSWELEQCQG-----IIVEQIIRPTGLVDPPVEI---RSARTQVEDVYD 573
           R  T++ SAT    E+E          +  ++ + +GL     ++    S   +++ +  
Sbjct: 300 RHQTLLFSAT-MPEEIETLAQEYLTTPVQVKVGKVSGLTANVSQVLKKVSESEKIDCLLG 358

Query: 574 EINLAAQQGLR-------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            +   A Q  R        ++ V  K   +++ E L  + +R   +H      ER   + 
Sbjct: 359 LLVEDASQAERADHPFPLTVVFVDRKARCDEVAEALVAQGLRAVALHGGRSQNEREAALH 418

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D R G  D+LV  ++   GLD+     V  LD  K     +    +  +GR  R  ++  
Sbjct: 419 DFRSGSTDILVATDVASRGLDVTGVTHVINLDLPK-----TMEDYVHRVGRTGRAGSAGQ 473

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
                T      +A                        +K+ I +V     +  A     
Sbjct: 474 ATSFYTDRDLFLVA-----------------------QIKKAIADVKSGNTVAFATGKVA 510

Query: 747 SIDAQQLSLSKKKGKAHLKSL 767
               ++ + S+K+ +  L  L
Sbjct: 511 RRKEREAAASQKEARNDLSKL 531


>gi|197105174|ref|YP_002130551.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
 gi|196478594|gb|ACG78122.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
          Length = 513

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 75/251 (29%), Gaps = 36/251 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR--LPSCMDNRPLR 514
            P  L ++     LL       T  QI  +   D      + + GF   L       P +
Sbjct: 130 TPGRLLDHFERGKLLM------TGVQIMVVDEADR-----MLDMGFIPDLERIFKLTPAK 178

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSAR 565
                     T+  SAT    E+ +     +   +R            +    V I SA 
Sbjct: 179 --------KQTLFFSAT-MPPEITRLTKQFLNDPVRIEASRPATTAETITQYLVRIPSAD 229

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            + +       +   +    ++    K   + + + L +       +H ++    R+  +
Sbjct: 230 PKAKRTALRELIGRAEINNGIVFCNRKTEVDIVAKSLKKHGFDAAAIHGDLDQATRMRTL 289

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R G+  +L   ++   GLDIP    V   D             +  IGR  R   + 
Sbjct: 290 ESFRNGELKLLCASDVAARGLDIPAVSHVFNFDV-----PHHADDYVHRIGRTGRAGRTG 344

Query: 686 VILYADTITKS 696
                 T   S
Sbjct: 345 EAFMIVTPADS 355


>gi|145601979|ref|XP_001403327.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|152013478|sp|A4QSS5|DBP2_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP2
 gi|145010431|gb|EDJ95087.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 548

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 72/186 (38%), Gaps = 16/186 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVY--- 572
            T++ SAT            + + I    G +D          VE+ S   + + +    
Sbjct: 305 QTLMWSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHM 364

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +++        +IL+ V TKR+A+++T +L +       +H + +  ER  ++   + GK
Sbjct: 365 EKVMDGKDSKNKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGK 424

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             ++V  ++   G+D+     V   D     +  +    I  IGR  R       +   T
Sbjct: 425 SPIMVATDVASRGIDVRNITHVLNYD-----YPNNSEDYIHRIGRTGRAGAKGTAITFFT 479

Query: 693 ITKSIQ 698
              S Q
Sbjct: 480 TENSKQ 485


>gi|124515178|gb|EAY56689.1| putative ATP-dependent helicase [Leptospirillum rubarum]
          Length = 444

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 69/188 (36%), Gaps = 14/188 (7%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRP-----TGLVDPPVEIRSARTQVEDVYDEI 575
            +++ SAT  P   EL          + + P       +    + +     ++  +   +
Sbjct: 179 QSLLFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVL 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +    +  ++++   TKR AEDL+  L +       +H +     R  ++   R G   V
Sbjct: 239 DEGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKV 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLDI     V   D       ++    +  IGR  R   +   + +     
Sbjct: 299 LVATDVAARGLDIDGITHVINYD-----LPQTAEDYVHRIGRTGRAGRTGRALSFFHPAD 353

Query: 695 KSIQLAID 702
           + I  +I+
Sbjct: 354 RDIVRSIE 361


>gi|123968740|ref|YP_001009598.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           AS9601]
 gi|123198850|gb|ABM70491.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           AS9601]
          Length = 593

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 95/245 (38%), Gaps = 16/245 (6%)

Query: 523 PTTIVVSATPGSWEL----EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
              ++ SAT    E+    ++      E +I+        +  +    Q     D +   
Sbjct: 227 KQMVLFSAT-MPSEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRI 285

Query: 579 AQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +     +++ V TK +   + E L      V  ++ ++   +R   +  L+ G  ++LV
Sbjct: 286 LELNNEGVIIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILV 345

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLD+    LV   D     F   K +    IGR  R   S   IL+ +   K 
Sbjct: 346 ATDVAARGLDVERIKLVVNYD-----FPFDKETYTHRIGRTGRAGRSGEAILFVNQREKH 400

Query: 697 IQLAIDETTRRR--EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
               ++ +TR +  E  +  NK   IN + +++ I  V +  L +D    N ++    L 
Sbjct: 401 FLRNLENSTRTKIEEINIPSNKI--INEKRMEKLIDNVNESFLAKDENEENKALIIDVLD 458

Query: 755 LSKKK 759
             K+K
Sbjct: 459 NLKEK 463


>gi|326430586|gb|EGD76156.1| DEAD box polypeptide 17 isoform 2 [Salpingoeca sp. ATCC 50818]
          Length = 629

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 71/182 (39%), Gaps = 16/182 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP---------PVEIRSARTQVEDVYDE 574
            T++ SAT    E+ +     + + ++ T   D           VE+   + +   + D 
Sbjct: 391 QTVMFSAT-WPQEVRRIAKDYLNRPVKVTVGSDDLAASKNVTQIVEVIDPKQKNGRLLDL 449

Query: 575 INLA-AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +      +  ++L+  L K+ A  L ++L  +    + +H ++   +R  ++++ + G+ 
Sbjct: 450 LRKYHKSRKNKVLVFALYKKEAARLEQFLQYKGYNTKAIHGDLSQGDRNRVLQEFKSGEV 509

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +++  ++   GLD+P+   V         F  +    +  IGR  R           T 
Sbjct: 510 PLMIATDVAARGLDVPDVEYVINY-----TFPLTIEEYVHRIGRTGRAGAKGTAHTLFTQ 564

Query: 694 TK 695
             
Sbjct: 565 HD 566


>gi|119351037|gb|ABL63414.1| ATP-dependent RNA helicase [Rattus norvegicus]
          Length = 598

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 404 MRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 463

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K + +  
Sbjct: 464 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNRGKAVTFFT 518

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 519 EDDKPLLRSV 528


>gi|58177858|gb|AAH89107.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Rattus norvegicus]
          Length = 598

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 404 MRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 463

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K + +  
Sbjct: 464 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNRGKAVTFFT 518

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 519 EDDKPLLRSV 528


>gi|31792446|ref|NP_854939.1| cold-shock DEAD-box protein A [Mycobacterium bovis AF2122/97]
 gi|121637182|ref|YP_977405.1| putative cold-shock dead-box protein a homolog deaD [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|215430135|ref|ZP_03428054.1| hypothetical protein MtubE_05528 [Mycobacterium tuberculosis
           EAS054]
 gi|224989657|ref|YP_002644344.1| putative cold-shock dead-box protein a homolog [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|260186187|ref|ZP_05763661.1| hypothetical protein MtubCP_09173 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289446844|ref|ZP_06436588.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289753325|ref|ZP_06512703.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis EAS054]
 gi|31618035|emb|CAD94146.1| PROBABLE COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG DEAD (ATP-dependent
           RNA helicase deaD homolog) [Mycobacterium bovis
           AF2122/97]
 gi|121492829|emb|CAL71300.1| Probable cold-shock dead-box protein a homolog deaD [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|224772770|dbj|BAH25576.1| putative cold-shock dead-box protein a homolog [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|289419802|gb|EFD17003.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289693912|gb|EFD61341.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis EAS054]
          Length = 563

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 67/189 (35%), Gaps = 9/189 (4%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEINLAAQQ 581
               + SAT      +     + +             E I  +  QV    D +    + 
Sbjct: 188 KQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDALTRVLEV 247

Query: 582 G--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
                +++ V TK+  E++ E L  R      +  +V   +R   I  LR G  D+LV  
Sbjct: 248 EPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVAT 307

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-SIQ 698
           ++   GLD+     V   D           S +  IGR  R   S   L   +  +  + 
Sbjct: 308 DVAARGLDVERISHVLNYD-----IPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLL 362

Query: 699 LAIDETTRR 707
            AI++ TR+
Sbjct: 363 KAIEKATRQ 371


>gi|226021|prf||1406327A growth regulated nuclear 68 protein
          Length = 594

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 23/188 (12%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 285 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 334

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 335 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 394

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
             D     +  S    I  IGR AR+  +       T   +I+   D         +   
Sbjct: 395 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPN-NIKQVSD------LISVLRE 442

Query: 716 KKHNINPQ 723
               INP+
Sbjct: 443 ANQAINPK 450


>gi|16758984|ref|NP_445977.1| probable ATP-dependent RNA helicase DDX52 [Rattus norvegicus]
 gi|34582286|sp|Q99PT0|DDX52_RAT RecName: Full=Probable ATP-dependent RNA helicase DDX52; AltName:
           Full=ATP-dependent RNA helicase ROK1-like; Short=rROK1L;
           AltName: Full=DEAD box protein 52
 gi|12862376|dbj|BAB32441.1| ROK1-like protein [Rattus norvegicus]
 gi|149053684|gb|EDM05501.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Rattus norvegicus]
          Length = 598

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 404 MRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 463

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K + +  
Sbjct: 464 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNRGKAVTFFT 518

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 519 EDDKPLLRSV 528


>gi|218887215|ref|YP_002436536.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758169|gb|ACL09068.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 531

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 69/170 (40%), Gaps = 16/170 (9%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVE--QIIRPTGLVDPP----VEIRSARTQVEDVYDEI 575
            T+  SAT  P   ++ Q      E  ++ +    V        E+R  + ++E +   +
Sbjct: 180 QTVFFSATMPPAILDMAQRFLKTPEFLKVTQKQVTVPSIEQIYYEVRPFQ-KLEALCRVL 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +L   +  R ++   TKR  ++LT++L  R  +   +H  +   +R  ++   R    ++
Sbjct: 239 DLYNPK--RAIVFCSTKRGVDELTQHLQGRGYQADGLHGNLNQSQRDRVMARFRSNGIEI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           LV  ++   G+D+ +   V   D        +    +  IGR  R   S 
Sbjct: 297 LVATDVAARGIDVDDVEAVVNYD-----IPNAVEHYVHRIGRTGRAGRSG 341


>gi|330804914|ref|XP_003290434.1| hypothetical protein DICPUDRAFT_37328 [Dictyostelium purpureum]
 gi|325079445|gb|EGC33045.1| hypothetical protein DICPUDRAFT_37328 [Dictyostelium purpureum]
          Length = 600

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 72/193 (37%), Gaps = 18/193 (9%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRP-----TGLVDPPVEIRSARTQVEDVYDEIN 576
            TI+ SAT  P      +       +II       +  +D  VE+R + T+   + + ++
Sbjct: 210 QTIMFSATFPPKVENAAKKILTKPLEIIAGGRSIVSSDIDQHVEVRPSETRFRRLIELLS 269

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +G  IL+    +   ++L   L     +   +H      +R E I D +     +L
Sbjct: 270 LWYHKGQ-ILIFTNRQETTDNLFRQLASSQYQCLSLHGSKDQTDRDETITDFKNKVKTIL 328

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK- 695
           +   L   GLDI +  LV   D             +  +GR  R  N        T  + 
Sbjct: 329 IATPLASRGLDIKDLNLVVNFDC-----PDHLEDYVHRVGRTGRAGNKGTAYTFITPEEE 383

Query: 696 ----SIQLAIDET 704
               SI  A++++
Sbjct: 384 RYSPSIIKALEQS 396


>gi|313668514|ref|YP_004048798.1| ATP-dependent RNA helicase [Neisseria lactamica ST-640]
 gi|313005976|emb|CBN87433.1| putative ATP-dependent RNA helicase [Neisseria lactamica 020-06]
          Length = 462

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKDPEVI--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|550329|emb|CAA57417.1| putative RNA helicase [Dictyostelium discoideum]
          Length = 582

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 94/257 (36%), Gaps = 32/257 (12%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRP-----TGLVDPPVEIRSARTQVEDVYDEIN 576
            TI+ SAT  P    + +       +II       +  ++  VE+R   T+   + + ++
Sbjct: 205 QTIMFSATFPPKVENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIELLS 264

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +   +G  IL+    +   ++L   L     +   +H      +R E I D +     +L
Sbjct: 265 IWYHKGQ-ILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTIL 323

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK- 695
           +   L   GLDI +  LV   D             +  +GR  R  N        T  + 
Sbjct: 324 IATPLASRGLDIKDLNLVVNFDC-----PDHLEDYVHRVGRTGRAGNRGTAYTFITPDEE 378

Query: 696 ----SIQLAIDETTRR-----REKQLEHNKKHNINPQSVKEKIMEV-IDPILLEDAATTN 745
               SI  A++++  +     R+    + KK        +++  +V + P          
Sbjct: 379 RFSSSIIKALEQSGSKVPDELRKLNDTYEKK--------RKEGKDVLLAPTGFTGRGHKF 430

Query: 746 ISIDAQQLSLSKKKGKA 762
            + +  + ++ +K+ + 
Sbjct: 431 DAAEEDKKNIERKQQRK 447


>gi|4689114|gb|AAD27766.1|AF077033_1 putative ATP-dependent RNA helicase ROK1 [Homo sapiens]
          Length = 598

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 402 VRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 461

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K I +  
Sbjct: 462 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITFFT 516

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 517 EDDKPLLRSV 526


>gi|168491523|ref|ZP_02715666.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC0288-04]
 gi|168493488|ref|ZP_02717631.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC3059-06]
 gi|182684538|ref|YP_001836285.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           CGSP14]
 gi|221232344|ref|YP_002511497.1| DEAD/DEAH box helicase [Streptococcus pneumoniae ATCC 700669]
 gi|225855026|ref|YP_002736538.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae JJA]
 gi|182629872|gb|ACB90820.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           CGSP14]
 gi|183574224|gb|EDT94752.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC0288-04]
 gi|183576330|gb|EDT96858.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC3059-06]
 gi|220674805|emb|CAR69378.1| DEAD box helicase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225724107|gb|ACO19960.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae JJA]
          Length = 524

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 75/205 (36%), Gaps = 26/205 (12%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV 
Sbjct: 236 VAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R   S   I +        
Sbjct: 296 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGY 350

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVK-----------EKI-MEVIDPILLEDAATTN 745
              I+  T++R K         + P SV+           +KI  +  D  +  +     
Sbjct: 351 LQIIENLTKKRMK--------GLKPASVEESFQSKKQVALKKIERDFADETIRANFEKFG 402

Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQ 770
                     + ++   ++ SL  Q
Sbjct: 403 KDARKLAAEFTPEELAMYILSLTVQ 427


>gi|156367199|ref|XP_001627306.1| predicted protein [Nematostella vectensis]
 gi|156214212|gb|EDO35206.1| predicted protein [Nematostella vectensis]
          Length = 669

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 79/226 (34%), Gaps = 42/226 (18%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIR----SARTQVEDVYD 573
              T++ SAT    E++      +E  I       G     +  +        +   + D
Sbjct: 383 IRQTLMFSAT-FPKEIQMLARDFLENYIFLAVGKVGSTSENITQKVVWVDEFDKRSFLLD 441

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +N +  Q L  L+ V TK+ A+ L  +L +       +H +    ER E +R  R G  
Sbjct: 442 LLNASGPQQL-TLVFVETKKGADALEMFLAKDGYYCTSIHGDRSQREREEALRTFRCGDT 500

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV   +   GLDIP    V   D             +  IGR  R  ++ +       
Sbjct: 501 PILVATAVAARGLDIPNVKHVINFD-----LPTDIEEYVHRIGRTGRVGHTGLATSF--- 552

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
                                N K+    ++V +++M++++    E
Sbjct: 553 --------------------FNHKN----KNVAKELMDILEESKQE 574


>gi|145345795|ref|XP_001417385.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577612|gb|ABO95678.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 480

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 70/191 (36%), Gaps = 20/191 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVE-IRSARTQVEDVYDE 574
            T++ SAT    E+++     ++  +            L+   VE + S   +   + D 
Sbjct: 238 QTMLFSAT-FPREIQRMASDFLDDYVFLTVGRVGSSHALITQSVERVTSYHEKSNMLLDL 296

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +          L+ V TKR A+ L ++LY+       +H +    ER   ++  R GK  
Sbjct: 297 VEAVPGL---TLVFVETKRGADQLEDFLYQNGKPATSIHGDRTQQEREAALKSFRAGKTP 353

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADT 692
           +LV  ++   GLDIP    V   D                IGR  R         L+ ++
Sbjct: 354 ILVATDVAARGLDIPHVTHVINFD-----LPSDIDDYTHRIGRTGRAGKKGRATALFLES 408

Query: 693 ITKSIQLAIDE 703
               +   + E
Sbjct: 409 KDGQMARPLTE 419


>gi|15901428|ref|NP_346032.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           TIGR4]
 gi|15903483|ref|NP_359033.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae R6]
 gi|111657434|ref|ZP_01408185.1| hypothetical protein SpneT_02001363 [Streptococcus pneumoniae
           TIGR4]
 gi|116516011|ref|YP_816872.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39]
 gi|148988638|ref|ZP_01820071.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|148993389|ref|ZP_01822906.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|148997346|ref|ZP_01824951.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|149003176|ref|ZP_01828072.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007498|ref|ZP_01831133.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP18-BS74]
 gi|168486852|ref|ZP_02711360.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1087-00]
 gi|168488692|ref|ZP_02712891.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae SP195]
 gi|168575216|ref|ZP_02721179.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae MLV-016]
 gi|237650716|ref|ZP_04524968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
           1974]
 gi|237821935|ref|ZP_04597780.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
           1974M2]
 gi|303256042|ref|ZP_07342065.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS455]
 gi|303260214|ref|ZP_07346186.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP-BS293]
 gi|303262605|ref|ZP_07348546.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265007|ref|ZP_07350922.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS397]
 gi|303266470|ref|ZP_07352358.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS457]
 gi|303269052|ref|ZP_07354834.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS458]
 gi|307068227|ref|YP_003877193.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
 gi|61223743|sp|P0A4D7|EXP9_STRPN RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
           Full=Exported protein 9
 gi|61223744|sp|P0A4D8|EXP9_STRR6 RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
           Full=Exported protein 9
 gi|14973078|gb|AAK75672.1| putative ATP-dependent RNA helicase [Streptococcus pneumoniae
           TIGR4]
 gi|15459096|gb|AAL00244.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076587|gb|ABJ54307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39]
 gi|147756401|gb|EDK63442.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|147758636|gb|EDK65633.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760857|gb|EDK67827.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP18-BS74]
 gi|147925839|gb|EDK76914.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|147927944|gb|EDK78964.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|183570214|gb|EDT90742.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1087-00]
 gi|183572869|gb|EDT93397.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae SP195]
 gi|183578956|gb|EDT99484.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae MLV-016]
 gi|301794592|emb|CBW37036.1| DEAD box helicase family protein [Streptococcus pneumoniae INV104]
 gi|301802300|emb|CBW35052.1| DEAD box helicase family protein [Streptococcus pneumoniae INV200]
 gi|302597002|gb|EFL64125.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS455]
 gi|302636322|gb|EFL66816.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638711|gb|EFL69174.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP-BS293]
 gi|302641442|gb|EFL71807.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS458]
 gi|302644048|gb|EFL74307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS457]
 gi|302645526|gb|EFL75758.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS397]
 gi|306409764|gb|ADM85191.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
 gi|332072430|gb|EGI82913.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17570]
 gi|332199626|gb|EGJ13701.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA41317]
 gi|332200146|gb|EGJ14219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA47368]
 gi|332201024|gb|EGJ15095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA47901]
          Length = 524

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 75/205 (36%), Gaps = 26/205 (12%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV 
Sbjct: 236 VAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R   S   I +        
Sbjct: 296 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGY 350

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVK-----------EKI-MEVIDPILLEDAATTN 745
              I+  T++R K         + P SV+           +KI  +  D  +  +     
Sbjct: 351 LQIIENLTKKRMK--------GLKPASVEESFQSKKQVALKKIERDFADETIRANFEKFG 402

Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQ 770
                     + ++   ++ SL  Q
Sbjct: 403 KDARKLAAEFTPEELAMYILSLTVQ 427


>gi|322384200|ref|ZP_08057910.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321151092|gb|EFX44409.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 486

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 96/260 (36%), Gaps = 22/260 (8%)

Query: 524 TTIVVSAT--PGSWELEQ-------CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT  P   +L            +I +Q+  P  +    +E+     Q  +    
Sbjct: 158 HTMLFSATMPPNIQKLAHQFLRNPQHVSVIPKQVSAPL-IAQAYIEVH--EKQKFEALSR 214

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +    +     ++   TKR  ++L+E L +R      +H ++   +R  ++R  R G  D
Sbjct: 215 LLD-MEAPELAIIFGRTKRRVDELSEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSID 273

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           VLV  ++   GLD+     V   D       +   S +  IGR  R         +    
Sbjct: 274 VLVATDVAARGLDVSGVSHVINFD-----LPQDPESYVHRIGRTGRAGKEGTAWTFVTPR 328

Query: 694 TKSIQLAIDETTRR---REKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                  I++ TR    R+      +      +   E+I+E+++    ++     I +  
Sbjct: 329 EIDHLHFIEKVTRHKISRKPLPSLAEAMEGKQKMTAERILELMEKDNHQEFKGVAIQLLE 388

Query: 751 QQLSLSKKKGKAHLKSLRKQ 770
           Q  S++       L +  K+
Sbjct: 389 QYDSVNLLAAALKLLTGEKK 408


>gi|255731175|ref|XP_002550512.1| eukaryotic initiation factor 4A-12 [Candida tropicalis MYA-3404]
 gi|240132469|gb|EER32027.1| eukaryotic initiation factor 4A-12 [Candida tropicalis MYA-3404]
          Length = 399

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 75/195 (38%), Gaps = 23/195 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             +VVSAT     LE       + +        I  +G+    V+      + +   D+Y
Sbjct: 201 QVVVVSATLSREVLEMTSKFTTDPVKILVKQDEISLSGIKQYYVQCEQEDWKFDTLCDLY 260

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TK     LT+ + ++N  V  MH ++K  ER  I+ D R G 
Sbjct: 261 DNLTIT-----QAVIFCNTKLKVNWLTDQMRKQNFTVVSMHGDMKQDERESIMNDFRTGN 315

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             VL+  ++   G+D+ +  LV   D         K + I  IGR+ R       +   T
Sbjct: 316 SRVLISTDVWARGIDVQQVSLVINYD-----LPTDKENYIHRIGRSGRFGRKGTAINLIT 370

Query: 693 ITKSIQLAIDETTRR 707
                   + E  R 
Sbjct: 371 KDDVS--TLKELERH 383


>gi|261400326|ref|ZP_05986451.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC
           23970]
 gi|269209952|gb|EEZ76407.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC
           23970]
          Length = 462

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKDPEVI--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDADIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|124268102|ref|YP_001022106.1| putative ATP-dependent RNA helicase [Methylibium petroleiphilum
           PM1]
 gi|124260877|gb|ABM95871.1| putative ATP-dependent RNA helicase [Methylibium petroleiphilum
           PM1]
          Length = 516

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 70/202 (34%), Gaps = 30/202 (14%)

Query: 522 RPTTIVVSAT---------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
           R  T++ SAT               PG  EL     +  + I +     D          
Sbjct: 271 RDQTMMFSATFAPRIMALASKLMRSPGRLELATAHDVHSD-ITQTLHWADN-------MG 322

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
             + + +   L   +  + ++   T+   E + E L ++      +H  +    R   ++
Sbjct: 323 HKQALLEH-WLRDAEVDQAVVFASTQVDTEAIAEALQQQGHSAVALHGAMPQAVRNRRLQ 381

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK- 685
           ++R G   VLV  ++   GLD+P    V        G        +  IGR  R   S  
Sbjct: 382 NVRDGHVRVLVATDVAARGLDVPSISHVINF-----GLPMKAEDYVHRIGRTGRAGRSGT 436

Query: 686 VILYADTITKSIQLAIDETTRR 707
            I  A+   +    AI+  TR+
Sbjct: 437 AITIAEHRERGKIRAIEAFTRQ 458


>gi|114667862|ref|XP_511433.2| PREDICTED: ATP-dependent RNA helicase ROK1 isoform 4 [Pan
           troglodytes]
          Length = 599

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 403 MRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 462

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K I +  
Sbjct: 463 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITFFT 517

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 518 EDDKPLLRSV 527


>gi|157127270|ref|XP_001654897.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|157127276|ref|XP_001654900.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108872965|gb|EAT37190.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108872968|gb|EAT37193.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 594

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 14/166 (8%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q ++        +E      Q+  + D ++     G +IL+   TKR  +
Sbjct: 329 LELSANHNITQYVK-------VIEEHEKNEQLGKLLDNLSARGPAG-KILIFSTTKRKCD 380

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            +T YL         MH +    ER   +   R     +LV  ++   GLD+    +V  
Sbjct: 381 QITSYLRRYGQDAVGMHGDKSQQERERALNRFRNSNSCILVATDVAARGLDVDGIKVVIN 440

Query: 657 LDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAI 701
            D     + +     +  IGR  R N   +   +  +  + +   +
Sbjct: 441 YD-----YPQQTEDYVHRIGRTGRSNATGEAYTFFTSNERKMAKEL 481


>gi|332847931|ref|XP_001173155.2| PREDICTED: probable ATP-dependent RNA helicase DDX52 isoform 2 [Pan
           troglodytes]
          Length = 599

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 403 MRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 462

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K I +  
Sbjct: 463 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITFFT 517

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 518 EDDKPLLRSV 527


>gi|312372006|gb|EFR20059.1| hypothetical protein AND_20736 [Anopheles darlingi]
          Length = 850

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TK+ A+ L E+LY  +  V  +H +    ER E +R  R G+  +LV   +   
Sbjct: 617 TLIFVETKKAADSLEEFLYSYDYPVTSIHGDRSQDEREEALRLFRCGRCPILVATAVAAR 676

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GLDIP    V   D   E         +  IGR  R  N     
Sbjct: 677 GLDIPNVKHVINFDLPSEV-----EEYVHRIGRTGRMGNLGTAT 715


>gi|262273976|ref|ZP_06051788.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
 gi|262221786|gb|EEY73099.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
          Length = 441

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 13/192 (6%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIR-PTGLVDPP---VEIRSAR-TQVEDVYD 573
           N  R  T++ SAT    ++ +    +++   R   G V+     +E R      ++    
Sbjct: 176 NHRRRQTLMFSATLDHQQVNEIAADMLKDPKRVAIGFVNEEHKDIEQRFFLCDHLDHKQA 235

Query: 574 EINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            ++   +Q    ++++   T+   + L  +  ER I+   +  ++    R  I+ +   G
Sbjct: 236 LLDRVMEQESYQQVMIFTATRADTDRLATWFVERGIKAVALSGDLSQSARNRIMNEFERG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
              VLV  ++   GLDI     V   D  K          +  IGR  R  N  + I + 
Sbjct: 296 LHKVLVTTDVASRGLDISNVSHVVNFDMPK-----HAEEYVHRIGRTGRAGNKGIAISFV 350

Query: 691 DTITKSIQLAID 702
                +    I+
Sbjct: 351 GPKDWNSFKNIE 362


>gi|194904159|ref|XP_001981012.1| GG23261 [Drosophila erecta]
 gi|190652715|gb|EDV49970.1| GG23261 [Drosophila erecta]
          Length = 709

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 75/207 (36%), Gaps = 17/207 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            TI+ SAT  PG   L Q       Q+      +  T  V   +++     +  +     
Sbjct: 469 QTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIQLLEDDKEKFNTIKSF 528

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   +I++    K  A+DL+  L       + +H     ++R + I D++ G   +
Sbjct: 529 VRNMSNTDKIIIFCGRKARADDLSSELTLDGFMTQCIHGNRDQIDREQAIADIKSGAVHI 588

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI +   V   D     F R+    +  +GR  R       +   T   
Sbjct: 589 LVATDVASRGLDIEDITHVINYD-----FPRNIEEYVHRVGRTGRAGRKGTSISFITRED 643

Query: 696 --SIQLAIDETTRRREKQLEHNKKHNI 720
               +  ID       +Q   ++ HN+
Sbjct: 644 WGMAKELIDILQE--AEQEVPDELHNM 668


>gi|160380700|sp|A6SFW7|DBP2_BOTFB RecName: Full=ATP-dependent RNA helicase dbp2
          Length = 514

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 14/184 (7%)

Query: 524 TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T + SAT           +  E  Q  I    +     +   VE+ S   + + +   +
Sbjct: 282 QTCMWSATWPKEVRALASDYLNEFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTKHL 341

Query: 576 NLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               + +  +IL+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  
Sbjct: 342 EKIMEDKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSP 401

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           ++V  ++   G+D+     V   D     +  +    I  IGR  R       +   T  
Sbjct: 402 IMVATDVASRGIDVRNITHVFNYD-----YPNNSEDYIHRIGRTGRAGQKGTAITLFTTD 456

Query: 695 KSIQ 698
              Q
Sbjct: 457 NQKQ 460


>gi|119578421|gb|EAW58017.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_g [Homo
           sapiens]
          Length = 304

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 75  NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 134

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 135 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 192

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 193 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 247

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 248 AITFLTKEDSAVFYELKQAILES 270


>gi|79313227|ref|NP_001030693.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|332641918|gb|AEE75439.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 415

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 18/194 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 203 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKE 262

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 263 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 320

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 321 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 375

Query: 685 KV-ILYADTITKSI 697
            V I +     + +
Sbjct: 376 GVAINFVTRDDERM 389


>gi|2500527|sp|Q61656|DDX5_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box RNA helicase DEAD1; Short=mDEAD1; AltName:
           Full=DEAD box protein 5; AltName: Full=RNA helicase p68
 gi|51263|emb|CAA46581.1| p68 RNA helicase [Mus musculus]
          Length = 614

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 23/188 (12%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 354

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 414

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
             D     +  S    I  IGR AR+  +       T   +I+   D         +   
Sbjct: 415 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPN-NIKQVSD------LISVLRE 462

Query: 716 KKHNINPQ 723
               INP+
Sbjct: 463 ANQAINPK 470


>gi|321252102|ref|XP_003192288.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
 gi|317458756|gb|ADV20501.1| pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
          Length = 1063

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 10/147 (6%)

Query: 555 VDPPVEIRSARTQVEDVYDEI-----NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           +D  VE+R   T+   + + +         +   R L+ V  +  A+DL   L +R    
Sbjct: 615 IDQRVEVRDGDTKFTRLLEILGEMGEEHKDEDDFRALIFVDRQESADDLFRELLQRGYVC 674

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H   + ++R E I++ + G   ++V  ++   GLD+ E  LV   DA          
Sbjct: 675 ASLHGGKEQVDRDEAIKNFKNGDVPIIVATSVAARGLDVKELKLVINYDA-----PNHME 729

Query: 670 SLIQTIGRAARNVNSKVILYADTITKS 696
             +   GR  R  N    +   T  + 
Sbjct: 730 DYVHRAGRTGRAGNKGTCITFITPEQE 756


>gi|315452882|ref|YP_004073152.1| transcription-repair coupling factor [Helicobacter felis ATCC
           49179]
 gi|315131934|emb|CBY82562.1| transcription-repair coupling factor [Helicobacter felis ATCC
           49179]
          Length = 988

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINE 253
           +  +++  +   A Q     + F P  A+  F     +Y         D      + ++ 
Sbjct: 15  KSEVLIVQDGAQARQASQVVRFFAPQKALFVFPELRAHY--------LDDMRAFSAEVST 66

Query: 254 QIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
            + ++R    ++   + DC++++ +S I      + +      ++  ++    EL + L 
Sbjct: 67  LLSQLRL-FYQAKEAKKDCLLITPLSAILH-PLPKPFLCQSFSIQALEACPLSELQTRLR 124

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRN 373
              Y+  D+  + G   V GD I+IF         R+S FG + E+I  F   T      
Sbjct: 125 AYGYEFVDMVELPGEVSVRGDIIDIFTPGSS-KPHRLSFFGEECEDIKTFDLATQLSDPE 183

Query: 374 VETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKE 413
           +        + +        T        L  RL  L+  
Sbjct: 184 LLECLEIPPALFSLTEQQRTT--------LLTRLENLQTH 215



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 68/181 (37%), Gaps = 15/181 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-----VYDEINLA 578
             + +SATP    L      I +     T     P     +RT V++     + + I   
Sbjct: 625 HLLSMSATPIPRTLSMALAQIKDISYLATPPESKP----PSRTFVKEKTPALLKEIILRE 680

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            ++  ++       +    + + L +   ++RV  +HS+    +   +I +   G F++L
Sbjct: 681 LRRKGQVFYIYNHIQSMPSVQKSLQDLLPHLRVEILHSKTPAAQAESLILEFAQGGFELL 740

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  +++  G+ +P    + I  AD  G       L Q  GR  R  +     +     + 
Sbjct: 741 LCTSIVESGIHLPNANTIIIDHADSFGL----ADLHQLRGRVGRGTHEGFCYFLVEDKQD 796

Query: 697 I 697
           +
Sbjct: 797 L 797


>gi|224142804|ref|XP_002324737.1| predicted protein [Populus trichocarpa]
 gi|118481206|gb|ABK92554.1| unknown [Populus trichocarpa]
 gi|222866171|gb|EEF03302.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 79/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 377 GVAINFVTKDDERMLSDIQR 396


>gi|15608393|ref|NP_215769.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis H37Rv]
 gi|15840699|ref|NP_335736.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|148661040|ref|YP_001282563.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis H37Ra]
 gi|148822470|ref|YP_001287224.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis F11]
 gi|215403092|ref|ZP_03415273.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis 02_1987]
 gi|215410888|ref|ZP_03419696.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215445431|ref|ZP_03432183.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis T85]
 gi|218752952|ref|ZP_03531748.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|253799702|ref|YP_003032703.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           1435]
 gi|254231510|ref|ZP_04924837.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis C]
 gi|254550260|ref|ZP_05140707.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289554958|ref|ZP_06444168.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           605]
 gi|289744998|ref|ZP_06504376.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           02_1987]
 gi|289757351|ref|ZP_06516729.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis T85]
 gi|289761405|ref|ZP_06520783.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|297633802|ref|ZP_06951582.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           4207]
 gi|297730788|ref|ZP_06959906.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           R506]
 gi|298524756|ref|ZP_07012165.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306775422|ref|ZP_07413759.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu001]
 gi|306781666|ref|ZP_07420003.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu002]
 gi|306788337|ref|ZP_07426659.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu004]
 gi|306792663|ref|ZP_07430965.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu005]
 gi|306797070|ref|ZP_07435372.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu006]
 gi|306802950|ref|ZP_07439618.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu008]
 gi|306807140|ref|ZP_07443808.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu007]
 gi|306967339|ref|ZP_07480000.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu009]
 gi|306971531|ref|ZP_07484192.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu010]
 gi|307079244|ref|ZP_07488414.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu011]
 gi|307083813|ref|ZP_07492926.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu012]
 gi|313658120|ref|ZP_07815000.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           V2475]
 gi|1706338|sp|Q11039|DEAD_MYCTU RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|1480333|emb|CAB00899.1| PROBABLE COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG DEAD (ATP-dependent
           RNA helicase deaD homolog) [Mycobacterium tuberculosis
           H37Rv]
 gi|13880887|gb|AAK45550.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|124600569|gb|EAY59579.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis C]
 gi|148505192|gb|ABQ73001.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis H37Ra]
 gi|148720997|gb|ABR05622.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis F11]
 gi|253321205|gb|ACT25808.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           1435]
 gi|289439590|gb|EFD22083.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           605]
 gi|289685526|gb|EFD53014.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           02_1987]
 gi|289708911|gb|EFD72927.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|289712915|gb|EFD76927.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis T85]
 gi|298494550|gb|EFI29844.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216042|gb|EFO75441.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu001]
 gi|308325627|gb|EFP14478.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu002]
 gi|308335025|gb|EFP23876.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu004]
 gi|308338833|gb|EFP27684.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu005]
 gi|308342518|gb|EFP31369.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu006]
 gi|308346383|gb|EFP35234.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu007]
 gi|308350324|gb|EFP39175.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu008]
 gi|308354954|gb|EFP43805.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu009]
 gi|308358901|gb|EFP47752.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu010]
 gi|308362864|gb|EFP51715.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu011]
 gi|308366530|gb|EFP55381.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu012]
 gi|323720210|gb|EGB29309.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CDC1551A]
 gi|326902876|gb|EGE49809.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           W-148]
 gi|328459448|gb|AEB04871.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           4207]
          Length = 563

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 67/189 (35%), Gaps = 9/189 (4%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEINLAAQQ 581
               + SAT      +     + +             E I  +  QV    D +    + 
Sbjct: 188 KQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDALTRVLEV 247

Query: 582 G--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
                +++ V TK+  E++ E L  R      +  +V   +R   I  LR G  D+LV  
Sbjct: 248 EPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVAT 307

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-SIQ 698
           ++   GLD+     V   D           S +  IGR  R   S   L   +  +  + 
Sbjct: 308 DVAARGLDVERISHVLNYD-----IPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLL 362

Query: 699 LAIDETTRR 707
            AI++ TR+
Sbjct: 363 KAIEKATRQ 371


>gi|163859073|ref|YP_001633371.1| putative ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
 gi|163262801|emb|CAP45104.1| putative ATP-dependent RNA helicase [Bordetella petrii]
          Length = 584

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 76/211 (36%), Gaps = 25/211 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE--------QIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      +    ++ E        Q  + T +    +    A  +++ +   +
Sbjct: 181 QTLLFSATLDGTVAKLAARMMREPQRIEMAGQKEKHTNITQSLLYADDASHKMQLLDHVL 240

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                +  + ++   TKR A+DL + L ++      +H ++   +R   +  L+ G+  +
Sbjct: 241 --RDAKLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLTQLQRGQLRI 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+D+         D             +  IGR  R           T   
Sbjct: 299 LVATDVAARGIDVQGISHAVNFD-----LPMQAEDYVHRIGRTGRAGRDGQAYTLATHA- 352

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
                     R + +++EH    +I P+++ 
Sbjct: 353 ---------ERHKVRRIEHYIGQSITPETIA 374


>gi|317477042|ref|ZP_07936284.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906835|gb|EFV28547.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 428

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 76/189 (40%), Gaps = 27/189 (14%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           ++      TI+ SAT                 E++       E+I++   +         
Sbjct: 175 KFLPKERQTIMFSATMPAKIQQLAKSILNNPAEVKLAVSKPAEKIVQAAYVC-------- 226

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q   +   +  A Q   R+++   +K   +++T+ L +  + V  MHS+++  +R E
Sbjct: 227 YENQKLGIIHSL-FAEQTPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREE 285

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++ + + G+ ++LV  +++  G+DI +  LV   D             +  IGR AR  N
Sbjct: 286 VMYEFKAGRINILVATDIVARGIDIDDIRLVINYDV-----PHDSEDYVHRIGRTARANN 340

Query: 684 SKVILYADT 692
             V L    
Sbjct: 341 DGVALTFVN 349


>gi|296201832|ref|XP_002748195.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 2
           [Callithrix jacchus]
          Length = 603

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 23/188 (12%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 294 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 343

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 344 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 403

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
             D     +  S    I  IGR AR+  +       T   +I+   D         +   
Sbjct: 404 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPN-NIKQVSD------LISVLRE 451

Query: 716 KKHNINPQ 723
               INP+
Sbjct: 452 ANQAINPK 459


>gi|256827018|ref|YP_003150977.1| DNA/RNA helicase, superfamily II [Cryptobacterium curtum DSM 15641]
 gi|256583161|gb|ACU94295.1| DNA/RNA helicase, superfamily II [Cryptobacterium curtum DSM 15641]
          Length = 551

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/325 (18%), Positives = 103/325 (31%), Gaps = 47/325 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L + + +D+          + Q+  +   +  R     + GF LP   D R +   
Sbjct: 130 TPGRLIDLMNQDAA--------HLNQVETLVLDEADRM---LDMGF-LP---DMRRIVAA 174

Query: 517 EWNCLRPTTIVVSATP---GSWELEQCQGIIVEQIIRPTGLVDPPVEIR--SARTQVEDV 571
                   T++ SAT        +       V   I   G     +E        + ++ 
Sbjct: 175 CPTQR--QTLLFSATIDSAIEDNMAHLLNNPVFVEIAHRGETADTIEQYRIPVDHRHKND 232

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                L  + G RI++   T+   +     L +    V  +HS+    +R   I  L  G
Sbjct: 233 LLIALLNERGGTRIIVFARTRHRVDTCVRKLRKAGFAVEPIHSDRSQNQRKRAIEALEAG 292

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           K D+LV  ++L  G+DIP    V  LD             +  IGR  R   +   +   
Sbjct: 293 KCDILVATDVLARGIDIPNVNYVVNLD-----MPDQVEDYVHRIGRTGRAGEAGCAISFV 347

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
           T       AI      R+ Q           + + + I E+        A+   ++  A 
Sbjct: 348 TPE---NKAIL-----RDIQ-----------KLIGKDIPEMSVESFDSSASDNALAAKAT 388

Query: 752 QLSLSKKKGKAHLKSLRKQMHLAAD 776
           + +       A       +    A 
Sbjct: 389 RANAQNDPELATAAR-EDKSRKKAK 412


>gi|239825779|ref|YP_002948403.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
 gi|239806072|gb|ACS23137.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
          Length = 466

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 101/264 (38%), Gaps = 28/264 (10%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +  T++ SAT   P     E+         ++   +  P ++      Q +  +D +   
Sbjct: 175 KRQTLLFSATMPEPIRRIAERFMNEPHIVKVKAKEMTVPNIQQYYLEVQEKKKFDILTRL 234

Query: 579 --AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              Q     ++   TKR  ++L E L  R      +H ++   +R+ ++R  + G  ++L
Sbjct: 235 LDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEIL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLDI     V   D       +   S +  IGR  R   + V +   T  + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKTGVAMTFVTPREI 349

Query: 697 IQ-LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
            Q   I+ TT+R+ ++++        P ++ E +       + +  AT      +     
Sbjct: 350 GQLHNIERTTKRKMERMK--------PPTLDEALEGQQRIAVEKLVATVESENLSFYKRA 401

Query: 756 SKKKGKAH---------LKSLRKQ 770
           +++  + H         +K L K+
Sbjct: 402 AEELLEEHDSVSLVAACIKMLTKE 425


>gi|167969576|ref|ZP_02551853.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis H37Ra]
          Length = 563

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 67/189 (35%), Gaps = 9/189 (4%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEINLAAQQ 581
               + SAT      +     + +             E I  +  QV    D +    + 
Sbjct: 188 KQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDALTRVLEV 247

Query: 582 G--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
                +++ V TK+  E++ E L  R      +  +V   +R   I  LR G  D+LV  
Sbjct: 248 EPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVAT 307

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-SIQ 698
           ++   GLD+     V   D           S +  IGR  R   S   L   +  +  + 
Sbjct: 308 DVAARGLDVERISHVLNYD-----IPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLL 362

Query: 699 LAIDETTRR 707
            AI++ TR+
Sbjct: 363 KAIEKATRQ 371


>gi|38569505|ref|NP_008941.2| probable ATP-dependent RNA helicase DDX52 [Homo sapiens]
 gi|296439375|sp|Q9Y2R4|DDX52_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX52; AltName:
           Full=ATP-dependent RNA helicase ROK1-like; AltName:
           Full=DEAD box protein 52
          Length = 599

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 403 MRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 462

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K I +  
Sbjct: 463 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITFFT 517

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 518 EDDKPLLRSV 527


>gi|254805163|ref|YP_003083384.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
 gi|254668705|emb|CBA06474.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
          Length = 462

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKDPEII--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|227542566|ref|ZP_03972615.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227181764|gb|EEI62736.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 718

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++ V TK   E+L E L  R    + ++ ++   +R   +  LR G+ D+LV  ++ 
Sbjct: 350 EAMIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDILVATDVA 409

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           S I  IGR  R   +   IL+     + +  +I
Sbjct: 410 ARGLDVDRISHVLNYD-----IPHDTESYIHRIGRTGRAGRTGEAILFVTPRERRMLRSI 464

Query: 702 DETT 705
           +  T
Sbjct: 465 ERVT 468


>gi|152981099|ref|YP_001355159.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281176|gb|ABR89586.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 778

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 4/123 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L   L  R      ++ +++  +R   I+ L+ GK D+LV  ++   
Sbjct: 249 MIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVATDVAAR 308

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+     V   D   +    S T  I   GRA R+     IL+     +++  AI+  
Sbjct: 309 GLDVERISHVINYDVPHD--PESYTHRIGRTGRAGRSGE--AILFIAPRERNLLKAIERA 364

Query: 705 TRR 707
           TR+
Sbjct: 365 TRQ 367


>gi|134097656|ref|YP_001103317.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133910279|emb|CAM00392.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 496

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 73/191 (38%), Gaps = 17/191 (8%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT PG         L Q   I  EQ     G +    +    R    D  + I 
Sbjct: 170 QTMLFSATMPGPIITLARTFLRQPTHIRAEQADA--GAIHERTKQFVYRAHAMDKTELIA 227

Query: 577 LAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            A Q   R   ++   TKR A+ L++ L ER      +H ++    R + +R  R GK D
Sbjct: 228 RAMQANGRGLSMIFTRTKRTAQKLSDELTERGFAAAAVHGDLGQGAREQALRAFRSGKVD 287

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           +LV  ++   G+D+     V  L          + + +  IGR  R     V I   D  
Sbjct: 288 ILVATDVAARGIDVGGVTHVVNLQC-----PDDEKTYVHRIGRTGRAGREGVAITLVDWD 342

Query: 694 TKSIQLAIDET 704
            +     I +T
Sbjct: 343 EEPRWKMISDT 353


>gi|317480121|ref|ZP_07939231.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
 gi|316903668|gb|EFV25512.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
          Length = 405

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 77/189 (40%), Gaps = 27/189 (14%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           ++      TI+ SAT                 E++       E+I++   +         
Sbjct: 152 KFLPKERQTIMFSATMPAKIQQLAGNILNNPAEVKLAVSKPAEKIVQAAYVC-------- 203

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q   +   +  A +   R+++   +K   +++T+ L +  + V  MHS+++  +R E
Sbjct: 204 YENQKLGIIRSL-FAEETPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREE 262

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++ + + G+ ++LV  +++  G+DI +  LV   D             +  IGR AR  N
Sbjct: 263 VMYEFKAGRINILVATDIVARGIDIDDIRLVINYDV-----PHDSEDYVHRIGRTARANN 317

Query: 684 SKVILYADT 692
             V +   +
Sbjct: 318 DGVAITFVS 326


>gi|228474931|ref|ZP_04059660.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
 gi|314935968|ref|ZP_07843318.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
 gi|228271163|gb|EEK12543.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
 gi|313655974|gb|EFS19716.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
          Length = 503

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+LV 
Sbjct: 237 VHQPELAIVFGRTKRRVDELTSALLTKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   GLDI     V   D       +   S    IGR  R     + + + + I    
Sbjct: 297 TDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDY 351

Query: 698 QLAIDETTRRREK 710
              I+E   RR K
Sbjct: 352 IRQIEEVNDRRMK 364


>gi|160888241|ref|ZP_02069244.1| hypothetical protein BACUNI_00650 [Bacteroides uniformis ATCC 8492]
 gi|156862187|gb|EDO55618.1| hypothetical protein BACUNI_00650 [Bacteroides uniformis ATCC 8492]
          Length = 428

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 77/189 (40%), Gaps = 27/189 (14%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           ++      TI+ SAT                 E++       E+I++   +         
Sbjct: 175 KFLPKERQTIMFSATMPAKIQQLAGNILNNPAEVKLAVSKPAEKIVQAAYVC-------- 226

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q   +   +  A +   R+++   +K   +++T+ L +  + V  MHS+++  +R E
Sbjct: 227 YENQKLGIIRSL-FAEETPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREE 285

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++ + + G+ ++LV  +++  G+DI +  LV   D             +  IGR AR  N
Sbjct: 286 VMYEFKAGRINILVATDIVARGIDIDDIRLVINYDV-----PHDSEDYVHRIGRTARANN 340

Query: 684 SKVILYADT 692
             V +   +
Sbjct: 341 DGVAITFVS 349


>gi|25083096|gb|AAN72041.1| putative RNA helicase [Arabidopsis thaliana]
          Length = 559

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 69/180 (38%), Gaps = 13/180 (7%)

Query: 524 TTIVVSAT-PGSWE--LEQCQGIIVEQIIRPTGLVDP----PVEIRSARTQVEDVYDEIN 576
            T++ SAT P   E    +     VE  +    +V+      VE+R    +   + + + 
Sbjct: 105 QTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 164

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +++G +IL+ V ++   + L   + + +     +H      +R   I D +    ++L
Sbjct: 165 EWSEKG-KILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLL 223

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ E  LV   DA            +  +GR  R       +   +   +
Sbjct: 224 IATSVAARGLDVKELELVVNFDA-----PNHYEDYVHRVGRTGRAGRKGCAVTFISEDDA 278


>gi|42521938|ref|NP_967318.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574468|emb|CAE77972.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 473

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 17/187 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SA+ GS      Q  +   ++         P   +   V       + + + DE+
Sbjct: 207 QTMMFSASFGSNVESIAQLFMKPDVVMVRSEKAEAPVESLKQKVLFLDRSMKNDRLLDEL 266

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           N        +++    +   E +  YL E       +H  +   +R  ++R  R G+  +
Sbjct: 267 NATRGG---VIVFTGNQENCEAVGNYLKEYGFSTDLIHGGLSQGQRNRVVRGFREGEIRI 323

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           +V  +LL  GLD+P    V   D             +  IGR AR       I +     
Sbjct: 324 VVATDLLARGLDVPHVDHVVNFD-----LPFQSEDFLHRIGRTARAGRGGEAITFVTPSD 378

Query: 695 KSIQLAI 701
             +   I
Sbjct: 379 TRMYAKI 385


>gi|88860256|ref|ZP_01134894.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
 gi|88817454|gb|EAR27271.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
          Length = 408

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 102/268 (38%), Gaps = 36/268 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y      +  +E H    +I  +   D      + + GFR     +   +  E
Sbjct: 130 TPGRLMDY------MKTEEFHAENVEILILDEADR-----MLDMGFR----SEMMKICDE 174

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIV--------EQIIRPTGLVDPPVEIRSARTQV 568
             N       + SAT     +E+    I+        E   +  G +   V +  +R   
Sbjct: 175 ATNRR--QCFLFSATLEGDSVERFADTILNDPALLEAESSRKEQGKILQWVHLADSRNHK 232

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            D+ + I  A     + ++ V T+   E+L   L  R+I+  ++  E+   +R+  + + 
Sbjct: 233 LDLLEAILKAEDMS-KAIVFVKTREKLEELVGLLVARDIKTAWLRGEMPQDKRMAAMANF 291

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G+ ++LV  ++   G+D+ +   V   D  +     +    +  IGR  R     V +
Sbjct: 292 QSGRANILVATDVAARGIDVTDISHVINYDMPR-----TADIYVHRIGRTGRAGKKGVAI 346

Query: 689 -----YADTITKSIQLAIDETTRRREKQ 711
                +   I K I+   ++  +RR  +
Sbjct: 347 SLVEAHDVGILKKIERYTEQNLKRRNIK 374


>gi|227822081|ref|YP_002826052.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
 gi|227341081|gb|ACP25299.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
          Length = 501

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 65/195 (33%), Gaps = 20/195 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
            T+  SAT      +     +      ++ RP    +  V  R      +D      L  
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPERVEVARPASTANT-VTQRFVAAHGKDYEKRAVLRD 238

Query: 579 --AQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               QG     ++    K+   +L   L      V  +H ++    R+ ++ + + G   
Sbjct: 239 LIRAQGELKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIQ 298

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT-- 692
           +LV  ++   GLDIP+   V   D             +  IGR  R   S       T  
Sbjct: 299 LLVASDVAARGLDIPDVSHVFNFDVPI-----HAEDYVHRIGRTGRAGRSGASFTIVTKR 353

Query: 693 ---ITKSIQLAIDET 704
               + +I+  I +T
Sbjct: 354 DTKFSDAIEKLIGQT 368


>gi|227487924|ref|ZP_03918240.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227092130|gb|EEI27442.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 718

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++ V TK   E+L E L  R    + ++ ++   +R   +  LR G+ D+LV  ++ 
Sbjct: 350 EAMIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDILVATDVA 409

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           S I  IGR  R   +   IL+     + +  +I
Sbjct: 410 ARGLDVDRISHVLNYD-----IPHDTESYIHRIGRTGRAGRTGEAILFVTPRERRMLRSI 464

Query: 702 DETT 705
           +  T
Sbjct: 465 ERVT 468


>gi|217972736|ref|YP_002357487.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217497871|gb|ACK46064.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 427

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 106/316 (33%), Gaps = 47/316 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L + +  +++         + ++S +   +  R  +L   GF   L   +D  P +
Sbjct: 142 TPGRLLDLLSSNAI--------KLNRVSALVLDEADRMLSL---GFTEELAQVLDALPAK 190

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYD 573
                     T++ SAT      E    ++ + +  +     +  +  R           
Sbjct: 191 --------KQTLLFSATFPEEVRELTAKLLNDPLEYQFQSEQESTIHQRVITVNRPMKTA 242

Query: 574 EINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +    ++    + L+ V  K     L + L +R I     H +     R  ++   + G
Sbjct: 243 LLAHLIKEHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNG 302

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  VL+  ++   G+DI +  +V   D       RS    +  IGR+ R   + + +   
Sbjct: 303 EISVLIATDIAARGIDIDKLPVVINFD-----LPRSPADYMHRIGRSGRAGEAGLAVTLI 357

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
           +        + E         + NK          + + E I     +D     +   A+
Sbjct: 358 SHEDYHHFGVIE---------KKNK---------LKLVREQIVGFEADDEMPAELLEQAK 399

Query: 752 QLSLSKKKGKAHLKSL 767
            ++  +  GK   K L
Sbjct: 400 PVAKPEGMGKKKRKQL 415


>gi|325928804|ref|ZP_08189971.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
 gi|325540777|gb|EGD12352.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
          Length = 571

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+              +  +             + + GF      D R L   
Sbjct: 141 TPGRLIDYV----------KQHKVVSLHACEICVLDEADRMFDLGFI----KDIRFLLRR 186

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIR---SARTQVED 570
                   T++ SAT     LE     + E    ++    +    V  R    +  + + 
Sbjct: 187 MPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEEKQT 246

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +   ++ G R ++ V TK   E +   L     RV  +  +V   +R  ++   + 
Sbjct: 247 LLLGLLSRSE-GARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G+ ++LV  ++   GL I     V   D             +  IGR AR       I +
Sbjct: 306 GQLEILVATDVAARGLHIDGVKYVYNYD-----LPFDAEDYVHRIGRTARLGEEGDAISF 360

Query: 690 ADT 692
           A  
Sbjct: 361 ACE 363


>gi|322488123|emb|CBZ23369.1| putative nucleolar RNA helicase II [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 684

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 88/251 (35%), Gaps = 23/251 (9%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG--LVDPPVEIRSARTQVE------D 570
                 T++ SAT   W          ++ I   G   V     I+  R +         
Sbjct: 270 EKPVHQTLLFSATVPEWVHTCSFIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEISSM 329

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D I + +    R L+   TK+   DL+  +    +  + +H +++  +R   ++  R 
Sbjct: 330 LADLIKVYSGAHGRTLVFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKSFRD 387

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            KF VL+  ++   GLD+P   LV               + I   GR  R     V +  
Sbjct: 388 NKFSVLIATDVAARGLDLPMVDLVIQCAP-----PTDIDAFIHRAGRTGRAGRKGVCVLL 442

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
               +  +  ++   R  + + +      + P   +E+I++ +     ED A        
Sbjct: 443 YQPRE--EYVVERIERHAKMKFD------VLPAPTREEILKAVARDAAEDLARVERRATN 494

Query: 751 QQLSLSKKKGK 761
             +  + +  K
Sbjct: 495 LFMDQAAELLK 505


>gi|294626526|ref|ZP_06705125.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599216|gb|EFF43354.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 570

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+              +  +             + + GF      D R L   
Sbjct: 141 TPGRLIDYV----------KQHKVVSLHACEICVLDEADRMFDLGFI----KDIRFLLRR 186

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIR---SARTQVED 570
                   T++ SAT     LE     + E    ++    +    V  R    +  + + 
Sbjct: 187 MPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEEKQT 246

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +   ++ G R ++ V TK   E +   L     RV  +  +V   +R  ++   + 
Sbjct: 247 LLLGLLSRSE-GARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G+ ++LV  ++   GL I     V   D             +  IGR AR       I +
Sbjct: 306 GQLEILVATDVAARGLHIDGVKYVYNYD-----LPFDAEDYVHRIGRTARLGEEGDAISF 360

Query: 690 ADT 692
           A  
Sbjct: 361 ACE 363


>gi|78049510|ref|YP_365685.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|123584009|sp|Q3BNH8|RHLB_XANC5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|78037940|emb|CAJ25685.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 573

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+              +  +             + + GF      D R L   
Sbjct: 141 TPGRLIDYV----------KQHKVVSLHACEICVLDEADRMFDLGFI----KDIRFLLRR 186

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIR---SARTQVED 570
                   T++ SAT     LE     + E    ++    +    V  R    +  + + 
Sbjct: 187 MPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEEKQT 246

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +   ++ G R ++ V TK   E +   L     RV  +  +V   +R  ++   + 
Sbjct: 247 LLLGLLSRSE-GARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G+ ++LV  ++   GL I     V   D             +  IGR AR       I +
Sbjct: 306 GQLEILVATDVAARGLHIDGVKYVYNYD-----LPFDAEDYVHRIGRTARLGEEGDAISF 360

Query: 690 ADT 692
           A  
Sbjct: 361 ACE 363


>gi|290543446|ref|NP_001166415.1| probable ATP-dependent RNA helicase DDX6 [Cavia porcellus]
 gi|81907597|sp|Q9WTM2|DDX6_CAVPO RecName: Full=Probable ATP-dependent RNA helicase DDX6; AltName:
           Full=DEAD box protein 6; AltName: Full=Oncogene RCK
           homolog
 gi|4760645|dbj|BAA77391.1| DEAD box protein [Cavia porcellus]
          Length = 472

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D             L    + + L +     L     + S
Sbjct: 231 MIVLDEADKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 279

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ + +    V    ++           + +    Q    I +  
Sbjct: 280 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFPRLQTNQSI-IFC 330

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI 
Sbjct: 331 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 390

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 391 AVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 440


>gi|332662165|ref|YP_004444953.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332330979|gb|AEE48080.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 451

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 82/208 (39%), Gaps = 15/208 (7%)

Query: 522 RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL-- 577
           +  T++ SAT      +L +      E +          V  R+     E     +    
Sbjct: 179 KRQTLLFSATMPESVMKLARQLTHNAESVSIALSKPAEGVTQRAYVVYEEQKLQLVTELL 238

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             ++G RI++   +K     L   L+ +N+ V  M S+V+  +R E +   R  K D++V
Sbjct: 239 KDRKGQRIVVFCSSKASVSSLYSKLHRKNLSVGQMSSDVEQDQREETMLAFRNSKIDIIV 298

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             +++  G+D+    LV   D  ++         +  +GR AR       +   +    +
Sbjct: 299 ATDVISRGIDVDGIDLVVNYDVPRD-----PEDYVHRVGRTARAERKGEAITLVSPGDQL 353

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSV 725
           +       RR EK ++ + +    PQ++
Sbjct: 354 RF------RRIEKLIDKDIEKLGPPQNL 375


>gi|332073919|gb|EGI84397.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA41301]
          Length = 524

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 75/205 (36%), Gaps = 26/205 (12%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVLV 
Sbjct: 236 VAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R   S   I +        
Sbjct: 296 TDIAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGY 350

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVK-----------EKI-MEVIDPILLEDAATTN 745
              I+  T++R K         + P SV+           +KI  +  D  +  +     
Sbjct: 351 LQIIENLTKKRMK--------GLKPASVEESFQSKKQVALKKIERDFADETIRANFEKFG 402

Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQ 770
                     + ++   ++ SL  Q
Sbjct: 403 KDARKLAAEFTPEELAMYILSLTVQ 427


>gi|302519357|ref|ZP_07271699.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
 gi|302428252|gb|EFL00068.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
          Length = 492

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 16/160 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D +      A +  R+LL + TK   + LTE+L    +R   +H      +R   +   +
Sbjct: 294 DKHAIATEIAARDGRVLLFLDTKHAVDRLTEHLLRSGVRAAALHGGKSQPQRTRTLEQFK 353

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ + +  LV  +D             +   GR AR   S  +  
Sbjct: 354 TGHVSVLVATNVAARGIHVDDLDLVVNVDP-----PTDHKDYLHRGGRTARAGRSGSVAT 408

Query: 690 ADTITK--SIQLAIDE------TTRRREKQLEHNKKHNIN 721
             T  +  S+   + E      TT+ R  +      H I 
Sbjct: 409 LVTPNQRRSMARLMAEVGVVPQTTQVRAGEEA---LHRIT 445


>gi|298368676|ref|ZP_06979994.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282679|gb|EFI24166.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 443

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKNPEII--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|318056420|ref|ZP_07975143.1| DEAD-box RNA helicase [Streptomyces sp. SA3_actG]
 gi|318077530|ref|ZP_07984862.1| DEAD-box RNA helicase [Streptomyces sp. SA3_actF]
          Length = 473

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 16/160 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D +      A +  R+LL + TK   + LTE+L    +R   +H      +R   +   +
Sbjct: 275 DKHAIATEIAARDGRVLLFLDTKHAVDRLTEHLLRSGVRAAALHGGKSQPQRTRTLEQFK 334

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ + +  LV  +D             +   GR AR   S  +  
Sbjct: 335 TGHVSVLVATNVAARGIHVDDLDLVVNVDP-----PTDHKDYLHRGGRTARAGRSGSVAT 389

Query: 690 ADTITK--SIQLAIDE------TTRRREKQLEHNKKHNIN 721
             T  +  S+   + E      TT+ R  +      H I 
Sbjct: 390 LVTPNQRRSMARLMAEVGVVPQTTQVRAGEEA---LHRIT 426


>gi|153001334|ref|YP_001367015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151365952|gb|ABS08952.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 427

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 106/317 (33%), Gaps = 49/317 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L + +  +++         + ++S +   +  R  +L   GF   L   +D  P +
Sbjct: 142 TPGRLLDLLSSNAI--------KLNRVSALVLDEADRMLSL---GFTEELAQVLDALPAK 190

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT--GLVDPPVEIRSARTQVEDVY 572
                     T++ SAT    E+ +    ++   +        +  +  R          
Sbjct: 191 --------KQTLLFSAT-FPEEVRELTAKLLNAPLEYQLQSEQESTIHQRVITVNRPMKT 241

Query: 573 DEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             +    ++    + L+ V  K     L + L +R I     H +     R  ++   + 
Sbjct: 242 ALLAHLIKEHEWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKN 301

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+  VL+  ++   G+DI +  +V   D       RS    +  IGR+ R   + + +  
Sbjct: 302 GEISVLIATDIAARGIDIDKLPVVINFD-----LPRSPADYMHRIGRSGRAGEAGLAVTL 356

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
            +        + E         + NK          + + E I     +D     +   A
Sbjct: 357 ISHEDYHHFGVIE---------KKNK---------LKLVREQIVGFEADDEMPAELLEQA 398

Query: 751 QQLSLSKKKGKAHLKSL 767
           + ++  +  GK   K L
Sbjct: 399 KPVAKPEGMGKKKRKQL 415


>gi|224153793|ref|XP_002337398.1| predicted protein [Populus trichocarpa]
 gi|222838972|gb|EEE77323.1| predicted protein [Populus trichocarpa]
          Length = 390

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 79/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 181 YDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 240

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 241 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDII 298

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 299 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 353

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +  +    +   I
Sbjct: 354 GVAINFVTSDDDRMLFDI 371


>gi|154293477|ref|XP_001547268.1| hypothetical protein BC1G_13890 [Botryotinia fuckeliana B05.10]
 gi|150845271|gb|EDN20464.1| hypothetical protein BC1G_13890 [Botryotinia fuckeliana B05.10]
          Length = 636

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR A+++ +YL+  ++    +HS+    ER + IR  R GK  +L+   +  
Sbjct: 421 RTIIFVNTKRSADEIDDYLFNNDLPCTSIHSDRTQREREDSIRAFRNGKMPILIATGVSA 480

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA-----DTITKSIQ 698
            GLD+     V   D                IGR  R  N  +         + I +++ 
Sbjct: 481 RGLDVHNVMHVINFDLPSNDHG-GIEEYTHRIGRTGRIGNMGLASSFYNDRNEDIAEALV 539

Query: 699 LAIDET 704
             + ET
Sbjct: 540 KTLLET 545


>gi|110834556|ref|YP_693415.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2]
 gi|110647667|emb|CAL17143.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
           borkumensis SK2]
          Length = 551

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 82/193 (42%), Gaps = 20/193 (10%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++   +L+ V TK+   +L E L  R +R   ++ ++   +R + ++ L+  +FD+L+ 
Sbjct: 243 AEEHDAVLVFVRTKQATLELAEQLNRRGLRAEALNGDIPQQQREKTVQRLKDKRFDLLIA 302

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +++  GLD+P    V   D    G   +    I   GRA R  ++ + +          
Sbjct: 303 TDVVARGLDVPRITHVVNYDMP--GDPEAYVHRIGRTGRAGRQGDAILFV---------- 350

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
                   RRE+ +    +  I  QS+++  +  +D +  +  A     +       +  
Sbjct: 351 -------ARREQHVLRQIE-RITRQSIEKMALPSVDDLNAKRIARFQEQLAGFTSGANVD 402

Query: 759 KGKAHLKSLRKQM 771
           + +A +  LR  M
Sbjct: 403 EARALVNQLRDAM 415


>gi|73965241|ref|XP_861914.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 15 [Canis
           familiaris]
          Length = 620

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 23/188 (12%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 311 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 360

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 361 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 420

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
             D     +  S    I  IGR AR+  +       T   +I+   D         +   
Sbjct: 421 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPN-NIKQVSD------LISVLRE 468

Query: 716 KKHNINPQ 723
               INP+
Sbjct: 469 ANQAINPK 476


>gi|296201830|ref|XP_002748194.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 1
           [Callithrix jacchus]
          Length = 614

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 23/188 (12%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 354

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 414

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
             D     +  S    I  IGR AR+  +       T   +I+   D         +   
Sbjct: 415 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPN-NIKQVSD------LISVLRE 462

Query: 716 KKHNINPQ 723
               INP+
Sbjct: 463 ANQAINPK 470


>gi|294665093|ref|ZP_06730397.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292605135|gb|EFF48482.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 570

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+              +  +             + + GF      D R L   
Sbjct: 141 TPGRLIDYV----------KQHKVVSLHACEICVLDEADRMFDLGFI----KDIRFLLRR 186

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIR---SARTQVED 570
                   T++ SAT     LE     + E    ++    +    V  R    +  + + 
Sbjct: 187 MPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEEKQT 246

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +   ++ G R ++ V TK   E +   L     RV  +  +V   +R  ++   + 
Sbjct: 247 LLLGLLSRSE-GARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G+ ++LV  ++   GL I     V   D             +  IGR AR       I +
Sbjct: 306 GQLEILVATDVAARGLHIDGVKYVYNYD-----LPFDAEDYVHRIGRTARLGEEGDAISF 360

Query: 690 ADT 692
           A  
Sbjct: 361 ACE 363


>gi|327351907|gb|EGE80764.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 1205

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 88/252 (34%), Gaps = 28/252 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     VE I+    +V P +    E+R+  T+   +   + 
Sbjct: 755 QTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAPEITQVVEVRNEDTKFVRLLALLG 814

Query: 577 LA----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                   +  R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 815 DLYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKAGV 874

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F +L+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 875 FPILIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 927

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K      P+ V++ +   I+ +       +      
Sbjct: 928 --------LTEDQERYSVDISKALKQSGQPVPEPVQKLVNSFIEKVKAGKEKASGSGFGG 979

Query: 751 QQLSLSKKKGKA 762
           + L    ++  A
Sbjct: 980 KGLERLDQERDA 991


>gi|325833432|ref|ZP_08165881.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
 gi|325485356|gb|EGC87825.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
          Length = 560

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 66/185 (35%), Gaps = 22/185 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTG-LVDPPVEIRSART-----QVEDVYDEINLA 578
           T +V ATP   +       I   I +  G L++ P  +  AR       VE     I   
Sbjct: 221 TTIVDATPADRQTLLFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANF 280

Query: 579 AQ-----------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            +              R+++   TK   ED  E L +   R   +HS+    +R   + +
Sbjct: 281 KKPELLQALLEEKGSDRVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDN 340

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            R G+  +LV  ++L  G+D+P+   V   D             +  IGR  R       
Sbjct: 341 FRRGRTSILVATDVLARGIDVPDVDHVINFD-----LPDMPEDYVHRIGRTGRAGEQGFA 395

Query: 688 LYADT 692
           +   T
Sbjct: 396 VSFVT 400


>gi|317132017|ref|YP_004091331.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315469996|gb|ADU26600.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 530

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 97/286 (33%), Gaps = 42/286 (14%)

Query: 524 TTIVVSAT----PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI--NL 577
            +++ SAT          +  +  +   +I  + L     E      +  D ++ +   L
Sbjct: 179 QSLLFSATMPMQIRKLAQQHMKPDVKNIVIAKSTLTATLTEQFYFEVKHRDRFETLCRIL 238

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              +    ++   TKR  ++L E +  R   V  MH ++   +R   ++  R G  D LV
Sbjct: 239 DVDEPESAIIFCRTKRGVDELVENMQSRGYIVEGMHGDMGQNQRQNTLKKFRDGNLDFLV 298

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   G+DI     V   +           S +  IGR  R   + +     T  + I
Sbjct: 299 ATDVAARGIDIENISHVINYE-----LPEDAESYVHRIGRTGRANRTGIAYSLVTPREYI 353

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
            L          KQ+E      +    +K K +  ++ I           +  +      
Sbjct: 354 IL----------KQIER-----VTHGHIKRKEIPTVEDIYEVKYKNVLTKVKEELEKNDF 398

Query: 758 KKGKAHLKSLRKQMH----LAA-------DNLNF-----EEAARIR 787
           +K K     L  + +     AA       + LNF     E+A  +R
Sbjct: 399 EKFKPLASELDDEYNLVDVAAALLKISFENELNFDYASSEKAREVR 444


>gi|257870943|ref|ZP_05650596.1| helicase [Enterococcus gallinarum EG2]
 gi|257805107|gb|EEV33929.1| helicase [Enterococcus gallinarum EG2]
          Length = 502

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 75/192 (39%), Gaps = 13/192 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +        E + I+   +    ++   +RS   +  D+   +  
Sbjct: 176 QTLLFSATMPPAIKSIGVKFMKNPEHVQIKAKEMTADLIDQYYVRSKDYEKFDIMTRLLD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L   L  R  +   +H ++   +R+ ++R  + G  D+LV
Sbjct: 236 -VQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R     + + +      S
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKGGISVTFVTPNEMS 349

Query: 697 IQLAIDETTRRR 708
               I+  T++R
Sbjct: 350 YLHVIENLTKKR 361


>gi|74149390|dbj|BAE22450.1| unnamed protein product [Mus musculus]
          Length = 615

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 23/188 (12%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 354

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 414

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
             D     +  S    I  IGR AR+  +       T   +I+   D         +   
Sbjct: 415 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPN-NIKQVSD------LISVLRE 462

Query: 716 KKHNINPQ 723
               INP+
Sbjct: 463 ANQAINPK 470


>gi|54301879|ref|YP_131872.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46915299|emb|CAG22072.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 455

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 86/252 (34%), Gaps = 40/252 (15%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEIN--LAA 579
             T++ SAT              EQ+      L++ PVEI   + Q  D    +      
Sbjct: 220 KQTLLFSAT------------FPEQVQTLTQELLNDPVEI---QLQSADASTLVQRVFTV 264

Query: 580 QQGLRI---------------LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
            +G +                L+ V  K   E L + L +R I     H +     R  +
Sbjct: 265 NKGEKTALLAHLIKQNEWRQALIFVNAKNSCEHLADKLSKRGITAEVFHGDKGQGARTRV 324

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +   + G+ +VL+  ++   GLDI +  +V   D       RS +  +  IGR+ R    
Sbjct: 325 LDAFKAGEIEVLIATDIAARGLDIEKLPVVINFD-----LPRSPSDYMHRIGRSGRAGEV 379

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
            + L            + E  ++ + +LE  +        V E  +    P+   + +  
Sbjct: 380 GLALSLIDHDDYHHFKVIE--KKNKIRLEREQVEGFEADEVNEAFLIANKPMAKPEGSGK 437

Query: 745 NISIDAQQLSLS 756
               +   L+  
Sbjct: 438 KKRKNKASLNED 449


>gi|332258725|ref|XP_003278445.1| PREDICTED: probable ATP-dependent RNA helicase DDX52 [Nomascus
           leucogenys]
          Length = 598

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 402 MRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 461

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K I +  
Sbjct: 462 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITFFT 516

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 517 EDDKPLLRSV 526


>gi|150376621|ref|YP_001313217.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150031168|gb|ABR63284.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae
           WSM419]
          Length = 498

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 76/215 (35%), Gaps = 20/215 (9%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE----QIIRP 551
            + + GF      D R  +  +       T++ SAT      E     + +    ++ RP
Sbjct: 160 QMLDLGFI----HDLR--KIAKLVPKNRQTLLFSATMPKLIAELAGEYLTDPVKVEVTRP 213

Query: 552 TGLVDPP---VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
               D     V     +     +  +   A   GL  L+   TK  AE L ++L +   +
Sbjct: 214 GKAADKVEQYVHFVPGKDLKTTILKQTLTANPDGLS-LVFSRTKHGAEKLMKHLDQVGFK 272

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H      +R   ++  R G+  VLV  ++   G+DIP    V   D          
Sbjct: 273 AASIHGNKSQGQRERALKAFRDGEIRVLVATDVAARGIDIPGVTHVYNYD-----LPEVA 327

Query: 669 TSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
            + +  IGR ARN    + I +       +   I+
Sbjct: 328 DAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDIE 362


>gi|218768385|ref|YP_002342897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
 gi|121052393|emb|CAM08725.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
 gi|319410631|emb|CBY91000.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
           2594]
          Length = 462

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKDPEII--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDADIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|323453007|gb|EGB08879.1| hypothetical protein AURANDRAFT_70153 [Aureococcus anophagefferens]
          Length = 306

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   T+R  + LT+ + +++  V  MH ++   ER  I+R+ R G   VL+  +LL 
Sbjct: 174 QAIIYCNTRRKVDWLTDGMTQKDFTVSAMHGDMDQKERDIIMREFRSGSSRVLITTDLLA 233

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            G+D+ +  LV   D        ++ + I  IGR+ R     V +   T   
Sbjct: 234 RGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGRFGRKGVAINFLTSGD 280


>gi|291537820|emb|CBL10931.1| Superfamily II DNA and RNA helicases [Roseburia intestinalis XB6B4]
          Length = 535

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 91/253 (35%), Gaps = 16/253 (6%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT   P     ++ Q   V   +    L  P +E      + +D  + +     
Sbjct: 186 QTVLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPNIEQYYYDVKRKDKIEVLTRLLD 245

Query: 581 --QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                  L+   TKRM ++LTE L  R      +H ++K  +R  ++R  R GK ++L+ 
Sbjct: 246 YYNPKLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILIA 305

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   G+D+ +   V   D       +     +  IGR  R   +    +     K + 
Sbjct: 306 TDVAARGIDVDDVEAVFNYD-----IPQDDEYYVHRIGRTGRAGRTG-RAFTFVKGKEVY 359

Query: 699 LAIDETTRRREKQLEHNK-----KHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
              D     + K +            I  + V E+I  +ID   L+D          +  
Sbjct: 360 KLKDIMRYCKTKIVAMPIPSTDDVAQIKAEKVMEEIGRIIDEENLKDTIDIIEKQINESD 419

Query: 754 SLSKKKGKAHLKS 766
             +     A LK 
Sbjct: 420 YTAMDIAAAFLKQ 432


>gi|266619246|ref|ZP_06112181.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
 gi|288869241|gb|EFD01540.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
          Length = 432

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 74/196 (37%), Gaps = 29/196 (14%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           +  T++ SAT    E++     + E+++    +    VE+    + V+ + D +    ++
Sbjct: 180 KKQTLLFSAT-MPPEIQ----ALTEKLLHNPAV----VEVTPVSSIVDLIEDSLYYVDKE 230

Query: 582 GLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
             R               L+   TK  A+ + ++L +  I    +H +     R + +  
Sbjct: 231 NKRALLVHLLKREAITSTLVFTRTKHGADRMAKFLTKNRINAAAIHGDKSQGARQKALSQ 290

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKV 686
            + G   VL   ++   G+DI E   V   D           + +  IGR  R     + 
Sbjct: 291 FKAGTVRVLAATDIAARGIDIEELSCVINFD-----LPNVPETYVHRIGRTGRAGLGGRA 345

Query: 687 ILYADTITKSIQLAID 702
           I ++D   K+    I+
Sbjct: 346 ISFSDIEEKAYVEDIE 361


>gi|188588593|ref|YP_001920789.1| cold-shock deAd box protein a [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498874|gb|ACD52010.1| cold-shock deAd box protein a [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 367

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE----- 574
             +  T+  SAT  S   +     +++ +     +  P + +   + QV +  D      
Sbjct: 172 SKKHQTLCFSATMDSQVKKLAYRYMIDPL--FIDIKSPTIAVDKIKQQVVETTDRWKQDS 229

Query: 575 --INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               L        ++   TKR A+ L   L+++ +  + +HS+V   +R  I++  R   
Sbjct: 230 LCATLQEDNPFMAIIFCRTKRRADVLEIALHQKGLNCQKIHSDVPQAKRERIMKSFRNAD 289

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
              L+  ++   G+DI     +   D        +  S I  IGR  R        ++  
Sbjct: 290 IQYLIATDVAARGIDISGVSHIYNYDT-----PETPESYIHRIGRTGRAGEDGYTCMFVA 344

Query: 692 TITKSIQLAIDE----TTRRREK 710
               S+  AI+     T  RRE 
Sbjct: 345 PKDSSLLNAIETKLGFTIPRREI 367


>gi|157423111|gb|AAI53692.1| LOC549967 protein [Xenopus (Silurana) tropicalis]
          Length = 319

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 78/205 (38%), Gaps = 23/205 (11%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 90  NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSEAE 149

Query: 567 QVEDVYDEINLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           + + +   +    ++G    I++ V  K+  + L + L +       +H      +R   
Sbjct: 150 KRKKLLAIL----EKGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFA 205

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S
Sbjct: 206 LSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKS 260

Query: 685 KVILYADTITKS-----IQLAIDET 704
            V +   T   S     ++ AI E+
Sbjct: 261 GVAITFLTKEDSSVFYDLKQAILES 285


>gi|147834872|emb|CAN70196.1| hypothetical protein VITISV_040309 [Vitis vinifera]
          Length = 410

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 377 GVAINFVTRDDERMLFDIQR 396


>gi|121715524|ref|XP_001275371.1| RNA helicase (Dbp), putative [Aspergillus clavatus NRRL 1]
 gi|134034064|sp|A1C6C4|DBP2_ASPCL RecName: Full=ATP-dependent RNA helicase dbp2
 gi|119403528|gb|EAW13945.1| RNA helicase (Dbp), putative [Aspergillus clavatus NRRL 1]
          Length = 549

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 73/185 (39%), Gaps = 16/185 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T + SAT    E+ Q     +   I+             +   VE+ S   + + +   
Sbjct: 305 QTCMWSAT-WPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKH 363

Query: 575 INLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +    + +  +IL+   TKR+A+++T +L +       +H + +  ER  ++ + + GK 
Sbjct: 364 LEKIMEDRSNKILIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKAGKS 423

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+ +   V   D     +  +    I  IGR  R       +   T 
Sbjct: 424 PIMVATDVASRGIDVRDITHVLNYD-----YPNNSEDYIHRIGRTGRAGAKGTAITFFTT 478

Query: 694 TKSIQ 698
             S Q
Sbjct: 479 DNSKQ 483


>gi|302766257|ref|XP_002966549.1| hypothetical protein SELMODRAFT_230807 [Selaginella moellendorffii]
 gi|300165969|gb|EFJ32576.1| hypothetical protein SELMODRAFT_230807 [Selaginella moellendorffii]
          Length = 581

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 76/205 (37%), Gaps = 15/205 (7%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII----RP 551
            L + GF          L+F+        T++ SAT      E  +G +V+ ++    R 
Sbjct: 310 RLCDSGFEDDIRKVMDHLKFQR------QTLLFSATMPRKIQEFARGALVKPVVVNVARA 363

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
                  V+      Q  ++   +    Q    +L+   +K   + + EYL  + + V  
Sbjct: 364 GAASLDVVQQVEFVKQEAEMVYLLECLQQTPPPVLIFCESKGEVDSIYEYLVLKGVEVVS 423

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +H      ER + I   + G+ DVLV  ++  +GLD P    V   D   E       + 
Sbjct: 424 IHGGKDQEERQDAITKFKQGRKDVLVATDVASKGLDFPSIQHVINYDMPSE-----IENY 478

Query: 672 IQTIGRAARNVNSKVILYADTITKS 696
           +  IGR  R   + +        +S
Sbjct: 479 VHRIGRTGRCGKTGIATTFINSRQS 503


>gi|109114658|ref|XP_001112113.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like [Macaca
           mulatta]
          Length = 599

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R G+
Sbjct: 403 MRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGR 462

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K I +  
Sbjct: 463 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITFFT 517

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 518 EDDKPLLRSV 527


>gi|15889136|ref|NP_354817.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
 gi|15156946|gb|AAK87602.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 503

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 17/190 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVED------VYD 573
            T+  SAT      +     +      ++ +P+      V  R      +D      + D
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKT-VTQRIVAAHNKDYEKRAVLRD 238

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +     +    ++    K+   DL   L      V  +H ++    R  ++++ R G+ 
Sbjct: 239 LVRAEEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQL 298

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIP+   V   D             +  IGR  R   S       T 
Sbjct: 299 TLLVASDVAARGLDIPDVSHVFNFDVPI-----HAEDYVHRIGRTGRAGRSGKAFTLVTK 353

Query: 694 TKSIQL-AID 702
           + +  L AI+
Sbjct: 354 SDAKYLDAIE 363


>gi|71021341|ref|XP_760901.1| hypothetical protein UM04754.1 [Ustilago maydis 521]
 gi|46100997|gb|EAK86230.1| hypothetical protein UM04754.1 [Ustilago maydis 521]
          Length = 1448

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 81/226 (35%), Gaps = 30/226 (13%)

Query: 496  TLAEYGF-----RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             L E GF      + +   +  LR   ++   P         G  E+ +   I   ++I 
Sbjct: 1155 RLLEDGFLQQTDSILAACSHPQLRKALFSATLPA--------GVEEMAKTFMIDECRVIV 1206

Query: 551  PTG------LVDPPVEIRSARTQVEDVYDEINLAAQQGLR--ILLTVLTKRMAEDLTEYL 602
             T       +      + S   ++  +   I    Q GL+  +LL V +   A+DL   L
Sbjct: 1207 GTKDSATETIQQELQFVGSEDGKLHALRSLIL---QGGLKPPVLLFVQSIERAKDLFHEL 1263

Query: 603  YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
                + V  +HSE   L+R  +I   + G   VL+   L+  G+D     LV   D    
Sbjct: 1264 VYDGLHVDVIHSERPKLQRERVISAFKRGDIWVLICTELMARGIDFKGVQLVINYD---- 1319

Query: 663  GFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAIDETTRR 707
             F +S  S I  IGR  R     + I Y           +    R+
Sbjct: 1320 -FPQSVQSYIHRIGRTGRAGKQGRAITYFTKEDAPHLKTVVNVMRQ 1364


>gi|325142563|gb|EGC64962.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           961-5945]
 gi|325198512|gb|ADY93968.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           G2136]
          Length = 462

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKDPEII--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|194440585|dbj|BAG65665.1| vasa [Gryllus bimaculatus]
          Length = 650

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           + G + L+ V  KR A+ +  YL E+N     +H +    ER E + D + G+  +LV  
Sbjct: 463 EGGDKTLVFVEMKRTADFIAAYLSEQNFPTTSIHGDRMQREREEALADFKSGQMTILVAT 522

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKS 696
            +   GLDI     V   D  K     S    +  IGR  R  N  K   + D    +
Sbjct: 523 AVAARGLDIKNVAHVVNYDLPK-----SIDEYVHRIGRTGRVGNRGKATSFYDPEADA 575


>gi|156554532|ref|XP_001605403.1| PREDICTED: similar to LOC556764 protein, partial [Nasonia
           vitripennis]
          Length = 595

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 70/187 (37%), Gaps = 21/187 (11%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           L+      + QII      +  ++       +  +  EI   A++  + ++ + TKR  +
Sbjct: 369 LQLSANHNILQIIDVCQEYEKEIK-------LSTLLKEIM--AEKENKTIVFIETKRRVD 419

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           ++T  +         +H +    ER  +++D R GK  +LV  ++   GLD+ +   V  
Sbjct: 420 EITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRSGKAPILVATDVAARGLDVEDVKFVIN 479

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
            D     +       +  IGR  R   +       T + +   A D        Q+    
Sbjct: 480 FD-----YPSCSEDYVHRIGRTGRRQKTGTAYTFFTPSNA-GKAND------LVQVLKEA 527

Query: 717 KHNINPQ 723
              INP+
Sbjct: 528 NQVINPK 534


>gi|157820683|ref|NP_001101516.1| probable ATP-dependent RNA helicase DDX41 [Rattus norvegicus]
 gi|149039854|gb|EDL93970.1| rCG24134 [Rattus norvegicus]
 gi|187469705|gb|AAI66825.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Rattus norvegicus]
          Length = 622

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 348 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 401

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 402 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 460

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 461 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 515

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 516 YVHRIGRTGRSGNTGIATTF------INKACDES 543


>gi|312082520|ref|XP_003143478.1| ATP-dependent RNA helicase DDX41 [Loa loa]
 gi|307761359|gb|EFO20593.1| ATP-dependent RNA helicase DDX41 [Loa loa]
          Length = 657

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 73/209 (34%), Gaps = 21/209 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            + + GF      +     F  +   R  T++ SAT         +  +V  +I   G  
Sbjct: 383 RMLDMGFE-----EEIRTIFSFFKGQR-QTLLFSATMPRKIQNFARSALVRAVIVNVGRA 436

Query: 555 ------VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
                 V   +E   A  ++  + D +   A    R+L+    K   +++ EYL  + + 
Sbjct: 437 GAASLNVVQEIEYVRADEKLTRILDCLQKTAP---RVLIFAEKKNDVDNIYEYLLVKGVD 493

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H      +R   +   R G+ DVLV  ++  +GLD      V   D          
Sbjct: 494 VASLHGGKDQKDRHTGVDAFRRGEKDVLVATDVASKGLDFENIQHVINFD-----MPEDI 548

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSI 697
            + +  IGR  R+    +          +
Sbjct: 549 ENYVHRIGRTGRSGRKGMATTFINRRADM 577


>gi|291222373|ref|XP_002731189.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 670

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 13/159 (8%)

Query: 569 EDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           + +   +    Q+   + L+ V TK+  +DLT  +         +H +    ER  ++ +
Sbjct: 353 DKLIRLLEEIMQENENKTLIFVETKKRTDDLTRRMRRDGWPAMCIHGDKSQPERDWVLSE 412

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            R G   +L+  ++   GLD+ +   V   D     +  S    I  IGR AR+  +   
Sbjct: 413 FRAGNAPILLATDVASRGLDVTDIKFVINFD-----YPSSTEDYIHRIGRTARSERTGTA 467

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
            Y      +++ A +     RE          INP+ + 
Sbjct: 468 -YTFFTAGNMKQAPELIDVLRE------ANQVINPKLIN 499


>gi|73620772|sp|Q91VN6|DDX41_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX41; AltName:
           Full=DEAD box protein 41
 gi|15030112|gb|AAH11308.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Mus musculus]
          Length = 622

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 348 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 401

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 402 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 460

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 461 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 515

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 516 YVHRIGRTGRSGNTGIATTF------INKACDES 543


>gi|328780921|ref|XP_394723.3| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
           mellifera]
          Length = 726

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 100/280 (35%), Gaps = 46/280 (16%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ + +          + + + +   +  R     + GF         P   +
Sbjct: 236 TPGRLIDFLEKGTT--------NLRRCTYLVLDEADRM---LDMGFE--------PQIRK 276

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV--------DPPVEI---RS 563
               +RP    ++ SAT         +  + + I    G +           VEI     
Sbjct: 277 IIEQIRPDRQVLMWSATWPKEVQALAEDFLSDYIQINIGSLTLAANHNIRQIVEICQEHE 336

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              ++ ++  EI     +G ++++ V TK+  +D+T+ +         +H +    ER  
Sbjct: 337 KEMKLSNLLREIG--KDRGSKMIIFVETKKKVDDITKAIKREGWPAISIHGDKSQPERDY 394

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++ + R GK  +LV  ++   GLD+ +   V   D     +  S    I  IGR  R  +
Sbjct: 395 VLSEFRNGKTMILVATDVAARGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGRCQS 449

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           +    YA     + + A +         +       INPQ
Sbjct: 450 AGTA-YAYFTPNNARQAKE------LISVLEEAGQAINPQ 482


>gi|291406391|ref|XP_002719530.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 3
           [Oryctolagus cuniculus]
          Length = 614

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 354

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 414

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 415 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 449


>gi|152965134|ref|YP_001360918.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
 gi|151359651|gb|ABS02654.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
          Length = 565

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 70/190 (36%), Gaps = 14/190 (7%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDP-----PVEIRSARTQVEDVYDEI 575
              T++ SAT PG         +     IR     D       +   + RT   D  + +
Sbjct: 211 ARQTMLFSATMPGPVVAMARSYMSRPTHIRAVDPTDDGATVAAITQFAYRTHALDKVEVL 270

Query: 576 NLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
               Q   R   ++   TKR A  + E L ER      +H ++    R + +R  R GK 
Sbjct: 271 ARMLQATGRGLTIVFSRTKRTAASVAEQLTERGFAAASIHGDLGQGAREQALRAFRHGKV 330

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
           DVLV  ++   G+D+ +   V             + + +  IGR  R  N+ V + + D 
Sbjct: 331 DVLVATDVAARGIDVEDVTHVINYQC-----PEDEKTYLHRIGRTGRAGNTGVAVTFVDW 385

Query: 693 ITKSIQLAID 702
                   ID
Sbjct: 386 DELPRWSLID 395


>gi|2500521|sp|Q40468|IF415_TOBAC RecName: Full=Eukaryotic initiation factor 4A-15; Short=eIF-4A-15;
           AltName: Full=ATP-dependent RNA helicase eIF4A-15
 gi|485945|emb|CAA55739.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 79/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 377 GVAINFVTKDDERMLSDIQR 396


>gi|2500516|sp|Q40470|IF4A7_TOBAC RecName: Full=Eukaryotic initiation factor 4A-7; Short=eIF-4A-7;
           AltName: Full=ATP-dependent RNA helicase eIF4A-7
 gi|485949|emb|CAA55738.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 80/200 (40%), Gaps = 18/200 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQC------QGIIVEQIIRPTGLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       + ++    +   G+    V +   
Sbjct: 204 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 377 GVAINFVIKDDERMLSDIQR 396


>gi|297700670|ref|XP_002827359.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like [Pongo
           abelii]
          Length = 600

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 404 MRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 463

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K I +  
Sbjct: 464 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITFFT 518

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 519 EDDKPLLRSV 528


>gi|239613405|gb|EEQ90392.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           dermatitidis ER-3]
          Length = 1197

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 88/252 (34%), Gaps = 28/252 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     VE I+    +V P +    E+R+  T+   +   + 
Sbjct: 747 QTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAPEITQVVEVRNEDTKFVRLLALLG 806

Query: 577 LA----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                   +  R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 807 DLYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKAGV 866

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F +L+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 867 FPILIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 919

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K      P+ V++ +   I+ +       +      
Sbjct: 920 --------LTEDQERYSVDISKALKQSGQPVPEPVQKLVNSFIEKVKAGKEKASGSGFGG 971

Query: 751 QQLSLSKKKGKA 762
           + L    ++  A
Sbjct: 972 KGLERLDQERDA 983


>gi|261194749|ref|XP_002623779.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           dermatitidis SLH14081]
 gi|239588317|gb|EEQ70960.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           dermatitidis SLH14081]
          Length = 1197

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 88/252 (34%), Gaps = 28/252 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     VE I+    +V P +    E+R+  T+   +   + 
Sbjct: 747 QTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAPEITQVVEVRNEDTKFVRLLALLG 806

Query: 577 LA----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                   +  R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 807 DLYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKAGV 866

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F +L+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 867 FPILIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 919

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K      P+ V++ +   I+ +       +      
Sbjct: 920 --------LTEDQERYSVDISKALKQSGQPVPEPVQKLVNSFIEKVKAGKEKASGSGFGG 971

Query: 751 QQLSLSKKKGKA 762
           + L    ++  A
Sbjct: 972 KGLERLDQERDA 983


>gi|261340877|ref|ZP_05968735.1| ATP-dependent RNA helicase SrmB [Enterobacter cancerogenus ATCC
           35316]
 gi|288317308|gb|EFC56246.1| ATP-dependent RNA helicase SrmB [Enterobacter cancerogenus ATCC
           35316]
          Length = 442

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 12/181 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT     ++     ++E  +    T       +I     + +++  +I L  
Sbjct: 181 RNQTMLFSATLEGDAIKDFAERLLEDPVEVSATPSTRERKKIHQWYYRADNLEHKIELLK 240

Query: 580 -----QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                +   R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +
Sbjct: 241 QLLKQEDATRTIVFVRKRERVHELAEILRNAGINNCYLEGEMAQVKRTEGIKRLTDGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DIP+   V   D  + G      + +  IGR  R     + +      
Sbjct: 301 VLVATDVAARGIDIPDVSHVINFDMPRSG-----DTYLHRIGRTGRAGRKGIAISLVEAH 355

Query: 695 K 695
            
Sbjct: 356 D 356


>gi|156547765|ref|XP_001605842.1| PREDICTED: similar to CG9748-PA [Nasonia vitripennis]
          Length = 708

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           VE    R+ + D+    N          L+ V TK+ A+ L E+L+ ++  V  +H +  
Sbjct: 463 VEEHEKRSYLLDLLGACNFQEPTQESLTLVFVETKKGADMLEEFLHNQHYPVTSIHGDRS 522

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + +R  R G   +LV   +   GLDIP    V   D             +  IGR
Sbjct: 523 QHEREDALRRFRSGHTPILVATAVAARGLDIPHVKHVINFD-----LPGDVEEYVHRIGR 577

Query: 678 AARNVNSK 685
             R  N  
Sbjct: 578 TGRMGNLG 585


>gi|149914601|ref|ZP_01903131.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. AzwK-3b]
 gi|149811394|gb|EDM71229.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. AzwK-3b]
          Length = 511

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 83/271 (30%), Gaps = 40/271 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++     LL       T  QI  +   D      + + GF  P       L   
Sbjct: 130 TPGRLLDHFERGKLLL------TGVQIMVVDEADR-----MLDMGFI-PDIERIFSLTP- 176

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP----TGLVDPPVEI----------- 561
                   T   SAT    E+E+     ++  +R            +E            
Sbjct: 177 ----FTRQTFFFSATMAP-EIERITNTFLQNPVRIEVARQATASETIEQGVVMFKPSRRE 231

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R+   + + +   I+   +     ++    K   + +++ L +       +H ++   +R
Sbjct: 232 RADSEKRDILRAIIDAEGEACTNAIVFCNRKVDVDIVSKSLKKHGYDAAPIHGDLDQSQR 291

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
              +   R G   +LV  ++   GLD+P    V   D             +  IGR  R 
Sbjct: 292 TRTLDGFRAGDLKILVASDVAARGLDVPSVSHVFNYDVPG-----HAEDYVHRIGRTGRA 346

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQL 712
             S   +            +D   R  +KQ+
Sbjct: 347 GRSGKAMMISGPRDD--KNLDAIERLIQKQI 375


>gi|147785805|emb|CAN62124.1| hypothetical protein VITISV_037577 [Vitis vinifera]
          Length = 398

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 24/186 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             +++SAT  +  LE     + + +        +   G+    V +     + +   D+Y
Sbjct: 197 QVVLISATLPNEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 256

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TKR  + LTE +   N  V  MH ++   ER  I+ + R G 
Sbjct: 257 DTLTIT-----QAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRSGT 311

Query: 633 FDVLVGINLLREGLDIP---ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
             VL+  ++   GLD+       LV   D        ++   I  IGR+ R     V + 
Sbjct: 312 TRVLITTDVWARGLDVQQASHVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAIN 366

Query: 690 ADTITK 695
                 
Sbjct: 367 FVKTDD 372


>gi|154340487|ref|XP_001566200.1| DEAD box RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063519|emb|CAM39700.1| putative DEAD box RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 389

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 67/180 (37%), Gaps = 15/180 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE--------QIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             I+VSAT  +  LE  +  + E          I    +    V +   + + + + +  
Sbjct: 191 QIILVSATLPADVLEMTEKFMTEPASILVKRDEITVDSVRQYFVSVDEEKNKFDVLMELY 250

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +         ++   T++  E L + +      V  MH ++   ER EI+R  R G   V
Sbjct: 251 DSLTIAH--AVVFCNTRKKVEQLAKKMTREKFTVVAMHGDMPQAERDEIMRQFRDGHSRV 308

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  +L   G+D+    LV   D        ++   I  IGR  R   + + +      +
Sbjct: 309 LITTDLWARGIDVERVSLVLNYD-----LPLAREQYIHRIGRTGRMGRTGLAITFVRHDE 363


>gi|78060377|ref|YP_366952.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
 gi|77964927|gb|ABB06308.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
          Length = 481

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 12/147 (8%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
              L+ V T+   + L   L E    V  +H +     R+  +   + G+  +LV  ++ 
Sbjct: 245 EHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVA 304

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-- 700
             GLDI +  LV  +D             +  IGR  R   S V +      ++ QLA  
Sbjct: 305 ARGLDIDDLPLVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAI 359

Query: 701 ---IDETTRRREKQLEHNKKHNINPQS 724
              I +T  RRE++     +H   P++
Sbjct: 360 EALIKQTL-RREEEPGFEAEHR-VPET 384


>gi|47206275|emb|CAF95815.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 586

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 64/186 (34%), Gaps = 15/186 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYD 573
              T++ SAT    E++      +E  I          +  +   V       +   + D
Sbjct: 306 IRQTMMFSAT-FPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLD 364

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R G+ 
Sbjct: 365 LLNATGKDSL-TLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRC 423

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV   +   GLDI     V   D             +  IGR  R        + +  
Sbjct: 424 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGFCLATSFFNDK 478

Query: 694 TKSIQL 699
             +I  
Sbjct: 479 NSNITK 484


>gi|221307593|ref|NP_001138306.1| probable ATP-dependent RNA helicase DDX5 [Pan troglodytes]
 gi|156630859|sp|A5A6J2|DDX5_PANTR RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|146741418|dbj|BAF62365.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Pan troglodytes verus]
          Length = 614

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 354

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 414

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 415 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 449


>gi|86357880|ref|YP_469772.1| ATP dependent RNA helicase protein [Rhizobium etli CFN 42]
 gi|86281982|gb|ABC91045.1| ATP dependent RNA helicase protein [Rhizobium etli CFN 42]
          Length = 527

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 65/194 (33%), Gaps = 20/194 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVED-----VYDE 574
            T+  SAT      +     +      ++ RP       V  R   +  +D     V  E
Sbjct: 202 QTLFFSATMPPEIQKLADRFLQNPERIEVARPASAAKT-VTQRFVASHSKDYEKRAVLRE 260

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +  A  +    ++    K+   DL   L      V  +H ++    R  ++++ R G   
Sbjct: 261 LVRAQTELKNAIIFCNRKKDVADLFRSLERHGFNVGALHGDMDQRSRTMMLQNFRDGNLQ 320

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT-- 692
           +LV  ++   GLDIP+   V   D             +  IGR  R   S       T  
Sbjct: 321 LLVASDVAARGLDIPDVSHVFNFDVPI-----HSEDYVHRIGRTGRAGRSGAAFTLVTKR 375

Query: 693 ---ITKSIQLAIDE 703
                 +I+  I E
Sbjct: 376 DTKFVDAIEKLIGE 389


>gi|30584123|gb|AAP36310.1| Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA
           helicase, 68kDa) [synthetic construct]
 gi|60653929|gb|AAX29657.1| DEAD box polypeptide 5 [synthetic construct]
          Length = 615

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 354

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 414

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 415 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 449


>gi|5059030|gb|AAD38876.1|AF110008_1 p68 RNA helicase [Molgula occulta]
          Length = 619

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 5/119 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +   + ++   TKR  ++LT  +         +H +    ER  ++ + R G+  +LV  
Sbjct: 394 ESENKTIIFTETKRRCDELTRTMRRDGWPAMCIHGDKSQPERDWVLNEFRSGRSPILVAT 453

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           ++   GLD+ +   V   D     F       +  IGR AR           T   + Q
Sbjct: 454 DVASRGLDVHDVKFVINYD-----FPSQCEDYVHRIGRTARAEQKGTAYTFFTYDNAKQ 507


>gi|83816893|ref|NP_031866.2| probable ATP-dependent RNA helicase DDX5 [Mus musculus]
 gi|26354006|dbj|BAC40633.1| unnamed protein product [Mus musculus]
 gi|74141529|dbj|BAE38540.1| unnamed protein product [Mus musculus]
 gi|74177712|dbj|BAE38954.1| unnamed protein product [Mus musculus]
 gi|82568932|gb|AAI08370.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|120537322|gb|AAI29875.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|123243266|emb|CAM18566.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|127799027|gb|AAH62916.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|148702364|gb|EDL34311.1| mCG2872, isoform CRA_a [Mus musculus]
 gi|148702366|gb|EDL34313.1| mCG2872, isoform CRA_a [Mus musculus]
 gi|148702367|gb|EDL34314.1| mCG2872, isoform CRA_a [Mus musculus]
          Length = 615

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 354

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 414

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 415 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 449


>gi|327291685|ref|XP_003230551.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like [Anolis
           carolinensis]
          Length = 487

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 8/136 (5%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I    +H++    +R  ++   R GK
Sbjct: 309 MRDFVKKGFAPPVLVFVQSIERAKELFRELIYEGINADVIHADRTQQQRDSVVHGFRAGK 368

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYAD 691
             VL+   LL  G+D     +V   D     F  S    I  IGR  R  +  K I +  
Sbjct: 369 IWVLICTALLARGMDFKGVNVVINYD-----FPSSAVEYIHRIGRTGRAGHAGKAITFFT 423

Query: 692 TITKSIQLAIDETTRR 707
              K +  +I    +R
Sbjct: 424 EDDKPLLRSIASVIQR 439


>gi|323358213|ref|YP_004224609.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323274584|dbj|BAJ74729.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 585

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 75/193 (38%), Gaps = 15/193 (7%)

Query: 523 PTTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
               + SAT         +  L   + I V+     +  +     I S + +++ +   +
Sbjct: 194 KQVALFSATMPAQIRRISAQYLNDPEEITVKTKTTTSANITQRYLIVSYQQKIDALTRIL 253

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +   +G  +++   TK   E + E L  R      ++ ++  ++R   +  L+ GK D+
Sbjct: 254 EVENFEG--MIVFTRTKNETETVAEKLRARGYTAAAINGDIAQVQRERTVNQLKSGKLDI 311

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLD+     V   D           S +  IGR  R   +   I +     
Sbjct: 312 LVATDVAARGLDVERISHVVNYD-----LPIDTESYVHRIGRTGRAGRTGDAISFVTPRE 366

Query: 695 KSIQLAIDETTRR 707
           + +  AI++ TR+
Sbjct: 367 RRMLTAIEKATRQ 379


>gi|313201469|ref|YP_004040127.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
           MP688]
 gi|312440785|gb|ADQ84891.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
          Length = 468

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 86/263 (32%), Gaps = 32/263 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         ++   + + ++  +   +  R     + GF       N  L  E
Sbjct: 132 TPGRLLD--------HMERGRIDMSRLQMLILDEADRM---LDMGFMPDIERINEALPRE 180

Query: 517 EWNCLRPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIR----SARTQVE 569
                   T++ SAT   P +   +          I         +E R           
Sbjct: 181 R------QTLMFSATFEGPIANIAKTLLKDPKVIQIAAQKEKHANIEQRLHFVDDMNHKN 234

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + + + +A       ++   TKR A+ L E LY    +   +H ++    R   +  LR
Sbjct: 235 KLLEHLLIAPDVNQ-AIVFTSTKRHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLR 293

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  ++   G+D+     V   D  K          +  IGR  R  N+ V + 
Sbjct: 294 HGDVRVLVATDVAARGIDVQGITHVINYDLPKF-----AEDYVHRIGRTGRAGNTGVAVS 348

Query: 690 ADTITKSIQLAIDE--TTRRREK 710
             +     QL   E  T +R E 
Sbjct: 349 FASHADRHQLRKIEQYTGQRIEI 371


>gi|304387310|ref|ZP_07369503.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091]
 gi|304338693|gb|EFM04810.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091]
          Length = 462

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKDPEII--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|257867061|ref|ZP_05646714.1| helicase [Enterococcus casseliflavus EC30]
 gi|257873396|ref|ZP_05653049.1| helicase [Enterococcus casseliflavus EC10]
 gi|257877139|ref|ZP_05656792.1| helicase [Enterococcus casseliflavus EC20]
 gi|257801117|gb|EEV30047.1| helicase [Enterococcus casseliflavus EC30]
 gi|257807560|gb|EEV36382.1| helicase [Enterococcus casseliflavus EC10]
 gi|257811305|gb|EEV40125.1| helicase [Enterococcus casseliflavus EC20]
          Length = 507

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 75/194 (38%), Gaps = 13/194 (6%)

Query: 522 RPTTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEI 575
              T++ SAT  P    +        E + I+   +    ++   +RS   +  D+   +
Sbjct: 174 VRQTLLFSATMPPAIKNIGVKFMKEPEHVQIKAKEMTADLIDQYYVRSKDYEKFDIMTRL 233

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               Q     ++   TKR  ++L   L  R  +   +H ++   +R+ ++R  + G+ D+
Sbjct: 234 LD-VQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDI 292

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R       + +     
Sbjct: 293 LVATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNE 347

Query: 695 KSIQLAIDETTRRR 708
            S    I+  T++R
Sbjct: 348 MSYLHVIENLTKKR 361


>gi|195565659|ref|XP_002106416.1| GD16140 [Drosophila simulans]
 gi|194203792|gb|EDX17368.1| GD16140 [Drosophila simulans]
          Length = 800

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 9/162 (5%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           +       + QI+         +E       + +    I  +   G +I++ V TK   E
Sbjct: 451 MNLSANHNIRQIVEIC----TEIEKPQRLVCLLNEISPIKNSGSNGNKIIVFVETKIKVE 506

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           D+ + +         +H +    ER  +++D R GK ++L+  ++   GLD+ +   V  
Sbjct: 507 DILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVIN 566

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            D     +  S  + +  IGR  R           T   + Q
Sbjct: 567 YD-----YPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQ 603


>gi|196004420|ref|XP_002112077.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
 gi|190585976|gb|EDV26044.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
          Length = 633

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 77/201 (38%), Gaps = 17/201 (8%)

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELE------QCQGIIVEQI----IRPTGLVDPPVEIR 562
           L         P T++ SAT   W L+      +    IV+ I    +R +  V+  V   
Sbjct: 223 LSHAYVKDRHPQTLLFSATMPKWALKTIDKYMKSDKKIVDLIGKDALRTSTTVEHKVISC 282

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
               +   + D + +      R ++   TK+ A +L          V+ +H +++  +R 
Sbjct: 283 PYHERAATIGDLVKVYGGDHARTIIFSPTKKEANELALS-SVLKQEVQVLHGDIQQAQRE 341

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             ++  R G F  LV  ++   GLDIPE  LV   +  K+       + I   GR  R  
Sbjct: 342 VTLKGFREGNFPCLVATDVAARGLDIPEVDLVIQCEPPKD-----ADTYIHRSGRTGRAN 396

Query: 683 NSK-VILYADTITKSIQLAID 702
            +   I +     +    +I+
Sbjct: 397 RTGICITFYKPTHQDRIKSIE 417


>gi|145534991|ref|XP_001453234.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420945|emb|CAK85837.1| unnamed protein product [Paramecium tetraurelia]
          Length = 567

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 16/150 (10%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TK+  + L + L    IR   +H + K  ER  ++   R G+   L+  ++  
Sbjct: 357 KILIFCSTKKGCDQLQKTLDREGIRCLALHGDKKQSERDYVMSHFRNGRSTALIATDVAS 416

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLDI +  +V   D  K          +  IGR  R   +   +      +  ++A D 
Sbjct: 417 RGLDIKDIEIVVNYDMPKV-----IEDYVHRIGRTGRAGANGQSISFFASDEDARMAKDL 471

Query: 704 TTRRREKQL-----------EHNKKHNINP 722
               RE Q            ++NK +N NP
Sbjct: 472 VEILRESQNDIPYELRSLVDQNNKGNNYNP 501


>gi|30584005|gb|AAP36251.1| Homo sapiens DEAD-box protein abstrakt [synthetic construct]
 gi|61369941|gb|AAX43416.1| DEAD box polypeptide 41 [synthetic construct]
 gi|61369946|gb|AAX43417.1| DEAD box polypeptide 41 [synthetic construct]
          Length = 623

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 348 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 401

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 402 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 460

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 461 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 515

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 516 YVHRIGRTGRSGNTGIATTF------INKACDES 543


>gi|83282365|ref|XP_729738.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23488393|gb|EAA21303.1| Helicase conserved C-terminal domain, putative [Plasmodium yoelii
           yoelii]
          Length = 212

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   +    ++  RI++ V TKR A+ +T+ L    +    +H + K  ER  ++ D +
Sbjct: 20  NLKSLLQRIFKENDRIIVFVETKRSADFITKALRLEGMPALCIHGDKKQDERRWVLNDFK 79

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GK  +L+  ++   GLDI     V   D     F       +  IGR  R         
Sbjct: 80  TGKSPILIATDVASRGLDIKNVKFVINYD-----FPNQIEDYVHRIGRTGRAGAHGASFT 134

Query: 690 ADTITK 695
             T  K
Sbjct: 135 FLTSDK 140


>gi|253999447|ref|YP_003051510.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|253986126|gb|ACT50983.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4]
          Length = 468

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 86/263 (32%), Gaps = 32/263 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         ++   + + ++  +   +  R     + GF       N  L  E
Sbjct: 132 TPGRLLD--------HMERGRIDMSRLQMLILDEADRM---LDMGFMPDIERINEALPRE 180

Query: 517 EWNCLRPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIR----SARTQVE 569
                   T++ SAT   P +   +          I         +E R           
Sbjct: 181 R------QTLMFSATFEGPIANIAKTLLKDPKVIQIAAQKEKHANIEQRLHFVDDMNHKN 234

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + + + +A       ++   TKR A+ L E LY    +   +H ++    R   +  LR
Sbjct: 235 KLLEHLLIAPDVNQ-AIVFTSTKRHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLR 293

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  ++   G+D+     V   D  K          +  IGR  R  N+ V + 
Sbjct: 294 HGDVRVLVATDVAARGIDVQGITHVINYDLPKF-----AEDYVHRIGRTGRAGNTGVAVS 348

Query: 690 ADTITKSIQLAIDE--TTRRREK 710
             +     QL   E  T +R E 
Sbjct: 349 FASHADRHQLRKIEQYTGQRIEI 371


>gi|121635074|ref|YP_975319.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
 gi|120866780|emb|CAM10533.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
 gi|325132439|gb|EGC55132.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M6190]
 gi|325134396|gb|EGC57041.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M13399]
 gi|325138213|gb|EGC60782.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           ES14902]
 gi|325144497|gb|EGC66796.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240013]
 gi|325205865|gb|ADZ01318.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M04-240196]
          Length = 462

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKDPEII--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|4758138|ref|NP_004387.1| probable ATP-dependent RNA helicase DDX5 [Homo sapiens]
 gi|300793700|ref|NP_001178324.1| probable ATP-dependent RNA helicase DDX5 [Bos taurus]
 gi|73965213|ref|XP_850467.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 2 [Canis
           familiaris]
 gi|109116805|ref|XP_001109860.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Macaca
           mulatta]
 gi|297487273|ref|XP_002696148.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2 [Bos
           taurus]
 gi|301778273|ref|XP_002924553.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Ailuropoda melanoleuca]
 gi|332227004|ref|XP_003262677.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Nomascus
           leucogenys]
 gi|129383|sp|P17844|DDX5_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5; AltName: Full=RNA helicase p68
 gi|35220|emb|CAA36324.1| unnamed protein product [Homo sapiens]
 gi|38318|emb|CAA33751.1| unnamed protein product [Homo sapiens]
 gi|2599360|gb|AAB84094.1| RNA helicase p68 [Homo sapiens]
 gi|16359122|gb|AAH16027.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens]
 gi|30582725|gb|AAP35589.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase,
           68kDa) [Homo sapiens]
 gi|61362303|gb|AAX42197.1| DEAD box polypeptide 5 [synthetic construct]
 gi|61362310|gb|AAX42198.1| DEAD box polypeptide 5 [synthetic construct]
 gi|119614608|gb|EAW94202.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, isoform CRA_a [Homo
           sapiens]
 gi|119614609|gb|EAW94203.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, isoform CRA_a [Homo
           sapiens]
 gi|123979568|gb|ABM81613.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [synthetic construct]
 gi|123994197|gb|ABM84700.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [synthetic construct]
 gi|168277560|dbj|BAG10758.1| ATP-dependent RNA helicase DDX5 [synthetic construct]
 gi|197692215|dbj|BAG70071.1| ATP-dependent RNA helicase DDX5 [Homo sapiens]
 gi|296476161|gb|DAA18276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2 [Bos taurus]
          Length = 614

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 354

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 414

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 415 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 449


>gi|328868347|gb|EGG16725.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 615

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 73/198 (36%), Gaps = 18/198 (9%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-------VYDEI 575
             T++ SAT            +   +    G  +    +   +  +++       +++++
Sbjct: 289 HQTMMFSATWPKEVQGLSSKFLRNPLKLTVGTGELQANVNVTQHVIDNGAFSPNEMFEDL 348

Query: 576 NLAAQQGLR-----ILLTVLTKRMAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLR 629
               Q  L+     +++   TKR  + ++ +L  +  I    +HS  +  +R   +R  R
Sbjct: 349 GKRVQDMLKSREDLLIIFCNTKRKCDQVSNFLDMKLQITCGVLHSGREQPQRERSLRQFR 408

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
             + +VLV  ++   GLDIP+   V  LD     F       +  IGR  R         
Sbjct: 409 HHEINVLVATDVAARGLDIPKVKAVINLD-----FPLGIEDYVHRIGRTGRAGAKGDAYT 463

Query: 690 ADTITKSIQLAIDETTRR 707
             + T     A+ +   R
Sbjct: 464 YISQTDDNLGALVQIMLR 481


>gi|309792104|ref|ZP_07686577.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
 gi|308225848|gb|EFO79603.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
          Length = 422

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 72/209 (34%), Gaps = 21/209 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQ-------IIRPTGLVDPPVEIRSARTQVEDVYDE 574
           R  T++ SAT    EL+Q               ++RP   +   +       +   + D 
Sbjct: 175 RRQTMLFSAT-LPAELQQLAATTAPHAKLVQIGLVRPAHTITHAIYPVPPHRKTALLLDL 233

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++        +L+   TK  A  L + +         +HS     +R   +   R G+F 
Sbjct: 234 LH--KANSGSVLVFTRTKHRANRLLQQIAREGHSAAVLHSNKSQNQRQLALDGFRDGRFR 291

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   GLD+     V   D        +  + I  IGR  R   S       T  
Sbjct: 292 ILVATDIAARGLDVERISHVINYD-----IPDTPDAYIHRIGRTGRATRSGDAFTLVTPE 346

Query: 695 KSIQ-----LAIDETTRRRE-KQLEHNKK 717
            + Q      AI     RR+    ++N +
Sbjct: 347 DASQVRQIERAIGAPLERRQLAGFDYNAQ 375


>gi|304314413|ref|YP_003849560.1| ATP-dependent RNA helicase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587872|gb|ADL58247.1| predicted ATP-dependent RNA helicase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 425

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 8/167 (4%)

Query: 522 RPTTIVVSATPGSWELEQCQGII-VEQIIRPTGLVDPPVEIRSARTQVEDVYDEI-NLAA 579
           R  T++ SAT     L   +  +   QI+R      P ++    +T+ ED  + +  +  
Sbjct: 176 RRQTMLFSATISKPVLRIAERYMRSPQILRVEKKHSPRIDEFYFKTREEDKVELLDWILT 235

Query: 580 QQGLRI-LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
              +R+ L+   TKR  + L + L      V  +H ++   +R  ++   R G+F++L+ 
Sbjct: 236 SNDIRMGLIFCNTKRRVQRLRKQLSRMGYSVDEIHGDLSQSKRERVMERFRKGRFNLLIA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            ++   G+ +P+  +V   D   E         +  IGR  R  +S 
Sbjct: 296 TDVAARGIHVPDVEVVVNYDLPFEN-----EYYVHRIGRTGRAGSSG 337


>gi|158321361|ref|YP_001513868.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           oremlandii OhILAs]
 gi|158141560|gb|ABW19872.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
           OhILAs]
          Length = 461

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 93/262 (35%), Gaps = 31/262 (11%)

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLV-DPPVEIRSARTQV--EDVYDEINLAAQQG 582
            ++  TP + +L      I + I   T      PVEIR    +V  +++   +     + 
Sbjct: 168 YIIKKTPQNRQLMLYSATIPKGIRALTNRYMKNPVEIRIHSNKVTLDEIKQLVVETTDRH 227

Query: 583 LR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            +               ++   TKR  + L++ L E+      +H ++   +R +++++ 
Sbjct: 228 KQEALMHMIKQENPFLAIVFCRTKRRVKTLSDALIEKGFSCDELHGDMTQAKREKVMKEF 287

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           R  K  +LV  ++   G+D+     V   D       +     I  IGR  R  +    I
Sbjct: 288 RNAKLQILVATDVAARGIDVEGITHVFNYD-----IPQDVEGYIHRIGRTGRAGDKGMAI 342

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
            +A    +     I+    ++  ++         P+   E I E  +    +     N  
Sbjct: 343 TFAAPKDRDSLAMIERGINQKIVKITFK------PEGRVESIEETFEREAKKREERKN-- 394

Query: 748 IDAQQLSLSKKKGKAHLKSLRK 769
            D +     +K G  +    RK
Sbjct: 395 KDNKFKDNQRKNGDKNSAKGRK 416


>gi|19698881|gb|AAL91176.1| eukaryotic translation initiation factor [Arabidopsis thaliana]
          Length = 412

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 203 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTVEGIKQFYVNVEKE 262

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 263 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 320

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 321 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 375

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 376 GVAINFVTRDDERMLFDI 393


>gi|56090441|ref|NP_001007614.1| probable ATP-dependent RNA helicase DDX5 [Rattus norvegicus]
 gi|50927691|gb|AAH79036.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Rattus norvegicus]
 gi|149054596|gb|EDM06413.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
 gi|149054597|gb|EDM06414.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
 gi|149054598|gb|EDM06415.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
          Length = 615

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 354

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 414

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 415 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 449


>gi|66555009|ref|XP_395774.2| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Apis
           mellifera]
          Length = 566

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 14/159 (8%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++  +  EI   A+   + ++ + TKR  +++T  +         +H +    ER  +
Sbjct: 339 ENKLSTLLKEIM--AESENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWV 396

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           ++D R GK  +LV  ++   GLD+ +   V   D     +       +  IGR  R   +
Sbjct: 397 LQDFRSGKAPILVATDVAARGLDVEDVKFVINFD-----YPSCSEDYVHRIGRTGRRQKT 451

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
                  T   S   A D        Q+       INP+
Sbjct: 452 GTAYTFFTPNNS-NKAND------LIQVLKEANQVINPK 483


>gi|270047502|ref|NP_598820.2| probable ATP-dependent RNA helicase DDX41 [Mus musculus]
 gi|74142777|dbj|BAE33914.1| unnamed protein product [Mus musculus]
          Length = 622

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 348 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 401

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 402 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 460

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 461 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 515

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 516 YVHRIGRTGRSGNTGIATTF------INKACDES 543


>gi|27697141|gb|AAH41785.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Homo sapiens]
 gi|119578004|gb|EAW57600.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52, isoform CRA_b [Homo
           sapiens]
          Length = 599

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 403 VRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 462

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K I +  
Sbjct: 463 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITFFT 517

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 518 EDDKPLLRSV 527


>gi|2500517|sp|Q40471|IF4A9_TOBAC RecName: Full=Eukaryotic initiation factor 4A-9; Short=eIF-4A-9;
           AltName: Full=ATP-dependent RNA helicase eIF4A-9
 gi|485951|emb|CAA55736.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 80/200 (40%), Gaps = 18/200 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +  +  + +   I  
Sbjct: 377 GVSINFVTSDDERMLSDIQR 396


>gi|19113945|ref|NP_593033.1| ATP-dependent RNA helicase Rok1 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|1175447|sp|Q09775|ROK1_SCHPO RecName: Full=ATP-dependent RNA helicase rok1
 gi|1008436|emb|CAA91073.1| ATP-dependent RNA helicase Rok1 (predicted) [Schizosaccharomyces
           pombe]
          Length = 481

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 6/137 (4%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++    +   R+++ V     A+ L   L    I V  +H E+   +R E +   R 
Sbjct: 277 ILRQMISNGELKPRVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRK 336

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G+  VL+  +LL  G+D     +V   D     F +S  S I  IGR  R  N+   + +
Sbjct: 337 GEIWVLIATDLLARGIDFHGVKMVINFD-----FPQSVHSYIHRIGRTGRAGNTGQAVTF 391

Query: 690 ADTITKSIQLAIDETTR 706
                      I    R
Sbjct: 392 FTKEDGEYIKLIAGVMR 408


>gi|18400210|ref|NP_566469.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|1170503|sp|P41376|IF4A1_ARATH RecName: Full=Eukaryotic initiation factor 4A-1; Short=eIF-4A-1;
           AltName: Full=ATP-dependent RNA helicase eIF4A-1;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 4
 gi|16554|emb|CAA46188.1| eukaryotic translation initiation factor 4A-1 [Arabidopsis
           thaliana]
 gi|11994363|dbj|BAB02322.1| eukaryotic translation initiation factor; RNA helicase [Arabidopsis
           thaliana]
 gi|14594805|emb|CAC43288.1| translation initiation factor eIF-4A1 [Arabidopsis thaliana]
 gi|15293047|gb|AAK93634.1| putative Eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|15450486|gb|AAK96536.1| AT3g13920/MDC16_4 [Arabidopsis thaliana]
 gi|20259055|gb|AAM14243.1| putative eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|20466101|gb|AAM19972.1| AT3g13920/MDC16_4 [Arabidopsis thaliana]
 gi|22655066|gb|AAM98124.1| unknown protein [Arabidopsis thaliana]
 gi|23397033|gb|AAN31802.1| putative eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|332641917|gb|AEE75438.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 412

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 203 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKE 262

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 263 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 320

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 321 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 375

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 376 GVAINFVTRDDERMLFDI 393


>gi|319944378|ref|ZP_08018652.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
 gi|319742339|gb|EFV94752.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
          Length = 546

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 96/265 (36%), Gaps = 32/265 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         V +  V + Q+  +   +  R     + GF LP       L   
Sbjct: 151 TPGRLLD--------HVQQKSVNLSQVQLLVLDEADRM---LDMGF-LPDIQRIINLL-- 196

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVY 572
                R   ++ SAT      +  +  + E    ++ RP  L +  VE        ED+ 
Sbjct: 197 ---NPRRQNLMFSATFSDEIRKLAKRFLNEPKLIEVARPNTLAEN-VEQTVYHVPSEDLK 252

Query: 573 DEINLA--AQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   A   ++G  ++++   TK  A  L  +L +       +H +    ER++ +   +
Sbjct: 253 RDAVGALIRERGIEQVIVFSNTKIGAGRLARHLQKEGFLAEAIHGDKSQQERLKTLDGFK 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VI 687
            G+  VLV  ++   GLDI E   V   D        S    +  IGR  R   S   + 
Sbjct: 313 AGEIKVLVATDVAARGLDIAELPAVINYD-----LPHSPEDYVHRIGRTGRAGASGMALS 367

Query: 688 LYADTITKSIQLAIDETTRRREKQL 712
           L  D   K++      T R+ + Q 
Sbjct: 368 LMVDHDQKALAEIEKLTKRKLDVQE 392


>gi|309378859|emb|CBX22564.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 462

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKDPEVI--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|242060494|ref|XP_002451536.1| hypothetical protein SORBIDRAFT_04g003390 [Sorghum bicolor]
 gi|241931367|gb|EES04512.1| hypothetical protein SORBIDRAFT_04g003390 [Sorghum bicolor]
          Length = 410

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 79/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 201 YDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE 260

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 261 DWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 318

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 319 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 373

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 374 GVAINFVTRDDERMLFDIQR 393


>gi|194216755|ref|XP_001495197.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX5
           (DEAD box protein 5) (RNA helicase p68) [Equus caballus]
          Length = 614

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 354

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 414

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 415 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 449


>gi|21071032|ref|NP_057306.2| probable ATP-dependent RNA helicase DDX41 [Homo sapiens]
 gi|55625482|ref|XP_518135.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform 3 [Pan
           troglodytes]
 gi|20532370|sp|Q9UJV9|DDX41_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX41; AltName:
           Full=DEAD box protein 41; AltName: Full=DEAD box protein
           abstrakt homolog
 gi|15930065|gb|AAH15476.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Homo sapiens]
 gi|119605387|gb|EAW84981.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_d [Homo
           sapiens]
 gi|189067937|dbj|BAG37875.1| unnamed protein product [Homo sapiens]
 gi|306921323|dbj|BAJ17741.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [synthetic construct]
 gi|325463517|gb|ADZ15529.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [synthetic construct]
          Length = 622

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 348 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 401

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 402 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 460

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 461 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 515

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 516 YVHRIGRTGRSGNTGIATTF------INKACDES 543


>gi|2500520|sp|Q40467|IF414_TOBAC RecName: Full=Eukaryotic initiation factor 4A-14; Short=eIF-4A-14;
           AltName: Full=ATP-dependent RNA helicase eIF4A-14
 gi|485943|emb|CAA55742.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 80/198 (40%), Gaps = 18/198 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQC------QGIIVEQIIRPTGLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       + ++    +   G+    V +   
Sbjct: 204 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDDVTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 377 GVAINFVTKDDERMLFDI 394


>gi|123500450|ref|XP_001327863.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121910798|gb|EAY15640.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 478

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 7/144 (4%)

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           G+    V+++    + + + D     + Q  + ++   +K   + ++E L +    V  +
Sbjct: 307 GIKQFYVDVQETSNKFDCLLDIYGSVSIQ--KAIIFANSKNAVDYISEQLQQHGFGVAPI 364

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H+ +  LER  I+RD R G   VL+  +LL  G+D+ +  LV   +  K+         I
Sbjct: 365 HAGLDQLERDRIMRDFRTGTARVLISTDLLARGIDVQQVTLVINFELPKK-----LEQYI 419

Query: 673 QTIGRAARNVNSKVILYADTITKS 696
             IGR+ R     V +        
Sbjct: 420 HRIGRSGRYGRKGVAINICDHEDM 443


>gi|56461091|ref|YP_156372.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
 gi|56180101|gb|AAV82823.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 594

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 82/200 (41%), Gaps = 18/200 (9%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R L+ V T++   D+ E L     +   +  ++   +R + +  LR G  ++LVG +++
Sbjct: 248 QRALIFVRTRQDTMDVAELLQRNGFKAAPLSGDLNQAQREQTVSQLRSGHIEILVGTDVV 307

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV---------NSKVILYADTI 693
             GLD+PE   V   D   +    S    I   GRA R              ++ + + +
Sbjct: 308 ARGLDVPEITHVINYDLPSD--TESYVHRIGRTGRAGRTGEAILFFRAKERHLLRHYERL 365

Query: 694 TKSIQLAID-----ETTRRREKQLEHNKKHNINPQSVK--EKIMEVIDPILLEDAATTNI 746
           T +     +     E ++ R++QL    + ++ P++    +  +E +    LE +  +  
Sbjct: 366 TNAPVEFFEVPNANELSKYRQQQLLEKLQASLAPETASADKPKLEKLLGEWLEQSELSAE 425

Query: 747 SIDAQQLSLSKKKGKAHLKS 766
            I    L+   ++    LK 
Sbjct: 426 EIALALLAQHNEQRPLFLKE 445


>gi|332860595|ref|XP_001146428.2| PREDICTED: ATP-dependent RNA helicase DDX3X-like, partial [Pan
           troglodytes]
          Length = 448

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 48/134 (35%), Gaps = 5/134 (3%)

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
           TG       +    +Q+        L A +    L+ V TK+ A+ L ++LY        
Sbjct: 270 TGSGKTAAFLLPILSQIYSDGPGEALRAMKDSLTLVFVETKKGADSLEDFLYHEGYACTS 329

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +H +    +R E +   R GK  +LV   +   GLDI     V   D             
Sbjct: 330 IHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFD-----LPSDIEEY 384

Query: 672 IQTIGRAARNVNSK 685
           +  IGR  R  N  
Sbjct: 385 VHRIGRTGRVGNLG 398


>gi|328855473|gb|EGG04599.1| hypothetical protein MELLADRAFT_78286 [Melampsora larici-populina
           98AG31]
          Length = 646

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 14/191 (7%)

Query: 524 TTIVVSAT-PGSWEL---EQCQGIIVEQIIR---PTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   ++   +  +  I   + R    +  +   VE      +   + D + 
Sbjct: 357 QTLMFSATFPRDIQMLAKDFLKDYIFLSVGRVGSTSENITQKVEYVEDADKRSVLLDILT 416

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              Q GL  L+ V TKRMA+ L  +L   N     +H +    ER   +   R  +  ++
Sbjct: 417 SMPQGGL-TLVFVETKRMADMLEGFLVSSNFAATSIHGDRTQRERERALETFRSSRTPIM 475

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V   +   GLDIP    V   D             +  IGR  R  N+ V   + +   K
Sbjct: 476 VATAVAARGLDIPNVTHVVNYD-----LPSDIDDYVHRIGRTGRAGNTGVSTAFFNRGNK 530

Query: 696 SIQLAIDETTR 706
           +I   + E  R
Sbjct: 531 NIVRELIELLR 541


>gi|302798402|ref|XP_002980961.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii]
 gi|300151500|gb|EFJ18146.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii]
          Length = 653

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 5/118 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+   TK   E+L ++L +   +V  +H +     R+++++  + G+F VLV  ++   
Sbjct: 431 VLVFASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVLVATDVAAR 490

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDI     V   D  K+         +  +GR  R  + + + Y     K  + A D
Sbjct: 491 GLDIKSIKTVVNYDTAKDMDTH-----VHRVGRTGRAGDKEGVAYTLVTQKEARFAGD 543


>gi|294084931|ref|YP_003551691.1| putative DEAD box ATP-dependent RNA helicase protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664506|gb|ADE39607.1| putative DEAD box ATP-dependent RNA helicase protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 651

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 89/231 (38%), Gaps = 30/231 (12%)

Query: 493 RKATLAEYG---------FRLPSCMDNRPLRFEEWNCLR-------PTTIVVSAT--PGS 534
           R   L E G         + L        L F                T++ SAT  P  
Sbjct: 150 RLMDLMERGSFDPSGITHWILDEADHMLDLGFYPAMKHISASLPADRQTMLFSATMPPEI 209

Query: 535 WELEQCQGIIVEQIIRP-TGLVDPPVEIRSAR----TQVEDVYDEINLAAQQGLRILLTV 589
            +L        E++  P +G+    +  R        + + + D +N   +   + L+ V
Sbjct: 210 EKLGNEFLTDPERVKAPQSGITADKITQRVTLMAEADKRDRLCDVLNH--EDTGQCLIFV 267

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            TKR A+ L++++ +R   V  +H +++   R +++R+ R G+   L+  ++   G+DI 
Sbjct: 268 RTKRRADALSKFMEDRGFAVDTLHGDMRQGLRQKVLRNFRDGRLQGLIATDVAARGIDIA 327

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
               V   D        +  + +  IGR  R     + L   + ++  +LA
Sbjct: 328 GLSHVVNFD-----LTDTPEAYVHRIGRTGRAGLGGLALSFCSPSEEPRLA 373


>gi|240279271|gb|EER42776.1| ATP-dependent RNA helicase DHH1 [Ajellomyces capsulatus H143]
 gi|325089541|gb|EGC42851.1| ATP-dependent RNA helicase DHH1 [Ajellomyces capsulatus H88]
          Length = 514

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 35/226 (15%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 214 SFHPKDRQVMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVH- 272

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+++    R  
Sbjct: 273 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNR 324

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 325 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 379

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +          L   E     E Q          PQS+ +K+
Sbjct: 380 LGLAINLINWEDRYNLYKIEQELGTEIQ--------PIPQSIDKKL 417


>gi|238925630|ref|YP_002939147.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC
           33656]
 gi|238877306|gb|ACR77013.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC
           33656]
 gi|291524137|emb|CBK89724.1| Superfamily II DNA and RNA helicases [Eubacterium rectale DSM
           17629]
 gi|291527820|emb|CBK93406.1| Superfamily II DNA and RNA helicases [Eubacterium rectale M104/1]
          Length = 530

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 64/168 (38%), Gaps = 10/168 (5%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
             T++ SAT   P      + Q   +   I    L    ++      + +D  D +    
Sbjct: 179 HQTVLFSATMPKPILEITRKYQHDAINIKIVKKELTVANIDQYYYDVKRKDKIDVLTRLL 238

Query: 580 Q--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                   L+   TK+M ++L   L  R      +H ++K ++R  ++++ R GK D+L+
Sbjct: 239 DYYNPKLSLVFCNTKKMVDELAYELCGRGYSAEGLHGDMKQVQRDRVMKNFRNGKTDILI 298

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             ++   G+D+ +   V   D       +     +  IGR  R     
Sbjct: 299 ATDVAARGIDVDDVEAVFNYD-----LPQDDEYYVHRIGRTGRAGRCG 341


>gi|254572992|ref|XP_002493605.1| Essential ATP-dependent RNA helicase of the DEAD-box protein family
           [Pichia pastoris GS115]
 gi|238033404|emb|CAY71426.1| Essential ATP-dependent RNA helicase of the DEAD-box protein family
           [Pichia pastoris GS115]
 gi|328354565|emb|CCA40962.1| ATP-dependent RNA helicase DDX5/DBP2 [Pichia pastoris CBS 7435]
          Length = 537

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 60/145 (41%), Gaps = 7/145 (4%)

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           +   +E+ S   + + +   +  A++ +  +IL+   TKR  ++LT YL         +H
Sbjct: 319 IKQVIEVLSEYEKRDRLTKYLEQASEDKTSKILVFASTKRTCDELTTYLRSDGWPALAIH 378

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            + +  ER  ++++ R GK  ++V  ++   G+D+     V   D        +    + 
Sbjct: 379 GDKEQRERDWVLQEFRSGKSPIMVATDVAARGIDVKGINFVVNYD-----MPGNIEDYVH 433

Query: 674 TIGRAARNVNSK-VILYADTITKSI 697
            IGR  R   +   + +       +
Sbjct: 434 RIGRTGRAGATGTAVSFFTNANARM 458


>gi|225559536|gb|EEH07818.1| ATP-dependent RNA helicase DHH1 [Ajellomyces capsulatus G186AR]
          Length = 511

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 35/226 (15%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 214 SFHPKDRQVMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVH- 272

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+++    R  
Sbjct: 273 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNR 324

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 325 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 379

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +          L   E     E Q          PQS+ +K+
Sbjct: 380 LGLAINLINWEDRYNLYKIEQELGTEIQ--------PIPQSIDKKL 417


>gi|221105179|ref|XP_002169963.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 597

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 5/117 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   +K  A+ LTE+L      V  +HS+   LER +++ D R   FDVLV  +L+  
Sbjct: 373 VIIFTNSKAKADSLTEFLLAEQFHVAAIHSDKTQLERNQVLSDFRENLFDVLVATDLMSR 432

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           GLDI     V   D        +    I   GR  R     +     T+   I   +
Sbjct: 433 GLDIVTVTHVINFDT-----PDTIEDYIHRCGRTGRFGRPGLATTFLTLDCKISKEL 484


>gi|209549507|ref|YP_002281424.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535263|gb|ACI55198.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 505

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 60/181 (33%), Gaps = 13/181 (7%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVED-----VYDEI 575
            T+  SAT  P   +L        E+I +         V  R   +  +D     V  E+
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLREL 239

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A  +    ++    K+   DL   L      V  +H ++    R   ++  R G   +
Sbjct: 240 VRAQTELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNLQL 299

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP+   V   D             +  IGR  R   S       T   
Sbjct: 300 LVASDVAARGLDIPDVSHVFNFDVPI-----HSEDYVHRIGRTGRAGRSGASFTLVTKRD 354

Query: 696 S 696
           S
Sbjct: 355 S 355


>gi|194387478|dbj|BAG60103.1| unnamed protein product [Homo sapiens]
          Length = 603

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 294 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 343

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 344 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 403

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 404 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 438


>gi|154270258|ref|XP_001535985.1| hypothetical protein HCAG_09069 [Ajellomyces capsulatus NAm1]
 gi|150410056|gb|EDN05444.1| hypothetical protein HCAG_09069 [Ajellomyces capsulatus NAm1]
          Length = 457

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 35/226 (15%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 157 SFHPKDRQVMLFSATFPMIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVH- 215

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+++    R  
Sbjct: 216 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNR 267

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 268 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 322

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +          L   E     E Q          PQS+ +K+
Sbjct: 323 LGLAINLINWEDRYNLYKIEQELGTEIQ--------PIPQSIDKKL 360


>gi|91791813|ref|YP_561464.1| ATP-dependent RNA helicase RhlB [Shewanella denitrificans OS217]
 gi|123166515|sp|Q12S35|RHLB_SHEDO RecName: Full=ATP-dependent RNA helicase rhlB
 gi|91713815|gb|ABE53741.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 432

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 82/253 (32%), Gaps = 34/253 (13%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNR 511
           + +Y        V +  +++  I  +   +  R   L   GF         R+P      
Sbjct: 145 IIDY--------VRQGVISLNSIQAVVLDEADRMFDL---GFIKDIRFLFRRMPDASSRL 193

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            + F     ++   +         ++E        + I+        +   S   ++  +
Sbjct: 194 NMLFSATLSMKVQELAYDHMNDPEKVEVTPEEKTSKNIK------EEIFYPSTEDKMRLL 247

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
              +        + ++   TK   E+L  +L     RV  +  +V   +RI I+     G
Sbjct: 248 LTLMEE--DWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSG 305

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
             DVLV  ++   GL I +   V   D             +  IGR  R  N  V + +A
Sbjct: 306 DLDVLVATDVAARGLHISDVSHVYNYD-----LPDDCEDYVHRIGRTGRAGNKGVSVSFA 360

Query: 691 DTITKSIQLAIDE 703
                    AI++
Sbjct: 361 CETYALNLPAIEQ 373


>gi|74354729|gb|AAI03319.1| DDX5 protein [Bos taurus]
          Length = 671

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 362 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 411

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 412 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 471

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 472 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 506


>gi|73953218|ref|XP_536417.2| PREDICTED: similar to Probable ATP-dependent helicase DDX41
           (DEAD-box protein 41) (DEAD-box protein abstrakt
           homolog) isoform 1 [Canis familiaris]
          Length = 622

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 348 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 401

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 402 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 460

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 461 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 515

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 516 YVHRIGRTGRSGNTGIATTF------INKACDES 543


>gi|74210167|dbj|BAE21355.1| unnamed protein product [Mus musculus]
          Length = 690

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 380 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 429

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 430 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 489

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 490 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 524


>gi|16130501|ref|NP_417071.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89109382|ref|AP_003162.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|170082185|ref|YP_001731505.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238901741|ref|YP_002927537.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|134878|sp|P21507|SRMB_ECOLI RecName: Full=ATP-dependent RNA helicase srmB
 gi|42996|emb|CAA32364.1| SrmB protein [Escherichia coli]
 gi|285777|dbj|BAA02447.1| putative ATP dependent RNA helicase [Escherichia coli]
 gi|987650|dbj|BAA10922.1| putative ATP dependent RNA helicase [Escherichia coli K-12]
 gi|1788930|gb|AAC75629.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675467|dbj|BAE76752.1| ATP-dependent RNA helicase [Escherichia coli str. K12 substr.
           W3110]
 gi|169890020|gb|ACB03727.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238860047|gb|ACR62045.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|260448344|gb|ACX38766.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|315137200|dbj|BAJ44359.1| ATP-dependent RNA helicase SrmB [Escherichia coli DH1]
          Length = 444

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 90/253 (35%), Gaps = 17/253 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT  G    +  + ++ + + +          +I     + +D+  +  L  
Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DIP+   V   D  + G      + +  IGR AR       +      
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSG-----DTYLHRIGRTARAGRKGTAISLVEAH 355

Query: 695 KSIQLA-----IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
             + L      I+E  + R       K    + +   +   +V+     +  A       
Sbjct: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415

Query: 750 AQQLSLSKKKGKA 762
            ++     K    
Sbjct: 416 VKKRHRDTKNIGK 428


>gi|21244553|ref|NP_644135.1| ATP-dependent RNA helicase RhlB [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|32363346|sp|Q8PFZ3|RHLB_XANAC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|21110227|gb|AAM38671.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 571

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+              +  +             + + GF      D R L   
Sbjct: 141 TPGRLIDYV----------KQHKVVSLHACEICVLDEADRMFDLGFI----KDIRFLLRR 186

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIR---SARTQVED 570
                   T++ SAT     LE     + E    ++    +    V  R    +  + + 
Sbjct: 187 MPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEEKQT 246

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +   ++ G R ++ V TK   E +   L     RV  +  +V   +R  ++   + 
Sbjct: 247 LLLGLLSRSE-GARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G+ ++LV  ++   GL I     V   D             +  IGR AR       I +
Sbjct: 306 GQLEILVATDVAARGLHIDGVKYVYNYD-----LPFDAEDYVHRIGRTARLGEEGDAISF 360

Query: 690 ADT 692
           A  
Sbjct: 361 ACE 363


>gi|149907510|ref|ZP_01896257.1| Helicase [Moritella sp. PE36]
 gi|149809180|gb|EDM69109.1| Helicase [Moritella sp. PE36]
          Length = 615

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 24/200 (12%)

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPP---VEIRSARTQVEDVYDEINLAAQQGL 583
           ++S TP   ++      + E+I R T         V+I +  + VE++  +  +      
Sbjct: 175 ILSKTPAERQMALFSATMPEEIRRITKRFMTNPTSVKIANKTSTVENIEQKCLIIGGLQA 234

Query: 584 R---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +               +++   TK M  +L E L  R      ++ ++    R   +  L
Sbjct: 235 KLDGLTRILETEDYDGVIIFARTKTMTVELAEKLEARGYSAAALNGDLNQAMRERTVSRL 294

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           + G+ D+++  ++   GLD+P   LV   D           S +  IGR  R       I
Sbjct: 295 KSGQLDIVIATDVAARGLDVPRIDLVINYD-----IPTDTESYVHRIGRTGRAGRKGTAI 349

Query: 688 LYADTITKSIQLAIDETTRR 707
           L+A    + +  AI+  TR+
Sbjct: 350 LFAAPRERRLLKAIERATRQ 369


>gi|109478564|ref|XP_234443.4| PREDICTED: DEAD-box protein abstrakt-like [Rattus norvegicus]
          Length = 621

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 347 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 400

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 401 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAKKKADVDAIHEYLLLKGVEAV 459

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 460 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 514

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 515 YVHRIGRTGRSGNTGIATTF------INKACDES 542


>gi|18857967|ref|NP_572424.1| CG10777 [Drosophila melanogaster]
 gi|7290853|gb|AAF46295.1| CG10777 [Drosophila melanogaster]
 gi|16648356|gb|AAL25443.1| LD32873p [Drosophila melanogaster]
 gi|220947598|gb|ACL86342.1| CG10777-PB [synthetic construct]
          Length = 945

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 9/162 (5%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           +       + QI+         +E       + +    I  +   G +I++ V TK   E
Sbjct: 450 MNLSANHNIRQIVEIC----TEIEKPQRLVCLLNEISPIKNSGNNGNKIIVFVETKIKVE 505

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           D+ + +         +H +    ER  +++D R GK ++L+  ++   GLD+ +   V  
Sbjct: 506 DILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVIN 565

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            D     +  S  + +  IGR  R           T   + Q
Sbjct: 566 YD-----YPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQ 602


>gi|47226828|emb|CAG06670.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 434

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 55/152 (36%), Gaps = 7/152 (4%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
           S  + Q    + E   R   L      +  +  Q ++  D I    +  L  L+ V TK+
Sbjct: 145 SENITQKVVWVEESDKRSFLLDLLSATVIPSEVQ-DNTGDNIEKPGKDSL-TLVFVETKK 202

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ L ++LY        +H +    +R E +   R GK  +LV   +   GLDI     
Sbjct: 203 GADALEDFLYREGYACTSIHGDRSQRDREEALSQFRSGKCPILVATAVAARGLDISNVKH 262

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           V   D             +  IGR  R  N  
Sbjct: 263 VINFD-----LPSDIEEYVHRIGRTGRVGNLG 289


>gi|148906344|gb|ABR16327.1| unknown [Picea sitchensis]
          Length = 504

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 15/187 (8%)

Query: 524 TTIVVSAT-PGSWEL-------EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   EL          + II    ++    ++  VEI S   +   +   +
Sbjct: 279 QTLYWSATWPKEVELLARQSLHNPYKVIIGSSDLKANHAIEQIVEIVSEHEKYTRLIQLL 338

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G R+L+ + TK+  + +T  L         +H +    ER  ++ + + GK  +
Sbjct: 339 EE-IMDGSRLLIFLETKKGCDQVTRKLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPI 397

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  S    +  IGR  R        Y      
Sbjct: 398 MTATDVAARGLDVKDIKCVINYD-----FPGSMEDYVHRIGRTGRAGAKGTA-YTYFTAA 451

Query: 696 SIQLAID 702
           + + A D
Sbjct: 452 NARFARD 458


>gi|149726038|ref|XP_001502240.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX41
           (DEAD box protein 41) (DEAD box protein abstrakt
           homolog) [Equus caballus]
          Length = 622

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 348 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 401

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 402 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 460

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 461 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 515

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 516 YVHRIGRTGRSGNTGIATTF------INKACDES 543


>gi|120538559|gb|AAI29874.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
          Length = 615

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 354

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 414

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 415 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 449


>gi|15827355|ref|NP_301618.1| ATP-dependent RNA helicase [Mycobacterium leprae TN]
 gi|221229833|ref|YP_002503249.1| putative ATP-dependent RNA helicase [Mycobacterium leprae Br4923]
 gi|13092904|emb|CAC30321.1| putative ATP-dependent RNA helicase [Mycobacterium leprae]
 gi|219932940|emb|CAR70906.1| putative ATP-dependent RNA helicase [Mycobacterium leprae Br4923]
          Length = 544

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 7/134 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   I  A  +G   ++   TKR A+ +T  L ER   V  +H ++  + R   +   R
Sbjct: 274 ELISRILQARGRG-ATMIFTRTKRTAQKVTNELNERGFAVGAVHGDLGQIARENALEAFR 332

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G  DVLV  ++   G+DI +   V             +   +  IGR  R   + V + 
Sbjct: 333 TGNVDVLVATDVAARGIDIDDVTHVINY-----QCPEDEKMYVHRIGRTGRAGRTGVAVT 387

Query: 689 YADTITKSIQLAID 702
             D         ID
Sbjct: 388 LVDWDELHRWETID 401


>gi|327275873|ref|XP_003222696.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Anolis
           carolinensis]
          Length = 924

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 71/187 (37%), Gaps = 15/187 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEIR-SARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      +   VEI  S   +   +   +
Sbjct: 433 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDITQIVEIFASGPNKWNWLTSRL 492

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D + G F V
Sbjct: 493 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHSLGLLHGDMDQSERNKVISDFKKGAFPV 551

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V  Y     K
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVA-YTLLTHK 605

Query: 696 SIQLAID 702
               A D
Sbjct: 606 DSNFAGD 612


>gi|296314174|ref|ZP_06864115.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
           ATCC 43768]
 gi|296839180|gb|EFH23118.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
           ATCC 43768]
          Length = 457

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKDPEVI--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|209762788|gb|ACI79706.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|320646171|gb|EFX15111.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H- str.
           493-89]
 gi|320651466|gb|EFX19862.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H- str. H
           2687]
          Length = 444

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 90/253 (35%), Gaps = 17/253 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT  G    +  + ++ + + +          +I     + +D+  +  L  
Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DIP+   V   D  + G      + +  IGR AR       +      
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSG-----DTYLHRIGRTARAGRKGTAISLVEAH 355

Query: 695 KSIQLA-----IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
             + L      I+E  + R       K    + +   +   +V+     +  A       
Sbjct: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415

Query: 750 AQQLSLSKKKGKA 762
            ++     K    
Sbjct: 416 VKKRHRDTKNIGK 428


>gi|205364353|gb|ACI04543.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Rattus norvegicus]
          Length = 614

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 354

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 414

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 415 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 449


>gi|326795184|ref|YP_004313004.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326545948|gb|ADZ91168.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 619

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 77/198 (38%), Gaps = 20/198 (10%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK    +L E L  R      ++ ++    R   +  ++ G+ D+LV  +++  
Sbjct: 250 MIIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDILVATDVVAR 309

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     + +   I+ 
Sbjct: 310 GLDVDRVSHVVNYD-----IPYDTESYVHRIGRTGRAGRSGTAILFVGHRERRMLQQIER 364

Query: 704 TTRRREKQLEHNKKHNINPQSVKE---KIMEVID-----------PILLEDAATTNISID 749
            TR+  ++++     +IN Q V     +I + ID               ++     + + 
Sbjct: 365 ATRQAIERMQLPTASDINEQRVARFKQRITDTIDNEDLDFFIELAASYQKENDVDPVKLG 424

Query: 750 AQQLSLSKKKGKAHLKSL 767
           A    +++ K    LK L
Sbjct: 425 AALAHMAQGKTPLLLKEL 442


>gi|325291138|ref|YP_004267319.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324966539|gb|ADY57318.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 518

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 77/198 (38%), Gaps = 17/198 (8%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVE--------QIIRPTGLVDPPVEIRSARTQVEDV 571
             +  T++ SAT     L   +  ++E        + +         VE+   R + + +
Sbjct: 173 QHKHQTLLFSATMPQSILNLSKRFMLEPEFISIKAKEVTVPNTEQYYVEL-PERQKFDVL 231

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
              ++   Q     ++   TKR  ++L E L +R      +H ++  L R  ++R  + G
Sbjct: 232 CRLLD--IQSPDLAIVFGRTKRRVDELYEALNKRGYSAEGIHGDLTQLRRDSVLRHFKEG 289

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYA 690
             D+LV  ++   GLDI     +   D       +   S +  IGR  R   +   + + 
Sbjct: 290 VTDILVATDVAARGLDISGVTHIYNFD-----IPQDPESYVHRIGRTGRAGKTGLAVTFV 344

Query: 691 DTITKSIQLAIDETTRRR 708
                +    I++ T+RR
Sbjct: 345 TPRELNHLRLIEQVTKRR 362


>gi|311743209|ref|ZP_07717016.1| DeaD protein [Aeromicrobium marinum DSM 15272]
 gi|311313277|gb|EFQ83187.1| DeaD protein [Aeromicrobium marinum DSM 15272]
          Length = 567

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 69/193 (35%), Gaps = 15/193 (7%)

Query: 523 PTTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
               + SAT            L     +      R T  V           + + +   +
Sbjct: 181 KQVALFSATMPPAIRRLAKKYLNDPVDVATPAATRSTTTVRQRWISVPHHGKFDALTRLL 240

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               + G  +++ V TK+  E+L E L  R      ++ ++   +R  I+  L+ G  D+
Sbjct: 241 E--VENGDGMIIFVRTKQATEELAEKLRSRGFDAAALNGDLVQAQRERIVGQLKGGSLDI 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLD+     V   D           S +  IGR  R   S   +L+     
Sbjct: 299 LVATDVAARGLDVDRITHVINHD-----IPHDAESYVHRIGRTGRAGRSGEAVLFVTPRE 353

Query: 695 KSIQLAIDETTRR 707
           + +  AI++ + R
Sbjct: 354 RRMLSAIEKVSGR 366


>gi|300741894|ref|ZP_07071915.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
 gi|300381079|gb|EFJ77641.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
          Length = 582

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 84/234 (35%), Gaps = 25/234 (10%)

Query: 479 TIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGSWEL 537
           T+ Q+  +   +        + GF LPS       +   +      T++ SAT PG    
Sbjct: 172 TLTQVKTVVLDEADEM---LDLGF-LPSVE-----KIMGYLPTDRQTMLFSATMPGPVIT 222

Query: 538 EQCQGIIVEQIIR---PTGLVDPPVEIRSARTQV-----EDVYDEINLAAQQGLRILLTV 589
              + +     I    P         IR    +V     +++   I  A  +G R ++  
Sbjct: 223 MARKYMTKPMHISAADPEDHAKTKASIRQVVYRVHHMDKDEMLGRILRAHGRG-RTVIFT 281

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            TKR A  + + L  R      +H ++    R + +R  R GK D+LV  ++   G+D+ 
Sbjct: 282 KTKRDAARVADELIARGFAAAPLHGDLNQGAREQALRAFRNGKVDILVATDVAARGIDVE 341

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAID 702
           +   V             + + +   GR  R  +    + + D    +    I+
Sbjct: 342 DVTHVINHRV-----PEDEKTYLHRTGRTGRAGHEGTAVTFVDWEDIARWRLIN 390


>gi|239918236|ref|YP_002957794.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
 gi|239839443|gb|ACS31240.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
          Length = 731

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 70/184 (38%), Gaps = 6/184 (3%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +    ++  V T+   E+L + L     +   +  ++   +R + + DL+ G+ D+LV 
Sbjct: 314 TEDHEGVIAFVRTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKTGRVDILVA 373

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLD+     V   D       +   S +  IGR  R       +L+     + +
Sbjct: 374 TDVAARGLDVERISHVINYD-----IPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFL 428

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
              I+ TTR++ +++      ++N    +     +   +         +  +     + +
Sbjct: 429 LKQIERTTRQQVEEMAVPSVADVNAARKRRFADGITRTLERASEEELAVFGEIVAAYVDE 488

Query: 758 KKGK 761
            + +
Sbjct: 489 HEAE 492


>gi|169618000|ref|XP_001802414.1| hypothetical protein SNOG_12185 [Phaeosphaeria nodorum SN15]
 gi|160703529|gb|EAT80597.2| hypothetical protein SNOG_12185 [Phaeosphaeria nodorum SN15]
          Length = 498

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 93/286 (32%), Gaps = 43/286 (15%)

Query: 465 IPEDSLLFVDESHVTIP------QISGMYRGDFHRKATLA--EYGFRLPSCMDNRPLRFE 516
           + +D +   D  H+ +        ++G    D     T    E    L         +  
Sbjct: 133 LKDDIIRLSDPVHIIVGTPGRILDLAGKGVADLSTCQTFVMDEADKLLSPEFTPVVEQLL 192

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT                +E+     + +  I +    V+   ++  
Sbjct: 193 GFHPKDRQVMLFSATFPIVVKTFKDKHMNSPYEINLMDELTLRGITQYYAFVEEKQKVH- 251

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 252 -------CLNTLFNKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNR 303

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 304 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 358

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +       ++    D     R +Q    +   I PQ +++ +
Sbjct: 359 LGLAI-------NLINWEDRFNLYRIEQELGTEIQPI-PQVIEKNL 396


>gi|118582182|sp|Q0U7S9|DHH1_PHANO RecName: Full=ATP-dependent RNA helicase DHH1
          Length = 522

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 93/286 (32%), Gaps = 43/286 (15%)

Query: 465 IPEDSLLFVDESHVTIP------QISGMYRGDFHRKATLA--EYGFRLPSCMDNRPLRFE 516
           + +D +   D  H+ +        ++G    D     T    E    L         +  
Sbjct: 157 LKDDIIRLSDPVHIIVGTPGRILDLAGKGVADLSTCQTFVMDEADKLLSPEFTPVVEQLL 216

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT                +E+     + +  I +    V+   ++  
Sbjct: 217 GFHPKDRQVMLFSATFPIVVKTFKDKHMNSPYEINLMDELTLRGITQYYAFVEEKQKVH- 275

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 276 -------CLNTLFNKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNR 327

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 328 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 382

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +       ++    D     R +Q    +   I PQ +++ +
Sbjct: 383 LGLAI-------NLINWEDRFNLYRIEQELGTEIQPI-PQVIEKNL 420


>gi|110740927|dbj|BAE98559.1| eukaryotic protein synthesis initiation factor 4A [Arabidopsis
           thaliana]
          Length = 412

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 203 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKE 262

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 263 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 320

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 321 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 375

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 376 GVAINFVTRDDERMLFDI 393


>gi|75319612|sp|Q41382|RH7_SPIOL RecName: Full=DEAD-box ATP-dependent RNA helicase 7
 gi|1488647|emb|CAA68193.1| RNA helicase [Spinacia oleracea]
          Length = 685

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 98/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSATPGSW----------ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
            T++ SAT  SW            ++   ++ +Q ++ +  V   V I  + +   D+  
Sbjct: 294 QTLLFSATLPSWVKQISTRFLKSAKKTVDLVSDQKMKASISVRHIV-IPCSASARPDLIP 352

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +I      G R ++   TK  A  L   L       R +H +++  +R   ++  R GKF
Sbjct: 353 DIIRCYGSGGRSIIFTETKESASQLAGLLT----GARPLHGDIQQTQREVTLKGFRTGKF 408

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
             LV  N+   GLDI +  L+   +  ++         I   GR  R  N+ V +     
Sbjct: 409 MTLVATNVAARGLDINDVQLIIQCEPPRDV-----EDYIHRSGRTGRAGNTGVAVMLYDP 463

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
            +S    I+     RE  ++        P  V + +       +L+ + +   +      
Sbjct: 464 KRSSVTKIE-----RESGVKFEHLSAPQPVDVAKAVGIEAAAAILQISDSVIPAFKDAAE 518

Query: 754 SLSKKKGKAHLKSLRKQMHLAA 775
            L    G + +  L K +  AA
Sbjct: 519 ELLSTSGLSAVDILSKALAKAA 540


>gi|325128442|gb|EGC51323.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           N1568]
          Length = 462

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKDPEII--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|298385617|ref|ZP_06995175.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
 gi|298261758|gb|EFI04624.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
          Length = 413

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 76/193 (39%), Gaps = 28/193 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       ++II+   +            Q + 
Sbjct: 182 QTIMFSATMPAKIQQLAKTILNNPAEIKLAVSRPADKIIQAAYVC--------YENQ-KL 232

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                    +   R+++   +K   +++T+ L    + V  MHS+++  +R  ++ + + 
Sbjct: 233 GIIRSLFTDEVPERVIIFASSKIKVKEVTKALKMMKLNVGEMHSDLEQAQREVVMHEFKA 292

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+ ++LV  +++  G+DI +  LV   D             +  IGR AR  N  V + +
Sbjct: 293 GRINILVATDIVARGIDIDDIRLVINFDV-----PHDSEDYVHRIGRTARANNDGVALTF 347

Query: 690 ADTITKSIQLAID 702
                +S   +I+
Sbjct: 348 ISEKEQSNFKSIE 360


>gi|297847848|ref|XP_002891805.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337647|gb|EFH68064.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 412

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 203 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKE 262

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 263 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 320

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 321 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 375

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 376 GVAINFITRDDERMLFDI 393


>gi|289705043|ref|ZP_06501454.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
 gi|289558206|gb|EFD51486.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
          Length = 715

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 6/130 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ++  V T+   E+L + L     +   +  ++   +R + + DL+ G+ D+LV  ++   
Sbjct: 296 VIAFVRTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKAGRVDILVATDVAAR 355

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D       +   S +  IGR  R       +L+     + +   I+ 
Sbjct: 356 GLDVERISHVVNYD-----IPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFLLKQIER 410

Query: 704 TTRRREKQLE 713
           TTR++ +++ 
Sbjct: 411 TTRQQVEEMA 420


>gi|195355988|ref|XP_002044465.1| GM11962 [Drosophila sechellia]
 gi|194131630|gb|EDW53672.1| GM11962 [Drosophila sechellia]
          Length = 946

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 9/162 (5%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           +       + QI+         +E       + +    I  +   G +I++ V TK   E
Sbjct: 451 MNLSANHNIRQIVEIC----TEIEKPQRLVCLLNEISPIKKSGSNGNKIIVFVETKIKVE 506

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           D+ + +         +H +    ER  +++D R GK ++L+  ++   GLD+ +   V  
Sbjct: 507 DILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVIN 566

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            D     +  S  + +  IGR  R           T   + Q
Sbjct: 567 YD-----YPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQ 603


>gi|194743932|ref|XP_001954452.1| GF16725 [Drosophila ananassae]
 gi|190627489|gb|EDV43013.1| GF16725 [Drosophila ananassae]
          Length = 693

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 65/180 (36%), Gaps = 13/180 (7%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            TI+ SAT  PG   L Q       Q+      +  T  V   +E+     +        
Sbjct: 447 QTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIELLQDDAEKFQTIKSF 506

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               ++  +I++    K  A+DL+  L       + +H      +R + I D++ G   +
Sbjct: 507 VKNMRKTDKIIVFCGRKARADDLSSDLTLDGFCTQCIHGNRDQSDREQAIADIKSGAVRI 566

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI +   V   D     F R+    +  +GR  R       +   T   
Sbjct: 567 LVATDVASRGLDIEDISHVINYD-----FPRNIEEYVHRVGRTGRAGRKGTSISFVTRED 621


>gi|114603670|ref|XP_001144645.1| PREDICTED: DEAD-box protein abstrakt isoform 1 [Pan troglodytes]
          Length = 606

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 332 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 385

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 386 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 444

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 445 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 499

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 500 YVHRIGRTGRSGNTGIATTF------INKACDES 527


>gi|299140955|ref|ZP_07034093.1| ATP-dependent RNA helicase DeaD [Prevotella oris C735]
 gi|298577921|gb|EFI49789.1| ATP-dependent RNA helicase DeaD [Prevotella oris C735]
          Length = 542

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 28/242 (11%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
            TI+ SAT P   E      +   ++I+           +SA    E     I     + 
Sbjct: 183 QTIMFSATMPDKIEDLAKTLLKNPKVIKLAVSKPAEKIKQSAYVCYETQKMGIIKDIFKN 242

Query: 583 ---LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               R+++   +K   + +   L  ++I    MHS++    R +++   + G+FDVLV  
Sbjct: 243 GDLERVIIFCGSKLKVKQVAGALQRKHINCGEMHSDLDQATRDDVMFKFKSGQFDVLVAT 302

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +++  G+DI +  +V   D             +  IGR AR       +   +       
Sbjct: 303 DIVARGIDIDDIAMVINYDV-----PHDAEDYVHRIGRTARAAREGSAITFVSEDDIYYF 357

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
                     +Q+E         + +++++ +   P+ L D      +   ++ S +K +
Sbjct: 358 ----------QQIE---------KFLEKEVEKTPLPVGLGDGPEYKSAGKPKRGSSAKSR 398

Query: 760 GK 761
            +
Sbjct: 399 RR 400


>gi|219870628|ref|YP_002475003.1| ATP-dependent RNA helicase RhlB [Haemophilus parasuis SH0165]
 gi|219690832|gb|ACL32055.1| ATP-dependent RNA helicase RhlB [Haemophilus parasuis SH0165]
          Length = 406

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   E++  YL     RV  +  ++   +R+ ++     G+ D+LV  ++  
Sbjct: 255 RCIVFANTKHKCEEIWSYLSADGHRVGLLTGDIPQKKRLALLDSFTQGELDILVATDVAA 314

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
            GL IP+   V   D         +   +  IGR  R   S V I +A         AI+
Sbjct: 315 RGLHIPDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFACERYAVNLPAIE 369

Query: 703 E 703
           E
Sbjct: 370 E 370


>gi|195330800|ref|XP_002032091.1| GM23704 [Drosophila sechellia]
 gi|194121034|gb|EDW43077.1| GM23704 [Drosophila sechellia]
          Length = 699

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 74/207 (35%), Gaps = 17/207 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            TI+ SAT  PG   L Q       Q+      +  T  V   +++        +     
Sbjct: 454 QTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIKLMEDDMAKFNTITSF 513

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   +I++    K  A+DL+  L       + +H     ++R + I D++ G   +
Sbjct: 514 VKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRI 573

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI +   V   D     F R+    +  +GR  R       +   T   
Sbjct: 574 LVATDVASRGLDIEDITHVINYD-----FPRNIEEYVHRVGRTGRAGRQGTSISFFTRED 628

Query: 696 --SIQLAIDETTRRREKQLEHNKKHNI 720
               +  ID       +Q   ++ HN+
Sbjct: 629 WGMAKELIDILQE--AEQEVPDELHNM 653


>gi|167855638|ref|ZP_02478397.1| ornithine carbamoyltransferase [Haemophilus parasuis 29755]
 gi|167853265|gb|EDS24520.1| ornithine carbamoyltransferase [Haemophilus parasuis 29755]
          Length = 406

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   E++  YL     RV  +  ++   +R+ ++     G+ D+LV  ++  
Sbjct: 255 RCIVFANTKHKCEEIWSYLSADGHRVGLLTGDIPQKKRLALLDSFTQGELDILVATDVAA 314

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
            GL IP+   V   D         +   +  IGR  R   S V I +A         AI+
Sbjct: 315 RGLHIPDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFACERYAVNLPAIE 369

Query: 703 E 703
           E
Sbjct: 370 E 370


>gi|115637407|ref|XP_796437.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41,
           partial [Strongylocentrotus purpuratus]
 gi|115949877|ref|XP_001190893.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41,
           partial [Strongylocentrotus purpuratus]
          Length = 603

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 78/217 (35%), Gaps = 19/217 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTG-----LVDPPVEIRSARTQVEDVYDEINLA 578
            T++ SAT         +  +V  +    G      +D   E+   + Q   +   +   
Sbjct: 351 QTLLFSATMPKKIQNFAKSALVRPVTVNVGRAGAASLDVIQEVEYVK-QEAKMVYLLECL 409

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +    +L+    K   +D+ EYL  + +    +H      ER + I   R  + DVLV 
Sbjct: 410 QKAPPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEERTKSIEQFRAREKDVLVA 469

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++  +GLD P+   V   D           + +  IGR  R   + +          I 
Sbjct: 470 TDVASKGLDFPDIQHVINYD-----MPEDIENYVHRIGRTGRCGKTGIATTF------IN 518

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
            A DE+  R  K L    K  + P  V E I +  + 
Sbjct: 519 KACDESVLRDLKHLLIEAKQKLPP--VLEAIEDENEE 553


>gi|259485547|tpe|CBF82660.1| TPA: ATP-dependent RNA helicase (Eurofung) [Aspergillus nidulans
           FGSC A4]
          Length = 498

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 84/262 (32%), Gaps = 37/262 (14%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 207 SFHPKDRQVMLFSATFPMIVKSFKDRHMRNPYEINLMDELTLRGITQYYAFVEEKQKVH- 265

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 266 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNR 317

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 318 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 372

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK--IMEVIDPILLEDA 741
             + +          L   E     E Q          PQ++ +K  + +  D I    +
Sbjct: 373 LGLAINLINWDDRFNLYKIEQELGTEIQ--------PIPQNIDKKLYVYDSPDTIPRPIS 424

Query: 742 ATTNISIDAQQLSLSKKKGKAH 763
                S  A   S    +   H
Sbjct: 425 NPPQQSQGATAASNPSDRRHNH 446


>gi|170058665|ref|XP_001865019.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167877695|gb|EDS41078.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 686

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 12/148 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A+   + ++ V TKR  +D+T  +     R   +H +    ER  ++   R G+  +LV 
Sbjct: 360 AEAETKTIVFVETKRRVDDITRSICRNGWRAVSIHGDKSQQERDYVLNAFRNGRQGILVA 419

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  +    +  IGR  R+ N+    Y      +  
Sbjct: 420 TDVAARGLDVEDVKFVINYD-----YPSNSEDYVHRIGRTGRSNNTGTA-YTLFTNSNAN 473

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVK 726
            A D     RE          INP+ V+
Sbjct: 474 KAGDLINVLRE------ANQVINPKLVE 495


>gi|15832696|ref|NP_311469.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           Sakai]
 gi|24113917|ref|NP_708427.1| ATP-dependent RNA helicase SrmB [Shigella flexneri 2a str. 301]
 gi|26248941|ref|NP_754981.1| ATP-dependent RNA helicase SrmB [Escherichia coli CFT073]
 gi|30063977|ref|NP_838148.1| ATP-dependent RNA helicase SrmB [Shigella flexneri 2a str. 2457T]
 gi|74313139|ref|YP_311558.1| ATP-dependent RNA helicase SrmB [Shigella sonnei Ss046]
 gi|91211903|ref|YP_541889.1| ATP-dependent RNA helicase SrmB [Escherichia coli UTI89]
 gi|110642738|ref|YP_670468.1| ATP-dependent RNA helicase SrmB [Escherichia coli 536]
 gi|110806520|ref|YP_690040.1| ATP-dependent RNA helicase SrmB [Shigella flexneri 5 str. 8401]
 gi|117624797|ref|YP_853710.1| ATP-dependent RNA helicase SrmB [Escherichia coli APEC O1]
 gi|157162056|ref|YP_001459374.1| ATP-dependent RNA helicase SrmB [Escherichia coli HS]
 gi|168748352|ref|ZP_02773374.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757760|ref|ZP_02782767.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4401]
 gi|168765031|ref|ZP_02790038.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768681|ref|ZP_02793688.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773496|ref|ZP_02798503.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778555|ref|ZP_02803562.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790377|ref|ZP_02815384.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC869]
 gi|170019141|ref|YP_001724095.1| ATP-dependent RNA helicase SrmB [Escherichia coli ATCC 8739]
 gi|170684258|ref|YP_001744765.1| ATP-dependent RNA helicase SrmB [Escherichia coli SMS-3-5]
 gi|188494838|ref|ZP_03002108.1| ATP-dependent RNA helicase SrmB [Escherichia coli 53638]
 gi|191174027|ref|ZP_03035544.1| ATP-dependent RNA helicase SrmB [Escherichia coli F11]
 gi|193064108|ref|ZP_03045193.1| ATP-dependent RNA helicase SrmB [Escherichia coli E22]
 gi|194429273|ref|ZP_03061800.1| ATP-dependent RNA helicase SrmB [Escherichia coli B171]
 gi|194432156|ref|ZP_03064445.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae 1012]
 gi|194437565|ref|ZP_03069661.1| ATP-dependent RNA helicase SrmB [Escherichia coli 101-1]
 gi|195936724|ref|ZP_03082106.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208805922|ref|ZP_03248259.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813312|ref|ZP_03254641.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820708|ref|ZP_03261028.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397789|ref|YP_002272051.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920055|ref|YP_002294139.1| ATP-dependent RNA helicase SrmB [Escherichia coli SE11]
 gi|215487920|ref|YP_002330351.1| ATP-dependent RNA helicase SrmB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217327593|ref|ZP_03443676.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           TW14588]
 gi|218547896|ref|YP_002381687.1| ATP-dependent RNA helicase SrmB [Escherichia fergusonii ATCC 35469]
 gi|218555158|ref|YP_002388071.1| ATP-dependent RNA helicase SrmB [Escherichia coli IAI1]
 gi|218559497|ref|YP_002392410.1| ATP-dependent RNA helicase SrmB [Escherichia coli S88]
 gi|218696204|ref|YP_002403871.1| ATP-dependent RNA helicase SrmB [Escherichia coli 55989]
 gi|218701090|ref|YP_002408719.1| ATP-dependent RNA helicase SrmB [Escherichia coli IAI39]
 gi|218706079|ref|YP_002413598.1| ATP-dependent RNA helicase SrmB [Escherichia coli UMN026]
 gi|227887612|ref|ZP_04005417.1| ATP-dependent RNA helicase [Escherichia coli 83972]
 gi|237705086|ref|ZP_04535567.1| ATP-dependent RNA helicase SrmB [Escherichia sp. 3_2_53FAA]
 gi|253772524|ref|YP_003035355.1| ATP-dependent RNA helicase SrmB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162551|ref|YP_003045659.1| ATP-dependent RNA helicase SrmB [Escherichia coli B str. REL606]
 gi|254794527|ref|YP_003079364.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017274|ref|ZP_05431139.1| ATP-dependent RNA helicase SrmB [Shigella sp. D9]
 gi|256021737|ref|ZP_05435602.1| ATP-dependent RNA helicase SrmB [Escherichia sp. 4_1_40B]
 gi|260845261|ref|YP_003223039.1| ATP-dependent RNA helicase SrmB [Escherichia coli O103:H2 str.
           12009]
 gi|260856670|ref|YP_003230561.1| ATP-dependent RNA helicase SrmB [Escherichia coli O26:H11 str.
           11368]
 gi|260869263|ref|YP_003235665.1| ATP-dependent RNA helicase SrmB [Escherichia coli O111:H- str.
           11128]
 gi|261222988|ref|ZP_05937269.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259462|ref|ZP_05951995.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283852|ref|YP_003500670.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str.
           CB9615]
 gi|293406018|ref|ZP_06650010.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1412]
 gi|293410992|ref|ZP_06654568.1| ATP-dependent RNA helicase SrmB [Escherichia coli B354]
 gi|293415845|ref|ZP_06658488.1| ATP-dependent RNA helicase SrmB [Escherichia coli B185]
 gi|293446931|ref|ZP_06663353.1| ATP-dependent RNA helicase SrmB [Escherichia coli B088]
 gi|298381818|ref|ZP_06991417.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1302]
 gi|300820745|ref|ZP_07100895.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300898309|ref|ZP_07116657.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|300904240|ref|ZP_07122099.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300920744|ref|ZP_07137150.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1]
 gi|300927702|ref|ZP_07143270.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300935710|ref|ZP_07150679.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|300951705|ref|ZP_07165525.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300958783|ref|ZP_07170895.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300974119|ref|ZP_07172469.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300982280|ref|ZP_07175991.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|301021938|ref|ZP_07185897.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|301024863|ref|ZP_07188500.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|301047215|ref|ZP_07194307.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|301302943|ref|ZP_07209071.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|301648340|ref|ZP_07248080.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|306814360|ref|ZP_07448522.1| ATP-dependent RNA helicase SrmB [Escherichia coli NC101]
 gi|307139213|ref|ZP_07498569.1| ATP-dependent RNA helicase SrmB [Escherichia coli H736]
 gi|312965492|ref|ZP_07779724.1| ATP-dependent RNA helicase srmB [Escherichia coli 2362-75]
 gi|312973178|ref|ZP_07787350.1| ATP-dependent RNA helicase srmB [Escherichia coli 1827-70]
 gi|331643200|ref|ZP_08344335.1| ATP-dependent RNA helicase SrmB [Escherichia coli H736]
 gi|331648323|ref|ZP_08349412.1| ATP-dependent RNA helicase SrmB [Escherichia coli M605]
 gi|331654039|ref|ZP_08355040.1| ATP-dependent RNA helicase SrmB [Escherichia coli M718]
 gi|331658721|ref|ZP_08359665.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA206]
 gi|331669327|ref|ZP_08370175.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA271]
 gi|331674026|ref|ZP_08374789.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA280]
 gi|331678573|ref|ZP_08379248.1| ATP-dependent RNA helicase SrmB [Escherichia coli H591]
 gi|331684226|ref|ZP_08384822.1| ATP-dependent RNA helicase SrmB [Escherichia coli H299]
 gi|332278266|ref|ZP_08390679.1| ATP-dependent RNA helicase SrmB [Shigella sp. D9]
 gi|26109347|gb|AAN81549.1|AE016764_231 ATP-dependent RNA helicase srmB [Escherichia coli CFT073]
 gi|13362913|dbj|BAB36865.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. Sakai]
 gi|24053020|gb|AAN44134.1| ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
 gi|30042233|gb|AAP17958.1| ATP-dependent RNA helicase [Shigella flexneri 2a str. 2457T]
 gi|73856616|gb|AAZ89323.1| ATP-dependent RNA helicase [Shigella sonnei Ss046]
 gi|91073477|gb|ABE08358.1| ATP-dependent RNA helicase [Escherichia coli UTI89]
 gi|110344330|gb|ABG70567.1| ATP-dependent RNA helicase SrmB [Escherichia coli 536]
 gi|110616068|gb|ABF04735.1| ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
 gi|115513921|gb|ABJ01996.1| putative transcriptional regulator YfiE [Escherichia coli APEC O1]
 gi|157067736|gb|ABV06991.1| ATP-dependent RNA helicase SrmB [Escherichia coli HS]
 gi|169754069|gb|ACA76768.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|170521976|gb|ACB20154.1| ATP-dependent RNA helicase SrmB [Escherichia coli SMS-3-5]
 gi|187770668|gb|EDU34512.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017076|gb|EDU55198.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4113]
 gi|188490037|gb|EDU65140.1| ATP-dependent RNA helicase SrmB [Escherichia coli 53638]
 gi|189003613|gb|EDU72599.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355321|gb|EDU73740.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362179|gb|EDU80598.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365096|gb|EDU83512.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370150|gb|EDU88566.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC869]
 gi|190905718|gb|EDV65340.1| ATP-dependent RNA helicase SrmB [Escherichia coli F11]
 gi|192929343|gb|EDV82952.1| ATP-dependent RNA helicase SrmB [Escherichia coli E22]
 gi|194412681|gb|EDX28976.1| ATP-dependent RNA helicase SrmB [Escherichia coli B171]
 gi|194419685|gb|EDX35765.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae 1012]
 gi|194423371|gb|EDX39362.1| ATP-dependent RNA helicase SrmB [Escherichia coli 101-1]
 gi|208725723|gb|EDZ75324.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734589|gb|EDZ83276.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740831|gb|EDZ88513.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159189|gb|ACI36622.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209762790|gb|ACI79707.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209762792|gb|ACI79708.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209762796|gb|ACI79710.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209913314|dbj|BAG78388.1| ATP-dependent RNA helicase [Escherichia coli SE11]
 gi|215265992|emb|CAS10401.1| ATP-dependent RNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|217319960|gb|EEC28385.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352936|emb|CAU98735.1| ATP-dependent RNA helicase [Escherichia coli 55989]
 gi|218355437|emb|CAQ88046.1| ATP-dependent RNA helicase [Escherichia fergusonii ATCC 35469]
 gi|218361926|emb|CAQ99526.1| ATP-dependent RNA helicase [Escherichia coli IAI1]
 gi|218366266|emb|CAR04013.1| ATP-dependent RNA helicase [Escherichia coli S88]
 gi|218371076|emb|CAR18903.1| ATP-dependent RNA helicase [Escherichia coli IAI39]
 gi|218433176|emb|CAR14074.1| ATP-dependent RNA helicase [Escherichia coli UMN026]
 gi|222034281|emb|CAP77022.1| ATP-dependent RNA helicase srmB [Escherichia coli LF82]
 gi|226901452|gb|EEH87711.1| ATP-dependent RNA helicase SrmB [Escherichia sp. 3_2_53FAA]
 gi|227835962|gb|EEJ46428.1| ATP-dependent RNA helicase [Escherichia coli 83972]
 gi|242378176|emb|CAQ32951.1| SrmB, DEAD-box RNA helicase [Escherichia coli BL21(DE3)]
 gi|253323568|gb|ACT28170.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974452|gb|ACT40123.1| ATP-dependent RNA helicase [Escherichia coli B str. REL606]
 gi|253978619|gb|ACT44289.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
 gi|254593927|gb|ACT73288.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|257755319|dbj|BAI26821.1| ATP-dependent RNA helicase SrmB [Escherichia coli O26:H11 str.
           11368]
 gi|257760408|dbj|BAI31905.1| ATP-dependent RNA helicase SrmB [Escherichia coli O103:H2 str.
           12009]
 gi|257765619|dbj|BAI37114.1| ATP-dependent RNA helicase SrmB [Escherichia coli O111:H- str.
           11128]
 gi|281179625|dbj|BAI55955.1| ATP-dependent RNA helicase [Escherichia coli SE15]
 gi|281601988|gb|ADA74972.1| ATP-dependent RNA helicase [Shigella flexneri 2002017]
 gi|284922526|emb|CBG35613.1| ATP-dependent RNA helicase [Escherichia coli 042]
 gi|290763725|gb|ADD57686.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str.
           CB9615]
 gi|291323761|gb|EFE63189.1| ATP-dependent RNA helicase SrmB [Escherichia coli B088]
 gi|291428226|gb|EFF01253.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1412]
 gi|291433493|gb|EFF06472.1| ATP-dependent RNA helicase SrmB [Escherichia coli B185]
 gi|291471460|gb|EFF13944.1| ATP-dependent RNA helicase SrmB [Escherichia coli B354]
 gi|294490578|gb|ADE89334.1| ATP-dependent RNA helicase SrmB [Escherichia coli IHE3034]
 gi|298279260|gb|EFI20774.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1302]
 gi|299881405|gb|EFI89616.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|300300892|gb|EFJ57277.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|300308942|gb|EFJ63462.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300314531|gb|EFJ64315.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300357971|gb|EFJ73841.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|300396394|gb|EFJ79932.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|300403773|gb|EFJ87311.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300408834|gb|EFJ92372.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|300412315|gb|EFJ95625.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1]
 gi|300449067|gb|EFK12687.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300459099|gb|EFK22592.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|300464255|gb|EFK27748.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300526498|gb|EFK47567.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300841878|gb|EFK69638.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|301073616|gb|EFK88422.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|305851754|gb|EFM52206.1| ATP-dependent RNA helicase SrmB [Escherichia coli NC101]
 gi|307554595|gb|ADN47370.1| ATP-dependent RNA helicase SrmB [Escherichia coli ABU 83972]
 gi|307625875|gb|ADN70179.1| ATP-dependent RNA helicase SrmB [Escherichia coli UM146]
 gi|309702962|emb|CBJ02293.1| ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
 gi|310331773|gb|EFP99008.1| ATP-dependent RNA helicase srmB [Escherichia coli 1827-70]
 gi|312289912|gb|EFR17800.1| ATP-dependent RNA helicase srmB [Escherichia coli 2362-75]
 gi|312947148|gb|ADR27975.1| ATP-dependent RNA helicase SrmB [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313648255|gb|EFS12699.1| ATP-dependent RNA helicase srmB [Shigella flexneri 2a str. 2457T]
 gi|315256604|gb|EFU36572.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1]
 gi|315287992|gb|EFU47394.1| DEAD/DEAH box helicase [Escherichia coli MS 110-3]
 gi|315294533|gb|EFU53881.1| DEAD/DEAH box helicase [Escherichia coli MS 153-1]
 gi|315300543|gb|EFU59772.1| DEAD/DEAH box helicase [Escherichia coli MS 16-3]
 gi|315615838|gb|EFU96470.1| ATP-dependent RNA helicase srmB [Escherichia coli 3431]
 gi|320188917|gb|EFW63576.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC1212]
 gi|320196412|gb|EFW71036.1| ATP-dependent RNA helicase SrmB [Escherichia coli WV_060327]
 gi|320200140|gb|EFW74729.1| ATP-dependent RNA helicase SrmB [Escherichia coli EC4100B]
 gi|320640825|gb|EFX10319.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           G5101]
 gi|320657068|gb|EFX24887.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662733|gb|EFX30072.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667553|gb|EFX34473.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323156234|gb|EFZ42393.1| ATP-dependent RNA helicase srmB [Escherichia coli EPECa14]
 gi|323159233|gb|EFZ45223.1| ATP-dependent RNA helicase srmB [Escherichia coli E128010]
 gi|323167785|gb|EFZ53480.1| ATP-dependent RNA helicase srmB [Shigella sonnei 53G]
 gi|323177294|gb|EFZ62882.1| ATP-dependent RNA helicase srmB [Escherichia coli 1180]
 gi|323184544|gb|EFZ69918.1| ATP-dependent RNA helicase srmB [Escherichia coli 1357]
 gi|323188309|gb|EFZ73601.1| ATP-dependent RNA helicase srmB [Escherichia coli RN587/1]
 gi|323936316|gb|EGB32607.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323941161|gb|EGB37346.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|323944576|gb|EGB40645.1| DEAD/DEAH box helicase [Escherichia coli H120]
 gi|323949230|gb|EGB45121.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323955812|gb|EGB51570.1| DEAD/DEAH box helicase [Escherichia coli H263]
 gi|323961191|gb|EGB56804.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323968024|gb|EGB63436.1| DEAD/DEAH box helicase [Escherichia coli M863]
 gi|323978394|gb|EGB73479.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
 gi|324008433|gb|EGB77652.1| DEAD/DEAH box helicase [Escherichia coli MS 57-2]
 gi|324014379|gb|EGB83598.1| DEAD/DEAH box helicase [Escherichia coli MS 60-1]
 gi|324020034|gb|EGB89253.1| DEAD/DEAH box helicase [Escherichia coli MS 117-3]
 gi|324118214|gb|EGC12110.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|326340382|gb|EGD64186.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           1125]
 gi|326345065|gb|EGD68809.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           1044]
 gi|327252286|gb|EGE63958.1| ATP-dependent RNA helicase srmB [Escherichia coli STEC_7v]
 gi|330912344|gb|EGH40854.1| ATP-dependent RNA helicase SrmB [Escherichia coli AA86]
 gi|331039998|gb|EGI12218.1| ATP-dependent RNA helicase SrmB [Escherichia coli H736]
 gi|331042872|gb|EGI15013.1| ATP-dependent RNA helicase SrmB [Escherichia coli M605]
 gi|331048888|gb|EGI20964.1| ATP-dependent RNA helicase SrmB [Escherichia coli M718]
 gi|331054386|gb|EGI26413.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA206]
 gi|331064521|gb|EGI36432.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA271]
 gi|331069299|gb|EGI40691.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA280]
 gi|331075033|gb|EGI46353.1| ATP-dependent RNA helicase SrmB [Escherichia coli H591]
 gi|331079178|gb|EGI50380.1| ATP-dependent RNA helicase SrmB [Escherichia coli H299]
 gi|332089185|gb|EGI94292.1| ATP-dependent RNA helicase srmB [Shigella dysenteriae 155-74]
 gi|332100618|gb|EGJ03964.1| ATP-dependent RNA helicase SrmB [Shigella sp. D9]
 gi|332344451|gb|AEE57785.1| ATP-dependent RNA helicase SrmB [Escherichia coli UMNK88]
 gi|332753986|gb|EGJ84360.1| ATP-dependent RNA helicase srmB [Shigella flexneri 4343-70]
 gi|332755796|gb|EGJ86154.1| ATP-dependent RNA helicase srmB [Shigella flexneri 2747-71]
 gi|332761970|gb|EGJ92243.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-671]
 gi|332766578|gb|EGJ96783.1| srmB, DEAD-box RNA helicase [Shigella flexneri 2930-71]
 gi|333000838|gb|EGK20410.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-218]
 gi|333001669|gb|EGK21236.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-272]
 gi|333015945|gb|EGK35280.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-227]
 gi|333016831|gb|EGK36157.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-304]
          Length = 444

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 90/253 (35%), Gaps = 17/253 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT  G    +  + ++ + + +          +I     + +D+  +  L  
Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DIP+   V   D  + G      + +  IGR AR       +      
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSG-----DTYLHRIGRTARAGRKGTAISLVEAH 355

Query: 695 KSIQLA-----IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
             + L      I+E  + R       K    + +   +   +V+     +  A       
Sbjct: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415

Query: 750 AQQLSLSKKKGKA 762
            ++     K    
Sbjct: 416 VKKRHRDTKNIGK 428


>gi|281424310|ref|ZP_06255223.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
 gi|281401579|gb|EFB32410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
          Length = 544

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 28/242 (11%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
            TI+ SAT P   E      +   ++I+           +SA    E     I     + 
Sbjct: 185 QTIMFSATMPDKIEDLAKTLLKNPKVIKLAVSKPAEKIKQSAYVCYETQKMGIIKDIFKN 244

Query: 583 ---LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               R+++   +K   + +   L  ++I    MHS++    R +++   + G+FDVLV  
Sbjct: 245 GDLERVIIFCGSKLKVKQVAGALQRKHINCGEMHSDLDQATRDDVMFKFKSGQFDVLVAT 304

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +++  G+DI +  +V   D             +  IGR AR       +   +       
Sbjct: 305 DIVARGIDIDDIAMVINYDV-----PHDAEDYVHRIGRTARAAREGSAITFVSEDDIYYF 359

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
                     +Q+E         + +++++ +   P+ L D      +   ++ S +K +
Sbjct: 360 ----------QQIE---------KFLEKEVEKTPLPVGLGDGPEYKSAGKPKRGSSAKSR 400

Query: 760 GK 761
            +
Sbjct: 401 RR 402


>gi|198452173|ref|XP_001358660.2| GA20653 [Drosophila pseudoobscura pseudoobscura]
 gi|198131816|gb|EAL27801.2| GA20653 [Drosophila pseudoobscura pseudoobscura]
          Length = 743

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 68/180 (37%), Gaps = 13/180 (7%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            TI+ SAT  PG   L Q       Q+      +  T  V   +E+    ++   +    
Sbjct: 489 QTIMTSATWPPGVRRLAQSYMNNPIQVCVGSLDLAATHSVKQVIELLEDESEKYGIIKSF 548

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                +  +I++    K  A+DL+  L       + +H      +R + I D++ G   +
Sbjct: 549 IKNMTKTDKIIVFCGRKARADDLSSDLTLDGFMTQCIHGSRDQSDREQAIADIKSGVVRI 608

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   GLDI +   V   D     F R+    +  +GR  R   +   +   T + 
Sbjct: 609 LIATDVASRGLDIEDISHVINYD-----FPRNIEEYVHRVGRTGRAGRTGTSISFITRSD 663


>gi|157871774|ref|XP_001684436.1| DEAD box RNA helicase [Leishmania major strain Friedlin]
 gi|68127505|emb|CAJ05468.1| putative ATP dependent DEAD-box helicase [Leishmania major strain
           Friedlin]
          Length = 389

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 67/180 (37%), Gaps = 15/180 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
             I+VSAT  +  LE  +  + E          I    +    V +   + + + + +  
Sbjct: 191 QIILVSATLPADVLEMTEKFMTEPTSILVKRDEITVDSVKQYFVSVDEEKNKFDVLMELY 250

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +         ++   T++  E L + +      V  MH ++   ER EI+R  R G   V
Sbjct: 251 DSLTIAH--AVVFCNTRKKVEQLAKKMTREKFAVSAMHGDMPQAERDEIMRQFRNGHSRV 308

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  +L   G+D+    LV   D        ++   I  IGR  R   + + +      +
Sbjct: 309 LITTDLWARGIDVERVSLVLSYD-----LPLAREQYIHRIGRTGRMGRTGLAITFVRHDE 363


>gi|222624792|gb|EEE58924.1| hypothetical protein OsJ_10575 [Oryza sativa Japonica Group]
          Length = 696

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 76/188 (40%), Gaps = 16/188 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT--------GLVDPPVEIRSART-QVEDVYDE 574
            T++ SAT   +++E+    I+   IR T          +   V +  +   ++  + ++
Sbjct: 325 QTLLFSAT-MPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEK 383

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +      G  +L+    K   +++   L +R  R+  +H +     R+E ++  + G + 
Sbjct: 384 LPGMIDDGD-VLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYH 442

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   GLDI     V   D  KE  +      I  IGR  R  +     Y     
Sbjct: 443 VLVATDVAARGLDIKSIKTVVNFDIAKEMDMH-----IHRIGRTGRAGDKDGTAYTLITQ 497

Query: 695 KSIQLAID 702
           K ++ A +
Sbjct: 498 KEVRFAGE 505


>gi|218690692|ref|YP_002398904.1| ATP-dependent RNA helicase SrmB [Escherichia coli ED1a]
 gi|218428256|emb|CAR09175.2| ATP-dependent RNA helicase [Escherichia coli ED1a]
          Length = 444

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 90/253 (35%), Gaps = 17/253 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT  G    +  + ++ + + +          +I     + +D+  +  L  
Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DIP+   V   D  + G      + +  IGR AR       +      
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSG-----DTYLHRIGRTARAGRKGTAISLVEAH 355

Query: 695 KSIQLA-----IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
             + L      I+E  + R       K    + +   +   +V+     +  A       
Sbjct: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415

Query: 750 AQQLSLSKKKGKA 762
            ++     K    
Sbjct: 416 VKKRHRDTKNIGK 428


>gi|218199270|gb|EEC81697.1| hypothetical protein OsI_25294 [Oryza sativa Indica Group]
          Length = 639

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 20/194 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT    E+++     +   I          T L+   VE      +   + D +
Sbjct: 359 QTMLFSAT-FPKEIQRMASDFLADYIFLAVGRVGSSTDLIVQRVEFVLDADKRSYLMDLL 417

Query: 576 NLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +     G        L+ V TKR A+ L  +LY        +H +    ER   +R  + 
Sbjct: 418 HAQRANGTHGKQALTLVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREYALRSFKS 477

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G   +LV  ++   GLDIP    V   D             +  IGR  R   S     +
Sbjct: 478 GATPILVATDVAARGLDIPHVAHVINFD-----LPNDIDDYVHRIGRTGRAGKSGLATAF 532

Query: 690 ADTITKSIQLAIDE 703
            +     +   + E
Sbjct: 533 FNESNTPLARPLSE 546


>gi|15803103|ref|NP_289134.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 EDL933]
 gi|12516997|gb|AAG57692.1|AE005488_3 ATP-dependent RNA helicase [Escherichia coli O157:H7 str. EDL933]
          Length = 444

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 90/253 (35%), Gaps = 17/253 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT  G    +  + ++ + + +          +I     + +D+  +  L  
Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DIP+   V   D  + G      + +  IGR AR       +      
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSG-----DTYLHRIGRTARAGRKGTAISLVEAH 355

Query: 695 KSIQLA-----IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
             + L      I+E  + R       K    + +   +   +V+     +  A       
Sbjct: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415

Query: 750 AQQLSLSKKKGKA 762
            ++     K    
Sbjct: 416 VKKRHRDTKNIGK 428


>gi|127511273|ref|YP_001092470.1| ATP-dependent RNA helicase RhlB [Shewanella loihica PV-4]
 gi|189040043|sp|A3Q9R3|RHLB_SHELP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|126636568|gb|ABO22211.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 435

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 81/255 (31%), Gaps = 35/255 (13%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLR 522
            +D     +  +S +          + + GF         R+P   +   + F     ++
Sbjct: 145 IIDYVRQGVINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDANERLNMLFSATLSMK 204

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
              +         ++E          I P+      +        +ED    +    ++ 
Sbjct: 205 VQELAYDHMNDPEKVE----------IAPSEKTSKNITEEIFYPSMEDKMRLLLTLIEED 254

Query: 583 --LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
              + ++   TK   E+L  +L     RV  +  +V   +RI I+     G+ D+LV  +
Sbjct: 255 WPEKAIVFSNTKHSCENLWAHLEGDGHRVGLLTGDVPQKKRIRILEQFTKGELDILVATD 314

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT------- 692
           +   GL I +   V   D             +  IGR  R     V + +A         
Sbjct: 315 VAARGLHISDVSHVYNYD-----LPDDCEDYVHRIGRTGRAGQKGVSVSFACEEYALNLP 369

Query: 693 -ITKSIQLAIDETTR 706
            I   IQ +I  T  
Sbjct: 370 AIEHYIQHSIPVTNY 384


>gi|193068305|ref|ZP_03049268.1| ATP-dependent RNA helicase SrmB [Escherichia coli E110019]
 gi|192958257|gb|EDV88697.1| ATP-dependent RNA helicase SrmB [Escherichia coli E110019]
          Length = 444

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 90/253 (35%), Gaps = 17/253 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT  G    +  + ++ + + +          +I     + +D+  +  L  
Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNSYLEGEMVQGKRNEAIKRLTEGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DIP+   V   D  + G      + +  IGR AR       +      
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSG-----DTYLHRIGRTARAGRKGTAISLVEAH 355

Query: 695 KSIQLA-----IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
             + L      I+E  + R       K    + +   +   +V+     +  A       
Sbjct: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415

Query: 750 AQQLSLSKKKGKA 762
            ++     K    
Sbjct: 416 VKKRHRDTKNIGK 428


>gi|332029665|gb|EGI69554.1| Putative ATP-dependent RNA helicase DDX17 [Acromyrmex echinatior]
          Length = 595

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 67/187 (35%), Gaps = 21/187 (11%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           L+      + QII      +          ++  +  EI   A+   + ++ + TKR  +
Sbjct: 340 LQLSANHNILQIIDVCQDYEKE-------NKLSTLLKEIM--AESENKTIVFIETKRRVD 390

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           ++T  +         +H +    ER  +++D R GK  +LV  ++   GLD+ +   V  
Sbjct: 391 EITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRSGKAPILVATDVAARGLDVEDVKFVIN 450

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
            D     +       +  IGR  R   +       T   +   A D        Q+    
Sbjct: 451 FD-----YPSCSEDYVHRIGRTGRRQKTGTAYTFFTPNNA-NKAND------LIQVLKEA 498

Query: 717 KHNINPQ 723
              INP+
Sbjct: 499 NQVINPK 505


>gi|296193469|ref|XP_002744529.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Callithrix
           jacchus]
          Length = 622

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 348 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 401

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 402 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 460

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 461 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 515

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 516 YVHRIGRTGRSGNTGIATTF------INKACDES 543


>gi|296272832|ref|YP_003655463.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097006|gb|ADG92956.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 452

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 7/172 (4%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS--ARTQVEDVYDE 574
            +   +  T++ SAT      E  +GI+V+ I +    V     IR    +T  +D    
Sbjct: 171 SFIPKQRQTLLFSATYDENIKELSKGILVDPIFKSVDTVHTESTIREEFIKTSRKDSVLL 230

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              +  +   +++   TK   ++L  YLY+       +HS+ +   R EII       + 
Sbjct: 231 KLFSTYKPSSVIIFCNTKIKCDELDTYLYDMGYDPLVLHSDFEQKTRDEIITLFSNKSYP 290

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+  ++   GLDI +  +V   D                IGR AR   S V
Sbjct: 291 ILIATDVASRGLDIDDVEMVINYD-----MANDTNVYTHRIGRTARAGKSGV 337


>gi|289550302|ref|YP_003471206.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
 gi|315660238|ref|ZP_07913093.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           lugdunensis M23590]
 gi|289179834|gb|ADC87079.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
 gi|315494665|gb|EFU83005.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           lugdunensis M23590]
          Length = 504

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 79/198 (39%), Gaps = 25/198 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDVYDEINLA---- 578
            T++ SAT     + +    +V+Q ++   +V     E+  +  Q+++ Y  +       
Sbjct: 177 QTMLFSAT-----MPKAIQALVQQFMKTPQIVKTMNNEM--SDPQIDEYYTIVKELEKFD 229

Query: 579 -------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                    Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  
Sbjct: 230 TFTNFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKND 289

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
           + D+LV  ++   GLDI     V   D       +   S    IGR  R     + + + 
Sbjct: 290 QIDILVATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFV 344

Query: 691 DTITKSIQLAIDETTRRR 708
           + I       I+E   RR
Sbjct: 345 NPIEMDYIRQIEEVNSRR 362


>gi|258511452|ref|YP_003184886.1| DEAD/DEAH box helicase domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478178|gb|ACV58497.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 541

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 15/136 (11%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   TKR  +DL E L  R      +H ++   +R  ++R  R  + ++LV  ++   G
Sbjct: 258 IIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVATDVAARG 317

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LD+ +   V   D       +   S +  IGR  R     + +   T             
Sbjct: 318 LDVDDVTHVINYDV-----PQDPESYVHRIGRTGRAGKRGLAITLVTPR----------E 362

Query: 706 RRREKQLEHNKKHNIN 721
            +  KQ+E   K  I 
Sbjct: 363 YKLLKQIEREIKQKIT 378


>gi|224370329|ref|YP_002604493.1| predicted ATP-dependent RNA helicase [Desulfobacterium
           autotrophicum HRM2]
 gi|223693046|gb|ACN16329.1| predicted ATP-dependent RNA helicase [Desulfobacterium
           autotrophicum HRM2]
          Length = 411

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 73/212 (34%), Gaps = 23/212 (10%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR----TQVEDVYDEIN 576
            R  T+  SAT      +     +    IR     D PV    +      +++D    + 
Sbjct: 178 KRHQTLFFSATINQKIKKLAFSQVKTTAIRIQISPDDPVSKNVSHFVMFVEMDDKRFFLE 237

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              ++    +I++ V T+  AE + + +    I    +H E     R  +++  +  +  
Sbjct: 238 NFIKENPSAKIIVFVRTRVRAERVAKAMERVGIETSTIHGEKDQTLRSLVMQRFKNNEIS 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+  ++   G+DIP    V   D           + +  +GR  R V     +   +  
Sbjct: 298 ILIATDVSARGIDIPNVDFVINYD-----LPDQAENYVHRVGRTGRGVKKGSAISYCS-- 350

Query: 695 KSIQLAIDETTRRR--EKQLEHNKKHNINPQS 724
                      R R  E Q   NKK  +   +
Sbjct: 351 --------RNERERLDEIQTFINKKVEVVHVT 374


>gi|145594638|ref|YP_001158935.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           tropica CNB-440]
 gi|145303975|gb|ABP54557.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
          Length = 579

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 13/161 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +     ++   ++   + LTE +  R  R   +H  +   +R  ++  LR G  D+LV 
Sbjct: 261 VESPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVA 320

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   GLD+ +   V   D        +  S +  IGR  R     V I  A+     +
Sbjct: 321 TDVAARGLDVEQLSHVVNYDV-----PSAPESYVHRIGRVGRAGREGVAITLAEPRAHRM 375

Query: 698 QLAIDETTRRR-------EKQLEHNKKHNINPQSVKEKIME 731
              I+  T +R             N++  +   +++E ++E
Sbjct: 376 LKTIERVTGQRITIDKIPTVADLRNRRLELTQAALRESLLE 416


>gi|74207549|dbj|BAE40025.1| unnamed protein product [Mus musculus]
          Length = 622

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 84/214 (39%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
           ++ + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 348 SMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 401

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 402 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAKKKADVDAIHEYLLLKGVEAV 460

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 461 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 515

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 516 YVHRIGRTGRSGNTGIATTF------INKACDES 543


>gi|115471073|ref|NP_001059135.1| Os07g0202100 [Oryza sativa Japonica Group]
 gi|75325411|sp|Q6Z4K6|RH52B_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52B; AltName:
           Full=OsPL10b
 gi|34393986|dbj|BAC83834.1| putative DEAD-box RNA helicase DEAD3 [Oryza sativa Japonica Group]
 gi|113610671|dbj|BAF21049.1| Os07g0202100 [Oryza sativa Japonica Group]
 gi|222636630|gb|EEE66762.1| hypothetical protein OsJ_23477 [Oryza sativa Japonica Group]
          Length = 638

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 20/194 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT    E+++     +   I          T L+   VE      +   + D +
Sbjct: 358 QTMLFSAT-FPKEIQRMASDFLADYIFLAVGRVGSSTDLIVQRVEFVLDADKRSYLMDLL 416

Query: 576 NLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +     G        L+ V TKR A+ L  +LY        +H +    ER   +R  + 
Sbjct: 417 HAQRANGTHGKQALTLVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREYALRSFKS 476

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G   +LV  ++   GLDIP    V   D             +  IGR  R   S     +
Sbjct: 477 GATPILVATDVAARGLDIPHVAHVINFD-----LPNDIDDYVHRIGRTGRAGKSGLATAF 531

Query: 690 ADTITKSIQLAIDE 703
            +     +   + E
Sbjct: 532 FNESNTPLARPLSE 545


>gi|239930343|ref|ZP_04687296.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 612

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 23/226 (10%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +D        A +  R ++ V T+  A+ + E L +   +   +H  +    R   + D 
Sbjct: 254 KDKAPVTAAIASRKGRTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADF 313

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G  +VLV  ++   G+ +    LV  +D             +   GR AR   +  ++
Sbjct: 314 KDGYVNVLVATDVAARGIHVDGIDLVLNVDP-----AGDHKDYLHRAGRTARAGRTGTVV 368

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE-DAATTNIS 747
                 +           RR+      +   ++      +     DP L E   A +   
Sbjct: 369 SLALPHQ-----------RRQIFRLM-EDAGVDAMRHIIQGGAAFDPELAEITGARSMTE 416

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           + A+    + ++ +  +  L K++  A        AA +RDE  RL
Sbjct: 417 VQAESAGNAAQQAEREVAQLTKELERAQR-----RAAELRDEADRL 457


>gi|217073428|gb|ACJ85073.1| unknown [Medicago truncatula]
          Length = 369

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 17/192 (8%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 184 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 243

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 244 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDII 301

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 302 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 356

Query: 685 KVILYADTITKS 696
            V +   T+  +
Sbjct: 357 GVAINFVTLEDA 368


>gi|73965239|ref|XP_861886.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 14 [Canis
           familiaris]
          Length = 588

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 279 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 328

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 329 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 388

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 389 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 423


>gi|197099326|ref|NP_001126958.1| probable ATP-dependent RNA helicase DDX5 [Pongo abelii]
 gi|75061603|sp|Q5R4I9|DDX5_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|55733290|emb|CAH93327.1| hypothetical protein [Pongo abelii]
          Length = 614

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 354

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 414

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 415 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 449


>gi|325568403|ref|ZP_08144770.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
           12755]
 gi|325158172|gb|EGC70325.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
           12755]
          Length = 508

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 75/194 (38%), Gaps = 13/194 (6%)

Query: 522 RPTTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEI 575
              T++ SAT  P    +        E + I+   +    ++   +RS   +  DV   +
Sbjct: 174 VRQTLLFSATMPPAIKNIGVKFMKEPEHVQIKAKEMTADLIDQYYVRSKDYEKFDVMTRL 233

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               Q     ++   TKR  ++L   L  R  +   +H ++   +R+ ++R  + G+ D+
Sbjct: 234 LD-VQSPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDI 292

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R       + +     
Sbjct: 293 LVATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNE 347

Query: 695 KSIQLAIDETTRRR 708
            S    I+  T++R
Sbjct: 348 MSYLHVIENLTKKR 361


>gi|331664144|ref|ZP_08365054.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA143]
 gi|331059943|gb|EGI31920.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA143]
          Length = 444

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 90/253 (35%), Gaps = 17/253 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT  G    +  + ++ + + +          +I     + +D+  +  L  
Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DIP+   V   D  + G      + +  IGR AR       +      
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSG-----DTYLHRIGRTARAGRKGTAISLVEAH 355

Query: 695 KSIQLA-----IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
             + L      I+E  + R       K    + +   +   +V+     +  A       
Sbjct: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415

Query: 750 AQQLSLSKKKGKA 762
            ++     K    
Sbjct: 416 VKKRHRDTKNIGK 428


>gi|242041163|ref|XP_002467976.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor]
 gi|241921830|gb|EER94974.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor]
          Length = 766

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 76/188 (40%), Gaps = 16/188 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT--------GLVDPPVEIRSART-QVEDVYDE 574
            T++ SAT   +++E+    I+   IR T          +   V +  +   ++  + ++
Sbjct: 399 QTLLFSAT-MPYKVERLAREILTDPIRVTVGQVGGANEDIKQVVNVLPSDVEKMPWLLEK 457

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +      G  +L+    K   +++ + L +R  R+  +H +     R+E ++  + G + 
Sbjct: 458 LPGMIDDGD-VLVFASKKARVDEIEKELNQRGFRIAALHGDKDQASRMETLQKFKSGTYH 516

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   GLDI     V   D  KE  +      I  IGR  R  +     Y     
Sbjct: 517 VLVATDVAARGLDIKSIKTVVNFDIAKEMDMH-----IHRIGRTGRAGDKDGTAYTLITQ 571

Query: 695 KSIQLAID 702
           K  + A +
Sbjct: 572 KEARFAGE 579


>gi|239624536|ref|ZP_04667567.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239520922|gb|EEQ60788.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47FAA]
          Length = 518

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 31/198 (15%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            +  T++ SAT    E++     ++   ++        VE+    + V D+ +       
Sbjct: 179 KKRQTLLFSAT-MPDEIQALAAKLLHNPVK--------VEVTPVSSTV-DLIETSLYYVD 228

Query: 581 QGLR---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +  +                L+   TK  A+   +YL +  I    +H +     R   +
Sbjct: 229 KANKWPLLVHLLEHEDVSSTLVFTRTKHGADRGAKYLNKSGITAAAIHGDKSQGARQTAL 288

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NS 684
            + + G+  VLV  ++   G+DI E   V   D           + +  IGR  R     
Sbjct: 289 SNFKSGRLRVLVATDIAARGIDIEELSCVINFD-----LPNVPETYVHRIGRTGRAGLGG 343

Query: 685 KVILYADTITKSIQLAID 702
           + I ++D   K+    I+
Sbjct: 344 RAISFSDIEEKAYVKDIE 361


>gi|221053806|ref|XP_002258277.1| eukaryotic initiation factor [Plasmodium knowlesi strain H]
 gi|193808110|emb|CAQ38814.1| eukaryotic initiation factor, putative [Plasmodium knowlesi strain
           H]
          Length = 390

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 22/199 (11%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE---IRSARTQVE- 569
            +       ++ SAT     LE     +   V+ +++   L    ++   +   + Q + 
Sbjct: 185 RFLSPNTQIVLSSATLPQEVLEITNKFMHRPVKILVKRDELTLEGIKQFFVSIEKEQWKY 244

Query: 570 ----DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
               D+Y+ + +      + ++   TK   + LT+ + E N  V  MH+ +   ER +I+
Sbjct: 245 ETLADLYESLTIT-----QAVVFCNTKMKVDWLTKKMQEANFTVCKMHAGMSQSERDDIM 299

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R  KF VL+  ++   GLD+ E  LV   D        S+ S I  IGR+ R     
Sbjct: 300 LKFRQCKFRVLISTDIWGRGLDVQEVSLVVNYD-----LPNSRESYIHRIGRSGRFGRKG 354

Query: 686 V-ILYADTITKSIQLAIDE 703
           V I +       I   I++
Sbjct: 355 VAINFVKNDDIKILRDIEQ 373


>gi|49474271|ref|YP_032313.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse]
 gi|49239775|emb|CAF26165.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse]
          Length = 467

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 15/192 (7%)

Query: 524 TTIVVSATPGSWELEQCQGI----IVEQIIRPTGLVDPPVE--IRSARTQVED---VYDE 574
            T+  SAT      +  +      +  ++ + +       +  ++S     +    + + 
Sbjct: 184 QTLFFSATMAPEITKLTKQFLHFPVTVEVTKASSTATTITQQLVKSGNKSWDKRAVLREL 243

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I+    +    ++    KR   +L   L   N  V  +H ++    R+  + D +  K  
Sbjct: 244 IHNEGDELKNAIIFCNRKRDISELFRSLVRHNFSVGALHGDMDQYSRMSTLADFKDNKLT 303

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTI 693
           +LV  ++   GLDIP    V   D             I  IGR  R N + K        
Sbjct: 304 LLVASDVAARGLDIPAVSHVFNYDV-----PTHAEDYIHRIGRTGRANRSGKAFTIVTKA 358

Query: 694 TKSIQLAIDETT 705
            +    AI+E +
Sbjct: 359 DQKYISAIEEMS 370


>gi|332641920|gb|AEE75441.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 407

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 198 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKE 257

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 258 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 315

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 316 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 370

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 371 GVAINFVTRDDERMLFDI 388


>gi|332025289|gb|EGI65460.1| Putative ATP-dependent RNA helicase DDX17 [Acromyrmex echinatior]
          Length = 706

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 92/255 (36%), Gaps = 39/255 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ + +          + + + +   +  R     + GF         P   +
Sbjct: 237 TPGRLIDFLEKGTT--------NLRRCTYLVLDEADRM---LDMGFE--------PQIRK 277

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV--------DPPVEI---RS 563
               +RP    ++ SAT         +  + + I    G +           VEI     
Sbjct: 278 IIEQIRPDRQVLMWSATWPKEVQALAEDFLSDYIQINIGSLTLAANHNIRQIVEICQEHE 337

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              ++  +  EI    ++G ++++ V TK+  +D+T+ +         +H +    ER  
Sbjct: 338 KEMKLSQLLREIG--TERGSKMIIFVETKKKVDDITKTIKREGWSAISIHGDKSQPERDY 395

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++ + R GK  +LV  ++   GLD+ +   V   D     +  S    I  IGR  R  +
Sbjct: 396 VLSEFRNGKTMILVATDVAARGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGRCQS 450

Query: 684 SKVILYADTITKSIQ 698
           +       T   + Q
Sbjct: 451 AGTAYAYFTPNNARQ 465


>gi|323143379|ref|ZP_08078066.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066]
 gi|322416845|gb|EFY07492.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066]
          Length = 683

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK  AED+   L  R +    +H ++   +R +II  L+ G  D+++  ++   
Sbjct: 295 VLVFVRTKTDAEDVANKLMARGMACAALHGDIPQRQREKIIERLKNGSLDIIIATDVAAR 354

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R       IL+     +     I+ 
Sbjct: 355 GLDVDRITHVFNYD-----IPYDAESYVHRIGRTGRAGRQGEAILFVSPRERRALRQIER 409

Query: 704 TTRRR 708
            TR+R
Sbjct: 410 VTRQR 414


>gi|297520171|ref|ZP_06938557.1| ATP-dependent RNA helicase SrmB [Escherichia coli OP50]
          Length = 416

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 90/253 (35%), Gaps = 17/253 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT  G    +  + ++ + + +          +I     + +D+  +  L  
Sbjct: 153 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 212

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +
Sbjct: 213 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 272

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DIP+   V   D  + G      + +  IGR AR       +      
Sbjct: 273 VLVATDVAARGIDIPDVSHVFNFDMPRSG-----DTYLHRIGRTARAGRKGTAISLVEAH 327

Query: 695 KSIQLA-----IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
             + L      I+E  + R       K    + +   +   +V+     +  A       
Sbjct: 328 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 387

Query: 750 AQQLSLSKKKGKA 762
            ++     K    
Sbjct: 388 VKKRHRDTKNIGK 400


>gi|115375824|ref|ZP_01463075.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
 gi|310820250|ref|YP_003952608.1| ATP-dependent RNA helicase rhle [Stigmatella aurantiaca DW4/3-1]
 gi|115367134|gb|EAU66118.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
 gi|309393322|gb|ADO70781.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
          Length = 496

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 63/192 (32%), Gaps = 11/192 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +  T+  SAT         QGI+   +   + P       VE +    + E     +   
Sbjct: 181 KRQTLFFSATMPPEIQSLAQGILKSPVRVEVTPESTTAETVEQKMFFVEREQKRHLLVHL 240

Query: 579 AQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  R L+   TK  A  + ++L    I    +H       R   +   + G   VL
Sbjct: 241 LGDASIRRALVFTRTKHGANRVAKHLASSRISAEAIHGNKSQNARERALGAFKDGSCRVL 300

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   G+DI     V   D           S +  IGR  R       + + D   +
Sbjct: 301 VATDIAARGIDIEGITHVINFD-----LPNIPESYVHRIGRTGRAGAVGTALSFCDGEER 355

Query: 696 SIQLAIDETTRR 707
           +    I+ T RR
Sbjct: 356 AYLRDIERTIRR 367


>gi|127512383|ref|YP_001093580.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126637678|gb|ABO23321.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 441

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 97/277 (35%), Gaps = 56/277 (20%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL---AEYGFRLPSCMDNRPL 513
            P  L + +  +++         + Q+  +   +  R   L    E G  L    D    
Sbjct: 155 TPGRLLDLLGSNAV--------KLSQLKALVLDEADRMLNLGFTEELGEILKQLPD---- 202

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT-GLVDPPVEIRSARTQVEDVY 572
                   +  T++ SAT              E+++  T  L+  PVEI+    Q  D+ 
Sbjct: 203 --------QKQTLLFSAT------------FPEEVLSLTAKLLTDPVEIQMQEAQSADIE 242

Query: 573 DEINLAAQQG--------------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
             +    +                 ++L+    KR  + L + L +R I  +  H +   
Sbjct: 243 QRVYTVNRSNKTALLAELIKVRQWRQVLVFASAKRSCDHLAQKLEKRGISAQVFHGDKAQ 302

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
             R  ++   + G+  VL+  ++   G+DI +  +V   +       RS    +  IGR+
Sbjct: 303 GARSRVLDGFKNGEITVLIATDIAARGIDIDKLPVVINFE-----LPRSPADYLHRIGRS 357

Query: 679 ARNVNSKVILYADTITKSIQ-LAIDETTRRREKQLEH 714
            R   +   +   +  +      I++  + R  + ++
Sbjct: 358 GRAGETGEAISLISHDEYHHFKVIEKKNKLRLPREQY 394


>gi|94311500|ref|YP_584710.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans
           CH34]
 gi|93355352|gb|ABF09441.1| ATP-dependent RNA helicase [Cupriavidus metallidurans CH34]
          Length = 634

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR A+ L E L +       +H ++    R   +  LR G   VLV  ++  
Sbjct: 312 QAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNLRVLVATDVAA 371

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAID 702
            G+D+P+   V   D  K+         +  IGR  R   S V +         Q   I+
Sbjct: 372 RGIDVPDITHVVNFDLPKQ-----AEDYVHRIGRTGRAGRSGVAINLVNHGDMFQWRRIE 426

Query: 703 E-TTRR 707
             T  R
Sbjct: 427 RFTNNR 432


>gi|330508037|ref|YP_004384465.1| ATP-dependent RNA helicase [Methanosaeta concilii GP-6]
 gi|328928845|gb|AEB68647.1| ATP-dependent RNA helicase, putative [Methanosaeta concilii GP-6]
          Length = 427

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 79/202 (39%), Gaps = 10/202 (4%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           + +++  SAT      E  Q ++ + +     P+      ++  +       ++      
Sbjct: 179 KHSSLFFSATLTRETGELAQSLLNDPVHVQASPSACTLDSIDQQVFFVDQNSKNSLLLDL 238

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  +   R+L+   TK  A+ + + L +  I+   +H      +R + +   R G+  VL
Sbjct: 239 LLKEDMKRVLVFARTKHRADKVAQMLSKNRIQSDAIHGNKSQNQRTKTMERFRSGRIRVL 298

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DI +   V   D   E    S    I   GRA  + N+     A+   +S
Sbjct: 299 VATDIAARGIDIDDITHVVNYDLPNE--PESYVHRIGRTGRAGASGNAFSFCSAE--ERS 354

Query: 697 IQLAIDETTRRREKQLEHNKKH 718
               I+  TR  + +   +K H
Sbjct: 355 FLKDIERLTRE-KIEEREHKYH 375


>gi|225456912|ref|XP_002277894.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 611

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 67/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSAT-PGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E           + II  Q ++    +   VE+ +   +   +   +
Sbjct: 369 QTLYWSATWPREVETLARQFLRNPYKVIIGSQDLKANQSIQQVVEVVTETEKYNRLIRLL 428

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G RIL+ + TK+  + +T  +         +H +    ER  ++ + + G+  +
Sbjct: 429 KEVMD-GSRILIFMETKKGCDQVTRQMRMDGWPSLSIHGDKNQAERDWVLAEFKSGRSPI 487

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  S    +  IGR  R       +   T + 
Sbjct: 488 MTATDVAARGLDVKDIKCVINYD-----FPSSLEDYVHRIGRTGRAGAKGTAITFFTHSN 542

Query: 696 S 696
           +
Sbjct: 543 A 543


>gi|223590235|sp|A5DL80|DBP2_PICGU RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 554

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 18/167 (10%)

Query: 531 TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL-RILLTV 589
           T GS EL     I               VE+ S   + + +   +  A      ++L+  
Sbjct: 332 TIGSLELAASHTITQ------------IVEVLSEFEKRDRLVKHLETATADKEAKVLIFS 379

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            TKR  +++T YL         +H + +  ER  ++R+ + GK  ++V  ++   G+D+ 
Sbjct: 380 STKRACDEITSYLRADGWPALAIHGDKQQNERDWVLREFKTGKSPIMVATDVAARGIDVK 439

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
               V   D        +    +  IGR  R   +   +   T   S
Sbjct: 440 GISYVINYD-----MPGNIEDYVHRIGRTGRAGTTGTAVSLFTEANS 481


>gi|129277522|ref|NP_001076071.1| probable ATP-dependent RNA helicase DDX41 [Bos taurus]
 gi|126717403|gb|AAI33466.1| DDX41 protein [Bos taurus]
 gi|296485512|gb|DAA27627.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Bos taurus]
          Length = 622

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 348 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 401

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 402 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 460

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 461 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 515

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 516 YVHRIGRTGRSGNTGIATTF------INKACDES 543


>gi|72392369|ref|XP_846985.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|62359340|gb|AAX79779.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
 gi|70803015|gb|AAZ12919.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
 gi|261330174|emb|CBH13158.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 569

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 70/197 (35%), Gaps = 13/197 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ-- 581
            T++ SAT    E+           IR     +  +        V  V D       +  
Sbjct: 255 QTLMFSAT-WPQEIRNLAASFQRDFIRVHVGSEDLIANADVTQHVSVVEDYDKQRRLEEI 313

Query: 582 -----GLRILLTVLTKRMAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  R+L+ V TKR A+ L   L       V  +H + +  +R  ++   R  +  V
Sbjct: 314 LQKVGKQRVLIFVKTKRTADSLHHSLQRLIGGSVMAIHGDKEQSQRDYVLDRFRRDERSV 373

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI    +V   D      +      I   GRA +  ++   +     +K
Sbjct: 374 LVATDVAARGLDIKNLDVVINFDMPTN--IEDYVHRIGRTGRAGQRGDAYTFVSGADPSK 431

Query: 696 SIQLAIDETTRRREKQL 712
           +++  ID    RR  Q 
Sbjct: 432 TVRDLIDIL--RRANQE 446


>gi|307215190|gb|EFN89962.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
          Length = 540

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 14/159 (8%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++  +  EI   A+   + ++ + TKR  +++T  +         +H +    ER  +
Sbjct: 314 ENKLSTLLKEIM--AESENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWV 371

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           ++D R GK  +LV  ++   GLD+ +   V   D     +       +  IGR  R   +
Sbjct: 372 LQDFRSGKAPILVATDVAARGLDVEDVKFVINFD-----YPSCSEDYVHRIGRTGRRQKT 426

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
                  T   S   A D        Q+       INP+
Sbjct: 427 GTAYTFFTPNNS-NKAND------LIQVLKEANQVINPK 458


>gi|301785524|ref|XP_002928176.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like
           [Ailuropoda melanoleuca]
          Length = 622

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 348 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 401

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 402 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 460

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 461 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 515

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 516 YVHRIGRTGRSGNTGIATTF------INKACDES 543


>gi|295680824|ref|YP_003609398.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
 gi|295440719|gb|ADG19887.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 481

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 81/212 (38%), Gaps = 19/212 (8%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVE-DVYDEINL 577
            T++ SAT           I+   V   + P       ++  +     + + D++  +  
Sbjct: 181 QTLLFSATFTDDIRAMAANILRGPVNISVSPPNATASRIKQWVVPVDKKNKPDLFMHLV- 239

Query: 578 AAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            A+ G +  L+ V T+   + L   L E    V  +H +     R+  +   + G+  +L
Sbjct: 240 -AENGWQHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKAGEVQML 298

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLDI +  LV  +D             +  IGR  R   S V +      ++
Sbjct: 299 VATDVAARGLDIDDLPLVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADEA 353

Query: 697 IQLAIDETTRR----REKQLEHNKKHNINPQS 724
            QLA  E   R    R+++     +H   PQ+
Sbjct: 354 PQLAAIEALIRQTLPRKEEPGFEAEHR-VPQT 384


>gi|301093191|ref|XP_002997444.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans
           T30-4]
 gi|262110700|gb|EEY68752.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans
           T30-4]
          Length = 411

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 23/238 (9%)

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
           R D  +   L E    L     ++      +   +    + SAT     LE     + E 
Sbjct: 177 RTDEVKMFVLDEADEMLSRGFKDQIYEVFRFLPEKVQVALFSATMPLDVLEVTHRFMREP 236

Query: 548 I--------IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
           I        +   G+    + I     + + + D          + ++   T+R  + LT
Sbjct: 237 IRILVKRDELTLEGIKQFFIAIDREEWKFDTLCDLYETLTIT--QAIIYCNTRRKVDWLT 294

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           E +  ++  V  MH +++  ER  I+R+ R G   VL+  +LL  G+D+ +  LV   D 
Sbjct: 295 EKMQSKDFTVSAMHGDMEQRERDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD- 353

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKK 717
                  ++ + I  IGR+ R     V +   T      L        R+ +  +N +
Sbjct: 354 ----LPTNRENYIHRIGRSGRFGRKGVAINFLTHNDVRYL--------RDIEQFYNTQ 399


>gi|152977726|ref|YP_001343355.1| ATP-dependent RNA helicase RhlB [Actinobacillus succinogenes 130Z]
 gi|189040023|sp|A6VKC3|RHLB_ACTSZ RecName: Full=ATP-dependent RNA helicase rhlB
 gi|150839449|gb|ABR73420.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes
           130Z]
          Length = 413

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 61/353 (17%), Positives = 119/353 (33%), Gaps = 54/353 (15%)

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTA-MKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           TG+ +  +     +  +H          A +     EL +++        L +  +L   
Sbjct: 57  TGKTMAFLTATFHHLLTHQPDFITNQPRALILAPTRELAVQIA--HDAESLAQTTKLRIA 114

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
           + Y  +  +     ++IEN    L G         + +Y+ +  ++  ++  V +     
Sbjct: 115 LAYGGDGYD--KQLKTIENGVDILIGTTGR-----VIDYV-KQGIIRFNDIQVVV----- 161

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
               +  R   L   GF      D R L  +        T++ SAT      E     + 
Sbjct: 162 --LDEADRMFDL---GFI----KDIRYLLRKCPAPKSRLTMLFSATLSYKVRELAFEDMN 212

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG--------------LRILLTVLT 591
           +            +EI   +     + +E+   + +                R ++   T
Sbjct: 213 D---------PEYIEIEPLQKTGHRIKEELFYPSNRDKMALLMTLLEEEWPERCIIFANT 263

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           K   E++  YL     RV  +  +V   +R+ +++    G+ D+LV  ++   GL IP+ 
Sbjct: 264 KHRCEEIWGYLAADGQRVGLLTGDVAQKKRLALLKQFTDGELDILVATDVAARGLHIPDV 323

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
             V   D         +   +  IGR  R   S   I +A         AI+E
Sbjct: 324 THVFNYD-----LPDDREDYVHRIGRTGRAGESGMSISFACEQYAMNLPAIEE 371


>gi|324113103|gb|EGC07079.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
 gi|325496344|gb|EGC94203.1| ATP-dependent RNA helicase SrmB [Escherichia fergusonii ECD227]
          Length = 444

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 90/253 (35%), Gaps = 17/253 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT  G    +  + ++ + + +          +I     + +D+  +  L  
Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DIP+   V   D  + G      + +  IGR AR       +      
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSG-----DTYLHRIGRTARAGRKGTAISLVEAH 355

Query: 695 KSIQLA-----IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
             + L      I+E  + R       K    + +   +   +V+     +  A       
Sbjct: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415

Query: 750 AQQLSLSKKKGKA 762
            ++     K    
Sbjct: 416 VKKRHRDTKNIGK 428


>gi|302854279|ref|XP_002958649.1| hypothetical protein VOLCADRAFT_69703 [Volvox carteri f.
           nagariensis]
 gi|300256038|gb|EFJ40315.1| hypothetical protein VOLCADRAFT_69703 [Volvox carteri f.
           nagariensis]
          Length = 582

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 64/178 (35%), Gaps = 19/178 (10%)

Query: 522 RPTTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           R  T++ SAT P   E      L +   + +  +  PT  V   +E      +++ +   
Sbjct: 315 RHQTLLFSATMPKEIEELARAYLNKPVTVKIGAVSTPTANVAQRLEHAPEGQKLDILVAL 374

Query: 575 INLAAQQGLR-------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           I+                ++ V  K   +++   L E  I    +H  +   ER   +RD
Sbjct: 375 ISSEVAAEASGGPPMPLTIVFVERKNRCDEVAAALQEDGIPANALHGGLGQFEREAALRD 434

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              G   VLV  +L   GLD+   G V  +D  K     +    +  IGR  R     
Sbjct: 435 FAKGHIKVLVATDLASRGLDVKGIGHVINMDLPK-----TFEDYVHRIGRTGRAGTKG 487


>gi|221123566|ref|XP_002167654.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Hydra magnipapillata]
          Length = 685

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 99/264 (37%), Gaps = 29/264 (10%)

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQ----------GIIVEQIIRPTGLVDPPVEIR 562
           L+    +  +P T++ SAT   W  +  +           +I E   +    V   V   
Sbjct: 227 LKHSYTSARKPQTLLFSATVPPWLQQNSKKYLSSNLKVFDLIGEDKNKGATTVQHKVIKC 286

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           S   +   + D + L + +  + ++   TK+ A +L+      + +V  +H ++   +R 
Sbjct: 287 SYWERPLLIKDIMQLYSGKFGKTIIFTTTKQEANELSVESSIPDSQV--LHGDISQSQRE 344

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             ++  R GKF+ L+  ++   GLDIPE  LV   +             I   GR  R  
Sbjct: 345 ITLQGFRNGKFNCLIATDVAARGLDIPEVDLVIQTEP-----PNDIDFYIHRAGRTGRAG 399

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
            S V +      +  ++A  E            K+  +  + +     E I     +DA 
Sbjct: 400 RSGVCVVFYKPGQESEIAAVE------------KRTGVTFEKITPPNPEEIVSSCADDAI 447

Query: 743 TTNISIDAQQLSLSKKKGKAHLKS 766
            +   +++  +S   K  +  ++ 
Sbjct: 448 RSLEKVNSDVISFFIKPARELIEK 471


>gi|15610347|ref|NP_217727.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Rv]
 gi|15842798|ref|NP_337835.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|121639098|ref|YP_979322.1| putative ATP-dependent RNA helicase rhlE [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148663072|ref|YP_001284595.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Ra]
 gi|148824410|ref|YP_001289164.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis F11]
 gi|167968329|ref|ZP_02550606.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis H37Ra]
 gi|215405221|ref|ZP_03417402.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           02_1987]
 gi|215413087|ref|ZP_03421788.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           94_M4241A]
 gi|215432173|ref|ZP_03430092.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054]
 gi|215447511|ref|ZP_03434263.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85]
 gi|224991590|ref|YP_002646279.1| putative ATP-dependent RNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253800250|ref|YP_003033251.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           1435]
 gi|254233823|ref|ZP_04927148.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis C]
 gi|254365837|ref|ZP_04981882.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254552311|ref|ZP_05142758.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260188256|ref|ZP_05765730.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A]
 gi|260202366|ref|ZP_05769857.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46]
 gi|260206559|ref|ZP_05774050.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85]
 gi|289444785|ref|ZP_06434529.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46]
 gi|289448897|ref|ZP_06438641.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A]
 gi|289555487|ref|ZP_06444697.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           605]
 gi|289575929|ref|ZP_06456156.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85]
 gi|289747027|ref|ZP_06506405.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           02_1987]
 gi|289755331|ref|ZP_06514709.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054]
 gi|289759347|ref|ZP_06518725.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85]
 gi|294993850|ref|ZP_06799541.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis 210]
 gi|297635860|ref|ZP_06953640.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           4207]
 gi|297732857|ref|ZP_06961975.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           R506]
 gi|298526689|ref|ZP_07014098.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           94_M4241A]
 gi|306777536|ref|ZP_07415873.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu001]
 gi|306786080|ref|ZP_07424402.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu003]
 gi|306790447|ref|ZP_07428769.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu004]
 gi|306794968|ref|ZP_07433270.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu005]
 gi|306799169|ref|ZP_07437471.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu006]
 gi|306805014|ref|ZP_07441682.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu008]
 gi|306809200|ref|ZP_07445868.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu007]
 gi|306973655|ref|ZP_07486316.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu010]
 gi|313660190|ref|ZP_07817070.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           V2475]
 gi|2072674|emb|CAB08305.1| PROBABLE ATP-DEPENDENT RNA HELICASE RHLE [Mycobacterium
           tuberculosis H37Rv]
 gi|13883125|gb|AAK47649.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|121494746|emb|CAL73227.1| Probable ATP-dependent RNA helicase rhlE [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124599352|gb|EAY58456.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis C]
 gi|134151350|gb|EBA43395.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507224|gb|ABQ75033.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Ra]
 gi|148722937|gb|ABR07562.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis F11]
 gi|224774705|dbj|BAH27511.1| putative ATP-dependent RNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253321753|gb|ACT26356.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           1435]
 gi|289417704|gb|EFD14944.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46]
 gi|289421855|gb|EFD19056.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A]
 gi|289440119|gb|EFD22612.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           605]
 gi|289540360|gb|EFD44938.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85]
 gi|289687555|gb|EFD55043.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           02_1987]
 gi|289695918|gb|EFD63347.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054]
 gi|289714911|gb|EFD78923.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85]
 gi|298496483|gb|EFI31777.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214084|gb|EFO73483.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu001]
 gi|308329234|gb|EFP18085.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu003]
 gi|308333066|gb|EFP21917.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu004]
 gi|308336752|gb|EFP25603.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu005]
 gi|308340590|gb|EFP29441.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu006]
 gi|308344527|gb|EFP33378.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu007]
 gi|308348323|gb|EFP37174.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu008]
 gi|308356899|gb|EFP45750.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu010]
 gi|323718078|gb|EGB27260.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           CDC1551A]
 gi|326902560|gb|EGE49493.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis W-148]
 gi|328459985|gb|AEB05408.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           4207]
          Length = 527

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   +  A  +G   ++   TKR A+ + + L ER   V  +H ++  L R + ++  R
Sbjct: 259 ELVSRVLQARDRG-ATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFR 317

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G  DVLV  ++   G+DI +   V             +   +  IGR  R   + V + 
Sbjct: 318 TGGIDVLVATDVAARGIDIDDVTHVINYQC-----PEDEKMYVHRIGRTGRAGRTGVAVT 372

Query: 689 YADTITKSIQLAIDE 703
             D         ID+
Sbjct: 373 LVDWDELPRWSMIDQ 387


>gi|167646708|ref|YP_001684371.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp.
           K31]
 gi|167349138|gb|ABZ71873.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
          Length = 678

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 58/183 (31%), Gaps = 13/183 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYD 573
           +  T+  SAT         +  + + +             +    V++ S+  + + +  
Sbjct: 178 KKQTLFFSATMPPEITRLTKQFLKDPVRIEASRPATTNENITQLMVKVPSSDPKAKRLAL 237

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
              +   Q    ++    K   + + + L         +H ++   +R + +   R G  
Sbjct: 238 RALIEKAQIETGIVFCNRKTEVDVVAKSLKSHGFDAAAIHGDLDQSQRTKTLAAFRDGSL 297

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIP    V   D             +  IGR  R   S V     T 
Sbjct: 298 KILVASDVAARGLDIPAVSHVFNYDV-----PHHADDYVHRIGRTGRAGRSGVTYMLVTP 352

Query: 694 TKS 696
              
Sbjct: 353 ADD 355


>gi|332308441|ref|YP_004436292.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175770|gb|AEE25024.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 421

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 85/254 (33%), Gaps = 35/254 (13%)

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLRPT 524
           D     I  ++G+          + + GF         R+P+  +   + F      R  
Sbjct: 144 DYYKQNIFSLAGIQVAVLDEADRMFDLGFIKDIRYLFNRMPNPSERLSMLFSATLSYRVQ 203

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL- 583
            +       ++E       +  +  R TG          +    ED    +    ++   
Sbjct: 204 EL-------AYEHMNNPTHVQVEPERKTGTRIKEELFYPSD---EDKMALLLSLMEEEWP 253

Query: 584 -RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++   TK   E ++++L     RV  +  +V   +R++I+ D   GK D+LV  ++ 
Sbjct: 254 DKAIVFANTKHSCEKVSDWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDILVATDVA 313

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT--------I 693
             GL IP    V   D             +  IGR  R   S   I +A          I
Sbjct: 314 ARGLHIPMVSHVFNYD-----LPDDAEDYVHRIGRTGRAGQSGSSISFACERYALNLPAI 368

Query: 694 TKSIQLAIDETTRR 707
              I+ AI  T   
Sbjct: 369 ETYIEHAIPVTEYH 382


>gi|88860699|ref|ZP_01135336.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas tunicata D2]
 gi|88817294|gb|EAR27112.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas tunicata D2]
          Length = 431

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 68/185 (36%), Gaps = 8/185 (4%)

Query: 522 RPTTIVVSAT-PGS-WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           +  T++ SAT P     L Q       +I   +      V+      +        +L  
Sbjct: 194 KKQTLLFSATFPLQVQSLTQSLLTNPVEIQVQSSDASTVVQRVFTVNKGAKTELLAHLIT 253

Query: 580 QQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +   R  L+ V  K   E L + L +R I  +  H +     R  ++ + + G+ D+L+ 
Sbjct: 254 EHKWRQALIFVNAKNHCEHLAQKLEKRGISAKVFHGDKGQSARTRVLEEFKAGEIDILIA 313

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI +  +V   +       RS    +  IGR+ R     + L          
Sbjct: 314 TDIAARGLDIEKLPVVINYN-----LPRSPADYMHRIGRSGRAGEVGLALSLIDQDDYHH 368

Query: 699 LAIDE 703
            +I E
Sbjct: 369 FSIIE 373


>gi|46202850|ref|ZP_00052498.2| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 402

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 90/267 (33%), Gaps = 52/267 (19%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP--SCMDNRPLR 514
            P  L +         +D+  + +  +  +   +  R     + GF  P    +   P  
Sbjct: 133 TPGRLLD--------LIDQGAIRLDSVEALVLDEADRM---LDMGFIQPIRKIVAMVP-- 179

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
                  +  T++ SAT     +      ++   +R        VE+    + V+ +  +
Sbjct: 180 ------KQRQTVLFSAT-MPDSIVGLANSVLHTPVR--------VEVTPVSSTVDKIDQK 224

Query: 575 INLAAQQGLRIL--------------LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +    ++  R L              +   TK  A  + E L +  I    +H       
Sbjct: 225 VLFVDREHKRTLLTDILGGADVVRALVFTRTKHGANRVVELLEKAGIDADAIHGNKSQGA 284

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R + + D R GK   LV  ++   G+D+     V   +   E       S +  IGR AR
Sbjct: 285 RQKALSDFRDGKIKALVATDIAARGIDVDGITHVINFELPNE-----PESYVHRIGRTAR 339

Query: 681 NVNSKVILYADTITKSIQLAIDETTRR 707
              S + L      +S+  A   T++R
Sbjct: 340 AGASGIALSLCDGDESLICA---TSKR 363


>gi|67521618|ref|XP_658870.1| hypothetical protein AN1266.2 [Aspergillus nidulans FGSC A4]
 gi|74657573|sp|Q5BDW4|PRP5_EMENI RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|40746703|gb|EAA65859.1| hypothetical protein AN1266.2 [Aspergillus nidulans FGSC A4]
 gi|259488412|tpe|CBF87827.1| TPA: Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC
           3.6.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q5BDW4]
           [Aspergillus nidulans FGSC A4]
          Length = 1173

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 91/263 (34%), Gaps = 34/263 (12%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     +E ++    +V P +    E+ +   +   + + + 
Sbjct: 724 QTVLFSATFPRNMEALARKTLTKPIEIVVGGRSVVAPEITQIVEVCNEEKKFVRLLELLG 783

Query: 577 LAAQQGL----RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 784 NLYSTDENEDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGI 843

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VL+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 844 FPVLIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 896

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNI--NPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K +    P++V++ +   ++ +       +N     
Sbjct: 897 --------LTEDQERYSVDIAKALKQSGQEVPEAVQKLVDSFLEKVKAGKEKASNSGFGG 948

Query: 751 QQLSLSKKKGKAHLKSLRKQMHL 773
           + L    ++  A       +M  
Sbjct: 949 KGLERLDQERDA------ARMRE 965


>gi|297606423|ref|NP_001058460.2| Os06g0697200 [Oryza sativa Japonica Group]
 gi|255677355|dbj|BAF20374.2| Os06g0697200 [Oryza sativa Japonica Group]
          Length = 308

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 88/242 (36%), Gaps = 28/242 (11%)

Query: 460 TLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519
           +  +Y+       V  + + + +   +   D      L + GF      D+    F+ + 
Sbjct: 4   SFLDYLN------VLNNFLHMSRYLTLDEADR-----LVDLGFE-----DDIREVFDHFK 47

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDE 574
             R  T++ SAT         +  +V+ II   G      +D   E+   + +   +   
Sbjct: 48  AQR-QTLLFSATMPEKIQNFAKSALVKPIIVNVGRAGAANLDVIQEVEYVKEE-ARIIYL 105

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +    +    +L+    K   + + E+L  + +    +H      ER +  +  +  + D
Sbjct: 106 LECLQKTPPPVLVFCEHKADVDYIQEFLLLKGVEAVAIHGGKDDEERKDAFKSFKASEKD 165

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++  +GLDIP+   V   D   E       + +  IGR  R   + V        
Sbjct: 166 VLVATDVASKGLDIPDIQHVINYDMPAE-----IENYVHRIGRTGRRGKTGVATTFINKN 220

Query: 695 KS 696
           ++
Sbjct: 221 QT 222


>gi|222617461|gb|EEE53593.1| hypothetical protein OsJ_36838 [Oryza sativa Japonica Group]
          Length = 676

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           V  E+     +G + ++   TKR A+ L+ Y   R+ + + +H ++   +R   ++  R 
Sbjct: 379 VLGELIKEHAKGGKCIVFTQTKRDADRLS-YTMGRSFQCQALHGDITQAQRERTLKGFRE 437

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G F++L+  ++   GLDIP   LV            S    +   GR  R       +  
Sbjct: 438 GHFNILIATDVAARGLDIPNVDLVI-----HFELPNSSELFVHRSGRTGRAGKKGKAIVM 492

Query: 691 DTITKSIQLAIDETT 705
            +  +S  + + E  
Sbjct: 493 HSYQQSRAIRMVEND 507


>gi|224002607|ref|XP_002290975.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972751|gb|EED91082.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 681

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 92/262 (35%), Gaps = 23/262 (8%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQII----RPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P + E   ++     +E I+      +  VD   E+     +   +   + 
Sbjct: 244 QTVLFSATFPKAVEQLAKKSLRAPLEIIVGGRSVASDSVDQYAEVVEEEDKFLRLLQILG 303

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL--GKFD 634
             A    ++++ V  +  A+ L E L         +H  +   +R   + D +      +
Sbjct: 304 DHADDQKKVIVFVGRQEQADSLFEQLTRCGYSSLSIHGGMDQEDRDSNMSDFKRVDSGVN 363

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   GLD+P CG V    +            +  +GR  R  N  V       T
Sbjct: 364 VLVATSVAGRGLDVPSCGCVVNYAS-----PNHLEDYVHRVGRTGRAGNRGVAFTFVNST 418

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNIN--PQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
              + A        E     N    +N   +S KEK+ +               + D+ +
Sbjct: 419 DEAKFAPSIVRALVEAGQSKNISQELNELSESYKEKVAKGEARWASSGYKGKGYTYDSSE 478

Query: 753 LSLSKKKGKAHLKSLRKQMHLA 774
           L+ S+K     L  L K    A
Sbjct: 479 LNDSQK-----LAQLEK--REA 493


>gi|299538292|ref|ZP_07051577.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
 gi|298726494|gb|EFI67084.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
          Length = 507

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 13/192 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P   ++ +      E + I+   L    ++   ++SA  +  DV   +  
Sbjct: 177 QTLLFSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRLLN 236

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              Q    ++   TKR  ++L + L  R      +H ++   +RI ++R  +  K D+LV
Sbjct: 237 -VHQPELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   S + +   T  +  
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMG 350

Query: 698 QLAI-DETTRRR 708
            L I +ETT++R
Sbjct: 351 YLRIVEETTKKR 362


>gi|224073500|ref|XP_002304104.1| predicted protein [Populus trichocarpa]
 gi|118484805|gb|ABK94270.1| unknown [Populus trichocarpa]
 gi|222841536|gb|EEE79083.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +       +   I
Sbjct: 377 GVAINFVTRDDDRMLFDI 394


>gi|145634056|ref|ZP_01789767.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|145268500|gb|EDK08493.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
          Length = 415

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 91/252 (36%), Gaps = 34/252 (13%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +DE  V +         +  R   L   GF        R +R+    C 
Sbjct: 145 IDYV-KQGVICLDEIQVVV-------LDEADRMFDL---GFI-------RDIRYLLRKCP 186

Query: 522 RPT---TIVVSATPGSWELEQCQGIIVE------QIIRPTGLVDPPVEIRSARTQVEDVY 572
            P    T++ SAT      E     + +      +  + TG      E+     Q +   
Sbjct: 187 APQARLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKE-ELFYPSNQDKMAL 245

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               +  +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G 
Sbjct: 246 LLTLMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGD 305

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
            D+LV  +++  GL I +   V   D         +   +  IGR  R   S V I +A 
Sbjct: 306 LDILVATDVVARGLHISDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFAC 360

Query: 692 TITKSIQLAIDE 703
                   AI+E
Sbjct: 361 EEYAMNLPAIEE 372


>gi|90076664|dbj|BAE88012.1| unnamed protein product [Macaca fascicularis]
          Length = 423

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R G+
Sbjct: 227 MRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGR 286

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K I +  
Sbjct: 287 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITFFT 341

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 342 EDDKPLLRSV 351


>gi|148226210|ref|NP_001079530.1| similar to ATP-dependent, RNA helicase [Xenopus laevis]
 gi|27882196|gb|AAH44017.1| MGC53409 protein [Xenopus laevis]
          Length = 686

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 74/208 (35%), Gaps = 33/208 (15%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L  V +   A++L   L    I V  +H+E    +R  +I+  R GK
Sbjct: 480 MRNLIKKGFTPPVLAFVQSVERAKELFHELIYEGINVDVIHAERTQQQRDNVIQSFREGK 539

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     +V   D     F  S    I  IGR  R  +  K + +  
Sbjct: 540 IWVLICTALLARGIDFKGVNMVINYD-----FPTSAVEYIHRIGRTGRAGHRGKAVSFFT 594

Query: 692 TITKSIQLAI------------DETTRRREKQLEHNKKH----------NINPQSV---K 726
              K +  ++            D     R+ Q +  K+              P+ +    
Sbjct: 595 EDDKPMLRSVASVIQKAGCPIPDYIKSFRKLQSKQKKRMIKRPLKRAQIRTTPKYILEKA 654

Query: 727 EKIMEVIDPILLEDAATTNISIDAQQLS 754
           ++   +I   L E  +  +   D +Q  
Sbjct: 655 KRKRNIIKKNLKEKESKASSQGDHKQPE 682


>gi|21555870|gb|AAM63951.1| Eukaryotic initiation factor 4A, putative [Arabidopsis thaliana]
          Length = 412

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 203 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKE 262

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 263 EWKLETLCDLYETLAIT--QSVIFVNTRRKXDWLTDKMRSRDHTVSATHGDMDQNTRDII 320

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 321 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 375

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 376 GVAINFVTRDDERMLFDI 393


>gi|29346241|ref|NP_809744.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568326|ref|ZP_04845737.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
 gi|29338136|gb|AAO75938.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842399|gb|EES70479.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
          Length = 422

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 76/193 (39%), Gaps = 28/193 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       ++II+   +            Q + 
Sbjct: 182 QTIMFSATMPAKIQQLAKTILNNPAEIKLAVSRPADKIIQAAYVC--------YENQ-KL 232

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                    +   R+++   +K   +++T+ L    + V  MHS+++  +R  ++ + + 
Sbjct: 233 GIIRSLFTDEVPERVIIFASSKIKVKEVTKALKMMKLNVGEMHSDLEQAQREVVMHEFKA 292

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+ ++LV  +++  G+DI +  LV   D             +  IGR AR  N  V + +
Sbjct: 293 GRINILVATDIVARGIDIDDIRLVINFDV-----PHDSEDYVHRIGRTARANNDGVALTF 347

Query: 690 ADTITKSIQLAID 702
                +S   +I+
Sbjct: 348 ISEKEQSNFKSIE 360


>gi|56477513|ref|YP_159102.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
 gi|56313556|emb|CAI08201.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
          Length = 508

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 69/195 (35%), Gaps = 15/195 (7%)

Query: 521 LRPTTIVVSATPGSWELEQCQGII-----VEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            +   ++ SAT          G++     VE   R T        + S     +   D +
Sbjct: 183 KQRQNLLFSATFSDEIRSLANGLLHNPGCVEVARRNTASELVQQSVYSVAQ--KQKRDLL 240

Query: 576 NLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
               +Q    ++L+   TK  A  L EYL +  I    +H       R   + + + G  
Sbjct: 241 VHLVKQNDWHQVLVFTRTKHGANKLAEYLAKHGIPSAAIHGNKSQSARTRALAEFKDGSL 300

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
            VLV  ++   GLDI +   V   +             +  IGR  R  +S   + + D+
Sbjct: 301 PVLVATDIAARGLDIDQLPHVVNFE-----LPNVPEDYVHRIGRTGRAGSSGAAVSFVDS 355

Query: 693 ITKSIQLAIDETTRR 707
             +    AI+   +R
Sbjct: 356 EERQHLTAIERLIKR 370


>gi|15221761|ref|NP_175829.1| EIF4A-2; ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|1170505|sp|P41377|IF4A2_ARATH RecName: Full=Eukaryotic initiation factor 4A-2; Short=eIF-4A-2;
           AltName: Full=ATP-dependent RNA helicase eIF4A-2;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 19
 gi|4585969|gb|AAD25605.1|AC005287_7 Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|14423372|gb|AAK62368.1|AF386923_1 Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|16226681|gb|AAL16231.1|AF428462_1 At1g54270/F20D21_52 [Arabidopsis thaliana]
 gi|16556|emb|CAA46189.1| eukaryotic translation initiation factor 4A-2 [Arabidopsis
           thaliana]
 gi|21593545|gb|AAM65512.1| eukaryotic translation initiation factor 4A, putative [Arabidopsis
           thaliana]
 gi|30725682|gb|AAP37863.1| At1g54270 [Arabidopsis thaliana]
 gi|110740791|dbj|BAE98493.1| Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|332194952|gb|AEE33073.1| translation initiation factor 4A-2 [Arabidopsis thaliana]
          Length = 412

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 17/192 (8%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 203 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKE 262

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 263 DWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 320

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 321 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 375

Query: 685 KVILYADTITKS 696
            V +   T+   
Sbjct: 376 GVAINFVTLDDQ 387


>gi|288870006|ref|ZP_06112545.2| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
           13479]
 gi|288868832|gb|EFD01131.1| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
           13479]
          Length = 561

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 98/258 (37%), Gaps = 34/258 (13%)

Query: 524 TTIVVSAT----PGSWELEQCQGIIVEQIIRP----TGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT          +  +  +  ++++       +     E++  +T+VE +   +
Sbjct: 180 QTVMFSATMPQAIADIAHKFQKEPVTVKVVKKELTVPKVTQYYYEVKP-KTKVEVMCRLL 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++ A +    ++   TK+  ++L + L  R      +H ++K ++R  ++   R G+ D+
Sbjct: 239 DMYAPK--LSVVFCNTKKGVDELVQALQGRGYFAEGLHGDLKQIQRDRVMNSFRNGRTDI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+D+ +   V   D       +     +  IGR  R      I ++  + K
Sbjct: 297 LVATDVAARGIDVDDVEAVFNYD-----LPQDDEYYVHRIGRTGRAGREG-IAFSFVVGK 350

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
            +          R+ Q     K  I PQ++          +        +  ++    ++
Sbjct: 351 EVYKL-------RDIQ--RYCKTKIIPQAI--------PSLNDVTGIKVDKILENVADTI 393

Query: 756 SKKKGKAHLKSLRKQMHL 773
            +      +  L K++  
Sbjct: 394 EESDLSEMINILEKKLLE 411


>gi|194336034|ref|YP_002017828.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308511|gb|ACF43211.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 599

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 6/157 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK M  +L E L  R      ++ ++   +R   +  L+ G   +++  ++   
Sbjct: 243 MLIFVRTKTMTLELAEKLQARGYGAAALNGDMPQNQRERTVDQLKNGALSIVIATDVAAR 302

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     K++  +I+ 
Sbjct: 303 GLDVERISHVINYD-----IPSDTESYVHRIGRTGRAGRAGDAILFVSPREKNMLYSIER 357

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
            T  R + +E      IN + + +    + D I  ED
Sbjct: 358 ATHSRIELMELPTTEVINNKRIAKFNQRITDTIAAED 394


>gi|156375512|ref|XP_001630124.1| predicted protein [Nematostella vectensis]
 gi|156217139|gb|EDO38061.1| predicted protein [Nematostella vectensis]
          Length = 446

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 7/142 (4%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
              E      ++  + +EI    ++  + L+   TKR A++LT  L         +H + 
Sbjct: 282 DVCEDHEKEHKLLKLLEEIM--GEKENKTLIFTETKRRADELTRKLRSDGWPAMCIHGDK 339

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
              ER  ++ + R G   +LV  ++   GLDI +   V   D     F       +  IG
Sbjct: 340 AQPERDWVLSEFRKGHAPILVATDVASRGLDISDIKFVINFD-----FPNCTEDYVHRIG 394

Query: 677 RAARNVNSKVILYADTITKSIQ 698
           R AR+  +       T+  + Q
Sbjct: 395 RTARSDRTGTSYTFFTVNNAKQ 416


>gi|332796635|ref|YP_004458135.1| DEAD/DEAH box helicase domain-containing protein [Acidianus
           hospitalis W1]
 gi|332694370|gb|AEE93837.1| DEAD/DEAH box helicase domain protein [Acidianus hospitalis W1]
          Length = 370

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 16/176 (9%)

Query: 527 VVSAT-PGSWE---LEQCQGIIVEQI--IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             SAT P   E    E    I   ++  I+P  +     E++  R ++  + DE+     
Sbjct: 187 FFSATVPEEVESLAKEFSPNIEFLKVDDIKPVEIEHLFYEVKGWRDKISKLKDEL----D 242

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
              + ++ V TK+  E+L E L + +  +  +H ++    R+  +   R GK +VL+  +
Sbjct: 243 DNEKTIVFVNTKKKVEELYEELRD-DFEISLLHGDLPQRVRLRNLSSFRRGKTNVLLSTD 301

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           L   G+D+ +   V   D  ++       + I  +GR  R     + +   T   +
Sbjct: 302 LASRGIDVIDVTKVINFDTPRDV-----ETYIHRVGRTGRMGRKGIAITFYTRRDA 352


>gi|325296847|ref|NP_001191665.1| ATP-dependent RNA helicase DDX5 [Aplysia californica]
 gi|304441889|gb|ADM34180.1| ATP-dependent RNA helicase DDX5 [Aplysia californica]
          Length = 600

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 89/241 (36%), Gaps = 35/241 (14%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
            + + GF         P   +  + +RP   T++ SAT         +  + + I    G
Sbjct: 263 RMLDMGFE--------PQIRKILDQIRPDRQTLMWSATWPKEVRRLAEEFLNDYIQVNIG 314

Query: 554 LVDP--------PVEI---RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
            +           +++        ++  + +EI    ++  + L+ V TKR A+D+   +
Sbjct: 315 ALQLTANHNILQIIDVCMDHEKEEKLVKLLNEIMQ--EKENKTLIFVETKRKADDIARRM 372

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
                 V  +H +    ER   + D R G+  +LV  ++   GLD+ +   V   D    
Sbjct: 373 KRDGWPVLSIHGDKSQQERDWALNDFRNGRNPILVATDVASRGLDVEDIKFVINFD---- 428

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
            +       +  IGR  R+ N+       T   + Q +      R  KQ+       I+P
Sbjct: 429 -YPNCSEDYVHRIGRTGRSTNTGTAYTFFTPGNAKQASDLVNVLREAKQV-------ISP 480

Query: 723 Q 723
           +
Sbjct: 481 K 481


>gi|311031130|ref|ZP_07709220.1| DEAD/DEAH box helicase domain protein [Bacillus sp. m3-13]
          Length = 507

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 81/201 (40%), Gaps = 17/201 (8%)

Query: 522 RPTTIVVSAT-PGS-------WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
           +  T++ SAT P         +  E     +  + +  + +    VE+   + + + +  
Sbjct: 175 KKQTLLFSATMPAPIRAIAERFMSEPVNVKVQAKELTISNIQQFYVEV-PEKKKFDTLTR 233

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            ++   Q     ++   TKR  ++L++ L  R      +H ++   +R+ ++R  + G  
Sbjct: 234 LLD--IQSPELAIIFGRTKRRVDELSDALNVRGYSAEGIHGDLSQAKRMSVLRKFKEGSI 291

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
           DVLV  ++   GLDI     V   D       +   S +  IGR  R   S   I +   
Sbjct: 292 DVLVATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKSGLAITFVSP 346

Query: 693 ITKSIQLAIDETTRRREKQLE 713
              S    ++  T+R+  +L+
Sbjct: 347 REVSYLHHVERVTKRKMDKLK 367


>gi|304411815|ref|ZP_07393426.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307303417|ref|ZP_07583172.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304349675|gb|EFM14082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913777|gb|EFN44199.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 427

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 106/317 (33%), Gaps = 49/317 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L + +  +++         + ++S +   +  R  +L   GF   L   +D  P +
Sbjct: 142 TPGRLLDLLSSNAI--------KLNRVSALVLDEADRMLSL---GFTEELAQVLDALPAK 190

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT--GLVDPPVEIRSARTQVEDVY 572
                     T++ SAT    E+ +    ++   +        +  +  R          
Sbjct: 191 --------KQTLLFSAT-FPEEVRELTAKLLNAPLEYQLQSEQESTIHQRVITVNRPMKT 241

Query: 573 DEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             +    ++    + L+ V  K     L + L +R I     H +     R  ++   + 
Sbjct: 242 ALLAHLIKEHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKN 301

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+  VL+  ++   G+DI +  +V   D       RS    +  IGR+ R   + + +  
Sbjct: 302 GEISVLIATDIAARGIDIDKLPVVINFD-----LPRSPADYMHRIGRSGRAGEAGLAVTL 356

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
            +        + E         + NK          + + E I     +D     +   A
Sbjct: 357 ISHEDYHHFGVIE---------KKNK---------LKLVREQIVGFEADDEMPAELLEQA 398

Query: 751 QQLSLSKKKGKAHLKSL 767
           + ++  +  GK   K L
Sbjct: 399 KPVAKPEGTGKKKRKQL 415


>gi|297834230|ref|XP_002884997.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330837|gb|EFH61256.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 412

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 203 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKE 262

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 263 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 320

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 321 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 375

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 376 GVAINFVTHDDERMLFDI 393


>gi|311111789|ref|YP_003983011.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931]
 gi|310943283|gb|ADP39577.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931]
          Length = 580

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 84/234 (35%), Gaps = 25/234 (10%)

Query: 479 TIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGSWEL 537
           T+ Q+  +   +        + GF LPS       +   +      T++ SAT PG    
Sbjct: 172 TLTQVKTVVLDEADEM---LDLGF-LPSVE-----KIMGYLPTDRQTMLFSATMPGPVIT 222

Query: 538 EQCQGIIVEQIIR---PTGLVDPPVEIRSARTQV-----EDVYDEINLAAQQGLRILLTV 589
              + +     I    P         IR    +V     +++   I  A  +G R ++  
Sbjct: 223 MARKYMTKPMHISAADPEDHAKTKASIRQVVYRVHHMDKDEMLGRILRAHGRG-RTVIFT 281

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            TKR A  + + L  R      +H ++    R + +R  R GK D+LV  ++   G+D+ 
Sbjct: 282 KTKRDAARVADELIARGFAAAPLHGDLNQGAREQALRAFRNGKVDILVATDVAARGIDVE 341

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAID 702
           +   V             + + +   GR  R  +    + + D    +    I+
Sbjct: 342 DVTHVINHRV-----PEDEKTYLHRTGRTGRAGHEGTAVTFVDWEDIARWRLIN 390


>gi|168022304|ref|XP_001763680.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685173|gb|EDQ71570.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 549

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 78/205 (38%), Gaps = 20/205 (9%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII------ 549
            L E GFR       + L         P  ++ SAT           ++   +I      
Sbjct: 302 CLLESGFRDQVLQLVQALA-------MPQILMYSATILPAIERFSSSLLKNPLIISVGTP 354

Query: 550 -RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER-NI 607
            +P   V   +     + + + +++ +         +++ V ++  ++ L E +     I
Sbjct: 355 RQPNRAVHQIILWVETKNKKKKLFEILKSRVHYRPPVVVFVNSRMGSDLLAEAIRTVTGI 414

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           + R +H E    +R E +++  +G+  V+V   +L  GLD+     V I D     F  S
Sbjct: 415 QARSLHGEKSIKDRRETLKNFLMGEIPVIVATGVLGRGLDLLRVTQVIIFD-----FPSS 469

Query: 668 KTSLIQTIGRAARNVNSKVILYADT 692
               I  IGRA+R  N+   +    
Sbjct: 470 IEEYIHMIGRASRLSNAGSAMVFVN 494


>gi|55562721|gb|AAH86320.1| Ddx5 protein [Mus musculus]
          Length = 648

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 338 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 387

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 388 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 447

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 448 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 482


>gi|59712046|ref|YP_204822.1| DEAD-box ATP dependent DNA helicase [Vibrio fischeri ES114]
 gi|59480147|gb|AAW85934.1| ATP-dependent RNA helicase, DEAD box family [Vibrio fischeri ES114]
          Length = 421

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 80/225 (35%), Gaps = 11/225 (4%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
            +  T++ SAT         Q ++   + I+        V  R       +    +    
Sbjct: 191 KQKQTLLFSATFPEEVQTLTQALLNNPVEIQLQSADASTVVQRVFTVNKGEKTSVLAHLI 250

Query: 580 QQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           Q+    + L+ V  K     L + L +R I     H +     R  ++   + G+ DVL+
Sbjct: 251 QKNQWRQALIFVNAKNACNHLADKLAKRGIAAEVFHGDKGQGARTRVLEAFKAGEIDVLI 310

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI +  +V   D       RS    +  IGR+ R     + L         
Sbjct: 311 ATDIAARGLDIEKLPVVINFD-----LPRSPADYMHRIGRSGRAGEVGLALSLIDYEDYH 365

Query: 698 QLAIDETTRRREKQLEHNKKHNI-NPQSVKEKIMEVIDPILLEDA 741
              I E  ++ + +LE  +       + + E ++  I P+   + 
Sbjct: 366 HFKIIE--KKNKIRLEREQVEGFEVNEEITEALLASIKPVAKPEG 408


>gi|6118555|gb|AAF04150.1|AF195417_1 DEAD-box protein abstrakt [Homo sapiens]
          Length = 621

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 347 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 400

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 401 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 459

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 460 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 514

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 515 YVHRIGRTGRSGNTGIATTF------INKACDES 542


>gi|31794389|ref|NP_856882.1| ATP-dependent RNA helicase RhlE [Mycobacterium bovis AF2122/97]
 gi|31619985|emb|CAD95329.1| PROBABLE ATP-DEPENDENT RNA HELICASE RHLE [Mycobacterium bovis
           AF2122/97]
          Length = 527

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   +  A  +G   ++   TKR A+ + + L ER   V  +H ++  L R + ++  R
Sbjct: 259 ELVSRVLQARDRG-ATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFR 317

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G  DVLV  ++   G+DI +   V             +   +  IGR  R   + V + 
Sbjct: 318 TGGIDVLVATDVAARGIDIDDVTHVINYQC-----PEDEKMYVHRIGRTGRAGRTGVAVT 372

Query: 689 YADTITKSIQLAIDE 703
             D         ID+
Sbjct: 373 LVDWDELPRWSMIDQ 387


>gi|319956027|ref|YP_004167290.1| transcription-repair coupling factor [Nitratifractor salsuginis DSM
           16511]
 gi|319418431|gb|ADV45541.1| transcription-repair coupling factor [Nitratifractor salsuginis DSM
           16511]
          Length = 998

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 84/218 (38%), Gaps = 22/218 (10%)

Query: 197 IVMAPNKILAAQLY-SEFKNFFPHNAVEYFVSYYDYYQPE-AYVPRTDTYIEKESSINEQ 254
           ++  P K  A  L   + K+     AV  + +   +  P+    P  D       S   +
Sbjct: 10  LLSTPAKERAELLVVRDDKSAERAEAVARYRAVRPFVLPQLRLSPGEDL-----RSYGPE 64

Query: 255 I-DRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLV 313
           I + +   A     E    ++    +    +   E++  +  +L+ G++++ + L   L 
Sbjct: 65  IRELLAELAAYHRYEGEKLLIAPLHTLSLPLPRPETFGTL--RLEFGETLDLEALKDRLY 122

Query: 314 KQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-- 371
           +  Y   D+    G   V GD I+IF    E   WR+S+F  +IE I  F P T ++   
Sbjct: 123 RWGYHFVDLVSEAGEVSVRGDIIDIFSPGAE-HPWRISLFDEEIESIHPFDPDTQKRRGD 181

Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
             +E + ++     +              E LK R+ +
Sbjct: 182 EELEAVTLHPAFLALESEEF---------EALKERVEQ 210



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 76/201 (37%), Gaps = 15/201 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIV---EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             + +SATP    L      I    E +  PT  V     ++S   ++  V + I    +
Sbjct: 630 HLLSMSATPIPRSLNMALSKIKSFSEILTPPTERVGVRTFVKSFDPKI--VKEAILRERR 687

Query: 581 QGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G +      +    E+  + L E   ++R+  +HS+V   +  + +     G++D+L+ 
Sbjct: 688 RGGQTFYVYNSIAGIEEKAKQLRELIPDLRMTVLHSKVTAAQTEKEMMKFEAGEYDLLLS 747

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+ +P    + +  A+  G       L Q  GR  R                 +
Sbjct: 748 TTIVESGIHLPNANTMIVDGAENFGI----ADLHQLRGRVGRGGKEGYCYLLVED----K 799

Query: 699 LAIDETTRRREKQLEHNKKHN 719
             + E  RRR   LE + +  
Sbjct: 800 ERLPENARRRLLALESHSELG 820



 Score = 44.7 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 81/230 (35%), Gaps = 37/230 (16%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E   + I  A + G + ++ V T     +    L E      I V  +       ++
Sbjct: 515 GKTEVAMNAIFAAVRNGYQAMMVVPTTLLSAQHYRSLKERFAPWEIEVAQLDRYTPAKQK 574

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT--------SLIQ 673
            EI+R L  G+  V+VG + L  G       LV + +  K G  + +          L+ 
Sbjct: 575 REILRRLEEGELKVVVGTHALL-GAKFKNLALVVVDEEHKFGVKQKEALKEMALNVHLLS 633

Query: 674 TIG----RAARNVNSKVILYADTITKSIQLAIDET----------------TRRREKQL- 712
                  R+     SK+  +++ +T   +     T                 RRR  Q  
Sbjct: 634 MSATPIPRSLNMALSKIKSFSEILTPPTERVGVRTFVKSFDPKIVKEAILRERRRGGQTF 693

Query: 713 -EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761
             +N    I  ++  +++ E+I  + +    +   +   ++  +  + G+
Sbjct: 694 YVYNSIAGIEEKA--KQLRELIPDLRMTVLHSKVTAAQTEKEMMKFEAGE 741



 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 139 TFFQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVIEAMQR--- 194
             F  Q  +  + DQ  AI Q+++ +       +LL    G GKT      I A  R   
Sbjct: 473 ALFLSQAGFEHTEDQMEAIRQIMEELSGGGMMDRLLSADVGFGKTEVAMNAIFAAVRNGY 532

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQP 234
            A+++ P  +L+AQ Y   K  F    +E  V+  D Y P
Sbjct: 533 QAMMVVPTTLLSAQHYRSLKERFAPWEIE--VAQLDRYTP 570


>gi|308370192|ref|ZP_07420594.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu002]
 gi|308378233|ref|ZP_07481964.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu009]
 gi|308380612|ref|ZP_07490534.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu011]
 gi|308406085|ref|ZP_07669502.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu012]
 gi|308325014|gb|EFP13865.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu002]
 gi|308353157|gb|EFP42008.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu009]
 gi|308360899|gb|EFP49750.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu011]
 gi|308364543|gb|EFP53394.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu012]
          Length = 524

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   +  A  +G   ++   TKR A+ + + L ER   V  +H ++  L R + ++  R
Sbjct: 256 ELVSRVLQARDRG-ATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFR 314

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G  DVLV  ++   G+DI +   V             +   +  IGR  R   + V + 
Sbjct: 315 TGGIDVLVATDVAARGIDIDDVTHVINYQC-----PEDEKMYVHRIGRTGRAGRTGVAVT 369

Query: 689 YADTITKSIQLAIDE 703
             D         ID+
Sbjct: 370 LVDWDELPRWSMIDQ 384


>gi|240850330|ref|YP_002971723.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
           grahamii as4aup]
 gi|240267453|gb|ACS51041.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
           grahamii as4aup]
          Length = 467

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 15/192 (7%)

Query: 524 TTIVVSATPGSWELEQC----QGIIVEQIIRPTGLVDPPVE--IRSARTQVED---VYDE 574
            T+  SAT      +         +  ++ + +       +  ++S     +    + + 
Sbjct: 184 QTLFFSATMAPEITKLTKQFLHSPVSVEVTKASSTATTITQRLVKSGSKSWDKRAVLREL 243

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I+    +    ++    KR   +L   L   N  V  +H ++    R+  + D +  K  
Sbjct: 244 IHNEGAELQNAIIFCNRKRDISELFRSLVRHNFSVGALHGDMDQYSRMSTLADFKDNKLT 303

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTI 693
           +LV  ++   GLDIP    V   D             I  IGR  R N + K        
Sbjct: 304 LLVASDVAARGLDIPAVSHVFNYDV-----PTHAEDYIHRIGRTGRANRSGKAFTIVTKA 358

Query: 694 TKSIQLAIDETT 705
            +    AI+E +
Sbjct: 359 DQKYINAIEEMS 370


>gi|227528896|ref|ZP_03958945.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
           ATCC 49540]
 gi|227351170|gb|EEJ41461.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
           ATCC 49540]
          Length = 501

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 99/268 (36%), Gaps = 29/268 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVE---IRSARTQVEDVYDEIN 576
            T++ SAT    E+++     +       I+   L    V+   +++   +  D+   + 
Sbjct: 176 QTLLFSAT-MPPEIKKIGVKFMTDPTMVRIKAKELTTDLVDQYYVKARDYEKFDIMTRLI 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                 L  ++   TKR  ++L+  L  R      +H ++    R +I++  + G+ D+L
Sbjct: 235 DVQDPDL-TIVFGRTKRRVDELSRGLVARGYNAAGIHGDLSQDRRTKIMKKFKHGELDIL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK- 695
           V  ++   GLDI     V   D           S +  IGR  R  +  V L   T  + 
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEM 348

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI-----DPILLEDAATTNISIDA 750
                I++ TR R   L+        P + +E     +     D   L    +T    +A
Sbjct: 349 DYLREIEKLTRVRMLPLK--------PPTAEEAFKGQVASAFNDIDELISQDSTERYQEA 400

Query: 751 QQLSLSKKKGKAHLKSLRKQM-HLAADN 777
            +  L+       + +L  +M    A +
Sbjct: 401 AEKLLATHDATDLVAALLNEMTKEPASD 428


>gi|221487592|gb|EEE25824.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
          Length = 475

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 71/208 (34%), Gaps = 27/208 (12%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           ++       ++ SAT             P + E+     + ++ + +    V+   ++  
Sbjct: 270 KFVPRERQILMYSATFPVTVKDFKHKYLPDAHEINLMDELTLKGVTQYYAFVEERQKVH- 328

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q     ++   +    E L + + E      Y+H+ +    R  
Sbjct: 329 -------CLNTLFSKLQINQ-AIIFCNSVTRVELLAKKITELGYSCFYIHARMMQSHRNR 380

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +L   G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 381 VFHDFRNGACRCLVSSDLFTRGIDIQSVNVVINFD-----FPKNSETYLHRIGRSGRFGH 435

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQ 711
             + +   T      L   E+    E Q
Sbjct: 436 LGLAINLITYDDRFNLYRIESELGTEIQ 463


>gi|219559266|ref|ZP_03538342.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T17]
          Length = 508

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   +  A  +G   ++   TKR A+ + + L ER   V  +H ++  L R + ++  R
Sbjct: 256 ELVSRVLQARDRG-ATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFR 314

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G  DVLV  ++   G+DI +   V             +   +  IGR  R   + V + 
Sbjct: 315 TGGIDVLVATDVAARGIDIDDVTHVINYQC-----PEDEKMYVHRIGRTGRAGRTGVAVT 369

Query: 689 YADTITKSIQLAIDE 703
             D         ID+
Sbjct: 370 LVDWDELPRWSMIDQ 384


>gi|237830431|ref|XP_002364513.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211962177|gb|EEA97372.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221507386|gb|EEE32990.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 475

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 71/208 (34%), Gaps = 27/208 (12%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           ++       ++ SAT             P + E+     + ++ + +    V+   ++  
Sbjct: 270 KFVPRERQILMYSATFPVTVKDFKHKYLPDAHEINLMDELTLKGVTQYYAFVEERQKVH- 328

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q     ++   +    E L + + E      Y+H+ +    R  
Sbjct: 329 -------CLNTLFSKLQINQ-AIIFCNSVTRVELLAKKITELGYSCFYIHARMMQSHRNR 380

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +L   G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 381 VFHDFRNGACRCLVSSDLFTRGIDIQSVNVVINFD-----FPKNSETYLHRIGRSGRFGH 435

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQ 711
             + +   T      L   E+    E Q
Sbjct: 436 LGLAINLITYDDRFNLYRIESELGTEIQ 463


>gi|187734531|ref|YP_001876643.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424583|gb|ACD03862.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 423

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 81/222 (36%), Gaps = 20/222 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D        + G+          + + GF  P+       +       +  T + SAT
Sbjct: 138 LIDHLERRTVSLDGVETLILDEADHMLDMGFA-PALK-----KIVSKIPRKRHTQMFSAT 191

Query: 532 PGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRS--ARTQVEDVYDEINLAAQQGL-- 583
                + Q    ++++     + P       VE       +Q E     + L  QQ L  
Sbjct: 192 -MPDNIRQLAQTLLQKPETVRVSPPSSTADRVEQFLCMVGSQSEKRLLTLELLKQQELPG 250

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+   T+  A+ L  +L  ++     +H +     R  ++R+ R GK  VLV  ++  
Sbjct: 251 RTLIFTRTRHGADRLASFLSGKDYPASAIHGDKSQGRRERMLREFRSGKTPVLVATDIAA 310

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            G+D+ +  LV   D  +E         +  IGR AR   + 
Sbjct: 311 RGIDVKDVRLVINYDLPEE-----PEVYVHRIGRTARAGAAG 347


>gi|190891965|ref|YP_001978507.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
 gi|190697244|gb|ACE91329.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
          Length = 527

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 62/181 (34%), Gaps = 13/181 (7%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVED-----VYDEI 575
            T+  SAT  P   +L        E+I +         V  R   +  +D     V  E+
Sbjct: 202 QTLFFSATMPPEIQKLADRFLQNPERIEVAKPASTAKTVTQRFVASHSKDYEKRAVLREL 261

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A  +    ++    K+   DL   L      V  +H ++    R  ++++ R G   +
Sbjct: 262 VRAQTELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTTMLQNFRDGNLQL 321

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP+   V   D             +  IGR  R   S       T   
Sbjct: 322 LVASDVAARGLDIPDVSHVFNFDVPI-----HSEDYVHRIGRTGRAGRSGAAFTLVTKRD 376

Query: 696 S 696
           +
Sbjct: 377 T 377


>gi|72548684|ref|XP_843415.1| ATP-dependent RNA helicase [Leishmania major strain Friedlin]
 gi|323363932|emb|CBZ12938.1| putative ATP-dependent RNA helicase [Leishmania major strain
           Friedlin]
          Length = 923

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 93/253 (36%), Gaps = 26/253 (10%)

Query: 458 PPTLFEYIPEDS-------LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR-LPSCMD 509
           P  L +   E+         L +DE+   +        G   +   L    +  +P+  D
Sbjct: 599 PGRLRDMFNEEYLSFSAIKFLILDEADRMLE------MGFEEQIEELVASRYTDMPTVDD 652

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
            +   F       P  I+  A    +   +   + V ++   T  +   +E      +++
Sbjct: 653 RQTFMFS---ATFPQRILNLA--KRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDNEKMD 707

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   I       + +L+ V TK+MAED+   L+   I    +H + +  +R   + D +
Sbjct: 708 RLLQIIYGHEMSDM-VLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFK 766

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
                +LV  ++   GLDIP+   V   D  +E            IGR  R  N   I  
Sbjct: 767 QKVTPILVATDVASRGLDIPDVAHVVQFDLPQE-----MDDYTHRIGRTGRAGNKG-IAT 820

Query: 690 ADTITKSIQLAID 702
           A     + +LA+D
Sbjct: 821 AFYNRNNRRLALD 833


>gi|27468597|ref|NP_765234.1| ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|81843521|sp|Q8CRP6|Y1679_STAES RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SE_1679
 gi|27316144|gb|AAO05278.1|AE016749_224 ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
          Length = 509

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 78/196 (39%), Gaps = 17/196 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPTG------LVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      EL Q Q +   +II+          +D    I     + +   + +
Sbjct: 177 QTMLFSATMPKAIQELVQ-QFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFL 235

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +    Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+
Sbjct: 236 D--VHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLDI     V   D       +   S    IGR  R     + + + + I 
Sbjct: 294 LVATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIE 348

Query: 695 KSIQLAIDETTRRREK 710
                 I++   RR K
Sbjct: 349 MDYIRQIEDVNNRRMK 364


>gi|260796379|ref|XP_002593182.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae]
 gi|229278406|gb|EEN49193.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae]
          Length = 614

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 7/134 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D +N   ++    L  V TK+ A+ L  +LY     V  +H +    ER + +   R 
Sbjct: 389 LLDLLNATGKEDSLTLTFVETKKGADSLEAFLYSEGYPVSSIHGDRSQREREDALMTFRT 448

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI--L 688
           G   +LV   +   GLDIP    V   D             +  IGR  R  N  +    
Sbjct: 449 GVTPILVATAVAARGLDIPNVKHVINFD-----LPSDIDEYVHRIGRTGRVGNLGLATSF 503

Query: 689 YADTITKSIQLAID 702
           + D     ++  +D
Sbjct: 504 FNDKNRNVVRDLVD 517


>gi|237681149|ref|NP_001153721.1| ATP-dependent RNA helicase belle [Tribolium castaneum]
 gi|270008148|gb|EFA04596.1| belle [Tribolium castaneum]
          Length = 699

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           VE    R+ + D+ +   ++        L+ V TK+ A+ L E+L+     V  +H +  
Sbjct: 451 VEEHDKRSFLLDLLNAAEMSQPSAESLTLVFVETKKGADSLEEFLHFEGYPVTSIHGDRS 510

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER + +R  R G   +LV   +   GLDIP    V   D             +  IGR
Sbjct: 511 QREREDALRQFRSGNTPILVATAVAARGLDIPHVKHVINFD-----LPSDIEEYVHRIGR 565

Query: 678 AARNVNSKVILYADTITKS 696
             R  N  +          
Sbjct: 566 TGRMGNLGLATSFFNDRNR 584


>gi|21233204|ref|NP_639121.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770146|ref|YP_244908.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188993353|ref|YP_001905363.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           campestris str. B100]
 gi|32363344|sp|Q8P4D4|RHLB_XANCP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81303902|sp|Q4UPY5|RHLB_XANC8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739237|sp|B0RWT6|RHLB_XANCB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|21115552|gb|AAM43476.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575478|gb|AAY50888.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167735113|emb|CAP53325.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 573

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+              +  +             + + GF      D R L   
Sbjct: 141 TPGRLIDYV----------KQHKVVSLHACEICVLDEADRMFDLGFI----KDIRFLLRR 186

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIR---SARTQVED 570
                   T++ SAT     LE     + E    ++    +    V  R    +  + + 
Sbjct: 187 MPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQT 246

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +   ++ G R ++ V TK   E +   L     RV  +  +V   +R  ++   + 
Sbjct: 247 LLLGLLSRSE-GARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G+ ++LV  ++   GL I     V   D             +  IGR AR       I +
Sbjct: 306 GQLEILVATDVAARGLHIDGVKYVYNYD-----LPFDAEDYVHRIGRTARLGEEGDAISF 360

Query: 690 ADT 692
           A  
Sbjct: 361 ACE 363


>gi|301064428|ref|ZP_07204851.1| helicase C-terminal domain protein [delta proteobacterium NaphS2]
 gi|300441469|gb|EFK05811.1| helicase C-terminal domain protein [delta proteobacterium NaphS2]
          Length = 326

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 75/214 (35%), Gaps = 15/214 (7%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPT 552
            + + GF      D R + +   +  +  T+  SAT         +      +   I P 
Sbjct: 47  RMLDMGFI----PDVRKIVYSAPHKDKRQTMFFSATLTPQVERLAEQWTKNPVHVEIEPE 102

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAA--QQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
            +    ++ R      E+ +  +      Q+  R+L+ V  +     L E L    I   
Sbjct: 103 QVAAESIKQRVYIVTTEEKFALLLNLIIGQKLERVLVFVNRRDQTRHLAEKLRRYRINCA 162

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +  EV   +RI+ + + R G+  VLV  ++   GL +     V           +    
Sbjct: 163 VLSGEVPQNKRIKTLENFRSGRVRVLVATDVAARGLHVEGISHVINF-----TLPQDPED 217

Query: 671 LIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
            +  IGR  R   S + + +A         AI+E
Sbjct: 218 YVHRIGRTGRAGASGISVSFACEEDSFYIPAINE 251


>gi|296533085|ref|ZP_06895723.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
 gi|296266590|gb|EFH12577.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
          Length = 389

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 83/237 (35%), Gaps = 21/237 (8%)

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
           D       ++ G+          + + GF  P+       R          T+  SAT  
Sbjct: 138 DHVQTGAAKLQGVEVLVLDEADQMLDRGF-WPAVK-----RLSSVMSKNRQTLFFSAT-M 190

Query: 534 SWELEQCQGIIVEQI----IRPTGLVDPPVE---IRSARTQVEDVYDEINLAAQQGLRIL 586
             E+ +    +++      + P       +E   I    +Q   +  E+      G R L
Sbjct: 191 PAEIAKIAAEMLKDPAKVSVTPVATTAERIEQKLIHIDASQKRVLLSEMLRQPGIG-RAL 249

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +   TK  A+ +T++L    I    +H +    +R   + + R G+  +LV  ++   G+
Sbjct: 250 VFARTKHGADRVTKHLNADGIAAHAIHGDRSQGQRERALAEFRTGRAPILVATDIASRGI 309

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAID 702
           D+     V   D        +  + +  IGR AR   S   I +      +   A++
Sbjct: 310 DVDGVTHVFQFD-----LPDTPEAYVHRIGRTARAGASGEAIAFCAPDEVAKLKAVE 361


>gi|282876512|ref|ZP_06285378.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus
           epidermidis SK135]
 gi|281294764|gb|EFA87292.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus
           epidermidis SK135]
 gi|329735713|gb|EGG71996.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU028]
          Length = 509

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 78/196 (39%), Gaps = 17/196 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPTG------LVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      EL Q Q +   +II+          +D    I     + +   + +
Sbjct: 177 QTMLFSATMPKAIQELVQ-QFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFL 235

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +    Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+
Sbjct: 236 D--VHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLDI     V   D       +   S    IGR  R     + + + + I 
Sbjct: 294 LVATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIE 348

Query: 695 KSIQLAIDETTRRREK 710
                 I++   RR K
Sbjct: 349 MDYIRQIEDVNNRRMK 364


>gi|91179152|gb|ABE27760.1| pl10-like protein [Chlamys farreri]
          Length = 760

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 5/115 (4%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D +N AA      L  V TK+ A+ L ++L         +H +    ER E +R  R 
Sbjct: 529 LLDLLNAAAGPEALTLTFVETKKGADALEDFLIVEGYPATSIHGDRSQKEREEALRQFRN 588

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           G   +LV   +   GLDIP    V   D             +  IGR  R  N  
Sbjct: 589 GDRPILVATAVAARGLDIPNVRHVVNFD-----LPSDIEEYVHRIGRTGRVGNLG 638


>gi|118482639|gb|ABK93239.1| unknown [Populus trichocarpa]
          Length = 413

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+++ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGINVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 377 GVAINFVTRDDERMLSDIQR 396


>gi|73965223|ref|XP_861654.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 7 [Canis
           familiaris]
          Length = 552

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 243 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 292

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 293 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 352

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 353 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 387


>gi|329954895|ref|ZP_08295912.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
 gi|328526999|gb|EGF54010.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
          Length = 499

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 76/189 (40%), Gaps = 16/189 (8%)

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           LP   + + + F      +   +  S      E++       E+I++   +         
Sbjct: 241 LP--KERQTIMFSATMPAKIQQLAQSILNDPAEVKLAVSKPAEKIVQAAYVC-------- 290

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q +        A Q   R+++   +K   +++T+ L +  + V  MHS+++  +R E
Sbjct: 291 YENQ-KLGIIRSLFAEQTPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREE 349

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++ + + G+ ++LV  +++  G+DI +  LV   D             +  IGR AR  N
Sbjct: 350 VMYEFKAGRVNILVATDIVARGIDIDDIRLVINYDV-----PHDSEDYVHRIGRTARANN 404

Query: 684 SKVILYADT 692
             V L    
Sbjct: 405 DGVALTFVN 413


>gi|239944102|ref|ZP_04696039.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           15998]
          Length = 395

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 83/233 (35%), Gaps = 28/233 (12%)

Query: 492 HRKATLAE-YGFRLPSCMDNRPLRFEEWNCLR-------PTTIVVSAT-PGSWELEQCQG 542
            RK  L+   G  L    +   L F                T++ SAT PG+      + 
Sbjct: 87  QRKLDLSHIRGLVLDEADEMLDLGFLPDVERIITMLPAKRQTMLFSATMPGAVISLARRY 146

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE--------INLAAQQGLRILLTVLTKRM 594
           +     I  T   D    +++    V   ++         I  A  +GL  ++   TKR 
Sbjct: 147 MSQPTHINATSPDDEGTTVKNTVQHVYRAHNMDKPEMLARILQADGRGL-AMIFCRTKRT 205

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A D+ E L +R      +H ++    R + +R  R GK DVLV  ++   G+D+     V
Sbjct: 206 AADIAEQLEKRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHV 265

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS----IQLAID 702
               +        + + +  IGR  R     V I   D         I  A+D
Sbjct: 266 VNYQS-----PEDEKTYLHRIGRTGRAGAKGVAITLVDWDDIPRWQLINKALD 313


>gi|226365826|ref|YP_002783609.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
 gi|226244316|dbj|BAH54664.1| putative ATP-dependent RNA helicase [Rhodococcus opacus B4]
          Length = 534

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 13/189 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART----QVEDVYDEIN 576
           +  T++ SAT PG         +     IR     D  V  R+++        D  + + 
Sbjct: 224 KRQTMLFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYRAHALDKAEMVA 283

Query: 577 LAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              Q   R   ++   TKR A+ +++ L ER   V  +H ++  + R + ++  R GK D
Sbjct: 284 RVLQADGRGATMIFTRTKRTAQKVSDELAERGFAVGSVHGDLNQVAREKALKAFRSGKID 343

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           VLV  ++   G+DI +   V             + + +  IGR  R   + + +   D  
Sbjct: 344 VLVATDVAARGIDIDDVTHVINY-----QCPEDEKTYVHRIGRTGRAGRTGIAVTLVDWD 398

Query: 694 TKSIQLAID 702
                  ID
Sbjct: 399 DIPRWQLID 407


>gi|221061545|ref|XP_002262342.1| ATP-dependent RNA helicase [Plasmodium knowlesi strain H]
 gi|193811492|emb|CAQ42220.1| ATP-dependent RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 713

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G +IL+   TKR  ++L + L         +H + +  ER  I+ + R  + ++LV  +
Sbjct: 570 EGNKILIFCDTKRNCDNLCKELRYHQYNALAIHGDKEQRERDRILNNYRSDRCNILVATD 629

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +   GLDI    +V   D        +    I  IGR  R     
Sbjct: 630 VASRGLDIKNISIVVNYD-----LPNTIEDYIHRIGRTGRAGKKG 669


>gi|154315049|ref|XP_001556848.1| hypothetical protein BC1G_04866 [Botryotinia fuckeliana B05.10]
 gi|160419161|sp|A6RW79|PRP5_BOTFB RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|150848404|gb|EDN23597.1| hypothetical protein BC1G_04866 [Botryotinia fuckeliana B05.10]
          Length = 1151

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 86/216 (39%), Gaps = 25/216 (11%)

Query: 512 PLRFEEWNCLRP--TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIR 562
           P   + +N +RP   TI+ SAT P   +   ++     VE ++    +V P +    E+R
Sbjct: 723 PQVMKVFNNIRPNRQTILFSATMPRIMDALAKKTLQSPVEIVVGGRSVVAPEITQIVEVR 782

Query: 563 SARTQVEDVYDEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
             + +   + + +       +  R L+ V  +  A+DL + L  +      +H     ++
Sbjct: 783 EEKEKFHRLLELLGELYNTDEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQVD 842

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R   I D + G   +++  ++   GLD+ +  LV   DA            +   GR  R
Sbjct: 843 RDSTIDDFKAGVVPIMIATSVAARGLDVKQLKLVVNFDA-----PNHLEDYVHRAGRTGR 897

Query: 681 NVNSKVIL---------YADTITKSIQLAIDETTRR 707
             N+   +         Y+  I K+++ +  E   R
Sbjct: 898 AGNTGTAVTFITEEQEQYSVGIAKALEQSGQEVPDR 933


>gi|84994752|ref|XP_952098.1| ATP-dependent RNA helicase [Theileria annulata strain Ankara]
 gi|65302259|emb|CAI74366.1| ATP-dependent RNA helicase, putative [Theileria annulata]
          Length = 416

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 31/205 (15%)

Query: 513 LRFEEWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           L+F          I+ SAT             P + E+     + ++ I +    V+   
Sbjct: 210 LKFLPTEK---QIILYSATFPASVQAFKEQYLPNAHEINLMDDLTLKGITQFYAYVEERQ 266

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++             +    Q     ++   +    E L + + E      Y+H+++   
Sbjct: 267 KVH--------CLSTLFARLQINQ-AIIFCNSVVRVELLAKKITELGFSCFYIHAKMMQS 317

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            R  +  D R G    LV  +L   G+D     +V   D     F ++ ++ +  IGR+ 
Sbjct: 318 HRNRVFHDFRNGACRCLVSSDLFTRGIDFRFVNVVVNFD-----FPKNSSTYLHRIGRSG 372

Query: 680 RNVNSK-VILYADTITKSIQLAIDE 703
           R  +    I       K     I+E
Sbjct: 373 RFGHLGLAINLVTEQDKESLFKIEE 397


>gi|24375521|ref|NP_719564.1| ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
 gi|24350394|gb|AAN57008.1|AE015835_4 ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
          Length = 623

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 9/153 (5%)

Query: 559 VEIRSARTQVEDVYDEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           +E R  +    +  + +      +    I++ V T+    +L E L  R      +H ++
Sbjct: 219 IEQRFVQVSQHNKLEALVRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDM 278

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
               R   +  L+ GK D+L+  ++   GLD+   G V   D           + +  IG
Sbjct: 279 NQQARERAVEQLKNGKLDILIATDVAARGLDVERIGHVVNYD-----IPYDTEAYVHRIG 333

Query: 677 RAARNVNSK-VILYADTITKSIQLAIDE-TTRR 707
           R  R   +   IL+  +    +   I+  T  R
Sbjct: 334 RTGRAGRTGMAILFVTSREMRMLRTIERATNSR 366


>gi|260577582|ref|ZP_05845521.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
           43734]
 gi|258604306|gb|EEW17544.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
           43734]
          Length = 707

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 77/199 (38%), Gaps = 15/199 (7%)

Query: 523 PTTIVVSATPGSWELEQCQGIIV---EQIIRPTGLVDPPVE----IRSARTQVEDVYDEI 575
               + SAT  S      +  +    E  ++ T      +E    + S R +++ +   +
Sbjct: 249 KQVALFSATMPSGIRRLSKQYLSDPREITVKATQRTSENIEQDYLLVSHRDKLDALTRIL 308

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +   +   +++ V TK   E+L E L  R      ++ ++    R   +  L+ G+ D+
Sbjct: 309 EIT--EFEAMIMFVRTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDI 366

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLD+     V   D           S +  IGR  R       IL+     
Sbjct: 367 LVATDVAARGLDVDRITHVFNYD-----IPHDTESYVHRIGRTGRAGRKGRAILFVTPRE 421

Query: 695 KSIQLAIDETTRRREKQLE 713
           + +  +I+  T+ R  ++E
Sbjct: 422 RRLLKSIERATKSRLNEIE 440


>gi|294933328|ref|XP_002780686.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239890671|gb|EER12481.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 166

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 2/112 (1%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G ++L+   TKR A+DLT  L         +H + K  ER  ++ + + GK  +++  ++
Sbjct: 3   GSKLLIFTDTKRGADDLTRTLRMDGWPALCIHGDKKQEERDWVLHEFKSGKSPIMIATDV 62

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
              GLD+ +   V   D    G +      I   GRA    N+     AD I
Sbjct: 63  ASRGLDVKDIRHVVNYDFP--GQIEDYVHRIGRTGRAGCKGNAYTFFTADKI 112


>gi|161870238|ref|YP_001599408.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
 gi|161595791|gb|ABX73451.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
          Length = 462

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKDPEVI--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   G+D+P    V   D  K+         +  IGR  R   + + +   
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGRAGRTGIAITFA 350

Query: 692 TITKSIQ 698
            + + ++
Sbjct: 351 EVNEYVK 357


>gi|118404788|ref|NP_001072584.1| probable ATP-dependent RNA helicase ddx6 [Xenopus (Silurana)
           tropicalis]
 gi|123905703|sp|Q0IHV9|DDX6_XENTR RecName: Full=Probable ATP-dependent RNA helicase ddx6; AltName:
           Full=DEAD box protein 6
 gi|114108232|gb|AAI22945.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Xenopus (Silurana)
           tropicalis]
 gi|171847243|gb|AAI61499.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Xenopus (Silurana)
           tropicalis]
          Length = 481

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 65/181 (35%), Gaps = 15/181 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
              + S     +E+   + + ++ + +    V    ++           + +    Q   
Sbjct: 284 QKFMTSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQ 335

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
            I +   + +  E L + + +      Y+H++++   R  +  D R G    LV  +L  
Sbjct: 336 SI-IFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFT 394

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAID 702
            G+DI    +V   D  K        + +  IGR+ R  +  + +   T        +I+
Sbjct: 395 RGIDIQAVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 449

Query: 703 E 703
           E
Sbjct: 450 E 450


>gi|87310130|ref|ZP_01092262.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
 gi|87287120|gb|EAQ79022.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
          Length = 428

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 74/179 (41%), Gaps = 14/179 (7%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQII-RPTGLVDPPVEIR----SARTQVEDVYDEIN 576
            T+++SAT  P   +L Q      E++   PT +    +E R        + + + + + 
Sbjct: 181 QTLLLSATVPPTIEKLAQRYMRNPEKVDFSPTNISAETIEQRYFTVDHSKKFDMLVELL- 239

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q  + ++   TKR  E +T+ L ++   V  +H +++   R   + D +  KF VL
Sbjct: 240 -KREQPQKAIVFCRTKRGTERITQRLSKKTKLVHCIHGDMQQGARNRALSDFKASKFRVL 298

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           V  +++  G+DI +   +   D  +          +  +GR  R     +     T  +
Sbjct: 299 VATDVVGRGIDISDVSHIINYDIPEF-----SDDYVHRVGRTGRMGKEGIAYTFVTPEE 352


>gi|322799058|gb|EFZ20513.1| hypothetical protein SINV_09810 [Solenopsis invicta]
          Length = 710

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 66/185 (35%), Gaps = 16/185 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV-----DPPVEIRSARTQVED---VYDEI 575
             ++ SAT  +   E     +   +    G+V     D       A  Q +    + + I
Sbjct: 458 QMLMFSATFPNDIQELAGRFLRNYLFLAVGIVGGACADVEQIFYQASGQPDKRKLLKELI 517

Query: 576 NLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
               Q G     L+ V  KR  + +  +L E N     +H +    ER E + D + GK 
Sbjct: 518 EKQNQLGSIEGTLVFVAQKRHTDFIAAFLSENNYPTTSIHGDRLQREREEALSDFKKGKM 577

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADT 692
            +LV   +   GLDI     V   D       ++    +  IGR  R  N  K   + D 
Sbjct: 578 SILVATAVAARGLDIKNVSHVINFD-----LPQTIDEYVHRIGRTGRVGNRGKATSFFDP 632

Query: 693 ITKSI 697
            + + 
Sbjct: 633 NSDTA 637


>gi|254563310|ref|YP_003070405.1| RNA helicase [Methylobacterium extorquens DM4]
 gi|254270588|emb|CAX26591.1| RNA helicase [Methylobacterium extorquens DM4]
          Length = 517

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 64/190 (33%), Gaps = 18/190 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-----QIIRPTGLVDPPVEIRSARTQVE-----DVYD 573
            T+  SAT    E+E+   + +      ++ RP       +E R   T  E      V  
Sbjct: 179 QTLFFSAT-MPPEIERLADMFLHNPQRVEVARPASTATT-IEQRLVATGAEGHEKRKVLR 236

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +  +A +    ++    KR    L   L         +H ++    R+  +   R G+ 
Sbjct: 237 HLIRSASELQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEV 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
            +LV  ++   GLDIP    V   D             +  IGR  R   S      A  
Sbjct: 297 PLLVASDVAARGLDIPAVSHVFNFDV-----PHHPEDYVHRIGRTGRAGRSGQAFTLASR 351

Query: 693 ITKSIQLAID 702
             +    AI+
Sbjct: 352 SDERSLSAIE 361


>gi|209762794|gb|ACI79709.1| ATP-dependent RNA helicase [Escherichia coli]
          Length = 444

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 91/253 (35%), Gaps = 17/253 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT  G    +  + ++ + + +          +I     + +D+  +  L  
Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DIP+   V   D  + G      + +  IGR AR       +      
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSG-----DTYLHRIGRTARAGRKGTAISLVEAH 355

Query: 695 KSIQLA-----IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
             + L      I+E  + R       K    + +   +   +V+     +  A       
Sbjct: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415

Query: 750 AQQLSLSKKKGKA 762
            ++   + K    
Sbjct: 416 VKKRHRNTKNIGK 428


>gi|218532241|ref|YP_002423057.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218524544|gb|ACK85129.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 519

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 64/190 (33%), Gaps = 18/190 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-----QIIRPTGLVDPPVEIRSARTQVE-----DVYD 573
            T+  SAT    E+E+   + +      ++ RP       +E R   T  E      V  
Sbjct: 179 QTLFFSAT-MPPEIERLADMFLHNPQRVEVARPASTATT-IEQRLVATGAEGHEKRKVLR 236

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +  +A +    ++    KR    L   L         +H ++    R+  +   R G+ 
Sbjct: 237 HLIRSASELQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEV 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
            +LV  ++   GLDIP    V   D             +  IGR  R   S      A  
Sbjct: 297 PLLVASDVAARGLDIPAVSHVFNFDV-----PHHPEDYVHRIGRTGRAGRSGQAFTLASR 351

Query: 693 ITKSIQLAID 702
             +    AI+
Sbjct: 352 SDERSLSAIE 361


>gi|146417127|ref|XP_001484533.1| hypothetical protein PGUG_03914 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 705

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 96/265 (36%), Gaps = 32/265 (12%)

Query: 520 CLRPTTIVVSAT---PGSWELEQCQGIIVEQIIRP-----TGLVDPPVEIRSARTQVEDV 571
             +  T++ SAT        ++      V  ++ P     + LV   V IR        +
Sbjct: 375 KHKRQTMLFSATMNTKIQDLIQLSLDKPVRIMVNPPKQAASKLVQEFVRIRKREHLKPAL 434

Query: 572 YDEINLAA--QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
              +      QQ  RI++ V  K MA  L   L    ++V  +H  +   +R++ ++D R
Sbjct: 435 LYHLLRLVDPQQQNRIVVFVSRKEMAHRLRIVLGLLGMKVLELHGSLTQEQRLQSVKDFR 494

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
                VL+  +L   GLDIP+  +V   D  K     +    +  +GR AR       I 
Sbjct: 495 SLAVPVLICTDLAARGLDIPKIEIVINFDMPK-----THEIYLHRVGRTARAGREGRSIT 549

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED-AATTNIS 747
           +     +   +  D        +    +K+        + +   +D   +E+  +     
Sbjct: 550 FVGESNQDRSIVKD------AIKSLEEQKNG-------KAVSRTVDWKKVEELNSIVESK 596

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMH 772
            D     L ++K    +  L+ +M 
Sbjct: 597 KDTIDEVLEEEKLAKEI--LQAEMQ 619


>gi|145323964|ref|NP_001077571.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|332191920|gb|AEE30041.1| DEAD-box ATP-dependent RNA helicase 42 [Arabidopsis thaliana]
          Length = 828

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 69/180 (38%), Gaps = 13/180 (7%)

Query: 524 TTIVVSAT-PGSWE--LEQCQGIIVEQIIRPTGLVDP----PVEIRSARTQVEDVYDEIN 576
            T++ SAT P   E    +     VE  +    +V+      VE+R    +   + + + 
Sbjct: 374 QTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 433

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +++G +IL+ V ++   + L   + + +     +H      +R   I D +    ++L
Sbjct: 434 EWSEKG-KILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLL 492

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ E  LV   DA            +  +GR  R       +   +   +
Sbjct: 493 IATSVAARGLDVKELELVVNFDA-----PNHYEDYVHRVGRTGRAGRKGCAVTFISEDDA 547


>gi|119178046|ref|XP_001240731.1| conserved hypothetical protein [Coccidioides immitis RS]
 gi|118575172|sp|Q1DP69|DBP2_COCIM RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 542

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 72/184 (39%), Gaps = 14/184 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T + SAT      +     + + I    G  D          VEI S   + + + + +
Sbjct: 305 QTCMWSATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMINHL 364

Query: 576 NLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  +IL+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  
Sbjct: 365 ERIMDDKKSKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSP 424

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           ++V  ++   G+D+ +   V   D     +  +    +  IGR  R       +   T  
Sbjct: 425 IMVATDVASRGIDVRDITHVLNYD-----YPNNSEDYVHRIGRTGRAGAKGTAITLFTTD 479

Query: 695 KSIQ 698
            + Q
Sbjct: 480 NAKQ 483


>gi|74693276|sp|Q755W0|FAL1_ASHGO RecName: Full=ATP-dependent RNA helicase FAL1
          Length = 398

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 11/134 (8%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + L+  L + N  V  +H ++K  +R +++ D R
Sbjct: 257 DLYDSLTIT-----QCVIFCNTKKKVDWLSHKLIQNNFAVASIHGDMKQDDRDKVMSDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G   VL+  ++   G+D+ +  LV   D           + I  IGR+ R     V I 
Sbjct: 312 SGSSRVLISTDVWARGIDVQQVSLVINYD-----LPELLENYIHRIGRSGRFGRKGVAIN 366

Query: 689 YADTITKSIQLAID 702
           +      +   +I+
Sbjct: 367 FITREEVTKLKSIE 380


>gi|291221307|ref|XP_002730663.1| PREDICTED: RNA helicase p47-like [Saccoglossus kowalevskii]
          Length = 454

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 82/254 (32%), Gaps = 35/254 (13%)

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           + L +DE+   + Q         +       +   LP   D + + F     L     + 
Sbjct: 208 AFLCLDEADKLLSQ------DFKNMLDRCINF---LP--NDRQIMLFSATFPLSVQEFMT 256

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
                 +E+     + ++ I +    V    ++           + +    Q    I + 
Sbjct: 257 RHLNKPYEINLMDELTLKGITQYYAFVQEKQKVH--------CLNTLFSKLQINQSI-IF 307

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
             + +  E L   + E      Y+H++++   R  I  D R G    LV  +L   G+DI
Sbjct: 308 CNSTQRVELLARKITELGYSCFYIHAKMRQEHRNRIFHDFRNGACRNLVCSDLFTRGIDI 367

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRR 708
               +V   D     F +   + +  IGR+ R  +  + L   T             R  
Sbjct: 368 QAVNVVINFD-----FPKHAETYLHRIGRSGRYGHLGIALNLITYED----------RFS 412

Query: 709 EKQLEHNKKHNINP 722
             Q+E      I P
Sbjct: 413 LYQIERELGTEIKP 426


>gi|226294425|gb|EEH49845.1| ATP-dependent RNA helicase DHH1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 577

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 35/226 (15%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 277 SFHPKDRQIMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVH- 335

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+++    R  
Sbjct: 336 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNR 387

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 388 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 442

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +          L   E     E Q          PQS+ +K+
Sbjct: 443 LGLAINLINWEDRYNLYKIEQELGTEIQ--------PIPQSIDKKL 480


>gi|268592936|ref|ZP_06127157.1| ATP-dependent RNA helicase RhlB [Providencia rettgeri DSM 1131]
 gi|291311728|gb|EFE52181.1| ATP-dependent RNA helicase RhlB [Providencia rettgeri DSM 1131]
          Length = 428

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 114/360 (31%), Gaps = 66/360 (18%)

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE---ELKMRLIELEKEGRLLEAQRLE 423
           TG+ +  + +   Y  +H        N     I     EL +++        L E   L+
Sbjct: 57  TGKTLAFLTSTFHYLLTHPAIEGKKANQPRALIMAPTRELAVQI--YSDAKELAEYTGLK 114

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
             + Y  +  +     + ++N    L G         L +Y          + HV +  +
Sbjct: 115 MGLAYGGDGYDE--QLKVLQNGVDILIGTTGR-----LIDY--------AKQGHVDLSAV 159

Query: 484 SGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEE----------WNCLRPT 524
             +   +  R   L   GF         R+P   +   L F            +  +   
Sbjct: 160 QVVVLDEADRMYDL---GFIKDIRWIFRRMPGAAERLNLLFSATLSYRVRELAFEQM-NN 215

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
              V   P    L++    I E++  P+      +        ++ + +E         R
Sbjct: 216 PEYVEVEP----LQKTGHRIKEELFYPSNEEKMRL--------LQTLLEEEWP-----ER 258

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TK   +D+  +L     RV  +  +V   +R+ I+     G  D+LV  ++   
Sbjct: 259 CIIFANTKHRCDDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGHLDILVATDVAAR 318

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GL IP    V   D             +  IGR  R   S   I  A         AI+E
Sbjct: 319 GLHIPSVTHVFNYD-----LPDDCEDYVHRIGRTGRAGESGNSISLACEEYSLNLPAIEE 373


>gi|225685109|gb|EEH23393.1| ATP-dependent RNA helicase dhh1 [Paracoccidioides brasiliensis
           Pb03]
          Length = 515

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 35/226 (15%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 215 SFHPKDRQIMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVH- 273

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+++    R  
Sbjct: 274 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNR 325

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 326 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 380

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +          L   E     E Q          PQS+ +K+
Sbjct: 381 LGLAINLINWEDRYNLYKIEQELGTEIQ--------PIPQSIDKKL 418


>gi|197104230|ref|YP_002129607.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
 gi|196477650|gb|ACG77178.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
          Length = 470

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 96/267 (35%), Gaps = 45/267 (16%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ E S++           + G+          + + GF +P        R  
Sbjct: 132 TPGRLIDHLQEKSVV-----------LEGVETFVLDEADQMLDMGFIVPIR------RIV 174

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           ++   R   +  SAT    E+E+  G    +I+ P  L    V +    T VE +   + 
Sbjct: 175 KFLPKRRQNLFFSAT-MPAEIEKLTG----EILNPNPL---KVTVTPPSTTVERINQRVL 226

Query: 577 LAAQQGLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
              QQ  R              +++   TKR A+ +   L +  +    +H +    +R 
Sbjct: 227 FVEQQRKRALLAELFDDASFKRVIVFTRTKRGADRVARGLEQVGVEAASIHGDKSQGQRE 286

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             +   + G    LV  ++   G+DI     V   +           + +  IGR AR  
Sbjct: 287 RALAAFKAGDVRALVATDIAARGIDIDAVSHVVQFE-----LPNVPEAYVHRIGRTARAG 341

Query: 683 -NSKVILYADTITKSIQLAIDETTRRR 708
            +   + +     +++   I++ T++R
Sbjct: 342 ADGSAVAFCADDERNLLKDIEKVTKQR 368


>gi|47121785|gb|AAT11555.1| vasa-like protein [Copidosoma floridanum]
 gi|47175561|gb|AAT12450.1| vasa protein [Copidosoma floridanum]
          Length = 708

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 70/186 (37%), Gaps = 16/186 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV--------DPPVEIRSARTQVEDVYDEI 575
            T++ SAT      E     +   I    G+V           +E++ +  + +      
Sbjct: 470 QTLMFSATFPRDIQELAVKFLNNYIFVAVGIVGSACSDIEQSFLEVKKSDKRSKLKEILE 529

Query: 576 NLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                  L+ IL+ V  KR A+ +  +L + N     +H +    ER E + D + G+  
Sbjct: 530 EERNNDTLKGILVFVDQKRTADFIAAFLSDNNFPTTSIHGDRLQREREEALNDFKSGRMC 589

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADT 692
           +LV   +   GLDI     V   D  KE         I  IGR  R  N    V  Y ++
Sbjct: 590 ILVATAVAARGLDIKNVRFVINFDLPKE-----IDEYIHRIGRTGRVGNKGKAVSFYDES 644

Query: 693 ITKSIQ 698
           I   IQ
Sbjct: 645 IDNRIQ 650


>gi|118351203|ref|XP_001008880.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89290647|gb|EAR88635.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 643

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 111/295 (37%), Gaps = 25/295 (8%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
           F     L + GF   +   N              T++ SAT  S E+ +   I + + IR
Sbjct: 341 FDEADKLLDLGFE--AAAQNIVENC----NRERQTLLFSATLTS-EVNKLIDIALRKPIR 393

Query: 551 ----PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL---RILLTVLTKRMAEDLTEYLY 603
               P G  +  +  +  R Q ED  +   LA        R ++   TKR    +     
Sbjct: 394 IQANPDGQTNDKLIQKMLRIQHEDFREAALLAIAAKYYKERTIIFFKTKRQTHRMAIIFG 453

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
              ++V  +H ++   +RI+   D + GK+  L+  +L   GLDI     V   +   E 
Sbjct: 454 LFGLKVCELHGDLTQNQRIQAFSDFKEGKYQYLMATDLASRGLDIQGVKAVINFELPSEV 513

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYA--DTITKSIQLAIDETTRRREKQLEHNKKHNIN 721
                T  I  +GR AR  N  + L    D   K+++  + E    ++K +E        
Sbjct: 514 -----TRYIHRVGRTARAGNEGISLTIGLDAELKTLKKMLKEN---KDKMMEKVSLSVET 565

Query: 722 PQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
            Q  KEKI  V +  +++           ++  +  +K +  +K   + M+    
Sbjct: 566 LQKYKEKIQNV-EREVVKVLEEEQAERQLRKAEMELQKAENMIKHKDEIMNKPKK 619


>gi|57867605|ref|YP_189253.1| DEAD-box ATP dependent DNA helicase [Staphylococcus epidermidis
           RP62A]
 gi|293366046|ref|ZP_06612734.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81673916|sp|Q5HME0|Y1688_STAEQ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SERP1688
 gi|57638263|gb|AAW55051.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           epidermidis RP62A]
 gi|291319769|gb|EFE60127.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726161|gb|EGG62633.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU144]
 gi|329734135|gb|EGG70453.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU045]
          Length = 509

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 78/196 (39%), Gaps = 17/196 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPTG------LVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      EL Q Q +   +II+          +D    I     + +   + +
Sbjct: 177 QTMLFSATMPKAIQELVQ-QFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFL 235

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +    Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+
Sbjct: 236 D--VHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLDI     V   D       +   S    IGR  R     + + + + I 
Sbjct: 294 LVATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIE 348

Query: 695 KSIQLAIDETTRRREK 710
                 I++   RR K
Sbjct: 349 MDYIRQIEDVNNRRMK 364


>gi|14042692|dbj|BAB55355.1| unnamed protein product [Homo sapiens]
          Length = 622

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 348 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 401

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 402 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 460

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 461 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 515

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 516 YVHRIGRTGRSGNTGIATTF------INKACDES 543


>gi|322695045|gb|EFY86860.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Metarhizium
           acridum CQMa 102]
          Length = 1161

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 83/212 (39%), Gaps = 23/212 (10%)

Query: 512 PLRFEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPT--------GLVDPPVEI 561
           P   + +  +RP   TI+ SAT     ++     +++  +  T          ++  VE+
Sbjct: 703 PQVMKIFAGMRPDKQTILFSAT-MPRIIDSLTKKVLKSPVEITVGGRSVVAKEIEQIVEV 761

Query: 562 RSARTQVEDVYDEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           R   T+   V + +     +    R L+ V  +  A+DL + L  +      +H     +
Sbjct: 762 REESTKFFRVLELLGELYDRDEDARALIFVDRQEKADDLLKELMVKGYPCMSIHGGKDQV 821

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R   I D + G   +LV  ++   GLD+ +  LV   DA            +   GR  
Sbjct: 822 DRDSTISDFKKGVVPLLVATSVAARGLDVKQLKLVINYDA-----PNHLEDYVHRAGRTG 876

Query: 680 RNVNSKVILYADTITKS-----IQLAIDETTR 706
           R  N+ V +   T  +      I  A++++ +
Sbjct: 877 RAGNTGVAVTFVTPDQENCAPGIAKALEQSEQ 908


>gi|320034926|gb|EFW16869.1| ATP-dependent RNA helicase dhh1 [Coccidioides posadasii str.
           Silveira]
          Length = 512

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 75/234 (32%), Gaps = 32/234 (13%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 215 SFHPKDRQVMLFSATFPMIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEERQKVH- 273

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 274 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQQNRNR 325

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 326 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 380

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQ-----LEHNKKHNINPQSVKEKIMEV 732
             + +          L   E     E Q     ++        P+++   I   
Sbjct: 381 LGLAINLINWDDRYNLYKIEQELGTEIQPIPPSIDKKLYVYDTPETIPRPIANA 434


>gi|297571784|ref|YP_003697558.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932131|gb|ADH92939.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 520

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 72/189 (38%), Gaps = 16/189 (8%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--------DVYDE 574
            T++ SAT PG       + +     IR     D    ++S R  V         +V   
Sbjct: 222 HTMLFSATMPGPVIAMARRYMSHATHIRAQAHDDESTTVQSVRQVVYRAHALNKIEVLAR 281

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I  A  +GL  ++   TKR A  + E L  R      +H ++    R + +R  R GK D
Sbjct: 282 ILQARGRGL-TIIFTRTKRTAARVAEDLAARGFATGALHGDLGQGAREQALRAFRHGKID 340

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           VLV  ++   G+D+     V    A        + + +  IGR  R  +S   I + D  
Sbjct: 341 VLVATDVAARGIDVDNVTHVINYQA-----PEDEKTYVHRIGRTGRAGHSGTAITFVDWE 395

Query: 694 TKSIQLAID 702
                  I+
Sbjct: 396 DTPKWAVIN 404


>gi|303315651|ref|XP_003067830.1| ATP-dependent RNA helicase DBP2, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240107506|gb|EER25685.1| ATP-dependent RNA helicase DBP2, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320034056|gb|EFW16002.1| ATP-dependent RNA helicase DBP2 [Coccidioides posadasii str.
           Silveira]
          Length = 545

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 72/184 (39%), Gaps = 14/184 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T + SAT      +     + + I    G  D          VEI S   + + + + +
Sbjct: 308 QTCMWSATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMINHL 367

Query: 576 NLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  +IL+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  
Sbjct: 368 ERIMDDKKSKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSP 427

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           ++V  ++   G+D+ +   V   D     +  +    +  IGR  R       +   T  
Sbjct: 428 IMVATDVASRGIDVRDITHVLNYD-----YPNNSEDYVHRIGRTGRAGAKGTAITLFTTD 482

Query: 695 KSIQ 698
            + Q
Sbjct: 483 NAKQ 486


>gi|261188573|ref|XP_002620701.1| ATP-dependent RNA helicase DHH1 [Ajellomyces dermatitidis SLH14081]
 gi|239593185|gb|EEQ75766.1| ATP-dependent RNA helicase DHH1 [Ajellomyces dermatitidis SLH14081]
 gi|239613245|gb|EEQ90232.1| ATP-dependent RNA helicase DHH1 [Ajellomyces dermatitidis ER-3]
 gi|327357431|gb|EGE86288.1| ATP-dependent RNA helicase DHH1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 507

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 35/226 (15%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 214 SFHPKDRQVMLFSATFPMIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVH- 272

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+++    R  
Sbjct: 273 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNR 324

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 325 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 379

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +          L   E     E Q          PQS+ +K+
Sbjct: 380 LGLAINLINWEDRYNLYKIEQELGTEIQ--------PIPQSIDKKL 417


>gi|226307581|ref|YP_002767541.1| ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis PR4]
 gi|229493790|ref|ZP_04387568.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
 gi|226186698|dbj|BAH34802.1| probable ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis
           PR4]
 gi|229319289|gb|EEN85132.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
          Length = 591

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 11/226 (4%)

Query: 523 PTTIVVSAT-PGS--WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
               + SAT PGS     +Q     VE  ++        +  R  +   +   D +    
Sbjct: 186 KQVALFSATMPGSIRRISKQYLNNPVEITVKSKTSTASNITQRYIQVAHQRKLDALTRVL 245

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +    +++ V TK+  EDL E L  R      ++ ++   +R   I  L+ G  D+LV
Sbjct: 246 EVEAFEAMIIFVRTKQATEDLAEKLRARGHSAAAINGDIVQAQRERTIGQLKNGALDILV 305

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLD+     V   D           S +  IGR  R       +L+     + 
Sbjct: 306 ATDVAARGLDVDRISHVVNYD-----IPHDTESYVHRIGRTGRAGRQGDALLFVAPRERH 360

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           +  +I++ TR+   +++     ++N Q V +    + + +  E+ A
Sbjct: 361 LLKSIEKATRQPLAEMQLPSVDDVNAQRVAKFGDSITESLASENLA 406


>gi|224128550|ref|XP_002329031.1| predicted protein [Populus trichocarpa]
 gi|118482674|gb|ABK93256.1| unknown [Populus trichocarpa]
 gi|222839702|gb|EEE78025.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 79/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +  +    +   I
Sbjct: 377 GVAINFVTSDDDRMLFDI 394


>gi|144901078|emb|CAM77942.1| ATP-dependent RNA helicase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 570

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 63/188 (33%), Gaps = 11/188 (5%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVE--DVYDEINL 577
               T+  SAT G    +     ++  + I  +      V +      V+  D  + +  
Sbjct: 183 KMRQTLFFSATLGPEIRKLADEFLMNPKEISVSAQSSTAVTVEQFLAVVDHIDKRETLRH 242

Query: 578 --AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +      +    KR  + L + L +    V  MH ++    R+E +   + G+  +
Sbjct: 243 IIRIENLKNAFIFCNRKRDVDILFKSLKKHGFDVVQMHGDMSQPARLESLAKFKSGEARL 302

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTIT 694
           LV  +++  G+DI     V   D             +  IGR  R   + K    A    
Sbjct: 303 LVCSDVVARGIDIKAVSHVFNFDVPI-----HAEDYVHRIGRTGRAGETGKAFTIASPED 357

Query: 695 KSIQLAID 702
                AI+
Sbjct: 358 GRFVAAIE 365


>gi|146092052|ref|XP_001470194.1| DEAD box RNA helicase [Leishmania infantum]
 gi|134084988|emb|CAM69387.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
 gi|322500494|emb|CBZ35571.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 389

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 67/180 (37%), Gaps = 15/180 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE--------QIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             I+VSAT  +  LE  +  + E          I    +    V +   + + + + +  
Sbjct: 191 QIILVSATLPADVLEMTEKFMTEPASILVKRDEITVDSVKQYFVSVDEEKNKFDVLMELY 250

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +         ++   T++  E L + +      V  MH ++   ER EI+R  R G   V
Sbjct: 251 DSLTIAH--AVVFCNTRKKVEQLAKKMTREKFAVTAMHGDMPQAERDEIMRQFRNGHSRV 308

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  +L   G+D+    LV   D        ++   I  IGR  R   + + +      +
Sbjct: 309 LITTDLWARGIDVERVSLVLSYD-----LPLAREQYIHRIGRTGRMGRTGLAITFVRHDE 363


>gi|58271012|ref|XP_572662.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57228921|gb|AAW45355.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 577

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 65/193 (33%), Gaps = 13/193 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIR----SARTQVEDVYDEIN 576
             ++ SAT      E       E     +R   +    +        +  Q  +    + 
Sbjct: 355 QNVLFSATFNDDVQEFADRFAPEANKIFLRKEDITVDAIRQLYLECDSEDQKYEALSALY 414

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G  I +    K  A+ + E L      V  +H +  + ER  I+   R G+  VL
Sbjct: 415 DCLVIGQSI-VFCKRKVTADHIAERLISEGHAVASLHGDKLSQERDAILDGFRNGETKVL 473

Query: 637 VGINLLREGLDIPECGLVAILDADKEGF---LRSKTSLIQTIGRAARNVN--SKVILYAD 691
           +  N++  G+DIP   +V   D    G         + I  IGR  R       VI   D
Sbjct: 474 ITTNVIARGIDIPAVNMVVNYDVPDLGPGGNGPDIETYIHRIGRTGRFGRKGCSVIFTHD 533

Query: 692 TITKSIQLAIDET 704
             +KS    I  T
Sbjct: 534 YRSKSDVERIMNT 546


>gi|89094340|ref|ZP_01167281.1| ATP-dependent RNA helicase, DEAD box family protein
           [Oceanospirillum sp. MED92]
 gi|89081399|gb|EAR60630.1| ATP-dependent RNA helicase, DEAD box family protein
           [Oceanospirillum sp. MED92]
          Length = 412

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 93/254 (36%), Gaps = 27/254 (10%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D        +  +    F     + + GFR    +     +  +        ++ SAT
Sbjct: 137 LLDLCKKKAANLREIEFLIFDEADRMLDMGFR--DEIKAVISKLPKREQKARQVMLFSAT 194

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVEDVYDEINLAAQ---------- 580
                 +  + +    +++P  +    V+ R S+   V+ +    + A +          
Sbjct: 195 LNDRIFKFSKNL----LLKPQVI---EVDQRGSSADNVDQIIYNCDPARKYEITSYLIKN 247

Query: 581 QGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +G  ++++   TK+ A+ L +YL E+ +    +H++    +R + +   +  K  VLV  
Sbjct: 248 RGWAQVMVFSQTKQGADKLQQYLSEQGLETDVIHADRTQKQREDALSQFKSQKLKVLVAT 307

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQ 698
           ++   G+DI E   V  L+   +         I  IGR  R  +  V I         + 
Sbjct: 308 DVAARGIDIAELPAVINLEMPFK-----AEDYIHRIGRTGRAGSQGVAISLLIEEENYLL 362

Query: 699 LAIDETTRRREKQL 712
            AI+     R  Q 
Sbjct: 363 EAIEALIDERLPQQ 376


>gi|291446333|ref|ZP_06585723.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291349280|gb|EFE76184.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 507

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 17/157 (10%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q  D Y      A +  R+++ + TK   + LT++L    +R   +H      +R   + 
Sbjct: 357 QGADKYATTTEIAARDGRVIMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLD 416

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             + G+  VLV  N+   G+ +    LV  +D             +   GR AR   S  
Sbjct: 417 RFKTGQVTVLVATNVAARGIHVDNLDLVVNVDP-----PTDHKDYLHRGGRTARAGESGS 471

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           ++                 +RRE          I PQ
Sbjct: 472 VVTLVLP-----------NQRREMTRLM-ADAGITPQ 496


>gi|295674161|ref|XP_002797626.1| GPI inositol-deacylase [Paracoccidioides brasiliensis Pb01]
 gi|226280276|gb|EEH35842.1| GPI inositol-deacylase [Paracoccidioides brasiliensis Pb01]
          Length = 1440

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 6/138 (4%)

Query: 568 VEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           V D+     L+     +  L+  +     + LT+      I  RY+ S+ +   R E + 
Sbjct: 204 VNDITVRAWLSRASDRKSTLVFGVDIDHVKCLTDTFRRFGIDARYITSQTRKNLRTEELE 263

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R  ++ VLV   L  EG DIP    V +    +     SK  LIQ IGR  R    K 
Sbjct: 264 AFRNQEYPVLVNCGLFTEGTDIPNIDCVLLARPTR-----SKNLLIQMIGRGLRLHPGKE 318

Query: 687 ILYADTITKSIQLAIDET 704
             +   +  S+   +  T
Sbjct: 319 NCHIIDMVASLNTGVTTT 336


>gi|168333928|ref|ZP_02692160.1| ATP-dependent RNA helicase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 472

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 100/292 (34%), Gaps = 50/292 (17%)

Query: 496 TLAEYGFR------LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
            +   GFR      L S  +NR              ++ SAT     +E         + 
Sbjct: 82  EMLNMGFREDIDTILESIPENR------------QFLLFSATLPKAIMEIANKYQTNAV- 128

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDE------INLAAQQGLR-ILLTVLTKRMAEDLTEYL 602
                    V +++      DV ++        L      + +L+   TK+  +DL + L
Sbjct: 129 -KINTTKKQVTVKTISQHYLDVNEKKKSEVLARLIDSNNFKLMLVFCNTKKRVDDLCKDL 187

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
             R  +   +H ++K + R  ++   R G  D+L+  ++   G+DI +   V   D    
Sbjct: 188 MSRGYKAEALHGDMKQIHRDSVMNKFRRGIVDILIATDVAARGIDIDDVDAVFNYD---- 243

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
                    +  IGR  R  N K   Y+    K I            +Q+E      I  
Sbjct: 244 -LPIDDEYYVHRIGRTGR-ANRKGTSYSFVCGKEIYK---------LRQIERYTNSKITK 292

Query: 723 QSV-------KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSL 767
            ++         K+  ++D I  E+     I+ +   ++   ++  A  + L
Sbjct: 293 ITIPTMDDIKGNKVNSILDEIK-EEIKEGKITTNLAFITQIAQELNAECEEL 343


>gi|146293591|ref|YP_001184015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145565281|gb|ABP76216.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 427

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 107/317 (33%), Gaps = 49/317 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L + +  +++         + ++S +   +  R  +L   GF   L   +D  P++
Sbjct: 142 TPGRLLDLLSSNAI--------KLNRVSALVLDEADRMLSL---GFTEELAQVLDALPVK 190

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT--GLVDPPVEIRSARTQVEDVY 572
                     T++ SAT    E+ +    ++   +        +  +  R          
Sbjct: 191 --------KQTLLFSAT-FPEEVRELTAKLLNNPLEYQLQSEQESTIHQRVITVNRPMKT 241

Query: 573 DEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             +    ++    + L+ V  K     L + L +R I     H +     R  ++   + 
Sbjct: 242 ALLAHLIKEHQWSQALIFVSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKN 301

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+  VL+  ++   G+DI +  +V   D       RS    +  IGR+ R   + + +  
Sbjct: 302 GEISVLIATDIAARGIDIDKLPVVINFD-----LPRSPADYMHRIGRSGRAGEAGLAVTL 356

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
            +        + E         + NK          + + E I     +D     +   A
Sbjct: 357 ISHEDYHHFGVIE---------KKNK---------LKLVREQIVGFEADDDMPAELLEQA 398

Query: 751 QQLSLSKKKGKAHLKSL 767
           + ++  +  GK   K L
Sbjct: 399 KPVAKPEGTGKKKRKQL 415


>gi|126175951|ref|YP_001052100.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|152999102|ref|YP_001364783.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|217971789|ref|YP_002356540.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|125999156|gb|ABN63231.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|151363720|gb|ABS06720.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|217496924|gb|ACK45117.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 640

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 72/196 (36%), Gaps = 23/196 (11%)

Query: 531 TPGSWELEQCQGIIVEQIIR-PTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQG----- 582
           TP   +L      + EQI R     +  PV +R   +Q  VE +       +Q       
Sbjct: 176 TPSERQLALFSATMPEQIKRVANQHLRNPVHVRIESSQTTVESIEQRFVQVSQHNKLEAL 235

Query: 583 ---------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                      +++ V T+    +L E L  R      +H ++    R   +  L+ GK 
Sbjct: 236 VRVLEVENTEGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKL 295

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
           D+L+  ++   GLD+   G V   D           + +  IGR  R   +   IL+  +
Sbjct: 296 DILIATDVAARGLDVERIGHVVNYD-----IPYDAEAYVHRIGRTGRAGRTGMAILFVTS 350

Query: 693 ITKSIQLAIDETTRRR 708
               +   I+ +T  R
Sbjct: 351 REMRMLRTIERSTNSR 366


>gi|333000436|gb|EGK20018.1| ATP-dependent RNA helicase srmB [Shigella flexneri VA-6]
          Length = 444

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 90/253 (35%), Gaps = 17/253 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT  G    +  + ++ + + +          +I     + +D+  +  L  
Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DIP+   V   D  + G      + +  IGR AR       +      
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSG-----DTYLHRIGRTARAGRKGTAISLVEAH 355

Query: 695 KSIQLA-----IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
             + L      I+E  + R       K    + +   +   +V+     +  A       
Sbjct: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415

Query: 750 AQQLSLSKKKGKA 762
            ++     K    
Sbjct: 416 VKKRHRDTKNIGK 428


>gi|157863878|ref|XP_001687490.1| nucleolar RNA helicase II [Leishmania major strain Friedlin]
 gi|68223701|emb|CAJ01930.1| putative nucleolar RNA helicase II [Leishmania major strain
           Friedlin]
          Length = 674

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 89/251 (35%), Gaps = 23/251 (9%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG--LVDPPVEIRSARTQVE------D 570
                 T++ SAT   W          ++ I   G   V     I+  R +         
Sbjct: 270 ERPAHQTLLFSATVPEWVHTCSFIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEISSM 329

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D I + +    R L+   TK+   DL+  +    +  + +H +++  +R   ++  R 
Sbjct: 330 LADLIKVYSGAHGRTLVFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKSFRD 387

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            KF VL+  ++   GLD+P   LV       +       + I   GR  R     V +  
Sbjct: 388 NKFSVLIATDVAARGLDLPMVDLVIQCAPPSD-----IDAFIHRAGRTGRAGRKGVCVLL 442

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
               +  +  ++   R  + + +      + P   +E+I++ +     ED A        
Sbjct: 443 YQPRE--EYVVERIERHAKMKFD------VLPAPTREEILKAVARDAAEDLARVERRATD 494

Query: 751 QQLSLSKKKGK 761
             +  + +  K
Sbjct: 495 LFMEQAAELLK 505


>gi|328876634|gb|EGG24997.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 806

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 83/255 (32%), Gaps = 34/255 (13%)

Query: 457 PPPTLFEYIPED-------SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
            P  L +++          + L +DE+   +         D  RK      G   P   D
Sbjct: 532 TPGRLIDFLERGGTNLRRVTYLVLDEADRMLDMG----FEDQIRKI----LGQIRP---D 580

Query: 510 NRPLRFEEWNCLRPTTIVVSA--TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
            + L F         ++       P   ++   +     ++ +   + +        +T+
Sbjct: 581 KQTLMFSATWPKSVQSLAADFLVDPIQVKIGSAELSANHKVTQHIEICEKM----DKQTK 636

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +      I    + G + ++ + TK     L   +     +   +H +    ER   +  
Sbjct: 637 LFQYLKSI----EPGAKCIIFLETKSGVGMLARNMSYAGFKCEAIHGDKTQGERDFALSQ 692

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + GK   L+  ++   GLD+ +   V   D     F  +  S I  IGR  R   +   
Sbjct: 693 FKDGKIQCLIATDVASRGLDVKDIKYVINYD-----FPNTIESYIHRIGRTGRAGATGTA 747

Query: 688 LYADTITKSIQLAID 702
            Y       ++LA D
Sbjct: 748 -YTLFTLDDMRLASD 761


>gi|322516252|ref|ZP_08069184.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC
           49124]
 gi|322125316|gb|EFX96681.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC
           49124]
          Length = 528

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 99/261 (37%), Gaps = 23/261 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
            T++ SAT     +++     ++      I+   L +  V+    R + ++ +D +    
Sbjct: 176 QTLLFSAT-MPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLM 234

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ +IRD +  + D+LV
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   S   +      +  
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMG 349

Query: 698 QLAIDET-TRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
            L+I E  T++R K       Q     K  +  + ++    +  D  +  +         
Sbjct: 350 YLSIIENLTKKRMKGLKPPTAQEAFQAKKKVALKKIER---DFADEAIRSNFDKFKGDAV 406

Query: 750 AQQLSLSKKKGKAHLKSLRKQ 770
                 + ++   ++ SL  Q
Sbjct: 407 KLAQEFTPEELALYILSLTVQ 427


>gi|75076425|sp|Q4R6M5|DDX5_MACFA RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|67969804|dbj|BAE01250.1| unnamed protein product [Macaca fascicularis]
          Length = 614

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 23/188 (12%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 354

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 414

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
             D     +  S    I  IGR AR+  +       T   +I+   D         +   
Sbjct: 415 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPN-NIKQVSD------LISVLRE 462

Query: 716 KKHNINPQ 723
               INP+
Sbjct: 463 ANQAINPK 470


>gi|68536452|ref|YP_251157.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
 gi|68264051|emb|CAI37539.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
          Length = 713

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 72/197 (36%), Gaps = 11/197 (5%)

Query: 523 PTTIVVSATPGSWELEQCQGIIV---EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
               + SAT  S      +  +    E  ++ T      +E         D  D +    
Sbjct: 249 KQVALFSATMPSGIRRLSKQYLSDPREITVKATQRTSENIEQDYLLVSHRDKLDALTRIL 308

Query: 580 Q--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +  +   +++ V TK   E+L E L  R      ++ ++    R   +  L+ G+ D+LV
Sbjct: 309 EITEFEAMIMFVRTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILV 368

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLD+     V   D           S +  IGR  R       IL+     + 
Sbjct: 369 ATDVAARGLDVDRITHVFNYD-----IPHDTESYVHRIGRTGRAGRKGRAILFVTPRERR 423

Query: 697 IQLAIDETTRRREKQLE 713
           +  +I+  T+ R  ++E
Sbjct: 424 LLKSIERATKSRLNEIE 440


>gi|256376393|ref|YP_003100053.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
 gi|255920696|gb|ACU36207.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
          Length = 561

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 73/199 (36%), Gaps = 18/199 (9%)

Query: 521 LRPTTIVVSAT--PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
            +  T++ SAT  P   +L +       +I       +P         QV  V    +  
Sbjct: 185 KQRQTVLFSATMPPRIDKLARQHLTEPARITINQERAEPGEA--PRVRQVAYVVPRAHKP 242

Query: 579 AQQGL--------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           A  G           ++   T+   + LTE L  R  R   +H  +   +R  ++  LR 
Sbjct: 243 AALGRVLDVEAPTAAIVFCRTRDEVDQLTETLNGRGYRAESLHGGISQEQRDRVMARLRN 302

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G  D+LV  ++   GLD+ +   V   +        +  S +  IGR  R     V I  
Sbjct: 303 GTADLLVATDVAARGLDVEQLTHVVNYNV-----PSAPESYVHRIGRVGRAGREGVAITL 357

Query: 690 ADTITKSIQLAIDETTRRR 708
           A+     +   I+  T++R
Sbjct: 358 AEPREHGMLKTIERVTKQR 376


>gi|172065244|ref|YP_001815956.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171997486|gb|ACB68403.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 477

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V T+   + L   L E    V  +H +     R+  +   + G+  +LV  ++   
Sbjct: 247 ALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAAR 306

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA---- 700
           GLDI +  LV  +D             +  IGR  R   S V +      ++ QLA    
Sbjct: 307 GLDIDDLPLVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEA 361

Query: 701 -IDETTRRREKQLEHNKKHNINPQS 724
            I +T  RRE++     +H   P++
Sbjct: 362 LIGQTL-RREEEPGFEAEHR-VPET 384


>gi|88813706|ref|ZP_01128932.1| DEAD/DEAH box helicase-like protein [Nitrococcus mobilis Nb-231]
 gi|88789025|gb|EAR20166.1| DEAD/DEAH box helicase-like protein [Nitrococcus mobilis Nb-231]
          Length = 586

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 73/186 (39%), Gaps = 8/186 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V T+    +L E L  R      +  ++    R   ++ L+ GK D+LV  ++   
Sbjct: 251 MIVFVRTRTATVELAEKLEARGYAAAALSGDISQKLREHTVQRLKGGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           + +  IGR  R   +   IL+     + +   I++
Sbjct: 311 GLDVERISHVINYD-----IPNDTEAYVHRIGRTGRAGRAGDAILFVTPREQRMLRMIEK 365

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL--SLSKKKGK 761
            TR++   +       IN Q +     ++ D +  +D +     +++ Q    +   +  
Sbjct: 366 ATRQKITAMSPPSTEAINDQRIARFQQKISDVMAAQDLSFYRELMESYQRHHDVPAIEIA 425

Query: 762 AHLKSL 767
           A L  L
Sbjct: 426 AALAKL 431


>gi|300783976|ref|YP_003764267.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
 gi|299793490|gb|ADJ43865.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
          Length = 534

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 76/228 (33%), Gaps = 18/228 (7%)

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG 533
           D        +             +A+ GF +P   +   L  +         ++ SAT  
Sbjct: 178 DHVRQGTAHLGDCNFIALDEADQMADMGF-MPQVREIMDLTPQG-----GQRLLFSATLD 231

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLAAQQGLRILLT 588
                  +  + + +     +      + +    V     +D  D I     +  R ++ 
Sbjct: 232 GDVNRLVKQYLSDPVT--HSVAPSTASVTTMDHHVLQVSHQDKQDVITQIGARDGRTIMF 289

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK   + L E L E+ +    +H      +R  ++ D + G   VLV  ++   G+ +
Sbjct: 290 VRTKHHVDRLAERLREQGVNAAALHGGKTQGQRNRVLADFKEGHTPVLVATDVAARGIHV 349

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            +  LV  +D             +   GR AR   S V++   T  + 
Sbjct: 350 DDISLVLHVDP-----AADHKDYLHRAGRTARAGASGVVVTVATHDQR 392


>gi|289671093|ref|ZP_06492168.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 446

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 94/301 (31%), Gaps = 38/301 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+              +  +             + + GF      D R L   
Sbjct: 141 TPGRLIDYV----------KQHKVVSLHACEICVLDEADRMFDLGFI----KDIRFLLRR 186

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIR---SARTQVED 570
                   T++ SAT     LE     + E    ++    +    V  R    +  + + 
Sbjct: 187 MPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQT 246

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +   ++ G R ++ V TK   E +   L     RV  +  +V   +R  ++   + 
Sbjct: 247 LLLGLLSRSE-GARTMVFVNTKAFVERVARALERHGYRVGVLSGDVPQKKRESLLNRFQK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G+ ++LV  ++   GL I     V   D             +  IGR AR       I +
Sbjct: 306 GQLEILVATDVAARGLHIDGVKYVYNYD-----LPFDAEDYVHRIGRTARLGEEGDAISF 360

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
           A       + AI          +E   +  I  + V  +++  +            +  D
Sbjct: 361 ACE-----RYAISLPD------IEAYIEQKIPVEPVTSELLTPLPRAARVPVEGEEVDDD 409

Query: 750 A 750
           A
Sbjct: 410 A 410


>gi|163751207|ref|ZP_02158436.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
 gi|161329036|gb|EDQ00109.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
          Length = 611

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++   I++ V T+    +L E L  R      +H ++    R   +  L+ G  D+L+ 
Sbjct: 242 VEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGSLDILIA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLD+     V   D           + I  IGR  R   +   IL+       +
Sbjct: 302 TDVAARGLDVERIRHVINYD-----IPYDTEAYIHRIGRTGRAGRTGMAILFVTHREMRM 356

Query: 698 QLAIDETTRRR 708
              I+  T+ R
Sbjct: 357 LRTIERATKSR 367


>gi|126651493|ref|ZP_01723697.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
 gi|126591746|gb|EAZ85842.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
          Length = 513

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 13/192 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P   ++ +      E + I+   L    ++   ++SA  +  DV   +  
Sbjct: 177 QTLLFSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRLLN 236

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              Q    ++   TKR  ++L + L  R      +H ++   +RI ++R  +  K D+LV
Sbjct: 237 -VHQPELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   S + +   T  +  
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMG 350

Query: 698 QLAI-DETTRRR 708
            L I +ETT++R
Sbjct: 351 YLRIVEETTKKR 362


>gi|119195455|ref|XP_001248331.1| conserved hypothetical protein [Coccidioides immitis RS]
 gi|118582181|sp|Q1E5R1|DHH1_COCIM RecName: Full=ATP-dependent RNA helicase DHH1
          Length = 512

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 75/234 (32%), Gaps = 32/234 (13%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 215 SFHPKDRQVMLFSATFPMIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEERQKVH- 273

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 274 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQQNRNR 325

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 326 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 380

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQ-----LEHNKKHNINPQSVKEKIMEV 732
             + +          L   E     E Q     ++        P+++   I   
Sbjct: 381 LGLAINLINWDDRYNLYKIEQELGTEIQPIPPSIDKKLYVYDTPETIPRPIANA 434


>gi|121998794|ref|YP_001003581.1| DEAD/DEAH box helicase domain-containing protein [Halorhodospira
           halophila SL1]
 gi|121590199|gb|ABM62779.1| DEAD/DEAH box helicase domain protein [Halorhodospira halophila
           SL1]
          Length = 430

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 10/115 (8%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   I+       R L+   TKR AE L  YL    I    +  ++   +R +++   R 
Sbjct: 248 LLQHIDPR-----RTLIFANTKRAAERLVGYLKGNGIEAAVISGDIPQNKREQLLEQFRT 302

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           G+  VLVG ++   GL I     V   D             +  IGR AR   S 
Sbjct: 303 GELPVLVGTDVAARGLHIDAVSHVINFD-----LPHDPEDYVHRIGRTARAGESG 352


>gi|117922031|ref|YP_871223.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117614363|gb|ABK49817.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 619

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 9/153 (5%)

Query: 559 VEIRSARTQVEDVYDEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           +E R  +    +  + +      +    I++ V T+    +L E L  R      +H ++
Sbjct: 219 IEQRFVQVSQHNKLEALVRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDM 278

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
               R   +  L+ GK D+L+  ++   GLD+   G V   D           + +  IG
Sbjct: 279 NQQARERAVEQLKSGKLDILIATDVAARGLDVERIGHVVNYD-----IPYDTEAYVHRIG 333

Query: 677 RAARNVNSK-VILYADTITKSIQLAIDE-TTRR 707
           R  R   +   IL+  +    +   I+  T  R
Sbjct: 334 RTGRAGRTGMAILFVTSREMRMLRTIERATNSR 366


>gi|302308377|ref|NP_985263.2| AER408Wp [Ashbya gossypii ATCC 10895]
 gi|299789426|gb|AAS53087.2| AER408Wp [Ashbya gossypii ATCC 10895]
          Length = 398

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 11/134 (8%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK+  + L+  L + N  V  +H ++K  +R +++ D R
Sbjct: 257 DLYDSLTIT-----QCVIFCNTKKKVDWLSHKLIQNNFAVASIHGDMKQDDRDKVMSDFR 311

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G   VL+  ++   G+D+ +  LV   D           + I  IGR+ R     V I 
Sbjct: 312 SGSSRVLISTDVWARGIDVQQVSLVINYD-----LPELLENYIHRIGRSGRFGRKGVAIN 366

Query: 689 YADTITKSIQLAID 702
           +      +   +I+
Sbjct: 367 FITREEVTKLKSIE 380


>gi|261222221|ref|ZP_05936502.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|265998185|ref|ZP_06110742.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
 gi|260920805|gb|EEX87458.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|262552653|gb|EEZ08643.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
          Length = 323

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q   +   +  R     + GF       N   R  +       T + SAT    E+  
Sbjct: 20  LSQTRWLVLDEADRM---LDMGFI------NDVKRIAKATHAERQTALFSAT-MPKEIAS 69

Query: 540 CQGIIVEQIIR----PTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
               ++   +R    P G     +   +    T+ +       L       +++   TK 
Sbjct: 70  LAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKH 129

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
            A+ +  +L      V  +H       R   +   R G   +LV  ++   G+D+P    
Sbjct: 130 GADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGSSH 189

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
           V   D   E       + +  IGR  RN  S   + LY     +S   A++  TR
Sbjct: 190 VVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTR 239


>gi|68073071|ref|XP_678450.1| helicase  [Plasmodium berghei strain ANKA]
 gi|56498921|emb|CAH99688.1| helicase, truncated, putative [Plasmodium berghei]
          Length = 187

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   +    ++  RI++ V TKR A+ +T+ L    +    +H + K  ER  ++ D +
Sbjct: 7   NLKSLLQRIFKENDRIIVFVETKRSADFITKALRLEGMPALCIHGDKKQDERRWVLNDFK 66

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GK  +L+  ++   GLDI     V   D     F       +  IGR  R         
Sbjct: 67  TGKSPILIATDVASRGLDIKNVKFVINYD-----FPNQIEDYVHRIGRTGRAGAHGASFT 121

Query: 690 ADTITK 695
             T  K
Sbjct: 122 FLTSDK 127


>gi|254525036|ref|ZP_05137091.1| putative ATP-dependent RNA helicase [Stenotrophomonas sp. SKA14]
 gi|219722627|gb|EED41152.1| putative ATP-dependent RNA helicase [Stenotrophomonas sp. SKA14]
          Length = 565

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 89/283 (31%), Gaps = 36/283 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+              +  +             + + GF      D R L   
Sbjct: 133 TPGRLIDYV----------KQHKVVSLHACEICVLDEADRMFDLGFI----KDIRFLLRR 178

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIR---SARTQVED 570
                   T++ SAT     LE     + E    ++    +    V  R    A  +   
Sbjct: 179 MPERTIRQTLLFSATLSHRVLELAYEHMNEPQKLVVEAETITAARVRQRIYFPADDEKIP 238

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +   ++ G R ++ V TK   E +   L +   RV  +  +V   +R  ++   + 
Sbjct: 239 LLLGLLSRSE-GARTMVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQK 297

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+ ++LV  ++   GL I     V   D             +  IGR AR          
Sbjct: 298 GQLEILVATDVAARGLHIDGIKYVYNYD-----LPFDAEDYVHRIGRTARLGEEG----- 347

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
                +I  A +           +  +  I  + V ++++  +
Sbjct: 348 ----DAISFACERYAMGLPDIEAY-IEQKIPSEPVTKELLTPL 385


>gi|134095506|ref|YP_001100581.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
 gi|133739409|emb|CAL62459.1| Putative ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 468

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 81/244 (33%), Gaps = 15/244 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDV------YDEIN 576
            T++ SAT         + I  +  +I+  G       I+     V+D+       D + 
Sbjct: 206 QTMLFSATLDGTVGTMAKRITKDPLVIQIAGSATKHENIKQGVHFVDDLSHKNRLLDHLL 265

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +   + ++   TKR A+ + + L         +H ++    R   +  LR G+  VL
Sbjct: 266 -RDETMDQAVVFTATKRDADTIADRLNIAGFAAAALHGDMHQGARNRTLDGLRRGQIRVL 324

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+D+P    V   D  K          +  IGR  R   + + +      + 
Sbjct: 325 VATDVAARGIDVPAITHVFNYDLPKF-----PEDYVHRIGRTGRAGRNGIAVSLVNHAEG 379

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
           +   +    R  ++ +  +      P+           P   +       +    Q + S
Sbjct: 380 MN--VKRIERFIKQLIPVSVIEGFEPKRTASAPRSNHKPGGWKPGDNRGNAAKPGQRTFS 437

Query: 757 KKKG 760
           K   
Sbjct: 438 KPNA 441


>gi|332194953|gb|AEE33074.1| translation initiation factor 4A-2 [Arabidopsis thaliana]
          Length = 407

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 17/192 (8%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 198 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKE 257

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 258 DWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 315

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 316 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 370

Query: 685 KVILYADTITKS 696
            V +   T+   
Sbjct: 371 GVAINFVTLDDQ 382


>gi|326928431|ref|XP_003210383.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like
           [Meleagris gallopavo]
          Length = 604

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ I    G  
Sbjct: 330 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPITINVGRA 383

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 384 GAASLDVVQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 442

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 443 AIHGGKDQEERTKAIEAFRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 497

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 498 YVHRIGRTGRSGNTGIATTF------INKACDES 525


>gi|322705505|gb|EFY97090.1| DEAD/DEAH box RNA helicase [Metarhizium anisopliae ARSEF 23]
          Length = 650

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 3/125 (2%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G+R ++   ++R  ++L ++LY   + V  MHSE    ER   +R  R G+  +L+   +
Sbjct: 363 GVRTIIFANSRREVDNLDDFLYNMGLPVTSMHSERTQKEREAALRSFRAGQAPILIATGV 422

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT-KSIQL 699
              G+D+     V   D                IGR  R  +      + D +   S+  
Sbjct: 423 TARGIDVRNVMHVINYDLPSMEHG-GIEEYTHRIGRTGRIGHRGLATSFFDPVNDDSMGS 481

Query: 700 AIDET 704
            +  T
Sbjct: 482 VLTRT 486


>gi|259231914|gb|ACW20130.1| vasa protein [Strongylocentrotus nudus]
          Length = 104

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 5/106 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +   R L+ V TKR A+ L   L +       +H + +  ER E +RD + GK  +LV  
Sbjct: 1   KDDDRTLVFVATKRNADFLASLLSQSEFPTTSIHGDRQQQEREEALRDFKTGKAPILVAT 60

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           ++   GLDIP    V   D             +  IGR  R  N  
Sbjct: 61  SVAARGLDIPGVKHVVNYD-----LPTDIDEYVHRIGRTGRVGNLG 101


>gi|251812202|ref|ZP_04826675.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
 gi|251804299|gb|EES56956.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
          Length = 528

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 78/196 (39%), Gaps = 17/196 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPTG------LVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      EL Q Q +   +II+          +D    I     + +   + +
Sbjct: 196 QTMLFSATMPKAIQELVQ-QFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFL 254

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +    Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+
Sbjct: 255 D--VHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 312

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLDI     V   D       +   S    IGR  R     + + + + I 
Sbjct: 313 LVATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIE 367

Query: 695 KSIQLAIDETTRRREK 710
                 I++   RR K
Sbjct: 368 MDYIRQIEDVNNRRMK 383


>gi|303310497|ref|XP_003065260.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240104922|gb|EER23115.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 510

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 75/234 (32%), Gaps = 32/234 (13%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 213 SFHPKDRQVMLFSATFPMIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEERQKVH- 271

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 272 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQQNRNR 323

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 324 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 378

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQ-----LEHNKKHNINPQSVKEKIMEV 732
             + +          L   E     E Q     ++        P+++   I   
Sbjct: 379 LGLAINLINWDDRYNLYKIEQELGTEIQPIPPSIDKKLYVYDTPETIPRPIANA 432


>gi|47197048|emb|CAF87878.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 246

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 63/171 (36%), Gaps = 15/171 (8%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E+   + + ++ I +    V    ++           + +    Q    I +   + +
Sbjct: 59  PYEINLMEELTLKGITQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFCNSTQ 109

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L + + +      Y+H+++    R  +  D R G    LV  +L   G+DI    +
Sbjct: 110 RVELLAKKITQLGYSCFYIHAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNV 169

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
           V   D     F ++  + +  IGR+ R  +  + +   T         I+E
Sbjct: 170 VINFD-----FPKNAETYLHRIGRSGRFGHLGLAINLITSDDRFNLKTIEE 215


>gi|329945603|ref|ZP_08293336.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528606|gb|EGF55571.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 852

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 12/177 (6%)

Query: 538 EQCQGIIVEQIIRPTGLVDPP---VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           +     +  ++ RP   V        +   R ++  V   + +        ++ V TK  
Sbjct: 341 QHLHEPVQVEVSRPASTVATVHQTYAVVPFRHKIGAVSRVLAVTDA--EAAIVFVRTKST 398

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AED+   L  R I+   +  +V   ER  ++  LR G  DVLV  ++   GLD+   GLV
Sbjct: 399 AEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLVATDVAARGLDVDRIGLV 458

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE-TTRRRE 709
              D  +E       + +  IGR  R       + +     K     I+  T  R E
Sbjct: 459 VNFDVPRE-----AEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIERLTGSRLE 510


>gi|325102936|ref|YP_004272590.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324971784|gb|ADY50768.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 408

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 15/191 (7%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEI 575
            R  T+  SAT     ++     +V + +R       PV  ++    V     +D    +
Sbjct: 177 KRRQTMFFSATIND-TIKDLAYALVNKPVRIQLSPKDPVS-KNVDHAVAYVGMDDKRFFL 234

Query: 576 NLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
               +  QG +I++ V TK  AE + + +   NI    +H +     R +++ + R GK 
Sbjct: 235 ERLIKENQGKKIIVFVRTKIRAERVAKAMERVNIHTETIHGDKDQKNRFQVLDNFRDGKN 294

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADT 692
            +L+  ++   GLD+     V   D           + +  IGR  R     + + +   
Sbjct: 295 QILIATDISARGLDVKGVDFVVNYD-----LPEVPENYVHRIGRTGRGTSRGRAVSFCSE 349

Query: 693 ITKSIQLAIDE 703
             K+   AI E
Sbjct: 350 EEKAYLDAIQE 360


>gi|291453994|ref|ZP_06593384.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291356943|gb|EFE83845.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 469

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 20/197 (10%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------EDVY 572
           +  T++ SAT PG+      + +     IR T   D    + +    V         ++ 
Sbjct: 188 KRQTMLFSATMPGAVIGLARRYMTQPTHIRATSPDDEGATVANIAQHVFRAHSMDKPELV 247

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +GL  ++   TKR A D+ E L  R      +H ++    R + +R  R GK
Sbjct: 248 SRILQAEGRGL-AMIFCRTKRTAADIAEQLQRRGFASGAVHGDLGQGAREQALRAFRNGK 306

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
            DVLV  ++   G+D+     V             + + +  IGR  R   + + I   D
Sbjct: 307 VDVLVCTDVAARGIDVEGVTHVINYQT-----PEDEKTYLHRIGRTGRAGRAGIAITLVD 361

Query: 692 TITKS----IQLAIDET 704
                    I  A++ T
Sbjct: 362 WDDIPRWQLINKALELT 378


>gi|239942861|ref|ZP_04694798.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           15998]
          Length = 457

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 17/157 (10%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q  D Y      A +  R+++ + TK   + LT++L    +R   +H      +R   + 
Sbjct: 307 QGADKYATTTEIAARDGRVIMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLD 366

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             + G+  VLV  N+   G+ +    LV  +D             +   GR AR   S  
Sbjct: 367 RFKTGQVTVLVATNVAARGIHVDNLDLVVNVDP-----PTDHKDYLHRGGRTARAGESGS 421

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           ++                 +RRE          I PQ
Sbjct: 422 VVTLVLP-----------NQRREMTRLM-ADAGITPQ 446


>gi|227497408|ref|ZP_03927640.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
 gi|226833084|gb|EEH65467.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
          Length = 557

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 16/188 (8%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--------DVYDE 574
            T++ SAT PG+      + +     IR     D  + + S +  V         +V   
Sbjct: 245 QTMLFSATMPGAVVALARRYMSKPTHIRAQDPGDESMTVTSVKQVVYRTHALNKVEVVSR 304

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I  A  +G R ++   TKR A  + E L  R      +H ++    R + +R  R GK D
Sbjct: 305 ILQARGRG-RTIIFTRTKRTAARVAEDLGSRGFATAALHGDLGQGAREQALRAFRHGKVD 363

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           VLV  ++   G+D+ +   V             +   +  IGR  R  +S   + + D  
Sbjct: 364 VLVATDVAARGIDVDDVTHVINY-----QCPEDEKIYVHRIGRTGRAGHSGTAVTFVDWD 418

Query: 694 TKSIQLAI 701
                  I
Sbjct: 419 DVPRWRLI 426


>gi|115469764|ref|NP_001058481.1| Os06g0701100 [Oryza sativa Japonica Group]
 gi|97536398|sp|P35683|IF4A1_ORYSJ RecName: Full=Eukaryotic initiation factor 4A-1; Short=eIF-4A-1;
           AltName: Full=ATP-dependent RNA helicase eIF4A-1;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 4
 gi|53791892|dbj|BAD54014.1| eukaryotic initiation factor 4A [Oryza sativa Japonica Group]
 gi|53792733|dbj|BAD53769.1| eukaryotic initiation factor 4A [Oryza sativa Japonica Group]
 gi|113596521|dbj|BAF20395.1| Os06g0701100 [Oryza sativa Japonica Group]
 gi|125598400|gb|EAZ38180.1| hypothetical protein OsJ_22532 [Oryza sativa Japonica Group]
 gi|215712230|dbj|BAG94357.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215740601|dbj|BAG97257.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767366|dbj|BAG99594.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 414

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 79/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 205 YDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE 264

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 265 EWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDII 322

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 323 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 377

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 378 GVAINFVTRDDERMLFDIQR 397


>gi|1170511|sp|P41382|IF410_TOBAC RecName: Full=Eukaryotic initiation factor 4A-10; Short=eIF-4A-10;
           AltName: Full=ATP-dependent RNA helicase eIF4A-10
 gi|475213|emb|CAA55642.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
 gi|475216|emb|CAA55641.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
          Length = 413

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 377 GVAINFVTKDDERMLSDI 394


>gi|296136685|ref|YP_003643927.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
 gi|295796807|gb|ADG31597.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
          Length = 666

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 73/186 (39%), Gaps = 8/186 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK+  E+L E L  R      ++ +V    R  +++ L+ G+ D+LV  ++   
Sbjct: 249 MIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATDVAAR 308

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     + +  AI+ 
Sbjct: 309 GLDVERISHVVNYD-----IPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIER 363

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID--AQQLSLSKKKGK 761
            TR+   Q++      +N   +   +  + +    E        ++   Q+  +   +  
Sbjct: 364 ATRQPITQMQLPSTEAVNDSRISRFMERITEAREQEGLEDYQRLVERYEQEFDIPAIEIA 423

Query: 762 AHLKSL 767
           A L  +
Sbjct: 424 AALARM 429


>gi|241573363|ref|XP_002402985.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215502109|gb|EEC11603.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 431

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 78/216 (36%), Gaps = 28/216 (12%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
            + + GF         P   +    +RP   T++ SAT         +  + E +    G
Sbjct: 149 RMLDMGFE--------PQIRKIVEQIRPDRQTLMWSATWPKEVRSLAEDFLKEYVQINIG 200

Query: 554 LVDP--------PVEI---RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
            +           +++       T++  +  EI    ++  + ++   TKR  ++LT  +
Sbjct: 201 ALQLCANHRILQIIDVCQESEKDTKLLKLLQEIMN--ERENKTIIFAETKRKVDELTRRM 258

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
                    +H +    ER  ++ + R GK  +LV  ++   GLD+ +   V   D    
Sbjct: 259 RRDGWPAMCIHGDKSQPERDWVLTEFRSGKSPILVATDVAARGLDVDDIKFVINYD---- 314

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +       +  IGR AR+  +       T   S Q
Sbjct: 315 -YPNCSEDYVHRIGRTARSNKTGTAYTFFTPHNSKQ 349


>gi|134096391|ref|YP_001101466.1| putative cold-shock DeaD box ATP-dependent RNA helicase (partial
           match) [Herminiimonas arsenicoxydans]
 gi|133740294|emb|CAL63345.1| putative ATP-dependent RNA helicase DeaD-like [Herminiimonas
           arsenicoxydans]
          Length = 826

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 4/123 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L   L  R      ++ +++  +R   I+ L+ GK D+LV  ++   
Sbjct: 249 MIIFARTKLGTEELAGKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVATDVAAR 308

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+     V   D   +    S T  I   GRA R+     IL+     +++  AI+  
Sbjct: 309 GLDVERISHVINYDVPHD--PESYTHRIGRTGRAGRSGE--AILFIAPRERNLLKAIERA 364

Query: 705 TRR 707
           TR+
Sbjct: 365 TRQ 367


>gi|119962035|ref|YP_948481.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
 gi|119948894|gb|ABM07805.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
          Length = 566

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 68/183 (37%), Gaps = 16/183 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--------DVY 572
              T++ SAT PG       + +     IR     D  +  R  R  +         +V 
Sbjct: 220 VRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPNDEGLTKRDIRQLIYRAHSMDKTEVV 279

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +G R ++   TKR A  + E L +R      +H ++    R + +R  R  K
Sbjct: 280 ARILQARGRG-RTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNNK 338

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            DVLV  ++   G+D+ +   V          +  +   +  +GR  R  N    + + D
Sbjct: 339 VDVLVATDVAARGIDVDDVTHVINY-----QCVEDEKIYLHRVGRTGRAGNKGTAVTFVD 393

Query: 692 TIT 694
              
Sbjct: 394 WDD 396


>gi|119899811|ref|YP_935024.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119672224|emb|CAL96138.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 537

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 73/212 (34%), Gaps = 16/212 (7%)

Query: 521 LRPTTIVVSATPGSWELEQCQGII-----VEQIIRPTGLVDPPVEIR-SARTQVEDVYDE 574
            +   ++ SAT      +   G++     VE   R T        +    + Q  ++   
Sbjct: 183 KQRQNLLFSATFSDEIRDLANGLLHNPGCVEVAPRNTASERVEQTVYMIGQKQKRELLAW 242

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +    +Q  + L+   TK  A  L EYL + +I    +H       R   +   + G   
Sbjct: 243 LI-KEKQWFQALVFTRTKHGANKLAEYLTKHDIPAAAIHGNKSQSARTRALSQFKDGSLP 301

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTI 693
           VLV  ++   GLDI +   V   +             +  IGR  R   +   I   D  
Sbjct: 302 VLVATDIAARGLDIDQLPQVVNFE-----LPNVPEDYVHRIGRTGRAGADGNAISLVDGE 356

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
              +  AI+   RR+   ++        P +V
Sbjct: 357 EVKLLTAIERLIRRK---IDRATAEGFVPSAV 385


>gi|90075448|dbj|BAE87404.1| unnamed protein product [Macaca fascicularis]
          Length = 566

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 354

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 414

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 415 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 449


>gi|160873699|ref|YP_001553015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|304411613|ref|ZP_07393226.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307306611|ref|ZP_07586353.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|160859221|gb|ABX47755.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|304350140|gb|EFM14545.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306910579|gb|EFN41008.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|315265932|gb|ADT92785.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 640

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 72/196 (36%), Gaps = 23/196 (11%)

Query: 531 TPGSWELEQCQGIIVEQIIR-PTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQG----- 582
           TP   +L      + EQI R     +  PV +R   +Q  VE +       +Q       
Sbjct: 176 TPSERQLALFSATMPEQIKRVANQHLRNPVHVRIESSQTTVESIEQRFVQVSQHNKLEAL 235

Query: 583 ---------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                      +++ V T+    +L E L  R      +H ++    R   +  L+ GK 
Sbjct: 236 VRVLEVENTEGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKL 295

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
           D+L+  ++   GLD+   G V   D           + +  IGR  R   +   IL+  +
Sbjct: 296 DILIATDVAARGLDVERIGHVVNYD-----IPYDAEAYVHRIGRTGRAGRTGMAILFVTS 350

Query: 693 ITKSIQLAIDETTRRR 708
               +   I+ +T  R
Sbjct: 351 REMRMLRTIERSTNSR 366


>gi|322708721|gb|EFZ00298.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Metarhizium
           anisopliae ARSEF 23]
          Length = 1245

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 83/212 (39%), Gaps = 23/212 (10%)

Query: 512 PLRFEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPT--------GLVDPPVEI 561
           P   + +  +RP   TI+ SAT     ++     +++  +  T          ++  VE+
Sbjct: 787 PQVMKIFAGMRPDKQTILFSAT-MPRIIDSLTKKVLKSPVEITVGGRSVVAKEIEQIVEV 845

Query: 562 RSARTQVEDVYDEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           R   T+   V + +     +    R L+ V  +  A+DL + L  +      +H     +
Sbjct: 846 REENTKFLRVLELLGELYDRDEDARALIFVDRQEKADDLLKELMVKGYPCMSIHGGKDQV 905

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R   I D + G   +LV  ++   GLD+ +  LV   DA            +   GR  
Sbjct: 906 DRDSTISDFKKGVVPLLVATSVAARGLDVKQLKLVINYDA-----PNHLEDYVHRAGRTG 960

Query: 680 RNVNSKVILYADTITKS-----IQLAIDETTR 706
           R  N+ V +   T  +      I  A++++ +
Sbjct: 961 RAGNTGVAVTFVTPDQENCAPGIAKALEQSEQ 992


>gi|289571435|ref|ZP_06451662.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
           tuberculosis T17]
 gi|289545189|gb|EFD48837.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
           tuberculosis T17]
          Length = 489

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   +  A  +G   ++   TKR A+ + + L ER   V  +H ++  L R + ++  R
Sbjct: 259 ELVSRVLQARDRG-ATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFR 317

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G  DVLV  ++   G+DI +   V             +   +  IGR  R   + V + 
Sbjct: 318 TGGIDVLVATDVAARGIDIDDVTHVINY-----QCPEDEKMYVHRIGRTGRAGRTGVAVT 372

Query: 689 YADTITKSIQLAIDE 703
             D         ID+
Sbjct: 373 LVDWDELPRWSMIDQ 387


>gi|226501258|ref|NP_001151064.1| LOC100284697 [Zea mays]
 gi|194690824|gb|ACF79496.1| unknown [Zea mays]
 gi|195644024|gb|ACG41480.1| eukaryotic initiation factor 4A [Zea mays]
          Length = 410

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V I   
Sbjct: 201 YDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNIDKE 260

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 261 DWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 318

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 319 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 373

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 374 GVAINFVTRDDERMLFDIQR 393


>gi|160331247|ref|XP_001712331.1| eif4A [Hemiselmis andersenii]
 gi|159765778|gb|ABW98006.1| eif4A [Hemiselmis andersenii]
          Length = 401

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 8/151 (5%)

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           G+    + I     ++E ++D     + +  + ++ V  ++  E L   +   +  + ++
Sbjct: 235 GIKQFYIPIEKEEWKLEALFDI--YRSIKAEQSIIYVNARKKVEWLANKMKLNDFSIAFI 292

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H E++  ER E +++ R GKF VL+  +LL  G+DI +   V   D  +      K S I
Sbjct: 293 HGEMEQSERSETMKNFRFGKFRVLITTDLLSRGIDIEKVNFVINYDLPQY-----KESYI 347

Query: 673 QTIGRAARNVNSKV-ILYADTITKSIQLAID 702
             IGR+ R     V I +   +       I+
Sbjct: 348 HRIGRSGRFGKKGVAINFLSRVDVDNLREIE 378


>gi|256017200|ref|NP_001006319.2| probable ATP-dependent RNA helicase DDX6 [Gallus gallus]
          Length = 483

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 81/235 (34%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE++  + Q       D             L    + + L +     L     + S
Sbjct: 242 MIVLDEANKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 290

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ + +    V    ++           + +    Q    I +  
Sbjct: 291 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFC 341

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI 
Sbjct: 342 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 401

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 402 AVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 451


>gi|307824474|ref|ZP_07654699.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307734458|gb|EFO05310.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 441

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 66/180 (36%), Gaps = 14/180 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V TK  A+ L + L E  IR   +H +     R + +   + GK  VLV  ++  
Sbjct: 247 QVLVFVRTKHGADRLEKQLIEDGIRTAALHGDKTQGARNKALEQFKTGKVSVLVATDIAA 306

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAID 702
            GLDI +   V   D  +          I  IGR  R   N + +         + + I+
Sbjct: 307 RGLDIDDLPHVVNFDVPQV-----PEDYIHRIGRTGRAGANGEALSLVCPEEAWMLVEIE 361

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKA 762
           +  +R   Q+         P S+K     VID         T    D +       +G  
Sbjct: 362 KLLKR---QIPRVADTGYEPVSLK-----VIDAPKKNAPNKTTGKKDMRHTKKPAARGAK 413


>gi|224088798|ref|XP_002308545.1| predicted protein [Populus trichocarpa]
 gi|222854521|gb|EEE92068.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 79/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 377 GVAINFVTRDDERMLSDIQR 396


>gi|115452607|ref|NP_001049904.1| Os03g0308500 [Oryza sativa Japonica Group]
 gi|122247124|sp|Q10MH8|RH24_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 24
 gi|108707754|gb|ABF95549.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113548375|dbj|BAF11818.1| Os03g0308500 [Oryza sativa Japonica Group]
 gi|215737377|dbj|BAG96306.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 770

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 76/188 (40%), Gaps = 16/188 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT--------GLVDPPVEIRSART-QVEDVYDE 574
            T++ SAT   +++E+    I+   IR T          +   V +  +   ++  + ++
Sbjct: 399 QTLLFSAT-MPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEK 457

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +      G  +L+    K   +++   L +R  R+  +H +     R+E ++  + G + 
Sbjct: 458 LPGMIDDGD-VLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYH 516

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   GLDI     V   D  KE  +      I  IGR  R  +     Y     
Sbjct: 517 VLVATDVAARGLDIKSIKTVVNFDIAKEMDMH-----IHRIGRTGRAGDKDGTAYTLITQ 571

Query: 695 KSIQLAID 702
           K ++ A +
Sbjct: 572 KEVRFAGE 579


>gi|71031074|ref|XP_765179.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68352135|gb|EAN32896.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 417

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 31/205 (15%)

Query: 513 LRFEEWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPV 559
           L+F          I+ SAT             P + E+     + ++ I +    V+   
Sbjct: 211 LKFLPTEK---QIILYSATFPASVQAFKEQYLPNAHEINLMDDLTLKGITQFYAYVEERQ 267

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           ++             +    Q     ++   +    E L + + E      Y+H+++   
Sbjct: 268 KVH--------CLSTLFARLQINQ-AIIFCNSVVRVELLAKKITELGFSCFYIHAKMMQS 318

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            R  +  D R G    LV  +L   G+D     +V   D     F ++ ++ +  IGR+ 
Sbjct: 319 HRNRVFHDFRNGACRCLVSSDLFTRGIDFRFVNVVVNFD-----FPKNSSTYLHRIGRSG 373

Query: 680 RNVNSK-VILYADTITKSIQLAIDE 703
           R  +    I       K     I+E
Sbjct: 374 RFGHLGLAINLVTEQDKEALFKIEE 398


>gi|320583801|gb|EFW98014.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Pichia angusta DL-1]
          Length = 396

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 76/184 (41%), Gaps = 21/184 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DV 571
              +VVSAT     L      + + +        +   G+    +++     + +   D+
Sbjct: 197 TQVVVVSATLPKAVLSLTNKFMSDPVKILVKRDELTLEGINQYYIQVEKEDWKFDTLCDL 256

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   TK+  + L+E L + N  V  MH +++  ER  ++ + RLG
Sbjct: 257 YDSLTIT-----QAVIFCNTKKKVDWLSESLRKANFTVSSMHGDMQQDERDRVMDEFRLG 311

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
              VL+  ++   G+D+ +  LV   D         K + +  IGR+ R     V +   
Sbjct: 312 NSRVLISTDIWARGIDVQQVSLVINYD-----LPYDKENYVHRIGRSGRFGRKGVAINFV 366

Query: 692 TITK 695
           T  +
Sbjct: 367 TRNE 370


>gi|295657321|ref|XP_002789230.1| ATP-dependent RNA helicase DHH1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226283998|gb|EEH39564.1| ATP-dependent RNA helicase DHH1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 515

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 35/226 (15%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 215 SFHPKDRQIMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVH- 273

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+++    R  
Sbjct: 274 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNR 325

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 326 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 380

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +          L   E     E Q          PQS+ +K+
Sbjct: 381 LGLAINLINWEDRYNLYKIEQELGTEIQ--------PIPQSIDKKL 418


>gi|224371289|ref|YP_002605453.1| RecQ2 [Desulfobacterium autotrophicum HRM2]
 gi|223694006|gb|ACN17289.1| RecQ2 [Desulfobacterium autotrophicum HRM2]
          Length = 537

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 77/207 (37%), Gaps = 19/207 (9%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII------ 549
            L + GF      D R + +   +     T+  SAT     L       V+  +      
Sbjct: 257 RLLDMGFI----PDMRNIIYNTPHKKERQTLFFSATLAPEILRMANQWTVDPAVVEIDPD 312

Query: 550 -RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
                 ++  V I +   +   +Y+ I+   ++  R++L V  +     + + L + +I 
Sbjct: 313 KTAADSINQKVFIVTEDQKFPLLYNLIS--GEKLERVILFVNMRSTTRRIAQRLVQFDIS 370

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +  EV   +RI  + D R GK  VLV  ++   GL I     V   D       +  
Sbjct: 371 SEILSGEVSQKQRIRTLDDFRNGKVRVLVATDVAARGLHIEGVSHVINYD-----LPQDP 425

Query: 669 TSLIQTIGRAARNVNSKV-ILYADTIT 694
              I  IGR  R     + + +AD ++
Sbjct: 426 EHYIHRIGRTGRAGAEGISVSFADEMS 452


>gi|296201834|ref|XP_002748196.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 3
           [Callithrix jacchus]
          Length = 544

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 235 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 284

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 285 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 344

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 345 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 379


>gi|237746640|ref|ZP_04577120.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
 gi|229377991|gb|EEO28082.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
          Length = 461

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 7/140 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+   TKR A+ + + L         +H ++    R   +  LR GK  +LV  ++  
Sbjct: 270 QALVFTATKRDADLVADRLAIAGFSTAALHGDMPQNARNRTLAKLRDGKVKILVATDVAA 329

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            G+DIP    V   D  K          +  IGR  R     + +   + + S   ++  
Sbjct: 330 RGIDIPSITHVFNYDLPKF-----PEDYVHRIGRTGRAGRHGLAISLVSHSDSA--SMKR 382

Query: 704 TTRRREKQLEHNKKHNINPQ 723
             R  ++ +  N      P+
Sbjct: 383 IERFTKQTIPVNVIEGFEPK 402


>gi|169829741|ref|YP_001699899.1| ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus C3-41]
 gi|168994229|gb|ACA41769.1| Probable ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus
           C3-41]
          Length = 508

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 13/192 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P   ++ +      E + I+   L    ++   ++SA  +  DV   +  
Sbjct: 177 QTLLFSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRLLN 236

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              Q    ++   TKR  ++L + L  R      +H ++   +RI ++R  +  K D+LV
Sbjct: 237 -VHQPELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   S + +   T  +  
Sbjct: 296 ATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMG 350

Query: 698 QLAI-DETTRRR 708
            L I +ETT++R
Sbjct: 351 YLRIVEETTKKR 362


>gi|160915730|ref|ZP_02077938.1| hypothetical protein EUBDOL_01739 [Eubacterium dolichum DSM 3991]
 gi|158432206|gb|EDP10495.1| hypothetical protein EUBDOL_01739 [Eubacterium dolichum DSM 3991]
          Length = 572

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 35/216 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            TI+ SAT  S  +   +    + +          VEI+SA+  + D  +++     +G 
Sbjct: 180 QTILFSATWPSEIMRIAKEFQNDPVT---------VEIKSAQRTI-DTVEQLYYEVPRGK 229

Query: 584 R---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +                ++   TK+M ++L   L + +I+   +H ++K   R  ++   
Sbjct: 230 KANALRVLLNHYDPELCMIFANTKKMVDELQGELNKHDIKACALHGDMKQEFRSRVMEQF 289

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G   +L+  ++   G+D+ +  LV   D       +     I  IGR  R     + +
Sbjct: 290 RSGSMPILIATDVAARGIDVDDVDLVINFD-----IPQDNEYYIHRIGRTGRAGKKGLAI 344

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
               I+   Q +  +   R  K    N KH+  P S
Sbjct: 345 TL--ISGGRQRSELKNIMRYTKT---NIKHHALPTS 375


>gi|156098189|ref|XP_001615127.1| eukaryotic initiation factor [Plasmodium vivax SaI-1]
 gi|148804001|gb|EDL45400.1| eukaryotic initiation factor, putative [Plasmodium vivax]
          Length = 388

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 22/199 (11%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE---IRSARTQVE- 569
            +       ++ SAT     LE     +   V+ +++   L    ++   +   + Q + 
Sbjct: 183 RFLSPNTQIVLSSATLPQEVLEITNKFMHRPVKILVKRDELTLEGIKQFFVSIEKEQWKY 242

Query: 570 ----DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
               D+Y+ + +      + ++   TK   + LT+ + E N  V  MH+ +   ER +I+
Sbjct: 243 ETLADLYESLTIT-----QAVVFCNTKLKVDWLTKKMQEANFTVCKMHAGMSQSERDDIM 297

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R  KF VL+  ++   GLD+ E  LV   D        S+ S I  IGR+ R     
Sbjct: 298 LKFRQCKFRVLISTDIWGRGLDVQEVSLVVNYD-----LPNSRESYIHRIGRSGRFGRKG 352

Query: 686 V-ILYADTITKSIQLAIDE 703
           V I +       I   I++
Sbjct: 353 VAINFVKNDDIKILRDIEQ 371


>gi|126291595|ref|XP_001381058.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 649

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 375 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 428

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 429 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 487

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 488 AIHGGKDQEERTKAIEAFRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 542

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 543 YVHRIGRTGRSGNTGIATTF------INKACDES 570


>gi|157126319|ref|XP_001654592.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882564|gb|EAT46789.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 699

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A+   + ++ V TKR  +D+T  +     R   +H +    ER  ++   R G+  +LV 
Sbjct: 366 AENETKTIIFVETKRRVDDITRNINRNGWRAVSIHGDKSQQERDYVLNAFRNGRQGILVA 425

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  +    +  IGR  R+ N+    Y      +  
Sbjct: 426 TDVAARGLDVEDVKFVINYD-----YPSNSEDYVHRIGRTGRSNNTGTA-YTLFTNSNAN 479

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
            A D     RE          INP+
Sbjct: 480 KAGDLINVLRE------ANQVINPK 498


>gi|317151291|ref|XP_001824556.2| DEAD/DEAH box RNA helicase [Aspergillus oryzae RIB40]
          Length = 593

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 87/250 (34%), Gaps = 15/250 (6%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTI-PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF 515
            P  L +++ +  +L +     TI  +   +   D+         G  +    D+R + F
Sbjct: 282 TPGRLLDFMDKPHILSLRRVKYTIIDEADELLLADWESDFNKIMSGGDMNEDADHRYMMF 341

Query: 516 -EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP--TGLVDPPVEIRSARTQVEDVY 572
              +N                        +  +I RP  T +      + S     +   
Sbjct: 342 SATFNKECRQLARKF---------LAGDHVRIRIGRPGSTHINVDQTIVYSEEHLKKQCL 392

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            ++ LA     R L+ V +K  A+ L +YLY   +    +HS+    ER + +R  R  K
Sbjct: 393 YDLLLAMPPS-RTLIFVNSKAQADLLDDYLYNMGLPSTSIHSDRTQREREDALRAFRTAK 451

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             +LV   +   GLDI     V   D  ++         +  IGR AR  N  +      
Sbjct: 452 CPILVATGVSARGLDIKNVMHVVNYDLPRQSHG-GIVEYVHRIGRTARIGNEGLATSFYN 510

Query: 693 ITKSIQLAID 702
             +   LA D
Sbjct: 511 HDRDSDLAPD 520


>gi|238505736|ref|XP_002384077.1| DEAD/DEAH box RNA helicase, putative [Aspergillus flavus NRRL3357]
 gi|220690191|gb|EED46541.1| DEAD/DEAH box RNA helicase, putative [Aspergillus flavus NRRL3357]
          Length = 604

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V +K  A+ L +YLY   +    +HS+    ER + +R  R  K  +LV   +  
Sbjct: 414 RTLIFVNSKAQADLLDDYLYNMGLPSTSIHSDRTQREREDALRAFRTAKCPILVATGVSA 473

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            GLDI     V   D  ++         +  IGR AR  N  +        +   LA D
Sbjct: 474 RGLDIKNVMHVVNYDLPRQSHG-GIVEYVHRIGRTARIGNEGLATSFYNHDRDSDLAPD 531


>gi|126696546|ref|YP_001091432.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543589|gb|ABO17831.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9301]
          Length = 593

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 94/245 (38%), Gaps = 16/245 (6%)

Query: 523 PTTIVVSATPGSWEL----EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
              ++ SAT    E+    ++      E +I+        +  +    Q     D +   
Sbjct: 227 KQMVLFSAT-MPNEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRI 285

Query: 579 AQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +     +++ V TK +   + E L      V  ++ ++   +R   +  L+ G  ++LV
Sbjct: 286 LELNNEGVIIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILV 345

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLD+    LV   D     F   K +    IGR  R   S   IL+ +   K 
Sbjct: 346 ATDVAARGLDVERIKLVVNYD-----FPFDKETYTHRIGRTGRAGRSGEAILFVNLREKH 400

Query: 697 IQLAIDETTRRR--EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
               ++ +TR +  E  +  NK   IN + +++ I    +  L +D    N ++    L 
Sbjct: 401 FLRNLENSTRTKIEEINIPSNKI--INEKRMEKLIDSFNESSLAKDENEENKALIIDVLD 458

Query: 755 LSKKK 759
             K+K
Sbjct: 459 NLKEK 463


>gi|222086716|ref|YP_002545250.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
 gi|221724164|gb|ACM27320.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
          Length = 556

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 16/191 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQ---VEDVYD 573
           +  T++ SAT      +     +   +   + P G     VE  +     Q    E + +
Sbjct: 196 KRQTMLFSATMPKTIADLAAEYLTNPVKVEVSPPGKAADKVEQYVHFVSGQNHKTEILKE 255

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I+  A    R ++ + TK  AE L ++L         +H      +R   ++  R G+ 
Sbjct: 256 SIS--ANPDGRAMVFLRTKHGAEKLMKHLEHVGFAAASIHGNKSQGQRERALKGFRDGEV 313

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
            VLV  ++   G+DIP    V   D           + +  IGR AR     + I +   
Sbjct: 314 RVLVATDVAARGIDIPGVTHVYNYD-----LPEVPDAYVHRIGRTARAGRDGIAIAFCAP 368

Query: 693 ITKSIQLAIDE 703
               +   I+ 
Sbjct: 369 DEARLLRDIER 379


>gi|15836857|ref|NP_297545.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
 gi|9105065|gb|AAF83065.1|AE003878_13 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
          Length = 614

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 72/187 (38%), Gaps = 9/187 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R +    ++ +++  +R   I  L+ GK D+LV  ++   
Sbjct: 257 MIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAAR 316

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     K +   I+ 
Sbjct: 317 GLDVERISHVLNYD-----IPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIER 371

Query: 704 TTRRREKQLEHNKKHNINPQSVKE---KIMEVIDPILLEDAATTNISIDAQQLSLSKKKG 760
            T +  + ++      +N   V +   +I   +      D     +     + ++   + 
Sbjct: 372 ATHQPIEAMQLPSVDAVNDTRVAKFFGRISNALVVGAEIDFYRKLLQRFESEHNVPAIEI 431

Query: 761 KAHLKSL 767
            A L  L
Sbjct: 432 AAALARL 438


>gi|292486656|ref|YP_003529526.1| putative ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
 gi|291552073|emb|CBA19110.1| putative ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
          Length = 430

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 89/258 (34%), Gaps = 44/258 (17%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNR 511
           L +Y          ++HV +  I  +   +  R   L   GF         R+P+     
Sbjct: 145 LIDY--------AKQNHVNLGAIQVVVLDEADRMFDL---GFIKDIRWLFRRMPAASQRL 193

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELE-----QCQGIIVEQIIRPTGLVDPPVEIRSART 566
            + F      R   +       +  +E     +    I E++  P+       ++R  +T
Sbjct: 194 NMLFSATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELFYPSNEE----KMRLLQT 249

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            +E+         +   R ++   TK   ED+  +L     RV  +  +V   +R+ I+ 
Sbjct: 250 LIEE---------EWPDRTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD 300

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSK 685
           D   G  D+LV  ++   GL IP    V   D         +   +  IGR  R   N  
Sbjct: 301 DFTKGDVDILVATDVAARGLHIPAVTHVFNYD-----LPDDREDYVHRIGRTGRAGANGH 355

Query: 686 VILYADTITKSIQLAIDE 703
            I  A         AI+E
Sbjct: 356 SISLACEEYALNLTAIEE 373


>gi|264679797|ref|YP_003279706.1| hypothetical protein CtCNB1_3664 [Comamonas testosteroni CNB-2]
 gi|262210312|gb|ACY34410.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 453

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 12/195 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-A 579
           T++ SAT            + +    ++ RP       VE R  +   +D    I     
Sbjct: 167 TLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETAST-VEQRFYKVTDDDKRYAIRSVLK 225

Query: 580 QQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++ +R   +   +K     LT  L    +R   +H +    ER++ +   + G+ D+LV 
Sbjct: 226 ERDIRQAFIFSNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKAGEVDLLVC 285

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI +   V   D        +    +  IGR  R   S + +   T   S  
Sbjct: 286 TDVAARGLDIKDVPAVFNYDVPF-----NAEDYVHRIGRTGRAGASGLAVTLVTDHDSRN 340

Query: 699 LAIDETTRRREKQLE 713
           +A  E   +++ ++E
Sbjct: 341 VADIEKLTKKKIEVE 355


>gi|251778083|ref|ZP_04821003.1| cold-shock deAd box protein a [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082398|gb|EES48288.1| cold-shock deAd box protein a [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 367

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 73/203 (35%), Gaps = 19/203 (9%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE----- 574
             +  T+  SAT  S   +     +++ +     +  P + +   + QV +  D      
Sbjct: 172 SKKHQTLCFSATMDSQVKKLAYRYMIDPL--FIDIKSPTIAVDKIKQQVVETTDRWKQDS 229

Query: 575 --INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               L        ++   TKR A+ L   L+++ +  + +HS+V   +R  I++  R   
Sbjct: 230 LCATLQEDNPFMAIIFCRTKRRADVLEIALHQKGLNCQKIHSDVPQAKRERIMKSFRNAD 289

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
              L+  ++   G+DI     +   D        +  S I  IGR  R            
Sbjct: 290 IQYLIATDVAARGIDISGVSHIYNYDT-----PETPESYIHRIGRTGRAGEDGYTCMFVA 344

Query: 693 ITKS-IQLAIDE----TTRRREK 710
              S +  AI+     T  RRE 
Sbjct: 345 PKDSNLLNAIETKLGFTIPRREI 367


>gi|254452993|ref|ZP_05066430.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238]
 gi|198267399|gb|EDY91669.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238]
          Length = 439

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 72/202 (35%), Gaps = 24/202 (11%)

Query: 524 TTIVVSATPGSWELEQCQGII-------VEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT      E     +       V+   +P   ++  V   +   + + + + I+
Sbjct: 177 QTMLFSATMPKLMAELAGAFLKNPMRVQVDAPGKPVERIEQSVHFVAKAAKTDLLLELID 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               +  R ++   TK  +E L + L  +      +H      +R   I D + GK  +L
Sbjct: 237 --KHRDERAIVFGRTKHGSEKLHKLLASKGFLSASIHGNKSQGQRDRAITDFKAGKVTIL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITK 695
           V  ++   GLDIPE   V   D           + +  IGR AR   +   I +      
Sbjct: 295 VATDVAARGLDIPEVKHVYNYD-----LPNVAENYVHRIGRTARAGADGMAIAFC----- 344

Query: 696 SIQLAIDETTRRREKQLEHNKK 717
               A DE    R+ Q      
Sbjct: 345 ----APDEMGELRDIQKAMKAD 362


>gi|157073998|ref|NP_001096708.1| probable ATP-dependent RNA helicase DDX52 [Bos taurus]
 gi|160380636|sp|A5D7C1|DDX52_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX52; AltName:
           Full=DEAD box protein 52
 gi|146186791|gb|AAI40502.1| DDX52 protein [Bos taurus]
 gi|296477012|gb|DAA19127.1| probable ATP-dependent RNA helicase DDX52 [Bos taurus]
          Length = 596

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H++    +R   +   R GK
Sbjct: 401 MRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGK 460

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  +  K + +  
Sbjct: 461 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGHKGKAVTFFT 515

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 516 EDDKPLLRSV 525


>gi|12850261|dbj|BAB28651.1| unnamed protein product [Mus musculus]
          Length = 304

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++  + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  
Sbjct: 28  EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 87

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           ++   GLD+ +   V   D     +  S    I  IGR AR+  +       T   
Sbjct: 88  DVASRGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 138


>gi|322701321|gb|EFY93071.1| DEAD/DEAH box RNA helicase [Metarhizium acridum CQMa 102]
          Length = 631

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 3/125 (2%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G+R ++   ++R  ++L ++LY   + V  MHSE    ER   +R  R G+  +L+   +
Sbjct: 363 GVRTIIFANSRREVDNLDDFLYNMGLPVTSMHSERTQKEREAALRSFRAGQAPILIATGV 422

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT-KSIQL 699
              G+D+     V   D                IGR  R  +      + D +   S+  
Sbjct: 423 TARGIDVRNVMHVINYDLPTMEHG-GIEEYTHRIGRTGRIGHRGLATSFFDPVNDDSMAS 481

Query: 700 AIDET 704
            +  T
Sbjct: 482 VLTRT 486


>gi|297269347|ref|XP_002808135.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DDX6-like [Macaca mulatta]
          Length = 486

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D             L    + + L +     L     + S
Sbjct: 245 MIVLDEADKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 293

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ + +    V    ++           + +    Q    I +  
Sbjct: 294 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFC 344

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI 
Sbjct: 345 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 404

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 405 AVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 454


>gi|238506126|ref|XP_002384265.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Aspergillus flavus
           NRRL3357]
 gi|220690379|gb|EED46729.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Aspergillus flavus
           NRRL3357]
          Length = 453

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 75/226 (33%), Gaps = 35/226 (15%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 157 SFHPKDRQVMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVH- 215

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 216 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNR 267

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 268 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 322

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +          L   E     E Q          PQ++ +K+
Sbjct: 323 LGLAINLINWDDRFNLYKIEQELGTEIQ--------PIPQNIDKKL 360


>gi|115403005|ref|XP_001217579.1| hypothetical protein ATEG_08993 [Aspergillus terreus NIH2624]
 gi|121734401|sp|Q0CBE1|DHH1_ASPTN RecName: Full=ATP-dependent RNA helicase dhh1
 gi|114189425|gb|EAU31125.1| hypothetical protein ATEG_08993 [Aspergillus terreus NIH2624]
          Length = 509

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 75/226 (33%), Gaps = 35/226 (15%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 215 SFHPKDRQVMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVH- 273

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 274 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNR 325

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 326 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 380

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +          L   E     E Q          PQ++ +K+
Sbjct: 381 LGLAINLINWDDRFNLYKIEQELGTEIQ--------PIPQNIDKKL 418


>gi|73954679|ref|XP_860431.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX6
           (DEAD-box protein 6) (ATP-dependent RNA helicase p54)
           (Oncogene RCK) isoform 4 [Canis familiaris]
          Length = 490

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D             L    + + L +     L     + S
Sbjct: 249 MIVLDEADKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 297

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ + +    V    ++           + +    Q    I +  
Sbjct: 298 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFC 348

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI 
Sbjct: 349 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 408

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 409 AVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 458


>gi|16117825|dbj|BAB69820.1| putative ATP-dependent RNA helicase [Streptococcus sobrinus]
          Length = 522

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 99/261 (37%), Gaps = 23/261 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
            T++ SAT     +++     +++     I    L    VE    R +  + +D +    
Sbjct: 176 QTLLFSAT-MPDAIKRIGVKFMKEPEHVKIAAKELTSDNVEQFYIRVKEREKFDTMTRLI 234

Query: 580 --QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ +IRD +    D+LV
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +  
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEMG 349

Query: 698 QLAIDET-TRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
            L+I E  T++R K       Q     K  +  + ++    +       +      + + 
Sbjct: 350 YLSIIENLTKKRMKGLKPASAQDAFQAKKAVALKKIERDFSDESIRSNFDKFKGDALKLA 409

Query: 750 AQQLSLSKKKGKAHLKSLRKQ 770
            +    S ++   ++ SL  Q
Sbjct: 410 EEF---SPEELALYILSLTVQ 427


>gi|289751901|ref|ZP_06511279.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
           tuberculosis T92]
 gi|289692488|gb|EFD59917.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
           tuberculosis T92]
          Length = 328

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   +  A  +G   ++   TKR A+ + + L ER   V  +H ++  L R + ++  R
Sbjct: 156 ELVSRVLQARDRG-ATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFR 214

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G  DVLV  ++   G+DI +   V             +   +  IGR  R   + V + 
Sbjct: 215 TGGIDVLVATDVAARGIDIDDVTHVINY-----QCPEDEKMYVHRIGRTGRAGRTGVAVT 269

Query: 689 YADTITKSIQLAIDE 703
             D         ID+
Sbjct: 270 LVDWDELPRWSMIDQ 284


>gi|255642429|gb|ACU21478.1| unknown [Glycine max]
          Length = 413

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 82/211 (38%), Gaps = 25/211 (11%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +   +  V   H ++    R  I
Sbjct: 264 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHN 715
            V +   T   S  L+        + Q  +N
Sbjct: 377 GVAINFVTADDSRMLS--------DIQKFYN 399


>gi|168021119|ref|XP_001763089.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685572|gb|EDQ71966.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 514

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 14/181 (7%)

Query: 524 TTIVVSAT-PGSWEL-------EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E        +  +  I    ++    +D  VE+ S   +   +   +
Sbjct: 274 QTLYWSATWPKEVEFLARQFLNDPYKVTIGSSDLKANHAIDQVVEVVSEHEKYPKLIKLL 333

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G R+L+ + TKR  + +T  L         +H +    ER  ++ + + GK  +
Sbjct: 334 EE-IMDGSRLLVFMETKRGCDQVTRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPI 392

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  S    +  IGR  R           T   
Sbjct: 393 MTATDVAARGLDVKDIKCVINYD-----FPGSCEDYVHRIGRTGRAGAKGAAYTFFTAAN 447

Query: 696 S 696
           +
Sbjct: 448 A 448


>gi|225444867|ref|XP_002281219.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297738640|emb|CBI27885.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 377 GVAINFVTRDDERMLFDIQR 396


>gi|327268478|ref|XP_003219024.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Anolis
           carolinensis]
          Length = 706

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 17/173 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII---------RPTGLVDPPVEIRSARTQVEDVY 572
              T++ SAT    E++      +E+ I             +    V +  +  +   + 
Sbjct: 416 VRQTMMFSAT-FPKEIQMLARDFLEEYIFLAVGRVGSTSENITQKVVWVEDSDKRSFLL- 473

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            ++  A  +    L+ V TK+ A+ L ++L+        +H +    +R E +   R G+
Sbjct: 474 -DLLDATGKDSLTLVFVETKKGADSLEDFLFREGYACTSIHGDRSQRDREEALHQFRSGR 532

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 533 SPILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 580


>gi|319399568|gb|EFV87823.1| DEAD/DEAH box helicase family protein [Staphylococcus epidermidis
           FRI909]
          Length = 509

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 78/196 (39%), Gaps = 17/196 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPTG------LVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      EL Q Q +   +II+          +D    I     + +   + +
Sbjct: 177 QTMLFSATMPKAIQELVQ-QFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFL 235

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +    Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+
Sbjct: 236 D--VHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLDI     V   D       +   S    IGR  R     + + + + I 
Sbjct: 294 LVATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIE 348

Query: 695 KSIQLAIDETTRRREK 710
                 I++   RR K
Sbjct: 349 MDYIRQIEDVNNRRMK 364


>gi|315179704|gb|ADT86618.1| hypothetical protein vfu_A01441 [Vibrio furnissii NCTC 11218]
          Length = 536

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 88/264 (33%), Gaps = 37/264 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   ++++           Q+  +   +  R     + GF      D R  +  
Sbjct: 130 TPGRLMDLYNQNAV--------KFDQLEVLVLDEADRM---LDMGFI----RDIR--KIL 172

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDV 571
           E        ++ SAT         +G++   VE  + P       VE  +  A   V+  
Sbjct: 173 ELLPKNRQNLLFSATFSDEIRALAKGLVNDPVEISVSPANSTAKTVEQCVYPAD--VKKK 230

Query: 572 YDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
              +    + G   ++L+   TKR A  L  +L E  I+   +H       R   + + +
Sbjct: 231 APMLVKLIKDGNWQQVLVFTRTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFK 290

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G+  VLV  ++   G+DIP+   V   +             +  IGR  R   +   I 
Sbjct: 291 SGELRVLVATDIAARGIDIPQLPQVVNFE-----LPNIAEDYVHRIGRTGRAGEAGRAIS 345

Query: 689 YADTITKSIQLAIDETTRRREKQL 712
               +       I+     R  Q 
Sbjct: 346 LVCAVEAPDLFGIE-----RLIQQ 364


>gi|240140800|ref|YP_002965280.1| RNA helicase [Methylobacterium extorquens AM1]
 gi|240010777|gb|ACS42003.1| RNA helicase [Methylobacterium extorquens AM1]
          Length = 519

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 64/190 (33%), Gaps = 18/190 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-----QIIRPTGLVDPPVEIRSARTQVE-----DVYD 573
            T+  SAT    E+E+   + +      ++ RP       +E R   T  E      V  
Sbjct: 179 QTLFFSAT-MPPEIERLADMFLHNPQRVEVARPASTATT-IEQRLVATGAEGHEKRKVLR 236

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +  +A +    ++    KR    L   L         +H ++    R+  +   R G+ 
Sbjct: 237 HLIRSASELQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEV 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
            +LV  ++   GLDIP    V   D             +  IGR  R   S      A  
Sbjct: 297 PLLVASDVAARGLDIPAVSHVFNFDV-----PHHPEDYVHRIGRTGRAGRSGQAFTLASR 351

Query: 693 ITKSIQLAID 702
             +    AI+
Sbjct: 352 SDERSLSAIE 361


>gi|148910547|gb|ABR18348.1| unknown [Picea sitchensis]
 gi|224284155|gb|ACN39814.1| unknown [Picea sitchensis]
 gi|224286107|gb|ACN40764.1| unknown [Picea sitchensis]
          Length = 413

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 79/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPSKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 DWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 377 GVAINFVTKDDERMLQDIQR 396


>gi|188583653|ref|YP_001927098.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
 gi|179347151|gb|ACB82563.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 501

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 65/190 (34%), Gaps = 18/190 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-----QIIRPTGLVDPPVEIRSARTQVE-----DVYD 573
            T+  SAT    E+E+   + +      ++ RP+      +E R   T  E      +  
Sbjct: 179 QTLFFSAT-MPPEIERLADMFLHNPQRVEVARPSSTATT-IEQRLVATGAEGHEKRKILR 236

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +  +A +    ++    KR    L + L      V  +H ++    R   +   R G+ 
Sbjct: 237 HLIRSADELQNGIIFCNRKRDVALLQKSLASHGFNVAALHGDMDQRARTAALDGFRSGEV 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADT 692
            +LV  ++   GLDIP    V   D             +  IGR  R          A  
Sbjct: 297 PLLVASDVAARGLDIPAVSHVFNFDV-----PHHPEDYVHRIGRTGRAGRAGHAFTLASR 351

Query: 693 ITKSIQLAID 702
             +    AI+
Sbjct: 352 ADERSLAAIE 361


>gi|163853383|ref|YP_001641426.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163664988|gb|ABY32355.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
          Length = 519

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 64/190 (33%), Gaps = 18/190 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-----QIIRPTGLVDPPVEIRSARTQVE-----DVYD 573
            T+  SAT    E+E+   + +      ++ RP       +E R   T  E      V  
Sbjct: 179 QTLFFSAT-MPPEIERLADMFLHNPQRVEVARPASTATT-IEQRLVATGAEGHEKRKVLR 236

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +  +A +    ++    KR    L   L         +H ++    R+  +   R G+ 
Sbjct: 237 HLIRSASELQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEV 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
            +LV  ++   GLDIP    V   D             +  IGR  R   S      A  
Sbjct: 297 PLLVASDVAARGLDIPAVSHVFNFDV-----PHHPEDYVHRIGRTGRAGRSGQAFTLASR 351

Query: 693 ITKSIQLAID 702
             +    AI+
Sbjct: 352 SDERSLSAIE 361


>gi|119475746|ref|ZP_01616099.1| probable ATP-dependent RNA helicase [marine gamma proteobacterium
           HTCC2143]
 gi|119451949|gb|EAW33182.1| probable ATP-dependent RNA helicase [marine gamma proteobacterium
           HTCC2143]
          Length = 451

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 78/203 (38%), Gaps = 23/203 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP--VEIRSARTQVEDVYDEINLA--- 578
            TI  S  P    L     +  E + + +     P  + + S   Q +D+  ++ LA   
Sbjct: 169 NTIASSCNPERQNLLFSASLKHEGLGKISKSFRDPVAIAVGSPDHQHQDICQQLVLADTI 228

Query: 579 ------------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
                        +Q  + L+   T+   + L+  L  + ++V Y+H ++   +R +++ 
Sbjct: 229 KHKEKLVEALIDEEQAQKTLVFCNTRVQCQQLSHLLRYKKMKVGYIHGDISQNDRKQVMN 288

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SK 685
             R G   VLV  ++   GLDI    LV   +       +S    +  +GR  R     K
Sbjct: 289 QFRQGGIAVLVATDVAARGLDIKGVDLVVNFN-----IAQSGDDHLHRVGRTGRAGEQGK 343

Query: 686 VILYADTITKSIQLAIDETTRRR 708
            I   D+   +   +I+   + R
Sbjct: 344 AITLIDSNEWNQMSSIERYLKFR 366


>gi|113971754|ref|YP_735547.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113886438|gb|ABI40490.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 622

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 9/153 (5%)

Query: 559 VEIRSARTQVEDVYDEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           +E R  +    +  + +      +    I++ V T+    +L E L  R      +H ++
Sbjct: 219 IEQRFVQVSQHNKLEALVRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDM 278

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
               R   +  L+ GK D+L+  ++   GLD+   G V   D           + +  IG
Sbjct: 279 NQQARERAVEQLKSGKLDILIATDVAARGLDVERIGHVVNYD-----IPYDTEAYVHRIG 333

Query: 677 RAARNVNSK-VILYADTITKSIQLAIDE-TTRR 707
           R  R   +   IL+  +    +   I+  T  R
Sbjct: 334 RTGRAGRTGMAILFVTSREMRMLRTIERATNSR 366


>gi|23010493|ref|ZP_00051162.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 407

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 64/190 (33%), Gaps = 18/190 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-----QIIRPTGLVDPPVEIRSARTQVE-----DVYD 573
            T+  SAT    E+E+   + +      ++ RP+      +E R   T  E      V  
Sbjct: 93  QTLFFSAT-MPPEIERLADMFLHNPQRVEVARPSSTATT-IEQRLVATGAEGHEKRKVLR 150

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +  +A +    ++    KR    L   L         +H ++    R+  +   R G+ 
Sbjct: 151 HLIRSANELQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGET 210

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADT 692
            +LV  ++   GLDIP    V   D             +  IGR  R          A  
Sbjct: 211 PLLVASDVAARGLDIPAVSHVFNFDV-----PHHPEDYVHRIGRTGRAGRAGHAFTLASR 265

Query: 693 ITKSIQLAID 702
             +    AI+
Sbjct: 266 ADERSLAAIE 275


>gi|326777924|ref|ZP_08237189.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658257|gb|EGE43103.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 521

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 17/157 (10%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q  D Y      A +  R+++ + TK   + LT++L    +R   +H      +R   + 
Sbjct: 302 QGADKYATTTEIAARDGRVIMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLE 361

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             + G   VLV  N+   G+ +    LV  +D   +         +   GR AR   S  
Sbjct: 362 RFKTGHVTVLVATNVAARGIHVDNLDLVVNVDPPSD-----HKDYLHRGGRTARAGESGS 416

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           ++                 +RRE          I PQ
Sbjct: 417 VVTLVLP-----------NQRREMTRLM-ADAGITPQ 441


>gi|291434996|ref|ZP_06574386.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291337891|gb|EFE64847.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 497

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 79/224 (35%), Gaps = 39/224 (17%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            + + GF LP  +D       +        ++ SAT             V+Q++R   L 
Sbjct: 210 QMCDLGF-LPQVVDVLDQVHPD-----GQRMLFSAT---------LDRDVDQLVRRC-LH 253

Query: 556 DPPVE-IRSARTQV------------EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           DP V  +  +   V             D Y      A +  R+LL + TK   + LT +L
Sbjct: 254 DPVVHSVDPSAGTVTTMEHHVLVVHGPDRYAVTTEIAARDGRVLLFLDTKHAVDQLTRHL 313

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
               +    +HS     +R   +   + G+  VLV  N+   GL + +  LV  +D    
Sbjct: 314 RASGVHAGALHSGKSQPQRTRTLAQFKNGQLTVLVATNVAARGLHVDDLDLVVNVDP--- 370

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
                    +   GR AR   S  ++      +       ET+R
Sbjct: 371 --PTDPKDYVHRAGRTARAGESGSVVTLVLSGQR-----RETSR 407


>gi|218131071|ref|ZP_03459875.1| hypothetical protein BACEGG_02675 [Bacteroides eggerthii DSM 20697]
 gi|217986775|gb|EEC53108.1| hypothetical protein BACEGG_02675 [Bacteroides eggerthii DSM 20697]
          Length = 428

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 75/189 (39%), Gaps = 27/189 (14%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           ++      TI+ SAT                 E++       E+I++   +         
Sbjct: 175 KFLPKERQTIMFSATMPAKIQQLAKSILNNPAEVKLAVSKPAEKIVQAAYVC-------- 226

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q +        A Q   R+++   +K   +++T+ L +  + V  MHS+++  +R E
Sbjct: 227 YENQ-KLGIIRSLFAEQTPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREE 285

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++ + + G+ ++LV  +++  G+DI +  LV   D             +  IGR AR  N
Sbjct: 286 VMYEFKAGRINILVATDIVARGIDIDDIRLVINYDV-----PHDSEDYVHRIGRTARANN 340

Query: 684 SKVILYADT 692
             V L    
Sbjct: 341 DGVALTFVN 349


>gi|182437304|ref|YP_001825023.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178465820|dbj|BAG20340.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 521

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 17/157 (10%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q  D Y      A +  R+++ + TK   + LT++L    +R   +H      +R   + 
Sbjct: 302 QGADKYATTTEIAARDGRVIMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLE 361

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             + G   VLV  N+   G+ +    LV  +D   +         +   GR AR   S  
Sbjct: 362 RFKTGHVTVLVATNVAARGIHVDNLDLVVNVDPPSD-----HKDYLHRGGRTARAGESGS 416

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           ++                 +RRE          I PQ
Sbjct: 417 VVTLVLP-----------NQRREMTRLM-ADAGITPQ 441


>gi|113195544|ref|NP_001037780.1| probable ATP-dependent RNA helicase DDX52 [Danio rerio]
 gi|109150086|gb|AAI17611.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Danio rerio]
 gi|182892172|gb|AAI65190.1| Ddx52 protein [Danio rerio]
          Length = 606

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +   A +L   L    I V  +H++    +R  ++   R GK  VL+   LL  
Sbjct: 417 VLVFVQSIDRARELYHELVYEGINVDVIHADRTQQQRDNVVSSFRSGKIWVLICTALLAR 476

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAI 701
           G+D     LV   D     F  S    I  IGR  R  +  K + +     K +  +I
Sbjct: 477 GIDFKGINLVINYD-----FPTSAVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLLRSI 529


>gi|70949647|ref|XP_744215.1| helicase  [Plasmodium chabaudi chabaudi]
 gi|56524075|emb|CAH74440.1| helicase, truncated, putative [Plasmodium chabaudi chabaudi]
          Length = 186

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   +    ++  RI++ V TKR A+ +T+ L    +    +H + K  ER  ++ D +
Sbjct: 7   NLKSLLQRIFKENDRIIVFVETKRSADFITKALRLEGMPALCIHGDKKQDERRWVLNDFK 66

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GK  +L+  ++   GLDI +   V   D     F       +  IGR  R         
Sbjct: 67  TGKSPILIATDVASRGLDIKDVKFVINYD-----FPNQIEDYVHRIGRTGRAGAHGASFT 121

Query: 690 ADTITK 695
             T  K
Sbjct: 122 FLTSDK 127


>gi|85716308|ref|ZP_01047281.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
 gi|85696824|gb|EAQ34709.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
          Length = 482

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSA-------RTQV------- 568
            T+  +AT    E+ +     +    R        +E+ R A       ++QV       
Sbjct: 179 QTLFFTAT-MPNEIRRVTDAFLHNPQR--------IEVSRPATTAATVTQSQVSCSREPH 229

Query: 569 --EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
              ++   +   A++    ++    KR    + + L +    V  +H ++    R   + 
Sbjct: 230 EKRELLRHLLREAKELKNAIIFCNRKRDVAIVYKSLQKHGFSVGALHGDMDQSARTASLD 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK- 685
             R G+  +LV  ++   GLDIPE   V   D             +  IGR  R   +  
Sbjct: 290 QFRKGELPLLVASDVAARGLDIPEVSHVLNFDV-----PHHPDDYVHRIGRTGRAGRTGT 344

Query: 686 VILYADTITKSIQLAID 702
            I            AI+
Sbjct: 345 AITIVCPADFKSLAAIE 361


>gi|145219994|ref|YP_001130703.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206158|gb|ABP37201.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeovibrioides DSM
           265]
          Length = 598

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 87/227 (38%), Gaps = 15/227 (6%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA----RTQVEDVYDEIN 576
              + SAT   P     ++      E  I+        +  R        +++ +   + 
Sbjct: 186 QVALFSATMPAPIRRIAQKYLNDPAEVTIQAKTTTVDTIRQRYWIVGGSHKIDILTRILE 245

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +    G  +++ V TK M  ++ E L  R      ++ ++   +R   I  L+ G  +++
Sbjct: 246 VEPFDG--MIIFVRTKTMTLEIAEKLQARGYSAAALNGDMVQQQRERTIDQLKSGALNIV 303

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           +  ++   GLD+     V   D           S +  IGR  R   S   IL+     +
Sbjct: 304 IATDVAARGLDVERISHVINYD-----IPSDTESYVHRIGRTGRAGRSGEAILFVSPRER 358

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           ++  +I+  TR++ + +E      IN + + +    + D I  ED A
Sbjct: 359 NMLSSIERATRKKIELMELPSTEIINDKRIAKFKQRITDTIAAEDLA 405


>gi|71030100|ref|XP_764692.1| RNA helicase-1 [Theileria parva strain Muguga]
 gi|68351648|gb|EAN32409.1| RNA helicase-1, putative [Theileria parva]
          Length = 400

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   T+R  + LT  + E++  V  MH ++   ER  I+R+ R G   VL+  +LL 
Sbjct: 268 QAIIYCNTRRKVDYLTLKMQEKDFTVSSMHGDMGQKERDLIMREFRSGSTRVLITTDLLA 327

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
            G+D+ +  LV   D        S  + I  IGR+ R     V I +          +I+
Sbjct: 328 RGIDVQQVSLVINYD-----LPMSPDNYIHRIGRSGRFGRKGVAINFVTHQDMDTMKSIE 382


>gi|302553973|ref|ZP_07306315.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471591|gb|EFL34684.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 475

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 64/184 (34%), Gaps = 20/184 (10%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
                   +SAT    +         + I R   +  P             +   I  A 
Sbjct: 178 RYMSQPTHISAT-SPDDAGATVANTKQYIYRAHNMDKPE------------MVARILQAE 224

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +GL  ++   TKR A DL + L +R      +H ++    R + +R  R GK DVLV  
Sbjct: 225 GRGL-AMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCT 283

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQ 698
           ++   G+D+     V    + +E     + + +  IGR  R       I   D       
Sbjct: 284 DVAARGIDVEGVTHVINYQSPEE-----EKTYLHRIGRTGRAGAKGTAITLVDWDDIPRW 338

Query: 699 LAID 702
             I+
Sbjct: 339 QLIN 342


>gi|302801267|ref|XP_002982390.1| hypothetical protein SELMODRAFT_116186 [Selaginella moellendorffii]
 gi|300149982|gb|EFJ16635.1| hypothetical protein SELMODRAFT_116186 [Selaginella moellendorffii]
          Length = 577

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 75/205 (36%), Gaps = 15/205 (7%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII----RP 551
            L + GF          L+F+        T++ SAT      E  +G +V+ ++    R 
Sbjct: 309 RLCDSGFEDDIRKVMDHLKFQR------QTLLFSATMPRKIQEFARGALVKPVVVNVARA 362

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
                  V+      Q   +   +    Q    +L+   +K   + + EYL  + + V  
Sbjct: 363 GAASLDVVQQVEYVKQEAKMVYLLECLQQTPPPVLIFCESKGDVDSIYEYLVLKGVEVVS 422

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +H      ER + I   + G+ DVLV  ++  +GLD P    V   D   E       + 
Sbjct: 423 IHGGKDQEERQDAITKFKQGRKDVLVATDVASKGLDFPSIQHVINYDMPSE-----IENY 477

Query: 672 IQTIGRAARNVNSKVILYADTITKS 696
           +  IGR  R   + +        +S
Sbjct: 478 VHRIGRTGRCGKTGIATTFINSKQS 502


>gi|295688310|ref|YP_003592003.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295430213|gb|ADG09385.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
           21756]
          Length = 475

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 80/232 (34%), Gaps = 27/232 (11%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----P 551
            + + GF +P       L            +  SAT    E+ +  G +++  ++    P
Sbjct: 160 QMLDLGFVVPIRKIASQLT------KNRQNLFFSAT-MPSEIGKLAGELLKDPVQVSVAP 212

Query: 552 TGLVDPPVEIR--SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
                  ++ R      Q +        A     R ++   TKR A+ + +YL    I  
Sbjct: 213 QATTVERIDQRVLFIEAQRKRPLLAELFADSSFSRTIVFTRTKRGADRVAKYLNAAGIEA 272

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H +    +R   +   + G+   LV  ++   G+D+ +   V   +           
Sbjct: 273 ASIHGDKTQGQRERALAAFKAGEMRALVATDIAARGIDVNDVSHVINYE-----LPNVPE 327

Query: 670 SLIQTIGRAARNVNSKVILYAD---------TITKSIQLAIDETTRRREKQL 712
           + +  IGR AR     + +             I K+ +  I    RR +KQL
Sbjct: 328 AYVHRIGRTARKGKDGIAISFCADDERNLLKDIQKATRQTIPAFDRRNDKQL 379


>gi|223056241|gb|ACM80366.1| vasa [Patiria miniata]
          Length = 730

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 69/183 (37%), Gaps = 19/183 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQVEDVYDE 574
             ++ SAT    E++Q     +E  +  T          +    +E+     + E + + 
Sbjct: 466 QCLMFSAT-FPQEVQQKAAEYLEDYLFLTVGRVGGATPDITQTIIEVGKYDKK-EKLSEM 523

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +        R L+   TKR A+ L   L + ++    +H + +  ER E + D R G+  
Sbjct: 524 LMN--NPDERTLVFTETKRGADFLATCLCQESLPATSIHGDREQREREEALADFRSGRAR 581

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           + V  ++   GLDI     V   D        S    +  IG   R  N  K   + D +
Sbjct: 582 ISVATSVAARGLDISGVKHVVNYD-----MPSSIEEYVHRIGWTGRVGNLGKATSFYDAM 636

Query: 694 TKS 696
           + S
Sbjct: 637 SDS 639


>gi|163801279|ref|ZP_02195178.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4]
 gi|159174768|gb|EDP59568.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4]
          Length = 472

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 87/253 (34%), Gaps = 27/253 (10%)

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           Q+  +   +  R     + GF      D R  +  +    +   ++ SAT      +  +
Sbjct: 147 QLEVLVLDEADRM---LDMGFI----RDIR--KILDLLPKQRQNLLFSATFSDEIRDLAK 197

Query: 542 GII---VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAE 596
           G++   VE  + P       VE     +  +     +    ++G   ++L+   TK  A 
Sbjct: 198 GLVNNPVEISVNPANSTARTVEQSIYPSDAKKKAPMLVKLIKEGDWRQVLVFTRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            L ++L +  +    +H       R + + D + G   VLV  ++   G+DIP+   V  
Sbjct: 258 RLAKFLIDEKLPAAAIHGNKSQSARTKALADFKSGAIRVLVATDIAARGIDIPQLPQVVN 317

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSIQLAIDETTRRREKQLE-- 713
            +  K          +  IGR  R     K I     +      AI+     R  Q    
Sbjct: 318 FELPKV-----AEDYVHRIGRTGRAGEMGKAISLVSALEAPELFAIE-----RLIQQLLP 367

Query: 714 HNKKHNINPQSVK 726
             +     P +V 
Sbjct: 368 RKELAGFAPTNVV 380


>gi|319424978|gb|ADV53052.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 635

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 72/196 (36%), Gaps = 23/196 (11%)

Query: 531 TPGSWELEQCQGIIVEQIIR-PTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQG----- 582
           TP   +L      + EQI R     +  PV +R   +Q  VE +       +Q       
Sbjct: 176 TPSERQLALFSATMPEQIKRVANQHLRSPVHVRIESSQTTVESIEQRFVQVSQHNKLEAL 235

Query: 583 ---------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                      +++ V T+    +L E L  R      +H ++    R   +  L+ GK 
Sbjct: 236 VRVLEVENTEGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKL 295

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
           D+L+  ++   GLD+   G V   D           + +  IGR  R   +   IL+  +
Sbjct: 296 DILIATDVAARGLDVERIGHVVNYD-----IPYDAEAYVHRIGRTGRAGRTGMAILFVTS 350

Query: 693 ITKSIQLAIDETTRRR 708
               +   I+ +T  R
Sbjct: 351 REMRMLRTIERSTNSR 366


>gi|147921542|ref|YP_684642.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
 gi|110620038|emb|CAJ35316.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
          Length = 497

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 85/234 (36%), Gaps = 35/234 (14%)

Query: 522 RPTTIVVSATPGS--------WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
           R  T++ SAT           +  +       E+ I     V   +E+   + + E +  
Sbjct: 175 RRQTLLFSATLSPPVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEM-PEKQKFEALTR 233

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            ++   ++    ++ V T+    +L + L ER      +H ++   +R   +   + G+ 
Sbjct: 234 LLDQ--EKPELAIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEV 291

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
            +LV  ++   GLDI     V   D  ++       S +  IGR  R  N+     +   
Sbjct: 292 SILVATDVAARGLDIQGVTHVYNFDIPRD-----PDSYVHRIGRTGRAGNAGTATTFVTP 346

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQ-------SVKEKIMEVIDPILLE 739
             K+   AI++              H I  +       S ++ I  VI+ I  E
Sbjct: 347 KDKTALEAIEQA-----------IDHQITSKPAPGGAESTEKNIEAVIEKIRGE 389


>gi|169779864|ref|XP_001824396.1| ATP-dependent RNA helicase dhh1 [Aspergillus oryzae RIB40]
 gi|91206577|sp|Q2U5A2|DHH1_ASPOR RecName: Full=ATP-dependent RNA helicase dhh1
 gi|83773136|dbj|BAE63263.1| unnamed protein product [Aspergillus oryzae]
          Length = 511

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 75/226 (33%), Gaps = 35/226 (15%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 215 SFHPKDRQVMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVH- 273

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 274 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNR 325

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 326 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 380

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +          L   E     E Q          PQ++ +K+
Sbjct: 381 LGLAINLINWDDRFNLYKIEQELGTEIQ--------PIPQNIDKKL 418


>gi|327268480|ref|XP_003219025.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 3 [Anolis
           carolinensis]
          Length = 709

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 17/173 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII---------RPTGLVDPPVEIRSARTQVEDVY 572
              T++ SAT    E++      +E+ I             +    V +  +  +   + 
Sbjct: 419 VRQTMMFSAT-FPKEIQMLARDFLEEYIFLAVGRVGSTSENITQKVVWVEDSDKRSFLL- 476

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            ++  A  +    L+ V TK+ A+ L ++L+        +H +    +R E +   R G+
Sbjct: 477 -DLLDATGKDSLTLVFVETKKGADSLEDFLFREGYACTSIHGDRSQRDREEALHQFRSGR 535

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 536 SPILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 583


>gi|322784405|gb|EFZ11376.1| hypothetical protein SINV_10914 [Solenopsis invicta]
          Length = 626

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 17/230 (7%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D  H  +  +S            + + GF      D R + F  +   R  T++ SAT
Sbjct: 328 LMDMLHKKMVTLSVCRYLCMDEADRMIDMGFE----EDVRTI-FSFFRGQR-QTLLFSAT 381

Query: 532 PGSWELEQCQGIIVEQIIRPTG-----LVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                    +  +V+ +    G      ++   E+   + Q   +   +    +    +L
Sbjct: 382 MPKRIQNFARSALVKPVTINVGRAGAASMNVVQEVEYVK-QEAKIVYLLECLQKTAPPVL 440

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +    KR  + + EYL  + +    +H  +   ER   +   R G+ DVLV  ++  +GL
Sbjct: 441 IFAEKKRDVDAIHEYLLIKGVEAVAIHGGIDQEERSRSVEAFRAGRKDVLVATDVASKGL 500

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           D  E   V   D           + +  IGR  R+  + +          
Sbjct: 501 DFAEVQHVINYD-----MPDDVENYVHRIGRTGRSGRTGIATTFINKAND 545


>gi|297620744|ref|YP_003708881.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044]
 gi|297376045|gb|ADI37875.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044]
          Length = 439

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 95/263 (36%), Gaps = 47/263 (17%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +YI + ++      +++  +I  +   D      + + GF  P        +  
Sbjct: 131 TPGRLIDYINQKAI------NLSAIEILVLDEADR-----MLDMGFIEP------VEKIA 173

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
                   T++ SAT     L     ++ E +          + I S +T+ E++  +++
Sbjct: 174 AATPSSRQTLLFSATMQGSVLNLSNRLLNEPMD---------IVIHSEKTKHENITQKLH 224

Query: 577 LAAQQGLR---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
                  +                ++   TKR A  L   L+++ +    +H ++   +R
Sbjct: 225 YVDGLQHKNQLLEHILNDDVVKHAIVFTSTKRHASQLVFELHDKGLLAGALHGDMSQRQR 284

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
              I  LR GK  VLV  ++   G+D+     V   D       R+    +  IGR  R 
Sbjct: 285 SRTIAQLRTGKIKVLVATDVAARGIDVQNITHVINFD-----LPRNVEDYVHRIGRTGRA 339

Query: 682 VNSK-VILYADTITKSIQLAIDE 703
             +   + +A     S+   I+E
Sbjct: 340 GAAGTALSFASGKDTSLVKKIEE 362


>gi|297845068|ref|XP_002890415.1| hypothetical protein ARALYDRAFT_472328 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336257|gb|EFH66674.1| hypothetical protein ARALYDRAFT_472328 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 827

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 68/180 (37%), Gaps = 13/180 (7%)

Query: 524 TTIVVSAT-PGSWE--LEQCQGIIVEQIIRPTGLVDP----PVEIRSARTQVEDVYDEIN 576
            T++ SAT P   E    +     VE  +    +V+      VE+R    +   + + + 
Sbjct: 374 QTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFFRLLELLG 433

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              ++G +IL+ V ++   + L   + + +     +H      +R   I D +    ++L
Sbjct: 434 EWYEKG-KILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKSNVCNLL 492

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ E  LV   DA            +  +GR  R       +   +   +
Sbjct: 493 IATSVAARGLDVKELELVVNFDA-----PNHYEDYVHRVGRTGRAGRKGCAVTFISEDDA 547


>gi|221113161|ref|XP_002160326.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX41
           [Hydra magnipapillata]
          Length = 605

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 17/212 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D+    F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 332 RMIDMGFE-----DDVRTIFSYFKGQR-QTLLFSATMPKKIQNFARSALVQPVTVNVGRA 385

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + Q E +   +    +    +L+    K   +D+ EYL  + +   
Sbjct: 386 GAASLDIIQEVEYVK-QEEKILFLLKCLQKTAPPVLIFAEKKSDVDDIHEYLLLKGVEAV 444

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H +    ER   +   R  K DVLV  ++  +GLD P    V   D           +
Sbjct: 445 AIHGDKAQEERHRSVTQFRERKKDVLVATDVASKGLDFPNIQHVINYD-----MPDDIEN 499

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            +  IGR  R+  +              + +D
Sbjct: 500 YVHRIGRTGRSGKTGYATTFINKNCEESVLMD 531


>gi|195480298|ref|XP_002101215.1| GE17497 [Drosophila yakuba]
 gi|194188739|gb|EDX02323.1| GE17497 [Drosophila yakuba]
          Length = 962

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 23/169 (13%)

Query: 537 LEQCQGIIVEQII-------RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
           +       + QI+       +P  LV    EI   +            +A  G +I++ V
Sbjct: 452 MNLSANHNIRQIVEICTEMEKPQRLVRLLNEIAPTKN-----------SANNGNKIIIFV 500

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            TK   ED+ + +         +H +    ER  +++D R GK ++L+  ++   GLD+ 
Sbjct: 501 ETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVE 560

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           +   V   D     +  S  + +  IGR  R           T   + Q
Sbjct: 561 DLQYVINYD-----YPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQ 604


>gi|194897089|ref|XP_001978588.1| GG17597 [Drosophila erecta]
 gi|190650237|gb|EDV47515.1| GG17597 [Drosophila erecta]
          Length = 955

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 23/169 (13%)

Query: 537 LEQCQGIIVEQII-------RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
           +       + QI+       +P  LV    EI   +            +A  G +I++ V
Sbjct: 454 MNLSANHNIRQIVEICTEMEKPQRLVRLLNEIAPTKN-----------SANNGNKIIIFV 502

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            TK   ED+ + +         +H +    ER  +++D R GK ++L+  ++   GLD+ 
Sbjct: 503 ETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVE 562

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           +   V   D     +  S  + +  IGR  R           T   + Q
Sbjct: 563 DLQYVINYD-----YPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQ 606


>gi|170738843|ref|YP_001767498.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168193117|gb|ACA15064.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 1098

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 3/157 (1%)

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVV--SSVSCIYGIGSVESYSQM 293
           A  P  D      +S +      R    R L E     +V  ++ + I  +   E+++Q 
Sbjct: 65  AVYPAWDCLPGDRTSPSRGAMGARAGVLRWLSEPAPPAIVLTTAPALIQRVPPPETWAQA 124

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
            V L++G+ VE + L ++L +  Y   +     G   + G + E+FP+    V  RV   
Sbjct: 125 RVLLRVGEQVEAEALEAALTRLGYIPDERVDEPGEIALRGRTFEVFPA-AAPVPCRVEHE 183

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP 390
              I  I  + P+T + +     + I   +  +    
Sbjct: 184 DGHITAIRSYDPVTQRSLGEAAELLIDPATELILGPD 220



 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 59/152 (38%), Gaps = 15/152 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLA 578
             + ++ATP    L+     + +  +  T    PPV  R  RT V     E V   +   
Sbjct: 715 HVLTLTATPIPRTLQSALVGLQDLSVIAT----PPVVRRPIRTVVAPFDPETVRAALTRE 770

Query: 579 AQQGLRILLTVLTKR----MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            ++G +  +          M   L   + + ++ V   H E+      E +     G+ D
Sbjct: 771 HRRGGQSFVVCPRIADLAPMEARLRAIVPDLSLAVA--HGEMPPAAMDEAMVRFAEGEGD 828

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           VL+  N++  GLD+P    + +   ++ G  +
Sbjct: 829 VLLATNIIESGLDVPRANTMLVWHPERFGLAQ 860


>gi|147779855|emb|CAN61608.1| hypothetical protein VITISV_040122 [Vitis vinifera]
          Length = 413

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 377 GVAINFVTKDDERMLFDIQR 396


>gi|148226262|ref|NP_001080283.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Xenopus laevis]
 gi|27924277|gb|AAH44972.1| Pl10-prov protein [Xenopus laevis]
          Length = 697

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 60/170 (35%), Gaps = 11/170 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD------EI 575
              T++ SAT         +  + E I    G V    E  + +    +  D      ++
Sbjct: 416 VRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDL 475

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +
Sbjct: 476 LNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKCPI 535

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 536 LVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 580


>gi|71082870|ref|YP_265589.1| ATP-dependent RNA helicase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71061983|gb|AAZ20986.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 582

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 78/190 (41%), Gaps = 10/190 (5%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQV--EDVYD 573
           ++      T++ SAT     +   +  + E     TG    P+ +I+    QV  E+ YD
Sbjct: 170 KFVPKDHQTLLFSATLPQNIVRISERYLNEPQRISTGSTSVPIAKIKQETLQVFKENKYD 229

Query: 574 EI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++ +    +   IL+ V TKR A+ + + L E       +H +++  +R  +I   R G 
Sbjct: 230 QLVDQFIARKGSILVFVKTKRGADKMVKRLKEEGHSADAIHGDLRQSKRDRVITSFRKGL 289

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
             +L+  ++   GLDIP    V   D       +     +  IGR AR       + +  
Sbjct: 290 KRILIATDVAARGLDIPLIQHVINFD-----LPQVPEDYVHRIGRTARAGTEGSALTFLT 344

Query: 692 TITKSIQLAI 701
              +S+   I
Sbjct: 345 PDDRSMWNEI 354


>gi|120600329|ref|YP_964903.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146291742|ref|YP_001182166.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120560422|gb|ABM26349.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145563432|gb|ABP74367.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 640

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 72/196 (36%), Gaps = 23/196 (11%)

Query: 531 TPGSWELEQCQGIIVEQIIR-PTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQG----- 582
           TP   +L      + EQI R     +  PV +R   +Q  VE +       +Q       
Sbjct: 176 TPSERQLALFSATMPEQIKRVANQHLRSPVHVRIESSQTTVESIEQRFVQVSQHNKLEAL 235

Query: 583 ---------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                      +++ V T+    +L E L  R      +H ++    R   +  L+ GK 
Sbjct: 236 VRVLEVENTEGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKL 295

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
           D+L+  ++   GLD+   G V   D           + +  IGR  R   +   IL+  +
Sbjct: 296 DILIATDVAARGLDVERIGHVVNYD-----IPYDAEAYVHRIGRTGRAGRTGMAILFVTS 350

Query: 693 ITKSIQLAIDETTRRR 708
               +   I+ +T  R
Sbjct: 351 REMRMLRTIERSTNSR 366


>gi|291405635|ref|XP_002719293.1| PREDICTED: ATP-dependent RNA helicase ROK1 [Oryctolagus cuniculus]
          Length = 599

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 403 MRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 462

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  +  K + +  
Sbjct: 463 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGHKGKAVTFFT 517

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 518 EDDKPLLRSV 527



 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 75/200 (37%), Gaps = 32/200 (16%)

Query: 34  QLEVDKTMVADAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSSISMSEKQTRE 93
           QL+ ++   A  M   R +  K RK     + + +   T      Q  SS+    + T+ 
Sbjct: 67  QLQDEEKEAATHMEGKREQNKKKRKKVDSEITLQEEGTT-----IQWTSSVEAKIEDTK- 120

Query: 94  ISEQTMTPSVQALARLIQSDNPLLKNG---KIWTPHRSWSINNHSKDITFFQMQTDY--- 147
            S+     +   L  L +     ++N     +        I    +    +++ +     
Sbjct: 121 -SKGHTKLTSGKLEHLRKEKINFVRNKHKIHVQGTDLPDPITTFQQLDQEYKINSQLLQN 179

Query: 148 -------HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMA-KVIEAMQRPA--- 196
                   P+  Q  AI  +L G     +  L    TGSGKT   +  ++  +++P    
Sbjct: 180 ILDAGFQMPTPIQMQAIPVMLHG-----RELLASAPTGSGKTLAFSIPILMHLKQPTNKG 234

Query: 197 ---IVMAPNKILAAQLYSEF 213
              ++++P + LA+Q++ E 
Sbjct: 235 FRALIISPTRELASQIHREL 254


>gi|170767442|ref|ZP_02901895.1| ATP-dependent RNA helicase SrmB [Escherichia albertii TW07627]
 gi|170123776|gb|EDS92707.1| ATP-dependent RNA helicase SrmB [Escherichia albertii TW07627]
          Length = 444

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 90/253 (35%), Gaps = 17/253 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT  G    +  + ++ + + +          +I     + +D+  +  L  
Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DIP+   V   D  + G      + +  IGR AR       +      
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSG-----DTYLHRIGRTARAGRKGTAISLVEAH 355

Query: 695 KSIQLA-----IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
             + L      I+E  + R       K    + +   +   +V+     +  A       
Sbjct: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQSGKPSKKVLAKRAEKKKAKEKEKPR 415

Query: 750 AQQLSLSKKKGKA 762
            ++     K    
Sbjct: 416 VKKRHRDTKNIGK 428


>gi|169853643|ref|XP_001833501.1| DEAD-box protein abstrakt [Coprinopsis cinerea okayama7#130]
 gi|116505540|gb|EAU88435.1| DEAD-box protein abstrakt [Coprinopsis cinerea okayama7#130]
          Length = 619

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 84/248 (33%), Gaps = 32/248 (12%)

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE-------WNCLRP 523
           + V      I  +        + K    +   R+        L FE+       +   + 
Sbjct: 320 IVVATPGRLIDMLEKKRFTFNNCKYLCMDEADRM------IDLGFEDDVRNIMSFFKRQR 373

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLV--------DPPVEIRSARTQVEDVYDE 574
            T++ SAT P     ++ Q    E +I+P  +            +++     Q   +   
Sbjct: 374 QTLLFSATMP-----KKIQDFATESLIKPILVNVGRAGAANLDVLQVVEYVKQEAKMVYL 428

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +    +    +++    K   +D+ EYL  + +    +H      ER   I+  + G  D
Sbjct: 429 LECLQKTPPPVIIFSENKNEVDDIQEYLLLKGVEAVAIHGSKTQEERQYAIKAFKSGAKD 488

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           V+V   +  +GLD  +   V I    KE         +  IGR  R+  + +      + 
Sbjct: 489 VMVASGVASKGLDFNDIQHVIIFSMPKE-----IEDYVHQIGRTGRSGKTGIATTFVNMN 543

Query: 695 KSIQLAID 702
              Q  +D
Sbjct: 544 TPEQTLLD 551


>gi|242096928|ref|XP_002438954.1| hypothetical protein SORBIDRAFT_10g028940 [Sorghum bicolor]
 gi|241917177|gb|EER90321.1| hypothetical protein SORBIDRAFT_10g028940 [Sorghum bicolor]
          Length = 414

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 205 YDIFQLLPAKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE 264

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 265 DWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 322

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 323 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 377

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 378 GVAINFVTRDDERMLFDI 395


>gi|227891791|ref|ZP_04009596.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227866356|gb|EEJ73777.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 499

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 77/191 (40%), Gaps = 11/191 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QI--IRPTGLVDPPVEIRSARTQVEDVYDEINLAA- 579
            T++ SAT     L+  +  +V  QI  I+   L    V+    +T+  + +D +     
Sbjct: 184 QTLLFSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRLID 243

Query: 580 -QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L+  L  R      +H ++    R+ ++R  + G  D+LV 
Sbjct: 244 VQAPELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVA 303

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R  +    + +        
Sbjct: 304 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDY 358

Query: 698 QLAIDETTRRR 708
              I++ T++R
Sbjct: 359 LRVIEKLTKKR 369


>gi|158333359|ref|YP_001514531.1| DEAD/DEAH box RNA helicase [Acaryochloris marina MBIC11017]
 gi|158303600|gb|ABW25217.1| DEAD/DEAH box RNA helicase [Acaryochloris marina MBIC11017]
          Length = 574

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 10/189 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +L+ V TK MA +L E L  R      +  ++    R + I  ++ G+ D++V  ++ 
Sbjct: 247 EAMLVFVRTKVMAAELAEKLEARGYSSAVLSGDISQPLREKTIERIKAGRLDIIVATDVA 306

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           + +  IGR  R       IL+  +  K +  +I
Sbjct: 307 ARGLDVERISHVINYD-----IPYDTETYVHRIGRTGRAGRQGDAILFVSSREKRMLRSI 361

Query: 702 DETTRRREKQLEHNKKHNINPQSV---KEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
           ++ TR+  + ++     +I  + +   K+ I + I+   L D     IS   Q+  LS +
Sbjct: 362 EQATRQPIQPMQIPSHADIADRRIVQFKQVITDTIEDQDL-DFFEDLISNYQQEQDLSLR 420

Query: 759 KGKAHLKSL 767
           +  A L  L
Sbjct: 421 EIAASLAYL 429


>gi|294340821|emb|CAZ89216.1| Cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Thiomonas sp. 3As]
          Length = 666

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 73/186 (39%), Gaps = 8/186 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK+  E+L E L  R      ++ +V    R  +++ L+ G+ D+LV  ++   
Sbjct: 249 MIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATDVAAR 308

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     + +  AI+ 
Sbjct: 309 GLDVERISHVVNYD-----IPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIER 363

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID--AQQLSLSKKKGK 761
            TR+   Q++      +N   +   +  + +    E        ++   Q+  +   +  
Sbjct: 364 ATRQPITQMQLPSTEAVNDSRISRFMERITEAREQEGLEDYQRLVERYEQEFDIPAIEIA 423

Query: 762 AHLKSL 767
           A L  +
Sbjct: 424 AALARM 429


>gi|194388512|dbj|BAG60224.1| unnamed protein product [Homo sapiens]
          Length = 544

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 235 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 284

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 285 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 344

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 345 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 379


>gi|149428666|ref|XP_001516184.1| PREDICTED: similar to DDX6 protein [Ornithorhynchus anatinus]
          Length = 444

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D             L    + + L +     L     + S
Sbjct: 203 MIVLDEADKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 251

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ + +    V    ++           + +    Q    I +  
Sbjct: 252 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFC 302

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI 
Sbjct: 303 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 362

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 363 AVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 412


>gi|194468146|ref|ZP_03074132.1| helicase domain protein [Lactobacillus reuteri 100-23]
 gi|194452999|gb|EDX41897.1| helicase domain protein [Lactobacillus reuteri 100-23]
          Length = 443

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 17/204 (8%)

Query: 507 CMDNRPLRFEEWNCLRPT--TIVVSATPGS---WELEQCQGIIVEQIIRPTGLVDPPVEI 561
              N  L +     ++     + ++ATPG     E++  + I+    +R  G + P +++
Sbjct: 215 YAANASLLYATKQAIKKNGGCLYLTATPGDTLLREIKSKRLIVNYLPLRYHGHLLPEIKV 274

Query: 562 RSART--------QVE-DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           R A          Q+   V  ++    ++G R LL V        +   L       R+ 
Sbjct: 275 RLAFGWRRRLERHQLPPQVIQQLQKTLKEGHRFLLFVPHIADLALVKAALQHSFTTFRFA 334

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
                  +R+E ++ +R G +D LV  ++L  G+  PE   V +L AD   F  S ++L+
Sbjct: 335 TVHASDPQRLEKVQKMRDGDYDFLVTTSILERGVTFPEID-VYVLGADDPVF--SSSALV 391

Query: 673 QTIGRAARNVNSKVILYADTITKS 696
           Q  GRA R  +         I  +
Sbjct: 392 QIAGRAGRAQSRPTGRVVFWINCN 415


>gi|330831669|ref|YP_004394621.1| ATP-dependent RNA helicase rhlB [Aeromonas veronii B565]
 gi|328806805|gb|AEB52004.1| ATP-dependent RNA helicase rhlB [Aeromonas veronii B565]
          Length = 416

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 87/253 (34%), Gaps = 34/253 (13%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNR 511
           + +Y        +D     +  I  +   +  R   L   GF         R+P   +  
Sbjct: 132 IIDYFKSK---VID-----LSNIQVVVLDEADRMFDL---GFIKDIRFLFRRMPPATERL 180

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            + F     LR   +       ++E       +  +  + TG+     E+     + + +
Sbjct: 181 SMLFSATLSLRVQEL-------AYEHMNHPEHVQVEPEQMTGVRIKE-ELFYPSNEDKML 232

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                +  +   + ++   TK + ED+  +L     RV  +  +V   +R++I+ D   G
Sbjct: 233 LLLSLMEEEWPEKAIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKG 292

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYA 690
             D+LV  ++   GL IP+   V   D             +  IGR  R   S   I  A
Sbjct: 293 ALDILVATDVAARGLHIPDVTHVFNYD-----LPDDAEDYVHRIGRTGRAGKSGHSISLA 347

Query: 691 DTITKSIQLAIDE 703
                    AI+E
Sbjct: 348 CEDYAFNLPAIEE 360


>gi|320335085|ref|YP_004171796.1| DEAD/DEAH box helicase domain-containing protein [Deinococcus
           maricopensis DSM 21211]
 gi|319756374|gb|ADV68131.1| DEAD/DEAH box helicase domain protein [Deinococcus maricopensis DSM
           21211]
          Length = 604

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 14/190 (7%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++   TKR  ++L   L  R +    +H ++   +R   +   R G+  VLV  ++ 
Sbjct: 241 ERAIVFTRTKREVDELAMELIHRGLEAEALHGDLAQSQRERALGSFRAGRVRVLVATDVA 300

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLA 700
             GLDIPE  LV      +    +   S +   GR  R   +   +++Y +   + ++  
Sbjct: 301 ARGLDIPEIDLVV-----QYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGEREGRELRNL 355

Query: 701 IDETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             +T       ++  ++    P+ V+E       D +   DA      +   +   S+  
Sbjct: 356 EYQT------GVKFEERSIPTPKEVREASARAAADNVKKVDAEMAQPFMAEAERLFSELG 409

Query: 760 GKAHLKSLRK 769
             A  ++L K
Sbjct: 410 LDALARALAK 419


>gi|291406389|ref|XP_002719529.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2
           [Oryctolagus cuniculus]
          Length = 544

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 235 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 284

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 285 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 344

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 345 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 379


>gi|292897893|ref|YP_003537262.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291197741|emb|CBJ44836.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|312170722|emb|CBX78984.1| putative ATP-dependent RNA helicase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 430

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 89/258 (34%), Gaps = 44/258 (17%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNR 511
           L +Y          ++HV +  I  +   +  R   L   GF         R+P+     
Sbjct: 145 LIDY--------AKQNHVNLGAIQVVVLDEADRMFDL---GFIKDIRWLFRRMPAASQRL 193

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELE-----QCQGIIVEQIIRPTGLVDPPVEIRSART 566
            + F      R   +       +  +E     +    I E++  P+       ++R  +T
Sbjct: 194 NMLFSATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELFYPSNEE----KMRLLQT 249

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            +E+         +   R ++   TK   ED+  +L     RV  +  +V   +R+ I+ 
Sbjct: 250 LIEE---------EWPDRTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD 300

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSK 685
           D   G  D+LV  ++   GL IP    V   D         +   +  IGR  R   N  
Sbjct: 301 DFTKGDVDILVATDVAARGLHIPAVTHVFNYD-----LPDDREDYVHRIGRTGRAGANGH 355

Query: 686 VILYADTITKSIQLAIDE 703
            I  A         AI+E
Sbjct: 356 SISLACEEYALNLTAIEE 373


>gi|294880401|ref|XP_002768997.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
 gi|239872070|gb|EER01715.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
          Length = 689

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 38/217 (17%)

Query: 491 FHRKATLAEYGFR-----------LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           F     + + GF            +PS  D R             + + SAT    E++Q
Sbjct: 364 FDEADRMLDMGFEPQIRRIVEQEDMPSSRDGR------------QSAMFSAT-FPKEIQQ 410

Query: 540 CQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
                +++ I           G +   +      +++ D+Y  +    ++GL  L+ V T
Sbjct: 411 LARDFLKEYIYLTVGRVGSTHGSIKQIMRYVDENSKLRDLYRVLEEQTEEGL-TLVFVET 469

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           KR A+++   L         +H +    ER E ++  + G+  +LV  ++   GLDI   
Sbjct: 470 KRKADEIENMLRRDRYPATSIHGDRSQWEREEALKAFKSGELPILVATDVAARGLDISHV 529

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            LV   D        +    +  IGR  R  N    +
Sbjct: 530 NLVINYD-----LPNNIDDYVHRIGRTGRAGNLGTAI 561


>gi|217073124|gb|ACJ84921.1| unknown [Medicago truncatula]
          Length = 413

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 82/211 (38%), Gaps = 25/211 (11%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLDTLCDLYETLAIT--QSVVFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHN 715
            V +   T      L+        + Q  +N
Sbjct: 377 GVAINFVTTDDERMLS--------DIQKFYN 399


>gi|226494636|ref|NP_001147596.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays]
 gi|195612416|gb|ACG28038.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays]
          Length = 768

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 75/188 (39%), Gaps = 16/188 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT--------GLVDPPVEIRSART-QVEDVYDE 574
            T++ SAT   +++E+    I+   IR T          +   V +  +   ++  + ++
Sbjct: 399 QTLLFSAT-MPYKVERLAREILTDPIRVTVGQVGGANEDIKQVVNVIPSDAEKMPWLLEK 457

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +      G  +L+    K   +++   L +R  R+  +H +     R+E ++  + G + 
Sbjct: 458 LPGMIDDGD-VLVFASKKARVDEIERELNQRGFRIAALHGDKDQASRMETLQKFKSGTYH 516

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   GLDI     V   D  KE  +      I  IGR  R  +     Y     
Sbjct: 517 VLVATDVAARGLDIKSIKTVVNFDIAKEMDMH-----IHRIGRTGRAGDKDGTAYTLITQ 571

Query: 695 KSIQLAID 702
           K  + A +
Sbjct: 572 KEARFAGE 579


>gi|167465104|ref|ZP_02330193.1| DEAD/DEAH box helicase domain protein [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 376

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 96/260 (36%), Gaps = 22/260 (8%)

Query: 524 TTIVVSAT--PGSWELEQ-------CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT  P   +L            +I +Q+  P  +    +E+     Q  +    
Sbjct: 92  HTMLFSATMPPNIQKLAHQFLRNPQHVSVIPKQVSAPL-IAQAYIEVH--EKQKFEALSR 148

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +    +     ++   TKR  ++L+E L +R      +H ++   +R  ++R  R G  D
Sbjct: 149 LLD-MEAPELAIIFGRTKRRVDELSEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSID 207

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           VLV  ++   GLD+     V   D       +   S +  IGR  R         +    
Sbjct: 208 VLVATDVAARGLDVSGVSHVINFD-----LPQDPESYVHRIGRTGRAGKEGTAWTFVTPR 262

Query: 694 TKSIQLAIDETTRR---REKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                  I++ TR    R+      +      +   E+I+E+++    ++     I +  
Sbjct: 263 EIDHLHFIEKVTRHKISRKPLPSLAEAMEGKQKMTAERILELMEKDNHQEFKGVAIQLLE 322

Query: 751 QQLSLSKKKGKAHLKSLRKQ 770
           Q  S++       L +  K+
Sbjct: 323 QYDSVNLLAAALKLLTGEKK 342


>gi|317503390|ref|ZP_07961434.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
 gi|315665485|gb|EFV05108.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
          Length = 542

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 86/224 (38%), Gaps = 28/224 (12%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGSWE-----LEQCQGIIVEQII 549
            + + GF       +  L+  +       TI+ SAT P   E     L +   +I   + 
Sbjct: 161 RMLDMGF------SDDILKIAKKLPQSCQTIMFSATMPDKIEELAKTLLKNPKVIKLAVS 214

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
           +P   +     +    TQ   +  +I  +     R+++   +K   + +   L  ++I  
Sbjct: 215 KPAEKIKQSAYV-CYETQKMGIIKDIFKSDDLK-RVIIFCGSKMKVKQVAGALQRKHINC 272

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             MHS++    R E++   + G+FDVLV  +++  G+DI +  +V   D           
Sbjct: 273 GEMHSDLDQAMRDEVMFKFKSGQFDVLVATDIVARGIDIDDISMVINYDV-----PHDAE 327

Query: 670 SLIQTIGRAARNVNSKV---------ILYADTITKSIQLAIDET 704
             +  IGR AR               I Y   I K +   +D+T
Sbjct: 328 DYVHRIGRTARAAREGSAITFVSDDDIYYFQLIEKFLGKQVDKT 371


>gi|309360868|emb|CAP30554.2| hypothetical protein CBG_11408 [Caenorhabditis briggsae AF16]
          Length = 559

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 65/162 (40%), Gaps = 14/162 (8%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++         +E  + + ++ ++ + I    +   + ++ V TKR A+
Sbjct: 340 LELAANHNITQVV-------DVLEEHAKQAKLMELLNHIMNQKEC--KTIIFVETKRKAD 390

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +LT  +         +H +    ER  ++++ + GK  +L+  ++   GLD+ +   V  
Sbjct: 391 ELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKMPILLATDVAARGLDVDDIKFVIN 450

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            D     +  +    +  IGR  R           T T + +
Sbjct: 451 YD-----YPNNSEDYVHRIGRTGRRDKKGTAYTFFTHTNASK 487


>gi|196016401|ref|XP_002118053.1| hypothetical protein TRIADDRAFT_33552 [Trichoplax adhaerens]
 gi|190579356|gb|EDV19453.1| hypothetical protein TRIADDRAFT_33552 [Trichoplax adhaerens]
          Length = 524

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK+ A+ L E+L         +H +    +R + +R  R G   +LV   +   G
Sbjct: 367 LVFVETKKGADSLQEFLVRMGYYSTAIHGDRSQRDREDALRAFRAGVRPILVATAVAARG 426

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           LDIP    V   D             +  IGR  R  N     
Sbjct: 427 LDIPNVAHVINFD-----LPSDIEEYVHRIGRTGRVGNVGTAT 464


>gi|84995732|ref|XP_952588.1| eukaryotic translation initiation factor 4a [Theileria annulata
           strain Ankara]
 gi|65302749|emb|CAI74856.1| eukaryotic translation initiation factor 4a, putative [Theileria
           annulata]
          Length = 400

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   T+R  + LT  + E++  V  MH ++   ER  I+R+ R G   VL+  +LL 
Sbjct: 268 QAIIYCNTRRKVDYLTLKMQEKDFTVSSMHGDMGQKERDLIMREFRSGSTRVLITTDLLA 327

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
            G+D+ +  LV   D        S  + I  IGR+ R     V I +          +I+
Sbjct: 328 RGIDVQQVSLVINYD-----LPMSPDNYIHRIGRSGRFGRKGVAINFVTHQDMETMKSIE 382


>gi|117647206|ref|NP_001071115.1| probable ATP-dependent RNA helicase DDX4 [Rattus norvegicus]
 gi|2500526|sp|Q64060|DDX4_RAT RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog;
           Short=rVLG
 gi|806464|gb|AAB33364.1| vasa-like gene protein [Rattus sp.]
          Length = 713

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 6/117 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++ V TK+ A+ +  +L +  I    +H + +  ER + + D R GK  VLV  ++
Sbjct: 525 DERPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 584

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
              GLDI     V   +        +    +  IGR  R  N+   I + DT + + 
Sbjct: 585 AARGLDIENVQHVINFN-----LPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDNH 636


>gi|330828264|ref|YP_004391216.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565]
 gi|328803400|gb|AEB48599.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565]
          Length = 407

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 74/202 (36%), Gaps = 18/202 (8%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
             R  T++ SAT     LE+    I++  +       P  E R   TQ   + D+     
Sbjct: 178 RYRKHTMLFSATLEGAGLEKFANEILKDPVELHAEP-PRSERRPI-TQWIHLADDAAHKL 235

Query: 580 Q---------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                     +  + ++ V T+    +L+  L    I   ++  E++  +RIE IR    
Sbjct: 236 ALLTHILKDPETQKAIIFVKTRERLAELSGQLQAAGISCAWIRGEMEQSKRIESIRKFHE 295

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+   L+  ++   G+D+P    V   D             +  IGR  R  N    I  
Sbjct: 296 GEVPFLIATDVAARGIDLPNVSHVINYD-----MPYGADVYVHRIGRTGRAGNRGCAISL 350

Query: 690 ADTITKSIQLAIDE-TTRRREK 710
            +    ++   I+  T  R ++
Sbjct: 351 VEAHDMAMVAKIERYTEERLKR 372


>gi|291297189|ref|YP_003508587.1| DEAD/DEAH box helicase domain-containing protein [Meiothermus ruber
           DSM 1279]
 gi|290472148|gb|ADD29567.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279]
          Length = 556

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 88/248 (35%), Gaps = 24/248 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIR-SARTQVEDVYDEINLA 578
            T++ SAT  +W     +      I    I+   +    V I+     ++  + D +   
Sbjct: 177 QTLLFSATLPTWARRLSERYQKAAIHINVIKDEAISYEEVAIQAPIHNRLSVLSDLLFAY 236

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A    R ++   TK    DL   L  R      +H ++  ++R  ++   R G   VLV 
Sbjct: 237 AP--ERTIVFTSTKAECNDLALGLESRAHSAAPIHGDMGQIDRERVMERFRSGAVSVLVA 294

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDIPE  LV               S +   GR  R   S  ++      +  +
Sbjct: 295 TDVAARGLDIPEVDLVV-----HYRLPDQNESYLHRSGRTGRAGRSGKVVILYGPREKRE 349

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
           L   ET   RE +    + +   P+       EV+       A       +A +  L ++
Sbjct: 350 L---ETLE-RELKRNFKRVNPPTPE-------EVMAAKWAMLARRIAKQPEADK-KLWRE 397

Query: 759 KGKAHLKS 766
           + +  +  
Sbjct: 398 QAERLIAE 405


>gi|227204273|dbj|BAH56988.1| AT3G13920 [Arabidopsis thaliana]
          Length = 398

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 18/194 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 203 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKE 262

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 263 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 320

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 321 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 375

Query: 685 KV-ILYADTITKSI 697
            V I +     + +
Sbjct: 376 GVAINFVTRDDERM 389


>gi|321473370|gb|EFX84337.1| hypothetical protein DAPPUDRAFT_209410 [Daphnia pulex]
          Length = 592

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 97/256 (37%), Gaps = 32/256 (12%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSA-RTQVED 570
            +  T++ SAT  S E+     + + + I+            L    V IR       E 
Sbjct: 192 RKRQTMLFSAT-MSNEVRDLAAVSLNKPIKVFVNNNRDVAFNLRQEFVRIRPNHEGDREA 250

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +     +    ++ V TK +   L   L    IRV  +H  +   +R+E +R  + 
Sbjct: 251 ILCALVCRTFRNH-CMVFVQTKMLCHRLHVQLGLLGIRVGELHGNLSQPQRLEALRKFKE 309

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              D+LV  ++   GLDIP    V            +    I  +GR AR   S V +  
Sbjct: 310 EDIDILVSTDVAARGLDIPGVQTVINY-----TMPPTIERYIHRVGRTARAGRSGVSVSL 364

Query: 691 DTITKSIQLAIDETTRRREKQLEHN-KKHNINPQSVKEK-------IMEVIDPILLEDAA 742
               +  +  + E  +R      +N  K  + P  + EK       I   ++ I+ E+ +
Sbjct: 365 AGEGE--RKVVKEIVKR-----ANNPVKSRLIPNEILEKYKKKLALIDPDVESIITEEKS 417

Query: 743 TTNISIDAQQLSLSKK 758
            + +S    Q++ ++K
Sbjct: 418 ESQLSAMENQINRAEK 433


>gi|291302062|ref|YP_003513340.1| DEAD/DEAH box helicase domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571282|gb|ADD44247.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis
           DSM 44728]
          Length = 557

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           +V   I  A  +GL  ++   TKR  + + + L  R   V  +H ++    R   +R  R
Sbjct: 261 EVLARILQAKDRGL-TIVFSRTKRHTQRVADDLEFRGFAVAAVHGDLGQNARERALRAFR 319

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GK DVLV  ++   GLD+ +   V   D+          + +  IGR  R   + V + 
Sbjct: 320 SGKIDVLVATDVAARGLDVRDVTHVINYDS-----PEDAETYVHRIGRTGRAGATGVAVT 374

Query: 690 ADTITKS 696
             +   +
Sbjct: 375 FVSWEDA 381


>gi|255691877|ref|ZP_05415552.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
 gi|260622430|gb|EEX45301.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
          Length = 421

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 76/193 (39%), Gaps = 28/193 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            T++ SAT                 E++       E+II+   +            Q + 
Sbjct: 182 QTVMFSATMPAKIQQLANTILNNPSEIKLAVSKPAEKIIQAAYVC--------YENQ-KL 232

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                  A +   R+++   +K   +++ + L    + V  MHS+++  +R  ++ + + 
Sbjct: 233 GIIRSLFADEVPERVIIFASSKIKVKEVAKALMAMKLNVGEMHSDLEQAQRETVMHEFKA 292

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+ ++LV  +++  G+DI +  LV   D             +  IGR AR  N  V + +
Sbjct: 293 GRVNILVATDIVARGIDIDDIRLVINFDV-----PHDSEDYVHRIGRTARANNDGVALTF 347

Query: 690 ADTITKSIQLAID 702
                +S   +I+
Sbjct: 348 VSEKEQSNFKSIE 360


>gi|255945213|ref|XP_002563374.1| Pc20g08510 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588109|emb|CAP86180.1| Pc20g08510 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 525

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 75/226 (33%), Gaps = 35/226 (15%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 214 SFHPKDRQVMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVH- 272

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 273 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNR 324

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 325 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 379

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +          L   E     E Q          PQ++ +K+
Sbjct: 380 LGLAINLINWEDRFNLYKIEQELGTEIQ--------PIPQNIDKKL 417


>gi|163839948|ref|YP_001624353.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162953424|gb|ABY22939.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 565

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 68/183 (37%), Gaps = 16/183 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--------DVY 572
              T++ SAT PG       + +     IR     D  +  R  R  V         +V 
Sbjct: 219 VRQTMLFSATMPGPIVAMARRYMTQPTHIRAADPDDEGLTKRDIRQLVYRAHSMDKIEVV 278

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +G R ++   TKR A  + E L ER      +H ++    R + +R  R  K
Sbjct: 279 ARILQARGRG-RTIIFTKTKRTAAKVAEELAERGFASAAIHGDLGQGAREQALRAFRNNK 337

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            DVLV  ++   G+D+ +   V          +  +   +  +GR  R  N    + + D
Sbjct: 338 VDVLVATDVAARGIDVDDVTHVINY-----QCVEDEKIYLHRVGRTGRAGNKGTAVTFVD 392

Query: 692 TIT 694
              
Sbjct: 393 WDD 395


>gi|156847065|ref|XP_001646418.1| hypothetical protein Kpol_2001p67 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380643|sp|A7TGU7|DHH1_VANPO RecName: Full=ATP-dependent RNA helicase DHH1
 gi|156117094|gb|EDO18560.1| hypothetical protein Kpol_2001p67 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 484

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 79/226 (34%), Gaps = 24/226 (10%)

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           LP   +++ L F     L     +V+     +E+     + ++ I +    V+       
Sbjct: 204 LP--KNHQSLLFSATFPLSVKEFMVNHLHKPYEINLMDELTLKGITQYYAFVEEK----- 256

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q     + +    Q     ++   +    E L + + +      Y H+ +K  ER  
Sbjct: 257 ---QKLHCLNTLFSKLQINQ-AIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNR 312

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  + R GK   LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 313 VFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD-----FPKTAETYLHRIGRSGRFGH 367

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +          L   E     E Q          P ++ + +
Sbjct: 368 LGLAINLINWNDRFNLYKIEQELGTEIQA--------IPATIDKSL 405


>gi|162458395|ref|NP_001105396.1| translational initiation factor eIF-4A [Zea mays]
 gi|2341061|gb|AAB67607.1| translational initiation factor eIF-4A [Zea mays]
          Length = 414

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 205 YDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 264

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 265 DWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 322

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 323 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 377

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 378 GVAINFVTRDNERMLFDI 395


>gi|458727|dbj|BAA04482.1| RCK [Homo sapiens]
 gi|189053803|dbj|BAG36055.1| unnamed protein product [Homo sapiens]
          Length = 472

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D             L    + + L +     L     + S
Sbjct: 231 MIVLDEADKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 279

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ + +    V    ++           + +    Q    I +  
Sbjct: 280 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFC 330

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI 
Sbjct: 331 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 390

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 391 AVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 440


>gi|114046038|ref|YP_736588.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113887480|gb|ABI41531.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 622

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 9/153 (5%)

Query: 559 VEIRSARTQVEDVYDEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           +E R  +    +  + +      +    I++ V T+    +L E L  R      +H ++
Sbjct: 219 IEQRFVQVSQHNKLEALVRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDM 278

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
               R   +  L+ GK D+L+  ++   GLD+   G V   D           + +  IG
Sbjct: 279 NQQARERAVEQLKNGKLDILIATDVAARGLDVERIGHVVNYD-----IPYDTEAYVHRIG 333

Query: 677 RAARNVNSK-VILYADTITKSIQLAIDE-TTRR 707
           R  R   +   IL+  +    +   I+  T  R
Sbjct: 334 RTGRAGRTGMAILFVTSREMRMLRTIERATNSR 366


>gi|293602448|ref|ZP_06684894.1| ATP-dependent RNA helicase [Achromobacter piechaudii ATCC 43553]
 gi|292819210|gb|EFF78245.1| ATP-dependent RNA helicase [Achromobacter piechaudii ATCC 43553]
          Length = 597

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 57/149 (38%), Gaps = 15/149 (10%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              +  + ++   TKR A+DL + L ++      +H ++   +R   +  L+ G+  +LV
Sbjct: 241 RDAKLDQAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLSQLQRGQLRILV 300

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   G+D+         D             +  IGR  R   + +     T     
Sbjct: 301 ATDVAARGIDVQGISHAVNFD-----LPMQAEDYVHRIGRTGRAGRNGLAFTLAT----- 350

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVK 726
                 + R + +++EH    +I P+ + 
Sbjct: 351 -----HSERHKVRRIEHYIGQSITPEVIA 374


>gi|260768003|ref|ZP_05876937.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972]
 gi|260616033|gb|EEX41218.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972]
          Length = 540

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 88/264 (33%), Gaps = 37/264 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   ++++           Q+  +   +  R     + GF      D R  +  
Sbjct: 130 TPGRLMDLYNQNAV--------KFDQLEVLVLDEADRM---LDMGFI----RDIR--KIL 172

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDV 571
           E        ++ SAT         +G++   VE  + P       VE  +  A   V+  
Sbjct: 173 ELLPKNRQNLLFSATFSDEIRALAKGLVNDPVEISVSPANSTAKTVEQCVYPAD--VKKK 230

Query: 572 YDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
              +    + G   ++L+   TKR A  L  +L E  I+   +H       R   + + +
Sbjct: 231 APMLVKLIKDGNWQQVLVFTRTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFK 290

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G+  VLV  ++   G+DIP+   V   +             +  IGR  R   +   I 
Sbjct: 291 SGELRVLVATDIAARGIDIPQLPQVVNFE-----LPNIAEDYVHRIGRTGRAGEAGRAIS 345

Query: 689 YADTITKSIQLAIDETTRRREKQL 712
               +       I+     R  Q 
Sbjct: 346 LVCAVEAPDLFGIE-----RLIQQ 364


>gi|225870075|ref|YP_002746022.1| DEAD box helicase family protein [Streptococcus equi subsp. equi
           4047]
 gi|225699479|emb|CAW93007.1| DEAD box helicase family protein [Streptococcus equi subsp. equi
           4047]
          Length = 538

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 100/260 (38%), Gaps = 21/260 (8%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT P    E+        E + ++   L +  V+    R + ++ +D +     
Sbjct: 176 QTLLFSATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQEKFDTMTRLMD 235

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            QQ    ++   TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV 
Sbjct: 236 VQQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R   S   I +        
Sbjct: 296 TDVAARGLDISGVTHVYNYDIT-----QDPESYVHRIGRTGRAGKSGESITFVSPNEMGY 350

Query: 698 QLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
              I+  T++R K       +     K  +  + ++    +       E      + + A
Sbjct: 351 LTMIEHLTKKRMKPLKPATAEEAFQAKKKVALKKIERDFADDAIRSNFEKFKGDAMKLAA 410

Query: 751 QQLSLSKKKGKAHLKSLRKQ 770
           +    + ++   ++ SL  Q
Sbjct: 411 EF---TPEELALYILSLTVQ 427


>gi|254500508|ref|ZP_05112659.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
 gi|222436579|gb|EEE43258.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
          Length = 480

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 32/198 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T+  SAT    E+++     ++   R        +E+    +  E+V  ++  A  +  
Sbjct: 179 QTLFFSAT-MPPEIQRLTETFLQNPAR--------IEVAPTSSTAENVTQQLKAAGGKDY 229

Query: 584 -----------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
                              ++    KR    L   L      V  +H ++    R+ ++ 
Sbjct: 230 DKRVALRELLEGAEDLQNAIVFCNRKRDISTLFRSLERHEYNVGALHGDMDQRTRMMMLE 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + R G   +LV  ++   GLDIPE   V   D        +    +  IGR  R   S  
Sbjct: 290 NFRKGAIKLLVASDVAARGLDIPEVSHVFNYDVPI-----NAEDYVHRIGRTGRAGRSGT 344

Query: 687 ILYADTITKSIQ-LAIDE 703
                T +      AI+E
Sbjct: 345 AYTLVTESDQKYLRAIEE 362


>gi|213407104|ref|XP_002174323.1| ATP-dependent RNA helicase dhh1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212002370|gb|EEB08030.1| ATP-dependent RNA helicase dhh1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 498

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 14/178 (7%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E+     + +  + +    VD   ++           + +    Q    I +   +  
Sbjct: 243 PYEINLMDELTLRGVTQYYAFVDERQKVH--------CLNTLFSKLQINQSI-IFCNSTN 293

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L + + E      Y H+++    R  +  + R G    LV  +LL  G+DI    +
Sbjct: 294 RVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNV 353

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
           V   D     F ++  + +  IGR+ R  +  + +   +      L   ET    E Q
Sbjct: 354 VINFD-----FPKNAETYLHRIGRSGRFGHRGLAISFISWEDRFNLYKIETELGTEIQ 406


>gi|73965233|ref|XP_861802.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 12 [Canis
           familiaris]
          Length = 486

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 354

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V 
Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 414

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             D     +  S    I  IGR AR+  +       T   
Sbjct: 415 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 449


>gi|327268476|ref|XP_003219023.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Anolis
           carolinensis]
          Length = 713

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 17/173 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII---------RPTGLVDPPVEIRSARTQVEDVY 572
              T++ SAT    E++      +E+ I             +    V +  +  +   + 
Sbjct: 423 VRQTMMFSAT-FPKEIQMLARDFLEEYIFLAVGRVGSTSENITQKVVWVEDSDKRSFLL- 480

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            ++  A  +    L+ V TK+ A+ L ++L+        +H +    +R E +   R G+
Sbjct: 481 -DLLDATGKDSLTLVFVETKKGADSLEDFLFREGYACTSIHGDRSQRDREEALHQFRSGR 539

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 540 SPILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 587


>gi|322514183|ref|ZP_08067247.1| ATP-dependent RNA helicase RhlB [Actinobacillus ureae ATCC 25976]
 gi|322119937|gb|EFX91940.1| ATP-dependent RNA helicase RhlB [Actinobacillus ureae ATCC 25976]
          Length = 407

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++   TK   E++  YL     R   +  ++   +R+ ++     G+ D+LV  ++ 
Sbjct: 254 ERCMIFANTKHKCEEIWSYLVADGHRAGLLTGDIAQKKRLALLDSFTKGQLDILVATDVA 313

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAI 701
             GL IPE   V   D         +   +  IGR  R   S   I +A         AI
Sbjct: 314 ARGLHIPEVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGHSISFACERYAVNLPAI 368

Query: 702 DE 703
           +E
Sbjct: 369 EE 370


>gi|295107314|emb|CBL04857.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 445

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 71/190 (37%), Gaps = 21/190 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR--------PTGLVDPPVE--IRSARTQVEDVYD 573
            T++ SAT     L++     V  I+R          G     +E  I    +  +    
Sbjct: 212 QTLLFSAT-----LDRKVMQSVSAILRDPAFVEVAHKGETSDTIEQFIVPVGSMQKASLL 266

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            + LA +   R+++   TK  AE  T  L     R   +HS+    +R   +     G  
Sbjct: 267 RLLLAERGSKRVIVFTDTKTRAEICTGQLKRAGFRAESIHSDKTQAQRKRALAAFSKGDV 326

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
           DVLV  ++L  G+D+P+   V   +        +    +  IGR  R   +   I +   
Sbjct: 327 DVLVATDVLARGIDVPDIAYVVNYE-----LPENPDDYVHRIGRTGRAGEAGCSISFVSP 381

Query: 693 ITKSIQLAID 702
             K+  L I+
Sbjct: 382 EAKAQLLDIE 391


>gi|126740399|ref|ZP_01756087.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
 gi|126718535|gb|EBA15249.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
          Length = 506

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/325 (16%), Positives = 95/325 (29%), Gaps = 45/325 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++     LL       T  QI  +   D      + + GF  P       L   
Sbjct: 164 TPGRLLDHFERGKLLL------TGVQIMVVDEADR-----MLDMGFI-PDIERIFSLTP- 210

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR------PTGLVDPPVEIRSARTQVED 570
                   T+  SAT    E+E+     +    R       T   +    +   +   +D
Sbjct: 211 ----FTRQTLFFSATMAP-EIERITNTFLSAPERVEVARQATTSENIEQSVVMFKASRKD 265

Query: 571 ---------VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
                    +   I     +    ++    K   + + + L +       +H ++   +R
Sbjct: 266 REGSEKRRVLRTLIEQEGDKLTNGIIFCNRKTDVDIVAKSLKKYGFDAAPIHGDLDQSQR 325

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + +   R G   +LV  ++   GLD+P    V   D             +  IGR  R 
Sbjct: 326 TKTLDGFRDGSLRILVASDVAARGLDVPSVSHVFNFDVPG-----HAEDYVHRIGRTGRA 380

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
                 +          LA  E   ++E     N      P+  ++   +       +DA
Sbjct: 381 GRDGKAITICAPRDEKALAAVEDLVKKEIARLENPVKKPEPKK-RKSNKD------QKDA 433

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKS 766
           A        +   + K   K H+  
Sbjct: 434 AEIAADAVTKPEPVEKSDTKKHVSK 458


>gi|150390823|ref|YP_001320872.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950685|gb|ABR49213.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 529

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 101/266 (37%), Gaps = 38/266 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQVEDVYDE 574
            T + SAT  S E+E+     ++Q  +            +     E++    +VE +   
Sbjct: 180 QTAMFSAT-ISREIERIAQKYMKQPEKIMVAQKALTVPQISQYYFEVKPHE-KVEALCRI 237

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +++   +    ++   TKR  ++LTE L  R      +H ++K  +R  +++  R    D
Sbjct: 238 LDM--DKTDLGIIFCRTKRSVDELTEKLQNRGYSAAAIHGDLKQTQRDRVMKKFRNRTID 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   G+D+ +  +V   D             +  IGR  R     V  Y     
Sbjct: 296 LLVATDVAARGIDVNDVEMVMNYD-----IPEDFEYYVHRIGRTGRAGKEGVA-YTLATG 349

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI-LLEDAATTNISIDAQQL 753
           K +         R  K LE   K  I    V+ KI  V D +   +D+    I    ++ 
Sbjct: 350 KQM---------RTLKALESYIKGKI----VRRKIPTVNDVVEKQKDSIADQIHAVIEKG 396

Query: 754 SLSKKKGKAHLKSLRKQ---MHLAAD 776
            L+  +    ++ L      M +AA 
Sbjct: 397 GLT--EYTNFVEKLSDDHNSMDIAAA 420


>gi|301779033|ref|XP_002924934.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like
           [Ailuropoda melanoleuca]
          Length = 598

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H++    +R   +   R GK
Sbjct: 402 MRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGK 461

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  +  K + +  
Sbjct: 462 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGHKGKAVTFFT 516

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 517 EDDKPLLRSV 526


>gi|291412972|ref|XP_002722747.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Oryctolagus
           cuniculus]
          Length = 483

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D             L    + + L +     L     + S
Sbjct: 242 MIVLDEADKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 290

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ + +    V    ++           + +    Q    I +  
Sbjct: 291 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFC 341

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI 
Sbjct: 342 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 401

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 402 AVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 451


>gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 518

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 17/194 (8%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQIIRPTGLVDPP------VEIRSARTQVEDVYDEI 575
            T++ SAT P +  +L Q      E +      V  P      +E+     Q  D    +
Sbjct: 177 QTMLFSATMPANIQKLAQQFLKNPEHVSVIPKQVSAPLIDQAYIEVH--ERQKFDALTRL 234

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +     ++   TKR  ++L+E L ++      +H ++   +R  ++R  R G  DV
Sbjct: 235 LD-MESPELAIVFGRTKRRVDELSEALQKQGYSADGLHGDLSQNQRDNVMRKFRDGSIDV 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLD+     V   D       +   S +  IGR  R     V   +     
Sbjct: 294 LVATDVAARGLDVSGVTHVVNFD-----LPQDPESYVHRIGRTGRAGKEGVAWSFVTPRE 348

Query: 695 KSIQLAIDETTRRR 708
                 I+  TR +
Sbjct: 349 MDHLRFIERITRHK 362


>gi|209879275|ref|XP_002141078.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556684|gb|EEA06729.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 397

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++    K   E L+  + E +  V ++H ++   +R +I+R+ R GK  VL+  +L   G
Sbjct: 267 VIFCNKKAKVEWLSSKMIENHFTVSFVHGDLSQKDREQILREFRQGKTRVLIATDLWGRG 326

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           +DI +  LV   D        +K   I  IGR+ R     V +    
Sbjct: 327 IDIQQINLVINYD-----IPTNKELYIHRIGRSGRFGRKGVAINLVK 368


>gi|114771133|ref|ZP_01448573.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium
           HTCC2255]
 gi|114548415|gb|EAU51301.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium
           HTCC2255]
          Length = 531

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 72/182 (39%), Gaps = 29/182 (15%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT  S E+++     +   ++        V +    + V+ +   +   ++Q  
Sbjct: 283 QTLLFSAT-MSKEIKKLTETYLTDPVQ--------VSVTPENSTVDKIEQSLMHLSKQNK 333

Query: 584 --------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                         R+++   TK  ++ L ++L  +NI    +H      +R   + D +
Sbjct: 334 GLALQRIISANPKKRVIVFSRTKHGSDKLVKWLGTQNIGADAIHGNKSQGQRQRALDDFK 393

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVIL 688
            GK  +L+  ++   G+DIP   +V   D           S +  IGR AR   + K I 
Sbjct: 394 KGKTYILIATDIAARGIDIPGIEIVINFD-----LPNVPESYVHRIGRTARAGADGKAIA 448

Query: 689 YA 690
           + 
Sbjct: 449 FC 450


>gi|296201956|ref|XP_002748362.1| PREDICTED: probable ATP-dependent RNA helicase DDX52 [Callithrix
           jacchus]
          Length = 575

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 8/129 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R   +   R GK
Sbjct: 403 MRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGK 462

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  N  K I +  
Sbjct: 463 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKAITFFT 517

Query: 692 TITKSIQLA 700
              K +  +
Sbjct: 518 EDDKPLLRS 526


>gi|113460320|ref|YP_718381.1| ATP-dependent RNA helicase RhlB [Haemophilus somnus 129PT]
 gi|122945181|sp|Q0I1X0|RHLB_HAES1 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|112822363|gb|ABI24452.1| ATP-dependent RNA helicase, DEAD box family [Haemophilus somnus
           129PT]
          Length = 419

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 63/317 (19%), Positives = 107/317 (33%), Gaps = 52/317 (16%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +D   V +         +  R   L   GF        R +R+    C 
Sbjct: 144 IDYV-KQGIIRLDYIQVVV-------LDEADRMFDL---GFI-------RDIRYLLRKCP 185

Query: 522 RPT---TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSAR----TQVEDVYD 573
            P    T++ SAT      E     + + Q +    L      IR        Q +    
Sbjct: 186 VPQQRLTMLFSATLSYKVRELAFEHMNDPQYVEIEPLQKTGHRIREELFYPSNQDKMALL 245

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
              L  +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G  
Sbjct: 246 MTLLEEEWPERCIIFSNTKHRCEEIWGYLSADGHRVGLLTGDVMQKKRLSLLKQFTDGTL 305

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
           D+LV  ++   GL IP+   V   D             +  IGR  R   S + I +A  
Sbjct: 306 DILVATDVAARGLHIPDVTHVFNYD-----LPDDCEDYVHRIGRTGRAGESGISISFACE 360

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
                  AI+E              H+I        + +     L+ED  T +       
Sbjct: 361 EYAINLPAIEE-----------YIGHSI-------PVSQYDAKALIEDLPTPHRIKRGAF 402

Query: 753 LSLSKKKGKAHLKSLRK 769
            S S    +  +K L+K
Sbjct: 403 DSRS--NLQRTIKRLKK 417


>gi|81294184|gb|AAI08030.1| Ddx52 protein [Danio rerio]
          Length = 588

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +   A +L   L    I V  +H++    +R  ++   R GK  VL+   LL  
Sbjct: 417 VLVFVQSIDRARELYHELVYEGINVDVIHADRTQQQRDNVVSSFRSGKIWVLICTALLAR 476

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAI 701
           G+D     LV   D     F  S    I  IGR  R  +  K + +     K +  +I
Sbjct: 477 GIDFKGINLVINYD-----FPTSAVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLLRSI 529


>gi|328711288|ref|XP_001948608.2| PREDICTED: ATP-dependent RNA helicase vasa, isoform A isoform 1
           [Acyrthosiphon pisum]
 gi|328711290|ref|XP_003244501.1| PREDICTED: ATP-dependent RNA helicase vasa, isoform A isoform 2
           [Acyrthosiphon pisum]
          Length = 579

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 15/182 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR-PTGLV-----DPPVEIRSARTQVEDVYDEINL 577
            T++ SAT         +  +    +    G +     D   EIR   T+ E   + I +
Sbjct: 349 QTLLFSATLADDIQMLSKAYLKPNYVFVAVGEIGGACKDVKQEIREV-TKFEKKKELIKV 407

Query: 578 AAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               G     ++ V  KR A+ +  +L E++     +H + +  ER + +RD +  +  +
Sbjct: 408 LESLGDCKGTMVFVEQKRNADFIAAFLSEKDYPTTSIHGDREQPEREQALRDFKNNRMKI 467

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV   +   GLDI     V   D        S    +  IGR  R  NS   + + D+ +
Sbjct: 468 LVATAVAARGLDIKGVNCVINFD-----MPSSIDEYVHRIGRTGRLGNSGRAVSFYDSTS 522

Query: 695 KS 696
            S
Sbjct: 523 DS 524


>gi|313837601|gb|EFS75315.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
 gi|314972540|gb|EFT16637.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
          Length = 536

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 72/189 (38%), Gaps = 17/189 (8%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-----DVYDEIN 576
            T++ SAT P     L + Q      + R  G  D    +   +  V      D  + I 
Sbjct: 218 QTMLFSATMPAPIMALARSQLNRPVHV-RAEG-ADTQATVPDTQQFVYQAHPLDKIEIIG 275

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              Q     ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G   
Sbjct: 276 RILQANDAEKVIIFCRTKRACQRLSDDLNDRGFKARAIHGDLTQVAREKALKRFRHGDVT 335

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           +LV  ++   G+D+     V   +         + + +  IGR  R     V +   D  
Sbjct: 336 ILVATDVAARGIDVTGVSHVINHEC-----PEDEKTYVHRIGRTGRAGTKGVAVTLVDWA 390

Query: 694 TKSIQLAID 702
             +    ID
Sbjct: 391 DVTRWKLID 399


>gi|242241488|ref|ZP_04795933.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
 gi|242235031|gb|EES37342.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
          Length = 528

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 78/196 (39%), Gaps = 17/196 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPTG------LVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      EL Q Q +   +II+          +D    I     + +   + +
Sbjct: 196 QTMLFSATMPKAIQELVQ-QFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFL 254

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +    Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+
Sbjct: 255 D--VHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 312

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLDI     V   D       +   S    IGR  R     + + + + I 
Sbjct: 313 LVATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIE 367

Query: 695 KSIQLAIDETTRRREK 710
                 I++   RR K
Sbjct: 368 MDYIRQIEDVNNRRMK 383


>gi|254578784|ref|XP_002495378.1| ZYRO0B09856p [Zygosaccharomyces rouxii]
 gi|238938268|emb|CAR26445.1| ZYRO0B09856p [Zygosaccharomyces rouxii]
          Length = 540

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 78/199 (39%), Gaps = 16/199 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E++Q     +   I+          +  +   VE+ S   + + +   
Sbjct: 290 QTLMWSAT-WPKEVKQLARDYLTDPIQVQIGSLELSASHTIKQVVEVISEFEKRDRLSKH 348

Query: 575 INLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           + +A++ Q  ++L+   TKR  +D+T+YL +       +H +    ER  ++ + + G+ 
Sbjct: 349 LEIASEDQDSKVLVFASTKRTCDDITQYLRQDGWSALAIHGDKDQRERDWVLEEFKNGRS 408

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+     V   D        +    +  IGR  R       +   T 
Sbjct: 409 PIMVATDVAARGIDVKGINYVINYD-----MPGNIEDYVHRIGRTGRAGAKGTAISFFTE 463

Query: 694 TKSIQLAIDETTRRREKQL 712
                 A   +  R  KQ 
Sbjct: 464 GNKGLGASLISIMREAKQE 482


>gi|212545060|ref|XP_002152684.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Penicillium marneffei
           ATCC 18224]
 gi|210065653|gb|EEA19747.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Penicillium marneffei
           ATCC 18224]
          Length = 498

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 75/226 (33%), Gaps = 35/226 (15%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 213 SFHPKDRQVMLFSATFPMIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVH- 271

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 272 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNR 323

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 324 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 378

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +          L   E     E Q          PQS+ +K+
Sbjct: 379 LGLAINLINWDDRFNLYKIEQELGTEIQ--------PIPQSIDKKL 416


>gi|119587816|gb|EAW67412.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6, isoform CRA_a [Homo
           sapiens]
          Length = 316

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D             L    + + L +     L     + S
Sbjct: 75  MIVLDEADKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 123

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ + +    V    ++           + +    Q    I +  
Sbjct: 124 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFC 174

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI 
Sbjct: 175 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 234

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 235 AVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 284


>gi|73540602|ref|YP_295122.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72118015|gb|AAZ60278.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 537

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 82/238 (34%), Gaps = 31/238 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         V +  V + Q+  +   +  R     + GF LP       L   
Sbjct: 187 TPGRLLD--------HVQQKSVNLSQVQMLVLDEADRM---LDMGF-LPDLQRIINLLPA 234

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVED----- 570
           +       T++ SAT            + + +       +   E +R    QVED     
Sbjct: 235 Q-----RQTLLFSATFSPEIKRLAASYLKQPVTIEVARSNSTNENVRQMVYQVEDGQKQA 289

Query: 571 -VYDEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            V   +   A+QGL  + ++ V +K     L  +L    I    +H +    ER++ +  
Sbjct: 290 AVVHLLRQRAEQGLSKQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEG 349

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            + G  D LV  ++   GLDI +   V   D        S    +  IGR  R   S 
Sbjct: 350 FKNGTIDALVATDVAARGLDIADMPCVINFD-----LPFSAEDYVHRIGRTGRAGASG 402


>gi|71000753|ref|XP_755058.1| DEAD-box RNA helicase Dhh1/Vad1 [Aspergillus fumigatus Af293]
 gi|74673820|sp|Q4WWD3|DHH1_ASPFU RecName: Full=ATP-dependent RNA helicase dhh1
 gi|66852695|gb|EAL93020.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Aspergillus fumigatus
           Af293]
 gi|159128072|gb|EDP53187.1| ATP dependent RNA helicase (Dhh1), putative [Aspergillus fumigatus
           A1163]
          Length = 507

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 75/226 (33%), Gaps = 35/226 (15%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 215 SFHPKDRQVMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVH- 273

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 274 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNR 325

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 326 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 380

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +          L   E     E Q          PQ++ +K+
Sbjct: 381 LGLAINLINWDDRFNLYKIEQELGTEIQ--------PIPQNIDKKL 418


>gi|255009347|ref|ZP_05281473.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313147103|ref|ZP_07809296.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313135870|gb|EFR53230.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 418

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           S   +DE+   +        G +     + +Y   LP   + + + F      +   +  
Sbjct: 151 SYFILDEADRMLD------MGFYEDIMQIVKY---LP--KERQTIMFSATMPSKIQQLAN 199

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           +      E++       E+I++   +            Q +        A +   R+++ 
Sbjct: 200 TILNNPVEVKLAVSKPAEKIVQAAYVC--------YENQ-KLGIVRSLFAEEVPERVIIF 250

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
             +K   +++ + L    + V  MHS+++  +R  I+ + + G+ ++LV  +++  G+DI
Sbjct: 251 ASSKLKVKEVAKALKMMKLNVGEMHSDLEQAQREFIMHEFKSGRINILVATDIVSRGIDI 310

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
            +  LV   D             +  IGR AR  N  V + + +   ++    I+
Sbjct: 311 DDIRLVINFDV-----PHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNFKNIE 360


>gi|224285398|gb|ACN40422.1| unknown [Picea sitchensis]
          Length = 428

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L       V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 202 YDIFQLLPTNLQVGVFSATMPPEALEITRKFMTNPVRILVKRDELTLEGIKQFYVNVERE 261

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ + T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 262 DWKLDTLCDLYETLAIT--QSVIFINTRRKVDWLTDQMRARDHTVSATHGDMDQNTRDII 319

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 320 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 374

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 375 GVAINFVTKDDERMLQDIQR 394


>gi|195572651|ref|XP_002104309.1| GD18514 [Drosophila simulans]
 gi|194200236|gb|EDX13812.1| GD18514 [Drosophila simulans]
          Length = 713

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 74/207 (35%), Gaps = 17/207 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            TI+ SAT  PG   L Q       Q+      +  T  V   +++        +     
Sbjct: 468 QTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIKLMEDDMAKFNTITSF 527

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   +I++    K  A+DL+  L       + +H     ++R + I D++ G   +
Sbjct: 528 VKNMSDTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRI 587

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI +   V   D     F R+    +  +GR  R       +   T   
Sbjct: 588 LVATDVASRGLDIEDITHVINYD-----FPRNIEEYVHRVGRTGRAGRQGTSISFFTRED 642

Query: 696 --SIQLAIDETTRRREKQLEHNKKHNI 720
               +  ID       +Q   ++ HN+
Sbjct: 643 WGMAKELIDILQE--AEQEVPDELHNM 667


>gi|124361137|gb|ABN09109.1| Helicase, C-terminal [Medicago truncatula]
          Length = 413

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 82/211 (38%), Gaps = 25/211 (11%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHN 715
            V +   T      L+        + Q  +N
Sbjct: 377 GVAINFVTTDDERMLS--------DIQKFYN 399


>gi|118358020|ref|XP_001012258.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89294025|gb|EAR92013.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 744

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 97/276 (35%), Gaps = 39/276 (14%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--------------IR-SART 566
           RP  ++ SAT  SW        I  + +R   ++   V+              I      
Sbjct: 255 RPQNLLFSATMPSW-----VHDIARKFLREDRVLIDLVKNLGNKTSQDVTHLAINCPYFQ 309

Query: 567 QVEDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           + E + D I         R+++   TK  A ++          V+ +H ++   +R    
Sbjct: 310 RTEAIGDVILCYGGGAHSRVIIFCETKNEANEIM-LKANIKQDVQVLHGDIPQKQREITF 368

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +  R GKF  LV  N+   GLDIPE  L+  L+  KE       + I   GR  R     
Sbjct: 369 QGFREGKFKCLVATNVAARGLDIPEVDLIVQLEPPKE-----LDAYIHRSGRTGRAGKKG 423

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT-- 743
           V +   T  +  Q  I+   ++   +++  K     P  +       I   L+    T  
Sbjct: 424 VCITFYTKKQ--QSLIERIEKKCHIKMQ--KVGAPQPADLIRASQNDIKKNLMSVNRTVL 479

Query: 744 ---TNISIDAQQLSLSKKKGKAHLK---SLRKQMHL 773
                +S+D  Q    ++  +  +       ++M  
Sbjct: 480 GIFKEVSVDLIQEFGPEEALERAIAFISGFTEKMKQ 515


>gi|313247629|emb|CBY15795.1| unnamed protein product [Oikopleura dioica]
          Length = 595

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 68/187 (36%), Gaps = 15/187 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRSARTQVEDVYDE 574
             ++ SAT            + +  I  T           +   V+I     + E +   
Sbjct: 286 QLLMYSATWLKEVQALADDFLGDNYIHATIGSTKLSCNKRILQIVDICDQYEKDEKLMKL 345

Query: 575 INLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           I+   ++   + ++   TKR A++LT  +         +H +    ER  +++  R G+ 
Sbjct: 346 ISHLMEERESKTIVFTETKRRADELTYKMKRLRWEAAAIHGDKSQSERDHVLKRFRSGRI 405

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +L+  ++   GLDI +   V   D     F       +  IGR AR  ++K   Y    
Sbjct: 406 PILIATDVASRGLDINDVKFVVNFD-----FPGQIEDYVHRIGRTARGKDAKGTSYTFFT 460

Query: 694 TKSIQLA 700
               + A
Sbjct: 461 QGDGKHA 467


>gi|225429488|ref|XP_002278119.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296081635|emb|CBI20640.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 377 GVAINFVTKDDERMLFDIQR 396


>gi|57085923|ref|XP_536551.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX6
           (DEAD-box protein 6) (ATP-dependent RNA helicase p54)
           (Oncogene RCK) isoform 1 [Canis familiaris]
 gi|73954674|ref|XP_849975.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX6
           (DEAD-box protein 6) (ATP-dependent RNA helicase p54)
           (Oncogene RCK) isoform 2 [Canis familiaris]
 gi|126326574|ref|XP_001370626.1| PREDICTED: similar to DDX6 protein [Monodelphis domestica]
 gi|149716584|ref|XP_001503067.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Equus
           caballus]
 gi|296216344|ref|XP_002754541.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like
           [Callithrix jacchus]
 gi|301791568|ref|XP_002930752.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like
           [Ailuropoda melanoleuca]
 gi|281351767|gb|EFB27351.1| hypothetical protein PANDA_021316 [Ailuropoda melanoleuca]
          Length = 483

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D             L    + + L +     L     + S
Sbjct: 242 MIVLDEADKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 290

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ + +    V    ++           + +    Q    I +  
Sbjct: 291 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFC 341

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI 
Sbjct: 342 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 401

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 402 AVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 451


>gi|71280656|ref|YP_266818.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71146396|gb|AAZ26869.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 420

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 73/198 (36%), Gaps = 29/198 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
               T++ SAT      +  + I+VE            VEI       +DV   +     
Sbjct: 180 KTKQTLLFSATFADDIYKMSKNILVE---------PKMVEIDEKNKAADDVEQLVYGVDA 230

Query: 581 QGLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
              R              +L+   TK+ A+DL + + +  ++   +H +     R + + 
Sbjct: 231 DRKRELTSFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALH 290

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + + GK   L+  ++   G+DI     V   +        +    +  IGR AR  NS +
Sbjct: 291 EFKEGKVRALIATDVAARGIDIKGLSHVINYE-----LPYNAEDYVHRIGRTARAGNSGL 345

Query: 687 ILYADTITKS-IQLAIDE 703
            +   +  +  +  AI+E
Sbjct: 346 AVSLVSPGEEWLLTAIEE 363


>gi|47217137|emb|CAG02638.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 602

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 63/183 (34%), Gaps = 15/183 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYD 573
              T++ SAT    E++      +E  I          +  +   V       +   + D
Sbjct: 326 IRQTMMFSAT-FPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLD 384

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R G+ 
Sbjct: 385 LLNATGKDSL-TLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRC 443

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV   +   GLDI     V   D             +  IGR  R  N  +       
Sbjct: 444 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLGLATSFFND 498

Query: 694 TKS 696
             S
Sbjct: 499 KNS 501


>gi|7022398|dbj|BAA91585.1| unnamed protein product [Homo sapiens]
          Length = 622

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 76/195 (38%), Gaps = 18/195 (9%)

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-----LVDPPVEIRSARTQVE 569
           F  +   R  T++ SAT         +  +V+ +    G      +D   E+   + + +
Sbjct: 362 FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAK 420

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            VY  +    +    +L+    K   + + EYL  + +    +H      ER + I   R
Sbjct: 421 MVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFR 479

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GK DVLV  ++  +GLD P    V   D  +E       + +  IGR  R+ N+ +   
Sbjct: 480 EGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGIATT 534

Query: 690 ADTITKSIQLAIDET 704
                  I  A DE+
Sbjct: 535 F------INKACDES 543


>gi|327290128|ref|XP_003229776.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like [Anolis
           carolinensis]
          Length = 484

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D             L    + + L +     L     + S
Sbjct: 243 MIVLDEADKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 291

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ + +    V    ++           + +    Q    I +  
Sbjct: 292 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFC 342

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI 
Sbjct: 343 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 402

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 403 AVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 452


>gi|322368028|ref|ZP_08042597.1| Hef nuclease [Haladaptatus paucihalophilus DX253]
 gi|320552044|gb|EFW93689.1| Hef nuclease [Haladaptatus paucihalophilus DX253]
          Length = 806

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 23/167 (13%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYER-----------NIRVRYMHSEVKTLERIEIIRDLRL 630
           G RI++   ++  AE LT++  +                +     +   E+ E +   R 
Sbjct: 372 GERIIVFTESRDTAETLTDFFNDELGSQLTARRFVGQGDKDGSDGMTQKEQQETLDKFRA 431

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-Y 689
           G+F+VLV  ++  EGLD+PE  LV   +      + +    IQ  GR  R    +V++  
Sbjct: 432 GEFEVLVSTSVAEEGLDVPEVDLVLFYEP-----VPTAVRSIQRKGRTGRQAQGQVVVLL 486

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
           A+         I   ++RRE ++E   +     + V +++ E +D  
Sbjct: 487 AEDTRDEAYFWI---SKRREDEMEEELRK---LKGVAKEVEEELDDS 527


>gi|311264024|ref|XP_003129962.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like [Sus
           scrofa]
          Length = 483

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D             L    + + L +     L     + S
Sbjct: 242 MIVLDEADKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 290

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ + +    V    ++           + +    Q    I +  
Sbjct: 291 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFC 341

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI 
Sbjct: 342 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 401

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 402 AVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 451


>gi|301301069|ref|ZP_07207229.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851339|gb|EFK79063.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 492

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 77/191 (40%), Gaps = 11/191 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QI--IRPTGLVDPPVEIRSARTQVEDVYDEINLAA- 579
            T++ SAT     L+  +  +V  QI  I+   L    V+    +T+  + +D +     
Sbjct: 177 QTLLFSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRLID 236

Query: 580 -QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L+  L  R      +H ++    R+ ++R  + G  D+LV 
Sbjct: 237 VQAPELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R  +    + +        
Sbjct: 297 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDY 351

Query: 698 QLAIDETTRRR 708
              I++ T++R
Sbjct: 352 LRVIEKLTKKR 362


>gi|299532061|ref|ZP_07045456.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
 gi|298719976|gb|EFI60938.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
          Length = 464

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 12/195 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-A 579
           T++ SAT            + +    ++ RP       VE R  +   +D    I     
Sbjct: 178 TLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETAST-VEQRFYKVTDDDKRYAIRSVLK 236

Query: 580 QQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++ +R   +   +K     LT  L    +R   +H +    ER++ +   + G+ D+LV 
Sbjct: 237 ERDIRQAFIFSNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKAGEVDLLVC 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI +   V   D        +    +  IGR  R   S + +   T   S  
Sbjct: 297 TDVAARGLDIKDVPAVFNYDVPF-----NAEDYVHRIGRTGRAGASGLAVTLVTDHDSRN 351

Query: 699 LAIDETTRRREKQLE 713
           +A  E   +++ ++E
Sbjct: 352 VADIEKLTKKKIEVE 366


>gi|124487974|gb|ABN12070.1| putative RNA-dependent helicase p68 [Maconellicoccus hirsutus]
          Length = 328

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 6/123 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           Q+  + ++   TK+  + LT  +    + V  +H +    +R   +   R G+  VLV  
Sbjct: 191 QEENKTIVFAETKKKVDALTRKIRNAGVPVVGIHGDKSQTDRDYSLNAFRSGRAAVLVAT 250

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   GLD+ +   V   D     F  S    I  IGR  R+  +    YA     + +L
Sbjct: 251 DVAARGLDVDDVKYVINYD-----FPNSSEDYIHRIGRTGRSSQTGT-SYAFFTKNNSRL 304

Query: 700 AID 702
           A D
Sbjct: 305 AKD 307


>gi|119587817|gb|EAW67413.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6, isoform CRA_b [Homo
           sapiens]
          Length = 478

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D             L    + + L +     L     + S
Sbjct: 237 MIVLDEADKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 285

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ + +    V    ++           + +    Q    I +  
Sbjct: 286 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFC 336

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI 
Sbjct: 337 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 396

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 397 AVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 446


>gi|164664518|ref|NP_004388.2| probable ATP-dependent RNA helicase DDX6 [Homo sapiens]
 gi|114640683|ref|XP_508798.2| PREDICTED: probable ATP-dependent RNA helicase DDX6 isoform 2 [Pan
           troglodytes]
 gi|332208418|ref|XP_003253300.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 [Nomascus
           leucogenys]
 gi|332837881|ref|XP_003313402.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 isoform 1 [Pan
           troglodytes]
 gi|116241327|sp|P26196|DDX6_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX6; AltName:
           Full=ATP-dependent RNA helicase p54; AltName: Full=DEAD
           box protein 6; AltName: Full=Oncogene RCK
 gi|40675584|gb|AAH65007.1| DDX6 protein [Homo sapiens]
 gi|261858306|dbj|BAI45675.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [synthetic construct]
 gi|312152252|gb|ADQ32638.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [synthetic construct]
          Length = 483

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D             L    + + L +     L     + S
Sbjct: 242 MIVLDEADKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 290

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ + +    V    ++           + +    Q    I +  
Sbjct: 291 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFC 341

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI 
Sbjct: 342 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 401

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 402 AVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 451


>gi|219804752|ref|NP_001137339.1| probable ATP-dependent RNA helicase DDX6 [Bos taurus]
 gi|296480110|gb|DAA22225.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Bos taurus]
          Length = 483

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D             L    + + L +     L     + S
Sbjct: 242 MIVLDEADKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 290

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ + +    V    ++           + +    Q    I +  
Sbjct: 291 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFC 341

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI 
Sbjct: 342 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 401

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 402 AVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 451


>gi|6681159|ref|NP_031867.1| probable ATP-dependent RNA helicase DDX6 [Mus musculus]
 gi|161016793|ref|NP_851841.2| probable ATP-dependent RNA helicase DDX6 [Mus musculus]
 gi|161016795|ref|NP_001104296.1| probable ATP-dependent RNA helicase DDX6 [Mus musculus]
 gi|1709532|sp|P54823|DDX6_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX6; AltName:
           Full=ATP-dependent RNA helicase p54; AltName: Full=DEAD
           box protein 6; AltName: Full=Oncogene RCK homolog
 gi|940408|dbj|BAA09088.1| RCK [Mus musculus]
 gi|18203917|gb|AAH21452.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Mus musculus]
 gi|74138164|dbj|BAE28578.1| unnamed protein product [Mus musculus]
 gi|148693659|gb|EDL25606.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6, isoform CRA_c [Mus
           musculus]
          Length = 483

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D             L    + + L +     L     + S
Sbjct: 242 MIVLDEADKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 290

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ + +    V    ++           + +    Q    I +  
Sbjct: 291 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFC 341

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI 
Sbjct: 342 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 401

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 402 AVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 451


>gi|12381896|dbj|BAB21258.1| eukaryotic initiation factor 4A [Oryza sativa]
 gi|12381898|dbj|BAB21259.1| eukaryotic initiation factor 4A [Oryza sativa]
          Length = 414

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 26/204 (12%)

Query: 515 FEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPT---------GLVDPPVEIRS 563
           ++ +  L P     V SAT     LE      +++ +R           G+    V +  
Sbjct: 205 YDIFQLLPPKIQVGVFSATMPPEGLEIT-LRFMDKPVRILVKRDELTREGIKQFYVNVEK 263

Query: 564 ARTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
              +++   D+YD + +      + ++ V T RM + LT+ +  R+  V   H ++  + 
Sbjct: 264 EDWKLDTLCDLYDSLAIT-----QSVIFVNTLRMVDWLTDKMRSRDHTVSATHGDMDQIT 318

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  I+R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R
Sbjct: 319 RDIIMREFRSGSSRVLITTDLLDRGIDVQQVSLVINYD-----LSTQTENYLHRIGRSGR 373

Query: 681 NVNSKV-ILYADTITKSIQLAIDE 703
                V I++     + +   I  
Sbjct: 374 FGRKGVAIIFVTRDDERMLFDIQR 397


>gi|328958182|ref|YP_004375568.1| ATP-dependent RNA helicase [Carnobacterium sp. 17-4]
 gi|328674506|gb|AEB30552.1| ATP-dependent RNA helicase [Carnobacterium sp. 17-4]
          Length = 488

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 11/168 (6%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSARTQVEDVYDEINL-- 577
            T++ SAT P   E      +  ++   +I  T L  P +   S + Q +    ++    
Sbjct: 185 QTLLFSATMPKEIERIASFYMKPDKQSIVIETTELSKPKIIQSSVKVQEDKKEQQLLDLL 244

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +     ++   T+    +L  +L +  + +  +H  +   +R  ++ D R G+F  LV
Sbjct: 245 TVENADSCMIFCNTQEAVNNLYTFLNKAGLPIDKIHGGMVQEDRFSVMDDFRQGRFRYLV 304

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             ++   G+DI     V   D   E     K S +   GR  R   + 
Sbjct: 305 ATDVAARGIDIENVTHVVNFDVPVE-----KESFVHRTGRTGRAGKTG 347


>gi|289664841|ref|ZP_06486422.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 493

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+              +  +             + + GF      D R L   
Sbjct: 141 TPGRLIDYV----------KQHKVVSLHACEICVLDEADRMFDLGFI----KDIRFLLRR 186

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIR---SARTQVED 570
                   T++ SAT     LE     + E    ++    +    V  R    +  + + 
Sbjct: 187 MPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQT 246

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +   ++ G R ++ V TK   E +   L     RV  +  +V   +R  ++   + 
Sbjct: 247 LLLGLLSRSE-GARTMVFVNTKAFVERVARALERHGYRVGVLSGDVPQKKRESLLNRFQK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G+ ++LV  ++   GL I     V   D             +  IGR AR       I +
Sbjct: 306 GQLEILVATDVAARGLHIDGVKYVYNYD-----LPFDAEDYVHRIGRTARLGEEGDAISF 360

Query: 690 ADT 692
           A  
Sbjct: 361 ACE 363


>gi|239930667|ref|ZP_04687620.1| DEAD-box RNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291439029|ref|ZP_06578419.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341924|gb|EFE68880.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 496

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 17/157 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D +  I   A +  R+++ + TK   + LTE+L +  +R   +H      +R   +   +
Sbjct: 296 DKHAAITEIAARDGRVIMFLDTKHAVDRLTEHLLKSGVRAASLHGGKSQPQRTRTLTQFK 355

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G  +VLV  N+   G+ +    LV  +D             +   GR AR   S  ++ 
Sbjct: 356 NGHVNVLVATNVAARGIHVDSLDLVVNVDP-----PTDHKDYLHRGGRTARAGESGSVVT 410

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
             T             +RR           I P + +
Sbjct: 411 LVTP-----------NQRRAMTRLMALA-GIVPHTTQ 435


>gi|124088759|ref|XP_001347224.1| Nucleolar RNA helicase II [Paramecium tetraurelia strain d4-2]
 gi|50057613|emb|CAH03597.1| Nucleolar RNA helicase II, putative [Paramecium tetraurelia]
          Length = 664

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 97/265 (36%), Gaps = 32/265 (12%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII------VEQII 549
            +  +GF      +N       +N  +   ++ SAT   W  E     +      +  I 
Sbjct: 183 QMLNFGF-----QENIEKIMSYFNERKIQMLLFSATIPDWVKELSHKYMEANTKHINLIK 237

Query: 550 RPTGLVDPPVE---IRSARTQVEDVY-DEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           R        V+   ++ AR Q+     D +++   +  R ++   TKR   ++  +  + 
Sbjct: 238 RHETQTSTTVKHYALQCARNQLSGAIGDVVSVYGGRHARTIIFCETKRECNEIILH-SKL 296

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
               + +H ++   +R       + GKF  LV  N+   GLD P+  L+   +  K+   
Sbjct: 297 PAETQPLHGDIPQQQRTVTFEGFKNGKFKCLVATNVAARGLDFPQVDLIIQCNPPKD--- 353

Query: 666 RSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN--- 721
               S I   GR  R     V I +       +   ++   + +  ++   +  +I    
Sbjct: 354 --IESYIHRSGRTGRAGKDGVCITFYSKKDMGLIERVERVAKIKFIKISAPQHQDIIKAS 411

Query: 722 -------PQSVKEKIMEVIDPILLE 739
                   Q V ++I+++  P+  E
Sbjct: 412 SRDLQTSLQVVSKEIVDMFQPVAQE 436


>gi|120598331|ref|YP_962905.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120558424|gb|ABM24351.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 427

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 106/317 (33%), Gaps = 49/317 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L + +  +++         + ++S +   +  R  +L   GF   L   +D  P +
Sbjct: 142 TPGRLLDLLSSNAI--------KLNRVSALVLDEADRMLSL---GFTEELAQVLDALPAK 190

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT--GLVDPPVEIRSARTQVEDVY 572
                     T++ SAT    E+ +    ++   +        +  +  R          
Sbjct: 191 --------KQTLLFSAT-FPEEVRELTAKLLNNPLEYQLQSEQESTIHQRVITVNRPMKT 241

Query: 573 DEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             +    ++    + L+ V  K     L + L +R I     H +     R  ++   + 
Sbjct: 242 ALLAHLIKEHQWSQALIFVSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKN 301

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+  VL+  ++   G+DI +  +V   D       RS    +  IGR+ R   + + +  
Sbjct: 302 GEISVLIATDIAARGIDIDKLPVVINFD-----LPRSPADYMHRIGRSGRAGEAGLAVTL 356

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
            +        + E         + NK          + + E I     +D     +   A
Sbjct: 357 ISHEDYHHFGVIE---------KKNK---------LKLVREQIVGFEADDDMPAELLEQA 398

Query: 751 QQLSLSKKKGKAHLKSL 767
           + ++  +  GK   K L
Sbjct: 399 KPVAKPEGTGKKKRKQL 415


>gi|41409410|ref|NP_962246.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41398241|gb|AAS05862.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 505

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 7/134 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   +  A  +G   ++   TKR A+ + + L ER  +V  +H ++  + R + ++  R
Sbjct: 251 ELVSRVLQAESRG-ATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKAFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G  DVLV  ++   G+DI +   V             + + +  IGR  R   + V + 
Sbjct: 310 TGDIDVLVATDVAARGIDIDDVTHVINY-----QIPEDEQAYVHRIGRTGRAGKAGVAVT 364

Query: 689 YADTITKSIQLAID 702
             D    +    ID
Sbjct: 365 LVDWDELARWALID 378


>gi|317028056|ref|XP_001400485.2| DEAD/DEAH box RNA helicase [Aspergillus niger CBS 513.88]
          Length = 585

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V +K  A+ L +YLY   +    +HS+    ER + +R  R  K  +LV   +  
Sbjct: 396 RTLIFVNSKTQADFLDDYLYNMGLPSTSIHSDRTQREREDALRAFRTAKCPILVATGVSA 455

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            GLDI     V   D  +       T  +  IGR AR  N  +            LA D
Sbjct: 456 RGLDIKNVMHVVNFDLPR-VQHGGITEYVHRIGRTARIGNEGLATSFYNHDNDADLAPD 513


>gi|156064127|ref|XP_001597985.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|160380609|sp|A7E449|DBP2_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp2
 gi|154690933|gb|EDN90671.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 572

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 70/185 (37%), Gaps = 16/185 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T + SAT    E+       +   I+             +   VE+ S   + + +   
Sbjct: 329 QTCMWSAT-WPKEVRALASDYLNDFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTKH 387

Query: 575 INLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +    + +  +IL+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK 
Sbjct: 388 LEKIMEDKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKS 447

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+     V   D     +  +    I  IGR  R       +   T 
Sbjct: 448 PIMVATDVASRGIDVRNITHVFNYD-----YPNNSEDYIHRIGRTGRAGQKGTAITLFTT 502

Query: 694 TKSIQ 698
               Q
Sbjct: 503 DNQKQ 507


>gi|148693657|gb|EDL25604.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6, isoform CRA_a [Mus
           musculus]
          Length = 485

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D             L    + + L +     L     + S
Sbjct: 244 MIVLDEADKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 292

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ + +    V    ++           + +    Q    I +  
Sbjct: 293 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFC 343

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI 
Sbjct: 344 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 403

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 404 AVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 453


>gi|312863656|ref|ZP_07723894.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           vestibularis F0396]
 gi|311101192|gb|EFQ59397.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           vestibularis F0396]
          Length = 529

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 98/261 (37%), Gaps = 23/261 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
            T++ SAT     +++     ++      I+   L +  V+    R + ++ +D +    
Sbjct: 176 QTLLFSAT-MPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLM 234

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ +IRD +  + D+LV
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   S   +      +  
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMG 349

Query: 698 QLAIDET-TRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
            L I E  T++R K       Q     K  +  + ++    +  D  +  +         
Sbjct: 350 YLGIIENLTKKRMKGLKPPTAQEAFQAKKKVALKKIER---DFADEAIRSNFDKFKGDAV 406

Query: 750 AQQLSLSKKKGKAHLKSLRKQ 770
                 + ++   ++ SL  Q
Sbjct: 407 KLAQEFTPEELALYILSLTVQ 427


>gi|258577027|ref|XP_002542695.1| ATP-dependent RNA helicase p62 [Uncinocarpus reesii 1704]
 gi|237902961|gb|EEP77362.1| ATP-dependent RNA helicase p62 [Uncinocarpus reesii 1704]
          Length = 1336

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 72/184 (39%), Gaps = 14/184 (7%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
             T + SAT      +     + + I    G  D          VEI S   + + +   +
Sbjct: 1099 QTCMWSATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMIQHM 1158

Query: 576  NLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                  +  +IL+   TKR+A+++T +L +       +H + +  ER  ++ + + GK  
Sbjct: 1159 ERIMDDKKSKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSP 1218

Query: 635  VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
            ++V  ++   G+D+ +   V   D     +  +    +  IGR  R   +   +   T  
Sbjct: 1219 IMVATDVASRGIDVRDITHVLNYD-----YPNNSEDYVHRIGRTGRAGANGTAITLFTTD 1273

Query: 695  KSIQ 698
             + Q
Sbjct: 1274 NAKQ 1277


>gi|213965889|ref|ZP_03394080.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
 gi|213951467|gb|EEB62858.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
          Length = 454

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 68/174 (39%), Gaps = 15/174 (8%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVEDV--YDE 574
            T++ SAT PG    L +        I   +G  +  V      I     Q++ V     
Sbjct: 188 QTMLFSATMPGPILTLARTFMNRPVHIRAESGEEEATVHETTKQIVFQSHQMDKVSVIAR 247

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I  A  +G R ++   TKR A  + E L ER   V  +H ++    R   +   R G  D
Sbjct: 248 ILQANGRG-RTIIFARTKRGAASVAEQLGERGFLVTAVHGDMGQPARERSLTAFRNGDVD 306

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           VLV  ++   G+DI +   V             + + +  IGR  R  +S V +
Sbjct: 307 VLVATDVAARGIDIDDVTHVINHQV-----PDDEMTYVHRIGRTGRAGHSGVAV 355


>gi|16125088|ref|NP_419652.1| DEAD-box ATP dependent DNA helicase [Caulobacter crescentus CB15]
 gi|221233815|ref|YP_002516251.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
 gi|13422088|gb|AAK22820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
           crescentus CB15]
 gi|220962987|gb|ACL94343.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
          Length = 476

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 82/240 (34%), Gaps = 43/240 (17%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            + + GF +P       L            +  SAT    E+ +  G ++   ++     
Sbjct: 160 QMLDLGFVVPIRKIAAQLT------KNRQNLFFSAT-MPSEIGKLAGELLNNPVQ----- 207

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEY 601
              V +    T VE +   +     Q  R               ++   TKR A+ + +Y
Sbjct: 208 ---VSVAPQATTVERIDQRVLFIEAQRKRPLLAELFADTSFSRTIVFTRTKRGADRVAKY 264

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L    I    +H +    +R   +   + G+   LV  ++   G+D+ +   V   +   
Sbjct: 265 LNAAGIEAASIHGDKTQGQRERALAAFKAGEMRALVATDIAARGIDVNDVSHVINYE--- 321

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYAD-----TITKSIQLAIDET----TRRREKQL 712
                   + +  IGR AR     + +         + K IQ A  +T     RR +KQL
Sbjct: 322 --LPNVPEAYVHRIGRTARKGKDGIAISFCADDERNLLKDIQKATRQTIPSFDRRNDKQL 379


>gi|328772390|gb|EGF82428.1| hypothetical protein BATDEDRAFT_29496 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 508

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 101/326 (30%), Gaps = 56/326 (17%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR---------LPSC 507
            P  L +   ED      +    + Q+  +   +  R     + GF          LP+ 
Sbjct: 216 TPGRLIDLFEED------DRTCDLSQVKYLVLDEADRM---LDIGFEEAIRKIIKKLPTA 266

Query: 508 MDNRPLRFEEWNCLRPTTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPV 559
              R             T++ SAT          S+     +  +    +     ++  V
Sbjct: 267 AQGR------------QTVMFSATWPQSIQRMAMSYLNNPVKVTVGSTDLSANISIEQRV 314

Query: 560 EIRSARTQVEDVYDEINLA-AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           E+     +   +   +      +  RIL+  L K+ A  L ++L      V  +H ++  
Sbjct: 315 EVLDPFAKETRLLQLLRDYHKSRTNRILIFALYKKEASRLDQFLKRNGYNVASIHGDLSQ 374

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           ++R   I   R GK  +L+  ++   G+DIP    V  +      F  +       IGR 
Sbjct: 375 VQRTAAIDGFRSGKIPLLIATDVAARGIDIPNVEYVINV-----TFPLTVEDYCHRIGRT 429

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ-----SVKEKIMEVI 733
            R   + +     T+                  +    K  + P+     +  ++ ++  
Sbjct: 430 GRAGKTGISHTMFTLHDKSHSGG-------LINILKQAKQPVPPELLKFGTTTKRKVDPT 482

Query: 734 DPILLEDAATTNISIDAQQLSLSKKK 759
             +  +D   T         +    +
Sbjct: 483 YGVFAKDVDMTKKGTKITFDASDDDE 508


>gi|323706324|ref|ZP_08117890.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534376|gb|EGB24161.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 513

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 96/242 (39%), Gaps = 25/242 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA----- 578
            T++ SAT    E++      ++   +   +V   + + + +    +V ++         
Sbjct: 176 QTMMFSAT-MPDEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRI 234

Query: 579 --AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              ++    ++   TK+  ++LTE +  R   V  MH ++   +RI  +R  + G  D L
Sbjct: 235 LDVEEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILDFL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK- 695
           V  ++   G+DI     V   +       +   S +  IGR  R   S V     T  + 
Sbjct: 295 VATDVAARGIDIENVTHVINYN-----LPQDVESYVHRIGRTGRANRSGVAYTLVTSREY 349

Query: 696 SIQLAIDETTR----RRE-------KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
                I++ TR    R+E        ++++NK      +++++   +   P+ +E     
Sbjct: 350 PALKRIEKATRCKIKRKELPTVDDILEVKYNKMIAEIKKTLEKNDYKRFVPLAMELDEEY 409

Query: 745 NI 746
           N+
Sbjct: 410 NL 411


>gi|296812291|ref|XP_002846483.1| DEAD box family helicase [Arthroderma otae CBS 113480]
 gi|238841739|gb|EEQ31401.1| DEAD box family helicase [Arthroderma otae CBS 113480]
          Length = 654

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 5/129 (3%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +  A++    L+  +     + LT       +  RY+  +     R + +   R  +F V
Sbjct: 288 HSRAKERKSTLVFCVDIEHVKGLTAKFRGMGVDARYITGQSSKDVRAKELEAFRNYEFPV 347

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   L  EG DIP    V +    +     SK  LIQ IGR  R    K   +   +  
Sbjct: 348 LVNCGLFTEGTDIPNIDCVLLARPTR-----SKNLLIQMIGRGLRLHPGKSNCHIIDMVA 402

Query: 696 SIQLAIDET 704
           S+   +  T
Sbjct: 403 SLNQGVLTT 411


>gi|126434048|ref|YP_001069739.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           JLS]
 gi|126233848|gb|ABN97248.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS]
          Length = 507

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 7/134 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   I  A  +G   ++   TKR A+ + + L ER  +V  +H ++    R + ++  R
Sbjct: 249 EMVSRILQADGRG-ATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALKSFR 307

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G+ DVLV  ++   G+DI +   V             + + +  IGR  R   + V + 
Sbjct: 308 TGEVDVLVATDVAARGIDIDDITHVINF-----QIPEDEQAYVHRIGRTGRAGKTGVAVT 362

Query: 689 YADTITKSIQLAID 702
             D         ID
Sbjct: 363 LVDWDELPRWSMID 376


>gi|68061551|ref|XP_672775.1| RNA helicase [Plasmodium berghei strain ANKA]
 gi|56490118|emb|CAI02126.1| RNA helicase , putative [Plasmodium berghei]
          Length = 434

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 91/283 (32%), Gaps = 41/283 (14%)

Query: 419 AQRLEQRITYDLE-MLETTGSCQSIENYSRYLTGRNPGE-----PPPTLFEYIPEDSLLF 472
            Q L +   ++ E  L+       +  Y + +     G       P  L +Y+ E+ ++ 
Sbjct: 137 MQVLNEIKNFESELNLKAVAVYGGVPKYFQ-INNIKKGADIIVATPGRLLDYL-ENGII- 193

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGF------RLPSCMDNRPLRF--EEWNCLRPT 524
                     +             L + GF       +     N+ L F    W      
Sbjct: 194 ---------NLLRCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPEQVRK 244

Query: 525 TIV--VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
                 S  P   ++ + +    + I            I S+   ++    +      + 
Sbjct: 245 LAYDFCSFDPVKIQIGKSELTANKNI--------EQQVIVSSSIDLKKKLLDWLKDNYEN 296

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            +IL+   TKR  ++L + L         +H + +  ER  I+ + +  + ++LV  ++ 
Sbjct: 297 NKILIFCDTKRNCDNLCKELRYHQYNSLSIHGDKQQRERDRILNNYKNDRCNILVATDVA 356

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             GLDI    +V   D        +    I  IGR  R  N  
Sbjct: 357 SRGLDIKNISIVINYD-----IPNTIEDYIHRIGRTGRAGNKG 394


>gi|312219444|emb|CBX99388.1| similar to DEAD/DEAH box helicase [Leptosphaeria maculans]
          Length = 683

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 70/201 (34%), Gaps = 17/201 (8%)

Query: 566 TQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
            +  D+      A  +G    L+  +      +LT       +  +++  +     R   
Sbjct: 298 NETNDLVIRTWSAKAKGRNSTLVFCVDLSHVTNLTNNFRACGVDAQFVTGDTPAKIRSAR 357

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I   R G+F VL+   +  EG DIP    V +    K     S+  L+Q IGR  R    
Sbjct: 358 IEAFRRGEFPVLLNCGVFTEGTDIPNIDCVLLARPTK-----SRNLLVQMIGRGMRLHKD 412

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
           K   +   +  ++   +  T               ++P  +   + ++     L++   +
Sbjct: 413 KENCHVIDMVAALSTGVVST----------PTLFGLDPAEIV-DLADMKKMTELKERRES 461

Query: 745 NISIDAQQLSLSKKKGKAHLK 765
               +AQ  ++ +K     L 
Sbjct: 462 EKQREAQAAAVKQKTIATKLP 482



 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ-----RPAIVMAPNKILAA 207
           Q   I  +L  + +  K   +   TGSGKT     +I+ +         +++A  + L  
Sbjct: 74  QEECIQAVLSYLEAGHKRLGVSLATGSGKTVIFTHLIDRVPAVGNASQTLILAHRRELVE 133

Query: 208 QLYSEFKNFFPHNAVE 223
           Q        +P   V+
Sbjct: 134 QAARHCAYAYPDKHVD 149


>gi|300856701|ref|YP_003781685.1| putative RNA helicase [Clostridium ljungdahlii DSM 13528]
 gi|300436816|gb|ADK16583.1| predicted RNA helicase [Clostridium ljungdahlii DSM 13528]
          Length = 525

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 91/256 (35%), Gaps = 25/256 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART------QVEDVYDEINL 577
            T++ SAT    ++++     ++  I+   +    + +   +       Q +       +
Sbjct: 179 QTLLFSAT-MPDQIKKLSSRYMKSNIKSIKIAKNTLTVDKTKQYYYEIKQKDRFESLCRI 237

Query: 578 A-AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               +    ++   TKR  ++L E L  R   V  MH ++   +R+  +R  + G  + L
Sbjct: 238 LDVDEPSSAIIFCKTKRGVDELVEGLQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLEFL 297

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT-- 694
           V  ++   G+D+     V   D       +   S +  IGR  R     +     T    
Sbjct: 298 VATDVAARGIDVENVSHVINYD-----LPQDTESYVHRIGRTGRANKEGIAYSLVTPREY 352

Query: 695 ---KSIQLAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              K I+       RR+E       +  K+    ++++E++  +I     ++       +
Sbjct: 353 ILLKQIEKFTKSKIRRKEIPTVDDIYEAKY----KNIEEQVKSIISEDNYKNFIPIATEL 408

Query: 749 DAQQLSLSKKKGKAHL 764
           D +   +        +
Sbjct: 409 DEEYNLVDVAAALMKI 424


>gi|262201927|ref|YP_003273135.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262085274|gb|ACY21242.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 597

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 4/122 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  E+L E L  R      ++ ++   +R   I  L+ G  D+LV  ++   
Sbjct: 264 MIVFVRTKQATEELAEKLRSRGFSAVAINGDMAQAQRERTINQLKSGGIDILVATDVAAR 323

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+     V   D   +    S    I   GRA R  N   +L+     + +  +I+  
Sbjct: 324 GLDVDRISHVVNYDIPHD--TESYVHRIGRTGRAGRAGN--ALLFVSPRERHLLRSIERA 379

Query: 705 TR 706
           TR
Sbjct: 380 TR 381


>gi|224031067|gb|ACN34609.1| unknown [Zea mays]
          Length = 414

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 205 YDIFQLLPAKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 264

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 265 DWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 322

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 323 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 377

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 378 GVAINFVTRDDERMLFDI 395


>gi|219120692|ref|XP_002181079.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407795|gb|EEC47731.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 500

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 79/207 (38%), Gaps = 17/207 (8%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEI 575
            +  T++ SAT      +  +  +V+ I+   G      +D   E+   + Q   +   +
Sbjct: 252 HQRQTLLFSATFPKKFQDFARQTLVQPIVVNVGRAGAANLDVIQEVEYVK-QEAKIVYLL 310

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   +    +++    K   +D+ EYL  + ++   +H      ER E I   + G+ DV
Sbjct: 311 HCLQKTAPPVIIFCERKGDVDDIHEYLLLKGVQAVSIHGGKDQEERNEAITLFKSGQKDV 370

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++  +GLD      V   D   E       + +  IGR  R   + V         
Sbjct: 371 LIATDVAAKGLDFAAIQHVINFDMPTE-----IENYVHRIGRTGRCGKTGVATTF----- 420

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINP 722
            I  + +ETT    K L    +  I P
Sbjct: 421 -INKSCEETTLLDLKGLLREARQRIPP 446


>gi|269861249|ref|XP_002650337.1| ATP-dependent RNA helicase [Enterocytozoon bieneusi H348]
 gi|220066220|gb|EED43712.1| ATP-dependent RNA helicase [Enterocytozoon bieneusi H348]
          Length = 419

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 6/130 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++++ V +K+M + +          V  +H +V   +R   + +    K  +LV  ++  
Sbjct: 276 QVIIFVNSKKMVDIIYNVFSADGFTVSKLHGDVPLADRDLTLANFAQAKTKILVTTDVFS 335

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS------I 697
            G+DIP+  L+   D   + F  S  + I  IGR+ R      ++   +          I
Sbjct: 336 RGMDIPQVNLIVNFDLPIDTFGNSIETYIHRIGRSGRFNRKGFVIDFISNGDDLETLVKI 395

Query: 698 QLAIDETTRR 707
           Q +I+ET+++
Sbjct: 396 QASINETSKK 405


>gi|225442221|ref|XP_002277703.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 413

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 377 GVAINFVTRDDERMLFDIQR 396


>gi|118602908|ref|YP_904123.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567847|gb|ABL02652.1| ATP-dependent RNA helicase CsdA [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 606

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 80/213 (37%), Gaps = 33/213 (15%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK +  +L E L  R      ++ +++  +R  II + + GK D+L+  ++   
Sbjct: 255 MIIFVRTKTLTTELAEKLSARGFSAEAINGDIQQNQRERIITNYKKGKIDILIATDVAAR 314

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D       +   S +  IGR  R       IL+     + +   I+ 
Sbjct: 315 GLDVERISHVVNYD-----IPQDAESYVHRIGRTGRAGRKGDAILFVSNRERRMLNTIEH 369

Query: 704 TTR----------------RREKQLEHNKKHNINPQS--VKEKIMEVIDPILLE------ 739
            TR                +R +  + N    IN Q   + +K++        E      
Sbjct: 370 ITRQKITPIELPSAKIINAKRIETFKQNIAQTINNQKLDIFKKLVSEFQQENPEIETSKI 429

Query: 740 DAATTNISIDAQQLSLSKKK---GKAHLKSLRK 769
            AA   I+   + L LS+K+       +    K
Sbjct: 430 SAALAFIAQGNEPLLLSEKEPNFNNNQIPKKEK 462


>gi|108798364|ref|YP_638561.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119867461|ref|YP_937413.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           KMS]
 gi|108768783|gb|ABG07505.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119693550|gb|ABL90623.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS]
          Length = 507

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 7/134 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   I  A  +G   ++   TKR A+ + + L ER  +V  +H ++    R + ++  R
Sbjct: 249 EMVSRILQAEGRG-ATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALKSFR 307

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G+ DVLV  ++   G+DI +   V             + + +  IGR  R   + V + 
Sbjct: 308 TGEVDVLVATDVAARGIDIDDITHVINF-----QIPEDEQAYVHRIGRTGRAGKTGVAVT 362

Query: 689 YADTITKSIQLAID 702
             D         ID
Sbjct: 363 LVDWDELPRWSMID 376


>gi|84494615|ref|ZP_00993734.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
 gi|84384108|gb|EAP99988.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
          Length = 540

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 22/220 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQIIRPT-- 552
            + + GF LP       +           T++ SAT PG+      + +     IR    
Sbjct: 196 EMLDLGF-LPDVEKLLAMTSPG-----RQTMLFSATMPGAVVALARRYMTQPTHIRAMQE 249

Query: 553 GLVDPPVEIRSARTQVE-----DVYDEINLAAQQGLR--ILLTVLTKRMAEDLTEYLYER 605
           G  D    +++    V      D  + +    Q   R   ++   TKR A  + + L ER
Sbjct: 250 GEGDTSQTVKAITQHVYRAHAMDKVEMLARMLQANGRGLTIVFSRTKRTAAKVADDLAER 309

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
                 +H ++    R + +R  R GK DVLV  ++   G+D+     V           
Sbjct: 310 GFAAAAIHGDLGQGAREQALRAFRSGKVDVLVATDVAARGIDVENVTHVINY-----QCP 364

Query: 666 RSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDET 704
             + + +  IGR  R   + + + + D         I++T
Sbjct: 365 EDEKTYVHRIGRTGRAGQTGIAVTFVDWDDLHRWTMINKT 404


>gi|322820447|gb|EFZ27062.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 595

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 70/213 (32%), Gaps = 35/213 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTG-----LVDPPVEIRSARTQVEDVYDEINLA 578
            T++ SAT    E+++      +  IR        L +  V      TQ     DE+   
Sbjct: 291 QTLMFSAT-WPKEIQRLAAEFQKDWIRINVGSTELLANKDVTQHFILTQEHAKMDELKKL 349

Query: 579 AQQ--GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  R+L+   TKR A+DL   L         +H + +  +R  I+   R      L
Sbjct: 350 LANRLNQRVLIFCKTKRTADDLEWQLKRWGYDAMAIHGDKEQRQREFILERFRKDPRLCL 409

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLDI E   V   D     F       +  IGR  R           T    
Sbjct: 410 VATDVAARGLDIKELETVINYD-----FPMQIDDYVHRIGRTGRAGAKGEAFTLIT---- 460

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
                     +REKQ        I P  V E I
Sbjct: 461 ----------KREKQ--------ITPAVVTELI 475


>gi|239926683|ref|ZP_04683636.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 471

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 79/224 (35%), Gaps = 39/224 (17%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            + + GF LP  +D       +        ++ SAT             V+Q++R   L 
Sbjct: 184 QMCDLGF-LPQVVDVLDQVHPD-----GQRMLFSAT---------LDRDVDQLVRRC-LH 227

Query: 556 DPPVE-IRSARTQV------------EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           DP V  +  +   V             D Y      A +  R+LL + TK   + LT +L
Sbjct: 228 DPVVHSVDPSAGTVTTMEHHVLVVHGPDRYAVTTEIAARDGRVLLFLDTKHAVDQLTRHL 287

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
               +    +HS     +R   +   + G+  VLV  N+   GL + +  LV  +D    
Sbjct: 288 RASGVHAGALHSGKSQPQRTRTLAQFKNGQLTVLVATNVAARGLHVDDLDLVVNVDP--- 344

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
                    +   GR AR   S  ++      +       ET+R
Sbjct: 345 --PTDPKDYVHRAGRTARAGESGSVVTLVLSGQR-----RETSR 381


>gi|256832539|ref|YP_003161266.1| DEAD/DEAH box helicase domain-containing protein [Jonesia
           denitrificans DSM 20603]
 gi|256686070|gb|ACV08963.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
           20603]
          Length = 657

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 6/152 (3%)

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           +D    +   R +   +Y  +  A       ++   T+  AE++   L ER +    +  
Sbjct: 263 IDQEYAVVPFRHKTGSLYRVL--ATSDVEAAIVFCRTRGAAEEVGAALIERGVSAATISG 320

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           +V   +R +I+  LR G+ DVLV  ++   GLD+   GLV   D    G   +    I  
Sbjct: 321 DVPQKDREKIVERLRNGQLDVLVATDVAARGLDVDRIGLVVNFD--IPGEPEAYVHRIGR 378

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTR 706
            GRA R    + + +     +    +I+ T R
Sbjct: 379 TGRAGRQG--RALSFITPAERGKLRSIERTIR 408


>gi|113931550|ref|NP_001039224.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Xenopus (Silurana)
           tropicalis]
 gi|89272468|emb|CAJ82454.1| novel GUCT (NUC152) domain containing DEAD/DEAH box helicase
           [Xenopus (Silurana) tropicalis]
          Length = 755

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 94/258 (36%), Gaps = 35/258 (13%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRP----TGLVDPPVEI--------RSARTQVED 570
           P T++ SAT   W     +  + +Q  +            + +        RS +  V  
Sbjct: 362 PQTLLFSATCPDWMYNVAKKYMKKQFEKIDLVGHRSQKAAITVEHLAIECTRSQKAAV-- 419

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D + + +    + ++   +K  A +L           + +H +++  ER  I++  R 
Sbjct: 420 LGDIVQVYSGSHGKSIIFCDSKLEAHELATNCGSLKQSAKPLHGDLQQKEREVILKGFRQ 479

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G F+VLV  N+   GLDIPE  LV +  A KE       + +   GR  R   + + +  
Sbjct: 480 GSFEVLVATNVAARGLDIPEVDLVVLYSAPKE-----ADAYVHRSGRTGRAGRTGICISL 534

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISI 748
                            RE+    N +    I  + V    +  +      DA  +  S+
Sbjct: 535 YEP--------------RERHYLRNVERSTGITFKRVGIPSLLNVAKSSSADAIKSLDSV 580

Query: 749 DAQQLSLSKKKGKAHLKS 766
            A  +   K+  +  ++ 
Sbjct: 581 PADVIEHFKEYAQELIEK 598


>gi|68070111|ref|XP_676967.1| ATP-dependent RNA helicase [Plasmodium berghei strain ANKA]
 gi|56496896|emb|CAH98719.1| ATP-dependent RNA helicase, putative [Plasmodium berghei]
          Length = 715

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 91/283 (32%), Gaps = 41/283 (14%)

Query: 419 AQRLEQRITYDLE-MLETTGSCQSIENYSRYLTGRNPGE-----PPPTLFEYIPEDSLLF 472
            Q L +   ++ E  L+       +  Y + +     G       P  L +Y+ E+ ++ 
Sbjct: 414 MQVLNEIKNFESELNLKAVAVYGGVPKYFQ-INNIKKGADIIVATPGRLLDYL-ENGII- 470

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGF------RLPSCMDNRPLRF--EEWNCLRPT 524
                     +             L + GF       +     N+ L F    W      
Sbjct: 471 ---------NLLRCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPEQVRK 521

Query: 525 TIV--VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
                 S  P   ++ + +    + I            I S+   ++    +      + 
Sbjct: 522 LAYDFCSFDPVKIQIGKSELTANKNI--------EQQVIVSSSIDLKKKLLDWLKDNYEN 573

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            +IL+   TKR  ++L + L         +H + +  ER  I+ + +  + ++LV  ++ 
Sbjct: 574 NKILIFCDTKRNCDNLCKELRYHQYNSLSIHGDKQQRERDRILNNYKNDRCNILVATDVA 633

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             GLDI    +V   D        +    I  IGR  R  N  
Sbjct: 634 SRGLDIKNISIVINYD-----IPNTIEDYIHRIGRTGRAGNKG 671


>gi|88861236|ref|ZP_01135868.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
 gi|88816717|gb|EAR26540.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
          Length = 422

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 68/203 (33%), Gaps = 16/203 (7%)

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           R+P       L F      R   +           E     I  Q+          VE  
Sbjct: 182 RMPDATQRLNLLFSATLSYRVQELA---------FEHMTNPIHVQVEPSQKTGKRIVEEL 232

Query: 563 SARTQVEDVYDEINLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
               QV+ +   + +  ++   + ++   TK M E +  +L   + RV  +  +V   +R
Sbjct: 233 FHPAQVDKIPLLLTIIEEEWPEKAIVFSNTKHMCETVYAWLKAADHRVGLLTGDVNQKKR 292

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           I I+     G  D LV  ++   GL IPE   V   D             +  IGR  R 
Sbjct: 293 ISILEQFTAGNLDFLVATDVAARGLHIPEVSHVFNFD-----LPDDCEDYVHRIGRTGRA 347

Query: 682 V-NSKVILYADTITKSIQLAIDE 703
             + K I +A          I+E
Sbjct: 348 GASGKAISFACEQYAYNLQPIEE 370


>gi|67624743|ref|XP_668654.1| DEAD box polypeptide, Y chromosome-related [Cryptosporidium hominis
           TU502]
 gi|54659828|gb|EAL38390.1| DEAD box polypeptide, Y chromosome-related [Cryptosporidium
           hominis]
          Length = 702

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 77/193 (39%), Gaps = 19/193 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSA---RTQVEDVYDEIN 576
            T++ SAT    E++Q     +   I  T    G     +  R           +  ++ 
Sbjct: 396 QTVMFSAT-FPREIQQLAKDFLHNYIFLTVGRVGATSGSIVQRVVYAEEDHKPRLLVKLL 454

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +GL  ++ V  KR A+ + ++L ++N     +H +    ER   +R  R G+  +L
Sbjct: 455 LEQGEGL-TVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALRLFRSGQRPIL 513

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD----- 691
           V  ++   GLDIP    V  LD        +    +  IGR  R  N+ +          
Sbjct: 514 VATDVAARGLDIPNITHVINLD-----MPCNIDDYVHRIGRTGRAGNTGLATSFVNESNK 568

Query: 692 TITKSIQLAIDET 704
            I + +  A++E+
Sbjct: 569 PILRDLLAALEES 581


>gi|300214210|gb|ADJ78626.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 492

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 77/191 (40%), Gaps = 11/191 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QI--IRPTGLVDPPVEIRSARTQVEDVYDEINLAA- 579
            T++ SAT     L+  +  +V  QI  I+   L    V+    +T+  + +D +     
Sbjct: 177 QTLLFSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRLID 236

Query: 580 -QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L+  L  R      +H ++    R+ ++R  + G  D+LV 
Sbjct: 237 VQAPELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R  +    + +        
Sbjct: 297 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDY 351

Query: 698 QLAIDETTRRR 708
              I++ T++R
Sbjct: 352 LRVIEKLTKKR 362


>gi|269955581|ref|YP_003325370.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304262|gb|ACZ29812.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 605

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 14/190 (7%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINL- 577
           +  T++ SAT PG+      + +     IR     D  V +++ +  V      D+I + 
Sbjct: 252 KRHTMLFSATMPGAVVSMARRYMSQPTHIRAADPDDEGVTVKNIKQVVYRAHALDKIEVL 311

Query: 578 ----AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                A+   R ++   TKR A  +++ L +R      +H ++    R + +R LR GK 
Sbjct: 312 ARLLQAEGRGRSIVFARTKRTAAKVSDELRDRGFAAGAIHGDLGQGAREQALRALRHGKI 371

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
           DVLV  ++   G+D+ +   V             + + +  +GR  R  N    + + D 
Sbjct: 372 DVLVATDVAARGIDVDDVTHVVNYQC-----PEDERTYLHRVGRTGRAGNKGTAVTFVDW 426

Query: 693 ITKSIQLAID 702
                   ID
Sbjct: 427 DDMPRWSLID 436


>gi|29830698|ref|NP_825332.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29607811|dbj|BAC71867.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 502

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 17/157 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D +      A +  R+++ + TK   + LTE+L    +R   +H      +R   +   +
Sbjct: 293 DKHQATTEIAARDGRVIMFLDTKHAVDRLTEHLLSSGVRAAALHGGKSQPQRNRTLSQFK 352

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ +    LV  +D   +         +   GR AR   S  ++ 
Sbjct: 353 TGHVTVLVATNVAARGIHVDNLDLVVNVDPPSD-----HKDYLHRGGRTARAGQSGSVVT 407

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
             T  +           RR+          I PQ+ +
Sbjct: 408 LVTPHQ-----------RRDMSRLMTVA-GIVPQTTQ 432


>gi|66357412|ref|XP_625884.1| Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc)
           [Cryptosporidium parvum Iowa II]
 gi|46226846|gb|EAK87812.1| Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc)
           [Cryptosporidium parvum Iowa II]
 gi|323510023|dbj|BAJ77905.1| cgd4_3000 [Cryptosporidium parvum]
          Length = 702

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 77/193 (39%), Gaps = 19/193 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSA---RTQVEDVYDEIN 576
            T++ SAT    E++Q     +   I  T    G     +  R           +  ++ 
Sbjct: 396 QTVMFSAT-FPREIQQLAKDFLHNYIFLTVGRVGATSGSIVQRVVYAEEDHKPRLLVKLL 454

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L   +GL  ++ V  KR A+ + ++L ++N     +H +    ER   +R  R G+  +L
Sbjct: 455 LEQGEGL-TVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALRLFRSGQRPIL 513

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD----- 691
           V  ++   GLDIP    V  LD        +    +  IGR  R  N+ +          
Sbjct: 514 VATDVAARGLDIPNITHVINLD-----MPCNIDDYVHRIGRTGRAGNTGLATSFVNESNK 568

Query: 692 TITKSIQLAIDET 704
            I + +  A++E+
Sbjct: 569 PILRDLLAALEES 581


>gi|313887901|ref|ZP_07821580.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846067|gb|EFR33449.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 544

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 65/177 (36%), Gaps = 10/177 (5%)

Query: 524 TTIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA- 579
            T+  SAT  +   E     Q    + II    L    +E            + +N    
Sbjct: 177 QTLFFSATFDNDIKEFSRLYQVDPAKVIIEKKELTAEKIEQFYLELNRNMKTEILNRLIL 236

Query: 580 -QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             +  + ++   TKRM E L   + +R  +V  +H +++   R  +++  R G  DVL+ 
Sbjct: 237 IHKPKKSIIFCNTKRMVEALELEIAQRGYKVDSLHGDMRQSSRDNVMKKFRNGTIDVLIA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            ++   GLD+ +  LV   D       +     +  IGR AR           T   
Sbjct: 297 TDVAARGLDVSDIDLVFNYD-----LPQQAEYYVHRIGRTARAGKKGASFTFVTSRD 348


>gi|73662111|ref|YP_300892.1| ATP-dependent RNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123643052|sp|Q49Z29|Y802_STAS1 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SSP0802
 gi|72494626|dbj|BAE17947.1| putative ATP-dependent RNA helicase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 506

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 79/201 (39%), Gaps = 33/201 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART-----QVEDVYDEINLA 578
            T++ SAT     + +    +V+Q ++       PV +++        Q+E+ Y  +   
Sbjct: 177 QTMLFSAT-----MPKAIQTLVQQFMK------SPVIVKTMNNEMSDPQIEEYYTIVKEL 225

Query: 579 -----------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
                        Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++ 
Sbjct: 226 EKFDTFTSFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKK 285

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV- 686
            +  + D+LV  ++   GLDI     V   D       +   S    IGR  R     V 
Sbjct: 286 FKNDQLDILVATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKKGVA 340

Query: 687 ILYADTITKSIQLAIDETTRR 707
           I + + I       I++  +R
Sbjct: 341 ITFVNPIEMDYIRQIEQANKR 361


>gi|325283382|ref|YP_004255923.1| DEAD/DEAH box helicase domain-containing protein [Deinococcus
           proteolyticus MRP]
 gi|324315191|gb|ADY26306.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
           MRP]
          Length = 612

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 91/257 (35%), Gaps = 27/257 (10%)

Query: 524 TTIVVSATPGSWELEQCQG-----IIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEI 575
            T++ SAT                ++V+ +          VE   +R  R++   + D +
Sbjct: 176 QTLLFSATLTPEIRRLSNKYLNDPLVVDMVGEGKSQAAQTVEHLKVRVGRSRTRVLADLL 235

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   + ++   TKR  ++L   L  R      +H ++   +R   +   R G+  +
Sbjct: 236 --TVYNPEKAIVFTRTKRETDELALELIHRGFEAEALHGDLAQNQRERALGSFRSGRTSI 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
           LV  ++   GLDIPE  LV      +    +   S +   GR  R   +   +I+Y D  
Sbjct: 294 LVATDVAARGLDIPEVDLVV-----QYHLPQDPESYVHRSGRTGRAGRAGTAIIMYGDRE 348

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE----KIMEVIDPILLEDAATTNISID 749
            + I      T  R        ++    P+ V+E       E++  +  E AA      +
Sbjct: 349 QRDINGLERVTGVR------FTERPLPTPREVQEASAHASSEMLRRVDAEAAAGFMEQAE 402

Query: 750 AQQLSLSKKKGKAHLKS 766
           A    +  +     L  
Sbjct: 403 ALLEEMGAEALARALAK 419


>gi|319899018|ref|YP_004159111.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
 gi|319402982|emb|CBI76535.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
          Length = 454

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 81/255 (31%), Gaps = 23/255 (9%)

Query: 524 TTIVVSATPGSWELEQC----QGIIVEQIIRPTGLVDPPVE--IRSARTQVED---VYDE 574
            T+  SAT      +         I  +I +         +  ++S     +    + + 
Sbjct: 184 QTLFFSATMAPEITQLTKKFLHSPIYVEITKTFSTAKTITQRLVKSGSKPWDKRAILREL 243

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I+    +    ++    K+   +L   L + N  V  +H ++    R   + + +  K  
Sbjct: 244 IHKEGDELKNAIIFCNRKKDISELFRSLVKHNFSVGALHGDMDQHSRTNTLANFKDNKLT 303

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTI 693
           +LV  ++   GLDIP    V   D             I  IGR  R   N K        
Sbjct: 304 LLVASDVAARGLDIPAVSHVFNYDV-----PTHAEDYIHRIGRTGRAKRNGKAFTIVTKA 358

Query: 694 TKSIQLAIDETTRRREKQLEHN------KKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
            +    AI+E ++  EK    N        H+    ++ +           +    T   
Sbjct: 359 DEKYINAIEEISK--EKIEWLNGDLSTLIAHDETNDTISKAKPTKSRQKTAQKEHKTQTK 416

Query: 748 IDAQQLSLSKKKGKA 762
              ++   S ++ + 
Sbjct: 417 KMLKKQKSSNQRHEK 431


>gi|163916596|gb|AAI57756.1| LOC734085 protein [Xenopus (Silurana) tropicalis]
          Length = 758

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 94/258 (36%), Gaps = 35/258 (13%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRP----TGLVDPPVEI--------RSARTQVED 570
           P T++ SAT   W     +  + +Q  +            + +        RS +  V  
Sbjct: 362 PQTLLFSATCPDWMYNVAKKYMKKQFEKIDLVGHRSQKAAITVEHLAIECTRSQKAAV-- 419

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D + + +    + ++   +K  A +L           + +H +++  ER  I++  R 
Sbjct: 420 LGDIVQVYSGSHGKSIIFCDSKLEAHELATNCGSLKQSAKPLHGDLQQKEREVILKGFRQ 479

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G F+VLV  N+   GLDIPE  LV +  A KE       + +   GR  R   + + +  
Sbjct: 480 GSFEVLVATNVAARGLDIPEVDLVVLYSAPKE-----ADAYVHRSGRTGRAGRTGICISL 534

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISI 748
                            RE+    N +    I  + V    +  +      DA  +  S+
Sbjct: 535 YEP--------------RERHYLRNVERSTGITFKRVGIPSLLNVAKSSSADAIKSLDSV 580

Query: 749 DAQQLSLSKKKGKAHLKS 766
            A  +   K+  +  ++ 
Sbjct: 581 PADVIEHFKEYAQELIEK 598


>gi|157144489|ref|YP_001451808.1| ATP-dependent RNA helicase SrmB [Citrobacter koseri ATCC BAA-895]
 gi|157081694|gb|ABV11372.1| hypothetical protein CKO_00206 [Citrobacter koseri ATCC BAA-895]
          Length = 445

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 76/201 (37%), Gaps = 17/201 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT     +      ++E  +    T       +I     + +D+  +  L  
Sbjct: 181 RKQTMLFSATLEGGAINDFAERLLEDPVEVSATPSTRERKKIHQWYYRADDIQHKTALLV 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELAGWLREAGINNCYLEGEMVQGKRNEAIKRLTDGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VL+  ++   G+DIP+   V   D  +     S  + +  IGR  R       +      
Sbjct: 301 VLIATDVAARGIDIPDVSHVFNFDMPR-----SSDTYLHRIGRTGRAGRKGTAISLVEAH 355

Query: 695 KSIQLA-----IDETTRRREK 710
             + L      I+ET + R  
Sbjct: 356 DHLLLGKVGRYIEETLKARVI 376


>gi|319426890|gb|ADV54964.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 427

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 108/317 (34%), Gaps = 49/317 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L + +  +++         + ++S +   +  R  +L   GF   L   +D  P++
Sbjct: 142 TPGRLLDLLSSNAI--------KLNRVSALVLDEADRMLSL---GFTEELTQVLDALPVK 190

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT--GLVDPPVEIRSARTQVEDVY 572
                     T++ SAT    E+ +    ++   +        +  +  R          
Sbjct: 191 --------KQTLLFSAT-FPEEVRELTAKLLNNPLEYQLQSEQESTIHQRVITVNRPMKT 241

Query: 573 DEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             +    ++ L  + L+ V  K     L + L +R I     H +     R  ++   + 
Sbjct: 242 ALLAHLIKEHLWSQALIFVSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKN 301

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+  VL+  ++   G+DI +  +V   D       RS    +  IGR+ R   + + +  
Sbjct: 302 GEISVLIATDIAARGIDIDKLPVVINFD-----LPRSPADYMHRIGRSGRAGEAGLAVTL 356

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
            +        + E         + NK          + + E I     +D     +   A
Sbjct: 357 ISHEDYHHFGVIE---------KKNK---------LKLVREQIVGFEADDDMPAELLEQA 398

Query: 751 QQLSLSKKKGKAHLKSL 767
           + ++  +  GK   K L
Sbjct: 399 KPVAKPEGTGKKKRKQL 415


>gi|324499931|gb|ADY39982.1| ATP-dependent RNA helicase DDX4 [Ascaris suum]
          Length = 1066

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 8/132 (6%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V  K   + +  YL    IR   +H + +  +R + +++ R G   VL+  ++  
Sbjct: 846 RTLVFVTRKVDTDTVAMYLSSNGIRACSIHGDREQDQREKALKEFRSGSVKVLLATDVCA 905

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            G+D+     V   D   E         +  IGR  R    K   + D + +    A+  
Sbjct: 906 RGIDVNNLEHVINYDLPTE-----WIIYVHRIGRTGRMHAGKATSFIDPM-EPHDRAMAS 959

Query: 704 TTRR--REKQLE 713
              R  RE Q E
Sbjct: 960 DLLRIVREVQQE 971


>gi|314927518|gb|EFS91349.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
 gi|328907794|gb|EGG27557.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium sp.
           P08]
          Length = 536

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 72/189 (38%), Gaps = 17/189 (8%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-----DVYDEIN 576
            T++ SAT P     L + Q      + R  G  D    +   +  V      D  + I 
Sbjct: 218 QTMLFSATMPAPIMALARSQLNRPVHV-RAEG-ADTQATVPDTQQFVYQAHPLDKIEIIG 275

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              Q     ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G   
Sbjct: 276 RILQANDAEKVIIFCRTKRACQRLSDDLNDRGFKARAIHGDLTQVAREKALKRFRHGDVT 335

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           +LV  ++   G+D+     V   +         + + +  IGR  R     V +   D  
Sbjct: 336 ILVATDVAARGIDVTGVSHVINHEC-----PEDEKTYVHRIGRTGRAGTKGVAVTLVDWA 390

Query: 694 TKSIQLAID 702
             +    ID
Sbjct: 391 DVTRWKLID 399


>gi|224121758|ref|XP_002318665.1| predicted protein [Populus trichocarpa]
 gi|222859338|gb|EEE96885.1| predicted protein [Populus trichocarpa]
          Length = 541

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 66/181 (36%), Gaps = 14/181 (7%)

Query: 524 TTIVVSAT-PGSWEL-------EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E+          + II    ++    ++  VE+     +   +   +
Sbjct: 300 QTLYWSATWPREVEILARQFLHNAYKVIIGSADLKANQSINQVVEVIMDMEKYNRLIKLL 359

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G RIL+ + TK+  + +T  L         +H +    ER  ++ + + G+  +
Sbjct: 360 KEVMD-GSRILIFMETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSAI 418

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  S    +  IGR  R           T + 
Sbjct: 419 MTATDVAARGLDVKDIKCVINYD-----FPSSLEDYVHRIGRTGRAGARGTAFTFFTDSN 473

Query: 696 S 696
           +
Sbjct: 474 A 474


>gi|145629971|ref|ZP_01785753.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|144984252|gb|EDJ91675.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
          Length = 415

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 90/252 (35%), Gaps = 34/252 (13%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +DE  V +         +  R   L   GF        R +R+    C 
Sbjct: 145 IDYV-KQGVICLDEIQVVV-------LDEADRMFDL---GFI-------RDIRYLLRKCP 186

Query: 522 RPT---TIVVSATPGSWELEQCQGIIVE------QIIRPTGLVDPPVEIRSARTQVEDVY 572
            P    T++ SAT      E     + +      +  + TG      E+     Q +   
Sbjct: 187 APQARLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKE-ELFYPSNQDKMAL 245

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               +  +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G 
Sbjct: 246 LLTLMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGN 305

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
            D+LV  ++   GL I +   V   D         +   +  IGR  R   S V I +A 
Sbjct: 306 LDILVATDVAARGLHISDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFAC 360

Query: 692 TITKSIQLAIDE 703
                   AI+E
Sbjct: 361 EEYAMNLPAIEE 372


>gi|326933365|ref|XP_003212776.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like [Meleagris
           gallopavo]
 gi|82197804|sp|Q5ZKB9|DDX6_CHICK RecName: Full=Probable ATP-dependent RNA helicase DDX6; AltName:
           Full=DEAD box protein 6
 gi|53131507|emb|CAG31824.1| hypothetical protein RCJMB04_11n24 [Gallus gallus]
          Length = 483

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D             L    + + L +     L     + S
Sbjct: 242 MIVLDEADKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 290

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ + +    V    ++           + +    Q    I +  
Sbjct: 291 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFC 341

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI 
Sbjct: 342 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 401

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 402 AVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 451


>gi|319404344|emb|CBI77941.1| ATP-dependent RNA helicase [Bartonella rochalimae ATCC BAA-1498]
          Length = 466

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 67/193 (34%), Gaps = 15/193 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVE--IRSARTQVED---VYDE 574
            T+  SAT      +  +  +      +I   +       +  ++S     +    + + 
Sbjct: 184 QTLFFSATMAPEIAQLTKQFLHSPVYIEITEASSTAKTITQRLVKSGSKSCDKKAVLKEL 243

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I     +    ++    K+   +L +YL + N  V  +H ++    R   +   +  KF 
Sbjct: 244 IQNEGDELKNAIIFCNRKKDISELFQYLIKHNFSVGTLHGDMDQHSRTNTLASFKNNKFI 303

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTI 693
           +L+  ++   GLDIP    V   D             I  IGR  R   S K        
Sbjct: 304 LLIASDVAARGLDIPAVSHVFNYDV-----PTHAEDYIHRIGRTGRAKRSGKAFTIVTKA 358

Query: 694 TKSIQLAIDETTR 706
            +    AI+E ++
Sbjct: 359 DEKYIRAIEEISK 371


>gi|254776598|ref|ZP_05218114.1| RhlE [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 505

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 7/134 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   +  A  +G   ++   TKR A+ + + L ER  +V  +H ++  + R + ++  R
Sbjct: 251 ELVSRVLQAESRG-ATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKAFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G  DVLV  ++   G+DI +   V             + + +  IGR  R   + V + 
Sbjct: 310 TGDIDVLVATDVAARGIDIDDVTHVINY-----QIPEDEQAYVHRIGRTGRAGKAGVAVT 364

Query: 689 YADTITKSIQLAID 702
             D    +    ID
Sbjct: 365 LVDWDELARWALID 378


>gi|118097368|ref|XP_425202.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
           [Gallus gallus]
          Length = 617

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ I    G  
Sbjct: 343 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPITINVGRA 396

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 397 GAASLDVVQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 455

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 456 AIHGGKDQEERTKAIEAFRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 510

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 511 YVHRIGRTGRSGNTGIATTF------INKACDES 538


>gi|157817692|ref|NP_001102762.1| hypothetical protein LOC500988 [Rattus norvegicus]
 gi|149041488|gb|EDL95329.1| rCG58047 [Rattus norvegicus]
          Length = 483

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D             L    + + L +     L     + S
Sbjct: 242 MIVLDEADKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 290

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ + +    V    ++           + +    Q    I +  
Sbjct: 291 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFC 341

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI 
Sbjct: 342 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 401

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 402 AVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 451


>gi|296201836|ref|XP_002748197.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 4
           [Callithrix jacchus]
          Length = 535

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++  + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  
Sbjct: 260 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 319

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           ++   GLD+ +   V   D     +  S    I  IGR AR+  +       T   
Sbjct: 320 DVASRGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 370


>gi|255635856|gb|ACU18275.1| unknown [Glycine max]
          Length = 413

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 377 GVAINFVTRDDEKMLFDI 394


>gi|163868127|ref|YP_001609331.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
 gi|161017778|emb|CAK01336.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
          Length = 467

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 65/192 (33%), Gaps = 15/192 (7%)

Query: 524 TTIVVSATPGSWELEQC----QGIIVEQIIRPTGLVDPPVE--IRSARTQVED---VYDE 574
            T+  SAT      +         +  ++ + +       +  ++S     +    + + 
Sbjct: 184 QTLFFSATMAPEITKLTKQFLHSPVSVEVTKASSTATTVTQRLVKSGNKSWDKRAVLREL 243

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I     +    ++    KR   +L   L + N  V  +H ++    R+  + D +  K  
Sbjct: 244 IQNEGSKLQNAIIFCNRKRDISELFRSLIKHNFNVGALHGDMDQYSRMNTLADFKNNKLT 303

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTI 693
           +LV  ++   GLDIP    V   D             I  IGR  R N   K        
Sbjct: 304 LLVASDVAARGLDIPAVSHVFNYDV-----PTHAEDYIHRIGRTGRANRLGKAFTIVTKA 358

Query: 694 TKSIQLAIDETT 705
            +    AI+E +
Sbjct: 359 DQKYINAIEEMS 370


>gi|117620754|ref|YP_854622.1| ATP-dependent RNA helicase RhlB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|189040024|sp|A0KEG9|RHLB_AERHH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|117562161|gb|ABK39109.1| ATP-dependent RNA helicase RhlB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 429

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 87/253 (34%), Gaps = 34/253 (13%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNR 511
           + +Y        +D     +  I  +   +  R   L   GF         R+P   +  
Sbjct: 145 IIDYFKSK---VID-----LSNIQVVVLDEADRMFDL---GFIKDIRFLFRRMPPATERL 193

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            + F     LR   +       ++E       +  +  + TG+     E+     + + +
Sbjct: 194 SMLFSATLSLRVQEL-------AYEHMNHPEHVQIEPEQMTGVRIKE-ELFYPSNEDKML 245

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                +  +   + ++   TK + ED+  +L     RV  +  +V   +R++I+ D   G
Sbjct: 246 LLLSLMEEEWPEKAIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKG 305

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYA 690
             D+LV  ++   GL IP+   V   D             +  IGR  R   S   I  A
Sbjct: 306 TVDILVATDVAARGLHIPDVTHVFNYD-----LPDDAEDYVHRIGRTGRAGKSGHSISLA 360

Query: 691 DTITKSIQLAIDE 703
                    AI+E
Sbjct: 361 CEDYAFNLPAIEE 373


>gi|109900519|ref|YP_663774.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas atlantica T6c]
 gi|122971428|sp|Q15N18|RHLB_PSEA6 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|109702800|gb|ABG42720.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 421

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 84/254 (33%), Gaps = 35/254 (13%)

Query: 474 DESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLRPT 524
           D     I  ++G+          + + GF         R+P   +   + F      R  
Sbjct: 144 DYYKQNIFSLAGIQVAVLDEADRMFDLGFIKDIRYLFNRMPKPTERLSMLFSATLSYRVQ 203

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL- 583
            +       ++E       +  +  R TG          +    ED    +    ++   
Sbjct: 204 EL-------AYEHMDNPTHVQVEPERKTGTRIKEELFYPSD---EDKMALLLSLMEEEWP 253

Query: 584 -RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++   TK   E + ++L     RV  +  +V   +R++I+ D   GK D+LV  ++ 
Sbjct: 254 DKAIVFANTKHSCEKVADWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDILVATDVA 313

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT--------I 693
             GL IP    V   D             +  IGR  R   S   I +A          I
Sbjct: 314 ARGLHIPMVSHVFNYD-----LPDDAEDYVHRIGRTGRAGQSGSSISFACERYALNLPAI 368

Query: 694 TKSIQLAIDETTRR 707
              I+ AI  T  +
Sbjct: 369 ETYIEHAIPVTEYQ 382


>gi|157155812|ref|YP_001463900.1| ATP-dependent RNA helicase SrmB [Escherichia coli E24377A]
 gi|191167986|ref|ZP_03029788.1| ATP-dependent RNA helicase SrmB [Escherichia coli B7A]
 gi|300817647|ref|ZP_07097862.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300927047|ref|ZP_07142799.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|301330322|ref|ZP_07222969.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|307313853|ref|ZP_07593469.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|309794370|ref|ZP_07688793.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|157077842|gb|ABV17550.1| ATP-dependent RNA helicase SrmB [Escherichia coli E24377A]
 gi|190901993|gb|EDV61740.1| ATP-dependent RNA helicase SrmB [Escherichia coli B7A]
 gi|300416931|gb|EFK00242.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|300529635|gb|EFK50697.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300843656|gb|EFK71416.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|306906354|gb|EFN36869.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|308121826|gb|EFO59088.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|315061895|gb|ADT76222.1| ATP-dependent RNA helicase [Escherichia coli W]
 gi|323377524|gb|ADX49792.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
          Length = 444

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 89/253 (35%), Gaps = 17/253 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT  G    +  + ++ + + +          +I     + +D+  +  L  
Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DIP+   V   D  + G      + +  IGR AR       +      
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSG-----DTYLHRIGRTARAGRKGTAISLVEAH 355

Query: 695 KSIQLA-----IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
             + L      I+E  + R       K    + +   +   +V+     +          
Sbjct: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKVKEKEKPR 415

Query: 750 AQQLSLSKKKGKA 762
            ++     K    
Sbjct: 416 VKKRHRDTKNIGK 428


>gi|313358754|gb|ADR51551.1| vasa-like protein variant 1 [Scylla paramamosain]
 gi|313358756|gb|ADR51552.1| vasa-like protein variant 2 [Scylla paramamosain]
 gi|313358758|gb|ADR51553.1| vasa-like protein variant 3 [Scylla paramamosain]
          Length = 632

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 5/134 (3%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + + + +        ++L+ V  KR A+ +  YL     R   +H      +R E +   
Sbjct: 435 DKLAEYLRSFEDSQEKVLVFVEMKRQADFVGTYLSTNGFRSVTLHGGRYQEQREEALSAF 494

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R  ++ VLV  ++   GLDI   G V   D  K     S    +  IGR  R  N    +
Sbjct: 495 RSNQYRVLVATSVAARGLDIRGVGYVINYDLPK-----SADEYVHRIGRTGRVGNRGQAV 549

Query: 689 YADTITKSIQLAID 702
                 + + LA D
Sbjct: 550 SFYDPEQDLNLAKD 563


>gi|148255365|ref|YP_001239950.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
 gi|146407538|gb|ABQ36044.1| Putative ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
          Length = 478

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 64/190 (33%), Gaps = 18/190 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE--QIIRPTGLVDPPVEI--------RSARTQVEDVYD 573
            T+  +AT    E+ +     +   Q +  +      V +        R A  + E +  
Sbjct: 179 QTLFFTAT-MPPEIRRVTETFLHNPQKVEVSRPATTAVTVTQLQVPGGREAHQKREVLRK 237

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +  A       ++    KR    L + L +    V  +H ++    R+  +   R G+ 
Sbjct: 238 LLREAKDLK-NAIIFCNRKRDVAILHKSLQKHGFSVCALHGDMDQSARMAALDQFRKGEL 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
            +LV  ++   GLDIPE   V   D             +  IGR  R   +   I     
Sbjct: 297 PLLVASDVAARGLDIPEVSHVFNFDV-----PHHSDDYVHRIGRTGRAGRTGTAISIVSP 351

Query: 693 ITKSIQLAID 702
             +    AI+
Sbjct: 352 ADQKSITAIE 361


>gi|134114846|ref|XP_773721.1| hypothetical protein CNBH1760 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256349|gb|EAL19074.1| hypothetical protein CNBH1760 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 546

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 65/193 (33%), Gaps = 13/193 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIR----SARTQVEDVYDEIN 576
             ++ SAT      E       E     +R   +    +        +  Q  +    + 
Sbjct: 324 QNVLFSATFNDDVQEFADRFAPEANKIFLRKEDITVDAIRQLYLECDSEDQKYEALSALY 383

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G  I +    K  A+ + E L      V  +H +  + ER  I+   R G+  VL
Sbjct: 384 DCLVIGQSI-VFCKRKVTADHIAERLISEGHAVASLHGDKLSQERDAILDGFRNGETKVL 442

Query: 637 VGINLLREGLDIPECGLVAILDADKEGF---LRSKTSLIQTIGRAARNVN--SKVILYAD 691
           +  N++  G+DIP   +V   D    G         + I  IGR  R       VI   D
Sbjct: 443 ITTNVIARGIDIPAVNMVVNYDVPDLGPGGNGPDIETYIHRIGRTGRFGRKGCSVIFTHD 502

Query: 692 TITKSIQLAIDET 704
             +KS    I  T
Sbjct: 503 YRSKSDVERIMNT 515


>gi|224824286|ref|ZP_03697394.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224603705|gb|EEG09880.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 417

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 12/186 (6%)

Query: 524 TTIVVSAT--PGSWEL-EQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQVEDVYDEINL 577
             ++ SAT  P    L EQ     +   I  T    P +  R+     +Q   +   +  
Sbjct: 177 QNLLFSATFPPAVHSLAEQLLSQPLRIDIAQTAATAPDIHQRAIEVDASQRTMLLRHLLQ 236

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                 R+L+ V +++ A+ +T  L    IR   +H +    +R +++ DL+ G+  VLV
Sbjct: 237 T-HGWDRVLVFVASRQAADRVTGKLQRAGIRAAALHGDCSQGQRGQVLADLKSGQLQVLV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   G+DIP   +V   D       RS       IGR  R       +   +   + 
Sbjct: 296 ATDVAARGIDIPLLPVVVNYD-----LPRSPVDYTHRIGRTGRAGARGEAISFISADCAA 350

Query: 698 QLAIDE 703
              + E
Sbjct: 351 HFQLIE 356


>gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4]
          Length = 499

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 104/256 (40%), Gaps = 16/256 (6%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT PG   ++ +      E + ++   +    ++    + Q  + +D +     
Sbjct: 177 QTLLFSATMPGPIRKIAENFMTNPETVKVKSKEMTVSLIDQYFVKAQEREKFDILARLLD 236

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L++ L  R  +   +H ++   +R  ++R  + G+ +VLV 
Sbjct: 237 TQSPELAIVFGRTKRRVDELSKALSIRGYQAEGIHGDLSQAKRSSVLRKFKEGRIEVLVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI     V   D       +   S +  IGR  R     + +   T  +   
Sbjct: 297 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKEGMAMTFVTPREMGY 351

Query: 699 LAIDE-TTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
           L I E TT +R   +     N+      +  KEK++E I+   L++     +  +     
Sbjct: 352 LRIVEQTTNKRMTPMRPPSVNEALEGQQRLAKEKLVEAINSNGLDEYE--KLVAELLGEY 409

Query: 755 LSKKKGKAHLKSLRKQ 770
             ++   A LK   K+
Sbjct: 410 TPEQVIAASLKLFTKE 425


>gi|88811449|ref|ZP_01126704.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231]
 gi|88791338|gb|EAR22450.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231]
          Length = 437

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 79/231 (34%), Gaps = 23/231 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLR 522
            +D     +  +  +          + + GF         R+P   D   + F      R
Sbjct: 143 IIDFYKQRVFSLDNIEVVVLDEADRMFDMGFITDVRYLLRRMPPAPDRINMLFSATLSER 202

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
              +          +      +  + +R          + SA  ++  +   +    Q  
Sbjct: 203 VKELAYEHMNAPETIAIEPEQVTAEKVR-----QSLYHVASAD-KIGLLLGVL--RQQDA 254

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R L+ V TKR AE +T YL         +  ++   +R ++++  + GK  +LV  ++ 
Sbjct: 255 TRTLVFVNTKRDAERVTAYLVGNGFDAEVISGDIPQKKREQLLQRFQEGKLPMLVATDVA 314

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
             GL IP+   +   D       ++    +  IGR AR   S   I +A  
Sbjct: 315 ARGLHIPDVSRIVNYD-----LPQNAEDYVHRIGRTARAGASGDAISFACE 360


>gi|86138673|ref|ZP_01057246.1| putative ATP-dependent RNA helicase protein [Roseobacter sp.
           MED193]
 gi|85824733|gb|EAQ44935.1| putative ATP-dependent RNA helicase protein [Roseobacter sp.
           MED193]
          Length = 431

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 66/188 (35%), Gaps = 9/188 (4%)

Query: 524 TTIVVSAT-PGSW-ELEQCQGIIVEQI-IRPTGLVDPPVE--IRSARTQVEDVYDEINLA 578
            T++ SAT P    E+         +I + P G     V   +       +    +  L 
Sbjct: 176 QTMLFSATMPKQMNEIANSYLNRPVRIEVTPPGKPAAKVTQSVHFIAKAEKLSLLKELLT 235

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             +  R L+   TK   E L + L +       +H      +R   +   + G+  VLV 
Sbjct: 236 EHKDERTLVFGRTKHGMEKLMKVLEKSGFAAAAIHGNKSQGQRERALAAFKSGQIKVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT--KS 696
            ++   GLDIP+   V   +        +    I    RA ++  +      D +   K+
Sbjct: 296 TDVAARGLDIPDVKYVYNYELP--NVPDAYVHRIGRTARAGKDGQAVAFCSPDEMEELKA 353

Query: 697 IQLAIDET 704
           IQ  +  T
Sbjct: 354 IQKVMKIT 361


>gi|303282327|ref|XP_003060455.1| DEAD/DEAH box helicase [Micromonas pusilla CCMP1545]
 gi|226457926|gb|EEH55224.1| DEAD/DEAH box helicase [Micromonas pusilla CCMP1545]
          Length = 671

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 83/232 (35%), Gaps = 23/232 (9%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            + + GF      D+    +  +   R  T++ SAT      +  +  +V  I+   G  
Sbjct: 392 RMVDLGFE-----DDIRDIYSFFKSQR-QTLLFSATMPVKIRKFAESALVNPIVVNVGRA 445

Query: 555 ----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + Q   +   +    +    +L+    K   +D+ EYL  + +   
Sbjct: 446 GAANLDVIQEVEYVK-QEAKIVYLLECLQKTAPPVLIFCENKADVDDIHEYLLLKGVEAV 504

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER   I + +  + DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 505 AIHGGKGQDERDWGISEFKSERKDVLVATDVAGKGLDFPNIQHVINYDMPEE-----IEN 559

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
            +  IGR  R   + +        +S    +D       K L    K  I P
Sbjct: 560 YVHRIGRTGRCGKTGIATTFINKNQSETTLLD------LKHLLREAKQRIPP 605


>gi|195379282|ref|XP_002048409.1| GJ13954 [Drosophila virilis]
 gi|194155567|gb|EDW70751.1| GJ13954 [Drosophila virilis]
          Length = 605

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G   VL+   L+  
Sbjct: 375 VLVFVQSKDRAKQLFEELLYDGINVDVIHAERTQHQRDNCVRAFREGHIWVLICTELMGR 434

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           G+D     LV   D     F  S  S I  IGR  R       I +      +   +I +
Sbjct: 435 GIDFKGVNLVINYD-----FPPSTISYIHRIGRTGRAGRPGRAITFFTQDDTANLRSIAQ 489


>gi|34541680|ref|NP_906159.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis W83]
 gi|34397998|gb|AAQ67058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Porphyromonas
           gingivalis W83]
          Length = 427

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++    K    +LT  L +    V  MHS+++  +R +++RD + G  DVLV  +++ 
Sbjct: 246 RTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVDVLVATDIVA 305

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            G+DI    +V   D             +  IGR AR  N 
Sbjct: 306 RGIDIDNIRVVINYD-----IPHDPEDYVHRIGRTARGTNG 341


>gi|213964614|ref|ZP_03392814.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46]
 gi|213952807|gb|EEB64189.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46]
          Length = 702

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 15/192 (7%)

Query: 523 PTTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
               + SAT            L + + I V+   R    +     + S R +++ +   +
Sbjct: 236 KQVALFSATMPASIRRLSKQYLTEPEEITVKSQTRTADNIRQRFLMVSHRNKLDALTRIL 295

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               ++   +++ V TK   E+L E L  R      ++ ++    R   I  L+ G+ D+
Sbjct: 296 E--VEEFEAMIMFVRTKHETEELAEKLRARGFSAAAINGDIPQTLRERTIDQLKDGRLDI 353

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLD+     V   D           S +  IGR  R   S   +L+     
Sbjct: 354 LVATDVAARGLDVDRISHVVNYD-----IPHDTESYVHRIGRTGRAGRSGEALLFVTPRE 408

Query: 695 KSIQLAIDETTR 706
             +  +I+  T+
Sbjct: 409 GRLLRSIERATK 420


>gi|182677108|ref|YP_001831254.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182632991|gb|ACB93765.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 484

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 64/196 (32%), Gaps = 23/196 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------EDVYDEI 575
            T+  SAT    E+ +     +   +R              +  V         +   ++
Sbjct: 179 QTLFFSAT-MPPEITRLTETFLHNPVRIEVARASSTATTITQGLVASAHGPAKRETLRQL 237

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A+     ++    KR    L + L +       +H ++    R+  +   + G  ++
Sbjct: 238 IRGAENLKNAIIFCNRKRDVAVLHKSLQKHGFSAGALHGDMDQRARMTSLDAFKSGDVNL 297

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL------- 688
           LV  ++   GLDIP+   V   D             +  IGR  R   S V L       
Sbjct: 298 LVCSDVAARGLDIPDVSHVFNFDV-----PTHAEDYVHRIGRTGRAGRSGVALSIVTSAD 352

Query: 689 --YADTITKSIQLAID 702
             Y D I K I   ID
Sbjct: 353 RKYVDEIEKLIARKID 368


>gi|111219903|ref|YP_710697.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni
           ACN14a]
 gi|111147435|emb|CAJ59085.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni
           ACN14a]
          Length = 608

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 67/196 (34%), Gaps = 14/196 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           +  T++ SAT      +  +  + + +    G   P         QV  V       A  
Sbjct: 233 KRQTVLFSATLPPRMDQIARRHLRDPVRIQIGRAAPEPGAAPLVRQVSYVVPRAYKTAAL 292

Query: 582 GL--------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           G           ++   T+   + L + L  R  R   +H  +   +R  ++  LR    
Sbjct: 293 GRILDVESPRSAIVFCRTREEVDQLADSLNGRGYRAESLHGGMSQEQRERVMERLRTATA 352

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
           D+LV  ++   GLD  +   V            +  S +  IGR  R     V I  A+ 
Sbjct: 353 DLLVATDVAARGLDFEQLTHVVNYSV-----PSAPDSYVHRIGRVGRAGREGVAITLAEP 407

Query: 693 ITKSIQLAIDETTRRR 708
               +   I+  TR+R
Sbjct: 408 REHRMLKTIERVTRQR 423


>gi|124505577|ref|XP_001351530.1| eukaryotic initiation factor, putative [Plasmodium falciparum 3D7]
 gi|23498289|emb|CAD49261.1| eukaryotic initiation factor, putative [Plasmodium falciparum 3D7]
 gi|117956286|gb|ABK58711.1| eIF4A-like protein [Plasmodium falciparum]
          Length = 390

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 22/199 (11%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE---IRSARTQVE- 569
            +       I+ SAT     LE     +   V+ +++   L    ++   +   + Q + 
Sbjct: 185 RFLSPNTQIILSSATLPQEVLEITNKFMHKPVKILVKRDELTLEGIKQFFVSIEKEQWKY 244

Query: 570 ----DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
               D+Y+ + +      + ++   T+   + LT+ + E N  V  MH+ +   ER +I+
Sbjct: 245 ETLADLYESLTIT-----QAVVFCNTQMKVDWLTKKMLESNFTVCKMHAGMSQSERDDIM 299

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R  KF VL+  ++   GLD+ E  LV   D        S+ S I  IGR+ R     
Sbjct: 300 LKFRQCKFRVLISTDIWGRGLDVQEVSLVVNYD-----LPNSRESYIHRIGRSGRFGRKG 354

Query: 686 V-ILYADTITKSIQLAIDE 703
           V I +       I   I++
Sbjct: 355 VAINFVKNDDIKILRDIEQ 373


>gi|291406387|ref|XP_002719528.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 1
           [Oryctolagus cuniculus]
          Length = 535

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++  + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  
Sbjct: 260 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 319

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           ++   GLD+ +   V   D     +  S    I  IGR AR+  +       T   
Sbjct: 320 DVASRGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 370


>gi|260912843|ref|ZP_05919329.1| ATP-dependent RNA helicase RhlB [Pasteurella dagmatis ATCC 43325]
 gi|260633221|gb|EEX51386.1| ATP-dependent RNA helicase RhlB [Pasteurella dagmatis ATCC 43325]
          Length = 449

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 136/388 (35%), Gaps = 48/388 (12%)

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTA-MKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           TG+ +  +     +  +H      +   A +     EL +++        L +A  L+  
Sbjct: 82  TGKTMAFLTATFHHLLTHQSEKNTSQPRALILAPTRELAVQIN--NDAELLSKATNLKTG 139

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISG 485
           + Y  +  E     ++IE     L G         + +Y+ +  ++ +D       QI  
Sbjct: 140 LAYGGDGYE--KQLKTIEKGVDILIGTTGR-----VIDYV-KQGIICLD-------QIQV 184

Query: 486 MYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIV 545
           +   +  R   L   GF      D R L  +        T++ SAT      E     + 
Sbjct: 185 VVLDEADRMFDL---GFI----KDIRYLLRKCPAPEARLTMLFSATLSYKVRELAFEDMN 237

Query: 546 E------QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
           +      + ++ TG      E+     Q +       L  +   R ++   TK   E++ 
Sbjct: 238 DPEYVEIEPLQKTGHRIKE-ELFYPSNQDKMALLLTLLEEEWPERCIVFANTKHRCEEIW 296

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
            YL     RV  +  +V   +R+ +++    G  D+LV  ++   GL I +   V   D 
Sbjct: 297 GYLSADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILVATDVAARGLHISDVTHVFNYD- 355

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
                       +  IGR  R   S V         SI  A +E        +E+   H+
Sbjct: 356 ----LPDDCEDYVHRIGRTGRAGESGV---------SISFACEEYAMNLPA-IENYIAHS 401

Query: 720 I-NPQSVKEKIMEVIDPILLEDAATTNI 746
           I   Q   + ++E+  P  L+ A  T +
Sbjct: 402 IPVSQYDAKALLELPKPHRLKRATHTAM 429


>gi|195977782|ref|YP_002123026.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974487|gb|ACG62013.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 538

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 100/260 (38%), Gaps = 21/260 (8%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT P    E+        E + ++   L +  V+    R + ++ +D +     
Sbjct: 176 QTLLFSATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQEKFDTMTRLMD 235

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            QQ    ++   TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV 
Sbjct: 236 VQQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R   S   I +        
Sbjct: 296 TDVAARGLDISGVTHVYNYDIT-----QDPESYVHRIGRTGRAGKSGESITFVSPNEMGY 350

Query: 698 QLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
              I+  T++R K       +     K  +  + ++    +       E      + + A
Sbjct: 351 LTMIEHLTKKRMKPLKPATAEEAFQAKKKVALKKIERDFADDAIRSNFEKFKGDAMKLAA 410

Query: 751 QQLSLSKKKGKAHLKSLRKQ 770
           +    + ++   ++ SL  Q
Sbjct: 411 EF---TPEELALYILSLTVQ 427


>gi|8489871|gb|AAF75791.1|AF271892_1 DEAD box protein P68 [Pisum sativum]
          Length = 622

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 78/203 (38%), Gaps = 24/203 (11%)

Query: 522 RPTTIVVSAT-PGSWE------LEQCQGIIVEQIIRPT-GLVDPPVEI---RSARTQVED 570
           +  T++ SAT P   E      L     + V ++  PT  +    V++         ++ 
Sbjct: 297 KHQTLLFSATMPVEIEALAKEYLANPVQVKVGKVSSPTTNVSQTLVKVSGSEKIDRLLDL 356

Query: 571 VYDEINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           + +E + A + G R    ++ V  K   +++ E L  + +    +H      ER   +++
Sbjct: 357 LVEEASQAEKCGHRFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGHSQNEREAALQN 416

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            R     +LV  ++   GLD+     V  LD  K     +    I  IGR  R  ++ + 
Sbjct: 417 FRSSSTSILVATDVASRGLDVTGVSHVINLDLPK-----TTEDYIHRIGRTGRAGSTGIA 471

Query: 688 LYADTITK-----SIQLAIDETT 705
               T        +I+ AI +  
Sbjct: 472 TSFYTDRDMFLVTNIRKAIADAE 494


>gi|322373478|ref|ZP_08048014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
 gi|321278520|gb|EFX55589.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
          Length = 528

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 98/261 (37%), Gaps = 23/261 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
            T++ SAT     +++     ++      I+   L +  V+    R + ++ +D +    
Sbjct: 176 QTLLFSAT-MPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLM 234

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ +IRD +  + D+LV
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   S   +      +  
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMG 349

Query: 698 QLAIDET-TRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
            L I E  T++R K       Q     K  +  + ++    +  D  +  +         
Sbjct: 350 YLGIIENLTKKRMKGLKPPTAQEAFQAKKKVALKKIER---DFADEAIRSNFDKFKGDAV 406

Query: 750 AQQLSLSKKKGKAHLKSLRKQ 770
                 + ++   ++ SL  Q
Sbjct: 407 KLAQEFTPEELALYILSLTVQ 427


>gi|302521780|ref|ZP_07274122.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp.
           SPB78]
 gi|302430675|gb|EFL02491.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp.
           SPB78]
          Length = 485

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 12/181 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------EDVY 572
           +  T++ SAT PG+      + +     I  T   D    + +    V         ++ 
Sbjct: 195 KRQTMLFSATMPGAVVALARRYMSQPTHINATSPDDENATVANTEQHVFRAHSMDKPEMV 254

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +GL +++   TKR A D++E L  R      +H ++    R + +R  R GK
Sbjct: 255 ARILQAEGRGL-VMIFCRTKRTAADISEQLQRRGFAAGAVHGDLGQGAREQALRAFRNGK 313

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            DVLV  ++   G+D+     V      ++   ++    I   GRA R+  +  ++  D 
Sbjct: 314 VDVLVCTDVAARGIDVEGVTHVINYQTPEDE--KTYLHRIGRTGRAGRSGTAVTLVDWDD 371

Query: 693 I 693
           I
Sbjct: 372 I 372


>gi|297459070|ref|XP_613184.4| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 1 [Bos
           taurus]
 gi|297487271|ref|XP_002696147.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 1 [Bos
           taurus]
 gi|194386232|dbj|BAG59680.1| unnamed protein product [Homo sapiens]
 gi|296476160|gb|DAA18275.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 1 [Bos taurus]
          Length = 535

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++  + ++ V TKR  ++LT  +         +H +    ER  ++ + + GK  +L+  
Sbjct: 260 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 319

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           ++   GLD+ +   V   D     +  S    I  IGR AR+  +       T   
Sbjct: 320 DVASRGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 370


>gi|172040364|ref|YP_001800078.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
 gi|171851668|emb|CAQ04644.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
          Length = 778

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 6/130 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R      ++ ++   +R   +  L+ G+ D+LV  ++   
Sbjct: 373 MIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAAR 432

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D  ++       S +  IGR  R   S   +L+     + +  +I+ 
Sbjct: 433 GLDVERITHVFNYDIPRD-----TESYVHRIGRTGRAGRSGRAVLFVTPRERRMLKSIER 487

Query: 704 TTRRREKQLE 713
            T+ R  ++E
Sbjct: 488 ATKSRLNEIE 497


>gi|311747453|ref|ZP_07721238.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
 gi|126574812|gb|EAZ79183.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
          Length = 580

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 96/284 (33%), Gaps = 38/284 (13%)

Query: 522 RPTTIVVSATPGS--WELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +  T+  SAT      +L +      E I +    L    +E      +     + +   
Sbjct: 179 KRQTVFFSATMAKPILDLTRKYQNNPEIIKVAKKELTVDRIEQVFYEVKPSLKLELMARL 238

Query: 579 AQQGLRIL--LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  L  +   TKRM ++ TE L  R I    +H ++   +R +++   R G   VL
Sbjct: 239 MNVNNYALSVVFCNTKRMTDEATEALGSRGILAEALHGDLSQAQRDKVMNKFRKGLCTVL 298

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+D+     V   D           S +  IGR  R   S   +   T  + 
Sbjct: 299 VATDVAARGIDVDNVEAVFNFD-----LPLDDESYVHRIGRTGRAGKSGKAINFVTGRRD 353

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ---- 752
               I +  R  +  +       ++P SV + I E+     ++D  T     +  Q    
Sbjct: 354 FGK-IRDLERFTKASIAK-----MDPPSVSDLI-ELKKAQFVKDVHTVISKEEDNQIFEE 406

Query: 753 -------LSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                    LS ++    L  L  QM  A   +        RD+
Sbjct: 407 TVGQLLTEGLSIEQIALGLMKL--QMGDAVKEM--------RDQ 440


>gi|28198133|ref|NP_778447.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
 gi|28056193|gb|AAO28096.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
          Length = 615

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R +    ++ +++  +R   I  L+ GK D+LV  ++   
Sbjct: 257 MIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAAR 316

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     K +   I+ 
Sbjct: 317 GLDVERISHVLNYD-----IPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIER 371


>gi|329962827|ref|ZP_08300712.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
 gi|328529384|gb|EGF56297.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
          Length = 428

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 6/121 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R+++   +K   +++T+ L +  + V  MHS+++  +R E++ + + G+ ++LV  +++
Sbjct: 245 ERVIIFASSKIKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIV 304

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAI 701
             G+DI +  LV   D             +  IGR AR  N  V + +     +S    I
Sbjct: 305 ARGIDIDDIRLVINYDV-----PHDSEDYVHRIGRTARANNDGVALTFISEKEQSNFKNI 359

Query: 702 D 702
           +
Sbjct: 360 E 360


>gi|302409340|ref|XP_003002504.1| ATP-dependent RNA helicase DBP3 [Verticillium albo-atrum VaMs.102]
 gi|261358537|gb|EEY20965.1| ATP-dependent RNA helicase DBP3 [Verticillium albo-atrum VaMs.102]
          Length = 571

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 94/255 (36%), Gaps = 32/255 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR---------LPSC 507
            P  L +++ + +   VD SH     +    R        + + GF          +P+ 
Sbjct: 302 TPGRLKDFMSDGT---VDLSHSRFAVLDEADR--------MLDKGFEDDIKAILGAMPAR 350

Query: 508 MDNRPLRF-----EEWNCLRPTTIV--VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
            D + L F          L  + +V  V  T GS   E   G +  Q           V+
Sbjct: 351 EDRQTLMFTATWPASVRLLASSFMVDPVKITIGSGGKETASGSVELQANTRITQRVEVVD 410

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
            R    ++  +  +      +  RIL+  L K+ A  +  +L +R I V  +H +++  +
Sbjct: 411 GRDKEQRLLQILRQYQAGQGRHDRILVFCLYKKEATRVEGFLQQRGIHVCGIHGDLRQDQ 470

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R   +   + G   V+V  ++   GLDIPE  LV  +      F  +    +  IGR  R
Sbjct: 471 RTRSLEAFKSGSTSVMVATDVAARGLDIPEVKLVVNV-----TFPLTIEDYVHRIGRTGR 525

Query: 681 NVNSKVILYADTITK 695
              +   +   T+  
Sbjct: 526 AGKTGEAITLFTVQD 540


>gi|229823669|ref|ZP_04449738.1| hypothetical protein GCWU000282_00970 [Catonella morbi ATCC 51271]
 gi|229786906|gb|EEP23020.1| hypothetical protein GCWU000282_00970 [Catonella morbi ATCC 51271]
          Length = 518

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 74/196 (37%), Gaps = 11/196 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT            + E     I    +    +E    + + ++ +D       
Sbjct: 177 QTLLFSATMPPEIRSLADQFLKEPAHVKIEAKQMTADLIEQFFIKCRDDEKFDIFTRLLD 236

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q   + ++   TK+  +++   L  R      +H ++   +R  +I   R G+ ++LV 
Sbjct: 237 VQMPTQAIVFCRTKKRVDEVARGLSLRGYNAELIHGDIPQQKRTSVINAFRQGQVELLVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R  N    I +      S 
Sbjct: 297 TDVAARGLDISGVTHVYNYD-----ISQDPESYVHRIGRTGRAGNEGMSITFVTPAEMSY 351

Query: 698 QLAIDETTRRREKQLE 713
              I++ TR+R + ++
Sbjct: 352 LRVIEDLTRKRMQPMK 367


>gi|188994014|ref|YP_001928266.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC
           33277]
 gi|188593694|dbj|BAG32669.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC
           33277]
          Length = 427

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++    K    +LT  L +    V  MHS+++  +R +++RD + G  DVLV  +++ 
Sbjct: 246 RTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVDVLVATDIVA 305

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
            G+DI    +V   D             +  IGR AR  N 
Sbjct: 306 RGIDIDNIRVVINYD-----IPHDPEDYVHRIGRTARGTNG 341


>gi|167763057|ref|ZP_02435184.1| hypothetical protein BACSTE_01423 [Bacteroides stercoris ATCC
           43183]
 gi|167699397|gb|EDS15976.1| hypothetical protein BACSTE_01423 [Bacteroides stercoris ATCC
           43183]
          Length = 430

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 81/200 (40%), Gaps = 28/200 (14%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           ++      TI+ SAT                 E++       E+I++   +         
Sbjct: 175 KFLPKERQTIMFSATMPAKIQQLAQNILHNPAEVKLAVSKPAEKIVQAAYIC-------- 226

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q +        A Q   R+++   +K   +++ + L +  + V  MHS+++  +R E
Sbjct: 227 YENQ-KLGIIRSLFAEQTPERVIIFASSKLKVKEVAKALKQMKLNVGEMHSDLEQAQREE 285

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++ + + G+ ++LV  +++  G+DI +  LV   D             +  IGR AR  N
Sbjct: 286 VMYEFKAGRINILVATDIVARGIDIDDIRLVINYDV-----PHDSEDYVHRIGRTARANN 340

Query: 684 SKV-ILYADTITKSIQLAID 702
             V + + +   ++   +I+
Sbjct: 341 DGVALTFVNEKEQTNFKSIE 360


>gi|146418894|ref|XP_001485412.1| hypothetical protein PGUG_03141 [Meyerozyma guilliermondii ATCC
           6260]
 gi|152013508|sp|A5DIP0|DHH1_PICGU RecName: Full=ATP-dependent RNA helicase DHH1
 gi|146390885|gb|EDK39043.1| hypothetical protein PGUG_03141 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 547

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 107/346 (30%), Gaps = 58/346 (16%)

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES-HVTIP------QISGMY 487
              + Q ++   ++L  +       TL      D ++ +DE  H+ +        ++   
Sbjct: 110 ALQTSQVVKTLGKHLKLQCMVTTGGTLL----RDDVMRLDEPVHILVGTPGRVLDLAARS 165

Query: 488 RGDFHRKATLA--EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-------------P 532
             DF         E    L         +  E+      +++ SAT              
Sbjct: 166 IADFSECPMFVMDEADKMLSREFKGIIEQILEFFPKNRQSLLFSATFPLAVKSFMDKHLN 225

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
             +E+     ++ E  +R        VE      Q     + +    +     ++   + 
Sbjct: 226 KPYEIN----LMDELTLRGISQFYAFVE----EKQKLHCLNTLFSKLKINQ-AIIFCNST 276

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
              E L + + E      Y H+++    R ++  + R G    LV  +LL  G+DI    
Sbjct: 277 NRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGSVRTLVCSDLLTRGIDIQAVN 336

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRREKQ 711
           +V   D     F ++  + +  IGR+ R  +    I +     +     I ET    E  
Sbjct: 337 VVINFD-----FPKTAETYLHRIGRSGRFGHLGLAINFIHWDDRKSLFNI-ETELGTEI- 389

Query: 712 LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
                          + I   ID  L       +I    +   L K
Sbjct: 390 ---------------KPIPSDIDRSLYVTEDEASIPRPFKIDELPK 420


>gi|114603672|ref|XP_001145017.1| PREDICTED: DEAD-box protein abstrakt isoform 2 [Pan troglodytes]
          Length = 625

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 17/186 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTG-----LVDPPVEIRSARTQVEDVYDEINLA 578
            T++ SAT         +  +V+ +    G      +D   E+   + + + VY  +   
Sbjct: 373 QTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVY-LLECL 431

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +    +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV 
Sbjct: 432 QKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVA 491

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++  +GLD P    V   D  +E       + +  IGR  R+ N+ +          I 
Sbjct: 492 TDVASKGLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGIATTF------IN 540

Query: 699 LAIDET 704
            A DE+
Sbjct: 541 KACDES 546


>gi|7211427|gb|AAF40306.1|AF156667_1 RNA helicase [Vigna radiata]
          Length = 713

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 93/268 (34%), Gaps = 39/268 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV---------EIR--------SART 566
            T++ SAT   W        I  Q ++P       V          +R         AR+
Sbjct: 316 QTLLFSATLPDW-----VKHIAAQFLKPDKKTADLVGNTKMKASTNVRHIVLPCSAPARS 370

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q   +  +I      G R ++   TK  A  L   L       R +H +++  +R   + 
Sbjct: 371 Q---LIPDIIRCYSSGGRTIIFTETKESASQLAGLLP----GARALHGDIQQAQREVTLF 423

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R GKF  LV  N+   GLDI +  L+   +     F R   S I   GR  R  N+ V
Sbjct: 424 GFRSGKFMTLVATNVAARGLDINDVQLIIQCE-----FPREVESYIHRSGRTGRAGNTGV 478

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
                   +S    I+     RE  ++        P  + + +      ++ + + +   
Sbjct: 479 AGTLYDPKRSNISKIE-----RESGVKFEHISAPRPDDIAKAVGGEAAEMITQVSDSVIP 533

Query: 747 SIDAQQLSLSKKKGKAHLKSLRKQMHLA 774
           +       L K  G   ++ L K +  A
Sbjct: 534 AFKETAEELLKSSGLTVVELLAKALAKA 561


>gi|58271014|ref|XP_572663.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|74683379|sp|Q5KBP5|DBP5_CRYNE RecName: Full=ATP-dependent RNA helicase DBP5
 gi|57228922|gb|AAW45356.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 546

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 65/193 (33%), Gaps = 13/193 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIR----SARTQVEDVYDEIN 576
             ++ SAT      E       E     +R   +    +        +  Q  +    + 
Sbjct: 324 QNVLFSATFNDDVQEFADRFAPEANKIFLRKEDITVDAIRQLYLECDSEDQKYEALSALY 383

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G  I +    K  A+ + E L      V  +H +  + ER  I+   R G+  VL
Sbjct: 384 DCLVIGQSI-VFCKRKVTADHIAERLISEGHAVASLHGDKLSQERDAILDGFRNGETKVL 442

Query: 637 VGINLLREGLDIPECGLVAILDADKEGF---LRSKTSLIQTIGRAARNVN--SKVILYAD 691
           +  N++  G+DIP   +V   D    G         + I  IGR  R       VI   D
Sbjct: 443 ITTNVIARGIDIPAVNMVVNYDVPDLGPGGNGPDIETYIHRIGRTGRFGRKGCSVIFTHD 502

Query: 692 TITKSIQLAIDET 704
             +KS    I  T
Sbjct: 503 YRSKSDVERIMNT 515


>gi|317472067|ref|ZP_07931399.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
 gi|316900471|gb|EFV22453.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 528

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 100/271 (36%), Gaps = 40/271 (14%)

Query: 524 TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT           ++ +     +V + +    +     E+R  + +VE +   +
Sbjct: 180 QTLLFSATMPKAILDITKKYQKDSKLIKVVRKELTVPNIEQYYYEVRPKQ-KVEVLCRLL 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++ + +    ++   TKRM +++T  L  R      +H ++K  +R  +++  R G+ D+
Sbjct: 239 DMHSPK--LSIVFCNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+D+ +   V   D       +     +  IGR  R   +           
Sbjct: 297 LVATDVAARGIDVDDVDAVFNYD-----LPQDDEFYVHRIGRTGRAGRTGNAFTFV---- 347

Query: 696 SIQLAIDETTRRREKQL--EHNKKHNINP------QSVKEKIMEVIDPILLEDAATTNI- 746
               A  E  + R+ Q   +   K    P       +  EK +E I  ++ E+     + 
Sbjct: 348 ----AGKEIYKLRDVQRYCKTKIKARPIPSLNDVQATRAEKSLEEITGLIEENNLDKYVD 403

Query: 747 -------SIDAQQLSLSKKKGKAHLKSLRKQ 770
                    D   L ++    K  +    +Q
Sbjct: 404 MLDEFINETDFTALEIAAAFLKKQISENEEQ 434


>gi|297161036|gb|ADI10748.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 433

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 68/198 (34%), Gaps = 17/198 (8%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D Y      A +  R+LL + TK   + LT +L    +    +HS     +R   +   +
Sbjct: 217 DRYAVTTEIAARDGRVLLFLDTKHAVDQLTRHLRASGVHAAALHSGKSQPQRTRTLAQFK 276

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+  VLV  N+   GL + +  LV  +D             +   GR AR   S  ++ 
Sbjct: 277 NGQITVLVATNVAARGLHVDDLDLVVNVDP-----PTDPKDYVHRAGRTARAGESGSVVT 331

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
                +           RRE       +  I P   K +  E     +    A +   +D
Sbjct: 332 LVLAGQ-----------RREMSRLM-AEAGIEPTITKVRSGEAELSRITGAKAPSGTPLD 379

Query: 750 AQQLSLSKKKGKAHLKSL 767
            +  +   K   A  + L
Sbjct: 380 GRPAAPRPKNTNAPFRGL 397


>gi|195394063|ref|XP_002055665.1| GJ19487 [Drosophila virilis]
 gi|194150175|gb|EDW65866.1| GJ19487 [Drosophila virilis]
          Length = 953

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 10/163 (6%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           +       + QI+      + P   +R     ++D+    N AA  G +I++ V TK   
Sbjct: 450 MNLSANHNIRQIVEICNENEKPQRMVR----LLKDIAPTTNNAANNGNKIIIFVETKIKV 505

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           ED+ + +         +H +    ER  +++D R GK ++L+  ++   GLD+ +   V 
Sbjct: 506 EDILQIIRSEGYTATSIHGDKSQSERDSVLKDFRNGKSNILIATDVASRGLDVEDLQFVI 565

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             D     +  S  + +  IGR  R           T   + Q
Sbjct: 566 NYD-----YPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQ 603


>gi|148272405|ref|YP_001221966.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830335|emb|CAN01269.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 586

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E L E L  R      +  +V   +R   +  L+ GK D+LV  ++   
Sbjct: 260 MIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDILVATDVAAR 319

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D   +       S +  IGR  R   S   I +     + +  AI++
Sbjct: 320 GLDVDRISHVVNYDIPID-----TESYVHRIGRTGRAGRSGAAISFVTPRERRLLTAIEK 374

Query: 704 TTRR 707
            TR+
Sbjct: 375 ATRQ 378


>gi|298484048|ref|ZP_07002217.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
 gi|298269829|gb|EFI11421.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
          Length = 420

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 78/193 (40%), Gaps = 28/193 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       E+II+   +            Q   
Sbjct: 182 QTIMFSATMPAKIQQLANTILNDPSEIKLAVSKPAEKIIQAAYVC--------YENQKLG 233

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   + +  +   R+++   +K   +++ + L    + V  MHS+++  +R  ++ + + 
Sbjct: 234 IIRSLFM-DEVPERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKA 292

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+ ++LV  +++  G+DI +  LV   D             +  IGR AR  N  V + +
Sbjct: 293 GRINILVATDIVARGIDIDDIRLVINFDV-----PHDSEDYVHRIGRTARANNDGVALTF 347

Query: 690 ADTITKSIQLAID 702
            +   +S   +I+
Sbjct: 348 INEKEQSNFKSIE 360


>gi|296234835|ref|XP_002762632.1| PREDICTED: ATP-dependent RNA helicase DDX3Y [Callithrix jacchus]
          Length = 656

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +   IL+ V+TK+  + L E+LY        +H +     R E +R  R GK 
Sbjct: 429 DLLGATGRDSLILVFVVTKKEVDSLEEFLYHEGYACTSIHGDRSQRAREEALRQFRSGKS 488

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 489 PILVATAVAARGLDISNVRHVINFD-----LPSDIEEYVHRIGRTGRAGNLG 535


>gi|225868917|ref|YP_002744865.1| DEAD box helicase family protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702193|emb|CAW99913.1| DEAD box helicase family protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 538

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 100/260 (38%), Gaps = 21/260 (8%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT P    E+        E + ++   L +  V+    R + ++ +D +     
Sbjct: 176 QTLLFSATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQEKFDTMTRLMD 235

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            QQ    ++   TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV 
Sbjct: 236 VQQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R   S   I +        
Sbjct: 296 TDVAARGLDISGVTHVYNYDIT-----QDPESYVHRIGRTGRAGKSGESITFVSPNEMGY 350

Query: 698 QLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
              I+  T++R K       +     K  +  + ++    +       E      + + A
Sbjct: 351 LTMIEHLTKKRMKPLKPATAEEAFQAKKKVALKKIERDFADDAIRSNFEKFKGDAMKLAA 410

Query: 751 QQLSLSKKKGKAHLKSLRKQ 770
           +    + ++   ++ SL  Q
Sbjct: 411 EF---TPEELALYILSLTVQ 427


>gi|223590197|sp|A5DKW3|DRS1_PICGU RecName: Full=ATP-dependent RNA helicase DRS1
 gi|190347530|gb|EDK39816.2| hypothetical protein PGUG_03914 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 705

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 96/265 (36%), Gaps = 32/265 (12%)

Query: 520 CLRPTTIVVSAT---PGSWELEQCQGIIVEQIIRP-----TGLVDPPVEIRSARTQVEDV 571
             +  T++ SAT        ++      V  ++ P     + LV   V IR        +
Sbjct: 375 KHKRQTMLFSATMNTKIQDLIQLSLDKPVRIMVNPPKQAASKLVQEFVRIRKREHLKPAL 434

Query: 572 YDEINLAA--QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
              +      QQ  RI++ V  K MA  L   L    ++V  +H  +   +R++ ++D R
Sbjct: 435 LYHLLRLVDPQQQNRIVVFVSRKEMAHRLRIVLGLLGMKVSELHGSLTQEQRLQSVKDFR 494

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
                VL+  +L   GLDIP+  +V   D  K     +    +  +GR AR       I 
Sbjct: 495 SLAVPVLICTDLAARGLDIPKIEIVINFDMPK-----THEIYLHRVGRTARAGREGRSIT 549

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED-AATTNIS 747
           +     +   +  D        +    +K+        + +   +D   +E+  +     
Sbjct: 550 FVGESNQDRSIVKD------AIKSLEEQKNG-------KAVSRTVDWKKVEELNSIVESK 596

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMH 772
            D     L ++K    +  L+ +M 
Sbjct: 597 KDTIDEVLEEEKSAKEI--LQAEMQ 619


>gi|163789886|ref|ZP_02184322.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
 gi|159874826|gb|EDP68894.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
          Length = 527

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 92/257 (35%), Gaps = 21/257 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT  P    +        E + I+ T + D  +E    R +  + +D +     
Sbjct: 176 QTLLFSATMPPAIKRIGVRFMKEPEHVQIKATTMSDSLIEQFFVRCKDFEKFDIMTRLFD 235

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L   L  R  R   +H ++   +R+ +++  + GK DVLV 
Sbjct: 236 VQTPELTIIFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLKAFKTGKLDVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI     V   D       +   S +  IGR  R     V +   T  +   
Sbjct: 296 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKEGVSVTFITPNEMGY 350

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
           L + E             K  + P        E  +  +          +DA  L   +K
Sbjct: 351 LRVIEDL----------TKKAMTPLRPPTN-AEAFEGQIKASIDEVGSIVDANGLDRYEK 399

Query: 759 KGKAHLKSLRKQMHLAA 775
                L++   +   AA
Sbjct: 400 AAAQLLETYTAEDLAAA 416


>gi|134057429|emb|CAK47767.1| unnamed protein product [Aspergillus niger]
          Length = 587

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V +K  A+ L +YLY   +    +HS+    ER + +R  R  K  +LV   +  
Sbjct: 398 RTLIFVNSKTQADFLDDYLYNMGLPSTSIHSDRTQREREDALRAFRTAKCPILVATGVSA 457

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            GLDI     V   D  +       T  +  IGR AR  N  +            LA D
Sbjct: 458 RGLDIKNVMHVVNFDLPR-VQHGGITEYVHRIGRTARIGNEGLATSFYNHDNDADLAPD 515


>gi|121704610|ref|XP_001270568.1| ATP dependent RNA helicase (Dhh1), putative [Aspergillus clavatus
           NRRL 1]
 gi|142981101|sp|A1CJ18|DHH1_ASPCL RecName: Full=ATP-dependent RNA helicase dhh1
 gi|119398714|gb|EAW09142.1| ATP dependent RNA helicase (Dhh1), putative [Aspergillus clavatus
           NRRL 1]
          Length = 503

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 75/226 (33%), Gaps = 35/226 (15%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 215 SFHPKDRQVMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVH- 273

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 274 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNR 325

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 326 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 380

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +          L   E     E Q          PQ++ +K+
Sbjct: 381 LGLAINLINWEDRFNLYKIEQELGTEIQ--------PIPQNIDKKL 418


>gi|116203955|ref|XP_001227788.1| hypothetical protein CHGG_09861 [Chaetomium globosum CBS 148.51]
 gi|118582180|sp|Q2GQ93|DHH1_CHAGB RecName: Full=ATP-dependent RNA helicase DHH1
 gi|88175989|gb|EAQ83457.1| hypothetical protein CHGG_09861 [Chaetomium globosum CBS 148.51]
          Length = 512

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 75/227 (33%), Gaps = 37/227 (16%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT                +E+     + +  I +    V+   ++  
Sbjct: 179 RFHPKDRQVMLFSATFPISVKDFSDKNMTSPYEINLMDELTLRGITQYYAYVEEKQKVH- 237

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+++    R  
Sbjct: 238 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNR 289

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 290 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRYGH 344

Query: 684 SK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
               I   +   +     I+      E Q          PQ++ + +
Sbjct: 345 LGLAINLINWDDRFNLYNIERDL-GTEIQ--------PIPQTIDKSL 382


>gi|319442814|ref|ZP_07991970.1| putative ATP-dependent RNA helicase [Corynebacterium variabile DSM
           44702]
          Length = 456

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           V   I     +G R ++   TKR A  + E L     RV  +H +++  +R   +   R 
Sbjct: 254 VLARILQTPGRG-RTIVFARTKRSAAMVAEDLAGLGFRVGAVHGDMRQNDRERSLDAFRD 312

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G  D++V  ++   G+D+ +   V               + +  IGR  R  +S V +  
Sbjct: 313 GSVDIMVATDVAARGIDVEDVTHVINYQV-----PEDDKTYVHRIGRTGRAGHSGVAVTL 367

Query: 690 ADTITKSIQLAIDET 704
            D    +   AID+T
Sbjct: 368 VDWDDLTRWQAIDDT 382


>gi|198470572|ref|XP_001355346.2| GA10556 [Drosophila pseudoobscura pseudoobscura]
 gi|198145515|gb|EAL32403.2| GA10556 [Drosophila pseudoobscura pseudoobscura]
          Length = 939

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 23/169 (13%)

Query: 537 LEQCQGIIVEQII-------RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
           +       + QI+       +P  +V    EI                +A  G +I++ V
Sbjct: 451 MNLSANHNIRQIVEICTEMEKPQRMVRLLKEIAPTNN-----------SANNGNKIIIFV 499

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            TK   ED+ + +         +H +    ER  +++D R GK ++L+  ++   GLD+ 
Sbjct: 500 ETKIKVEDILQIIRTEGYIATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVE 559

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           +   V   D     +  S  + +  IGR  R           T   + Q
Sbjct: 560 DLQYVINYD-----YPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQ 603


>gi|170782231|ref|YP_001710564.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156800|emb|CAQ01964.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 585

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E L E L  R      +  +V   +R   +  L+ GK D+LV  ++   
Sbjct: 259 MIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDILVATDVAAR 318

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D   +       S +  IGR  R   S   I +     + +  AI++
Sbjct: 319 GLDVDRISHVVNYDIPID-----TESYVHRIGRTGRAGRSGAAISFVTPRERRLLTAIEK 373

Query: 704 TTRR 707
            TR+
Sbjct: 374 ATRQ 377


>gi|170593039|ref|XP_001901272.1| DEAD [Brugia malayi]
 gi|158591339|gb|EDP29952.1| DEAD, putative [Brugia malayi]
          Length = 689

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 73/194 (37%), Gaps = 18/194 (9%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            + + GF      +     F  +   R  T++ SAT         +  +V  +I   G  
Sbjct: 415 RMLDMGFE-----EEIRTIFSFFKGQR-QTLLFSATMPRKIQNFARSALVRAVIVNVGRA 468

Query: 555 ------VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
                 V   +E   A  ++  + D +   A    R+L+    K   +++ EYL  + + 
Sbjct: 469 GAASLNVIQEIEYVRADEKLTRILDCLQKTAP---RVLIFAEKKSDVDNIYEYLLVKGVD 525

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H      +R   +   R G+ DVLV  ++  +GLD      V   D  ++  + + 
Sbjct: 526 VASLHGGKDQKDRHTGVDAFRRGEKDVLVATDVASKGLDFENIQHVINFDMPED--IENY 583

Query: 669 TSLIQTIGRAARNV 682
              I   GR+ R  
Sbjct: 584 VHRIGRTGRSGRKG 597


>gi|160884579|ref|ZP_02065582.1| hypothetical protein BACOVA_02566 [Bacteroides ovatus ATCC 8483]
 gi|237718558|ref|ZP_04549039.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|260174903|ref|ZP_05761315.1| ATP-dependent RNA helicase [Bacteroides sp. D2]
 gi|299145716|ref|ZP_07038784.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
 gi|315923146|ref|ZP_07919386.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156110318|gb|EDO12063.1| hypothetical protein BACOVA_02566 [Bacteroides ovatus ATCC 8483]
 gi|229452018|gb|EEO57809.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|298516207|gb|EFI40088.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
 gi|313697021|gb|EFS33856.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 422

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 77/193 (39%), Gaps = 28/193 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       E+II+   +            Q   
Sbjct: 182 QTIMFSATMPAKIQQLANTILNNPSEIKLAVSKPAEKIIQAAYVC--------YENQKLG 233

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   + +  +   R+++   +K   +++ + L    + V  MHS+++  +R  ++ + + 
Sbjct: 234 IIRSLFM-DEVPERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKA 292

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+ ++LV  +++  G+DI +  LV   D             +  IGR AR  N  V + +
Sbjct: 293 GRINILVATDIVARGIDIDDIRLVINFDV-----PHDSEDYVHRIGRTARANNDGVALTF 347

Query: 690 ADTITKSIQLAID 702
                +S   +I+
Sbjct: 348 ISEKEQSNFKSIE 360


>gi|51556985|gb|AAU06262.1| DEAD box DNA helicase [Plasmodium falciparum]
          Length = 516

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 8/142 (5%)

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL---RILLTVLTKRMAEDLTEYLY 603
           QI +     +  +E     +   D+  ++    ++     +IL+   TKR  ++L + L 
Sbjct: 336 QIGKNELTANKNIEQNVIISSSIDMKKKLLDWLKENYENNKILIFCDTKRNCDNLGKELR 395

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                   +H + +  ER  I+ + +  + ++LV  ++   GLDI    +V   D     
Sbjct: 396 YHQYNALSIHGDKQQRERDRILNNYKTDRCNILVATDVASRGLDIKNISVVINYD----- 450

Query: 664 FLRSKTSLIQTIGRAARNVNSK 685
              +    I  IGR  R     
Sbjct: 451 IPNTIEDYIHRIGRTGRAGKKG 472


>gi|318079420|ref|ZP_07986752.1| putative ATP-dependent RNA helicase [Streptomyces sp. SA3_actF]
          Length = 461

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 12/181 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------EDVY 572
           +  T++ SAT PG+      + +     I  T   D    + +    V         ++ 
Sbjct: 147 KRQTMLFSATMPGAVVALARRYMSQPTHINATSPDDENATVANTEQHVFRAHSMDKPEMV 206

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +GL +++   TKR A D++E L  R      +H ++    R + +R  R GK
Sbjct: 207 ARILQAEGRGL-VMIFCRTKRTAADISEQLQRRGFAAGAVHGDLGQGAREQALRAFRNGK 265

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            DVLV  ++   G+D+     V      ++   ++    I   GRA R+  +  ++  D 
Sbjct: 266 VDVLVCTDVAARGIDVEGVTHVINYQTPEDE--KTYLHRIGRTGRAGRSGTAVTLVDWDD 323

Query: 693 I 693
           I
Sbjct: 324 I 324


>gi|254168903|ref|ZP_04875743.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|197622167|gb|EDY34742.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
          Length = 451

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 86/235 (36%), Gaps = 18/235 (7%)

Query: 523 PTTIVVSAT--PGSWELEQCQGIIVEQII------RPTGLVDPPVEIRSARTQVEDVYDE 574
              ++ SAT  P    L +      E+II          +    VE+     ++  +   
Sbjct: 174 KQMMLFSATMPPEIISLARRYMKNPEKIILSEDEITAENVAQYYVEV----GEINKIAKL 229

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            +L   +  + L+   T+R  +++ E L +   +   +H +++   R   +   + GK D
Sbjct: 230 SSLLISERGKYLIFCNTRRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKID 289

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTI 693
           +LV  ++   G+D+     V   D             +  IGR  R + + K I +    
Sbjct: 290 ILVSTDVAARGIDVHGITHVVNYDVPLY-----PKDYVHRIGRTGRMDAHGKAITFVTRE 344

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
            K     I++   +R  ++E      I  +   ++I ++   +         +S 
Sbjct: 345 DKEYFRRIEDFIGKRIPKMEIKNVGKIKERIDYKEISDIFGMVKFNFELKNELSE 399


>gi|212275354|ref|NP_001130628.1| hypothetical protein LOC100191727 [Zea mays]
 gi|194689682|gb|ACF78925.1| unknown [Zea mays]
          Length = 614

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 19/177 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYD 573
              T++ SAT    E+++     +   I          T L+D  +E  +   +   + D
Sbjct: 275 VRQTMLFSAT-FPPEIQRLATDFLHNYIFVTVGRVGSSTDLIDQKIEFVNGGEKRGFLLD 333

Query: 574 EINLA-----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            +          +    L+ V TKR A+ L   L         +H +    ER   ++  
Sbjct: 334 ILQKQSVGLSKNKQPLTLVFVETKREADSLQYCLQSNGFSATSIHGDRTQQERERALKSF 393

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           + G   +LV  ++   GLD+P    V   D  K     S    +  IGR  R   + 
Sbjct: 394 KSGATPILVATDVASRGLDVPNVAHVINYDLPK-----SIDDYVHRIGRTGRAGKAG 445


>gi|57111967|ref|XP_548903.1| PREDICTED: similar to ATP-dependent RNA helicase ROK1 isoform a
           [Canis familiaris]
          Length = 598

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H++    +R   +   R GK
Sbjct: 402 MRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGK 461

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  +  K + +  
Sbjct: 462 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGHKGKAVTFFT 516

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 517 EDDKPLLRSV 526


>gi|90961336|ref|YP_535252.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
 gi|90820530|gb|ABD99169.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
          Length = 492

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 77/191 (40%), Gaps = 11/191 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QI--IRPTGLVDPPVEIRSARTQVEDVYDEINLAA- 579
            T++ SAT     L+  +  +V  QI  I+   L    V+    +T+  + +D +     
Sbjct: 177 QTLLFSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRLID 236

Query: 580 -QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L+  L  R      +H ++    R+ ++R  + G  D+LV 
Sbjct: 237 VQAPELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R  +    + +        
Sbjct: 297 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDY 351

Query: 698 QLAIDETTRRR 708
              I++ T++R
Sbjct: 352 LRVIEKLTKKR 362


>gi|71276350|ref|ZP_00652627.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Dixon]
 gi|71901364|ref|ZP_00683458.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|170729445|ref|YP_001774878.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
 gi|71162812|gb|EAO12537.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Dixon]
 gi|71728863|gb|EAO31000.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|167964238|gb|ACA11248.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
          Length = 609

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R +    ++ +++  +R   I  L+ GK D+LV  ++   
Sbjct: 251 MIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     K +   I+ 
Sbjct: 311 GLDVERISHVLNYD-----IPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIER 365


>gi|302789710|ref|XP_002976623.1| hypothetical protein SELMODRAFT_151274 [Selaginella moellendorffii]
 gi|300155661|gb|EFJ22292.1| hypothetical protein SELMODRAFT_151274 [Selaginella moellendorffii]
          Length = 595

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 10/131 (7%)

Query: 571 VYDEINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           + D I+     G       +L+ V TKR A+ L ++L         +H +    ER + +
Sbjct: 390 LMDIIHGQKAIGANGQPPLMLVFVETKRGADALEDWLIRSGFPATTIHGDRTQPEREQAL 449

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           R  R G   +LV  ++   GLDIP    V   D             +  IGR  R  NS 
Sbjct: 450 RCFRTGMTPILVATDVAARGLDIPHVAHVINYD-----LPSDIDDYVHRIGRTGRAGNSG 504

Query: 686 VILYADTITKS 696
           +     T   S
Sbjct: 505 LATAFFTDKDS 515


>gi|160380699|sp|A7EYW0|DBP3_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp3
          Length = 596

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 72/191 (37%), Gaps = 19/191 (9%)

Query: 522 RPTTIVVSAT--PGSWELEQCQGIIVEQI---------IRPTGLVDPPVEI---RSARTQ 567
           +  T++ +AT      EL         +I         +R    +   VE+   R    +
Sbjct: 358 KRQTLMFTATWPESVRELASTFMTSPVKIAIGDNPTGDLRANSRIVQKVEVVEPRDKEYR 417

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +  +  +    +Q+  RIL+  L K+ A  +  ++ ++  RV  +H ++   +R   +  
Sbjct: 418 LMQLLKQYQSGSQKDDRILVFCLYKKEATRVEGFIRQKGFRVAGIHGDLSQEQRTRSLEA 477

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + G   VLV  ++   GLDIP   LV         F  +    +  IGR  R     + 
Sbjct: 478 FKSGNTPVLVATDVAARGLDIPAVKLVINC-----TFPLTVEDYVHRIGRTGRAGKDGLA 532

Query: 688 LYADTITKSIQ 698
           +   T     Q
Sbjct: 533 ITLFTEHDKAQ 543


>gi|41282082|ref|NP_571016.2| pl10 [Danio rerio]
 gi|37590512|gb|AAH59794.1| Pl10 [Danio rerio]
          Length = 688

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 17/189 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT    E++      +E  I          +  +   V       +   + D +
Sbjct: 409 QTMMFSAT-FPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLL 467

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R G+  +
Sbjct: 468 NATGKDSL-TLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPI 526

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI--LYADTI 693
           LV   +   GLDI     V   D             +  IGR  R  N  +    + D  
Sbjct: 527 LVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLGLATSFFNDKN 581

Query: 694 TKSIQLAID 702
               +  +D
Sbjct: 582 GNITKDLLD 590


>gi|2558533|emb|CAA73349.1| putative RNA helicase (DEAD box) [Danio rerio]
          Length = 688

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 17/189 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT    E++      +E  I          +  +   V       +   + D +
Sbjct: 409 QTMMFSAT-FPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLL 467

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R G+  +
Sbjct: 468 NATGKDSL-TLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPI 526

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI--LYADTI 693
           LV   +   GLDI     V   D             +  IGR  R  N  +    + D  
Sbjct: 527 LVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLGLATSFFNDKN 581

Query: 694 TKSIQLAID 702
               +  +D
Sbjct: 582 GNITKDLLD 590


>gi|66825125|ref|XP_645917.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|1688326|gb|AAB36962.1| IfdA [Dictyostelium discoideum]
 gi|60473986|gb|EAL71923.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 395

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 87/235 (37%), Gaps = 25/235 (10%)

Query: 484 SGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI 543
            G+   D  R   L E    L     ++      +        + SAT     L      
Sbjct: 159 RGIINRDTIRIFCLDEADEMLSRGFKDQIYEIFRFLPKTIQVGLFSATMTDETLGITSKF 218

Query: 544 IVEQI--------IRPTGLVDPPVEIRSARTQVE---DVYDEINLAAQQGLRILLTVLTK 592
           +   +        +   G+    V +   + + E   D+Y+ +++      + ++   T+
Sbjct: 219 MQNPVSILVKKDELTLEGIRQFYVNVGVEQGKFEVLTDLYETLSIT-----QSVIFCNTR 273

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  + LT  + E+   V   H +    +R  I++  R G   VL+  +LL  G+D+ +  
Sbjct: 274 RKVDWLTSKMTEQKFTVSSTHGD--QKDRDGILQAFRSGATRVLITTDLLARGIDVQQVS 331

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
           LV   D        +  + I  IGR+ R     V +    IT + +  IDE +R 
Sbjct: 332 LVINFD-----LPTNIENYIHRIGRSGRFGRKGVAINF--ITDAERGQIDELSRH 379


>gi|319651117|ref|ZP_08005250.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317397171|gb|EFV77876.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 463

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 89/256 (34%), Gaps = 16/256 (6%)

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           ++   P  I   A     E E  +    E  ++        V       Q  DV   +  
Sbjct: 161 FSATMPKRIQSLAEKFMQEPEMVKVKAKEMTVKNIEQYYMEVH----EKQKFDVLCNLLD 216

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TK+  +++ E L +R      +H ++   +R ++IR  +    D++V
Sbjct: 217 -IQSPELAIVFGRTKKRVDEVVEGLIKRGYSAEGIHGDIPQAKRDQVIRRFKEQTIDIMV 275

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R  N    I +       
Sbjct: 276 ATDVAARGLDISGVSHVYNFD-----IPQDPESYVHRIGRTGRAGNKGLAITFVSPREID 330

Query: 697 IQLAIDETTRRREKQL---EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
               I+  T+ +  +            N Q+   K+MEVI+     D      S+     
Sbjct: 331 HLKIIESVTKSKMAKKPVPSFKDVVAGNQQATINKLMEVIEKEEHADFKRVAESLLEDTD 390

Query: 754 SLSKKKGKAHLKSLRK 769
           S++     A +K L K
Sbjct: 391 SVTL--LAAAIKLLTK 404


>gi|225025644|ref|ZP_03714836.1| hypothetical protein EIKCOROL_02546 [Eikenella corrodens ATCC
           23834]
 gi|224941594|gb|EEG22803.1| hypothetical protein EIKCOROL_02546 [Eikenella corrodens ATCC
           23834]
          Length = 466

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 13/190 (6%)

Query: 521 LRPTTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSART---QVEDVYDE 574
            +  T++ SAT  P   +L Q      EQ+   P       VE         Q  ++ + 
Sbjct: 183 KQRQTLLFSATFSPPIRKLAQDFMNRPEQVQTAPQNTASASVEQHIIAIDTAQKRNLLER 242

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           + +       +++   TK+  + +   L  R + V  +H +     R+E +   + G+  
Sbjct: 243 LIVDLHINQ-VIVFCKTKQSVDQVARDLKRRGLSVAPIHGDKSQQTRLETLNAFKAGELR 301

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           VLV  ++   GLDI E   V   +             +  IGR  R     V I   D  
Sbjct: 302 VLVATDVAARGLDIAELPFVINYE-----MPTQAEDYVHRIGRTGRAGAEGVAISLMDED 356

Query: 694 TKSIQLAIDE 703
            + +  AI E
Sbjct: 357 EQKMFEAIKE 366


>gi|1170508|sp|P41381|IF4A8_TOBAC RecName: Full=Eukaryotic initiation factor 4A-8; Short=eIF-4A-8;
           AltName: Full=ATP-dependent RNA helicase eIF4A-8
 gi|475219|emb|CAA55639.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
 gi|475221|emb|CAA55640.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
          Length = 413

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 6/117 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+R  + LT+ +  R+  V   H ++    R  I+R+ R G   VL+  +LL  G
Sbjct: 283 VIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 342

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAI 701
           +D+ +  LV   D           + +  IGR+ R     V I +  T  + +   I
Sbjct: 343 IDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDI 394


>gi|326491859|dbj|BAJ98154.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 786

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 12/159 (7%)

Query: 542 GIIVEQIIRPT--GLVDPPVEI---RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           G+  EQ   PT    V   VE+   R    +++D+  +++    +  RIL+  L K+ AE
Sbjct: 578 GVKQEQSDGPTANRRVTQIVEVMTYRDKEHRLQDLLHKLH--KSRKNRILVFALYKKEAE 635

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            + + L  +  +V+ +H +     R + I   R G+  +LV  ++   GLDIP+   V  
Sbjct: 636 RIEQTLRRKGWKVQGIHGDKSQALRSKAIESFRSGEEPLLVATDVAARGLDIPDVEYVIN 695

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
                  F  +    +  IGR  R   +       T   
Sbjct: 696 Y-----TFPLTIEDYVHRIGRTGRAGKTGTAYTFFTDED 729


>gi|327302680|ref|XP_003236032.1| ATP-dependent RNA helicase DBP2 [Trichophyton rubrum CBS 118892]
 gi|326461374|gb|EGD86827.1| ATP-dependent RNA helicase DBP2 [Trichophyton rubrum CBS 118892]
          Length = 538

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 82/209 (39%), Gaps = 21/209 (10%)

Query: 524 TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T + SAT           +  +  Q  I  Q +     +   VE+ S   + + +   +
Sbjct: 302 QTCMWSATWPKDVRQLANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIKHL 361

Query: 576 NLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               + +  ++L+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  
Sbjct: 362 ERIMEDKKSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSP 421

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           ++V  ++   G+D+ +   V   D     +  +    +  IGR  R   +   +   T  
Sbjct: 422 IMVATDVASRGIDVRDITHVLNHD-----YPNNSEDYVHRIGRTGRAGANGTAITLFTTE 476

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            + Q        R   ++    K  I+P+
Sbjct: 477 NAKQA-------RDLVKILTESKQQIDPR 498


>gi|325119659|emb|CBZ55212.1| Eukaryotic initiation factor, related [Neospora caninum Liverpool]
          Length = 487

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 71/208 (34%), Gaps = 27/208 (12%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           ++       ++ SAT             P + E+     + ++ + +    V+   ++  
Sbjct: 282 KFVPRERQILMYSATFPVTVKDFKNKYLPDAHEINLMDELTLKGLTQYYAFVEERQKVH- 340

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q     ++   +    E L + + E      Y+H+ +    R  
Sbjct: 341 -------CLNTLFSKLQINQ-AIIFCNSVTRVELLAKKITELGYSCFYIHARMMQSHRNR 392

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +L   G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 393 VFHDFRNGACRCLVSSDLFTRGIDIQSVNVVINFD-----FPKNSETYLHRIGRSGRFGH 447

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQ 711
             + +   T      L   E+    E Q
Sbjct: 448 LGLAINLITYDDRFNLYRIESELGTEIQ 475


>gi|293373074|ref|ZP_06619442.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f]
 gi|292631960|gb|EFF50570.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f]
          Length = 422

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 77/193 (39%), Gaps = 28/193 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            TI+ SAT                 E++       E+II+   +            Q   
Sbjct: 182 QTIMFSATMPAKIQQLANTILNNPSEIKPAVSKPAEKIIQAAYVC--------YENQKLG 233

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   + +  +   R+++   +K   +++ + L    + V  MHS+++  +R  ++ + + 
Sbjct: 234 IIRSLFM-DEVPERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKA 292

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G+ ++LV  +++  G+DI +  LV   D             +  IGR AR  N  V + +
Sbjct: 293 GRINILVATDIVARGIDIDDIRLVINFDV-----PHDSEDYVHRIGRTARANNDGVALTF 347

Query: 690 ADTITKSIQLAID 702
                +S   +I+
Sbjct: 348 ISEKEQSNFKSIE 360


>gi|188532351|ref|YP_001906148.1| ATP-dependent RNA helicase RhlB [Erwinia tasmaniensis Et1/99]
 gi|226739538|sp|B2VG58|RHLB_ERWT9 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|188027393|emb|CAO95240.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 430

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 89/258 (34%), Gaps = 44/258 (17%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNR 511
           L +Y          ++HV +  I  +   +  R   L   GF         R+P+     
Sbjct: 145 LIDY--------AKQNHVNLGAIQVVVLDEADRMFDL---GFIKDIRWLFRRMPAANQRL 193

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELE-----QCQGIIVEQIIRPTGLVDPPVEIRSART 566
            + F      R   +       +  +E     +    I E++  P+       ++R  +T
Sbjct: 194 NMLFSATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELFYPSNEE----KMRLLQT 249

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            +E+         +   R ++   TK   ED+  +L     RV  +  +V   +R+ I+ 
Sbjct: 250 LIEE---------EWPDRTIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILD 300

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSK 685
           D   G  D+LV  ++   GL IP    V   D         +   +  IGR  R   N  
Sbjct: 301 DFTKGDVDILVATDVAARGLHIPAVTHVFNYD-----LPDDREDYVHRIGRTGRAGANGH 355

Query: 686 VILYADTITKSIQLAIDE 703
            I  A         AI+E
Sbjct: 356 SISLACEEYALNLPAIEE 373


>gi|50954992|ref|YP_062280.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951474|gb|AAT89175.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 589

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 8/148 (5%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           + S   +V+ +   +    +    +++ V TK   E L E L  R      +  +V   +
Sbjct: 237 VVSYSQKVDALTRILE--VENFEAMIVFVRTKNETETLAERLRARGYSAAAISGDVAQAQ 294

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R   +  L+ GK D+LV  ++   GLD+     V   D   +       S +  IGR  R
Sbjct: 295 RERTVGQLKSGKLDILVATDVAARGLDVDRISHVVNFDIPVD-----TESYVHRIGRTGR 349

Query: 681 NVNSK-VILYADTITKSIQLAIDETTRR 707
              S   I +  T  + +  AI++ TR+
Sbjct: 350 AGRSGAAISFVTTRERRLLTAIEKATRQ 377


>gi|76664712|emb|CAJ17795.1| superfamily II DNA and RNA helicase [Candidatus Phytoplasma solani]
          Length = 125

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 5/118 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++    +L   TK+  +++T YL ++      +H ++K  +R  ++ + R GK  +L+  
Sbjct: 13  EKDHSAILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIQILIAT 72

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           ++   G+DI +  +V   D   E         +  IGR  R     +     +  K  
Sbjct: 73  DVAARGIDISDIKMVINYDLPHE-----DEVYVHRIGRTGRAGKKGLAYSLISPRKMS 125


>gi|282863822|ref|ZP_06272880.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282561523|gb|EFB67067.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 496

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 70/195 (35%), Gaps = 18/195 (9%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-----QGIIVEQIIR 550
            +A+ GF LP   +   L   +        ++ SAT    E++Q         +V  +  
Sbjct: 210 QMADLGF-LPQVTELLDLVRPD-----GQRMLFSAT-LDREVDQLVRRYLHDPVVHSVDP 262

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
             G V    E      Q  D Y      A +  R+++ + TK   + LT +L    +R  
Sbjct: 263 AAGTVTTM-EHHVLHVQGADKYATTTEIAARDGRVIMFLDTKHAVDRLTAHLRGSGVRAA 321

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      +R   +   R G   VLV  N+   G+ + +  LV  +D            
Sbjct: 322 ALHGGKSQPQRTRTLDRFRTGDLTVLVATNVAARGIHVDDLDLVVNVDP-----PTDPKD 376

Query: 671 LIQTIGRAARNVNSK 685
            +   GR AR   S 
Sbjct: 377 YLHRAGRTARAGESG 391


>gi|219119587|ref|XP_002180550.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408023|gb|EEC47958.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 552

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 77/195 (39%), Gaps = 19/195 (9%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P + +      +     + V ++   +  V   VE    R +V+ +   + 
Sbjct: 312 QTMMFSATFPANIQRLASDFMRDYVFLTVGRVGSASKDVTQTVEFVEERDKVDALMKFLL 371

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              Q GL IL+ V TKR  + + + L  +      +H +    ER + +R  + G   +L
Sbjct: 372 -TIQDGL-ILIFVETKRSCDYVEDVLCGQGFPACSIHGDKSQREREDALRYFKNGNTPIL 429

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
              ++   GLDIP    V   D        +    +  IGR  R  N+   L     + S
Sbjct: 430 CATSVAARGLDIPNVTQVVNYD-----LPSNIDDYVHRIGRTGRAGNTGAALSFINESNS 484

Query: 697 -----IQLAIDETTR 706
                ++  +DE  +
Sbjct: 485 GVVRELRDLLDENEQ 499


>gi|219113631|ref|XP_002186399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583249|gb|ACI65869.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 414

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 71/175 (40%), Gaps = 15/175 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
              + SAT     LE  +  + E +        +   G+    + +     ++E + D  
Sbjct: 216 QVCLFSATMPLDVLEVTERFMREPVRILVKKDELTLEGIKQFYISVDKEDWKLETLCDLY 275

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   + ++   T+R  + L E + +R+  V  MH ++   ER  I+R+ R G   V
Sbjct: 276 ETLTIT--QAIIYCNTRRKVDWLQEEMQKRDFTVSCMHGDMDQRERDIIMREFRSGSSRV 333

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           L+  +LL  G+D+ +  LV   D        ++ + I  IGR+ R     V +  
Sbjct: 334 LITTDLLARGIDVQQVSLVINFD-----LPTNRENYIHRIGRSGRFGRKGVAINF 383


>gi|171778647|ref|ZP_02919743.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282604|gb|EDT48028.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 533

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 77/200 (38%), Gaps = 16/200 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD +    D+LV 
Sbjct: 236 VDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNDNLDILVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +   
Sbjct: 296 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGY 350

Query: 699 LAIDET-TRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
           LAI E  T++R K       +     K  +  + ++    +      +E      + +  
Sbjct: 351 LAIIENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADETIRANIEKFKGDAVKLAQ 410

Query: 751 QQLSLSKKKGKAHLKSLRKQ 770
           +    + ++   ++ +L  Q
Sbjct: 411 EF---TPEELALYILTLTVQ 427


>gi|38564733|gb|AAR23806.1| initiation factor eIF4A-15 [Helianthus annuus]
          Length = 413

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 77/192 (40%), Gaps = 17/192 (8%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KVILYADTITKS 696
            V +   T+   
Sbjct: 377 GVAINFVTLDDE 388


>gi|294012034|ref|YP_003545494.1| putative helicase [Sphingobium japonicum UT26S]
 gi|292675364|dbj|BAI96882.1| putative helicase [Sphingobium japonicum UT26S]
          Length = 461

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 77/217 (35%), Gaps = 17/217 (7%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGSWELEQCQG--IIVEQIIRPT 552
            + + GF  P     + L  E         +  SAT PG  E    Q     V+  + P 
Sbjct: 159 QMMDMGFIHPLKRIAKLLPKER------QNLFFSATMPGEIEALASQFLHDPVKVSVAPQ 212

Query: 553 GLVDPPVEIRSAR-TQVE-DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
                 V  ++    Q+E      + + ++   R L+   TK  A+ +  +L    I+  
Sbjct: 213 STTAERVRQQATFVNQMEKQALLNLTIRSEDIDRALIFTRTKHGADRVVRFLEGAGIQAV 272

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      +R   ++  R G   +LV  ++   G+D+     V   +            
Sbjct: 273 AIHGNKSQAQRTTALQAFRHGHVKLLVATDIAARGIDVSGVSHVINFE-----LPNVPEQ 327

Query: 671 LIQTIGRAARNVNSKV-ILYADTITKSIQLAIDETTR 706
            +  IGR AR     V I +     +    AI+ TT+
Sbjct: 328 YVHRIGRTARAGAEGVAISFVADDERPYLKAIERTTK 364


>gi|328952772|ref|YP_004370106.1| DEAD/DEAH box helicase domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328453096|gb|AEB08925.1| DEAD/DEAH box helicase domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 415

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 66/190 (34%), Gaps = 10/190 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI----RSARTQVEDVYDEINLAA 579
            T++ SAT     L     ++   +      + P + +       +  ++       L  
Sbjct: 177 QTLLFSATMPDDILHLAHEVLKAPVTVQVNNIGPAINVSHRLYPIKQHLKTALLLELLRH 236

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
                +L+   TK  A+ L E L +   R   +   +    R  ++   R G F +LV  
Sbjct: 237 TNTESVLIFTRTKHRAKRLGEQLGKAGYRATSLQGNLSQGRRQAVMNGFRNGTFQILVAT 296

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQ 698
           ++   G+D+ +   V   D        +  +    IGR  RN  +     +  +  + + 
Sbjct: 297 DIAARGIDVTQISHVINYD-----MPDTIDAYTHRIGRTGRNTKTGDAFTFITSEDEDMV 351

Query: 699 LAIDETTRRR 708
             I+   R R
Sbjct: 352 RRIENVLRTR 361


>gi|309792203|ref|ZP_07686675.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
 gi|308225744|gb|EFO79500.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
          Length = 523

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 66/170 (38%), Gaps = 9/170 (5%)

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
            I  EQ+  P        E+     +++ +   ++   +     ++   T+  A+ L E 
Sbjct: 203 SIAAEQLATPRTRQTY-YEVMPRE-KLDALCRILD--VETPSSAIIFCRTRSEADALGES 258

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L  R      +H ++   +R  +++  R G+ ++LV  ++   GLDIP+   V   D   
Sbjct: 259 LQGRGYLSEVLHGDMSQAQRDRVMKRFREGQAELLVATDVAARGLDIPDVTHVINYDV-- 316

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
                   + +  IGR  R   + + +   T  +   L I E   R   Q
Sbjct: 317 ---PNDPEAYVHRIGRTGRAGRTGLAITLITPRERRMLQIIERASRSRIQ 363


>gi|283049400|gb|ADB07168.1| DEAD-box RNA helicase-like protein [Prunus persica]
 gi|283049402|gb|ADB07169.1| DEAD-box RNA helicase-like protein [Prunus persica]
          Length = 413

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 377 GVAINFVTRDDERMLYDIQR 396


>gi|240280856|gb|EER44360.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Ajellomyces
           capsulatus H143]
          Length = 1200

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 85/242 (35%), Gaps = 28/242 (11%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P + E    +     VE I+    +V P +    E+R+  T+   +   + 
Sbjct: 747 QTVLFSATFPRNMEALARKTLAKPVEIIVGGKSVVAPEITQIVEVRNQDTKFVRLLALLG 806

Query: 577 LA----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                   +  R L+ V  +  A+ L   L  +      +H     ++R   I D + G 
Sbjct: 807 ELYADDKNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKAGV 866

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F +L+  ++   GLD+ +  LV   DA            +   GR  R  N+   +    
Sbjct: 867 FPILIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRAGRTGRAGNTGTAVTF-- 919

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                   + E   R    +    K      P+ V++ +   ++ +       +      
Sbjct: 920 --------LTEDQERYSVDISKALKQSGQPVPEPVQKLVNSFMEKVKAGKEKASGSGFGG 971

Query: 751 QQ 752
           Q+
Sbjct: 972 QR 973


>gi|269122841|ref|YP_003305418.1| DEAD/DEAH box helicase domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268314167|gb|ACZ00541.1| DEAD/DEAH box helicase domain protein [Streptobacillus moniliformis
           DSM 12112]
          Length = 900

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 82/454 (18%), Positives = 151/454 (33%), Gaps = 101/454 (22%)

Query: 294 IVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMF 353
             + K+ +   + E+L  LV+  YK++   + +G F + GD I+I+PS+L++   R+  F
Sbjct: 100 SKEFKVNEEYSRDEILKYLVENGYKKEYTVLNKGEFAIRGDIIDIYPSNLDN-PIRLDFF 158

Query: 354 GNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRP----------------------- 390
              +E I  F     + I N+E I ++ N      R                        
Sbjct: 159 DTILENIKIFSTYDQRSIENIEEITVFGNVLSGMEREIVDMISIFSKGNIEIFLENKEFL 218

Query: 391 --TLNTAMKYIKEE---LKMRLIELEKEGRLLEAQR------------------------ 421
              L   + + K+    LK R  +L ++G LLE  R                        
Sbjct: 219 EVKLEQMLMFDKDNEKVLKERFNKLIEKGNLLEVSRSKDRNYQDEIKSKRERIEKKGIKY 278

Query: 422 --LEQRITYDLEMLETTGSCQSI---------ENYSRYLTGRNPGEPPPTLFE----YI- 465
             + Q +  D  +    G    +           Y +Y        P   L +    Y+ 
Sbjct: 279 SNINQILEGDYVIHVEFGIGIYMGAVNINDRDYLYIQYADNDKLYIPVEKL-DRISKYMS 337

Query: 466 ----PEDSLLFVDESHVTIPQISGMYRGDFHR------KATLAEYGFRLPSCMDNRPLRF 515
               P+   L          +I                K  L      LP   D   L  
Sbjct: 338 TGIAPKLYSLGTKGFKRREKRIREDVEKFAQELINIQAKRKLVRK---LPLIKD--TLWQ 392

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR-TQVEDVYDE 574
           EE+       +       +W+ ++    I   +   +G +   + +      + E     
Sbjct: 393 EEFEEKFSFNL-------TWDQQKAVEDIKHDL--ESGRLMDRILVGDVGYGKTEVAMRA 443

Query: 575 INLAAQQGLRILL----TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
              A + G +  +    TVL  +  E   +   +  I V  + S +      +++  L+ 
Sbjct: 444 AFKAIENGYQCAILAPTTVLANQHFERCHKRFEDFGISVNNL-SRLTGKNTDDVLDGLKN 502

Query: 631 GKFDVLVGIN-LLREGLDIPECGLVAILDADKEG 663
           GK D+++G + LL + +     GL+ I +  K G
Sbjct: 503 GKIDLVIGTHRLLGDDVKFKNLGLLIIDEEQKFG 536



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 69/170 (40%), Gaps = 9/170 (5%)

Query: 524 TTIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             + +SATP    L     GI    +I+ + +   P+     + Q +++   I     + 
Sbjct: 551 HLLTLSATPIPRTLNLALLGIRDISLIQSSPMDRLPIIT--QKIQEDEIKKVILKELSRD 608

Query: 583 LRILLTVLT-KRMAED---LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++       K MAE    L + + +  + + Y+H ++   E  + I D   GKFD+L+ 
Sbjct: 609 GQVFYITNNVKGMAEKQKSLKKLMPD-FVNIEYIHGKLSPREIKQKINDFDEGKFDILIA 667

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             ++  G+DI     + I +    G L     L   +GR  R     ++ 
Sbjct: 668 STIVENGIDITNANSIIIENYTSLG-LSQIYQLRGRVGRGKRQGYCYLLD 716


>gi|182680762|ref|YP_001828922.1| DEAD/DEAH box helicase domain-containing protein [Xylella
           fastidiosa M23]
 gi|182630872|gb|ACB91648.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
 gi|307579229|gb|ADN63198.1| DEAD/DEAH box helicase domain-containing protein [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 609

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R +    ++ +++  +R   I  L+ GK D+LV  ++   
Sbjct: 251 MIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     K +   I+ 
Sbjct: 311 GLDVERISHVLNYD-----IPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIER 365


>gi|126664485|ref|ZP_01735469.1| DNA and RNA helicase [Marinobacter sp. ELB17]
 gi|126630811|gb|EBA01425.1| DNA and RNA helicase [Marinobacter sp. ELB17]
          Length = 444

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 77/207 (37%), Gaps = 12/207 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI-----IRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           +  +++ SAT  +      +G++ + +     +R T        +       +       
Sbjct: 177 KRQSLLFSATFSNEIRTLAKGLLNDPVQIDVAVRNTTAESVIQSVYPVDQSQKTALLSKL 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +      ++L+   TK  A  LTE L +  I    +H       R   + + + G   VL
Sbjct: 237 VRDNSWEQVLVFTRTKHGANRLTEKLGKDGITAAAIHGNKSQGARTRALAEFKQGDIRVL 296

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLDI +   V   +             I   GRA  + ++  ++ AD +  S
Sbjct: 297 VATDIAARGLDIKQLPQVVNFELP--NVPEDYVHRIGRTGRAGESGHALSLVSADEL--S 352

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQ 723
           + + I++     +KQL   +     P+
Sbjct: 353 MLVGIEKLI---KKQLPRKEVEGFEPK 376


>gi|116671331|ref|YP_832264.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp.
           FB24]
 gi|116611440|gb|ABK04164.1| DEAD/DEAH box helicase domain protein [Arthrobacter sp. FB24]
          Length = 585

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 68/183 (37%), Gaps = 16/183 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--------DVY 572
              T++ SAT PG       + +     IR     D  +  R  R  +         +V 
Sbjct: 220 VRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSMDKIEVV 279

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +G R ++   TKR A  + E L +R      +H ++    R + +R  R  K
Sbjct: 280 ARILQARGRG-RTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNNK 338

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            DVLV  ++   G+D+ +   V          +  +   +  +GR  R  N    + + D
Sbjct: 339 VDVLVATDVAARGIDVDDVTHVINYQC-----VEDEKIYLHRVGRTGRAGNKGTAVTFVD 393

Query: 692 TIT 694
              
Sbjct: 394 WDD 396


>gi|134113761|ref|XP_774465.1| hypothetical protein CNBG1110 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257103|gb|EAL19818.1| hypothetical protein CNBG1110 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 620

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 67/193 (34%), Gaps = 19/193 (9%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V +   AE+L + L    I+V  +H      +R E I+D R+G   +LV   +L  G
Sbjct: 426 LIFVQSIDRAEELYKTLVLDGIKVDAVHGGKAKTKRDEAIKDFRVGAVWMLVVTEVLARG 485

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDET 704
           +D     +V   D     F ++  S I  IGR  R     K I + +         I   
Sbjct: 486 MDFRGVKVVINYD-----FPQTVPSYIHRIGRTGRAGRPGKAITFFNIEDGPYLRTIANV 540

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
            R                  V E ++++  P   E           + +    +      
Sbjct: 541 LRSSGC-------------PVPEYMLDMKKPTKNEKKKLAKAPPKRKAVGGGGRDLNREA 587

Query: 765 KSLRKQMHLAADN 777
              +KQM  A+  
Sbjct: 588 GKKKKQMVEASKK 600


>gi|241022870|ref|XP_002406042.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215491869|gb|EEC01510.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 274

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 72/167 (43%), Gaps = 10/167 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV---DPPVEIRSAR-TQVEDVYDEINLAA 579
            T++ SAT         +  +V+ ++   G++   +  V+    + TQ +     + +  
Sbjct: 26  QTLMFSATFPEAIQMLAREFLVDSVMLSVGILGAANSDVKQAIYQVTQFDKRNKLLEILG 85

Query: 580 QQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++G  R+++ V  K+ A+ L  ++ ++ I+   +H +    +R E + D R G   V+V 
Sbjct: 86  EEGSDRVMVFVEKKKTADFLAAFISQKGIKTTSIHGDRYQRQREEALADFRRGTCPVIVA 145

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             +   GLDI +   V   D       +S    +  +GR  R  N  
Sbjct: 146 TAVAARGLDIKDVRHVVNYD-----LPQSVDEYVHRVGRTGRVGNLG 187


>gi|149197724|ref|ZP_01874774.1| probable ATP-dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
 gi|149139294|gb|EDM27697.1| probable ATP-dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
          Length = 482

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 96/261 (36%), Gaps = 32/261 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI-------- 575
            T++ SAT         + ++ + +I         +E RS     E++ +          
Sbjct: 180 QTVLCSATFTDDIKNFSKTLLKKPVI---------IEDRSNIGSEENLEEWAVSVYPENH 230

Query: 576 ------NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                  L   +  ++++    K   +++ E L +    V  +HS ++   R + ++  R
Sbjct: 231 LKLTEKLLKKHKNDQVIVFCNHKERVDEVAEKLDDMGFDVHPLHSGMEKNVRNQALKLFR 290

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
             +  +LV  ++   G+DIP   LV   D             +   GR AR   S  VI 
Sbjct: 291 DKQVRILVATDVASRGIDIPGLPLVVNYD-----LPYDFPDYVHRAGRTARAGKSGLVIS 345

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNK---KHNINPQSVKEKIMEVIDPILLEDAATTN 745
           + +   +    + +E T R+  ++  N+   +  ++ + + +K  + +         +  
Sbjct: 346 FYNGRKEKTIKSFEERTGRQMLRVSFNQIMDEKQVSQKPLAKKKQDSVRKKANIRDCSRI 405

Query: 746 ISIDAQQLSLSKKKGKAHLKS 766
           I    ++  L+    K  L  
Sbjct: 406 IVYGGKKQGLNNGLLKKILAK 426


>gi|153823200|ref|ZP_01975867.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|126519288|gb|EAZ76511.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
          Length = 235

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 10/151 (6%)

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           D    I  A   V+   D +    ++G   ++L+ + TK  A  L  YL E+ +    +H
Sbjct: 1   DVEQCIYPAD--VKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIH 58

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
                  R   + D + G+  +LV  ++   G+DIP+   V   +  K          + 
Sbjct: 59  GNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKI-----AEDYVH 113

Query: 674 TIGRAARNVN-SKVILYADTITKSIQLAIDE 703
            IGR  R     K I     I      AI+ 
Sbjct: 114 RIGRTGRAGEVGKAISLVSAIEAPELFAIER 144


>gi|58269832|ref|XP_572072.1| ATP dependent RNA helicase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|74684010|sp|Q5KDK3|ROK1_CRYNE RecName: Full=ATP-dependent RNA helicase ROK1
 gi|57228308|gb|AAW44765.1| ATP dependent RNA helicase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 620

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 67/193 (34%), Gaps = 19/193 (9%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V +   AE+L + L    I+V  +H      +R E I+D R+G   +LV   +L  G
Sbjct: 426 LIFVQSIDRAEELYKTLVLDGIKVDAVHGGKAKTKRDEAIKDFRVGAVWMLVVTEVLARG 485

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDET 704
           +D     +V   D     F ++  S I  IGR  R     K I + +         I   
Sbjct: 486 MDFRGVKVVINYD-----FPQTVPSYIHRIGRTGRAGRPGKAITFFNIEDGPYLRTIANV 540

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
            R                  V E ++++  P   E           + +    +      
Sbjct: 541 LRSSGC-------------PVPEYMLDMKKPTKNEKKKLAKAPPKRKAVGGGGRDLNREA 587

Query: 765 KSLRKQMHLAADN 777
              +KQM  A+  
Sbjct: 588 GKKKKQMVEASKK 600


>gi|25809054|gb|AAN74635.1| DEAD box RNA helicase [Pisum sativum]
 gi|40950574|gb|AAR97917.1| DEAD box RNA helicase [Pisum sativum]
          Length = 413

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 78/194 (40%), Gaps = 18/194 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSI 697
            V I +     + +
Sbjct: 377 GVAINFVTKDDERM 390


>gi|302815317|ref|XP_002989340.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii]
 gi|300142918|gb|EFJ09614.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii]
          Length = 653

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 5/118 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+   TK   E+L ++L +   +V  +H +     R+++++  + G+F VLV  ++   
Sbjct: 431 VLVFASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVLVATDVAAR 490

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLDI     V   D  K+         +  +GR  R  + + + Y     K  + A D
Sbjct: 491 GLDIKSIKTVVNYDTAKDMDTH-----VHRVGRTGRAGDKEGVAYTLVAQKEARFAGD 543


>gi|226305684|ref|YP_002765644.1| ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
 gi|226184801|dbj|BAH32905.1| putative ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
          Length = 474

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 92/257 (35%), Gaps = 36/257 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +          ++SH+ + ++  +   +        + GF LP          E
Sbjct: 105 TPGRLLD--------LANQSHLILGKVGVLVLDEADEM---LDLGF-LPD--------IE 144

Query: 517 EWNCLRP---TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART----QV 568
               + P    T++ SAT PG         +     IR        V  R+++       
Sbjct: 145 RLMGMVPDKRQTMLFSATMPGPIITLARTFLTQPTHIRAEEAESSAVHDRTSQHIYRAHA 204

Query: 569 EDVYDEINLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            D  + +    Q   R   ++   TKR A+ + + L ER   V  +H ++  + R + ++
Sbjct: 205 LDKAEMVARVLQAEGRGATMIFTRTKRTAQKVADDLAERGFSVGAVHGDLGQIAREKALK 264

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R GK DVLV  ++   G+DI +   V             + + +  IGR  R   + +
Sbjct: 265 GFRNGKVDVLVATDVAARGIDIDDVTHVINY-----QCPEDEKTYVHRIGRTGRAGRTGI 319

Query: 687 -ILYADTITKSIQLAID 702
            +   D         ID
Sbjct: 320 AVTLVDWDDIPRWQLID 336


>gi|225181200|ref|ZP_03734646.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
 gi|225168169|gb|EEG76974.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
          Length = 470

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 90/271 (33%), Gaps = 46/271 (16%)

Query: 524 TTIVVSAT-PGSWEL---------EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
            T++ SAT PG  E          ++      E  +  T      +E R    Q  DV  
Sbjct: 177 QTLLFSATMPGPIEQLARRFMRDPQKISVRSKEVTVPNTEQFHMVMEER----QKFDVLC 232

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +       L  ++   TKR  ++L E L +R      +H ++    R  ++R  + G  
Sbjct: 233 RLLDTQSPDL-AIVFGRTKRRVDELYEALNKRGYSAEGIHGDMTQARRDSVMRQFKDGSI 291

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
           D+LV  ++   GLDI     V   D       +   S +  IGR  R  N+   + +   
Sbjct: 292 DILVATDVAARGLDITGVTHVYNFD-----IPQDPESYVHRIGRTGRAGNTGMAVTFVSN 346

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNI----NPQSVKEKIMEVIDPILLEDAATTNISI 748
                   I           E+  K  I     P +VKE I       + +   T     
Sbjct: 347 REVGHLRTI-----------EYGTKSRIPRLSTP-TVKEAIEGQQRIAVEKLLKTVESED 394

Query: 749 DAQQLSLSKKKGKAH---------LKSLRKQ 770
                 L+ +    H         LK L K+
Sbjct: 395 ITHYQPLADELLNEHDAETILAAALKMLTKE 425


>gi|167630436|ref|YP_001680935.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
 gi|167593176|gb|ABZ84924.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
          Length = 540

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 95/264 (35%), Gaps = 30/264 (11%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPT--GLVDPPVEIRSAR---TQVEDVYDEINL 577
            T++ SAT PG  +    Q +   + +  +   L  P +E        +Q  D    I  
Sbjct: 193 QTLLFSATMPGPIQQLARQYMKEPEFVTISRDKLTVPLIEQVYYECKESQKVDALCRILD 252

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             + G   ++   TKR  ++L   L  R      +H ++   +R  +++  R GK ++L+
Sbjct: 253 MEEIG-SSIIFCRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLI 311

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLD+     V   D       +   S +  IGR  R     +           
Sbjct: 312 ATDVAARGLDVENVTHVINYD-----IPQDPESYVHRIGRTGRAGRKGI----------- 355

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
             AI     R  +QL+      +    ++ + +  +  I+        + I         
Sbjct: 356 --AITLINYREYRQLK--LIERVTKARIQRRDLPSMADIVERQKEAHKMKIVKLLDGGHF 411

Query: 758 KKGKAHLKSLRKQ---MHLAADNL 778
            + K+ +  L ++   M +AA  L
Sbjct: 412 GEYKSIISELAEEYDPMEIAAATL 435


>gi|71898665|ref|ZP_00680835.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|71731612|gb|EAO33673.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
          Length = 609

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R +    ++ +++  +R   I  L+ GK D+LV  ++   
Sbjct: 251 MIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     K +   I+ 
Sbjct: 311 GLDVERISHVLNYD-----IPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIER 365


>gi|312218365|emb|CBX98311.1| similar to ATP-dependent RNA helicase dhh1 [Leptosphaeria maculans]
          Length = 511

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 93/286 (32%), Gaps = 43/286 (15%)

Query: 465 IPEDSLLFVDESHVTIP------QISGMYRGDFHRKATLA--EYGFRLPSCMDNRPLRFE 516
           + +D +   D  H+ +        ++G    D     T    E    L         +  
Sbjct: 158 LKDDIIRLSDPVHIIVGTPGRILDLAGKGVADLSACQTFVMDEADKLLSPEFTPVVEQLL 217

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT                +E+     + +  I +    V+   ++  
Sbjct: 218 GFHPKDRQVMLFSATFPIVVKSFKDKHMNSPYEINLMDELTLRGITQYYAFVEEKQKVH- 276

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 277 -------CLNTLFNKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNR 328

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 329 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 383

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +       ++    D     R +Q    +   I PQ +++ +
Sbjct: 384 LGLAI-------NLINWEDRFNLYRIEQELGTEIQPI-PQVIEKNL 421


>gi|330932532|ref|XP_003303815.1| hypothetical protein PTT_16176 [Pyrenophora teres f. teres 0-1]
 gi|311319958|gb|EFQ88104.1| hypothetical protein PTT_16176 [Pyrenophora teres f. teres 0-1]
          Length = 512

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 93/286 (32%), Gaps = 43/286 (15%)

Query: 465 IPEDSLLFVDESHVTIP------QISGMYRGDFHRKATLA--EYGFRLPSCMDNRPLRFE 516
           + +D +   D  H+ +        ++G    D     T    E    L         +  
Sbjct: 157 LKDDIIRLSDPVHIIVGTPGRILDLAGKGVADLSACQTFVMDEADKLLSPEFTPVVEQLL 216

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT                +E+     + +  I +    V+   ++  
Sbjct: 217 GFHPKDRQVMLFSATFPIVVKSFKDKHMNSPYEINLMDELTLRGITQYYAFVEEKQKVH- 275

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 276 -------CLNTLFNKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNR 327

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 328 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 382

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +       ++    D     R +Q    +   I PQ +++ +
Sbjct: 383 LGLAI-------NLINWEDRFNLYRIEQELGTEIQPI-PQVIEKNL 420


>gi|297847510|ref|XP_002891636.1| hypothetical protein ARALYDRAFT_474250 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337478|gb|EFH67895.1| hypothetical protein ARALYDRAFT_474250 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 392

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 15/181 (8%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPT-----GLVDPPVEIRSARTQVEDVYDEI 575
              ++SAT     LE  +  +   V  +++P      G+    V++     + + + D  
Sbjct: 197 QVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLY 256

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   + ++   T++  + LTE +   N  V  MH + +  ER EI+   R  K  V
Sbjct: 257 GRLIIN--QAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDEIMNQFRSFKSRV 314

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   G+D+     V   D        +    I  IGRA R     V +     + 
Sbjct: 315 LIASDVWARGIDVQTVSHVINYD-----IPNNPELYIHRIGRAGRFGREGVAINFVKSSD 369

Query: 696 S 696
            
Sbjct: 370 M 370


>gi|189194769|ref|XP_001933723.1| ATP-dependent RNA helicase DHH1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187979287|gb|EDU45913.1| ATP-dependent RNA helicase DHH1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 512

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 93/286 (32%), Gaps = 43/286 (15%)

Query: 465 IPEDSLLFVDESHVTIP------QISGMYRGDFHRKATLA--EYGFRLPSCMDNRPLRFE 516
           + +D +   D  H+ +        ++G    D     T    E    L         +  
Sbjct: 157 LKDDIIRLSDPVHIIVGTPGRILDLAGKGVADLSACQTFVMDEADKLLSPEFTPVVEQLL 216

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT                +E+     + +  I +    V+   ++  
Sbjct: 217 GFHPKDRQVMLFSATFPIVVKSFKDKHMNSPYEINLMDELTLRGITQYYAFVEEKQKVH- 275

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 276 -------CLNTLFNKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNR 327

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 328 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 382

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +       ++    D     R +Q    +   I PQ +++ +
Sbjct: 383 LGLAI-------NLINWEDRFNLYRIEQELGTEIQPI-PQVIEKNL 420


>gi|3776021|emb|CAA09211.1| RNA helicase [Arabidopsis thaliana]
          Length = 441

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 80/200 (40%), Gaps = 18/200 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 232 YDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 291

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 292 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 349

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 350 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 404

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +  +  + +   I  
Sbjct: 405 GVAINFMTSEDERMMADIQR 424


>gi|320586497|gb|EFW99167.1| dead deah box DNA helicase [Grosmannia clavigera kw1407]
          Length = 662

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 73/208 (35%), Gaps = 38/208 (18%)

Query: 563 SARTQVEDVYDEINLAAQQGL-----------RILLTVLTKRMAEDLTEYLYERNIRVRY 611
           S+   ++ V    + A ++             R ++ V  K+MA++L + LY   +    
Sbjct: 367 SSHGNIQQVISYTDPANKRKAVVELLNSIPPGRTIIFVNRKQMADELDDLLYNLGLPCTS 426

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +H+    +ER + +R  R G+  +L+   +   G+D+     V   D             
Sbjct: 427 IHAGRTQMEREDAMRAFRSGECPILIATGVAARGIDVHNVNHVINYDLPSCDHG-GIEEY 485

Query: 672 IQTIGRAARNVNSKVI--LYAD---TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           +  IGR  R  +  +    Y D    I   +   + ET                     K
Sbjct: 486 VHRIGRTGRIGHRGLATSFYTDRDEPIASVLTRTLLET---------------------K 524

Query: 727 EKIMEVIDPILLEDAATTNISIDAQQLS 754
           + I + ++  + E  A  N+  +A    
Sbjct: 525 QTIPDFLEQYVPEGEARENLKFEADSDY 552


>gi|302782918|ref|XP_002973232.1| hypothetical protein SELMODRAFT_267628 [Selaginella moellendorffii]
 gi|300158985|gb|EFJ25606.1| hypothetical protein SELMODRAFT_267628 [Selaginella moellendorffii]
          Length = 597

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 10/131 (7%)

Query: 571 VYDEINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           + D I+     G       +L+ V TKR A+ L ++L         +H +    ER + +
Sbjct: 392 LMDIIHGQKAIGANGQPPLMLVFVETKRGADALEDWLIRSGFPATTIHGDRTQPEREQAL 451

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           R  R G   +LV  ++   GLDIP    V   D             +  IGR  R  NS 
Sbjct: 452 RCFRTGMTPILVATDVAARGLDIPHVAHVINYD-----LPSDIDDYVHRIGRTGRAGNSG 506

Query: 686 VILYADTITKS 696
           +     T   S
Sbjct: 507 LATAFFTDKDS 517


>gi|289548721|ref|YP_003473709.1| DEAD/DEAH box helicase [Thermocrinis albus DSM 14484]
 gi|289182338|gb|ADC89582.1| DEAD/DEAH box helicase domain protein [Thermocrinis albus DSM
           14484]
          Length = 365

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 76/199 (38%), Gaps = 15/199 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIR----SARTQVEDVYDE 574
           R  T + SAT      E  +  + E    +   T  + P +E R    S+  Q     ++
Sbjct: 174 RRQTFMFSATLPRQVEELAKRYLREHYRVVKVYTPELRPKIEERLIRLSSSAQKLSELEK 233

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I        ++++ V TK+ A+DL E L  +      +H ++   +R   ++  R GK  
Sbjct: 234 IL-REHLLEKVIVFVKTKKDAKDLHEVLRRKGFNAVALHGDMTQRQRESALKLFRDGKVK 292

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           ++V  ++   GLDI   GLV                 I  IGR  R  +        T  
Sbjct: 293 IVVATDVASRGLDIKGVGLVINYH-----LPEDPEIYIHRIGRTGRIGSYGKAYSFVTPE 347

Query: 695 KSIQLAIDETTRRREKQLE 713
            S   A+    R +EK + 
Sbjct: 348 DS--RALWRIKRLKEKLIA 364


>gi|228477095|ref|ZP_04061733.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           salivarius SK126]
 gi|228251114|gb|EEK10285.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           salivarius SK126]
          Length = 528

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 98/261 (37%), Gaps = 23/261 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
            T++ SAT     +++     ++      I+   L +  V+    R + ++ +D +    
Sbjct: 176 QTLLFSAT-MPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLM 234

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ +IRD +  + D+LV
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   S   +      +  
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMG 349

Query: 698 QLAIDET-TRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
            L I E  T++R K       Q     K  +  + ++    +  D  +  +         
Sbjct: 350 YLGIIENLTKKRMKGLKPPTAQEAFQAKKKVALKKIER---DFADEAIRSNFDKFKGDAV 406

Query: 750 AQQLSLSKKKGKAHLKSLRKQ 770
                 + ++   ++ SL  Q
Sbjct: 407 KLAQEFTPEELALYILSLTVQ 427


>gi|227514325|ref|ZP_03944374.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum
           ATCC 14931]
 gi|227087297|gb|EEI22609.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum
           ATCC 14931]
          Length = 495

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 15/193 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVE---IRSARTQVEDVYDEIN 576
            T++ SAT    E+++     +       I+   L    V+   +R+   +  D+   + 
Sbjct: 179 QTLLFSAT-MPPEIKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRMI 237

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                 L  ++   TKR  ++L+  L  R      +H ++    R +I+R  + G  D+L
Sbjct: 238 DVQDPDL-TIVFGRTKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDIL 296

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLDI     V   D           S +  IGR  R  +  V L   T  + 
Sbjct: 297 VATDVAARGLDISGVTHVYNYD-----IPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEM 351

Query: 697 IQ-LAIDETTRRR 708
                I++ TR R
Sbjct: 352 NYLHEIEKLTRAR 364


>gi|184154685|ref|YP_001843025.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
 gi|183226029|dbj|BAG26545.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
          Length = 492

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 15/193 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVE---IRSARTQVEDVYDEIN 576
            T++ SAT    E+++     +       I+   L    V+   +R+   +  D+   + 
Sbjct: 176 QTLLFSAT-MPPEIKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRMI 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                 L  ++   TKR  ++L+  L  R      +H ++    R +I+R  + G  D+L
Sbjct: 235 DVQDPDL-TIVFGRTKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDIL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLDI     V   D           S +  IGR  R  +  V L   T  + 
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEM 348

Query: 697 IQ-LAIDETTRRR 708
                I++ TR R
Sbjct: 349 NYLHEIEKLTRAR 361


>gi|149724020|ref|XP_001503919.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Equus
           caballus]
          Length = 597

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    + V  +H++    +R   +   R GK
Sbjct: 401 MRELVKKGFNPPVLVFVQSIERAKELFRELIYEGVNVDVIHADRTQQQRDNTVHSFRAGK 460

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  +  K + +  
Sbjct: 461 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGHKGKAVTFFT 515

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 516 EDDKPLLRSV 525


>gi|126644118|ref|XP_001388195.1| hypothetical protein [Cryptosporidium parvum Iowa II]
 gi|126117268|gb|EAZ51368.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
          Length = 586

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 19/171 (11%)

Query: 542 GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
              ++Q +      +   +++    QV           +   ++L+   TKR A+ LT+ 
Sbjct: 386 SHNIKQYVNVVEESEKKAKLKMFLGQV---------MVESAPKVLIFCETKRGADILTKE 436

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L         +H + K  ER  ++ + R G   +++  ++   GLDI +   V   D   
Sbjct: 437 LRLDGWPALCIHGDKKQEERTWVLNEFRTGASPIMIATDVAARGLDIKDINFVINFD--- 493

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-----SIQLAIDETTRR 707
             F       I  IGR  R   + V L   T  K      +   + E  +R
Sbjct: 494 --FPNQIEDYIHRIGRTGRAGATGVSLSFFTPDKYRMASDLIKVLKEAKQR 542


>gi|187608185|ref|NP_001119895.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
 gi|169154730|emb|CAQ14635.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
          Length = 709

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 15/181 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT    E++      +E+ I          +  +   V       +   + D +
Sbjct: 425 QTMMFSAT-FPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLL 483

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R G+  +
Sbjct: 484 NATGKDSL-TLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPI 542

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +V   +   GLDI     V   D             +  IGR  R  N  +         
Sbjct: 543 MVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLGLATSFYNDKN 597

Query: 696 S 696
           S
Sbjct: 598 S 598


>gi|124481673|gb|AAI33163.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
          Length = 709

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 15/181 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT    E++      +E+ I          +  +   V       +   + D +
Sbjct: 425 QTMMFSAT-FPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLL 483

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R G+  +
Sbjct: 484 NATGKDSL-TLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPI 542

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +V   +   GLDI     V   D             +  IGR  R  N  +         
Sbjct: 543 MVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLGLATSFYNDKN 597

Query: 696 S 696
           S
Sbjct: 598 S 598


>gi|91784149|ref|YP_559355.1| putative ATP-dependent RNA helicase [Burkholderia xenovorans LB400]
 gi|91688103|gb|ABE31303.1| Putative ATP-dependent RNA helicase [Burkholderia xenovorans LB400]
          Length = 537

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 74/215 (34%), Gaps = 25/215 (11%)

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVD---PPVEIRSARTQVEDVYDEINLAAQQGL 583
           +V+ATP + +       +  +I   TG +      +EI     Q  ++   ++    +  
Sbjct: 239 IVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRMEQRTNIAQTVHYVDDRDH 298

Query: 584 R---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +                ++   TK  A+ L   L +       +H ++    R   IR L
Sbjct: 299 KDRLLDHLLRDSGLDQAIVFTATKIDADQLAGRLADAGFESAALHGDLPQGARNRTIRAL 358

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R  +  VLV  ++   G+DIP    V   D  K          +  IGR  R   S + +
Sbjct: 359 RERRVRVLVATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGIAV 413

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
               +  + Q A+    R     L  N      P+
Sbjct: 414 SL--VHHAEQGALKRIERFVRTPLAVNVVEGFEPR 446


>gi|56201870|dbj|BAD73320.1| putative ethylene-responsive RNA helicase [Oryza sativa Japonica
           Group]
          Length = 521

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 15/187 (8%)

Query: 524 TTIVVSAT-PGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E        +  + II  + ++    +   VEI S  +Q  +    +
Sbjct: 245 QTLYWSATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILS-ESQKYNKLVNL 303

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G RIL+ + TK+  + +T  L         +H +    ER  ++ + + GK  +
Sbjct: 304 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPI 363

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  S    +  IGR  R        Y      
Sbjct: 364 MTATDVAARGLDVKDVKYVINYD-----FPGSLEDYVHRIGRTGRAGAKGTA-YTFFTAA 417

Query: 696 SIQLAID 702
           + + A D
Sbjct: 418 NARFAKD 424


>gi|2500515|sp|Q40469|IF4A6_TOBAC RecName: Full=Eukaryotic initiation factor 4A-6; Short=eIF-4A-6;
           AltName: Full=ATP-dependent RNA helicase eIF4A-6
 gi|485947|emb|CAA55740.1| unnamed protein product [Nicotiana tabacum]
          Length = 253

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 79/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     + SAT  P + E+ +       +I+         G+    V +   
Sbjct: 45  YDIFQLLPPKIQVGIFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 104

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 105 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDII 162

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 163 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 217

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 218 GVSINFVTKDDERMLFDI 235


>gi|167382648|ref|XP_001736203.1| ATP-dependent RNA helicase DBP2 [Entamoeba dispar SAW760]
 gi|165901364|gb|EDR27447.1| ATP-dependent RNA helicase DBP2, putative [Entamoeba dispar SAW760]
          Length = 535

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 3/140 (2%)

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               V   VE+   R + +   +EI        ++L+ V TKR A++L   L ++  RV 
Sbjct: 368 ANESVKQIVEVCQERDR-DSKMNEIVKRIGSEKKVLIFVKTKRSADNLCYKLRDQRYRVA 426

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            MH +    ER   + D + G  + L+  +L   GLDI    +V   +   +  + +   
Sbjct: 427 CMHGDKAQAERDRALSDFKSGAVNYLIATDLASRGLDIRNIEIVINYEMPSD--IENYIH 484

Query: 671 LIQTIGRAARNVNSKVILYA 690
            I   GR  R+V  + I   
Sbjct: 485 RIGRTGRMGRSVEGEAISLF 504


>gi|146197776|dbj|BAF57607.1| DEAD box RNA helicase Me31B [Dugesia japonica]
          Length = 503

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 73/196 (37%), Gaps = 22/196 (11%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E+     + ++ I +    V    ++           + +    Q    I +   T +
Sbjct: 247 PYEINLMDELTLKGISQYYAYVQERQKVH--------CLNTLFSRLQINQSI-IFCNTAQ 297

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L + + +      Y+H+++  + R  +  + R G    LV  +L   G+DIP   +
Sbjct: 298 RVELLAKKITDLGYSCYYIHAKMNQVYRNRVFHEFRNGNCRNLVCTDLFTRGIDIPSVNV 357

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           V   D  K        + +  IGR+ R  +  V +   T     + A+      +  + +
Sbjct: 358 VINFDFPKY-----AETYLHRIGRSGRYGHLGVAVNLITYDD--RFAL------KNIETQ 404

Query: 714 HNKKHNINPQSVKEKI 729
            N +    P+ + +++
Sbjct: 405 LNTEIKAIPKHIDKRL 420


>gi|21223065|ref|NP_628844.1| DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
 gi|7321275|emb|CAB82053.1| putative DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
          Length = 473

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 17/156 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D +      A +  R+L+ + TK   + LT++L    +R   +H      +R   +   +
Sbjct: 272 DKHAATTEIAARDGRVLMFLDTKHAVDRLTDHLLNSGVRAAALHGGKSQSQRTRTLAQFK 331

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ +    LV  +D   +         +   GR AR   S  ++ 
Sbjct: 332 TGHVTVLVATNVAARGIHVDNLDLVVNVDPPSD-----HKDYLHRGGRTARAGESGSVVT 386

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
             T             +RR           I PQ+ 
Sbjct: 387 LVTP-----------NQRRAMTRLMTTA-GIVPQTT 410


>gi|320534382|ref|ZP_08034868.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133424|gb|EFW25886.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 861

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 12/177 (6%)

Query: 538 EQCQGIIVEQIIRPTGLVDPP---VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           +     +  ++ RP   V        +   R ++  V   + +        ++ V TK  
Sbjct: 355 QHLHEPVQVEVSRPASTVATVHQTYAVVPFRHKIGAVSRVLAVTDA--EAAIVFVRTKST 412

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AED+   L  R I+   +  +V   ER  ++  LR G  DVLV  ++   GLD+   GLV
Sbjct: 413 AEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLVATDVAARGLDVDRIGLV 472

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE-TTRRRE 709
              D  +E       + +  IGR  R       + +     K     I+  T  R E
Sbjct: 473 VNFDVPRE-----AEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIERLTGSRLE 524


>gi|281207155|gb|EFA81338.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1157

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 71/194 (36%), Gaps = 20/194 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRP--------TGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT   +++EQ    I+ + +             V+  VE+R + T+   + + +
Sbjct: 695 QTVMFSAT-FPFKVEQVARKILVKPLEIIAGGRSIVCSDVEQVVEVRPSETRYRRLIELL 753

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                +G  IL+    +   ++L   L     +   +H      +R E I D +     +
Sbjct: 754 ATWYHKGQ-ILIFTNKQDATDNLFGLLSRAGYQCLSLHGSKDQTDRDETISDFKNKIKTI 812

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD---- 691
           L+   L   GLD+ +  LV   D             +  +GR  R  N            
Sbjct: 813 LIATPLASRGLDVKDLNLVINYDC-----PDHLEDYVHRVGRTGRAGNKGTAYTFVLPDE 867

Query: 692 -TITKSIQLAIDET 704
                SI  A++++
Sbjct: 868 GRFAPSIIKALEQS 881


>gi|225442260|ref|XP_002279117.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743075|emb|CBI35942.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 89/238 (37%), Gaps = 28/238 (11%)

Query: 470 LLFVDESHVT-IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP--TTI 526
           L+ + ESH T + +++ +   +  R     + GF         P   +  + +RP   T+
Sbjct: 234 LIDMLESHHTNLRRVTYLVLDEADRM---LDMGFE--------PQIRKIVSQIRPDRQTL 282

Query: 527 VVSAT-PGSWEL-------EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
             SAT P   E          C+ +I    ++    +   VEI S   Q  +   ++   
Sbjct: 283 YWSATWPKEVEQLARKFLYNPCKVVIGSADLKANHAIRQHVEIVS-ENQKYNRLVKLLED 341

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
              G RIL+ + TK+  + +T  L         +H +    ER  ++ + + GK  ++  
Sbjct: 342 IMDGGRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA 401

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            ++   GLD+ +   V   D     F  S    +  IGR  R           T   +
Sbjct: 402 TDVAARGLDVKDVKFVINYD-----FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 454


>gi|224538852|ref|ZP_03679391.1| hypothetical protein BACCELL_03748 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519527|gb|EEF88632.1| hypothetical protein BACCELL_03748 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 478

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 71/196 (36%), Gaps = 29/196 (14%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA--- 578
           +  T+  SAT     +      + + ++R        VE+  A + VE +   +      
Sbjct: 183 KKQTLFFSAT-----MPDSIDRLAKSLLRNP----ARVEVTPASSVVEIISQSVYRVEKP 233

Query: 579 -----------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
                       + G ++L+   TK  A+++  YL  R I    +H +     R   + +
Sbjct: 234 QKKELLAQLLLGEAGHQVLVFSRTKHGADNIARYLSRRGITCESIHGDKSQNSRQRALSN 293

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKV 686
            + G+ +V++  ++   G+DI    LV   D           + +  IGR  R     + 
Sbjct: 294 FKEGRSNVIIATDIAARGIDIKGLDLVLNYD-----LPDVPETYVHRIGRTGRAGCEGRA 348

Query: 687 ILYADTITKSIQLAID 702
           I +       +   I+
Sbjct: 349 IAFCSGEEVPMLREIE 364


>gi|94498002|ref|ZP_01304566.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
 gi|94422585|gb|EAT07622.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
          Length = 459

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 73/218 (33%), Gaps = 19/218 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            + + GF  P     + L  +         +  SAT    E+E   G  +   ++ +   
Sbjct: 159 QMMDMGFIHPLKRVAKLLPTDR------QNLFFSAT-MPKEIEALAGQFLNDPVKVSVAP 211

Query: 556 DPPVEIRSAR-----TQVE-DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
                 R  +      Q E      I L  +   R L+   TK  A+ +  +L    I  
Sbjct: 212 QSTTAERVRQQATFVNQAEKQALLHIVLETEDIDRALIFTRTKHGADRVVRFLEGAGIDA 271

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H      +R   ++  R GK  +LV  ++   G+D+     V   +           
Sbjct: 272 FAIHGNKSQGQRTTALQAFRQGKVKLLVATDIAARGIDVSGVSHVINFE-----IPNVPE 326

Query: 670 SLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDETTR 706
             +  IGR AR     V I +     +    AI+  TR
Sbjct: 327 QYVHRIGRTARAGAEGVAISFVADDERPYLKAIERATR 364


>gi|49119283|gb|AAH73332.1| LOC398189 protein [Xenopus laevis]
          Length = 727

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 19/178 (10%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIR-----------PTGLVDPPVE-IRSARTQVED 570
           P T++ SAT   W     +  + +Q  +            T +    +E  RS +  V  
Sbjct: 330 PQTLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQKAATTVEHLAIECTRSQKAAV-- 387

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D + + +    + ++   +K  A  L           + +H +++  ER  +++  R 
Sbjct: 388 LGDLVQVYSGSHGKTIIFCDSKLEAHTLATSCGSLKQSAKSLHGDLQQKEREVVLKGFRQ 447

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           G F+VL+  N+   GLDIPE  LV +  A KE       + +   GR  R   + V +
Sbjct: 448 GTFEVLIATNVAARGLDIPEVDLVVLYSAPKE-----ADAYVHRSGRTGRAGRTGVCI 500


>gi|21232073|ref|NP_637990.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|21113816|gb|AAM41914.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 642

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     K +  AI+ 
Sbjct: 311 GLDVERVSHVLNYD-----IPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRAIER 365

Query: 704 TTRR 707
            TR+
Sbjct: 366 ATRQ 369


>gi|329912990|ref|ZP_08275858.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545464|gb|EGF30669.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
          Length = 410

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 94/285 (32%), Gaps = 57/285 (20%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +           ++ V   Q+  +   +  R     + GF       +R L  E
Sbjct: 131 TPGRLLD--------LYRQNAVKFEQLQTLVLDEADRM---LDLGF-------SRELD-E 171

Query: 517 EWNCL--RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP--VEIRSARTQVEDVY 572
            +  L  +  T++ SAT                    T L+D P  +EI    T V+ + 
Sbjct: 172 VFAALPKKRQTLLFSATFSDEIRALS-----------TTLLDNPVRIEISPRNTPVKTIK 220

Query: 573 DEINLAAQQGL--------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
                  ++                ++L+ V T+R  ++L + L  + IR   +H +   
Sbjct: 221 QWAIPVDKKRKPELFLHLLKKHRWGQVLVFVKTRRGVDELVDILLAQGIRADAIHGDKPQ 280

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
             R+  +   +     +LV  ++   GLDI +   V   D             I  IGR 
Sbjct: 281 PARLRALEGFKSRDVQILVATDVAARGLDIDDLPQVVNFDLPIV-----AEDYIHRIGRT 335

Query: 679 ARNVNSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
            R   S   +         +  AI+  T    + L+ N +    P
Sbjct: 336 GRAGASGMAVSLLCADEAPLLAAIEMLT---GQNLQRNAEQGFEP 377


>gi|329115283|ref|ZP_08244038.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
 gi|326695726|gb|EGE47412.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
          Length = 488

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 30/197 (15%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT     +E     ++    R        VE+    + V+ +   +      G 
Sbjct: 230 QTLLFSAT-MPRSIEDLAASLLNDPAR--------VEVAPPSSTVDRIQQAVMFVNGAGD 280

Query: 584 ---------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
                          R ++  L K  A  + E+L + N+    +H       R   ++  
Sbjct: 281 KRDALLNMVESPKVSRAVVFTLMKHEANKVAEFLNKNNVVAEAIHGNKSQGARERAMKGF 340

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVI 687
           R G   VLV  ++   G+D+ +   V   D           S +  IGR AR   +   +
Sbjct: 341 RSGSVKVLVATDIAARGIDVDDVSHVFNYD-----LPNVPESYVHRIGRTARAGRDGWAV 395

Query: 688 LYADTITKSIQLAIDET 704
            + D   ++    I+ T
Sbjct: 396 SFCDAEQRAWLRDIERT 412


>gi|238059366|ref|ZP_04604075.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           sp. ATCC 39149]
 gi|237881177|gb|EEP70005.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           sp. ATCC 39149]
          Length = 576

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 13/161 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +     ++   ++   + LTE +  R  R   +H  +   +R  ++  LR G  D+LV 
Sbjct: 266 VESPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVA 325

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   GLD+ +   V   D        +  S +  IGR  R     V I  A+     +
Sbjct: 326 TDVAARGLDVEQLTHVVNYDV-----PSAPESYVHRIGRVGRAGREGVAITLAEPREHRM 380

Query: 698 QLAIDE-TTRRREK------QLEHNKKHNINPQSVKEKIME 731
              I+  T +R             N++  +   +++E ++E
Sbjct: 381 LKTIERVTGQRIAIDKIPTAADLRNRRLELTQAALRESLLE 421


>gi|258652378|ref|YP_003201534.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258555603|gb|ACV78545.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
           44233]
          Length = 586

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 78/216 (36%), Gaps = 19/216 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGS-WELEQ---CQGIIVEQIIR 550
            + + GF LP       L           T++ SAT PG    L +    + + +     
Sbjct: 211 EMLDLGF-LPDMEKVLDLVPT-----VKQTMLFSATMPGPILTLARTFMSRPMHIRAEAA 264

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIR 608
             G +         R    D  + +    Q   R   ++   TKR A  + E L ER   
Sbjct: 265 AEGAMHSTTRQFVYRAHALDKVEMLARVLQARGRGLTMVFTRTKRTAAKVAEDLEERGFA 324

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H ++    R + +R  R GK DVLV  ++   G+D+ +   V      +E     +
Sbjct: 325 AAAVHGDLGQGAREQALRAFRAGKVDVLVATDVAARGIDVDDVTHVINFQCPEE-----E 379

Query: 669 TSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
            + +  IGR  R   +   + + D         I++
Sbjct: 380 KTYVHRIGRTGRAGKTGTAVSFIDWDDIPRWQLINQ 415


>gi|224076698|ref|XP_002199492.1| PREDICTED: ATP-dependent RNA helicase ROK1 [Taeniopygia guttata]
          Length = 602

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 8/136 (5%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H++    +R  +++  R GK
Sbjct: 396 MRELVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDRVVQSFRAGK 455

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     +V   D        S    I  IGR  R  +  K + +  
Sbjct: 456 IWVLICSALLARGMDFKGVNMVINYD-----LPTSAVEYIHRIGRTGRAGHRGKAVTFFT 510

Query: 692 TITKSIQLAIDETTRR 707
              K +  +I    +R
Sbjct: 511 EDDKPLLRSIANVIQR 526


>gi|111023001|ref|YP_705973.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
 gi|110822531|gb|ABG97815.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
          Length = 586

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 22/189 (11%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++ V TK+  EDL E L  R      ++ ++   +R   I  L+ G  D+LV  ++ 
Sbjct: 251 EAMIIFVRTKQATEDLAEKLRSRGFSASAINGDIVQAQRERTIGQLKSGALDILVATDVA 310

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           S +  IGR  R   +   +L+     + +  AI
Sbjct: 311 ARGLDVDRISHVVNYD-----IPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAI 365

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761
           ++ TR                Q + E  +  +D +  +  +    SI     S +    +
Sbjct: 366 EKATR----------------QPLAEMQLPSVDDVNAQRVSKFGDSITESLTSDNLALFR 409

Query: 762 AHLKSLRKQ 770
             ++   ++
Sbjct: 410 KMIEDYEQE 418


>gi|53713588|ref|YP_099580.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
 gi|60681868|ref|YP_212012.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|253565577|ref|ZP_04843032.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|265763909|ref|ZP_06092477.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|52216453|dbj|BAD49046.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
 gi|60493302|emb|CAH08086.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|251945856|gb|EES86263.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|263256517|gb|EEZ27863.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|301163360|emb|CBW22910.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
          Length = 418

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 469 SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVV 528
           S   +DE+   +        G +     + +Y   LP   + + + F      +   +  
Sbjct: 151 SYFILDEADRMLD------MGFYEDIMQIVKY---LP--KERQTIMFSATMPAKIQQLAN 199

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
           +      E++       E+I++   +            Q +        A +   R+++ 
Sbjct: 200 TILNNPAEVKLAVSKPAEKIVQAAYVC--------YENQ-KLGIVRSLFAEEVPERVIIF 250

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
             +K   +++ + L    + V  MHS+++ ++R  I+ + + G+ ++LV  +++  G+DI
Sbjct: 251 ASSKIKVKEVAKALKMMKLNVGEMHSDLEQVQREFIMHEFKSGRINILVATDIVSRGIDI 310

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
            +  LV   D             +  IGR AR  N  V + + +   ++    I+
Sbjct: 311 DDIRLVINFDV-----PHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNFKNIE 360


>gi|50547433|ref|XP_501186.1| YALI0B21538p [Yarrowia lipolytica]
 gi|74660084|sp|Q6CDS6|ROK1_YARLI RecName: Full=ATP-dependent RNA helicase ROK1
 gi|49647052|emb|CAG83439.1| YALI0B21538p [Yarrowia lipolytica]
          Length = 547

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 75/189 (39%), Gaps = 11/189 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ + +   A+ L + L    I V  +H ++   +R  +I   R G+  VL+  ++L  
Sbjct: 367 VIIFLQSIDRAKALFKELVFDGINVDQIHGDMTAAKRASVIDRFRNGEVWVLICTDVLAR 426

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+D     LV   D       +S  S +  IGR  R       +   T   +  + +   
Sbjct: 427 GIDFRGINLVINYDV-----PQSAQSYVHRIGRTGRAGRLGKAVTFFTKEDATNVKVVVN 481

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
             ++  Q   +  +N+ P + KE+     D I         IS      +  KK+ K  +
Sbjct: 482 VMKQSGQEVPDWLNNLAPLTQKER-----DNIKNRPIKRKKISTQHALANNKKKRAKQQM 536

Query: 765 KSLRKQMHL 773
           K L K+M  
Sbjct: 537 KGL-KKMKK 544


>gi|332024917|gb|EGI65105.1| ATP-dependent RNA helicase abstrakt [Acromyrmex echinatior]
          Length = 625

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 80/230 (34%), Gaps = 17/230 (7%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D  H  +  +S            + + GF      D R + F  +   R  T++ SAT
Sbjct: 327 LMDMLHKKMVTLSVCRYLCMDEADRMIDMGFE----EDVRTI-FSFFKGQR-QTLLFSAT 380

Query: 532 PGSWELEQCQGIIVEQIIRPTG-----LVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                    +  +V+ +    G      ++   E+   + Q   +   +    +    +L
Sbjct: 381 MPKRIQNFARSALVKPVTINVGRAGAASMNVIQEVEYVK-QEAKIVYLLECLQKTAPPVL 439

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +    KR  + + EYL  + +    +H  +   ER   +   R G+ DVLV  ++  +GL
Sbjct: 440 IFAEKKRDVDAIHEYLLIKGVEAVAIHGGIDQEERSRSVEAFRAGRKDVLVATDVASKGL 499

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           D  +   V   D           + +  IGR  R+  + +          
Sbjct: 500 DFADVQHVINYD-----MPDDVENYVHRIGRTGRSGRTGIATTFINKAND 544


>gi|145614688|ref|XP_361928.2| hypothetical protein MGG_11403 [Magnaporthe oryzae 70-15]
 gi|152032666|sp|A4RN46|PRP5_MAGO7 RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|145021588|gb|EDK05717.1| hypothetical protein MGG_11403 [Magnaporthe oryzae 70-15]
          Length = 1012

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 34/225 (15%)

Query: 558 PVEIRSARTQVEDVYDEIN--LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
            VEIR  +++   + + +         +R L+ V  +  A++L   L  +      +H  
Sbjct: 602 IVEIRDEKSKFNRLLELLGELYKDDDDVRSLIFVERQEKADELLRELLRKGYGCMSLHGG 661

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
              ++R   I D + G   V++  ++   GLD+ +  LV   DA            +   
Sbjct: 662 KDQVDRDSTISDFKSGVCPVMIATSVAARGLDVKQLKLVVNYDA-----PNHLEDYVHRA 716

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
           GR  R  N+   +   T  +    AI                       + + + +   P
Sbjct: 717 GRTGRAGNTGTAVTFVTEEQE-NCAI----------------------GIAKALEQSGQP 753

Query: 736 ILLEDAATTNISIDAQQLSLSKKK---GKAHLKSLRKQMHLAADN 777
           +  +         +  +   +K +   G   L+ L K+   AA N
Sbjct: 754 VPEKLIEMRKAFREKVKAGKAKDQSGFGGKGLEKLDKE-REAARN 797


>gi|125556650|gb|EAZ02256.1| hypothetical protein OsI_24355 [Oryza sativa Indica Group]
          Length = 426

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+R  + LT+ +  R+  V   H ++    R  I+R+ R G   VL+  +LL  G
Sbjct: 296 VIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 355

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           +D+ +  LV   D           + +  IGR+ R     V I +     + +   I  
Sbjct: 356 IDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQR 409


>gi|85708371|ref|ZP_01039437.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
 gi|85689905|gb|EAQ29908.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
          Length = 484

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 16/193 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVED---VYDEINL 577
            T+  SAT      EL         Q+ + P       ++      Q ++   + + I  
Sbjct: 182 QTLFFSATMPKAIKELVSGYCNNPVQVSVTPESTTAERIDQYLFMVQQDEKQSLLELILS 241

Query: 578 AAQQG----LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
              +      RIL+   TK  A+ + + L    I    +H      +R   + + R GK 
Sbjct: 242 GRHKVPGEFERILIFTRTKHGADRVVKKLSRAGIPANAIHGNKSQPQRQRALDEFRRGKT 301

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
            +LV  ++   G+DIP    V   +             +  IGR AR     V I +   
Sbjct: 302 MILVATDVAARGIDIPGVSHVLNYE-----LPNVPEQYVHRIGRTARAGKDGVAIAFCAE 356

Query: 693 ITKSIQLAIDETT 705
             ++    I +TT
Sbjct: 357 DERAYLKDIRKTT 369


>gi|326534222|dbj|BAJ89461.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 205 YDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE 264

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 265 EWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDII 322

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 323 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 377

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 378 GVAINFVTREDERMLFDI 395


>gi|170727393|ref|YP_001761419.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169812740|gb|ACA87324.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 447

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 66/174 (37%), Gaps = 12/174 (6%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSAR-TQVEDVYD 573
           +  R  T++ SAT    E+ +    +++      +  + + +  +  +      ++    
Sbjct: 176 DHKRRQTLMFSATLNHNEINEIASELLKDPKHVAVGASNIENQDITQKIYLCDHLDHKEA 235

Query: 574 EINLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +    ++G +  +++   T++  + L + L E       +  ++    R +I+     G
Sbjct: 236 LLQSILKRGEQKQVIIFTATRQDTDRLAKKLAEEGFNTASLSGDLNQSARNQIMDQFSRG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             D+LV  ++   GLD+    LV   D  K          +  IGR AR     
Sbjct: 296 MQDILVTTDVASRGLDLLNVSLVINFDMPKF-----AEEYVHRIGRTARAGAKG 344


>gi|72160918|ref|YP_288575.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
 gi|71914650|gb|AAZ54552.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
          Length = 503

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 63/177 (35%), Gaps = 13/177 (7%)

Query: 524 TTIVVSATPGSWELEQCQGII-----VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
            T++ SAT  S  +   +  +     +     P       V     RT   D  + +   
Sbjct: 196 QTMLFSATMPSEIVALSRKYLRRPTHIRAEDDPLDTGSGQVTQHVFRTHPLDKLEMLARL 255

Query: 579 AQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            Q   R   ++   TKR    ++  L  R      +H ++   +R   +R  R GK DVL
Sbjct: 256 LQARNRGLTMVFCQTKRECHHVSTELCRRGFAAAAVHGDLGQGQRERALRAFRNGKVDVL 315

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
           V  ++   G+D+ +   V   +         + +    IGR  R   S   + + D 
Sbjct: 316 VATDVAARGIDVDDVTHVVNYEC-----PDDEKTYTHRIGRTGRAGRSGTAVTFIDW 367


>gi|297842017|ref|XP_002888890.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297334731|gb|EFH65149.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 414

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 82/211 (38%), Gaps = 25/211 (11%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 205 YDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 264

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 265 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 322

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 323 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 377

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHN 715
            V +   T      LA        + Q  +N
Sbjct: 378 GVAINFMTTEDERMLA--------DIQRFYN 400


>gi|148271949|ref|YP_001221510.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147829879|emb|CAN00803.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 403

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 78/223 (34%), Gaps = 24/223 (10%)

Query: 496 TLAEYGFRLPSCM-------DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
            + + GF  P          D + L F         T+V    P     E          
Sbjct: 179 HMCDLGFLEPVQRILRQVKKDGQRLLFSATLDKGVATLVNEFLPNPSVHEVAGEDQASST 238

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           I    L+   +E R       D    I   +    + L+   T+  AE L + L +  I 
Sbjct: 239 IDHRVLL---IEQR-------DKAAIIEQLSSGEGKTLIFARTRAFAEQLADQLEDAGIP 288

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H ++    R   ++ L  GK  VLV  ++   G+ + + GLV   DA  E      
Sbjct: 289 ATSLHGDLNQARRTRNLQLLTSGKVRVLVATDVAARGIHVDDIGLVIQADAPDE-----Y 343

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
            S +   GR  R      ++    ITK+ +  +D+   R E +
Sbjct: 344 KSYLHRAGRTGRAGKQGTVVTL--ITKARRRRMDDLLGRAEIK 384


>gi|118590800|ref|ZP_01548201.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
 gi|118436776|gb|EAV43416.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
          Length = 436

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 14/171 (8%)

Query: 522 RPTTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE----IRSARTQVEDVYDE 574
           +  T++ SAT      EL Q      E++ + P G     V          ++ + + D+
Sbjct: 180 KRQTLLFSATMPKQINELAQSYLRNPERVEVAPAGKTADKVTQSVHFMDKNSKGDFLVDQ 239

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +    +     L+   TK  AE L   L    I    +H      +R   I++LR G  +
Sbjct: 240 L--RDKPDGLSLVFCRTKHGAERLMRKLSHSGISAGSIHGNKSQNQRDRAIKELREGTIN 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           VLV  ++   G+DIP    V   +           + +  IGR AR     
Sbjct: 298 VLVATDVAARGIDIPGVSHVYNFE-----LPEVAEAYVHRIGRTARAGAEG 343


>gi|117918867|ref|YP_868059.1| ATP-dependent RNA helicase RhlB [Shewanella sp. ANA-3]
 gi|189040046|sp|A0KS84|RHLB_SHESA RecName: Full=ATP-dependent RNA helicase rhlB
 gi|117611199|gb|ABK46653.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 439

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 76/231 (32%), Gaps = 36/231 (15%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLR 522
            +D     I  + G+          + + GF         R+PS      + F     ++
Sbjct: 145 IIDYVRQGIINLGGIQAVVLDEADRMFDLGFIKDIRFLFRRMPSADQRLNMLFSATLSMK 204

Query: 523 PTTIVVS--ATPGSWEL---EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
              +       P   E+   E+    I E+I  P+                ED    +  
Sbjct: 205 VQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQ---------------EDKMRLLLT 249

Query: 578 AAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             ++    + ++   TK   E+L  +L     RV  +  +V   +RI I+     G+ D+
Sbjct: 250 LIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDI 309

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LV  ++   GL I +   V   D             +  IGR  R  N  V
Sbjct: 310 LVATDVAARGLHISDVSHVYNYD-----LPDDCEDYVHRIGRTGRAGNKGV 355


>gi|281202418|gb|EFA76621.1| ATP-dependent RNA helicase [Polysphondylium pallidum PN500]
          Length = 637

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 86/244 (35%), Gaps = 22/244 (9%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
            L VDE+        G    D   K  L    +RL     N P      +     +++ S
Sbjct: 394 YLVVDEADSMFTDGKGF---DEDMKKILTPIEYRL--MNKNIP------DYKNIYSVICS 442

Query: 530 ATPGSWELE--QCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEI--NLAAQQGLR 584
           AT     +   +     + +I  P        +E +    +  D ++ +  ++   +  +
Sbjct: 443 ATLTQQLMSTIKSLFPSISKISTPYIHKSLNTLEQQFITVKGGDKHEALLRSVTPSKSKK 502

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           IL+   +         +L E    V  +H ++ +  R    ++  +G+  +LV  ++   
Sbjct: 503 ILIFCNSPDSCRSTEHFLNENGFSVTSLHGDIPSRLRQSNWKEFSMGEKQILVCTDIASR 562

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-SIQLAIDE 703
           G+DI     V + D     F  +    +  IGR AR     V+          +  AI E
Sbjct: 563 GIDIKSVEHVILFD-----FPSNPIDYLHRIGRTARAGQRGVVTSIIGKKDLVLSNAIQE 617

Query: 704 TTRR 707
             +R
Sbjct: 618 ALKR 621


>gi|294947712|ref|XP_002785456.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
 gi|239899367|gb|EER17252.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
          Length = 695

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 78/217 (35%), Gaps = 38/217 (17%)

Query: 491 FHRKATLAEYGFR-----------LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           F     + + GF            +PS  D R             + + SAT    E++Q
Sbjct: 369 FDEADRMLDMGFEPQIRRIVEQEDMPSSRDGR------------QSAMFSAT-FPREIQQ 415

Query: 540 CQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT 591
                ++  I           G +   +      +++ D+Y  +    ++GL  L+ V T
Sbjct: 416 LARDFLKDYIYLTVGRVGSTHGSIKQIMRYVDENSKLRDLYRVLEEQTEEGL-TLVFVET 474

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
           KR A+++   L         +H +    ER E ++  + G+  +LV  ++   GLDI   
Sbjct: 475 KRKADEIENMLRRDRYPATSIHGDRSQWEREEALKAFKSGELPILVATDVAARGLDISHV 534

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            LV   D        +    +  IGR  R  N    +
Sbjct: 535 NLVINYD-----LPNNIDDYVHRIGRTGRAGNLGTAI 566


>gi|254572872|ref|XP_002493545.1| ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase [Pichia
           pastoris GS115]
 gi|238033344|emb|CAY71366.1| ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase [Pichia
           pastoris GS115]
 gi|328354630|emb|CCA41027.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435]
          Length = 606

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 5/104 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TKRMA+ L+ +L  RN     +H +    ER   +   + G   +LV   +   
Sbjct: 402 TLIFVETKRMADTLSHFLVTRNFPATSIHGDRTQQEREHALHLFKSGAAPILVATAVAAR 461

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GLDIP    V   D             +  IGR  R  N  +  
Sbjct: 462 GLDIPNVTHVVNYD-----LPADIDDYVHRIGRTGRAGNVGIAT 500


>gi|226365506|ref|YP_002783289.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4]
 gi|226243996|dbj|BAH54344.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4]
          Length = 587

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 71/187 (37%), Gaps = 22/187 (11%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  EDL E L  R      ++ ++   +R   I  L+ G  D+LV  ++   
Sbjct: 253 MIIFVRTKQATEDLAERLRSRGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDVAAR 312

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   +L+     + +  AI++
Sbjct: 313 GLDVDRISHVVNYD-----IPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIEK 367

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
            TR                Q + E  +  +D +  +  +    SI     S +    +  
Sbjct: 368 ATR----------------QPLAEMQLPSVDDVNAQRVSKFGDSITESLTSDNLALFRKM 411

Query: 764 LKSLRKQ 770
           ++   ++
Sbjct: 412 IEDYEQE 418


>gi|195553569|ref|XP_002076688.1| GD11942 [Drosophila simulans]
 gi|194202067|gb|EDX15643.1| GD11942 [Drosophila simulans]
          Length = 481

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 77/188 (40%), Gaps = 11/188 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QIIRPT-------GLVDPPVEIRSARTQVEDVYDEI 575
             +  SAT G   ++  + I+ +  IIR          +    V+ ++   +  +    I
Sbjct: 271 QMLFFSATYGKEVMDFARLIVADPTIIRLMREEESLENIKQYYVKCKNEEGK-YNAIQNI 329

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G   ++   T+R A  L   +      V  +  ++  ++R++++   R G   V
Sbjct: 330 YGCISVGQ-AIIFCHTRRTAAWLAAKMTSDGHSVAVLTGDLTVVQRLDVLDRFRSGLEKV 388

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKT-SLIQTIGRAARNVNSKVILYADTIT 694
           L+  N+L  G+DI +  +V   D   +   ++   + +  IGR  R   S + +   T  
Sbjct: 389 LITTNILSRGIDIEQVTIVVNFDLPVDVDGKADCETYLHRIGRTGRFGKSGIAINLITDE 448

Query: 695 KSIQLAID 702
           K++++  D
Sbjct: 449 KTMKVCSD 456


>gi|169851879|ref|XP_001832628.1| ATP-dependent RNA helicase dhh1 [Coprinopsis cinerea okayama7#130]
 gi|116506276|gb|EAU89171.1| ATP-dependent RNA helicase dhh1 [Coprinopsis cinerea okayama7#130]
          Length = 509

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 68/197 (34%), Gaps = 22/197 (11%)

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
             +E+   + + +  + +    V+   ++           + +    Q    I +   + 
Sbjct: 239 SPYEINLMEELTLRGVTQYYAYVEERQKVH--------CLNTLFSKLQINQSI-IFCNST 289

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
              E L + + E      Y H+++    R  +  D R G    LV  +LL  G+DI    
Sbjct: 290 NRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVN 349

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           +V   D     F ++  + +  IGR+ R  +  + +   T      L   E     E Q 
Sbjct: 350 VVINFD-----FPKNSETYLHRIGRSGRFGHLGLAINLVTYEDRFNLYKIEQELGTEIQ- 403

Query: 713 EHNKKHNINPQSVKEKI 729
                    PQS+   +
Sbjct: 404 -------PIPQSIDRSL 413


>gi|115533224|ref|NP_001041134.1| hypothetical protein F58E10.3 [Caenorhabditis elegans]
 gi|3877954|emb|CAB04518.1| C. elegans protein F58E10.3a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 561

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 66/162 (40%), Gaps = 14/162 (8%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++         +E  + + ++ ++ + I    +   + ++ V TKR A+
Sbjct: 340 LELAANHNITQVV-------DILEEHAKQAKLMELLNHIMNQKEC--KTIIFVETKRKAD 390

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +LT  +         +H +    ER  ++++ + GK  +++  ++   GLD+ +   V  
Sbjct: 391 ELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDDIKFVIN 450

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            D     +  +    +  IGR  R+          T T + +
Sbjct: 451 YD-----YPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASK 487


>gi|311109370|ref|YP_003982223.1| DEAD/DEAH box helicase family protein [Achromobacter xylosoxidans
           A8]
 gi|310764059|gb|ADP19508.1| DEAD/DEAH box helicase family protein [Achromobacter xylosoxidans
           A8]
          Length = 590

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 15/143 (10%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR A+DL + L ++      +H ++   +R   +  L+ G+  +LV  ++  
Sbjct: 247 QAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLSQLQRGQLRILVATDVAA 306

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            G+D+         D             +  IGR  R   S +     T           
Sbjct: 307 RGIDVQGISHAVNFD-----LPMQAEDYVHRIGRTGRAGRSGLAFTLAT----------H 351

Query: 704 TTRRREKQLEHNKKHNINPQSVK 726
           + R + +++EH    +I P+ + 
Sbjct: 352 SERHKVRRIEHYIGQSITPEVIA 374


>gi|308493749|ref|XP_003109064.1| hypothetical protein CRE_11850 [Caenorhabditis remanei]
 gi|308247621|gb|EFO91573.1| hypothetical protein CRE_11850 [Caenorhabditis remanei]
          Length = 519

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 15/171 (8%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           +      I+  A  GS +L  C+ +    + I      +   EI           + +N 
Sbjct: 301 DRYTKQAIM--AVNGSLDLTSCKSVTQHFEFIPHENRFERVCEI----------VNFLNN 348

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A     ++++ V +K MA+ L+     + I  + +H      +R   ++ LR G+  +LV
Sbjct: 349 AHGNSYKMIIFVKSKVMADHLSSEFCMKGINSQGLHGGRSQSDRELSLKMLRTGEVQILV 408

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             +L   G+D+P+   V   D   +  +      +   GRA R   S   +
Sbjct: 409 ATDLASRGIDVPDITHVLNYDFPMD--IEEYVHRVGRTGRAGRKGESMSFM 457


>gi|215428688|ref|ZP_03426607.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T92]
          Length = 280

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   +  A  +G   ++   TKR A+ + + L ER   V  +H ++  L R + ++  R
Sbjct: 108 ELVSRVLQARDRG-ATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFR 166

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G  DVLV  ++   G+DI +   V             +   +  IGR  R   + V + 
Sbjct: 167 TGGIDVLVATDVAARGIDIDDVTHVINYQC-----PEDEKMYVHRIGRTGRAGRTGVAVT 221

Query: 689 YADTITKSIQLAIDE 703
             D         ID+
Sbjct: 222 LVDWDELPRWSMIDQ 236


>gi|170718552|ref|YP_001783396.1| ATP-dependent RNA helicase RhlB [Haemophilus somnus 2336]
 gi|189040032|sp|B0UUZ9|RHLB_HAES2 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|168826681|gb|ACA32052.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336]
          Length = 419

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 88/251 (35%), Gaps = 32/251 (12%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +D   V +         +  R   L   GF        R +R+    C 
Sbjct: 144 IDYV-KQGIIRLDYIQVVV-------LDEADRMFDL---GFI-------RDIRYLLRKCP 185

Query: 522 RPT---TIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSAR----TQVEDVYD 573
            P    T++ SAT      E     + + Q +    L      IR        Q +    
Sbjct: 186 VPQQRLTMLFSATLSYKVRELAFEHMNDPQYVEIEPLQKTGHRIREELFYPSNQDKMALL 245

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
              L  +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G  
Sbjct: 246 MTLLEEEWPERCIIFSNTKHRCEEIWGYLSADGHRVGLLTGDVMQKKRLSLLKQFTDGTL 305

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
           DVLV  ++   GL IP+   V   D             +  IGR  R   S + I +A  
Sbjct: 306 DVLVATDVAARGLHIPDVTHVFNYD-----LPDDCEDYVHRIGRTGRAGESGISISFACE 360

Query: 693 ITKSIQLAIDE 703
                  AI+E
Sbjct: 361 EYAINLPAIEE 371


>gi|330930035|ref|XP_003302864.1| hypothetical protein PTT_14848 [Pyrenophora teres f. teres 0-1]
 gi|311321492|gb|EFQ89040.1| hypothetical protein PTT_14848 [Pyrenophora teres f. teres 0-1]
          Length = 601

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 70/189 (37%), Gaps = 19/189 (10%)

Query: 521 LRPTTIVVSAT--PGSWELEQCQGIIVEQI---------IRPTGLVDPPVEI---RSART 566
            +  T++ +AT  P   +L         +I         +R    +   VE+   R    
Sbjct: 362 KKRQTLMFTATWPPSVRDLASTFMNSPVKITIGDNQSGELRANVRIKQVVEVVDPRDKEQ 421

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           ++  +  +      +  RIL+  L K+ A  +  ++  +  RV  +H ++   +R   + 
Sbjct: 422 RLLQLLKQYQSGKNKDDRILVFCLYKKEAVRIENFIRMKGFRVGGIHGDLSQEKRSASLA 481

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             + G   +LV  ++   GLDIP   +V  +      F  +    +  IGR  R     +
Sbjct: 482 AFKEGHVPLLVATDVAARGLDIPAVKVVINV-----TFPLTAEDYVHRIGRTGRAGKEGL 536

Query: 687 ILYADTITK 695
            +   T   
Sbjct: 537 AITLFTDHD 545


>gi|259906863|ref|YP_002647219.1| ATP-dependent RNA helicase RhlB [Erwinia pyrifoliae Ep1/96]
 gi|224962485|emb|CAX53940.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283476655|emb|CAY72483.1| putative ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163]
 gi|310766111|gb|ADP11061.1| ATP-dependent RNA helicase RhlB [Erwinia sp. Ejp617]
          Length = 430

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 89/258 (34%), Gaps = 44/258 (17%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNR 511
           L +Y          ++HV +  I  +   +  R   L   GF         R+P+     
Sbjct: 145 LIDY--------AKQNHVNLGAIQVVVLDEADRMFDL---GFIKDIRWLFRRMPAANQRL 193

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELE-----QCQGIIVEQIIRPTGLVDPPVEIRSART 566
            + F      R   +       +  +E     +    I E++  P+       ++R  +T
Sbjct: 194 NMLFSATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELFYPSNEE----KMRLLQT 249

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            +E+         +   R ++   TK   ED+  +L     RV  +  +V   +R+ I+ 
Sbjct: 250 LIEE---------EWPDRTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD 300

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSK 685
           D   G  D+LV  ++   GL IP    V   D         +   +  IGR  R   N  
Sbjct: 301 DFTKGDVDILVATDVAARGLHIPAVTHVFNYD-----LPDDREDYVHRIGRTGRAGANGH 355

Query: 686 VILYADTITKSIQLAIDE 703
            I  A         AI+E
Sbjct: 356 SISLACEEYALNLPAIEE 373


>gi|224286258|gb|ACN40838.1| unknown [Picea sitchensis]
          Length = 411

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L       V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 202 YDIFQLLPTNLQVGVFSATMPPEALEITRKFMTNPVRILVKRDELTLEGIKQFYVNVERE 261

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ + T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 262 DWKLDTLCDLYETLAIT--QSVIFINTRRKVDWLTDQMRARDHTVSATHGDMDQNTRDII 319

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 320 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 374

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 375 GVAINFVTKDDERMLQDIQR 394


>gi|52425891|ref|YP_089028.1| ATP-dependent RNA helicase RhlB [Mannheimia succiniciproducens
           MBEL55E]
 gi|61214859|sp|Q65RG7|RHLB_MANSM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|52307943|gb|AAU38443.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 417

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 90/240 (37%), Gaps = 22/240 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           +V ++ + +  I  +   +  R   L   GF      D R L  +  +  +  T++ SAT
Sbjct: 144 YVKQNIIALSHIQVVVLDEADRMFDL---GFI----KDIRYLMRKCPSPKQRLTLLFSAT 196

Query: 532 PGSWELEQCQGIIVE------QIIRPTG-LVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
                 E     + +      + ++ TG  +   +   S   ++  +   +    +   R
Sbjct: 197 LSYKVRELAFEDMNDPEYVEVEPLQKTGHRIKEELFYPSNEDKMPLLITLLEE--EWPER 254

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TK   E +  YL     RV  +  +V   +R+ +++    G  D+LV  ++   
Sbjct: 255 CIIFANTKHQCEKIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGALDILVATDVAAR 314

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           GL IP+   V   D         +   +  IGR  R   S V I +A         AI+E
Sbjct: 315 GLHIPDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAIEE 369


>gi|326673881|ref|XP_003200020.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like, partial
           [Danio rerio]
          Length = 477

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 17/212 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      ++    F  +   R  T++ SAT         +  +V+ I    G  
Sbjct: 203 RMIDMGFE-----EDIRTIFSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPITINVGRA 256

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 257 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 315

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   + GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 316 AIHGGKDQEERTKAIEAFKEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEE-----IEN 370

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            +  IGR  R+  + +            + +D
Sbjct: 371 YVHRIGRTGRSGKTGIATTFINKGCDESVLMD 402


>gi|326523907|dbj|BAJ96964.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 205 YDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE 264

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 265 EWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDII 322

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 323 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 377

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 378 GVAINFVTREDERMLFDI 395


>gi|225028959|ref|ZP_03718151.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
 gi|224953734|gb|EEG34943.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
          Length = 529

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 95/251 (37%), Gaps = 35/251 (13%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVE--QIIRP----TGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT P    EL +      E  ++IR       +     E+R  + + E +   +
Sbjct: 180 QTMLFSATMPKPIMELARAYQQNPEIIKVIRKELTVPNITQYYYEVRP-KNKSEVLSRLL 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++   +    ++   TK+  ++L   L  R      +H ++K   R  ++   R GK D+
Sbjct: 239 DIYDPK--LSVVFCNTKKGVDELVADLKGRGYFAEGLHGDMKQTMRDRVMHRFRSGKTDI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD---- 691
           LV  ++   G+D+ +   V   D       + +   +  IGR  R   + +         
Sbjct: 297 LVATDVAARGIDVDDVDAVFNYD-----LPQDEEYYVHRIGRTGRAGRTGMAFSFVVGRE 351

Query: 692 -----TITKSIQLAI---------DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
                 I +  +  I         D T  R EK  +    H I  Q++ + I  V + + 
Sbjct: 352 VYKLKDIRRYCKAKIKAQPIPSLNDVTETRVEKIFDR-IDHYIEDQNLNKYIDMVEEFVN 410

Query: 738 LEDAATTNISI 748
            +D    +++ 
Sbjct: 411 EKDYTAMDVAA 421


>gi|224064557|ref|XP_002301515.1| predicted protein [Populus trichocarpa]
 gi|222843241|gb|EEE80788.1| predicted protein [Populus trichocarpa]
          Length = 807

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 77/187 (41%), Gaps = 14/187 (7%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYDEI 575
            T++ SAT P   E      L     + V ++ R    +   V++  +   ++  + +++
Sbjct: 405 QTLLFSATMPRKIEKLAREILTDPVRVTVGEVGRANEDITQVVQVIPSDAEKLPWLIEKL 464

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                +G  +L+    K   +D+   L ++  +V  +H +     R+EI++  + G + V
Sbjct: 465 PGMIDEGD-VLVFASKKATVDDIESQLAQKAFKVAALHGDKDQASRMEILQKFKSGVYHV 523

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI     V   D  +E  +      +  IGR  R  +   I Y     K
Sbjct: 524 LVATDVAARGLDIKSIKSVVNFDIAREMDVH-----VHRIGRTGRAGDKDGIAYTLITQK 578

Query: 696 SIQLAID 702
             + A +
Sbjct: 579 EARFAGE 585


>gi|164425692|ref|XP_960011.2| hypothetical protein NCU06149 [Neurospora crassa OR74A]
 gi|161789041|sp|Q7S5D9|DHH1_NEUCR RecName: Full=ATP-dependent RNA helicase dhh-1
 gi|157071024|gb|EAA30775.2| hypothetical protein NCU06149 [Neurospora crassa OR74A]
          Length = 505

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 76/227 (33%), Gaps = 37/227 (16%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           +++      ++ SAT                +E+     + +  I +    V+   ++  
Sbjct: 213 QFHPKDRQVMLFSATFPLSVKDFSDKNMTSPYEINLMDELTLRGITQYYAFVEEKQKVH- 271

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+++    R  
Sbjct: 272 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNR 323

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 324 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRYGH 378

Query: 684 SK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
               I   +   +     I+      E Q          PQ++ + +
Sbjct: 379 LGLAINLINWDDRFNLYNIERDL-GTEIQ--------PIPQTIDKSL 416


>gi|156932881|ref|YP_001436797.1| ATP-dependent RNA helicase SrmB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531135|gb|ABU75961.1| hypothetical protein ESA_00682 [Cronobacter sakazakii ATCC BAA-894]
          Length = 444

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 78/233 (33%), Gaps = 36/233 (15%)

Query: 470 LLFVDESHVTI-----PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
            L +DE+   +       I  +      RK TL      L S         +    L   
Sbjct: 153 TLILDEADRMLDMGFAQDIETIAGETRWRKQTL------LFSATLEGDAIKDFAERLLEE 206

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL- 583
            + VSATP + E ++                            +E     +    +Q   
Sbjct: 207 PVEVSATPSTRERKKIHQWYYRA------------------DNIEHKTALLVHLLKQPEA 248

Query: 584 -RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++ V  +    +L  +L E  I   Y+  E+  ++R E I+ L  G+ +VL+  ++ 
Sbjct: 249 TRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQVKRNEAIKRLTDGRVNVLIATDVA 308

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             G+DIP+   V   D  +     +  + +  IGR  R       +       
Sbjct: 309 ARGIDIPDVSHVFNYDMPR-----TADTYLHRIGRTGRAGRKGTAISLVEAHD 356


>gi|66767801|ref|YP_242563.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188990915|ref|YP_001902925.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv.
           campestris str. B100]
 gi|66573133|gb|AAY48543.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167732675|emb|CAP50869.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv.
           campestris]
          Length = 642

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     K +  AI+ 
Sbjct: 311 GLDVERVSHVLNYD-----IPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRAIER 365

Query: 704 TTRR 707
            TR+
Sbjct: 366 ATRQ 369


>gi|313213750|emb|CBY40630.1| unnamed protein product [Oikopleura dioica]
          Length = 416

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 61/167 (36%), Gaps = 10/167 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV---DPPVEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT            +   I    G V      +  R    Q  +   ++    +
Sbjct: 147 QTLMFSATFPKQIQALASDFLENYIFLAVGRVGSTSANITQRFEYVQETEKVRKLCELLE 206

Query: 581 QGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            G     ++   TK+ A+ L  +L+ER  +   +H +    ER E +   + G+  +LV 
Sbjct: 207 NGQEMLTIVFTETKKGADYLDHFLHERGYQSTCIHGDRNQQEREEAVHLFKSGQTPILVA 266

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             +   GLDIP    V   D   E         +  IGR  R  N+ 
Sbjct: 267 TAVAARGLDIPNVRHVINFDLPSE-----IDEYVHRIGRTGRAGNTG 308


>gi|307566011|ref|ZP_07628469.1| putative ATP-dependent RNA helicase RhlE [Prevotella amnii CRIS
           21A-A]
 gi|307345199|gb|EFN90578.1| putative ATP-dependent RNA helicase RhlE [Prevotella amnii CRIS
           21A-A]
          Length = 567

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 18/192 (9%)

Query: 524 TTIVVSAT-PGSWE-LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            TI+ SAT P   E L +      E I          ++  +           I    + 
Sbjct: 183 QTIMFSATMPNKIESLAKSLLKNAEIIKLAVSKPAEKIQQSAYICYETQKIGIIKEIFKS 242

Query: 582 GL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G   R+++   +K+  + +T  L ++NI+   MHS++   +R +++   +  + DVLV  
Sbjct: 243 GNLKRVIIFSGSKQKVKKITASLNKQNIKCGEMHSDLDQAQRDDVMFKFKSSQIDVLVAT 302

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR---------NVNSKVILYA 690
           +++  G+DI +  +V   D   +         +  IGR AR          V+ + I Y 
Sbjct: 303 DIVARGIDIDDIAMVINYDVPHDV-----EDYVHRIGRTARADREGNAITFVSEEDIYYF 357

Query: 691 DTITKSIQLAID 702
             I   ++  ID
Sbjct: 358 RHIESFLKKTID 369


>gi|281346401|gb|EFB21985.1| hypothetical protein PANDA_014345 [Ailuropoda melanoleuca]
          Length = 524

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 8/128 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H++    +R   +   R GK
Sbjct: 402 MRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGK 461

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  +  K + +  
Sbjct: 462 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGHKGKAVTFFT 516

Query: 692 TITKSIQL 699
              K +  
Sbjct: 517 EDDKPLLR 524


>gi|167752757|ref|ZP_02424884.1| hypothetical protein ALIPUT_01018 [Alistipes putredinis DSM 17216]
 gi|167659826|gb|EDS03956.1| hypothetical protein ALIPUT_01018 [Alistipes putredinis DSM 17216]
          Length = 393

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 69/186 (37%), Gaps = 27/186 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA----- 578
            T+  SAT  +  +   + ++ + +          VE+    + V+ +   +        
Sbjct: 201 QTLFFSATMPADIVALSKSMLTDPV---------RVEVTPVASAVDAIDQRVYFVEKPEK 251

Query: 579 --------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                    ++   +L+   TK  A++++  L +  IR   +H       R  ++ D + 
Sbjct: 252 KKLLVSLLREEDKSVLVFSRTKHGADNISRLLSKSGIRSEAIHGNKSQNHRQRVLTDFKS 311

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           GK  V+V  ++   G+DI E  +V   D           + +  IGR  R  +S   L  
Sbjct: 312 GKIRVMVATDIAARGIDIRELEIVINYD-----LPDVPETYVHRIGRTGRAGHSGTALTF 366

Query: 691 DTITKS 696
            T  + 
Sbjct: 367 CTPDER 372


>gi|116191655|ref|XP_001221640.1| hypothetical protein CHGG_05545 [Chaetomium globosum CBS 148.51]
 gi|118575171|sp|Q2H720|DBP2_CHAGB RecName: Full=ATP-dependent RNA helicase DBP2
 gi|88181458|gb|EAQ88926.1| hypothetical protein CHGG_05545 [Chaetomium globosum CBS 148.51]
          Length = 562

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 23/211 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVY--- 572
            T + SAT            + + I    G +D          VE+ +   + + +    
Sbjct: 316 QTCMWSATWPKEVRALASDFLTDFIQVNIGSMDLAANHRITQVVEVVNESEKRDKMIKHL 375

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I    +   +IL+   TKR+A+++T +L +       +H + +  ER  ++   + GK
Sbjct: 376 EKIMEDKESQNKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGK 435

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             ++V  ++   G+D+     V   D     +  +    I  IGR  R       +   T
Sbjct: 436 SPIMVATDVASRGIDVRNITHVLNYD-----YPNNSEDYIHRIGRTGRAGAKGTAITFFT 490

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
              S Q        R    +    K +I+P+
Sbjct: 491 TDNSKQA-------RDLVGVLQEAKQHIDPR 514


>gi|82539875|ref|XP_724294.1| DEAD/DEAH box helicase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478891|gb|EAA15859.1| DEAD/DEAH box helicase, putative [Plasmodium yoelii yoelii]
          Length = 715

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 91/283 (32%), Gaps = 41/283 (14%)

Query: 419 AQRLEQRITYDLE-MLETTGSCQSIENYSRYLTGRNPGE-----PPPTLFEYIPEDSLLF 472
            Q L +   ++ E  L+       +  Y + +     G       P  L +Y+ E+ ++ 
Sbjct: 414 MQVLNEIKNFESELNLKAVAVYGGVPKYFQ-INNIKKGADIIVATPGRLLDYL-ENGII- 470

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGF------RLPSCMDNRPLRF--EEWNCLRPT 524
                     +             L + GF       +     N+ L F    W      
Sbjct: 471 ---------NLLRCIYVVIDEADRLLDMGFEKQLRKIMTQINKNKQLLFLTATWPEQVRK 521

Query: 525 TIV--VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
                 S  P   ++ + +    + I            I S+   ++    +      + 
Sbjct: 522 LAYDFCSFDPVKIQIGKSELTANKNI--------EQQVIVSSSIDLKKKLLDWLKDNYEN 573

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            +IL+   TKR  ++L + L         +H + +  ER  I+ + +  + ++LV  ++ 
Sbjct: 574 NKILIFCDTKRNCDNLCKELRYHQYNSLSIHGDKQQRERDRILNNYKNDRCNILVATDVA 633

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             GLDI    +V   D        +    I  IGR  R  N  
Sbjct: 634 SRGLDIKNISIVINYD-----IPNTIEDYIHRIGRTGRAGNKG 671


>gi|321260827|ref|XP_003195133.1| ATP dependent RNA helicase [Cryptococcus gattii WM276]
 gi|317461606|gb|ADV23346.1| ATP dependent RNA helicase, putative [Cryptococcus gattii WM276]
          Length = 617

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 66/193 (34%), Gaps = 19/193 (9%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V +   AE+L + L    I+V  +H      +R E I D R+G   +LV   +L  G
Sbjct: 423 LIFVQSIERAEELYKTLVLDGIKVDAVHGGKAKTKRDEAIEDFRMGTVWMLVVTEVLARG 482

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDET 704
           +D     +V   D     F ++  S I  IGR  R     K I + +         I   
Sbjct: 483 MDFRGVKVVINYD-----FPQTVPSYIHRIGRTGRAGRPGKAITFFNIEDGPYLRTIANV 537

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
            R                  V E ++++  P   E           + +    +      
Sbjct: 538 LRSSGC-------------PVPEYMLDMKKPTKNEKKKLAKAPPKRKAVGGGGRDLNREA 584

Query: 765 KSLRKQMHLAADN 777
              +KQM  A+  
Sbjct: 585 GKKKKQMVEASKK 597


>gi|296813451|ref|XP_002847063.1| ATP-dependent RNA helicase DBP2 [Arthroderma otae CBS 113480]
 gi|238842319|gb|EEQ31981.1| ATP-dependent RNA helicase DBP2 [Arthroderma otae CBS 113480]
          Length = 417

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 82/209 (39%), Gaps = 21/209 (10%)

Query: 524 TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T + SAT           +  +  Q  I  Q +     +   VE+ S   + + +   +
Sbjct: 169 QTCMWSATWPKDVRQLANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIKHL 228

Query: 576 NLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               + +  ++L+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  
Sbjct: 229 ERIMEDKKSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQSERDWVLNEFKSGKSP 288

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           ++V  ++   G+D+ +   V   D     +  +    +  IGR  R   +   +   T  
Sbjct: 289 IMVATDVASRGIDVRDITHVLNHD-----YPNNSEDYVHRIGRTGRAGANGTAITMFTTE 343

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            + Q        R   ++    K  I+P+
Sbjct: 344 NAKQA-------RDLVKILTESKQQIDPR 365


>gi|4454799|gb|AAD20980.1| translation initiation factor 4A2 [Zea mays]
          Length = 215

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 80/202 (39%), Gaps = 18/202 (8%)

Query: 511 RPLRFEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVE 560
           R   ++ +  L  +    V SAT  P + E+ +       +I+         G+    V 
Sbjct: 2   RDQIYDIFQLLPAKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVN 61

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +     +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    
Sbjct: 62  VDKEDWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNT 119

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  I+R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R
Sbjct: 120 RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGR 174

Query: 681 NVNSKV-ILYADTITKSIQLAI 701
                V I +     + +   I
Sbjct: 175 FGRKGVAINFVTRDDERMLFDI 196


>gi|32490970|ref|NP_871224.1| hypothetical protein WGLp221 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166176|dbj|BAC24367.1| deaD [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 583

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 97/259 (37%), Gaps = 57/259 (22%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGL 554
            +   GF     ++N  L+    +  +  TI+ SAT P +          + +I +    
Sbjct: 160 EMLRMGFI--EDVENIFLK----SSKQHQTILFSATMPAA----------IHRITKRFMK 203

Query: 555 VDPPVEIRSARTQVEDVYDEIN-----LAAQQGLR---------ILLTVLTKRMAEDLTE 600
               + I+++     ++             +  LR         +++ V TK    ++++
Sbjct: 204 KPKEIRIKASENTRPNIKQNYWIVYGLCKIEALLRFLEVEIFDAVIIFVRTKNATLEVSD 263

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
            L +       ++ ++  + R + +   + G  D+LV  ++   GLD+    LV   D  
Sbjct: 264 VLEKNGYNSSSLNGDMNQILREKTLNRFKTGLLDILVATDVAARGLDVDRISLVINYD-- 321

Query: 661 KEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
                    S I  IGR  R   + K +++ +                RE+++ +N + N
Sbjct: 322 ---IPLDVESYIHRIGRTGRAGRTGKALMFVEN---------------RERKILYNIERN 363

Query: 720 INPQSVKEKIMEVIDPILL 738
           I     KEK+ ++  P + 
Sbjct: 364 I-----KEKLSQIKLPSVE 377


>gi|117926698|ref|YP_867315.1| DEAD/DEAH box helicase [Magnetococcus sp. MC-1]
 gi|117610454|gb|ABK45909.1| DEAD/DEAH box helicase domain protein [Magnetococcus sp. MC-1]
          Length = 572

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V TKR  E +  +L    I+  Y+  +V  ++R+++++  + G++ VL+  ++  
Sbjct: 322 RSMVFVNTKRAGERVERWLKANGIQAGYLSGDVPQMKRLKVLKRFQDGEYPVLIATDVAG 381

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
            GL I     V   D        +    +  IGR AR  N    I   D        A+
Sbjct: 382 RGLHIDGVTHVINYD-----LPDNAEDYVHRIGRTARAGNRGDAIALVDEEGAYSLEAV 435


>gi|330684829|gb|EGG96522.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU121]
          Length = 509

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 79/198 (39%), Gaps = 25/198 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDVYDEINLA---- 578
            T++ SAT     + +    +V+Q ++   ++     E+  +  Q+++ Y  +       
Sbjct: 177 QTMLFSAT-----MPKAIQTLVQQFMKTPKIIKTMNNEM--SDPQIDEYYTIVKELEKFD 229

Query: 579 -------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                    Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  
Sbjct: 230 TFTNFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKND 289

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
           + D+LV  ++   GLDI     V   D       +   S    IGR  R     + + + 
Sbjct: 290 QIDILVATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFV 344

Query: 691 DTITKSIQLAIDETTRRR 708
           + I       I++   RR
Sbjct: 345 NPIEMDYIRQIEDANNRR 362


>gi|315641802|ref|ZP_07896806.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
 gi|315482477|gb|EFU73016.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
          Length = 522

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 74/192 (38%), Gaps = 13/192 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +        E + I+   +    ++   +RS   +  D+   +  
Sbjct: 176 QTLLFSATMPPAIKSIGVKFMQNPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L   L  R  +   +H ++   +R+ ++R  + G  D+LV
Sbjct: 236 -VQTPELTIIFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R       + +      S
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMS 349

Query: 697 IQLAIDETTRRR 708
               I+  T++R
Sbjct: 350 YLHTIENLTKKR 361


>gi|237713244|ref|ZP_04543725.1| ATP-dependent RNA helicase [Bacteroides sp. D1]
 gi|262406616|ref|ZP_06083165.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646166|ref|ZP_06723822.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294807864|ref|ZP_06766646.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229446711|gb|EEO52502.1| ATP-dependent RNA helicase [Bacteroides sp. D1]
 gi|262355319|gb|EEZ04410.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638495|gb|EFF56857.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294444926|gb|EFG13611.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 420

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R+++   +K   +++ + L    + V  MHS+++  +R  ++ + + G+ ++LV  +++
Sbjct: 245 ERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRINILVATDIV 304

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAI 701
             G+DI +  LV   D             +  IGR AR  N  V + + +   +S   +I
Sbjct: 305 ARGIDIDDIRLVINFDV-----PHDSEDYVHRIGRTARANNDGVALTFINEKEQSNFKSI 359

Query: 702 D 702
           +
Sbjct: 360 E 360


>gi|195952677|ref|YP_002120967.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932289|gb|ACG56989.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 364

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 79/194 (40%), Gaps = 17/194 (8%)

Query: 525 TIVVSAT-PGSWEL-------EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           T + SAT P   EL          + + V+ +     + +  +++ S   ++ ++   I+
Sbjct: 177 TYMFSATVPSRIELLAKRFLKSDFKFVKVQSVELKPNIEEKMIKLSSPGEKIHELMHIID 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  ++L+ V TK+ A+DL   L ++ IR + +H ++   +R + +   + G   +L
Sbjct: 237 THPM--EKMLIFVKTKKDAKDLFFLLTKKGIRAQALHGDLTQRQREKALSAFKSGAVSIL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLDI + G+V   +             I  IGR  R   S           S
Sbjct: 295 IATDVAARGLDIKDVGVVINYN-----IPEDPELYIHRIGRTGRIGKSGKAFSLICPEDS 349

Query: 697 IQLAIDETTRRREK 710
              A+    + R K
Sbjct: 350 --KALWRIKKLRSK 361


>gi|145632266|ref|ZP_01788001.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655]
 gi|144987173|gb|EDJ93703.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655]
          Length = 415

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 90/252 (35%), Gaps = 34/252 (13%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +DE  V +         +  R   L   GF        R +R+    C 
Sbjct: 145 IDYV-KQGVISLDEIQVVV-------LDEADRMFDL---GFI-------RDIRYLLRKCP 186

Query: 522 RPT---TIVVSATPGSWELEQCQGIIVE------QIIRPTGLVDPPVEIRSARTQVEDVY 572
            P    T++ SAT      E     + +      +  + TG      E+     Q +   
Sbjct: 187 VPQSRLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHCIKE-ELFYPSNQDKMAL 245

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               +  +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G 
Sbjct: 246 LLTLMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGD 305

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
            D+LV  ++   GL I +   V   D         +   +  IGR  R   S V I +A 
Sbjct: 306 LDILVATDVAARGLHISDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFAC 360

Query: 692 TITKSIQLAIDE 703
                   AI+E
Sbjct: 361 EEYAMNLPAIEE 372


>gi|292558860|gb|ADE31861.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           suis GZ1]
          Length = 502

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 79/200 (39%), Gaps = 16/200 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ +IRD +  + DVLV 
Sbjct: 224 VDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVA 283

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +   
Sbjct: 284 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGY 338

Query: 699 LAIDE--TTRRRE------KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
           LAI E  T +R +       +     K  +  + ++ ++ +       +      I + A
Sbjct: 339 LAIIEDLTKKRMKGLKPATAEEAFEAKKKVALKKIEREMADETIRNNFDKFKKDAIQLAA 398

Query: 751 QQLSLSKKKGKAHLKSLRKQ 770
           +    + ++   ++ +L  Q
Sbjct: 399 EF---TPEELALYVLTLTVQ 415


>gi|291242221|ref|XP_002741008.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like
           [Saccoglossus kowalevskii]
          Length = 681

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 90/232 (38%), Gaps = 36/232 (15%)

Query: 566 TQVEDVYDEINLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
            Q       I    ++G++  +L+ V +K  A++L   L    I V  +H++    +R  
Sbjct: 398 GQEYGKLLAIRDIIRKGVQPPMLVFVQSKERAKELFLELIYDGINVDVIHADRTQTQRDN 457

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++R  R GK  +L+   L+  G+D     LV   D     F  S  S I  IGR  R   
Sbjct: 458 VVRSFRAGKIWILICTELMGRGIDFKGVNLVVNYD-----FPSSAVSYIHRIGRTGRAGR 512

Query: 684 SK--VILYADT-------ITKSIQLA----------IDETTRRREKQLEHNKKHNINPQS 724
           +   V  +          I   ++ A          + + +++  KQL  ++      ++
Sbjct: 513 AGRAVTFFTHDDVTNLRSIANVMREAGCPVPDYMLELPKPSKKTRKQLAKHEVKRETIRT 572

Query: 725 V----------KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKS 766
           +          K+K +++I     ED +  N +    ++   +K  +  +K 
Sbjct: 573 LPTDILQRTKRKKKFIKMIKQRRDEDRSVVNENEKKVKIKTRRKSNEKPVKE 624


>gi|288803318|ref|ZP_06408751.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18]
 gi|288334138|gb|EFC72580.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18]
          Length = 553

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 77/198 (38%), Gaps = 38/198 (19%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQIIRPTGLVDPPVEIR-----SARTQVEDVYDEIN 576
            TI+ SAT P    EL +              L+  PVEI+      A  +++       
Sbjct: 165 QTIMFSATMPAKIEELAKT-------------LLKNPVEIKLAVSKPAE-KIQQTAYVCY 210

Query: 577 LAAQQG-----------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
              + G            R+++   +K+  + +   L   +I    MHS++   +R +++
Sbjct: 211 ETQKMGIIKDIFKAGDLKRVIIFSGSKQKVKQIAGSLNRMHINCGEMHSDLDQEQRNDVM 270

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNS 684
              + G+ DVLV  +++  G+DI +  +V   D             +  IGR AR + + 
Sbjct: 271 FKFKSGQIDVLVATDIVSRGIDIDDIAMVINYDV-----PHDAEDYVHRIGRTARADRDG 325

Query: 685 KVILYADTITKSIQLAID 702
           K I + +         I+
Sbjct: 326 KAITFVNEDDIYFFQQIE 343


>gi|312113545|ref|YP_004011141.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218674|gb|ADP70042.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 494

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 63/190 (33%), Gaps = 17/190 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIR------SARTQVEDVYDE 574
            T+  SAT  P   +L        EQ+ +         +  +       ++T+   + + 
Sbjct: 179 QTLFFSATMPPEIQKLTDQFLKNPEQVRVSAPATAAKNITQKLKFSPADSKTKRHVLREL 238

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +          ++    KR    L + L +       +H ++   +R   +   R G+  
Sbjct: 239 MRSEVSTIQNAIIFCNRKRDVAVLHKSLVKHGFNAGALHGDLDQRQRTATLEAFRKGEIT 298

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
            L   ++   GLDIPE   V   D        S    +  IGR  R           T  
Sbjct: 299 YLAASDVAARGLDIPEVSHVFNFDVPI-----SPEDYVHRIGRTGRAGRDGYAAMIVTP- 352

Query: 695 KSIQ--LAID 702
           K ++   AI+
Sbjct: 353 KEMKGVRAIE 362


>gi|260433500|ref|ZP_05787471.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417328|gb|EEX10587.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 476

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 100/331 (30%), Gaps = 60/331 (18%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++     LL       T  QI  +   D      + + GF  P       L   
Sbjct: 130 TPGRLLDHFERGKLLL------TGVQIMVVDEADR-----MLDMGFI-PDIERIFSLTP- 176

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP----TGLVDPPVEI----------- 561
                   T+  SAT    E+E+     +    R            +E            
Sbjct: 177 ----FTRQTLFFSATMAP-EIERITDTFLSAPARIEVARQATASETIEQGVVMIKGGRRD 231

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R   T+ + +   I+    +    ++    K   +   + L +       +H ++    R
Sbjct: 232 REGSTKRKVLRALIDAEGDKCTNAIIFCNRKTDVDITAKSLKKYGYDAAAIHGDLDQSVR 291

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
              +   R G    LV  ++   GLD+P    V   D             +  IGR  R 
Sbjct: 292 TRTLEGFREGSLRFLVASDVAARGLDVPSVSHVFNFDV-----PSHPEDYVHRIGRTGRA 346

Query: 682 V-NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
               K I       +    AI+                    + ++++I  + +P+  E 
Sbjct: 347 GREGKAITLCTARDEKALEAIE--------------------KLIQKEIPRLDNPVEAEP 386

Query: 741 AATTNISIDAQQLSLSKK-KGKAHLKSLRKQ 770
           A   +   + +  + ++K + ++  K  RK 
Sbjct: 387 AEAEDKKPEKKSRASTRKDERESEAKDTRKD 417


>gi|226286755|gb|EEH42268.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 659

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 6/138 (4%)

Query: 568 VEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           V D+     L+     +  L+  +     + LT+      +  RY+ S+ +   R E + 
Sbjct: 285 VNDITVRAWLSRASDRKSTLVFGVDIDHVKCLTDTFRRFGVDARYITSQTRKNLRTEELE 344

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R  ++ VLV   L  EG DIP    V +    +     SK  LIQ IGR  R    K 
Sbjct: 345 AFRNQEYPVLVNCGLFTEGTDIPNIDCVLLARPTR-----SKNLLIQMIGRGLRLHPGKE 399

Query: 687 ILYADTITKSIQLAIDET 704
             +   +  S+   +  T
Sbjct: 400 NCHIIDMVASLNTGVTTT 417



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ------RPAIV 198
           +D+     Q   I  +L  +    K   +   TGSGKT    ++I+ +       +  ++
Sbjct: 54  SDFRLRSYQEECIQSVLSYLKKGHKRLGVSLATGSGKTVIFTQLIDRIPPRDIIAKQTLI 113

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVE 223
           +   K L  Q        +P   +E
Sbjct: 114 IVHRKELVEQAAKHCMRAYPEKTIE 138


>gi|39644658|gb|AAH18637.2| DDX50 protein [Homo sapiens]
          Length = 423

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 39/256 (15%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 6   PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 65

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 66  DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 124

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 125 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 179

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 180 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 226

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 227 AVDFFRPSAQRLIEEK 242


>gi|67458656|ref|YP_246280.1| ATP-dependent RNA helicase RhlE [Rickettsia felis URRWXCal2]
 gi|67004189|gb|AAY61115.1| ATP-dependent RNA helicase RhlE [Rickettsia felis URRWXCal2]
          Length = 353

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 84/232 (36%), Gaps = 16/232 (6%)

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L E    L   M  +     ++   +   ++ SAT     +   Q  +   I    G 
Sbjct: 86  TVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSATMPKHIIAVSQKYLNNPIRITVGA 145

Query: 555 VDPPV-EIRSARTQVEDVYDEINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVR 610
            +    EI+     V D      L  Q G R   +++ V TKR A+ L + L   N +  
Sbjct: 146 TNKAAAEIKQESMHVSDKEKFSELTKQLGNREGSVIIFVKTKRSADQLAKMLKYENHKAE 205

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H ++   +R  +I   R     ++V  ++   GLDIP    V   D            
Sbjct: 206 AIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYD-----LPMCPED 260

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQ-LAID------ETTRRREKQLEHN 715
            +  IGR  R   +   L   +    I+  AID      ETT R E + + N
Sbjct: 261 YLHRIGRTGRAGATGHALSFISPDDVIRWRAIDRLVNKGETTPRSEFRSDKN 312


>gi|332535929|ref|ZP_08411636.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034692|gb|EGI71243.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 422

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 80/209 (38%), Gaps = 35/209 (16%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           +  T++ SAT              EQ+ +    L++ PVEI+  + + E    +      
Sbjct: 192 KKQTMLFSAT------------FPEQVKLLTQELLNDPVEIQ-VQNKDESTLVQRVFTVN 238

Query: 581 QGLR---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +G +               +L+ V  K+  E L   L +R +  +  H +    ER  +I
Sbjct: 239 KGEKTTVLAHLIKTHKWRQVLIFVNAKKDCEHLAAKLEKRGVNAQVFHGDKGQSERTRVI 298

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              + G+ +VL+  ++   GLDI +  +V   +       RS    +  IGR+ R     
Sbjct: 299 EKFKAGEIEVLIATDIAARGLDIEKLPVVINFN-----LPRSPADYMHRIGRSGRAGEVG 353

Query: 686 -VILYADTITKSIQLAIDETTRRREKQLE 713
             +   D         I++  + R ++ E
Sbjct: 354 LALSLVDYEDFHHFKVIEKKNKLRLEREE 382


>gi|318062100|ref|ZP_07980821.1| putative ATP-dependent RNA helicase [Streptomyces sp. SA3_actG]
          Length = 527

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 12/181 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------EDVY 572
           +  T++ SAT PG+      + +     I  T   D    + +    V         ++ 
Sbjct: 147 KRQTMLFSATMPGAVVALARRYMSQPTHINATSPDDENATVANTEQHVFRAHSMDKPEMV 206

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +GL +++   TKR A D++E L  R      +H ++    R + +R  R GK
Sbjct: 207 ARILQAEGRGL-VMIFCRTKRTAADISEQLQRRGFAAGAVHGDLGQGAREQALRAFRNGK 265

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            DVLV  ++   G+D+     V      ++   ++    I   GRA R+  +  ++  D 
Sbjct: 266 VDVLVCTDVAARGIDVEGVTHVINYQTPEDE--KTYLHRIGRTGRAGRSGTAVTLVDWDD 323

Query: 693 I 693
           I
Sbjct: 324 I 324


>gi|302765659|ref|XP_002966250.1| hypothetical protein SELMODRAFT_85554 [Selaginella moellendorffii]
 gi|302801131|ref|XP_002982322.1| hypothetical protein SELMODRAFT_116103 [Selaginella moellendorffii]
 gi|300149914|gb|EFJ16567.1| hypothetical protein SELMODRAFT_116103 [Selaginella moellendorffii]
 gi|300165670|gb|EFJ32277.1| hypothetical protein SELMODRAFT_85554 [Selaginella moellendorffii]
          Length = 411

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 78/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    + SAT  P + E+ +       +I+         G+    V +   
Sbjct: 202 YDIFQLLPSKVQVGLFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVERE 261

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++   T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 262 DWKLDTLCDLYETLAIT--QSVIFCNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 319

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 320 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 374

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 375 GVAINFMVREDERMLHDI 392


>gi|222424799|dbj|BAH20352.1| AT1G54270 [Arabidopsis thaliana]
          Length = 328

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 82/211 (38%), Gaps = 25/211 (11%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 119 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKE 178

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 179 DWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKVRSRDHTVSATHGDMDQNTRDII 236

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 237 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 291

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHN 715
            V +   T+     L         + Q  +N
Sbjct: 292 GVAINFVTLDDQRMLF--------DIQKFYN 314


>gi|58039465|ref|YP_191429.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58001879|gb|AAW60773.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 432

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 74/222 (33%), Gaps = 33/222 (14%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            + + GF  P       L  +        T++ SAT     + +    +VE ++R     
Sbjct: 165 QMLDMGFAKPIERIVATLPEDR------HTVLFSAT-----MPKSIAALVESLLRNP--- 210

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRI--------------LLTVLTKRMAEDLTEY 601
              VEI    + V+ +   +        +               ++  L K +A D+  +
Sbjct: 211 -AKVEIAPPSSTVDRIAQSVMFLNASDKKAALLAQLRTPGIGQAVVFTLQKNIANDVCTF 269

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L E  I    +H      +R   +   R G   VLV  ++   G+D+     V   D   
Sbjct: 270 LTESGITAEALHGNRSQGQRERALNAFREGDVQVLVATDIAARGIDVDTVTHVINHDLPS 329

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
                S    I   GRA R+     I   D   ++   A++ 
Sbjct: 330 --LPESYVHRIGRTGRAGRSG--FAITLCDAEQRAWLHAVER 367


>gi|239982147|ref|ZP_04704671.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 381

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 20/197 (10%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------EDVY 572
           +  T++ SAT PG+      + +     IR T   D    + +    V         ++ 
Sbjct: 100 KRQTMLFSATMPGAVIGLARRYMTQPTHIRATSPDDEGATVANIAQHVFRAHSMDKPELV 159

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +GL  ++   TKR A D+ E L  R      +H ++    R + +R  R GK
Sbjct: 160 SRILQAEGRGL-AMIFCRTKRTAADIAEQLQRRGFASGAVHGDLGQGAREQALRAFRNGK 218

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
            DVLV  ++   G+D+     V             + + +  IGR  R   + + I   D
Sbjct: 219 VDVLVCTDVAARGIDVEGVTHVINYQT-----PEDEKTYLHRIGRTGRAGRAGIAITLVD 273

Query: 692 TITKS----IQLAIDET 704
                    I  A++ T
Sbjct: 274 WDDIPRWQLINKALELT 290


>gi|157964817|ref|YP_001499641.1| ATP-dependent RNA helicase RhlE [Rickettsia massiliae MTU5]
 gi|157844593|gb|ABV85094.1| ATP-dependent RNA helicase RhlE [Rickettsia massiliae MTU5]
          Length = 415

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 75/214 (35%), Gaps = 10/214 (4%)

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L E    L   M  +     ++   +   ++ SAT     +   Q  +   +    G 
Sbjct: 148 TVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSATMPKHIIAVSQKYLNNPVRITVGA 207

Query: 555 VDPPV-EIRSARTQVEDVYDEINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVR 610
            +    EI+     V D      L  Q G R   +++ V TKR A+ L + L   N    
Sbjct: 208 TNKAAAEIKQESMHVSDKEKFSELTKQLGNREGSVIIFVKTKRSADQLAKMLKYENHTAE 267

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H ++   +R  +I   R     ++V  ++   GLDIP    V   D            
Sbjct: 268 AIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYD-----LPMCPED 322

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
            +  IGR  R   +   L   +    I+  AID 
Sbjct: 323 YLHRIGRTGRAGATGYALSFISPDDVIRWHAIDR 356


>gi|307823524|ref|ZP_07653753.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307735509|gb|EFO06357.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 419

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 93/262 (35%), Gaps = 27/262 (10%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         V+++ V + Q+  +   +  R     + GF      D R  +  
Sbjct: 132 TPGRLLD--------LVNQNAVKLDQVETLILDEADRM---LDMGFI----RDIR--KII 174

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYD 573
            +   +   ++ SAT      +   G++V  I   + P       VE  +      +  +
Sbjct: 175 AFLPKKRQNLLFSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQVAYLVNKANKTE 234

Query: 574 EINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +    ++    ++L+   TK  A  LTE L + +I+   +H       R   +   + G
Sbjct: 235 LLCHLIKEHDWQQVLVFTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALSGFKAG 294

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  VLV  ++   G+DI     V   +       R+    +  IGR  R       +   
Sbjct: 295 EIRVLVATDVAARGIDINLLPHVVNFE-----LPRAPEDYVHRIGRTGRAGEEGQAISLV 349

Query: 692 TITKSIQLAIDETTRRREKQLE 713
           +  +   L + E    +E + E
Sbjct: 350 SHDEYSFLRLVEKLIGKEIKRE 371


>gi|256848375|ref|ZP_05553818.1| autoaggregation-mediating protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714973|gb|EEU29951.1| autoaggregation-mediating protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 500

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 91/251 (36%), Gaps = 15/251 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVE---IRSARTQVEDVYDE 574
           +  T++ SAT    E+++     +       I+   L    V+   +R+   +  D+   
Sbjct: 186 KRQTLLFSAT-MPPEIKRIGVQFMRDPQMVKIKAKELTTDLVDQYYVRAKDYEKFDIMTR 244

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +       L  ++   TKR  ++L+  L  R      +H ++    R +I++  + G  D
Sbjct: 245 LIDVQDPDL-TIVFGRTKRRVDELSRGLVARGYNAAGIHGDLTQDRRSKIMKKFKNGDLD 303

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   GLDI     V   D           S +  IGR  R  +  V L   T  
Sbjct: 304 ILVATDVAARGLDISGVTHVYNYD-----IPSDPDSYVHRIGRTGRAGHHGVSLTFVTPN 358

Query: 695 K-SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
           +      I++ TR R   L+   +       V   + ++ D I  E       S +    
Sbjct: 359 EMDYLHEIEKLTRVRMLPLKPPTEEEAFRGQVASAVNDIDDLIKDEATDKYRQSAEKLLA 418

Query: 754 SLSKKKGKAHL 764
           +       A L
Sbjct: 419 THDAVDLVAAL 429


>gi|254491416|ref|ZP_05104595.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224462894|gb|EEF79164.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 402

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
              L+    K  AE+++ +L  +NI  + +H +    +R E  R  R GK   LV  ++ 
Sbjct: 245 ESALIFCNKKERAEEVSAFLQSQNISAQVVHGDFNQADRRERTRKFRQGKVKALVATDVA 304

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             GLD+P+   V   D    G +      I  +GR  R   +   +       
Sbjct: 305 ARGLDLPQVSHVINYDVPFRGDI-----YIHRVGRTGRAGQTGTAVNLVEPHD 352


>gi|221130645|ref|XP_002155556.1| PREDICTED: similar to topoisomerase (DNA) III beta [Hydra
           magnipapillata]
          Length = 1349

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 24/199 (12%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQII----------RPTGLVDPP------VEIRSA 564
            +  T++ SAT    E+ +     + Q +            +GL          + + S 
Sbjct: 282 RKRQTLMFSAT-WPEEVRRLADDFLYQPVHIRLGIVGGSTSSGLQANEMIKQHLILLNSG 340

Query: 565 RTQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
             +  ++ + I     Q    +L+ V  K   + LT  L    I    MH +     R +
Sbjct: 341 EDKDGELINLIKSRFHQNRDLVLIFVARKNTCDFLTNILNRVGIAASAMHGDRDQKYREK 400

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV- 682
            +   R G   ++V  +L   G+D+     V   D        S    +  IGR  R   
Sbjct: 401 TLAAFRDGSRPIMVATDLASRGIDVRGISAVINYD-----LANSTEDYVHRIGRTGRAGM 455

Query: 683 NSKVILYADTITKSIQLAI 701
           + +   +       I  AI
Sbjct: 456 SGESFTFLTRSNDDIWKAI 474


>gi|15791152|ref|NP_280976.1| Hef nuclease [Halobacterium sp. NRC-1]
 gi|169236908|ref|YP_001690108.1| Hef nuclease [Halobacterium salinarum R1]
 gi|10581766|gb|AAG20456.1| ATP-dependent RNA helicase homolog eIF-4A [Halobacterium sp. NRC-1]
 gi|167727974|emb|CAP14762.1| nuclease domain protein / probable ATP-dependent helicase
           [Halobacterium salinarum R1]
          Length = 784

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 16/142 (11%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-------HSEVKTLERIEIIRDLRLG 631
            + G R+++   ++  AE LT +L E     R++          +   E+ E + + R G
Sbjct: 367 IEDGDRVIVFTESRDTAEALTAFLGEHFDTRRFVGQGDADGSDGMTQTEQRETLAEFRNG 426

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YA 690
            F+VLV  ++  EGLD+PE  LV   +      + +    +Q  GR  R    +V++  A
Sbjct: 427 DFEVLVSTSVAEEGLDVPEVDLVLFFEP-----VPTAIRSVQRKGRTGRQTAGRVVVLLA 481

Query: 691 DTITKSIQLAIDETTRRREKQL 712
           +         I   +RRRE+++
Sbjct: 482 EDTRDEAYFWI---SRRREQEM 500


>gi|116193555|ref|XP_001222590.1| hypothetical protein CHGG_06495 [Chaetomium globosum CBS 148.51]
 gi|88182408|gb|EAQ89876.1| hypothetical protein CHGG_06495 [Chaetomium globosum CBS 148.51]
          Length = 602

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 73/202 (36%), Gaps = 22/202 (10%)

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
            +    + +  +  + + + D I        R ++ V +KR AE++ ++L+   +    M
Sbjct: 335 NIKQNVIYVDPSLKK-QALIDLIKSLPPT--RTIIFVNSKRAAEEVDDFLFNLGMPCTSM 391

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H +   LER   +R  R GK+ +L+   +   G+D+     V   D     +        
Sbjct: 392 HGDRNQLEREAAMRGFRGGKWPILIATGVTARGIDVRNVMHVINYDLPSMEYG-GIEEYT 450

Query: 673 QTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
             IGR  R  +      +     + I   +  T           + H        ++I +
Sbjct: 451 HRIGRTGRIGHRGLATSFYSDRDEPIASVLTRTLM---------ETH--------QEIPD 493

Query: 732 VIDPILLEDAATTNISIDAQQL 753
            + P + E A   N+  +A   
Sbjct: 494 FLQPYVPEGATADNLKFEADSD 515


>gi|330804668|ref|XP_003290314.1| hypothetical protein DICPUDRAFT_95112 [Dictyostelium purpureum]
 gi|325079564|gb|EGC33158.1| hypothetical protein DICPUDRAFT_95112 [Dictyostelium purpureum]
          Length = 706

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 64/198 (32%), Gaps = 13/198 (6%)

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
            F +P   D + L F      +   +                 +   ++  T  +   +E
Sbjct: 416 DFDMPGSRDRQTLMFSATFPKQIQALASDFLSNY-------IFLKVGVVGTTQNITQRIE 468

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
             S   +   + D I+     G   L+ V TKR  + LT +L  R      +H ++   E
Sbjct: 469 YVSEEEKNSYLLDYISGLNIDGALTLIFVETKRSCDTLTFFLNNRGFPATCIHGDLTQSE 528

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R   +      +   LV  ++   GL IP   +V   D             +  IGR  R
Sbjct: 529 RENALHSFSSFQTPFLVATDIASRGLHIPNVMVVINYD-----LPTDVHIYVHRIGRTGR 583

Query: 681 NVNSK-VILYADTITKSI 697
                  I + +   K +
Sbjct: 584 AGKKGLSISFFNEKNKPV 601


>gi|325273080|ref|ZP_08139385.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324101781|gb|EGB99322.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 630

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 57/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +        R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D +     VLV  ++   GLDI +   V   +    
Sbjct: 270 EKHGLTAAAIHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                +   +  IGR  R   S   I       + +  +I+  TR+R
Sbjct: 326 -LPNVEEDYVHRIGRTGRAGRSGEAISMVAPDEEKLLKSIERVTRQR 371


>gi|320182099|gb|EFW57003.1| ATP-dependent RNA helicase SrmB [Shigella boydii ATCC 9905]
          Length = 444

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 90/253 (35%), Gaps = 17/253 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT  G    +  + ++ + + +          +I     + +D+  +  L  
Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DIP+   V   D  + G      + +  IGR AR       +      
Sbjct: 301 VLVATDVAARGIDIPDASHVFNFDMPRSG-----DTYLHRIGRTARAGRKGTAISLVEAH 355

Query: 695 KSIQLA-----IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
             + L      I+E  + R       K    + +   +   +V+     +  A       
Sbjct: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPR 415

Query: 750 AQQLSLSKKKGKA 762
            ++     K    
Sbjct: 416 VKKRHRDTKNIGK 428


>gi|315128153|ref|YP_004070156.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315016666|gb|ADT70004.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 432

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 74/198 (37%), Gaps = 34/198 (17%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPT-GLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           +  T++ SAT              EQ+ + T  L+  PVEI+  +++ E    +      
Sbjct: 192 KKQTMLFSAT------------FPEQVTQLTQKLLTNPVEIQ-VQSKDESTLVQRVFTVN 238

Query: 581 QGLRI---------------LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +G +                L+ V  K+  E L   L +R +  +  H +    ER  +I
Sbjct: 239 KGEKTTVLAHLIKQHKWRQALIFVNAKKDCEHLASKLEKRGVNAQVFHGDKGQSERTRVI 298

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              + G+ +VL+  ++   GLDI +  +V   +       RS    +  IGR+ R     
Sbjct: 299 EKFKAGEIEVLIATDIAARGLDIEKLPVVINFN-----LPRSPADYMHRIGRSGRAGEVG 353

Query: 686 VILYADTITKSIQLAIDE 703
           + L            I E
Sbjct: 354 LALSLIDYDDFHHFRIIE 371


>gi|302388261|ref|YP_003824083.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
 gi|302198889|gb|ADL06460.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
           WM1]
          Length = 572

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 103/255 (40%), Gaps = 29/255 (11%)

Query: 524 TTIVVSAT--PGSWELEQC--QGIIVEQIIRP----TGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT  P   E+ +   Q  +  ++++       +     E++  +++VE +   +
Sbjct: 193 QTVMFSATMPPAIMEIARKFQQDPVTVKVVKKELTVPKVTQYYYEVKP-KSKVEVMCRLL 251

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++ A +    +    TK+  ++L + L  R      +H ++K ++R  ++   R GK ++
Sbjct: 252 DMYAPK--LSVAFCNTKKQVDELVQALQGRGYFAEGLHGDLKQIQRDRVMGSFRNGKTEI 309

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+D+ +   V   D       +     +  IGR  R      I ++  + K
Sbjct: 310 LVATDVAARGIDVDDVEAVFNYD-----LPQDDEYYVHRIGRTGRAGREG-IAFSFVVGK 363

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
            +          R+ Q     K  I PQ++   + +V    + +   T   +I    LS 
Sbjct: 364 EVYKL-------RDIQ--RYCKTKIVPQAIP-SLNDVTAIKVDKILETVADTIGDTDLSK 413

Query: 756 SKKKGKAHLKSLRKQ 770
           +    +  L  L + 
Sbjct: 414 TVNIIEKKL--LEED 426


>gi|297202208|ref|ZP_06919605.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|297148059|gb|EDY61279.2| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 723

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 66/184 (35%), Gaps = 20/184 (10%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
                   ++AT    +  +      + + R   +  P             +   I  A 
Sbjct: 178 RYMSQPTHINAT-SPDDAGRTVANTKQHVYRAHNMDKPE------------MVARILQAE 224

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +GL +++   TKR A DL + L +R      +H ++    R + +R  R GK DVLV  
Sbjct: 225 GRGL-VMVFCRTKRTAADLADQLKQRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLVCT 283

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQ 698
           ++   G+D+     V      +E     + + +  IGR  R     + I   D       
Sbjct: 284 DVAARGIDVEGVTHVINYQCPEE-----EKTYLHRIGRTGRAGAKGIAITLVDWDDIPRW 338

Query: 699 LAID 702
             I+
Sbjct: 339 QLIN 342


>gi|218192669|gb|EEC75096.1| hypothetical protein OsI_11255 [Oryza sativa Indica Group]
          Length = 1023

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 16/188 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVE-----IRSARTQVEDVYDE 574
            T++ SAT   +++E+    I+   IR T    G  +  ++     + S   ++  + ++
Sbjct: 411 QTLLFSAT-MPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLLSDAEKMPWLLEK 469

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +      G  +L+    K   +++   L +R  R+  +H +     R+E ++  + G + 
Sbjct: 470 LPGMIDDGD-VLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYH 528

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   GLDI     V   D  KE  +      I  IGR  R  +     Y     
Sbjct: 529 VLVATDVAARGLDIKSIKTVVNFDIAKEMDMH-----IHRIGRTGRAGDKDGTAYTLITQ 583

Query: 695 KSIQLAID 702
           K ++ A +
Sbjct: 584 KEVRFAGE 591


>gi|91206537|sp|Q4X195|DBP2_ASPFU RecName: Full=ATP-dependent RNA helicase dbp2
          Length = 547

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 72/184 (39%), Gaps = 14/184 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T + SAT      +     + + I    G +D          VE+ S   + + +   +
Sbjct: 301 QTCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHL 360

Query: 576 NLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               + +  + L+   TKR+A+++T +L +       +H + +  ER  ++ + + GK  
Sbjct: 361 EKIMENRSNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSP 420

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           ++V  ++   G+D+ +   V   D     +  +    I  IGR  R       +   T  
Sbjct: 421 IMVATDVASRGIDVRDITHVLNYD-----YPNNSEDYIHRIGRTGRAGAKGTAITFFTTE 475

Query: 695 KSIQ 698
            S Q
Sbjct: 476 NSKQ 479


>gi|19113180|ref|NP_596388.1| ATP-dependent RNA helicase Dbp3 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|1723271|sp|Q10202|DBP3_SCHPO RecName: Full=ATP-dependent RNA helicase dbp3
 gi|3451298|emb|CAA20430.1| ATP-dependent RNA helicase Dbp3 (predicted) [Schizosaccharomyces
           pombe]
          Length = 578

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 16/185 (8%)

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
           V  T GS EL   Q      I +   ++D P   RS    ++++  +   +  +  +IL+
Sbjct: 371 VKITIGSDELAASQN-----ITQIVEILDDP---RSKERMLDNLLRKHLSSGGKDDKILI 422

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
            VL K+ A  +   L  R   V  +H ++    R++ + D + GK  VLV  ++   GLD
Sbjct: 423 FVLYKKEAARVEGTLA-RKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLD 481

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTR 706
           IP+  LV  +      F  +    +  IGR  R N     I +     KS    +    R
Sbjct: 482 IPKVQLVINV-----TFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLR 536

Query: 707 RREKQ 711
           +  KQ
Sbjct: 537 Q-AKQ 540


>gi|325913813|ref|ZP_08176172.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539888|gb|EGD11525.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 570

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+              +  +             + + GF      D R L   
Sbjct: 141 TPGRLIDYV----------KQHKVVSLHACEICVLDEADRMFDLGFI----KDIRFLLRR 186

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIR---SARTQVED 570
                   T++ SAT     LE     + E    ++    +    V  R    +  + + 
Sbjct: 187 MPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQT 246

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +   ++ G R ++ V TK   E +   L     RV  +  +V   +R  ++   + 
Sbjct: 247 LLLGLLSRSE-GARTMVFVNTKAFVERVARTLERNGYRVGVLSGDVPQKKRESLLNRFQK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G+ ++LV  ++   GL I     V   D             +  IGR AR       I +
Sbjct: 306 GQLEILVATDVAARGLHIDGVKYVYNYD-----LPFDAEDYVHRIGRTARLGEEGDAISF 360

Query: 690 ADT 692
           A  
Sbjct: 361 ACE 363


>gi|289668227|ref|ZP_06489302.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 640

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 73/186 (39%), Gaps = 8/186 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     K +  +I+ 
Sbjct: 311 GLDVERVSHVLNYD-----IPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIER 365

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE--DAATTNISIDAQQLSLSKKKGK 761
            TR+  ++++      +N   V   +  + + +     D     +     + ++      
Sbjct: 366 ATRQPIEEMQLPSVDAVNDTRVARFMTRITESLAGGQIDMYRDLLQRYETENNVPAIDIA 425

Query: 762 AHLKSL 767
           A +  L
Sbjct: 426 AAMAKL 431


>gi|149917594|ref|ZP_01906091.1| putative ATP-dependent RNA helicase RhlE [Plesiocystis pacifica
           SIR-1]
 gi|149821657|gb|EDM81055.1| putative ATP-dependent RNA helicase RhlE [Plesiocystis pacifica
           SIR-1]
          Length = 437

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 77/216 (35%), Gaps = 12/216 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-----VYDEIN 576
           +  T+  SAT  S   E    ++ + +      V  P ++      V+      +  ++ 
Sbjct: 177 KRQTLFFSATMPSAIKELAATLLDDPVEVAVARVSEPADVDQRLYFVDKGNKRKLLVDLL 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            A     R L+   TK  A  + ++L    +    +H       R   +   + G+  VL
Sbjct: 237 RADPSVSRSLVFSRTKHGANRIAKHLSAAGVSSAAIHGNKSQNARTRALEAFKGGELRVL 296

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLDI +   V   D           + I  IGR AR  NS + L    + + 
Sbjct: 297 VATDIAARGLDISKVSHVINFD-----LPNVPETYIHRIGRTARAGNSGIALSFCDVEER 351

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
               + +  R     +E  + H   P     ++ ++
Sbjct: 352 AY--LVDIERLLRAHIERIEDHGYPPSQALPELTDL 385


>gi|146319228|ref|YP_001198940.1| superfamily II DNA/RNA helicase [Streptococcus suis 05ZYH33]
 gi|146321430|ref|YP_001201141.1| superfamily II DNA/RNA helicase [Streptococcus suis 98HAH33]
 gi|253752268|ref|YP_003025409.1| DEAD box helicase family protein [Streptococcus suis SC84]
 gi|253754094|ref|YP_003027235.1| DEAD box helicase family protein [Streptococcus suis P1/7]
 gi|253756028|ref|YP_003029168.1| DEAD box helicase family protein [Streptococcus suis BM407]
 gi|145690034|gb|ABP90540.1| Superfamily II DNA and RNA helicase [Streptococcus suis 05ZYH33]
 gi|145692236|gb|ABP92741.1| Superfamily II DNA and RNA helicase [Streptococcus suis 98HAH33]
 gi|251816557|emb|CAZ52193.1| DEAD box helicase family protein [Streptococcus suis SC84]
 gi|251818492|emb|CAZ56321.1| DEAD box helicase family protein [Streptococcus suis BM407]
 gi|251820340|emb|CAR46890.1| DEAD box helicase family protein [Streptococcus suis P1/7]
 gi|319758658|gb|ADV70600.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
          Length = 514

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 79/200 (39%), Gaps = 16/200 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ +IRD +  + DVLV 
Sbjct: 236 VDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +   
Sbjct: 296 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGY 350

Query: 699 LAIDE--TTRRRE------KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
           LAI E  T +R +       +     K  +  + ++ ++ +       +      I + A
Sbjct: 351 LAIIEDLTKKRMKGLKPATAEEAFEAKKKVALKKIEREMADETIRNNFDKFKKDAIQLAA 410

Query: 751 QQLSLSKKKGKAHLKSLRKQ 770
           +    + ++   ++ +L  Q
Sbjct: 411 EF---TPEELALYVLTLTVQ 427


>gi|125839926|ref|XP_001340860.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 [Danio rerio]
          Length = 483

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 86/267 (32%), Gaps = 57/267 (21%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            +   +   ++ SAT                +E+     + ++ I +    V    ++  
Sbjct: 257 SFLPKKRQILLYSATFPISVQKFMTKHLQKPYEINLMDELTLKGITQYYAYVTERQKVH- 315

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   + +  E L + + +      Y+H+++    R  
Sbjct: 316 -------CLNTLFSRLQINQSI-IFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRNR 367

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +L   G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 368 VFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRYGH 422

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ--SVKEKIMEVIDPILLEDA 741
             + +   T                      N K  I  Q  +  + I   ID  L    
Sbjct: 423 LGLAINLITSEDR-----------------FNLK-GIEDQLMTDIKPIPSSIDKSLYV-- 462

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKSLR 768
                   A+  S++  + +A  K+  
Sbjct: 463 --------AEFHSMNPDEEEAAHKTGE 481


>gi|87121489|ref|ZP_01077378.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
 gi|86163332|gb|EAQ64608.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
          Length = 617

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 94/244 (38%), Gaps = 23/244 (9%)

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
            +  IV +    T +     ++ S   +++ +   + ++   G  +++ V TK    +L 
Sbjct: 208 KEVKIVTKTATNTSITQKYWQV-SGLHKLDALTRILEMSEHDG--MIIFVRTKAATVELA 264

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           E L  R      ++ ++    R   +  ++ G+ D+LV  +++  GLDI     V   D 
Sbjct: 265 EKLTARGHACEALNGDISQNLRERTVERIKRGQIDILVATDVVARGLDIDRISHVVNYD- 323

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKH 718
                     S +  IGR  R   +   IL+     + +  AI+  TR+  ++++     
Sbjct: 324 ----IPYDTESYVHRIGRTGRAGRTGNAILFVAHRERRMLQAIERATRQPIERMQLPTAS 379

Query: 719 NINPQSVKE---KIMEVID-----------PILLEDAATTNISIDAQQLSLSKKKGKAHL 764
           +IN Q V     +I + +D               ++     + + A    +++ K    L
Sbjct: 380 DINTQRVNRFKQRITDTLDNADLDFFIELAESYQKEHEAEPLKVAAALAHMAQGKNPLLL 439

Query: 765 KSLR 768
             + 
Sbjct: 440 SEME 443


>gi|167748398|ref|ZP_02420525.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
 gi|167652390|gb|EDR96519.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
          Length = 466

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 104/281 (37%), Gaps = 42/281 (14%)

Query: 524 TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT           ++ +     +V + +    +     E+R  + +VE +   +
Sbjct: 189 QTLLFSATMPKAILDITKKYQKDSKLIKVVRKELTVPNIEQYYYEVRPKQ-KVEVLCRLL 247

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++ + +    ++   TKRM +++T  L  R      +H ++K  +R  +++  R G+ D+
Sbjct: 248 DMHSPK--LSIVFCNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDI 305

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+D+ +   V   D       +     +  IGR  R   +           
Sbjct: 306 LVATDVAARGIDVDDVDAVFNYD-----LPQDDEFYVHRIGRTGRAGRTGNAFTFV---- 356

Query: 696 SIQLAIDETTRRREKQL--EHNKKHNINP------QSVKEKIMEVIDPILLEDAATTNI- 746
               A  E  + R+ Q   +   K    P       +  EK +E I  ++ E+     + 
Sbjct: 357 ----AGKEIYKLRDVQRYCKTKIKARPIPSLNDVQATRAEKSLEEITGLIEENNLDKYVD 412

Query: 747 -------SIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNF 780
                    D   L ++    K  +    +Q   A  + +F
Sbjct: 413 MLDEFINETDFTALEIAAAFLKKQISENEEQ--EAQQSEDF 451


>gi|124360402|gb|ABN08415.1| Helicase, C-terminal [Medicago truncatula]
          Length = 499

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 66/181 (36%), Gaps = 14/181 (7%)

Query: 524 TTIVVSAT-PGSWEL-------EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E           + II  + ++    +   V+I   + + + +   +
Sbjct: 275 QTLYWSATWPKEVEQLARQFLYNPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLL 334

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G RIL+ + TK+  + +T  L         +H +    ER  ++ + + GK  +
Sbjct: 335 ED-IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPI 393

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  S    +  IGR  R           T   
Sbjct: 394 MTATDVAARGLDVKDVKYVINYD-----FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 448

Query: 696 S 696
           +
Sbjct: 449 A 449


>gi|312221996|emb|CBY01936.1| hypothetical protein [Leptosphaeria maculans]
          Length = 602

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 69/189 (36%), Gaps = 19/189 (10%)

Query: 521 LRPTTIVVSAT--PGSWELEQCQGIIVEQI---------IRPTGLVDPPVEIRSARTQVE 569
            +  T++ +AT  P   EL         +I         +R    +   VE+     + +
Sbjct: 363 KKRQTLMFTATWPPSVRELASTFMNSPVKITIGDNVSGELRANVRIKQVVEVIDPHAKEQ 422

Query: 570 DVYDEINLA---AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            +   +        +  RIL+  L K+ A  +  ++  +  RV  +H ++   +R   + 
Sbjct: 423 RLIQLLKQYQSGKNKDDRILVFCLYKKEAVRIENFIRMKGFRVGGIHGDLTQEKRSASLA 482

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             + G   +LV  ++   GLDIP   +V  +      F  +    +  IGR  R     +
Sbjct: 483 AFKEGHVPLLVATDVAARGLDIPAVKVVINV-----TFPLTAEDYVHRIGRTGRAGKEGL 537

Query: 687 ILYADTITK 695
            +   T   
Sbjct: 538 AITFFTEHD 546



 Score = 41.6 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 77/198 (38%), Gaps = 31/198 (15%)

Query: 41  MVADAMRRIRSEAGKHRKNAAKRMLIHQRENTASKGEFQSQSSISMSEKQTREISEQTMT 100
              +A + +  +A K  + A K+ L    E ++++    + S  ++  + +    E  + 
Sbjct: 89  AAGEADKSV-DKADKAARKAEKKRLKALAEGSSTESASTAPSGTTLMVESSATSPEPPVQ 147

Query: 101 P----SVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQ----------MQTD 146
                  + LA+L QS+        + T        +  + IT F+              
Sbjct: 148 AGEYQESKELAQLPQSEIDAFLTKNVMTIEDPKPALHKLRPITLFKYLNIDASQRAFFAK 207

Query: 147 Y-HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTF--------TMAKVIEAMQR--P 195
           +  P+  Q A    LL G     +  + +  TGSGKT          ++ + +  ++   
Sbjct: 208 FTAPTPIQAATWPFLLSG-----RDMVGVAETGSGKTLAFGVPCVRYISSLPKEKRKGIK 262

Query: 196 AIVMAPNKILAAQLYSEF 213
           A++++P + LA Q+Y + 
Sbjct: 263 AVIVSPTRELAVQIYDQL 280


>gi|307298712|ref|ZP_07578515.1| transcription-repair coupling factor [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915877|gb|EFN46261.1| transcription-repair coupling factor [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 1012

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 79/185 (42%), Gaps = 4/185 (2%)

Query: 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSS 277
               +E F+  ++  + + +    D +  +E   + +I   R +  R LL      V +S
Sbjct: 31  SERMLESFIEIHEKREGDGFFFSHDVFPFEEIGTSSRIRSERLALLRKLLLGELRTVYTS 90

Query: 278 VSCI-YGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI 336
              I      +E + ++  ++++G  +   E  S L    Y R     I G F + G  +
Sbjct: 91  FHGILRKTVPIEVFEELSFKVEVGGPMTITE--SQLQSLGYSRSFSVTIPGEFAIRGGIV 148

Query: 337 EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM 396
           ++F    E +  R+  F  +IE I  F P++ + ++ +  + I   +  +T  P   TA+
Sbjct: 149 DVFIPGSE-MPVRIDTFDREIESIRSFDPVSQKSLQRLNEVLITPAAEGITASPFRETAL 207

Query: 397 KYIKE 401
           K I+ 
Sbjct: 208 KRIRA 212



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 80/212 (37%), Gaps = 26/212 (12%)

Query: 513 LRFEEWNCLRPTT--IVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQ 567
           L+ E +  LR     + +SATP    L      + +  I    P G   P + +     Q
Sbjct: 608 LQKEHFKKLRLQVNVLSMSATPIPRTLYMSLSGLRDLSIISTPPAGRTSPEIYV----GQ 663

Query: 568 VEDVY---DEINLAAQQGLRILLTVLTKRMAEDLT---EYLYERNIRVRYMHSEVKTLER 621
           + D       +    + G  I +      + E L+   + L E  I V   H ++     
Sbjct: 664 INDRLIRTAVLRETNRGGQTIFVHNRVTELQELLSRLRDLLPEVKIDVA--HGQMNKSAF 721

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
              IRD  LG+ D+L+   ++  G+D+P    + + D+ + G  +    L Q  GR  R+
Sbjct: 722 ERTIRDFYLGELDMLLCTTIIESGVDVPNANTLIVDDSHRYGLAQ----LYQLRGRVGRS 777

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLE 713
                  +           + + +R R K L+
Sbjct: 778 NRRAFSYFLYDP-----KRLSDPSRERLKALK 804



 Score = 43.2 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 85/481 (17%), Positives = 170/481 (35%), Gaps = 63/481 (13%)

Query: 235 EAYVPRTDTYIEKESSINEQIDRMRH---SATRSLLERNDCIVVSSVSCIYGIGSVESYS 291
           + ++P ++  + +  + + +I+ +R     + +SL   N+ ++  +   I      E+  
Sbjct: 149 DVFIPGSEMPV-RIDTFDREIESIRSFDPVSQKSLQRLNEVLITPAAEGITASPFRETAL 207

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQ------YKRQDI--GIIRGTFRVCGDSIEIFPSHL 343
           + I   +    V  + LL  L          Y+RQ I    + G      + I + P   
Sbjct: 208 KRIRAAEQATGVSDEILLDRLDTMDTTAGIFYERQSILLDFLEGY-----NVIFVKP--- 259

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRN--------VETIKIYANSHYVTPRPTLNTA 395
            D A  V     + E +     L+ + +R         V +  +     Y        ++
Sbjct: 260 -DDAI-VEYGRRERETLEL---LSEKAVRKFLYIRYGGVSSEVLMKLKEYSIVSDGDVSS 314

Query: 396 MKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYS-RYLTGRNP 454
           + Y  EEL   L  +++  R  E + L +    D   LE        E    RYL  R  
Sbjct: 315 LDY-DEELTEELQIIKRPRR--EEEYLPRIPVVDWTELEEGDYVVHKEYGIGRYLGVRTV 371

Query: 455 ----GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDN 510
               G     L EY   + +    +    + +  G   G          +  +       
Sbjct: 372 ENILGTREYLLLEYRDGNKIYVPVDRVDRVHKYIGSTEGIQLNSLRGTAWTRQKSKVNKE 431

Query: 511 RPLRFEEWNCLRPTTIVVSATP--GSWELEQ------------CQGIIVEQI---IRPTG 553
                 + + L  +  V S  P  G  E+E+             Q   VE++   ++ T 
Sbjct: 432 VKALISDLSNLYGSREVTSGVPLTGDSEMEKGFRDSFPYVETEDQQKAVEEVMEDLQSTK 491

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLT----KRMAEDLTEYLYERNIRV 609
            +D  +   +   + E            G ++ + V T    ++  E+    L    IRV
Sbjct: 492 PMDRLISGDAGYGKTEVALRAAFRTVVSGKQVAVLVPTTVLARQHYENFERRLNPFGIRV 551

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPECGLVAILDADKEGFLRSK 668
             +      ++R ++++ L+ G+ DV+VG + LL + +   + GLV + +    G L+ +
Sbjct: 552 EILDRYRTDVQRNKLLKKLKKGEVDVVVGTHSLLSKEVGFADLGLVVVDEEQLFGVLQKE 611

Query: 669 T 669
            
Sbjct: 612 H 612


>gi|225684691|gb|EEH22975.1| DEAD box family helicase [Paracoccidioides brasiliensis Pb03]
          Length = 652

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 6/138 (4%)

Query: 568 VEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           V D+     L+     +  L+  +     + LT+      +  RY+ S+ +   R E + 
Sbjct: 278 VNDITVRAWLSRASDRKSTLVFGVDIDHVKCLTDTFRRFGVDARYITSQTRKNLRTEELE 337

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R  ++ VLV   L  EG DIP    V +    +     SK  LIQ IGR  R    K 
Sbjct: 338 AFRNQEYPVLVNCGLFTEGTDIPNIDCVLLARPTR-----SKNLLIQMIGRGLRLHPGKE 392

Query: 687 ILYADTITKSIQLAIDET 704
             +   +  S+   +  T
Sbjct: 393 NCHIIDMVASLNTGVTTT 410



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ------RPAIV 198
           +D+     Q   I  +L  +    K   +   TGSGKT    ++I+ +       +  ++
Sbjct: 47  SDFRLRSYQEECIQSVLSYLKKGHKRLGVSLATGSGKTVIFTQLIDRIPPRDIIAKQTLI 106

Query: 199 MAPNKILAAQLYSEFKNFFPHNAVE 223
           +   K L  Q        +P   +E
Sbjct: 107 IVHRKELVEQAAKHCMRAYPEKTIE 131


>gi|73966874|ref|XP_852958.1| PREDICTED: similar to ATP-dependent RNA helicase ROK1 isoform a
           [Canis familiaris]
          Length = 598

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H++    +R   +   R GK
Sbjct: 402 MRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGK 461

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     LV   D     F  S    I  IGR  R  +  K + +  
Sbjct: 462 IWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGHKGKAVTFFT 516

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 517 EDDKPLLRSV 526


>gi|242371572|ref|ZP_04817146.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
 gi|242350724|gb|EES42325.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
          Length = 525

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 17/194 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPTG--LVDPPVE----IRSARTQVEDVYDEI 575
            T++ SAT      EL Q Q +   +II+     + DP +E    I     + +   + +
Sbjct: 193 QTMLFSATMPKAIQELVQ-QFMKTPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFL 251

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +    Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+
Sbjct: 252 D--VHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 309

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLDI     V   D       +   S    IGR  R     + + + + I 
Sbjct: 310 LVATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIE 364

Query: 695 KSIQLAIDETTRRR 708
                 I++   RR
Sbjct: 365 MDYIRQIEDVNGRR 378


>gi|222056385|ref|YP_002538747.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221565674|gb|ACM21646.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 443

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 77/202 (38%), Gaps = 9/202 (4%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR----SARTQVEDVYDEIN 576
            +  T++ SAT           I+   +    G   PPV +          ++       
Sbjct: 174 KKRQTLLFSATMPPDIKRLAGEILHNPVTVQVGSTAPPVTVNHAIYPVSQHLKTPLLLEL 233

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L       +L+   TK  A+ + E L +   R   +   +    R   +   R G F +L
Sbjct: 234 LRHTDKQSVLVFTKTKHRAKRVGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGSFQIL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT--IT 694
           V  ++   G+D+ +   V   D   +    +    I   GRA+R+ ++  ++ A+   + 
Sbjct: 294 VATDIAARGIDVTQISHVVNYDITDK--AETYIHRIGRTGRASRSGDAFTLVTAEDTAMV 351

Query: 695 KSIQLAIDETTRRREKQ-LEHN 715
           ++I+ A+     RR  +  ++N
Sbjct: 352 RTIEKALGAPLERRTVEGFDYN 373


>gi|50838814|ref|NP_001002869.1| probable ATP-dependent RNA helicase DDX27 [Danio rerio]
 gi|49618925|gb|AAT68047.1| DEAD box polypeptide 27 [Danio rerio]
          Length = 776

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 100/261 (38%), Gaps = 25/261 (9%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRS-ARTQVE 569
             +  T++ SAT  S E++    + ++Q +R            L    V IR       E
Sbjct: 376 AYQRQTMLFSAT-MSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDRE 434

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   +     Q   ++L   TK+ A  +   L    ++V  +H  +   +R+E +R  +
Sbjct: 435 AIVAALLTRTFQDH-VMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFK 493

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVIL 688
             + D+LV  ++   GLDI     V            +    +  +GR AR     + + 
Sbjct: 494 DEQIDILVATDVAARGLDIEGVKTVINF-----TMPNTVKHYVHRVGRTARAGKVGRSVS 548

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                 + +   I        K+ +   K  + PQ V  K  ++I+ +  +  A   +  
Sbjct: 549 LVGETERKMLKEIV-------KKAKFPVKARVIPQEVILKFRDLIEKLEKDVYAVLCLEK 601

Query: 749 DAQQLSLSKKKGKAHLKSLRK 769
           + ++++ S+ +  +  K L K
Sbjct: 602 EEKEMAHSEAQISSAQKRLTK 622


>gi|15150336|gb|AAK85400.1|AF399934_1 RNA helicase p47 [Spisula solidissima]
          Length = 449

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 92/281 (32%), Gaps = 42/281 (14%)

Query: 457 PPPTLFEYIPED-------SLLFVDESHVTIPQ-ISGMYRGDFHRKATLAEYGFRLPSCM 508
            P  + + + ++        +L +DE+   + Q   GM            +    L S  
Sbjct: 178 TPGRILDLMNKNLVKIGKCGILVLDEADKLLSQDFKGMLDSIISHLPN--DRQILLYSAT 235

Query: 509 DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
              PL  E++                +E+     + ++ + +    V    ++       
Sbjct: 236 --FPLSVEQFMRKYLQ--------SPYEINLMDELTLKGVTQYYAFVQEKQKVH------ 279

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
               + +    Q    I +   + +  E L + + E      Y+H+ +    R  +  D 
Sbjct: 280 --CLNTLFSKLQINQSI-IFCNSTQRVELLAKKITELGYSCFYIHARMNQQHRNRVFHDF 336

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G    LV  +L   G+DI    +V   D     F +   + +  IGR+ R  +  + +
Sbjct: 337 RQGLCRNLVCSDLFTRGIDIQAVNVVINFD-----FPKHAETYLHRIGRSGRYGHLGIAI 391

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
              T      L   E+    E +          P+++ + +
Sbjct: 392 NLITYDDRFSLHKIESELGTEIK--------PIPKNIDKAL 424


>gi|76253275|emb|CAH61467.1| Pl10-related protein [Rana lessonae]
          Length = 687

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 62/172 (36%), Gaps = 15/172 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYD 573
              T++ SAT    E++      +E+ I          +  +   V       +   + D
Sbjct: 418 VRQTMMFSAT-FPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLD 476

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +N   +  L  L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 477 LLNATGKDSL-TLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 535

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 536 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 582


>gi|116491614|ref|YP_811158.1| superfamily II DNA/RNA helicase [Oenococcus oeni PSU-1]
 gi|116092339|gb|ABJ57493.1| Superfamily II DNA and RNA helicase [Oenococcus oeni PSU-1]
          Length = 521

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 76/192 (39%), Gaps = 13/192 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
            T++ SAT    ++++     +E      I   GL    V+     T+  + +D +    
Sbjct: 176 QTLLFSAT-MPDDIKKIGVKFMEDPEEVHIASKGLTIDLVDQYLVNTREYEKFDAMTRLF 234

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +Q    ++   TKR  ++LT+ L  R  +   +H ++    R+  +R  + G+   LV
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R  +  V + +       
Sbjct: 295 ATDVAARGLDISGVTHVYNYDV-----PQDPESYVHRIGRTGRAGHHGVSVTFVVRGEID 349

Query: 697 IQLAIDETTRRR 708
              AI++   +R
Sbjct: 350 YLRAIEKLINKR 361


>gi|227496195|ref|ZP_03926501.1| superfamily II helicase [Actinomyces urogenitalis DSM 15434]
 gi|226834278|gb|EEH66661.1| superfamily II helicase [Actinomyces urogenitalis DSM 15434]
          Length = 762

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A  +    ++ V TK  AED+   L  R I+   +  +V   ER  ++  LR G  DVLV
Sbjct: 357 ATTEAEAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRSGTLDVLV 416

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLD+   GLV   D  +E       + +  IGR  R       + +     K 
Sbjct: 417 ATDVAARGLDVDRIGLVVNFDVPRE-----AEAYVHRIGRTGRAGRHGEAVTFLTPKEKG 471

Query: 697 IQLAIDE-TTRRRE 709
               I+  T  R E
Sbjct: 472 KLRQIERLTGTRLE 485


>gi|218462794|ref|ZP_03502885.1| ATP dependent RNA helicase protein [Rhizobium etli Kim 5]
          Length = 398

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 61/181 (33%), Gaps = 13/181 (7%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVED-----VYDEI 575
            T+  SAT  P   +L        E+I +         V  R   +  +D     V  E+
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLREL 239

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A  +    ++    K+   DL   L      V  +H ++    R  +++  R G   +
Sbjct: 240 VRAQTELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMMLQSFRDGNLQL 299

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP+   V   D             +  IGR  R   S       T   
Sbjct: 300 LVASDVAARGLDIPDVSHVFNFDVPI-----HSEDYVHRIGRTGRAGRSGAAFTLVTKRD 354

Query: 696 S 696
           +
Sbjct: 355 T 355


>gi|187933251|ref|YP_001885671.1| cold-shock deAd box protein a [Clostridium botulinum B str. Eklund
           17B]
 gi|187721404|gb|ACD22625.1| cold-shock deAd box protein a [Clostridium botulinum B str. Eklund
           17B]
          Length = 367

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 74/203 (36%), Gaps = 19/203 (9%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE----- 574
             +  T+  SAT  S   +     +++ +     +  P + +   + QV +  D      
Sbjct: 172 SKKHQTLCFSATMDSQVKKLAYRYMIDPL--FIDIKSPTIAVDKIKQQVVETTDRWKQDS 229

Query: 575 --INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               L        ++   TKR A+ L   L+++ +  + +HS+V   +R  I++  R   
Sbjct: 230 LCAALQEDNPFMAIIFCRTKRRADVLEIALHQKGLNCQKIHSDVPQAKRERIMKSFRNAD 289

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
              L+  ++   G+DI     +   D        +  S I  IGR  R            
Sbjct: 290 IQYLIATDVAARGIDISGVSHIYNYDT-----PETPESYIHRIGRTGRAGEDGYTCMFVA 344

Query: 693 ITKS-IQLAIDE----TTRRREK 710
              S +  AI++    T  RRE 
Sbjct: 345 PKDSYLLNAIEKKLGFTIPRREI 367


>gi|156043047|ref|XP_001588080.1| hypothetical protein SS1G_10526 [Sclerotinia sclerotiorum 1980]
 gi|154694914|gb|EDN94652.1| hypothetical protein SS1G_10526 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 548

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 72/191 (37%), Gaps = 19/191 (9%)

Query: 522 RPTTIVVSAT--PGSWELEQCQGIIVEQI---------IRPTGLVDPPVEI---RSARTQ 567
           +  T++ +AT      EL         +I         +R    +   VE+   R    +
Sbjct: 358 KRQTLMFTATWPESVRELASTFMTSPVKIAIGDNPTGDLRANSRIVQKVEVVEPRDKEYR 417

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +  +  +    +Q+  RIL+  L K+ A  +  ++ ++  RV  +H ++   +R   +  
Sbjct: 418 LMQLLKQYQSGSQKDDRILVFCLYKKEATRVEGFIRQKGFRVAGIHGDLSQEQRTRSLEA 477

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + G   VLV  ++   GLDIP   LV         F  +    +  IGR  R     + 
Sbjct: 478 FKSGNTPVLVATDVAARGLDIPAVKLVINC-----TFPLTVEDYVHRIGRTGRAGKDGLA 532

Query: 688 LYADTITKSIQ 698
           +   T     Q
Sbjct: 533 ITLFTEHDKAQ 543


>gi|6635383|gb|AAF19805.1| EIF4A protein [Brassica oleracea]
          Length = 354

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 18/198 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 145 YDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 204

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 205 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 262

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 263 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 317

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +  T  + +   I
Sbjct: 318 GVAINFMTTDDERMLSDI 335


>gi|293401901|ref|ZP_06646041.1| DEAD/DEAH box family ATP-dependent RNA helicase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304559|gb|EFE45808.1| DEAD/DEAH box family ATP-dependent RNA helicase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 580

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 109/273 (39%), Gaps = 46/273 (16%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             TI+ SAT     L+  +    + +          VEI+S++  + D  ++I   A +G
Sbjct: 179 HQTILFSATWPQAILKITEQFQKDPV---------RVEIKSSQRTI-DTVEQIYYEAPRG 228

Query: 583 LR---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            +                ++   TK+M ++L E L + +I+   +H ++K   R  ++  
Sbjct: 229 KKANALRVLLNHYDPDLCMIFCNTKKMVDELCEELNKHDIKATSLHGDMKQEFRSRVMEQ 288

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            R G   +L+  ++   G+D+ +  LV   D  ++  +      +   GRA +   +  +
Sbjct: 289 FRNGTSPILIATDVAARGIDVDDIDLVVNFDIPQD--MEYYIHRVGRTGRAGKKGLAITL 346

Query: 688 LYADTITKSIQLAIDET----TRR----REKQLEHNK-----------KHNINPQSVKEK 728
           +       +I+  I  T    TR       + +E N+              I  +S++  
Sbjct: 347 ISGGKQRGAIKDVIRYTKTNITRHALPTSAQMMEANRNAFIAKVKEACDEGITEESIEIA 406

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761
              + D I LE+  +  IS++ +   +  ++ +
Sbjct: 407 NALMADGIALENIISALISMNYKNEVIDIEEEE 439


>gi|239989321|ref|ZP_04709985.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           11379]
          Length = 527

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 17/157 (10%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q  D Y      A +  R+++ + TK   + LT++L    +R   +H      +R   + 
Sbjct: 307 QGADKYATTTEIAARDGRVIMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLD 366

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             + G+  VLV  N+   G+ +    LV  +D             +   GR AR   S  
Sbjct: 367 RFKTGQVTVLVATNVAARGIHVDNLDLVVNVDP-----PTDHKDYLHRGGRTARAGESGS 421

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           ++                 +RRE          I PQ
Sbjct: 422 VVTLVLP-----------NQRREMTRLM-ADAGITPQ 446


>gi|256083212|ref|XP_002577843.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238663176|emb|CAZ34081.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 794

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 77/205 (37%), Gaps = 22/205 (10%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQ----------GIIVEQIIRPTGLVDPPVEIRSARTQV 568
           N  +P T++ SAT  SW  E  +           +I EQ  + +  V     +    ++ 
Sbjct: 358 NSEKPQTLLFSATMPSWVSEISRCYLSDDALHLSLIDEQETKTSTNVTHLALLCPYESRA 417

Query: 569 EDVYDEIN-LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
             + D I      +  R ++    K+ A++L+            +H  V   +R  +++ 
Sbjct: 418 ATLSDVIKVYCKGRESRCIVFCERKKDADELSASDAMSG-DCHVLHGSVPQDKRELVLQR 476

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV- 686
            R GK+  L+  N+   GLD+P   LV      ++         I   GR  R   S   
Sbjct: 477 FRDGKYRTLLTTNVAARGLDVPNVDLVIQCHPPRD-----IEDYIHRSGRTGRADRSGTS 531

Query: 687 ILYADTITKSIQLAID----ETTRR 707
           I +     +S+   I+     T RR
Sbjct: 532 ICFYTYKERSMLSRIENMAGITFRR 556


>gi|258566537|ref|XP_002584013.1| hypothetical protein UREG_06980 [Uncinocarpus reesii 1704]
 gi|237907714|gb|EEP82115.1| hypothetical protein UREG_06980 [Uncinocarpus reesii 1704]
          Length = 512

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 75/234 (32%), Gaps = 32/234 (13%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            ++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 219 SFHPKDRQVMLFSATFPMIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEERQKVH- 277

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 278 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMFQQNRNR 329

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 330 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 384

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQ-----LEHNKKHNINPQSVKEKIMEV 732
             + +          L   E     E Q     ++        P+++   I   
Sbjct: 385 LGLAINLIGWEDRYNLYKIEQELGTEIQPIPPSIDKKLYVYDTPETIPRPIANA 438


>gi|159045255|ref|YP_001534049.1| putative ATP-dependent RNA helicase [Dinoroseobacter shibae DFL 12]
 gi|157913015|gb|ABV94448.1| putative ATP-dependent RNA helicase [Dinoroseobacter shibae DFL 12]
          Length = 434

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 58/177 (32%), Gaps = 30/177 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT             +E++ R        VE+     ++ D   +     +QG 
Sbjct: 177 QTMLFSAT---------MPKQMEELSRAYLTDPARVEVAP-PGKIADKITQSVHFVEQGA 226

Query: 584 RI---------------LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +                L+   TK  A+ L   L         +H      +R   ++  
Sbjct: 227 KTQLLIDLLGNHRDELALVFSRTKHGADRLARKLSNAGFETAAIHGNRSQGQRERALKAF 286

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           R G   VLV  ++   G+DIP+   V   D           + +  IGR AR     
Sbjct: 287 REGTLKVLVATDVAARGIDIPDVRFVYNFD-----LPNVPENFVHRIGRTARAGRDG 338


>gi|61563575|gb|AAX46760.1| putative DEAD-box family RNA helicase PL10 [Carassius auratus]
          Length = 582

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 15/170 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT    E++      +E+ I          +  +   V       +   + D +
Sbjct: 403 QTMMFSAT-FPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLL 461

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           N   ++ L  L+ V TK+ A+ L ++LY        +H +    +R E +   R G+  +
Sbjct: 462 NATGKESL-TLVFVETKKGADSLEDFLYREGYSCTSIHGDRTQRDREEALHQFRSGRCPI 520

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 521 LVATAVAARGLDISNVKHVINFD-----LSSDIEEYVHRIGRTGRVGNLG 565


>gi|327282752|ref|XP_003226106.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Anolis
           carolinensis]
          Length = 697

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 14/180 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T++ SAT         +  + + +I   G +D          V +     +       I
Sbjct: 471 QTVMTSATWPDGVRRLAKSYLKDPMIVYVGTLDLAAVNTVEQRVVVIPEEEKRAFTRFFI 530

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +    +  ++++ V  K  A+DL+     + I V+ +HS  +  +R + + D R G+  V
Sbjct: 531 DSMKSED-KVIIFVGKKLTADDLSSDFSLQGIPVQSLHSNREQCDREQALEDFRQGRVRV 589

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  +L   GLD+ +   V   D     F R+    +  +GR  R   +   +   T   
Sbjct: 590 LVATDLASRGLDVQDITHVFNFD-----FPRNIEEYVHRVGRTGRAGRTGEAVTLVTRND 644


>gi|330792086|ref|XP_003284121.1| hypothetical protein DICPUDRAFT_27074 [Dictyostelium purpureum]
 gi|325085935|gb|EGC39333.1| hypothetical protein DICPUDRAFT_27074 [Dictyostelium purpureum]
          Length = 593

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 68/181 (37%), Gaps = 13/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGL--------VDPPVEIRSARTQVEDVYDEI 575
            T++ SAT            + + I    G         V+  VE+ S   + E ++  +
Sbjct: 399 QTLMFSATWPKEVQSLANDFLSDHIQVHIGSSELTANHNVNQIVEVCSEYEKKERLFKFL 458

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                +  ++++   T++  ++L   L     +   +H      ER  ++   + G F +
Sbjct: 459 EANVSKDDKVIIFAETRKGVDELHRSLQSAGFKSIGIHGNKSQPERDFVLSQFKNGIFPI 518

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           ++  +L   GLD+ +   V   D     F  +  + +  IGR AR   +   +   T   
Sbjct: 519 MIATDLASRGLDVKDIKFVVNYD-----FPNTIETYVHRIGRTARAGATGTSISFLTREN 573

Query: 696 S 696
           +
Sbjct: 574 A 574


>gi|260663734|ref|ZP_05864622.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
 gi|260551785|gb|EEX24901.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
          Length = 495

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 15/193 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVE---IRSARTQVEDVYDEIN 576
            T++ SAT    E+++     +       I+   L    V+   +R+   +  D+   + 
Sbjct: 179 QTLLFSAT-MPPEIKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRMI 237

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                 L  ++   TKR  ++L+  L  R      +H ++    R +I+R  + G  D+L
Sbjct: 238 DVQDPDL-TIVFGRTKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDIL 296

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLDI     V   D           S +  IGR  R  +  V L   T  + 
Sbjct: 297 VATDVAARGLDISGVTHVYNYD-----IPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEM 351

Query: 697 IQ-LAIDETTRRR 708
                I++ TR R
Sbjct: 352 NYLHEIEKLTRAR 364


>gi|58580393|ref|YP_199409.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58424987|gb|AAW74024.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 484

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 77/227 (33%), Gaps = 31/227 (13%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC---------MDNRPLRF-EEWNCL 521
            +D        +SG+          + + GF LPS           D + L F   +   
Sbjct: 160 LIDHIERRSVDLSGIEVLILDEADRMLDMGF-LPSIKRILTKLPRQDRQTLLFSATFEEN 218

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--IRSARTQVE-DVYDEINLA 578
                          LE  +  +  Q+  P+  V   +   +       + D+   +   
Sbjct: 219 IKQLA----------LEFMRNPMQIQVT-PSNTVAESITHRVHPVDGARKRDLLLHLLAQ 267

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             +  + L+   TK  ++ L  +L +  I+   +H      +R+  + D + G+  VLV 
Sbjct: 268 DSR-EQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVA 326

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            ++   G+DI +   V   D             +  IGR  RN ++ 
Sbjct: 327 TDIAARGIDIDQLPKVINYDLPMV-----AEDYVHRIGRTGRNGSTG 368


>gi|50955710|ref|YP_062998.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952192|gb|AAT89893.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 399

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 7/140 (5%)

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I   A +  + L+   T+  AE L + L +  I    +H ++    R   +  L  G+  
Sbjct: 246 IEQLADRDGKTLIFARTRAFAEMLADNLEDAGIPAVSLHGDLNQSRRTRNLAQLTSGRVS 305

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+ + +  LV   DA  E       + +   GR  R      ++    I 
Sbjct: 306 VLVATDVAARGIHVDDIDLVIQADAPDE-----YKTYLHRSGRTGRAGKRGTVVTL--IP 358

Query: 695 KSIQLAIDETTRRREKQLEH 714
           +  Q  + E  +R E + + 
Sbjct: 359 RQRQRRMGELLQRAEIEADF 378


>gi|15672332|ref|NP_266506.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723219|gb|AAK04448.1|AE006272_2 ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326405930|gb|ADZ63001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 547

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 100/252 (39%), Gaps = 11/252 (4%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLA 578
              T++ SAT P   +    + +   + I+     +    ++    +T+  + +D +   
Sbjct: 174 ARQTLLFSATMPNDIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRL 233

Query: 579 --AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              ++    ++   TKR  ++L   L  R  R   MH ++   +R+ ++RD + G  DVL
Sbjct: 234 LDVERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLD+     V   D       + + S +  IGR  R   S   + +      
Sbjct: 294 VATDVAARGLDVSGVTHVYNYDIT-----QDQESYVHRIGRTGRAGKSGRSVTFVSYNEM 348

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
               AI+  T++  K L+   K      S+   + +V+  +  + A       D Q  SL
Sbjct: 349 GYLRAIENMTKKPMKGLKPPTKEEAYQASLSVAMDDVLRDLSDDSAKAKLAKFDKQAASL 408

Query: 756 SKKKGKAHLKSL 767
            +K     L +L
Sbjct: 409 LEKFDAKELVAL 420


>gi|323449738|gb|EGB05624.1| hypothetical protein AURANDRAFT_2696 [Aureococcus anophagefferens]
          Length = 395

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 6/118 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
           R+++    KRM + L   L     +R   +H +   ++R + +   ++G   VL+  ++ 
Sbjct: 224 RVIVFANAKRMCDQLERTLPRAVGVRCAAIHGDKDQMQRTQTLNAFKVGICPVLIATDVA 283

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
             GLDI E   V   D     F  +    +  IGR  R           T     + A
Sbjct: 284 ARGLDIKEVKAVVCYD-----FPNNVEDYVHRIGRTGRAGAKGNAYTFFTQRDDRKAA 336


>gi|217976993|ref|YP_002361140.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
 gi|217502369|gb|ACK49778.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
          Length = 448

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 15/195 (7%)

Query: 522 RPTTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           R   +  SAT         +  L+    + V  + +    V+  V       + + + D 
Sbjct: 180 RRQNLFFSATMPTEIAKLAADLLKNPAQVSVTPVAKTADRVEQQVLFVETHRKRDILVDL 239

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +  A     R ++   TKR A+ + ++L    +    +H      +R   +   R G+  
Sbjct: 240 LADAKMA--RTIIFTRTKRGADKVAQHLEVCGVSAAAIHGNKSQSQRERSLASFRAGRVR 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
            LV  ++   G+D+     V   D           + +  IGR AR     V I   D  
Sbjct: 298 ALVATDIAARGIDVDGVTHVVNFD-----LPEVPEAYVHRIGRTARAGAEGVAISLCDGA 352

Query: 694 TKSIQLAIDETTRRR 708
            + +   I+  TR R
Sbjct: 353 ERDLLRNIERLTRLR 367


>gi|254457791|ref|ZP_05071219.1| dead/deah box helicase domain protein [Campylobacterales bacterium
           GD 1]
 gi|207086583|gb|EDZ63867.1| dead/deah box helicase domain protein [Campylobacterales bacterium
           GD 1]
          Length = 453

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 11/177 (6%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYD 573
            +   R  T++ SAT     ++  + +  E +      T   +   E R          D
Sbjct: 170 SFTKKRKQTLLFSATYTDEIMDISKNLQHEAVSVKTTSTETANNITE-RFYEVNDHQKLD 228

Query: 574 EINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            I       +   +++   TK  A++L E L ++ I    +H +++  ER +++      
Sbjct: 229 TIVNILSNFKPENVIIFTNTKIEAKELAENLLKKKIDALAIHGDLEQYERNDVLVQFANR 288

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              VL+  ++   GLDI E  +V   D           +    IGR  R     +  
Sbjct: 289 SCPVLIATDVAARGLDIKEMSMVINYD-----LPHGDETYTHRIGRTGRAGQDGLAF 340


>gi|22331253|ref|NP_188872.2| PMH2 (putative mitochondrial RNA helicase 2); ATP binding /
           ATP-dependent helicase/ helicase/ nucleic acid binding
           [Arabidopsis thaliana]
 gi|75335516|sp|Q9LUW5|RH53_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 53
 gi|9293867|dbj|BAB01770.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|17064852|gb|AAL32580.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|20259816|gb|AAM13255.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|332643101|gb|AEE76622.1| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
          Length = 616

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 8/127 (6%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +G + ++   TKR A+ L+ Y   R+ +   +H ++   +R   +   R G F++LV  
Sbjct: 347 AKGGKCIVFTQTKRDADRLS-YALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVAT 405

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   GLD+P   L+            +  + +   GR  R       +   +  +S   
Sbjct: 406 DVAARGLDVPNVDLII-----HYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQS--R 458

Query: 700 AIDETTR 706
           A+    R
Sbjct: 459 AVKIIER 465


>gi|307135861|gb|ADN33729.1| helicase [Cucumis melo subsp. melo]
          Length = 413

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 18/198 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 DWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +  T  + +   I
Sbjct: 377 GVAINFVTTEDERMLFDI 394


>gi|154418331|ref|XP_001582184.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121916417|gb|EAY21198.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 640

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 17/186 (9%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIV--EQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT P + E      L+    I+V    ++ P   ++  + + +   +   +   
Sbjct: 280 QTLMFSATFPHTVERIARKLLQNSIEIVVGLRNVVTPN--INQSILVTNEDNKFNSLLKI 337

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +     QG   L+   T+  AEDL   L +    V  +H  + + +R  I+ D R G+F 
Sbjct: 338 LGDYTTQGQ-ALVFTNTQDRAEDLFGKLNKSGYSVGLLHGSMDSPDRNSILHDFREGRFS 396

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DI     V   DA        +   +  +GR  R           T  
Sbjct: 397 VLVLTSVGARGIDIASIICVINYDA-----PDHEADYVHRVGRTGRAGKKGYAFTFVTDK 451

Query: 695 KSIQLA 700
                A
Sbjct: 452 DKTAAA 457


>gi|124802784|ref|XP_001347593.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
 gi|23495176|gb|AAN35506.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
          Length = 917

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 72/190 (37%), Gaps = 18/190 (9%)

Query: 524 TTIVVSATPGSWELEQCQGII--------VEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            TI  +AT      E  +  +        ++Q       +   V+   A+++  ++  +I
Sbjct: 719 QTIFFTATFSDKLKEHIEKYMSTPYVYLNIKQKRETKNRIREIVKYVPAKSKFIELLKDI 778

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +   Q    ++ V  +    ++  +L  +   V Y+H ++  + R  +  + R     +
Sbjct: 779 KILKGQ---AIIFVELRHSINNVFNFLKTKGYNVDYLHGKMSQIRRQSVFENFRKKSVQI 835

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           L+  ++   GLD P+  LV   D   E         +  IGR  R       I Y ++  
Sbjct: 836 LIATSIAARGLDFPDLELVINYDLPSE-----FEQYMHRIGRTGRIGKGGMAINYFNSSN 890

Query: 695 KS-IQLAIDE 703
           K+ I   ID 
Sbjct: 891 KNIIDKLIDH 900


>gi|54307767|ref|YP_128787.1| ATP-dependent RNA helicase SrmB [Photobacterium profundum SS9]
 gi|46912190|emb|CAG18985.1| putative ATP-dependent RNA helicase SrmB [Photobacterium profundum
           SS9]
          Length = 419

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 83/209 (39%), Gaps = 13/209 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEI---- 575
           R  +++ SAT  G    E  + I+ E + +          +I     + +D+  ++    
Sbjct: 179 RRQSLLFSATLEGKGVREFSETILKEPVEVNSAPSRRERKKIHQLYLRCDDMDHKLALLE 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +   Q  R ++ V T+     L + L   N++  ++  E+  L R   I   R G  ++
Sbjct: 239 QILKHQAERSIVFVKTRDRLAMLRDQLASMNVKCSWIQGEMAQLSRNNAISRFRDGDVNI 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   G+D+P+   V   D  +     +    +  IGR AR     + +       
Sbjct: 299 LIATDVAARGIDLPDISHVINFDMPR-----TADVYLHRIGRTARAGKKGIAISLVEAHD 353

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQS 724
             Q  I+  +R  E+++     + + P S
Sbjct: 354 --QAMIERVSRYMEEEVPERFINGLRPAS 380


>gi|91976935|ref|YP_569594.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
 gi|91683391|gb|ABE39693.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
          Length = 500

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 15/196 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE---------DVYDE 574
            T+  +AT    E+ +     +    +          +   ++QV          +    
Sbjct: 179 QTLFFTAT-MPPEIRRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRR 237

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +  AA      ++    KR    L + L +    V  +H ++    R   +   R G+  
Sbjct: 238 LIRAATDLQNAIIFCNRKREVALLAKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELP 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   GLDIPE   V   D             +  +GR  R       +     +
Sbjct: 298 ILVASDVAARGLDIPEVSHVFNFDV-----PHHPDDYVHRVGRTGRAGRLGTAISIVAPS 352

Query: 695 KSIQLAIDETTRRREK 710
               +A  E    +E 
Sbjct: 353 DQKSIAAIEKLIGKEI 368


>gi|319950441|ref|ZP_08024356.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4]
 gi|319435905|gb|EFV91110.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4]
          Length = 679

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R      ++ ++    R   I  L+ G+ D+LV  ++   
Sbjct: 291 MIMFVRTKSATEELAERLRARGFSAAPINGDIPQNLRERTIEALKDGRTDILVATDVAAR 350

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE 703
           GLD+P    V   D           S I  IGR  R   S   +L+     + +   I+ 
Sbjct: 351 GLDVPRISHVVNYD-----IPHDTESYIHRIGRTGRAGRSGHALLFVTPRERRLLSQIER 405

Query: 704 TTRR 707
            TR+
Sbjct: 406 ATRQ 409


>gi|269469155|gb|EEZ80700.1| ATP-dependent RNA helicase RhlE [uncultured SUP05 cluster
           bacterium]
          Length = 434

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 7/177 (3%)

Query: 522 RPTTIVVSATPGSWELEQCQGII-----VEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           +  T++ SAT      +  + ++     V    R T +      I       +       
Sbjct: 178 KRQTLMFSATFSDEIRKLAKSLVHNPVEVSTTPRNTTVKSVKQWIHPVDKSKKQALLTKL 237

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +      ++L+   TK  A  +   L +R I    +H       R   + D + GK +VL
Sbjct: 238 IKDHSWYQVLVFSRTKHGANRIATQLGKRGITAAAIHGNKSQGARTRALADFKDGKVNVL 297

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           V  ++   G+DI E   V   D             I   GRA     +  ++ AD +
Sbjct: 298 VATDIAARGIDIIELPHVVNFDLPHV--PEDYVHRIGRTGRAGSKGEAISLVSADEV 352


>gi|238061200|ref|ZP_04605909.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
           protein [Micromonospora sp. ATCC 39149]
 gi|237883011|gb|EEP71839.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
           protein [Micromonospora sp. ATCC 39149]
          Length = 557

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 7/136 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   I  A  +GL  ++   TKR A+ + E L  R   V  +H ++    R   +R  R
Sbjct: 284 EIVARILQAEGRGL-TMIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFR 342

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            GK D+LV  ++   GLD+     V   D         + +    IGR  R   + V + 
Sbjct: 343 AGKIDILVATDVAARGLDVSGVTHVINYDC-----PEDQDTYTHRIGRTGRAGATGVAVT 397

Query: 689 YADTITKSIQLAIDET 704
           + D         ID+T
Sbjct: 398 FVDWDDMPRWRIIDKT 413


>gi|194367446|ref|YP_002030056.1| ATP-dependent RNA helicase RhlB [Stenotrophomonas maltophilia
           R551-3]
 gi|194350250|gb|ACF53373.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 574

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 93/304 (30%), Gaps = 39/304 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+              +  +             + + GF      D R L   
Sbjct: 141 TPGRLIDYV----------KQHKVVSLHACEICVLDEADRMFDLGFI----KDIRFLLRR 186

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIR---SARTQVED 570
                   T++ SAT     LE     + E    ++    +    V  R    A  +   
Sbjct: 187 MPERTTRQTLLFSATLSHRVLELAYEHMNEPQKLVVEAETITAARVRQRIYFPADDEKIP 246

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +   ++ G R ++ V TK   E +   L +   RV  +  +V   +R  ++   + 
Sbjct: 247 LLLGLLSRSE-GARTMVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+ ++LV  ++   GL I     V   D             +  IGR AR          
Sbjct: 306 GQLEILVATDVAARGLHIDGIKYVYNYD-----LPFDAEDYVHRIGRTARLGEEG----- 355

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                +I  A +           +  +  I  + V +   E++ P+   +        D 
Sbjct: 356 ----DAISFACERYAMGLPDIEAY-IEQKIPSEPVTK---ELLTPLPRPERPAPAAGEDG 407

Query: 751 QQLS 754
           +   
Sbjct: 408 EDNE 411


>gi|193606171|ref|XP_001946134.1| PREDICTED: ATP-dependent RNA helicase vasa, isoform A-like
           [Acyrthosiphon pisum]
          Length = 641

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 16/176 (9%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V  KR A+ +  +L E N     +H + +  ER + +RD +  K  VLV   +   
Sbjct: 478 TIVFVEQKRQADFIAAFLSELNYPTTSIHGDREQPEREKALRDFKTKKMKVLVATAVAAR 537

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS-IQLAID 702
           GLDI     V   D  K     +    +  IGR  R  NS   + + D    S +   + 
Sbjct: 538 GLDIMGVTTVVNFDLPK-----TIEEYVHRIGRTGRLGNSGRAVSFYDPDNDSAMAPYLV 592

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
            T +R           NI P+ + +   EV +P+   +    N+++ ++ +    +
Sbjct: 593 NTLKR--------ADQNI-PEFLSKYSGEVHEPLNQFNDIRPNVTVTSEYIQEEDE 639


>gi|239637375|ref|ZP_04678357.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
 gi|239596975|gb|EEQ79490.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
          Length = 509

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 79/198 (39%), Gaps = 25/198 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDVYDEINLA---- 578
            T++ SAT     + +    +V+Q ++   ++     E+  +  Q+++ Y  +       
Sbjct: 177 QTMLFSAT-----MPKAIQTLVQQFMKTPKIIKTMNNEM--SDPQIDEYYTIVKELEKFD 229

Query: 579 -------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                    Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  
Sbjct: 230 TFTNFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKND 289

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
           + D+LV  ++   GLDI     V   D       +   S    IGR  R     + + + 
Sbjct: 290 QIDILVATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFV 344

Query: 691 DTITKSIQLAIDETTRRR 708
           + I       I++   RR
Sbjct: 345 NPIEMDYIRQIEDANNRR 362


>gi|115398415|ref|XP_001214799.1| hypothetical protein ATEG_05621 [Aspergillus terreus NIH2624]
 gi|121737771|sp|Q0CL13|DBP3_ASPTN RecName: Full=ATP-dependent RNA helicase dbp3
 gi|114192990|gb|EAU34690.1| hypothetical protein ATEG_05621 [Aspergillus terreus NIH2624]
          Length = 493

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 67/192 (34%), Gaps = 17/192 (8%)

Query: 522 RPTTIVVSAT--PGSWELEQCQGIIVEQII---------RPTGLVDPPVEIRSARTQVED 570
           +  T++ +AT  P   EL          +          R    +   VE+     +   
Sbjct: 257 KRQTVMFTATWPPVVRELASTFMSSPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKEGR 316

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +    +   ++L   L K+ A  +  +L  R  +V  +H ++   ER   +   + 
Sbjct: 317 LVQLLKQHQRGAEKVLAFCLYKKEATRIERFLQSRGFKVAGIHGDLSQQERFRSLDAFKT 376

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILY 689
           G   VLV  ++   GLDIP   LV  +      F  +    +  IGR  R       I  
Sbjct: 377 GAATVLVATDVAARGLDIPAVKLVINV-----TFPLTVEDYVHRIGRTGRAGAEGHAITL 431

Query: 690 ADTITKSIQLAI 701
                K+   A+
Sbjct: 432 FTETDKAQSGAL 443


>gi|84997373|ref|XP_953408.1| DEAD-box family helicase [Theileria annulata strain Ankara]
 gi|65304404|emb|CAI76783.1| DEAD-box family helicase, putative [Theileria annulata]
          Length = 570

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 114/312 (36%), Gaps = 36/312 (11%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ-------GI 543
                 L E GFR      +  L+  ++      T++ SAT      E           +
Sbjct: 242 MDEADKLLELGFR------DECLQVLKYCNRNRQTMLFSATLTEETKELVSLSLVNPVYV 295

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
            V+   + +  ++  + +       E     +        + +L   TKR A  +     
Sbjct: 296 KVDDPTKVSRTLEFEMMMIPKEEYREACALYL-CTKYSKDKTILFFQTKRSAHRMFLIFN 354

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
             N++   +H  +   +R E +   + G+ D L+   L   GLDIP    V  +D     
Sbjct: 355 LLNMKCGELHGNLSQSKRFESVERFKNGEIDYLLASELASRGLDIPGVKTVINVD----- 409

Query: 664 FLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTRRREKQLEHNKKHNIN 721
                T  I  +GR AR  +    + LY D     ++L + +T+      L  NKK  + 
Sbjct: 410 LPTDITRYIHRVGRTARMGSHGKAITLYVDEQRSQVKLFLKKTSD-IGATLSKNKKK-VT 467

Query: 722 PQSVKE------KIMEVIDPILLEDAATTNISI-DAQQLSLSKKKGKAHL---KSLRKQM 771
             ++ +      ++ E I  +LLE+    +I + DA   +   +  +          K+M
Sbjct: 468 SATLNKYKTKIDELEEKIKELLLEENIEKDIKMCDATLKTHGDQDREKRKWFRSKKDKKM 527

Query: 772 HLAADNLNFEEA 783
             A+    FEEA
Sbjct: 528 --ASKE-EFEEA 536


>gi|332994271|gb|AEF04326.1| ATP-dependent RNA helicase SrmB [Alteromonas sp. SN2]
          Length = 414

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 93/250 (37%), Gaps = 42/250 (16%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            + + GFR    + N+      W   R   ++ SAT         +G  V Q  +     
Sbjct: 158 RMLDMGFR---TIVNQIASEARW---RKQNMLFSATL--------EGGGVSQFAKDILQN 203

Query: 556 DPPVEIRSAR------TQVEDVYDEINLAA--------QQGLRILLTVLTKRMAEDLTEY 601
              +E   +R       Q   + D++N           +Q    ++ V T+   + L +Y
Sbjct: 204 PEVIEAFPSRKEKNKIHQWYHLADDLNHKKALLVHILKEQATTTVVFVKTRERLQMLKDY 263

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L  ++I V ++  E+   +R+  +   + G+  VL+  ++   G+D+PE   V   D  +
Sbjct: 264 LASQDIMVCWLQGEMPQDKRMAALTRFKSGEVPVLLATDVAARGIDVPEVSHVINFDMPR 323

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILY------ADTITKSIQLAIDETTRRREKQLEH- 714
           +         +  IGR  R       +        + ITK+ +   +E  + R       
Sbjct: 324 K-----ADVYVHRIGRTGRAGAKGTAISLIEAHDFEFITKAARYT-EEPIKARVISELRP 377

Query: 715 -NKKHNINPQ 723
            NK   I P+
Sbjct: 378 QNKAPKIGPR 387


>gi|304310488|ref|YP_003810086.1| ATP-dependent RNA helicase [gamma proteobacterium HdN1]
 gi|301796221|emb|CBL44429.1| ATP-dependent RNA helicase [gamma proteobacterium HdN1]
          Length = 527

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 26/194 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYDEINLAAQQG 582
            T++ SAT     +E   G +  ++ R    +   +E +  +  ++E      +  A + 
Sbjct: 181 QTMLFSAT-----MEGVVGALARKLTRDPQRI--EIEKKPEQQAKIEQKLMMADDLAHKN 233

Query: 583 ------------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                        + ++   TKR AEDL+  L +    V  +H ++    R   +  LR 
Sbjct: 234 RLLGALLRDESLNQAVVFTATKRAAEDLSNTLRDEGFSVEALHGDMHQKLRNRTLTKLRQ 293

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G+  +LV  ++   G+D+     V   D  ++         +  IGR  R   +   +  
Sbjct: 294 GRIGILVATDVAARGIDVVGISHVINYDPPRQV-----EDYVHRIGRTGRAGRTGTAVTL 348

Query: 690 ADTITKSIQLAIDE 703
           A+   + I   I+ 
Sbjct: 349 AEFKERRIIRDIER 362


>gi|256076508|ref|XP_002574553.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238659762|emb|CAZ30786.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 463

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 81/219 (36%), Gaps = 23/219 (10%)

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGL 554
           RLPS  +           +    +++SAT     LE  Q +    +        +  + L
Sbjct: 195 RLPSHTN-----LNNKKSVNCQIVIISATMLKEHLELFQNLTSNPVCVLVPRDELSLSDL 249

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
               +++ S   + E + D  +       + ++ V T+R  E L   L      V   H 
Sbjct: 250 QQFYIDVGSEEWKFEALNDLFSSV--CVSQTVVFVNTRRKVEWLASQLKREGFTVAAAHG 307

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           ++   +R  +++  R G+  +L+  ++   G+D+   GLV   D        + +  +  
Sbjct: 308 DLDQSQRESVMKQFRSGECRILISSDMWARGIDVQTVGLVVNFD-----LPMNTSEYLHR 362

Query: 675 IGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           IGR+ R   + + +      +  +  ++        Q+ 
Sbjct: 363 IGRSGRFGRTGLAVSFIANAEERKQLLEICNYY---QIA 398


>gi|288554498|ref|YP_003426433.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288545658|gb|ADC49541.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 502

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 79/200 (39%), Gaps = 21/200 (10%)

Query: 524 TTIVVSAT-PGSWEL-------EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT P   E        E     +  + +    +    VE+   + + + +   I
Sbjct: 177 QTLLFSATMPKRIEKLAQTFMSEPKLIAVKSKEVTMENIEQQYVEVHERQ-KFDTLCRFI 235

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +         ++   TKR  ++L+E L +R  R   +H ++   +R  ++R  + G  DV
Sbjct: 236 D--IHTPELAIVFGRTKRRVDELSEALTKRGYRAEGIHGDLNQAKRDSVLRKFKNGLVDV 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   S   + +A    
Sbjct: 294 LVATDVAARGLDITGVTHVYNFD-----LPQDPESYVHRIGRTGRAGKSGLALTFATPRE 348

Query: 695 KSIQLAIDETTR----RREK 710
           +     I++ ++    RRE 
Sbjct: 349 REHVKTIEQVSKKKMTRREV 368


>gi|224285260|gb|ACN40356.1| unknown [Picea sitchensis]
          Length = 411

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 16/189 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSARTQVEDVYDEI 575
              V SAT  P + E+ +       +I+         G+    V +     +++ + D  
Sbjct: 213 QVGVFSATMPPEALEITRKFMNNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLY 272

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A    + ++ + T+R  + LT+ +  R+  V   H ++    R  I+R+ R G   V
Sbjct: 273 ETLAIT--QSVIFINTRRKVDMLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRV 330

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           L+  +LL  G+D+ +  LV   D           + +  IGR+ R     V I +     
Sbjct: 331 LITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRKGVAINFITKDD 385

Query: 695 KSIQLAIDE 703
           + +   I  
Sbjct: 386 ERMLQDIQR 394


>gi|220678758|emb|CAX13889.1| novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 43 (DDX43) [Danio rerio]
 gi|220678952|emb|CAX13571.1| novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 43 (DDX43) [Danio rerio]
          Length = 719

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 18/172 (10%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------EDVYD 573
            T++ SAT  PG   L +        +   T        + + +  V        +D   
Sbjct: 458 QTVMTSATWPPGVRRLAKSYLKDPMMVYVGT---LDLAAVNTVQQTVLFVQEDEKKDYVF 514

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +     +   ++L+ V  K  A+DL+  L  + I V+ +H + +  +R E ++D + G+ 
Sbjct: 515 DFIHRMEPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRV 574

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV  +L   GLD+ +   V   D     F R+    +  +GR  R   S 
Sbjct: 575 RILVATDLASRGLDVHDITHVFNYD-----FPRNVEEYVHRVGRTGRAGRSG 621


>gi|166710445|ref|ZP_02241652.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 574

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+              +  +             + + GF      D R L   
Sbjct: 141 TPGRLIDYV----------KQHKVVSLHACEICVLDEADRMFDLGFI----KDIRFLLRR 186

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIR---SARTQVED 570
                   T++ SAT     LE     + E    ++    +    V  R    +  + + 
Sbjct: 187 MPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQT 246

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +   ++ G R ++ V TK   E +   L     RV  +  +V   +R  ++   + 
Sbjct: 247 LLLGLLSRSE-GARTMVFVNTKVFVERVARILERHGYRVGVLSGDVPQKKRESLLNRFQK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G+ ++LV  ++   GL I     V   D             +  IGR AR       I +
Sbjct: 306 GQLEILVATDVAARGLHIDGVKYVYNYD-----LPFDAEDYVHRIGRTARLGEEGDAISF 360

Query: 690 ADT 692
           A  
Sbjct: 361 ACE 363


>gi|71897029|ref|NP_001025896.1| probable ATP-dependent RNA helicase DDX52 [Gallus gallus]
 gi|60098635|emb|CAH65148.1| hypothetical protein RCJMB04_4d17 [Gallus gallus]
          Length = 603

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 8/136 (5%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H++    +R  ++   R GK
Sbjct: 397 MRELVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDNVVHSFRAGK 456

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     +V   D        S    I  IGR  R  ++ K + +  
Sbjct: 457 IWVLICTALLARGIDFKGVNMVINYD-----LPTSAVEYIHRIGRTGRAGHTGKAVTFFT 511

Query: 692 TITKSIQLAIDETTRR 707
              K +  +I    +R
Sbjct: 512 EDDKPLLRSIANVIQR 527


>gi|332263067|ref|XP_003280577.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Nomascus
           leucogenys]
          Length = 578

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 11/120 (9%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 391 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 450

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR  R+ N+ +          I  A DE+
Sbjct: 451 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGRSGNTGIATTF------INKACDES 499


>gi|118586395|ref|ZP_01543844.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
 gi|118433182|gb|EAV39899.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
          Length = 509

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 76/192 (39%), Gaps = 13/192 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
            T++ SAT    ++++     +E      I   GL    V+     T+  + +D +    
Sbjct: 164 QTLLFSAT-MPDDIKKIGVKFMEDPEEVHIASKGLTIDLVDQYLVNTREYEKFDAMTRLF 222

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +Q    ++   TKR  ++LT+ L  R  +   +H ++    R+  +R  + G+   LV
Sbjct: 223 DVEQPELAIVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLV 282

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R  +  V + +       
Sbjct: 283 ATDVAARGLDISGVTHVYNYDV-----PQDPESYVHRIGRTGRAGHHGVSVTFVVRGEID 337

Query: 697 IQLAIDETTRRR 708
              AI++   +R
Sbjct: 338 YLRAIEKLINKR 349


>gi|328870114|gb|EGG18489.1| ATP-dependent RNA helicase [Dictyostelium fasciculatum]
          Length = 1703

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 82/243 (33%), Gaps = 22/243 (9%)

Query: 471  LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSA 530
            + VDE+     Q  G    D   K  LA   +RL +       +  E       TI  SA
Sbjct: 1458 IVVDEADSMFTQGKGF---DDDMKKILAPVEYRLKN-------KHVEGYKSIYATIC-SA 1506

Query: 531  TPGSWELEQCQGIIVEQIIRPTGLV---DPPVEIRSARTQVEDVYDEINLAAQ--QGLRI 585
            T     L   Q +    +   T  +      +E +    Q  D ++ +  A +  Q  R+
Sbjct: 1507 TLTQQLLSNVQSLFPNVVKLATPTIHKSLNTLEQQFISVQGGDKHEALMRAIKPSQSKRV 1566

Query: 586  LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
            L+   +         +L E       +H E+    R +  R     +  +LV  ++   G
Sbjct: 1567 LVFCNSPNSCRSTEYFLTENGFNATSLHGEIPPKTRSKNWRQFLNNEKSILVSTDIASRG 1626

Query: 646  LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDET 704
            +D+     V I D     F  +    +  IGR AR      V        + +  AI   
Sbjct: 1627 IDVSSVDHVIIFD-----FPSNPIDYLHRIGRTARAGKKGTVTCIIAKKDQVLANAIQAA 1681

Query: 705  TRR 707
             +R
Sbjct: 1682 LKR 1684


>gi|328956669|ref|YP_004374055.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
 gi|328672993|gb|AEB29039.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
          Length = 533

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 92/257 (35%), Gaps = 21/257 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT  P    +        E + I+ T + D  +E    R +  + +D +     
Sbjct: 181 QTLLFSATMPPAIKRIGVRFMSNPEHVQIKATTMSDSLIEQFFVRCKDFEKFDIMTRLFD 240

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L   L  R  R   +H ++   +R+ +++  + GK D+LV 
Sbjct: 241 VQTPELTIIFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLKSFKTGKLDILVA 300

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI     V   D       +   S +  IGR  R     V +   T  +   
Sbjct: 301 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKEGVSVTFITPNEMGY 355

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
           L + E             K  + P        E  +  +          IDA  L   +K
Sbjct: 356 LRVIEDL----------TKKTMTPLRPPTN-AEAFEGQIKASIDEVGSIIDANGLDRYEK 404

Query: 759 KGKAHLKSLRKQMHLAA 775
                L++   +   AA
Sbjct: 405 AAAQLLETYTAEDLAAA 421


>gi|325918892|ref|ZP_08180966.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
           35937]
 gi|325534878|gb|EGD06800.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
           35937]
          Length = 636

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     K +  +I+ 
Sbjct: 311 GLDVERVSHVLNYD-----IPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIER 365

Query: 704 TTRR 707
            TR+
Sbjct: 366 ATRQ 369


>gi|308157881|gb|EFO60870.1| Eukaryotic initiation factor 4A [Giardia lamblia P15]
          Length = 428

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +K   + L   L ++      +H++V   +R   + + R GK  +LV  +LL  G
Sbjct: 306 IIFCNSKHTVDWLYNALRKQKHPCERIHADVPAFDRETTVANFRAGKTRLLVSTDLLARG 365

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
            D+ +   V   D     F R   S +   GR  R     + +    +T   Q  +D+  
Sbjct: 366 FDVQQVTFVCNYD-----FPRDPHSYMHRAGRCGRFGRKGLSVSL--LTAENQKCMDDVV 418

Query: 706 RRREKQLE 713
           +R + +LE
Sbjct: 419 QRYKIELE 426


>gi|307824650|ref|ZP_07654874.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307734304|gb|EFO05157.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 596

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 78/186 (41%), Gaps = 8/186 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK    +L E L  R      ++ ++    R   I +L+ GK D+L+  ++   
Sbjct: 251 MIIFVRTKTSTVELAEKLEARGYSAAAINGDMSQALRERAIANLKNGKLDILIATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     +++   I++
Sbjct: 311 GLDVDRITHVVNYD-----IPYDTESYVHRIGRTGRAGRTGDAILFIAPRERNLLANIEK 365

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA--TTNISIDAQQLSLSKKKGK 761
            T+++ +++       IN + +      + D +  E+ +  +  +    Q+ +++  +  
Sbjct: 366 ATKQKVEEMGLPSTEVINNKRISRFKQNITDTLAAEELSFFSQLLEQYQQEHNVTALEIA 425

Query: 762 AHLKSL 767
           + L  L
Sbjct: 426 SALAKL 431


>gi|294142501|ref|YP_003558479.1| ATP-dependent RNA helicase DeaD [Shewanella violacea DSS12]
 gi|293328970|dbj|BAJ03701.1| ATP-dependent RNA helicase DeaD [Shewanella violacea DSS12]
          Length = 617

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 67/194 (34%), Gaps = 11/194 (5%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINL 577
            +    + SAT            + E +   I  T      +E R  +    +  + +  
Sbjct: 179 KQRQLALFSATMPEQIKRVANKYLTEPVHVKIAATTATVETIEQRFVQVSQHNKLEALVR 238

Query: 578 A--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    I++ V T+    +L E L  R      +H ++    R   +  L+ G  D+
Sbjct: 239 VLEVESTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGSLDI 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           L+  ++   GLD+   G V   D           + +  IGR  R   S   IL+     
Sbjct: 299 LIATDVAARGLDVERIGHVINYD-----IPYDTEAYVHRIGRTDRAGRSGMAILFVTHRE 353

Query: 695 KSIQLAIDETTRRR 708
             +   I+  T+ R
Sbjct: 354 MRMLRTIERATKSR 367


>gi|50289935|ref|XP_447399.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661253|sp|Q6FQU5|DHH1_CANGA RecName: Full=ATP-dependent RNA helicase DHH1
 gi|49526709|emb|CAG60336.1| unnamed protein product [Candida glabrata]
          Length = 507

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 16/182 (8%)

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           LP    ++ L F     L     +V      +E+   + + ++ I +        VE R 
Sbjct: 201 LPKA--HQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQ----YYAFVEERQ 254

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
               +  ++ ++ +      + ++   +    E L + + +      Y H+ +K  +R +
Sbjct: 255 KLHCLNTLFSKLQI-----NQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQDRNK 309

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R GK   LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 310 VFHDFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD-----FPKTAETYLHRIGRSGRFGH 364

Query: 684 SK 685
             
Sbjct: 365 LG 366


>gi|328779158|ref|XP_001122489.2| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
           mellifera]
          Length = 616

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 86/241 (35%), Gaps = 35/241 (14%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
            + + GF         P   +    +RP   T++ SAT         +  + + I    G
Sbjct: 268 RMLDMGFE--------PQIRKIVEQIRPDRQTLMWSATWPKEVRNLAEEFLTDYIQINIG 319

Query: 554 LVD-----------PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
            +               E      ++  + +EI+   +   + ++ V TKR  +D+T  +
Sbjct: 320 SLQLAANHNILQIVDVCEEYEKEGKLMKLLEEISNEPEN--KTIIFVETKRKVDDITRAI 377

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
                +   +H +    ER  ++   R  +  +LV  ++   GLD+ +   V  LD    
Sbjct: 378 NRYGWQAIGIHGDKSQQERDYVLNQFRNSRSAILVATDVAARGLDVEDVKFVINLD---- 433

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
            +  +    +  IGR  R+  +    YA     +   A D        Q+    K  +NP
Sbjct: 434 -YPSNSEDYVHRIGRTGRSQRTGTA-YAFFTPGNAHKASD------LIQVLEEAKQVVNP 485

Query: 723 Q 723
           +
Sbjct: 486 K 486


>gi|254360747|ref|ZP_04976895.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica PHL213]
 gi|153091317|gb|EDN73291.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica PHL213]
          Length = 411

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++   TK   E++ +YL     RV  +  ++   +R+ ++ +   G  D+LV  ++ 
Sbjct: 254 ERCMIFANTKHKCEEIWQYLSADGHRVGMLTGDIPQKKRLSLLDNFTKGNLDILVVTDVA 313

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAI 701
             GL IP+   V   D         K   +  IGR  R   S   I +A         AI
Sbjct: 314 ARGLHIPDVTHVFNYD-----LPDDKEDYVHRIGRTGRAGESGHSISFACERYAVNLPAI 368

Query: 702 DE 703
           +E
Sbjct: 369 EE 370


>gi|91082293|ref|XP_973907.1| PREDICTED: similar to DEAD-box helicase Dbp80 [Tribolium castaneum]
 gi|270007465|gb|EFA03913.1| hypothetical protein TcasGA2_TC014047 [Tribolium castaneum]
          Length = 458

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 79/202 (39%), Gaps = 16/202 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII----RPTGLVDPPVE--IRSARTQVE-DVYDEIN 576
             +  SAT     +E  + I+ + I     R    +D   +  ++ +  Q + +    I 
Sbjct: 248 QMMFFSATYDQQIMEFAEMIVPDSITIRLKREEESLDNIQQYYVKCSGPQEKYNAVTNIY 307

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G   ++   T+R A  L E + +    V  +  ++   +RI ++   R G+  VL
Sbjct: 308 GTVGVGQ-AIIFCHTRRTASWLAEKMSKDGHAVAVLTGDLTVEQRINVLDRFRSGQEKVL 366

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTS-LIQTIGRAARNVNSKVILYADTITK 695
           +  N+L  G+D+ +  +V   D   +   ++     +  IGR  R     + +      +
Sbjct: 367 ITTNVLSRGIDVEQVTIVVNFDLPIDMQGKADCDTYLHRIGRTGRFGKQGIAINLVDSQE 426

Query: 696 SIQLAIDETTRRREKQLEHNKK 717
           ++ +        R+ +   N+K
Sbjct: 427 AMNIC-------RDIEKHFNRK 441


>gi|77463091|ref|YP_352595.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1]
 gi|77387509|gb|ABA78694.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1]
          Length = 518

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 82/262 (31%), Gaps = 39/262 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++     LL       T  QI  +   D      + + GF  P       L   
Sbjct: 132 TPGRLLDHFERGKLLL------TGVQIMVVDEADR-----MLDMGFI-PDIERIFSLTP- 178

Query: 517 EWNCLRPTTIVVSATPGSWELEQ---------CQGIIVEQIIRPTGLVDPPVEI------ 561
                   T+  SAT    E+E+          +  +  Q      +    +++      
Sbjct: 179 ----FTRQTLFYSATMAP-EIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKE 233

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           RS   +   +   I    +     ++    K   + + + L +       +H +++  +R
Sbjct: 234 RSFADKRAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQR 293

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           ++ +   R G   +LV  ++   GLDIP    V   D             +  IGR  R 
Sbjct: 294 MKTLDGFRDGSLHLLVASDVAARGLDIPAVSHVFNFDV-----PTHPEDYVHRIGRTGRA 348

Query: 682 VNS-KVILYADTITKSIQLAID 702
               K    A    +    AI+
Sbjct: 349 GRKGKAYTIAVPSDEKHVTAIE 370


>gi|307294408|ref|ZP_07574252.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306880559|gb|EFN11776.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 454

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 73/198 (36%), Gaps = 18/198 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE----QIIRP----TGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      +     +      ++ RP    T +    V++  +R + E +   +
Sbjct: 179 QTLLFSATMPPVIKKLADRFLSNPKSIEVARPATASTNITQRLVKV-DSRKKREALRAML 237

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A+  L  ++    K    DL + L     +   +H ++    RI  +   R G  ++
Sbjct: 238 E--AEDVLSAVIFCNRKTTVRDLNKSLQRHGFKSGEIHGDIDQSARIAELERFRAGSVNI 295

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI     V   DA            +  IGR  R     V     T   
Sbjct: 296 LVASDVAARGLDIKGVSHVFNFDA-----PWHPDDYVHRIGRTGRAGAKGVAYTFVTADD 350

Query: 696 SIQLAIDETTRRREKQLE 713
           +   AID   +  ++Q+E
Sbjct: 351 A--EAIDNIQKLIKQQIE 366


>gi|322495556|emb|CBZ30861.1| putative ATP-dependent RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 926

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 15/187 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQ--------IIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T + SAT     L   +  +  +        +   T  +   +E      +++ +   I
Sbjct: 658 QTFMFSATFPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDNEKMDRLLQII 717

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  + +L+ V TK+MAED+   L+   I    +H + +  +R   + D +     +
Sbjct: 718 YGHEMSDM-VLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPI 776

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP+   V   D  +E            IGR  R  N   I  A     
Sbjct: 777 LVATDVASRGLDIPDVAHVVQFDLPQE-----MDDYTHRIGRTGRAGNKG-IATAFYNRN 830

Query: 696 SIQLAID 702
           + +LA+D
Sbjct: 831 NRRLALD 837


>gi|312868913|ref|ZP_07729097.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
           PB013-T2-3]
 gi|311095562|gb|EFQ53822.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
           PB013-T2-3]
          Length = 498

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 98/263 (37%), Gaps = 19/263 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVE---IRSARTQVEDVYDEIN 576
            T++ SAT    E+++     +       I+   L    V+   +R+   +  D+   + 
Sbjct: 176 QTLLFSAT-MPPEIKRIGEQFMTNPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLI 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                 L  ++   TKR  ++L++ L  R      +H ++    R +I++  + G  D+L
Sbjct: 235 DVQDPDL-TIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDRRTKIMKKFKNGDLDIL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK- 695
           V  ++   GLDI     V   D           S +  IGR  R  +    L   T  + 
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPSDPDSYVHRIGRTGRAGHHGTSLTFVTPNEM 348

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
                I++ TR R   L+           V     + ID ++ +D  +T+   +A +  L
Sbjct: 349 EYLHEIEKLTRVRMLPLKPPSAEEAFKGQVASAFND-IDELIAQD--STDRYKEAAEELL 405

Query: 756 SKKKGKAHLKSLRKQM-HLAADN 777
                   + +L   M   AA  
Sbjct: 406 ESHDATDLVAALLNDMTKEAASE 428


>gi|289663283|ref|ZP_06484864.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 640

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 73/186 (39%), Gaps = 8/186 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     K +  +I+ 
Sbjct: 311 GLDVERVSHVLNYD-----IPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIER 365

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE--DAATTNISIDAQQLSLSKKKGK 761
            TR+  ++++      +N   V   +  + + +     D     +     + ++      
Sbjct: 366 ATRQPIEEMQLPSVDAVNDTRVARFMTRITESLAGGQIDMYRDLLQRYETENNVPAIDIA 425

Query: 762 AHLKSL 767
           A +  L
Sbjct: 426 AAMAKL 431


>gi|259501949|ref|ZP_05744851.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           antri DSM 16041]
 gi|259170126|gb|EEW54621.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           antri DSM 16041]
          Length = 512

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 91/262 (34%), Gaps = 17/262 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVE---IRSARTQVEDVYDEIN 576
            T++ SAT    E+++     +       I+   L    V+   +R+   +  D+   + 
Sbjct: 190 QTLLFSAT-MPPEIKRIGEQFMTDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLI 248

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                 L  ++   TKR  ++L++ L  R      +H ++    R +I++  + G  D+L
Sbjct: 249 DVQDPDL-TIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDRRTKIMKKFKHGDLDIL 307

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK- 695
           V  ++   GLDI     V   D           S +  IGR  R  +    L   T  + 
Sbjct: 308 VATDVAARGLDISGVTHVYNYD-----IPSDPDSYVHRIGRTGRAGHHGTSLTFVTPNEM 362

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
                I++ TR R   L+           V     ++ + I  +       + +    S 
Sbjct: 363 EYLHEIEKLTRVRMLPLKPPSAEEAFKGQVASAFNDIDELIAQDSTDRYKEAAEQLLESH 422

Query: 756 SKKKGKAHLKSLRKQMHLAADN 777
                 A L  L      AA  
Sbjct: 423 DATDLVAAL--LNNMTKEAASE 442


>gi|209878704|ref|XP_002140793.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556399|gb|EEA06444.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 562

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 22/186 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT    E+++    +  +   P  +    ++   A   ++   D ++   ++G 
Sbjct: 327 QTLLWSAT-WPKEVQKLARDLCRE--EPVHINVGSIDTLKASHNIKQYIDVVDEYQKKGR 383

Query: 584 --------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                         ++L+   TK+ A+ LT  L         +H + K  ER  ++ + R
Sbjct: 384 LRMFLNQVMNSPTSKVLIFCETKKGADILTRELRLEGWPALCIHGDKKQEERTWVLNEFR 443

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   +++  ++   GLD+ +   V   D     F       I  IGR  R   S V L 
Sbjct: 444 NGTSPIMIATDVAARGLDVKDITFVVNYD-----FPNQMEDYIHRIGRTGRAGASGVSLS 498

Query: 690 ADTITK 695
             T  K
Sbjct: 499 FFTADK 504


>gi|147899364|ref|NP_001082035.1| RNA helicase II/Gu [Xenopus laevis]
 gi|16975508|gb|AAG22819.2|AF302423_1 RNA helicase II/Gu [Xenopus laevis]
          Length = 759

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 19/178 (10%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIR-----------PTGLVDPPVE-IRSARTQVED 570
           P T++ SAT   W     +  + +Q  +            T +    +E  RS +  V  
Sbjct: 362 PQTLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQKAATTVEHLAIECTRSQKAAV-- 419

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D + + +    + ++   +K  A  L           + +H +++  ER  +++  R 
Sbjct: 420 LGDLVQVYSGSHGKTIIFCDSKLEAHTLATSCGSLKQSAKSLHGDLQQKEREVVLKGFRQ 479

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           G F+VL+  N+   GLDIPE  LV +  A KE       + +   GR  R   + V +
Sbjct: 480 GTFEVLIATNVAARGLDIPEVDLVVLYSAPKE-----ADAYVHRSGRTGRAGRTGVCI 532


>gi|67624257|ref|XP_668411.1| RNA-dependent helicase [Cryptosporidium hominis TU502]
 gi|54659606|gb|EAL38175.1| similar to RNA-dependent helicase p68 (DEAD-box protein p68)
           (DEAD-box protein 5) [Cryptosporidium hominis]
          Length = 406

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +   ++L+   TKR A+ LT+ L         +H + K  ER  ++ + R G   +++ 
Sbjct: 234 VESAPKVLIFCETKRGADILTKELRLDGWPALCIHGDKKQEERTWVLNEFRTGASPIMIA 293

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI +   V   D     F       I  IGR  R   + V L   T  K  +
Sbjct: 294 TDVAARGLDIKDINFVINFD-----FPNQIEDYIHRIGRTGRAGATGVSLSFFTPDKY-R 347

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
           +A D        ++    K  I P+
Sbjct: 348 MASD------LIKVLKEAKQRIPPE 366


>gi|322503130|emb|CBZ38214.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 917

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 15/187 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQ--------IIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T + SAT     L   +  +  +        +   T  +   +E      +++ +   I
Sbjct: 649 QTFMFSATFPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDNEKMDRLLQII 708

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  + +L+ V TK+MAED+   L+   I    +H + +  +R   + D +     +
Sbjct: 709 YGHEMSDM-VLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPI 767

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP+   V   D  +E            IGR  R  N   I  A     
Sbjct: 768 LVATDVASRGLDIPDVAHVVQFDLPQE-----MDDYTHRIGRTGRAGNKG-IATAFYNRN 821

Query: 696 SIQLAID 702
           + +LA+D
Sbjct: 822 NRRLALD 828


>gi|285019480|ref|YP_003377191.1| ATP-dependent RNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283474698|emb|CBA17197.1| probable atp-dependent rna helicase protein [Xanthomonas
           albilineans]
          Length = 456

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 68/222 (30%), Gaps = 24/222 (10%)

Query: 496 TLAEYGF---------RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
            + + GF         +LP       L    +       +         E++      V 
Sbjct: 161 RMLDMGFLPSIKRILTKLPKQNRQTLLFSATFEEGIKQ-LAREFMHNPQEIQATPSNTVA 219

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
             I           +       +       LAA    + L+   TK  A+ LT +L +  
Sbjct: 220 DTITHR--------VHPVDGARKRELLLHLLAADSRKQTLVFARTKHGADKLTTFLDKSG 271

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           I+   +H      +R+  + D +  +  VLV  ++   G+DI +   V   D        
Sbjct: 272 IKAAAIHGNKSQGQRLRALGDFKASRITVLVATDIAARGIDIDQLPQVINYDLPMV---- 327

Query: 667 SKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAIDETTRR 707
                +  IGR  RN    + +         +  AI    +R
Sbjct: 328 -AEDYVHRIGRTGRNGAQGEAVSLVAQDEAKLLRAIARLLKR 368


>gi|261880679|ref|ZP_06007106.1| ATP-dependent RNA helicase DeaD [Prevotella bergensis DSM 17361]
 gi|270332631|gb|EFA43417.1| ATP-dependent RNA helicase DeaD [Prevotella bergensis DSM 17361]
          Length = 560

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 82/198 (41%), Gaps = 15/198 (7%)

Query: 524 TTIVVSAT-PGSWE-----LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
            TI+ SAT P   E     L +    +   + +P   +     +     ++E +   I  
Sbjct: 183 QTIMFSATMPNDIEKMAQNLLKNPAEVKLAVSKPAEKIKQSAYVCYTTQKIE-IIKHIFK 241

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A     R+++   +K+  + + + L +  I    MHS++   +R +I+   + G+ DVLV
Sbjct: 242 AGDLK-RVIIFSGSKQKVKQINQALAQLKINSGEMHSDLDQSQRDDIMYKFKSGQIDVLV 300

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             +++  G+DI +  +V   D  ++         +  IGR AR     V +         
Sbjct: 301 ATDIVARGIDIDDIAMVINYDVPRD-----SEDYVHRIGRTARADRDGVAITLVNEDD-- 353

Query: 698 QLAIDETTRRREKQLEHN 715
             A  +  +  +K++E N
Sbjct: 354 MFAFHKIEQFLDKEIEKN 371


>gi|254821954|ref|ZP_05226955.1| RhlE [Mycobacterium intracellulare ATCC 13950]
          Length = 452

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 7/134 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   I  A  +G   ++   TKR A+ + + L ER   V  +H ++  + R + ++  R
Sbjct: 251 ELVSRILQAEGRG-ATMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQVAREKALKAFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G  DVLV  ++   G+DI +   V             + + +  IGR  R   + V + 
Sbjct: 310 TGDIDVLVATDVAARGIDIDDVTHVINY-----QIPEDEQAYVHRIGRTGRAGKTGVAVT 364

Query: 689 YADTITKSIQLAID 702
             D    +    ID
Sbjct: 365 LVDWDELTRWALID 378


>gi|164659842|ref|XP_001731045.1| hypothetical protein MGL_2044 [Malassezia globosa CBS 7966]
 gi|159104943|gb|EDP43831.1| hypothetical protein MGL_2044 [Malassezia globosa CBS 7966]
          Length = 606

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 15/183 (8%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL-------VDPPVEIRSARTQVE 569
            +   +  T++ SAT     L+     + + +I   G        V   VE  S  +++ 
Sbjct: 352 SFFTRQRQTLLFSATMPKKILDFAAQSLFDPVIVNVGRAGAASLDVVQEVEYVSQESKMT 411

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + + +   A    R+++    K   +D+ E+L  + +    +H      ER   I   +
Sbjct: 412 QLLEALQKTAP---RVIVFSDNKNEVDDIHEFLLRKGVEAVAIHGSKTQDEREYAIESFK 468

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GK DV+V   +  +GLD      V      K+         +  IGR  R+  + V   
Sbjct: 469 SGKKDVMVASGIASKGLDFSNIQHVINYTMPKD-----IEDYVHQIGRTGRSGKTGVATT 523

Query: 690 ADT 692
              
Sbjct: 524 FVN 526


>gi|328870357|gb|EGG18732.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 734

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           IL+ V +K  A +L + L   NI V  +HS+    +R  I++  R GK  VL+   L+  
Sbjct: 491 ILIFVQSKERATELFQELIFDNINVDVIHSDRTQQQRDTIVQRFRSGKIWVLICTELMAR 550

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSIQLAIDE 703
           G+D      V   D     F  +  S +  IGR  R     K I         +  +I  
Sbjct: 551 GMDFKGVNYVINFD-----FPNTIASYVHRIGRTGRAGRQGKAITLYTKDDFPMIPSISN 605

Query: 704 TTR 706
             R
Sbjct: 606 VIR 608


>gi|320590186|gb|EFX02629.1| dead deah box DNA helicase [Grosmannia clavigera kw1407]
          Length = 674

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 6/125 (4%)

Query: 574 EINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            +  AA  G R  L+  +      DLT       +  + +  E   L R   +   R G 
Sbjct: 275 WLAKAAAAGRRSTLVFCVDLSHVADLTTAFCRHGVDAQAVTGETDRLTRSRRLEAFRRGD 334

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VL+   +  EG DIP    V +    +     S+  L+Q IGR  R  + K   +   
Sbjct: 335 FPVLLNCGVFTEGTDIPGVDCVVLARPTR-----SRNLLVQMIGRGMRLHDRKTNCHVID 389

Query: 693 ITKSI 697
           +  ++
Sbjct: 390 MVATL 394


>gi|300933595|ref|ZP_07148851.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
          Length = 779

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++ V TK   E+L E L  R      ++ ++   +R   +  L+ G+ D+LV  ++ 
Sbjct: 351 EAMIMFVRTKNETEELAERLRARGFNAAAINGDIAQAQRERTVDQLKDGRLDILVATDVA 410

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           S +  IGR  R   S   IL+     + +  AI
Sbjct: 411 ARGLDVDRITHVFNYD-----IPHDTESYVHRIGRTGRAGRSGRAILFVTPRERRLLKAI 465

Query: 702 DETTR 706
           +  T+
Sbjct: 466 ERATK 470


>gi|56784388|dbj|BAD82427.1| putative DEAD box RNA helicase [Oryza sativa Japonica Group]
 gi|56785381|dbj|BAD82339.1| putative DEAD box RNA helicase [Oryza sativa Japonica Group]
 gi|222619731|gb|EEE55863.1| hypothetical protein OsJ_04500 [Oryza sativa Japonica Group]
          Length = 571

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 67/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSAT-PGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E           + II    ++    +   +E+ S   +   +   +
Sbjct: 336 QTLYWSATWPREVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKYPRLSKLL 395

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +     G RIL+   TK+  + +T  L         +H +    ER  ++ + + GK  +
Sbjct: 396 SDLMD-GSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPI 454

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  +    I  IGR  R   S       T++ 
Sbjct: 455 MAATDVAARGLDVKDIKCVINFD-----FPTTLEDYIHRIGRTGRAGASGTAFTFFTLSN 509

Query: 696 S 696
           +
Sbjct: 510 A 510


>gi|91794665|ref|YP_564316.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91716667|gb|ABE56593.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 611

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 7/131 (5%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +    +++ V T+    +L E L  R      +H ++    R   +  L+ GK D+L+ 
Sbjct: 242 VENTEGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLD+   G V   D           + +  IGR  R   +   IL+  +    +
Sbjct: 302 TDVAARGLDVERIGHVVNYD-----IPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRM 356

Query: 698 QLAIDE-TTRR 707
              I+  T  R
Sbjct: 357 LRTIERATNSR 367


>gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
           stomatis DSM 17678]
          Length = 538

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 105/273 (38%), Gaps = 43/273 (15%)

Query: 524 TTIVVSAT--PGSWELEQC------QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T + SAT      EL +          +V + +  + +    +E R +  ++E +   +
Sbjct: 180 QTALFSATMPKAILELTKKYQKDPVHIKVVRKTLTVSNIKQYYIETRKS-NKLEVLTRLL 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++   +    ++   TK+ A++L   L  R      +H ++K ++R  ++   R G  D+
Sbjct: 239 DVYNPK--LTVVFTNTKKGADELVSSLQARGYGADSLHGDLKQVQRDIVMDKFRAGTIDI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+DI +   V   +       +     +  IGR  R      I ++    +
Sbjct: 297 LVATDVAARGIDIDDVECVINYE-----LPQDDEYYVHRIGRTGRAGREG-IAFSFAFGR 350

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINP-------------QSVKEKIME---------VI 733
            ++  + +  R  + ++    KH+I               Q VKE + E         + 
Sbjct: 351 EMRK-LKDIERYTKSKI---VKHDIPSVNDVEEKKVSQFFQGVKETLEEGNIAKHVQWIE 406

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKS 766
           D    ED +  +I     + S+  ++ +  ++ 
Sbjct: 407 DFCNEEDYSMIDICAAILKNSMGDEEMQEIVEE 439


>gi|296084100|emb|CBI24488.3| unnamed protein product [Vitis vinifera]
          Length = 547

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 81/217 (37%), Gaps = 29/217 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE----IR--------SARTQVEDV 571
            T++ SAT   W  E     +   +     + +  ++    +R        SAR+QV   
Sbjct: 159 QTLLFSATLPGWVKEISSRFLKPTLKTADLVGNEKMKASTNVRHIVLPCSSSARSQV--- 215

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             ++      G R ++   TK  A +L   L       R +H +++  +R   +   R G
Sbjct: 216 IPDVIRCYSSGGRTIIFTETKDSASELAGLLP----GARALHGDIQQSQREVTLSGFRSG 271

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           KF  LV  N+   GLDI +  L+   +  ++       + I   GR  R  NS V +   
Sbjct: 272 KFMTLVATNVAARGLDINDVQLIIQCEPPRDV-----EAYIHRSGRTGRAGNSGVAVMLF 326

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
              +S    I+     RE  ++        P  + + 
Sbjct: 327 DPRRSNISKIE-----RESGVKFEHVSAPQPADIAKS 358


>gi|254570837|ref|XP_002492528.1| Putative protein of unknown function [Pichia pastoris GS115]
 gi|238032326|emb|CAY70349.1| Putative protein of unknown function [Pichia pastoris GS115]
 gi|328353460|emb|CCA39858.1| hypothetical protein PP7435_Chr3-0907 [Pichia pastoris CBS 7435]
          Length = 682

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 75/398 (18%), Positives = 140/398 (35%), Gaps = 42/398 (10%)

Query: 400 KEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPP 459
           ++EL  +     K            +I  D+  L  T         +   T        P
Sbjct: 119 RKELADQAARTIKRFFP------HMKIEIDMAGLRPTHDDDVDVVVASVPTLARNNSKNP 172

Query: 460 TLFEYIPEDS-LLFVDESHVTIP-------QISGMYRGDFHRKATLAEYGFRLPSCMDNR 511
            LF+Y P +   + +DE H  I        Q       D      +  +   L    D +
Sbjct: 173 RLFDYDPNEFKAIIIDECHHAISDSYIKILQYFNALSKDSSDGIIVVGFSATL-KRHDAQ 231

Query: 512 PLRFEEWNCLRPTTIVVSATPGSW----ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           PL  + +N +     ++S     +     + + +G      ++     D  ++   +   
Sbjct: 232 PLD-KVFNTIAYEKDLISMVKEGYLSELSITKVEGAFSLDDVKLDKTGDYQLQSLESSVN 290

Query: 568 VEDVYDEINLAAQQGLRIL------LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
              V + +     +  ++L         + K+  +DL E      I+  ++      LER
Sbjct: 291 TAAVAELVLKTYLERKKVLGLKSSLFFCVNKQHVQDLCELFCANGIKAGFVSGNTPLLER 350

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            +II++   GK +VL+  N+  EG DIP    + +L   K     S+  L Q IGR  R 
Sbjct: 351 EQIIKNFIDGKLNVLMNCNVFTEGTDIPNIDSIFLLRPTK-----SRPLLSQMIGRGLRL 405

Query: 682 VNSKVILYADTITKSIQLAID-------ETTRRREKQLEHNKK--HNINPQSVKEKIMEV 732
            + K   Y      +    I+        T R+    L+ +++  H    +   + + EV
Sbjct: 406 HSGKTKCYVTDFVGTTHSGINVDATLEGITKRQMNSLLQFDQEMVHG--NRDYSKMLEEV 463

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQ 770
            D +           I++   +LSK+  ++    L KQ
Sbjct: 464 PDYLRYTSFNDITSYINSIPKNLSKENQRSIEYKLYKQ 501



 Score = 42.4 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 157 IAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ------RPAIVMAPNKILAAQLY 210
           I  ++K I   E    +   TG GKT   + ++  +       +  +++   K LA Q  
Sbjct: 68  IESIMKVIRGGETRLAVSLATGGGKTVIFSNLLNEIPSNKYNGQKTLILVHRKELADQAA 127

Query: 211 SEFKNFFPHNAVE 223
              K FFPH  +E
Sbjct: 128 RTIKRFFPHMKIE 140


>gi|149195831|ref|ZP_01872888.1| Transcription-repair coupling factor, MFD (superfamily II helicase
           ) [Lentisphaera araneosa HTCC2155]
 gi|149141293|gb|EDM29689.1| Transcription-repair coupling factor, MFD (superfamily II helicase
           ) [Lentisphaera araneosa HTCC2155]
          Length = 1062

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 63/166 (37%), Gaps = 8/166 (4%)

Query: 223 EYFVSYYDYYQPEAYVPRTDTYIEKE---SSINEQIDRMRHSATRSLLERN---DCIVVS 276
           E   + +  YQ  + +P  D  +  E     +   ID  R      LL+       ++ S
Sbjct: 55  ESCFNEFKKYQSASLLPNVDLLLYPEFNSDQVEYDIDLERSRTLNQLLQNRGEPQVLICS 114

Query: 277 SVSCIYGIGSVESYSQMIVQLKIGDS-VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDS 335
             S +  +      +   + LK+ D     ++L     +  +  +    + G F + G  
Sbjct: 115 VASLLCAVTPPGLLNSQSLILKLADEQYAPEKLCEIFTEMGFDNEAQVSLPGEFSLRGGI 174

Query: 336 IEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYA 381
           +++F    +    R+  F ++I+ +  F   + + I + ++ ++  
Sbjct: 175 LDVFSPD-QKFPVRIDFFDDEIDSLRLFDVDSQKSIADAKSYQVSP 219



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 20/186 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRP--TGLVDPPVEIRSARTQVEDVYDEINLAA 579
            P T+ +S T               + +R   T   D  +E+             I    
Sbjct: 685 IPRTLYLSMTGLRDFSTILTAPHNRKPVRTIVTKENDEIIEV------------AIRREL 732

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLV 637
           ++G ++       +  E++   L  +      +  H ++   E   ++ +   G   +LV
Sbjct: 733 ERGGQVYYLHNRVKTIENVALKLKRQFPEANILIGHGQMDEEELEMVMNEFTDGDGQILV 792

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              ++  G+DI     + I  AD+ G     +SL Q  GR  R+             ++I
Sbjct: 793 CTTIIESGMDIRNANTMVIDRADRFGL----SSLYQLRGRVGRDHRQAYCYLLMPRDEAI 848

Query: 698 QLAIDE 703
                E
Sbjct: 849 MDNAKE 854


>gi|16800283|ref|NP_470551.1| hypothetical protein lin1214 [Listeria innocua Clip11262]
 gi|16413688|emb|CAC96445.1| lin1214 [Listeria innocua Clip11262]
          Length = 470

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 87/252 (34%), Gaps = 31/252 (12%)

Query: 521 LRPTTIVVSATPGSWELEQ--CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
            +   +  SAT    E++    +      +I        P+       Q ++    +   
Sbjct: 171 KQRQNLFFSAT-LPEEMQDLIKRYQDNPMVIEMASEKTNPI--FHVEMQTDNKEKTLKDV 227

Query: 579 --AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +     ++   TK   ++LT+ L   +++   +H  ++  +R   + D + GK   L
Sbjct: 228 LITENPDSAIIFCNTKNQVDELTDLL---DVKASKIHGGLRQEDRFRAMDDFKSGKSRFL 284

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITK 695
           +  ++   G+D+    LV   D   E     K + +  IGR  R   S K I +  T   
Sbjct: 285 IATDVAGRGIDVDNVSLVINYDLPIE-----KENYVHRIGRTGRAGKSGKAISFVKTNEN 339

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
            +   I+E               NI  +  K++   +I+    E+A              
Sbjct: 340 PLLRDIEEML-------------NITIE--KKRKPTIIEVKANEEAFRKKQQKRPTIKKA 384

Query: 756 SKKKGKAHLKSL 767
             +K   ++  L
Sbjct: 385 RGEKLNKNIMKL 396


>gi|223590193|sp|A5DLE0|DBP8_PICGU RecName: Full=ATP-dependent RNA helicase DBP8
 gi|190347673|gb|EDK39993.2| hypothetical protein PGUG_04091 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 433

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 106/307 (34%), Gaps = 30/307 (9%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF-----EEWNCLRPT 524
            L +DE+      +S  +  D  R          LP     + L F     +    L+  
Sbjct: 150 FLVLDEADRL---LSNSFGSDLERCFK------ILPDASKRQTLLFTATVTDAVRALKDK 200

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            +     P        + +  +Q+  P  L    V +  +  +   +++ +     +   
Sbjct: 201 PVPEGKKPVFI----HEIVSKDQVAIPATLTISYVFV-PSYVKEAYLHNILVSPKYEKAS 255

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V     AE L   L + +IRV  +HSE+   ER   +   R G   VL+  ++   
Sbjct: 256 AIVFVNRTYTAEILRRTLRKLDIRVASLHSEMPQSERTNSLHRFRAGAARVLIATDVASR 315

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE 703
           GLDIP   LV   D             I  +GR AR       +           LAI+ 
Sbjct: 316 GLDIPNVELVVNQD-----IPADPDDYIHRVGRTARAGKKGGSVSIVSEKDVERILAIEN 370

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
                    + +    +N   + ++ + ++     E  A        ++  ++K+K +  
Sbjct: 371 -----HINKKMDLLEEVNDDKIIKESLSIVTAAKRESVADMEKEGFGEKRKINKRKREER 425

Query: 764 LKSLRKQ 770
            +  +K+
Sbjct: 426 TRDSKKR 432


>gi|126734915|ref|ZP_01750661.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           CCS2]
 gi|126715470|gb|EBA12335.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           CCS2]
          Length = 435

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 70/194 (36%), Gaps = 21/194 (10%)

Query: 524 TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT         G++ L     + V    +    ++  V   +   + + + + +
Sbjct: 181 QTMMFSATMPKLMGELAGTY-LTDAVRVQVNPPGQAVKKINQSVHFVAQAAKTDLLIELL 239

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +    +    ++   TK   E L + L ++      +H      +R   +   + GK  V
Sbjct: 240 D--KHRDELAIVFGRTKHGCEKLYKVLEKKGFAAASIHGNKSQGQRQRALEAFKSGKTRV 297

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT- 694
           LV  ++   GLDIP+   V   D           + +  IGR AR       +       
Sbjct: 298 LVATDVAARGLDIPDVRFVYNYD-----LPNVAENYVHRIGRTARAGADGSAVALVAPDE 352

Query: 695 ----KSIQLAIDET 704
               K I+ A+ ET
Sbjct: 353 MIELKDIEKAMKET 366


>gi|320583326|gb|EFW97541.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pichia angusta
           DL-1]
          Length = 533

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 76/235 (32%), Gaps = 22/235 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFR---------LPSCMDNRPLRFEEWNCLR 522
            VD     +  +   +         + + GF          LP   +N P         R
Sbjct: 261 LVDCLEQQLVSLDRCFFLVMDEADRMIDMGFENDLNKILESLPDGSEN-PHYLGSGEPKR 319

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-------VYDEI 575
            T +  +  P   E    + +     +    +      +R    QV+D       +  ++
Sbjct: 320 TTMMFTATMPPQIEKISAKYLKNPGTVMVGEVGGAVDSVRQEAIQVDDSDEKRLQMLQKV 379

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                    I++ V  ++  E + E+L +       MH      +R   I+ ++ G+ D+
Sbjct: 380 LTRGIYSPPIIIFVNFRKTCEMVAEFLEQLGFNAVTMHGSKTQEQREYAIQQIKEGRSDI 439

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           LV  ++   G+DIP+  LV      K     +       IGR  R       +  
Sbjct: 440 LVATDVAGRGIDIPDVSLVVNFQMAK-----NIEDYTHRIGRTGRAGKEGTAITF 489


>gi|164658139|ref|XP_001730195.1| hypothetical protein MGL_2577 [Malassezia globosa CBS 7966]
 gi|159104090|gb|EDP42981.1| hypothetical protein MGL_2577 [Malassezia globosa CBS 7966]
          Length = 480

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 87/216 (40%), Gaps = 19/216 (8%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
           T  V   P + E+   Q  +  + IR    +D   E       VE +Y+ + +      +
Sbjct: 275 TFAVKFAPNANEIRLKQEELSVESIR-QFYMDCKTEEHKYEVLVE-LYNLLTIG-----Q 327

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++    +  A+ + + +     RV  +H ++ T  R   I + R GK  VL+  N++  
Sbjct: 328 SIIFCAKRDTADKIAQRMTAEGHRVDSLHGKLDTAARDRTIDEFRSGKCKVLIATNVIAR 387

Query: 645 GLDIPECGLVAILDADKEGFL-RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
           G+DI +  LV   D            + +  IGR  R     V         SI    D+
Sbjct: 388 GIDIQQVTLVINYDMPLTQQGDPDAETYLHRIGRTGRFGRKGV---------SINFVHDD 438

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
           T+RR+ + +E     +I P  V+   +E ++  + E
Sbjct: 439 TSRRQMESIERALHCHIVP--VQTDDLEAMESTIKE 472


>gi|84498694|ref|ZP_00997447.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
 gi|84381031|gb|EAP96918.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
          Length = 601

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 6/123 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E L E L  R      ++ ++   +R   +  L+ GK D+LV  ++   
Sbjct: 263 MIVFVRTKNETEMLAEKLRARGFSATAINGDIAQNQRERTVAQLKSGKLDILVATDVAAR 322

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   I +     K +  AI++
Sbjct: 323 GLDVERISHVVNYD-----IPTDTESYVHRIGRTGRAGRSGDAISFVTPREKYLLKAIEK 377

Query: 704 TTR 706
            T+
Sbjct: 378 ATK 380


>gi|283786193|ref|YP_003366058.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
 gi|282949647|emb|CBG89266.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
          Length = 444

 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 88/260 (33%), Gaps = 31/260 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           R  T++ SAT    E E  +            L++ PVE+ ++ +  E            
Sbjct: 181 RKQTMLFSAT---LEGEAIKDFAER-------LLEDPVEVSASPSTRERKKIHQWYYRAD 230

Query: 582 GL-----------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
                              R ++ V  +    +L E L    I   Y+  E+  ++R E 
Sbjct: 231 NYEHKFELLKHLLKQDDATRTIVFVRKRERVHELAEQLRLAGISNCYLEGEMAQIKRNEG 290

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I+ L  G+ +VLV  ++   G+DIP+   V   D  + G   +    I   GRA R   +
Sbjct: 291 IKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSG--DTYLHRIGRTGRAGRKGTA 348

Query: 685 KVILYADTITKSIQ--LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
             ++ A      ++    I+E  + R            + +   +   +V+     +   
Sbjct: 349 ISLVEAHDHLLMLKIGRYIEEPLKARVIDELRPTTRAPSEKMTGKPSKKVLAKRAEKKKE 408

Query: 743 TTNISIDAQQLSLSKKKGKA 762
               +   ++     K    
Sbjct: 409 KQKDAPRVKKRHRDTKNIGK 428


>gi|195169451|ref|XP_002025535.1| GL15249 [Drosophila persimilis]
 gi|194109014|gb|EDW31057.1| GL15249 [Drosophila persimilis]
          Length = 688

 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 23/169 (13%)

Query: 537 LEQCQGIIVEQII-------RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
           +       + QI+       +P  +V    EI                +A  G +I++ V
Sbjct: 199 MNLSANHNIRQIVEICTEMEKPQRMVRLLKEIAPTNN-----------SANNGSKIIIFV 247

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            TK   ED+ + +         +H +    ER  +++D R GK ++L+  ++   GLD+ 
Sbjct: 248 ETKIKVEDILQIIRTEGYIATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVE 307

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           +   V   D     +  S  + +  IGR  R           T   + Q
Sbjct: 308 DLQYVINYD-----YPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQ 351


>gi|315040958|ref|XP_003169856.1| ATP-dependent RNA helicase DBP2 [Arthroderma gypseum CBS 118893]
 gi|311345818|gb|EFR05021.1| ATP-dependent RNA helicase DBP2 [Arthroderma gypseum CBS 118893]
          Length = 558

 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 82/209 (39%), Gaps = 21/209 (10%)

Query: 524 TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T + SAT           +  +  Q  I  Q +     +   VE+ S   + + +   +
Sbjct: 321 QTCMWSATWPKDVRQLANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIKHL 380

Query: 576 NLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               + +  ++L+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  
Sbjct: 381 ERIMEDKKSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSP 440

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           ++V  ++   G+D+ +   V   D     +  +    +  IGR  R   +   +   T  
Sbjct: 441 IMVATDVASRGIDVRDITHVLNHD-----YPNNSEDYVHRIGRTGRAGANGTAITLFTTE 495

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            + Q        R   ++    K  I+P+
Sbjct: 496 NAKQA-------RDLVKILTESKQQIDPR 517


>gi|312882439|ref|ZP_07742180.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369839|gb|EFP97350.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 452

 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 81/236 (34%), Gaps = 25/236 (10%)

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           Q+  +   +  R     + GF      D R  +       +   ++ SAT  +   +  +
Sbjct: 147 QLEVLVLDEADRM---LDMGFI----HDIR--KILNLLPKKRQNLLFSATFSAEIRQLAK 197

Query: 542 GII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           G++   VE  + P       VE  +  A  + +       +   +  ++L+   TK  A 
Sbjct: 198 GLVNDPVEISVTPQNSTAVTVEQSVYPADKRQKAPMLVELITQGKWQQVLVFCRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            L ++L +  I    +H       R   + + + G+  VLV  ++   G+DIP+   V  
Sbjct: 258 RLAQFLNKAEITAAAIHGNKSQGARTRALSEFKTGEIRVLVATDIAARGIDIPQLPQVVN 317

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSIQLAIDETTRRREKQ 711
            D             +  IGR  R     K     +    S    I+     R  Q
Sbjct: 318 FD-----LPNVAEDYVHRIGRTGRAGEAGKAFSLVEADEASDLFGIE-----RLIQ 363


>gi|242086224|ref|XP_002443537.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
 gi|241944230|gb|EES17375.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
          Length = 618

 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 71/191 (37%), Gaps = 16/191 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T++ SAT  +W  +  Q  +   +       D          + + S   Q   V  E+
Sbjct: 276 QTLMFSATMPTWIRKLTQKYLNSPVTVDLVGEDDQKLAEGISLLSVSSENRQKPAVLGEL 335

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                +G + ++   TKR A+ L+  +  R+ +   +H ++   +R   +   R G+F++
Sbjct: 336 IKEHAKGGKCIVFTQTKRDADRLSHSMS-RSFQCEALHGDISQSQRERTLGGFRDGRFNI 394

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   GLDIP   LV            S    +   GR  R       +      +
Sbjct: 395 LIATDVAARGLDIPNVDLVI-----HYELPNSSEIFVHRSGRTGRAGKKGTAIVMYNYEQ 449

Query: 696 SIQLAIDETTR 706
           S   A+    R
Sbjct: 450 S--RAVRVIER 458


>gi|219684175|ref|ZP_03539119.1| transcription-repair coupling factor [Borrelia garinii PBr]
 gi|219672164|gb|EED29217.1| transcription-repair coupling factor [Borrelia garinii PBr]
          Length = 1124

 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 93/253 (36%), Gaps = 22/253 (8%)

Query: 173 LLGVTGSGKTFTMAKV--IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L G  G  K F + K+       +  +++     L        KN       + F   Y 
Sbjct: 32  LTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTL-----DNIKNDLKVITSQIFELNY- 85

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
            + P  Y         K +  NE+I  +         +     +    S +  I    + 
Sbjct: 86  -FSPLVYKG----IGSKSTIFNERIKFL----INFYKKNPGIYITVLKSLLSKIPDKNTL 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
              I +++   ++ + ++  +LV   Y++     I G F + G+ I+++P   E+   ++
Sbjct: 137 LNNICKIEKNTNINRTDIEKTLVTLGYEKTLRVTIPGEFAIKGEIIDLYP-FGEESPIKI 195

Query: 351 SMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKE-ELKMRLI 408
            +  + IEEI +F PLT  K    +   +I      +     +N+    IK  E    L 
Sbjct: 196 VLNFDKIEEIRKFNPLTQLKQDNEILEFQILPKKEIIWKNEIINSLKTKIKSVEYNKILE 255

Query: 409 E--LEKEGRLLEA 419
           E   +KE +  E 
Sbjct: 256 ELNFKKEAKTEEM 268



 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 63/187 (33%), Gaps = 11/187 (5%)

Query: 525 TIVVSATPGSWELEQCQ---GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L         I    I P   V     + S    +  +   I     +
Sbjct: 733 CLSLSATPIPRSLHMSLIKLRDISVLKIPPKNRVKIEAYLESFSELL--IKHAIESELSR 790

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++ L          L   + +     R   +H ++   E   I+ +     + +L+  
Sbjct: 791 DGQVFLVNHNIEELHYLKTLIEKLTPYARIAIIHGKLTGDEIENIMHNFIKKAYQILLAT 850

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DIP    + I +A+K G  +    L Q  GR  R        +    ++ +  
Sbjct: 851 TIIENGIDIPNANTIIINNANKFGLAQ----LYQLKGRVGRGSKKAYAYFLYQDSEKLNE 906

Query: 700 AIDETTR 706
           +  E  R
Sbjct: 907 SSIERLR 913


>gi|190892959|ref|YP_001979501.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
 gi|190698238|gb|ACE92323.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
          Length = 565

 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 74/215 (34%), Gaps = 18/215 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPT 552
            + + GF      D R  +  +    +  T++ SAT      +     +V+ +   + P 
Sbjct: 181 QMLDLGFV----HDLR--KIAKLVPKKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPP 234

Query: 553 GLVDPPVE--IRSARTQVEDVYDEINLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRV 609
           G     VE  +     + +          +    R ++ + TK  AE L ++L      V
Sbjct: 235 GKAADKVEQYVHFVAGKNDKTELLRKSLTENPDGRAIVFLRTKHGAEKLMKHLDNIGYSV 294

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H      +R   ++  R G    L+  ++   G+DIP    V   D           
Sbjct: 295 ASIHGNKSQGQRERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYD-----LPEVPD 349

Query: 670 SLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           + +  IGR AR     + I +       +   I+ 
Sbjct: 350 AYVHRIGRTARAGRDGIAIAFCAPDEAKLLRDIER 384


>gi|115373138|ref|ZP_01460440.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
 gi|115369894|gb|EAU68827.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
          Length = 606

 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 74/188 (39%), Gaps = 10/188 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT G       Q ++ + +   + P+G        R    +  + Y  +     
Sbjct: 204 QTLLFSATLGHNVTRFAQEVLRKPVRVEVTPSGTPAARAVQRLYEVEASEKYPLLLSLLA 263

Query: 581 QG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +  L +L+   T+  AE + E L     +   +H++    +R + +   R G++  LV  
Sbjct: 264 KDQLSVLVFTRTRERAEKVQEVLKRAGHKTAAIHADRTQGQRRQALEGFRRGQYRCLVAT 323

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQ 698
           ++   GLD+ + G V   D        +    +  IGR AR   + +   +  +  +   
Sbjct: 324 DIASRGLDVEDIGHVINFD-----LPHAPEDYVHRIGRTARAGASGRASTFVTSRDEETV 378

Query: 699 LAIDETTR 706
            AI+   R
Sbjct: 379 RAIERIVR 386


>gi|62896755|dbj|BAD96318.1| DEAD-box protein abstrakt variant [Homo sapiens]
          Length = 622

 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 348 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 401

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 402 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 460

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 461 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 515

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+            I  A DE+
Sbjct: 516 YVHRIGRTGRSGNTGNATTF------INKACDES 543


>gi|1170506|sp|P41379|IF4A2_NICPL RecName: Full=Eukaryotic initiation factor 4A-2; Short=eIF-4A-2;
           AltName: Full=ATP-dependent RNA helicase eIF4A-2
 gi|19697|emb|CAA43513.1| nicotiana eukaryotic translation initiation factor 4A [Nicotiana
           plumbaginifolia]
          Length = 413

 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 17/192 (8%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KVILYADTITKS 696
            V + + T    
Sbjct: 377 GVAINSVTKDDE 388


>gi|310814605|ref|YP_003962569.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare
           Y25]
 gi|308753340|gb|ADO41269.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare
           Y25]
          Length = 426

 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 69/190 (36%), Gaps = 13/190 (6%)

Query: 524 TTIVVSAT-PGS-WELEQC--QGIIVEQIIRPTGLVDPP---VEIRSARTQVEDVYDEIN 576
            T++ SAT P    EL        I  Q+  P          V   ++R + + + + ++
Sbjct: 181 QTMLFSATMPKQMEELAASFLSNPIRVQVNPPGQAATKITQSVHFVASRAKTDLLIELLD 240

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             A +    L+   TK   E L + L      V  +H      +R   +RD R G   VL
Sbjct: 241 --AHRDELALVFGRTKHGMEKLAKQLENAGYAVAAIHGNKSQGQRDRALRDFRAGTLRVL 298

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK- 695
           V  ++   GLDIP+   V   +        +    I    RA ++  +      D +   
Sbjct: 299 VATDVAARGLDIPDVRYVYNYELP--NVPDNYVHRIGRTARAGKDGQAVAFCAPDEMGDL 356

Query: 696 -SIQLAIDET 704
             IQ  +  T
Sbjct: 357 RDIQKVMKTT 366


>gi|330831232|ref|YP_004394184.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
 gi|328806368|gb|AEB51567.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
           B565]
          Length = 406

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 84/221 (38%), Gaps = 20/221 (9%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----P 551
            L E GF      D + L    +      T++ SAT    ELE     ++ +  R    P
Sbjct: 153 RLLEMGF----APDIKALL--GFIPADRQTLLFSAT-LPAELETLANGLLREPTRIEANP 205

Query: 552 TGLVDPPVEIRSAR-TQVEDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRV 609
              V   +E R     +   V   I+L  +Q   ++L+ +  +  A+ +   L +  I V
Sbjct: 206 LNSVVNEIEERLYLVNKSSKVPALISLLKEQAWPQVLVFISARDDADGVARKLAKAGIAV 265

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H E +   R + + D + GK  VLV  +L+  G+ +    +V  LD        S  
Sbjct: 266 AALHGEKEQAVREQALGDFKEGKIRVLVATDLMARGIHVEALPVVINLD-----LPASAP 320

Query: 670 SLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRRE 709
             +  IGR AR       I         +  AI  T   RE
Sbjct: 321 VYVHRIGRTARAGREGLAISLVCHGESDMLQAI-RTLTGRE 360


>gi|145491907|ref|XP_001431952.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399059|emb|CAK64554.1| unnamed protein product [Paramecium tetraurelia]
          Length = 408

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 81/221 (36%), Gaps = 39/221 (17%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT             P   E+   + + ++ + +    +D   ++        +
Sbjct: 211 QIMMFSATFPVDVKGFINEHVPQIQEINLMEELTLKGVTQYYLFIDEKQKV--------N 262

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + I    +     ++   + R  E LT+ + E      Y+H+++   +R ++    R 
Sbjct: 263 CLNFIFSKLEINQ-AIIFCNSARRVELLTQKITEFGYSCFYIHAKMNQKDRNKVFHSFRK 321

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
                LV  +L   G+DI    +V   D     F R+  + +  IGR+ R  +  + +  
Sbjct: 322 AVGRCLVSTDLFTRGIDIQSVNVVINFD-----FPRTAETYLHRIGRSGRFGHLGLAVNF 376

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNIN--PQSVKEKI 729
                     I ET +    Q+E     +I   P+ V + +
Sbjct: 377 ----------ITETDKDTLVQIEQELDTDIKPFPKEVDKSL 407


>gi|170724880|ref|YP_001758906.1| ATP-dependent RNA helicase RhlB [Shewanella woodyi ATCC 51908]
 gi|226739552|sp|B1KQF6|RHLB_SHEWM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|169810227|gb|ACA84811.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 441

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 80/238 (33%), Gaps = 15/238 (6%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D     I  +S +          + + GF      D R L     +      ++ SAT
Sbjct: 145 IIDYVRQGIINLSAIQAVVLDEADRMFDLGFI----KDIRFLFRRMPDAKSRLNMLFSAT 200

Query: 532 PGSWELEQCQGIIVE---QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG--LRIL 586
                 E     + E    +I P       ++       +++    +    ++    + +
Sbjct: 201 LSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPSMDEKMRLLLSLIEEDWPEKAI 260

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +   TK   E++  +L     RV  +  +V   +RI I+     GK D+LV  ++   GL
Sbjct: 261 VFSNTKHSCENVWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTEGKLDILVATDVAARGL 320

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
            I +   V   D             +  IGR  R     V + +A         AI+E
Sbjct: 321 HISDVSHVYNYD-----LPDDCEDYVHRIGRTGRAGKKGVSVSFACEEYALNLPAIEE 373


>gi|122227760|sp|Q0ILZ4|RH9_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 9
          Length = 628

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           V  E+     +G + ++   TKR A+ L+ Y   R+ + + +H ++   +R   ++  R 
Sbjct: 331 VLGELIKEHAKGGKCIVFTQTKRDADRLS-YTMGRSFQCQALHGDITQAQRERTLKGFRE 389

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G F++L+  ++   GLDIP   LV            S    +   GR  R       +  
Sbjct: 390 GHFNILIATDVAARGLDIPNVDLVI-----HFELPNSSELFVHRSGRTGRAGKKGKAIVM 444

Query: 691 DTITKSIQLAIDETT 705
            +  +S  + + E  
Sbjct: 445 HSYQQSRAIRMVEND 459


>gi|319404441|emb|CBI78044.1| ATP-dependent RNA helicase [Bartonella rochalimae ATCC BAA-1498]
          Length = 415

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 86/235 (36%), Gaps = 40/235 (17%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            + + GF      D R  +   +   +  T + SAT     + +   ++ + ++R     
Sbjct: 165 RMLDMGFI----SDVR--QIANFLHEKCQTALFSAT-----MSKEVNVLADNLLRKPV-- 211

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEY 601
              +E+ S  T   ++   +   +    +              +++ + TK  A+ +   
Sbjct: 212 --KIEVVSQGTTAAEITQVLYCVSTSEKKSILSKLLTNPALTSVIVFIRTKHGADSVARS 269

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L +    V  +H       R   +++ R G   VLV  ++   G+DIP    V   D   
Sbjct: 270 LAKTGYSVATIHGNKSQNARQCALKNFREGLVRVLVATDIAARGIDIPGISHVINYD--- 326

Query: 662 EGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR----RREK 710
                +  S +  IGR  RN  S   + L+ + I +    AI+   R    R+E 
Sbjct: 327 --LPDNAESYVHRIGRTGRNGASGYAITLFDEKIEQVRLCAIERLIRMKLKRKEI 379


>gi|312373567|gb|EFR21282.1| hypothetical protein AND_17289 [Anopheles darlingi]
          Length = 744

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A+   + ++ V TKR  +D+T  +     R   +H +    ER  ++   R G+  +LV 
Sbjct: 362 AEPDTKTIIFVETKRRVDDITRIVNRNGWRAVAIHGDKSQQERDYVLSAFRNGRQGILVA 421

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  +    +  IGR  R+ N+    Y      +  
Sbjct: 422 TDVAARGLDVEDVKFVINYD-----YPSNSEDYVHRIGRTGRSNNTGTA-YTLFTHSNAN 475

Query: 699 LAIDETTRRRE 709
            A D     RE
Sbjct: 476 KANDLINVLRE 486


>gi|307174080|gb|EFN64767.1| ATP-dependent RNA helicase abstrakt [Camponotus floridanus]
          Length = 620

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 80/230 (34%), Gaps = 17/230 (7%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D  H  +  +S            + + GF      D R + F  +   R  T++ SAT
Sbjct: 322 LMDMLHKKMVTLSVCRYLCMDEADRMIDMGFE----EDVRTI-FSFFRGQR-QTLLFSAT 375

Query: 532 PGSWELEQCQGIIVEQIIRPTG-----LVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                    +  +V+ +    G      ++   E+   + Q   +   +    +    +L
Sbjct: 376 MPKRIQNFARSALVKPVTINVGRAGAASMNVIQEVEYVK-QEAKIVYLLECLQKTAPPVL 434

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +    KR  + + EYL  + +    +H  +   ER   +   R G+ DVLV  ++  +GL
Sbjct: 435 IFAEKKRDVDAIHEYLLIKGVEAVAIHGGIDQEERSRSVEAFRGGRKDVLVATDVASKGL 494

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           D  +   V   D           + +  IGR  R+  + +          
Sbjct: 495 DFADVQHVINYD-----MPDDVENYVHRIGRTGRSGRTGIATTFINKAND 539


>gi|295099295|emb|CBK88384.1| Superfamily II DNA/RNA helicase required for DNA uptake (late
           competence protein) [Eubacterium cylindroides T2-87]
          Length = 385

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 14/190 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRS--ARTQVEDVYDEIN 576
           +   +++SATP    L++ +   +E +    RP        ++       QV  +     
Sbjct: 191 KGQRVLLSATPDEESLQKIKQKEMEMVTLFERPHKHPLVVPKVYECNLFFQVLMIIGCCY 250

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q  ++L+ V  ++    L   L     R   +HS+  T E+ EI+   R    DVL
Sbjct: 251 SWIRQSKQVLVFVPRRQDCIWLNTILK-LFFRSSMIHSQ--TKEKDEILDQFRQKGLDVL 307

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV---ILYADTI 693
           V   LL  G+ +P    V +  AD   F  +  SLIQ  GR  R+ +      +      
Sbjct: 308 VCTTLLERGITVPSVQ-VIVCQADHAVF--TSASLIQIFGRVGRSFDDPTGKGVCLCFQK 364

Query: 694 TKSIQLAIDE 703
            ++I+  +D+
Sbjct: 365 NQAIKECVDQ 374


>gi|225374820|ref|ZP_03752041.1| hypothetical protein ROSEINA2194_00440 [Roseburia inulinivorans DSM
           16841]
 gi|225213389|gb|EEG95743.1| hypothetical protein ROSEINA2194_00440 [Roseburia inulinivorans DSM
           16841]
          Length = 531

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 67/167 (40%), Gaps = 10/167 (5%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT   P     ++ Q   V   +    L  P +E      + +D  + +     
Sbjct: 181 QTVLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPSIEQYYYDVKRKDKTEVLTRLLD 240

Query: 581 --QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                  L+   TK+M ++L+E L  R      +H ++K  +R  +++  R G+ ++L+ 
Sbjct: 241 YYNPKLSLVFCNTKKMVDELSEELKSRGYMAEGLHGDMKQAQRDRVMKAFRSGRVEILIA 300

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            ++   G+D+ +   V   D       +     +  IGR  R   + 
Sbjct: 301 TDVAARGIDVDDVEAVFNYD-----IPQDDEYYVHRIGRTGRAGRTG 342


>gi|224135925|ref|XP_002322195.1| predicted protein [Populus trichocarpa]
 gi|222869191|gb|EEF06322.1| predicted protein [Populus trichocarpa]
          Length = 450

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 67/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSAT-PGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E           + II  Q ++    +   VE+     + + +   +
Sbjct: 248 QTLYWSATWPREVEALARHFLHNPYKVIIGSQDLKANQSIKQVVEVMMDLEKYKRLIKLL 307

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G RIL+ + TK+  + +T  L         +H +    ER  ++ + + G+  +
Sbjct: 308 KEVMD-GSRILIFMETKKGCDQVTRQLRMDGWAALSIHGDKNQAERDWVLAEFKSGRSPI 366

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  S    +  IGR  R       L   T + 
Sbjct: 367 MTATDVAARGLDVKDIKCVVNYD-----FPSSLEDYVHRIGRTGRAGARGTALTFFTESN 421

Query: 696 S 696
           +
Sbjct: 422 A 422


>gi|169628494|ref|YP_001702143.1| cold-shock DEAD box protein A homolog (ATP-dependent RNA helicase
           DEAD homolog) [Mycobacterium abscessus ATCC 19977]
 gi|169240461|emb|CAM61489.1| Probable cold-shock DEAD box protein A homolog (ATP-dependent RNA
           helicase DEAD homolog) [Mycobacterium abscessus]
          Length = 598

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++ V TK+  E++ + L  R      ++ ++   +R   I  L+ G  D+LV  ++ 
Sbjct: 263 EAMIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVATDVA 322

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           S +  IGR  R   S   +L+     + +  AI
Sbjct: 323 ARGLDVERISHVLNYD-----IPHDTESYVHRIGRTGRAGRSGTAVLFVSPRERHLLKAI 377

Query: 702 DETT 705
           ++TT
Sbjct: 378 EKTT 381


>gi|54026546|ref|YP_120788.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
 gi|54018054|dbj|BAD59424.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
          Length = 1148

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 13/189 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR----TQVEDVYDEIN 576
           +  T++ SAT PG         +     IR     D  V  R+A+        D  + I 
Sbjct: 220 KRQTMLFSATMPGPIITLARTFLTRPTHIRAEEPHDSAVHDRTAQFVYRAHALDKAELIA 279

Query: 577 LAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              Q   R   ++   TKR A+ + + L ER   V  +H ++  ++R + +   R G  D
Sbjct: 280 RVLQAEGRGATMIFTRTKRTAQKVADDLAERGFAVGAVHGDLGQVQREKALDKFRKGVID 339

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           VLV  ++   G+DI +   V             + + +  IGR  R   + V +   D  
Sbjct: 340 VLVATDVAARGIDIDDVTHVINYQC-----PEDEKTYVHRIGRTGRAGRTGVAVTLIDWD 394

Query: 694 TKSIQLAID 702
             +   AID
Sbjct: 395 ELNRWAAID 403


>gi|332028992|gb|EGI69006.1| ATP-dependent RNA helicase vasa [Acromyrmex echinatior]
          Length = 795

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 85/255 (33%), Gaps = 37/255 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++I            + +  +  +   +  R     + GF LP           
Sbjct: 420 TPGRLLDFIGRG--------KIRLSSLRFLVLDEADRM---LDMGF-LPDIEKLIDH--- 464

Query: 517 EWNCLRP----TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV-----DPPVEIRSARTQ 567
               + P     T++ SAT  +   E     +   +    G+V     D       A  Q
Sbjct: 465 --ETMAPAEERQTLMFSATFPNEIQELASRFLRNYLFLAVGIVGGACADVEQNFYQASGQ 522

Query: 568 VED---VYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            E    + + I    Q G     L+ V  KR  + +  +L E N     +H +    ER 
Sbjct: 523 SEKRKLLKELIEKQHQLGNIEGTLVFVEQKRHTDFIAAFLSESNFPTTSIHGDRLQRERE 582

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E + D + GK  +LV   +   GLDI     V   D  K     +    +  IGR  R  
Sbjct: 583 EALYDFKRGKMLILVATAVAARGLDIKNVSHVINFDLPK-----TIDEYVHRIGRTGRVG 637

Query: 683 NS-KVILYADTITKS 696
           N  K   + D+ T  
Sbjct: 638 NRGKATSFFDSSTDM 652


>gi|326493772|dbj|BAJ85348.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 205 YDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE 264

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 265 EWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDII 322

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R  R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 323 MRQFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 377

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 378 GVAINFVTREDERMLFDI 395


>gi|294142598|ref|YP_003558576.1| ATP-dependent RNA helicase RhlB [Shewanella violacea DSS12]
 gi|293329067|dbj|BAJ03798.1| ATP-dependent RNA helicase RhlB [Shewanella violacea DSS12]
          Length = 438

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 15/238 (6%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D     I  +S +          + + GF      D R L     +      ++ SAT
Sbjct: 145 IIDYVRQGIINLSAIQAVVLDEADRMFDLGFI----KDIRFLFRRMPDAKSRLNMLFSAT 200

Query: 532 PGSWELEQCQGIIVE---QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG--LRIL 586
                 E     + E    +I P       ++       +++    +    ++    + +
Sbjct: 201 LSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPSMDEKMRLLLSLIEEDWPEKAI 260

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +   TK   E++  +L     RV  +  +V   +RI I+     G+ D+LV  ++   GL
Sbjct: 261 VFSNTKHSCENVWSWLSGDGHRVGLLTGDVPQKKRIRILEQFTTGELDILVATDVAARGL 320

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
            I +   V   D             +  IGR  R     + I +A         AI+E
Sbjct: 321 HISDVSHVYNYD-----LPDDCEDYVHRIGRTGRAGKKGISISFACEEYALNLPAIEE 373


>gi|256273812|gb|EEU08734.1| Dbp2p [Saccharomyces cerevisiae JAY291]
          Length = 547

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 81/212 (38%), Gaps = 26/212 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E++Q     +   I+          +  +   VE+ S   + + +   
Sbjct: 293 QTLMWSAT-WPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKY 351

Query: 575 INLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +  A+Q    + L+   TKRM +D+T+YL E       +H +    ER  ++++ R G+ 
Sbjct: 352 LETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRS 411

Query: 634 DVLVGINLLREGL-DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            ++V  ++   G+ ++     V   D        +    +  IGR  R   +   I +  
Sbjct: 412 PIMVATDVAARGIGNVKGINYVINYD-----MPGNIEDYVHRIGRTGRAGATGTAISFFT 466

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
              K +          +   +      NI P+
Sbjct: 467 EQNKGLGA--------KLISIMREANQNIPPE 490


>gi|153955940|ref|YP_001396705.1| RNA helicase [Clostridium kluyveri DSM 555]
 gi|219856282|ref|YP_002473404.1| hypothetical protein CKR_2939 [Clostridium kluyveri NBRC 12016]
 gi|146348798|gb|EDK35334.1| Predicted RNA helicase [Clostridium kluyveri DSM 555]
 gi|219570006|dbj|BAH07990.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 524

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 21/190 (11%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TKR  ++L E +  R   V  MH ++   +R+  +R  + G  D LV  ++   
Sbjct: 246 AIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLDFLVATDVAAR 305

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+D+     V   D       +   S +  IGR  R     +     T  + I L     
Sbjct: 306 GIDVENVSHVINYD-----LPQDTESYVHRIGRTGRANKEGIAYSLVTPREYILL----- 355

Query: 705 TRRREKQLEHNKKHNINP----------QSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
            ++ EK  +   K    P          ++++EKI +VI     ++       +D +   
Sbjct: 356 -KQIEKFTKSKIKRKDIPTIDEIFEAKYKNIEEKIKKVISENNYKNFIPIATELDEEYNL 414

Query: 755 LSKKKGKAHL 764
           +        +
Sbjct: 415 VDVAASLMKI 424


>gi|143454263|sp|Q5N7W4|RH30_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 30
          Length = 666

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 67/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSAT-PGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E           + II    ++    +   +E+ S   +   +   +
Sbjct: 431 QTLYWSATWPREVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKYPRLSKLL 490

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +     G RIL+   TK+  + +T  L         +H +    ER  ++ + + GK  +
Sbjct: 491 SDLMD-GSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPI 549

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  +    I  IGR  R   S       T++ 
Sbjct: 550 MAATDVAARGLDVKDIKCVINFD-----FPTTLEDYIHRIGRTGRAGASGTAFTFFTLSN 604

Query: 696 S 696
           +
Sbjct: 605 A 605


>gi|145481077|ref|XP_001426561.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393636|emb|CAK59163.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 68/184 (36%), Gaps = 21/184 (11%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVE----------DV 571
              +VVSAT     L+     +   +       +  +E I+    QV+          D+
Sbjct: 196 TQNVVVSATLPQEILDMTDKFMNNPLKILVKRDELTLEGIKQFFIQVDKEEWKFDTLCDL 255

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           YD + +      + ++   T    E L   + E    V  M+ ++   ER +I+ + R G
Sbjct: 256 YDTLTIT-----QAVIFCSTINKCEWLANKMREHEFTVVQMNGKMSQKERDKIMAEFRQG 310

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
              VL+  ++   GLD+ +  LV   D        S+   I  IGR+ R     V +   
Sbjct: 311 NKRVLIATDVWGRGLDVQQVSLVINYD-----LPNSRELYIHRIGRSGRFGRKGVAINFV 365

Query: 692 TITK 695
               
Sbjct: 366 KQED 369


>gi|50289021|ref|XP_446940.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661294|sp|Q6FS54|DBP3_CANGA RecName: Full=ATP-dependent RNA helicase DBP3
 gi|49526249|emb|CAG59873.1| unnamed protein product [Candida glabrata]
          Length = 540

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 69/177 (38%), Gaps = 17/177 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI---------IRPTGLVDPPVEI---RSARTQVEDV 571
            T++ +AT      E     + E +         +     +   VE+   RS   ++ D+
Sbjct: 306 QTLMFTATWPKEVRELASTFMKEPVKVSIGNRDELSANKRITQIVEVVDPRSKERKLLDL 365

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             +     ++  ++L+  L K+ A  +   L     +V  +H ++   +R + + + + G
Sbjct: 366 LKKYQSGPKKNDKVLIFALYKKEASRVERNLNYNGYKVAAIHGDLSQQQRTQALNEFKSG 425

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           K ++L+  ++   GLDIP    V  L      F  +    +  IGR  R   +    
Sbjct: 426 KSNLLLATDVAARGLDIPNVKTVINL-----TFPLTVEDYVHRIGRTGRAGQTGTAH 477


>gi|15603786|ref|NP_246860.1| ATP-dependent RNA helicase RhlB [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|32363392|sp|Q9CJS1|RHLB_PASMU RecName: Full=ATP-dependent RNA helicase rhlB
 gi|12722355|gb|AAK04005.1| RhlB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 423

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 89/249 (35%), Gaps = 28/249 (11%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +D       +I  +   +  R   L   GF      D R L  +     
Sbjct: 144 IDYV-KQGIVRLD-------KIQVVVLDEADRMFDL---GFI----KDIRYLLRKCPAPQ 188

Query: 522 RPTTIVVSATPGSWELEQCQGIIVE------QIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
              T++ SAT      E     + +      + ++ TG      E+     Q +      
Sbjct: 189 HRLTMLFSATLSYKVRELAFEDMNDPEYVEIEPLQKTGHRIKE-ELFYPSNQDKMALLLT 247

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            L  +   R ++   TK   ED+  YL     RV  +  +V   +R+ +++    G  D+
Sbjct: 248 LLEEEWPERCIIFANTKHRCEDIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTEGHLDI 307

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GL I +   V   D         +   +  IGR  R   S V I +A    
Sbjct: 308 LVATDVAARGLHISDVSHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFACEEY 362

Query: 695 KSIQLAIDE 703
                AI+E
Sbjct: 363 AMNLPAIEE 371


>gi|325924306|ref|ZP_08185850.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325545171|gb|EGD16481.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 523

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+              +  +             + + GF      D R L   
Sbjct: 86  TPGRLIDYV----------KQHKVVSLHACEICVLDEADRMFDLGFI----KDIRFLLRR 131

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIR---SARTQVED 570
                   T++ SAT     LE     + E    ++    +    V  R    +  + + 
Sbjct: 132 MPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQT 191

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +   ++ G R ++ V TK   E +   L     RV  +  +V   +R  ++   + 
Sbjct: 192 LLLGLLSRSE-GARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK 250

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           G+ ++LV  ++   GL I     V   D             +  IGR AR       I +
Sbjct: 251 GQLEILVATDVAARGLHIDGVKYVYNYD-----LPFDAEDYVHRIGRTARLGEEGDAISF 305

Query: 690 ADT 692
           A  
Sbjct: 306 ACE 308


>gi|321261964|ref|XP_003195701.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
 gi|317462175|gb|ADV23914.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
          Length = 549

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 65/193 (33%), Gaps = 13/193 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIR----SARTQVEDVYDEIN 576
             ++ SAT      E       E     +R   +    +        +  Q  +    + 
Sbjct: 327 QNVLFSATFNDDVQEFADRFAPEANKIFLRKEDITVDAIRQLYLECDSEDQKYEALSALY 386

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G  I +    K  A+ + E L      V  +H +  + ER  I+   R G+  VL
Sbjct: 387 DCLVIGQSI-VFCKRKATADHIAERLISEGHAVASLHGDKFSQERDAILDGFRNGETKVL 445

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTS---LIQTIGRAARNVN--SKVILYAD 691
           +  N++  G+DIP   +V   D    G   S       I  IGR  R       V+   D
Sbjct: 446 ITTNVIARGIDIPAVNMVVNYDVPDLGPGGSGPDIETYIHRIGRTGRFGRKGCSVVFTHD 505

Query: 692 TITKSIQLAIDET 704
             +KS    I  T
Sbjct: 506 YRSKSDVERIMNT 518


>gi|313633504|gb|EFS00323.1| ATP-dependent RNA helicase DbpA [Listeria seeligeri FSL N1-067]
 gi|313638189|gb|EFS03441.1| ATP-dependent RNA helicase DbpA [Listeria seeligeri FSL S4-171]
          Length = 470

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 87/254 (34%), Gaps = 27/254 (10%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           ++   +   +  SAT    E++       E  +      +    I     Q E+    + 
Sbjct: 167 QFLPKKRQNLFFSAT-MPDEMQDLIKRYQEDPVVIEMAAEKTNPITHIEMQTENKEKTLQ 225

Query: 577 LA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                +     ++   TK   ++L++ L    +    +H  ++  ER   + D + GK  
Sbjct: 226 DVLITENPDSAIIFCNTKNQVDELSDLLQ---VNAAKIHGGLRQEERFRAMDDFKSGKSR 282

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTI 693
            L+  ++   G+D+    LV   D   E     K + +  IGR  R  NS K I +  T 
Sbjct: 283 FLIATDVAGRGIDVENVTLVINYDLPIE-----KENYVHRIGRTGRAGNSGKAISFVKTN 337

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
              +   I++               NI  +  K++   +I+    E+A            
Sbjct: 338 ENPLLRDIEDML-------------NITIE--KKRKPTIIEVKASEEAFRKKQQKRPTIK 382

Query: 754 SLSKKKGKAHLKSL 767
               +K   ++  L
Sbjct: 383 KARGEKLNKNIMKL 396


>gi|125537372|gb|EAY83860.1| hypothetical protein OsI_39082 [Oryza sativa Indica Group]
          Length = 630

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           V  E+     +G + ++   TKR A+ L+ Y   R+ + + +H ++   +R   ++  R 
Sbjct: 331 VLGELIKEHAKGGKCIVFTQTKRDADRLS-YTMGRSFQCQALHGDITQAQRERTLKGFRE 389

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G F++L+  ++   GLDIP   LV            S    +   GR  R       +  
Sbjct: 390 GHFNILIATDVAARGLDIPNVDLVI-----HFELPNSSELFVHRSGRTGRAGKKGKAIVM 444

Query: 691 DTITKSIQLAIDETT 705
            +  +S  + + E  
Sbjct: 445 HSYQQSRAIRMVEND 459


>gi|227525|prf||1705301A ATP dependent RNA helicase
          Length = 697

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 62/171 (36%), Gaps = 13/171 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV-------DPPVEIRSARTQVEDVYDE 574
              T++ SAT         +  + E I    G V          V       + + + D 
Sbjct: 416 VRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRDFLLDL 475

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +N   +  L  L+ V TK+ A+ L ++LYE       +H +    +R E +   R GK  
Sbjct: 476 LNATGKDSL-TLVFVETKKGADALEDFLYEEGYACTSIHGDRSQRDREEALHQFRSGKSP 534

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +LV   +   GLDI     V   D             ++ IGR  R  N  
Sbjct: 535 ILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVERIGRTGRVGNLG 580


>gi|126461963|ref|YP_001043077.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103627|gb|ABN76305.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 516

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 82/262 (31%), Gaps = 39/262 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++     LL       T  QI  +   D      + + GF  P       L   
Sbjct: 130 TPGRLLDHFERGKLLL------TGVQIMVVDEADR-----MLDMGFI-PDIERIFSLTP- 176

Query: 517 EWNCLRPTTIVVSATPGSWELEQ---------CQGIIVEQIIRPTGLVDPPVEI------ 561
                   T+  SAT    E+E+          +  +  Q      +    +++      
Sbjct: 177 ----FTRQTLFYSATMAP-EIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKE 231

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           RS   +   +   I    +     ++    K   + + + L +       +H +++  +R
Sbjct: 232 RSFADKRAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQR 291

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           ++ +   R G   +LV  ++   GLDIP    V   D             +  IGR  R 
Sbjct: 292 MKTLDGFRDGSLHLLVASDVAARGLDIPAVSHVFNFDV-----PTHPEDYVHRIGRTGRA 346

Query: 682 VNS-KVILYADTITKSIQLAID 702
               K    A    +    AI+
Sbjct: 347 GRKGKAYTIAVPSDEKHVTAIE 368


>gi|325192175|emb|CCA26630.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 627

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T + SAT    E+++     ++  I          +  V   +E      + ED     
Sbjct: 340 QTFMFSAT-FPREMQRLAADFLQDYIFLTVGRVGSASKDVKQQIEFIEPHDK-EDYLVRF 397

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               Q+GL IL+ V TKR A+ L + L         +H +    ER   +   R G+  V
Sbjct: 398 LNQVQEGL-ILVFVETKRGADYLEQLLCREGFPATSIHGDRTQREREAALNSFRSGRTPV 456

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           LV  ++   GLDI     V   D        +    +  IGR  R  N  
Sbjct: 457 LVATDVAARGLDINGVTHVINFD-----LPNNIDDYVHRIGRTGRAGNLG 501


>gi|302765623|ref|XP_002966232.1| hypothetical protein SELMODRAFT_143895 [Selaginella moellendorffii]
 gi|300165652|gb|EFJ32259.1| hypothetical protein SELMODRAFT_143895 [Selaginella moellendorffii]
          Length = 412

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 78/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    + SAT  P + E+ +       +I+         G+    V +   
Sbjct: 203 YDIFQLLPAKVQVGLFSATMPPEALEITRKFMSNPVRILVKRDELTLEGIKQFYVNVERE 262

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++   T+R  + LT+ L  R+  V   H ++    R  I
Sbjct: 263 DWKLDTLCDLYETLAIT--QSVIFCNTRRKVDWLTDKLRSRDHTVSATHGDMDQNTRDII 320

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 321 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 375

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 376 GVAINFLTKDDEKMLFDI 393


>gi|296116253|ref|ZP_06834870.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977187|gb|EFG83948.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 431

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (35%), Gaps = 37/228 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVE--DVYDEINL 577
            T++ SAT      E   G++ +    Q+  P+  VD    IR A   V+  +  + + L
Sbjct: 182 QTLLFSATMPKSISELAHGLLRDPATVQVTPPSSTVDR---IRQAVMYVDTGNKREALKL 238

Query: 578 AAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                +  R ++  L K  A  +  +L E  I    +H       R   +   R G   V
Sbjct: 239 LVDSPKVERAVVFTLMKHEANKVAAFLNEHGITAEAIHGNKSQGARERAMSGFRSGAVKV 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTIT 694
           LV  ++   G+D+ +   V   D           S +  IGR AR   +   +   D   
Sbjct: 299 LVATDIAARGIDVDDVTHVFNYD-----LPNVPESYVHRIGRTARAGRDGWAVSLCDAEQ 353

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
           ++    I+                    +++ +KI  V++     +AA
Sbjct: 354 RAWLRDIE--------------------KTIGKKIPVVLEHPYHSEAA 381


>gi|291229468|ref|XP_002734695.1| PREDICTED: DEAD-box protein abstrakt-like [Saccoglossus
           kowalevskii]
          Length = 650

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 66/186 (35%), Gaps = 17/186 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTG-----LVDPPVEIRSARTQVEDVYDEINLA 578
            T++ SAT         +  +V+ I    G      +D   E+   + Q   +   +   
Sbjct: 398 QTLLFSATMPKKIQNFARSALVKPITVNVGRAGAASLDVLQEVEYVK-QEAKMVYLLECL 456

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +    +L+    K   +D+ EYL  + +    +H      ER   I   R    DVLV 
Sbjct: 457 QKTQPPVLIFAEKKSDVDDIHEYLLLKGVEAVAIHGGKDQEERTRAIDQFRKAIKDVLVA 516

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++  +GLD P+   V   D           + +  IGR  R   + +          I 
Sbjct: 517 TDVASKGLDFPDIQHVINYD-----MPEDIENYVHRIGRTGRCGKTGIATTF------IN 565

Query: 699 LAIDET 704
            A DE+
Sbjct: 566 KACDES 571


>gi|146101459|ref|XP_001469120.1| ATP-dependent RNA helicase [Leishmania infantum]
 gi|134073489|emb|CAM72220.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
          Length = 924

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 15/187 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQ--------IIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T + SAT     L   +  +  +        +   T  +   +E      +++ +   I
Sbjct: 656 QTFMFSATFPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDNEKMDRLLQII 715

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  + +L+ V TK+MAED+   L+   I    +H + +  +R   + D +     +
Sbjct: 716 YGHEMSDM-VLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPI 774

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP+   V   D  +E            IGR  R  N   I  A     
Sbjct: 775 LVATDVASRGLDIPDVAHVVQFDLPQE-----MDDYTHRIGRTGRAGNKG-IATAFYNRN 828

Query: 696 SIQLAID 702
           + +LA+D
Sbjct: 829 NRRLALD 835


>gi|302525261|ref|ZP_07277603.1| ATP-dependent RNA helicase [Streptomyces sp. AA4]
 gi|302434156|gb|EFL05972.1| ATP-dependent RNA helicase [Streptomyces sp. AA4]
          Length = 613

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 11/138 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D  D I     +  R ++ V TK   + LTE L E  +    +H      +R  ++ D +
Sbjct: 308 DKQDIITRIGAREGRTIMFVRTKHHVDRLTERLRESGVHAVALHGGKTQGQRNRVLADFK 367

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  ++   G+ +    LV  +D             +   GR AR   S +++ 
Sbjct: 368 EGHAAVLVATDVAARGIHVDNISLVLHVDP-----AADHKDYLHRAGRTARAGASGIVVT 422

Query: 690 ADTITKSIQLAIDETTRR 707
             T  +        T RR
Sbjct: 423 LVTHDQR------RTVRR 434


>gi|270016294|gb|EFA12740.1| hypothetical protein TcasGA2_TC002367 [Tribolium castaneum]
          Length = 668

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            +I++ V TK+  +D+T+ +         +H +    ER  ++ + R GK  +LV  ++ 
Sbjct: 324 NKIIVFVETKKKVDDITKCIRREGYAAISIHGDKSQPERDYVLSEFRTGKSSILVATDVA 383

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
             GLD+ +   V   D     +  S    +  IGR  R   +    YA   + + + A D
Sbjct: 384 ARGLDVEDVKYVINFD-----YPNSSEDYVHRIGRTGRCQQAGTA-YAFFTSNNQRQAKD 437


>gi|149179168|ref|ZP_01857736.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
 gi|148841986|gb|EDL56381.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
          Length = 445

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 83/253 (32%), Gaps = 28/253 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         +++ H+ + Q+      +  R     + GF LP           
Sbjct: 132 TPGRLLD--------LMNQGHIKLNQLEVFVLDEADRM---LDMGF-LPDLKRIITQLPT 179

Query: 517 EWNCLRPTTIVVSAT--PGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           +       ++  SAT  P   EL      + + V    + T +     ++       +  
Sbjct: 180 Q-----RQSLFFSATLAPKITELAHSLLSKPVTVNVTPKTTSVEKIQQQLMFVERNFKQP 234

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             +  L   +  R L+   TKR A  L++ L     +   +H       R + +   R  
Sbjct: 235 LLQKILGGDEVERALVFTKTKRTANTLSQRLVRSGFKATAIHGNKSQGARQQALEAFRRK 294

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYA 690
           +  VLV  ++   G+DI     V   D   E       + +  IGR  R   N   I + 
Sbjct: 295 QVQVLVATDVAARGIDIDGITHVINFDLPVE-----PEAYVHRIGRTGRAGANGIAISFC 349

Query: 691 DTITKSIQLAIDE 703
               +    +I+ 
Sbjct: 350 SESERKELRSIER 362


>gi|325860554|ref|ZP_08173658.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
 gi|325481939|gb|EGC84968.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
          Length = 572

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 77/191 (40%), Gaps = 24/191 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG- 582
            TI+ SAT    ++E+    +++  +     V  P E      ++  +        + G 
Sbjct: 183 QTIMFSAT-MPKKIEELAKTLLKNPVEIKLAVSKPAE------KIHQMAYVCYETQKMGI 235

Query: 583 ----------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      R+++   +K+  + +   L  ++I    MHS++   +R +++   + G+
Sbjct: 236 IKDIFKAGDLKRVIIFSGSKQKVKQIAASLGRKHINCGEMHSDLDQEQRNDVMFKFKSGQ 295

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691
            DVLV  +++  G+DI +  +V   D             +  IGR AR + + K I + +
Sbjct: 296 IDVLVATDIVARGIDIDDIAMVINYDV-----PHDAEDYVHRIGRTARADRDGKAITFVN 350

Query: 692 TITKSIQLAID 702
                    I+
Sbjct: 351 VDDIYYFKQIE 361


>gi|312140644|ref|YP_004007980.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|325675727|ref|ZP_08155411.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
 gi|311889983|emb|CBH49301.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
 gi|325553698|gb|EGD23376.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
          Length = 545

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 70/189 (37%), Gaps = 13/189 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART----QVEDVYDEIN 576
           +  T++ SAT PG         +     IR        V  R+ +        D  + + 
Sbjct: 226 KRQTMLFSATMPGPIITLARTFLTQPTHIRAEEADSSAVHERTTQHIYRAHALDKAEMVA 285

Query: 577 LAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              Q   R   ++   TKR A+ + + L ER   V  +H ++  + R + +   R GK D
Sbjct: 286 RVLQADGRGATMIFTRTKRTAQKVADDLNERGFNVGAVHGDLGQIAREKALAGFRSGKVD 345

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           VLV  ++   G+DI +   V             + + +  IGR  R   + + I   D  
Sbjct: 346 VLVATDVAARGIDIDDVTHVINY-----QCPEDEKTYVHRIGRTGRAGRTGIAITLVDWD 400

Query: 694 TKSIQLAID 702
                  ID
Sbjct: 401 DVPRWQLID 409


>gi|281490897|ref|YP_003352877.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281374655|gb|ADA64175.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
           lactis subsp. lactis KF147]
          Length = 547

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 100/252 (39%), Gaps = 11/252 (4%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLA 578
              T++ SAT P   +    + +   + I+     +    ++    +T+  + +D +   
Sbjct: 174 ARQTLLFSATMPNDIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRL 233

Query: 579 --AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              ++    ++   TKR  ++L   L  R  R   MH ++   +R+ ++RD + G  DVL
Sbjct: 234 LDVERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLD+     V   D       + + S +  IGR  R   S   + +      
Sbjct: 294 VATDVAARGLDVSGVTHVYNYDIT-----QDQESYVHRIGRTGRAGKSGRSVTFVSYNEM 348

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
               AI+  T++  K L+   K      S+   + +V+  +  + A       D Q  SL
Sbjct: 349 GYLRAIENMTKKPMKGLKPPTKEEAYQASLSVAMDDVLRDLSDDSAKAKLAKFDKQAASL 408

Query: 756 SKKKGKAHLKSL 767
            +K     L +L
Sbjct: 409 LEKFDAKELVAL 420


>gi|257064977|ref|YP_003144649.1| DNA/RNA helicase, superfamily II [Slackia heliotrinireducens DSM
           20476]
 gi|256792630|gb|ACV23300.1| DNA/RNA helicase, superfamily II [Slackia heliotrinireducens DSM
           20476]
          Length = 657

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 73/193 (37%), Gaps = 29/193 (15%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR---SARTQVEDVYDEINLAAQ 580
            T++ SAT     +++ Q  ++  ++    +    +EI         V+          +
Sbjct: 184 QTLLFSAT-----IDRSQDKVMFSLLNHPEI----IEISHRGDTADLVDQYIIWTGRREK 234

Query: 581 -----------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                       G R+++   TK  A++ T  L +  I    +H++    +R   +   R
Sbjct: 235 PALLNAFIREKGGFRVIVFTKTKGGADNCTRRLCKIGIGAEAIHADRSQAQRQRALERFR 294

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-VNSKVIL 688
            GK  V+V  ++L  G+D+PE   V   D             +  IGR  R  V    + 
Sbjct: 295 EGKTHVIVATDVLARGIDVPEVDYVVNYDLPMM-----PEDYVHRIGRTGRAGVAGYAVS 349

Query: 689 YADTITKSIQLAI 701
           +    TK++  +I
Sbjct: 350 FVTPDTKNLLRSI 362


>gi|170576579|ref|XP_001893687.1| RNA-dependent helicase [Brugia malayi]
 gi|158600176|gb|EDP37484.1| RNA-dependent helicase, putative [Brugia malayi]
          Length = 553

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 6/140 (4%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
            VEI     + + +   ++    +   + ++ V TKR A+DLT ++         +H + 
Sbjct: 350 IVEIIDESNKQQRLMAILSDIMNKEDCKTIIFVETKRKADDLTRWMRRDGWPALCIHGDK 409

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
              ER   + + R GK  +L+  ++   GLD+ +   V   D     +  +    +  IG
Sbjct: 410 GQSERDWALSEFRSGKTPILLATDVAARGLDVDDIKYVINFD-----YSNNSEDYVHRIG 464

Query: 677 RAARNVNSKVILYADTITKS 696
           R  R   + V     T   +
Sbjct: 465 RTGRRDKTGVAYTFFTYANA 484


>gi|145499813|ref|XP_001435891.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124403027|emb|CAK68494.1| unnamed protein product [Paramecium tetraurelia]
          Length = 402

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 45/221 (20%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT             P   E+   + + ++ + +    +D   ++ S    +  
Sbjct: 211 QIMMFSATFPVDVKGFINEHVPQIQEINLMEELTLKGVTQYYLYIDEKQKVNSNLKLI-- 268

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                        + ++   + R  E LT+ + E      Y+H+++   +R ++    R 
Sbjct: 269 -------------KAIIFCNSARRVELLTQKITEFGYSCFYIHAKMNQKDRNKVFHSFRK 315

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
                LV  +L   G+DI    +V   D     F R+  + +  IGR+ R  +  + +  
Sbjct: 316 AVGRCLVSTDLFTRGIDIQSVNVVINFD-----FPRTAETYLHRIGRSGRFGHLGLAVNF 370

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNIN--PQSVKEKI 729
                     I ET +    Q+E     +I   P+ V + +
Sbjct: 371 ----------ITETDKDTLVQIEQELDTDIKPFPKEVDKSL 401


>gi|47221681|emb|CAG10153.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 359

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 13/143 (9%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V T+R AE LT+ L  ++  V  +HSE+   ER   +++ R G   V +  +LL 
Sbjct: 227 QAVIFVNTRRKAEWLTQELTSKDFTVSVLHSEMGQSERDTTMKEFRSGSSRVFITTDLLA 286

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            G+++    LV   D        S  + I  IGR+ R     V +   T      L    
Sbjct: 287 RGINVQHASLVINFD-----LSTSLENYIHRIGRSGRFGRKGVAINMVTEETQHMLT--- 338

Query: 704 TTRRREKQLEHNKKHNINPQSVK 726
                + Q  ++ K    P +V 
Sbjct: 339 -----KIQNFYDTKIEELPANVA 356


>gi|326793753|ref|YP_004311573.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326544517|gb|ADZ89737.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 425

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 89/264 (33%), Gaps = 29/264 (10%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD-NRPLRF 515
            P  L +   ++++        +  Q+  +   +  R     + GF      D  R L+ 
Sbjct: 130 TPGRLLDLFSQNAI--------SFKQLEILVLDEADRM---LDMGFI----HDIKRILKL 174

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVEDVYDE 574
                    T++ SAT      E  Q ++ + +       +  VE+ R +   V+     
Sbjct: 175 LPKER---QTLLFSATFSDDIRELAQNVVKDAVEVSVTPPNTTVEVIRQSLIPVDKSKKS 231

Query: 575 INLAAQQGLR----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             L      R    +L+   TK  A  L     +  I    +H       R + +   + 
Sbjct: 232 AALKFLIQSRDLSQVLVFSRTKHGANRLATLFQKAGIEAAAIHGNKSQGARTKALAGFKS 291

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+  VLV  ++   G+DI +   V   D             +  IGR  R   +   +  
Sbjct: 292 GEIRVLVATDIAARGIDIDQLPHVVNFD-----LPNVPADYVHRIGRTGRAGATGEAISL 346

Query: 691 DTITKSIQLAIDETTRRREKQLEH 714
            +  ++ QL+  E   R+    ++
Sbjct: 347 VSEDEADQLSDIENLIRKPIPRDY 370


>gi|313619263|gb|EFR91012.1| ATP-dependent RNA helicase DbpA [Listeria innocua FSL S4-378]
          Length = 435

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 87/252 (34%), Gaps = 31/252 (12%)

Query: 521 LRPTTIVVSATPGSWELEQ--CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
            +   +  SAT    E++    +      +I        P+       Q ++    +   
Sbjct: 136 KQRQNLFFSAT-LPEEMQDLIKRYQDNPMVIEMASEKTNPI--FHVEMQTDNKEKTLKDV 192

Query: 579 --AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +     ++   TK   ++LT+ L   +++   +H  ++  +R   + D + GK   L
Sbjct: 193 LITENPDSAIIFCNTKNQVDELTDLL---DVKASKIHGGLRQEDRFRAMDDFKSGKSRFL 249

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITK 695
           +  ++   G+D+    LV   D   E     K + +  IGR  R   S K I +  T   
Sbjct: 250 IATDVAGRGIDVDNVSLVINYDLPIE-----KENYVHRIGRTGRAGKSGKAISFVKTNEN 304

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
            +   I+E               NI  +  K++   +I+    E+A              
Sbjct: 305 PLLRDIEEML-------------NITIE--KKRKPTIIEVKANEEAFRKKQQKRPTIKKA 349

Query: 756 SKKKGKAHLKSL 767
             +K   ++  L
Sbjct: 350 RGEKLNKNIMKL 361


>gi|312067818|ref|XP_003136922.1| Ddx49-A-prov protein [Loa loa]
 gi|307767911|gb|EFO27145.1| Ddx49-A-prov protein [Loa loa]
          Length = 478

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 76/193 (39%), Gaps = 27/193 (13%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           IL+   T R  + L    +    +V  +HS++   ER   +   R G+  +L+  ++   
Sbjct: 292 ILIFSHTCRECQALAIMFHGLGFQVGSLHSQISQQERTSSLTKFRSGRIKILICTDVASR 351

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLDIP   LV   +       ++  + I  +GR+AR       L   T        + E 
Sbjct: 352 GLDIPHVDLVINHNV-----PQNPKTYIHRVGRSARAGRFGCALLFVTQYD--IFLVQEI 404

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVI--DPILLEDAATTNISIDAQQLSLSKKK-GK 761
                             + + +K+ ++I  D  + +      ++    ++ L ++  G+
Sbjct: 405 E-----------------KVIGKKLDKLIVNDKKVTQYVTQVLVTKREAEIKLDQQNFGE 447

Query: 762 AHLKSLRKQMHLA 774
             + + RK+M +A
Sbjct: 448 RKIINKRKEMLIA 460


>gi|297192239|ref|ZP_06909637.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151271|gb|EFH31061.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 539

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 15/176 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--------DVY 572
           +  T++ SAT PG+      + +     I  T   D    +R+   +V         ++ 
Sbjct: 209 KRQTMLFSATMPGAVIGLARRYMSQPTHISATSPDDEGATVRNTTQRVYRAHSMDKPEMV 268

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +GL  ++   TKR A D+ + L +R      +H ++    R + +R  R GK
Sbjct: 269 SRILQAEGRGL-AMIFCRTKRTAADIADQLAQRGFASGAVHGDLGQGAREQALRAFRNGK 327

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            DVLV  ++   G+D+     V    +        + + +  IGR  R   S   +
Sbjct: 328 VDVLVCTDVAARGIDVEGVTHVINYQS-----PEDEKTYLHRIGRTGRAGASGTAV 378


>gi|221638948|ref|YP_002525210.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131]
 gi|221159729|gb|ACM00709.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131]
          Length = 524

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 82/262 (31%), Gaps = 39/262 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++     LL       T  QI  +   D      + + GF  P       L   
Sbjct: 130 TPGRLLDHFERGKLLL------TGVQIMVVDEADR-----MLDMGFI-PDIERIFSLTP- 176

Query: 517 EWNCLRPTTIVVSATPGSWELEQ---------CQGIIVEQIIRPTGLVDPPVEI------ 561
                   T+  SAT    E+E+          +  +  Q      +    +++      
Sbjct: 177 ----FTRQTLFYSATMAP-EIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKE 231

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           RS   +   +   I    +     ++    K   + + + L +       +H +++  +R
Sbjct: 232 RSFADKRAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQR 291

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           ++ +   R G   +LV  ++   GLDIP    V   D             +  IGR  R 
Sbjct: 292 MKTLDGFRDGSLHLLVASDVAARGLDIPAVSHVFNFDV-----PTHPEDYVHRIGRTGRA 346

Query: 682 VNS-KVILYADTITKSIQLAID 702
               K    A    +    AI+
Sbjct: 347 GRKGKAYTIAVPSDEKHVTAIE 368


>gi|220913250|ref|YP_002488559.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
 gi|219860128|gb|ACL40470.1| DEAD/DEAH box helicase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 561

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 68/183 (37%), Gaps = 16/183 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--------DVY 572
              T++ SAT PG       + +     IR     D  +  R  R  +         +V 
Sbjct: 220 VRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSMDKTEVV 279

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +G R ++   TKR A  + E L +R      +H ++    R + +R  R  K
Sbjct: 280 ARILQARGRG-RTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNNK 338

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            DVLV  ++   G+D+ +   V          +  +   +  +GR  R  N    + + D
Sbjct: 339 VDVLVATDVAARGIDVDDVTHVINY-----QCVEDEKIYLHRVGRTGRAGNKGTAVTFVD 393

Query: 692 TIT 694
              
Sbjct: 394 WDD 396


>gi|89897946|ref|YP_515056.1| transcription-repair coupling factor [Chlamydophila felis Fe/C-56]
 gi|89331318|dbj|BAE80911.1| transcription-repair coupling factor-superfamily II helicase
           [Chlamydophila felis Fe/C-56]
          Length = 1084

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 76/214 (35%), Gaps = 15/214 (7%)

Query: 170 VQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYY 229
             L+  +    + F  AK     ++  I++   +     L  +  +F     +E+  S  
Sbjct: 24  PLLIENIRPGARGFLAAKFFHERKKSVIMIT-TRSCIDDLLEDLSSFLGFPPLEFPSSEI 82

Query: 230 DYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVES 289
           D       +   D   +++  + E  ++          +     V +  + +    S + 
Sbjct: 83  DLSPKLVNI---DAVGKRDKILYELCEK----------KSPVFCVTTLKALLEKTRSPKD 129

Query: 290 YSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWR 349
                + +++GD ++   ++       Y+ + +   +G F   G  I+IFP   ++  +R
Sbjct: 130 TVHQHLDIQVGDLLDPDMMIDLCKNLGYRHETLARDKGEFAYRGGIIDIFPLSSQE-PFR 188

Query: 350 VSMFGNDIEEISEFYPLTGQKIRNVETIKIYANS 383
           +  +G  I  I  F P        V  + I   +
Sbjct: 189 IEFWGEKIISIRPFNPSDQLSTGKVSKLSISPAT 222



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 56/176 (31%), Gaps = 7/176 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + VSATP    L     G     +I    L   PV         E +   +     +G 
Sbjct: 709 CLTVSATPIPRTLYMSLSGARDLSLITMPPLDRLPVSTFILEHNDETLSAALRHELLRGG 768

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +  +          L   +       R    H ++ + E   I +  +  + +VLV   L
Sbjct: 769 QAYVIHNRIESIFRLGNTIRTLVPEARIAVAHGQMSSDELASIFQKFKDQEINVLVATAL 828

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  G+DIP    + +  ADK G       L Q  GR  R        +       +
Sbjct: 829 IENGIDIPNANTILVDQADKFG----MADLYQMKGRVGRWNRKAYCYFLVPHLDRL 880



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 15/132 (11%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K++R++SE+++    + L +L    +             S+    H +++  F  +  Y 
Sbjct: 508 KRSRDLSEKSLVLYAEKLLQLEAQRST----------APSFIYPPHGEEVMKFAERFPYE 557

Query: 149 PSGDQPAAIAQLLKG-IHSREKVQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ  AI Q+    +  +   +L+ G  G GKT   M   ++A+    R  IVM P  
Sbjct: 558 ETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAVCDGHRQVIVMVPTT 617

Query: 204 ILAAQLYSEFKN 215
           ILA Q Y  F  
Sbjct: 618 ILANQHYETFSQ 629


>gi|189499774|ref|YP_001959244.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides BS1]
 gi|189495215|gb|ACE03763.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides
           BS1]
          Length = 591

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 6/157 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK    +L+E L  R      ++ ++    R + +   +   +++L+  ++   
Sbjct: 254 VIIFVRTKTQTVELSEKLRARGYASAALNGDMMQNHREKTVGQFKKSVYNILIATDVAAR 313

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+      S+   I+ 
Sbjct: 314 GLDVERISHVINYD-----IPTDTESYVHRIGRTGRAGRSGEAILFVTPREMSMLRTIER 368

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
             R+R  ++E      IN + V     ++ D +   D
Sbjct: 369 AIRKRIDRMELPSTEIINDKRVARYKQQISDTLSTAD 405


>gi|332020434|gb|EGI60854.1| Putative ATP-dependent RNA helicase DDX52 [Acromyrmex echinatior]
          Length = 558

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L   L    I V  +H++    +R   +R  R GK  VL+   L+  
Sbjct: 382 VLVFVQSKERAQELFNELIYDGINVDVIHADRTMTQRDNTVRCFREGKIWVLICTELMGR 441

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE 703
           G+D     LV   D     F  S  S I  IGR  R  +  K + +          +I  
Sbjct: 442 GIDFKGVNLVINYD-----FPPSAISYIHRIGRTGRAGHKGKAVTFFTQQDTVNLRSIAA 496

Query: 704 TTR 706
             R
Sbjct: 497 VLR 499


>gi|327313656|ref|YP_004329093.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
 gi|326944744|gb|AEA20629.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
          Length = 572

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 77/191 (40%), Gaps = 24/191 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG- 582
            TI+ SAT    ++E+    +++  +     V  P E      ++  +        + G 
Sbjct: 183 QTIMFSAT-MPKKIEELAKTLLKNPVEIKLAVSKPAE------KIHQMAYVCYETQKMGI 235

Query: 583 ----------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      R+++   +K+  + +   L  ++I    MHS++   +R +++   + G+
Sbjct: 236 IKDIFKAGDLKRVIIFSGSKQKVKQIAASLGRKHINCGEMHSDLDQEQRNDVMFKFKSGQ 295

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691
            DVLV  +++  G+DI +  +V   D             +  IGR AR + + K I + +
Sbjct: 296 IDVLVATDIVARGIDIDDIAMVINYDV-----PHDAEDYVHRIGRTARADRDGKAITFVN 350

Query: 692 TITKSIQLAID 702
                    I+
Sbjct: 351 VDDIYYFKQIE 361


>gi|322387454|ref|ZP_08061064.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
           700779]
 gi|321141983|gb|EFX37478.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
           700779]
          Length = 524

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 95/262 (36%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVD-QYYIRVKEQEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++            E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPASAEEAFQAKKQVALKKIERDFANEEIRSNFEKFGKDARQL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            ++    S ++   ++ SL  Q
Sbjct: 409 ASEF---SPEELAMYILSLTVQ 427


>gi|67677953|gb|AAH97566.1| LOC446276 protein [Xenopus laevis]
          Length = 585

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R  +I+  R GK
Sbjct: 409 MRDLVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNVIQSFREGK 468

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     +V   D     F       I  IGR  R  +  K + +  
Sbjct: 469 IWVLICTALLARGIDFKGVNMVINYD-----FPAGAVEYIHRIGRTGRAGHKGKAVSFFT 523

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 524 EDDKPMLRSV 533


>gi|51261421|gb|AAH79986.1| LOC446276 protein [Xenopus laevis]
          Length = 587

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R  +I+  R GK
Sbjct: 409 MRDLVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNVIQSFREGK 468

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     +V   D     F       I  IGR  R  +  K + +  
Sbjct: 469 IWVLICTALLARGIDFKGVNMVINYD-----FPAGAVEYIHRIGRTGRAGHKGKAVSFFT 523

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 524 EDDKPMLRSV 533


>gi|75675849|ref|YP_318270.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
 gi|74420719|gb|ABA04918.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
          Length = 483

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 61/197 (30%), Gaps = 32/197 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVEDVYDEINLAAQQG 582
            T+  +AT    E+ +     +             +E+ R A T       +++ + +  
Sbjct: 179 QTLFFTAT-MPNEIRRVTDTFLHNP--------EKIEVSRPATTAATVAQSQVSCSREPH 229

Query: 583 LR----------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            +                 ++    KR    + + L +       +H ++    R   + 
Sbjct: 230 EKRELLRRLLREAKELKNAIIFCNRKRDVAIVCKSLQKHGFSAGALHGDMDQSARTASLD 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK- 685
             R G+  +LV  ++   GLDIPE   V   D             +  IGR  R   +  
Sbjct: 290 QFRKGELPLLVASDVAARGLDIPEVSHVLNFDV-----PYHPDDYVHRIGRTGRAGRTGT 344

Query: 686 VILYADTITKSIQLAID 702
            I            AI+
Sbjct: 345 AITIVCPADFKSLAAIE 361


>gi|66805957|ref|XP_636700.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4]
 gi|74896924|sp|Q54IV3|DDX42_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx42; AltName:
           Full=DEAD box protein 42
 gi|60465098|gb|EAL63199.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4]
          Length = 986

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 88/218 (40%), Gaps = 27/218 (12%)

Query: 496 TLAEYGF---RLPSCMDNRPLRFEEWNCLRPTTIVVSAT--PGSWELEQCQ-----GIIV 545
            + ++GF    L      RP R          T++ SAT  P   E  +        I +
Sbjct: 463 KMFDFGFGPQVLSIVNHVRPDR---------QTLLFSATFKPNVEEFARTILSDPIKISI 513

Query: 546 EQIIRPTGLVDPPVEI-RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
             I      +   V++ +S   +   + +++ L   QG  +L+ V TK   E L+  L +
Sbjct: 514 GMIGSANSDITQIVQVLKSDSDKWNWLTNQLALLLSQG-SVLIFVSTKVAVEQLSSNLTK 572

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
              +   +H +   +ER + I+  + GK ++L+  ++   GLDIP    V   D  ++  
Sbjct: 573 FGFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDVAARGLDIPLIKNVVNYDTSRDIE 632

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
             +       IGR  R  N+ V  Y     K I  ++D
Sbjct: 633 SHT-----HRIGRTGRAGNTGVA-YTLITPKDIHFSVD 664


>gi|311696498|gb|ADP99371.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 440

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 72/207 (34%), Gaps = 12/207 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQG-----IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           +   ++ SAT  +      +G     + VE   R T   +    +       +       
Sbjct: 177 KRQNLLFSATFSNEIRTLAEGLLDNPVQVEVAARNTSAENIKQSVYPVDQSQKTALLSKL 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +      ++L+   TK  A  LT+ L +  I    +H       R   + D + G+  VL
Sbjct: 237 VRDNSWDQVLVFTRTKHGANRLTQKLEKDGITAAAIHGNKSQGARTRALADFKAGEVRVL 296

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLDI +   V   +             I   GRA  + ++  ++ AD     
Sbjct: 297 VATDIAARGLDIKQLPQVVNFELP--NVPEDYVHRIGRTGRAGESGHALSLVSAD--EGK 352

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQ 723
           +   I+   R  +KQL   +     P 
Sbjct: 353 MLAGIE---RLIKKQLPRTEVEGFEPT 376


>gi|262275236|ref|ZP_06053046.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
 gi|262220481|gb|EEY71796.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
          Length = 410

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 11/188 (5%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVEDVYDEI 575
               T+  SAT     ++    ++   +       +   E     +     + +      
Sbjct: 176 KTRQTLFFSATYPKQVVDLAYRLLSNPVRIEVSTANSTAETVNQLVHPVDKKRKRELLSY 235

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            + ++   ++L+   T++  E L   L    ++   +H E     R  ++   + G+  V
Sbjct: 236 LIGSRNLQQVLVFAKTRQSTEALANELKLDGLKAEAIHGEKTQGARNRVLEGFKSGEVRV 295

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLDIP    V   +             I  IGR  R       I       
Sbjct: 296 LVATDVAARGLDIPSLDTVFNYE-----LPHQPEDYIHRIGRTGRAGKPGMAISLVSREE 350

Query: 695 KSIQLAID 702
           + +  AI+
Sbjct: 351 EGMLTAIE 358


>gi|242047398|ref|XP_002461445.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
 gi|241924822|gb|EER97966.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
          Length = 602

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 18/190 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII----------RPTGLVDPPVEIRSARTQVEDVYD 573
            +++ SAT  SW  +     + + +I           P G+    +   +   Q   +  
Sbjct: 264 QSMLFSATMPSWIRKISNKYLNDPVIIDLVGDSDQKLPEGISLYSIASDNFGKQ--SILG 321

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +      G + ++   TKR A+ L  Y+  R+   + +H ++   +R   +   R G+F
Sbjct: 322 PLIKEHANGGKCIVFTQTKRDADRLA-YVMGRSYPCQALHGDISQNQRERTLSGFRDGRF 380

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           ++LV  ++   GLDIP   LV            +    +   GR AR       +   T 
Sbjct: 381 NILVATDVAARGLDIPNVDLVV-----HYEIPNTSELFVHRSGRTARAGKKGSAILIYTY 435

Query: 694 TKSIQLAIDE 703
            ++  + + E
Sbjct: 436 EQTRAVRVIE 445


>gi|145357256|ref|XP_001422836.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583080|gb|ABP01195.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 710

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 98/243 (40%), Gaps = 39/243 (16%)

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           P  LV+  ++++  ++  ++ +    ++       ++   TK+ A  L   +   +I+  
Sbjct: 363 PKRLVEEVLKLKPNQSAQKEAFLMAIVSRSYDKSTIIFSQTKQEAHRLKIIMGLSDIKAG 422

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H ++   +R+  + + R G    L+  ++   GLDIP    V   DA K     +  S
Sbjct: 423 ELHGDMTQTQRLAALDEFRTGTVTHLIATDVAARGLDIPSVDAVISFDAPK-----TLAS 477

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH---NKKHNINPQSVK- 726
            +  +GR AR       L            ++E+ R+  K +     N K  I P ++  
Sbjct: 478 YLHRVGRTARAGKKGTALTF----------MEESDRKLVKTIAKRGANLKARIVPGNIVA 527

Query: 727 ---EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
              +KI ++ + I+  +                +++ +  L+    + + A++ L  E A
Sbjct: 528 EWHKKIEDMEEQIVQINY---------------EERTERQLQKAEMEANKASNIL--EHA 570

Query: 784 ARI 786
           A I
Sbjct: 571 AEI 573


>gi|126739425|ref|ZP_01755118.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6]
 gi|126719525|gb|EBA16234.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6]
          Length = 468

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 9/188 (4%)

Query: 524 TTIVVSAT-PGSW-ELEQCQGIIVEQI-IRPTGLVDPPVE--IRSARTQVEDVYDEINLA 578
            T++ SAT P    E+         +I + P G     V   +       +    +  LA
Sbjct: 207 QTMLFSATMPKQMNEIANSYLKRPVRIEVTPPGKPAAKVTQSVHFIAKAEKLSLLKELLA 266

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             +  R L+   TK   E L   L +       +H      +R   +   + G+  VLV 
Sbjct: 267 NHKDERTLVFGRTKYGMEKLMRVLEKAGFAAAAIHGNKSQGQRERALAAFKSGEIKVLVA 326

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT--KS 696
            ++   GLDIP+   V   +        +    I    RA ++  +      D +   K+
Sbjct: 327 TDVAARGLDIPDVKFVYNYELP--NVPDAYVHRIGRTARAGKDGEAVAFCAPDEMEELKA 384

Query: 697 IQLAIDET 704
           IQ  +  T
Sbjct: 385 IQKVMKIT 392


>gi|256831947|ref|YP_003160674.1| DEAD/DEAH box helicase domain-containing protein [Jonesia
           denitrificans DSM 20603]
 gi|256685478|gb|ACV08371.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
           20603]
          Length = 544

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 65/181 (35%), Gaps = 16/181 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--------DVY 572
               ++ SAT PG+      + +     IR     D    +++    V         ++ 
Sbjct: 206 VRQMMLFSATMPGAVVAMARRYMNQPTHIRAQDPEDLGSTVKNITQVVYRAHPLDKVEMI 265

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +GL + +   TKR A  + + L ER      +H ++    R + +R  R GK
Sbjct: 266 ARILQARGRGLSV-IFTRTKRNAAKVADELTERGFAAGALHGDLGQGAREQALRAFRNGK 324

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            DVLV  ++   G+D+     V                 +   GR  R  N    + + D
Sbjct: 325 VDVLVATDVAARGIDVENVTHVINYQV-----PEDDKVYLHRTGRTGRAGNKGTAVTFVD 379

Query: 692 T 692
            
Sbjct: 380 W 380


>gi|239946654|ref|ZP_04698407.1| ATP-dependent RNA helicase RhlE [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920930|gb|EER20954.1| ATP-dependent RNA helicase RhlE [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 410

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 10/193 (5%)

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDVYDE 574
            ++   +   ++ SAT     +   Q  +   +    G  +    EI+     + D    
Sbjct: 164 NKFLPEKRQVLMFSATMPKHIIALSQKYLNNPVRITVGATNKAAAEIKQESLHISDKEKF 223

Query: 575 INLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             L  Q G R   +++ V TKR A+ L + L   N +   +H ++   +R  +I   R  
Sbjct: 224 SELTKQLGNREGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQHQRERVILSFRKS 283

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
              ++V  ++   GLDIP    V   D             +  IGR  R   +   L   
Sbjct: 284 NHRIMVATDVAARGLDIPHTQHVINYD-----LPMCPEDYLHRIGRTGRAGATGYALSFI 338

Query: 692 TITKSIQ-LAIDE 703
           +    I+  AID 
Sbjct: 339 SPDDVIRWRAIDR 351


>gi|255089334|ref|XP_002506589.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
 gi|226521861|gb|ACO67847.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
          Length = 576

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 18/186 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE---------DVYDE 574
            T+  +AT     +     I+   I    G  D  V  +     VE          + + 
Sbjct: 307 QTLFFTATWPRAVVRVATAILTNPIQVNIGDTDTLVANKDITQVVEVCGGFQKQQRLMEV 366

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +     Q L+ ++   TK+M + +   +         +H + +  ER  I+   R G+  
Sbjct: 367 LRNPPTQPLKAIVFCGTKKMCDQIGRSMGGMG---AVIHGDKEQRERDWILNQFRSGRVP 423

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTI 693
           VLV  ++   GLDI E  +V   D     F       +  IGR  R  N      + +  
Sbjct: 424 VLVATDVAARGLDIKEVNMVVNFD-----FPNQIEDYVHRIGRTGRAGNKGWAHSFIEPG 478

Query: 694 TKSIQL 699
             ++  
Sbjct: 479 EGNMAR 484


>gi|168037666|ref|XP_001771324.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677413|gb|EDQ63884.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 77/200 (38%), Gaps = 18/200 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L       V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPQKLQVGVFSATMPPEALEITRKFMNKPVKILVKRDELTLEGIKQFYVNVDRE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ + T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLDTLCDLYETLAIT--QSVIFINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +       +   I  
Sbjct: 377 GVAINFVTRDDDRMLQDIQR 396


>gi|1183961|emb|CAA93395.1| RNA elicase [Saccharomyces cerevisiae]
          Length = 547

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 81/212 (38%), Gaps = 26/212 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E++Q     +   I+          +  +   VE+ S   + + +   
Sbjct: 293 QTLMWSAT-WPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKY 351

Query: 575 INLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +  A+Q    + L+   TKRM +D+T+YL E       +H +    ER  ++++ R G+ 
Sbjct: 352 LETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRS 411

Query: 634 DVLVGINLLREGL-DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            ++V  ++   G+ ++     V   D        +    +  IGR  R   +   I +  
Sbjct: 412 PIMVATDVAARGIGNVKGINYVINYD-----MPGNIEDYVHRIGRTGRAGATGTAISFFT 466

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
              K +          +   +      NI P+
Sbjct: 467 EQNKGLGA--------KLISIMREANQNIPPE 490


>gi|326505420|dbj|BAJ95381.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326522769|dbj|BAJ88430.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 524

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 90/272 (33%), Gaps = 35/272 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYR--GDFHRKATLAEYGFRLPSCMDNRPLR 514
            P  + + + +  +  ++E  + I   +              L  Y   LP+       +
Sbjct: 275 TPGRILD-LTKKGICMLNECSMLIMDEADKLLAPEFQPSVEQLIRY---LPASR-----Q 325

Query: 515 FEEWNCLRPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
              ++   P T+        P  + +     + ++ I +    V+   ++          
Sbjct: 326 LLLFSATFPVTVKDFKQKYLPRPYVINLMDELTLKGITQYYAFVEERQKVH--------C 377

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            + +    Q    I +   +    E L + + E      Y+H+++    R  +  D R G
Sbjct: 378 LNTLFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG 436

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
               LV  +L   G+DI    +V   D     F ++  + +  +GR+ R  +  + +   
Sbjct: 437 ACRNLVCTDLFTRGIDIQAVNVVINFD-----FPKTAETYLHRVGRSGRFGHLGLAVNLI 491

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           T         D     R +Q    +   I PQ
Sbjct: 492 TYE-------DRFNMYRIEQELGTEIKTIPPQ 516


>gi|239990555|ref|ZP_04711219.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           11379]
          Length = 519

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 83/233 (35%), Gaps = 28/233 (12%)

Query: 492 HRKATLAE-YGFRLPSCMDNRPLRFEEWNCLR-------PTTIVVSAT-PGSWELEQCQG 542
            RK  L+   G  L    +   L F                T++ SAT PG+      + 
Sbjct: 87  QRKLDLSHIRGLVLDEADEMLDLGFLPDVERIITMLPAKRQTMLFSATMPGAVISLARRY 146

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE--------INLAAQQGLRILLTVLTKRM 594
           +     I  T   D    +++    V   ++         I  A  +GL  ++   TKR 
Sbjct: 147 MSQPTHINATSPDDEGTTVKNTVQHVYRAHNMDKPEMLARILQADGRGL-AMIFCRTKRT 205

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A D+ E L +R      +H ++    R + +R  R GK DVLV  ++   G+D+     V
Sbjct: 206 AADIAEQLEKRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHV 265

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS----IQLAID 702
               +        + + +  IGR  R     V I   D         I  A+D
Sbjct: 266 VNYQS-----PEDEKTYLHRIGRTGRAGAKGVAITLVDWDDIPRWQLINKALD 313


>gi|167036018|ref|YP_001671249.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166862506|gb|ABZ00914.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 626

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 69/193 (35%), Gaps = 11/193 (5%)

Query: 522 RPTTIVVSATPGSW--ELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +   ++ SAT      +L        E+I + P       +E R  R         +   
Sbjct: 184 KRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHL 243

Query: 579 AQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             QG   ++L+   TK  A  L EYL +  +    +H       R + + D +     VL
Sbjct: 244 ITQGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANSVRVL 303

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI +   V   +         +   +  IGR  R   S   I       +
Sbjct: 304 VATDIAARGLDIDQLPHVVNFE-----LPNVEEDYVHRIGRTGRAGRSGEAISMVAPDEE 358

Query: 696 SIQLAIDETTRRR 708
            +  +I+  T++R
Sbjct: 359 KLLKSIERVTKQR 371


>gi|91762707|ref|ZP_01264672.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718509|gb|EAS85159.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 582

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 10/190 (5%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQV--EDVYD 573
           ++      T++ SAT     +   +  + +     TG    P+ +I+    QV  E+ YD
Sbjct: 170 KFVPKDHQTLLFSATLPQNIVRISERYLNKPQRISTGSTSVPIAKIKQETLQVFKENKYD 229

Query: 574 EI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++ +    +   IL+ V TKR A+ + + L E       +H +++  +R  +I   R G 
Sbjct: 230 QLVDQFIARKGSILVFVKTKRGADKMVKRLKEEGHSADAIHGDLRQSKRDRVITSFRKGL 289

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
             +L+  ++   GLDIP    V   D       +     +  IGR AR       + +  
Sbjct: 290 KRILIATDVAARGLDIPLIQHVINFD-----LPQVPEDYVHRIGRTARAGTEGSALTFLT 344

Query: 692 TITKSIQLAI 701
              +S+   I
Sbjct: 345 PDDRSMWNEI 354


>gi|296116226|ref|ZP_06834844.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977332|gb|EFG84092.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 406

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 71/183 (38%), Gaps = 17/183 (9%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIR--------PTGLVDPPVEIRSARTQVEDVYDE 574
             T++ SAT    E+      ++ + +R        P   +   V     R ++  +   
Sbjct: 213 HQTLLFSAT-MPAEIVDLGRRLLHRPVRVKVDTADAPPPRIRQQVMFIPPRHKLGALVSF 271

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++    +  R+L+   T+R A+DL   L  R +    MH E     R   +RD R  K  
Sbjct: 272 LSTHPSR--RVLIFTETRRQADDLANALG-REMTCGVMHGEHTQARRERTLRDFRDHKLH 328

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VL+  +++  G+D+ +  LV   D       R   + +  IGR AR       L      
Sbjct: 329 VLIATDVMARGIDVEDVMLVVNYD-----IPRQAEAYVHRIGRTARAGRQGSALSLCAPE 383

Query: 695 KSI 697
           + +
Sbjct: 384 ERL 386


>gi|168183134|ref|ZP_02617798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|182673701|gb|EDT85662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
          Length = 524

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 94/256 (36%), Gaps = 32/256 (12%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA---------RTQVEDVYD 573
             T++ SAT     +++     +++ +    ++   + +            + ++E +  
Sbjct: 180 KQTMLFSAT-MPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCR 238

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I+   ++    ++   TKR  ++L E +  +   V  MH ++   +RI  ++  +    
Sbjct: 239 IIDS--EEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATL 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           + LV  ++   G+D+     V   D       +   S +  IGR  R           T 
Sbjct: 297 NFLVATDVAARGIDVENISHVINYD-----IPQDAESYVHRIGRTGRADKEGTAYSLVTP 351

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
            +   +          +Q+E      I    +K+K +  ++ IL +        I ++  
Sbjct: 352 REVSSI----------RQIER-----ITKSKIKKKELPTLEDILEKKYDNLLNDIASKIE 396

Query: 754 SLSKKKGKAHLKSLRK 769
               +K    +K+L +
Sbjct: 397 ENKYEKFMPMVKTLEQ 412


>gi|170094876|ref|XP_001878659.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647113|gb|EDR11358.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 617

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 69/190 (36%), Gaps = 9/190 (4%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQII----RPTGLVDPPVEIRSARTQVEDVY 572
            +   +  T++ SAT      E  +  +++ ++    R        +++     Q   + 
Sbjct: 364 SFFKHQRQTLLFSATMPRKIQEFARESLIKPVLVNVGRAGAANLDVLQVVEYVKQEAKMV 423

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             +    +    +++    K   +D+ EYL  + +    +H      ER   I+  + G 
Sbjct: 424 YLLECLQKTPPPVIIFSENKNEVDDIQEYLLLKGVEAVAIHGSKTQEERQYAIKSFKSGA 483

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            DV+V   +  +GLD  E   V I    KE         +  IGR  R+  + +      
Sbjct: 484 KDVMVASGVASKGLDFSEIQHVIIFSMPKE-----IEDYVHQIGRTGRSGKTGIATTFVN 538

Query: 693 ITKSIQLAID 702
           +    Q  +D
Sbjct: 539 MNTPEQTLLD 548


>gi|332006183|gb|AED93566.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
          Length = 655

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 9/137 (6%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++     +G + ++   TKR A++++  L   +I    +H ++   +R   +   R 
Sbjct: 247 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALS-NSIATEALHGDISQHQRERTLNAFRQ 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           GKF VLV  ++   GLDIP   LV               + +   GR  R         A
Sbjct: 306 GKFTVLVATDVASRGLDIPNVDLVI-----HYELPNDPETFVHRSGRTGRAGKEGS---A 357

Query: 691 DTITKSIQLAIDETTRR 707
             +  S Q     +  R
Sbjct: 358 ILMHTSSQKRTVRSLER 374


>gi|261402374|ref|YP_003246598.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
           M7]
 gi|261369367|gb|ACX72116.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
           M7]
          Length = 404

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 98/285 (34%), Gaps = 53/285 (18%)

Query: 496 TLAEYGFR------LPSCMDNRPLRFEEWNCLRPTTIVVSATP--GSWELEQCQGIIVEQ 547
            +   GF       L +C  NR  R   ++   P  I+  A      +E  + +      
Sbjct: 158 EMLNMGFIDDVEKILNACNKNR--RILLFSATMPVEILNLAKKYMNDYEFVRAK------ 209

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
             R   +    +E+     +  +    I     +    L+   TK+  +DL   L +   
Sbjct: 210 --RNADIEQTFIEVD--ENKRFETLCRIL--RDRNFYGLVFCKTKKDTKDLANMLRDIGF 263

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +   +H ++K  +R +++R  +  +  +L+  +++  G+D+ +   V           ++
Sbjct: 264 KAGAIHGDLKQHQREKVVRLFKQKRIKILIATDVMSRGIDVNDLSHVVNYH-----LPQT 318

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
             + +  IGR  R                   AI    R+     E+ K  +I     + 
Sbjct: 319 PEAYMHRIGRTGRAGKKG-------------KAISIINRK-----EYRKLKHI-----ER 355

Query: 728 KIMEVIDPILLEDAATTNISIDAQQLSLS---KKKGKAHLKSLRK 769
            +   I     ++    NI     +  ++   + K K  +K L K
Sbjct: 356 TMKLKIKKYNTKNYNAKNIKSMKNEKKMNQFKEHKSKNEMKKLEK 400


>gi|225551744|ref|ZP_03772687.1| transcription-repair coupling factor [Borrelia sp. SV1]
 gi|225371539|gb|EEH00966.1| transcription-repair coupling factor [Borrelia sp. SV1]
          Length = 1125

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 96/253 (37%), Gaps = 22/253 (8%)

Query: 173 LLGVTGSGKTFTMAKV--IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L G  G  K F + K+       +  +++     L      + KN       + F   Y 
Sbjct: 32  LTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTL-----DKIKNDLQVITNQIFELNY- 85

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
            + P  Y         K +  NE+I  +         +     +    S +  I    + 
Sbjct: 86  -FSPLVYKG----IGSKSTIFNERIKFL----INFYKKTPGIYITVLKSLLSKIPDKNTL 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            + I +++   ++   ++  +L+   Y++     I G F V G+ I+I+P   E    R+
Sbjct: 137 LKNIYKIEKNTNINTADIEKTLITLGYEKTLRVTIPGEFTVKGEIIDIYP-FGEQNPIRI 195

Query: 351 SMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKE-ELKMRLI 408
           ++  + IEEI +F PLT  K    +   +I      +    T+NT    IK  E K  L 
Sbjct: 196 ALNFDKIEEIRKFNPLTQLKHDNEILEFQILPKKEIIWDDETINTLKTKIKSVEYKKILE 255

Query: 409 E--LEKEGRLLEA 419
           E   +KE +  E 
Sbjct: 256 ELDFKKETKTEEM 268



 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 22/190 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +     I P   V     + S    +  +   I     +
Sbjct: 733 CLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESFSELL--IKHAIESELSR 790

Query: 582 GLRILL-------TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             ++ L           K + E LT Y      R+  +H ++   E   I+ +     + 
Sbjct: 791 DGQVFLVNHNIEELYYLKTLIEKLTPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQ 845

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  G+DIP    + I +A+K G  +    L Q  GR  R        +    +
Sbjct: 846 ILLATTIIENGIDIPNANTIIINNANKFGLAQ----LYQLKGRVGRGSQKAYAYFLYQDS 901

Query: 695 KSI-QLAIDE 703
           + + + +I+ 
Sbjct: 902 EKLNERSIER 911


>gi|143456572|sp|Q0D8N0|RH53_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 53
 gi|218199081|gb|EEC81508.1| hypothetical protein OsI_24871 [Oryza sativa Indica Group]
 gi|222636421|gb|EEE66553.1| hypothetical protein OsJ_23067 [Oryza sativa Japonica Group]
          Length = 602

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             G + ++   TKR A+ L  Y   R+   + +H ++   +R   +   R G+F++LV  
Sbjct: 326 ANGGKCIVFTQTKREADRLA-YAMGRSYACQALHGDISQNQRERTLSGFRDGRFNILVAT 384

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   GLDIP   LV            +    +   GR AR       +   T  ++  +
Sbjct: 385 DVAARGLDIPNVDLVI-----HYELPNTSELFVHRSGRTARAGKKGSAILIYTNDQARAV 439

Query: 700 AIDE 703
            I E
Sbjct: 440 RIIE 443


>gi|145511916|ref|XP_001441880.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409141|emb|CAK74483.1| unnamed protein product [Paramecium tetraurelia]
          Length = 604

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           +IL+   TK+  + L + L    IR   +H + K  ER  ++   R G+   L+  ++  
Sbjct: 396 KILIFCSTKKGCDQLQKTLDREGIRCLALHGDKKQTERDYVMSHFRNGRSTALIATDVAS 455

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLDI +  +V   D  K          +  IGR  R       +      + +++A D 
Sbjct: 456 RGLDIKDIEVVVNYDMPKV-----IEDYVHRIGRTGRAGAIGQSISFFASDEDVRMAKDL 510

Query: 704 TTRRREKQ 711
               RE Q
Sbjct: 511 VEILRESQ 518


>gi|41408619|ref|NP_961455.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41396977|gb|AAS04838.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 566

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 78/211 (36%), Gaps = 30/211 (14%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++ V TK+  E++ E L  R      ++ ++   +R   +  L+ G  D+LV  ++ 
Sbjct: 253 EAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVA 312

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           S +  IGR  R   S   +L+     + +  AI
Sbjct: 313 ARGLDVERISHVLNYD-----IPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAI 367

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761
           ++ TR                Q + E  +  ++ +  +  A    SI A   +      +
Sbjct: 368 EKATR----------------QPLTEAELPTVEDVNAQRVAKFADSITAALGAPGIDLFR 411

Query: 762 AHLKSLRKQ----MHLAADNLNFEEAARIRD 788
             ++   ++    M   A  L    A + RD
Sbjct: 412 KLVQDYEREHDVPMADIAAAL----AVQSRD 438


>gi|150016621|ref|YP_001308875.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903086|gb|ABR33919.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 369

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 70/211 (33%), Gaps = 33/211 (15%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            +   +  SAT  S   +     + + I          V I+     ++ +  +I     
Sbjct: 173 RKKQLLCFSATIDSSVKKLAYRYMKDPI---------EVFIKQDDISLDAIEQDIVETTD 223

Query: 581 QGLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +  R               ++   TKR  ++L   L+ R      +HS++   +R  I++
Sbjct: 224 RKKRDALCKVLDEDNPFMAIIFCRTKRRVDELEAVLHTRKYNCEKLHSDIPQNKRERIMK 283

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R  +   L+  ++   GLDI     +   D        S  S I  IGR  R   S  
Sbjct: 284 SFRNAEIQYLIATDVAARGLDINGITHIYNYD-----IPESVESYIHRIGRTGRAGESGY 338

Query: 687 ILYADTI-----TKSIQLAIDETTRRREKQL 712
                          I+ AI    RRR  ++
Sbjct: 339 TCMFIDPKNIKDVNEIEGAIGFKIRRRNVEI 369


>gi|253698823|ref|YP_003020012.1| DEAD/DEAH box helicase [Geobacter sp. M21]
 gi|251773673|gb|ACT16254.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
          Length = 449

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 7/140 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TK+ A+ L   LY +      +H ++    R + I ++R GK  +LV  ++  
Sbjct: 246 KAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITNMRRGKVRLLVATDVAA 305

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLD+     V   D  K          +  IGR  R   + + +   ++ +     +D 
Sbjct: 306 RGLDVTGISHVINYDLPKF-----AEDYVHRIGRTGRAGATGIAISFCSMNEVAY--LDR 358

Query: 704 TTRRREKQLEHNKKHNINPQ 723
             R   K+L  +      P 
Sbjct: 359 IERFTGKKLPMHVVEGFEPT 378


>gi|190576089|ref|YP_001973934.1| ATP-dependent RNA helicase RhlB [Stenotrophomonas maltophilia
           K279a]
 gi|190014011|emb|CAQ47651.1| putative ATP-dependent RNA helicase [Stenotrophomonas maltophilia
           K279a]
          Length = 574

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 92/301 (30%), Gaps = 36/301 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+              +  +             + + GF      D R L   
Sbjct: 141 TPGRLIDYV----------KQHKVVSLHACEICVLDEADRMFDLGFI----KDIRFLLRR 186

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIR---SARTQVED 570
                   T++ SAT     LE     + E    ++    +    V  R    A  +   
Sbjct: 187 MPERTTRQTLLFSATLSHRVLELAYEHMNEPQKLVVEAETITAARVRQRIYFPADDEKIP 246

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +   ++ G R ++ V TK   E +   L +   RV  +  +V   +R  ++   + 
Sbjct: 247 LLLGLLSRSE-GARTMVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+ ++LV  ++   GL I     V   D             +  IGR AR          
Sbjct: 306 GQLEILVATDVAARGLHIDGIKYVYNYD-----LPFDAEDYVHRIGRTARLGEEG----- 355

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
                +I  A +           +  +  I  + V ++++  +        A      D 
Sbjct: 356 ----DAISFACERYAMGLPDIEAY-IEQKIPSEPVTKELLTPLPRPERPAPAAGEEGEDN 410

Query: 751 Q 751
           +
Sbjct: 411 E 411


>gi|156555544|ref|XP_001603956.1| PREDICTED: similar to vasa-like protein [Nasonia vitripennis]
          Length = 732

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 98/335 (29%), Gaps = 64/335 (19%)

Query: 359 EISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLE 418
            I  F         +V    I       + +         I      RL++L  +G+ + 
Sbjct: 394 TIQIFDEARKFSKDSVLKCHIIYGGTSTSHQMKQIFQGVDILVATPGRLLDLVGKGK-IT 452

Query: 419 AQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHV 478
              +E  +  + + +   G    +E   R+ T + PGE   TL                 
Sbjct: 453 FDAIEFVVLDEADRMLDMGFLPDVEKVLRHDTMKPPGER-QTLM-------------FSA 498

Query: 479 TIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELE 538
           T PQ        F         G    +C D               +          E++
Sbjct: 499 TFPQEIQQLAAKFLNNYVFVTVGIVGSACTD------------IEQSFF--------EVK 538

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
           +       +      L++  +E                        IL+ V  K+ A+ +
Sbjct: 539 KSDKRTKLK-----ELLNEEIEQNMLNG------------------ILVFVSEKKTADFI 575

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
              L E N     +H +    ER E + D + GK  +LV   +   GLDI     V   D
Sbjct: 576 AALLSEDNFPTTSIHGDRLQREREEALYDFKTGKMAILVATAVAARGLDIKNVRHVINYD 635

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADT 692
             KE         I  IGR  R  N  K   + D 
Sbjct: 636 LPKE-----IDEYIHRIGRTGRVGNKGKATSFFDP 665


>gi|254774280|ref|ZP_05215796.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 542

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 78/211 (36%), Gaps = 30/211 (14%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++ V TK+  E++ E L  R      ++ ++   +R   +  L+ G  D+LV  ++ 
Sbjct: 229 EAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVA 288

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           S +  IGR  R   S   +L+     + +  AI
Sbjct: 289 ARGLDVERISHVLNYD-----IPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAI 343

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761
           ++ TR                Q + E  +  ++ +  +  A    SI A   +      +
Sbjct: 344 EKATR----------------QPLTEAELPTVEDVNAQRVAKFADSITAALGAPGIDLFR 387

Query: 762 AHLKSLRKQ----MHLAADNLNFEEAARIRD 788
             ++   ++    M   A  L    A + RD
Sbjct: 388 KLVQDYEREHDVPMADIAAAL----AVQSRD 414


>gi|170760570|ref|YP_001788120.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407559|gb|ACA55970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 524

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 89/253 (35%), Gaps = 26/253 (10%)

Query: 523 PTTIVVSAT-PGSWE---LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
             T++ SAT P + +   L   +  +    I    L    +       + +D  + I   
Sbjct: 180 KQTMLFSATMPAAIKKLALNYMKEDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRI 239

Query: 579 A--QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              ++    ++   TKR  ++L E +  +   V  MH ++   +RI  ++  +    + L
Sbjct: 240 IDSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFL 299

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+D+     V   D       +   S +  IGR  R           T  + 
Sbjct: 300 VATDVAARGIDVENISHVINYD-----IPQDAESYVHRIGRTGRADKEGTAYSLVTPREV 354

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
             +          +Q+E      I    + +K +  ++ IL +        I ++     
Sbjct: 355 SSI----------RQIER-----ITKSKITKKELPTLEDILEKKYDNLLNDITSKIEENK 399

Query: 757 KKKGKAHLKSLRK 769
            +K    +K+L +
Sbjct: 400 YEKFMPMVKTLEQ 412


>gi|168180793|ref|ZP_02615457.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|226950212|ref|YP_002805303.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum A2 str. Kyoto]
 gi|182668220|gb|EDT80199.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|226841562|gb|ACO84228.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 524

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 94/256 (36%), Gaps = 32/256 (12%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA---------RTQVEDVYD 573
             T++ SAT     +++     +++ +    ++   + +            + ++E +  
Sbjct: 180 KQTMLFSAT-MPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCR 238

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I+   ++    ++   TKR  ++L E +  +   V  MH ++   +RI  ++  +    
Sbjct: 239 IIDS--EEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATL 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           + LV  ++   G+D+     V   D       +   S +  IGR  R           T 
Sbjct: 297 NFLVATDVAARGIDVENISHVINYD-----IPQDAESYVHRIGRTGRADKEGTAYSLVTP 351

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
            +   +          +Q+E      I    +K+K +  ++ IL +        I ++  
Sbjct: 352 REVSSI----------RQIER-----ITKSKIKKKELPTLEDILEKKYDNLLNDITSKIE 396

Query: 754 SLSKKKGKAHLKSLRK 769
               +K    +K+L +
Sbjct: 397 ENKYEKFMPMVKTLEQ 412


>gi|153938870|ref|YP_001392080.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str.
           Langeland]
 gi|152934766|gb|ABS40264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. Langeland]
 gi|295320089|gb|ADG00467.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. 230613]
          Length = 524

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 88/253 (34%), Gaps = 26/253 (10%)

Query: 523 PTTIVVSAT-PGSWE---LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
             T++ SAT P   +   L   +  +    I    L    +       + +D  + I   
Sbjct: 180 KQTMLFSATMPAPIKKLALNYMKKDVEHIAIVKKSLTVDKIAQHYFAVKNKDKLEAICRI 239

Query: 579 A--QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              ++    ++   TKR  ++L E +  +   V  MH ++   +RI  ++  +    + L
Sbjct: 240 IDSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFL 299

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+D+     V   D       +   S +  IGR  R           T  + 
Sbjct: 300 VATDVAARGIDVENISHVINYD-----IPQDAESYVHRIGRTGRADKEGTAYSLVTPREV 354

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
             +          +Q+E      I    + +K +  ++ IL +        I ++     
Sbjct: 355 SSI----------RQIER-----ITKSKITKKELPTLEDILEKKYDNLLNDITSKIEENK 399

Query: 757 KKKGKAHLKSLRK 769
            +K    +K+L +
Sbjct: 400 YEKFMPMVKTLEQ 412


>gi|148263018|ref|YP_001229724.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146396518|gb|ABQ25151.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 451

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL--R 514
            P  L +Y+ +           ++  I  +   +  R     + GF      D R +  R
Sbjct: 131 TPGRLIDYLKQKVY--------SLKNIEALVIDEADRMF---DMGFI----ADLRFILRR 175

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGI--IVEQI-IRPTGLVDPPVEIRSARTQVEDV 571
              ++      ++ SAT     +E       + E++ + P  +    VE        ++ 
Sbjct: 176 LPPFDER--QNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVIYHVSRKEK 233

Query: 572 YDEINL--AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           +  +      +   R ++ V TKR AE L + L   +   R +  +V+  +R+ I+ D +
Sbjct: 234 FPLLLGLLRKEGMERTMIFVNTKREAEFLFDRLNVNDFPARVISGDVEQRKRLRILEDFK 293

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVIL 688
            GK  +++  ++   GL I     V   D       +     +  IGR AR     K I 
Sbjct: 294 SGKLPIMIATDVASRGLHIDGVSHVINYD-----LPQDAEDYVHRIGRTARAGAEGKAIS 348

Query: 689 YADTITKSIQLAIDETTRRR 708
            AD         I E  + R
Sbjct: 349 LADEDGALYLEDIHEYIKER 368


>gi|309798558|ref|ZP_07692833.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           infantis SK1302]
 gi|308117794|gb|EFO55195.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           infantis SK1302]
          Length = 525

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 95/262 (36%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVD-QYYIRVKEQEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++            E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPASAEEAFQAKKQVALKKIERDFANEEIRSNFEKFGKDARQL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            ++    S ++   ++ SL  Q
Sbjct: 409 ASEF---SPEELAMYILSLTVQ 427


>gi|225455602|ref|XP_002269873.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 711

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 81/217 (37%), Gaps = 29/217 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE----IR--------SARTQVEDV 571
            T++ SAT   W  E     +   +     + +  ++    +R        SAR+QV   
Sbjct: 306 QTLLFSATLPGWVKEISSRFLKPTLKTADLVGNEKMKASTNVRHIVLPCSSSARSQV--- 362

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             ++      G R ++   TK  A +L   L       R +H +++  +R   +   R G
Sbjct: 363 IPDVIRCYSSGGRTIIFTETKDSASELAGLLP----GARALHGDIQQSQREVTLSGFRSG 418

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           KF  LV  N+   GLDI +  L+   +  ++       + I   GR  R  NS V +   
Sbjct: 419 KFMTLVATNVAARGLDINDVQLIIQCEPPRDV-----EAYIHRSGRTGRAGNSGVAVMLF 473

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
              +S    I+     RE  ++        P  + + 
Sbjct: 474 DPRRSNISKIE-----RESGVKFEHVSAPQPADIAKS 505


>gi|225446899|ref|XP_002284103.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 666

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 8/122 (6%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +G + ++   TKR A+ L  Y   RN R   +H ++   +R   +   R G F+VLV  
Sbjct: 358 AKGGKCIVFTQTKRDADRLA-YAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVAT 416

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSI 697
           ++   GLDIP   L+            S    +   GR  R       +++YA+   +++
Sbjct: 417 DVAARGLDIPNVDLII-----HYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTV 471

Query: 698 QL 699
           + 
Sbjct: 472 RF 473


>gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
 gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
          Length = 534

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 15/141 (10%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V TK  A++L   L         +H ++    R   ++  R G+ D+L+  ++   
Sbjct: 253 AIIFVRTKSGADELAHKLQSLGYAAEAIHGDLSQAMRDRAMQRFRAGQVDLLIATDVAAR 312

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLDIP    V   D           S +  IGR  R   +     A T+ +  +  +  T
Sbjct: 313 GLDIPAVSHVINFD-----IPSDPESYVHRIGRTGRAGATGT---AITLIEPRERWLLRT 364

Query: 705 TRRREKQLEHNKKHNINPQSV 725
             R   Q        + P+ +
Sbjct: 365 IERAIGQ-------RLIPKRI 378


>gi|183600257|ref|ZP_02961750.1| hypothetical protein PROSTU_03809 [Providencia stuartii ATCC 25827]
 gi|188020045|gb|EDU58085.1| hypothetical protein PROSTU_03809 [Providencia stuartii ATCC 25827]
          Length = 428

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 62/366 (16%), Positives = 120/366 (32%), Gaps = 50/366 (13%)

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE---ELKMRLIELEKEGRLLEAQRLE 423
           TG+ +  + +   Y  +H       +N     I     EL +++        L E   L+
Sbjct: 57  TGKTLAFLTSTFHYLLTHPSIEGKKVNQPRALIMAPTRELAVQI--YSDAKELAEYTGLK 114

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQI 483
             + Y  +  +     + ++N    L G         L +Y          + H+ +  +
Sbjct: 115 MGLAYGGDGYDE--QLKVLQNGVDILIGTTGR-----LIDY--------AKQGHIDLNAV 159

Query: 484 SGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
             +   +  R   L   GF         R+P+  +   L F         T+       +
Sbjct: 160 QVVVLDEADRMYDL---GFIKDIRWLFRRMPAVTERLNLLFSA-------TLSYRVRELA 209

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG--LRILLTVLTK 592
           +E       I  + ++ TG          +    E+    +    ++    R ++   TK
Sbjct: 210 FEQMNSPEYIEVEPLQKTGHRIKEELFYPSN---EEKMRLLQTLLEEEWPERCIIFANTK 266

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
              +++  +L     RV  +  +V   +R+ I+ +   G  D+LV  ++   GL IP   
Sbjct: 267 HRCDEIWAHLAADGHRVGLLTGDVAQKKRLRILEEFTQGNLDILVATDVAARGLHIPSVT 326

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRREKQ 711
            V   D             +  IGR  R   S   I  A         AI+E  +     
Sbjct: 327 HVFNYD-----LPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNLPAIEEYIQHSIPV 381

Query: 712 LEHNKK 717
            ++N +
Sbjct: 382 SKYNSE 387


>gi|115700917|ref|XP_001192557.1| PREDICTED: similar to RNA helicase p47 [Strongylocentrotus
           purpuratus]
 gi|115749264|ref|XP_788694.2| PREDICTED: similar to RNA helicase p47 [Strongylocentrotus
           purpuratus]
          Length = 538

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 68/187 (36%), Gaps = 27/187 (14%)

Query: 524 TTIVVSAT-PG------------SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT P             ++E+   Q + ++ I +    V+   ++         
Sbjct: 324 QIMLYSATFPITVKNFMDRYLTKAYEINLMQELTLKGITQYYAFVEEKQKVH-------- 375

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q     ++   T +  E L + + E      Y+HS ++   R  +  D R 
Sbjct: 376 CLNTLFSKLQINQ-AIIFCNTTQRVELLAKKITELGYSCYYIHSRMQQEHRNRVFHDFRN 434

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F R   + +  IGR+ R  +  + +  
Sbjct: 435 GACRNLVCTDLFTRGIDIQSVNVVINFD-----FPRVSETYLHRIGRSGRYGHMGLAINM 489

Query: 691 DTITKSI 697
            T    +
Sbjct: 490 ITHDDRV 496


>gi|50305963|ref|XP_452942.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660551|sp|Q6CSZ7|DHH1_KLULA RecName: Full=ATP-dependent RNA helicase DHH1
 gi|49642075|emb|CAH01793.1| KLLA0C16599p [Kluyveromyces lactis]
          Length = 514

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 13/147 (8%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++   +    E L + + E      Y H+ +K  ER ++  + R GK   LV  +LL
Sbjct: 274 NQAIIFCNSTNRVELLAKKITELGFSCYYSHARMKQSERNKVFHEFRQGKVRTLVCSDLL 333

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
             G+DI    +V   D     F ++  + +  IGR+ R  +  + +          L   
Sbjct: 334 TRGIDIQAVNVVINFD-----FPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNL--- 385

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKI 729
                 + + E N +    P  + + +
Sbjct: 386 -----YKIEQELNTEIAPIPSQIDKSL 407


>gi|15218574|ref|NP_177417.1| eukaryotic translation initiation factor 4A, putative / eIF-4A,
           putative [Arabidopsis thaliana]
 gi|75333652|sp|Q9CAI7|IF4A3_ARATH RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 23
 gi|12323781|gb|AAG51861.1|AC010926_24 putative Eukaryotic initiation factor 4A; 30924-32477 [Arabidopsis
           thaliana]
 gi|16974629|gb|AAL31217.1| At1g72730/F28P22_8 [Arabidopsis thaliana]
 gi|21593752|gb|AAM65719.1| putative Eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|22655476|gb|AAM98330.1| At1g72730/F28P22_8 [Arabidopsis thaliana]
 gi|332197244|gb|AEE35365.1| translation initiation factor 4A-3 [Arabidopsis thaliana]
          Length = 414

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 80/200 (40%), Gaps = 18/200 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 205 YDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 264

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 265 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 322

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 323 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 377

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +  +  + +   I  
Sbjct: 378 GVAINFMTSEDERMMADIQR 397


>gi|58038579|ref|YP_190543.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58000993|gb|AAW59887.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 793

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 62/187 (33%), Gaps = 15/187 (8%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE----IRSARTQVEDVYDEIN 576
            T+  SAT            +   VE  +     V   +E    I     +   +   + 
Sbjct: 469 QTLFFSATMAPEIRRLADAFLRHPVEITVSRQSSVATTIEEALVIVPEDEKRRTLKKLL- 527

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +     ++    KR  + + +YL + +I   ++H ++    R   +   R G+   L
Sbjct: 528 -RRENVQSAIVFCNRKRDVDMIQQYLTKHDIEAGHLHGDLAQSLRFSTLERFRSGELKFL 586

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITK 695
           V  ++   G+DI     V   D        +    +  IGR  R  N       A    +
Sbjct: 587 VCSDVAARGIDIGGLSHVFNYD-----LPFNAEDYVHRIGRTGRAGNEGHAFSLATPRDR 641

Query: 696 SIQLAID 702
            +  AI+
Sbjct: 642 RLLEAIE 648


>gi|253575100|ref|ZP_04852439.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845556|gb|EES73565.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 410

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 68/194 (35%), Gaps = 29/194 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT     +      + + I+R        VEI    + V+ +   +    +   
Sbjct: 182 QTLLFSAT-----MPDAIAQMADSILRNPV----KVEITPVSSTVDTIGQYLYYVDKGNK 232

Query: 584 R--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           R               ++   TK  A+ L  +L +  +  + +H +     R   ++D +
Sbjct: 233 RDLLIHLLKDPSIESAIVFTRTKHGADRLVRHLTKAQVSAKAIHGDKSQGARQTALQDFK 292

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
                VLV  ++   G+DI E   V   +           + +  IGR  R   S V I 
Sbjct: 293 NRTLRVLVATDIAARGIDIDELSHVINYE-----LPNIPETYVHRIGRTGRAGQSGVAIS 347

Query: 689 YADTITKSIQLAID 702
           + D   K     I+
Sbjct: 348 FCDFDEKPYLADIE 361


>gi|238650986|ref|YP_002916842.1| ATP-dependent RNA helicase RhlE [Rickettsia peacockii str. Rustic]
 gi|238625084|gb|ACR47790.1| ATP-dependent RNA helicase RhlE [Rickettsia peacockii str. Rustic]
          Length = 410

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 75/214 (35%), Gaps = 10/214 (4%)

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L E    L   M  +     ++   +   ++ SAT     +   Q  +   +    G 
Sbjct: 143 TVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSATMPKHIIAVSQKYLNNPVRITVGA 202

Query: 555 VDPPV-EIRSARTQVEDVYDEINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVR 610
            +    EI+     V D      L  Q G R   +++ V TKR A+ L + L   N    
Sbjct: 203 TNKAAAEIKQESMHVSDKEKFSALTKQLGNREGSVIIFVKTKRSADQLAKMLKYENHTAE 262

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H ++   +R  +I   R     ++V  ++   GLDIP    V   D            
Sbjct: 263 AIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYD-----LPMCPED 317

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
            +  IGR  R   +   L   +    I+  AID 
Sbjct: 318 YLHRIGRTGRAGATGHALSFISPDDVIRWRAIDR 351


>gi|254567599|ref|XP_002490910.1| Putative ATP-dependent RNA helicase of the DEAD-box family involved
           in ribosomal biogenesis [Pichia pastoris GS115]
 gi|238030707|emb|CAY68630.1| Putative ATP-dependent RNA helicase of the DEAD-box family involved
           in ribosomal biogenesis [Pichia pastoris GS115]
 gi|328352552|emb|CCA38951.1| hypothetical protein PP7435_Chr2-1277 [Pichia pastoris CBS 7435]
          Length = 498

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 74/182 (40%), Gaps = 16/182 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT----------GLVDPPVEIRSARTQVEDVYD 573
            T++ +AT    E+ +     ++  ++ T            +   VE+     + + +  
Sbjct: 267 QTLMFTAT-WPKEVRELASHFMKSPVKVTVGDRDELSANKKITQIVEVIDPYDKEKKLLQ 325

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            ++  ++   +IL+  L K+ A  +   L  +  +V  +H ++   +R + + D + GK 
Sbjct: 326 LLSKYSKNDDKILIFALYKKEATRVERTLNYKGYKVSAIHGDLSQQQRTQSLNDFKTGKS 385

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +L+  ++   GLDIP   +V  L      F  +    +  IGR  R   + +     T 
Sbjct: 386 SLLLATDVAARGLDIPNVKVVINL-----TFPLTVEDYVHRIGRTGRAGKTGIAHTLFTE 440

Query: 694 TK 695
            +
Sbjct: 441 HE 442


>gi|224139612|ref|XP_002323192.1| predicted protein [Populus trichocarpa]
 gi|222867822|gb|EEF04953.1| predicted protein [Populus trichocarpa]
          Length = 551

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +G + ++   TKR A+ L  Y   +  +   +H ++    R   +   R G F++LV  
Sbjct: 285 AKGGKCIVFTETKRDADRLA-YAMAKTYKCEALHGDISQSVRERTLSGFREGHFNILVAT 343

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   GLD+P   L+           R   + +   GR  R       +   T  +S Q+
Sbjct: 344 DVAARGLDVPNVDLII-----HYALPRCSETFVHRSGRTGRAGKKGTAILIYTQDESRQV 398

Query: 700 AIDE 703
            I E
Sbjct: 399 RIIE 402


>gi|254456111|ref|ZP_05069540.1| ATP-dependent RNA helicase RhlE [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083113|gb|EDZ60539.1| ATP-dependent RNA helicase RhlE [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 536

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 77/191 (40%), Gaps = 10/191 (5%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQV---EDVY 572
           ++      T++ SAT     L   +  + +     TG    P+ +I+    QV       
Sbjct: 170 KFVPKDHQTLLFSATLPQNILRISERYLHKPERISTGATSVPIAKIKQETLQVFKENKYD 229

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           + I+    +   IL+ V TKR A+ + + L E       +H +++  +R  +I   R G 
Sbjct: 230 ELIDQFLARKGSILVFVKTKRSADKMVKRLKEEGHSADGIHGDLRQSKRDRVINSFRKGL 289

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
             +L+  ++   GLDIP    V   D       +     +  IGR AR  +    + +  
Sbjct: 290 KRILIATDVAARGLDIPLIQHVINYD-----LPQVPEDYVHRIGRTARAGSEGSALTFLT 344

Query: 692 TITKSIQLAID 702
              +S+  +I+
Sbjct: 345 PDDRSMWNSIN 355


>gi|156844185|ref|XP_001645156.1| hypothetical protein Kpol_1062p5 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380632|sp|A7TK63|DBP8_VANPO RecName: Full=ATP-dependent RNA helicase DBP8
 gi|156115814|gb|EDO17298.1| hypothetical protein Kpol_1062p5 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 431

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 100/273 (36%), Gaps = 24/273 (8%)

Query: 504 LPSCMDNRPLRF-----EEWNCLRPTTIVVSATPG-SWELEQCQGIIVEQIIRPTGLVDP 557
           LP     + L F     ++   L+      S  P  ++E+E    + V   ++       
Sbjct: 176 LPPKQKRQTLLFTATITDQVRALQNAPAQDSKPPLFAYEVENVDNVAVPSTLK------L 229

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
              +     +   +Y  +     +   +++ V     AE L   L    +RV  +HS++ 
Sbjct: 230 EYLLVPEHVKEAYLYQLLTCEDYKDSSVIVFVNRTTAAEVLRRTLRSLEVRVASLHSQMP 289

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ERI  ++  R     VL+  ++   GLDIP   LV   D       +   + I   GR
Sbjct: 290 QSERINSLQRFRANAARVLIATDVAARGLDIPTVELVINYD-----IPQDPDTFIHRSGR 344

Query: 678 AARNVNSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
            AR   S   I +      S   AI+E   R  K+++  KK +     +++ + +V    
Sbjct: 345 TARAGRSGDAISFVTPRDVSRIEAIEE---RINKKMDECKKVHDT-AVIRKALTKVTKAK 400

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRK 769
                     +   ++ +  KK      KSLR 
Sbjct: 401 RESLMDMEKANFGEKRKTQKKKNLAE--KSLRA 431


>gi|319897620|ref|YP_004135817.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
 gi|317433126|emb|CBY81500.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
          Length = 415

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 90/252 (35%), Gaps = 34/252 (13%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +DE  V +         +  R   L   GF        R +R+    C 
Sbjct: 145 IDYV-KQGVIALDEIQVVV-------LDEADRMFDL---GFI-------RDIRYLLRKCP 186

Query: 522 RPT---TIVVSATPGSWELEQCQGIIVE------QIIRPTGLVDPPVEIRSARTQVEDVY 572
            P    T++ SAT      E     + +      +  + TG      E+     Q +   
Sbjct: 187 APQARLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKE-ELFYPSNQDKMAL 245

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               +  +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G 
Sbjct: 246 LLTLMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGD 305

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
            D+LV  ++   GL I +   V   D         +   +  IGR  R   S V I +A 
Sbjct: 306 LDILVATDVAARGLHISDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFAC 360

Query: 692 TITKSIQLAIDE 703
                   AI+E
Sbjct: 361 EEYAMNLPAIEE 372


>gi|302801091|ref|XP_002982302.1| hypothetical protein SELMODRAFT_228839 [Selaginella moellendorffii]
 gi|300149894|gb|EFJ16547.1| hypothetical protein SELMODRAFT_228839 [Selaginella moellendorffii]
          Length = 412

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 78/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    + SAT  P + E+ +       +I+         G+    V +   
Sbjct: 203 YDIFQLLPAKVQVGLFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVERE 262

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++   T+R  + LT+ L  R+  V   H ++    R  I
Sbjct: 263 DWKLDTLCDLYETLAIT--QSVIFCNTRRKVDWLTDKLRSRDHTVSATHGDMDQNTRDII 320

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 321 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 375

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 376 GVAINFLTKDDEKMLFDI 393


>gi|125556618|gb|EAZ02224.1| hypothetical protein OsI_24319 [Oryza sativa Indica Group]
          Length = 620

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 79/212 (37%), Gaps = 17/212 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      D+    F+ +   R  T++ SAT         +  +V+ II   G  
Sbjct: 341 RLVDLGFE-----DDIKEVFDHFKAQR-QTLLFSATMPEKIQNFAKSALVKPIIVNVGRA 394

Query: 555 ----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + +   +   +    +    +L+    K   + + E+L  + +   
Sbjct: 395 GAANLDVIQEVEYVKEE-ARIIYLLECLQKTPPPVLVFCEHKADVDYIQEFLLLKGVEAV 453

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER +  +  +  + DVLV  ++  +GLDIP+   V   D   E       +
Sbjct: 454 AIHGGKDDEERKDAFKSFKASEKDVLVATDVASKGLDIPDIQHVINYDMPAE-----IEN 508

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            +  IGR  R   + V        ++    +D
Sbjct: 509 YVHRIGRTGRRGKTGVATTFINKNQTQTTLLD 540


>gi|186476125|ref|YP_001857595.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184192584|gb|ACC70549.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 556

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 70/198 (35%), Gaps = 25/198 (12%)

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVDPP---VEIRSARTQVEDVYDEINLAAQQGL 583
           +V+ATP S +       +  +I   TG +      +EI+    Q  ++   ++    +  
Sbjct: 227 IVAATPASRQTMLFSATLDGKIGSLTGRLLKEPERIEIKQHIEQRTNIAQTVHYVDDRDH 286

Query: 584 R---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +                ++   TK  A+ L   L +       +H ++    R   IR L
Sbjct: 287 KDRLLDHLLRDSGLDQAIVFTATKSDADMLAGRLADAGFESAALHGDLPQGARNRTIRAL 346

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R  +  VLV  ++   G+DIP    V   D  K          +  IGR  R   S   +
Sbjct: 347 RERRVRVLVATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAV 401

Query: 689 YADTITKSIQLAIDETTR 706
               +  + Q A+    R
Sbjct: 402 SL--VHHAEQGALKRIER 417


>gi|70929228|ref|XP_736707.1| helicase [Plasmodium chabaudi chabaudi]
 gi|56511470|emb|CAH85853.1| helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 158

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 5/116 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++  RI++ V TKR A+ +T+ L    +    +H + K  ER  ++ D + GK  +L+  
Sbjct: 4   KENDRIIVFVETKRSADFITKALRLEGMPALCIHGDKKQDERRWVLNDFKTGKSPILIAT 63

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           ++   GLDI +   V   D     F       +  IGR  R           T  K
Sbjct: 64  DVASRGLDIKDVKFVINYD-----FPNQIEDYVHRIGRTGRAGAHGASFTFLTSDK 114


>gi|194383346|dbj|BAG64644.1| unnamed protein product [Homo sapiens]
          Length = 407

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 66/187 (35%), Gaps = 12/187 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDV-----YDEI 575
              T++ SAT         +  + E I    G V    E I      VED+       +I
Sbjct: 120 VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDI 179

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A       L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +
Sbjct: 180 LGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 239

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   +   GLDI     V   D             +  IGR  R  N  +        K
Sbjct: 240 LVATAVAARGLDISNVRHVINFD-----LPSDIEEYVHRIGRTGRVGNLGLATSFFN-EK 293

Query: 696 SIQLAID 702
           ++ +  D
Sbjct: 294 NMNITKD 300


>gi|83310527|ref|YP_420791.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82945368|dbj|BAE50232.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 476

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 89/266 (33%), Gaps = 46/266 (17%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         +++  + +  +  +   +  R     + GF  P        +  
Sbjct: 133 TPGRLLD--------LIEQGAIRLDSVEALVLDEADRM---LDMGFIQPIR------KIV 175

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
                +  T++ SAT     +      ++   +R        VE+    + V+ +  ++ 
Sbjct: 176 ALVPKQRQTVLFSAT-MPDSIVGLANSVLHTPVR--------VEVTPVSSTVDKIDQKVL 226

Query: 577 LAAQQGLRIL--------------LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
              ++  R L              +   TK  A  + E L +  I    +H       R 
Sbjct: 227 FVDREHKRTLLTDILAGKDVGRALVFTRTKHGANRVVELLEKAGIDADAIHGNKSQGARQ 286

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           + + D R G+   LV  ++   G+D+     V   +   E       S +  IGR AR  
Sbjct: 287 KALADFRDGRIKALVATDIAARGIDVDGITHVINFELPNE-----PESYVHRIGRTARAG 341

Query: 683 NSKV-ILYADTITKSIQLAIDETTRR 707
            S + +   D    +    I++T R+
Sbjct: 342 ASGIALSLCDGDEVAYLRDIEKTIRQ 367


>gi|120598117|ref|YP_962691.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146293812|ref|YP_001184236.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120558210|gb|ABM24137.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145565502|gb|ABP76437.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 413

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 71/178 (39%), Gaps = 10/178 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDP--PVEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT      E  + ++ E ++I  T        VE R      +   + ++   +
Sbjct: 184 QTLLFSATLDDAIFELSKSLLREPKLIEVTKRNTTAAQVEQRVYAIDSDRKTEFVSHLIR 243

Query: 581 QGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                ++L+   TK+  + L + L + +I     H ++    R ++++  +LG   VLV 
Sbjct: 244 SNYWHQVLIFSRTKQGVDRLVQQLNKLSIVTHAFHGDLSQGAREKVLQAFKLGNIQVLVA 303

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            ++   GLDI E   V   +             I  IGR  R  ++ + +   +   +
Sbjct: 304 TDVAARGLDIVELKYVINFELPFI-----AEDYIHRIGRTGRAGSAGLAITLFSQEDT 356


>gi|46128439|ref|XP_388773.1| hypothetical protein FG08597.1 [Gibberella zeae PH-1]
          Length = 620

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            G+R ++ V +++ A++L ++L+   + V  MHS+    ER   +R  R G   +L+   
Sbjct: 397 HGIRTIIFVNSRQSADNLDDFLFNMKLPVTSMHSDRTQQEREAAMRAFRSGNAPILIATG 456

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKSIQL 699
           +   G+D+     V   D     +          IGR  R  +  V   +     + +  
Sbjct: 457 VTARGIDVQNVMHVINYDLPSIEYG-GIEEYTHRIGRTGRIGHRGVATSFFSERDEPLGS 515

Query: 700 AIDET 704
            +  T
Sbjct: 516 VLTRT 520


>gi|332994521|gb|AEF04576.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
          Length = 588

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 11/190 (5%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD-EINLAAQQ 581
            T + SAT PG  +    + +   + ++    V     IR    QV   +  E      +
Sbjct: 183 QTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQVAPHHKLEALTRIME 242

Query: 582 GLR---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             R   +++ V TK    +L + L  R   V  ++ ++    R   +  L+ G  D+LV 
Sbjct: 243 VERFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQNARERTVDKLKQGNIDILVA 302

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            +++  GLD+     V   D           S +  IGR  R   +   IL+     K +
Sbjct: 303 TDVVARGLDVERVSHVINYDV-----PYDSESYVHRIGRTGRAGRTGDAILFISHREKRM 357

Query: 698 QLAIDETTRR 707
             +I++TT++
Sbjct: 358 LFSIEKTTKQ 367


>gi|296158936|ref|ZP_06841764.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295890811|gb|EFG70601.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 539

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 74/215 (34%), Gaps = 25/215 (11%)

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVD---PPVEIRSARTQVEDVYDEINLAAQQGL 583
           +V+ATP + +       +  +I   TG +      +EI     Q  ++   ++    +  
Sbjct: 242 IVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRLEQRTNIAQTVHYVDDRDH 301

Query: 584 R---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +                ++   TK  A+ L   L +       +H ++    R   IR L
Sbjct: 302 KDRLLDHLLRDEGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTIRAL 361

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R  +  VLV  ++   G+DIP    V   D  K          +  IGR  R   S + +
Sbjct: 362 RERRVRVLVATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGIAV 416

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
               +  + Q A+    R     L  N      P+
Sbjct: 417 SL--VHHAEQGALKRIERFVRAPLAVNVVEGFEPR 449


>gi|254819463|ref|ZP_05224464.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium intracellulare ATCC 13950]
          Length = 567

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 30/211 (14%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++ V TK+  E++ E L  R      ++ ++   +R   +  L+ G  D+LV  ++ 
Sbjct: 253 EAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTVAALKDGSIDILVATDVA 312

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           S +  IGR  R   S   +L+     + +  AI
Sbjct: 313 ARGLDVERISHVLNYD-----IPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAI 367

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761
           ++ TR                Q++ E  +  ++ +  +  A    SI     +      +
Sbjct: 368 EKATR----------------QTLTETALPTVEDVNAQRVAKFADSITTALGAPGIDLFR 411

Query: 762 AHLKSLRKQ----MHLAADNLNFEEAARIRD 788
             ++   ++    M   A  L    A + RD
Sbjct: 412 KLVQDYEREHDTPMADIAAAL----ALQSRD 438


>gi|237796237|ref|YP_002863789.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
 gi|229263626|gb|ACQ54659.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
          Length = 524

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 94/256 (36%), Gaps = 32/256 (12%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA---------RTQVEDVYD 573
             T++ SAT     +++     +++ +    ++   + +            + ++E +  
Sbjct: 180 KQTMLFSAT-MPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCR 238

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I+   ++    ++   TKR  ++L E +  +   V  MH ++   +RI  ++  +    
Sbjct: 239 IIDS--EEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATL 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           + LV  ++   G+D+     V   D       +   S +  IGR  R           T 
Sbjct: 297 NFLVATDVAARGIDVENISHVINYD-----IPQDAESYVHRIGRTGRADKEGTAYSLVTP 351

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
            +   +          +Q+E      I    +K+K +  ++ IL +        I ++  
Sbjct: 352 REVSSI----------RQIER-----ITKSKIKKKELPTLEDILEKKYDNLLNDIASKIE 396

Query: 754 SLSKKKGKAHLKSLRK 769
               +K    +K+L +
Sbjct: 397 ENKYEKFMPMVKTLEQ 412


>gi|156083731|ref|XP_001609349.1| DEAD/DEAH box helicase [Babesia bovis T2Bo]
 gi|154796600|gb|EDO05781.1| DEAD/DEAH box helicase [Babesia bovis]
          Length = 609

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 10/170 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRS---ARTQVEDVYDEINLAA 579
            T++ SAT      +  +  + + +    G V    E IR       Q + ++  + L  
Sbjct: 342 QTVMFSATFPKEIQQLARDFLRDYLYLAVGRVGSTNEFIRQRLLYADQEQKLHYLVKLLR 401

Query: 580 QQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +     +L+ V TKR A+ +  YL + N     +H +    +R E +R  + G+  +LV 
Sbjct: 402 ENTNGLVLIFVETKRRADMIESYLLKENFMAVNIHGDRSQQDREEALRLFKTGERPILVA 461

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            ++   GLDI     V   D        +    +  IGR  R  N  V  
Sbjct: 462 TDVAARGLDINNITHVINCD-----LPANIDDYVHRIGRTGRAGNVGVAT 506


>gi|83593250|ref|YP_427002.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
 gi|83576164|gb|ABC22715.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
          Length = 393

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 16/197 (8%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIR----SARTQVEDVY 572
            +  T++ SAT    E+      ++   +R    P   V   ++ R        + + + 
Sbjct: 180 RKRQTVMFSAT-LPNEVTGLVASLMNDPVRVEVAPAASVANRIDQRVLFVEQTNKRKLLL 238

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +  A +   R ++   TK  A  L  +L E  ++   +H       R   + D + GK
Sbjct: 239 DLLGDARKV-ERAIVFTRTKHGANKLGIFLLEYGVKSDVIHGNKSQGARQRALNDFKSGK 297

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
              LV  ++   G+D+     V   D   E       S +  IGR AR   + + L    
Sbjct: 298 VRALVATDIAARGIDVDGITHVINFDLPNE-----PESYVHRIGRTARAGAAGIALSLCA 352

Query: 693 ITK-SIQLAIDETTRRR 708
             +     AI++  + R
Sbjct: 353 PQEMPYLKAIEKVIKSR 369


>gi|310756762|gb|ADP20522.1| ATP-dependent RNA helicase DDX3X [Heterocephalus glaber]
          Length = 662

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 5/123 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYREGYACTSIHGDRSQRDREEALHQFRSGKS 492

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV   +   GLDI     V   D             +  IGR  R  N  +       
Sbjct: 493 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLGLATSFFND 547

Query: 694 TKS 696
             +
Sbjct: 548 RNA 550


>gi|262273619|ref|ZP_06051433.1| ATP-dependent RNA helicase RhlB [Grimontia hollisae CIP 101886]
 gi|262222597|gb|EEY73908.1| ATP-dependent RNA helicase RhlB [Grimontia hollisae CIP 101886]
          Length = 434

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 86/255 (33%), Gaps = 26/255 (10%)

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS--WELEQC 540
           I  +   +  R   L   GF      D R L            ++ SAT      EL   
Sbjct: 161 IQAVVLDEADRMFDL---GFI----KDIRFLFRRMPEPSERLNMLFSATLSYRVQELAFE 213

Query: 541 QGIIVEQII----RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG--LRILLTVLTKRM 594
                E ++    + TG          +    +D    +    ++    R ++   TK  
Sbjct: 214 HMTNPEHVVVEPEQKTGHRIKEELFYPSN---KDKMRLLQTLIEEEWPERAIVFANTKHR 270

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            ED+  +L    +R   +  +V   +R++I+ +   G  D+LV  ++   GL IP+   V
Sbjct: 271 CEDIWGHLAADGLRAGLLTGDVPQKKRVKILEEFTKGSLDILVATDVAARGLHIPQVTHV 330

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDETTRRREKQLE 713
              D             +  IGR  R   S   I +A         AI+E         E
Sbjct: 331 FNYD-----LPDDCEDYVHRIGRTGRAGASGASISFACEEYAVNLPAIEEYIDHTIPVSE 385

Query: 714 HNKKHNIN--PQSVK 726
           +N+   +   P  +K
Sbjct: 386 YNEDALLTDLPAPIK 400


>gi|251793198|ref|YP_003007926.1| ATP-dependent RNA helicase RhlB [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534593|gb|ACS97839.1| ATP-dependent RNA helicase RhlB [Aggregatibacter aphrophilus
           NJ8700]
          Length = 433

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 120/350 (34%), Gaps = 48/350 (13%)

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTA-MKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           TG+ I  +  +  +  +H          A +     EL +++             ++  +
Sbjct: 71  TGKTIAFLTALFHHLLTHPTETDKNQPRALVLAPTRELAVQIEH---------DAQIFLK 121

Query: 426 ITYDLEMLETTGSC-----QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
            T     L   G       ++IEN    L G         + +Y+ +  ++ +D      
Sbjct: 122 TTQFKTALAYGGDGYDKQLKAIENGVDVLIGTTGR-----VIDYV-KQGIIRLD------ 169

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
            +I  +   +  R   L   GF      D R L  +  +  +  T++ SAT      E  
Sbjct: 170 -RIQVVVLDEADRMFDL---GFI----RDIRYLLRKCPSPQQRLTMLFSATLSYKVRELA 221

Query: 541 QGIIVE------QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
              + +         + TG      E+     Q +       L  +   R ++   TK  
Sbjct: 222 FEDMNDPEYVEIAPEQKTGRQIKE-ELFYPSNQDKIRLLLTLLEEEWPERCIIFANTKHQ 280

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            E++  YL     RV  +  +V   +R+ +++    G+ D+LV  ++   GL I E   V
Sbjct: 281 CEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGELDILVATDVAARGLHIAEVTHV 340

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
              D         +   +  IGR  R   S + I +A         AI+E
Sbjct: 341 FNYD-----LPDDREDYVHRIGRTGRAGESGISISFACEQYAMNLPAIEE 385


>gi|168000743|ref|XP_001753075.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695774|gb|EDQ82116.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 793

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 8/131 (6%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + +++     +G + ++   TKR A+D+   +  R +    +H ++   +R + +   R 
Sbjct: 375 ILNDLIAVYGKGGKTIVFTQTKRDADDVATAMA-RTLGCEALHGDISQSQREKTLNAFRE 433

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VIL 688
           G F VLV  ++   GLDIP   LV               + +   GR  R       +++
Sbjct: 434 GNFSVLVATDVAARGLDIPNVDLVI-----HYEIPNDPETFVHRSGRTGRAGKDGTAILM 488

Query: 689 YADTITKSIQL 699
           Y+D  T++++L
Sbjct: 489 YSDRQTRTMRL 499


>gi|149500123|ref|XP_001514887.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 53,
           partial [Ornithorhynchus anatinus]
          Length = 369

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 14/170 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            TI+ SAT         +  +   +I   G +D          V +     +   +   I
Sbjct: 76  QTIMTSATWPDSVRRLSKSYLKNPMIVYVGTLDLTAVNTVEQKVVVIPEEEKRSFIRFFI 135

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +    +  ++++ V  K  A+DL+  L  + I V+ +H   +  +R + + D + G+  +
Sbjct: 136 DAMKPKD-KVIVFVGRKLTADDLSSDLSLQGIPVQSLHGNREQFDREQALDDFKKGRVRI 194

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           L+  +L   GLD+ +   V   D     F R+    +  IGR  R   + 
Sbjct: 195 LIATDLASRGLDVHDVTHVFNFD-----FPRNIEEYVHRIGRTGRAGRTG 239


>gi|116333167|ref|YP_794694.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
 gi|116098514|gb|ABJ63663.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
          Length = 523

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 103/275 (37%), Gaps = 40/275 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVE---IRSARTQVEDVYDEIN 576
            T++ SAT    E+++     ++      I+   L    ++   +RS   +  DV     
Sbjct: 176 QTMLFSAT-MPPEIKRVGVQFMKDPKHVKIKAKELTTDLIDQFYVRSRDFEKFDVMTRFF 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                 L  ++   TKR  +++   L  R      +H ++    R +I+ D R GK D+L
Sbjct: 235 DVQSPDL-TIVFTRTKRRVDEIASGLEARGYNAAGIHGDLTQKRRTQIMNDFRHGKLDIL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DI +   V   D       +   S +  +GR  R     V +   T    
Sbjct: 294 VATDVAARGIDINDVTHVYNYD-----IPQDPDSYVHRVGRTGRAGKHGVSMTFVTPN-- 346

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS-- 754
                 E    RE             + + +  M  + P   E+A  + +    + ++  
Sbjct: 347 ------EMDYLREI------------EKLTKVRMLPLKPPSDEEAFVSQLGAAKETIADL 388

Query: 755 LSKKKGKAHLKSLRKQMHLA-ADNLNFEEAARIRD 788
           ++K   + + K+    ++   A++L    AA + D
Sbjct: 389 VNKADKEKYAKAAESLLNEYDAEDL---VAALLSD 420


>gi|259047319|ref|ZP_05737720.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
 gi|259036015|gb|EEW37270.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
          Length = 520

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 11/188 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TKR  ++L   L  R  R   +H ++   +R+ ++RD +    D+LV  ++   
Sbjct: 253 TIVFGRTKRRVDELARGLEMRGYRAEGIHGDLSQQKRMSVLRDFKNNHLDILVATDVAAR 312

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLDI     V   D       +   S +  IGR  R       + +           I+E
Sbjct: 313 GLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGQEGMSVTFVTPNEMDYLRVIEE 367

Query: 704 TTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLE--DAATTNISIDAQQLSLSKK 758
            TR+R   L      +      ++  E I E++  +       A + +  + +   L+  
Sbjct: 368 LTRKRMTSLRPPTQTEALEGQTKTAIESIDEMMKTVEPRRFKEAVSYLLDEYEPEELAAL 427

Query: 759 KGKAHLKS 766
             K+ +K 
Sbjct: 428 LLKSMIKD 435


>gi|255719254|ref|XP_002555907.1| KLTH0H00638p [Lachancea thermotolerans]
 gi|238941873|emb|CAR30045.1| KLTH0H00638p [Lachancea thermotolerans]
          Length = 433

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 87/229 (37%), Gaps = 21/229 (9%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQGLRILLTVLT 591
           S+E+E    + +   ++ T L+ P         QV++  +Y  +  A       ++ V  
Sbjct: 213 SYEVESMDKVAIPSTLKTTYLLVPE--------QVKEAYLYQILTNATYNESSAIIFVNR 264

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
              AE L   L + ++RV  +HS++   ER   +   R     VL+  ++   GLDIP  
Sbjct: 265 TVTAEILRRTLKQLDVRVASLHSQMPQQERTNSLHRFRANAARVLIATDVASRGLDIPTV 324

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRREK 710
            LV   D        +  + I   GR AR   S   I +      S   AI+E  R  +K
Sbjct: 325 QLVINYD-----ISSNPDTFIHRAGRTARAGRSGESICFVAPRDVSRIEAIEE--RINKK 377

Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             E    H     +V  K +  +     E   +       ++  L  KK
Sbjct: 378 MEEFKDVH---DTAVIRKALNKVTVAKRESLMSMEKENFGERRKLHLKK 423


>gi|222086115|ref|YP_002544647.1| ATP dependent RNA helicase protein [Agrobacterium radiobacter K84]
 gi|221723563|gb|ACM26719.1| ATP dependent RNA helicase protein [Agrobacterium radiobacter K84]
          Length = 506

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 20/194 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVYDEIN--- 576
            T+  SAT    E+++     ++   R            V  R   +  +D         
Sbjct: 180 QTLFFSAT-MPAEIQKLADRFLQNPERVEVSAPASTAKTVTQRFVASHGKDYEKRAALRD 238

Query: 577 -LAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            + AQ  L+  ++    K    DL   L      V  +H ++    R  ++++ R G+  
Sbjct: 239 LIRAQTDLKNAIIFCNRKVDVADLFRSLQRHGFSVGALHGDMDQRSRTTMLQNFRDGQIQ 298

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT-- 692
           +LV  ++   GLD+P+ G V   D             +  IGR  R   S       T  
Sbjct: 299 LLVASDVAARGLDLPDVGHVFNFDVPI-----HSEDYVHRIGRTGRAGRSGAAFTLVTKR 353

Query: 693 ---ITKSIQLAIDE 703
                 +I+  I E
Sbjct: 354 DTKHIDAIEKLIGE 367


>gi|220933289|ref|YP_002512188.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219994599|gb|ACL71201.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 602

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 73/187 (39%), Gaps = 10/187 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK    +L E L  R      ++ ++   +R  ++  L+ G+ D+LV  +++  
Sbjct: 251 MLIFVRTKTETVELAERLTARGHACEALNGDIPQNQRERVVERLKKGQLDILVATDVVAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     + +  AI+ 
Sbjct: 311 GLDVERISHVLNYD-----IPHDTESYVHRIGRTGRAGRTGEAILFVAPREQRMLKAIER 365

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK---KG 760
            TR+  + +      ++N Q +     E I+  L  D     + +       +     + 
Sbjct: 366 ATRQPIEPMHMPTAGDVNAQRIAR-FKERINEALGSDDLEPFLELVTDYQQETGAEPLEI 424

Query: 761 KAHLKSL 767
            A L  L
Sbjct: 425 AAALARL 431


>gi|321313476|ref|YP_004205763.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|320019750|gb|ADV94736.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
          Length = 479

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 22/240 (9%)

Query: 525 TIVVSAT-PGSWE-LEQCQGIIVEQI-IRPTGLVDPPVE-----IRSARTQVEDVYDEIN 576
           T++ SAT P   E L +      E I I+  GL    +E     +R    +   + D + 
Sbjct: 178 TMLFSATLPQDIEKLSRQYMQKPEHIEIKAAGLTTRNIEHAVIQVRE-ENKFSLLKDVLM 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +     ++   TK     LT+ L +       +H  +   +R +++ + + G++  L
Sbjct: 237 --TENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITK 695
           V  ++   G+DI    LV   D   E     K S +   GR  R  N  K I +     K
Sbjct: 295 VATDVAARGIDIENISLVINYDLPVE-----KESYVHRTGRTGRAGNKGKAISFVTAFEK 349

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
                I+E         E  K    + + V  K  E +  +     +  + S +  +  +
Sbjct: 350 RFLADIEE-----YIGFEIQKIEAPSQEEVARKKPEFLAKMNDRPESKKDKSEELNKDIM 404


>gi|307105200|gb|EFN53450.1| hypothetical protein CHLNCDRAFT_36420 [Chlorella variabilis]
          Length = 421

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 75/200 (37%), Gaps = 18/200 (9%)

Query: 524 TTIVVSAT--PGSWELEQC------QGIIVEQIIRPTGLVDPPVEI---RSARTQVEDVY 572
            T++ SAT  P   +L         +  I  Q +  +  V   +E+   R+   ++ ++ 
Sbjct: 185 QTLMFSATWPPAIRKLASEFLCHPVRVTIGSQDLAASHSVTQVIEVIEDRARDGRLHELL 244

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                 A +  R+++ VL K+ A  + + L  +  +   +H ++  ++R   +   + G 
Sbjct: 245 QR--YHASRSNRVIIFVLYKKEAVRVEQLLQRKGWKAAAIHGDISQVQRSSAVEQFKSGA 302

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             +LV  ++   GLDIP+   V         F  +    +  IGR  R   +        
Sbjct: 303 VPLLVATDVAARGLDIPDVEAVLNYS-----FPLTTEDYVHRIGRTGRAGKTGKAHTFFV 357

Query: 693 ITKSIQLAIDETTRRREKQL 712
                  A +     RE + 
Sbjct: 358 GNNDKPRAGELINVLREAKQ 377


>gi|270610556|gb|ACZ92304.1| vasa-like protein [Scylla paramamosain]
          Length = 632

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 5/134 (3%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + + + +        ++L+ V  KR A+ +  YL     R   +H      +R E +   
Sbjct: 435 DKLAEYLRSFEDSQEKVLVFVEMKRQADFVGTYLSTNGSRSVTLHGGRYQEQREEALSAF 494

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R  ++ VLV  ++   GLDI   G V   D  K     S    +  IGR  R  N    +
Sbjct: 495 RSNQYRVLVATSVAARGLDIRGVGYVINYDLPK-----SADEYVHRIGRTGRVGNRGQAV 549

Query: 689 YADTITKSIQLAID 702
                 + + LA D
Sbjct: 550 SFYDPEQDLNLAKD 563


>gi|156553939|ref|XP_001602245.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 836

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 97/261 (37%), Gaps = 32/261 (12%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIR-SARTQVE 569
                TI+ SAT  + E++    + +++ ++            L    + IR       E
Sbjct: 329 ARTRQTILFSAT-MTEEVKDLAAVSLDKPVKVFVDSNQDVAFNLRQEFIRIRKEREGDRE 387

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   +          ++ V TK+ A  L   L    ++V  +H  +   +R+E +R  +
Sbjct: 388 AILAALICRTFHDH-TMVFVQTKKQAHRLHIVLGLLGVKVGELHGNLSQPQRLENLRKFK 446

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
             + DVL+  ++   GLDI     V            +    I  +GR AR     V + 
Sbjct: 447 DEEIDVLLATDVAARGLDISGVKTVINF-----VMPATLQHYIHRVGRTARAGRGGVSVS 501

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK-------IMEVIDPILLEDA 741
            A    +S+   +        KQ ++  K+ I P  + EK       I E ++ IL E+ 
Sbjct: 502 LAGEQERSLVKEV-------IKQAKNPVKNRIIPPDIIEKYNKKLQSIEEDVENILEEER 554

Query: 742 ATTNISIDAQQLSLSKKKGKA 762
               I+    Q + ++   K 
Sbjct: 555 QDREIAKIENQANRAENMLKE 575


>gi|118462257|ref|YP_880643.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium 104]
 gi|118163544|gb|ABK64441.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium 104]
          Length = 566

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 78/211 (36%), Gaps = 30/211 (14%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++ V TK+  E++ E L  R      ++ ++   +R   +  L+ G  D+LV  ++ 
Sbjct: 253 EAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVA 312

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           S +  IGR  R   S   +L+     + +  AI
Sbjct: 313 ARGLDVERISHVLNYD-----IPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAI 367

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761
           ++ TR                Q + E  +  ++ +  +  A    SI A   +      +
Sbjct: 368 EKATR----------------QPLTEAELPTVEDVNAQRVAKFADSITAALGAPGIDLFR 411

Query: 762 AHLKSLRKQ----MHLAADNLNFEEAARIRD 788
             ++   ++    M   A  L    A + RD
Sbjct: 412 KLVQDYEREHDVPMADIAAAL----AVQSRD 438


>gi|109079956|ref|XP_001092587.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform 3
           [Macaca mulatta]
          Length = 622

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ +    G  
Sbjct: 348 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRA 401

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 402 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 460

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 461 AIHGGKDHEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEE-----IEN 515

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 516 YVHRIGRTGRSGNTGIATTF------INKACDES 543


>gi|12325365|gb|AAG52624.1|AC024261_11 photosystem II protein psbT, putative, 5' partial; 92652-90780
           [Arabidopsis thaliana]
          Length = 347

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 15/181 (8%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPT-----GLVDPPVEIRSARTQVEDVYDEI 575
              ++SAT     LE  +  +   V  +++P      G+    V++     + + + D +
Sbjct: 152 QVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCD-L 210

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                     ++   T++  + LTE +   N  V  MH + +  ER +I+   R  K  V
Sbjct: 211 YGRLTINQ-AIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRV 269

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   G+D+     V   D        +    I  IGRA R     V +     + 
Sbjct: 270 LIASDVWARGIDVQTVSHVINYD-----IPNNPELYIHRIGRAGRFGREGVAINFVKSSD 324

Query: 696 S 696
            
Sbjct: 325 M 325


>gi|326479821|gb|EGE03831.1| ATP-dependent RNA helicase DBP2 [Trichophyton equinum CBS 127.97]
          Length = 536

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 82/209 (39%), Gaps = 21/209 (10%)

Query: 524 TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T + SAT           +  +  Q  I  Q +     +   VE+ S   + + +   +
Sbjct: 300 QTCMWSATWPKDVRQLANDFLQDYIQVYIGSQALSANHRITQIVEVVSEFEKRDRMIKHL 359

Query: 576 NLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               + +  ++L+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  
Sbjct: 360 ERIMEDKKSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSP 419

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           ++V  ++   G+D+ +   V   D     +  +    +  IGR  R   +   +   T  
Sbjct: 420 IMVATDVASRGIDVRDITHVLNHD-----YPNNSEDYVHRIGRTGRAGANGTAITLFTTE 474

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            + Q        R   ++    K  I+P+
Sbjct: 475 NAKQA-------RDLVKILTESKQQIDPR 496


>gi|295662382|ref|XP_002791745.1| ATP-dependent RNA helicase DBP2 [Paracoccidioides brasiliensis
           Pb01]
 gi|226279871|gb|EEH35437.1| ATP-dependent RNA helicase DBP2 [Paracoccidioides brasiliensis
           Pb01]
          Length = 547

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 81/209 (38%), Gaps = 21/209 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T + SAT      +  Q  + + I    G +D          VEI S   + E +   +
Sbjct: 309 QTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRERMAKHL 368

Query: 576 NLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  +IL+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  
Sbjct: 369 ERIMDDKNAKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSP 428

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           ++V  ++   G+D+ +   V   D     +  +    +  IGR  R       +   T  
Sbjct: 429 IMVATDVASRGIDVRDITHVLNYD-----YPNNSEDYVHRIGRTGRAGAKGTAITLFTTD 483

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            + Q        R    + +  K  I+P+
Sbjct: 484 NAKQA-------RDLVAILNESKQQIDPR 505


>gi|148261622|ref|YP_001235749.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146403303|gb|ABQ31830.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
          Length = 525

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 22/179 (12%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            +   ++ SAT     + +    +  + +R    V   VE +    +++     +    +
Sbjct: 234 RQRQAVMFSAT-----MPKPIRALAGEFLRDPREVAVSVESKPVD-RIDQQVLLLAPEEK 287

Query: 581 QG-----------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           +             R ++   TK  A+ +T +L +  I    +H      +R   +   R
Sbjct: 288 KDKLAWLLADVAVERAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFR 347

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+  VLV  ++   G+D+     V   +           S +  IGR AR     V +
Sbjct: 348 SGRIRVLVATDIAARGIDVDNVSHVVNFE-----LPNVPESYVHRIGRTARAGAEGVAI 401


>gi|324507937|gb|ADY43357.1| ATP-dependent RNA helicase DDX17 [Ascaris suum]
          Length = 625

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 14/160 (8%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++         VE    + ++  +  +I    +   + L+ V TKR A+
Sbjct: 402 LELAANHNITQVV-------EVVEEYQKQGRMMTLLTDIMNQPEC--KTLVFVETKRKAD 452

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DLT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V  
Sbjct: 453 DLTRSMRRDGWPTLCIHGDKNQGERDWVLSEFKSGKTPILLATDVAARGLDVDDIKFVIN 512

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            D     +  +    +  IGR AR           T + +
Sbjct: 513 YD-----YPNNSEDYVHRIGRTARCEKKGTAYTFFTPSNA 547


>gi|297830946|ref|XP_002883355.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329195|gb|EFH59614.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 612

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 8/127 (6%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +G + ++   TKR A+ L+ Y   R+ +   +H ++   +R   +   R G F++LV  
Sbjct: 344 AKGGKCIVFTQTKRDADRLS-YALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVAT 402

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   GLD+P   L+            +  + +   GR  R       +   +  +S   
Sbjct: 403 DVAARGLDVPNVDLII-----HYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQS--R 455

Query: 700 AIDETTR 706
           A+    R
Sbjct: 456 AVKIIER 462


>gi|219113561|ref|XP_002186364.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583214|gb|ACI65834.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 370

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 80/203 (39%), Gaps = 26/203 (12%)

Query: 510 NRPLRFEEWNCLR-----PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVD 556
           NR  + + ++  R        +++SAT  +  L+  +  + + I        +   G+  
Sbjct: 153 NRGFKEQIYDIYRFLPASTQVVLMSATLPASVLDMTRKFMNDPIRILVRRDELTLEGIRQ 212

Query: 557 PPVEIRSARTQVE---DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
             + +     + +   D+YD + +      + ++   TK+  + L   + ++N  V  MH
Sbjct: 213 FFINVEKEEWKFDTLCDLYDTLTIT-----QAVIFCNTKQKVDWLAGKMKDKNFTVSAMH 267

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            ++    R  ++ + R G   VL+  +L   G+D+ +  LV   D        ++   I 
Sbjct: 268 GDMDQGARDAVMEEFRSGSSRVLIATDLWGRGIDVQQVSLVICYD-----LPTNRELYIH 322

Query: 674 TIGRAARNVNSKVILYADTITKS 696
            IGR+ R     + +       +
Sbjct: 323 RIGRSGRFGRKGIAINFVREEDT 345


>gi|222480951|ref|YP_002567188.1| ERCC4 domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222453853|gb|ACM58118.1| ERCC4 domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 836

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 76/191 (39%), Gaps = 23/191 (12%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM-------HSEVKTLERIEIIRDLRLG 631
             +G R +L   ++  AE L E+L       +++          +   ++ E + + + G
Sbjct: 366 INEGERAILFTESRDTAEALVEFLSTSFDVRKFVGQGDKEGSDGMSQKQQQETLDEFKAG 425

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YA 690
            F+VLV  ++  EGLD+PE  LV   +      + +    IQ  GR  R    KV++  A
Sbjct: 426 DFEVLVSTSVAEEGLDVPEVDLVCFYEP-----VPTAIRSIQRKGRTGRQAEGKVVVLMA 480

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
           +         I   +RRREK++              ++  + I+  + +  A  +     
Sbjct: 481 EDTRDEAFFWI---SRRREKKMASQLAE-------LKEATDDIEETVDDGQAGLDAFAGG 530

Query: 751 QQLSLSKKKGK 761
              + +K +  
Sbjct: 531 SAGNDTKPEAD 541


>gi|86742488|ref|YP_482888.1| DEAD/DEAH box helicase-like protein [Frankia sp. CcI3]
 gi|86569350|gb|ABD13159.1| DEAD/DEAH box helicase-like [Frankia sp. CcI3]
          Length = 649

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 70/181 (38%), Gaps = 17/181 (9%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT PG         +++   +  EQ      +      +   R    D  + + 
Sbjct: 264 QTMLFSATMPGPVISLARRFMKRPVHVRAEQPDEGRTVPTTRQHV--FRAHALDKMEVLA 321

Query: 577 LAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              Q G R   ++ V T+R A+ + E L +R      +H ++   +R + +R  R GK D
Sbjct: 322 RVLQAGGRGLAMVFVRTRRTADKVAEDLAKRGFAAAAVHGDLGQGQREQALRAFRSGKVD 381

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           VLV  ++   G+DI     V             +   +  IGR  R   S V I + D  
Sbjct: 382 VLVATDVAARGIDINGVTHVVNYQC-----PEDENVYLHRIGRTGRAGESGVAITFVDWD 436

Query: 694 T 694
            
Sbjct: 437 D 437


>gi|146278024|ref|YP_001168183.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145556265|gb|ABP70878.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 507

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 80/262 (30%), Gaps = 39/262 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++     LL       T  QI  +   D      + + GF  P       L   
Sbjct: 130 TPGRLLDHFERGKLLL------TGVQIMVVDEADR-----MLDMGFI-PDIERIFSLTP- 176

Query: 517 EWNCLRPTTIVVSATPGSWELEQ---------CQGIIVEQIIRPTGLVDPPVEI------ 561
                   T+  SAT    E+E+          +  +  Q      +    ++I      
Sbjct: 177 ----FTRQTLFYSATMAP-EIERITNTFLTGAVKIEVARQATTSETIEQKLIQITPTRKE 231

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           RS   +   +   I    +     ++    K   + + + L +       +H ++   +R
Sbjct: 232 RSFADKRAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLDQSQR 291

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + +   R G   +LV  ++   GLDIP    V   D             +  IGR  R 
Sbjct: 292 TKTLDGFRDGTLHLLVASDVAARGLDIPAVSHVFNFD-----LPTHPEDYVHRIGRTGRA 346

Query: 682 VNS-KVILYADTITKSIQLAID 702
               K    A    +    AI+
Sbjct: 347 GRKGKAFSIAVPSDEKYLAAIE 368


>gi|307324569|ref|ZP_07603776.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306889813|gb|EFN20792.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 463

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 17/155 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D    +   A +  R+LL + TKR  + LT +L    +R   +H      +R   +   +
Sbjct: 273 DKRSVVTRVAARDGRVLLFLDTKRAVDRLTRHLLTSGVRAAALHGGKSQPQRTRTLDQFK 332

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G    LV  N+   G+ + +  LV  +D   +         +   GR AR   S  ++ 
Sbjct: 333 SGHVTALVATNVAARGIHVDDLDLVVNVDPPAD-----HKDYLHRGGRTARAGGSGSVIT 387

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
             T  +           RRE          I PQ+
Sbjct: 388 LVTPDQ-----------RREMGRLM-ADAGITPQT 410


>gi|302562189|ref|ZP_07314531.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302479807|gb|EFL42900.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 451

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 73/215 (33%), Gaps = 21/215 (9%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC----QGIIVEQIIRP 551
            + + GF LP   D       +        ++ SAT      +         +V  +  P
Sbjct: 164 QMCDMGF-LPQVTDALDQVHPD-----GQRMLFSATLDRDVDKLVGRYLHDPVVHSVDPP 217

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRY 611
            G V    E         D Y  +   A +  R+LL + TK   + LT +L    +    
Sbjct: 218 AGAVTTM-EHHVLVVHGPDRYAVVTEIAARDGRVLLFLDTKHAVDQLTRHLRASGVPAGA 276

Query: 612 MHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671
           +H      +R   +   + G   VLV   +   GL I +  LV  +D   +         
Sbjct: 277 LHGGKSQPQRTRTLAQFKDGGITVLVATGVAARGLHIDDLDLVVNVDPPAD-----PKDY 331

Query: 672 IQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           +   GR AR   S  ++   T       A  ET+R
Sbjct: 332 VHRAGRTARAGASGSVVTLVTAG-----ARRETSR 361


>gi|300362252|ref|ZP_07058428.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           gasseri JV-V03]
 gi|300353243|gb|EFJ69115.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           gasseri JV-V03]
          Length = 464

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 9/135 (6%)

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           II PT + +  +++ S   + E +Y  + +   Q    L+   TK+  ++LT+YL E+ +
Sbjct: 220 IIAPT-IQNDLIDVGSRDKK-EILYKLLTM--GQPYLALVFANTKKTVDELTDYLEEQGL 275

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H  +   ER  IIR +R G++  +V  +L   G+D+P   LV   +  K+     
Sbjct: 276 KVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPGVSLVVNYEIPKD----- 330

Query: 668 KTSLIQTIGRAARNV 682
              +I  IGR  RN 
Sbjct: 331 LEFVIHRIGRTGRNG 345


>gi|145353647|ref|XP_001421118.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581354|gb|ABO99411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 755

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 98/243 (40%), Gaps = 39/243 (16%)

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           P  LV+  ++++  ++  ++ +    ++       ++   TK+ A  L   +   +I+  
Sbjct: 363 PKRLVEEVLKLKPNQSAQKEAFLMAIVSRSYDKSTIIFSQTKQEAHRLKIIMGLSDIKAG 422

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H ++   +R+  + + R G    L+  ++   GLDIP    V   DA K     +  S
Sbjct: 423 ELHGDMTQTQRLAALDEFRTGTVTHLIATDVAARGLDIPSVDAVISFDAPK-----TLAS 477

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH---NKKHNINPQSVK- 726
            +  +GR AR       L            ++E+ R+  K +     N K  I P ++  
Sbjct: 478 YLHRVGRTARAGKKGTALTF----------MEESDRKLVKTIAKRGANLKARIVPGNIVA 527

Query: 727 ---EKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
              +KI ++ + I+  +                +++ +  L+    + + A++ L  E A
Sbjct: 528 EWHKKIEDMEEQIVQINY---------------EERTERQLQKAEMEANKASNIL--EHA 570

Query: 784 ARI 786
           A I
Sbjct: 571 AEI 573


>gi|323173106|gb|EFZ58737.1| ATP-dependent RNA helicase srmB [Escherichia coli LT-68]
          Length = 442

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 12/181 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT  G    +  + ++ + + +          +I     + +D+  +  L  
Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DIP+   V   D  + G      + +  IGR AR       +      
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSG-----DTYLHRIGRTARAGRKGTAISLVEAH 355

Query: 695 K 695
            
Sbjct: 356 D 356


>gi|291486518|dbj|BAI87593.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. natto BEST195]
          Length = 479

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 22/240 (9%)

Query: 525 TIVVSAT-PGSWE-LEQCQGIIVEQI-IRPTGLVDPPVE-----IRSARTQVEDVYDEIN 576
           T++ SAT P   E L +      E I I+  GL    +E     +R    +   + D + 
Sbjct: 178 TMLFSATLPEDIEKLSRQYMQNPEHIEIKAAGLTTRNIEHAVIQVRE-ENKFSLLKDVLM 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +     ++   TK     LT+ L +       +H  +   +R +++ + + G++  L
Sbjct: 237 --TENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITK 695
           V  ++   G+DI    LV   D   E     K S +   GR  R  N  K I +     K
Sbjct: 295 VATDVAARGIDIENISLVINYDLPVE-----KESYVHRTGRTGRAGNKGKAISFVTAFEK 349

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
                I+E         E  K    + + V  K  E +  +     +  + S +  +  +
Sbjct: 350 RFLADIEE-----YIGFEIQKIEAPSQEEVARKKPEFLAKLNDRPESKKDKSEELNKDIM 404


>gi|171463886|ref|YP_001797999.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193424|gb|ACB44385.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 479

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 88/239 (36%), Gaps = 24/239 (10%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT--PGSWEL 537
           + Q+  +   +  R     + GF LP       L   +       T++ SAT  P   +L
Sbjct: 179 LSQVEILVLDEADRM---LDMGF-LPDLQRIISLIPAQ-----RQTLLFSATFSPEIKKL 229

Query: 538 EQC--QGIIVEQIIR---PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL--RILLTVL 590
            Q   +  +  ++ R       V   V + S+  +   +   +   A+ GL  + ++   
Sbjct: 230 AQSYLRSPVTVEVARQNAAADTVKQVVHMVSSADKQRAIVKVLEARARAGLSRQCIIFTN 289

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           ++     L+  L    I+   +H +    ER   +   + G  + LV  ++   GLDIP+
Sbjct: 290 SRLGCAKLSRTLERDGIKAGAIHGDKGQGERTLTLDAFKSGAIEALVATDVAARGLDIPD 349

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
              V   +        +    I  IGR  R  +    I   D   K +   I++  +R+
Sbjct: 350 MPCVINHE-----LPYNAEDFIHRIGRTGRAGSKGDAIALVDLSEKRLLDDIEKLMKRK 403


>gi|163746467|ref|ZP_02153825.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380352|gb|EDQ04763.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 438

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 74/216 (34%), Gaps = 19/216 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----P 551
            + + GF      D R  +          T++ SAT     + +     +   IR    P
Sbjct: 160 QMLDMGFI----HDLR--KISNLIPKERQTMLFSAT-MPKLMNEIANSYLNSPIRIEVSP 212

Query: 552 TGLVDPPV--EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
            G     V  E+       +    +  LA  +G R L+   TK  +E L + L +     
Sbjct: 213 PGKAADKVTQEVHFIAKAEKTELLKELLAKHKGERALVFGRTKHGSEKLMKTLVKAGFDA 272

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H      +R   I   + G   VLV  ++   GLDIP+   V   +           
Sbjct: 273 ASIHGNKSQGQRDRAIAGFKGGDITVLVATDVAARGLDIPDVKHVYNFE-----LPNVPD 327

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDET 704
           + +  IGR AR       +      +  +  AI +T
Sbjct: 328 NYVHRIGRTARAGKDGAAVAFCAPDEMGELKAIQKT 363


>gi|319902155|ref|YP_004161883.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
 gi|319417186|gb|ADV44297.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
          Length = 415

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 76/187 (40%), Gaps = 27/187 (14%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           ++      TI+ SAT                 E++       ++I++   +         
Sbjct: 175 KFLPKERQTIMFSATMPTKIQQLANNILNNPAEVKLAVSKPADKIVQAAYVC-------- 226

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q   +   +  A Q   R+++   +K   +++T+ L +  + V  MHS+++  +R +
Sbjct: 227 YENQKLGIIRNL-FAEQTPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQRED 285

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++ + + G+ ++LV  +++  G+DI +  LV   D             +  IGR AR  N
Sbjct: 286 VMYEFKAGRINILVATDIVARGIDIDDIRLVINYDV-----PHDSEDYVHRIGRTARANN 340

Query: 684 SKVILYA 690
             V L  
Sbjct: 341 DGVALTF 347


>gi|241563473|ref|XP_002401718.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215501910|gb|EEC11404.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 371

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 10/193 (5%)

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDVYDE 574
            ++   +   ++ SAT     +   Q  +   +    G  +    EI+     + D    
Sbjct: 164 NKFLPEKRQVLMFSATMPKHIIALSQKYLNNPVRITVGATNKAAAEIKQESLHISDKEKF 223

Query: 575 INLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             L  Q G R   +++ V TKR A+ L + L   N +   +H ++   +R  +I   R  
Sbjct: 224 SELTKQLGNREGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQHQRERVILSFRKS 283

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
              ++V  ++   GLDIP    V   D             +  IGR  R   +   L   
Sbjct: 284 NHRIMVATDVAARGLDIPHTQHVINYD-----LPMCPEDYLHRIGRTGRAGATGYALSFI 338

Query: 692 TITKSIQ-LAIDE 703
           +    I+  AID 
Sbjct: 339 SPDDVIRWRAIDR 351


>gi|328767309|gb|EGF77359.1| hypothetical protein BATDEDRAFT_91848 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 630

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 11/191 (5%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL-----VDPPVEIRSARTQVEDV 571
            +   +  T++ SAT         +  ++  ++   G      +D   E+   + Q   +
Sbjct: 365 SFFKSQRQTLLFSATMPKKIQNFAKSALISPVVVNVGRAGAANLDVIQEVEYVK-QEAKM 423

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
              +    +    +++    K   +D+ EYL  + I    +H      ER   I+  +  
Sbjct: 424 VYLLECLQKTPPPVVVFAENKNDVDDIHEYLLLKGIEAVAIHGSKDQEEREFAIKSFKAC 483

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           K DVLV  ++  +GLD      V   D  KE         +  IGR  R+  + V     
Sbjct: 484 KADVLVATDVASKGLDFSMIQHVINYDMPKE-----IEDYVHRIGRTGRSGKTGVATTFI 538

Query: 692 TITKSIQLAID 702
               S Q+ +D
Sbjct: 539 NRNSSEQILLD 549


>gi|326913476|ref|XP_003203064.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like [Meleagris
           gallopavo]
          Length = 695

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 469 DLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 528

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 529 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 575


>gi|326430321|gb|EGD75891.1| DEAD box polypeptide 41 [Salpingoeca sp. ATCC 50818]
          Length = 619

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 85/228 (37%), Gaps = 23/228 (10%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
                 + + GF      ++    F  +N  R  T++ SAT  +   +  Q  +V+ I  
Sbjct: 344 MDEADRMVDLGFE-----EDIRTIFSFFNGQR-QTVLFSATMPTKIRDFAQSALVDPITV 397

Query: 551 PTG--------LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
             G        +V     +R    ++  + + +         +++    K   +D+ EYL
Sbjct: 398 NVGRAGAASLDVVQEVEHVRP-EAKIVYLLECLQKTPPP---VMIFSEKKADVDDIHEYL 453

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
             + ++   +H      ER   ++  + G+ DVLV  ++  +GLD      V   D   E
Sbjct: 454 LLKGVQAVAIHGGKDQEERDMAVKAFKKGQKDVLVATDIASKGLDFKGIQHVINFDMPDE 513

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKS---IQLAIDETTRR 707
             L +    I   GR+ R   +   +  +    S   ++  + E  +R
Sbjct: 514 --LENYVHRIGRTGRSGRTGLATTFINDEVPEISLLDLKYLLKEAKQR 559


>gi|323971097|gb|EGB66344.1| srmB protein [Escherichia coli TA007]
          Length = 207

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 10/184 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +VLV  ++  
Sbjct: 13  RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAA 72

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA--- 700
            G+DIP+   V   D  + G      + +  IGR AR       +        + L    
Sbjct: 73  RGIDIPDVSHVFNFDMPRSG-----DTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 127

Query: 701 --IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
             I+E  + R       K    + +   +   +V+     +  A        ++     K
Sbjct: 128 RYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTK 187

Query: 759 KGKA 762
               
Sbjct: 188 NIGK 191


>gi|317470864|ref|ZP_07930245.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
 gi|316901691|gb|EFV23624.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 478

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 14/188 (7%)

Query: 529 SATPGSWELEQCQGIIVEQII-------RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           SAT      E   G I E ++            +   +   S   + +   D +    + 
Sbjct: 183 SATLKPEIRELADGFIPEAVLVMQEAGEEQASAITEKLYFASQERKYDTFLDILMD--EN 240

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
               ++   T+ M   L + L  + I    +H +++  ER++ +   R G F  L+  ++
Sbjct: 241 PQSCMIFCGTREMTNVLFQKLRRKRIFCGMLHGDMEQRERLKTVDAFRRGGFRFLIATDV 300

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
              G+D  E   V   D     F   K + +  IGR  RN NS   +   T      L  
Sbjct: 301 AARGIDFEEISHVVNYD-----FPTGKETYVHRIGRTGRNGNSGTAVSLVTENDQRMLKQ 355

Query: 702 DETTRRRE 709
            ET   RE
Sbjct: 356 VETYLGRE 363


>gi|297303643|ref|XP_001095294.2| PREDICTED: ATP-dependent RNA helicase DDX3X [Macaca mulatta]
          Length = 738

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 530 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 589

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 590 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 636


>gi|288928387|ref|ZP_06422234.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288331221|gb|EFC69805.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 447

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 73/194 (37%), Gaps = 11/194 (5%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            TI+ SAT  P   +L +       +I          +  ++           +    + 
Sbjct: 183 QTIMFSATMPPKIEQLAKTLLKNPVEIKLAVSKPAEKIAQKAYLCYEPQKLKVLEDIFKA 242

Query: 582 GL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G   R+++    K+  +++   L    I    MHS++   ER +++   + G  DVLV  
Sbjct: 243 GHLNRVIIFSGKKQKVKEINRALVRMKINSDEMHSDLSQEERDQVMFKFKSGATDVLVAT 302

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++L  G+DI +  +V   D   +         +  IGR AR     V +   +       
Sbjct: 303 DILSRGIDIDDITMVINYDVPHDV-----EDYVHRIGRTARAERDGVAITLISDQDVYYF 357

Query: 700 AIDETTRRREKQLE 713
              +  R  EK++E
Sbjct: 358 --QQIERFLEKEIE 369


>gi|323342311|ref|ZP_08082543.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463423|gb|EFY08617.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 594

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR--------SARTQVEDVYDEI 575
                SAT    E+ +     + +  R T   +     R         +R +V+     +
Sbjct: 194 QFAFFSAT-MPKEIVKLSEKFLVEPERITLSRNNLTVSRIKQIYYTVESRDKVDLTIQLL 252

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            L    G   ++   TK+M ++LT  L +       +H ++K   R  ++   + G   V
Sbjct: 253 QLHKTSG--TMIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSV 310

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   G+D+    +V   D  +E         +  IGR  R     + +   +  +
Sbjct: 311 LIATDVAARGIDVDSMDVVINYDIPQE-----LEYYVHRIGRTGRAGKEGLAITLVSRRQ 365

Query: 696 SIQLAIDETTR 706
             + AI +  R
Sbjct: 366 --RYAIKQIER 374


>gi|209519764|ref|ZP_03268550.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209499774|gb|EDZ99843.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 466

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 83/246 (33%), Gaps = 17/246 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           R  T++ SAT           I+   V   + P       ++  +     + +       
Sbjct: 179 RRQTLLFSATFTDDIRAMAANILRGPVNISVSPPNATASKIKQWVVPVDKKNKPDLFMHL 238

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +A       L+ V T+   + L   L E    V  +H +     R+  +   +  +  +L
Sbjct: 239 VAENSWEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTREVHML 298

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLDI +  LV  +D             +  IGR  R   S V +      ++
Sbjct: 299 VATDVAARGLDIDDLPLVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADEA 353

Query: 697 IQLAIDETTRR----REKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
            QLA  E   R    R+++     +H   PQ+      ++I             +     
Sbjct: 354 PQLAAIEALIRQTLPRKEEPGFEAEHR-VPQT--SATGQIIKKPKKPKKPKVPQAAPGAM 410

Query: 753 LSLSKK 758
             LSKK
Sbjct: 411 QVLSKK 416


>gi|157823027|ref|NP_001101716.1| ATP-dependent RNA helicase DDX3X [Rattus norvegicus]
 gi|149044331|gb|EDL97652.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Rattus
           norvegicus]
          Length = 311

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 82  DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 141

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 142 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 188


>gi|74272713|gb|ABA01152.1| eukaryotic translation initiation factor [Chlamydomonas incerta]
          Length = 148

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   T+R  + LT+ + ER+  V   H ++    R  I+R+ R G   VL+  +LL  G
Sbjct: 18  VIFANTRRKVDWLTDKMRERDHTVSATHGDMDQNTRDVIMREFRSGSSRVLITTDLLARG 77

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           +D+ +  LV   D           + +  IGR+ R     V I +     + +   I  
Sbjct: 78  IDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQDIQR 131


>gi|75773731|gb|AAI04622.1| DDX50 protein [Bos taurus]
          Length = 446

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 39/256 (15%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 29  PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 88

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 89  DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 147

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 148 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 202

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 203 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 249

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 250 AVDFFRPSAQRLIEEK 265


>gi|87121888|ref|ZP_01077774.1| ATP-dependent RNA helicase [Marinomonas sp. MED121]
 gi|86162917|gb|EAQ64196.1| ATP-dependent RNA helicase [Marinomonas sp. MED121]
          Length = 433

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 100/266 (37%), Gaps = 24/266 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-----EDVYDEINLA 578
            T ++SAT    +L Q    I +Q      + D    I S   Q+     +D + E  + 
Sbjct: 180 QTAMLSATLDGDKLGQLADKIFKQTPEAIQINDSTRTIPSQIKQIAYRVDDDAHKEAIVK 239

Query: 579 ---AQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               Q+G  + LL V  +   +     +   +I    +H  +K  +R E ++ ++ G+  
Sbjct: 240 HLLKQEGVQQALLFVSNRDHVDVWVNKIRALHIMCSGLHGVMKQGDRSEHMKQMQKGRLQ 299

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           VLV  ++   G+D+PE   V  L        +   S +   GRA+R+ N    I   D+ 
Sbjct: 300 VLVATDVAARGIDLPEINTVINLR-----LPQKSDSYVHRAGRASRDGNEGTCISLIDST 354

Query: 694 TKSIQLAIDETTRRREKQ--LEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
             ++   I     +R  Q  ++  +   +  ++                     +   A 
Sbjct: 355 DLAMMEKI-----QRYMQSPIKFGRIEGLEAKTKVRSPATKSKKKKAPKLDKKALKAAAT 409

Query: 752 QLSLSKKKGKAHLKSLRKQMHLAADN 777
                ++K +  + +L+K M  A  +
Sbjct: 410 AEEKKQRKIQRKI-NLQK-MKKALKD 433


>gi|195128419|ref|XP_002008661.1| GI13618 [Drosophila mojavensis]
 gi|193920270|gb|EDW19137.1| GI13618 [Drosophila mojavensis]
          Length = 595

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G   VL+   L+  
Sbjct: 376 VLVFVQSKERAKQLFEELLYDGINVDVIHAERTQHQRDNCVRAFREGHIWVLICTELMGR 435

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           G+D     LV   D     F  SK S I  IGR  R       + +      +   +I +
Sbjct: 436 GIDFKGVNLVINYD-----FPPSKISYIHRIGRTGRAGRPGRAVTFFTQDDTANLRSIAQ 490


>gi|167894911|ref|ZP_02482313.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 7894]
          Length = 483

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I + Q I     +   V     R   + + D + 
Sbjct: 245 QTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLL 304

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                    ++   TK  A+ L   L +   +   +H ++    R   IR LR  +  VL
Sbjct: 305 RDVALDQ-AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVL 363

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 364 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 416

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 417 EQGALKRIER 426


>gi|154271069|ref|XP_001536388.1| hypothetical protein HCAG_08709 [Ajellomyces capsulatus NAm1]
 gi|160380608|sp|A6RGE3|DBP2_AJECN RecName: Full=ATP-dependent RNA helicase DBP2
 gi|150409611|gb|EDN05055.1| hypothetical protein HCAG_08709 [Ajellomyces capsulatus NAm1]
          Length = 542

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 83/210 (39%), Gaps = 22/210 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T + SAT      +  Q  + + I    G +D          VEI S   + + +   +
Sbjct: 305 QTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHL 364

Query: 576 N--LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +  + A +  ++L+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK 
Sbjct: 365 DRIMEANKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKS 424

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+ +   V   D     +  +    +  IGR  R       +   T 
Sbjct: 425 PIMVATDVASRGIDVRDITHVLNYD-----YPNNSEDYVHRIGRTGRAGAKGTAITLFTT 479

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
             + Q        R    +    K  I+P+
Sbjct: 480 DNAKQA-------RDLVAILSESKQQIDPR 502


>gi|147770303|emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera]
          Length = 666

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 8/122 (6%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +G + ++   TKR A+ L  Y   RN R   +H ++   +R   +   R G F+VLV  
Sbjct: 358 AKGGKCIVFTQTKRDADRLA-YAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVAT 416

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSI 697
           ++   GLDIP   L+            S    +   GR  R       +++YA+   +++
Sbjct: 417 DVAARGLDIPNVDLII-----HYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTV 471

Query: 698 QL 699
           + 
Sbjct: 472 RF 473


>gi|333024583|ref|ZP_08452647.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
 gi|332744435|gb|EGJ74876.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
          Length = 527

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 12/181 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------EDVY 572
           +  T++ SAT PG+      + +     I  T   D    + +    V         ++ 
Sbjct: 147 KRQTMLFSATMPGAVVSLARRYMSQPTHINATSPDDEGATVANTEQHVFRAHSMDKPEMV 206

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +GL +++   TKR A D++E L  R      +H ++    R + +R  R GK
Sbjct: 207 ARILQAEGRGL-VMIFCRTKRTAADISEQLQRRGFAAGAVHGDLGQGAREQALRAFRNGK 265

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            DVLV  ++   G+D+     V      ++   ++    I   GRA R+  +  ++  D 
Sbjct: 266 VDVLVCTDVAARGIDVEGVTHVINYQTPEDE--KTYLHRIGRTGRAGRSGTAVTLVDWDD 323

Query: 693 I 693
           I
Sbjct: 324 I 324


>gi|260913800|ref|ZP_05920275.1| ATP-dependent RNA helicase DeaD [Pasteurella dagmatis ATCC 43325]
 gi|260632113|gb|EEX50289.1| ATP-dependent RNA helicase DeaD [Pasteurella dagmatis ATCC 43325]
          Length = 610

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 90/281 (32%), Gaps = 53/281 (18%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP---PVEIRSARTQVEDVYDEINLA- 578
             T + SAT            + E I R T         ++I+S +T   D+        
Sbjct: 181 HQTALFSAT------------MPEPIRRITKRFMKDPKEIKIKSTQTTNPDITQSCWYVH 228

Query: 579 -------------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
                         +     ++   TK    D+TE L +   R   ++ ++    R + +
Sbjct: 229 GFRKNDALLRFLEVENFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTL 288

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             LR G  D+LV  ++   GLD+    LV   D           S +  IGR  R   + 
Sbjct: 289 ERLRNGSLDILVATDVAARGLDVERISLVVNYD-----IPLDAESYVHRIGRTGRAGRTG 343

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN 745
             L                   RE++L  N +H       K+ I EV  P      A   
Sbjct: 344 RALLFVEP--------------RERRLLRNIEH-----LTKKPITEVEVPNHEVLQACRR 384

Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
               A+     +       +SL + M  A  +     AA +
Sbjct: 385 EKFKAKITVQLEHHDLELYRSLLEDMFTADQDQEDIAAAML 425


>gi|194227826|ref|XP_001491482.2| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box
           protein 3, X-chromosomal) (Helicase-like protein 2)
           (HLP2) (DEAD box, X isoform) [Equus caballus]
          Length = 762

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 533 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 592

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 593 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 639


>gi|170742455|ref|YP_001771110.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168196729|gb|ACA18676.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 482

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 60/198 (30%), Gaps = 31/198 (15%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVEDVYDEINLAAQQG 582
            T+  SAT    E+++     +   +R        +E+ R A T        +    +  
Sbjct: 179 QTLFFSAT-MPPEIQRLADDFLHNPVR--------IEVARPASTASTIAQRLVATGGEGH 229

Query: 583 LR----------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            +                 L+    KR    L   L      V  +H ++    R+  + 
Sbjct: 230 EKRKTLRGLIRGAVELRNGLIFCNRKRDVAQLQRSLANHGFNVAALHGDMDQRARMAALD 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R G+  +LV  ++   GLDIP    V   D             +  IGR  R   S  
Sbjct: 290 AFRSGEVPLLVASDVAARGLDIPAVSHVFNFDV-----PHHAEDYVHRIGRTGRAGRSGA 344

Query: 687 ILYADTITKSIQLAIDET 704
                       LA  E+
Sbjct: 345 AFTLVGRGDEKALAAIES 362


>gi|168011049|ref|XP_001758216.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690672|gb|EDQ77038.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 414

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 77/198 (38%), Gaps = 18/198 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L       V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 205 YDIFQLLPQKLQVGVFSATMPPEALEITRKFMNKPVKILVKRDELTLEGIKQFYVNVDRE 264

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ + T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 265 EWKLDTLCDLYETLAIT--QSVIFINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDII 322

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 323 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 377

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +       +   I
Sbjct: 378 GVAINFVTRDDDRMLQDI 395


>gi|123390063|ref|XP_001299820.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|123391502|ref|XP_001300083.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121880749|gb|EAX86890.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121881062|gb|EAX87153.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 865

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 89/225 (39%), Gaps = 36/225 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----------PTGLVDPPVEI-RSARTQVEDVY 572
            T++ SAT    E++      + + IR             +    +E  R +  Q+ ++ 
Sbjct: 663 QTLMFSAT-WPDEVQFMAQNYLGEYIRVIVNSRELTININIKQMVIEKDRDSLRQLGEIV 721

Query: 573 DEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + I  +       +I++   TKR  E+  +YL    I+V Y H +V  ++R + +   + 
Sbjct: 722 EGIKRSKGNESYPKIIIFCKTKRTVEEAHDYLAPH-IKVVYTHGDVNQIDREKALNAFKH 780

Query: 631 GKFDV-LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
             + + +V   +L  G+D+ +   V  LD        S T     IGR  R   + V   
Sbjct: 781 ANYPIAMVCTAVLSRGIDVNDITHVVNLD-----MPDSITEYAHRIGRTGRMDRTGV--- 832

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
                     AI    RR++ +L +  +  +  +   + I +++ 
Sbjct: 833 ----------AISLFDRRKDDRLRYELRKYM--EQAGQDIPDILQ 865


>gi|15223841|ref|NP_175549.1| eukaryotic translation initiation factor 4A, putative / eIF-4A,
           putative [Arabidopsis thaliana]
 gi|108861889|sp|Q9C8J1|RH34_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 34
 gi|4836949|gb|AAD30651.1|AC006085_24 RNA helicase [Arabidopsis thaliana]
 gi|16604541|gb|AAL24276.1| At1g51380/F11M15_24 [Arabidopsis thaliana]
 gi|18958046|gb|AAL79596.1| At1g51380/F11M15_24 [Arabidopsis thaliana]
 gi|332194539|gb|AEE32660.1| DEAD-box ATP-dependent RNA helicase 34 [Arabidopsis thaliana]
          Length = 392

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 15/181 (8%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPT-----GLVDPPVEIRSARTQVEDVYDEI 575
              ++SAT     LE  +  +   V  +++P      G+    V++     + + + D +
Sbjct: 197 QVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCD-L 255

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                     ++   T++  + LTE +   N  V  MH + +  ER +I+   R  K  V
Sbjct: 256 YGRLTINQ-AIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRV 314

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   G+D+     V   D        +    I  IGRA R     V +     + 
Sbjct: 315 LIASDVWARGIDVQTVSHVINYD-----IPNNPELYIHRIGRAGRFGREGVAINFVKSSD 369

Query: 696 S 696
            
Sbjct: 370 M 370


>gi|291403975|ref|XP_002718260.1| PREDICTED: eukaryotic translation initiation factor 4A-like
           [Oryctolagus cuniculus]
          Length = 319

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 5/105 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ + T+R  + LTE ++ R++ V  MH ++   ER  I+R+ R G   VL+  +LL 
Sbjct: 187 QAVIFINTRREVDWLTEKMHARDVTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLA 246

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+D+ +  LV   D        ++ + I  IG   R  +  V +
Sbjct: 247 RGIDVQQVSLVINYD-----LPTNRENYIHRIGHGGRFGSKGVAI 286


>gi|237809398|ref|YP_002893838.1| ATP-dependent RNA helicase RhlB [Tolumonas auensis DSM 9187]
 gi|259585616|sp|C4LB49|RHLB_TOLAT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|237501659|gb|ACQ94252.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 425

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++   TK   ED+  +L     RV  +  +V   +R++I+ D   G  DVLV  ++ 
Sbjct: 257 EKAIIFANTKHGCEDVHAWLQADGHRVGLLTGDVPQKKRLKILEDFTAGLLDVLVATDVA 316

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAI 701
             GL IP+   V   D             +  IGR  R   S   I +A          I
Sbjct: 317 ARGLHIPDVSHVFNYD-----LPDDAEDYVHRIGRTGRAGRSGHAISFACEDYAFNLPEI 371

Query: 702 DE 703
           +E
Sbjct: 372 EE 373


>gi|212544462|ref|XP_002152385.1| DEAD/DEAH box RNA helicase, putative [Penicillium marneffei ATCC
           18224]
 gi|210065354|gb|EEA19448.1| DEAD/DEAH box RNA helicase, putative [Penicillium marneffei ATCC
           18224]
          Length = 593

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 1/117 (0%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TK  A+ L ++LY R +    +HS+    ER + +   R GK  +L+   +  
Sbjct: 397 RTLIFVNTKAQADRLDDFLYNRGLPSTSIHSDRTQREREDAMSAFRSGKTPILIATGVSS 456

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            GLDI     V   D             +  IGR AR  N  +        ++  +A
Sbjct: 457 RGLDIKNVMHVINFDLPSSDQG-GIDEYVHRIGRTARIGNEGIATSLYNHDRNTDIA 512


>gi|124505073|ref|XP_001351278.1| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
 gi|4493972|emb|CAB39031.1| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
 gi|117956282|gb|ABK58709.1| RNA helicase [Plasmodium falciparum]
 gi|117956284|gb|ABK58710.1| RNA helicase [Plasmodium falciparum]
          Length = 433

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 72/213 (33%), Gaps = 18/213 (8%)

Query: 517 EWNCLRPTTIVVSAT-PG------SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           ++       ++ SAT P       +  L     I +   +   G+      ++    Q  
Sbjct: 228 KFLPKEKQILMYSATFPVTVKEFRAIYLSDAHEINLMDELTLKGITQYYAFVK--ERQKV 285

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
              + +    Q     ++   +    E L + + E      Y+H+ +    R  +  D R
Sbjct: 286 HCLNTLFAKLQINQ-AIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFR 344

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G    LV  +L   G+DI    +V   D     F ++  + +  IGR+ R  +  + + 
Sbjct: 345 NGACRCLVSSDLFTRGIDIQSVNVVINFD-----FPKNSETYLHRIGRSGRYGHLGLAIN 399

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
             T      L   E     E Q      + I+P
Sbjct: 400 LITFEDRFNLYKIEVELGTEIQ---PIPNEIDP 429


>gi|320163628|gb|EFW40527.1| cytoplasmic DExD/H-box RNA helicase [Capsaspora owczarzaki ATCC
           30864]
          Length = 602

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 68/189 (35%), Gaps = 27/189 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT               ++E+   + + ++ I +    V+   ++         
Sbjct: 395 QVMLYSATFPVSVKDFSDRYLKNAYEINLMEELTLKGITQYYAFVEERQKVH-------- 446

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   + +  E L   + E      Y+H+++    R  +  D R 
Sbjct: 447 CLNTLFSKLQINQSI-IFCNSVQRVELLARKITELGYSCFYIHAKMLQSHRNRVFHDFRR 505

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F ++  + +  IGR+ R  +  + +  
Sbjct: 506 GACRNLVCSDLFTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRYGHLGLAINL 560

Query: 691 DTITKSIQL 699
            T    + L
Sbjct: 561 ITYDDRMNL 569


>gi|301632114|ref|XP_002945136.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Xenopus
           (Silurana) tropicalis]
          Length = 411

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 75/187 (40%), Gaps = 13/187 (6%)

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ-QGLR-IL 586
           SA+P          I +E + RP       VE R      +D    I+   + +GL+   
Sbjct: 138 SASPA----RHPHPITIE-VARPNETAST-VEQRFYSANDDDKRRAIHQVLKTRGLKQAF 191

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           + V +K     L   L    ++   +H +    ER++ +   + G+ D+LV  ++   GL
Sbjct: 192 VFVNSKLGCARLARSLEREGLKTAALHGDKSQDERLKALEAFKQGEVDLLVCTDVAARGL 251

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           DI +   V   D        +    +  IGR  R   + + +   + + +  +A  E   
Sbjct: 252 DIKDVPAVFNFDVPF-----NAEDYVHRIGRTGRAGAAGLAVTLVSNSDTRLVADIEKLI 306

Query: 707 RREKQLE 713
           +++ ++E
Sbjct: 307 KKKIEIE 313


>gi|157826077|ref|YP_001493797.1| ATP-dependent RNA helicase RhlE [Rickettsia akari str. Hartford]
 gi|157800035|gb|ABV75289.1| ATP-dependent RNA helicase RhlE [Rickettsia akari str. Hartford]
          Length = 410

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 76/213 (35%), Gaps = 8/213 (3%)

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L E    L   M  +     ++   +   ++ SAT     +   Q  +   +    G 
Sbjct: 143 TVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSATMPKHIIVVSQKYLNNPVRITVGA 202

Query: 555 VDPPV-EIRSARTQVEDVYDEINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVR 610
            +    EI+     V D      L  Q G R   +++ V TKR A+ L + L   N +  
Sbjct: 203 ANKAAAEIKQESIHVSDKEKFSELTKQLGNREGSVIIFVKTKRSADQLAKMLKYENHKAE 262

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H ++   +R  +I   R     ++V  ++   GLDIP    V   D            
Sbjct: 263 AIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYDLPM--CPEDYLH 320

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            I   GRA    ++   +  D I +    AID 
Sbjct: 321 RIGRTGRAGATGHALSFISPDDIIR--WRAIDR 351


>gi|296237741|ref|XP_002763877.1| PREDICTED: ATP-dependent RNA helicase DDX3Y-like [Callithrix
           jacchus]
          Length = 647

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 62/170 (36%), Gaps = 11/170 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDV-----YDEI 575
              T++ SAT         +  + E I    G V    E I      VED+       +I
Sbjct: 362 VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVIWVEDLDKRSFLLDI 421

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A  +    L+ V TK+ A+ L ++LY        +H +    +R E +R  R G+  +
Sbjct: 422 LGATGRDSLTLVFVETKKGADSLEDFLYHEGHACTSIHGDRSQRDREEALRQFRSGRSPI 481

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 482 LVATAVAARGLDISNVRHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 526


>gi|260592210|ref|ZP_05857668.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
 gi|260535844|gb|EEX18461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
          Length = 573

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 72/183 (39%), Gaps = 23/183 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG- 582
            TI+ SAT    ++E+    +++  +     V  P E      ++  +        + G 
Sbjct: 183 QTIMFSAT-MPKKIEELAKTLLKNPVEIKLAVSKPAE------KIHQMAYVCYETQKMGI 235

Query: 583 ----------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      R+++   +K+  + +   L  ++I    MHS++   +R +I+   + G+
Sbjct: 236 LKDVFKGGNMKRVIIFSGSKQKVKRIAGALSRKHINCGEMHSDLDQEQRNDIMFKFKSGQ 295

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            DVLV  +++  G+DI +  +V   D   +         +  IGR AR  +    +    
Sbjct: 296 VDVLVATDIVSRGIDIDDITMVINYDVPHDV-----EDYVHRIGRTARADHDGTAITLVN 350

Query: 693 ITK 695
              
Sbjct: 351 ADD 353


>gi|255070425|ref|XP_002507294.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
 gi|226522569|gb|ACO68552.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
          Length = 484

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 94/279 (33%), Gaps = 35/279 (12%)

Query: 445 YSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR- 503
              ++    PG     L ++      L           +  +   +  R   L + GF  
Sbjct: 185 LRPHIAVATPGR----LMDHF-----LHCSAVAKCFENVRCLVLDEADR---LLDPGFEA 232

Query: 504 -LPSCMDNRPLRFEEWNCLRPTTIVVSATP-----GSWELEQCQGIIVE--QIIRPTGLV 555
            L + M N P            T++ SAT         EL   + ++ E  +  +  G  
Sbjct: 233 ELQAIMHNLP-------SANRQTLMFSATITKSISAVQELALGKALLFEALKDTQLAGRC 285

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
                  + R +   +   +  A   G R +++   T R  + L E L    I    +H+
Sbjct: 286 KEEYCFIAPRVKEVYLVHILKRAPTWGTRSMIVFAGTVRKCQMLKEILSVLGINCVALHA 345

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
             K   R   +   + G+  +++  ++   GLDIP   +V   D             I  
Sbjct: 346 AKKQARRHASLSRFKSGEIQIMIATDIASRGLDIPTVDMVVNYDVPLI-----PRDYIHR 400

Query: 675 IGRAARNVN-SKVILYADTITKSIQLAIDETTRRREKQL 712
           IGR AR     + I        S+   I++ T R+  +L
Sbjct: 401 IGRTARAGRVGRAITLVTQHDISLVHQIEQLTCRKLVEL 439


>gi|197336247|ref|YP_002156253.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197317737|gb|ACH67184.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 421

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 80/225 (35%), Gaps = 11/225 (4%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
            +  T++ SAT         Q ++   + I+        V  R       +    +    
Sbjct: 191 KQKQTLLFSATFPEEVQTLTQALLNNPVEIQLQSADASTVVQRVLTVNKGEKTSVLAHLI 250

Query: 580 QQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           Q+    + L+ V  K     L + L +R I     H +     R  ++   + G+ DVL+
Sbjct: 251 QKNQWRQALIFVNAKNACNHLADKLAKRGIAAEVFHGDKGQGARTRVLEAFKAGEIDVLI 310

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI +  +V   D       RS    +  IGR+ R     + L         
Sbjct: 311 ATDIAARGLDIEKLPVVINFD-----LPRSPADYMHRIGRSGRAGEVGLALSLIDYEDYH 365

Query: 698 QLAIDETTRRREKQLEHNKKHNI-NPQSVKEKIMEVIDPILLEDA 741
              I E  ++ + +L+  +       + + E ++  I P+   + 
Sbjct: 366 HFKIIE--KKNKIRLDREQVEGFEVNEEITEALLASIKPVAKPEG 408


>gi|4490563|emb|CAB38639.1| RNA helicase [Plasmodium falciparum]
          Length = 180

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 11/158 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEINLA 578
            T++ SAT      E  +  +V  II   G      +D   E+   + + + +   + + 
Sbjct: 29  QTLLFSATMPKKIQEFAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEEFK-LSYLLEVL 87

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            + G  +L+    K+  +D+ EYL  + +    +H  +   ER E I   R GK D+LVG
Sbjct: 88  QKTGPPVLIFCENKKDVDDVHEYLLLKGVNAVAIHGNLGQSERQEAINLFREGKKDILVG 147

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
            ++  +GLD P    V   D  K+       + I  IG
Sbjct: 148 TDVASKGLDFPSIEHVINYDMPKD-----IENYIHRIG 180


>gi|55379328|ref|YP_137178.1| Hef nuclease [Haloarcula marismortui ATCC 43049]
 gi|55232053|gb|AAV47472.1| ATP-dependent RNA helicase homolog eIF-4A [Haloarcula marismortui
           ATCC 43049]
          Length = 852

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 76/180 (42%), Gaps = 19/180 (10%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH-SEVK------TLERIEIIRDLRLG 631
            + G R+++   ++  AE L ++L +     +++  S+          ++ E +   R G
Sbjct: 369 IENGERVIVFTESRDTAETLVDFLSDHFTTQKFVGQSDTDGSEGMTQTQQQETLDRFRNG 428

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YA 690
           +F+VLV  ++  EGLD+PE  LV   +      + +    IQ  GR  R    +V++  A
Sbjct: 429 EFEVLVSTSVAEEGLDVPEVDLVLFYEP-----VPTAIRAIQRKGRTGRQAEGRVVVLLA 483

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
           +              ++R K+  +        +SV  ++   +D   L++   T  +  +
Sbjct: 484 EDTRDEAYFWKARNDQKRMKRELNEL------KSVAGELEARLDQTGLDEYEDTTGTASS 537


>gi|296169013|ref|ZP_06850678.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295896310|gb|EFG75967.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 443

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 7/134 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   I  A  +G   ++   TKR A+ + + L ER  +V  +H ++  + R + ++  R
Sbjct: 251 EMVSRILQAEGRG-ATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQIAREKALKAFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G  DVLV  ++   G+DI +   V             + + +  IGR  R   + + + 
Sbjct: 310 NGDIDVLVATDVAARGIDIDDITHVINY-----QIPEDEQAYVHRIGRTGRAGKTGIAVT 364

Query: 689 YADTITKSIQLAID 702
             D         ID
Sbjct: 365 LVDWDELPRWSMID 378


>gi|183981369|ref|YP_001849660.1| ATP-dependent RNA helicase RhlE [Mycobacterium marinum M]
 gi|183174695|gb|ACC39805.1| ATP-dependent RNA helicase RhlE [Mycobacterium marinum M]
          Length = 517

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   +  A ++G   ++   TKR A+ + + L ER   V  +H ++  + R + ++  R
Sbjct: 258 ELVTRVLQARERG-ATMIFTRTKRTAQKVADELNERGFAVGAVHGDLGQVAREKALKSFR 316

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G  +VLV  ++   G+DI +   V             +   +  IGR  R   + V + 
Sbjct: 317 SGSVNVLVATDVAARGIDIDDVTHVINY-----QCPEDEKMYVHRIGRTGRAGRTGVAVT 371

Query: 689 YADTITKSIQLAID 702
             D         ID
Sbjct: 372 LVDWDELPRWTMID 385


>gi|85705347|ref|ZP_01036446.1| putative ATP-dependent RNA helicase protein [Roseovarius sp. 217]
 gi|85670220|gb|EAQ25082.1| putative ATP-dependent RNA helicase protein [Roseovarius sp. 217]
          Length = 438

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 68/188 (36%), Gaps = 9/188 (4%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQI-IRPTGLVDPPV--EIRSARTQVEDVYDEINLA 578
            T++ SAT P    EL        +++ + P G     V  E+       +       L 
Sbjct: 182 QTMMFSATMPKQMEELAGSYLRNPKRVQVSPPGKAADKVTQEVHFIAKASKPDLLIELLG 241

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             +    L+   TK  ++ L + L +    V  +H      +R   ++  R G+  +LV 
Sbjct: 242 KHKSELALVFGRTKHGSDKLAKRLEQAGFAVATIHGNKSQGQRERALKAFRDGQVKILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT--KS 696
            ++   GLDIP+   V   +        +    I    RA ++  +      D +   K 
Sbjct: 302 TDVAARGLDIPDVKHVYNYELP--NVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGELKD 359

Query: 697 IQLAIDET 704
           IQ  +  T
Sbjct: 360 IQKVLGTT 367


>gi|307203840|gb|EFN82776.1| ATP-dependent RNA helicase abstrakt [Harpegnathos saltator]
          Length = 624

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 80/230 (34%), Gaps = 17/230 (7%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D  H  +  +S            + + GF      D R + F  +   R  T++ SAT
Sbjct: 326 LMDMLHKKMVTLSVCRYLCMDEADRMIDMGFE----EDVRTI-FSFFRGQR-QTLLFSAT 379

Query: 532 PGSWELEQCQGIIVEQIIRPTG-----LVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                    +  +V+ +    G      ++   E+   + Q   +   +    +    +L
Sbjct: 380 MPKRIQNFARSALVKPVTINVGRAGAASMNVIQEVEYVK-QEAKIVYLLECLQKTAPPVL 438

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +    KR  + + EYL  + +    +H  +   ER   +   R G+ DVLV  ++  +GL
Sbjct: 439 IFAEKKRDVDAIHEYLLIKGVEAVAIHGGIDQEERSRSVEAFRGGRKDVLVATDVASKGL 498

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           D  +   V   D           + +  IGR  R+  + +          
Sbjct: 499 DFADVQHVINYD-----MPDDVENYVHRIGRTGRSGRTGIATTFINKAND 543


>gi|254437196|ref|ZP_05050690.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
 gi|198252642|gb|EDY76956.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
          Length = 435

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 72/202 (35%), Gaps = 24/202 (11%)

Query: 524 TTIVVSATPGSWELEQCQGII-------VEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT      E     +       V+   +P   ++  V   +   + + + + I+
Sbjct: 181 QTMLFSATMPKLMAELAGAFLKNPMRVQVDAPGKPVERIEQSVHFVAKAAKTDLLLELID 240

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               +  R ++   TK  +E L + L  +      +H      +R   I D + GK  +L
Sbjct: 241 --KHRDERAIVFGRTKHGSEKLHKLLASKGFLSASIHGNKSQGQRDRAITDFKAGKVKIL 298

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITK 695
           V  ++   GLDIPE   +   D           + +  IGR AR   +   I +      
Sbjct: 299 VATDVAARGLDIPEVKHIYNYD-----LPNVAENYVHRIGRTARAGADGMAIAFC----- 348

Query: 696 SIQLAIDETTRRREKQLEHNKK 717
               A DE    R+ Q      
Sbjct: 349 ----APDEMGELRDIQKAMKAD 366


>gi|158300606|ref|XP_320481.4| AGAP012045-PA [Anopheles gambiae str. PEST]
 gi|157013241|gb|EAA00456.4| AGAP012045-PA [Anopheles gambiae str. PEST]
          Length = 910

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            +I++ V TK+  +DL + +         +H +    ER  +++D R GK  +LV  ++ 
Sbjct: 476 NKIIIFVETKKKVDDLLKNIVRDGYGATSIHGDKSQTERDYVLQDFRHGKSTILVATDVA 535

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             GLD+ +   V   D     +  S    I  IGR  R           T   
Sbjct: 536 ARGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGRCSQYGTAYTFFTPNN 583


>gi|221065648|ref|ZP_03541753.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220710671|gb|EED66039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 473

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 12/182 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-A 579
           T++ SAT            + +    ++ RP       VE R  +   +D    I     
Sbjct: 187 TLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETAST-VEQRFYKVSDDDKRYAIRSVLK 245

Query: 580 QQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++ +R   +   +K     LT  L    +R   +H +    ER++ +   + G+ D+LV 
Sbjct: 246 ERDIRQAFIFSNSKLGCARLTRALERDGLRAGALHGDKSQDERLKALEAFKAGEVDLLVC 305

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI +   V   D        +    +  IGR  R   S + +   T   S  
Sbjct: 306 TDVAARGLDIKDVPAVFNYDVPF-----NAEDYVHRIGRTGRAGASGLAVTLVTDHDSRN 360

Query: 699 LA 700
           +A
Sbjct: 361 VA 362


>gi|26344027|dbj|BAC35670.1| unnamed protein product [Mus musculus]
          Length = 483

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 79/235 (33%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D             L    + + L +     L     + S
Sbjct: 242 MIVLDEADKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 290

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ +      V    ++           + +    Q    I +  
Sbjct: 291 HLQKPYEINLMEELTLKGVTEYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFC 341

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI 
Sbjct: 342 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 401

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 402 AVNVVMNFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 451


>gi|325963995|ref|YP_004241901.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470082|gb|ADX73767.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 564

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 68/183 (37%), Gaps = 16/183 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--------DVY 572
              T++ SAT PG       + +     IR     D  +  R  R  +         +V 
Sbjct: 220 VRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSMDKIEVV 279

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +G R ++   TKR A  + E L +R      +H ++    R + +R  R  K
Sbjct: 280 ARILQAKGRG-RTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNNK 338

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            DVLV  ++   G+D+ +   V          +  +   +  +GR  R  N    + + D
Sbjct: 339 VDVLVATDVAARGIDVDDVTHVINYQC-----VEDEKIYLHRVGRTGRAGNKGTAVTFVD 393

Query: 692 TIT 694
              
Sbjct: 394 WDD 396


>gi|300714781|ref|YP_003739584.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299060617|emb|CAX57724.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 430

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 85/254 (33%), Gaps = 36/254 (14%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNR 511
           L +Y          ++HV +  I  +   +  R   L   GF         R+P+     
Sbjct: 145 LIDY--------TKQNHVNLGAIQVVVLDEADRMFDL---GFIKDIRWLFRRMPAANQRL 193

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            + F      R   +       +  +E   +     +I           ++R  +T +E+
Sbjct: 194 NMLFSATLSFRVRELAFENMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLLEE 253

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                    +   R ++   TK   ED+  +L     RV  +  +V   +R+ I+ D   
Sbjct: 254 ---------EWPDRAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTK 304

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILY 689
           G  D+LV  ++   GL IP    V   D         +   +  IGR  R   N   I  
Sbjct: 305 GDVDILVATDVAARGLHIPAVTHVFNYD-----LPDDREDYVHRIGRTGRAGANGHSISL 359

Query: 690 ADTITKSIQLAIDE 703
           A         AI+E
Sbjct: 360 ACEEYALNLPAIEE 373


>gi|163748720|ref|ZP_02155973.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
 gi|161331830|gb|EDQ02634.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
          Length = 438

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 79/238 (33%), Gaps = 15/238 (6%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D     I  +S +          + + GF      D R L     +      ++ SAT
Sbjct: 145 IIDYVRQGIINLSAIQVVVLDEADRMFDLGFI----KDIRFLFRRMPDAKLRLNMLFSAT 200

Query: 532 PGSWELEQCQGIIVE---QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG--LRIL 586
                 E     + E    +I P       ++       +++    +    ++    + +
Sbjct: 201 LSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPSMDEKMRLLLSLIEEDWPEKAI 260

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +   TK   E++  +L     RV  +  +V   +RI I+     G+ D LV  ++   GL
Sbjct: 261 IFSNTKHSCENVWSWLSGDGHRVGLLTGDVPQKKRIRILEQFTTGELDFLVATDVAARGL 320

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
            I +   V   D             +  IGR  R     V I +A         AI+E
Sbjct: 321 HISDVSHVYNYD-----LPDDCEDYVHRIGRTGRVGKKGVSISFACEEYAMNLPAIEE 373


>gi|109947876|ref|YP_665104.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba]
 gi|109715097|emb|CAK00105.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba]
          Length = 494

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 95/257 (36%), Gaps = 34/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++  D        H  +P++  +   D      + + GF     +D+    F+
Sbjct: 146 TPGRLLDHLKND------RIHKFVPKVVVLDESD-----EMLDMGF-----LDDIEEIFD 189

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVY 572
                    ++ SAT     +++    I+E  I+    P+ + +  +  R       +  
Sbjct: 190 YLPSEA-QILLFSAT-MPEPIKKLADKILENPIKIHIAPSNITNTDITQRFYVINEHERS 247

Query: 573 DEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + I      Q   + ++   TK+ A++L ++L  +N +   +H ++   +R   I   + 
Sbjct: 248 EAIMHLLDTQAPEKSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKK 307

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              DVLV  ++   GLDI     V            +  S I  IGR  R     + +  
Sbjct: 308 NDADVLVATDVASRGLDISGVSHVFNYH-----LPLNTESYIHRIGRTGRAGKKGMAITL 362

Query: 691 DTITK-----SIQLAID 702
            T  +      +Q  ID
Sbjct: 363 VTPLEYKELLRMQKEID 379


>gi|162460883|ref|NP_001105372.1| eukaryotic initiation factor 4A [Zea mays]
 gi|2500522|sp|Q41741|IF4A_MAIZE RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
 gi|603190|gb|AAA82736.1| translation initiation factor eIF-4A [Zea mays]
          Length = 410

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 76/192 (39%), Gaps = 17/192 (8%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V I   
Sbjct: 201 YDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNIDKE 260

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 261 DWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 318

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 319 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 373

Query: 685 KVILYADTITKS 696
            V +   T    
Sbjct: 374 GVAINFVTRDDE 385


>gi|312375424|gb|EFR22803.1| hypothetical protein AND_14200 [Anopheles darlingi]
          Length = 971

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 5/117 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                +I++ V TK+  +DL + +         +H +    ER  +++D R GK  +LV 
Sbjct: 514 TDASNKIIIFVETKKKVDDLLKNIVRDGYGATSIHGDKSQSERDYVLQDFRHGKSTILVA 573

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            ++   GLD+ +   V   D     +  S    I  IGR  R           T   
Sbjct: 574 TDVAARGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGRCSQYGTAYSFFTPNN 625


>gi|311276168|ref|XP_003135076.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Sus
           scrofa]
          Length = 646

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 5/123 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 417 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 476

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV   +   GLDI     V   D             +  IGR  R  N  +       
Sbjct: 477 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLGLATSFFNE 531

Query: 694 TKS 696
             +
Sbjct: 532 RNA 534


>gi|296086337|emb|CBI31778.3| unnamed protein product [Vitis vinifera]
          Length = 568

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 8/122 (6%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +G + ++   TKR A+ L  Y   RN R   +H ++   +R   +   R G F+VLV  
Sbjct: 358 AKGGKCIVFTQTKRDADRLA-YAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVAT 416

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSI 697
           ++   GLDIP   L+            S    +   GR  R       +++YA+   +++
Sbjct: 417 DVAARGLDIPNVDLII-----HYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTV 471

Query: 698 QL 699
           + 
Sbjct: 472 RF 473


>gi|242093508|ref|XP_002437244.1| hypothetical protein SORBIDRAFT_10g023440 [Sorghum bicolor]
 gi|241915467|gb|EER88611.1| hypothetical protein SORBIDRAFT_10g023440 [Sorghum bicolor]
          Length = 567

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 73/204 (35%), Gaps = 22/204 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVE-IRSARTQ---VED 570
              T++ SAT            +         ++   T L++  +E +     +   ++ 
Sbjct: 253 VRQTMLFSATFPPEIQRLASDFLYNYIFVTVGRVGSSTDLIEQKLEFVNDGEKRGFLIDL 312

Query: 571 VYDEINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +  +    A   L+    L+ V TKR A+ L  +L  +      +H +    ER   ++ 
Sbjct: 313 LQKQSAGVANSKLQQPLTLVFVETKREADSLRYFLQSKGFPATAIHGDRTQQERESALKS 372

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + G   ++V  ++   GLD+P    V   D  K     S    +  IGR  R   + + 
Sbjct: 373 FKSGTTPIMVATDVASRGLDVPNVAHVINYDLPK-----SIEDYVHRIGRTGRAGKAGIA 427

Query: 688 L-YADTITKSIQLAIDE--TTRRR 708
             +       +   + E  T  +R
Sbjct: 428 TAFFTESNHPLAKGLLELMTEAKR 451


>gi|74006738|ref|XP_861475.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 9 [Canis familiaris]
          Length = 663

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 492

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 493 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 539


>gi|53719796|ref|YP_108782.1| putative ATP-dependent RNA helicase [Burkholderia pseudomallei
           K96243]
 gi|53724110|ref|YP_103224.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|67639288|ref|ZP_00438162.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
 gi|121599488|ref|YP_993402.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
 gi|124385746|ref|YP_001029162.1| putative ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC
           10229]
 gi|126448376|ref|YP_001080910.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
 gi|166999673|ref|ZP_02265508.1| DEAD/DEAH box helicase [Burkholderia mallei PRL-20]
 gi|167903298|ref|ZP_02490503.1| ATP-dependent RNA helicase [Burkholderia pseudomallei NCTC 13177]
 gi|217421948|ref|ZP_03453452.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
 gi|254177947|ref|ZP_04884602.1| DEAD/DEAH box helicase [Burkholderia mallei ATCC 10399]
 gi|254200174|ref|ZP_04906540.1| DEAD/DEAH box helicase [Burkholderia mallei FMH]
 gi|254206512|ref|ZP_04912864.1| DEAD/DEAH box helicase [Burkholderia mallei JHU]
 gi|254257950|ref|ZP_04949004.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
 gi|254297179|ref|ZP_04964632.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 406e]
 gi|254358076|ref|ZP_04974349.1| DEAD/DEAH box helicase [Burkholderia mallei 2002721280]
 gi|52210210|emb|CAH36189.1| putative ATP-dependent RNA helicase [Burkholderia pseudomallei
           K96243]
 gi|52427533|gb|AAU48126.1| ATP-dependent RNA helicase RhlE, putative [Burkholderia mallei ATCC
           23344]
 gi|121228298|gb|ABM50816.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
 gi|124293766|gb|ABN03035.1| putative ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC
           10229]
 gi|126241246|gb|ABO04339.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
 gi|147749770|gb|EDK56844.1| DEAD/DEAH box helicase [Burkholderia mallei FMH]
 gi|147753955|gb|EDK61020.1| DEAD/DEAH box helicase [Burkholderia mallei JHU]
 gi|148027203|gb|EDK85224.1| DEAD/DEAH box helicase [Burkholderia mallei 2002721280]
 gi|157807478|gb|EDO84648.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 406e]
 gi|160698986|gb|EDP88956.1| DEAD/DEAH box helicase [Burkholderia mallei ATCC 10399]
 gi|217395690|gb|EEC35708.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
 gi|238519823|gb|EEP83289.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
 gi|243064323|gb|EES46509.1| DEAD/DEAH box helicase [Burkholderia mallei PRL-20]
 gi|254216639|gb|EET06023.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
          Length = 516

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I + Q I     +   V     R   + + D + 
Sbjct: 245 QTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLL 304

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                    ++   TK  A+ L   L +   +   +H ++    R   IR LR  +  VL
Sbjct: 305 RDVALDQ-AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVL 363

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 364 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 416

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 417 EQGALKRIER 426


>gi|302345341|ref|YP_003813694.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149991|gb|ADK96253.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 573

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 77/198 (38%), Gaps = 38/198 (19%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQIIRPTGLVDPPVEIR-----SARTQVEDVYDEIN 576
            TI+ SAT P    EL +              L+  PVEI+      A  +++       
Sbjct: 183 QTIMFSATMPAKIEELAKT-------------LLKNPVEIKLAVSKPAE-KIQQTAYVCY 228

Query: 577 LAAQQG-----------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
              + G            R+++   +K+  + +   L   +I    MHS++   +R +++
Sbjct: 229 ETQKMGIIKDIFKAGDLKRVIIFSGSKQKVKQIAGSLNRMHINCGEMHSDLDQEQRNDVM 288

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNS 684
              + G+ DVLV  +++  G+DI +  +V   D             +  IGR AR + + 
Sbjct: 289 FKFKSGQIDVLVATDIVSRGIDIDDIAMVINYDV-----PHDAEDYVHRIGRTARADRDG 343

Query: 685 KVILYADTITKSIQLAID 702
           K I + +         I+
Sbjct: 344 KAITFVNEDDIYFFQQIE 361


>gi|242005222|ref|XP_002423470.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212506558|gb|EEB10732.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 422

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 102/296 (34%), Gaps = 35/296 (11%)

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           R   L E    L    D++     +   L+   ++ SAT     L+Q + ++ + +    
Sbjct: 148 RFLVLDEADRLLSGQFDDQISTIFKSLPLKKQILLFSATIND-TLKQAEELLSKNVFSFI 206

Query: 553 GLVDPPVEIRSAR-------TQVED--VYDEINLAAQQGLR--ILLTVLTKRMAEDLTEY 601
              D    + + +         V+D  + + I L  +      I++   T R  + L+  
Sbjct: 207 DKSD-VATVDNLQQFYVLCPDHVKDAYLVEVIQLYRKNNENGNIIIFTDTCRNCQLLSMT 265

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L E       +HS +K  ER+  +   +      L+  ++   GLDIP   LV       
Sbjct: 266 LNEVGFENVAIHSMMKQKERLAALSRFKSNIVKTLIATDIASRGLDIPTVELVINHS--- 322

Query: 662 EGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
                     I  +GR AR   +   +     +   +  AI+     + K      +++I
Sbjct: 323 --IPNVPKDYIHRVGRTARAGRAGMSVSLVTPVDIKLIHAIESIINTKLK------EYSI 374

Query: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
           N + V +     I   +        I +D           K  +   +K M  AA+
Sbjct: 375 NDKEVIK-----ILTQVKVTKREAEIKLDETDFYE-----KKMINKRKKLMMEAAE 420


>gi|164687290|ref|ZP_02211318.1| hypothetical protein CLOBAR_00931 [Clostridium bartlettii DSM
           16795]
 gi|164603714|gb|EDQ97179.1| hypothetical protein CLOBAR_00931 [Clostridium bartlettii DSM
           16795]
          Length = 480

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 84/219 (38%), Gaps = 10/219 (4%)

Query: 544 IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
           + E+ I    + +  +++     + + + + +     +    ++   TK+ AE L E + 
Sbjct: 205 VDEEEILKNQIEEKYIKVEKQELKYDALKNVLYKF--KPETTIIFTNTKKQAEVLYENMK 262

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
                V  +H ++    R  II   +  +F++L+  +++  G+ I +  LV   D     
Sbjct: 263 SEGFLVEQIHGDISQERRFYIIDSFKKHEFNILISSDIISRGIHIDDVSLVINYD----- 317

Query: 664 FLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAIDE-TTRRRE-KQLEHNKKHNI 720
                   +  IGR  R   + K I             I+  T  + E   +E+ +K  I
Sbjct: 318 IPSDSEIYVHRIGRTGRAGKHGKAISLVSNNECRDFENIEVYTKNKIEPIGIEYCEKDKI 377

Query: 721 NPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
             Q   ++++     +  ++       +    +S+ KKK
Sbjct: 378 EYQKTIKELLNKYALVENQEQDEFKGEVVKIHISIGKKK 416


>gi|162462542|ref|NP_001104874.1| translation initiation factor [Zea mays]
 gi|2286151|gb|AAB64289.1| translation initiation factor [Zea mays]
          Length = 414

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 76/192 (39%), Gaps = 17/192 (8%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 205 YDIFQLLPAKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 264

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 265 DWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 322

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 323 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 377

Query: 685 KVILYADTITKS 696
            V +   T    
Sbjct: 378 GVAINFVTRDDE 389


>gi|311276166|ref|XP_003135075.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Sus
           scrofa]
          Length = 662

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 5/123 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 492

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV   +   GLDI     V   D             +  IGR  R  N  +       
Sbjct: 493 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLGLATSFFNE 547

Query: 694 TKS 696
             +
Sbjct: 548 RNA 550


>gi|240172122|ref|ZP_04750781.1| putative ATP-dependent RNA helicase [Mycobacterium kansasii ATCC
           12478]
          Length = 504

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   I  A  +G   ++   TKR A+ + + L ER   V  +H ++  + R + ++  R
Sbjct: 251 ELVSRILQARDRG-ATMIFTRTKRTAQKVADELKERGFAVGAVHGDLGQIAREKALKAFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G  +VLV  ++   G+DI +   V             +   +  IGR  R   + V + 
Sbjct: 310 GGDVNVLVATDVAARGIDIDDVTHVINY-----QCPEDEKMYVHRIGRTGRAGRTGVAVT 364

Query: 689 YADTITKSIQLAID 702
             D         ID
Sbjct: 365 LVDWDELDRWTTID 378


>gi|219880759|gb|ACL51654.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Callithrix
           jacchus]
          Length = 654

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 62/170 (36%), Gaps = 11/170 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDV-----YDEI 575
              T++ SAT         +  + E I    G V    E I      VED+       +I
Sbjct: 369 VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVIWVEDLDKRSFLLDI 428

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A  +    L+ V TK+ A+ L ++LY        +H +    +R E +R  R G+  +
Sbjct: 429 LGATGRDSLTLVFVETKKGADSLEDFLYHEGHACTSIHGDRSQRDREEALRQFRSGRSPI 488

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 489 LVATAVAARGLDISNVRHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 533


>gi|156085513|ref|XP_001610166.1| ATP-dependent RNA helicase [Babesia bovis T2Bo]
 gi|154797418|gb|EDO06598.1| ATP-dependent RNA helicase, putative [Babesia bovis]
          Length = 433

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 64/195 (32%), Gaps = 28/195 (14%)

Query: 523 PTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
              I+ SAT             P + E+     + ++ I +    V+   +I        
Sbjct: 234 KQMILYSATFPMSVQKFKESYLPNAHEINLMDELTLKGITQYYAYVEERQKIH------- 286

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                +    Q     ++   +    E L + + E      Y+H+ +    R  +  D R
Sbjct: 287 -CLSTLFSRLQINQ-AIIFCNSVSRVELLAKKITELGFSCFYIHARMLQAHRNRVFHDFR 344

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G    LV  +L   G+D     +V   D     F ++  + +  IGR+ R  +    I 
Sbjct: 345 NGACRCLVSSDLFTRGIDFRFVNVVINFD-----FPKTSATYLHRIGRSGRFGHLGLAIN 399

Query: 689 YADTITKSIQLAIDE 703
                 K     I+E
Sbjct: 400 LVTLADKEALFRIEE 414


>gi|118618015|ref|YP_906347.1| ATP-dependent RNA helicase RhlE [Mycobacterium ulcerans Agy99]
 gi|118570125|gb|ABL04876.1| ATP-dependent RNA helicase RhlE [Mycobacterium ulcerans Agy99]
          Length = 517

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   +  A ++G   ++   TKR A+ + + L ER   V  +H ++  + R + ++  R
Sbjct: 258 ELVTRVLQARERG-ATMIFTRTKRTAQKVADELNERGFAVGAVHGDLGQVAREKALKSFR 316

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G  +VLV  ++   G+DI +   V             +   +  IGR  R   + V + 
Sbjct: 317 RGSVNVLVATDVAARGIDIDDVTHVINY-----QCPEDEKMYVHRIGRTGRAGRTGVAVT 371

Query: 689 YADTITKSIQLAID 702
             D         ID
Sbjct: 372 LVDWDELPRWTMID 385


>gi|62740097|gb|AAH94097.1| Unknown (protein for MGC:115016) [Xenopus laevis]
          Length = 695

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 60/170 (35%), Gaps = 11/170 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD------EI 575
              T++ SAT         +  + E I    G V    E  + +    +  D      ++
Sbjct: 414 VRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDL 473

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +
Sbjct: 474 LNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 533

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 534 LVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 578


>gi|329891295|ref|ZP_08269638.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
 gi|328846596|gb|EGF96160.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
          Length = 589

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 38/230 (16%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           +   +  SAT    E+ +  G +++  ++        V++    T VE +   +    +Q
Sbjct: 182 KRQNLFFSAT-MPSEIGKLAGELLKDPVK--------VQVTPQATTVERIKQSVI-WVEQ 231

Query: 582 GL---------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           G                R L+   TK  A+ +  YL    +    +H      +R   + 
Sbjct: 232 GKKRALLTELFSDPAYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERALE 291

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK- 685
             + GK  VLV  ++   G+D+ +   V   +           + +  IGR AR      
Sbjct: 292 AFKNGKLRVLVATDIAARGIDVDKVTHVVNFE-----LPYVPEAYVHRIGRTARAGKDGT 346

Query: 686 VILYADTITKSIQLAIDETTR-------RREKQLEHNKKHNINPQSVKEK 728
            I +       +   I++ TR       RR  +       +I    V +K
Sbjct: 347 AISFVAGDEMKLLKDIEKVTRQKIPAIDRRNDKALAQLDASIMSAGVAKK 396


>gi|307721994|ref|YP_003893134.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM
           16294]
 gi|306980087|gb|ADN10122.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM
           16294]
          Length = 452

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 11/175 (6%)

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPV-EIRSARTQVEDVYD 573
           +      T++ SAT     L+  + I    +        + +  V E      +V+ +  
Sbjct: 171 FVPKERQTLLFSATYDDEILQISKRIQNNALHVKTAAQEVQNKIVQEFYETNDKVDTLIK 230

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +     +   +++   TK  A++L E L +  I    +H +++  ER +++        
Sbjct: 231 ILANY--KPENVIVFTNTKLEAKELAESLVQNKIDALAIHGDLEQYERNDVLVQFANKSC 288

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            VLV  ++   GLDI +  +V   D        S  +    IGR  R     + +
Sbjct: 289 PVLVATDVAARGLDIKDLSMVVNYD-----LPHSMETYTHRIGRTGRAGAEGIAV 338


>gi|164659183|ref|XP_001730716.1| hypothetical protein MGL_2170 [Malassezia globosa CBS 7966]
 gi|159104613|gb|EDP43502.1| hypothetical protein MGL_2170 [Malassezia globosa CBS 7966]
          Length = 502

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 83/243 (34%), Gaps = 26/243 (10%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E+     + +  + +    V+   ++           + +    Q    I +   +  
Sbjct: 228 PYEINLMDELTLRGVTQYYAFVEERQKVH--------CLNTLFSKLQINQSI-IFCNSTN 278

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L + + E      Y H+++    R  +  D R G    LV  +LL  G+DI    +
Sbjct: 279 RVELLAKKITELGYSCFYSHAKMLQAHRNRVFHDFRNGACRNLVCSDLLTRGIDIQAVNV 338

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           V   D     F ++  + +  IGR+ R  +  + +   T      L        R +Q  
Sbjct: 339 VINFD-----FPKNAETYLHRIGRSGRFGHMGLAINLITYEDRFNL-------YRIEQEL 386

Query: 714 HNKKHNINPQSVKEKI---MEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQ 770
             +   I P ++ +++     +I      +          Q  S+ ++   A +   +  
Sbjct: 387 GTEVQPI-PATIDKRLYVAPSLIQEAENRERDAQEQGKPTQGPSIMQQGLPA-IPPTQAA 444

Query: 771 MHL 773
           MH 
Sbjct: 445 MHA 447


>gi|170575198|ref|XP_001893141.1| DEAD/DEAH box helicase family protein [Brugia malayi]
 gi|158601006|gb|EDP38026.1| DEAD/DEAH box helicase family protein [Brugia malayi]
          Length = 830

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 68/179 (37%), Gaps = 18/179 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE---------QIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT  S   E    ++ E          I     +    +E+ S   + + +   
Sbjct: 609 QTLLFSATITSEVKELAAKVLKENHAFVSNGKTISANPLVEQNFIEVTS-ENKFDKLIQL 667

Query: 575 INLAAQQG---LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           +    +      R L+ V  K+MA+ +   L ++NI+   +  +    +R E + D R G
Sbjct: 668 LEEDREHNGDVARTLVFVQRKQMADVIALNLIQKNIQSSSISGDRMQKQREEALSDFRKG 727

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              VLV  ++   G+D+ +   V   D         + + +  IGR  R    K   + 
Sbjct: 728 NIKVLVATDVCARGIDVKDLQHVINYD-----MPSDRVTYVHRIGRTGRLHRGKATSFI 781


>gi|120402790|ref|YP_952619.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955608|gb|ABM12613.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii
           PYR-1]
          Length = 494

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 7/134 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   I  A  +G   ++   TKR A+ + + L ER  +V  +H ++    R + ++  R
Sbjct: 250 EMVARILQAEGRG-ATMIFTRTKRTAQKVADELGERGFKVGAVHGDLGQAAREKALKSFR 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G+ DVLV  ++   G+DI +   V             + + +  IGR  R   + + + 
Sbjct: 309 TGEVDVLVATDVAARGIDIDDITHVINF-----QIPEDEQAYVHRIGRTGRAGKTGIAVT 363

Query: 689 YADTITKSIQLAID 702
             D         ID
Sbjct: 364 LVDWDELPRWSMID 377


>gi|74006744|ref|XP_861568.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 12 [Canis familiaris]
          Length = 653

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 424 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 483

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 484 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 530


>gi|324507413|gb|ADY43143.1| ATP-dependent RNA helicase DDX17 [Ascaris suum]
          Length = 492

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 14/160 (8%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++         VE    + ++  +  +I    +   + L+ V TKR A+
Sbjct: 269 LELAANHNITQVV-------EVVEEYQKQGRMMTLLTDIMNQPEC--KTLVFVETKRKAD 319

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           DLT  +         +H +    ER  ++ + + GK  +L+  ++   GLD+ +   V  
Sbjct: 320 DLTRSMRRDGWPTLCIHGDKNQGERDWVLSEFKSGKTPILLATDVAARGLDVDDIKFVIN 379

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            D     +  +    +  IGR AR           T + +
Sbjct: 380 YD-----YPNNSEDYVHRIGRTARCEKKGTAYTFFTPSNA 414


>gi|227499384|ref|ZP_03929495.1| ATP-dependent RNA helicase [Anaerococcus tetradius ATCC 35098]
 gi|227218446|gb|EEI83689.1| ATP-dependent RNA helicase [Anaerococcus tetradius ATCC 35098]
          Length = 553

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 98/269 (36%), Gaps = 45/269 (16%)

Query: 524 TTIVVSATPGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            T   SAT G    E     Q    + +I+   +    ++    + +     + +    +
Sbjct: 190 QTCFFSATMGKEFAEFSKLYQNNPQKIVIKADEVTVEKIDQYYIKLKEAMKEETLTRLLE 249

Query: 581 QGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                  ++   TKR  + L E L +++  V  +H ++K   R ++++  R     +L+ 
Sbjct: 250 INNPKLAIVFCNTKRKVDKLVEELTKKSYLVDGLHGDLKQSARDQVMKKFRNKTIQILIA 309

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI +  LV   D       +     +  IGR AR   S V            
Sbjct: 310 TDVAARGLDIDDVDLVINYD-----LPQLDEYYVHRIGRTARAGKSGVSYSL-------- 356

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
             I    R R + +E         +  K  I E+  P L++               + +K
Sbjct: 357 --IAGRDRDRLRAIE---------KYTKADIKEIPIPSLIQ---------------MDRK 390

Query: 759 KGKAHLKSLRKQMHLAADNLNFEEAARIR 787
                +++L ++   A+  L+ E+A  IR
Sbjct: 391 SENNLIENLSEK-LEASPKLDREKAILIR 418


>gi|297201135|ref|ZP_06918532.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|197713661|gb|EDY57695.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 504

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 7/135 (5%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +D +      A +  R+++ + TK  AE L ++L    +R   +H      +R   +   
Sbjct: 305 DDKHATATEIAARDGRVIMFLDTKHAAERLAKHLLSVGVRASALHGGKSQPQRTRTLGQF 364

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G+  VLV  N+   G+ + +  LV   D   +         +   GR AR   S  ++
Sbjct: 365 KDGQVTVLVATNVAARGIHVDDVDLVVNFDPPAD-----HKDYLHRGGRTARAGESGTVV 419

Query: 689 YADTITKSIQLAIDE 703
                 +  + ++D 
Sbjct: 420 TLVLPHQ--RRSVDR 432


>gi|197692141|dbj|BAG70034.1| ATP-dependent RNA helicase DDX3X [Homo sapiens]
 gi|197692387|dbj|BAG70157.1| ATP-dependent RNA helicase DDX3X [Homo sapiens]
          Length = 662

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 492

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 493 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 539


>gi|166365637|ref|YP_001657910.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
 gi|166088010|dbj|BAG02718.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
          Length = 479

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
              ++ V TK+ A +LT  L E    V   H  +  ++R  +++  R GK  ++V  ++ 
Sbjct: 243 ESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIA 302

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D        +  + I  IGR  R   +   I   + I + +   I
Sbjct: 303 ARGLDVENLSHVINYD-----LPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQI 357

Query: 702 DETTRRR 708
           ++  R+R
Sbjct: 358 EQRLRQR 364


>gi|76809038|ref|YP_334004.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
 gi|76578491|gb|ABA47966.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
          Length = 529

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I + Q I     +   V     R   + + D + 
Sbjct: 258 QTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLL 317

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                    ++   TK  A+ L   L +   +   +H ++    R   IR LR  +  VL
Sbjct: 318 RDVALDQ-AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVL 376

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 377 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 429

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 430 EQGALKRIER 439


>gi|15896262|ref|NP_349611.1| ATP-dependent RNA [Clostridium acetobutylicum ATCC 824]
 gi|15026068|gb|AAK80951.1|AE007798_3 ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis
           ortholog [Clostridium acetobutylicum ATCC 824]
 gi|325510417|gb|ADZ22053.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
           acetobutylicum EA 2018]
          Length = 528

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 98/270 (36%), Gaps = 40/270 (14%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVE----QIIRPTGLVDPPV----EIRSARTQVEDVYDE 574
            T++ SAT P   +      +  E     II+ +  V+       E++  + + E +   
Sbjct: 181 QTMLFSATMPAPIKKLASNYMKKEVKHIAIIKNSLTVERIQQFYFEVK-NKDKFEALCRI 239

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I+   ++    ++   TKR  ++L E +  R   V  MH ++   +RI  ++  +    D
Sbjct: 240 ID--VEEPETTIIFCRTKRGVDELVESMQFRGYNVEGMHGDMSQNQRINTLKKFKENNID 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT-- 692
            LV  ++   G+D+     V   D       +   S +  IGR  R     +     T  
Sbjct: 298 FLVATDVAARGIDVHNVSHVINYD-----IPQDMESYVHRIGRTGRANAEGIAYSLVTPR 352

Query: 693 ---ITKSIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
              + K I+       RR+E        + ++N        ++ +KI + I+    +   
Sbjct: 353 EYVMIKQIEKFTKSKIRRKEIPTIDDIFETKYN--------TLTDKITKNIEKDDFKKYI 404

Query: 743 TTNISIDAQQLSLS-KKKGKAHLKSLRKQM 771
                +D +   +         +    K+M
Sbjct: 405 PFVQKLDDEFNLVDVSAALVKMIFD--KEM 432


>gi|237833961|ref|XP_002366278.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211963942|gb|EEA99137.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221486500|gb|EEE24761.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
 gi|221508269|gb|EEE33856.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 734

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 14/176 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIR---SARTQVEDVYDEIN 576
            T++ SAT    E++      +E  I       G  +  +  R   +   Q   +  ++ 
Sbjct: 448 QTVMFSAT-FPREIQMLAKDFLEDYIYLAVGRVGSTNEFIRQRLQYADEDQKLKLLVKLL 506

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              ++GL  ++ V TKR A+ + +YL + +     +H +    ER E +R  +  K  +L
Sbjct: 507 RETEKGL-TIIFVETKRKADMIEDYLVDDDFPAVSIHGDRTQQEREEALRLFKAAKCPIL 565

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           V  ++   GLDI     V   D        +    +  IGR  R  N  +      
Sbjct: 566 VATDVAARGLDISNVTHVINFD-----LPTNIDDYVHRIGRTGRAGNLGLATSFVN 616


>gi|254363222|ref|ZP_04979270.1| ATP-dependent RNA helicase [Mannheimia haemolytica PHL213]
 gi|153095119|gb|EDN75666.1| ATP-dependent RNA helicase [Mannheimia haemolytica PHL213]
          Length = 444

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 88/257 (34%), Gaps = 28/257 (10%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           +L  DE+   +    G        +    ++ + L S      L  +    L    I V 
Sbjct: 154 VLIFDEADRMLQMGFGQDAEKIAAETRWRKHTW-LFSATLEGELLEDFAERLLNDPIKVD 212

Query: 530 ATPGSWELEQCQGIIVEQ--IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
           A P   E ++ Q        +   T L+   +   S                    R ++
Sbjct: 213 AEPSRRERKKIQQWYYHADNVEHKTKLLARIISEFSV------------------ERAIV 254

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
            V  +    +L+E L +R IR  Y+  E+   +R + I  L+ G  +VLV  ++   G+D
Sbjct: 255 FVRRREDVRELSETLRKRGIRSTYLEGEMAQTQRNQAINRLKEGVVNVLVATDVAARGID 314

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
           I +   V   D        S  + +  IGR AR       +            + +  R 
Sbjct: 315 IDDIDFVLNYD-----LPYSADTYLHRIGRTARAGKKGSAISLVEAHD--YKLLGKIKRY 367

Query: 708 REKQLEHNKKHNINPQS 724
            E+ L+      + P++
Sbjct: 368 TEEVLKPRIIEGLEPRT 384


>gi|108759595|ref|YP_632093.1| RNA helicase DeaD [Myxococcus xanthus DK 1622]
 gi|108463475|gb|ABF88660.1| RNA helicase DeaD [Myxococcus xanthus DK 1622]
          Length = 602

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 67/194 (34%), Gaps = 14/194 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
            T + SAT         +  + E    +I R          +R     V   +    L  
Sbjct: 222 QTALFSATLPPRIASIAERHLHEPVRVKIAREKVEQGEIPRVRQTAYVVPRAFKIATLGR 281

Query: 579 ---AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +     ++   T+   +DLT  L  R  R   +H  +   +R  +I+ L+    D+
Sbjct: 282 LLDVESPTAAIIFCRTRTEVDDLTVSLNGRGWRAHALHGGMTQEQRDRVIKQLKSQGTDL 341

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLDIP    V   D        +  + +  IGR  R     V I   +   
Sbjct: 342 LVATDVAARGLDIPRLSHVVNFDV-----PNAPEAYVHRIGRTGRAGREGVAITLVEPRE 396

Query: 695 KSIQLAIDETTRRR 708
             +   I+  T +R
Sbjct: 397 HRLLRNIERVTGQR 410


>gi|325920710|ref|ZP_08182616.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
 gi|325548762|gb|EGD19710.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
          Length = 643

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     K +  +I+ 
Sbjct: 311 GLDVERVSHVLNYD-----IPYDTESYVHRIGRTGRAGRTGDAILFVTPREKGMLRSIER 365

Query: 704 TTRR 707
            TR+
Sbjct: 366 ATRQ 369


>gi|317496128|ref|ZP_07954488.1| type III restriction enzyme [Gemella moribillum M424]
 gi|316913703|gb|EFV35189.1| type III restriction enzyme [Gemella moribillum M424]
          Length = 512

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 94/194 (48%), Gaps = 19/194 (9%)

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-------EDVYDEINLA 578
           + +SATP   ++++    I++  IR  G + P  +I+  +++V       + +   I   
Sbjct: 312 VFLSATPSD-KVKKLVDEIIKIPIRFHGYLLPIPKIKIEQSKVFTYEKKSQYITQFITQR 370

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYER---NIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +   R+L+   T  M++ L  YL +    N+ + +++SE    +R E +   +  + D+
Sbjct: 371 LELARRLLIFAPTIAMSKSLKLYLEKSLVDNVIIDFVYSE--DEKRQEKVEKFKKWEIDI 428

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV---NSKVILYADT 692
           L+   +L  G+       V + +++ + F  +K +LIQ  GR  R     + +++  AD 
Sbjct: 429 LITTTILERGVTFDYLD-VLVFESNHKIF--TKEALIQIAGRVGRKEYDYSGEIVFLADK 485

Query: 693 ITKSIQLAIDETTR 706
           I K+++LAI E   
Sbjct: 486 INKNMKLAIKEINY 499


>gi|301171475|ref|NP_001180346.1| ATP-dependent RNA helicase DDX3X isoform 3 [Homo sapiens]
 gi|296235291|ref|XP_002762846.1| PREDICTED: ATP-dependent RNA helicase DDX3X isoform 2 [Callithrix
           jacchus]
 gi|297709770|ref|XP_002831597.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Pongo
           abelii]
 gi|194388152|dbj|BAG65460.1| unnamed protein product [Homo sapiens]
          Length = 646

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 417 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 476

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 477 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 523


>gi|156380897|ref|XP_001632003.1| predicted protein [Nematostella vectensis]
 gi|156219053|gb|EDO39940.1| predicted protein [Nematostella vectensis]
          Length = 432

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 72/218 (33%), Gaps = 30/218 (13%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E+     + +  + +    V+   ++           + +    Q    I +   + +
Sbjct: 245 PYEINLMDELTLHGVTQYYAFVEEKQKVH--------CLNTLFQKLQINQSI-IFCNSVQ 295

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L   + E      Y+H+ +    R  +  D R G    LV  +L   G+DI    +
Sbjct: 296 RVELLARKILELGFSCFYIHARMSQSHRNRVFHDFRQGHCRNLVCSDLFTRGIDIQSVNV 355

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           V   D     F ++  + +  IGR+ R  +  V +   T      L              
Sbjct: 356 VINFD-----FPKNSETYLHRIGRSGRFGHLGVAINLITYDDRFDL-------------- 396

Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
           +  ++ ++  +  + I  VID  +           D +
Sbjct: 397 YKIENELD--TEIKPIPSVIDKKVYVAEFQQQQPDDEE 432


>gi|118594179|ref|ZP_01551526.1| putative ATP-dependent RNA helicase protein [Methylophilales
           bacterium HTCC2181]
 gi|118439957|gb|EAV46584.1| putative ATP-dependent RNA helicase protein [Methylophilales
           bacterium HTCC2181]
          Length = 427

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 13/184 (7%)

Query: 520 CLRPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE--IRSARTQVEDVYDE 574
             +   ++ SAT   P     ++     V   I+P       ++  I  A  Q       
Sbjct: 175 SKKQQMLMFSATFDPPIQKIAQEFLTNPVTISIKPDVSGHKNIKQLIYFADNQSHK-QQM 233

Query: 575 INLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++   +     + ++   TKRMA+ L++ LY  +I+   +H ++    R + I   +  +
Sbjct: 234 LDHFIKNDEVTQAIIFTATKRMADQLSDQLYHSDIKTSALHGDMSQGSRTKTINRFKRNE 293

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             +LV  +L   G+D+     V   D  +          I  IGR  R  N  + +   +
Sbjct: 294 TKILVATDLASRGIDVKNISHVFNYDMPRF-----AEDYIHRIGRTGRANNKGIAISLVS 348

Query: 693 ITKS 696
            T  
Sbjct: 349 PTDR 352


>gi|6753620|ref|NP_034158.1| ATP-dependent RNA helicase DDX3X [Mus musculus]
 gi|2500528|sp|Q62167|DDX3X_MOUSE RecName: Full=ATP-dependent RNA helicase DDX3X; AltName:
           Full=D1Pas1-related sequence 2; AltName: Full=DEAD box
           RNA helicase DEAD3; Short=mDEAD3; AltName: Full=DEAD box
           protein 3, X-chromosomal; AltName: Full=Embryonic RNA
           helicase
 gi|407996|gb|AAA53630.1| RNA helicase [Mus musculus]
 gi|1835122|emb|CAA86261.1| dead-box RNA helicase [Mus musculus]
 gi|74187753|dbj|BAE24540.1| unnamed protein product [Mus musculus]
 gi|74190343|dbj|BAE37257.1| unnamed protein product [Mus musculus]
 gi|123858229|emb|CAM15722.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Mus
           musculus]
 gi|1098036|prf||2115205A RNA helicase
          Length = 662

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 492

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 493 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 539


>gi|256829787|ref|YP_003158515.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578963|gb|ACU90099.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 545

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 74/204 (36%), Gaps = 28/204 (13%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++  +   I    Q+  RIL+   T+  A  LT+ L    I V  +H       R   
Sbjct: 227 DNKLPLLLHLIE--KQKQDRILVFARTRTWANRLTDKLAAHGISVAALHGSKSQSLRKRT 284

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + + GK  +LV  ++   GLDI    LV   D        S    +  IGR  R   S
Sbjct: 285 LEEFKDGKIHILVATDVAARGLDISNLPLVVNYD-----IPNSPEDYVHRIGRTGRAGVS 339

Query: 685 KV-ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743
            + +       +++ LAI++  R           H I  ++VK            ED+  
Sbjct: 340 GIAVSLVSPEERNLLLAIEDLLR-----------HQIPVEAVK---------GFTEDSDV 379

Query: 744 TNISIDAQQLSLSKKKGKAHLKSL 767
            +  +       S++     +K L
Sbjct: 380 PDFVLYRPGNPKSERNAPRAIKEL 403


>gi|323340095|ref|ZP_08080360.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
 gi|323092472|gb|EFZ35079.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
          Length = 506

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 94/255 (36%), Gaps = 14/255 (5%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQI--IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT P +      + +   Q+  I+   L    V+   +++   +  D+   I  
Sbjct: 185 QTLLFSATMPKAIRSIGEKFMHEPQVVKIKAKELTTDLVDQYFVKAREYEKFDIMTRILD 244

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L++ L  R      +H ++    R+ I++  + G+ D+LV
Sbjct: 245 -VQAPELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLTQQRRMNILKKFKEGRLDILV 303

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R  +  + + +       
Sbjct: 304 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGHHGISVTFVTPNEME 358

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
               I+  T++R + L    +       +   + ++ D +   +        +       
Sbjct: 359 YLRVIERLTKKRMEPLRPPTEKEAFIGQISSALGDIKDLVEKTETEKYEKQANELLEQYD 418

Query: 757 KKKG-KAHLKSLRKQ 770
             +   A L  + K 
Sbjct: 419 AVELVAALLNEMTKD 433


>gi|195021969|ref|XP_001985492.1| GH14471 [Drosophila grimshawi]
 gi|193898974|gb|EDV97840.1| GH14471 [Drosophila grimshawi]
          Length = 603

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 16/196 (8%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G   VL+   L+  
Sbjct: 372 VLVFVQSKERAKQLFEELLYDGINVDVIHAERTQHQRDNCVRAFREGHIWVLICTELMGR 431

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+D     LV   D     F  +  S I  IGR  R       +   T   +  L     
Sbjct: 432 GIDFKGVNLVINYD-----FPPTTISYIHRIGRTGRAGRPGRAITFFTQDDTANL----- 481

Query: 705 TRRREKQLEHNKKHNINPQSV--KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK- 761
             R   Q+  N      P+ +   +K+ +    +  +            +  + K   + 
Sbjct: 482 --RSVAQIIRNSG-GKVPEYMLQMKKVRKSEAKVRAKKPLEREDISTKIRPEIPKNFVQL 538

Query: 762 AHLKSLRKQMHLAADN 777
             ++   K +   A  
Sbjct: 539 QKVEKTEKVLKQQAKA 554


>gi|41054055|ref|NP_956176.1| probable ATP-dependent RNA helicase DDX23 [Danio rerio]
 gi|38014376|gb|AAH60524.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Danio rerio]
          Length = 807

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 77/203 (37%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 578 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVILMSEGE 637

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + + + +    +    I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 638 KRKKLLEVLASGFEPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 695

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 696 NLKAGAKDILVATDVAGRGIDIQDVSMVLNYDMAK-----NIEDYIHRIGRTGRAGKSGV 750

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 751 AMTFLTKEDSSVFYDLKQAILES 773


>gi|126439983|ref|YP_001059500.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
 gi|126219476|gb|ABN82982.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
          Length = 514

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I + Q I     +   V     R   + + D + 
Sbjct: 244 QTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLL 303

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                    ++   TK  A+ L   L +   +   +H ++    R   IR LR  +  VL
Sbjct: 304 RDVALDQ-AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVL 362

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 363 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 415

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 416 EQGALKRIER 425


>gi|291615697|ref|YP_003518439.1| RhlB [Pantoea ananatis LMG 20103]
 gi|291150727|gb|ADD75311.1| RhlB [Pantoea ananatis LMG 20103]
 gi|327395962|dbj|BAK13384.1| ATP-dependent RNA helicase RhlB [Pantoea ananatis AJ13355]
          Length = 430

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 82/238 (34%), Gaps = 41/238 (17%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNR 511
           L +Y          ++HV +  I  M   +  R   L   GF         R+P+     
Sbjct: 145 LIDY--------AKQNHVNLGAIQVMVLDEADRMFDL---GFIKDIRWLFRRMPAATQRL 193

Query: 512 PLRFEEWNCLRPTTI----VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
            + F      R   +    + SA     E EQ  G    +I           ++R  +T 
Sbjct: 194 SMLFSATLSYRVRELAFEHMNSAEYVEVEPEQKTG---HRIKEELFYPSNEEKMRLLQTL 250

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           VE+         +   R ++   TK   ED+  +L     RV  +  +V   +R+ I+ D
Sbjct: 251 VEE---------EWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDD 301

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              G  D+LV  ++   GL IP    V   D         +   +  IGR  R   S 
Sbjct: 302 FTKGDIDILVATDVAARGLHIPAVTHVFNYD-----LPDDREDYVHRIGRTGRAGASG 354


>gi|255578793|ref|XP_002530253.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223530219|gb|EEF32123.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 1173

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 90/266 (33%), Gaps = 25/266 (9%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDP----PVEIRSARTQVEDVYDEIN 576
            T++ SAT P   E+   +     VE  +    +V+      VE+R    +   + + + 
Sbjct: 710 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESERFLRLLELLG 769

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              ++G +IL+ V ++   + L   L +       +H      +R   I D +    ++L
Sbjct: 770 EWNEKG-KILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLL 828

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ E  LV   D             +  +GR  R       +   +   +
Sbjct: 829 IATSIAARGLDVKELDLVVNFDV-----PNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 883

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
            + A D                 + P+ +K      +  +                   +
Sbjct: 884 -RYAPDLVK-------ALELSEQVVPEDLKALADGFMVKVNQGLEQAHGTGYGGSGFKFN 935

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEE 782
           +++ +  + + + Q    A    FEE
Sbjct: 936 EEEDEKRIAAKKAQ----AKEYGFEE 957


>gi|145301126|ref|YP_001143967.1| ATP-dependent RNA helicase RhlB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|189040025|sp|A4STJ7|RHLB_AERS4 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|142853898|gb|ABO92219.1| ATP-dependent RNA helicase RhlB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 429

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++   TK + ED+  +L     RV  +  +V   +R++I+ D   G  D+LV  ++ 
Sbjct: 257 EKAIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKGTLDILVATDVA 316

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAI 701
             GL IP+   V   D             +  IGR  R   S   I  A         AI
Sbjct: 317 ARGLHIPDVTHVFNYD-----LPDDAEDYVHRIGRTGRAGKSGHSISLACEDYAFNLPAI 371

Query: 702 DE 703
           +E
Sbjct: 372 EE 373


>gi|114049936|emb|CAK50953.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens]
 gi|114050158|emb|CAK51191.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens]
          Length = 499

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 21/159 (13%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D +      A +  R+L+ + TK   + LTE+L    +R   +H      +R   +   +
Sbjct: 296 DKHAATTEIAARDGRVLMFLDTKHAVDRLTEHLLNSGVRAAALHGGKSQPQRTRTLTQFK 355

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ +    LV  +D             +   GR AR   S  ++ 
Sbjct: 356 DGHVSVLVATNVAARGIHVDSLDLVVNVDP-----PTDHKDYLHRGGRTARAGESGSVVT 410

Query: 690 ADTITKSIQLAIDETTRRR--EKQLEHNKKHNINPQSVK 726
             T             +RR   + +       I PQ+ +
Sbjct: 411 LVTP-----------NQRRGMTRLMA---TAGIVPQTTQ 435


>gi|53804102|ref|YP_114024.1| DEAD-box ATP dependent DNA helicase [Methylococcus capsulatus str.
           Bath]
 gi|53757863|gb|AAU92154.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Methylococcus
           capsulatus str. Bath]
          Length = 499

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 8/186 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK + E+L E L  R      ++ ++    R + +  L+    D+LV  ++   
Sbjct: 170 MIIFVRTKVLTEELAEKLEARGYSAAALNGDMSQALREKAVDRLKKNTLDILVATDVAAR 229

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R       IL+     K +  AI++
Sbjct: 230 GLDVERISHVVNYD-----IPYDTESYVHRIGRTGRAGRKGQAILFVTPREKRMLSAIEK 284

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA--TTNISIDAQQLSLSKKKGK 761
            TR+R  ++      +I  + V++   +++  +  ED       +    ++ SLS     
Sbjct: 285 ATRQRITEMRLPTHQDIAERRVEQFKAQIMTTLEEEDLEFFRRLVQQIGREQSLSPTDIA 344

Query: 762 AHLKSL 767
           A L  L
Sbjct: 345 AALTYL 350


>gi|156119497|ref|NP_001095245.1| putative ATP-dependent RNA helicase an3 [Xenopus laevis]
 gi|113825|sp|P24346|DDX3_XENLA RecName: Full=Putative ATP-dependent RNA helicase an3
 gi|65060|emb|CAA40605.1| ATP dependent RNA helicase [Xenopus laevis]
          Length = 697

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 60/170 (35%), Gaps = 11/170 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD------EI 575
              T++ SAT         +  + E I    G V    E  + +    +  D      ++
Sbjct: 416 VRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDL 475

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +
Sbjct: 476 LNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 535

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 536 LVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 580


>gi|71659539|ref|XP_821491.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70886872|gb|EAN99640.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 595

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 72/213 (33%), Gaps = 35/213 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTG-----LVDPPVEIRSARTQVEDVYDEINL- 577
            T++ SAT    E+++      +  IR        L +  V      TQ     +E+   
Sbjct: 291 QTLMFSAT-WPKEIQRLAAEFQKDWIRINVGSTELLANKDVTQHFILTQEHAKMEELKKL 349

Query: 578 -AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            A  +  R+L+   TKR A+DL   L         +H + +  +R  I+   R      L
Sbjct: 350 LANHRNQRVLIFCKTKRTADDLEWQLKRWGYDAMAIHGDKEQRQREFILERFRKDPRLCL 409

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLDI E   V   D     F       +  IGR  R           T    
Sbjct: 410 VATDVAARGLDIKELETVINYD-----FPMQIDDYVHRIGRTGRAGAKGEAFTLIT---- 460

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
                     +RE+Q        I P  V E I
Sbjct: 461 ----------KREQQ--------ITPAVVTELI 475


>gi|315047704|ref|XP_003173227.1| ATP-dependent RNA helicase DHH1 [Arthroderma gypseum CBS 118893]
 gi|311343613|gb|EFR02816.1| ATP-dependent RNA helicase DHH1 [Arthroderma gypseum CBS 118893]
          Length = 508

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 74/232 (31%), Gaps = 32/232 (13%)

Query: 518 WNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           ++      ++ SAT P              +E+     + +  I +    V+   ++   
Sbjct: 216 FHPKDRQVMLFSATFPIIVKTFKDKHMRNPYEINLMDELTLRGITQYYAFVEERQKVH-- 273

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
                   + +    Q    I +   +    E L + + E      Y H+ +    R  +
Sbjct: 274 ------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRV 326

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
             D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  + 
Sbjct: 327 FHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGHL 381

Query: 685 KVILYADTITKSIQLAIDETTRRREKQ-----LEHNKKHNINPQSVKEKIME 731
            + +          L   E     E Q     ++        P ++   I  
Sbjct: 382 GLAINLINWDDRYNLYKIEQELGTEIQPIPPSIDKKLYVYDTPNTIPRPISN 433


>gi|74006746|ref|XP_861599.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 13 [Canis familiaris]
          Length = 656

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 427 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 486

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 487 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 533


>gi|56418761|ref|YP_146079.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
 gi|81675946|sp|Q5L3G9|CSHA_GEOKA RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|56378603|dbj|BAD74511.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
          Length = 467

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 77/201 (38%), Gaps = 21/201 (10%)

Query: 524 TTIVVSAT-PGS---------WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
            T++ SAT P            E E  +    E  +         V  +     +  + D
Sbjct: 177 QTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLD 236

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                 Q     ++   TKR  ++L E L  R      +H ++   +R+ ++R  + G  
Sbjct: 237 -----IQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAI 291

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           ++LV  ++   GLDI     V   D       +   S +  IGR  R   + V +   T 
Sbjct: 292 EILVATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKTGVAMTFVTP 346

Query: 694 TKSIQ-LAIDETTRRREKQLE 713
            +  Q   I+ TT+R+ ++++
Sbjct: 347 REIGQLHHIERTTKRKMERMK 367


>gi|20373098|dbj|BAB91216.1| RNA helicase [Mesocricetus auratus]
          Length = 662

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 492

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 493 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 539


>gi|66810480|ref|XP_638950.1| hypothetical protein DDB_G0283661 [Dictyostelium discoideum AX4]
 gi|74897085|sp|Q54QS3|DDX3_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx3; AltName:
           Full=DEAD box protein 3
 gi|60467576|gb|EAL65597.1| hypothetical protein DDB_G0283661 [Dictyostelium discoideum AX4]
          Length = 712

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 70/198 (35%), Gaps = 14/198 (7%)

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
            F +P C D + L F       P  I   A    +     +  +V      T  ++  VE
Sbjct: 431 EFDMPGCRDRQTLMFS---ATFPKQIQNLAADFLYNYIFLKVGVVGTTQNITQRIEYVVE 487

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
                 +   + D ++     GL  L+ V TKR  + LT +L +RN     +H ++   E
Sbjct: 488 ----EDKNSYLLDYLSGLKSDGL-CLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPE 542

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R   ++  R      LV  ++   GL I    LV   D             +  IGR  R
Sbjct: 543 RENALQSFRSFATPFLVATDIASRGLHIGNVNLVINFD-----LPTDIHIYVHRIGRTGR 597

Query: 681 NVNSK-VILYADTITKSI 697
                  I + +   K +
Sbjct: 598 AGKKGLAISFFNEKNKPV 615


>gi|325091997|gb|EGC45307.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus H88]
          Length = 544

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 82/210 (39%), Gaps = 22/210 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T + SAT      +  Q  + + I    G +D          VEI S   + + +   +
Sbjct: 306 QTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHL 365

Query: 576 NLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +   +  +  ++L+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK 
Sbjct: 366 DRIMEDNKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKS 425

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+ +   V   D     +  +    +  IGR  R       +   T 
Sbjct: 426 PIMVATDVASRGIDVRDITHVLNYD-----YPNNSEDYVHRIGRTGRAGAKGTAITLFTT 480

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
             + Q        R    +    K  I+P+
Sbjct: 481 DNAKQA-------RDLVAILSESKQQIDPR 503


>gi|313231162|emb|CBY19160.1| unnamed protein product [Oikopleura dioica]
          Length = 427

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 77/211 (36%), Gaps = 25/211 (11%)

Query: 522 RPTTIVVSA---TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
            P +++V          E+   + + ++ + +    V    ++           + +   
Sbjct: 222 FPQSVMVFMKEHMKNPHEINLMEELTLKGVTQYYAFVAEKQKVH--------CLNTLFSK 273

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q    I +   + +  E L + + +      Y+H+ +    R  +  D R G    LV 
Sbjct: 274 LQINQSI-IFCNSTQRVELLAKKITDLGYSCFYIHARMNQEHRNRVFHDFRKGLCRNLVC 332

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +L   G+DI    +V   D     F R   + +  IGR+ R  +  + +   T      
Sbjct: 333 SDLFTRGIDIQAVNVVINFD-----FPRMAETYLHRIGRSGRYGHLGLAINLITYDDRYN 387

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
           L      +R E+QL  + K    PQ++ + +
Sbjct: 388 L------KRIEEQLTTDIK--PIPQTIDKAL 410


>gi|301154759|emb|CBW14222.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1]
          Length = 419

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 120/354 (33%), Gaps = 56/354 (15%)

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTA-MKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           TG+ +  +     +  +H          A +     EL +++              L  R
Sbjct: 57  TGKTMAFLTATFHHLLTHQPNFATNQPRALILAPTRELAVQINH---------DAELLAR 107

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGE-----PPPTLFEYIPEDSLLFVDESHVTI 480
            +     L   G     + Y + L     G          + +Y+ +  ++ +D+  V +
Sbjct: 108 TSGLRTALAYGG-----DGYDKQLKAIEAGVDILIGTTGRVIDYV-KQGIIRLDDIQVVV 161

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT---TIVVSAT------ 531
                    +  R   L   GF        R +R+    C  P    T++ SAT      
Sbjct: 162 -------LDEADRMFDL---GFI-------RDIRYLLRKCPSPQERLTMLFSATLSYKVR 204

Query: 532 PGSWELEQCQGIIVEQIIRPTG-LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
             ++E       I  +  + TG  +   +   S   ++  +   +    +   R ++   
Sbjct: 205 ELAFEDMNSPEYIEIEPEQKTGHRIKEELFYPSNEDKIPLLLTLMEE--EWPERCIVFAN 262

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           TK   E++  YL     RV  +  +V   +R+ +++    G+ D+LV  ++   GL I +
Sbjct: 263 TKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGELDILVATDVAARGLHISD 322

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
              V   D         +   +  IGR  R   S V I +A         AI+E
Sbjct: 323 VTHVFNFD-----LPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAIEE 371


>gi|225555683|gb|EEH03974.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus G186AR]
          Length = 544

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 82/210 (39%), Gaps = 22/210 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T + SAT      +  Q  + + I    G +D          VEI S   + + +   +
Sbjct: 306 QTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHL 365

Query: 576 NLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +   +  +  ++L+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK 
Sbjct: 366 DRIMEDNKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKS 425

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+ +   V   D     +  +    +  IGR  R       +   T 
Sbjct: 426 PIMVATDVASRGIDVRDITHVLNYD-----YPNNSEDYVHRIGRTGRAGAKGTAITLFTT 480

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
             + Q        R    +    K  I+P+
Sbjct: 481 DNAKQA-------RDLVAILSESKQQIDPR 503


>gi|159030016|emb|CAO90397.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 479

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
              ++ V TK+ A +LT  L E    V   H  +  ++R  +++  R GK  ++V  ++ 
Sbjct: 243 ESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIA 302

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D        +  + I  IGR  R   +   I   + I + +   I
Sbjct: 303 ARGLDVENLSHVINYD-----LPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQI 357

Query: 702 DETTRRR 708
           ++  R+R
Sbjct: 358 EQRLRQR 364


>gi|157828874|ref|YP_001495116.1| ATP-dependent RNA helicase RhlE [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801355|gb|ABV76608.1| ATP-dependent RNA helicase RhlE [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 410

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 75/214 (35%), Gaps = 10/214 (4%)

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L E    L   M  +     ++   +   ++ SAT     +   Q  +   +    G 
Sbjct: 143 TVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSATMPKHIIAVSQKYLNNPVRITVGA 202

Query: 555 VDPPV-EIRSARTQVEDVYDEINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVR 610
            +    EI+     V D      L  Q G R   +++ V TKR A+ L + L   N    
Sbjct: 203 TNKAAAEIKQESMHVSDKEKFSALTKQLGHREGSVIIFVKTKRSADQLAKMLKYENHTAE 262

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H ++   +R  +I   R     ++V  ++   GLDIP    V   D            
Sbjct: 263 AIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYD-----LPMCPED 317

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
            +  IGR  R   +   L   +    I+  AID 
Sbjct: 318 YLHRIGRTGRAGATGHALSFISPDDVIRWRAIDR 351


>gi|304383161|ref|ZP_07365635.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella marshii
           DSM 16973]
 gi|304335738|gb|EFM01994.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella marshii
           DSM 16973]
          Length = 608

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 67/191 (35%), Gaps = 17/191 (8%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TKR  +++ + L         +H ++   +R   ++  R      LV  ++   
Sbjct: 245 AIIFCRTKRETQEVADKLIHDGYNAEPLHGDLSQPQRDLTMQKFRQHMTQFLVATDVAAR 304

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           GLD+ +   V        G      S     GR  R       I    T  +S   AI+ 
Sbjct: 305 GLDVDDLTHVINY-----GLPDDVESYTHRSGRTGRAGKKGTSIAIIHTRERSKMRAIE- 358

Query: 704 TTRRREKQLEHNK-----KHNINPQSVKEKIMEVIDPILLEDAATTNIS-IDAQQLSLSK 757
               +    + ++        I  + + + + E++   +LE+     ++ ID     + K
Sbjct: 359 ----KIIGKKFDEGTIPTAKEICSKQLYKVMDEILKTDVLEEEIAPFMTEIDRHFEYIDK 414

Query: 758 KKGKAHLKSLR 768
           +     + S+ 
Sbjct: 415 EDIIKKIVSME 425


>gi|227888706|ref|ZP_04006511.1| ATP-dependent RNA helicase [Lactobacillus johnsonii ATCC 33200]
 gi|227850733|gb|EEJ60819.1| ATP-dependent RNA helicase [Lactobacillus johnsonii ATCC 33200]
          Length = 461

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 62/331 (18%), Positives = 126/331 (38%), Gaps = 41/331 (12%)

Query: 376 TIKIYANSHYVTPRPTLNTAM-KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
              +    + +     +  A+      EL  +L ++ ++ R      L   I Y     +
Sbjct: 58  HAYLIPILNMIDENAPVTQAIVTAPSRELANQLYKVARQLRDASG--LNISIEYLGGGND 115

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL-------LFVDESHVTIPQISGMY 487
                +  E+ +  L    PG     L ++  +  +         +DE+ +T+       
Sbjct: 116 RNRQIEKAESRAPQLIIATPGR----LHDFASKKFINLENVKAFIIDEADMTLDMGFLSQ 171

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
             +   K    +    L +     P++ E +         +S  P    ++         
Sbjct: 172 MDEIMSK---LDKKAVLGAFSATIPVKLENFLRK-----YMSK-PEFIVIDN------PA 216

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           II PT + +  +++ S     +       L   Q    L+   TK+  ++LT+YL E+ +
Sbjct: 217 IIAPT-IQNDLIDVGSRD---KKSILYKLLTMGQPYLALVFANTKKTVDELTDYLVEQGL 272

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H  +   ER  IIR +R G++  +V  +L   G+D+P   LV   +  K+     
Sbjct: 273 KVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPGVSLVVNYEIPKD----- 327

Query: 668 KTSLIQTIGRAARN---VNSKVILYADTITK 695
              +I  IGR  RN    ++  ++Y D +++
Sbjct: 328 LEFVIHRIGRTGRNGLEGHAITLIYDDEMSQ 358


>gi|227825056|ref|ZP_03989888.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
 gi|226905555|gb|EEH91473.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
          Length = 532

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 18/180 (10%)

Query: 524 TTIVVSAT-PGS-------WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT P         +        I ++I+    +     E R    +V+ +   +
Sbjct: 182 QTMLFSATMPRPILSISKKYMRTPKVVAIHKEIVTAPTIDQYYYETRD---KVDGLCRIL 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +       ++++   TK+  ++L   L  R      +H ++   +R  +++  R  + D+
Sbjct: 239 DTTDDC--KMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQTQRDRVMKKFRQDQVDI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+DI     V   D       +   S +  IGR  R  N+ V L   T  +
Sbjct: 297 LVATDVAARGIDIDNITHVVNFDV-----PQDPESYVHRIGRTGRAGNTGVALTFITPRE 351


>gi|254380609|ref|ZP_04995975.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
 gi|194339520|gb|EDX20486.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
          Length = 504

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 61/173 (35%), Gaps = 18/173 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D +      A +  R+++ + TK   + LT+ L +  +R   +H      +R   +   +
Sbjct: 303 DKHRTTTEIAARDGRVIMFLDTKHAVDRLTQDLLDSGVRAAALHGGKSQPQRTRTLARFK 362

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ +    LV  +D             +   GR AR   S  ++ 
Sbjct: 363 TGHVTVLVATNVAARGIHVDNLDLVVNVDP-----PTDPKDYLHRGGRTARAGESGSVVT 417

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINP-QSVKEKIMEVIDPILLEDA 741
             T  +  ++A       R  Q        I P  +      E ++ I    A
Sbjct: 418 LVTPNQRREMA-------RLMQAA-----GITPLTTQVRSGDEALNRITGAQA 458


>gi|167739208|ref|ZP_02411982.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 14]
          Length = 460

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I + Q I     +   V     R   + + D + 
Sbjct: 242 QTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLL 301

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                    ++   TK  A+ L   L +   +   +H ++    R   IR LR  +  VL
Sbjct: 302 RDVALDQ-AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVL 360

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 361 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 413

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 414 EQGALKRIER 423


>gi|165933600|ref|YP_001650389.1| ATP-dependent RNA helicase [Rickettsia rickettsii str. Iowa]
 gi|165908687|gb|ABY72983.1| ATP-dependent RNA helicase [Rickettsia rickettsii str. Iowa]
          Length = 414

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 75/214 (35%), Gaps = 10/214 (4%)

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L E    L   M  +     ++   +   ++ SAT     +   Q  +   +    G 
Sbjct: 147 TVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSATMPKHIIAVSQKYLNNPVRITVGA 206

Query: 555 VDPPV-EIRSARTQVEDVYDEINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVR 610
            +    EI+     V D      L  Q G R   +++ V TKR A+ L + L   N    
Sbjct: 207 TNKAAAEIKQESMHVSDKEKFSALTKQLGHREGSVIIFVKTKRSADQLAKMLKYENHTAE 266

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H ++   +R  +I   R     ++V  ++   GLDIP    V   D            
Sbjct: 267 AIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYD-----LPMCPED 321

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
            +  IGR  R   +   L   +    I+  AID 
Sbjct: 322 YLHRIGRTGRAGATGHALSFISPDDVIRWRAIDR 355


>gi|126325503|ref|XP_001378186.1| PREDICTED: similar to helicase like protein 2 [Monodelphis
           domestica]
          Length = 829

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 599 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 658

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 659 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 705


>gi|319637745|ref|ZP_07992511.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
 gi|317400900|gb|EFV81555.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
          Length = 463

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 74/194 (38%), Gaps = 21/194 (10%)

Query: 521 LRPTTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSA-------RTQVED 570
            +  T++ SAT  P   +L Q      E + +      +  VE           R  +E 
Sbjct: 182 KQRQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRNLLER 241

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++++      ++++   TK+  + +T  L  R+I  + +H +     R+E +   + 
Sbjct: 242 LIVDLHM-----NQVIVFCKTKQSVDQVTRDLVRRHIAAQSIHGDKSQQSRLETLNAFKE 296

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VLV  ++   GLDI E   V   +             +  IGR  R     V I  
Sbjct: 297 GTLRVLVATDVAARGLDIAELPFVINYE-----LPTQPEDYVHRIGRTGRAGADGVAISL 351

Query: 690 ADTITKSIQLAIDE 703
            D   + +  AI E
Sbjct: 352 MDKTEQKMFEAIKE 365


>gi|223462261|gb|AAI50863.1| Ddx3x protein [Mus musculus]
          Length = 661

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 492

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 493 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 539


>gi|134034065|sp|A2QC74|DBP2_ASPNC RecName: Full=ATP-dependent RNA helicase dbp2
 gi|134056301|emb|CAK37534.1| unnamed protein product [Aspergillus niger]
          Length = 565

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T + SAT    E+ Q     +   I+             +   VE+ S   + + +   
Sbjct: 317 QTCMWSAT-WPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKH 375

Query: 575 INLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +    + +  + L+   TKR+A+++T +L +       +H + +  ER  ++ + + GK 
Sbjct: 376 LEKIMENRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKS 435

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+ +   V   D     +  +    +  IGR  R       +   T 
Sbjct: 436 PIMVATDVASRGIDVRDITHVLNYD-----YPNNSEDYVHRIGRTGRAGAKGTAITFFTT 490

Query: 694 TKSIQ 698
             S Q
Sbjct: 491 DNSKQ 495


>gi|91199667|emb|CAI78022.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
 gi|96771714|emb|CAI78296.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
 gi|117164259|emb|CAJ87801.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
 gi|126347371|emb|CAJ89079.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
          Length = 499

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 21/159 (13%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D +      A +  R+L+ + TK   + LTE+L    +R   +H      +R   +   +
Sbjct: 296 DKHAATTEIAARDGRVLMFLDTKHAVDRLTEHLLNSGVRAAALHGGKSQPQRTRTLTQFK 355

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ +    LV  +D             +   GR AR   S  ++ 
Sbjct: 356 DGHVSVLVATNVAARGIHVDSLDLVVNVDP-----PTDHKDYLHRGGRTARAGESGSVVT 410

Query: 690 ADTITKSIQLAIDETTRRR--EKQLEHNKKHNINPQSVK 726
             T             +RR   + +       I PQ+ +
Sbjct: 411 LVTP-----------NQRRGMTRLMA---TAGIVPQTTQ 435


>gi|90408322|ref|ZP_01216486.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3]
 gi|90310553|gb|EAS38674.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3]
          Length = 579

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 88/237 (37%), Gaps = 35/237 (14%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV-DPPVEIRSA--RTQVEDVYDEINLA 578
           +  T + SAT            + +QI R T    + P+E++     + VE++  +  + 
Sbjct: 185 KHQTALFSAT------------MPDQIKRITKRYMNDPIEVKIKAKTSTVENIEQKCWIV 232

Query: 579 AQQGLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
                               +++   TK    +L E L  R  R   ++ ++    R   
Sbjct: 233 RGVNKLDALTRMLETEEFDGVIIFARTKTATVELAERLEARGYRSAALNGDMNQQTRERT 292

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I  L+ G  D+LV  ++   GLD+    LV   D           S +  IGR  R    
Sbjct: 293 IARLKSGGLDILVATDVAARGLDVERISLVVNYD-----IPTDTESYVHRIGRTGRAGRK 347

Query: 685 -KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
            K IL+A    + +  AI+  TR+    +E   +  +    ++    +V D    ED
Sbjct: 348 GKAILFAAPRERRLLKAIERATRQEITIMELPTRDEVTQTRIENFQKQVFDICESED 404


>gi|302676323|ref|XP_003027845.1| hypothetical protein SCHCODRAFT_70659 [Schizophyllum commune H4-8]
 gi|300101532|gb|EFI92942.1| hypothetical protein SCHCODRAFT_70659 [Schizophyllum commune H4-8]
          Length = 459

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 65/186 (34%), Gaps = 27/186 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT                +E+   + + +  + +    V+   ++         
Sbjct: 215 QVMLFSATFPMIVKDFKEKHMNNPYEINLMEELTLRGVTQYYAYVEERQKVH-------- 266

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   +    E L + + E      Y H+++    R  +  D R 
Sbjct: 267 CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHDFRN 325

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+   LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +  + +  
Sbjct: 326 GQCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNSETYLHRIGRSGRFGHLGLAINL 380

Query: 691 DTITKS 696
            T    
Sbjct: 381 VTYEDR 386


>gi|291407356|ref|XP_002719895.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3
           [Oryctolagus cuniculus]
          Length = 661

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 492

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 493 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 539


>gi|239615016|gb|EEQ92003.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis ER-3]
 gi|327357154|gb|EGE86011.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 548

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 75/185 (40%), Gaps = 15/185 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T + SAT      +  Q  + + I    G +D          VEI S   + + +   +
Sbjct: 310 QTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHL 369

Query: 576 NLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +   +  +  ++L+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK 
Sbjct: 370 DRIMEENKNAKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKS 429

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+ +   V   D     +  +    +  IGR  R       +   T 
Sbjct: 430 PIMVATDVASRGIDVRDITHVLNYD-----YPNNSEDYVHRIGRTGRAGAKGTAITLFTT 484

Query: 694 TKSIQ 698
             + Q
Sbjct: 485 DNAKQ 489


>gi|257066575|ref|YP_003152831.1| DEAD/DEAH box helicase domain-containing protein [Anaerococcus
           prevotii DSM 20548]
 gi|256798455|gb|ACV29110.1| DEAD/DEAH box helicase domain protein [Anaerococcus prevotii DSM
           20548]
          Length = 536

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 91/262 (34%), Gaps = 45/262 (17%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ--- 580
            T   SAT G    E  +                 V+I+S    V+ +        +   
Sbjct: 176 QTCFFSATMGPEIQEFSKLY---------QTNPYEVKIKSKEVTVDRIDQYYIKLKESMK 226

Query: 581 -----------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                      +    ++   TKR  + L E L ++N  V  +H ++K   R ++++  R
Sbjct: 227 EEALMRLLEIHKANLAIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFR 286

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
                +LV  ++   GLD+ +  +V   D       +     +  IGR AR   S +   
Sbjct: 287 NKTIQILVATDIAARGLDVDDVDIVFNYD-----LPQLDEYYVHRIGRTARAGKSGLSFS 341

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNIN--PQSVKEKIMEVIDPILLEDAATTNIS 747
             +   +           R +Q+E+  K NI   P     ++    D  L+ED     IS
Sbjct: 342 LISGRDNN----------RLRQIENYTKANIKQMPVPTLVQMDRQSDLRLIED-----IS 386

Query: 748 IDAQQLSLSKKKGKAHLKSLRK 769
               +     ++    ++ + K
Sbjct: 387 SKLDKNEDLSREKDILIRLMEK 408


>gi|261418549|ref|YP_003252231.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
 gi|297528577|ref|YP_003669852.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
 gi|319765363|ref|YP_004130864.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
 gi|261375006|gb|ACX77749.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
 gi|297251829|gb|ADI25275.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
 gi|317110229|gb|ADU92721.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
          Length = 467

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 77/201 (38%), Gaps = 21/201 (10%)

Query: 524 TTIVVSAT-PGS---------WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
            T++ SAT P            E E  +    E  +         V  +     +  + D
Sbjct: 177 QTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLD 236

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                 Q     ++   TKR  ++L E L  R      +H ++   +R+ ++R  + G  
Sbjct: 237 -----IQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAI 291

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           ++LV  ++   GLDI     V   D       +   S +  IGR  R   + V +   T 
Sbjct: 292 EILVATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKTGVAMTFVTP 346

Query: 694 TKSIQ-LAIDETTRRREKQLE 713
            +  Q   I+ TT+R+ ++++
Sbjct: 347 REIGQLHHIERTTKRKMERMK 367


>gi|219521150|gb|AAI72016.1| Ddx3x protein [Mus musculus]
          Length = 661

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 432 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 491

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 492 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 538


>gi|221061229|ref|XP_002262184.1| rna helicase [Plasmodium knowlesi strain H]
 gi|193811334|emb|CAQ42062.1| rna helicase, putative [Plasmodium knowlesi strain H]
          Length = 908

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 64/183 (34%), Gaps = 10/183 (5%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             ++  TI+ SAT         +  +      +I   G  +  ++      + E+  + +
Sbjct: 547 EIVKRQTIMFSATFRKEIQVLAKEYLYNYTFLLIGKVGSTNEYIKQNLIYIEEENKCNYL 606

Query: 576 NLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                +      ++ V TKR A+ L  +L  + +    +H +    ER   ++  + G  
Sbjct: 607 LKLLSENNNGLTIIFVETKRKADILERFLNNQKLNAVCIHGDKSQDERERALKLFKRGIK 666

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           ++LV  ++   GLDI     V   D        +    I  IGR  R  N  +       
Sbjct: 667 NMLVATDVAARGLDISNIKHVINFD-----LPSNIDDYIHRIGRTGRAGNIGIATSFVND 721

Query: 694 TKS 696
              
Sbjct: 722 DNR 724


>gi|194748100|ref|XP_001956487.1| GF25239 [Drosophila ananassae]
 gi|190623769|gb|EDV39293.1| GF25239 [Drosophila ananassae]
          Length = 535

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G   VL+   L+  
Sbjct: 362 VLVFVQSKDRAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFREGSIWVLICTELMGR 421

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           G+D     LV   D     F  +  S I  IGR  R       I +      +   +I +
Sbjct: 422 GIDFKGVNLVINYD-----FPPTTISYIHRIGRTGRAGRPGRAITFFTQDDTANLRSIAQ 476


>gi|160331647|ref|XP_001712530.1| rrp3 [Hemiselmis andersenii]
 gi|159765979|gb|ABW98205.1| rrp3 [Hemiselmis andersenii]
          Length = 398

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 84/221 (38%), Gaps = 17/221 (7%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ--------VEDVYDE 574
             ++  SAT  S  LE  Q   ++  ++    ++   ++     Q        ++D Y  
Sbjct: 177 KQSLFFSAT-MSLNLENLQKNNMKNPVKIQ--INRKYKVVKTLQQNYIFIPQKLKDCYFI 233

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                  G  IL+ V T++ AE  T           Y+H  +   +R+EI++  R GK  
Sbjct: 234 YLCNEFNGSSILVFVDTQKCAEKKTLLAKFLGFNAEYLHGGMNQNKRLEILQKFRFGKIK 293

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           +L+  +L   GLDIP   LV   D             +  +GR AR   S   I      
Sbjct: 294 ILIATDLASRGLDIPNVDLVLNYDLPHL-----AKEYLHRVGRTARAGKSGRTINIVTQY 348

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
              +   I+   +++   L     H +  +   +K+ + ++
Sbjct: 349 DIHLCQKIETLVQQKFILLNFKLAHVLILEQTVDKMKQKVN 389


>gi|74006734|ref|XP_861420.1| PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide
           3 isoform 7 [Canis familiaris]
          Length = 333

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 104 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 163

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 164 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 210


>gi|74006742|ref|XP_861537.1| PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide
           3 isoform 11 [Canis familiaris]
          Length = 646

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 417 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 476

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 477 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 523


>gi|4490561|emb|CAB38638.1| RNA helicase [Plasmodium cynomolgi]
          Length = 182

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 21/166 (12%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---D 570
               ++VSAT     LE     +   I        +   G+    V +     + +   D
Sbjct: 27  ATQVVLVSATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 86

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +YD + +      + ++  +TKR  + LTE + E N  V  MH ++   ER  I+++ R 
Sbjct: 87  LYDTLTIT-----QAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 141

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           G   VL+  ++   GLD+P+  L+   D        ++   I  IG
Sbjct: 142 GASRVLISTDVWARGLDVPQVSLIINYD-----LPNNRELYIHRIG 182


>gi|71650107|ref|XP_813758.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70878673|gb|EAN91907.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 630

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 19/201 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVEDVYDEINLA 578
            T++ SAT  +   +  +  +        G V    E     +R       D  + +   
Sbjct: 321 QTLLYSATFPTEIQQLAREFLHRHYFLQVGRVGSTTENITQDVRWVED--NDKREHLLRL 378

Query: 579 AQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +     IL+ V  KR A+ L  +L    +    +H +    ER E ++  +     VL
Sbjct: 379 LHENQNQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMFKSASCQVL 438

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYAD---- 691
           V  ++   GLDIP+  +V   D        +    +  IGR  R     + I + +    
Sbjct: 439 VATDVASRGLDIPDVSIVIQYD-----MPSNIDDYVHRIGRTGRAGKVGRAISFFNEKNR 493

Query: 692 TITKSIQLAIDETTRRREKQL 712
            I   +   ++ET +   +Q+
Sbjct: 494 NIVDDLVPLLNETHQNVLQQI 514


>gi|325921307|ref|ZP_08183167.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325548274|gb|EGD19268.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 462

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 75/226 (33%), Gaps = 29/226 (12%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC---------MDNRPLRF-EEWNCL 521
            +D        +SG+          + + GF LPS           D + L F   +   
Sbjct: 136 LIDHIERRSVDLSGIEVLILDEADRMLDMGF-LPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLAA 579
                          LE  +  +  Q+  P+  V   +   +       +       LA 
Sbjct: 195 IKQLA----------LEFMRNPMQIQVT-PSNTVAESITHRVHPVDGARKRDLLLHLLAQ 243

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               + L+   TK  ++ L  +L +  I+   +H      +R+  + D + G+  VLV  
Sbjct: 244 DSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVAT 303

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           ++   G+DI E   V   D             +  IGR  RN ++ 
Sbjct: 304 DIAARGIDINELPKVINYDLPMV-----AEDYVHRIGRTGRNGSTG 344


>gi|294885690|ref|XP_002771414.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239874995|gb|EER03230.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 453

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 5/114 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++   +    E L + + E      Y+H+ +    R  +  D R G    LV  +L 
Sbjct: 318 NQAIIFCNSVNRVELLAKKITELGFSCFYIHARMYQSHRNRVFHDFRNGACRCLVSSDLF 377

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
             G+DI    +V   D     F ++  + +  IGR+ R  +  + +   T    
Sbjct: 378 TRGIDIENVNVVINFD-----FPKNSETYLHRIGRSGRFGHLGIAINMLTYDDR 426


>gi|294885688|ref|XP_002771413.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239874994|gb|EER03229.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 431

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 5/114 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++   +    E L + + E      Y+H+ +    R  +  D R G    LV  +L 
Sbjct: 296 NQAIIFCNSVNRVELLAKKITELGFSCFYIHARMYQSHRNRVFHDFRNGACRCLVSSDLF 355

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
             G+DI    +V   D     F ++  + +  IGR+ R  +  + +   T    
Sbjct: 356 TRGIDIENVNVVINFD-----FPKNSETYLHRIGRSGRFGHLGIAINMLTYDDR 404


>gi|294880791|ref|XP_002769153.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239872304|gb|EER01871.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 449

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 5/114 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++   +    E L + + E      Y+H+ +    R  +  D R G    LV  +L 
Sbjct: 314 NQAIIFCNSVNRVELLAKKITELGFSCFYIHARMYQSHRNRVFHDFRNGACRCLVSSDLF 373

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
             G+DI    +V   D     F ++  + +  IGR+ R  +  + +   T    
Sbjct: 374 TRGIDIENVNVVINFD-----FPKNSETYLHRIGRSGRFGHLGIAINMLTYDDR 422


>gi|170731293|ref|YP_001776726.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa M12]
 gi|167966086|gb|ACA13096.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
          Length = 544

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 86/244 (35%), Gaps = 29/244 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+ +  ++ +    + +         +  R   L   GF      D R +   
Sbjct: 142 TPGRLIDYLKQHEVVSLRVCEICV-------LDEADRMFDL---GFI----KDIRFILRR 187

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII--VEQIIRPTGLVDP-PVEIRSA----RTQVE 569
                   T++ SAT     LE     +   E+++  T  V    V  R        ++ 
Sbjct: 188 LPERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFPAEEEKIP 247

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   ++    +G+R ++ V TK   E +   L E   RV  +  +V   +R  ++   +
Sbjct: 248 LLLGLLS--RSEGMRTIVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQ 305

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G+ ++LV  ++   GL I     V   D             +  IGR AR       I 
Sbjct: 306 KGQLEILVATDVAARGLHIDGVNYVYNYD-----LPFDAEDYVHRIGRTARLGADGDAIS 360

Query: 689 YADT 692
           +A  
Sbjct: 361 FACE 364


>gi|15602977|ref|NP_246049.1| DeaD [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721456|gb|AAK03196.1| DeaD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 610

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 29/200 (14%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA---- 578
             T + SAT             + +I +        ++I+S +T   D+           
Sbjct: 181 HQTALFSAT---------MPDPIRRITKRFMKDPKEIKIKSTQTTNPDITQSCWYVHGFR 231

Query: 579 ----------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
                      ++    ++   TK    D+TE L +   R   ++ ++    R + +  L
Sbjct: 232 KNDALLRFLEVEKFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRL 291

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           R G  D+LV  ++   GLD+    LV   D           S +  IGR  R   +   +
Sbjct: 292 RNGSLDILVATDVAARGLDVERISLVVNYD-----IPLDAESYVHRIGRTGRAGRTGRAL 346

Query: 688 LYADTITKSIQLAIDETTRR 707
           L+ +   + +   I++ T++
Sbjct: 347 LFVEPRERRLLRNIEQLTKK 366


>gi|2580554|gb|AAC51831.1| dead box, Y isoform [Homo sapiens]
 gi|2580556|gb|AAC51832.1| dead box, Y isoform [Homo sapiens]
          Length = 660

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 66/187 (35%), Gaps = 12/187 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDV-----YDEI 575
              T++ SAT         +  + E I    G V    E I      VED+       +I
Sbjct: 373 VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDI 432

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A       L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +
Sbjct: 433 LGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 492

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   +   GLDI     V   D             +  IGR  R  N  +        K
Sbjct: 493 LVATAVAARGLDISNVRHVINFD-----LPSDIEEYVHRIGRTGRVGNLGLATSFFN-EK 546

Query: 696 SIQLAID 702
           ++ +  D
Sbjct: 547 NMNITKD 553


>gi|88800218|ref|ZP_01115786.1| ATP-dependent RNA helicase [Reinekea sp. MED297]
 gi|88777064|gb|EAR08271.1| ATP-dependent RNA helicase [Reinekea sp. MED297]
          Length = 534

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 70/191 (36%), Gaps = 11/191 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT     L   Q    + +   + P       VE        E+ Y  +    +
Sbjct: 211 QTLLFSATFSQDILNLAQRWTNDPVRVEVEPKVKTAEDVEQHVYLVSSEEKYPVLRRIVR 270

Query: 581 QGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           Q    R+++    + +  DL E L +  I  + +  +V   +RI  +   + GKF+VLV 
Sbjct: 271 QDEADRVMVFANRRDIVRDLAENLKKDGIPCQVLSGDVPQNKRIRTLDGFKEGKFEVLVA 330

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   G+ +     V                 +  IGR  R     V I +A       
Sbjct: 331 TDVAGRGIHVDGVSHVINF-----TLPEDPEDYVHRIGRTGRAGKKGVSISFACEDDSFQ 385

Query: 698 QLAIDETTRRR 708
             AI+E  +R+
Sbjct: 386 IPAIEEYIKRK 396


>gi|294676409|ref|YP_003577024.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003]
 gi|294475229|gb|ADE84617.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003]
          Length = 548

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 73/264 (27%), Gaps = 42/264 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++     LL       T  QI  +   D      + + GF         P    
Sbjct: 130 TPGRLLDHFERGKLLL------TGVQIMVVDEADR-----MLDMGFI--------PDIER 170

Query: 517 EWNC--LRPTTIVVSATPGSWELEQCQGIIVEQIIR----------PTGLVDPPVEIRSA 564
            +        T+  SAT    E+E+     +    R           T            
Sbjct: 171 IFQLTPFTRQTLFFSATMAP-EIERITNTFLHAPARIEVARQATTSETITQKLIQITPPR 229

Query: 565 RTQV-----EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           R Q      E +   I    +     ++    K   + + + L         +H ++   
Sbjct: 230 RDQSAKAKRELLRAIIKSEGEACTNAIIFCNRKTDVDIVAKSLKTHGFNAAPIHGDLDQS 289

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            R + +   R G   +L+  ++   GLDIP    V   D             +  IGR  
Sbjct: 290 LRTKTLDAFRDGSLQLLIASDVAARGLDIPAVSHVFNYD-----LPSHAEDYVHRIGRTG 344

Query: 680 RNVNSKVILYADTITKSIQLAIDE 703
           R           T   +  LA  E
Sbjct: 345 RAGRLGTAYSIGTPADAKYLAAIE 368


>gi|294665477|ref|ZP_06730761.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292604731|gb|EFF48098.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 648

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 267 MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 326

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     K +  +I+ 
Sbjct: 327 GLDVERISHVLNYD-----IPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIER 381

Query: 704 TTRR 707
            TR+
Sbjct: 382 ATRQ 385


>gi|255654878|ref|ZP_05400287.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-23m63]
 gi|296449624|ref|ZP_06891399.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP08]
 gi|296878056|ref|ZP_06902072.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP07]
 gi|296261522|gb|EFH08342.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP08]
 gi|296430956|gb|EFH16787.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP07]
          Length = 375

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 72/203 (35%), Gaps = 19/203 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA-- 579
           +  T+  SAT  S   +         ++    +    + + + + +V +  D   L A  
Sbjct: 180 KKQTLCFSATINSQVKKLAYRYTKNPVV--VSIQKEEITLNNIKQEVVETTDRKKLDALC 237

Query: 580 -----QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                      ++   TKR  ++L E L  R    + +HS++   +R  I++  R     
Sbjct: 238 KVLDEDNPFMAIIFCRTKRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQ 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTI 693
            L+  ++   GLDI     +   D        +    I  IGR  R         + D  
Sbjct: 298 YLIATDVASRGLDISGVSHIYNYD-----LPETPEDYIHRIGRTGRAGEEGYTCAFIDPK 352

Query: 694 TKSI----QLAIDETTRRREKQL 712
            + +    + AI+    RR  +L
Sbjct: 353 NERMLSEIETAIESKINRRIIEL 375


>gi|111023319|ref|YP_706291.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
 gi|110822849|gb|ABG98133.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
          Length = 555

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 73/189 (38%), Gaps = 13/189 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART----QVEDVYDEIN 576
           +  T++ SAT PG         +     IR     D  V  R+++        D  + + 
Sbjct: 223 KRQTMLFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYRAHALDKAEMVA 282

Query: 577 LAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              Q   R   ++   TKR A+ + + L ER   V  +H ++  + R + ++  R GK D
Sbjct: 283 RVLQAEGRGATMIFTRTKRTAQKVADDLAERGFSVGSVHGDLNQVAREKALKAFRTGKID 342

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           VLV  ++   G+DI +   V             + + +  IGR  R   + + +   D  
Sbjct: 343 VLVATDVAARGIDIDDVTHVINYQC-----PEDEKTYVHRIGRTGRAGRTGIAVTLVDWD 397

Query: 694 TKSIQLAID 702
                  ID
Sbjct: 398 DIPRWQLID 406


>gi|3775989|emb|CAA09197.1| RNA helicase [Arabidopsis thaliana]
          Length = 411

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 15/186 (8%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIR-PTGLVDP--------PVEIRSARTQVED 570
                 ++ SAT      +  Q  +    I+   G VD          +E+   R + + 
Sbjct: 168 NKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQR 227

Query: 571 VYDEINLA-AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           +   +      Q  R+L+  L K  AE L  +L +R  +   +H      ER   +   +
Sbjct: 228 LIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFK 287

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   +LV  ++   GLDIP+  +V         F  +    +  IGR  R     V   
Sbjct: 288 EGSCPLLVATDVAARGLDIPDVEVVINY-----TFPLTTEDYVHRIGRTGRAGKKGVAHT 342

Query: 690 ADTITK 695
             T   
Sbjct: 343 FFTPLN 348


>gi|74006722|ref|XP_861268.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 3 [Canis familiaris]
 gi|74006724|ref|XP_861300.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 4 [Canis familiaris]
 gi|74006730|ref|XP_861379.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 6 [Canis familiaris]
 gi|74006732|ref|XP_538003.2| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 1 [Canis familiaris]
          Length = 662

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 492

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 493 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 539


>gi|87196351|ref|NP_001347.3| ATP-dependent RNA helicase DDX3X isoform 1 [Homo sapiens]
 gi|3023628|sp|O00571|DDX3X_HUMAN RecName: Full=ATP-dependent RNA helicase DDX3X; AltName: Full=DEAD
           box protein 3, X-chromosomal; AltName: Full=DEAD box, X
           isoform; AltName: Full=Helicase-like protein 2;
           Short=HLP2
 gi|2148924|gb|AAB95637.1| helicase like protein 2 [Homo sapiens]
 gi|3523150|gb|AAC34298.1| DEAD box RNA helicase DDX3 [Homo sapiens]
 gi|15080078|gb|AAH11819.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Homo sapiens]
 gi|57209229|emb|CAI41416.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Homo sapiens]
 gi|119579806|gb|EAW59402.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579807|gb|EAW59403.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579808|gb|EAW59404.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579809|gb|EAW59405.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|158255742|dbj|BAF83842.1| unnamed protein product [Homo sapiens]
 gi|168277370|dbj|BAG10663.1| ATP-dependent RNA helicase DDX3X [synthetic construct]
          Length = 662

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 492

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 493 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 539


>gi|159903626|ref|YP_001550970.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888802|gb|ABX09016.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9211]
          Length = 604

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 98/267 (36%), Gaps = 31/267 (11%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQ----VEDVYDE 574
           +   I  SAT  S      +  +    E  I+        +  R    Q    +E +   
Sbjct: 226 KRQMIFFSATMPSEIRRLSKQYLHEPAEITIKAQKKEAQLIRQRYIVIQNSFKLEALKRV 285

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +   A +G  +++   TK +   L+E L   N  V  ++ +V    R   I  LR G  D
Sbjct: 286 LETTADEG--VIIFARTKAITLRLSESLEALNHNVAVLNGDVPQTLRERTIERLRQGGID 343

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   GLD+   GLV   D   +       + +  IGR  R   +   +   +  
Sbjct: 344 ILVATDVAARGLDVERIGLVINYDMPFD-----SEAYVHRIGRTGRAGRTGEAILFVSP- 397

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
                        RE+   +N +  +  QS+++  ME+ +  ++       +  +  Q  
Sbjct: 398 -------------RERSFINNLERAVG-QSIEK--MEIPNNEIINQHRINKLKNNLSQAV 441

Query: 755 LSKKKGKAHLKSLRKQMHLAADNLNFE 781
            + ++ +   + L+  +    + L  E
Sbjct: 442 ETPRQHEEETEILKCLIKEVGEELEIE 468


>gi|329941301|ref|ZP_08290580.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329299832|gb|EGG43731.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 503

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 17/157 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D ++     A +  R+++ + TK   + LT +L    +R   +H      +R   +   R
Sbjct: 301 DKHEATTRIAAREGRVIMFLDTKHAVDRLTAHLLGSGVRAAALHGGKSQPQRTRTLAQFR 360

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ +    LV  +D   +         +   GR AR   S  ++ 
Sbjct: 361 TGHVGVLVATNVAARGIHVDSLDLVVNVDPPSD-----HKDYLHRGGRTARAGESGSVVT 415

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
             T  +  + A+                  I P + +
Sbjct: 416 LVTPDQ--RRAMTRLM----------AAAGIVPTTTE 440


>gi|148828072|ref|YP_001292825.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae PittGG]
 gi|189040031|sp|A5UI36|RHLB_HAEIG RecName: Full=ATP-dependent RNA helicase rhlB
 gi|148719314|gb|ABR00442.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
          Length = 415

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 90/252 (35%), Gaps = 34/252 (13%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +DE  V +         +  R   L   GF        R +R+    C 
Sbjct: 145 IDYV-KQGVIGLDEIQVVV-------LDEADRMFDL---GFI-------RDIRYLLRKCP 186

Query: 522 RPT---TIVVSATPGSWELEQCQGIIVE------QIIRPTGLVDPPVEIRSARTQVEDVY 572
            P    T++ SAT      E     + +      +  + TG      E+     Q +   
Sbjct: 187 APQARLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKE-ELFYPSNQDKMAL 245

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               +  +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G 
Sbjct: 246 LLTLMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGD 305

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
            D+LV  ++   GL I +   V   D         +   +  IGR  R   S V I +A 
Sbjct: 306 LDILVATDVAARGLHISDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFAC 360

Query: 692 TITKSIQLAIDE 703
                   AI+E
Sbjct: 361 EEYAMNLPAIEE 372


>gi|67483276|ref|XP_656915.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56474154|gb|EAL51537.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 535

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 3/140 (2%)

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               V   +E+   R + +   +EI        ++L+ V TKR A++L   L ++  RV 
Sbjct: 368 ANESVKQIIEVCQERDR-DSKMNEIVKRIGSEKKVLIFVKTKRSADNLCYKLRDQRYRVA 426

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            MH +    ER   + D + G  + L+  ++   GLDI    +V   +   +  + +   
Sbjct: 427 CMHGDKVQAERDRALSDFKSGAVNYLIATDVASRGLDIRNIEIVINYEMPSD--IENYIH 484

Query: 671 LIQTIGRAARNVNSKVILYA 690
            I   GR  R+V  + I   
Sbjct: 485 RIGRTGRMGRSVEGEAISLF 504


>gi|310756760|gb|ADP20521.1| ATP-dependent RNA helicase DDX3X [Fukomys anselli]
          Length = 662

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++L+        +H +    +R E +   R GK 
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLFHEGYACTSIHGDRSQRDREEALHQFRSGKS 492

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 493 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 539


>gi|240276504|gb|EER40016.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus H143]
          Length = 426

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 82/210 (39%), Gaps = 22/210 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T + SAT      +  Q  + + I    G +D          VEI S   + + +   +
Sbjct: 188 QTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHL 247

Query: 576 NLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +   +  +  ++L+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK 
Sbjct: 248 DRIMEDNKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKS 307

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+ +   V   D     +  +    +  IGR  R       +   T 
Sbjct: 308 PIMVATDVASRGIDVRDITHVLNYD-----YPNNSEDYVHRIGRTGRAGAKGTAITLFTT 362

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
             + Q        R    +    K  I+P+
Sbjct: 363 DNAKQA-------RDLVAILSESKQQIDPR 385


>gi|198466271|ref|XP_002135148.1| GA23405 [Drosophila pseudoobscura pseudoobscura]
 gi|198150524|gb|EDY73775.1| GA23405 [Drosophila pseudoobscura pseudoobscura]
          Length = 597

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    +QGL+  +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G 
Sbjct: 361 MRNLVRQGLQPPVLVFVQSKDRAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFREGN 420

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
             VL+   L+  G+D     LV   D     F  +  S I  IGR  R       I +  
Sbjct: 421 IWVLICTELMGRGIDFKGVNLVINYD-----FPPTTISYIHRIGRTGRAGRPGRAITFFT 475

Query: 692 TITKSIQLAI 701
               +   +I
Sbjct: 476 QDDTANLRSI 485


>gi|78355199|ref|YP_386648.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217604|gb|ABB36953.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 572

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 96/265 (36%), Gaps = 28/265 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE--------QIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT     L+  Q  + E        +++    +     E+R  + ++E +   +
Sbjct: 225 QTVFFSATMPRAILDMAQRYLKEPEFLKVTQKLLTVPSIEQIYFEVRPFQ-KLESLCRVL 283

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++   +    ++   TK   ++L   L  R      +H  +   +R  ++   R G  D+
Sbjct: 284 DVYNPK--LTIVFCSTKVGVDELATNLQARGYDADGLHGNLNQAQRDRVMNRFRKGNIDI 341

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI-----LYA 690
           LV  ++   G+D+     V   D   +  + S    I   GRA R   +         Y 
Sbjct: 342 LVATDVAARGIDVENVEAVVNYDIPND--VESYVHRIGRTGRAGRAGRAFTFVSGREFYK 399

Query: 691 DTITKSIQLA---------IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
               K    A         + E    +  Q+ +   + I    ++  I E+++ I+ E+ 
Sbjct: 400 LRDIKRFTKAQIAQRQVPSLSEVENAKFTQMLNEVTNQIRTGGLERYI-ELVEGIIGEEF 458

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKS 766
            +   +    ++ + +  G A  + 
Sbjct: 459 TSVEAAAALLRMMMHRNAGDAVTEE 483


>gi|34581357|ref|ZP_00142837.1| ATP-dependent RNA helicase RhlE [Rickettsia sibirica 246]
 gi|28262742|gb|EAA26246.1| ATP-dependent RNA helicase RhlE [Rickettsia sibirica 246]
          Length = 410

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 75/214 (35%), Gaps = 10/214 (4%)

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L E    L   M  +     ++   +   ++ SAT     +   Q  +   +    G 
Sbjct: 143 TVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSATMPKHIIAVSQKYLNNPVRITVGA 202

Query: 555 VDPPV-EIRSARTQVEDVYDEINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVR 610
            +    EI+     V D      L  Q G R   +++ V TKR A+ L + L   N    
Sbjct: 203 TNKAAAEIKQESMHVSDKEKFSALTKQLGNREGSVIIFVKTKRSADQLAKMLKYENHTAE 262

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H ++   +R  +I   R     ++V  ++   GLDIP    V   D            
Sbjct: 263 AIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYD-----LPMCPED 317

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
            +  IGR  R   +   L   +    I+  AID 
Sbjct: 318 YLHRIGRTGRAGATGHALSFISPDDVIRWRAIDR 351


>gi|167837073|ref|ZP_02463956.1| ATP-dependent RNA helicase [Burkholderia thailandensis MSMB43]
          Length = 475

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I + Q I     +   V     R   + + D + 
Sbjct: 241 QTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLL 300

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                    ++   TK  A+ L   L +   +   +H ++    R   IR LR  +  VL
Sbjct: 301 RDVALDQ-AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVL 359

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 360 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 412

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 413 EQGALKRIER 422


>gi|225155423|ref|ZP_03723915.1| Superfamily II DNA and RNA helicase-like protein [Opitutaceae
           bacterium TAV2]
 gi|224803879|gb|EEG22110.1| Superfamily II DNA and RNA helicase-like protein [Opitutaceae
           bacterium TAV2]
          Length = 536

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 11/197 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS------ARTQVEDVYDEI 575
              T+  SAT      +     + + +    G    P E  S        +Q  D+  ++
Sbjct: 306 ARQTLFFSATLPPELAQLASWALRDPVEIKIGQRRSPAETISHAFYPVVASQKFDLLIDL 365

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    +++   TK  A+ +   L      V  +HS+    ER+E +   + GKF+V
Sbjct: 366 LSRTEFK-SVIIFTRTKMGADRIAHRLQREGHTVGVIHSDRNQRERVEALEGFKSGKFEV 424

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI     V   D  +          I   GRA  + ++  ++  D +  
Sbjct: 425 LVATDIAARGLDIAGVSHVINYDVPEN--PEDYVHRIGRTGRANASGDAFTLVTEDDVRD 482

Query: 696 --SIQLAIDETTRRREK 710
             SI+  I+    R++ 
Sbjct: 483 ARSIERYINAEIERKKI 499


>gi|28493149|ref|NP_787310.1| transcription-repair coupling factor [Tropheryma whipplei str.
           Twist]
 gi|28476189|gb|AAO44279.1| transcription-repair coupling factor [Tropheryma whipplei str.
           Twist]
          Length = 1291

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 59/181 (32%), Gaps = 35/181 (19%)

Query: 225 FVSYYDYYQPEAYV---PRTDTYIEKESSINEQIDRMRHSATRSLL-------------- 267
           F      Y PE+ +   P  DT + ++ S + +    R  A   +               
Sbjct: 93  FTDTLRTYLPESIILNFPEWDTLLHEQISPSPERVSARMEALHKISLFRKNNKRAKNAQT 152

Query: 268 ----------------ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
                                +VV+S+        +   +   +    G   E  E+ + 
Sbjct: 153 SKTLHDIGILEDNLPTIHQKLVVVASIKAFMQ-PIISDGNPPCLYFHTGGEYELSEIANI 211

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV   Y R D+   RG F + G  ++I+P   E    R+  FG  +E +  F     + I
Sbjct: 212 LVAMSYSRTDLVGARGEFAIRGGILDIYPP-TEKHPIRIEFFGRQLESMRHFRVSDQRSI 270

Query: 372 R 372
            
Sbjct: 271 G 271



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 23/199 (11%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV-----EDVYDEINLA 578
             + +SATP    LE     I E        +  P E R    T V     + V   +   
Sbjct: 894  ILAMSATPIPRTLEMSLMGIKE-----ISTLSTPPENRMPILTHVGPYRDKQVIAAVRRE 948

Query: 579  AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER--IEIIRDLRLGKFDVL 636
              +G ++            + + L +     R + +  K  ER   + + D   GK+D+L
Sbjct: 949  IIRGGQVFYIHNDTATISRVAQRLEQLIPEARVVSAHAKLAERMLEKTVIDFWEGKYDIL 1008

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            V   ++  GLD      + I  A+  G  +    L Q  GR  R           T    
Sbjct: 1009 VCTTIIETGLDNANANTIIIDSAENYGLSQ----LHQLRGRVGRGTKRAYAYLFYT---- 1060

Query: 697  IQLAIDETTRRREKQLEHN 715
                + +T  +R + +  N
Sbjct: 1061 --STLKDTAYKRLEAIARN 1077


>gi|332994630|gb|AEF04685.1| ATP-dependent RNA helicase RhlB [Alteromonas sp. SN2]
          Length = 435

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 83/266 (31%), Gaps = 46/266 (17%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNR 511
           + +Y  ++          T+  I      +  R   L   GF         RLP   +  
Sbjct: 145 ILDYYKQNVF--------TLNNIQVAVLDEADRMFDL---GFIKDIRFLFRRLPPATERL 193

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            + F      R   +                 +  +    T +         +    +D 
Sbjct: 194 SMLFSATLSYRVQELAYEHMNNP-----THVQVAPEQTTATRVSQEL--FYPSD---DDK 243

Query: 572 YDEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
              +    ++    + ++   TK   E +T++L     RV  +  +V   +R+ I+ D  
Sbjct: 244 MLLLLSLFEEEWPDKAIVFANTKYSCERVTDWLTADGHRVGLLSGDVPQKKRLGILEDFT 303

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            GK D+LV  ++   GL I     V   D             +  IGR  R   S + I 
Sbjct: 304 KGKLDILVATDVAARGLHIDSVTHVFNYD-----LPDDAEDYVHRIGRTGRAGQSGIAIS 358

Query: 689 YAD--------TITKSIQLAIDETTR 706
           +A          I K IQ AI  T  
Sbjct: 359 FACEKYAMNLPDIEKYIQHAIPVTDY 384


>gi|258541735|ref|YP_003187168.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256632813|dbj|BAH98788.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256635870|dbj|BAI01839.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03]
 gi|256638925|dbj|BAI04887.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07]
 gi|256641979|dbj|BAI07934.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22]
 gi|256645034|dbj|BAI10982.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26]
 gi|256648089|dbj|BAI14030.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32]
 gi|256651142|dbj|BAI17076.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654133|dbj|BAI20060.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12]
          Length = 445

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 30/197 (15%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT     +E     ++    R        VE+    + V+ +   +      G 
Sbjct: 182 QTLLFSAT-MPRSIEDLAASLLNDPAR--------VEVAPPSSTVDRIQQAVMFVNGAGD 232

Query: 584 ---------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
                          R ++  L K  A  + E+L + N+    +H       R   ++  
Sbjct: 233 KRDALLNMVESPKVSRAVVFTLMKHEANKVAEFLNKNNVVAEAIHGNKSQGARERAMKGF 292

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVI 687
           R G   VLV  ++   G+D+ +   V   D           S +  IGR AR   +   +
Sbjct: 293 RSGSVKVLVATDIAARGIDVDDVSHVFNYD-----LPNVPESYVHRIGRTARAGRDGWAV 347

Query: 688 LYADTITKSIQLAIDET 704
            + D   ++    I+ T
Sbjct: 348 SFCDAEQRAWLRDIERT 364


>gi|297565173|ref|YP_003684145.1| DEAD/DEAH box helicase domain-containing protein [Meiothermus
           silvanus DSM 9946]
 gi|296849622|gb|ADH62637.1| DEAD/DEAH box helicase domain protein [Meiothermus silvanus DSM
           9946]
          Length = 538

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 80/210 (38%), Gaps = 16/210 (7%)

Query: 524 TTIVVSATPGSW-----ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
            T + SAT  SW     E      + V  +       +        +T++  + D I   
Sbjct: 186 QTFLFSATVPSWAKRLAERYMRDPVHVNVVKDEQVSYEELALQAPLQTRLNTLTDVIFAY 245

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A    R ++   TK   ++L   L  R I    +H ++   ER  ++   R G   VLV 
Sbjct: 246 AP--ERTIVFTRTKAEVDELATGLQARGIGAAPIHGDMSQRERERVLGRFREGTDTVLVA 303

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDIPE  LV      ++       S     GRA R+   +VIL+     +   
Sbjct: 304 TDVAARGLDIPEVDLVVHFRLPEKAEPYQHRS--GRTGRAGRSG--RVILFYGPRERREL 359

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEK 728
             ++   +RR       + +   P+ V+E 
Sbjct: 360 ENLEYAVKRR-----FKRVNPPTPEEVQEA 384


>gi|171681521|ref|XP_001905704.1| hypothetical protein [Podospora anserina S mat+]
 gi|170940719|emb|CAP65947.1| unnamed protein product [Podospora anserina S mat+]
          Length = 540

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 92/285 (32%), Gaps = 45/285 (15%)

Query: 467 EDSLLFVDESHVTIP------QISGMYRGDFHRKATLA--EYGFRLPSCMDNRPLRFEEW 518
           +D +   D  H+ +        ++G    D          E    L +       +  ++
Sbjct: 141 DDIVRLQDPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADKLLSAEFTPVIEQLLQF 200

Query: 519 NCLRPTTIVVSAT-PG------------SWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565
           +      ++ SAT P              +E+     + +  I +    V+   ++    
Sbjct: 201 HPKDRQVMLFSATFPISVKDFSDKNMKEPYEINLMDELTLRGITQYYAYVEEKQKVH--- 257

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
                  + +    Q    I +   +    E L + + E      Y H++++   R  + 
Sbjct: 258 -----CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHAKMQQHARNRVF 311

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +  
Sbjct: 312 HDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRYGHLG 366

Query: 686 -VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             I   +   +     I+      E Q          P ++ + +
Sbjct: 367 LAINLINWDDRFNLYNIERDL-GTEIQ--------PIPATIDKSL 402


>gi|62087546|dbj|BAD92220.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 variant [Homo
           sapiens]
          Length = 674

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 445 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 504

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 505 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 551


>gi|91788228|ref|YP_549180.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91697453|gb|ABE44282.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 422

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 91/247 (36%), Gaps = 21/247 (8%)

Query: 522 RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
           R   +  SAT  P    L +       + I    + +   +I     QV+       L  
Sbjct: 184 RRQNLFFSATFPPAIEVLAESMLHDPLR-IEVQAVPETKPDIAQRAIQVDASRRTQLLRH 242

Query: 579 ---AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               ++  R L+ V TK  AE + + L + +I     H E+   +R ++++D R+    V
Sbjct: 243 LVQTEKWERALVFVATKHAAEIVADKLRKVHIEAEPFHGELSQGKRTQVLQDFRIKAVQV 302

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +V  ++   G+DI +  +V   D       RS       IGR  R   S + +   +   
Sbjct: 303 VVATDVAARGIDIAQMPVVVNYD-----LPRSAVDYTHRIGRTGRAGESGLAVSFVSAGT 357

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
                + E  +R+  +++  +     P       +E + P   + A+T  I         
Sbjct: 358 EAHFKLIE--KRQGIKVQREQVEGFEP-------LETLAPNAADPASTGGIKGKRPSKKD 408

Query: 756 SKKKGKA 762
             ++  A
Sbjct: 409 KLREAAA 415


>gi|142843|gb|AAA22389.1| unknown [Bacillus subtilis]
          Length = 57

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 38/53 (71%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
           F++ + Y P GDQP AI +L+KGI   +K Q LLG TG+GKTFT++ +I+ + 
Sbjct: 5   FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVN 57


>gi|2580550|gb|AAC51829.1| dead box, X isoform [Homo sapiens]
 gi|2580552|gb|AAC51830.1| dead box, X isoform [Homo sapiens]
          Length = 662

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 492

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 493 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 539


>gi|332113313|gb|AEE02033.1| X-linked DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Sus scrofa]
          Length = 661

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 5/123 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 492

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV   +   GLDI     V   D             +  IGR  R  N  +       
Sbjct: 493 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLGLATSFFNE 547

Query: 694 TKS 696
             +
Sbjct: 548 RNA 550


>gi|323454961|gb|EGB10830.1| hypothetical protein AURANDRAFT_21789 [Aureococcus anophagefferens]
          Length = 510

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 66/180 (36%), Gaps = 16/180 (8%)

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL-------VDPPVEIRSARTQVED 570
           +   R  T++ SAT      +  +G +V  ++            V   VE      ++  
Sbjct: 253 FEAQR-QTLLFSATMPQKFQDFARGALVRSVLVNVSRAGAANLDVIQEVEYVKLEARIVY 311

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + + +   A     +++    K   +D+ EYL  + +    +H      ER   I   + 
Sbjct: 312 LLECLQKTAPP---VVIFCERKGDVDDIHEYLLLKGVEAVSIHGGKDQGERNGAIDAFKR 368

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G  DVLV  ++  +GLD P+   V   D   E       + +  IGR  R   + V    
Sbjct: 369 GAKDVLVATDVAAKGLDFPDIQHVINFDMPAE-----IENYVHRIGRTGRCGKTGVATTF 423


>gi|302850370|ref|XP_002956712.1| hypothetical protein VOLCADRAFT_77220 [Volvox carteri f.
           nagariensis]
 gi|300257927|gb|EFJ42169.1| hypothetical protein VOLCADRAFT_77220 [Volvox carteri f.
           nagariensis]
          Length = 648

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 12/130 (9%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    KR  + + EYL  + +    +H +    +R   I   + G+ DVLV  ++  +
Sbjct: 457 VLIFAENKRDVDAIHEYLMVQGVEAVAVHGDKAQEDRHAAIHQFKAGEKDVLVATDVASK 516

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-------YADTITKSI 697
           GLD P+   V   D  +E       + +  IGR  R   + V          ++TI   +
Sbjct: 517 GLDFPDIQHVINYDMPEE-----IENYVHRIGRTGRCGKTGVATTFINTKQCSETILLDL 571

Query: 698 QLAIDETTRR 707
           +  + E  +R
Sbjct: 572 KHLLREAKQR 581


>gi|301118220|ref|XP_002906838.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262108187|gb|EEY66239.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 447

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 8/146 (5%)

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
              + +  +   + +V     +R A      +     L A +   +L+   ++   E + 
Sbjct: 255 SAPMTILALSTTSNVVHDVQFVRPAEKPSRLLR---VLRATKQPPVLVFCNSRSSVERVA 311

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
             L      V  +H       R   +R  R G  DVLV  +L   GLD+P    V + D 
Sbjct: 312 RLLRNEQFHVAPLHGGQSQGYRTRALRAFRAGYVDVLVATDLASRGLDLPGVEHVILFD- 370

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSK 685
                  +    +   GR  R+    
Sbjct: 371 ----IPHTIEDYVHRCGRTGRHPGGG 392


>gi|260581720|ref|ZP_05849517.1| superfamily II DNA and RNA helicase [Haemophilus influenzae NT127]
 gi|260095313|gb|EEW79204.1| superfamily II DNA and RNA helicase [Haemophilus influenzae NT127]
          Length = 415

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 90/252 (35%), Gaps = 34/252 (13%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +DE  V +         +  R   L   GF        R +R+    C 
Sbjct: 145 IDYV-KQGVIALDEIQVVV-------LDEADRMFDL---GFI-------RDIRYLLRKCP 186

Query: 522 RPT---TIVVSATPGSWELEQCQGIIVE------QIIRPTGLVDPPVEIRSARTQVEDVY 572
            P    T++ SAT      E     + +      +  + TG      E+     Q +   
Sbjct: 187 APQARLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKE-ELFYPSNQDKMAL 245

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               +  +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G 
Sbjct: 246 LLTLMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGN 305

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
            D+LV  ++   GL I +   V   D         +   +  IGR  R   S V I +A 
Sbjct: 306 LDILVATDVAARGLHISDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFAC 360

Query: 692 TITKSIQLAIDE 703
                   AI+E
Sbjct: 361 EEYAMNLPAIEE 372


>gi|239981277|ref|ZP_04703801.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291453134|ref|ZP_06592524.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291356083|gb|EFE82985.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 503

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 56/162 (34%), Gaps = 19/162 (11%)

Query: 567 QVE--DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           QV   D +      A +  R++L + TK   + L E+L    +R   +H      +R   
Sbjct: 298 QVHGPDKHALATEIAARDGRVILFLDTKHAVDRLAEHLLRNGVRAAALHGGRSQAQRTRT 357

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +   R G    LV  N+   G+ + +  LV  +D   +         +   GR AR   S
Sbjct: 358 LTQFRDGHVTALVATNVAARGIHVDDLDLVVNVDPPAD-----HKDYLHRGGRTARAGAS 412

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
             ++                 +RR           I PQ+ +
Sbjct: 413 GSVVTLVLP-----------EQRRSMSRLM-ADAGITPQTTR 442


>gi|294880789|ref|XP_002769152.1| ATP-dependent RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239872303|gb|EER01870.1| ATP-dependent RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 230

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 5/114 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++   +    E L + + E      Y+H+ +    R  +  D R G    LV  +L 
Sbjct: 95  NQAIIFCNSVNRVELLAKKITELGFSCFYIHARMYQSHRNRVFHDFRNGACRCLVSSDLF 154

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
             G+DI    +V   D     F ++  + +  IGR+ R  +  + +   T    
Sbjct: 155 TRGIDIENVNVVINFD-----FPKNSETYLHRIGRSGRFGHLGIAINMLTYDDR 203


>gi|242021756|ref|XP_002431309.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212516577|gb|EEB18571.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 675

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 88/251 (35%), Gaps = 37/251 (14%)

Query: 457 PPPTLFEYIPEDS-------LLFVDESHVTI-----PQISGMYRGDFHRKATLAEYGFRL 504
            P  L +++ + +        L +DE+   +     PQI  +       +  L    +  
Sbjct: 252 TPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLM---WSA 308

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
               + R L  E  N      I          L+      + QI+      +        
Sbjct: 309 TWPKEVRRLAEEFLNDYVQINI--------GSLQLSANHNILQIVDVCSEYEK------- 353

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           +T++  + +EI    +   + ++ V TK+  +++   +     +   +H +    +R  +
Sbjct: 354 QTKLLKLLNEIANEPET--KTMIFVETKKKVDEIARAVTRYGYQALAIHGDKSQSDRDYV 411

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +   R G+ ++LV  ++   GLD+ +   V   D     +  +    +  IGR  R+  +
Sbjct: 412 LNQFRCGRVNILVATDVAARGLDVDDVKFVINFD-----YPNNSEDYVHRIGRTGRHDKT 466

Query: 685 KVILYADTITK 695
                  T + 
Sbjct: 467 GTAYTFFTPSN 477


>gi|71908923|ref|YP_286510.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71848544|gb|AAZ48040.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 507

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 78/206 (37%), Gaps = 39/206 (18%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY-DEINLAAQQG 582
            +++ SAT  S E+++    +++  I         +E+ + R QV D     ++  ++ G
Sbjct: 206 QSLLFSAT-FSEEIKKLADTMLKSPI--------LIEV-ARRNQVSDTITHRVHPVSEYG 255

Query: 583 LR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            R               ++   TK+    LT  L    I+   +H +   LERI+ +   
Sbjct: 256 KRGLLTKLLKSGEIRQCIVFCRTKQGCSRLTRELQRAGIKADAIHGDKSQLERIKALEAF 315

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS---- 684
           + G+ D L+  ++   GLD+ +   V   +        +    +  IGR  R        
Sbjct: 316 KGGETDALIATDVAARGLDVDDLPYVINYE-----LPHTPEDYVHRIGRTGRAGKKGNAI 370

Query: 685 -----KVILYADTITKSIQLAIDETT 705
                  + Y   I K I+  I++  
Sbjct: 371 SLVSAHEVCYLVDIEKLIKRPIEQVE 396


>gi|333026815|ref|ZP_08454879.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
 gi|332746667|gb|EGJ77108.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
          Length = 492

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 5/131 (3%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D +      A +  R+LL + TK   + LTE+L    +R   +H      +R   +   +
Sbjct: 294 DKHAIATEIAARDGRVLLFLDTKHAVDRLTEHLLRSGVRAAALHGGKSQPQRTRTLEQFK 353

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ + +  LV  +D             +   GR AR   S  +  
Sbjct: 354 TGHVSVLVATNVAARGIHVDDLDLVVNVDP-----PTDHKDYLHRGGRTARAGRSGRVAT 408

Query: 690 ADTITKSIQLA 700
             T  +   +A
Sbjct: 409 LVTPNQRRSMA 419


>gi|330447222|ref|ZP_08310872.1| ATP-dependent RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491413|dbj|GAA05369.1| ATP-dependent RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 436

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 78/223 (34%), Gaps = 26/223 (11%)

Query: 503 RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
           R+P+  +   L F         T+       ++E       ++ +  + TG      E+ 
Sbjct: 185 RMPAPTERLSLLFSA-------TLSYRVKELAFEHMNSPESVIVEPEQKTGHRIQE-ELF 236

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
               Q +    +  +  +   R ++   TK   ED+  +L     RV  +  +V   +R 
Sbjct: 237 YPSNQEKMRLLQTLIEEEWPERAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRE 296

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
            I+     G  D+LV  ++   GL IP    V   D             +  IGR  R  
Sbjct: 297 RILDQFTKGDIDILVATDVAARGLHIPAVTHVFNYD-----LPDDAEDYVHRIGRTGRAG 351

Query: 683 -NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
            +   I +A       + AI+         +E   +H I PQS
Sbjct: 352 ASGHSISFACE-----EYAINLPA------IETYIEHGI-PQS 382


>gi|308159948|gb|EFO62462.1| ATP-dependent RNA helicase [Giardia lamblia P15]
          Length = 901

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 12/172 (6%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIR------SARTQVEDVYDEIN 576
             I+VSAT P +  +     +    II     +  P E+           +   +     
Sbjct: 233 QIIMVSATMPNNLAVFSKARLQNPAIIAAEDDLVLPNELTNQFIYCPINYREAALLYICR 292

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               +  R+L+ V TK   E LT  L   N+R   ++  +   +R   + D   G++ +L
Sbjct: 293 ELVPKNWRLLVFVATKHHCEYLTSVLQANNLRATCIYGSLDQKQRTLALSDFDKGRYSIL 352

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +  ++   G+DIP    V   +     F  S  + +  +GR+AR  +  + +
Sbjct: 353 ISTDVAARGIDIPNLNCVINYN-----FPSSGKNYVHRVGRSARAGSYGLCI 399


>gi|294625117|ref|ZP_06703762.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292600581|gb|EFF44673.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 648

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 267 MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 326

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     K +  +I+ 
Sbjct: 327 GLDVERISHVLNYD-----IPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIER 381

Query: 704 TTRR 707
            TR+
Sbjct: 382 ATRQ 385


>gi|224042619|ref|XP_002190578.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3
           [Taeniopygia guttata]
          Length = 675

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 449 DLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 508

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 509 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 555


>gi|219971722|gb|ACL68521.1| vasa-like protein [Pleurodeles waltl]
          Length = 727

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 94/272 (34%), Gaps = 51/272 (18%)

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           +PS  D + L F      R  ++        +       ++V Q+      V+  +    
Sbjct: 489 MPSKEDRQTLMFSATFPERIQSLAKEFLKSDY-----LFVVVGQVGGACSDVEQIIIPVG 543

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              + + + + +        R ++ V TK+                  +H +    ER E
Sbjct: 544 QHGKKDKLVEILQGLGI--ERTMVFVKTKKR---------------ASIHGDRLQKEREE 586

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            + D R GK +VLV  N+   GLDI     V I D        +    +  IGR  R  N
Sbjct: 587 ALADFRFGKCNVLVATNVAARGLDIENVQHVIIYD-----LSDNIEEYVHRIGRTGRCGN 641

Query: 684 -SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED-- 740
             K I + DT         D T  R   ++  + +  +              P  LE+  
Sbjct: 642 VGKAITFFDTDDNE-----DRTVARSLVKVLSDAQQEV--------------PAWLEEVA 682

Query: 741 --AATTNISIDAQQLSLSKKKGKAHLKSLRKQ 770
             A+ T  SI +   S+  ++G +H+     Q
Sbjct: 683 FSASGTFSSIGSTFASVDSRRGVSHVPGGHAQ 714


>gi|115470561|ref|NP_001058879.1| Os07g0143700 [Oryza sativa Japonica Group]
 gi|113610415|dbj|BAF20793.1| Os07g0143700 [Oryza sativa Japonica Group]
          Length = 292

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             G + ++   TKR A+ L  Y   R+   + +H ++   +R   +   R G+F++LV  
Sbjct: 16  ANGGKCIVFTQTKREADRLA-YAMGRSYACQALHGDISQNQRERTLSGFRDGRFNILVAT 74

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   GLDIP   LV            +    +   GR AR       +   T  ++  +
Sbjct: 75  DVAARGLDIPNVDLVI-----HYELPNTSELFVHRSGRTARAGKKGSAILIYTNDQARAV 129

Query: 700 AIDE 703
            I E
Sbjct: 130 RIIE 133


>gi|78048530|ref|YP_364705.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036960|emb|CAJ24661.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 648

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 267 MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 326

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     K +  +I+ 
Sbjct: 327 GLDVERISHVLNYD-----IPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIER 381

Query: 704 TTRR 707
            TR+
Sbjct: 382 ATRQ 385


>gi|71275290|ref|ZP_00651577.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71902030|ref|ZP_00684074.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|71164099|gb|EAO13814.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71728209|gb|EAO30396.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
          Length = 544

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 86/244 (35%), Gaps = 29/244 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+ +  ++ +    + +         +  R   L   GF      D R +   
Sbjct: 142 TPGRLIDYLKQHEVVSLRVCEICV-------LDEADRMFDL---GFI----KDIRFILRR 187

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII--VEQIIRPTGLVDP-PVEIRSA----RTQVE 569
                   T++ SAT     LE     +   E+++  T  V    V  R        ++ 
Sbjct: 188 LPERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFPAEEEKIP 247

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   ++    +G+R ++ V TK   E +   L E   RV  +  +V   +R  ++   +
Sbjct: 248 LLLGLLS--RSEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQ 305

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G+ ++LV  ++   GL I     V   D             +  IGR AR       I 
Sbjct: 306 KGQLEILVATDVAARGLHIDGVNYVYNYD-----LPFDAEDYVHRIGRTARLGADGDAIS 360

Query: 689 YADT 692
           +A  
Sbjct: 361 FACE 364


>gi|301171467|ref|NP_001180345.1| ATP-dependent RNA helicase DDX3X isoform 2 [Homo sapiens]
          Length = 661

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 492

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 493 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 539


>gi|237747736|ref|ZP_04578216.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
 gi|229379098|gb|EEO29189.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
          Length = 469

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 98/275 (35%), Gaps = 33/275 (12%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEINL-- 577
            +   ++ SAT  +   +  +  + + +       +   E ++    ++E+      +  
Sbjct: 195 KQRQNLLFSATFSNDIKKLARSFMKDPVTVEVARQNATAENVKQTVYRIEESEKNAAVEH 254

Query: 578 --AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +   ++L+   TK  A  L   L  + ++   +H +    ER+  +   + G  D+
Sbjct: 255 LLKDRNQEQVLIFSNTKAGASRLARQLERKGMKASAIHGDKTQAERMATLEAFKSGSIDI 314

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GL I E   V   D             +  IGR  R  +    I       
Sbjct: 315 LVATDVAARGLHIEELPCVINFDLPFV-----AEDYVHRIGRTGRAGSKGEAISLYSEKD 369

Query: 695 KSIQLAIDETTRR---REKQLEHNKKHNINPQS------------------VKEKIMEV- 732
           + +   I++ T+R    EK  +  ++ +++P++                  +++K  +  
Sbjct: 370 ERLLKEIEKLTKRQLPLEKLTDFEREKHVSPETGGTAYGKRFDRSPYKSVGLEKKSKDPW 429

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSL 767
            D   +  A  ++   +   L   KK   A L  L
Sbjct: 430 FDQPYVPSATKSDKESEKPALKTVKKPIAALLGGL 464


>gi|221311883|ref|ZP_03593730.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221316207|ref|ZP_03598012.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221321119|ref|ZP_03602413.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221325403|ref|ZP_03606697.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|255767828|ref|NP_391790.2| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|254763269|sp|P42305|DBPA_BACSU RecName: Full=ATP-dependent RNA helicase dbpA
 gi|225185456|emb|CAB15947.2| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 479

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 22/240 (9%)

Query: 525 TIVVSAT-PGSWE-LEQCQGIIVEQI-IRPTGLVDPPVE-----IRSARTQVEDVYDEIN 576
           T++ SAT P   E L +      E I ++  GL    +E     +R    +   + D + 
Sbjct: 178 TMLFSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVRE-ENKFSLLKDVLM 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +     ++   TK     LT+ L +       +H  +   +R +++ + + G++  L
Sbjct: 237 --TENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITK 695
           V  ++   G+DI    LV   D   E     K S +   GR  R  N  K I +     K
Sbjct: 295 VATDVAARGIDIENISLVINYDLPLE-----KESYVHRTGRTGRAGNKGKAISFVTAFEK 349

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
                I+E         E  K    + + V  K  E +  +     +  + S +  +  +
Sbjct: 350 RFLADIEE-----YIGFEIQKIEAPSQEEVARKKPEFLAKLNDRPESKKDKSEELNKDIM 404


>gi|168000763|ref|XP_001753085.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695784|gb|EDQ82126.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 638

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 55/130 (42%), Gaps = 8/130 (6%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++     +G + ++   TKR A+D+   +    +    +H ++  L+R + +   R 
Sbjct: 262 ILSDLITVHAKGGKTIVFTQTKRDADDVAMAMGNL-VACGALHGDISQLQREKTLNAFRE 320

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VIL 688
           G   VLV  ++   GLD+P   LV               + +   GR  R   +   +++
Sbjct: 321 GNITVLVATDVAARGLDVPNVDLVI-----HYEIPNDSETFVHRTGRTGRAGKTGTNILM 375

Query: 689 YADTITKSIQ 698
           + +   ++++
Sbjct: 376 FTNQQMRTMR 385


>gi|146306338|ref|YP_001186803.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145574539|gb|ABP84071.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 441

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 84/235 (35%), Gaps = 26/235 (11%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG--------SWELEQCQG 542
           F     + + GF      D + L           T++ SAT G        +  L++ Q 
Sbjct: 152 FDEADRMLDMGF----AEDAQRLAEACG---PHQTLLFSATTGGNGLREMVAKVLKEPQH 204

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           +++  + +        +         E + D +  A +   + ++   T+  A+ L   L
Sbjct: 205 LMLNSVSQLNEGTRQQIITADHNHHKEQLVDWLL-ANETYDKAIVFTNTRVQADRLYGKL 263

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
               ++   +H E    +R   I  LR G   VLV  ++   GLD+    LV   D  + 
Sbjct: 264 VAAGVKAFVLHGEKDQKDRKLAIERLRQGAVKVLVATDVAARGLDVDGLDLVINFDMPRS 323

Query: 663 GFLRSKTSLIQTIGRAARNVNSK----VILYADT-ITKSIQLAIDETTRRREKQL 712
           G        +  IGR  R         +I + D  +  SI+  + +   RR  + 
Sbjct: 324 G-----DEYVHRIGRTGRAGGEGLAISLICHTDWNLMSSIERYLKQRFERRTIKE 373


>gi|134277372|ref|ZP_01764087.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
 gi|226198998|ref|ZP_03794561.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
 gi|134251022|gb|EBA51101.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
 gi|225929098|gb|EEH25122.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
          Length = 513

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I + Q I     +   V     R   + + D + 
Sbjct: 242 QTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLL 301

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                    ++   TK  A+ L   L +   +   +H ++    R   IR LR  +  VL
Sbjct: 302 RDVALDQ-AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVL 360

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 361 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 413

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 414 EQGALKRIER 423


>gi|148222272|ref|NP_001086456.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Xenopus laevis]
 gi|117167895|gb|AAI24841.1| LOC446276 protein [Xenopus laevis]
          Length = 614

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G    +L+ V +   A++L   L    I V  +H+E    +R  +I+  R GK
Sbjct: 409 MRDLVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNVIQSFREGK 468

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYAD 691
             VL+   LL  G+D     +V   D     F       I  IGR  R  +  K + +  
Sbjct: 469 IWVLICTALLARGIDFKGVNMVINYD-----FPAGAVEYIHRIGRTGRAGHKGKAVSFFT 523

Query: 692 TITKSIQLAI 701
              K +  ++
Sbjct: 524 EDDKPMLRSV 533


>gi|15892943|ref|NP_360657.1| ATP-dependent RNA helicase RhlE [Rickettsia conorii str. Malish 7]
 gi|15620136|gb|AAL03558.1| ATP-dependent RNA helicase RhlE [Rickettsia conorii str. Malish 7]
          Length = 414

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 75/214 (35%), Gaps = 10/214 (4%)

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L E    L   M  +     ++   +   ++ SAT     +   Q  +   +    G 
Sbjct: 147 TVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSATMPKHIIAVSQKYLNNPVRITVGA 206

Query: 555 VDPPV-EIRSARTQVEDVYDEINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVR 610
            +    EI+     V D      L  Q G R   +++ V TKR A+ L + L   N    
Sbjct: 207 TNKAAAEIKQESMHVSDKEKFSALTKQLGNREGSVIIFVKTKRSADQLAKMLKYENHTAE 266

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H ++   +R  +I   R     ++V  ++   GLDIP    V   D            
Sbjct: 267 AIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYD-----LPMCPED 321

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
            +  IGR  R   +   L   +    I+  AID 
Sbjct: 322 YLHRIGRTGRAGATGHALSFISPDDVIRWRAIDR 355


>gi|126453899|ref|YP_001066782.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
 gi|237812839|ref|YP_002897290.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
 gi|242315830|ref|ZP_04814846.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
 gi|254179293|ref|ZP_04885892.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1655]
 gi|254189321|ref|ZP_04895832.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pasteur 52237]
 gi|254198045|ref|ZP_04904467.1| DEAD/DEAH box helicase [Burkholderia pseudomallei S13]
 gi|126227541|gb|ABN91081.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
 gi|157937000|gb|EDO92670.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pasteur 52237]
 gi|169654786|gb|EDS87479.1| DEAD/DEAH box helicase [Burkholderia pseudomallei S13]
 gi|184209833|gb|EDU06876.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1655]
 gi|237504437|gb|ACQ96755.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
 gi|242139069|gb|EES25471.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
          Length = 513

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I + Q I     +   V     R   + + D + 
Sbjct: 242 QTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLL 301

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                    ++   TK  A+ L   L +   +   +H ++    R   IR LR  +  VL
Sbjct: 302 RDVALDQ-AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVL 360

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 361 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 413

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 414 EQGALKRIER 423


>gi|332374906|gb|AEE62594.1| unknown [Dendroctonus ponderosae]
          Length = 458

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 75/198 (37%), Gaps = 12/198 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII----RPTGLVDPP---VEIRSARTQVEDVYDEIN 576
             +  SAT     ++  + I+   I+    R    +D         S   +  +    I 
Sbjct: 248 QMLFFSATYSQEVMDFAEHIVKNPIVIRLRREEESLDNIGQYYFKCSTADEKYNALTNIY 307

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G   +    TK+MAE L++ +      V  +  ++   +RI ++   R GK  VL
Sbjct: 308 GTLSIGQ-AINFCRTKKMAEWLSQKMSNDGHAVAILSGDLTVEQRINVLDRFREGKEKVL 366

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKT-SLIQTIGRAARNVNSKVILYADTITK 695
           +  N+L  G+D+ +  +V   D       ++   + +  IGR  R     + +       
Sbjct: 367 ITTNVLSRGIDVEQVTIVVNFDLPVNVEGKADCETYLHRIGRTGRFGKKGLAINLVDSDS 426

Query: 696 SIQ--LAIDETTRRREKQ 711
           S++    I+E    R+ Q
Sbjct: 427 SMKILRDIEE-HFGRKIQ 443


>gi|296235289|ref|XP_002762845.1| PREDICTED: ATP-dependent RNA helicase DDX3X isoform 1 [Callithrix
           jacchus]
 gi|297709768|ref|XP_002831596.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Pongo
           abelii]
          Length = 660

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 492

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 493 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 539


>gi|282852128|ref|ZP_06261485.1| DEAD/DEAH box helicase [Lactobacillus gasseri 224-1]
 gi|282556692|gb|EFB62297.1| DEAD/DEAH box helicase [Lactobacillus gasseri 224-1]
          Length = 415

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 9/135 (6%)

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           II PT + +  +++ S   + E +Y  + +   Q    L+   TK+  ++LT YL E+ +
Sbjct: 220 IIAPT-IQNDLIDVGSRDKK-EILYKLLTM--GQPYLALVFANTKKTVDELTNYLEEQGL 275

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H  +   ER  IIR +R G++  +V  +L   G+D+P   LV   +  K+     
Sbjct: 276 KVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPGVSLVVNYEIPKD----- 330

Query: 668 KTSLIQTIGRAARNV 682
              +I  IGR  RN 
Sbjct: 331 LEFVIHRIGRTGRNG 345


>gi|224083374|ref|XP_002307002.1| predicted protein [Populus trichocarpa]
 gi|222856451|gb|EEE93998.1| predicted protein [Populus trichocarpa]
          Length = 895

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 68/181 (37%), Gaps = 13/181 (7%)

Query: 523 PTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGL------VDPPVEIRSARTQVEDVYDEI 575
             T++ SAT P   E    + +     I+  G       ++  VE+R    +   + + +
Sbjct: 437 HQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDINQLVEVRPEGERWFRLLELL 496

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            + +++G +IL+ V ++   + L   L +       +H      +R   I D +    ++
Sbjct: 497 GVWSEKG-KILVFVQSQDKCDALFRDLLKFGHPCLSLHGAKDQTDRESTISDFKSNVCNL 555

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   GLD+ +  LV   D             +  +GR  R       +   +   
Sbjct: 556 LIATSVAARGLDVKDLELVINYDV-----PNHYEDYVHRVGRTGRAGRKGCAITFFSEDD 610

Query: 696 S 696
           +
Sbjct: 611 A 611


>gi|221195199|ref|ZP_03568255.1| dead/deah box helicase [Atopobium rimae ATCC 49626]
 gi|221185102|gb|EEE17493.1| dead/deah box helicase [Atopobium rimae ATCC 49626]
          Length = 457

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 62/180 (34%), Gaps = 9/180 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIR---SARTQ-VEDVYDE 574
           +  T++ SAT     +     ++ +     I  TG     VE       + Q VE +   
Sbjct: 218 KRQTLLFSATLPPSIISTIDNMLHDPTMIEIARTGQTADTVEEHLCPVVQGQKVELLESL 277

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I        RIL+   TK   + +   L     +V  MH++     R   +   R G   
Sbjct: 278 IRSFRPAPERILVFCRTKLRVDSVYAALNNAGFKVDVMHADRPQGARTRALTKFRNGTIQ 337

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  +++  G+D+     V   D   +         I   GRA     +   +  D I 
Sbjct: 338 ILVATDVMSRGIDVQGIDAVVNFDVPLD--PEDYVHRIGRTGRAGSAGQAFTFMAPDEIA 395


>gi|207347082|gb|EDZ73384.1| YDL160Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256273565|gb|EEU08498.1| Dhh1p [Saccharomyces cerevisiae JAY291]
 gi|259145084|emb|CAY78348.1| Dhh1p [Saccharomyces cerevisiae EC1118]
 gi|323334302|gb|EGA75683.1| Dhh1p [Saccharomyces cerevisiae AWRI796]
          Length = 506

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 73/182 (40%), Gaps = 16/182 (8%)

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           LPS   ++ L F     L     +V      +E+   + + ++ I +        VE R 
Sbjct: 216 LPS--THQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQ----YYAFVEERQ 269

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
               +  ++ ++ +      + ++   +    E L + + +      Y H+ +K  ER +
Sbjct: 270 KLHCLNTLFSKLQI-----NQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNK 324

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  + R GK   LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 325 VFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD-----FPKTAETYLHRIGRSGRFGH 379

Query: 684 SK 685
             
Sbjct: 380 LG 381


>gi|58584965|ref|YP_198538.1| superfamily II DNA/RNA helicase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58419281|gb|AAW71296.1| Superfamily II DNA/RNA helicase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 408

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 70/180 (38%), Gaps = 11/180 (6%)

Query: 521 LRPTTIVVSAT-PGSW-ELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEI 575
                ++ SAT PG   +L +      E++      T  V    EI    ++ E     +
Sbjct: 175 KMRQNLMFSATLPGDIVKLAEKYSNQPERVSVENEATTSVKIKQEI-IYASESEKYGKLV 233

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               Q+   I++ V TK+ A+ L   L + N     +H ++K  +R  +I   R G   +
Sbjct: 234 TQLYQRKGSIIVFVRTKQRADQLAYKLRKDNHSALAIHGDLKQRKRKRVINSFRRGHNQI 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +V  ++   GLDIP    V   DA       S+ + I   GR AR       L   T   
Sbjct: 294 MVATDVASRGLDIPHIQHVINYDA-----PESQANYIHRTGRTARAGAEGYALSFITSQD 348


>gi|71421857|ref|XP_811932.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70876653|gb|EAN90081.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 631

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 19/201 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVEDVYDEINLA 578
            T++ SAT  +   +  +  +        G V    E     +R       D  + +   
Sbjct: 322 QTLLYSATFPTEIQQLAREFLHRHYFLQVGRVGSTTENITQDVRWVED--NDKREHLLRL 379

Query: 579 AQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +     IL+ V  KR A+ L  +L    +    +H +    ER E ++  +     VL
Sbjct: 380 LHENQNQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMFKSASCQVL 439

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYAD---- 691
           V  ++   GLDIP+  +V   D        +    +  IGR  R     + I + +    
Sbjct: 440 VATDVASRGLDIPDVSIVIQYD-----MPSNIDDYVHRIGRTGRAGKVGRAISFFNEKNR 494

Query: 692 TITKSIQLAIDETTRRREKQL 712
            I   +   ++ET +   +Q+
Sbjct: 495 NIVDDLVPLLNETHQNVLQQI 515


>gi|332208638|ref|XP_003253414.1| PREDICTED: ATP-dependent RNA helicase DDX25 isoform 2 [Nomascus
           leucogenys]
          Length = 369

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 71/208 (34%), Gaps = 25/208 (12%)

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GF   S    R L  E         ++ SAT      E       E+II    ++    E
Sbjct: 143 GFSDHSIRIQRALPSEC------QMLLFSAT-----FEDSVWHFAERIIPDPNVIKLRKE 191

Query: 561 IRSARTQVEDVYDEINLAAQQGL------------RILLTVLTKRMAEDLTEYLYERNIR 608
                  +   Y        +              + ++   T+R A+ LT  + E   +
Sbjct: 192 -ELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIEDGHQ 250

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD-KEGFLRS 667
           V  +  E+   +R  II+  R GK  VL+  N+   G+D+ +  +V   D   K G    
Sbjct: 251 VSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKPGEEPD 310

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITK 695
             + +  IGR  R     +      + K
Sbjct: 311 YETYLHRIGRTGRFGKKGLAFNMIEVDK 338


>gi|332208636|ref|XP_003253413.1| PREDICTED: ATP-dependent RNA helicase DDX25 isoform 1 [Nomascus
           leucogenys]
          Length = 483

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 71/208 (34%), Gaps = 25/208 (12%)

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GF   S    R L  E         ++ SAT      E       E+II    ++    E
Sbjct: 257 GFSDHSIRIQRALPSEC------QMLLFSAT-----FEDSVWHFAERIIPDPNVIKLRKE 305

Query: 561 IRSARTQVEDVYDEINLAAQQGL------------RILLTVLTKRMAEDLTEYLYERNIR 608
                  +   Y        +              + ++   T+R A+ LT  + E   +
Sbjct: 306 -ELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIEDGHQ 364

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD-KEGFLRS 667
           V  +  E+   +R  II+  R GK  VL+  N+   G+D+ +  +V   D   K G    
Sbjct: 365 VSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKPGEEPD 424

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITK 695
             + +  IGR  R     +      + K
Sbjct: 425 YETYLHRIGRTGRFGKKGLAFNMIEVDK 452


>gi|317026711|ref|XP_001399394.2| ATP-dependent RNA helicase dbp2 [Aspergillus niger CBS 513.88]
          Length = 564

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T + SAT    E+ Q     +   I+             +   VE+ S   + + +   
Sbjct: 317 QTCMWSAT-WPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKH 375

Query: 575 INLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +    + +  + L+   TKR+A+++T +L +       +H + +  ER  ++ + + GK 
Sbjct: 376 LEKIMENRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKS 435

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+ +   V   D     +  +    +  IGR  R       +   T 
Sbjct: 436 PIMVATDVASRGIDVRDITHVLNYD-----YPNNSEDYVHRIGRTGRAGAKGTAITFFTT 490

Query: 694 TKSIQ 698
             S Q
Sbjct: 491 DNSKQ 495


>gi|307331142|ref|ZP_07610269.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306883222|gb|EFN14281.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 507

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 69/195 (35%), Gaps = 19/195 (9%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D +      A +  R ++ + TK   ++LT++L    +R   +H      +R   +   +
Sbjct: 296 DKHATTTEIAAREGRSIMFLDTKHAVDNLTKHLLNSGVRAAALHGGKSQPQRTRTLAQFK 355

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ +    LV  +D   +         +   GR AR   S  ++ 
Sbjct: 356 TGHVTVLVATNVAARGIHVDNLDLVVNVDPPSD-----HKDYLHRGGRTARAGESGSVVT 410

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS--VKEKIMEVIDPILLEDAATTNIS 747
                +        T  R            I PQS  V+    E+      +  +   ++
Sbjct: 411 LVLPNQR------RTMNRLM------ADAGITPQSTQVRSGEAELSRITGAQAPSGVPVT 458

Query: 748 IDAQQLSLSKKKGKA 762
           I A  +   K+ G +
Sbjct: 459 IAAPVVERPKRSGSS 473


>gi|307293134|ref|ZP_07572980.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306881200|gb|EFN12416.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 460

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 74/218 (33%), Gaps = 19/218 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            + + GF  P     + L  E         +  SAT    E+E      +   ++ +   
Sbjct: 159 QMMDMGFIHPLKRIAKLLPKER------QNLFFSAT-MPGEIEALAAQFLHDPVKVSVAP 211

Query: 556 DPPVEIRSAR-----TQVE-DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
                 R  +      Q+E      + +  +   R L+   TK  A+ +  +L    I+ 
Sbjct: 212 QSTTAERVRQQATFVNQMEKQALLNLTIRNEDIDRALIFTRTKHGADRVVRFLEGAGIQA 271

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H      +R   ++  R G   +LV  ++   G+D+     V   +           
Sbjct: 272 VAIHGNKSQAQRTTALQAFRHGHVKLLVATDIAARGIDVSGVSHVINFE-----LPNVPE 326

Query: 670 SLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDETTR 706
             +  IGR AR     + I +     +    AI+ TT+
Sbjct: 327 QYVHRIGRTARAGAEGIAISFVADDERPYLKAIERTTK 364


>gi|326789718|ref|YP_004307539.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326540482|gb|ADZ82341.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 592

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 97/261 (37%), Gaps = 41/261 (15%)

Query: 524 TTIVVSATPGS--------WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             ++ SAT           ++       +V + +    +    +E+R +  +VE +   I
Sbjct: 182 QFVLFSATLAKAILDIANKYQNNPITVNVVHKELTVPTVKQYYLEVRDS-NKVEVLSRLI 240

Query: 576 NLAAQQGLRI-LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +       ++ ++   TKR  +DL   L  R      +H ++K L+R  ++   R G  D
Sbjct: 241 D---ANNFKLSVVFCNTKRRVDDLCRDLQARGYSAESLHGDMKQLQRDNVMSRFRNGLID 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+  ++   G+D+ +   V   D   +     +   +  IGR  R     V        
Sbjct: 298 ILIATDVAARGIDVDDVDAVFNYDVPSD-----EEYYVHRIGRTGRAQREGVSYTF---- 348

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS--IDAQQ 752
                A  E  + R+ Q           +  K KI  +I P  +ED     +S  ID  +
Sbjct: 349 ----AAGKELAKLRDIQ-----------RYTKSKIK-LIKPPSIEDIQENKLSGIIDDVK 392

Query: 753 LSLSKKKGKAHLKSLRKQMHL 773
             L++ K   +   + K M  
Sbjct: 393 AILAEGKLTKYTGFIEK-MLE 412


>gi|291544767|emb|CBL17876.1| Superfamily II DNA and RNA helicases [Ruminococcus sp. 18P13]
          Length = 555

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 92/253 (36%), Gaps = 26/253 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
            T++ SAT     +   +    +    +I      VD  +E     T +    D + L  
Sbjct: 160 QTVLFSATMPPEIMAITKQFQKDPTVIKIAAKHRTVDT-IEQYYYETAMGRKTDALRLLL 218

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            A +    ++   TKR  ++LTE L ++ I+   +H ++K ++R +++   + G+  VLV
Sbjct: 219 LAYEPKSAMVFCNTKRTVDELTEALCDKGIQAAGLHGDMKQMQRTQVMNAFKSGRIGVLV 278

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   G+D+    LV   D       +     I  IGR  R   S             
Sbjct: 279 ATDVAARGIDVNGIDLVFNYD-----LPQDNEYYIHRIGRTGRAGKSGT----------- 322

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
             A+   + RR+     +         + +K +     +  +     + ++         
Sbjct: 323 --ALTLVSGRRQVFALRDIAK-YTKAEIIQKALPTRADLAAKKTQQLHDAVAQACAEQPS 379

Query: 758 KKGKAHLKSLRKQ 770
            + +  L  L ++
Sbjct: 380 SRAEELLNRLTEE 392


>gi|281204115|gb|EFA78311.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1026

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 74/204 (36%), Gaps = 23/204 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTG---LVDPPVEIR------------SARTQV 568
            T++ SAT    E+E      + + +R T     +   + +                  V
Sbjct: 685 QTLMFSAT-WPREVESLSNRFLNKPVRVTVGNTELSANINVHQHIVATTGMTRPDVAKMV 743

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL-YERNIRVRYMHSEVKTLERIEIIRD 627
            +   EI+   ++   I++    KR  +  +EYL  E  +    MHS  +  +R   + +
Sbjct: 744 GEQIQEIHNQDKKDNLIIVFCNQKRNCDHFSEYLYNEFQMNSVVMHSGKEQYQRERGLAN 803

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            +  +  +++  ++   GLDIP    V  LD     F  +    +  IGR  R       
Sbjct: 804 FKSHRIPIMIATDVAARGLDIPNVKAVVNLD-----FPNNIEDYVHRIGRTGRAGKKGDS 858

Query: 688 LYADTITKSIQLAIDETTRRREKQ 711
               +   +    + +  + R KQ
Sbjct: 859 YSYVSREDNNLRDLAKILQ-RAKQ 881


>gi|126728206|ref|ZP_01744022.1| putative ATP-dependent RNA helicase protein [Sagittula stellata
           E-37]
 gi|126711171|gb|EBA10221.1| putative ATP-dependent RNA helicase protein [Sagittula stellata
           E-37]
          Length = 425

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 7/177 (3%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVEDVYDEINLA 578
            T++ SAT      E     + + +   + P G     +E  +     + +      +L 
Sbjct: 177 QTMLFSATMPKQMAEIASAYLTDPVRIEVTPPGKPVERIEQSVHFVEQKAKTPLLVHHLD 236

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             +    L+   TK  AE L  +L ++      +H      +R   ++  R G+  VLV 
Sbjct: 237 LHRTEAALVFARTKHGAEKLKRHLEDKGFAAGSIHGNKSQGQRDRALKAFREGELTVLVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            ++   G+DIP    V   D        +    I    RA R+  +     A+ + +
Sbjct: 297 TDVAARGIDIPSVRYVYNYDLP--NVADNYVHRIGRTARAGRDGTAIAYCSAEEMGE 351


>gi|300794325|ref|NP_001179891.1| ATP-dependent RNA helicase DDX3X [Bos taurus]
 gi|297493243|ref|XP_002700250.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Bos
           taurus]
 gi|296470612|gb|DAA12727.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Bos taurus]
          Length = 661

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 432 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 491

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 492 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 538


>gi|74006740|ref|XP_861512.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 10 [Canis familiaris]
          Length = 640

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q+    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +LV 
Sbjct: 416 TQKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 475

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             +   GLDI     V   D             +  IGR  R  N  
Sbjct: 476 TAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 517


>gi|13514809|ref|NP_004651.2| ATP-dependent RNA helicase DDX3Y [Homo sapiens]
 gi|169881239|ref|NP_001116137.1| ATP-dependent RNA helicase DDX3Y [Homo sapiens]
 gi|73620957|sp|O15523|DDX3Y_HUMAN RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|23273291|gb|AAH34942.1| DDX3Y protein [Homo sapiens]
 gi|119612016|gb|EAW91610.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Homo sapiens]
 gi|119612017|gb|EAW91611.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Homo sapiens]
          Length = 660

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 66/187 (35%), Gaps = 12/187 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDV-----YDEI 575
              T++ SAT         +  + E I    G V    E I      VED+       +I
Sbjct: 373 VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDI 432

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A       L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +
Sbjct: 433 LGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 492

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   +   GLDI     V   D             +  IGR  R  N  +        K
Sbjct: 493 LVATAVAARGLDISNVRHVINFD-----LPSDIEEYVHRIGRTGRVGNLGLATSFFN-EK 546

Query: 696 SIQLAID 702
           ++ +  D
Sbjct: 547 NMNITKD 553


>gi|319775175|ref|YP_004137663.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|329122905|ref|ZP_08251476.1| ATP-dependent RNA helicase RhlB [Haemophilus aegyptius ATCC 11116]
 gi|317449766|emb|CBY85973.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|327471836|gb|EGF17276.1| ATP-dependent RNA helicase RhlB [Haemophilus aegyptius ATCC 11116]
          Length = 415

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 90/252 (35%), Gaps = 34/252 (13%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +DE  V +         +  R   L   GF        R +R+    C 
Sbjct: 145 IDYV-KQGVIGLDEIQVVV-------LDEADRMFDL---GFI-------RDIRYLLRKCP 186

Query: 522 RPT---TIVVSATPGSWELEQCQGIIVE------QIIRPTGLVDPPVEIRSARTQVEDVY 572
            P    T++ SAT      E     + +      +  + TG      E+     Q +   
Sbjct: 187 APQARLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKE-ELFYPSNQDKMAL 245

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               +  +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G 
Sbjct: 246 LLTLMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGD 305

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
            D+LV  ++   GL I +   V   D         +   +  IGR  R   S V I +A 
Sbjct: 306 LDILVATDVAARGLHISDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFAC 360

Query: 692 TITKSIQLAIDE 703
                   AI+E
Sbjct: 361 EEYAMNLPAIEE 372


>gi|310789728|gb|EFQ25261.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 551

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 79/210 (37%), Gaps = 23/210 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E+       +   I+             +   VE+ +   + + +   
Sbjct: 308 QTLMWSAT-WPKEVRALASDFLTDFIQVNIGSLELAANHRITQVVEVVNESEKRDRMIKH 366

Query: 575 INLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +         ++L+ V TKR+A+++T +L +       +H + +  ER  ++   + GK 
Sbjct: 367 LEKMMDNKENKVLIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKS 426

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+     V   D     +  +    I  IGR  R       +   T 
Sbjct: 427 PIMVATDVASRGIDVRNITHVLNYD-----YPNNSEDYIHRIGRTGRAGAMGTAVTFFTT 481

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
             S + A D     RE       K  I+P+
Sbjct: 482 DNS-KQARDLVNVLRE------AKQEIDPR 504


>gi|154318026|ref|XP_001558332.1| hypothetical protein BC1G_02996 [Botryotinia fuckeliana B05.10]
 gi|150843654|gb|EDN18847.1| hypothetical protein BC1G_02996 [Botryotinia fuckeliana B05.10]
          Length = 535

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 29/206 (14%)

Query: 566 TQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
            Q+ ++      A  +G +  ++  +       LT    E  I  +++  +   +ER   
Sbjct: 143 DQINELTVRTWFAKAKGRKSTIVFCVDLAHVGGLTNKFREYGIDSQFVTGDTPKIERSAR 202

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +   R G+F VL+   +  EG DIP    V +    K     S+  LIQ IGR  R    
Sbjct: 203 LDAFRNGEFPVLINCGVFTEGTDIPNIDCVLLARPTK-----SRNLLIQMIGRGMRLHPG 257

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT 744
           K   +   +  ++   I  T                         +  +DP  L D A  
Sbjct: 258 KENCHIIDMVATLSTGIVTT-----------------------PTLFGLDPSELVDEANP 294

Query: 745 NISIDAQQLSLSKKKGKAHLKSLRKQ 770
           +     ++    +++ K   + +  +
Sbjct: 295 DDLKSLKERKEEEEERKRKAEDMEAK 320


>gi|6682259|gb|AAF23311.1|AC016661_36 putative RNA helicase [Arabidopsis thaliana]
          Length = 545

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L + L   NIR   +HS++   ER   +   R G+  VL+  +++  
Sbjct: 387 VLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIAR 446

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           G+D      V   D     F  S ++ I  IGR+ R   S   I +           I  
Sbjct: 447 GMDFKGINCVINYD-----FPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIAN 501

Query: 704 T 704
           T
Sbjct: 502 T 502


>gi|330468685|ref|YP_004406428.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328811656|gb|AEB45828.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
          Length = 566

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +     ++   ++   + LTE +  R  R   +H  +   +R  ++  LR G  D+LV 
Sbjct: 255 VESPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRGGTADLLVA 314

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   GLD+ +   V   D        +  S +  IGR  R     V I  A+     +
Sbjct: 315 TDVAARGLDVEQLSHVVNYDV-----PSAPESYVHRIGRVGRAGREGVAITLAEPREHRM 369

Query: 698 QLAIDETTRRR 708
              I+  T +R
Sbjct: 370 LKTIERVTGQR 380


>gi|297830944|ref|XP_002883354.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329194|gb|EFH59613.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 615

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G + ++   TKR A+ L   L  ++ +   +H ++   +R   +   R G F++LV  +
Sbjct: 364 KGGKCIVFTQTKRDADRLAFGLA-KSFKCEALHGDISQAQRERTLAGFRDGNFNILVATD 422

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           +   GLD+P   LV            +  + +   GR  R       +      +S  + 
Sbjct: 423 VAARGLDVPNVDLVI-----HYELPNNTETFVHRTGRTGRAGKKGSAILIHGQEQSRAVK 477

Query: 701 IDETT 705
           + E  
Sbjct: 478 MIEKE 482


>gi|209809226|ref|YP_002264764.1| putative ATP-dependent RNA helicase 1 [Aliivibrio salmonicida
           LFI1238]
 gi|208010788|emb|CAQ81183.1| putative ATP-dependent RNA helicase 1 [Aliivibrio salmonicida
           LFI1238]
          Length = 418

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 94/262 (35%), Gaps = 28/262 (10%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++  +        ++T+ Q   +   +  R     + GF +P        R  
Sbjct: 133 TPGRLLDHLHLN--------NITLNQAEYLVLDEADRM---LDMGF-MPDIQ-----RIL 175

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE-QIIR--PTGLVDPPVE--IRSARTQVEDV 571
                +  T+  SAT G    E    I+   ++++  P+      VE  +       +  
Sbjct: 176 RKMASKHQTLFFSATFGDKIKEIAYRILDNPKVVQVTPSNSTADTVEQMVYPVDKHRKSE 235

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                + ++   ++L+   TK+ ++DL + L    I+   ++ +     RI  + + + G
Sbjct: 236 LLAYLIGSRNWKQVLVFTKTKQGSDDLVKELKLDGIKAASINGDKSQGARIRALEEFKTG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYA 690
           K   L+  ++   GLDI +   V   +             +  IGR  R  ++ K +   
Sbjct: 296 KIRALIATDVAARGLDIEQLECVINYE-----LPFKAEDYVHRIGRTGRAGHTGKAVSLM 350

Query: 691 DTITKSIQLAIDETTRRREKQL 712
                 +  AI+     R  Q 
Sbjct: 351 SADEDYLLKAIETLLDTRLPQE 372


>gi|189197935|ref|XP_001935305.1| DEAD box family helicase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187981253|gb|EDU47879.1| DEAD box family helicase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 672

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 6/136 (4%)

Query: 570 DVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            +  +  LA  +  R  L+  +      +LT    +     +Y+  +     R   I   
Sbjct: 289 QLVVKAWLAKAKDRRSTLVFCVDLSHVTNLTARFRKHGFDAQYVTGDTPAKIRSARIESF 348

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G+F VL+   +  EG DIP    V +    K     S+  L+Q IGR  R   +K   
Sbjct: 349 RNGEFPVLLNCGVFTEGTDIPNIDCVLLARPTK-----SRNLLVQMIGRGMRLHETKRDC 403

Query: 689 YADTITKSIQLAIDET 704
           +   +  ++   +  T
Sbjct: 404 HVIDMVSTLSTGVVST 419


>gi|50311069|ref|XP_455558.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660286|sp|Q6CKI1|PRP5_KLULA RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|49644694|emb|CAG98266.1| KLLA0F10505p [Kluyveromyces lactis]
          Length = 812

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 70/157 (44%), Gaps = 7/157 (4%)

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDL 598
             + +I E I +   + D    ++     ++ + D + L   +  + ++ V ++++ + L
Sbjct: 459 NSKSLINENIQQRVQIFDEE-HVK-FEFLLKRLSDRLALHRGEDEKTIIFVGSQQLCDLL 516

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
            + L    I    +H+   + ER+  ++  +     +L+   +L  GL++PE  LV I +
Sbjct: 517 YDELLLNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYN 576

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           A K     +    + T+GR  R  N+ V L    + +
Sbjct: 577 AAK-----TIAQYVHTVGRTGRGTNNGVALSFVMVDE 608


>gi|219669142|ref|YP_002459577.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
 gi|219539402|gb|ACL21141.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 530

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 72/187 (38%), Gaps = 14/187 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVE--IRSARTQVE-DVYDEIN 576
             ++ SAT    E+++     + Q     +    L  P +E     AR +++ D    I 
Sbjct: 183 QVMLFSAT-MPPEIKKLAQNYMHQPKSVAVSRDELTVPLIEQVFYEARDKIKVDALCRII 241

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G   ++   TKR  ++L   L  R      +H ++   +R  +++  R GK ++L
Sbjct: 242 DMEDIGQ-AIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELL 300

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLDI     V   D       +   S +  IGR  R       +   +  + 
Sbjct: 301 VATDVAARGLDIDNVTHVINFD-----IPQDPESYVHRIGRTGRAGRKGQAITLVSSREY 355

Query: 697 IQLAIDE 703
            QL + E
Sbjct: 356 RQLRLIE 362


>gi|326405112|ref|YP_004285194.1| ATP-dependent RNA helicase RhlE [Acidiphilium multivorum AIU301]
 gi|325051974|dbj|BAJ82312.1| ATP-dependent RNA helicase RhlE [Acidiphilium multivorum AIU301]
          Length = 470

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++   TK  A+ +T +L +  I    +H      +R   +   R G+  VLV  ++ 
Sbjct: 246 ERAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRVLVATDIA 305

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G+D+     V   +           S +  IGR AR     V +
Sbjct: 306 ARGIDVDNVSHVVNFE-----LPNVPESYVHRIGRTARAGAEGVAI 346


>gi|317153822|ref|YP_004121870.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944073|gb|ADU63124.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 421

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 70/197 (35%), Gaps = 14/197 (7%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVEDVYDEI 575
           +   ++ SAT P    + +    I+    R       PVE            ++    E 
Sbjct: 177 KRQNLLFSATMPAD--IRKLADTILVDPARVQVSNTVPVESVTQTFYPVADHLKGGLLEA 234

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            L + +   +L+   TK  A++L + L  R +   ++   +   +R   +   R G F++
Sbjct: 235 LLGSMERESVLVFTRTKHRAKNLAKRLGLRGMSATFLQGNMSQNQRQRALDGFRCGDFEI 294

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +V  ++   G+D      V   DA       +  +    IGR  R   +   L   T   
Sbjct: 295 MVATDIAARGIDCDRISHVINFDA-----PDTAEAYTHRIGRTGRAGRTGEALSLITRED 349

Query: 696 SI-QLAIDETTRRREKQ 711
            +    I+   RR   Q
Sbjct: 350 HLVVRDIERVLRRSVDQ 366


>gi|241204840|ref|YP_002975936.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858730|gb|ACS56397.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 521

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 60/182 (32%), Gaps = 15/182 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVED-----VYDE 574
            T+  SAT    E+++     ++   R            V  R   +  +D     V  E
Sbjct: 186 QTLFFSAT-MPSEIQKLADRFLQNPERIEVAKPASAAETVTQRFVASHGKDYEKRAVLRE 244

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +  A  +    ++    K+   DL   L      V  +H ++    R   ++  R G   
Sbjct: 245 LVRAQTELKNAIVFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNLQ 304

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   GLDIP+   V   D             +  IGR  R   S       T  
Sbjct: 305 LLVASDVAARGLDIPDVSHVFNFDVPI-----HSEDYVHRIGRTGRAGRSGAAFTLVTKR 359

Query: 695 KS 696
            +
Sbjct: 360 DT 361


>gi|167584411|ref|ZP_02376799.1| Putative ATP-dependent RNA helicase, rhlE [Burkholderia ubonensis
           Bu]
          Length = 481

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 79/211 (37%), Gaps = 17/211 (8%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVE-DVYDEINL 577
            T++ SAT          GI+   V+  + P       ++  +     + + D++  +  
Sbjct: 181 QTLLFSATFSDDIRAMAAGILRGPVKISVSPPNATAGKIKQWVVPVDKRNKPDLFMHLVA 240

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                   L+ V T++  + L   L E    V  +H +     R+  +   + G+  +LV
Sbjct: 241 ENDWKH-ALVFVKTRKGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVHMLV 299

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI    LV  +D             +  IGR  R   S V +      ++ 
Sbjct: 300 ATDVAARGLDINGLPLVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADEAP 354

Query: 698 QLAIDETTRR----REKQLEHNKKHNINPQS 724
           QLA  E   R    RE++     +H   PQ+
Sbjct: 355 QLAAIEALIRQTLPREEEPGFEAEHR-VPQT 384


>gi|330504959|ref|YP_004381828.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328919245|gb|AEB60076.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 447

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 89/254 (35%), Gaps = 32/254 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +           ++ V   Q+  +   +  R     + GF        R L  E
Sbjct: 131 TPGRLLD--------LYRQNAVKFSQLQTLILDEADRM---LDLGFA-------RELD-E 171

Query: 517 EWNCL--RPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVE 569
            ++ L  +  T++ SAT      +    ++ + +   + P       V+  +     + +
Sbjct: 172 LFSALPKKRQTLLFSATFSDAIRQMAGELLRDPLSVEVSPRNAAAKTVKQWLIPVDKKRK 231

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                  L  ++  ++L+   T++  + L + L    +    +H +     R+  +   +
Sbjct: 232 SELFLHLLQVKRWGQVLVFAKTRKGVDQLEQELLAMGVAADSIHGDKPQPSRLRALERFK 291

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G+  +LV  ++   GLDI +  LV  LD        +    +  IGR  R  ++   I 
Sbjct: 292 AGEVQILVATDVAARGLDIDDLPLVVNLD-----LPINAEDYVHRIGRTGRAGSTGEAIS 346

Query: 689 YADTITKSIQLAID 702
                      AI+
Sbjct: 347 LVCADEVDQLAAIE 360


>gi|300708923|ref|XP_002996632.1| hypothetical protein NCER_100260 [Nosema ceranae BRL01]
 gi|239605948|gb|EEQ82961.1| hypothetical protein NCER_100260 [Nosema ceranae BRL01]
          Length = 490

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 80/255 (31%), Gaps = 31/255 (12%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMY-RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWN 519
           L +Y   D+ + +      I  +   +   D        E      S    +    + + 
Sbjct: 153 LVDY--SDANIIIATPGRLIFNLEKKFINFDNLDTIVFDEADKLYDSTFKRQIDTIKSFI 210

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV---DPPV------EIRSARTQVED 570
                T + SAT       +    I   I +P  +    D  +      EI     +++ 
Sbjct: 211 KKDVQTCMFSAT-----YCKEIRDIFNLITKPDRVYFEADFEIKTNVKQEIYPNFKKIDK 265

Query: 571 VYDEI--------NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           + + +             +  ++++ V  K     +   L  +      +H +    ER 
Sbjct: 266 IVEVLKSLTLVGNWRETVESEKVMIFVERKVDCLKVANLLNSKGYNSVTLHGDKSQYERN 325

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E I   + G   +L+  N+   GLDI E  LV   D       R+    I  IGR  R  
Sbjct: 326 EAISKFKSGLSSILIATNVAARGLDIREVKLVINYD-----LPRTIDEYIHRIGRTGRAG 380

Query: 683 NSK-VILYADTITKS 696
                I + D    S
Sbjct: 381 EEGRAISFFDWKYNS 395


>gi|171913474|ref|ZP_02928944.1| DEAD/DEAH box helicase-like protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 452

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 77/233 (33%), Gaps = 22/233 (9%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            + + GF LPS       R  +    +  T++ SAT            +        G  
Sbjct: 159 RMLDMGF-LPSIK-----RIVKALPKKRQTLLFSATLSKEIEALTHEFLNHPKTVQIGKR 212

Query: 556 DPPVE-----IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
             P E     +      ++       L       +L+    K  A+ +  +L    I+  
Sbjct: 213 SNPAESVTQFVYEVPKHLKPALLVHLLKDPAFNMVLVFSRMKHGADRIARHLDRYGIKTV 272

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +HS     +R+  + D + G   VLV  ++   G+D+     V   D     F      
Sbjct: 273 TLHSNRTQNQRLRALADFKSGAARVLVATDIAARGIDVDGISHVVNYD-----FPMHAED 327

Query: 671 LIQTIGRAARNVNSK-VILYA----DTITKSIQLAIDE-TTRRREKQLEHNKK 717
            +  IGR  R       I +         KS++  I     R+R +  ++N+ 
Sbjct: 328 YVHRIGRTGRAHAVGDAISFISPEDHGPLKSLERFIGRGIVRKRAEGFDYNEA 380


>gi|166713488|ref|ZP_02244695.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 460

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 29/226 (12%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC---------MDNRPLRF-EEWNCL 521
            +D        +SG+          + + GF LPS           D + L F   +   
Sbjct: 136 LIDHIERRSVDLSGIEVLILDEADRMLDMGF-LPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLAA 579
                          LE  +  +  Q+  P+  V   +   +       +       LA 
Sbjct: 195 IKQLA----------LEFMRNPMQIQVT-PSNTVAESITHRVHPVDGARKRDLLLHLLAQ 243

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               + L+   TK  ++ L  +L +  I+   +H      +R+  + D + G+  VLV  
Sbjct: 244 DSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVAT 303

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           ++   G+DI +   V   D             +  IGR  RN ++ 
Sbjct: 304 DIAARGIDIDQLPKVINYDLPMV-----AEDYVHRIGRTGRNGSTG 344


>gi|71800669|gb|AAZ41384.1| Ded1-like DEAD-box RNA helicase [Chironomus tentans]
          Length = 776

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TK+ A+ L E+LY+    V  +H +    ER + ++  R G   +LV   +   
Sbjct: 535 TLIFVETKKGADALEEFLYQNKHPVTSIHGDRSQREREDALKCFRSGDCPILVATAVAAR 594

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GLDIP    V   D             +  IGR  R  N  +  
Sbjct: 595 GLDIPHVKHVINYD-----LPSDVEEYVHRIGRTGRMGNLGIAT 633


>gi|1170509|sp|P41378|IF4A_WHEAT RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
          Length = 414

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 77/197 (39%), Gaps = 16/197 (8%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 205 YDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE 264

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 265 EWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDII 322

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D   +    +    I   GR  R    
Sbjct: 323 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ--PENYQHRIGRSGRFGRKG-- 378

Query: 685 KVILYADTITKSIQLAI 701
             I +     + +   I
Sbjct: 379 VAINFVTREDERMLFDI 395


>gi|288799847|ref|ZP_06405306.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288333095|gb|EFC71574.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 445

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 14/131 (10%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R+++    K   +D+ + L  + I    MHS++   ER E++   + G+ DVLV  +++
Sbjct: 228 QRVIIFSGKKDKVKDINKALLSKKINSGAMHSDLSQAERDEVMFKFKAGQIDVLVATDIV 287

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI---------LYADTI 693
             G+DI +  +V   D   +         I  IGR AR                 Y   I
Sbjct: 288 SRGIDIDDIRMVINYDVPHDV-----EDYIHRIGRTARADRDGKAITLVSDEDMFYFQQI 342

Query: 694 TKSIQLAIDET 704
            + ++  ID+T
Sbjct: 343 EQFLEKTIDKT 353


>gi|159037848|ref|YP_001537101.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157916683|gb|ABV98110.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
           CNS-205]
          Length = 574

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 13/161 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +     ++   ++   + LTE +  R  R   +H  +   +R  ++  LR G  D+L+ 
Sbjct: 256 IESPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLMA 315

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   GLD+ +   V   D        +  S +  IGR  R     V I  A+     +
Sbjct: 316 TDVAARGLDVEQLSHVVNYDV-----PSAPESYVHRIGRVGRAGREGVAITLAEPRAHRM 370

Query: 698 QLAIDETTRRR-------EKQLEHNKKHNINPQSVKEKIME 731
              I+  T +R             N++  +   +++E ++E
Sbjct: 371 LKTIERVTGQRITIDKIPTVADLRNRRLELTQAALRESLLE 411


>gi|45361237|ref|NP_989196.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Xenopus
           (Silurana) tropicalis]
 gi|38649000|gb|AAH63374.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Xenopus
           (Silurana) tropicalis]
          Length = 699

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 60/170 (35%), Gaps = 11/170 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD------EI 575
              T++ SAT         +  + E I    G V    E  + +    +  D      ++
Sbjct: 417 VRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDL 476

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +
Sbjct: 477 LNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 536

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 537 LVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 581


>gi|148262453|ref|YP_001229159.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146395953|gb|ABQ24586.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 453

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 15/191 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIR-SARTQVEDVYDEINLA 578
            T++ +AT     + +    +++  +R            +E R      ++     +   
Sbjct: 180 QTLLFTAT-MDDVMAKLAQRLLKDPVRIEIAGQKTSHDQIEQRLHVVDNLQHKNRMLQHL 238

Query: 579 AQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              G   + ++   TKR A+ L   L+ +      +H ++    R + I ++R GK  +L
Sbjct: 239 IADGNLTKAIIFSATKRDADMLARELHAQGHAAAALHGDMTQNARNKTITNMRRGKVRLL 298

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLD+     V   D  K          +  IGR  R   S + +   ++   
Sbjct: 299 VATDVAARGLDVTGISHVINFDLPKF-----AEDYVHRIGRTGRAGASGIAISFVSLNDI 353

Query: 697 IQLAIDETTRR 707
               +D   R 
Sbjct: 354 NY--LDRIERY 362


>gi|322818320|gb|EFZ25769.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 631

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 19/201 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVEDVYDEINLA 578
            T++ SAT  +   +  +  +        G V    E     +R       D  + +   
Sbjct: 322 QTLLYSATFPTEIQQLAREFLHRHYFLQVGRVGSTTENITQDVRWVED--NDKREHLLRI 379

Query: 579 AQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +     IL+ V  KR A+ L  +L    +    +H +    ER E ++  +     VL
Sbjct: 380 LHENQNQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMFKSASCQVL 439

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYAD---- 691
           V  ++   GLDIP+  +V   D        +    +  IGR  R     + I + +    
Sbjct: 440 VATDVASRGLDIPDVSIVIQYD-----MPSNIDDYVHRIGRTGRAGKVGRAISFFNEKNR 494

Query: 692 TITKSIQLAIDETTRRREKQL 712
            I   +   ++ET +   +Q+
Sbjct: 495 NIVDDLVPLLNETHQNVLQQI 515


>gi|319947383|ref|ZP_08021615.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
           700641]
 gi|319746323|gb|EFV98584.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
           700641]
          Length = 524

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 94/262 (35%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT        G   +++ + + +      T LVD    IR    +  D    + 
Sbjct: 176 QTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVD-QYYIRVKEQEKFDTMTRLM 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD + G  DVL
Sbjct: 235 D-VDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S +  IGR  R   S   I +      
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348

Query: 696 SIQLAIDETTRRREK-------QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                I+  T++R K       +     K  +  + ++            E        +
Sbjct: 349 GYLQIIENLTKKRMKGLKPASAEEAFQAKKQVALKKIERDFANEEIRSNFEKFGKDARQL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            ++    S +    ++ SL  Q
Sbjct: 409 ASEF---SPEDLAMYILSLTVQ 427


>gi|189211147|ref|XP_001941904.1| ATP-dependent RNA helicase DBP3 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187977997|gb|EDU44623.1| ATP-dependent RNA helicase DBP3 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 601

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 71/189 (37%), Gaps = 19/189 (10%)

Query: 521 LRPTTIVVSAT--PGSWELEQCQGIIVEQI---------IRPTGLVDPPVEI---RSART 566
            +  T++ +AT  P   +L         +I         +R    +   VE+   R+   
Sbjct: 362 KKRQTLMFTATWPPSVRDLASTFMNSPVKITIGDNQSGELRANVRIKQVVEVVDPRAKEQ 421

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           ++  +  +      +  RIL+  L K+ A  +  ++  +  RV  +H ++   +R   + 
Sbjct: 422 RLLQLLKQYQSGKNKDDRILVFCLYKKEAVRIENFIRMKGFRVGGIHGDLSQEKRSASLA 481

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             + G   +LV  ++   GLDIP   +V  +      F  +    +  IGR  R     +
Sbjct: 482 AFKEGHVPLLVATDVAARGLDIPAVKVVINV-----TFPLTAEDYVHRIGRTGRAGKEGL 536

Query: 687 ILYADTITK 695
            +   T   
Sbjct: 537 AITLFTDHD 545


>gi|168026095|ref|XP_001765568.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683206|gb|EDQ69618.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L       V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPQKLQVGVFSATMPPEALEITRKFMNKPVKILVKRDELTLEGIKQFYVNVDRE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ + T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLDTLCDLYETLAIT--QSVIFINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 377 GVAINFVTKEDERMLQDIQR 396


>gi|310824350|ref|YP_003956708.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|309397422|gb|ADO74881.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 579

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 74/188 (39%), Gaps = 10/188 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT G       Q ++ + +   + P+G        R    +  + Y  +     
Sbjct: 177 QTLLFSATLGHNVTRFAQEVLRKPVRVEVTPSGTPAARAVQRLYEVEASEKYPLLLSLLA 236

Query: 581 QG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +  L +L+   T+  AE + E L     +   +H++    +R + +   R G++  LV  
Sbjct: 237 KDQLSVLVFTRTRERAEKVQEVLKRAGHKTAAIHADRTQGQRRQALEGFRRGQYRCLVAT 296

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQ 698
           ++   GLD+ + G V   D        +    +  IGR AR   + +   +  +  +   
Sbjct: 297 DIASRGLDVEDIGHVINFD-----LPHAPEDYVHRIGRTARAGASGRASTFVTSRDEETV 351

Query: 699 LAIDETTR 706
            AI+   R
Sbjct: 352 RAIERIVR 359


>gi|218889170|ref|YP_002438034.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|218769393|emb|CAW25153.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 639

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 71/194 (36%), Gaps = 11/194 (5%)

Query: 521 LRPTTIVVSATPGSWELEQCQGII--VEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINL 577
            +   ++ SAT     ++    ++   E+I + P       +E R  R         +  
Sbjct: 183 HKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAH 242

Query: 578 AAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               G   ++L+   TK  A  L EYL +  +    +H       R + + D +     +
Sbjct: 243 LVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRI 302

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLDI +   V   +         +   +  IGR  R   S   I       
Sbjct: 303 LVATDIAARGLDIDQLPHVVNYE-----LPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 695 KSIQLAIDETTRRR 708
           + +  AI++ TR+R
Sbjct: 358 EKLLKAIEKMTRQR 371


>gi|194378748|dbj|BAG63539.1| unnamed protein product [Homo sapiens]
          Length = 657

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 66/187 (35%), Gaps = 12/187 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDV-----YDEI 575
              T++ SAT         +  + E I    G V    E I      VED+       +I
Sbjct: 370 VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDI 429

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A       L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +
Sbjct: 430 LGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 489

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   +   GLDI     V   D             +  IGR  R  N  +        K
Sbjct: 490 LVATAVAARGLDISNVRHVINFD-----LPSDIEEYVHRIGRTGRVGNLGLATSFFN-EK 543

Query: 696 SIQLAID 702
           ++ +  D
Sbjct: 544 NMNITKD 550


>gi|194364258|ref|YP_002026868.1| DEAD/DEAH box helicase domain-containing protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194347062|gb|ACF50185.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 471

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 82/240 (34%), Gaps = 20/240 (8%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D        +SG+          + + GF LPS    R L   +       T++ SAT
Sbjct: 137 LIDHLERRSIDLSGIELLVLDEADRMLDMGF-LPSIK--RIL--AKLPKQNRQTLLFSAT 191

Query: 532 --PGSWELEQCQGIIVEQI-IRPTGLVDPPVE--IRSART--QVEDVYDEINLAAQQGLR 584
                 +L        EQI + P   V   +   +       + + +   +        +
Sbjct: 192 FEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDGGRKRDLLLHLLAQ--DSREQ 249

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+   TK  ++ L  +L +  I+   +H      +R+  + D + G+  VLV  ++   
Sbjct: 250 TLVFARTKHGSDKLAAFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTVLVATDIAAR 309

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           G+DI E   V   D             +  IGR  RN  +   I         +  AI  
Sbjct: 310 GIDINELPKVINFDLPMV-----AEDYVHRIGRTGRNGATGQAISLVAQDEVKLLRAITR 364


>gi|86358753|ref|YP_470645.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
 gi|86282855|gb|ABC91918.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
          Length = 560

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 74/215 (34%), Gaps = 18/215 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPT 552
            + + GF      D R  +  +    +  T++ SAT      +     +V+ +   + P 
Sbjct: 181 QMLDLGFV----HDLR--KIAKLVPKKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPP 234

Query: 553 GLVDPPVE--IRSARTQVEDVYDEINLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRV 609
           G     VE  +     + +          +    R ++ + TK  AE L ++L      V
Sbjct: 235 GKAADKVEQYVHFVGGKNDKTELLRKSLTENPDGRAIVFLRTKHGAEKLMKHLDNIGYSV 294

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H      +R   ++  R G    L+  ++   G+DIP    V   D           
Sbjct: 295 ASIHGNKSQGQRERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYD-----LPEVPD 349

Query: 670 SLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           + +  IGR AR     + I +       +   I+ 
Sbjct: 350 AYVHRIGRTARAGRDGIAIAFCAPDEAKLLRDIER 384


>gi|59711051|ref|YP_203827.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri ES114]
 gi|59479152|gb|AAW84939.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 413

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 67/192 (34%), Gaps = 18/192 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVEDVYDEINLAA- 579
           R  T + SAT    E    +G   + +  P  +   P    R   TQ     D +     
Sbjct: 180 RKQTFLFSAT---LEGRGVEGFTADLLNEPAEINAEPSRRERKKITQWYHRADNMAHKID 236

Query: 580 -------QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                  +Q  R ++ V T+    +L  +L    I   ++  E+    R   I   R G 
Sbjct: 237 LLKNILTEQAERSIVFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAISRFRDGT 296

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            +VL+  ++   G+D+P+   V   D  +     +    +  IGR AR       +   +
Sbjct: 297 VNVLIATDVAARGIDLPDVSHVINFDMPR-----TADVYLHRIGRTARAGKKGNAVSLIE 351

Query: 692 TITKSIQLAIDE 703
              + +   +  
Sbjct: 352 AHDQPMMERVGR 363


>gi|89894700|ref|YP_518187.1| hypothetical protein DSY1954 [Desulfitobacterium hafniense Y51]
 gi|89334148|dbj|BAE83743.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 537

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 93/267 (34%), Gaps = 32/267 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVE--IRSARTQVE-DVYDEIN 576
             ++ SAT    E+++     + Q     +    L  P +E      R +++ D    I 
Sbjct: 190 QVMLFSAT-MPPEIKKLAQNYMSQPKSVAVSRDELTVPLIEQVFYETRDKIKVDALCRII 248

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G   ++   TKR  ++L   L  R      +H ++   +R  +++  R GK ++L
Sbjct: 249 DMEDIGQ-AIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELL 307

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLDI     V   D       +   S +  IGR  R       +   +  + 
Sbjct: 308 VATDVAARGLDIDNVTHVINFD-----IPQDPESYVHRIGRTGRAGRKGQAITLVSSREY 362

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
            QL + E    R  +             +  K +  +  +    A      +        
Sbjct: 363 RQLRLIE----RLIK-----------TRIVRKELPTLADVSERQAENLKNQLVKILQRSH 407

Query: 757 KKKGKAHLKSLRKQ---MHLAADNLNF 780
               ++ + SL ++   M +AA  L F
Sbjct: 408 LGTYRSIVGSLLEEYDSMDVAAAALKF 434


>gi|46116580|ref|XP_384308.1| hypothetical protein FG04132.1 [Gibberella zeae PH-1]
 gi|91206540|sp|Q4IF76|DBP2_GIBZE RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 555

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 71/185 (38%), Gaps = 16/185 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E+       ++  I+             +   VE+ +   + + +   
Sbjct: 314 QTLMWSAT-WPKEVRALASDFLQDFIQVNIGSMELAANHRITQIVEVVTEMEKRDRMIKH 372

Query: 575 INLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +    +    +IL+ V TKR+A+++T +L +       +H + +  ER  ++   + GK 
Sbjct: 373 MEKVMENKENKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKS 432

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+     V   D     +  +    I  IGR  R       +   T 
Sbjct: 433 PIMVATDVASRGIDVRNITHVLNYD-----YPNNSEDYIHRIGRTGRAGAMGTAITLFTT 487

Query: 694 TKSIQ 698
               Q
Sbjct: 488 DNQKQ 492


>gi|197335121|ref|YP_002155200.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri MJ11]
 gi|197316611|gb|ACH66058.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri MJ11]
          Length = 413

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 76/216 (35%), Gaps = 27/216 (12%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVEDVYDEINLAA- 579
           R  T + SAT    E    +G   + +  P  +   P    R   TQ     D +     
Sbjct: 180 RKQTFLFSAT---LEGRGVEGFTADLLNEPAEINAEPSRRERKKITQWYHRADNMAHKID 236

Query: 580 -------QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                  +Q  R ++ V T+    +L  +L    I   ++  E+    R   I   R G 
Sbjct: 237 LLKSILKEQAERSIVFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAIARFRDGT 296

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            +VL+  ++   G+D+P+   V   D  +     +    +  IGR AR       +   +
Sbjct: 297 VNVLIATDVAARGIDLPDVSHVINFDMPR-----TADVYLHRIGRTARAGKKGNAVSLIE 351

Query: 692 TITKSIQLA----IDETTRRREKQLEHNKKHNINPQ 723
              + +       I E    +E+ +E      + P+
Sbjct: 352 AHDQPMMERVGRYIKEDEIIKERFIE-----GLKPK 382


>gi|126727175|ref|ZP_01743012.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2150]
 gi|126703603|gb|EBA02699.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2150]
          Length = 574

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 66/195 (33%), Gaps = 21/195 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR-------------PTGLVDPPVEIRS--ARTQV 568
            T+  SAT    E+E+     +   ++               GL+    + R   A+ + 
Sbjct: 180 QTLFFSATMAP-EIERITNTFLSAPVKVEVARAATTSETITQGLIWHEPKRREFGAKDKR 238

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             +   I    ++    ++    K   + + + L +       +H ++    R++++   
Sbjct: 239 NILRATIEAEGEKCTNAIIFCNRKVEVDIVAKSLKKHGYNAEPIHGDLDQSHRMKVLNGF 298

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G+   L   ++   GLDIP    V   D             +  IGR  R   +    
Sbjct: 299 REGEIRFLCASDVAARGLDIPNVSHVFNFDVPG-----HAEDYVHRIGRTGRAGRTGTAF 353

Query: 689 YADTITKSIQLAIDE 703
              T   + QLA  E
Sbjct: 354 TIATPNDAKQLAAVE 368


>gi|308807515|ref|XP_003081068.1| DEAD-box protein abstrakt (ISS) [Ostreococcus tauri]
 gi|116059530|emb|CAL55237.1| DEAD-box protein abstrakt (ISS) [Ostreococcus tauri]
          Length = 1030

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 90/266 (33%), Gaps = 35/266 (13%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P + E      LE    I +         +D  VEIR    +   V + + 
Sbjct: 513 QTVMFSATFPHTMEALARAALENPVEIQIGGKSVVNSDIDQVVEIRPEEDRFLRVLELLG 572

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              ++G +I++ V ++  A+   + L +       +H   +  +R   I D +    ++L
Sbjct: 573 EWCERG-KIIIFVASQDKADSTFKELLKSGYPCLSLHGSKEQSDRHSTISDFKSDVCNIL 631

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA-----D 691
           V  ++   GLD+ +  LV   D             +  +GR  R       +       +
Sbjct: 632 VATSVAARGLDVKDLRLVINYDT-----PNHLEDYVHRVGRTGRAGQKGTAVTFISEDEE 686

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                +  A+ ++                  Q+V   +  + D    +       +  + 
Sbjct: 687 KFAPDLVKALKDSK-----------------QTVPRDVQRLADEFTRKRKEGLVGAAGSG 729

Query: 752 QLSLSKKKGKAHLKSLRKQMHLAADN 777
                 K  +    +L+KQ   AA  
Sbjct: 730 FGGSGFKFDQGEHDALKKQKRDAARA 755


>gi|90413176|ref|ZP_01221172.1| putative ATP-dependent RNA helicase SrmB [Photobacterium profundum
           3TCK]
 gi|90325867|gb|EAS42319.1| putative ATP-dependent RNA helicase SrmB [Photobacterium profundum
           3TCK]
          Length = 419

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 83/209 (39%), Gaps = 13/209 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEI---- 575
           R  +++ SAT  G    E  + I+ E + +          +I     + +D+  ++    
Sbjct: 179 RRQSLLFSATLEGKGVREFSETILKEPVEVNSAPSRRERKKIHQLYLRCDDMGHKLALLE 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +   Q  R ++ V T+     L + L   N++  ++  E+  L R   I   R G  ++
Sbjct: 239 QILKHQAERSIVFVKTRDRLATLRDQLASMNVKCSWIQGEMAQLSRNNAIARFRDGDVNI 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   G+D+P+   V   D  +     +    +  IGR AR     + +       
Sbjct: 299 LIATDVAARGIDLPDISHVINFDMPR-----TADVYLHRIGRTARAGKKGIAISLVEAHD 353

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQS 724
             Q  I+  +R  E+++     + + P S
Sbjct: 354 --QAMIERVSRYMEEEVPERFINGLRPAS 380


>gi|256821317|ref|YP_003145280.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256794856|gb|ACV25512.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 434

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 104/284 (36%), Gaps = 38/284 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L + + ++++ F D        +  +   +  R     + GF LPS       R  
Sbjct: 130 TPGRLLDLMEQNAVRFND--------LEFLVLDEADRM---LDMGF-LPSIK-----RII 172

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE----------IRSART 566
                +  T++ SAT       +    I +Q +    LV+              I     
Sbjct: 173 GKLPKKRQTLLFSAT-----FSESIKAISQQFLTNPSLVETEQTNTTAATVKQWIHPVDK 227

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + +       +   +  ++L+ V T+R A  L+  L +R I+   +H       R   + 
Sbjct: 228 KQKPALLSYLIGHHRWDQLLVFVRTRRGANKLSVDLEKRGIKATAIHGGKSQGARNRALS 287

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + + GK  VLV  ++   GLDI +  LV   D             I   GRA     +  
Sbjct: 288 EFKSGKVTVLVATDVAARGLDIEQMPLVINYDLP--NVAEDYVHRIGRTGRAGEKGTAIS 345

Query: 687 ILYADTITK--SIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
           ++ AD +    +IQ  I +   RR    ++  +H + P++  + 
Sbjct: 346 LVSADEVDDLRAIQDLIRKPLERRFV-EDYEPQH-VLPETPLKS 387


>gi|221107105|ref|XP_002164714.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 367

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 62/173 (35%), Gaps = 27/173 (15%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT                +E+     + ++ I +    V+   ++         
Sbjct: 208 QVLLYSATFPYSVKEFKDKYLSKPYEINLMDELTLKGITQYYAFVEEKQKVH-------- 259

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   + +  E L   + +      Y+HS ++   R  +  D R 
Sbjct: 260 CLNTLFSKLQVNQSI-IFCNSVQRVELLARKITQLGYSCFYIHSRMQQSHRNRVFHDFRS 318

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           G+   LV  +L   G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 319 GQCRNLVCSDLFTRGIDIQAVNVVINFD-----FPKNSETYLHRIGRSGRFGH 366


>gi|209694151|ref|YP_002262079.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238]
 gi|208008102|emb|CAQ78243.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238]
          Length = 416

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 68/192 (35%), Gaps = 18/192 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVEDVYDEINLAAQ 580
           R  T + SAT    E     G   + +  P  +V  P    R   TQ     D +    +
Sbjct: 180 RKQTFLFSAT---LEGRGVDGFTADLLNEPAKIVAEPSRRERKKITQWYHRADSLPHKIE 236

Query: 581 --------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                   Q  R ++ V T+    +L  +L    I   ++  E+    R   I   R GK
Sbjct: 237 LLKSILTNQTERAIVFVKTRERLAELRGHLETAKISCAWLQGEMPQESRNNAISRFRDGK 296

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            +VL+  ++   G+D+P+   V   D  +     +    +  IGR AR       +   +
Sbjct: 297 VNVLIATDVAARGIDLPDVSHVINFDMPR-----TADVYLHRIGRTARAGKKGNAVSLIE 351

Query: 692 TITKSIQLAIDE 703
              + +   +  
Sbjct: 352 AHDQKMMERVGR 363


>gi|163738820|ref|ZP_02146234.1| ATP-dependent RNA helicase, putative [Phaeobacter gallaeciensis
           BS107]
 gi|163741469|ref|ZP_02148860.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10]
 gi|161385203|gb|EDQ09581.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10]
 gi|161388148|gb|EDQ12503.1| ATP-dependent RNA helicase, putative [Phaeobacter gallaeciensis
           BS107]
          Length = 516

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 62/198 (31%), Gaps = 23/198 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR-------------PTGLVDPPVEIRSART--QV 568
            T+  SAT    E+E+     +    R               G+V      R      + 
Sbjct: 180 QTLFFSATMAP-EIERITNTFLSAPARVEVARQATTSENITQGVVLFKASRRDREGSEKR 238

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + +   I+   ++    ++    K   + + + L +       +H ++   +R + +   
Sbjct: 239 KLLRHLIDQEGEKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGF 298

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G    LV  ++   GLD+P    V   D             +  IGR  R       +
Sbjct: 299 REGSLRFLVASDVAARGLDVPSVSHVFNFDV-----PSHAEDYVHRIGRTGRAGRDGSAM 353

Query: 689 YADTITKSIQLAIDETTR 706
                    +  +++  R
Sbjct: 354 MICVPKD--EKNLEDIER 369


>gi|148703756|gb|EDL35703.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Mus
           musculus]
          Length = 321

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 92  DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 151

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 152 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 198


>gi|3775999|emb|CAA09202.1| RNA helicase [Arabidopsis thaliana]
          Length = 224

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 6/142 (4%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
             R+ + D+         +    L+ V TKR A+ L  +L         +H +    ER 
Sbjct: 1   DKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQERE 60

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             +R  + G+  +LV  ++   GLDIP    V   D             +  IGR  R  
Sbjct: 61  VALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAG 115

Query: 683 NSKVIL-YADTITKSIQLAIDE 703
            S +   + +     +  ++ E
Sbjct: 116 KSGIATAFFNENNAQLARSLAE 137


>gi|78223770|ref|YP_385517.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
 gi|78195025|gb|ABB32792.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
          Length = 451

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 15/203 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI----RSARTQVEDVYDEINL 577
           +  T++ SAT         Q I+ + +    G V P V +          ++       L
Sbjct: 175 KRQTLLFSATMPIDIRVLAQEILRDPVTVQVGTVAPAVTVTHALYPVEQHLKTPLLLELL 234

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                  +L+   TK  A+ L E + +   +   +   +    R   +   R G F +LV
Sbjct: 235 RHTDTESVLIFTRTKHRAKRLGEQMEKAGYKAASLQGNLSQNRRQAALDGFRDGTFQILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   G+D+ +   V   D        +  + I  IGR  R   S        +   +
Sbjct: 295 ATDIAARGIDVSQVSHVINYD-----IPDTAEAYIHRIGRTGRAARSGDAFTMVTSEDTA 349

Query: 697 IQLAIDET-----TRRREKQLEH 714
           +   I+        RR     ++
Sbjct: 350 MVRTIERKLNTSLERRTMAGFDY 372


>gi|282878371|ref|ZP_06287163.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
 gi|281299557|gb|EFA91934.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
          Length = 558

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 18/195 (9%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            TI+ SAT P    EL +       ++          ++  +           I    +Q
Sbjct: 183 QTIMFSATMPDKINELARTLLKNPVEVKLAVSKPAEKIKQTAYVCHETQKLGIIKKIFKQ 242

Query: 582 G--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G   R+++    K+  + +++ L    I    MHS++   +R E++   + G+ DVLV  
Sbjct: 243 GDLKRVIIFCGAKQKVKQVSQALQRMKINCGEMHSDLDQAQRDEVMFQFKSGQIDVLVAT 302

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV---------ILYA 690
           ++L  G+DI +  +V   D             +  IGR AR               I Y 
Sbjct: 303 DILSRGIDIDDIAMVINYDV-----PHDAEDYVHRIGRTARADRDGAAITLVSKDDIYYF 357

Query: 691 DTITKSIQLAIDETT 705
             I K ++  +++  
Sbjct: 358 QQIEKFLEKEVEKVE 372


>gi|288558810|sp|P54824|DDX6_XENLA RecName: Full=ATP-dependent RNA helicase ddx6; AltName:
           Full=ATP-dependent RNA helicase p54; Short=P54H;
           Short=Xp54; AltName: Full=DEAD box protein 6
 gi|213623790|gb|AAI70228.1| P54H protein [Xenopus laevis]
 gi|213623792|gb|AAI70230.1| P54H protein [Xenopus laevis]
          Length = 481

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 68/194 (35%), Gaps = 28/194 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT                +E+   + + ++ + +    V    ++         
Sbjct: 271 QILLYSATFPLSVQKFMTLHLQKPYEINLMEELTLKGVTQYYAYVTERQKVH-------- 322

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   + +  E L + + +      Y+H++++   R  +  D R 
Sbjct: 323 CLNTLFSRLQINQSI-IFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRN 381

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D  K        + +  IGR+ R  +  + +  
Sbjct: 382 GLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINL 436

Query: 691 DTITKSIQ-LAIDE 703
            T        +I+E
Sbjct: 437 ITYDDRFNLKSIEE 450


>gi|168063959|ref|XP_001783934.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664528|gb|EDQ51244.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 18/200 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L       V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPQKLQVGVFSATMPPEALEITRKFMNKPVKILVKRDELTLEGIKQFYVNVDRE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ + T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLDTLCDLYETLAIT--QSVIFINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 377 GVAINFVTKEDERMLQDIQR 396


>gi|143361556|sp|Q5QMN3|RH20_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 20
          Length = 494

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 15/187 (8%)

Query: 524 TTIVVSAT-PGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E        +  + II  + ++    +   VEI S  +Q  +    +
Sbjct: 271 QTLYWSATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILS-ESQKYNKLVNL 329

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G RIL+ + TK+  + +T  L         +H +    ER  ++ + + GK  +
Sbjct: 330 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPI 389

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  S    +  IGR  R        Y      
Sbjct: 390 MTATDVAARGLDVKDVKYVINYD-----FPGSLEDYVHRIGRTGRAGAKGTA-YTFFTAA 443

Query: 696 SIQLAID 702
           + + A D
Sbjct: 444 NARFAKD 450


>gi|71895253|ref|NP_001025971.1| ATP-dependent RNA helicase DDX3X [Gallus gallus]
 gi|60098425|emb|CAH65043.1| hypothetical protein RCJMB04_2a4 [Gallus gallus]
          Length = 651

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 425 DLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 484

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 485 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 531


>gi|143456452|sp|Q0DB53|RH52A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52A
 gi|51090883|dbj|BAD35456.1| putative DEAD-box protein 3 [Oryza sativa Japonica Group]
 gi|222635845|gb|EEE65977.1| hypothetical protein OsJ_21891 [Oryza sativa Japonica Group]
          Length = 602

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 85/247 (34%), Gaps = 25/247 (10%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            V+ S V++  I  +   +  R     + GF     +     R          T++ SAT
Sbjct: 232 MVERSKVSLEAIKYLVMDEADRM---LDMGFE--PQIRKIVERMNMPRKSVRQTMLFSAT 286

Query: 532 PGSWELEQCQG-------IIVEQIIRPTGLVDPPVEIRS---ARTQVEDVYDEINLAAQQ 581
                             I V ++   T L+   VE+ S    R  + D+    ++    
Sbjct: 287 FPPEIQRLASDFLSNYIFITVGRVGSSTDLIMQKVELLSDGEKRGYLLDLLQRQSVGVAN 346

Query: 582 GLR----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                   L+ V TKR A+ L  +LY +      +H +    ER   +R  + G   ++V
Sbjct: 347 SKLQQPLTLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMV 406

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLD+P    V   D  K     S    +  IGR  R   +     +      S
Sbjct: 407 ATDVASRGLDVPNVAHVINYDLPK-----SIEDYVHRIGRTGRAGKAGSATAFFTESDHS 461

Query: 697 IQLAIDE 703
           +   + E
Sbjct: 462 LAKGLLE 468


>gi|50312211|ref|XP_456137.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660243|sp|Q6CIV2|DBP2_KLULA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49645273|emb|CAG98845.1| KLLA0F23716p [Kluyveromyces lactis]
          Length = 554

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 76/198 (38%), Gaps = 16/198 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT    E++Q     +   I+          +  +   VE+ +   + + +   
Sbjct: 293 QTLMWSAT-WPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKH 351

Query: 575 INLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +  A+Q Q  +I++   TKR  +++T YL         +H +    ER  ++ + R G+ 
Sbjct: 352 LETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRS 411

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+     V   D        +    +  IGR  R  ++   +   T 
Sbjct: 412 PIMVATDVAARGIDVKGINYVINYD-----MPGNIEDYVHRIGRTGRAGSTGTAISFFTE 466

Query: 694 TKSIQLAIDETTRRREKQ 711
                 A      R  KQ
Sbjct: 467 GNKSLGAALIKIMREAKQ 484


>gi|148232012|ref|NP_001083721.1| ATP-dependent RNA helicase ddx6 [Xenopus laevis]
 gi|1044938|emb|CAA63149.1| RNA helicase p54 [Xenopus laevis]
          Length = 481

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 68/194 (35%), Gaps = 28/194 (14%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT                +E+   + + ++ + +    V    ++         
Sbjct: 271 QILLYSATFPLSVQKFMTLHLQKPYEINLMEELTLKGVTQYYAYVTERQKVH-------- 322

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   + +  E L + + +      Y+H++++   R  +  D R 
Sbjct: 323 CLNTLFSRLQINQSI-IFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRN 381

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D  K        + +  IGR+ R  +  + +  
Sbjct: 382 GLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINL 436

Query: 691 DTITKSIQ-LAIDE 703
            T        +I+E
Sbjct: 437 ITYDDRFNLKSIEE 450


>gi|71026577|ref|XP_762954.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68349906|gb|EAN30671.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 707

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 82/250 (32%), Gaps = 38/250 (15%)

Query: 457 PPPTLFEYIPEDS-------LLFVDESHVTI-----PQISGMYRGDFHRKATLAEYGFRL 504
            P  L E++   +          +DE+   +     PQI  +       + TL  +    
Sbjct: 448 TPGRLLEFLSNGTIKLNRVSYFVMDEADRMLDMGFEPQIRKIVGQIRPDRQTLM-FSATW 506

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           PS +      F + N +           G  EL           IR         E+R  
Sbjct: 507 PSEIKRLASEFCKANSIYIQV-------GDLELTANPN------IRQNVEFPNSYEVRD- 552

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++ D    I        ++L+    K  A+ LT  L  R  +   +H      +R  I
Sbjct: 553 --KLFDFLGSIPPEK----KVLIFSDLKSFADQLTSALRYRRFKSASLHGNKTQAQRERI 606

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +   R G  +VLV  ++   GLDI +   V  LD  K     S    I  IGR  R  + 
Sbjct: 607 LNMFRSGDVNVLVATDVAARGLDIKDIDYVINLDVPK-----SLLDYIHRIGRTGRGNSK 661

Query: 685 KVILYADTIT 694
              L    I 
Sbjct: 662 GESLLYFPID 671


>gi|146340507|ref|YP_001205555.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278]
 gi|146193313|emb|CAL77329.1| Putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278]
          Length = 476

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 6/137 (4%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q  +V   +   A+     ++    KR    + + L +    V  +H ++    R+  + 
Sbjct: 230 QKREVLRRLLREAKDLKNAIIFCNRKRDVAIVHKSLQKHGFSVGALHGDMDQSARMAALD 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK- 685
             R G+  +LV  ++   GLDIPE   V   D             +  IGR  R   +  
Sbjct: 290 QFRKGELPLLVASDVAARGLDIPEVSHVFNFDV-----PHHSDDYVHRIGRTGRAGRTGT 344

Query: 686 VILYADTITKSIQLAID 702
            I       +    AI+
Sbjct: 345 AISIVSPPDQKSVAAIE 361


>gi|21243540|ref|NP_643122.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109105|gb|AAM37658.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 632

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     K +  +I+ 
Sbjct: 311 GLDVERISHVLNYD-----IPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIER 365

Query: 704 TTRR 707
            TR+
Sbjct: 366 ATRQ 369


>gi|330470231|ref|YP_004407974.1| dead/deah box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328813202|gb|AEB47374.1| dead/deah box helicase domain protein [Verrucosispora maris
           AB-18-032]
          Length = 563

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 8/142 (5%)

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           +  +VE +   I  A  +GL  ++   TKR A+ + E L  R   V  +H ++    R  
Sbjct: 254 SMNKVE-IVARILQAESRGL-TMIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARER 311

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +R  R GK D LV  ++   G+D+     V   D         + +    IGR  R   
Sbjct: 312 ALRAFRAGKIDTLVATDVAARGIDVTGVTHVINYDC-----PEDQDTYTHRIGRTGRAGA 366

Query: 684 SKV-ILYADTITKSIQLAIDET 704
           S V + + D         ID+T
Sbjct: 367 SGVAVTFVDWDDMPRWRIIDKT 388


>gi|328543973|ref|YP_004304082.1| DEAD/DEAH box helicase [polymorphum gilvum SL003B-26A1]
 gi|326413717|gb|ADZ70780.1| DEAD/DEAH box helicase domain protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 486

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 65/199 (32%), Gaps = 36/199 (18%)

Query: 524 TTIVVSAT---------------PGSWEL--EQCQGIIVEQIIRPTGLVDPP--VEIRSA 564
            T+  SAT               P   E+         V Q I   G VD     ++R  
Sbjct: 179 QTLFFSATMPPEIQRLTETFLQNPAKIEVAPRSSTAENVTQYIVAAGSVDFEKRAKLREL 238

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             + ED+ + I           +    KR    L   L      V  +H ++    R++ 
Sbjct: 239 LGEAEDLKNAI-----------VFCNRKRDVTTLFRSLERHGFNVGCLHGDMDQRTRMQT 287

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +   R G   +LV  ++   GLDIP+   V   D             +  IGR  R   S
Sbjct: 288 LESFRKGTLTLLVASDVAARGLDIPDVSHVFNFDVPI-----HAEDYVHRIGRTGRAGRS 342

Query: 685 KVILYADTITKSIQL-AID 702
            V     T   S  L AI+
Sbjct: 343 GVSYTLVTGEDSKYLSAIE 361


>gi|145636978|ref|ZP_01792642.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
 gi|145269836|gb|EDK09775.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
          Length = 415

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 90/252 (35%), Gaps = 34/252 (13%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +DE  V +         +  R   L   GF        R +R+    C 
Sbjct: 145 IDYV-KQGVIGLDEIQVVV-------LDEADRMFDL---GFI-------RDIRYLLRKCP 186

Query: 522 RPT---TIVVSATPGSWELEQCQGIIVE------QIIRPTGLVDPPVEIRSARTQVEDVY 572
            P    T++ SAT      E     + +      +  + TG      E+     Q +   
Sbjct: 187 APQARLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKE-ELFYPSNQDKMAL 245

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               +  +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G 
Sbjct: 246 LLTLMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGD 305

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
            D+LV  ++   GL I +   V   D         +   +  IGR  R   S V I +A 
Sbjct: 306 LDILVATDVAARGLHISDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFAC 360

Query: 692 TITKSIQLAIDE 703
                   AI+E
Sbjct: 361 EEYAMNLPAIEE 372


>gi|119477017|ref|ZP_01617298.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
 gi|119449824|gb|EAW31061.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
          Length = 431

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 63/173 (36%), Gaps = 20/173 (11%)

Query: 553 GLVDPPVE--IRSARTQVEDVYDEINLAAQQGL--------------RILLTVLTKRMAE 596
           GLV+ PVE  +  A T VE V   I    +                 ++L+   TK  A 
Sbjct: 198 GLVNNPVEISVSPANTTVESVQHWIYPVDKNQKSKLLIHLIQDNQWSQVLVFSRTKHGAN 257

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            L + L    I    +H       R + + D + GK  VLV  ++   GLDI +   V  
Sbjct: 258 KLAKQLDGAGINAAAIHGNKSQGARTKALADFKGGKVQVLVATDIAARGLDIEQLPHVVN 317

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK--SIQLAIDETTRR 707
            D             I   GRA     +  ++ AD   +   I+  I E  +R
Sbjct: 318 FDLP--NVPEDYVHRIGRTGRAGATGEAVSLVSADEFKQLSDIERLIGELLQR 368


>gi|323305025|gb|EGA58779.1| Dbp3p [Saccharomyces cerevisiae FostersB]
 gi|323337602|gb|EGA78847.1| Dbp3p [Saccharomyces cerevisiae Vin13]
          Length = 349

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 86/244 (35%), Gaps = 33/244 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         + E  V + Q++ +   +  R     E GF      ++      
Sbjct: 64  TPGRLLD--------LLQEGSVDLSQVNYLVLDEADRM---LEKGFE-----EDIKNIIR 107

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---------IRPTGLVDPPVEIRSARTQ 567
           E +  +  T++ +AT      E     +   I         +     +   VE+   R +
Sbjct: 108 ETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGK 167

Query: 568 VEDVYDEINLA---AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
              + + +       ++  ++L+  L K+ A  +   L      V  +H ++   +R + 
Sbjct: 168 ERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQA 227

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + + GK ++L+  ++   GLDIP    V  L      F  +    +  IGR  R   +
Sbjct: 228 LNEFKSGKSNLLLATDVAARGLDIPNVKTVINL-----TFPLTVEDYVHRIGRTGRAGQT 282

Query: 685 KVIL 688
               
Sbjct: 283 GTAH 286


>gi|242280284|ref|YP_002992413.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
 gi|242123178|gb|ACS80874.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 400

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 11/153 (7%)

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
            L   PV +   ++ ++ +++EI        R+L+ V TKR A  L + L +  +    +
Sbjct: 217 SLYSCPVPVHLKQSFLKVLFNEIEF-----ERVLVFVRTKRWARRLAQRLAKGGLAAADL 271

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H ++   +R   +   + G F VLV  +L   G+D      V   D        +    +
Sbjct: 272 HGDLSQSKRNRTLNGFKFGDFTVLVATDLAARGIDCSNISHVINYD-----MPDNVEIFV 326

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLA-IDET 704
              GR  R                 +LA I+E+
Sbjct: 327 HRTGRTGRADAKGTAYTFVADEDKARLAEIEES 359


>gi|258565305|ref|XP_002583397.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237907098|gb|EEP81499.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 521

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 5/127 (3%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            AQ+    L+  +       LTE      I  RY+ S+     R + +   R  K+ VL+
Sbjct: 156 RAQERKSTLVFCVDIEHVRCLTEKFRSYGIDARYITSQTSKEIRTQELDAFRSQKYPVLL 215

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              L  EG DIP    V +    +     S+  L+Q IGR  R    K   +   +  ++
Sbjct: 216 NCGLFTEGTDIPNIDCVVLARPTR-----SRNLLVQMIGRGLRLHPGKQDCHIIDMVAAL 270

Query: 698 QLAIDET 704
           Q  +  T
Sbjct: 271 QAGVVTT 277


>gi|166711384|ref|ZP_02242591.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 634

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     K +  +I+ 
Sbjct: 311 GLDVERISHVLNYD-----IPYDTESYVHRIGRTGRAGRTGDAILFVTPREKGMLRSIER 365

Query: 704 TTRR 707
            TR+
Sbjct: 366 ATRQ 369


>gi|170594503|ref|XP_001902003.1| ATP-dependent RNA helicase P62 [Brugia malayi]
 gi|158590947|gb|EDP29562.1| ATP-dependent RNA helicase P62, putative [Brugia malayi]
          Length = 587

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +Q  + L+ V  KR A+ LT  + ++      +H +    ER  ++ D + G+  +LV  
Sbjct: 429 EQHCKTLIFVGMKRTADWLTRLIRKKGYPALSLHGDKSQTERNFVMNDFKNGECSILVAT 488

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           ++   GLD+ +   V   D  K     +    I  IGR AR+  +       T + +
Sbjct: 489 DVAARGLDVNDIKYVINFDCPK-----NIEDYIHRIGRTARHDKTGTSYTLCTRSDA 540


>gi|255078160|ref|XP_002502660.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
 gi|226517925|gb|ACO63918.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
          Length = 611

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 6/139 (4%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVK 617
           +EI +   +++     +      G R ++   TKR  + +   +    +R    +H +  
Sbjct: 400 IEIVTEDQKLDRAIAVLKENLVDGARGIVFCGTKRRCDFIDRKMKAMGLRSAGAIHGDKD 459

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             ER   +   R GK  +LV  ++   GLDIP   +V + D     F       +  IGR
Sbjct: 460 QAEREYSLDLFRKGKAPLLVATDVAARGLDIPGVTVVLVYD-----FPLQVEDYVHRIGR 514

Query: 678 AARNVNSKVILYADTITKS 696
             R           T   +
Sbjct: 515 TGRAGKEGKAHCFFTEEDA 533


>gi|145630403|ref|ZP_01786184.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|260582313|ref|ZP_05850106.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
 gi|144984138|gb|EDJ91575.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|260094681|gb|EEW78576.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
          Length = 444

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 85/260 (32%), Gaps = 34/260 (13%)

Query: 470 LLFVDESHVTIPQISGMYRG-----DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +L  DE+   +    G            RK TL      L S      L  +    L   
Sbjct: 153 MLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL------LFSATLEGELLVDFAERLLND 206

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + V A P   E ++              +      +R                 ++  R
Sbjct: 207 PVKVDAEPSRRERKKINQWYYHADSNEHKIKLL---VRFIE-------------TEEVTR 250

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++   
Sbjct: 251 GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+DI +   V   D        S  + +  IGR AR       +            + + 
Sbjct: 311 GIDIDDVSHVMNFD-----LPYSADTYLHRIGRTARAGKKGTAVSFVEAHD--YKLLGKI 363

Query: 705 TRRREKQLEHNKKHNINPQS 724
            R  E+ L+      + P++
Sbjct: 364 KRYTEEILKARILAGLEPRT 383


>gi|50305859|ref|XP_452890.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660559|sp|Q6CT49|PRP28_KLULA RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|49642023|emb|CAH01741.1| KLLA0C15433p [Kluyveromyces lactis]
          Length = 539

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 92/252 (36%), Gaps = 24/252 (9%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         +D   + + Q++ +   +  +     ++GF      D       
Sbjct: 273 TPGRLLD--------CLDSHLLFLKQVNTLVLDEADKM---IDFGFE-----DQLTTILA 316

Query: 517 EWNCLRP-TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           +   +    T++ +AT      +   G + +      G  +   +I+     V D  +++
Sbjct: 317 KTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKL 376

Query: 576 NLAAQQ---GLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
            +  +      +  I++ +  KR A+ L + L E   R   +H      +R   +  LR 
Sbjct: 377 KILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRN 436

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           GK D+L+  ++   G+DIP   LV  L   K     S    +   GRA +   +   L  
Sbjct: 437 GKVDILIATDVAGRGIDIPNVSLVVNLQFPKS--FDSFVHRVGRTGRAGKTGTALTFLTE 494

Query: 691 DTITKSIQLAID 702
           +    ++    D
Sbjct: 495 EEDHSAMAKLFD 506


>gi|118400980|ref|XP_001032811.1| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila]
 gi|89287156|gb|EAR85148.1| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila SB210]
          Length = 481

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 74/203 (36%), Gaps = 19/203 (9%)

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLRPTTIV-VSATPGSWELE---QCQGIIVEQIIRPTG 553
               F L     + PLR    N      I  V   P   E E   +    +   +IR   
Sbjct: 248 INRQFILTGA--SFPLRIN--NEKGTQFIDKVFKRPICIESENFYKISEKMKHVVIRVND 303

Query: 554 LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
            ++         +  + + D+I        RI++ V ++  +E + ++L + +I+    H
Sbjct: 304 YLNA----NPNFSIQDILVDQI--KKSTSQRIIVFVQSQASSESIAKHLQDHDIKALSFH 357

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
           + + T +RI+ + +   GK  VLV  +L   GLD      V   D     F     S + 
Sbjct: 358 ANLNTEQRIDTLANFDEGKVRVLVSTDLASRGLDFQNVDHVIQFD-----FALDAVSFLH 412

Query: 674 TIGRAARNVNSKVILYADTITKS 696
            +GR  R   + V+         
Sbjct: 413 RVGRTCRMGRNGVVTSFVRENDE 435


>gi|77918349|ref|YP_356164.1| DEAD helicase family protein [Pelobacter carbinolicus DSM 2380]
 gi|77544432|gb|ABA87994.1| DEAD helicase family protein [Pelobacter carbinolicus DSM 2380]
          Length = 433

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 94/263 (35%), Gaps = 48/263 (18%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL--R 514
            P  L +Y+ + ++        ++  I  +   +  R     + GF      D R +  +
Sbjct: 130 TPGRLIDYVKQGAV--------SLGSIEALVIDEADRMF---DMGFI----RDLRYILRK 174

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS---ARTQVEDV 571
              ++     T++ SAT     +E     +          +   +++        Q+E+V
Sbjct: 175 LPAFDRR--QTMLFSATLSHRVMELAYEFMD---------LAEKIKVAPENVTAEQIEEV 223

Query: 572 YDEINLA-----------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
              ++              +    ++L V TKR AE LT  L     +   +  ++   +
Sbjct: 224 LYHVSRREKFALLLGLLKKEPAKCVMLFVNTKREAEHLTGRLQVNGFKAALISGDIPQKK 283

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ I+ + + G+   LVG ++   G+ +     V   D       + +   +  IGR AR
Sbjct: 284 RMRILDEFKEGRIHFLVGTDVASRGIHVDGVTHVINYD-----LPQDREDYVHRIGRTAR 338

Query: 681 NV-NSKVILYADTITKSIQLAID 702
                K I +AD         I+
Sbjct: 339 AGAAGKAISFADEDLVYYLADIE 361


>gi|86144589|ref|ZP_01062921.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
 gi|85837488|gb|EAQ55600.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
          Length = 443

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 64/172 (37%), Gaps = 12/172 (6%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR-----TQVEDVYDEI 575
            R  T++ SAT    E+      +++   R +  V     +   +       ++     +
Sbjct: 178 RRRQTLMFSATLDHAEVNDIANEMLDSPKRISVGVSNEQHLDITQKFYLCDHLDHKEAIL 237

Query: 576 NLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +   ++    ++++   T+   + LTE L E+ ++   +   +   +R  I+       +
Sbjct: 238 DRVIEEAEYRQVMIFTATRADTDRLTEKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVY 297

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV  ++   G+DIP    V   D  K          +  +GR  R  N  
Sbjct: 298 KILVTTDVASRGIDIPNVSHVINFDMPK-----HTEEYVHRVGRTGRAGNKG 344


>gi|323455397|gb|EGB11265.1| hypothetical protein AURANDRAFT_1175 [Aureococcus anophagefferens]
          Length = 433

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 79/235 (33%), Gaps = 24/235 (10%)

Query: 496 TLAEYGFR---------LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
            + + GF          LP+  + + L F          +  +   G+   E   G +  
Sbjct: 207 RMLDMGFEPQLRKIVAKLPAARERQTLMFSATFSPAVQQVARAYLDGARVAEVTVGRVGS 266

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDV---YDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
            +          +E R   +   D     + +      G + ++ V  K +A  +   L 
Sbjct: 267 SVAS--------IEQRLVFSPASDKRSKLELLLPVLAPGEKTIVFVQKKHVATWVKRELA 318

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +   R   +H +    +R   +   + G+ DVLV  ++   GLD+ +   V   D  ++ 
Sbjct: 319 KAKFRAEDIHGDRSQSQREAALESFKQGRCDVLVATDVAARGLDVNDVAHVVQFDLPQDD 378

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH 718
           F     + +  IGR  R   + V           +       R   + LE NK+ 
Sbjct: 379 F----DTYVHRIGRTGRAGKTGVATAFFVPGFEPKHGNQALHRDLLRMLEENKQQ 429


>gi|313235130|emb|CBY25002.1| unnamed protein product [Oikopleura dioica]
          Length = 653

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 61/167 (36%), Gaps = 10/167 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV---DPPVEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT            +   I    G V      +  R    Q  +   ++    +
Sbjct: 384 QTLMFSATFPKQIQALASDFLDNYIFLAVGRVGSTSANITQRFEYVQETEKVRKLCELLE 443

Query: 581 QGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            G     ++   TK+ A+ L  +L+ER  +   +H +    ER E +   + G+  +LV 
Sbjct: 444 NGQEMLTIVFTETKKGADYLDHFLHERGYQSTCIHGDRNQQEREEAVHLFKSGQTPILVA 503

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             +   GLDIP    V   D   E         +  IGR  R  N+ 
Sbjct: 504 TAVAARGLDIPNVRHVINFDLPSE-----IDEYVHRIGRTGRAGNTG 545


>gi|242215165|ref|XP_002473400.1| eukaryotic translation initiation factor 4A-like protein [Postia
           placenta Mad-698-R]
 gi|220727497|gb|EED81414.1| eukaryotic translation initiation factor 4A-like protein [Postia
           placenta Mad-698-R]
          Length = 501

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 71/217 (32%), Gaps = 35/217 (16%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT                +E+     + +  + +    V+   ++         
Sbjct: 218 QVMLFSATFPLIVKDFKDKHMKSPYEINLMDELTLRGVTQYYAYVEERQKVH-------- 269

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   +    E L + + E      Y H+++    R  +  D R 
Sbjct: 270 CLNTLFSKLQINQSI-IFCNSTNRVELLAKKVTELGYSCFYSHAKMLQSHRNRVFHDFRN 328

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +  + +  
Sbjct: 329 GVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNSETYLHRIGRSGRFGHLGLAINL 383

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
            T      L   E     E Q          PQ + +
Sbjct: 384 VTYEDRFNLYKIEQELGTEIQ--------PIPQYIDK 412


>gi|167748599|ref|ZP_02420726.1| hypothetical protein ANACAC_03372 [Anaerostipes caccae DSM 14662]
 gi|167651913|gb|EDR96042.1| hypothetical protein ANACAC_03372 [Anaerostipes caccae DSM 14662]
          Length = 478

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 68/188 (36%), Gaps = 14/188 (7%)

Query: 529 SATPGSWELEQCQGIIVEQII--RPTGLVDPPVEIR-----SARTQVEDVYDEINLAAQQ 581
           SAT      E     I E ++  +  G    P         S   + +   D +    + 
Sbjct: 183 SATLKPEIRELADEFIPEAVLVMQEAGEEQAPAITEKLYFASQERKYDTFLDILMD--EN 240

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
               ++   T+ M   L + L  + I    +H +++  ER++ +   R G F  L+  ++
Sbjct: 241 PQSCMIFCGTREMTNVLFQKLRRKRIFCGMLHGDMEQKERLKTVNAFRRGGFRFLIATDV 300

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
              G+D  E   V   D     F   K + +  IGR  RN NS   +   T      L  
Sbjct: 301 AARGIDFEEISHVVNYD-----FPTGKETYVHRIGRTGRNGNSGTAVSLVTEDDQRMLKQ 355

Query: 702 DETTRRRE 709
            ET   RE
Sbjct: 356 VETYLGRE 363


>gi|145588789|ref|YP_001155386.1| DEAD/DEAH box helicase domain-containing protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047195|gb|ABP33822.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 473

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 82/239 (34%), Gaps = 24/239 (10%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT--PGSWEL 537
           + Q+  +   +  R     + GF LP       L   +       T++ SAT  P   +L
Sbjct: 176 LSQVEILVLDEADRM---LDMGF-LPDLQRIIDLIPAQ-----RQTLLFSATFSPEIKKL 226

Query: 538 EQCQGIIVEQII-----RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL--RILLTVL 590
            Q        +           V   V + S+  +   +   +    + GL  + ++   
Sbjct: 227 AQSYLRTPVTVEVARQNAAADTVKQVVHMVSSGDKQRAIVKVLEARTRLGLSRQCIIFTN 286

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           ++     L   L    I+   +H +    ER   +   + G  + LV  ++   GLDIP+
Sbjct: 287 SRLGCAKLARALERDGIKAGAIHGDKSQGERTLTLDAFKSGAIEALVATDVAARGLDIPD 346

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
              V   +        +    I  IGR  R  +    I   D   K +   I++  +R+
Sbjct: 347 MPCVINHE-----LPYNAEDFIHRIGRTGRAGSKGDAIALVDASEKRLLDDIEKLMKRK 400


>gi|29375434|ref|NP_814588.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis V583]
 gi|227520091|ref|ZP_03950140.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX0104]
 gi|227554958|ref|ZP_03985005.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           HH22]
 gi|229546689|ref|ZP_04435414.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX1322]
 gi|229548784|ref|ZP_04437509.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           ATCC 29200]
 gi|293383725|ref|ZP_06629632.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|293388799|ref|ZP_06633292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|307267925|ref|ZP_07549313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|307271845|ref|ZP_07553113.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|307275145|ref|ZP_07556297.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|307286655|ref|ZP_07566741.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|307290778|ref|ZP_07570673.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|312901614|ref|ZP_07760885.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|312904406|ref|ZP_07763566.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|312907060|ref|ZP_07766056.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|312952884|ref|ZP_07771745.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|312978684|ref|ZP_07790411.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|29342894|gb|AAO80658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis V583]
 gi|227072435|gb|EEI10398.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX0104]
 gi|227175901|gb|EEI56873.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           HH22]
 gi|229306092|gb|EEN72088.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           ATCC 29200]
 gi|229308195|gb|EEN74182.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX1322]
 gi|291078801|gb|EFE16165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|291081956|gb|EFE18919.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|306498159|gb|EFM67681.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|306502133|gb|EFM71417.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|306508173|gb|EFM77291.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|306511351|gb|EFM80353.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|306515566|gb|EFM84093.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|310627045|gb|EFQ10328.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|310629187|gb|EFQ12470.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|310632233|gb|EFQ15516.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|311288391|gb|EFQ66947.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|311291302|gb|EFQ69858.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|315027034|gb|EFT38966.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
 gi|315029211|gb|EFT41143.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
 gi|315032370|gb|EFT44302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
 gi|315034370|gb|EFT46302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
 gi|315145185|gb|EFT89201.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
 gi|315148006|gb|EFT92022.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
 gi|315149607|gb|EFT93623.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
 gi|315153133|gb|EFT97149.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
 gi|315155152|gb|EFT99168.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
 gi|315158764|gb|EFU02781.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
 gi|315163093|gb|EFU07110.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
 gi|315165079|gb|EFU09096.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
 gi|315167890|gb|EFU11907.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
 gi|315171750|gb|EFU15767.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
 gi|315174909|gb|EFU18926.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
 gi|315574115|gb|EFU86306.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
 gi|315577243|gb|EFU89434.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
 gi|315581764|gb|EFU93955.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
 gi|327534429|gb|AEA93263.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF]
          Length = 536

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 13/192 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +        E + I+   +    ++   +RS   +  D+   +  
Sbjct: 197 QTLLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLD 256

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L   L  R  +   +H ++   +R+ ++R  + G  D+LV
Sbjct: 257 -VQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 315

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R       + +       
Sbjct: 316 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMG 370

Query: 697 IQLAIDETTRRR 708
               I+  T++R
Sbjct: 371 YLHVIENLTKKR 382


>gi|226943135|ref|YP_002798208.1| DEAD/DEAH box ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
 gi|226718062|gb|ACO77233.1| DEAD/DEAH box ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
          Length = 434

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 77/193 (39%), Gaps = 9/193 (4%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVE-IRSARTQVEDVYDEINLA 578
            T++ SAT      +   G++ +    +I  P        + +     + +       L 
Sbjct: 181 QTLLCSATFSEEIRQIATGLLRDPLTIEISAPNSAAPSVAQWMIPVDKKRKAELFLHLLE 240

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++  ++L+   T++  E L E L +R  R   +H ++    R+  +   +  +  VLV 
Sbjct: 241 RERWEQVLVFSRTRKGVERLAEELQQRGYRAGAIHGDLPQPARLRALEQFKADELQVLVA 300

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK--S 696
            ++   GLDI    LV  LD             I   GRA  +  +  ++ AD + +  +
Sbjct: 301 TDVAARGLDIQGLPLVVNLDLP--VAPEYYVHRIGRTGRAGASGEAISLVCADEVEQLAA 358

Query: 697 IQLAIDETTRRRE 709
           I+  I +   RRE
Sbjct: 359 IEALIRQLLPRRE 371


>gi|302867898|ref|YP_003836535.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302570757|gb|ADL46959.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 585

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +     ++   ++   + LTE +  R  R   +H  +   +R  ++  LR G  D+LV 
Sbjct: 260 VESPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVA 319

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   GLD+ +   V   D        +  S +  IGR  R     V I  A+     +
Sbjct: 320 TDVAARGLDVEQLTHVVNYDV-----PSAPESYVHRIGRVGRAGREGVAITLAEPREHRM 374

Query: 698 QLAIDETTRRR 708
              I+  T +R
Sbjct: 375 LKTIERVTGQR 385


>gi|269125451|ref|YP_003298821.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
           curvata DSM 43183]
 gi|268310409|gb|ACY96783.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
           43183]
          Length = 565

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 86/245 (35%), Gaps = 41/245 (16%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +           + H+ + QI  +   +  R     + GF LP          E
Sbjct: 151 TPGRLLD--------LARQGHLDLSQIQMLVLDEADRM---LDLGF-LPD--------IE 190

Query: 517 EWNCLRP---TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ----- 567
               L P    T++ SAT PG  E+       + +       V    E     TQ     
Sbjct: 191 RIIELVPAERQTMLFSATMPG--EIVALSRRYLNRPTNVRAEVHTESEATPQVTQHVFQT 248

Query: 568 --VE--DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
             ++  +V   +  A  +GL  ++   TKR  + +   L  R      +H ++   +R  
Sbjct: 249 HPMDKPEVLARLLQANGRGL-TMVFCQTKRACDRIAADLTRRGFAAAAVHGDLGQGQRER 307

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +R  R GK DVLV  ++   GLD+ +   V   +        S  + +  IGR  R   
Sbjct: 308 ALRAFRSGKVDVLVATDVAARGLDVEDVTHVINYEC-----PDSAETHVHRIGRTGRAGR 362

Query: 684 SKVIL 688
               +
Sbjct: 363 EGTAV 367


>gi|301120023|ref|XP_002907739.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262106251|gb|EEY64303.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 639

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 55/164 (33%), Gaps = 20/164 (12%)

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
                V+Q +      D    +     QV+D              IL+ V TKR A+ L 
Sbjct: 388 SASKDVKQTVEYIEQYDKEDYLVRFLNQVQDGL------------ILVFVETKRGADFLE 435

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           + L         +H +    ER + +   + G+  VLV  ++   GLDI     V   D 
Sbjct: 436 DMLCREGFPATSIHGDRSQREREQALASFKSGRTPVLVATDVAARGLDIDGVTQVINFD- 494

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
                  +    +  IGR  R  N     YA ++       I  
Sbjct: 495 ----LPNNIDDYVHRIGRTGRVGNVG---YALSMMNEKNRNIAR 531


>gi|227937255|gb|ACP43273.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Gorilla gorilla]
          Length = 660

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 67/187 (35%), Gaps = 12/187 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDV-----YDEI 575
              T++ SAT         +  + E I    G V    E I      VED+       ++
Sbjct: 373 VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDL 432

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +
Sbjct: 433 LGATGRDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 492

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   +   GLDI     V   D             +  IGR  R  N  +        K
Sbjct: 493 LVATAVAARGLDISNVRHVINFD-----LPSDIEEYVHRIGRTGRVGNLGLATSFFN-EK 546

Query: 696 SIQLAID 702
           ++ +  D
Sbjct: 547 NMNITKD 553


>gi|187251183|ref|YP_001875665.1| superfamily II DNA and RNA helicase [Elusimicrobium minutum Pei191]
 gi|186971343|gb|ACC98328.1| Superfamily II DNA and RNA helicase [Elusimicrobium minutum Pei191]
          Length = 502

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 82/217 (37%), Gaps = 15/217 (6%)

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           V+  +       + E +   +     +G   L+   T+   E L ++L + + +   +H 
Sbjct: 217 VEEEIISVIRDNKFETLVSLL---RAKGGSTLIFARTQTSVEWLDKHLTKESFKANSIHG 273

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
             +  +R   I+D R  KFD+LV  ++   GLDIP   LV   D             I  
Sbjct: 274 GYRQGKRNLAIKDFREEKFDILVATDVAARGLDIPHIQLVINYD-----LPLRAEDYIHR 328

Query: 675 IGRAARNVNSKVILYADTITK-----SIQLAID-ETTRRREKQLEHNKKHNINPQSVKEK 728
           IGR AR     + +   T         IQ  +  +   +R     H ++   N  S K +
Sbjct: 329 IGRTARAGAKGLAISFVTPNDKHLWNDIQKFLKGQDVVQRPIGRAHKEQKQ-NFASKKRE 387

Query: 729 IMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
             +  +          N     + L+ ++K+ +A +K
Sbjct: 388 NKKSQNQKKDFKKKKVNAEPKKEPLTFAEKRREARIK 424


>gi|160902853|ref|YP_001568434.1| DEAD/DEAH box helicase domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160360497|gb|ABX32111.1| DEAD/DEAH box helicase domain protein [Petrotoga mobilis SJ95]
          Length = 974

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 93/273 (34%), Gaps = 36/273 (13%)

Query: 225 FVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI 284
           ++  +D  +     P  D +  +   I+  I   R     +LL + +  V+++ S +   
Sbjct: 28  YLQDFDDEEEVFIYPDFDIFPFENLDISPNIKAKRMKTLHALLTKENVTVLTTFSSLIRY 87

Query: 285 GSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF-PSHL 343
              ++   +  ++K+GD+ +    +       Y   +     G +   G   + F P + 
Sbjct: 88  TLPKNE-FVSKKIKVGDTFDLDHNVP--YHLGYNLSEEVTSPGEYSKRGFVRDFFIPIY- 143

Query: 344 EDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEEL 403
            +   R+ ++   I+ IS F   + + I N++ ++I   S  +     L           
Sbjct: 144 -EQPVRIELWDEVIDRISFFDSYSQRSIENLKEVEIIPGSEIMKFDHNLEF--------Y 194

Query: 404 KMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
           + RL +        E   L+Q             +   I                 T+F 
Sbjct: 195 EERLKKYLNGTNEEEFLTLDQ-----------FNTLPGI------FYKDK-----NTIFS 232

Query: 464 YIPEDSLLFVDESHVTIPQISGMYRGDFHRKAT 496
           Y+ ED  +++      I   S   + ++    T
Sbjct: 233 YLNEDGDIYLINKEEIINSYSEKEKENYEMCDT 265



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 83/209 (39%), Gaps = 14/209 (6%)

Query: 513 LRFEEWNCLRP--TTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVE 569
           L+ E++  L      +++SATP    L      + +   I    +   P++    +   +
Sbjct: 580 LQKEKFKKLSDGVNFLMMSATPIPRTLYMSISGLRDISTISTPPVGRLPIQTFIGKYSDK 639

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRD 627
            V   I     +G +++      +   +L + L      I++  +H      E I+ I D
Sbjct: 640 LVRTAILREKSRGGQVIYIHNRVQELNELHKKLRTLIPEIKIAMVHGGTPKKEFIKSIND 699

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           L  G  D+L+   ++  G+DIP    + + D ++ G  +    L Q  GR  R+     +
Sbjct: 700 LYDGNIDLLLSTTIIENGIDIPNVNTLILDDPERYGISQ----LYQIKGRVGRSNRRAFV 755

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNK 716
            +        +    +T +R E   ++N+
Sbjct: 756 YFLFK-----KEVTPQTKKRLEAIKQYNE 779



 Score = 38.9 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 10/159 (6%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKT-FTMAKVIEAM--QRPA 196
           F+    Y  + DQ  +I ++++ +   R   +LL G +G GKT   M      +      
Sbjct: 436 FKETFPYVETPDQEKSIKEVMRDLESERPMDRLLSGDSGFGKTEVAMRAAFRTVVSNYQV 495

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           +++AP  ILA Q Y  FK       ++  +      Q E          E        I 
Sbjct: 496 LLLAPTTILAKQHYENFKQRMDSFGIKIALVTRHKTQKE-----KKDLFESIGKGQVDIV 550

Query: 257 RMRHSATRSLLE-RNDCIVVSSVSCIYGIGSVESYSQMI 294
              H+    LL+ +N  +V+      +G+   E + ++ 
Sbjct: 551 IGTHALLSDLLQVKNLGLVIVDEEQRFGVLQKEKFKKLS 589


>gi|268532748|ref|XP_002631502.1| Hypothetical protein CBG20666 [Caenorhabditis briggsae]
 gi|187022955|emb|CAP37633.1| hypothetical protein CBG_20666 [Caenorhabditis briggsae AF16]
          Length = 502

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 560 EIRSARTQVEDVYDEINLAAQQ---GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
           E      + + V + +N   QQ     ++++ V +K MA+ L+     + I  + +H   
Sbjct: 311 EFIPQENRFDRVCEIVNFLNQQFGNSYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGR 370

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
              +R   ++ L+ G+  +LV  +L   G+D+P+   V   D     F       +  +G
Sbjct: 371 SQSDRELSLKMLKTGEVQILVATDLASRGIDVPDITHVLNYD-----FPMDIEEYVHRVG 425

Query: 677 RAARNVNSK 685
           R  R     
Sbjct: 426 RTGRAGRKG 434


>gi|329765536|ref|ZP_08257112.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137974|gb|EGG42234.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 371

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 105/279 (37%), Gaps = 28/279 (10%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++   S+   D +H+ + +   M          + +  F L    + R +   
Sbjct: 52  TPGRLIDHLKRGSIELGDVTHIVLDEADTMLD-----MGFVDDIQFILDLAPEERVM--S 104

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            ++   PT I+  A      L+  +  +++        +D    +   R +++ + D I 
Sbjct: 105 LFSATMPTEILRLA---EEYLKNPKQFLLDADDLSGEGIDQAYLVIKDRDKMKYLIDFIK 161

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q   I++   TK    D+ +YL++       +  ++    R + +   R GK D+L
Sbjct: 162 PLKGQ---IIVFCSTKYRTRDVAKYLHQEKFDAVAIEGDMSQSRREQSMGKFRSGKVDIL 218

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+D+P   LV   D         + +    IGR AR       +       S
Sbjct: 219 VATDVASRGIDVPRVELVVNYDV-----PNQEMAYFHRIGRTARAGAKGRAI----TLVS 269

Query: 697 IQLAIDETTRRREKQL---EHNKKHNI---NPQSVKEKI 729
                D    +R+ ++   + NK+  I    P  +K ++
Sbjct: 270 YSSVGDWNLIKRQIKVPLTDLNKEMGIEISIPDPLKRQV 308


>gi|324504798|gb|ADY42068.1| ATP-dependent RNA helicase DDX41 [Ascaris suum]
          Length = 657

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 71/212 (33%), Gaps = 15/212 (7%)

Query: 493 RKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
           R   L E    L    +        +   +  T++ SAT         +  +V  II   
Sbjct: 374 RYLVLDEADRMLDMGFEEEIRTIFSFFKGQRQTLLFSATMPRKIQNFARSALVRAIIVNV 433

Query: 553 GL-------VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           G        V   +E   A  ++  + D +        R+L+    K   +++ EYL  +
Sbjct: 434 GRAGAASLNVLQEIEYVRADEKLTRILDCLQKTPP---RVLIFAEKKSDVDNIYEYLLVK 490

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            + V  +H      +R   +   R G+ DVLV  ++  +GLD      V   D       
Sbjct: 491 GVDVASLHGGKDQKDRHTGVDAFRRGEKDVLVATDVASKGLDFENIQHVINFD-----MP 545

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
               + +  IGR  R+    +          +
Sbjct: 546 EDIENYVHRIGRTGRSGKKGMATTFVNRRADM 577


>gi|297812857|ref|XP_002874312.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
 gi|297320149|gb|EFH50571.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
          Length = 748

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 9/137 (6%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++     +G + ++   TKR A++++  L   +I    +H ++   +R   +   R 
Sbjct: 340 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALS-NSIATEALHGDISQHQRERTLNAFRQ 398

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           GKF VLV  ++   GLDIP   LV               + +   GR  R         A
Sbjct: 399 GKFTVLVATDVASRGLDIPNVDLVI-----HYELPNDPETFVHRSGRTGRAGKEGS---A 450

Query: 691 DTITKSIQLAIDETTRR 707
             +  S Q     +  R
Sbjct: 451 ILMHTSSQKRTVRSLER 467


>gi|152971432|ref|YP_001336541.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896027|ref|YP_002920763.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae NTUH-K2044]
 gi|262040311|ref|ZP_06013562.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|150956281|gb|ABR78311.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238548345|dbj|BAH64696.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259042420|gb|EEW43440.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 443

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 92/262 (35%), Gaps = 26/262 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ- 580
           R  T++ SAT     ++     ++E+ +  +   +P    R    Q     D+I    + 
Sbjct: 181 RKQTMLFSATLEGDAIKDFAERLLEEPVEVS--ANPSTRERKKIHQWYYRADDIEHKTKL 238

Query: 581 --------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                   +  R ++ V  +    +L  +L E  I   ++  E+   +R E I+ L  G+
Sbjct: 239 LVNLLQQPEATRAIVFVRKRERVHELANWLREAGINTCWLEGEMVQAKRNEAIKRLTDGR 298

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            +VL+  ++   G+DIP+   V   D  +     +  + +  IGR  R       +    
Sbjct: 299 VNVLIATDVAARGIDIPDVSHVFNFDMPR-----TADTYLHRIGRTGRAGKKGTAISLVE 353

Query: 693 ITK-----SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
                    I   I+E  + R        +     ++  EK+       +L   A     
Sbjct: 354 AHDHLLLGKIGRYIEEPLKARVI-----DELRPTTRAPSEKLTGKPSKKVLAKRAQKKKD 408

Query: 748 IDAQQLSLSKKKGKAHLKSLRK 769
              +     + +   ++   RK
Sbjct: 409 EKEKPRVKKRHRDTKNIGKRRK 430


>gi|90408914|ref|ZP_01217050.1| putative ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
 gi|90309973|gb|EAS38122.1| putative ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
          Length = 431

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 75/205 (36%), Gaps = 16/205 (7%)

Query: 521 LRPTTIVVSAT-PGS-----WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            +  T++ SAT P        EL      I  Q    + LV     +   + Q   +   
Sbjct: 195 KKKQTLLFSATFPEQVQALTQELLNEPVEIQLQSADASTLVQRVFTVN--KGQKTALLAH 252

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +     Q  + L+ V  KR  + L E L +R I     H       R  ++   + G+ +
Sbjct: 253 LIKH-HQWRQALIFVNAKRNCDHLAEKLSKRGITAEVFHGAKGQGARDRVLESFKAGEIN 311

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VL+  ++   GLDI +  +V   D       RS +  +  IGR+ R     + L      
Sbjct: 312 VLIATDIAARGLDIEKLPVVINFD-----LPRSPSDYMHRIGRSGRAGEVGLALSLIDHE 366

Query: 695 KSIQLAIDETTRRREKQLEHNKKHN 719
                 I E  ++ + +LE  +   
Sbjct: 367 DYHHFKIIE--KKNKIRLEREQVAG 389


>gi|311898243|dbj|BAJ30651.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054]
          Length = 884

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 13/175 (7%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRP-----TGLVDPPVEIRSARTQVEDVYDEI 575
           +  T++ SAT PG       + +     IR      TG     +E    R    D  + +
Sbjct: 158 KRQTLLFSATMPGQVISLARRYMSQPTHIRAAAPDDTGTTVANIEQHIFRAHSLDKVEMV 217

Query: 576 NLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +   Q   R   ++   TKR A D+ E L +R      +H ++    R + +R  R GK 
Sbjct: 218 SRILQADGRGLAMIFCRTKRTAADVAEQLTKRGFAAGAVHGDLGQGAREQALRAFRNGKV 277

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           DVLV  ++   G+D+     V             + + +  IGR  R   S   +
Sbjct: 278 DVLVCTDVAARGIDVEGVTHVINYQCT-----DDEKTYLHRIGRTGRAGASGTAV 327


>gi|307278457|ref|ZP_07559532.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
 gi|306504963|gb|EFM74158.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
          Length = 536

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 13/192 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +        E + I+   +    ++   +RS   +  D+   +  
Sbjct: 197 QTLLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLD 256

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L   L  R  +   +H ++   +R+ ++R  + G  D+LV
Sbjct: 257 -VQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 315

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R       + +       
Sbjct: 316 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMG 370

Query: 697 IQLAIDETTRRR 708
               I+  T++R
Sbjct: 371 YLHVIENLTKKR 382


>gi|261868794|ref|YP_003256716.1| ATP-dependent RNA helicase RhlB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414126|gb|ACX83497.1| ATP-dependent RNA helicase RhlB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 418

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 119/358 (33%), Gaps = 64/358 (17%)

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTA-MKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           TG+ I  +  +  +  ++          A +     EL +++             ++  +
Sbjct: 57  TGKTIAFLSALFHHLLTYPKQTEANQPRALILAPTRELAVQIEH---------DAQIFLK 107

Query: 426 ITYDLEMLETTGSC-----QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
            T     L   G       ++IEN    L G         + +Y+ +  ++ +D      
Sbjct: 108 TTKFKTALAYGGDGYDKQLKAIENGVDVLIGTTGR-----VIDYV-KQGVIRLD------ 155

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
            QI  +   +  R   L   GF      D R L  +     +  T++ SAT      E  
Sbjct: 156 -QIQTVVLDEADRMFDL---GFI----RDIRYLLRKCPPPQQRLTMLFSATLSYKVRELA 207

Query: 541 QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG--------------LRIL 586
              +              VEI   +   + + +E+   + +                R +
Sbjct: 208 FEDMNS---------PEYVEIEPEQKTGQQIKEELFYPSNRDKMPLLLTLLEEEWPERCI 258

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +   TK   E++  YL     RV  +  +V   +R+ +++    G  D+LV  ++   GL
Sbjct: 259 VFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKKFTDGDLDILVATDVAARGL 318

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
            I E   V   D         +   +  IGR  R   S + I +A         AI+E
Sbjct: 319 HIAEVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGISISFACEQYAMNLPAIEE 371


>gi|218675982|ref|YP_002394801.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
           LGP32]
 gi|218324250|emb|CAV25533.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
           LGP32]
          Length = 447

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 64/172 (37%), Gaps = 12/172 (6%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR-----TQVEDVYDEI 575
            R  T++ SAT    E+      +++   R +  V     +   +       ++     +
Sbjct: 182 RRRQTLMFSATLDHAEVNDIANEMLDSPKRISVGVSNEQHLDITQKFYLCDHLDHKEAIL 241

Query: 576 NLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +   ++    ++++   T+   + LTE L E+ ++   +   +   +R  I+       +
Sbjct: 242 DRVIEEAEYRQVMIFTATRADTDRLTEKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVY 301

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV  ++   G+DIP    V   D  K          +  +GR  R  N  
Sbjct: 302 KILVTTDVASRGIDIPNVSHVINFDMPK-----HTEEYVHRVGRTGRAGNKG 348


>gi|229587022|ref|YP_002845523.1| ATP-dependent RNA helicase RhlE [Rickettsia africae ESF-5]
 gi|228022072|gb|ACP53780.1| ATP-dependent RNA helicase RhlE [Rickettsia africae ESF-5]
          Length = 410

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 68/187 (36%), Gaps = 10/187 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDVYDEINLAAQ 580
           +   ++ SAT     +   Q  +   +    G  +    EI+     V D      L  Q
Sbjct: 170 KRQVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSALTKQ 229

Query: 581 QGLR---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            G R   +++ V TKR A+ L + L   N     +H ++   +R  +I   R     ++V
Sbjct: 230 LGNREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMV 289

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDIP    V   D             +  IGR  R   +   L   +    I
Sbjct: 290 ATDVAARGLDIPHTQHVINYD-----LPMCPEDYLHRIGRTGRAGATGHALSFISPDDVI 344

Query: 698 Q-LAIDE 703
           +  AID 
Sbjct: 345 RWRAIDR 351


>gi|170077242|ref|YP_001733880.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
 gi|12003026|gb|AAG43442.1|AF186181_2 ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
 gi|169884911|gb|ACA98624.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
          Length = 487

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 10/130 (7%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
              ++ V TKR A +LT  L E        H ++   +R +++R  + GK  ++V  ++ 
Sbjct: 243 ESAIIFVRTKRTASELTNELVEAGQSADEYHGDLNQNQREKLVRRFKDGKIKMIVATDIA 302

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D        +  S I  IGR  R   +   I   +   + +   I
Sbjct: 303 ARGLDVENLSHVINFD-----LPDNTESYIHRIGRTGRAGKTGTAIALVEPSDRRLLRQI 357

Query: 702 DETTRRREKQ 711
           +    RR KQ
Sbjct: 358 E----RRVKQ 363


>gi|114564866|ref|YP_752380.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114336159|gb|ABI73541.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 634

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 7/131 (5%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +    I++ V T+    +L E L  R      +H ++    R   +  L+ GK D+L+ 
Sbjct: 241 VENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGKLDILIA 300

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLD+   G V   D           + +  IGR  R   +   IL+       +
Sbjct: 301 TDVAARGLDVERIGHVVNYD-----IPYDSEAYVHRIGRTGRAGRTGMAILFVTNREMRM 355

Query: 698 QLAIDE-TTRR 707
              I+  T  R
Sbjct: 356 LRTIERATNSR 366


>gi|67483578|ref|XP_657009.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56474243|gb|EAL51623.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 384

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 84/210 (40%), Gaps = 17/210 (8%)

Query: 512 PLRFEEWNCL--RPTTIVVSATPGSWELE---QCQGIIVEQIIRPTGLVDPPVEIRSART 566
           P+ ++ +  L  +   ++ SAT     +E   +     +E +I+   +    ++      
Sbjct: 173 PIIYDIFKYLPIKRQIVLCSATLTPDVIEIGTKIMNKPIEILIKRDEVTVEEIKQYFIEM 232

Query: 567 ----QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
               Q  D   EI  +      + +    ++  + LTE + + N  V  MHSE+   ER 
Sbjct: 233 EGEEQKFDTLCEIYDSMTITQSV-IFCNMRKKVDWLTENMMKANFPVISMHSEMPQQERD 291

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
            I+   R G+  VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R  
Sbjct: 292 YIMNIFRKGEKRVLITTDVWARGIDVTQISLVINYD-----MPLNREVYIHRIGRSGRFG 346

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQL 712
            + + +    + K+    + +  R    Q+
Sbjct: 347 RTGIAINF--VLKNEMEELRDLERYYSTQI 374


>gi|322785598|gb|EFZ12253.1| hypothetical protein SINV_05205 [Solenopsis invicta]
          Length = 725

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 88/252 (34%), Gaps = 34/252 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ + +          + + + +   +  R     + GF         P   +
Sbjct: 239 TPGRLIDFLEKGTT--------NLRRCTYLVLDEADRM---LDMGFE--------PQIRK 279

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV--------DPPVEIRSART 566
               +RP    ++ SAT         +  + + I    G +           +EI     
Sbjct: 280 IIEQIRPDRQVLMWSATWPKEVQALAEDFLTDYIQINIGSLTLAANHNIRQIIEICQEHE 339

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +   +   +     +  ++++ V TK+  +D+T+ +         +H +    ER  ++ 
Sbjct: 340 KETKLSQLLREIGAERSKMIIFVETKKKVDDITKTIKRDGWPAISIHGDKSQPERDYVLS 399

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + R GK  +LV  ++   GLD+ +   V   D     +  S    I  IGR  R  ++  
Sbjct: 400 EFRNGKTMILVATDVAARGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGRCQSAGT 454

Query: 687 ILYADTITKSIQ 698
                T   + Q
Sbjct: 455 AYAYFTPNNARQ 466


>gi|322495292|emb|CBZ30595.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 405

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 69/198 (34%), Gaps = 22/198 (11%)

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           LPS      L+   ++   P T+   A       +E+     + ++ + +    V+   +
Sbjct: 201 LPSQ-----LQSMLFSATFPVTVKTFAERHLHNPYEINLMDELTLKGVTQYYAFVEERQK 255

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I           + +    Q    I +   +    E L + + +      Y+H+ ++   
Sbjct: 256 IH--------CLNTLFNKLQINQSI-IFCNSVNRVELLAKKITQLGYSCYYIHARMQQQH 306

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  +  D R G    LV  +L+  G+DI    +V   D  K        + +  IGR+ R
Sbjct: 307 RNRVFHDFREGHCRNLVCSDLITRGIDIQAVNVVINFDFPKY-----AETYLHRIGRSGR 361

Query: 681 NVNSKVILYADTITKSIQ 698
             +  V +   T      
Sbjct: 362 FGHLGVAINFVTYDDRYN 379


>gi|315505697|ref|YP_004084584.1| dead/deah box helicase domain protein [Micromonospora sp. L5]
 gi|315412316|gb|ADU10433.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
          Length = 585

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +     ++   ++   + LTE +  R  R   +H  +   +R  ++  LR G  D+LV 
Sbjct: 260 VESPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVA 319

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   GLD+ +   V   D        +  S +  IGR  R     V I  A+     +
Sbjct: 320 TDVAARGLDVEQLTHVVNYDV-----PSAPESYVHRIGRVGRAGREGVAITLAEPREHRM 374

Query: 698 QLAIDETTRRR 708
              I+  T +R
Sbjct: 375 LKTIERVTGQR 385


>gi|169347296|ref|ZP_02866234.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552]
 gi|169293913|gb|EDS76046.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552]
          Length = 531

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 109/303 (35%), Gaps = 53/303 (17%)

Query: 522 RPTTIVVSAT--PGSWELEQ-------CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
              TI+ SAT   G  ++ Q           ++ +    T +     E++  + + E + 
Sbjct: 178 ARQTILFSATMPAGIKKIAQNYMHDDFKHVAVLSKQTTATSVKQFYYEVKP-KDRFETLC 236

Query: 573 DEINLA-AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             I++A  + G   ++   TKR  +++TE + + N  V  MH ++    R+  +R  + G
Sbjct: 237 RLIDVANIKTG---IIFCRTKRSVDEVTEQMQQSNYNVEAMHGDLNQNHRMNTLRKFKKG 293

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
             + LV  ++   G+D+     V   +       +   S +  IGR  R     +     
Sbjct: 294 TINFLVATDVAARGIDVENVTHVINYE-----LPQDIESYVHRIGRTGRADKEGLAYSII 348

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
           +  +   L          KQ+E      +   ++ +  +  +  I           ++  
Sbjct: 349 SPKEVSFL----------KQIER-----VTKSTITKVNVPTLQEIFEARIGALISDVEDV 393

Query: 752 QLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI-------------RDEIKRLKSSPY 798
            L+ + K+ K  +  +   M       +F  AA +             RD I+ + S  Y
Sbjct: 394 ILAGNHKRFKQLVNEIDPTMLS-----DF-TAALLYISYQEQLGYDYQRDVIQEINSKKY 447

Query: 799 FQG 801
            + 
Sbjct: 448 DRN 450


>gi|149633893|ref|XP_001512924.1| PREDICTED: similar to helicase like protein 2 [Ornithorhynchus
           anatinus]
          Length = 651

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 419 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 478

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 479 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 525


>gi|197099360|ref|NP_001124720.1| ATP-dependent RNA helicase DDX3Y [Pongo abelii]
 gi|73620771|sp|Q5RF43|DDX3Y_PONAB RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|55725665|emb|CAH89614.1| hypothetical protein [Pongo abelii]
          Length = 658

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 67/187 (35%), Gaps = 12/187 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDV-----YDEI 575
              T++ SAT         +  + E I    G V    E I      VED+       ++
Sbjct: 373 VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDL 432

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +
Sbjct: 433 LGATGRDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 492

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   +   GLDI     V   D             +  IGR  R  N  +        K
Sbjct: 493 LVATAVAARGLDISNVRHVINFD-----LPSDIEEYVHRIGRTGRVGNLGLATSFFN-EK 546

Query: 696 SIQLAID 702
           ++ +  D
Sbjct: 547 NMNITKD 553


>gi|71901632|ref|ZP_00683711.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|71728608|gb|EAO30760.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
          Length = 544

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 86/244 (35%), Gaps = 29/244 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+ +  ++ +    + +         +  R   L   GF      D R +   
Sbjct: 142 TPGRLIDYLKQHEVVSLRVCEICV-------LDEADRMFDL---GFI----KDIRFILRR 187

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII--VEQIIRPTGLVDP-PVEIRSA----RTQVE 569
                   T++ SAT     LE     +   E+++  T  V    V  R        ++ 
Sbjct: 188 LPERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFPAEEEKIP 247

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   ++    +G+R ++ V TK   E +   L E   RV  +  +V   +R  ++   +
Sbjct: 248 LLLGLLS--RSEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQ 305

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G+ ++LV  ++   GL I     V   D             +  IGR AR       I 
Sbjct: 306 KGQLEILVATDVAARGLHIDGVNYVYNYD-----LPFDAEDYVHRIGRTARLGADGDAIS 360

Query: 689 YADT 692
           +A  
Sbjct: 361 FACE 364


>gi|326773277|ref|ZP_08232560.1| cold-shock DEAD box protein A [Actinomyces viscosus C505]
 gi|326636507|gb|EGE37410.1| cold-shock DEAD box protein A [Actinomyces viscosus C505]
          Length = 865

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 12/177 (6%)

Query: 538 EQCQGIIVEQIIRPTGLVDPP---VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           +     +  ++ RP   V        +   R ++  V   + +        ++ V TK  
Sbjct: 356 QHLHEPVQVEVSRPASTVATVHQTYAVVPFRHKIGAVSRVLAVTDA--EAAIVFVRTKST 413

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           AED+   L  R I+   +  +V   ER  ++  LR G  DVLV  ++   GLD+   GLV
Sbjct: 414 AEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLVATDVAARGLDVDRIGLV 473

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE-TTRRRE 709
              D  +E       + +  IGR  R       + +     K     I+  T  R E
Sbjct: 474 VNFDVPRE-----AEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIERLTGSRLE 525


>gi|302558562|ref|ZP_07310904.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000]
 gi|302476180|gb|EFL39273.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000]
          Length = 868

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 84/221 (38%), Gaps = 26/221 (11%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGL 554
            + + GF LP        +   +  ++  T++ SAT PG+      + +     IR T  
Sbjct: 206 EMLDLGF-LPDVE-----KIINFLPVKRQTMLFSATMPGAVIGLARRYMSQPTHIRATAP 259

Query: 555 VDPPVEIRSARTQVEDVYDE--------INLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
            D    + +    V   ++         I  A  +GL +++   TKR A DL + L +R 
Sbjct: 260 DDEGATVANTTQFVYRAHNMDKPEMVSRILQADGRGL-VMVFCRTKRTAADLADQLKQRG 318

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
                +H ++    R + +R  R GK DVLV  ++   G+D+     V    +       
Sbjct: 319 FASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQS-----PE 373

Query: 667 SKTSLIQTIGRAARNVNSK-VILYADTITKS----IQLAID 702
            + + +  IGR  R       I   D         I  A+D
Sbjct: 374 DEKTYLHRIGRTGRAGAKGTAITLVDWDDIPRWQLINKALD 414


>gi|242399022|ref|YP_002994446.1| ATP-dependent RNA helicase, DEAD-family [Thermococcus sibiricus MM
           739]
 gi|242265415|gb|ACS90097.1| ATP-dependent RNA helicase, DEAD-family [Thermococcus sibiricus MM
           739]
          Length = 382

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 74/206 (35%), Gaps = 18/206 (8%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPP-------VEIRSARTQVEDVYDE 574
              ++ SAT     L   +  + + ++IR       P        E+R    +   +   
Sbjct: 176 KRVLMFSATIPREILRLARRYLKDYEVIRIQDRSLAPELVEQIYFEVRP--NKRFSLLCS 233

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I    ++    ++   TKR   +L   L  +   V  ++ ++    R  I+   R GK  
Sbjct: 234 ILD--EKDFYGIVFCQTKRETRELASKLKTKGYSVEALNGDIPQKGRERILERFRKGKIR 291

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTI 693
           VLV  ++   G+D+ +   V           ++  + +  IGR  R     K I +    
Sbjct: 292 VLVATDVAARGIDVKDLTHVINYS-----IPQNPEAYVHRIGRTGREGKRGKAITFVAPW 346

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHN 719
                  I+   R + K++ +  ++ 
Sbjct: 347 ESPKLRDIERVARVKIKEMAYPTEYG 372


>gi|145608086|ref|XP_360845.2| hypothetical protein MGG_03388 [Magnaporthe oryzae 70-15]
 gi|152013507|sp|A4R715|DHH1_MAGO7 RecName: Full=ATP-dependent RNA helicase DHH1
 gi|145015595|gb|EDK00085.1| hypothetical protein MGG_03388 [Magnaporthe oryzae 70-15]
          Length = 524

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 84/247 (34%), Gaps = 32/247 (12%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           +++      ++ SAT                +E+     + +  I +    V+   ++  
Sbjct: 204 QFHPKDRQVMLFSATFPISVKEFSDKNMTNPYEINLMDELTLRGITQYYAFVEEKQKVH- 262

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H++++   R  
Sbjct: 263 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHAKMQQQARNR 314

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 315 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRYGH 369

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQ-----LEHNKKHNINPQSVKEKIMEVIDPILL 738
             + +   +      L   E     E Q     ++ +     NP+++   I     P   
Sbjct: 370 LGLAINLISWEDRFNLYNIERDLGTEIQPIPSTIDKSLYVYDNPETIPRPINIPAQPSSA 429

Query: 739 EDAATTN 745
            +A +  
Sbjct: 430 GNAQSAA 436


>gi|15010552|gb|AAK74073.1| eukaryotic translation initiation factor 4A-1 [Elaeis oleifera]
          Length = 170

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V T+R  + LT+ L  R+  V   H ++    R  I+R+ R G   VL+  +LL  G
Sbjct: 43  VIFVNTRRKVDWLTDKLRSRDHTVSATHGDMDQNARDIIMREFRSGSSRVLITTDLLARG 102

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           +D+ +  LV   D           + +  IGR+ R     V I +     + +   I  
Sbjct: 103 IDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQR 156


>gi|327306565|ref|XP_003237974.1| ATP-dependent RNA helicase DHH1 [Trichophyton rubrum CBS 118892]
 gi|326460972|gb|EGD86425.1| ATP-dependent RNA helicase DHH1 [Trichophyton rubrum CBS 118892]
          Length = 508

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 79/252 (31%), Gaps = 34/252 (13%)

Query: 518 WNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           ++      ++ SAT P              +E+     + +  I +    V+   ++   
Sbjct: 216 FHPKDRQVMLFSATFPIIVKTFKDKHMRNPYEINLMDELTLRGITQYYAFVEERQKVH-- 273

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
                   + +    Q    I +   +    E L + + E      Y H+ +    R  +
Sbjct: 274 ------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRV 326

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
             D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  + 
Sbjct: 327 FHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGHL 381

Query: 685 KVILYADTITKSIQLAIDETTRRREKQ-----LEHNKKHNINPQSVKEKIMEVIDPILLE 739
            + +          L   E     E Q     ++        P ++   I     P   +
Sbjct: 382 GLAINLINWDDRYNLYKIEQELGTEIQPIPPSIDKKLYVYETPNTIPRPISN--KPSEEQ 439

Query: 740 DAATTNISIDAQ 751
             A+       Q
Sbjct: 440 KPASAESQPRKQ 451


>gi|313609131|gb|EFR84825.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL F2-208]
          Length = 470

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 86/251 (34%), Gaps = 29/251 (11%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            +   +  SAT    E++       +  +      +    I     Q ++    +     
Sbjct: 171 KQRQNLFFSAT-MPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEMQTDNKEKTLKDVLI 229

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +     ++   TK   ++LT+ L   +++   +H  ++  +R   + D + GK   L+ 
Sbjct: 230 TENPDSAIIFCNTKNQVDELTDLL---DVKASKIHGGLRQEDRFRAMDDFKSGKSRFLIA 286

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            ++   G+D+    LV   D   E     K + +  IGR  R   S K I +  T    +
Sbjct: 287 TDVAGRGIDVDNVSLVINYDLPIE-----KENYVHRIGRTGRAGKSGKAISFVKTNENPL 341

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIM-EVIDPILLEDAATTNISIDAQQLSLS 756
              I+E                +   ++++K    VI+    EDA               
Sbjct: 342 LRDIEE----------------MLNVTIEKKRKPTVIEVKANEDAFRKKQQKRPTIKKAR 385

Query: 757 KKKGKAHLKSL 767
            +K   ++  L
Sbjct: 386 GEKLNKNIMKL 396


>gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii DSM
           519]
 gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii]
          Length = 515

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 73/190 (38%), Gaps = 13/190 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVYDEI--NL 577
            T++ SAT         Q  +       +   T  VD  +E R    +  D +D +   +
Sbjct: 177 QTLLFSATMPKRIQSVSQKFMKSPQTVAVKNKTMTVDT-IEQRYLDLKERDKFDALCRLM 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                   ++   TKR  ++L+E L  R   V  +H ++K   R +++R  + G   +LV
Sbjct: 236 DIHCPELSIIFGRTKRRVDELSEALSIRGYDVEGIHGDMKQERREKVLRRFKRGSIKILV 295

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R     +   +     + 
Sbjct: 296 ATDVAARGLDISGVSHVFNFD-----LPQDPESYVHRIGRTGRAGQKGISFTFVTPRERE 350

Query: 697 IQLAIDETTR 706
               I++TT+
Sbjct: 351 YLELIEDTTK 360


>gi|224284362|gb|ACN39916.1| unknown [Picea sitchensis]
          Length = 593

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 524 TTIVVSAT-PGSWEL-------EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E           + II    ++    +   VE+ S   +   +   +
Sbjct: 350 QTLYWSATWPREVENLARQFLHNPYKVIIGSADLKANHAISQIVEVVSEYEKYPRLIKLL 409

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G RIL+ + TK+  + +T+ L         +H +    ER  ++ + + GK  +
Sbjct: 410 EE-IMDGSRILIFMETKKGCDQVTKQLRMDGWPALSIHGDKSQAERDWVLGEFKAGKSPI 468

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +   ++   GLD+ +   V   D     F  S    +  IGR  R        
Sbjct: 469 MTATDVAARGLDVKDIKCVINYD-----FPGSLEDYVHRIGRTGRAGAKGTAY 516


>gi|159043882|ref|YP_001532676.1| DEAD/DEAH box helicase domain-containing protein [Dinoroseobacter
           shibae DFL 12]
 gi|157911642|gb|ABV93075.1| DEAD/DEAH box helicase domain protein [Dinoroseobacter shibae DFL
           12]
          Length = 493

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 82/266 (30%), Gaps = 45/266 (16%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++     L+  D       ++  +   D      + + GF         P   +
Sbjct: 130 TPGRLLDHFERGKLILTD------VKVMVVDEADR-----MLDMGFI--------PDIEK 170

Query: 517 EWNC--LRPTTIVVSATPGSWELEQCQGIIVEQIIR-------------PTGLVDPPVEI 561
            +        T+  SAT    E+E+     +    R               GLV      
Sbjct: 171 IFQLTPFTRQTLFFSATMAP-EIERITNTFLSNPARVEVARQSTTSETITQGLVQFKPSR 229

Query: 562 RSARTQVEDVYDEINLAAQQG----LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           R   T  ++  + +    ++        ++    K   + + + L +       +H +++
Sbjct: 230 RDRATAFKEKREMLRALIEREGDGCRNAIIFCNRKMDVDVVAKSLIKHGYDAAPIHGDLE 289

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             +R + +   R G    LV  ++   GLDIP    V   D             +  IGR
Sbjct: 290 QSQRTKTLDQFRDGTLKFLVASDVAARGLDIPNVSHVFNFDV-----PSHAEDYVHRIGR 344

Query: 678 AARNVNSK-VILYADTITKSIQLAID 702
             R       ++ A      +  AI+
Sbjct: 345 TGRAGRKGTTLMLAVPADDKLLAAIE 370


>gi|254974450|ref|ZP_05270922.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-66c26]
 gi|255091842|ref|ZP_05321320.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
           107932]
 gi|255099944|ref|ZP_05328921.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-63q42]
 gi|255305833|ref|ZP_05350005.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
           43255]
 gi|255313577|ref|ZP_05355160.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-76w55]
 gi|255516261|ref|ZP_05383937.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-97b34]
 gi|255649358|ref|ZP_05396260.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-37x79]
 gi|260682530|ref|YP_003213815.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260686129|ref|YP_003217262.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|260208693|emb|CBA61492.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260212145|emb|CBE02789.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 375

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 72/203 (35%), Gaps = 19/203 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA-- 579
           +  T+  SAT  S   +         ++    +    + + + + +V +  D   L A  
Sbjct: 180 KKQTLCFSATINSQVKKLAYRYTKNPVV--VSIQKEEITLNNIKQEVVETTDRKKLDALC 237

Query: 580 -----QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                      ++   TKR  ++L E L  R    + +HS++   +R  I++  R     
Sbjct: 238 KVLDEDNPFMAIIFCRTKRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQ 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTI 693
            L+  ++   GLDI     +   D        +    I  IGR  R         + D  
Sbjct: 298 YLIATDVASRGLDISGVSHIYNYD-----LPETPEDYIHRIGRTGRAGEEGYTCAFIDPK 352

Query: 694 TKSI----QLAIDETTRRREKQL 712
            + +    + AI+    RR  +L
Sbjct: 353 NERMLSEIETAIESKISRRIIEL 375


>gi|85115638|ref|XP_964910.1| hypothetical protein NCU09093 [Neurospora crassa OR74A]
 gi|28926707|gb|EAA35674.1| hypothetical protein NCU09093 [Neurospora crassa OR74A]
          Length = 593

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V +KR A++L ++L+ + +    MHS+    ER   +R  R G+  VL+   +  
Sbjct: 400 RTIIFVNSKRAADELDDFLFNKGVPCVSMHSDRTQREREAAMRAFRAGRSPVLITTAVTA 459

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            G+D+     V   D     +       +  IGR  R  +  +     T    
Sbjct: 460 RGIDVRNVLHVINFDLPSTMYG-GIEEYVHRIGRTGRIGHRGLATSFYTERDE 511


>gi|323343824|ref|ZP_08084051.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
 gi|323095643|gb|EFZ38217.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
          Length = 626

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 66/186 (35%), Gaps = 7/186 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TKR  +++ + L         +H ++   +R   ++  R      LV  ++   
Sbjct: 245 AIIFCRTKRETQEIADKLIHDGYNAEALHGDLSQQQRDLTMQKFRQHMTQFLVATDVAAR 304

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           GLD+ +   V        G      S     GR  R       I    T  +S   AI++
Sbjct: 305 GLDVEDLTHVINY-----GLPDDIESYTHRSGRTGRAGKKGTSISIIHTRERSKMRAIEK 359

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS-IDAQQLSLSKKKGKA 762
              ++  +        I  + + + + E++   + E+     ++ I+     + K+    
Sbjct: 360 VIGKQFVEGVMPTAKEICTKQLYKTMDEILKIDVNEEEIAPFMADINRHFEYIDKEDIIK 419

Query: 763 HLKSLR 768
            + SL 
Sbjct: 420 KIVSLE 425


>gi|309751440|gb|ADO81424.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae R2866]
          Length = 418

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 90/252 (35%), Gaps = 34/252 (13%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +DE  V +         +  R   L   GF        R +R+    C 
Sbjct: 148 IDYV-KQGVIGLDEIQVVV-------LDEADRMFDL---GFI-------RDIRYLLRKCP 189

Query: 522 RPT---TIVVSATPGSWELEQCQGIIVE------QIIRPTGLVDPPVEIRSARTQVEDVY 572
            P    T++ SAT      E     + +      +  + TG      E+     Q +   
Sbjct: 190 APQARLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKE-ELFYPSNQDKMAL 248

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               +  +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G 
Sbjct: 249 LLTLMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGD 308

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
            D+LV  ++   GL I +   V   D         +   +  IGR  R   S V I +A 
Sbjct: 309 LDILVATDVAARGLHISDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFAC 363

Query: 692 TITKSIQLAIDE 703
                   AI+E
Sbjct: 364 EEYAMNLPAIEE 375


>gi|254284072|ref|ZP_04959040.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
 gi|219680275|gb|EED36624.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
          Length = 598

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 9/172 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V T+   ++L + L  R      ++ ++   +R + +   + G+ D+LV  ++   
Sbjct: 250 VIIFVRTRIATQELADKLAARGFATAALNGDIAQNQREKTVDSFKRGQLDLLVATDVAAR 309

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           + I  IGR  R   +   IL+A    + +  AI+ 
Sbjct: 310 GLDVDRVSHVINYD-----IPNDPEAYIHRIGRTGRAGRTGEAILFAAKRERRLLHAIER 364

Query: 704 TTRRREKQLEHNKKHNINPQSVKE---KIMEVIDPILLEDAATTNISIDAQQ 752
           TT ++  Q+       +  +       +I E +    L  A     S   + 
Sbjct: 365 TTGQKIDQMTLPSAEQVVDKRAARFKARITETLAASELSSARELVESYQQEF 416


>gi|192362407|ref|YP_001982121.1| ATP-dependent RNA helicase [Cellvibrio japonicus Ueda107]
 gi|190688572|gb|ACE86250.1| ATP-dependent RNA helicase, DEAD box family [Cellvibrio japonicus
           Ueda107]
          Length = 477

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 72/206 (34%), Gaps = 25/206 (12%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVE--IRSARTQVED 570
            +P  +  SAT     L Q    + ++I        +     V   VE  +       + 
Sbjct: 206 KKPQILFFSAT-----LTQSVTTLAKEILARPLSVAVSKRNAVADTVEHLLYPVDQARKY 260

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                 L      ++++   T+  A+ L   L E N+    +HSE     R   +++ + 
Sbjct: 261 ELFMELLRTHNWFQVMVFSSTREEADKLINALKEDNVEGAVIHSEKTQGARRRALKEFKE 320

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           GK  VLV   +   GLDI     V  LD             +  +GR  R  +  + +  
Sbjct: 321 GKLQVLVATEVAARGLDIQGLDYVVNLDLPFF-----IEDYVHRVGRTGRAGSKGIAISL 375

Query: 691 DTITKS-----IQLAIDETTRRREKQ 711
            + +       I+ AI    +R + +
Sbjct: 376 VSASDEPKVALIEKAIGTKIKRVKIK 401


>gi|79328737|ref|NP_001031943.1| emb1138 (embryo defective 1138); ATP binding / ATP-dependent
           helicase/ RNA binding / helicase/ nucleic acid binding /
           zinc ion binding [Arabidopsis thaliana]
 gi|108861893|sp|Q8L7S8|RH3_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
           AltName: Full=Protein EMBRYO DEFECTIVE 1138; Flags:
           Precursor
 gi|19347898|gb|AAL85971.1| unknown protein [Arabidopsis thaliana]
 gi|20259537|gb|AAM13888.1| unknown protein [Arabidopsis thaliana]
 gi|20453225|gb|AAM19851.1| At5g26752 [Arabidopsis thaliana]
 gi|21689779|gb|AAM67533.1| unknown protein [Arabidopsis thaliana]
 gi|23397145|gb|AAN31856.1| unknown protein [Arabidopsis thaliana]
 gi|25090432|gb|AAN72300.1| At5g26752/At5g26752 [Arabidopsis thaliana]
 gi|27311701|gb|AAO00816.1| Unknown protein [Arabidopsis thaliana]
 gi|110739485|dbj|BAF01652.1| hypothetical protein [Arabidopsis thaliana]
 gi|332006182|gb|AED93565.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
          Length = 748

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 9/137 (6%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++     +G + ++   TKR A++++  L   +I    +H ++   +R   +   R 
Sbjct: 340 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALS-NSIATEALHGDISQHQRERTLNAFRQ 398

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           GKF VLV  ++   GLDIP   LV               + +   GR  R         A
Sbjct: 399 GKFTVLVATDVASRGLDIPNVDLVI-----HYELPNDPETFVHRSGRTGRAGKEGS---A 450

Query: 691 DTITKSIQLAIDETTRR 707
             +  S Q     +  R
Sbjct: 451 ILMHTSSQKRTVRSLER 467


>gi|30690260|ref|NP_680225.2| emb1138 (embryo defective 1138); ATP binding / ATP-dependent
           helicase/ RNA binding / helicase/ nucleic acid binding /
           zinc ion binding [Arabidopsis thaliana]
 gi|20856975|gb|AAM26693.1| At5g26743 [Arabidopsis thaliana]
 gi|28416497|gb|AAO42779.1| At5g26743 [Arabidopsis thaliana]
 gi|332006181|gb|AED93564.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
          Length = 747

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 9/137 (6%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++     +G + ++   TKR A++++  L   +I    +H ++   +R   +   R 
Sbjct: 340 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALS-NSIATEALHGDISQHQRERTLNAFRQ 398

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           GKF VLV  ++   GLDIP   LV               + +   GR  R         A
Sbjct: 399 GKFTVLVATDVASRGLDIPNVDLVI-----HYELPNDPETFVHRSGRTGRAGKEGS---A 450

Query: 691 DTITKSIQLAIDETTRR 707
             +  S Q     +  R
Sbjct: 451 ILMHTSSQKRTVRSLER 467


>gi|322834951|ref|YP_004214978.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321170152|gb|ADW75851.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 430

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 101/336 (30%), Gaps = 61/336 (18%)

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG+ +  + +   Y  SH        N     I                    + L  +I
Sbjct: 57  TGKTLAFLASTFHYLLSHPAAEGRQTNQPRALIMA----------------PTRELAVQI 100

Query: 427 TYDLEMLET-----TGSCQSIENYSRYLTGRNPGE-----PPPTLFEYIPEDSLLFVDES 476
             D E L        G     + Y + L     G          L +Y          ++
Sbjct: 101 HSDAEALSESTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDY--------TKQN 152

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLRPTTIV 527
           H+ +  I  +   +  R   L   GF         R+P       + F      R   + 
Sbjct: 153 HIDLGAIQVVVLDEADRMFDL---GFIKDIRWLFRRMPPANQRLNMLFSATLSYRVKELA 209

Query: 528 VSATPGSWELE-QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                 +  +E + +     +I           ++R  +T +E+         +   R +
Sbjct: 210 FENMNNAESIEIEPEQKTGHRIQEELFYPSNEEKMRLLQTLIEE---------EWPDRCI 260

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +   TK   ED+  +L     RV  +  +V   +R+ ++ D   G  D+LV  ++   GL
Sbjct: 261 IFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRLRVLEDFTKGTLDILVATDVAARGL 320

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
            IP    V   D             +  IGR  R  
Sbjct: 321 HIPAVTHVFNYD-----LPDDCEDYVHRIGRTGRAG 351


>gi|320590896|gb|EFX03337.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 530

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 76/226 (33%), Gaps = 35/226 (15%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           +++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 215 QFHPKDRQVMLFSATFPLSVKDFSDKNMVSPYEINLMDELTLRGITQYYAFVEERQKVH- 273

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+++    R  
Sbjct: 274 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNR 325

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 326 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRYGH 380

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +        + L   E     E Q          P ++ + +
Sbjct: 381 LGLAINLINWDDRLNLYNIERDLGTEIQ--------PIPATIDKSL 418


>gi|290891221|ref|ZP_06554283.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429]
 gi|290479185|gb|EFD87847.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429]
          Length = 521

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 76/192 (39%), Gaps = 13/192 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIV----EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
            T++ SAT    ++++     +    E  I   GL    V+     T+  + +D +    
Sbjct: 176 QTLLFSAT-MPDDIKKIGVKFMKDPEEVHIASKGLTIDLVDQYLVNTREYEKFDAMTRLF 234

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +Q    ++   TKR  ++LT+ L  R  +   +H ++    R+  +R  + G+   LV
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R  +  V + +       
Sbjct: 295 ATDVAARGLDISGVTHVYNYDV-----PQDPESYVHRIGRTGRAGHHGVSVTFVVRGEID 349

Query: 697 IQLAIDETTRRR 708
              AI++   +R
Sbjct: 350 YLRAIEKLINKR 361


>gi|302384214|ref|YP_003820037.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194842|gb|ADL02414.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 528

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 76/210 (36%), Gaps = 39/210 (18%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           +   +  SAT    E+ +  G ++++ ++        V++    T VE +   +    +Q
Sbjct: 193 KRQNLFFSAT-MPTEIGKLAGELLKEPVK--------VQVTPQSTTVERINQSVIH-VEQ 242

Query: 582 GL---------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           G                R L+   TK  A+ +  YL    ++   +H      +R   + 
Sbjct: 243 GRKRALLTEMFADDNFTRCLVFTKTKHGADKVAAYLEAGGVQAGAIHGNKSQPQRERTLA 302

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSK 685
             + GK  VLV  ++   G+D+     V   +     F+    + +  IGR AR   +  
Sbjct: 303 AFKAGKLRVLVATDIAARGIDVDGVSHVVNFELP---FVP--EAYVHRIGRTARAGADGS 357

Query: 686 VILYA--------DTITKSIQLAIDETTRR 707
            I +           I K  +  I  T RR
Sbjct: 358 AISFVAGDEMKLLKDIEKVTRQKIPATDRR 387


>gi|215741236|dbj|BAG97731.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 478

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 85/247 (34%), Gaps = 25/247 (10%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            V+ S V++  I  +   +  R     + GF     +     R          T++ SAT
Sbjct: 108 MVERSKVSLEAIKYLVMDEADRM---LDMGFE--PQIRKIVERMNMPRKSVRQTMLFSAT 162

Query: 532 PGSWELEQCQG-------IIVEQIIRPTGLVDPPVEIRS---ARTQVEDVYDEINLAAQQ 581
                             I V ++   T L+   VE+ S    R  + D+    ++    
Sbjct: 163 FPPEIQRLASDFLSNYIFITVGRVGSSTDLIMQKVELLSDGEKRGYLLDLLQRQSVGVAN 222

Query: 582 GLR----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                   L+ V TKR A+ L  +LY +      +H +    ER   +R  + G   ++V
Sbjct: 223 SKLQQPLTLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMV 282

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLD+P    V   D  K     S    +  IGR  R   +     +      S
Sbjct: 283 ATDVASRGLDVPNVAHVINYDLPK-----SIEDYVHRIGRTGRAGKAGSATAFFTESDHS 337

Query: 697 IQLAIDE 703
           +   + E
Sbjct: 338 LAKGLLE 344


>gi|3775987|emb|CAA09196.1| RNA helicase [Arabidopsis thaliana]
          Length = 748

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 9/137 (6%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++     +G + ++   TKR A++++  L   +I    +H ++   +R   +   R 
Sbjct: 340 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALS-NSIATEALHGDISQHQRERTLNAFRQ 398

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           GKF VLV  ++   GLDIP   LV               + +   GR  R         A
Sbjct: 399 GKFTVLVATDVASRGLDIPNVDLVI-----HYELPNDPETFVHRSGRTGRAGKEGS---A 450

Query: 691 DTITKSIQLAIDETTRR 707
             +  S Q     +  R
Sbjct: 451 ILMHTSSQKRTVRSLER 467


>gi|72546967|ref|XP_843148.1| ATP-dependent DEAD-box RNA helicase [Leishmania major strain
           Friedlin]
 gi|323363662|emb|CBZ12667.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania major
           strain Friedlin]
          Length = 405

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 81/239 (33%), Gaps = 38/239 (15%)

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           LPS      L+   ++   P T+   A       +E+     + ++ + +    V+   +
Sbjct: 201 LPSQ-----LQSMLFSATFPVTVKTFAERHLHNPYEINLMDELTLKGVTQYYAFVEERQK 255

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I           + +    Q    I +   +    E L + + +      Y+H+ ++   
Sbjct: 256 IH--------CLNTLFNKLQINQSI-IFCNSVNRVELLAKKITQLGYSCYYIHARMQQQH 306

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  +  D R G    LV  +L+  G+DI    +V   D  K        + +  IGR+ R
Sbjct: 307 RNRVFHDFREGHCRNLVCSDLITRGIDIQAVNVVINFDFPKY-----AETYLHRIGRSGR 361

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
             +  V +   T      +              +  +  ++  +  + I   IDP L  
Sbjct: 362 FGHLGVAINFVTYDDRYNV--------------YRIEQELD--TEIKPIPAEIDPELYA 404


>gi|332088088|gb|EGI93213.1| ATP-dependent RNA helicase srmB [Shigella boydii 5216-82]
          Length = 442

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 12/181 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT  G    +  + ++ + + +          +I     + +D+  +  L  
Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L E  I   Y+  E+   +R E I+ L  G+ +
Sbjct: 241 HLLKQPEAPRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DIP+   V   D  + G      + +  IGR AR       +      
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSG-----DTYLHRIGRTARAGRKGTAISLVEAH 355

Query: 695 K 695
            
Sbjct: 356 D 356


>gi|289422689|ref|ZP_06424529.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
 gi|289156868|gb|EFD05493.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
          Length = 547

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 92/227 (40%), Gaps = 19/227 (8%)

Query: 524 TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T + SAT           ++ E     +V + +    +    +E R +  ++E +   I
Sbjct: 180 QTSLFSATMPKAILELTQKYQKEPVHIKVVRKELTVNNIKQFYIETRKS-NKLEVLTRLI 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++   +    ++   TK+ A++L   L  R      +H ++K ++R  ++   R G  D+
Sbjct: 239 DVYNPK--LTVVFTNTKKGADELVSDLQARGYGADSLHGDLKQVQRDIVMDKFRHGTIDI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+D+ +   V   +       + +   +  IGR  R      I ++    +
Sbjct: 297 LVATDVAARGIDVDDVECVINYE-----LPQDEEYYVHRIGRTGRAGRDG-IAFSFVFGR 350

Query: 696 SIQLAIDETTRRREKQLEHNK--KHNINPQSVKEKIMEVIDPILLED 740
            ++   D     + K ++H+    +++  + + +   ++ + +   +
Sbjct: 351 EMRKLKDIERYTKSKVMKHSIPTVNDVEQKKIGQFFSDIKETLEEGN 397


>gi|326204124|ref|ZP_08193984.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325985635|gb|EGD46471.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 564

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 10/167 (5%)

Query: 524 TTIVVSATPGSWELE---QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            TI+ SAT     LE   + Q   V   I    L  P +E      +     + ++    
Sbjct: 180 QTILFSATMPKEILELTKKYQKDPVHIKIAHKELTVPSIEQYYLEVKESAKLEVLSRLID 239

Query: 581 QG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                  L+   TK+  ++LT  L  R      +H +++   R +++   R G FD+L+ 
Sbjct: 240 TNDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMSLFRKGNFDILIA 299

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            ++   G+D+ +   V   D         +   +  IGR  R   + 
Sbjct: 300 TDVAARGIDVDDVEAVFNYD-----LPNDEEYYVHRIGRTGRAGRTG 341


>gi|261188002|ref|XP_002620418.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis SLH14081]
 gi|239593429|gb|EEQ76010.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis SLH14081]
          Length = 548

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 75/185 (40%), Gaps = 15/185 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T + SAT      +  Q  + + I    G +D          VEI S   + + +   +
Sbjct: 310 QTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHL 369

Query: 576 NLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +   ++    ++L+   TKR+A+D+T +L +       +H + +  ER  ++ + + GK 
Sbjct: 370 DRIMEENKSAKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKS 429

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++V  ++   G+D+ +   V   D     +  +    +  IGR  R       +   T 
Sbjct: 430 PIMVATDVASRGIDVRDITHVLNYD-----YPNNSEDYVHRIGRTGRAGAKGTAITLFTT 484

Query: 694 TKSIQ 698
             + Q
Sbjct: 485 DNAKQ 489


>gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
 gi|296027164|gb|ADG77934.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
           DSM 20162]
          Length = 602

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L E L  R      ++ ++   +R   I  L+ GK D+LV  ++   
Sbjct: 270 MIIFVRTKSATEELAEKLRARGHAAAAINGDIVQAQRERTIGQLKDGKVDILVATDVAAR 329

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R       +L+     + +  AI++
Sbjct: 330 GLDVERISHVVNYD-----IPHDTESYVHRIGRTGRAGRKGDALLFVTPRERHLLRAIEK 384

Query: 704 TTRR 707
            TR+
Sbjct: 385 ATRQ 388


>gi|115468814|ref|NP_001058006.1| Os06g0602400 [Oryza sativa Japonica Group]
 gi|113596046|dbj|BAF19920.1| Os06g0602400 [Oryza sativa Japonica Group]
          Length = 484

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 85/247 (34%), Gaps = 25/247 (10%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            V+ S V++  I  +   +  R     + GF     +     R          T++ SAT
Sbjct: 114 MVERSKVSLEAIKYLVMDEADRM---LDMGFE--PQIRKIVERMNMPRKSVRQTMLFSAT 168

Query: 532 PGSWELEQCQG-------IIVEQIIRPTGLVDPPVEIRS---ARTQVEDVYDEINLAAQQ 581
                             I V ++   T L+   VE+ S    R  + D+    ++    
Sbjct: 169 FPPEIQRLASDFLSNYIFITVGRVGSSTDLIMQKVELLSDGEKRGYLLDLLQRQSVGVAN 228

Query: 582 GLR----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                   L+ V TKR A+ L  +LY +      +H +    ER   +R  + G   ++V
Sbjct: 229 SKLQQPLTLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMV 288

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLD+P    V   D  K     S    +  IGR  R   +     +      S
Sbjct: 289 ATDVASRGLDVPNVAHVINYDLPK-----SIEDYVHRIGRTGRAGKAGSATAFFTESDHS 343

Query: 697 IQLAIDE 703
           +   + E
Sbjct: 344 LAKGLLE 350


>gi|51598876|ref|YP_073064.1| transcription-repair coupling factor [Borrelia garinii PBi]
 gi|51573447|gb|AAU07472.1| transcription-repair coupling factor [Borrelia garinii PBi]
          Length = 1124

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 101/289 (34%), Gaps = 36/289 (12%)

Query: 173 LLGVTGSGKTFTMAKV--IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L G  G  K F + K+       +  +++     L        KN       + F   Y 
Sbjct: 32  LTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTL-----DNIKNDLKVITNQIFELSY- 85

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
            + P  Y         K +  NE+I  +         +     +    S +  I    + 
Sbjct: 86  -FSPLVYKG----IGSKSTIFNERIKFL----INFYKKNPGIYITVLKSLLSKIPDKNTL 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
              I +++    + +K++  +L+   Y++     I G F + G+ I+++P   E+   ++
Sbjct: 137 LNNICKIEKNTKINRKDIEKTLITLGYEKTLRVTIPGEFAIKGEIIDLYP-FGEESPIKI 195

Query: 351 SMFGNDIEEISEFYPLTG-QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
            +  + IEEI +F PLT  +K   +   +I      +     +N+    IK         
Sbjct: 196 VLNFDKIEEIRKFNPLTQLKKDNEILEFQILPKKEIIWKNEIINSLKTKIKS-------- 247

Query: 410 LEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPP 458
                  +E  ++ + + +  E          + N   YL+     + P
Sbjct: 248 -------VEYNKIFEELNFKKEAKTEEMFYPLVAN--TYLSDEIEKQTP 287



 Score = 45.5 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 65/185 (35%), Gaps = 12/185 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +     I P   V     + S    +  +   I     +
Sbjct: 733 CLTLSATPIPRSLHMSLIKLRDISVLKIPPKNRVKIEAYLESFSELL--IKHAIESELSR 790

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++ L          L   + +     R   +H ++   E   I+ +     + +L+  
Sbjct: 791 DGQVFLVNHNIEELHYLKTLIEKLTPYARIAIIHGKLTGDEIENIMHNFIKKAYQILLAT 850

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI-Q 698
            ++  G+DIP    + I +A+K G  +    L Q  GR  R        +    ++ + +
Sbjct: 851 TIIENGIDIPNANTIIINNANKFGLAQ----LYQLKGRVGRGSKKAYAYFLYQDSEKLNE 906

Query: 699 LAIDE 703
            +I+ 
Sbjct: 907 RSIER 911


>gi|16803286|ref|NP_464771.1| hypothetical protein lmo1246 [Listeria monocytogenes EGD-e]
 gi|224499083|ref|ZP_03667432.1| hypothetical protein LmonF1_05030 [Listeria monocytogenes Finland
           1988]
 gi|224501811|ref|ZP_03670118.1| hypothetical protein LmonFR_04752 [Listeria monocytogenes FSL
           R2-561]
 gi|284801628|ref|YP_003413493.1| hypothetical protein LM5578_1381 [Listeria monocytogenes 08-5578]
 gi|284994770|ref|YP_003416538.1| hypothetical protein LM5923_1334 [Listeria monocytogenes 08-5923]
 gi|16410662|emb|CAC99324.1| lmo1246 [Listeria monocytogenes EGD-e]
 gi|284057190|gb|ADB68131.1| hypothetical protein LM5578_1381 [Listeria monocytogenes 08-5578]
 gi|284060237|gb|ADB71176.1| hypothetical protein LM5923_1334 [Listeria monocytogenes 08-5923]
          Length = 470

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 86/252 (34%), Gaps = 31/252 (12%)

Query: 521 LRPTTIVVSATPGSWELEQ--CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
            +   +  SAT    E++    +      +I        P+       Q ++    +   
Sbjct: 171 KQRQNLFFSAT-MPEEMQDLIKRYQDNPMVIEMASEKTNPI--FHVEMQTDNKEKTLKDV 227

Query: 579 --AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +     ++   TK   ++LT+ L   +++   +H  ++  +R   + D + GK   L
Sbjct: 228 LITENPDSAIIFCNTKNQVDELTDLL---DVKASKIHGGLRQEDRFRAMDDFKSGKSRFL 284

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITK 695
           +  ++   G+D+    LV   D   E     K + +  IGR  R   S K I +  T   
Sbjct: 285 IATDVAGRGIDVDNVSLVINYDLPIE-----KENYVHRIGRTGRAGKSGKAISFVKTNEN 339

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
            +   I+E                I     K++   VI+  + EDA              
Sbjct: 340 PLLRDIEEM-----------LDVTIE----KKRKPTVIEVKVNEDAFRKKQQKRPTIKKA 384

Query: 756 SKKKGKAHLKSL 767
             +K   ++  L
Sbjct: 385 RGEKLNKNIMKL 396


>gi|315633657|ref|ZP_07888947.1| ATP-dependent RNA helicase RhlB [Aggregatibacter segnis ATCC 33393]
 gi|315477699|gb|EFU68441.1| ATP-dependent RNA helicase RhlB [Aggregatibacter segnis ATCC 33393]
          Length = 432

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 118/350 (33%), Gaps = 48/350 (13%)

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTA-MKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
           TG+ I  +  +  +  +H          A +     EL +++             ++  +
Sbjct: 71  TGKTIAFLTALFHHLLTHPTETDKNQPRALILAPTRELAVQIEH---------DAQIFLK 121

Query: 426 ITYDLEMLETTGSC-----QSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTI 480
            T     L   G       ++IEN    L G         + +Y+ +  ++ +D      
Sbjct: 122 TTKFKTALAYGGDGYDKQLKAIENGVDVLIGTTGR-----VIDYV-KQGIIRLD------ 169

Query: 481 PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC 540
            QI  +   +  R   L   GF      D R L  +     +  T++ SAT      E  
Sbjct: 170 -QIQTVVLDEADRMFDL---GFI----RDIRYLLRKCPPPQQRLTMLFSATLSYKVRELA 221

Query: 541 QGIIVE------QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
              + +      +  + TG      E+     Q +       L  +   R ++   TK  
Sbjct: 222 FEDMNDPEYVEIEPEQKTGQQIKE-ELFYPSNQDKIPLLLTLLEEEWPERCIIFANTKHQ 280

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            E +  YL     RV  +  +V   +R+ +++    G  D+LV  ++   GL I E   V
Sbjct: 281 CEAIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILVATDVAARGLHIAEVTHV 340

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
              D         +   +  IGR  R   S + I +A         AI+E
Sbjct: 341 FNYD-----LPDDREDYVHRIGRTGRAGESGISISFACEQYAMNLPAIEE 385


>gi|152013506|sp|Q6BJX6|DHH1_DEBHA RecName: Full=ATP-dependent RNA helicase DHH1
          Length = 516

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 13/147 (8%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++   +    E L + + E      Y H+++    R ++  + R GK  VLV  +LL
Sbjct: 268 NQAIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQHARNKVFHEFRQGKVRVLVCSDLL 327

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
             G+DI    +V   D     F ++  + +  IGR+ R  +  + +   +      L   
Sbjct: 328 TRGIDIQAVNVVINFD-----FPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYNL--- 379

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKI 729
                 + + E   +    P ++ + +
Sbjct: 380 -----YKIEQELGTEIKPIPATIDKSL 401


>gi|146414784|ref|XP_001483362.1| hypothetical protein PGUG_04091 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 433

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 107/307 (34%), Gaps = 30/307 (9%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF-----EEWNCLRPT 524
            L +DE+      +S  +  D  R          LP     + L F     +    L+  
Sbjct: 150 FLVLDEADRL---LSNSFGSDLERCFK------ILPDASKRQTLLFTATVTDAVRALKDK 200

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            +     P        + +  +Q+  P  L    V +  +  +   +++ + L   +   
Sbjct: 201 PVPEGKKPVFI----HEIVSKDQVAIPATLTISYVFV-PSYVKEAYLHNILVLPKYEKAL 255

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V     AE L   L + +IRV  +HSE+   ER   +   R G   VL+  ++   
Sbjct: 256 AIVFVNRTYTAEILRRTLRKLDIRVASLHSEMPQSERTNSLHRFRAGAARVLIATDVASR 315

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE 703
           GLDIP   LV   D             I  +GR AR       +           LAI+ 
Sbjct: 316 GLDIPNVELVVNQD-----IPADPDDYIHRVGRTARAGKKGGSVSIVSEKDVERILAIEN 370

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
                    + +    +N   + ++ + ++     E  A        ++  ++K+K +  
Sbjct: 371 -----HINKKMDLLEEVNDDKIIKESLSIVTAAKRESVADMEKEGFGEKRKINKRKREER 425

Query: 764 LKSLRKQ 770
            +  +K+
Sbjct: 426 TRDSKKR 432


>gi|146100408|ref|XP_001468856.1| ATP-dependent DEAD-box RNA helicase [Leishmania infantum]
 gi|134073225|emb|CAM71946.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania infantum
           JPCM5]
          Length = 405

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 81/239 (33%), Gaps = 38/239 (15%)

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           LPS      L+   ++   P T+   A       +E+     + ++ + +    V+   +
Sbjct: 201 LPSQ-----LQSMLFSATFPVTVKTFAERHLHNPYEINLMDELTLKGVTQYYAFVEERQK 255

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I           + +    Q    I +   +    E L + + +      Y+H+ ++   
Sbjct: 256 IH--------CLNTLFNKLQINQSI-IFCNSVNRVELLAKKITQLGYSCYYIHARMQQQH 306

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  +  D R G    LV  +L+  G+DI    +V   D  K        + +  IGR+ R
Sbjct: 307 RNRVFHDFREGHCRNLVCSDLITRGIDIQAVNVVINFDFPKYS-----ETYLHRIGRSGR 361

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
             +  V +   T      +              +  +  ++  +  + I   IDP L  
Sbjct: 362 FGHLGVAINFVTYDDRYNV--------------YRIEQELD--TEIKPIPAEIDPELYA 404


>gi|50425797|ref|XP_461495.1| DEHA2F26598p [Debaryomyces hansenii CBS767]
 gi|49657164|emb|CAG89921.1| DEHA2F26598p [Debaryomyces hansenii]
          Length = 474

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 13/147 (8%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++   +    E L + + E      Y H+++    R ++  + R GK  VLV  +LL
Sbjct: 226 NQAIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQHARNKVFHEFRQGKVRVLVCSDLL 285

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
             G+DI    +V   D     F ++  + +  IGR+ R  +  + +   +      L   
Sbjct: 286 TRGIDIQAVNVVINFD-----FPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYNL--- 337

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKI 729
                 + + E   +    P ++ + +
Sbjct: 338 -----YKIEQELGTEIKPIPATIDKSL 359


>gi|29829640|ref|NP_824274.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29606748|dbj|BAC70809.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 759

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 15/176 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE------ 574
           R  T++ SAT PG+      + +     IR T   D    +R+    +   ++       
Sbjct: 158 RRQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVRNTAQFIYRAHNMDKPEMV 217

Query: 575 --INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +GL  ++   TKR A DL + L +R      +H ++    R + +R  R GK
Sbjct: 218 SRILQADGRGL-AMVFCRTKRTAADLADQLQQRGFASGAVHGDLGQGAREQALRAFRNGK 276

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            DVLV  ++   G+D+     V    +        + + +  IGR  R     + +
Sbjct: 277 VDVLVCTDVAARGIDVEGVTHVINYQS-----PEDEKTYLHRIGRTGRAGAKGIAI 327


>gi|22330935|ref|NP_187583.2| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75328099|sp|Q84TG1|RH57_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 57
 gi|29028778|gb|AAO64768.1| At3g09720 [Arabidopsis thaliana]
 gi|110742885|dbj|BAE99340.1| RNA helicase like protein [Arabidopsis thaliana]
 gi|332641282|gb|AEE74803.1| DEAD-box ATP-dependent RNA helicase 57 [Arabidopsis thaliana]
          Length = 541

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L + L   NIR   +HS++   ER   +   R G+  VL+  +++  
Sbjct: 383 VLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIAR 442

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           G+D      V   D     F  S ++ I  IGR+ R   S   I +           I  
Sbjct: 443 GMDFKGINCVINYD-----FPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIAN 497

Query: 704 T 704
           T
Sbjct: 498 T 498


>gi|332289731|ref|YP_004420583.1| ATP-dependent RNA helicase SrmB [Gallibacterium anatis UMN179]
 gi|330432627|gb|AEC17686.1| ATP-dependent RNA helicase SrmB [Gallibacterium anatis UMN179]
          Length = 447

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 67/191 (35%), Gaps = 32/191 (16%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR--SARTQVEDVYDEINLAA 579
           R  T++ SAT    EL                L+D PVE+    +R + + +      A 
Sbjct: 181 RKQTMLFSATLEGEELNS----------FAQRLLDNPVEVNAEPSRRERKKIQQWYYHAD 230

Query: 580 QQGLRI---------------LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
            +  +I               ++ V  +    +L E L +R IR  Y+  E+   +R   
Sbjct: 231 SKEHKIKLLARVIVDEKVSKGIVFVRHREEVRELAEILRKRGIRSTYLEGEMAQTQRNNA 290

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I  LR G   +LV  N+   G+DI +   V   D        +    +  IGR AR    
Sbjct: 291 IEKLRDGVVTILVATNVAARGIDIDDISHVFNFD-----LPYNADVYLHRIGRTARAGKK 345

Query: 685 KVILYADTITK 695
              +       
Sbjct: 346 GCAISFVEAHD 356


>gi|302692416|ref|XP_003035887.1| hypothetical protein SCHCODRAFT_65679 [Schizophyllum commune H4-8]
 gi|300109583|gb|EFJ00985.1| hypothetical protein SCHCODRAFT_65679 [Schizophyllum commune H4-8]
          Length = 620

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 82/243 (33%), Gaps = 22/243 (9%)

Query: 471 LFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEE-------WNCLRP 523
           + +      I  +        + K    +   R+        L FEE       +   + 
Sbjct: 319 IVIATPGRLIDMLEKKRLTFNNCKYMCMDEADRM------VDLGFEEDVRNIMSYFKRQR 372

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV----DPPVEIRSARTQVEDVYDEINLAA 579
            T++ SAT      +  Q  +++ I+   G         +++     Q   +   +    
Sbjct: 373 QTLLFSATMPQKIRDFAQQSLIQPILINVGRAGAANLDVLQVVEYVKQEAKMVYLLECLQ 432

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +    +++    K   +D+ EYL  + +    +H      ER   I+  + G  DV+V  
Sbjct: 433 KTPPPVIIFSENKNEVDDIQEYLLLKGVEAVAIHGSKSQEERQYAIKSFKSGAKDVMVAS 492

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            +  +GLD  E   V I    KE         +  IGR  R+  + +      +    Q 
Sbjct: 493 GVASKGLDFNEIQHVIIFTMPKE-----IEDYVHQIGRTGRSGKTGIATTFVNMNTPEQT 547

Query: 700 AID 702
            +D
Sbjct: 548 LLD 550


>gi|297833410|ref|XP_002884587.1| hypothetical protein ARALYDRAFT_477953 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330427|gb|EFH60846.1| hypothetical protein ARALYDRAFT_477953 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1097

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 70/178 (39%), Gaps = 16/178 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP---------VEIRSARTQVEDVY 572
           R  T++ +AT      +    ++V  +    G VD           VE+     + E   
Sbjct: 613 RRQTLMYTATWPKEVRKIASDLLVNPVQVNIGKVDELAANKAITQYVEVVPQMEK-ERRL 671

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           ++I  + ++G ++++   TKR+ + L   +         +H +    ER  ++   R GK
Sbjct: 672 EQILRSQERGSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLSQFRSGK 730

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
             +L+  ++   GLDI +  +V   D     F       +  IGR   +  +   ++ 
Sbjct: 731 SCILIATDVAARGLDIKDIRVVITYD-----FPTGVEDYVHRIGRTRSSWCNWSCIHF 783


>gi|221117076|ref|XP_002155771.1| PREDICTED: vasa-related protein CnVAS2 [Hydra magnipapillata]
          Length = 890

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V  KR A+ L  +L ++N     ++++    ER   ++D R G   +LV   +  
Sbjct: 705 RTLVFVEKKRDADFLANFLSQKNFPATSLNADRTQEERESALKDFRNGIAPILVATAVAA 764

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITK 695
            GLDI +   V   D  K+         +  IGR  R  N  K   + D    
Sbjct: 765 RGLDINDVKHVINYDLPKD-----ANEYVHRIGRTGRIGNKGKATSFFDLDRD 812


>gi|254487565|ref|ZP_05100770.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
 gi|214044434|gb|EEB85072.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
          Length = 533

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 80/257 (31%), Gaps = 29/257 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRP----TGLVDPPVEI-----------RSARTQV 568
            T+  SAT    E+E+     +   +R            +E            R A  + 
Sbjct: 180 QTLFFSATMAP-EIERITNTFLSNPVRIEVARQATTGENIEQGVLMFKASRKDREATEKR 238

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + +   I+    +    ++    K   + + + L +       +H ++   +R + +   
Sbjct: 239 KVLRALIDAEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGF 298

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G    LV  ++   GLD+P    V   D             +  IGR  R       +
Sbjct: 299 RNGDLRFLVASDVAARGLDVPSVSHVYNFDV-----PSHAEDYVHRIGRTGRAGRDGKAI 353

Query: 689 YADTITKSIQLAIDETTR--RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
                    +  +++  R  +RE     N      P    ++     D    EDA     
Sbjct: 354 MICVPRD--EKNLEDVERLVQREIPRLDNPLGGDAPAETTKE----ADAPKAEDAPKAED 407

Query: 747 SIDAQQLSLSKKKGKAH 763
           +   ++   S+ + +  
Sbjct: 408 APKTEKPKRSRTRSRKK 424


>gi|195440590|ref|XP_002068123.1| GK12420 [Drosophila willistoni]
 gi|194164208|gb|EDW79109.1| GK12420 [Drosophila willistoni]
          Length = 541

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 68/184 (36%), Gaps = 24/184 (13%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G   VL+   L+  
Sbjct: 371 VLIFVQSKDRAKQLFEELLYDGINVDVIHAERTQHQRDNCVRAFREGNIWVLICTELMGR 430

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+D     LV   D     F  +  S I  IGR  R       +   T   +  L     
Sbjct: 431 GIDFKGVNLVINYD-----FPPTTISYIHRIGRTGRAGRPGRAITFFTQEDTANL----- 480

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
             R   Q+  N      P+            + ++  + +   + A++  L +++    +
Sbjct: 481 --RSIAQIIKNSG-GTVPEY----------MLQMKKVSKSEAKMRAKK-PLDREEISTKI 526

Query: 765 KSLR 768
           K + 
Sbjct: 527 KPVE 530


>gi|184200491|ref|YP_001854698.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
 gi|183580721|dbj|BAG29192.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
          Length = 555

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 7/135 (5%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           ++V   I  A  +G R ++   TKR A  L + L  R      +H ++    R + +R  
Sbjct: 270 DEVVARILQAEGRG-RSIIFTRTKRAAAKLADELIHRGFAAAPLHGDLGQGAREQALRAF 328

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           R  K DVLV  ++   G+D+ +   V             + + +   GR  R  N    I
Sbjct: 329 RNSKVDVLVATDVAARGIDVEDVTHVINFQC-----PEDEKTYLHRTGRTGRAGNKGTAI 383

Query: 688 LYADTITKSIQLAID 702
            + D         ID
Sbjct: 384 TFVDWDDVPRWRLID 398


>gi|170754257|ref|YP_001782408.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str.
           Okra]
 gi|169119469|gb|ACA43305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum B1 str. Okra]
          Length = 524

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 88/253 (34%), Gaps = 26/253 (10%)

Query: 523 PTTIVVSAT-PGSWE---LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
             T++ SAT P   +   L   +  +    I    L    +       + +D  + I   
Sbjct: 180 KQTMLFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRI 239

Query: 579 A--QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              ++    ++   TKR  ++L E +  +   V  MH ++   +RI  ++  +    + L
Sbjct: 240 IDSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFL 299

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+D+     V   D       +   S +  IGR  R           T  + 
Sbjct: 300 VATDVAARGIDVENISHVINYD-----IPQDAESYVHRIGRTGRADKEGTAYSLVTPREV 354

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
             +          +Q+E      I    + +K +  ++ IL +        I ++     
Sbjct: 355 SSI----------RQIER-----IIKSKITKKELPTLEDILEKKYDNLLNDITSKIEENK 399

Query: 757 KKKGKAHLKSLRK 769
            +K    +K+L +
Sbjct: 400 YEKFMPMVKTLEQ 412


>gi|254237339|ref|ZP_04930662.1| hypothetical protein PACG_03411 [Pseudomonas aeruginosa C3719]
 gi|126169270|gb|EAZ54781.1| hypothetical protein PACG_03411 [Pseudomonas aeruginosa C3719]
          Length = 639

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 11/193 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGII--VEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +   ++ SAT     ++    ++   E+I + P       +E R  R         +   
Sbjct: 184 KRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHL 243

Query: 579 AQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              G   ++L+   TK  A  L EYL +  +    +H       R + + D +     +L
Sbjct: 244 VTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRIL 303

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI +   V   +         +   +  IGR  R   S   I       +
Sbjct: 304 VATDIAARGLDIDQLPHVVNYE-----LPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEE 358

Query: 696 SIQLAIDETTRRR 708
            +  AI++ TR+R
Sbjct: 359 KLLKAIEKMTRQR 371


>gi|220929887|ref|YP_002506796.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
 gi|220000215|gb|ACL76816.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
           H10]
          Length = 565

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 65/171 (38%), Gaps = 7/171 (4%)

Query: 524 TTIVVSATPGSWELE---QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            TI+ SAT     LE   + Q   V   I    L  P +E      +     + ++    
Sbjct: 180 QTILFSATMPKEILELTKKYQKNPVHIKIAHKELTVPSIEQYYLEVKESAKLEVLSRLID 239

Query: 581 QG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                  L+   TK+  ++LT  L  R      +H +++   R +++   R G FD+L+ 
Sbjct: 240 TNDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMNLFRKGNFDILIA 299

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            ++   G+D+ +   V   D   +         I   GRA R   +   +Y
Sbjct: 300 TDVAARGIDVDDVEAVFNYDLPNDD--EYYVHRIGRTGRAGRTGKAFTFIY 348


>gi|268565371|ref|XP_002639425.1| Hypothetical protein CBG04018 [Caenorhabditis briggsae]
 gi|187036206|emb|CAP24812.1| hypothetical protein CBG_04018 [Caenorhabditis briggsae AF16]
          Length = 393

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 23/189 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
             +++SAT     LE     + + I        +   G+    V +     + + + D  
Sbjct: 202 QVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLY 261

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +          LT  +    + LT+ + E N  V  MH +++  +R E++++ R G   V
Sbjct: 262 DT---------LTSSSFLKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGNTRV 312

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           L+  ++   GLD+P+  LV   D        ++   I  IGR+ R     V I +     
Sbjct: 313 LISTDVWARGLDVPQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVKQDD 367

Query: 695 KSIQLAIDE 703
             I   I++
Sbjct: 368 VRILRDIEQ 376


>gi|145638288|ref|ZP_01793898.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
 gi|145272617|gb|EDK12524.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
          Length = 415

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 90/252 (35%), Gaps = 34/252 (13%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +DE  V +         +  R   L   GF        R +R+    C 
Sbjct: 145 IDYV-KQGVIGLDEIQVVV-------LDEADRMFDL---GFI-------RDIRYLLRKCP 186

Query: 522 RPT---TIVVSATPGSWELEQCQGIIVE------QIIRPTGLVDPPVEIRSARTQVEDVY 572
            P    T++ SAT      E     + +      +  + TG      E+     Q +   
Sbjct: 187 APQARLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKE-ELFYPSNQDKMAL 245

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               +  +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G 
Sbjct: 246 LLTLMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGD 305

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
            D+LV  ++   GL I +   V   D         +   +  IGR  R   S V I +A 
Sbjct: 306 LDILVATDVAARGLHISDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFAC 360

Query: 692 TITKSIQLAIDE 703
                   AI+E
Sbjct: 361 EEYAMNLPAIEE 372


>gi|322502866|emb|CBZ37948.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 405

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 81/239 (33%), Gaps = 38/239 (15%)

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           LPS      L+   ++   P T+   A       +E+     + ++ + +    V+   +
Sbjct: 201 LPSQ-----LQSMLFSATFPVTVKTFAERHLHNPYEINLMDELTLKGVTQYYAFVEERQK 255

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           I           + +    Q    I +   +    E L + + +      Y+H+ ++   
Sbjct: 256 IH--------CLNTLFNKLQINQSI-IFCNSVNRVELLAKKITQLGYSCYYIHARMQQQH 306

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  +  D R G    LV  +L+  G+DI    +V   D  K        + +  IGR+ R
Sbjct: 307 RNRVFHDFREGHCRNLVCSDLITRGIDIQAVNVVINFDFPKY-----AETYLHRIGRSGR 361

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
             +  V +   T      +              +  +  ++  +  + I   IDP L  
Sbjct: 362 FGHLGVAINFVTYDDRYNV--------------YRIEQELD--TEIKPIPAEIDPELYA 404


>gi|309973610|gb|ADO96811.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae R2846]
          Length = 418

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 88/249 (35%), Gaps = 28/249 (11%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +DE  V +         +  R   L   GF      D R L  +     
Sbjct: 148 IDYV-KQGVIGLDEIQVVV-------LDEADRMFDL---GFI----RDIRYLLRKCPTPQ 192

Query: 522 RPTTIVVSATPGSWELEQCQGIIVE------QIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
              T++ SAT      E     + +      +  + TG      E+     Q +      
Sbjct: 193 VRLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKE-ELFYPSNQDKMALLLT 251

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +  +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G  D+
Sbjct: 252 LMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDI 311

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GL I +   V   D         +   +  IGR  R   S V I +A    
Sbjct: 312 LVATDVAARGLHISDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFACEEY 366

Query: 695 KSIQLAIDE 703
                AI+E
Sbjct: 367 AMNLPAIEE 375


>gi|300312721|ref|YP_003776813.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300075506|gb|ADJ64905.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 510

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR A+ + + L         +H ++    R   +  LR G+  +LV  ++  
Sbjct: 270 QAVIFTATKRDADTIADRLNIAGFAAAALHGDMHQGARNRTLNSLRRGQVRMLVATDVAA 329

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAID 702
            G+D+P    V   D  K          +  IGR  R   + V +      + +Q   I+
Sbjct: 330 RGIDVPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRNGVAISLVNHAEGMQVKRIE 384

Query: 703 E 703
            
Sbjct: 385 R 385


>gi|254585603|ref|XP_002498369.1| ZYRO0G08580p [Zygosaccharomyces rouxii]
 gi|238941263|emb|CAR29436.1| ZYRO0G08580p [Zygosaccharomyces rouxii]
          Length = 539

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 89/251 (35%), Gaps = 33/251 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         ++E  V + Q+  +   +  R     E GF      ++      
Sbjct: 254 TPGRLLD--------LINEQSVDLSQVQYLVLDEADRM---LEKGFE-----EDIKNIIN 297

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---------IRPTGLVDPPVEI---RSA 564
           + N     T++ +AT      E     + + +         +     +   VE+   R  
Sbjct: 298 QTNSRDRQTLMFTATWPKEVRELASTFMRDPVKVSIGNRDELSANKRITQIVEVIEPRQK 357

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++ ++  +    A++  ++L+  L K+ A  +   L      V  +H ++   +R   
Sbjct: 358 DRKLLELLRKYQSGAKKDDKVLIFALYKKEASRVENNLKYNGYDVAAIHGDLSQQQRTSA 417

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + D + GK ++L+  ++   GLDIP    V  L      F  +    +  IGR  R   +
Sbjct: 418 LNDFKAGKSNLLLATDVAARGLDIPNVKTVINL-----TFPLTVEDYVHRIGRTGRAGQT 472

Query: 685 KVILYADTITK 695
                  T  +
Sbjct: 473 GTAHTLFTDNE 483


>gi|194871760|ref|XP_001972900.1| GG15782 [Drosophila erecta]
 gi|190654683|gb|EDV51926.1| GG15782 [Drosophila erecta]
          Length = 592

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    +QGL+  +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G 
Sbjct: 356 MRDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFREGS 415

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
             VL+   L+  G+D     LV   D     F  +  S I  IGR  R       I +  
Sbjct: 416 IWVLICTELMGRGIDFKGVNLVINYD-----FPPTTISYIHRIGRTGRAGRPGRAITFFT 470

Query: 692 TITKSIQLAI 701
               S   +I
Sbjct: 471 QDDTSNLRSI 480


>gi|12652909|gb|AAH00210.1| DDX50 protein [Homo sapiens]
          Length = 467

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 39/256 (15%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 50  PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 109

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 110 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 168

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 169 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 223

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 224 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 270

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 271 AVDFFRPSAQRLIEEK 286


>gi|85000907|ref|XP_955172.1| DEAD-box family (RNA) helicase [Theileria annulata strain Ankara]
 gi|65303318|emb|CAI75696.1| DEAD-box family (RNA) helicase, putative [Theileria annulata]
          Length = 797

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 66/176 (37%), Gaps = 12/176 (6%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV---DPPVEIR----SARTQVEDVY 572
            +   T++ SAT      +  +  + + I    G V   +  ++ R        +++ + 
Sbjct: 503 KILRQTVMFSATFPKEIQQLAREFLNDYIYLAVGRVGSTNEFIKQRLLYADQDQKIKYLI 562

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             +      G  +L+ V TK+ A+ +  YL   N +   +H +    +R + +   + G 
Sbjct: 563 KLLKDNTNLGGLVLIFVETKKRADLIEGYLLSENFKAVNIHGDRSQEDREKALSLFKAGV 622

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             ++V  ++   GLDI     V   D        +    +  IGR  R  N  +  
Sbjct: 623 RPIMVATDVAARGLDISNITHVINCD-----LPTNIDDYVHRIGRTGRAGNIGIAT 673


>gi|77413593|ref|ZP_00789780.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 515]
 gi|77160359|gb|EAO71483.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 515]
          Length = 528

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 93/263 (35%), Gaps = 23/263 (8%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEI 575
              T++ SAT   P      +         I+ T L +  V+   +R    +  D    +
Sbjct: 174 ARQTLLFSATMPDPIKRIGVKFMKNPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRL 233

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ +IRD +    D+
Sbjct: 234 MD-VDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDI 292

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +
Sbjct: 293 LVATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVSPNE 347

Query: 696 SIQLAIDET-TRRREKQL-------EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
              L I E  T++R   +           K  +  + +     +       +      + 
Sbjct: 348 MGYLTIIENLTKKRMTGMKPATASEAFQAKKKVALKRIARDFEDQELVSKFDKFKADALE 407

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQ 770
           +  Q    + ++   ++ SL  Q
Sbjct: 408 LATQY---TPEELALYVLSLTVQ 427


>gi|209518020|ref|ZP_03266851.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209501524|gb|EEA01549.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 532

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 22/165 (13%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR---------------ILLTVLTKRMAEDLTEY 601
             +EI     Q  ++   ++    +  +                ++   TK  A+ L   
Sbjct: 260 ERIEIVQRMEQRTNIAQTVHYVDDRDHKDRLLDHLLRDAGLDQAIVFTATKMDADQLAGR 319

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L +       +H ++    R   IR LR  +  VLV  ++   G+DIP    V   D  K
Sbjct: 320 LADAGFESAALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPK 379

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
                     +  IGR  R   S V +    +  + Q A+    R
Sbjct: 380 F-----AEDYVHRIGRTGRAGRSGVAVSL--VHHAEQGALKRIER 417


>gi|195166521|ref|XP_002024083.1| GL22752 [Drosophila persimilis]
 gi|194107438|gb|EDW29481.1| GL22752 [Drosophila persimilis]
          Length = 597

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    +QGL+  +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G 
Sbjct: 361 MRNLVRQGLQPPVLVFVQSKDRAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFREGN 420

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
             VL+   L+  G+D     LV   D     F  +  S I  IGR  R       I +  
Sbjct: 421 IWVLICTELMGRGIDFKGVNLVINYD-----FPPTTISYIHRIGRTGRAGRPGRAITFFT 475

Query: 692 TITKSIQLAI 701
               +   +I
Sbjct: 476 QDDTANLRSI 485


>gi|161502252|ref|YP_001569364.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863599|gb|ABX20222.1| hypothetical protein SARI_00280 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 444

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 73/197 (37%), Gaps = 20/197 (10%)

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           +    L    + VSATP + E ++          R          ++    Q +      
Sbjct: 198 DFAERLLEDPVEVSATPSTRERKKIHQW----YYRADNFEHKVALLKHLLKQDDAT---- 249

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +V
Sbjct: 250 --------RSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNV 301

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+DIP+   V   D  + G   +    I   GRA R   +  ++ A     
Sbjct: 302 LVATDVAARGIDIPDVSHVINFDMPRSG--DTYLHRIGRTGRAGRKGTAISLVEAHDHLL 359

Query: 696 SIQ--LAIDETTRRREK 710
            ++    I+E  + R  
Sbjct: 360 LLKIGRYIEEPLKARVI 376


>gi|25027815|ref|NP_737869.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens
           YS-314]
 gi|259506205|ref|ZP_05749107.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
 gi|23493098|dbj|BAC18069.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens
           YS-314]
 gi|259166182|gb|EEW50736.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
          Length = 736

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++ V TK   E++ E L  R      ++ ++   +R   +  L+ G+ D+LV  ++ 
Sbjct: 345 EAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVA 404

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           S +  IGR  R   +   IL+     + +  +I
Sbjct: 405 ARGLDVERISHVLNYD-----IPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSI 459

Query: 702 DE 703
           + 
Sbjct: 460 ER 461


>gi|313157396|gb|EFR56819.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
          Length = 473

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 19/188 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---------EDVYDE 574
            T+  SAT  S  +     ++ + +      V PP  +    +Q          +D+   
Sbjct: 181 QTLFFSATMPSDIVTLANSMLHDPV---HVTVTPPASVVETISQSVMFAEKAEKKDLLIS 237

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +     +G  +L+   TK  A+ +   L +  I  R +H +     R   + D R G+  
Sbjct: 238 LLRERSEG-SVLVFSRTKHGADRIARILTKAGIEGRAIHGDKSQGARERAMNDFRAGRCR 296

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           VL+  ++   G+DI E  LV   D           + +  IGR  R  +    I +    
Sbjct: 297 VLIATDIAARGIDISELPLVINYD-----LPEVAETYVHRIGRTGRAGHDGTAIAFCSED 351

Query: 694 TKSIQLAI 701
            + +   I
Sbjct: 352 ERPLLKDI 359


>gi|312214509|emb|CBX94500.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1118

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 82/231 (35%), Gaps = 11/231 (4%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTI--PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
            P  L +++  ++LL       T+       +  G       L    F       +    
Sbjct: 265 TPGRLMDFMSNNALLSFKRLKFTVIDEADELLSEGWDEIMEKL----FAGADMNTDADHT 320

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           +  ++   P +         +  E    I V ++      +   +       + + ++D 
Sbjct: 321 YLMFSATFPKS--ARKLARDYMDEDYVRIKVGRVGSTHENIKQQIIYVEESAKNQALFDL 378

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I   ++   R L+   +K  A+ + ++LY + + V  +HS+    ER + +R  R G+  
Sbjct: 379 I--FSEGPQRTLVFTNSKVKADVVDDFLYNKGLPVTSIHSDRTQREREDALRSFRTGRCP 436

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           ++V   +   GLD+     V   D          T  +  IGR AR  N  
Sbjct: 437 IMVATGVTARGLDVANVKHVINYDLPST-QHSGITEYVHRIGRTARIGNEG 486


>gi|188589982|ref|YP_001922621.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251781234|ref|ZP_04824150.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188500263|gb|ACD53399.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243081681|gb|EES47742.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 526

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 69/186 (37%), Gaps = 11/186 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TK+  ++L E L  +   V  MH ++  + R+  ++  + G  ++L+  ++   
Sbjct: 246 AIIFCRTKKGVDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLIATDVAAR 305

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-SIQLAIDE 703
           G+D+     V   D       +   S +  IGR  R   +       +  +  +   I  
Sbjct: 306 GIDVDGITHVINYD-----LPQDVESYVHRIGRTGRANRTGTAYSLVSPKELGMLKQIQR 360

Query: 704 TTRRREKQLEH----NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
            T+      +     N+ H+    ++  +I E ID         + I ++     +S   
Sbjct: 361 VTK-STITEKSVPTANEIHSRKFTNIMNEIKETIDSGDFSTFVPSAIELNEAYDPISIIA 419

Query: 760 GKAHLK 765
               +K
Sbjct: 420 SLMKIK 425


>gi|126698411|ref|YP_001087308.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|306519448|ref|ZP_07405795.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-32g58]
 gi|115249848|emb|CAJ67665.1| putative ATP-dependent RNA helicase [Clostridium difficile]
          Length = 369

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 72/203 (35%), Gaps = 19/203 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA-- 579
           +  T+  SAT  S   +         ++    +    + + + + +V +  D   L A  
Sbjct: 174 KKQTLCFSATINSQVKKLAYRYTKNPVV--VSIQKEEITLNNIKQEVVETTDRKKLDALC 231

Query: 580 -----QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                      ++   TKR  ++L E L  R    + +HS++   +R  I++  R     
Sbjct: 232 KVLDEDNPFMAIIFCRTKRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQ 291

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTI 693
            L+  ++   GLDI     +   D        +    I  IGR  R         + D  
Sbjct: 292 YLIATDVASRGLDISGVSHIYNYD-----LPETPEDYIHRIGRTGRAGEEGYTCAFIDPK 346

Query: 694 TKSI----QLAIDETTRRREKQL 712
            + +    + AI+    RR  +L
Sbjct: 347 NERMLSEIETAIESKISRRIIEL 369


>gi|42518569|ref|NP_964499.1| RNA helicase [Lactobacillus johnsonii NCC 533]
 gi|41582854|gb|AAS08465.1| probable RNA helicase [Lactobacillus johnsonii NCC 533]
          Length = 461

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 12/151 (7%)

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           II PT + +  +++ S     +       L   Q    L+   TK+  ++LT+YL E+ +
Sbjct: 217 IIAPT-IQNDLIDVGSRD---KKSILYKLLTMGQPYLALVFANTKKTVDELTDYLEEQGL 272

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H  +   ER  IIR +R G++  +V  +L   G+D+P   LV   +  K+     
Sbjct: 273 KVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPGVSLVVNYEIPKD----- 327

Query: 668 KTSLIQTIGRAARN---VNSKVILYADTITK 695
              +I  IGR  RN    ++  ++Y D +++
Sbjct: 328 LEFVIHRIGRTGRNGLEGHAITLIYDDEMSQ 358


>gi|70725957|ref|YP_252871.1| hypothetical protein SH0956 [Staphylococcus haemolyticus JCSC1435]
 gi|123660708|sp|Q4L7W0|Y956_STAHJ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SH0956
 gi|68446681|dbj|BAE04265.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 503

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 80/198 (40%), Gaps = 25/198 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDVYDEINLA---- 578
            T++ SAT     + +    +V+Q ++   +V     E+  +  Q+++ Y  +       
Sbjct: 177 QTMLFSAT-----MPKAIQTLVQQFMKSPQIVKTMNNEM--SDPQIDEYYTIVKELEKFD 229

Query: 579 -------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                    Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  
Sbjct: 230 TFTNFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKND 289

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
           + D+LV  ++   GLDI     V   D       +   S    IGR  R     + + + 
Sbjct: 290 QIDILVATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFV 344

Query: 691 DTITKSIQLAIDETTRRR 708
           + I       I+++  RR
Sbjct: 345 NPIEMDYIRQIEDSNGRR 362


>gi|665989|dbj|BAA11693.1| deaD [Bacillus subtilis]
          Length = 479

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 22/240 (9%)

Query: 525 TIVVSAT-PGSWE-LEQCQGIIVEQI-IRPTGLVDPPVE-----IRSARTQVEDVYDEIN 576
           T++ SAT P   E L +      E I ++  GL    +E     +R    +   + D + 
Sbjct: 178 TMLFSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVRE-ENKFSLLKDVLM 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +     ++   TK     LT+ L +       +H  +   +R +++ + + G++  L
Sbjct: 237 --TENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITK 695
           V  ++   G+DI    LV   D   E     K S +   GR  R  N  K I +     K
Sbjct: 295 VATDVAARGIDIENISLVINYDLPLE-----KESYVHRTGRTGRAGNKGKAISFVTAFEK 349

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
                I+E         E  K    + + V  K  E +  +     +  + S +  +  +
Sbjct: 350 RFLADIEE-----YIGFEIPKIEAPSQEEVARKKPEFLAKLNDRPESKKDKSEELNKDIM 404


>gi|328955216|ref|YP_004372549.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans
           PW2]
 gi|328455540|gb|AEB06734.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans
           PW2]
          Length = 618

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 22/198 (11%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----- 550
            + + GF LPS      L   E       T++ SAT     L      +V   +R     
Sbjct: 221 RMLDMGF-LPSVKQIVALTPPE-----RQTLLFSATLDEKTLG-SIRDLVRDPVRVEIAA 273

Query: 551 ---PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
                  VD  V   S  ++ + + + +    +   R+++ + TK  A+     L    I
Sbjct: 274 ATSTADTVDQFVLPVSFDSKNDVLVEVL--KREGASRVIVFMRTKHRADSCCRRLTHAGI 331

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
               +H +    +R   ++  R G+ DVLV  +++  G+DI +   V   D   E     
Sbjct: 332 SAAAIHGDRSQAQRERALKAFRDGRSDVLVATDVIARGIDISDVRYVVNFDVPGE----- 386

Query: 668 KTSLIQTIGRAARNVNSK 685
               I  IGR  R     
Sbjct: 387 PIDYIHRIGRTGRAGEVG 404


>gi|323348660|gb|EGA82903.1| Dbp3p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 290

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 86/244 (35%), Gaps = 33/244 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         + E  V + Q++ +   +  R     E GF      ++      
Sbjct: 64  TPGRLLD--------LLQEGSVDLSQVNYLVLDEADRM---LEKGFE-----EDIKNIIR 107

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---------IRPTGLVDPPVEIRSARTQ 567
           E +  +  T++ +AT      E     +   I         +     +   VE+   R +
Sbjct: 108 ETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGK 167

Query: 568 VEDVYDEINLA---AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
              + + +       ++  ++L+  L K+ A  +   L      V  +H ++   +R + 
Sbjct: 168 ERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQA 227

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + + GK ++L+  ++   GLDIP    V  L      F  +    +  IGR  R   +
Sbjct: 228 LNEFKSGKSNLLLATDVAARGLDIPNVKTVINL-----TFPLTVEDYVHRIGRTGRAGQT 282

Query: 685 KVIL 688
               
Sbjct: 283 GTAH 286


>gi|91772311|ref|YP_565003.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
           6242]
 gi|91711326|gb|ABE51253.1| DEAD-box RNA helicase [Methanococcoides burtonii DSM 6242]
          Length = 463

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 78/249 (31%), Gaps = 45/249 (18%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         + + H+ +  +      +  R     + GF       N   +  
Sbjct: 131 TPGRLLD--------LIQQGHIKLSNVEYFVLDEADRM---LDMGFL------NDVNKIV 173

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI- 575
           +    +  ++  SAT             +  + R        VE+    T VE +   I 
Sbjct: 174 DMLPKKRQSLFFSATMSPE---------ISTLARKMLSNPAQVEVTPQATTVERIEQFIF 224

Query: 576 -------------NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
                         L  +    +L+   TK  A  +TE L + NI    +H       R 
Sbjct: 225 FVDSDNKNELLLHLLRGEHLDCVLVFTRTKHRANKVTEMLNKSNINAGAIHGSKSQTHRT 284

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           + +++ + G+  VLV  ++   G+DI +   V   D           S +  IGR AR  
Sbjct: 285 KTLQNFKSGQLRVLVATDIAARGIDIEDISHVINYD-----LPNIPESYVHRIGRTARAG 339

Query: 683 NSKVILYAD 691
                    
Sbjct: 340 AEGTAYSFC 348


>gi|66547453|ref|XP_624946.1| PREDICTED: DEAD-box helicase Dbp80 [Apis mellifera]
          Length = 475

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 81/202 (40%), Gaps = 10/202 (4%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDV------YD 573
                +  SAT     ++  + I+    IIR     +    I+    + +D+        
Sbjct: 262 RTCQMMFFSATYEPEVMKFAEIIVNNPLIIRLLKEEETLDNIKQYYVKCKDLDEKYAAIT 321

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I      G   ++   T++ A  L E + +    V  +  E+   +RI ++   R G  
Sbjct: 322 NIYGVITIGQ-AIIFCHTRKTANWLAEKMTKDGHAVAVLSGELTVEQRISVLDRFRAGLE 380

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT-SLIQTIGRAARNVNSKVILYADT 692
            VL+  N+L  G+D+ +  +V   D   +   ++   + +  IGRA R   S + +    
Sbjct: 381 KVLITTNVLARGIDVEQVTIVVNFDLPMDQNRQADCETYLHRIGRAGRFGKSGIAINLVD 440

Query: 693 ITKSIQLAIDETTRRREKQLEH 714
            + ++Q+  D   +   K++++
Sbjct: 441 SSHAMQICKD-IEKHFAKKIKY 461


>gi|307729303|ref|YP_003906527.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307583838|gb|ADN57236.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 530

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 25/198 (12%)

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVD---PPVEIRSARTQVEDVYDEINLAAQQGL 583
           +V+ATP + +       +  +I   TG +      +EI     Q  ++   ++    +  
Sbjct: 239 IVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNIAQTVHYVDDRDH 298

Query: 584 R---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +                ++   TK  A+ L   L +       +H ++    R   IR L
Sbjct: 299 KDRLLDHLLRDAGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTIRAL 358

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R  +  VLV  ++   G+DIP    V   D  K          +  IGR  R   S + +
Sbjct: 359 RERRVRVLVATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGIAV 413

Query: 689 YADTITKSIQLAIDETTR 706
               +  + Q A+    R
Sbjct: 414 SL--VHHAEQGALKRIER 429


>gi|187778617|ref|ZP_02995090.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
           15579]
 gi|187772242|gb|EDU36044.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
           15579]
 gi|322807112|emb|CBZ04686.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
          Length = 524

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 88/253 (34%), Gaps = 26/253 (10%)

Query: 523 PTTIVVSAT-PGSWE---LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
             T++ SAT P   +   L   +  +    I    L    +       + +D  + I   
Sbjct: 180 KQTMLFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRI 239

Query: 579 A--QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              ++    ++   TKR  ++L E +  +   V  MH ++   +RI  ++  +    + L
Sbjct: 240 IDSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFL 299

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+D+     V   D       +   S +  IGR  R           T  + 
Sbjct: 300 VATDVAARGIDVENISHVINYD-----IPQDAESYVHRIGRTGRADKEGTAYSLVTPREV 354

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
             +          +Q+E      I    + +K +  ++ IL +        I ++     
Sbjct: 355 SSI----------RQIER-----IIKSKITKKELPTLEDILEKKYDNLLNDITSKIEENK 399

Query: 757 KKKGKAHLKSLRK 769
            +K    +K+L +
Sbjct: 400 YEKFMPMVKTLEQ 412


>gi|163750030|ref|ZP_02157274.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161330304|gb|EDQ01285.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 436

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 521 LRPTTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINL 577
               T++ SAT     + L Q      ++I +         +E R      +     I  
Sbjct: 205 KTRQTLLFSATFDESLYGLSQSLLRDPKRIEVGERNAAAVEIEQRVYAVDSDRKLALITH 264

Query: 578 AAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             + G   ++L+    K  A+ L   L +  I  +  H ++    R ++++  + G+  V
Sbjct: 265 LIESGKLQQVLIFSRKKVAADKLAANLTKAGIGAQAFHGDLSQGAREKVLQSFKDGEVRV 324

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   G+DI +   V   +             +  IGR  R  N  V I       
Sbjct: 325 LVATDVAARGIDIIDLNYVVNYE-----LPYKAEDYVHRIGRTGRAGNKGVAITLLCRED 379

Query: 695 KSIQLAIDETTRRREKQL 712
           + +   ++    +R  Q 
Sbjct: 380 EHLLEEVEVVLDKRLPQQ 397


>gi|70728927|ref|YP_258676.1| ATP-dependent RNA helicase SrmB [Pseudomonas fluorescens Pf-5]
 gi|68343226|gb|AAY90832.1| ATP-dependent RNA helicase SrmB [Pseudomonas fluorescens Pf-5]
          Length = 473

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/307 (17%), Positives = 104/307 (33%), Gaps = 34/307 (11%)

Query: 471 LFVDESHVTIPQISGMYRGDFH-------RKATLAEYGFRLPSCMDNRPLRFEEWNCLRP 523
           + +      + Q++                   + + GF      D + L  E  N  R 
Sbjct: 151 ILIGTPGRMLEQLNAGNLDLKEVEVLVLDEADRMLDMGF----AEDVQRLVDECPN--RQ 204

Query: 524 TTIVVSATPG--------SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT G        +  L   + + +  + +        +         E + + +
Sbjct: 205 QTMLFSATTGGSGLREMVAKVLNNPEHLQLNSVSQLNETTRQQIITADHNQHKEQIVNWL 264

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A +   + ++   T+ MA+ +   L  ++ +   +H E    +R   I  L+ G   +
Sbjct: 265 L-ANETYQKAIVFTNTRAMADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKI 323

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYAD 691
           LV  ++   GLD+    LV   D  + G        +  IGR  R  N      +I + D
Sbjct: 324 LVATDVAARGLDVDGLDLVINFDMPRSG-----DEYVHRIGRTGRAGNDGLAISLICHGD 378

Query: 692 T-ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
             +  SI+  + ++  RR  +          P+ VK     V       DA        A
Sbjct: 379 WNLMSSIERYLKQSFERRTIKEVKGTYSG--PKKVKASGKAVGVKKKKTDAKGDKKKAVA 436

Query: 751 QQLSLSK 757
           +  +  K
Sbjct: 437 KAPTKRK 443


>gi|75321947|sp|Q5Z6G5|RH35B_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 35B
 gi|53793229|dbj|BAD54454.1| putative DEAD-box protein abstrakt [Oryza sativa Japonica Group]
 gi|125598365|gb|EAZ38145.1| hypothetical protein OsJ_22496 [Oryza sativa Japonica Group]
          Length = 619

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 77/206 (37%), Gaps = 17/206 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            L + GF      D+    F+ +   R  T++ SAT         +  +V+ II   G  
Sbjct: 340 RLVDLGFE-----DDIREVFDHFKAQR-QTLLFSATMPEKIQNFAKSALVKPIIVNVGRA 393

Query: 555 ----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + +   +   +    +    +L+    K   + + E+L  + +   
Sbjct: 394 GAANLDVIQEVEYVKEE-ARIIYLLECLQKTPPPVLVFCEHKADVDYIQEFLLLKGVEAV 452

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER +  +  +  + DVLV  ++  +GLDIP+   V   D   E       +
Sbjct: 453 AIHGGKDDEERKDAFKSFKASEKDVLVATDVASKGLDIPDIQHVINYDMPAE-----IEN 507

Query: 671 LIQTIGRAARNVNSKVILYADTITKS 696
            +  IGR  R   + V        ++
Sbjct: 508 YVHRIGRTGRRGKTGVATTFINKNQT 533


>gi|332557965|ref|ZP_08412287.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N]
 gi|332275677|gb|EGJ20992.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N]
          Length = 516

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 82/262 (31%), Gaps = 39/262 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++     LL       T  QI  +   D      + + GF  P       L   
Sbjct: 130 TPGRLLDHFERGKLLL------TGVQIMVVDEADR-----MLDMGFI-PDIERIFSLTP- 176

Query: 517 EWNCLRPTTIVVSATPGSWELEQ---------CQGIIVEQIIRPTGLVDPPVEI------ 561
                   T+  SAT    E+E+          +  +  Q      +    +++      
Sbjct: 177 ----FTRQTLFYSATMAP-EIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKE 231

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           RS   +   +   I    +     ++    K   + + + L +       +H +++  +R
Sbjct: 232 RSFADKRAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQR 291

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           ++ +   R G   +LV  ++   GLDIP    V   D             +  IGR  R 
Sbjct: 292 MKTLDGFRDGSLHLLVASDVAARGLDIPAVSHVFNFDV-----PTHPEDYVHRIGRTGRA 346

Query: 682 VNS-KVILYADTITKSIQLAID 702
               K    A    +    AI+
Sbjct: 347 GRKGKAYTIAVPSDEKHVTAIE 368


>gi|313246316|emb|CBY35237.1| unnamed protein product [Oikopleura dioica]
          Length = 653

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 61/167 (36%), Gaps = 10/167 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV---DPPVEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT            +   I    G V      +  R    Q  +   ++    +
Sbjct: 384 QTLMFSATFPKQIQALASDFLENYIFLAVGRVGSTSANITQRFEYVQETEKVRKLCELLE 443

Query: 581 QGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            G     ++   TK+ A+ L  +L+ER  +   +H +    ER E +   + G+  +LV 
Sbjct: 444 NGQEMLTIVFTETKKGADYLDHFLHERGYQSTCIHGDRNQQEREEAVHLFKSGQTPILVA 503

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             +   GLDIP    V   D   E         +  IGR  R  N+ 
Sbjct: 504 TAVAARGLDIPNVRHVINFDLPSE-----IDEYVHRIGRTGRAGNTG 545


>gi|320009868|gb|ADW04718.1| DEAD/DEAH box helicase domain protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 522

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 17/157 (10%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q  D Y      A +  R+++ + TK   + LT++L    +R   +H      +R   + 
Sbjct: 305 QGADKYATTTEIAARDGRVIMFLDTKHAVDKLTDHLLSSGVRAAALHGGKSQPQRTRTLD 364

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             + G   VLV  N+   G+ +    LV  +D   +         +   GR AR   S  
Sbjct: 365 RFKTGHVTVLVATNVAARGIHVDNLDLVVNVDPPSD-----HKDYLHRGGRTARAGESGS 419

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           ++                 +RR+          I PQ
Sbjct: 420 VVTLVLP-----------NQRRDMTRLM-ADAGITPQ 444


>gi|254381080|ref|ZP_04996445.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194339990|gb|EDX20956.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 508

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 17/157 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D +      A +  R+++ + TK   + LT+ L    +R   +H      +R   +   +
Sbjct: 307 DKHATTTEIAARDGRVIMFLDTKHAVDRLTQDLLSSGVRAAALHGGKSQPQRTRTLAQFK 366

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ +    LV  +D             +   GR AR   S  ++ 
Sbjct: 367 TGHVTVLVATNVAARGIHVDNLDLVVNVDP-----PTDHKDYLHRGGRTARAGESGSVVT 421

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
             T  +            R  Q        I PQ+ +
Sbjct: 422 LVTPNQRR-------DMNRLMQAA-----GIVPQTTQ 446


>gi|158294546|ref|XP_315671.4| AGAP005652-PA [Anopheles gambiae str. PEST]
 gi|157015613|gb|EAA11703.5| AGAP005652-PA [Anopheles gambiae str. PEST]
          Length = 728

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A+   + ++ V TKR  +D+T  +     R   +H +    ER  ++   R G+  +LV 
Sbjct: 355 AEPDTKTIIFVETKRRVDDITRIVNRNGWRAVAIHGDKSQQERDYVLSTFRNGRQGILVA 414

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  +    +  IGR  R+ N+    Y      +  
Sbjct: 415 TDVAARGLDVEDVKFVINYD-----YPSNSEDYVHRIGRTGRSNNTGTA-YTLFTNSNAN 468

Query: 699 LAIDETTRRRE 709
            A D     RE
Sbjct: 469 KANDLINVLRE 479


>gi|126274138|ref|XP_001387431.1| RNA helicase involved in maturation of 18S rRNA [Scheffersomyces
           stipitis CBS 6054]
 gi|146286171|sp|A3GFV3|FAL1_PICST RecName: Full=ATP-dependent RNA helicase FAL1
 gi|126213301|gb|EAZ63408.1| RNA helicase involved in maturation of 18S rRNA [Pichia stipitis
           CBS 6054]
          Length = 399

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 10/126 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK     LT+ + ++N  V  MH ++K  ER  I+ D R
Sbjct: 258 DLYDNLTIT-----QAVIFCNTKLKVNWLTDQMRKQNFTVVSMHGDMKQDERDSIMNDFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VL+  ++   G+D+ +  LV   D         K + I  IGR+ R     V + 
Sbjct: 313 TGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTDKENYIHRIGRSGRFGRKGVAIN 367

Query: 690 ADTITK 695
             T   
Sbjct: 368 LITKED 373


>gi|124026185|ref|YP_001015301.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           NATL1A]
 gi|123961253|gb|ABM76036.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           NATL1A]
          Length = 589

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 98/263 (37%), Gaps = 42/263 (15%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQ----VEDVYDEIN 576
             ++ SAT  S      +  +    E  I+ T L +  +  R    Q    V  +   + 
Sbjct: 212 QLVLFSATMPSEIRRLSKKYLNSPAEITIKATELKERLIRQRYISVQNVYKVNALQRVLE 271

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +++G  +++   TK +   + E L      V  ++ ++   +R   +  LR G  ++L
Sbjct: 272 AVSEEG--VIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVERLRQGSINIL 329

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLD+   GLV   D   +     + + +  IGR  R   +   +        
Sbjct: 330 VATDVAARGLDVDRIGLVINYDMPFD-----REAYVHRIGRTGRAGRNGEAILFVNP--- 381

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKI--MEVIDPILLEDAATTNISIDAQQLS 754
                      RE+    N +     ++V + I  M++ D  L+ +     +     + +
Sbjct: 382 -----------RERSFLSNLE-----RAVGQPIEKMDIPDNDLINNNRIKKLQAKLIKAA 425

Query: 755 LSKKK-------GKAHLKSLRKQ 770
            +++         +  +K++ K+
Sbjct: 426 STERDNPEEANILEELIKNVEKE 448


>gi|104773512|ref|YP_618492.1| DEAD-box ATP dependent DNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116513507|ref|YP_812413.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103422593|emb|CAI97196.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116092822|gb|ABJ57975.1| Superfamily II DNA and RNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325125143|gb|ADY84473.1| ATP-dependent RNA helicase-like protein [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 483

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 77/194 (39%), Gaps = 13/194 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI--IRPTGLVDPPVE---IRSARTQVEDVYDEI 575
           R  T++ SAT P   +    + +   Q+  I+   L    ++   +R    +  D    +
Sbjct: 176 RDQTLLFSATMPKPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRL 235

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L  ++   TKR  ++LT  L  R      +H ++    R+++++  + G+ D+
Sbjct: 236 IDVENPDL-AVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDI 294

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   S   + +     
Sbjct: 295 LVATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNE 349

Query: 695 KSIQLAIDETTRRR 708
                 I++ T+++
Sbjct: 350 IGYMRTIEDLTKKK 363


>gi|325093268|gb|EGC46578.1| GPI inositol-deacylase [Ajellomyces capsulatus H88]
          Length = 1690

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 51/138 (36%), Gaps = 6/138 (4%)

Query: 568 VEDVYDEIN-LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           V D+        A +    L+  +       LTE      +  RY+ S+     R + + 
Sbjct: 279 VNDITVRAWLSRASERKSTLVFGVNIEHVRCLTEAFRRFGVDARYITSQTPKDIRTDELE 338

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R  ++ VLV   L  EG DIP    V +    +     SK  LIQ IGR  R    K 
Sbjct: 339 AFRNQEYPVLVNCGLFTEGTDIPNIDCVLLARPTR-----SKNLLIQMIGRGLRLYPGKK 393

Query: 687 ILYADTITKSIQLAIDET 704
             +   +  S+   I  T
Sbjct: 394 NCHIIDMVASLGTGITST 411


>gi|320580417|gb|EFW94640.1| Putative ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 499

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 78/185 (42%), Gaps = 19/185 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT----------GLVDPPVEI---RSARTQVED 570
            T++ +AT    E+ +     +++ ++ T            +   VE+   R    ++  
Sbjct: 265 QTLMFTAT-WPKEVRELAMNFMDKPVKVTIGQRDELSANKRIQQIVEVVDPREKEQKLLQ 323

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  +    +++  ++L+  L K+ A  + + L  +   V  +H ++   +R + ++D + 
Sbjct: 324 LLRKYQSGSKKDDKLLIFALYKKEAARVEKTLTYKGFSVAALHGDLNQAQRTQALQDFKA 383

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           GK ++L+  ++   GLDIP   +V  L      F  +    +  IGR  R   + +    
Sbjct: 384 GKHNILLATDVAARGLDIPNVKVVINL-----TFPLTVEDYVHRIGRTGRAGQTGISHTL 438

Query: 691 DTITK 695
            T  +
Sbjct: 439 FTEHE 443


>gi|303313235|ref|XP_003066629.1| ATP-dependent RNA helicase ded1, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240106291|gb|EER24484.1| ATP-dependent RNA helicase ded1, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 593

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V  K+ A+ L ++L+   +    +HS+    ER + IR  R G   ++V   +  
Sbjct: 397 RTLVFVNNKQQADLLDDFLFNNGLPSTSIHSDRTQREREDAIRAFRTGVCPIMVATGISA 456

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            GLDI     V   D             I  IGR AR  N  +        +   +A D
Sbjct: 457 RGLDIRHVMHVINFDLPSVEHG-GIDEYIHRIGRTARIGNEGLATSFYNDGRDSAIATD 514


>gi|240275905|gb|EER39418.1| DEAD/DEAH box helicase [Ajellomyces capsulatus H143]
          Length = 653

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 51/138 (36%), Gaps = 6/138 (4%)

Query: 568 VEDVYDEIN-LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           V D+        A +    L+  +       LTE      +  RY+ S+     R + + 
Sbjct: 279 VNDITVRAWLSRASERKSTLVFGVNIEHVRCLTEAFRRFGVDARYITSQTPKDIRTDELE 338

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R  ++ VLV   L  EG DIP    V +    +     SK  LIQ IGR  R    K 
Sbjct: 339 AFRNQEYPVLVNCGLFTEGTDIPNIDCVLLARPTR-----SKNLLIQMIGRGLRLYPGKK 393

Query: 687 ILYADTITKSIQLAIDET 704
             +   +  S+   I  T
Sbjct: 394 NCHIIDMVASLGTGITST 411


>gi|296130315|ref|YP_003637565.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296022130|gb|ADG75366.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 598

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   I  A  +GL  ++   TKR A  + + L ER      +H ++    R + +R  R
Sbjct: 288 ELLARILQARGRGL-TIVFARTKRTAAKVADELVERGFAAGAIHGDLGQGAREQALRAFR 346

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            GK DVLV  ++   G+D+ +   V             + + +   GR  R  N    + 
Sbjct: 347 HGKVDVLVATDVAARGIDVEDVTHVVNY-----QCPEDEKTYLHRTGRTGRAGNKGTAVT 401

Query: 689 YADTITKSIQLAID 702
           + D         ID
Sbjct: 402 FVDWDDIPRWGLID 415


>gi|294661382|ref|YP_003573258.1| hypothetical protein Aasi_1916 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336533|gb|ACP21130.1| hypothetical protein Aasi_1916 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 575

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 22/209 (10%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI---------IRPTGLVDPPVEIRSARTQVEDVY 572
            T++ SAT  P   +L        E+I         I    L    +EI+    +  ++ 
Sbjct: 177 QTLMFSATFPPKVEKLAAKYMQSPERIFMNEFDSMAIVAQNLTQEILEIKE-ENKYFELL 235

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            ++N        IL+ V TK  AE L+  L +       +H  ++  +R  ++R  R G+
Sbjct: 236 TQLNSREGT---ILVFVKTKDNAEHLSLRLNKEAYNTCAIHGNLRQTKRERVMRAFRQGR 292

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             ++V  ++   GLD+P    V   D        +    +  IGR AR       L   +
Sbjct: 293 HQIMVATDIAARGLDVPHVKHVINYD-----IPHAPEDYVHRIGRTARAGAKGFALSFVS 347

Query: 693 ITKSIQ-LAIDETTRRREKQLEHN-KKHN 719
                +  AI +    ++ + + N ++H 
Sbjct: 348 SQDRKRWNAIQDLLNPKQAKSDRNSEQHG 376


>gi|154281885|ref|XP_001541755.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150411934|gb|EDN07322.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1669

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 51/138 (36%), Gaps = 6/138 (4%)

Query: 568 VEDVYDEIN-LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           V D+        A +    L+  +       LTE      +  RY+ S+     R + + 
Sbjct: 274 VNDITVRAWLSRASERKSTLVFGVNIEHVRCLTEAFRRFGVDARYITSQTPKDIRTDELE 333

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R  ++ VLV   L  EG DIP    V +    +     SK  LIQ IGR  R    K 
Sbjct: 334 AFRNQEYPVLVNCGLFTEGTDIPNIDCVLLARPTR-----SKNLLIQMIGRGLRLYPGKK 388

Query: 687 ILYADTITKSIQLAIDET 704
             +   +  S+   I  T
Sbjct: 389 NCHIIDMVASLGTGITST 406


>gi|221133986|ref|ZP_03560291.1| ATP-dependent RNA helicase [Glaciecola sp. HTCC2999]
          Length = 622

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 11/196 (5%)

Query: 523 PTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--EDVYDEINL-- 577
             T + SAT PG  +    + +   + ++    V     IR    QV      + +    
Sbjct: 182 KQTALFSATMPGPIKKITERYLHEPKHVKIASKVSTASTIRQRYCQVAGHHKLEALTRIL 241

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +Q   +++ V TK    +L + L  R   V  ++ ++    R   +  L+ G  D+L+
Sbjct: 242 EVEQFDGVIVFVRTKTATLELADKLSARGYDVEPLNGDIPQKSRERTVERLKSGSIDILI 301

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             +++  GLD+     V   D           S +  IGR  R       IL+     K 
Sbjct: 302 ATDVVARGLDVERVSHVINFD-----IPYDTESYVHRIGRTGRAGRQGDAILFISHREKR 356

Query: 697 IQLAIDETTRRREKQL 712
           +   I++TT++  +Q+
Sbjct: 357 LLFQIEKTTKQSIEQM 372


>gi|119191928|ref|XP_001246570.1| hypothetical protein CIMG_00341 [Coccidioides immitis RS]
          Length = 682

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V  K+ A+ L ++L+   +    +HS+    ER + IR  R G   ++V   +  
Sbjct: 486 RTLVFVNNKQQADLLDDFLFNNGLPSTSIHSDRTQREREDAIRAFRTGVCPIMVATGISA 545

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            GLDI     V   D             I  IGR AR  N  +        +   +A D
Sbjct: 546 RGLDIRHVMHVINFDLPSVEHG-GIDEYIHRIGRTARIGNEGLATSFYNDGRDSAIATD 603


>gi|329666845|gb|AEB92793.1| putative RNA helicase [Lactobacillus johnsonii DPC 6026]
          Length = 461

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 62/331 (18%), Positives = 126/331 (38%), Gaps = 41/331 (12%)

Query: 376 TIKIYANSHYVTPRPTLNTAM-KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
              +    + +     +  A+      EL  +L ++ ++ R      L   I Y     +
Sbjct: 58  HAYLIPILNMIDESAPVTQAIVTAPSRELANQLYKVARQLRDASG--LNISIEYLGGGND 115

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL-------LFVDESHVTIPQISGMY 487
                +  E+ +  L    PG     L ++  +  +         +DE+ +T+       
Sbjct: 116 RNRQIEKAESRAPQLIIATPGR----LHDFASKKFINLENVKAFIIDEADMTLDMGFLSQ 171

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
             +   K    +    L +     P++ E +         +S  P    ++         
Sbjct: 172 MDEIMSK---LDKKAVLGAFSATIPVKLENFLRK-----YMSK-PEFIVIDN------PA 216

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           II PT + +  +++ S     +       L   Q    L+   TK+  ++LT+YL E+ +
Sbjct: 217 IIAPT-IQNDLIDVGSRD---KKSILYKLLTMGQPYLALVFANTKKTVDELTDYLEEQGL 272

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H  +   ER  IIR +R G++  +V  +L   G+D+P   LV   +  K+     
Sbjct: 273 KVTKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPGVSLVVNYEIPKD----- 327

Query: 668 KTSLIQTIGRAARN---VNSKVILYADTITK 695
              +I  IGR  RN    ++  ++Y D +++
Sbjct: 328 LEFVIHRIGRTGRNGLEGHAITLIYDDEMSQ 358


>gi|315503693|ref|YP_004082580.1| dead/deah box helicase domain protein [Micromonospora sp. L5]
 gi|315410312|gb|ADU08429.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
          Length = 553

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 7/136 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   I  A  +GL  ++   TKR A+ + E L  R   V  +H ++    R   +R  R
Sbjct: 254 EIVARILQAEGRGL-TMIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            GK D LV  ++   G+D+     V   D         + +    IGR  R   + V + 
Sbjct: 313 AGKIDTLVATDVAARGIDVTGVTHVINYDC-----PEDQDTYTHRIGRTGRAGATGVAVT 367

Query: 689 YADTITKSIQLAIDET 704
           + D         ID+T
Sbjct: 368 FVDWDDMPRWRIIDKT 383


>gi|323526518|ref|YP_004228671.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323383520|gb|ADX55611.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 536

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 25/198 (12%)

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVD---PPVEIRSARTQVEDVYDEINLAAQQGL 583
           +V+ATP + +       +  +I   TG +      +EI     Q  ++   ++    +  
Sbjct: 238 IVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNIAQTVHYVDDRDH 297

Query: 584 R---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +                ++   TK  A+ L   L +       +H ++    R   IR L
Sbjct: 298 KDRLLDHLLRDAGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTIRAL 357

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R  +  VLV  ++   G+DIP    V   D  K          +  IGR  R   S + +
Sbjct: 358 RERRVRVLVATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGIAV 412

Query: 689 YADTITKSIQLAIDETTR 706
               +  + Q A+    R
Sbjct: 413 SL--VHHAEQGALKRIER 428


>gi|302870034|ref|YP_003838671.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302572893|gb|ADL49095.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 553

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 7/136 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   I  A  +GL  ++   TKR A+ + E L  R   V  +H ++    R   +R  R
Sbjct: 254 EIVARILQAEGRGL-TMIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            GK D LV  ++   G+D+     V   D         + +    IGR  R   + V + 
Sbjct: 313 AGKIDTLVATDVAARGIDVTGVTHVINYDC-----PEDQDTYTHRIGRTGRAGATGVAVT 367

Query: 689 YADTITKSIQLAIDET 704
           + D         ID+T
Sbjct: 368 FVDWDDMPRWRIIDKT 383


>gi|170100080|ref|XP_001881258.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164643937|gb|EDR08188.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 442

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 67/201 (33%), Gaps = 27/201 (13%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT                +E+     + +  + +    V+   ++         
Sbjct: 203 QVMLFSATFPMIVKDFKDKHMNSPYEINLMDELTLRGVTQYYAYVEERQKVH-------- 254

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   +    E L + + E      Y H+++    R  +  D R 
Sbjct: 255 CLNTLFSKLQINQSI-IFCNSTNRVELLAKKVTELGYSCFYSHAKMLQSHRNRVFHDFRN 313

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +  + +  
Sbjct: 314 GVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNSETYLHRIGRSGRFGHLGLAINL 368

Query: 691 DTITKSIQLAIDETTRRREKQ 711
            T      L   E     E Q
Sbjct: 369 VTYEDRFNLYKIEQELGTEIQ 389


>gi|308805024|ref|XP_003079824.1| putative RNA helicase (ISS) [Ostreococcus tauri]
 gi|116058281|emb|CAL53470.1| putative RNA helicase (ISS) [Ostreococcus tauri]
          Length = 425

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 27/208 (12%)

Query: 518 WNCLRPTTIVVSAT-PG------------SWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           +       ++ SAT P              + +   + + ++ I +    V+   ++   
Sbjct: 220 FMAKNRQILLYSATFPVTVKDFKDKYLRKPYVINLMEELTLKGITQYYAFVEERQKVH-- 277

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
                   + +    Q    I +   +    E L   + E      Y+H+++    R  +
Sbjct: 278 ------CLNTLFSKLQINQSI-IFCNSVTRVELLARKITELGYSCFYIHAKMIQAHRNRV 330

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
             D R G    LV  +L   G+DI    +V   D     F ++  + +  +GR+ R  + 
Sbjct: 331 FHDFRNGACRNLVSSDLFTRGIDIQSVNVVINFD-----FPKNSETYLHRVGRSGRFGHL 385

Query: 685 KVILYADTITKSIQLAIDETTRRREKQL 712
            + +   T    + L   E     E Q 
Sbjct: 386 GIAVNLITYDDRMNLFRIEQELGTEIQQ 413


>gi|67967669|dbj|BAE00317.1| unnamed protein product [Macaca fascicularis]
          Length = 480

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 266 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 325

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 326 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 372


>gi|16331758|ref|NP_442486.1| ATP-dependent RNA helicase DeaD [Synechocystis sp. PCC 6803]
 gi|1001719|dbj|BAA10556.1| ATP-dependent RNA helicase; DeaD [Synechocystis sp. PCC 6803]
          Length = 492

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
              ++ V TK+ A DLT  L E    V   H  +   +R  ++   R GK  ++V  ++ 
Sbjct: 246 ESAIIFVRTKQTAADLTSRLQEAGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVVATDIA 305

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAI 701
             GLD+     V   D        +  + I  IGR  R   + K I   + I + +  +I
Sbjct: 306 ARGLDVNNLSHVVNFD-----LPDNAETYIHRIGRTGRAGKTGKAIALVEPIDRRLLRSI 360

Query: 702 DETTRRREKQLE 713
           +    R ++Q+E
Sbjct: 361 EN---RLKQQIE 369


>gi|229845944|ref|ZP_04466056.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 7P49H1]
 gi|229810948|gb|EEP46665.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 7P49H1]
          Length = 415

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 88/249 (35%), Gaps = 28/249 (11%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +DE  V +         +  R   L   GF      D R L  +     
Sbjct: 145 IDYV-KQGVIGLDEIQVVV-------LDEADRMFDL---GFI----RDIRYLLRKCPTPQ 189

Query: 522 RPTTIVVSATPGSWELEQCQGIIVE------QIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
              T++ SAT      E     + +      +  + TG      E+     Q +      
Sbjct: 190 VRLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKE-ELFYPSNQDKMALLLT 248

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +  +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G  D+
Sbjct: 249 LMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDI 308

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GL I +   V   D         +   +  IGR  R   S V I +A    
Sbjct: 309 LVATDVAARGLHISDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFACEEY 363

Query: 695 KSIQLAIDE 703
                AI+E
Sbjct: 364 AMNLPAIEE 372


>gi|326791603|ref|YP_004309424.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326542367|gb|ADZ84226.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 477

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 91/250 (36%), Gaps = 22/250 (8%)

Query: 525 TIVVSATPGSWELEQCQ--------GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           T++ SAT      + C+          I   + +P  + +  +E      Q +    E  
Sbjct: 177 TLLFSATMAPHIQQLCEKYLRTPKTIHITTDLSKPNNIEEIGIE---THEQTKLAVLEAV 233

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +     ++    K   E + + L + N  V  +H +++  +R  ++ D R G+F  L
Sbjct: 234 TIVENPESCIIFCNRKERVEMVWKRLNDLNYGVGKIHGDMEQKQRFAVMEDFRKGRFRYL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DI     V   D           + +  +GR  R   S            
Sbjct: 294 VATDVAARGIDIDHITHVINFDV-----PEQAENYVHRMGRTGRAGRSGKTFIFIQPEDK 348

Query: 697 IQLAIDETTRRREKQL--EHNKKHNINPQSVKEKIMEVID-PILLEDAATTNISIDAQQL 753
             LA+ E+   R+  +   + ++  I   S K+   E +  P+  ++     ++ +  +L
Sbjct: 349 RNLAVIESYTMRKIPMRTAYREE-EI--ASAKKAFEEKMKQPLQFKETKGEVLNQEIMKL 405

Query: 754 SLSKKKGKAH 763
            ++  K    
Sbjct: 406 HINAGKKTKM 415


>gi|167581446|ref|ZP_02374320.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
          Length = 517

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I + Q I     +   V     R   + + D + 
Sbjct: 249 QTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLL 308

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                    ++   TK  A+ L   L +   +   +H ++    R   IR LR  +  VL
Sbjct: 309 RDTALDQ-AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVL 367

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 368 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 420

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 421 EQGALKRIER 430


>gi|71747184|ref|XP_822647.1| ATP-dependent DEAD-box RNA helicase [Trypanosoma brucei TREU927]
 gi|70832315|gb|EAN77819.1| ATP-dependent DEAD-box RNA helicase, putative [Trypanosoma brucei]
 gi|261332418|emb|CBH15413.1| ATP-dependent DEAD-box RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 406

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 79/232 (34%), Gaps = 31/232 (13%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D         YGF LP    +       ++   P T+   
Sbjct: 177 IIVLDEADKLLSQEFTSLMRDL--------YGF-LPKGRQSL-----LFSATFPVTVKDF 222

Query: 530 ATP---GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
           A       +E+   + + +  + +    V+   +I           + +    Q    I 
Sbjct: 223 ADKYLRNPYEINLMEELTLRGVTQYYAFVEERQKIH--------CLNTLFNRLQINQSI- 273

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +   +    E L + + +      Y+H+ ++   R  +  D R G    LV  +L+  G+
Sbjct: 274 IFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNLVCSDLITRGI 333

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           DI    +V   D  K        + +  IGR+ R  +  + +   T      
Sbjct: 334 DIQAVNVVINFDFPKY-----AETYLHRIGRSGRFGHLGLAINFVTYEDRHN 380


>gi|119356706|ref|YP_911350.1| transcription-repair coupling factor [Chlorobium phaeobacteroides
           DSM 266]
 gi|119354055|gb|ABL64926.1| transcription-repair coupling factor [Chlorobium phaeobacteroides
           DSM 266]
          Length = 1127

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 72/203 (35%), Gaps = 33/203 (16%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           + G+ GS  +     +      P +V++       +  ++     PH  V  F       
Sbjct: 76  VTGLKGSLSSVLACTLFSESDCPVLVVSGQTSF-EKYENDLGGLLPHAPVHTFSD----- 129

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIGSVESYS 291
                +P                      A  +L+++ + +++SS    +  + S     
Sbjct: 130 ----ELP---------------------LALVALVQKKNPLILSSFDDLLLPLSSPSEAL 164

Query: 292 QMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVS 351
           + +  L +      ++LLS L +  ++ ++     G F V G  +++F S    V  R+ 
Sbjct: 165 EKLFTLAVEKEAGYEKLLSFLAENGFEPREFVEDEGEFSVRGSIVDVF-SFGAKVPLRIE 223

Query: 352 MFGNDIEEISEFYPLTGQKIRNV 374
            FGN +  +  F   +    + +
Sbjct: 224 FFGNTVSSLRTFDINSQLSQKTL 246



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 63/175 (36%), Gaps = 7/175 (4%)

Query: 528 VSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
           +SATP    L+    G     I+        PVE          +   I    Q+  ++ 
Sbjct: 706 MSATPIPRTLQFSMLGARDLSIVSTPPKNRQPVETILTGYDPTIIQSAIRHELQRDGQVF 765

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYM--HSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
                    E++ + L +     R +  H ++ + E  +++ D    + DVL+  +++  
Sbjct: 766 FLHNRISGLEEVQQTLRDLVPYARIVIAHGQMPSKELEKVMMDFMQKEIDVLISTSIISS 825

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           GLDI     + I  AD  G     + L Q  GR  R+              +++ 
Sbjct: 826 GLDISNANTIIINRADMFGL----SDLYQLRGRVGRSERKASCYMITPPLNTLKK 876


>gi|325928505|ref|ZP_08189695.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
 gi|325541118|gb|EGD12670.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
          Length = 537

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     K +  +I+ 
Sbjct: 311 GLDVERISHVLNYD-----IPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIER 365

Query: 704 TTRR 707
            TR+
Sbjct: 366 ATRQ 369


>gi|300812076|ref|ZP_07092524.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496915|gb|EFK31989.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 481

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 77/194 (39%), Gaps = 13/194 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI--IRPTGLVDPPVE---IRSARTQVEDVYDEI 575
           R  T++ SAT P   +    + +   Q+  I+   L    ++   +R    +  D    +
Sbjct: 176 RDQTLLFSATMPKPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRL 235

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L  ++   TKR  ++LT  L  R      +H ++    R+++++  + G+ D+
Sbjct: 236 IDVENPDL-AVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDI 294

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   S   + +     
Sbjct: 295 LVATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNE 349

Query: 695 KSIQLAIDETTRRR 708
                 I++ T+++
Sbjct: 350 IGYMRTIEDLTKKK 363


>gi|17537549|ref|NP_496973.1| hypothetical protein Y54G11A.3 [Caenorhabditis elegans]
 gi|4008449|emb|CAA22456.1| C. elegans protein Y54G11A.3, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 504

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 5/116 (4%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++ + +  A  Q  ++++ V +K MA+ L+     + I  + +H      +R   +  LR
Sbjct: 326 EIVNFLTAAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLR 385

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            G+  +LV  +L   G+D+P+   V   D     F       +  +GR  R     
Sbjct: 386 SGEVQILVATDLASRGIDVPDITHVLNYD-----FPMDIEEYVHRVGRTGRAGRKG 436


>gi|326534262|dbj|BAJ89481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 6/117 (5%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             G + ++   TKR A+ L  Y   R+   + +H ++   +R   +   R G+F++LV  
Sbjct: 329 ADGGKCIVFTQTKREADRLA-YAMGRSYACQALHGDISQNQRERTLSGFRDGRFNILVAT 387

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           ++   GLDIP   LV            S    +   GR AR     + +   T  +S
Sbjct: 388 DVAARGLDIPNVDLVV-----HYEIPNSSELFVHRSGRTARAGKKGIAILMYTYEQS 439


>gi|320036459|gb|EFW18398.1| DEAD/DEAH box RNA helicase [Coccidioides posadasii str. Silveira]
          Length = 595

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V  K+ A+ L ++L+   +    +HS+    ER + IR  R G   ++V   +  
Sbjct: 399 RTLVFVNNKQQADLLDDFLFNNGLPSTSIHSDRTQREREDAIRAFRTGVCPIMVATGISA 458

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            GLDI     V   D             I  IGR AR  N  +        +   +A D
Sbjct: 459 RGLDIRHVMHVINFDLPSVEHG-GIDEYIHRIGRTARIGNEGLATSFYNDGRDSAIATD 516


>gi|302783853|ref|XP_002973699.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
 gi|302787961|ref|XP_002975750.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
 gi|300156751|gb|EFJ23379.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
 gi|300158737|gb|EFJ25359.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
          Length = 445

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  E+  +  +G ++++   TKR   ++ + +  R++    +H ++   +R   +   R 
Sbjct: 242 LLKELVNSYGKGGKVIVFAKTKRDTHNVAQAMS-RSVPCEALHGDIPQFQRERTLSGFRD 300

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+F VLV  ++   GLDIP   LV   +   +       + +   GR  R     V +  
Sbjct: 301 GRFSVLVATDVAARGLDIPNVDLVIHYEVPGDS-----ETFVHRSGRTGRAGKKGVAILM 355

Query: 691 DT 692
            T
Sbjct: 356 HT 357


>gi|255079330|ref|XP_002503245.1| predicted protein [Micromonas sp. RCC299]
 gi|226518511|gb|ACO64503.1| predicted protein [Micromonas sp. RCC299]
          Length = 605

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 104/268 (38%), Gaps = 36/268 (13%)

Query: 521 LRPTTIVVSAT--PGSWEL-----EQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDVY 572
            R  T++ SAT   G  EL     +    +  +QI    G +   V  +R     +++ +
Sbjct: 327 KRRQTMLFSATLTSGVEELAEFSMKNPARLSADQIGTTPGTLTEEVLRLRPGAAAMKEAH 386

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               +A     R ++   TK+ A  L   +    ++   +H ++   +R+  + + R G+
Sbjct: 387 LLAIVARTFTKRCIIFSRTKQQAHRLKIIMGIHGLKACELHGDLTQTQRLAALEEFRTGE 446

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
              +V  ++   GLDI     V   DA +     +  S +  +GR AR       L    
Sbjct: 447 ATHMVATDVAARGLDIAGVDAVVSYDAPR-----TLASYLHRVGRTARAGRKGTALTF-- 499

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
           + +S +  I   ++R  K +  +      P  V E     I+ +            +A +
Sbjct: 500 MEESDRKLIKAVSKRGSKLVARSL-----PTHVVEDFHAKIEGM-----------GEAIK 543

Query: 753 LSLSKKKGKAHLKSLRKQMHLA--ADNL 778
               +++ + HL   R +M  A  A+NL
Sbjct: 544 EVEMEERAEKHLA--RAEM-EAIKAENL 568


>gi|188036020|pdb|2JGN|A Chain A, Ddx3 Helicase Domain
 gi|188036021|pdb|2JGN|B Chain B, Ddx3 Helicase Domain
 gi|188036022|pdb|2JGN|C Chain C, Ddx3 Helicase Domain
          Length = 185

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 38  DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 97

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 98  PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 144


>gi|148826462|ref|YP_001291215.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae PittEE]
 gi|189040030|sp|A5UDI1|RHLB_HAEIE RecName: Full=ATP-dependent RNA helicase rhlB
 gi|148716622|gb|ABQ98832.1| ATP-dependent RNA helicase [Haemophilus influenzae PittEE]
          Length = 415

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 88/249 (35%), Gaps = 28/249 (11%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +DE  V +         +  R   L   GF      D R L  +     
Sbjct: 145 IDYV-KQGVIGLDEIQVVV-------LDEADRMFDL---GFI----RDIRYLLRKCPTPQ 189

Query: 522 RPTTIVVSATPGSWELEQCQGIIVE------QIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
              T++ SAT      E     + +      +  + TG      E+     Q +      
Sbjct: 190 VRLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKE-ELFYPSNQDKMALLLT 248

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +  +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G  D+
Sbjct: 249 LMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDI 308

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GL I +   V   D         +   +  IGR  R   S V I +A    
Sbjct: 309 LVATDVAARGLHISDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFACEEY 363

Query: 695 KSIQLAIDE 703
                AI+E
Sbjct: 364 AMNLPAIEE 372


>gi|28572737|ref|NP_789517.1| transcription-repair coupling factor [Tropheryma whipplei TW08/27]
 gi|28410870|emb|CAD67255.1| transcription-repair coupling factor [Tropheryma whipplei TW08/27]
          Length = 1248

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 59/181 (32%), Gaps = 35/181 (19%)

Query: 225 FVSYYDYYQPEAYV---PRTDTYIEKESSINEQIDRMRHSATRSLL-------------- 267
           F      Y PE+ +   P  DT + ++ S + +    R  A   +               
Sbjct: 50  FTDTLRTYLPESIILNFPEWDTLLHEQISPSPERVSARMEALHKISLFRKNNKRAKNAQT 109

Query: 268 ----------------ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
                                +VV+S+        +   +   +    G   E  E+ + 
Sbjct: 110 SKTLHDIGILEDNLPTIHQKLVVVASIKAFMQ-PIISDGNPPCLYFHTGGEYELSEIANI 168

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV   Y R D+   RG F + G  ++I+P   E    R+  FG  +E +  F     + I
Sbjct: 169 LVAMSYSRTDLVGARGEFAIRGGILDIYPP-TEKHPIRIEFFGRQLESMRHFRVSDQRSI 227

Query: 372 R 372
            
Sbjct: 228 G 228



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 23/199 (11%)

Query: 525  TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQV-----EDVYDEINLA 578
             + +SATP    LE     I E        +  P E R    T V     + V   +   
Sbjct: 851  ILAMSATPIPRTLEMSLMGIKE-----ISTLSTPPENRMPILTHVGPYRDKQVIAAVRRE 905

Query: 579  AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER--IEIIRDLRLGKFDVL 636
              +G ++            + + L +     R + +  K  ER   + + D   GK+D+L
Sbjct: 906  IIRGGQVFYIHNDTATISRVAQRLEQLIPEARVVSAHAKLAERMLEKTVIDFWEGKYDIL 965

Query: 637  VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            V   ++  GLD      + I  A+  G  +    L Q  GR  R           T    
Sbjct: 966  VCTTIIETGLDNANANTIIIDSAENYGLSQ----LHQLRGRVGRGTKRAYAYLFYT---- 1017

Query: 697  IQLAIDETTRRREKQLEHN 715
                + +T  +R + +  N
Sbjct: 1018 --STLKDTAYKRLEAIARN 1034


>gi|52424550|ref|YP_087687.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306602|gb|AAU37102.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 613

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 83/235 (35%), Gaps = 55/235 (23%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV-DPPVEIRSARTQVEDVYDEINLAAQQ 581
             T + SAT            + E I R T      P E++   TQ  +     +    +
Sbjct: 181 HQTALFSAT------------MPEPIRRITKRFMTDPQEVKIQSTQRTNPDIAQSCWYVR 228

Query: 582 GLR----------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           G R                 ++   TK    D+TE L +   R   ++ ++    R + +
Sbjct: 229 GYRKNEALLRFLEVEDFDGAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTL 288

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             LR G  D+LV  ++   GLD+    LV   D           S +  IGR  R   S 
Sbjct: 289 DRLRNGSLDILVATDVAARGLDVERISLVVNYD-----IPLDAESYVHRIGRTGRAGRSG 343

Query: 686 -VILYADT--------ITKSIQLAIDETT---------RRREK---QLEHNKKHN 719
             IL+ +         I + ++  I+E           RRREK   ++    +H+
Sbjct: 344 SAILFVEPRERRLLSNIERLMKKPIEEVDVPNHEALQARRREKFKAKITKQLEHH 398


>gi|83950175|ref|ZP_00958908.1| putative ATP-dependent RNA helicase protein [Roseovarius
           nubinhibens ISM]
 gi|83838074|gb|EAP77370.1| putative ATP-dependent RNA helicase protein [Roseovarius
           nubinhibens ISM]
          Length = 431

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 63/186 (33%), Gaps = 11/186 (5%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQI-IRPTGLVDPPVE--IRSARTQVEDVYDEINLA 578
            T++ SAT P    EL +       ++ + P G     +   +       +       L+
Sbjct: 182 QTMLFSATMPKQMEELSRAYLENPRKVQVSPPGKAADKITQSVHFLEKPAKPSKLREILS 241

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                  L+   TK  AE L + L         +H      +R   I+  R G+ +VLV 
Sbjct: 242 RDMDALTLVFSRTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEINVLVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   G+DIP    V   D           + +  IGR AR       I +  +    +
Sbjct: 302 TDVAARGIDIPGVAYVINYD-----LPDVPDNYVHRIGRTARAGREGEAIAFCSSEEADL 356

Query: 698 QLAIDE 703
              I  
Sbjct: 357 LRQIQR 362


>gi|325915753|ref|ZP_08178055.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538017|gb|EGD09711.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 461

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 29/226 (12%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC---------MDNRPLRF-EEWNCL 521
            +D        +SG+          + + GF LPS           D + L F   +   
Sbjct: 136 LIDHIERRSVDLSGIEVLILDEADRMLDMGF-LPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLAA 579
                          LE  +  +  Q+  P+  V   +   +       +       LA 
Sbjct: 195 IKQLA----------LEFMRNPMQIQVT-PSNTVAESITHRVHPVDGARKRDLLLHLLAQ 243

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               + L+   TK  ++ L  +L +  I+   +H      +R+  + D + G+  VLV  
Sbjct: 244 DSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVAT 303

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           ++   G+DI +   V   D             +  IGR  RN ++ 
Sbjct: 304 DIAARGIDIDQLPKVINYDLPMV-----AEDYVHRIGRTGRNGSTG 344


>gi|288800406|ref|ZP_06405864.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332619|gb|EFC71099.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 641

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 66/186 (35%), Gaps = 7/186 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TKR  +++ + L         +H ++   +R   ++  R      LV  ++   
Sbjct: 245 AIIFCRTKRETQEIADKLIHDGYNAEALHGDLSQQQRDLTMQKFRKHTTQFLVATDVAAR 304

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           GLD+ +   V        G      S     GR  R       I    T  +S   AI++
Sbjct: 305 GLDVDDLTHVINF-----GLPDDIESYTHRSGRTGRAGKKGTSISIMHTRERSKMHAIEK 359

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS-IDAQQLSLSKKKGKA 762
              +   + E      I  + + + + +++   + E+     +S I+     + K+    
Sbjct: 360 VISKAFVEGEIPDAKAICSKQLYKVMDQILKADVNEEEIAPFLSEINRHFEYVDKEDIIK 419

Query: 763 HLKSLR 768
            + S+ 
Sbjct: 420 KIVSME 425


>gi|282866591|ref|ZP_06275633.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282558493|gb|EFB64053.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 537

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 73/191 (38%), Gaps = 16/191 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--------DVY 572
           +  T++ SAT PG+      + +     I  T   D    +++    V         ++ 
Sbjct: 205 KRQTMLFSATMPGAVISLARRYMSQPTHINATSPDDEGTTVKNTTQFVYRAHSMDKPEMV 264

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +GL  ++   TKR A D+ E L  R      +H ++    R + +R  R GK
Sbjct: 265 SRILQAESRGL-AMIFCRTKRTAADIAEQLERRGFASGAVHGDLGQGAREQALRAFRNGK 323

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            DVLV  ++   G+D+     V    + +E     + + +  IGR  R       I   D
Sbjct: 324 VDVLVCTDVAARGIDVEGVTHVINYQSPEE-----EKTYLHRIGRTGRAGAKGTAITLVD 378

Query: 692 TITKSIQLAID 702
                    I+
Sbjct: 379 WDDIPRWQLIN 389


>gi|257081095|ref|ZP_05575456.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
 gi|256989125|gb|EEU76427.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
          Length = 513

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 13/192 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +        E + I+   +    ++   +RS   +  D+   +  
Sbjct: 176 QTLLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L   L  R  +   +H ++   +R+ ++R  + G  D+LV
Sbjct: 236 -VQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R       + +       
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMG 349

Query: 697 IQLAIDETTRRR 708
               I+  T++R
Sbjct: 350 YLHVIENLTKKR 361


>gi|255971301|ref|ZP_05421887.1| helicase [Enterococcus faecalis T1]
 gi|256617719|ref|ZP_05474565.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256761605|ref|ZP_05502185.1| helicase [Enterococcus faecalis T3]
 gi|256854305|ref|ZP_05559669.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256957293|ref|ZP_05561464.1| helicase [Enterococcus faecalis DS5]
 gi|256959973|ref|ZP_05564144.1| helicase [Enterococcus faecalis Merz96]
 gi|256964332|ref|ZP_05568503.1| helicase [Enterococcus faecalis HIP11704]
 gi|257077733|ref|ZP_05572094.1| helicase [Enterococcus faecalis JH1]
 gi|257083763|ref|ZP_05578124.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|257086188|ref|ZP_05580549.1| helicase [Enterococcus faecalis D6]
 gi|257089260|ref|ZP_05583621.1| helicase [Enterococcus faecalis CH188]
 gi|257415413|ref|ZP_05592407.1| helicase [Enterococcus faecalis AR01/DG]
 gi|257418444|ref|ZP_05595438.1| helicase [Enterococcus faecalis T11]
 gi|257421095|ref|ZP_05598085.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294781261|ref|ZP_06746607.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300859873|ref|ZP_07105961.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
           TUSoD Ef11]
 gi|255962319|gb|EET94795.1| helicase [Enterococcus faecalis T1]
 gi|256597246|gb|EEU16422.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256682856|gb|EEU22551.1| helicase [Enterococcus faecalis T3]
 gi|256709865|gb|EEU24909.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256947789|gb|EEU64421.1| helicase [Enterococcus faecalis DS5]
 gi|256950469|gb|EEU67101.1| helicase [Enterococcus faecalis Merz96]
 gi|256954828|gb|EEU71460.1| helicase [Enterococcus faecalis HIP11704]
 gi|256985763|gb|EEU73065.1| helicase [Enterococcus faecalis JH1]
 gi|256991793|gb|EEU79095.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|256994218|gb|EEU81520.1| helicase [Enterococcus faecalis D6]
 gi|256998072|gb|EEU84592.1| helicase [Enterococcus faecalis CH188]
 gi|257157241|gb|EEU87201.1| helicase [Enterococcus faecalis ARO1/DG]
 gi|257160272|gb|EEU90232.1| helicase [Enterococcus faecalis T11]
 gi|257162919|gb|EEU92879.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294451597|gb|EFG20053.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300850691|gb|EFK78440.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
           TUSoD Ef11]
 gi|323480025|gb|ADX79464.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62]
          Length = 515

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 13/192 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +        E + I+   +    ++   +RS   +  D+   +  
Sbjct: 176 QTLLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L   L  R  +   +H ++   +R+ ++R  + G  D+LV
Sbjct: 236 -VQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R       + +       
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMG 349

Query: 697 IQLAIDETTRRR 708
               I+  T++R
Sbjct: 350 YLHVIENLTKKR 361


>gi|217977138|ref|YP_002361285.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
 gi|217502514|gb|ACK49923.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
          Length = 494

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 62/196 (31%), Gaps = 16/196 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T+  SAT    E+ +     +    R          T +    +       + E +   
Sbjct: 179 QTLFFSAT-MPPEITRLTETFLHNPARVEVARASSTATTITQGLIASAPGPAKRETLRRL 237

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +  AA      ++    KR    L + L         +H ++    R+  +   + G+  
Sbjct: 238 LRSAADFK-NAIIFCNRKRDVALLHKSLLTHGFNAGALHGDLDQRARMASLDAFKTGEVA 296

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           ++V  ++   GLDIP+   V   D             +  IGR  R   S V +   T  
Sbjct: 297 LIVCSDVAARGLDIPDVSHVLNFDV-----PTHAEDYVHRIGRTGRAGKSGVAITIVTKA 351

Query: 695 KSIQLAIDETTRRREK 710
               +A  E    R  
Sbjct: 352 DQKHIAEIEKLIGRSI 367


>gi|220927762|ref|YP_002504671.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
 gi|219998090|gb|ACL74691.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
           H10]
          Length = 542

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 4/125 (3%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++   TK   + +  +L ++    R +H ++   +R+  I+  + GKF +LV 
Sbjct: 238 VEKPESCMIFCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILVA 297

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   G+ I +  LV   D   +    +    I   GRA     +  ++  D I     
Sbjct: 298 TDVAARGIHIEDLSLVINYDVPNDK--DNYVHRIGRTGRAGHEGRAFSLVTGDDII--SL 353

Query: 699 LAIDE 703
             I+E
Sbjct: 354 YEIEE 358


>gi|169600899|ref|XP_001793872.1| hypothetical protein SNOG_03302 [Phaeosphaeria nodorum SN15]
 gi|118575175|sp|Q0UY62|DBP3_PHANO RecName: Full=ATP-dependent RNA helicase DBP3
 gi|111068913|gb|EAT90033.1| hypothetical protein SNOG_03302 [Phaeosphaeria nodorum SN15]
          Length = 592

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 72/189 (38%), Gaps = 19/189 (10%)

Query: 521 LRPTTIVVSAT--PGSWELEQCQGIIVEQI---------IRPTGLVDPPVEI---RSART 566
            +  T++ +AT  P   +L     +   +I         +R    +   VE+    +   
Sbjct: 353 KKRQTLMFTATWPPSVRDLASTFMVSPVRITIGDNQSGELRANVRIKQLVEVLDPHAKEQ 412

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           ++  +  +      +  RIL+  L K+ A  +  ++  +  RV  +H ++   +R   + 
Sbjct: 413 RLLQLLKQYQSGKNKDDRILVFCLYKKEAMRIENFIRMKGFRVGGIHGDLSQEKRSASLA 472

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             + G+  +LV  ++   GLDIP   LV  +      F  +    +  IGR  R     +
Sbjct: 473 AFKEGQVPLLVATDVAARGLDIPAVKLVINV-----TFPLTAEDYVHRIGRTGRAGKEGL 527

Query: 687 ILYADTITK 695
            +   T   
Sbjct: 528 AITFFTEHD 536


>gi|3776013|emb|CAA09209.1| RNA helicase [Arabidopsis thaliana]
          Length = 187

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 6/142 (4%)

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           + +Q  +   ++      G RIL+ + TK+  + +T  L         +H +    ER  
Sbjct: 12  SESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDW 71

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           ++ + R GK  ++   ++   GLD+ +   V   D     F  S    +  IGR  R   
Sbjct: 72  VLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYD-----FPGSLEDYVHRIGRTGRAGA 126

Query: 684 SKVILYADTITKSIQLAIDETT 705
                   T+  + + A + T 
Sbjct: 127 KGTAYTFFTVANA-RFAKELTN 147


>gi|325118686|emb|CBZ54237.1| VASA RNA helicase, related [Neospora caninum Liverpool]
          Length = 769

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 14/176 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIR---SARTQVEDVYDEIN 576
            T++ SAT    E++      +E  I       G  +  +  R   +   Q   +  ++ 
Sbjct: 479 QTVMFSAT-FPREIQMLAKDFLEDYIYLAVGRVGSTNEFIRQRLQYADEDQKLKLLVKLL 537

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              ++GL  ++ V TKR A+ + +YL + +     +H +    ER E +R  +  K  +L
Sbjct: 538 RETEKGL-TIIFVETKRKADMIEDYLVDDDFPAISIHGDRTQQEREEALRLFKAAKCPIL 596

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           V  ++   GLDI     V   D        +    +  IGR  R  N  +      
Sbjct: 597 VATDVAARGLDISNVTHVINFD-----LPTNIDDYVHRIGRTGRAGNLGLATSFVN 647


>gi|167911540|ref|ZP_02498631.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 112]
          Length = 337

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I + Q I     +   V     R   + + D + 
Sbjct: 112 QTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLL 171

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                    ++   TK  A+ L   L +   +   +H ++    R   IR LR  +  VL
Sbjct: 172 RDVALDQ-AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVL 230

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 231 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 283

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 284 EQGALKRIER 293


>gi|183222181|ref|YP_001840177.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912238|ref|YP_001963793.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776914|gb|ABZ95215.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167780603|gb|ABZ98901.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 471

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 13/189 (6%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL-VDPPVEIRSARTQVEDVYDE----I 575
            R   +  SAT    E+E+    I+ + IR     V   VE+ S      ++ D+    +
Sbjct: 183 KRRQNLFFSAT-MPPEIEKLANSILVEPIRIDVTPVSSTVELISQSVMYTELADKKNLLL 241

Query: 576 NLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +L   +  +  ++   TK  A  ++E L +  I+   +H       R   + D R GK  
Sbjct: 242 HLFKDKNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQRALEDFRSGKNR 301

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
            LV  +L   G+DI +   V   +           + +  IGR AR   + + I  A+  
Sbjct: 302 ALVATDLAARGIDIDDITHVINYE-----IPYVPETYVHRIGRTARAGKNGIAIAIAEAD 356

Query: 694 TKSIQLAID 702
            +S+   I+
Sbjct: 357 ERSLIKDIE 365


>gi|168042093|ref|XP_001773524.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675226|gb|EDQ61724.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 619

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 7/137 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++     +G + ++   TKR A+D+   +    +    +H ++  ++R + +   R 
Sbjct: 240 ILSDLITVHGKGGKTIVFTQTKRDADDVAMAMGNL-VSCGALHGDISQVQREKTLSAFRD 298

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           GK  VLV  ++   GLD+P   LV               + +   GR  R   S   IL 
Sbjct: 299 GKIAVLVATDVAARGLDVPNVDLVI-----HYEIPNDSETFVHRTGRTGRAGRSGTNILM 353

Query: 690 ADTITKSIQLAIDETTR 706
             +        I+   +
Sbjct: 354 FTSQQVRTMRTIENNVK 370


>gi|91775611|ref|YP_545367.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91709598|gb|ABE49526.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
          Length = 456

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 7/130 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++   TKR A+ L E LY    +   +H ++    R   +  LR G   VLV  ++ 
Sbjct: 245 NQAIVFTSTKRHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDVRVLVATDVA 304

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
             G+D+     V   D  K          +  IGR  R  N+ V L   +     QL   
Sbjct: 305 ARGIDVQGITHVINYDLPKF-----AEDYVHRIGRTGRAGNTGVALSFASHMDRHQLRKI 359

Query: 703 E--TTRRREK 710
           E  T +R E 
Sbjct: 360 EQYTGQRLEI 369


>gi|72382486|ref|YP_291841.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Prochlorococcus marinus str. NATL2A]
 gi|72002336|gb|AAZ58138.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str.
           NATL2A]
          Length = 589

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 98/263 (37%), Gaps = 42/263 (15%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQ----VEDVYDEIN 576
             ++ SAT  S      +  +    E  I+ T L +  +  R    Q    V  +   + 
Sbjct: 212 QLVLFSATMPSEIRRLSKKYLNSPAEITIKATELKERLIRQRYISVQNVYKVNALQRVLE 271

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +++G  +++   TK +   + E L      V  ++ ++   +R   +  LR G  ++L
Sbjct: 272 AVSEEG--VIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVERLRQGSINIL 329

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLD+   GLV   D   +     + + +  IGR  R   +   +        
Sbjct: 330 VATDVAARGLDVDRIGLVINYDMPFD-----REAYVHRIGRTGRAGRNGEAILFVNP--- 381

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKI--MEVIDPILLEDAATTNISIDAQQLS 754
                      RE+    N +     ++V + I  M++ D  L+ +     +     + +
Sbjct: 382 -----------RERSFLSNLE-----RAVGQPIEKMDIPDNDLINNNRIKKLQAKLIKAA 425

Query: 755 LSKKK-------GKAHLKSLRKQ 770
            +++         +  +K++ K+
Sbjct: 426 STERDNPEEANILEELIKNVEKE 448


>gi|83945168|ref|ZP_00957517.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83851338|gb|EAP89194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 466

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 90/256 (35%), Gaps = 32/256 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ E              ++             + + GF  P+    R L   
Sbjct: 149 TPGRLLDHLGE-----------RKARLDLTRFVILDEADQMLDLGFI-PAI---RKLLRM 193

Query: 517 EWNCLRPTTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
                   T++ SAT            L+  + + V    +P   +D  V    A  + +
Sbjct: 194 VGEER--QTLMFSATMAPAIRQLADDFLDHPETVAVTPPSKPVERIDQKVFYTEASAKPD 251

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + D +  A + G R ++   TK  A+ + + L +   +   +H +    +R   +   +
Sbjct: 252 ALIDLM--APEAGKRAIIFTRTKYGADRVAKRLVKYGHKANAIHGDKSQNQRTRALDAFK 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVIL 688
            G+  VLV  ++   G+D+    LV   +           + +  IGR AR   + + + 
Sbjct: 310 SGEAPVLVATDIAARGIDVDGVDLVVNYE-----LPNVAENYVHRIGRTARAGASGRAVA 364

Query: 689 YADTITKSIQLAIDET 704
                 + +   I++T
Sbjct: 365 LCAPDERVMLKDIEKT 380


>gi|309807414|ref|ZP_07701377.1| putative DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
           iners LactinV 01V1-a]
 gi|308169336|gb|EFO71391.1| putative DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
           iners LactinV 01V1-a]
          Length = 419

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 19/180 (10%)

Query: 529 SAT-PGSWE------LEQCQGIIVE--QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           SAT P   E      +E  + ++++   +I PT + +  +++ S   Q  D+   +    
Sbjct: 188 SATIPVKLEQFLNKYMEHPEFVVIDNPSVISPT-VANDLIDVGSKDKQ--DILYTLL-TM 243

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            Q     +   TK+  ++L  YL ++ ++V  +H  +   ER   IR +R G++  ++  
Sbjct: 244 GQPYLAFVFANTKKTVDELATYLDQKGLKVAKIHGGITERERKRTIRQVREGQYQYVIAS 303

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +L   G+DIP   LV   +            +I  IGR  RN N           + +Q 
Sbjct: 304 DLAARGIDIPGISLVINYE-----IPTDLEFVIHRIGRTGRN-NLYGHAITLIHEEEMQQ 357


>gi|255973920|ref|ZP_05424506.1| helicase [Enterococcus faecalis T2]
 gi|255966792|gb|EET97414.1| helicase [Enterococcus faecalis T2]
          Length = 515

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 13/192 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +        E + I+   +    ++   +RS   +  D+   +  
Sbjct: 176 QTLLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L   L  R  +   +H ++   +R+ ++R  + G  D+LV
Sbjct: 236 -VQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R       + +       
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMG 349

Query: 697 IQLAIDETTRRR 708
               I+  T++R
Sbjct: 350 YLHVIENLTKKR 361


>gi|146419877|ref|XP_001485898.1| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 397

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 68/176 (38%), Gaps = 21/176 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             +VVSAT     LE       + +        +   G+    ++      + +   D+Y
Sbjct: 199 QVVVVSATLTPEVLEMTNKFTSDPVKILVKRDDVTLKGIKQYYIQCEKEDWKFDTLCDLY 258

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TK     L   + + N  V  MH ++K  +R  I+++ R G 
Sbjct: 259 DNLTIT-----QAVIFCNTKAKVNWLAGQMRKSNFTVAAMHGDMKQEDRDSIMKEFRSGS 313

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             VL+  ++   G+D+ +  LV   D         K + +  IGR+ R       +
Sbjct: 314 TRVLISTDVWARGIDVQQVSLVINYD-----LPLDKENYVHRIGRSGRFGRKGTAI 364


>gi|116629091|ref|YP_814263.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238853834|ref|ZP_04644199.1| dead/deah box helicase domain protein [Lactobacillus gasseri 202-4]
 gi|116094673|gb|ABJ59825.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC
           33323]
 gi|238833529|gb|EEQ25801.1| dead/deah box helicase domain protein [Lactobacillus gasseri 202-4]
          Length = 464

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 9/135 (6%)

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           II PT + +  +++ S   + E +Y  + +   Q    L+   TK+  ++LT YL E+ +
Sbjct: 220 IIAPT-IQNDLIDVGSRDKK-EILYKLLTM--GQPYLALVFANTKKTVDELTNYLEEQGL 275

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H  +   ER  IIR +R G++  +V  +L   G+D+P   LV   +  K+     
Sbjct: 276 KVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPGVSLVVNYEIPKD----- 330

Query: 668 KTSLIQTIGRAARNV 682
              +I  IGR  RN 
Sbjct: 331 LEFVIHRIGRTGRNG 345


>gi|332669674|ref|YP_004452682.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332338712|gb|AEE45295.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
          Length = 590

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 63/184 (34%), Gaps = 19/184 (10%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
                   + A     +  Q    I + + R   L    VE          +   +  A 
Sbjct: 249 RYMTQPTHIRAADPDDDGSQTVKNIKQVVYRAHAL--DKVE----------LLARMLQAN 296

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +GL  ++   TKR A  + + L ER      +H ++    R + +R  R GK DVLV  
Sbjct: 297 GRGL-TIVFARTKRTAAKVADELVERGFAAGALHGDLGQGAREQALRAFRHGKVDVLVAT 355

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQ 698
           ++   G+D+ +   V             + + +   GR  R  N    + + D       
Sbjct: 356 DVAARGIDVEDVTHVVNY-----QCPEDEKTYLHRTGRTGRAGNKGTAVTFVDWDDMPRW 410

Query: 699 LAID 702
             ID
Sbjct: 411 SLID 414


>gi|188578674|ref|YP_001915603.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188523126|gb|ACD61071.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 460

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 29/226 (12%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC---------MDNRPLRF-EEWNCL 521
            +D        +SG+          + + GF LPS           D + L F   +   
Sbjct: 136 LIDHIERRSVDLSGIEVLILDEADRMLDMGF-LPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLAA 579
                          LE  +  +  Q+  P+  V   +   +       +       LA 
Sbjct: 195 IKQLA----------LEFMRNPMQIQVT-PSNTVAESITHRVHPVDGARKRDLLLHLLAQ 243

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               + L+   TK  ++ L  +L +  I+   +H      +R+  + D + G+  VLV  
Sbjct: 244 DSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVAT 303

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           ++   G+DI +   V   D             +  IGR  RN ++ 
Sbjct: 304 DIAARGIDIDQLPKVINYDLPMV-----AEDYVHRIGRTGRNGSTG 344


>gi|156103333|ref|XP_001617359.1| ATP-dependent RNA helicase [Plasmodium vivax SaI-1]
 gi|148806233|gb|EDL47632.1| ATP-dependent RNA helicase, putative [Plasmodium vivax]
          Length = 717

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 5/105 (4%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G +IL+   TKR  + L + L         +H + +  ER  I+ + R  + ++LV  +
Sbjct: 573 EGNKILIFCDTKRNCDSLCKELRYHQYNALAIHGDKEQRERDRILSNYRSDRCNILVATD 632

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +   GLDI    +V   D        +    I  IGR  R     
Sbjct: 633 VASRGLDIKNISVVVNYD-----LPNTIEDYIHRIGRTGRAGQKG 672


>gi|138893877|ref|YP_001124330.1| DEAD-box ATP dependent DNA helicase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265390|gb|ABO65585.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus
           thermodenitrificans NG80-2]
          Length = 467

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 11/196 (5%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L E L  R      +H ++   +R+ ++R  + G  ++LV 
Sbjct: 237 IQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI     V   D       +   S +  IGR  R   + V +   T  +  Q
Sbjct: 297 TDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQ 351

Query: 699 -LAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
              I+ TT+R+ ++++    N+      +   EK++ V +   L         +  +  S
Sbjct: 352 LHHIERTTKRKMERMKPPTLNEALEGQQRIAIEKLLNVAEAENLSFYKRAAEELLEEHDS 411

Query: 755 LSKKKGKAHLKSLRKQ 770
           ++     A LK L ++
Sbjct: 412 VTI--VAACLKMLTRE 425


>gi|84622357|ref|YP_449729.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84366297|dbj|BAE67455.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 460

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 29/226 (12%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC---------MDNRPLRF-EEWNCL 521
            +D        +SG+          + + GF LPS           D + L F   +   
Sbjct: 136 LIDHIERRSVDLSGIEVLILDEADRMLDMGF-LPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLAA 579
                          LE  +  +  Q+  P+  V   +   +       +       LA 
Sbjct: 195 IKQLA----------LEFMRNPMQIQVT-PSNTVAESITHRVHPVDGARKRDLLLHLLAQ 243

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               + L+   TK  ++ L  +L +  I+   +H      +R+  + D + G+  VLV  
Sbjct: 244 DSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVAT 303

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           ++   G+DI +   V   D             +  IGR  RN ++ 
Sbjct: 304 DIAARGIDIDQLPKVINYDLPMV-----AEDYVHRIGRTGRNGSTG 344


>gi|330836276|ref|YP_004410917.1| DEAD/DEAH box helicase domain-containing protein [Spirochaeta
           coccoides DSM 17374]
 gi|329748179|gb|AEC01535.1| DEAD/DEAH box helicase domain protein [Spirochaeta coccoides DSM
           17374]
          Length = 634

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 78/199 (39%), Gaps = 20/199 (10%)

Query: 523 PTTIVVSAT-PGSWELEQCQGIIVEQIIRP-----TGLVDPPV--EIRSARTQVEDVYDE 574
              +  SAT P   +    + +   +I+R      T L+   V  E+R +  ++E +   
Sbjct: 180 KRMLCFSATMPAPIQNLAQRFMKDPKIVRVVSQDMTNLLTNQVCYEVRESD-KLEALCRV 238

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I++A       L+   TK   +++TE L  R      +H ++   +R  I+   R  +  
Sbjct: 239 IDVAVD--FYGLVFCRTKLQCDEVTEKLVARGQDADALHGDLSQKQREAILNRFRRRQLS 296

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   G+DIP+   V           ++  + I  IGR  R   S   +   T  
Sbjct: 297 VLVATDVAARGIDIPDLTHVINYS-----IPQNPEAYIHRIGRTGRAGRSGTAVTFITPR 351

Query: 695 KSIQ----LAIDETTRRRE 709
           +  +      I  T   RE
Sbjct: 352 EYSKLKYIQRIAHTEIHRE 370


>gi|327541188|gb|EGF27732.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
           baltica WH47]
          Length = 556

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 78/225 (34%), Gaps = 24/225 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGL 554
            + + GF LP     R L+F          ++ SAT PG    +    I+V+ +      
Sbjct: 242 HMLDMGF-LPDVK--RILKFLP---RDRQNLLFSATMPGP-IRKLADEILVDPVTIQIAP 294

Query: 555 VDPPVEIRSART-----QVED--VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
             P VE R  ++     Q +   + +        G   L+   TK  A+ +   L +  +
Sbjct: 295 QKPTVE-RIEQSICFVAQADKPRLLNHFIETKATG-STLVFTRTKHGADAVARRLVKAGV 352

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +   +H       R+  +   +  + DVLV  ++   G+DI     V   D        +
Sbjct: 353 KAAAIHGNKTQANRVRTLNKFKNDELDVLVATDVAARGIDIDGIQTVINYDT-----PNT 407

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
             + +  IGR  R       +         +  I    R  + Q+
Sbjct: 408 PEAYVHRIGRTGRAGREGETVMFCG-GHETKFFIA-IEREIKLQI 450


>gi|239831816|ref|ZP_04680145.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
 gi|239824083|gb|EEQ95651.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
          Length = 484

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 63/190 (33%), Gaps = 16/190 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVED------VYD 573
            T+  SAT    E+ +     +    R            V  R  ++  +D      + D
Sbjct: 180 QTLFFSAT-MPPEITKLTEQFLHSPTRVEVAKASSTAKTVTQRLVKSTKKDWDKRAVLRD 238

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I          ++    K+   +L   L         +H ++    R+ ++ + + GK 
Sbjct: 239 LIRAEGDTLKNAIIFCNRKKDVSELFRSLTRHEFNAGALHGDMDQRARMTMLSNFKDGKL 298

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIP+   V   D             +  IGR  R   S       T 
Sbjct: 299 QLLVASDVAARGLDIPDVSHVFNFD-----IPIHSEDYVHRIGRTGRAGRSGKAFTIVTP 353

Query: 694 TKSIQLAIDE 703
           + +  LA  E
Sbjct: 354 SDTKYLAAIE 363


>gi|229844771|ref|ZP_04464910.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 6P18H1]
 gi|229812485|gb|EEP48175.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 6P18H1]
          Length = 415

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 90/252 (35%), Gaps = 34/252 (13%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +DE  V +         +  R   L   GF        R +R+    C 
Sbjct: 145 IDYV-KQGVIGLDEIQVVV-------LDEADRMFDL---GFI-------RDIRYLLRKCP 186

Query: 522 RPT---TIVVSATPGSWELEQCQGIIVE------QIIRPTGLVDPPVEIRSARTQVEDVY 572
            P    T++ SAT      E     + +      +  + TG      E+     Q +   
Sbjct: 187 APQARLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKE-ELFYPSNQDKMAL 245

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               +  +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G 
Sbjct: 246 LLTLMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGD 305

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
            D+LV  ++   GL I +   V   D         +   +  IGR  R   S V I +A 
Sbjct: 306 LDILVATDVAARGLHISDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFAC 360

Query: 692 TITKSIQLAIDE 703
                   AI+E
Sbjct: 361 EEYAMNLPAIEE 372


>gi|224124820|ref|XP_002319430.1| predicted protein [Populus trichocarpa]
 gi|222857806|gb|EEE95353.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 37/224 (16%)

Query: 522 RPTTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           +  T++ SAT P   E      L     + V ++  PT  V   +   S   +++ +   
Sbjct: 294 KHQTLLFSATMPVEIETLTQEYLTSPVQVRVGKVSSPTANVSQILTKVSESEKIDCLLAL 353

Query: 575 INLAAQQGLR-------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +   A Q  R        ++ V  K    ++ E L  + ++   +H      +R   +RD
Sbjct: 354 LVEDASQAERSNQPFPLTIVFVERKTRCNEVAEALVAQALQAVALHGGRSQSDREAALRD 413

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-- 685
            R G   +LV  ++   GLD+     V  LD  K     +    +  IGR  R  ++   
Sbjct: 414 FRSGSTSILVATDVASRGLDVTGVAHVINLDLPK-----TMEDYVHRIGRTGRAGSTGQA 468

Query: 686 VILYADT---ITKSIQLAIDE-------------TTRRREKQLE 713
              Y D    +   I+ AI +             T RR+E++  
Sbjct: 469 TSFYTDQDLFLVAQIKKAIADVESGNTVAFATGKTARRKEREAA 512


>gi|70943453|ref|XP_741771.1| ATP-dependent RNA helicase [Plasmodium chabaudi chabaudi]
 gi|56520361|emb|CAH82196.1| ATP-dependent RNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 557

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 78/239 (32%), Gaps = 34/239 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF------RLPSCMDN 510
            P  L +Y+ E+ ++           +             L + GF       +     N
Sbjct: 299 TPGRLLDYL-ENGII----------NLLRCIYVVIDEADRLLDMGFEKQLRKIMTQINKN 347

Query: 511 RPLRF--EEWNCLRPTTIV--VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
           + L F    W            S  P   ++ + +    + I            I S+  
Sbjct: 348 KQLLFLTATWPEQVRKLAYDFCSFDPVKIQIGKSELTANKNI--------EQQVIVSSSI 399

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            ++    +      +  +IL+   TKR  ++L + L         +H + +  ER  I+ 
Sbjct: 400 DLKKKLLDWLKDNYENNKILIFCDTKRNCDNLCKELRYHQYNSLSIHGDKQQRERDRILN 459

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           + +  + ++LV  ++   GLDI    +V   D        +    I  IGR  R  N  
Sbjct: 460 NYKNDRCNILVATDVASRGLDIKNISIVINYD-----IPNTIEDYIHRIGRTGRAGNKG 513


>gi|57113867|ref|NP_001008986.1| ATP-dependent RNA helicase DDX3Y [Pan troglodytes]
 gi|51315848|sp|Q6GVM6|DDX3Y_PANTR RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|48728366|gb|AAT46349.1| DDX3Y [Pan troglodytes]
          Length = 660

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 61/170 (35%), Gaps = 11/170 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVEDV-----YDEI 575
              T++ SAT         +  + E I    G V    E I      VED+       +I
Sbjct: 373 VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDI 432

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             AA      L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +
Sbjct: 433 LGAAGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 492

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 493 LVATAVAARGLDISNVRHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 537


>gi|329889383|ref|ZP_08267726.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
 gi|328844684|gb|EGF94248.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
          Length = 490

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 58/184 (31%), Gaps = 15/184 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPP---VEIRSARTQVEDVYDE 574
           R  T+  SAT         Q  + +    ++ RP    D     +    +    +     
Sbjct: 178 RRQTLFFSATMPPEITRLTQQFLKDPTRIEVARPATTADTITQHITRLPSSDP-KAKRTA 236

Query: 575 INLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++G     ++    K   + + + L         +H ++    R++ + D R G+
Sbjct: 237 LRALVERGDVQNGIVFCNRKSEVDIVAKSLQVHGFNAAPIHGDLDQSLRMKTLSDFRSGE 296

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             +LV  ++   GLDIP    V   D             +  IGR  R           T
Sbjct: 297 LKLLVASDVAARGLDIPAVSHVFNYDV-----PHHADDYVHRIGRTGRAGRLGEAFMIVT 351

Query: 693 ITKS 696
               
Sbjct: 352 PADD 355


>gi|257138731|ref|ZP_05586993.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 515

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I + Q I     +   V     R   + + D + 
Sbjct: 247 QTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLL 306

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                    ++   TK  A+ L   L +   +   +H ++    R   IR LR  +  VL
Sbjct: 307 RDTALDQ-AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVL 365

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 366 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 418

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 419 EQGALKRIER 428


>gi|182418672|ref|ZP_02949948.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237669697|ref|ZP_04529674.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377449|gb|EDT75004.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237654771|gb|EEP52334.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 524

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 9/185 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TKR  ++L + L  +   V  MH ++    R+  +   + G  ++L+  ++   
Sbjct: 245 AIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLSKFKEGTLNLLIATDVAAR 304

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-SIQLAIDE 703
           G+D+     V   D       +   S +  IGR  R           T    S+   I +
Sbjct: 305 GIDVDGVTHVFNYD-----LPQDVESYVHRIGRTGRANREGTAYSLVTPKDFSMLKQIQK 359

Query: 704 TTRRREKQLEHNKKHNINPQS---VKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG 760
            T+    Q        I  +    + +++ E I    L       I +      LS    
Sbjct: 360 VTKSAITQKPVPTAEEIKNKKFNDIIKEVTETITSGDLAKFMPNAIELVENNDPLSVVAA 419

Query: 761 KAHLK 765
              +K
Sbjct: 420 LMKIK 424


>gi|126305160|ref|XP_001375615.1| PREDICTED: similar to histone protein Hist2h3c1 [Monodelphis
           domestica]
          Length = 694

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 75/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E        +++    ++    E       ++  Y   N   ++  
Sbjct: 484 QMLLFSAT-----FEDSVWKFARKVVPDPNIIKLKRE-EETLDTIKQYYVMCNNRDEKFQ 537

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 538 ALCNLYGAITIAQAMIFCHTRKTAGWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 597

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 598 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 656

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 657 MVDSKHSMNIL----NR---IQEHFNKK 677


>gi|14861844|ref|NP_149068.1| putative ATP-dependent RNA helicase Pl10 [Mus musculus]
 gi|130256|sp|P16381|DDX3L_MOUSE RecName: Full=Putative ATP-dependent RNA helicase Pl10
 gi|200389|gb|AAA39942.1| PL10 protein [Mus musculus]
 gi|26325502|dbj|BAC26505.1| unnamed protein product [Mus musculus]
 gi|148681106|gb|EDL13053.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
 gi|223460348|gb|AAI39288.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
 gi|223461116|gb|AAI39287.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
          Length = 660

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +   IL+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 432 DLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 491

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 492 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 538


>gi|301755322|ref|XP_002913508.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like [Ailuropoda
           melanoleuca]
          Length = 654

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 492

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 493 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 539


>gi|260576594|ref|ZP_05844582.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
 gi|259021198|gb|EEW24506.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
          Length = 453

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 73/217 (33%), Gaps = 25/217 (11%)

Query: 496 TLAEYGFR--LPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGSWE------LEQCQGIIVE 546
            + + GF   L     + PL+          T++ SAT P   E      L     + V 
Sbjct: 160 QMLDMGFIHALKKIAKHLPLK--------RQTLLFSATMPKLIEDLAQTYLRDPVKVQVA 211

Query: 547 QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
              +P   +   V       +   + + +      G   L+   TK  +E L + L    
Sbjct: 212 PPGKPIEAIVQGVHYTPQGDKARLLEEYL--KTHPGEMALVFGRTKHGSEKLMKLLVAWG 269

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
            +   +H      +R   + + R G  DVLV  ++   G+DI     V   D        
Sbjct: 270 FKAGSIHGNKSQNQRERTLSEFREGALDVLVATDVAARGIDISGVRHVYNYD-----MPN 324

Query: 667 SKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAID 702
              + +  IGR AR   + K + +          AI+
Sbjct: 325 VPENYVHRIGRTARAGADGKAVAFCAPAEMEEIQAIE 361


>gi|253996647|ref|YP_003048711.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
           mobilis JLW8]
 gi|253983326|gb|ACT48184.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
          Length = 576

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 77/199 (38%), Gaps = 23/199 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD--PPVEIRSARTQVEDVYDEINLAAQ- 580
            T++ SAT     L+     I +QI++    V      E  +   Q     D++    + 
Sbjct: 180 QTLLFSAT-----LDGDIARIAQQILKNPKTVQVAAQKEKHANIEQRLHFVDDMTHKNKL 234

Query: 581 --------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                   +  + ++   TKR A+ L E LY    +   +H ++    R   +  LR G 
Sbjct: 235 LEHLLIAPEVNQTIIFTSTKRHADVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRHGD 294

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
             VLV  ++   G+D+     V   D  K          +  IGR  R  N+ + I +A 
Sbjct: 295 VKVLVATDVAARGIDVHGITHVINYDLPKF-----AEDYVHRIGRTGRANNTGIAISFAS 349

Query: 692 TITKSIQLAIDE-TTRRRE 709
            + + +   I++ T  R E
Sbjct: 350 NMDRHLLRKIEQYTGNRLE 368


>gi|229077333|ref|ZP_04210009.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-2]
 gi|228705971|gb|EEL58283.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-2]
          Length = 968

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 143/415 (34%), Gaps = 39/415 (9%)

Query: 368 GQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRIT 427
            +     E ++    + ++  +  L + +++++E L   + +L  +       ++ + ++
Sbjct: 4   QRSQGKKENVRFGPATEFLFSQEELKSGIQHLEEGLTKTMQKLSDDKL---KTKVLETVS 60

Query: 428 YDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMY 487
           +++EML+   S + +  Y            P +L +Y+PED ++ +DE        S + 
Sbjct: 61  HEIEMLKNGQSIEQMFKYLSIFYK-----EPASLIDYLPEDGVVILDEISRIQETASHLE 115

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
             +     +L   G  +     + P  FE +   +  +  V  T     +       +  
Sbjct: 116 TEEAEWYISLLGEGTIIQDLSFSHP--FEGFLHHKKRS-FVYLTLFLRHIAHTHPQNIVN 172

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           +   T        ++    Q+  +  EI+   +     ++        + L   L + +I
Sbjct: 173 VTCKT--------MQDFHGQMNLLKTEIDRWNEGHFTTVVLGTDDERVKKLQHILSDYDI 224

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
                  ++     +E    L  G+  + V    L  G ++P   LV I + +       
Sbjct: 225 EA-----DI-----VEGTDILLPGRLQIAV--GDLHAGFEMPMQKLVVITEKELFHKKVK 272

Query: 668 KTSLIQTIG---RAARNVNSKVILYADTITKSIQLAID-ETTRRREKQLEHNKKHNINPQ 723
           K+   Q +    R       KV  Y   +   I   +  ET    E    H    NI  Q
Sbjct: 273 KSQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIET---LEINGVHKDYLNIKYQ 329

Query: 724 SVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
              +K+   I+ I        +   D +   L     K     + K +   AD+L
Sbjct: 330 G-NDKLYVPIEQIDQVQKYVGSEGKDPKVYKLGGNDWKKVKTKVEKSVQDIADDL 383



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     G+    +I        PV+          + + I     +G 
Sbjct: 566 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGG 625

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           ++          E   + +       R  Y H ++   E   ++     G+ DVLV   +
Sbjct: 626 QVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTI 685

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  G+DIP    + + DAD+ G  +    L Q  GR  R+       +A    K     +
Sbjct: 686 IETGVDIPNVNTLIVFDADRMGLSQ----LYQLRGRVGRSNRVAYAYFAYKRDK----VL 737

Query: 702 DETTRRREKQLEHNKKHN 719
            E   +R + ++   +  
Sbjct: 738 SEVAEKRLQAIKEFTELG 755


>gi|187933940|ref|YP_001887642.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722093|gb|ACD23314.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 526

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 69/186 (37%), Gaps = 11/186 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TK+  ++L E L  +   V  MH ++  + R+  ++  + G  ++L+  ++   
Sbjct: 246 AIIFCRTKKGVDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLIATDVAAR 305

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-SIQLAIDE 703
           G+D+     V   D       +   S +  IGR  R   +       +  +  +   I  
Sbjct: 306 GIDVDGITHVINYD-----LPQDVESYVHRIGRTGRANRTGTAYSLVSPKELGMLKQIQR 360

Query: 704 TTRRREKQLEH----NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
            T+      +     N+ H+    ++  +I E ID         + I ++     +S   
Sbjct: 361 VTK-STITEKSVPTANEIHSRKFTNIMNEIKETIDSGDFSTFVPSAIELNEAYDPISIIA 419

Query: 760 GKAHLK 765
               +K
Sbjct: 420 SLMKIK 425


>gi|16272830|ref|NP_439053.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae Rd KW20]
 gi|260579983|ref|ZP_05847813.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae RdAW]
 gi|1573911|gb|AAC22552.1| ATP-dependent RNA helicase (rhlB) [Haemophilus influenzae Rd KW20]
 gi|260093267|gb|EEW77200.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae RdAW]
          Length = 418

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 91/252 (36%), Gaps = 34/252 (13%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +DE  V +         +  R   L   GF        R +R+    C 
Sbjct: 148 IDYV-KQGVIGLDEIQVVV-------LDEADRMFDL---GFI-------RDIRYLLRKCP 189

Query: 522 RPT---TIVVSAT------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
            P    T++ SAT        ++E       I  +  + TG      E+     Q +   
Sbjct: 190 APQARLTMLFSATLSYKVRELAFEDMNEPEYIEIEPEQKTGHRIKE-ELFYPSNQDKMAL 248

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               +  +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G 
Sbjct: 249 LLTLMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGD 308

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
            D+LV  ++   GL I +   V   D         +   +  IGR  R   S V I +A 
Sbjct: 309 LDILVATDVAARGLHISDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFAC 363

Query: 692 TITKSIQLAIDE 703
                   AI+E
Sbjct: 364 EEYAMNLPAIEE 375


>gi|325269118|ref|ZP_08135738.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
 gi|324988505|gb|EGC20468.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
          Length = 572

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 94/250 (37%), Gaps = 42/250 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG- 582
            TI+ SAT    ++E+    +++  +     V  P E      ++  +        + G 
Sbjct: 183 QTIMFSAT-MPKKIEELAKTLLKNPVEIKLAVSKPAE------KIHQMAYVCYETQKIGI 235

Query: 583 ----------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      R+++   +K+  + +   L  ++I    MHS++   +R +++   + G+
Sbjct: 236 IKDIFKAGDLKRVIIFSGSKQKVKQIAASLSRKHINCGEMHSDLDQEQRNDVMFKFKSGQ 295

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            DVLV  +++  G+DI +  +V   D             +  IGR AR       +   +
Sbjct: 296 IDVLVATDIVARGIDIDDITMVINYDV-----PHDAEDYVHRIGRTARADRDGKAITFVS 350

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
           +                +Q+E           ++++I ++  P  L +      +   ++
Sbjct: 351 VDDIYYF----------QQIE---------AFLEKEIEKIPLPEELGEGPEYKSNGKPKR 391

Query: 753 LSLSKKKGKA 762
            S +K + + 
Sbjct: 392 GSSAKSRRRK 401


>gi|290996658|ref|XP_002680899.1| predicted protein [Naegleria gruberi]
 gi|284094521|gb|EFC48155.1| predicted protein [Naegleria gruberi]
          Length = 452

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 76/208 (36%), Gaps = 20/208 (9%)

Query: 509 DNRPLRFEEWNCLRPTTIVVS----ATP----GSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           D + L F         ++ +S    A P        +E      V+Q        D    
Sbjct: 214 DRQTLFFSATWNRSVQSMAMSYVSKAEPHFIVNIGSIETSANHRVKQSFLFIQESDKIA- 272

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
                 ++ D+ D++    +   R L+   TK+  + +TE L E       +H E K  E
Sbjct: 273 ------RLTDLLDKLIKNPE-DCRTLVFCKTKKRTDVVTERLREAGWPSLSIHGERKQEE 325

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R  ++ + R GK  +LV  ++   GLD+     V   D   E  + S    I   GRA +
Sbjct: 326 REWVLEEFRSGKTPILVATDVAARGLDVENVKYVINYDMPHE--IDSYIHRIGRTGRAGK 383

Query: 681 NVNSKVILYADTIT--KSIQLAIDETTR 706
             NS      + +     +   ++E  +
Sbjct: 384 EGNSVSFFTPEDVQLCTPLIKVLEEAEQ 411


>gi|187935259|ref|YP_001885538.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723412|gb|ACD24633.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 480

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 73/191 (38%), Gaps = 15/191 (7%)

Query: 521 LRPTTIVVSATPGSWELE----QCQGIIVEQIIRPTGLVDPPVEIRSAR---TQVEDVYD 573
            +  T++ SAT    E++    +     ++  I+   L    V   +      Q  D+ +
Sbjct: 175 KKRVTLLFSAT-IPEEIKNLCDKHMNRPIDIAIKSQNLTSDNVSHYAYHVGYNQKLDLLN 233

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I + ++     ++   TK   + + EYL ++      +H  +   +R++ +   R G F
Sbjct: 234 NILI-SEMPETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDF 292

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
            +LV  ++   G+DI     V   D   E     K + +  IGR  R     V + +   
Sbjct: 293 RILVATDIASRGIDIEGITHVINYDIPVE-----KEAYVHRIGRTGRAGAKGVALTFCKD 347

Query: 693 ITKSIQLAIDE 703
                   I+E
Sbjct: 348 SGDRYLNEIEE 358


>gi|121605306|ref|YP_982635.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120594275|gb|ABM37714.1| DEAD/DEAH box helicase domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 417

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 95/251 (37%), Gaps = 38/251 (15%)

Query: 524 TTIVVSAT---------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR-TQ 567
            ++  SAT               P   E+E  +    E + R        +E+  +R TQ
Sbjct: 186 QSLFFSATFPPAIEALAAGMLTDPLRIEVEAVKQAEPEIVQRA-------IEVDPSRRTQ 238

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +     +    +    R+L+ V TK  AE + + L + +I     H E+   +R ++++D
Sbjct: 239 LLRHLAQTEKWS----RVLVFVATKHAAEIVADKLRKADIEAEPFHGELSQGKRNQVLQD 294

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV- 686
            +     V+V  ++   G+DI +  +V   D       RS    I  IGR  R   + + 
Sbjct: 295 FKAKLLQVVVATDVAARGIDIAQLPVVVNYD-----LPRSSVDYIHRIGRTGRAGETGIA 349

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
           I +    T++    I+   +R++  +   +     P  V+  I    DP           
Sbjct: 350 ISFVSAETEAHFKLIE---KRQKMSVPREQVAGFEPVEVQ--IPNAADPAGTGGIKGKRP 404

Query: 747 SIDAQQLSLSK 757
           S   +  +L+ 
Sbjct: 405 SKKDKLRALAA 415


>gi|74006736|ref|XP_861449.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 8 [Canis familiaris]
          Length = 663

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 492

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 493 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 539


>gi|29830989|ref|NP_825623.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29608103|dbj|BAC72158.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 510

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 17/157 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D +      A +  R+++ + TK   + LT+ L    +R   +H      +R   +   +
Sbjct: 304 DKHATTTEIAARDGRVIMFLDTKHAVDRLTKNLLSVGVRASALHGGKSQSQRTRTLAQFK 363

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ +    LV  +D   +         +   GR AR   S  ++ 
Sbjct: 364 DGHVTVLVATNVAARGIHVDNLDLVVNVDPPSD-----HKDYLHRGGRTARAGESGTVVT 418

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
                +           RRE          I PQ+ +
Sbjct: 419 LVLPHQ-----------RREMTRLM-ADAGITPQTTQ 443


>gi|311111123|ref|ZP_07712520.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
 gi|311066277|gb|EFQ46617.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
          Length = 461

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 9/135 (6%)

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           II PT + +  +++ S   + E +Y  + +   Q    L+   TK+  ++LT YL E+ +
Sbjct: 217 IIAPT-IQNDLIDVGSRDKK-EILYKLLTM--GQPYLALVFANTKKTVDELTNYLEEQGL 272

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H  +   ER  IIR +R G++  +V  +L   G+D+P   LV   +  K+     
Sbjct: 273 KVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPGVSLVVNYEIPKD----- 327

Query: 668 KTSLIQTIGRAARNV 682
              +I  IGR  RN 
Sbjct: 328 LEFVIHRIGRTGRNG 342


>gi|67484120|ref|XP_657280.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|167395584|ref|XP_001741647.1| ATP-dependent RNA helicase eIF4A [Entamoeba dispar SAW760]
 gi|56474536|gb|EAL51901.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
 gi|165893771|gb|EDR21906.1| ATP-dependent RNA helicase eIF4A, putative [Entamoeba dispar
           SAW760]
          Length = 391

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 66/172 (38%), Gaps = 15/172 (8%)

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           G+    +++     +++ + D +         + +   +K   E +   L   N  V   
Sbjct: 230 GIKQFYIDVVKDEYKIDTLID-LYQVISVNQSV-IFCNSKNRVEWIQRRLQAHNYPVSIT 287

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H ++   ER  ++ + R G   +L+  ++L  G+D+ +  LV   D        S  S I
Sbjct: 288 HGDLTMEERNNVLNEFRQGATRILITTDMLSRGIDVQQVSLVINFDMPV-----SDESYI 342

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
             IGR+AR     V +   T  +     +D   R    Q  +  K    P++
Sbjct: 343 HRIGRSARFGRKGVAIDFITTEE-----MDTINR---LQKTYETKIVPLPKT 386


>gi|296170155|ref|ZP_06851752.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295895181|gb|EFG74896.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 566

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 6/146 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++ V TK+  E++ E L  R      ++ ++   +R   +  L+ G  D+LV  ++ 
Sbjct: 253 EAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVA 312

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           S +  IGR  R   S   +L+     + +  AI
Sbjct: 313 ARGLDVERISHVLNYD-----IPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLRAI 367

Query: 702 DETTRRREKQLEHNKKHNINPQSVKE 727
           ++ TR+   + E     ++N Q V +
Sbjct: 368 EKATRQTLIEAELPTVEDVNAQRVAK 393


>gi|171687132|ref|XP_001908507.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943527|emb|CAP69180.1| unnamed protein product [Podospora anserina S mat+]
          Length = 489

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 70/186 (37%), Gaps = 16/186 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T++ SAT            + + I    G +D          VE+ S   + + +  E+
Sbjct: 241 QTLMWSATWPKDVRNLASDFLTDFIQVTIGSMDLSANHRITQIVEVVSESEKRDKMIKEL 300

Query: 576 NLAAQQG---LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               +      + L+   TKR+A+++T +L +       +H + +  ER  ++   + GK
Sbjct: 301 EKIMEDKTAENKCLIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGK 360

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             ++V  ++   G+D+     V   D     +  +    I  IGR  R       +   T
Sbjct: 361 SPIMVATDVASRGIDVRNITHVINYD-----YPNNSEDYIHRIGRTGRAGAKGTAITYFT 415

Query: 693 ITKSIQ 698
              + Q
Sbjct: 416 TDNAKQ 421


>gi|74006728|ref|XP_850382.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 2 [Canis familiaris]
          Length = 663

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 492

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 493 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 539


>gi|28377407|ref|NP_784299.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|254555590|ref|YP_003062007.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|300769652|ref|ZP_07079536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179612|ref|YP_003923740.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28270239|emb|CAD63140.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|254044517|gb|ACT61310.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|300492805|gb|EFK27989.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308045103|gb|ADN97646.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 528

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 13/192 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
            T++ SAT    E+++     +++     I+   +    V+    + +  + +D +    
Sbjct: 176 QTMLFSAT-MPPEIKRIGVQFMKEPHHVKIKSKEMTADTVDQYYVKAKEFEKFDIMTRLF 234

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L++ L  R      +H ++    R +I+R  + GK D+LV
Sbjct: 235 DVQAPELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-S 696
             ++   GLD+     V   D       +   S +  IGR  R  +  V L   T  +  
Sbjct: 295 ATDVAARGLDVSGVTHVYNYD-----IPQDPDSYVHRIGRTGRAGHKGVSLTFVTPNEME 349

Query: 697 IQLAIDETTRRR 708
               I++ T++R
Sbjct: 350 YLRVIEKLTKKR 361


>gi|115524965|ref|YP_781876.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115518912|gb|ABJ06896.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           BisA53]
          Length = 517

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 61/189 (32%), Gaps = 16/189 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---------EDVYDE 574
            T+  +AT    E+ +     +   ++          +   ++QV          +   +
Sbjct: 179 QTLFFTAT-MPTEIRRITEAFLHNPVKIEVSKPASTAVTVTQSQVAAGREPHQKRETLRQ 237

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +   A      ++    KR    L + L +    V  +H ++    R   +   R G+  
Sbjct: 238 LLREASDLQNAIIFCNRKREVALLAKSLLKHGFSVGALHGDMDQSARTAALEAFRKGELP 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           +LV  ++   GLDIPE   V   D             +  IGR  R   +   +      
Sbjct: 298 LLVASDVAARGLDIPEVSHVFNFDV-----PHHPDDYVHRIGRTGRAGRAGTAVTLVAPP 352

Query: 694 TKSIQLAID 702
                 AI+
Sbjct: 353 DGKSVAAIE 361


>gi|326470523|gb|EGD94532.1| ATP-dependent RNA helicase DHH1 [Trichophyton tonsurans CBS 112818]
          Length = 362

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 74/225 (32%), Gaps = 35/225 (15%)

Query: 518 WNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           ++      ++ SAT P              +E+     + +  I +    V+   ++   
Sbjct: 70  FHPKDRQVMLFSATFPIIVKTFKDKHMRNPYEINLMDELTLRGITQYYAFVEERQKVH-- 127

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
                   + +    Q    I +   +    E L + + E      Y H+ +    R  +
Sbjct: 128 ------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRV 180

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
             D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  + 
Sbjct: 181 FHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGHL 235

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
            + +          L   E     E Q          P S+ +K+
Sbjct: 236 GLAINLINWDDRYNLYKIEQELGTEIQ--------PIPPSIDKKL 272


>gi|302496500|ref|XP_003010251.1| hypothetical protein ARB_03506 [Arthroderma benhamiae CBS 112371]
 gi|291173793|gb|EFE29611.1| hypothetical protein ARB_03506 [Arthroderma benhamiae CBS 112371]
          Length = 449

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 74/225 (32%), Gaps = 35/225 (15%)

Query: 518 WNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           ++      ++ SAT P              +E+     + +  I +    V+   ++   
Sbjct: 157 FHPKDRQVMLFSATFPIIVKTFKDKHMRNPYEINLMDELTLRGITQYYAFVEERQKVH-- 214

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
                   + +    Q    I +   +    E L + + E      Y H+ +    R  +
Sbjct: 215 ------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRV 267

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
             D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  + 
Sbjct: 268 FHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGHL 322

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
            + +          L   E     E Q          P S+ +K+
Sbjct: 323 GLAINLINWDDRYNLYKIEQELGTEIQ--------PIPPSIDKKL 359


>gi|188587876|ref|YP_001920681.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498157|gb|ACD51293.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 480

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 70/190 (36%), Gaps = 13/190 (6%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSAR---TQVEDVYDE 574
            +  T++ SAT        C   +   I   I+   L    V   +      Q  D+ + 
Sbjct: 175 KKRVTLLFSATIPDEIKNLCDKHMNRPIDIAIKSQNLTSDNVSHYAYHVGYNQKLDLLNN 234

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I + ++     ++   TK   + + EYL ++      +H  +   +R++ +   R G F 
Sbjct: 235 ILI-SEMPETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFR 293

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           +LV  ++   G+DI     V   D   E     K + +  IGR  R     V + +    
Sbjct: 294 ILVATDIASRGIDIEGITHVINYDIPVE-----KEAYVHRIGRTGRAGAKGVALTFCKDS 348

Query: 694 TKSIQLAIDE 703
                  I+E
Sbjct: 349 GDRYLNEIEE 358


>gi|92117844|ref|YP_577573.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14]
 gi|91800738|gb|ABE63113.1| DEAD/DEAH box helicase-like protein [Nitrobacter hamburgensis X14]
          Length = 487

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 61/197 (30%), Gaps = 32/197 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVEDVYDEINLAAQQG 582
            T+  +AT    E+ +     +             +E+ R A         +++   +  
Sbjct: 179 QTLFFTAT-MPNEIRRVTDAFLHNP--------EKIEVSRPATAAATVAQSQVSCGREAH 229

Query: 583 LR----------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            +                 ++    KR    + + L +    V  +H ++    R   + 
Sbjct: 230 EKRELLRRLLRDAKDLKNAIIFCNRKRDVAIVYKSLQKHGFSVGALHGDMDQSARTASLD 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK- 685
             R G+  +LV  ++   GLDIPE   V   D             +  IGR  R   +  
Sbjct: 290 QFRKGELPLLVASDVAARGLDIPEVSHVLNFDV-----PHHPDDYVHRIGRTGRAGRTGT 344

Query: 686 VILYADTITKSIQLAID 702
            I    +       AI+
Sbjct: 345 AITIVCSADFKSVAAIE 361


>gi|83719456|ref|YP_442523.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
 gi|83653281|gb|ABC37344.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 482

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I + Q I     +   V     R   + + D + 
Sbjct: 214 QTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLL 273

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                    ++   TK  A+ L   L +   +   +H ++    R   IR LR  +  VL
Sbjct: 274 RDTALDQ-AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVL 332

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 333 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 385

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 386 EQGALKRIER 395


>gi|95928576|ref|ZP_01311323.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95135366|gb|EAT17018.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 587

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 95/261 (36%), Gaps = 16/261 (6%)

Query: 522 RPTTIVVSAT--PGSW-ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           R    + SAT  P      E+  G   E  I         +E R    +    +D +   
Sbjct: 178 RCQCALFSATMPPAIRRVAERYLGDAQEVQIASRTSTVDQIEQRYLMLRANQKFDVLTRL 237

Query: 579 AQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +       ++ V TK    +L E L  R      ++ ++    R   I  L+ G  D++
Sbjct: 238 IEAQEIDGTIVFVRTKTATTELAERLEARGYNAAPLNGDLSQQVRERTIGRLKNGSLDIV 297

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           +  ++   GLD+     V   D   +       + I  IGR  R   +   IL+     +
Sbjct: 298 IATDVAARGLDVERISHVFNYDIPFD-----TEAYIHRIGRTGRAGRTGTAILFVTPQER 352

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSV---KEKIMEVIDPILLEDAATTNISIDAQQ 752
            +  +I+  T+R  K ++      I  + +   K++I + +D   L D     ++   ++
Sbjct: 353 RLLKSIERATKRDIKPIDVPTSDQIGARRIATFKKQIHDTLDQYSLADLREL-LTTMVEE 411

Query: 753 LSLSKKKGKAHLKSLRKQMHL 773
             L      A L   R+QM  
Sbjct: 412 DGLELLDVAAALA-YRQQMQK 431


>gi|329900791|ref|ZP_08272595.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
 gi|327549380|gb|EGF33948.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
          Length = 468

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 10/166 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII-------RPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT         + I    +I            +   V      +    + D + 
Sbjct: 206 QTMLFSATLDGVVGNMAKRITKNPMIIQIAGSATKHENISQRVHFVDDLSHKNRLLDHLL 265

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +   + ++   TKR A+ + + L         +H ++    R   +  +R G+  VL
Sbjct: 266 -RDETMDQAVVFTATKRDADTIADRLNIAGFAAAALHGDMHQGARNRTLDGMRRGQVRVL 324

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           V  ++   G+D+P    V   D  K  F       I   GRA RN 
Sbjct: 325 VATDVAARGIDVPAITHVFNYDLPK--FPEDYVHRIGRTGRAGRNG 368


>gi|254524903|ref|ZP_05136958.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp.
           SKA14]
 gi|219722494|gb|EED41019.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp.
           SKA14]
          Length = 473

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 83/239 (34%), Gaps = 18/239 (7%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D        +SG+          + + GF LPS    R L   +       T++ SAT
Sbjct: 137 LIDHLERRSIDLSGIELLVLDEADRMLDMGF-LPSIK--RIL--AKLPKQNRQTLLFSAT 191

Query: 532 --PGSWELEQCQGIIVEQI-IRPTGLVDPPVE--IRSAR-TQVEDVYDEINLAAQQGLRI 585
                 +L        EQI + P   V   +   +      +  D+   +     +  + 
Sbjct: 192 FEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKRDLLLHLLAQDSR-EQT 250

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+   TK  ++ L  +L +  I+   +H      +R+  + D + G+  VLV  ++   G
Sbjct: 251 LVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTVLVATDIAARG 310

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           +DI E   V   D             +  IGR  RN  +   I         +  AI  
Sbjct: 311 IDINELPKVINFDLPMV-----AEDYVHRIGRTGRNGATGQAISLVAQDEVKLLRAITR 364


>gi|32363501|sp|P44922|RHLB_HAEIN RecName: Full=ATP-dependent RNA helicase rhlB
          Length = 415

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 91/252 (36%), Gaps = 34/252 (13%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +DE  V +         +  R   L   GF        R +R+    C 
Sbjct: 145 IDYV-KQGVIGLDEIQVVV-------LDEADRMFDL---GFI-------RDIRYLLRKCP 186

Query: 522 RPT---TIVVSAT------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
            P    T++ SAT        ++E       I  +  + TG      E+     Q +   
Sbjct: 187 APQARLTMLFSATLSYKVRELAFEDMNEPEYIEIEPEQKTGHRIKE-ELFYPSNQDKMAL 245

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               +  +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G 
Sbjct: 246 LLTLMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGD 305

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
            D+LV  ++   GL I +   V   D         +   +  IGR  R   S V I +A 
Sbjct: 306 LDILVATDVAARGLHISDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFAC 360

Query: 692 TITKSIQLAIDE 703
                   AI+E
Sbjct: 361 EEYAMNLPAIEE 372


>gi|330812324|ref|YP_004356786.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380432|gb|AEA71782.1| putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 622

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 11/193 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGII--VEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +   ++ SAT      +    ++   E+I + P       +E R  R         +   
Sbjct: 184 KRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLAHL 243

Query: 579 AQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              G   ++L+   TK  A  L EYL +  +    +H       R + + D + G+  +L
Sbjct: 244 ITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEVRIL 303

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI +   V   +             +  IGR  R   S   I       +
Sbjct: 304 VATDIAARGLDIDQLPHVVNFE-----LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEE 358

Query: 696 SIQLAIDETTRRR 708
            +  +I+  T+++
Sbjct: 359 KLLKSIERMTKQK 371


>gi|125555969|gb|EAZ01575.1| hypothetical protein OsI_23609 [Oryza sativa Indica Group]
          Length = 442

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 85/247 (34%), Gaps = 25/247 (10%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            V+ S V++  I  +   +  R     + GF     +     R          T++ SAT
Sbjct: 81  MVERSKVSLEAIKYLVMDEADRM---LDMGFE--PQIRKIVERMNMPRKSVRQTMLFSAT 135

Query: 532 PGSWELEQCQG-------IIVEQIIRPTGLVDPPVEIRS---ARTQVEDVYDEINLAAQQ 581
                             I V ++   T L+   VE+ S    R  + D+    ++    
Sbjct: 136 FPPEIQRLASDFLSNYIFITVGRVGSSTDLIMQKVELLSDGEKRGYLLDLLQRQSVGVAN 195

Query: 582 GLR----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                   L+ V TKR A+ L  +LY +      +H +    ER   +R  + G   ++V
Sbjct: 196 SKLQQPLTLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMV 255

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLD+P    V   D  K     S    +  IGR  R   +     +      S
Sbjct: 256 ATDVASRGLDVPNVAHVINYDLPK-----SVEDYVHRIGRTGRAGKAGSATAFFTESDHS 310

Query: 697 IQLAIDE 703
           +   + E
Sbjct: 311 LAKGLLE 317


>gi|25010852|ref|NP_735247.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae NEM316]
 gi|76786821|ref|YP_329524.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909]
 gi|76799328|ref|ZP_00781491.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 18RS21]
 gi|77406817|ref|ZP_00783849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
 gi|77411327|ref|ZP_00787675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|23095231|emb|CAD46441.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561878|gb|ABA44462.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae A909]
 gi|76585318|gb|EAO61913.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 18RS21]
 gi|77162587|gb|EAO73550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|77174571|gb|EAO77408.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
          Length = 528

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 93/261 (35%), Gaps = 23/261 (8%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT   P      +         I+ T L +  V+   +R    +  D    +  
Sbjct: 176 QTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLMD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ +IRD +    D+LV
Sbjct: 236 -VDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +  
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG 349

Query: 698 QLAIDET-TRRREKQL-------EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
            L I E  T++R   +           K  +  + +     +       +      + + 
Sbjct: 350 YLTIIENLTKKRMTGMKPATASEAFQAKKKVALKRIARDFEDQELVSKFDKFKADALELA 409

Query: 750 AQQLSLSKKKGKAHLKSLRKQ 770
            Q    + ++   ++ SL  Q
Sbjct: 410 TQY---TPEELALYVLSLTVQ 427


>gi|291407215|ref|XP_002720005.1| PREDICTED: CG7878-like [Oryctolagus cuniculus]
          Length = 635

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 9/129 (6%)

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +++  + +        ++++ V  K  A+DL   L  + I +  +H + +  +R + + D
Sbjct: 465 IQEFLENMTPR----DKVIVFVSRKITADDLASDLGIQGIPIESLHGDREQSDREQALED 520

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            R GK  +L+  +L   GLD+ +   V   D     F R+    +  IGR  R       
Sbjct: 521 FRTGKVKILIATDLASRGLDVNDITHVYNYD-----FPRNIEEYVHRIGRTGRAGKVGTS 575

Query: 688 LYADTITKS 696
           +   T   +
Sbjct: 576 ITLVTPNDA 584


>gi|225563316|gb|EEH11595.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 653

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 51/138 (36%), Gaps = 6/138 (4%)

Query: 568 VEDVYDEIN-LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           V D+        A +    L+  +       LTE      +  RY+ S+     R + + 
Sbjct: 279 VNDITVRAWLSRASERKSTLVFGVNIEHVRCLTEAFRRFGVDARYITSQTSKDIRTDELE 338

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R  ++ VLV   L  EG DIP    V +    +     SK  LIQ IGR  R    K 
Sbjct: 339 AFRNQEYPVLVNCGLFTEGTDIPNIDCVLLARPTR-----SKNLLIQMIGRGLRLYPGKK 393

Query: 687 ILYADTITKSIQLAIDET 704
             +   +  S+   I  T
Sbjct: 394 NCHIIDMVASLGTGITST 411


>gi|183984161|ref|YP_001852452.1| cold-shock DEAD-box protein, DeaD [Mycobacterium marinum M]
 gi|183177487|gb|ACC42597.1| cold-shock DEAD-Box protein, DeaD [Mycobacterium marinum M]
          Length = 571

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 75/210 (35%), Gaps = 28/210 (13%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++ V TK+  E++ E L  R      ++ ++   +R   I  LR G  D+LV  ++ 
Sbjct: 253 EAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTITALRDGGIDILVATDVA 312

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
             GLD+     V   D           S +  IGR  R   S   L   +  +   L + 
Sbjct: 313 ARGLDVERISHVLNYD-----IPHDTESYVHRIGRTGRAGRSGAALLFVSPRERHLLKLI 367

Query: 703 ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKA 762
           E   R               Q++ E  +  ++ +  +  A    SI     +   +  + 
Sbjct: 368 EKATR---------------QTLTEAELPTVEDVNAQRVAKFADSITHALSNTGIELFRR 412

Query: 763 HLKSLRKQ----MHLAADNLNFEEAARIRD 788
            ++   ++    M   A  L    A + RD
Sbjct: 413 LVEDYEREHNVPMADIAAAL----ALQSRD 438


>gi|118444591|ref|YP_877094.1| ATP-dependent RNA helicase [Clostridium novyi NT]
 gi|118135047|gb|ABK62091.1| ATP-dependent RNA helicase [Clostridium novyi NT]
          Length = 528

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 91/234 (38%), Gaps = 34/234 (14%)

Query: 496 TLAEYGFR------LPSCMDNRPLRFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQ 547
            + + GFR      + S  +NR             TI+ SAT      EL +      E 
Sbjct: 158 EMLDMGFRDDIETIIQSVPENR------------QTILFSATMPKAIVELSKKYQTKAEF 205

Query: 548 I-IRPTGLVDPPVEIRSARTQ----VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           I +    L  P +E R    +    +E +   I++   +    ++   TK+  +++   L
Sbjct: 206 IKVVHRQLTVPNIEQRYIEVKENFKIEVLSRLIDMRNPK--LSVIFCNTKKRVDEVVSEL 263

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
             R      +H ++K  +R  ++   R G  ++LV  ++   G+D+ +   V   D    
Sbjct: 264 QSRGYFAEGLHGDMKQPQRDRVMSKFRNGTIEILVATDVAARGIDVDDVEAVFNYD---- 319

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNK 716
              + +   +  IGR  R   S  I +     K+++  + +  R  + +++  +
Sbjct: 320 -LPQDEEYYVHRIGRTGRAGRSG-IAFTFVAGKAMRK-LRDIERYTKTKIKRAE 370


>gi|157819755|ref|NP_001102328.1| hypothetical protein LOC364073 [Rattus norvegicus]
 gi|149040979|gb|EDL94936.1| rCG20177 [Rattus norvegicus]
          Length = 659

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +   IL+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 431 DLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 490

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 491 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 537


>gi|21244335|ref|NP_643917.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109989|gb|AAM38453.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 460

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 29/226 (12%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC---------MDNRPLRF-EEWNCL 521
            +D        +SG+          + + GF LPS           D + L F   +   
Sbjct: 136 LIDHIERRSVDLSGIEVLILDEADRMLDMGF-LPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLAA 579
                          LE  +  +  Q+  P+  V   +   +       +       LA 
Sbjct: 195 IKQLA----------LEFMRNPVQIQVT-PSNTVAESITHRVHPVDGARKRDLLLHLLAQ 243

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               + L+   TK  ++ L  +L +  I+   +H      +R+  + D + G+  VLV  
Sbjct: 244 DSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVAT 303

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           ++   G+DI +   V   D             +  IGR  RN ++ 
Sbjct: 304 DIAARGIDIDQLPKVINYDLPMV-----AEDYVHRIGRTGRNGSTG 344


>gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
 gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
          Length = 509

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 78/206 (37%), Gaps = 36/206 (17%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-DVYDEINLAAQQG 582
            T++ SAT    E+++               ++ P  +     Q+  D+ D+     +  
Sbjct: 175 QTLLFSAT-VPQEIKR----------IADNFMNDPATVHVKTKQMTADLIDQYYSRCKDY 223

Query: 583 LRI---------------LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            +                ++   TKR  +++   L ER      +H ++   +R+ ++R+
Sbjct: 224 EKFDLLTRFIDVQNPELSIVFARTKRRVDEVARGLVERGYSAEGIHGDLSQDKRLGVLRN 283

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-V 686
            + GK D+LV  ++   GLDI     V   D       +   S +  IGR  R       
Sbjct: 284 FKNGKLDILVATDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKEGMS 338

Query: 687 ILYADTITKSIQLAIDETTRRREKQL 712
           + +  +   S    I++ T   +KQ+
Sbjct: 339 VTFVTSNEMSYLRTIEDLT---KKQM 361


>gi|239626754|ref|ZP_04669785.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239516900|gb|EEQ56766.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47FAA]
          Length = 572

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 98/264 (37%), Gaps = 28/264 (10%)

Query: 524 TTIVVSAT----PGSWELEQCQGIIVEQIIRP----TGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT          +     +  ++I+       +     E++  + +VE +   +
Sbjct: 180 QTLMFSATMPQAIADIARKFQDDPVTVRVIKKELTVPKVTQYYYEVKP-KNKVEVMCRLL 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++ A +    ++   TKR  ++L + L  R      +H ++K ++R  ++   R G+ D+
Sbjct: 239 DMYAPK--LSIVFCNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRTDI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+D+ +   V   D       +     +  IGR  R               
Sbjct: 297 LVATDVAARGIDVGDVEAVFNYDV-----PQDDEYYVHRIGRTGRAGREGKAFSLV---- 347

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATT-NISIDAQQLS 754
                  E  + R+ Q     K  I PQ++   + ++ +  + +      +I  D     
Sbjct: 348 ----VGKEVYKLRDIQ--RYCKTKIIPQAIP-SLNDITEIKVEKVLDQVMDILNDNDLTK 400

Query: 755 LSKKKGKAHLKSLRKQMHLAADNL 778
           +     K  ++     M LAA  L
Sbjct: 401 MVNIIEKKLIEEDYTSMDLAAALL 424


>gi|223590207|sp|A5DE68|FAL1_PICGU RecName: Full=ATP-dependent RNA helicase FAL1
 gi|190345565|gb|EDK37471.2| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 397

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 68/176 (38%), Gaps = 21/176 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVE---DVY 572
             +VVSAT     LE       + +        +   G+    ++      + +   D+Y
Sbjct: 199 QVVVVSATLTPEVLEMTNKFTSDPVKILVKRDDVTLKGIKQYYIQCEKEDWKFDTLCDLY 258

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + +      + ++   TK     L   + + N  V  MH ++K  +R  I+++ R G 
Sbjct: 259 DNLTIT-----QAVIFCNTKAKVNWLAGQMRKSNFTVAAMHGDMKQEDRDSIMKEFRSGS 313

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             VL+  ++   G+D+ +  LV   D         K + +  IGR+ R       +
Sbjct: 314 TRVLISTDVWARGIDVQQVSLVINYD-----LPLDKENYVHRIGRSGRFGRKGTAI 364


>gi|78049289|ref|YP_365464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325928526|ref|ZP_08189714.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
 gi|78037719|emb|CAJ25464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325541065|gb|EGD12619.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
          Length = 462

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 29/226 (12%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC---------MDNRPLRF-EEWNCL 521
            +D        +SG+          + + GF LPS           D + L F   +   
Sbjct: 136 LIDHIERRSVDLSGIEVLILDEADRMLDMGF-LPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLAA 579
                          LE  +  +  Q+  P+  V   +   +       +       LA 
Sbjct: 195 IKQLA----------LEFMRNPMQIQVT-PSNTVAESITHRVHPVDGARKRDLLLHLLAQ 243

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               + L+   TK  ++ L  +L +  I+   +H      +R+  + D + G+  VLV  
Sbjct: 244 DSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVAT 303

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           ++   G+DI +   V   D             +  IGR  RN ++ 
Sbjct: 304 DIAARGIDIDQLPKVINYDLPMV-----AEDYVHRIGRTGRNGSTG 344


>gi|331268314|ref|YP_004394806.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
 gi|329124864|gb|AEB74809.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
          Length = 528

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 108/266 (40%), Gaps = 34/266 (12%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIR----SARTQVEDVYDEIN 576
            TI+ SAT      EL +      E I +    L  P +E R        ++E +   I+
Sbjct: 180 QTILFSATMAKAIIELSKKYQNNAEFIKVVHKQLTVPNIEQRYLEVKENNKLEVLSRLID 239

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +   +    ++   TK+  +++   L  R      +H ++K  +R  ++   R G  ++L
Sbjct: 240 MRNPK--LSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNGTIEIL 297

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+D+ +   V   D       + +   +  IGR  R   S  I +     K+
Sbjct: 298 VATDVAARGIDVDDVEAVFNYD-----LPQDEEYYVHRIGRTGRAGRSG-IAFTFVAGKA 351

Query: 697 IQLAIDETTRRREKQLEHNK----------KHNINPQSVKEKIM--------EVIDPILL 738
           I+  + +  R  + +++  +          K N   + VK  I         + I+ +L 
Sbjct: 352 IRK-LRDIERYTKTKVKRAEIPSASDVEEFKANTFLEKVKNTIEEGHLGKYIDYIENLLD 410

Query: 739 EDAATTNISIDAQQLSLSKKKGKAHL 764
           ED AT +I+    ++SL ++K +  L
Sbjct: 411 EDYATIDIAAALLKMSLGEEKKEEIL 436


>gi|329895752|ref|ZP_08271143.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088]
 gi|328922182|gb|EGG29538.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088]
          Length = 462

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 51/211 (24%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-------VYDEIN 576
            T++ SAT             +++I R        ++   A  QV+D       V +++ 
Sbjct: 180 QTLLFSAT---------YPDNIQKISRS-------IQANPAMVQVDDDVAHEEGVIEQLF 223

Query: 577 LAAQQGLR---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
              ++  R                 +   TK+   ++ ++L E +I  + +H ++   ER
Sbjct: 224 FEIKKHERYPTLLALFEHYRPKNAAVFCNTKKQCAEVADFLNEHDIEAKALHGDMDQRER 283

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            +++     G   VLV  ++   GLDI    +V   +       R     +  IGR  R 
Sbjct: 284 DQVLLQFANGSCPVLVATDVAARGLDIKSLAMVVNYE-----LPRDPEIYVHRIGRTGRA 338

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQL 712
             + +     T +        ET R R+ + 
Sbjct: 339 GETGLAFSLVTES--------ETPRLRQIEQ 361


>gi|195591171|ref|XP_002085316.1| GD12376 [Drosophila simulans]
 gi|194197325|gb|EDX10901.1| GD12376 [Drosophila simulans]
          Length = 592

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 80/214 (37%), Gaps = 23/214 (10%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    +QGL+  +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G 
Sbjct: 357 MRDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFREGS 416

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
             VL+   L+  G+D     LV   D     F  +  S I  IGR  R       I +  
Sbjct: 417 IWVLICTELMGRGIDFKGVNLVINYD-----FPPTTISYIHRIGRTGRAGRPGRAITFFT 471

Query: 692 TITKSIQLAID---------------ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
               S   +I                +  + R+ + +   K  ++ + +  KI       
Sbjct: 472 QEDTSNLRSIALIIKNSGGTVPEYMLQMKKVRKSEAKMRAKKPLDREDISTKIRPETKGD 531

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQ 770
               +A         ++  ++K  +  LK+ +K+
Sbjct: 532 DKHKSAKLKKVEKTDKILKNRKGNEKDLKTKQKK 565


>gi|148700136|gb|EDL32083.1| mCG141508, isoform CRA_b [Mus musculus]
          Length = 398

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 39/256 (15%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 26  PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 85

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 86  DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 144

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 145 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICVCFYQ 199

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 200 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 246

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 247 AVDFFRPSAQRLIEEK 262


>gi|111225403|ref|YP_716197.1| ATP-dependent RNA helicase-like protein [Frankia alni ACN14a]
 gi|111152935|emb|CAJ64683.1| DEAD-box protein family; ATP-dependent RNA helicase-like protein
           [Frankia alni ACN14a]
          Length = 532

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 17/181 (9%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT PG         +++   +  EQ      +      +   R    D  + + 
Sbjct: 159 QTMLFSATMPGPVISLARRFMQRPVHVRAEQPDETRTVPTTHQHV--FRAHALDKMEVLA 216

Query: 577 LAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              Q G R   ++ V T+R A+ + E L +R      +H ++   +R + +R  R GK D
Sbjct: 217 RVLQAGGRGLAMVFVRTRRTADKVAEDLDKRGFAAAAVHGDLGQGQREQALRAFRAGKVD 276

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           VLV  ++   G+DI     V             +   +  IGR  R   S V + + D  
Sbjct: 277 VLVATDVAARGIDISGVTHVVNY-----QCPEDENVYLHRIGRTGRAGESGVAVTFVDWD 331

Query: 694 T 694
            
Sbjct: 332 D 332


>gi|37197585|dbj|BAC93424.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 441

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 77/212 (36%), Gaps = 21/212 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVEDVYDEINLAAQ 580
           R  T++ SAT    E +  +G   + +  P  +   P    R   TQ     D +     
Sbjct: 213 RKQTMLFSAT---LEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRADSMEHKLA 269

Query: 581 --------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                   Q  R ++ + T+    DL  +L    +   ++  E+    R   I   R G 
Sbjct: 270 LLKDIINNQAERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGS 329

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            +VL+  ++   G+D+P+   V   D  +     S    +  IGR AR       I   +
Sbjct: 330 VNVLLATDVAARGIDLPDVSHVVNFDMPR-----SADVYLHRIGRTARAGKKGNAISIVE 384

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
              + +   +D   R  ++ ++      + PQ
Sbjct: 385 AHDQPM---MDRVARYVKEDIKERFVKELRPQ 413


>gi|66800707|ref|XP_629279.1| hypothetical protein DDB_G0293168 [Dictyostelium discoideum AX4]
 gi|74896763|sp|Q54CE0|DDX17_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx17; AltName:
           Full=DEAD box protein 17
 gi|60462734|gb|EAL60936.1| hypothetical protein DDB_G0293168 [Dictyostelium discoideum AX4]
          Length = 785

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 61/182 (33%), Gaps = 16/182 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA----- 578
            T++ SAT            + + I    G     +       Q+ +V  +         
Sbjct: 564 QTLMFSATWPKEVQALAHDFLTDHIQVHIG--STEITANHNVRQIVEVCQDFEKKERMLS 621

Query: 579 ----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  ++++   T++  +DL   L     +   +H      ER  ++   + G   
Sbjct: 622 FLGSVGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVP 681

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +++  ++   GLDI +   V   D     F  +    I  IGR AR   S V     T  
Sbjct: 682 IMIATDVASRGLDIKDIKYVVNYD-----FPNTIEVYIHRIGRTARAGASGVSYSLLTTD 736

Query: 695 KS 696
            +
Sbjct: 737 NA 738


>gi|325577716|ref|ZP_08147991.1| ATP-dependent RNA helicase RhlB [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160461|gb|EGC72587.1| ATP-dependent RNA helicase RhlB [Haemophilus parainfluenzae ATCC
           33392]
          Length = 419

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 94/253 (37%), Gaps = 36/253 (14%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +D+  V +         +  R   L   GF        R +R+    C 
Sbjct: 144 IDYV-KQGIIRLDDIQVVV-------LDEADRMFDL---GFI-------RDIRYLLRKCP 185

Query: 522 RPT---TIVVSAT------PGSWELEQCQGIIVEQIIRPTG-LVDPPVEIRSARTQVEDV 571
            P    T++ SAT        ++E       I  +  + TG  +   +   S   ++  +
Sbjct: 186 SPQERLTMLFSATLSYKVRELAFEDMNSPEYIEIEPEQKTGHRIKEELFYPSNEDKIPLL 245

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
              +    +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G
Sbjct: 246 LTLMEE--EWPERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFADG 303

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
           + D+LV  ++   GL I +   V   D         +   +  IGR  R   S V I +A
Sbjct: 304 ELDILVATDVAARGLHISDVTHVFNFD-----LPDDREDYVHRIGRTGRAGESGVSISFA 358

Query: 691 DTITKSIQLAIDE 703
                    AI+E
Sbjct: 359 CEEYAMNLPAIEE 371


>gi|295101481|emb|CBK99026.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           L2-6]
          Length = 395

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 70/195 (35%), Gaps = 18/195 (9%)

Query: 520 CLRPTTIVVSATPGSWELE---QCQGIIVEQIIRPTGLVDPPVEIR----SARTQVEDVY 572
             R +  + SAT     ++     Q    E  ++P     P +       S R ++ D+ 
Sbjct: 173 KARKSLSMFSATISREVMDIGWMYQKDAEEITVQPKEESQPKITQYMLETSGRNKLSDLA 232

Query: 573 DEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             I     +G  R+++   TK     L   L      V  +H ++   ER  I+++ R G
Sbjct: 233 QII---IGEGYKRVMVFCDTKFNTAALANQLARLGFSVDCLHGDLSQNERNRIMQNFRDG 289

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           K +VLV  ++   G+D+ +   V   D   +            IGR  R     V     
Sbjct: 290 KLNVLVATDVAARGIDVSDVDAVINYDVPGDN-----EHYTHRIGRTGRAKKEGVSYLFY 344

Query: 692 TITKSIQLAIDETTR 706
              +  +  + E  R
Sbjct: 345 VPEE--KKRVQELLR 357


>gi|223997538|ref|XP_002288442.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220975550|gb|EED93878.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 421

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 17/195 (8%)

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGI-IVEQIIRPTGLVDPPVEI-- 561
           P+ +    L F     + P  I V    G   +    G   ++  +     V   VE+  
Sbjct: 180 PAAIQQLALEF----MMEPICIYV----GFESIVGSNGENSIDDSLSANKRVSQTVEVIE 231

Query: 562 -RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
            R+   ++ ++  +     ++  RIL+  L K+ A  +   L         +H +     
Sbjct: 232 DRAREERLRELIKKYTGGKRKNDRILVFALYKKEAARIEGTLNRWGFSCASIHGDKTQDA 291

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R   + + + G   +LV  ++   GLDIP+  +V         F  +    +  IGR  R
Sbjct: 292 RNRALAEFKDGSCPILVATDVAARGLDIPDVEVVLNY-----TFPLTIEDYVHRIGRTGR 346

Query: 681 NVNSKVILYADTITK 695
              S +         
Sbjct: 347 AGKSGISYTFFQPGD 361


>gi|187924463|ref|YP_001896105.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
 gi|187715657|gb|ACD16881.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 542

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 25/198 (12%)

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVD---PPVEIRSARTQVEDVYDEINLAAQQGL 583
           +V+ATP + +       +  +I   TG +      +EI     Q  ++   ++    +  
Sbjct: 239 IVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRLEQRTNIAQTVHYVDDRDH 298

Query: 584 R---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +                ++   TK  A+ L   L +       +H ++    R   IR L
Sbjct: 299 KDRLLDHLLRDEGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTIRAL 358

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R  +  VLV  ++   G+DIP    V   D  K          +  IGR  R   S + +
Sbjct: 359 RERRVRVLVATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGIAV 413

Query: 689 YADTITKSIQLAIDETTR 706
               +  + Q A+    R
Sbjct: 414 SL--VHHAEQGALKRIER 429


>gi|28199914|ref|NP_780228.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa Temecula1]
 gi|32363278|sp|Q879Y6|RHLB_XYLFT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|28058045|gb|AAO29877.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
          Length = 543

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 86/244 (35%), Gaps = 29/244 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+ +  ++ +    + +         +  R   L   GF      D R +   
Sbjct: 141 TPGRLIDYLKQHEVVSLRVCEICV-------LDEADRMFDL---GFI----KDIRFILRR 186

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII--VEQIIRPTGLVDP-PVEIRSA----RTQVE 569
                   T++ SAT     LE     +   E+++  T  V    V  R        ++ 
Sbjct: 187 LPERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFPAEEEKIP 246

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   ++    +G+R ++ V TK   E +   L E   RV  +  +V   +R  ++   +
Sbjct: 247 LLLGLLS--RNEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQ 304

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G+ ++LV  ++   GL I     V   D             +  IGR AR       I 
Sbjct: 305 KGQLEILVATDVAARGLHIDGVNYVYNYD-----LPFDAEDYVHRIGRTARLGADGDAIS 359

Query: 689 YADT 692
           +A  
Sbjct: 360 FACE 363


>gi|113968755|ref|YP_732548.1| ATP-dependent RNA helicase RhlB [Shewanella sp. MR-4]
 gi|114049101|ref|YP_739651.1| ATP-dependent RNA helicase RhlB [Shewanella sp. MR-7]
 gi|123030016|sp|Q0HN76|RHLB_SHESM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|123326096|sp|Q0HQL1|RHLB_SHESR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|113883439|gb|ABI37491.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
 gi|113890543|gb|ABI44594.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 439

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 76/231 (32%), Gaps = 36/231 (15%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLR 522
            +D     I  ++ +          + + GF         R+P+      + F     ++
Sbjct: 145 IIDYVRQGIISLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQRLNMLFSATLSMK 204

Query: 523 PTTIVVS--ATPGSWEL---EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
              +       P   E+   E+    I E+I  P+                ED    +  
Sbjct: 205 VQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQ---------------EDKIRLLLT 249

Query: 578 AAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             ++    + ++   TK   E+L  +L     RV  +  +V   +RI I+     G+ D+
Sbjct: 250 LIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDI 309

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LV  ++   GL I +   V   D             +  IGR  R  N  V
Sbjct: 310 LVATDVAARGLHISDVSHVYNYD-----LPDDCEDYVHRIGRTGRAGNKGV 355


>gi|255030366|ref|ZP_05302317.1| hypothetical protein LmonL_17026 [Listeria monocytogenes LO28]
          Length = 410

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 86/252 (34%), Gaps = 31/252 (12%)

Query: 521 LRPTTIVVSATPGSWELEQ--CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
            +   +  SAT    E++    +      +I        P+       Q ++    +   
Sbjct: 111 KQRQNLFFSAT-MPEEMQDLIKRYQDNPMVIEMASEKTNPI--FHVEMQTDNKEKTLKDV 167

Query: 579 --AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +     ++   TK   ++LT+ L   +++   +H  ++  +R   + D + GK   L
Sbjct: 168 LITENPDSAIIFCNTKNQVDELTDLL---DVKASKIHGGLRQEDRFRAMDDFKSGKSRFL 224

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITK 695
           +  ++   G+D+    LV   D   E     K + +  IGR  R   S K I +  T   
Sbjct: 225 IATDVAGRGIDVDNVSLVINYDLPIE-----KENYVHRIGRTGRAGKSGKAISFVKTNEN 279

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
            +   I+E                I     K++   VI+  + EDA              
Sbjct: 280 PLLRDIEEM-----------LDVTIE----KKRKPTVIEVKVNEDAFRKKQQKRPTIKKA 324

Query: 756 SKKKGKAHLKSL 767
             +K   ++  L
Sbjct: 325 RGEKLNKNIMKL 336


>gi|294867179|ref|XP_002764990.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239864870|gb|EEQ97707.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 580

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 10/130 (7%)

Query: 562 RSARTQ---VEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
                Q   +++V  ++    +     + L+   TKR  + LT+ L  +      +HS+ 
Sbjct: 412 HPGMKQKEFMDNVIPKVWNVLESNGEAKALIFCNTKREVDQLTQLLRSQGYNAVCIHSDK 471

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
           +  ER  +    R G   +LV  NL+  G+DI     V   D       ++    +  IG
Sbjct: 472 EQSEREWVFAQYRDGDVRLLVATNLMGRGVDIKNIQFVINYD-----MPQNVEEYVHRIG 526

Query: 677 RAARNVNSKV 686
           R AR      
Sbjct: 527 RTARAGAHGT 536


>gi|196250549|ref|ZP_03149239.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
 gi|196209898|gb|EDY04667.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
          Length = 467

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 11/196 (5%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L E L  R      +H ++   +R+ ++R  + G  ++LV 
Sbjct: 237 IQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI     V   D       +   S +  IGR  R   + V +   T  +  Q
Sbjct: 297 TDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQ 351

Query: 699 -LAIDETTRRREKQLE---HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
              I+ TT+R+ ++++    N+      +   EK++ V +   L         +  +  S
Sbjct: 352 LHHIERTTKRKMERMKPPTLNEALEGQQRIAIEKLLNVAEAENLSFYKRAAEELLEEHDS 411

Query: 755 LSKKKGKAHLKSLRKQ 770
           ++     A LK L ++
Sbjct: 412 VTI--VAACLKMLTRE 425


>gi|182682666|ref|YP_001830826.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa M23]
 gi|182632776|gb|ACB93552.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
 gi|307578947|gb|ADN62916.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 544

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 86/244 (35%), Gaps = 29/244 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+ +  ++ +    + +         +  R   L   GF      D R +   
Sbjct: 142 TPGRLIDYLKQHEVVSLRVCEICV-------LDEADRMFDL---GFI----KDIRFILRR 187

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII--VEQIIRPTGLVDP-PVEIRSA----RTQVE 569
                   T++ SAT     LE     +   E+++  T  V    V  R        ++ 
Sbjct: 188 LPERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFPAEEEKIP 247

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   ++    +G+R ++ V TK   E +   L E   RV  +  +V   +R  ++   +
Sbjct: 248 LLLGLLS--RNEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQ 305

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G+ ++LV  ++   GL I     V   D             +  IGR AR       I 
Sbjct: 306 KGQLEILVATDVAARGLHIDGVNYVYNYD-----LPFDAEDYVHRIGRTARLGADGDAIS 360

Query: 689 YADT 692
           +A  
Sbjct: 361 FACE 364


>gi|114569874|ref|YP_756554.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris
           MCS10]
 gi|114340336|gb|ABI65616.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
          Length = 498

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 106/325 (32%), Gaps = 77/325 (23%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++     LL       T  Q+  +   D      + + GF         P   +
Sbjct: 129 TPGRLLDHFGRGKLLM------TGVQMLVVDEADR-----MLDMGFI--------PDLEK 169

Query: 517 EWNCLRP----TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSART--QVE 569
            ++ + P     T+  SAT    E++      +    R        VE+ R A+T   + 
Sbjct: 170 IFSLVPPAPRRQTLFFSAT-MPKEIQSLVDRFLRDPER--------VEVSRPAQTGANIT 220

Query: 570 DVYDEINLAAQQGLRI--------------LLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
            +   +   + +  R+              ++    KR  + +   L         +H +
Sbjct: 221 QLMIRLTDNSAKAKRLALRQAMSREGVKNGIIFSNRKRDVDVVARSLQRHGFSAAPIHGD 280

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    R   + D + G    LV  ++   GLDIP+   V   D             +  I
Sbjct: 281 LDQSARTATLADFKAGTLRFLVASDVAARGLDIPDVSHVFNYD-----MPHHADDYVHRI 335

Query: 676 GRAARNVNSK--VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVI 733
           GR  R   S   V ++A    KS+   +                     + +KE+I E++
Sbjct: 336 GRTGRAGKSGESVTIFAPGDEKSLAAVL---------------------KLIKEEIPELV 374

Query: 734 DPILLEDAATTNISIDAQQLSLSKK 758
                +  A+   S DA+  + + K
Sbjct: 375 LDGNGDAPASKASSPDAKSEAAAPK 399


>gi|222617918|gb|EEE54050.1| hypothetical protein OsJ_00740 [Oryza sativa Japonica Group]
          Length = 468

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 15/187 (8%)

Query: 524 TTIVVSAT-PGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E        +  + II  + ++    +   VEI S  +Q  +    +
Sbjct: 245 QTLYWSATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILS-ESQKYNKLVNL 303

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G RIL+ + TK+  + +T  L         +H +    ER  ++ + + GK  +
Sbjct: 304 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPI 363

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  S    +  IGR  R        Y      
Sbjct: 364 MTATDVAARGLDVKDVKYVINYD-----FPGSLEDYVHRIGRTGRAGAKGTA-YTFFTAA 417

Query: 696 SIQLAID 702
           + + A D
Sbjct: 418 NARFAKD 424


>gi|223995669|ref|XP_002287508.1| atp-dependent RNA DEAD/DEAH box helicase [Thalassiosira pseudonana
           CCMP1335]
 gi|220976624|gb|EED94951.1| atp-dependent RNA DEAD/DEAH box helicase [Thalassiosira pseudonana
           CCMP1335]
          Length = 416

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 69/205 (33%), Gaps = 34/205 (16%)

Query: 520 CLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
             +    + SAT             P  + +     + +  I +    V+   ++     
Sbjct: 213 DKKHQICLFSATFPVTVKEFCQKFVPNPYSINLMDELTLRGITQFYAYVEERQKVH---- 268

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
                 + +    +    I +   +    E L + + E      Y+H++++   R  +  
Sbjct: 269 ----CLNTLFSKLEINQSI-IFCNSVNRVELLAKKVTELGYSCYYIHAKMQQANRNRVFH 323

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + R G    LV  +L   G+DI    +V   D     F ++  + +  IGR+ R  +  +
Sbjct: 324 EFRNGATRHLVTSDLFTRGIDIQSVNVVINFD-----FPKNAETYLHRIGRSGRFGHLGL 378

Query: 687 ILYADTITKSIQLAIDETTRRREKQ 711
            +   T      L       RR +Q
Sbjct: 379 AVNLITYDDRHAL-------RRVEQ 396


>gi|145580509|pdb|2P6N|A Chain A, Human Dead-Box Rna Helicase Ddx41, Helicase Domain
 gi|145580510|pdb|2P6N|B Chain B, Human Dead-Box Rna Helicase Ddx41, Helicase Domain
          Length = 191

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 11/120 (9%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K   + + EYL  + +    +H      ER + I   R GK DVLV  ++  +
Sbjct: 57  VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 116

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD P    V   D  +E       + +  IGR   + N+ +          I  A DE+
Sbjct: 117 GLDFPAIQHVINYDMPEE-----IENYVHRIGRTGCSGNTGIATTF------INKACDES 165


>gi|88859340|ref|ZP_01133980.1| hypothetical protein PTD2_20192 [Pseudoalteromonas tunicata D2]
 gi|88818357|gb|EAR28172.1| hypothetical protein PTD2_20192 [Pseudoalteromonas tunicata D2]
          Length = 413

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 69/195 (35%), Gaps = 29/195 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL------ 577
            T++ SAT         +G++              +E+    + V+ V  +I        
Sbjct: 180 QTLMFSATFSDEIKSLAKGMLNN---------PQLIEVSPVNSTVDTVKQKIYPVDKTRK 230

Query: 578 --------AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                      Q  ++L+   TK+ A+ L   L    I    +H+      R   +   +
Sbjct: 231 SEALIYLLKKHQWRQVLVFSRTKQGADSLVTQLNNAGINSASIHANRTQHARTHALNGFK 290

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+  VLV  ++   G+D+ +   V  LD             +  IGR  R   + + + 
Sbjct: 291 SGEIKVLVATDIASRGIDVNQLPCVINLD-----LPYVAEDYVHRIGRTGRAGTAGLAIS 345

Query: 690 ADTITKSIQ-LAIDE 703
             +I +S Q  AI+ 
Sbjct: 346 LFSIDESNQLQAIER 360


>gi|298369527|ref|ZP_06980844.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282084|gb|EFI23572.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 456

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 72/194 (37%), Gaps = 21/194 (10%)

Query: 521 LRPTTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSA-------RTQVED 570
            +  T++ SAT  P   +L +      E + +         VE           R  +E 
Sbjct: 182 KQRQTLLFSATFAPPIRKLAKDFMNAPEIVEVAAQNTTSSNVEQHIIAVDALKKRNLLER 241

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++ +      ++++   TK+  + +T  L  RN+  + +H +     R+E +   + 
Sbjct: 242 LIVDLQM-----NQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKE 296

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VLV  ++   GLDI E   V   +             +  IGR  R     V I  
Sbjct: 297 GSLRVLVATDVAARGLDIAELPFVINYE-----LPTQPEDYVHRIGRTGRAGADGVAISL 351

Query: 690 ADTITKSIQLAIDE 703
            D   + +  AI E
Sbjct: 352 MDKTEQKMFEAIKE 365


>gi|308080376|ref|NP_001183357.1| hypothetical protein LOC100501766 [Zea mays]
 gi|223949963|gb|ACN29065.1| unknown [Zea mays]
 gi|238010976|gb|ACR36523.1| unknown [Zea mays]
          Length = 483

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 8/136 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           V  E+     +G + ++   TKR A+ L+  +  R+ +   +H ++   +R   +   R 
Sbjct: 199 VLGELIKEHAKGGKCIVFTQTKRDADRLSHNMS-RSFQCEALHGDISQSQRERTLAGFRD 257

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+F++L+  ++   GLDIP   LV            S    +   GR  R       +  
Sbjct: 258 GRFNILIATDVAARGLDIPNVDLVI-----HFELPNSSELFVHRSGRTGRAGKKGTAIVM 312

Query: 691 DTITKSIQLAIDETTR 706
               +S   A+    R
Sbjct: 313 YNYDQS--RAVRVIER 326


>gi|254243526|ref|ZP_04936848.1| hypothetical protein PA2G_04344 [Pseudomonas aeruginosa 2192]
 gi|126196904|gb|EAZ60967.1| hypothetical protein PA2G_04344 [Pseudomonas aeruginosa 2192]
          Length = 639

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 11/193 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGII--VEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +   ++ SAT     ++    ++   E+I + P       +E R  R         +   
Sbjct: 184 KRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHL 243

Query: 579 AQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              G   ++L+   TK  A  L EYL +  +    +H       R + + D +     +L
Sbjct: 244 VTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRIL 303

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI +   V   +         +   +  IGR  R   S   I       +
Sbjct: 304 VATDIAARGLDIDQLPHVVNYE-----LPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEE 358

Query: 696 SIQLAIDETTRRR 708
            +  AI++ TR+R
Sbjct: 359 KLLKAIEKMTRQR 371


>gi|125623238|ref|YP_001031721.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492046|emb|CAL96974.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069989|gb|ADJ59389.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 551

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 99/250 (39%), Gaps = 11/250 (4%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT P   +    + +   + I+     +    ++    +T+  + +D +     
Sbjct: 176 QTLLFSATMPADIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLLD 235

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++   TKR  ++L   L  R  R   MH ++   +R+ ++RD + G  DVLV 
Sbjct: 236 VERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLD+     V   D       + + S +  IGR  R   S   + +        
Sbjct: 296 TDVAARGLDVSGVTHVYNYDIT-----QDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGY 350

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
             AI++ T +  K L+   K      S+   + +V+  +  E         D Q  SL +
Sbjct: 351 LRAIEKLTNKEMKGLKPPTKEEAYQASLSVAMDDVLRDLSDESGKAKLAKFDKQAASLLE 410

Query: 758 KKGKAHLKSL 767
           K     L +L
Sbjct: 411 KFDAKELVAL 420


>gi|22536941|ref|NP_687792.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae
           2603V/R]
 gi|22533794|gb|AAM99664.1|AE014227_8 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 2603V/R]
          Length = 528

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 93/261 (35%), Gaps = 23/261 (8%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT   P      +         I+ T L +  V+   +R    +  D    +  
Sbjct: 176 QTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLMD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ +IRD +    D+LV
Sbjct: 236 -VDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +  
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMG 349

Query: 698 QLAIDET-TRRREKQL-------EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
            L I E  T++R   +           K  +  + +     +       +      + + 
Sbjct: 350 YLTIIENLTKKRMTGMKPATASEAFQAKKKVALKRIARDFEDQELVSKFDKFKADALELA 409

Query: 750 AQQLSLSKKKGKAHLKSLRKQ 770
            Q    + ++   ++ SL  Q
Sbjct: 410 TQY---TPEELALYVLSLTVQ 427


>gi|23011993|ref|ZP_00052190.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 551

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 69/195 (35%), Gaps = 15/195 (7%)

Query: 522 RPTTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           R  ++  SAT            L     + V  +      VD  V I       + + + 
Sbjct: 218 RRQSLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQV-IFCHTGAKQALLNH 276

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +     +  R+L+   TK  A+ +   L +  I    +H      +R   +   R G   
Sbjct: 277 VL-RDPKIERVLVFTRTKHGADRVVRGLDKVGIVGAAIHGNKSQPQRERALAAFRDGSCR 335

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTI 693
           VLV  ++   G+D+     V   D           S +  IGR AR     + I + +  
Sbjct: 336 VLVATDIAARGIDVEGVTHVVNYD-----LPNVPESYVHRIGRTARAGAEGQAISFCNDE 390

Query: 694 TKSIQLAIDETTRRR 708
            ++    I+ TTR++
Sbjct: 391 ERAYLRDIERTTRQK 405


>gi|319763758|ref|YP_004127695.1| dead/deah box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|330823978|ref|YP_004387281.1| DEAD/DEAH box helicase domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|317118319|gb|ADV00808.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|329309350|gb|AEB83765.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           K601]
          Length = 480

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 88/250 (35%), Gaps = 29/250 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         ++  +  + Q+  +   +  R     + GF LP        R  
Sbjct: 136 TPGRLLD--------HIEAKNAVLNQVEYVVLDEADRM---LDIGF-LPDLQ-----RIL 178

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVY 572
            +   + TT++ SAT            + +    ++ RP       VE R    Q +D  
Sbjct: 179 SYLPKQRTTLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETAST-VEQRFFSVQDDDKR 237

Query: 573 DEINLA-AQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             I     ++GL+   + V +K     L   L    ++   +H +    ER++ +   + 
Sbjct: 238 RAIRHVLTERGLKQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALEAFKS 297

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G  D+LV  ++   GLDI +   V   D        +    +  IGR  R   S + +  
Sbjct: 298 GDVDLLVCTDVAARGLDIKDVPAVFNHDVPF-----NAEDYVHRIGRTGRAGASGLAVTL 352

Query: 691 DTITKSIQLA 700
                +  +A
Sbjct: 353 VGSGDARLVA 362


>gi|224006724|ref|XP_002292322.1| DEAD/DEAH box RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220971964|gb|EED90297.1| DEAD/DEAH box RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 663

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 72/190 (37%), Gaps = 17/190 (8%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL-----VDPPVEIRSARTQVEDVYDEI 575
            +  TI+ SAT      +  +  +V  ++   G      +D   E+   + Q   +   +
Sbjct: 406 HQRQTILYSATFPKKFQDFAKQTLVRPVVVNVGRAGAANLDVIQEVEYVK-QEAKIVYLL 464

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +    +++    K   +D+ EYL  + +    +H      ER E I   + GK DV
Sbjct: 465 ECLQKTAPPVVIFCEKKGDVDDIHEYLLLKGVEAVSIHGGKDQEERNEAIALYKAGKKDV 524

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++  +GLD  +   V   D   E       + +  IGR  R   + V         
Sbjct: 525 LVATDIAAKGLDFADIQHVINFDMPSE-----IENYVHRIGRTGRCGKTGVATTF----- 574

Query: 696 SIQLAIDETT 705
            I  + +ETT
Sbjct: 575 -INKSCEETT 583


>gi|148380762|ref|YP_001255303.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153932415|ref|YP_001385046.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936759|ref|YP_001388516.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           Hall]
 gi|148290246|emb|CAL84365.1| ATP-dependent RNA helicase (cold-shock dead-box protein)
           [Clostridium botulinum A str. ATCC 3502]
 gi|152928459|gb|ABS33959.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932673|gb|ABS38172.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. Hall]
          Length = 524

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 88/253 (34%), Gaps = 26/253 (10%)

Query: 523 PTTIVVSAT-PGSWE---LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
             T++ SAT P   +   L   +  +    I    L    +       + +D  + I   
Sbjct: 180 KQTMLFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRI 239

Query: 579 A--QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              ++    ++   TKR  ++L E +  +   V  MH ++   +RI  ++  +    + L
Sbjct: 240 IDSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFL 299

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+D+     V   D       +   S +  IGR  R           T  + 
Sbjct: 300 VATDVAARGIDVENISHVINYD-----IPQDAESYVHRIGRTGRADKEGTAYSLVTPREV 354

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
             +          +Q+E      I    + +K +  ++ IL +        I ++     
Sbjct: 355 SSI----------RQIER-----IIKSKITKKELPTLEDILEKKYDNLLNDITSKIEENK 399

Query: 757 KKKGKAHLKSLRK 769
            +K    +K+L +
Sbjct: 400 YEKFMPMVKTLEQ 412


>gi|113460849|ref|YP_718916.1| ATP-dependent RNA helicase [Haemophilus somnus 129PT]
 gi|112822892|gb|ABI24981.1| ATP-dependent RNA helicase CsdA [Haemophilus somnus 129PT]
          Length = 601

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 93/264 (35%), Gaps = 60/264 (22%)

Query: 523 PTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
             T + SAT P            +++I +        V+I+S +    D+         +
Sbjct: 181 HQTALFSATMPAP----------IKRITKRFMHNPQEVKIQSTQRTAPDITQSCWYV--R 228

Query: 582 GLR----------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           G R                 ++   TK    D+TE L +   R   ++ ++    R + +
Sbjct: 229 GFRKNEALLRFLEVEDFDAAIIFTRTKTATLDVTELLEKHGFRAAALNGDMTQQLREQTL 288

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             LR G  D+LV  ++   GLD+    LV   D           S +  IGR  R   + 
Sbjct: 289 DRLRNGSLDILVATDVAARGLDVERISLVVNYD-----IPLDAESYVHRIGRTGRAGRAG 343

Query: 686 -VILYADT--------ITKSIQLAIDETTR---------RRE---KQLEHNKKHNINPQS 724
             IL+ +         I + ++ AI+E            RR+    ++    +H+     
Sbjct: 344 RAILFVEPKERRLLGNIERLMKKAIEEVEMPNHLALQECRRKNFVAKITKQLEHHD---- 399

Query: 725 VKEKIMEVIDPILLEDAATTNISI 748
             E+   +++ +   D    +I+ 
Sbjct: 400 -LEQYRSLLEDLFTADQDQEDIAA 422


>gi|329769092|ref|ZP_08260513.1| hypothetical protein HMPREF0433_00277 [Gemella sanguinis M325]
 gi|328839438|gb|EGF89015.1| hypothetical protein HMPREF0433_00277 [Gemella sanguinis M325]
          Length = 486

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 100/268 (37%), Gaps = 15/268 (5%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSART------QVEDVYDEI 575
             T++ SAT     +E  +  + + ++I+     D   +I+   T      ++E +   +
Sbjct: 175 HQTLLFSATMPKTIMELSKDFMKDYKLIKTMSDEDLNPDIKEYATIARENEKLETLVGFL 234

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   Q     ++   TKR  ++L+  L  +      +H ++   +R+EI+R  +     +
Sbjct: 235 D--VQNPNLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQI 292

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   G+DI +   V   D       +   S    IGR  R   S V + + + I 
Sbjct: 293 LVATDVAARGIDISDVTHVYNFD-----IPQDTESYTHRIGRTGRAGKSGVAVTFLNPIE 347

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
                 I+ +   R K L    K  +          EV+  +        +++      S
Sbjct: 348 MPYLKDIENSRGERMKMLRPYTKEEVKKARHNRLFEEVVSELSDNHVELNSLANKLLAES 407

Query: 755 LSKKKGKAHLKSLRKQMHLAADNLNFEE 782
            ++K     L  L          L+FE+
Sbjct: 408 NAEKIITVLLNKLINDKKEVDVELSFEK 435


>gi|257440057|ref|ZP_05615812.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
           prausnitzii A2-165]
 gi|257197409|gb|EEU95693.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
           prausnitzii A2-165]
          Length = 641

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            +   ++ SAT    E+EQ    I+             V++    + V+ +   +    +
Sbjct: 177 RQRQNLMFSAT-MPKEIEQLAAGILHDPAF--------VKVDPVSSTVDRIQQSLYFVEK 227

Query: 581 QGLR----------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
              +                 L+   TK  A+ + + L ++ I    +H       R+  
Sbjct: 228 GNKKFLLPWLIKNLKPEVVNALVFSRTKHGADKIAKDLNKQGIPAAAIHGNKSQTARVTA 287

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + D + GK  VLV  ++   G+DI E   V   D           + +  IGR AR    
Sbjct: 288 LEDFKAGKTRVLVATDIAARGIDISELSHVFNYD-----LPEVPETYVHRIGRTARAGAD 342

Query: 685 KVILYADTITKSIQLAIDETTRRREK 710
              +      +   LA  E   RR+ 
Sbjct: 343 GTAVSFCAPEEKEYLAGIEKLNRRQI 368


>gi|237807827|ref|YP_002892267.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237500088|gb|ACQ92681.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 416

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 10/167 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIR--SARTQVEDVYDEINLA 578
            T+  SAT         + I+ +     +     +   +E R      Q +       + 
Sbjct: 179 QTLFFSATFNDDVFSLSKTILKQPKLIEVAERNAMAAKIEQRFYEVDNQRKAGLVAYLIG 238

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++   ++L+   TK+  ++L + L +  I    +H +     R   + + + G+   LV 
Sbjct: 239 SKNWQQVLIFTRTKQAVDELAKELEKDGISAAAVHGDKSQGARDRGLEEFKTGQVRALVA 298

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            ++   GLDI +   V   +        +    I  IGR  R   + 
Sbjct: 299 TDVAARGLDIQQLQYVINYE-----LPYNAEDYIHRIGRTGRAGQAG 340


>gi|149908489|ref|ZP_01897151.1| ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149808323|gb|EDM68260.1| ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 432

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 80/241 (33%), Gaps = 21/241 (8%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D        +SG+          + + GF      D R L  +     +   ++ SAT
Sbjct: 145 IIDFEKQKAMDLSGVEALVLDEADRMLDQGFI----KDIRYLMRKMPEPKQRLNLLFSAT 200

Query: 532 P--GSWELEQCQGIIVEQIIRP----TGLVDPPVEIRSARTQVEDVYDEINLAAQQG--L 583
                 EL        E++  P    TG          +    +D    +    ++    
Sbjct: 201 FTWDIRELAYQHMNEPEEVTVPAEKVTGSSITQELFHPSN---DDKMALLQTLIEEEWPE 257

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   E++  +L     RV  +  ++   +R  I+     GK D+LV  ++  
Sbjct: 258 RAIVFANTKHKCEEIWGHLAADKHRVGLLTGDIPQKKRNSILEQFTQGKLDILVATDVAA 317

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAID 702
            GL IP    V   D        +    +  IGR  R       I +A         AI+
Sbjct: 318 RGLHIPAVSHVFNYD-----LPDNCGDYVHRIGRTGRAGAEGHSISFACEKYIYNLPAIE 372

Query: 703 E 703
           E
Sbjct: 373 E 373


>gi|268318980|ref|YP_003292636.1| ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785]
 gi|262397355|emb|CAX66369.1| ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785]
          Length = 461

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 62/331 (18%), Positives = 126/331 (38%), Gaps = 41/331 (12%)

Query: 376 TIKIYANSHYVTPRPTLNTAM-KYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLE 434
              +    + +     +  A+      EL  +L ++ ++ R      L   I Y     +
Sbjct: 58  HAYLIPILNMIDENAPVTQAIVTAPSRELANQLYKVARQLRDASG--LNISIEYLGGGND 115

Query: 435 TTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL-------LFVDESHVTIPQISGMY 487
                +  E+ +  L    PG     L ++  +  +         +DE+ +T+       
Sbjct: 116 RNRQIEKAESRAPQLIIATPGR----LHDFASKKFINLENVKAFIIDEADMTLDMGFLSQ 171

Query: 488 RGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
             +   K    +    L +     P++ E +         +S  P    ++         
Sbjct: 172 MDEIMSK---LDKKAVLGAFSATIPVKLENFLRK-----YMSK-PEFIVIDN------PA 216

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           II PT + +  +++ S     +       L   Q    L+   TK+  ++LT+YL E+ +
Sbjct: 217 IIAPT-IQNDLIDVGSRD---KKSILYKLLTMGQPYLALVFANTKKTVDELTDYLEEQGL 272

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H  +   ER  IIR +R G++  +V  +L   G+D+P   LV   +  K+     
Sbjct: 273 KVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPGVNLVVNYEIPKD----- 327

Query: 668 KTSLIQTIGRAARN---VNSKVILYADTITK 695
              +I  IGR  RN    ++  ++Y D +++
Sbjct: 328 LEFVIHRIGRTGRNGLEGHAITLIYDDEMSQ 358


>gi|241760372|ref|ZP_04758467.1| dead/deah box helicase [Neisseria flavescens SK114]
 gi|241319250|gb|EER55728.1| dead/deah box helicase [Neisseria flavescens SK114]
          Length = 487

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 21/194 (10%)

Query: 521 LRPTTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSA-------RTQVED 570
            +  T++ SAT  P   +L Q      E + +      +  VE           R+ +E 
Sbjct: 206 KQRQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRSLLER 265

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++++      ++++   TK+  + +T  L  RNI  + +H +     R+E +   + 
Sbjct: 266 LIVDLHM-----NQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKE 320

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VLV  ++   GLDI E   V   +             +  IGR  R     V I  
Sbjct: 321 GTLRVLVATDVAARGLDIAELPFVINYE-----LPTQPEDYVHRIGRTGRAGADGVAISL 375

Query: 690 ADTITKSIQLAIDE 703
            D   + +  AI E
Sbjct: 376 MDKTEQKMFEAIKE 389


>gi|225733930|pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
           With An Edc3-Fdf Peptide
 gi|225733932|pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
           With An Edc3-Fdf Peptide
 gi|225733934|pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
           With An Edc3-Fdf Peptide
 gi|225733936|pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
           With An Edc3-Fdf Peptide
          Length = 193

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 63/171 (36%), Gaps = 15/171 (8%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E+   + + ++ + +    V    ++           + +    Q    I +   + +
Sbjct: 5   PYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFCNSSQ 55

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI    +
Sbjct: 56  RVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNV 115

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
           V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 116 VINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 161


>gi|221054171|ref|XP_002261833.1| DEAD/DEAH box helicase [Plasmodium knowlesi strain H]
 gi|193808293|emb|CAQ38996.1| DEAD/DEAH box helicase, putative [Plasmodium knowlesi strain H]
          Length = 906

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 78/213 (36%), Gaps = 30/213 (14%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
              TI+ +AT             +E+ +    +     + R  +  ++ V   +    +Q
Sbjct: 707 ARQTILFTAT-----FSDSLREDIEKFMGTPYVFLNITQKREVQNSIKQVVKYVPAKCKQ 761

Query: 582 GL----------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++ V  +     +   L     +V Y+H ++  + R ++ +  R  
Sbjct: 762 DELLKDLKPLQGQAIIFVELRSSINYIFSALKSNGYQVNYLHGKMSQVRRQDVFQQFRDR 821

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +F +LV  ++   GLD P+  LV   D   E         +  IGR  R   + + +   
Sbjct: 822 EFQILVATSIAARGLDFPDLELVINYDLPAE-----FEQYMHRIGRTGRIGKTGLAINY- 875

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNIN-PQ 723
               S +  ID       K ++H +KHN   PQ
Sbjct: 876 -FNSSNKKIID-------KLIDHLRKHNQTVPQ 900


>gi|167846330|ref|ZP_02471838.1| ATP-dependent RNA helicase [Burkholderia pseudomallei B7210]
          Length = 347

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I + Q I     +   V     R   + + D + 
Sbjct: 111 QTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLL 170

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                    ++   TK  A+ L   L +   +   +H ++    R   IR LR  +  VL
Sbjct: 171 RDVALDQ-AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVL 229

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 230 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 282

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 283 EQGALKRIER 292


>gi|152988184|ref|YP_001345923.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150963342|gb|ABR85367.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 635

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 11/193 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGII--VEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +   ++ SAT     ++    ++   E+I + P       +E R  R         +   
Sbjct: 184 KRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHL 243

Query: 579 AQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              G   ++L+   TK  A  L EYL +  +    +H       R + + D +     +L
Sbjct: 244 VTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRIL 303

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI +   V   +         +   +  IGR  R   S   I       +
Sbjct: 304 VATDIAARGLDIDQLPHVVNYE-----LPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEE 358

Query: 696 SIQLAIDETTRRR 708
            +  AI++ TR+R
Sbjct: 359 KLLKAIEKMTRQR 371


>gi|114569901|ref|YP_756581.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris
           MCS10]
 gi|114340363|gb|ABI65643.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
          Length = 452

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 78/207 (37%), Gaps = 20/207 (9%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-------PGSWELEQCQGIIVEQI 548
            + + GF  P+       +   +   +  T ++SAT            L+  + + V   
Sbjct: 160 QMLDLGF-FPAIR-----KIVSFLPNKRQTALLSATMPKPIRALAQEMLDDPKEVSVAPA 213

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
            RP   ++  V +    ++ + + + ++  A    R ++   TK  A+ +  +L +  ++
Sbjct: 214 SRPIERIEQSVVLLPKESKKDLLLELMSDRAV--ERAIVFSRTKHGADKINRHLVDYGLK 271

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H      +RI+ +   + G   +LV  ++   G+D+     V   D          
Sbjct: 272 SAAIHGNKSQAQRIKALDGFKTGAVKILVATDIAARGIDVDNVSHVVNHD-----LPNLP 326

Query: 669 TSLIQTIGRAARNVNSKVILYADTITK 695
            S +  IGR AR   S V +      +
Sbjct: 327 ESYVHRIGRTARAGKSGVAVSMCEPGE 353


>gi|77409647|ref|ZP_00786319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
 gi|77171747|gb|EAO74944.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
 gi|319744779|gb|EFV97119.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813]
          Length = 528

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 93/263 (35%), Gaps = 23/263 (8%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEI 575
              T++ SAT   P      +         I+ T L +  V+   +R    +  D    +
Sbjct: 174 ARQTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRL 233

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ +IRD +    D+
Sbjct: 234 MD-VDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDI 292

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +
Sbjct: 293 LVATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKSGQSITFVSPNE 347

Query: 696 SIQLAIDET-TRRREKQL-------EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
              L I E  T++R   +           K  +  + +     +       +      + 
Sbjct: 348 MGYLTIIENLTKKRMTGMKPATASEAFQAKKKVALKRIARDFEDQELVSKFDKFKADALE 407

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQ 770
           +  Q    + ++   ++ SL  Q
Sbjct: 408 LATQY---TPEELALYVLSLTVQ 427


>gi|323355122|gb|EGA86952.1| Dbp3p [Saccharomyces cerevisiae VL3]
          Length = 537

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 86/244 (35%), Gaps = 33/244 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         + E  V + Q++ +   +  R     E GF      ++      
Sbjct: 238 TPGRLLD--------LLQEGSVDLSQVNYLVLDEADRM---LEKGFE-----EDIKNIIR 281

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---------IRPTGLVDPPVEIRSARTQ 567
           E +  +  T++ +AT      E     +   I         +     +   VE+   R +
Sbjct: 282 ETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGK 341

Query: 568 VEDVYDEINLA---AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
              + + +       ++  ++L+  L K+ A  +   L      V  +H ++   +R + 
Sbjct: 342 ERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQA 401

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + + GK ++L+  ++   GLDIP    V  L      F  +    +  IGR  R   +
Sbjct: 402 LNEFKSGKSNLLLATDVAARGLDIPNVKTVINL-----TFPLTVEDYVHRIGRTGRAGQT 456

Query: 685 KVIL 688
               
Sbjct: 457 GTAH 460


>gi|294625538|ref|ZP_06704165.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294663958|ref|ZP_06729380.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292600152|gb|EFF44262.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292606274|gb|EFF49503.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 460

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 29/226 (12%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC---------MDNRPLRF-EEWNCL 521
            +D        +SG+          + + GF LPS           D + L F   +   
Sbjct: 136 LIDHIERRSVDLSGIEVLILDEADRMLDMGF-LPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLAA 579
                          LE  +  +  Q+  P+  V   +   +       +       LA 
Sbjct: 195 IKQLA----------LEFMRNPMQIQVT-PSNTVAESITHRVHPVDGARKRDLLLHLLAQ 243

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               + L+   TK  ++ L  +L +  I+   +H      +R+  + D + G+  VLV  
Sbjct: 244 DSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVAT 303

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           ++   G+DI +   V   D             +  IGR  RN ++ 
Sbjct: 304 DIAARGIDIDQLPKVINYDLPMV-----AEDYVHRIGRTGRNGSTG 344


>gi|285019640|ref|YP_003377351.1| ATP-dependent RNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283474858|emb|CBA17357.1| putative atp-dependent rna helicase protein [Xanthomonas
           albilineans]
          Length = 570

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 76/242 (31%), Gaps = 25/242 (10%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+              +  +             + + GF      D R L   
Sbjct: 141 TPGRLIDYV----------KQHKVVSLHACEICVLDEADRMFDLGFI----KDIRFLLRR 186

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIRSA--RTQVEDV 571
                   T++ SAT     LE     + E    ++    +    V  R      + +  
Sbjct: 187 MPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPADEEKLT 246

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                L+  +G R ++ V TK   E +   L     RV  +  +V   +R  ++   + G
Sbjct: 247 LLLGLLSRSEGARTMVFVNTKAFVERVARALERNGYRVGVLSGDVPQKKRETLLNRFQKG 306

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYA 690
           + ++LV  ++   GL I     V   D             +  IGR AR       I +A
Sbjct: 307 QLEILVVTDVAARGLHIDGVKYVYNYD-----LPFDAEDYVHRIGRTARLGEEGDAISFA 361

Query: 691 DT 692
             
Sbjct: 362 CE 363


>gi|218134053|ref|ZP_03462857.1| hypothetical protein BACPEC_01943 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991428|gb|EEC57434.1| hypothetical protein BACPEC_01943 [Bacteroides pectinophilus ATCC
           43243]
          Length = 559

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 72/177 (40%), Gaps = 16/177 (9%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVE--QIIRPTGLVDPP----VEIRSARTQVEDVYDEI 575
            T++ SAT      ++ +      E  +++R    V+       E+RS     +++   +
Sbjct: 202 QTVMFSATMPKAIMDIARTFQNDAEVIKVVRKELTVENIEQYYFEVRSKNK--DEILSRL 259

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L + +   TK+  +DL   L  R      +H ++K  +R  ++ D R GK ++
Sbjct: 260 IDIYNPKLSV-VFCNTKKQVDDLISELKGRGYFADGIHGDMKQAQRDRVMNDFRKGKTEI 318

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           L+  ++   G+D+ +  +V   D       + +   +  IGR  R   + +     T
Sbjct: 319 LIATDVAARGIDVDDVDIVFNYD-----LPQDEEYYVHRIGRTGRAGRAGLAFSFVT 370


>gi|297197315|ref|ZP_06914712.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|197714892|gb|EDY58926.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 469

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 59/158 (37%), Gaps = 18/158 (11%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D Y      A +  R+LL + TK   + LT +L    +    +HS     +R   +   +
Sbjct: 253 DRYAVTTEIAARDGRVLLFLDTKHGVDQLTRHLRGSGVHAAALHSGKSQPQRTRTLAQFK 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+  VLV  N+   GL + +  LV  +D             +   GR AR   S  ++ 
Sbjct: 313 NGQVTVLVATNVAARGLHVDDLDLVVNVDP-----PTDAKDYLHRAGRTARAGESGRVVT 367

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
                +       ET+R     +    +  I P +V +
Sbjct: 368 LVLSGQR-----RETSR----LMA---EAGIEP-TVTK 392


>gi|189242416|ref|XP_001811064.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
           [Tribolium castaneum]
          Length = 1142

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            +I++ V TK+  +D+T+ +         +H +    ER  ++ + R GK  +LV  ++ 
Sbjct: 798 NKIIVFVETKKKVDDITKCIRREGYAAISIHGDKSQPERDYVLSEFRTGKSSILVATDVA 857

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
             GLD+ +   V   D     +  S    +  IGR  R   +    YA   + + + A D
Sbjct: 858 ARGLDVEDVKYVINFD-----YPNSSEDYVHRIGRTGRCQQAGTA-YAFFTSNNQRQAKD 911


>gi|149038672|gb|EDL92961.1| rCG22084, isoform CRA_a [Rattus norvegicus]
 gi|149038673|gb|EDL92962.1| rCG22084, isoform CRA_a [Rattus norvegicus]
          Length = 398

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 39/256 (15%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 26  PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 85

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 86  DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 144

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 145 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICVCFYQ 199

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 200 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 246

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 247 AVDFFRPSAQRLIEEK 262


>gi|21230065|ref|NP_635982.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769942|ref|YP_244704.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188993155|ref|YP_001905165.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21111589|gb|AAM39906.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575274|gb|AAY50684.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167734915|emb|CAP53127.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 462

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 29/226 (12%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC---------MDNRPLRF-EEWNCL 521
            +D        +SG+          + + GF LPS           D + L F   +   
Sbjct: 136 LIDHIERRSVDLSGIEVLILDEADRMLDMGF-LPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLAA 579
                          LE  +  +  Q+  P+  V   +   +       +       LA 
Sbjct: 195 IKQLA----------LEFMRNPMQIQVT-PSNTVAESITHRVHPVDGARKRDLLLHLLAQ 243

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               + L+   TK  ++ L  +L +  I+   +H      +R+  + D + G+  VLV  
Sbjct: 244 DSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVAT 303

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           ++   G+DI +   V   D             +  IGR  RN ++ 
Sbjct: 304 DIAARGIDIDQLPKVINYDLPMV-----AEDYVHRIGRTGRNGSTG 344


>gi|121602645|ref|YP_988916.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120614822|gb|ABM45423.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain
           protein [Bartonella bacilliformis KC583]
          Length = 462

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/316 (15%), Positives = 105/316 (33%), Gaps = 41/316 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++    +LL +        +I  +   D      + + GF  P     R  +  
Sbjct: 134 TPGRLLDHFERGTLLLM------GVEILVIDEADR-----MLDMGFI-PDI--ERICKLT 179

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGI----IVEQIIRPTGLVDPPVE--IRSARTQVED 570
            +      T+  SAT     ++  +      +  +I + +       +  ++S       
Sbjct: 180 PF---TRQTLFFSATMAPEIIKLTEQFLHSPVCVEITKESSTARTITQRLVKSGSKAWHK 236

Query: 571 ---VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
              +   I+   ++    ++    K+   +L   L + N  V  +H ++    R+  + D
Sbjct: 237 RAVLRKLIHDENKELKNAIVFCNRKKDISELFRSLVKYNFSVGVLHGDMDQHSRMNTLAD 296

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KV 686
            +  K  +LV  ++   GLDIP+   V   D             I  IGR  R   S K 
Sbjct: 297 FKENKLTLLVASDVAARGLDIPDVSHVFNYDV-----PTHAEDYIHRIGRTGRAKRSGKA 351

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKH--NINPQSVKEKIMEVIDPILLEDAATT 744
                   +    AI++ ++        N +         + +++ ++        +   
Sbjct: 352 FTIVTKNDQKYISAIEKISK-------ENIEWLDGDLSTLINDEVNDISLKTKSTKSPKK 404

Query: 745 NISIDAQQLSLSKKKG 760
           NI  +A ++     + 
Sbjct: 405 NIQKNAIKMPKDNAEI 420


>gi|84515959|ref|ZP_01003320.1| DEAD/DEAH box helicase [Loktanella vestfoldensis SKA53]
 gi|84510401|gb|EAQ06857.1| DEAD/DEAH box helicase [Loktanella vestfoldensis SKA53]
          Length = 447

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 19/193 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPV--EIRSART--QVEDVYDEIN 576
            T++ SAT      E     + + +   + P G     +   +       + + + D ++
Sbjct: 182 QTMMFSATMPKLMSELADAFLTDAVRVQVNPPGQAVKKIAQSVHFVAQAAKTDLLVDLLD 241

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               +    L+   TK   E L + L  +      +H      +R   I   + GK  VL
Sbjct: 242 --KHRDELALVFGRTKHGCEKLYKTLEAKGFAAASIHGNKSQGQRERAIEAFKAGKVRVL 299

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK- 695
           V  ++   G+DIP    V   D           + +  IGR AR       +      + 
Sbjct: 300 VATDVAARGIDIPGVRHVYNYD-----LPNVAENYVHRIGRTARAGADGSAIALVAPDEM 354

Query: 696 ----SIQLAIDET 704
                I+ A+ ET
Sbjct: 355 IELQDIEKAMKET 367


>gi|317181556|dbj|BAJ59340.1| ATP-dependent RNA helicase [Helicobacter pylori F57]
          Length = 492

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 65/355 (18%), Positives = 130/355 (36%), Gaps = 59/355 (16%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++        +  H  +P++  +   D      + + GF     +D+    F+
Sbjct: 144 TPGRLLDHLKN------ERIHKFVPKVVVLDESD-----EMLDMGF-----LDDIEEIFD 187

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVY 572
                    ++ SAT     +++    I+E  I+    P+ + +  +  R       +  
Sbjct: 188 YLPSEA-QILLFSAT-MPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERA 245

Query: 573 DEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + I      Q   + ++   TK+ A++L ++L  +N +   +H ++   +R   I   + 
Sbjct: 246 EAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              DVLV  ++   GLDI     V            +  S I  IGR  R     + +  
Sbjct: 306 NDADVLVATDVASRGLDISGVSHVFNYH-----LPLNTESYIHRIGRTGRAGKKGMAITL 360

Query: 691 DTITK-----SIQLAID---------ETTRRREKQLEHNKK--HNINPQSVKEKIMEVID 734
            T  +      +Q  ID              +  +  HN K    I   S+ E++ E+ +
Sbjct: 361 VTPLEYKELLRMQKEIDSKIELFEIPTINENQIIKTLHNAKVSEGII--SLYEQLTEIFE 418

Query: 735 PILLE------DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEA 783
           P  L          T+ I ++ Q++   +   +   K+  K+MH        E+A
Sbjct: 419 PSQLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKVPKTPNKKMHQH------EQA 467


>gi|315445551|ref|YP_004078430.1| DEAD/DEAH box helicase [Mycobacterium sp. Spyr1]
 gi|315263854|gb|ADU00596.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
          Length = 505

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   I  A  +G   ++   TKR A+ + + L ER  RV  +H ++    R + ++  R
Sbjct: 250 EMVARILQAEGRG-ATMIFTRTKRTAQKVADELGERGFRVGAVHGDLGQSAREKALKGFR 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G  DVLV  ++   G+DI +   V             + + +  IGR  R   + + + 
Sbjct: 309 NGDVDVLVATDVAARGIDIDDITHVINF-----QIPEDEQAYVHRIGRTGRAGKTGIAVT 363

Query: 689 YADTITKSIQLAID 702
             D         ID
Sbjct: 364 LVDWDELPRWSMID 377


>gi|307181904|gb|EFN69344.1| ATP-dependent RNA helicase vasa [Camponotus floridanus]
          Length = 355

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 83/243 (34%), Gaps = 36/243 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++I            + +  +      +  R     + GF LP        +  
Sbjct: 133 TPGRLLDFIGRG--------RIKLSSLRFFVLDEADRM---LDMGF-LPDIE-----KIV 175

Query: 517 EWNCLRP----TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV-----DPPVEIRSARTQ 567
           +   + P     T++ SAT  S   E     +   +    G+V     D       A  Q
Sbjct: 176 DHETMVPAEERQTLMFSATFPSEIQELAGRFLKNYLFLAVGIVGGACADVQQNFYQASGQ 235

Query: 568 VED---VYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            E    + + ++  +Q G     L+ V  KR  + +  +L E N     +H +    ER 
Sbjct: 236 PEKRKLLKELLDKQSQMGSIEGTLVFVEQKRHTDFIAAFLSESNFPTTSIHGDRLQRERE 295

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           E + D + GK  +LV   +   GLDI     V   D  K     +    +  IGR  R  
Sbjct: 296 EALSDFKRGKMSILVATAVAARGLDIKNVAHVINFDLPK-----TIDEYVHRIGRTGRVG 350

Query: 683 NSK 685
           N  
Sbjct: 351 NRG 353


>gi|91787583|ref|YP_548535.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91696808|gb|ABE43637.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 624

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 72/215 (33%), Gaps = 29/215 (13%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ- 580
           R  T++ SAT     ++    ++          +D P E  ++ TQ     D +    + 
Sbjct: 274 RKQTMMFSATFAPRIMQLATRVMR---TPQRVEIDSPHEKHTSITQSLLWADNMTHKRKL 330

Query: 581 --QGLR------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               LR       ++   T+   + L   L +       +H  +    R   +   R G+
Sbjct: 331 LDHHLRDTTMNQSIVFACTQVECDGLANDLVQEGFSAVALHGALGQGLRNRRLMAFRDGR 390

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             VLV  ++   GLD+P    V        G        +  IGR  R       +    
Sbjct: 391 VQVLVATDVAARGLDVPTITHVINY-----GLPMKAEDYVHRIGRTGRAGREGQAI---- 441

Query: 693 ITKSIQLAIDETTRRREKQ-LEHNKKHNINPQSVK 726
                   I E   RR+ Q +EH  + N+ P  + 
Sbjct: 442 -------TIAEFRDRRKIQDIEHYMQQNLKPSVIA 469


>gi|145225254|ref|YP_001135932.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           gilvum PYR-GCK]
 gi|145217740|gb|ABP47144.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum
           PYR-GCK]
          Length = 505

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   I  A  +G   ++   TKR A+ + + L ER  RV  +H ++    R + ++  R
Sbjct: 250 EMVARILQAEGRG-ATMIFTRTKRTAQKVADELGERGFRVGAVHGDLGQSAREKALKGFR 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G  DVLV  ++   G+DI +   V             + + +  IGR  R   + + + 
Sbjct: 309 NGDVDVLVATDVAARGIDIDDITHVINF-----QIPEDEQAYVHRIGRTGRAGKTGIAVT 363

Query: 689 YADTITKSIQLAID 702
             D         ID
Sbjct: 364 LVDWDELPRWSMID 377


>gi|223043911|ref|ZP_03613952.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus capitis SK14]
 gi|314934151|ref|ZP_07841512.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
 gi|222442626|gb|EEE48730.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus capitis SK14]
 gi|313653056|gb|EFS16817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
          Length = 511

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + D+LV  ++   
Sbjct: 243 AIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAAR 302

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           GLDI     V   D       +   S    IGR  R     + + + + I       I++
Sbjct: 303 GLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIED 357

Query: 704 TTRRR 708
              RR
Sbjct: 358 VNGRR 362


>gi|254521627|ref|ZP_05133682.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
 gi|219719218|gb|EED37743.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
          Length = 648

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 75/187 (40%), Gaps = 10/187 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L   L  R +    ++ +++  +R   I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+A    K +   I+ 
Sbjct: 311 GLDVERISHVLNYD-----IPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIER 365

Query: 704 TTRRREKQLEHNKKHNINPQSVKE---KIMEVIDPILLEDAATTNISIDAQQLSLSKKKG 760
            TR+  ++++      +N   + +   +I E +    L D     +     + ++   + 
Sbjct: 366 ATRQPIEEMQLPSVEAVNDTRINKFTTRITETLGAGGL-DFYRQLLERFENEQNVPAIEV 424

Query: 761 KAHLKSL 767
            A L  +
Sbjct: 425 AAALAKM 431


>gi|148907401|gb|ABR16834.1| unknown [Picea sitchensis]
          Length = 286

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 16/189 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSARTQVEDVYDEI 575
              V SAT  P + E+ +       +I+         G+    V +     +++ + D  
Sbjct: 88  QVGVFSATMPPEALEITRKFMNNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLY 147

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              A    + ++ + T+R  + LT+ +  R+  V   H ++    R  I+R+ R G   V
Sbjct: 148 ETLAIT--QSVIFINTRRKVDMLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRV 205

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           L+  +LL  G+D+ +  LV   D           + +  IGR+ R     V I +     
Sbjct: 206 LITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRKGVAINFITKDD 260

Query: 695 KSIQLAIDE 703
           + +   I  
Sbjct: 261 ERMLQDIQR 269


>gi|170091070|ref|XP_001876757.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648250|gb|EDR12493.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 661

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 76/222 (34%), Gaps = 19/222 (8%)

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           ++  VE+R   T+   + + +     +    R L+ V  +  A++L   L  +      +
Sbjct: 301 IEQIVEVRPEDTKFNRLLEILGQMYNEDPECRTLVFVDRQEAADNLLRELMRKGYLCMSL 360

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H     ++R   I D + G   +++  ++   GLD+ +  LV   DA            +
Sbjct: 361 HGGKDQVDRDSTIADFKSGVVPIVIATSVAARGLDVKQLKLVINYDA-----PNHMEDYV 415

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
              GR  R  N    +   T  +  + ++D     R  +   N        ++ + + E+
Sbjct: 416 HRAGRTGRAGNKGTCVTFITPEQE-RYSVDI---YRAVK-ASNA-------TIPKDLEEL 463

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLA 774
            +  L +       +  +        +      +  K    A
Sbjct: 464 ANGFLDKLKTGKAQAAGSGFGGKGLDRLDKERDAREKAERKA 505


>gi|160946735|ref|ZP_02093938.1| hypothetical protein PEPMIC_00693 [Parvimonas micra ATCC 33270]
 gi|158447119|gb|EDP24114.1| hypothetical protein PEPMIC_00693 [Parvimonas micra ATCC 33270]
          Length = 580

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 5/112 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TK+M +DLT  L  R      +H ++K ++R  ++   R    D+LV  ++   
Sbjct: 244 TVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNSTIDILVATDVAAR 303

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           G+D+ +  LV   D       +     +  IGR AR       +   +  + 
Sbjct: 304 GIDVDDVDLVINYD-----MPQDVEYYVHRIGRTARAGREGTAISFVSPREM 350


>gi|15595625|ref|NP_249119.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|9946285|gb|AAG03817.1|AE004480_1 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
          Length = 639

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 11/193 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGII--VEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +   ++ SAT     ++    ++   E+I + P       +E R  R         +   
Sbjct: 184 KRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHL 243

Query: 579 AQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              G   ++L+   TK  A  L EYL +  +    +H       R + + D +     +L
Sbjct: 244 VTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRIL 303

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI +   V   +         +   +  IGR  R   S   I       +
Sbjct: 304 VATDIAARGLDIDQLPHVVNYE-----LPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEE 358

Query: 696 SIQLAIDETTRRR 708
            +  AI++ TR+R
Sbjct: 359 KLLKAIEKMTRQR 371


>gi|226183|prf||1413329A gene vasa
          Length = 660

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 82/253 (32%), Gaps = 31/253 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++        VD + +T      +   +  R     + GF      D R +   
Sbjct: 375 TPGRLLDF--------VDRTFITFEDTRFVVLDEADRM---LDMGF----SEDMRRIMTH 419

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQII-------RPTGLVDPPVEIRSARTQVE 569
                   T++ SAT            +  + +       R + +     E+     + +
Sbjct: 420 VTMRPEHQTLMFSATFPEEIQRMAGEFLKLRFVAIGIVGGRCSDVKQTIYEVNKYAKRSK 479

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                I + ++Q    ++ V TKR A+ L  +L E+      +  +    +R + +RD +
Sbjct: 480 ----LIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIRGDRLQSQREQALRDFK 535

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VL+  ++   GLDI     V   D             +  IGR     N      
Sbjct: 536 NGSMKVLIATSVASRGLDIKNIKHVINYD-----MPSKIDDYVHRIGRTGCVGNWGRAQS 590

Query: 690 ADTITKSIQLAID 702
                K   +A D
Sbjct: 591 FFDPEKDRAIAAD 603


>gi|21223535|ref|NP_629314.1| helicase [Streptomyces coelicolor A3(2)]
 gi|9714451|emb|CAC01367.1| putative helicase [Streptomyces coelicolor A3(2)]
          Length = 879

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 66/188 (35%), Gaps = 24/188 (12%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
                   +SAT    E         + I R   +  P             +   I  A 
Sbjct: 178 RYMSQPTHISATSPDDEGA-TVANTKQFIYRAHNMDKPE------------MVARILQAD 224

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +GL  ++   TKR A DL + L +R      +H ++    R + +R  R GK DVLV  
Sbjct: 225 GRGL-AMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCT 283

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS-- 696
           ++   G+D+     V    + +E     + + +  IGR  R       I   D       
Sbjct: 284 DVAARGIDVEGVTHVINYQSPEE-----EKTYLHRIGRTGRAGAKGTAITLVDWDDIPRW 338

Query: 697 --IQLAID 702
             I  A+D
Sbjct: 339 QLINKALD 346


>gi|326429375|gb|EGD74945.1| DEAD box polypeptide 47 isoform 1 [Salpingoeca sp. ATCC 50818]
          Length = 711

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 72/195 (36%), Gaps = 17/195 (8%)

Query: 522 RPTTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVEDVY 572
           +P  I+ SAT           +  E      V + +  T      + +R   + +   + 
Sbjct: 296 KPQMILFSATMPPFIKSTLTKYMPEHKVVDTVGKEMNRTSTGVQHLALRCPWQARNTVIA 355

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TKR A +L          V+ +H ++   +R   ++  R GK
Sbjct: 356 DVVQVYSGAHGRTMIFTQTKRDANELA-LNDTLKQEVQVLHGDIAQKQRELSLQCFRDGK 414

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
              LV  ++   G+DIPE  LV   +  K+       S I   GR  R       +    
Sbjct: 415 VRCLVATDVAARGIDIPEVDLVVQCEPPKDV-----ESYIHRSGRTGRAGRKGTCICFYK 469

Query: 693 ITKSIQLAIDETTRR 707
             +  +  + E  RR
Sbjct: 470 PNQ--EQQLREVERR 482


>gi|302557418|ref|ZP_07309760.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302475036|gb|EFL38129.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 485

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 17/160 (10%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q  D +      A +  R+++ + TK   + LT  L    +R   +H      +R   + 
Sbjct: 281 QEADKHAATTEIAARDGRVIMFLDTKHAVDRLTRNLLNSGVRAAALHGGKSQPQRTRTLA 340

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             + G   VLV  N+   G+ + +  LV  +D             +   GR AR   S  
Sbjct: 341 QFKTGHVTVLVATNVAARGIHVDDLDLVVNVDP-----PTDHKDYLHRAGRTARAGESGS 395

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
           ++   T  +          RR   +L       I P++ +
Sbjct: 396 VVTLVTPNQ----------RRGMIRLM--SDAGIRPRTTQ 423


>gi|255657870|ref|ZP_05403279.1| ATP-dependent RNA helicase DeaD [Mitsuokella multacida DSM 20544]
 gi|260850060|gb|EEX70067.1| ATP-dependent RNA helicase DeaD [Mitsuokella multacida DSM 20544]
          Length = 441

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 104/278 (37%), Gaps = 24/278 (8%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYR-GDFHRKATLAEYGFRLPSCMDNRPLRF 515
            P  L +++   ++     + V + +   M R G      TL E      +  D + + F
Sbjct: 127 TPGRLLDHLRRQTIDLSQVNKVVLDEADEMMRLGFIEDVETLLE-----ATAADRQLMLF 181

Query: 516 EEWNCLRPTTIVVSATPGSWELE-QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
                 R   +          LE + + + ++ I       D  +      T+++ + + 
Sbjct: 182 SATMPDRVKALSARYMTAPQNLEIKSEHVTLDAI-------DQVIIDTREETKIDKLCEI 234

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           IN   +Q    ++   TK+ A  +T  L  R   V  +H ++  ++R  +++  R  +  
Sbjct: 235 INQ--EQPYLAMVFCHTKQRAHMVTMALAARGYLVDELHGDLSQVQRTLVLKRFRKAELQ 292

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTI 693
           +L   ++   GLDI     V   D           S I  IGR  R     K I + +  
Sbjct: 293 ILCATDIAARGLDIEGVTHVFNYD-----IPHDAESYIHRIGRTGRAGERGKAITFVNAR 347

Query: 694 TKSIQLAID--ETTRRREKQLEHNKKHNINPQSVKEKI 729
              +   I+     R R+++ E  ++H    + + ++I
Sbjct: 348 QYDLLRRIEGGIKDRIRKQRSERGRRHKEKQEQILKEI 385


>gi|195446424|ref|XP_002070774.1| GK12237 [Drosophila willistoni]
 gi|194166859|gb|EDW81760.1| GK12237 [Drosophila willistoni]
          Length = 478

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 75/190 (39%), Gaps = 13/190 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII----RPTGLVDPP----VEIRSARTQVEDVYDEI 575
             +  SAT     ++  + I+ +  I    R    +D      V+ ++   +  +    I
Sbjct: 268 QMLFFSATYNKEVMDFARLIVTDPTIIRLMREEESLDNIKQYYVKCKNEDGK-YNAIQNI 326

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G   ++   T++ A  L   + +    V  +  ++   +R+ ++   R G   V
Sbjct: 327 YGCISIGQ-AIIFCHTRKTASWLASKMSKDGHSVAVLSGDLTVEQRLAVLDRFRSGLEKV 385

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKT-SLIQTIGRAARNVNSKVILYADTIT 694
           L+  N+L  G+DI +  +V   D   +   ++   + +  IGR  R   S + +      
Sbjct: 386 LITTNVLSRGIDIEQVTIVVNFDLPIDSRGKADCETYLHRIGRTGRFGKSGIAINLVDSE 445

Query: 695 KSIQ--LAID 702
           KS++   AI+
Sbjct: 446 KSMEVCAAIE 455


>gi|170717335|ref|YP_001784445.1| DEAD/DEAH box helicase domain-containing protein [Haemophilus
           somnus 2336]
 gi|168825464|gb|ACA30835.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336]
          Length = 601

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 93/264 (35%), Gaps = 60/264 (22%)

Query: 523 PTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
             T + SAT P            +++I +        V+I+S +    D+         +
Sbjct: 181 HQTALFSATMPAP----------IKRITKRFMHNPQEVKIQSTQRTAPDITQSCWYV--R 228

Query: 582 GLR----------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           G R                 ++   TK    D+TE L +   R   ++ ++    R + +
Sbjct: 229 GFRKNEALLRFLEVEDFDAAIIFTRTKTATLDVTELLEKHGFRAAALNGDMTQQLREQTL 288

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             LR G  D+LV  ++   GLD+    LV   D           S +  IGR  R   + 
Sbjct: 289 DRLRNGSLDILVATDVAARGLDVERISLVVNYD-----IPLDAESYVHRIGRTGRAGRAG 343

Query: 686 -VILYADT--------ITKSIQLAIDETTR---------RRE---KQLEHNKKHNINPQS 724
             IL+ +         I + ++ AI+E            RR+    ++    +H+     
Sbjct: 344 RAILFVEPKERRLLGNIERLMKKAIEEVEMPNHLALQECRRKNFVAKITKQLEHHD---- 399

Query: 725 VKEKIMEVIDPILLEDAATTNISI 748
             E+   +++ +   D    +I+ 
Sbjct: 400 -LEQYRSLLEDLFTADQDQEDIAA 422


>gi|332184003|gb|AEE26257.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida 3523]
          Length = 445

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 103/326 (31%), Gaps = 41/326 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   +++L            ++     +  R     + GF       N   +  
Sbjct: 130 TPGRLLDLYSQNAL--------KFDSLNTFVLDEADRM---LDMGFI------NDLKKIH 172

Query: 517 EWNCLRPTTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           +    +  T++ SAT            L   Q +  + +      +   +      T++ 
Sbjct: 173 KLLPKKLQTLMFSATFSPEIKNLANDFLNNPQSVSADVVNTTVKKITQKIYTLDKSTKIN 232

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   I    Q   ++L+   TK  A  ++E L    I    +H       R + + D +
Sbjct: 233 ALISLIKD--QDLHQVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFK 290

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
             + +VLV  ++   G+DI +   V  LD             +  IGR  R       I 
Sbjct: 291 SKEINVLVATDIAARGIDIAQLPCVINLD-----LPNVAEDYVHRIGRTGRAGQDGLAIS 345

Query: 689 YADTITKSIQLAIDETTRR---REKQLEHNKKHN--INP---QSVKEKIMEVIDPILLED 740
                       I+        RE+       HN  I     ++  +KI EV   I  + 
Sbjct: 346 LVSADEVESLSNIEHLIGHLLPREELEGFEATHNVPITSMSRKTKAKKIDEV-KIIAAKR 404

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS 766
           A   N S + ++ S         ++ 
Sbjct: 405 ANKNNKSTNQKKSSNHNSDFAKKIRQ 430


>gi|289665420|ref|ZP_06487001.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 460

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 29/226 (12%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC---------MDNRPLRF-EEWNCL 521
            +D        +SG+          + + GF LPS           D + L F   +   
Sbjct: 136 LIDHIERRSVDLSGIEVLILDEADRMLDMGF-LPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLAA 579
                          LE  +  +  Q+  P+  V   +   +       +       LA 
Sbjct: 195 IKQLA----------LEFMRNPMQIQVT-PSNTVAESITHRVHPVDGARKRDLLLHLLAQ 243

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               + L+   TK  ++ L  +L +  I+   +H      +R+  + D + G+  VLV  
Sbjct: 244 DSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVAT 303

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           ++   G+DI +   V   D             +  IGR  RN ++ 
Sbjct: 304 DIAARGIDIDQLPKVINYDLPMV-----AEDYVHRIGRTGRNGSTG 344


>gi|261491682|ref|ZP_05988263.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494445|ref|ZP_05990931.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309829|gb|EEY11046.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312635|gb|EEY13757.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 411

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   E++ +YL     R+  +  ++   +R+ ++ +   G  D+LV  ++  
Sbjct: 255 RCMIFANTKHKCEEIWQYLAADGHRIGMLTGDIPQKKRLSLLDNFTKGNLDILVVTDVAA 314

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAID 702
            GL IP+   V   D         K   +  IGR  R   S   I +A         AI+
Sbjct: 315 RGLHIPDVTHVFNYD-----LPDDKEDYVHRIGRTGRAGESGHSISFACERYAVNLPAIE 369

Query: 703 E 703
           E
Sbjct: 370 E 370


>gi|256825728|ref|YP_003149688.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256689121|gb|ACV06923.1| DNA/RNA helicase, superfamily II [Kytococcus sedentarius DSM 20547]
          Length = 499

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 83/235 (35%), Gaps = 25/235 (10%)

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGS- 534
           H+T+     +   +        + GF LP       +           T++ SAT PG+ 
Sbjct: 151 HLTLAHARTVVLDEADEM---LDLGF-LPDVEKLLAMTPAG-----RHTMLFSATMPGAV 201

Query: 535 ------WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR--IL 586
                 +  +      +E++    G     ++    R    D  + +    Q   R   +
Sbjct: 202 VAMARRYMNQPTHIRAMEEV-PGAGATVEAIDQFVYRAHAMDKVEMVARLLQSEGRGLTI 260

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +   TKR A  + E L ER      +H ++    R + +R  R GK DVLV  ++   G+
Sbjct: 261 VFTRTKRTAAKVAEQLVERGFAAAAIHGDLGQGAREQALRAFRTGKVDVLVATDVAARGI 320

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           D+ +   V             + + +  IGR  R   + V +         + A+
Sbjct: 321 DVEDVTHVVNY-----QCPEDEKTYLHRIGRTGRAGKNGVAVTLVDWDDLHRWAV 370


>gi|254473978|ref|ZP_05087371.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
 gi|211956867|gb|EEA92074.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
          Length = 483

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 71/191 (37%), Gaps = 15/191 (7%)

Query: 521 LRPTTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
               T+++SAT            L     I V  + RP   +D  V   ++ ++   + D
Sbjct: 179 KVRQTVLLSATMPIQIRNLAKEFLSNPHEISVAPVSRPIEKIDQSVRFLNSSSKRAALLD 238

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            ++       R ++   TKR A+ ++ +L +  +    +H       R + +   + G+ 
Sbjct: 239 ILSE--DDIERAIVFTRTKRGADRVSGHLEKAGLSSAAIHGNKSQRNREKSLDGFKNGRI 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
            +LV  ++   G+DI     V   +           + +  IGR AR   S V +   D 
Sbjct: 297 KILVATDIAARGIDIDGVSHVVNYE-----LPNVPEAYVHRIGRTARAGKSGVAVSLCDA 351

Query: 693 ITKSIQLAIDE 703
             +     I+ 
Sbjct: 352 TEQPYLRDIER 362


>gi|255950466|ref|XP_002566000.1| Pc22g21030 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593017|emb|CAP99391.1| Pc22g21030 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 552

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 79/209 (37%), Gaps = 21/209 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T + SAT      +     + + I    G  D          VE+ +   + + +   +
Sbjct: 306 QTCMWSATWPKDVRQLASDFLSDYIQVNVGSTDLSANHRITQIVEVVADFEKRDKMIKHL 365

Query: 576 NLAAQ-QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               + +  + ++   TKR+A+D+T +L +       +H + +  ER  ++ + + GK  
Sbjct: 366 EKIMEDRSNKCIIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKQGKSP 425

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           ++V  ++   G+D+ +   V   D     +  +    +  IGR AR       +   T  
Sbjct: 426 IMVATDVASRGIDVRDITHVLNYD-----YPNNSEDYVHRIGRTARAGAKGTAITFFTTD 480

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            S Q        R    +    K  I+P+
Sbjct: 481 NSKQA-------RDLITILTEAKQQIDPR 502


>gi|190572660|ref|YP_001970505.1| putative ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia
           K279a]
 gi|190010582|emb|CAQ44191.1| putative ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia
           K279a]
          Length = 470

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 83/239 (34%), Gaps = 18/239 (7%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D        +SG+          + + GF LPS    R L   +       T++ SAT
Sbjct: 137 LIDHLERRSIDLSGIELLVLDEADRMLDMGF-LPSIK--RIL--AKLPKQNRQTLLFSAT 191

Query: 532 --PGSWELEQCQGIIVEQI-IRPTGLVDPPVE--IRSAR-TQVEDVYDEINLAAQQGLRI 585
                 +L        EQI + P   V   +   +      +  D+   +     +  + 
Sbjct: 192 FEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKRDLLLHLLAQDSR-EQT 250

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+   TK  ++ L  +L +  I+   +H      +R+  + D + G+  VLV  ++   G
Sbjct: 251 LVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTVLVATDIAARG 310

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           +DI E   V   D             +  IGR  RN  +   I         +  AI  
Sbjct: 311 IDINELPKVINFDLPMV-----AEDYVHRIGRTGRNGATGQAISLVAQDEVKLLRAIVR 364


>gi|120597338|ref|YP_961912.1| ATP-dependent RNA helicase RhlB [Shewanella sp. W3-18-1]
 gi|146294517|ref|YP_001184941.1| ATP-dependent RNA helicase RhlB [Shewanella putrefaciens CN-32]
 gi|189040045|sp|A4YB09|RHLB_SHEPC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040084|sp|A1RFB3|RHLB_SHESW RecName: Full=ATP-dependent RNA helicase rhlB
 gi|120557431|gb|ABM23358.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145566207|gb|ABP77142.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
 gi|319427882|gb|ADV55956.1| ATP-dependent RNA helicase, RhlB [Shewanella putrefaciens 200]
          Length = 439

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 88/251 (35%), Gaps = 32/251 (12%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNC 520
           + +Y        V +  +++  I  +   +  R   L   GF      D R L     + 
Sbjct: 145 IIDY--------VRQGIISLTAIQAVVLDEADRMFDL---GFI----KDIRFLFRRMPDA 189

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPV--EIR-SARTQVEDVYDE 574
            +   ++ SAT      E     + + +   I P       +  E+   ++   ED    
Sbjct: 190 NQRLNMLFSATLSMKVQELAYDHMNDPVKVDIAPDEKTSKNIKEEVFYPSQ---EDKMRL 246

Query: 575 INLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    ++    + ++   TK   E+L  +L     RV  +  +V   +RI I+     G+
Sbjct: 247 LLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQ 306

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
            D+LV  ++   GL I +   V   D             +  IGR  R  N  V I +A 
Sbjct: 307 LDILVATDVAARGLHISDVSHVYNYD-----LPDDCEDYVHRIGRTGRAGNKGVSISFAC 361

Query: 692 TITKSIQLAID 702
                   AI+
Sbjct: 362 EEYALNLPAIE 372


>gi|224088162|ref|XP_002308349.1| predicted protein [Populus trichocarpa]
 gi|222854325|gb|EEE91872.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 19/177 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYD 573
           R  T++ SAT    E+++     +   I          T L+   VE      +   + D
Sbjct: 239 RRQTMLFSAT-FPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVHETDKRSHLMD 297

Query: 574 EINLAAQ-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            ++   +     +    L+ V TK+ A+ L  +LY        +H +    ER   +R  
Sbjct: 298 LLHAQRETEVNGKHSLTLVFVETKKGADSLEHWLYVNKFPATSIHGDRSQQEREMALRSF 357

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           + GK  +LV  ++   GLDIP    V   D             +  IGR  R   + 
Sbjct: 358 KSGKTPILVATDVAARGLDIPHVAHVVNFD-----LPNDIDDYVHRIGRTGRAGKTG 409


>gi|114563875|ref|YP_751389.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335168|gb|ABI72550.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 428

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 108/301 (35%), Gaps = 36/301 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L +         V  + + + Q++ +   +  R  +L   GF   L   ++  P  
Sbjct: 142 TPGRLLD--------LVSSNALKLSQVTTLVLDEADRMLSL---GFTEELTQVLNLLP-- 188

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYD 573
                  +  T++ SAT      +  Q ++V  + I+        +  R      E    
Sbjct: 189 ------KQKQTLLFSATFPDEVRQLTQALLVNPLEIQLQSAEASTLVQRVMTVNREKKTA 242

Query: 574 EINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +    QQ    ++L+ V  K     L + L +R I     H +     R  ++   + G
Sbjct: 243 LLAHLLQQHQWRQVLIFVGAKNSCNHLAQKLAKRGITAEVFHGDKAQGARSRVLEGFKAG 302

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
              VL+  ++   GLDI +  +V   D       RS    +  IGR+ R     + L   
Sbjct: 303 DIQVLIATDIAARGLDIEKLPVVINFD-----LPRSPADYMHRIGRSGRAGEVGLALTLL 357

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHN-----INPQSVKEKIMEVIDPILLEDAATTNI 746
           +  +    ++ E  ++ + +LE  + +      + P+SV E+   +  P          +
Sbjct: 358 SHDEYHHFSVIE--KKNQIRLEREQVNGFEADDVVPESVLEQPKPMAKPEGSGKKKRKKL 415

Query: 747 S 747
           S
Sbjct: 416 S 416


>gi|257885750|ref|ZP_05665403.1| helicase [Enterococcus faecium 1,231,501]
 gi|257821606|gb|EEV48736.1| helicase [Enterococcus faecium 1,231,501]
          Length = 503

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 13/192 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +          + I+   +    ++   +R+   +  D+   +  
Sbjct: 176 QTLLFSATMPPAIKNIGVKFMKNPHHVKIKAKEVTADLIDQYYVRAKEYEKFDIMTRLFD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L   L  R  R   +H ++   +R+ ++R  + G  D+LV
Sbjct: 236 -VQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R       + +       
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMD 349

Query: 697 IQLAIDETTRRR 708
               I+  T++R
Sbjct: 350 YLHVIENLTKKR 361


>gi|219851679|ref|YP_002466111.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris
           E1-9c]
 gi|219545938|gb|ACL16388.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris
           E1-9c]
          Length = 550

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 74/210 (35%), Gaps = 31/210 (14%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+   TKR  ++L   L  R      +H ++K  +R  ++   R G  D+LV  ++   
Sbjct: 269 TLIFCNTKRRVDELVGQLQVRGYAAEALHGDLKQSQRDRVMGRFRSGGIDILVATDVAAR 328

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+D+ +   V   D       + +   +  IGR  R   +       +          E 
Sbjct: 329 GIDVDDIEAVFNYD-----IPQDEEYYVHRIGRTGRAGRTGRAFTFVS--------GKEI 375

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
            + R+ Q             V +  +  +  +   +   T + ID  +  +     + ++
Sbjct: 376 WKIRDIQ-------RYTNTRVIQAQVPTLSDV---EEIRTTLFIDKVKTIVDAGGLEKYV 425

Query: 765 KSLRKQMHLAADNLNFEEAARI------RD 788
             + K M     +L+   AA +      RD
Sbjct: 426 SMIEKLMRDDYASLD--IAAALLKMRMERD 453


>gi|145349088|ref|XP_001418972.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579202|gb|ABO97265.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 413

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 76/192 (39%), Gaps = 17/192 (8%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFTLLPPKVQVGVFSATLPPEALEITRKFMTKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           + +++ + D     A    + ++   T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 QWKLDTLCDLYETLAIT--QSVIFANTRRKVDWLTDNMRARDFTVSATHGDMDQNTRDVI 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KVILYADTITKS 696
            V +   T    
Sbjct: 377 GVSINFVTAEDE 388


>gi|254495452|ref|ZP_05108376.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85819807|gb|EAQ40964.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 411

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 83/246 (33%), Gaps = 39/246 (15%)

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD 556
           + + GF       N   + E+    +  T++ SAT      E  + I+            
Sbjct: 161 MLDMGFI------NDIKKIEKLCPRKKQTLLFSATIPEKIDELSKSIVKNA--------- 205

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGL--------------RILLTVLTKRMAEDLTEYL 602
             V+I    T  +++   +    ++                +I++   TK   + L + L
Sbjct: 206 TKVDINPEETTAKNIGQLLYYLPKKNKTDLCLHLLRNTINGKIIIFRRTKFAVDKLEQTL 265

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +    V  +H +     R + I D +  K  +L+  ++   G+DI     +   D    
Sbjct: 266 IKNGYNVASIHGDKTQGVRNKAIEDFKSKKASILIATDVAARGIDITNVDAIINFD---- 321

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
                    +  IGR  R   S +     +  ++  +A  E     EK ++  + H   P
Sbjct: 322 -IPNVPEIYVHRIGRTGRAGKSGIAFSFCSPDENNYIASIENL--IEKSIKVIEDH---P 375

Query: 723 QSVKEK 728
             + + 
Sbjct: 376 YPINKP 381


>gi|119718818|ref|YP_925783.1| DEAD/DEAH box helicase domain-containing protein [Nocardioides sp.
           JS614]
 gi|119539479|gb|ABL84096.1| ATP-dependent RNA helicase CsdA [Nocardioides sp. JS614]
          Length = 589

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E L E L  R +    ++ +V   +R   +  L+ GK D+LV  ++   
Sbjct: 256 MIVFVRTKNETETLAEKLRARGLSAMAINGDVAQAQRERTVNQLKSGKLDILVATDVAAR 315

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   I +     + +   I++
Sbjct: 316 GLDVERISHVVNYD-----IPTDTESYVHRIGRTGRAGRSGDAISFVTPRERYLLKHIEK 370

Query: 704 TTRRREKQLE 713
            TR+   Q++
Sbjct: 371 ATRQPLTQMQ 380


>gi|296386927|ref|ZP_06876426.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 639

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 11/193 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGII--VEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +   ++ SAT     ++    ++   E+I + P       +E R  R         +   
Sbjct: 184 KRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHL 243

Query: 579 AQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              G   ++L+   TK  A  L EYL +  +    +H       R + + D +     +L
Sbjct: 244 VTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRIL 303

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI +   V   +         +   +  IGR  R   S   I       +
Sbjct: 304 VATDIAARGLDIDQLPHVVNYE-----LPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEE 358

Query: 696 SIQLAIDETTRRR 708
            +  AI++ TR+R
Sbjct: 359 KLLKAIEKMTRQR 371


>gi|291299972|ref|YP_003511250.1| DEAD/DEAH box helicase domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569192|gb|ADD42157.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis
           DSM 44728]
          Length = 544

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 94/272 (34%), Gaps = 30/272 (11%)

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAA---------- 579
           PG   +     +  E        +  PV  E+  +   V  +   + +            
Sbjct: 195 PGGQRMLFSATLEKEIDTLVRRYLSEPVTHEVDPSAGAVTTMSHHVLVVKPKAKAPVTAA 254

Query: 580 --QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              Q  R +  V T+  A+ + + L E  +R   +H  +    R  ++   + G  D LV
Sbjct: 255 IAGQDGRSIAFVRTQLGADRVADQLREAGVRAEPLHGGMTQQARNAVLERFKGGGLDCLV 314

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   G+ +    +V  +D  ++G        +   GR AR   S  ++      +  
Sbjct: 315 ATDVAARGIHVDGVDVVLHVDPARDG-----KDYLHRAGRTARAGRSGTVVTLALPHQ-- 367

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
           +  +     R    ++ N   +I      + + +VI    L D     +  +A+      
Sbjct: 368 RKTVFGMLER----VDVNAARHIVDGVFTDSLAKVIGSGSLTDMEADTVEREARSAQRDA 423

Query: 758 KKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
                 +    +Q   AA  L+ E AAR+RD 
Sbjct: 424 DD---MIARAERQAQRAAK-LHAE-AARLRDR 450


>gi|152991203|ref|YP_001356925.1| transcription-repair coupling factor [Nitratiruptor sp. SB155-2]
 gi|151423064|dbj|BAF70568.1| transcription-repair coupling factor [Nitratiruptor sp. SB155-2]
          Length = 976

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 87/243 (35%), Gaps = 21/243 (8%)

Query: 206 AAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYI---------EKESSINEQID 256
           AA+ Y   ++  P   V             A V   D YI         +      E++D
Sbjct: 2   AARFYEYLRSSIPQILVVADEKEAQEASSAAKVLGIDHYILPDFRAQYGDDLRVFKEELD 61

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
            +   A  +       ++++ V  I              +++ GD  E + L   L +  
Sbjct: 62  EL--LAVLNDYYHTPKMLIAPVHTIAK-PMPVQRYFARKRVEFGDEFELESLKELLYQWG 118

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI-RNVE 375
           Y   DI   +G     GD ++IF  +  D   R+S F   IE I  F P T + I   +E
Sbjct: 119 YTFVDIVESKGEASFRGDIVDIFAPNF-DKPIRLSFFDTQIESIRYFDPQTQKSIKEELE 177

Query: 376 TIKIYANSHYVTPRPTLNTAMKY-----IKEELKMRLIELEKEGRLLEAQRLEQRITYDL 430
              +Y    ++     L   ++        ++L      + +   LLE +   +  ++DL
Sbjct: 178 AFTLYPA--FLIQDEALQEVIEQSDFDVFDKDLLSVGFWVAERASLLEGKEAIRSGSFDL 235

Query: 431 EML 433
           E L
Sbjct: 236 EEL 238



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 74/197 (37%), Gaps = 15/197 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             + +SATP    L      + +   IR       PV       Q + V + I    ++G
Sbjct: 612 HLLSMSATPIPRSLNMALSQLKDLSEIRTPPQNRKPVRTYVKEYQDKLVKEVILRELRRG 671

Query: 583 LRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++     +        EDL + L  + I V  +HS++      + +     G++D+L+ 
Sbjct: 672 GQVFYIYNSIAGIEEKKEDLQQLLPGKKILV--LHSKIAAATTEKELLRFAQGEYDILLS 729

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +++  G+ +P    + +  AD+ G       L Q  GR  R        Y        +
Sbjct: 730 TSIVESGIHMPNVNTIIVEGADRFGI----ADLHQLRGRVGRGGKEGFCYYLVED----K 781

Query: 699 LAIDETTRRREKQLEHN 715
             + E  ++R   LE N
Sbjct: 782 QKLTEEAKKRLIALESN 798



 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTK----RMAEDLTEYLYERNIRVRYMHSEVKTLER 621
            + E   + I    + G +  + V T     +  E L + L   NI V  +   V   E+
Sbjct: 497 GKTEVAMNAIYAIVKNGYQAAVVVPTTLLSAQHYESLVKRLEPFNISVTKIDRFVTAKEK 556

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            E ++ L+ G FDV+VG + L  G +    GLV I +  K G
Sbjct: 557 KERLQALKEGTFDVVVGTHALF-GAEFKNLGLVVIDEEHKFG 597



 Score = 41.6 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 137 DITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKTFTMAKVIEAMQR- 194
           DIT FQ    +  + DQ  AI  +L+ + S +    LL G  G GKT      I A+ + 
Sbjct: 453 DITLFQSHAGFEYTEDQKRAIDTILQRLSSGKVMDMLLSGDVGFGKTEVAMNAIYAIVKN 512

Query: 195 --PAIVMAPNKILAAQLYS 211
              A V+ P  +L+AQ Y 
Sbjct: 513 GYQAAVVVPTTLLSAQHYE 531


>gi|157128260|ref|XP_001661370.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882257|gb|EAT46482.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 639

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 12/145 (8%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A++  + ++ + TK+  +D+T  +         +H +    ER   +   R GK  +L+ 
Sbjct: 331 AEKECKTIIFIETKKRVDDITRKVLRDGWPAMCIHGDKSQREREYTLNSFRSGKNPILIA 390

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +  +    I  IGR  R+ N+       T   + +
Sbjct: 391 TDVAARGLDVDDVKFVINFD-----YPTTSEDYIHRIGRTGRSNNTGTAYTFFTPDNAGR 445

Query: 699 LAIDETTRRREKQLEHNKKHNINPQ 723
                   R    +    K  INP+
Sbjct: 446 A-------RELIDVLKEAKQVINPK 463


>gi|68066458|ref|XP_675212.1| ATP-dependent RNA helicase [Plasmodium berghei strain ANKA]
 gi|56494265|emb|CAH96169.1| ATP-dependent RNA helicase, putative [Plasmodium berghei]
          Length = 339

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 18/213 (8%)

Query: 517 EWNCLRPTTIVVSAT-PG------SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           ++       ++ SAT P          L     I +   +   G+      ++    Q  
Sbjct: 134 KFLPKEKQILMYSATFPVTVKEFRQIYLSDAHEINLMDELTLKGITQYYAFVK--ERQKV 191

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
              + +    Q     ++   +    E L + + E      Y+H+ +    R  +  D R
Sbjct: 192 HCLNTLFAKLQINQ-AIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFR 250

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G    LV  +L   G+DI    +V   D     F ++  + +  IGR+ R  +  + + 
Sbjct: 251 NGACRCLVSSDLFTRGIDIQSVNVVINFD-----FPKNSETYLHRIGRSGRYGHLGLAIN 305

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
             T      L   E     E Q      + I+P
Sbjct: 306 LITYEDRFNLYKIELELGTEIQ---PIPNEIDP 335


>gi|323701905|ref|ZP_08113575.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533209|gb|EGB23078.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans
           DSM 574]
          Length = 532

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 73/190 (38%), Gaps = 18/190 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQ----IIRPTGLVDPPVEIR----SARTQVEDVYDEI 575
            T++ SAT    E+ +     +       +    +  P +E        + ++E +   +
Sbjct: 183 QTLLFSAT-MPEEISRLARQYMTDPKFVTVSKANITAPSIEQIYYEAPEKHKLEALCRIL 241

Query: 576 NLA-AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +     QG   ++   TKR  ++L   L  R      +H ++   +R  ++R  R G+ +
Sbjct: 242 DTTEITQG---IVFCRTKRGVDELVAGLQARGYTAVSLHGDLSQQQRNTVMRQFRSGEVE 298

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   GLDI     V   D       +     +  IGR  R   S V +   T  
Sbjct: 299 LLVATDVAARGLDIEGVSHVINYD-----IPQDPEFYVHRIGRTGRAGRSGVAITIITPR 353

Query: 695 KSIQLAIDET 704
           +  QL + E 
Sbjct: 354 EYRQLRLIEN 363


>gi|313679216|ref|YP_004056955.1| ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977]
 gi|313151931|gb|ADR35782.1| ATP-dependent RNA helicase DbpA [Oceanithermus profundus DSM 14977]
          Length = 528

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 90/252 (35%), Gaps = 31/252 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART------QVEDVYDEINL 577
            T++ SAT   W  ++  G  +++      + D  V  R          ++  + D ++ 
Sbjct: 185 QTLMFSATLPGW-AKRLVGRHLKEPTVVNVVQDEEVSYREIAIEASPSARMSALSDLLH- 242

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            A    R ++   TK+ A+++   L  R      +H ++   +R   +   R G+  VLV
Sbjct: 243 -AHGPERAIVFTRTKKEADEVARALTARGHAAEAVHGDLNQTQRERSVGRFRSGQVGVLV 301

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDIPE  LV  L            S     GR  R   S  ++   +     
Sbjct: 302 ATDVAARGLDIPEVDLVVHLR-----LPERAESYQHRSGRTGRAGRSGTVIIFHSSR--- 353

Query: 698 QLAIDETTRRREKQLEHNK----KHNINPQS---VKEKIMEVIDPILLEDAATTNISIDA 750
                   RR   QLE       +H   P      + KI  ++     +      +  + 
Sbjct: 354 -------ERRELGQLERAVGRKFEHGRAPAPEEVQQAKIAGLLRRAAAQSEEDRAVWREV 406

Query: 751 QQLSLSKKKGKA 762
            Q  + ++  ++
Sbjct: 407 AQAWIEREDVES 418


>gi|302853426|ref|XP_002958228.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f.
           nagariensis]
 gi|300256416|gb|EFJ40682.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f.
           nagariensis]
          Length = 574

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 105/295 (35%), Gaps = 41/295 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR---------LPSC 507
            P  L +         +D  +  + Q + +   +  R     + GF          +PS 
Sbjct: 288 TPGRLLD--------CIDRHYAVLNQCNYVVLDEADRM---IDLGFEPQVIGVLDAMPSS 336

Query: 508 MDNRPLRFEEWNCLRPT--TIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPP 558
                         R    T + SAT  P    L +        ++     + T  V   
Sbjct: 337 FLKPDEDGAVLEANRTYRTTYMFSATMPPAVERLAKKYLRRPVVVVIGSAGKVTDNVTQR 396

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           V +     +   +  E+    ++  R+++ V T+R  +++  +L E   R   +H     
Sbjct: 397 VFVVKENEKPRVLEQEMESVDEK--RVIVFVNTQRQCDNVHRHLEELGYRCTILHGGKTQ 454

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            +R   I+  R G ++ L+  ++   G+D+P+  LV   D        +  +    IGR 
Sbjct: 455 DQREAGIKGFRDGTYNCLIATDVAGRGIDVPDVALVINYD-----MPNNIENYTHRIGRT 509

Query: 679 ARNVNSKVILYADTITKS-----IQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            R     V +   T+  +     ++  ++E+      +L  ++   + P S++ K
Sbjct: 510 GRAGKKGVAVTFLTLGDTGVFYDLKKLLEESKAAVPPELARHEASKLKPGSIEAK 564


>gi|289434525|ref|YP_003464397.1| DbpA-type ATP-dependent RNA helicase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170769|emb|CBH27309.1| DbpA-type ATP-dependent RNA helicase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 474

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 87/254 (34%), Gaps = 27/254 (10%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           ++   +   +  SAT    E++       E  +      +    I     Q E+    + 
Sbjct: 171 QFLPKKRQNLFFSAT-MPDEMQDLIKRYQEDPVVIEMAAEKTNPITHIEMQTENKEKTLQ 229

Query: 577 LA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                +     ++   TK   ++L++ L    +    +H  ++  ER   + D + GK  
Sbjct: 230 DVLITENPDSAIIFCNTKNQVDELSDLLQ---VNAAKIHGGLRQEERFRAMDDFKSGKSR 286

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTI 693
            L+  ++   G+D+    LV   D   E     K + +  IGR  R  NS K I +  T 
Sbjct: 287 FLIATDVAGRGIDVENVTLVINYDLPVE-----KENYVHRIGRTGRAGNSGKAISFVKTN 341

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
              +   I++               NI  +  K++   +I+    E+A            
Sbjct: 342 ENPLLRDIEDML-------------NITIE--KKRKPTIIEVKASEEAFRKKQQKRPIIK 386

Query: 754 SLSKKKGKAHLKSL 767
               +K   ++  L
Sbjct: 387 KARGEKLNKNIMKL 400


>gi|283832032|ref|ZP_06351773.1| ATP-dependent RNA helicase SrmB [Citrobacter youngae ATCC 29220]
 gi|291071651|gb|EFE09760.1| ATP-dependent RNA helicase SrmB [Citrobacter youngae ATCC 29220]
          Length = 442

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 78/198 (39%), Gaps = 11/198 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTG--LVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT     ++     ++E  +  +         +I     + +D+  +  +  
Sbjct: 181 RKQTMLFSATLEGDAIKDFAERLLEDPVEVSADPSTRERKKIHQFYYRADDIEHKTAMLI 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L +  I   Y+  E+   +R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELAGWLRQAGINNCYLEGEMVQNKRNEAIKRLTDGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT-- 692
           VLV  ++   G+DIP+   V   D  + G   +    I   GRA R   +  ++ A    
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSG--DAYLHRIGRTGRAGRKGTAISLVEAHDHL 358

Query: 693 ITKSIQLAIDETTRRREK 710
           +       IDE  + R  
Sbjct: 359 LLGKASRYIDEPLKARVI 376


>gi|221119958|ref|XP_002163544.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 53
           [Hydra magnipapillata]
          Length = 745

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 16/187 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            TI+ SAT  PG   +         +I      ++    V   VE      + + V D I
Sbjct: 452 QTIMTSATWPPGVQRMADKYLRDPIRINVGSLDLQACHSVSQLVEFIEQHEKQDRVMDFI 511

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERN--IRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +  A  G ++++ V  K  A+D++  L  +   I ++ +H +    +R + + D++ G  
Sbjct: 512 SAMAPDG-KLIIFVGRKVTADDISSNLAMKGTNIGIQCIHGDRDQSDREQALEDMKTGAA 570

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VL+  ++   GLDI +   V   D     F R     +  IGR  R   S   L   T 
Sbjct: 571 RVLIATDVASRGLDIKDLTHVLNYD-----FPRHIEDYVHRIGRTGRAGRSGCALTFVTR 625

Query: 694 TKSIQLA 700
              + +A
Sbjct: 626 EDWMHVA 632


>gi|167619557|ref|ZP_02388188.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
          Length = 454

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I + Q I     +   V     R   + + D + 
Sbjct: 247 QTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLL 306

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                    ++   TK  A+ L   L +   +   +H ++    R   IR LR  +  VL
Sbjct: 307 RDTALDQ-AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVL 365

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 366 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 418

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 419 EQGALKRIER 428


>gi|253743154|gb|EES99653.1| ATP-dependent RNA helicase-like protein [Giardia intestinalis ATCC
           50581]
          Length = 657

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++    K  A+ +  Y  +   RV  +H ++   ER   ++  + G+ ++L+G ++ 
Sbjct: 470 YQTIVFTNFKSEADRIFRYFDDMRYRVAVIHGDMTQKERENNLKYFKAGRTNILIGTDVA 529

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           + GLDIP   LV   D        +       IGR  R     + +      +    A+ 
Sbjct: 530 QRGLDIPNVRLVLNYD-----LPGNVDDYTHRIGRTGRAGRPGLAVTFVCPDRDNVSALK 584

Query: 703 ETTRR 707
           +  R+
Sbjct: 585 DIRRK 589


>gi|152993022|ref|YP_001358743.1| DEAD-box ATP dependent DNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424883|dbj|BAF72386.1| ATP-dependent RNA helicase, DEAD-box family [Sulfurovum sp.
           NBC37-1]
          Length = 460

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 89/256 (34%), Gaps = 41/256 (16%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVE--QIIRPTGLVDPPVEIR---SARTQVEDVYDEIN 576
            T++ SAT P    EL        E   ++      +  +E R       Q ++   ++ 
Sbjct: 175 QTLLFSATMPEPIKELANHILYQPEFISVVGDEETTNNIIEQRYYVINENQRDEAIVKLL 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  + ++    KR  + LTEYL  +      +H +++  +R  +I+  R G+  ++
Sbjct: 235 ETEDTN-KCIIFCRMKREVDRLTEYLQAQGFNASGLHGDLEQQDREVVIKAYRRGETKIM 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLD+ +   V       +       S +  IGR  R   S   +        
Sbjct: 294 VATDVAARGLDVKDVTHVFNYHIPFD-----PQSYVHRIGRTGRAGKSGQAI-------- 340

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKI-----MEVIDPILLEDAATTNISIDAQ 751
               +  T   RE Q             +++++     +  +      D ++     +  
Sbjct: 341 ---TLVTTEEFRELQ------------RIQKEVGADMHLATLQGGEGLDESSLEYLAEQI 385

Query: 752 QLSLSKKKGKAHLKSL 767
           +     K+ K  ++ L
Sbjct: 386 RDMPVHKEAKRLIEYL 401


>gi|319427184|gb|ADV55258.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 413

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 71/178 (39%), Gaps = 10/178 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDP--PVEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT      E  + ++ E ++I  T        VE R      +   + ++   +
Sbjct: 184 QTLLFSATLDDAIFELSKSLLREPKLIEVTKRNTTAAQVEQRVYAIDSDRKTEFVSHLIR 243

Query: 581 QGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                ++L+   TK+  + L + L + +I     H ++    R ++++  +LG   VLV 
Sbjct: 244 SNHWHQVLIFSRTKQGVDRLVQQLNKLSIVTHAFHGDLSQGAREKVLQAFKLGNIQVLVA 303

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            ++   GLDI E   V   +             I  IGR  R  ++ + +   +   +
Sbjct: 304 TDVAARGLDIVELKYVINFELPFI-----AEDYIHRIGRTGRAGSAGLAITLFSQEDT 356


>gi|114047740|ref|YP_738290.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889182|gb|ABI43233.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 487

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 78/244 (31%), Gaps = 34/244 (13%)

Query: 496 TLAEYGFR---------LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIV 545
            + + GF          LP    N  L F      +   +  SA P + E+E   +    
Sbjct: 158 RMLDMGFIEDINSIIEKLPEQRQN--LLFSATLSKQVKALAKSAIPDAIEIEISRKSAAS 215

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL--RILLTVLTKRMAEDLTEYLY 603
             I +    VD            +     ++   Q+    + L+ + TK  A  L   L 
Sbjct: 216 THIDQWLTTVDK-----------DKKSALLSHLIQENNWSQALIFIQTKHGAAKLVSQLE 264

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +R I     HS      R +++ D + GK   LV   +   G+DI     V   D   E 
Sbjct: 265 KRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFLVATGVASRGIDIDALARVINYDLPDE- 323

Query: 664 FLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
                   I  IGR  R  N    I +          AI+   RR    +   +     P
Sbjct: 324 ----ADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIE---RRLGHVIVRREIAGFEP 376

Query: 723 QSVK 726
           + + 
Sbjct: 377 KKIV 380


>gi|116054159|ref|YP_788602.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|313111948|ref|ZP_07797737.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa 39016]
 gi|115589380|gb|ABJ15395.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310884239|gb|EFQ42833.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa 39016]
          Length = 639

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 11/193 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGII--VEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +   ++ SAT     ++    ++   E+I + P       +E R  R         +   
Sbjct: 184 KRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHL 243

Query: 579 AQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              G   ++L+   TK  A  L EYL +  +    +H       R + + D +     +L
Sbjct: 244 VTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRIL 303

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI +   V   +         +   +  IGR  R   S   I       +
Sbjct: 304 VATDIAARGLDIDQLPHVVNYE-----LPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEE 358

Query: 696 SIQLAIDETTRRR 708
            +  AI++ TR+R
Sbjct: 359 KLLKAIEKMTRQR 371


>gi|148235819|ref|NP_001089455.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Xenopus laevis]
 gi|66910710|gb|AAH97561.1| MGC114699 protein [Xenopus laevis]
          Length = 758

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRS-ARTQVE 569
             +  T++ SAT  S E++    + +   +R            L    V IR       E
Sbjct: 356 SHQRQTLLFSAT-MSEEVKDLASVSLRNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDRE 414

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            V   +     Q   ++L   TK+ A  +   L    ++V  +H  +   +R+E +R  +
Sbjct: 415 AVACALLTRTFQDH-VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFK 473

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
             + D+LV  ++   GLDI     V  L         +    +  +GR AR   +   + 
Sbjct: 474 DEQIDILVATDVAARGLDIDGVKTVINL-----TMPGTVKHYVHRVGRTARAGKAGRSVS 528

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                 + +   I        K+ +   K  + PQ V  K  + I     E  A   +  
Sbjct: 529 LVGEEERKMLKEIV-------KKAQAPVKARVIPQDVISKFRDKITKSEKEIYAVMQLEK 581

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
           + +++ +S+ +     K L+++
Sbjct: 582 EEREMQMSEAQISVAKKKLQQE 603


>gi|82702922|ref|YP_412488.1| DEAD/DEAH box helicase-like [Nitrosospira multiformis ATCC 25196]
 gi|82410987|gb|ABB75096.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
           25196]
          Length = 472

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 10/156 (6%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + D +    +     ++   TKR A+ L + L  +      +H ++   +R   +  LR
Sbjct: 234 QLLDHLLRDIELKQ-AIVFTATKRDADMLADGLSAQGHAAAALHGDMSQRDRNRTLIKLR 292

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G   VLV  ++   G+D+     V   D  K          +  IGR  R   S + + 
Sbjct: 293 QGGIRVLVATDVAARGIDVAGITHVINFDLPKF-----AEDYVHRIGRTGRAGASGIAVS 347

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
           +A +        I+  T +R   +  +    + P++
Sbjct: 348 FASSKDGIHLKKIERFTGQR---IASHVVPGLEPRA 380


>gi|6014919|sp|O61305|DDX19_DROME RecName: Full=DEAD-box helicase Dbp80
 gi|3108197|gb|AAC23709.1| DEAD-box helicase [Drosophila melanogaster]
          Length = 460

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 76/188 (40%), Gaps = 11/188 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QIIRPT-------GLVDPPVEIRSARTQVEDVYDEI 575
             +  SAT G   ++  + I+ +  IIR          +    V+ ++   +  +    I
Sbjct: 250 QMLFFSATYGKEVMDFARLIVADPTIIRLMREEESLENIKQYYVKCKNEEGK-YNAIQNI 308

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G   ++   TKR A  L   +      V  +  ++  ++R++++   R G   V
Sbjct: 309 YGCISVGQ-AIIFCHTKRTAAWLAAKMTSDGHSVAVLTGDLTVVQRLDVLDRFRSGLEKV 367

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKT-SLIQTIGRAARNVNSKVILYADTIT 694
           L+  N+L  G+DI +  +V   D   +    +   + +  IGR  R   S + +   T  
Sbjct: 368 LITTNILSRGIDIEQLQVVVNFDLPVDLDGMADCETYLHRIGRTGRFGKSGIAINLITDE 427

Query: 695 KSIQLAID 702
           K++++  D
Sbjct: 428 KTMKVCSD 435


>gi|83282276|ref|XP_729699.1| ATP-dependent RNA Helicase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23488233|gb|EAA21264.1| ATP-dependent RNA Helicase [Plasmodium yoelii yoelii]
          Length = 477

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 18/213 (8%)

Query: 517 EWNCLRPTTIVVSAT-PG------SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           ++       ++ SAT P          L     I +   +   G+      ++    Q  
Sbjct: 272 KFLPKEKQILMYSATFPVTVKEFRQIYLSDAHEINLMDELTLKGITQYYAFVK--ERQKV 329

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
              + +    Q     ++   +    E L + + E      Y+H+ +    R  +  D R
Sbjct: 330 HCLNTLFAKLQINQ-AIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFR 388

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G    LV  +L   G+DI    +V   D     F ++  + +  IGR+ R  +  + + 
Sbjct: 389 NGACRCLVSSDLFTRGIDIQSVNVVINFD-----FPKNSETYLHRIGRSGRYGHLGLAIN 443

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
             T      L   E     E Q      + I+P
Sbjct: 444 LITYEDRFNLYKIELELGTEIQ---PIPNEIDP 473


>gi|332305447|ref|YP_004433298.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172776|gb|AEE22030.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 412

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 94/272 (34%), Gaps = 44/272 (16%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            + + GF   S + N+      W   R  +++ SAT     LE        + I    + 
Sbjct: 157 RMLDMGF---SSIVNQISAEARW---RKQSMLFSAT-----LEGAGISRFAKDILNDPVE 205

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQ-----------GLRILLTVLTKRMAEDLTEYLYE 604
                 R  + ++       + A  +               ++ V T+    +L + L  
Sbjct: 206 LEAASSRKEQGKIHQWLHLADDAKHKYALLKHILTHQVESAVVFVKTRDRLNELKQILER 265

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
               V ++  E+   +R   +   R G+  +L+  ++   G+D+     V   D  +   
Sbjct: 266 DGFTVCWLQGEMPQDKRNLSMAKFRSGEVKILIATDVAARGIDVENISHVINYDMPR--- 322

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
             +    +  IGR  R  N      A ++ ++  +AI     R  +Q             
Sbjct: 323 --TADVYVHRIGRTGRAGNKGT---AISLVEAHDIAIVPKIERYTEQ------------P 365

Query: 725 VKEKIMEVIDPILLEDA--ATTNISIDAQQLS 754
           +K ++++ + P   E    A   IS  A++ +
Sbjct: 366 LKRRVIDELRPKNKEAKPPAKRKISKRAKKAA 397


>gi|322514213|ref|ZP_08067275.1| superfamily II helicase [Actinobacillus ureae ATCC 25976]
 gi|322119906|gb|EFX91915.1| superfamily II helicase [Actinobacillus ureae ATCC 25976]
          Length = 607

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 72/198 (36%), Gaps = 28/198 (14%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TK    D+TE       R   ++ ++    R + +  L+ G+ D+LV  ++   
Sbjct: 248 AIIFTRTKTGTIDITELCERNGYRAAALNGDMTQQAREQTLAKLKSGRLDILVATDVAAR 307

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR------NVNSKVILYADTITKSIQ 698
           G+DI    LV   D   +    S    I   GRA R       V  +       I   ++
Sbjct: 308 GIDIERISLVVNFDIPLD--AESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 365

Query: 699 LAIDET---------TRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
             IDE           +RREK         +H+       EK  E+++ +   D     +
Sbjct: 366 KPIDEVAIPNHEILMEKRREKFKARVSAQLEHHD-----LEKYRELLEDLFTADQDHEEL 420

Query: 747 SIDAQQLSLSKKKGKAHL 764
           +     + +  ++ +  +
Sbjct: 421 AA---AMMMMLQEKQKLI 435


>gi|296216595|ref|XP_002754615.1| PREDICTED: ATP-dependent RNA helicase DDX25 [Callithrix jacchus]
          Length = 483

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 74/208 (35%), Gaps = 25/208 (12%)

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GF   S    R L  E         ++ SAT      E C     E+II    ++    E
Sbjct: 257 GFSDHSIRIQRALPSEC------QMLLFSAT-----FEDCVWRFAERIIPDPNVIKLRKE 305

Query: 561 IRSARTQVEDVYDEINLAAQQGL------------RILLTVLTKRMAEDLTEYLYERNIR 608
                  ++  Y        +              + ++   T++ A+ LT  + E   +
Sbjct: 306 -ELTLNNIQQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRQNAKWLTMEMIEDGHQ 364

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD-KEGFLRS 667
           V  +  E+   +R  II+  R GK  VL+  N+   G+D+ +  +V   D   K+G    
Sbjct: 365 VSLLTGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPD 424

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITK 695
             + +  IGR  R     +      + K
Sbjct: 425 YETYLHRIGRTGRFGKKGLAFNMIEVDK 452


>gi|201067640|gb|ACH92926.1| vasa protein [Parhyale hawaiensis]
          Length = 707

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 64/178 (35%), Gaps = 14/178 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV-----DPPVEI--RSARTQVEDVYDEIN 576
            T++ SAT            +   +    G V     D   E+     + + E +  +I 
Sbjct: 460 QTLLFSATFPEEIQTLACNHLQNYVFYAVGTVGAANTDVCQEVLNVPRQQKREVLMSKIE 519

Query: 577 LAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                G  ++L+ V TKR A+ L   L  + +    +H +    +R E +   + G   +
Sbjct: 520 EFMANGDNKVLIFVETKRTADFLATLLSSQQLNSTSIHGDRFQSQREEALAQFKAGIRSI 579

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADT 692
           LV   +   GLDI     V   D  KE         +  IGR  R  N    + + D 
Sbjct: 580 LVATAVAARGLDIRGVSHVINYDLPKEV-----DEYVHRIGRTGRVGNKGHAVSFYDE 632


>gi|237732562|ref|ZP_04563043.1| ATP-dependent RNA helicase SrmB [Citrobacter sp. 30_2]
 gi|226908101|gb|EEH94019.1| ATP-dependent RNA helicase SrmB [Citrobacter sp. 30_2]
          Length = 442

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 77/198 (38%), Gaps = 11/198 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT     ++     ++E  +            +I     + +D+  +  +  
Sbjct: 181 RKQTMLFSATLEGDAIKDFAERLLEDPVEVSADPSTRERKKIHQFYYRADDIEHKTAMLI 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L  +L +  I   Y+  E+   +R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELAGWLRQAGINNCYLEGEMVQNKRNEAIKRLTDGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT-- 692
           VLV  ++   G+DIP+   V   D  + G   +    I   GRA R   +  ++ A    
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSG--DAYLHRIGRTGRAGRKGTAISLVEAHDHL 358

Query: 693 ITKSIQLAIDETTRRREK 710
           +       IDE  + R  
Sbjct: 359 LLGKASRYIDEPLKARVI 376


>gi|161723024|gb|ABX76969.1| Vasa [Parhyale hawaiensis]
          Length = 676

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 64/178 (35%), Gaps = 14/178 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV-----DPPVEI--RSARTQVEDVYDEIN 576
            T++ SAT            +   +    G V     D   E+     + + E +  +I 
Sbjct: 429 QTLLFSATFPEEIQTLACNHLQNYVFYAVGTVGAANTDVCQEVLNVPRQQKREVLMSKIE 488

Query: 577 LAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                G  ++L+ V TKR A+ L   L  + +    +H +    +R E +   + G   +
Sbjct: 489 EFMANGDNKVLIFVETKRTADFLATLLSSQQLNSTSIHGDRFQSQREEALAQFKAGIRSI 548

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADT 692
           LV   +   GLDI     V   D  KE         +  IGR  R  N    + + D 
Sbjct: 549 LVATAVAARGLDIRGVSHVINYDLPKEV-----DEYVHRIGRTGRVGNKGHAVSFYDE 601


>gi|168053931|ref|XP_001779387.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669185|gb|EDQ55777.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 741

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 16/188 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT--------GLVDPPVEIRSART-QVEDVYDE 574
            T++ SAT     +E+    I+   IR T          +   V +  +   +   + D 
Sbjct: 414 QTLLFSAT-MPKRVERLAREILTDPIRVTVGEIGSANEDITQVVTVLPSDAEKTPWLLDR 472

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +      G  +L+   TK   E+L   + E   +V  +H +     R+E+++  + G + 
Sbjct: 473 LQPFVDDGD-VLVFASTKLRVEELEGKISEAGFKVAALHGDKDQATRMEVLQKFKNGIYH 531

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   GLDI     V  +D       R   S +  IGR  R  +   + +     
Sbjct: 532 ILVATDVAARGLDIKSIKTVVNVD-----IARDMDSHVHRIGRTGRAGDKDGVAHTLVTG 586

Query: 695 KSIQLAID 702
           K  + A +
Sbjct: 587 KEARFAGE 594


>gi|116252340|ref|YP_768178.1| cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256988|emb|CAK08082.1| putative cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 521

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 60/182 (32%), Gaps = 15/182 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVED-----VYDE 574
            T+  SAT    E+++     ++   R            V  R   +  +D     V  E
Sbjct: 186 QTLFFSAT-MPSEIQKLADRFLQNPERIEVAKPASAAATVTQRFVASHGKDYEKRAVLRE 244

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +  A  +    ++    K+   DL   L      V  +H ++    R   ++  R G   
Sbjct: 245 LVRAQTELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNLQ 304

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   GLDIP+   V   D             +  IGR  R   S       T  
Sbjct: 305 LLVASDVAARGLDIPDVSHVFNFDVPI-----HSEDYVHRIGRTGRAGRSGAAFTLVTKR 359

Query: 695 KS 696
            +
Sbjct: 360 DT 361


>gi|220933542|ref|YP_002512441.1| DEAD/DEAH box helicase domain-containing protein [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219994852|gb|ACL71454.1| DEAD/DEAH box helicase domain-containing protein [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 432

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 103/312 (33%), Gaps = 43/312 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  + +Y  +          + + Q+  +   D      + + GF      D R L   
Sbjct: 147 TPGRIIDYFKQKVF------DMRVVQVMVLDEADR-----MFDLGFI----KDIRFLLRR 191

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIR-----SARTQVED 570
                   +++ SAT     +E     +   + ++          +R      A  +   
Sbjct: 192 MTPPTERQSMLFSATLSHRVMELAYEHMNNPEKVQTRDEQVTAQRVRQVVYYPANPEKIP 251

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +        R ++ V TK MA+ L  +L   +I+V  +  +V   +R  +++    
Sbjct: 252 LLLGLMKRIGPS-RSMVFVNTKHMADKLEAWLKGNDIKVAVLSGDVPQQKRQRLLKQFEN 310

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
            +F VLV  ++   GL IP+   V   D       +S    +  IGR  R       + +
Sbjct: 311 DEFQVLVATDVAARGLHIPDVSHVFNFD-----LPQSGEDYVHRIGRTGRAGAEGDAVSF 365

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHN-INPQ-------SVKEKIMEVIDPILLEDA 741
           A   +      I++        +    +   I+P+         K +I E +      D 
Sbjct: 366 ACEDSAFYLPEIEQY-------IGFKIEAGAIDPELLVKPAPPAKREIRERLGAQNRGDR 418

Query: 742 ATTNISIDAQQL 753
                S   ++ 
Sbjct: 419 GGKRASPRRRRE 430


>gi|159478699|ref|XP_001697438.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158274317|gb|EDP00100.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 515

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 64/178 (35%), Gaps = 19/178 (10%)

Query: 522 RPTTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           +  T++ SAT P   E      L +   + +  +  PT  V   +E      +++ +   
Sbjct: 293 KHQTLLFSATMPKEIEELARAYLNKPVTVKIGAVSTPTANVSQRLEHAPEPQKLDILVAL 352

Query: 575 INLAAQQGLR-------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           I+                ++ V  K   +++   L E  I    +H  +   ER   +RD
Sbjct: 353 ISAEVAAEAAGGPPMPLTIVFVERKTRCDEVAAALREDGINANALHGGLNQNEREAALRD 412

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              G   VLV  ++   GLDI   G V  +D  K     +    +  IGR  R     
Sbjct: 413 FAKGDIKVLVATDVASRGLDIKGIGHVINMDLPK-----TFEDYVHRIGRTGRAGTKG 465


>gi|77361885|ref|YP_341460.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76876796|emb|CAI88018.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 434

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 76/198 (38%), Gaps = 34/198 (17%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           +  T++ SAT              EQ+ +    L++ PVEI+  +++ E    +   +  
Sbjct: 192 KKQTMLFSAT------------FPEQVKLLTQDLLNDPVEIQ-VQSKDESTLVQRVFSVN 238

Query: 581 QGLRI---------------LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +G +                L+ V  K+  E L + L +R +  +  H +    ER  +I
Sbjct: 239 KGEKTTVLAHLIKTHKWRQALIFVNAKKDCEHLAQKLEKRGVNAQVFHGDKGQSERTRVI 298

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              + G+ +VL+  ++   GLDI +  +V   +       RS    +  IGR+ R     
Sbjct: 299 EKFKAGEIEVLIATDIAARGLDIEKLPVVINFN-----LPRSPADYMHRIGRSGRAGEVG 353

Query: 686 VILYADTITKSIQLAIDE 703
           + L            I E
Sbjct: 354 LALSLVDYEDLHHFKIIE 371


>gi|325685734|gb|EGD27812.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 453

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 5/100 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
              L+   TK+M ++L +YL ++ ++V  +H  +   ER   +R++R G++  +V  +L 
Sbjct: 245 YLALVFANTKQMVDELADYLTKQGLKVAKIHGGITERERKRTLREVRAGQYQYVVASDLA 304

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             G+D+P   LV   +  KE        +I  IGR  RN 
Sbjct: 305 ARGIDLPGVSLVINYEIPKE-----LEFIIHRIGRTGRNG 339


>gi|257869404|ref|ZP_05649057.1| DEAD-box ATP dependent DNA helicase [Enterococcus gallinarum EG2]
 gi|257803568|gb|EEV32390.1| DEAD-box ATP dependent DNA helicase [Enterococcus gallinarum EG2]
          Length = 448

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 119/346 (34%), Gaps = 42/346 (12%)

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           +        T  +         +  +   +     EL  ++   +   +L E Q+ E R+
Sbjct: 45  SQTGSGKTHTFLLPLMDQIDPQKDEVQVVITAPSRELATQI--YQAAKQLAEFQQPEIRV 102

Query: 427 TYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSL-------LFVDESHVT 479
           T  +   +       ++N    L    PG     + + I E +L         +DE+ +T
Sbjct: 103 TNFVGGTDKQRQMDRLQNQQPQLVIGTPGR----ILDMINEQALAVHTARAFVIDEADMT 158

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           +        G       +A    RLP  +            LRP        P   E   
Sbjct: 159 LD------MGFLEEVDQIAS---RLPEKLQMLVFSATIPEKLRPFLKKYLENPLIEE--- 206

Query: 540 CQGIIVEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
                    IRP  ++   +E  + S + + ++      L        ++   TK   ++
Sbjct: 207 ---------IRPKAVISESIENWLISTKGKDKNQLVYQLLTTGHPYLAIVFANTKSRVDE 257

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           LT+YL E+ ++V  +H ++   ER  ++R ++  ++  +V  +L   G+DI     V   
Sbjct: 258 LTDYLKEKGLKVAKIHGDITPRERKRVMRQVQNLEYQYVVATDLAARGIDIEGVSHVINA 317

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAID 702
           +             I  +GR  RN  +   I   D   +    AI+
Sbjct: 318 E-----IPADLDFFIHRVGRTGRNQLAGTAITLYDPSDEQAIQAIE 358


>gi|253681284|ref|ZP_04862082.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
 gi|253562522|gb|EES91973.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
          Length = 528

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 30/265 (11%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIR----SARTQVEDVYDEIN 576
            TI+ SAT      EL +      E I +    L  P +E R        ++E +   I+
Sbjct: 180 QTILFSATMAKAIIELSKKYQNNAEFIKVVHKQLTVPNIEQRYLEVKENNKLEVLSRLID 239

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +   +    ++   TK+  +++   L  R      +H ++K  +R  ++   R G  ++L
Sbjct: 240 MRNPK--LSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNGTIEIL 297

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY-----AD 691
           V  ++   G+D+ +   V   D       + +   +  IGR  R   S +        A 
Sbjct: 298 VATDVAARGIDVDDVEAVFNYD-----LPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAI 352

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-----------KIMEVIDPILLED 740
              + I+       +R E     + +       +++           K ++ I+ +L ED
Sbjct: 353 RKLRDIERYTKTKVKRAEIPSASDVEEFKVNAFLEKVKGTIEEGHLGKYIDYIENLLDED 412

Query: 741 AATTNISIDAQQLSLSKKKGKAHLK 765
            AT +I+    ++SL ++K +  L 
Sbjct: 413 YATIDIAAALLKMSLGEEKKEEILD 437


>gi|260799746|ref|XP_002594845.1| hypothetical protein BRAFLDRAFT_124435 [Branchiostoma floridae]
 gi|229280082|gb|EEN50856.1| hypothetical protein BRAFLDRAFT_124435 [Branchiostoma floridae]
          Length = 724

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L   L    I V  +H++    +R   ++  R GK  VL+   L+  
Sbjct: 460 VLIFVQSKERAKELFHELIYDGINVDVIHADRTQTQRDNTVKCFRTGKIWVLICTELMGR 519

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE 703
           G+D     LV   D     F  S  S I  IGR  R     K + +          +I  
Sbjct: 520 GIDFKGVNLVINYD-----FPTSAVSYIHRIGRTGRAGRPGKALTFFTEDDIVHLRSIAN 574

Query: 704 TTR 706
             R
Sbjct: 575 VMR 577


>gi|159484128|ref|XP_001700112.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158272608|gb|EDO98406.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 637

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 23/154 (14%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    KR  + + EYL  + +    +H +    +R   I   + G  DVLV  ++  +
Sbjct: 446 VLVFAENKRDVDIIHEYLLVQGVEAVAVHGDKAQEDRHAAIASFKKGDADVLVATDVASK 505

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-------YADTITKSI 697
           GLD P+   V   D  +E       + +  IGR  R   + V          ++TI   +
Sbjct: 506 GLDFPDIQHVINYDMPEE-----IENYVHRIGRTGRCGKTGVATTFINTKQCSETILLDL 560

Query: 698 QLAIDETTRR-----------REKQLEHNKKHNI 720
           +  + E  +R            E Q E  +K  I
Sbjct: 561 KHLLKEAKQRVPHFLLALDDPLEAQAELEEKSGI 594


>gi|116748877|ref|YP_845564.1| type III restriction enzyme, res subunit [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697941|gb|ABK17129.1| type III restriction enzyme, res subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 1077

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 30/243 (12%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATL--------AEYGFRLPSCMDNRP 512
           LF+Y      + +DE H    +        F     L         + G  L  C +N  
Sbjct: 485 LFDY------VVIDEFHHASARSYQKLIDHFQPAFLLGLTATPERTDGGDLLALCAENLV 538

Query: 513 LRFEEWNCLRPTTIVVSATPG-SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            R +    +R   +      G   E++         I   +G  +     R+  T+   V
Sbjct: 539 YRCDLVEGIRDGLLCPFRYFGVPDEVDYSN------IPWRSGRFNEEALTRAVATKRRAV 592

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                  ++ G R L    ++R A+ + +Y   + +R   +HS  +T  R   ++ L  G
Sbjct: 593 NALEQYRSRAGRRTLAFCCSQRHADFMADYFTNQGVRAASVHSGPQTAPRGGTLKRLTDG 652

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK----VI 687
           + DV+  +++  EG+D+P    V +L         S+   +Q  GR  R    K    VI
Sbjct: 653 ELDVIFAVDMFNEGVDLPNVDTVMMLRPT-----ESRILWLQQFGRGLRVAEGKDYLRVI 707

Query: 688 LYA 690
            Y 
Sbjct: 708 DYI 710


>gi|332374956|gb|AEE62619.1| unknown [Dendroctonus ponderosae]
          Length = 588

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A+ L   L    I V  +H++    +R  +++  R GK  VL+   L+  
Sbjct: 368 VLIFVQSKERAQQLFNELIYDGIMVDAIHADRTQTQRDNVVKCFREGKIWVLICTELMAR 427

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE 703
           G+D     LV   D     F  S  S +  IGRA R   + K + +       +  ++  
Sbjct: 428 GIDFKGVNLVVNYD-----FPPSTISYVHRIGRAGRAGRTGKAVTFFTQDDTPLLRSVAH 482


>gi|218187683|gb|EEC70110.1| hypothetical protein OsI_00766 [Oryza sativa Indica Group]
          Length = 470

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 15/187 (8%)

Query: 524 TTIVVSAT-PGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E        +  + II  + ++    +   VEI S  +Q  +    +
Sbjct: 247 QTLYWSATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILS-ESQKYNKLVNL 305

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G RIL+ + TK+  + +T  L         +H +    ER  ++ + + GK  +
Sbjct: 306 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPI 365

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  S    +  IGR  R        Y      
Sbjct: 366 MTATDVAARGLDVKDVKYVINYD-----FPGSLEDYVHRIGRTGRAGAKGTA-YTFFTAA 419

Query: 696 SIQLAID 702
           + + A D
Sbjct: 420 NARFAKD 426


>gi|217964610|ref|YP_002350288.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HCC23]
 gi|217333880|gb|ACK39674.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HCC23]
 gi|307570824|emb|CAR84003.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
          Length = 470

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 84/250 (33%), Gaps = 27/250 (10%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            +   +  SAT    E++       +  +      +    I     Q ++    +     
Sbjct: 171 KQRQNLFFSAT-MPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEMQTDNKEKTLKDVLI 229

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +     ++   TK   ++LT+ L   +++   +H  ++  +R   + D + GK   L+ 
Sbjct: 230 TENPDSAIIFCNTKNQVDELTDLL---DVKASKIHGGLRQEDRFRAMDDFKSGKSRFLIA 286

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            ++   G+D+    LV   D   E     K + +  IGR  R   S K I +  T    +
Sbjct: 287 TDVAGRGIDVDNVSLVINYDLPIE-----KENYVHRIGRTGRAGKSGKAISFVKTNENPL 341

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
              I+E                I     K++   VI+    EDA                
Sbjct: 342 LRDIEEM-----------LDVTIE----KKRKPTVIEVKANEDAFRKKQQKRPTIKKARG 386

Query: 758 KKGKAHLKSL 767
           +K   ++  L
Sbjct: 387 EKLNKNIMKL 396


>gi|119776347|ref|YP_929087.1| ATP-dependent RNA helicase RhlB [Shewanella amazonensis SB2B]
 gi|189040038|sp|A1SAL1|RHLB_SHEAM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|119768847|gb|ABM01418.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
           SB2B]
          Length = 439

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 85/254 (33%), Gaps = 48/254 (18%)

Query: 480 IPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLRPTTIVVS- 529
           +  I  +   +  R   L   GF         R+P   +   + F     ++   +    
Sbjct: 156 LGAIQAVVLDEADRMFDL---GFIKDIRFLFNRMPGAKERLNMLFSATLSMKVQELAYDH 212

Query: 530 -ATPGSWEL---EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG--L 583
              P   E+   E+    I E+I  P+               +ED    ++   ++    
Sbjct: 213 MNDPVKVEIAPEEKTSRNIKEEIFYPS---------------MEDKLKLLHSLIEEDWPE 257

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TK   E+L   L     RV  +  +V   +R++I+      + D+LV  ++  
Sbjct: 258 KAIVFANTKYQCENLWASLEADGHRVGLLTGDVPQKKRLKILEQFTQSELDILVATDVAA 317

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT--------IT 694
            GL I +   V   D             +  IGR  R     V + +A          I 
Sbjct: 318 RGLHISDVSHVYNYD-----LPDDCEDYVHRIGRTGRAGQKGVSVSFACEEYALNLPAIE 372

Query: 695 KSIQLAIDETTRRR 708
             I+ +I  T+  R
Sbjct: 373 DYIKHSIPVTSYDR 386


>gi|117926052|ref|YP_866669.1| type III restriction enzyme, res subunit [Magnetococcus sp. MC-1]
 gi|117609808|gb|ABK45263.1| type III restriction enzyme, res subunit [Magnetococcus sp. MC-1]
          Length = 560

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 91/258 (35%), Gaps = 33/258 (12%)

Query: 451 GRNPGEPPPTL-----FEYIPEDSLLFVDESHVTIP-QISGMYRGDFHRKATLAEYGFRL 504
           GR      PTL      + +PE  LL +DE+H         +      R      YG   
Sbjct: 91  GRATFAMVPTLARQKNLDAMPELGLLVIDEAHHAAANSYRRIIDTALDRNPDCCIYGL-- 148

Query: 505 PSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI-------------IRP 551
            +   NR  +      LRP    V+      EL Q   ++  +              +R 
Sbjct: 149 -TATPNRGDK----KALRPIFSNVADQVRLGELIQSGHLVKPRTFVVDVGTQDALKSVRK 203

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRV 609
           T       E+     +       I    ++    + ++   T   A+++T+     ++  
Sbjct: 204 TADDFDMAEVSQIMNKAPVTEAVIKHWKEKAGTRKTIVFCSTVDHAQNVTDAFNNADVEA 263

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H E+ T ER   +     G   V+V + +L EG D P    V +L          K+
Sbjct: 264 VMVHGELSTGERKAALARFEKGSAMVVVNVAVLTEGYDHPPTSCVVLLRPSSY-----KS 318

Query: 670 SLIQTIGRAARNVNSKVI 687
           ++IQ +GR  R V+  + 
Sbjct: 319 TMIQMVGRGLRTVDPALF 336


>gi|154493718|ref|ZP_02033038.1| hypothetical protein PARMER_03059 [Parabacteroides merdae ATCC
           43184]
 gi|154086928|gb|EDN85973.1| hypothetical protein PARMER_03059 [Parabacteroides merdae ATCC
           43184]
          Length = 436

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 7/155 (4%)

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           ++ +  +   V     + ++E +Y  +     +G   L+    +   E ++ YL E  + 
Sbjct: 198 VKESKGLALRVVKSPVKDKLETLYKLLGEL--KGGSALIFCNYRETVERVSNYLTEMGVD 255

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
             Y H  ++  ER   +   R G   V +  +L   GLDIPE   V            S+
Sbjct: 256 NEYFHGGMEQPERERALSHFRNGSATVFISTDLASRGLDIPEVKNVI-----HYHLPVSE 310

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            + +   GR AR     V        ++I   I  
Sbjct: 311 EAYVHRNGRTARMNAEGVAYLILNAEETIPEYITR 345


>gi|71021007|ref|XP_760734.1| hypothetical protein UM04587.1 [Ustilago maydis 521]
 gi|46100328|gb|EAK85561.1| hypothetical protein UM04587.1 [Ustilago maydis 521]
          Length = 645

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 69/191 (36%), Gaps = 11/191 (5%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-----LVDPPVEIRSARTQVEDV 571
            +   +  T++ SAT      +  +  ++  +I   G      +D   E+   + Q   +
Sbjct: 392 GFFKQQRQTLLFSATMPKKIQDFAEQSLIRPVIINVGRAGAASLDIIQEVEYVK-QEAKM 450

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
              +    +    +++    K   +D+ EYL  + +    +H      ER   IR  + G
Sbjct: 451 VYLLECLQKTAPPVIIFSDNKNEVDDIQEYLLLKGVEAVAIHGSKTQDEREYAIRAFKSG 510

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           + DV+V   +  +GLD  E   V      KE         +  IGR  R+  + +     
Sbjct: 511 QKDVMVASGVASKGLDFSEIQHVINYTMPKE-----IEDYVHQIGRTGRSGKTGIATTFV 565

Query: 692 TITKSIQLAID 702
                 Q  +D
Sbjct: 566 NANTQEQTLLD 576


>gi|219685734|ref|ZP_03540546.1| transcription-repair coupling factor [Borrelia garinii Far04]
 gi|219672729|gb|EED29756.1| transcription-repair coupling factor [Borrelia garinii Far04]
          Length = 1124

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 95/253 (37%), Gaps = 22/253 (8%)

Query: 173 LLGVTGSGKTFTMAKV--IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L G  G  K F + K+       +  +++     L        KN       + F   Y 
Sbjct: 32  LTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTL-----DNIKNDLKVITNQIFELNY- 85

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
            + P  Y         K +  NE+I  +         +     +    S +  I +  + 
Sbjct: 86  -FNPLVYKG----IGSKNTIFNERIKFL----INFYKKNPGIYITVLKSLLSKIPNKNTL 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
              I +++   ++ + ++  +L+   Y++     I G F + G+ I+++P   E+   ++
Sbjct: 137 LNNICKIEKNTNINRTDIEKTLITLGYEKTLRVTIPGEFAIKGEIIDLYP-FGEESPIKI 195

Query: 351 SMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKE-ELKMRLI 408
            +  + IEEI +F PLT  K    +   +I      +     +N+    IK  E    L 
Sbjct: 196 VLNFDKIEEIRKFNPLTQLKQDNEILEFQILPKKEIIWKNEIINSLKTKIKSVEYNKILE 255

Query: 409 E--LEKEGRLLEA 419
           E  L+KE +  E 
Sbjct: 256 ELNLKKEAKTEEM 268



 Score = 45.9 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 64/185 (34%), Gaps = 12/185 (6%)

Query: 525 TIVVSATPGSWELEQCQ---GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L         I    I P   V     + S    +  +   I     +
Sbjct: 733 CLSLSATPIPRSLHMSLIKLRDISVLKIPPKNRVKIEAYLESFSELL--IKHAIESELSR 790

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++ L          L   + +     R   +H ++   E   I+ +     + +L+  
Sbjct: 791 DGQVFLVNHNIEELHYLKTLIEKLTPYARIAIIHGKLTGDEIENIMHNFIKKAYQILLAT 850

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI-Q 698
            ++  G+DIP    + I +A+K G  +    L Q  GR  R        +    ++ + +
Sbjct: 851 TIIENGIDIPNANTIIINNANKFGLAQ----LYQLKGRVGRGSKKAYAYFLYQDSEKLNE 906

Query: 699 LAIDE 703
            +I+ 
Sbjct: 907 RSIER 911


>gi|195494738|ref|XP_002094967.1| GE22119 [Drosophila yakuba]
 gi|194181068|gb|EDW94679.1| GE22119 [Drosophila yakuba]
          Length = 594

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    +QGL+  +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G 
Sbjct: 358 MRDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFREGS 417

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
             VL+   L+  G+D     LV   D     F  +  S I  IGR  R       I +  
Sbjct: 418 IWVLICTELMGRGIDFKGVNLVINYD-----FPPTTISYIHRIGRTGRAGRPGRAITFFT 472

Query: 692 TITKSIQLAI 701
               S   +I
Sbjct: 473 QEDTSNLRSI 482


>gi|197116587|ref|YP_002137014.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
 gi|197085947|gb|ACH37218.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
          Length = 453

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 7/140 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TK+ A+ L   LY +      +H ++    R + I  +R GK  +LV  ++  
Sbjct: 246 KAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITMMRRGKVRLLVATDVAA 305

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLD+     V   D  K          +  IGR  R   + + +   ++ + +   +D 
Sbjct: 306 RGLDVTGISHVINYDLPKF-----AEDYVHRIGRTGRAGATGIAISFCSMNEVVY--LDR 358

Query: 704 TTRRREKQLEHNKKHNINPQ 723
             R   K+L  +      P 
Sbjct: 359 IERFTGKKLPMHVVEGFEPT 378


>gi|145493178|ref|XP_001432585.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399698|emb|CAK65188.1| unnamed protein product [Paramecium tetraurelia]
          Length = 564

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 90/240 (37%), Gaps = 36/240 (15%)

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           GL    + IRS +    +      L  +   + ++ V TK     L   L   ++    +
Sbjct: 331 GLKQYLLRIRSNQDSDREATLITLLKTKFKEKTIIFVKTKHDCHRLAIVLGFLDMSSCEL 390

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +   +RI+   D + GKF  L+  +L   GLD+ +   V   +          T  I
Sbjct: 391 HGNLSQQQRIQAYEDFKEGKFQFLLATDLAARGLDLTDVKAVINYE-----IPYEVTRYI 445

Query: 673 QTIGRAARNV----------NSKVILYADTITKSIQ---LAIDETTR----RREKQLEHN 715
             +GR AR             ++V+ +   I +S Q     I +T +    RR+ Q    
Sbjct: 446 HRVGRTARIGAQGISVTICLENEVVKFKKMIRQSKQQLFKMIADTNKVRQMRRQIQQ--- 502

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRK---QMH 772
               + PQ +++ I E    +   +   T +     ++ + + +   ++   +K   QM 
Sbjct: 503 ----LEPQ-IRKVIKE---EVAEMEVRKTEMMTQKGEIPMEESEDDDNIPEPKKGKPQMK 554


>gi|91205891|ref|YP_538246.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii RML369-C]
 gi|157826748|ref|YP_001495812.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii OSU 85-389]
 gi|91069435|gb|ABE05157.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii RML369-C]
 gi|157802052|gb|ABV78775.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii OSU 85-389]
          Length = 411

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 75/214 (35%), Gaps = 10/214 (4%)

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L E    L   M  +     ++   +   ++ SAT     +   Q  +   +    G 
Sbjct: 143 TVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSATMPKHIISLSQKYLNNPVRITVGA 202

Query: 555 VDPPV-EIRSARTQVEDVYDEINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVR 610
            +    EI+     + D      L  Q G R   +++ V TKR A+ L + L   N +  
Sbjct: 203 TNKAAAEIKQESVHITDKEKFTELNKQLGDREGSVIIFVKTKRSADQLAKMLRYENHKAE 262

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H ++   +R  +I   R     ++V  ++   GLDIP    V   D            
Sbjct: 263 AIHGDLSQRQRDRVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYD-----LPMCPED 317

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
            +  IGR  R       L   +    I+  AID 
Sbjct: 318 YLHRIGRTGRAGAKGNALSFISPDDVIRWRAIDR 351


>gi|88603077|ref|YP_503255.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
           JF-1]
 gi|88188539|gb|ABD41536.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
           JF-1]
          Length = 531

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 74/192 (38%), Gaps = 17/192 (8%)

Query: 524 TTIVVSATPGSWELEQCQGI--------IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+++SAT     L+  +          +V Q +    +    +E+R    + + +   +
Sbjct: 180 QTVILSATFPPEILDISRRFQKNPIDVKMVHQELTVPQIEQYYIEVREPA-KADTLIRVL 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                Q  R ++   T+   + ++  L         +H  +   +R +++   R G+ ++
Sbjct: 239 EFY--QPQRTIIFCNTQIAVDAVSSALKAEGFLADGLHGGMAQAQRDKVMNAFRKGQLEI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           L+  ++   G+D+ E  LV   D     F +     +  IGR AR   +   I +     
Sbjct: 297 LIATDVAARGIDVEEIDLVCNFD-----FPQDDEYYVHRIGRTARAGRTGRAISFVSPRE 351

Query: 695 KSIQLAIDETTR 706
           +     +  +TR
Sbjct: 352 RYRLRDVRRSTR 363


>gi|77461504|ref|YP_351011.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77385507|gb|ABA77020.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 622

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 11/193 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGII--VEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +   ++ SAT      +    ++   E+I + P       +E R  R         +   
Sbjct: 184 KRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLAHL 243

Query: 579 AQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              G   ++L+   TK  A  L EYL +  +    +H       R + + D + G+  +L
Sbjct: 244 ITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEVRIL 303

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI +   V   +             +  IGR  R   S   I       +
Sbjct: 304 VATDIAARGLDIDQLPHVVNFE-----LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEE 358

Query: 696 SIQLAIDETTRRR 708
            +  +I+  T+++
Sbjct: 359 KLLKSIERMTKQK 371


>gi|58581173|ref|YP_200189.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623095|ref|YP_450467.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58425767|gb|AAW74804.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367035|dbj|BAE68193.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 634

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     K +  +I+ 
Sbjct: 311 GLDVERISHVLNYD-----IPYDTESYVHRIGRTGRAGRTGDAILFVTLREKGMLRSIER 365

Query: 704 TTRR 707
            TR+
Sbjct: 366 ATRQ 369


>gi|70938767|ref|XP_740015.1| eukaryotic initiation factor [Plasmodium chabaudi chabaudi]
 gi|56517431|emb|CAH80551.1| eukaryotic initiation factor, putative [Plasmodium chabaudi
           chabaudi]
          Length = 336

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 80/199 (40%), Gaps = 22/199 (11%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE---IRSARTQVE- 569
            +       ++ SAT     LE     +   V+ +++   L    ++   +   + Q + 
Sbjct: 131 RFLSPNTQIVLSSATLPQEVLEITNKFMHNPVKILVKRDELTLEGIKQFFVSIEKEQWKY 190

Query: 570 ----DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
               D+Y+ + +      + ++   TK   + L + + E N  V  MH+ +   ER +I+
Sbjct: 191 ETLADLYESLTIT-----QAVVFCNTKLKVDWLAKKMQESNFTVCKMHAGMSQSERDDIM 245

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R  K+ VL+  ++   GLD+ E  LV   D        S+ S I  IGR+ R     
Sbjct: 246 LKFRQCKYRVLISTDIWGRGLDVHEVSLVVNYD-----LPNSRESYIHRIGRSGRFGRKG 300

Query: 686 V-ILYADTITKSIQLAIDE 703
           V I +       I   I++
Sbjct: 301 VAINFVKNDDIKILRDIEQ 319


>gi|10039341|dbj|BAB13313.1| Vasa-related protein PlVAS1 [Dugesia dorotocephala]
          Length = 573

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             + L+ V +KRMA+     L     +   +H + +  +R   + D + G+ + +V  N+
Sbjct: 370 DEKTLIFVESKRMADFFGIKLGYLGFKATTIHGDREQEQRESALNDFKSGRINFMVATNV 429

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITK 695
              GLDIP+   V  +D        +  + +  IGR  R  N  + I + D    
Sbjct: 430 AARGLDIPKVDNVINID-----MPDTIDTYVHRIGRTGRCGNVGRAISFFDDQKD 479


>gi|3122189|sp|Q26696|DDX17_TRYBB RecName: Full=Putative DEAD-box RNA helicase HEL64
 gi|1166504|gb|AAC46964.1| HEL64 [Trypanosoma brucei]
          Length = 568

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 79/223 (35%), Gaps = 36/223 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTG-----LVDPPVEIRSARTQVEDVYDEIN-- 576
            T++ SAT    E+++      +Q IR +        +  V  R   TQ     DE+   
Sbjct: 281 QTVMFSAT-WPREIQRLAAEFQKQWIRISVGSTELQANKDVTQRFILTQEFAKQDELRKL 339

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +   +  R+L+    KR A++L   L         +H + +  +R  I+   R      L
Sbjct: 340 MQEHREERVLVFCKMKRTADELERQLRRWGYDAMAIHGDKEQRQREFILARFRKDPRLCL 399

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLDI +   V   D     F       +  IGR  R       +Y  T    
Sbjct: 400 VATDVAARGLDIKQLETVINYD-----FPMQIDDYVHRIGRTGRAGGEGRCVYLIT---- 450

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
                              K+  I P SV ++++ +++    E
Sbjct: 451 ------------------KKEAQITP-SVLKELIGILERAQQE 474


>gi|312898631|ref|ZP_07758021.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
 gi|310620550|gb|EFQ04120.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
          Length = 522

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 74/192 (38%), Gaps = 13/192 (6%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIR--PTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT P   +      +   QIIR     +    VE   I  A  Q  DV   +  
Sbjct: 184 QTLLFSATMPAPIQKLAETFLKDPQIIRMKAKEVTIDLVEQSYIEVADRQKFDVLCRLLD 243

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +  L  ++ V TKR  ++L+E L +R      +H ++   +R  +IR  R    D+LV
Sbjct: 244 LQEPDL-AIIFVRTKRRVDELSEGLKKRGYSAEGIHGDLTQAKRDSVIRQFREKTIDILV 302

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLDI     V   D       +   S +  +GR  R   S     +       
Sbjct: 303 ATDVAARGLDISGVTHVYNYD-----LPQDPESYVHRVGRTGRAGQSGEATTFVIPREID 357

Query: 697 IQLAIDETTRRR 708
               I++  + R
Sbjct: 358 HLRTIEKLIKHR 369


>gi|254561714|ref|YP_003068809.1| RNA helicase [Methylobacterium extorquens DM4]
 gi|254268992|emb|CAX24953.1| RNA helicase [Methylobacterium extorquens DM4]
          Length = 510

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R+L+   TK  A+ +   L + N+    +H      +R   +   R G   VLV  ++ 
Sbjct: 246 ERVLVFTRTKHGADRVVRGLDKANVVSAAIHGNKSQPQRERALAAFRDGSCRVLVATDIA 305

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAI 701
             G+D+     V   D           S +  IGR AR     + I + +   ++    I
Sbjct: 306 ARGIDVDGVTHVVNYD-----LPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI 360

Query: 702 DETTRRR 708
           + TTR++
Sbjct: 361 ERTTRQK 367


>gi|195498992|ref|XP_002096759.1| GE25850 [Drosophila yakuba]
 gi|194182860|gb|EDW96471.1| GE25850 [Drosophila yakuba]
          Length = 688

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 73/207 (35%), Gaps = 17/207 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            TI+ SAT  PG   L Q       Q+      +  T  V   +++     +        
Sbjct: 448 QTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIQLLEDDREKFSTIKSF 507

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   +I++    K  A+DL+  L       + +H      +R + I D++ G   +
Sbjct: 508 VRNMSNTDKIIIFCGRKARADDLSSDLTLDGFMTQCIHGNRDQSDREQAIADIKSGAVHI 567

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI +   V   D     F R+    +  +GR  R       +   T   
Sbjct: 568 LVATDVASRGLDIEDITHVINYD-----FPRNIEEYVHRVGRTGRAGRKGTSISFITRED 622

Query: 696 --SIQLAIDETTRRREKQLEHNKKHNI 720
               +  ID       +Q   ++ HN+
Sbjct: 623 WGMAKELIDILQE--AEQEVPDELHNM 647


>gi|73996610|ref|XP_862993.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 3 [Canis familiaris]
 gi|119578414|gb|EAW58010.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_a [Homo
           sapiens]
          Length = 634

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 405 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 464

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 465 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 522

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 523 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 577

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 578 AITFLTKEDSAVFYELKQAILES 600


>gi|85373802|ref|YP_457864.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
 gi|84786885|gb|ABC63067.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
          Length = 492

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 79/247 (31%), Gaps = 25/247 (10%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQ-------VEDVYD 573
            T+  SAT      EL         ++ + P       ++      Q       +E +  
Sbjct: 184 QTLFFSATMPKQIQELVGKYCRNPVKVSVTPAATTAERIDQYLFMVQQDEKQALIEMILK 243

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
             +    +  RIL+   TK  A+ + + L +  I    +H      +R   + + +  K 
Sbjct: 244 GRHAVPGKQERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEFKRAKT 303

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +L+  ++   G+DIP    V   +             +  IGR AR     V +     
Sbjct: 304 PILIATDVAARGIDIPGVSHVINYE-----LPNVPEQYVHRIGRTARAGKDGVAIAFC-- 356

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
                    E  R   K ++ N     +   + E    V++ +              +  
Sbjct: 357 --------AEDERAYLKDIQKNTDAEFDRLPLPENFRAVVEGVGPTKREQKQRGPRIKPK 408

Query: 754 SLSKKKG 760
             ++K+G
Sbjct: 409 PKARKQG 415


>gi|329575935|gb|EGG57456.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
           TX1467]
          Length = 457

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 13/192 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +        E + I+   +    ++   +RS   +  D+   +  
Sbjct: 118 QTLLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLD 177

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L   L  R  +   +H ++   +R+ ++R  + G  D+LV
Sbjct: 178 -VQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 236

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R       + +       
Sbjct: 237 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMG 291

Query: 697 IQLAIDETTRRR 708
               I+  T++R
Sbjct: 292 YLHVIENLTKKR 303


>gi|297160335|gb|ADI10047.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 478

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 17/157 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D    +   A +  R+++ + TKR  + LT++L    +R   +H      +R   +   +
Sbjct: 279 DKRTVVTRVAARDGRVIMFLDTKRAVDRLTKHLLASGVRAAALHGGKSQPQRTRTLDYFK 338

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ + +  LV  +D   +         +   GR AR   S  ++ 
Sbjct: 339 TGHVSVLVATNVAARGIHVDDLDLVVNVDPPAD-----HKDYLHRGGRTARAGGSGTVVT 393

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
                +   +A   T               I P + +
Sbjct: 394 LVLPDQRRAMAGLMT------------DAGITPHTAR 418


>gi|295676852|ref|YP_003605376.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295436695|gb|ADG15865.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 544

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 8/142 (5%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           R   + + D +   A    + ++   TK  A+ L   L +       +H ++    R   
Sbjct: 284 RDHKDRLLDHLL-RADGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRT 342

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           IR LR  +  VLV  ++   G+DIP    V   D  K          +  IGR  R   S
Sbjct: 343 IRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRS 397

Query: 685 KVILYADTITKSIQLAIDETTR 706
            + +    +  + Q A+    R
Sbjct: 398 GIAVSL--VHHAEQGALKRIER 417


>gi|222640394|gb|EEE68526.1| hypothetical protein OsJ_26968 [Oryza sativa Japonica Group]
          Length = 553

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 74/187 (39%), Gaps = 10/187 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L   L  R +    ++ +++  +R   I  L+ GK D+LV  ++   
Sbjct: 156 MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAAR 215

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+A    K +   I+ 
Sbjct: 216 GLDVERISHVLNYD-----IPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIER 270

Query: 704 TTRRREKQLEHNKKHNINPQSVKE---KIMEVIDPILLEDAATTNISIDAQQLSLSKKKG 760
            TR+  ++++      +N   + +   +I E +      D     +     + ++   + 
Sbjct: 271 ATRQPIEEMQLPSVEAVNDTRINKFTSRISETL-GTGGLDFYRQLLERFENEQNVPAIEI 329

Query: 761 KAHLKSL 767
            A L  +
Sbjct: 330 AAALARM 336


>gi|188581754|ref|YP_001925199.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
 gi|179345252|gb|ACB80664.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 506

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 69/195 (35%), Gaps = 15/195 (7%)

Query: 522 RPTTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           R  ++  SAT            L     + V  +      VD  V I       + + + 
Sbjct: 180 RRQSLFFSATMPKNIAGLADQYLTNPVQVAVTPVATTAERVDQQV-IFCHTGAKQALLNH 238

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +     +  R+L+   TK  A+ +   L +  I    +H      +R   +   R G   
Sbjct: 239 VL-RDPKIERVLVFTRTKHGADRVVRGLDKAGIVGAAIHGNKSQPQRERALAAFRDGSCR 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTI 693
           VLV  ++   G+D+     V   D           S +  IGR AR       I + +  
Sbjct: 298 VLVATDIAARGIDVEGVTHVVNYD-----LPNVPESYVHRIGRTARAGAEGMAISFCNDE 352

Query: 694 TKSIQLAIDETTRRR 708
            ++  L I+ TTR++
Sbjct: 353 ERAYLLDIERTTRQK 367


>gi|150019837|ref|YP_001312091.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149906302|gb|ABR37135.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 525

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 70/196 (35%), Gaps = 24/196 (12%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TKR  ++L + L  +   V  MH ++    R+  +   + G  ++L+  ++   
Sbjct: 246 AIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLNLLIATDVAAR 305

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+D+     V   D       +   S +  IGR  R   S       T      L     
Sbjct: 306 GIDVEGVTHVFNYD-----LPQDVESYVHRIGRTGRANKSGTAYSLVTPKDFSML----- 355

Query: 705 TRRREKQLEHNKKHNINPQSV-------KEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
                KQ+++  K +I  + V        +K  +++  +     A          + L++
Sbjct: 356 -----KQIQNVTKSSITQKPVPTAEEINNKKFKDMMSEVESTIKAGDLTKFIPSAIELTE 410

Query: 758 K-KGKAHLKSLRKQMH 772
                + + +L K M 
Sbjct: 411 SYDAVSIISALMK-MK 425


>gi|109896747|ref|YP_660002.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109699028|gb|ABG38948.1| ATP-dependent RNA helicase CsdA [Pseudoalteromonas atlantica T6c]
          Length = 579

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK    +L+E L  R   V  ++ ++    R   +  L+ GK D+LV  +++  
Sbjct: 249 VIIFVRTKTATMELSEKLSARGYAVEPLNGDIPQNSRERTVERLKRGKIDILVATDVVAR 308

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R       IL+     K +  +I+ 
Sbjct: 309 GLDVERVSHVINYDV-----PYDTESYVHRIGRTGRAGRQGDAILFISHREKRMLFSIER 363

Query: 704 TTRR 707
            TR+
Sbjct: 364 ATRQ 367


>gi|330502250|ref|YP_004379119.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328916536|gb|AEB57367.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 441

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 84/235 (35%), Gaps = 26/235 (11%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG--------SWELEQCQG 542
           F     + + GF      D + L           T++ SAT G        +  L++ Q 
Sbjct: 152 FDEADRMLDMGF----AEDAQRLAEACG---PHQTLLFSATTGGNGLREMVAKVLKEPQH 204

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           +++  + +        +         E + D +  A +   + ++   T+  A+ L   L
Sbjct: 205 LMLNSVSQLNEGTRQQIITADHNYHKEQLVDWLL-ANETYDKAIVFTNTRVQADRLYGKL 263

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
               ++   +H E    +R   I  LR G   VLV  ++   GLD+    LV   D  + 
Sbjct: 264 VAAGVKAFVLHGEKDQKDRKLAIERLRQGAVRVLVATDVAARGLDVEGLDLVINFDMPRS 323

Query: 663 GFLRSKTSLIQTIGRAARNVNSK----VILYADT-ITKSIQLAIDETTRRREKQL 712
           G        +  IGR  R         +I + D  +  SI+  + +   RR  + 
Sbjct: 324 G-----DEYVHRIGRTGRAGGEGLAVSLICHTDWNLMSSIERYLKQRFERRTIKE 373


>gi|301169611|emb|CBW29212.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810]
          Length = 415

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 90/252 (35%), Gaps = 34/252 (13%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +DE  V +         +  R   L   GF        R +R+    C 
Sbjct: 145 IDYV-KQGVIGLDEIQVVV-------LDEADRMFDL---GFI-------RDIRYLLRKCP 186

Query: 522 RPT---TIVVSATPGSWELEQCQGIIVE------QIIRPTGLVDPPVEIRSARTQVEDVY 572
            P    T++ SAT      E     + +      +  + TG      E+     Q +   
Sbjct: 187 APQARLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKE-ELFYPSNQDKMAL 245

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               +  +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G 
Sbjct: 246 LLTLMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTNGY 305

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
            D+LV  ++   GL I +   V   D         +   +  IGR  R   S V I +A 
Sbjct: 306 LDILVATDVAARGLHISDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFAC 360

Query: 692 TITKSIQLAIDE 703
                   AI+E
Sbjct: 361 EEYAMNLPAIEE 372


>gi|260598959|ref|YP_003211530.1| ATP-dependent RNA helicase SrmB [Cronobacter turicensis z3032]
 gi|260218136|emb|CBA32943.1| ATP-dependent RNA helicase srmB [Cronobacter turicensis z3032]
          Length = 444

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 78/233 (33%), Gaps = 36/233 (15%)

Query: 470 LLFVDESHVTI-----PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
            L +DE+   +       I  +      RK TL      L S         +    L   
Sbjct: 153 TLILDEADRMLDMGFAQDIETIAGETRWRKQTL------LFSATLEGDAIKDFAERLLEE 206

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL- 583
            + VSATP + E ++                            +E     +    +Q   
Sbjct: 207 PVEVSATPSTRERKKIHQWYYRA------------------DNIEHKTALLVHLLKQPEA 248

Query: 584 -RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++ V  +    +L   L +  I   Y+  E+  ++R E I+ L  G+ +VL+  ++ 
Sbjct: 249 TRSIVFVRKRERVHELANQLRQAGINNCYLEGEMVQVKRNEAIKRLTDGRVNVLIATDVA 308

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             G+DIP+   V   D  +     +  + +  IGR AR       +       
Sbjct: 309 ARGIDIPDVSHVINFDMPR-----TADTYLHRIGRTARAGRKGTAISLVEAHD 356


>gi|145295298|ref|YP_001138119.1| hypothetical protein cgR_1238 [Corynebacterium glutamicum R]
 gi|140845218|dbj|BAF54217.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 729

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++ V TK   E++ E L  R      ++ ++   +R   +  L+ G+ D+LV  ++ 
Sbjct: 342 EAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVA 401

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           S +  IGR  R   +   IL+     + +  +I
Sbjct: 402 ARGLDVERISHVLNFD-----IPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSI 456

Query: 702 DE 703
           + 
Sbjct: 457 ER 458


>gi|73952797|ref|XP_860793.1| PREDICTED: similar to nucleolar protein GU2 isoform 3 [Canis
           familiaris]
 gi|73952799|ref|XP_860823.1| PREDICTED: similar to nucleolar protein GU2 isoform 4 [Canis
           familiaris]
 gi|73952805|ref|XP_860916.1| PREDICTED: similar to nucleolar protein GU2 isoform 6 [Canis
           familiaris]
          Length = 673

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 39/256 (15%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 256 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 315

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 316 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 374

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 375 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 429

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 430 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 476

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 477 AVDFFRPSAQRLIEEK 492


>gi|19552380|ref|NP_600382.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|21323923|dbj|BAB98549.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
          Length = 732

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++ V TK   E++ E L  R      ++ ++   +R   +  L+ G+ D+LV  ++ 
Sbjct: 342 EAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVA 401

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           S +  IGR  R   +   IL+     + +  +I
Sbjct: 402 ARGLDVERISHVLNFD-----IPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSI 456

Query: 702 DE 703
           + 
Sbjct: 457 ER 458


>gi|117924535|ref|YP_865152.1| type III restriction enzyme, res subunit [Magnetococcus sp. MC-1]
 gi|117608291|gb|ABK43746.1| type III restriction enzyme, res subunit [Magnetococcus sp. MC-1]
          Length = 560

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 93/252 (36%), Gaps = 21/252 (8%)

Query: 451 GRNPGEPPPTL-----FEYIPEDSLLFVDESHVTIP-QISGMYRGDFHRKATLAEYGF-R 503
           GR      PTL      + +PE  LL +DE+H         +      R      YG   
Sbjct: 91  GRATFAMVPTLARQKNLDTMPELGLLVIDEAHHAAANSYRRIIDTALDRNPDCCIYGLTA 150

Query: 504 LPSCMDNRPLRFEEWNCLRPTT-IVVSATPGSWELEQCQGIIV-----EQIIRPTGLVDP 557
            P+  D + LR   ++ +     +    T G+    +   + V      + +R T     
Sbjct: 151 TPNRGDKKALR-PIFSNVADQVRLGELITAGNLVKPRTFVVDVGTQDALKSVRKTADDFD 209

Query: 558 PVEIRSARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
             E+     +       I    ++    + ++   T   A+++T+     ++    +H E
Sbjct: 210 MAEVSQIMNKAPVTEAVIKHWKEKAGTRKTIVFCSTVDHAQNVTDAFNNADVEAVMVHGE 269

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           + T ER   +     G   V+V + +L EG D P    V +L          K+++IQ +
Sbjct: 270 LTTAERKAALARFEKGSAMVVVNVAVLTEGYDHPPTSCVVLLRPSSY-----KSTMIQMV 324

Query: 676 GRAARNVNSKVI 687
           GR  R V+  + 
Sbjct: 325 GRGLRTVDPALF 336


>gi|312374635|gb|EFR22148.1| hypothetical protein AND_15703 [Anopheles darlingi]
          Length = 715

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 70/180 (38%), Gaps = 14/180 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-----DVYDEINLA 578
            T++ SAT         Q  + + I    G +D    + +    +E     D Y  I   
Sbjct: 470 QTVMTSATWPDGVRRLAQSYMHDPIQVYVGTLD-LAAVHTVTQHIECLDEEDKYHRIMKF 528

Query: 579 AQQ---GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +Q     ++++    K  A+DL+      +I  + +H   +  +R + + D++ G   +
Sbjct: 529 VKQMEPKDKVIIFCGKKTRADDLSSEFVLNDIGCQSIHGNREQADREQALEDIKKGTVRI 588

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   GLDI +   V   D     F R+    +  +GR  R   +   L   T + 
Sbjct: 589 LIATDVASRGLDIEDITHVVNYD-----FPRNIEEYVHRVGRTGRAGRTGTSLSFVTRSD 643


>gi|303277715|ref|XP_003058151.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460808|gb|EEH58102.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 413

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 75/192 (39%), Gaps = 17/192 (8%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPSKLQVGVFSATMPPEALEITRKFMTKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++   T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 DWKLDTLCDLYETLAIT--QSVIFANTRRKVDWLTDKMRARDFTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KVILYADTITKS 696
            V +   T    
Sbjct: 377 GVAINFVTKDDE 388


>gi|224069711|ref|XP_002326399.1| predicted protein [Populus trichocarpa]
 gi|222833592|gb|EEE72069.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 10/166 (6%)

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
            L    V +     ++  V D I    +   +I++ V TKR A  L   L E    V  +
Sbjct: 309 SLKQYKVILPDELAKIRVVKDRILELGENIGQIIIFVNTKRSASMLHTSLVELGYEVTTI 368

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS-- 670
           H  +   +R +I+++ + G   VL+  ++L  G D  +  LV   D   +   +S+    
Sbjct: 369 HGALNLEDRDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKYENQSEPHYE 428

Query: 671 -LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
             +  IGRA R      +         + +        R+ +   N
Sbjct: 429 VYLHRIGRAGRFGRKGAVFNFIMTDHDLMIM-------RKIESYFN 467


>gi|167753303|ref|ZP_02425430.1| hypothetical protein ALIPUT_01576 [Alistipes putredinis DSM 17216]
 gi|167659234|gb|EDS03364.1| hypothetical protein ALIPUT_01576 [Alistipes putredinis DSM 17216]
          Length = 476

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 78/190 (41%), Gaps = 12/190 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE--QIIRPTGLVDPPVEIRSA---RTQVEDVYDEINLA 578
            T++ SAT      +  + I+ +  ++       +  +E  +      Q   +  E+   
Sbjct: 182 QTLMFSATLPPKIRQMAKQILNDPAEVNIAISKPNEAIEQGAYICYEGQKLGIVREMFSW 241

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             +  + ++   +K+  ++L   L    + V  MHS++   +R +++ D +  K  +LV 
Sbjct: 242 PSES-KTIIFSSSKQKVKELAHTLKRMKLDVAPMHSDLDQEKREQVMLDFKNNKVRILVA 300

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSI 697
            +++  G+DI + G+V   D             I  IGR AR +   + + + +   +  
Sbjct: 301 TDIVARGIDIEDIGMVINYDV-----PHDPEDYIHRIGRTARASATGRAVTFVNEEEQGK 355

Query: 698 QLAIDETTRR 707
              I+E   R
Sbjct: 356 FHRIEEFIER 365


>gi|107099414|ref|ZP_01363332.1| hypothetical protein PaerPA_01000426 [Pseudomonas aeruginosa PACS2]
          Length = 624

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 11/193 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGII--VEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +   ++ SAT     ++    ++   E+I + P       +E R  R         +   
Sbjct: 169 KRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHL 228

Query: 579 AQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              G   ++L+   TK  A  L EYL +  +    +H       R + + D +     +L
Sbjct: 229 VTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRIL 288

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI +   V   +         +   +  IGR  R   S   I       +
Sbjct: 289 VATDIAARGLDIDQLPHVVNYE-----LPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEE 343

Query: 696 SIQLAIDETTRRR 708
            +  AI++ TR+R
Sbjct: 344 KLLKAIEKMTRQR 356


>gi|332304872|ref|YP_004432723.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172201|gb|AEE21455.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 576

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK    +L+E L  R   V  ++ ++    R   +  L+ GK D+LV  +++  
Sbjct: 249 VIIFVRTKTATMELSEKLSARGYAVEPLNGDIPQNSRERTVERLKRGKIDILVATDVVAR 308

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R       IL+     K +  +I+ 
Sbjct: 309 GLDVERVSHVINYDV-----PYDTESYVHRIGRTGRAGRQGDAILFISHREKRMLFSIER 363

Query: 704 TTRR 707
            TR+
Sbjct: 364 ATRQ 367


>gi|302552861|ref|ZP_07305203.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302470479|gb|EFL33572.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 490

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +D +      A +  R+++ + TK  A+ L + L    +R   +H      +R   +   
Sbjct: 297 DDKHATTTQIAARDGRVIMFLDTKHAADRLAKKLLAVGVRASALHGGKSQSQRTRTLARF 356

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G+  VLV  N+   G+ +    LV  +D   +         +   GR AR   S  ++
Sbjct: 357 KDGEVTVLVATNVAARGIHVDNLDLVVNVDPPGD-----HKDYLHRGGRTARAGESGTVV 411

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
                 +           RRE          I PQ
Sbjct: 412 TLVLPHQ-----------RREMTRLM-ADAGITPQ 434


>gi|302786878|ref|XP_002975210.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
 gi|300157369|gb|EFJ23995.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
          Length = 626

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 97/271 (35%), Gaps = 40/271 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
            T++ SAT  SW  E     I  + ++P       V  E   A   V+ +  +   +A+ 
Sbjct: 227 QTLLFSATMPSWVKE-----IATRFLKPNKKTVDLVGDEKMKASNNVKHLLLQCAYSARS 281

Query: 582 ------------GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                       G R+++   TK  A +L   L       R +H ++   +R   +   R
Sbjct: 282 QMIADVIKVYGSGGRVIVFTETKNDASELAGSLGTN--VARPLHGDIPQAQREHTLAGFR 339

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
             KF VLV  ++   GLDI +  L+      +    +   + I   GR  R  N+ + ++
Sbjct: 340 SAKFLVLVATDVAARGLDINDVQLII----QQCEPPKDVETYIHRSGRTGRAGNTGIAVM 395

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM-EVIDPILLEDAATTNIS 747
             D   + +   I+      +   +  K     P ++ ++     I  +     +     
Sbjct: 396 MFDRKKEYMIPMIEA-----KAGFKFEKITPPQPSTIAKESSFTAIKAVSAVSDSVVPFF 450

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
            +A +  +S  K  A        M L A  L
Sbjct: 451 KEAAEQLVSDCKRPA--------MELLAKAL 473


>gi|260771800|ref|ZP_05880718.1| ATP-dependent RNA helicase SrmB [Vibrio metschnikovii CIP 69.14]
 gi|260613092|gb|EEX38293.1| ATP-dependent RNA helicase SrmB [Vibrio metschnikovii CIP 69.14]
          Length = 411

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 75/211 (35%), Gaps = 19/211 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL-VDPPVEIRSARTQVEDVYDEINLA-- 578
           R  T++ SAT    E    +G   + +  P  +  +PP   R    Q     D +     
Sbjct: 180 RKQTLLFSAT---LEGRGVEGFTADLLNNPAEITAEPPRRERKKIAQWYHRADSMKHKLE 236

Query: 579 ------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                  QQ  R ++ + T+    +L   L    I   ++  E+    R   I   R G 
Sbjct: 237 LLKVILTQQAERSIVFIKTRERLAELRGELERAQIPCAWIQGEMPQDRRNNAISRFREGD 296

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            ++L+  ++   G+DIP+   V   D  +     S    +  IGR AR       +    
Sbjct: 297 INILLATDVAARGIDIPDVSHVINFDMPR-----SADVYLHRIGRTARAGKKGNAISLVE 351

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
               +   +D   R  +++++      + P 
Sbjct: 352 AHDQMM--MDRVARYVKEEIKERFIDGLRPT 380


>gi|224089849|ref|XP_002308835.1| predicted protein [Populus trichocarpa]
 gi|222854811|gb|EEE92358.1| predicted protein [Populus trichocarpa]
          Length = 556

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +G + ++   TKR A+ L  Y   +N +   +H ++    R   +   R G F++LV  
Sbjct: 310 AKGGKCIVFTETKRDADRLA-YAMAKNHKCEALHGDISQNVRERTLSGFREGHFNILVAT 368

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   GLD+P   L+           R   + +   GR  R       +   T   + Q+
Sbjct: 369 DVAARGLDVPNVDLII-----HYALPRCSETFVHRSGRTGRAGKKGTAILIYTQDDARQV 423

Query: 700 AIDE 703
            + E
Sbjct: 424 KLIE 427


>gi|254442945|ref|ZP_05056421.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257253|gb|EDY81561.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 436

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 77/211 (36%), Gaps = 22/211 (10%)

Query: 518 WNCLRPTTIVVSA-----TPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           ++   P  +V  A      P   ELE     +     R        V+  S    +  + 
Sbjct: 185 FSATFPQNVVSLANALLKDPVKIELEAASRPVESIAQRAI-----EVDGNSRTGLLRHLL 239

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +      +   R+L+ V +KR AE++T  L +  I+   +H  +   +R   +   +  K
Sbjct: 240 E-----TEGWERVLVFVGSKRRAENVTVKLQKHGIKAVALHGNMSQDKRARSLERFKQSK 294

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             VL+  ++   G+DI     V   D       RS    +  IGR  R   S + +   T
Sbjct: 295 VRVLMATDVAARGIDIAGLPCVVNYD-----LPRSAADYVHRIGRTGRAGESGLAVNFIT 349

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
             K     + E  ++   +LE  +     P+
Sbjct: 350 DDKDAHFRLIE--KKNGLRLERERLEGFVPE 378


>gi|167720206|ref|ZP_02403442.1| ATP-dependent RNA helicase [Burkholderia pseudomallei DM98]
          Length = 347

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I + Q I     +   V     R   + + D + 
Sbjct: 119 QTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLL 178

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                    ++   TK  A+ L   L +   +   +H ++    R   IR LR  +  VL
Sbjct: 179 RDVALDQ-AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVL 237

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 238 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 290

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 291 EQGALKRIER 300


>gi|167769379|ref|ZP_02441432.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM
           17241]
 gi|167668347|gb|EDS12477.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM
           17241]
          Length = 439

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 66/196 (33%), Gaps = 29/196 (14%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           +  T+  SAT     +  C  I+ + +          V +    + VE +   +    + 
Sbjct: 198 KRQTLFFSATMPKAIMHLCDRILTDPV---------KVAVTPVSSPVEAIEQRLYFVDKP 248

Query: 582 GLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
             R               L+   TK  A+ +   L +  I+ + +H +     R   +  
Sbjct: 249 NKRRLLIYLLEDVSIVSALVFTFTKHGADRVARELVKAGIKAQAIHGDKSQGARQRALSA 308

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + G   VLV  ++   G+DI E   V   D           + +  IGR  R     + 
Sbjct: 309 FKNGDIRVLVATDIAARGIDIDELSHVFNYD-----LPNIPETYVHRIGRTGRAGLGGIA 363

Query: 688 LYADTITK-SIQLAID 702
           +   +I +     AI+
Sbjct: 364 ISFCSIVEMENLHAIE 379


>gi|313227809|emb|CBY22958.1| unnamed protein product [Oikopleura dioica]
          Length = 862

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 72/202 (35%), Gaps = 12/202 (5%)

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           G+R+P     + L F       P TI   A    +   +   I V  +      V   V 
Sbjct: 513 GYRMPRPGKRKTLMFS---ATFPQTIQQFA--ADFMDSEYLFIKVGVVGGACADVSQEVL 567

Query: 561 IRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           I  +    +   + + I   A+   R L+ V TK  A+ +   L + N+    +H     
Sbjct: 568 IIGSEESKKSGKLEELIKEVAETRQRTLVFVETKIKADFIACMLSQTNVPTTSIHGGRLQ 627

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER   + D R G   +LV  ++   GLDIPE   V   +  +E         +  IGR 
Sbjct: 628 PERESALADFRSGVCPILVATSVAARGLDIPEVEHVINYELPRE-----IEEYVHRIGRT 682

Query: 679 ARNVNSKVILYADTITKSIQLA 700
            R  N           K   LA
Sbjct: 683 GRCGNLGKSTSFYDPEKDCHLA 704


>gi|242022822|ref|XP_002431837.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212517169|gb|EEB19099.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 630

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 92/238 (38%), Gaps = 28/238 (11%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRP--TTIVVS 529
            V+ S++T+  I+ +   +  R     + GF         P   +    +RP   +++ S
Sbjct: 361 LVNNSYITLSSITYIVLDEADRM---LDMGFE--------PQIRKLLLDIRPDRQSVMTS 409

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED---------VYDEINLAAQ 580
           AT  +      +  +   I    G +D    + S   +V           ++D +    +
Sbjct: 410 ATWPNDVQRLAKRYMSNPIQVFIGSLDLTA-VHSVLQRVYIINEGDKKSYLFDILRNLKE 468

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +  +I++ V  K MA+DL+  L       + +H   + ++R + + D + G   +L+  +
Sbjct: 469 EEDKIIVFVGKKNMADDLSCDLSLNRFMCQCIHGGREQMDREQALDDFKTGCVKILIATD 528

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           +   G+DI +   V   D     F  +    +  +GR  R   +   +   T +  + 
Sbjct: 529 VASRGIDISDITKVLNYD-----FPNNIEEYVHRVGRTGRAGKTGEAITFFTRSNWMH 581


>gi|119946798|ref|YP_944478.1| ATP-dependent RNA helicase RhlB [Psychromonas ingrahamii 37]
 gi|189040034|sp|A1SZG4|RHLB_PSYIN RecName: Full=ATP-dependent RNA helicase rhlB
 gi|119865402|gb|ABM04879.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 418

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 79/232 (34%), Gaps = 22/232 (9%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT--PGSWEL 537
           +  I  +   +  R   L   GF      D R L            ++ SAT      EL
Sbjct: 156 MGSIQSVVLDEADRMFDL---GFI----KDIRYLFRRMPEAKSRLNMLFSATLSHKVQEL 208

Query: 538 EQCQGIIVEQI-IRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQGL--RILLTVLTK 592
                   E I I P  +    +  E+     Q  D    +    ++    + ++   TK
Sbjct: 209 AFEHMNDPESIQIEPEVMTSVNITEELFYPSNQ--DKILLLLSLIEEDWPDKAIVFANTK 266

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
              E +  YL    +R   +  +V   +R++I++    G+ D+LV  ++   GL IP+  
Sbjct: 267 HTCEKVWGYLAGDGLRTGLLTGDVPQNKRLKILQQFTDGEIDILVATDVAARGLHIPKVS 326

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
            V   D             +  IGR  R       I +A         AI+E
Sbjct: 327 HVFNFD-----LPDDCEDYVHRIGRTGRAGEKGLAISFACEKYVFNLPAIEE 373


>gi|302788684|ref|XP_002976111.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
 gi|300156387|gb|EFJ23016.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
          Length = 597

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 7/133 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++     +G + ++   TKR  +D+   +  R+I    +H ++   +R + +   R 
Sbjct: 240 LLADLLTVYAKGGKAIVFTKTKRDTDDVAAVMS-RSIGCEALHGDISQYQREKTLSGFRD 298

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+F+VLV  ++   GLDIP   L+   +   +       + +   GR  R       +  
Sbjct: 299 GRFNVLVATDVAARGLDIPNVDLIVHYEVPGDS-----ETFVHRSGRTGRAGKKGTCILM 353

Query: 691 DTIT-KSIQLAID 702
            T+  K +   I+
Sbjct: 354 YTLNQKRVLRTIE 366


>gi|291166137|gb|EFE28183.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
          Length = 539

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 96/268 (35%), Gaps = 43/268 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDEINLA---- 578
            T++ SAT  +  L   +  +   ++IR                Q+E +Y ++  A    
Sbjct: 178 QTMLFSATMPAEILSLSKKYLKNPEMIRVKNKTMTV-------DQIEQIYMKVKNADKSE 230

Query: 579 -------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                   +   + ++   TK+M ++L   +  R   V  +H ++K  +R  ++   R G
Sbjct: 231 VLSRILQLESSKKAIIFCNTKKMVDELVVDMQNRGYAVEALHGDLKQQKRDMVLNRFREG 290

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +L+  ++   GLDI +  LV   D   E         I   GRA  +  S    Y  
Sbjct: 291 QISMLIATDVAARGLDIRDVDLVINYDLPIEE--EQYVHRIGRTGRAGASGKSYSFAYGR 348

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
            I         E  RR EK  +   K    P+   +K+ E I    +E   +   S D  
Sbjct: 349 DI---------ERLRRIEKYAKCKIKEESIPRY--DKVKEKIIHQYIEGIRSQKNSGDLD 397

Query: 752 QLSLSKKKGKAHLKSLRKQMHLAADNLN 779
                         +L  +M  +  NL 
Sbjct: 398 FYF-----------NLVSEMKQSGVNLE 414


>gi|190407035|gb|EDV10302.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|207345345|gb|EDZ72198.1| YGL078Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259146428|emb|CAY79685.1| Dbp3p [Saccharomyces cerevisiae EC1118]
          Length = 523

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 17/179 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI---------IRPTGLVDPPVEIRSARTQVEDVY 572
           +  T++ +AT      E     +   I         +     +   VE+   R +   + 
Sbjct: 287 KRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLL 346

Query: 573 DEINLA---AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           + +       ++  ++L+  L K+ A  +   L      V  +H ++   +R + + + +
Sbjct: 347 ELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFK 406

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            GK ++L+  ++   GLDIP    V  L      F  +    +  IGR  R   +    
Sbjct: 407 SGKSNLLLATDVAARGLDIPNVKTVINL-----TFPLTVEDYVHRIGRTGRAGQTGTAH 460


>gi|149375720|ref|ZP_01893489.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
 gi|149360122|gb|EDM48577.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
          Length = 441

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 71/208 (34%), Gaps = 14/208 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQG-----IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           +   ++ SAT  +      +G     + VE   R T        +     Q +       
Sbjct: 177 KRQNLLFSATFSNEIRTLAEGLLDNPVQVEVAARNTAAESIKQSVYPVD-QSQKTALLSK 235

Query: 577 LAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           L    G  ++L+   TK  A  LT+ L    I    +H       R   + D + G+  V
Sbjct: 236 LVRDNGWEQVLVFTRTKHGANRLTQKLERDGITAAAIHGNKSQGARTRALADFKQGEVRV 295

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI +   V   +             I   GRA  + ++  ++ AD    
Sbjct: 296 LVATDIAARGLDIKQLPQVVNFELP--NVPEDYVHRIGRTGRAGESGHALSLVSAD--EG 351

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQ 723
            +   I+   R  +KQL         P 
Sbjct: 352 KMLAGIE---RLIKKQLPRKSVEGFEPT 376


>gi|86750102|ref|YP_486598.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
 gi|86573130|gb|ABD07687.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
          Length = 516

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 15/196 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---------EDVYDE 574
            T+  +AT    E+ +     +    +          +  A++QV          +    
Sbjct: 179 QTLFFTAT-MPPEIRRVTETFLHNPEKIEVSKPASTAVTVAQSQVACGREPHEKRETLRS 237

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +  AA      ++    KR    L + L +    V  +H ++    R   +   R G+  
Sbjct: 238 LIRAATDLQNAIIFCNRKREVALLAKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELP 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   GLDIPE   V   D             +  +GR  R       +     +
Sbjct: 298 ILVASDVAARGLDIPEVSHVFNFDV-----PHHPDDYVHRVGRTGRAGRLGTAISIVAPS 352

Query: 695 KSIQLAIDETTRRREK 710
               +A  E    +E 
Sbjct: 353 DQKSIAAIEKLIGKEI 368


>gi|289668397|ref|ZP_06489472.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 460

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 29/226 (12%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSC---------MDNRPLRF-EEWNCL 521
            +D        +SG+          + + GF LPS           D + L F   +   
Sbjct: 136 LIDHIERRSVDLSGIEVLILDEADRMLDMGF-LPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLAA 579
                          LE  +  +  Q+  P+  V   +   +       +       LA 
Sbjct: 195 IKQLA----------LEFMRNPMQIQVT-PSNTVAESITHRVHPVDGARKRDLLLHLLAQ 243

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
               + L+   TK  ++ L  +L +  I+   +H      +R+  + D + G+  VLV  
Sbjct: 244 DSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVAT 303

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           ++   G+DI +   V   D             +  IGR  RN ++ 
Sbjct: 304 DIAARGIDIDQLPKVINYDLPMV-----AEDYVHRIGRTGRNGSTG 344


>gi|281347447|gb|EFB23031.1| hypothetical protein PANDA_001323 [Ailuropoda melanoleuca]
          Length = 613

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 384 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 443

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 444 PILVATAVSARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 490


>gi|256074311|ref|XP_002573469.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658649|emb|CAZ29701.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 879

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R+L+   TK+  ++L + L ++      MH +    ER   +   R G   VLV  ++
Sbjct: 321 NARVLVFTETKKRTDELCQKLQDKGFDATAMHGDKHQKERDRALDMFREGHISVLVATDV 380

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              GLDI +   +   D     +       I  IGR  R+         
Sbjct: 381 ASRGLDINDVRYIINYD-----YPSQTEDYIHRIGRTGRSDKKGTAYTF 424


>gi|227505531|ref|ZP_03935580.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940]
 gi|227197895|gb|EEI77943.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940]
          Length = 442

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 76/200 (38%), Gaps = 17/200 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGS-WELEQCQGIIVEQIIRPTG 553
            + + GF LP          E  +  +  T++ SAT PG    L +        I   +G
Sbjct: 171 EMLDLGF-LPDIEK----ILELLHGNKHQTMLFSATMPGPILTLARTFMNRPIHIRAESG 225

Query: 554 LVDPPVE-IRSARTQVE--DVYDEINLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIR 608
             +   E  R    Q    D    I+ A Q   R   ++   TKR A ++ + L  R  R
Sbjct: 226 DENQTHESTRKVTFQAHRMDKLAIISRALQAKGRGKTIIFARTKRSAAEVADELARRGFR 285

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
           V  +H ++    R + +   R GK ++LV  ++   G+D+ +   V              
Sbjct: 286 VGAVHGDLGQAAREKSLNAFREGKVEILVATDVAARGIDVDDVTHVINYQV-----PDDP 340

Query: 669 TSLIQTIGRAARNVNSKVIL 688
            + +  IGR  R  ++   +
Sbjct: 341 MTFVHRIGRTGRAGHTGTAV 360


>gi|255071997|ref|XP_002499673.1| hypothetical protein MICPUN_106753 [Micromonas sp. RCC299]
 gi|226514935|gb|ACO60931.1| hypothetical protein MICPUN_106753 [Micromonas sp. RCC299]
          Length = 413

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 75/192 (39%), Gaps = 17/192 (8%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPSKLQVGVFSATMPPEALEITRKFMTKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++   T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLDTLCDLYETLAIT--QSVIFANTRRKVDWLTDKMRARDFTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KVILYADTITKS 696
            V +   T    
Sbjct: 377 GVAINFVTKDDE 388


>gi|171473669|ref|YP_001798539.1| putative helicase [Acidianus filamentous virus 9]
 gi|170779999|gb|ACB37255.1| putative helicase [Acidianus filamentous virus 9]
          Length = 561

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
                L+ V   R AE L++   E  I   ++ S+    ERI+ I  L+ GK  VL+  +
Sbjct: 425 NKYPALVIVRRIRHAELLSKMFDESGINADWVSSKTNLEERIQKIEALKNGKLQVLISTS 484

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           L  EGLDIP   LV +L   K     S+  LIQ IGR  R    K   Y   I  + ++ 
Sbjct: 485 LADEGLDIPNLRLVVLLSQGK-----SRIKLIQRIGRVMRPAKQKEKGYVLDINYAHEIF 539

Query: 701 IDETTRR 707
             +  +R
Sbjct: 540 AKQKMKR 546


>gi|167919550|ref|ZP_02506641.1| ATP-dependent RNA helicase [Burkholderia pseudomallei BCC215]
          Length = 390

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I + Q I     +   V     R   + + D + 
Sbjct: 119 QTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLL 178

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                    ++   TK  A+ L   L +   +   +H ++    R   IR LR  +  VL
Sbjct: 179 RDVALDQ-AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVL 237

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 238 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 290

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 291 EQGALKRIER 300


>gi|156839635|ref|XP_001643506.1| hypothetical protein Kpol_473p7 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114120|gb|EDO15648.1| hypothetical protein Kpol_473p7 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 478

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 1/114 (0%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L +   +V  +H ++++ ER  +I D R G+  VL+  N+L  G
Sbjct: 330 IIFVSTKKTANLLYAKLKQEGHQVSILHGDLQSTERDRLIDDFREGRSKVLITTNVLARG 389

Query: 646 LDIPECGLVAILDADKEGFLRSKTS-LIQTIGRAARNVNSKVILYADTITKSIQ 698
           +DIP   +V   D       ++  +  I  IGR  R     V +      KS Q
Sbjct: 390 IDIPTVSMVVNYDLPTSLNGQADPATYIHRIGRTGRFGRKGVAISFVHDKKSYQ 443


>gi|62390044|ref|YP_225446.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|41325380|emb|CAF19860.1| Superfamily II DNA and RNA helicase [Corynebacterium glutamicum
           ATCC 13032]
          Length = 732

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++ V TK   E++ E L  R      ++ ++   +R   +  L+ G+ D+LV  ++ 
Sbjct: 342 EAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVA 401

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           S +  IGR  R   +   IL+     + +  +I
Sbjct: 402 ARGLDVERISHVLNFD-----IPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSI 456

Query: 702 DE 703
           + 
Sbjct: 457 ER 458


>gi|115474897|ref|NP_001061045.1| Os08g0159900 [Oryza sativa Japonica Group]
 gi|75328149|sp|Q84UQ1|RH42_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 42
 gi|29467560|dbj|BAC66730.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|37806159|dbj|BAC99664.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113623014|dbj|BAF22959.1| Os08g0159900 [Oryza sativa Japonica Group]
 gi|218200507|gb|EEC82934.1| hypothetical protein OsI_27901 [Oryza sativa Indica Group]
 gi|222639953|gb|EEE68085.1| hypothetical protein OsJ_26125 [Oryza sativa Japonica Group]
          Length = 1049

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 64/174 (36%), Gaps = 13/174 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGL------VDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P   E+   + +     I+  G       +   VE+R    +   + + + 
Sbjct: 607 QTVLFSATFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPENERFFRLLELLG 666

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               +G +IL+ V ++   + L + L++       +H      +R   + D +     +L
Sbjct: 667 EWFDKG-KILVFVHSQDKCDSLLKDLFQHGYPCLSLHGGKDQTDRESTLADFKSNVCSLL 725

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           +  ++   GLD+ E  LV   D             +  +GR  R       +  
Sbjct: 726 IATSVAARGLDVKELELVVNYDV-----PNHYEDYVHRVGRTGRAGRKGFAVTF 774


>gi|290894075|ref|ZP_06557049.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J2-071]
 gi|290556419|gb|EFD89959.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J2-071]
          Length = 470

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 84/250 (33%), Gaps = 27/250 (10%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            +   +  SAT    E++       +  +      +    I     Q ++    +     
Sbjct: 171 KQRQNLFFSAT-MPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEMQTDNKEKTLKDVLI 229

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +     ++   TK   ++LT+ L   +++   +H  ++  +R   + D + GK   L+ 
Sbjct: 230 TENPDSAIIFCNTKNQVDELTDLL---DVKANKIHGGLRQEDRFRAMDDFKSGKSRFLIA 286

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            ++   G+D+    LV   D   E     K + +  IGR  R   S K I +  T    +
Sbjct: 287 TDVAGRGIDVDNVSLVINYDLPIE-----KENYVHRIGRTGRAGKSGKAISFVKTNENPL 341

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
              I+E                I     K++   VI+    EDA                
Sbjct: 342 LRDIEEM-----------LDVTIE----KKRKPTVIEVKANEDAFRKKQQKRPTIKKARG 386

Query: 758 KKGKAHLKSL 767
           +K   ++  L
Sbjct: 387 EKLNKNIMKL 396


>gi|227206264|dbj|BAH57187.1| AT4G16630 [Arabidopsis thaliana]
          Length = 617

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 103/280 (36%), Gaps = 40/280 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDV 571
            R  T++ SAT  + E+++   + + + +R         P GL +  V IR  R   ++ 
Sbjct: 281 KRRQTMLFSAT-MTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEA 339

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       ++++   TK+ A  L        ++   +H  +   +R++ +   R  
Sbjct: 340 VLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQ 399

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYA 690
           + D L+  ++   GLDI     V      +E       S +  +GR AR       + + 
Sbjct: 400 EVDFLIATDVAARGLDIIGVQTVINYACPRE-----IDSYVHRVGRTARAGREGYAVTFV 454

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
               +S+   I        K++    K  + P+    K  ++ID   +ED  +  IS + 
Sbjct: 455 TDSDRSLLKVI-------AKKVGSKLKSRVIPEQSIVKWSQIIDE--MEDQYSAVISAER 505

Query: 751 QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            + +L K + +         M               RDEI
Sbjct: 506 DERALRKAEMEFAKAE---NMLEH------------RDEI 530


>gi|296446324|ref|ZP_06888270.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
 gi|296256225|gb|EFH03306.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
          Length = 419

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 74/244 (30%), Gaps = 31/244 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++         D   + +  I  +   +  R     + GF  P     R  +  
Sbjct: 129 TPGRLLDFF--------DRGKLLLTNIEILVIDEADRM---LDMGFI-PDI--ERICKLV 174

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP--TGLVDPPVEIR----SARTQVE- 569
            +      T+  SAT    E+ +     +   +R            IR    +     E 
Sbjct: 175 PF---TRQTLFFSAT-MPPEITRLTEAFLHNPVRIEVARASSTAATIRQALVATHGHAEK 230

Query: 570 -DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            +    +   A+     ++    KR    L   L +       +H ++    R+  +   
Sbjct: 231 RETLRRLLRGAENFKNAIIFCNRKRDVAILHRSLDKHGFSAGALHGDMDQPARMASLDAF 290

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G   +LV  ++   GLDIP+   V   D             +  IGR  R   S   +
Sbjct: 291 KNGDVALLVCSDVAARGLDIPDVSHVFNFDV-----PTHSEDYVHRIGRTGRAGRSGTAV 345

Query: 689 YADT 692
              T
Sbjct: 346 TLVT 349


>gi|294875456|ref|XP_002767330.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239868893|gb|EER00048.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 364

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 5/114 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++   +    E L + + E      Y+H+ +    R  +  D R G    LV  +L 
Sbjct: 229 NQAIIFCNSVTRVELLAKKITELGFSCFYIHARMYQSHRNRVFHDFRNGACRCLVSSDLF 288

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
             G+DI    +V   D     F ++  + +  IGR+ R  +  + +   T    
Sbjct: 289 TRGIDIENVNVVINFD-----FPKNSETYLHRIGRSGRFGHLGIAINMLTYDDR 337


>gi|114794734|pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
          Length = 417

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 268 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 327

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 328 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 374


>gi|163943135|ref|YP_001648019.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|163865332|gb|ABY46391.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 481

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 70/185 (37%), Gaps = 11/185 (5%)

Query: 525 TIVVSAT-PGSWE-LEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINL--AA 579
           T++ SAT P   E L +        I I+ TG+    +E      + E+    +      
Sbjct: 180 TMLFSATLPKDVEKLSRTYMDSPTHIEIKATGITTDKIEHTLFEMKEEEKLSLLKDVTTI 239

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +     ++   T+   + + + L   N     +H  +   +R E++ D R GKF  LV  
Sbjct: 240 ENPDSCIIFCRTQENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQ 698
           ++   G+DI     V   D   E     K S +   GR  R  N+ K I +         
Sbjct: 300 DVAARGIDIDNITHVINYDIPLE-----KESYVHRTGRTGRAGNNGKAITFMTPYENRFL 354

Query: 699 LAIDE 703
             I+E
Sbjct: 355 EEIEE 359


>gi|332139978|ref|YP_004425716.1| ATP-dependent RNA helicase RhlB [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550000|gb|AEA96718.1| ATP-dependent RNA helicase RhlB [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 429

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 83/266 (31%), Gaps = 46/266 (17%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNR 511
           + +Y  ++          ++  I      +  R   L   GF         R+P   +  
Sbjct: 145 ILDYYKQNVF--------SLKNIQVAVLDEADRMFDL---GFIKDIRFLFRRMPPAGERL 193

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            + F      R   +                 +  +    T +         +    +D 
Sbjct: 194 SMLFSATLSYRVQELAYEHMNNP-----THVQVAPEQTTATRVSQEL--FYPSD---DDK 243

Query: 572 YDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
              +    ++    + ++   TK   E +T++L     RV  +  +V   +R+ I+ D  
Sbjct: 244 MLLLLTLLEEEWPEKAIVFANTKHSCEKVTDWLTADGHRVGLLSGDVPQKKRLGILEDFT 303

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            GK DVLV  ++   GL I     V   D             +  IGR  R   S + I 
Sbjct: 304 KGKLDVLVATDVAARGLHIDAVTHVFNYD-----LPDDAEDYVHRIGRTGRAGQSGIAIS 358

Query: 689 YADT--------ITKSIQLAIDETTR 706
           +A          I + IQ AI  T  
Sbjct: 359 FACEKYALNLPAIEQYIQNAIPVTDY 384


>gi|84385387|ref|ZP_00988419.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
           12B01]
 gi|84379984|gb|EAP96835.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
           12B01]
          Length = 443

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 64/172 (37%), Gaps = 12/172 (6%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR-----TQVEDVYDEI 575
            R  T++ SAT    E+      +++   R +  V     +   +       ++     +
Sbjct: 178 RRRQTLMFSATLDHAEVNGIANEMLDAPKRISVGVSNEQHLDITQKFYLCDHLDHKEAIL 237

Query: 576 NLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +   ++    ++++   T+   + LT+ L E+ ++   +   +   +R  I+       +
Sbjct: 238 DRVIEEAEYRQVMIFTATRADTDRLTDKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVY 297

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV  ++   G+DIP    V   D  K          +  +GR  R  N  
Sbjct: 298 KILVTTDVASRGIDIPNVSHVINFDMPK-----HTEEYVHRVGRTGRAGNKG 344


>gi|113970505|ref|YP_734298.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885189|gb|ABI39241.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 487

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 78/244 (31%), Gaps = 34/244 (13%)

Query: 496 TLAEYGFR---------LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIV 545
            + + GF          LP    N  L F      +   +  SA P + E+E   +    
Sbjct: 158 RMLDMGFIEDINSIIEKLPEQRQN--LLFSATLSKQVKALAKSAIPDAIEIEISRKSAAS 215

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL--RILLTVLTKRMAEDLTEYLY 603
             I +    VD            +     ++   Q+    + L+ + TK  A  L   L 
Sbjct: 216 THIDQWLTTVDK-----------DKKSALLSHLIQENNWSQALIFIQTKHGAAKLVSQLE 264

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +R I     HS      R +++ D + GK   LV   +   G+DI     V   D   E 
Sbjct: 265 KRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFLVATGVASRGIDIDALARVINYDLPDE- 323

Query: 664 FLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
                   I  IGR  R  N    I +          AI+   RR    +   +     P
Sbjct: 324 ----ADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIE---RRLGHVIVRREIAGFEP 376

Query: 723 QSVK 726
           + + 
Sbjct: 377 KKIV 380


>gi|325001026|ref|ZP_08122138.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
          Length = 416

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 86/239 (35%), Gaps = 33/239 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLP---SCMDNRPL 513
            P  L +++ + +    D S VTI  +    R        +A+ GF LP     +D  P 
Sbjct: 132 TPGRLTDHLQQGTC---DLSEVTITALDEADR--------MADMGF-LPQVRGILDRTPS 179

Query: 514 RFEEWNCLRPTTIVVSATPGSWE----LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
                       ++ SAT                +   +  PT  VD          + +
Sbjct: 180 D--------GQRLLFSATLDGEVDTLVRRHLTDPVTRSVAPPTASVDTMEHHVLVVGK-D 230

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D    I   A +  R ++ V TK  A+ +   L  + +    +H      +R   + + R
Sbjct: 231 DRSRVIAEIAAREGRTIMFVRTKHGADRMVRVLRRQGVAAGPLHGGRSQNQRNRALDEFR 290

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+  VL+  ++   G+ I + GLV  +D   +       + +   GR AR     V++
Sbjct: 291 TGEVPVLIATDVAARGIHIDDVGLVVHVDPPAD-----PKAYLHRAGRTARAGEEGVVV 344


>gi|281202503|gb|EFA76705.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1173

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 93/257 (36%), Gaps = 24/257 (9%)

Query: 524  TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS-----ARTQVEDVYDEINLA 578
             T++ SAT  +   +     I    I         VE  S        Q +D +    L 
Sbjct: 836  QTLLYSATMTNSNKKLESIPIKNPYIFEDNNKYDTVETLSQYYVFMPAQAKDCHLVYLLK 895

Query: 579  AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                  +++ +   R  E +   L + +I+   +HS +   +R+  ++  + GK  VL+ 
Sbjct: 896  KHDSSSVIVFINNCRTVEAVKGMLNKLDIKSVSLHSFLSQKDRLNALKQFKSGKIRVLIA 955

Query: 639  INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
             ++   GLDIP+  +V            S    I  +GR AR   S   I +       +
Sbjct: 956  TDVASRGLDIPDVQMVINYK-----LSNSSKDYIHRVGRTARFGRSGRAISFVTPHDVEL 1010

Query: 698  QLAIDETTRRREKQLE-HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
               ++       KQLE +  +     ++V   + E      L       I +D  +  + 
Sbjct: 1011 VKNVEAAI---GKQLELYTTE----DEAVYRHLGEASTARKL-----VEIYLDEIEFGVK 1058

Query: 757  KKKGKAHLKSLRKQMHL 773
            +K+ +     L +QM  
Sbjct: 1059 EKERRDERNELTRQMLD 1075


>gi|294875454|ref|XP_002767329.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239868892|gb|EER00047.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 447

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 5/114 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++   +    E L + + E      Y+H+ +    R  +  D R G    LV  +L 
Sbjct: 312 NQAIIFCNSVTRVELLAKKITELGFSCFYIHARMYQSHRNRVFHDFRNGACRCLVSSDLF 371

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
             G+DI    +V   D     F ++  + +  IGR+ R  +  + +   T    
Sbjct: 372 TRGIDIENVNVVINFD-----FPKNSETYLHRIGRSGRFGHLGIAINMLTYDDR 420


>gi|46447193|ref|YP_008558.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400834|emb|CAF24283.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 515

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 10/183 (5%)

Query: 518 WNCLRPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-EDVYDEI 575
           +   +  T++ SAT P + +    Q +     I  T       +I+     + ED  D+ 
Sbjct: 179 FLPAKRQTLLFSATMPSAIQKLAHQILKKPIFISVTQKETTNKDIKQVYYVIREDERDDA 238

Query: 576 NLA---AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            L    +++  + ++   TK+  + L+  L       R +H +++  +R E+IR  R  +
Sbjct: 239 ILRLLDSEEPAKSIIFCRTKKDVDRLSTTLVANGYHARGLHGDMEQPQREEVIRHFRSEQ 298

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             VLV  ++   GL + +   V               S +  IGR  R  N  V     T
Sbjct: 299 IRVLVATDVAARGLSVSDVSHVFNYH-----LPFDPASYVHRIGRTGRAGNKGVASTFVT 353

Query: 693 ITK 695
           + +
Sbjct: 354 LRE 356


>gi|323357599|ref|YP_004223995.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323273970|dbj|BAJ74115.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 746

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 7/141 (4%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D    ++    +  + L+   T+  AE L E   E  I    +H ++   +R   +  L 
Sbjct: 586 DKAQILDSLVDRDGKTLVFARTRAYAEMLAEQFDEAGIAAVALHGDLNQQKRTRNLEKLT 645

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+ +VLV  ++   G+ + +  LV   DA  E       + +   GR  R   S  ++ 
Sbjct: 646 SGRVNVLVATDVAARGIHVDDIDLVIQADAPDE-----YKTYLHRSGRTGRAGRSGTVVT 700

Query: 690 ADTITKSIQLAIDETTRRREK 710
              IT+  Q  + E   R E 
Sbjct: 701 L--ITRQRQRRMTELLDRAEI 719


>gi|307331747|ref|ZP_07610851.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306882613|gb|EFN13695.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 1097

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 73/194 (37%), Gaps = 18/194 (9%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-----DVYDEI 575
           +  T++ SAT PG       + +     IR T   D    + +    V      D  + +
Sbjct: 222 KRQTMLFSATMPGQVISLARRYMSQPTHIRATAPDDEGATVANITQHVFRAHSMDKPEVV 281

Query: 576 NLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
               Q   R  +++   TKR A D+ + L  R      +H ++    R + +R  R GK 
Sbjct: 282 ARVLQADGRGLVMIFCRTKRTAADIADQLARRGFASGAVHGDLGQGAREQALRAFRNGKV 341

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
           DVLV  ++   G+D+     V    +        + + +  IGR  R   S + I   D 
Sbjct: 342 DVLVCTDVAARGIDVEGVTHVINYQS-----PEDEKTYLHRIGRTGRAGASGIAITLVDW 396

Query: 693 ITKS----IQLAID 702
                   I  A+D
Sbjct: 397 DDIPRWQLINKALD 410


>gi|219114457|ref|XP_002176399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402645|gb|EEC42635.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 575

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 65/181 (35%), Gaps = 11/181 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV--------EDVYDEI 575
            T++ SAT            +   I    G V+  V  +  +  +         D  ++I
Sbjct: 320 QTLLFSATWPKEIQALAHDFLKNPIQINVGEVNALVANKDIQQTIVMCSESEKLDKLEQI 379

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G +I++ V  K    DL   L+E    V  +H +    ER  +++  + G+  V
Sbjct: 380 LRDLMHG-KIIVFVAKKISCNDLANRLWEDGFAVDSLHGDRPQWERTRVMQAFKGGQLRV 438

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   GLD+ + G+V   D      +      +  IGR  R  N        T   
Sbjct: 439 LIATDVAARGLDVKDVGVVVNYDMPSG--VNGVEDYVHRIGRTGRAGNKGKAYTFFTQGD 496

Query: 696 S 696
            
Sbjct: 497 R 497


>gi|160940589|ref|ZP_02087933.1| hypothetical protein CLOBOL_05484 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436549|gb|EDP14316.1| hypothetical protein CLOBOL_05484 [Clostridium bolteae ATCC
           BAA-613]
          Length = 490

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 10/169 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIR-SARTQVEDVYDEINLAA 579
           +  T++ SAT         +  + + + +      + P+ IR S     +D         
Sbjct: 184 KRQTLLFSATLDEDVKNLAEETVKDAVSVFLEQEGETPLPIRQSVYGVAQDQKYTAFKRV 243

Query: 580 ---QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +   R ++   T+ M + L + L    I    +H +++  ER++ +   R G F  L
Sbjct: 244 LMKENPERAMIFCGTREMVQVLFQKLRRDRIFCGMIHGDMEQKERLKNVDAFRRGGFRYL 303

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +  ++   G+D  + GLV   D     F   + + +  IGR  RN  + 
Sbjct: 304 IATDVAARGIDFEDVGLVVNYD-----FPMGRETYVHRIGRTGRNGKAG 347


>gi|15222526|ref|NP_174479.1| STRS1 (STRESS RESPONSE SUPPRESSOR 1); ATP binding / ATP-dependent
           helicase/ helicase/ nucleic acid binding [Arabidopsis
           thaliana]
 gi|75333350|sp|Q9C551|RH5_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 5
 gi|12321302|gb|AAG50723.1|AC079041_16 p68 RNA helicase, putative [Arabidopsis thaliana]
 gi|12321459|gb|AAG50784.1|AC074309_1 RNA helicase, putative [Arabidopsis thaliana]
 gi|19347812|gb|AAL86356.1| putative p68 RNA helicase [Arabidopsis thaliana]
 gi|21436171|gb|AAM51373.1| putative p68 RNA helicase [Arabidopsis thaliana]
 gi|332193302|gb|AEE31423.1| DEAD-box ATP-dependent RNA helicase 5 [Arabidopsis thaliana]
          Length = 537

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 15/186 (8%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIR-PTGLVDP--------PVEIRSARTQVED 570
                 ++ SAT      +  Q  +    I+   G VD          +E+   R + + 
Sbjct: 294 NKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQR 353

Query: 571 VYDEINLA-AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           +   +      Q  R+L+  L K  AE L  +L +R  +   +H      ER   +   +
Sbjct: 354 LIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFK 413

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   +LV  ++   GLDIP+  +V         F  +    +  IGR  R     V   
Sbjct: 414 EGSCPLLVATDVAARGLDIPDVEVVINY-----TFPLTTEDYVHRIGRTGRAGKKGVAHT 468

Query: 690 ADTITK 695
             T   
Sbjct: 469 FFTPLN 474


>gi|291618455|ref|YP_003521197.1| SrmB [Pantoea ananatis LMG 20103]
 gi|291153485|gb|ADD78069.1| SrmB [Pantoea ananatis LMG 20103]
          Length = 442

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 69/184 (37%), Gaps = 18/184 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVEDVYDEINLAAQ 580
           R  T++ SAT    E E  +      +  P  L   P    R    Q     D++    +
Sbjct: 181 RKQTMLFSAT---LEGEHIKDFAERLLNEPVELEADPSRRERKKIQQWYHRADDLEHKTK 237

Query: 581 ---------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                    +  R ++ V  +    +L  +L++  IR  Y+  E+   +R E I+ L  G
Sbjct: 238 LLVHLLKQPEVTRSIVFVRKRERLHELVSWLHDAGIRTSYLEGEMVQAKRNEAIKRLVEG 297

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           + +VLV  ++   G+D+ +   V   D  +     +  + +  IGR  R     + +   
Sbjct: 298 RVNVLVATDIAARGIDVDDVSHVINFDMPR-----TADTYLHRIGRTGRAGRKGIAISLV 352

Query: 692 TITK 695
               
Sbjct: 353 EAHD 356


>gi|223993165|ref|XP_002286266.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977581|gb|EED95907.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 480

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 70/182 (38%), Gaps = 15/182 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----------PTGLVDPPVEIRSARTQVEDVYD 573
            T++ SAT    E+++     +   I+              +   + + S   +++ + +
Sbjct: 230 QTLLFSAT-WPKEIQRLAFDFLSDPIQINVGEINVLNANKDITQKIMMCSEDDKIDRLKE 288

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +        ++++ V  K +A +L   L++    V  +H + +  ER ++I   + G  
Sbjct: 289 ILTDLKHS--KVIVFVGKKYVAHELANQLWDEGFAVDSLHGDREQWERTKVINAFKQGTL 346

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +L+  ++   GLD+ + G+V   D      +      I  IGR  R     +     T 
Sbjct: 347 RLLIATDVAARGLDVKDVGVVVNYDMP--VGVNGAEDYIHRIGRTGRAGAKGIAYTMFTP 404

Query: 694 TK 695
             
Sbjct: 405 GD 406


>gi|121704948|ref|XP_001270737.1| DEAD/DEAH box RNA helicase, putative [Aspergillus clavatus NRRL 1]
 gi|119398883|gb|EAW09311.1| DEAD/DEAH box RNA helicase, putative [Aspergillus clavatus NRRL 1]
          Length = 584

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 1/113 (0%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TK  A+ L ++LY   +    +HS+    ER + +R  R  +  +LV   +  
Sbjct: 397 RTLIFVNTKTQADFLDDFLYNMGLPSTSIHSDRTQREREDALRAFRTARCPILVATGVSA 456

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            GLDI     V   D          T  I  IGR AR  N  +         +
Sbjct: 457 RGLDIKNVMHVINFDLPS-VMHGGITEYIHRIGRTARIGNEGLATSFYNDRNA 508


>gi|24372003|ref|NP_716045.1| ATP-dependent RNA helicase RhlB [Shewanella oneidensis MR-1]
 gi|32363323|sp|Q8EJQ5|RHLB_SHEON RecName: Full=ATP-dependent RNA helicase rhlB
 gi|24345864|gb|AAN53490.1|AE015489_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 439

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 76/231 (32%), Gaps = 36/231 (15%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLR 522
            +D     I  ++ +          + + GF         R+P+      + F     ++
Sbjct: 145 IIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQRLNMLFSATLSMK 204

Query: 523 PTTIVVS--ATPGSWEL---EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
              +       P   E+   E+    I E+I  P+                ED    +  
Sbjct: 205 VQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQ---------------EDKMRLLLT 249

Query: 578 AAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             ++    + ++   TK   E+L  +L     RV  +  +V   +RI I+     G+ D+
Sbjct: 250 LIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDI 309

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           LV  ++   GL I +   V   D             +  IGR  R  N  V
Sbjct: 310 LVATDVAARGLHISDVSHVYNYD-----LPDDCEDYVHRIGRTGRAGNKGV 355


>gi|310800761|gb|EFQ35654.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 530

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 75/226 (33%), Gaps = 35/226 (15%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           +++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 215 QFHPKDRQVMLFSATFPLSVKDFSDKNMVSPYEINLMDELTLRGITQYYAFVEEKQKVH- 273

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+++    R  
Sbjct: 274 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNR 325

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 326 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRYGH 380

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +          L   E     E Q          P S+ + +
Sbjct: 381 LGLAINLINWDDRFNLYNIEKDLGTEIQ--------PIPASIDKSL 418


>gi|289192981|ref|YP_003458922.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
           FS406-22]
 gi|288939431|gb|ADC70186.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
           FS406-22]
          Length = 362

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 72/207 (34%), Gaps = 32/207 (15%)

Query: 510 NRPLRFEEWNCLRPTTIVVSATP--GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           NR  R   ++   P  I+  A    G +   + +            +    +E+      
Sbjct: 171 NRDKRILLFSATMPREILNLAKKYMGDYSFIKAKINA--------NIEQSYIEVNEN--- 219

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            E       +   +    L+   TK+  ++L   L +   +   +H ++   +R ++IR 
Sbjct: 220 -ERFEVLCRILKNKDFYGLVFCKTKKDTKELANMLRDIGFKAGAIHGDLNQSQREKVIRL 278

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            +  +  +L+  +++  G+D+ +   V           ++  S +  IGR  R       
Sbjct: 279 FKQKRIKILIATDVMSRGIDVNDLNCVINYH-----LPQNPESYMHRIGRTGRAGKKG-- 331

Query: 688 LYADTITKSIQLAIDETTRRREKQLEH 714
                       AI    RR  K+L++
Sbjct: 332 -----------KAISIINRREYKKLKY 347


>gi|260912300|ref|ZP_05918851.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260633601|gb|EEX51740.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 447

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 11/194 (5%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            TI+ SAT  P   +L +       +I          +  ++           +    + 
Sbjct: 183 QTIMFSATMPPKIEQLAKTLLKNPVEIKLAVSKPAEKIAQKAYLCYEPQKLKVLQDIFKA 242

Query: 582 G--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           G   R+++    K+  +++   L    +    MHS++   ER  ++   + G  DVLV  
Sbjct: 243 GSLNRVIIFSGKKQKVKEINRALVRMKVNSDEMHSDLSQEERDRVMFKFKSGATDVLVAT 302

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++L  G+DI +  +V   D   +         +  IGR AR     V +   +       
Sbjct: 303 DILSRGIDIDDITMVINYDVPHDV-----EDYVHRIGRTARAERDGVAITLISDQDVYYF 357

Query: 700 AIDETTRRREKQLE 713
              +  R  EK +E
Sbjct: 358 --QQIERFLEKDIE 369


>gi|3047077|gb|AAC13590.1| contains similarity to the conserved C-terminal domain of helicases
           (Pfam: helicase_C.hmm, score: 90.11), similar to
           DEAD-box h [Arabidopsis thaliana]
          Length = 477

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 9/137 (6%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++     +G + ++   TKR A++++  L   +I    +H ++   +R   +   R 
Sbjct: 342 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALS-NSIATEALHGDISQHQRERTLNAFRQ 400

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           GKF VLV  ++   GLDIP   LV               + +   GR  R         A
Sbjct: 401 GKFTVLVATDVASRGLDIPNVDLVI-----HYELPNDPETFVHRSGRTGRAGKEGS---A 452

Query: 691 DTITKSIQLAIDETTRR 707
             +  S Q     +  R
Sbjct: 453 ILMHTSSQKRTVRSLER 469


>gi|311276036|ref|XP_003135023.1| PREDICTED: probable ATP-dependent RNA helicase DDX53-like [Sus
           scrofa]
          Length = 630

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 89/241 (36%), Gaps = 49/241 (20%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            TI+ SAT      +     + E ++   G +D           V+ V   I +  ++  
Sbjct: 404 QTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVA--------VDTVKQNIIITTEEEK 455

Query: 584 R---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           R               +++ V  K +A+DL+  L  + I V+ +H + +  +R   + D 
Sbjct: 456 RSLFQEFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDF 515

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV------ 682
           + GK  +L+  +L   GLD+ +   V   +     F R+    +  +GR  R        
Sbjct: 516 KTGKVKILIATDLASRGLDVSDVTHVFNYN-----FPRNIEEYVHRVGRTGRAGKMGESV 570

Query: 683 ------NSKVILYADTITKSIQLAIDET------TRRREKQLEHNKKHNINPQSVKEKIM 730
                 + KV      I +    +I E         +  KQ    K+    P++ +EK  
Sbjct: 571 TLMTQDDWKVAGELIEILQRANQSIPEDLLSMAEQYKLHKQE---KETGKKPRTPQEKFR 627

Query: 731 E 731
           E
Sbjct: 628 E 628


>gi|24375277|ref|NP_719320.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24350080|gb|AAN56764.1|AE015812_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 535

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 9/197 (4%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT      E  +G++   VE  + P       V+  I       +       
Sbjct: 178 KRQNLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALLIQL 237

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +  +   ++L+   TK  A  L + L +  I    +H       R + + D + G+  VL
Sbjct: 238 IKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI--T 694
           V  ++   GLDI +   V   D             I   GRA     +  ++ ++ I   
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLP--NVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLL 355

Query: 695 KSIQLAIDETTRRREKQ 711
           K I+  I+    R+E +
Sbjct: 356 KDIERLINRVLERQEVE 372


>gi|302536730|ref|ZP_07289072.1| ATP-dependent RNA helicase [Streptomyces sp. C]
 gi|302445625|gb|EFL17441.1| ATP-dependent RNA helicase [Streptomyces sp. C]
          Length = 596

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   I  A  +GL  ++   TKR A D+ E L  R      +H ++    R + +R  R
Sbjct: 304 ELVSRILQAEGRGL-AMIFCRTKRTAADIAEQLERRGFASGAVHGDLGQGAREQALRAFR 362

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            GK DVLV  ++   G+D+     V             + + +  +GR  R  N    +
Sbjct: 363 NGKVDVLVCTDVAARGIDVEGVTHVINYQT-----PEDEKTFLHRVGRTGRAGNKGTAV 416


>gi|297157473|gb|ADI07185.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 587

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 66/188 (35%), Gaps = 24/188 (12%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
                   + AT    E       I + + R   L  P V  R            +  A 
Sbjct: 174 RYMSQPTHIRATAPDDEGA-TVANITQHVFRAHSLDKPEVVAR------------VLQAE 220

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +GL +++   TKR A D+ + L  R      +H ++    R + +R  R GK DVLV  
Sbjct: 221 GRGL-VMIFCRTKRTAADIADQLAHRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVAT 279

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS-- 696
           ++   G+D+     V    +        + + +  IGR  R   S   I   D       
Sbjct: 280 DVAARGIDVEGVTHVINYQS-----PEDEKTYLHRIGRTGRAGASGTAITLVDWDDIPRW 334

Query: 697 --IQLAID 702
             I  A+D
Sbjct: 335 QLINKALD 342


>gi|145347521|ref|XP_001418212.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578441|gb|ABO96505.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 419

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 27/208 (12%)

Query: 518 WNCLRPTTIVVSAT-PG------------SWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           +       ++ SAT P              + +   + + ++ I +    V+   ++   
Sbjct: 214 FMAKNRQILLYSATFPVTVKDFKDKYLRKPYVINLMEELTLKGITQYYAFVEEKQKVH-- 271

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
                   + +    Q    I +   +    E L   + E      Y+H+++    R  +
Sbjct: 272 ------CLNTLFSKLQINQSI-IFCNSVTRVELLARKITELGYSCFYIHAKMIQAHRNRV 324

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
             D R G    LV  +L   G+DI    +V   D     F ++  + +  +GR+ R  + 
Sbjct: 325 FHDFRNGACRNLVSSDLFTRGIDIQSVNVVINFD-----FPKNSETYLHRVGRSGRFGHL 379

Query: 685 KVILYADTITKSIQLAIDETTRRREKQL 712
            + +   T    + L   E     E Q 
Sbjct: 380 GIAVNLITYDDRMNLFRIEQELGTEIQQ 407


>gi|58269456|ref|XP_571884.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134114169|ref|XP_774332.1| hypothetical protein CNBG3130 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256967|gb|EAL19685.1| hypothetical protein CNBG3130 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57228120|gb|AAW44577.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 615

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 76/217 (35%), Gaps = 17/217 (7%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
                 + + GF      D R +           T++ SAT      +  Q  ++  I+ 
Sbjct: 343 MDEADRMIDMGFE----EDVRSIMSHFKYQR--QTLLFSATMPRKIQDFAQQSLINPILV 396

Query: 551 PTGL-----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
             G      +D   E+   + Q   +   +    +    +++    K   +D+ EYL  +
Sbjct: 397 NVGRAGAANMDVIQEVEYVK-QEAKMVYLLECLQKTPPPVIIFSDNKNEVDDIQEYLLLK 455

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            I    +H      ER   IR  + G  DV+V   +  +GLD  E   V +    KE   
Sbjct: 456 GIEAVAIHGSKTQEEREYAIRSFKTGAKDVMVASGVASKGLDFNEIQHVIVYSMPKE--- 512

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
                 +  IGR  R+  + +      +  S Q  +D
Sbjct: 513 --IEDYVHEIGRTGRSGKTGLATTFVNMNTSEQTLLD 547


>gi|257896496|ref|ZP_05676149.1| helicase [Enterococcus faecium Com12]
 gi|257833061|gb|EEV59482.1| helicase [Enterococcus faecium Com12]
          Length = 503

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 13/192 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +          + I+   +    ++   +R+   +  D+   +  
Sbjct: 176 QTLLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L   L  R  R   +H ++   +R+ ++R  + G  D+LV
Sbjct: 236 -VQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R       + +       
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMD 349

Query: 697 IQLAIDETTRRR 708
               I+  T++R
Sbjct: 350 YLHVIENLTKKR 361


>gi|254502530|ref|ZP_05114681.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
 gi|222438601|gb|EEE45280.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
          Length = 430

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 68/197 (34%), Gaps = 20/197 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT--PGSWELEQC-----QGIIVEQI 548
            + + GF       +   +          T++ SAT      EL Q        + V  +
Sbjct: 160 QMLDLGFI------HALRKIAGLVAKDRQTLLFSATMPKQINELAQSYLTDPARVEVSPV 213

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
            R    V   V    ++ +   + D ++   Q     L+   TK  AE L   + +  I 
Sbjct: 214 GRTADKVRQKVHFMDSKAKTGFLIDVLSD--QPDDMSLVFCRTKHGAERLMRKMAQAGIA 271

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H      +R   I++LR G   VLV  ++   G+DIP    V   +          
Sbjct: 272 AGSIHGNKSQNQRERAIKELRSGAIKVLVATDVAARGIDIPGVSHVYNFE-----LPEVA 326

Query: 669 TSLIQTIGRAARNVNSK 685
            + +  IGR AR     
Sbjct: 327 EAYVHRIGRTARAGADG 343


>gi|209550473|ref|YP_002282390.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209536229|gb|ACI56164.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 567

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 66/190 (34%), Gaps = 12/190 (6%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVEDVYDEI 575
            +  T++ SAT      +     +V+ +   + P G     VE  +     + +      
Sbjct: 179 KKRQTMLFSATMPKAIADLAGDYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLR 238

Query: 576 NLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               +    R ++ + TK  AE L ++L      V  +H      +R   ++  R G   
Sbjct: 239 KSLTENPDGRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 298

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
            L+  ++   G+DIP    V   D           + +  IGR AR     + I +    
Sbjct: 299 TLIATDVAARGIDIPAVSHVYNYD-----LPEVPDAYVHRIGRTARAGRDGIAIAFCAPD 353

Query: 694 TKSIQLAIDE 703
              +   I+ 
Sbjct: 354 EAKLLRDIER 363


>gi|190573462|ref|YP_001971307.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a]
 gi|190011384|emb|CAQ44999.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a]
          Length = 654

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L   L  R +    ++ +++  +R   I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+A    K +   I+ 
Sbjct: 311 GLDVERISHVLNYD-----IPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIER 365

Query: 704 TTRR 707
            TR+
Sbjct: 366 ATRQ 369


>gi|116626579|ref|YP_828735.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116229741|gb|ABJ88450.1| DEAD/DEAH box helicase domain protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 422

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 76/202 (37%), Gaps = 26/202 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT     LE     +VE  +R    ++     + +  QV+    E++   + GL
Sbjct: 179 QTLLFSAT-----LESSVKQLVETHVRNAVRIELGSISKPSE-QVDLHLYEVDQDRKFGL 232

Query: 584 ----------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                       L+   TK  A+ L + L +   +   +H +    +RI+ ++  + G +
Sbjct: 233 LEMMLREEQGSFLVFARTKHGADKLAKKLAQSGFKSAAIHGDRSQNQRIQALKGFQEGYY 292

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI-LYADT 692
            VLV  ++   G+ +     V   D       +     I  +GR  R         +A  
Sbjct: 293 RVLVATDVAARGIHVEGISHVVNFD-----LPQVPEDFIHRVGRTGRAGAKGTASTFATR 347

Query: 693 ITKSIQLAIDET----TRRREK 710
             +S    I+ T     +RRE 
Sbjct: 348 SERSEIGRIERTLSVKLKRREV 369


>gi|116511209|ref|YP_808425.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116106863|gb|ABJ72003.1| Superfamily II DNA and RNA helicase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 551

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 99/250 (39%), Gaps = 11/250 (4%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT P   +    + +   + I+     +    ++    +T+  + +D +     
Sbjct: 176 QTLLFSATMPADIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLLD 235

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++   TKR  ++L   L  R  R   MH ++   +R+ ++RD + G  DVLV 
Sbjct: 236 VERPQLAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLD+     V   D       + + S +  IGR  R   S   + +        
Sbjct: 296 TDVAARGLDVSGVTHVYNYDIT-----QDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGY 350

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
             AI++ T +  K L+   K      S+   + +V+  +  E         D Q  SL +
Sbjct: 351 LRAIEKLTNKEMKGLKPPTKEEAYQASLSVAMDDVLRDLSDESGKAKLAKFDKQAASLLE 410

Query: 758 KKGKAHLKSL 767
           K     L +L
Sbjct: 411 KFDAKELVAL 420


>gi|283457687|ref|YP_003362273.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133688|dbj|BAI64453.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 574

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +++   I  A  +G R ++   TKR A  + E L  R      +H ++  + R + ++  
Sbjct: 253 DEMIGRILRATGRG-RTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAF 311

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           R GK D+LV  ++   G+D+ +   V             + + +   GR  R  N    +
Sbjct: 312 RTGKVDILVATDVAARGIDVEDVTHVINHRV-----PEDEKTYLHRTGRTGRAGNEGTAV 366

Query: 688 LYADTITKSIQLAID 702
              D         I+
Sbjct: 367 TLVDWDDLPRWKVIN 381


>gi|227550862|ref|ZP_03980911.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
           TX1330]
 gi|257887886|ref|ZP_05667539.1| helicase [Enterococcus faecium 1,141,733]
 gi|257893315|ref|ZP_05672968.1| helicase [Enterococcus faecium 1,231,408]
 gi|293379275|ref|ZP_06625421.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
 gi|227179960|gb|EEI60932.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
           TX1330]
 gi|257823940|gb|EEV50872.1| helicase [Enterococcus faecium 1,141,733]
 gi|257829694|gb|EEV56301.1| helicase [Enterococcus faecium 1,231,408]
 gi|292642071|gb|EFF60235.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
          Length = 503

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 13/192 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +          + I+   +    ++   +R+   +  D+   +  
Sbjct: 176 QTLLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L   L  R  R   +H ++   +R+ ++R  + G  D+LV
Sbjct: 236 -VQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R       + +       
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMD 349

Query: 697 IQLAIDETTRRR 708
               I+  T++R
Sbjct: 350 YLHVIENLTKKR 361


>gi|226229135|ref|YP_002763241.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
           T-27]
 gi|226092326|dbj|BAH40771.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
           T-27]
          Length = 594

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +Q    ++   T+   ++L+E L  R +R   +H  +   +R  +++  R  K D+L+ 
Sbjct: 256 IEQPTSAIVFCRTRTEVDELSETLTARGLRAEALHGGLSQDQRDRVMQKFRARKVDLLIA 315

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   GLD+     V   D   +       + +  IGR  R     V + +A+     +
Sbjct: 316 TDVAARGLDVKHVSHVVNFDVPVD-----AETYVHRIGRTGRAGREGVAVTFAEPRENRL 370

Query: 698 QLAIDE 703
              I+ 
Sbjct: 371 LRNIER 376


>gi|222149464|ref|YP_002550421.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
 gi|221736447|gb|ACM37410.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
          Length = 484

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 84/255 (32%), Gaps = 31/255 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L + I  +++     +H+ + +              + + GF      D R  +  
Sbjct: 148 TPGRLLDLISRNAISLRAVTHLVLDEAD-----------QMLDLGFI----HDLR--KIA 190

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVEDV 571
           +    +  T++ SAT      +     +   +   + P G     VE  +     Q    
Sbjct: 191 KMVPAKRQTLLFSATMPKAIADLAGSFLNNPVTVEVSPPGKAADKVEQYVHFVNGQ-NHK 249

Query: 572 YDEINLAAQQ--GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + +          R ++ + TK  AE L ++L      V  +H      +R   ++  R
Sbjct: 250 TELLKKTLADHPDGRSIVFLRTKHGAEKLMKHLEITGFSVASIHGNKSQGQRERALKGFR 309

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G    L+  ++   G+DIP    V   D           + +  IGR AR     + I 
Sbjct: 310 DGSIRTLIATDVAARGIDIPAVSHVFNYD-----LPEVPDAYVHRIGRTARAGRDGIAIA 364

Query: 689 YADTITKSIQLAIDE 703
           +       +   I+ 
Sbjct: 365 FCGPDEARLLRDIER 379


>gi|153000529|ref|YP_001366210.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151365147|gb|ABS08147.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 467

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 81/239 (33%), Gaps = 28/239 (11%)

Query: 555 VDPPVEIRSART-----QVEDVYDEINLAAQQG-----------LRILLTVLTKRMAEDL 598
           V+ PVEI  AR      Q++     ++   +              + L+ + TK+ A  L
Sbjct: 200 VENPVEIEIARDSANAPQIDQWLITVDKDKKSALLSKLITEQAWEQALIFIQTKQGAAKL 259

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
              L +R I    +HS      R +++ D + GK   LV   +   G+DI     V   D
Sbjct: 260 VSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFLVATGVASRGIDIDALTRVVNYD 319

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRREKQLEHNKK 717
              E         I  IGR  R       I +          AI+   RR    +   + 
Sbjct: 320 LPDE-----ADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCAIE---RRLGHIIVRKEI 371

Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
               P    +++   I   + ++         A +   S+   +   ++   + H +A 
Sbjct: 372 EGFVP---NKEVPVSILDFVPKNTTPKTFKARAPEAKTSRPAKEGSFETAHAKKHRSAK 427


>gi|241888947|ref|ZP_04776251.1| competence protein FA [Gemella haemolysans ATCC 10379]
 gi|241864196|gb|EER68574.1| competence protein FA [Gemella haemolysans ATCC 10379]
          Length = 512

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 27/198 (13%)

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-------VYDEINLA 578
           + +SATP S  ++     +++  IR    + P  +I+  + +V D       +   I   
Sbjct: 312 VFLSATP-SEIVKSSVDEVIKIPIRYHRYLLPVPKIKIEKLEVFDFSRKSRFLEKFIKEK 370

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK-------TLERIEIIRDLRLG 631
            ++  RIL+ V    M E    Y        +Y+  E+K          R E I+     
Sbjct: 371 LKKDRRILIFVPEIGMCETAVIYFK------KYISEEIKIDFVYSGDENRSEKIKKFYNR 424

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK---VIL 688
           + D+L+   +L  G+       V + DA    F  +K +LIQ  GR  R        V+ 
Sbjct: 425 ELDILITTTILERGVTFDYLD-VVVFDAKHANF--TKAALIQISGRVGRKDYDNLGDVVF 481

Query: 689 YADTITKSIQLAIDETTR 706
            AD+I++ ++ AI E   
Sbjct: 482 LADSISRDMKAAIKEIEY 499


>gi|119492913|ref|XP_001263731.1| DEAD/DEAH box RNA helicase, putative [Neosartorya fischeri NRRL
           181]
 gi|119411891|gb|EAW21834.1| DEAD/DEAH box RNA helicase, putative [Neosartorya fischeri NRRL
           181]
          Length = 584

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 1/113 (0%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TK  A+ L ++LY   +    +HS+    ER + +R  R  +  ++V   +  
Sbjct: 395 RTLIFVNTKTQADFLDDFLYNMGLPSTSIHSDRTQREREDALRSFRSARCPIMVATGVSA 454

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            GLDI     V   D          T  I  IGR AR  N  +         S
Sbjct: 455 RGLDIKNVMHVVNFDLPSATHG-GITEYIHRIGRTARIGNEGLATSFYNDRNS 506


>gi|294054382|ref|YP_003548040.1| transcription-repair coupling factor [Coraliomargarita akajimensis
           DSM 45221]
 gi|293613715|gb|ADE53870.1| transcription-repair coupling factor [Coraliomargarita akajimensis
           DSM 45221]
          Length = 1133

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 85/229 (37%), Gaps = 28/229 (12%)

Query: 252 NEQIDR--MRHSATRSLLE--RNDCIVVSSVSCIYGIGSVESYSQMIV-QLKIGDSVEQK 306
           N + DR   R +   +LL+  R   +++++   + G     +  +    QL++GD     
Sbjct: 82  NRRADRVCQRLAVLSTLLQPSRGKRLLIATPEALLGSCPPRAQFEAQQIQLQVGDEHSFS 141

Query: 307 ELLSSL-VKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYP 365
            L+  L  +  Y  + +    G     G  ++I+P +  +  +R+  FG++IE I  F P
Sbjct: 142 ALVERLSTELDYDVEALCEHPGQMATRGGLLDIYP-YDANEPYRIDFFGDEIESIRSFDP 200

Query: 366 LTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR 425
            + + +  V ++ I A           +  +          L  L  +      +     
Sbjct: 201 ASQRSLEPVSSLSIAAAIGNTQQNQHSDGNL----------LDYLPSDNLHWILEDPALL 250

Query: 426 ITYDLEMLETTGSCQS-IENYSR----------YLTGRNPGEPPPTLFE 463
           I       E   S    I NY R          +LTG    +  P+LF+
Sbjct: 251 IREHPLRFEQNRSPVGPIRNYQRALNSRNGSGDHLTGICEIDSSPSLFD 299



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 22/201 (10%)

Query: 525 TIVVSATPGS--WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-----VYDEINL 577
            + +SATP      L       +  I  P      PV+ R  +T V       +   I  
Sbjct: 727 ILTLSATPIPRTLYLAMAGARAMSVIETP------PVDRRPIQTVVRSYDPALIKSAIQA 780

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERN--IRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              +G ++          E +   + E +  + V   H ++      +I+     G+FDV
Sbjct: 781 ETDRGGQVFYLHNRVGTIEGVANQIREMHPKLNVAVGHGQMTEGALEKIMTKFVAGEFDV 840

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV   ++  G+DIP C  + I  AD+ G  +    L Q  GR  R        YA  +  
Sbjct: 841 LVCTTIIESGIDIPNCNTLIIEGADRFGLAQ----LYQIRGRVGRFKQQ---AYAYLLLH 893

Query: 696 SIQLAIDETTRRREKQLEHNK 716
                +D+  +R     +HN+
Sbjct: 894 RHAALVDQAQKRLNALKQHNQ 914


>gi|326315975|ref|YP_004233647.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372811|gb|ADX45080.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 491

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 93/263 (35%), Gaps = 29/263 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         ++  +  + Q+  +   +  R     + GF LP        R  
Sbjct: 136 TPGRLLD--------HIEAKNAVLNQVEYVVLDEADRM---LDIGF-LPDLQ-----RIL 178

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVY 572
            +     TT++ SAT            +      ++ RP       VE R      +D  
Sbjct: 179 SYLPKTRTTLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETAST-VEQRFYSVNDDDKR 237

Query: 573 DEINL--AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             I+     +   +  + V +K     L+  L    ++   +H +    ER++ +   + 
Sbjct: 238 RAIHHVLRTRGVKQAFVFVNSKLGCARLSRTLEREGLKAAALHGDKSQDERLKALDAFKR 297

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+ D+LV  ++   GLDI +   V   D        +    +  IGR  R   S + +  
Sbjct: 298 GEVDLLVCTDVAARGLDIKDVPAVFNFDVPF-----NAEDYVHRIGRTGRAGASGLAVTL 352

Query: 691 DTITKSIQLAIDETTRRREKQLE 713
            + + +  +A  E   +++  LE
Sbjct: 353 VSSSDARLVADIEKLTKKKIDLE 375


>gi|301106324|ref|XP_002902245.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
 gi|262098865|gb|EEY56917.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
          Length = 2680

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 27/225 (12%)

Query: 554 LVDPPVEIR---SARTQVEDVYDEINLAA-QQGLRILLTVLTKRMAEDLTEYLYERNI-- 607
           LV+ P+E         +V  V + I  A      R ++ V  ++ A  L + +   ++  
Sbjct: 557 LVNFPLETFTGTDISNRVHLVAECIRRANFDHNSRAIVFVRRRKTAILLAKAMEALDVLR 616

Query: 608 ---RVRYMHSEVKTLERIE-----IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
                R++          E      +   R G+  +LV  N+L EGLD+PEC LV   D 
Sbjct: 617 ELNPTRFVGHNSYEGMSWEEEQRPTLDRFRQGRIRLLVATNVLEEGLDVPECSLVIQFDG 676

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
                +   TSLIQ+ GR AR+ +S  I++   + K     + E  +R    + +     
Sbjct: 677 -----VIGVTSLIQSRGR-ARHRDSSFIIFCSAVGKERNQRLVENEKRLVL-MANKAAAR 729

Query: 720 INPQSVKEKIME------VIDPILLEDAATTNISIDAQQLSLSKK 758
           +N ++  E++M        +DP +  +  T+ ++  A   +++ K
Sbjct: 730 LNSKATVEELMGSYSEDMAVDPSVAANEETSALAARATFDAMADK 774


>gi|256269719|gb|EEU04989.1| Dbp3p [Saccharomyces cerevisiae JAY291]
          Length = 523

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 17/179 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI---------IRPTGLVDPPVEIRSARTQVEDVY 572
           +  T++ +AT      E     +   I         +     +   VE+   R +   + 
Sbjct: 287 KRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLL 346

Query: 573 DEINLA---AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           + +       ++  ++L+  L K+ A  +   L      V  +H ++   +R + + + +
Sbjct: 347 ELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFK 406

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            GK ++L+  ++   GLDIP    V  L      F  +    +  IGR  R   +    
Sbjct: 407 SGKSNLLLATDVAARGLDIPNVKTVINL-----TFPLTVEDYVHRIGRTGRAGQTGTAH 460


>gi|6321360|ref|NP_011437.1| Dbp3p [Saccharomyces cerevisiae S288c]
 gi|1708151|sp|P20447|DBP3_YEAST RecName: Full=ATP-dependent RNA helicase DBP3; AltName: Full=DEAD
           box protein 3; AltName: Full=Helicase CA3
 gi|172582|gb|AAA73137.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|1322595|emb|CAA96783.1| DBP3 [Saccharomyces cerevisiae]
 gi|285812127|tpg|DAA08027.1| TPA: Dbp3p [Saccharomyces cerevisiae S288c]
          Length = 523

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 17/179 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI---------IRPTGLVDPPVEIRSARTQVEDVY 572
           +  T++ +AT      E     +   I         +     +   VE+   R +   + 
Sbjct: 287 KRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLL 346

Query: 573 DEINLA---AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           + +       ++  ++L+  L K+ A  +   L      V  +H ++   +R + + + +
Sbjct: 347 ELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFK 406

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            GK ++L+  ++   GLDIP    V  L      F  +    +  IGR  R   +    
Sbjct: 407 SGKSNLLLATDVAARGLDIPNVKTVINL-----TFPLTVEDYVHRIGRTGRAGQTGTAH 460


>gi|114330892|ref|YP_747114.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas
           eutropha C91]
 gi|114307906|gb|ABI59149.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
          Length = 455

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 78/232 (33%), Gaps = 32/232 (13%)

Query: 490 DFHRKATLA--EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
           DF R   L   E    L     +   R          T++ SAT             +E+
Sbjct: 145 DFSRLEMLVLDEADRMLDMGFIHDVERIASSTPTNRQTLLFSAT---------LDTAIEK 195

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR---------------ILLTVLTK 592
           I      +   ++I S   +++ +   ++       +                ++   TK
Sbjct: 196 IATRLLKMPKRIQIASQHAKLDHIEQRMHYVDDLTHKNRLLDHLLCDTTIKQAIVFTATK 255

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R A+ L + L  +  +   MH ++   ER   +  LR G+  +LV  ++   G+DI +  
Sbjct: 256 RDADSLADNLSAQGHKAAAMHGDMTQRERTRTLTGLRQGRLKILVATDVAARGIDIADIT 315

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
            V   D  K          +  IGR  R   S + + +A          I+ 
Sbjct: 316 HVINFDLPKF-----AEDYVHRIGRTGRAGASGIAVSFASGKDGIHLKRIER 362


>gi|302383278|ref|YP_003819101.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193906|gb|ADL01478.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 521

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 58/184 (31%), Gaps = 15/184 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVY 572
           +  T+  SAT    E+ +     ++   R            +    V I S+  + +   
Sbjct: 178 KRQTLFFSAT-MPPEITRLTQAFLKDPTRIEASRPAMTAETITQYLVRIPSSDPKAKRAA 236

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               +A       ++    K   + + + L +       +H ++    R + + D R G 
Sbjct: 237 LRELMARADVRNGIVFCNRKSEVDVVAKSLKQHGFDAAPIHGDLDQSLRTKTLADFRSGA 296

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             +LV  ++   GLDIP+   V   D             +  IGR  R           T
Sbjct: 297 LKILVASDVAARGLDIPDVSHVFNYDVS-----HHADDYVHRIGRTGRAGKLGQAFMIVT 351

Query: 693 ITKS 696
               
Sbjct: 352 PADD 355


>gi|260558407|ref|ZP_05830603.1| helicase [Enterococcus faecium C68]
 gi|261207113|ref|ZP_05921802.1| helicase [Enterococcus faecium TC 6]
 gi|289567232|ref|ZP_06447617.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
 gi|293556891|ref|ZP_06675452.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
 gi|293567807|ref|ZP_06679148.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
 gi|294615128|ref|ZP_06695014.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
 gi|294617803|ref|ZP_06697416.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
 gi|260075581|gb|EEW63887.1| helicase [Enterococcus faecium C68]
 gi|260078741|gb|EEW66443.1| helicase [Enterococcus faecium TC 6]
 gi|289160980|gb|EFD08895.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
 gi|291589392|gb|EFF21199.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
 gi|291592070|gb|EFF23693.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
 gi|291595943|gb|EFF27223.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
 gi|291600975|gb|EFF31266.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
          Length = 503

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 13/192 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +          + I+   +    ++   +R+   +  D+   +  
Sbjct: 176 QTLLFSATMPPAIKNIGVKFMKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L   L  R  R   +H ++   +R+ ++R  + G  D+LV
Sbjct: 236 -VQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R       + +       
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMD 349

Query: 697 IQLAIDETTRRR 708
               I+  T++R
Sbjct: 350 YLHVIENLTKKR 361


>gi|261416325|ref|YP_003250008.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372781|gb|ACX75526.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 802

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK+   ++ E L  R   V  ++ ++    R   I  L++GK D++V  ++   
Sbjct: 366 VLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVATDVAAR 425

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           G+D+    LV   D           S +  IGR  R   S   IL+     K +   I++
Sbjct: 426 GIDVDRISLVVNYD-----IPYDTESYVHRIGRTGRAGRSGNAILFITPREKRMLKTIEK 480

Query: 704 TTRR 707
            TR+
Sbjct: 481 ATRQ 484


>gi|212275171|ref|NP_001130422.1| hypothetical protein LOC100191518 [Zea mays]
 gi|194689078|gb|ACF78623.1| unknown [Zea mays]
 gi|224029523|gb|ACN33837.1| unknown [Zea mays]
          Length = 613

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 75/197 (38%), Gaps = 17/197 (8%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDVYDEI 575
            T++V+AT           E E    +      +         +++  A  ++E +   +
Sbjct: 287 QTVLVTATMTKAVQKLIDEEFEGIVHLRTSSFQKRVSTARHDFIKLSGAENKLEALLQVL 346

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             +  +G ++++   T   +  +  +L E +I     H EV   ER+E +   R  + D 
Sbjct: 347 EPSLAKGNKVMVFCNTLNSSRAVDHFLTENHISTVNYHGEVPAEERVENLNKFRNEEGDC 406

Query: 636 --LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADT 692
             LV  +L   GLD+ +   V + D     F  +    +   GR AR     KV      
Sbjct: 407 PTLVCTDLAARGLDL-DVDHVIMFD-----FPSNSIDYLHRTGRTARMGAKGKVTSIVAK 460

Query: 693 ITKSIQLAIDETTRRRE 709
              ++   I+E  ++ E
Sbjct: 461 KDVALATRIEEAMKKNE 477


>gi|182436152|ref|YP_001823871.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178464668|dbj|BAG19188.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 731

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 82/233 (35%), Gaps = 28/233 (12%)

Query: 492 HRKATLAE-YGFRLPSCMDNRPLRFEEWNCLR-------PTTIVVSAT-PGSWELEQCQG 542
            RK  L+   G  L    +   L F                T++ SAT PG+      + 
Sbjct: 120 QRKLDLSHIRGLVLDEADEMLDLGFLPDVERIITMLPAKRQTMLFSATMPGAVISLARRY 179

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE--------INLAAQQGLRILLTVLTKRM 594
           +     I  T   D    +++    V   ++         I  A  +GL  ++   TKR 
Sbjct: 180 MSQPTHINATSPDDEGTTVKNTVQHVYRAHNMDKPEMLARILQAEGRGL-AMIFCRTKRT 238

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A D+ E L +R      +H ++    R + +R  R GK DVLV  ++   G+D+     V
Sbjct: 239 AADIAEQLEKRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHV 298

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS----IQLAID 702
               +        + + +  IGR  R       I   D         I  A+D
Sbjct: 299 VNYQS-----PEDEKTYLHRIGRTGRAGAKGTAITLVDWDDIPRWQLINKALD 346


>gi|332675736|gb|AEE72552.1| DEAD-box ATP-dependent RNA helicase CshA [Propionibacterium acnes
           266]
          Length = 564

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 57/138 (41%), Gaps = 8/138 (5%)

Query: 570 DVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D  + I    Q     ++++   TKR  + L++ L +R  + R +H ++  + R + ++ 
Sbjct: 289 DKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKK 348

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-V 686
            R G+  +LV  ++   G+D+     V   +         + + +  IGR  R       
Sbjct: 349 FRHGEATILVATDVAARGIDVTGVSHVINHEC-----PEDEKTYVHRIGRTGRAGAKGLA 403

Query: 687 ILYADTITKSIQLAIDET 704
           +   D    +    I++T
Sbjct: 404 VTLVDWADVTRWKLINKT 421


>gi|290508239|ref|ZP_06547610.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. 1_1_55]
 gi|289777633|gb|EFD85630.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. 1_1_55]
          Length = 443

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 72/181 (39%), Gaps = 12/181 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT  G    +  + ++ E + +  T       +I     + +D+  +  L  
Sbjct: 181 RKQTMLFSATLEGDAIKDFAERLLEEPVEVSATPSTRERKKIHQWYYRADDIEHKTALLI 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L   L+E  I   ++  E+  ++R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELAAKLHEAGINTCWLEGEMVQIKRNEAIKRLTDGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VL+  ++   G+DIP+   V   D  +     +    +  IGR  R     + +      
Sbjct: 301 VLIATDVAARGIDIPDVSHVFNFDMPR-----TADIYLHRIGRTGRAGKKGIAISLVEAH 355

Query: 695 K 695
            
Sbjct: 356 D 356


>gi|222151982|ref|YP_002561142.1| hypothetical protein MCCL_1739 [Macrococcus caseolyticus JCSC5402]
 gi|222121111|dbj|BAH18446.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 498

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 94/258 (36%), Gaps = 26/258 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT---GLVDPPVE----IRSARTQVEDVYDEIN 576
            T++ SAT      E  Q  +   +I  T      DP +E    I     + +   + ++
Sbjct: 177 QTMLFSATMPKAIQELVQKFMKNPVIVKTMTNNDSDPSIEEFYTIVKELEKFDTFTNFLD 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               +    ++   TKR  ++LT  L  +  R   +H ++   +R+E+++  +  + D+L
Sbjct: 237 --VHRPELAIVFGRTKRRVDELTSALISKGYRAEGLHGDITQAKRLEVLKKFKNDQIDIL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI     V   D       +   S    IGR  R       I + + +  
Sbjct: 295 VATDVAARGLDISGVTHVYNFD-----IPQDVESYTHRIGRTGRAGKHGMAISFVNPVEM 349

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE------DAATTNISID 749
                I E  + R+ Q          P  V +   + +   +        +A   +I+ +
Sbjct: 350 DYIRQI-EKAKNRQMQALRP----PTPGEVMKAREQDVKSKVKAWVEADTEARIESIAKE 404

Query: 750 AQQLSLSKKKGKAHLKSL 767
             +     K   + L+ L
Sbjct: 405 LIEEYGDVKLVASLLQEL 422


>gi|114564376|ref|YP_751890.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335669|gb|ABI73051.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 477

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 17/202 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +G++   VE  + P       V   +       + +     
Sbjct: 178 KRQNLMFSATFSNEIRELAKGLVNNPVEISVTPRNATANTVTQCVYPVDKTRKSMALIEL 237

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +      ++L+   TK  A  L + L    I+   +H       R + + D + G   V+
Sbjct: 238 IKTNDWKQVLVFSRTKHGANRLAKSLEAAGIKAAAIHGNKSQTARTKALADFKAGAVQVM 297

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA-----D 691
           V  ++   G+DI +   V   D             +  IGR  R  ++   +        
Sbjct: 298 VATDIAARGIDIDQLPFVVNFD-----LPNVPEDYVHRIGRTGRAGSTGQAVSLVGLEEV 352

Query: 692 TITKSIQLAIDETTRRREKQLE 713
            +   I+  I+    R  KQL 
Sbjct: 353 KLLHDIERLINRVIER--KQLA 372


>gi|330007678|ref|ZP_08306017.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. MS 92-3]
 gi|328535359|gb|EGF61841.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. MS 92-3]
          Length = 421

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 76/203 (37%), Gaps = 21/203 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ- 580
           R  T++ SAT     ++     ++E+ +  +   +P    R    Q     D+I    + 
Sbjct: 181 RKQTMLFSATLEGDAIKDFAERLLEEPVEVS--ANPSTRERKKIHQWYYRADDIEHKTKL 238

Query: 581 --------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                   +  R ++ V  +    +L  +L E  I   ++  E+   +R E I+ L  G+
Sbjct: 239 LVNLLQQPEATRAIVFVRKRERVHELANWLREAGINTCWLEGEMVQAKRNEAIKRLTDGR 298

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            +VL+  ++   G+DIP+   V   D  +     +  + +  IGR  R       +    
Sbjct: 299 VNVLIATDVAARGIDIPDVSHVFNFDMPR-----TADTYLHRIGRTGRAGKKGTAISLVE 353

Query: 693 ITK-----SIQLAIDETTRRREK 710
                    I   I+E  + R  
Sbjct: 354 AHDHLLLGKIGRYIEEPLKARVI 376


>gi|322417740|ref|YP_004196963.1| DEAD/DEAH box helicase domain-containing protein [Geobacter sp.
           M18]
 gi|320124127|gb|ADW11687.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
          Length = 442

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TK+ A+ L   LY +      +H ++    R   I ++R GK  +LV  ++  
Sbjct: 246 KAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNRTITNMRRGKVRLLVATDVAA 305

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLD+     V   D  K          +  IGR  R   + + +   ++ +     +D 
Sbjct: 306 RGLDVSGISHVINYDLPKF-----AEDYVHRIGRTGRAGATGIAISFCSMNEVAY--LDR 358

Query: 704 TTR 706
             R
Sbjct: 359 IER 361


>gi|188575689|ref|YP_001912618.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520141|gb|ACD58086.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 614

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L + L  R +    ++ +++   R + I  L+ GK D+LV  ++   
Sbjct: 231 MIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 290

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   +   IL+     K +  +I+ 
Sbjct: 291 GLDVERISHVLNYD-----IPYDTESYVHRIGRTGRAGRTGDAILFVTLREKGMLRSIER 345

Query: 704 TTRR 707
            TR+
Sbjct: 346 ATRQ 349


>gi|194365003|ref|YP_002027613.1| DEAD/DEAH box helicase domain-containing protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194347807|gb|ACF50930.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 646

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK   E+L   L  R +    ++ +++  +R   I  L+ GK D+LV  ++   
Sbjct: 251 MIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+A    K +   I+ 
Sbjct: 311 GLDVERISHVLNYD-----IPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIER 365

Query: 704 TTRR 707
            TR+
Sbjct: 366 ATRQ 369


>gi|78189837|ref|YP_380175.1| transcription-repair coupling factor [Chlorobium chlorochromatii
           CaD3]
 gi|78172036|gb|ABB29132.1| Transcription-repair coupling factor [Chlorobium chlorochromatii
           CaD3]
          Length = 1099

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 103/349 (29%), Gaps = 67/349 (19%)

Query: 153 QPAAIAQLLKGIHSREKVQ------LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206
           Q A   QL   +      Q       L G+ GS  +   A +      P +V+  +    
Sbjct: 28  QSAPYNQLTSLLSKSNAQQKGDILLPLAGLYGSFSSLLAATLFADATAPLMVVCSSN--- 84

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL 266
                                       E Y    +  + K S  N   D + H+     
Sbjct: 85  --------------------------SFERYENDLEVLLPKGSLCNSA-DELSHTIEALA 117

Query: 267 LERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIR 326
            +R   ++         + S       +  + +  ++    L   L    ++++D     
Sbjct: 118 TKRRSLLLSLFDDLDVPLCSPSEVESRMFHVTLDATIGYDALKHFLTANGFEQRDFVEDE 177

Query: 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYV 386
           G F + G  I+++P    +   R+ +FG+ I  +  F   +    +N++   + AN    
Sbjct: 178 GEFSLRGSIIDVYPFGAAE-PLRIELFGDTITSLRLFDSNSQLSGKNLQQATLTANFTTP 236

Query: 387 TPR----------------PTLNTAMKYIKEELKMRLIELEKEG-RLLEAQRL------E 423
                                     +   +EL  RL           E Q L      +
Sbjct: 237 NSPITLLDYLAPETVVLVDDVAELIAQSDGKELLERLCYFRCLSINHAEVQALNFGGEAQ 296

Query: 424 QRITYDLEMLETTGSCQSIENYSRYL---TGRNPGEPPPTLFEYIPEDS 469
           Q++  +   L T       E         + R  GE    L +++ ++S
Sbjct: 297 QKLQGNFRTLATLLHTAHHEARQPLFAMSSKREIGE----LNDFLAQES 341



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 67/192 (34%), Gaps = 12/192 (6%)

Query: 516 EEWNCLRPT-----TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           E    LR       T+ +SATP    L+    G     I+        PVE         
Sbjct: 659 EVKEKLREQFPTIDTLTMSATPIPRTLQFSMLGARDLSIVSTPPKNRQPVETIITDFDAA 718

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRD 627
            +   I    Q+  ++          E + E L E     R  Y H ++ T E  +I+ D
Sbjct: 719 LIQSAIQRELQREGQVFFLHNRIAGLETIAESLRELVPSARIVYAHGQMPTRELEKIMMD 778

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
               + DVL+   ++  GLDI     + I  AD  G     + L Q  GR  R+      
Sbjct: 779 FMQQEVDVLISTTIIGSGLDISNANTIIINRADLFGL----SDLYQLRGRVGRSERKAYC 834

Query: 688 LYADTITKSIQL 699
                  K+++ 
Sbjct: 835 YLITPPMKTLKK 846


>gi|50409637|ref|XP_456892.1| DEHA2A12958p [Debaryomyces hansenii CBS767]
 gi|74659543|sp|Q6BY27|DBP2_DEBHA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49652556|emb|CAG84869.1| DEHA2A12958p [Debaryomyces hansenii]
          Length = 536

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 70/182 (38%), Gaps = 14/182 (7%)

Query: 524 TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT           +  +  Q  +    +  +  +   VE+ +   + + +   +
Sbjct: 285 QTLMWSATWPKEVQALTRDYLNDPIQVTVGSLELAASHTITQLVEVVTEFEKRDRLIKHL 344

Query: 576 NLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             A      + L+   TKR  +++T YL         +H + +  ER  ++++ + GK  
Sbjct: 345 ETATADPEAKCLIFASTKRTCDEITNYLRADGWPALAIHGDKQQGERDWVLKEFKTGKSP 404

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           ++V  ++   G+D+     V  LD        +    +  IGR  R  ++   +   T  
Sbjct: 405 IMVATDVAARGIDVKGISYVINLD-----MPGNIEDYVHRIGRTGRAGSTGTAVSFFTDN 459

Query: 695 KS 696
            S
Sbjct: 460 NS 461


>gi|308159971|gb|EFO62485.1| ATP-dependent RNA helicase-like protein [Giardia lamblia P15]
          Length = 655

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++    K  A+ +  Y  +   RV  +H ++   ER   ++  + G+ ++L+G ++ 
Sbjct: 470 YQTIVFTNFKSEADRIFRYFDDMRYRVAVIHGDMTQKERENNLKYFKAGRTNILIGTDVA 529

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           + GLDIP   LV   D        +       IGR  R     + +      +    A+ 
Sbjct: 530 QRGLDIPNVRLVLNYD-----LPGNVDDYTHRIGRTGRAGRPGLAVTFVCPDRDNVGALK 584

Query: 703 ETTRR 707
           +  R+
Sbjct: 585 DIRRK 589


>gi|227358108|ref|ZP_03842449.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|227161444|gb|EEI46481.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 457

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 91/255 (35%), Gaps = 33/255 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ + ++   D        +  +   +  R     + GF      D+      
Sbjct: 129 TPGRLLDHLNKQTVTLAD--------VKTLVLDEADRM---LDMGF-----FDDISDIIS 172

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           + +  R  T++ SAT      +  + I  + +       D   E+ +   Q  ++     
Sbjct: 173 QMSAQR-QTLLFSATWPDEIAKISRKIQQDPVTIEINSPD---ELPAVEQQFYEISRYGK 228

Query: 577 LAA-------QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           L          Q    ++   TKR  +D+ E L E N  V  +H +++  ER + +    
Sbjct: 229 LGLLQKLLSHHQPNSCVVFCNTKRDCQDVYEALTESNQSVLALHGDMEQKERDQTLIRFA 288

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G   VLV  ++   GLDI    +V   +   +  +      I  IGR AR   S   I 
Sbjct: 289 NGSCRVLVATDVAARGLDIKALEMVINYELSHDPEVH-----IHRIGRTARAGESGLAIS 343

Query: 689 YADTITKSIQLAIDE 703
           +          A++E
Sbjct: 344 FCAPEEIPRANALEE 358


>gi|152996400|ref|YP_001341235.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150837324|gb|ABR71300.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 632

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 6/157 (3%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK    +L E L  R      ++ ++    R   +  ++ G+ D+LV  +++  
Sbjct: 250 MIIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDILVATDVVAR 309

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     + +  AI+ 
Sbjct: 310 GLDVERVSHVVNYD-----IPYDTESYVHRIGRTGRAGRSGTAILFVAHRERRMLQAIER 364

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
            TR+  + +      +IN   V      + D +  ED
Sbjct: 365 ATRQPIESMTLPTASDINAHRVNRFKQSITDAMDNED 401


>gi|225174307|ref|ZP_03728306.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
 gi|225170092|gb|EEG78887.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
          Length = 424

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 96/254 (37%), Gaps = 36/254 (14%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR-TQVEDVYDEINLAA 579
           +  T++ SAT PG          + ++ ++    VD  +E +     ++  +       A
Sbjct: 176 KRQTMLFSATMPG------SIRNLAKRYMKTP--VDIKIESKKVTLDEISQLVVSTTDRA 227

Query: 580 QQG--------LR---ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +Q          R    L+   TKR A  L + L E       +H ++   +R ++++  
Sbjct: 228 KQDTLFKLIDQYRPFLALIFCRTKRRAAKLNQALLEHGYSADELHGDLSQAKREQVMKRF 287

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R     +LV  ++   GLD+     V   D       +   S I  IGR  R     + L
Sbjct: 288 RQAHIQLLVATDVAARGLDVEGITHVFNYD-----IPQDLESYIHRIGRTGRAGEKGLAL 342

Query: 689 YADTITKS-IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
                  S +  AI       EK L ++  +   P++ +++    I P   +  + ++ +
Sbjct: 343 TLVAPKDSPMLQAI-------EKGLGYSIDNLNAPKNSEKQRR--IQPERQDKKSVSSQN 393

Query: 748 IDAQQLSLSKKKGK 761
              Q    SK+ GK
Sbjct: 394 RQHQPSKFSKRTGK 407


>gi|33240544|ref|NP_875486.1| superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238072|gb|AAQ00139.1| Superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 603

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 99/261 (37%), Gaps = 15/261 (5%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             ++ SAT      +  +  +    E  I+        +       Q     + +    +
Sbjct: 227 QMVLFSATMPPEIRKLSKRYLRDPAEITIKAKKKEAQLIRQHYITVQNSYKLEVLRRVLE 286

Query: 581 Q--GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
              G  +++   TK +   L E L   N  V  ++ +V    R   +  LR G  ++LV 
Sbjct: 287 LNYGEGVIIFARTKAITLKLAESLEASNHNVAVLNGDVPQNLRERTVERLRQGGINILVA 346

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLD+   GLV   D   +       + +  IGR  R   S   IL+     +S 
Sbjct: 347 TDVAARGLDVERIGLVINYDMPFD-----SEAYVHRIGRTGRAGRSGEAILFISPRERSY 401

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
              ++    +  +++E     +IN   +++   +++     +       ++  + ++   
Sbjct: 402 LNNLERAVGQSIERMEIPNNESINNHRIQKIKRDLLTTASQKRKDQEETNLIKEVIN--- 458

Query: 758 KKGKAHLKSLRKQMHLAADNL 778
            + ++ L+   K++ LAA NL
Sbjct: 459 -EIESELEITPKEIALAAINL 478


>gi|69248308|ref|ZP_00604710.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257878842|ref|ZP_05658495.1| helicase [Enterococcus faecium 1,230,933]
 gi|257881478|ref|ZP_05661131.1| helicase [Enterococcus faecium 1,231,502]
 gi|257890700|ref|ZP_05670353.1| helicase [Enterococcus faecium 1,231,410]
 gi|258615088|ref|ZP_05712858.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium DO]
 gi|293560261|ref|ZP_06676758.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
 gi|294621795|ref|ZP_06700954.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
 gi|314938932|ref|ZP_07846197.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|314943517|ref|ZP_07850284.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|314948188|ref|ZP_07851582.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
 gi|314951548|ref|ZP_07854594.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|314991589|ref|ZP_07857065.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|314994922|ref|ZP_07860049.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|68194452|gb|EAN08953.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257813070|gb|EEV41828.1| helicase [Enterococcus faecium 1,230,933]
 gi|257817136|gb|EEV44464.1| helicase [Enterococcus faecium 1,231,502]
 gi|257827060|gb|EEV53686.1| helicase [Enterococcus faecium 1,231,410]
 gi|291598627|gb|EFF29685.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
 gi|291605711|gb|EFF35148.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
 gi|313590904|gb|EFR69749.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|313593873|gb|EFR72718.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|313596242|gb|EFR75087.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|313597889|gb|EFR76734.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|313641641|gb|EFS06221.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|313645321|gb|EFS09901.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
          Length = 503

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 13/192 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +          + I+   +    ++   +R+   +  D+   +  
Sbjct: 176 QTLLFSATMPPAIKNIGVKFMKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L   L  R  R   +H ++   +R+ ++R  + G  D+LV
Sbjct: 236 -VQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R       + +       
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMD 349

Query: 697 IQLAIDETTRRR 708
               I+  T++R
Sbjct: 350 YLHVIENLTKKR 361


>gi|317495876|ref|ZP_07954239.1| DEAD/DEAH box helicase [Gemella moribillum M424]
 gi|316914053|gb|EFV35536.1| DEAD/DEAH box helicase [Gemella moribillum M424]
          Length = 485

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 99/269 (36%), Gaps = 15/269 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSART------QVEDVYDE 574
           R  T++ SAT     +E  +  + + ++++     D   +I    T      ++E +   
Sbjct: 174 RHQTLLFSATMPKTIMELSKDFMKDYKLVKTMSDEDLNPDITEFATIARENEKLETLIGF 233

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++   Q     ++   TKR  ++L+  L  +      +H ++   +R+EI+R  +     
Sbjct: 234 LD--VQNPNLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQ 291

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           +LV  ++   G+DI +   V   D       +   S    IGR  R   S V + + + I
Sbjct: 292 ILVATDVAARGIDISDVTHVYNFD-----IPQDTESYTHRIGRTGRAGKSGVAVTFLNPI 346

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
                  I+ +   R K L       +          EV+  +        +++      
Sbjct: 347 EMPYLKDIEASRGERMKMLRPYTSEEVKKARYNRMFEEVVSELDNNHVEFNSLANKLMAE 406

Query: 754 SLSKKKGKAHLKSLRKQMHLAADNLNFEE 782
           + ++K     L  L          L+FE+
Sbjct: 407 ANAEKIITVLLSKLINDKKEVDVELSFEK 435


>gi|239995308|ref|ZP_04715832.1| transcription-repair coupling factor [Alteromonas macleodii ATCC
           27126]
          Length = 183

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 59/165 (35%), Gaps = 10/165 (6%)

Query: 176 VTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235
           + GS     +++ +   + P +++  +   A +L  E   F   N             P 
Sbjct: 28  LQGSSAALCISQALSQYKGPIVLITADTPSAMKLEKEIAFFLSDNTKHT---------PI 78

Query: 236 AYVPRTDTYIEKESSINEQIDRMRHSAT-RSLLERNDCIVVSSVSCIYGIGSVESYSQMI 294
              P  +T      S ++ I   R     R   +     +V   + +  +      ++ +
Sbjct: 79  TLFPDWETLPYDSFSPHQDIVSQRLETLFRFTQQGEGIFIVPVNTLMQRLAPTNYLAKYL 138

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIF 339
           + L  GD++++ +   +L +  Y      +    F V G  I++F
Sbjct: 139 LMLNKGDTLDRDQFRRNLEQAGYLHVSQVMSHSEFSVRGSIIDLF 183


>gi|222424886|dbj|BAH20394.1| AT3G13920 [Arabidopsis thaliana]
          Length = 237

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 17/192 (8%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 28  YDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKE 87

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 88  EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 145

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 146 MREFRSGSSRVLITTDLLARGIDVQQVSLVINFD-----LPTQPENYLHRIGRSGRFGRK 200

Query: 685 KVILYADTITKS 696
            V +   T    
Sbjct: 201 GVAINLVTRDDE 212


>gi|212550405|ref|YP_002308722.1| ATP-dependent RNA helicase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548643|dbj|BAG83311.1| putative ATP-dependent RNA helicase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 548

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 68/188 (36%), Gaps = 21/188 (11%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   TK   +++  +L      V  +H ++   +R  I++  RL    +LV  ++   G
Sbjct: 246 IVFCRTKNETQEIANFLIRDGYNVDALHGDLSQSQRDYIMQKFRLHNIQLLVATDVASRG 305

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDET 704
           LD+     +        G      S I   GR  R   +   I       K    AI+  
Sbjct: 306 LDVDGLSHIINY-----GLPSDIESYIHRSGRTGRAGKTGTSIAIIHLKEKFKIRAIERC 360

Query: 705 TRRREKQLEHNKKHNINP--QSVKEK----IMEVIDPILLEDAATTNI--SIDAQQLSLS 756
                  +    +  I P  + + +K     ++ ++ + + +    +I  SI  +   LS
Sbjct: 361 -------INKTFEKGIIPSGKEICKKRLFHFIDKLEGVEVNEGEIKDIFPSIYYKLDWLS 413

Query: 757 KKKGKAHL 764
           K+     +
Sbjct: 414 KEDIVKRI 421


>gi|193785182|dbj|BAG54335.1| unnamed protein product [Homo sapiens]
          Length = 674

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 169 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 228

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 229 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 287

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 288 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 342

Query: 696 S 696
           S
Sbjct: 343 S 343


>gi|167824801|ref|ZP_02456272.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 9]
          Length = 351

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I + Q I     +   V     R   + + D + 
Sbjct: 126 QTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLL 185

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                    ++   TK  A+ L   L +   +   +H ++    R   IR LR  +  VL
Sbjct: 186 RDVALDQ-AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVL 244

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 245 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 297

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 298 EQGALKRIER 307


>gi|114669836|ref|XP_001147439.1| PREDICTED: DEAD box polypeptide 42 protein isoform 2 [Pan
           troglodytes]
 gi|114669838|ref|XP_001147515.1| PREDICTED: DEAD box polypeptide 42 protein isoform 3 [Pan
           troglodytes]
          Length = 674

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 169 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 228

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 229 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 287

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 288 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 342

Query: 696 S 696
           S
Sbjct: 343 S 343


>gi|94990733|ref|YP_598833.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
 gi|94544241|gb|ABF34289.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
          Length = 539

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P      +         I+   L +  VE    R + ++ +D +     
Sbjct: 176 QTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVEQYYVRVKEQEKFDTMTRLMD 235

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV 
Sbjct: 236 VNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +   
Sbjct: 296 TDVAARGLDISGVTHVYNYDIT-----QDPESYVHRIGRTGRAGKSGESITFVSPNEMGY 350

Query: 699 LAIDETTRRREKQL----------EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           L++ E     +KQ+              K  +  + ++    +       +      + +
Sbjct: 351 LSMIENL--TKKQMKPLRPATAEEAFQAKKKVALKKIERDFADETIRSNFDKFKGDAVQL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            A+    + ++   ++ SL  Q
Sbjct: 409 AAEF---TPEELALYILSLTVQ 427


>gi|89891113|ref|ZP_01202621.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Flavobacteria
           bacterium BBFL7]
 gi|89516757|gb|EAS19416.1| ATP-dependent RNA  helicase, DEAD/DEAH box family [Flavobacteria
           bacterium BBFL7]
          Length = 449

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 107/287 (37%), Gaps = 30/287 (10%)

Query: 497 LAEYGFR--LPSCMDNRPLRFEEWNCLRPTTIVVSATPGS--WELEQCQGIIVEQI---I 549
           + + GFR  L +  D+ P         +   I+ SAT      +  +      E++   +
Sbjct: 157 MLDLGFRFQLTNIFDHLP--------KKRQNIMFSATMTDQIEDFIKSYFFNPEKVSVAV 208

Query: 550 RPTGLVDPPVEIRSART--QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER-N 606
             T L +               ++  ++    ++  ++L+ V  K+ A+ L +Y+ ER  
Sbjct: 209 SGTRLENIEQTCYPVENFYTKANLLMDLLTDVEEFKKVLVFVGNKKSADRLQDYMLERYG 268

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
             +  +HS      R+  I     G+  +L+  +++  GLD+ +   V  +D     F  
Sbjct: 269 DEIAVIHSNKTQNYRLRSIELFDTGERRILIATDVMARGLDLEKISHVINIDVPS--FPE 326

Query: 667 SKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI----N 721
           +    +  IGR+ R     K IL+     K  ++AI+     +  ++   ++  +     
Sbjct: 327 N---YMHRIGRSGRAEEKGKTILFYTEKEKEDKIAIEALMDYKIPEIPFPEEVEVSNQKT 383

Query: 722 P--QSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKS 766
           P  + V  ++      I  E  A+ +   +  +        +  +  
Sbjct: 384 PEEKPVVRELFNPHKVIEEERGASFHEKSEKNKKVNLGGSYRREIAK 430


>gi|73965189|ref|XP_861178.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           isoform 2 [Canis familiaris]
          Length = 432

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 169 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 228

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 229 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 287

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 288 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 342

Query: 696 S 696
           S
Sbjct: 343 S 343


>gi|66819701|ref|XP_643509.1| hypothetical protein DDB_G0275443 [Dictyostelium discoideum AX4]
 gi|74897315|sp|Q553B1|DDX46_DICDI RecName: Full=ATP-dependent RNA helicase ddx46; AltName:
           Full=ATP-dependent RNA helicase helB1; AltName:
           Full=DEAD box protein 46
 gi|60471516|gb|EAL69472.1| hypothetical protein DDB_G0275443 [Dictyostelium discoideum AX4]
          Length = 1151

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 65/180 (36%), Gaps = 13/180 (7%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRP-----TGLVDPPVEIRSARTQVEDVYDEIN 576
            TI+ SAT  P    + +       +II       +  ++  VE+R   T+   + + ++
Sbjct: 692 QTIMFSATFPPKVENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIELLS 751

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +   +G  IL+    +   ++L   L     +   +H      +R E I D +     +L
Sbjct: 752 IWYHKGQ-ILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTIL 810

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +   L   GLDI +  LV   D             +  +GR  R  N        T  + 
Sbjct: 811 IATPLASRGLDIKDLNLVVNFDC-----PDHLEDYVHRVGRTGRAGNRGTAYTFITPDEE 865


>gi|303238769|ref|ZP_07325301.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593648|gb|EFL63364.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 544

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 76/210 (36%), Gaps = 34/210 (16%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+   TKR  ++LT  L  R      +H ++K  +R  ++   R G+ D+L+  ++   G
Sbjct: 247 LVFCNTKRQVDELTSSLQSRGYSTEALHGDMKQDQRNRVMTKFRKGQIDILIATDVAARG 306

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +D+     V   D         +   +  IGR  R   +    +   + + I    D   
Sbjct: 307 IDVDNVEAVFNYD-----LPSDEEYYVHRIGRTGRAGKTG-KSFTFVVGREIHKLKDI-- 358

Query: 706 RRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS--IDAQQLSLSKKKGKAH 763
                            Q   +  + +I P    D     I   ++  + +L++     +
Sbjct: 359 -----------------QRYTKSTIHLIKPPTAMDVEERKIGLILNKVKDTLAEGNFSKY 401

Query: 764 LKSLRKQMHLA-ADNLN------FEEAARI 786
           +  + K +  A + +L+       E AA +
Sbjct: 402 VSYVEKVLDEANSKDLDTNYVTNLEIAAAL 431


>gi|261379789|ref|ZP_05984362.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           subflava NJ9703]
 gi|284797475|gb|EFC52822.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           subflava NJ9703]
          Length = 463

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 74/194 (38%), Gaps = 21/194 (10%)

Query: 521 LRPTTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSA-------RTQVED 570
            +  T++ SAT  P   +L Q      E + +      +  VE           R  +E 
Sbjct: 182 KQRQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRNLLER 241

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++++      ++++   TK+  + +T  L  RNI  + +H +     R+E +   + 
Sbjct: 242 LIVDLHM-----NQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKE 296

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VLV  ++   GLDI E   V   +             +  IGR  R     V I  
Sbjct: 297 GTLRVLVATDVAARGLDIAELPFVINYE-----LPTQPEDYVHRIGRTGRAGADGVAISL 351

Query: 690 ADTITKSIQLAIDE 703
            D   + +  +I E
Sbjct: 352 MDKTEQKMFESIKE 365


>gi|224124506|ref|XP_002330040.1| predicted protein [Populus trichocarpa]
 gi|222871465|gb|EEF08596.1| predicted protein [Populus trichocarpa]
          Length = 735

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++     +G + ++   TKR A++++  L +  I    +H ++   +R   +   R 
Sbjct: 334 ILSDLVTVYAKGEKTIIFTRTKRDADEVSMALTQS-IASEALHGDISQHQRERTLNGFRQ 392

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GKF VLV  ++   GLDIP   L+               + +   GR  R       +
Sbjct: 393 GKFTVLVATDVASRGLDIPNVDLII-----HYELPNDPETFVHRSGRTGRAGKEGTAI 445


>gi|163746995|ref|ZP_02154351.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161379556|gb|EDQ03969.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 529

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 77/252 (30%), Gaps = 34/252 (13%)

Query: 524 TTIVVSATPGSWELEQC---------------QGIIVEQIIRPTGLVDPPVEIRSARTQV 568
            T+  SAT    E+E+                Q    E I +   +     + R A  + 
Sbjct: 180 QTLFFSATMAP-EIERITNTFLSNPERIEVARQATTSENITQGVVMFKASRKDREATEKR 238

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + +   I+   ++    ++    K   + + + L +       +H ++   +R + +   
Sbjct: 239 KLLRMLIDAEGEKCTNAIIFCNRKMDVDTVAKSLKKHGYDAAPIHGDLDQSQRTKTLDGF 298

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G+   L+  ++   GLD+P    V   D             +  IGR  R       +
Sbjct: 299 RNGELRFLIASDVAARGLDVPSVSHVFNFDV-----PSHAEDYVHRIGRTGRAGRDGKAI 353

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                         E    R  Q E        P+   E +++   P   E  A      
Sbjct: 354 MICVPRDEKNFEDVE----RLVQKE-------IPR--LENLLQTDAPAPEEATAEAPAKA 400

Query: 749 DAQQLSLSKKKG 760
           D +     K K 
Sbjct: 401 DDKPKFADKPKR 412


>gi|159036117|ref|YP_001535370.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157914952|gb|ABV96379.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
           CNS-205]
          Length = 548

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 7/136 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   I  A  +GL  ++   TKR A+ +   L  R   V  +H ++    R   +R  R
Sbjct: 258 EIVARILQARGRGL-TMIFTRTKRAADRVAADLDFRGFAVAAVHGDLGQGARERALRAFR 316

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            GK D LV  ++   G+D+     V   D         + +    IGR  R   S V + 
Sbjct: 317 TGKIDTLVATDVAARGIDVSGVTHVLNYDC-----PEDQDTYTHRIGRTGRAGASGVAVT 371

Query: 689 YADTITKSIQLAIDET 704
           + D         ID+T
Sbjct: 372 FVDWDDMPRWRIIDKT 387


>gi|157693948|ref|YP_001488410.1| competence protein FA [Bacillus pumilus SAFR-032]
 gi|157682706|gb|ABV63850.1| competence protein FA [Bacillus pumilus SAFR-032]
          Length = 459

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 91/214 (42%), Gaps = 23/214 (10%)

Query: 504 LPSCMDNRPLRFEEWNCLRPT--TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
            P  MD R L F     +R     + +SATP    +       +E I  P       + +
Sbjct: 234 FPYSMDER-LHFAVLKAMRKKGVRVYLSATPSKKMIRDVSRGQLEAIKIPLRFHQQLLPV 292

Query: 562 RSAR-----------TQVEDV-YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
            S +            Q+  +  + +     +  R+LL V +    + +T+ L + ++ V
Sbjct: 293 PSFQWIGHWKKKLKKNQLPPIVMNWMQNHIAKKRRVLLFVPSISTMKKVTKVLRKHHLNV 352

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             + ++    +R + ++  R  K+DVLV   +L  G+ IP    V +L A+   F  S  
Sbjct: 353 EGVSAD--DPDRKQKVQQFRDDKYDVLVTTTILERGVTIPNVQ-VGVLGAESTIFTES-- 407

Query: 670 SLIQTIGRAARNVNSK---VILYADTITKSIQLA 700
           +L+Q  GRA R+ +     V  +   +T+S++ A
Sbjct: 408 ALVQISGRAGRHPDFFKGDVFFFHFGLTRSMKQA 441


>gi|55507560|gb|AAV52794.1| unknown [Homo sapiens]
          Length = 362

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L ++LY        +H +    +R E +   R GK 
Sbjct: 150 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 209

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 210 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 256


>gi|115459616|ref|NP_001053408.1| Os04g0533000 [Oryza sativa Japonica Group]
 gi|75327302|sp|Q7XMK8|RH6_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 6
 gi|32489827|emb|CAE04571.1| OSJNBb0039L24.10 [Oryza sativa Japonica Group]
 gi|113564979|dbj|BAF15322.1| Os04g0533000 [Oryza sativa Japonica Group]
 gi|125591093|gb|EAZ31443.1| hypothetical protein OsJ_15580 [Oryza sativa Japonica Group]
 gi|215701173|dbj|BAG92597.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 498

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 74/219 (33%), Gaps = 35/219 (15%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT             P  + +     + ++ I +    V+   ++         
Sbjct: 299 QILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKVH-------- 350

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   +    E L + + E      Y+H+++    R  +  D R 
Sbjct: 351 CLNTLFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 409

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F +S  + +  +GR+ R  +  + +  
Sbjct: 410 GACRNLVCTDLFTRGIDIQAVNVVINFD-----FPKSAETYLHRVGRSGRFGHLGLAVNL 464

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
            T      L        R +Q    +   I PQ +   I
Sbjct: 465 ITYEDRFNL-------YRIEQELGTEIKPIPPQ-IDRAI 495


>gi|134292532|ref|YP_001116268.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134135689|gb|ABO56803.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 483

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 88/264 (33%), Gaps = 25/264 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLRFEEWNCLRPTTIVVS 529
            +D +     Q   +          + + GF   L +     P         R  T++ S
Sbjct: 135 LLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALP--------ARRQTLLFS 186

Query: 530 ATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLR 584
           AT           I+   +   + P       ++  +     + +       +A  +   
Sbjct: 187 ATFTDDIRAMAATILRNPVNISVSPPNTTASRIKQWVVPVDKRNKPELFMHLVAENKWEH 246

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V T+   + L   L E    V  +H +     R+  +   +     +LV  ++   
Sbjct: 247 ALVFVKTRAGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKARDVQMLVATDVAAR 306

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE- 703
           GLDI +  +V  +D             +  IGR  R   S V +      ++ QLA  E 
Sbjct: 307 GLDIDDLPMVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEA 361

Query: 704 ---TTRRREKQLEHNKKHNINPQS 724
               T RRE++     +H   P++
Sbjct: 362 LIGKTLRREEEPGFEAEHR-VPET 384


>gi|295104477|emb|CBL02021.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           SL3/3]
          Length = 641

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 69/203 (33%), Gaps = 30/203 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT    E+EQ    I+             V++    + V+ +   +    +   
Sbjct: 180 QNLMFSAT-MPAEIEQLAAGILHDPAF--------VKVDPVSSTVDRIQQSLYYVEKGNK 230

Query: 584 R----------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +                 L+   TK  A+ + + L ++ I    +H       R+  + D
Sbjct: 231 KLLLPWLIKNLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALED 290

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + GK  VLV  ++   G+DI E   V   D           + +  IGR AR       
Sbjct: 291 FKSGKTRVLVATDIAARGIDISELSHVFNYD-----LPEVPETYVHRIGRTARAGADGTA 345

Query: 688 LYADTITKSIQLAIDETTRRREK 710
           +      +   LA  E   RR+ 
Sbjct: 346 VSFCAPEEQEYLAGIEKLNRRKI 368


>gi|281201459|gb|EFA75669.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 751

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 13/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP--VEIRSARTQVED----VYDEINL 577
            T++ SAT            +   I    G++     +  R    Q ++    + D ++ 
Sbjct: 479 QTLMFSATFPKPIQNLASDFLNNYIFLKVGVIGTTQNITQRIEYVQDDEKNSYLLDFLST 538

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
               GL  L+ V TKR+ + LT YL  +      +H ++   ER   +   R  +   LV
Sbjct: 539 LKSDGL-TLIFVETKRLCDSLTHYLNTKGFASTCIHGDLSQYERESALNSFRTNQTPYLV 597

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GL IP    V   D             +  IGR  R       I + +   KS
Sbjct: 598 ATDVASRGLHIPNVLYVINFD-----LPTDIHVYVHRIGRTGRAGKKGFAISFYNERNKS 652

Query: 697 I 697
           +
Sbjct: 653 L 653


>gi|219884305|gb|ACL52527.1| unknown [Zea mays]
          Length = 275

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 73/213 (34%), Gaps = 34/213 (15%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT             P  + +     + ++ I +    V+   ++         
Sbjct: 76  QILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKVH-------- 127

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   +    E L + + E      Y+H+++    R  +  D R 
Sbjct: 128 CLNTLFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 186

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F ++  + +  +GR+ R  +  + +  
Sbjct: 187 GACRNLVCTDLFTRGIDIQAVNVVINFD-----FPKNSETYLHRVGRSGRFGHLGLAVNL 241

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            T      L        R +Q    +  +I PQ
Sbjct: 242 ITYEDRFNL-------YRIEQELGTEIKSIPPQ 267


>gi|219888343|gb|ACL54546.1| unknown [Zea mays]
          Length = 525

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 73/213 (34%), Gaps = 34/213 (15%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT             P  + +     + ++ I +    V+   ++         
Sbjct: 326 QILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKVH-------- 377

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   +    E L + + E      Y+H+++    R  +  D R 
Sbjct: 378 CLNTLFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 436

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F ++  + +  +GR+ R  +  + +  
Sbjct: 437 GACRNLVCTDLFTRGIDIQAVNVVINFD-----FPKNSETYLHRVGRSGRFGHLGLAVNL 491

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            T      L        R +Q    +  +I PQ
Sbjct: 492 ITYEDRFNL-------YRIEQELGTEIKSIPPQ 517


>gi|238591428|ref|XP_002392607.1| hypothetical protein MPER_07789 [Moniliophthora perniciosa FA553]
 gi|215458893|gb|EEB93537.1| hypothetical protein MPER_07789 [Moniliophthora perniciosa FA553]
          Length = 225

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 5/118 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++    K   +D+ EYL  + +    +H      ER   I+  + G  DV+V   +  +
Sbjct: 36  VIIFSENKNEVDDIQEYLLLKGVEAVAIHGSKSQEERQYAIKSFKSGAKDVMVASGVASK 95

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           GLD  +   V I    KE         +  IGR  R+  + +      +    Q  +D
Sbjct: 96  GLDFNDIQHVIIFSMPKE-----IEDYVHQIGRTGRSGKTGIATTFVNMNTPEQTLLD 148


>gi|299890868|ref|NP_001177715.1| ATP-dependent RNA helicase DDX19B isoform 1 [Mus musculus]
 gi|26328931|dbj|BAC28204.1| unnamed protein product [Mus musculus]
          Length = 494

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 284 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNREEKFQ 337

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 338 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 397

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 398 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 456

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 457 MVDSKHSMNIL----NR---IQEHFNKK 477


>gi|127511538|ref|YP_001092735.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126636833|gb|ABO22476.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 491

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 63/185 (34%), Gaps = 21/185 (11%)

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEI-----RSARTQVEDVYD---------EINL 577
           P    L        E      GLV+ PVEI      S    V+ +            +  
Sbjct: 177 PKRQNLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVK 236

Query: 578 AAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             QQG   ++L+   TK  A  L ++L  + I    +H       R + + + + G   V
Sbjct: 237 LIQQGDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRV 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI +   V   D             +  IGR  R       +   +  +
Sbjct: 297 LVATDIAARGLDIDQLPQVVNFD-----LPNVPEDYVHRIGRTGRAGADGKAVSLVSDEE 351

Query: 696 SIQLA 700
           +  LA
Sbjct: 352 AKLLA 356


>gi|328863155|gb|EGG12255.1| hypothetical protein MELLADRAFT_46659 [Melampsora larici-populina
           98AG31]
          Length = 542

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 83/266 (31%), Gaps = 36/266 (13%)

Query: 517 EWNCLRPTTIVVSAT-PG------------SWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            +       ++ SAT P              +E+   + + ++ + +    ++   ++  
Sbjct: 206 SFLHKERQVMLFSATFPMIVKDFKDKHMVKPYEINLMEELTLQGVTQYYAFLEERQKVH- 264

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q     ++   +    E L   + +      Y H+++    R  
Sbjct: 265 -------CLNTLFSKLQINQ-AIIFCNSTNRVELLARKITDIGYSCFYSHAKMLQQHRNR 316

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 317 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 371

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQ-------LEHNKKHNI--NPQSVKEKIMEVID 734
             + +   T      L   E     E Q               I   P    ++  +   
Sbjct: 372 RGIAINLITYENRFDLYRIEQELGTEIQPIPAVIDKALYVAPGIEDTPAPTSKRQQQSAS 431

Query: 735 PILLEDAATTNISIDAQQLSLSKKKG 760
                  A  N +    Q S + ++ 
Sbjct: 432 STNAAQHANANTNNRGPQDSRNNRQA 457


>gi|313123075|ref|YP_004033334.1| dead box ATP-dependent RNA helicase srmb [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312279638|gb|ADQ60357.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 481

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 13/188 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI--IRPTGLVDPPVE---IRSARTQVEDVYDEI 575
           R  T++ SAT P   +    + +   Q+  I+   L    ++   +R    +  D    +
Sbjct: 176 RDQTLLFSATMPKPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRL 235

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L  ++   TKR  ++LT  L  R      +H ++    R+++++  + G+ D+
Sbjct: 236 IDVENPDL-AVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDI 294

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLDI     V   D       +   S +  IGR  R   S   + +     
Sbjct: 295 LVATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNE 349

Query: 695 KSIQLAID 702
                 I+
Sbjct: 350 IGYMRTIE 357


>gi|217970097|ref|YP_002355331.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|217507424|gb|ACK54435.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 677

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 72/200 (36%), Gaps = 30/200 (15%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-------------- 569
            T + SAT            ++ ++ R        ++IR+A + V               
Sbjct: 192 QTALFSAT---------MPNVIREVARRHLRNPQEIKIRAATSTVAKISQRYWLVRGVDK 242

Query: 570 -DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            D    I  A +     L+ V TK   E+L + L  R      ++ ++    R  +I  L
Sbjct: 243 LDALTRILDAEESFDAALVFVRTKIATEELADKLAARGYAAAALNGDMNQGLRERVIEQL 302

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-I 687
           + G  D+++  ++   G+D+P    V   D           + +  IGR  R     V I
Sbjct: 303 KNGALDIVIATDVAARGIDVPRVSHVINYD-----IPYDTEAYVHRIGRTGRAGREGVAI 357

Query: 688 LYADTITKSIQLAIDETTRR 707
           L+       +   I+  TR+
Sbjct: 358 LFVAPRETRMLKMIERATRQ 377


>gi|254509500|ref|ZP_05121567.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221533211|gb|EEE36199.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 419

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 63/176 (35%), Gaps = 7/176 (3%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQI-IRPTGLVDPPVE--IRSARTQVEDVYDEINLA 578
            T++ SAT P    EL +      +++ + P G     +   I       +       L+
Sbjct: 182 QTMLFSATMPKQMEELSRAYLTNPQRVQVSPPGKAADKITQSIHFVEKPAKPAKLREILS 241

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A      L+   TK  AE L + L         +H      +R   I+  R G+ ++LV 
Sbjct: 242 ADMDALTLVFSRTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEINILVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
            ++   G+DIP    V   D  +     +    I    RA R   +     A+ + 
Sbjct: 302 TDVAARGIDIPGVAYVINYDLPEV--PDNYVHRIGRTARAGREGEAIAFCSAEEVD 355


>gi|116051486|ref|YP_789681.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586707|gb|ABJ12722.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 446

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 90/249 (36%), Gaps = 19/249 (7%)

Query: 524 TTIVVSATPGSWELEQ--CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--YDEINLAA 579
            T++ SAT     L +   + +   Q++R   + +    +R      +DV   +++    
Sbjct: 183 QTLLFSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVITADDVAHKEQLLQWL 242

Query: 580 QQGL---RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  + ++   T+  A+ LT  L     +V  +H E    +R   I  L+ G   +L
Sbjct: 243 LSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKIL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYADT 692
           V  ++   GLD+    LV   D  + G        +  IGR  R         +I + D 
Sbjct: 303 VATDVAARGLDVEGLDLVINFDMPRSG-----DEYVHRIGRTGRAGAEGLAISLICHGDW 357

Query: 693 -ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
            +  S++  + +   RR  +          P+ +K            +D   T     A+
Sbjct: 358 NLMSSVERYLKQNFERRNIKELKAAYQG--PKKLKASGKAAGSKKKKQDRKGTAAKPAAK 415

Query: 752 QLSLSKKKG 760
           +   ++ K 
Sbjct: 416 RKPAARPKA 424


>gi|145592945|ref|YP_001157242.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           tropica CNB-440]
 gi|145302282|gb|ABP52864.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
          Length = 621

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 7/136 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   I  A  +GL  ++   TKR A+ +   L  R   V  +H ++    R   +R  R
Sbjct: 330 EIVARILQAKGRGL-TMIFTRTKRAADRVAADLDFRGFAVAAVHGDLGQGARERALRAFR 388

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            GK D LV  ++   G+D+     V   D         + +    IGR  R   S V + 
Sbjct: 389 TGKIDTLVATDVAARGIDVSGVTHVLNYDC-----PEDQDTYTHRIGRTGRAGASGVAVT 443

Query: 689 YADTITKSIQLAIDET 704
           + D         ID+T
Sbjct: 444 FVDWDDMPRWRIIDKT 459


>gi|51245542|ref|YP_065426.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
 gi|50876579|emb|CAG36419.1| probable ATP-dependent RNA helicase [Desulfotalea psychrophila
           LSv54]
          Length = 632

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 63/186 (33%), Gaps = 11/186 (5%)

Query: 524 TTIVVSATPGSWELEQCQGII--VEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT  S  +      +   E I I P  ++   +E R       D    I     
Sbjct: 230 QTMLFSATLSSRVMSIANRYLHSPESISISPKQMIGSSIEQRYYLINNSDKIAAITRVFE 289

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +     L+   T+    +L   L  R      +  ++    R  ++   + G+  VLV 
Sbjct: 290 VETVESALIFARTRATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKKGQIKVLVA 349

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS-I 697
            ++   GLDI +   V   D             +  IGR  R   S   +   T+    +
Sbjct: 350 TDVAARGLDIDDISHVFNYD-----LPEDPEVYVHRIGRTGRAGRSGTAISLVTLRDRWM 404

Query: 698 QLAIDE 703
              I++
Sbjct: 405 HRRIEQ 410


>gi|323305660|gb|EGA59400.1| Dhh1p [Saccharomyces cerevisiae FostersB]
          Length = 506

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 16/182 (8%)

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           LP    ++ L F     L     +V      +E+   + + ++ I +        VE R 
Sbjct: 216 LPP--THQSLLFSATFPLTVKEFMVKHQHKPYEINLMEELTLKGITQ----YYAFVEERQ 269

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
               +  ++ ++ +      + ++   +    E L + + +      Y H+ +K  ER +
Sbjct: 270 KLHCLNTLFSKLQI-----NQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNK 324

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  + R GK   LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 325 VFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD-----FPKTAETYLHRIGRSGRFGH 379

Query: 684 SK 685
             
Sbjct: 380 LG 381


>gi|237752073|ref|ZP_04582553.1| transcription-repair coupling factor [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229376640|gb|EEO26731.1| transcription-repair coupling factor [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 1011

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 80/199 (40%), Gaps = 8/199 (4%)

Query: 209 LYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLE 268
           L  + ++      V  F+ +  +  P+      D     +  ++     +R   T    +
Sbjct: 27  LCEDGRSALSCGDVAKFLGFKTFVFPDFRAAFGDDLRSYQEELSALFWTLREFYT---FK 83

Query: 269 RNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGT 328
               +     + ++ + + ES   M  QLK+GD +  K    +L+   Y+  D+  + G 
Sbjct: 84  GEKILFSPLYTLLHPLPNAESLLTM--QLKVGDVLNLKSFKENLLYFGYEFVDLVELGGE 141

Query: 329 FRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQ-KIRNVETIKIYANSHYVT 387
             + GD I+I   + E   +R+++F ++IE +  F   T      N+++++I   +    
Sbjct: 142 VSMRGDIIDILTPN-EQNPYRITLFDDEIESVRYFDSQTQLCSKENLDSLEI-PPAFLSL 199

Query: 388 PRPTLNTAMKYIKEELKMR 406
              +     + I   L+ +
Sbjct: 200 NAESYENLKEAILAILQKQ 218



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 77/201 (38%), Gaps = 23/201 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIV---EQIIRPTGLVDPPVEIRSARTQVED--VYDEINLA 578
             + +SATP    L      I    E    P+        ++    Q++D  + + I   
Sbjct: 645 HLLSMSATPIPRTLNMALSHIKGLSELKTPPSERQATRTFVK----QLDDTLLKEIIMRE 700

Query: 579 AQQGLRILLTVLT----KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            ++G ++     +    ++  E++   L    I +  +HS++   E  +I+ +   G + 
Sbjct: 701 MRRGGQMFYIHNSIATIRQKKEEILRVLPTLKIAI--LHSQIPAQEAEDIVLEFAKGTYQ 758

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+  +++  G+ +P    + + +A+  G       L Q  GR  R              
Sbjct: 759 ILLCTSIVESGIHLPNANTILVDNANYFGI----ADLHQLRGRVGRGNKEGFCYLLIEDF 814

Query: 695 KSIQLAIDETTRRREKQLEHN 715
           +S    I E  ++R   LE N
Sbjct: 815 ES----ITEDAKKRLLALEKN 831


>gi|222153378|ref|YP_002562555.1| DEAD box helicase family protein [Streptococcus uberis 0140J]
 gi|222114191|emb|CAR42728.1| DEAD box helicase family protein [Streptococcus uberis 0140J]
          Length = 561

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 100/262 (38%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT P    E+        E + I+   L +  VE    R + ++ +D +     
Sbjct: 198 QTLLFSATMPAPIKEIGVKFMKNPEHVQIKNKELTNVNVEQFYVRVKEQEKFDTMTRLMD 257

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV 
Sbjct: 258 VDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQIDILVA 317

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI     V   D       +   S +  IGR  R   +   +   +  +   
Sbjct: 318 TDVAARGLDISGVTHVYNYDIT-----QDPESYVHRIGRTGRAGKTGESITFVSPNEMGY 372

Query: 699 LAIDETTRRREKQL----------EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           L++ E     +KQ+              K  +  + ++    +       +      + +
Sbjct: 373 LSMIENL--TKKQMKPLKPATAEEAFQAKKKVALKKIERDFADEAIRSNFDKFKADALKL 430

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            ++    + ++   ++ SL  Q
Sbjct: 431 ASEF---TPEELALYILSLTVQ 449


>gi|119469744|ref|ZP_01612613.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Alteromonadales bacterium TW-7]
 gi|119446991|gb|EAW28262.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Alteromonadales bacterium TW-7]
          Length = 435

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 74/198 (37%), Gaps = 34/198 (17%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPT-GLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           +  T++ SAT              EQ+ + T  L+  PVEI+  +++ E    +      
Sbjct: 192 KKQTMLFSAT------------FPEQVTQLTQKLLTNPVEIQ-VQSKDESTLVQRVFTVN 238

Query: 581 QGLRI---------------LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +G +                L+ V  K+  E L   L +R I  +  H +    ER  +I
Sbjct: 239 KGEKTTVLAHLIKEHKWRQALIFVNAKKDCEHLAGKLEKRGINAQVFHGDKGQSERTRVI 298

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              + G+ +VL+  ++   GLDI +  +V   +       RS    +  IGR+ R     
Sbjct: 299 EKFKAGEIEVLIATDIAARGLDIAKLPVVINFN-----LPRSPADYMHRIGRSGRAGEVG 353

Query: 686 VILYADTITKSIQLAIDE 703
           + L            I E
Sbjct: 354 LALSLIDYEDFHHFKIIE 371


>gi|15618800|ref|NP_225086.1| transcription-repair coupling [Chlamydophila pneumoniae CWL029]
 gi|15836424|ref|NP_300948.1| transcription-repair coupling [Chlamydophila pneumoniae J138]
 gi|16752145|ref|NP_445512.1| transcription-repair coupling factor [Chlamydophila pneumoniae
           AR39]
 gi|33242253|ref|NP_877194.1| transcription-repair coupling factor [Chlamydophila pneumoniae
           TW-183]
 gi|4377210|gb|AAD19029.1| Transcription-Repair Coupling [Chlamydophila pneumoniae CWL029]
 gi|7189888|gb|AAF38755.1| transcription-repair coupling factor [Chlamydophila pneumoniae
           AR39]
 gi|8979265|dbj|BAA99099.1| transcription-repair coupling [Chlamydophila pneumoniae J138]
 gi|33236764|gb|AAP98851.1| transcription-repair coupling factor [Chlamydophila pneumoniae
           TW-183]
          Length = 1085

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 73/237 (30%), Gaps = 17/237 (7%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            + K         LL  +      F  AK+    +   I++         L+   + F  
Sbjct: 13  SISKEFKEETLPLLLENIHPGATAFLAAKMFHDCRASVIMIT-TPARLDDLFENLRTFLD 71

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
              VE+  S  D       +   D   +++           H        R     V+++
Sbjct: 72  QAPVEFPSSEIDLSPKLVNI---DAVGKRD-----------HLLYSLNQHRAPIFCVTTL 117

Query: 279 SCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             +     S ++ SQ  + L +GD ++ +          Y +  +   +G F   G  ++
Sbjct: 118 KALLEKTRSPQATSQQHLDLAVGDVLDPEATTELCKSLGYSQVMLTSEKGEFSCRGGIVD 177

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
           IFP    +  +R+  +G  I  I  + P        V  I I             + 
Sbjct: 178 IFPLSSPE-PFRIEFWGEKIISIRSYNPSDQLSTGKVSKISISPAYTEEASGGNYSH 233



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 55/176 (31%), Gaps = 7/176 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + VSATP    L     G     +I    L   PV         E +   +     +G 
Sbjct: 711 CLTVSATPIPRTLHMSLSGARDLSVIAMPPLDRLPVSTFVMEHNTETLTAALRHELLRGG 770

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +  +          L E +       R    H ++   +   I    +  K D+LV   L
Sbjct: 771 QAYVIHNRIESIYTLAETIRNLIPEARIGVAHGQMGAEDLSNIFTKFKNQKTDILVATAL 830

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  G+DIP    + I  ADK G       L Q  GR  R        +       +
Sbjct: 831 IENGIDIPNANTILIDHADKFG----MADLYQMKGRVGRWNKKAYCYFLVPHLDRL 882



 Score = 44.7 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 15/140 (10%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K++R+++E+++    + L +L    +         TP   +    H + +  F     Y 
Sbjct: 510 KRSRDLTEKSLIVYAEKLLQLEAQRST--------TPAFVYPP--HGESVIKFAETFPYE 559

Query: 149 PSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ   I Q+   + S +   +L+ G  G GKT   M   ++A+    R  IVM P  
Sbjct: 560 ETPDQLKTIDQIYNDMMSPKLMDRLICGDAGFGKTEVIMRAAVKAVCDGHRQVIVMVPTT 619

Query: 204 ILAAQLYSEFKNFFPHNAVE 223
           ILA Q Y  FK       +E
Sbjct: 620 ILATQHYETFKERMAGLPIE 639


>gi|332523459|ref|ZP_08399711.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314723|gb|EGJ27708.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 538

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P      +         I+   L +  VE    R + ++ +D +     
Sbjct: 176 QTLLFSATMPAPIKQIGVKFMKNPEHVQIKNKELTNVNVEQYYVRVKEQEKFDTMTRLMD 235

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV 
Sbjct: 236 VDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +   
Sbjct: 296 TDVAARGLDISNVTHVYNYDIT-----QDPESYVHRIGRTGRAGKSGESITFVSPNEMGY 350

Query: 699 LAIDETTRRREKQL----------EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           L++ E     +KQ+              K  +  + ++    +       E      I +
Sbjct: 351 LSMIENL--TKKQMKPLKPATAEEAFQAKKKVALKKIERDFADETIRSNFEKFKGDAIQL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            ++    + ++   ++ SL  Q
Sbjct: 409 ASEF---TPEELALYILSLTVQ 427


>gi|209418026|gb|ACI46551.1| RE58551p [Drosophila melanogaster]
          Length = 609

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           I    +QGL+  +L+ V +K  A+ L E L    I V  +H+E    +R   ++  R G 
Sbjct: 372 IRDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGS 431

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
             VL+   L+  G+D     LV   D     F  +  S I  IGR  R       I +  
Sbjct: 432 IWVLICTELMGRGIDFKGVNLVINYD-----FPPTTISYIHRIGRTGRAGRPGRAITFFT 486

Query: 692 TITKSIQLAI 701
               S    I
Sbjct: 487 QEDTSNLRGI 496


>gi|206579456|ref|YP_002237080.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae 342]
 gi|288934043|ref|YP_003438102.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|206568514|gb|ACI10290.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae 342]
 gi|288888772|gb|ADC57090.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
          Length = 443

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 72/181 (39%), Gaps = 12/181 (6%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           R  T++ SAT  G    +  + ++ E + +  T       +I     + +D+  +  L  
Sbjct: 181 RKQTMLFSATLEGDAIKDFAERLLEEPVEVSATPSTRERKKIHQWYYRADDIEHKTALLI 240

Query: 580 Q-----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 +  R ++ V  +    +L   L+E  I   ++  E+  ++R E I+ L  G+ +
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELAAKLHEAGINTCWLEGEMVQIKRNEAIKRLTDGRVN 300

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VL+  ++   G+DIP+   V   D  +     +    +  IGR  R     + +      
Sbjct: 301 VLIATDVAARGIDIPDVSHVFNFDMPR-----TADIYLHRIGRTGRAGKKGIAISLVEAH 355

Query: 695 K 695
            
Sbjct: 356 D 356


>gi|145294934|ref|YP_001137755.1| hypothetical protein cgR_0880 [Corynebacterium glutamicum R]
 gi|140844854|dbj|BAF53853.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 424

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 71/189 (37%), Gaps = 20/189 (10%)

Query: 521 LRPTTIVVSAT-PGS-WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---------E 569
            +  T++ SAT PG+   L +     + + +                 QV         E
Sbjct: 186 HQHQTMLFSATMPGAILTLARS---FLNKPVHIRAETSDASATHKTTKQVVFQAHKMDKE 242

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +  +I  A  +G + ++   TKR A  + E L  R   V  +H ++    R + +   R
Sbjct: 243 AITAKILQAKDRG-KTIIFARTKRTAAQVAEDLASRGFSVGSVHGDMGQPAREKSLNAFR 301

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GK D+LV  ++   G+D+ +   V               + +  IGR  R  ++   + 
Sbjct: 302 TGKIDILVATDVAARGIDVDDVTHVINYQT-----PDDPMTYVHRIGRTGRAGHNGTAVT 356

Query: 690 ADTITKSIQ 698
                ++++
Sbjct: 357 LVGYDETLK 365


>gi|71650885|ref|XP_814131.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70879078|gb|EAN92280.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 406

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 72/207 (34%), Gaps = 30/207 (14%)

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
             +E+   + + +  + +    V+   +I           + +    Q    I +   + 
Sbjct: 229 NPYEINLMEELTLRGVTQYYVFVEERQKIH--------CLNTLFNRLQINQSI-IFCNSV 279

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
              E L + + +      Y+H+ ++   R  +  D R G    LV  +L+  G+DI    
Sbjct: 280 NRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNLVCSDLITRGIDIQAVN 339

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           +V   D  K        + +  IGR+ R  +  + +   T      +       R EK+L
Sbjct: 340 VVINFDFPKY-----AETYLHRIGRSGRFGHLGLAINFVTYDDRYNV------YRIEKEL 388

Query: 713 EHNKKHNINPQSVKEKIMEVIDPILLE 739
           +          +V   I   IDP L  
Sbjct: 389 D----------TVINAIPGEIDPELYA 405


>gi|321476533|gb|EFX87493.1| hypothetical protein DAPPUDRAFT_306483 [Daphnia pulex]
          Length = 805

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 15/180 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR--------PTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT     +E+    ++   IR            V   +E+ +   +   +   +
Sbjct: 480 QTLLFSATFKKR-IEKLARDVLSDPIRIVQGDVGEANQDVTQVIEVIAPTAKYSWLITRL 538

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +L+ V  K  AE+L+  L  R + V  +H ++  ++R ++I   +  + D+
Sbjct: 539 VEFMASG-SVLIFVTKKANAEELSASLKSRELSVALLHGDMDQVDRNQVISSFKKKEMDI 597

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R           T   
Sbjct: 598 LVATDVAARGLDIPHIRTVVNYDIARDIDTHT-----HRIGRTGRAGEKGTAYTLVTPAD 652


>gi|289614196|emb|CBI58963.1| unnamed protein product [Sordaria macrospora]
          Length = 584

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 68/201 (33%), Gaps = 28/201 (13%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           +++      ++ SAT                +E+     + +  I +    V+   ++  
Sbjct: 213 QFHPKDRQVMLFSATFPLSVKDFSDKNMTSPYEINLMDELTLRGITQYYAFVEEKQKVH- 271

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+++    R  
Sbjct: 272 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNR 323

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 324 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRYGH 378

Query: 684 SK-VILYADTITKSIQLAIDE 703
               I   +   +     I+ 
Sbjct: 379 LGLAINLINWDDRFNLYNIER 399


>gi|322820318|gb|EFZ26975.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 406

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 72/207 (34%), Gaps = 30/207 (14%)

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
             +E+   + + +  + +    V+   +I           + +    Q    I +   + 
Sbjct: 229 NPYEINLMEELTLRGVTQYYVFVEERQKIH--------CLNTLFNRLQINQSI-IFCNSV 279

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
              E L + + +      Y+H+ ++   R  +  D R G    LV  +L+  G+DI    
Sbjct: 280 NRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNLVCSDLITRGIDIQAVN 339

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           +V   D  K        + +  IGR+ R  +  + +   T      +       R EK+L
Sbjct: 340 VVINFDFPKY-----AETYLHRIGRSGRFGHLGLAINFVTYDDRYNV------YRIEKEL 388

Query: 713 EHNKKHNINPQSVKEKIMEVIDPILLE 739
           +          +V   I   IDP L  
Sbjct: 389 D----------TVINAIPGEIDPELYA 405


>gi|302559847|ref|ZP_07312189.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302477465|gb|EFL40558.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 538

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 79/222 (35%), Gaps = 23/222 (10%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +D        A +  R ++ V T+  A+ + E L +   +   +H  +    R   + D 
Sbjct: 325 KDKAPVTAAIASRKGRTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADF 384

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G  +VLV  ++   G+ +    LV  +D             +   GR AR   +  ++
Sbjct: 385 KDGYVNVLVATDVAARGIHVDGIDLVLNVDP-----AGDHKDYLHRAGRTARAGRTGTVV 439

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE-DAATTNIS 747
                 +           RR+      +   ++      +     DP + E   A +   
Sbjct: 440 SLSLPHQ-----------RRQIFRLM-EDAGVDATRHIIQGGAAFDPEVAEITGARSMTE 487

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
           + A+    + ++ +  +  L K++  A        A+ +RDE
Sbjct: 488 VQAESAGNAAQQAEREVAQLAKELERAQR-----RASDLRDE 524


>gi|78776342|ref|YP_392657.1| ATP-dependent RNA helicase DbpA [Sulfurimonas denitrificans DSM
           1251]
 gi|78496882|gb|ABB43422.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 457

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 105/270 (38%), Gaps = 42/270 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  + +++ +D+L        ++  +  +   +  R     + GF   S   N  L F 
Sbjct: 131 TPGRILKHLKKDTL--------SLEDVDTLVLDEADRM---LDMGF---SEEINEVLEFV 176

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQI-IRPTGL-VDPPVEIRSAR----TQVED 570
             N     T++ SAT     L+  + I    I ++ T   +   +E R        +++ 
Sbjct: 177 PKNR---QTLLFSATYTDEILDISKSIQNGAIHVKTTSTEIANKIEERFYEVNNADKIKT 233

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           V D ++    Q   +++   TK   +++ + L E  +    +H +++  +R +++     
Sbjct: 234 VIDILSNFRPQN--VIIFANTKVEVDEIAKRLQESKVDALAIHGDLEQYDRNDVLVQFAN 291

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
               VLV  ++   GLDI E  +V   D        S  +    IGR AR         A
Sbjct: 292 KSCPVLVATDVAARGLDIKELSMVINYD-----LPHSLETYTHRIGRTARAG-------A 339

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNI 720
           + +  ++  A +E     EK  E+   + I
Sbjct: 340 EGLAFTLYSAYEE-----EKVDEYKNDNRI 364


>gi|313890723|ref|ZP_07824348.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120824|gb|EFR43938.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 538

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P      +         I+   L +  VE    R + ++ +D +     
Sbjct: 176 QTLLFSATMPAPIKQIGVKFMKNPEHVQIKNKELTNVNVEQYYVRVKEQEKFDTMTRLMD 235

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV 
Sbjct: 236 VDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +   
Sbjct: 296 TDVAARGLDISNVTHVYNYDIT-----QDPESYVHRIGRTGRAGKSGESITFVSPNEMGY 350

Query: 699 LAIDETTRRREKQL----------EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           L++ E     +KQ+              K  +  + ++    +       E      I +
Sbjct: 351 LSMIENL--TKKQMKPLKPATAEEAFQAKKKVALKKIERDFADETIRSNFEKFKGDAIQL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            ++    + ++   ++ SL  Q
Sbjct: 409 ASEF---TPEELALYILSLTVQ 427


>gi|226228176|ref|YP_002762282.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
 gi|226091367|dbj|BAH39812.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
          Length = 374

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 73/189 (38%), Gaps = 9/189 (4%)

Query: 521 LRPTTIVVSAT--PGSWELEQC--QGIIVEQIIRPTGLVDPPVE-IRSARTQVEDVYDEI 575
               T++ SAT  P    L +   +  +V Q+ R +         +       ++     
Sbjct: 173 RYRQTLLFSATMPPEVEALGRKYLRKPVVVQVGRRSSAATTVTHAVYPVPRHRKNELLVH 232

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            L       +L+   TK  A+ +   L +  I    MH++    ERI+ + D + GK  V
Sbjct: 233 LLTNSDHESVLVFTRTKSGADRVVSDLAQAKIHAGAMHADKSQRERIQALEDFKSGKLRV 292

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++ + GLDI     V   D  ++         I   GRAA   ++   + A+ I  
Sbjct: 293 LVATDIAQRGLDISGITHVINFDVPQQ--PEDYVHRIGRTGRAASTGDAYTFMSAEEIG- 349

Query: 696 SIQLAIDET 704
            +   I+ T
Sbjct: 350 -MVRTIERT 357


>gi|159110489|ref|XP_001705502.1| ATP-dependent RNA helicase-like protein [Giardia lamblia ATCC
           50803]
 gi|157433587|gb|EDO77828.1| ATP-dependent RNA helicase-like protein [Giardia lamblia ATCC
           50803]
          Length = 656

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++    K  A+ +  Y  +   RV  +H ++   ER   ++  + G+ ++L+G ++ 
Sbjct: 470 YQTIVFTNFKSEADRIFRYFDDMRYRVAVIHGDMTQKERENNLKYFKAGRTNILIGTDVA 529

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
           + GLDIP   LV   D        +       IGR  R     + +      +    A+ 
Sbjct: 530 QRGLDIPNVRLVLNYD-----LPGNVDDYTHRIGRTGRAGRPGLAVTFVCPDRDNVGALK 584

Query: 703 ETTRR 707
           +  R+
Sbjct: 585 DIRRK 589


>gi|281346962|gb|EFB22546.1| hypothetical protein PANDA_001615 [Ailuropoda melanoleuca]
          Length = 710

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 87/257 (33%), Gaps = 34/257 (13%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 293 PQTLLFSATCPPWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 352

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 353 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 411

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 412 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 466

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                         R   QL +  +K  I  + V   +   +D +  +            
Sbjct: 467 P-------------RERGQLRYVEQKAGITFKRVG--VPSTMDLVKSKSMDAIRSLASVS 511

Query: 752 QLSLS--KKKGKAHLKS 766
             ++   +   +  ++ 
Sbjct: 512 YAAVDFFRPSAQRLIEE 528


>gi|269302679|gb|ACZ32779.1| transcription-repair coupling factor [Chlamydophila pneumoniae
           LPCoLN]
          Length = 1083

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 73/237 (30%), Gaps = 17/237 (7%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
            + K         LL  +      F  AK+    +   I++         L+   + F  
Sbjct: 11  SISKEFKEETLPLLLENIHPGATAFLAAKMFHDCRASVIMIT-TPARLDDLFENLRTFLD 69

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278
              VE+  S  D       +   D   +++           H        R     V+++
Sbjct: 70  QAPVEFPSSEIDLSPKLVNI---DAVGKRD-----------HLLYSLNQHRAPIFCVTTL 115

Query: 279 SCIY-GIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
             +     S ++ SQ  + L +GD ++ +          Y +  +   +G F   G  ++
Sbjct: 116 KALLEKTRSPQATSQQHLDLAVGDVLDPEATTELCKSLGYSQVMLTSEKGEFSCRGGIVD 175

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNT 394
           IFP    +  +R+  +G  I  I  + P        V  I I             + 
Sbjct: 176 IFPLSSPE-PFRIEFWGEKIISIRSYNPSDQLSTGKVSKISISPAYTEEASGGNYSH 231



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 55/176 (31%), Gaps = 7/176 (3%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + VSATP    L     G     +I    L   PV         E +   +     +G 
Sbjct: 709 CLTVSATPIPRTLHMSLSGARDLSVIAMPPLDRLPVSTFVMEHNTETLTAALRHELLRGG 768

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +  +          L E +       R    H ++   +   I    +  K ++LV   L
Sbjct: 769 QAYVIHNRIESIYTLAETIRNLIPEARIGVAHGQMGAEDLSNIFTKFKNQKTNILVATAL 828

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           +  G+DIP    + I  ADK G       L Q  GR  R        +       +
Sbjct: 829 IENGIDIPNANTILIDHADKFG----MADLYQMKGRVGRWNKKAYCYFLVPHLDRL 880



 Score = 44.7 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 15/140 (10%)

Query: 89  KQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYH 148
           K++R+++E+++    + L +L    +         TP   +    H + +  F     Y 
Sbjct: 508 KRSRDLTEKSLIVYAEKLLQLEAQRST--------TPAFVYPP--HGESVIKFAETFPYE 557

Query: 149 PSGDQPAAIAQLLKGIHS-REKVQLLLGVTGSGKT-FTMAKVIEAM---QRPAIVMAPNK 203
            + DQ   I Q+   + S +   +L+ G  G GKT   M   ++A+    R  IVM P  
Sbjct: 558 ETPDQLKTIDQIYNDMMSPKLMDRLICGDAGFGKTEVIMRAAVKAVCDGHRQVIVMVPTT 617

Query: 204 ILAAQLYSEFKNFFPHNAVE 223
           ILA Q Y  FK       +E
Sbjct: 618 ILATQHYETFKERMAGLPIE 637


>gi|254293945|ref|YP_003059968.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
 gi|254042476|gb|ACT59271.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
          Length = 478

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 83/245 (33%), Gaps = 20/245 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPP---VEIRSAR-TQVEDVYD 573
           R  T++ SAT      +  +    +    ++ RP    +     V    +   +++    
Sbjct: 177 RRQTLLFSATMPPEIAKLTKQFQNDPKQIEVARPAQTAELITQHVTKSPSDKDEIKRGIL 236

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
              +A+ +    ++    KR  + + + L         +H ++    R+E +   + G  
Sbjct: 237 RAIIASCEVKNGIVFCNRKREVDIVAKSLNAHGFDAAPIHGDLSQSYRMETLEKFKNGDL 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIP+ G V            +    +  IGR  R   +       + 
Sbjct: 297 TLLVASDVAARGLDIPDVGHVFNYAP-----PPNSDDYVHRIGRTGRAGRTGESYTIVSP 351

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
               Q   D   +R  K +E          ++K+ I EV      +           ++ 
Sbjct: 352 RD--QKLWDAVVKRISKDVE-----EFTNDAIKKSIEEVSSRPERKQNNKNENKNSKRRN 404

Query: 754 SLSKK 758
             +KK
Sbjct: 405 RHTKK 409


>gi|242051801|ref|XP_002455046.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
 gi|241927021|gb|EES00166.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
          Length = 612

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 83/219 (37%), Gaps = 20/219 (9%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDVYDEI 575
            T++V+AT           E E    +      +         +++  A  ++E +   +
Sbjct: 286 QTVLVTATMTKAVQKLIDEEFEGIVHLRTSSFQKRVSTARHDFIKLSGAENKLEALLQVL 345

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             +  +G ++++   T   +  +  +L E  I     H EV   ER+E +   R  + D 
Sbjct: 346 EPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVENLNKFRNEEGDC 405

Query: 636 --LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADT 692
             LV  +L   GLD+ +   V + D     F  +    +   GR AR     KV      
Sbjct: 406 PTLVCTDLAARGLDL-DVDHVIMFD-----FPSNSIDYLHRTGRTARMGAKGKVTSIVAK 459

Query: 693 ITKSIQLAIDETTRRREKQLE---HNKKHNINPQSVKEK 728
              ++   I+E  ++ E       +N +   +PQSV  K
Sbjct: 460 KDVALATRIEEAMKKNESLEALTTNNVRRAASPQSVSTK 498


>gi|110004511|emb|CAK98848.1| putative atp-dependent rna helicase protein [Spiroplasma citri]
          Length = 443

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 82/232 (35%), Gaps = 34/232 (14%)

Query: 496 TLAEYGFR--LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIR 550
            + + GF+  L     N P ++         T++ SAT     LE         VE ++ 
Sbjct: 154 EMLKMGFKTDLDKVFQNAPNKY--------QTLLFSATMPKQVLEIANNYQTNPVEIVVT 205

Query: 551 PTGLVDPPVE---IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
              +    +    + +     EDV   +    Q   R ++   TK     + E L    I
Sbjct: 206 KNVIEQNNISQHYVNAISYHKEDVLIALYKHLQPK-RSIIFSNTKVFTNKIAEMLTNNGI 264

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
               ++ +    ER + +R  R GK  V+V  ++   G+DI     V   D   E     
Sbjct: 265 PCCIINGDKSRYERGQAMRLFRDGKVRVMVATDVAARGIDIDNIDYVINYDIPTE----- 319

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL--EHNKK 717
           + S I  IGR AR   + V +   +    +          RE Q    + KK
Sbjct: 320 RESYIHRIGRTARAGATGVAISIVSNRNDL----------REIQHLGAYQKK 361


>gi|262275389|ref|ZP_06053199.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
 gi|262220634|gb|EEY71949.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
          Length = 436

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 65/195 (33%), Gaps = 16/195 (8%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLA 578
            +++ SAT         +G++   VE  + P       VE  I  A  + +       + 
Sbjct: 180 QSLLFSATFSDEIRNLAKGLVNNPVEISVTPANSTARTVEQCIYPADKKKKPAMLSKLIK 239

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                ++L+   TK  A  L  +L E  I    +H       R + + D + G   VLV 
Sbjct: 240 DGDWKQVLVFTRTKHGANKLARFLNEEGITAAPIHGNKSQSARTKALADFKTGDVRVLVA 299

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            ++   G+DIP+   V   +             +  IGR  R     K I          
Sbjct: 300 TDIAARGIDIPQLPQVVNFEIPHV-----AEDYVHRIGRTGRAGEPGKAISLVCADEADD 354

Query: 698 QLAIDETTRRREKQL 712
              I+     R  Q 
Sbjct: 355 LFGIE-----RLIQQ 364


>gi|241205862|ref|YP_002976958.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859752|gb|ACS57419.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 580

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 66/190 (34%), Gaps = 12/190 (6%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVEDVYDEI 575
            +  T++ SAT      +     +V+ +   + P G     VE  +     + +      
Sbjct: 200 KKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLR 259

Query: 576 NLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               +    R ++ + TK  AE L ++L      V  +H      +R   ++  R G   
Sbjct: 260 KSLTENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 319

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
            L+  ++   G+DIP    V   D           + +  IGR AR     + I +    
Sbjct: 320 TLIATDVAARGIDIPAVSHVYNYD-----LPEVPDAYVHRIGRTARAGRDGIAIAFCAPD 374

Query: 694 TKSIQLAIDE 703
              +   I+ 
Sbjct: 375 EAKLLRDIER 384


>gi|229136279|ref|ZP_04265026.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST196]
 gi|228647151|gb|EEL03239.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST196]
          Length = 481

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 70/185 (37%), Gaps = 11/185 (5%)

Query: 525 TIVVSAT-PGSWE-LEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINL--AA 579
           T++ SAT P   E L +        I I+ TG+    +E      + E+    +      
Sbjct: 180 TMLFSATLPKDVEKLSRTYMDSPTHIEIKATGITTDKIEHTLFEMREEEKLSLLKDVTTI 239

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +     ++   T+   + + + L   N     +H  +   +R E++ D R GKF  LV  
Sbjct: 240 ENPDSCIIFCRTQENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQ 698
           ++   G+DI     V   D   E     K S +   GR  R  N+ K I +         
Sbjct: 300 DVAARGIDIDNITHVINYDIPLE-----KESYVHRTGRTGRAGNNGKAITFMTPYENRFL 354

Query: 699 LAIDE 703
             I+E
Sbjct: 355 EEIEE 359


>gi|86137575|ref|ZP_01056152.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
 gi|85825910|gb|EAQ46108.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
          Length = 527

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 93/322 (28%), Gaps = 38/322 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++     LL       T  QI  +   D      + + GF  P       L   
Sbjct: 130 TPGRLLDHFERGKLLL------TGVQIMVVDEADR-----MLDMGFI-PDIERIFSLTP- 176

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP----TGLVDPPVEI----------- 561
                   T+  SAT    E+E+     +    R            +E            
Sbjct: 177 ----FTRQTLFFSATMAP-EIERITNTFLSAPERIEVARQASASETIEQHVVLFKASRKD 231

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R A  +   +   IN   ++    ++    K   + + + L +       +H ++   +R
Sbjct: 232 REASEKRTALRALINAEGEKLTNGIIFCNRKSDVDIVAKSLKKYGFDAAPIHGDLDQSQR 291

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
            + +   R GK  +LV  ++   GLD+P    V   D             +  IGR  R 
Sbjct: 292 TKTLDGFREGKLRILVASDVAARGLDVPSVSHVFNFDVPG-----HPEDYVHRIGRTGRA 346

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
                 +   +      LA  E+  ++E     N      P                   
Sbjct: 347 GREGKAITICSGRDEKALAAVESLLQKEINRLENPVKKAEPAKRSSAKKPSDQDAKPTTG 406

Query: 742 ATTNISIDAQQLSLSKKKGKAH 763
           + T     + +   S K  +A 
Sbjct: 407 SETGSGRKSTRSKTSTKAVEAE 428


>gi|323338408|gb|EGA79633.1| Dhh1p [Saccharomyces cerevisiae Vin13]
          Length = 448

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 16/182 (8%)

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           LP    ++ L F     L     +V      +E+   + + ++ I +        VE R 
Sbjct: 158 LP--XTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQ----YYAFVEERQ 211

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
               +  ++ ++ +      + ++   +    E L + + +      Y H+ +K  ER +
Sbjct: 212 KLHCLNTLFSKLQI-----NQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNK 266

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  + R GK   LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 267 VFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD-----FPKTAETYLHRIGRSGRFGH 321

Query: 684 SK 685
             
Sbjct: 322 LG 323


>gi|323137351|ref|ZP_08072429.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
 gi|322397338|gb|EFX99861.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
          Length = 450

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 84/231 (36%), Gaps = 21/231 (9%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-------PGSWELEQCQGIIVEQI 548
            + + GF +P       L        +  T++ SAT            L+    + V  +
Sbjct: 160 HMLDLGFIVPIRQIVAKLP------KKRQTLLFSATMPKEIAGLAEDMLQNPAQVSVTPV 213

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
                 V   V +     + + + + +N A     R ++   TKR A+ + E+L    + 
Sbjct: 214 ATTAERVAQHVFLVDGGAKRDMLIELMNDADVS--RAIVFTRTKRGADRVAEHLDAAGVG 271

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H      +RI  +   R G+  VLV  ++   G+D+     V   +        + 
Sbjct: 272 AEAIHGNKSQSQRIRALDAFRKGRTRVLVATDIAARGIDVDGVTHVVNYE-----LPETP 326

Query: 669 TSLIQTIGRAARNV-NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH 718
            + +  IGR AR   + + I   D   + +   I++ TR+     +    H
Sbjct: 327 EAYVHRIGRTARAGASGRAISLCDNGERQLLRQIEKLTRQTLAFTDRRSAH 377


>gi|255559765|ref|XP_002520902.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223540033|gb|EEF41611.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 535

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V  K  A +L E L   +IRV  +HS++   +R   + D R G   VL+  +++  
Sbjct: 381 VLIFVQNKERANELYEELKFDSIRVGVIHSDLLQTQREIAVDDFRAGNSWVLIATDVVAR 440

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
           G+D      V   D     F  S  + I  IGR+ R   +   I +       +   I
Sbjct: 441 GMDFKGVNCVINYD-----FPNSAAAYIHRIGRSGRAGRTGEAITFYTENDVPVLRNI 493


>gi|189201972|ref|XP_001937322.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187984421|gb|EDU49909.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 611

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 1/103 (0%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R L+   +K   + + ++LY + + V  +HS+    ER + +R  R  +  +LV   + 
Sbjct: 385 QRTLVFTNSKAKCDMVDDFLYNKGLPVTSIHSDRTQREREDALRSFRTARCPILVATGVT 444

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             GLD+     V   D          T  I  IGR AR  N  
Sbjct: 445 ARGLDVANIKHVINYDLPST-MHEGITEYIHRIGRTARIGNEG 486


>gi|171463843|ref|YP_001797956.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193381|gb|ACB44342.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 482

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 69/210 (32%), Gaps = 15/210 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIR----SARTQVEDVYDE 574
           R  T++ SAT     +     +        +   G     +E +     + +    + + 
Sbjct: 201 RNQTLMFSATFAPKIMSLANELTTNAKRIELAHAGEKHANIEQKLHWADSMSHKHKLLEH 260

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I   A      ++   T+  +E + + L         +H  +    R+  +  LR G+  
Sbjct: 261 ILADADLDQ-AVVFASTQVESEKIADTLRANGYEATALHGAMPQAVRMRRLESLRKGRTK 319

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   G+D+P    V        G           IGR  R   + V +      
Sbjct: 320 ILVATDVAARGIDVPRISHVINF-----GLPMKPEDYTHRIGRTGRAGRNGVAITLVEHR 374

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQS 724
              +  I    R  ++ +  +    + PQ+
Sbjct: 375 DRAK--IRNIERFTQQDIVASVIAGLEPQA 402


>gi|145638668|ref|ZP_01794277.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
 gi|145272263|gb|EDK12171.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
          Length = 439

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 88/260 (33%), Gaps = 34/260 (13%)

Query: 470 LLFVDESHVTIPQISGMYRG-----DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +L  DE+   +    G            RK TL      L S      L  +    L   
Sbjct: 153 MLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL------LFSATLEGELLVDFAERLLND 206

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + V A P   E ++                       S   +++ +   I    ++  R
Sbjct: 207 PVKVDAEPSRRERKKINQWYYHAD--------------SNEHKIKLLARFIE--TEEVTR 250

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++   
Sbjct: 251 GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+DI +   V   D        S  + +  IGR AR       +            + + 
Sbjct: 311 GIDIDDVSHVMNFD-----LPYSADTYLHRIGRTARAGKKGTAVSFVEAHD--YKLLGKI 363

Query: 705 TRRREKQLEHNKKHNINPQS 724
            R  E+ L+      + P++
Sbjct: 364 KRYTEEILKARILAGLEPRT 383


>gi|328949667|ref|YP_004367002.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
           DSM 14884]
 gi|328449991|gb|AEB10892.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
           DSM 14884]
          Length = 517

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 68/194 (35%), Gaps = 15/194 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR------SARTQVEDVYDEI 575
              T+V SAT  SW     +  + +  +    + D  V  R         T++  + D +
Sbjct: 175 ARQTLVFSATMPSWARRLAERHLKDPFVANL-VKDEAVTYRELAIEAPTATRIAVLSDVL 233

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +       R ++   TK   + L   L  R      +H ++    R  ++   R G   V
Sbjct: 234 HAYGAG--RAIVFTRTKAETDALATALAGRRHAAEAVHGDLSQAARERVVARFRKGLVRV 291

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLD+PE  LV                     GR  R   +  ++      +
Sbjct: 292 LVATDVAARGLDVPEVELVV-----HYRLPERVEVYQHRSGRTGRAGRTGTVVLLYGPRE 346

Query: 696 SIQLA-IDETTRRR 708
              +A ++   RRR
Sbjct: 347 RRTVADLERALRRR 360


>gi|256374971|ref|YP_003098631.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
 gi|255919274|gb|ACU34785.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
          Length = 609

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 85/239 (35%), Gaps = 29/239 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +          ++ H+ + ++  +   +        + GF LP     R LR  
Sbjct: 178 TPGRLLD--------LAEQRHLVLGKVRSLVLDEADEM---LDLGF-LPDI--ERVLRMV 223

Query: 517 EWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQIIRP----TGLVDPPVEIRSARTQVEDV 571
                   T++ SAT PG         +     +R      G V    E    R    D 
Sbjct: 224 PDER---QTMLFSATMPGPIITLARTFLNQPTHVRAEENDAGAVHERTEQFIYRAHALDK 280

Query: 572 YDEINLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + +    Q   R   ++   TKR A+ + + + ER   V  +H ++    R + +R  R
Sbjct: 281 VELLARVLQARDRGLSMIFTRTKRTAQKVADDMAERGFAVAAVHGDLGQGAREQALRAFR 340

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            GK DVLV  ++   G+D+     V             + + +  IGR  R   + V +
Sbjct: 341 SGKIDVLVATDVAARGIDVEGVTHVVNY-----QCPEDEKTYVHRIGRTGRAGRTGVAV 394


>gi|153009579|ref|YP_001370794.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561467|gb|ABS14965.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 498

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 16/191 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVED------VYD 573
            T+  SAT    E+ +     +    R            V  R  ++  +D      + D
Sbjct: 194 QTLFFSAT-MPPEITKLTEQFLHSPTRVEVAKASSTAKTVTQRLVKSSKKDWDKRAVLRD 252

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +          ++    K+   +L   L         +H ++    R+ ++ + + GK 
Sbjct: 253 LVRAEGDTLKNAIIFCNRKKDVSELFRSLTRHEFNAGALHGDMDQRARMTMLANFKEGKL 312

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIP+   V   D             +  IGR  R   S       T 
Sbjct: 313 QLLVASDVAARGLDIPDVSHVFNFDVPI-----HSEDYVHRIGRTGRAGRSGKAFTIVTP 367

Query: 694 TKSIQLAIDET 704
           + +  LA  E 
Sbjct: 368 SDTKYLAAIEN 378


>gi|160880140|ref|YP_001559108.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160428806|gb|ABX42369.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 514

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 32/192 (16%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP--VEIRSARTQVEDVYDEINL- 577
               T++ SAT    E+E             T L++ P  ++I    + V+ +   +   
Sbjct: 174 KTRQTLLFSAT-MPKEIES----------LATNLLNNPEIIKISPVTSTVDSIEQSVYFV 222

Query: 578 -------------AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
                           +  R+L+   TK  A+ + + L +  ++ + +H       R   
Sbjct: 223 DRLNKISLLTSLIKEHKMSRVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTA 282

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + D + GK  VLV  ++   G+DI E   V   D             I  IGR  R    
Sbjct: 283 LSDFKEGKIKVLVATDIAARGIDISELSYVVNYD-----IPNQAEIYIHRIGRTGRAGLG 337

Query: 685 KVILYADTITKS 696
              +    I   
Sbjct: 338 GNAINLCNIDDM 349


>gi|145628788|ref|ZP_01784588.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|144979258|gb|EDJ88944.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|309750162|gb|ADO80146.1| ATP-dependent RNA helicase [Haemophilus influenzae R2866]
          Length = 439

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 88/260 (33%), Gaps = 34/260 (13%)

Query: 470 LLFVDESHVTIPQISGMYRG-----DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +L  DE+   +    G            RK TL      L S      L  +    L   
Sbjct: 153 MLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL------LFSATLEGELLVDFAERLLND 206

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + V A P   E ++                       S   +++ +   I    ++  R
Sbjct: 207 PVKVDAEPSRRERKKINQWYYHAD--------------SNEHKIKLLARFIE--TEEVTR 250

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++   
Sbjct: 251 GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+DI +   V   D        S  + +  IGR AR       +            + + 
Sbjct: 311 GIDIDDVSHVMNFD-----LPYSADTYLHRIGRTARAGKKGTAVSFVEAHD--YKLLGKI 363

Query: 705 TRRREKQLEHNKKHNINPQS 724
            R  E+ L+      + P++
Sbjct: 364 KRYTEEILKARILAGLEPRT 383


>gi|330939886|ref|XP_003305904.1| hypothetical protein PTT_18863 [Pyrenophora teres f. teres 0-1]
 gi|311316892|gb|EFQ86001.1| hypothetical protein PTT_18863 [Pyrenophora teres f. teres 0-1]
          Length = 722

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 5/127 (3%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            A+     L+  +      +LT    +     +Y+  +     R   I   R G+F +L+
Sbjct: 316 KAKDRHSTLVFCVDLSHVTNLTAKFRKHGFDAQYVTGDTPAKIRSARIDSFRNGEFPILL 375

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              +  EG DIP    V +    K     S+  L+Q IGR  R   +K   +   +  ++
Sbjct: 376 NCGVFTEGTDIPNIDCVLLARPTK-----SRNLLVQMIGRGMRLHETKRDCHVIDMVSTL 430

Query: 698 QLAIDET 704
              +  T
Sbjct: 431 STGVVST 437


>gi|289676388|ref|ZP_06497278.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae FF5]
          Length = 435

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|254498821|ref|ZP_05111531.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
 gi|254351952|gb|EET10777.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
          Length = 418

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 81/229 (35%), Gaps = 14/229 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSARTQVEDVYDEINLA 578
             ++ SAT         +G++ + +      R T  +     +       +       + 
Sbjct: 180 QNLLFSATFSEAIRTLAKGLLNKPVEIDVAPRNTTAIAVKQTVHPVDKNRKHALLSHLIH 239

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             +  + L+   TK  A  L + L E +I    +H      +R +++ D + G+  +LV 
Sbjct: 240 KNKWGQTLVFSKTKHGANKLVQQLAEEHIYAAAIHGNKSQSQRTKVLADFKSGELHILVA 299

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT--KS 696
            ++   G+DI +   V   D  +          I   GRA  + ++  ++ AD +   ++
Sbjct: 300 TDIAARGIDIDQLPCVVNYDLPQV--AEDYVHRIGRTGRAGASGSAISLVCADEVGQLQA 357

Query: 697 IQLAIDETTRRREKQLEHNKKHNIN----PQSVKEKIMEVIDPILLEDA 741
           I+  I     R E   +    H +     P  VK        P +    
Sbjct: 358 IEKLIKRKLERIEI-EDFEPHHRLPSSALPTQVKRSAPRSRKPSVDAKK 405


>gi|261415437|ref|YP_003249120.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371893|gb|ACX74638.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 486

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 92/260 (35%), Gaps = 43/260 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             +  SAT    E+ +    +   I+RP  +    VE+    T +E +  E+    ++  
Sbjct: 181 QNLFFSAT-MPEEISK----LAATILRPNPV---RVEVAPQSTPIERIRQELYRIDKRRK 232

Query: 584 ---------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
                          ++L+   TK  A+ +   L +  I+   +H       R E + + 
Sbjct: 233 GALLKELLAEHPEMKKVLVFCRTKHGADKIVRVLEKAGIKCAAIHGNKSQNRRQEALGNF 292

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +  +  VLV  ++   G+D+ +   V   D   E       + +  IGR AR     V +
Sbjct: 293 KCEQIRVLVATDIAARGIDVDDVSHVFNYDLPNE-----HETFVHRIGRTARAGKEGVAI 347

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +  +   L   E   R +            P+   + I E + P   E   T    +
Sbjct: 348 SFCSPDEESDLRGIEKLTRVKI-----------PEG-DQSIYENLPPPQKE---TAESMM 392

Query: 749 DAQQLSLSKKKGKAHLKSLR 768
              +  +S+++ +A     R
Sbjct: 393 RNSRGRMSREEAQARAAETR 412


>gi|46907469|ref|YP_013858.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093505|ref|ZP_00231267.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 4b
           H7858]
 gi|226223849|ref|YP_002757956.1| ATP-dependent RNA helicase (DEAD motif) [Listeria monocytogenes
           Clip81459]
 gi|254824696|ref|ZP_05229697.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J1-194]
 gi|254852700|ref|ZP_05242048.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL R2-503]
 gi|254932440|ref|ZP_05265799.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HPB2262]
 gi|255522060|ref|ZP_05389297.1| ATP-dependent RNA helicase (DEAD motif) [Listeria monocytogenes FSL
           J1-175]
 gi|300765280|ref|ZP_07075264.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N1-017]
 gi|46880737|gb|AAT04035.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018123|gb|EAL08894.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 4b
           H7858]
 gi|225876311|emb|CAS05020.1| Putative ATP-dependent RNA helicase (DEAD motif) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606021|gb|EEW18629.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL R2-503]
 gi|293583997|gb|EFF96029.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HPB2262]
 gi|293593935|gb|EFG01696.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J1-194]
 gi|300513963|gb|EFK41026.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N1-017]
 gi|332311691|gb|EGJ24786.1| ATP-dependent RNA helicase dbpA [Listeria monocytogenes str. Scott
           A]
          Length = 470

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 85/250 (34%), Gaps = 27/250 (10%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            +   +  SAT    E++       +  +      +    I     Q ++    +     
Sbjct: 171 KQRQNLFFSAT-MPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEMQTDNKEKTLKDVLI 229

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +     ++   TK   ++LT+ L   +++V  +H  ++  +R   + D + GK   L+ 
Sbjct: 230 TENPDSAIIFCNTKNQVDELTDLL---DVKVSKIHGGLRQEDRFRAMDDFKSGKSRFLIA 286

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSI 697
            ++   G+D+    LV   D   E     K + +  IGR  R   S K I +  T    +
Sbjct: 287 TDVAGRGIDVDNVSLVINYDLPIE-----KENYVHRIGRTGRAGKSGKAISFVKTNENPL 341

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
              I+E                I     K++   VI+    E+A                
Sbjct: 342 LRDIEEM-----------LDVTIE----KKRKPTVIEVKANEEAFRKKQQKRPTIKKARG 386

Query: 758 KKGKAHLKSL 767
           +K   ++  L
Sbjct: 387 EKLNKNIMKL 396


>gi|302791241|ref|XP_002977387.1| hypothetical protein SELMODRAFT_232961 [Selaginella moellendorffii]
 gi|300154757|gb|EFJ21391.1| hypothetical protein SELMODRAFT_232961 [Selaginella moellendorffii]
          Length = 413

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/310 (17%), Positives = 98/310 (31%), Gaps = 44/310 (14%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           FVDE    + QI+ +   +  R     + GF  P+         +E       TI+ SAT
Sbjct: 126 FVDEGVCKLDQITYLVLDEADRM---LDLGFE-PAVRAIVSHIPQE-----RQTIMFSAT 176

Query: 532 ------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA------ 579
                   + E  Q     +   ++ T   +           VE + D+           
Sbjct: 177 WPTSVQKLAQEFIQDASPELISFLQITVGSEDLSANHDVTQIVEVLDDKSRDRRLQELLR 236

Query: 580 ----QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                +  R+L+ VL K+ A  +  +L ++   V  +H +     R + +   + G   +
Sbjct: 237 LYHKTKRNRVLVFVLYKKEAVRVENFLQKQGWNVTGIHGDKSQQARNQALSAFKDGSHPL 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   GLDIP+   V         F  +    +  IGR  R           T   
Sbjct: 297 LIATDVAARGLDIPDVEFVINYS-----FPLTTEDYVHRIGRTGRAGKKGTAHTFFTTAD 351

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSV------KEKIMEVIDPILLEDAATTNISID 749
             +        R  +Q        I P+ +       +K    +      + A       
Sbjct: 352 KARAGELVNILREARQ--------IVPEELLKFGAHVKKKESKLYGAHFRELAADAPKAQ 403

Query: 750 AQQLSLSKKK 759
                +S ++
Sbjct: 404 KITFDVSDEE 413


>gi|297833736|ref|XP_002884750.1| hypothetical protein ARALYDRAFT_478294 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330590|gb|EFH61009.1| hypothetical protein ARALYDRAFT_478294 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 539

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 5/101 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L + L   NIR   +HS++   ER   +   R G+  VL+  +++  
Sbjct: 381 VLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIAR 440

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           G+D      V   D     F  S ++ I  IGR+ R   S 
Sbjct: 441 GMDFKGINCVINYD-----FPDSASAYIHRIGRSGRAGRSG 476


>gi|257899462|ref|ZP_05679115.1| helicase [Enterococcus faecium Com15]
 gi|293573030|ref|ZP_06683972.1| cold-shock deAd box protein a [Enterococcus faecium E980]
 gi|257837374|gb|EEV62448.1| helicase [Enterococcus faecium Com15]
 gi|291606932|gb|EFF36312.1| cold-shock deAd box protein a [Enterococcus faecium E980]
          Length = 503

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 13/192 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +          + I+   +    ++   +R+   +  D+   +  
Sbjct: 176 QTLLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLFD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L   L  R  R   +H ++   +R+ ++R  + G  D+LV
Sbjct: 236 -VQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKNGHLDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R       + +       
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMD 349

Query: 697 IQLAIDETTRRR 708
               I+  T++R
Sbjct: 350 YLHVIENLTKKR 361


>gi|255572963|ref|XP_002527412.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223533222|gb|EEF34978.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 505

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 14/181 (7%)

Query: 524 TTIVVSAT-PGSWEL-------EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E           + +I    ++    +   V+I S   Q  +   ++
Sbjct: 279 QTLYWSATWPKEVEQLARQFLYNPYKVVIGSADLKANHAIRQHVDIVS-ENQKYNKLVKL 337

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G RIL+ + TK+  + +T  L         +H +    ER  ++ + + GK  +
Sbjct: 338 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPI 397

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  S    +  IGR  R           T + 
Sbjct: 398 MTATDVAARGLDVKDVKFVINYD-----FPGSLEDYVHRIGRTGRAGAKGTAYTFFTASN 452

Query: 696 S 696
           +
Sbjct: 453 A 453


>gi|198423018|ref|XP_002125988.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
           [Ciona intestinalis]
          Length = 718

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 73/189 (38%), Gaps = 22/189 (11%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
            +L+   TK+ A  +   L    ++   +H  +   +R+E ++  + G  D+LV  +L  
Sbjct: 418 NVLVFTQTKKQAHRMHIVLGLLGLKAGELHGNLSQGQRLESLKRFKNGDIDILVCTDLAA 477

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLDI     V  L         ++   +  +GR AR   S                + E
Sbjct: 478 RGLDIENVKTVINL-----TMPNTQQHYVHRVGRTARAGKSG----------RSVSLVGE 522

Query: 704 TTRRREKQLEHNKKH----NINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK-- 757
           T R+  K++    K+     + P  V  K  + ++ I  E      +    +Q+  S+  
Sbjct: 523 TERKLLKEIVKFAKNPVKSRVVPPDVISKFRDKLNEIESEVGDVMKMEAQEKQVIASENQ 582

Query: 758 -KKGKAHLK 765
            KK +  +K
Sbjct: 583 VKKAEKIIK 591


>gi|160942681|ref|ZP_02089924.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446036|gb|EDP23039.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii
           M21/2]
          Length = 641

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 69/203 (33%), Gaps = 30/203 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT    E+EQ    I+             V++    + V+ +   +    +   
Sbjct: 180 QNLMFSAT-MPAEIEQLAAGILHDPAF--------VKVDPVSSTVDRIQQSLYYVEKGNK 230

Query: 584 R----------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +                 L+   TK  A+ + + L ++ I    +H       R+  + D
Sbjct: 231 KLLLPWLIKNLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALED 290

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + GK  VLV  ++   G+DI E   V   D           + +  IGR AR       
Sbjct: 291 FKSGKTRVLVATDIAARGIDISELSHVFNYD-----LPEVPETYVHRIGRTARAGADGTA 345

Query: 688 LYADTITKSIQLAIDETTRRREK 710
           +      +   LA  E   RR+ 
Sbjct: 346 VSFCAPEEQEYLAGIEKLNRRKI 368


>gi|160937140|ref|ZP_02084503.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440041|gb|EDP17789.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
           BAA-613]
          Length = 569

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 100/259 (38%), Gaps = 35/259 (13%)

Query: 524 TTIVVSAT--PGSWELEQC--QGIIVEQIIRP----TGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      E+ +   +  +  ++I+       +     E++  + +VE +   +
Sbjct: 180 QTLMFSATMPQAIAEIARKFQKDPVTVRVIKKELTVPKVTQYYYEVKP-KNKVEVMSRLL 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++ A +    ++   TKR  +DL + L  R      +H ++K ++R  ++   R G+ D+
Sbjct: 239 DMYAPK--LSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQVQRDRVMDSFRNGRTDI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+D+ +   V   D       +     +  IGR  R        ++  + K
Sbjct: 297 LVATDVAARGIDVGDVEAVFNYD-----IPQDDEYYVHRIGRTGRAGREG-KAFSLVMGK 350

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
            +          R+ Q     K  I PQ++   + ++ +             +D  Q  L
Sbjct: 351 EVYKL-------RDIQ--RYCKTKIIPQAIP-SLNDITE-------IKVEKILDQVQEVL 393

Query: 756 SKKKGKAHLKSLRKQ-MHL 773
           +       +  + K+ M  
Sbjct: 394 NDTDLTKMVNIIEKKLMEE 412


>gi|302038923|ref|YP_003799245.1| DEAd-box RNA helicase [Candidatus Nitrospira defluvii]
 gi|300606987|emb|CBK43320.1| DEAD-box RNA helicase [Candidatus Nitrospira defluvii]
          Length = 576

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 16/170 (9%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+   T+   +++T  L  R  R   +H  +  ++R  +++  R G+ ++LV  ++   
Sbjct: 264 ALVFCRTRLEVDEVTAALNGRGYRAEAIHGGMSQVQRDRVMQAFRSGQTELLVATDVAAR 323

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLDIP    V   D        S    +  IGR  R       +            I+  
Sbjct: 324 GLDIPSVSHVINYD-----LPSSLEVYVHRIGRTGRAGREGAAMTI----------IEPR 368

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
            +R  + +E + K  I   +V   + +++   L    A+   +++A +L 
Sbjct: 369 EQRLLRAVEQHTKAKITVAAVP-SLGDLLAKRLERTKASIQETLEAGELE 417


>gi|299471815|emb|CBN79482.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 660

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 77/208 (37%), Gaps = 12/208 (5%)

Query: 489 GDFHRKATLAEYGFR-LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ 547
                K    + G R L    D    +       +  T++ SAT      +  + ++V+ 
Sbjct: 371 HFDLCKYICLDEGDRMLDMGFDEEVQKIMNHFKQQRQTLLFSATMPQKFQDFAKDVLVKP 430

Query: 548 IIRPTGL-----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           ++   G      +D   E+   + Q   +   +    +    + +    K+  +D+ EYL
Sbjct: 431 VLVNVGRAGAANLDVIQEVEYVK-QEAKIVYLLECLQKTAPPVCIFCEKKQDVDDIHEYL 489

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
             + +    +H   +  ER E I+  + G  DVL+  ++  +GLD P+   V   D   E
Sbjct: 490 LLKGVDAVSIHGGKEQEERNEAIKLFKEGVKDVLIATDIAAKGLDFPDIQHVINFDMPDE 549

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYA 690
                  + +  IGR  R   + V    
Sbjct: 550 -----IENYVHRIGRTGRCGKTGVATTF 572


>gi|255543078|ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223548563|gb|EEF50054.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 772

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++     +G + ++   TKR A++++  L   +I    +H ++   +R   +   R 
Sbjct: 356 ILSDLVTVYAKGGKTIIFTQTKRDADEVSMVLT-NSIASEALHGDISQHQRERTLNGFRQ 414

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GKF VLV  ++   GLDIP   LV               + +   GR  R       +
Sbjct: 415 GKFTVLVATDVASRGLDIPNVDLVI-----HYELPNDPETFVHRSGRTGRAGKEGTAV 467


>gi|24374114|ref|NP_718157.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24348604|gb|AAN55601.1|AE015698_9 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 475

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 54/273 (19%), Positives = 90/273 (32%), Gaps = 35/273 (12%)

Query: 496 TLAEYGFR---------LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIV 545
            + + GF          LP    N  L F      +   +  +A P + E+E   +    
Sbjct: 158 RMLDMGFIEDINNIIEKLPEQRQN--LLFSATLSKQVKALAKTAIPDAIEIEISRKNAAS 215

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL--RILLTVLTKRMAEDLTEYLY 603
            QI +    VD            +     ++   ++    + L+ + TK  A  L   L 
Sbjct: 216 TQIDQWLTTVDK-----------DRKSALLSHLIKENNWAQALIFIQTKHGAAKLVSQLE 264

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +R I     HS      R +++ D + GK   LV   ++  G+DI     V   D   E 
Sbjct: 265 KRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVATGVVSRGIDIDALERVINYDLPDE- 323

Query: 664 FLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
                   I  IGR  R  N    I +          AI+   RR    +E        P
Sbjct: 324 ----ADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIE---RRLGHIIERKNIEGFEP 376

Query: 723 -QSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
            ++V   I++ +       A   N +   +  +
Sbjct: 377 KKAVPISILDFVPKSASRSAHKPNNTAAVKDQA 409


>gi|46143736|ref|ZP_00134588.2| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307256578|ref|ZP_07538359.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864988|gb|EFM96890.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 406

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   E++  YL     RV  +  ++   +R+ ++     G+ D+LV  ++  
Sbjct: 255 RCMIFANTKHKCEEIWNYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLDILVATDVAA 314

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAID 702
            GL IPE   V   D             +  IGR  R   S   I +A         AI+
Sbjct: 315 RGLHIPEVTHVFNYD-----LPDDCEDYVHRIGRTGRAGESGHSISFACERYAVNLPAIE 369


>gi|329116940|ref|ZP_08245657.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis
           NCFD 2020]
 gi|326907345|gb|EGE54259.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis
           NCFD 2020]
          Length = 537

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 98/262 (37%), Gaps = 25/262 (9%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT   P      +         I+   L +  VE    R + ++ +D +     
Sbjct: 176 QTLLFSATMPAPIKQIGVKFMKEPEHVQIKNKELTNVNVEQFYVRVKEQEKFDTMTRLMD 235

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV 
Sbjct: 236 VDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI +   V   D       +   S +  IGR  R   S   +   +  +   
Sbjct: 296 TDVAARGLDISDVTHVYNYDIT-----QDPESYVHRIGRTGRAGKSGESITFVSPNEMGY 350

Query: 699 LAIDETTRRREKQL----------EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           L++ E     +KQ+              K  +  + ++    +       +      I +
Sbjct: 351 LSMIENL--TKKQMTPLKPATAEEAFQAKKKVALKKIERDFADETIRSNFDKFKDDAIQL 408

Query: 749 DAQQLSLSKKKGKAHLKSLRKQ 770
            ++    + ++   ++ SL  Q
Sbjct: 409 ASEF---TPEELALYILSLTVQ 427


>gi|302769696|ref|XP_002968267.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
 gi|300163911|gb|EFJ30521.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
          Length = 614

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 7/133 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++     +G + ++   TKR  +D+   +  R+I    +H ++   +R + +   R 
Sbjct: 240 LLADLLTVYAKGGKAIVFTKTKRDTDDVAAVMS-RSIGCEALHGDISQYQREKTLSGFRD 298

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+F+VLV  ++   GLDIP   L+   +   +       + +   GR  R       +  
Sbjct: 299 GRFNVLVATDVAARGLDIPNVDLIVHYEVPGDS-----ETFVHRSGRTGRAGKKGTCILM 353

Query: 691 DTIT-KSIQLAID 702
            T+  K +   I+
Sbjct: 354 YTLNQKRVLRTIE 366


>gi|197284022|ref|YP_002149894.1| ATP-dependent RNA helicase DbpA [Proteus mirabilis HI4320]
 gi|194681509|emb|CAR40383.1| ATP-independent RNA helicase [Proteus mirabilis HI4320]
          Length = 457

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 90/255 (35%), Gaps = 33/255 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ + ++   D        +  +   +  R     + GF      D+      
Sbjct: 129 TPGRLLDHLNKQTVTLAD--------VKTLVLDEADRM---LDMGF-----FDDISDIIS 172

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           +    +  T++ SAT      +  + I  + +       D   E+ +   Q  ++     
Sbjct: 173 Q-MSTQRQTLLFSATWPDEIAKISRKIQQDPVTIEINSPD---ELPAVEQQFYEISRYGK 228

Query: 577 LAA-------QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           L          Q    ++   TKR  +D+ E L E N  V  +H +++  ER + +    
Sbjct: 229 LGLLQKLLSHHQPNSCVVFCNTKRDCQDVYEALTESNQSVLALHGDMEQKERDQTLIRFA 288

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G   VLV  ++   GLDI    +V   +   +  +      I  IGR AR   S   I 
Sbjct: 289 NGSCRVLVATDVAARGLDIKALEMVINYELSHDPEVH-----IHRIGRTARAGESGLAIS 343

Query: 689 YADTITKSIQLAIDE 703
           +          A++E
Sbjct: 344 FCAPEEIPRANALEE 358


>gi|315637497|ref|ZP_07892707.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
 gi|315478215|gb|EFU68938.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
          Length = 435

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 12/242 (4%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINL 577
            +   ++ SAT  +   +   G++   +   +         VE        +   + +  
Sbjct: 178 KQRQNLLFSATFSNEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHHVDKDRKKELLLH 237

Query: 578 AAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              +    ++L+   TK  A  L+E L +  I    +H       R + + D + GK  V
Sbjct: 238 LVNKNSWQQVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRV 297

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   G+DI +   V   +             +  IGR  R  N+ + I       
Sbjct: 298 LVATDIAARGIDIEQLPHVVNFE-----LPNVAEDYVHRIGRTGRAGNNGIAISLVCVDE 352

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
                 I+   +++ K++E N    +NP    E I    +     + +  N  +  +  +
Sbjct: 353 HEYLFGIERLIKQKIKKVEINGFK-VNPNIKAEPIGNRSNRGNKANNSNQNRKVKPKNEN 411

Query: 755 LS 756
            S
Sbjct: 412 SS 413


>gi|114669834|ref|XP_001147587.1| PREDICTED: DEAD box polypeptide 42 protein isoform 4 [Pan
           troglodytes]
          Length = 775

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 270 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 329

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 330 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 388

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 389 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 443

Query: 696 S 696
           S
Sbjct: 444 S 444


>gi|134111599|ref|XP_775335.1| hypothetical protein CNBE0530 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257994|gb|EAL20688.1| hypothetical protein CNBE0530 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 605

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 86/227 (37%), Gaps = 32/227 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT     + +     +   +R T   D      SA  ++E + + ++    +  
Sbjct: 365 QTVMFSAT-WPESVRRLASTFLNNPLRITVGSDEL----SANKRIEQIVEVLDNPRDKDF 419

Query: 584 R---------------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           R                     IL+  L K+ A+ L   +      V  +H ++    R 
Sbjct: 420 RLTHHLKAHLKVHPNSKTSPTRILVFALYKKEAQRLEYTIRRAGYAVGALHGDMTQEARF 479

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           + +   + G+ +VLV  ++   GLDIP+ GLV  +      F  +    +   GR  R  
Sbjct: 480 KALEAFKTGQQNVLVATDVAARGLDIPDVGLVINV-----TFPLTTEDFVHRCGRTGRAG 534

Query: 683 NS-KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            + K + +         LA +     R+   E  K+ +  P ++K+K
Sbjct: 535 KTGKAVTFFTGENHEKSLAGEFMRVLRDVGAEIPKEMDRFPTTIKKK 581


>gi|289825492|ref|ZP_06544699.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 415

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +VLV  ++  
Sbjct: 250 RSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ--LAI 701
            G+DIP+   V   D  + G   +    I   GRA R   +  ++ A      ++    I
Sbjct: 310 RGIDIPDVSHVINFDMPRSG--DTYLHRIGRTGRAGRKGTAISLVEAHDHLLLLKIGRYI 367

Query: 702 DETTRRREK 710
           +E  + R  
Sbjct: 368 EEPLKARVI 376


>gi|242002440|ref|XP_002435863.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215499199|gb|EEC08693.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 494

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 69/203 (33%), Gaps = 25/203 (12%)

Query: 524 TTIVVSAT--PGSWELEQC--QGIIVEQIIRPTGLVDPP------VEIRSARTQVEDVYD 573
            T++ SAT      EL +      I   + R     +        VE    R+ + D+ +
Sbjct: 267 QTLMFSATFPKKVQELARKFLDNYIFLAVGRVGSTSENITQKVVWVEEHDKRSFLLDLLN 326

Query: 574 EINLAAQQGLR-----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
              L             L  V TK+ A+ L  +L +    V  +H +    ER + +   
Sbjct: 327 AAGLRTGSQAALSDSLTLTFVETKKGADSLEHFLMKEGYPVTSIHGDRSQREREDALWSF 386

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           R G   +LV   +   GLDIP    V   D             +  IGR  R  N     
Sbjct: 387 RKGHTPILVATAVAARGLDIPNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLGLAT 441

Query: 688 LYADTITKSIQ----LAIDETTR 706
            + +   +++       I ET +
Sbjct: 442 SFFNEKNRNMALDLVELITETKQ 464


>gi|145547669|ref|XP_001459516.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124427341|emb|CAK92119.1| unnamed protein product [Paramecium tetraurelia]
          Length = 957

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 85/216 (39%), Gaps = 16/216 (7%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +DE  V + +I+ +   +  R     + GF  P   D      E+       TI++SAT
Sbjct: 213 LIDEGMVNLNKITMLILDEADRM---LDMGFE-PQVRDIVSTIRED-----RQTILLSAT 263

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL--RILLTV 589
             +   +  +    + I+   G   P  +      Q E ++  +N+        ++L+  
Sbjct: 264 WPNEVQQLSKEFCYDPILVKIGKGAPITQKIICTGQKEKLHVLMNVLDDLIYTDKVLIFA 323

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            TK+  EDL++ L ++      +H +    +R  I++  +     ++   ++   GLD+ 
Sbjct: 324 ETKKRCEDLSQSLTKQGYFCISLHGDKSQDQRDAIMKQFKDSNTRLICATDIASRGLDVK 383

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +  +V   D     F +S    I  IGR  R     
Sbjct: 384 DITVVVNYD-----FPKSFDDYIHRIGRTGRAGAHG 414


>gi|67968989|dbj|BAE00851.1| unnamed protein product [Macaca fascicularis]
 gi|67969240|dbj|BAE00973.1| unnamed protein product [Macaca fascicularis]
          Length = 483

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 72/208 (34%), Gaps = 25/208 (12%)

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GF   S    R L  E         ++ SAT      E       E+II    ++    E
Sbjct: 257 GFSDHSIRIQRALPSEC------QMLLFSAT-----FEDSVWHFAERIIPDPNVIKLRKE 305

Query: 561 IRSARTQVEDVYDEINLAAQQGL------------RILLTVLTKRMAEDLTEYLYERNIR 608
                  +   Y        +              + ++   T+R A+ LT  + +   +
Sbjct: 306 -ELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQ 364

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD-KEGFLRS 667
           V  +  E+   +R  II+  R GK  VL+  N+   G+D+ +  +V   D   K+G    
Sbjct: 365 VSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPD 424

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITK 695
             + +  IGR  R     +      + K
Sbjct: 425 YETYLHRIGRTGRFGKKGLAFNMIEVDK 452


>gi|61679843|pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
          Length = 400

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 16/182 (8%)

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           LP    ++ L F     L     +V      +E+   + + ++ I +        VE R 
Sbjct: 191 LPP--THQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQ----YYAFVEERQ 244

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
               +  ++ ++ +      + ++   +    E L + + +      Y H+ +K  ER +
Sbjct: 245 KLHCLNTLFSKLQI-----NQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNK 299

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  + R GK   LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 300 VFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD-----FPKTAETYLHRIGRSGRFGH 354

Query: 684 SK 685
             
Sbjct: 355 LG 356


>gi|47097038|ref|ZP_00234610.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254828606|ref|ZP_05233293.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N3-165]
 gi|254898593|ref|ZP_05258517.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J0161]
 gi|254911917|ref|ZP_05261929.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J2818]
 gi|254936243|ref|ZP_05267940.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes F6900]
 gi|47014573|gb|EAL05534.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601004|gb|EEW14329.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N3-165]
 gi|258608833|gb|EEW21441.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes F6900]
 gi|293589878|gb|EFF98212.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J2818]
          Length = 470

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 87/253 (34%), Gaps = 33/253 (13%)

Query: 521 LRPTTIVVSATPGSWELE---QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
            +   +  SAT    E++   +        I   +   +P + +     Q ++    +  
Sbjct: 171 KQRQNLFFSAT-MPEEMQGLIKRYQDDPMVIEMASEKTNPILHV---EIQTDNKEKTLKD 226

Query: 578 A--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +     ++   TK   ++LT+ L   +++   +H  ++  +R   + D + GK   
Sbjct: 227 VLITENPDSAIIFCNTKNQVDELTDLL---DVKASKIHGGLRQEDRFRAMDDFKSGKSRF 283

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTIT 694
           L+  ++   G+D+    LV   D   E     K + +  IGR  R   S K I +  T  
Sbjct: 284 LIATDVAGRGIDVDNVSLVINYDLPIE-----KENYVHRIGRTGRAGKSGKAISFVKTNE 338

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
             +   I+E                I     K++   VI+    EDA             
Sbjct: 339 NPLLRDIEEM-----------LDVTIE----KKRKPTVIEVKANEDAFRKKQQKRPTIKK 383

Query: 755 LSKKKGKAHLKSL 767
              +K   ++  L
Sbjct: 384 ARGEKLNKNIMKL 396


>gi|82705769|ref|XP_727104.1| eukaryotic initiation factor 4a-3 [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23482794|gb|EAA18669.1| eukaryotic initiation factor 4a-3 [Plasmodium yoelii yoelii]
          Length = 390

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 80/199 (40%), Gaps = 22/199 (11%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE---IRSARTQVE- 569
            +       ++ SAT     LE     +   V+ +++   L    ++   +   + Q + 
Sbjct: 185 RFLSPNTQIVLSSATLPHEVLEITNKFMHNPVKILVKRDELTLEGIKQFFVSIEKEQWKY 244

Query: 570 ----DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
               D+Y+ + +      + ++   TK   + L + + E N  V  MH+ +   ER +I+
Sbjct: 245 ETLADLYESLTIT-----QAVVFCNTKLKVDWLAKKMQESNFTVCKMHAGMSQSERDDIM 299

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R  K+ VL+  ++   GLD+ E  LV   D        S+ S I  IGR+ R     
Sbjct: 300 LKFRQCKYRVLISTDIWGRGLDVHEVSLVVNYD-----LPNSRESYIHRIGRSGRFGRKG 354

Query: 686 V-ILYADTITKSIQLAIDE 703
           V I +       I   I++
Sbjct: 355 VAINFVKNDDIKILRDIEQ 373


>gi|302327262|gb|ADL26463.1| ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 739

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V TK+   ++ E L  R   V  ++ ++    R   I  L++GK D++V  ++   
Sbjct: 303 VLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVATDVAAR 362

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           G+D+    LV   D           S +  IGR  R   S   IL+     K +   I++
Sbjct: 363 GIDVDRISLVVNYD-----IPYDTESYVHRIGRTGRAGRSGNAILFITPREKRMLKTIEK 417

Query: 704 TTRR 707
            TR+
Sbjct: 418 ATRQ 421


>gi|255954845|ref|XP_002568175.1| Pc21g11430 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589886|emb|CAP96040.1| Pc21g11430 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 496

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 550 RPTGLVDPPVEI---RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN 606
           R    +   VE+   R    ++  +  +     +   ++L+  L K+ A  +   +  + 
Sbjct: 296 RANTRIKQVVEVVDGREKEGRLVQLLTKSQRGQKSPEKVLVFCLYKKEAMRIENLIRNKG 355

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
             V  +H ++   +R   +   + G   VL+  ++   GLDIP   LV  +      F  
Sbjct: 356 FAVAGIHGDLNQSDRFRNLDAFKKGNATVLIATDVAARGLDIPNVKLVINV-----TFPL 410

Query: 667 SKTSLIQTIGRAARNVNSKVILYADTITK 695
           +    +  IGR  R     + +   T   
Sbjct: 411 TVEDYVHRIGRTGRAGADGLAITMFTEND 439


>gi|198437555|ref|XP_002123307.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
           [Ciona intestinalis]
          Length = 461

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 64/171 (37%), Gaps = 15/171 (8%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E+   + + ++ + +    V+   ++           + +    Q    I +   +  
Sbjct: 273 PYEINLMEELTLKGVSQFYAYVEEKKKVH--------CLNTLFSKLQINQSI-IFCNSTH 323

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L + + E      Y+H+ +K   R  +  D R G    LV  +L   G+DI    +
Sbjct: 324 RVELLAKKITELGYSCFYIHARMKQEYRNRVFHDFRQGMCRNLVCSDLFTRGIDIQAVNV 383

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDE 703
           V   D     F +   + +  IGR+ R  +  + +   T      LA I+E
Sbjct: 384 VINFD-----FPKMPETYLHRIGRSGRYGHLGLAINLITYDDRFSLARIEE 429


>gi|221055405|ref|XP_002258841.1| ATP-dependent RNA helicase [Plasmodium knowlesi strain H]
 gi|193808911|emb|CAQ39614.1| ATP-dependent RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 433

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 18/213 (8%)

Query: 517 EWNCLRPTTIVVSAT-PG------SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           ++       ++ SAT P          L     I +   +   G+      ++    Q  
Sbjct: 228 KFLPKEKQILMYSATFPVTVKEFRQIYLSDAHEINLMDELTLKGITQYYAFVK--ERQKV 285

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
              + +    Q     ++   +    E L + + E      Y+H+ +    R  +  D R
Sbjct: 286 HCLNTLFAKLQINQ-AIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFR 344

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G    LV  +L   G+DI    +V   D     F ++  + +  IGR+ R  +  + + 
Sbjct: 345 NGACRCLVSSDLFTRGIDIQSVNVVINFD-----FPKNSETYLHRIGRSGRYGHLGLAIN 399

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
             T      L   E     E Q      + I+P
Sbjct: 400 LITYEDRFNLYKIELELGTEIQ---PIPNEIDP 429


>gi|70945363|ref|XP_742509.1| ATP-dependent RNA helicase [Plasmodium chabaudi chabaudi]
 gi|56521533|emb|CAH79576.1| ATP-dependent RNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 429

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 18/213 (8%)

Query: 517 EWNCLRPTTIVVSAT-PG------SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           ++       ++ SAT P          L     I +   +   G+      ++    Q  
Sbjct: 224 KFLPKEKQILMYSATFPVTVKEFRQIYLSDAHEINLMDELTLKGITQYYAFVK--ERQKV 281

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
              + +    Q     ++   +    E L + + E      Y+H+ +    R  +  D R
Sbjct: 282 HCLNTLFAKLQINQ-AIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFR 340

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G    LV  +L   G+DI    +V   D     F ++  + +  IGR+ R  +  + + 
Sbjct: 341 NGACRCLVSSDLFTRGIDIQSVNVVINFD-----FPKNSETYLHRIGRSGRYGHLGLAIN 395

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
             T      L   E     E Q      + I+P
Sbjct: 396 LITYEDRFNLYKIELELGTEIQ---PIPNEIDP 425


>gi|45185883|ref|NP_983599.1| ACR197Wp [Ashbya gossypii ATCC 10895]
 gi|74694822|sp|Q75BS4|DHH1_ASHGO RecName: Full=ATP-dependent RNA helicase DHH1
 gi|44981673|gb|AAS51423.1| ACR197Wp [Ashbya gossypii ATCC 10895]
          Length = 484

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 16/182 (8%)

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           LP   +++ L F     L     +V      +E+     + ++ I +        VE R 
Sbjct: 199 LP--QNHQSLLFSATFPLTVKEFMVKHLNKPYEINLMDELTLKGITQ----YYAFVEERQ 252

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
               +  ++ ++ +      + ++   +    E L + + +      Y H+ +K  ER +
Sbjct: 253 KLHCLNTLFSKLQI-----NQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNK 307

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  + R GK   LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 308 VFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD-----FPKTAETYLHRIGRSGRFGH 362

Query: 684 SK 685
             
Sbjct: 363 LG 364


>gi|117920819|ref|YP_870011.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613151|gb|ABK48605.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 491

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 86/275 (31%), Gaps = 35/275 (12%)

Query: 496 TLAEYGFR---------LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIV 545
            + + GF          LP    N  L F      +   +  SA P + E+E   +    
Sbjct: 158 RMLDMGFIEDINSIIEKLPEQRQN--LLFSATLSKQVKALAKSAIPDAIEIEISRKSAAS 215

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL--RILLTVLTKRMAEDLTEYLY 603
             I +    VD            +     ++   Q+    + L+ + TK  A  L   L 
Sbjct: 216 THIDQWLTTVDK-----------DKKSALLSHLIQEQNWSQALIFIQTKHGAAKLVSQLE 264

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
           +R I     HS      R +++ D + GK   LV   +   G+DI     V   D   E 
Sbjct: 265 KRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFLVATGVASRGIDIDALARVINYDLPDE- 323

Query: 664 FLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
                   I  IGR  R  N    I +          AI+   RR    +   +     P
Sbjct: 324 ----ADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIE---RRLGHVIVRREIAGFEP 376

Query: 723 QSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLS 756
           + V    I++ +     +     N   +    S  
Sbjct: 377 KKVVPISILDFVPKSASKTERKPNSPAETNLQSRP 411


>gi|325297384|ref|YP_004257301.1| DEAD/DEAH box helicase domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324316937|gb|ADY34828.1| DEAD/DEAH box helicase domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 439

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 65/196 (33%), Gaps = 19/196 (9%)

Query: 496 TLAEYGF--RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQ--IIRP 551
              E+GF   + S M   P              ++SAT             V +   +RP
Sbjct: 144 KCLEFGFQEEMASVMGQLP--------RIERRFLLSATDAEEIPRFTGLRRVRKLDFLRP 195

Query: 552 TGLVDPPVEIRSARTQVEDVYDEINLAAQQ--GLRILLTVLTKRMAEDLTEYLYERNIRV 609
             ++   + +    + V+D  D +            L+    +   E + EYL    +  
Sbjct: 196 EHVLSSRLHLYKVVSPVKDKLDTLFRLLCCIGNESTLVFCNHRESVERVGEYLRRMKMYC 255

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
              H  +   ER   +   R G   VLV  +L   GLDIPE   V            S+ 
Sbjct: 256 EVFHGGMGQDERERALYKFRNGSCPVLVSTDLAARGLDIPEIKNVV-----HYHLPVSED 310

Query: 670 SLIQTIGRAARNVNSK 685
           S I   GR AR  N  
Sbjct: 311 SFIHRNGRTARWENEG 326


>gi|302653126|ref|XP_003018394.1| hypothetical protein TRV_07588 [Trichophyton verrucosum HKI 0517]
 gi|291182037|gb|EFE37749.1| hypothetical protein TRV_07588 [Trichophyton verrucosum HKI 0517]
          Length = 530

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 22/197 (11%)

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
             +E+     + +  I +    V+   ++           + +    Q    I +   + 
Sbjct: 266 NPYEINLMDELTLRGITQYYAFVEERQKVH--------CLNTLFSKLQINQSI-IFCNST 316

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
              E L + + E      Y H+ +    R  +  D R G    LV  +LL  G+DI    
Sbjct: 317 NRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVN 376

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           +V   D     F ++  + +  IGR+ R  +  + +          L   E     E Q 
Sbjct: 377 VVINFD-----FPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKIEQELGTEIQ- 430

Query: 713 EHNKKHNINPQSVKEKI 729
                    P S+ +K+
Sbjct: 431 -------PIPPSIDKKL 440


>gi|99081650|ref|YP_613804.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040]
 gi|99037930|gb|ABF64542.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040]
          Length = 493

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 78/261 (29%), Gaps = 22/261 (8%)

Query: 524 TTIVVSATPGSWELEQ------CQGIIVEQIIRPTGLVDPPVEIRSARTQVED------- 570
            T+  SAT    E+E+           VE   + T   +    +   +   +D       
Sbjct: 180 QTLFFSATMAP-EIERITNTFLSGPERVEIARQATTSENIEQAVVMFKASRKDREGSEKR 238

Query: 571 --VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             + + IN   +     ++    K   + + + L +       +H ++   +R + +   
Sbjct: 239 RVLRELINQEGEAVQNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLDGF 298

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G   +LV  ++   GLD+P    V   D             +  IGR  R       +
Sbjct: 299 RDGTLKILVASDVAARGLDVPSVSHVFNFDVPG-----HAEDYVHRIGRTGRAGRDGKAI 353

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
              +      L   E   ++E     N      P+    K  +  D       + +  + 
Sbjct: 354 TLCSPRDEKALDAVEGLVQKEITRLENPVK-PTPRKTATKDEDAGDKPKPARRSRSKAAS 412

Query: 749 DAQQLSLSKKKGKAHLKSLRK 769
                + + +        +  
Sbjct: 413 AKTDATPTPEAANDAAPQVEA 433


>gi|320582192|gb|EFW96410.1| ATP-dependent RNA helicase, putative [Pichia angusta DL-1]
          Length = 428

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 78/218 (35%), Gaps = 32/218 (14%)

Query: 506 SCMDNRPLRFEEW-NCLRPTTIVVSAT--------------PGSW-----ELEQCQGIIV 545
           S  D+    FE   N  +  T++ +AT              PG       EL+    + +
Sbjct: 163 SFTDHLQTCFEALPNSNKRQTLLFTATVTDSVRALKDRPVAPGKQPVFLHELDNVDTVKI 222

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
              +R    V  PV ++ +      +++ +     +    ++ V     AE L   L   
Sbjct: 223 PSTLR-LLYVLAPVVVKESM-----LHNILTNEDYKESTAIVFVNRSETAEILRRLLRHL 276

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +    +HSE+   ER   +   R G   VLV  +L   GLDIP   LV   D  ++   
Sbjct: 277 EVTTTSLHSEMPQSERTNSLHRFRAGAARVLVATDLASRGLDIPSVELVINFDIPRD--- 333

Query: 666 RSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAID 702
                 +  +GR AR       I        S  LAI+
Sbjct: 334 --PDDYVHRVGRTARAGRKGDAISMVTPNDLSRILAIE 369


>gi|298293432|ref|YP_003695371.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
 gi|296929943|gb|ADH90752.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
          Length = 557

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 65/198 (32%), Gaps = 29/198 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            +   +  SAT    E+E+    ++   +R        V +       + +  ++    +
Sbjct: 184 HKRRNLFFSAT-MPREIEKLADTLLSDPVR--------VAVTPVAKTADKIEQKVFFTDR 234

Query: 581 QGL--------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            G               R L+   TK  A+ + + L    I    +H      +R   + 
Sbjct: 235 AGKPNLLVEVLGEPTLDRALVFSRTKHGADRVVKSLAGAGINAEAIHGNKSQPQRERALA 294

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R G   VLV  ++   G+D+P    V   D           S +  IGR AR     +
Sbjct: 295 AFRQGVVKVLVATDIAARGIDVPGVSHVINYD-----LPNVPESYVHRIGRTARAGREGI 349

Query: 687 -ILYADTITKSIQLAIDE 703
            I + D   +     I+ 
Sbjct: 350 AISFCDGEERPFLRDIER 367


>gi|260950467|ref|XP_002619530.1| hypothetical protein CLUG_00689 [Clavispora lusitaniae ATCC 42720]
 gi|238847102|gb|EEQ36566.1| hypothetical protein CLUG_00689 [Clavispora lusitaniae ATCC 42720]
          Length = 470

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TKR A+ L + + +    V  +H  +   ER  +I D R G+  VL+  N+L  G
Sbjct: 322 IIFVGTKRTADMLYQKMKQEGHTVSVLHGSLDNAERDRLIDDFREGRSKVLITTNVLARG 381

Query: 646 LDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           +DI    +V   D   DK+G     ++ +  IGR  R     V +      +S +
Sbjct: 382 IDIASVSMVVNYDLPVDKDGKPD-PSTYLHRIGRTGRFGRVGVSISFVHDKRSYE 435


>gi|186473980|ref|YP_001861322.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184196312|gb|ACC74276.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 481

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 74/211 (35%), Gaps = 17/211 (8%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVE-DVYDEINL 577
            T++ SAT            +   V   + P       +   +     + + D++  +  
Sbjct: 181 QTLLFSATFSDDIRAMAANFLRGPVHISVSPPNATASKIRQWVVPVDKRNKPDLFMHLVA 240

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                   L+ V T+   + L   L E    V  +H +     R+  +   + G+  +LV
Sbjct: 241 ENNWDH-ALVFVKTRTGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKAGQVHMLV 299

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI    LV  +D             +  IGR  R   S V +      ++ 
Sbjct: 300 ATDVAARGLDIDHLPLVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADEAP 354

Query: 698 QLAIDETTRR----REKQLEHNKKHNINPQS 724
           QLA  E   R    RE++     +H   PQ+
Sbjct: 355 QLAAIEALIRQTLPREEEPGFEAEHR-VPQT 384


>gi|109109203|ref|XP_001112142.1| PREDICTED: ATP-dependent RNA helicase DDX25-like [Macaca mulatta]
          Length = 483

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 72/208 (34%), Gaps = 25/208 (12%)

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GF   S    R L  E         ++ SAT      E       E+II    ++    E
Sbjct: 257 GFSDHSIRIQRALPSEC------QMLLFSAT-----FEDSVWHFAERIIPDPNVIKLRKE 305

Query: 561 IRSARTQVEDVYDEINLAAQQGL------------RILLTVLTKRMAEDLTEYLYERNIR 608
                  +   Y        +              + ++   T+R A+ LT  + +   +
Sbjct: 306 -ELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQ 364

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD-KEGFLRS 667
           V  +  E+   +R  II+  R GK  VL+  N+   G+D+ +  +V   D   K+G    
Sbjct: 365 VSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPD 424

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITK 695
             + +  IGR  R     +      + K
Sbjct: 425 YETYLHRIGRTGRFGKKGLAFNMIEVDK 452


>gi|303237281|ref|ZP_07323851.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens
           FB035-09AN]
 gi|302482668|gb|EFL45693.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens
           FB035-09AN]
          Length = 565

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 91/250 (36%), Gaps = 32/250 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG- 582
            TI+ SAT     + +    + + ++    ++   V  + A  ++  +    +   + G 
Sbjct: 183 QTIMFSAT-----MPKKIEDLAQTLLTNPSVIKLAVS-KPAE-KIHQLAYVCHETQKMGI 235

Query: 583 ----------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      R+++   +K+  + +   L ++ I    MHS++   ER E++   + G+
Sbjct: 236 IKDIFKAGNLQRVIIFSGSKQKVKQIALSLNQKKINCGQMHSDLAQAERDEMMFKFKSGQ 295

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            DVLV  ++L  G+DI +  +V   D             +  IGR AR       I + +
Sbjct: 296 IDVLVATDILARGIDIDDIAMVINYDV-----PHDAEDYVHRIGRTARADRKGSAITFVN 350

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                    I       EK LE   +    P+ + E + + +         +        
Sbjct: 351 EDDIYYFQQI-------EKFLEKEVEKAELPEGLGEGL-DYVSRNKERRKTSAKSRRRKD 402

Query: 752 QLSLSKKKGK 761
           +   S K  K
Sbjct: 403 RDQQSHKDKK 412


>gi|302782315|ref|XP_002972931.1| hypothetical protein SELMODRAFT_98552 [Selaginella moellendorffii]
 gi|300159532|gb|EFJ26152.1| hypothetical protein SELMODRAFT_98552 [Selaginella moellendorffii]
          Length = 534

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 74/208 (35%), Gaps = 21/208 (10%)

Query: 524 TTIVVSAT-PGSWEL-------EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E        +  +  I    ++    +   VE+ +   + + +   +
Sbjct: 270 QTLYWSATWPKDVEQLANQFLHDPYKVTIGSSSLKANHSIAQHVEVVNDYEKYQKLIKLL 329

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +     G +IL+ + TKR  + +T+ L         +H +    ER  ++ + + GK  +
Sbjct: 330 DEFMDGG-KILIFMETKRGCDQVTKQLRMEGWPALSIHGDKSQAERDWVLSEFKTGKSPI 388

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  S    +  IGR  R           T++ 
Sbjct: 389 MTATDVAARGLDVKDIRYVINYD-----FPGSCEDYVHRIGRTGRAGAKGTAYTFFTVSN 443

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQ 723
           +          R    +       I P+
Sbjct: 444 AKHA-------RELVSILSEAGQRITPE 464


>gi|254476293|ref|ZP_05089679.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
 gi|214030536|gb|EEB71371.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
          Length = 501

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 63/198 (31%), Gaps = 23/198 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR-------------PTGLVDPPVEIRSART--QV 568
            T+  SAT    E+E+     +    R               G+V      R      + 
Sbjct: 180 QTLFFSATMAP-EIERITNTFLSAPERIEVARQATTSENITQGVVLFKASRRDREGSEKR 238

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + +   I+   ++    ++    K   +   + L +       +H ++   +R++ + + 
Sbjct: 239 KLLRHLIDQEGEKCTNAIIFCNRKTDVDICAKSLKKYGYNAAPIHGDLDQSQRMKTLDEF 298

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G    LV  ++   GLD+P    V   D             +  IGR  R       +
Sbjct: 299 REGNLRFLVASDVAARGLDVPTVSHVFNFDV-----PSHAEDYVHRIGRTGRAGRDGTAM 353

Query: 689 YADTITKSIQLAIDETTR 706
                    +  +++  R
Sbjct: 354 MICVPKD--EKNLEDIER 369


>gi|302415451|ref|XP_003005557.1| ATP-dependent RNA helicase dhh-1 [Verticillium albo-atrum VaMs.102]
 gi|261354973|gb|EEY17401.1| ATP-dependent RNA helicase dhh-1 [Verticillium albo-atrum VaMs.102]
          Length = 390

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 27/180 (15%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           +++      ++ SAT                +E+     + +  I +    V+   ++  
Sbjct: 214 QFHPKDRQVMLFSATFPLSVKDFSDKNMANPYEINLMDELTLRGITQYYAFVEEKQKVH- 272

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+++    R  
Sbjct: 273 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNR 324

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 325 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRYGH 379


>gi|307823522|ref|ZP_07653751.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307735507|gb|EFO06355.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 462

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 67/185 (36%), Gaps = 10/185 (5%)

Query: 524 TTIVVSATPGS--WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ- 580
            T++ SAT      E+ Q        +   T   D  +E R  + +     + +      
Sbjct: 180 QTLLFSATYTDPIREISQKFQFKPVSVSIETSHHDSDIEQRFYQVEKSKRTNALGYLLSY 239

Query: 581 -QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +    ++   TKR  +D+   L      V+ +H +++  +R +++         VLV  
Sbjct: 240 YRPESTVVFCNTKRDCQDVASSLENSGFTVQALHGDLEQKDRDQVLVRFSNKSCSVLVAT 299

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ- 698
           ++   GLDI +   V   D             +  IGR  R     + L   T  +  + 
Sbjct: 300 DVAARGLDIKDMQAVINYD-----LPWDPEIYVHRIGRTGRAGKKGLALSLCTEQELNRV 354

Query: 699 LAIDE 703
            AI+E
Sbjct: 355 KAIEE 359


>gi|298674218|ref|YP_003725968.1| DEAD/DEAH box helicase domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298287206|gb|ADI73172.1| DEAD/DEAH box helicase domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 431

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 80/212 (37%), Gaps = 27/212 (12%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS-WELEQCQGIIVEQIIRPTGL 554
            + + GFR     ++  L   +    R TT+  +  PG   ++ +      E I      
Sbjct: 157 EMLDMGFR-----EDIELILSKLPDKRQTTLFSATMPGPIMKMTKKYQDNPELIKTVHKK 211

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQG-----------LRILLTVLTKRMAEDLTEYLY 603
           +  P        QVE  Y E+   ++                L+   TK+  ++L E L 
Sbjct: 212 LTVP--------QVEQTYFEVKERSKPEALCRLTDFYNIKSSLVFCNTKKGVDNLVETLK 263

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            R      +H ++K  +R +++ + + G+ + LV  ++   G+D+    +V   D  ++ 
Sbjct: 264 TRGYLADGLHGDMKQKQRDKVMSNFKNGEIETLVATDVAARGIDVENIEVVFNYDVPQDE 323

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
              S    I   GRA +   +    +   I K
Sbjct: 324 --ESYVHRIGRTGRAGKQGKAFTFAFGKEIYK 353


>gi|242059637|ref|XP_002458964.1| hypothetical protein SORBIDRAFT_03g043450 [Sorghum bicolor]
 gi|241930939|gb|EES04084.1| hypothetical protein SORBIDRAFT_03g043450 [Sorghum bicolor]
          Length = 578

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 64/181 (35%), Gaps = 14/181 (7%)

Query: 524 TTIVVSAT-PGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E           +  I    ++    +   VE+ S   +   +   +
Sbjct: 339 QTLYWSATWPREVEALARQFLQNPYKVTIGSPELKANHSIQQIVEVISDHEKYPRLSKLL 398

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +     G RIL+   TK+  + +T  L         +H +    ER  ++ + + GK  +
Sbjct: 399 SDLMD-GSRILIFFQTKKDCDKITRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPI 457

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  +    I  IGR  R   S       T   
Sbjct: 458 MAATDVAARGLDVKDIKCVINYD-----FPTTLEDYIHRIGRTGRAGASGTAFTFFTHAN 512

Query: 696 S 696
           +
Sbjct: 513 A 513


>gi|261195416|ref|XP_002624112.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis SLH14081]
 gi|239587984|gb|EEQ70627.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis SLH14081]
          Length = 658

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 6/138 (4%)

Query: 568 VEDVYDEIN-LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + D+        A++    L+  +     + LTE      I  RY+ S+     R   + 
Sbjct: 284 INDITVRAWLSRARERKSTLVFGVDIEHVKCLTERFRRFGIDARYITSQTPKDLRTNELE 343

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R  ++ VLV   L  EG DIP    V +    +     SK  LIQ IGR  R    K 
Sbjct: 344 AFRNQEYPVLVNCGLFTEGTDIPNIDCVLLARPTR-----SKNLLIQMIGRGLRLYPGKK 398

Query: 687 ILYADTITKSIQLAIDET 704
             +   +  S+   +  T
Sbjct: 399 NCHIIDMVASLDTGVTTT 416


>gi|2500518|sp|Q40465|IF411_TOBAC RecName: Full=Eukaryotic initiation factor 4A-11; Short=eIF-4A-11;
           AltName: Full=ATP-dependent RNA helicase eIF4A-11
 gi|485987|emb|CAA55737.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 18/198 (9%)

Query: 515 FEEWNCLRP--TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L P     V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 204 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE 263

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             ++E + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 264 EWKLETLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IG + R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGHSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAI 701
            V I +     + +   I
Sbjct: 377 GVSINFVTKDDERMLFDI 394


>gi|328880510|emb|CCA53749.1| ATP-dependent RNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 472

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 5/131 (3%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D +      A +  R+++ + TK   +  T++L    +R   +H       R   +   R
Sbjct: 255 DKFATATEIAARDGRVIMFLATKAAVDRFTKHLLGSGVRAAALHGGKSQPLRTRTLDRFR 314

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+  VLV  N+   G+ + E  LV  +D   +         +   GR AR   S +++ 
Sbjct: 315 SGEVPVLVATNVAARGIHVDELDLVVNVDPPAD-----HKDYLHRGGRTARAGESGLVVT 369

Query: 690 ADTITKSIQLA 700
             T  +   +A
Sbjct: 370 LVTPEERRDVA 380


>gi|239610526|gb|EEQ87513.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis ER-3]
          Length = 658

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 6/138 (4%)

Query: 568 VEDVYDEIN-LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + D+        A++    L+  +     + LTE      I  RY+ S+     R   + 
Sbjct: 284 INDITVRAWLSRARERKSTLVFGVDIEHVKCLTERFRRFGIDARYITSQTPKDLRTNELE 343

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R  ++ VLV   L  EG DIP    V +    +     SK  LIQ IGR  R    K 
Sbjct: 344 AFRNQEYPVLVNCGLFTEGTDIPNIDCVLLARPTR-----SKNLLIQMIGRGLRLYPGKK 398

Query: 687 ILYADTITKSIQLAIDET 704
             +   +  S+   +  T
Sbjct: 399 NCHIIDMVASLDTGVTTT 416


>gi|90418358|ref|ZP_01226270.1| putative RNA helicase, DEAD/DEAH box family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90338030|gb|EAS51681.1| putative RNA helicase, DEAD/DEAH box family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 455

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++   TK  A  L   L +  I  R +H       R + + + + G   VLV  +++
Sbjct: 248 EKTVIFTRTKHGANKLAADLEKAGIDARAIHGNKSQGARQKALGEFQTGTVSVLVATDIV 307

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAI 701
             G+ + +   V   D  +E       S +  IGR AR   S + +   D   +S    I
Sbjct: 308 ARGIHVDDISHVVNFDLPEE-----PESYVHRIGRTARAGKSGIAVALVDPSERSKLRQI 362

Query: 702 DE 703
           + 
Sbjct: 363 ER 364


>gi|38233613|ref|NP_939380.1| DEAD-box helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199873|emb|CAE49539.1| DEAD-box helicase [Corynebacterium diphtheriae]
          Length = 680

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++ V TK   E++ E L  R      ++ ++   +R   +  L+ G+ D+LV  ++ 
Sbjct: 307 EAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVA 366

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           S +  IGR  R   S   IL+     + +  +I
Sbjct: 367 ARGLDVERITHVFNYD-----IPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSI 421

Query: 702 DETTRRREKQLE 713
           +  T  +  +++
Sbjct: 422 ERATNAKLIEMD 433


>gi|330813838|ref|YP_004358077.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486933|gb|AEA81338.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 558

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 68/183 (37%), Gaps = 9/183 (4%)

Query: 517 EWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYD 573
           ++   +  T++ SAT  P    L +      E++ +         ++      + ED Y+
Sbjct: 170 KFLPKQKQTLMFSATIAPSIERLSKKYLNNAERVSVAAANATLITIKQEVINLRQEDKYN 229

Query: 574 EINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            +    +      L+ V TK  A+ L + L +       +H  ++  +R ++I   R  K
Sbjct: 230 TLVEQVKTKHGSTLVFVKTKHNAKKLAKNLEKEGFESDSLHGNLRQNKRNQVIAKFRANK 289

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             VLV  ++   GLDIP    V   D       +     I  +GR  R   S       T
Sbjct: 290 IHVLVATDIAARGLDIPHIEHVVNFD-----LPQQAEDFIHRMGRTGRAGASGTAWSFVT 344

Query: 693 ITK 695
            + 
Sbjct: 345 PSD 347


>gi|167761792|ref|ZP_02433919.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
           43183]
 gi|167700298|gb|EDS16877.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
           43183]
          Length = 372

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 81/257 (31%), Gaps = 51/257 (19%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L + + +   + +D     +                + + GF      D + L  +
Sbjct: 129 TPGRLLDLMNQ-GYIHLDNVRHFV----------LDEADRMLDMGFI----HDIKRLLPK 173

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP---PVEIRSARTQVEDVYD 573
                   T+  SAT            + + II  T  +      + I    + V+ +  
Sbjct: 174 L--PKEKQTLFFSAT------------MPDTIIALTNSLLKQPVKITITPKSSTVDTIEQ 219

Query: 574 EINLAAQQ--------------GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
            I    ++              G  +L+   TK  A+ +   L +  I  + +H      
Sbjct: 220 TIYFVEKKEKSKLLISILHKTEGQSVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQN 279

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            R   + + + GK  V++  ++   G+DI E  LV   D           + +  IGR  
Sbjct: 280 ARQSALENFKTGKIRVMIATDIAARGIDINELPLVINYD-----LPDVPETYVHRIGRTG 334

Query: 680 RNVNSKVILYADTITKS 696
           R  N    L   +  + 
Sbjct: 335 RAGNLGTALTFCSQEER 351


>gi|157377241|ref|YP_001475841.1| ATP-dependent RNA helicase RhlB [Shewanella sediminis HAW-EB3]
 gi|189040083|sp|A8G0U0|RHLB_SHESH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|157319615|gb|ABV38713.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 435

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 78/230 (33%), Gaps = 18/230 (7%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPG--SWEL 537
           +  I  +   +  R   L   GF      D R L     +      ++ SAT      EL
Sbjct: 156 VSAIQAVVLDEADRMFDL---GFI----KDIRFLFRRMPDAKSRLNMLFSATLSMKVQEL 208

Query: 538 EQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL--RILLTVLTKRM 594
                   E++ I P       ++       +++    +    ++    + ++   TK  
Sbjct: 209 AYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMDEKMRLLLTLLEEDWPDKAIVFSNTKHS 268

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            E L  +L     RV  +  +V   +RI I+     GK DVLV  ++   GL I +   V
Sbjct: 269 CEKLWSWLEGDGHRVGLLTGDVPQKKRIRILELFTEGKLDVLVATDVAARGLHISDVSHV 328

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
              D             +  IGR  R     V + +A         AI+E
Sbjct: 329 YNYD-----LPDDCEDYVHRIGRTGRAGKKGVSVSFACEEYALNLPAIEE 373


>gi|89902343|ref|YP_524814.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
 gi|89347080|gb|ABD71283.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 421

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 91/252 (36%), Gaps = 28/252 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         +D + +++  ++ +   +  R   L + GF   +   NR L   
Sbjct: 132 TPGRLLD--------LIDHNALSLSGVATLVLDEADR---LLDLGF---AEELNRILALL 177

Query: 517 EWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYD 573
                    +  SAT  P    L Q       +I + P     P +E R           
Sbjct: 178 PVQR---QNLFFSATFPPAVQTLAQVLLRDPVRIEVAPEPQTQPDIEQRVIEVDAAQRTQ 234

Query: 574 EINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +     Q    R+L+ V TK  AE + + L +  I     H E+   +R +++ D +  
Sbjct: 235 LLRHLMAQHHWSRVLVFVATKHAAEMVADKLRKARINAEPFHGELSQGKRTQVLADFKAS 294

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
           +  V+V  ++   GLDI +  +V   D       RS    I  IGR  R     V + + 
Sbjct: 295 RLKVVVATDVAARGLDIAQLPVVVNFD-----LPRSALDYIHRIGRTGRAGEKGVALSFV 349

Query: 691 DTITKSIQLAID 702
              T +    I+
Sbjct: 350 SAATDAHWRLIE 361


>gi|218780159|ref|YP_002431477.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761543|gb|ACL04009.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 489

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 81/242 (33%), Gaps = 23/242 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D     I +   +          L + GF      D R +  +  +  +  +++ SAT
Sbjct: 156 IIDYYKQGIFKTHAIKSVVIDEADRLLDLGF----AKDMRYILRKMPHYEKRQSMLFSAT 211

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR------TQVEDVYDEINLAAQQGL-R 584
                LE     +   +     +    V ++          Q + +   + +   +   R
Sbjct: 212 LSYRVLELTYDYMN--LPEFISVTPEEVTVKGIDQILYHVGQDQKLPLLLGVFKNEDWTR 269

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TK   E +   L         +  ++   +R++++   + G+  +LV  ++   
Sbjct: 270 ALVFVNTKSGVEFVAHKLRGNGFPAGGITGDLPQRKRLQLMERFKNGELSILVATDVASR 329

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-----VILYADTITKSIQL 699
           G+ + +   V   D       +   + +  IGR AR   +         +     + ++ 
Sbjct: 330 GIHVEDVSHVINYD-----LPQDPENYVHRIGRTARAGKTGKAISLACEHYVFHLEPMEE 384

Query: 700 AI 701
            I
Sbjct: 385 MI 386


>gi|46143724|ref|ZP_00134573.2| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208057|ref|YP_001053282.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae L20]
 gi|190149888|ref|YP_001968413.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303252206|ref|ZP_07338374.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|126096849|gb|ABN73677.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915019|gb|ACE61271.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648989|gb|EFL79177.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 619

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 72/198 (36%), Gaps = 28/198 (14%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TK    D+TE       R   ++ ++    R + +  L+ G+ D+LV  ++   
Sbjct: 248 AIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAAR 307

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR------NVNSKVILYADTITKSIQ 698
           G+DI    LV   D   +    S    I   GRA R       V  +       I   ++
Sbjct: 308 GIDIERISLVVNFDIPLD--AESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 365

Query: 699 LAIDET---------TRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
             IDE           +RREK         +H+       EK  E+++ +   D     +
Sbjct: 366 KPIDEVAIPNHEILMAKRREKFKARVSKQLEHHD-----LEKYRELLEDLFTADQDHEEL 420

Query: 747 SIDAQQLSLSKKKGKAHL 764
           +     + +  ++ +  +
Sbjct: 421 AA---AMMMMLQEKQKLI 435


>gi|251778643|ref|ZP_04821563.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082958|gb|EES48848.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 480

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 13/190 (6%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSAR---TQVEDVYDE 574
            +  T++ SAT        C   +   I   I+   L    V   +      Q  D  + 
Sbjct: 175 KKRVTLLFSATIPDEIKNLCDKHMNRPIDIAIKSQNLTSDNVSHYAYHVGYNQKLDSLNN 234

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I + ++     ++   TK   + + EYL ++      +H  +   +R++ +   R G F 
Sbjct: 235 ILI-SEMPETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFR 293

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           +LV  ++   G+DI     V   D   E     K + +  IGR  R     V + +    
Sbjct: 294 ILVATDIASRGIDIEGITHVINYDIPVE-----KEAYVHRIGRTGRAGAKGVALTFCKDS 348

Query: 694 TKSIQLAIDE 703
                  I+E
Sbjct: 349 GDRYLNEIEE 358


>gi|195147728|ref|XP_002014827.1| GL19380 [Drosophila persimilis]
 gi|194106780|gb|EDW28823.1| GL19380 [Drosophila persimilis]
          Length = 437

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 66/184 (35%), Gaps = 14/184 (7%)

Query: 520 CLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSARTQVEDVY 572
                T++ +AT  P    L +        +      +PT   +  V +     + + + 
Sbjct: 214 KKYRQTVMFTATMPPAVERLARSYLRRPSTVYIGSMGKPTERTEQIVYMMGENDKRKKLM 273

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           + ++        +++ V  K+ A+ L + L +       +H      +R   +  L+ G 
Sbjct: 274 EILSRKIDPP--VIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSGA 331

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            D+LV  ++   G+DI +  LV   D  K     S       IGR  R   +   +   T
Sbjct: 332 KDILVATDVAGRGIDIKDVSLVINYDMAK-----SIEDYTHRIGRTGRAGKTGCAISFVT 386

Query: 693 ITKS 696
              S
Sbjct: 387 KDDS 390


>gi|149180848|ref|ZP_01859350.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
 gi|148851367|gb|EDL65515.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
          Length = 496

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 78/252 (30%), Gaps = 36/252 (14%)

Query: 521 LRPTTIVVSATPGSWELE-----QCQGIIVEQIIRPTG----LVDPPVEIRSARTQVEDV 571
               T++ SAT    E++       +      + R  G    +    V +     Q   +
Sbjct: 175 KTRQTLLFSAT-IPDEIKTLAKKHMKSPEYISVERKQGPAKSVEQKAVFVNDRAKQ-ATL 232

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            + I     +    ++   TKR    L E L         +H ++   +R ++++  R  
Sbjct: 233 IEMIKEY--RPYLAVIFCRTKRRVTKLYEALASEGFMCDELHGDLSQAKREKVMKRFRDA 290

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILY 689
           +F +L+  ++   GLD+     V   D           S +  IGR  R       V  Y
Sbjct: 291 EFQLLIATDVAARGLDVEGITHVFNYD-----IPEDADSYVHRIGRTGRAGEKGLAVTFY 345

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
           +      +     E   R  KQ                 I  +ID    E       +  
Sbjct: 346 SPQQKDQLAEIEKELNIRLPKQ----------------NIGNIIDRDDTEKRKPKKAASR 389

Query: 750 AQQLSLSKKKGK 761
            +  S  KK  +
Sbjct: 390 KEHTSRDKKPRE 401


>gi|26334341|dbj|BAC30888.1| unnamed protein product [Mus musculus]
          Length = 669

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 39/256 (15%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 252 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 311

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 312 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 370

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 371 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICVCFYQ 425

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 426 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 472

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 473 AVDFFRPSAQRLIEEK 488


>gi|195131547|ref|XP_002010212.1| GI14822 [Drosophila mojavensis]
 gi|193908662|gb|EDW07529.1| GI14822 [Drosophila mojavensis]
          Length = 963

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 87/257 (33%), Gaps = 39/257 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++         E+  T  Q       D      + + GF         P   +
Sbjct: 368 TPGRLIDFL---------ENRNTNLQRCTYLVLDEA--DRMLDMGFE--------PQIRK 408

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEI---RS 563
               +RP    ++ SAT            + + I    G ++          VEI     
Sbjct: 409 IIEQIRPDRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICNENE 468

Query: 564 ARTQVEDVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
               +  +  EI   +  G   +I++ V TK   ED+ + +         +H +    ER
Sbjct: 469 KPQLLVRLLKEITSPSNNGGSNKIIIFVETKIKVEDILQIIRNEGYVATSIHGDKSQSER 528

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             +++D R GK ++L+  ++   GLD+ +   V   D     +  S  + +  IGR  R 
Sbjct: 529 DSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYD-----YPNSSENYVHRIGRTGRC 583

Query: 682 VNSKVILYADTITKSIQ 698
                     T   + Q
Sbjct: 584 QQLGTAYTFFTPDNAKQ 600


>gi|145628180|ref|ZP_01783981.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|145641923|ref|ZP_01797497.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|144979955|gb|EDJ89614.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|145273402|gb|EDK13274.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.4-21]
          Length = 173

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++   TK   E++  YL     RV  +  +V   +R+ +++    G  D+LV  ++ 
Sbjct: 14  ERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILVATDVA 73

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAI 701
             GL I +   V   D         +   +  IGR  R   S V I +A         AI
Sbjct: 74  ARGLHISDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAI 128

Query: 702 DE 703
           +E
Sbjct: 129 EE 130


>gi|116253340|ref|YP_769178.1| DEAD box ATP-dependent RNA helicase protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257988|emb|CAK09086.1| putative DEAD box ATP-dependent RNA helicase protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 576

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 66/190 (34%), Gaps = 12/190 (6%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVEDVYDEI 575
            +  T++ SAT      +     +V+ +   + P G     VE  +     + +      
Sbjct: 194 KKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVGGKNDKTELLR 253

Query: 576 NLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               +    R ++ + TK  AE L ++L      V  +H      +R   ++  R G   
Sbjct: 254 KSLTENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 313

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
            L+  ++   G+DIP    V   D           + +  IGR AR     + I +    
Sbjct: 314 TLIATDVAARGIDIPAVSHVYNYD-----LPEVPDAYVHRIGRTARAGRDGIAIAFCAPD 368

Query: 694 TKSIQLAIDE 703
              +   I+ 
Sbjct: 369 EAKLLRDIER 378


>gi|120609836|ref|YP_969514.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588300|gb|ABM31740.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 489

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 73/195 (37%), Gaps = 12/195 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVYDEINL--A 578
           T++ SAT            +      ++ RP       VE R      +D    I+    
Sbjct: 187 TLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETAST-VEQRFYSVNDDDKRRAIHHVLR 245

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +   +  + V +K     L+  L    ++   +H +    ER++ +   + G+ D+LV 
Sbjct: 246 TRGVKQAFVFVNSKLGCARLSRTLEREGLKAAALHGDKSQDERLKALDAFKRGEVDLLVC 305

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI +   V   D        +    +  IGR  R   S + +   + + +  
Sbjct: 306 TDVAARGLDIKDVPAVFNFDVPF-----NAEDYVHRIGRTGRAGASGLAVTLVSSSDARL 360

Query: 699 LAIDETTRRREKQLE 713
           +A  E   +++  LE
Sbjct: 361 VADIEKLTKKKIDLE 375


>gi|25027342|ref|NP_737396.1| putative ATP-dependent RNA helicase [Corynebacterium efficiens
           YS-314]
 gi|23492623|dbj|BAC17596.1| putative ATP-dependent RNA helicase [Corynebacterium efficiens
           YS-314]
          Length = 369

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 75/214 (35%), Gaps = 46/214 (21%)

Query: 496 TLAEYGFRLPSCMD-NRPLRFEEWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTG 553
            + + GF LP      R L        +  T++ SAT PG              +     
Sbjct: 112 EMLDLGF-LPDIEKIMRALT------HKHQTMLFSATMPGP------------ILTLARS 152

Query: 554 LVDPPVEIRS----------ARTQV---------EDVYDEINLAAQQGLRILLTVLTKRM 594
            +D PV IR+             Q+         E V   I  A  +G + ++   TKR 
Sbjct: 153 FLDKPVHIRAESADSAATHATTRQIVFQAHRMDKEAVTARILQARGRG-KTIIFARTKRT 211

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A  + E L  R   V  +H ++    R   +   R GK D+LV  ++   G+DI +   V
Sbjct: 212 AAQVAEDLAARGFTVGSVHGDMGQPARERSLNAFRSGKIDILVATDVAARGIDIDDVTHV 271

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
                          + +  IGR  R  ++   +
Sbjct: 272 INYQT-----PDDPMTYVHRIGRTGRAGHTGTAV 300


>gi|109899589|ref|YP_662844.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas atlantica T6c]
 gi|109701870|gb|ABG41790.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 412

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 89/292 (30%), Gaps = 40/292 (13%)

Query: 463 EYIPEDSLLFVDESHVTIPQIS--GMYRGDFH-----RKATLAEYGFRLPSCMDNRPLRF 515
           +   ++  + V         I        D           + + GF   S + N+    
Sbjct: 117 DTFEKNLDILVATPGRLFEHIEQESFDCRDIECLILDEADRMLDMGF---SSIVNQISAE 173

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             W   R  +++ SAT     LE        + I    +       R  + ++       
Sbjct: 174 ARW---RKQSMLFSAT-----LEGTGISRFAKDILNDPVELEAASSRKEQGKIHQWLHIA 225

Query: 576 NLAAQQ-----------GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           + A  +               ++ V T+    +L + L      V ++  E+   +R   
Sbjct: 226 DDAKHKYALLKHILTHQVESAVVFVKTRDRLNELKQILERDGFTVCWLQGEMPQDKRNLS 285

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +   R G+  +L+  ++   G+D+     V   D  +     +    +  IGR  R  N 
Sbjct: 286 MAKFRSGEVKILIATDVAARGIDVESISHVINYDMPR-----TADVYVHRIGRTGRAGNK 340

Query: 685 KVIL-----YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIME 731
              +     +   I   I+   ++  +RR       K     P   K KI  
Sbjct: 341 GTAISLVEAHDIGIVPKIERYTEQPLKRRVIDELRPKNKEAKP-PAKRKISN 391


>gi|321261169|ref|XP_003195304.1| hypothetical protein CGB_G4440W [Cryptococcus gattii WM276]
 gi|317461777|gb|ADV23517.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
          Length = 615

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 17/217 (7%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
                 + + GF      D R +           T++ SAT      +  Q  ++  I+ 
Sbjct: 343 MDEADRMIDMGFE----EDVRSIMSHFKYQR--QTLLFSATMPRKIQDFAQQSLINPILV 396

Query: 551 PTGL-----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
             G      +D   E+   + Q   +   +    +    +++    K   +D+ EYL  +
Sbjct: 397 NVGRAGAANMDVIQEVEYVK-QEAKMVYLLECLQKTPPPVIIFSDNKNEVDDIQEYLLLK 455

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +    +H      ER   IR  + G  DV+V   +  +GLD  E   V +    KE   
Sbjct: 456 GVEAVAIHGSKTQEEREYAIRSFKTGAKDVMVASGVASKGLDFNEIQHVIVYSMPKE--- 512

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
                 +  IGR  R+  + +      +  S Q  +D
Sbjct: 513 --IEDYVHEIGRTGRSGKTGLATTFVNMNTSEQTLLD 547


>gi|229014620|ref|ZP_04171734.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides DSM 2048]
 gi|228746631|gb|EEL96520.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides DSM 2048]
          Length = 464

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 70/185 (37%), Gaps = 11/185 (5%)

Query: 525 TIVVSAT-PGSWE-LEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINL--AA 579
           T++ SAT P   E L +        I I+ TG+    +E      + E+    +      
Sbjct: 180 TMLFSATLPKDVEKLSRTYMDSPTHIEIKATGITTDKIEHILFEMREEEKLSLLKDVTTI 239

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +     ++   T+   + + + L   N     +H  +   +R E++ D R GKF  LV  
Sbjct: 240 ENPDSCIIFCRTQENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQ 698
           ++   G+DI     V   D   E     K S +   GR  R  N+ K I +         
Sbjct: 300 DVAARGIDIDNITHVINYDIPLE-----KESYVHRTGRTGRAGNNGKAITFMTPYENRFL 354

Query: 699 LAIDE 703
             I+E
Sbjct: 355 EEIEE 359


>gi|77457664|ref|YP_347169.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77381667|gb|ABA73180.1| ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 446

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 101/301 (33%), Gaps = 34/301 (11%)

Query: 471 LFVDESHVTIPQISGMYRGDFH-------RKATLAEYGFRLPSCMDNRPLRFEEWNCLRP 523
           + +      I Q++                   + + GF      D + L  E  N  R 
Sbjct: 124 ILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGF----AEDVQRLVDECPN--RQ 177

Query: 524 TTIVVSATPG--------SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT G        +  L   + + +  + +        +         E + + +
Sbjct: 178 QTMLFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQHKEQIVNWL 237

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A +   + ++   T+ MA+ +   L  +  +   +H E    +R   I  L+ G   +
Sbjct: 238 L-ANETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYAD 691
           LV  ++   GLD+    LV   D  + G        +  IGR  R  N      +I + D
Sbjct: 297 LVATDVAARGLDVDGLDLVINFDMPRSG-----DEYVHRIGRTGRAGNDGLAISLICHGD 351

Query: 692 T-ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
             +  SI+  + ++  RR  +          P+ VK     V       DA        A
Sbjct: 352 WNLMSSIERYLKQSFERRTIKEVKGTYGG--PKKVKASGKAVGVKKKKTDAKGDKKKTAA 409

Query: 751 Q 751
           +
Sbjct: 410 K 410


>gi|322707397|gb|EFY98975.1| DEAD/DEAH box helicase [Metarhizium anisopliae ARSEF 23]
          Length = 651

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 6/140 (4%)

Query: 566 TQVEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
            +V D+  +   A     +  L+  +       L     E     R++  +    ER EI
Sbjct: 266 NEVNDITVKSWTAKAGDRKSTLVFCVDLAHVSGLARKFREYGYDARFVTGDTPKQERSEI 325

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + D + G F VLV   +  EG DIP    + +    +     S+  L+Q IGR  R    
Sbjct: 326 LHDFKKGCFPVLVNCGVFTEGTDIPNIDCIVLGRPTR-----SRNLLVQMIGRGMRLHPG 380

Query: 685 KVILYADTITKSIQLAIDET 704
           K   +   +  S++  I  T
Sbjct: 381 KKNCHVIDLVSSLETGIVTT 400



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 14/133 (10%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR------PAIVMAPNKILA 206
           Q   I  +L  +    K   +   TGSGKT    ++I+ +          +++A  + L 
Sbjct: 45  QQECIKSVLLSLRRGHKRVGISLATGSGKTVIFTQLIDKVHSRSDGGDRTLILAHRRELV 104

Query: 207 AQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI--NEQIDRMRHSATR 264
            Q     +  +P   +E  +               D  I    SI   +++++   S  +
Sbjct: 105 EQAARHCQLAYPDKTIEIEMGSIHASG------AADITIASVQSITSRDRLEKFEPSEFK 158

Query: 265 SLLERNDCIVVSS 277
            +L      +V+ 
Sbjct: 159 LVLVDEAHHIVAP 171


>gi|217072018|gb|ACJ84369.1| unknown [Medicago truncatula]
          Length = 242

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 82/211 (38%), Gaps = 25/211 (11%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 33  YDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE 92

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T+R  + LT+ +  R+  V   H ++    R  I
Sbjct: 93  EWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 150

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 151 MREFRSGSSRVLITTDLLARGIDVQQVFLVINFD-----LPTQPENYLHRIGRSGRFGRK 205

Query: 685 KVILYADTITKSIQLAIDETTRRREKQLEHN 715
            V +   T      L        R+ Q  +N
Sbjct: 206 GVAINFVTKEDEGML--------RDIQKFYN 228


>gi|163751726|ref|ZP_02158944.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
 gi|161328378|gb|EDP99537.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
          Length = 453

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 21/243 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE------INL 577
             ++ SAT      E  +  I   I      V    E +    Q     D+      ++ 
Sbjct: 185 QNLLFSATLSRQVRELAKETIPNAI---QLSVTKKSEGKPNIDQWLVTVDKDKKSALLSH 241

Query: 578 AAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             ++    + L+ + TK  A  L   L +R I+   +HS      R +I+ D + GK   
Sbjct: 242 LIKENRWQQALIFIETKHGAAKLVTQLEKRGIQAECIHSGRAQAIREQILADFKSGKIQF 301

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+   +   G+DI E  LV   D             +  IGR AR   +   +   +   
Sbjct: 302 LISTGISARGIDIDELPLVINYD-----LPYPADEYVHRIGRTARAGAAGEAISLVSKDD 356

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
              L + E  +R +  +E        P+   +++   +   + ++    + S D++    
Sbjct: 357 FKNLCMIE--KRLDHLIERKVVAGFEPR---KEVPVSVLNFVPKNKPARDDSKDSRPKPK 411

Query: 756 SKK 758
            K+
Sbjct: 412 DKR 414


>gi|71005634|ref|XP_757483.1| hypothetical protein UM01336.1 [Ustilago maydis 521]
 gi|74703797|sp|Q4PEX7|DBP8_USTMA RecName: Full=ATP-dependent RNA helicase DBP8
 gi|46096966|gb|EAK82199.1| hypothetical protein UM01336.1 [Ustilago maydis 521]
          Length = 602

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 76/194 (39%), Gaps = 15/194 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++     + A  L+  L E  I    +HS ++  ER E ++  R  +  VL+  ++   
Sbjct: 414 TIIFTARCKTAATLSGMLAELGIPNVSLHSHLRQSERSENLQTFRAQRVPVLIATDVGSR 473

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLDIP+  LV   D        +    +  +GR ARN      I +       +  +I++
Sbjct: 474 GLDIPDVELVINWD-----LPSAWQDYVHRVGRTARNGKRGFAISFITERDIDVIHSIED 528

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
               +  QLE      +  +   +KI+E ++ +       T    D+Q     ++     
Sbjct: 529 KINTKLTQLE-----GLEDE---DKILEKLNAVATAKRVATMALHDSQFGERQQRNQHKQ 580

Query: 764 LKSLRKQMHLAADN 777
           L  L+ +   A+  
Sbjct: 581 LARLKAE-KRASKK 593


>gi|329115610|ref|ZP_08244332.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
 gi|326695038|gb|EGE46757.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
          Length = 400

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 59/303 (19%), Positives = 103/303 (33%), Gaps = 33/303 (10%)

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP-GEPPPT 460
           EL +++ ++ +   L E+++ +++    L  L         E++    TGR      P  
Sbjct: 82  ELVLQVEKVFRT-CLEESKKGQKQTAVTLVPLFGGSDRAEQEHFLAQATGRRILIATPGR 140

Query: 461 LFEY-------IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
           L ++       + E   L +DE                    TL  Y   LPS      L
Sbjct: 141 LLDFVSNRICDLSECGYLVLDEGDRL------FSPEFQEDTETLLSY---LPSMRQTLVL 191

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
              +   L+ T + +   P    +EQ         IR   L   P       +Q      
Sbjct: 192 SATQPESLKSTLLNLLHKPVEISIEQAPQ--KRGPIRQAALFLDP-------SQKPGFIK 242

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E    A + +R ++ V TK  A+ L   L +  +    +H ++   +R   +     G+ 
Sbjct: 243 EFFSRAPK-MRSIIFVRTKAEADQLAAILKKARLAAAPLHGDIAQDKRTSTVASFESGRL 301

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLD+P    V   D           + +  IGR  R       L   T+
Sbjct: 302 FILVATDVAARGLDVPSVKQVINYDV-----PDQPETYLHRIGRTGRGGEKGSALTLCTM 356

Query: 694 TKS 696
              
Sbjct: 357 DDR 359


>gi|289342912|ref|NP_001166066.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Bos taurus]
 gi|284794217|gb|ADB93367.1| DEAD box polypeptide 3 Y-linked short isoform [Bos taurus]
 gi|296470425|gb|DAA12540.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Bos taurus]
          Length = 660

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +LV   +   
Sbjct: 444 TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 503

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           GLDI     V   D             +  IGR  R  N  
Sbjct: 504 GLDISNVKHVINFD-----LPGDIEEYVHRIGRTGRVGNLG 539


>gi|284794215|gb|ADB93366.1| DEAD box polypeptide 3 Y-linked long isoform [Bos taurus]
          Length = 661

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +LV   +   
Sbjct: 444 TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 503

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           GLDI     V   D             +  IGR  R  N  
Sbjct: 504 GLDISNVKHVINFD-----LPGDIEEYVHRIGRTGRVGNLG 539


>gi|315499118|ref|YP_004087922.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB
           48]
 gi|315417130|gb|ADU13771.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
           48]
          Length = 605

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 78/247 (31%), Gaps = 25/247 (10%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLR 522
            +D        +  +          + + GF         RLP+   N       ++   
Sbjct: 136 LIDHIEQKTIDLKAVEHLVLDEADQMLDMGFIKPIRQVASRLPAQRQNL-----FFSATM 190

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
           P  I   A       ++     VE     T       ++     Q +        A ++ 
Sbjct: 191 PKEIAGLANELLTNPKK-----VEITPEATTAERVTQQVIFIEQQRKRALLSELYADEKL 245

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R L+   TKR A+ +  YL    +    +H +    +R   ++  + G+   LV  ++ 
Sbjct: 246 ARTLIFTRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRVRALVATDIA 305

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAI 701
             G+D+     V   +           + +  IGR AR       I       + +   I
Sbjct: 306 ARGIDVDNVTHVINYELPFV-----AEAYVHRIGRTARAGKEGHSITLVADDERKLLKDI 360

Query: 702 DETTRRR 708
           +  TR+R
Sbjct: 361 ERITRQR 367


>gi|256821642|ref|YP_003145605.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795181|gb|ACV25837.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 598

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 67/187 (35%), Gaps = 22/187 (11%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK    +L + L  R  R   ++ ++    R  I+  L+ G+ D+L+  ++   
Sbjct: 250 MIIFVRTKIATTELADKLTARGFRAEALNGDIAQTTRERIVEKLKKGQIDILIATDVAAR 309

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     + +  AI+ 
Sbjct: 310 GLDVERISHVVNYD-----IPYDTESYVHRIGRTGRAGRSGNAILFVAHRERRMLKAIER 364

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
                              Q + E  M  ID I  +  +     + +   +      K  
Sbjct: 365 A----------------TNQPITEMQMPSIDNINEQRMSRFERKVLSTIENDDLSFFKQF 408

Query: 764 LKSLRKQ 770
           +  L ++
Sbjct: 409 ITKLEEK 415


>gi|146284249|ref|YP_001174402.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri A1501]
 gi|145572454|gb|ABP81560.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri
           A1501]
 gi|327482632|gb|AEA85942.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM 4166]
          Length = 609

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 70/193 (36%), Gaps = 11/193 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIV--EQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +   ++ SAT      +    ++   E+I + P       +E R  R         +   
Sbjct: 184 KRQNLLFSATFSKDITDLAAKLLQNPERIEVTPPNTTVERIEQRVFRVASSHKRALLAHL 243

Query: 579 AQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             QG   ++L+   TK  A  L EYL +  +    +H       R + + D +  +  +L
Sbjct: 244 ITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQVRIL 303

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI +   V   +         +   +  IGR  R   S   I       +
Sbjct: 304 VATDIAARGLDIDQLPHVVNFE-----LPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEE 358

Query: 696 SIQLAIDETTRRR 708
            +   I+  T++R
Sbjct: 359 KLLKGIERMTKQR 371


>gi|58268018|ref|XP_571165.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|74685312|sp|Q5KHB7|DBP3_CRYNE RecName: Full=ATP-dependent RNA helicase DBP3
 gi|57227399|gb|AAW43858.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 605

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 86/227 (37%), Gaps = 32/227 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT     + +     +   +R T   D      SA  ++E + + ++    +  
Sbjct: 365 QTVMFSAT-WPESVRRLASTFLNNPLRITVGSDEL----SANKRIEQIVEVLDNPRDKDF 419

Query: 584 R---------------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           R                     IL+  L K+ A+ L   +      V  +H ++    R 
Sbjct: 420 RLTHHLKAHLKVHPNSKTSPTRILVFALYKKEAQRLEYTIRRAGYAVGALHGDMTQEARF 479

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           + +   + G+ +VLV  ++   GLDIP+ GLV  +      F  +    +   GR  R  
Sbjct: 480 KALEAFKTGQQNVLVATDVAARGLDIPDVGLVINV-----TFPLTTEDFVHRCGRTGRAG 534

Query: 683 NS-KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            + K + +         LA +     R+   E  K+ +  P ++K+K
Sbjct: 535 KTGKAVTFFTGENHEKSLAGEFMRVLRDVGAEIPKEMDRFPTTIKKK 581


>gi|32477297|ref|NP_870291.1| ATP-dependent RNA helicase rhlE [Rhodopirellula baltica SH 1]
 gi|32447848|emb|CAD77366.1| putative ATP-dependent RNA helicase rhlE [Rhodopirellula baltica SH
           1]
          Length = 485

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 78/225 (34%), Gaps = 24/225 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGL 554
            + + GF LP     R L+F          ++ SAT PG    +    I+V+ +      
Sbjct: 171 HMLDMGF-LPDVK--RILKFLP---RDRQNLLFSATMPGP-IRKLADEILVDPVTIQIAP 223

Query: 555 VDPPVEIRSART-----QVED--VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
             P VE R  ++     Q +   + +        G   L+   TK  A+ +   L +  +
Sbjct: 224 QKPTVE-RIEQSICFVAQADKPRLLNHFIETKATG-STLVFTRTKHGADAVARRLVKAGV 281

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +   +H       R+  +   +  + DVLV  ++   G+DI     V   D        +
Sbjct: 282 KAAAIHGNKTQANRVRTLNKFKNDELDVLVATDVAARGIDIDGIQTVINYDT-----PNT 336

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
             + +  IGR  R       +         +  I    R  + Q+
Sbjct: 337 PEAYVHRIGRTGRAGREGETVMFCG-GHETKFFIA-IEREIKLQI 379


>gi|308051267|ref|YP_003914833.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307633457|gb|ADN77759.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 427

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 82/244 (33%), Gaps = 27/244 (11%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLR 522
            +D       +++G+          + + GF         R+P+  + R + F      +
Sbjct: 145 LIDYYKQGTYKLNGIQVMVLDEADRMFDLGFIKDIRYLFRRMPAPAERRNMLFSATLSFK 204

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
              +       ++E       +  +  + TG          +    +D    +    ++ 
Sbjct: 205 VQEL-------AYEHMNEPEHVQVEPEQKTGKRIKEELFYPSN---DDKMRLLLTLIEED 254

Query: 583 L--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
              + ++   TK   ED+  ++     RV  +  +V   +R++I+   + G+ D LV  +
Sbjct: 255 WPDKAIIFANTKHRCEDIWAWMAGDGHRVGLLTGDVPQKKRVKILEQFKAGEVDFLVATD 314

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQL 699
           +   GL I +   V   D             +  IGR  R       I +A         
Sbjct: 315 VAARGLHIADVTHVFNYD-----LPDDAEDYVHRIGRTGRAGATGHSISFACEQYALNLP 369

Query: 700 AIDE 703
           AI+E
Sbjct: 370 AIEE 373


>gi|302920275|ref|XP_003053036.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256733976|gb|EEU47323.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 621

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 66/174 (37%), Gaps = 19/174 (10%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            G+R ++ V +++ A++L ++LY   + V  +HS+    ER   +R  R G   +L+   
Sbjct: 384 HGVRTIIFVNSRQAADNLDDFLYNMKLPVTSIHSDRTQQEREAAMRSFRSGNAPILIATG 443

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKSIQL 699
           +   G+D+     V   D                IGR  R  +  +   +     + +  
Sbjct: 444 VSARGIDVRNVVHVINYDLPSMDHG-GIEEYTHRIGRTGRIGHRGIATSFFTERDEGMGS 502

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
            +  T       LE N++           I + +   + E  A TN+  +A   
Sbjct: 503 VLTRTL------LETNQE-----------IPDCLQMYVPEGEARTNLKFEADSD 539


>gi|229065102|ref|ZP_04200395.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH603]
 gi|228716131|gb|EEL67850.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH603]
          Length = 481

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 70/185 (37%), Gaps = 11/185 (5%)

Query: 525 TIVVSAT-PGSWE-LEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINL--AA 579
           T++ SAT P   E L +        I I+ TG+    +E      + E+    +      
Sbjct: 180 TMLFSATLPKDVEKLSRTYMDSPTHIEIKATGITTDKIEHTLFEMREEEKLSLLKDITTI 239

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +     ++   T+   + + + L   N     +H  +   +R E++ D R GKF  LV  
Sbjct: 240 ENPDSCIIFCRTQENVDHVFQQLKRINYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQ 698
           ++   G+DI     V   D   E     K S +   GR  R  N+ K I +         
Sbjct: 300 DVAARGIDIDNITHVINYDIPLE-----KESYVHRTGRTGRAGNNGKAITFMTPYENRFL 354

Query: 699 LAIDE 703
             I+E
Sbjct: 355 EEIEE 359


>gi|150864695|ref|XP_001383630.2| nucleolar DEAD-box protein required for synthesis of 60S ribosomal
           subunits [Scheffersomyces stipitis CBS 6054]
 gi|149385951|gb|ABN65601.2| nucleolar DEAD-box protein required for synthesis of 60S ribosomal
           subunits [Scheffersomyces stipitis CBS 6054]
          Length = 672

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 96/269 (35%), Gaps = 30/269 (11%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRP-----TGLVDPPVEIRSARTQVEDVYD 573
           +  T++ SAT        ++      V  +I P     T L    V IR        +  
Sbjct: 338 KRQTLLFSATMNTKIQDLIQLSLQRPVRIMIDPPKTAATKLTQEFVRIRKRDHLKPALLF 397

Query: 574 EINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           ++       Q  RI++ V  K  A  L   L    ++V  +H  +   +R+  + D +  
Sbjct: 398 QLLKKLDPAQQSRIVVFVSRKESAHKLRIVLGLLGMKVSELHGSLTQEQRLNNVNDFKKL 457

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
              VL+  +L   GLDIP+  +V   D  K     S    +  +GR AR           
Sbjct: 458 IVPVLICTDLAARGLDIPKIEIVINYDMPK-----SHEVYLHRVGRTARAGRDGT----- 507

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED-AATTNISIDA 750
               SI    + T+ R   +           +   + +   ID + +E          + 
Sbjct: 508 ----SISFVGESTSDRNIVKDAIKSLEGGEVKG--KAVSRNIDWVDVEQLNKIVESKQEI 561

Query: 751 QQLSLSKKKGKAHLKSLRKQMHLA-ADNL 778
            +  L ++K    +  L+ +M LA A N+
Sbjct: 562 IEEVLDEEKQAKEI--LQAEMQLAKASNM 588


>gi|3435312|gb|AAC32396.1| RNA helicase-related protein [Homo sapiens]
          Length = 709

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 314 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 373

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 374 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 432

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 433 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 487

Query: 696 S 696
           S
Sbjct: 488 S 488


>gi|70733086|ref|YP_262859.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5]
 gi|68347385|gb|AAY94991.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           fluorescens Pf-5]
          Length = 622

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 11/193 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGII--VEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +   ++ SAT      +    ++   E+I + P       +E R  R         +   
Sbjct: 184 KRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLAHL 243

Query: 579 AQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              G   ++L+   TK  A  L EYL +  +    +H       R + + D + G+  +L
Sbjct: 244 ITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEVRIL 303

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI +   V   +             +  IGR  R   S   I       +
Sbjct: 304 VATDIAARGLDIDQLPHVVNFE-----LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEE 358

Query: 696 SIQLAIDETTRRR 708
            +  +I+  T+++
Sbjct: 359 KLLKSIERMTKQK 371


>gi|326499824|dbj|BAJ90747.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 518

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT             P  + +     + ++ I +    V+   ++         
Sbjct: 319 QILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKVH-------- 370

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   +    E L + + E      Y+H+++    R  +  D R 
Sbjct: 371 CLNTLFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 429

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F +S  + +  +GR+ R  +  + +  
Sbjct: 430 GACRNLVCTDLFTRGIDIQAVNVVINFD-----FPKSSETYLHRVGRSGRFGHLGLAVNL 484

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            T      L        R +Q    +   I PQ
Sbjct: 485 ITYEDRFNL-------YRIEQELGTEIKPIPPQ 510


>gi|260774607|ref|ZP_05883519.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260610401|gb|EEX35608.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 408

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 77/193 (39%), Gaps = 13/193 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVYDEINL 577
           +  T++ SAT    ELE+     +   I+    P     P +E +            +  
Sbjct: 173 KKQTLLFSATLLP-ELEEKALQPLNDPIKISANPPNQTVPEIEEQLYLVNKGSKAQVLIH 231

Query: 578 AAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             +Q    ++L+ +  +  A+ L + L +  IRV  +H      ER +I+   +  K +V
Sbjct: 232 LLKQHHWSQVLVFISARDNADALAKKLLKAGIRVAALHGNKDQTEREQILTQFKQQKIEV 291

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           L+  +LL  G+ I +  +V   D        S    I  +GR AR   +   +       
Sbjct: 292 LIATDLLARGIHIEQLPVVINFD-----LPPSPAVYIHRVGRTARAGQTGLALSLVCHNE 346

Query: 695 KSIQLAIDETTRR 707
            +I  AI + T+R
Sbjct: 347 NAILDAIRQLTQR 359


>gi|302535427|ref|ZP_07287769.1| DEAD-box RNA helicase [Streptomyces sp. C]
 gi|302444322|gb|EFL16138.1| DEAD-box RNA helicase [Streptomyces sp. C]
          Length = 508

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 17/157 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D        A +  R+++ + TK   + LT+ L    +R   +H      +R   +   +
Sbjct: 303 DKQRTTTEIAAREGRVMMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLAQFK 362

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ +    LV  +D             +   GR AR   S  ++ 
Sbjct: 363 TGHVTVLVATNVAARGIHVDSLDLVVNVDP-----PTDPKDYLHRGGRTARAGESGSVVT 417

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
             T  +  ++        R  Q        I PQ+ +
Sbjct: 418 LVTPNQRREMT-------RLMQAA-----GITPQTTQ 442


>gi|156096943|ref|XP_001614505.1| ATP-dependent RNA helicase [Plasmodium vivax SaI-1]
 gi|148803379|gb|EDL44778.1| ATP-dependent RNA helicase, putative [Plasmodium vivax]
          Length = 433

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 18/213 (8%)

Query: 517 EWNCLRPTTIVVSAT-PG------SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           ++       ++ SAT P          L     I +   +   G+      ++    Q  
Sbjct: 228 KFLPKEKQILMYSATFPVTVKEFRQIYLSDAHEINLMDELTLKGITQYYAFVK--ERQKV 285

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
              + +    Q     ++   +    E L + + E      Y+H+ +    R  +  D R
Sbjct: 286 HCLNTLFAKLQINQ-AIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFR 344

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G    LV  +L   G+DI    +V   D     F ++  + +  IGR+ R  +  + + 
Sbjct: 345 NGACRCLVSSDLFTRGIDIQSVNVVINFD-----FPKNSETYLHRIGRSGRYGHLGLAIN 399

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
             T      L   E     E Q      + I+P
Sbjct: 400 LITYEDRFNLYKIELELGTEIQ---PIPNEIDP 429


>gi|66800751|ref|XP_629301.1| hypothetical protein DDB_G0293064 [Dictyostelium discoideum AX4]
 gi|60462682|gb|EAL60884.1| hypothetical protein DDB_G0293064 [Dictyostelium discoideum AX4]
          Length = 573

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 18/203 (8%)

Query: 518 WNCLRP--TTIVVSAT-P---GSWELEQCQGIIVEQIIRPTGLVDPPV----EIRSAR-T 566
           +N +RP    +  SAT P    S+  +  +  I  QI       +  +    +I      
Sbjct: 311 FNSIRPDRQVLYWSATWPKKVSSFAEKHIRTPIRLQIGSSQLTANKNISQKFKIVPTDAD 370

Query: 567 QVEDVYDEI--NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERI 622
           +V+ + D +    +A +  + L+  +TK+ A+ L  Y+      VR   +H +V    R 
Sbjct: 371 KVDALMDTLGEIYSADEKAQTLIFTMTKKGADTLKHYIQSNGDNVRIDTLHGDVDQNRRE 430

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
            I++D +  + D++V  ++   GLDI     V       +    +    I   GRA    
Sbjct: 431 RIVQDFKNKRLDIVVATDVASRGLDIKGISHVINFSLPSD--CETYVHRIGRTGRAGALG 488

Query: 683 NSKVILYADTITKSIQLAIDETT 705
            S  IL  +++   ++L  D T 
Sbjct: 489 TSHSILSNNSLDD-MELVGDLTN 510


>gi|319405816|emb|CBI79446.1| ATP-dependent RNA helicase [Bartonella sp. AR 15-3]
          Length = 465

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 67/193 (34%), Gaps = 15/193 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVE--IRSARTQVED---VYDE 574
            T+  SAT      +  +  +      +I + +       +  ++S     +    + + 
Sbjct: 184 QTLFFSATMAPEITKLTKQFLHSPVYIEITKASSTAKKITQRLVKSGSKPWDKRAILREL 243

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I+    +    ++    K+   +L   L + N  V  +H ++    R   + + +  K  
Sbjct: 244 IHKEGDELKNAIIFCNRKKDISELVRSLIKHNFSVGTLHGDMDQHSRTSTLANFKDNKLT 303

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTI 693
           +LV  ++   GLDIP    V   D             I  IGR  R   S K        
Sbjct: 304 LLVASDVASRGLDIPAVSHVFNYDV-----PTHAEDYIHRIGRTGRAKRSGKAFTIVTKA 358

Query: 694 TKSIQLAIDETTR 706
            +    AI+E ++
Sbjct: 359 DEKYISAIEEISQ 371


>gi|307261010|ref|ZP_07542692.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869312|gb|EFN01107.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 406

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   E++  YL     RV  +  ++   +R+ ++     G+ D+LV  ++  
Sbjct: 255 RCMIFANTKHKCEEIWGYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLDILVATDVAA 314

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAID 702
            GL IPE   V   D             I  IGR  R   S   I +A         AI+
Sbjct: 315 RGLHIPEVTHVFNYD-----LPDDCEDYIHRIGRTGRAGESGHSISFACERYAVNLPAIE 369


>gi|218262439|ref|ZP_03476905.1| hypothetical protein PRABACTJOHN_02583 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223369|gb|EEC96019.1| hypothetical protein PRABACTJOHN_02583 [Parabacteroides johnsonii
           DSM 18315]
          Length = 436

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 7/141 (4%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
             + ++E +Y  +     +G   L+    +   E +++YL E  +   Y H  ++  ER 
Sbjct: 212 PVKDKLETLYKLLGEL--KGGSALIFCNYRETVERVSDYLTEMGVDNEYFHGGMEQPERE 269

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             +   R G   V +  +L   GLDIPE   V            S+ + +   GR AR  
Sbjct: 270 RALSHFRNGSATVFISTDLASRGLDIPEVKNVI-----HYHLPVSEEAYVHRNGRTARMN 324

Query: 683 NSKVILYADTITKSIQLAIDE 703
              V        +++   I  
Sbjct: 325 AEGVAYLILNAEETVPEYITR 345


>gi|170719671|ref|YP_001747359.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169757674|gb|ACA70990.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 630

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 57/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +        R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D +     VLV  ++   GLDI +   V   +    
Sbjct: 270 EKHGLSAAAIHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                +   +  IGR  R   S   I       + +  +I+  TR++
Sbjct: 326 -LPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERVTRQK 371


>gi|308813391|ref|XP_003084002.1| putative RNA helicase, DRH1 (ISS) [Ostreococcus tauri]
 gi|116055884|emb|CAL57969.1| putative RNA helicase, DRH1 (ISS) [Ostreococcus tauri]
          Length = 1118

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 8/139 (5%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR-VRYMHSEVKTLERIEII 625
           + +     +     +    ++   TKR  + L   L +        +H +    ER  ++
Sbjct: 337 KFDRCVAILKKELGKNETCIMFAGTKRRCDFLDRRLKQVGFSSAGSIHGDKDQYEREMVL 396

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            + R G+ ++LV  ++   GLDIP    V + D     F       +  IGR  R     
Sbjct: 397 DNFRRGRGNILVATDVAARGLDIPGVAAVIVYD-----FPLQVEDYVHRIGRTGRAGKDG 451

Query: 686 --VILYADTITKSIQLAID 702
                +      +    I+
Sbjct: 452 KAFTFFTKDNRGAANELIE 470


>gi|261278544|pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
          Length = 187

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L      V  +H +++T ER  +I D R G+  VL+  N+L  G
Sbjct: 39  IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 98

Query: 646 LDIPECGLVAILDADKEGFLRSKTS-LIQTIGRAARNVNSKVI--LYADTITKSIQLAI 701
           +DIP   +V   D       ++  +  I  IGR  R     V      D  + +I  AI
Sbjct: 99  IDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAI 157


>gi|255326979|ref|ZP_05368055.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
 gi|255296196|gb|EET75537.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
          Length = 565

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +++   I  A  +G R ++   TKR A  + E L  R      +H ++  + R + ++  
Sbjct: 253 DEMIGRILRATGRG-RTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAF 311

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           R GK D+LV  ++   G+D+ +   V             + + +   GR  R  N    +
Sbjct: 312 RTGKVDILVATDVAARGIDVEDVTHVINHRV-----PEDEKTYLHRTGRTGRAGNEGTAV 366

Query: 688 LYADTITKSIQLAID 702
              D         I+
Sbjct: 367 TLVDWDDLPRWKVIN 381


>gi|153874150|ref|ZP_02002476.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS]
 gi|152069386|gb|EDN67524.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS]
          Length = 441

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 71/211 (33%), Gaps = 26/211 (12%)

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
           +   +      T++ SAT      +     +  ++++    +    ++   +  +E    
Sbjct: 173 KIASFTPETRQTLLFSAT-----WDNTMASLARRLLKDPERIQVESQV--TQNNIEQRLH 225

Query: 574 EINLAAQQGL------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
             +    +              + ++   TK+ A DL + L  +      +H ++K   R
Sbjct: 226 IADDFKHKNRLLLHVLDNEELTQAIIFSATKQGANDLAQELKAQGHSAAALHGDMKQGAR 285

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
              + +LR GK  +LV  ++   G+D+     V   D  +          +  IGR  R 
Sbjct: 286 NRTLMNLRRGKLRLLVATDVAARGIDVTTVTHVINFDLPRF-----AEDYVHRIGRTGRA 340

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQL 712
             +   +       +  LA     R    Q+
Sbjct: 341 GAAGTAISFALPDDARHLA--RIERYTGIQV 369


>gi|56477991|ref|YP_159580.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
 gi|56314034|emb|CAI08679.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
          Length = 491

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 83/258 (32%), Gaps = 18/258 (6%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D       Q+  +          + + GF  P       L           +++ SAT
Sbjct: 138 LLDHVQQKTIQLGQVEMLVLDEADRMLDMGFI-PDIRRILDLLPA-----ARQSLLFSAT 191

Query: 532 PGSWELEQCQGIIVE-QIIRP--TGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRIL 586
                 +    ++ E Q+I      +V   +   +      ++       L  +   + L
Sbjct: 192 FSDEIKKLADQMLKEPQLIEVARRNMVSETITHRVHPVSAGLKRNLLAHLLRHEPDTQAL 251

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           + V TK     L  +L    I    +H +    +R + +   + GK  VLV  ++   GL
Sbjct: 252 VFVATKLACSRLAHFLERHGIAADAIHGDKGQAQRTDTLEAFKSGKLRVLVATDVAARGL 311

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           DI +   V   +        +    +  IGR  R       +   +  +   LA  E  +
Sbjct: 312 DIDDLPSVINFE-----LPHTAEDYVHRIGRTGRAGRQGNAVSLVSAEERHHLA--EIEK 364

Query: 707 RREKQLEHNKKHNINPQS 724
             + Q+        +P+ 
Sbjct: 365 LIKLQIPQEIVPGFDPEP 382


>gi|322692486|gb|EFY84394.1| DEAD/DEAH box helicase [Metarhizium acridum CQMa 102]
          Length = 585

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 6/138 (4%)

Query: 568 VEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           V D+  +  +A     +  L+  +       LT    E     R++  +    ER EI+ 
Sbjct: 202 VNDITVKSWIAKAGDRKSTLVFCVDLAHVSGLTRKFREYGYDARFVTGDTPKQERSEILH 261

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D + G F VLV   +  EG DIP    + +    +     S+  L+Q IGR  R    K 
Sbjct: 262 DFKKGCFPVLVNCGVFTEGTDIPNIDCIVLGRPTR-----SRNLLVQMIGRGMRLHPGKK 316

Query: 687 ILYADTITKSIQLAIDET 704
             +   +  S++  I  T
Sbjct: 317 NCHVIDLVSSLETGIVTT 334


>gi|224067501|ref|XP_002193843.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
           [Taeniopygia guttata]
          Length = 617

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 23/214 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V+ I    G  
Sbjct: 343 RMIDMGFE----GDIRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPITINVGRA 396

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 397 GAASLDVVQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 455

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R GK DVL   ++  +GLD P    V   D  +E       +
Sbjct: 456 AIHGGKDQEERTKAIEAFRDGKKDVLGATDVASKGLDFPAIQHVINYDMPEE-----IEN 510

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
            +  IGR  R+ N+ +          I  A DE+
Sbjct: 511 YVHRIGRTGRSGNTGIATTF------INKACDES 538


>gi|328865226|gb|EGG13612.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 414

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 14/163 (8%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
           ++E+   + + ++ + +    VD   +I           + +    Q    I +   +  
Sbjct: 238 AYEINLMEELTLKGVTQYYAFVDERQKIH--------CLNTLFSKLQINQSI-IFCNSVN 288

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L + + E      Y+H++++   R  +  D R G    LV  +L   G+DI +  +
Sbjct: 289 RVELLAKKITELGYSCFYIHAKMQQAHRNRVFHDFRNGHCRNLVSSDLFTRGIDIQDVNV 348

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   D     F +   + +  IGR+ R  +  + +   T    
Sbjct: 349 VINFD-----FPKHSETYLHRIGRSGRFGHLGLAINLITYEDR 386


>gi|126208042|ref|YP_001053267.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           L20]
 gi|126096834|gb|ABN73662.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 406

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   E++  YL     RV  +  ++   +R+ ++     G+ D+LV  ++  
Sbjct: 255 RCMIFANTKHKCEEIWNYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLDILVATDVAA 314

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAID 702
            GL IPE   V   D             +  IGR  R   S   I +A         AI+
Sbjct: 315 RGLHIPEVTHVFNYD-----LPDDCEDYVHRIGRTGRAGESGHSISFACERYAVNLPAIE 369


>gi|75674512|ref|YP_316933.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
 gi|74419382|gb|ABA03581.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
          Length = 476

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 71/216 (32%), Gaps = 38/216 (17%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           +  T+  SAT    ++ +    ++    R        V +    + V+ +   I      
Sbjct: 186 KRQTLFFSAT-MPKDIAELANQMLRDPAR--------VAVTPVSSTVDRITQRIIQVDHA 236

Query: 582 G--------------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           G               R L+   TK  A+ + + L +  IR   +H       R  ++ +
Sbjct: 237 GKAAFLAQLLKQEPVNRALIFTRTKHGADKVVKSLAKSGIRSNAIHGNKSQNHRERVLAE 296

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            R G+   LV  ++   G+D+     V   D           + +  IGR AR       
Sbjct: 297 FRAGEIRTLVATDIAARGIDVDGISHVVNFD-----LPNVPETYVHRIGRTARAGTDGAA 351

Query: 688 L----------YADTITKSIQLAIDETTRRREKQLE 713
           +          Y   I K I++ +    RR   Q E
Sbjct: 352 ISLVAGAEEMAYLRDIEKLIRVVLPREDRRTSGQRE 387


>gi|60417515|emb|CAI59960.1| ATP-dependent RNA helicase (DEAD/DEAH box family) [Listeria
           ivanovii]
          Length = 474

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 87/254 (34%), Gaps = 27/254 (10%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           ++   +   +  SAT    E++       +  I      +    I     Q E+    + 
Sbjct: 171 QFLPKKRQNLFFSAT-MPEEMQDLIKRYQDDPIVIEMAAEKTNPITHIEMQTENKEKTLQ 229

Query: 577 LA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                +     ++   TK   ++L++ L    +    +H  ++  ER   + D + GK  
Sbjct: 230 DVLITENPDSAIIFCNTKNQVDELSDLLQ---VNTAKIHGGLRQEERFRAMDDFKSGKSR 286

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTI 693
            L+  ++   G+D+    LV   D   E     K + +  IGR  R  NS K I +  T 
Sbjct: 287 FLIATDVAGRGIDVENVTLVINYDLPIE-----KENYVHRIGRTGRAGNSGKAISFVKTN 341

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
              +   +++     +  +E            K++   +I+    E+A            
Sbjct: 342 ENPLLRDMEDM---LKITIE------------KKRKPTIIEVKASEEAFRKKQQKRPTIK 386

Query: 754 SLSKKKGKAHLKSL 767
               +K   ++  L
Sbjct: 387 KARGEKLNKNIMKL 400


>gi|85712866|ref|ZP_01043908.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
 gi|85693330|gb|EAQ31286.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
          Length = 587

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R L+ V T++   D+ E L  +  R   +  ++   +R + +  LR G   VLV  +++
Sbjct: 248 QRALVFVRTRQDTMDVAELLQRQGFRAAPLSGDLNQAQREQTVTQLRSGHIKVLVATDVV 307

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             GLD+PE   V   D   +    S    I   GRA R+  + +  
Sbjct: 308 ARGLDVPEITHVINYDLPSD--TESYVHRIGRTGRAGRSGEAILFY 351


>gi|297690644|ref|XP_002822724.1| PREDICTED: ATP-dependent RNA helicase DDX25-like [Pongo abelii]
          Length = 483

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 72/208 (34%), Gaps = 25/208 (12%)

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GF   S    R L  E         ++ SAT      E       E+II    ++    E
Sbjct: 257 GFSDHSVRIQRALPSEC------QMLLFSAT-----FEDSVWHFAERIIPDPNVIKLRKE 305

Query: 561 IRSARTQVEDVYDEINLAAQQGL------------RILLTVLTKRMAEDLTEYLYERNIR 608
                  +   Y        +              + ++   T++ A+ LT  + +   +
Sbjct: 306 -ELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRQNAKWLTVEMIQDGHQ 364

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD-KEGFLRS 667
           V  +  E+   +R  II+  R GK  VL+  N+   G+D+ +  +V   D   K+G    
Sbjct: 365 VSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPD 424

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITK 695
             + +  IGR  R     +      + K
Sbjct: 425 YETYLHRIGRTGRFGKKGLAFNMIEVDK 452


>gi|293391078|ref|ZP_06635412.1| ATP-dependent RNA helicase RhlB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951612|gb|EFE01731.1| ATP-dependent RNA helicase RhlB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 418

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 86/247 (34%), Gaps = 36/247 (14%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           +V +  + + QI  +   +  R   L   GF      D R L  +     +  T++ SAT
Sbjct: 146 YVRQGVIRLDQIQTVVLDEADRMFDL---GFI----RDIRYLLRKCPPPQQRLTMLFSAT 198

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG--------- 582
                 E     +              VEI   +   + + +E+   + +          
Sbjct: 199 LSYKVRELAFEDMNS---------PEYVEIEPEQKTGQQIKEELFYPSNRDKIPLLLTLL 249

Query: 583 -----LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                 R ++   TK   E++  YL     RV  +  +V   +R+ +++    G  D+LV
Sbjct: 250 EEEWPERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 309

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS 696
             ++   GL I E   V   D         +   +  IGR  R   S + I +A      
Sbjct: 310 ATDVAARGLHIAEVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGISISFACEQYAM 364

Query: 697 IQLAIDE 703
              AI+E
Sbjct: 365 NLPAIEE 371


>gi|148543598|ref|YP_001270968.1| helicase domain-containing protein [Lactobacillus reuteri DSM
           20016]
 gi|184153006|ref|YP_001841347.1| competence protein [Lactobacillus reuteri JCM 1112]
 gi|227363440|ref|ZP_03847564.1| ATP-dependent DNA helicase/translocase [Lactobacillus reuteri
           MM2-3]
 gi|325681951|ref|ZP_08161469.1| competence protein FA [Lactobacillus reuteri MM4-1A]
 gi|148530632|gb|ABQ82631.1| helicase domain protein [Lactobacillus reuteri DSM 20016]
 gi|183224350|dbj|BAG24867.1| competence protein [Lactobacillus reuteri JCM 1112]
 gi|227071540|gb|EEI09839.1| ATP-dependent DNA helicase/translocase [Lactobacillus reuteri
           MM2-3]
 gi|324978595|gb|EGC15544.1| competence protein FA [Lactobacillus reuteri MM4-1A]
          Length = 443

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 21/223 (9%)

Query: 507 CMDNRPLRFEEWNCLRPT--TIVVSATPGS---WELEQCQGIIVEQIIRPTGLVDPPVEI 561
              N  L +     ++     + ++ATPG     E++  + ++    +R  G + P +++
Sbjct: 215 YAANASLLYATKQAIKENGGCLYLTATPGDALLREIKSKRLVVNYLPLRYHGHLLPQIKV 274

Query: 562 RSART--------QVE-DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           R A          Q+   V  ++    ++G R LL +        +   L       R+ 
Sbjct: 275 RLAFGWRRRLERQQLPPQVIQQLQETLREGHRFLLFIPHIADLALVEAALRHSFATFRFA 334

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
                  ER+E ++ +R G +D LV  ++L  G+  PE   V +L AD   F  S ++L+
Sbjct: 335 TVHASDPERLEKVQKMRDGDYDFLVTTSILERGVTFPEID-VYVLGADDPVF--SSSALV 391

Query: 673 QTIGRAARNVNSKVILYADTITKS---IQLAIDETTR-RREKQ 711
           Q  GRA R  +         I  +   +  AI +     R+ Q
Sbjct: 392 QIAGRAGRAQSRPTGRVVFWINCNCRQVNQAISQVKYLNRKGQ 434


>gi|110289358|gb|ABG66172.1| ATP-dependent RNA helicase ste13, putative, expressed [Oryza sativa
           Japonica Group]
          Length = 362

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT             P  + +     + ++ I +    V+   ++         
Sbjct: 163 QLLMFSATFPVTVKDFKEKYLPRPYVINLMDELTLKGITQYYAFVEERQKVH-------- 214

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   +    E L + + E      Y+H+++    R  +  D R 
Sbjct: 215 CLNTLFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 273

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F ++  + +  +GR+ R  +  + +  
Sbjct: 274 GACRNLVCTDLFTRGIDIQAVNVVINFD-----FPKTSETYLHRVGRSGRFGHLGLAVNL 328

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            T      L        R +Q    +   I PQ
Sbjct: 329 ITYEDRFNL-------YRIEQELGTEIKTIPPQ 354


>gi|325119088|emb|CBZ54640.1| hypothetical protein NCLIV_050680 [Neospora caninum Liverpool]
          Length = 578

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 5/125 (4%)

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
              +      G +IL+   TKR A++LT  +         +H + K  ER  ++ + + G
Sbjct: 393 LMSLLRRIMDGSKILIFAETKRGADNLTRDMRVEGWPALSLHGDKKQEERTWVLDEFKNG 452

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  ++V  ++   GLD+ +   V   D             I  IGR  R           
Sbjct: 453 RNPIMVATDVASRGLDVKDIRHVINYD-----MPNQIEDYIHRIGRTGRAGAKGCAYTFF 507

Query: 692 TITKS 696
           T  KS
Sbjct: 508 TPDKS 512


>gi|312083163|ref|XP_003143746.1| RNA-dependent helicase [Loa loa]
 gi|307761088|gb|EFO20322.1| RNA-dependent helicase [Loa loa]
          Length = 403

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 5/113 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++ V TKR A+DLT ++         +H +    ER   + + R GK  +L+  ++  
Sbjct: 227 KTIIFVETKRKADDLTRWMRRDGWPALCIHGDKGQSERDWALSEFRSGKTPILLATDVAA 286

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            GLD+ +   V   D     +  +    +  IGR  R   + +     T   +
Sbjct: 287 RGLDVDDIKYVINFD-----YSNNSEDYVHRIGRTGRRDKTGIAYTFFTYANA 334


>gi|302835930|ref|XP_002949526.1| hypothetical protein VOLCADRAFT_59325 [Volvox carteri f.
           nagariensis]
 gi|300265353|gb|EFJ49545.1| hypothetical protein VOLCADRAFT_59325 [Volvox carteri f.
           nagariensis]
          Length = 722

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 13/180 (7%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEIN 576
            T++ SAT P   E+   +     VE  +    +V+  +    EIR  + +   + + + 
Sbjct: 256 QTVMFSATFPRQVEVLARKILTDPVEIQVGGRSIVNENITQFVEIRPEKERFHRLLEILG 315

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              ++G ++L+ V  +   ++L   L         +H      +R   I D +    ++L
Sbjct: 316 EWYERG-KLLIFVDKQESCDNLFRDLLRYGYPCLSLHGGKDQSDRESTIADFKGAVCNIL 374

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLD+ +  LV   D             +  +GR  R       +      + 
Sbjct: 375 VATSIAARGLDVKDLVLVVNYDV-----PNHHEDYVHRVGRTGRAGAKGTAITFIGPDEE 429


>gi|218187644|gb|EEC70071.1| hypothetical protein OsI_00680 [Oryza sativa Indica Group]
          Length = 618

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 78/206 (37%), Gaps = 27/206 (13%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIR--PTGLVDPPVEIRSARTQVEDVYDE 574
            T++V+AT           E E    +      +   T   D  +++  +  ++E +   
Sbjct: 300 QTVLVTATMTKAVQKLIDEEFEGIVHLRTTTFQKRVATARHDF-IKLSGSENKLEALLQV 358

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +  +  +G ++++   T   +  +  +L E  I     H EV   ER+E +   R  + D
Sbjct: 359 LEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVENLNKFRNEEGD 418

Query: 635 V--LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV----IL 688
              LV  +L   GLD+ +   V + D     F  +    +   GR AR     V    + 
Sbjct: 419 CPTLVCTDLAARGLDL-DVDHVIMFD-----FPSNSIDYLHRTGRTARMGAKGVAKKDVT 472

Query: 689 YADTITKSIQL-----AIDETTRRRE 709
            A  I ++++      A+     RR 
Sbjct: 473 LATRIEEAMKKNESLEALTTNNVRRA 498


>gi|165975989|ref|YP_001651582.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876090|gb|ABY69138.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 619

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 72/198 (36%), Gaps = 28/198 (14%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TK    D+TE       R   ++ ++    R + +  L+ G+ D+LV  ++   
Sbjct: 248 AIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAAR 307

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR------NVNSKVILYADTITKSIQ 698
           G+DI    LV   D   +    S    I   GRA R       V  +       I   ++
Sbjct: 308 GIDIERISLVVNFDIPLD--AESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 365

Query: 699 LAIDET---------TRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
             IDE           +RREK         +H+       EK  E+++ +   D     +
Sbjct: 366 KPIDEVAIPNHEILMAKRREKFKARVSKQLEHHD-----LEKYRELLEDLFTADQDHEEL 420

Query: 747 SIDAQQLSLSKKKGKAHL 764
           +     + +  ++ +  +
Sbjct: 421 AA---AMMMMLQEKQKLI 435


>gi|307545782|ref|YP_003898261.1| ATP-dependent RNA helicase DeaD [Halomonas elongata DSM 2581]
 gi|307217806|emb|CBV43076.1| K05592 ATP-dependent RNA helicase DeaD [Halomonas elongata DSM
           2581]
          Length = 555

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 75/206 (36%), Gaps = 31/206 (15%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             +  SAT    E+E+     + + ++ T      +E R++     D  ++  +    G 
Sbjct: 185 QRVFFSAT-LPTEIERIVNQYLVEPVKVT------IESRASSG---DNIEQRRVRIDGGA 234

Query: 584 R---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +                ++ V T+     L E L  R + V  +  ++    R   I  L
Sbjct: 235 KLEALARILEVEPVDAAIVFVRTRAACTTLMEQLSARGLNVASLSGDLDQSLRERTITRL 294

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-I 687
           + GK DVL+  ++   GLD+P    V   D       +   +    IGR  R   + V I
Sbjct: 295 KRGKIDVLIATDVAARGLDVPRITHVINYD-----LPQDAEAYTHRIGRTGRAGRAGVAI 349

Query: 688 LYADTITKSIQLAIDETTRRREKQLE 713
            +A          ++  T R+   +E
Sbjct: 350 TFAGNREGRKVGWLERATGRKMDDME 375


>gi|298571703|gb|ADI87855.1| hypothetical protein AKSOIL_0347 [uncultured bacterium Ak20-3]
          Length = 527

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 11/186 (5%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            +++ SAT  S      + I+   V   + P       +E        ++    +    +
Sbjct: 214 QSLMFSATISSEVNALSKQIMNTPVHISVAPKRASAEGIEQLLYSVPGDNKRALLFHLLE 273

Query: 581 QGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                R+++   TK  A  L++ L    IR + +HS      R  +    R GK  VLV 
Sbjct: 274 NDEMNRVIIFTRTKFGASKLSDSLIREGIRSKVIHSGKSQAARQSVWEHFRSGKLRVLVA 333

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            +L   G+D+     V   D           + I  IGR  R   + + + +     + +
Sbjct: 334 TDLASRGIDVDGISHVVNYD-----LPDCAETYIHRIGRTGRANKTGIALSFCSPDQRRL 388

Query: 698 QLAIDE 703
             AI+ 
Sbjct: 389 LTAIER 394


>gi|219122468|ref|XP_002181566.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406842|gb|EEC46780.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 491

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 17/230 (7%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           +  +DE+   + +         HR  +L       P+C          ++   P  +V  
Sbjct: 244 VFVLDEADHMVEEGG-------HRANSLVIRKVMPPTCQS------LFFSATFPPEVVQF 290

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
           A     + ++       + +    +    V+ R+      +   +I      G  I + V
Sbjct: 291 AEKMVEKPDKILIEDGPEFLVVDNIRQLWVDTRNYEGGKIEFLADIYSLMSIGQSI-VFV 349

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            T   A+ +   L         +HS+V    R   +   R G+ +VL+  N+L  G+D+ 
Sbjct: 350 GTVVQADKVYNTLTSSGYTCSVLHSKVGPENRDTTMEAFRNGESNVLITTNVLARGVDVD 409

Query: 650 ECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             GLV   D   DK+G    + + +  IGR  R       +   +  KSI
Sbjct: 410 NVGLVINYDVPIDKDGNPDHE-TYLHRIGRTGRFGRKGTAINLISDEKSI 458


>gi|189913376|ref|YP_001964605.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|167781444|gb|ABZ99741.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 534

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 76/212 (35%), Gaps = 28/212 (13%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT---PGSWELEQCQGIIVEQIIRPT 552
            + + GF     MD+    F      R  T++ SAT   P      + Q       I  T
Sbjct: 167 EMLDMGF-----MDDIESIFNLLPTKR-QTLLFSATMPEPIKKLASKYQTHPAHVKIAAT 220

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAA--------QQGLRILLTVLTKRMAEDLTEYLYE 604
                 +E      QV  + DE             +   + ++   TK+ A+DL   L  
Sbjct: 221 EKSSKNIE------QVYYIIDEAEREIAVVRILDYENPFKAIIFTKTKKEADDLKSTLSF 274

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           +   V  +H ++   +R ++++ L  G+  +LV  ++   GLD+ +  LV          
Sbjct: 275 KGYPVEALHGDLNQKQREQVLKSLHDGRVKILVATDVAARGLDVKDLSLVINYH-----L 329

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
                S    IGR  R   S   +   T  +S
Sbjct: 330 PFDSESYTHRIGRTGRAGKSGKAVTLVTTRES 361


>gi|303390845|ref|XP_003073653.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302800|gb|ADM12293.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 483

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 9/153 (5%)

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           P G+      ++ +   +      + L   Q    ++     +  E L   + E  I   
Sbjct: 321 PVGVKQFYTIVKPSEKLLCLRSLLLKLKINQ---CVIFCNNIKTVELLAMKVTEIGIPSY 377

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           ++HS++   +R  +  +   GK  +LV  +L+  G+D+P    V   D  K     S  S
Sbjct: 378 FIHSKMTQEDRNIVFHNFLKGKCKILVATDLITRGVDVPNTNYVINFDIPK-----SPES 432

Query: 671 LIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
            +  IGRA R     V I    T  K +   I+
Sbjct: 433 YLHRIGRAGRFGTPGVAISLVTTEEKEMLADIE 465


>gi|255719332|ref|XP_002555946.1| KLTH0H01562p [Lachancea thermotolerans]
 gi|238941912|emb|CAR30084.1| KLTH0H01562p [Lachancea thermotolerans]
          Length = 491

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 71/182 (39%), Gaps = 16/182 (8%)

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           LP    ++ L F     L     +V      +E+     + ++ I +        VE R 
Sbjct: 199 LPPV--HQSLLFSATFPLTVKEFMVKHLHKPYEINLMDELTLKGITQ----YYAFVEERQ 252

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
               +  ++ ++ +      + ++   +    E L + + +      Y H+ +K  ER +
Sbjct: 253 KLHCLNTLFSKLQI-----NQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQSERNK 307

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  + R GK   LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 308 VFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD-----FPKTAETYLHRIGRSGRFGH 362

Query: 684 SK 685
             
Sbjct: 363 LG 364


>gi|195438679|ref|XP_002067260.1| GK16276 [Drosophila willistoni]
 gi|194163345|gb|EDW78246.1| GK16276 [Drosophila willistoni]
          Length = 950

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 8/162 (4%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           +       + QI+     ++ P  +      ++++    N AA    +I++ V TK   E
Sbjct: 454 MNLSANHNIRQIVEICTEMEKPQRM---MRLLKEIVPTTNNAANNLNKIIIFVETKIKVE 510

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           D+ + +         +H +    ER  +++D R GK ++L+  ++   GLD+ +   V  
Sbjct: 511 DILQIIRTEGYTATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVIN 570

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            D     +  S  + +  IGR  R           T   + Q
Sbjct: 571 YD-----YPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQ 607


>gi|163792426|ref|ZP_02186403.1| DEAD/DEAH box helicase domain protein [alpha proteobacterium
           BAL199]
 gi|159182131|gb|EDP66640.1| DEAD/DEAH box helicase domain protein [alpha proteobacterium
           BAL199]
          Length = 446

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 73/234 (31%), Gaps = 36/234 (15%)

Query: 498 AEYGFRLPSCMDNRPLRFEEWNCLR-------PTTIVVSATPGSWELEQCQGIIVEQIIR 550
            EY F L        L F                T + SAT     + Q    + E ++R
Sbjct: 152 VEY-FVLDEADRMLDLGFVRDVKRIAALVPANRQTALFSAT-----MPQSIIELTESLLR 205

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL--------------LTVLTKRMAE 596
                   V+I    T +E +   +   A+   R L              + V TK   +
Sbjct: 206 NP----ERVQITPTSTPIERIQQSVMFVARANKRTLLARLLGAPDVSRAIVFVRTKHGVD 261

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
            + + L    +    +H       R   +   + G+  +LV  ++   G+D+ E   V  
Sbjct: 262 RVVDSLRRDGLTAEGLHGNKSQGARQTALDAFKRGRLPILVATDIAARGIDVHEISHVIN 321

Query: 657 LDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
           LD           + I  IGR AR     + +      +       E+  RR  
Sbjct: 322 LD-----LPDVPETYIHRIGRTARAGAGGIAVSFCENEEIGNFMAIESEIRRTI 370


>gi|161527600|ref|YP_001581426.1| DEAD/DEAH box helicase domain-containing protein [Nitrosopumilus
           maritimus SCM1]
 gi|160338901|gb|ABX11988.1| DEAD/DEAH box helicase domain protein [Nitrosopumilus maritimus
           SCM1]
          Length = 913

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 91/247 (36%), Gaps = 41/247 (16%)

Query: 456 EPPPTL---------FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPS 506
             P TL          +   E   + VDE H  +    G             E+   LP 
Sbjct: 129 TTPETLVILLTQVKYLDAFSELEWIVVDEVHELLSSERGTQL---SLSVERLEFNSELPL 185

Query: 507 CMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIRS 563
                              I +SAT G++E      +  +   +IIR T +    VE++ 
Sbjct: 186 TK-----------------IGLSATVGNFEEAGKFVVGTKRKCEIIRDTSVRKYDVEVKY 228

Query: 564 ARTQVEDVYDEINLAAQQ---GLRILLTVLTKRMAEDLTEYLYERNI-RVRYMHSEVKTL 619
               + DV ++I            +LL   T+  +E L   L E++I  +   H  +   
Sbjct: 229 VDGTISDVAEKIIEHVSNLNLDSPVLLFTNTRGESEFLASILKEKSIIPIELHHGSLSKE 288

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
            R E  ++LR GK  ++V  + L  GLDI    LV        G  R  + L+Q IGR+ 
Sbjct: 289 VREETEQNLREGKRGIVVCTSSLELGLDIGSVELVI-----HYGSPRQVSKLVQRIGRSR 343

Query: 680 RNVNSKV 686
            N N+  
Sbjct: 344 HNRNASA 350


>gi|326383298|ref|ZP_08204986.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326198048|gb|EGD55234.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 526

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 70/187 (37%), Gaps = 13/187 (6%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART----QVEDVYDEINLA 578
            T++ SAT PG         +     IR     D  V  R+ +        D  + +   
Sbjct: 221 QTMLFSATMPGPIVTLARTFLNRPTHIRAEHANDSAVHERTTQYVYRAHAMDKAELVARV 280

Query: 579 AQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            Q   R   ++   TKR A+ + + L ER   V  +H ++  + R + +   R GK DVL
Sbjct: 281 LQSEGRGATMIFTRTKRTAQKVADDLAERGFSVGAVHGDLGQVAREKALNKFREGKIDVL 340

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   G+D+ +   V             + + +  IGR  R   + + I   D    
Sbjct: 341 VATDVAARGIDVDDVTHVINY-----QCPDDEKTYVHRIGRTGRAGRTGIAITLVDWDEL 395

Query: 696 SIQLAID 702
                ID
Sbjct: 396 HRWELID 402


>gi|312148294|gb|ADQ30953.1| transcription-repair coupling factor [Borrelia burgdorferi JD1]
          Length = 1125

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 96/253 (37%), Gaps = 22/253 (8%)

Query: 173 LLGVTGSGKTFTMAKV--IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L G  G  K F + K+       +  +++     L      + KN       + F   Y 
Sbjct: 32  LTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTL-----DKIKNDLQAITNQIFELNY- 85

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
            + P  Y         K +  NE+I  +         +     +    S +  I    + 
Sbjct: 86  -FSPLVYKG----IGSKSTIFNERIKFL----INFYKKNPGIYITVLKSLLSKIPDKNTL 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            + I +++   ++   ++  +L+   Y++     I G F V G+ I+I+P   E    R+
Sbjct: 137 LKNIYKIEKNTNINTADIEKTLITLGYEKTLRVTIPGEFTVKGEIIDIYP-FGEQNPIRI 195

Query: 351 SMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKE-ELKMRLI 408
           ++  + IEEI +F PLT  K    +   +I      +    T+NT    IK  E K  L 
Sbjct: 196 ALNFDKIEEIKKFNPLTQLKHDNEILEFQILPKKEIIWDDKTINTLKTKIKSVEYKKILE 255

Query: 409 E--LEKEGRLLEA 419
           E   +KE +  E 
Sbjct: 256 ELDFKKETKTEEM 268



 Score = 47.0 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 22/190 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +     I P   V     + S    +  +   I     +
Sbjct: 733 CLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESFSELL--IKHAIESELSR 790

Query: 582 GLRILL-------TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             ++ L           K + E LT Y      R+  +H ++   E   I+ +     + 
Sbjct: 791 DGQVFLVNHNIEELYYLKTLIERLTPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQ 845

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  G+DIP    + I +A+K G  +    L Q  GR  R        +    +
Sbjct: 846 ILLATTIIENGIDIPNANTIIINNANKFGLAQ----LYQLKGRVGRGSQKAYAYFLYQDS 901

Query: 695 KSI-QLAIDE 703
           + + + +I+ 
Sbjct: 902 EKLNERSIER 911


>gi|303251558|ref|ZP_07337732.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649556|gb|EFL79738.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 619

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 72/198 (36%), Gaps = 28/198 (14%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TK    D+TE       R   ++ ++    R + +  L+ G+ D+LV  ++   
Sbjct: 248 AIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAAR 307

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR------NVNSKVILYADTITKSIQ 698
           G+DI    LV   D   +    S    I   GRA R       V  +       I   ++
Sbjct: 308 GIDIERISLVVNFDIPLD--AESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 365

Query: 699 LAIDET---------TRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
             IDE           +RREK         +H+       EK  E+++ +   D     +
Sbjct: 366 KPIDEVAIPNHEILMAKRREKFKARVSKQLEHHD-----LEKYRELLEDLFTADQDHEEL 420

Query: 747 SIDAQQLSLSKKKGKAHL 764
           +     + +  ++ +  +
Sbjct: 421 AA---AMMMMLQEKQKLI 435


>gi|297846156|ref|XP_002890959.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336801|gb|EFH67218.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 539

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 65/183 (35%), Gaps = 15/183 (8%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRP-TGLVDP--------PVEIRSARTQVED 570
                 ++ SAT      +  Q  +    I+   G VD          +E+   R + + 
Sbjct: 296 NKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVVIGSVDLAANHDVMQIIEVLDERARDQR 355

Query: 571 VYDEINLA-AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           +   +      Q  R+L+  L K  AE L  +L +R  +   +H      ER   +   +
Sbjct: 356 LVALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFK 415

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   +LV  ++   GLDIP+  +V         F  +    +  IGR  R     V   
Sbjct: 416 EGSCPLLVATDVAARGLDIPDVEVVINYS-----FPLTTEDYVHRIGRTGRAGKKGVAHT 470

Query: 690 ADT 692
             T
Sbjct: 471 FFT 473


>gi|294884893|gb|ADF47451.1| vasa PlVAS1-like protein [Dugesia japonica]
          Length = 802

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 8/142 (5%)

Query: 555 VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHS 614
           V   +     R +V    D I        + L+ V +KRMA+     L     +   +H 
Sbjct: 590 VKQEIIQTDQREKVNTAIDYIKTIPD--EKTLIFVESKRMADFFGIKLGFLGFKATTIHG 647

Query: 615 EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQT 674
           + +  +R   + D + G+ + +V  N+   GLDIP+   V  +D   +       + +  
Sbjct: 648 DREQEQREIALNDFKSGRVNFMVATNVAARGLDIPKVDNVINIDMPGD-----IDTYVHR 702

Query: 675 IGRAARNVN-SKVILYADTITK 695
           IGR  R  N  + I + D    
Sbjct: 703 IGRTGRCGNVGRAISFFDDTKD 724


>gi|302900149|ref|XP_003048204.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729136|gb|EEU42491.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 487

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 77/227 (33%), Gaps = 37/227 (16%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           +++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 217 QFHPKDRQVMLFSATFPLSVKDFSDKNMVSPYEINLMDELTLRGITQYYAFVEEKQKVH- 275

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H++++   R  
Sbjct: 276 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHAKMQQHARNR 327

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 328 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRYGH 382

Query: 684 SK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
               I   +   +     I+      E Q          P S+ + +
Sbjct: 383 LGLAINLINWDDRFNLYNIERDL-GTEIQ--------PIPASIDKSL 420


>gi|225075877|ref|ZP_03719076.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens
           NRL30031/H210]
 gi|224952823|gb|EEG34032.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens
           NRL30031/H210]
          Length = 463

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 77/208 (37%), Gaps = 34/208 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +   G +  ++ +   ++   VE    + ++E+     +    +  
Sbjct: 183 QTLLFSAT-----WDGAVGKLARKLTKDPEVI--EVERVDDQGKIEEQLLYCDDMRHKNR 235

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK M E + + LYE+      +H ++    R   + DLR G
Sbjct: 236 LLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA---RNVNSKVIL 688
           +  +LV  ++   G+D+P    V   D  K+         +  IGR             +
Sbjct: 296 RCKILVATDVAARGIDVPTITHVINYDLPKQ-----AEDYVHRIGRTGIAITFAEVNEYV 350

Query: 689 YADTITKSIQL-----AID--ETTRRRE 709
               I K I        I+  E TR+R+
Sbjct: 351 KVHKIEKYINRKLPELTIEGMEPTRKRK 378


>gi|195390582|ref|XP_002053947.1| GJ24162 [Drosophila virilis]
 gi|194152033|gb|EDW67467.1| GJ24162 [Drosophila virilis]
          Length = 710

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 13/180 (7%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            TI+ SAT  PG   L Q       Q+      +  T  V+  +E+         V    
Sbjct: 479 QTIMTSATWPPGVRRLAQSYMKDPIQVCVGSLDLAATHSVEQVIELLEDDRDKFHVLKSF 538

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                +  +I++    K  A+D++  L       + +H      +R + I D++ G   +
Sbjct: 539 VKNMSKTDKIIVFCGRKARADDVSSDLSLAGFATQCIHGNRDQSDREQAIADIKSGIVRI 598

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   GLDI +   V   D     F R+    +  +GR  R       +   T   
Sbjct: 599 LIATDVASRGLDIEDITHVINYD-----FPRNIEEYVHRVGRTGRAGRLGTSISFITRDD 653


>gi|187450441|emb|CAO85519.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450443|emb|CAO85520.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450445|emb|CAO85521.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450447|emb|CAO85522.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450449|emb|CAO85523.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450451|emb|CAO85524.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450453|emb|CAO85525.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450455|emb|CAO85526.1| ENSANGG00000013284 protein [Anopheles arabiensis]
 gi|187450457|emb|CAO85527.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450459|emb|CAO85528.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450461|emb|CAO85529.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450463|emb|CAO85530.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450465|emb|CAO85531.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450467|emb|CAO85532.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450509|emb|CAO85534.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450511|emb|CAO85535.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450513|emb|CAO85536.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450515|emb|CAO85537.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450517|emb|CAO85538.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450519|emb|CAO85539.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450521|emb|CAO85540.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450523|emb|CAO85541.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450525|emb|CAO85542.1| ENSANGG00000013284 protein [Anopheles gambiae]
 gi|187450527|emb|CAO85543.1| ENSANGG00000013284 protein [Anopheles gambiae]
          Length = 225

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            +I++ V TK+  +DL + +         +H +    ER  +++D R GK  +LV  ++ 
Sbjct: 86  NKIIIFVETKKKVDDLLKNIVRDGYGATSIHGDKSQTERDYVLQDFRHGKSTILVATDVA 145

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             GLD+ +   V   D     +  S    I  IGR  R           T   
Sbjct: 146 ARGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGRCSQYGTAYTFFTPNN 193


>gi|50293589|ref|XP_449206.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74608568|sp|Q6FKN8|DBP5_CANGA RecName: Full=ATP-dependent RNA helicase DBP5
 gi|49528519|emb|CAG62178.1| unnamed protein product [Candida glabrata]
          Length = 504

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 1/114 (0%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V  K  A  L   L     +V  +HS+++T ER  +I D R G+  VL+  N+L  G
Sbjct: 356 IIFVAKKDTANLLYGKLKHEGHQVSILHSDLRTDERDRLIDDFREGRSKVLITTNVLARG 415

Query: 646 LDIPECGLVAILD-ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           +DIP   +V   D       +    + +  IGR  R   + V +      KS +
Sbjct: 416 IDIPSVSMVVNYDLPTLPNGMPDYATYVHRIGRTGRFGRTGVAISFVHDKKSFK 469


>gi|46138553|ref|XP_390967.1| hypothetical protein FG10791.1 [Gibberella zeae PH-1]
 gi|91206578|sp|Q4HW67|DHH1_GIBZE RecName: Full=ATP-dependent RNA helicase DHH1
          Length = 486

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 77/227 (33%), Gaps = 37/227 (16%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           +++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 210 QFHPKDRQVMLFSATFPLSVKDFSDKNMVSPYEINLMDELTLRGITQYYAFVEEKQKVH- 268

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H++++   R  
Sbjct: 269 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHAKMQQHARNR 320

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 321 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRYGH 375

Query: 684 SK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
               I   +   +     I+      E Q          P S+ + +
Sbjct: 376 LGLAINLINWDDRFNLYNIERDL-GTEIQ--------PIPASIDKSL 413


>gi|262172263|ref|ZP_06039941.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451]
 gi|261893339|gb|EEY39325.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451]
          Length = 416

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 90/257 (35%), Gaps = 35/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L EY        +D        I  +   +  R     + GF  P+   +R     
Sbjct: 132 TPGRLLEY--------IDAERFDCRAIEWLILDEADRM---LDMGFG-PTV--DRLSAEC 177

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL-VDPPVEIRSARTQVEDVYDEI 575
            W   R  T++ SAT    E    +G   + +  P  +  +PP   R   +Q     D++
Sbjct: 178 RW---RKQTLLFSAT---LEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWYHRADDM 231

Query: 576 NLAAQ--------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
               +        Q  R ++ + T+    DL   L +  I   ++  E+    R   I  
Sbjct: 232 PHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITR 291

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV- 686
            R G  ++L+  ++   G+D+P+   V   D       RS    +  IGR  R     + 
Sbjct: 292 FREGSVNILLATDVAARGIDVPDISHVINFD-----LPRSADVYLHRIGRTGRAGKKGIA 346

Query: 687 ILYADTITKSIQLAIDE 703
           I   +   + +   ++ 
Sbjct: 347 ISLVEAHDQPMMARVER 363


>gi|167385157|ref|XP_001737228.1| ATP-dependent RNA helicase eIF4A [Entamoeba dispar SAW760]
 gi|165900043|gb|EDR26499.1| ATP-dependent RNA helicase eIF4A, putative [Entamoeba dispar
           SAW760]
          Length = 179

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 66/172 (38%), Gaps = 15/172 (8%)

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           G+    +++     +++ + D +         + +   +K   E +   L   N  V   
Sbjct: 18  GIKQFYIDVVKDEYKIDTLID-LYQVISVNQSV-IFCNSKNRVEWIQRRLQAHNYPVSIT 75

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H ++   ER  ++ + R G   +L+  ++L  G+D+ +  LV   D        S  S I
Sbjct: 76  HGDLTMEERNNVLNEFRQGATRILITTDMLSRGIDVQQVSLVINFDMPV-----SDESYI 130

Query: 673 QTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQS 724
             IGR+AR     V +   T  +     +D   R    Q  +  K    P++
Sbjct: 131 HRIGRSARFGRKGVAIDFITTEE-----MDTINR---LQKTYETKIVPLPKT 174


>gi|88856781|ref|ZP_01131435.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
 gi|88813949|gb|EAR23817.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
          Length = 499

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 60/179 (33%), Gaps = 20/179 (11%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
                 I + AT     L Q    I   + R   L    V  R            I  + 
Sbjct: 195 RFMNKPIHIRATDPDEGLTQKN--IKHVVYRAHNLDKDEVIAR------------ILQSE 240

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +G + ++   TKR A  L E L +R      +H ++   +R   +   + GK D+L+  
Sbjct: 241 GRG-KTVVFTRTKRAAAKLVEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKDILIAT 299

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           ++   G+D+ +   V               + +   GR  R   + V +        ++
Sbjct: 300 DVAARGIDVNDVTHVINH-----TIPDDHDTYLHRAGRTGRAGKTGVAVTFVDWADMLK 353


>gi|330994757|ref|ZP_08318679.1| Cold-shock DEAD box protein A-like protein [Gluconacetobacter sp.
           SXCC-1]
 gi|329758018|gb|EGG74540.1| Cold-shock DEAD box protein A-like protein [Gluconacetobacter sp.
           SXCC-1]
          Length = 376

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 74/193 (38%), Gaps = 19/193 (9%)

Query: 522 RPTTIVVSAT--PGSWEL------EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
           R  T++ SAT  P   EL         +  +  +      +    + +   R + +    
Sbjct: 182 RHQTLLFSATLPPAMAELAARLLHRPTRVSMAVEDAPAPRIAQYAIFV-PMRHKTQATLA 240

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +     Q  R+++ V T++ A+ +   +    +    +H +     R  ++RD R G+ 
Sbjct: 241 CLRQYGTQ--RVMVFVRTRQEADGVARAISAL-VPAIAIHGDHSQARRERMLRDFRQGRV 297

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VLV  +++  G+DI +  LV   D           S +  IGR AR     V +     
Sbjct: 298 GVLVATDVMARGIDIDDVALVINHD-----IPPQPESYVHRIGRTARAGRRGVAVALCAP 352

Query: 694 TKSIQLAIDETTR 706
            +  + A+ E  R
Sbjct: 353 EE--RQALREIER 363


>gi|326523585|dbj|BAJ92963.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 653

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 73/195 (37%), Gaps = 25/195 (12%)

Query: 524 TTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVD-PPVEIRSARTQVEDVYDEI 575
            TI+VSAT           E E  + +      +         +++  +  ++E +   +
Sbjct: 310 QTILVSATMTKGVQKLIDEEFEGIEHLRTSTFQKRIATARHDFIKLSGSENKLEALLQVL 369

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             +  +G ++++   T   +  +  +L E +I     H EV   ER+E +   R  + D 
Sbjct: 370 EPSLAKGNKVMVFCNTLNSSRAVDHFLTENHISTVNYHGEVPAEERVENLNKFRNEEGDC 429

Query: 636 --LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL----- 688
             LV  +L   GLD+ E   V + D     F ++    +   GR AR      +      
Sbjct: 430 PTLVCTDLAARGLDL-EVDHVIMFD-----FPKNSIDYLHRTGRTARMGAKGKVTSLIAK 483

Query: 689 ----YADTITKSIQL 699
                A  I  +++ 
Sbjct: 484 KDVGLATRIEDAMKK 498


>gi|325088388|gb|EGC41698.1| DEAD/DEAH box RNA helicase [Ajellomyces capsulatus H88]
          Length = 547

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TK  A+ + +YLY   +    +HS+    ER + +R  +  K  ++V   +  
Sbjct: 353 RTLVFVNTKAQADLIDDYLYNMGLPSTSIHSDRTQREREDALRAFKTAKSPIMVATGVSA 412

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            GLDI     V   D             I  IGR AR  N  +        ++  +A D
Sbjct: 413 RGLDIKNVMHVINFDMPSAAHG-GIEEYIHRIGRTARIGNEGLATSFYNHDRNSDIAAD 470


>gi|322708424|gb|EFZ00002.1| ATP dependent RNA helicase (Dhh1), putative [Metarhizium anisopliae
           ARSEF 23]
          Length = 489

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 69/201 (34%), Gaps = 28/201 (13%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           +++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 204 QFHPKDRQVMLFSATFPLSVKDFSDKNMVSPYEINLMDELTLRGITQYYAFVEEKQKVH- 262

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ ++   R  
Sbjct: 263 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMQQQARNR 314

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 315 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRYGH 369

Query: 684 SK-VILYADTITKSIQLAIDE 703
               I   +   +     I+ 
Sbjct: 370 LGLAINLINWDDRFNLYNIER 390


>gi|322700752|gb|EFY92505.1| ATP-dependent RNA helicase DHH1 [Metarhizium acridum CQMa 102]
          Length = 502

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 69/201 (34%), Gaps = 28/201 (13%)

Query: 517 EWNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           +++      ++ SAT P              +E+     + +  I +    V+   ++  
Sbjct: 217 QFHPKDRQVMLFSATFPLSVKDFSDKNMVSPYEINLMDELTLRGITQYYAFVEEKQKVH- 275

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ ++   R  
Sbjct: 276 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMQQQARNR 327

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 328 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRYGH 382

Query: 684 SK-VILYADTITKSIQLAIDE 703
               I   +   +     I+ 
Sbjct: 383 LGLAINLINWDDRFNLYNIER 403


>gi|319441074|ref|ZP_07990230.1| ATP-dependent RNA helicase [Corynebacterium variabile DSM 44702]
          Length = 732

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK   E+L + L  R      ++ ++   +R   +  L+ G+ D+LV  ++   
Sbjct: 311 MIIFVRTKSDTEELADKLRARGFEAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAAR 370

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D  ++       S +  IGR  R   +   IL+     + +   I+ 
Sbjct: 371 GLDVDRITHVFNYDIPRD-----TESYVHRIGRTGRAGRTGRAILFVTPRERRLLKNIER 425

Query: 704 TTR 706
            T+
Sbjct: 426 ATK 428


>gi|294678037|ref|YP_003578652.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003]
 gi|294476857|gb|ADE86245.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003]
          Length = 448

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
              G   ++   TK  ++ LT+ L +    V  +H      +R   +   R  +  VLV 
Sbjct: 242 RHPGELAVVFNRTKHGSDKLTKLLEKWGFSVTAIHGNKSQGQRERALSAFRASEVQVLVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSI 697
            ++   GLDIP+   V   D           + +  IGR AR   + + + +   +  S 
Sbjct: 302 TDVAARGLDIPQVAHVYNYD-----LPNVPENYVHRIGRTARAGRDGRAVAFCGPLEMSD 356

Query: 698 QLAID 702
             AI+
Sbjct: 357 LRAIE 361


>gi|288802661|ref|ZP_06408099.1| transcription-repair coupling factor [Prevotella melaninogenica
           D18]
 gi|288334811|gb|EFC73248.1| transcription-repair coupling factor [Prevotella melaninogenica
           D18]
          Length = 1118

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 69/195 (35%), Gaps = 7/195 (3%)

Query: 199 MAPNKILAAQLYSEFKNFF----PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
           M  +   A   Y++ K           V   + +   Y+      + D     E    E 
Sbjct: 1   MLNDNDEAGYFYNDLKTIAMPVDGEGKVAEVLFFPSSYRRAVKYGQRD--AGNEILRTEV 58

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           + R+   A+ +       IV    +    + S +   +  + L +   ++  E+  +L  
Sbjct: 59  LTRLSALASCADNALPLYIVTEPSALSELVVSKKQLDERRLTLTVDQHIDIVEVEKTLRS 118

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             +   D     G F V G  I+++ S   ++ +R+  FG+DIE I  F   T      +
Sbjct: 119 FGFTETDYVYEPGQFAVRGSIIDVY-SFSNELPFRIDFFGDDIETIRNFEVETQLSTEKL 177

Query: 375 ETIKIYANSHYVTPR 389
             ++I      ++  
Sbjct: 178 TRVEIVPELTTMSEE 192



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 17/195 (8%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
           T+ +SATP    L+    G     I+R       P++   A    E + D IN    +  
Sbjct: 706 TLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEIASFSHEVIADAINFEMSRNG 765

Query: 584 RILLTVLTK-----RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++   V  +      +A  + +Y+ +  I +   H ++K  E  EI+       +DVL+ 
Sbjct: 766 QV-YFVNDRISNLPEIANLIKKYVPDCRIAIG--HGQMKPEELEEIVMGFMNYDYDVLLS 822

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             ++  G+DI     + I DA + G     + L Q  GR  R+ N K   Y   +     
Sbjct: 823 TTIVENGIDISNANTIIINDAHRFGL----SDLHQMRGRVGRS-NKKAFCY---LLAPPL 874

Query: 699 LAIDETTRRREKQLE 713
            A++   RRR + LE
Sbjct: 875 AALNPEARRRLEALE 889



 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGL 646
           TVL  +  +   + L +  +RV Y+       +  +++ DL  GK D+LVG + L+ + +
Sbjct: 614 TVLAFQHYQTFKKRLKDMPVRVDYLSRARSAKQTKQVLEDLAEGKIDILVGTHKLIGKSV 673

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQ 673
              + GL+ I +  K G + +K  L Q
Sbjct: 674 KWHDLGLLIIDEEQKFG-VSTKEKLRQ 699


>gi|222423183|dbj|BAH19569.1| AT4G16630 [Arabidopsis thaliana]
          Length = 686

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 103/280 (36%), Gaps = 40/280 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDV 571
            R  T++ SAT  + E+++   + + + +R         P GL +  V IR  R   ++ 
Sbjct: 343 KRRQTMLFSAT-MTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEA 401

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       ++++   TK+ A  L        ++   +H  +   +R++ +   R  
Sbjct: 402 VLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQ 461

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYA 690
           + D L+  ++   GLDI     V      +E       S +  +GR AR       + + 
Sbjct: 462 EVDFLIATDVAARGLDIIGVQTVINYACPRE-----IDSYVHRVGRTARAGREGYAVTFV 516

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
               +S+   I        K++    K  + P+    K  ++ID   +ED  +  IS + 
Sbjct: 517 TDSDRSLLKVI-------AKKVGSKLKSRVIPEQSIVKWSQIIDE--MEDQYSAVISAER 567

Query: 751 QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            + +L K + +         M               RDEI
Sbjct: 568 DERALRKAEMEFAKAE---NMLEH------------RDEI 592


>gi|187450507|emb|CAO85533.1| ENSANGG00000013284 protein [Anopheles gambiae]
          Length = 225

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            +I++ V TK+  +DL + +         +H +    ER  +++D R GK  +LV  ++ 
Sbjct: 86  NKIIIFVETKKKVDDLLKNIVRDGYGATSIHGDKSQTERDYVLQDFRHGKSTILVATDVA 145

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
             GLD+ +   V   D     +  S    I  IGR  R           T   
Sbjct: 146 ARGLDVEDVKYVINFD-----YPNSSEDYIHRIGRTGRCSQYGTAYTFFTPNN 193


>gi|172039349|ref|YP_001805850.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
 gi|171700803|gb|ACB53784.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
          Length = 480

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 8/133 (6%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +     ++ V TK+ A DLT  L E    V   H  +   +R  ++   R GK  ++V 
Sbjct: 239 IEDPESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFREGKIKLVVA 298

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLD+     V   D        +  + I  IGR  R   +   I   + I + +
Sbjct: 299 TDIAARGLDVENLSHVINYD-----LPDNSETYIHRIGRTGRAGKTGTAISLVEPIDRRM 353

Query: 698 QLAIDETTRRREK 710
              I+   R R+K
Sbjct: 354 VRQIE--KRLRQK 364


>gi|189913047|ref|YP_001964936.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167777723|gb|ABZ96023.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 529

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 76/212 (35%), Gaps = 28/212 (13%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT---PGSWELEQCQGIIVEQIIRPT 552
            + + GF     MD+    F      R  T++ SAT   P      + Q       I  T
Sbjct: 162 EMLDMGF-----MDDIESIFNLLPTKR-QTLLFSATMPEPIKKLASKYQTHPAHVKIAAT 215

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAA--------QQGLRILLTVLTKRMAEDLTEYLYE 604
                 +E      QV  + DE             +   + ++   TK+ A+DL   L  
Sbjct: 216 EKSSKNIE------QVYYIIDEAEREIAVVRILDYENPFKAIIFTKTKKEADDLKSTLSF 269

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           +   V  +H ++   +R ++++ L  G+  +LV  ++   GLD+ +  LV          
Sbjct: 270 KGYPVEALHGDLNQKQREQVLKSLHDGRVKILVATDVAARGLDVKDLSLVINYH-----L 324

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
                S    IGR  R   S   +   T  +S
Sbjct: 325 PFDSESYTHRIGRTGRAGKSGKAVTLVTTRES 356


>gi|156553787|ref|XP_001602045.1| PREDICTED: similar to GH10652p [Nasonia vitripennis]
          Length = 682

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 81/218 (37%), Gaps = 27/218 (12%)

Query: 519 NCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD-----------PPVEIRSAR 565
             +RP   T++ SAT         +  + + I    G +               E     
Sbjct: 325 EQIRPDRQTLMWSATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKE 384

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            ++  + +EI+  A+   + ++ V TKR  +++T  +     +   +H +    ER  ++
Sbjct: 385 GKLMKLLEEISQEAEN--KTIIFVETKRKVDEITRAINRYGWQAIGIHGDKSQQERDYVL 442

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R  +  +LV  ++   GLD+ +   V  LD     +  +    +  IGR  R+  + 
Sbjct: 443 NQFRSSRSAILVATDVAARGLDVEDVKFVINLD-----YPSNSEDYVHRIGRTGRSQRTG 497

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
              YA     +   A D        Q+    K  +NP+
Sbjct: 498 TA-YAFFTPGNAHKAND------LIQVLEEAKQVVNPK 528


>gi|327394851|dbj|BAK12273.1| ATP-dependent RNA helicase SrmB [Pantoea ananatis AJ13355]
          Length = 442

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 69/184 (37%), Gaps = 18/184 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVEDVYDEINLAAQ 580
           R  T++ SAT    E E  +      +  P  L   P    R    Q     D++    +
Sbjct: 181 RKQTMLFSAT---LEGEHIKDFAERLLNEPVELEADPSRRERKKIQQWYHRADDLEHKTK 237

Query: 581 ---------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                    +  R ++ V  +    +L  +L++  IR  Y+  E+   +R E I+ L  G
Sbjct: 238 LLVHLLKQPEVTRSIVFVRKRERLHELVSWLHDAGIRTSYLEGEMVQAKRNEAIKRLVEG 297

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           + +VLV  ++   G+D+ +   V   D  +     +  + +  IGR  R     + +   
Sbjct: 298 RVNVLVATDIAARGIDVDDVSHVINFDMPR-----TADTYLHRIGRTGRAGRKGIAISLV 352

Query: 692 TITK 695
               
Sbjct: 353 EAHD 356


>gi|323474157|gb|ADX84763.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           REY15A]
 gi|323476770|gb|ADX82008.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           HVE10/4]
          Length = 360

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 17/189 (8%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-VEIR-SARTQVEDVYDE 574
            ++   P  I+  A     E  +    IV    +P   V    V++R     +V  + +E
Sbjct: 181 FFSATIPDEIMTLA----EEFSKDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLLEE 236

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I      G +IL+   T+  A  L   L  + + V  +  ++    R++     + GK++
Sbjct: 237 I-----NGEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYN 291

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           VLV  +L   G+DI +   V   D  ++       + I  +GR  R       I +    
Sbjct: 292 VLVATDLASRGIDIIDVNKVINFDIPRDV-----ETYIHRVGRTGRMGRVGQAITFYTFR 346

Query: 694 TKSIQLAID 702
              +   I+
Sbjct: 347 EADMIKRIN 355


>gi|332652507|ref|ZP_08418252.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium
           D16]
 gi|332517653|gb|EGJ47256.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium
           D16]
          Length = 628

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 72/223 (32%), Gaps = 37/223 (16%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            + + GF       +   +  +W   +  T+  SAT    E+ +    ++    R     
Sbjct: 157 RMLDMGFI------HDVKKILKWLPEKKQTLFFSAT-MPKEIAELVNSLLHHPAR----- 204

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRI---------------LLTVLTKRMAEDLTE 600
              V +    + VE +   +     +G +                L+   TK  A  +  
Sbjct: 205 ---VAVDPVSSPVEAIRQSVYF-VDRGNKTKLLSLLMDQLGVKNALVFTRTKHGANKVAR 260

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
            L +  I    +H       R + + D + G    LV  ++   GLDI E   V   +  
Sbjct: 261 DLVKAGITAAAIHGNKSQTARQQALADFKSGAIRCLVATDIAARGLDIEELSHVFNYN-- 318

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAID 702
                    + +  IGR  R  +    + + D   K +   I+
Sbjct: 319 ---LPEVPETYVHRIGRTGRAGHGGTAVAFCDFSEKPLLKEIE 358


>gi|331092062|ref|ZP_08340893.1| hypothetical protein HMPREF9477_01536 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402263|gb|EGG81834.1| hypothetical protein HMPREF9477_01536 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 528

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 97/244 (39%), Gaps = 20/244 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      E+ +      E I      +    +     E++  + + E +   +
Sbjct: 180 QTVLFSATMPKAIMEITKKFQKKAEVIKVTKKELTVPNIEQFYYEVKP-KNKEEVLARLL 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++   +    ++   TK+  + L   L  R      +H ++K ++R  +++  R GK D+
Sbjct: 239 DIYTPK--LSVVFCNTKKQVDLLVTSLLGRGYFAAGLHGDMKQVQRDRVMQGFRSGKTDI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+D+ E   V   D       +     +  IGR  R        ++    K
Sbjct: 297 LVATDVAARGIDVDEVEAVFNYD-----LPQDDEYYVHRIGRTGRAGRVG-RSFSFVSGK 350

Query: 696 SIQLAIDETTRRREKQLEHNK--KHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
            +   + E  R  + ++   K    N    +  E I++ ID I++ +  T  I+   +++
Sbjct: 351 EVYK-LKEIQRYCKTKIYAQKVPSLNDVATTKMENILDDIDQIIVNEDLTLMINAIQERV 409

Query: 754 SLSK 757
           + S 
Sbjct: 410 NDSD 413


>gi|331216814|ref|XP_003321086.1| ATP-dependent RNA helicase dhh1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300076|gb|EFP76667.1| ATP-dependent RNA helicase dhh1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 407

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 64/185 (34%), Gaps = 27/185 (14%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            +       ++ SAT                +E+   + + ++ + +    ++   ++  
Sbjct: 69  SFLHKDRQVMLFSATFPMIVKDFKDKHMIKPYEINLMEELTLQGVTQYYAFLEERQKVH- 127

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q     ++   +    E L   + +      Y H+++    R  
Sbjct: 128 -------CLNTLFSKLQINQ-AIIFCNSTNRVELLARKITDIGYSCFYSHAKMLQQHRNR 179

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 180 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 234

Query: 684 SKVIL 688
             + +
Sbjct: 235 RGIAI 239


>gi|304408600|ref|ZP_07390221.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307305428|ref|ZP_07585176.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304352421|gb|EFM16818.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306911731|gb|EFN42156.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 467

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 85/244 (34%), Gaps = 37/244 (15%)

Query: 555 VDPPVEIRSART-----QVEDVYDEINLAAQQG-----------LRILLTVLTKRMAEDL 598
           V+ PVEI  AR      Q++     ++   +              + L+ + TK+ A  L
Sbjct: 200 VENPVEIEIARDSANAPQIDQWLITVDKDKKSALLSKLITEQAWEQALIFIQTKQGAAKL 259

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
              L +R I    +HS      R +++ D + GK   LV   +   G+DI     V   D
Sbjct: 260 VSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFLVATGVASRGIDIDALTRVVNYD 319

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-----SIQLAIDETTRRREKQ-L 712
              E         I  IGR  R       +   +        +I+  +D    R+E +  
Sbjct: 320 LPDE-----ADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCAIERRLDHIIVRKEIEGF 374

Query: 713 EHNKK----------HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKA 762
             NK+           N  P++ K +  +       ++ +         + + SK + KA
Sbjct: 375 VPNKEVPVSILDFVPKNTTPKTFKARAPDARTSRPAKEGSFETAHAKKHRSAKSKPEAKA 434

Query: 763 HLKS 766
            +  
Sbjct: 435 TVAR 438


>gi|259506519|ref|ZP_05749421.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
 gi|259165939|gb|EEW50493.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
          Length = 424

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 75/214 (35%), Gaps = 46/214 (21%)

Query: 496 TLAEYGFRLPSCMD-NRPLRFEEWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTG 553
            + + GF LP      R L        +  T++ SAT PG              +     
Sbjct: 167 EMLDLGF-LPDIEKIMRALT------HKHQTMLFSATMPGP------------ILTLARS 207

Query: 554 LVDPPVEIRS----------ARTQV---------EDVYDEINLAAQQGLRILLTVLTKRM 594
            +D PV IR+             Q+         E V   I  A  +G + ++   TKR 
Sbjct: 208 FLDKPVHIRAESADSAATHATTRQIVFQAHRMDKEAVTARILQARGRG-KTIIFARTKRT 266

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A  + E L  R   V  +H ++    R   +   R GK D+LV  ++   G+DI +   V
Sbjct: 267 AAQVAEDLAARGFTVGSVHGDMGQPARERSLNAFRSGKIDILVATDVAARGIDIDDVTHV 326

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
                          + +  IGR  R  ++   +
Sbjct: 327 INYQT-----PDDPMTYVHRIGRTGRAGHTGTAV 355


>gi|193683780|ref|XP_001952119.1| PREDICTED: ATP-dependent RNA helicase abstrakt-like [Acyrthosiphon
           pisum]
          Length = 615

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 74/211 (35%), Gaps = 17/211 (8%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
                 + + GF      D R + F  +   R  T++ SAT         +  +V+ I  
Sbjct: 336 MDEADRMIDMGFE----EDVRTI-FSFFQGQR-QTLLFSATMPKKIQNFARSALVKPITI 389

Query: 551 PTG-----LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
             G      ++   E+   + Q   V   +    +    +L+    K+  + + EYL  +
Sbjct: 390 NVGRAGAASMNVIQEVEYVK-QEAKVVYLLECLKKTTPPVLIFAEKKQDVDAIHEYLLLK 448

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +    +H      ER + +   R G+ DVLV  ++  +GLD  E   V   D       
Sbjct: 449 GVEAVAIHGGKDQEERSKSVDAFRKGQKDVLVATDVASKGLDFEEIQHVINYD-----MP 503

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKS 696
               + +  IGR  R+  + +          
Sbjct: 504 DDVENYVHRIGRTGRSGKTGIATTFINKAND 534


>gi|306840076|ref|ZP_07472862.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
 gi|306404804|gb|EFM61097.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
          Length = 482

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 16/191 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVED------VYD 573
            T+  SAT    E+ +     +   +R            V  R  ++  +D      + D
Sbjct: 180 QTLFFSAT-MPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRD 238

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I          ++    K+   +L   L         +H ++    R+ ++   + GK 
Sbjct: 239 LIQSEGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKL 298

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIP+   V   D             +  IGR  R   S       T+
Sbjct: 299 RLLVASDVAARGLDIPDVSHVFNFDVPI-----HAEDYVHRIGRTGRAGRSGKAFTIVTL 353

Query: 694 TKSIQLAIDET 704
           + +  LA  E+
Sbjct: 354 SDTKYLAAIES 364


>gi|146283021|ref|YP_001173174.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri A1501]
 gi|145571226|gb|ABP80332.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri A1501]
          Length = 455

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 23/223 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            + + GF      D + L  E     R  T++ SAT G   L +    ++   +     +
Sbjct: 168 RMLDMGF----AEDMQRLVGEC--QKRQQTLLFSATSGGAGLREMVAKVLRDPL--HLQL 219

Query: 556 DPPVEIR-SARTQV---EDV--YDEINLAAQQGL---RILLTVLTKRMAEDLTEYLYERN 606
           +   E+  S R Q+   +DV   +++           + ++   T+  A+ L  +L   +
Sbjct: 220 NRVSELNESTRQQIITADDVAHKEKLVHWLLANESYQKAVIFTNTRAQADRLYGHLVASD 279

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
           I+V  +H E    ER   I  L+ G   VLV  ++   GLDI    LV   D  + G   
Sbjct: 280 IKVFVLHGEKDQKERKLAIERLKQGGVKVLVATDVAARGLDIEGMDLVINFDMPRSG--- 336

Query: 667 SKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                +  IGR  R       I        ++  +I+   ++R
Sbjct: 337 --DEYVHRIGRTGRAGAEGLAISLICHNDWNLMSSIERYLKQR 377


>gi|4409804|gb|AAD20136.1| autoaggregation-mediating protein [Lactobacillus reuteri ATCC
           53608]
          Length = 497

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 93/262 (35%), Gaps = 17/262 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVE---IRSARTQVEDVYDEIN 576
            T++ SAT    E+++     +       I+   L    V+   +R+   +  D+   + 
Sbjct: 176 QTLLFSAT-MPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLI 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                 L  ++   TKR  ++L++ L  R      +H ++   +R +I+   +  + D+L
Sbjct: 235 DVQDPDL-TIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDIL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK- 695
           V  ++   GLDI     V   D           S +  IGR  R  +  V L   T  + 
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEM 348

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
                I++ TR R   L+           V     ++ + I  +       + +    + 
Sbjct: 349 DYLHEIEKLTRVRMLPLKPPTAEEAFKGQVASAFNDIDELIAQDSTDRYEEAAEKLLETH 408

Query: 756 SKKKGKAHLKSLRKQMHLAADN 777
           +     A L  L      AA  
Sbjct: 409 NATDLVAAL--LNNMTKEAASE 428


>gi|319408422|emb|CBI82077.1| ATP-dependent RNA helicase [Bartonella schoenbuchensis R1]
          Length = 470

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 106/317 (33%), Gaps = 36/317 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++     LL +        +I  +   D      + + GF  P     R  +  
Sbjct: 134 TPGRLLDHFERGKLLLI------GTEILVIDEADR-----MLDMGFI-PDI--ERICKLT 179

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGI----IVEQIIRPTGLVDPPVE--IRSARTQVED 570
            +      T+  SAT      +  +      I  ++ + +       +  ++S     + 
Sbjct: 180 PF---TRQTLFFSATMAPEITKLTEQFLHSPICVEVTKASSTATTITQRLVKSGSKAWDK 236

Query: 571 ---VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
              + + I+    +    ++    K+   +L   L + N  V  +H ++    R+  + D
Sbjct: 237 RAVLRELIDNEGDELKNAIIFCNRKKDISELFRSLTKYNFSVGALHGDMDQHSRMNTLAD 296

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            +  K  +LV  ++   GLDIP+   V   D             I  IGR  R   S   
Sbjct: 297 FKDNKLTLLVASDVAARGLDIPDVSHVFNYDV-----PTHAEDYIHRIGRTGRAKRSGKA 351

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ-SVKEKIMEVIDPILLEDAATTNI 746
               T     Q  I    +  ++++E    +      S+ ++  +  D I+   +A  + 
Sbjct: 352 FTIVTHDD--QKYISAIEKISKEKIEW--LNGDLSTLSISDQTNDSNDSIVKTKSAKLSK 407

Query: 747 SIDAQQLSLSKKKGKAH 763
               ++ +   KK    
Sbjct: 408 KSTPKKHTAHTKKASKE 424


>gi|218248985|ref|YP_002374356.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 8801]
 gi|257062070|ref|YP_003139958.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
 gi|218169463|gb|ACK68200.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8801]
 gi|256592236|gb|ACV03123.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
          Length = 485

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 6/126 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
              ++ V TK+ A +LT  L E    V   H  +   +R  ++   R GK  ++V  ++ 
Sbjct: 243 ESAIIFVRTKQTAAELTCKLQEAGQSVDEYHGNLSQSQRERLVYRFREGKIKLVVATDIA 302

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D        +  + I  IGR  R   +   I   + I + +   I
Sbjct: 303 ARGLDVENLSHVINYD-----LPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRMIKQI 357

Query: 702 DETTRR 707
           +   R+
Sbjct: 358 ERKLRQ 363


>gi|123455589|ref|XP_001315537.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121898217|gb|EAY03314.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 598

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 70/183 (38%), Gaps = 12/183 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE--QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA-- 579
            T++ SAT      +     +V+   +I     +     I+   T+ E+           
Sbjct: 305 QTMMFSATWPKEIQQLAADFLVDPVHMIIGNKDLTTNSNIKQVITKCEEFEKLSKCLEVL 364

Query: 580 --QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              +  +I++   TKR  +DL E L  +  +   +H +    +R  ++   R  K  +LV
Sbjct: 365 NEHKDDKIIIFTKTKRTTDDLQENLNMKGFQAYSLHGDKAQNQRDFVLGKFRSCKKGILV 424

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKS 696
             ++   GLD+ +  +V   D     F     + +  IGR AR N     + +     K+
Sbjct: 425 ATDVAARGLDVNDIDIVINYD-----FPGDIETYVHRIGRTARGNKEGLAVTFFTDENKN 479

Query: 697 IQL 699
           +  
Sbjct: 480 MSR 482


>gi|2745894|gb|AAB94769.1| putative RNA helicase RCK [Mus musculus]
          Length = 453

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 79/235 (33%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D             L    + + L +     L     + S
Sbjct: 217 MIVLDEADKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 265

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ + +    V    ++           + +    Q    I +  
Sbjct: 266 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFC 316

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D   G    LV  +L   G+DI 
Sbjct: 317 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFENGLCRNLVCTDLFTRGIDIQ 376

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  +GR+ R  +  + +   T        +I+E
Sbjct: 377 AVNVVINFDFPKL-----AETYLHRVGRSGRFGHLGLAINLITYDDRFNLKSIEE 426


>gi|119946809|ref|YP_944489.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119865413|gb|ABM04890.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 581

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 78/204 (38%), Gaps = 35/204 (17%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP---PVEIRSARTQVEDVYDEINLA 578
           +  T + SAT            + +QI R T         V+I+S  + VE++  +  + 
Sbjct: 188 KRQTALFSAT------------MPDQIKRITKRYMNSPTEVKIQSKTSTVENIEQKCWIV 235

Query: 579 A--------------QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
                          ++   +++   TK    +L E L  R  R   ++ ++    R   
Sbjct: 236 RGVNKLDALTRMLETEEYDGVIIFARTKTATVELAERLEARGYRSAALNGDMNQQVRERT 295

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           I  L+ G  D+LV  ++   GLD+    LV   D           S +  IGR  R    
Sbjct: 296 IARLKSGGLDILVATDVAARGLDVERLSLVVNYD-----IPTDTESYVHRIGRTGRAGRK 350

Query: 685 -KVILYADTITKSIQLAIDETTRR 707
            K IL+A    + +  AI+  TR+
Sbjct: 351 GKAILFAAPRERRLLKAIERATRQ 374


>gi|17977678|ref|NP_524220.1| abstrakt [Drosophila melanogaster]
 gi|12643521|sp|Q9V3C0|DDX41_DROME RecName: Full=ATP-dependent RNA helicase abstrakt; Short=DEAD box
           protein abstrakt
 gi|6635811|gb|AAF19985.1|AF212866_1 abstrakt protein [Drosophila melanogaster]
 gi|7296891|gb|AAF52165.1| abstrakt [Drosophila melanogaster]
 gi|15291815|gb|AAK93176.1| LD28839p [Drosophila melanogaster]
 gi|220945834|gb|ACL85460.1| abs-PA [synthetic construct]
 gi|220955594|gb|ACL90340.1| abs-PA [synthetic construct]
          Length = 619

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 72/202 (35%), Gaps = 21/202 (10%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
                 + + GF      D R + F  +   R  T++ SAT         +  +V+ +  
Sbjct: 339 MDEADRMIDMGFE----EDVRTI-FSFFKGQR-QTLLFSATMPKKIQNFARSALVKPVTI 392

Query: 551 PTGL-------VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
             G        V   VE      +V  + D +   A     +L+    K+  + + EYL 
Sbjct: 393 NVGRAGAASMNVTQQVEYVKQEAKVVYLLDCLQKTAPP---VLIFAEKKQDVDCIHEYLL 449

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            + +    +H      ER   +   R+GK DVLV  ++  +GLD P    V   D     
Sbjct: 450 LKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYD----- 504

Query: 664 FLRSKTSLIQTIGRAARNVNSK 685
                 + +  IGR  R+    
Sbjct: 505 MPDDIENYVHRIGRTGRSNTKG 526


>gi|254830000|ref|ZP_05234655.1| hypothetical protein Lmon1_01525 [Listeria monocytogenes 10403S]
          Length = 470

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 85/252 (33%), Gaps = 31/252 (12%)

Query: 521 LRPTTIVVSATPGSWELEQ--CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
            +   +  SAT    E++    +      +I        P+       Q ++    +   
Sbjct: 171 KQRQNLFFSAT-MPEEMQDLIKRYQDNPMVIEMASEKTNPI--FHVEMQTDNKEKTLKDV 227

Query: 579 --AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +     ++   TK   ++LT+ L   +++   +H  ++  +R   + D + GK   L
Sbjct: 228 LITENPDSAIIFCNTKNQVDELTDLL---DVKASKIHGGLRQEDRFRAMDDFKSGKSRFL 284

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITK 695
           +  ++   G+D+    LV   D   E     K + +  IGR  R   S K I +  T   
Sbjct: 285 IATDVAGRGIDVDNVSLVINYDLPIE-----KENYVHRIGRTGRAGKSGKAISFVKTNEN 339

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
            +   I+E                I     K++   VI+    E+A              
Sbjct: 340 PLLRDIEEM-----------LDVTIE----KKRKPTVIEVKANEEAFHKKQQKRPTIKKA 384

Query: 756 SKKKGKAHLKSL 767
             +K   ++  L
Sbjct: 385 RGEKLNKNIMKL 396


>gi|87121447|ref|ZP_01077336.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
           sp. MED121]
 gi|86163290|gb|EAQ64566.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
           sp. MED121]
          Length = 418

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 97/286 (33%), Gaps = 57/286 (19%)

Query: 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ 539
           + Q+  +   +  R     + GF +      + L        +  T+  SAT      + 
Sbjct: 149 VSQLKTLVLDEADRM---LDMGFIIDIQRILKRLP------QQKQTLFFSATFDDAIFKL 199

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL-----------RILLT 588
            + ++ + ++      +   E      QVE ++  ++   + GL           ++L+ 
Sbjct: 200 SKTLLQDPVLIEVDQRNTSAE------QVEQIFYAVDKEKKSGLISYLIGSKNWQQVLIF 253

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
             TK  A+ L + + +  I  + +H +     R  ++   + G+   LV  ++   GLDI
Sbjct: 254 TRTKEGADRLAKEMKKDGIETQAIHGDKSQGARDRVLAAFKAGELRALVATDVAARGLDI 313

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT-----ITKSIQLAIDE 703
                V   +        +    I  IGR  R   S + +   +     + K I+  +D 
Sbjct: 314 EALSYVINHE-----LPYNAEDYIHRIGRTGRAGQSGLAVSLLSEKENYLLKDIEKLLDT 368

Query: 704 ---------------------TTRRREKQLEHNKKHNINPQSVKEK 728
                                  R    + + N+   I P++  ++
Sbjct: 369 PLASQWYPGFEPDLDKPESKSNKRPLSNKEKRNQALGIKPKAKNKR 414


>gi|307104599|gb|EFN52852.1| hypothetical protein CHLNCDRAFT_26393 [Chlorella variabilis]
          Length = 313

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 65/206 (31%), Gaps = 20/206 (9%)

Query: 491 FHRKATLAEYGF------RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII 544
           F     L E GF       L S   +R      ++   P  +   A  G  E E  +   
Sbjct: 117 FDEADRLFEMGFAEQLRQILASVGPSRQTLL--FSATMPKALAEFARAGLKEPELVRLDA 174

Query: 545 VEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
             +I     L    V  E + A      +   +          ++   T+   E L   L
Sbjct: 175 DTKISPDLALAFFTVRWEDKPAA-----LLYLLREVVAADQPTIIFASTRHHVEFLAGLL 229

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +   Y+H  +    R   I   R G+  +LV  ++   GLDIP    V   D    
Sbjct: 230 AQDGLEAAYVHGNMDQAARKIHIAKFRAGRVRLLVVTDVAARGLDIPLLDNVVHYD---- 285

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVIL 688
            F       +   GRAAR   S    
Sbjct: 286 -FPPKPKLFVHRSGRAARAGRSGTSY 310


>gi|302552921|ref|ZP_07305263.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302470539|gb|EFL33632.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 505

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 21/158 (13%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D Y      A +  R+++ + TK   + LT++L    +R   +H      +R   +   +
Sbjct: 294 DKYRTTTEIAARDGRVIMFLDTKHAVDRLTKHLLNSGVRAAGLHGGKSQPQRTRTLAQFK 353

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ +    LV  +D   +         +   GR AR   S  ++ 
Sbjct: 354 TGHVTVLVATNVAARGIHVDNLDLVVNVDPPGD-----HKDYLHRGGRTARAGESGSVVT 408

Query: 690 ADTITKS--IQLAIDETTRRREKQLEHNKKHNINPQSV 725
             T  +   +   +                  I P++ 
Sbjct: 409 LVTPDQRRGMNRLM--------------AAAGITPRTT 432


>gi|258543003|ref|YP_003188436.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634081|dbj|BAI00057.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637141|dbj|BAI03110.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640193|dbj|BAI06155.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643250|dbj|BAI09205.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646305|dbj|BAI12253.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649358|dbj|BAI15299.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652344|dbj|BAI18278.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655402|dbj|BAI21329.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-12]
          Length = 400

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 103/303 (33%), Gaps = 33/303 (10%)

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNP-GEPPPT 460
           EL +++ ++ +   L E+++ +++    L  L         E++    TGR      P  
Sbjct: 82  ELVLQVEKVFRT-CLGESKKGQKQTPVTLVPLFGGSDRAEQEHFLAQATGRRILIATPGR 140

Query: 461 LFEY-------IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
           L ++       + E   L +DE                    TL  Y   LPS      L
Sbjct: 141 LLDFVSNRICDLSECGYLVLDEGDRL------FSPEFQEDTETLLSY---LPSMRQTLVL 191

Query: 514 RFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
              +   L+ T + +   P    +EQ         IR   L   P       TQ      
Sbjct: 192 SATQPESLKSTLLNLLHKPVEISIEQAPQ--KRGPIRQAALFLDP-------TQKPGFIK 242

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           E    A + +R ++ V TK  A+ L   L +  +    +H ++   +R   +     G+ 
Sbjct: 243 EFFSRAPK-MRSIVFVRTKAEADQLAALLKKARLAAAPLHGDIAQDKRTSTVASFESGRL 301

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLD+P    V   D           + +  IGR  R       L   T+
Sbjct: 302 FILVATDVAARGLDVPSVKQVINYDV-----PDQPETYLHRIGRTGRGGEKGSALTLCTM 356

Query: 694 TKS 696
              
Sbjct: 357 DDR 359


>gi|190149870|ref|YP_001968395.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307249764|ref|ZP_07531742.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307263195|ref|ZP_07544815.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915001|gb|ACE61253.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306858179|gb|EFM90257.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306871412|gb|EFN03136.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 406

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   E++  YL     RV  +  ++   +R+ ++     G+ D+LV  ++  
Sbjct: 255 RCMIFANTKHKCEEIWNYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLDILVATDVAA 314

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAID 702
            GL IPE   V   D             +  IGR  R   S   I +A         AI+
Sbjct: 315 RGLHIPEVTHVFNYD-----LPDDCEDYVHRIGRTGRAGESGHSISFACERYAVNLPAIE 369


>gi|6320041|ref|NP_010121.1| Dhh1p [Saccharomyces cerevisiae S288c]
 gi|729329|sp|P39517|DHH1_YEAST RecName: Full=ATP-dependent RNA helicase DHH1; AltName:
           Full=DExD/H-box helicase 1
 gi|160380644|sp|A6ZXG9|DHH1_YEAS7 RecName: Full=ATP-dependent RNA helicase DHH1; AltName:
           Full=DExD/H-box helicase 1
 gi|4353|emb|CAA46853.1| RNA-helicase of the DEAD-BOX family [Saccharomyces cerevisiae]
 gi|1061279|emb|CAA91586.1| putative RNA helicase [Saccharomyces cerevisiae]
 gi|1431254|emb|CAA98734.1| DHH1 [Saccharomyces cerevisiae]
 gi|151941843|gb|EDN60199.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|190405159|gb|EDV08426.1| hypothetical protein SCRG_00654 [Saccharomyces cerevisiae RM11-1a]
 gi|285810876|tpg|DAA11700.1| TPA: Dhh1p [Saccharomyces cerevisiae S288c]
 gi|323309886|gb|EGA63088.1| Dhh1p [Saccharomyces cerevisiae FostersO]
          Length = 506

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 16/182 (8%)

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           LP    ++ L F     L     +V      +E+   + + ++ I +        VE R 
Sbjct: 216 LPP--THQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQ----YYAFVEERQ 269

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
               +  ++ ++ +      + ++   +    E L + + +      Y H+ +K  ER +
Sbjct: 270 KLHCLNTLFSKLQI-----NQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNK 324

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  + R GK   LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 325 VFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD-----FPKTAETYLHRIGRSGRFGH 379

Query: 684 SK 685
             
Sbjct: 380 LG 381


>gi|320037892|gb|EFW19828.1| ATP-dependent RNA helicase dbp3 [Coccidioides posadasii str.
           Silveira]
          Length = 512

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 21/202 (10%)

Query: 496 TLAEYGFR---------LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
            + + GF          +PS    + + F     +    +  S T           I   
Sbjct: 253 RMLDKGFEQDIQDIVKGIPSTQKRQTIMFTATWPIGVRNLAASFTKNP----VTVTIGDS 308

Query: 547 QIIRPTGLVDPPVEI---RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
             IR    +   VE+       +++ ++       A+   RIL+  L K+ A  +  ++ 
Sbjct: 309 SDIRANKRIKQIVEVLQPYEKDSRLLELLRRYQDGAKNNHRILVFCLYKKEAMRVERFIG 368

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            +  +V  +H ++   ER   +   + G   +LV  ++   GLDIP   LV  +      
Sbjct: 369 SKGFKVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIPAVKLVLNV-----T 423

Query: 664 FLRSKTSLIQTIGRAARNVNSK 685
           F  +    +  IGR  R     
Sbjct: 424 FPLTIEDYVHRIGRTGRAGAEG 445


>gi|319898057|ref|YP_004136254.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
 gi|317433563|emb|CBY81947.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
          Length = 439

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 101/306 (33%), Gaps = 55/306 (17%)

Query: 470 LLFVDESHVTIPQISGMYRG-----DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +L  DE+   +    G            RK TL      L S      L  +    L   
Sbjct: 153 MLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL------LFSATLEGELLVDFAERLLND 206

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + V A P   E ++                       S   +++ +   I    ++  R
Sbjct: 207 PVKVDAEPSRRERKKINQWYYHAD--------------SNEHKIKLLARFIE--TEKVTR 250

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V  +    +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++   
Sbjct: 251 GIVFVRRREDVRELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+DI +   V   D        S  + +  IGR AR       +            + + 
Sbjct: 311 GIDIDDVSHVMNFD-----LPYSADTYLHRIGRTARAGKKGTAVSFVEAHD--YKLLGKI 363

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
            R  E+ L+      + P++                        D +  S+SKK+ KA +
Sbjct: 364 KRYTEEILKARILAGLEPRT--------------------KPPKDGEVKSVSKKQ-KARI 402

Query: 765 KSLRKQ 770
           K  R+ 
Sbjct: 403 KEKRED 408


>gi|301169122|emb|CBW28719.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810]
          Length = 439

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 88/260 (33%), Gaps = 34/260 (13%)

Query: 470 LLFVDESHVTIPQISGMYRG-----DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +L  DE+   +    G            RK TL      L S      L  +    L   
Sbjct: 153 MLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL------LFSATLEGELLVDFAERLLND 206

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + V A P   E ++                       S   +++ +   I    ++  R
Sbjct: 207 PVKVDAEPSRRERKKINQWYYHAD--------------SNEHKIKLLARFIE--TEEVTR 250

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++   
Sbjct: 251 GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+DI +   V   D        S  + +  IGR AR       +            + + 
Sbjct: 311 GIDIDDVSHVMNFD-----LPYSADTYLHRIGRTARAGKKGTAVSFVEAHD--YKLLGKI 363

Query: 705 TRRREKQLEHNKKHNINPQS 724
            R  E+ L+      + P++
Sbjct: 364 KRYTEEILKARILAGLEPRT 383


>gi|148974049|ref|ZP_01811582.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
           bacterium SWAT-3]
 gi|145965746|gb|EDK30994.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
           bacterium SWAT-3]
          Length = 443

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 64/172 (37%), Gaps = 12/172 (6%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR-----TQVEDVYDEI 575
            R  T++ SAT    E+      +++   R +  V     +   +       ++     +
Sbjct: 178 RRRQTLMFSATLDHAEVNDIANEMLDAPKRISVGVSNEQHLDITQKFYLCDHLDHKEAIL 237

Query: 576 NLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           +   ++    ++++   T+   + LT+ L E+ ++   +   +   +R  I+       +
Sbjct: 238 DRVLEEAEYRQVMIFTATRADTDRLTDKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVY 297

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV  ++   G+DIP    V   D  K          +  +GR  R  N  
Sbjct: 298 KILVTTDVASRGIDIPNVSHVINFDMPK-----HTEEYVHRVGRTGRAGNKG 344


>gi|307245417|ref|ZP_07527505.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254371|ref|ZP_07536209.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258830|ref|ZP_07540562.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853758|gb|EFM85975.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862670|gb|EFM94626.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867181|gb|EFM99037.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 412

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK   E++  YL     RV  +  ++   +R+ ++     G+ D+LV  ++  
Sbjct: 255 RCMIFANTKHKCEEIWNYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLDILVATDVAA 314

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAID 702
            GL IPE   V   D             +  IGR  R   S   I +A         AI+
Sbjct: 315 RGLHIPEVTHVFNYD-----LPDDCEDYVHRIGRTGRAGESGHSISFACERYAVNLPAIE 369


>gi|302786394|ref|XP_002974968.1| hypothetical protein SELMODRAFT_232454 [Selaginella moellendorffii]
 gi|300157127|gb|EFJ23753.1| hypothetical protein SELMODRAFT_232454 [Selaginella moellendorffii]
          Length = 408

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 106/307 (34%), Gaps = 43/307 (14%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           FVDE    + QI+ +   +  R     + GF  P+         +E       TI++SAT
Sbjct: 126 FVDEGVCKLDQITYLVLDEADRM---LDLGFE-PAVRAIVSHIPQE-----RQTIMLSAT 176

Query: 532 ------PGSWELEQCQGIIV----EQIIRPTGLVDPPVEI---RSARTQVEDVYDEINLA 578
                   + E  Q    +      + +     V   VE+   +S   +++++   +   
Sbjct: 177 WPTSVQKLAQEFIQDASPVKITVGSEDLSANHDVTQIVEVLDDKSRDRRLQELL-RLYHK 235

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++  R+L+ VL K+ A  +  +L ++  +V  +H +     R + +   + G   +L+ 
Sbjct: 236 TKRN-RVLVFVLYKKEAVRVENFLQKQGWKVTGIHGDKSQQARNQALSAFKDGSHPLLIA 294

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDIP+   V         F  +    +  IGR  R           T     +
Sbjct: 295 TDVAARGLDIPDVEFVINYS-----FPLTTEDYVHRIGRTGRAGKKGTAHTFFTTADKAR 349

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSV------KEKIMEVIDPILLEDAATTNISIDAQQ 752
                   R  +Q        I P+ +       +K    +      + A          
Sbjct: 350 AGELVNILREARQ--------IVPEELLKFGAHVKKKESKLYGAHFRELAADAPKAQKIT 401

Query: 753 LSLSKKK 759
             +S ++
Sbjct: 402 FDVSDEE 408


>gi|156540308|ref|XP_001599155.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 488

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 87/212 (41%), Gaps = 12/212 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQ-IIRPTGLVDPPVEIRSARTQVEDVYD------EIN 576
             +  SAT  +  +E  + I+    IIR     +    I+    +  ++ +       I 
Sbjct: 278 QMMFFSATYDTEVMEFAELIVKNATIIRLQKEEESLENIKQYYVKCGNIEEKYQAITNIY 337

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G   ++   TK+ A  L++ + +    V  +  ++   +RI ++   R G   VL
Sbjct: 338 GVITIGQ-AIIFCQTKKTACWLSDKMTQDGHSVAILSGDLTVEDRISVLDRFREGLEKVL 396

Query: 637 VGINLLREGLDIPECGLVAILDADKE-GFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  N+L  G+D+ +  +V   D   +        + +  IGR  R  NS V +     T+
Sbjct: 397 ITTNVLARGIDVEQVTIVVNFDLPVDQNQQADYETYLHRIGRTGRFGNSGVAINLVDSTR 456

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           S+Q  I +   R  K+  ++     +P ++++
Sbjct: 457 SMQ--ICQDIERHFKRTIYHLDAE-DPDAIEK 485


>gi|126736040|ref|ZP_01751784.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
 gi|126714597|gb|EBA11464.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
          Length = 484

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 97/324 (29%), Gaps = 63/324 (19%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++    L+  D       +I  +   D      + + GF         P   E
Sbjct: 130 TPGRLLDHLERGKLILTD------VKIMVVDEADR-----MLDMGFI--------PDIEE 170

Query: 517 EWNC--LRPTTIVVSATPGSWELEQ---------CQGIIVEQIIRPTGLVDPPVEIR--- 562
            +        T+  SAT    E+E+          +  +       T +    V  +   
Sbjct: 171 IFKRTPFTRQTLFFSATMAP-EIERITNTFLSNPAKIEVARAATTNTNIKQGVVMFKGSA 229

Query: 563 ----SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
                +  + E +   I+   +     ++    K   + + + L +   +   +H ++  
Sbjct: 230 KPKEPSE-KRELLRKLIDAEGEACTNAIIFCNRKSDVDIVAKSLNKYGYQAAPIHGDLDQ 288

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
             R + +   R  +  +LV  ++   GLDIP    V   D             +  IGR 
Sbjct: 289 SHRTKTLDKFRDNELRILVASDVAARGLDIPAVTHVFNFDV-----PSHAEDYVHRIGRT 343

Query: 679 ARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILL 738
            R   S   +         +  +++  R                  VKE I  +  P   
Sbjct: 344 GRAGRSGTAIMICVPRD--EKNLEDVER-----------------LVKETIPRLDAPGGK 384

Query: 739 EDAATTNISIDAQQLSLSKKKGKA 762
              AT       ++   ++ + K 
Sbjct: 385 AAPATAEPEKAEEKPKRTRSRRKK 408


>gi|316976229|gb|EFV59556.1| ATP-dependent RNA helicase DED1 [Trichinella spiralis]
          Length = 384

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 69/175 (39%), Gaps = 9/175 (5%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
            TI+ SAT P +         + E    P  +    +       +V  + + +N  A++G
Sbjct: 174 QTIMFSATFPTNIRKNHAFLSVGESGTIPASIKQEFIWTNE-NDKVTTLVNLLNCQAREG 232

Query: 583 LRILLTVLTKRMAEDLTEYLYER-NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           L +L+ V TK  A  LT +L  +   +   +H  +    R   +     G+  +L+  ++
Sbjct: 233 L-VLIFVETKNEANRLTYFLNNKSGHQAVTVHGNLSQRARERNLDAFSSGQPRLLIATSV 291

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
              GLDIP  G V   +        +    +  +GR  R+ NS + +       +
Sbjct: 292 AARGLDIPNVGHVINYN-----LPNNVEEYVHRVGRTGRSGNSGIAISLCNEKDA 341


>gi|301755882|ref|XP_002913779.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ailuropoda
           melanoleuca]
          Length = 739

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 39/256 (15%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 322 PQTLLFSATCPPWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 381

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 382 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 440

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 441 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 495

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 496 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 542

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 543 AVDFFRPSAQRLIEEK 558


>gi|300120302|emb|CBK19856.2| unnamed protein product [Blastocystis hominis]
          Length = 563

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A  L   L    + V  +HS++  L R   I   R G+  VL+  +LL  
Sbjct: 371 MLVFVQSKDRARQLYTELAYDRVNVDVIHSDLSNLARTAAINRFRTGETWVLIATDLLGR 430

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAI 701
           GLD      V   D     F +S    I  IGR  R     K I +     K +  +I
Sbjct: 431 GLDFLGLNTVVNYD-----FPQSGVDYIHRIGRTGRAGRKGKAITFFTEEDKPMLRSI 483


>gi|291406357|ref|XP_002719521.1| PREDICTED: DEAD box polypeptide 42 protein [Oryctolagus cuniculus]
          Length = 935

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 433 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 492

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 493 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 606

Query: 696 S 696
           S
Sbjct: 607 S 607


>gi|52551335|gb|AAU84666.1| zinc responsive protein Zd10A [Rattus norvegicus]
          Length = 482

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 272 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNREEKFQ 325

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 326 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 385

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 386 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 444

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 445 MVDSKHSMNIL----NR---IQEHFNKK 465


>gi|71000385|ref|XP_754887.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus Af293]
 gi|66852524|gb|EAL92849.1| DEAD/DEAH box RNA helicase, putative [Aspergillus fumigatus Af293]
 gi|159127900|gb|EDP53015.1| DEAD/DEAH box RNA helicase, putative [Aspergillus fumigatus A1163]
          Length = 587

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 1/113 (0%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TK  A+ L ++LY   +    +HS+    ER + +R  R  +  ++V   +  
Sbjct: 398 RTLIFVNTKIQADFLDDFLYNMGLPSTSIHSDRTQREREDALRSFRSARCPIMVATGVSA 457

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            GLDI     V   D          T  I  IGR AR  N  +         S
Sbjct: 458 RGLDIKNVMHVVNFDLPSAAHG-GITEYIHRIGRTARIGNEGLATSFYNDKNS 509


>gi|326498121|dbj|BAJ94923.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326527983|dbj|BAJ89043.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 495

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 78/238 (32%), Gaps = 32/238 (13%)

Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT---PGSWELEQCQGIIV 545
                   L  Y   LPS       +   ++   P T+        P  + +     + +
Sbjct: 279 EFQPSVEQLIRY---LPSSR-----QILMFSATFPVTVKAFKDKYLPKPYVINLMDELTL 330

Query: 546 EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           + I +    V+   ++           + +    Q    I +   +    E L + + E 
Sbjct: 331 KGITQFYAFVEERQKVH--------CLNTLFSKLQINQSI-IFCNSVNRVELLAKKITEL 381

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
                Y+H+++    R  +  D R G    LV  +L   G+DI    +V   D     F 
Sbjct: 382 GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFD-----FP 436

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           ++  + +  +GR+ R  +  + +   T      L        R +Q    +   I PQ
Sbjct: 437 KNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNL-------YRIEQELGTEIKPIPPQ 487


>gi|297787958|ref|XP_002862173.1| hypothetical protein ARALYDRAFT_333427 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297307387|gb|EFH38431.1| hypothetical protein ARALYDRAFT_333427 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 283

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +G + ++   TKR A+ L+ Y   R+ +   +H ++   +R   +   R G F +LV  
Sbjct: 9   AKGGKCIVFTQTKRDADRLS-YALARSFKCEALHGDISQSQRERTLAGFRDGHFKILVAT 67

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   GLD+P   L+            +  + +   GR  R       +   +  +S  +
Sbjct: 68  DVAARGLDVPNVDLII-----HYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAV 122

Query: 700 AIDE 703
            I E
Sbjct: 123 KIIE 126


>gi|282858160|ref|ZP_06267355.1| transcription-repair-coupling factor [Pyramidobacter piscolens
           W5455]
 gi|282584082|gb|EFB89455.1| transcription-repair-coupling factor [Pyramidobacter piscolens
           W5455]
          Length = 990

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 71/195 (36%), Gaps = 20/195 (10%)

Query: 195 PAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQ 254
             +V+ P +  A  L S+ K      +                 P  D+  EK  S +  
Sbjct: 6   KILVLVPTRQEALALDSDLKVLEVGESRLL------------EEPPLDS--EKLRSGDSF 51

Query: 255 IDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK 314
           +   R       L     ++V++      + +   + +  + L  G  + +  L S L +
Sbjct: 52  LR--RGHTLSGWLNAKSGMLVATPGA---LVTPFRFGKTGLTLAAGKRLGRDTLTSWLAE 106

Query: 315 QQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNV 374
             Y+R ++    G F V G  ++ F    E    RV  F  D+E I  F P + +  +N+
Sbjct: 107 NGYRRAELVWQPGEFAVRGALVDFFDP-SEKAPLRVEFFDEDVESIRFFQPRSQRSFQNL 165

Query: 375 ETIKIYANSHYVTPR 389
               + + +H    +
Sbjct: 166 PHFIVRSVNHSEDEQ 180



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 65/176 (36%), Gaps = 9/176 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VYDEINLAAQQG 582
            + +SATP    L      I +  +  T       E+ +  ++ +    +D +     +G
Sbjct: 618 VLSLSATPIPRSLSMAMRGIRDISVIATS-PRGRGEVFTVTSRWDPSLAHDAVLRELMRG 676

Query: 583 LRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            ++          E +   L  R    R    H ++   E  + + +   GK ++LV   
Sbjct: 677 GQVYYLHNRIDDIEQIAARLANRFPGHRTAVAHGQMGERELEKTMNEFYDGKIEILVCTT 736

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           ++  GLD+P    + + D  + G  +    + Q  GR  R   +   L+     +S
Sbjct: 737 IIESGLDVPRANTLIVDDVRRLGLAQ----MHQIRGRIGRRSENAYALFFYESEES 788


>gi|145345534|ref|XP_001417262.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577489|gb|ABO95555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 654

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 16/184 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIV----------EQIIRPTGLVDPPVEIRSARTQVEDVYD 573
            T++ SAT   W  +  +  +           +Q  + +G V   +       +V+ V D
Sbjct: 268 QTLLFSATLPPWVKDIAKRFLKPDYATVDLVGDQKQKASGAVQHMLLPCQWSDRVDLVCD 327

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLY-ERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            I   A  G R+++   TKR   +L + L  E     + +H +V   +R  ++   R  K
Sbjct: 328 VIRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVSQGQREVVLAGFREDK 387

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  ++   GLDI    LV   +  K+       + I   GR  R   + + +   T
Sbjct: 388 FQVLVATDVAARGLDITGVELVIQCEPPKD-----AETYIHRSGRTGRAGATGISVTLCT 442

Query: 693 ITKS 696
               
Sbjct: 443 PRSE 446


>gi|73965191|ref|XP_861211.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           isoform 3 [Canis familiaris]
          Length = 533

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 270 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 329

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 330 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 388

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 389 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 443

Query: 696 S 696
           S
Sbjct: 444 S 444


>gi|241668567|ref|ZP_04756145.1| ATP-dependent RNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877101|ref|ZP_05249811.1| ATP-dependent RNA helicase rhlE [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843122|gb|EET21536.1| ATP-dependent RNA helicase rhlE [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 445

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 103/326 (31%), Gaps = 41/326 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   +++L            ++     +  R     + GF       N   R  
Sbjct: 130 TPGRLLDLYSQNAL--------KFDSLNTFVLDEADRM---LDMGFI------NDLKRIH 172

Query: 517 EWNCLRPTTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           +    +  T++ SAT            L+  Q +  + +      +   +      T++ 
Sbjct: 173 KLLPKKLQTLMFSATFSPEITSLANEFLDNPQSVSADVVNTTVKKITQKIYTLDKSTKIN 232

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   I    Q   ++L+   TK  A  ++E L    I    +H       R + + D +
Sbjct: 233 ALISLIKD--QDLHQVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFK 290

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
               +VLV  ++   G+DI +   V  LD             +  IGR  R       I 
Sbjct: 291 SKDINVLVATDIAARGIDIAQLPCVINLD-----LPNVAEDYVHRIGRTGRAGQDGLAIS 345

Query: 689 YADTITKSIQLAIDETTRR---REKQLEHNKKHN--INP---QSVKEKIMEVIDPILLED 740
                       I+        RE+       HN  I     ++  +KI EV   I  + 
Sbjct: 346 LVSADEVESLSNIEHLIGHLLPREELEGFEATHNVPITSMSRKTKAKKIDEV-KIIATKR 404

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS 766
           A   N +   ++ S   K     +K 
Sbjct: 405 ANKNNKNTSQKKSSNHNKDFAKKIKQ 430


>gi|260945084|ref|XP_002616840.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238850489|gb|EEQ39953.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 517

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 103/319 (32%), Gaps = 51/319 (15%)

Query: 465 IPEDSLLFVDESHVTIP------QISGMYRGDFHRKATLA--EYGFRLPSCMDNRPLRFE 516
           + +D +   D  HV +        ++     DF         E    L     N   +  
Sbjct: 138 LKDDIMRLHDPVHVLVGTPGRVLDLASRNLADFSECPLFIMDEADKMLSREFKNVIEQIL 197

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            +      +++ SAT                +E+     ++ E  +R        VE   
Sbjct: 198 TFFPEGRQSLLFSATFPYAVKSFMDKHLTKPYEIN----LMDELTLRGISQFYAFVE--- 250

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q     + +    Q    I +   +    E L + + E      Y H+++    R +
Sbjct: 251 -EKQKLHCLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNK 308

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  + R GK   LV  +LL  G+D+    +V   D     F ++  + +  IGR+ R  +
Sbjct: 309 VFHEFRQGKVRNLVCSDLLTRGIDVQAVNVVINFD-----FPKTAETYLHRIGRSGRFGH 363

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743
             + +            +    R    ++E      INP      I  VID  L  +   
Sbjct: 364 LGLAINL----------MSWNDRYNLYKIEQELGTEINP------IPAVIDKSLYVNENE 407

Query: 744 TNISIDAQQLSLSKKKGKA 762
             I    +   L K K KA
Sbjct: 408 ETIPRPFKLEELPKGKEKA 426


>gi|256082050|ref|XP_002577276.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238662581|emb|CAZ33513.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 612

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+   TKR  + +  YLY   +R   +H +     R + +   R G  +VL+  ++  
Sbjct: 424 RVLVFCNTKREVDQIDNYLYSNGVRSTSIHGDKNQYSRAKSLDLFRKGTANVLIASSVAA 483

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            G+DIP    V  +     G        +  IGR  R   S 
Sbjct: 484 RGIDIPNVFAVINI-----GLPNELDDYVHRIGRTGRMGKSG 520


>gi|145634582|ref|ZP_01790291.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|229844418|ref|ZP_04464558.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 6P18H1]
 gi|145268127|gb|EDK08122.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|229812667|gb|EEP48356.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 6P18H1]
          Length = 439

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 88/260 (33%), Gaps = 34/260 (13%)

Query: 470 LLFVDESHVTIPQISGMYRG-----DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +L  DE+   +    G            RK TL      L S      L  +    L   
Sbjct: 153 MLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL------LFSATLEGELLVDFAERLLND 206

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + V A P   E ++                       S   +++ +   I    ++  R
Sbjct: 207 PVKVDAEPSRRERKKINQWYYHAD--------------SNEHKIKLLARFIE--TEEVTR 250

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++   
Sbjct: 251 GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+DI +   V   D        S  + +  IGR AR       +            + + 
Sbjct: 311 GIDIDDVSHVMNFD-----LPYSADTYLHRIGRTARAGKKGTAVSFVEAHD--YKLLGKI 363

Query: 705 TRRREKQLEHNKKHNINPQS 724
            R  E+ L+      + P++
Sbjct: 364 KRYTEEILKARILAGLEPRT 383


>gi|34498296|ref|NP_902511.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34104150|gb|AAQ60509.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 420

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 98/287 (34%), Gaps = 35/287 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L +         +D + + +  +  +   +  R   L + GF   L S +D  P  
Sbjct: 132 TPGRLLD--------LLDHNALRLSAVKTLVLDEADR---LLDLGFADELGSVLDRLP-- 178

Query: 515 FEEWNCLRPTTIVVSAT--PGSWEL-EQCQGIIVEQIIRPTGLVDPPVEIRSAR---TQV 568
                      ++ SAT  P    L E+     +   I       P +  R+      + 
Sbjct: 179 ------PARQNLLFSATFPPAVRALAEKLLKQPLRIDIEHAAATAPDIRQRAIEVDAGKR 232

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             +   +        + L+ V +++ A+ + + L    +    +H +    +R + + DL
Sbjct: 233 TLLLRHLLATRDWD-KALVFVASRQAADRVADKLRRNGVPAAALHGDCSQGQRGQALADL 291

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G+  VLV  ++   G+DI    LV   D       RS       IGR  R       +
Sbjct: 292 KSGRLRVLVATDVAARGIDIARLPLVVNYD-----LPRSPVDYTHRIGRTGRAGARGEAI 346

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
              +   +    + E  +R++ +L   +     P         + DP
Sbjct: 347 SFVSADCAAHFRLIE--KRQQLRLPRERIAGFEPTETAIAAASLTDP 391


>gi|296420816|ref|XP_002839964.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636172|emb|CAZ84155.1| unnamed protein product [Tuber melanosporum]
          Length = 593

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 5/113 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V  KR+A+ L +YLY   +    +H +    ER + I   R GK  +++   +  
Sbjct: 409 RTLIFVNHKRVADSLDDYLYNLKLPTTSIHGDRTQREREDAILAFRSGKCPIMIATAVAA 468

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            GLDI     V   D      +++    I  IGR AR  N  +       +  
Sbjct: 469 RGLDIKNVMHVINYD-----MVQNIDEYIHRIGRTARIGNRGLATSFYNSSNE 516


>gi|237785892|ref|YP_002906597.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758804|gb|ACR18054.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 823

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 6/123 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK+  E+L E L  R      ++ ++   +R   +  LR G+ D+LV  ++   
Sbjct: 396 MIMFARTKQNTEELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAAR 455

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+     + +  +I+ 
Sbjct: 456 GLDVERISHVVNYD-----IPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRLLRSIER 510

Query: 704 TTR 706
            T+
Sbjct: 511 ATK 513


>gi|113197617|gb|AAI21215.1| zinc responsive protein Zd10A [Xenopus (Silurana) tropicalis]
          Length = 479

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 73/194 (37%), Gaps = 20/194 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT G            E+I+    ++    E       ++  YD+     Q+  
Sbjct: 270 QMLLFSATFGD-----SVWAFAERIVPDPNIIKLKKE-ELTLDNIQQFYDKCENKEQKYS 323

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T+++A  L+ ++ E   +V  +  E+   +R E+I+  R G
Sbjct: 324 ALCNMYGIITIAQAIVFCQTRKIANWLSRHMLEDGHQVALLSGELSVCDRAEMIQRFREG 383

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLR-SKTSLIQTIGRAARNVNSKV-ILY 689
           K  VLV  N+   G+D+ +  +V   D            + +  IGR  R     + +  
Sbjct: 384 KDKVLVTTNVCARGIDVEQVSIVVNFDLPVNVDGSVDFETYLHRIGRTGRFGKKGIAVNL 443

Query: 690 ADTITKSIQLAIDE 703
            +     +   I+E
Sbjct: 444 IENSFVYMLKEIEE 457


>gi|62858607|ref|NP_001016345.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 [Xenopus (Silurana)
           tropicalis]
 gi|89266955|emb|CAJ81385.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 [Xenopus (Silurana)
           tropicalis]
          Length = 479

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 73/194 (37%), Gaps = 20/194 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT G            E+I+    ++    E       ++  YD+     Q+  
Sbjct: 270 QMLLFSATFGD-----SVWAFAERIVPDPNIIKLKKE-ELTLDNIQQFYDKCENKEQKYS 323

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T+++A  L+ ++ E   +V  +  E+   +R E+I+  R G
Sbjct: 324 ALCNMYGIITIAQAIVFCQTRKIANWLSRHMLEDGHQVALLSGELSVCDRAEMIQRFREG 383

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLR-SKTSLIQTIGRAARNVNSKV-ILY 689
           K  VLV  N+   G+D+ +  +V   D            + +  IGR  R     + +  
Sbjct: 384 KDKVLVTTNVCARGIDVEQVSIVVNFDLPVNVDGSVDFETYLHRIGRTGRFGKKGIAVNL 443

Query: 690 ADTITKSIQLAIDE 703
            +     +   I+E
Sbjct: 444 IENSFVYMLKEIEE 457


>gi|114046344|ref|YP_736894.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113887786|gb|ABI41837.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 549

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 74/197 (37%), Gaps = 9/197 (4%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT      E  +G++   VE  + P       V+  I       +       
Sbjct: 178 KRQNLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQL 237

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +  +   ++L+   TK  A  L + L +  I    +H       R + + D + G+  VL
Sbjct: 238 IKQEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD--TIT 694
           V  ++   GLDI +   V   D             I   GRA  +  +  ++ ++   + 
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLP--NVPEDYVHRIGRTGRAGASGQAVSLVSSEEFKLL 355

Query: 695 KSIQLAIDETTRRREKQ 711
           + I+  I+    R+E +
Sbjct: 356 RDIERLINRVLERQEIE 372


>gi|260428461|ref|ZP_05782440.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
 gi|260422953|gb|EEX16204.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
          Length = 430

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 64/188 (34%), Gaps = 15/188 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
            T++ SAT P   E E     +      Q+  P    D   +      + +D   ++   
Sbjct: 182 QTMLFSATMPKQME-ELSAAYLTNPRRVQVSPPGKAADKITQSVHFLGK-DDKPRKLREV 239

Query: 579 AQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +Q L    L+   TK  AE L + L         +H      +R   I+  R G  +VL
Sbjct: 240 LRQDLDALTLVFSRTKHGAERLMKGLVADGFNAASIHGNKSQGQRDRAIKAFRDGDINVL 299

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   G+DIP    V   D           + +  IGR AR       I +      
Sbjct: 300 VATDVAARGIDIPGVAYVVNYD-----LPEVPDNYVHRIGRTARAGREGEAIAFCAPDEA 354

Query: 696 SIQLAIDE 703
            +   I  
Sbjct: 355 DLLRQIQR 362


>gi|162456478|ref|YP_001618845.1| helicase-related protein [Sorangium cellulosum 'So ce 56']
 gi|161167060|emb|CAN98365.1| helicase-related protein [Sorangium cellulosum 'So ce 56']
          Length = 808

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G R L+   + R A    ++L  R +R+  +HS  ++  R E + DL  GK D L  ++L
Sbjct: 571 GERTLVFCCSIRHAHHACDFLAARGVRIAAVHSGPESAPREEALADLVAGKLDALCAVDL 630

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
             EG+D+P    V +L         S    +Q +GR  R  + K  L       + ++ I
Sbjct: 631 FNEGIDLPNVDRVVMLRPT-----ESPVVFLQQLGRGLRVADGKARLTVLDFVGNHRVFI 685

Query: 702 DE 703
           D 
Sbjct: 686 DR 687


>gi|163789335|ref|ZP_02183776.1| putative ATP-dependent RNA helicase [Flavobacteriales bacterium
           ALC-1]
 gi|159875403|gb|EDP69466.1| putative ATP-dependent RNA helicase [Flavobacteriales bacterium
           ALC-1]
          Length = 411

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 68/190 (35%), Gaps = 17/190 (8%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEI----RSARTQVEDVYDE 574
             T++ SAT   +++EQ    I++   R    PT  V   V         R ++E     
Sbjct: 181 KQTLLFSAT-IPYKIEQLASGILKDPERIDVTPTRSVAKDVSQILYYVPKRNKIELCLHL 239

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +    +    +L+   TK     L + L +    V  +H +    +R   +   + G   
Sbjct: 240 MRNTIKGN--VLIFRRTKFGVNKLEQTLLKNGYTVDSIHGDKNQSDRQTALNKFKNGYVK 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           VL+  ++   G+DI E   V   D           + +  IGR  R  N  K        
Sbjct: 298 VLIATDVAARGIDIDELDNVFNFD-----MPNQAETYVHRIGRTGRAGNIGKAYAMCSAD 352

Query: 694 TKSIQLAIDE 703
            KS    I++
Sbjct: 353 EKSYVKIIEQ 362


>gi|194467658|ref|ZP_03073645.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
 gi|194454694|gb|EDX43591.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
          Length = 497

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 93/262 (35%), Gaps = 17/262 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVE---IRSARTQVEDVYDEIN 576
            T++ SAT    E+++     +       I+   L    V+   +R+   +  D+   + 
Sbjct: 176 QTLLFSAT-MPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLI 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                 L  ++   TKR  ++L++ L  R      +H ++   +R +I+   +  + D+L
Sbjct: 235 DVQDPDL-TIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDIL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK- 695
           V  ++   GLDI     V   D           S +  IGR  R  +  V L   T  + 
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEM 348

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
                I++ TR R   L+           V     ++ + I  +       + +    + 
Sbjct: 349 DYLHEIEKLTRVRMLPLKPPTAEEAFKGQVASAFNDIDELIAQDSTDRYEEAAEKLLETH 408

Query: 756 SKKKGKAHLKSLRKQMHLAADN 777
           +     A L  L      AA  
Sbjct: 409 NATDLVAAL--LNNMTKEAASE 428


>gi|91794376|ref|YP_564027.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91716378|gb|ABE56304.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 496

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 72/201 (35%), Gaps = 17/201 (8%)

Query: 521 LRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEI 575
            +   ++ SAT      E  +G++   VE  + P       V   +     Q +     I
Sbjct: 177 KQRQNLMFSATFSDDIRELAKGLVNNPVEISVTPRNATANTVTQWVTPV-GQSDKTSVLI 235

Query: 576 NLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +L       ++L+   TK  A  + + L   +I+   +H       R + + D + GK  
Sbjct: 236 DLIKDNNWQQVLVFSRTKHGANRIAKNLEAASIKAAAIHGNKSQGARTKALADFKAGKVQ 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYAD- 691
           V+V  ++   G+DI +   V   D             +  IGR  R   S   V L AD 
Sbjct: 296 VMVATDIAARGIDIDQLPFVVNFD-----LPNVSEDYVHRIGRTGRAGASGQAVSLVADE 350

Query: 692 --TITKSIQLAIDETTRRREK 710
              +   I+  I     R+  
Sbjct: 351 EVKLLHDIERLIGRVIDRKAI 371


>gi|6118254|gb|AAF04040.1|AF187729_1 DEAD-box protein abstrakt [Drosophila melanogaster]
          Length = 614

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 72/202 (35%), Gaps = 21/202 (10%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
                 + + GF      D R + F  +   R  T++ SAT         +  +V+ +  
Sbjct: 334 MDEADRMIDMGFE----EDVRTI-FSFFKGQR-QTLLFSATMPKKIQNFARSALVKPVTI 387

Query: 551 PTGL-------VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
             G        V   VE      +V  + D +   A     +L+    K+  + + EYL 
Sbjct: 388 NVGRAGAASMNVTQQVEYVKQEAKVVYLLDCLQKTAPP---VLIFAEKKQDVDCIHEYLL 444

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            + +    +H      ER   +   R+GK DVLV  ++  +GLD P    V   D     
Sbjct: 445 LKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYD----- 499

Query: 664 FLRSKTSLIQTIGRAARNVNSK 685
                 + +  IGR  R+    
Sbjct: 500 MPDDIENYVHRIGRTGRSNTKG 521


>gi|327482576|gb|AEA85886.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri DSM 4166]
          Length = 460

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 74/186 (39%), Gaps = 10/186 (5%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGL-VDPPVEIRSARTQVEDVYDEINLAA 579
           +  T++ SAT P S E      +   Q +R   L  D  +E R      E   D +    
Sbjct: 178 KRQTLLFSATYPASIEQLAASFMRAPQQVRVESLHTDSQIEQRFYEIDPEQRLDAVARLL 237

Query: 580 Q--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              +    +    TK+  ++L EYL  + I    ++ +++  +R +++         VLV
Sbjct: 238 ASFRPESCVAFCFTKQQCQELVEYLNAKGISAAALNGDLEQRDRDQVLAMFANRSLSVLV 297

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI    +V  ++  ++  +      +  IGR  R  N  +        ++ 
Sbjct: 298 ATDVAARGLDIDALDMVINVELARDPEIH-----VHRIGRTGRAGNQGLAASLVAPAEAH 352

Query: 698 Q-LAID 702
           +  AI+
Sbjct: 353 RAQAIE 358


>gi|319937738|ref|ZP_08012141.1| ATP-dependent RNA helicase dbpA [Coprobacillus sp. 29_1]
 gi|319807173|gb|EFW03787.1| ATP-dependent RNA helicase dbpA [Coprobacillus sp. 29_1]
          Length = 479

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 18/188 (9%)

Query: 525 TIVVSATPGSWELEQ---------CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           T + SAT    E+++          Q  I +  +    +     E+ S   +   +   I
Sbjct: 177 TCLFSAT-LPEEIKKLAAKFMKNPVQVNIKQSQVINQKIETYAYEVMSYE-KAGFLLKLI 234

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               ++    ++   T+    ++ + LY+  I V  +H  +   +R+E + D RLGK   
Sbjct: 235 VH--EKPSSAIIFCETQERVNEVYDMLYKNGISVHKIHGGMLQTDRLENMNDFRLGKVQF 292

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+DI     V   D  +E       + I  IGR AR   + + +   +   
Sbjct: 293 LVATDVAARGIDIENISHVINYDLPRE-----AQNYIHRIGRTARIGKAGIAISLLSKDD 347

Query: 696 SIQLAIDE 703
             +    E
Sbjct: 348 YKRRMCIE 355


>gi|258620330|ref|ZP_05715368.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573]
 gi|258624701|ref|ZP_05719635.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603]
 gi|258582988|gb|EEW07803.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603]
 gi|258587209|gb|EEW11920.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573]
          Length = 416

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 90/257 (35%), Gaps = 35/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L EY        +D        I  +   +  R     + GF  P+   +R     
Sbjct: 132 TPGRLLEY--------IDAERFDCRAIEWLILDEADRM---LDMGFG-PTV--DRLSAEC 177

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL-VDPPVEIRSARTQVEDVYDEI 575
            W   R  T++ SAT    E    +G   + +  P  +  +PP   R   +Q     D++
Sbjct: 178 RW---RKQTLLFSAT---LEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWYHRADDM 231

Query: 576 NLAAQ--------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
               +        Q  R ++ + T+    DL   L +  I   ++  E+    R   I  
Sbjct: 232 PHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITR 291

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV- 686
            R G  ++L+  ++   G+D+P+   V   D       RS    +  IGR  R     + 
Sbjct: 292 FREGSVNILLATDVAARGIDVPDISHVINFD-----LPRSADVYLHRIGRTGRAGKKGIA 346

Query: 687 ILYADTITKSIQLAIDE 703
           I   +   + +   ++ 
Sbjct: 347 ISLVEAHDQPMMARVER 363


>gi|303316314|ref|XP_003068159.1| ATP-dependent RNA helicase DBP3, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240107840|gb|EER26014.1| ATP-dependent RNA helicase DBP3, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 512

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 21/202 (10%)

Query: 496 TLAEYGFR---------LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
            + + GF          +PS    + + F     +    +  S T           I   
Sbjct: 253 RMLDKGFEQDIQDIVKGIPSTQKRQTIMFTATWPIGVRNLAASFTKNP----VTVTIGDS 308

Query: 547 QIIRPTGLVDPPVEI---RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
             IR    +   VE+       +++ ++       A+   RIL+  L K+ A  +  ++ 
Sbjct: 309 SDIRANKRIKQIVEVLQPYEKDSRLLELLRRYQDGAKNNHRILVFCLYKKEAMRVERFIG 368

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            +  +V  +H ++   ER   +   + G   +LV  ++   GLDIP   LV  +      
Sbjct: 369 SKGFKVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIPAVKLVLNV-----T 423

Query: 664 FLRSKTSLIQTIGRAARNVNSK 685
           F  +    +  IGR  R     
Sbjct: 424 FPLTIEDYVHRIGRTGRAGAEG 445


>gi|194379194|dbj|BAG58148.1| unnamed protein product [Homo sapiens]
          Length = 465

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 72/208 (34%), Gaps = 25/208 (12%)

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GF   S    R L  E         ++ SAT      E       E+II    ++    E
Sbjct: 257 GFSDHSIRIQRALPSEC------QMLLFSAT-----FEDSVWHFAERIIPDPNVIKLRKE 305

Query: 561 IRSARTQVEDVYDEINLAAQQGL------------RILLTVLTKRMAEDLTEYLYERNIR 608
                  +   Y        +              + ++   T+R A+ LT  + +   +
Sbjct: 306 -ELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQ 364

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD-KEGFLRS 667
           V  +  E+   +R  II+  R GK  VL+  N+   G+D+ +  +V   D   K+G    
Sbjct: 365 VSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPD 424

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITK 695
             + +  IGR  R     +      + +
Sbjct: 425 YETYLHRIGRTGRFGKKGLAFNMIEVDE 452


>gi|193666978|ref|XP_001948493.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 666

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 91/255 (35%), Gaps = 39/255 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++  ++          + + + +   +  R     + GF         P   +
Sbjct: 252 TPGRLIDFLERNTT--------NLKRCTYLVLDEADRM---LDMGFE--------PQIRK 292

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
               +RP    ++ SAT         +  + + I    G ++         +QV DV D+
Sbjct: 293 IIEQIRPDRQVLMWSATWPPEVKNLAEEFLDDYIQVNVGSLNLSA--NHNISQVVDVCDD 350

Query: 575 -----------INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                       ++ +Q   + ++ V TKR  +++ + +     R   +H      ER  
Sbjct: 351 YEKEQKLYALLTDIFSQPDNKTIIFVETKRSVDNIVKLVNRNGWRSIGIHGNKSQNERDH 410

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +   R G+ ++LV  ++   GLD+ +   V   D     +  S    +  IGR  R+  
Sbjct: 411 TLNQFRSGQANILVATDVAARGLDVDDVKYVINFD-----YPNSSEDYVHRIGRTGRSSR 465

Query: 684 SKVILYADTITKSIQ 698
           +       T + + Q
Sbjct: 466 TGTAFTFVTPSNARQ 480


>gi|114641147|ref|XP_001148850.1| PREDICTED: ATP-dependent RNA helicase DDX25 isoform 1 [Pan
           troglodytes]
          Length = 483

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 72/208 (34%), Gaps = 25/208 (12%)

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GF   S    R L  E         ++ SAT      E       E+II    ++    E
Sbjct: 257 GFSDHSIRIQRALPSEC------QMLLFSAT-----FEDSVWHFAERIIPDPNVIKLRKE 305

Query: 561 IRSARTQVEDVYDEINLAAQQGL------------RILLTVLTKRMAEDLTEYLYERNIR 608
                  +   Y        +              + ++   T+R A+ LT  + +   +
Sbjct: 306 -ELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQ 364

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD-KEGFLRS 667
           V  +  E+   +R  II+  R GK  VL+  N+   G+D+ +  +V   D   K+G    
Sbjct: 365 VSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPD 424

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITK 695
             + +  IGR  R     +      + +
Sbjct: 425 YETYLHRIGRTGRFGKKGLAFNMIEVDE 452


>gi|164419732|ref|NP_037396.3| ATP-dependent RNA helicase DDX25 [Homo sapiens]
 gi|61222937|sp|Q9UHL0|DDX25_HUMAN RecName: Full=ATP-dependent RNA helicase DDX25; AltName: Full=DEAD
           box protein 25; AltName: Full=Gonadotropin-regulated
           testicular RNA helicase
 gi|119588072|gb|EAW67668.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 25, isoform CRA_a [Homo
           sapiens]
          Length = 483

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 72/208 (34%), Gaps = 25/208 (12%)

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GF   S    R L  E         ++ SAT      E       E+II    ++    E
Sbjct: 257 GFSDHSIRIQRALPSEC------QMLLFSAT-----FEDSVWHFAERIIPDPNVIKLRKE 305

Query: 561 IRSARTQVEDVYDEINLAAQQGL------------RILLTVLTKRMAEDLTEYLYERNIR 608
                  +   Y        +              + ++   T+R A+ LT  + +   +
Sbjct: 306 -ELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQ 364

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD-KEGFLRS 667
           V  +  E+   +R  II+  R GK  VL+  N+   G+D+ +  +V   D   K+G    
Sbjct: 365 VSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPD 424

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITK 695
             + +  IGR  R     +      + +
Sbjct: 425 YETYLHRIGRTGRFGKKGLAFNMIEVDE 452


>gi|254584256|ref|XP_002497696.1| ZYRO0F11440p [Zygosaccharomyces rouxii]
 gi|238940589|emb|CAR28763.1| ZYRO0F11440p [Zygosaccharomyces rouxii]
          Length = 523

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 72/182 (39%), Gaps = 16/182 (8%)

Query: 504 LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           LP    ++ L F     +     +V      +E+   + + ++ I +        VE R 
Sbjct: 200 LPPQ--HQSLLFSATFPITVKEFMVKHLHKPYEINLMEELTLKGITQ----YYAFVEERQ 253

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
               +  ++ ++ +      + ++   +    E L + + +      Y H+ ++  ER +
Sbjct: 254 KLHCLNTLFSKLQV-----NQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMRQQERNK 308

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  + R GK   LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 309 VFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD-----FPKTAETYLHRIGRSGRFGH 363

Query: 684 SK 685
             
Sbjct: 364 LG 365


>gi|67423413|dbj|BAD99524.1| VASA RNA helicase [Moina macrocopa]
          Length = 843

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 75/179 (41%), Gaps = 13/179 (7%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           T++ SAT    ++++  G  +   +  T    G ++P V       Q +D  +++    +
Sbjct: 598 TLMFSAT-FPDDVQKIAGKYLHDYVFVTTGNIGGMNPDVCQEFHEVQRQDKRNKLVEILR 656

Query: 581 Q--GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                R+++ V +K+ A+ +  +L     +   +H +    +R + +R+ + G+ ++LV 
Sbjct: 657 DLGNSRVIVFVESKKTADFIAAFLANTQFQATSIHGDRLQSQREQALREFKSGQRNILVA 716

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
            N+   GLDI     V   D             +  IGR  R  N+   I + D    +
Sbjct: 717 TNVAARGLDIAGVEYVINYD-----LPADIEEYVHRIGRTGRVGNAGRSISFYDPDRDA 770


>gi|253771020|gb|ACT35658.1| PL10-like protein [Haliotis asinina]
          Length = 775

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L  + TK+ A+ L E+L +       +H +    ER + ++  R G   +LV   +   
Sbjct: 566 TLTFLETKKGADALEEFLQKEGYPATSIHGDRSQREREDALKVFRSGDRPILVATAVAAR 625

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           GLDIP    V   D             +  IGR  R  N  
Sbjct: 626 GLDIPNVRHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 661


>gi|227357070|ref|ZP_03841440.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
           mirabilis ATCC 29906]
 gi|227162762|gb|EEI47725.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
           mirabilis ATCC 29906]
          Length = 611

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 75/198 (37%), Gaps = 23/198 (11%)

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLV-DPPVEIR--SARTQVEDVYD--EINLAAQQ 581
           ++S  P   +       + E I R T    + P E+R  S+ T   D+     +   A++
Sbjct: 174 ILSKIPAEHQTALFSATMPEAIRRITRRFMNDPKEVRIQSSVTTRPDISQSYWMTYGARK 233

Query: 582 GLR------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                           ++ V TK    ++ E L         ++ ++    R + +  L+
Sbjct: 234 NEALIRFLEAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQSLREQTLERLK 293

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G+ D+L+  ++   GLD+    LV   D   +       S +  IGR  R   +   IL
Sbjct: 294 NGRLDILIATDVAARGLDVDRISLVVNYDIPMD-----SESYVHRIGRTGRAGRAGRAIL 348

Query: 689 YADTITKSIQLAIDETTR 706
           + D   + +   I+ T +
Sbjct: 349 FVDNRERRLLRNIERTMK 366


>gi|219112071|ref|XP_002177787.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410672|gb|EEC50601.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 390

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 6/190 (3%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            ++   P  +V  AT      ++       + +    +    V+ R           +I 
Sbjct: 198 FFSATFPEEVVNFATKMVDNPDKILIEDGPEFLVLDVIKQLWVDTREYSGGKLMFLGDIY 257

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G  I + V TK  A+ +   L         +H  V   +R   +   R G+ +VL
Sbjct: 258 SLLTIGQSI-IFVGTKIDADTVHTTLTGAGFTCSVLHGSVDAAQRDTTMEAFRNGESNVL 316

Query: 637 VGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +  N+L  G+D+    +V   D   DK+G      + +  IGR  R       +   +  
Sbjct: 317 ITTNVLARGVDVDNVCMVINYDIPVDKDG-APDFETYLHRIGRTGRFGRKGTAINLISDQ 375

Query: 695 KSIQ--LAID 702
           KS++   AI+
Sbjct: 376 KSVEILAAIE 385


>gi|119468940|ref|ZP_01611965.1| putative ATP-dependent RNA helicase (rhlE-like) [Alteromonadales
           bacterium TW-7]
 gi|119447592|gb|EAW28859.1| putative ATP-dependent RNA helicase (rhlE-like) [Alteromonadales
           bacterium TW-7]
          Length = 415

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 75/187 (40%), Gaps = 28/187 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI---RSARTQVEDVYDEINLAAQ 580
            T++ SAT      +     + E++++   L    +E+    SA  +VE +   ++   +
Sbjct: 183 QTLLFSAT-----FDDSVFGLSEKLLKNPEL----IEVDKRNSAAVEVEQIIYAVDEDRK 233

Query: 581 QGL-----------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           + L           ++L+   TK+MA+ L + + +  ++   +H +     R   +++ +
Sbjct: 234 RELVSHMIGMKNWRQVLIFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALQNFK 293

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  ++   GLDIP    V   +             +  IGR  R     + + 
Sbjct: 294 EGTTRVLVATDVAARGLDIPALKYVINFE-----LPYIAEDYVHRIGRTGRAGEQGLAMS 348

Query: 690 ADTITKS 696
             +I + 
Sbjct: 349 LVSIDEQ 355


>gi|24666101|ref|NP_649009.1| CG5589 [Drosophila melanogaster]
 gi|7293941|gb|AAF49303.1| CG5589 [Drosophila melanogaster]
          Length = 594

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           I    +QGL+  +L+ V +K  A+ L E L    I V  +H+E    +R   ++  R G 
Sbjct: 357 IRDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGS 416

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
             VL+   L+  G+D     LV   D     F  +  S I  IGR  R       I +  
Sbjct: 417 IWVLICTELMGRGIDFKGVNLVINYD-----FPPTTISYIHRIGRTGRAGRPGRAITFFT 471

Query: 692 TITKSIQLAI 701
               S    I
Sbjct: 472 QEDTSNLRGI 481


>gi|71023479|ref|XP_761969.1| hypothetical protein UM05822.1 [Ustilago maydis 521]
 gi|46101534|gb|EAK86767.1| hypothetical protein UM05822.1 [Ustilago maydis 521]
          Length = 775

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 5/110 (4%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   I+ A +     L+  +     ++LT       I  RY+H      ER +++ D R 
Sbjct: 338 LKAWIDRAHKHRRSTLIFAVNIEHVQELTNTFRSAGIDARYLHGGTPMPERRQLLEDFRN 397

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           G + VLV   +L EG D+P    V +    +     S+    Q IGR  R
Sbjct: 398 GVYPVLVNCAILTEGADVPAIDCVLLARPTR-----SRNLFSQMIGRGLR 442



 Score = 44.7 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 14/151 (9%)

Query: 81  QSSISMSEKQTREISEQTMTPSVQALARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITF 140
              +S  + +   I+ ++   +   L RL  S +  +    +     + SI         
Sbjct: 27  VRPLSTVDAERIAIAHRSTVATPPPLRRLSCSSSLEVSTKSLSEQTPTASIATADDSAAP 86

Query: 141 -FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ------ 193
            F ++  Y     Q   I   L  +        +   TGSGKT     +I+ +       
Sbjct: 87  AFSLR-PY-----QEECIQDCLSALDCGVTRIGVSSPTGSGKTTIFTHLIDRLPPRSDTG 140

Query: 194 -RPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
            +   ++  +  LA Q  +   + FP  +VE
Sbjct: 141 GQRVAIIVNSIELALQAANAVTSMFPEKSVE 171


>gi|332020302|gb|EGI60733.1| Putative ATP-dependent RNA helicase DDX5 [Acromyrmex echinatior]
          Length = 570

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 87/241 (36%), Gaps = 35/241 (14%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPTG 553
            + + GF         P   +    +RP   T++ SAT         +  + + I    G
Sbjct: 272 RMLDMGFE--------PQIRKIVEQIRPDRQTLMWSATWPKEVRNLAEEFLTDYIQINIG 323

Query: 554 LVD-----------PPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
            +               E     +++  + +EI+   +   + ++ V TKR  +D+T  +
Sbjct: 324 SLQLAANHNILQIVDVCEEYEKESKLMKLLEEISNEPEN--KTIIFVETKRKVDDITRAI 381

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
                +   +H +    ER  ++   R  +  +LV  ++   GLD+ +   V  LD    
Sbjct: 382 NRYGWQAIGIHGDKSQQERDYVLNQFRNSRSAILVATDVAARGLDVEDVKFVINLD---- 437

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
            +  +    +  IGR  R+  +    YA     +   A D        Q+    K  +NP
Sbjct: 438 -YPSNSEDYVHRIGRTGRSQRTGTA-YAFFTPGNAHKAGD------LIQVLEEAKQVVNP 489

Query: 723 Q 723
           +
Sbjct: 490 K 490


>gi|227486921|ref|ZP_03917237.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227092995|gb|EEI28307.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 455

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 16/175 (9%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE---------DVYD 573
             T++ SAT     L   +G +  + +     +    E  +   QV           V  
Sbjct: 188 HQTMLFSATMPDAILGLARGFM-NKPVHIRAEMSGEAETNATTKQVVFKSHRMDKVAVIS 246

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +  A  +G R ++ V TKR A ++   L     +V  +H ++    R   ++  R G  
Sbjct: 247 RVLQARGRG-RTIIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQGFRDGVV 305

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           D+LV  ++   G+DI +   V             + + +  IGR  R  ++   +
Sbjct: 306 DILVATDVAARGIDIDDVTHVINYQT-----PDDELTYVHRIGRTGRAGHTGTAV 355


>gi|159469610|ref|XP_001692956.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas
           reinhardtii]
 gi|158277758|gb|EDP03525.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas
           reinhardtii]
          Length = 571

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 5/113 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++ V T+R  +++  ++ E       +H      +R   I+  R G ++VL+  ++  
Sbjct: 417 RVIVFVNTQRQCDNVHRHMDELGYHCTILHGGKTQDQREAGIKGFRDGTYNVLIATDVAG 476

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            G+D+P+  LV   D        +  +    IGR  R     + +   T+  +
Sbjct: 477 RGIDVPDVALVVNYD-----MPTNIENYTHRIGRTGRAGRKGIAVTFLTLGDT 524


>gi|302812625|ref|XP_002987999.1| hypothetical protein SELMODRAFT_269342 [Selaginella moellendorffii]
 gi|300144105|gb|EFJ10791.1| hypothetical protein SELMODRAFT_269342 [Selaginella moellendorffii]
          Length = 505

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 74/208 (35%), Gaps = 21/208 (10%)

Query: 524 TTIVVSAT-PGSWEL-------EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E        +  +  I    ++    +   VE+ +   + + +   +
Sbjct: 265 QTLYWSATWPKDVEQLANQFLHDPYKVTIGSSSLKANHSIAQHVEVVNDYEKYQKLIKLL 324

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +     G +IL+ + TKR  + +T+ L         +H +    ER  ++ + + GK  +
Sbjct: 325 DEFMDGG-KILIFMETKRGCDQVTKQLRMEGWPALSIHGDKSQAERDWVLSEFKTGKSPI 383

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  S    +  IGR  R           T++ 
Sbjct: 384 MTATDVAARGLDVKDIRYVINYD-----FPGSCEDYVHRIGRTGRAGAKGTAYTFFTVSN 438

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQ 723
           +          R    +       I P+
Sbjct: 439 AKHA-------RELVSILSEAGQRITPE 459


>gi|296329829|ref|ZP_06872313.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305676555|ref|YP_003868227.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152868|gb|EFG93733.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305414799|gb|ADM39918.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 479

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 85/240 (35%), Gaps = 22/240 (9%)

Query: 525 TIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPVE-----IRSARTQVEDVYDEIN 576
           T++ SAT P   E    Q         I+  GL    +E     +R    +   + D + 
Sbjct: 178 TMLFSATLPEDIEKLSRQYMQNPQHIEIKAAGLTTKNIEHAVIQVRE-ENKFSLLKDVLM 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +     ++   TK     LT+ L +       +H  +   +R +++ + + G++  L
Sbjct: 237 --TENPDSSIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITK 695
           V  ++   G+DI    LV   D   E     K S +   GR  R  N  K I +     K
Sbjct: 295 VATDVAARGIDIENISLVINYDLPLE-----KESYVHRTGRTGRAGNKGKAISFVTAFEK 349

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
                I+E         E  K    + + V  K  E +  +     +  + S +  +  +
Sbjct: 350 RFLADIEE-----YIGFEIQKIEAPSQEEVARKKPEFLAKMNDRPESKKDKSEELNKDIM 404


>gi|170696489|ref|ZP_02887614.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170138592|gb|EDT06795.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 537

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 25/198 (12%)

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLVD---PPVEIRSARTQVEDVYDEINLAAQQGL 583
           +V+ATP + +       +  +I   TG +      +EI     Q  ++   ++    +  
Sbjct: 242 IVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRLEQRTNIAQTVHYVDDRDH 301

Query: 584 R---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +                ++   TK  A+ L   L +       +H ++    R   I+ L
Sbjct: 302 KDRLLDHLLRDEGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTIKAL 361

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R  +  VLV  ++   G+DIP    V   D  K          +  IGR  R   S + +
Sbjct: 362 RERRVRVLVATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGIAV 416

Query: 689 YADTITKSIQLAIDETTR 706
               +  + Q A+    R
Sbjct: 417 SL--VHHAEQGALKRIER 432


>gi|119188415|ref|XP_001244814.1| hypothetical protein CIMG_04255 [Coccidioides immitis RS]
 gi|118575174|sp|Q1DZK8|DBP3_COCIM RecName: Full=ATP-dependent RNA helicase DBP3
          Length = 464

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 21/202 (10%)

Query: 496 TLAEYGFR---------LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE 546
            + + GF          +PS    + + F     +    +  S T           I   
Sbjct: 256 RMLDKGFEQDIQDIVKGIPSTQKRQTIMFTATWPIGVRNLAASFTKNP----VTVTIGDS 311

Query: 547 QIIRPTGLVDPPVEI---RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
             IR    +   VE+       +++ ++        +   RIL+  L K+ A  +  ++ 
Sbjct: 312 SDIRANKRIKQMVEVLQPYEKDSRLLELLRRYQDGGKNNHRILVFCLYKKEAMRVERFIG 371

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            +  +V  +H ++   ER   +   + G   +LV  ++   GLDIP   LV  +      
Sbjct: 372 SKGFKVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIPAVKLVLNV-----T 426

Query: 664 FLRSKTSLIQTIGRAARNVNSK 685
           F  +    +  IGR  R     
Sbjct: 427 FPLTIEDYVHRIGRTGRAGAEG 448


>gi|330808146|ref|YP_004352608.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376254|gb|AEA67604.1| putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 448

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 92/262 (35%), Gaps = 32/262 (12%)

Query: 471 LFVDESHVTIPQISGMYRGDFH-------RKATLAEYGFRLPSCMDNRPLRFEEWNCLRP 523
           + +      I Q++                   + + GF      D + L  E  N  R 
Sbjct: 124 ILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGF----AEDVQRLVDECTN--RQ 177

Query: 524 TTIVVSATPG--------SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT G        +  L   + + +  + +        +         E + + +
Sbjct: 178 QTMLFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQHKEQIVNWL 237

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A +   + ++   T+ MA+ +   L  +  +   +H E    +R   I  L+ G   +
Sbjct: 238 L-ANETYEKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYAD 691
           LV  ++   GLD+    +V   D  + G        +  IGR  R  N      +I + D
Sbjct: 297 LVATDVAARGLDVEGLDMVINFDMPRSG-----DEYVHRIGRTGRAGNDGLAISLICHGD 351

Query: 692 T-ITKSIQLAIDETTRRREKQL 712
             +  SI+  + ++  RR  + 
Sbjct: 352 WNLMSSIERYLKQSFERRTIKE 373


>gi|224085245|ref|XP_002307523.1| predicted protein [Populus trichocarpa]
 gi|222856972|gb|EEE94519.1| predicted protein [Populus trichocarpa]
          Length = 573

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 90/251 (35%), Gaps = 26/251 (10%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSARTQVEDVYDEI 575
            TI+V+AT      +L   +   +E +   T            +++  +  ++E +   +
Sbjct: 308 QTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 367

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL--GKF 633
             +  +G R+++   T   +     +L E  I     H EV   +R+E +   +   G  
Sbjct: 368 EPSLAKGNRVMVFCNTLNSSRAADHFLAENQISTVNYHGEVPAEQRVENLNKFKSDDGDC 427

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADT 692
             LV  +L   GLD+ +   V + D     F  +    +   GR AR     KV      
Sbjct: 428 PTLVCTDLAARGLDL-DVDHVIMFD-----FPLNSIDYLHRTGRTARMGAKGKVTSLVAR 481

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             + +   I+E  R+       N+   +   +V     ++    + E    +   I A  
Sbjct: 482 KDQQLAARIEEAMRK-------NES--LESLTVDNVRRDIARARITEQQGKSAKLIKASN 532

Query: 753 LSLSKKKGKAH 763
              + K  + H
Sbjct: 533 QKSNNKNMEKH 543


>gi|224551506|gb|ACN54195.1| Ddx3y [Bos taurus]
          Length = 635

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TK+ A+ L ++LY        +H +    +R E +   R GK  +LV   +   
Sbjct: 444 TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 503

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           GLDI     V   D             +  IGR  R  N  
Sbjct: 504 GLDISNVKHVINFD-----LPGDIEEYVHRIGRTGRVGNLG 539


>gi|118639520|gb|ABL09512.1| ATP-dependent RNA helicase [Halobacillus halophilus DSM 2266]
          Length = 395

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 82/226 (36%), Gaps = 27/226 (11%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP-------GSWELEQCQGIIV-EQ 547
            + E GF LP   D      E        T++ SAT        G   L+  + I V E+
Sbjct: 155 QMLEAGF-LPDVKDILSQTPE-----AKQTMLFSATITTQVNQLGKKILKDPRRITVQEK 208

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
            +   G+     E      Q + + + +     +    L+   TKR A  L + L     
Sbjct: 209 TVTLEGIKQLVYETTDRAKQ-DTLIEIMQE--HRPFLALIFCRTKRRARKLNDALLSHGF 265

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
               +H ++   +R ++++  R  K   LV  ++   GLD+     V   D       + 
Sbjct: 266 EADELHGDLSQAKREKVMKRFRDAKIQYLVATDVAARGLDVEGVTHVFNYD-----IPQD 320

Query: 668 KTSLIQTIGRAARNVNSK-VILYADTIT----KSIQLAIDETTRRR 708
             S I  IGR  R       I +A        +SI+ +I +   RR
Sbjct: 321 PESYIHRIGRTGRAGGKGLAITFAAPKDRQALQSIEKSIKQKIERR 366


>gi|319941925|ref|ZP_08016246.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Sutterella wadsworthensis 3_1_45B]
 gi|319804578|gb|EFW01448.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Sutterella wadsworthensis 3_1_45B]
          Length = 503

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 66/191 (34%), Gaps = 17/191 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-----QIIRPTGLVDPPV-EIRSART--QVEDVYDEI 575
            +++ SAT      +  +  + +     ++ R     +    E+ +     + + + D +
Sbjct: 211 QSLLFSATFSPEIKKLAKSFLKDNPTVIEVARENSTAETVTQELFAVNDREKTDVLIDML 270

Query: 576 NLAAQQGL---RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                +G    ++L+ V  K     L   L    I    +H +    ER   +   + G 
Sbjct: 271 KTRGPEGTPLTQVLVFVNAKITCRRLARTLERVGINADAIHGDKTQEERQVALEGFKNGA 330

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY-AD 691
             VLV  ++   GLDI E   V   D        S    +  IGR  R     V    A 
Sbjct: 331 IHVLVATDVAARGLDIKELPFVINYDV-----PYSAEDYVHRIGRTGRAGAKGVATMLAT 385

Query: 692 TITKSIQLAID 702
              K +  AI+
Sbjct: 386 PEDKRLVEAIE 396


>gi|308177940|ref|YP_003917346.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745403|emb|CBT76375.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 538

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +++   +  A  +G + ++   TKR A  L++ L +R      +H ++    R + ++  
Sbjct: 266 DEMVARLLQAEGRG-KTIIFTQTKRSAARLSDELIDRGFNAGSLHGDLGQGAREQALKAF 324

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           R GK ++LV  ++   G+D+ +   V  L          + + +  +GR  R  N+   +
Sbjct: 325 RSGKVEILVATDVAARGIDVDDVTHVVNL-----QCPDDENTYLHRVGRTGRAGNTGTAV 379

Query: 688 LYADT 692
            + D 
Sbjct: 380 TFVDW 384


>gi|307249783|ref|ZP_07531761.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858198|gb|EFM90276.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 596

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 72/198 (36%), Gaps = 28/198 (14%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TK    D+TE       R   ++ ++    R + +  L+ G+ D+LV  ++   
Sbjct: 225 AIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAAR 284

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR------NVNSKVILYADTITKSIQ 698
           G+DI    LV   D   +    S    I   GRA R       V  +       I   ++
Sbjct: 285 GIDIERISLVVNFDIPLD--AESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 342

Query: 699 LAIDET---------TRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
             IDE           +RREK         +H+       EK  E+++ +   D     +
Sbjct: 343 KPIDEVAIPNHEILMAKRREKFKARVSKQLEHHD-----LEKYRELLEDLFTADQDHEEL 397

Query: 747 SIDAQQLSLSKKKGKAHL 764
           +     + +  ++ +  +
Sbjct: 398 AA---AMMMMLQEKQKLI 412


>gi|227541917|ref|ZP_03971966.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182360|gb|EEI63332.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 455

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 16/175 (9%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE---------DVYD 573
             T++ SAT     L   +G +  + +     +    E  +   QV           V  
Sbjct: 188 HQTMLFSATMPDAILGLARGFM-NKPVHIRAEMSGEAETNATTKQVVFKSHRMDKVAVIS 246

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +  A  +G R ++ V TKR A ++   L     +V  +H ++    R   ++  R G  
Sbjct: 247 RVLQARGRG-RTIIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQGFRDGVV 305

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           D+LV  ++   G+DI +   V             + + +  IGR  R  ++   +
Sbjct: 306 DILVATDVAARGIDIDDVTHVINYQT-----PDDELTYVHRIGRTGRAGHTGTAV 355


>gi|218530745|ref|YP_002421561.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218523048|gb|ACK83633.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 510

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R+L+   TK  A+ +   L + ++    +H      +R   +   R G   VLV  ++ 
Sbjct: 246 ERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVLVATDIA 305

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAI 701
             G+D+     V   D           S +  IGR AR     + I + +   ++    I
Sbjct: 306 ARGIDVDGVTHVVNYD-----LPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI 360

Query: 702 DETTRRR 708
           + TTR++
Sbjct: 361 ERTTRQK 367


>gi|163851993|ref|YP_001640036.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|240139120|ref|YP_002963595.1| RNA helicase [Methylobacterium extorquens AM1]
 gi|163663598|gb|ABY30965.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
 gi|240009092|gb|ACS40318.1| RNA helicase [Methylobacterium extorquens AM1]
          Length = 510

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R+L+   TK  A+ +   L + ++    +H      +R   +   R G   VLV  ++ 
Sbjct: 246 ERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVLVATDIA 305

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAI 701
             G+D+     V   D           S +  IGR AR     + I + +   ++    I
Sbjct: 306 ARGIDVDGVTHVVNYD-----LPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI 360

Query: 702 DETTRRR 708
           + TTR++
Sbjct: 361 ERTTRQK 367


>gi|34495838|ref|NP_900053.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34101693|gb|AAQ58061.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 472

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 17/193 (8%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
             ++ SAT            L+  + + V +      LV   V +     + E +   I 
Sbjct: 183 QNLLFSATFSDEIKALADKLLDNPKLVEVARRNTTNELVSQKVHLVDRDKKTELLIHLI- 241

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              Q   ++L+   TK  A  L E L +  I    +H       R   + D + G+  VL
Sbjct: 242 -REQNWFQVLVFTRTKHGANRLAEKLDKIGIPAAAIHGNKSQNARTRALADFKSGELQVL 300

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD----- 691
           V  ++   GLDI +   V   +             I   GRA     +  ++  D     
Sbjct: 301 VATDIAARGLDIDQLPHVVNFELP--NVPEDYVHRIGRTGRAGSPGEALSLVCVDEFSFL 358

Query: 692 -TITKSIQLAIDE 703
             I K I+++I+ 
Sbjct: 359 RDIEKLIKMSIER 371


>gi|313227472|emb|CBY22619.1| unnamed protein product [Oikopleura dioica]
          Length = 462

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 67/200 (33%), Gaps = 24/200 (12%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVED 570
           +  +   +  SAT     +   + I+    I          T +    V  R    Q  D
Sbjct: 254 DKEKCQFLFFSATYDDEVMRFAEKIVPHANIIQLKREEETLTNIKQYQVHCRD-MDQKYD 312

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
               I      G   ++   T+  A+ L E ++     V  +  E+    R +I++  R 
Sbjct: 313 ALANIYATLSVGQ-AVIFCHTRNTAKWLAEKMHSDGYIVALLSGELDVSSRAKILKRFRE 371

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDAD--------------KEGFLRSKTSLIQTIG 676
           GK  VLV  N+   G+D+ +  LV   D                K+       + I  IG
Sbjct: 372 GKERVLVTTNVCARGIDVEQVTLVVNFDLPMTKVTQLSLHFNQSKKDRHADFETYIHRIG 431

Query: 677 RAARNVNSKVILYADTITKS 696
           R  R   S V +   +  + 
Sbjct: 432 RTGRFGKSGVAINFVSDRQD 451


>gi|254417807|ref|ZP_05031531.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
 gi|196183984|gb|EDX78960.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
          Length = 510

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 76/226 (33%), Gaps = 30/226 (13%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           +   +  SAT    E+ +  G +++  ++           R +++ V      +    ++
Sbjct: 194 KRQNLFFSAT-MPTEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVV-----HVEQGRKR 247

Query: 582 GL-----------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
            L           R L+   TK  A+ +  YL    +    +H      +R   +   + 
Sbjct: 248 ALLTEMFSDPEYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKK 307

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILY 689
           GK  VLV  ++   G+D+     V   +           + +  IGR AR   +   I +
Sbjct: 308 GKLRVLVATDIAARGIDVDGVSHVVNFE-----LPHVPEAYVHRIGRTARAGADGTAISF 362

Query: 690 ADTITKSIQLAIDETTR-------RREKQLEHNKKHNINPQSVKEK 728
                  +   I++ TR       RR  +        I    V +K
Sbjct: 363 VAGDEMKLLKDIEKVTRQKIPAIDRRNDKALGQLDATIMATGVGKK 408


>gi|19113116|ref|NP_596324.1| ATP-dependent RNA helicase Ste13 [Schizosaccharomyces pombe 972h-]
 gi|1174456|sp|Q09181|DHH1_SCHPO RecName: Full=Putative ATP-dependent RNA helicase ste13
 gi|703066|dbj|BAA06178.1| RNA helicase [Schizosaccharomyces pombe]
 gi|4176526|emb|CAA22882.1| ATP-dependent RNA helicase Ste13 [Schizosaccharomyces pombe]
          Length = 485

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 14/178 (7%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E+     + +  + +    VD   ++           + +    Q    I +   +  
Sbjct: 242 PYEINLMDELTLRGVTQYYAFVDESQKVH--------CLNTLFSKLQINQSI-IFCNSTN 292

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L + + E      Y H+++    R  +  + R G    LV  +LL  G+DI    +
Sbjct: 293 RVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNV 352

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
           V   D     F ++  + +  IGR+ R  +  + +   +      L   E     E Q
Sbjct: 353 VINFD-----FPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIENELGTEIQ 405


>gi|152979711|ref|YP_001345340.1| DEAD/DEAH box helicase domain-containing protein [Actinobacillus
           succinogenes 130Z]
 gi|150841434|gb|ABR75405.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes
           130Z]
          Length = 615

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 86/264 (32%), Gaps = 59/264 (22%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV-DPPVEIRSARTQVEDVYDEINLAAQQ 581
             T + SAT            + E I R T      P E+R   TQ  +     +    +
Sbjct: 181 HQTALFSAT------------MPEPIRRITKRFMTNPQEVRIQSTQRTNPDIAQSCWYVR 228

Query: 582 GLR----------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           G R                 ++   TK    D+TE L +   R   ++ ++    R + +
Sbjct: 229 GYRKNEALLRFLEVEDFDAAIIFTRTKTGTLDVTELLDKHGFRAAALNGDMTQQAREQTL 288

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             LR G  D+LV  ++   GLD+    LV   D           S +  IGR  R   S 
Sbjct: 289 DRLRNGSLDILVATDVAARGLDVERISLVVNYD-----IPLDAESYVHRIGRTGRAGRSG 343

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN 745
             +              E   RR               +++  + + I+ + L +     
Sbjct: 344 SAILFV-----------EPRERRLLG------------NIERLMKKPIEEVELPNHERLQ 380

Query: 746 ISIDAQQLSLSKKKGKAHLKSLRK 769
               A+ ++   K+ + H   L K
Sbjct: 381 ACRRAKFVAKITKQLEHH--DLEK 402


>gi|189500626|ref|YP_001960096.1| transcription-repair coupling factor [Chlorobium phaeobacteroides
           BS1]
 gi|189496067|gb|ACE04615.1| transcription-repair coupling factor [Chlorobium phaeobacteroides
           BS1]
          Length = 1107

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 65/204 (31%), Gaps = 31/204 (15%)

Query: 173 LLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232
           + G+ GS  T    ++   +  P +V+A   I    LY    +                 
Sbjct: 65  ISGIQGSLATLLAVQLFTDLGIPVLVLASQSIF--DLYDNDLSEL--------------L 108

Query: 233 QPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQ 292
           QPE     +D        ++                +   ++ S    +  +   E    
Sbjct: 109 QPEQVHTASDELSAALGKLSSD--------------QKIVLLASFDDLLTPLHCPEEQDS 154

Query: 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSM 352
           M+  L+I       +L + L++  Y + +     G +   G  I+IFP        R+  
Sbjct: 155 MLFTLQIDKEAGYGKLKNFLLQNDYSKSEFVEEEGEYSTRGSIIDIFP-FGSKAPVRIEF 213

Query: 353 FGNDIEEISEFYPLTGQKIRNVET 376
           FG+ +  +  F   +      ++ 
Sbjct: 214 FGDTVTSLRSFDTGSQLSGARLDR 237


>gi|326203304|ref|ZP_08193169.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325986562|gb|EGD47393.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 542

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 4/125 (3%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            ++    ++   TK   + +  +L ++    + +H ++   +R+  I+  + GKF +LV 
Sbjct: 238 VEKPESCMIFCNTKAAVDRVQSFLTKKGYSSQALHGDIPQSKRLNTIQQFKQGKFHILVA 297

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   G+ I    LV   D   +    +    I   GRA  +  +  ++  D I     
Sbjct: 298 TDVAARGIHIEGLSLVINYDVPNDK--DNYVHRIGRTGRAGHDGRAFSLVTGDDII--SL 353

Query: 699 LAIDE 703
             I+E
Sbjct: 354 YEIEE 358


>gi|238854499|ref|ZP_04644837.1| cold-shock DEAD box protein A [Lactobacillus jensenii 269-3]
 gi|260664817|ref|ZP_05865668.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           SJ-7A-US]
 gi|282934107|ref|ZP_06339386.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|313472627|ref|ZP_07813116.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           jensenii 1153]
 gi|238832852|gb|EEQ25151.1| cold-shock DEAD box protein A [Lactobacillus jensenii 269-3]
 gi|239529420|gb|EEQ68421.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           jensenii 1153]
 gi|260561300|gb|EEX27273.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301854|gb|EFA94119.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
          Length = 484

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 78/199 (39%), Gaps = 13/199 (6%)

Query: 517 EWNCLRPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVED 570
           ++   R  T++ SAT   P     E+         I+   L    ++   +R+   +  D
Sbjct: 169 DFAKNREHTLLFSATMPKPILRIGEKFMKEPEIVQIKSKELTADLIDQYFVRAKEAEKFD 228

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +       L  ++   TKR  ++LT  L  R      +H ++   +R+ +++  + 
Sbjct: 229 IMCRLIDVQAPDL-AVVFGRTKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKN 287

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           GK D+LV  ++   GLDI     V   D       +   S +  IGR  R   + + + +
Sbjct: 288 GKLDILVATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRTGRAGKNGISVTF 342

Query: 690 ADTITKSIQLAIDETTRRR 708
                      I+  T+++
Sbjct: 343 VTPNEIGYMRTIENLTKKK 361


>gi|196003500|ref|XP_002111617.1| hypothetical protein TRIADDRAFT_55837 [Trichoplax adhaerens]
 gi|190585516|gb|EDV25584.1| hypothetical protein TRIADDRAFT_55837 [Trichoplax adhaerens]
          Length = 651

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 9/178 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++ V TK  A DL + +    + V+ +HS++   +R EII   R+GK   +V  ++ 
Sbjct: 326 QRSVVFVTTKVEANDLAQKINGFGLPVKPLHSDLSQNKREEIIEAFRVGKLKAIVATDVA 385

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
             GLDIPE  LV  +     GF       +   GR  R   S V +      +  +L + 
Sbjct: 386 ARGLDIPETDLVIQVAPPPNGF----DFYVHRTGRTGRAGRSGVAVLIYGSDRKDRLFLK 441

Query: 703 ETTRRREKQLEHNKKHNINPQSVKE-KIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
           E   R++ Q+E  +K  +  + + +  I    D +   D  +   ++   Q  L K++
Sbjct: 442 EL--RQQVQVE--EKSPLKFEEIAKYAISAAGDRLQEADQRSIKFALPKAQELLQKEE 495


>gi|217973860|ref|YP_002358611.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217498995|gb|ACK47188.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 451

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 12/174 (6%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSAR-TQVEDVYD 573
           +  R  T++ SAT   +E+      +++      I         +  R      ++    
Sbjct: 176 DHKRRQTLMFSATLDHYEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEA 235

Query: 574 EINL--AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +      +   ++++   T+   E L   L E+      +  ++K   R +I+     G
Sbjct: 236 LLARLLKDETHKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQIMDQFARG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +  VLV  ++   GLD+    LV   D  K          +  IGR  R     
Sbjct: 296 QQQVLVTTDVASRGLDLLNVSLVVNFDMPKF-----AEEYVHRIGRTGRAGAKG 344


>gi|73965229|ref|XP_861744.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 10 [Canis
           familiaris]
          Length = 616

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 70/190 (36%), Gaps = 25/190 (13%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 354

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE--GLDIPECGL 653
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++     GLD+ +   
Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLGLDVEDVKF 414

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           V   D     +  S    I  IGR AR+  +       T   +I+   D         + 
Sbjct: 415 VINYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPN-NIKQVSD------LISVL 462

Query: 714 HNKKHNINPQ 723
                 INP+
Sbjct: 463 REANQAINPK 472


>gi|67612975|ref|XP_667267.1| ATP-dependent RNA helicase [Cryptosporidium hominis TU502]
 gi|54658391|gb|EAL37042.1| ATP-dependent RNA helicase [Cryptosporidium hominis]
          Length = 499

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 17/186 (9%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   TK+  + LT  L      V  +HS +    R+  +   R     +LV   +   G
Sbjct: 317 IIFTATKQQCQMLTSCLEIMGYSVTGLHSLMNQRRRLASLGKFRSKTSKLLVATGVAARG 376

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LDIP+   V   D     F RS    I  IGR  R   + + L   T      +   E+ 
Sbjct: 377 LDIPDVEFVINYD-----FPRSFEDYIHRIGRVGRANKTGISLTFVTEQDVPYVYEFESK 431

Query: 706 RRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
            ++E +L            +K    EV+  +     A     +  +++  ++K  +A  +
Sbjct: 432 MKKEMEL------------LKLDEDEVLKNMNRVTVAQQKALLLLEEIGFNEKNQEARER 479

Query: 766 SLRKQM 771
            L+  M
Sbjct: 480 KLKVLM 485


>gi|330446057|ref|ZP_08309709.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490248|dbj|GAA04206.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 426

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 85/262 (32%), Gaps = 28/262 (10%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         V    V++ +I      +  R     + GF +      + +  E
Sbjct: 143 TPGRLLD--------HVFNRSVSLTEIETFVLDEADRM---LDMGFIVDIQRIMKRMPDE 191

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVEDV 571
                   T+  SAT      +    I+ E     + P       VE  +       +  
Sbjct: 192 R------QTLFFSATFSKQVKKLAFDILTEPKMVEVTPANTAAETVEQMVYPVDKHRKAE 245

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                + ++   ++L+   TK+ ++ L + L    I+   ++ +     R   + + + G
Sbjct: 246 LLAYLIGSRNWQQVLVFTKTKQGSDKLAKDLGLDGIKAVSINGDKSQGARQRALDEFKSG 305

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYA 690
           K  VLV  ++   GLDI + G V   D             +  IGR  R       I   
Sbjct: 306 KVRVLVATDVAARGLDIEQLGYVVNFD-----MPYKAEDYVHRIGRTGRAGMTGHAITLM 360

Query: 691 DTITKSIQLAIDETTRRREKQL 712
               +    AI+E    R  Q 
Sbjct: 361 SLDEEWALKAIEELLDTRIPQQ 382


>gi|194216767|ref|XP_001501051.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           [Equus caballus]
          Length = 935

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 433 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 492

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 493 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 606

Query: 696 S 696
           S
Sbjct: 607 S 607


>gi|308810851|ref|XP_003082734.1| putative ethylene-responsive RNA helicase (ISS) [Ostreococcus
           tauri]
 gi|116061203|emb|CAL56591.1| putative ethylene-responsive RNA helicase (ISS) [Ostreococcus
           tauri]
          Length = 682

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 66/179 (36%), Gaps = 12/179 (6%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQIIRPTGLVDP-------PVEIRSARTQVEDVYDE 574
            T++ +AT P    E+ +          R +G  D           +       ED Y++
Sbjct: 241 QTLLFTATWPVEVREIARTLVRNNPVEFRVSGAGDSLLASKNVEQIVHVMNGDEEDKYEK 300

Query: 575 INLAAQQ---GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           +    ++   G R+L+ V TK   + LT  L         +H + +  ER  ++ + + G
Sbjct: 301 LIETLEREMDGERLLVFVETKASVDALTRKLRVGGWPALGLHGDKEQKERDWVLSEFKSG 360

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              +++  ++   GLD+    LV   D    G +      I   GRA R   S      
Sbjct: 361 SSPIMIATDVASRGLDVEGVKLVVNYDFPNRGGVEEYVHRIGRTGRAGRLGKSVTFFTI 419


>gi|115473749|ref|NP_001060473.1| Os07g0647900 [Oryza sativa Japonica Group]
 gi|143456709|sp|Q5K5B6|RH57_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 57
 gi|22093706|dbj|BAC07000.1| putative ATP-dependent RNA helicase [Oryza sativa Japonica Group]
 gi|23495827|dbj|BAC20037.1| putative ATP-dependent RNA helicase [Oryza sativa Japonica Group]
 gi|113612009|dbj|BAF22387.1| Os07g0647900 [Oryza sativa Japonica Group]
 gi|125601315|gb|EAZ40891.1| hypothetical protein OsJ_25369 [Oryza sativa Japonica Group]
          Length = 540

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L + L   ++R   +H+++   +R + + +LR GK  VL+   ++  
Sbjct: 388 VLIFVQSKERAKELYKELAFDDVRADVIHADLDEEQRQDAVDNLRAGKTWVLIATEVIAR 447

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
           G+D      V   D     F  S ++ I  IGR+ R   S   I +     K     I
Sbjct: 448 GMDFKGVNCVINYD-----FPESASAYIHRIGRSGRAGRSGEAITFFTEEDKPFLRNI 500


>gi|172056656|ref|YP_001813116.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171989177|gb|ACB60099.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 530

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 20/225 (8%)

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
            +    +E++   +Q  DV   +          ++   TK+  +++TE L +R      +
Sbjct: 214 NIDQSFIELK--ESQKFDVLCRLIDT-DSPELSIIFGRTKKRVDEMTEGLIQRGYTADGL 270

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H ++   +R ++IR  + G  D+LV  ++   GLDI     V   D       +   S +
Sbjct: 271 HGDLTQAKRDQVIRRFKKGTIDILVATDVAARGLDISGVTHVYNFDV-----PQDPESYV 325

Query: 673 QTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE---- 727
             IGR  R   +   I +           I+  T +     + +++H      + E    
Sbjct: 326 HRIGRTGRAGKTGSAITFVTPREFGQIKTIERVTNK-----KMSRRHAPTLDEILEGNLK 380

Query: 728 -KIMEVIDPILLEDAAT-TNISIDAQQLSLSKKKGKAHLKSLRKQ 770
               E+I  +  +++   T ++ +  +   + +   A LK L K+
Sbjct: 381 LAAQELIKRVEAKNSQEYTTLAQELLEEYEAVELIAAALKGLTKE 425


>gi|294139497|ref|YP_003555475.1| ATP-dependent RNA helicase SrmB [Shewanella violacea DSS12]
 gi|293325966|dbj|BAJ00697.1| ATP-dependent RNA helicase SrmB [Shewanella violacea DSS12]
          Length = 408

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 77/218 (35%), Gaps = 17/218 (7%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVEDVYDEI 575
           R  T++ SAT  GS        ++   +             +   I  A  +        
Sbjct: 178 RKQTMLFSATLEGSDVGRFSHQLLTNPVKVEAEAPRSEKAKIHQWIHIADNKEHKFAMLC 237

Query: 576 NLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           N+  Q+   R ++ V T+     L   L    I   +M  +++  +R + +     G+ +
Sbjct: 238 NILRQEDVTRTIVFVKTREGVASLEGLLQREGIICSFMRGDMEQKQRFQALGRFTKGEVN 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-----Y 689
           VL+  ++   G+D+ +   V   D  +     S  + +  IGR AR       +     +
Sbjct: 298 VLLATDVAARGIDVDDISHVINFDMPR-----SADTYVHRIGRTARAGAKGTAISLVEAH 352

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
              +   I+  ID+  +RR  +    K     P    +
Sbjct: 353 DIRVVGKIERYIDQVLKRRFIKDLRPKNKEAKPPGKNK 390


>gi|225627424|ref|ZP_03785461.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
 gi|256159665|ref|ZP_05457418.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           ceti M490/95/1]
 gi|256254934|ref|ZP_05460470.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           ceti B1/94]
 gi|260168662|ref|ZP_05755473.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           sp. F5/99]
 gi|261222116|ref|ZP_05936397.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|261758136|ref|ZP_06001845.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|265998081|ref|ZP_06110638.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
 gi|225617429|gb|EEH14474.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
 gi|260920700|gb|EEX87353.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|261738120|gb|EEY26116.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|262552549|gb|EEZ08539.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
          Length = 435

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 16/191 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVED------VYD 573
            T+  SAT    E+ +     +   +R            V  R  ++  +D      + D
Sbjct: 180 QTLFFSAT-MPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRD 238

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I          ++    K+   +L   L         +H ++    R+ ++   + GK 
Sbjct: 239 LIQSEGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKL 298

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIP+   V   D             +  IGR  R   S       T 
Sbjct: 299 RLLVASDVAARGLDIPDVSHVFNFDVPI-----HAEDYVHRIGRTGRAGRSGKAFTIVTS 353

Query: 694 TKSIQLAIDET 704
           + +  LA  E+
Sbjct: 354 SDTKYLAAIES 364


>gi|133777033|gb|AAH43036.4| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Mus musculus]
          Length = 810

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 314 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 373

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 374 VEFTSSG-SVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 432

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 433 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 487

Query: 696 S 696
           S
Sbjct: 488 S 488


>gi|15218071|ref|NP_173516.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|108861895|sp|Q8H0U8|RH42_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 42
 gi|4836896|gb|AAD30599.1|AC007369_9 Similar to RNA helicases [Arabidopsis thaliana]
 gi|332191919|gb|AEE30040.1| DEAD-box ATP-dependent RNA helicase 42 [Arabidopsis thaliana]
          Length = 1166

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 69/180 (38%), Gaps = 13/180 (7%)

Query: 524 TTIVVSAT-PGSWE--LEQCQGIIVEQIIRPTGLVDP----PVEIRSARTQVEDVYDEIN 576
            T++ SAT P   E    +     VE  +    +V+      VE+R    +   + + + 
Sbjct: 712 QTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 771

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             +++G +IL+ V ++   + L   + + +     +H      +R   I D +    ++L
Sbjct: 772 EWSEKG-KILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLL 830

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLD+ E  LV   DA            +  +GR  R       +   +   +
Sbjct: 831 IATSVAARGLDVKELELVVNFDA-----PNHYEDYVHRVGRTGRAGRKGCAVTFISEDDA 885


>gi|26340024|dbj|BAC33675.1| unnamed protein product [Mus musculus]
          Length = 810

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 314 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 373

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 374 VEFTSSG-SVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 432

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 433 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 487

Query: 696 S 696
           S
Sbjct: 488 S 488


>gi|89069624|ref|ZP_01156963.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus
           HTCC2516]
 gi|89044822|gb|EAR50922.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus
           HTCC2516]
          Length = 406

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 63/170 (37%), Gaps = 16/170 (9%)

Query: 524 TTIVVSAT--------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT         G++ L     + V    +P   VD  V   +   +   + D +
Sbjct: 182 QTMLFSATMPKQMSEIAGAY-LTDPVRVQVSPPGKPADKVDQSVHFVAKDAKQALLIDLL 240

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +  A +  R L+   TK  AE L + L         +H      +R   +   R GK  V
Sbjct: 241 D--AHRDERALVFARTKHGAERLMKQLDRAGFAASSIHGNKSQGQRNRALDGFREGKVRV 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           LV  ++   G+DIP  G V   +           + +  IGR AR     
Sbjct: 299 LVATDVAARGIDIPGVGYVYNYE-----LPNVPENYVHRIGRTARAGADG 343


>gi|307252129|ref|ZP_07534028.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860429|gb|EFM92443.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 596

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 72/198 (36%), Gaps = 28/198 (14%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TK    D+TE       R   ++ ++    R + +  L+ G+ D+LV  ++   
Sbjct: 225 AIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAAR 284

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR------NVNSKVILYADTITKSIQ 698
           G+DI    LV   D   +    S    I   GRA R       V  +       I   ++
Sbjct: 285 GIDIERISLVVNFDIPLD--AESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 342

Query: 699 LAIDET---------TRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
             IDE           +RREK         +H+       EK  E+++ +   D     +
Sbjct: 343 KPIDEVAIPNHEILMAKRREKFKARVSKQLEHHD-----LEKYRELLEDLFTADQDHEEL 397

Query: 747 SIDAQQLSLSKKKGKAHL 764
           +     + +  ++ +  +
Sbjct: 398 AA---AMMMMLQEKQKLI 412


>gi|197287236|ref|YP_002153108.1| ATP-dependent RNA helicase DeaD [Proteus mirabilis HI4320]
 gi|194684723|emb|CAR46715.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
           mirabilis HI4320]
          Length = 616

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 75/198 (37%), Gaps = 23/198 (11%)

Query: 527 VVSATPGSWELEQCQGIIVEQIIRPTGLV-DPPVEIR--SARTQVEDVYD--EINLAAQQ 581
           ++S  P   +       + E I R T    + P E+R  S+ T   D+     +   A++
Sbjct: 179 ILSKIPAEHQTALFSATMPEAIRRITRRFMNDPKEVRIQSSVTTRPDISQSYWMTYGARK 238

Query: 582 GLR------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                           ++ V TK    ++ E L         ++ ++    R + +  L+
Sbjct: 239 NEALIRFLEAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQSLREQTLERLK 298

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G+ D+L+  ++   GLD+    LV   D   +       S +  IGR  R   +   IL
Sbjct: 299 NGRLDILIATDVAARGLDVDRISLVVNYDIPMD-----SESYVHRIGRTGRAGRAGRAIL 353

Query: 689 YADTITKSIQLAIDETTR 706
           + D   + +   I+ T +
Sbjct: 354 FVDNRERRLLRNIERTMK 371


>gi|195453762|ref|XP_002073931.1| GK14378 [Drosophila willistoni]
 gi|194170016|gb|EDW84917.1| GK14378 [Drosophila willistoni]
          Length = 683

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 62/180 (34%), Gaps = 13/180 (7%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            TI+ SAT  PG   L         ++      +  T  V   V+      +        
Sbjct: 442 QTIMTSATWPPGVRRLANSYMTNPIEVCVGSLDLAATHSVKQIVQFLEDDKEKYRTIKSF 501

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                +  +I++    K  A+DL+  L       + +H      +R + I D++ G   +
Sbjct: 502 IKNMGESDKIIIFCGRKARADDLSSDLTLDGFMTQCIHGNRDQNDREQAIADIKSGVVHI 561

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI +   V   D     F R+    +  +GR  R       +   T   
Sbjct: 562 LVATDVASRGLDIEDISHVINYD-----FPRNIEEYVHRVGRTGRAGRKGTSISFITRED 616


>gi|109129179|ref|XP_001107585.1| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 2 [Macaca
           mulatta]
          Length = 427

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 217 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 270

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 271 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 330

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 331 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 389

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 390 MVDSKHSMNIL----NR---IQEHFNKK 410


>gi|119945261|ref|YP_942941.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119863865|gb|ABM03342.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 441

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 65/187 (34%), Gaps = 14/187 (7%)

Query: 523 PTTIVVSAT-PGS-----WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
              ++ SAT P        EL      I  Q    + LV     +   + Q   +   + 
Sbjct: 205 KQILLFSATFPEQVQALTQELLNDPVEIQLQSSDASTLVQRVFTVN--KGQKTALLAHLI 262

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q  + L+ V  K     L E L +R I     H +     R  ++   + G+ DVL
Sbjct: 263 -KQHQWQQALIFVNAKNSCNHLAEKLSKRGISAEVFHGDKGQGARSRVLDAFKAGEIDVL 321

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   GLDI +  +V   D       RS +  +  IGR+ R     + L        
Sbjct: 322 IATDIAARGLDIEKLPVVINFD-----LPRSPSDYMHRIGRSGRAGEVGLALSLIDHDDL 376

Query: 697 IQLAIDE 703
               + E
Sbjct: 377 HHFNVIE 383


>gi|326634448|pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
          Length = 395

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L      V  +H +++T ER  +I D R G+  VL+  N+L  G
Sbjct: 247 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 306

Query: 646 LDIPECGLVAILDADKEGFLRSKTS-LIQTIGRAARNVNSKVI--LYADTITKSIQLAI 701
           +DIP   +V   D       ++  +  I  IGR  R     V      D  + +I  AI
Sbjct: 307 IDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAI 365


>gi|326634444|pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
 gi|326634446|pdb|3PEX|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
 gi|326634450|pdb|3PEZ|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
           And Adp
          Length = 395

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L      V  +H +++T ER  +I D R G+  VL+  N+L  G
Sbjct: 247 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 306

Query: 646 LDIPECGLVAILDADKEGFLRSKTS-LIQTIGRAARNVNSKVI--LYADTITKSIQLAI 701
           +DIP   +V   D       ++  +  I  IGR  R     V      D  + +I  AI
Sbjct: 307 IDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAI 365


>gi|307133003|ref|YP_003885019.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306530532|gb|ADN00463.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 428

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 78/236 (33%), Gaps = 35/236 (14%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNR 511
           L +Y          ++HV +  I  +   +  R   L   GF         R+PS     
Sbjct: 145 LIDY--------TKQNHVNMGAIQVVVLDEADRMYDL---GFIKDIRWLFRRMPSANQRL 193

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
            + F      R   +       +  +E   +     +I           ++R  +T +E+
Sbjct: 194 NMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEE 253

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
                    +   R ++   TK   ED+  +L     RV  +  +V   +R+ I+ D   
Sbjct: 254 ---------EWPDRCIIFANTKHRCEDIWGHLASDGHRVGLLTGDVAQKKRLRILEDFTQ 304

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           G  D+LV  ++   GL IP    V   D             +  IGR  R   S  
Sbjct: 305 GNLDILVATDVAARGLHIPAVTHVFNYD-----LPDDCEDYVHRIGRTGRAGASGC 355


>gi|226531524|ref|NP_001148960.1| ATP-dependent RNA helicase dhh1 [Zea mays]
 gi|195623636|gb|ACG33648.1| ATP-dependent RNA helicase dhh1 [Zea mays]
          Length = 517

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT             P  + +     + ++ I +    V+   ++         
Sbjct: 318 QILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKVH-------- 369

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   +    E L + + E      Y+H+++    R  +  D R 
Sbjct: 370 CLNTLFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 428

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F ++  + +  +GR+ R  +  + +  
Sbjct: 429 GACRNLVCTDLFTRGIDIQAVNVVINFD-----FPKNSETYLHRVGRSGRFGHLGLAVNL 483

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            T      L        R +Q    +   I PQ
Sbjct: 484 ITYEDRFNL-------YRIEQELGTEIKPIPPQ 509


>gi|195614632|gb|ACG29146.1| ATP-dependent RNA helicase dhh1 [Zea mays]
          Length = 517

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT             P  + +     + ++ I +    V+   ++         
Sbjct: 318 QILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKVH-------- 369

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   +    E L + + E      Y+H+++    R  +  D R 
Sbjct: 370 CLNTLFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 428

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F ++  + +  +GR+ R  +  + +  
Sbjct: 429 GACRNLVCTDLFTRGIDIQAVNVVINFD-----FPKNSETYLHRVGRSGRFGHLGLAVNL 483

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            T      L        R +Q    +   I PQ
Sbjct: 484 ITYEDRFNL-------YRIEQELGTEIKPIPPQ 509


>gi|126726299|ref|ZP_01742140.1| DEAD/DEAH box helicase [Rhodobacterales bacterium HTCC2150]
 gi|126704162|gb|EBA03254.1| DEAD/DEAH box helicase [Rhodobacterales bacterium HTCC2150]
          Length = 438

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 87/256 (33%), Gaps = 36/256 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L + +   ++   D  ++ + +              + + GF      D R +   
Sbjct: 126 TPGRLLDLLNRRAITLSDARYLVLDEAD-----------QMLDMGFI----HDLRKISTH 170

Query: 517 EWNCLRPTTIVVSAT-PGSW-ELEQCQGIIVEQI-IRPTGLVDPPV--EIRSA----RTQ 567
                   T++ SAT P    EL +       ++ + P G     V  E+       + Q
Sbjct: 171 LPEER--QTMMFSATMPKLMGELAETYLNSPLRVQVSPPGKAADKVTQEVHFMLQGDKGQ 228

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
              +   +    +   R L+   TK  AE L + L         +H      +R   + +
Sbjct: 229 --HLKKLLGNHRE--ERALVFSRTKHGAEKLKKGLVAVGFAAASIHGNKSQGQRTRALEE 284

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + G+  +LV  ++   G+DIP+   V   D           + +  IGR AR       
Sbjct: 285 FKSGEVKILVATDVAARGIDIPQVMYVYNYD-----LPNVPENYVHRIGRTARAGAEGTA 339

Query: 688 LYADTITKSIQ-LAID 702
           +   +  +  +  AI+
Sbjct: 340 IAFCSPDEMGELRAIE 355


>gi|330820807|ref|YP_004349669.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3]
 gi|327372802|gb|AEA64157.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3]
          Length = 459

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 82/245 (33%), Gaps = 17/245 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVE-----DVYDEI 575
           R  T++ SAT           I+ + +       +    +IR     V+     +++  +
Sbjct: 179 RRQTLLFSATFSDEIRAMAANILRKPVDISVSAPNATASKIRQWVVTVDKRNKPELFMHL 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                +    L+   T+   + L   L +    V  +H +     R+  +   +  +  +
Sbjct: 239 VAR-NKWEHALVFAKTRNGVDYLAAVLEQAGYAVDTIHGDKPQPARLRALERFKAREIQM 297

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   GLDI +  LV  +D             +  IGR  R   S V +       
Sbjct: 298 LVATDVAARGLDIDDLPLVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADE 352

Query: 695 KSIQLAIDETTR---RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                AI+   R   RRE++     +H   P++     +        +  A   +   A+
Sbjct: 353 APQLAAIEALIRQTLRREEEPGFEAEHR-VPETSASGELIKKPKKPKKPKAGQAVGQRAE 411

Query: 752 QLSLS 756
              + 
Sbjct: 412 VTGMD 416


>gi|326634440|pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
           H337r And Ip6
 gi|326634442|pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
           And Ip6
          Length = 188

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 3/119 (2%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L      V  +H +++T ER  +I D R G+  VL+  N+L  G
Sbjct: 40  IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 99

Query: 646 LDIPECGLVAILDADKEGFLRSKTS-LIQTIGRAARNVNSKVI--LYADTITKSIQLAI 701
           +DIP    V   D       ++  +  I  IGR  R     V      D  + +I  AI
Sbjct: 100 IDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAI 158


>gi|256852006|ref|ZP_05557393.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           27-2-CHN]
 gi|260661425|ref|ZP_05862338.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           115-3-CHN]
 gi|282931887|ref|ZP_06337366.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|297205122|ref|ZP_06922518.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           jensenii JV-V16]
 gi|256615418|gb|EEU20608.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           27-2-CHN]
 gi|260547880|gb|EEX23857.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           115-3-CHN]
 gi|281303998|gb|EFA96121.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|297149700|gb|EFH29997.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           jensenii JV-V16]
          Length = 484

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 78/199 (39%), Gaps = 13/199 (6%)

Query: 517 EWNCLRPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVED 570
           ++   R  T++ SAT   P     E+         I+   L    ++   +R+   +  D
Sbjct: 169 DFAQNREHTLLFSATMPKPILRIGEKFMKEPEIVQIKSKELTADLIDQYFVRAKEAEKFD 228

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +       L  ++   TKR  ++LT  L  R      +H ++   +R+ +++  + 
Sbjct: 229 IMCRLIDVQAPDL-AVVFGRTKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKN 287

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           GK D+LV  ++   GLDI     V   D       +   S +  IGR  R   + + + +
Sbjct: 288 GKLDILVATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRTGRAGKNGISVTF 342

Query: 690 ADTITKSIQLAIDETTRRR 708
                      I+  T+++
Sbjct: 343 VTPNEIGYMRTIENLTKKK 361


>gi|27363997|ref|NP_759525.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus CMCP6]
 gi|27360114|gb|AAO09052.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus CMCP6]
          Length = 408

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 77/212 (36%), Gaps = 21/212 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVEDVYDEINLAAQ 580
           R  T++ SAT    E +  +G   + +  P  +   P    R   TQ     D +     
Sbjct: 180 RKQTMLFSAT---LEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRADNMEHKLA 236

Query: 581 --------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                   Q  R ++ + T+    DL  +L    +   ++  E+    R   I   R G 
Sbjct: 237 LLKDIINNQAERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGS 296

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            +VL+  ++   G+D+P+   V   D  +     S    +  IGR AR       I   +
Sbjct: 297 VNVLLATDVAARGIDLPDVSHVVNFDMPR-----SADVYLHRIGRTARAGKKGNAISIVE 351

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
              + +   +D   R  ++ ++      + PQ
Sbjct: 352 AHDQPM---MDRVARYVKEDIKERFVKELRPQ 380


>gi|62289879|ref|YP_221672.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699806|ref|YP_414380.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
 gi|189024121|ref|YP_001934889.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237815373|ref|ZP_04594371.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
 gi|254697319|ref|ZP_05159147.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730216|ref|ZP_05188794.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 4 str. 292]
 gi|260545377|ref|ZP_05821118.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260757905|ref|ZP_05870253.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260761727|ref|ZP_05874070.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|62196011|gb|AAX74311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615907|emb|CAJ10911.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Brucella melitensis biovar Abortus 2308]
 gi|189019693|gb|ACD72415.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237790210|gb|EEP64420.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
 gi|260096784|gb|EEW80659.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260668223|gb|EEX55163.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260672159|gb|EEX58980.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
          Length = 482

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 16/191 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVED------VYD 573
            T+  SAT    E+ +     +   +R            V  R  ++  +D      + D
Sbjct: 180 QTLFFSAT-MPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRD 238

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I          ++    K+   +L   L         +H ++    R+ ++   + GK 
Sbjct: 239 LIQSEGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKL 298

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIP+   V   D             +  IGR  R   S       T 
Sbjct: 299 RLLVASDVAARGLDIPDVSHVFNFDVPI-----HAEDYVHRIGRTGRAGRSGKAFTIVTS 353

Query: 694 TKSIQLAIDET 704
           + +  LA  E+
Sbjct: 354 SDTKYLAAIES 364


>gi|302543182|ref|ZP_07295524.1| putative ATP-dependent RNA helicase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460800|gb|EFL23893.1| putative ATP-dependent RNA helicase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 498

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 17/157 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D +      A +  R+++ + TK   + LT++L    +R   +H      +R   +   +
Sbjct: 286 DKHATTTEIAARDGRVIMFLDTKHAVDKLTQHLLNSGVRAAALHGGKSQPQRTRTLAQFK 345

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ +    LV  +D   +         +   GR AR   S  ++ 
Sbjct: 346 TGDVTVLVATNVAARGIHVDNLDLVVNVDPPGD-----HKDYLHRGGRTARAGESGSVVT 400

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
                +           RR+     +    I P + K
Sbjct: 401 LVLPGQ-----------RRDMTRLMSTA-GITPHTTK 425


>gi|301778305|ref|XP_002924562.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Ailuropoda
           melanoleuca]
          Length = 935

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 433 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 492

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 493 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 606

Query: 696 S 696
           S
Sbjct: 607 S 607


>gi|300193450|gb|ADJ68231.1| DEAD box RNA helicase [Populus alba x Populus tremula var.
           glandulosa]
          Length = 492

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 10/166 (6%)

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
            L    V +     ++  V D I    +   +I++ V TKR A  L   L +    V  +
Sbjct: 309 SLKQYKVILPDELAKIGVVKDRILELGENIGQIIIFVNTKRSASMLHTSLVDLGYEVTTI 368

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS-- 670
           H  +   +R +I+++ + G   VL+  ++L  G D  +  LV   D   +   +S+    
Sbjct: 369 HGALNLEDRDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKYENQSEPHYE 428

Query: 671 -LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
             +  IGRA R      +         + +        R+ +   N
Sbjct: 429 VYLHRIGRAGRFGRKGAVFNFIMTDHDLMIM-------RKIESYFN 467


>gi|281351661|gb|EFB27245.1| hypothetical protein PANDA_013938 [Ailuropoda melanoleuca]
          Length = 940

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 438 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 497

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 498 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 556

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 557 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 611

Query: 696 S 696
           S
Sbjct: 612 S 612


>gi|257097239|pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
           Dbp5
          Length = 189

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 3/119 (2%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L      V  +H +++T ER  +I D R G+  VL+  N+L  G
Sbjct: 41  IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 100

Query: 646 LDIPECGLVAILDADKEGFLRSKTS-LIQTIGRAARNVNSKVI--LYADTITKSIQLAI 701
           +DIP    V   D       ++  +  I  IGR  R     V      D  + +I  AI
Sbjct: 101 IDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAI 159


>gi|218184840|gb|EEC67267.1| hypothetical protein OsI_34232 [Oryza sativa Indica Group]
          Length = 524

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT             P  + +     + ++ I +    V+   ++         
Sbjct: 325 QLLMFSATFPVTVKDFKEKYLPRPYVINLMDELTLKGITQYYAFVEERQKVH-------- 376

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   +    E L + + E      Y+H+++    R  +  D R 
Sbjct: 377 CLNTLFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 435

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F ++  + +  +GR+ R  +  + +  
Sbjct: 436 GACRNLVCTDLFTRGIDIQAVNVVINFD-----FPKTSETYLHRVGRSGRFGHLGLAVNL 490

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            T      L        R +Q    +   I PQ
Sbjct: 491 ITYEDRFNL-------YRIEQELGTEIKTIPPQ 516


>gi|170750207|ref|YP_001756467.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656729|gb|ACB25784.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 506

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 6/127 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R+L+   TK  A+ +   L +  I    +H      +R   +   + G   VLV  ++ 
Sbjct: 246 ERVLVFTRTKHGADRVVRGLDKVGIAAAAIHGNKSQPQRERALAAFKDGSCRVLVATDIA 305

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             G+D+     V   D           S +  IGR AR       I + +   K+    I
Sbjct: 306 ARGIDVEGVSHVVNFD-----LPNVPESYVHRIGRTARAGADGLAISFCNDEEKAYLRDI 360

Query: 702 DETTRRR 708
           +  TR++
Sbjct: 361 ERVTRQK 367


>gi|158514833|sp|A3LSN3|DRS1_PICST RecName: Full=ATP-dependent RNA helicase DRS1
          Length = 741

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 96/269 (35%), Gaps = 30/269 (11%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRP-----TGLVDPPVEIRSARTQVEDVYD 573
           +  T++ SAT        ++      V  +I P     T L    V IR        +  
Sbjct: 401 KRQTLLFSATMNTKIQDLIQLSLQRPVRIMIDPPKTAATKLTQEFVRIRKRDHLKPALLF 460

Query: 574 EINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           ++       Q  RI++ V  K  A  L   L    ++V  +H  +   +R+  + D +  
Sbjct: 461 QLLKKLDPAQQSRIVVFVSRKESAHKLRIVLGLLGMKVSELHGSLTQEQRLNNVNDFKKL 520

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
              VL+  +L   GLDIP+  +V   D  K     S    +  +GR AR           
Sbjct: 521 IVPVLICTDLAARGLDIPKIEIVINYDMPK-----SHEVYLHRVGRTARAGRDGT----- 570

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED-AATTNISIDA 750
               SI    + T+ R   +           +   + +   ID + +E          + 
Sbjct: 571 ----SISFVGESTSDRNIVKDAIKSLEGGEVKG--KAVSRNIDWVDVEQLNKIVESKQEI 624

Query: 751 QQLSLSKKKGKAHLKSLRKQMHLA-ADNL 778
            +  L ++K    +  L+ +M LA A N+
Sbjct: 625 IEEVLDEEKQAKEI--LQAEMQLAKASNM 651


>gi|119614682|gb|EAW94276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Homo
           sapiens]
          Length = 828

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 323 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 382

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 383 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 441

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 442 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 496

Query: 696 S 696
           S
Sbjct: 497 S 497


>gi|143360935|sp|Q109G2|RH12_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 12
 gi|10140782|gb|AAG13612.1|AC078840_3 putative RNA helicase [Oryza sativa Japonica Group]
 gi|110289357|gb|ABB47852.2| ATP-dependent RNA helicase ste13, putative, expressed [Oryza sativa
           Japonica Group]
 gi|215706425|dbj|BAG93281.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222613101|gb|EEE51233.1| hypothetical protein OsJ_32082 [Oryza sativa Japonica Group]
          Length = 521

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT             P  + +     + ++ I +    V+   ++         
Sbjct: 322 QLLMFSATFPVTVKDFKEKYLPRPYVINLMDELTLKGITQYYAFVEERQKVH-------- 373

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   +    E L + + E      Y+H+++    R  +  D R 
Sbjct: 374 CLNTLFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 432

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F ++  + +  +GR+ R  +  + +  
Sbjct: 433 GACRNLVCTDLFTRGIDIQAVNVVINFD-----FPKTSETYLHRVGRSGRFGHLGLAVNL 487

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            T      L        R +Q    +   I PQ
Sbjct: 488 ITYEDRFNL-------YRIEQELGTEIKTIPPQ 513


>gi|16765963|ref|NP_461578.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62181218|ref|YP_217635.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161612638|ref|YP_001586603.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167553669|ref|ZP_02347416.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994856|ref|ZP_02575946.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232171|ref|ZP_02657229.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238338|ref|ZP_02663396.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168245094|ref|ZP_02670026.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261356|ref|ZP_02683329.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168468057|ref|ZP_02701894.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168823169|ref|ZP_02835169.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444674|ref|YP_002041910.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451369|ref|YP_002046652.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194469312|ref|ZP_03075296.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736243|ref|YP_002115655.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197251182|ref|YP_002147547.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263960|ref|ZP_03164034.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198245924|ref|YP_002216658.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389167|ref|ZP_03215779.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929439|ref|ZP_03220513.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205353686|ref|YP_002227487.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857997|ref|YP_002244648.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224584498|ref|YP_002638296.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912708|ref|ZP_04656545.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16421193|gb|AAL21537.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62128851|gb|AAX66554.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161362002|gb|ABX65770.1| hypothetical protein SPAB_00333 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403337|gb|ACF63559.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409673|gb|ACF69892.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194455676|gb|EDX44515.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711745|gb|ACF90966.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195628861|gb|EDX48275.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197214885|gb|ACH52282.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197242215|gb|EDY24835.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288867|gb|EDY28240.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197940440|gb|ACH77773.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199606265|gb|EDZ04810.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321158|gb|EDZ06358.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273467|emb|CAR38444.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205321947|gb|EDZ09786.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327350|gb|EDZ14114.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333649|gb|EDZ20413.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336132|gb|EDZ22896.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205340544|gb|EDZ27308.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349536|gb|EDZ36167.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709800|emb|CAR34152.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224469025|gb|ACN46855.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261247841|emb|CBG25670.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994784|gb|ACY89669.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159194|emb|CBW18709.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913637|dbj|BAJ37611.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085536|emb|CBY95315.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225998|gb|EFX51051.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613360|gb|EFY10302.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620436|gb|EFY17301.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625096|gb|EFY21925.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629460|gb|EFY26236.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633847|gb|EFY30586.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635453|gb|EFY32164.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639871|gb|EFY36550.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644243|gb|EFY40787.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649935|gb|EFY46355.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654882|gb|EFY51199.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658190|gb|EFY54456.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322661738|gb|EFY57956.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669719|gb|EFY65865.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673274|gb|EFY69379.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322674937|gb|EFY71024.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682960|gb|EFY78978.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685621|gb|EFY81616.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715706|gb|EFZ07277.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323130981|gb|ADX18411.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323191951|gb|EFZ77189.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200416|gb|EFZ85497.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201315|gb|EFZ86382.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208386|gb|EFZ93326.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211538|gb|EFZ96376.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215970|gb|EGA00702.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221751|gb|EGA06159.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225641|gb|EGA09868.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229359|gb|EGA13483.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235326|gb|EGA19410.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237488|gb|EGA21551.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245243|gb|EGA29244.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246468|gb|EGA30449.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254001|gb|EGA37823.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259051|gb|EGA42699.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261974|gb|EGA45539.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267757|gb|EGA51238.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269684|gb|EGA53136.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624414|gb|EGE30759.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326628791|gb|EGE35134.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332989572|gb|AEF08555.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 444

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +VLV  ++  
Sbjct: 250 RSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ--LAI 701
            G+DIP+   V   D  + G   +    I   GRA R   +  ++ A      ++    I
Sbjct: 310 RGIDIPDVSHVINFDMPRSG--DTYLHRIGRTGRAGRKGTAISLVEAHDHLLLLKIGRYI 367

Query: 702 DETTRRREK 710
           +E  + R  
Sbjct: 368 EEPLKARVI 376


>gi|16761502|ref|NP_457119.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29140801|ref|NP_804143.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213420579|ref|ZP_03353645.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213425267|ref|ZP_03358017.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213585704|ref|ZP_03367530.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213616277|ref|ZP_03372103.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213646345|ref|ZP_03376398.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854910|ref|ZP_03383150.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25385254|pir||AD0830 ATP-dependent RNA helicase SrmB [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503802|emb|CAD02792.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136426|gb|AAO67992.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 444

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +VLV  ++  
Sbjct: 250 RSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ--LAI 701
            G+DIP+   V   D  + G   +    I   GRA R   +  ++ A      ++    I
Sbjct: 310 RGIDIPDVSHVINFDMPRSG--DTYLHRIGRTGRAGRKGTAISLVEAHDHLLLLKIGRYI 367

Query: 702 DETTRRREK 710
           +E  + R  
Sbjct: 368 EEPLKARVI 376


>gi|116493289|ref|YP_805024.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC
           25745]
 gi|116103439|gb|ABJ68582.1| Superfamily II DNA and RNA helicase [Pediococcus pentosaceus ATCC
           25745]
          Length = 526

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 98/264 (37%), Gaps = 29/264 (10%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQ--IIRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT P   +    + +   +   ++   L    V+   +RS   +  D+   +  
Sbjct: 176 QTLLFSATMPAPIKKIGVKFMTDPKQITVKSKELTADLVDQYYVRSKEFEKFDILTRVLD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                L  ++   TKR  +++++ L  R      +H ++    R+ I+R  R G+ D+LV
Sbjct: 236 VQAPKL-AVIFGRTKRRVDEVSKGLVTRGYNAAGIHGDLTQQRRMSILRQFREGQLDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R   +   + +       
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGATGTSVTFVTNWEMD 349

Query: 697 IQLAIDETTRRR---------------EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
               ++  T++R                  +       +  ++   K  E +D +L +  
Sbjct: 350 YLRDVEHLTKKRLLPMKPPTEEEAFAGRAAMAEQSIEELVQKTDVAKFEEQVDHLLEQHD 409

Query: 742 ATTNISIDAQQLSLSKK-KGKAHL 764
           A T ++    +++ S   + K  +
Sbjct: 410 AKTLVAALLNEVTKSDASEIKVKI 433


>gi|254693665|ref|ZP_05155493.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 3 str. Tulya]
 gi|261213932|ref|ZP_05928213.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|260915539|gb|EEX82400.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
          Length = 482

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 16/191 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVED------VYD 573
            T+  SAT    E+ +     +   +R            V  R  ++  +D      + D
Sbjct: 180 QTLFFSAT-MPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRD 238

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I          ++    K+   +L   L         +H ++    R+ ++   + GK 
Sbjct: 239 LIQSEGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKL 298

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIP+   V   D             +  IGR  R   S       T 
Sbjct: 299 RLLVASDVAARGLDIPDVSHVFNFDVPI-----HAEDYVHRIGRTGRAGRSGKAFTIVTS 353

Query: 694 TKSIQLAIDET 704
           + +  LA  E+
Sbjct: 354 SDTKYLAAIES 364


>gi|195941443|ref|ZP_03086825.1| transcription-repair coupling factor (mfd) [Borrelia burgdorferi
           80a]
          Length = 1125

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 101/268 (37%), Gaps = 22/268 (8%)

Query: 173 LLGVTGSGKTFTMAKV--IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L G  G  K F + K+       +  +++     L      + KN       + F   Y 
Sbjct: 32  LTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTL-----DKIKNDLQVITNQIFELNY- 85

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
            + P  Y         K +  NE+I  +         +     +    S +  I    + 
Sbjct: 86  -FSPLVYKG----IGSKSTIFNERIKFL----INFYKKNPGIYITVLKSLLSKIPDKNTL 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            + I +++   ++   ++  +L+   Y++     I G F V G+ I+I+P   E    R+
Sbjct: 137 LKNIYKIEKNTNINTADIEKTLITLGYEKTLRVTIPGEFTVKGEIIDIYP-FGEQNPIRI 195

Query: 351 SMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKE-ELKMRLI 408
           ++  + IEEI +F PLT  K    +   +I      +    T+NT    IK  E K  L 
Sbjct: 196 ALNFDKIEEIKKFNPLTQLKHDNEILEFQILPKKEIIWDDKTINTLKTKIKSVEYKKILE 255

Query: 409 E--LEKEGRLLEAQRLEQRITYDLEMLE 434
           E   +KE +  E        TY  + +E
Sbjct: 256 ELDFKKETKTEEMFYPLVTNTYLSDEIE 283



 Score = 47.0 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 22/190 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +     I P   V     + S    +  +   I     +
Sbjct: 733 CLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESFSELL--IKHAIESELSR 790

Query: 582 GLRILL-------TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             ++ L           K + E LT Y      R+  +H ++   E   I+ +     + 
Sbjct: 791 DGQVFLVNHNIEELYYLKTLIERLTPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQ 845

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  G+DIP    + I +A+K G  +    L Q  GR  R        +    +
Sbjct: 846 ILLATTIIENGIDIPNANTIIINNANKFGLAQ----LYQLKGRVGRGSQKAYAYFLYQDS 901

Query: 695 KSI-QLAIDE 703
           + + + +I+ 
Sbjct: 902 EKLNERSIER 911


>gi|148702333|gb|EDL34280.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_b [Mus
           musculus]
          Length = 1012

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 516 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 575

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 576 VEFTSSG-SVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 634

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 635 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 689

Query: 696 S 696
           S
Sbjct: 690 S 690


>gi|169844029|ref|XP_001828736.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
 gi|116510107|gb|EAU93002.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
          Length = 754

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 23/257 (8%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRP-----TGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT        ++      V   + P      GL+   V IR    +   +    
Sbjct: 355 QTMLFSATMTDSVDELIKMSLNKPVRLFVDPKRSTARGLIQEFVRIRKESDRPAMLVALC 414

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +   ++++ V +K++A  +        ++   +H ++   +R++ ++  R G  D 
Sbjct: 415 KQTYKH--KVIIFVRSKKLAHQMRIVFSLLGMKCAELHGDLSQEQRLQALQSFREGSVDY 472

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  +L   GLDI     V   D    G +      +    RA R   S V L  +   K
Sbjct: 473 LMATDLASRGLDIKGVETVVNYDMP--GQMAQYLHRVGRTARAGRKGKS-VTLVGEADRK 529

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
            ++ AI       E Q+    +  +   +V +K  + ++ +  E A       + +QL  
Sbjct: 530 LLKAAIKHAAG--EDQV----RQRVLDTTVVQKYADKLEGLKGEIAEVMREEKEEKQL-- 581

Query: 756 SKKKGKAHLKSLRKQMH 772
             ++ +  L      M 
Sbjct: 582 --RQAEMELTKGENMMK 596


>gi|50293977|ref|XP_449400.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528714|emb|CAG62376.1| unnamed protein product [Candida glabrata]
          Length = 682

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 89/235 (37%), Gaps = 39/235 (16%)

Query: 574 EINLAAQQGLRI-LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            +    +  ++  LL  +     E L  Y  ER I+ + + S+    +R + IRD++ G+
Sbjct: 264 YLEKRKENNIKSSLLFGVDINHIECLERYFNERGIKAKAVSSKTSVEDRQKAIRDIKSGE 323

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            +VL+   +  EG DIP    + +    K     S+T L+Q IGR  R  +SK   +   
Sbjct: 324 LEVLLNCGIFTEGTDIPNIDCILLCRPTK-----SRTLLVQMIGRGLRLHHSKEYCHIID 378

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSV-KEKIMEVIDPILLEDAATTNISIDAQ 751
              S +  +                    P  +  E   +  D   LE+     +  + +
Sbjct: 379 FVGSTKAGVVS-----------------VPSLLGIESCEDTFDNATLEELRKIKLEEETR 421

Query: 752 QLSLSKKKGKAHL-KSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDDS 805
                + + +A L K   ++M              +R+++ +++ +       D+
Sbjct: 422 MAEYQQMQTQAELQKRAHEEM--------------LRNQLNKMEQTLLEVSHGDA 462


>gi|148543481|ref|YP_001270851.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           reuteri DSM 20016]
 gi|184152890|ref|YP_001841231.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
 gi|227363631|ref|ZP_03847746.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           MM2-3]
 gi|227544701|ref|ZP_03974750.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           CF48-3A]
 gi|300909057|ref|ZP_07126520.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri SD2112]
 gi|325681826|ref|ZP_08161345.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri MM4-1A]
 gi|148530515|gb|ABQ82514.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri DSM
           20016]
 gi|183224234|dbj|BAG24751.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
 gi|227071342|gb|EEI09650.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           MM2-3]
 gi|227185302|gb|EEI65373.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           CF48-3A]
 gi|300894464|gb|EFK87822.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri SD2112]
 gi|324978917|gb|EGC15865.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri MM4-1A]
          Length = 498

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 93/262 (35%), Gaps = 17/262 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVE---IRSARTQVEDVYDEIN 576
            T++ SAT    E+++     +       I+   L    V+   IR+   +  D+   + 
Sbjct: 176 QTLLFSAT-MPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYIRARDYEKFDIMTRLI 234

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                 L  ++   TKR  ++L++ L  R      +H ++   +R +I+   +  + D+L
Sbjct: 235 DVQDPDL-TIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDIL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK- 695
           V  ++   GLDI     V   D           S +  IGR  R  +  V L   T  + 
Sbjct: 294 VATDVAARGLDISGVTHVYNYD-----IPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEM 348

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
                I++ TR R   L+           V     ++ + I  +       + +    + 
Sbjct: 349 DYLHEIEKLTRVRMLPLKPPTAEEAFKGQVASAFNDIDELIAQDSTDRYEEAAEKLLETH 408

Query: 756 SKKKGKAHLKSLRKQMHLAADN 777
           +     A L  L      AA  
Sbjct: 409 NATDLVAAL--LNNMTKEAASE 428


>gi|299829298|ref|NP_001005895.2| ATP-dependent RNA helicase DDX19B [Rattus norvegicus]
          Length = 479

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 269 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNREEKFQ 322

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 323 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 382

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 383 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 441

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 442 MVDSKHSMNIL----NR---IQEHFNKK 462


>gi|297624335|ref|YP_003705769.1| DEAD/DEAH box helicase domain-containing protein [Truepera
           radiovictrix DSM 17093]
 gi|297165515|gb|ADI15226.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM
           17093]
          Length = 526

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 85/246 (34%), Gaps = 22/246 (8%)

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           VD     + Q+S +          +   GF      D   L           T++ SAT 
Sbjct: 131 VDYYKQGVLQLSRVEVAVLDEADEMLNAGFE----EDVELLLAATPQER--QTLLFSATL 184

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPV---EIR---SARTQVEDVYDEINLAAQQGLRIL 586
             W  E      +   +R     D  V   E+       +++  + D ++         +
Sbjct: 185 PRW-AESLAARHLRDPLRANVTSDESVSYDEVAIEAPLASRLGVLSDVLH--VHGTGASI 241

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +   TK   ++L + L         +H ++  ++R  ++   R  +  VLV  ++   GL
Sbjct: 242 VFTRTKAEVDELAKALTSLGHLAEAVHGDLNQVQRERVLERFRASQVTVLVATDVAARGL 301

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE--T 704
           DIPE  LV         F           GR  R   +  ++   +  +  +LA+ E   
Sbjct: 302 DIPEVDLVV-----HYRFPEQPERYQHRSGRTGRAGRAGTVVLLYSPRERRELALLERAI 356

Query: 705 TRRREK 710
            RR E+
Sbjct: 357 ARRIER 362


>gi|282880318|ref|ZP_06289032.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305820|gb|EFA97866.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           timonensis CRIS 5C-B1]
          Length = 583

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 13/168 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS------ARTQVEDVYDEINL 577
            TI+ SAT    ++      +++  +     V  P E            Q   + ++I  
Sbjct: 183 QTIMFSAT-MPDKINDLARTLLKNPVEIKLAVSKPAEKIKQCAYICYEAQKLKIIEDIFK 241

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                 R+++   +K   + +   L+  N+    MHS+++  +R E++ + + G+ DVLV
Sbjct: 242 KGDLK-RVIVFCGSKLKVKQVAAALHRMNVNCSEMHSDLEQAQRDEVMLNFKSGQLDVLV 300

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             +++  G+DI +  +V   D             +  IGR AR     
Sbjct: 301 ATDIVARGIDIDDISMVINYDV-----PNDAEDYVHRIGRTARADRDG 343


>gi|254519619|ref|ZP_05131675.1| DEAD/DEAH box helicase domain-containing protein [Clostridium sp.
           7_2_43FAA]
 gi|226913368|gb|EEH98569.1| DEAD/DEAH box helicase domain-containing protein [Clostridium sp.
           7_2_43FAA]
          Length = 370

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 71/188 (37%), Gaps = 18/188 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII------RPTGLVDPPVEIRSART--QVEDVYDEI 575
            T+  SAT  S   +     +    I        + + +   E+       +V+ +   +
Sbjct: 175 QTLCFSATIDSKVKKLAYRYMNNPTIIDITENEESEIPNIKQEVVKTTDRWKVDALVKIL 234

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                     ++   TKR A++L   L  + I+   +HS+V   +R +I++  R  +   
Sbjct: 235 EE--DNPFMSIIFCRTKRRADELEVKLAAKGIKAAKIHSDVPQNKREKIMKSFRDCEIQF 292

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   G+D+     +   DA       S  S I  IGR AR  +S    Y   IT 
Sbjct: 293 LIATDVASRGIDVTGVTHIYNYDA-----PESVESYIHRIGRTARAGDSG---YTCLITD 344

Query: 696 SIQLAIDE 703
                I E
Sbjct: 345 PKNYTILE 352


>gi|198283274|ref|YP_002219595.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667828|ref|YP_002425861.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198247795|gb|ACH83388.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520041|gb|ACK80627.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 418

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 68/193 (35%), Gaps = 10/193 (5%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINL 577
            +   ++ SAT          G++       +         V  R      +   + ++ 
Sbjct: 181 KKRQNLLFSATFSPEIRGLADGLLNNPTSVEVAARNATADNVAQRVFAVDQDRKRELLSH 240

Query: 578 AAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             ++    ++L+   TK  A+ L  +L +  ++   +H +     R   + + + GK  V
Sbjct: 241 LIEEHQWGQVLVFTRTKHGADRLARHLSQDGMQAMAIHGDKSQGARTRALAEFKEGKVQV 300

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   G+DI E   V   +             +  IGR  R  N+   +   +  +
Sbjct: 301 LVATDIAARGIDISELPHVVNFE-----LPHVPEDYVHRIGRTGRAGNNGQAVSLVSSEE 355

Query: 696 SIQLAIDETTRRR 708
             QL   E   RR
Sbjct: 356 RKQLQDVEKLLRR 368


>gi|153826515|ref|ZP_01979182.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2]
 gi|149739695|gb|EDM53902.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2]
          Length = 423

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 89/257 (34%), Gaps = 35/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L EY        +D        I  +   +  R     + GF  P+   +R     
Sbjct: 132 TPGRLLEY--------IDAERFDCRAIEWLILDEADRM---LDMGFG-PTV--DRLSTEC 177

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEI 575
            W   R  T++ SAT    E    +G   + +  P     +PP   R   +Q     D++
Sbjct: 178 RW---RKQTLLFSAT---LEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDM 231

Query: 576 NLAAQ--------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
               +        Q  R ++ + T+    DL   L +  I   ++  E+    R   I  
Sbjct: 232 PHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISR 291

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV- 686
            R G  ++L+  ++   G+D+P+   V   D       RS    +  IGR  R     + 
Sbjct: 292 FREGDVNILLATDVAARGIDVPDISHVINFD-----LPRSADVYLHRIGRTGRAGKKGIA 346

Query: 687 ILYADTITKSIQLAIDE 703
           I   +   + +   ++ 
Sbjct: 347 ISLVEAHDQPMMARVER 363


>gi|114641149|ref|XP_508848.2| PREDICTED: ATP-dependent RNA helicase DDX25 isoform 2 [Pan
           troglodytes]
 gi|119588073|gb|EAW67669.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 25, isoform CRA_b [Homo
           sapiens]
 gi|133777017|gb|AAH35388.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 [Homo sapiens]
 gi|133777056|gb|AAH50360.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 [Homo sapiens]
 gi|189053471|dbj|BAG35637.1| unnamed protein product [Homo sapiens]
          Length = 369

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 72/208 (34%), Gaps = 25/208 (12%)

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GF   S    R L  E         ++ SAT      E       E+II    ++    E
Sbjct: 143 GFSDHSIRIQRALPSEC------QMLLFSAT-----FEDSVWHFAERIIPDPNVIKLRKE 191

Query: 561 IRSARTQVEDVYDEINLAAQQGL------------RILLTVLTKRMAEDLTEYLYERNIR 608
                  +   Y        +              + ++   T+R A+ LT  + +   +
Sbjct: 192 -ELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQ 250

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD-KEGFLRS 667
           V  +  E+   +R  II+  R GK  VL+  N+   G+D+ +  +V   D   K+G    
Sbjct: 251 VSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPD 310

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITK 695
             + +  IGR  R     +      + +
Sbjct: 311 YETYLHRIGRTGRFGKKGLAFNMIEVDE 338


>gi|73957028|ref|XP_861958.1| PREDICTED: similar to ATP-dependent RNA helicase DDX19 (DEAD-box
           protein 19) (DEAD-box RNA helicase DEAD5) isoform 3
           [Canis familiaris]
 gi|73957030|ref|XP_861987.1| PREDICTED: similar to ATP-dependent RNA helicase DDX19 (DEAD-box
           protein 19) (DEAD-box RNA helicase DEAD5) isoform 4
           [Canis familiaris]
          Length = 370

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 160 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNRDEKFQ 213

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 214 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 273

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 274 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 332

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 333 MVDSKHSMNIL----NR---IQEHFNKK 353


>gi|327349044|gb|EGE77901.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis ATCC 18188]
          Length = 644

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 6/138 (4%)

Query: 568 VEDVYDEIN-LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + D+        A++    L+  +     + LTE      I  RY+ S+     R   + 
Sbjct: 270 INDITVRAWLSRARERKSTLVFGVDIEHVKCLTERFRRFGIDARYITSQTPKDLRTNELE 329

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R  ++ VLV   L  EG DIP    V +    +     SK  LIQ IGR  R    K 
Sbjct: 330 AFRNQEYPVLVNCGLFTEGTDIPNIDCVLLARPTR-----SKNLLIQMIGRGLRLYPGKK 384

Query: 687 ILYADTITKSIQLAIDET 704
             +   +  S+   +  T
Sbjct: 385 NCHIIDMVASLDTGVTTT 402


>gi|300721423|ref|YP_003710694.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus nematophila ATCC 19061]
 gi|297627911|emb|CBJ88457.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus nematophila ATCC 19061]
          Length = 427

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 108/343 (31%), Gaps = 69/343 (20%)

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE---ELKMRLIELEKEGRLLEAQRLE 423
           TG+ +  + +   Y  +H       +N     I     EL +++        L E   L+
Sbjct: 57  TGKTLAFLASTFHYLLTHPAGKERKINQPRALIMAPTRELAVQI--YSDAKELAEVTGLK 114

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPT--LFEYIPEDSLLFVDESHVTIP 481
             + Y              +   + L          T  L +Y          + H+ + 
Sbjct: 115 MGLAY---------GGDGYDKQLKVLESGVDIVIGTTGRLIDY--------AKQGHIHLG 157

Query: 482 QISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEE----------WNCLR 522
            I  +   +  R   L   GF         R+P+  +   L F            +  + 
Sbjct: 158 AIQVVVLDEADRMYDL---GFIKDIRWLFRRIPAATERLNLLFSATLSYRVRELAFEQM- 213

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
                V   P    L++    I E++  P+      +        ++ + +E        
Sbjct: 214 NNPEYVEVEP----LQKTGHRIREELFYPSNEEKMRL--------LQTLLEEEWP----- 256

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++   TK   ED+  +L     RV  +  +V   +R+ I+ +  LG  D+LV  ++ 
Sbjct: 257 DRCIIFANTKHRCEDIWTHLAADGHRVGLLTGDVAQKKRLRILEEFSLGNLDILVATDVA 316

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             GL IP    V   D             +  IGR  R   S 
Sbjct: 317 ARGLHIPSVTHVFNYD-----LPDDCEDYVHRIGRTGRAGESG 354


>gi|168037441|ref|XP_001771212.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677453|gb|EDQ63923.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 481

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 112/299 (37%), Gaps = 39/299 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P TL  ++ +D  L  D  HV   ++      D      L + GF+  S    R +   
Sbjct: 202 TPGTLKRWMTKDKAL--DTRHV---KVLVFDEADQ----MLDQDGFQDDSLRLWRDINRS 252

Query: 517 EWNCLRPTTIVVSATPGSW-------ELEQCQGIIVEQIIRPTGLVDPPVEIRSAR-TQV 568
             NC     ++ SAT            + +   I VE+      ++     +     +++
Sbjct: 253 GGNC---QVLLFSATFSDKVKSFAMKTIPKANYIFVEKEQLSLDVIRQYQIVCPTTASKI 309

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + + D I  AA++  + ++ V T+  A +L + L E   +   +   +   ER  +I++ 
Sbjct: 310 DVLKDRIFPAAEKLGQSIIFVRTRGAASELHKSLEEDGFKCTSIQGGLTHEERDRVIKEF 369

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL-------RSKTSLIQTIGRAARN 681
           R G+  +L+  ++L  G D  +  LV   D   +              + +  IGR+ R 
Sbjct: 370 RAGETKILIATDVLARGFDQAQVTLVVNYDFPVKNTTSRHAYAEPDYETYLHRIGRSGRF 429

Query: 682 VNSKVILYADTITKSIQLAIDETTRR-REKQLEHNKKHNINPQSVKEKIMEVIDPILLE 739
                               +E  R  R+ +   N+   I P+ V    ++ I+ +L +
Sbjct: 430 GRKGAAFNLLVT--------EEDKRNLRKIEQHFNR---IIPEVVAWNNIDDIEKVLQD 477


>gi|309810396|ref|ZP_07704230.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185]
 gi|308435636|gb|EFP59434.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185]
          Length = 537

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   I  A  +GL  ++   TKR A  +++ L  R      +H ++    R + +R  R
Sbjct: 274 EMLARILQAKDRGL-TIIFSRTKRTAAKVSDELISRGFAAAPLHGDLGQGAREQALRAFR 332

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GK DVLV  ++   G+D+ +   V             + + +  IGR  R   + + + 
Sbjct: 333 SGKVDVLVATDVAARGIDVEDVTHVINYQC-----PEDEKTYVHRIGRTGRAGKTGIAVT 387

Query: 690 ADTITKSIQLAI 701
                   + A+
Sbjct: 388 LVDWDDLHRWAL 399


>gi|213023601|ref|ZP_03338048.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 359

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 2/110 (1%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +VLV  ++  
Sbjct: 250 RSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            G+DIP+   V   D  + G   +    I   GRA R   +  ++ A   
Sbjct: 310 RGIDIPDVSHVINFDMPRSG--DTYLHRIGRTGRAGRKGTAISLVEAHDH 357


>gi|323450835|gb|EGB06714.1| hypothetical protein AURANDRAFT_28650 [Aureococcus anophagefferens]
          Length = 482

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 21/192 (10%)

Query: 521 LRPTTIVVSATPGSW------------ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
            RP T++ SAT  SW            EL    G   +Q    T +    V +       
Sbjct: 288 RRPQTLLFSATTPSWVKKLTSKYLEDPELVDVVGDARQQ--AATTVTHKAVLVPRGPDAR 345

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             + ++I  AAQ G R+++   TK+  ++L      + +  + +H ++   +R   +   
Sbjct: 346 ASLLEDIIAAAQGGGRVIVFTSTKKECDELAGGPAFQRLAAQVLHGDIGQAQRETTLAQF 405

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--V 686
           R G F VLV  ++   G+D+    LV      ++         +   GR  R       V
Sbjct: 406 RRGAFTVLVATDVAARGIDVKGVDLVVQYRTPRD-----AEGYVHRSGRTGRAGRDGTAV 460

Query: 687 ILYADTITKSIQ 698
           +LY +   + ++
Sbjct: 461 VLYDEREERDVR 472


>gi|311266965|ref|XP_003131337.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
           DDX42-like [Sus scrofa]
          Length = 941

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 433 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 492

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 493 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 606

Query: 696 S 696
           S
Sbjct: 607 S 607


>gi|255081756|ref|XP_002508100.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
 gi|226523376|gb|ACO69358.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
          Length = 464

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 5/127 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  D R G    LV  +L   G
Sbjct: 331 IIFCNSVNRVELLAKKITELGYSCFYIHAKMMQSHRNRVFHDFRNGACRNLVSSDLFTRG 390

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +DI    +V   D     F ++  + +  +GR+ R  +  + +   T      L   E  
Sbjct: 391 IDIQSVNVVINFD-----FPKNSETYLHRVGRSGRFGHLGISVNLITYDDRFNLFRIEKE 445

Query: 706 RRREKQL 712
              E Q 
Sbjct: 446 LGTEIQQ 452


>gi|169630612|ref|YP_001704261.1| ATP-dependent DEAD-box RNA helicase [Mycobacterium abscessus ATCC
           19977]
 gi|169242579|emb|CAM63607.1| Probable ATP-dependent DEAD-box RNA helicase [Mycobacterium
           abscessus]
          Length = 490

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 7/134 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++   I  A  +G   ++   TKR A+ +++ L ER   V  +H ++  + R + +   R
Sbjct: 249 ELVSRILQADGRG-ATMIFTRTKRTAQKVSDELAERGFAVGAVHGDLGQIAREKALTSFR 307

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
            G+ +VLV  ++   G+DI +   V               + +  IGR  R   + + + 
Sbjct: 308 SGQINVLVATDVAARGIDIDDVTHVINY-----QCPEDDKTYVHRIGRTGRAGRTGIAVT 362

Query: 689 YADTITKSIQLAID 702
             D    +    ID
Sbjct: 363 LVDWDDIARWQLID 376


>gi|109116835|ref|XP_001116381.1| PREDICTED: ATP-dependent RNA helicase DDX42-like isoform 5 [Macaca
           mulatta]
 gi|109116837|ref|XP_001116390.1| PREDICTED: ATP-dependent RNA helicase DDX42-like isoform 6 [Macaca
           mulatta]
          Length = 937

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 433 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 492

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 493 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 606

Query: 696 S 696
           S
Sbjct: 607 S 607


>gi|332243110|ref|XP_003270725.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Nomascus leucogenys]
          Length = 938

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 433 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 492

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 493 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 606

Query: 696 S 696
           S
Sbjct: 607 S 607


>gi|325295172|ref|YP_004281686.1| transcription-repair coupling factor [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065620|gb|ADY73627.1| transcription-repair coupling factor [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 1059

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 93/249 (37%), Gaps = 27/249 (10%)

Query: 159 QLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP 218
           +LLKG    +++    G+ G  K F + + I+ +    + + P++++A  +  + K F  
Sbjct: 7   KLLKGKVKNKELVKCYGLPGGSKGFILKE-IKELISSFLFLVPSEVVAESIIEDLKRFGL 65

Query: 219 HNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DCIVVSS 277
                             Y+P  D      SS        R  +   LL    + ++++ 
Sbjct: 66  R---------------VIYLPAWDVPPLDISSPLSLYQYRRLKSLYQLLSEPFNVLLLTP 110

Query: 278 VSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIE 337
            S    +   E+  + +++++ G  ++   +   L    YKR D     G F + GD++E
Sbjct: 111 HSLFQKVILPENLIEYVIEIEKGKEIDYSLIPKKLTTLGYKRVDSEPEEGEFSIKGDTLE 170

Query: 338 IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMK 397
           +     E        FG+ +EE+     L  + I       I      +  R  L   ++
Sbjct: 171 LVSPEGER--LVAEFFGDTVEELY----LNKEIIEKF---VIIPTLELLQDREKLKK-LE 220

Query: 398 YIKEELKMR 406
            I   +  R
Sbjct: 221 EIYPGVVER 229



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 65/169 (38%), Gaps = 11/169 (6%)

Query: 525 TIVVSATPGSWEL--EQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L         +  I   P G     V +     ++  +   +    ++
Sbjct: 686 VLYLSATPIPRTLYSALSGFRDISVIETPPVGRRGTKVVVSKYSDRI--LKTAVERELKR 743

Query: 582 GLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++ +        E L   + E   NI V  +H ++KT +  +++     G   +L+  
Sbjct: 744 NGQVFIVQNDIDELEPLKIKVEEMFPNIPVDIVHGQMKTEKIEKVMHKFFEGDIKILIAT 803

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +++  GLDIP    + ++ A++ G  +    L Q  GR  R +      
Sbjct: 804 SIIESGLDIPSANTLIVIGAERFGLSQ----LYQLRGRVGRGIEKGYCY 848



 Score = 44.3 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIH-SREKVQLLLGVTGSGKTFTMAKVIEAM---Q 193
           +  F+ +  Y P+ DQ  AI ++ K +   +   +L+ G  G GKT    +         
Sbjct: 525 LREFERRFPYKPTPDQLKAIREVYKDMESEKPMDRLICGDVGFGKTEVAMRAAMKAVTDG 584

Query: 194 RPAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           R   V+ P  ILA Q Y  FK  F    V
Sbjct: 585 RQVAVIVPTTILADQHYRTFKKRFKGFPV 613


>gi|321258735|ref|XP_003194088.1| ATP-dependent rRNA helicase RRP3 [Cryptococcus gattii WM276]
 gi|317460559|gb|ADV22301.1| ATP-dependent rRNA helicase RRP3 [Cryptococcus gattii WM276]
          Length = 586

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 32/227 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT     + +     +   +R T   D      SA  ++E V + ++    +  
Sbjct: 346 QTVMFSAT-WPESVRRLASTFLNDPLRITVGSDEL----SANKRIEQVVEVLDNPRDKDF 400

Query: 584 R---------------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           R                     IL+  L K+ A+ L   +      V  +H ++    R 
Sbjct: 401 RLTHHLRAHLKAHPNSKASPTRILVFALYKKEAQRLEYTIRRAGYAVGALHGDMTQEARF 460

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
           + +   + G+ +VLV  ++   GLDIP+ GLV  +      F  +    +   GR  R  
Sbjct: 461 KALEAFKTGQQNVLVATDVAARGLDIPDVGLVINV-----TFPLTTEDFVHRCGRTGRAG 515

Query: 683 NS-KVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK 728
            + K + +         LA +     R+   E  K+ +  P ++K+K
Sbjct: 516 KTGKAVTFFTGENHEKSLAGEFMRVLRDVGAEIPKEMDRFPTTIKKK 562


>gi|302205951|gb|ADL10293.1| DEAD-box helicase [Corynebacterium pseudotuberculosis C231]
          Length = 650

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++ V TK   E++ E L  R      ++ ++   +R   +  L+ G+ D+LV  ++ 
Sbjct: 306 EAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVA 365

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           S +  IGR  R   S   IL+     + +  +I
Sbjct: 366 ARGLDVERITHVFNYD-----IPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSI 420

Query: 702 DE 703
           + 
Sbjct: 421 ER 422


>gi|300858229|ref|YP_003783212.1| hypothetical protein cpfrc_00811 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685683|gb|ADK28605.1| hypothetical protein cpfrc_00811 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302330505|gb|ADL20699.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 1002]
 gi|308276186|gb|ADO26085.1| DEAD-box helicase [Corynebacterium pseudotuberculosis I19]
          Length = 660

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
             +++ V TK   E++ E L  R      ++ ++   +R   +  L+ G+ D+LV  ++ 
Sbjct: 306 EAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVA 365

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             GLD+     V   D           S +  IGR  R   S   IL+     + +  +I
Sbjct: 366 ARGLDVERITHVFNYD-----IPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSI 420

Query: 702 DE 703
           + 
Sbjct: 421 ER 422


>gi|237735417|ref|ZP_04565898.1| ATP-dependent RNA helicase RhlE [Mollicutes bacterium D7]
 gi|229381162|gb|EEO31253.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. D7]
          Length = 418

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 79/215 (36%), Gaps = 23/215 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            + + GF      D R  +   +   R  T++ SAT    E++     ++   ++   + 
Sbjct: 142 RMLDMGFI----KDIR--KILRFIPRRHQTMLFSAT-LPDEIKHLVSDLLNDPLKIM-IS 193

Query: 556 DPPVEIRSARTQVEDVYDEINLAA--------QQGLRILLTVLTKRMAEDLTEYLYERNI 607
              V +     Q     D++N A          Q    ++ V TKR  + L + L +  I
Sbjct: 194 SGNVTVEKI-NQSLYFVDKVNKAKLLIKLLENPQIYNAIVFVRTKRNVDTLCKKLIKAQI 252

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
               +H +     R+  + + +  K  VLV  ++   G+DI E   V   D         
Sbjct: 253 TCEGIHGDKSQNARVRALNNFKNDKVRVLVASDIAARGIDIDELTHVINFD-----LPDQ 307

Query: 668 KTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             + +  IGR AR   S   I +     K++   I
Sbjct: 308 AENYVHRIGRTARAGASGEAITFCSFQEKALLKDI 342


>gi|157737720|ref|YP_001490403.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
 gi|157699574|gb|ABV67734.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
          Length = 435

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 86/242 (35%), Gaps = 12/242 (4%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINL 577
            +   ++ SAT  +   +   G++   +   +         VE        +   + +  
Sbjct: 178 KQRQNLLFSATFSNEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHHVDKDRKKELLLH 237

Query: 578 AAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              +    ++L+   TK  A  L+E L +  I    +H       R + + D + GK  V
Sbjct: 238 LVNKNSWQQVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRV 297

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           LV  ++   G+DI +   V   +             +  IGR  R  N+ + I       
Sbjct: 298 LVATDIAARGIDIEQLPHVVNFE-----LPNVAEDYVHRIGRTGRAGNNGIAISLVCVDE 352

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
                 I++  +++ K++E N    +NP    E I    +     + +  N  +  +  +
Sbjct: 353 HEYLFGIEKLIKQKIKKVEINGFK-VNPNIKAEPIGNRSNRGNKANNSNQNRKVKPKDEN 411

Query: 755 LS 756
            S
Sbjct: 412 SS 413


>gi|254361250|ref|ZP_04977393.1| superfamily II helicase [Mannheimia haemolytica PHL213]
 gi|110735365|gb|ABG89253.1| ATP-dependent RNA helicase [Mannheimia haemolytica]
 gi|153092746|gb|EDN73789.1| superfamily II helicase [Mannheimia haemolytica PHL213]
          Length = 602

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 91/268 (33%), Gaps = 39/268 (14%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
             T + SAT   P      +      E  I+ T    P +E            D +    
Sbjct: 181 HQTALFSATMPEPIRRITRRFMKDPQEVKIKATERSAPDIEQSYWLVNGFRKNDALLRFL 240

Query: 580 QQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +       ++   TK    D+TE       R   ++ ++    R + +  LR G+ D+LV
Sbjct: 241 EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLRSGRLDILV 300

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   G+DI    LV   D   E     + S +  IGR  R   S   +L+ +   + 
Sbjct: 301 ATDVAARGIDIERISLVINYDIPLE-----EESYVHRIGRTGRAGRSGRALLFVEPRERR 355

Query: 697 IQLAIDE-----------------TTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPI 736
           +   I+                    +RREK         +H+       EK  E+++ +
Sbjct: 356 LLRNIENLIKKPINEVAIPNHEILMEKRREKFKARISKQLEHHD-----LEKYRELLEDL 410

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHL 764
              D     ++     + +  ++ +  +
Sbjct: 411 FTADQDHEELAA---AMMMLLQEKQKLI 435


>gi|114669826|ref|XP_001147663.1| PREDICTED: DEAD box polypeptide 42 protein isoform 5 [Pan
           troglodytes]
 gi|114669828|ref|XP_001147738.1| PREDICTED: DEAD box polypeptide 42 protein isoform 6 [Pan
           troglodytes]
 gi|114669830|ref|XP_001147818.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 7 [Pan
           troglodytes]
 gi|114669832|ref|XP_001147880.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 8 [Pan
           troglodytes]
          Length = 938

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 433 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 492

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 493 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 606

Query: 696 S 696
           S
Sbjct: 607 S 607


>gi|66826815|ref|XP_646762.1| hypothetical protein DDB_G0270396 [Dictyostelium discoideum AX4]
 gi|74897375|sp|Q55BR9|DDX49_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx49; AltName:
           Full=DEAD box protein 49
 gi|60474611|gb|EAL72548.1| hypothetical protein DDB_G0270396 [Dictyostelium discoideum AX4]
          Length = 508

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 78/206 (37%), Gaps = 17/206 (8%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +D Y    L   +G   ++ V      E +   L + +I    +HS +    R+  ++  
Sbjct: 232 KDCYLVYILKKHEGSSAIVFVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTF 291

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           + GK  VLV  ++   GLDIP+  +V            S    I  +GR AR   S   I
Sbjct: 292 KSGKVKVLVATDVASRGLDIPDVQIVINYK-----LSNSSKDYIHRVGRTARFGRSGRAI 346

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
            +      S+   I+E     +KQLE  K    +   V   + E              I 
Sbjct: 347 SFITPHDVSLIKGIEEII---KKQLELYKT---DDDEVFRHLKEA-----STARKIVEIH 395

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHL 773
           +D  +  + +K+ +     L+KQ+  
Sbjct: 396 LDEIEFGVKQKERRTERNELQKQLKE 421


>gi|315125230|ref|YP_004067233.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas sp. SM9913]
 gi|315013743|gb|ADT67081.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas sp. SM9913]
          Length = 420

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 479 TIPQISGMYRGDFHRKATL-----AEYGFR-LPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           T+ +I  +   +  R   L       Y FR +P   +   L F      R   +      
Sbjct: 147 TLNEIEVVVLDEADRMFDLGFIKDIRYMFRRMPDTSERLNLLFSATLSYRVQEL------ 200

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
               +   + + +E  ++    +   +   S   +++ +   I    +   + ++   TK
Sbjct: 201 AFEHMTNPEHVQIEPDVKTGKRIQEELFHPSQEDKIKLLLTLIEE--EWPEKAIVFANTK 258

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
              E +  +L     RV  +  +V   +R  I+     G+ D LV  ++   GL IPE  
Sbjct: 259 HSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAQFSKGELDFLVATDVAARGLHIPEVS 318

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAIDE 703
            V   D             +  IGR AR   +   I +A          I+E
Sbjct: 319 HVFNFD-----LPDDCEDYVHRIGRTARAGASGHAISFACEQYAYNLHEIEE 365


>gi|311744584|ref|ZP_07718384.1| ATP-dependent RNA helicase RhlE [Aeromicrobium marinum DSM 15272]
 gi|311312203|gb|EFQ82120.1| ATP-dependent RNA helicase RhlE [Aeromicrobium marinum DSM 15272]
          Length = 413

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 10/148 (6%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           ED             R ++   TK  A  L + L    +    +H ++   +R   +   
Sbjct: 237 EDRVRVARDLIAGEDRSIVFTRTKHGARRLAKQLSTAGLTAVDLHGDLNQNQRERNLARF 296

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G  DV+V  ++   G+ +   GLV   D   E       +     GR AR   S +++
Sbjct: 297 RNGTADVIVATDVAARGIHVDGIGLVVHYDPPAE-----HKAFTHRSGRTARAGESGIVV 351

Query: 689 YADTITK-----SIQLAIDETTRRREKQ 711
              T        ++Q     + RR E +
Sbjct: 352 TLATPEDLRDVVAMQNKAGVSARRHEVE 379


>gi|261492525|ref|ZP_05989078.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496800|ref|ZP_05993174.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307547|gb|EEY08876.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311684|gb|EEY12834.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 601

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 91/268 (33%), Gaps = 39/268 (14%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
             T + SAT   P      +      E  I+ T    P +E            D +    
Sbjct: 181 HQTALFSATMPEPIRRITRRFMKDPQEVKIKATERSAPDIEQSYWLVNGFRKNDALLRFL 240

Query: 580 QQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +       ++   TK    D+TE       R   ++ ++    R + +  LR G+ D+LV
Sbjct: 241 EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLRSGRLDILV 300

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   G+DI    LV   D   E     + S +  IGR  R   S   +L+ +   + 
Sbjct: 301 ATDVAARGIDIERISLVINYDIPLE-----EESYVHRIGRTGRAGRSGRALLFVEPRERR 355

Query: 697 IQLAIDE-----------------TTRRREKQLEH---NKKHNINPQSVKEKIMEVIDPI 736
           +   I+                    +RREK         +H+       EK  E+++ +
Sbjct: 356 LLRNIENLIKKPINEVAIPNHEILMEKRREKFKARISKQLEHHD-----LEKYRELLEDL 410

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHL 764
              D     ++     + +  ++ +  +
Sbjct: 411 FTADQDHEELAA---AMMMLLQEKQKLI 435


>gi|73952801|ref|XP_850174.1| PREDICTED: similar to nucleolar protein GU2 isoform 2 [Canis
           familiaris]
          Length = 738

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 87/257 (33%), Gaps = 34/257 (13%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 321 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 380

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 381 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 439

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 440 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 494

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                         R   QL +  +K  I  + V   +   +D +  +            
Sbjct: 495 P-------------RERGQLRYVEQKAGITFKRVG--VPSTMDLVKSKSMDAIRSLASVS 539

Query: 752 QLSLS--KKKGKAHLKS 766
             ++   +   +  ++ 
Sbjct: 540 YAAVDFFRPSAQRLIEE 556


>gi|50547049|ref|XP_500994.1| YALI0B16896p [Yarrowia lipolytica]
 gi|74660102|sp|Q6CEB8|DRS1_YARLI RecName: Full=ATP-dependent RNA helicase DRS1
 gi|49646860|emb|CAG83247.1| YALI0B16896p [Yarrowia lipolytica]
          Length = 753

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 94/260 (36%), Gaps = 26/260 (10%)

Query: 521 LRPTTIVVSAT---PGSWELEQCQGIIVEQIIRP-----TGLVDPPVEIRSARTQVEDVY 572
            +  T++ SAT     S  ++      V  +I P     +GLV   V IR        + 
Sbjct: 429 KKRQTLLFSATMNSSISSLIQLSLSRPVRVMINPPKQAASGLVQEFVRIRKRDHLKPALL 488

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I     +  R ++ V  K  A  L   L    +R+  +H  +   +R++ I   +  +
Sbjct: 489 ASILKKMDKEQRTIIFVARKETAHRLRIMLGLLGVRIGELHGALSQEQRLQSITAFKKLE 548

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             +LV  +L   GLDIP+   V   D       ++    +  +GR AR           +
Sbjct: 549 VPILVCTDLASRGLDIPKIECVVNYD-----MPQTHAVYLHRVGRTARAGREG-----RS 598

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
           IT   + A D    R   +     K     ++V   +     P + +  +      D   
Sbjct: 599 ITLVGEAAADRAIVREAIKSVSESKQG---KAVGRNVD---WPEVEKLYSKIEEKGDIVN 652

Query: 753 LSLSKKKGKAHLKSLRKQMH 772
             L+++K +     L+ +M 
Sbjct: 653 EILAEEKEEK--AMLQAEME 670


>gi|332969729|gb|EGK08743.1| ATP-dependent RNA helicase RhlE [Kingella kingae ATCC 23330]
          Length = 484

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 11/186 (5%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT  P   +L Q    + E I +      +  VE            + +     
Sbjct: 213 QTLLFSATFAPDIRKLAQDFMHLPETIEVAAQNTTNANVEQHVIAVDAHRKKELLERLIV 272

Query: 581 QGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                ++++   TK+ AE +   L  R +    +H +     R+E++   + G+  VLV 
Sbjct: 273 DLNMPQVIVFCKTKQSAEQVARDLLRRGLSANAIHGDKSQQTRLEVLSQFKSGELRVLVA 332

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   GLDI E   V   +             +  IGR  R     V I   D   + +
Sbjct: 333 TDVAARGLDIAELPFVINYE-----LPVQAEDYVHRIGRTGRAGAEGVAISMMDETEQKM 387

Query: 698 QLAIDE 703
             +I E
Sbjct: 388 YASIQE 393


>gi|330447422|ref|ZP_08311071.1| srmB, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491613|dbj|GAA05568.1| srmB, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 411

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 73/202 (36%), Gaps = 33/202 (16%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR------TQVEDVYDE 574
           R  +++ SAT  G    E  + I+ E +          VE   +R       Q+    D 
Sbjct: 179 RSQSLLFSATLEGKGVREFSEKILNEPV---------EVEAEPSRRERKKIHQLYHRCDN 229

Query: 575 INLA--------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +            +Q  R ++ V T+     L   L    I   ++  E+    R  +I 
Sbjct: 230 MEHKLALLENILKEQAERTIIFVKTRERLAVLRGQLETMGIPCNWIQGEMAQSARNNMIT 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK- 685
             R G  +VL+  ++   G+D+P+   V   D  +     +    +  IGR AR      
Sbjct: 290 RFRDGVINVLIATDVAARGIDLPDVSHVINFDMPR-----TADVYLHRIGRTARAGKKGT 344

Query: 686 VILYADTITKSIQLAIDETTRR 707
            I   +   +++   I+  +R 
Sbjct: 345 AISLIEAHDQAM---IERVSRY 363


>gi|237840157|ref|XP_002369376.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211967040|gb|EEB02236.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221483063|gb|EEE21387.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
 gi|221503995|gb|EEE29672.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 652

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 5/111 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A+ L   L    I V  +H++    +R + +   R G+  VL+  +++  
Sbjct: 464 VLIFVQSKERAKQLYCELVYDGIFVECIHADKTKKQRDDTVEAFRRGQIWVLICTDVMAR 523

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           G+D     LV   D     F +S    I  IGR  R       +   T   
Sbjct: 524 GVDFKNVELVINYD-----FPQSAAVYIHRIGRTGRAGRQGRAITFYTTAD 569


>gi|160944592|ref|ZP_02091819.1| hypothetical protein FAEPRAM212_02105 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443776|gb|EDP20780.1| hypothetical protein FAEPRAM212_02105 [Faecalibacterium prausnitzii
           M21/2]
          Length = 435

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 15/166 (9%)

Query: 546 EQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAAQQGL-RILLTVLTKRMAEDLTE 600
           E  ++P     P +       S R ++ D+   I     +G  R+++   TK     L  
Sbjct: 242 EITVQPREESQPKITQYMLETSGRNKLSDLAQII---IGEGYKRVMVFCDTKFNTATLAN 298

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
            L      V  +H ++   ER +I++  R GK  +LV  ++   G+D+ +   V   D  
Sbjct: 299 QLARLGFSVDCLHGDLSQKERNQIMQAFRDGKLAILVATDVAARGIDVSDVDAVINYDVP 358

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
            E            IGR  R     V        +  +  + E  R
Sbjct: 359 SEN-----EHYTHRIGRTGRAKKEGVSYLFYVPEE--KKRVQELLR 397


>gi|56412534|ref|YP_149609.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361469|ref|YP_002141105.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56126791|gb|AAV76297.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197092945|emb|CAR58375.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 444

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +VLV  ++  
Sbjct: 250 RSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ--LAI 701
            G+DIP+   V   D  + G   +    I   GRA R   +  ++ A      ++    I
Sbjct: 310 RGIDIPDVSHVINFDMPRSG--DTYLHRIGRTGRAGRKGTAISLVEAHDHLLLLKIGRYI 367

Query: 702 DETTRRREK 710
           +E  + R  
Sbjct: 368 EEPLKARVI 376


>gi|17987318|ref|NP_539952.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str.
           16M]
 gi|225852449|ref|YP_002732682.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis ATCC 23457]
 gi|254689182|ref|ZP_05152436.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 6 str. 870]
 gi|256044606|ref|ZP_05447510.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256113486|ref|ZP_05454320.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|256257432|ref|ZP_05462968.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 9 str. C68]
 gi|256264057|ref|ZP_05466589.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563958|ref|ZP_05834444.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260754681|ref|ZP_05867029.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260883707|ref|ZP_05895321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|265991030|ref|ZP_06103587.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265994867|ref|ZP_06107424.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|297248281|ref|ZP_06931999.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
 gi|17982999|gb|AAL52216.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str.
           16M]
 gi|225640814|gb|ACO00728.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis ATCC 23457]
 gi|260153974|gb|EEW89066.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260674789|gb|EEX61610.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260873235|gb|EEX80304.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|262765980|gb|EEZ11769.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|263001814|gb|EEZ14389.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094252|gb|EEZ18122.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|297175450|gb|EFH34797.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
 gi|326408963|gb|ADZ66028.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28]
 gi|326538677|gb|ADZ86892.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90]
          Length = 482

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 16/191 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVED------VYD 573
            T+  SAT    E+ +     +   +R            V  R  ++  +D      + D
Sbjct: 180 QTLFFSAT-MPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRD 238

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I          ++    K+   +L   L         +H ++    R+ ++   + GK 
Sbjct: 239 LIQSEGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKL 298

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIP+   V   D             +  IGR  R   S       T 
Sbjct: 299 RLLVASDVAARGLDIPDVSHVFNFDVPI-----HAEDYVHRIGRTGRAGRSGKAFTIVTS 353

Query: 694 TKSIQLAIDET 704
           + +  LA  E+
Sbjct: 354 SDTKYLAAIES 364


>gi|57239455|ref|YP_180591.1| transcription-repair coupling factor [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579431|ref|YP_197643.1| transcription-repair coupling factor [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161534|emb|CAH58461.1| transcription-repair coupling factor [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58418057|emb|CAI27261.1| Transcription-repair coupling factor [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 1122

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 68/439 (15%), Positives = 149/439 (33%), Gaps = 58/439 (13%)

Query: 182 TFTMAKVIEA-MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPR 240
            F +A++    +   AI +   +    QL S F+ + P+  V               VP 
Sbjct: 16  AFAIAEMYNKGLINSAIYITNQEDSLYQLSSIFQFYIPNLKVIV-------------VPA 62

Query: 241 TDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV------SCIYGIGSVESYSQMI 294
            +    K++S N  I   R  +  SL   ++      +      + I  +      SQ++
Sbjct: 63  WNLIPYKKNSPNNLIMAERIKSLYSLTHTHNNTTTPYIIITTTNAVIQKVLPRNIISQIV 122

Query: 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFG 354
            ++ + +++    + + L+   Y +       G F V   +I+IFP   ++   R+ +  
Sbjct: 123 FKITVQENLPIHYIKNYLITHGYTQYSTVQDIGEFCVNNTTIDIFPITYQN-PIRIYLNN 181

Query: 355 NDIEEISEFYPLTG--QKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEK 412
           + +E I  F   T       ++  I IY  S  +  +       + I++ LK+   +  +
Sbjct: 182 DHVESIKTFDCKTQLIHTDSSINEIFIYPTSEVIKQQ-------QNIEQFLKIYKTKANQ 234

Query: 413 EGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLF 472
           +  LL    +  +  Y  E           EN+          +    +F YI +   + 
Sbjct: 235 DKHLL--NTIVSKKKYIGE-----------ENFLPLFYEEELED----IFNYIQD---IQ 274

Query: 473 VDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT---TIVVS 529
           +  S+  I QIS               Y        D   +  E +  +       I ++
Sbjct: 275 LIFSNKIIDQISQYNNNLRSNYKNSLYYQI----APDQLYITLENFYSITKQLKKIIFLT 330

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
               ++     Q      + +   + +        +T V +++ +   +     ++L+  
Sbjct: 331 VDELNYVNIDIQNPQCN-VTKIKKIPNFKALAVQEQTDVFEIFAQYIKSQHHAYKLLIAC 389

Query: 590 LTKRMAEDLTEYLYERNIR 608
            +    E +   L    I+
Sbjct: 390 HSVETLEYIQSKLAICQIK 408



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 74/190 (38%), Gaps = 12/190 (6%)

Query: 524 TTIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             + +SATP    L     GI    +I+       PV   +       + + I    ++G
Sbjct: 737 HVLSLSATPIPRTLHMSLCGIKNFSLIKTPPKNRLPVITYTIHYTDNTIKNAIIHEYERG 796

Query: 583 LRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
            R           +++ + L     +I++   H ++ + E   ++ D   GKF VL+  +
Sbjct: 797 GRTFYVCPQINNIKNINDNLIRLLPDIKIGIAHGQLPSHELENVMNDFLDGKFTVLLTTS 856

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           ++  GLDIP    + I +AD  G  +    L Q  GR  R+       +  +   +    
Sbjct: 857 IIECGLDIPHANTIIIHNADMFGLAQ----LYQLKGRVGRSNIKGYAYFILSDNIN---- 908

Query: 701 IDETTRRREK 710
            + + RR E 
Sbjct: 909 -NISERRLEI 917


>gi|289450268|ref|YP_003474746.1| transcription-repair coupling factor [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184815|gb|ADC91240.1| transcription-repair coupling factor [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 1241

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 47/377 (12%), Positives = 122/377 (32%), Gaps = 62/377 (16%)

Query: 169 KVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNK---ILAAQ---LYSEFKNFFPHN-- 220
           +   + G++ + K++ +A + +           ++     A Q     +E       N  
Sbjct: 33  RHINVTGLSPTQKSYIVAALTDHFSNRQDAATNSQAVKQKAGQVRGWTAERGEETSRNLG 92

Query: 221 -----------AVEYFVSYYDYYQPEAYV--PRTDTYIEKESSINEQIDRMRHSATRSLL 267
                       +    +      P+  +  PR    I  ++    Q      +    L 
Sbjct: 93  AAMCLIEPDELQIRETQAALQPLLPDLQILRPREINLINADAGSRRQEQDRLLTLAGLLT 152

Query: 268 ERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRG 327
            R   +++S+ + +  +   +   + ++ L+  + ++ + L   L+   Y++       G
Sbjct: 153 GRVRHVLISATALLQRLPDPDFLRRHLLILQGTERIQPETLEHFLLAAGYEKVSQAEAFG 212

Query: 328 TFRVCGDSIEIFPSHLE----DVAWRVSMFGNDIEEISEFYPLTGQKIRN-VETIKIYAN 382
            F   GD +++ P  L     D   R+S F ++I+  + +  ++ + + N  +++ I   
Sbjct: 213 QFSRRGDIVDVVPPDLRQSKPDCGLRISFFDDEIDSFTYYSLISQRSVGNCRKSVLISPV 272

Query: 383 SHYVTPRPTLNTAMKY----------------IKEELKMRLIELEKEGRLLE-AQRLEQR 425
              +     L+                     I    K  ++ L++     +    L + 
Sbjct: 273 KEVLLDVDRLDAGSCADSLADSNINAENLAAKIDAAGKREILSLKENNASAKVTAELNKS 332

Query: 426 ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLF-EY--------IPEDSLLFVDES 476
           +  D+  L    +    + +   +       P  T+F +Y        +P    + +DE 
Sbjct: 333 LAADIAKLTEGLTTAPADKWLSLIY------PEDTMFWDYWQETPGPKLP----VVLDEP 382

Query: 477 HVTIPQISGMYRGDFHR 493
                 +         R
Sbjct: 383 LRLTKALDTAQAAWQER 399



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 69/185 (37%), Gaps = 18/185 (9%)

Query: 525  TIVVSATPGSWELEQCQG------IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
             + +SATP    L           +I E  +    ++   +E   A      V D IN  
Sbjct: 833  VLTLSATPIPRTLHMALSGIRDISVIEEAPLDRRSVLTYVMEYDPA-----IVIDAINRE 887

Query: 579  AQQGLRILLTVLTKRMAE----DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              +  ++          +    +L E L    I     H ++   +  ++I D   G+ D
Sbjct: 888  FSRHGQVFYLYNNTAGIDAKVNELQEALPGARIAAG--HGKMSEKQLEQVINDFYAGETD 945

Query: 635  VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
            +LV   ++  G+D+P    + + +AD+ G  +    L   +GR+ R   + +    D + 
Sbjct: 946  ILVCTTIIESGIDMPNVNTLIVENADRLGLAQ-LYQLRGRVGRSGRQAYAYITYRRDKVL 1004

Query: 695  KSIQL 699
              +  
Sbjct: 1005 TEVAE 1009


>gi|242014232|ref|XP_002427795.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212512264|gb|EEB15057.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 460

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 87/249 (34%), Gaps = 49/249 (19%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT                +E+   + + ++ + +    V    ++         
Sbjct: 246 QILLYSATFPVTVKNFMEKHLHEPYEVNLMEELTLKGVTQYYAFVQERQKVH-------- 297

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   + +  E L + + E      Y+H+++    R  +  D R 
Sbjct: 298 CLNTLFSKLQINQSI-IFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRN 356

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+D+    +V   D     F +   + +  IGR+ R  +  + +  
Sbjct: 357 GLCRNLVCSDLFTRGIDVQAVNVVINFD-----FPKMAETYLHRIGRSGRFGHLGIAINL 411

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ--SVKEKIMEVIDPILLEDAATTNISI 748
            T    + L                  H I  +  +  + I +VIDP L    A    + 
Sbjct: 412 ITYEDRLAL------------------HRIEQELGTEIKPIPKVIDPSLY--VAKLEDTQ 451

Query: 749 DAQQLSLSK 757
             +++++SK
Sbjct: 452 GIEEVNVSK 460


>gi|213405989|ref|XP_002173766.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001813|gb|EEB07473.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces japonicus
           yFS275]
          Length = 1056

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 7/144 (4%)

Query: 555 VDPPVEIRSARTQVEDVYDEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           V+  VE+RS  ++   + + +      Q  +R L+ V     A+ L   L +R      +
Sbjct: 680 VEQLVEVRSEESKFPRLLELLGELYNTQPDVRTLVFVDRHESADALLSQLMKRGYSCNSI 739

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H      +R   I D ++G FDVL+  ++   GLD+    LV   D             +
Sbjct: 740 HGGKDQHDRDSTISDYKMGIFDVLIATSVAARGLDVKSLQLVVNYDC-----PNHMEDYV 794

Query: 673 QTIGRAARNVNSKVILYADTITKS 696
             +GR  R  ++ V +   T  +S
Sbjct: 795 HRVGRTGRAGHTGVAVTFVTPDQS 818


>gi|115770281|ref|XP_783077.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
           [Strongylocentrotus purpuratus]
          Length = 660

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 92/255 (36%), Gaps = 27/255 (10%)

Query: 520 CLRPTTIVVSATPGSWELEQC--------QGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            +   T++ SAT      +          +  + E       L    + IR  R    + 
Sbjct: 254 SVARQTMLFSATMTDQVKDLALVSLKNPVRIFVNENTDVAYNLQQEFIRIRDNREGDREA 313

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                         ++ V TK+ A  L   L    I+V  +H ++   +R+E++R  +  
Sbjct: 314 IVSALCCRNFHDHCMVFVQTKKQAHRLHVILGLLGIKVGELHGDLSQTKRMEMLRMFKED 373

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
             D+LV  +L   GLDI     V            S+   +  +GR AR   S       
Sbjct: 374 LIDILVATDLAARGLDIEGVKTVINF-----TMPNSEKHYVHRVGRTARAGRSG------ 422

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKH----NINPQSVKEKIMEVIDPILLEDAATTNIS 747
              +S+ LA  E  RR  K+L    K+     I PQ V  K  + I  +  +      + 
Sbjct: 423 ---RSVSLA-GEKERRMLKELVKRAKNPVKSRIIPQGVVAKYRDKIASLEEDIEEVLRLE 478

Query: 748 IDAQQLSLSKKKGKA 762
            + +++  ++ + + 
Sbjct: 479 REEKEMRTTELQLQK 493


>gi|311257035|ref|XP_003126920.1| PREDICTED: ATP-dependent RNA helicase DDX19B-like isoform 1 [Sus
           scrofa]
          Length = 479

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 269 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNRDEKFQ 322

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 323 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREG 382

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 383 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 441

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 442 MVDSKHSMNIL----NR---IQEHFNKK 462


>gi|296201782|ref|XP_002748184.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Callithrix jacchus]
          Length = 934

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 433 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 492

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 493 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 606

Query: 696 S 696
           S
Sbjct: 607 S 607


>gi|255066127|ref|ZP_05317982.1| ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256]
 gi|255049672|gb|EET45136.1| ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256]
          Length = 468

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 71/191 (37%), Gaps = 21/191 (10%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSA-------RTQVEDVYD 573
            T++ SAT  P   +L +      E + +         VE           R  +E +  
Sbjct: 185 QTLLFSATFAPPIRKLAKDFMNAPEIVEVAAQNTTSANVEQHIIAVDALKKRNLLERLIV 244

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++ +      ++++   TK+  + +T  L  RN+  + +H +     R+E +   + G  
Sbjct: 245 DLQM-----NQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKEGSL 299

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
            VLV  ++   GLDI E   V   +             +  IGR  R     V I   D 
Sbjct: 300 RVLVATDVAARGLDIAELPFVINYE-----LPTQPEDYVHRIGRTGRAGADGVAISLMDK 354

Query: 693 ITKSIQLAIDE 703
             + +  AI E
Sbjct: 355 TEQKMFEAIKE 365


>gi|269119742|ref|YP_003307919.1| DEAD/DEAH box helicase [Sebaldella termitidis ATCC 33386]
 gi|268613620|gb|ACZ07988.1| DEAD/DEAH box helicase domain protein [Sebaldella termitidis ATCC
           33386]
          Length = 530

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 68/201 (33%), Gaps = 47/201 (23%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   TK   +D+ ++L  R      +H ++    R++ + D +  + ++LV  ++   G
Sbjct: 246 IVFCRTKSDVDDVAQHLKGRGYDAEAIHGDITQAMRMKTLEDFKKKRINILVATDVAARG 305

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +D+ +   V      +E       S +  IGR  R     + +                 
Sbjct: 306 IDVNDLTHVINYSIPQE-----PESYVHRIGRTGRAGKKGIAITF--------------- 345

Query: 706 RRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
                         + P+   +  +  I  +   D     I    + +S+ K+   A ++
Sbjct: 346 --------------VTPKEASK--ISKIQRLTKTDIKKEKIPKIEEVISVKKENLYACVE 389

Query: 766 SLRKQ--------MHLAADNL 778
            + K+        M   A  L
Sbjct: 390 EIEKEEDFGYYTGM---AKEL 407


>gi|206889345|ref|YP_002248930.1| transcription-repair coupling factor [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741283|gb|ACI20340.1| transcription-repair coupling factor [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 1042

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 29/188 (15%)

Query: 197 IVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQID 256
           IV   N+  AA+LY+ FK          F S+++      ++P   T             
Sbjct: 52  IVFEENEDQAAKLYAAFKT---------FSSFFNTTDEIVFLPSKGT------------- 89

Query: 257 RMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQ 316
             R  A   +L   +  ++++V     I          + +K G ++E++ L  +L+   
Sbjct: 90  -ERMIAIFKILNERNKKIITTVDS-AKIPPHIE----TINIKKGGTIEREFLAKNLINLG 143

Query: 317 YKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVET 376
           Y + ++    G F   G   +I+    E+   R+  FG++IEEI  FYP T +  ++   
Sbjct: 144 YSKVELVTQEGEFSEHGWVFDIW-GIGEEYPARIEFFGDEIEEIKLFYPDTQRSFKDKNE 202

Query: 377 IKIYANSH 384
           I I     
Sbjct: 203 IWIIQAEE 210



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 74/191 (38%), Gaps = 11/191 (5%)

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY--DEINLAAQQGL 583
           I ++ATP    L+     + +  +  T      + +++   Q  ++   + I    Q+G 
Sbjct: 651 ITITATPIPRTLQIGLSGLWDIFVIQT-PPKERLAVKTFVIQENELIIKEAIEKEIQRGG 709

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVR--YMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           +I          E +   + +     R    H  +K     +I+ D   GK D+L+  ++
Sbjct: 710 QIYFLHNRIHDIELVKSKIQKLVPMARIGVAHGRMKEKMLDKIMLDFIYGKIDILLCTSI 769

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
           +  GLDIP    + I  A   G L     +   +GR+ R  N+ +++  + I        
Sbjct: 770 IASGLDIPNVNTIIIDQAQTFG-LSDLYQIRGRVGRSYRQANAYLVIPPEEILSE----- 823

Query: 702 DETTRRREKQL 712
           D   R +  Q 
Sbjct: 824 DAKKRIKAIQE 834


>gi|119614684|gb|EAW94278.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_c [Homo
           sapiens]
          Length = 936

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 431 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 490

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 491 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 549

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 550 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 604

Query: 696 S 696
           S
Sbjct: 605 S 605


>gi|73978223|ref|XP_854851.1| PREDICTED: similar to eukaryotic translation initiation factor 4A,
           isoform 1 [Canis familiaris]
          Length = 258

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 79/191 (41%), Gaps = 17/191 (8%)

Query: 515 FEEWNCLR--PTTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSA 564
           ++ +  L      +++SAT  S  LE  +  + + I        +   G+    + +   
Sbjct: 71  YDTFQKLNSNTQVVLLSATMPSDVLEVTEKFMKDPIRILVKKEELTLEGIRQFYINVERE 130

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D          + ++ + T+R  + LTE ++ ++  V  +H ++   ER  I
Sbjct: 131 EWKLDTLCDLYETLTIT--QAVIFINTQRKVDWLTEKMHAQDFTVSVIHGDMDQKERDVI 188

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+   G    L+  +LL  G+++ +  LV   D        +K + I  IGR  R  + 
Sbjct: 189 MREFCSGSSRALITTDLLVRGIEVQQVSLVINYD-----LPTNKENYIHRIGRGGRFSSK 243

Query: 685 KVILYADTITK 695
            V +   T   
Sbjct: 244 GVAINTVTEED 254


>gi|331701930|ref|YP_004398889.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           buchneri NRRL B-30929]
 gi|329129273|gb|AEB73826.1| DEAD/DEAH box helicase domain protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 506

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 93/246 (37%), Gaps = 19/246 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQ--IIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT P   +    Q +       I+   L    ++    R +  + +D +     
Sbjct: 176 QTLLFSATMPAQIKRVGVQFMRDPHQVTIKAKELTTDLIDQYYVRVKEYEKFDTMTRFFD 235

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  +++++ L  R  +   +H ++    R +I+++ +  K D+LV 
Sbjct: 236 VQDPEVTIVFCRTKRRVDEVSKGLQARGYKAAGLHGDLTQARRTQIMQEFKAAKIDILVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   G+DI     V   D       +     +  +GR  R     V I +A       
Sbjct: 296 TDVAARGIDISGVTHVYNYD-----IPQDPDGYVHRVGRTGRAGKHGVSITFATPNEMDY 350

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
              I++ T+ R   L+        P +++E  +  ++    + A     +   +   ++ 
Sbjct: 351 LREIEKLTKVRMLPLK--------PPTIQEAFVGQLNSAESDIADLIKKTNTDKYEKMAD 402

Query: 758 KKGKAH 763
           K    +
Sbjct: 403 KLLDEY 408


>gi|291404258|ref|XP_002718495.1| PREDICTED: nucleolar protein GU2 [Oryctolagus cuniculus]
          Length = 735

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 87/257 (33%), Gaps = 34/257 (13%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 318 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 377

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 378 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 436

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 437 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 491

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                         R   QL +  +K  I  + V   +   +D +  +            
Sbjct: 492 P-------------RERGQLRYVEQKAGITFKRVG--VPSTMDLVKSKSMDAIRSLASVS 536

Query: 752 QLSLS--KKKGKAHLKS 766
             ++   +   +  ++ 
Sbjct: 537 YAAVDFFRPSAQRLIEE 553


>gi|238917309|ref|YP_002930826.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
 gi|238872669|gb|ACR72379.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
          Length = 571

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 22/222 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D       +   +          + + GFR     D   +  E        T++ SAT
Sbjct: 131 VMDHMRRKTVKFDSVSMVILDEADEMLDMGFR----EDMETILTETPEER--QTVLFSAT 184

Query: 532 ---PGSWELEQCQGI-----IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
              P      + Q       +V + +  + +     E+R  + + E +   I++   +  
Sbjct: 185 MPKPIMEIARKFQKDARIIKVVRKELTVSNIDQFYYEVRP-KNKTEILSRLIDIYNPK-- 241

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
             ++   TKR  ++L   L  R      +H ++K  +R  ++ D R GK ++L+  ++  
Sbjct: 242 LSVVFCNTKRQVDELISELKGRGYFADGIHGDMKQQQRDRVMDDFRSGKTEILIATDVAA 301

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            G+D+    +V   D       + +   +  IGR  R   S 
Sbjct: 302 RGIDVDGVDIVFNYD-----LPQDEEYYVHRIGRTGRAGKSG 338


>gi|226320379|ref|ZP_03795948.1| transcription-repair coupling factor [Borrelia burgdorferi 29805]
 gi|226234242|gb|EEH32954.1| transcription-repair coupling factor [Borrelia burgdorferi 29805]
          Length = 1125

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 96/253 (37%), Gaps = 22/253 (8%)

Query: 173 LLGVTGSGKTFTMAKV--IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L G  G  K F + K+       +  +++     L      + KN       + F   Y 
Sbjct: 32  LTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTL-----DKIKNDLQVITNQIFELNY- 85

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
            + P  Y         K +  NE+I  +         +     +    S +  I    + 
Sbjct: 86  -FSPLVYKG----IGSKSTIFNERIKFL----INFYKKNPGIYITVLKSLLSKIPDKNTL 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            + I +++   ++   ++  +L+   Y++     I G F V G+ I+I+P   E    R+
Sbjct: 137 LKNIYKIEKNTNINTADIEKTLITLGYEKTLRVTIPGEFTVKGEIIDIYP-FGEQNPIRI 195

Query: 351 SMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKE-ELKMRLI 408
           ++  + IEEI +F PLT  K    +   +I      +    T+NT    IK  E K  L 
Sbjct: 196 ALNFDKIEEIKKFNPLTQLKHDNEILEFQILPKKEIIWDDKTINTLKTKIKSVEYKKILE 255

Query: 409 E--LEKEGRLLEA 419
           E   +KE +  E 
Sbjct: 256 ELDFKKETKTEEM 268



 Score = 46.2 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 22/190 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +     I P   V     + S    +  +   I     +
Sbjct: 733 CLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESFSELL--IKHAIESELSR 790

Query: 582 GLRILL-------TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             ++ L           K + E LT Y      R+  +H ++   E   I+ +     + 
Sbjct: 791 DGQVFLVNHNIEELYYLKGLIEKLTPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQ 845

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  G+DIP    + I +A+K G  +    L Q  GR  R        +    +
Sbjct: 846 ILLATTIIENGIDIPNANTIIINNANKFGLAQ----LYQLKGRVGRGSQKAYAYFLYQDS 901

Query: 695 KSI-QLAIDE 703
           + + + +I+ 
Sbjct: 902 EKLNERSIER 911


>gi|224532959|ref|ZP_03673567.1| transcription-repair coupling factor [Borrelia burgdorferi WI91-23]
 gi|224512076|gb|EEF82469.1| transcription-repair coupling factor [Borrelia burgdorferi WI91-23]
          Length = 1125

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 96/253 (37%), Gaps = 22/253 (8%)

Query: 173 LLGVTGSGKTFTMAKV--IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L G  G  K F + K+       +  +++     L      + KN       + F   Y 
Sbjct: 32  LTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTL-----DKIKNDLQVITNQIFELNY- 85

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
            + P  Y         K +  NE+I  +         +     +    S +  I    + 
Sbjct: 86  -FSPLVYKG----IGSKSTIFNERIKFL----INFYKKNPGIYITVLKSLLSKIPDKNTL 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            + I +++   ++   ++  +L+   Y++     I G F V G+ I+I+P   E    R+
Sbjct: 137 LKNIYKIEKNTNINTADIEKTLITLGYEKTLRVTIPGEFTVKGEIIDIYP-FGEQNPIRI 195

Query: 351 SMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKE-ELKMRLI 408
           ++  + IEEI +F PLT  K    +   +I      +    T+NT    IK  E K  L 
Sbjct: 196 ALNFDKIEEIKKFNPLTQLKHDNEILEFQILPKKEIIWDDKTINTLKTKIKSVEYKKILE 255

Query: 409 E--LEKEGRLLEA 419
           E   +KE +  E 
Sbjct: 256 ELDFKKETKTEEM 268



 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 22/190 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +     I P   V     + S    +  +   I     +
Sbjct: 733 CLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESFSELL--IKHAIESELSR 790

Query: 582 GLRILL-------TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             ++ L           K + E LT Y      R+  +H ++   E   I+ +     + 
Sbjct: 791 DGQVFLVNHNIEELYYLKTLIERLTPY-----ARIAIIHGKLTGEEIENIMHNFIEKAYQ 845

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  G+DIP    + I +A+K G  +    L Q  GR  R        +    +
Sbjct: 846 ILLATTIIENGIDIPNANTIIINNANKFGLAQ----LYQLKGRVGRGSQKAYAYFLYQDS 901

Query: 695 KSI-QLAIDE 703
           + + + +I+ 
Sbjct: 902 EKLNERSIER 911


>gi|126659493|ref|ZP_01730626.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
 gi|126619227|gb|EAZ89963.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
          Length = 478

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 8/133 (6%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +     ++ V TK+ A DLT  L E    V   H  +   +R  ++   R GK  ++V 
Sbjct: 239 IEDPESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVVA 298

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLD+     V   D        +  + I  IGR  R   +   I   + I + +
Sbjct: 299 TDIAARGLDVENLSHVINYD-----LPDNSETYIHRIGRTGRAGKTGTAISLIEPIDRRM 353

Query: 698 QLAIDETTRRREK 710
              I+   R R+K
Sbjct: 354 VRQIE--KRLRQK 364


>gi|332703129|ref|ZP_08423217.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553278|gb|EGJ50322.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 532

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 524 TTIVVSATPGSWELEQCQ--------GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            TI  SAT     +   +          +  +++    +     E+     ++E +   I
Sbjct: 180 QTIFFSATMRPEIMRLAEKYLDKPEFVKVSHKVLTVPNVEQIYYEV-PRFGRLEAMCRII 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +    +    ++   TK+  ++L E+L  R      +H ++   +R  ++   R G  ++
Sbjct: 239 DFYNPK--LTVVFANTKKGVDELVEHLQARGYMADGLHGDMNQAQRDRVMAKFRAGSIEI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           L+  ++   G+D+ +   V   D             +  IGR  R   S 
Sbjct: 297 LIATDVAARGIDVEDIEAVFNYD-----IPSDVEYYVHRIGRTGRAGRSG 341


>gi|321479275|gb|EFX90231.1| hypothetical protein DAPPUDRAFT_190268 [Daphnia pulex]
          Length = 623

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 68/200 (34%), Gaps = 17/200 (8%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
                 + + GF      ++    F  +   R  T++ SAT         +  +V+ I  
Sbjct: 344 MDEADRMIDMGFE-----EDIRTIFSYFKGQR-QTLLFSATMPKKIQNFARSALVKPITI 397

Query: 551 PTG-----LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
             G      ++   E+     Q   +   +    +    +L+    K+  + + EYL  +
Sbjct: 398 NVGRAGAASMNVVQEV-EYVNQEAKIVHLLECIQKTQPPVLIFAEKKQDVDAIHEYLLLK 456

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            I    +H      ER   +   R G  DVLV  ++  +GLD      V   D       
Sbjct: 457 GIEAVAIHGSKDQEERSRAVDAFRQGIKDVLVATDVASKGLDFVNIQHVINYD-----MP 511

Query: 666 RSKTSLIQTIGRAARNVNSK 685
               + +  IGR  R+ N  
Sbjct: 512 DDIENYVHRIGRTGRSGNKG 531


>gi|257054731|ref|YP_003132563.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
 gi|256584603|gb|ACU95736.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
          Length = 559

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 66/186 (35%), Gaps = 13/186 (6%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQIIRP---TGLVDPPVEIRSARTQVEDVYDEINLA 578
            T++ SAT PG    L +        I      TG +         R    D  + I   
Sbjct: 199 QTMLFSATMPGPILTLARTFLRQPTHIRAEAGETGAIHERTTQFVYRAHSLDKPELIAKV 258

Query: 579 AQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            Q   R   ++   TKR A+ + + L ER      +H ++    R + +R  R GK D+L
Sbjct: 259 LQAEGRGLTMIFTRTKRTAQKVADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDIL 318

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   G+D+     V             + + +  IGR  R   + V I   D    
Sbjct: 319 VATDVAARGIDVEGVTHVINY-----QMPEDEKTYVHRIGRTGRAGRTGVAITLVDWDEV 373

Query: 696 SIQLAI 701
                I
Sbjct: 374 PRWKLI 379


>gi|160380616|sp|A6ZUA1|DBP3_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP3; AltName: Full=DEAD
           box protein 3; AltName: Full=Helicase CA3
 gi|151943729|gb|EDN62039.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
          Length = 523

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 66/179 (36%), Gaps = 17/179 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI---------IRPTGLVDPPVEIRSARTQVEDVY 572
           +  T++ +AT      E     +   I         +     +   VE+   R +   + 
Sbjct: 287 KRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLL 346

Query: 573 DEINLA---AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           + +       ++  ++L+  L K+ A  +   L      +  +H ++   +R + + + +
Sbjct: 347 ELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNIAAIHGDLSQQQRTQALNEFK 406

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            GK ++L+  ++   GLDIP    V  L      F  +    +  IGR  R   +    
Sbjct: 407 SGKSNLLLATDVAARGLDIPNVKTVINL-----TFPLTVEDYVHRIGRTGRAGQTGTAH 460


>gi|119482938|ref|XP_001261497.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
 gi|119409652|gb|EAW19600.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
          Length = 691

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 6/138 (4%)

Query: 568 VEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           V ++     LA  Q  +  L+  +     + LTE      I  RY+ ++     R+E +R
Sbjct: 289 VNNITVRAWLANAQDRKSTLVFCVDVAHTKALTETFRNYGIDARYITAKTPKDVRMEQLR 348

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R G++ VL+   L  EG DIP    V +    +     S+  LIQ IGR  R    K 
Sbjct: 349 AFRNGEYPVLLNCGLFTEGTDIPNIDCVLLARPTR-----SRNLLIQMIGRGLRLYPGKE 403

Query: 687 ILYADTITKSIQLAIDET 704
             +   +  ++   +  T
Sbjct: 404 DCHIIDMVATLNTGVLST 421



 Score = 39.3 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR------PAIVMAPNKILA 206
           Q   I  +LK +    K   +   TG+GKT    ++I  +         ++++   K L 
Sbjct: 66  QEECIQSVLKYLDDGHKRLGISLATGAGKTVIFTELIGRIPSRNEIGDKSLIIVHRKELV 125

Query: 207 AQLYSEFKNFFPHNAVE 223
            Q     +  +P   VE
Sbjct: 126 EQAAQHCRRAYPDRTVE 142


>gi|27379459|ref|NP_770988.1| ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110]
 gi|27352611|dbj|BAC49613.1| ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110]
          Length = 500

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
             ++    KR    + + L +    V  +H ++    R+  +   R G+  +LV  ++  
Sbjct: 247 NAIIFCNRKREVAIVHKSLQKHGFSVGALHGDMDQPARMAALEQFRKGELPLLVASDVAA 306

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAID 702
            GLDIPE   V   D             +  +GR  R   S   I     + +   +AI+
Sbjct: 307 RGLDIPEVSHVFNFDV-----PHHPDDYVHRVGRTGRAGRSGTAISIVTPLDQKSMVAIE 361


>gi|85711917|ref|ZP_01042972.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
 gi|85694314|gb|EAQ32257.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
          Length = 421

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 10/179 (5%)

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           P   E  N L   T+       ++E       +  +  + TG+         ++    D 
Sbjct: 184 PDPSERLNLLFSATLSYRVQELAYEHMNAPTKVEVEPQQKTGVRISEELFYPSK---YDK 240

Query: 572 YDEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
              +    ++    R ++   TK   + + ++L     RV  +  +V   +R++I+ D  
Sbjct: 241 MPLLLTLIEEDWPDRAIVFANTKHGCDKVHQWLEINGHRVGLLTGDVPQKKRLKILDDFA 300

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G  D+LV  ++   GL IPE   V   D             +  IGR  R   S   +
Sbjct: 301 EGHLDILVATDVAARGLHIPEVTHVYNFD-----LPDDCEDYVHRIGRTGRAGASGAAV 354


>gi|257466621|ref|ZP_05630932.1| transcription-repair coupling factor [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917776|ref|ZP_07914016.1| transcription-repair coupling factor [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313691651|gb|EFS28486.1| transcription-repair coupling factor [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 983

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 14/150 (9%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
             +G      +L+  L +Q+Y R  +   +G + + GD ++I+P + +    R+  FG +
Sbjct: 98  FTVGKEYSITKLVEHLEQQEYTRNYLLEKKGEYSIRGDILDIYP-YTDSSPIRIEFFGEE 156

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANS---------HYVTPRPTLNTAMKYIKEELKMRL 407
           IE IS F     +    ++  K+Y ++              +   +   + I  EL    
Sbjct: 157 IERISYFDIENQKSFHLLKEYKMYTDNNKIEKSLIPFLNLEKKNYSLFFENI--ELLSY- 213

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +LE+   L E +R +Q+   + E L   G
Sbjct: 214 -KLEEMILLEENEREKQKYRKEFENLYENG 242



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 61/157 (38%), Gaps = 6/157 (3%)

Query: 516 EEWNCLRPT--TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E++  +R     + ++ATP    L     GI    I+         ++      + E++ 
Sbjct: 598 EKFKKIRGNLNILAMTATPIPRTLNLSLLGIRDLSIVDTPPDGRKTIKTFFIEKKEENIV 657

Query: 573 DEINLAAQQGLRIL-LTVLTKRMAEDLTEY--LYERNIRVRYMHSEVKTLERIEIIRDLR 629
             I     +  ++  +    KR+ E + E   +    +++ Y+H ++   E    I    
Sbjct: 658 KAILKELAREGQVFYVFNSVKRIEEKVKELEKILPSYVKIDYIHGKMSGKELKYKIEQFE 717

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
             + DVLV   ++  G+DI     + I   +K G  +
Sbjct: 718 NMQIDVLVSTTIIENGIDIENANTMIIEGMEKLGLSQ 754


>gi|240282249|gb|EER45752.1| DEAD/DEAH box RNA helicase [Ajellomyces capsulatus H143]
          Length = 579

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TK  A+ + +YLY   +    +HS+    ER + +R  +  K  ++V   +  
Sbjct: 385 RTLVFVNTKAQADLIDDYLYNMGLPSTSIHSDRTQREREDALRAFKTAKSPIMVATGVSA 444

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            GLDI     V   D             I  IGR AR  N  +        ++  +A D
Sbjct: 445 RGLDIKNVMHVINFDMPSAAHG-GIEEYIHRIGRTARIGNEGLATSFYNHDRNSDIAAD 502


>gi|255078748|ref|XP_002502954.1| predicted protein [Micromonas sp. RCC299]
 gi|226518220|gb|ACO64212.1| predicted protein [Micromonas sp. RCC299]
          Length = 435

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 11/167 (6%)

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL---- 583
           V+A  G +  +     I  + +R +  V   VE+     +   +   +  A  +      
Sbjct: 240 VAAAAGDFTNDVVTVRIGGEALRASDNVSQIVEVVDEDDKHAKLVGWLERALGEADAGGW 299

Query: 584 --RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R+++ + +K   +  T  L         +H +    ER  ++ + R GK  V++  ++
Sbjct: 300 TPRVIVFLSSKARVDSATRRLRHEGFPALSIHGDKTQEEREWVLGEFRAGKSPVMLATDV 359

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              GLD+ +  LV   D     F       +  IGR  R        
Sbjct: 360 AARGLDVKDVSLVINYD-----FPAKMEDYVHRIGRTGRAGAKGAAR 401


>gi|225548852|ref|ZP_03769829.1| transcription-repair coupling factor [Borrelia burgdorferi 94a]
 gi|225370455|gb|EEG99891.1| transcription-repair coupling factor [Borrelia burgdorferi 94a]
          Length = 1125

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 96/253 (37%), Gaps = 22/253 (8%)

Query: 173 LLGVTGSGKTFTMAKV--IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L G  G  K F + K+       +  +++     L      + KN       + F   Y 
Sbjct: 32  LTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTL-----DKIKNDLQVITNQIFELNY- 85

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
            + P  Y         K +  NE+I  +         +     +    S +  I    + 
Sbjct: 86  -FSPLVYKG----IGSKSTIFNERIKFL----INFYKKNPGIYITVLKSLLSKIPDKNTL 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            + I +++   ++   ++  +L+   Y++     I G F V G+ I+I+P   E    R+
Sbjct: 137 LKNIYKIEKNTNINTADIEKTLITLGYEKTLRVTIPGEFTVKGEIIDIYP-FGEQNPIRI 195

Query: 351 SMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKE-ELKMRLI 408
           ++  + IEEI +F PLT  K    +   +I      +    T+NT    IK  E K  L 
Sbjct: 196 ALNFDKIEEIKKFNPLTQLKHDNEILEFQILPKKEIIWDDKTINTLKTKIKSVEYKKILE 255

Query: 409 E--LEKEGRLLEA 419
           E   +KE +  E 
Sbjct: 256 ELDFKKETKTEEM 268



 Score = 47.0 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 22/190 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +     I P   V     + S    +  +   I     +
Sbjct: 733 CLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESFSELL--IKHAIESELSR 790

Query: 582 GLRILL-------TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             ++ L           K + E LT Y      R+  +H ++   E   I+ +     + 
Sbjct: 791 DGQVFLVNHNIEELYYLKTLIERLTPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQ 845

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  G+DIP    + I +A+K G  +    L Q  GR  R        +    +
Sbjct: 846 ILLATTIIENGIDIPNANTIIINNANKFGLAQ----LYQLKGRVGRGSQKAYAYFLYQDS 901

Query: 695 KSI-QLAIDE 703
           + + + +I+ 
Sbjct: 902 EKLNERSIER 911


>gi|45446743|ref|NP_031398.2| ATP-dependent RNA helicase DDX42 [Homo sapiens]
 gi|45446747|ref|NP_987095.1| ATP-dependent RNA helicase DDX42 [Homo sapiens]
 gi|74750541|sp|Q86XP3|DDX42_HUMAN RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42; AltName: Full=RNA helicase-like protein;
           Short=RHELP; AltName: Full=RNA helicase-related protein;
           Short=RNAHP; AltName: Full=SF3b DEAD box protein;
           AltName: Full=Splicing factor 3B-associated 125 kDa
           protein; Short=SF3b125
 gi|29420431|dbj|BAC66466.1| RNA helicase-related protein [Homo sapiens]
 gi|62205357|gb|AAH93081.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Homo sapiens]
 gi|119614683|gb|EAW94277.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_b [Homo
           sapiens]
 gi|168277556|dbj|BAG10756.1| ATP-dependent RNA helicase DDX42 [synthetic construct]
          Length = 938

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 433 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 492

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 493 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 606

Query: 696 S 696
           S
Sbjct: 607 S 607


>gi|71027723|ref|XP_763505.1| RNA helicase [Theileria parva strain Muguga]
 gi|68350458|gb|EAN31222.1| RNA helicase, putative [Theileria parva]
          Length = 741

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 12/172 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLV---DPPVEIR----SARTQVEDVYDEIN 576
            T++ SAT      +  +  + + I    G V   +  ++ R        +++ +   + 
Sbjct: 476 QTVMFSATFPKEIQQLAREFLSDYIYLAVGRVGSTNEFIKQRLLYADQDQKIKYLIKLLR 535

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G  +L+ V TK+ A+ +  YL   N +   +H +    +R + +   + G   ++
Sbjct: 536 DNTNLGGLVLIFVETKKRADLIEGYLLSENFKAVNIHGDRSQEDREKALSLFKAGVRPIM 595

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           V  ++   GLDI     V   D        +    +  IGR  R  N  +  
Sbjct: 596 VATDVAARGLDISNITHVINCD-----LPTNIDDYVHRIGRTGRAGNIGIAT 642


>gi|70986940|ref|XP_748956.1| DEAD/DEAH box helicase [Aspergillus fumigatus Af293]
 gi|66846586|gb|EAL86918.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus Af293]
 gi|159123274|gb|EDP48394.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus A1163]
          Length = 690

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 6/138 (4%)

Query: 568 VEDVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           V ++     LA  Q  +  L+  +     + LTE      I  RY+ ++     R+E +R
Sbjct: 288 VNNITVRAWLANAQDRKSTLVFCVDVAHTKALTETFRNYGIDARYITAKTPKDVRMEQLR 347

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R G++ VL+   L  EG DIP    V +    +     S+  LIQ IGR  R    K 
Sbjct: 348 AFRNGEYPVLLNCGLFTEGTDIPNIDCVLLARPTR-----SRNLLIQMIGRGLRLYPGKE 402

Query: 687 ILYADTITKSIQLAIDET 704
             +   +  ++   +  T
Sbjct: 403 DCHIIDMVATLNTGVLST 420



 Score = 39.3 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR------PAIVMAPNKILA 206
           Q   I  +LK +    K   +   TG+GKT    ++I  +         ++++   K L 
Sbjct: 65  QEECIQSVLKYLDEGHKRLGISLATGAGKTVIFTELIGRIPSRNEIGDKSLIIVHRKELV 124

Query: 207 AQLYSEFKNFFPHNAVE 223
            Q     +  +P   VE
Sbjct: 125 EQAAQHCRRAYPDRTVE 141


>gi|311278491|ref|YP_003940722.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308747686|gb|ADO47438.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 444

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 20/197 (10%)

Query: 516 EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
           +    L    + VSATP + E ++          R          ++    Q +DV    
Sbjct: 198 DFAERLLEDPVEVSATPSTRERKKIHQW----YYRADNFEHKLELLKHLLKQ-DDVT--- 249

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   R ++ V  +    ++ E L    I   Y+  E+   +R+E I+ L  G+ +V
Sbjct: 250 --------RSIVFVRKRERVHEMAELLRAAGINNCYLEGEMAQAKRVEGIKRLTDGRVNV 301

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  ++   G+DIP+   V   D  + G   +    I   GRA R   +  ++ A     
Sbjct: 302 LIATDVAARGIDIPDVSHVFNFDMPRSG--DTYLHRIGRTGRAGRKGTAISLVEAHDHLL 359

Query: 696 SIQ--LAIDETTRRREK 710
            ++    I+E  + R  
Sbjct: 360 LMKIGRYIEEPLKPRVI 376


>gi|307636940|gb|ADN79390.1| cold-shock DEAD-box protein A [Helicobacter pylori 908]
          Length = 491

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 34/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++        +  H  +P++  +   D      + + GF     +D+    F+
Sbjct: 144 TPGRLLDHLKN------ERIHKFVPKVVVLDESD-----EMLDMGF-----LDDIEEIFD 187

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVY 572
                    ++ SAT     +++    I+E  I+    P+ + +  +  R       +  
Sbjct: 188 YLPSEA-QILLFSAT-MPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINKHERA 245

Query: 573 DEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + I      Q   + ++   TK+ A++L ++L  +N +   +H ++   +R   I   + 
Sbjct: 246 EAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              DVLV  ++   GLDI     V            +  S I  IGR  R     + +  
Sbjct: 306 NDADVLVATDVASRGLDISGVSHVFNYH-----LPLNTESYIHRIGRTGRAGKKGMAITL 360

Query: 691 DTITK-----SIQLAID 702
            T  +      +Q  ID
Sbjct: 361 VTPLEYKELLRMQKEID 377


>gi|307245436|ref|ZP_07527524.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307247549|ref|ZP_07529593.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307254390|ref|ZP_07536228.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256597|ref|ZP_07538378.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258849|ref|ZP_07540581.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307261031|ref|ZP_07542713.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307263212|ref|ZP_07544832.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|306853777|gb|EFM85994.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306855914|gb|EFM88073.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306862689|gb|EFM94645.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865007|gb|EFM96909.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867200|gb|EFM99056.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869333|gb|EFN01128.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306871429|gb|EFN03153.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 593

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 72/198 (36%), Gaps = 28/198 (14%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TK    D+TE       R   ++ ++    R + +  L+ G+ D+LV  ++   
Sbjct: 222 AIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAAR 281

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR------NVNSKVILYADTITKSIQ 698
           G+DI    LV   D   +    S    I   GRA R       V  +       I   ++
Sbjct: 282 GIDIERISLVVNFDIPLD--AESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 339

Query: 699 LAIDET---------TRRREKQLEH---NKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
             IDE           +RREK         +H+       EK  E+++ +   D     +
Sbjct: 340 KPIDEVAIPNHEILMAKRREKFKARVSKQLEHHD-----LEKYRELLEDLFTADQDHEEL 394

Query: 747 SIDAQQLSLSKKKGKAHL 764
           +     + +  ++ +  +
Sbjct: 395 AA---AMMMMLQEKQKLI 409


>gi|223997264|ref|XP_002288305.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220975413|gb|EED93741.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 378

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 3/115 (2%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TKR A+ +   L +       +HS V   ER   +   R  + +VL+  N+L  G
Sbjct: 232 IIFVGTKRDADSVHRTLTDSGYTCSLLHSSVDNDERDRTMEAFRKNESNVLITTNVLARG 291

Query: 646 LDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
           +D+    LV   D   DK+G      + +  IGR  R       +      +SI+
Sbjct: 292 VDVDNVCLVVNYDVPVDKDGQPD-FETYLHRIGRTGRFGRKGTAINLIGDQRSIE 345


>gi|307153172|ref|YP_003888556.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 7822]
 gi|306983400|gb|ADN15281.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7822]
          Length = 482

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +     ++ V TK+ A +LT  L E    V   H  +   +R  +++  R GK  ++V 
Sbjct: 239 IEDPESAIIFVRTKQTATELTGKLQESGHHVDEYHGNLSQAQRERLVQRFREGKIKLVVA 298

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLD+ +   V   D        +  + I  IGR  R   +   I   + I + +
Sbjct: 299 TDIAARGLDVEDLSHVINFD-----LPDNTETYIHRIGRTGRAGKTGTAISLIEPIDRRM 353

Query: 698 QLAIDE 703
              I+ 
Sbjct: 354 LRQIEH 359


>gi|254428186|ref|ZP_05041893.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
 gi|196194355|gb|EDX89314.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
          Length = 457

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 66/207 (31%), Gaps = 23/207 (11%)

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEI--RSARTQVEDVYDEINLAAQQG------- 582
           P    L        E      GLV+ PVE+      T  E V   I    ++        
Sbjct: 177 PKRQNLMFSATFSPEIRALAKGLVNDPVEVDISPRNTTTELVTQWIAPVDKKRKPALLTH 236

Query: 583 -------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   ++L+   TK  A  L + L    I    +H       R   + D + GK   
Sbjct: 237 LIQEHGWFQVLVFSRTKHGANKLAKQLEANGIEAAAIHGNKSQNARTRALADFKNGKVRA 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI +   V  +D             I   GRA     +  ++ AD    
Sbjct: 297 LVATDIAARGLDIEQLPQVVNVDLP--NVPEDYVHRIGRTGRAGATGQAISLVSADEF-- 352

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINP 722
                + +  R  ++QLE        P
Sbjct: 353 ---QQLKDIERLTQQQLERKIVAGFEP 376


>gi|189485761|ref|YP_001956702.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287720|dbj|BAG14241.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 543

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T+  SAT    E         +       +V   + + S      D+ +      +   
Sbjct: 180 QTVFFSAT-MPKEF-LSLTKKYQHSPETIKVVSEKLTVPSIEQYYFDIKEH--QKLEALT 235

Query: 584 RIL---------LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           R L         +   TK+  +++T  L  R      +H ++   +R  ++   R G  +
Sbjct: 236 RCLDMYDPKLSLVFCNTKKRVDEVTSSLQARGYYADAIHGDMNQSQRNRVMSKFRNGSIE 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+  ++   G+D+    +V   D  K+         +  IGR  R   +    Y+    
Sbjct: 296 LLIATDVAARGIDVDGIDMVFNFDVPKD-----DEDYVHRIGRTGRAGKAG-KAYSFVSG 349

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKE--KIMEVIDPILLEDAATTNISIDAQQ 752
           K I          R+ Q     K NI    V     +    + I+L+         D ++
Sbjct: 350 KDIYKL-------RDIQ--RYTKANIKRMQVPSLADVENTKETIMLDKVKEVLKEKDLEK 400

Query: 753 LS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDE 789
            + +++      + SL      AA  L    A+  R++
Sbjct: 401 YAGMAESLISDEITSLDV----AAALLKIMLASEKREQ 434


>gi|218249390|ref|YP_002375126.1| transcription-repair coupling factor [Borrelia burgdorferi ZS7]
 gi|218164578|gb|ACK74639.1| transcription-repair coupling factor [Borrelia burgdorferi ZS7]
          Length = 1125

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 96/253 (37%), Gaps = 22/253 (8%)

Query: 173 LLGVTGSGKTFTMAKV--IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L G  G  K F + K+       +  +++     L      + KN       + F   Y 
Sbjct: 32  LTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTL-----DKIKNDLQVITNQIFELNY- 85

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
            + P  Y         K +  NE+I  +         +     +    S +  I    + 
Sbjct: 86  -FSPLVYKG----IGSKSTIFNERIKFL----INFYKKNPGIYITVLKSLLSKIPDKNTL 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            + I +++   ++   ++  +L+   Y++     I G F V G+ I+I+P   E    R+
Sbjct: 137 LKNIYKIEKNTNINTADIEKTLITLGYEKTLRVTIPGEFTVKGEIIDIYP-FGEQNPIRI 195

Query: 351 SMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKE-ELKMRLI 408
           ++  + IEEI +F PLT  K    +   +I      +    T+NT    IK  E K  L 
Sbjct: 196 ALNFDKIEEIKKFNPLTQLKHDNEILEFQILPKKEIIWDDKTINTLKTKIKSVEYKKILE 255

Query: 409 E--LEKEGRLLEA 419
           E   +KE +  E 
Sbjct: 256 ELDFKKETKTEEM 268



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 22/190 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +     I P   V     + S    +  +   I     +
Sbjct: 733 CLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESFSELL--IKHAIESELSR 790

Query: 582 GLRILL-------TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             ++ L           K + E LT Y      R+  +H ++   E   I+ +     + 
Sbjct: 791 DGQVFLVNHNIEELYYLKTLIERLTPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQ 845

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  G+DIP    + I +A+K G  +    L Q  GR  R        +    +
Sbjct: 846 ILLATTIIENGIDIPNVNTIIINNANKFGLAQ----LYQLKGRVGRGSQKAYAYFLYQDS 901

Query: 695 KSI-QLAIDE 703
           + + + +I+ 
Sbjct: 902 EKLNERSIER 911


>gi|94969920|ref|YP_591968.1| DEAD/DEAH box helicase-like [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551970|gb|ABF41894.1| DEAD/DEAH box helicase-like protein [Candidatus Koribacter
           versatilis Ellin345]
          Length = 423

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 15/170 (8%)

Query: 523 PTTIVVSATPGS-------WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             T+  SAT G          L     + +  I++P   V+          + + +   +
Sbjct: 202 KQTLCFSATMGPAVSGIVQDCLYNAVRVEIGSILKPAAAVELHAIEVPIMGKKDALRQLL 261

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               +Q  + L+   TKR  E L + L         +H +    +R   +     G   V
Sbjct: 262 Y---EQEGKTLVFARTKRGTERLAKELIRDGFSAAMIHGDRSQSQRNAALAAFDKGSIKV 318

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           LV  ++   GLD+ +   V   D       +     I  +GR  R   + 
Sbjct: 319 LVATDVAARGLDVDDIAHVINFD-----LPQVPEDFIHRVGRTGRAGATG 363


>gi|26986593|ref|NP_758488.1| ATP-dependent RNA helicase DDX19B isoform 2 [Mus musculus]
 gi|19344043|gb|AAH25594.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b [Mus musculus]
 gi|74184696|dbj|BAE27953.1| unnamed protein product [Mus musculus]
 gi|148679534|gb|EDL11481.1| mCG133615, isoform CRA_a [Mus musculus]
          Length = 479

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 269 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNREEKFQ 322

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 323 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 382

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 383 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 441

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 442 MVDSKHSMNIL----NR---IQEHFNKK 462


>gi|319775651|ref|YP_004138139.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|317450242|emb|CBY86458.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
          Length = 444

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 88/260 (33%), Gaps = 34/260 (13%)

Query: 470 LLFVDESHVTIPQISGMYRG-----DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +L  DE+   +    G            RK TL      L S      L  +    L   
Sbjct: 153 MLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL------LFSATLEGELLVDFAERLLND 206

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + V A P   E ++                       S   +++ +   I    ++  R
Sbjct: 207 PVKVDAEPSRRERKKINQWYYHPD--------------SNEHKIKLLARFIE--TEEVTR 250

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++   
Sbjct: 251 GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+DI +   V   D        S  + +  IGR AR       +            + + 
Sbjct: 311 GIDIDDVSHVMNFD-----LPYSADTYLHRIGRTARAGKKGTAVSFVEAHD--YKLLGKI 363

Query: 705 TRRREKQLEHNKKHNINPQS 724
            R  E+ L+      + P++
Sbjct: 364 KRYTEEILKARILAGLEPRT 383


>gi|311257037|ref|XP_003126921.1| PREDICTED: ATP-dependent RNA helicase DDX19B-like isoform 2 [Sus
           scrofa]
          Length = 448

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 238 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNRDEKFQ 291

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 292 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREG 351

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 352 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 410

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 411 MVDSKHSMNIL----NR---IQEHFNKK 431


>gi|301621509|ref|XP_002940090.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Xenopus
           (Silurana) tropicalis]
          Length = 760

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 95/260 (36%), Gaps = 25/260 (9%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRS-ARTQVE 569
             +  T++ SAT  S E++    + +   +R            L    V IR       E
Sbjct: 358 SHQRQTLLFSAT-MSEEVKDLASVSLRNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDRE 416

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            V   +     Q   ++L   TK+ A  +   L    +RV  +H  +   +R+E +R  +
Sbjct: 417 AVACALLTRTFQDH-VMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQTQRLESLRRFK 475

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
             + D+LV  ++   GLDI     V  L         +    +  +GR AR   +   + 
Sbjct: 476 DEQIDILVATDVAARGLDIDGVKTVINL-----TMPGTVKHYVHRVGRTARAGKAGRSVS 530

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                 + +   I        K+ +   K  + PQ V  K  E I     E  A   +  
Sbjct: 531 LVGEEERKMLKEIV-------KKAQAPVKARVIPQDVISKFREKITKSEKEIYAVLQLEK 583

Query: 749 DAQQLSLSKKKGKAHLKSLR 768
           + +++ +S+ +     K L+
Sbjct: 584 EEKEMQMSEAQISVAKKKLQ 603


>gi|269956525|ref|YP_003326314.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305206|gb|ACZ30756.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 712

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   T+  AE++   L E+ I    +  +V   ER +I+  LR G  DVLV  ++   G
Sbjct: 295 IVFTRTRSAAEEVGAALIEKGISAATISGDVAQKEREKIVERLRSGALDVLVATDVAARG 354

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDET 704
           LD+   GLV   D  +E       + +  IGR  R   +   + +     +     I+ T
Sbjct: 355 LDVDRIGLVVNFDIPRE-----AEAYVHRIGRTGRAGRTGRAVSFVTPHERGKLKFIENT 409


>gi|257452998|ref|ZP_05618297.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_5R]
 gi|317059538|ref|ZP_07924023.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_5R]
 gi|313685214|gb|EFS22049.1| transcription-repair coupling factor [Fusobacterium sp. 3_1_5R]
          Length = 983

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 14/150 (9%)

Query: 297 LKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356
             +G      +L+  L +Q+Y R  +   +G + + GD ++I+P + +    R+  FG +
Sbjct: 98  FTVGKEYSITKLVEHLEQQEYTRNYLLEKKGEYSIRGDILDIYP-YTDSSPIRIEFFGEE 156

Query: 357 IEEISEFYPLTGQKIRNVETIKIYANS---------HYVTPRPTLNTAMKYIKEELKMRL 407
           IE IS F     +    ++  K+Y ++              +   +   + I  EL    
Sbjct: 157 IERISYFDIENQKSFHLLKEYKMYTDNNKIEKSLIPFLNLEKKNYSLFFENI--ELLSY- 213

Query: 408 IELEKEGRLLEAQRLEQRITYDLEMLETTG 437
            +LE+   L E +R +Q+   + E L   G
Sbjct: 214 -KLEEMILLEENEREKQKYRKEFENLYENG 242



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 61/157 (38%), Gaps = 6/157 (3%)

Query: 516 EEWNCLRPTT--IVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
           E++  +R     + ++ATP    L     GI    I+         ++      + E++ 
Sbjct: 598 EKFKKIRGNINILAMTATPIPRTLNLSLLGIRDLSIVDTPPDGRKTIKTFFIEKKEENIV 657

Query: 573 DEINLAAQQGLRIL-LTVLTKRMAEDLTEY--LYERNIRVRYMHSEVKTLERIEIIRDLR 629
             I     +  ++  +    KR+ E + E   +    +++ Y+H ++   E    I    
Sbjct: 658 KAILKELAREGQVFYVFNSVKRIEEKVKELEKILPSYVKIDYIHGKMSGKELKYKIEQFE 717

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
             + DVLV   ++  G+DI     + I   +K G  +
Sbjct: 718 NMQIDVLVSTTIIENGIDIENANTMIIEGMEKLGLSQ 754


>gi|227829832|ref|YP_002831611.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.S.2.15]
 gi|227456279|gb|ACP34966.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.S.2.15]
          Length = 360

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 69/185 (37%), Gaps = 19/185 (10%)

Query: 527 VVSATPGSW------ELEQCQGIIVEQIIRPTGLVDPP-VEIR-SARTQVEDVYDEINLA 578
             SAT          E  +    IV    +P   V    V++R     +V  + +EI   
Sbjct: 181 FFSATIPDEIMTLAKEFSKDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLLEEI--- 237

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
              G +IL+   T+  A  L   L  + + V  +  ++    R++     + GK++VLV 
Sbjct: 238 --NGEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            +L   G+DI +   V   D  ++       + I  +GR  R       I +       +
Sbjct: 296 TDLASRGIDIIDVNKVINFDIPRDV-----ETYIHRVGRTGRMGRVGQAITFYTFREADM 350

Query: 698 QLAID 702
              I+
Sbjct: 351 IKRIN 355


>gi|163800537|ref|ZP_02194438.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           AND4]
 gi|159175980|gb|EDP60774.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           AND4]
          Length = 416

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 92/258 (35%), Gaps = 45/258 (17%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             T++ SAT   +E E+ + I  + +  P       VE+  A T  E+V   +    ++ 
Sbjct: 179 KQTMLFSAT---FE-ERIKTIAYKLMDTPI-----EVEVSPANTTAENVKQMVYPVDKKR 229

Query: 583 LR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            R              +L+   TK+ +++L + L    I+   ++ +     R   + D 
Sbjct: 230 KRELLAYLIGSRNWQQVLVFTKTKQGSDELVKELKLDGIKAVSINGDKSQGARQRALDDF 289

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
           + GK   L+  ++   GLDI     V   D             +  IGR  R   S   +
Sbjct: 290 KEGKVRALIATDVAARGLDIQALEQVVNFD-----LPFKAEDYVHRIGRTGRAGKSGLAV 344

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
                  + +  AI+    +R  Q                  +E  +P L+E+      S
Sbjct: 345 SLMSHDEEYLLTAIENLLDKRLPQEW----------------LEGFEPSLIEEVEPERNS 388

Query: 748 IDAQQLSLSKKKGKAHLK 765
              +  S  K+K KA L 
Sbjct: 389 GGRKSRSSEKRKMKAKLA 406


>gi|148702332|gb|EDL34279.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Mus
           musculus]
          Length = 927

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 431 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 490

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 491 VEFTSSG-SVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 549

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 550 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 604

Query: 696 S 696
           S
Sbjct: 605 S 605


>gi|217973506|ref|YP_002358257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217498641|gb|ACK46834.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 467

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 81/239 (33%), Gaps = 28/239 (11%)

Query: 555 VDPPVEIRSART-----QVEDVYDEINLAAQQG-----------LRILLTVLTKRMAEDL 598
           V+ PVEI  AR      Q++     ++   +              + L+ + TK+ A  L
Sbjct: 200 VENPVEIEIARDSANAPQIDQWLITVDKDKKSALLSKLITEQAWEQALIFIQTKQGAAKL 259

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
              L +R I    +HS      R +++ D + GK   LV   +   G+DI     V   D
Sbjct: 260 VSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFLVATGVASRGIDIDALTRVVNYD 319

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRREKQLEHNKK 717
              E         I  IGR  R       I +          AI+   RR    +   + 
Sbjct: 320 LPDE-----ADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCAIE---RRLGHIIVRKEI 371

Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
               P    +++   I   + ++         A +   S+   +   ++   + H +A 
Sbjct: 372 EGFVP---NKEVPVSILDFVPKNTTPKTFKARAPEARTSRPAKEGSFETAHAKKHRSAK 427


>gi|145218895|ref|YP_001129604.1| type III restriction enzyme, res subunit [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205059|gb|ABP36102.1| type III restriction enzyme, res subunit [Chlorobium
           phaeovibrioides DSM 265]
          Length = 556

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 12/153 (7%)

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
             VE + D++     +  R L    +   AE L      R ++   +HS++   +R + +
Sbjct: 363 GMVEVICDKMAGI--KNPRALAFCRSIEHAERLQPLFASRGVKTALLHSQLPREQRFKNL 420

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR----N 681
              R+G  D+L+ I +L EG+DIPE  LVA +         S+   +Q +GR  R     
Sbjct: 421 SGFRMGHIDLLISIEMLNEGIDIPEVNLVAFMRVT-----HSRRIFLQQLGRGLRISKGK 475

Query: 682 VNSKVILY-ADTITKSIQLAIDETTRRREKQLE 713
            N  V+ + AD    +  L I+   + R   +E
Sbjct: 476 ENVLVLDFVADIRRIAAGLEINRLAKERSAGME 508


>gi|160875166|ref|YP_001554482.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160860688|gb|ABX49222.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315267360|gb|ADT94213.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 467

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 80/239 (33%), Gaps = 28/239 (11%)

Query: 555 VDPPVEIRSART-----QVEDVYDEINLAAQQG-----------LRILLTVLTKRMAEDL 598
           V+ PVEI  AR      Q++     ++   +              + L+ + TK+ A  L
Sbjct: 200 VENPVEIEIARDSANAPQIDQWLITVDKDKKSALLSKLITEQAWEQALIFIQTKQGAAKL 259

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
              L +R I    +HS      R +++ D + GK   LV   +   G+DI     V   D
Sbjct: 260 VSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFLVATGVASRGIDIDALTRVVNYD 319

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRREKQLEHNKK 717
              E         I  IGR  R       I +          AI+   RR    +   + 
Sbjct: 320 LPDE-----ADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCAIE---RRLGHIIVRKEI 371

Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
               P    +++   I   + ++         A     S+   +   ++   + H +A 
Sbjct: 372 EGFVP---NKEVPVSILDFVPKNTTPKTFKARAPDARTSRPAKEGSFETAHAKKHRSAK 427


>gi|110833595|ref|YP_692454.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2]
 gi|110646706|emb|CAL16182.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
           borkumensis SK2]
          Length = 459

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 66/207 (31%), Gaps = 23/207 (11%)

Query: 532 PGSWELEQCQGIIVEQIIRPTGLVDPPVEI--RSARTQVEDVYDEINLAAQQG------- 582
           P    L        E      GLV+ PVE+      T  E V   I    ++        
Sbjct: 177 PKRQNLMFSATFSSEIRALAKGLVNDPVEVDISPRNTTTELVTQWIAPVDKKRKPALLTH 236

Query: 583 -------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   ++L+   TK  A  L + L    I    +H       R   + D + GK   
Sbjct: 237 LIQENGWFQVLVFSRTKHGANKLAKQLEANGIEAAAIHGNKSQNARTRALADFKSGKVRA 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI +   V  +D             I   GRA     +  ++ AD    
Sbjct: 297 LVATDIAARGLDIEQLPQVVNVDLP--NVPEDYVHRIGRTGRAGATGQAISLVSADEF-- 352

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINP 722
                + +  R  ++QLE        P
Sbjct: 353 ---QQLKDIERLTQQQLERKIVAGFEP 376


>gi|302552490|ref|ZP_07304832.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302470108|gb|EFL33201.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 721

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 89/247 (36%), Gaps = 35/247 (14%)

Query: 560 EIRSARTQVEDVYDEINLA------------AQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           E+ SA+  V  +   I +             A +  R ++ V T+  A+ + E L +  +
Sbjct: 325 EVDSAQGNVTTMSHHILIVKPKDKAPVTAAIASRKGRTIIFVRTQLGADRIAEQLCDSGV 384

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +   +H  +    R  ++ D + G  + LV  ++   G+ +    LV  +D         
Sbjct: 385 KADALHGGMTQGARTRVLEDFKKGYVNALVATDVAARGIHVDGIDLVLNVDP-----AGD 439

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
               +   GR AR   +  ++      +           RR+      +   ++      
Sbjct: 440 HKDYLHRAGRTARAGRTGTVVSLSLPHQ-----------RRQIFRLM-EDAGVDATRHII 487

Query: 728 KIMEVIDPILLE-DAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           +     DP + E   A +   + A+ +  + ++ +  +  L K++  A        A  +
Sbjct: 488 QSAGAFDPEVAEITGARSMTEVQAESVGNAAQQAEREVAQLTKELERAQR-----RANEL 542

Query: 787 RDEIKRL 793
           R+E  RL
Sbjct: 543 REESDRL 549


>gi|224134991|ref|XP_002327540.1| predicted protein [Populus trichocarpa]
 gi|222836094|gb|EEE74515.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 65/181 (35%), Gaps = 14/181 (7%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQII-----RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E    Q      + II     +    +   V+I S   Q  +   ++
Sbjct: 271 QTLYWSATWPKEVEQLARQSLYNPYKVIIGSPDLKANHAIRQHVDIVS-ENQKYNKLVKL 329

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G RIL+ + TK+  + +T  L         +H +    ER  ++ + + GK  +
Sbjct: 330 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPI 389

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  S    +  IGR  R           T   
Sbjct: 390 MTATDVAARGLDVKDVKYVINYD-----FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAGN 444

Query: 696 S 696
           +
Sbjct: 445 A 445


>gi|146281264|ref|YP_001171417.1| ATP-dependent RNA helicase [Pseudomonas stutzeri A1501]
 gi|145569469|gb|ABP78575.1| probable ATP-dependent RNA helicase [Pseudomonas stutzeri A1501]
          Length = 372

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 84/264 (31%), Gaps = 49/264 (18%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L +           ++ V   Q+  +   +  R     + GF   L +     P  
Sbjct: 62  TPGRLLD--------LYRQNAVGFAQLQALVLDEADRM---LDLGFAEELDALFSALP-- 108

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
                  +  T++ SAT             + Q+ R        VE+       + V   
Sbjct: 109 ------RKRQTLLFSAT---------FSEPIRQMARELLRDPLSVEVSPRNAAAKTVKQW 153

Query: 575 INLAAQQGL--------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +    ++                ++L+ V T++  + L + L  + I    +H +     
Sbjct: 154 LVPVDKKRKSELFLHLLAERCWGQVLVFVKTRKGVDQLVDELQAQGIASDAIHGDKPQAS 213

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+  +   + G+  VLV  ++   GLDI +   V   D             +  IGR  R
Sbjct: 214 RLRALERFKAGEVQVLVATDVAARGLDIHDLPQVVNFDLPIV-----AEDYVHRIGRTGR 268

Query: 681 NVNSKVILYADTITKSIQLAIDET 704
              S   +      +  QLA  ET
Sbjct: 269 AGASGEAISLVAADEVDQLAAIET 292


>gi|126643895|ref|XP_001388135.1| ATP-dependent RNA helicase [Cryptosporidium parvum Iowa II]
 gi|126117212|gb|EAZ51312.1| ATP-dependent RNA helicase, putative [Cryptosporidium parvum Iowa
           II]
          Length = 499

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 17/186 (9%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   TK+  + LT  L      V  +HS +    R+  +   R     +LV   +   G
Sbjct: 317 IIFTATKQQCQMLTSCLEIMGYSVTGLHSLMNQRRRLASLGKFRSKTSKLLVATGVAARG 376

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           LDIP+   V   D     F RS    I  IGR  R   + + L   T      +   E+ 
Sbjct: 377 LDIPDVEFVINYD-----FPRSFEDYIHRIGRVGRANKTGISLTFVTEQDVPYVYEFESK 431

Query: 706 RRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
            ++E +L            +K    EV+  +     A     +  +++  ++K  +A  +
Sbjct: 432 MKKEMEL------------LKLDEDEVLKNMNRVTVAQQKALLMLEEIGFNEKNQEARER 479

Query: 766 SLRKQM 771
            L+  M
Sbjct: 480 KLKVLM 485


>gi|157838001|ref|NP_082350.3| ATP-dependent RNA helicase DDX42 [Mus musculus]
 gi|123796460|sp|Q810A7|DDX42_MOUSE RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|74146847|dbj|BAE41388.1| unnamed protein product [Mus musculus]
 gi|123242261|emb|CAM23778.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Mus musculus]
          Length = 929

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 433 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 492

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 493 VEFTSSG-SVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 606

Query: 696 S 696
           S
Sbjct: 607 S 607


>gi|74694926|sp|Q75C39|DBP5_ASHGO RecName: Full=ATP-dependent RNA helicase DBP5
          Length = 467

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 1/128 (0%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L     +V  +H ++++ +R  +I D R G+  VL+  N+L  G
Sbjct: 320 IIFVQTKQTANMLYTELKREGHQVSILHGDLQSADRDRLIGDFREGRSKVLITTNVLARG 379

Query: 646 LDIPECGLVAILDADKEGFL-RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           +DIP   +V   D           ++ +  IGR  R   + V +      KS +      
Sbjct: 380 IDIPTVSMVVNYDLPMTANGQPDPSTYVHRIGRTGRFGRTGVAISFIHDKKSYETLAAIQ 439

Query: 705 TRRREKQL 712
           +   + Q+
Sbjct: 440 SYFGDIQI 447


>gi|332525252|ref|ZP_08401425.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332108534|gb|EGJ09758.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 520

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 70/203 (34%), Gaps = 31/203 (15%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS---ARTQVEDVYDEINLA 578
              T++ SAT          G + E+++R        +EI S       +E      +  
Sbjct: 179 ARQTVMYSAT-----FAGHVGRLAEELLREPQR----IEIASHTDVHADIEQRLHWADNF 229

Query: 579 AQQG------------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           A +              + ++   T+R A+ L + L E    V  +H       R  +++
Sbjct: 230 AHKNALLDHILTERSVEQAVVFTSTQRDADWLADRLAEMGHHVASLHGGHPQGRRNRVLQ 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK- 685
            LR     +LV  ++   G+D+P    V        G        +  IGR  R   S  
Sbjct: 290 GLRSRDLKILVATDVAARGIDVPTISHVINF-----GLPMKAEDYVHRIGRTGRAGRSGL 344

Query: 686 VILYADTITKSIQLAIDE-TTRR 707
            +  A+     +   I   TT+R
Sbjct: 345 AVTLAERGDAGMIHRIQRFTTQR 367


>gi|237801475|ref|ZP_04589936.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331024334|gb|EGI04391.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 249

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 12/156 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D++  +    + G  +L+   T+   + L + L    +    +H +     R   +   +
Sbjct: 40  DLFIHLMKKHRWGQ-VLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFK 98

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
             +  +LV  ++   GLDI +   V  LD             I  IGR  R   +   I 
Sbjct: 99  SNEVKILVATDVAARGLDIDDLPTVVNLDLPIV-----AEDYIHRIGRTGRAGQTGEAIS 153

Query: 689 YADTITKSIQLAID----ETTRRREKQLEHNKKHNI 720
                   +  AI+    +T  RRE+Q +   +H +
Sbjct: 154 LVCADEVELLSAIEVLTRQTLERREEQ-DFEPEHRV 188


>gi|213409157|ref|XP_002175349.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Schizosaccharomyces japonicus yFS275]
 gi|212003396|gb|EEB09056.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Schizosaccharomyces japonicus yFS275]
          Length = 672

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 81/249 (32%), Gaps = 29/249 (11%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFR---------LPSCMDNRPLRFEEWNCL- 521
            VD     +  +S  Y         + + GF          LP    +          L 
Sbjct: 393 LVDCLERRVFVLSQCYFVVMDEADRMVDMGFEEDVNKALTSLPPSGHDDDEAMVAGEDLL 452

Query: 522 -------RPTTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
                     T++ SAT P   E      L +   + +  I +    V+  VE+ +   +
Sbjct: 453 RSTRPTRARQTVMFSATLPTRVENLAKRYLNKPIMLTIGTIGQAVDRVEQRVEMIADDAK 512

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
                +EI    +    I++ V  KR  E L + LY    RV  +H      +R   I  
Sbjct: 513 RRKRLEEILNTNRYAPPIVVFVNLKRNCESLAKALYNMGWRVVTLHGSKSQEQRERAIEQ 572

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           LR    D+LV  +L   G+DIP   LV   +  K     S       IGR  R       
Sbjct: 573 LRNHSADILVATDLAGRGIDIPNVSLVVNYNMAK-----SIEDYTHRIGRTGRAGKHGTA 627

Query: 688 LYADTITKS 696
           +       +
Sbjct: 628 ITFLGPEDT 636


>gi|216264837|ref|ZP_03436829.1| transcription-repair coupling factor [Borrelia burgdorferi 156a]
 gi|215981310|gb|EEC22117.1| transcription-repair coupling factor [Borrelia burgdorferi 156a]
          Length = 1125

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 96/253 (37%), Gaps = 22/253 (8%)

Query: 173 LLGVTGSGKTFTMAKV--IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L G  G  K F + K+       +  +++     L      + KN       + F   Y 
Sbjct: 32  LTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTL-----DKIKNDLQVITNQIFELNY- 85

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
            + P  Y         K +  NE+I  +         +     +    S +  I    + 
Sbjct: 86  -FSPLVYKG----IGSKSTIFNERIKFL----INFYKKNPGIYITVLKSLLSKIPDKNTL 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            + I +++   ++   ++  +L+   Y++     I G F V G+ I+I+P   E    R+
Sbjct: 137 LKNIYKIEKNTNINTADIEKTLITLGYEKTLRVTIPGEFTVKGEIIDIYP-FGEQNPIRI 195

Query: 351 SMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKE-ELKMRLI 408
           ++  + IEEI +F PLT  K    +   +I      +    T+NT    IK  E K  L 
Sbjct: 196 ALNFDKIEEIKKFNPLTQLKHDNEILEFQILPKKEIIWDDKTINTLKTKIKSVEYKKILE 255

Query: 409 E--LEKEGRLLEA 419
           E   +KE +  E 
Sbjct: 256 ELDFKKETKTEEM 268



 Score = 47.0 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 22/190 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +     I P   V     + S    +  +   I     +
Sbjct: 733 CLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESFSELL--IKHAIESELSR 790

Query: 582 GLRILL-------TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             ++ L           K + E LT Y      R+  +H ++   E   I+ +     + 
Sbjct: 791 DGQVFLVNHNIEELYYLKTLIERLTPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQ 845

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  G+DIP    + I +A+K G  +    L Q  GR  R        +    +
Sbjct: 846 ILLATTIIENGIDIPNANTIIINNANKFGLAQ----LYQLKGRVGRGSQKAYAYFLYQDS 901

Query: 695 KSI-QLAIDE 703
           + + + +I+ 
Sbjct: 902 EKLNERSIER 911


>gi|120556730|ref|YP_961081.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120326579|gb|ABM20894.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8]
          Length = 443

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 72/209 (34%), Gaps = 16/209 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQG-----IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           +   ++ SAT  +      QG     + VE   R T        +       +       
Sbjct: 177 KRQNLLFSATFSNEIRTLAQGLLDNPVQVEVAARNTTAEKVKQSVYPVDQSQKTALLSKL 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +      ++L+   TK  A  LT+ L +  I    +H       R   + D + G+  VL
Sbjct: 237 VRDNAWDQVLVFTRTKHGANRLTQKLEKDGITAAAIHGNKSQGARTRALADFKAGEVRVL 296

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD--TIT 694
           V  ++   GLDI +   V   +             I   GRA  + ++  ++ AD   + 
Sbjct: 297 VATDIAARGLDIKQLPQVVNFELP--NVPEDYVHRIGRTGRAGESGHALSLVSADEGKLL 354

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQ 723
             I+  I       +KQL   +     P+
Sbjct: 355 AGIEKLI-------KKQLPRKEVEGFEPK 376


>gi|161486658|ref|NP_933453.2| ATP-dependent RNA helicase SrmB [Vibrio vulnificus YJ016]
          Length = 408

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 77/212 (36%), Gaps = 21/212 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVEDVYDEINLAAQ 580
           R  T++ SAT    E +  +G   + +  P  +   P    R   TQ     D +     
Sbjct: 180 RKQTMLFSAT---LEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRADSMEHKLA 236

Query: 581 --------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                   Q  R ++ + T+    DL  +L    +   ++  E+    R   I   R G 
Sbjct: 237 LLKDIINNQAERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGS 296

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            +VL+  ++   G+D+P+   V   D  +     S    +  IGR AR       I   +
Sbjct: 297 VNVLLATDVAARGIDLPDVSHVVNFDMPR-----SADVYLHRIGRTARAGKKGNAISIVE 351

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
              + +   +D   R  ++ ++      + PQ
Sbjct: 352 AHDQPM---MDRVARYVKEDIKERFVKELRPQ 380


>gi|149908418|ref|ZP_01897081.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36]
 gi|149808581|gb|EDM68516.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36]
          Length = 449

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 74/197 (37%), Gaps = 14/197 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT      +  +G+I   VE  + P       VE  +     + + +     
Sbjct: 178 KRQNLLFSATFSDDIRQLARGLINDPVEISVTPRNAAAKSVEQWMHPVDKKKKALLLTHL 237

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +      ++L+   TK  A  LT++L E+ I    +H       R + + + + G+   L
Sbjct: 238 IKENDWKQVLVFTKTKHGANKLTKHLEEQGINAAAIHGNKSQSARTKALANFKSGEVRAL 297

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           +  ++   G+DI +   V   D             +  IGR  R  +    +        
Sbjct: 298 IATDIAARGIDIVQLPQVVNFD-----LPNVPEDYVHRIGRTGRAGSEGTAISLVC-HDE 351

Query: 697 IQL--AIDE-TTRRREK 710
           ++   AI++ T +  E+
Sbjct: 352 MKELVAIEQLTQKHLER 368


>gi|325185113|emb|CCA19605.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 711

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 13/186 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT----GLVDPPVEIRSA-----RTQVEDVYDE 574
            +++ SAT     +EQ    I+   I+ T    G  +  +            + E +   
Sbjct: 363 QSLLFSATFRPR-IEQLARAILHNPIKVTVGKAGQANEVISQIPVVLLNHGKKWEWLMKN 421

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +     QG R+L+   +K   E+L++ L   + R   +H +    +R   + D + GK  
Sbjct: 422 LERIVDQG-RVLIFANSKVGCEELSKNLDAMHYRCCLLHGDKSQYDRSSALADFKNGKCP 480

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           V+V  ++   GLDI +   V   D  K   +      I   GR   +     + Y     
Sbjct: 481 VMVATDVASRGLDIRDVKTVVNYDVAKNIDIH--VHRIGRTGRMGVDGFEPGVAYTLITN 538

Query: 695 KSIQLA 700
           K  Q A
Sbjct: 539 KETQFA 544


>gi|302847755|ref|XP_002955411.1| DEAD-box RNA helicase, ATP-dependent [Volvox carteri f.
           nagariensis]
 gi|300259253|gb|EFJ43482.1| DEAD-box RNA helicase, ATP-dependent [Volvox carteri f.
           nagariensis]
          Length = 535

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G RIL+   TKR  ++L   L         +H +    ER  ++++ + G   +++  ++
Sbjct: 358 GRRILIFCETKRGCDELVRQLRTDGYPALGLHGDKSQQERDWVLQEFKNGTHPIMLATDV 417

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
              GLD+ +  +V   D  K     +    +  IGR  R        
Sbjct: 418 AARGLDVKDIKVVVNYDMPK-----TAEDYVHRIGRTGRAGAHGTAY 459


>gi|226321322|ref|ZP_03796849.1| transcription-repair coupling factor [Borrelia burgdorferi Bol26]
 gi|226233118|gb|EEH31870.1| transcription-repair coupling factor [Borrelia burgdorferi Bol26]
          Length = 1125

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 96/253 (37%), Gaps = 22/253 (8%)

Query: 173 LLGVTGSGKTFTMAKV--IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L G  G  K F + K+       +  +++     L      + KN       + F   Y 
Sbjct: 32  LTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTL-----DKIKNDLQVITNQIFELNY- 85

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
            + P  Y         K +  NE+I  +         +     +    S +  I    + 
Sbjct: 86  -FSPLVYKG----IGSKSTIFNERIKFL----INFYKKNPGIYITVLKSLLSKIPDKNTL 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            + I +++   ++   ++  +L+   Y++     I G F V G+ I+I+P   E    R+
Sbjct: 137 LKNIYKIEKNTNINTADIEKTLITLGYEKTLRVTIPGEFTVKGEIIDIYP-FGEQNPIRI 195

Query: 351 SMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKE-ELKMRLI 408
           ++  + IEEI +F PLT  K    +   +I      +    T+NT    IK  E K  L 
Sbjct: 196 ALNFDKIEEIKKFNPLTQLKHDNEILEFQILPKKEIIWDDKTINTLKTKIKSVEYKKILE 255

Query: 409 E--LEKEGRLLEA 419
           E   +KE +  E 
Sbjct: 256 ELDFKKETKTEEM 268



 Score = 47.0 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 22/190 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +     I P   V     + S    +  +   I     +
Sbjct: 733 CLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESFSELL--IKHAIESELSR 790

Query: 582 GLRILL-------TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             ++ L           K + E LT Y      R+  +H ++   E   I+ +     + 
Sbjct: 791 DGQVFLVNHNIEELYYLKTLIERLTPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQ 845

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  G+DIP    + I +A+K G  +    L Q  GR  R        +    +
Sbjct: 846 ILLATTIIENGIDIPNANTIIINNANKFGLAQ----LYQLKGRVGRGSQKAYAYFLYQDS 901

Query: 695 KSI-QLAIDE 703
           + + + +I+ 
Sbjct: 902 EKLNERSIER 911


>gi|154273987|ref|XP_001537845.1| hypothetical protein HCAG_07267 [Ajellomyces capsulatus NAm1]
 gi|150415453|gb|EDN10806.1| hypothetical protein HCAG_07267 [Ajellomyces capsulatus NAm1]
          Length = 496

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TK  A+ + +YLY   +    +HS+    ER + +R  +  K  ++V   +  
Sbjct: 303 RTLVFVNTKTQADLIDDYLYNMGLPSTSIHSDRTQREREDALRAFKTAKSPIMVATGVSA 362

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            GLDI     V   D             I  IGR AR  N  +        ++  +A D
Sbjct: 363 RGLDIKNVMHVINFDMPSATHG-GIEEYIHRIGRTARIGNEGLATSFYNHDRNSDIAAD 420


>gi|125549135|gb|EAY94957.1| hypothetical protein OsI_16765 [Oryza sativa Indica Group]
          Length = 484

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 74/219 (33%), Gaps = 35/219 (15%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT             P  + +     + ++ I +    V+   ++         
Sbjct: 285 QILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKVH-------- 336

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   +    E L + + E      Y+H+++    R  +  D R 
Sbjct: 337 CLNTLFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 395

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F +S  + +  +GR+ R  +  + +  
Sbjct: 396 GACRNLVCTDLFTRGIDIQAVNVVINFD-----FPKSAETYLHRVGRSGRFGHLGLAVNL 450

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
            T      L        R +Q    +   I PQ +   I
Sbjct: 451 ITYEDRFNL-------YRIEQELGTEIKPIPPQ-IDRAI 481


>gi|60551600|gb|AAH91427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Rattus norvegicus]
          Length = 380

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 69/196 (35%), Gaps = 29/196 (14%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 23  DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 81

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 82  FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICVCFYQ 136

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 137 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 183

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 184 AVDFFRPSAQRLIEEK 199


>gi|26991657|ref|NP_747082.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|24986754|gb|AAN70546.1|AE016697_1 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
          Length = 626

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +        R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            ++ +    +H       R + + D +     VLV  ++   GLDI +   V   +    
Sbjct: 270 EKQGLTAAAIHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                +   +  IGR  R   S   I       + +  +I+  T++R
Sbjct: 326 -LPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERVTKQR 371


>gi|148550055|ref|YP_001270157.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148514113|gb|ABQ80973.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 627

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +        R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            ++ +    +H       R + + D +     VLV  ++   GLDI +   V   +    
Sbjct: 270 EKQGLTAAAIHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                +   +  IGR  R   S   I       + +  +I+  T++R
Sbjct: 326 -LPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERVTKQR 371


>gi|294630456|ref|ZP_06709016.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
 gi|292833789|gb|EFF92138.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
          Length = 514

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 7/134 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D +      A +  R ++ + TK   + LT++L    +R   +H      +R   +   +
Sbjct: 302 DKHRTTTEIAARDGRTIMFLDTKHAVDRLTKHLLNSGVRAAGLHGGKSQPQRNRTLTQFK 361

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+  VLV  N+   G+ +    LV  +D             +   GR AR   S  ++ 
Sbjct: 362 TGQVTVLVATNVAARGIHVDNLDLVVNVDP-----PTDHKDYLHRGGRTARAGESGSVVT 416

Query: 690 ADTITKSIQLAIDE 703
             T  +  + A++ 
Sbjct: 417 LVTPDQ--RRAMNR 428


>gi|271967261|ref|YP_003341457.1| DEAD/DEAH box helicase [Streptosporangium roseum DSM 43021]
 gi|270510436|gb|ACZ88714.1| DEAD/DEAH box helicase domain-containing protein [Streptosporangium
           roseum DSM 43021]
          Length = 571

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 57/143 (39%), Gaps = 7/143 (4%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
               +D +      A +  R ++ V T+   + L + L +  I+   +H   +  +R  I
Sbjct: 242 EVHRDDKFPVTAEIANREGRTIIFVRTQHGVDRLCKQLAQVGIKAGGLHGGKRQNQRTRI 301

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + + G  +VLV  ++   G+ +    LV  +D       +   S +   GR AR    
Sbjct: 302 LAEFKEGAINVLVCTDVAARGIHVDNISLVLHVDP-----PQDHKSYLHRGGRTARAGEK 356

Query: 685 KVILYADTITKSIQLAIDETTRR 707
             ++      +  + + D  TRR
Sbjct: 357 GTVMTLVLPNE--RRSTDAMTRR 377


>gi|239614103|gb|EEQ91090.1| DEAD/DEAH box RNA helicase [Ajellomyces dermatitidis ER-3]
          Length = 587

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V +K  A+ L +YLY   +    +HS+    ER + +R  +  K  ++V   +  
Sbjct: 401 RTLVFVNSKAQADLLDDYLYNMGLPSTSIHSDRTQREREDALRAFKTAKSPIMVATGVSA 460

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            GLDI     V   D             I  IGR AR  N  +        ++  +A D
Sbjct: 461 RGLDIKNVMHVINFDMPSAAHG-GIEEYIHRIGRTARIGNEGLASSFYNHERNSDIAAD 518


>gi|221215428|ref|ZP_03588392.1| dead/deah box helicase [Burkholderia multivorans CGD1]
 gi|221164612|gb|EED97094.1| dead/deah box helicase [Burkholderia multivorans CGD1]
          Length = 506

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I ++Q +     +   V     R   + + D + 
Sbjct: 232 QTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIAQTVHYVDDRDHKDRLLDHLL 291

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             A      ++   TK  A+ L   L +   +   +H ++    R   IR LR  +  VL
Sbjct: 292 RDAALDQ-AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVL 350

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S + +    +  +
Sbjct: 351 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGIAVSL--VHHA 403

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 404 EQGALKRIER 413


>gi|171911382|ref|ZP_02926852.1| DNA/RNA helicase, ATP-dependent, DEAD-box family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 314

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 100/262 (38%), Gaps = 29/262 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ + ++   D        I  +   +  R     + GF LP   D R +  E
Sbjct: 41  TPGRLLDFMSDGTVNLAD--------IEVLILDEVDRM---LDMGF-LP---DVRRIVSE 85

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS------ARTQVED 570
                   T+  SAT         +  + E      GL   P E  S      A  Q E+
Sbjct: 86  T--PKSRQTLFFSATMPPQIKGLAEWALREPESIEVGLRFSPAETVSHYMYPVASDQREE 143

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERN-IRVRYMHSEVKTLERIEIIRDLR 629
           +   +  + +    +++    K  A+ L   + +    +V  MHS++   +R + ++  R
Sbjct: 144 LLLALLQSTEF-HSVMIFTRMKVHADRLFAAIQQTGKYKVAVMHSDINQRDREKALQGFR 202

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G FD++V  +L   GLD+     V      +          I   GRA +  ++  +  
Sbjct: 203 DGAFDIIVATDLAARGLDVSGVTHVINYMVPEN--PEDYVHRIGRTGRAQKEGDAFTLFA 260

Query: 690 ADTIT--KSIQLAIDETTRRRE 709
           AD I+   SI+  ID+   RR+
Sbjct: 261 ADEISYVHSIERLIDQKIERRK 282


>gi|146300368|ref|YP_001194959.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium
           johnsoniae UW101]
 gi|146154786|gb|ABQ05640.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 453

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 14/188 (7%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV------EIRSARTQVEDVYDE 574
                ++VSAT    E+ +   ++   ++      +          +  ++ ++E +++ 
Sbjct: 166 KVNKRVLVSAT-SDIEIPKYTRVVNPTVLDFIPEEEEKANLSMKMIVSPSKDKLESLFNL 224

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I   + +    ++    +  AE +++ L E+ I   Y H  +   ER   +   R G   
Sbjct: 225 I--CSLKSESAIIFCNHRDAAERISDTLNEKGIYATYYHGGMDQDERERALIQFRNGSIS 282

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
            L+  +L   GLDIPE   V             +       GR AR   +         +
Sbjct: 283 YLITTDLAARGLDIPEMKHVI-----HYHLPLKEDEFTHRNGRTARMQATGTAYIIVHES 337

Query: 695 KSIQLAID 702
           +     ID
Sbjct: 338 EKKLDYID 345


>gi|68249479|ref|YP_248591.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 86-028NP]
 gi|68057678|gb|AAX87931.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 86-028NP]
          Length = 418

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 89/252 (35%), Gaps = 34/252 (13%)

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +Y+ +  ++ +DE  V +         +  R   L   GF        R +R+    C 
Sbjct: 148 IDYV-KQGVIGLDEIQVVV-------LDEADRMFDL---GFI-------RDIRYLLRKCP 189

Query: 522 RPT---TIVVSATPGSWELEQCQGIIVE------QIIRPTGLVDPPVEIRSARTQVEDVY 572
            P    T++ SAT      E     + +      +  + TG      E+     Q +   
Sbjct: 190 APQARLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKE-ELFYPSNQDKMAL 248

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               +  +   R ++   TK   E++  YL     RV  +  +V   +R+ +++    G 
Sbjct: 249 LLTLMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGD 308

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYAD 691
            D+LV  ++   GL I +   V   D         +   +  IGR  R   S V I +A 
Sbjct: 309 LDILVATDVAARGLHISDVTHVFNYD-----LPDDREDYVHRIGRTGRAGESGVSISFAC 363

Query: 692 TITKSIQLAIDE 703
                    I+E
Sbjct: 364 EEYAMNLPGIEE 375


>gi|15898827|ref|NP_343432.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|229578785|ref|YP_002837183.1| DEAD/DEAH box helicase [Sulfolobus islandicus Y.G.57.14]
 gi|238619197|ref|YP_002914022.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.4]
 gi|284997087|ref|YP_003418854.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.D.8.5]
 gi|13815318|gb|AAK42222.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|228009499|gb|ACP45261.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.G.57.14]
 gi|238380266|gb|ACR41354.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.4]
 gi|284444982|gb|ADB86484.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.D.8.5]
          Length = 360

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 69/185 (37%), Gaps = 19/185 (10%)

Query: 527 VVSATPGSW------ELEQCQGIIVEQIIRPTGLVDPP-VEIR-SARTQVEDVYDEINLA 578
             SAT          E  +    IV    +P   V    V++R     +V  + +EI   
Sbjct: 181 FFSATIPDEIMTLAKEFSKDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLLEEI--- 237

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
              G +IL+   T+  A  L   L  + + V  +  ++    R++     + GK++VLV 
Sbjct: 238 --NGEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            +L   G+DI +   V   D  ++       + I  +GR  R       I +       +
Sbjct: 296 TDLASRGIDIIDVNKVINFDIPRDV-----ETYIHRVGRTGRMGRVGQAITFYTFREADM 350

Query: 698 QLAID 702
              I+
Sbjct: 351 IKRIN 355


>gi|86147398|ref|ZP_01065711.1| ATP-dependent RNA helicase SrmB [Vibrio sp. MED222]
 gi|218708540|ref|YP_002416161.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus LGP32]
 gi|85834826|gb|EAQ52971.1| ATP-dependent RNA helicase SrmB [Vibrio sp. MED222]
 gi|218321559|emb|CAV17511.1| ATP-dependent RNA helicase srmB [Vibrio splendidus LGP32]
          Length = 421

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 21/212 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR--TQVEDVYDEINLA- 578
           R  T++ SAT    E +  +G   E +++    +D    +R  +  TQ     D      
Sbjct: 180 RKQTLLFSAT---LEGKGIEGFT-EDLLKNPAEIDAKSSLRERKKITQWYHRADSAKHKL 235

Query: 579 -------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                   +Q  R ++ + T+    DL   L    I   ++  E+    R   I   R G
Sbjct: 236 DILKHIITEQAERSIIFLKTRDRLGDLRAQLESAQIPCVWIQGEMPQDRRNNAISRFRDG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
             +VL+  ++   G+D+P+   V   D  +     +    +  IGR AR       +   
Sbjct: 296 SINVLLATDVAARGIDLPDVSHVINYDMPR-----TADVYLHRIGRTARAGKKGNAVSII 350

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
                +   I+   R  E  ++      + P 
Sbjct: 351 EAHDQLM--IERVARYTEDAIKERFIEGMRPT 380


>gi|254229148|ref|ZP_04922567.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262395499|ref|YP_003287352.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151938233|gb|EDN57072.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262339093|gb|ACY52887.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 419

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 85/264 (32%), Gaps = 32/264 (12%)

Query: 457 PPPTLFEYI-------PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
            P  L +++        + S+L +DE+   +            R         RLP    
Sbjct: 130 TPGRLLDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFR---------RLP-AEK 179

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
              L    +      TI         E+E        + ++          +     + +
Sbjct: 180 QILLFSATFEKRIK-TIAYKLMESPVEVEVSPANTTAETVKQM--------VYPVDKKRK 230

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                  + ++   ++L+   TK+ +++L + L    I+   ++ +     R   + + +
Sbjct: 231 RELLAYLIGSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFK 290

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            GK   L+  ++   GLDI E   V   D   +         +  IGR  R   S   + 
Sbjct: 291 QGKVRALIATDVAARGLDIQELEQVVNFDMPFK-----AEDYVHRIGRTGRAGKSGLAVS 345

Query: 689 YADTITKSIQLAIDETTRRREKQL 712
                 + +  AI+    +R  Q 
Sbjct: 346 LMSRDEEYLLHAIENLLDQRLPQE 369


>gi|312149190|gb|ADQ29261.1| transcription-repair coupling factor [Borrelia burgdorferi N40]
          Length = 1125

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 96/253 (37%), Gaps = 22/253 (8%)

Query: 173 LLGVTGSGKTFTMAKV--IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L G  G  K F + K+       +  +++     L      + KN       + F   Y 
Sbjct: 32  LTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTL-----DKIKNDLQVITNQIFELNY- 85

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
            + P  Y         K +  NE+I  +         +     +    S +  I    + 
Sbjct: 86  -FSPLVYKG----IGSKSTIFNERIKFL----INFYKKNPGIYITVLKSLLSKIPDKNTL 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            + I +++   ++   ++  +L+   Y++     I G F V G+ I+I+P   E    R+
Sbjct: 137 LKNIYKIEKNTNINTADIEKTLITLGYEKTLRVTIPGEFTVKGEIIDIYP-FGEQNPIRI 195

Query: 351 SMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKE-ELKMRLI 408
           ++  + IEEI +F PLT  K    +   +I      +    T+NT    IK  E K  L 
Sbjct: 196 ALNFDKIEEIKKFNPLTQLKHDNEILEFQILPKKEIIWDDKTINTLKTKIKSVEYKKILE 255

Query: 409 E--LEKEGRLLEA 419
           E   +KE +  E 
Sbjct: 256 ELDFKKETKTEEM 268



 Score = 47.0 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 22/190 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +     I P   V     + S    +  +   I     +
Sbjct: 733 CLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESFSELL--IKHAIESELSR 790

Query: 582 GLRILL-------TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             ++ L           K + E LT Y      R+  +H ++   E   I+ +     + 
Sbjct: 791 DGQVFLVNHNIEELYYLKTLIERLTPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQ 845

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  G+DIP    + I +A+K G  +    L Q  GR  R        +    +
Sbjct: 846 ILLATTIIENGIDIPNANTIIINNANKFGLAQ----LYQLKGRVGRGSKKAYAYFLYQDS 901

Query: 695 KSI-QLAIDE 703
           + + + +I+ 
Sbjct: 902 EKLNERSIER 911


>gi|254719036|ref|ZP_05180847.1| ATP-dependent RNA helicase DDX17 [Brucella sp. 83/13]
 gi|265984026|ref|ZP_06096761.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|264662618|gb|EEZ32879.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 482

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 16/191 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVED------VYD 573
            T+  SAT    E+ +     +   +R            V  R  ++  +D      + D
Sbjct: 180 QTLFFSAT-MPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRD 238

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I          ++    K+   +L   L         +H ++    R+ ++   + GK 
Sbjct: 239 LIQSEGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKL 298

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIP+   V   D             +  IGR  R   S       T 
Sbjct: 299 RLLVASDVAARGLDIPDVSHVFNFDVPI-----HAEDYVHRIGRTGRAGRSGKAFTIVTS 353

Query: 694 TKSIQLAIDET 704
           + +  LA  E+
Sbjct: 354 SDTKYLAAIES 364


>gi|152013480|sp|A5E1W4|DBP3_LODEL RecName: Full=ATP-dependent RNA helicase DBP3
          Length = 535

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 72/183 (39%), Gaps = 20/183 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT----------GLVDPPVEIRSARTQVE---- 569
            T++ +AT    E+ +     + Q ++ T            +   VE+   + Q E    
Sbjct: 303 QTLMFTAT-WPKEVRELANNFMNQPVKVTIGDRDELSANKRITQIVEVLDDKFQKEKKLI 361

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           ++  +         +IL+  L K+ A  +   L+    +V  +H ++   +R + ++  +
Sbjct: 362 NLLQKYQNTGNGDNKILVFALYKKEASRIESLLHRNKFKVAAIHGDLSQQQRTQALQSFK 421

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+ ++L+  ++   GLDIP    V  L      F  +    +  +GR  R   + +   
Sbjct: 422 SGECNLLLATDVAARGLDIPNVKYVINL-----TFPLTIEDYVHRLGRTGRAGQTGIAHT 476

Query: 690 ADT 692
             T
Sbjct: 477 FFT 479


>gi|152993618|ref|YP_001359339.1| transcription-repair coupling factor [Sulfurovum sp. NBC37-1]
 gi|151425479|dbj|BAF72982.1| transcription-repair coupling factor [Sulfurovum sp. NBC37-1]
          Length = 994

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 79/216 (36%), Gaps = 16/216 (7%)

Query: 185 MAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTY 244
           + + +E ++   +++  +   A Q+    +       V   +         AYV     +
Sbjct: 7   IYEYLENVKEEKLLLCKDDKEALQIRDVAQLLGFDTFVLPDIRVNMGEDLRAYVEDLQLF 66

Query: 245 IEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVE 304
             + S+ +               +R   ++    + +      E +   +  L+ GD+V+
Sbjct: 67  FAQLSAYHA-------------SDRKKILISPVRTVLLPFPKPEFFRNKV--LEFGDTVD 111

Query: 305 QKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFY 364
             EL  +L +  Y   DI   RG     GD I+IFP   E   +R+S+F ++IE I  + 
Sbjct: 112 LNELKDTLYQWGYHFTDIAASRGEVSFRGDIIDIFPIDAE-KPYRISLFDDEIESIQHYD 170

Query: 365 PLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
             T ++         +  +     +       K ++
Sbjct: 171 EATQKRFEEELDSVEFTPAFLALDKKQYEALRKRVE 206



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 76/201 (37%), Gaps = 15/201 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIV---EQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             + +SATP    L      +    E +  PT        ++S   +V  + + I    +
Sbjct: 627 HLLSMSATPIPRSLNMALSEVKSFSEILTPPTERQGVRTFVKSYDDKV--IKEAILREMR 684

Query: 581 QGLRILLTVLTKRMAEDLTEYLYER--NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G +I     +    ++  + L E    +RV  +HS++   E  + +     G++DVL+ 
Sbjct: 685 RGGQIFYVFNSIAGIDEKKKQLLEILPKLRVAVLHSKISAKETEDEMLKFEDGEYDVLLS 744

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +++  G+ +P    + +  AD  G       L Q  GR  R        +  T      
Sbjct: 745 TSIVESGIHMPHANTMIVEGADNFGI----ADLHQLRGRVGRGGREGYCYFMVTDKDR-- 798

Query: 699 LAIDETTRRREKQLEHNKKHN 719
             + E  ++R   LE +    
Sbjct: 799 --LTENAKKRLIALESHSDLG 817


>gi|329663131|ref|NP_001192982.1| ATP-dependent RNA helicase DDX50 [Bos taurus]
 gi|297491479|ref|XP_002698910.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Bos taurus]
 gi|296472173|gb|DAA14288.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Bos taurus]
          Length = 737

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 87/257 (33%), Gaps = 34/257 (13%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 320 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 379

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 380 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 493

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                         R   QL +  +K  I  + V   +   +D +  +            
Sbjct: 494 P-------------RERGQLRYVEQKAGITFKRVG--VPSTMDLVKSKSMDAIRSLASVS 538

Query: 752 QLSLS--KKKGKAHLKS 766
             ++   +   +  ++ 
Sbjct: 539 YAAVDFFRPSAQRLIEE 555


>gi|23501822|ref|NP_697949.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
 gi|161618894|ref|YP_001592781.1| ATP-dependent RNA helicase DDX17 [Brucella canis ATCC 23365]
 gi|254701699|ref|ZP_05163527.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           suis bv. 5 str. 513]
 gi|254704242|ref|ZP_05166070.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           suis bv. 3 str. 686]
 gi|256061039|ref|ZP_05451195.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           neotomae 5K33]
 gi|256369364|ref|YP_003106872.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|260566511|ref|ZP_05836981.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|261325038|ref|ZP_05964235.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261752249|ref|ZP_05995958.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261754908|ref|ZP_05998617.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|294852292|ref|ZP_06792965.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
 gi|23347756|gb|AAN29864.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
           1330]
 gi|161335705|gb|ABX62010.1| Probable ATP-dependent RNA helicase DDX17 [Brucella canis ATCC
           23365]
 gi|255999524|gb|ACU47923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|260156029|gb|EEW91109.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|261301018|gb|EEY04515.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261742002|gb|EEY29928.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261744661|gb|EEY32587.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|294820881|gb|EFG37880.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
          Length = 482

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 16/191 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVED------VYD 573
            T+  SAT    E+ +     +   +R            V  R  ++  +D      + D
Sbjct: 180 QTLFFSAT-MPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRD 238

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I          ++    K+   +L   L         +H ++    R+ ++   + GK 
Sbjct: 239 LIQSEGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKL 298

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIP+   V   D             +  IGR  R   S       T 
Sbjct: 299 RLLVASDVAARGLDIPDVSHVFNFDVPI-----HAEDYVHRIGRTGRAGRSGKAFTIVTS 353

Query: 694 TKSIQLAIDET 704
           + +  LA  E+
Sbjct: 354 SDTKYLAAIES 364


>gi|327353874|gb|EGE82731.1| DEAD/DEAH box RNA helicase [Ajellomyces dermatitidis ATCC 18188]
          Length = 585

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V +K  A+ L +YLY   +    +HS+    ER + +R  +  K  ++V   +  
Sbjct: 399 RTLVFVNSKAQADLLDDYLYNMGLPSTSIHSDRTQREREDALRAFKTAKSPIMVATGVSA 458

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            GLDI     V   D             I  IGR AR  N  +        ++  +A D
Sbjct: 459 RGLDIKNVMHVINFDMPSAAHG-GIEEYIHRIGRTARIGNEGLASSFYNHERNSDIAAD 516


>gi|331246301|ref|XP_003335784.1| DEAD-box ATP-dependent RNA helicase 35 [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309314774|gb|EFP91365.1| DEAD-box ATP-dependent RNA helicase 35 [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 728

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 74/206 (35%), Gaps = 17/206 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            + + GF      ++       +   +  T++ SAT      +  +  +V+ I+   G  
Sbjct: 459 RMVDMGF------EDDVRNIMSFFKRQRQTLLFSATMPKTIRDFAENSLVQPIVVNVGRA 512

Query: 555 ----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + Q   +   +    +    +++    K   +D+ EYL  + +   
Sbjct: 513 GAANLDVIQEVEYVK-QEAKMVYLLECLQKTPPPVIIFSDNKNEVDDIQEYLLLKGVEAV 571

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER   I+  + GK DV+V   +  +GLD  E   V       E       +
Sbjct: 572 AIHGSKTQEEREYAIKSFKSGKKDVMVASGVASKGLDFAEIQHVINFTMPGE-----IEN 626

Query: 671 LIQTIGRAARNVNSKVILYADTITKS 696
            +  IGR  R+  + +      +   
Sbjct: 627 YVHQIGRTGRSGKTGIATTFINMNSP 652


>gi|242046786|ref|XP_002461139.1| hypothetical protein SORBIDRAFT_02g041390 [Sorghum bicolor]
 gi|241924516|gb|EER97660.1| hypothetical protein SORBIDRAFT_02g041390 [Sorghum bicolor]
          Length = 546

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L + L   ++RV  +H+++   +R + + +LR GK  VL+   ++  
Sbjct: 394 VLIFVQSKERAKELYKELAFDDVRVDAIHADLNEQQRQDAVDNLRAGKTWVLIATEVIAR 453

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSIQLAI 701
           G+D      V   D     F  S  + I  IGR  R     + I +     K     I
Sbjct: 454 GMDFKGVNCVINYD-----FPESAAAYIHRIGRCGRAGRFGEAITFFTEEDKPFLRNI 506


>gi|224826248|ref|ZP_03699350.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224601349|gb|EEG07530.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 456

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 71/194 (36%), Gaps = 13/194 (6%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVE--IRSARTQVEDVYDE 574
               T++ SAT         +  + +    ++ R     +  VE  + S  +Q +     
Sbjct: 181 RTRQTLLFSATFAPEIKRLAEEFMHDPQTVEVAR-QNSTNAQVEQLVFSVDSQRKRYLLS 239

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             +  +Q  ++++   TK  A+ L   L         +H +     R+E +   + G+  
Sbjct: 240 HLIRERQMGQVIVFCKTKLSADQLARDLKRDGHAAEAIHGDKAQGARLETLTAFKNGEVK 299

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           VLV  ++   GLDI E   V   +        +    +  IGR  R   S V I      
Sbjct: 300 VLVATDVAARGLDISELPYVVNFE-----LPNAPEDYVHRIGRTGRAGASGVAISLMGQD 354

Query: 694 TKSIQLAIDETTRR 707
                 AI++ TR+
Sbjct: 355 EGKQLEAIEKLTRQ 368


>gi|222148785|ref|YP_002549742.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
 gi|221735771|gb|ACM36734.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
          Length = 516

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 64/188 (34%), Gaps = 14/188 (7%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDV-----YDEI 575
            T+  SAT  P   +L        E+I + P       V  R    Q +D        +I
Sbjct: 172 QTLFFSATMPPEIQKLADKFLQNPERIEVAPPSSTAKTVTQRLVACQNKDYEKRSTLRDI 231

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A       ++    K+   DL   L      V  +H ++    R  ++   +  +  +
Sbjct: 232 IRAQDDLKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTNMLAGFKDNQITL 291

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP+   V   D             +  IGR  R   S       T + 
Sbjct: 292 LVASDVAARGLDIPDVSHVFNFDVPI-----HAEDYVHRIGRTGRAGRSGRAFTLVTKSD 346

Query: 696 SIQL-AID 702
           +  L AI+
Sbjct: 347 AKYLDAIE 354


>gi|254252033|ref|ZP_04945351.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158]
 gi|124894642|gb|EAY68522.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158]
          Length = 523

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 67/190 (35%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I ++Q +     +   V     R   + + D + 
Sbjct: 248 QTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIAQTVHYVDDRDHKDRLLDHLL 307

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                    ++   TK  A+ L   L +       +H ++    R   IR LR  +  VL
Sbjct: 308 RDTALDQ-AIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARNRTIRALRERRVRVL 366

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S + +    +  +
Sbjct: 367 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGIAVSL--VHHA 419

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 420 EQGALKRIER 429


>gi|109129173|ref|XP_001107762.1| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 5 [Macaca
           mulatta]
          Length = 484

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 274 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 327

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 328 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 387

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 388 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 446

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 447 MVDSKHSMNIL----NR---IQEHFNKK 467


>gi|89053691|ref|YP_509142.1| DEAD/DEAH box helicase-like [Jannaschia sp. CCS1]
 gi|88863240|gb|ABD54117.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
          Length = 644

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 64/194 (32%), Gaps = 20/194 (10%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIR-----------SARTQVE 569
            T+  SAT  P    +        E+I +         +E R            A+ + +
Sbjct: 189 QTLFFSATMAPEIERITNTFLSNPEKIEVERQSTTSATIEQRLIEFKAPRRDAQAKMKRD 248

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   I          ++    K   + + + L + N+    +H ++    R+  +   R
Sbjct: 249 MLRAAITAEGDAFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLDQSHRMRTLAGFR 308

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   +LV  ++   GLDIP    V   D             +  IGR  R   + V + 
Sbjct: 309 DGSITLLVASDVAARGLDIPNVSHVINYDV-----PSHAEDYVHRIGRTGRAGKTGVAIT 363

Query: 690 ADTITKSIQL-AID 702
               +    L AI+
Sbjct: 364 LCVPSDEKYLGAIE 377


>gi|75061727|sp|Q5R7D1|DDX42_PONAB RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|55731230|emb|CAH92329.1| hypothetical protein [Pongo abelii]
          Length = 942

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 433 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 492

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 493 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 606

Query: 696 S 696
           S
Sbjct: 607 S 607


>gi|37522077|ref|NP_925454.1| hypothetical protein gll2508 [Gloeobacter violaceus PCC 7421]
 gi|35213076|dbj|BAC90449.1| gll2508 [Gloeobacter violaceus PCC 7421]
          Length = 437

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+   TK+ A++L E L +   R   +H ++    R  ++   R  + +V+V  ++   
Sbjct: 244 ALIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVVATDVAAR 303

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           GLDI +   V   D  ++G      S I  IGR  R   + V I +A    +     I+ 
Sbjct: 304 GLDIADLSHVINYDMPQDG-----ESYIHRIGRTGRAGRTGVAISFALPTDRYRLRLIER 358


>gi|326478704|gb|EGE02714.1| ATP-dependent RNA helicase DHH1 [Trichophyton equinum CBS 127.97]
          Length = 441

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 62/181 (34%), Gaps = 27/181 (14%)

Query: 518 WNCLRPTTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           ++      ++ SAT P              +E+     + +  I +    V+   ++   
Sbjct: 216 FHPKDRQVMLFSATFPIIVKTFKDKHMRNPYEINLMDELTLRGITQYYAFVEERQKVH-- 273

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
                   + +    Q    I +   +    E L + + E      Y H+ +    R  +
Sbjct: 274 ------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRV 326

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
             D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  + 
Sbjct: 327 FHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGHL 381

Query: 685 K 685
            
Sbjct: 382 G 382


>gi|320157377|ref|YP_004189756.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus MO6-24/O]
 gi|319932689|gb|ADV87553.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus MO6-24/O]
          Length = 408

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 77/212 (36%), Gaps = 21/212 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVEDVYDEINLAAQ 580
           R  T++ SAT    E +  +G   + +  P  +   P    R   TQ     D +     
Sbjct: 180 RKQTMLFSAT---LEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRADSMEHKLA 236

Query: 581 --------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                   Q  R ++ + T+    DL  +L    +   ++  E+    R   I   R G 
Sbjct: 237 LLKDIINNQAERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGS 296

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            +VL+  ++   G+D+P+   V   D  +     S    +  IGR AR       I   +
Sbjct: 297 VNVLLATDVAARGIDLPDVSHVVNFDMPR-----SADVYLHRIGRTARAGKKGNAISIVE 351

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
              + +   +D   R  ++ ++      + PQ
Sbjct: 352 AHDQPM---MDRVARYVKEDIKERFVKELRPQ 380


>gi|283769405|ref|ZP_06342304.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219]
 gi|283104062|gb|EFC05446.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219]
          Length = 425

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 108/312 (34%), Gaps = 47/312 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+            +++  I  +   +  R     + GF      D R +  +
Sbjct: 127 TPGRLLDYL--------AHGKISLRHIEFLVLDEADRM---LDMGFI----ADVRKIVQQ 171

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
             N     T + SAT    E+++    +   I++    V    E +   + ++       
Sbjct: 172 IPNDRI--TALFSAT-MPKEIQE----LARDILKNPKEVRIEAE-KFTASTIDQYLIYTE 223

Query: 577 LAAQQG-----------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
            ++++             + ++   TK  A+ L +YL E+ I    +H +    +R+  +
Sbjct: 224 KSSKKKVLVNLLNTESIKKTIVFTRTKIGADRLEKYLKEKEIACLVIHGDKTQGQRLNAL 283

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +  R  +  +L+  ++   G+DI +   V   D           + +  IGR  R     
Sbjct: 284 QRFRTNQIRILIATDVAARGIDIKDISHVINFD-----LPEDIENYVHRIGRTGRAKQEG 338

Query: 686 V-ILYADTITKSIQLAIDETTRRREKQLEHNKKHNI--NPQSVKEKIMEVIDPILLEDAA 742
           V I        ++   I+        Q +   K N+   P   K+K    I     +   
Sbjct: 339 VSISLVCKEELNLLANIE-----SYIQFQIPLKQNLYSLPLERKKKRKSSIHKTTRKKER 393

Query: 743 TTNISIDAQQLS 754
            +N    +++ S
Sbjct: 394 FSNQKKRSKKKS 405


>gi|262163925|ref|ZP_06031664.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223]
 gi|262027453|gb|EEY46119.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223]
          Length = 416

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 91/257 (35%), Gaps = 35/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L EY        +D        I  +   +  R     + GF  P+   +R     
Sbjct: 132 TPGRLLEY--------IDAERFDCRAIEWLILDEADRM---LDMGFG-PTV--DRLSAEC 177

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL-VDPPVEIRSARTQVEDVYDEI 575
            W   R  T++ SAT    E    +G   + +  P  +  +PP   R   +Q     D++
Sbjct: 178 RW---RKQTLLFSAT---LEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWYHRADDM 231

Query: 576 NLAAQ--------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
               +        Q  R ++ + T+    DL   L +  I   ++  E++   R   I  
Sbjct: 232 PHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMQQDRRNNAITR 291

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV- 686
            R G  ++L+  ++   G+D+P+   V   D       RS    +  IGR  R     + 
Sbjct: 292 FREGSVNILLATDVAARGIDVPDISHVINFD-----LPRSADVYLHRIGRTGRAGKKGIA 346

Query: 687 ILYADTITKSIQLAIDE 703
           I   +   + +   ++ 
Sbjct: 347 ISLVEAHDQPMMARVER 363


>gi|317046374|ref|YP_004114022.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316947991|gb|ADU67466.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 431

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 96/303 (31%), Gaps = 46/303 (15%)

Query: 422 LEQRITYDLEMLET-----TGSCQSIENYSRYLTGRNPGE-----PPPTLFEYIPEDSLL 471
           L  +I  D E L        G     + Y + L     G          L +Y       
Sbjct: 96  LAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLEQGVDILVGTTGRLIDY------- 148

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLR 522
              ++H+ +  I  +   +  R   L   GF         R+P       + F      R
Sbjct: 149 -AKQNHINLGAIQVVVLDEADRMFDL---GFIKDIRWVFRRIPPATQRLSMLFSATLSYR 204

Query: 523 PTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
              +       +  +E   +     +I           ++R  +T +E+         + 
Sbjct: 205 VRELAFEHMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLLEE---------EW 255

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
             R ++   TK   ED+  +L     RV  +  +V   +R+ I+ D   G  D+LV  ++
Sbjct: 256 PDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVATDV 315

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLA 700
              GL IP    V   D         +   +  IGR  R   +   I  A         A
Sbjct: 316 AARGLHIPAVTHVFNYD-----LPDDREDYVHRIGRTGRAGASGHSISLACEEYALNLPA 370

Query: 701 IDE 703
           I+E
Sbjct: 371 IEE 373


>gi|206725493|ref|NP_001126368.1| ATP-dependent RNA helicase DDX42 [Pongo abelii]
          Length = 942

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 433 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 492

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 493 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 606

Query: 696 S 696
           S
Sbjct: 607 S 607


>gi|170593931|ref|XP_001901717.1| DEAD/DEAH box helicase family protein [Brugia malayi]
 gi|158590661|gb|EDP29276.1| DEAD/DEAH box helicase family protein [Brugia malayi]
          Length = 534

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 92/260 (35%), Gaps = 39/260 (15%)

Query: 461 LFEYIPED-------SLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL 513
           L +Y+            L  DE+   + Q+ G Y                LP C +   L
Sbjct: 243 LCDYLQNKILDLRCLHFLVFDEADKLL-QMEGFYHDLIEN---------LLPKCHEIPNL 292

Query: 514 R--------FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565
           R        + +   L+   ++ +AT             +EQ +         VE+   R
Sbjct: 293 RKMLFSATDYNDLAELKGECLMPNATKVVVGTLNSVNPFIEQRV-------LKVEVHEKR 345

Query: 566 TQVEDVYDEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
             + ++  EI L        +I++ V TKR A  +  YL  +  +   +H+ +    R E
Sbjct: 346 DALLNLMQEIYLKRDDNSPPKIIIFVNTKRFASVIACYLSLKGYKAYPIHANLTAKLRRE 405

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            I  L+     +LV  ++   GLDI     +   +  +     S  S +  +GR  R  N
Sbjct: 406 AIEALQSSDCHILVSTDVAARGLDIKGISHIINYEIPR---PESFLSYVHRVGRTGRVGN 462

Query: 684 SK--VILYADTITKSIQLAI 701
                  +A ++   + L +
Sbjct: 463 VGRATTFFAQSVDHGMALEL 482


>gi|255036621|ref|YP_003087242.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254949377|gb|ACT94077.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 385

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 82/231 (35%), Gaps = 34/231 (14%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            +   GF      + R + F      +  +I+ SAT G  E+++     ++  +R     
Sbjct: 164 KMLNMGF----ADEMRDIFFLL--PKKRQSILFSATLGD-EVDKINKDQLKSPVR----- 211

Query: 556 DPPVEIRSARTQVEDVYDEINL--------------AAQQGLRILLTVLTKRMAEDLTEY 601
              +EI      ++ +                     +QQ  ++L+ V   R A++L E 
Sbjct: 212 ---IEIEEEEQNLDLIKQTGYFVDPDRKGPLLRYLIKSQQMKQVLVFVSATRTADNLVEK 268

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L +  I    MHS+     R E +   + GK  VLV  +L   G+DI     V   +   
Sbjct: 269 LKKNGIDAMAMHSKKSQGARTEALNKFKSGKLTVLVATDLASRGIDIQFLPYVINFE--- 325

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
               RS    +  IGR  R  N    +            I +    ++ ++
Sbjct: 326 --LPRSPKDYVHRIGRTGRAENPGEAISLICPEDVHHFKIIQKKMGKKVEM 374


>gi|194227730|ref|XP_001492319.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX53
           (DEAD box protein 53) (DEAD box protein CAGE)
           (Cancer-associated gene protein) (Cancer/testis antigen
           26) (CT26) [Equus caballus]
          Length = 624

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 71/178 (39%), Gaps = 28/178 (15%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT      +  +  + E +I   G +D           V  V  +I +  ++  
Sbjct: 398 QTVMTSATWPHTIRQLARSYLKEPMIVYVGTLDLVA--------VHTVKQDIIVTTEEEK 449

Query: 584 RILL---------------TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           R L+                V  K +A+DL+  L  + + V+ +H   +  +R + + D 
Sbjct: 450 RTLIQEFLRNLAPEDKAIIFVSRKLVADDLSSDLSIQGVPVQSLHGNREQFDREQALDDF 509

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           R G+  +L+  +L   GLD+ +   V   D+ K     +    +  +GR  R   + V
Sbjct: 510 RSGRVKILIATDLAARGLDVRDVTHVYNYDSPK-----NLEEYVHRVGRTGRAGKTGV 562


>gi|92116022|ref|YP_575751.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14]
 gi|91798916|gb|ABE61291.1| DEAD/DEAH box helicase-like protein [Nitrobacter hamburgensis X14]
          Length = 477

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 73/221 (33%), Gaps = 38/221 (17%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           +  T+  SAT     + +    + EQ++R        V +    + V+ +   I      
Sbjct: 186 KRQTLFFSAT-----MPKDIAELAEQMLRDP----ARVAVTPVASTVDRIAQRIIQVDHA 236

Query: 582 G--------------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
                           R L+   TK  A+ + + L +  IR   +H       R  ++  
Sbjct: 237 SKPAFLAQLLKQEPVNRALIFTRTKHGADKVVKSLAKSGIRSDAIHGNKSQNHRERVLAA 296

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            R G+   LV  ++   G+D+     V   D           + +  IGR AR       
Sbjct: 297 FRTGEIRTLVATDIAARGIDVDGISHVVNFD-----LPNVPETYVHRIGRTARAGADGAA 351

Query: 688 L----------YADTITKSIQLAIDETTRRREKQLEHNKKH 718
           +          Y   I K I++A+    RR   Q E    H
Sbjct: 352 ISLVAGAEEMAYLRDIEKLIRVALPREDRRTPGQREAAPAH 392


>gi|321467260|gb|EFX78251.1| hypothetical protein DAPPUDRAFT_213150 [Daphnia pulex]
          Length = 487

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A+   + ++   TKR  + +T  +         +H +    ER  ++ + R GK  +LV 
Sbjct: 304 AEDENKTIIFAETKRKVDSITRAMRRDGWPAMCIHGDKAQPERDWVLNEFRSGKAPILVA 363

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+ +   V   D     +       +  IGR  R+  +       T   S Q
Sbjct: 364 TDVAARGLDVDDVKFVINFD-----YPNCSEDYVHRIGRTGRSQRTGTAYTFFTPNNSKQ 418


>gi|319940808|ref|ZP_08015147.1| DNA/RNA helicase, superfamily II [Sutterella wadsworthensis
           3_1_45B]
 gi|319805690|gb|EFW02471.1| DNA/RNA helicase, superfamily II [Sutterella wadsworthensis
           3_1_45B]
          Length = 601

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   T+   ++LTE L  R   V  +H  +    R  ++R+ R GK D +V  ++   
Sbjct: 248 AIIFARTRNEVDELTEALRVRGYSVEALHGGLDQPTRDRVMRNARSGKIDAIVATDVAAR 307

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           G+D+     V        G   S  + +  IGR  R   +   I   +        A++ 
Sbjct: 308 GIDLENLTHVINF-----GIPASYETYVHRIGRTGRAGRTGTAITILEPREHRHIRALER 362

Query: 704 TTR 706
            TR
Sbjct: 363 ATR 365


>gi|319427540|gb|ADV55614.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 539

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 11/195 (5%)

Query: 521 LRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSAR-TQVEDVYDE 574
            +   ++ SAT      E  +G++   VE  + P       V+  +      Q   +  +
Sbjct: 177 KQRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKSALLTQ 236

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +        ++L+   TK  A  L + L E  I+   +H       R + + D + G+  
Sbjct: 237 LI-KQHDWQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI- 693
           VLV  ++   GLDI +   V   D             I   GRA  +  +  ++ ++ I 
Sbjct: 296 VLVATDIAARGLDIDQLPQVVNFDLP--NVPEDYVHRIGRTGRAGASGQAVSLVSSEEIK 353

Query: 694 -TKSIQLAIDETTRR 707
               I+  I+    R
Sbjct: 354 LLNDIERLINRILDR 368


>gi|284046175|ref|YP_003396515.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283950396|gb|ADB53140.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 460

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 8/138 (5%)

Query: 569 EDVYDEINLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           E   D +    +   R   L+ V TKR A+ L + L  +N+    MH +    +R   + 
Sbjct: 225 EHKLDHLVQELRHHGRGLTLVFVRTKRGADRLVKRLRAQNVESVAMHGDKTQGQRERALS 284

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDA--DKEGFLRSKTSLIQTIGRAARNVNS 684
               G+ DVLV  ++   G+D+     V   DA  D+EG++      I   GRA      
Sbjct: 285 RFERGEVDVLVATDVAARGIDVNGVSHVINFDAPEDREGYVH----RIGRTGRAGATGIG 340

Query: 685 KVILYADTITKSIQLAID 702
              + AD      ++A++
Sbjct: 341 VTFVMADQAKDMGKIAVE 358


>gi|282164729|ref|YP_003357114.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE]
 gi|282157043|dbj|BAI62131.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE]
          Length = 471

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V TKR  ++LT+ L ER      +H ++   +R  ++R  + G  +VLV  ++   
Sbjct: 244 AIVFVRTKRRVDELTKALGERGYPAEGIHGDLAQSKRDSVMRGFKEGTTEVLVATDVAAR 303

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLDI     V  LD       +   S +  IGR  R       I +       +   I++
Sbjct: 304 GLDISGVTHVYNLD-----IPQDPDSYVHRIGRTGRAGKKGTAITFVTPREMGLLRFIEK 358

Query: 704 TTRR 707
            TR 
Sbjct: 359 ITRH 362


>gi|220931392|ref|YP_002508300.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H
           168]
 gi|219992702|gb|ACL69305.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H
           168]
          Length = 527

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 91/265 (34%), Gaps = 32/265 (12%)

Query: 524 TTIVVSATPGSWELEQCQGI--------IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT     L+  +          I  + +   G+     E+R +      V   +
Sbjct: 180 QTLFFSATIPETILDLSKRYQKKSQFIKIAHEKLTVPGIEQYYYEVRRSDKL--KVLTRL 237

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 GL  L+   T++M E+L   L  R      +H      +R  ++   R G  ++
Sbjct: 238 IDLYSPGLS-LIFCNTRKMVEELNIQLQARGYLSDALHGGFNQNQRDRVMDKFRNGIIEI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTIT 694
           LV  ++   G+D+     V   D       +     +  IGR  R   + K   +     
Sbjct: 297 LVATDVAARGIDVNGVEAVFNYDV-----PQDTDYYVHRIGRTGRAGKTGKAFTFVVGKD 351

Query: 695 KSIQLAIDETTRRREKQLE------------HNKKHNIN---PQSVKEKIMEVIDPILLE 739
                 I + T+ R  + +             N  +++     +   +K +++I+ +L +
Sbjct: 352 IYKLRDIQKYTKTRIIKQDIPTLTDIEQAKLENLINDLTDYIDREHLKKYIKIIENLLDD 411

Query: 740 DAATTNISIDAQQLSLSKKKGKAHL 764
           D     I+    +  +  +  +  +
Sbjct: 412 DYTAIEIAAALFKKYMENESSEGEI 436


>gi|254469871|ref|ZP_05083276.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062]
 gi|211961706|gb|EEA96901.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062]
          Length = 476

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 63/191 (32%), Gaps = 16/191 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
            T+  SAT    E+++     ++      +         V  R A  + ED      L  
Sbjct: 179 QTLFFSAT-MPSEIQRLTDTFLQNPAKVEVAKASTTAETVTQRIAAAEPEDYEKRAKLRE 237

Query: 579 ----AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               A+     ++    KR    L   L      V  +H ++    R+ ++ + + G   
Sbjct: 238 LIEGAEDLQNAIVFCNRKRDVATLFRSLVRHEFSVGALHGDMDQRSRMTMLDNFKKGNIK 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           +LV  ++   GLDIP    V   D             +  IGR  R       I      
Sbjct: 298 ILVASDVAARGLDIPSVSHVFNFD-----LPIQAEDYVHRIGRTGRAGRDGTAISIVTGK 352

Query: 694 TKSIQLAIDET 704
            +    AI+ET
Sbjct: 353 DEKALQAINET 363


>gi|119190431|ref|XP_001245822.1| hypothetical protein CIMG_05263 [Coccidioides immitis RS]
 gi|303315109|ref|XP_003067562.1| DEAD/DEAH box helicase domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240107232|gb|EER25417.1| DEAD/DEAH box helicase domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320035669|gb|EFW17610.1| DEAD box helicase [Coccidioides posadasii str. Silveira]
          Length = 646

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 5/127 (3%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            A+     L   +     + LTE      I  RY+ S+     R + +   R  ++ VL+
Sbjct: 285 RAEGRKSTLAFCVDIEHVKCLTEKFRSYGIDARYITSQTPKDIRTQELDAFRNHEYPVLL 344

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              L  EG DIP    V +    +     SK  L+Q IGR  R    K   +   +  ++
Sbjct: 345 NCGLFTEGTDIPNIDCVLLARPTR-----SKNLLVQMIGRGLRLHPGKQDCHIIDMVAAL 399

Query: 698 QLAIDET 704
           Q  I  T
Sbjct: 400 QTGIVTT 406


>gi|67971948|dbj|BAE02316.1| unnamed protein product [Macaca fascicularis]
          Length = 484

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 274 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 327

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 328 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 387

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 388 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 446

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 447 MVDSKHSMNIL----NR---IQEHFNKK 467


>gi|77359594|ref|YP_339169.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76874505|emb|CAI85726.1| putative ATP-dependent RNA helicase(rhlE-like) ; DEAD-box protein
           family [Pseudoalteromonas haloplanktis TAC125]
          Length = 432

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 76/185 (41%), Gaps = 24/185 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR-SARTQVEDVYDEINLAAQQG 582
            T++ SAT      +     + +++++   LV   V+ R SA  +VE V   ++   ++ 
Sbjct: 200 QTLLFSAT-----FDDSVFALSKKLLKNPELV--EVDKRNSAAVEVEQVIYSVDEDRKRE 252

Query: 583 L-----------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
           L           ++L+   TK+MA+ L + + +  ++   +H +     R   +++ + G
Sbjct: 253 LVSHMIGMKNWRQVLIFTRTKQMADQLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEG 312

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
              VLV  ++   GLDIP    V   +             +  IGR  R     + +   
Sbjct: 313 ITRVLVATDVAARGLDIPTLRFVINFE-----LPYIAEDYVHRIGRTGRAGEQGLAMSLV 367

Query: 692 TITKS 696
           +I + 
Sbjct: 368 SIDEQ 372


>gi|329938804|ref|ZP_08288200.1| ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329302295|gb|EGG46187.1| ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 673

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 84/237 (35%), Gaps = 23/237 (9%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +D        A +  R ++ V T+  A+ + E L +   +   +H  +    R   + D 
Sbjct: 258 KDKAPVTAAIASRKGRTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADF 317

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G  +VLV  ++   G+ +    LV  +D             +   GR AR   +  ++
Sbjct: 318 KDGYVNVLVATDVAARGIHVDGIDLVLNVDP-----AGDHKDYLHRAGRTARAGRTGTVV 372

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE-DAATTNIS 747
                 +           RR+      +   ++      +     DP + E   A +   
Sbjct: 373 SLSLPHQ-----------RRQIFRLM-EDAGVDASRHVIQSAGAFDPEVAEITGARSMTE 420

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
           + A+    + ++ +  +  L KQ+  A        A  +R+E  RL +    +  +D
Sbjct: 421 VQAESAGNAAQQAEREVAYLTKQLERATR-----RAGELREEADRLVARAARERGED 472


>gi|321468350|gb|EFX79335.1| hypothetical protein DAPPUDRAFT_244975 [Daphnia pulex]
          Length = 450

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 77/226 (34%), Gaps = 35/226 (15%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
            +   +   ++ SAT                +E+   + + ++ + +    V    ++  
Sbjct: 232 SFLPAKRQILLYSATFPVTVEEFMRKHIDNPYEINLMEELTLKGVTQYYAFVQERQKVH- 290

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   + +  E L + + E      Y+H+ ++   R  
Sbjct: 291 -------CLNTLFSKLQINQSI-IFCNSTQRVELLAKKITELGYSCYYIHARMQQAHRNR 342

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +L   G+DI    +V   D     F +   + +  IGR+ R  +
Sbjct: 343 VFHDFRNGLCRNLVCSDLFTRGIDIQAVNVVINFD-----FPKMAETYLHRIGRSGRFGH 397

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             + +   T     + A+         +++        P+ + + +
Sbjct: 398 LGIAINLITYED--RFALHRIESELSTEIK------PIPKVIDKSL 435


>gi|297284433|ref|XP_002802593.1| PREDICTED: ATP-dependent RNA helicase DDX19B [Macaca mulatta]
          Length = 453

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 243 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 296

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 297 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 356

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 357 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 415

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 416 MVDSKHSMNIL----NR---IQEHFNKK 436


>gi|226312984|ref|YP_002772878.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226095932|dbj|BAH44374.1| probable ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 529

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 80/209 (38%), Gaps = 41/209 (19%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            +P TI VS        E+    ++EQ+           ++   R +VE +   ++   +
Sbjct: 197 KQPQTIAVSR-------EEVTAPLIEQVY---------YKVFD-RNKVESLCRILDS--E 237

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
                ++   TKR  ++L+E L  R      +H ++   +R +++   R G  + L+  +
Sbjct: 238 DVELGIIFCRTKRGVDELSEVLQSRGYLADGLHGDLSQAQRDKVMNAFREGSIEFLIATD 297

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL- 699
           +   G+D+     V   D       +   S +  IGR  R     + +   T  +  Q+ 
Sbjct: 298 VAARGIDVGNVSHVINYD-----IPQDSESYVHRIGRTGRAGRKGIAMTLVTPREVRQMM 352

Query: 700 ----------------AIDETTRRREKQL 712
                           +++E   R+++QL
Sbjct: 353 FIQKQTKAQVLSRNVPSLEEVAERKQEQL 381


>gi|148700135|gb|EDL32082.1| mCG141508, isoform CRA_a [Mus musculus]
          Length = 624

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 39/256 (15%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 252 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 311

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 312 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 370

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 371 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICVCFYQ 425

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 426 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 472

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 473 AVDFFRPSAQRLIEEK 488


>gi|145352838|ref|XP_001420742.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580977|gb|ABO99035.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 413

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 68/194 (35%), Gaps = 32/194 (16%)

Query: 524 TTIVVSAT---------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
            T+  +AT               P    +     ++  + I  T      +E+ S   + 
Sbjct: 182 QTLFFTATWPKAVIRVATAILTNPIQVNIGDTDQLVANKDITQT------IEVCSGFEKE 235

Query: 569 EDVYDEINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + + +N   +    L+ L+   TKRM + L             +H + +  ER  I+ 
Sbjct: 236 KRLMEILNNPPEGCDPLKALVFCSTKRMCDQLG---RSVGNLAGIIHGDKEQRERDWILN 292

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-K 685
             R G+  VLV  ++   GLD+ +C LV   D     F       +  IGR  R      
Sbjct: 293 QFRQGRTPVLVATDVAARGLDVKDCNLVINYD-----FPNQIEDYVHRIGRTGRAGKKGW 347

Query: 686 VILYADTITKSIQL 699
              + D    ++  
Sbjct: 348 AFSFIDGGEGNMAR 361


>gi|118443840|ref|YP_877556.1| ATP-dependent RNA helicase [Clostridium novyi NT]
 gi|118134296|gb|ABK61340.1| ATP-dependent RNA helicase [Clostridium novyi NT]
          Length = 476

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 65/185 (35%), Gaps = 21/185 (11%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TK    ++   +  +    + +H  +   +R+  I D + GKF  LV  ++   
Sbjct: 242 AIIFCNTKVEVGNVANKMKNQGFNAKALHGGMDQKDRLYTINDFKRGKFQFLVATDVAAR 301

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE 703
           G+D+ E   V   +   E     K S +  IGR  R  +  K I +     K +   I+E
Sbjct: 302 GIDVEEITHVINYEVPVE-----KESYVHRIGRTGRAGHKGKSITFVSDYEKRMFNEIEE 356

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
                   + ++      P+   +++ +  +    +           +   +   +    
Sbjct: 357 Y-------IGYS-----VPE---KEMPQEEEIEKGKKLFEEKARQRPKFKKVKGHEIDKK 401

Query: 764 LKSLR 768
           +  + 
Sbjct: 402 ITKIH 406


>gi|3775991|emb|CAA09198.1| RNA helicase [Arabidopsis thaliana]
          Length = 145

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  D R G    LV  +L   G
Sbjct: 12  IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRG 71

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +DI    +V   D     F R+  S +  +GR+ R  +  + +   T     ++
Sbjct: 72  IDIQAVNVVINFD-----FPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKM 120


>gi|68249023|ref|YP_248135.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 86-028NP]
 gi|68057222|gb|AAX87475.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 86-028NP]
          Length = 439

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 88/260 (33%), Gaps = 34/260 (13%)

Query: 470 LLFVDESHVTIPQISGMYRG-----DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +L  DE+   +    G            RK TL      L S      L  +    L   
Sbjct: 153 MLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL------LFSATLEGELLVDFAERLLND 206

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + V A P   E ++                       S   +++ +   I    ++  R
Sbjct: 207 PVKVDAEPSRRERKKINQWYYHAD--------------SNEHKIKLLARFIE--TEKVTR 250

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V  +  A +++E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++   
Sbjct: 251 GIVFVRRREDAREVSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+DI +   V   D        S  + +  IGR AR       +            + + 
Sbjct: 311 GIDIDDVSHVMNFD-----LPYSADTYLHRIGRTARAGKKGTAVSFVEAHD--YKLLGKI 363

Query: 705 TRRREKQLEHNKKHNINPQS 724
            R  E+ L+      + P++
Sbjct: 364 KRYTEEILKARILAGLEPRT 383


>gi|121728399|ref|ZP_01681427.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52]
 gi|147674594|ref|YP_001216154.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|153215838|ref|ZP_01950170.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587]
 gi|153802013|ref|ZP_01956599.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3]
 gi|153829171|ref|ZP_01981838.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39]
 gi|229512921|ref|ZP_04402388.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21]
 gi|229525313|ref|ZP_04414718.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis
           VL426]
 gi|229530466|ref|ZP_04419854.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)]
 gi|254226532|ref|ZP_04920115.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51]
 gi|254291900|ref|ZP_04962682.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226]
 gi|262169959|ref|ZP_06037649.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27]
 gi|262191213|ref|ZP_06049412.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93]
 gi|297580786|ref|ZP_06942712.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385]
 gi|121629333|gb|EAX61765.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52]
 gi|124114555|gb|EAY33375.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587]
 gi|124122472|gb|EAY41215.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3]
 gi|125620936|gb|EAZ49287.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51]
 gi|146316477|gb|ABQ21016.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|148875360|gb|EDL73495.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39]
 gi|150422186|gb|EDN14151.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226]
 gi|227012485|gb|ACP08695.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|229332239|gb|EEN97727.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)]
 gi|229338894|gb|EEO03911.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis
           VL426]
 gi|229350170|gb|EEO15123.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21]
 gi|259156570|gb|ACV96513.1| ATP-dependent RNA helicase SrmB [Vibrio fluvialis Ind1]
 gi|262021693|gb|EEY40404.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27]
 gi|262032915|gb|EEY51454.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93]
 gi|297535202|gb|EFH74037.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385]
 gi|327483459|gb|AEA77866.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae LMA3894-4]
          Length = 423

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 89/257 (34%), Gaps = 35/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L EY        +D        I  +   +  R     + GF  P+   +R     
Sbjct: 132 TPGRLLEY--------IDAERFDCRAIEWLILDEADRM---LDMGFG-PTV--DRLSTEC 177

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEI 575
            W   R  T++ SAT    E    +G   + +  P     +PP   R   +Q     D++
Sbjct: 178 RW---RKQTLLFSAT---LEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDM 231

Query: 576 NLAAQ--------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
               +        Q  R ++ + T+    DL   L +  I   ++  E+    R   I  
Sbjct: 232 PHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISR 291

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV- 686
            R G  ++L+  ++   G+D+P+   V   D       RS    +  IGR  R     + 
Sbjct: 292 FREGDVNILLATDVAARGIDVPDISHVINFD-----LPRSADVYLHRIGRTGRAGKKGIA 346

Query: 687 ILYADTITKSIQLAIDE 703
           I   +   + +   ++ 
Sbjct: 347 ISLVEAHDQPMMARVER 363


>gi|15640680|ref|NP_230309.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121587852|ref|ZP_01677609.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80]
 gi|153818685|ref|ZP_01971352.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457]
 gi|153822294|ref|ZP_01974961.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|227080841|ref|YP_002809392.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2]
 gi|229505718|ref|ZP_04395228.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286]
 gi|229508708|ref|ZP_04398201.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|229519543|ref|ZP_04408986.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9]
 gi|229608737|ref|YP_002879385.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236]
 gi|254850991|ref|ZP_05240341.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10]
 gi|255743880|ref|ZP_05417836.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101]
 gi|262156099|ref|ZP_06029218.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1]
 gi|298500776|ref|ZP_07010579.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757]
 gi|9655098|gb|AAF93826.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547888|gb|EAX57972.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80]
 gi|126510765|gb|EAZ73359.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457]
 gi|126520190|gb|EAZ77413.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|227008729|gb|ACP04941.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2]
 gi|229344232|gb|EEO09207.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9]
 gi|229354232|gb|EEO19162.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|229357941|gb|EEO22858.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286]
 gi|229371392|gb|ACQ61815.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236]
 gi|254846696|gb|EET25110.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10]
 gi|255738511|gb|EET93900.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101]
 gi|262030135|gb|EEY48780.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1]
 gi|297540557|gb|EFH76615.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757]
          Length = 423

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 89/257 (34%), Gaps = 35/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L EY        +D        I  +   +  R     + GF  P+   +R     
Sbjct: 132 TPGRLLEY--------IDAERFDCRAIEWLILDEADRM---LDMGFG-PTV--DRLSTEC 177

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEI 575
            W   R  T++ SAT    E    +G   + +  P     +PP   R   +Q     D++
Sbjct: 178 RW---RKQTLLFSAT---LEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDM 231

Query: 576 NLAAQ--------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
               +        Q  R ++ + T+    DL   L +  I   ++  E+    R   I  
Sbjct: 232 PHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISR 291

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV- 686
            R G  ++L+  ++   G+D+P+   V   D       RS    +  IGR  R     + 
Sbjct: 292 FREGDVNILLATDVAARGIDVPDISHVINFD-----LPRSADVYLHRIGRTGRAGKKGIA 346

Query: 687 ILYADTITKSIQLAIDE 703
           I   +   + +   ++ 
Sbjct: 347 ISLVEAHDQPMMARVER 363


>gi|330038909|ref|XP_003239737.1| eukaryotic initiation factor 4a [Cryptomonas paramecium]
 gi|327206662|gb|AEA38839.1| eukaryotic initiation factor 4a [Cryptomonas paramecium]
          Length = 390

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 13/130 (10%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V +K+ AE L E +      V  +H  +   +R  I+++ RLG   VL+  +LL  G
Sbjct: 260 IVYVNSKKKAEWLAEKMSSNGFEVLCLHGSITQADRSAIMKNFRLGIRRVLITTDLLSRG 319

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +D+ +  LV   D        SK   I  IGR+ R     + +      +   L      
Sbjct: 320 IDVQQVCLVINYD-----LPTSKEIYIHRIGRSGRFGKKGIAVNLLVKNEVFVL------ 368

Query: 706 RRREKQLEHN 715
             RE +  +N
Sbjct: 369 --REIESYYN 376


>gi|298708658|emb|CBJ26145.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 275

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 65/193 (33%), Gaps = 27/193 (13%)

Query: 520 CLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
             +    + SAT                +E+     + ++ I +    V    ++     
Sbjct: 72  SRKRQICLFSATFPVTVKDFKDRHISNPYEINLMDELTLKGITQFYAFVAERQKVH---- 127

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
                 + +    +    I +   +    E L + + E      Y+H++++   R  +  
Sbjct: 128 ----CLNTLFSKLEVNQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFH 182

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + R G    LV  +L   G+DI    +V   D     F ++  + +  IGR+ R  +  +
Sbjct: 183 EFRNGATRHLVSSDLFTRGIDIQSVNVVINFD-----FPKNAETYLHRIGRSGRFGHLGL 237

Query: 687 ILYADTITKSIQL 699
            +   T      L
Sbjct: 238 AINLITYEDRHNL 250


>gi|289740539|gb|ADD19017.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 460

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 98/292 (33%), Gaps = 55/292 (18%)

Query: 490 DFHRKATLA--EYGFRL----PSCMDNRPLRFEEWNCLRPTTIVVSAT-PG--------- 533
           D      L   E    L       +D+  L+        P  ++ SAT P          
Sbjct: 199 DMSHCKILVLDEADKLLSLDFQGMLDHVILKLP----KDPQILLFSATFPLTVKNFMEKH 254

Query: 534 ---SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
               +E+   + + ++ + +    V    ++           + +    Q    I +   
Sbjct: 255 LREPYEINLMEELTLKGVTQYYAFVQERQKVH--------CLNTLFSKLQINQSI-IFCN 305

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           + +  E L + + E      Y+H+++    R  +  D R G    LV  +L   G+D+  
Sbjct: 306 STQRVELLAKKITELGYCCYYIHAKMAQGHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQA 365

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
             +V   D     F R   + +  IGR+ R  +  + +   T      L       R EK
Sbjct: 366 VNVVINFD-----FPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDL------HRIEK 414

Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPILLED--AATTNISIDAQQLSLSKKKG 760
           +L           +  + I +VIDP L     A  +  S      + S ++G
Sbjct: 415 ELG----------TEIKPIPKVIDPALYVANVAVNSGESSGNDFNNSSNEEG 456


>gi|161528690|ref|YP_001582516.1| DEAD/DEAH box helicase domain-containing protein [Nitrosopumilus
           maritimus SCM1]
 gi|160339991|gb|ABX13078.1| DEAD/DEAH box helicase domain protein [Nitrosopumilus maritimus
           SCM1]
          Length = 440

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 105/280 (37%), Gaps = 30/280 (10%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++   S+   D +H+ + +   M          + + GF L    ++R +   
Sbjct: 126 TPGRLIDHLKRGSIELRDVTHIVLDEADTMLD-----MGFIDDIGFILDLAPEDRVM--S 178

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            ++   PT I+         L   +  +++        +D    +   R + + + D I 
Sbjct: 179 LFSATMPTEILR---LSEEYLNNPKQFLLDADDLSGEGIDQSYLVIKDRDKFKYLIDFIK 235

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TK    D+ ++L++       +  ++    R + +   R GK D+L
Sbjct: 236 PTKGQ---AIVFCSTKYRTRDVAKFLHQEKFDAVAIEGDMSQHRREQSMGKFRSGKADIL 292

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITK 695
           V  ++   G+D+P   LV   D         + +    IGR AR     K + +      
Sbjct: 293 VATDVASRGIDVPRVELVINYDV-----PNQEMAYFHRIGRTARAGAKGKAVTFV----- 342

Query: 696 SIQLAIDETTRRREKQL---EHNKKHNI---NPQSVKEKI 729
           S     D    +R+ ++   + N++  I    P  +K ++
Sbjct: 343 SYSSVGDWNLIKRQIKVPIKDLNEEMGIEIAIPDPLKRQM 382


>gi|94497443|ref|ZP_01304013.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
 gi|94423074|gb|EAT08105.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
          Length = 443

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 83/252 (32%), Gaps = 22/252 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE----QIIRP----TGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      +     +      ++ RP    T +    V++  AR + E +   +
Sbjct: 179 QTLLFSATMPPVIKKLADRFLSNPKSIEVARPATASTNIAQHLVKV-DARKKREALRALL 237

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           +   QQ    ++    K    +L + L     +   +H ++    RI  +   R G  ++
Sbjct: 238 D--GQQVQSAVIFCNRKTTVRELNKSLQRDGYKSGEIHGDIDQASRIAELERFRDGTVNI 295

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI     V   DA            +  IGR  R     V     T   
Sbjct: 296 LVASDVAARGLDIKGVSHVFNFDA-----PWHPDDYVHRIGRTGRAGAKGVAYTFVTKDD 350

Query: 696 SIQLAIDETTRRREKQLEHNKKHNIN----PQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
           +   AID   +    ++++           P++  +            D    +   + +
Sbjct: 351 A--EAIDNIQKLIGTKIDYADFAGETTDAEPKAEGKPAPTRTRRAERLDEQRKDQRREER 408

Query: 752 QLSLSKKKGKAH 763
           +   S  +    
Sbjct: 409 KAPASGPRQSKM 420


>gi|330957006|gb|EGH57266.1| helicase [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 630

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +        R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLPANHKRSLLAHLITVGAWEQVLIFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  TR++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTRQK 371


>gi|325684686|gb|EGD26840.1| cold-shock DEAD box protein A [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 478

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 79/193 (40%), Gaps = 14/193 (7%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI--IRPTGLVDPPVE---IRSARTQVEDVYDEI 575
           R  T++ SAT P   ++   + +   Q+  I+   L    ++   +R    +  D    +
Sbjct: 176 RDQTLLFSATMPKPIQVLGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRL 235

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                  L  ++   TKR  ++LT  L  R      +H ++    R+++++  + G+ D+
Sbjct: 236 IDVENPDL-AVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDI 294

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI     V   D       +   S +  IGRA ++     + +      
Sbjct: 295 LVATDVAARGLDISGVTHVYNYD-----IPQDPDSYVHRIGRAGKSG--MSVTFVTPNEI 347

Query: 696 SIQLAIDETTRRR 708
                I++ T+++
Sbjct: 348 GYMRTIEDLTKKK 360


>gi|224080444|ref|XP_002190335.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 [Taeniopygia
           guttata]
          Length = 503

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 75/209 (35%), Gaps = 30/209 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 293 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNRDEK-F 345

Query: 584 RIL-------------LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           R L             +   T++ A  L   L     +V  +  E+   +R  +I   R 
Sbjct: 346 RALCNIYGAITIAQAMIFCHTRKTAGWLAAELSREGHQVALLSGEMMVEQRAAVIERFRE 405

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GK  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + +
Sbjct: 406 GKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAI 464

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKK 717
                  S+ +      R    Q   NKK
Sbjct: 465 NMVDSKHSMNIL----NR---IQEHFNKK 486


>gi|222054856|ref|YP_002537218.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221564145|gb|ACM20117.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 456

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 92/255 (36%), Gaps = 30/255 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPL--R 514
            P  L +Y+ +           ++  I  +   +  R     + GF      D R +  R
Sbjct: 131 TPGRLIDYLKQKVY--------SLKNIEALVIDEADRMF---DMGFI----ADLRFILRR 175

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGI--IVEQI-IRPTGLVDPPVEIRSARTQVEDV 571
              ++      ++ SAT     +E       + E++ + P  +    VE        ++ 
Sbjct: 176 LPPFDAR--QNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVLYHVARKEK 233

Query: 572 YDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           +  +    ++    R ++ V TKR AE L + L       R +  +V+  +R+ I+ D +
Sbjct: 234 FPLLLGLLRKKGMDRTMIFVNTKREAEYLYDRLNANEFPARVISGDVEQRKRMRILEDFK 293

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVIL 688
            GK  +++  ++   GL I     V   D       +     +  IGR AR     K I 
Sbjct: 294 NGKLPIMIATDVASRGLHIDGVSHVINYD-----LPQDAEDYVHRIGRTARAGAEGKAIS 348

Query: 689 YADTITKSIQLAIDE 703
            AD         I E
Sbjct: 349 LADEDGAFHIEDIHE 363


>gi|23308803|ref|NP_599999.2| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389660|ref|YP_225062.1| ATP-dependent RNA helicase protein [Corynebacterium glutamicum ATCC
           13032]
 gi|21323537|dbj|BAB98164.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
 gi|41324995|emb|CAF19476.1| PROBABLE ATP-DEPENDENT RNA HELICASE PROTEIN [Corynebacterium
           glutamicum ATCC 13032]
          Length = 424

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 6/130 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +  +I  +  +G + ++   TKR A  + E L  R   V  +H ++    R + +   
Sbjct: 242 EAITAKILQSKDRG-KTIIFARTKRTAAQVAEDLASRGFSVGSVHGDMGQPAREKSLNAF 300

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R GK D+LV  ++   G+D+ +   V               + +  IGR  R  ++   +
Sbjct: 301 RTGKIDILVATDVAARGIDVDDVTHVINYQT-----PDDPMTYVHRIGRTGRAGHNGTAV 355

Query: 689 YADTITKSIQ 698
                 ++++
Sbjct: 356 TLVGYDETLK 365


>gi|226940616|ref|YP_002795690.1| ATP-dependent RNA helicase protein [Laribacter hongkongensis HLHK9]
 gi|226715543|gb|ACO74681.1| Putative ATP-dependent RNA helicase protein [Laribacter
           hongkongensis HLHK9]
          Length = 520

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 72/209 (34%), Gaps = 17/209 (8%)

Query: 490 DFHRKATLA--EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT------PGSWEL--EQ 539
           DF R   L   E    L        +           T   +AT        + EL  E 
Sbjct: 148 DFSRLEMLVLDEADRMLDMGFSEDVMEIASQLPKARQTAFFTATMTRRVLDFADELLTEP 207

Query: 540 CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
            +  I  Q  +   +    + +     +   V   ++    +  + ++ V TKR  + L 
Sbjct: 208 AKIEIAAQTAKHENIEQQAIFVDDIDHKRRLVRHILSQPDVK--QAIVFVATKRDCDTLA 265

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
           + L    IR   +H +++  +R   +  LR G+ +VLV  ++   G+D+     V   D 
Sbjct: 266 DELIVDGIRADALHGDMQQRDRTRTLTRLRSGQTEVLVATDVAARGIDVAGISHVINFDL 325

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            +          +  +GR  R   +   +
Sbjct: 326 PRF-----AEDYVHRVGRTGRAGATGTAV 349


>gi|261364093|ref|ZP_05976976.1| ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996]
 gi|288567659|gb|EFC89219.1| ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996]
          Length = 471

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 72/194 (37%), Gaps = 21/194 (10%)

Query: 521 LRPTTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSA-------RTQVED 570
            +  T++ SAT  P   +L +      E + +         VE           R  +E 
Sbjct: 182 KQRQTLLFSATFAPPIRKLAKDFMNAPEIVEVAAQNTTSANVEQHIIAVDALKKRNLLER 241

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++ +      ++++   TK+  + +T  L  RN+  + +H +     R+E +   + 
Sbjct: 242 LIVDLQM-----NQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKE 296

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VLV  ++   GLDI E   V   +             +  IGR  R     V I  
Sbjct: 297 GSLRVLVATDVAARGLDIAELPFVINYE-----LPTQPEDYVHRIGRTGRAGADGVAISL 351

Query: 690 ADTITKSIQLAIDE 703
            D   + +  AI E
Sbjct: 352 MDKTEQKMFEAIKE 365


>gi|163843207|ref|YP_001627611.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
 gi|163673930|gb|ABY38041.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
          Length = 482

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 16/191 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVED------VYD 573
            T+  SAT    E+ +     +   +R            V  R  ++  +D      + D
Sbjct: 180 QTLFFSAT-MPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRD 238

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I          ++    K+   +L   L         +H ++    R+ ++   + GK 
Sbjct: 239 LIQSEGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKL 298

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIP+   V   D             +  IGR  R   S       T 
Sbjct: 299 RLLVASDVAARGLDIPDVSHVFNFDVPI-----HAEDYVHRIGRTGRAGRSGKAFTIVTS 353

Query: 694 TKSIQLAIDET 704
           + +  LA  E+
Sbjct: 354 SDTKYLAAIES 364


>gi|149699345|ref|XP_001501014.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19B isoform 1
           [Equus caballus]
          Length = 479

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 269 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNRDEKFQ 322

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 323 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 382

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 383 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 441

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 442 MVDSKHSMNIL----NR---IQEHFNKK 462


>gi|148559195|ref|YP_001258911.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
 gi|148370452|gb|ABQ60431.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
           ATCC 25840]
          Length = 482

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 16/191 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVED------VYD 573
            T+  SAT    E+ +     +   +R            V  R  ++  +D      + D
Sbjct: 180 QTLFFSAT-MPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRD 238

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I          ++    K+   +L   L         +H ++    R+ ++   + GK 
Sbjct: 239 LIQSEGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKL 298

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIP+   V   D             +  IGR  R   S       T 
Sbjct: 299 RLLVASDVAARGLDIPDVSHVFNFDVPI-----HAEDYVHRIGRTGRAGRSGKAFTIVTS 353

Query: 694 TKSIQLAIDET 704
           + +  LA  E+
Sbjct: 354 SDTKYLAAIES 364


>gi|146312704|ref|YP_001177778.1| ATP-dependent RNA helicase SrmB [Enterobacter sp. 638]
 gi|145319580|gb|ABP61727.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638]
          Length = 442

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 66/188 (35%), Gaps = 26/188 (13%)

Query: 528 VSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILL 587
           VSATP + E ++          R          ++    Q +              R ++
Sbjct: 210 VSATPSTRERKKIHQW----YYRADNFEHKLELLKHLLKQDDTT------------RTIV 253

Query: 588 TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLD 647
            V  +    +L   L    I   Y+  ++  ++R E I+ L  G+ +VLV  ++   G+D
Sbjct: 254 FVRKRERVHELAAQLRSAGIDNCYLEGDMPQVKRTEGIKRLTEGRVNVLVATDVAARGID 313

Query: 648 IPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-----ID 702
           IPE   V   D  + G      + +  IGR  R       +        + L      I+
Sbjct: 314 IPEVSHVINFDMPRSG-----DTYLHRIGRTGRAGLKGTAISLVEAHDYLLLQKVGRYIE 368

Query: 703 ETTRRREK 710
           E  + R  
Sbjct: 369 EPVKARVI 376


>gi|118589105|ref|ZP_01546512.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Stappia aggregata IAM 12614]
 gi|118438434|gb|EAV45068.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Stappia aggregata IAM 12614]
          Length = 505

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 65/205 (31%), Gaps = 40/205 (19%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T+  SAT    E+++     ++   R        +E+    +  E+V   +     +  
Sbjct: 203 QTLFFSAT-MPPEIQRLTETFLQNPAR--------IEVAPTSSTAENVAQFLKATDSKDY 253

Query: 584 -----------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
                              ++    KR    +   L      V  +H ++    R+ ++ 
Sbjct: 254 EKRAALRDLLEGAEDLQNAIVFCNRKRDVTTVYRSLERHEYNVGALHGDMDQRTRMMMLD 313

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + R G   +LV  ++   GLDIPE   V   D        +    +  IGR  R      
Sbjct: 314 NFRKGTIKLLVASDVAARGLDIPEVSHVFNFDV-----PSNAEDYVHRIGRTGRAGRKGT 368

Query: 687 IL---------YADTITKSIQLAID 702
                      Y D I   I+  ID
Sbjct: 369 AFTLVTGEDQKYLDAIQTLIKKDID 393


>gi|34495357|gb|AAQ73499.1| zinc responsive protein ZD10B [Rattus norvegicus]
          Length = 482

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 272 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNREEKFQ 325

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 326 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 385

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 386 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 444

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 445 MVDSKHSMNIL----NR---IQEHFNKK 465


>gi|303238460|ref|ZP_07324994.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593858|gb|EFL63572.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 481

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 99/244 (40%), Gaps = 25/244 (10%)

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
             P   E+E+ +   +++I++    VD           + D+        +     ++  
Sbjct: 200 KNPVYAEIEE-ENKAIDRIVQERYEVDE----NDKLNLLRDI-----TTLENPDSCIIFC 249

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            TK   ++L + L + N     +H  ++  +R+ ++ D + G F  LV  ++   G+DI 
Sbjct: 250 STKIKTDELFDELAKLNYTCEKIHGGMEQSDRLRVMNDFKQGYFRYLVATDVAARGIDID 309

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           +  LV   D       + K S +  IGR  R   +   +   T  +S    +D+  +   
Sbjct: 310 DISLVINYD-----IPQDKESYVHRIGRTGRVDRNGKAITFVTPDES--KYLDDIHKYIG 362

Query: 710 KQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRK 769
           K++E   K   + ++VK+K  E I+ +              +   LS+   K H+ + +K
Sbjct: 363 KEIE--LKERPDKEAVKDKEQEFIEKMNGAPEIKQR-----KGEQLSRDIIKLHINAGKK 415

Query: 770 -QMH 772
            +M 
Sbjct: 416 TKMR 419


>gi|317051368|ref|YP_004112484.1| DEAD/DEAH box helicase domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316946452|gb|ADU65928.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
           S5]
          Length = 488

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)

Query: 541 QGIIVEQIIRPTGLVDPPV-EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLT 599
           + ++ EQ  + T L D    E+R A  + E +   I++        ++   TK  A+++T
Sbjct: 208 EHVVAEQTQKTTSLTDQIYYEVREAD-KFEALCRVIDITPD--FYGVVFCRTKVDADEIT 264

Query: 600 EYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDA 659
             L  R      +H +V   +R +I+   R  + ++LV  ++   G+D+     V     
Sbjct: 265 RRLQHRKYVTEALHGDVSQNQREKILDAFRRKRLNILVATDVAARGIDVQNLTHVINFS- 323

Query: 660 DKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA----IDETTRRREKQLEHN 715
                 +S  S +  +GR  R       +   +  +  +LA    I +TT RR++  + N
Sbjct: 324 ----LPQSPESYVHRVGRTGRAGKEGTAITFISPAEFRKLAFIQKITQTTIRRQELPDVN 379

Query: 716 KKHNINPQSVKEKIMEVIDP 735
               +  +S+   +  +I+ 
Sbjct: 380 TVIKLKKESIAGALENLIES 399


>gi|225873935|ref|YP_002755394.1| ATP-dependent RNA helicase [Acidobacterium capsulatum ATCC 51196]
 gi|225793658|gb|ACO33748.1| ATP-dependent RNA helicase [Acidobacterium capsulatum ATCC 51196]
          Length = 430

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 66/195 (33%), Gaps = 9/195 (4%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-LVDPPVEIRSARTQVE-DVYDEINLA 578
            +  T+  SAT           I+   +    G        +R    +V+ D    +   
Sbjct: 174 RQRQTMCFSATIDPAVAHLLDEILTNPVRLSFGSTQQTSSSVRLIAYEVDADQKAALVHR 233

Query: 579 A--QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               +  + L+ V TKR  E + + L    I V  +H +    +R   + D + G+  VL
Sbjct: 234 VVTAEEGQSLVFVGTKRRTEHVAKRLDRAGISVAVLHGDRSQSQRNRALEDFQRGRARVL 293

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+ +     V   D  K          I   GR  R   + V     T  + 
Sbjct: 294 VATDVASRGIHVDNIAQVINYDMPKM-----TEDFIHRAGRTGRAGATGVAATFYTPLER 348

Query: 697 IQLAIDETTRRREKQ 711
            +    E T  R+ +
Sbjct: 349 REFNRFEKTLNRKIE 363


>gi|293333116|ref|NP_001169206.1| hypothetical protein LOC100383059 [Zea mays]
 gi|223975507|gb|ACN31941.1| unknown [Zea mays]
          Length = 364

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L + L   +IRV  +H+++   +R + + +LR GK  VL+   ++  
Sbjct: 212 VLIFVQSKERAKELYKELAFDDIRVDVIHADLSEQQRQDAVDNLRAGKTWVLIATEVIAR 271

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
           G+D      V   D     F  S  + I  IGR+ R   S   I +     K     I
Sbjct: 272 GMDFKGVASVINYD-----FPESAAAYIHRIGRSGRAGRSGEAITFFTEEDKPFLRNI 324


>gi|221198351|ref|ZP_03571397.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
 gi|221208290|ref|ZP_03581294.1| dead/deah box helicase [Burkholderia multivorans CGD2]
 gi|221171938|gb|EEE04381.1| dead/deah box helicase [Burkholderia multivorans CGD2]
 gi|221182283|gb|EEE14684.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
          Length = 506

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I ++Q +     +   V     R   + + D + 
Sbjct: 232 QTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIAQTVHYVDDRDHKDRLLDHLL 291

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             A      ++   TK  A+ L   L +   +   +H ++    R   IR LR  +  VL
Sbjct: 292 RDAALDQ-AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVL 350

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S + +    +  +
Sbjct: 351 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGIAVSL--VHHA 403

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 404 EQGALKRIER 413


>gi|242014354|ref|XP_002427856.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212512325|gb|EEB15118.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 384

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 71/184 (38%), Gaps = 14/184 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR--------TQVEDVYDE 574
              + SAT P +        I  E+II+ +      ++    +         + E +   
Sbjct: 172 QLYLTSATMPRNLNDTLANIITPEEIIKISTNYLHKIQSHIPQEFKRVGKGNKPEALLKI 231

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I   A+  +  ++        + +  +L E NI+ R +H+++   +R+++ +D + G ++
Sbjct: 232 IKKNAKLNIPTMIFCNKTSTVKWVNIFLNENNIQSREIHADMNHEKRLQLYQDFKEGLYN 291

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           ++   ++   GLD      V   D  K          I   GR  R  + +     + I+
Sbjct: 292 IICCTDIASRGLDCTHVKHVINYDFPKF-----IADYIHRCGRTGRIGHDQGCCITNFIS 346

Query: 695 KSIQ 698
            + +
Sbjct: 347 LASE 350


>gi|209693767|ref|YP_002261695.1| ATP-dependent RNA helicase RhlB [Aliivibrio salmonicida LFI1238]
 gi|226739529|sp|B6EPA4|RHLB_ALISL RecName: Full=ATP-dependent RNA helicase rhlB
 gi|208007718|emb|CAQ77831.1| ATP-dependent RNA helicase RhlB [Aliivibrio salmonicida LFI1238]
          Length = 434

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 73/205 (35%), Gaps = 7/205 (3%)

Query: 512 PLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
           P   E  N L   T+       ++E  Q    +V +  + TG +        +      +
Sbjct: 187 PAPAERLNMLFSATLSYRVQELAFEHMQEPEHVVVEPDQKTGHLITEELFYPSNDHKMAL 246

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
              +    +   R ++   TK   E +  +L     RV  +  +V   +R  I+ +   G
Sbjct: 247 LQTLIE-EEWPDRAIIFANTKHKCELVWGHLAADKHRVGLLTGDVPQKKRERILEEFTKG 305

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYA 690
           + D+LV  ++   GL IP+   V   D   E         +  IGR  R   S   I +A
Sbjct: 306 EVDILVATDVAARGLHIPQVTHVFNFDLPNE-----AEDYVHRIGRTGRAGESGNSISFA 360

Query: 691 DTITKSIQLAIDETTRRREKQLEHN 715
                    AI+E       Q +++
Sbjct: 361 CEEYAINLPAIEEYIEHSIPQSDYD 385


>gi|195457392|ref|XP_002075549.1| GK21209 [Drosophila willistoni]
 gi|194171634|gb|EDW86535.1| GK21209 [Drosophila willistoni]
          Length = 457

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 90/267 (33%), Gaps = 53/267 (19%)

Query: 490 DFHRKATLA--EYGFRL----PSCMDNRPLRFEEWNCLRPTTIVVSAT-PG--------- 533
           D      L   E    L       +D+  L+        P  ++ SAT P          
Sbjct: 195 DMSHCKILVLDEADKLLSLDFQGMLDHVILKLP----KDPQILLFSATFPLTVKNFMEKH 250

Query: 534 ---SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
               +E+   + + ++ + +    V    ++           + +    Q    I +   
Sbjct: 251 LREPYEINLMEELTLKGVTQYYAFVQERQKVH--------CLNTLFSKLQINQSI-IFCN 301

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           + +  E L + + E      Y+H+++    R  +  D R G    LV  +L   G+D+  
Sbjct: 302 STQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQA 361

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
             +V   D     F R   + +  IGR+ R  +  + +   T      L       R EK
Sbjct: 362 VNVVINFD-----FPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDL------HRIEK 410

Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPIL 737
           +L           +  + I +VIDP L
Sbjct: 411 ELG----------TEIKPIPKVIDPAL 427


>gi|195387443|ref|XP_002052405.1| GJ17531 [Drosophila virilis]
 gi|194148862|gb|EDW64560.1| GJ17531 [Drosophila virilis]
          Length = 459

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 90/267 (33%), Gaps = 53/267 (19%)

Query: 490 DFHRKATLA--EYGFRL----PSCMDNRPLRFEEWNCLRPTTIVVSAT-PG--------- 533
           D      L   E    L       +D+  L+        P  ++ SAT P          
Sbjct: 197 DMSHCKILVLDEADKLLSLDFQGMLDHVILKLP----KDPQILLFSATFPLTVKNFMEKH 252

Query: 534 ---SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
               +E+   + + ++ + +    V    ++           + +    Q    I +   
Sbjct: 253 LREPYEINLMEELTLKGVTQYYAFVQERQKVH--------CLNTLFSKLQINQSI-IFCN 303

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           + +  E L + + E      Y+H+++    R  +  D R G    LV  +L   G+D+  
Sbjct: 304 STQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQA 363

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
             +V   D     F R   + +  IGR+ R  +  + +   T      L       R EK
Sbjct: 364 VNVVINFD-----FPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDL------HRIEK 412

Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPIL 737
           +L           +  + I +VIDP L
Sbjct: 413 ELG----------TEIKPIPKVIDPAL 429


>gi|195119205|ref|XP_002004122.1| GI18279 [Drosophila mojavensis]
 gi|193914697|gb|EDW13564.1| GI18279 [Drosophila mojavensis]
          Length = 459

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 90/267 (33%), Gaps = 53/267 (19%)

Query: 490 DFHRKATLA--EYGFRL----PSCMDNRPLRFEEWNCLRPTTIVVSAT-PG--------- 533
           D      L   E    L       +D+  L+        P  ++ SAT P          
Sbjct: 197 DMSHCKILVLDEADKLLSLDFQGMLDHVILKLP----KDPQILLFSATFPLTVKNFMEKH 252

Query: 534 ---SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
               +E+   + + ++ + +    V    ++           + +    Q    I +   
Sbjct: 253 LREPYEINLMEELTLKGVTQYYAFVQERQKVH--------CLNTLFSKLQINQSI-IFCN 303

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           + +  E L + + E      Y+H+++    R  +  D R G    LV  +L   G+D+  
Sbjct: 304 STQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQA 363

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREK 710
             +V   D     F R   + +  IGR+ R  +  + +   T      L       R EK
Sbjct: 364 VNVVINFD-----FPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDL------HRIEK 412

Query: 711 QLEHNKKHNINPQSVKEKIMEVIDPIL 737
           +L           +  + I +VIDP L
Sbjct: 413 ELG----------TEIKPIPKVIDPAL 429


>gi|161524403|ref|YP_001579415.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189350842|ref|YP_001946470.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|160341832|gb|ABX14918.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
 gi|189334864|dbj|BAG43934.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 505

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I ++Q +     +   V     R   + + D + 
Sbjct: 232 QTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIAQTVHYVDDRDHKDRLLDHLL 291

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             A      ++   TK  A+ L   L +   +   +H ++    R   IR LR  +  VL
Sbjct: 292 RDAALDQ-AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVL 350

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S + +    +  +
Sbjct: 351 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGIAVSL--VHHA 403

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 404 EQGALKRIER 413


>gi|118444590|ref|YP_878428.1| ATP-dependent RNA helicase [Clostridium novyi NT]
 gi|118135046|gb|ABK62090.1| ATP-dependent RNA helicase [Clostridium novyi NT]
          Length = 371

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 80/228 (35%), Gaps = 21/228 (9%)

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVE--------QI 548
           L E    L     N   +   +   +  T+  SAT  S   +     + E        + 
Sbjct: 150 LDEADQMLYMGFKNEVEKIISYTSKKHQTLCFSATMNSDVKKLAYRYMKEPKVVSVKAEE 209

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           +    +    VE    R Q + +   ++         ++   TKR  ++L E L++R   
Sbjct: 210 VTLKNIQQFVVETTDRRKQ-DALCSVLDE--DNPFMAIIFCRTKRRVDNLEEALHKRGYN 266

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H ++   +R  +++  +      L+  ++   GLDI     V   D        + 
Sbjct: 267 CDKLHGDLAQAKRERVMKKFKNMDTQYLIATDVAARGLDITGVTHVYSYD-----IPENA 321

Query: 669 TSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE----TTRRREKQ 711
            S I  IGR  R     K  L+ D   K +   I++    T  RR  +
Sbjct: 322 ESYIHRIGRTGRAGEEGKTCLFIDPKDKRLLETIEKEIKLTIPRRNIE 369


>gi|15930131|gb|AAH15505.1| DDX42 protein [Homo sapiens]
 gi|23336904|tpg|DAA00077.1| TPA_exp: SF3b125 DEAD-box protein [Homo sapiens]
 gi|158259277|dbj|BAF85597.1| unnamed protein product [Homo sapiens]
          Length = 819

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 314 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 373

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 374 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 432

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 433 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 487

Query: 696 S 696
           S
Sbjct: 488 S 488


>gi|18466743|ref|NP_569550.1| putative helicase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16506059|emb|CAD09945.1| putative helicase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
          Length = 519

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +  E  +    GL  +  V  KR  + L E + E  ++V +++ E     R   +  L
Sbjct: 355 EAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLNSL 414

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--V 686
             GK DVL+G  +L  G+D+P  G V +    K     ++  + Q +GR  R   ++  V
Sbjct: 415 AAGKIDVLIGSTILDVGVDVPSVGAVILGGGGK-----AEVEMRQRVGRGLRAKKNQANV 469

Query: 687 ILYADTITKSIQLAIDETTRRREK 710
               D I  S +  +  +  R+  
Sbjct: 470 CFITDFIDVSNKYLMSHSYERKHI 493


>gi|261204717|ref|XP_002629572.1| DEAD/DEAH box RNA helicase [Ajellomyces dermatitidis SLH14081]
 gi|239587357|gb|EEQ70000.1| DEAD/DEAH box RNA helicase [Ajellomyces dermatitidis SLH14081]
          Length = 587

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V +K  A+ L +YLY   +    +HS+    ER + +R  +  K  ++V   +  
Sbjct: 401 RTLVFVNSKAQADLLDDYLYNMGLPSTSIHSDRTQREREDALRAFKTAKSPIMVATGVSA 460

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            GLDI     V   D             I  IGR AR  N  +        ++  +A D
Sbjct: 461 RGLDIKNVMHVINFDMPSAAHG-GIEEYIHRIGRTARIGNEGLASSFYNHERNSDIAAD 518


>gi|260831524|ref|XP_002610709.1| hypothetical protein BRAFLDRAFT_202435 [Branchiostoma floridae]
 gi|229296076|gb|EEN66719.1| hypothetical protein BRAFLDRAFT_202435 [Branchiostoma floridae]
          Length = 427

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 74/218 (33%), Gaps = 29/218 (13%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E+   + + ++ I +    V    ++           + +    Q    I +   + +
Sbjct: 234 PYEINLMEELTLKGITQYYAFVQERQKVH--------CLNTLFSKLQINQSI-IFCNSTQ 284

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L + + E      Y+H+++    R  +  D R G    LV  +L   G+DI    +
Sbjct: 285 RVELLAKKITELGYSCYYIHAKMNQQHRNRVFHDFRNGACRNLVCSDLFTRGIDIQAVNV 344

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           V   D     F +   + +  IGR+ R  +  V +   T             R    ++E
Sbjct: 345 VINFD-----FPKMAETYLHRIGRSGRYGHLGVAINLITFDD----------RYNLHKIE 389

Query: 714 HNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                 I P        ++   + + +  +    ++ Q
Sbjct: 390 RELDTEIKPIP-----GDIDKSLYVAEYHSETGELEEQ 422


>gi|37912838|gb|AAR05178.1| putative ATP-dependent RNA helicase [uncultured marine
           proteobacterium ANT8C10]
          Length = 635

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 23/198 (11%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-----DVYDEIN 576
             ++ SAT  P   +L Q  G  + +I           +I+     V+     D+   + 
Sbjct: 180 QNLLFSATFSPEIKKLAQSLGDGLVEI-SAQSPNTTVSKIKQIVYHVDKNKKSDLLAHMI 238

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +Q  + L+   TK   E + +YL    I    +H +     R + +R+ +     VL
Sbjct: 239 E-EEQWDQALVFSKTKHGCEKIADYLNAAGIETGTIHGDKTQGARTKALREFKGKFVRVL 297

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-------- 688
           V  ++   G+DI     V   D             I  IGR  R       +        
Sbjct: 298 VATDVAARGIDISNLPFVVNFDMPTY-----PNDYIHRIGRTGRAGQEGTAISLMSSDEH 352

Query: 689 -YADTITKSIQLAIDETT 705
            +   I   +++ ID+T+
Sbjct: 353 KFLRGIEGLLKIKIDQTS 370


>gi|15898685|ref|NP_343290.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|284175881|ref|ZP_06389850.1| ATP-dependent RNA helicase [Sulfolobus solfataricus 98/2]
 gi|13815150|gb|AAK42080.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|261603175|gb|ACX92778.1| DEAD/DEAH box helicase domain protein [Sulfolobus solfataricus
           98/2]
          Length = 343

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 69/185 (37%), Gaps = 9/185 (4%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-EDVYDEINLAAQ 580
              T   SAT     +   +    +          P  E++    +V  D  D+++   +
Sbjct: 159 AKITGFFSATIPDEIMTLAKEFSKDLREIVLDEYKPVEEVKQIFVKVRNDWSDKVSKLLE 218

Query: 581 Q--GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +  G +IL+   T+  A  L   L  + + V  +  ++    R++     + GK++VLV 
Sbjct: 219 EISGEKILVFARTRDRARKLYFLLRGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVA 278

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            +L   G+DI +   V   D  ++       + I  +GR  R       + +       +
Sbjct: 279 TDLASRGIDIVDVDKVINFDIPRDV-----ETYIHRVGRTGRMGRVGQAVTFYTFREADM 333

Query: 698 QLAID 702
              I+
Sbjct: 334 IKRIN 338


>gi|332289421|ref|YP_004420273.1| ATP-dependent RNA helicase RhlB [Gallibacterium anatis UMN179]
 gi|330432317|gb|AEC17376.1| ATP-dependent RNA helicase RhlB [Gallibacterium anatis UMN179]
          Length = 399

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++   TK   E + +YL    +R   +  +V   +R  ++     G+ D+LV  ++ 
Sbjct: 253 ERCIIFANTKHQCEKIWQYLLADQLRAGLLTGDVPQKKRFALLEQFANGQLDILVATDVA 312

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAI 701
             GL IP+   V   D             +  IGR  R   + + I +A         AI
Sbjct: 313 ARGLHIPQVTHVFNYD-----LPDDYEDYVHRIGRTGRAGENGISISFACEDYAVNLPAI 367

Query: 702 DE 703
           ++
Sbjct: 368 EQ 369


>gi|326329383|ref|ZP_08195707.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
 gi|325952709|gb|EGD44725.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
          Length = 615

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 75/199 (37%), Gaps = 15/199 (7%)

Query: 523 PTTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
               + SAT            L   + I V+   +    +     + S   +V+ +   +
Sbjct: 202 KQVALFSATMPAQIRRLSKKYLRDAEEISVKAKTQTNTNITQRYLMVSYPQKVDALTRIL 261

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +   +G  +++   TK   E L E L  R      ++ ++   +R + +  L+ G  D+
Sbjct: 262 EVENFEG--MIVFTRTKSETESLAEKLRARGFAATAINGDIAQAQREKTVNQLKDGSLDI 319

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLD+     V   D           + +  IGR  R   +   I +     
Sbjct: 320 LVATDVAARGLDVERISHVVNYD-----LPTDVEAYVHRIGRTGRAGRTGDAISFVTPRE 374

Query: 695 KSIQLAIDETTRRREKQLE 713
           + +  AI++ T+ +  Q++
Sbjct: 375 RWLLRAIEKHTKAQPVQMQ 393


>gi|298709151|emb|CBJ31095.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 659

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 102/298 (34%), Gaps = 47/298 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L + +         E+H     +  +    F     L E GFR    ++N  LR  
Sbjct: 236 TPGRLLDLM---------ENHGLGRDMRDLDTLVFDEADQLLEMGFR--PAIENI-LRNL 283

Query: 517 EWNCLRPTTIVVSAT-PGS------------WELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           + +     T++ SAT PG             +E+  C G            V     +  
Sbjct: 284 QASKTYRQTLMFSATMPGDVQAIASIAMKPSYEVVDCVGEEEN----THQHVPQKFAVVP 339

Query: 564 ARTQVEDVYDEINLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
              Q+  +   I  A +    +I++  +  R+ +   E   +  + V   HS      R 
Sbjct: 340 MAEQIPRLLATILKAKEDPDHKIIVFFVAARIVQLHAELFTQMGVDVLETHSRKSQAART 399

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
            +    R GK  ++   ++   G+D P+  LV      + G        +  +GR AR  
Sbjct: 400 RVAEAFRNGKGQIMFTSDVSARGMDYPDVSLVI-----QVGLPSDTNQYVHRLGRTARAG 454

Query: 683 NSK----VILYADT--ITKSIQLAIDETTR------RREKQLEHNKKHNINPQSVKEK 728
                  V+  A+   I +   L ++E  R         +Q+     H ++P +V + 
Sbjct: 455 KGGSGLLVLAEAEKGFIREVGDLPLEEDERMDPGTMIEARQMVAGAVHRVDPVTVSKA 512


>gi|254480020|ref|ZP_05093268.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214039582|gb|EEB80241.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 440

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 20/198 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATP--------GSWELEQCQGIIVEQ 547
            + + GFR      +  ++   +       I++SAT             L   Q I V +
Sbjct: 157 RMLDMGFR------DDVMKLASFCGAERQVIMLSATLKHKGLGGVAKDLLRDPQTIEVSE 210

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
             +P   +     +  ++   + +   +        R L+    +  A+ L   L    +
Sbjct: 211 FRQPHSSIHHQRILADSQEHKDKLLCALMDKGGF-TRALVFANKRTTAQRLAGLLSHHGL 269

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           R   +H E+ T ER  ++   R  K D++   ++   GLD+ +  LV   D  ++G    
Sbjct: 270 RCGCLHGEMSTEERKHVMTQFRDSKVDMVCASDVAARGLDVKDIDLVVNYDLPQKG---- 325

Query: 668 KTSLIQTIGRAARNVNSK 685
               +   GR  R   + 
Sbjct: 326 -DDYLHRTGRTGRAGATG 342


>gi|220926974|ref|YP_002502276.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219951581|gb|ACL61973.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 506

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 66/199 (33%), Gaps = 11/199 (5%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQV--EDVYDEI 575
               ++  SAT            + + +   + P       VE R        +      
Sbjct: 181 KARQSLFFSATMPKNIATLAAQYLRDPVQVAVTPVATTAERVEQRVIHVSTGAKQALLGT 240

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            L  +   R+L+   TK  A+ +   L +  I    +H      +R   +   R G   V
Sbjct: 241 ILRDESIDRVLVFTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRAGTCRV 300

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   G+D+     V   D           + +  IGR AR       I + +   
Sbjct: 301 LVATDIAARGIDVEGVTHVVNFD-----LPNVPEAYVHRIGRTARAGADGLAISFCNEEE 355

Query: 695 KSIQLAIDETTRRREKQLE 713
           ++    I+  TR++  ++ 
Sbjct: 356 RAYLRDIERLTRQKVPEMA 374


>gi|229582467|ref|YP_002840866.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.N.15.51]
 gi|228013183|gb|ACP48944.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.N.15.51]
          Length = 360

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 69/185 (37%), Gaps = 19/185 (10%)

Query: 527 VVSATPGSW------ELEQCQGIIVEQIIRPTGLVDPP-VEIR-SARTQVEDVYDEINLA 578
             SAT          E  +    IV    +P   V    V++R     +V  + +EI   
Sbjct: 181 FFSATIPDEIMTLAKEFSKDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLLEEI--- 237

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
              G +IL+   T+  A  L   L  + + V  +  ++    R++     + GK++VLV 
Sbjct: 238 --NGEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            +L   G+DI +   V   D  ++       + I  +GR  R       I +       +
Sbjct: 296 TDLASRGIDIIDVNKVINFDIPRDV-----ETYIHRVGRTGRMGRVGQAITFYTFREADM 350

Query: 698 QLAID 702
              I+
Sbjct: 351 IKRIN 355


>gi|146305460|ref|YP_001185925.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145573661|gb|ABP83193.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 628

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 71/193 (36%), Gaps = 11/193 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGII--VEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +   ++ SAT      +    ++   E+I + P       +E R  R         +   
Sbjct: 184 KRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALLAHL 243

Query: 579 AQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             QG   ++L+   TK  A  L EYL +  +    +H       R + + D +  K  +L
Sbjct: 244 ITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANKVRIL 303

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI +   V   +         +   +  IGR  R   S   I       +
Sbjct: 304 VATDIAARGLDIDQLPHVVNFE-----LPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEE 358

Query: 696 SIQLAIDETTRRR 708
            +  +I+  T+++
Sbjct: 359 KLLKSIERMTKQK 371


>gi|51892785|ref|YP_075476.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51856474|dbj|BAD40632.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 526

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 69/181 (38%), Gaps = 18/181 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVD---------PPVEIRSARTQVEDVYDE 574
            T++ SAT    E+ +  G  +   I  +                E+R +  + E +   
Sbjct: 181 QTLLFSAT-MPPEIRRLAGRYMRDPITISVTPQQLTVPQIDQYFCEVRPSF-KTEALTRI 238

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++   +   R +    TK+  ++L E L  R  +   +H ++   +R  ++   + G  +
Sbjct: 239 LD--IENVERGICFCRTKKGVDELVEALQARGYQAEGIHGDMNQAQRNRVMSRFKEGYIE 296

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   GLDI +   V   D       +   S +  IGR  R   +   +   T  
Sbjct: 297 LLVATDVAARGLDISDVTHVFNYD-----IPQDPESYVHRIGRTGRAGRTGTAITLVTPR 351

Query: 695 K 695
           +
Sbjct: 352 E 352


>gi|325995530|gb|ADZ50935.1| Cold-shock DEAD-box protein A [Helicobacter pylori 2018]
 gi|325997128|gb|ADZ49336.1| ATP dependent RNA helicase [Helicobacter pylori 2017]
          Length = 491

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 34/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++        +  H  +P++  +   D      + + GF     +D+    F+
Sbjct: 144 TPGRLLDHLKN------ERIHKFVPKVVVLDESD-----EMLDMGF-----LDDIEEIFD 187

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVY 572
                    ++ SAT     +++    I+E  I+    P+ + +  +  R       +  
Sbjct: 188 YLPSEA-QILLFSAT-MPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERA 245

Query: 573 DEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + I      Q   + ++   TK+ A++L ++L  +N +   +H ++   +R   I   + 
Sbjct: 246 EAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              DVLV  ++   GLDI     V            +  S I  IGR  R     + +  
Sbjct: 306 NDADVLVATDVASRGLDISGVSHVFNYH-----LPLNTESYIHRIGRTGRAGKKGMAITL 360

Query: 691 DTITK-----SIQLAID 702
            T  +      +Q  ID
Sbjct: 361 VTPLEYKELLRMQKEID 377


>gi|296478242|gb|DAA20357.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [Bos taurus]
          Length = 484

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 274 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNSRDEKFQ 327

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 328 ALCNIYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREG 387

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 388 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 446

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 447 MVDSKHSMNIL----NR---IQEHFNKK 467


>gi|221483330|gb|EEE21649.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
 gi|221507816|gb|EEE33403.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
          Length = 550

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 5/125 (4%)

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
              +      G +IL+   TKR A++LT  +         +H + K  ER  ++ + + G
Sbjct: 365 LMSLLRRIMDGSKILIFAETKRGADNLTRDMRVEGWPALSLHGDKKQEERTWVLDEFKNG 424

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  ++V  ++   GLD+ +   V   D             I  IGR  R           
Sbjct: 425 RNPIMVATDVASRGLDVKDIRHVINYD-----MPNQIEDYIHRIGRTGRAGAKGCAYTFF 479

Query: 692 TITKS 696
           T  K 
Sbjct: 480 TPDKP 484


>gi|237839461|ref|XP_002369028.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|211966692|gb|EEB01888.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
          Length = 550

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 5/125 (4%)

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
              +      G +IL+   TKR A++LT  +         +H + K  ER  ++ + + G
Sbjct: 365 LMSLLRRIMDGSKILIFAETKRGADNLTRDMRVEGWPALSLHGDKKQEERTWVLDEFKNG 424

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  ++V  ++   GLD+ +   V   D             I  IGR  R           
Sbjct: 425 RNPIMVATDVASRGLDVKDIRHVINYD-----MPNQIEDYIHRIGRTGRAGAKGCAYTFF 479

Query: 692 TITKS 696
           T  K 
Sbjct: 480 TPDKP 484


>gi|164659482|ref|XP_001730865.1| hypothetical protein MGL_1864 [Malassezia globosa CBS 7966]
 gi|159104763|gb|EDP43651.1| hypothetical protein MGL_1864 [Malassezia globosa CBS 7966]
          Length = 557

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 83/240 (34%), Gaps = 29/240 (12%)

Query: 480 IPQISGMYRGDFHRKATLAEYGF-----RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS 534
           + Q+  +   +  R   L E GF      + +   N  LR   ++   P         G 
Sbjct: 261 LSQVELLVLDEADR---LLELGFLEQTDAILAACTNPSLRKALFSATLPA--------GV 309

Query: 535 WELEQCQ-GIIVEQIIRPTGLVDPPVEIR-----SARTQVEDVYDEINLAAQQGLRILLT 588
            EL +         ++         +E R     S   ++  +   I     Q   +LL 
Sbjct: 310 EELAKTFMVDECRVLVGQKDSATATIEQRLEFTGSEDGKLHALRALIQAGGMQPP-VLLF 368

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V + + A +L   L    + V  +HSE    +R  +I+  R G   +L+   L+  G+D 
Sbjct: 369 VQSIQRARELFHELVYDGLHVDVIHSERPKAQREAVIQAFRRGDIWLLICTELMARGIDF 428

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSIQLAIDETTRR 707
               LV   D     F ++  S I  IGR  R     K I Y          ++    R+
Sbjct: 429 HGVNLVINYD-----FPQTVQSYIHRIGRTGRAGKQGKAITYFTKDDAPYLKSVVNVMRQ 483


>gi|145588844|ref|YP_001155441.1| DEAD/DEAH box helicase domain-containing protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047250|gb|ABP33877.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 500

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 69/210 (32%), Gaps = 15/210 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIR----SARTQVEDVYDE 574
           R  T++ SAT     +     +  +     +   G     +E +     + +    + + 
Sbjct: 201 RNQTLMFSATFAPKIMSLANELTTDAKRIELAHAGEKHANIEQKLHWADSMSHKHKLLEH 260

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I   A      ++   T+  +E + + L         +H  +    R+  +  LR G   
Sbjct: 261 ILADATLDQ-AVVFASTQVESEKIADTLRANGYEASALHGAMPQAVRMRRLESLRKGHTK 319

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   G+D+P    V        G           IGR  R   + V +      
Sbjct: 320 ILVATDVAARGIDVPRISHVINF-----GLPMKPEDYTHRIGRTGRAGRNGVAITLVEHR 374

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQS 724
              +  I    R  ++ +  +    + PQ+
Sbjct: 375 DRAK--IRNIERFTQQDIVASVIAGLEPQA 402


>gi|302670646|ref|YP_003830606.1| RNA helicase DEAD/DEAH box family protein [Butyrivibrio
           proteoclasticus B316]
 gi|302395119|gb|ADL34024.1| RNA helicase DEAD/DEAH box family [Butyrivibrio proteoclasticus
           B316]
          Length = 711

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 77/206 (37%), Gaps = 17/206 (8%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+   TKRM + L E L  +      +H ++   +R  ++   R G+ ++L+  ++  
Sbjct: 301 RSLIFCNTKRMVDQLAESLKGKGYLADGLHGDLSQNQRDTVMNLFRNGRINILIATDVAA 360

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            G+D+     V   D             +  IGR  R   S +        +  +L   E
Sbjct: 361 RGIDVSGVEAVFNYD-----IPEDIEYYVHRIGRTGRAGRSGMSFTLVGGREMYKLREIE 415

Query: 704 TTRRREKQLEH-NKKHNINPQSVKEKIMEVIDPILLEDAAT--TNISIDAQQLSLSKKKG 760
                + +  H  K   I     ++   EVID I   D ++    ++   ++   + ++ 
Sbjct: 416 KVCHTKIEERHVPKAKEITRVKSQKVFAEVIDIIENGDISSVLEFVNQKVEEGEYTAEQL 475

Query: 761 KAHLKSLRKQMHLAADNLN----FEE 782
            A    L  +M     +L     FE+
Sbjct: 476 AAGFMKL--KM---GADLEDLVLFEK 496


>gi|254487619|ref|ZP_05100824.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
 gi|214044488|gb|EEB85126.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
          Length = 437

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 73/221 (33%), Gaps = 27/221 (12%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----P 551
            + + GF      D R  +          T++ SAT     + +     +   IR    P
Sbjct: 160 QMLDMGFI----HDLR--KIASVLPKERQTMLFSAT-MPKLMNEIANSYLNSPIRIEVSP 212

Query: 552 TGLVDPPV--EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
            G     V  E+       +       LA     R L+   TK   E L + L +   + 
Sbjct: 213 PGKAADKVTQEVHFIAKAEKKALLIELLAKHTEERALVFGRTKHGCEKLMKDLVKSGFKA 272

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H      +R   I   + G   VLV  ++   GLDIP+   V   +           
Sbjct: 273 ASIHGNKSQGQRDRAIESFKKGDITVLVATDVAARGLDIPDVKHVYNYE-----LPNVPD 327

Query: 670 SLIQTIGRAARNVNSKVILYAD---------TITKSIQLAI 701
           + +  IGR AR       +             I K++++AI
Sbjct: 328 NYVHRIGRTARAGKDGAAIAFCAPDEMGELKDIQKTMKIAI 368


>gi|167624931|ref|YP_001675225.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167354953|gb|ABZ77566.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 436

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 92/258 (35%), Gaps = 18/258 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVED--VYDEINLAAQ 580
            T++ SAT      E  +  IV  I I  T   D   +I      V+       ++   Q
Sbjct: 180 QTLLFSATLSRQVKELARATIVRPIEISVTHNTDNKPKIEQWLVTVDKDKKSALLSHLIQ 239

Query: 581 QG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +    + L+ + TK+ A  L   L +R I    +H       R +I+ D + GK  +L+ 
Sbjct: 240 ENNWQQALIFIETKQGAAKLVSQLEKRGITAECIHGGRSQEIREQILADFKAGKIGLLIA 299

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             +   GLDI E  LV   D             I  IGR  R   S   +   +      
Sbjct: 300 TGIAARGLDIDELPLVINYD-----LPYPADDYIHRIGRTGRAGASGEAVALVSKDDFKN 354

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
           L + E+  R    +E  +     P+       EV   IL     +  I+   ++     K
Sbjct: 355 LCMIES--RLGHLIERREIEGFAPR------KEVPVSILNYKPKSKQIAGGDKKPHRDAK 406

Query: 759 KGKAHLKSLRKQMHLAAD 776
           +  +H  + + +   +  
Sbjct: 407 EPISHKANNKSESKESGK 424


>gi|157804046|ref|YP_001492595.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. McKiel]
 gi|157785309|gb|ABV73810.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. McKiel]
          Length = 410

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 74/214 (34%), Gaps = 10/214 (4%)

Query: 495 ATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL 554
             L E    L   M  +     ++   +   ++ SAT     +   Q  +   +    G 
Sbjct: 143 TVLDEMDRMLDMGMKEQLEEINKFLPEKRQFLMFSATMPKHIITLSQKYLNNPVRITVGA 202

Query: 555 VDPPV-EIRSARTQVEDVYDEINLAAQQGLR---ILLTVLTKRMAEDLTEYLYERNIRVR 610
            +    EI+     + D      L  Q   R   +++ V T+R A+ L   L   N +  
Sbjct: 203 NNKAAAEIKQESIHIADKEKFSELTKQLDNREGSVIIFVKTRRSADQLANMLKYENHKAE 262

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H ++   +R  +I   R     ++V  ++   GLDIP    V   D            
Sbjct: 263 AIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYD-----LPMCPED 317

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
            +  IGR  R   +   L   +    I+  AID 
Sbjct: 318 YLHRIGRTGRAGATGHALSFISPEDVIRWRAIDR 351


>gi|104783928|ref|YP_610426.1| ATP-dependent RNA helicase DbpA [Pseudomonas entomophila L48]
 gi|95112915|emb|CAK17643.1| ATP-dependent RNA helicase [Pseudomonas entomophila L48]
          Length = 461

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 88/211 (41%), Gaps = 18/211 (8%)

Query: 522 RPTTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
           R  T++ SAT P   E      + Q Q + VE +   + +    +EI   + ++E V   
Sbjct: 180 RRQTLLFSATYPAGIEQLAKDFMRQPQQVKVEALHSDSQIEQRFIEIDPQQ-RLEAVTRV 238

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +     Q    +    TK+  EDL  +L  + I  + +H +++  +R +++         
Sbjct: 239 LGHYRPQS--CVAFCFTKQQCEDLVTHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSS 296

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VLV  ++   GLDI    LV  ++  ++  +      +  +GR  R     V +      
Sbjct: 297 VLVATDVAARGLDIDGLDLVINVELARDAEIH-----VHRVGRTGRAGEKGVAISLVAPA 351

Query: 695 KSIQ-LAIDETTRR--REKQLEHNKKHNINP 722
           +  +  AI++   +  R +QL++ K     P
Sbjct: 352 EGHRAQAIEDLQNKPLRWEQLDNLKSKGGEP 382


>gi|6468270|emb|CAB61567.1| ATP-dependent RNA helicase [Candida albicans]
          Length = 399

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 10/126 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK     L + + ++N  V  MH ++K  ER  I+ D R
Sbjct: 258 DLYDNLTIT-----QAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VL+  ++   G+D+ +  LV   D         K + I  IGR+ R       + 
Sbjct: 313 RGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTDKENYIHRIGRSGRFGRKGTAIN 367

Query: 690 ADTITK 695
             T   
Sbjct: 368 LITKDD 373


>gi|15228722|ref|NP_188870.1| PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1); ATP-dependent
           helicase/ DNA binding / RNA binding [Arabidopsis
           thaliana]
 gi|75335517|sp|Q9LUW6|RH9_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 9
 gi|9293865|dbj|BAB01768.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|20268676|gb|AAM14042.1| putative RNA helicase [Arabidopsis thaliana]
 gi|332643099|gb|AEE76620.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]
          Length = 610

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G + ++   TKR A+ L   L  ++ +   +H ++   +R   +   R G F +LV  +
Sbjct: 360 KGGKCIVFTQTKRDADRLAFGLA-KSYKCEALHGDISQAQRERTLAGFRDGNFSILVATD 418

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           +   GLD+P   LV            +  + +   GR  R       +      ++  + 
Sbjct: 419 VAARGLDVPNVDLVI-----HYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVK 473

Query: 701 IDETT 705
           + E  
Sbjct: 474 MIEKE 478


>gi|329960847|ref|ZP_08299126.1| ATP-dependent RNA helicase RhlE [Bacteroides fluxus YIT 12057]
 gi|328532133|gb|EGF58937.1| ATP-dependent RNA helicase RhlE [Bacteroides fluxus YIT 12057]
          Length = 423

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 89/303 (29%), Gaps = 67/303 (22%)

Query: 493 RKATLAEYGFRLPSCMDNRPL----------------RFEEWNCLRPTTIVVSAT--PGS 534
           R   L   GF     +D   L                R  ++   +  T+  SAT  P  
Sbjct: 131 RLQDLVNQGFINLKALDFFVLDEADRMLDMGFIHDIRRILKFLPAKRQTLFFSATMPPEI 190

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR---------- 584
             L        E+           VE+  A + V+ +   +    ++  +          
Sbjct: 191 ETLANSMLTDPEK-----------VEVTPASSTVDTISQSVYFVEKKEKKDLLIHLLKDP 239

Query: 585 ----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
               +L+   TK  A+ L   L +  I    +H       R   +   +     VL+  +
Sbjct: 240 SIASVLIFTRTKHGADKLARTLSKSGIPAEAIHGNKSQNARQRALTGFKSHTLRVLIATD 299

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           +   G+D+ +   V   +           + +  IGR  R  +  + L            
Sbjct: 300 IAARGIDVDQLSHVINYE-----LPNIPETYVHRIGRTGRAGHDGIALSFCES------- 347

Query: 701 IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG 760
            +E    ++ Q           + + + I  + D   +            +++ +  K+ 
Sbjct: 348 -EELPYLKDIQ-----------KLIGKTIPIIKDHPFITTDGIQAQEKKTEEIKVKAKEN 395

Query: 761 KAH 763
           K +
Sbjct: 396 KKY 398


>gi|302307011|ref|NP_983480.2| ACR078Wp [Ashbya gossypii ATCC 10895]
 gi|299788794|gb|AAS51304.2| ACR078Wp [Ashbya gossypii ATCC 10895]
          Length = 466

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 1/128 (0%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L     +V  +H ++++ +R  +I D R G+  VL+  N+L  G
Sbjct: 319 IIFVQTKQTANMLYTELKREGHQVSILHGDLQSADRDRLIGDFREGRSKVLITTNVLARG 378

Query: 646 LDIPECGLVAILDADKEGFL-RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           +DIP   +V   D           ++ +  IGR  R   + V +      KS +      
Sbjct: 379 IDIPTVSMVVNYDLPMTANGQPDPSTYVHRIGRTGRFGRTGVAISFIHDKKSYETLAAIQ 438

Query: 705 TRRREKQL 712
           +   + Q+
Sbjct: 439 SYFGDIQI 446


>gi|294658482|ref|XP_460822.2| DEHA2F10538p [Debaryomyces hansenii CBS767]
 gi|218511820|sp|Q6BLU9|PRP28_DEBHA RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|202953164|emb|CAG89165.2| DEHA2F10538p [Debaryomyces hansenii]
          Length = 580

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 78/255 (30%), Gaps = 36/255 (14%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFR---------LP-SCMDNRPLRFEEWNCL 521
            +D     I  +S  Y         + + GF          LP S      +  + +N  
Sbjct: 298 LIDSLERGIINLSNCYFFTMDEADKMIDMGFEKSLQSILNYLPASEKLETTIDGKIFNIK 357

Query: 522 RPTTIVVSATPGSWELEQCQGII-----------------VEQIIRPTGLVDPPVEIRSA 564
           +  T++ +AT      +  +  +                 + Q     G      EI   
Sbjct: 358 KRITLMFTATISPPIEKITKNYLMKPGYLFIGNVGEAVDNINQQFEYFGARQSSDEILDP 417

Query: 565 RTQVEDVYDEINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNI-RVRYMHSEVKTLER 621
           + +++ ++  +       +   I++    K+  E+L   L  +       +H       R
Sbjct: 418 K-KLDKLFSILRFHKDENRNYSIIIFANFKKACEELAYELSRKGFSDNTVIHGSKSQEAR 476

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
              I   R GK  +L+  ++   G+DIP   LV      K+         I  IGR  R 
Sbjct: 477 ERAIDSFREGKDKILIATDVAARGIDIPNVSLVVNYQMTKK-----FDEYIHRIGRTGRA 531

Query: 682 VNSKVILYADTITKS 696
            N            S
Sbjct: 532 GNKGTSCTFIDDGDS 546


>gi|168185435|ref|ZP_02620070.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
 gi|169296498|gb|EDS78631.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
          Length = 476

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 63/185 (34%), Gaps = 21/185 (11%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TK    ++   +       + +H  +   +R+  I D + GKF  LV  ++   
Sbjct: 242 AIIFCNTKVEVGNVANKMKNEGFNAKALHGGMDQKDRLYTINDFKRGKFQFLVATDVAAR 301

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE 703
           G+D+ E   V   +   E     K   +  IGR  R  +  K I +     K +   I+E
Sbjct: 302 GIDVEEITHVINYEVPVE-----KEGYVHRIGRTGRAGHKGKSITFVSDYEKRMFNEIEE 356

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
                   + ++      P+   ++I +  +    +           +   +   +    
Sbjct: 357 Y-------IGYS-----VPE---KEIPQEEEIEKGKKLFEEKARQRPKFKKVKGHEIDKK 401

Query: 764 LKSLR 768
           +  + 
Sbjct: 402 ITKIH 406


>gi|91792106|ref|YP_561757.1| ATP-dependent RNA helicase SrmB [Shewanella denitrificans OS217]
 gi|91714108|gb|ABE54034.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 411

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 13/165 (7%)

Query: 561 IRSARTQVEDVYDEINLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           I  A  Q        NL  Q+   R ++ V T+ +   L   L +  I   +M  +++  
Sbjct: 223 IHLADDQTHKFALLCNLLRQESVKRTIVFVKTREVVASLEGLLLKEGISCAFMRGDMEQK 282

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R + +     G+ D+L+  ++   G+DI +   V   D  +     S  + +  IGR  
Sbjct: 283 KRFQALGRFTKGEVDILLATDVAARGIDIDDITHVINYDMPR-----SADAYVHRIGRTG 337

Query: 680 RNVNSKVILYAD-----TITKSIQLAIDETTRRREKQLEH--NKK 717
           R       +         I   I+  I++  +RR  +     NK+
Sbjct: 338 RAGAKGTAISLVEAHDMRIVSKIERYIEQPLKRRVIEELRPNNKE 382


>gi|332296357|ref|YP_004438280.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
           DSM 14796]
 gi|332179460|gb|AEE15149.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
           DSM 14796]
          Length = 531

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 10/132 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TK+  ++L   L  R      +H ++   +R ++++  R    +VLV  ++  
Sbjct: 243 KTIIFCRTKKGVDELVASLNTRGYSAEGLHGDLTQAQRDKVMKSFRERNLEVLVATDVAA 302

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-----SIQ 698
            GLDI +   V   D       +   S +  IGR  R   S + +   T  +      I+
Sbjct: 303 RGLDISDVSHVINFD-----IPQDPESYVHRIGRTGRAGKSGIAITFITPREFRQLRLIE 357

Query: 699 LAIDETTRRREK 710
             I  T +R+E 
Sbjct: 358 KVIRTTIKRKEV 369


>gi|330501389|ref|YP_004378258.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328915675|gb|AEB56506.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 632

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 11/191 (5%)

Query: 524 TTIVVSATPGSWELEQCQGII--VEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             ++ SAT      +    ++   E+I + P       +E R  R         +     
Sbjct: 186 QNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALLAHLIT 245

Query: 581 QG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           QG   ++L+   TK  A  L EYL +  +    +H       R + + D +  K  +LV 
Sbjct: 246 QGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKASKVRILVA 305

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI +   V   +         +   +  IGR  R   S   I       + +
Sbjct: 306 TDIAARGLDIDQLPHVVNFE-----LPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 698 QLAIDETTRRR 708
             +I+  T+++
Sbjct: 361 LKSIERMTKQK 371


>gi|327479422|gb|AEA82732.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
          Length = 441

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 84/264 (31%), Gaps = 49/264 (18%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF--RLPSCMDNRPLR 514
            P  L +           ++ V   Q+  +   +  R     + GF   L +     P  
Sbjct: 131 TPGRLLD--------LYRQNAVGFAQLQALVLDEADRM---LDLGFAEELDALFSALP-- 177

Query: 515 FEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
                  +  T++ SAT             + Q+ R        VE+       + V   
Sbjct: 178 ------KKRQTLLFSAT---------FSEPIRQMARELLRDPLSVEVSPRNAAAKTVKQW 222

Query: 575 INLAAQQGL--------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +    ++                ++L+ V T++  + L + L  + I    +H +     
Sbjct: 223 LVPVDKKRKSELFLHLLAERRWGQVLVFVKTRKGVDQLVDELQAQGIASDAIHGDKPQAS 282

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+  +   + G+  VLV  ++   GLDI +   V   D             +  IGR  R
Sbjct: 283 RLRALERFKAGEVQVLVATDVAARGLDIHDLPQVVNFDLPIV-----AEDYVHRIGRTGR 337

Query: 681 NVNSKVILYADTITKSIQLAIDET 704
              S   +      +  QLA  ET
Sbjct: 338 AGASGEAISLVAADEVDQLAAIET 361


>gi|315127484|ref|YP_004069487.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315015998|gb|ADT69336.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 415

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 69/178 (38%), Gaps = 10/178 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVEDVYDE---INLAA 579
            T++ SAT      E  + ++ + ++I         VE+      V++        ++  
Sbjct: 183 QTLLFSATFDDSVFELSKKLLKDPELIEVDKRNSAAVEVEQVIYAVDEDRKRELVSHMIG 242

Query: 580 QQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +  R +L+   TK+MA+ L + + +  ++   +H +     R   + + + G   VLV 
Sbjct: 243 MKNWRQVLIFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALHNFKEGSTRVLVA 302

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            ++   GLDIP    V   +             +  IGR  R     + +   ++ + 
Sbjct: 303 TDVAARGLDIPALKYVINFE-----LPYIAEDYVHRIGRTGRAGEQGLAMSLVSLDEQ 355


>gi|224078085|ref|XP_002191498.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Taeniopygia
           guttata]
          Length = 770

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 95/269 (35%), Gaps = 25/269 (9%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRS-ARTQVE 569
                T++ SAT  + E++    + ++  +R            L    + IR       E
Sbjct: 354 SHHRQTMLFSAT-MTEEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDRE 412

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   +     Q   ++L   TK+ A  +   L    +RV  +H  +   +R+E +R  +
Sbjct: 413 AIVTALLTRTFQDH-VMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQTQRLESLRRFK 471

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
             + D+LV  ++   GLDI     V            +    +  +GR AR   +   + 
Sbjct: 472 DEQIDILVATDVAARGLDIEGVKTVINF-----TMPNTIKHYVHRVGRTARAGKAGRSVS 526

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                 + +   I +T +          K  I PQ V  K  E I+ +  +  A   +  
Sbjct: 527 LVGEEERKMLKEIVKTAK-------TPVKARILPQDVILKFREKIENLEKDIYAVLCLER 579

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADN 777
           + +++  S+ +     K L      A   
Sbjct: 580 EEREMQQSEAQINKAKKQLETGKKEAGSE 608


>gi|254514732|ref|ZP_05126793.1| RNA helicase DbpA [gamma proteobacterium NOR5-3]
 gi|219676975|gb|EED33340.1| RNA helicase DbpA [gamma proteobacterium NOR5-3]
          Length = 462

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 72/204 (35%), Gaps = 37/204 (18%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT     + +    I              V +       ++V +++    Q+  
Sbjct: 180 QTLLFSAT-YPENIRKMSASIQRSP--------TMVTVDEDVGHADEVIEQLFFEVQKHE 230

Query: 584 R---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           R                ++   TK+  +++ + L E +I  R +H +++  ER +++   
Sbjct: 231 RNTTLLALFEHYRPANAVVFCNTKKQCDEVAKILQEYDIEARAIHGDLEQRERDQVLVQF 290

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
                 VLV  ++   GLDI    +V   +       R     +  IGR  R   + + +
Sbjct: 291 SNNSCPVLVATDVAARGLDIKALAMVINYE-----LPRDPDVYVHRIGRTGRAGETGLAM 345

Query: 689 YADTITKSIQLAIDETTRRREKQL 712
                +        ET R R+ + 
Sbjct: 346 SIVIPS--------ETQRIRKIEE 361


>gi|194205945|ref|XP_001503679.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Equus
           caballus]
          Length = 738

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 39/256 (15%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 320 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 379

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 380 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 493

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 494 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 540

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 541 AVDFFRPSAQRLIEEK 556


>gi|167754851|ref|ZP_02426978.1| hypothetical protein CLORAM_00355 [Clostridium ramosum DSM 1402]
 gi|167704901|gb|EDS19480.1| hypothetical protein CLORAM_00355 [Clostridium ramosum DSM 1402]
          Length = 436

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 79/215 (36%), Gaps = 23/215 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            + + GF      D R  +   +   R  T++ SAT    E++     ++   ++   + 
Sbjct: 160 RMLDMGFI----KDIR--KILRFIPRRHQTMLFSAT-LPDEIKHLVSDLLNDPLKIM-IS 211

Query: 556 DPPVEIRSARTQVEDVYDEINLAA--------QQGLRILLTVLTKRMAEDLTEYLYERNI 607
              V +     Q     D++N A          Q    ++ V TKR  + L + L +  I
Sbjct: 212 SGNVTVEKI-NQSLYFVDKVNKAKLLIKLLENPQIYNAIVFVRTKRNVDTLCKKLIKAQI 270

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
               +H +     R+  + + +  K  VLV  ++   G+DI E   V   D         
Sbjct: 271 TCEGIHGDKSQNARVRALNNFKNDKVRVLVASDIAARGIDIDELTHVINFD-----LPDQ 325

Query: 668 KTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             + +  IGR AR   S   I +     K++   I
Sbjct: 326 AENYVHRIGRTARAGASGEAITFCSFQEKALLKDI 360


>gi|154504732|ref|ZP_02041470.1| hypothetical protein RUMGNA_02239 [Ruminococcus gnavus ATCC 29149]
 gi|153794906|gb|EDN77326.1| hypothetical protein RUMGNA_02239 [Ruminococcus gnavus ATCC 29149]
          Length = 550

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 16/171 (9%)

Query: 523 PTTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDE 574
             T++ SAT      E+ +      E +      +    +     E++      E+V   
Sbjct: 202 HQTVLFSATMPKAILEITKQFQTNAELVKVTKKELTVPNIEQFYYEVKPKNK--EEVLSR 259

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +       L + +   TK+  + L   L  R      +H ++K  +R  +++  R GK D
Sbjct: 260 LLDIYTPKLSV-VFCNTKKQVDLLVNGLLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTD 318

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +LV  ++   G+D+ +   V   D       +     +  IGR  R     
Sbjct: 319 ILVCTDVAARGIDVDDVEAVFNYD-----LPQDDEYYVHRIGRTGRAGRVG 364


>gi|50842805|ref|YP_056032.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
           KPA171202]
 gi|50840407|gb|AAT83074.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
           KPA171202]
 gi|314923604|gb|EFS87435.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1]
 gi|314966442|gb|EFT10541.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
 gi|315092781|gb|EFT64757.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
 gi|315103751|gb|EFT75727.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
 gi|315105899|gb|EFT77875.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
 gi|327327264|gb|EGE69040.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL103PA1]
          Length = 561

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 16/174 (9%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-----DVYDEIN 576
            T++ SAT P     L + Q      + R  G  D    +   +  V      D  + I 
Sbjct: 238 QTMLFSATMPAPIMALARSQLHRPVHV-RAEG-ADTQATVPDTQQFVYQAHPLDKIEIIG 295

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              Q     ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G   
Sbjct: 296 RILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGDAT 355

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +LV  ++   G+D+     V   +         + + +  IGR  R     V +
Sbjct: 356 ILVATDVAARGIDVTGVSHVINHEC-----PEDEKTYVHRIGRTGRAGAKGVAV 404


>gi|21221313|ref|NP_627092.1| helicase [Streptomyces coelicolor A3(2)]
 gi|6689196|emb|CAB65593.1| putative helicase [Streptomyces coelicolor A3(2)]
          Length = 945

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 92/230 (40%), Gaps = 36/230 (15%)

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
           AR  V+ V D+I+      +R L   +TK  A  + +Y      +   + S+  +  R +
Sbjct: 443 ARIIVKQVRDKISDPGA--MRALGFCVTKAHAHFMADYFRRAGFQAAALDSDSSSEVRAQ 500

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +RDL+ GK  V+  ++L  EGLDIP+   + +L         S T  +Q +GR  R  +
Sbjct: 501 ALRDLQDGKLQVIFSVDLFNEGLDIPDVDTLLLLRPT-----NSATVFLQQLGRGLRRTD 555

Query: 684 SKVILYADTITKSIQ---------LAIDETTRRREKQLEHNKKHN---------INPQSV 725
           +K +L         +          A+   +R R   L  + +           I  +  
Sbjct: 556 TKPVLTVLDFIGQHRAEFRFEEQFRAMTNLSRNR---LVEHIERGFPQLPSGCQIILEGK 612

Query: 726 KEKIMEVIDPILLEDAATTNISIDAQQLSLSK------KKGKAHLKSLRK 769
            + +  V+D I  + AAT    +   +   +       ++ +  +K L K
Sbjct: 613 AKSL--VLDNIRTQLAATVKTLVKEVKEYSTPLLADYLRESRREIKELYK 660


>gi|120597666|ref|YP_962240.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120557759|gb|ABM23686.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 550

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 11/195 (5%)

Query: 521 LRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSAR-TQVEDVYDE 574
            +   ++ SAT      E  +G++   VE  + P       V+  +      Q   +  +
Sbjct: 188 KQRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKSALLTQ 247

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +        ++L+   TK  A  L + L E  I+   +H       R + + D + G+  
Sbjct: 248 LI-KQHDWQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVR 306

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI- 693
           VLV  ++   GLDI +   V   D             I   GRA  +  +  ++ ++ I 
Sbjct: 307 VLVATDIAARGLDIDQLPQVVNFDLP--NVPEDYVHRIGRTGRAGASGQAVSLVSSEEIK 364

Query: 694 -TKSIQLAIDETTRR 707
               I+  I+    R
Sbjct: 365 LLNDIERLINRILDR 379


>gi|322412126|gb|EFY03034.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 539

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 97/263 (36%), Gaps = 27/263 (10%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRP-----TGLVDPPVEIRSARTQVEDVYDEINL 577
            T++ SAT P   +    + +   + ++      T +      +R    +  D    +  
Sbjct: 176 QTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLMD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              Q    ++   TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV
Sbjct: 236 -VNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +  
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIT-----QDPESYVHRIGRTGRAGKSGESITFVSPNEMG 349

Query: 698 QLAIDETTRRREKQL----------EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
            L++ E     +KQ+              K  +  + ++    + +     +      I 
Sbjct: 350 YLSMIENL--TKKQMKPLCPATAEEAFQAKKKVALKKIERDFADDVIRSNFDKFKGDAIQ 407

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQ 770
           + A+    + ++   ++ SL  Q
Sbjct: 408 LAAEF---TPEELALYILSLTVQ 427


>gi|313500956|gb|ADR62322.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida BIRD-1]
          Length = 592

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 71/202 (35%), Gaps = 29/202 (14%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           +   ++ SAT       +    + +++++        +E+    T VE +   +      
Sbjct: 150 KRQNLLFSAT-----FSKDITDLADKLLQNP----ERIEVTPPNTTVERIEQRVYRLPAS 200

Query: 582 GLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
             R              +L+   TK  A  L EYL ++ +    +H       R + + D
Sbjct: 201 HKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALAD 260

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-V 686
            +     VLV  ++   GLDI +   V   +         +   +  IGR  R   S   
Sbjct: 261 FKANSVRVLVATDIAARGLDIDQLPHVVNFE-----LPNVEEDYVHRIGRTGRAGRSGEA 315

Query: 687 ILYADTITKSIQLAIDETTRRR 708
           I       + +  +I+  T++R
Sbjct: 316 ISLVAPDEEKLLKSIERVTKQR 337


>gi|332140113|ref|YP_004425851.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550135|gb|AEA96853.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 589

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 15/192 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV------EDVYDEIN 576
            T + SAT PG  +    + +   + ++    V     IR    Q+      E +   + 
Sbjct: 183 QTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRIME 242

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +    G  +++ V TK    +L + L  R   V  ++ ++    R   +  L+ GK D+L
Sbjct: 243 VEVFDG--MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDIL 300

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  +++  GLD+     V   D           S +  IGR  R       IL+     K
Sbjct: 301 VATDVVARGLDVERVSHVINYD-----IPYDSESYVHRIGRTGRAGRQGDAILFISHREK 355

Query: 696 SIQLAIDETTRR 707
            +  +I++TT++
Sbjct: 356 RLLFSIEKTTKQ 367


>gi|195328469|ref|XP_002030937.1| GM24308 [Drosophila sechellia]
 gi|194119880|gb|EDW41923.1| GM24308 [Drosophila sechellia]
          Length = 592

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 80/214 (37%), Gaps = 23/214 (10%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           +    +QGL+  +L+ V +K  A+ L E L    I V  +H+E    +R   +R  R G 
Sbjct: 357 MRDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAEKSHHQRDNCVRAFREGS 416

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
             VL+   L+  G+D     LV   D     F  +  S I  IGR  R       I +  
Sbjct: 417 IWVLICTELMGRGIDFKGVNLVINYD-----FPPTTISYIHRIGRTGRAGRPGRAITFFT 471

Query: 692 TITKSIQLAID---------------ETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPI 736
               S   +I                +  + R+ + +   K  ++ + +  KI       
Sbjct: 472 QEDTSNLRSIALIIKNSGCTVPEYMLQMKKVRKSEAKMRAKKPLDREDISTKIRPETKGD 531

Query: 737 LLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQ 770
           +   +          ++  ++K  +  LK+ +K+
Sbjct: 532 VKHKSVKLKKVEKTDKILKNRKGNEKDLKTKQKK 565


>gi|149699348|ref|XP_001501033.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19B isoform 2
           [Equus caballus]
          Length = 448

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 238 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNRDEKFQ 291

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 292 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 351

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 352 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 410

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 411 MVDSKHSMNIL----NR---IQEHFNKK 431


>gi|199561314|ref|NP_001013216.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Rattus norvegicus]
          Length = 734

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 39/256 (15%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 317 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 376

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 377 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 435

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 436 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICVCFYQ 490

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 491 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 537

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 538 AVDFFRPSAQRLIEEK 553


>gi|109129181|ref|XP_001107827.1| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 6 [Macaca
           mulatta]
          Length = 440

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 230 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 283

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 284 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 343

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 344 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 402

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 403 MVDSKHSMNIL----NR---IQEHFNKK 423


>gi|294142025|ref|YP_003558003.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293328494|dbj|BAJ03225.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 427

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 11/198 (5%)

Query: 521 LRPTTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINL 577
               T++ SAT     + L Q      +QI +         ++ R      +     +  
Sbjct: 196 KTRQTLLFSATFDESIYGLSQSLLRDPKQIEVGERNAAAVEIDQRVYAVDSDRKLALVTH 255

Query: 578 AAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             + G   ++L+    K  A+ L   L +  I  +  H ++    R ++++  + G+  V
Sbjct: 256 LIESGNLQQVLIFSRKKLAADKLAANLTKAGISAQAFHGDLSQGAREKVLQGFKDGEVRV 315

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   G+DI +   V   +             +  IGR  R  N    I    +  
Sbjct: 316 LVATDVAARGIDIIDLNYVINYE-----LPYKAEDYVHRIGRTGRAGNKGLAITLLCSED 370

Query: 695 KSIQLAIDETTRRREKQL 712
           + +   ++    +R  Q 
Sbjct: 371 EHLLEEVEVVLDKRLPQQ 388


>gi|195050593|ref|XP_001992926.1| GH13374 [Drosophila grimshawi]
 gi|193899985|gb|EDV98851.1| GH13374 [Drosophila grimshawi]
          Length = 459

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 75/226 (33%), Gaps = 37/226 (16%)

Query: 490 DFHRKATLA--EYGFRL----PSCMDNRPLRFEEWNCLRPTTIVVSAT-PG--------- 533
           D      L   E    L       +D+  L+        P  ++ SAT P          
Sbjct: 197 DMSHCKILVLDEADKLLSLDFQGMLDHVILKLP----KDPQILLFSATFPLTVKNFMEKH 252

Query: 534 ---SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVL 590
               +E+   + + ++ + +    V    ++           + +    Q    I +   
Sbjct: 253 LREPYEINLMEELTLKGVTQYYAFVQERQKVH--------CLNTLFSKLQINQSI-IFCN 303

Query: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
           + +  E L + + E      Y+H+++    R  +  D R G    LV  +L   G+D+  
Sbjct: 304 STQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQA 363

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
             +V   D     F R   + +  IGR+ R  +  + +   T    
Sbjct: 364 VNVVINFD-----FPRMAETYLHRIGRSGRFGHLGIAINLITYEDR 404


>gi|167756706|ref|ZP_02428833.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402]
 gi|237732712|ref|ZP_04563193.1| helicase [Mollicutes bacterium D7]
 gi|167702881|gb|EDS17460.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402]
 gi|229384207|gb|EEO34298.1| helicase [Coprobacillus sp. D7]
          Length = 535

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 97/291 (33%), Gaps = 51/291 (17%)

Query: 524 TTIVVSAT---------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE 574
            TI+ SAT                     ++ +    T +     E++  + + E +   
Sbjct: 180 QTILFSATMPAGIKKIAQNYMHDNFEHVAVLSKQTTATSVKQFYYEVK-QKDRFEAMCRL 238

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I+         ++   TKR  +++TE + + N  V  MH ++    R+  +R  + G  +
Sbjct: 239 ID--VANVQTGIIFCRTKRSVDEVTEQMQQANYNVEAMHGDLSQNHRMNTLRKFKKGTIN 296

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
            L+  ++   G+D+     V   +       +   S +  IGR  R           T  
Sbjct: 297 FLIATDVAARGIDVENVTHVINYE-----LPQDIESYVHRIGRTGRADKEGQAYSIITP- 350

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
                        REK      +  +   S+ +  +  +  I      T    ++ Q L+
Sbjct: 351 -------------REKGFLRQIE-RVTKSSITKATIPTLQEISEAKIGTLVSKVEDQILA 396

Query: 755 LSKKKGKAHLKSLRKQMHLAADNLNFEEAA--------RI-----RDEIKR 792
            + KK K  +  +   M       +F  AA        ++     RD I+ 
Sbjct: 397 GNHKKFKQLVNEIDPTMLA-----DF-TAALMYMTFQEQLGYDYKRDTIQE 441


>gi|150016695|ref|YP_001308949.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903160|gb|ABR33993.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 480

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 78/190 (41%), Gaps = 13/190 (6%)

Query: 521 LRPTTIVVSATPGSWELE----QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            +  T++ SAT    E++    +     V+  I    L++  ++     T  E+  +++N
Sbjct: 175 KKKVTMLFSAT-IPEEIKVLCDKYMNKPVDISINNQKLINENIDHNLYYTNYEEKIEKLN 233

Query: 577 LA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                ++   +++   TK   + + ++L  +   V  +H  +   ER+ I+   RLG F 
Sbjct: 234 DILITEKPETVVIFAKTKENVDTVFQWLKSKGYSVNRIHGGMLQKERLSIMDGFRLGDFR 293

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTI 693
           +LV  +L   G+D+     V   D   E     K + +  IGR  R     K I +    
Sbjct: 294 ILVSTDLASRGIDVKGITHVINYDLPVE-----KEAYVHRIGRTGRAGEKGKAISFCVNE 348

Query: 694 TKSIQLAIDE 703
              +   I+E
Sbjct: 349 KDKLLSEIEE 358


>gi|68474769|ref|XP_718592.1| hypothetical protein CaO19.10024 [Candida albicans SC5314]
 gi|68474936|ref|XP_718509.1| hypothetical protein CaO19.2488 [Candida albicans SC5314]
 gi|74627388|sp|Q5A9Z6|FAL1_CANAL RecName: Full=ATP-dependent RNA helicase FAL1
 gi|46440277|gb|EAK99585.1| hypothetical protein CaO19.2488 [Candida albicans SC5314]
 gi|46440366|gb|EAK99673.1| hypothetical protein CaO19.10024 [Candida albicans SC5314]
          Length = 399

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 10/126 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK     L + + ++N  V  MH ++K  ER  I+ D R
Sbjct: 258 DLYDNLTIT-----QAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VL+  ++   G+D+ +  LV   D         K + I  IGR+ R       + 
Sbjct: 313 RGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTDKENYIHRIGRSGRFGRKGTAIN 367

Query: 690 ADTITK 695
             T   
Sbjct: 368 LITKDD 373


>gi|110637075|ref|YP_677282.1| ATP-independent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110279756|gb|ABG57942.1| ATP-independent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
          Length = 446

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 8/166 (4%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
               I+ SAT      +         +   TG       +++  +  +D +D +     Q
Sbjct: 167 IKKRILTSATQAIKIPDFTGMQSPVTLNYITGQASGL-SVKTVLSDTKDKFDTLLRLLCQ 225

Query: 582 --GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
                +++    +   E++  YL E  I     H  ++   R   +   R G  +VLV  
Sbjct: 226 IGNESVIVFCNQRDEVENVCAYLTEHGIINNNFHGGLEQRYRESTLTKFRNGSTNVLVTT 285

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           +L   GLDIP+   V               +     GR AR  ++ 
Sbjct: 286 DLAARGLDIPDVKHVI-----HYQMPHKIDAFTHRNGRTARMGSTG 326


>gi|145538955|ref|XP_001455172.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124422971|emb|CAK87775.1| unnamed protein product [Paramecium tetraurelia]
          Length = 431

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 93/251 (37%), Gaps = 20/251 (7%)

Query: 510 NRPLRFEEWNCLR--------PTTIVVSATPGS----WELEQCQGIIVEQIIRPTGLVDP 557
           +R L  + W+ ++        P   +VSAT  +     + E      VE I  P   V  
Sbjct: 162 DRLLEPQIWDDIKQVYEQCESPQIALVSATLNNVTQQLKDEFANVKFVECINNPEQKVSE 221

Query: 558 PVEIRSAR--TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
            ++ +       V+D Y    +   +G   ++   T R   +L E L    I+   +HS 
Sbjct: 222 TIKHKFVLMPDLVKDYYFIHLMKKLEGASTIVFAPTCRKCHELNELLNHFEIKSTCLHSM 281

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +   ERI  +R  R  K  VLV  ++   GLDIP    V   +  K      +   I  +
Sbjct: 282 LPQHERISNLRAYRSQKTQVLVATDVASRGLDIPNVKFVINWNVPKV-----EADYIHRV 336

Query: 676 -GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVID 734
                       I           LAI+     R ++++ N++  ++  +   K ++ I 
Sbjct: 337 GRTGRAGRRGTAITMMTQFDVERILAIENLINLRLEEIKFNEEKVLSNMTEVTKAIKTIK 396

Query: 735 PILLEDAATTN 745
             + +D  T  
Sbjct: 397 IKMQQDGTTEK 407


>gi|22135801|gb|AAM91087.1| At5g26740 [Arabidopsis thaliana]
          Length = 748

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 9/137 (6%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++     +G + ++   TKR A++++  L   +I    +H ++   +R   +   R 
Sbjct: 340 ILSDLITVYAKGGKNIVFTQTKRDADEVSLALS-NSIATEALHGDISQHQRERTLNAFRQ 398

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           GKF VLV  ++   GLDIP   LV               + +   GR  R         A
Sbjct: 399 GKFTVLVATDVASRGLDIPNVDLVI-----HYELPNDPETFVHRSGRTGRAGKEGS---A 450

Query: 691 DTITKSIQLAIDETTRR 707
             +  S Q     +  R
Sbjct: 451 ILMHTSSQKRTVRSLER 467


>gi|15839285|ref|NP_299973.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa 9a5c]
 gi|9107937|gb|AAF85493.1|AE004075_8 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
          Length = 544

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 83/244 (34%), Gaps = 29/244 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+ +  ++ +    + +         +  R   L   GF      D R +   
Sbjct: 142 TPGRLIDYLKQHEVVSLRVCEICV-------LDEADRMFDL---GFI----KDIRFILRR 187

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEIRSARTQVE 569
                   T++ SAT     LE     + E            T  V   +   +   ++ 
Sbjct: 188 LPERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETETVTTTRVRQRIYFPAEEEKIP 247

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   ++    +G+R ++ V TK   E +   L E   RV  +  +V   +R  ++   +
Sbjct: 248 LLLGLLS--RSEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQ 305

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G+ ++LV  ++   GL I     V   D             +  IGR AR       I 
Sbjct: 306 KGQLEILVATDVAARGLHIDGVNYVYNYD-----LPFDAEDYVHRIGRTARLGADGDAIS 360

Query: 689 YADT 692
           +A  
Sbjct: 361 FACE 364


>gi|32363421|sp|Q9PA24|RHLB_XYLFA RecName: Full=ATP-dependent RNA helicase rhlB
          Length = 543

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 83/244 (34%), Gaps = 29/244 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +Y+ +  ++ +    + +         +  R   L   GF      D R +   
Sbjct: 141 TPGRLIDYLKQHEVVSLRVCEICV-------LDEADRMFDL---GFI----KDIRFILRR 186

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEIRSARTQVE 569
                   T++ SAT     LE     + E            T  V   +   +   ++ 
Sbjct: 187 LPERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETETVTTTRVRQRIYFPAEEEKIP 246

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   ++    +G+R ++ V TK   E +   L E   RV  +  +V   +R  ++   +
Sbjct: 247 LLLGLLS--RSEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQ 304

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            G+ ++LV  ++   GL I     V   D             +  IGR AR       I 
Sbjct: 305 KGQLEILVATDVAARGLHIDGVNYVYNYD-----LPFDAEDYVHRIGRTARLGADGDAIS 359

Query: 689 YADT 692
           +A  
Sbjct: 360 FACE 363


>gi|330997890|ref|ZP_08321724.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329569494|gb|EGG51264.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 483

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R+++   +K   +D+   L     +V  MHS+++  ER E++   +  + DVLV  +++
Sbjct: 245 HRVIVFASSKLKVKDMAIALGRAGFKVGAMHSDLEQQERDEVMYKFKAQQIDVLVATDIV 304

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
             G+DI +  LV   D             +  IGR AR  N    +   +     + A
Sbjct: 305 ARGIDIDDIQLVINFDV-----PHDAEDYVHRIGRTARANNDGEAITLVSEKDQQRFA 357


>gi|311271292|ref|XP_003133100.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Sus scrofa]
          Length = 738

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 39/256 (15%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 321 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 380

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 381 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 439

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 440 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 494

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 495 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 541

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 542 AVDFFRPSAQRLIEEK 557


>gi|296283706|ref|ZP_06861704.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
          Length = 461

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 73/226 (32%), Gaps = 32/226 (14%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----- 550
            + + GF       +   +  E       T+  SAT     + +    +V Q  R     
Sbjct: 160 QMLDLGFI------HALRKINELTPKTRQTLFFSAT-----MPKAIKDLVSQYCRNPAQV 208

Query: 551 ---PTGLVDPPVEIRSARTQ-------VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTE 600
              P       +E      Q       +E +    +    +  R+L+   TK   + + +
Sbjct: 209 SVTPESTTAERIEQFLFMVQQDEKQSLLELILSGRHEIPGKLERVLVFARTKHGCDRVVK 268

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
            L +  I    +H      +R   + + +  K  VLV  ++   G+DIP    V   +  
Sbjct: 269 KLAQVGIPANAIHGNKSQPQRERALDEFKRAKTPVLVATDVAARGIDIPGVSHVINYE-- 326

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDETT 705
                      +  IGR AR     + I +     +     I +TT
Sbjct: 327 ---LPNVPEQYVHRIGRTARAGADGIAIAFCAEDERQYLKDIRKTT 369


>gi|311743785|ref|ZP_07717591.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272]
 gi|311312915|gb|EFQ82826.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272]
          Length = 470

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 6/110 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+++   TKR A+ + + L +R      +H ++    R + ++  R GK + LV  ++  
Sbjct: 245 RVIIFTRTKRTAQRVADELVDRGFPASPLHGDMAQTAREKALQRFRDGKINTLVATDVAA 304

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
            G+D+     V   +           + +  IGR  R   S + + + D 
Sbjct: 305 RGIDVANISHVINYNC-----PEDDKTYVHRIGRTGRAGASGIAVTFVDW 349


>gi|238878985|gb|EEQ42623.1| eukaryotic initiation factor 4A-12 [Candida albicans WO-1]
          Length = 399

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 10/126 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK     L + + ++N  V  MH ++K  ER  I+ D R
Sbjct: 258 DLYDNLTIT-----QAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VL+  ++   G+D+ +  LV   D         K + I  IGR+ R       + 
Sbjct: 313 RGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTDKENYIHRIGRSGRFGRKGTAIN 367

Query: 690 ADTITK 695
             T   
Sbjct: 368 LITKDD 373


>gi|218780301|ref|YP_002431619.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761685|gb|ACL04151.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 430

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 79/235 (33%), Gaps = 21/235 (8%)

Query: 490 DFHRKATLA--------EYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
           D  R   L         + GF LP     + L F         T++ SAT  +       
Sbjct: 140 DLSRVEMLVLDEADQMFDMGF-LPDI--RKILTFLP--RKGRQTLMFSATMPAQIKRLAG 194

Query: 542 GIIVEQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAED 597
            ++   ++   G V P   ++         ++       L +     +L+   TK  A+ 
Sbjct: 195 EVLHNHVLVQIGHVAPADTVKHAFYPVAQHLKTALLLQLLGSTGTESVLVFTRTKYKAKQ 254

Query: 598 LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAIL 657
           L   L +       +   +    R++ +   + GK+ VLV  ++   G+D+     V   
Sbjct: 255 LGNKLTKAGFSSASLQGNLSQSRRVDAMNGFKSGKYQVLVATDIAARGIDVANVSHVINY 314

Query: 658 DADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT--ITKSIQLAIDETTRRREK 710
           D        +    I   GRA R   +   +  D   + +++  A+     +R  
Sbjct: 315 DMPST--PETYMHRIGRTGRAKRRGEAFTFITNDDRQMVRAVNRAVGSNVEQRTI 367


>gi|157374733|ref|YP_001473333.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157317107|gb|ABV36205.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 465

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 64/174 (36%), Gaps = 12/174 (6%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSAR-TQVEDVYD 573
           +  R  T++ SAT    ++ +    +++      I    + +  +  R      ++    
Sbjct: 195 DHKRRQTLMFSATLDHNKINEIAAELLKDPMHVSIGAGNIENLDITQRIYLSDHLDHKEA 254

Query: 574 EINL--AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +N     ++  ++++   T++  + L   L E       +  ++K   R +I+     G
Sbjct: 255 LLNHILKNEKNKQVIIFTATRQDTDRLATKLAEAGFNTASLSGDLKQNARNQIMDQFSRG 314

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             D+LV  ++   GLD+    LV   D  K          +  IGR  R     
Sbjct: 315 LQDILVTTDVASRGLDLLNVSLVINFDMPKF-----AEEYVHRIGRTGRAGAKG 363


>gi|119384480|ref|YP_915536.1| DEAD/DEAH box helicase domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119374247|gb|ABL69840.1| DEAD/DEAH box helicase domain protein [Paracoccus denitrificans
           PD1222]
          Length = 479

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 11/185 (5%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEI-RSARTQVEDVYDEINLAA 579
            T++ SAT      EL         ++ + P G     ++       Q +         +
Sbjct: 247 QTLLFSATMPKLMEELADSYLNDPLRVAVNPPGQAAEKIDQGVHFVNQGDKATLLAEYLS 306

Query: 580 QQ-GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +      ++   TK  +E L + L +   +V  +H      +R   +   R G+  VLV 
Sbjct: 307 KHVDELAIVFGRTKHGSEKLCKLLDKWGFKVAAIHGNKSQGQRERALASFRAGETKVLVA 366

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSI 697
            ++   GLDIP+   V   D           + +  IGR AR   + + I +        
Sbjct: 367 TDVAARGLDIPQVAHVYNYD-----LPNVPENYVHRIGRTARAGRDGRAIAFCSPTEIGE 421

Query: 698 QLAID 702
             AI+
Sbjct: 422 LRAIE 426


>gi|323141176|ref|ZP_08076077.1| putative DEAD-box ATP-dependent RNA helicase CshA
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414319|gb|EFY05137.1| putative DEAD-box ATP-dependent RNA helicase CshA
           [Phascolarctobacterium sp. YIT 12067]
          Length = 418

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 28/177 (15%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ- 581
             T++ SAT             V ++ R        ++I   +  VE +         + 
Sbjct: 177 HQTMLCSATLSEE---------VRKLGRKLTKNCALIDINPDQATVEKIKQVCLKTTDEY 227

Query: 582 -------------GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
                           +++  ++K   ++L ++L  +   V  +H E+   +R  +++  
Sbjct: 228 KNKAVAALIDRLNPYLMIVFCMSKERTKELGDWLGMQGYNVDVLHGEMSPAKRKTVMKAF 287

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           R  K  +LV  +L   GLD+     V   D             +  IGR  R  N  
Sbjct: 288 RDAKIQILVASDLAARGLDVEGVTHVVNYD-----IPHDVDWYVHRIGRTGRAGNEG 339


>gi|312963578|ref|ZP_07778059.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
 gi|311282087|gb|EFQ60687.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
          Length = 628

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 67/193 (34%), Gaps = 11/193 (5%)

Query: 522 RPTTIVVSATPGSWE--LEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
           +   ++ SAT       L        E+I + P       +E R  R         +   
Sbjct: 184 KRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRSLLAHL 243

Query: 579 AQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              G   ++L+   TK  A  L EYL +  +    +H       R + + D + G   +L
Sbjct: 244 ITHGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSVRIL 303

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLDI +   V   +             +  IGR  R   S   I       +
Sbjct: 304 VATDIAARGLDIDQLPHVVNFE-----LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEE 358

Query: 696 SIQLAIDETTRRR 708
            +  +I+  T+++
Sbjct: 359 KLLKSIERMTKQK 371


>gi|260574781|ref|ZP_05842784.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
 gi|259023198|gb|EEW26491.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
          Length = 537

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 60/196 (30%), Gaps = 22/196 (11%)

Query: 524 TTIVVSATPGSWELEQ---------CQGIIVEQIIRPTGLVDPPVEI------RSARTQV 568
            T   SAT    E+E+          +  +  Q      +    ++I      RS   + 
Sbjct: 180 QTFFYSATMAP-EIERITNTFLSNAVKIEVARQATSSETIEQALIQITPTRKDRSFADKR 238

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
             +   I    +     ++    K   + +++ L +       +H ++    R   +   
Sbjct: 239 AVLRALIRAEGEACTNAIIFCNRKMDVDVVSKSLKQHGFNASPIHGDLDQSVRTRTLDGF 298

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVI 687
           R G   +LV  ++   GLDIP    V   D             +  IGR  R     K  
Sbjct: 299 RDGTVHLLVASDVAARGLDIPAVSHVFNFDV-----PSHPEDYVHRIGRTGRAGRKGKAF 353

Query: 688 LYADTITKSIQLAIDE 703
             A         AI+ 
Sbjct: 354 TIATPYDDKYLAAIEH 369


>gi|284033244|ref|YP_003383175.1| DEAD/DEAH box helicase domain-containing protein [Kribbella flavida
           DSM 17836]
 gi|283812537|gb|ADB34376.1| DEAD/DEAH box helicase domain protein [Kribbella flavida DSM 17836]
          Length = 815

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           +V   I  A  +G R+++   TKR A  LT+ L +R  +   +H ++    R   +   R
Sbjct: 233 EVVARILQAEDRG-RVMIFCRTKREAGRLTDDLADRGFKAAAIHGDLNQQARERALTRFR 291

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
             K DVL+  ++   G+D+     V             + + I  IGR  R   S + + 
Sbjct: 292 GDKIDVLICTDVAARGIDVEGVTHVIN-----NTCPEDEKAYIHRIGRTGRAGASGIAVT 346

Query: 689 YADTITKSIQLAID 702
           + D    +    I+
Sbjct: 347 FVDWADVTRWKTIN 360


>gi|332834199|ref|XP_003312636.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
           troglodytes]
          Length = 643

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 87/257 (33%), Gaps = 34/257 (13%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 320 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 379

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 380 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 493

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                         R   QL +  +K  I  + V   +   +D +  +            
Sbjct: 494 P-------------RERGQLRYVEQKAGITFKRVG--VPSTMDLVKSKSMDAIRSLASVS 538

Query: 752 QLSLS--KKKGKAHLKS 766
             ++   +   +  ++ 
Sbjct: 539 YAAVDFFRPSAQRLIEE 555


>gi|332218198|ref|XP_003258246.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Nomascus
           leucogenys]
          Length = 643

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 39/256 (15%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 320 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 379

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 380 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 493

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 494 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 540

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 541 AVDFFRPSAQRLIEEK 556


>gi|296220525|ref|XP_002756346.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 3 [Callithrix
           jacchus]
          Length = 643

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 39/256 (15%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 320 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 379

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 380 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 493

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 494 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 540

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 541 AVDFFRPSAQRLIEEK 556


>gi|260434308|ref|ZP_05788278.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
 gi|260412182|gb|EEX05478.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
          Length = 607

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 87/263 (33%), Gaps = 31/263 (11%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             ++ SAT         +  +    E  IR        +  RS    +    + +     
Sbjct: 233 QVVLFSATMPPEIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQRVLD 292

Query: 581 Q--GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
              G  +++   TK +   + E L     +V  ++ +V   +R   +  LR G  D+LV 
Sbjct: 293 ACGGEGVIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVA 352

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+   GLV   D   +       + +  IGR  R   +   +   T      
Sbjct: 353 TDVAARGLDVERIGLVINYDMPFD-----SEAYVHRIGRTGRAGRTGEAVLFVTP----- 402

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKI--MEVIDPILLEDAATTNISIDAQQLSLS 756
                    RE++   N +     ++  + I  MEV     +       +       + S
Sbjct: 403 ---------RERRFIRNLE-----RATGQPIEAMEVPGNTAINQGRLDRLRKRLSDAAQS 448

Query: 757 KKKGKAHLKSLRKQMHLAADNLN 779
           ++        L++ M   A  L 
Sbjct: 449 QRPDADEAALLQELMQRVATELE 471


>gi|194374303|dbj|BAG57047.1| unnamed protein product [Homo sapiens]
          Length = 643

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 39/256 (15%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 320 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 379

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 380 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 493

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 494 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 540

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 541 AVDFFRPSAQRLIEEK 556


>gi|322795050|gb|EFZ17898.1| hypothetical protein SINV_07122 [Solenopsis invicta]
          Length = 725

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 98/260 (37%), Gaps = 28/260 (10%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIR-SARTQVE 569
                TI+ SAT  + E++    + +++ I+            L    + IR       E
Sbjct: 335 SRTRQTILFSAT-MTEEVKDLAAVSLDKPIKIFVDSNQDVAFNLRQEFIRIRKEREGDRE 393

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   +          ++ V TK+ A  L   L    ++V  +H  +   +R+E +R  +
Sbjct: 394 AILAALVCRTFHDH-AMVFVQTKKQAHRLHILLGLLGVKVGELHGNLTQPQRLENLRKFK 452

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
             + D+L+  ++   GLDI     V            +    I  +GR AR     V + 
Sbjct: 453 DEEIDILLATDVAARGLDISGVKTVINF-----VMPATLQHYIHRVGRTARAGRGGVSVS 507

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
            A    +S+   +        KQ ++  K+ I P  + EK  + +    LE      +  
Sbjct: 508 LAGEQERSLVKEV-------IKQAKNQVKNRIIPPDIIEKYNKKLQS--LESDVEKILQE 558

Query: 749 DAQQLSLSKKKGKA-HLKSL 767
           +  +  L+K + +A  ++ L
Sbjct: 559 EKSEKELAKVENEANRVEKL 578


>gi|317010528|gb|ADU84275.1| ATP-dependent RNA helicase [Helicobacter pylori SouthAfrica7]
          Length = 494

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 34/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++        +  H  +P++  +   D      + + GF     +D+    F+
Sbjct: 146 TPGRLLDHLKN------ERIHKFVPKVVVLDESD-----EMLDMGF-----LDDIEEIFD 189

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVY 572
                    ++ SAT     +++    I+E  I+    P+ + +  +  R       +  
Sbjct: 190 YLPSEA-QILLFSAT-MPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERS 247

Query: 573 DEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + I      Q   + ++   TK+ A++L ++L  +N +   +H ++   +R   I   + 
Sbjct: 248 EAIMRLLDTQAPEKSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKK 307

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              DVLV  ++   GLDI     V            +  S I  IGR  R     + +  
Sbjct: 308 NDADVLVATDVASRGLDISGVSHVFNYH-----LPLNTESYIHRIGRTGRAGKKGMAITL 362

Query: 691 DTITK-----SIQLAID 702
            T  +      +Q  ID
Sbjct: 363 VTPLEYKELLRMQKEID 379


>gi|261212229|ref|ZP_05926515.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
 gi|260838837|gb|EEX65488.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
          Length = 421

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 89/257 (34%), Gaps = 35/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L EY        +D        I  +   +  R     + GF  P+   +R     
Sbjct: 132 TPGRLLEY--------IDAERFDCRAIEWLILDEADRM---LDMGFG-PTV--DRLSTEC 177

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEI 575
            W   R  T++ SAT    E    +G   + +  P     +PP   R   +Q     D++
Sbjct: 178 RW---RKQTLLFSAT---LEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDM 231

Query: 576 NLAAQ--------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
               +        Q  R ++ + T+    DL   L +  I   ++  E+    R   I  
Sbjct: 232 PHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITR 291

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV- 686
            R G  ++L+  ++   G+D+P+   V   D       RS    +  IGR  R     + 
Sbjct: 292 FREGDVNILLATDVAARGIDVPDISHVINFD-----LPRSADVYLHRIGRTGRAGKKGIA 346

Query: 687 ILYADTITKSIQLAIDE 703
           I   +   + +   ++ 
Sbjct: 347 ISLVEAHDQPMMARVER 363


>gi|158259303|dbj|BAF85610.1| unnamed protein product [Homo sapiens]
          Length = 820

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      RP   V+  V + S   
Sbjct: 591 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGRPHERVEQKVFLMSESE 650

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 651 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 708

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 709 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 763

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 764 AITFLTKEDSAVFYELKQAILES 786


>gi|16716475|ref|NP_444413.1| ATP-dependent RNA helicase DDX50 [Mus musculus]
 gi|55976576|sp|Q99MJ9|DDX50_MOUSE RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
           box protein 50; AltName: Full=Gu-beta; AltName:
           Full=Nucleolar protein Gu2
 gi|13540306|gb|AAK29403.1|AF334104_1 nucleolar protein GU2 [Mus musculus]
          Length = 734

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 39/256 (15%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 317 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 376

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 377 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 435

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 436 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICVCFYQ 490

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 491 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 537

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 538 AVDFFRPSAQRLIEEK 553


>gi|325522216|gb|EGD00856.1| DEAD/DEAH box helicase [Burkholderia sp. TJI49]
          Length = 480

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 10/144 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V T+   + L   L E    V  +H +     R+  +   +  +  +LV  ++   
Sbjct: 247 ALVFVKTRSGVDYLAARLDEAGYAVDTIHGDKPQPARLRALERFKQREVSMLVATDVAAR 306

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLDI +  LV  +D             +  IGR  R   S V +      ++ QLA  ET
Sbjct: 307 GLDIDDLPLVINVDLPIV-----AQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIET 361

Query: 705 TRR----REKQLEHNKKHNINPQS 724
             R    RE++     +H   PQ+
Sbjct: 362 LIRQTLPREEEPGFEAEHR-VPQT 384


>gi|258645792|ref|ZP_05733261.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
           DSM 15470]
 gi|260403163|gb|EEW96710.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
           DSM 15470]
          Length = 510

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 106/284 (37%), Gaps = 38/284 (13%)

Query: 417 LEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRN--PGEPPPTLFEYIPEDSLLFVD 474
            E  RL Q   Y           Q IE   R L  +       P  L +++   +   +D
Sbjct: 89  EEMNRLAQ---YLPIHALPIYGGQDIERQFRALRKKPNIIVATPGRLMDHMKRGT---ID 142

Query: 475 ESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PG 533
            SHV   QI  +  GD      + + GF      D R +           T+  SAT P 
Sbjct: 143 LSHV---QILVLDEGD-----EMVDMGFI----DDIRTILAGMPEER--QTMFFSATMPA 188

Query: 534 S-WELEQC--QGIIVEQIIRPTGLVDPP----VEIRSARTQVEDVYDEINLAAQQGLRIL 586
              EL +   +  ++ +I   T  +D      +E+     Q  D    +    +     +
Sbjct: 189 PIRELAESFLRDPVLVKIKAATVTIDLVEQEYIELPDM--QKFDCLCRLLD-MENPELAI 245

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           + V TKR A+++TE L +R      +H ++   +R  ++R  + G  D+LV  ++   GL
Sbjct: 246 VFVRTKRRADEVTEALKKRGYMAEGLHGDLSQQKRDAVVRQFKEGTIDILVATDVAARGL 305

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           DI     V   D       +   + +  +GR  R   + + +  
Sbjct: 306 DISGVTHVYNFD-----MPQDSETYVHRVGRTGRAGQTGLAMTF 344


>gi|288942738|ref|YP_003444978.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288898110|gb|ADC63946.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 662

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+ V TK    +L + L         ++ ++    R   +  L+ G+ DVLV  ++   G
Sbjct: 252 LIFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLDVLVATDVAARG 311

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDET 704
           LD+     V   D          ++ +  IGR  R   +   IL  +   + +  +I+  
Sbjct: 312 LDVERISHVVNYD-----IPTDPSAYVHRIGRTGRAGRAGRAILLVEPRERGLLKSIERV 366

Query: 705 TRR 707
            RR
Sbjct: 367 IRR 369


>gi|294893294|ref|XP_002774400.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239879793|gb|EER06216.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 535

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+   TKR  + LT+ L  +      +HS+ +  ER  +    R G   +LV  NL+ 
Sbjct: 400 KALIFCNTKREVDQLTQLLRSQGYNAVCIHSDKEQSEREWVFAQYRDGDVRLLVATNLMG 459

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
            G+DI     V   D       ++    +  IGR AR      
Sbjct: 460 RGVDIKNIQFVINYD-----MPQNVEEYVHRIGRTARAGAHGT 497


>gi|257056836|ref|YP_003134668.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
 gi|256586708|gb|ACU97841.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
          Length = 570

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +     ++   T+   + LTE +  R  R   +H  +   +R  ++  LR G  D++V 
Sbjct: 265 IETPEATVVFCRTREEVDRLTETMNGRGYRAEALHGGMDQHQRNRVVGRLRTGTADLVVA 324

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI +   V   D        +    +  IGR  R       I  A+     +
Sbjct: 325 TDVAARGLDIDQLTHVVNYDV-----PSAPEVYVHRIGRVGRAGRQGSAITLAEPGEHRM 379

Query: 698 QLAIDETT 705
             AI+  T
Sbjct: 380 IKAIERVT 387


>gi|255572303|ref|XP_002527090.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223533513|gb|EEF35253.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 601

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 99/265 (37%), Gaps = 30/265 (11%)

Query: 509 DNRPLRFEEWNCLRPTTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVD-PPVE 560
            NR  + +    L   TI+V+AT           E +    +    + +         ++
Sbjct: 301 KNRASKPDG---LGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIK 357

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +  +  ++E +   +  +  +G R+++   T   +  +  +L E  I     H EV   +
Sbjct: 358 LSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLAENQISTVNYHGEVPAEQ 417

Query: 621 RIEIIRDLRL--GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           R+E ++  +   G    LV  +L   GLD+ +   V + D     F  +    +   GR 
Sbjct: 418 RVENLQKFKSDDGDCPTLVCTDLAARGLDL-DVDHVVMFD-----FPLNSIDYLHRTGRT 471

Query: 679 ARNVNSKVILYADTITKSIQLA-IDETTRRREKQLE----HNKKHNINPQSVKEKIMEVI 733
           AR          D + + I  A I E   ++ K ++     NK + I  +S         
Sbjct: 472 ARMGAK------DNVRRDIARAQITEQKGKKAKLIKLSSQKNKINTIADKSSTNSTKAAS 525

Query: 734 DPILLEDAATTNISIDAQQLSLSKK 758
                  A+T   S+ A +++ + K
Sbjct: 526 SVNKSRKASTPAKSVKAVKVAKTLK 550


>gi|212721126|ref|NP_001132058.1| hypothetical protein LOC100193470 [Zea mays]
 gi|194693318|gb|ACF80743.1| unknown [Zea mays]
          Length = 506

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 58/150 (38%), Gaps = 11/150 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            V  +I      G R ++   TK  A +L+  ++      R +H +V   +R  I+   R
Sbjct: 363 QVIPDIIRCYSHGGRTIIFTETKDSASELSGLIH----GSRALHGDVAQAQREVILAGFR 418

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GKF VLV  N+   GLDI +  L+   +  ++       + I   GR  R  N+ V + 
Sbjct: 419 SGKFQVLVATNVAARGLDINDVQLIIQCEPPRDV-----EAYIHRSGRTGRAGNTGVAVI 473

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHN 719
                      +  T  R    +   K H 
Sbjct: 474 YCRCHYVYCSPLSTTWHRLYSSML--KAHG 501


>gi|195129025|ref|XP_002008959.1| GI13776 [Drosophila mojavensis]
 gi|193920568|gb|EDW19435.1| GI13776 [Drosophila mojavensis]
          Length = 448

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 71/189 (37%), Gaps = 11/189 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVED------VYDEIN 576
             +  SAT     ++  + I+ E  IIR     +    I+      ++          I 
Sbjct: 238 QMLFFSATYDKEVMDFARLIVPEPTIIRLMREEESLDNIKQYYVNCKNEEGKYNAIQNIY 297

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G   ++   T++ A  L   +      V  +  ++   +R+ ++   R G+  VL
Sbjct: 298 GCISIGQ-AIIFCHTRKTAAWLASKMTTDGHSVAVLSGDLTVEQRLAVLDRFRSGQEKVL 356

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKT-SLIQTIGRAARNVNSKVILYADTITK 695
           +  N+L  G+DI +  +V   D   +    +   + +  IGR  R   S + +      K
Sbjct: 357 ITTNVLSRGIDIEQVTIVVNFDLPVDLRGNADCETYLHRIGRTGRFGKSGIAINLIDGEK 416

Query: 696 SIQ--LAID 702
           S+    AI+
Sbjct: 417 SMSVCRAIE 425


>gi|148825298|ref|YP_001290051.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittEE]
 gi|148715458|gb|ABQ97668.1| ATP-dependent RNA helicase [Haemophilus influenzae PittEE]
          Length = 439

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 88/260 (33%), Gaps = 34/260 (13%)

Query: 470 LLFVDESHVTIPQISGMYRG-----DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +L  DE+   +    G            RK TL      L S      L  +    L   
Sbjct: 153 MLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL------LFSATLEGELLVDFAERLLND 206

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + V A P   E ++                       S   +++ +   I    ++  R
Sbjct: 207 PVKVDAEPSRRERKKINQWYYHAD--------------SNEHKIKLLARFIE--TEEVTR 250

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++   
Sbjct: 251 GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+DI +   V   D        S  + +  IGR AR       +            + + 
Sbjct: 311 GIDIDDVSHVMNFD-----LPYSADTYLHRIGRTARAGKKGTAVSFVEAHD--YKLLGKI 363

Query: 705 TRRREKQLEHNKKHNINPQS 724
            R  E+ L+      + P++
Sbjct: 364 KRYTEEILKARILAGLEPRT 383


>gi|73957026|ref|XP_850645.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-As) box polypeptide 19
           isoform 2 isoform 1 [Canis familiaris]
          Length = 448

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 238 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNRDEKFQ 291

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 292 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 351

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 352 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 410

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 411 MVDSKHSMNIL----NR---IQEHFNKK 431


>gi|225420023|ref|ZP_03762326.1| hypothetical protein CLOSTASPAR_06366 [Clostridium asparagiforme
           DSM 15981]
 gi|225041279|gb|EEG51525.1| hypothetical protein CLOSTASPAR_06366 [Clostridium asparagiforme
           DSM 15981]
          Length = 552

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 63/192 (32%), Gaps = 28/192 (14%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG 582
             T+  SAT      +    I+              +EI  A T VE +   +    +  
Sbjct: 181 KQTLFFSATMPPDIAKLAAKILKN---------PEKIEITPAATTVEAIEQYLYFVDKGN 231

Query: 583 LR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
            +               L+   TK  A+ +   L + N+  + +H +     R   + D 
Sbjct: 232 KKDLLLHILKTKDLDSTLVFTRTKHGADRVVRQLSKSNVVAQAIHGDKSQGARQRALNDF 291

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +  K  VLV  ++   G+DI E   V   D           + +  IGR  R     + +
Sbjct: 292 KDKKLRVLVATDIAARGIDIDELACVVNYD-----LPDVPETYVHRIGRTGRAGLEGIAI 346

Query: 689 YADTITKSIQLA 700
                 +  QLA
Sbjct: 347 SFCDFDEKAQLA 358


>gi|167625497|ref|YP_001675791.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167355519|gb|ABZ78132.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 492

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 13/196 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSAR-TQ-VEDVYDE 574
           +   ++ SAT      +  +G++   VE  + P       V+  I      Q V  + + 
Sbjct: 178 KRQNLMFSATFSDDIRQLAKGLVNNPVEISVTPRNATANTVKQWICPVDHGQKVAVLIEL 237

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I        ++L+   TK  A  L + L  + I    +H       R + + D + G   
Sbjct: 238 IKQ--NDWQQVLVFSRTKHGANRLAKNLEAKGITAAAIHGNKSQGARTKALADFKSGAVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI- 693
           VLV  ++   GLDI +   V   D             I   GRA  + ++  ++ ++ I 
Sbjct: 296 VLVATDIAARGLDIDQLPQVVNFDLP--NVPEDYVHRIGRTGRAGASGHAVSLVSSEEIK 353

Query: 694 -TKSIQLAIDETTRRR 708
             + I+L I +   RR
Sbjct: 354 LLRDIELLIKQNLERR 369


>gi|332218196|ref|XP_003258245.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Nomascus
           leucogenys]
          Length = 737

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 39/256 (15%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 320 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 379

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 380 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 493

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 494 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 540

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 541 AVDFFRPSAQRLIEEK 556


>gi|195970701|gb|ACG60739.1| probable DEAD-box RNA helicase [Streptomyces flavoviridis]
          Length = 498

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 17/157 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D +      A +  R+++ + TK   + LT  L    +R   +H      +R   +   +
Sbjct: 296 DKHAATTEIAARDGRVIMFLDTKHAVDRLTRDLLNSGVRAAALHGGKSQPQRTRTLTQFK 355

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ +    LV  +D             +   GR AR   S  ++ 
Sbjct: 356 TGHVTVLVATNVAARGIHVDNLDLVVNVDP-----PTDHKDYLHRGGRTARAGESGSVVT 410

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
             T ++          RR   +L  N    I PQ+ +
Sbjct: 411 LVTPSQ----------RRGMVRLMSNA--GIRPQTTQ 435


>gi|13129006|ref|NP_076950.1| ATP-dependent RNA helicase DDX50 [Homo sapiens]
 gi|297686803|ref|XP_002820928.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Pongo abelii]
 gi|55976580|sp|Q9BQ39|DDX50_HUMAN RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
           box protein 50; AltName: Full=Gu-beta; AltName:
           Full=Nucleolar protein Gu2
 gi|13540304|gb|AAK29402.1|AF334103_1 nucleolar protein GU2 [Homo sapiens]
 gi|12653021|gb|AAH00272.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
 gi|55664207|emb|CAH72376.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
 gi|119574689|gb|EAW54304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
 gi|123983644|gb|ABM83473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
 gi|123998165|gb|ABM86684.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
          Length = 737

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 39/256 (15%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 320 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 379

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 380 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 493

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 494 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 540

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 541 AVDFFRPSAQRLIEEK 556


>gi|297824637|ref|XP_002880201.1| hypothetical protein ARALYDRAFT_483719 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326040|gb|EFH56460.1| hypothetical protein ARALYDRAFT_483719 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 521

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  D R G    LV  +L   G
Sbjct: 388 IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRG 447

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +DI    +V   D     F R+  S +  +GR+ R  +  + +   T     ++
Sbjct: 448 IDIQAVNVVINFD-----FPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKM 496


>gi|294337058|emb|CAX65669.1| vasa-like protein [Isodiametra pulchra pulchra]
          Length = 574

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 6/114 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++ V  K+  + L   L +   +   +H + +  ER E +R  + G+ ++LV   + 
Sbjct: 371 QKSIVFVEMKKRCDFLAVQLCQAGYQSTSIHGDREQREREEALRQFKSGQCNILVATAVA 430

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITK 695
             GLDIP+   V   D  K     +        GR  R       I   D    
Sbjct: 431 ARGLDIPKVMFVVNFDMPK-----TIEEFTHRCGRTGRVGFKGDAITLLDPTND 479


>gi|125559398|gb|EAZ04934.1| hypothetical protein OsI_27114 [Oryza sativa Indica Group]
          Length = 540

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A++L + L   ++R   +H+++   +R + + +LR G+  VL+   ++  
Sbjct: 388 VLIFVQSKERAKELYKELAFDDVRADVIHADLDEEQRQDAVDNLRAGQTWVLIATEVIAR 447

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
           G+D      V   D     F  S ++ I  IGR+ R   S   I +     K     I
Sbjct: 448 GMDFKGVNCVINYD-----FPESASAYIHRIGRSGRAGRSGEAITFFTEEDKPFLRNI 500


>gi|109089503|ref|XP_001111043.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Macaca mulatta]
 gi|296220521|ref|XP_002756344.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Callithrix
           jacchus]
          Length = 737

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 39/256 (15%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 320 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 379

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 380 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 493

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 494 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 540

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 541 AVDFFRPSAQRLIEEK 556


>gi|328848613|gb|EGF97819.1| hypothetical protein MELLADRAFT_51140 [Melampsora larici-populina
           98AG31]
          Length = 602

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 74/206 (35%), Gaps = 17/206 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGL- 554
            + + GF      D R +    +   +  T++ SAT         +  +V+ ++   G  
Sbjct: 333 RMVDMGFE----EDMRNIM--SFFKRQRQTLLFSATMPKTIRNFAENSLVKPVVVNVGRA 386

Query: 555 ----VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + Q   +   +    +    +++    K   +D+ EYL  + +   
Sbjct: 387 GAANLDVIQEVEYVK-QEAKMVYLLECLQKTPPPVIIFSDNKNEVDDIQEYLLLKGVEAV 445

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER   I+  + GK DV+V   +  +GLD  E   V       E       +
Sbjct: 446 AIHGSKTQEEREYAIKSFKSGKKDVMVASGVASKGLDFAEIQHVINFTMPGE-----IEN 500

Query: 671 LIQTIGRAARNVNSKVILYADTITKS 696
            +  IGR  R+  + +      +   
Sbjct: 501 YVHQIGRTGRSGKTGIATTFINMNTP 526


>gi|306840451|ref|ZP_07473211.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
 gi|306289585|gb|EFM60800.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
          Length = 482

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 16/191 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVED------VYD 573
            T+  SAT    E+ +     +   +R            V  R  ++  +D      + D
Sbjct: 180 QTLFFSAT-MPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRD 238

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I          ++    K+   +L   L         +H ++    R+ ++   + GK 
Sbjct: 239 LIQSEGDTLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKL 298

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIP+   V   D             +  IGR  R   S       T 
Sbjct: 299 RLLVASDVAARGLDIPDVSHVFNFDVPI-----HAEDYVHRIGRTGRAGRSGKAFTIVTS 353

Query: 694 TKSIQLAIDET 704
           + +  LA  E+
Sbjct: 354 SDTKYLAAIES 364


>gi|269118729|ref|YP_003306906.1| DEAD/DEAH box helicase [Sebaldella termitidis ATCC 33386]
 gi|268612607|gb|ACZ06975.1| DEAD/DEAH box helicase domain protein [Sebaldella termitidis ATCC
           33386]
          Length = 984

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 6/157 (3%)

Query: 296 QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGN 355
           + ++G +   KE+   L +  Y    +   +G +   GD ++IFP   E+   R+  F +
Sbjct: 106 EFQVGKTYSIKEISDFLTENNYDYNYMLEKKGEWSKRGDIVDIFPPSYEN-PVRMEFFDD 164

Query: 356 DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGR 415
           ++E I  F   T + I   + I+IY+N         +    +   E++ + L   E    
Sbjct: 165 ELESIRFFDIDTQKSISKTDRIEIYSNIPQEGRFEFIELLDEIKAEDVLVYLENDELIEY 224

Query: 416 LLEAQRLEQRITYD-----LEMLETTGSCQSIENYSR 447
            +E   L  R   D        L   G   ++ N+S 
Sbjct: 225 KIEEYILLNRDNEDQIRKRYTNLLEKGEIINLMNFSH 261



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 10/185 (5%)

Query: 525 TIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I    +   P+E      Q  D+   +     +  
Sbjct: 617 ILTLTATPIPRTLNLTLLGIRDISVIETPPVNRVPIET-IIEEQGLDIKRAVLKELARDG 675

Query: 584 RILLTVLTKRMAED----LTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +I       +  ED    L   L E  +++ Y+H ++      E I+    G++D+L+  
Sbjct: 676 QIFYIYNNVKFMEDKMKELKSQLPE-FVKIDYIHGQLPPKLIKERIKKFENGEYDILMAT 734

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            ++  G+DI     + I + DK G L     L   +GR+ R     +I    +  KS + 
Sbjct: 735 TIIENGIDISNVNTIFIENFDKLG-LSQVYQLRGRVGRSNRQSYCYLIKSLISTKKSKKR 793

Query: 700 AIDET 704
             +ET
Sbjct: 794 --EET 796


>gi|260426960|ref|ZP_05780939.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
 gi|260421452|gb|EEX14703.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
          Length = 473

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 18/180 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRP----TGLVDPPVEI-----------RSARTQV 568
            T+  SAT    E+E+     +    R            +E            R A  + 
Sbjct: 180 QTLFFSATMAP-EIERITNTFLSNPERVEVARQATASETIEQGAVFFKGSRRDREATEKR 238

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + +   I+   ++    ++    K   + + + L +       +H ++   +R   +   
Sbjct: 239 DVLRQIIDREGEKCTNAIVFCNRKVDVDIVAKSLKKHGYNAEPIHGDLDQSQRTRTLDGF 298

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G   +L+  ++   GLD+P    V   D    G        I   GRA R   +  I+
Sbjct: 299 RDGSIRLLIASDVAARGLDVPSVSHVFNFDVP--GHAEDYVHRIGRTGRAGREGKAFTIV 356


>gi|152995705|ref|YP_001340540.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836629|gb|ABR70605.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 438

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 88/232 (37%), Gaps = 25/232 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT G       +      I   +     + P +E    R++ +D  + +    Q
Sbjct: 159 QTLLFSATYGDGIEAISKEFQSTPISIKVEAQEDLKPNIEQFFVRSENKDKCETLLATLQ 218

Query: 581 QGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                + ++   TK  ++ + ++L E  +  + +H +++  +R +++         VLV 
Sbjct: 219 HFEPRQAIVFCNTKAESQVVADWLSEHKVAAQAIHGDLEQRQRDQVLVRFSNQSSCVLVA 278

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   G+D+ E  LV   D  ++  + +       IGR  R   + + +   T     +
Sbjct: 279 TDVAARGIDVKEIDLVVNYDTTRDTDVHT-----HRIGRTGRAGAAGIAVNLVTSKDDYK 333

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
           +        R+ +   N   N          +E IDP        T IS DA
Sbjct: 334 V--------RDIESRFNITANFI-------ELEAIDPHYRLIPQKTTISFDA 370


>gi|222055835|ref|YP_002538197.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221565124|gb|ACM21096.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 446

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 95/252 (37%), Gaps = 24/252 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--IRSARTQVEDVY--DEINL 577
           +  T++ SAT  S  ++Q    ++ +  R            +  A  QVE     + ++ 
Sbjct: 179 KRQTLLFSAT-YSQSIKQLADELLNKPRRIEVARSNIAADAVTQAIYQVEKSRKREMLSF 237

Query: 578 AAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              +G   ++L+   T+  A+ LTE L    I+   +HS      R   + + R G+F V
Sbjct: 238 LISRGKWNQVLVFARTRYGADKLTEELLYDGIKAAAIHSNKSQSIRNRTLAEFRRGEFRV 297

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI +   V   D       +     +  IGR  R     + L   +  +
Sbjct: 298 LVATDVAARGLDIEQLPHVVNYD-----LPQVPEDYVHRIGRTGRAGKEGIALSLVSHEE 352

Query: 696 -SIQLAIDETTRRREKQLEHNKKHNIN---PQ-SVKEKIMEVIDPILLEDAATTNISIDA 750
             +  AI       EK L++          PQ +VK      I        A    +I A
Sbjct: 353 QPLLKAI-------EKLLKYAIPLQTLAEFPQYAVKRSGANKIKSDKGPSKARKREAIPA 405

Query: 751 QQLSLSKKKGKA 762
           +Q     K+ K+
Sbjct: 406 KQAKSPAKESKS 417


>gi|60551791|gb|AAH90996.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Mus musculus]
          Length = 734

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 87/257 (33%), Gaps = 34/257 (13%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 317 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 376

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 377 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 435

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 436 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICVCFYQ 490

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                         R   QL +  +K  I  + V   +   +D +  +            
Sbjct: 491 P-------------RERGQLRYVEQKAGITFKRVG--VPSTMDLVKSKSMDAIRSLASVS 535

Query: 752 QLSLS--KKKGKAHLKS 766
             ++   +   +  ++ 
Sbjct: 536 YAAVDFFRPSAQRLIEE 552


>gi|73957024|ref|XP_861912.1| PREDICTED: similar to ATP-dependent RNA helicase DDX19 (DEAD-box
           protein 19) (DEAD-box RNA helicase DEAD5) isoform 2
           [Canis familiaris]
          Length = 328

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 118 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNRDEKFQ 171

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 172 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 231

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 232 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 290

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 291 MVDSKHSMNIL----NR---IQEHFNKK 311


>gi|331238187|ref|XP_003331749.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28 [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
 gi|309310739|gb|EFP87330.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28 [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
          Length = 834

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 72/221 (32%), Gaps = 30/221 (13%)

Query: 487 YRGDFHRKATLAEY--GFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT--PGSWELEQCQG 542
              D  +  +      GF L                L   T++ SAT  P    L +   
Sbjct: 587 EAEDSSKMTSFVGGVEGFDLTGAK-----------GLYRQTVMFSATMPPAVERLAKKYL 635

Query: 543 IIVEQII-----RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR--ILLTVLTKRMA 595
                +      +    VD  VE        +     +     QG    I++ V  K+ A
Sbjct: 636 RRPAVVTIGVAGQAVDTVDQQVEFLPNE---DKKRGRLLEVLNQGHTPPIIVFVNQKKTA 692

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           + L + +         +HS     +R   +  LR G+ D+LV  +L   G+D+P+ GLV 
Sbjct: 693 DQLAKDISRAGWSTTTLHSGKNQEQREAALASLRAGESDILVATDLAGRGIDVPDVGLVV 752

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
                      +  + +  IGR  R       +   T   +
Sbjct: 753 NF-----QMAGTIEAYVHRIGRTGRAGKVGTAITFLTNDDA 788


>gi|299142557|ref|ZP_07035688.1| ATP-dependent DNA helicase RecG [Prevotella oris C735]
 gi|298575992|gb|EFI47867.1| ATP-dependent DNA helicase RecG [Prevotella oris C735]
          Length = 700

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 104/260 (40%), Gaps = 25/260 (9%)

Query: 523 PTTIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPV-EIRSARTQVEDVYDEINLAAQ 580
           P  +V++ATP    L     G +   +I        P+  I     Q+  +Y+ I    +
Sbjct: 420 PHVLVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKFDNQMTSLYNGIRQQIR 479

Query: 581 QGLRI-----LLTVLTKRMAEDL---TEYLYERN--IRVRYMHSEVKTLERIEIIRDLRL 630
           QG ++     L+    K   +DL    E L E     R+  +H ++K  E+ E +R    
Sbjct: 480 QGRQVYIVFPLIKENEKNDLKDLEKGYESLLEIFPEFRISKVHGKMKPAEKEEEMRRFVS 539

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+  +LV   ++  G+++P   ++ ILDA + G  +    L Q  GR  R          
Sbjct: 540 GETQILVATTVIEVGVNVPNASVMVILDAQRFGLSQ----LHQLRGRVGRGAKQSYC--- 592

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE----DAATTNI 746
             I  +     +ET +R +   + N    I    +K +    ++         D    +I
Sbjct: 593 --ILVTSYKLSEETRKRIDIMCDTNDGFRIAEADLKLRGPGDLEGTQQSGIAFDLKIADI 650

Query: 747 SIDAQQLSLSKKKGKAHLKS 766
           + D Q + L++ + K  + +
Sbjct: 651 ARDGQLVQLARDEAKKIIDN 670


>gi|195015576|ref|XP_001984228.1| GH15125 [Drosophila grimshawi]
 gi|193897710|gb|EDV96576.1| GH15125 [Drosophila grimshawi]
          Length = 465

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 71/191 (37%), Gaps = 13/191 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII----RPTGLVDPP----VEIRSARTQVEDVYDEI 575
             +  SAT     ++  + I+ E  I    R    +D      V  ++   +  +    I
Sbjct: 255 QMLFFSATYDKEVMDFARLIVSEPTIIRLMREQESLDNIKQYYVNCKNEDGK-YNAIQNI 313

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G   ++   T++ A  L   +      V  +  ++   +R+ ++   R G+  V
Sbjct: 314 YGCISIGQ-AIIFCHTRKTAAWLAAKMTADGHSVAVLSGDLTVEQRLAVLDRFRSGQEKV 372

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKT-SLIQTIGRAARNVNSKVILYADTIT 694
           L+  N+L  G+DI +  +V   D   +    +   + +  IGR  R   S + +      
Sbjct: 373 LITTNVLSRGIDIEQVTIVVNFDLPVDLRGNADCETYLHRIGRTGRFGKSGIAINLIDGE 432

Query: 695 KSIQ--LAIDE 703
           KS+     I E
Sbjct: 433 KSMTVCRTIKE 443


>gi|164659074|ref|XP_001730662.1| hypothetical protein MGL_2458 [Malassezia globosa CBS 7966]
 gi|159104558|gb|EDP43448.1| hypothetical protein MGL_2458 [Malassezia globosa CBS 7966]
          Length = 452

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V   + AE L+  L E  I    +HS +    R+  ++  R  +  +L+  ++   
Sbjct: 267 TIIFVSRCKNAELLSRMLTELGIPNVSLHSMLPQFTRLHNLQMFRARRVPILISTDVGSR 326

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE 703
           GLD+P+  LV   D        +    I  +GR AR       + +       +  AI+ 
Sbjct: 327 GLDVPDVELVVNWDVPA-----AWEDYIHRVGRTARKGRRGWAVSFVTEHDVELIQAIEA 381

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ-LSLSKKKGKA 762
              +R  +LE  +            +++ +  I       +    D +      + K KA
Sbjct: 382 KIHKRLDELELPEAQ----------VLDRLSHISAAKRVASMELHDEKFGEQRERNKRKA 431

Query: 763 HLKSLRKQMH 772
            +    K+  
Sbjct: 432 KIAQGGKRSK 441


>gi|145632667|ref|ZP_01788401.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
 gi|229846508|ref|ZP_04466616.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 7P49H1]
 gi|144986862|gb|EDJ93414.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
 gi|229810601|gb|EEP46319.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 7P49H1]
          Length = 439

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 88/260 (33%), Gaps = 34/260 (13%)

Query: 470 LLFVDESHVTIPQISGMYRG-----DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +L  DE+   +    G            RK TL      L S      L  +    L   
Sbjct: 153 MLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL------LFSATLEGELLVDFAERLLND 206

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + V A P   E ++                       S   +++ +   I    ++  R
Sbjct: 207 PVKVDAEPSRRERKKINQWYYHAD--------------SNEHKIKLLARFIE--TEKVTR 250

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V  +  A +++E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++   
Sbjct: 251 GIVFVRRREDAREVSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+DI +   V   D        S  + +  IGR AR       +            + + 
Sbjct: 311 GIDIDDVSHVMNFD-----LPYSADTYLHRIGRTARAGKKGTAVSFVEAHD--YKLLGKI 363

Query: 705 TRRREKQLEHNKKHNINPQS 724
            R  E+ L+      + P++
Sbjct: 364 KRYTEEILKARILAGLEPRT 383


>gi|114630813|ref|XP_507824.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
           troglodytes]
          Length = 737

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 87/257 (33%), Gaps = 34/257 (13%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 320 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 379

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 380 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 493

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                         R   QL +  +K  I  + V   +   +D +  +            
Sbjct: 494 P-------------RERGQLRYVEQKAGITFKRVG--VPSTMDLVKSKSMDAIRSLASVS 538

Query: 752 QLSLS--KKKGKAHLKS 766
             ++   +   +  ++ 
Sbjct: 539 YAAVDFFRPSAQRLIEE 555


>gi|109129183|ref|XP_001107467.1| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 1 [Macaca
           mulatta]
          Length = 409

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 199 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 252

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 253 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 312

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 313 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 371

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 372 MVDSKHSMNIL----NR---IQEHFNKK 392


>gi|331694934|ref|YP_004331173.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326949623|gb|AEA23320.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 621

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 69/196 (35%), Gaps = 21/196 (10%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRP----TGLVDPPVEIRSARTQVEDVYDEINLA 578
            T++ SAT PG         +     IR      G +    +    R    D  + +   
Sbjct: 288 QTMLFSATMPGPIIALSRAFLNRPTHIRAEESDQGSIHERTKQHVYRAHAMDKVELLTRV 347

Query: 579 AQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            Q   R   ++   TKR  + + + L ER      +H ++    R + +R  R GK DVL
Sbjct: 348 LQAKDRGLTMIFARTKRTVQRVADDLAERGFAAAAVHGDLGQGAREQALRAFRSGKVDVL 407

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT---- 692
           V  ++   G+D+ +   V               + +  IGR  R     V +        
Sbjct: 408 VATDVAARGIDVTDVTHVINYQC-----PEDAKTYVHRIGRTGRAGKEGVAVTLVDWDEM 462

Query: 693 -----ITKSIQLAIDE 703
                ++  + L IDE
Sbjct: 463 PRWKLVSDELGLGIDE 478


>gi|289740253|gb|ADD18874.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 692

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 68/182 (37%), Gaps = 13/182 (7%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPTGLVDPPVEIR--SARTQVEDVYDEINLAA 579
            TI+ SAT  PG   L Q       Q+   +  +     +R      + +D +  I    
Sbjct: 456 QTIMTSATWPPGVRRLAQSYMSNPIQVCVGSLDLAATHSVRQVVEVVEEDDKFYMIKKFI 515

Query: 580 QQ---GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +      ++++    K  A+DL+  L       + +H      +R + I D+  G   +L
Sbjct: 516 KNMQPDDKLIVFCGKKVRADDLSSDLTLDGFLCQAIHGSRDQADREQAIADITSGDVRIL 575

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           +  ++   GLDI +   V   D     F R+    +  +GR  R   +   I Y      
Sbjct: 576 IATDVASRGLDIDDITHVINFD-----FPRNIEEYVHRVGRTGRAGRTGTSISYLTRSDW 630

Query: 696 SI 697
           ++
Sbjct: 631 AM 632


>gi|254580331|ref|XP_002496151.1| ZYRO0C11660p [Zygosaccharomyces rouxii]
 gi|238939042|emb|CAR27218.1| ZYRO0C11660p [Zygosaccharomyces rouxii]
          Length = 435

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 78/218 (35%), Gaps = 11/218 (5%)

Query: 545 VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           ++++  P+ L    + +     +   +Y  +     +    ++ V     AE L   LY 
Sbjct: 222 MDKVAIPSSLKTEYILV-PEYVKEAYLYQLLTCEDYKDSTAMVFVNRTMAAEILRRTLYA 280

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
             +RV  +HS++   ER   +   R     VL+  ++   GLDIP   LV   D      
Sbjct: 281 MGVRVTSLHSQMPQQERTNSLHRFRANAARVLIATDVASRGLDIPTVQLVVNYD-----I 335

Query: 665 LRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
                  I   GR AR       I +      S   AI+E   R  K++    K +    
Sbjct: 336 PSDPDVFIHRSGRTARAGRRGDAISFITQRDISRIQAIEE---RINKKMGECDKVHDT-A 391

Query: 724 SVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGK 761
            +++ +  V         A    +   +++   KK  K
Sbjct: 392 VIRKSLNSVTKAKRESLMAMEKENFGEKKIQRKKKNQK 429


>gi|225559318|gb|EEH07601.1| DEAD-box protein [Ajellomyces capsulatus G186AR]
          Length = 615

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R L+ V TK  A+ + +YLY   +    +HS+    ER + +R  +  K  ++V   +  
Sbjct: 421 RTLVFVNTKAQADLIDDYLYNMGLPSTSIHSDRTQREREDALRAFKTAKSPIMVATGVSA 480

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            GLDI     V   D             I  IGR AR  N  +        ++  +A D
Sbjct: 481 RGLDIKNVMHVINFDMPSATHG-GIEEYIHRIGRTARIGNEGLATSFYNHDRNSDIAAD 538


>gi|194376400|dbj|BAG62959.1| unnamed protein product [Homo sapiens]
          Length = 711

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 87/257 (33%), Gaps = 34/257 (13%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 320 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 379

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 380 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 493

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                         R   QL +  +K  I  + V   +   +D +  +            
Sbjct: 494 P-------------RERGQLRYVEQKAGITFKRVG--VPSTMDLVKSKSMDAIRSLASVS 538

Query: 752 QLSLS--KKKGKAHLKS 766
             ++   +   +  ++ 
Sbjct: 539 YAAVDFFRPSAQRLIEE 555


>gi|220918247|ref|YP_002493551.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956101|gb|ACL66485.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 488

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 75/191 (39%), Gaps = 10/191 (5%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSAR-TQVEDVYDEIN 576
               T++ SAT      E  +  + + +   +  +G +    E R     Q E +   + 
Sbjct: 199 KVRQTLLFSATMAGEVAEFARAHLRDPVRVEVARSGTLAERAEQRVFLPEQREKLPLLMA 258

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           L  +  L  L+   TKR A+ + + L     +V  +H++    +R   +   R G++ VL
Sbjct: 259 LLEEDDLSTLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDGQYRVL 318

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITK 695
           V  ++   G+D+ E G V   D             +  +GR AR   + +   +A     
Sbjct: 319 VATDIAARGIDVAEIGHVVNFD-----LPHVPEDYVHRVGRTARMAASGRASAFASPEEL 373

Query: 696 SIQLAIDETTR 706
            +   I+  TR
Sbjct: 374 DLLRDIERLTR 384


>gi|157736313|ref|YP_001488996.1| DEAD-box ATP dependent DNA helicase [Arcobacter butzleri RM4018]
 gi|157698167|gb|ABV66327.1| ATP-dependent RNA helicase, DEAD box family [Arcobacter butzleri
           RM4018]
          Length = 516

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 66/183 (36%), Gaps = 31/183 (16%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TK+  + L+ +L  +    + +H +++  +R E IR  +  K ++L+  ++  
Sbjct: 238 KSIIFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILIATDVAA 297

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLD+ +   V               S +  IGR  R                + ++I  
Sbjct: 298 RGLDVNDVTHVFNYH-----LPFDSESYVHRIGRTGRAGKEG-----------MAISIVT 341

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
               R  Q             +++ I   ++  ++ +     +    +   L ++  +  
Sbjct: 342 PHEFRMLQ------------KIEKSIGTKLESKVVPNIG---LVKKKKFAELKQQVLEQE 386

Query: 764 LKS 766
           +K 
Sbjct: 387 IKD 389


>gi|126174213|ref|YP_001050362.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125997418|gb|ABN61493.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 467

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 81/239 (33%), Gaps = 28/239 (11%)

Query: 555 VDPPVEIRSART-----QVEDVYDEINLAAQQG-----------LRILLTVLTKRMAEDL 598
           V+ PVEI  AR      Q++     ++   +              + L+ + TK+ A  L
Sbjct: 200 VENPVEIEIARDSANAPQIDQWLITVDKDKKSALLSKLITEQAWEQALIFIQTKQGAAKL 259

Query: 599 TEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD 658
              L +R I    +HS      R +++ D + G+   LV   +   G+DI     V   D
Sbjct: 260 VSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGRLRFLVATGVASRGIDIDALTRVVNYD 319

Query: 659 ADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRREKQLEHNKK 717
              E         I  IGR  R       I +          AI+   RR    +   + 
Sbjct: 320 LPDE-----ADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCAIE---RRLGHIIVRKEI 371

Query: 718 HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAAD 776
               P    +++   I   + ++         A +   S+   +   ++   + H +A 
Sbjct: 372 EGFVP---NKEVPVSILDFVPKNTTPKTFKARAPEARTSRPAKEGSFETAHAKKHRSAK 427


>gi|304392205|ref|ZP_07374147.1| ATP-dependent RNA helicase RhlE [Ahrensia sp. R2A130]
 gi|303296434|gb|EFL90792.1| ATP-dependent RNA helicase RhlE [Ahrensia sp. R2A130]
          Length = 536

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 73/227 (32%), Gaps = 28/227 (12%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII---- 549
            + + GF       +   R E        T++ SAT      EL +      E+I     
Sbjct: 192 QMLDMGFI------HALRRIEPLLGRPRQTLLFSATMPKLVEELSKSYLTNPERIEVARA 245

Query: 550 -RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
            +    V   V   + + ++  +   +          L+   TK   E L + L  +   
Sbjct: 246 GKAADKVRQSVHYIATKDKLNLLSKLLAERPDD--LSLVFGRTKHGCEKLMKQLVAQGFA 303

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H      +R   +R+ + G   +LV  ++   G+DIP    V   +  +     + 
Sbjct: 304 AASIHGNKSQGQRDRALREFKSGAVRILVATDVAARGIDIPAVSHVYNFNLPEV--PENY 361

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
              I    RA R+  +               A DE    R+ Q   N
Sbjct: 362 VHRIGRTARAGRDGEAVAFC-----------APDERKMLRDIQRLMN 397


>gi|227827050|ref|YP_002828829.1| DEAD/DEAH box helicase [Sulfolobus islandicus M.14.25]
 gi|229584218|ref|YP_002842719.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.27]
 gi|227458845|gb|ACP37531.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.14.25]
 gi|228019267|gb|ACP54674.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.27]
          Length = 360

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 19/185 (10%)

Query: 527 VVSATPGSW------ELEQCQGIIVEQIIRPTGLVDPP-VEIR-SARTQVEDVYDEINLA 578
             SAT          E  +    IV    +P   V    V++R     +V  + +EI+  
Sbjct: 181 FFSATIPDEIMTLAKEFSKDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLLEEID-- 238

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
              G +IL+   T+  A  L   L  + + V  +  ++    R++     + GK++VLV 
Sbjct: 239 ---GEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            +L   G+DI +   V   D  ++       + I  +GR  R       I +       +
Sbjct: 296 TDLASRGIDIIDVNKVINFDIPRDV-----ETYIHRVGRTGRMGRVGQAITFYTFREADM 350

Query: 698 QLAID 702
              I+
Sbjct: 351 IKRIN 355


>gi|159110427|ref|XP_001705473.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
 gi|157433558|gb|EDO77799.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
          Length = 900

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 12/172 (6%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIR------SARTQVEDVYDEIN 576
             I+VSAT P +  +     +    II     +  P E+           +   +     
Sbjct: 233 QIIMVSATMPNNLAVFSKARLQNPTIIAAENDMVLPNELTNQFIYCPINYREAALLYICR 292

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               +  R+L+ V TK   E LT  L   N+R   ++  +   +R   + +   G++ +L
Sbjct: 293 ELVPKTWRLLVFVATKHHCEYLTSILQANNLRATCIYGSLDQKQRTLALSEFDKGRYSIL 352

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +  ++   G+DIP    V   +     F  S  + +  +GR+AR  +  + +
Sbjct: 353 ISTDVAARGIDIPNLNCVINYN-----FPSSGKNYVHRVGRSARAGSYGLCV 399


>gi|139438943|ref|ZP_01772403.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC
           25986]
 gi|133775654|gb|EBA39474.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC
           25986]
          Length = 749

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 10/167 (5%)

Query: 524 TTIVVSATPGSW---ELEQCQGIIVEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLA 578
            T++ SAT       E+           I P       V+  +     + ++      L 
Sbjct: 245 QTLLFSATLDEEAVGEITDLVSDPARVEIAPATSTADTVDQFVFPVSIEAKNNLLPEFLK 304

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +   R ++ + TK  A+     L  + I+   +H      +R   +   R G  DVLV 
Sbjct: 305 KEGPERTIVFMRTKHRADSCCRRLERKGIKAAAIHGNRSQAQRERALSAFRDGTVDVLVA 364

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            ++L  G+DI +   V   D   E      T  I  IGR  R     
Sbjct: 365 TDVLARGIDISDVRYVVNFDVPAE-----PTDYIHRIGRTGRAGELG 406


>gi|116872678|ref|YP_849459.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741556|emb|CAK20680.1| ATP-dependent RNA helicase DbpA family [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 470

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 108/317 (34%), Gaps = 50/317 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMY-RGDFHRKATLAEYGFRLPSCMDNRPLRF 515
            P  L ++I + +L     +H+ + ++  M   G   +   +     RLP          
Sbjct: 124 TPGRLLDHIEKGTLNVDKVAHLVLDEVDEMLSMGFIDQVEDILS---RLP---------- 170

Query: 516 EEWNCLRPTTIVVSATPGSWELEQ--CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
                 +   +  SAT    E++    +      +I        P+       Q +    
Sbjct: 171 -----KKRQNLFFSAT-MPEEMQDLIKRYQDNPMVIEMASEKTNPI--FHVEMQTDTKEK 222

Query: 574 EINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            +      +     ++   TK   ++L+E L   ++R   +H  ++  +R + + + + G
Sbjct: 223 TLKDVLITENPDSAIIFCNTKNQVDELSEML---DLRTSKIHGGLRQEDRFQAMDEFKSG 279

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYA 690
           K   L+  ++   G+D+    LV   D   E     K + +  IGR  R  NS K I + 
Sbjct: 280 KSRFLIATDVAGRGIDVENVSLVINYDLPIE-----KENYVHRIGRTGRAGNSGKAISFV 334

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
            T    +   I+E        +E            K++   +I+    E+A         
Sbjct: 335 KTQENPLLRDIEEM---LNISIE------------KKRKPTIIEVRASEEAFHKKQQKRP 379

Query: 751 QQLSLSKKKGKAHLKSL 767
                  +K   ++  L
Sbjct: 380 TIKKARGEKLNKNIMKL 396


>gi|3775993|emb|CAA09199.1| RNA helicase [Arabidopsis thaliana]
          Length = 505

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 12/137 (8%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  D R G    LV  +L   G
Sbjct: 372 IIFCNSVNRVELLAKKITELGYSCSYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG 431

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +DI    +V   D     F ++  + +  +GR+ R  +  + +   T      L      
Sbjct: 432 IDIQAVNVVINFD-----FPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNL------ 480

Query: 706 RRREKQLEHNKKHNINP 722
             R +Q    +   I P
Sbjct: 481 -YRIEQELGTEIKQIPP 496


>gi|84468310|dbj|BAE71238.1| hypothetical protein [Trifolium pratense]
          Length = 402

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +  A  +G + ++   TKR A++++ Y    +I  + +H ++   +R   +   R 
Sbjct: 121 ILSGLISAYGKGGKTIVFTRTKRDADEIS-YSLTSSIASKALHGDISQYQRERTLDGFRQ 179

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           G+F VLV  ++   GLDIP   L+               + +   GR  R       +
Sbjct: 180 GRFTVLVATDVASRGLDIPNVDLII-----HYELPDGPETFVHRSGRTGRAGKEGAAV 232


>gi|67541074|ref|XP_664311.1| hypothetical protein AN6707.2 [Aspergillus nidulans FGSC A4]
 gi|40739335|gb|EAA58525.1| hypothetical protein AN6707.2 [Aspergillus nidulans FGSC A4]
 gi|259480293|tpe|CBF71291.1| TPA: DEAD/DEAH box helicase, putative (AFU_orthologue;
           AFUA_7G05530) [Aspergillus nidulans FGSC A4]
          Length = 643

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 78/214 (36%), Gaps = 18/214 (8%)

Query: 567 QVEDVYDEINLA-AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           Q  D+     LA A +    L+  +     + LTE   +  I  RY+        R E +
Sbjct: 260 QTNDITVRAWLANAAERKSTLVFCVDVEHTKALTETFRQYGIDARYITGTTPKTTRDEQL 319

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R  +F VL+   L  EG D+P    V +    +     S+  LIQ IGR  R    K
Sbjct: 320 DKFRAREFPVLLNCGLFTEGTDMPNIDCVLLARPTR-----SRNLLIQMIGRGLRLYPGK 374

Query: 686 VILYADTITKSIQLAIDET------------TRRREKQLEHNKKHNINPQSVKEKIMEVI 733
              +   +  ++   +  T             +   K L+  K    N +  +E ++   
Sbjct: 375 KDCHIIDMVATLNTGVISTPTLFGLHPDEVLEKVTAKDLKERKATGQNVRDPEESLLSES 434

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLKSL 767
            P L +D   T    D     +   K + H++SL
Sbjct: 435 GPELPDDLKLTFTKYDTIYDLIHDMKSEKHIRSL 468



 Score = 41.2 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 6/77 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ------RPAIVMAPNKILA 206
           Q   I  +LK +    K   +   TG+GKT    ++I  +          +++   + L 
Sbjct: 38  QEECIQSVLKHVEQGHKRLGISLATGAGKTVIFTQLIGRIPPRNILGDKTLIVVHRRELV 97

Query: 207 AQLYSEFKNFFPHNAVE 223
            Q Y      +P   VE
Sbjct: 98  EQAYRHCHLAYPDRTVE 114


>gi|332637958|ref|ZP_08416821.1| putative ATP-dependent RNA helicase [Weissella cibaria KACC 11862]
          Length = 524

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 13/192 (6%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE---IRSARTQVEDVYDEINL 577
            T++ SAT  P    +        E I I    L    VE   +R    +  D    I  
Sbjct: 176 QTLLFSATMPPAIKRIGVQFMTEPEHIQIAAKELTTDLVEQYYVRVRDFEKFDTLTHILD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q  L I+    TKR  ++LT  L  R      +H ++   +R ++++  + G+  +LV
Sbjct: 236 VQQPKLAIM-FGRTKRRVDELTRGLELRGFNAAGIHGDLTQQKRSQVLKQFKNGEIKILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS 696
             ++   GLD+     V   D       +   S +  IGR  R       + +       
Sbjct: 295 ATDVAARGLDVSGVDYVYNFD-----IPQDSESYVHRIGRTGRAGAHGTSVTFISNAEMD 349

Query: 697 IQLAIDETTRRR 708
               I++ T++R
Sbjct: 350 YLKDIEKLTKKR 361


>gi|304410338|ref|ZP_07391957.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307301951|ref|ZP_07581709.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304351747|gb|EFM16146.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913989|gb|EFN44410.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 443

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 97/264 (36%), Gaps = 39/264 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +           +SH+++  I  +   +  R   L E GF  P        +  
Sbjct: 151 TPGRLLD--------LCKQSHISLDSIKHLVLDEADR---LLEMGF-WPDVQ-----KLM 193

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            +      T++ SAT     L +    + E+++    L     ++ S   ++E+    +N
Sbjct: 194 AFMPKLKQTLLFSAT-----LPEALDTLTEKLLVNEPLRVEAHKVNSVAGEIEEQLYLVN 248

Query: 577 LAAQQGL-----------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
             ++  +           ++L+ +  +  A+ + + L +  ++V  +H E     R + +
Sbjct: 249 KGSKAQVLIALLKQYQWPQVLVFISARDDADAVAKRLAKAGMKVAALHGEKDQTVRSQTL 308

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D +  +  VLV  +L+  G+ +    +V  LD        S    +  IGR AR     
Sbjct: 309 ADFKANRIQVLVATDLMARGIHVDALPVVINLD-----LPMSAPVYVHRIGRTARAGEKG 363

Query: 686 -VILYADTITKSIQLAIDETTRRR 708
             I        +   AI   T R+
Sbjct: 364 LAISLVCHGEMATLTAIRSLTARK 387


>gi|294673582|ref|YP_003574198.1| DEAD/DEAH box helicase [Prevotella ruminicola 23]
 gi|294472821|gb|ADE82210.1| ATP-dependent helicase, DEAD/DEAH box family [Prevotella ruminicola
           23]
          Length = 446

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 11/181 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV---EDVYDEINLAAQ 580
             I+ SAT    ++ +    ++   +     V  P E       V         I    +
Sbjct: 183 QRIMFSAT-MPKKIRELAVQLLHNPVEIQIAVSKPAEKIHQMAYVCYEPQKLKIIQDIFK 241

Query: 581 QG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +G   R+++    K   +++T  L   +I    MHS++   ER E +   + G+ DVLV 
Sbjct: 242 KGDLQRVIIFSGKKERVKEVTRKLKSMHINCDQMHSDLSQAERDEAMYRFKAGQTDVLVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            +++  G+DI +  LV   D   +         +  IGR AR       +   +     +
Sbjct: 302 TDIVARGIDIDDIRLVINYDVPSD-----SEDYVHRIGRTARADRDGEAITFVSDDDMYR 356

Query: 699 L 699
            
Sbjct: 357 F 357


>gi|169596224|ref|XP_001791536.1| hypothetical protein SNOG_00869 [Phaeosphaeria nodorum SN15]
 gi|111071244|gb|EAT92364.1| hypothetical protein SNOG_00869 [Phaeosphaeria nodorum SN15]
          Length = 598

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 85/238 (35%), Gaps = 24/238 (10%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTI--PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLR 514
            P  L +++   SLL +     TI       +  G       L + G  + S  D+  L 
Sbjct: 266 TPGRLMDFMGNISLLSLKRLKYTIIDEADELLSNGWEEIMEKLFQGGGDINSDGDHTYLM 325

Query: 515 FEEWNCLRPTTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
           F             SAT            +E+    I    +  T        +  A ++
Sbjct: 326 F-------------SATFPKEARRLAKEYMEEDAVRIKVGRVGSTHENIKQQIVYVAESE 372

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
                 ++  + + G RIL+   +K   + + +++Y + + V  MHS+    ER + +R 
Sbjct: 373 KNQALFDLIFSEEPG-RILVFTNSKFKCDTVDDFIYNKGLPVTSMHSDRTQREREDALRS 431

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            R G+  ++V   +   GLD+     V   D          T  I  IGR AR  N  
Sbjct: 432 FRTGRCPIMVATGVSARGLDVANIKHVINYDLPSTQHG-GITEYIHRIGRTARIGNEG 488


>gi|50311547|ref|XP_455798.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74605081|sp|Q6CJU1|DBP5_KLULA RecName: Full=ATP-dependent RNA helicase DBP5
 gi|49644934|emb|CAG98506.1| KLLA0F15950p [Kluyveromyces lactis]
          Length = 469

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L +   +V  +H ++++ +R  +I D R G+  VL+  N+L  G
Sbjct: 321 IIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARG 380

Query: 646 LDIPECGLVAILDADKEGFLRSKTS-LIQTIGRAARNVNSKVI--LYADTITKSIQLAI 701
           +DIP   +V   D       ++  S  +  IGR  R   + V      D  +  +  AI
Sbjct: 381 IDIPSVSMVVNYDLPTLPNGQADPSTYVHRIGRTGRFGRTGVAISFIHDKKSFEVLSAI 439


>gi|19075356|ref|NP_587856.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces pombe 972h-]
 gi|48474674|sp|Q9P7C7|PRP11_SCHPO RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp11
 gi|7380876|emb|CAB85446.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces pombe]
          Length = 1014

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 92/261 (35%), Gaps = 27/261 (10%)

Query: 524 TTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT P + E      L++   I V         V+  VE+R   ++   + + + 
Sbjct: 601 QTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLG 660

Query: 577 LAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                 L  R L+ V  +  A+ L   L +R      +H      +R   I D + G FD
Sbjct: 661 ELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFD 720

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VL+  +++  GLD+    LV   D             +  +GR  R  ++ V +   T  
Sbjct: 721 VLIATSVVARGLDVKSLQLVVNYDC-----PNHMEDYVHRVGRTGRAGHTGVAVTFITPE 775

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
           +  + A+D                   P+ ++    + ++ +              + LS
Sbjct: 776 QE-KYAVD-------IAKALKMSKQPVPKELQTLASQFLEKVKAGKEKAAGGGFGGKGLS 827

Query: 755 LSKKKGKAHLKSLRKQMHLAA 775
              +   A      ++M   A
Sbjct: 828 RLDETRNA-----ERKMQRKA 843


>gi|146294196|ref|YP_001184620.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145565886|gb|ABP76821.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 550

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 11/195 (5%)

Query: 521 LRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSAR-TQVEDVYDE 574
            +   ++ SAT      E  +G++   VE  + P       V+  +      Q   +  +
Sbjct: 188 KQRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKAALLTQ 247

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +        ++L+   TK  A  L + L E  I+   +H       R + + D + G+  
Sbjct: 248 LI-KQHDWQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVR 306

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI- 693
           VLV  ++   GLDI +   V   D             I   GRA  +  +  ++ ++ I 
Sbjct: 307 VLVATDIAARGLDIDQLPQVVNFDLP--NVPEDYVHRIGRTGRAGASGQAVSLVSSEEIK 364

Query: 694 -TKSIQLAIDETTRR 707
               I+  I+    R
Sbjct: 365 LLNDIERLINRILDR 379



 Score = 42.0 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 105/299 (35%), Gaps = 63/299 (21%)

Query: 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR------PAIVMAP 201
            PS  Q  AI  +L+G       Q   G T +G T  + +++   Q+        +V+ P
Sbjct: 34  TPSPIQAQAIPAVLQGQDVMAAAQTGTGKT-AGFTLPLLELLSKGQKAQAGQVRTLVLTP 92

Query: 202 NKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHS 261
            + LAAQ+           +VE +           Y+P     +     IN QI ++RH 
Sbjct: 93  TRELAAQVAE---------SVETYGK---------YLPLRSAVVFGGVPINPQIAKLRHG 134

Query: 262 ATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQD 321
                      ++V++   +  + + ++     +++ + D  ++      ++   + R  
Sbjct: 135 V---------DVLVATPGRLMDLYNQKAVKFNQLEILVLDEADR------MLDMGFIRD- 178

Query: 322 IGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISE---FYPLTGQKIRNVETIK 378
                    +    + I P   +++ +  +   ++I E+++     P+  +         
Sbjct: 179 ---------IRK-ILAILPKQRQNLMFSATFS-DEIRELAKGLVNNPV--EISVTPRNAA 225

Query: 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTG 437
                 +V P      A       L  +LI+     ++L   R +       + LE  G
Sbjct: 226 ATTVKQWVCPVDKGQKA------ALLTQLIKQHDWQQVLVFSRTKHGANRLAKNLEEAG 278


>gi|325114733|emb|CBZ50289.1| putative ATP-dependent RNA helicase [Neospora caninum Liverpool]
          Length = 685

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 5/111 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  A+ L   L    I V  +H++    +R +I+   R G+  VL+  +++  
Sbjct: 497 VLIFVQSKERAKQLYCELVYDGIFVECIHADKTKKQRDDIVEAFRRGQIWVLICTDVMAR 556

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           G+D     LV   D     F +S    I  IGR  R       +   T T 
Sbjct: 557 GVDFKNVELVINYD-----FPQSAAVYIHRIGRTGRAGRQGRAITFYTTTD 602


>gi|296220523|ref|XP_002756345.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Callithrix
           jacchus]
          Length = 711

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 87/257 (33%), Gaps = 34/257 (13%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 320 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 379

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 380 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 493

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                         R   QL +  +K  I  + V   +   +D +  +            
Sbjct: 494 P-------------RERGQLRYVEQKAGITFKRVG--VPSTMDLVKSKSMDAIRSLASVS 538

Query: 752 QLSLS--KKKGKAHLKS 766
             ++   +   +  ++ 
Sbjct: 539 YAAVDFFRPSAQRLIEE 555


>gi|301108607|ref|XP_002903385.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262097757|gb|EEY55809.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 666

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 76/206 (36%), Gaps = 24/206 (11%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            +R +++ + + + L A  G   L+   TK+ A+++   L       R +H ++    R 
Sbjct: 285 PSRDRIQVLENVLRLHAHDGQ-TLVFTETKQEADEIANSLP--GQDARALHGDLSQGMRT 341

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAAR 680
             +   R G    LV  ++   GLDI    LV      +DKE F+          GRA R
Sbjct: 342 STMNGFRNGHVKTLVCTDIAARGLDIANVELVVQYRLPSDKESFVH----RAGRTGRAGR 397

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           +  + V    +  +  +        RR + +      H   P+       E +    LED
Sbjct: 398 SGTNIVFFDRNDTSDVLDF-----ERRYKFKFA----HAAPPRP------EQMMTGALED 442

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS 766
                 S+      L  +  +A ++ 
Sbjct: 443 VNKQLSSLPKANAQLFDEAAQAMIEQ 468


>gi|297562761|ref|YP_003681735.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847209|gb|ADH69229.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 516

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 67/192 (34%), Gaps = 20/192 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED------------V 571
            T++ SAT    E+       + +        D  ++  +   Q+              +
Sbjct: 172 QTMLFSAT-MPSEIVSLSRKYLRRPTHVRASDDDEIDGSAITGQITQHAFRTHQMDKIEM 230

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
              +  A+  G   ++   TKR  + +   L  R   V  +H ++   +R   +R  R G
Sbjct: 231 LARLLQASDHGQS-MVFCQTKRACDRVAGDLEARGFAVAAVHGDLGQSQRERALRAFRNG 289

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYA 690
           K ++LV  ++   GLD+ +   V   +         + +    IGR  R   S   + + 
Sbjct: 290 KINILVATDVAARGLDVDDVTHVVNYET-----PEDEKTYTHRIGRTGRAGRSGTAVTFV 344

Query: 691 DTITKSIQLAID 702
           D         I+
Sbjct: 345 DWQEMPRWKLIN 356


>gi|254421014|ref|ZP_05034738.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
 gi|196187191|gb|EDX82167.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
          Length = 545

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 57/184 (30%), Gaps = 15/184 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVY 572
           R  T+  SAT    E+ +     ++   R            +    V I ++  + +   
Sbjct: 178 RRQTLFFSAT-MPPEITRLTAAFLKDPTRIEASRPAMTADTITQYIVRIPTSDPKAKRAA 236

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               ++       ++    K   + + + L         +H ++    R + + D R G 
Sbjct: 237 LRALMSRTDVRNGIVFCNRKSEVDIVAKSLKTHGFDAAAIHGDLDQSHRTKTLADFRSGA 296

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             +LV  ++   GLDIP+   V   D             +  IGR  R           T
Sbjct: 297 LKILVASDVAARGLDIPDVSHVFNYDVS-----HHADDYVHRIGRTGRAGKLGQAFMIVT 351

Query: 693 ITKS 696
               
Sbjct: 352 PADD 355


>gi|195339697|ref|XP_002036453.1| GM18037 [Drosophila sechellia]
 gi|195578081|ref|XP_002078894.1| GD23667 [Drosophila simulans]
 gi|194130333|gb|EDW52376.1| GM18037 [Drosophila sechellia]
 gi|194190903|gb|EDX04479.1| GD23667 [Drosophila simulans]
          Length = 459

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 88/255 (34%), Gaps = 49/255 (19%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PG------------SWELEQCQG 542
            L    F     +D+  L+        P  ++ SAT P              +E+   + 
Sbjct: 211 KLLSLDF--QGMLDHVILKLP----KDPQILLFSATFPLTVKNFMEKHLREPYEINLMEE 264

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           + ++ + +    V    ++           + +    Q    I +   + +  E L + +
Sbjct: 265 LTLKGVTQYYAFVQERQKVH--------CLNTLFSKLQINQSI-IFCNSTQRVELLAKKI 315

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            E      Y+H+++    R  +  D R G    LV  +L   G+D+    +V   D    
Sbjct: 316 TELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVINFD---- 371

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
            F R   + +  IGR+ R  +  + +   T      L       R EK+L          
Sbjct: 372 -FPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDL------HRIEKELG--------- 415

Query: 723 QSVKEKIMEVIDPIL 737
            +  + I +VIDP L
Sbjct: 416 -TEIKPIPKVIDPAL 429


>gi|195146854|ref|XP_002014399.1| GL19172 [Drosophila persimilis]
 gi|194106352|gb|EDW28395.1| GL19172 [Drosophila persimilis]
          Length = 459

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 88/255 (34%), Gaps = 49/255 (19%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PG------------SWELEQCQG 542
            L    F     +D+  L+        P  ++ SAT P              +E+   + 
Sbjct: 211 KLLSLDF--QGMLDHVILKLP----KDPQILLFSATFPLTVKNFMEKHLREPYEINLMEE 264

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           + ++ + +    V    ++           + +    Q    I +   + +  E L + +
Sbjct: 265 LTLKGVTQYYAFVQERQKVH--------CLNTLFSKLQINQSI-IFCNSTQRVELLAKKI 315

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            E      Y+H+++    R  +  D R G    LV  +L   G+D+    +V   D    
Sbjct: 316 TELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVINFD---- 371

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
            F R   + +  IGR+ R  +  + +   T      L       R EK+L          
Sbjct: 372 -FPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDL------HRIEKELG--------- 415

Query: 723 QSVKEKIMEVIDPIL 737
            +  + I +VIDP L
Sbjct: 416 -TEIKPIPKVIDPAL 429


>gi|194859644|ref|XP_001969421.1| GG10095 [Drosophila erecta]
 gi|195473543|ref|XP_002089052.1| me31B [Drosophila yakuba]
 gi|190661288|gb|EDV58480.1| GG10095 [Drosophila erecta]
 gi|194175153|gb|EDW88764.1| me31B [Drosophila yakuba]
          Length = 459

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 88/255 (34%), Gaps = 49/255 (19%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PG------------SWELEQCQG 542
            L    F     +D+  L+        P  ++ SAT P              +E+   + 
Sbjct: 211 KLLSLDF--QGMLDHVILKLP----KDPQILLFSATFPLTVKNFMEKHLREPYEINLMEE 264

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           + ++ + +    V    ++           + +    Q    I +   + +  E L + +
Sbjct: 265 LTLKGVTQYYAFVQERQKVH--------CLNTLFSKLQINQSI-IFCNSTQRVELLAKKI 315

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            E      Y+H+++    R  +  D R G    LV  +L   G+D+    +V   D    
Sbjct: 316 TELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVINFD---- 371

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
            F R   + +  IGR+ R  +  + +   T      L       R EK+L          
Sbjct: 372 -FPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDL------HRIEKELG--------- 415

Query: 723 QSVKEKIMEVIDPIL 737
            +  + I +VIDP L
Sbjct: 416 -TEIKPIPKVIDPAL 429


>gi|194761692|ref|XP_001963062.1| GF15754 [Drosophila ananassae]
 gi|190616759|gb|EDV32283.1| GF15754 [Drosophila ananassae]
          Length = 460

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 88/255 (34%), Gaps = 49/255 (19%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PG------------SWELEQCQG 542
            L    F     +D+  L+        P  ++ SAT P              +E+   + 
Sbjct: 212 KLLSLDF--QGMLDHVILKLP----KDPQILLFSATFPLTVKNFMEKHIREPYEINLMEE 265

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           + ++ + +    V    ++           + +    Q    I +   + +  E L + +
Sbjct: 266 LTLKGVTQYYAFVQERQKVH--------CLNTLFSKLQINQSI-IFCNSTQRVELLAKKI 316

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            E      Y+H+++    R  +  D R G    LV  +L   G+D+    +V   D    
Sbjct: 317 TELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVINFD---- 372

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
            F R   + +  IGR+ R  +  + +   T      L       R EK+L          
Sbjct: 373 -FPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDL------HRIEKELG--------- 416

Query: 723 QSVKEKIMEVIDPIL 737
            +  + I +VIDP L
Sbjct: 417 -TEIKPIPKVIDPAL 430


>gi|157594|gb|AAA28603.1| RNA helicase [Drosophila melanogaster]
          Length = 459

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 88/255 (34%), Gaps = 49/255 (19%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PG------------SWELEQCQG 542
            L    F     +D+  L+        P  ++ SAT P              +E+   + 
Sbjct: 211 KLLSLDF--QGMLDHVILKLP----KDPQILLFSATFPLTVKNFMEKHLREPYEINLMEE 264

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           + ++ + +    V    ++           + +    Q    I +   + +  E L + +
Sbjct: 265 LTLKGVTQYYAFVQERQKVH--------CLNTLFSKLQINQSI-IFCNSTQRVELLAKKI 315

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            E      Y+H+++    R  +  D R G    LV  +L   G+D+    +V   D    
Sbjct: 316 TELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVINFD---- 371

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
            F R   + +  IGR+ R  +  + +   T      L       R EK+L          
Sbjct: 372 -FPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDL------HRIEKELG--------- 415

Query: 723 QSVKEKIMEVIDPIL 737
            +  + I +VIDP L
Sbjct: 416 -TEIKPIPKVIDPAL 429


>gi|24583281|ref|NP_723539.1| maternal expression at 31B, isoform B [Drosophila melanogaster]
 gi|22946109|gb|AAN10728.1| maternal expression at 31B, isoform B [Drosophila melanogaster]
          Length = 428

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 88/255 (34%), Gaps = 49/255 (19%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PG------------SWELEQCQG 542
            L    F     +D+  L+        P  ++ SAT P              +E+   + 
Sbjct: 180 KLLSLDF--QGMLDHVILKLP----KDPQILLFSATFPLTVKNFMEKHLREPYEINLMEE 233

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           + ++ + +    V    ++           + +    Q    I +   + +  E L + +
Sbjct: 234 LTLKGVTQYYAFVQERQKVH--------CLNTLFSKLQINQSI-IFCNSTQRVELLAKKI 284

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            E      Y+H+++    R  +  D R G    LV  +L   G+D+    +V   D    
Sbjct: 285 TELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVINFD---- 340

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
            F R   + +  IGR+ R  +  + +   T      L       R EK+L          
Sbjct: 341 -FPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDL------HRIEKELG--------- 384

Query: 723 QSVKEKIMEVIDPIL 737
            +  + I +VIDP L
Sbjct: 385 -TEIKPIPKVIDPAL 398


>gi|24583279|ref|NP_523533.2| maternal expression at 31B, isoform A [Drosophila melanogaster]
 gi|41712743|sp|P23128|DDX6_DROME RecName: Full=Putative ATP-dependent RNA helicase me31b; AltName:
           Full=Maternal expression at 31B
 gi|15291637|gb|AAK93087.1| LD21247p [Drosophila melanogaster]
 gi|22946108|gb|AAF52881.2| maternal expression at 31B, isoform A [Drosophila melanogaster]
 gi|220954648|gb|ACL89867.1| me31B-PA [synthetic construct]
          Length = 459

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 88/255 (34%), Gaps = 49/255 (19%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PG------------SWELEQCQG 542
            L    F     +D+  L+        P  ++ SAT P              +E+   + 
Sbjct: 211 KLLSLDF--QGMLDHVILKLP----KDPQILLFSATFPLTVKNFMEKHLREPYEINLMEE 264

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
           + ++ + +    V    ++           + +    Q    I +   + +  E L + +
Sbjct: 265 LTLKGVTQYYAFVQERQKVH--------CLNTLFSKLQINQSI-IFCNSTQRVELLAKKI 315

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            E      Y+H+++    R  +  D R G    LV  +L   G+D+    +V   D    
Sbjct: 316 TELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVINFD---- 371

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
            F R   + +  IGR+ R  +  + +   T      L       R EK+L          
Sbjct: 372 -FPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDL------HRIEKELG--------- 415

Query: 723 QSVKEKIMEVIDPIL 737
            +  + I +VIDP L
Sbjct: 416 -TEIKPIPKVIDPAL 429


>gi|321252954|ref|XP_003192576.1| RNA helicase [Cryptococcus gattii WM276]
 gi|317459045|gb|ADV20789.1| RNA helicase, putative [Cryptococcus gattii WM276]
          Length = 615

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 14/166 (8%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E+     + ++ + +    V+   ++           + +    Q    I +   +  
Sbjct: 235 PYEINLMDELTLKGVTQYYAYVEESQKVH--------CLNTLFSKLQINQSI-IFCNSTN 285

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L + + E      Y H++++   R  +  D R G    LV  +LL  G+DI    +
Sbjct: 286 RVELLAKKVTELGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVCSDLLTRGIDIQAVNV 345

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           V   D     F R+  S +  IGR+ R  +  + +   T+     L
Sbjct: 346 VINFD-----FPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNL 386


>gi|299115674|emb|CBN75874.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 699

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 69/189 (36%), Gaps = 16/189 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII--------RPTGLVDPPVEIRSARTQVEDVYDEI 575
            T + SAT    E++Q     +   I          +  V   VE      +   +   +
Sbjct: 399 QTFMFSAT-FPREIQQLAADFMTDYIFLAVGRVGSASKDVTQTVEYVDQNQKFPMLLRTL 457

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           N     GL +L+   TKR A+ L   L ++      +H +    ER + +R  + G   +
Sbjct: 458 NNLEATGL-VLVFTETKRNADYLEYQLSDQGYPASSIHGDKTQREREDALRLFKTGTTPI 516

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLDI     V   D        +    +  IGR  R  N    + + +   
Sbjct: 517 LVATDVAARGLDINNVTQVINYD-----LPTNIDDYVHRIGRTGRVGNVGNALSFMNEKN 571

Query: 695 KSIQLAIDE 703
           +++   + E
Sbjct: 572 RNVARELYE 580


>gi|315499759|ref|YP_004088562.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB
           48]
 gi|315417771|gb|ADU14411.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
           48]
          Length = 501

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 56/185 (30%), Gaps = 17/185 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE----QIIRPT----GLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT         +  +      ++ RP      +      + S  +++      +
Sbjct: 180 QTLFFSATMPPEITRLTEQFLKNPVRIEVSRPATTNENITQYVYRVPSGDSKLLAKAKRL 239

Query: 576 NLAAQQGL----RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            L    G       ++    K   + + + L         +H ++    R++ +   R G
Sbjct: 240 ALRTLIGQLEINNGIVFCNRKTDVDIVAKSLSVHGFNAAPIHGDLDQSLRMKTLDAFRSG 299

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  +LV  ++   GLDIP    V   D             +  IGR  R   +       
Sbjct: 300 ELKLLVASDVAARGLDIPSVSHVFNFDV-----PHHADDYVHRIGRTGRAGRTGEAYLIL 354

Query: 692 TITKS 696
                
Sbjct: 355 APNDE 359


>gi|270014204|gb|EFA10652.1| hypothetical protein TcasGA2_TC016289 [Tribolium castaneum]
          Length = 619

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 79/232 (34%), Gaps = 21/232 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D     I ++S            + + GF      D R + F  +N  R  T++ SAT
Sbjct: 321 LMDMLEKKIVKLSVCRYLCMDEADRMIDLGFE----EDVRTI-FSYFNGQR-QTLLFSAT 374

Query: 532 PGSWELEQCQGIIVEQIIRPTGL-------VDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
                    +  +V+ +    G        V   VE      +V  + + +         
Sbjct: 375 MPKKIQNFARSALVKPVTINVGRAGAASMNVIQEVEYVKQEAKVVYLLECLQKTPPP--- 431

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+    K+  + + EYL  + +    +H      ER   +   R  + DVLV  ++  +
Sbjct: 432 VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERSRSVEAFRKHEKDVLVATDVASK 491

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           GLD P+   V   D           + +  IGR  R+    +       +  
Sbjct: 492 GLDFPDIQHVINYD-----MPDDVENYVHRIGRTGRSGKQGLATTFINKSND 538


>gi|5901872|gb|AAD55444.1|AF181659_1 BcDNA.GM05306 [Drosophila melanogaster]
          Length = 641

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 97/262 (37%), Gaps = 31/262 (11%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIR-SARTQVE 569
           C    T++ SAT  S +++    + +++ I+            L    + IR       E
Sbjct: 333 CKTRQTMLFSAT-MSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDRE 391

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   +          ++ V TK+ A  L   L    +R   +H  +   +R+E ++  +
Sbjct: 392 PILASLICRTFHDH-CMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFK 450

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
             + DVL+  ++   GLDI     V            +    I  +GR AR   + +   
Sbjct: 451 EEQIDVLIATDVAARGLDIVGVKTVINF-----VMPITTEHYIHRVGRTARAGRAGI--- 502

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK----HNINPQSVKEKIMEVIDPILLEDAATTN 745
                 S+ LA  E  R+  K +  N +    + I P  + EK    +  +  E     +
Sbjct: 503 ------SVSLA-GEKERKIVKDIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILD 555

Query: 746 ISIDAQQLSLSKKKGKAHLKSL 767
                +QL+ ++++     + L
Sbjct: 556 EEQAERQLAKTEQQLSKTERKL 577


>gi|74656036|sp|Q58Z64|DHH1_CRYNV RecName: Full=ATP-dependent RNA helicase VAD1; AltName:
           Full=Virulence-associated DEAD box protein 1
 gi|54873506|gb|AAV41010.1| virulence associated DEAD box protein 1 [Cryptococcus neoformans
           var. grubii]
 gi|55982655|gb|AAV69745.1| virulence-associated DEAD Box protein [Cryptococcus neoformans var.
           grubii]
          Length = 616

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 14/166 (8%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E+     + ++ + +    V+   ++           + +    Q    I +   +  
Sbjct: 235 PYEINLMDELTLKGVTQYYAYVEESQKVH--------CLNTLFSKLQINQSI-IFCNSTN 285

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L + + E      Y H++++   R  +  D R G    LV  +LL  G+DI    +
Sbjct: 286 RVELLAKKVTELGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVCSDLLTRGIDIQAVNV 345

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           V   D     F R+  S +  IGR+ R  +  + +   T+     L
Sbjct: 346 VINFD-----FPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNL 386


>gi|143456931|sp|Q6H7S2|RH8_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 8
 gi|49388093|dbj|BAD25226.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|215701408|dbj|BAG92832.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222623328|gb|EEE57460.1| hypothetical protein OsJ_07688 [Oryza sativa Japonica Group]
          Length = 508

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT             P  + +     + ++ I +    V+   ++         
Sbjct: 309 QILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKVH-------- 360

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   +    E L + + E      Y+H+++    R  +  D R 
Sbjct: 361 CLNTLFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 419

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F ++  + +  +GR+ R  +  + +  
Sbjct: 420 GACRNLVCTDLFTRGIDIQAVNVVINFD-----FPKTAETYLHRVGRSGRFGHLGLAVNL 474

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            T      L        R +Q    +   I PQ
Sbjct: 475 ITYEDRFNL-------YRIEQELGTEIKPIPPQ 500


>gi|58265490|ref|XP_569901.1| RNA helicase [Cryptococcus neoformans var. neoformans JEC21]
 gi|134108933|ref|XP_776581.1| hypothetical protein CNBC0740 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74686062|sp|Q5KJI2|DHH1_CRYNE RecName: Full=ATP-dependent RNA helicase DHH1
 gi|50259261|gb|EAL21934.1| hypothetical protein CNBC0740 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226133|gb|AAW42594.1| RNA helicase, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 625

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 14/166 (8%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E+     + ++ + +    V+   ++           + +    Q    I +   +  
Sbjct: 235 PYEINLMDELTLKGVTQYYAYVEESQKVH--------CLNTLFSKLQINQSI-IFCNSTN 285

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L + + E      Y H++++   R  +  D R G    LV  +LL  G+DI    +
Sbjct: 286 RVELLAKKVTELGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVCSDLLTRGIDIQAVNV 345

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           V   D     F R+  S +  IGR+ R  +  + +   T+     L
Sbjct: 346 VINFD-----FPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNL 386


>gi|332286324|ref|YP_004418235.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
 gi|330430277|gb|AEC21611.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
          Length = 477

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 11/193 (5%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINL 577
            +   ++ SAT         +G++ + I   +         VE     T+     D ++ 
Sbjct: 183 KQRQNLLFSATFSDEIRALSKGVLNDPIEISVARRNTASELVEQSVVLTEQAHKRDLLSH 242

Query: 578 AAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             ++    ++L+   TK  A  L E L +  +    +H       R   +   + GK  V
Sbjct: 243 IIRESGWHQVLVFTRTKHGANRLAEKLVKDGLSAAAIHGNKSQAARTRALAGFKDGKVAV 302

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTIT 694
           LV  ++   G+DI +   V   +             +  IGR  R  ++   +   D   
Sbjct: 303 LVATDIAARGIDIDQLPHVVNFE-----LPNVPEDYVHRIGRTGRAGSTGSAMSLVDRTE 357

Query: 695 KSIQLAIDETTRR 707
             +  AI++  +R
Sbjct: 358 IKLLSAIEKLIKR 370


>gi|315084648|gb|EFT56624.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
          Length = 630

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 570 DVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D  + I    Q     ++++   TKR  + L++ L +R  + R +H ++  + R + ++ 
Sbjct: 285 DKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKK 344

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            R G+  +LV  ++   G+D+     V   +         + + +  IGR  R     
Sbjct: 345 FRHGEATILVATDVAARGIDVTGVSHVINHEC-----PEDEKTYVHRIGRTGRAGAKG 397


>gi|268680470|ref|YP_003304901.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618501|gb|ACZ12866.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 417

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 96/317 (30%), Gaps = 41/317 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR---------LPSC 507
            P  L +         V +  + + +I      +  R     + GF          LPS 
Sbjct: 131 TPGRLLD--------HVSQGTINLKEIDTFVLDEADRM---LDMGFIKDIRKVIALLPSK 179

Query: 508 MDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
             N        + ++     +   P   E+ +            + LV+  V I   + +
Sbjct: 180 RQNLLFSATYSDEIKTLCASILKNPAVVEVARRN--------TSSELVNQRVIIVDCKRK 231

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
              +   I+    +  ++L+   TK  A  ++EYL +  I    +H       R + + D
Sbjct: 232 TALLGKLISEHKWK--QVLVFTRTKHHANKVSEYLSKIGISASAIHGNKSQSARTKALAD 289

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-V 686
            + G   VLV  ++   GLDI +   V  L+             +  IGR  R  N    
Sbjct: 290 FKSGSIKVLVATDIAARGLDIDQLPHVINLE-----LPNIAEDYVHRIGRTGRAGNEGEA 344

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
           I             I++     +K LE        P    +   E I             
Sbjct: 345 ISLVCVDEFDYLKGIEKLI---KKTLEREVVEGFEPDPTIKA--EPIQQGRGAKPQGQPK 399

Query: 747 SIDAQQLSLSKKKGKAH 763
             +       +K+ +  
Sbjct: 400 RREHAPREYVEKRREKK 416


>gi|226506900|ref|NP_001142117.1| hypothetical protein LOC100274281 [Zea mays]
 gi|194704910|gb|ACF86539.1| unknown [Zea mays]
 gi|194707190|gb|ACF87679.1| unknown [Zea mays]
          Length = 494

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 65/181 (35%), Gaps = 14/181 (7%)

Query: 524 TTIVVSAT-PGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T+  SAT P   E        +  +  I  + ++    +   VEI S  +Q  +    +
Sbjct: 271 QTLYWSATWPKEVEQLARNFLFDPYKVTIGSEDLKANHAIVQHVEILS-ESQKYNKLVNL 329

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G RIL+ + TK+  +  T  L         +H +    ER  ++ + + GK  +
Sbjct: 330 LEDIMDGSRILIFMDTKKGCDQTTRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPI 389

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +   ++   GLD+ +   V   D     F  S    +  IGR  R           T   
Sbjct: 390 MTATDVAARGLDVKDVKYVINYD-----FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 444

Query: 696 S 696
           +
Sbjct: 445 A 445


>gi|195332387|ref|XP_002032880.1| GM21012 [Drosophila sechellia]
 gi|194124850|gb|EDW46893.1| GM21012 [Drosophila sechellia]
          Length = 782

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 97/262 (37%), Gaps = 31/262 (11%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIR-SARTQVE 569
           C    T++ SAT  S +++    + +++ I+            L    + IR       E
Sbjct: 333 CKTRQTMLFSAT-MSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDRE 391

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   +          ++ V TK+ A  L   L    +R   +H  +   +R+E ++  +
Sbjct: 392 PILASLICRTFHDH-CMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFK 450

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
             + DVL+  ++   GLDI     V            +    I  +GR AR   + +   
Sbjct: 451 EEQIDVLIATDVAARGLDIVGVKTVINF-----VMPITTEHYIHRVGRTARAGRAGI--- 502

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK----HNINPQSVKEKIMEVIDPILLEDAATTN 745
                 S+ LA  E  R+  K +  N +    + I P  + EK    +  +  E     +
Sbjct: 503 ------SVSLA-GEKERKIVKDIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILD 555

Query: 746 ISIDAQQLSLSKKKGKAHLKSL 767
                +QL+ ++++     + L
Sbjct: 556 EEQAERQLAKTEQQLSKTERKL 577


>gi|171057308|ref|YP_001789657.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170774753|gb|ACB32892.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 479

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 106/282 (37%), Gaps = 20/282 (7%)

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT--PGSWELEQ 539
           Q++ +          + + GF LP        R   +      T++ SAT  P   +L Q
Sbjct: 162 QLNQVEYVVLDEADRMLDIGF-LPDLQ-----RILSYLPKTRQTLLFSATFSPEIKKLAQ 215

Query: 540 C--QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL--AAQQGLRILLTVLTKRMA 595
              Q  ++ ++ RP       VE R      +D    +      +   + ++ V +K  A
Sbjct: 216 SYLQDPLLVEVARPNATATN-VEQRFYSVTDDDKRRTVLHILRERSITQAIVFVNSKLGA 274

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
             L        +R   +H +    ER++ +   + G+ DVLV  ++   GLDI +   V 
Sbjct: 275 ARLARSFERDGLRTSALHGDKSQDERLKALDAFKRGEVDVLVATDVAARGLDIADLPAVF 334

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
             D        +    +  IGR  R   S + +   +   +  ++  E   +++ ++E  
Sbjct: 335 NFD-----IPFNAEDYVHRIGRTGRAGASGLAVSLVSHDDNRLVSDIEQLIKKKIEIE-A 388

Query: 716 KKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
            + N   +  +    E++D + + DA     S    + S+  
Sbjct: 389 IELNDE-RPRRPPRREIVDDVAVVDAPAPRYSRPPSRTSVDP 429


>gi|146284217|ref|YP_001174370.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri A1501]
 gi|145572422|gb|ABP81528.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri A1501]
          Length = 512

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 74/186 (39%), Gaps = 10/186 (5%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGL-VDPPVEIRSARTQVEDVYDEINLAA 579
           +  T++ SAT P S E      +   Q +R   L  D  +E R      E   D +    
Sbjct: 230 KRQTLLFSATYPASIEQLAASFMRAPQQVRVESLHTDSQIEQRFYEIDPEQRLDAVARLL 289

Query: 580 Q--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              +    +    TK+  ++L EYL  + I    ++ +++  +R +++         VLV
Sbjct: 290 ASFRPESCVAFCFTKQQCQELVEYLNGKGISAAALNGDLEQRDRDQVLAMFANRSLSVLV 349

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI    +V  ++  ++  +      +  IGR  R  N  +        ++ 
Sbjct: 350 ATDVAARGLDIDALDMVINVELARDPEIH-----VHRIGRTGRAGNQGLAASLVAPAEAH 404

Query: 698 Q-LAID 702
           +  AI+
Sbjct: 405 RAQAIE 410


>gi|126654509|ref|XP_001388425.1| ATP-dependent RNA helicase [Cryptosporidium parvum Iowa II]
 gi|126117365|gb|EAZ51465.1| ATP-dependent RNA helicase, putative [Cryptosporidium parvum Iowa
           II]
          Length = 406

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 11/131 (8%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++   +    E L + + E      Y+H+ +    R  +  D R G    LV  +L+
Sbjct: 271 NQAIIFCNSVTRVELLAKKITELGSSCFYIHARMLQSHRNRVFHDFRNGACRCLVSSDLI 330

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
             G+DI    +V   D  K        + +  IGR+ R  +  + +   T      L   
Sbjct: 331 TRGIDIQSVNVVINFDFPKYS-----ETYLHRIGRSGRFGHLGLAINLITYEDRYNL--- 382

Query: 703 ETTRRREKQLE 713
               R EK+L 
Sbjct: 383 ---YRIEKELA 390


>gi|47224688|emb|CAG00282.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 497

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 5/99 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V  K + +DL+  +  + I V+ +H + +  +R E +R+ R GK  +LV  +L  
Sbjct: 334 KVLIFVGRKILVDDLSSDMCLQGISVQSLHGDREQCDREEALREFREGKVRILVATDLAS 393

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
            GLD+ +   V   D     F R+    +  +GR  R  
Sbjct: 394 RGLDVLDITHVFNYD-----FPRNIEEYVHRVGRTGRAG 427


>gi|67623565|ref|XP_668065.1| ATP-dependent RNA helicase [Cryptosporidium hominis TU502]
 gi|54659251|gb|EAL37837.1| ATP-dependent RNA helicase [Cryptosporidium hominis]
          Length = 361

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 11/131 (8%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++   +    E L + + E      Y+H+ +    R  +  D R G    LV  +L+
Sbjct: 226 NQAIIFCNSVTRVELLAKKITELGSSCFYIHARMLQSHRNRVFHDFRNGACRCLVSSDLI 285

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAID 702
             G+DI    +V   D  K        + +  IGR+ R  +  + +   T      L   
Sbjct: 286 TRGIDIQSVNVVINFDFPKYS-----ETYLHRIGRSGRFGHLGLAINLITYEDRYNL--- 337

Query: 703 ETTRRREKQLE 713
               R EK+L 
Sbjct: 338 ---YRIEKELA 345


>gi|302891875|ref|XP_003044819.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256725744|gb|EEU39106.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 551

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 14/184 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDP--------PVEIRSARTQVEDVYDEI 575
            T++ SAT            + + I    G +D          VE+ +   + + +   +
Sbjct: 316 QTLMWSATWPKEVRALATDFLQDFIQVNIGSMDLAANHRITQIVEVVTDMEKRDRMIKHL 375

Query: 576 NLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               +    +IL+ V TKR+A+D+T +L +       +H + +  ER  ++   +  K  
Sbjct: 376 EKVMENKENKILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKSAKSP 435

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           ++V  ++   G+D+     V   D     +  +    I  IGR  R       +   T  
Sbjct: 436 IMVATDVASRGIDVRNITHVLNYD-----YPNNSEDYIHRIGRTGRAGAKGTAITFFTTD 490

Query: 695 KSIQ 698
              Q
Sbjct: 491 NQKQ 494


>gi|253991618|ref|YP_003042974.1| ATP-dependent RNA helicase RhlB [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783068|emb|CAQ86233.1| ATP-dependent RNA helicase [Photorhabdus asymbiotica]
          Length = 428

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 105/348 (30%), Gaps = 79/348 (22%)

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG+ +  + +   Y  +H +      N     I                    + L  +I
Sbjct: 57  TGKTLAFLASAFHYLLTHPIAKGRQTNQPRALIMA----------------PTRELAVQI 100

Query: 427 TYDLEMLET-----TGSCQSIENYSRYLTGRNPGE-----PPPTLFEYIPEDSLLFVDES 476
             D E L        G     + Y + L     G          L +Y          + 
Sbjct: 101 YSDAEDLAQTTGLKMGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDY--------TKQG 152

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEE---------- 517
           H+ +  +  +   +  R   L   GF         R+PS  +   L F            
Sbjct: 153 HINLNAVQVVVLDEADRMYDL---GFIKDIRWLFRRMPSANERMNLLFSATLSYRVRELA 209

Query: 518 WNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           +  +      V   P    L++    I E++  P+      +        ++ + +E   
Sbjct: 210 FEQM-NHAEYVEVEP----LQKTGHRIREELFYPSNEEKMRL--------LQTLLEEEWP 256

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                 R ++   TK   ED+  +L     RV  +  +V   +R+ I+ +   G  D+LV
Sbjct: 257 -----DRCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEEFSNGNIDILV 311

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             ++   GL IP    V   D             +  IGR  R   S 
Sbjct: 312 ATDVAARGLHIPSVTHVFNYD-----LPDDCEDYVHRIGRTGRAGESG 354


>gi|164656240|ref|XP_001729248.1| hypothetical protein MGL_3715 [Malassezia globosa CBS 7966]
 gi|159103138|gb|EDP42034.1| hypothetical protein MGL_3715 [Malassezia globosa CBS 7966]
          Length = 885

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 65/183 (35%), Gaps = 15/183 (8%)

Query: 524 TTIVVSAT-PGSWE---LEQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEI 575
            T++ SAT P   E    +  +   +E I+    +V   +    E+R   ++   + + +
Sbjct: 436 QTVLFSATFPKPMESLARKMLRHEPLEVIVGGRSVVAAEIRQIVEVRPDSSKFHRLLEIL 495

Query: 576 NLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                     R L+ V  +  A++L   L +R      +H      +R   + D + G  
Sbjct: 496 GQLYHHDEDARTLIFVDRQDAADELMHMLMKRGYPTMSLHGGKDQADRDTTLADFKAGIV 555

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +L   ++   GLD+ +  LV   D             +   GR  R  N    +   T 
Sbjct: 556 PILTATSVAARGLDVKQLKLVVNYDV-----PNHLEDYVHRAGRTGRAGNQGTCVTFITP 610

Query: 694 TKS 696
            + 
Sbjct: 611 EQD 613


>gi|156935889|ref|YP_001439805.1| ATP-dependent RNA helicase RhlB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|189040029|sp|A7MQI2|RHLB_ENTS8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|156534143|gb|ABU78969.1| hypothetical protein ESA_03777 [Cronobacter sakazakii ATCC BAA-894]
          Length = 421

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/339 (17%), Positives = 104/339 (30%), Gaps = 61/339 (17%)

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG+ +  + +   Y  SH       +N     I                    + L  +I
Sbjct: 57  TGKTMAFLTSTFHYLLSHPAAENRQVNQPRALIMA----------------PTRELAVQI 100

Query: 427 TYDLEMLET-----TGSCQSIENYSRYLTGRNPGE-----PPPTLFEYIPEDSLLFVDES 476
             D E L        G     + Y + L     G          L +Y          ++
Sbjct: 101 HSDAEPLAEATGIKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDY--------TKQN 152

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLRPTTIV 527
           HV +  I  +   +  R   L   GF         R+P+  +   + F      R   + 
Sbjct: 153 HVNLGAIQVVVLDEADRMYDL---GFIKDIRWLFRRMPAATERLNMLFSATLSYRVRELA 209

Query: 528 VSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                 +  +E   +     +I           ++R  +T +E+         +   R +
Sbjct: 210 FEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEE---------EWPDRAI 260

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +   TK   ED+  +L     RV  +  +V   +R+ I+ +   G  D+LV  ++   GL
Sbjct: 261 IFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGL 320

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            IP    V   D             +  IGR  R   S 
Sbjct: 321 HIPAVTHVFNYD-----LPDDCEDYVHRIGRTGRAGASG 354


>gi|152994240|ref|YP_001339075.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150835164|gb|ABR69140.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 418

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 66/176 (37%), Gaps = 28/176 (15%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS---ARTQVEDVYDEINLAAQ 580
            T+  SAT         + ++ +            +E+ S     TQVE     ++   +
Sbjct: 181 QTLFFSATFNDEIFALSKTLLKD---------PQLIEVNSRNTTATQVEQTIYAVDQDRK 231

Query: 581 QGL-----------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
             L           ++L+   TK+ A++L + + +  I  + +H +     R  ++ D +
Sbjct: 232 SALLSFLIGSKNWQQVLIFTRTKQGADELAKEMEKDGIATQSIHGDKSQGARDRVLADFK 291

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            GK   LV  ++   G+DI +   V   +        +    I  IGR  R  ++ 
Sbjct: 292 AGKVRALVATDVAARGIDIEQLQYVVNHE-----LPYNAEDYIHRIGRTGRAGSTG 342


>gi|115447545|ref|NP_001047552.1| Os02g0641800 [Oryza sativa Japonica Group]
 gi|49388094|dbj|BAD25227.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113537083|dbj|BAF09466.1| Os02g0641800 [Oryza sativa Japonica Group]
 gi|218191254|gb|EEC73681.1| hypothetical protein OsI_08237 [Oryza sativa Indica Group]
          Length = 483

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT             P  + +     + ++ I +    V+   ++         
Sbjct: 284 QILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKVH-------- 335

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   +    E L + + E      Y+H+++    R  +  D R 
Sbjct: 336 CLNTLFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 394

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F ++  + +  +GR+ R  +  + +  
Sbjct: 395 GACRNLVCTDLFTRGIDIQAVNVVINFD-----FPKTAETYLHRVGRSGRFGHLGLAVNL 449

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            T      L        R +Q    +   I PQ
Sbjct: 450 ITYEDRFNL-------YRIEQELGTEIKPIPPQ 475


>gi|330865776|gb|EGH00485.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 500

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|289625029|ref|ZP_06457983.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 516

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|257483568|ref|ZP_05637609.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 514

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|193890969|gb|ACF28638.1| translation initiation factor 4A [Amphidinium carterae]
          Length = 331

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 72/188 (38%), Gaps = 16/188 (8%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPT-----GLVDPPVEIRSARTQVEDVYDEI 575
              + SAT     L+     +   V  +++       G+    V I     +++ + D  
Sbjct: 149 QVCLFSATMAPEVLDLTSKFMRDPVRILVKKDELTLEGIHQYYVAIEKEDWKLDTLCDLY 208

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   + ++    +R  + L   L +R+  V  +H+++   ER  ++++ R G   V
Sbjct: 209 ECVTIS--QCIIYSNYRRKVDSLAHELSKRDFAVSIIHADLDQEERNLVMKEFRNGATRV 266

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTIT 694
           L+  +LL  G+D+ +  LV   D   +       + +  IGR+ R     V I +     
Sbjct: 267 LISTDLLARGIDVQQVSLVINYDMPMD-----MENYLHRIGRSGRFGRKGVAINFVTNRE 321

Query: 695 KSIQLAID 702
                 I+
Sbjct: 322 GRTMKEIE 329


>gi|14532476|gb|AAK63966.1| At2g45810/F4I18.21 [Arabidopsis thaliana]
 gi|27363412|gb|AAO11625.1| At2g45810/F4I18.21 [Arabidopsis thaliana]
          Length = 528

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  D R G    LV  +L   G
Sbjct: 395 IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRG 454

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +DI    +V   D     F R+  S +  +GR+ R  +  + +   T     ++
Sbjct: 455 IDIQAVNVVINFD-----FPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKM 503


>gi|320164192|gb|EFW41091.1| nucleolar RNA helicase 2 [Capsaspora owczarzaki ATCC 30864]
          Length = 793

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 20/205 (9%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
             + +   + D + + +    R ++   TK  A DL             +H ++   +R 
Sbjct: 425 PWQERANAIGDVVRVYSGSHGRCMVFASTKEEANDLALNGRIAG-ETHVLHGDIAQKQRE 483

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             +   R GKF  LV  ++   GLDIPE  LV   +   +       + I   GR  R  
Sbjct: 484 ITLAGFRSGKFRCLVATDVAARGLDIPEVELVIQTEPPIDV-----ETYIHRAGRTGRAG 538

Query: 683 NSK-VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
            S   IL+     +S+   I+   R     +   +     PQ +              DA
Sbjct: 539 KSGTCILFYKPQQESLVRRIEGKAR-----MAFKRIGPPQPQDIV--------SASANDA 585

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKS 766
           A +   +      L  +  +  +  
Sbjct: 586 ARSLAKVSPAVYPLFHQAAEEVIAR 610


>gi|306843833|ref|ZP_07476431.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
 gi|306275911|gb|EFM57627.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
          Length = 482

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 16/191 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVED------VYD 573
            T+  SAT    E+ +     +   +R            V  R  ++  +D      + D
Sbjct: 180 QTLFFSAT-MPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRD 238

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I          ++    K+   +L   L         +H ++    R+ ++   + GK 
Sbjct: 239 LIQSEGDTLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKL 298

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIP+   V   D             +  IGR  R   S       T 
Sbjct: 299 RLLVASDVAARGLDIPDVSHVFNFDVPI-----HAEDYVHRIGRTGRAGRSGKAFTIVTS 353

Query: 694 TKSIQLAIDET 704
           + +  LA  E+
Sbjct: 354 SDTKYLAAIES 364


>gi|212274773|ref|NP_001130659.1| hypothetical protein LOC100191761 [Zea mays]
 gi|194689766|gb|ACF78967.1| unknown [Zea mays]
          Length = 598

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 75/193 (38%), Gaps = 23/193 (11%)

Query: 524 TTIVVSATPGSWELEQCQ------------GIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            +++ SAT  SW  +  +            G   E++     L   P+   S RT + D+
Sbjct: 124 QSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTTTSKRTVLSDL 183

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                    +G + ++   TK+ A++++  L   +I    +H ++   +R   +   R G
Sbjct: 184 I----TVYAKGGKTIVFTRTKKDADEVSLALT-NSIASEALHGDISQHQRERTLNGFRQG 238

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYA 690
           KF VLV  ++   GLDIP   L+               + +   GR  R   +   IL  
Sbjct: 239 KFTVLVATDVAARGLDIPNVDLII-----HYELPNDPETFVHRSGRTGRAGKAGTAILMF 293

Query: 691 DTITKSIQLAIDE 703
            +  K    +++ 
Sbjct: 294 TSSQKRTVKSLER 306


>gi|159463584|ref|XP_001690022.1| DEAD-box RNA helicase [Chlamydomonas reinhardtii]
 gi|158284010|gb|EDP09760.1| DEAD-box RNA helicase [Chlamydomonas reinhardtii]
          Length = 513

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 5/115 (4%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G RIL+ V TKR  ++L   L         +H +    ER  ++++ + G   +++  ++
Sbjct: 354 GRRILIFVETKRGCDELVRQLRTDGYPALGLHGDKSQQERDWVLQEFKNGTHPIMLATDV 413

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
              GLD+ +  +V   D  K     +    +  IGR  R   +       T   +
Sbjct: 414 AARGLDVKDIKVVVNYDMPK-----TAEDYVHRIGRTGRAGATGTAYSFFTNGDA 463


>gi|116515159|ref|YP_802788.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116257013|gb|ABJ90695.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 576

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 73/208 (35%), Gaps = 30/208 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            +  T + SAT            I+ +I R        ++I+S      D+     +   
Sbjct: 179 RKHQTALFSAT---------MPNIIRRISRRFMNTPKEIKIQSTGITRPDIQQSYWIVRG 229

Query: 581 QGL-------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +                 ++ V TK    +++E L +       ++ ++  + R + +  
Sbjct: 230 RKTDALIRFLEVEDFSATIIFVRTKNATLEVSEALEKNGYNSAALNGDMNQVLREQTLER 289

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-V 686
           L+ GK D+L+  ++   GLD+     V   D           S +  IGR  R   +   
Sbjct: 290 LKNGKLDILIATDVAARGLDVDRISFVINYD-----IPTDAESYVHRIGRTGRAGRTGRA 344

Query: 687 ILYADTITKSIQLAIDETTRR--REKQL 712
           +L+ +     +   I+   +    E QL
Sbjct: 345 LLFVEYREYRLLKNIERIIKHPIHEIQL 372


>gi|15225898|ref|NP_182105.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|108861901|sp|Q94BV4|RH6_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 6
 gi|3386613|gb|AAC28543.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|330255510|gb|AEC10604.1| DEAD-box ATP-dependent RNA helicase 6 [Arabidopsis thaliana]
          Length = 528

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  D R G    LV  +L   G
Sbjct: 395 IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRG 454

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +DI    +V   D     F R+  S +  +GR+ R  +  + +   T     ++
Sbjct: 455 IDIQAVNVVINFD-----FPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKM 503


>gi|10039327|dbj|BAB13306.1| PL10-related protein CnPL10 [Hydra vulgaris]
          Length = 628

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 585 ILLTVLTKRMAEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            L+ V TKR A+ L ++L     N     +H +    ER + +   R+G   +LV   + 
Sbjct: 432 TLVFVETKRGADALEQFLFRCPENYHATSIHGDRHQREREQALASFRVGTTPILVATAVA 491

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLA 700
            +GLDIP    V   D             +  IGR  R  ++   +  + D      +  
Sbjct: 492 AKGLDIPNVKHVINFD-----MPSDIEEYVHRIGRTGRAGHTGLAISFFNDKNRNVARDL 546

Query: 701 ID 702
           +D
Sbjct: 547 MD 548


>gi|158312770|ref|YP_001505278.1| DEAD/DEAH box helicase domain-containing protein [Frankia sp.
           EAN1pec]
 gi|158108175|gb|ABW10372.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec]
          Length = 671

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 78/209 (37%), Gaps = 23/209 (11%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGSWE------LEQCQGIIVEQI 548
            + + GF LP        R   +   +  T++ SAT PG         + +   +  EQ 
Sbjct: 261 EMLDLGF-LPDVE-----RILAFLPEQRHTMLFSATMPGPVISLARRFMTRPVHVRAEQP 314

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR--ILLTVLTKRMAEDLTEYLYERN 606
                + +    +   R    D  + +    Q   R   ++ V T+R A+ + E L  R 
Sbjct: 315 DEGRTVPNTQQHV--FRAHALDKMEVLARVLQAESRGLAMVFVRTRRTADKVAEDLARRG 372

Query: 607 IRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLR 666
                +H ++   +R + +R  R GK DVLV  ++   G+D+     V            
Sbjct: 373 FAAAPVHGDLGQGQREQALRAFRAGKVDVLVATDVAARGIDVGGVTHVVNYQC-----PE 427

Query: 667 SKTSLIQTIGRAARNVNSKV-ILYADTIT 694
            + + +  IGR  R   S V + + D   
Sbjct: 428 DEHAYLHRIGRTGRAGGSGVAVTFVDWDD 456


>gi|213161891|ref|ZP_03347601.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 346

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L E L    I   Y+  E+  ++R E I+ L  G+ +VLV  ++  
Sbjct: 152 RSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAA 211

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ--LAI 701
            G+DIP+   V   D  + G   +    I   GRA R   +  ++ A      ++    I
Sbjct: 212 RGIDIPDVSHVINFDMPRSG--DTYLHRIGRTGRAGRKGTAISLVEAHDHLLLLKIGRYI 269

Query: 702 DETTRRREK 710
           +E  + R  
Sbjct: 270 EEPLKARVI 278


>gi|149567279|ref|XP_001507308.1| PREDICTED: similar to DEAD Box Protein 5, partial [Ornithorhynchus
           anatinus]
          Length = 472

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 262 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCSNRDEKFQ 315

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L     +V  +  E+   +R  +I   R G
Sbjct: 316 ALCNLYGAITIAQAMIFCHTRKTAGWLAGELSREGHQVALLSGEMMVEQRAAVIERFRAG 375

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 376 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 434

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 435 MIDSKHSMNIL----NR---IQEHFNKK 455


>gi|324329406|gb|ADY24666.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 481

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 67/185 (36%), Gaps = 11/185 (5%)

Query: 525 TIVVSAT-PGSWE-LEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINL--AA 579
           T++ SAT P   E L +        I I+  G+    +E        ++    +      
Sbjct: 180 TMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGVTTDKIEHVLFEVIEDEKLSLLKDVTTI 239

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +     ++   T+   + +   L   N     +H  +   +R E++ D R GKF  LV  
Sbjct: 240 ENPDSCIIFCRTQDNVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQ 698
           ++   G+DI     V   D   E     K S +   GR  R  NS K I +         
Sbjct: 300 DVAARGIDIDNITHVINYDIPLE-----KESYVHRTGRTGRAGNSGKAITFITPYENRFL 354

Query: 699 LAIDE 703
             I+E
Sbjct: 355 EEIEE 359


>gi|149926712|ref|ZP_01914972.1| Helicase [Limnobacter sp. MED105]
 gi|149824641|gb|EDM83857.1| Helicase [Limnobacter sp. MED105]
          Length = 539

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 86/272 (31%), Gaps = 30/272 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         V +  + + Q+  +   +  R     + GF LP       L   
Sbjct: 153 TPGRLLD--------HVQQKSINLGQVQVLVLDEADRM---LDMGF-LPDLQRIINLLP- 199

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVY 572
                    ++ SAT      +  +  +V     ++ R     +   ++  A    ED  
Sbjct: 200 ----KTRQNLLFSATFSPEIQKLAKSFMVSPTLIEVARRNATSENIKQVIFALDSEEDKR 255

Query: 573 DEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             +    Q     ++++   TK     L  +L +  +    +H +   +ER + +   + 
Sbjct: 256 MAVCHLIQSKALSQVIVFSNTKLGTARLARHLEKEGVSSTAIHGDKTQIERTKSLEAFKA 315

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G+  VLV  ++   GLDI +   V   D        +    +  IGR  R          
Sbjct: 316 GEVTVLVATDVAARGLDIADLPCVINYD-----LPTTPEDYVHRIGRTGRAGAKGTAYSF 370

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINP 722
                  + A+ +  +   K     +     P
Sbjct: 371 VVKRD--ERALKDIEKLIGKAFVREELEGFVP 400


>gi|308810755|ref|XP_003082686.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
 gi|116061155|emb|CAL56543.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
          Length = 448

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 98/239 (41%), Gaps = 31/239 (12%)

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           P  L++  ++++  ++  ++ +    ++       ++   TK+ A  L   +    ++  
Sbjct: 54  PEHLIEEVLKLKPNQSAQKEAFLMAIVSRSFDKSTIVFTKTKQQAHRLKIIMGLSKVKAG 113

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H ++   +R+  + D R G+   L+  ++   GLDIP    V   DA K     +  S
Sbjct: 114 ELHGDMTQTQRLAALDDFRTGRVTHLIATDVAARGLDIPSVDAVISYDAPK-----TLAS 168

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEH---NKKHNINPQSVKE 727
            +  +GR AR       L            ++E+ R+  K +     N K  + P ++  
Sbjct: 169 YLHRVGRTARAGKKGTALTF----------MEESDRKLVKTVAKRGANLKARVVPGNIVA 218

Query: 728 KIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
           +  + I+  ++E+        +  +  L+K + +A+          A++ L  E AA I
Sbjct: 219 EWHKKIE--VMEEKIVHINYEERTERQLAKAEMEAN---------KASNLL--EHAAEI 264


>gi|51258614|gb|AAH78667.1| DDX42 protein [Homo sapiens]
          Length = 919

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 414 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 473

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 474 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 532

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 533 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 587

Query: 696 S 696
           S
Sbjct: 588 S 588


>gi|73965187|ref|XP_537598.2| PREDICTED: similar to DEAD box polypeptide 42 protein isoform 1
           [Canis familiaris]
          Length = 696

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 433 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 492

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 493 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 606

Query: 696 S 696
           S
Sbjct: 607 S 607


>gi|210614158|ref|ZP_03290078.1| hypothetical protein CLONEX_02291 [Clostridium nexile DSM 1787]
 gi|210150802|gb|EEA81810.1| hypothetical protein CLONEX_02291 [Clostridium nexile DSM 1787]
          Length = 530

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 65/170 (38%), Gaps = 16/170 (9%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      E+ +      + +      +    +     E+R  + + E +   +
Sbjct: 180 QTVLFSATMPKAIMEITKKFQKNAQMVKVTKKELTVPNIEQFYYEVRP-KNKEEVLTRLL 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++   +    ++   TK+  + L   L  R      +H ++K  +R  +++  R GK D+
Sbjct: 239 DIYTPK--LSVIFCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           LV  ++   G+D+ E   V   D       +     +  IGR  R     
Sbjct: 297 LVATDVAARGIDVDEVEAVFNYD-----LPQDDEYYVHRIGRTGRAGRVG 341


>gi|170744521|ref|YP_001773176.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168198795|gb|ACA20742.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 499

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+   TK  A+ +   L +  I    +H      +R   +   R G   VLV  ++  
Sbjct: 249 RVLVFTRTKHGADRVVRGLEKAGIGSAAIHGNKSQPQRERALAAFRAGICRVLVATDIAA 308

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAID 702
            G+D+     V   D           + +  IGR AR       I + +   ++    I+
Sbjct: 309 RGIDVEGVSHVVNFD-----LPNVPEAYVHRIGRTARAGADGLAISFCNDEERAYLRDIE 363

Query: 703 ETTRRREKQLE 713
             TR++  ++ 
Sbjct: 364 RLTRQKVPEMA 374


>gi|119775538|ref|YP_928278.1| DEAD-box ATP dependent DNA helicase [Shewanella amazonensis SB2B]
 gi|119768038|gb|ABM00609.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
           SB2B]
          Length = 407

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 101/264 (38%), Gaps = 28/264 (10%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++ + + L +D    T+ Q+       F     + + GF      + R L   
Sbjct: 132 TPGRLLDHLKKRT-LRID----TVSQLV------FDEADRMLDMGFE----DEIRALV-- 174

Query: 517 EWNCLRPTTIVVSATPGS--WELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYD 573
           +       T + SAT G   W+L +      + + I       P +E +  +   E  ++
Sbjct: 175 KKLAKTRQTALFSATLGDNVWQLAKSLMDSPKLLEIAAAKDAKPLIEEQVYQLDSERKFE 234

Query: 574 EINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            I     +    ++L+   TK  A+ LT  L E       MH+++   +R + + D +  
Sbjct: 235 FICHLLGKNSWSQVLIFSRTKEGADKLTAKLVEAGHSAVAMHADLSQRQREQNLADFKAA 294

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYA 690
              VLV  ++   GLDI     +  ++         K   +  IGR  R  ++   I   
Sbjct: 295 DARVLVATDVAARGLDIQALPCIINVE-----LPFKKEDYVHRIGRTGRAGSAGLAISLL 349

Query: 691 DTITKSIQLAIDETTRRREKQLEH 714
           D   + + +A++    RR  Q  +
Sbjct: 350 DVADEPLLVALEHYLDRRLPQQWY 373


>gi|326916320|ref|XP_003204456.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
           [Meleagris gallopavo]
          Length = 571

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 85/224 (37%), Gaps = 28/224 (12%)

Query: 496 TLAEYGF---RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
            + + GF    +   +D RP R          T++ SAT         +  +   +I   
Sbjct: 325 KMLDMGFEPQIMKILIDVRPDR---------QTVMTSATWPDGVRRLAKSYLRNPMIVYV 375

Query: 553 GLVDPPVEIRSARTQV--------EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           G +D    + +   +V        +   +    + +   + ++ V  K  A+D+   L  
Sbjct: 376 GTLD-LAAVNTVEQKVVVINEEEKKAFMENFIDSMKPKDKAIIFVGKKSTADDIASDLGV 434

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
           + + V+ +H + +  +R + + D + GK  +LV  +L   GLD+ +   V   D     F
Sbjct: 435 KGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLASRGLDVHDITHVFNFD-----F 489

Query: 665 LRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR 706
            R+    +  +GR  R   +   V L      K+    ID   R
Sbjct: 490 PRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASELIDILQR 533


>gi|320581153|gb|EFW95374.1| ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 747

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 25/242 (10%)

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQ-GLRILLTVLTKRMAEDLTEYLYERNIRV 609
            + LV   V IR   +    +   I         R+++ V  K MA  L   L    ++V
Sbjct: 455 ASELVQEFVRIRKRESSKPALLFNILSEMDGLHSRVIVFVSRKEMAHRLRISLGLLGLKV 514

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             +H  +   +R++ I D +     +L+  +L   GLDIP+  LV   D  K     +  
Sbjct: 515 SELHGSLTQEQRLKAIVDFKNLTVPILICTDLAARGLDIPKIELVINFDMPK-----TYE 569

Query: 670 SLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
             +  +GR AR     + +     +   +  + E       +    +      +++   +
Sbjct: 570 IYLHRVGRTARAGRKGLSISFVGESSQDRNIVKE-----AIKQVETENAG---KAIGRNV 621

Query: 730 M----EVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAAR 785
                E I  IL E  +     ++ ++      K +  +K     M      LNFE+  +
Sbjct: 622 NWENVEKIHRILQEKESVIFDVLNEEKQEKELLKAEQEIKKGEN-M------LNFEQEIK 674

Query: 786 IR 787
            R
Sbjct: 675 SR 676


>gi|315122206|ref|YP_004062695.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495608|gb|ADR52207.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 459

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 74/190 (38%), Gaps = 14/190 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-----QIIRPTGLVDPP----VEIRSARTQVEDVYDE 574
            T++ SAT  + EL++     ++     ++  P    +      V      ++   +  +
Sbjct: 179 QTLLFSAT-MTEELQKVSEKFLQNPKRIEVNTPYSTAETIEHCFVATYPQYSKKFGLVQK 237

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +          ++    K+    L   L ++   V  +H  +    RI+I+   + G   
Sbjct: 238 LIREQDAIKNAIIFCNQKKDVASLCCALEKQGFSVCAIHGNMDQRSRIKILDSFKEGTIQ 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI- 693
           ++V  +L   GLDIP+ G V   D        +    I   GRA R+  +  ++ ++ + 
Sbjct: 298 LMVASDLAARGLDIPDVGHVFNFDVPNR--PENYIHRIGRTGRAGRSGKAFTLVTSEDVK 355

Query: 694 -TKSIQLAID 702
              +I+  I+
Sbjct: 356 YIDAIEKLIE 365


>gi|300811569|ref|ZP_07092053.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497429|gb|EFK32467.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 453

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 5/100 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
              L+   TK+M ++L +YL ++ ++V  +H  +   ER   +R++R G++  +V  +L 
Sbjct: 245 YLALVFANTKQMVDELADYLTKQGLKVAKIHGGITERERKRTLREVRAGQYQYVVASDLA 304

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             G+D+P   LV   +  K+        +I  IGR  RN 
Sbjct: 305 ARGIDLPGVNLVINYEIPKD-----LEFIIHRIGRTGRNG 339


>gi|317132682|ref|YP_004091996.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315470661|gb|ADU27265.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 435

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 85/255 (33%), Gaps = 32/255 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         +++ HV +  +S     +  R     + GF       +   +  
Sbjct: 132 TPGRLLD--------LMNQRHVDLSHVSYFVLDEADRM---LDMGFI------HDVHKVV 174

Query: 517 EWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIR----SARTQVE 569
           E       T++ SAT  P    L         Q+ + P       VE +      + +  
Sbjct: 175 EKLPQNRQTLLFSATMPPDIARLADKLLKNPAQVSVAPVSSTAETVEQKLFYVDKKNKKH 234

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   +  A      +L+   TK  A  + E+L +  I  + +H       R + +R+ +
Sbjct: 235 LLVHLLKTADM--ESVLVFSRTKHGANKIVEHLEKAGIPSKAIHGNKSQSARQQALREFK 292

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
             K  VLV  ++   G+D+ E   V   D   E       + +  IGR  R   S     
Sbjct: 293 SRKIHVLVATDIAARGIDVTELSHVINYDLPNE-----PETYVHRIGRTGRAGQSGMAFS 347

Query: 689 YADTITKSIQLAIDE 703
           + D         I+ 
Sbjct: 348 FCDEEEHDYLRTIER 362


>gi|255717290|ref|XP_002554926.1| KLTH0F17050p [Lachancea thermotolerans]
 gi|238936309|emb|CAR24489.1| KLTH0F17050p [Lachancea thermotolerans]
          Length = 478

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 1/112 (0%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L +   +V  +H +++  ER  +I D R G+  VL+  N+L  G
Sbjct: 330 IIFVQTKQTANVLYAKLKQAGHQVSILHGDLQASERDRLIDDFREGRSKVLITTNVLARG 389

Query: 646 LDIPECGLVAILDADKEGFLRSKTS-LIQTIGRAARNVNSKVILYADTITKS 696
           +DIP   +V   D       ++  S  I  IGR  R   + V +      KS
Sbjct: 390 IDIPTVSMVVNYDLPTTFQGKADPSTYIHRIGRTGRFGRTGVAISFVHDKKS 441


>gi|261368147|ref|ZP_05981030.1| cold-shock DEAD box protein A [Subdoligranulum variabile DSM 15176]
 gi|282569910|gb|EFB75445.1| cold-shock DEAD box protein A [Subdoligranulum variabile DSM 15176]
          Length = 395

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 8/139 (5%)

Query: 569 EDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           + + D   +   +G  R+++   TK     L   L   N  V  +H ++   ER  I+  
Sbjct: 227 DKLADAAQIIISEGYKRVMIFCNTKYNTGMLANQLARLNFNVDCLHGDLSQAERNRIMTR 286

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + G+  VLV  ++   G+D+ +   V   D  +E            IGR  R       
Sbjct: 287 FKAGEIAVLVATDVAARGIDVSDVDAVINYDVPEEN-----EHYTHRIGRTGRARKEGAS 341

Query: 688 LYADTITKSIQLAIDETTR 706
               T  +  Q  +D+  R
Sbjct: 342 YLFYTKEE--QKRVDQLLR 358


>gi|126344320|ref|XP_001381629.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           [Monodelphis domestica]
          Length = 818

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 589 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 648

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 649 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 706

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 707 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 761

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 762 AITFLTKEDSAVFYELKQAILES 784


>gi|212636948|ref|YP_002313473.1| ATP-dependent RNA helicase SrmB [Shewanella piezotolerans WP3]
 gi|212558432|gb|ACJ30886.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 410

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 84/229 (36%), Gaps = 30/229 (13%)

Query: 522 RPTTIVVSATPGSWELEQCQ-GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
           R  T++ SAT     LE    G    Q++     ++     RS + ++       +    
Sbjct: 181 RKQTMLFSAT-----LEGSDVGRFSHQLLSNPVKLEAEAP-RSEKAKIHQWVHIADDREH 234

Query: 579 ----------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
                      ++  R ++ V T+     L   L ++ I   +M  +++   R + +   
Sbjct: 235 KFALLYAILQQEEVERAIVFVKTREAVASLDGLLQKQGITCSFMRGDMEQKARFQALGRF 294

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
             G+ +VL+  ++   G+D+ +   V   D  +     S  + +  IGR  R       +
Sbjct: 295 TKGEVNVLLATDVAARGIDVDDITHVINFDMPR-----SADTYVHRIGRTGRAGAKGTAI 349

Query: 689 -----YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
                +   +   I+  I++  +RR  +    K     P   K+K+ + 
Sbjct: 350 SLVEAHDIRVVGKIERYIEQPLKRRFIKDLRPKNKEAKPPG-KKKVKDT 397


>gi|330886235|gb|EGH20136.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. mori str.
           301020]
          Length = 625

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 59/167 (35%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   ++  A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVSRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|281203514|gb|EFA77714.1| DEAD/DEAH box helicase domain-containing protein [Polysphondylium
           pallidum PN500]
          Length = 400

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 65/181 (35%), Gaps = 16/181 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
              + SAT     L      + E +        +   G+    V +  A     DV  ++
Sbjct: 203 QVGLFSATMTEETLSITHKFMKEPVKILVKKDELTLEGIRQFYVNVGPAEQGKFDVLTDL 262

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                    + +   T+R  + LT  + E+   V   H +    +R  I++  R G   V
Sbjct: 263 YETLSITQSV-IFCNTRRKVDWLTTKMTEQQFTVSSTHGD--QKDRDGILQSFRSGTTRV 319

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           L+  +LL  G+D+ +  LV   D        +  + I  IGR+ R     V +   T  +
Sbjct: 320 LITTDLLARGIDVQQVSLVINFD-----LPLNLENYIHRIGRSGRFGRKGVAINFITQNE 374

Query: 696 S 696
            
Sbjct: 375 Q 375


>gi|213510948|ref|NP_001133799.1| probable ATP-dependent RNA helicase DDX41 [Salmo salar]
 gi|209155372|gb|ACI33918.1| Probable ATP-dependent RNA helicase DDX41 [Salmo salar]
          Length = 615

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 17/212 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      ++    F  +   R  T++ SAT         +  +V+ I    G  
Sbjct: 341 RMIDMGFE-----EDIRTIFSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPITINVGRA 394

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 395 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLMFAEKKADVDAIHEYLLLKGVEAV 453

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   + GK DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 454 AIHGGKDQEERTKAIEAFKEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEE-----IEN 508

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            +  IGR  R+  + +            + +D
Sbjct: 509 YVHRIGRTGRSGKTGIATTFINKGCDESVLMD 540


>gi|50419843|ref|XP_458454.1| DEHA2C17534p [Debaryomyces hansenii CBS767]
 gi|74659385|sp|Q6BTL5|DRS1_DEBHA RecName: Full=ATP-dependent RNA helicase DRS1
 gi|49654120|emb|CAG86536.1| DEHA2C17534p [Debaryomyces hansenii]
          Length = 771

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 95/264 (35%), Gaps = 25/264 (9%)

Query: 520 CLRPTTIVVSAT---PGSWELEQCQGIIVEQIIRP-----TGLVDPPVEIRSARTQVEDV 571
             +  T++ SAT        ++      V  +I P       LV   V IR        +
Sbjct: 435 RHKRQTLLYSATMNTKIQDLIQLSLQKPVRVMIDPPKSAAIKLVQEFVRIRKRDHLKPAL 494

Query: 572 YDEINLAAQ--QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
             ++  +    Q  RI++ V  K  A  L   L    +RV  +H  +   +R+  + D +
Sbjct: 495 LFQLIKSVDPSQQNRIVVFVARKESAHKLRIILGLLGMRVSELHGSLTQEQRLASVNDFK 554

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVIL 688
                VL+  +L   GLDIP+  +V   D  K     +    +  +GR AR     K I 
Sbjct: 555 NLTVPVLICTDLAARGLDIPKIEIVINYDMPK-----THEIYLHRVGRTARAGREGKSIT 609

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           +    T+   +  D      E+Q   N K         + +   +D   +E+      S 
Sbjct: 610 FVGESTQDRAIVKDAIKSISEEQ-ARNSKQG-------KAVSRNVDWKEVEELNKIVESK 661

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMH 772
                 +  ++ +A  + L  +M 
Sbjct: 662 ATVIEEVLDEEKQAK-EMLHAEME 684


>gi|84569979|gb|AAI10806.1| DDX19B protein [Homo sapiens]
          Length = 449

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 239 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 292

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 293 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 352

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 353 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 411

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 412 MVDSKHSMNIL----NR---IQEHFNKK 432


>gi|89093208|ref|ZP_01166158.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89082504|gb|EAR61726.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 497

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 68/190 (35%), Gaps = 16/190 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI-------IRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT     L   +   ++ +       I+ T  V   V + S   +   + + ++
Sbjct: 240 QTLLYSATFTDDILNLAEQWTLDAVKIEIAPEIKTTDNVTQTVYLVSGEEKYRLLRNYMD 299

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  ++++    +     L + L +  IR   M  E+   +R+  + D R GK  VL
Sbjct: 300 --KDHAEKVIVFGNRRDETRRLADRLCKDGIRAALMSGEIPQQKRVRTLEDFRSGKIQVL 357

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   G+ I     V                 +  IGR  R   +   I +A     
Sbjct: 358 VATDVAGRGIHIDGVTHVFNY-----QLPEDPDDYVHRIGRTGRAGATGASICFACEDDS 412

Query: 696 SIQLAID-ET 704
            +   I+ ET
Sbjct: 413 FLIPEIEAET 422


>gi|328752857|gb|EGF66473.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
          Length = 564

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 570 DVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D  + I    Q     ++++   TKR  + L++ L +R  + R +H ++  + R + ++ 
Sbjct: 289 DKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKK 348

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            R G+  +LV  ++   G+D+     V   +         + + +  IGR  R     
Sbjct: 349 FRHGEATILVATDVAARGIDVTGVSHVINHEC-----PEDEKTYVHRIGRTGRAGAKG 401


>gi|297699176|ref|XP_002826669.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
           DDX19B-like [Pongo abelii]
          Length = 453

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 243 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 296

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 297 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 356

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 357 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 415

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 416 MVDSKHSMNIL----NR---IQEHFNKK 436


>gi|256811339|ref|YP_003128708.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
           AG86]
 gi|256794539|gb|ACV25208.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
           AG86]
          Length = 362

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 80/233 (34%), Gaps = 45/233 (19%)

Query: 496 TLAEYGFR------LPSCMDNRPLRFEEWNCLRPTTIVVSATP--GSWELEQCQGIIVEQ 547
            +   GF       L +C  N+  R   ++   P  I+  A    G +E  + +      
Sbjct: 153 EMLNMGFIEDVEKILNACNKNK--RILLFSATMPKEILNLAKKYMGDYEFVKAKINA--- 207

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
                 +    +EI       E       +   +    L+   TK+  +DL   L +   
Sbjct: 208 -----NIEQSYIEINEN----ERFETLCRILKDREFYGLVFCKTKKDTKDLANMLRDIGF 258

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +   +H ++   +R ++IR  +  K  +L+  +++  G+D+ +   V           ++
Sbjct: 259 KAGAIHGDLNQSQREKVIRLFKQKKIKILIATDVMSRGIDVNDLNCVINYH-----LPQN 313

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNI 720
             S +  IGR  R                  +AI    RR     E+ K  +I
Sbjct: 314 PESYMHRIGRTGRAGKKG-------------MAISIINRR-----EYRKLKHI 348


>gi|229520951|ref|ZP_04410373.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80]
 gi|229342184|gb|EEO07180.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80]
          Length = 423

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 88/257 (34%), Gaps = 35/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L EY        +D        I  +   +  R     + GF  P+   +R     
Sbjct: 132 TPGRLLEY--------IDAERFDCRAIEWLILDEADRM---LDMGFG-PTV--DRLSTEC 177

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEI 575
            W   R  T++ SAT    E    +G   + +  P     + P   R   +Q     D++
Sbjct: 178 RW---RKQTLLFSAT---LEGRGVEGFTADLLKDPAHVDAESPRRERKKISQWYHRADDM 231

Query: 576 NLAAQ--------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
               +        Q  R ++ + T+    DL   L +  I   ++  E+    R   I  
Sbjct: 232 PHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISR 291

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV- 686
            R G  ++L+  ++   G+D+P+   V   D       RS    +  IGR  R     + 
Sbjct: 292 FREGDVNILLATDVAARGIDVPDISHVINFD-----LPRSADVYLHRIGRTGRAGKKGIA 346

Query: 687 ILYADTITKSIQLAIDE 703
           I   +   + +   ++ 
Sbjct: 347 ISLVEAHDQPMMARVER 363


>gi|308807146|ref|XP_003080884.1| DEAD box protein P68 (ISS) [Ostreococcus tauri]
 gi|116059345|emb|CAL55052.1| DEAD box protein P68 (ISS) [Ostreococcus tauri]
          Length = 571

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 74/202 (36%), Gaps = 24/202 (11%)

Query: 523 PTTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             T++ SAT P   E      L +   + V Q   PT  V   +E      +V+ +   +
Sbjct: 291 HQTLLFSATMPVEVEALAADYLNKPVKVKVGQTSAPTANVSQQLEKVVDAEKVDRLVTML 350

Query: 576 NLAAQQGLR-------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
               ++  +        ++ V  K  A+++ E L   N+    +H      ER   + D 
Sbjct: 351 ISEQREAQKLGHSMPMTVVFVERKHRADEIAELLNAENVSAAALHGGRSQGEREAALHDY 410

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV--NSKV 686
           + G+  VLV  ++   GLD+     V  LD       R+    +  IGR  R        
Sbjct: 411 KTGRCSVLVATDVAARGLDVKGVAHVVNLD-----LPRNFEDYVHRIGRTGRAGMSGRST 465

Query: 687 ILYADT---ITKSIQLAIDETT 705
             Y D    I   I+ A+ E  
Sbjct: 466 SFYTDRDSFIVAQIKRALMELE 487


>gi|73954677|ref|XP_860395.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX6
           (DEAD-box protein 6) (ATP-dependent RNA helicase p54)
           (Oncogene RCK) isoform 3 [Canis familiaris]
          Length = 438

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G
Sbjct: 293 IIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRG 352

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
           +DI    +V   D  K        + +  IGR+ R  +  + +   T        +I+E
Sbjct: 353 IDIQAVNVVINFDFPKL-----AETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEE 406


>gi|157817897|ref|NP_001100529.1| ATP-dependent RNA helicase DDX42 [Rattus norvegicus]
 gi|149054552|gb|EDM06369.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (predicted) [Rattus
           norvegicus]
          Length = 929

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEI-RSARTQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  S  ++   +   +
Sbjct: 433 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 492

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     V
Sbjct: 493 VEFTSSG-SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDIPV 551

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 606

Query: 696 S 696
           S
Sbjct: 607 S 607


>gi|331006491|ref|ZP_08329791.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989]
 gi|330419691|gb|EGG94057.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989]
          Length = 573

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 75/202 (37%), Gaps = 29/202 (14%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK    +L E L  R      ++ ++   +R  I+  L+ G  D+L+  +++  
Sbjct: 251 VIVFVRTKVATLELAEKLSARGHSCAALNGDIPQNQRENIVEKLKRGTLDILIATDVVAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           S +  IGR  R   S   IL+  +  + +  AI+ 
Sbjct: 311 GLDVKRISHVINYD-----IPLDTESYVHRIGRTGRAGRSGEAILFVTSRERHLLRAIER 365

Query: 704 -----------------TTRRREKQLEH------NKKHNINPQSVKEKIMEVIDPILLED 740
                              +R E   +        K   I    + + I E   P+    
Sbjct: 366 DTNSVVEPMDVPSASDVNQKRAEVFKKRINDAITQKDLGIYHDIINQTIQENDHPMESIA 425

Query: 741 AATTNISIDAQQLSLSKKKGKA 762
           AA   ++  +Q L +S+K  + 
Sbjct: 426 AALAYLAQGSQPLFISEKDFQK 447


>gi|329956784|ref|ZP_08297353.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
 gi|328523823|gb|EGF50910.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
          Length = 372

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 81/245 (33%), Gaps = 27/245 (11%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L + + +   + +D     +                + + GF      D + L  +
Sbjct: 129 TPGRLLDLMNQ-GYIRLDSVRHFV----------LDEADRMLDMGFI----HDIKRLLPK 173

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVEDV 571
                   T+  SAT     +     ++ + +   I P       +E  +     + +  
Sbjct: 174 L--PKEKQTLFFSATMPDTIIALTNSLLKQPVKIAITPKSSTVDTIEQTVYFVEKKEKSK 231

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                L   +G  +L+   TK  A+ +   L +  I  + +H       R   + + + G
Sbjct: 232 LLISILHKAEGQSVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENFKTG 291

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           K  V++  ++   G+DI E  LV   D           + +  IGR  R  NS   L   
Sbjct: 292 KIRVMIATDIAARGIDINELPLVINYD-----LPDVPETYVHRIGRTGRAGNSGTALTFC 346

Query: 692 TITKS 696
           +  + 
Sbjct: 347 SQEER 351


>gi|327329925|gb|EGE71679.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL097PA1]
          Length = 564

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 570 DVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D  + I    Q     ++++   TKR  + L++ L +R  + R +H ++  + R + ++ 
Sbjct: 289 DKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKK 348

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            R G+  +LV  ++   G+D+     V   +         + + +  IGR  R     
Sbjct: 349 FRHGEATILVATDVAARGIDVTGVSHVINHEC-----PEDEKTYVHRIGRTGRAGAKG 401


>gi|323346496|gb|EGA80783.1| Dbp5p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 458

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L      V  +H +++T ER  +I D R G+  VL+  N+L  G
Sbjct: 316 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 375

Query: 646 LDIPECGLVAILDADKEGFLRSKTS-LIQTIGRAARNVNSKVI--LYADTITKSIQLAI 701
           +DIP   +V   D       ++  +  I  IGR  R     V      D  + +I  AI
Sbjct: 376 IDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAI 434


>gi|313812629|gb|EFS50343.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
          Length = 560

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 570 DVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D  + I    Q     ++++   TKR  + L++ L +R  + R +H ++  + R + ++ 
Sbjct: 285 DKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKK 344

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            R G+  +LV  ++   G+D+     V   +         + + +  IGR  R     
Sbjct: 345 FRHGEATILVATDVAARGIDVTGVSHVINHEC-----PEDEKTYVHRIGRTGRAGAKG 397


>gi|313764129|gb|EFS35493.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
 gi|314929970|gb|EFS93801.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
 gi|314972830|gb|EFT16927.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
 gi|328753876|gb|EGF67492.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
          Length = 560

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 570 DVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D  + I    Q     ++++   TKR  + L++ L +R  + R +H ++  + R + ++ 
Sbjct: 285 DKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKK 344

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            R G+  +LV  ++   G+D+     V   +         + + +  IGR  R     
Sbjct: 345 FRHGEATILVATDVAARGIDVTGVSHVINHEC-----PEDEKTYVHRIGRTGRAGAKG 397


>gi|262401641|ref|ZP_06078207.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
 gi|262352058|gb|EEZ01188.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
          Length = 416

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 89/257 (34%), Gaps = 35/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L EY        +D        I  +   +  R     + GF  P+   +R     
Sbjct: 132 TPGRLLEY--------IDAERFDCRAIEWLILDEADRM---LDMGFG-PTV--DRLSTEC 177

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEI 575
            W   R  T++ SAT    E    +G   + +  P     +PP   R   +Q     D++
Sbjct: 178 RW---RKQTLLFSAT---LEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDM 231

Query: 576 NLAAQ--------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
               +        Q  R ++ + T+    DL   L +  I   ++  E+    R   I  
Sbjct: 232 PHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISR 291

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV- 686
            R G  ++L+  ++   G+D+P+   V   D       RS    +  IGR  R     + 
Sbjct: 292 FREGDVNILLATDVAARGIDVPDISHVINFD-----LPRSADVYLHRIGRTGRAGKKGIA 346

Query: 687 ILYADTITKSIQLAIDE 703
           I   +   + +   ++ 
Sbjct: 347 ISLVEAHDQPMMARVER 363


>gi|254482185|ref|ZP_05095426.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037510|gb|EEB78176.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 618

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 67/159 (42%), Gaps = 10/159 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V T+    ++ E L  R      ++ ++   +R   I +L+ G  D+LV  ++   
Sbjct: 250 VIVFVRTRIATAEIAEKLAARGYSAAALNGDIPQKQREATIDNLKRGTIDILVATDVAAR 309

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+     V   D           + +  IGR  R       IL+A    + +  AI++
Sbjct: 310 GLDVERISHVINYD-----IPYDVEAYVHRIGRTGRAGREGDAILFAANRERRLLRAIEK 364

Query: 704 TTRRREKQLEHNKKHNINPQSVKE---KIMEVIDPILLE 739
            T   EK +E      +  + + +   +I E +D + L+
Sbjct: 365 ATGTIEK-MELPSVEQVTDKRIGKFKQRITETLDTVELD 402


>gi|114663439|ref|XP_001169952.1| PREDICTED: hypothetical protein isoform 14 [Pan troglodytes]
          Length = 484

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 274 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 327

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 328 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 387

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 388 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 446

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 447 MVDSKHSMNIL----NR---IQEHFNKK 467


>gi|332687106|ref|YP_004456880.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
 gi|332371115|dbj|BAK22071.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
          Length = 502

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 7/149 (4%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +RS   +  D+   +    Q     ++   TKR  ++L   L  R  +   +H ++   +
Sbjct: 219 VRSKDYEKFDIMTRLLD-VQTPELTIVFGRTKRRVDELARGLETRGYKAEGIHGDLSQQK 277

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+ ++R  + G  D+LV  ++   GLDI     V   D       +   S +  IGR  R
Sbjct: 278 RMSVLRAFKNGDLDILVATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGR 332

Query: 681 NVNSK-VILYADTITKSIQLAIDETTRRR 708
                  + +           I++ T++R
Sbjct: 333 AGKGGMSVTFVTPNEMGYLHVIEDLTKKR 361


>gi|326932134|ref|XP_003212175.1| PREDICTED: hypothetical protein LOC100549747 [Meleagris gallopavo]
          Length = 1561

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 92/261 (35%), Gaps = 25/261 (9%)

Query: 520  CLRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRS-ARTQVE 569
                 T++ SAT  + E++    + ++   R            L    + IR       E
Sbjct: 1158 SKHRQTMLFSAT-MTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDRE 1216

Query: 570  DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
             +   +         ++L   TK+ A  +   L    +RV  +H  +   +R+E +R  +
Sbjct: 1217 AIVSALLTRTFPDH-VMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFK 1275

Query: 630  LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
              + D+LV  ++   GLDI     V            +    +  +GR AR   +   + 
Sbjct: 1276 DEQIDILVATDVAARGLDIEGVKTVINF-----TMPNTTKHYVHRVGRTARAGRAGRSVS 1330

Query: 689  YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                  + +   I        K  +   K  I PQ V  K  E I+ +  +  A   +  
Sbjct: 1331 LVGEEERKMLKEIV-------KSAKTPVKARILPQDVILKFREKIENLEKDVYAVLCLER 1383

Query: 749  DAQQLSLSKKKGKAHLKSLRK 769
            + +++  S+ +     K L +
Sbjct: 1384 EEREMQQSEAQINKAKKQLEE 1404


>gi|313801696|gb|EFS42936.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
 gi|313809686|gb|EFS47420.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
 gi|313827484|gb|EFS65198.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
 gi|313830023|gb|EFS67737.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
 gi|313838410|gb|EFS76124.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
 gi|314918026|gb|EFS81857.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
 gi|314920401|gb|EFS84232.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
 gi|314956494|gb|EFT00782.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
 gi|314957338|gb|EFT01441.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
 gi|314967660|gb|EFT11759.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
 gi|314975747|gb|EFT19842.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
 gi|315095792|gb|EFT67768.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
 gi|315098853|gb|EFT70829.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
 gi|327442653|gb|EGE89307.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
 gi|327452701|gb|EGE99355.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
 gi|327453458|gb|EGF00113.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
 gi|328761493|gb|EGF75017.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL099PA1]
          Length = 564

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 570 DVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D  + I    Q     ++++   TKR  + L++ L +R  + R +H ++  + R + ++ 
Sbjct: 289 DKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKK 348

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            R G+  +LV  ++   G+D+     V   +         + + +  IGR  R     
Sbjct: 349 FRHGEATILVATDVAARGIDVTGVSHVINHEC-----PEDEKTYVHRIGRTGRAGAKG 401


>gi|307109393|gb|EFN57631.1| hypothetical protein CHLNCDRAFT_20835 [Chlorella variabilis]
          Length = 608

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TK  A +L+  L E     R +H ++   +R   +   R GKF VLV  ++  
Sbjct: 258 RTIIFTETKNDANELSGTLAES-FGARALHGDIPQGQREVTLAGFRSGKFSVLVATDVAA 316

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            GLDI    LV  L+  K+       + I   GR  R   + + L      K 
Sbjct: 317 RGLDISGVELVIQLEPPKD-----PETYIHRSGRTGRAGQTGICLTLVDRRKE 364


>gi|297814273|ref|XP_002875020.1| hypothetical protein ARALYDRAFT_490504 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320857|gb|EFH51279.1| hypothetical protein ARALYDRAFT_490504 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 507

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 12/137 (8%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  D R G    LV  +L   G
Sbjct: 374 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG 433

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +DI    +V   D     F ++  + +  +GR+ R  +  + +   T      L      
Sbjct: 434 IDIQAVNVVINFD-----FPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNL------ 482

Query: 706 RRREKQLEHNKKHNINP 722
             R +Q    +   I P
Sbjct: 483 -YRIEQELGTEIKQIPP 498


>gi|297800452|ref|XP_002868110.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313946|gb|EFH44369.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 102/280 (36%), Gaps = 40/280 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDV 571
            R  T++ SAT  + E+++   + + + +R         P GL +  V IR  R   ++ 
Sbjct: 346 KRRQTMLFSAT-MTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEA 404

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       ++++   TK+ A  L        ++   +H  +   +R++ +   R  
Sbjct: 405 VLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQ 464

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYA 690
           + D L+  ++   GLDI     V      +E       S +  +GR AR       + + 
Sbjct: 465 EVDFLIATDVAARGLDIIGVQTVINYACPRE-----IDSYVHRVGRTARAGREGYAVTFV 519

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
               +S+   I        K++    K  + P+    K   +ID   +ED  +  IS + 
Sbjct: 520 TDSDRSLLKVI-------AKKVGSKLKSRVIPEQSIVKWSHIIDE--MEDQYSAVISAER 570

Query: 751 QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            + +L K + +         M               RDEI
Sbjct: 571 DERALRKAEMEFAKAE---NMLEH------------RDEI 595


>gi|222423092|dbj|BAH19526.1| AT4G00660 [Arabidopsis thaliana]
          Length = 374

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 12/137 (8%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  D R G    LV  +L   G
Sbjct: 241 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG 300

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +DI    +V   D     F ++  + +  +GR+ R  +  + +   T      L      
Sbjct: 301 IDIQAVNVVINFD-----FPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNL------ 349

Query: 706 RRREKQLEHNKKHNINP 722
             R +Q    +   I P
Sbjct: 350 -YRIEQELGTEIKQIPP 365


>gi|289425167|ref|ZP_06426944.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           SK187]
 gi|295130858|ref|YP_003581521.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
 gi|289154145|gb|EFD02833.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           SK187]
 gi|291375854|gb|ADD99708.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
 gi|313792354|gb|EFS40453.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
 gi|313816221|gb|EFS53935.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
 gi|313832974|gb|EFS70688.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
 gi|314914858|gb|EFS78689.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
 gi|314962474|gb|EFT06574.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
 gi|314983655|gb|EFT27747.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
 gi|315077690|gb|EFT49741.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
 gi|315080851|gb|EFT52827.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
 gi|315109398|gb|EFT81374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
 gi|327329827|gb|EGE71582.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA2]
 gi|327452200|gb|EGE98854.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
          Length = 560

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 570 DVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D  + I    Q     ++++   TKR  + L++ L +R  + R +H ++  + R + ++ 
Sbjct: 285 DKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKK 344

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            R G+  +LV  ++   G+D+     V   +         + + +  IGR  R     
Sbjct: 345 FRHGEATILVATDVAARGIDVTGVSHVINHEC-----PEDEKTYVHRIGRTGRAGAKG 397


>gi|77628154|ref|NP_001005381.2| zinc responsive protein ZD10B [Rattus norvegicus]
 gi|51260031|gb|AAH79094.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a [Rattus norvegicus]
          Length = 478

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 268 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNREEKFQ 321

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 322 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 381

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 382 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 440

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 441 MVDSKHSMNIL----NR---IQEHFNKK 461


>gi|22328183|ref|NP_191975.2| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|30678703|ref|NP_849535.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75330763|sp|Q8RXK6|RH8_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 8
 gi|19423939|gb|AAL87312.1| putative RNA helicase [Arabidopsis thaliana]
 gi|21280839|gb|AAM45033.1| putative RNA helicase [Arabidopsis thaliana]
 gi|332656515|gb|AEE81915.1| DEAD-box ATP-dependent RNA helicase 8 [Arabidopsis thaliana]
 gi|332656516|gb|AEE81916.1| DEAD-box ATP-dependent RNA helicase 8 [Arabidopsis thaliana]
          Length = 505

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 12/137 (8%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  D R G    LV  +L   G
Sbjct: 372 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG 431

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +DI    +V   D     F ++  + +  +GR+ R  +  + +   T      L      
Sbjct: 432 IDIQAVNVVINFD-----FPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNL------ 480

Query: 706 RRREKQLEHNKKHNINP 722
             R +Q    +   I P
Sbjct: 481 -YRIEQELGTEIKQIPP 496


>gi|3047117|gb|AAC13628.1| similar to ATP-dependent RNA helicases [Arabidopsis thaliana]
 gi|7267405|emb|CAB80875.1| putative RNA helicase [Arabidopsis thaliana]
          Length = 499

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 12/137 (8%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  D R G    LV  +L   G
Sbjct: 366 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG 425

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +DI    +V   D     F ++  + +  +GR+ R  +  + +   T      L      
Sbjct: 426 IDIQAVNVVINFD-----FPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNL------ 474

Query: 706 RRREKQLEHNKKHNINP 722
             R +Q    +   I P
Sbjct: 475 -YRIEQELGTEIKQIPP 490


>gi|325262198|ref|ZP_08128936.1| ATP-dependent RNA helicase DbpA [Clostridium sp. D5]
 gi|324033652|gb|EGB94929.1| ATP-dependent RNA helicase DbpA [Clostridium sp. D5]
          Length = 481

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 62/183 (33%), Gaps = 15/183 (8%)

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-------IRSARTQVEDVYDEINLAAQQ 581
           SAT      E     I +  I      +  V              + +   + +    + 
Sbjct: 183 SATLKPEIQELVDEFIPDMTIVMQSATNEQVAAITEKLYFTDQENKYDTFLEILIN--EN 240

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
               ++   T+ M   L + L  R I    +H E++  ER++ +   R G F  L+  ++
Sbjct: 241 PQSCMIFCGTREMTNVLFQKLRRRRIFCGMLHGEMEQRERLKTVDAFRRGCFRFLIATDV 300

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLA 700
              G+D  +   V   D     F   K + +  IGR  RN      I       K +   
Sbjct: 301 AARGIDFEQITHVVNYD-----FPSKKETYVHRIGRTGRNGKCGTAISLVTEEDKRMLRQ 355

Query: 701 IDE 703
           ++E
Sbjct: 356 VEE 358


>gi|300781459|ref|ZP_07091313.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
           33030]
 gi|300533166|gb|EFK54227.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
           33030]
          Length = 675

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++ V TK+  E++ E L  R      ++ ++   +R   +  LR G+ D+LV  ++   
Sbjct: 312 MIVFVRTKQETEEIAEKLRARGFSAAAINGDIAQQQRERTVDMLRDGRLDILVATDVAAR 371

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAID 702
           GLD+     V   D           S +  IGR  R   +   +L+     + +  +I+
Sbjct: 372 GLDVERISHVLNYD-----IPNDTESYVHRIGRTGRAGRTGEALLFVTPRERRMLRSIE 425


>gi|301119991|ref|XP_002907723.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262106235|gb|EEY64287.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 479

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 63/197 (31%), Gaps = 40/197 (20%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G  +L+   T    + +T  L     +   +H ++    R+  +   +    +VLV  ++
Sbjct: 267 GQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDV 326

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLA 700
              GLDIP   +V   D    G        I  +GR AR   + V I +       +   
Sbjct: 327 ASRGLDIPSVDVVINYDIPTHG-----KDYIHRVGRTARAGRAGVAISFVTQYDVELYQR 381

Query: 701 IDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG 760
           I+                              +    L+  +    ++      +++ + 
Sbjct: 382 IEH-----------------------------LLGTKLDAYSCEEETVLVITERVNEAQR 412

Query: 761 KAHLKSLRKQMHLAADN 777
            A +     +M  AA N
Sbjct: 413 IATI-----EMKEAAAN 424


>gi|229593097|ref|YP_002875216.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
 gi|229364963|emb|CAY53082.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 628

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   +LV  ++   GLDI +   V   +    
Sbjct: 270 DKHGLTAVAIHGNKSQNARTKALADFKAGSVRILVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|319408783|emb|CBI82440.1| ATP-dependent RNA helicase [Bartonella schoenbuchensis R1]
          Length = 454

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/314 (17%), Positives = 102/314 (32%), Gaps = 44/314 (14%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
             R   L E    L         R  +    +  T + SAT           +  E +  
Sbjct: 153 QSRFLVLDEADRMLDMGFIRDVQRIAKLLHEKRQTALFSAT-----------MPREIVTL 201

Query: 551 PTGLVDPP--VEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRM 594
              L++ P  +EI    T    +  ++        +              +++   TK  
Sbjct: 202 AKNLLNEPVKIEIVPQGTVATKITQKLYCVPTSEKKSVLNKFLTDPALASVIIFTRTKHG 261

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
           A+ +   L +    V  +H       R   ++  R G   +LV  ++   G+D+P    V
Sbjct: 262 ADAVARSLTKAGYSVAAIHGNKSHAARQRALKAFREGSVGILVATDIAARGIDVPGVSHV 321

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAIDETTR----RR 708
              D   E       + +  IGR  RN  S   + L+ + + +    A++   R    R 
Sbjct: 322 INYDLPDE-----AENYVHRIGRTGRNDTSGNAITLFDEKVEQVRLRAVERVIRMKLTRE 376

Query: 709 EK--QLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKS 766
           +   Q+    + ++ P++ K+   +              I     + S SK K     K+
Sbjct: 377 DIPPQIAALPEKSLIPENDKKHCFKKSQCQKQAFDHIDQIKQSHVKNSSSKNKRCKKAKT 436

Query: 767 LRKQMHLAADNLNF 780
             K+    A +  F
Sbjct: 437 TTKR----AKSFRF 446


>gi|301155361|emb|CBW14827.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1]
          Length = 442

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 87/260 (33%), Gaps = 34/260 (13%)

Query: 470 LLFVDESHVTIPQISGMYRG-----DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +L  DE+   +    G            RK TL      L S      L  +    L   
Sbjct: 153 MLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL------LFSATLEGELLVDFAERLLND 206

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + + A P   E ++                       S   +++ +   I    ++  R
Sbjct: 207 PVKIDAEPSRRERKKINQWYYHAD--------------SNEHKIKLLARFIE--TEKVSR 250

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V  +    +L+E L +R IR  Y+  ++   +R   I  L+ G   VLV  ++   
Sbjct: 251 GIVFVRRREDVRELSETLRKRGIRSTYLEGDMAQTQRNNAIDKLKSGVVTVLVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+DI +   V   D        S  + +  IGR AR       +            + + 
Sbjct: 311 GIDIDDVTHVMNFD-----LPYSADTYLHRIGRTARAGKKGTAVSFVEAHD--YKLLGKI 363

Query: 705 TRRREKQLEHNKKHNINPQS 724
            R  E+ L+      + P++
Sbjct: 364 KRYTEELLKARILEGLEPRT 383


>gi|269796056|ref|YP_003315511.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269098241|gb|ACZ22677.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
          Length = 593

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 90/255 (35%), Gaps = 36/255 (14%)

Query: 478 VTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRF----EEWNCLRP- 523
             + Q   +  G   R   L + GF          L    +   L F    E+     P 
Sbjct: 137 KALEQGVEVVVGTPGRMIDLLKQGFLDLTRAQCVVLDEADEMLDLGFLPDVEKLLARTPA 196

Query: 524 --TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--------DVY 572
              T++ SAT PG+      + +     IR     D    +++ +  V         +V 
Sbjct: 197 VRHTMLFSATMPGAVVAMARRYMKQPTHIRANDPDDGGQTVKNIKQVVYRAHALDKVEVL 256

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  +  +GL I +   TKR A  + + L +R      +H ++    R + +R  R GK
Sbjct: 257 ARILQSEGRGLSI-VFARTKRTAAKVADELADRGFASGAIHGDLGQGAREQALRAFRSGK 315

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            DVLV  ++   G+D+ E   V             + + +   GR  R  +    + + D
Sbjct: 316 IDVLVATDVAARGIDVDEVTHVVNY-----QCPEDEKTYLHRTGRTGRAGHKGTAVTFVD 370

Query: 692 TITKS----IQLAID 702
                    I  A+D
Sbjct: 371 WDDLPRWSLINKALD 385


>gi|264681499|ref|NP_001161137.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Rattus
           norvegicus]
 gi|261263564|gb|ACX55119.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Rattus
           norvegicus]
          Length = 652

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L  +L++       +H +    +R E +   R G+ 
Sbjct: 426 DLLNATGRDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRK 485

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 486 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 532


>gi|226532852|ref|NP_001150170.1| ATP-dependent RNA helicase dhh1 [Zea mays]
 gi|195637296|gb|ACG38116.1| ATP-dependent RNA helicase dhh1 [Zea mays]
          Length = 503

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT             P  + +     + ++ I +    V+   ++         
Sbjct: 304 QLLMFSATFPVTVKEFKEKYLPRPYVINLMDELTLKGITQYYAFVEERQKVH-------- 355

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   +    E L + + E      Y+H+++    R  +  D R 
Sbjct: 356 CLNTLFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 414

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F ++  + +  +GR+ R  +  + +  
Sbjct: 415 GACRNLVCTDLFTRGIDIQAVNVVINFD-----FPKTSETYLHRVGRSGRYGHLGLAVNL 469

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            T      L        R +Q    +   I PQ
Sbjct: 470 ITYEDRFNL-------YRIEQELGTEIKTIPPQ 495


>gi|226496647|ref|NP_001140760.1| hypothetical protein LOC100272835 [Zea mays]
 gi|194700960|gb|ACF84564.1| unknown [Zea mays]
 gi|195623902|gb|ACG33781.1| ATP-dependent RNA helicase dhh1 [Zea mays]
          Length = 499

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT             P  + +     + ++ I +    V+   ++         
Sbjct: 300 QLLMFSATFPVTVKEFKDKYLPRPYVINLMDELTLKGITQYYAFVEERQKVH-------- 351

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   +    E L + + E      Y+H+++    R  +  D R 
Sbjct: 352 CLNTLFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 410

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F ++  + +  +GR+ R  +  + +  
Sbjct: 411 GACRNLVCTDLFTRGIDIQAVNVVINFD-----FPKTSETYLHRVGRSGRYGHLGLAVNL 465

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            T      L        R +Q    +   I PQ
Sbjct: 466 ITYEDRFNL-------YRIEQELGTEIKTIPPQ 491


>gi|104783960|ref|YP_610458.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95112947|emb|CAK17675.1| ATP-dependent RNA helicase RhlE, DEAD box family [Pseudomonas
           entomophila L48]
          Length = 634

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +        R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D +     VLV  ++   GLDI +   V   +    
Sbjct: 270 EKHGLTAAAIHGNKSQNARTKALADFKANTVRVLVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                +   +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVEEDYVHRIGRTGRAGRSGEAISMVAPDEEKLLKSIERVTKQK 371


>gi|332846343|ref|XP_001169849.2| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 10 [Pan
           troglodytes]
          Length = 453

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 243 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 296

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 297 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 356

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 357 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 415

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 416 MVDSKHSMNIL----NR---IQEHFNKK 436


>gi|315101547|gb|EFT73523.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
          Length = 560

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 570 DVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D  + I    Q     ++++   TKR  + L++ L +R  + R +H ++  + R + ++ 
Sbjct: 285 DKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKK 344

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            R G+  +LV  ++   G+D+     V   +         + + +  IGR  R     
Sbjct: 345 FRHGEATILVATDVAARGIDVTGVSHVINHEC-----PEDEKTYVHRIGRTGRAGAKG 397


>gi|301771123|ref|XP_002920985.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
           DDX19A-like [Ailuropoda melanoleuca]
          Length = 477

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 268 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNRDEKFQ 321

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 322 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 381

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 382 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 440

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 441 MVDSKHSMNIL----NR---IQEHFNKK 461


>gi|300857956|ref|YP_003782939.1| hypothetical protein cpfrc_00538 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685410|gb|ADK28332.1| hypothetical protein cpfrc_00538 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205685|gb|ADL10027.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330237|gb|ADL20431.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275920|gb|ADO25819.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis I19]
          Length = 441

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 14/177 (7%)

Query: 520 CLRPTTIVVSAT-PGSWELEQCQGIIVEQI-IRPTGLVDP----PVEIRSARTQVEDVYD 573
             +  T++ SAT PG   L   +  +   I IR   +        +E    +    D   
Sbjct: 185 KHQHQTLLFSATMPGP-VLTLARTFMSRPIHIRAEEVNASHTHASIEQVVFQAHRMDKTA 243

Query: 574 EINLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
               A Q   R   ++   TKR A +L E L  R  RV  +H ++    R   +   R G
Sbjct: 244 ITARALQAKERGKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAARELSLGMFRNG 303

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + D+LV  ++   GLDI +   V            +  + +  IGR  R  ++   +
Sbjct: 304 RVDILVATDVAARGLDIDDVTHVINYQT-----PDAPMTYVHRIGRTGRAGHTGTAI 355


>gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
           DSM 20745]
          Length = 526

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 67/179 (37%), Gaps = 13/179 (7%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TKR  ++LT+ L         +H ++  ++R  ++   R G+ ++L+  ++   
Sbjct: 243 AIIFCRTKRGVDELTQQLQSLGYAAEALHGDLSQVQRDRVMARFRSGQAELLIATDVAAR 302

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           GLD+     V   D    G   S    I   GRA R      I       + +   I+  
Sbjct: 303 GLDVEGITHVINYD--IPGDPESYVHRIGRTGRAGRAG--AAITLVTPRERRLLREIE-- 356

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
              R   +   ++    P+ V  +  E++     E  A    + D +   +   +  A+
Sbjct: 357 ---RATGVRMTRRGVPTPEEVAARQRELL----GESLAEVIEANDLEAAMMVVDELAAY 408


>gi|160897857|ref|YP_001563439.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160363441|gb|ABX35054.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 438

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 5/119 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R L+ V T+  AE + E LY+  I     H ++    R E + D +  ++ V++  +L 
Sbjct: 264 ERALVFVATRHTAELVAEKLYKAGIFATAFHGDLSQGARKEALADFKAKRWQVMITTDLA 323

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
             G+DI +  LV   D       RS T  +  IGR  R       +   T       A+
Sbjct: 324 ARGIDITQLPLVVNYD-----LPRSATDYVHRIGRTGRAGEDGTAISFVTPADQAHWAL 377


>gi|109129171|ref|XP_001107893.1| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 7 [Macaca
           mulatta]
          Length = 479

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 269 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 322

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 323 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 382

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 383 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 441

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 442 MVDSKHSMNIL----NR---IQEHFNKK 462


>gi|30683736|ref|NP_193396.3| DEAD/DEAH box helicase, putative (RH28) [Arabidopsis thaliana]
 gi|75338927|sp|Q9ZRZ8|RH28_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 28
 gi|3776027|emb|CAA09214.1| RNA helicase [Arabidopsis thaliana]
 gi|110736657|dbj|BAF00292.1| RNA helicase like protein [Arabidopsis thaliana]
 gi|332658378|gb|AEE83778.1| DEAD-box ATP-dependent RNA helicase 28 [Arabidopsis thaliana]
          Length = 789

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 103/280 (36%), Gaps = 40/280 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDV 571
            R  T++ SAT  + E+++   + + + +R         P GL +  V IR  R   ++ 
Sbjct: 343 KRRQTMLFSAT-MTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEA 401

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       ++++   TK+ A  L        ++   +H  +   +R++ +   R  
Sbjct: 402 VLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQ 461

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYA 690
           + D L+  ++   GLDI     V      +E       S +  +GR AR       + + 
Sbjct: 462 EVDFLIATDVAARGLDIIGVQTVINYACPRE-----IDSYVHRVGRTARAGREGYAVTFV 516

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
               +S+   I        K++    K  + P+    K  ++ID   +ED  +  IS + 
Sbjct: 517 TDSDRSLLKVI-------AKKVGSKLKSRVIPEQSIVKWSQIIDE--MEDQYSAVISAER 567

Query: 751 QQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEI 790
            + +L K + +         M               RDEI
Sbjct: 568 DERALRKAEMEFAKAE---NMLEH------------RDEI 592


>gi|73957034|ref|XP_536790.2| PREDICTED: similar to DDX19-like protein isoform 1 [Canis
           familiaris]
          Length = 478

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 268 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNRDEKFQ 321

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 322 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 381

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 382 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 440

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 441 MVDSKHSMNIL----NR---IQEHFNKK 461


>gi|329767883|ref|ZP_08259397.1| hypothetical protein HMPREF0428_01094 [Gemella haemolysans M341]
 gi|328838671|gb|EGF88270.1| hypothetical protein HMPREF0428_01094 [Gemella haemolysans M341]
          Length = 486

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 80/199 (40%), Gaps = 15/199 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSART------QVEDVYDE 574
           R  T++ SAT     +E  +  + + ++I+     D   +I    T      ++E +   
Sbjct: 174 RHQTLLFSATMPKTIMELSKDFMKDYKLIKTISDEDLKPDITEYATIARENEKLETLIGF 233

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++   Q     ++   TKR  ++L+  L  +      +H ++   +R+EI+R  +     
Sbjct: 234 LD--VQNPNLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQ 291

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           +LV  ++   G+DI +   V   D       +   S    IGR  R   S V I + + +
Sbjct: 292 ILVATDVAARGIDISDVTHVYNFD-----IPQDVESYTHRIGRTGRAGKSGVAITFLNPV 346

Query: 694 TKSIQLAIDETTRRREKQL 712
                  I+ +   R K L
Sbjct: 347 EMPYLKDIENSRGERMKML 365


>gi|315304037|ref|ZP_07874464.1| ATP-dependent RNA helicase DbpA [Listeria ivanovii FSL F6-596]
 gi|313627596|gb|EFR96302.1| ATP-dependent RNA helicase DbpA [Listeria ivanovii FSL F6-596]
          Length = 474

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 83/253 (32%), Gaps = 27/253 (10%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           ++   +   +  SAT    E+           +      +    I     Q E+    + 
Sbjct: 171 QFLPKKRQNLFFSAT-MPEEMHDLIKRYQNDPVVIEMAAEKTNPITHIEMQTENKEKTLQ 229

Query: 577 LA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                +     ++   TK   ++L++ L    +    +H  ++  ER   + D + GK  
Sbjct: 230 DVLITENPDSAIIFCNTKNQVDELSDLLQ---VNAAKIHGGLRQEERFRAMDDFKSGKSR 286

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTI 693
            L+  ++   G+D+    LV   D   E     K + +  IGR  R  NS K I +  T 
Sbjct: 287 FLIATDVAGRGIDVENVTLVINYDLPIE-----KENYVHRIGRTGRAGNSGKAISFVKTN 341

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
              +   I+                NI  Q  K++   +I+    E+A            
Sbjct: 342 ENPLLRDIE-------------AMLNITIQ--KKRKPTIIEVKASEEAFRKKQQKRPTIK 386

Query: 754 SLSKKKGKAHLKS 766
               +K   ++  
Sbjct: 387 KARGEKLNKNIMK 399


>gi|290959211|ref|YP_003490393.1| ATP-dependent RNA helicase [Streptomyces scabiei 87.22]
 gi|260648737|emb|CBG71850.1| putative ATP-dependent RNA helicase [Streptomyces scabiei 87.22]
          Length = 765

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 79/236 (33%), Gaps = 21/236 (8%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +D        A +  R ++ V T+  A+ + E L +  ++   +H  +    R   + D 
Sbjct: 261 KDKAPVTAAIASRKGRTIIFVRTQLGADRIAEQLRDSGVKADALHGGMTQGARTRTLADF 320

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G  + LV  ++   G+ +    LV  +D             +   GR AR   S  ++
Sbjct: 321 KDGYVNALVATDVAARGIHVDGIDLVLNVDP-----AGDHKDYLHRSGRTARAGRSGTVV 375

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                 +  +  I             +        +   ++ ++     + +    ++  
Sbjct: 376 SLSLPHQ--RRQIFRLMEDAGVDASRHIIQGGT--AFDTEVADITGARSMTEVQAESVDN 431

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
            AQQ      +    L+ + +             AA +RDE  RL +    +  +D
Sbjct: 432 AAQQAEREVAQLTKELERVTR------------RAAELRDEATRLTARAARERGED 475


>gi|167389793|ref|XP_001739087.1| ATP-dependent RNA helicase FAL1 [Entamoeba dispar SAW760]
 gi|165897365|gb|EDR24551.1| ATP-dependent RNA helicase FAL1, putative [Entamoeba dispar SAW760]
          Length = 384

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 80/198 (40%), Gaps = 13/198 (6%)

Query: 521 LRPTTIVVSATPGSWELE---QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           ++   ++ SAT     +E   +     +E +I+   +    ++      + E+   +   
Sbjct: 184 IKRQIVLCSATLTGDVIEIGTKIMNKPIEILIKRNEITVEEIKQYFIEIEKEEQKFDTLC 243

Query: 578 AAQQGLRI---LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                + I   ++    K+  + LTE + + N  V  MHSE+   ER  I+   R G+  
Sbjct: 244 EIYDSMTITQSVIFCNMKKKVDWLTENMMKANFPVISMHSEMPQQERDYIMNIFRKGEKR 303

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VL+  ++   G+D+ +  LV   D        ++   I  IGR+ R   + + +    + 
Sbjct: 304 VLITTDVWARGIDVTQISLVINYD-----MPLNREVYIHRIGRSGRFGRTGIAINF--VL 356

Query: 695 KSIQLAIDETTRRREKQL 712
           K+    + +  R    Q+
Sbjct: 357 KNEMDNLRDLERYYSTQI 374


>gi|119112278|ref|XP_311683.3| AGAP003397-PA [Anopheles gambiae str. PEST]
 gi|116129870|gb|EAA07398.3| AGAP003397-PA [Anopheles gambiae str. PEST]
          Length = 425

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 80/209 (38%), Gaps = 32/209 (15%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQ 581
             +  SAT   +E E  +            +V  P+ IR AR Q  ++++         Q
Sbjct: 215 QMMFFSAT---YEKEVMEFAEY--------IVPNPIIIRLAREQESLDNIKQYYVKCKNQ 263

Query: 582 GLR---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
             +                ++   T++ A  L+  + +    V  +  E+   +R+ ++ 
Sbjct: 264 DEKYQAISNIYGVITVGQAIIFCHTRKTAGWLSGKMTQDGHSVAVLSGELTVEQRLAVLD 323

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT-SLIQTIGRAARNVNSK 685
             R G   VL+  N+L  G+D+ +  +V   D   +   R+   + +  IGR  R   + 
Sbjct: 324 RFRAGLEKVLITTNVLSRGIDVEQVTIVVNFDLPMDQSGRADCETYLHRIGRTGRFGKNG 383

Query: 686 VILYADTITKSIQ--LAIDETTRRREKQL 712
           + +       S++    I E   +++ QL
Sbjct: 384 IAINLVDSDHSMEICRTI-EAHFQKKIQL 411


>gi|25141235|ref|NP_036138.1| ATP-dependent RNA helicase DDX3Y [Mus musculus]
 gi|73620958|sp|Q62095|DDX3Y_MOUSE RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName:
           Full=D1Pas1-related sequence 1; AltName: Full=DEAD box
           protein 3, Y-chromosomal; AltName: Full=DEAD-box RNA
           helicase DEAD2; Short=mDEAD2
 gi|3790186|emb|CAA07483.1| DBY protein [Mus musculus]
 gi|18204785|gb|AAH21453.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Mus musculus]
 gi|148706201|gb|EDL38148.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_b
           [Mus musculus]
          Length = 658

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L  +L++       +H +    +R E +   R G+ 
Sbjct: 432 DLLNATGKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRK 491

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 492 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 538


>gi|303844|dbj|BAA02152.1| eukaryotic initiation factor 4A [Oryza sativa Japonica Group]
 gi|12381900|dbj|BAB21260.1| eukaryotic initiation factor 4A [Oryza sativa]
          Length = 413

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 79/200 (39%), Gaps = 19/200 (9%)

Query: 515 FEEWNCL--RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT------GLVDPPVEIRSA 564
           ++ +  L  +    V SAT  P + E+ +       +I+         G+    V +   
Sbjct: 205 YDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE 264

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             +++ + D     A    + ++ V T++  + LT+ +  R+  V   H ++    R  I
Sbjct: 265 EWKLDTLCDLYETLAIT--QSVIFVNTRK-VDWLTDKMRGRDHTVSATHGDMDQNTRDII 321

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R+ R G   VL+  +LL  G+D+ +  LV   D           + +  IGR+ R    
Sbjct: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRK 376

Query: 685 KV-ILYADTITKSIQLAIDE 703
            V I +     + +   I  
Sbjct: 377 GVAINFVTRDDERMLFDIQR 396


>gi|326527477|dbj|BAK08013.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 614

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 6/117 (5%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +G + ++   TKR A+ L+ Y   R ++ + +H ++   +R   ++  R G+F  L+  
Sbjct: 347 AKGGKCIVFTQTKRDADRLS-YTMGRTVQCQALHGDITQGQRERTLQGFREGRFSTLIAT 405

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           ++   GLDIP   LV            +    +   GR  R     + +      +S
Sbjct: 406 DVAARGLDIPNVDLVI-----HYELPNNSEIFVHRSGRTGRAGKKGIAIVMYGYNQS 457


>gi|297745244|emb|CBI40324.3| unnamed protein product [Vitis vinifera]
          Length = 472

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 12/137 (8%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  D R G    LV  +L   G
Sbjct: 339 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG 398

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +DI    +V   D     F ++  + +  +GR+ R  +  + +   T      L      
Sbjct: 399 IDIQAVNVVINFD-----FPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNL------ 447

Query: 706 RRREKQLEHNKKHNINP 722
             R +Q    +   I P
Sbjct: 448 -YRIEQELGTEIKQIPP 463


>gi|254706857|ref|ZP_05168685.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis
           M163/99/10]
 gi|254710035|ref|ZP_05171846.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis B2/94]
 gi|254714037|ref|ZP_05175848.1| ATP-dependent RNA helicase DDX17 [Brucella ceti M644/93/1]
 gi|254716905|ref|ZP_05178716.1| ATP-dependent RNA helicase DDX17 [Brucella ceti M13/05/1]
 gi|256031530|ref|ZP_05445144.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis M292/94/1]
 gi|261218712|ref|ZP_05932993.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261314321|ref|ZP_05953518.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261317582|ref|ZP_05956779.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261321790|ref|ZP_05960987.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|265988616|ref|ZP_06101173.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|260923801|gb|EEX90369.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261294480|gb|EEX97976.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|261296805|gb|EEY00302.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261303347|gb|EEY06844.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|264660813|gb|EEZ31074.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M292/94/1]
          Length = 482

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 16/191 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVED------VYD 573
            T+  SAT    E+ +     +   +R            V  R  ++  +D      + D
Sbjct: 180 QTLFFSAT-MPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRD 238

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I          ++    K+   +L   L         +H ++    R+ ++   + GK 
Sbjct: 239 LIQSEGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKL 298

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIP+   V   D             +  IGR  R   S       T 
Sbjct: 299 RLLVASDVAARGLDIPDVSHVFNFDVPI-----HAEDYVHRIGRTGRAGRSGKAFTIVTS 353

Query: 694 TKSIQLAIDET 704
           + +  LA  E+
Sbjct: 354 SDTKYLAAIES 364


>gi|240274195|gb|EER37713.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus H143]
 gi|325095426|gb|EGC48736.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus H88]
          Length = 487

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 19/190 (10%)

Query: 520 CLRPTTIVVSAT-PGS----------WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV 568
             +  T++ +AT P S            +    G  +   IR    +   VE+     + 
Sbjct: 246 SRKRQTVMFTATWPISVRKLATTFMKEPITVTIGGDLSSDIRANTRIKQIVEVVKPENKE 305

Query: 569 EDVYDEINLAAQQGL---RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
             +   +N   +      ++L+  L K+ A  +  ++  +  +V  +H ++   ER   +
Sbjct: 306 SRLLSLLNQYQRGRNAMDKVLVFCLYKKEATRIERFIRSKGFKVAGIHGDMNQTERFNSL 365

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              +LG   VLV  ++   GLDIP   LV  +      F  +    +  IGR  R  +  
Sbjct: 366 DAFKLGSVPVLVATDVAARGLDIPAVKLVLNV-----TFPLTVEDYVHRIGRTGRAGSDG 420

Query: 686 VILYADTITK 695
           + +   T   
Sbjct: 421 LAITMFTEND 430


>gi|256422981|ref|YP_003123634.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256037889|gb|ACU61433.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 444

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 73/198 (36%), Gaps = 15/198 (7%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
             E+        E+I++   +V           Q   +  ++    + G  I++    K+
Sbjct: 205 PEEINIAISKPPEKIVQEAFVVFEE--------QKTGLIKQLLARKEFG-CIIIFCSRKQ 255

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             + LT  L +    V  +HS+++  +R +++ D +  K  +LV  ++L  G+DI +  L
Sbjct: 256 NVKQLTYELKKARFSVEEIHSDLEQDKREQVLMDFKNKKLKMLVATDILSRGIDIEDIDL 315

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA-IDETTRRREKQL 712
           V   D             I  IGR AR           +  +  + A I+E   +   + 
Sbjct: 316 VINYDV-----PNDAEDYIHRIGRTARAATDGTAYTIISEKEQRKFARIEEVLGKPVTKA 370

Query: 713 EHNKKHNINPQSVKEKIM 730
           E        P+   +   
Sbjct: 371 EVPAALGPVPEYSPKPFR 388


>gi|223996771|ref|XP_002288059.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977175|gb|EED95502.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 384

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 63/176 (35%), Gaps = 18/176 (10%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA----------RTQVEDV 571
            T++ SAT      E  +   +   Q++R    V    E+R               +  V
Sbjct: 194 QTMLFSATMPKALVEFTKTGMMHDPQVVRLDNEVQVSEELRIGFVTCRSDEKDAVLLHLV 253

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
            D +   +++GL  L+   T+   E LT  L    +    ++  +    R + +   + G
Sbjct: 254 RDHVGKHSKRGL-TLIFAATRHHVEYLTLLLETSGLSATQIYGNMDNTARQQNLNAFQSG 312

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
           +  +LV  ++   G+DIP    V         F  S    +   GRAAR       
Sbjct: 313 QCPILVVTDVAARGIDIPLIDHVI-----HYAFPPSAKLFVHRSGRAARAGRIGYC 363


>gi|157734244|gb|ABV68940.1| ATP-dependent DEAD-box helicase [Apocynum venetum]
          Length = 447

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   T+R  + LT+ ++        MHS++   ER  I+ + + G    L+  ++   
Sbjct: 274 AVIFCNTRRKVDWLTDKMHSNQFTASVMHSDMPNKEREVIMNEFKGGATKALITTDVWAR 333

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE 703
           G+D+ + G+V   D       +++   I  IGR  +      VI +  +    +   I++
Sbjct: 334 GIDVQQVGIVINYD-----LPQNRELYIHRIGRTGKFGRKSAVINFVKSEDIRLLRDIEQ 388


>gi|147784525|emb|CAN61726.1| hypothetical protein VITISV_032421 [Vitis vinifera]
          Length = 554

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 5/111 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ILL V +K  A++L   L   +IRV  +H+++   +R   + D R GK  VL+  +++  
Sbjct: 366 ILLFVQSKERAKELYTELAFDDIRVDVIHADLSQSQRENAVDDFRAGKTWVLIATDVIAR 425

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           G+D      V   D     F  S  + I  IGR+ R   +   +   T   
Sbjct: 426 GMDFKGINCVINYD-----FPDSPAAYIHRIGRSGRAGRTGEAITIYTEDD 471


>gi|119469628|ref|ZP_01612497.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
 gi|119446875|gb|EAW28146.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
          Length = 425

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 81/229 (35%), Gaps = 14/229 (6%)

Query: 479 TIPQISGMYRGDFHRKATLAEYGFR--LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536
           T+ +I  +   +  R   L   GF   +    D  P   +  N L   T+       ++E
Sbjct: 152 TLNEIEVVVLDEADRMFDL---GFIKDIRYMFDRMPDTSKRLNLLFSATLSYRVQELAFE 208

Query: 537 -LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
            +   + + +E  ++    +   +   S   +++ +   I    +   + ++   TK   
Sbjct: 209 HMTNPEHVQIEPDVKTGKRIKEELFHPSQEDKIKLLLTLIEE--EWPDKAIVFANTKHSC 266

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E +  +L     RV  +  +V   +R  I+     G+ D LV  ++   GL IPE   V 
Sbjct: 267 ETVYAWLKADGHRVGMLTGDVNQKKRQSILAQFSKGELDFLVATDVAARGLHIPEVSHVF 326

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAIDE 703
             D             +  IGR  R   +   I +A          I+E
Sbjct: 327 NFD-----LPDDCEDYVHRIGRTGRAGASGHAISFACEQYAYNLHEIEE 370


>gi|330972612|gb|EGH72678.1| helicase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 498

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|238026875|ref|YP_002911106.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
 gi|237876069|gb|ACR28402.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
          Length = 524

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L++ + I + Q +     +   V     R   + + D + 
Sbjct: 239 QTMLFSATLDGKIGSLTSRLLKEPERIEIVQKLEARTNIAQTVHYVDDRDHKDRLLDHLL 298

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  + ++   TK  A+ L   L +       +H ++    R   IR LR  +  VL
Sbjct: 299 -RDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARNRTIRALRERRVRVL 357

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S + +    +  +
Sbjct: 358 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGIAVSL--VHHA 410

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 411 EQGALKRIER 420


>gi|195581486|ref|XP_002080565.1| GD10546 [Drosophila simulans]
 gi|194192574|gb|EDX06150.1| GD10546 [Drosophila simulans]
          Length = 782

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 97/262 (37%), Gaps = 31/262 (11%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIR-SARTQVE 569
           C    T++ SAT  S +++    + +++ I+            L    + IR       E
Sbjct: 333 CKTRQTMLFSAT-MSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDRE 391

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   +          ++ V TK+ A  L   L    +R   +H  +   +R+E ++  +
Sbjct: 392 PILASLICRTFHDH-CMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFK 450

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
             + DVL+  ++   GLDI     V            +    I  +GR AR   + +   
Sbjct: 451 EEQIDVLIATDVAARGLDIVGVKTVINF-----VMPITTEHYIHRVGRTARAGRAGI--- 502

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK----HNINPQSVKEKIMEVIDPILLEDAATTN 745
                 S+ LA  E  R+  K +  N +    + I P  + EK    +  +  E     +
Sbjct: 503 ------SVSLA-GEKERKIVKDIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILD 555

Query: 746 ISIDAQQLSLSKKKGKAHLKSL 767
                +QL+ ++++     + L
Sbjct: 556 EEQAERQLAKTEQQLSKTERKL 577


>gi|74181660|dbj|BAE32549.1| unnamed protein product [Mus musculus]
          Length = 658

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L  +L++       +H +    +R E +   R G+ 
Sbjct: 432 DLLNATGKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRK 491

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 492 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 538


>gi|325577158|ref|ZP_08147642.1| ATP-dependent RNA helicase SrmB [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160740|gb|EGC72861.1| ATP-dependent RNA helicase SrmB [Haemophilus parainfluenzae ATCC
           33392]
          Length = 443

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 87/260 (33%), Gaps = 34/260 (13%)

Query: 470 LLFVDESHVTIPQISGMYRG-----DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +L  DE+   +    G            RK TL      L S      L  +    L   
Sbjct: 153 MLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL------LFSATLEGELLVDFAERLLND 206

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + + A P   E ++                       S   +++ +   I    ++  R
Sbjct: 207 PVKIDAEPSRRERKKINQWYYHAD--------------SNEHKIKLLARFIE--TEKVSR 250

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V  +    +L++ L +R IR  Y+  ++   +R   I  L+ G   VLV  ++   
Sbjct: 251 GIVFVRRREDVRELSDTLRKRGIRSTYLEGDMAQTQRNNAIDKLKSGVVTVLVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+DI +   V   D        S  + +  IGR AR       +            + + 
Sbjct: 311 GIDIDDVTHVMNFD-----LPYSADTYLHRIGRTARAGKKGTAVSFVEAHD--YKLLGKI 363

Query: 705 TRRREKQLEHNKKHNINPQS 724
            R  E+ L+      + P++
Sbjct: 364 KRYTEELLKARILEGLEPRT 383


>gi|223674049|pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
           Rna
 gi|223674050|pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
           Rna
          Length = 412

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 202 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 255

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 256 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 315

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 316 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 374

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 375 MVDSKHSMNIL----NR---IQEHFNKK 395


>gi|332534395|ref|ZP_08410235.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036129|gb|EGI72604.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 425

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 80/229 (34%), Gaps = 14/229 (6%)

Query: 479 TIPQISGMYRGDFHRKATLAEYGFR--LPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWE 536
           T+ +I  +   +  R   L   GF   +    D  P   +  N L   T+       ++E
Sbjct: 152 TLNEIEVVVLDEADRMFDL---GFIKDIRYMFDRMPDTSKRLNLLFSATLSYRVQELAFE 208

Query: 537 -LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
            +   + + +E  ++    +   +   S   +++ +   I    +   + ++   TK   
Sbjct: 209 HMTNPEHVQIEPDVKTGKRIQEELFHPSQEDKIKLLLTLIEE--EWPEKAIVFANTKHSC 266

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVA 655
           E +  +L     RV  +  +V   +R  I+     G  D LV  ++   GL IPE   V 
Sbjct: 267 ETVYAWLKSDGHRVGMLTGDVNQKKRQTILAQFSKGDLDFLVATDVAARGLHIPEVSHVF 326

Query: 656 ILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAIDE 703
             D             +  IGR  R   +   I +A          I+E
Sbjct: 327 NFD-----LPDDCEDYVHRIGRTGRAGASGHAISFACEQYAYNLHEIEE 370


>gi|330923439|ref|XP_003300242.1| hypothetical protein PTT_11425 [Pyrenophora teres f. teres 0-1]
 gi|311325733|gb|EFQ91667.1| hypothetical protein PTT_11425 [Pyrenophora teres f. teres 0-1]
          Length = 606

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 13/168 (7%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R L+   +K   + + ++LY + + V  +HS+    ER + +R  R  +  +LV   + 
Sbjct: 385 QRTLVFTNSKAKCDMVDDFLYNKALPVTSIHSDRTQREREDALRSFRTARCPILVATGVT 444

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAI 701
             GLD+     V   D          T  I  IGR AR  N  K   + +   + I    
Sbjct: 445 ARGLDVANIKHVINYDLPST-MHDGITEYIHRIGRTARIGNEGKATSFFNDRNEDIGE-- 501

Query: 702 DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
           D T    +  LE N+     P+ +++ I E  DP  +     T+   D
Sbjct: 502 DLT----KILLESNQA---VPEFLQQHIPE--DPTKINWHDGTDDESD 540


>gi|289616575|emb|CBI56740.1| unnamed protein product [Sordaria macrospora]
          Length = 592

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 1/113 (0%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V +KR A++L ++L+ + +    MH E    ER   +R  R G+  VL+   +  
Sbjct: 400 RTIIFVNSKRAADELDDFLFNKGVPCVSMHGERTQREREAAMRAFRAGRSPVLITTAVTA 459

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            G+D+     V   D     +          IGR  R  +  +     T    
Sbjct: 460 RGIDVRNVLHVINFDLPSAMYG-GIEEYTHRIGRTGRIGHRGLATSFYTERDE 511


>gi|289428099|ref|ZP_06429802.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           J165]
 gi|289158699|gb|EFD06900.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           J165]
 gi|313822547|gb|EFS60261.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
 gi|314960461|gb|EFT04563.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
 gi|314989611|gb|EFT33702.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
 gi|315085333|gb|EFT57309.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
 gi|327327119|gb|EGE68898.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA3]
 gi|327443743|gb|EGE90397.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
 gi|328754844|gb|EGF68460.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
          Length = 560

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 570 DVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D  + I    Q     ++++   TKR  + L++ L +R  + R +H ++  + R + ++ 
Sbjct: 285 DKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKK 344

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            R G+  +LV  ++   G+D+     V   +         + + +  IGR  R     
Sbjct: 345 FRHGEATILVATDVAARGIDVTGVSHVINHEC-----PEDEKTYVHRIGRTGRAGAKG 397


>gi|240850851|ref|YP_002972251.1| ATP-dependent RNA helicase [Bartonella grahamii as4aup]
 gi|240267974|gb|ACS51562.1| ATP-dependent RNA helicase [Bartonella grahamii as4aup]
          Length = 460

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK  A+ +T  L +    V  +H       R   ++  R     +LV  ++   
Sbjct: 253 VIVFTRTKHGADSVTRSLAKIGYSVATIHGNKSQGARQSALKAFRERSVQILVATDIAAR 312

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTITKSIQLAID 702
           G+DIP    V   D   E       S +  IGR  RN  S   + L+ + I +    AI+
Sbjct: 313 GIDIPGISHVINYDLPDE-----AESYVHRIGRTGRNGASGEALTLFDEKIERERLRAIE 367

Query: 703 ETTR 706
              R
Sbjct: 368 RLIR 371


>gi|224368898|ref|YP_002603060.1| RhlE1 [Desulfobacterium autotrophicum HRM2]
 gi|223691615|gb|ACN14898.1| RhlE1 [Desulfobacterium autotrophicum HRM2]
          Length = 427

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 65/174 (37%), Gaps = 7/174 (4%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLA 578
            T++ SAT      +  +G++   VE  + P   V   ++  +       +       + 
Sbjct: 199 QTLMFSATFPDEIRDLARGLLHDPVEISVAPPNSVLKIIKQWVYPVDQNKKSALLSKLIC 258

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q  ++L+   TK  A+ L  +L +  I    +H +     R + + + + G   +LV 
Sbjct: 259 DNQWEQVLVFSKTKNGADRLVRHLEKEGIDAAAIHGDKSQGARTKALENFKKGTVRILVA 318

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            ++   GLDI +   V   D            L+   GRA        ++ AD 
Sbjct: 319 TDIAARGLDIYQLPQVVNFDLPHVK--EDYVHLMGRTGRAGAPGQVISLVCADE 370


>gi|224136846|ref|XP_002322430.1| predicted protein [Populus trichocarpa]
 gi|222869426|gb|EEF06557.1| predicted protein [Populus trichocarpa]
          Length = 657

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 85/234 (36%), Gaps = 40/234 (17%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV-------------EIRS-ARTQVE 569
            T++ SAT   W        I  + ++PT      V              +   + + + 
Sbjct: 266 QTLLFSATLPGW-----VKQISSKFLKPTKKTIDLVGNEKMKASTNVRHIVLPCSTSAIP 320

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            V  +I      G R ++    +  A +L+  L       R +H E++  +R   +   R
Sbjct: 321 QVIPDIIRCYASGGRTIIFTEKRESANELSGLLP----GARALHGEIQQSQREVTLSGFR 376

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GKF  LV  N+   GLDI +  L+   +           + I   GR  R  NS V + 
Sbjct: 377 SGKFLTLVATNVAARGLDINDVQLIIQCEP-----PNDVEAYIHRSGRTGRAGNSGVAVM 431

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743
                +S    I     +RE  ++   +H   P++      ++   + +E A T
Sbjct: 432 LYDPRRSNISKI-----QRESGVKF--EHITAPKA-----EDIAKAVGVEAAET 473


>gi|255931895|ref|XP_002557504.1| Pc12g06640 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582123|emb|CAP80291.1| Pc12g06640 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 645

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A+     L+  +    A  LT    +  +  RY+ +      R+E +R  +  +F VL+ 
Sbjct: 283 AENRKSTLVFCVDIEHARRLTAAFRDHGVDARYITASTPKGVRVEQLRAFKDQEFPVLLN 342

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             L  EG DIP    V +    +     S+  LIQ IGR  R    K   +   +  S++
Sbjct: 343 CGLFTEGTDIPNIDCVLLARPTR-----SRNLLIQMIGRGLRLFPGKKDCHVIDMVASLE 397

Query: 699 LAIDET 704
             +  T
Sbjct: 398 TGVLST 403



 Score = 44.3 bits (103), Expect = 0.092,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 11/123 (8%)

Query: 107 ARLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHS 166
           +RL      L+K+  +  P R    N+    +    +  +Y     Q  +I  +LK +  
Sbjct: 8   SRLRLPRRYLVKSPLLQKPLRHVRFNSTESPVPPSIVLRNY-----QEESIQSVLKYLGE 62

Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQ------RPAIVMAPNKILAAQLYSEFKNFFPHN 220
             +   +   TG+GKT    ++I  +          +++   + L  Q        +P  
Sbjct: 63  GHRRLGISLATGAGKTVIFTQLISRIPPRDTKATKTMIIVHRRELVEQAAKHCSLAYPDK 122

Query: 221 AVE 223
            VE
Sbjct: 123 TVE 125


>gi|327481375|gb|AEA84685.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri DSM 4166]
          Length = 443

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 85/224 (37%), Gaps = 25/224 (11%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            + + GF      D + L  E     R  T++ SAT G   L +    ++   +     +
Sbjct: 156 RMLDMGF----AEDMQRLVGEC--EKRQQTLLFSATSGGAGLREMVAKVLNDPL--HLQL 207

Query: 556 DPPVEIR-SARTQV---------EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           +   E+  S R Q+         E +   +  A +   + ++   T+  A+ L  +L   
Sbjct: 208 NRVSELNESTRQQIITADDPAHKEKLVHWLL-ANETYQKAVIFTNTRAQADRLYGHLVAG 266

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +I+V  +H E    ER   I  L+ G   VLV  ++   GLDI    LV   D  + G  
Sbjct: 267 DIKVFVLHGEKDQKERKLAIERLKQGGVKVLVATDVAARGLDIEGMDLVINFDMPRSG-- 324

Query: 666 RSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                 +  IGR  R       I        ++  +I+   ++R
Sbjct: 325 ---DEYVHRIGRTGRAGAEGLAISLICHNDWNLMSSIERYLKQR 365


>gi|325911916|ref|ZP_08174319.1| putative DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
           iners UPII 143-D]
 gi|325476218|gb|EGC79381.1| putative DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
           iners UPII 143-D]
          Length = 419

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 19/180 (10%)

Query: 529 SAT-PGSWE------LEQCQGIIVE--QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           SAT P   E      +E  + ++++   +I PT + +  +++ S     +D+   +    
Sbjct: 188 SATIPVKLEQFLNKYMEHPEFVVIDNPSVISPT-VANDLIDVGSKNK--KDILYTLL-TM 243

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            Q     +   TK+  ++L  YL ++ ++V  +H  +   ER   IR +R G++  ++  
Sbjct: 244 GQPYLAFVFANTKKTVDELATYLDQKGLKVAKIHGGITERERKRTIRQVREGQYQYVIAS 303

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +L   G+DIP   LV   +            +I  IGR  RN N           + +Q 
Sbjct: 304 DLAARGIDIPGISLVINYE-----IPTDLEFVIHRIGRTGRN-NLYGHAITLIHEEEMQQ 357


>gi|311257032|ref|XP_003126918.1| PREDICTED: ATP-dependent RNA helicase DDX19A-like isoform 2 [Sus
           scrofa]
          Length = 428

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 218 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNRDEKFQ 271

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 272 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREG 331

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 332 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 390

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 391 MVDSKHSMNIL----NR---IQEHFNKK 411


>gi|254247856|ref|ZP_04941177.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184]
 gi|124872632|gb|EAY64348.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184]
          Length = 545

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I ++Q +     +   V     R   + + D + 
Sbjct: 269 QTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIAQTVHYVDDRDHKDRLLDHLL 328

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  + ++   TK  A+ L   L +       +H ++    R   IR LR  +  VL
Sbjct: 329 -RDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARNRTIRALRERRVRVL 387

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S + +    +  +
Sbjct: 388 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGIAVSL--VHHA 440

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 441 EQGALKRIER 450


>gi|62241022|ref|NP_001014449.1| ATP-dependent RNA helicase DDX19B isoform 3 [Homo sapiens]
 gi|114663454|ref|XP_001169865.1| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 11 [Pan
           troglodytes]
 gi|114663456|ref|XP_001169903.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 12 [Pan
           troglodytes]
 gi|114663458|ref|XP_001169929.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 13 [Pan
           troglodytes]
 gi|114663460|ref|XP_001169754.1| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 5 [Pan
           troglodytes]
 gi|114663462|ref|XP_001169778.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 6 [Pan
           troglodytes]
 gi|114663464|ref|XP_001169817.1| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 8 [Pan
           troglodytes]
 gi|13811397|gb|AAK40102.1|AF353720_1 testicular DEAD-box helicase protein [Homo sapiens]
 gi|31417274|gb|AAH10008.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [Homo sapiens]
 gi|119572217|gb|EAW51832.1| hCG1998531, isoform CRA_c [Homo sapiens]
 gi|119572222|gb|EAW51837.1| hCG1998531, isoform CRA_c [Homo sapiens]
 gi|194377990|dbj|BAG63358.1| unnamed protein product [Homo sapiens]
 gi|221046080|dbj|BAH14717.1| unnamed protein product [Homo sapiens]
          Length = 370

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 160 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 213

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 214 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 273

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 274 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 332

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 333 MVDSKHSMNIL----NR---IQEHFNKK 353


>gi|21356161|ref|NP_651970.1| Rs1 [Drosophila melanogaster]
 gi|7304081|gb|AAF59119.1| Rs1 [Drosophila melanogaster]
 gi|28626484|gb|AAO49161.1| LD15481p [Drosophila melanogaster]
          Length = 782

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 97/262 (37%), Gaps = 31/262 (11%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIR-SARTQVE 569
           C    T++ SAT  S +++    + +++ I+            L    + IR       E
Sbjct: 333 CKTRQTMLFSAT-MSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDRE 391

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   +          ++ V TK+ A  L   L    +R   +H  +   +R+E ++  +
Sbjct: 392 PILASLICRTFHDH-CMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFK 450

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
             + DVL+  ++   GLDI     V            +    I  +GR AR   + +   
Sbjct: 451 EEQIDVLIATDVAARGLDIVGVKTVINF-----VMPITTEHYIHRVGRTARAGRAGI--- 502

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK----HNINPQSVKEKIMEVIDPILLEDAATTN 745
                 S+ LA  E  R+  K +  N +    + I P  + EK    +  +  E     +
Sbjct: 503 ------SVSLA-GEKERKIVKDIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILD 555

Query: 746 ISIDAQQLSLSKKKGKAHLKSL 767
                +QL+ ++++     + L
Sbjct: 556 EEQAERQLAKTEQQLSKTERKL 577


>gi|327404226|ref|YP_004345064.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327319734|gb|AEA44226.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 379

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 75/192 (39%), Gaps = 14/192 (7%)

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE-IRSARTQVED----- 570
            W   +   ++ SAT      E  Q I+ E I+      +  VE I+    +V D     
Sbjct: 174 SWIPKKRQNLLFSATLNDKVSEITQLILHEPIVLKIENEEDSVELIQQTAYRVSDERKGP 233

Query: 571 -VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   I     +  ++L+   +   A+ + E L + NI  + +HS+     R +++R+ +
Sbjct: 234 LLRYLIRSRNMK--QVLIFTSSTFKADQVVEKLRKNNIDAQAIHSKKSQDARNKVLRNFK 291

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  +L+  G+DI     V   +       RS    +  IGR  R  ++   L 
Sbjct: 292 AGHLKVLVATDLISRGIDIEFLPFVINYE-----LPRSPKDYVHRIGRTGRAESTGEALT 346

Query: 690 ADTITKSIQLAI 701
             T        I
Sbjct: 347 FVTPEDEHHFKI 358


>gi|209363862|ref|YP_001424084.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
 gi|212212853|ref|YP_002303789.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
 gi|212219099|ref|YP_002305886.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
 gi|215919015|ref|NP_819700.2| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           493]
 gi|206583900|gb|AAO90214.2| ATP-dependent RNA helicase [Coxiella burnetii RSA 493]
 gi|207081795|gb|ABS77088.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
 gi|212011263|gb|ACJ18644.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
 gi|212013361|gb|ACJ20741.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
          Length = 420

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 16/198 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII-----VEQIIR 550
            + + GF LP       L  E         ++ SAT      E    ++     +E   R
Sbjct: 171 RMLDMGF-LPDIRRILKLLPES-----RQNLLFSATFSKEIKELTDKLLHSPALIEVARR 224

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
            T        +     Q +       + ++   ++L+   TK  A  L++ L    +   
Sbjct: 225 NTAAARITHVVHPVDRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSA 284

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H       R+  +   + GK  VLV  ++   GLDI +   V   +        +   
Sbjct: 285 AIHGNKSQAARMRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFE-----LPDAAKD 339

Query: 671 LIQTIGRAARNVNSKVIL 688
            +  +GR  R  N  V +
Sbjct: 340 YVHRVGRTGRASNDGVAI 357


>gi|119572221|gb|EAW51836.1| hCG1998531, isoform CRA_g [Homo sapiens]
          Length = 484

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 274 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 327

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 328 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 387

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 388 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 446

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 447 MVDSKHSMNIL----NR---IQEHFNKK 467


>gi|134296056|ref|YP_001119791.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134139213|gb|ABO54956.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 516

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 68/195 (34%), Gaps = 25/195 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T++ SAT     L+   G +  +++     ++   +I S    +      ++    +  
Sbjct: 237 QTMLFSAT-----LDGKIGSLTSRLLNNPERIEIVAKIESRAN-IAQTVHYVDDRDHKDR 290

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   TK  A+ L   L +       +H ++    R   IR LR  
Sbjct: 291 LLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARNRTIRALRER 350

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
           +  VLV  ++   G+DIP    V   D  K          +  IGR  R   S   +   
Sbjct: 351 RVRVLVATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL- 404

Query: 692 TITKSIQLAIDETTR 706
            +  + Q A+    R
Sbjct: 405 -VHHAEQGALKRIER 418


>gi|331005215|ref|ZP_08328608.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
 gi|330420958|gb|EGG95231.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
          Length = 464

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 7/177 (3%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT      +  + I+   +E  + P       V   I     + +       
Sbjct: 178 KRQNLMFSATFSDDIRDLAKTIVNKPIEISVTPKNSTATTVTQWIHPVDKKQKPSLLVEL 237

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +   +  ++L+   TK  A  L  +L + +I+   +H       R   + D + GK  VL
Sbjct: 238 IYQHKWEQVLVFSRTKHGANKLATFLEKHSIKAAAIHGNKSQGARTRALADFKAGKVRVL 297

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           V  ++   GLDI +   V  +D             I   GRA     +  ++ AD I
Sbjct: 298 VATDIAARGLDIEQLPQVVNIDLP--NVAEDYVHRIGRTGRAGATGQAVSLVSADEI 352


>gi|260914551|ref|ZP_05921019.1| ATP-dependent RNA helicase RhlE [Pasteurella dagmatis ATCC 43325]
 gi|260631342|gb|EEX49525.1| ATP-dependent RNA helicase RhlE [Pasteurella dagmatis ATCC 43325]
          Length = 442

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 7/145 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++  R ++ V  +    +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  
Sbjct: 246 EKVSRGIVFVRRREYVRELSETLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVVTVLVAT 305

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   G+DI +   V   D        S  + +  IGR AR     V +           
Sbjct: 306 DVAARGIDIEDVSHVMNFD-----LPYSADTYLHRIGRTARAGKKGVAVSFVEAHD--YK 358

Query: 700 AIDETTRRREKQLEHNKKHNINPQS 724
            + +  R  E+ L+      + P++
Sbjct: 359 LLGKIKRYTEELLKARVIEGLEPRT 383


>gi|319425659|gb|ADV53733.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 481

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 64/186 (34%), Gaps = 10/186 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
              T++ SAT      +  Q ++ E     +   T       E+     + +       +
Sbjct: 182 VHQTMLFSATYSDAVKQLAQKMLNEPQWVNVADTTTASTVVQEVYRVDKRRKAELLSELV 241

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                 ++L+   TK  AE L + L    I     H +     R  ++ D +LGK  VLV
Sbjct: 242 GRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFKLGKLRVLV 301

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
             ++   GLDI    LV  L+             I  IGR  R     + I +       
Sbjct: 302 ATDVAARGLDIQALPLVINLELPFF-----AEDYIHRIGRTGRAGLAGRAISFVSPSDDE 356

Query: 697 IQLAID 702
           +   I+
Sbjct: 357 MLTEIE 362


>gi|90083495|dbj|BAE90830.1| unnamed protein product [Macaca fascicularis]
          Length = 478

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 268 QMLLFSAT-----FEDSVWKFAQKVVPEPNIIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 321

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 322 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 381

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 382 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 440

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 441 MVDSKHSMNIL----NR---IQEHFNKK 461


>gi|170932536|ref|NP_031942.2| ATP-dependent RNA helicase DDX19A [Mus musculus]
 gi|15030051|gb|AAH11270.1| Ddx19a protein [Mus musculus]
 gi|26340198|dbj|BAC33762.1| unnamed protein product [Mus musculus]
 gi|74138902|dbj|BAE27252.1| unnamed protein product [Mus musculus]
 gi|148679533|gb|EDL11480.1| mCG132574 [Mus musculus]
          Length = 478

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 268 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNREEKFQ 321

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 322 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 381

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 382 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 440

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 441 MVDSKHSMNIL----NR---IQEHFNKK 461


>gi|6014947|sp|Q61655|DD19A_MOUSE RecName: Full=ATP-dependent RNA helicase DDX19A; AltName: Full=DEAD
           box RNA helicase DEAD5; Short=mDEAD5; AltName: Full=DEAD
           box protein 19A; AltName: Full=Eukaryotic translation
           initiation factor 4A-related sequence 1
 gi|407992|gb|AAA53629.1| RNA helicase [Mus musculus]
          Length = 478

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 268 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNREEKFQ 321

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 322 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 381

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 382 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 440

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 441 MVDSKHSMNIL----NR---IQEHFNKK 461


>gi|324511469|gb|ADY44774.1| ATP-dependent RNA helicase DDX19A [Ascaris suum]
          Length = 267

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 69/187 (36%), Gaps = 27/187 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            +++ SAT     +   + II E ++         + +R     + ++       A +  
Sbjct: 52  QSLLFSATYDDAVIAFAESIIKEAVV---------ITVRREEQTLSNIKQYYVKCANREE 102

Query: 584 R---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +                ++   T++ AE L   +  R   V  +H E+   ER  +I+  
Sbjct: 103 KYEAVINLYGGLTIASAIIFCYTRKSAEWLAARMSARGHVVTLLHGELPIEERARVIQCF 162

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDAD---KEGFLRSKTSLIQTIGRAARNVNSK 685
           + G + VLV  N+   G+D+ +  +V   D      E       + +  IGR  R   + 
Sbjct: 163 KEGIYKVLVTTNVCARGIDVSQVTVVINYDPPLTFSETPQPDYETYLHRIGRTGRFGKAG 222

Query: 686 VILYADT 692
           + +   +
Sbjct: 223 IAINFVS 229


>gi|324505224|gb|ADY42250.1| ATP-dependent RNA helicase DDX19A [Ascaris suum]
          Length = 519

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 6/133 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   TK+  E L   L  +   V  +H E++  +R E+I     G+  VLV  N+   G
Sbjct: 367 IIFCRTKKSVEWLAAKLTGKGHDVVVLHGEMEVSQRAEVINSFAKGEHKVLVTTNVCARG 426

Query: 646 LDIPECGLVAILDAD-----KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           +DIP    V   D                + +  IGR  R     + +   +    + L 
Sbjct: 427 IDIPRVAAVINYDPPVVPTTSAEPEPDYDTYLHRIGRTGRFGRPGIAVNFVSSGLEVDL- 485

Query: 701 IDETTRRREKQLE 713
           I+   R  E+++E
Sbjct: 486 INRIGRHFEREVE 498


>gi|291390469|ref|XP_002711765.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 [Oryctolagus
           cuniculus]
          Length = 484

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 274 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNRDEKFQ 327

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 328 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREG 387

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 388 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 446

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 447 MVDSKHSMNIL----NR---IQEHFNKK 467


>gi|225075811|ref|ZP_03719010.1| hypothetical protein NEIFLAOT_00827 [Neisseria flavescens
           NRL30031/H210]
 gi|224952844|gb|EEG34053.1| hypothetical protein NEIFLAOT_00827 [Neisseria flavescens
           NRL30031/H210]
          Length = 300

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 74/194 (38%), Gaps = 21/194 (10%)

Query: 521 LRPTTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSA-------RTQVED 570
            +  T++ SAT  P   +L Q      E + +      +  VE           R  +E 
Sbjct: 19  KQRQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRNLLER 78

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++++      ++++   TK+  + +T  L  RNI  + +H +     R+E +   + 
Sbjct: 79  LIVDLHM-----NQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKE 133

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILY 689
           G   VLV  ++   GLDI E   V   +             +  IGR  R     V I  
Sbjct: 134 GTLRVLVATDVAARGLDIAELPFVINYE-----LPTQPEDYVHRIGRTGRAGADGVAISL 188

Query: 690 ADTITKSIQLAIDE 703
            D   + +  +I E
Sbjct: 189 MDKTEQKMFESIKE 202


>gi|224064015|ref|XP_002301349.1| predicted protein [Populus trichocarpa]
 gi|222843075|gb|EEE80622.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 12/137 (8%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  D R G    LV  +L   G
Sbjct: 366 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG 425

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +DI    +V   D     F ++  + +  +GR+ R  +  + +   T      L      
Sbjct: 426 IDIQAVNVVINFD-----FPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNL------ 474

Query: 706 RRREKQLEHNKKHNINP 722
             R +Q    +   I P
Sbjct: 475 -YRIEQELGTEIKQIPP 490


>gi|153001915|ref|YP_001367596.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151366533|gb|ABS09533.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 443

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 90/240 (37%), Gaps = 38/240 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +           +SH+++  I  +   +  R   L E GF  P        +  
Sbjct: 151 TPGRLLD--------LCKQSHISLDSIKHLVLDEADR---LLEMGF-WPDVQ-----KLM 193

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            +      T++ SAT     L +    + E+++    L     ++ S   ++E+    +N
Sbjct: 194 AFMPKLKQTLLFSAT-----LPEALDTLTEKLLVNEPLRVEAHKVNSVAGEIEEQLYLVN 248

Query: 577 LAAQQGL-----------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
             ++  +           ++L+ +  +  A+ + + L +  ++V  +H E     R + +
Sbjct: 249 KGSKAQVLIALLKQYQWPQVLVFISARDDADAVAKRLAKAGMKVAALHGEKDQAVRSQTL 308

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D +  +  VLV  +L+  G+ +    +V  LD        S    +  IGR AR     
Sbjct: 309 ADFKANRIQVLVATDLMARGIHVDALPVVINLD-----LPMSAPVYVHRIGRTARAGEKG 363


>gi|125564407|gb|EAZ09787.1| hypothetical protein OsI_32075 [Oryza sativa Indica Group]
          Length = 685

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 77/212 (36%), Gaps = 23/212 (10%)

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R+AR QV     +I     +G R ++   TK  A DL+  +       R +H +V   +R
Sbjct: 341 RAARAQV---IPDIIRCYSRGGRTIIFTETKESASDLSGLIA----GSRALHGDVAQAQR 393

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             I+   R GKF VLV  N+   GLDI +  L+   +  ++       + I   GR  R 
Sbjct: 394 EVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDV-----EAYIHRSGRTGRA 448

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEH---------NKKHNINPQSVKEKIMEV 732
            N+ V +         +  ++   R    + EH          +            + + 
Sbjct: 449 GNTGVAVML--FEPRYKFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDS 506

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
           + P+  E A     S     + L  K     +
Sbjct: 507 VIPVFREQAEQLLNSSGMSAVDLLAKALAKAV 538


>gi|33865454|ref|NP_897013.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. WH 8102]
 gi|33632623|emb|CAE07435.1| probable ATP-dependent RNA helicase DeaD [Synechococcus sp. WH
           8102]
          Length = 598

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 12/188 (6%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             ++ SAT         +  +    E  IR        +  RS    +    + +     
Sbjct: 221 QVVLFSATMPPEIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQRVLD 280

Query: 581 Q--GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
              G  +++   TK +   + E L     +V  ++ +V   +R   +  LR G  D+LV 
Sbjct: 281 ACGGEGVIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVA 340

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLD+   GLV   D   +       + +  IGR  R   +   +   T  +  +
Sbjct: 341 TDVAARGLDVDRIGLVINYDMPFD-----SEAYVHRIGRTGRAGRTGEAVLFVTPRE--R 393

Query: 699 LAIDETTR 706
             I+   R
Sbjct: 394 RFINNLER 401


>gi|311032733|ref|ZP_07710823.1| ATP-dependent RNA helicase [Bacillus sp. m3-13]
          Length = 449

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 19/197 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIR---SARTQVEDVYDEINLAA 579
             ++ SAT      +Q   ++ E  +I+ T    PP  +    +   Q +      NL  
Sbjct: 178 QLLLFSATLKEETEKQAVDLLKEPLVIKVTKEDLPPARVEHLYAVVDQRDKANVLANLLR 237

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           + G++ L  V        LTE L  + + V ++HSE    ER   +++ R  ++ VL+  
Sbjct: 238 EPGIKALAFVRDIGNLAVLTEKLLYKQLNVGFLHSESSKQERENAMKNFRKDEYPVLLAT 297

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   GLDI E   V   D  +E       S +   GR  R      ++           
Sbjct: 298 DVAARGLDIKELSHVIHYDLPEEV-----ESYVHRSGRTGRQGAEGTVISI--------- 343

Query: 700 AIDETTRRREKQLEHNK 716
            + E   RR KQ     
Sbjct: 344 -VSEREERRLKQFAREL 359


>gi|300120104|emb|CBK19658.2| unnamed protein product [Blastocystis hominis]
          Length = 620

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 67/379 (17%), Positives = 130/379 (34%), Gaps = 31/379 (8%)

Query: 340 PSHLEDVAWRVSMFGNDIEEISEFYPLTGQ------KIRNVETIKIYANSHYVTPRPTLN 393
           P+ ++  A  + + G D+  I++    TG        +  ++ +        +  +    
Sbjct: 202 PTPIQRQAIPIELKGMDMIGIAK----TGSGKTCAFVVPMLQYVIQAPIETRLQSKEQGP 257

Query: 394 TAM-KYIKEELKMRL-IELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLT- 450
            A+      EL  ++  + EK  +    +RL Q  +  +  +      +SI   S +L+ 
Sbjct: 258 LAVVMAPTRELAKQIRDDAEKLAQFCVDERLAQSRSPRI-RIACMVGGESIVEQSSFLSN 316

Query: 451 -GRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA--EYGFRLPSC 507
                   P  L + +    ++    +++ + +   M    F           G  L S 
Sbjct: 317 GCDILIGTPGRLLDCLERHFVVLNQTNYIVLDEADRMIDEGFEESVNAVMDAMGSTLKSE 376

Query: 508 MDNRPLRFEE----WNCLRPTTIVVSAT--PGSWELEQCQGIIVEQIIRPTGLVDPPVEI 561
            +    +  E       +  TTI+ SAT  P    + +       Q+   T      V+I
Sbjct: 377 EEEDIEKAAEGVASLTNMYRTTIMFSATMPPKVEAIAKRYMRCPVQVTIGTPSGTTKVDI 436

Query: 562 RSARTQVE--DVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           +     V   D    +    +      ++    K   + +T  L++   R   +   ++ 
Sbjct: 437 KQIINMVRESDKPSMLLKIIRNNETPAIVFCNRKETVDTVTRSLHDSGHRTVALRGGIQQ 496

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
             R E + D R G +D++V  N+   GLDI    LV   D        S    I  IGR 
Sbjct: 497 SRREEALEDFRRGVYDIMVATNVAARGLDIKGVKLVVNYD-----MPDSLELYIHRIGRT 551

Query: 679 ARNVNSKVILYADTITKSI 697
            R   + + +   T   S 
Sbjct: 552 GRAGATGLAVSLVTEKDSA 570


>gi|156547575|ref|XP_001602897.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 445

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 76/218 (34%), Gaps = 34/218 (15%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E+   + + ++ + +    V    ++           + +    Q    I +   T +
Sbjct: 253 PYEINLMEELTLKGVTQYYAFVQERQKVH--------CLNTLFSKLQINQSI-IFCNTTQ 303

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L + + +      Y+H+++    R  +  D R G    LV  +L   G+D+    +
Sbjct: 304 RVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRAGLCRNLVCSDLFTRGIDVQAVNV 363

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           V   D     F +   + +  IGR+ R  +  + +   T                     
Sbjct: 364 VINFD-----FPKMAETYLHRIGRSGRFGHLGIAINLITYEDR----------------- 401

Query: 714 HNKKHNINPQ--SVKEKIMEVIDPILLEDAATTNISID 749
            N  H I  +  +  + I +VIDP L       N S++
Sbjct: 402 FNL-HRIEQELGTEIKPIPKVIDPSLYVARPDDNNSLE 438


>gi|116074911|ref|ZP_01472172.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
 gi|116068133|gb|EAU73886.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
          Length = 449

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 66/192 (34%), Gaps = 13/192 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEI-RSARTQVE-DVYDEI 575
           R   ++ SAT      +   G++ +    QI  P        ++      + + D+   +
Sbjct: 192 RRQNLLFSATFSPSIRKLATGLLNDPLQIQITPPNQTARTVQQVVHPCDMKRKPDLLSHL 251

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              +    ++L+   TK  A  + E L    +    +H       R   ++  + G   V
Sbjct: 252 I-RSNDWQQVLVFSRTKHGANRVAEKLTNEGLVAAAIHGNKSQGARTRALQGFKDGSVRV 310

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTIT 694
           LV  ++   G+DI +   V  LD             +  IGR  R       I       
Sbjct: 311 LVATDIAARGIDIQQLPHVVNLD-----LPNVAEDYVHRIGRTGRAGECGHAISLVAAEE 365

Query: 695 KSIQLAIDETTR 706
             +  AI+ TTR
Sbjct: 366 ALLLKAIERTTR 377


>gi|109129175|ref|XP_001107645.1| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 3 [Macaca
           mulatta]
          Length = 448

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 238 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 291

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 292 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 351

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 352 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 410

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 411 MVDSKHSMNIL----NR---IQEHFNKK 431


>gi|33152628|ref|NP_873981.1| ATP-dependent RNA helicase [Haemophilus ducreyi 35000HP]
 gi|33148852|gb|AAP96370.1| cold-shock DEAD box protein-A [Haemophilus ducreyi 35000HP]
          Length = 606

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 74/201 (36%), Gaps = 35/201 (17%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TK    D+TE       R   ++ ++    R + +  L+ G+ D+LV  ++   
Sbjct: 248 AIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAAR 307

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLD+    LV   D           S +  IGR  R   S   +L+ +   + +   I++
Sbjct: 308 GLDVERISLVVNYD-----IPLDSESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEQ 362

Query: 704 -----------------TTRRREK---QLEHNKKHNINPQSVKEKIMEVIDPILLEDAAT 743
                              +RREK   ++    +H+       EK  E+++ +   D   
Sbjct: 363 LMKKPIDPVAIPNHQVLMEKRREKFKAKISKQLEHHD-----LEKYRELLENLFTADQDH 417

Query: 744 TNISIDAQQLSLSKKKGKAHL 764
             ++       +  ++ +  +
Sbjct: 418 EELAA----AMMMLQEKQKLI 434


>gi|21228658|ref|NP_634580.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
 gi|20907159|gb|AAM32252.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
          Length = 429

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 9/166 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-EDVYDEINLAAQQG 582
            T++ SAT     +   +  +   +   T     P ++     +V +D+   + +   Q 
Sbjct: 202 QTLLFSATITKDIVRLSRKYMENPVRVSTESYIDPQKLNQVVYKVQDDMKLSLLVYLLQN 261

Query: 583 LRI---LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            +    ++   TKR  + + + L + +I    +H  +   ER  I+     G   VLV  
Sbjct: 262 EKSNLGMVFCNTKRNTDKVAKNLRKSSINAVAIHGGLTQNERTRILEKFHSGNIGVLVCT 321

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           ++   GLDI     V   D  +E         I  IGR AR     
Sbjct: 322 DVAGRGLDIQGVSHVYNYDIPRES-----KQYIHRIGRTARAGTEG 362


>gi|294631256|ref|ZP_06709816.1| ATP-dependent RNA helicase DeaD [Streptomyces sp. e14]
 gi|292834589|gb|EFF92938.1| ATP-dependent RNA helicase DeaD [Streptomyces sp. e14]
          Length = 960

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 74/191 (38%), Gaps = 16/191 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE------ 574
           +  T++ SAT PG+      + +     IR T   D    + +    +   ++       
Sbjct: 245 KRQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTTQFIYRAHNMDKPEMV 304

Query: 575 --INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +GL  ++   TKR A DL + L +R      +H ++    R + +R  R GK
Sbjct: 305 ARILQAEGRGL-AMIFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGK 363

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            DVLV  ++   G+D+     V    + +E     + + +  IGR  R       I   D
Sbjct: 364 VDVLVCTDVAARGIDVEGVTHVINYQSPEE-----EKTYLHRIGRTGRAGAKGTAITLVD 418

Query: 692 TITKSIQLAID 702
                    I+
Sbjct: 419 WDDIPRWQLIN 429


>gi|256273404|gb|EEU08340.1| Dbp5p [Saccharomyces cerevisiae JAY291]
          Length = 449

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L      V  +H +++T ER  +I D R G+  VL+  N+L  G
Sbjct: 301 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 360

Query: 646 LDIPECGLVAILDADKEGFLRSKTS-LIQTIGRAARNVNSKVI--LYADTITKSIQLAI 701
           +DIP   +V   D       ++  +  I  IGR  R     V      D  + +I  AI
Sbjct: 361 IDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAI 419


>gi|221141602|ref|ZP_03566095.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|302751962|gb|ADL66139.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. JKD6008]
          Length = 506

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 80/193 (41%), Gaps = 15/193 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTG--LVDPPVE----IRSARTQVEDVYDEIN 576
            TI+ SAT P + +    Q +   +II+     + DP +E    I     + +   + ++
Sbjct: 177 QTILFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLD 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++L
Sbjct: 237 --VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINIL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLDI     V   D       +   S    IGR  R     + + + + I  
Sbjct: 295 VATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349

Query: 696 SIQLAIDETTRRR 708
                I++   R+
Sbjct: 350 DYIRQIEDANGRK 362


>gi|195474630|ref|XP_002089594.1| GE19181 [Drosophila yakuba]
 gi|194175695|gb|EDW89306.1| GE19181 [Drosophila yakuba]
          Length = 782

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 97/262 (37%), Gaps = 31/262 (11%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIR-SARTQVE 569
           C    T++ SAT  S +++    + +++ I+            L    + IR       E
Sbjct: 333 CKTRQTMLFSAT-MSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDRE 391

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   +          ++ V TK+ A  L   L    +R   +H  +   +R+E ++  +
Sbjct: 392 PILASLICRTFHDH-CMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFK 450

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
             + DVL+  ++   GLDI     V            +    I  +GR AR   + +   
Sbjct: 451 EEQIDVLIATDVAARGLDIVGVKTVINF-----VMPITTEHYIHRVGRTARAGRAGI--- 502

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK----HNINPQSVKEKIMEVIDPILLEDAATTN 745
                 S+ LA  E  R+  K +  N +    + I P  + EK    +  +  E     +
Sbjct: 503 ------SVSLA-GEKERKIVKDIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILD 555

Query: 746 ISIDAQQLSLSKKKGKAHLKSL 767
                +QL+ ++++     + L
Sbjct: 556 EEQAERQLAKTEQQLSKTERKL 577


>gi|120599647|ref|YP_964221.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120559740|gb|ABM25667.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 481

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 64/186 (34%), Gaps = 10/186 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
              T++ SAT      +  Q ++ E     +   T       E+     + +       +
Sbjct: 182 VHQTMLFSATYSDAVKQLAQKMLNEPQWVNVADTTTASTVVQEVYRVDKRRKAELLSELV 241

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                 ++L+   TK  AE L + L    I     H +     R  ++ D +LGK  VLV
Sbjct: 242 GRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFKLGKLRVLV 301

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
             ++   GLDI    LV  L+             I  IGR  R     + I +       
Sbjct: 302 ATDVAARGLDIQALPLVINLELPFF-----AEDYIHRIGRTGRAGLAGRAISFVSPSDDE 356

Query: 697 IQLAID 702
           +   I+
Sbjct: 357 MLTEIE 362


>gi|328884859|emb|CCA58098.1| putative ATP-dependent RNA helicase [Streptomyces venezuelae ATCC
           10712]
          Length = 874

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 15/176 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDE------ 574
           +  T++ SAT PG+      + +     IR T        + + +  V   ++       
Sbjct: 158 KRQTMLFSATMPGAVIGLARRYMSQPTHIRATSPDGEGATVANIKQHVYRAHNMDKPEMV 217

Query: 575 --INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
             I  A  +GL  ++   TKR A D+ E L  R      +H ++    R + +R  R GK
Sbjct: 218 SRILQANGRGL-AMIFCRTKRTAADIAEQLERRGFASGAVHGDLGQGAREQALRAFRNGK 276

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            DVLV  ++   G+D+     V    +        + + +  +GR  R  N    +
Sbjct: 277 VDVLVCTDVAARGIDVEGVTHVINYQS-----PEDEKTFLHRVGRTGRAGNKGTAV 327


>gi|296536687|ref|ZP_06898752.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
 gi|296262986|gb|EFH09546.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
          Length = 560

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 7/175 (4%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            T+  SAT      +     +       +     V   +    A  Q ED    +    +
Sbjct: 283 QTLFFSATMAPEIRKLADAFLQNPKTISVSAPASVATTITAGLAFVQPEDKRRALRRLIR 342

Query: 581 QG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                  L+    KR  + L + L +   +   +H ++    R   +   + G+  +LV 
Sbjct: 343 SQDVQNALIFCNRKRDVDILHKSLSKHGFKAGALHGDLPQSVRFATLEKFKAGELQLLVC 402

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            ++   G+DI     V   D             I   GRA R  ++  I  AD +
Sbjct: 403 SDVAARGIDIGGLSHVYNFDVPFRD--EDYVHRIGRTGRAGREGHAYTIATADDV 455


>gi|260800277|ref|XP_002595060.1| hypothetical protein BRAFLDRAFT_125765 [Branchiostoma floridae]
 gi|229280302|gb|EEN51071.1| hypothetical protein BRAFLDRAFT_125765 [Branchiostoma floridae]
          Length = 875

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 13/192 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI-------IRPTGLVDPPVEIRSART-QVEDVYDEI 575
            T++ SAT        C+ I+++ I             V   VEI  A   + + +   +
Sbjct: 416 QTLLFSATFKKRIERLCRDILMDPIKVVQGDLGEANEDVQQIVEIFPAGPPKWQWLTRRL 475

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +L+ V  K  +E+L   L  ++     +H ++   ER ++I D +     V
Sbjct: 476 VEFTSVG-SVLIFVTKKANSEELASNLKAQDFEAGLLHGDMDQSERNKVISDFKKKTIPV 534

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA--DTI 693
           +V  ++   GLDIP    V   D  ++  + + T  I   GRA   V     L A  D  
Sbjct: 535 MVATDVAARGLDIPSIKTVVNYDVARD--IDTHTHRIGRTGRAGNKVTDISTLKANSDNP 592

Query: 694 TKSIQLAIDETT 705
              +  A D T 
Sbjct: 593 LFQLIEACDMTN 604


>gi|206560480|ref|YP_002231244.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia
           J2315]
 gi|198036521|emb|CAR52418.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia
           J2315]
          Length = 514

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I ++Q +     +   V     R   + + D + 
Sbjct: 238 QTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIAQTVHYVDDRDHKDRLLDHLL 297

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  + ++   TK  A+ L   L +       +H ++    R   IR LR  +  VL
Sbjct: 298 -RDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARNRTIRALRERRVRVL 356

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S + +    +  +
Sbjct: 357 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGIAVSL--VHHA 409

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 410 EQGALKRIER 419


>gi|170059153|ref|XP_001865238.1| ATP-dependent RNA helicase abstrakt [Culex quinquefasciatus]
 gi|167878066|gb|EDS41449.1| ATP-dependent RNA helicase abstrakt [Culex quinquefasciatus]
          Length = 619

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 72/207 (34%), Gaps = 21/207 (10%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
                 + + GF      D R + F  +   R  T++ SAT         +  +V+ +  
Sbjct: 342 MDEADRMIDMGFE----EDVRTI-FSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPVTI 395

Query: 551 PTGL-------VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLY 603
             G        V   VE      +V  + D +         +L+    K+  + + EYL 
Sbjct: 396 NVGRAGAASMNVTQDVEYVKQEAKVVYLLDCLQKTPPP---VLIFAEKKQDVDAIHEYLL 452

Query: 604 ERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663
            + +    +H      ER   +   R  + DVLV  ++  +GLD P+   V   D     
Sbjct: 453 MKGVEAVAIHGGKDQEERYRSVEGFRTQEKDVLVATDVASKGLDFPDVQHVINYD----- 507

Query: 664 FLRSKTSLIQTIGRAARNVNSKVILYA 690
                 + +  IGR  R+ +  +    
Sbjct: 508 MPDDIENYVHRIGRTGRSGSKGLATTF 534


>gi|323447210|gb|EGB03146.1| hypothetical protein AURANDRAFT_39444 [Aureococcus anophagefferens]
          Length = 418

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
              + SAT                +E+     + ++ I +    V+   ++         
Sbjct: 219 QICLFSATFPVTVKNFKEKFIHNPYEINLMDDLTLKGITQFYAFVEERQKVH-------- 270

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
               +    +    + +   +    E L + + E      Y+H++++   R  +  + R 
Sbjct: 271 CLHTLFTKLEINQSV-IFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRN 329

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F ++  + +  IGRA R  +  + +  
Sbjct: 330 GSTRHLVSSDLFTRGIDIQSVNVVINFD-----FPKTSETYLHRIGRAGRFGHLGLAINL 384

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
            T      L       R E +L    K    P +++ ++
Sbjct: 385 ITFDDRFNL------YRIESELATEIK--PIPPTIEREL 415


>gi|313807189|gb|EFS45682.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
 gi|313819383|gb|EFS57097.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
 gi|313820647|gb|EFS58361.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
 gi|313825517|gb|EFS63231.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
 gi|314924891|gb|EFS88722.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
 gi|314978145|gb|EFT22239.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
 gi|314986302|gb|EFT30394.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
 gi|315088606|gb|EFT60582.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
          Length = 564

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 570 DVYDEINLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           D  + I    Q     ++++   TKR  + L++ L +R  + R +H ++  + R + ++ 
Sbjct: 289 DKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKK 348

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            R G+  +LV  ++   G+D+     V   +         + + +  IGR  R     
Sbjct: 349 FRHGEATILVATDVAARGIDVTGVSHVINHEC-----PEDEKTYVHRIGRTGRAGAKG 401


>gi|300772766|ref|ZP_07082636.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761069|gb|EFK57895.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 435

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 29/201 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            +  T++ SAT    E+++    I+E            VE+    T  E +   +   ++
Sbjct: 195 KKRQTLLFSAT-MPAEIQKLASHILEDP--------SKVEVTPESTTAEKIQQSVYFVSK 245

Query: 581 QGLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
              R               L+   TK  A+ + + L ++ I+   +H       R   + 
Sbjct: 246 SDKRHLLTHLLKSENIEHTLVFSRTKHGADRIAKDLAKQGIQAAAIHGNKSQSARQNALN 305

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSK 685
           + +  K  VLV  ++   G+DI +   V   D           S +  IGR  R   + K
Sbjct: 306 NFKDRKLRVLVATDIAARGIDIDDLSYVINFD-----LPNIPESYVHRIGRTGRAGKDGK 360

Query: 686 VILYADTITKSIQLAIDETTR 706
            I + D    +  L I+++ R
Sbjct: 361 AISFCDDEEYAYLLDIEKSIR 381


>gi|218261592|ref|ZP_03476346.1| hypothetical protein PRABACTJOHN_02014 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223947|gb|EEC96597.1| hypothetical protein PRABACTJOHN_02014 [Parabacteroides johnsonii
           DSM 18315]
          Length = 419

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 63/190 (33%), Gaps = 30/190 (15%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            +  ++  SAT    E+E+  G I+ +           VE+    + V D  D+     +
Sbjct: 178 KKRQSLFFSAT-MPPEIERLAGTILHEP--------EKVEVTPVSSTV-DTIDQSVYFVE 227

Query: 581 QGLR---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +  +               +L+   TK  A+ +   L +  I    +H +     R   +
Sbjct: 228 KVEKINLLKNLLEDRSLESVLVFTRTKYGADKVARVLNKSGIGAEAIHGDKGQNARQRAL 287

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              +     VL+  ++   G+D+     V   D           + +  IGR  R   S 
Sbjct: 288 SSFKDHTLRVLIATDIASRGIDVDHLSHVINYD-----LPNVPETYVHRIGRTGRAGRSG 342

Query: 686 VILYADTITK 695
           +      + +
Sbjct: 343 IAFSFCDVEE 352


>gi|221217955|ref|ZP_03589422.1| transcription-repair coupling factor [Borrelia burgdorferi 72a]
 gi|221192261|gb|EEE18481.1| transcription-repair coupling factor [Borrelia burgdorferi 72a]
          Length = 1125

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 98/253 (38%), Gaps = 22/253 (8%)

Query: 173 LLGVTGSGKTFTMAKV--IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L G  G  K F + K+       +  +++     L  ++ ++ +           V   +
Sbjct: 32  LTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTL-DKIKNDLQVITNQ------VFELN 84

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
           Y+ P  Y         K +  NE+I  +         +     +    S +  I    + 
Sbjct: 85  YFSPLVYKG----IGSKSTIFNERIKFL----FNFYKKNPGIYITVLKSLLSKIPDKNTL 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            + I +++   ++   ++  +L+   Y++     I G F V G+ I+I+P   E    R+
Sbjct: 137 LKNIYKIEKNTNINTADIEKTLITLGYEKTLRVTIPGEFTVKGEIIDIYP-FGEQNPIRI 195

Query: 351 SMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKE-ELKMRLI 408
           ++  + IEEI +F PLT  K    +   +I      +    T+NT    IK  E K  L 
Sbjct: 196 ALNFDKIEEIKKFNPLTQLKHDNEILEFQILPKKEIIWDDKTINTLKTKIKSVEYKKILE 255

Query: 409 E--LEKEGRLLEA 419
           E   +KE +  E 
Sbjct: 256 ELDFKKETKTEEM 268



 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 22/190 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +     I P   V     + S    +  +   I     +
Sbjct: 733 CLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESFSELL--IKHAIESELSR 790

Query: 582 GLRILL-------TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             ++ L           K + E LT Y      R+  +H ++   E   I+ +     + 
Sbjct: 791 DGQVFLVNHNIEELYYLKTLIERLTPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQ 845

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  G+DIP    + I +A+K G  +    L Q  GR  R        +    +
Sbjct: 846 ILLATTIIENGIDIPNANTIIINNANKFGLAQ----LYQLKGRVGRGSQKAYAYFLYQDS 901

Query: 695 KSI-QLAIDE 703
           + + + +I+ 
Sbjct: 902 EKLNERSIER 911


>gi|309781736|ref|ZP_07676469.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
 gi|308919377|gb|EFP65041.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
          Length = 498

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 76/238 (31%), Gaps = 31/238 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         V +  V + Q+  +   +  R     + GF LP       L   
Sbjct: 151 TPGRLLD--------HVQQRSVNLSQVRMLVLDEADRM---LDMGF-LPDLQRIINLLPA 198

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVED----- 570
                   T++ SAT            +   Q I           +R     V D     
Sbjct: 199 H-----RQTLLFSATFSPEIKRLAASYLRHPQTIEVARSNATAENVRQVIYTVPDNHKQA 253

Query: 571 -VYDEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            +   +   A+QGL  + ++   +K     L   L    I    +H +    ER++ +  
Sbjct: 254 ALVHLLRQRAEQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEA 313

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            + G  DVLV  ++   GLDI +   V   D        +    +  IGR  R   S 
Sbjct: 314 FKQGTVDVLVATDVAARGLDISQMPCVINFD-----LPFNAEDYVHRIGRTGRAGASG 366


>gi|149194827|ref|ZP_01871921.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
           TB-2]
 gi|149134986|gb|EDM23468.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
           TB-2]
          Length = 460

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 27/205 (13%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TK+  +D+ E+L       + +H ++   +R E+IR  +  + ++LV  ++  
Sbjct: 236 KSIVFCRTKKDVDDIAEFLSGAGFDAKGLHGDMDQRKREEVIRGFKSDRIEILVATDVAA 295

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAID 702
            GLD+     V               S +  IGR  R       I             I 
Sbjct: 296 RGLDVNNVSHVFNYH-----LPLDPESYVHRIGRTGRAGKEGMAISLVTPHEFRALNRIQ 350

Query: 703 ETTRR-------------REKQLEHNKKHNINPQSVKEKIMEVID--------PILLEDA 741
           + ++              +E Q   +K  NI+P     +I+E +          I L   
Sbjct: 351 KISKIILKEIPTLADVKDKEIQKIIDKLSNIDPTPKSIEIIEELQNEYDLMTIAIKLASM 410

Query: 742 ATTNISIDAQQLSLSKKKGKAHLKS 766
                S    ++  S K+ K  ++ 
Sbjct: 411 LFDKESDGKDRIGKSIKEAKRLIER 435


>gi|154252927|ref|YP_001413751.1| DEAD/DEAH box helicase domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154156877|gb|ABS64094.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 448

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 97/263 (36%), Gaps = 40/263 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         +++ HV + + S +   +  R     + GF      D R +   
Sbjct: 134 TPGRLLD--------LMNQKHVNLSRTSLLVLDEADRM---LDMGFI----RDVRKIIAA 178

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
                +  +++ SAT     ++     I+ + +R     +          +++     ++
Sbjct: 179 --MPRQRQSLLFSAT-MPSSIQHLADEILREPVRVEVTPEVV-----TVDKIDQRVLHVD 230

Query: 577 LAAQQGL-----------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
              ++ L           R+++   TK  A  ++E L +  +    +H       R   +
Sbjct: 231 GKRKRELLAKLLDNSELSRVIVFTRTKHCANRVSEQLDKSGVLSEAIHGNKSQGARQRAL 290

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              R GK  VLV  ++   G+D+ +   V   +   E       S +  IGR AR   S 
Sbjct: 291 DMFRNGKARVLVATDIAARGIDVSDITHVINYELPNE-----PESYVHRIGRTARAGKSG 345

Query: 686 V-ILYADTITKSIQLAIDETTRR 707
           + + + D   +S   +I++ T+R
Sbjct: 346 IALSFCDASERSHLRSIEKLTKR 368


>gi|117619806|ref|YP_855172.1| DEAD-box ATP dependent DNA helicase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561213|gb|ABK38161.1| ATP-dependent RNA helicase, dead box family [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 406

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 32/202 (15%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR--SARTQVEDVYDEINLAAQQ 581
            T++ SAT           +  E     TGL+  PV +      +  +D+ + + L  + 
Sbjct: 175 QTLLFSAT-----------LPAELDALATGLLTEPVRVEADPRNSVADDIEERLYLVNKS 223

Query: 582 GL--------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
                           ++L+ +  +  A+ +   L +  I V  +H E +   R + + D
Sbjct: 224 SKVPALISLLKAHEWPQVLVFISARDDADGVARKLAKAGITVAALHGEKEQAVREQALGD 283

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + GK  VLV  +L+  G+ +    LV  LD        S    +  IGR AR   S + 
Sbjct: 284 FKAGKVRVLVATDLMARGIHVEALPLVINLD-----LPASAPVYVHRIGRTARAGRSGLA 338

Query: 688 LYADTITKSIQLAIDETTRRRE 709
           +      ++  LA   T   RE
Sbjct: 339 ISLTCHGEADTLAAIRTLTGRE 360


>gi|50557160|ref|XP_505988.1| YALI0F28391p [Yarrowia lipolytica]
 gi|74659615|sp|Q6C024|PRP28_YARLI RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|49651858|emb|CAG78800.1| YALI0F28391p [Yarrowia lipolytica]
          Length = 575

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 90/275 (32%), Gaps = 42/275 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFR---------LPSC 507
            P  L +         +D   + + Q   +   +  R     + GF          LPS 
Sbjct: 296 TPGRLLD--------VIDRRLLVLNQCCYVVMDEADRM---VDMGFEEQVQKVLASLPSS 344

Query: 508 MDNRPLRFEE-----WNCLRPTTIVVSAT-PGSWE------LEQCQGIIVEQIIRPTGLV 555
                    E            T++ +AT P + E      L +   + +    +    V
Sbjct: 345 NAKPDSDEAENLAAVSTRRYRQTMMYTATMPVAIEKLAKKYLRRPGIVTIGSAGQAGSTV 404

Query: 556 DPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
              VE  +   + +    +I    Q    I++ +  KR  E +++ L     R   +H  
Sbjct: 405 TQLVEFLNTDEKRKRRLLDIISKRQYRPPIVVFLNYKRDCEAVSDALVAAGWRTAIIHGG 464

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
            +  +R + ++ L+ G  DVLV  ++   GLDIP   LV            +  S    I
Sbjct: 465 KQQEQREQAVQHLKRGAVDVLVATDVAGRGLDIPNVSLVVNF-----QMANNIESYTHRI 519

Query: 676 GRAARNVNSKVILYA-----DTITKSIQLAIDETT 705
           GR  R       +       D +   ++  I  + 
Sbjct: 520 GRTGRAGKRGTAVTFLGQEDDDVLFELKQMISRSE 554


>gi|294929903|ref|XP_002779412.1| helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239888520|gb|EER11207.1| helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 393

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 9/132 (6%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+   +   +++GL  L+ V TKR A++L   L         +H +   +ER E +R+ +
Sbjct: 137 DLRRLLEEQSEEGL-TLIFVETKRRADELEHVLCRDRYPATSIHGDRSQMEREEALREFK 195

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   +LV  ++   GLDI     V   D        +    +  IGR  R  N      
Sbjct: 196 SGVRPILVATDVAARGLDISHVNHVINYD-----LPHNIDDYVHRIGRTGRVGNLGT--- 247

Query: 690 ADTITKSIQLAI 701
           A +       AI
Sbjct: 248 ATSFVNESGRAI 259


>gi|225454138|ref|XP_002270379.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147785187|emb|CAN75439.1| hypothetical protein VITISV_000835 [Vitis vinifera]
          Length = 491

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 12/137 (8%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  D R G    LV  +L   G
Sbjct: 358 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG 417

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +DI    +V   D     F ++  + +  +GR+ R  +  + +   T      L      
Sbjct: 418 IDIQAVNVVINFD-----FPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNL------ 466

Query: 706 RRREKQLEHNKKHNINP 722
             R +Q    +   I P
Sbjct: 467 -YRIEQELGTEIKQIPP 482


>gi|139473559|ref|YP_001128275.1| DEAD box helicase family protein [Streptococcus pyogenes str.
           Manfredo]
 gi|134271806|emb|CAM30039.1| DEAD box helicase family protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 539

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRP-----TGLVDPPVEIRSARTQVEDVYDEINL 577
            T++ SAT P   +    + +   + ++      T +      +R    +  D    +  
Sbjct: 176 QTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLMD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              Q    ++   TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV
Sbjct: 236 -VNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +  
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIT-----QDPESYVHRIGRTGRAGKSGESITFVSPNEMG 349

Query: 698 QLAIDETTRRREKQL----------EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
            L++ E     +KQ+              K  +  + ++    +       +      + 
Sbjct: 350 YLSMIENL--TKKQMKPLRPATAEEAFQAKKKVALKKIERDFADETIRSNFDKFKGDAVQ 407

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQ 770
           + A+    + ++   ++ SL  Q
Sbjct: 408 LAAEF---TPEELALYILSLTVQ 427


>gi|311257030|ref|XP_003126917.1| PREDICTED: ATP-dependent RNA helicase DDX19A-like isoform 1 [Sus
           scrofa]
          Length = 478

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 268 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNRDEKFQ 321

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 322 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREG 381

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 382 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 440

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 441 MVDSKHSMNIL----NR---IQEHFNKK 461


>gi|317052468|ref|YP_004113584.1| transcription-repair coupling factor [Desulfurispirillum indicum
           S5]
 gi|316947552|gb|ADU67028.1| transcription-repair coupling factor [Desulfurispirillum indicum
           S5]
          Length = 1048

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 68/203 (33%), Gaps = 20/203 (9%)

Query: 192 MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSI 251
             R   +  P+   A Q+Y    +                  P  Y+   +    + +  
Sbjct: 37  TGRRFFLSLPDDDSARQVYRTINSLN---------------IPCVYLSAWEILPGEANDF 81

Query: 252 NEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSS 311
                  R  A  +++  +  +VV++           S   M  +L+ G   +  +L  +
Sbjct: 82  YAPNAAARAQAIDAIVGGSAPVVVATHKSTVQKIPPVSQRIM--ELRHGYRYKIDDLAQT 139

Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371
           LV + Y R  I    G F + GD ++I   +     +R+  F  ++E I+ F   T    
Sbjct: 140 LVDKGYVRVPIVDDFGQFALRGDIMDI---YCPGGPFRLEFFDEELERITRFDVDTQTSQ 196

Query: 372 RNVETIKIYANSHYVTPRPTLNT 394
             +E + +     Y      L  
Sbjct: 197 EGLEELMVMQYREYSQSPWELER 219



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 69/183 (37%), Gaps = 9/183 (4%)

Query: 525 TIVVSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            + ++ATP    L     GI    +I         ++      Q E +   +     +G 
Sbjct: 669 VLTLTATPIPRTLHMAMGGIKKMSVIETPPKDRRAIKTEVIEFQDEILRQGLMREFHRGG 728

Query: 584 RILLT---VLTKRMAE-DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +I      V T       +   + E  + V   H ++   +   ++ +   G+ DVLV  
Sbjct: 729 QIYFLHNRVETINAIALRVQGLIPEARVAVA--HGQMSEAQLERVMLEFSAGEHDVLVCS 786

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-YADTITKSIQ 698
           +++  GLD+P    + I  AD  G  +    L   +GR+ R     +I+   DT+    Q
Sbjct: 787 SIVESGLDVPRANTIFINRADTLGLAQ-LYQLRGRVGRSERRAFCYLIIPPFDTLHDVAQ 845

Query: 699 LAI 701
             I
Sbjct: 846 KRI 848


>gi|238020287|ref|ZP_04600713.1| hypothetical protein GCWU000324_00164 [Kingella oralis ATCC 51147]
 gi|237867267|gb|EEP68273.1| hypothetical protein GCWU000324_00164 [Kingella oralis ATCC 51147]
          Length = 468

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 71/184 (38%), Gaps = 11/184 (5%)

Query: 524 TTIVVSAT--PGSWELEQC---QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
            T++ SAT  P   +L Q       IVE   + T   +    + S  +  +    E  + 
Sbjct: 185 QTLLFSATFAPAIRKLAQDFMNAPQIVEVAAQNTTNANVEEHVISIDSHRKRELLERLIV 244

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                ++++   TK+ A+ ++  L  R +    +H +     R++++   + G+  VLV 
Sbjct: 245 DLNMNQVIVFCKTKQSADQVSRDLVRRGLSANAIHGDKSQQTRLDVLNQFKSGELRVLVA 304

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   GLDI E   V   +             +  IGR  R     V I   D   + +
Sbjct: 305 TDVAARGLDIAELPFVVNYE-----MPTQAEDYVHRIGRTGRAGADGVAISLMDETEQKM 359

Query: 698 QLAI 701
             AI
Sbjct: 360 YEAI 363


>gi|211939444|pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
 gi|211939445|pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
          Length = 445

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 239 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 292

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 293 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 352

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 353 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 411

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 412 MVDSKHSMNIL----NR---IQEHFNKK 432


>gi|188587881|ref|YP_001922673.1| putative ATP-dependent RNA helicase RhlE [Clostridium botulinum E3
           str. Alaska E43]
 gi|188498162|gb|ACD51298.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 432

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 73/199 (36%), Gaps = 29/199 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
                ++ SAT    E++     I++  ++        VE+    + ++ +   +    +
Sbjct: 179 KVRQNLLFSAT-MPSEVKSLVNSILKDPVK--------VEVAPVSSTIDTITQGVYFVTK 229

Query: 581 QGLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +  +              +L+   TK  A ++ + L +     + +H       R   + 
Sbjct: 230 KDKKSLLVHLLKDESIKSLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALS 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + + GK  VLV  ++   G+D+     V   D           + +  IGR  R  NS V
Sbjct: 290 NFKEGKIRVLVATDIAARGIDVDGLSHVINYD-----LPDVPETYVHRIGRTGRAGNSGV 344

Query: 687 -ILYADTITKSIQLAIDET 704
            I + D   KS    I++T
Sbjct: 345 AISFCDVDEKSSLKDIEKT 363


>gi|187934290|ref|YP_001887690.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722443|gb|ACD23664.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str.
           Eklund 17B]
          Length = 432

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 73/199 (36%), Gaps = 29/199 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
                ++ SAT    E++     I++  ++        VE+    + ++ +   +    +
Sbjct: 179 KVRQNLLFSAT-MPSEVKSLVNSILKDPVK--------VEVAPVSSTIDTITQGVYFVTK 229

Query: 581 QGLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +  +              +L+   TK  A ++ + L +     + +H       R   + 
Sbjct: 230 KDKKSLLVHLLKDESIKSLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALS 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + + GK  VLV  ++   G+D+     V   D           + +  IGR  R  NS V
Sbjct: 290 NFKEGKIRVLVATDIAARGIDVDGLSHVINYD-----LPDVPETYVHRIGRTGRAGNSGV 344

Query: 687 -ILYADTITKSIQLAIDET 704
            I + D   KS    I++T
Sbjct: 345 AISFCDVDEKSALKDIEKT 363


>gi|134095351|ref|YP_001100426.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
 gi|133739254|emb|CAL62303.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 449

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 79/249 (31%), Gaps = 18/249 (7%)

Query: 524 TTIVVSATPGSWELEQCQGI-----IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
             ++ SAT  +       G+     ++E   R + +     +I       +  +  +   
Sbjct: 185 QNLLFSATFSNEIKALADGLLNSPAMIEVARRNSTVEVIEQKIHPVD--RDKKHPMLAHL 242

Query: 579 AQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +     ++L+   TK  A  L E L +  I    +H       R   + + + G   VL
Sbjct: 243 IKTNNWSQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDGSLQVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   G+DI +   V   D             +  IGR  R   +   +        
Sbjct: 303 VATDIAARGIDIDQLPHVVNYD-----LPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEL 357

Query: 696 SIQLAIDETTRRR---EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
            +   I++  +R+   E  +      N  PQ ++ +  +               S  A  
Sbjct: 358 DMLKDIEKLIKRKLPSEVIVGFEPDLNAKPQPIQRRSNDAPGRRPQGRGNAPAKSAKAPG 417

Query: 753 LSLSKKKGK 761
              S   G+
Sbjct: 418 AKPSGPNGQ 426


>gi|125606362|gb|EAZ45398.1| hypothetical protein OsJ_30047 [Oryza sativa Japonica Group]
          Length = 685

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 77/212 (36%), Gaps = 23/212 (10%)

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R+AR QV     +I     +G R ++   TK  A DL+  +       R +H +V   +R
Sbjct: 341 RAARAQV---IPDIIRCYSRGGRTIIFTETKESASDLSGLIA----GSRALHGDVAQAQR 393

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             I+   R GKF VLV  N+   GLDI +  L+   +  ++       + I   GR  R 
Sbjct: 394 EVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDV-----EAYIHRSGRTGRA 448

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEH---------NKKHNINPQSVKEKIMEV 732
            N+ V +         +  ++   R    + EH          +            + + 
Sbjct: 449 GNTGVAVML--FEPRYKFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDS 506

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
           + P+  E A     S     + L  K     +
Sbjct: 507 VIPVFREQAEQLLNSSGMSAVDLLAKALAKAV 538


>gi|39970591|ref|XP_366686.1| hypothetical protein MGG_02762 [Magnaporthe oryzae 70-15]
 gi|149210055|ref|XP_001522402.1| hypothetical protein MGCH7_ch7g509 [Magnaporthe oryzae 70-15]
 gi|86196464|gb|EAQ71102.1| hypothetical protein MGCH7_ch7g509 [Magnaporthe oryzae 70-15]
 gi|145017425|gb|EDK01788.1| hypothetical protein MGG_02762 [Magnaporthe oryzae 70-15]
          Length = 619

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 87/245 (35%), Gaps = 27/245 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
            + +DE+      ++  +  D   K  ++  G    +  +   +++  ++   P  I   
Sbjct: 290 YVVIDEAD---EMLTADWEED--MKKIMSAGG----AAQE---IKYLLFSATFPKKIRDL 337

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQGLRILL 587
           A     E +  Q  +       + ++   +E      +  + D+ + +        R ++
Sbjct: 338 AREHLSE-DHVQLRVGRAGSTHSNIIQTVIETAPMNKKRALNDLINSMPP-----QRTII 391

Query: 588 TVLTKRMAEDLTEYL-YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
            V  K  A++L +YL  E  +    MH++    ER + +R  R G   +LV   +   G+
Sbjct: 392 FVNNKWTADELDDYLYNECKLPCTSMHADRTQREREDALRAFRAGTAPILVTTGVTARGI 451

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI--LYADT---ITKSIQLAI 701
           D+     V   D                IGR  R  N  +    Y D    I   +   +
Sbjct: 452 DVRNVAHVVNYDLPSMDHG-GIEEYTHRIGRTGRIGNKGLATSFYTDRDEAIASVLVRTM 510

Query: 702 DETTR 706
            ET +
Sbjct: 511 LETNQ 515


>gi|332884045|gb|EGK04325.1| hypothetical protein HMPREF9456_01353 [Dysgonomonas mossii DSM
           22836]
          Length = 374

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 28/191 (14%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINL----- 577
             T+  SAT             +  + R        VE+  A + ++ +   +       
Sbjct: 180 KQTLFFSAT---------MPSTIASLSRSILRDPLKVEVTPASSVIDTIKQYLYFVEKQE 230

Query: 578 ---------AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
                       +   +L+   TK  A+ +   L +  I    +H       R   + + 
Sbjct: 231 KKDLLINLLKKDKKQSVLVFSRTKHGADKIARLLCKAGIGSEAIHGNKSQNARQRALTNF 290

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +  K  VL+  ++   G+D+ +  LV   D           + +  IGR  R  NS   L
Sbjct: 291 KSQKTRVLIATDIAARGIDVDQLELVINYD-----LPDVPETYVHRIGRTGRAGNSGTAL 345

Query: 689 YADTITKSIQL 699
              +  ++  L
Sbjct: 346 TFCSAEENAML 356


>gi|325003093|ref|ZP_08124205.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
          Length = 471

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 15/180 (8%)

Query: 524 TTIVVSAT-PG-SWELEQCQGIIVEQIIRPTGLVDPPVE---IRSARTQVEDVYDEINLA 578
            T++ SAT PG    L +   +     IR      P  E   +R     V   +  + L 
Sbjct: 215 QTVLFSATMPGRIQSLARTH-LSDPADIRIKREATPEGEAPKVRQTAYHVPRSHVTVALG 273

Query: 579 A----QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                +Q    ++   T+   + +TE L  R +R   +H  +    R  ++  LR G+ +
Sbjct: 274 RVLEMEQPTAAIVFCRTRADVDAVTETLTARGLRAEALHGGMDQEHRTRVVERLRAGRTE 333

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   GLDI     V   D        S  S +  IGR  R     V +   T  
Sbjct: 334 LLVATDVAARGLDIDSLTHVVNHDV-----PSSPESYVHRIGRVGRAGREGVAITLVTPG 388


>gi|297159148|gb|ADI08860.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 652

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 83/226 (36%), Gaps = 23/226 (10%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +D        A +  R ++ V T+  A+ + E L +  +R   +H  +    R   + D 
Sbjct: 272 KDKAPVTAAIAARKGRTIIFVRTQLGADRVAEQLRDAGVRAEALHGGMTQGARTRTLADF 331

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G  +VLV  ++   G+ +    LV  +D             +   GR AR   S  ++
Sbjct: 332 KDGYVNVLVATDVAARGIHVDGIDLVLNVDP-----AGDHKDYLHRSGRTARAGQSGTVV 386

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNIN-PQSVKEKIMEVIDPILLEDAATTNIS 747
                 +           RR+      +   ++  + +        + +     A +   
Sbjct: 387 SLALPHQ-----------RRQIFRLM-EDAGVDASRHIVGGAGVFDEDVARITGARSLTE 434

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
           + A+  + + K+ +  ++ L +++  A        AA +R+E  RL
Sbjct: 435 VQAESAANAAKQAERDVQDLTRELDKAQR-----RAAELREEADRL 475


>gi|296116543|ref|ZP_06835153.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976755|gb|EFG83523.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 539

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 58/187 (31%), Gaps = 11/187 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
              T+  SAT            +    E  +     V   +E      + +D    +   
Sbjct: 224 IRQTLFFSATMAPEIRRLADMFLHNPKEITVSRPSSVASTIETGLVIVEEDDKRRALRKL 283

Query: 579 AQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            ++      ++    KR  + L + L +       +H ++    R   +   + G+  +L
Sbjct: 284 LRESDMQNAIIFCNRKRDVDVLCKSLLKHGFSAGALHGDLPQSLRFSTLEAFKSGELKIL 343

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITK 695
           V  ++   G+DI     V   D             +  IGR  R   +      A    +
Sbjct: 344 VCSDIAARGIDIGGLSHVFNFD-----LPFHAEDYVHRIGRTGRAGRTGHAYSLATPYEQ 398

Query: 696 SIQLAID 702
            +  AI+
Sbjct: 399 PLAEAIE 405


>gi|332846349|ref|XP_003339334.1| PREDICTED: ATP-dependent RNA helicase DDX19A isoform 3 [Pan
           troglodytes]
 gi|194388884|dbj|BAG61459.1| unnamed protein product [Homo sapiens]
          Length = 388

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 178 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 231

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 232 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 291

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 292 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 350

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 351 MVDSKHSMNIL----NR---IQEHFNKK 371


>gi|145640383|ref|ZP_01795967.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|145274969|gb|EDK14831.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.4-21]
          Length = 402

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 77/231 (33%), Gaps = 32/231 (13%)

Query: 470 LLFVDESHVTIPQISGMYRG-----DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +L  DE+   +    G            RK TL      L S      L  +    L   
Sbjct: 153 MLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL------LFSATLEGELLVDFAERLLND 206

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + V A P   E ++                       S   +++ +   I    ++  R
Sbjct: 207 PVKVDAEPSRRERKKINQWYYHAD--------------SNEHKIKLLARFIE--TEEVTR 250

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++   
Sbjct: 251 GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           G+DI +   V   D        S  + +  IGR AR       +       
Sbjct: 311 GIDIDDVSHVMNFD-----LPYSADTYLHRIGRTARAGKKGTAVSFVEAHD 356


>gi|145636310|ref|ZP_01791979.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
 gi|145270475|gb|EDK10409.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
          Length = 439

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 63/306 (20%), Positives = 104/306 (33%), Gaps = 55/306 (17%)

Query: 470 LLFVDESHVTIPQISGMYRG-----DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +L  DE+   +    G            RK TL      L S      L  +    L   
Sbjct: 153 MLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL------LFSATLEGELLVDFAERLLND 206

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + V A P   E ++                       S   +++ +   I    ++  R
Sbjct: 207 PVKVDAEPSRRERKKINQWYYHAD--------------SNEHKIKLLARFIE--TEEVTR 250

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++   
Sbjct: 251 GIVFVRRREDARELSEILRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+DI +   V   D        S  + +  IGR AR       +          L     
Sbjct: 311 GIDIDDVSHVMNFD-----LPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLG---- 361

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
                      K      + +K +I+E ++P        T    D +  S+SKK+ KA +
Sbjct: 362 -----------KIKRYTEEILKARILEGLEP-------RTKPPKDGEVKSVSKKQ-KARI 402

Query: 765 KSLRKQ 770
           K  R+ 
Sbjct: 403 KEKRED 408


>gi|126343381|ref|XP_001380653.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
           [Monodelphis domestica]
          Length = 744

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 16/184 (8%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   ++ + + T      VE  + +         + 
Sbjct: 325 PQTLLFSATCPQWVYKVAKKYMKTKYEEIDLVGKMTQKTATTVEHLAIQCHWSQRAAVIG 384

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D I + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 385 DVIQVYSGNDGRAIIFCETKKNVAEMA-LNPHIKQNAQCLHGDIAQSQREITLKGFREGS 443

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 444 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 498

Query: 693 ITKS 696
             + 
Sbjct: 499 PNER 502


>gi|126305162|ref|XP_001375627.1| PREDICTED: similar to DEAD Box Protein 5 [Monodelphis domestica]
          Length = 535

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 325 QMLLFSAT-----FEDSVWRFAQKVVPDPNIIKLKRE-EETLDTIKQYYVMCNNRDEKFQ 378

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 379 ALCNLYGAITIAQAMIFCHTRKTAGWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 438

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 439 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 497

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 498 MVDSKHSMNIL----NR---IQEHFNKK 518


>gi|119505184|ref|ZP_01627259.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080]
 gi|119458875|gb|EAW39975.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080]
          Length = 465

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 30/195 (15%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T+++SAT             +++I R        + + +     E V +++    Q+  
Sbjct: 180 QTLLLSAT---------FPDDIKKISRSIQKNPIQITVDAEVVHDEVVLEQVFFEVQKHE 230

Query: 584 R---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           R                ++   TK+   ++  +L E +I    +H +++  ER +++   
Sbjct: 231 RNVALLALFEHYRPANAMVFCNTKKQCAEVARFLREHDIEAAAIHGDLEQRERDQVLLQF 290

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVI 687
                 VLV  ++   GLDIP   +V   +       R   + +  IGR  R   S K  
Sbjct: 291 ANNSCPVLVASDVAARGLDIPSLEMVVNFE-----LPRDADTYVHRIGRTGRAGESGKAF 345

Query: 688 LYADTITKSIQLAID 702
                        I+
Sbjct: 346 SIVTPPEAPRMRVIE 360


>gi|56694884|ref|YP_164394.1| DEAD box family helicase [Bacillus phage BCJA1c]
 gi|52631311|gb|AAU85063.1| DEAD box family helicase [Bacillus phage BCJA1c]
          Length = 526

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 120/330 (36%), Gaps = 34/330 (10%)

Query: 465 IPEDSL--LFVDESHVTIPQISGMYRGDFHRKATLAEYGF-RLPSCMDNRPLRFEEWNCL 521
            P+D    + +DE+H  +          F     L   G    P   D R L    +  L
Sbjct: 111 FPKDFFDTIIIDEAHHCVSDSYQRVLQYFDSANVL---GVTATPDRSDMRNLG-SYFESL 166

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEI---NL 577
                +  A   G     +   I +E  +   G            + ++   + I     
Sbjct: 167 AFEYTLPKAIKEGYLSPIKALTIPLELDLSGVGQQAGDFAAGQLGSALDPYLESIADEMA 226

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              +  + ++ +   + ++  TE L ++  +   ++ + K  +R EI+ D    K++VL 
Sbjct: 227 KVAKDRKTVVFLPLVKTSQKFTELLNKKGFKAAEVNGDSK--DRAEILEDFDNDKYNVLC 284

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS 696
              LL EG D P    V +L   K   L S     Q +GR  R    K  +L  D +  +
Sbjct: 285 NSMLLTEGWDCPSVDCVVVLRPTKVRSLYS-----QMVGRGTRLHPGKTELLLLDFLWHT 339

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM--------EVIDPILLEDAATTNISI 748
            +  +          +  N++      ++ +KI         E ++    ED        
Sbjct: 340 DRHELCHPAH----LIAENEE---VANAMTKKIEESGVPLDLEAVEEQAAEDVVAQREEA 392

Query: 749 DAQQLSLSKKKGKAHLKSLRKQMHLAADNL 778
            A+QL+  K++ +  +  L+ +M + A++L
Sbjct: 393 LAKQLAEMKRRKRKLVDPLQFEMSIQAEDL 422


>gi|115480217|ref|NP_001063702.1| Os09g0520700 [Oryza sativa Japonica Group]
 gi|75322251|sp|Q650T9|RH7_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 7
 gi|52076165|dbj|BAD46678.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113631935|dbj|BAF25616.1| Os09g0520700 [Oryza sativa Japonica Group]
          Length = 696

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 77/212 (36%), Gaps = 23/212 (10%)

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R+AR QV     +I     +G R ++   TK  A DL+  +       R +H +V   +R
Sbjct: 352 RAARAQV---IPDIIRCYSRGGRTIIFTETKESASDLSGLIA----GSRALHGDVAQAQR 404

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             I+   R GKF VLV  N+   GLDI +  L+   +  ++       + I   GR  R 
Sbjct: 405 EVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDV-----EAYIHRSGRTGRA 459

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEH---------NKKHNINPQSVKEKIMEV 732
            N+ V +         +  ++   R    + EH          +            + + 
Sbjct: 460 GNTGVAVML--FEPRYKFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDS 517

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
           + P+  E A     S     + L  K     +
Sbjct: 518 VIPVFREQAEQLLNSSGMSAVDLLAKALAKAV 549


>gi|304398130|ref|ZP_07380005.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304354416|gb|EFM18788.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 430

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 80/238 (33%), Gaps = 41/238 (17%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNR 511
           L +Y          ++HV +  I  M   +  R   L   GF         R+P      
Sbjct: 145 LIDY--------AKQNHVNLGAIQVMVLDEADRMFDL---GFIKDIRWLFRRMPPATQRL 193

Query: 512 PLRFEEWNCLRPTTI----VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
            + F      R   +    + SA     E EQ  G    +I           ++R  +T 
Sbjct: 194 SMLFSATLSYRVRELAFEHMNSAEYVEVEPEQKTG---HRIQEELFYPSNEEKMRLLQTL 250

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +E+         +   R ++   TK   ED+  +L     RV  +  +V   +R+ I+ D
Sbjct: 251 LEE---------EWPDRAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDD 301

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              G  D+LV  ++   GL IP    V   D             +  IGR  R   S 
Sbjct: 302 FTKGDVDILVATDVAARGLHIPAVTHVFNYD-----LPDDCEDYVHRIGRTGRAGASG 354


>gi|317129136|ref|YP_004095418.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315474084|gb|ADU30687.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 528

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 76/232 (32%), Gaps = 40/232 (17%)

Query: 482 QISGMYRGDFHRKATLAEYGFR------LPSCMDNRPLRFEEWNCLRPTTIVVSAT--PG 533
           Q+  ++         + + GF       L     NR             T++ SAT  P 
Sbjct: 140 QLRSVHTLILDEADEMLDMGFIEDIEKILQQVNTNR------------QTMLFSATMPPP 187

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV------EDVYDEINLAAQQGLRI-- 585
             +L        +Q+    G V        +  QV      ++  D +         I  
Sbjct: 188 IRKLSNKYMNNPKQVTISKGEVTA-----PSINQVYFKVLEKNKLDSL-CRVIDSETIDL 241

Query: 586 -LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TK+   +LTE L  R      +H ++   +R  +++  R    + L+  ++   
Sbjct: 242 GIIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKFRDSSIEFLIATDVAAR 301

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           G+D+     V   D       +   S +  IGR  R     V +   T  + 
Sbjct: 302 GIDVENVSHVINYD-----IPQDPESYVHRIGRTGRAGREGVAVTLVTPREM 348


>gi|197287125|ref|YP_002152997.1| ATP-dependent RNA helicase RhlB [Proteus mirabilis HI4320]
 gi|227357184|ref|ZP_03841553.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|226739541|sp|B4F1V3|RHLB_PROMH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|194684612|emb|CAR46501.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320]
 gi|227162716|gb|EEI47683.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 432

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 63/341 (18%), Positives = 109/341 (31%), Gaps = 65/341 (19%)

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKE---ELKMRLIELEKEGRLLEAQRLE 423
           TG+ +  + +   Y  +H        N     I     EL +++          +AQ L 
Sbjct: 57  TGKTLAFLTSTFHYLLTHPAKEGHEKNQPRALIMAPTRELAVQI--------YTDAQPLA 108

Query: 424 QRITYDLEMLETTGSCQSIENYSRYLTGRNPGE-----PPPTLFEYIPEDSLLFVDESHV 478
           Q            G     + Y   L   N G          L +Y        V + H+
Sbjct: 109 QSTG------VKMGLAYGGDGYDEQLKVLNNGVDIVIGTTGRLIDY--------VKQGHI 154

Query: 479 TIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLRPTTIVVS 529
            +  I  +   +  R   L   GF         R+P+  +   + F      R   +   
Sbjct: 155 NLNAIQVVVLDEADRMYDL---GFIKDIRWLFRRMPNAAERMNMLFSATLSYRVRELAFE 211

Query: 530 ATPGSWELE-----QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
                  +E     +    I E++  P+       ++R  +T +E+         +   R
Sbjct: 212 QMNNPEYVEVEPEQKTGFSIKEELFYPSNEE----KMRLLQTLIEE---------EWPER 258

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TK   +D+  +L     RV  +  +V   +R+ I+ D   G  D+LV  ++   
Sbjct: 259 CIIFANTKHRCDDIWAHLAADGHRVGLLTGDVPQKKRLRILEDFTQGNIDILVATDVAAR 318

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           GL IP    V   D             +  IGR  R   S 
Sbjct: 319 GLHIPSVTHVFNYD-----LPDDCEDYVHRIGRTGRAGKSG 354


>gi|167644899|ref|YP_001682562.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp.
           K31]
 gi|167347329|gb|ABZ70064.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
          Length = 479

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++   TKR A+ + +YL    I    +H +    +R   +   + G+   L+  ++ 
Sbjct: 246 ERSIVFTRTKRGADRVAKYLVASGIEAAAIHGDKTQGQRERALAAFKAGQVKALIATDIA 305

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAI 701
             G+D+ +   V   +           S +  IGR AR     + I +     +++   I
Sbjct: 306 ARGIDVNDVSHVFNYE-----LPNVPESYVHRIGRTARKGKEGIAISFCADDERNLLKDI 360

Query: 702 DETTRR 707
            + TR+
Sbjct: 361 QKATRQ 366


>gi|146338133|ref|YP_001203181.1| ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278]
 gi|146190939|emb|CAL74944.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
           (rhlE gene) [Bradyrhizobium sp. ORS278]
          Length = 473

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 62/184 (33%), Gaps = 14/184 (7%)

Query: 521 LRPTTIVVSAT-PGSW-ELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           ++  T+  SAT P    EL         ++ + P       +  R    QV+       L
Sbjct: 179 IKRQTLFFSATMPKDIAELADSMLRDPARVAVTPVSSTVERIAQR--VIQVDHSAKPSLL 236

Query: 578 AA----QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           A     +   R L+   TK  A+ + + L +  I  + +H       R   +   R G+ 
Sbjct: 237 AQLLKNEPVNRALVFTRTKHGADKVVKGLEKAGIPAQAIHGNKSQNHRERTLAAFRTGEI 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
             LV  ++   G+D+     V   D           + +  IGR AR     V +     
Sbjct: 297 RTLVATDIAARGIDVDGVSHVVNFD-----LPNVPETYVHRIGRTARAGADGVAISLVAG 351

Query: 694 TKSI 697
              +
Sbjct: 352 ADEM 355


>gi|15675334|ref|NP_269508.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|19746376|ref|NP_607512.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232]
 gi|71903810|ref|YP_280613.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71910967|ref|YP_282517.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94988830|ref|YP_596931.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94994657|ref|YP_602755.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
 gi|13622515|gb|AAK34229.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|19748574|gb|AAL98011.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS8232]
 gi|71802905|gb|AAX72258.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71853749|gb|AAZ51772.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94542338|gb|ABF32387.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94548165|gb|ABF38211.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
          Length = 539

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRP-----TGLVDPPVEIRSARTQVEDVYDEINL 577
            T++ SAT P   +    + +   + ++      T +      +R    +  D    +  
Sbjct: 176 QTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLMD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              Q    ++   TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV
Sbjct: 236 -VNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +  
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIT-----QDPESYVHRIGRTGRAGKSGESITFVSPNEMG 349

Query: 698 QLAIDETTRRREKQL----------EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
            L++ E     +KQ+              K  +  + ++    +       +      + 
Sbjct: 350 YLSMIENL--TKKQMKPLRPATAEEAFQAKKKVALKKIERDFADETIRSNFDKFKGDAVQ 407

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQ 770
           + A+    + ++   ++ SL  Q
Sbjct: 408 LAAEF---TPEELALYILSLTVQ 427


>gi|21910615|ref|NP_664883.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28895696|ref|NP_802046.1| ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
 gi|21904817|gb|AAM79686.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28810945|dbj|BAC63879.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
          Length = 539

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRP-----TGLVDPPVEIRSARTQVEDVYDEINL 577
            T++ SAT P   +    + +   + ++      T +      +R    +  D    +  
Sbjct: 176 QTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLMD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              Q    ++   TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV
Sbjct: 236 -VNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +  
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIT-----QDPESYVHRIGRTGRAGKSGESITFVSPNEMG 349

Query: 698 QLAIDETTRRREKQL----------EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
            L++ E     +KQ+              K  +  + ++    +       +      + 
Sbjct: 350 YLSMIENL--TKKQMKPLRPATAEEAFQAKKKVALKKIERDFADETIRSNFDKFKGDAVQ 407

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQ 770
           + A+    + ++   ++ SL  Q
Sbjct: 408 LAAEF---TPEELALYILSLTVQ 427


>gi|330961645|gb|EGH61905.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 442

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 12/156 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D++  +    + G  +L+   T+   + L + L    +    +H +     R   +   +
Sbjct: 233 DLFIHLMKKHRWGQ-VLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFK 291

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVIL 688
             +  +LV  ++   GLDI +   V  LD             I  IGR  R     + I 
Sbjct: 292 SNEVKILVATDVAARGLDIDDLPTVVNLDLPIV-----AEDYIHRIGRTGRAGLTGEAIS 346

Query: 689 YADTITKSIQLAID----ETTRRREKQLEHNKKHNI 720
                   +  AI+    +T  RRE+Q +   +H +
Sbjct: 347 LVCADEVELLSAIEVLTRQTLERREEQ-DFEPEHRV 381


>gi|325189223|emb|CCA23746.1| DEAD box helicase putative [Albugo laibachii Nc14]
          Length = 809

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 5/121 (4%)

Query: 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
           E  S+  QV             G ++++ V  K+  + L +YL +   R   +H      
Sbjct: 628 ETLSSSGQVRISR---KEKVVDGQKVMVFVNIKKECDVLGKYLAQEGFRTTILHGGKSQE 684

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R E +R  R G  DVLV  ++   GLDIP+   V   D   +  + +    I   GRA 
Sbjct: 685 QREESLRGFREGFCDVLVATDVAGRGLDIPDVTHVVNYDLPSK--IENYCHRIGRTGRAG 742

Query: 680 R 680
           +
Sbjct: 743 K 743


>gi|296392647|ref|YP_003657531.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296179794|gb|ADG96700.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
           44985]
          Length = 495

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +++      A  +G   ++   TKR A  L + L ER      +H ++    R E +   
Sbjct: 244 DELVSRFLQAEGRG-TTMIFTRTKRSAGKLADELVERGFSAGSLHGDMSQGAREEALSGF 302

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R GK ++LV  ++   G+DI     V             +   +  IGR  R   + + +
Sbjct: 303 RKGKIEILVCTDVAARGIDIDGITHVINY-----TCPEDEKVYVHRIGRTGRAGRTGIAI 357


>gi|227538144|ref|ZP_03968193.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241987|gb|EEI92002.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 435

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 75/201 (37%), Gaps = 29/201 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            +  T++ SAT    E+++    I+E+           VE+    T  E +   +   ++
Sbjct: 195 KKRQTLLFSAT-MPAEIQKLASHILEEP--------SKVEVTPESTTAEKIQQSVYFVSK 245

Query: 581 QGLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
              R               L+   TK  A+ + + L ++ I+   +H       R   + 
Sbjct: 246 SDKRHLLTHLLKSENIEHTLVFSRTKHGADRIAKDLAKQGIQAAAIHGNKSQSARQNALS 305

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSK 685
           + +  K  VLV  ++   G+DI +   V   D           S +  IGR  R   + K
Sbjct: 306 NFKDRKLRVLVATDIAARGIDIDDLSYVINFD-----LPNIPESYVHRIGRTGRAGKDGK 360

Query: 686 VILYADTITKSIQLAIDETTR 706
            I + D    +  L I+++ R
Sbjct: 361 AISFCDDEEYAYLLDIEKSIR 381


>gi|84393955|ref|ZP_00992695.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus 12B01]
 gi|84375399|gb|EAP92306.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus 12B01]
          Length = 421

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 75/212 (35%), Gaps = 21/212 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR--TQVEDVYDEINLA- 578
           R  T++ SAT    E +  +G   E +++    +D    +R  +  TQ     D      
Sbjct: 180 RKQTLLFSAT---LEGKGIEGFT-EDLLKNPAEIDAKSSLRERKKITQWYHRADSAKHKL 235

Query: 579 -------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                   +Q  R ++ + T+    +L   L    I   ++  E+    R   I   R G
Sbjct: 236 NILKHIITEQAERSIIFLKTRDRLGELRAQLESAQIPCVWIQGEMPQDRRNNAISRFRDG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
             +VL+  ++   G+D+P+   V   D  +     +    +  IGR AR       +   
Sbjct: 296 SINVLLATDVAARGIDLPDVSHVINYDMPR-----TADVYLHRIGRTARAGKKGNAVSII 350

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
                +   I+   R  E  ++      + P 
Sbjct: 351 EAHDQLM--IERVARYTEDAIKERFIEGMRPT 380


>gi|308188835|ref|YP_003932966.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
 gi|308059345|gb|ADO11517.1| putative ATP-dependent RNA helicase [Pantoea vagans C9-1]
          Length = 430

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 80/238 (33%), Gaps = 41/238 (17%)

Query: 461 LFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNR 511
           L +Y          ++HV +  I  M   +  R   L   GF         R+P      
Sbjct: 145 LIDY--------AKQNHVNLGAIQVMVLDEADRMFDL---GFIKDIRWLFRRMPPATQRL 193

Query: 512 PLRFEEWNCLRPTTI----VVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ 567
            + F      R   +    + SA     E EQ  G    +I           ++R  +T 
Sbjct: 194 SMLFSATLSYRVRELAFEHMNSAEYVEVEPEQKTG---HRIQEELFYPSNEEKMRLLQTL 250

Query: 568 VEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
           +E+         +   R ++   TK   ED+  +L     RV  +  +V   +R+ I+ D
Sbjct: 251 LEE---------EWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDD 301

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              G  D+LV  ++   GL IP    V   D             +  IGR  R   S 
Sbjct: 302 FTKGDVDILVATDVAARGLHIPAVTHVFNYD-----LPDDCEDYVHRIGRTGRAGASG 354


>gi|326791684|ref|YP_004309505.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326542448|gb|ADZ84307.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 371

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 61/178 (34%), Gaps = 16/178 (8%)

Query: 521 LRPTTIVVSAT---PGS-----WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVY 572
            +  T+  SAT   P       +        I ++ I    +    VE      Q   + 
Sbjct: 173 KKRQTLCFSATMDAPVKKLAYRYTSSPTTVTIAKKKITIEAIHQEIVETTDRHKQAALLQ 232

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
               L+       ++   TKR  E L E + +++     +HS++   +R  I++  + G 
Sbjct: 233 ---VLSEDNPYMAIIFCRTKRRVEVLYEAMKDKDYNCVRLHSDILQSKRERIMKSFKKGD 289

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              L+  ++   GLDI     +   D        +  + I  IGR  R  N       
Sbjct: 290 IQYLIATDVAARGLDISGVTHIYNYDV-----PETPEAYIHRIGRTGRAGNDGYTCMF 342


>gi|294789414|ref|ZP_06754651.1| 3-hydroxyisobutyrate dehydrogenase family protein [Simonsiella
           muelleri ATCC 29453]
 gi|294482627|gb|EFG30317.1| 3-hydroxyisobutyrate dehydrogenase family protein [Simonsiella
           muelleri ATCC 29453]
          Length = 471

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 11/186 (5%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT  P   +L Q      E + +      +  VE            + +     
Sbjct: 207 QTLLFSATFAPAIRKLAQDFMNSPETVEVAAQNATNANVEQHVIAVDAYRKRELLERLIV 266

Query: 581 QGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                ++++   TK+ A+ +   L  R +    +H +     R++++   + G+  VLV 
Sbjct: 267 DLQMPQVIVFCKTKQSADQVARDLVRRGLSANAIHGDKSQQTRLDVLSQFKSGELRVLVA 326

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   GLDI E   V   +             +  IGR  R     V I   D   + +
Sbjct: 327 TDVAARGLDIAELPFVINYE-----LPTQAEDYVHRIGRTGRAGADGVAISMMDDNEQKM 381

Query: 698 QLAIDE 703
             +I+E
Sbjct: 382 YFSINE 387


>gi|269103446|ref|ZP_06156143.1| ATP-dependent RNA helicase SrmB [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163344|gb|EEZ41840.1| ATP-dependent RNA helicase SrmB [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 374

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 18/190 (9%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
           R  +++ SAT  G    E  Q I+ E +             R    QV    D +     
Sbjct: 115 RQQSLLFSATLEGKGVREFSQHILNEPLEVNAEPSRRE---RKKIHQVYHRCDNMEHKLA 171

Query: 579 ------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      R ++ V T+    +L   L  R I+  ++  E+    R   IR  R G 
Sbjct: 172 ILEHLLRNDAERTIIFVKTRERLAELRGQLETRQIKCCWIQGEMAQAARSNTIRRFREGV 231

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            +V++  ++   G+D+P+   V   D  +     +    +  IGR AR       I   +
Sbjct: 232 INVMIATDVAARGIDLPDVSHVINFDMPR-----TADVYLHRIGRTARAGKKGSAISLVE 286

Query: 692 TITKSIQLAI 701
              +++   +
Sbjct: 287 AHDQAMMERV 296


>gi|226510222|ref|NP_001147777.1| nucleolar RNA helicase 2 [Zea mays]
 gi|195613718|gb|ACG28689.1| nucleolar RNA helicase 2 [Zea mays]
          Length = 613

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR A+ L  Y+  R+ + + +H ++   +R   +   R G+F++LV  ++  
Sbjct: 341 KCIVFTQTKREADRLA-YVMGRSYQCQALHGDISQNQRERTLSGFRDGRFNILVATDVAA 399

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLDIP   LV            +    +   GR AR       +   T  ++  + + E
Sbjct: 400 RGLDIPNVDLVV-----HYEIPNTSELFVHRSGRTARAGKKGSAILIYTYEQTRAVRVIE 454


>gi|156043018|ref|XP_001588066.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|154695693|gb|EDN95431.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 535

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 76/240 (31%), Gaps = 35/240 (14%)

Query: 467 EDSLLFVDESHVTIP------QISGMYRGDFHRKATLA--EYGFRLPSCMDNRPLRFEEW 518
           +D +   +  H+ +        ++G    D          E    L         +  ++
Sbjct: 157 DDIMRLAEPVHIIVGTPGRILDLAGKNVADLSECNMFIMDEADKLLSPEFTIVIEQLLQF 216

Query: 519 NCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR 565
           +      ++ SAT                +E+     + +  I +    V+   ++    
Sbjct: 217 HPKDRQIMLFSATFPMTVKDFSDKNMADPYEINLMDELTLRGITQFYAFVEEKEKVH--- 273

Query: 566 TQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
                  + +    Q    I +   +    E L + + E      Y H+ +    R  + 
Sbjct: 274 -----CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMIQANRNRVF 327

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +  
Sbjct: 328 HDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGHLG 382


>gi|152991450|ref|YP_001357172.1| DEAD-box ATP dependent DNA helicase [Nitratiruptor sp. SB155-2]
 gi|151423311|dbj|BAF70815.1| ATP-dependent RNA helicase, DEAD-box family [Nitratiruptor sp.
           SB155-2]
          Length = 471

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 106/279 (37%), Gaps = 30/279 (10%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-DVYDEINLAA- 579
            T++ SAT      EL Q Q +   + I  T      V I+     V+    DE  +   
Sbjct: 173 QTLLFSATMPQAIKELAQ-QILHSPEFISITKKEVTNVNIKQFYYVVDEHERDEALIRLL 231

Query: 580 --QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             +   + ++    K   + L ++L  +    + +H +++  +R E I+  + G  ++L+
Sbjct: 232 DYKNPTKSIIFCRMKIEVDRLAQFLEAQGYSAKGLHGDMQQRQREETIKAFKRGNIEILI 291

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-- 695
             ++   GLDI +   V       +       S +  IGR  R     + +   T  +  
Sbjct: 292 ATDVAARGLDISDVSHVFNYHIPFD-----PESYVHRIGRTGRAGKEGIAISLVTPHEFK 346

Query: 696 ---SIQLAIDETTRRREK---QLEHNKKHN-----INPQSVKEKIMEVID----PILLED 740
               IQ  +  +   +E        N+K       I  Q V ++ +E+++     I +  
Sbjct: 347 QLLRIQKEVGSSLINKEIPTSAEVKNEKQKSMLDMILSQEVSKEAIELVELLESQIDIST 406

Query: 741 AATTNISIDAQQLSLSKKK-GKAHLKSLRKQMHLAADNL 778
           AA    S+  +  ++S  +     LK + K +  A   L
Sbjct: 407 AALKLASMVIKNDTVSGNERIGKSLKEIEKMLEQAKREL 445


>gi|30582090|gb|AAF21371.2|AF155140_1 gonadotropin-regulated testicular RNA helicase [Homo sapiens]
 gi|52626565|gb|AAU84667.1| gonadotropin-regulated testicular RNA helicase-GRTH/DDX25 [Homo
           sapiens]
          Length = 483

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 71/208 (34%), Gaps = 25/208 (12%)

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GF   S    R L  E         ++ SAT      E       E+II    ++    E
Sbjct: 257 GFSDHSIRIQRALPSEC------QMLLFSAT-----FEDSVWHFAERIIPDPNVIKLRKE 305

Query: 561 IRSARTQVEDVYDEINLAAQQGL------------RILLTVLTKRMAEDLTEYLYERNIR 608
                  +   Y        +              + ++   T+R A+ LT  + +   +
Sbjct: 306 -ELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQ 364

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD-KEGFLRS 667
           V  +  E+   +R  I +  R GK  VL+  N+   G+D+ +  +V   D   K+G    
Sbjct: 365 VSLLSGELTVEQRASITQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPD 424

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITK 695
             + +  IGR  R     +      + +
Sbjct: 425 YETYLHRIGRTGRFGKKGLAFNMIEVDE 452


>gi|68072041|ref|XP_677934.1| RNA helicase [Plasmodium berghei strain ANKA]
 gi|56498231|emb|CAH99198.1| RNA helicase, putative [Plasmodium berghei]
          Length = 855

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 10/182 (5%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             ++  TI+ SAT         +  +      ++   G  +  ++     ++ E+    +
Sbjct: 484 EIVKRQTIMFSATFRKEIQVLAKDYLCNYTFLLVGKVGSTNEYIKQNLVYSEEENKCSFL 543

Query: 576 NLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                +      ++ V TKR A+ +  +L  + +    +H +    ER   +   + G  
Sbjct: 544 LKLLSENSNGLTIIFVETKRKADIIERFLNNQKLNAVCIHGDKSQDERERALELFKRGVK 603

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           ++LV  ++   GLDI     V   D        +    I  IGR  R  N  +       
Sbjct: 604 NILVATDVAARGLDISNIKHVINFD-----LPSNIDDYIHRIGRTGRAGNIGIATSFVND 658

Query: 694 TK 695
             
Sbjct: 659 DN 660


>gi|70945373|ref|XP_742513.1| RNA helicase [Plasmodium chabaudi chabaudi]
 gi|56521539|emb|CAH76133.1| RNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 649

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 10/182 (5%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             ++  TI+ SAT         +  +      ++   G  +  ++     ++ E+    +
Sbjct: 445 EIVKRQTIMFSATFRKEIQVLAKDYLCNYTFLLVGKVGSTNEYIKQNLVYSEEENKCSFL 504

Query: 576 NLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                +      ++ V TKR A+ +  +L  + +    +H +    ER   +   + G  
Sbjct: 505 LKLLSENSNGLTIIFVETKRKADIIERFLNNQKLNAVCIHGDKSQDERERALELFKRGVK 564

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           ++LV  ++   GLDI     V   D        +    I  IGR  R  N  +       
Sbjct: 565 NILVATDVAARGLDISNIKHVINFD-----LPSNIDDYIHRIGRTGRAGNIGIATSFVND 619

Query: 694 TK 695
             
Sbjct: 620 DN 621


>gi|83286284|ref|XP_730094.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23489719|gb|EAA21659.1| DEAD box polypeptide, Y chromosome-related [Plasmodium yoelii
           yoelii]
          Length = 908

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 10/182 (5%)

Query: 519 NCLRPTTIVVSATPGSWELEQCQGIIVE---QIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
             ++  TI+ SAT         +  +      ++   G  +  ++     ++ E+    +
Sbjct: 537 EIVKRQTIMFSATFRKEIQVLAKDYLCNYTFLLVGKVGSTNEYIKQNLVYSEEENKCSFL 596

Query: 576 NLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                +      ++ V TKR A+ +  +L  + +    +H +    ER   +   + G  
Sbjct: 597 LKLLSENSNGLTIIFVETKRKADIIERFLNNQKLNAVCIHGDKSQDERERALELFKRGVK 656

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
           ++LV  ++   GLDI     V   D        +    I  IGR  R  N  +       
Sbjct: 657 NILVATDVAARGLDISNIKHVINFD-----LPSNIDDYIHRIGRTGRAGNIGIATSFVND 711

Query: 694 TK 695
             
Sbjct: 712 DN 713


>gi|315635445|ref|ZP_07890711.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22]
 gi|315480203|gb|EFU70870.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22]
          Length = 516

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 66/183 (36%), Gaps = 31/183 (16%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TK+  + L+ +L  +    + +H +++  +R E IR  +  K ++L+  ++  
Sbjct: 238 KSIIFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILIATDVAA 297

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            GLD+ +   V               S +  IGR  R                + ++I  
Sbjct: 298 RGLDVNDVTHVFNYH-----LPFDSESYVHRIGRTGRAGKEG-----------MAISIVT 341

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
               R  Q             +++ I   ++  ++ +     +    +   L ++  +  
Sbjct: 342 PHEFRMLQ------------KIEKSIGTKLESKVVPNIG---LVKKKKFAELKQQVLEQE 386

Query: 764 LKS 766
           +K 
Sbjct: 387 IKD 389


>gi|269968866|ref|ZP_06182847.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio
           alginolyticus 40B]
 gi|269826516|gb|EEZ80869.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio
           alginolyticus 40B]
          Length = 421

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 83/264 (31%), Gaps = 32/264 (12%)

Query: 457 PPPTLFEYI-------PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
            P  L +++        +  +L +DE+   +            R         RLP    
Sbjct: 134 TPGRLLDHLFNGNVNISKTGMLVLDEADRMLDMGFWPDLQRIFR---------RLP-AEK 183

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
              L    +      TI         E+E        + +           +     + +
Sbjct: 184 QILLFSATFEKRIK-TIAYKLMESPVEVEVSPANTTAETVTQM--------VYPVDKKRK 234

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                  + ++   ++L+   TK+ +++L + L    I+   ++ +     R   + + +
Sbjct: 235 RELLAYLIGSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFK 294

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            GK   L+  ++   GLDI E   V   D   +         +  IGR  R   S   + 
Sbjct: 295 QGKVRALIATDVAARGLDIQELEQVVNFDMPFK-----AEDYVHRIGRTGRAGKSGLAVS 349

Query: 689 YADTITKSIQLAIDETTRRREKQL 712
                 + +  AI+    +R  Q 
Sbjct: 350 LMSRDEEYLLQAIENLLDQRLPQE 373


>gi|255541534|ref|XP_002511831.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223549011|gb|EEF50500.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 507

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 12/137 (8%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  D R G    LV  +L   G
Sbjct: 374 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG 433

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +DI    +V   D     F ++  + +  +GR+ R  +  + +   T      L      
Sbjct: 434 IDIQAVNVVINFD-----FPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNL------ 482

Query: 706 RRREKQLEHNKKHNINP 722
             R +Q    +   I P
Sbjct: 483 -YRIEQELGTEIKQIPP 498


>gi|207080270|ref|NP_001128971.1| probable ATP-dependent RNA helicase DDX6 [Pongo abelii]
 gi|75062071|sp|Q5RFQ5|DDX6_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX6; AltName:
           Full=DEAD box protein 6
 gi|55725069|emb|CAH89402.1| hypothetical protein [Pongo abelii]
          Length = 483

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 79/235 (33%), Gaps = 26/235 (11%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVS 529
           ++ +DE+   + Q       D             L    + + L +     L     + S
Sbjct: 242 MIVLDEADKLLSQDFVQIMEDI-----------ILTLPKNRQILLYSATFPLSVQKFMNS 290

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
                +E+   + + ++ + +    V    ++           + +    Q    I +  
Sbjct: 291 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH--------CLNTLFSRLQINQSI-IFC 341

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            + +  E L + + +      Y+H++++   R  +  D R G    LV  +L   G+DI 
Sbjct: 342 NSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 401

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ-LAIDE 703
              +V   D  K        + +  IG + R  +  + +   T        +I+E
Sbjct: 402 AVNVVINFDFPKL-----AETYLHRIGGSGRFGHLGLAINLITYDDRFNLKSIEE 451


>gi|88854845|ref|ZP_01129511.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
 gi|88816006|gb|EAR25862.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
          Length = 757

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 7/141 (4%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D    I   +    + L+   T+  AE++ E+L         +H ++    R   ++ L 
Sbjct: 604 DKRAIIKQLSAGTGKTLVFTRTRAFAEEMAEFLSMGGTPATSLHGDLNQSRRTRNLQMLT 663

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            GK +VLV  ++   G+ + +  LV   DA +E       + +   GR  R   +  ++ 
Sbjct: 664 SGKVNVLVATDVAARGIHVDDISLVIQADAPEE-----YKTYLHRAGRTGRAGKAGTVVT 718

Query: 690 ADTITKSIQLAIDETTRRREK 710
              I ++ +  +DE   R E 
Sbjct: 719 L--IPRNRRRKMDELLGRAEI 737


>gi|295104399|emb|CBL01943.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           SL3/3]
          Length = 395

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 15/166 (9%)

Query: 546 EQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAAQQGL-RILLTVLTKRMAEDLTE 600
           E  ++P     P +       S R ++ D+   I     +G  R+++   TK     L  
Sbjct: 202 EITVQPREESQPKITQYMLETSGRNKLSDLAQII---IGEGYKRVMVFCDTKFNTATLAN 258

Query: 601 YLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDAD 660
            L      V  +H ++   ER +I++  R GK  +LV  ++   G+D+ +   V   D  
Sbjct: 259 QLARLGFSVDCLHGDLSQKERNQIMQAFRDGKLAILVATDVAARGIDVSDVDAVINYDVP 318

Query: 661 KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
            E            IGR  R     V        +  +  + E  R
Sbjct: 319 SEN-----EHYTHRIGRTGRAKKEGVSYLFYVPEE--KKRVQELLR 357


>gi|289640625|ref|ZP_06472797.1| helicase domain protein [Frankia symbiont of Datisca glomerata]
 gi|289509514|gb|EFD30441.1| helicase domain protein [Frankia symbiont of Datisca glomerata]
          Length = 579

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 65/181 (35%), Gaps = 13/181 (7%)

Query: 522 RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPT---GLVDPPVEIRSARTQVEDVYDEIN 576
              T++ SAT  P    L +        +       G   P +     R    D  + + 
Sbjct: 101 IRQTLLFSATMPPPVISLARRFMRRPVHVTAEHPDEGRTVPDISQHVFRAHALDKIEVLA 160

Query: 577 LAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              Q   R   ++ V T+R A+ + + L  R      +H ++   +R + +R  R GK D
Sbjct: 161 RVLQAEGRGLAIVFVRTRRTADRVADDLTGRGFAAAAVHGDIGQGQREQALRAFRSGKID 220

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           VLV  ++   G+DI     V             +   +  +GR  R   S V + + D  
Sbjct: 221 VLVATDVAARGIDIGGVTHVVNYQC-----PEDENVYLHRVGRTGRAGGSGVAVTFVDWD 275

Query: 694 T 694
            
Sbjct: 276 D 276


>gi|288924465|ref|ZP_06418438.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
 gi|288344188|gb|EFC78744.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
          Length = 459

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 79/211 (37%), Gaps = 9/211 (4%)

Query: 522 RPTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
                + SAT   P      Q     VE  +R   +       R          D +   
Sbjct: 192 AKQVALFSATMPAPIRRISRQYLRDPVEITVRARTVTAANTRQRFLTVAGPRKMDALTRV 251

Query: 579 AQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
            +      +++ V TK   ED+ E L  R      ++ ++   +R ++I  LR G  D+L
Sbjct: 252 LEVEPFEAMIIFVRTKSATEDVAERLRSRGFATEAINGDLGQPQREKLIAQLRDGALDLL 311

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   GLD+     V   D   +    S    I   GRA R+     +L      K 
Sbjct: 312 VATDVAARGLDVERVTHVVNYDIPTD--PESYVHRIGRTGRAGRSGE--ALLLVTPREKG 367

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           +  AI++ TR+   ++E     ++N + V +
Sbjct: 368 LLAAIEKATRQPLAEMELPTAEDVNARRVAK 398


>gi|290987403|ref|XP_002676412.1| predicted protein [Naegleria gruberi]
 gi|284090014|gb|EFC43668.1| predicted protein [Naegleria gruberi]
          Length = 407

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   +++  E L E L +++  V  MH E+   +R  I+ + R     VL+  +LL 
Sbjct: 275 QCVIFCNSRKKVEQLAEQLNKKDFTVSCMHGEMDPKDRELIMHEFRTSASRVLITTDLLA 334

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
            G+D+    LV   D       R K + +  IGR+ R     V I +           I+
Sbjct: 335 RGIDVHHVSLVINFD-----LPRHKENYLHRIGRSGRYGRKGVAINFVTKDDVRSLREIE 389


>gi|222110266|ref|YP_002552530.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221729710|gb|ACM32530.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
          Length = 484

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 75/195 (38%), Gaps = 12/195 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA- 579
           T++ SAT            + +    ++ RP       VE R      +D    I     
Sbjct: 187 TLLFSATFSPEIKRLAGSYLQDPITIEVARPNETAST-VEQRFFAVDGDDKRRAIRHVLN 245

Query: 580 QQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++GL+   + V +K     L   L    ++   +H +    ER++ +   + G+ D+LV 
Sbjct: 246 ERGLKQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALDAFKSGEVDLLVC 305

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI +   V   D        +    +  IGR  R   S + +     + +  
Sbjct: 306 TDVAARGLDIKDVPAVFNYDVPF-----NAEDYVHRIGRTGRAGASGLAVTLAASSDTRL 360

Query: 699 LAIDETTRRREKQLE 713
           +A  E   +++ +LE
Sbjct: 361 VADIEKLIKKKIELE 375


>gi|187929488|ref|YP_001899975.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12J]
 gi|187726378|gb|ACD27543.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
          Length = 493

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 76/238 (31%), Gaps = 31/238 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         V +  V + Q+  +   +  R     + GF LP       L   
Sbjct: 146 TPGRLLD--------HVQQRSVNLSQVRMLVLDEADRM---LDMGF-LPDLQRIINLLPA 193

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVED----- 570
                   T++ SAT            +   Q I           +R     V D     
Sbjct: 194 H-----RQTLLFSATFSPEIKRLAASYLRHPQTIEVARSNATAENVRQVIYTVPDNHKQA 248

Query: 571 -VYDEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
            +   +   A+QGL  + ++   +K     L   L    I    +H +    ER++ +  
Sbjct: 249 ALVHLLRQRAEQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEA 308

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            + G  DVLV  ++   GLDI +   V   D        +    +  IGR  R   S 
Sbjct: 309 FKQGTVDVLVATDVAARGLDISQMPCVINFD-----LPFNAEDYVHRIGRTGRAGASG 361


>gi|163732038|ref|ZP_02139484.1| ATP-dependent RNA helicase, putative [Roseobacter litoralis Och
           149]
 gi|161394336|gb|EDQ18659.1| ATP-dependent RNA helicase, putative [Roseobacter litoralis Och
           149]
          Length = 504

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 82/267 (30%), Gaps = 39/267 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++     LL       T  QI  +   D      + + GF  P       L   
Sbjct: 150 TPGRLLDHFERGKLLL------TGVQIMVVDEADR-----MLDMGFI-PDIERIFSLTP- 196

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR-------------PTGLVDPPVEIRS 563
                   T+  SAT    E+E+     +    R               G++      + 
Sbjct: 197 ----FTRQTLFFSATMAP-EIERITNTFLSAPERVEVARQATASETIEQGVLKFKASRKD 251

Query: 564 ART--QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
                + + +   I+   ++    ++    K   + + + L + N     +H ++   +R
Sbjct: 252 REGTEKRKLLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLKKYNYDAAPIHGDLDQSQR 311

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
              +   R G    L+  ++   GLD+P    V   D             +  IGR  R 
Sbjct: 312 TRTLDGFRDGSLKFLIASDVAARGLDVPAVSHVFNFDVPG-----HAEDYVHRIGRTGRA 366

Query: 682 V-NSKVILYADTITKSIQLAIDETTRR 707
             + K I+      +     I+   +R
Sbjct: 367 GRDGKAIMICVPRDERNLEDIERLVQR 393


>gi|154313296|ref|XP_001555974.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
 gi|160380642|sp|A6RY31|DHH1_BOTFB RecName: Full=ATP-dependent RNA helicase dhh1
 gi|150849414|gb|EDN24607.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
          Length = 538

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 27/182 (14%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           +++      ++ SAT                +E+     + +  I +    V+   ++  
Sbjct: 215 QFHPKDRQIMLFSATFPMTVKDFSDKNMADPYEINLMDELTLRGITQFYAFVEEKEKVH- 273

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y H+ +    R  
Sbjct: 274 -------CLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCFYSHARMIQANRNR 325

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 326 VFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD-----FPKNAETYLHRIGRSGRFGH 380

Query: 684 SK 685
             
Sbjct: 381 LG 382


>gi|89632638|gb|ABD77551.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Ictalurus punctatus]
          Length = 289

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 86/221 (38%), Gaps = 15/221 (6%)

Query: 559 VEIRSA-RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617
           V IR A     E +   +     Q   ++L   TK+ A  +   L    ++V  +H  + 
Sbjct: 5   VRIRPAREGDREAIVAALLTRTFQDH-VMLFTQTKKQAHRMHILLGLMGLKVGELHGNLS 63

Query: 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGR 677
             +R+E +R  +  + D+LV  ++   GLDI     V            +    +  +GR
Sbjct: 64  QTQRLESLRRFKDEQIDILVATDVAARGLDIDGVKTVINF-----TMPNTPKHYVHRVGR 118

Query: 678 AARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPIL 737
            AR    KV      + +S +  + E  ++ +       K  I PQ V  K  ++I+ + 
Sbjct: 119 TARAG--KVGRSVSLVGESERKMLKEIVKKAKA----PVKARIIPQEVILKFRDLIEKLE 172

Query: 738 LEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQM--HLAAD 776
            +  A   +  + +++  S+ +     + L ++      A 
Sbjct: 173 KDVYAVLRLEKEEKEMVHSEAQINVAQRRLTQKSDEKQPAR 213


>gi|16272370|ref|NP_438583.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae Rd KW20]
 gi|260580515|ref|ZP_05848343.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae RdAW]
 gi|1174440|sp|P44701|SRMB_HAEIN RecName: Full=ATP-dependent RNA helicase srmB homolog
 gi|1573394|gb|AAC22078.1| ATP-dependent RNA helicase (srmB) [Haemophilus influenzae Rd KW20]
 gi|260092857|gb|EEW76792.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae RdAW]
          Length = 439

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 88/260 (33%), Gaps = 34/260 (13%)

Query: 470 LLFVDESHVTIPQISGMYRG-----DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +L  DE+   +    G            RK TL      L S      L  +    L   
Sbjct: 153 MLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL------LFSATLEGELLVDFAERLLND 206

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + V A P   E ++                       S   +++ +   I    ++  R
Sbjct: 207 PVKVDAEPSRRERKKINQWYYHAD--------------SNEHKIKLLARFIE--TEEVTR 250

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ +  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++   
Sbjct: 251 GIVFIRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+DI +   V   D        S  + +  IGR AR       +            + + 
Sbjct: 311 GIDIDDVSHVMNFD-----LPYSADTYLHRIGRTARAGKKGTAVSFVEAHD--YKLLGKI 363

Query: 705 TRRREKQLEHNKKHNINPQS 724
            R  E+ L+      + P++
Sbjct: 364 KRYTEEILKARILAGLEPRT 383


>gi|327264401|ref|XP_003217002.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like [Anolis
           carolinensis]
          Length = 820

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 591 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 650

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 651 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 708

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 709 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 763

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 764 AISFVTKEDSAVFYDLKQAILES 786


>gi|310790963|gb|EFQ26496.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 1112

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 67/189 (35%), Gaps = 18/189 (9%)

Query: 512 PLRFEEWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIRPT--------GLVDPPVEI 561
           P   + +  +RP   TI+ SAT     ++     +++  +  T          +   VEI
Sbjct: 658 PQVMKIFANIRPDRQTILFSAT-MPRIIDSLTKKVLKSPVEITVGGRSVVASDITQIVEI 716

Query: 562 RSARTQVEDVYDEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTL 619
                +   +   +     +    R L+ V  +  A+DL + L  +      +H     +
Sbjct: 717 VPEDQKFYHLLGLLGELYDKDEDARSLVFVERQEKADDLLKELMTKGYPCMSIHGGKDQV 776

Query: 620 ERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAA 679
           +R   I D + G   +L+  ++   GLD+ +  LV   D             +   GR  
Sbjct: 777 DRDSTISDFKKGIVPILIATSVAARGLDVKQLKLVVNYDC-----PSHSEDYVHRCGRTG 831

Query: 680 RNVNSKVIL 688
           R  N    +
Sbjct: 832 RAGNKGTAV 840


>gi|297741568|emb|CBI32700.3| unnamed protein product [Vitis vinifera]
          Length = 523

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 5/111 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ILL V +K  A++L   L   +IRV  +H+++   +R   + D R GK  VL+  +++  
Sbjct: 369 ILLFVQSKERAKELYTELAFDDIRVDVIHADLSQSQRENAVDDFRAGKTWVLIATDVIAR 428

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           G+D      V   D     F  S  + I  IGR+ R   +   +   T   
Sbjct: 429 GMDFKGINCVINYD-----FPDSPAAYIHRIGRSGRAGRTGEAITIYTEDD 474


>gi|251793160|ref|YP_003007888.1| cold-shock deAd box protein a [Aggregatibacter aphrophilus NJ8700]
 gi|247534555|gb|ACS97801.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Aggregatibacter aphrophilus NJ8700]
          Length = 600

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 86/269 (31%), Gaps = 53/269 (19%)

Query: 523 PTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV-DPPVEIRSARTQ-----VEDVYDEIN 576
             T + SAT            + E I R T      P E++   TQ     +      ++
Sbjct: 181 HQTALFSAT------------MPEPIRRITKRFMKDPQEVKIKATQQSAPDIAQSCWYVH 228

Query: 577 LAAQQG-----------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
              +                ++   TK    D+TE L +   R   ++ ++    R + +
Sbjct: 229 GLRKNDALLRFLEVEDFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTL 288

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             LR G  D++V  ++   G+DI    LV   D           S +  IGR  R   S 
Sbjct: 289 DRLRSGSLDIVVATDVAARGIDIERISLVVNYD-----IPLDAESYVHRIGRTGRAGRSG 343

Query: 686 VILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN 745
             L                   RE++L  N +H      +K+ I EV  P      A   
Sbjct: 344 RALLFVEP--------------RERRLLRNVEH-----LIKKNIEEVKLPNHEVLQACRR 384

Query: 746 ISIDAQQLSLSKKKGKAHLKSLRKQMHLA 774
                +  +  +       + L + M  A
Sbjct: 385 KKFKDKITTQLEHHDLELYRELLEDMFTA 413


>gi|194378646|dbj|BAG63488.1| unnamed protein product [Homo sapiens]
          Length = 453

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 243 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 296

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 297 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 356

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 357 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 415

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 416 MVDSKHSMNIL----NR---IQEHFNKK 436


>gi|91228876|ref|ZP_01262779.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
 gi|91187564|gb|EAS73893.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
          Length = 419

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 83/264 (31%), Gaps = 32/264 (12%)

Query: 457 PPPTLFEYI-------PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
            P  L +++        +  +L +DE+   +            R         RLP    
Sbjct: 130 TPGRLLDHLFNGNVNISKTGMLVLDEADRMLDMGFWPDLQRIFR---------RLP-AEK 179

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
              L    +      TI         E+E        + +           +     + +
Sbjct: 180 QILLFSATFEKRIK-TIAYKLMESPVEVEVSPANTTAETVTQM--------VYPVDKKRK 230

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                  + ++   ++L+   TK+ +++L + L    I+   ++ +     R   + + +
Sbjct: 231 RELLAYLIGSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFK 290

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            GK   L+  ++   GLDI E   V   D   +         +  IGR  R   S   + 
Sbjct: 291 QGKVRALIATDVAARGLDIQELEQVVNFDMPFK-----AEDYVHRIGRTGRAGKSGLAVS 345

Query: 689 YADTITKSIQLAIDETTRRREKQL 712
                 + +  AI+    +R  Q 
Sbjct: 346 LMSRDEEYLLQAIENLLDQRLPQE 369


>gi|326334210|ref|ZP_08200433.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
 gi|325948001|gb|EGD40118.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
          Length = 482

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 98/284 (34%), Gaps = 32/284 (11%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGL 554
            + + GF LP       L  E        T++ SAT PG+        +     IR    
Sbjct: 156 EMLDLGF-LPDVEKLVTLTPE-----TRQTLLFSATMPGAIVALARSYMRHPMNIRAESA 209

Query: 555 VDPPVEIRSARTQV---------EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
            +   E   A  Q           ++   +        ++++   TKR A+ + + L ER
Sbjct: 210 AER--ETVPATAQFVYQAHDLDKPEMIGRLLQCEDHD-KVVVFARTKRQAQRVADDLAER 266

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
                 +H +++   R  +++  R GK +VLV  ++   G+D+     V           
Sbjct: 267 GFPASPLHGDMQQAARERVMQKFRDGKVEVLVATDVAARGIDVTGVSHVVNYTT-----P 321

Query: 666 RSKTSLIQTIGRAARNVNSKV-ILYADTIT----KSIQLAIDETTRRREKQLEH-NKKHN 719
             + + +  IGR  R   S V +   D       K I  A+D      + Q  + + +H 
Sbjct: 322 DDEKTYVHRIGRTGRAGASGVAVTLVDWADLHKWKMINKALDLPFD--DPQETYSSSEHF 379

Query: 720 INPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
           ++   + +     I     E     +   D ++   + +     
Sbjct: 380 LHDMGIPKGTKGRIKKATPEKPKDKDAGTDGEKRERAPRNRNRQ 423


>gi|311244125|ref|XP_001925444.2| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Sus
           scrofa]
          Length = 643

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 12/179 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP----VEIRSARTQVEDVYDEINLAA 579
            T++ SAT         Q  + E +I   G +D      V+     T  ++    I    
Sbjct: 416 QTVMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTFI 475

Query: 580 QQ---GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +      ++++ V  K +A+ L+  L  R+I V  +H   +  +R   +++ + GK  +L
Sbjct: 476 ESMSPKDKVIIFVSRKAVADHLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKVRIL 535

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +  +L   GLD+ +   V   D     F R+    +  +GR  R   + V +   T + 
Sbjct: 536 IATDLASRGLDVHDVTHVYNYD-----FPRNIEEYVHRVGRTGRAGRTGVSITLITRSD 589


>gi|251780900|ref|ZP_04823820.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243085215|gb|EES51105.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 432

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 73/199 (36%), Gaps = 29/199 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
                ++ SAT    E++     I++  ++        VE+    + ++ +   +    +
Sbjct: 179 KVRQNLLFSAT-MPSEVKSLVNSILKDPVK--------VEVAPVSSTIDTITQGVYFVTK 229

Query: 581 QGLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           +  +              +L+   TK  A ++ + L +     + +H       R   + 
Sbjct: 230 KDKKSLLVHLLKDESIKSLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALS 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + + GK  VLV  ++   G+D+     V   D           + +  IGR  R  NS V
Sbjct: 290 NFKEGKIRVLVATDIAARGIDVDGLSHVINYD-----LPDVPETYVHRIGRTGRAGNSGV 344

Query: 687 -ILYADTITKSIQLAIDET 704
            I + D   KS    I++T
Sbjct: 345 AISFCDVDEKSALKDIEKT 363


>gi|239996759|ref|ZP_04717283.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
          Length = 596

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 15/192 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV------EDVYDEIN 576
            T + SAT PG  +    + +   + ++    V     IR    Q+      E +   + 
Sbjct: 183 QTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRIME 242

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +    G  +++ V TK    +L + L  R   V  ++ ++    R   +  L+ GK D+L
Sbjct: 243 VEVFDG--MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDIL 300

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  +++  GLD+     V   D           S +  IGR  R       IL+     K
Sbjct: 301 VATDVVARGLDVERVSHVINYD-----IPYDSESYVHRIGRTGRAGRQGDAILFISHREK 355

Query: 696 SIQLAIDETTRR 707
            +  +I++TT++
Sbjct: 356 RLLFSIEKTTKQ 367


>gi|254510324|ref|ZP_05122391.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221534035|gb|EEE37023.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 455

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 76/247 (30%), Gaps = 35/247 (14%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++     LL       T  QI  +   D      + + GF  P       L   
Sbjct: 135 TPGRLLDHFERGKLLL------TGVQIMVVDEADR-----MLDMGFI-PDIERIFSLTP- 181

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP----TGLVDPPVEI----------- 561
                   T+  SAT    E+E+     +    R            +E            
Sbjct: 182 ----FTRQTLFFSATMAP-EIERITDTFLSAPTRVEVARQATASETIEQGVVMFKGGRRD 236

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R A  + + +   I+    +    ++    K   +   + L +       +H ++   +R
Sbjct: 237 REASQKRKTLRALIDAEGDKCTNAIIFCNRKTDVDICAKSLKKYGYDAAAIHGDLDQSQR 296

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
           ++ +   R G   +LV  ++   GLD+P    V   D    G        I   GRA R 
Sbjct: 297 MKTLDGFRDGTLRLLVASDVAARGLDVPSVSHVFNFDVP--GHPEDYVHRIGRTGRAGRE 354

Query: 682 VNSKVIL 688
             +  I 
Sbjct: 355 GKAITIC 361


>gi|254506544|ref|ZP_05118685.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
 gi|219550417|gb|EED27401.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
          Length = 419

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 82/224 (36%), Gaps = 19/224 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT------PGSWELEQCQGIIVEQII 549
            + + GF +P     R L+   +N +R  T+  SAT        +++L Q + + V+   
Sbjct: 163 RMLDMGF-MPDIQ--RILK--RFNAVR-QTLFFSATFDKRIKNIAYKL-QSEPVEVQVSA 215

Query: 550 RPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRV 609
             +        +     + +       + ++   ++L+   TK+ ++ L + L    I+ 
Sbjct: 216 SNSTAETVKQMVYPVDKKRKAELLAYLIGSRNWQQVLVFTKTKQGSDALVKELKLDGIKA 275

Query: 610 RYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT 669
             ++ +     R + + D + GK   L+  ++   GLDI E   V   D           
Sbjct: 276 ASINGDKSQGARQKALDDFKAGKIRALIATDVAARGLDIQELEQVVNFD-----MPYKAE 330

Query: 670 SLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRREKQL 712
             +  IGR  R       + +       +  AI+     R  Q 
Sbjct: 331 DYVHRIGRTGRAGKEGFAVSFMSRDEHYLLEAIERLLDTRLPQE 374


>gi|119485555|ref|ZP_01619830.1| hypothetical protein L8106_24270 [Lyngbya sp. PCC 8106]
 gi|119456880|gb|EAW38007.1| hypothetical protein L8106_24270 [Lyngbya sp. PCC 8106]
          Length = 508

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 19/157 (12%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDL--------TEYLYERNIRVRYMHSEVKTLERIEII 625
           EI L  +  LR+L  +L++   E +        T Y   R+  +  +  +    ER +I+
Sbjct: 315 EIALCTEGKLRVLTNLLSQHYPERILIFTGDNATVYRISRDFLIPAITHQTPVKERHQIL 374

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV--- 682
              R G++  LV  ++L EG+D+P+  +  IL         S+   IQ +GR  R     
Sbjct: 375 SKFRQGEYKTLVASHVLNEGVDVPDARIAIILSGTA-----SEREYIQRLGRVLRKGSQA 429

Query: 683 NSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHN 719
           N + +LY      +   A + T++RR+ Q +++   N
Sbjct: 430 NKQAVLYEVVTENT---AEERTSQRRKGQNKYSADQN 463


>gi|107028773|ref|YP_625868.1| DEAD/DEAH box helicase-like [Burkholderia cenocepacia AU 1054]
 gi|116690068|ref|YP_835691.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|105897937|gb|ABF80895.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
 gi|116648157|gb|ABK08798.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 516

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I ++Q +     +   V     R   + + D + 
Sbjct: 238 QTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIAQTVHYVDDRDHKDRLLDHLL 297

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  + ++   TK  A+ L   L +       +H ++    R   IR LR  +  VL
Sbjct: 298 -RDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARNRTIRALRERRVRVL 356

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S + +    +  +
Sbjct: 357 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGIAVSL--VHHA 409

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 410 EQGALKRIER 419


>gi|149038674|gb|EDL92963.1| rCG22084, isoform CRA_b [Rattus norvegicus]
          Length = 689

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 87/257 (33%), Gaps = 34/257 (13%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 317 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 376

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 377 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 435

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 436 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICVCFYQ 490

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                         R   QL +  +K  I  + V   +   +D +  +            
Sbjct: 491 P-------------RERGQLRYVEQKAGITFKRVG--VPSTMDLVKSKSMDAIRSLASVS 535

Query: 752 QLSLS--KKKGKAHLKS 766
             ++   +   +  ++ 
Sbjct: 536 YAAVDFFRPSAQRLIEE 552


>gi|145474053|ref|XP_001423049.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124390109|emb|CAK55651.1| unnamed protein product [Paramecium tetraurelia]
          Length = 651

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 21/200 (10%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII------VEQII 549
            +  +GF      +N       +N  +   ++ SAT   W  E     +      +  I 
Sbjct: 183 QMLNFGF-----QENIEKIMSYFNERKIQMLLFSATIPDWVKELSHKYMEANTKHINLIK 237

Query: 550 RPTGLVDPPVE---IRSARTQVEDVY-DEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
           R        V+   ++ AR Q+     D +++   +  R ++   TKR   ++  +  + 
Sbjct: 238 RHETQTSTTVKHYALQCARNQLSGAIGDVVSVYGGRHARTIIFCETKRECNEIILH-SKL 296

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
               + +H ++   +R       + GKF  LV  N+   GLD P+  L+   +  K+   
Sbjct: 297 PAETQPLHGDIPQQQRTVTFEGFKNGKFKCLVATNVAARGLDFPQVDLIIQCNPPKD--- 353

Query: 666 RSKTSLIQTIGRAARNVNSK 685
               S I   GR  R     
Sbjct: 354 --IESYIHRSGRTGRAGKDG 371


>gi|53804862|ref|YP_113487.1| DEAD-box ATP dependent DNA helicase [Methylococcus capsulatus str.
           Bath]
 gi|53758623|gb|AAU92914.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Methylococcus
           capsulatus str. Bath]
          Length = 453

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 68/199 (34%), Gaps = 19/199 (9%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVE----QIIR---PTGLVDPPVEIRSARTQVEDVYD 573
            +   ++ SAT          G++      ++ R    + LVD  V + +   + + +  
Sbjct: 187 KQRQNMLFSATFSDEIRTLADGLLNNPGYVEVARRNAASDLVDQTVHLVAQEHKRDLLTH 246

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I        ++L+   TK  A  L E L E  I    +H       R   + D + G  
Sbjct: 247 LI--RRHDWRQVLVFTRTKHGANRLAEKLAEDGIPAAAIHGNKSQSARTRALADFKDGTV 304

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD-- 691
            VLV  ++   GLDI +   V   +             +  IGR  R   +   +     
Sbjct: 305 PVLVATDIAARGLDIDQLPHVVNFE-----LPNVPEDYVHRIGRTGRAGRAGSAVSLVAK 359

Query: 692 ---TITKSIQLAIDETTRR 707
               +  SI+  I    +R
Sbjct: 360 EELKLLGSIERLIKRPIQR 378


>gi|153207356|ref|ZP_01946093.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161830442|ref|YP_001596593.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           331]
 gi|165918485|ref|ZP_02218571.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           334]
 gi|120576665|gb|EAX33289.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161762309|gb|ABX77951.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           331]
 gi|165917853|gb|EDR36457.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           334]
          Length = 411

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 16/198 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGII-----VEQIIR 550
            + + GF LP       L  E         ++ SAT      E    ++     +E   R
Sbjct: 162 RMLDMGF-LPDIRRILKLLPES-----RQNLLFSATFSKEIKELTDKLLHSPALIEVARR 215

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
            T        +     Q +       + ++   ++L+   TK  A  L++ L    +   
Sbjct: 216 NTAAARITHVVHPVDRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSA 275

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H       R+  +   + GK  VLV  ++   GLDI +   V   +        +   
Sbjct: 276 AIHGNKSQAARMRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFE-----LPDAAKD 330

Query: 671 LIQTIGRAARNVNSKVIL 688
            +  +GR  R  N  V +
Sbjct: 331 YVHRVGRTGRASNDGVAI 348


>gi|146292357|ref|YP_001182781.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145564047|gb|ABP74982.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 481

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 64/186 (34%), Gaps = 10/186 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
              T++ SAT      +  Q ++ E     +   T       E+     + +       +
Sbjct: 182 VHQTMLFSATYSDAVKQLAQKMLNEPQWVNVADTTTASTVVQEVYRVDKRRKAELLSELV 241

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                 ++L+   TK  AE L + L    I     H +     R  ++ D +LGK  VLV
Sbjct: 242 GRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFKLGKLRVLV 301

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKS 696
             ++   GLDI    LV  L+             I  IGR  R     + I +       
Sbjct: 302 ATDVAARGLDIQALPLVINLELPFF-----AEDYIHRIGRTGRAGLAGRAISFVSPSDDE 356

Query: 697 IQLAID 702
           +   I+
Sbjct: 357 MLAEIE 362


>gi|323353284|ref|ZP_08087817.1| DNA helicase RecG [Streptococcus sanguinis VMC66]
 gi|322121230|gb|EFX92993.1| DNA helicase RecG [Streptococcus sanguinis VMC66]
          Length = 671

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 86/202 (42%), Gaps = 26/202 (12%)

Query: 523 PTTIVVSATPGSWELE-QCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYDEINLAAQ 580
           P  ++++ATP    L     G +   II        P+  R  +  Q+E V D +     
Sbjct: 399 PDVLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELH 458

Query: 581 QGLRILLTV------------LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +G ++                    + E+LT Y  ++ ++V  +H ++K+ E+  I++D 
Sbjct: 459 KGAQVYFISPLIEESEALDLKNAIALEEELTAYFGQQ-VQVALLHGKMKSEEKEAIMQDF 517

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G+ D+LV   ++  G+++P   ++ I+DAD+ G  +    L Q  GR  R       +
Sbjct: 518 KEGRTDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQ----LHQLRGRVGRGSKQSYAV 573

Query: 689 YADTITKSIQLAIDETTRRREK 710
                         E+ +RR K
Sbjct: 574 LVANPKT-------ESGKRRMK 588



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN-LLREGLDIPEC 651
           +  + L +   E  +    +   +K  ER E +  +  G+ D++VG + L++EG+     
Sbjct: 316 QHFDSLAQLFPELKL--ALLTGGMKAAERRETLAAIEKGQVDMIVGTHALIQEGVRYHAL 373

Query: 652 GLVAILDADKEGFLRSKTSL 671
           GLV I +  + G  + +   
Sbjct: 374 GLVIIDEQHRFGVEQRRILR 393


>gi|303285500|ref|XP_003062040.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456451|gb|EEH53752.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 362

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 71/209 (33%), Gaps = 27/209 (12%)

Query: 517 EWNCLRPTTIVVSAT-PG------------SWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           ++       ++ SAT P              + +   + + ++ I +    V+   ++  
Sbjct: 156 DFLPRNRQILLYSATFPVTVKEFKDRYLRKPYVINLMEELTLKGITQYYAFVEEKQKVH- 214

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
                    + +    Q    I +   +    E L + + E      Y+H+++    R  
Sbjct: 215 -------CLNTLFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQSHRNR 266

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  D R G    LV  +L   G+DI    +V   D     F ++  + +  +GR+ R  +
Sbjct: 267 VFHDFRNGACRNLVSSDLFTRGIDIQSVNVVINFD-----FPKNSETYLHRVGRSGRFGH 321

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQL 712
             + +   T      L   E     E Q 
Sbjct: 322 LGISVNLITYDDRFNLFRIEQELGTEIQQ 350


>gi|170034912|ref|XP_001845316.1| DEAD-box helicase Dbp80 [Culex quinquefasciatus]
 gi|167876609|gb|EDS39992.1| DEAD-box helicase Dbp80 [Culex quinquefasciatus]
          Length = 530

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 31/205 (15%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ--VEDVYDEINLAAQQ 581
             +  SAT   +E E  +            +V  P+ IR AR Q  ++++         Q
Sbjct: 320 QMMFFSAT---YEREVMEFAEY--------IVPNPIVIRLAREQESLDNIKQYYVKCRNQ 368

Query: 582 GLR---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
             +                ++   T++ A  L+  + +    V  +  ++   +R+ ++ 
Sbjct: 369 DEKYQAISNIYGVITVGQAIIFCHTRKTAGWLSGKMSQDGHSVAVLSGDLTVEQRLMVLD 428

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKT-SLIQTIGRAARNVNSK 685
             R G   VL+  N+L  G+D+ +  +V   D   +   R+   + +  IGR  R   + 
Sbjct: 429 RFRAGMEKVLITTNVLSRGIDVEQVTIVVNFDLPTDQQGRADCETYLHRIGRTGRFGKNG 488

Query: 686 VILYADTITKSIQ--LAIDETTRRR 708
           + +      +S+    AI+   ++R
Sbjct: 489 IAINLVDSDRSMAICRAIESHFKKR 513


>gi|154288372|ref|XP_001544981.1| hypothetical protein HCAG_02028 [Ajellomyces capsulatus NAm1]
 gi|160380612|sp|A6QXC1|DBP3_AJECN RecName: Full=ATP-dependent RNA helicase DBP3
 gi|150408622|gb|EDN04163.1| hypothetical protein HCAG_02028 [Ajellomyces capsulatus NAm1]
          Length = 487

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 8/150 (5%)

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL---RILLTVLTKRMAEDLTEYLYER 605
           IR    +   VE+     +   +   +N   +      ++L+  L K+ A  +  ++  +
Sbjct: 286 IRANTRIKQIVEVVKPENKESRLLSLLNQYQRGRNAMDKVLVFCLYKKEATRIERFIRSK 345

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
             +V  +H ++   ER   +   + G   VLV  ++   GLDIP   LV  +      F 
Sbjct: 346 GFKVAGIHGDMNQTERFNSLDAFKSGSVPVLVATDVAARGLDIPAVKLVLNV-----TFP 400

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITK 695
            +    +  IGR  R  +  + +   T   
Sbjct: 401 LTVEDYVHRIGRTGRAGSDGLAITMFTEND 430


>gi|313114933|ref|ZP_07800430.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622755|gb|EFQ06213.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 395

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 13/165 (7%)

Query: 546 EQIIRPTGLVDPPVEIR----SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEY 601
           E  ++P     P +       S R ++ D+   I    +   R+++   TK     L   
Sbjct: 202 EITVQPKEESQPKITQYMLETSGRNKLSDLAQIII--GENYKRVMVFCDTKFNTATLANQ 259

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L      V  +H ++   ER +I+++ R GK  +LV  ++   G+D+ +   V   D   
Sbjct: 260 LARLGFSVDCLHGDLSQKERNQIMQNFRDGKLAILVATDVAARGIDVSDVDAVINYDVPS 319

Query: 662 EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           E            IGR  R     V        +  +  + E  R
Sbjct: 320 EN-----EHYTHRIGRTGRAKKEGVSYLFYVPEE--KKRVQELLR 357


>gi|290968690|ref|ZP_06560228.1| DEAD/DEAH box helicase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781343|gb|EFD93933.1| DEAD/DEAH box helicase [Megasphaera genomosp. type_1 str. 28L]
          Length = 420

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 81/252 (32%), Gaps = 21/252 (8%)

Query: 521 LRPTTIVVSAT-PGSWE---LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            R   +  SAT P   +    +      V  ++  + +    +E R    + E  +  + 
Sbjct: 175 KRRQLLFFSATVPDKIKSLAKKHMHNPFVFHVLEGSSIALETIEQRIYMIKEEQKFSFLC 234

Query: 577 LAAQQ--GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
               +      ++   TK     L   L      V  +H ++    R +++RD    K  
Sbjct: 235 KLLHEMNPYLSVIFCNTKERTSILAGQLIRAGFAVSELHGDLSQGRRTQVLRDFSKAKTQ 294

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   GLDI     V   D             I  IGR  R  N  + +      
Sbjct: 295 LLVATDIAARGLDIAGITHVFNYDV-----PHDIDYYIHRIGRTGRAGNEGLAV------ 343

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
            ++  A DE   RR   +EH  +  I   +   KI     P   +        +      
Sbjct: 344 -TLATAADEDWVRR---IEHAIRATITKYTASGKIQVKQAPTAPKKKRIYKDKLPVATYQ 399

Query: 755 LSKKKGKAHLKS 766
            +K+K    L  
Sbjct: 400 ATKEKRHKTLHK 411


>gi|255656171|ref|ZP_05401580.1| ATP-dependent RNA helicase [Clostridium difficile QCD-23m63]
          Length = 497

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 19/211 (9%)

Query: 567 QVEDVYDEINLA-----------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           Q++D   + N             ++    +++   TK     L   + +    +R +H++
Sbjct: 219 QIDDKIIKTNEREKYILLKELIYSENPKSVIIFCNTKEKVSKLYNKMSKEGFLIRELHAD 278

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    RI +I+D +  KF+VLV  ++   G+ I +  LV   D       + K + I  I
Sbjct: 279 LSQERRIFVIKDFKKQKFNVLVSSDVASRGIHIDDISLVINYDV-----PQDKENYIHRI 333

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH-NINPQSV--KEKIMEV 732
           GR  R  NS   +   T      +   ET    +     + +   I    +  +E   E+
Sbjct: 334 GRTGRKRNSGKAITIVTEKDEKYIENIETYIGYKINELKDIEKSRITHGKILFEEYSKEI 393

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
           +  +     A  N          ++ +    
Sbjct: 394 LKEVSKRKKADKNSYKGKDIKLNTESEVVKL 424


>gi|237808150|ref|YP_002892590.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237500411|gb|ACQ93004.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 468

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 12/197 (6%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVE-----QIIRPTGLVDPPVEIRSARTQVEDVYDEI 575
               T + SAT  +  +E   G I++      I     +     E+      ++     +
Sbjct: 178 RLRQTWLFSATLNNQSVEMLSGYILKAPQSISIGEMHAIHADINEVFHLCDHLDHKQALL 237

Query: 576 NLAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                Q    + ++ + T+   E L +   E NI    +  ++K  +R ++I     G  
Sbjct: 238 KHLLSQPDYQQAIVFLATREDTERLAKQYSELNIPALALSGDMKQAQRNQVIDQFSRGHA 297

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            VL   ++   GLD+    LV   D  K          I  IGR  R  N    +   + 
Sbjct: 298 KVLFTTDVAARGLDLLHVSLVVNFDMPKL-----PEEYIHRIGRTGRAGNQGNAVSLISP 352

Query: 694 TKSIQLAIDETTRRREK 710
              +        +RRE 
Sbjct: 353 KDWVSFQGLMALQRREV 369


>gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 494

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 73/212 (34%), Gaps = 18/212 (8%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT         +G++   VE  + P       VE  I     Q +     I+
Sbjct: 178 KRQNLMFSATFSDDIRNLAKGLVNNPVEISVTPRNATAKTVEQYIYPVD-QKQKTAALIH 236

Query: 577 LAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           L  Q   + +L+   TK  A  + + L    +    +H       R + + + + G+  V
Sbjct: 237 LVKQNEWKQVLVFSRTKHGANRIAKNLEASGLTAAAIHGNKSQGARTKALANFKSGEVRV 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTIT 694
           LV  ++   G+DI +   V   D             +  IGR  R   N + +       
Sbjct: 297 LVATDIAARGIDIDQLPNVVNFD-----LPNVPEDYVHRIGRTGRAGANGQAVSLVSGDE 351

Query: 695 KSIQLAIDETTRRREKQ-LEHNKKHNINPQSV 725
             +   I+    R  KQ +   +     P  V
Sbjct: 352 SKLLRDIE----RLIKQNIPRKEVEGFVPTQV 379


>gi|324503778|gb|ADY41635.1| ATP-dependent RNA helicase DDX19B [Ascaris suum]
          Length = 567

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 69/187 (36%), Gaps = 27/187 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            +++ SAT     +   + II E ++         + +R     + ++       A +  
Sbjct: 352 QSLLFSATYDDAVIAFAESIIKEAVV---------ITVRREEQTLSNIKQYYVKCANREE 402

Query: 584 R---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +                ++   T++ AE L   +  R   V  +H E+   ER  +I+  
Sbjct: 403 KYEAVINLYGGLTIASAIIFCYTRKSAEWLAARMSARGHVVTLLHGELPIEERARVIQCF 462

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDAD---KEGFLRSKTSLIQTIGRAARNVNSK 685
           + G + VLV  N+   G+D+ +  +V   D      E       + +  IGR  R   + 
Sbjct: 463 KEGIYKVLVTTNVCARGIDVSQVTVVINYDPPLTFSETPQPDYETYLHRIGRTGRFGKAG 522

Query: 686 VILYADT 692
           + +   +
Sbjct: 523 IAINFVS 529


>gi|323491944|ref|ZP_08097113.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323313802|gb|EGA66897.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 482

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 20/199 (10%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT      E  +G++   VE  + P       +E  I  A  +       + 
Sbjct: 178 KRQNLLFSATFSQEIRELAKGLVNNPVEISVSPENSTAVTIEQSIYPADKR--KKAPMLV 235

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              + G   ++L+   TK  A  L  +L +  I    +H       R   + D + G   
Sbjct: 236 KLIKDGDWKQVLVFCRTKHGANRLAHFLNKEEITAAPIHGNKSQGARTRALADFKSGDVR 295

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTI 693
           VLV  ++   G+DIP+   V   +             +  IGR  R     K I   +  
Sbjct: 296 VLVATDIAARGIDIPQLPQVVNFE-----LPNVSEDYVHRIGRTGRAGEVGKAISLVEAD 350

Query: 694 TKSIQLAIDETTRRREKQL 712
             S    I+     R  Q 
Sbjct: 351 EASDLFGIE-----RLIQQ 364


>gi|242034037|ref|XP_002464413.1| hypothetical protein SORBIDRAFT_01g017770 [Sorghum bicolor]
 gi|241918267|gb|EER91411.1| hypothetical protein SORBIDRAFT_01g017770 [Sorghum bicolor]
          Length = 507

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT             P  + +     + ++ I +    V+   ++         
Sbjct: 308 QLLMFSATFPVTVKEFKEKYLPRPYVINLMDELTLKGITQYYAFVEERQKVH-------- 359

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   +    E L + + E      Y+H+++    R  +  D R 
Sbjct: 360 CLNTLFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 418

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F ++  + +  +GR+ R  +  + +  
Sbjct: 419 GACRNLVCTDLFTRGIDIQAVNVVINFD-----FPKTSETYLHRVGRSGRYGHLGLAVNL 473

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            T      L        R +Q    +   I PQ
Sbjct: 474 ITYEDRFNL-------YRIEQELGTEIKTIPPQ 499


>gi|223889464|ref|ZP_03624050.1| transcription-repair coupling factor [Borrelia burgdorferi 64b]
 gi|223885150|gb|EEF56254.1| transcription-repair coupling factor [Borrelia burgdorferi 64b]
          Length = 1125

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 96/253 (37%), Gaps = 22/253 (8%)

Query: 173 LLGVTGSGKTFTMAKV--IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L G  G  K F + K+       +  +++     L      + KN       + F   Y 
Sbjct: 32  LTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTL-----DKIKNDLQVITNQIFELNY- 85

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
            + P  Y         K +  NE+I  +         +     +    S +  I    + 
Sbjct: 86  -FSPLVYKG----IGSKSTIFNERIKFL----FNFYKKNPGIYITVLKSLLSKIPDKNTL 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            + I +++   ++   ++  +L+   Y++     I G F V G+ I+I+P   E    R+
Sbjct: 137 LKNIYKIEKNTNINTADIEKTLITLGYEKTLRVTIPGEFTVKGEIIDIYP-FGEQNPIRI 195

Query: 351 SMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKE-ELKMRLI 408
           ++  + IEEI +F PLT  K    +   +I      +    T+NT    IK  E K  L 
Sbjct: 196 ALNFDKIEEIKKFNPLTQLKHDNEILEFQILPKKEIIWDDKTINTLKTKIKSVEYKKILE 255

Query: 409 E--LEKEGRLLEA 419
           E   +KE +  E 
Sbjct: 256 ELDFKKETKTEEM 268



 Score = 47.0 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 22/190 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +     I P   V     + S    +  +   I     +
Sbjct: 733 CLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESFSELL--IKHAIESELSR 790

Query: 582 GLRILL-------TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             ++ L           K + E LT Y      R+  +H ++   E   I+ +     + 
Sbjct: 791 DGQVFLVNHNIEELYYLKTLIERLTPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQ 845

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  G+DIP    + I +A+K G  +    L Q  GR  R        +    +
Sbjct: 846 ILLATTIIENGIDIPNANTIIINNANKFGLAQ----LYQLKGRVGRGSQKAYAYFLYQDS 901

Query: 695 KSI-QLAIDE 703
           + + + +I+ 
Sbjct: 902 EKLNERSIER 911


>gi|150391484|ref|YP_001321533.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951346|gb|ABR49874.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 484

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 86/245 (35%), Gaps = 27/245 (11%)

Query: 530 ATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTV 589
             P   E+E+    +              VE R     + D+        +     ++  
Sbjct: 200 KDPIHAEIEEESSAVDR-----ISQERYTVEYRDKMKLLSDI-----TIVENPDSCIIFC 249

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
            TK+  +++ + L   N     +H  ++  +R+ ++ + + G F  LV  ++   G+DI 
Sbjct: 250 NTKQRVDEVNDELIRLNYTCEKIHGGMEQRDRVRVMNEFKQGYFRYLVATDVAARGIDID 309

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRRR 708
              LV   D       + K S +  IGR  R +   + I +           I      R
Sbjct: 310 NISLVINYD-----IPQDKESYVHRIGRTGRISREGRAITFVTQYEDKFLKDI-----HR 359

Query: 709 EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLR 768
               E         ++V +   E ++ I      T     + +   LSK+  K H+ + +
Sbjct: 360 YIGKEIPLMQRPEIETVNDSKEEFVEKIN-----TKPEVKETKGAPLSKEILKLHINAGK 414

Query: 769 K-QMH 772
           K +M 
Sbjct: 415 KTKMR 419


>gi|149192208|ref|ZP_01870425.1| ATP-dependent RNA helicase SrmB [Vibrio shilonii AK1]
 gi|148833966|gb|EDL50986.1| ATP-dependent RNA helicase SrmB [Vibrio shilonii AK1]
          Length = 407

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 21/212 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-RSARTQVEDVYDEINLA-- 578
           R  T++ SAT    E    +G   + +  P  +   P    R   TQ     D       
Sbjct: 180 RKQTLLFSAT---LEGRGVEGFTADLLKAPAEISAEPSTRERKKITQWYHRADNAEHKLA 236

Query: 579 ------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                  +Q  R ++ + T+    +L + L    I   ++  E+    R   I   R G 
Sbjct: 237 LLKHILTEQAQRTIVFLKTRERLGELRQQLDSAQIPCSWIQGEMPQDRRNNAISRFRDGS 296

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
            ++L+  ++   G+D+P+   V   D       RS    +  IGR AR       I   +
Sbjct: 297 VNILLATDVAARGIDLPDVSHVINYD-----LPRSADVYLHRIGRTARAGKKGTAISIVE 351

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
              + +   +D   R  ++ ++      + P 
Sbjct: 352 AHDQPM---MDRVGRYTKELIKERFIDGLRPT 380


>gi|77736089|ref|NP_001029743.1| ATP-dependent RNA helicase DDX19A [Bos taurus]
 gi|122140837|sp|Q3ZBV2|DD19A_BOVIN RecName: Full=ATP-dependent RNA helicase DDX19A; AltName: Full=DEAD
           box protein 19A
 gi|73587381|gb|AAI03094.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19A [Bos taurus]
 gi|296478245|gb|DAA20360.1| ATP-dependent RNA helicase DDX19A [Bos taurus]
          Length = 478

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 268 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNSRDEKFQ 321

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 322 ALCNIYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREG 381

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 382 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 440

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 441 MVDSKHSMNIL----NR---IQEHFNKK 461


>gi|316978689|gb|EFV61638.1| DEAD-box ATP-dependent RNA helicase 57 [Trichinella spiralis]
          Length = 627

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +K  AE L        +++ Y+HS++   ER   I+  R G   +L+   L+  
Sbjct: 426 VLIFVQSKDRAEQLYNEFKFDEVKIDYIHSDLPKKERENTIKKFRRGDTWILICTELIGR 485

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
           GLD     LV   D     F  S  S I  IG+ 
Sbjct: 486 GLDFKCVNLVINFD-----FPTSSISYIHRIGKV 514


>gi|302874235|ref|YP_003842868.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689501|ref|ZP_07631947.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302577092|gb|ADL51104.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
           743B]
          Length = 536

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 98/258 (37%), Gaps = 27/258 (10%)

Query: 524 TTIVVSAT-PGS-------WELEQCQGIIVEQ-IIRPTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT P +       +     + I +E+  +  + +     EI+++  + E +   
Sbjct: 180 QTLLFSATMPDAIKRLSKRYMKSDAKLISIEKNTVTASTITQYYYEIKNSD-RFESLCRI 238

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I+  A +    ++   TK+  ++L   +  R   V  MH ++   +R+  ++  +    D
Sbjct: 239 ID--ADEPEAAIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLD 296

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
            LV  ++   G+D+     V   D       +   S +  IGR  R           T  
Sbjct: 297 FLVATDVAARGIDVENVTHVINYD-----LPQDAESYVHRIGRTGRANKEGKAYTLVTPR 351

Query: 695 KSI-QLAIDETTRRREKQLEHN------KKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           + I    I++TT   + +++ N      + +++  ++V  K+ + I+   L         
Sbjct: 352 EYIVLKQIEKTT---KSKIKRNSVPTVDEIYDVKYKNVLNKVRDTIENEDLSKFIPYATE 408

Query: 748 IDAQQLSLSKKKGKAHLK 765
           +D     +        + 
Sbjct: 409 LDDDYSLVDVAAALMKIA 426


>gi|225557690|gb|EEH05975.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus G186AR]
          Length = 487

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 8/150 (5%)

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL---RILLTVLTKRMAEDLTEYLYER 605
           IR    +   VE+     +   +   +N   +      ++L+  L K+ A  +  ++  +
Sbjct: 286 IRANTRIKQIVEVVKPENKESRLLSLLNQYQRGRNAMDKVLVFCLYKKEATRIERFIRSK 345

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
             +V  +H ++   ER   +   + G   VLV  ++   GLDIP   LV  +      F 
Sbjct: 346 GFKVAGIHGDMNQTERFNSLNAFKSGSVPVLVATDVAARGLDIPAVKLVLNV-----TFP 400

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITK 695
            +    +  IGR  R  +  + +   T   
Sbjct: 401 LTVEDYVHRIGRTGRAGSDGLAITMFTEND 430


>gi|221123619|ref|XP_002156523.1| PREDICTED: PL10-related protein CnPL10 [Hydra magnipapillata]
          Length = 628

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 585 ILLTVLTKRMAEDLTEYL--YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            L+ V TKR A+ L ++L     N     +H +    ER + +   R+G   +LV   + 
Sbjct: 432 TLVFVETKRGADALEQFLFRCPENYHATSIHGDRHQKEREQALASFRVGTTPILVATAVA 491

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI--LYADTITKSIQLA 700
             GLDIP    V   D             +  IGR  R  ++ +    + D      +  
Sbjct: 492 ARGLDIPNVKHVINFD-----MPSDIEEYVHRIGRTGRVGHTGLATSFFNDKNRNVARDL 546

Query: 701 ID 702
           +D
Sbjct: 547 MD 548


>gi|197246501|gb|AAI69082.1| Ddx23 protein [Rattus norvegicus]
          Length = 798

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 569 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 628

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 629 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 686

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 687 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 741

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 742 AITFLTKEDSAVFYELKQAILES 764


>gi|48146547|emb|CAG33496.1| DDX19 [Homo sapiens]
          Length = 479

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 269 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 322

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 323 ALCNLYGATTIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 382

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 383 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 441

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 442 MVDSKHSMNIL----NR---IQEHFNKK 462


>gi|326934003|ref|XP_003213086.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Meleagris
           gallopavo]
          Length = 944

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEIRSAR-TQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  +  ++   +   +
Sbjct: 433 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRL 492

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L + +  +  +H ++   ER ++I + +     +
Sbjct: 493 VEFTSSG-SVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPI 551

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 606

Query: 696 S 696
           S
Sbjct: 607 S 607


>gi|323455619|gb|EGB11487.1| hypothetical protein AURANDRAFT_52587 [Aureococcus anophagefferens]
          Length = 418

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
              + SAT                +E+     + ++ I +    V+   ++         
Sbjct: 219 QICLFSATFPVTVKNFKEKFIHNPYEINLMDDLTLKGITQFYAFVEERQKVH-------- 270

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
               +    +    + +   +    E L + + E      Y+H++++   R  +  + R 
Sbjct: 271 CLHTLFTKLEINQSV-IFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRN 329

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F ++  + +  IGRA R  +  + +  
Sbjct: 330 GSTRHLVSSDLFTRGIDIQSVNVVINFD-----FPKTSETYLHRIGRAGRFGHLGLAVNL 384

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKI 729
            T      L       R E +L    K    P +++ ++
Sbjct: 385 ITFDDRFNL------YRIESELATEIK--PIPPTIEREL 415


>gi|314983245|gb|EFT27337.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA3]
 gi|315090093|gb|EFT62069.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA4]
          Length = 494

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 16/174 (9%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-----DVYDEIN 576
            T++ SAT P     L + Q      + R  G  D    +   +  V      D  + I 
Sbjct: 171 QTMLFSATMPAPIMALARSQLHRPVHV-RAEG-ADTQATVPDTQQFVYQAHPLDKIEIIG 228

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              Q     ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G   
Sbjct: 229 RILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGDAT 288

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +LV  ++   G+D+     V   +         + + +  IGR  R     V +
Sbjct: 289 ILVATDVAARGIDVTGVSHVINHEC-----PEDEKTYVHRIGRTGRAGAKGVAV 337


>gi|15594968|ref|NP_212757.1| transcription-repair coupling factor (mfd) [Borrelia burgdorferi
           B31]
 gi|3914012|sp|O51568|MFD_BORBU RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
           AltName: Full=ATP-dependent helicase mfd
 gi|2688542|gb|AAC66973.1| transcription-repair coupling factor (mfd) [Borrelia burgdorferi
           B31]
          Length = 1125

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 96/253 (37%), Gaps = 22/253 (8%)

Query: 173 LLGVTGSGKTFTMAKV--IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L G  G  K F + K+       +  +++     L      + KN       + F   Y 
Sbjct: 32  LTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTL-----DKIKNDLQVITNQIFELNY- 85

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
            + P  Y         K +  NE+I  +         +     +    S +  I    + 
Sbjct: 86  -FSPLVYKG----IGSKSTIFNERIKFL----FNFYKKNPGIYITVLKSLLSKIPDKNTL 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            + I +++   ++   ++  +L+   Y++     I G F V G+ I+I+P   E    R+
Sbjct: 137 LKNIYKIEKNTNINTADIEKTLITLGYEKTLRVTIPGEFTVKGEIIDIYP-FGEQNPIRI 195

Query: 351 SMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKE-ELKMRLI 408
           ++  + IEEI +F PLT  K    +   +I      +    T+NT    IK  E K  L 
Sbjct: 196 ALNFDKIEEIKKFNPLTQLKHDNEILEFQILPKKEIIWDDKTINTLKTKIKSVEYKKILE 255

Query: 409 E--LEKEGRLLEA 419
           E   +KE +  E 
Sbjct: 256 ELDFKKETKTEEM 268



 Score = 47.0 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 22/190 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +     I P   V     + S    +  +   I     +
Sbjct: 733 CLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESFSELL--IKHAIESELSR 790

Query: 582 GLRILL-------TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             ++ L           K + E LT Y      R+  +H ++   E   I+ +     + 
Sbjct: 791 DGQVFLVNHNIEELYYLKTLIERLTPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQ 845

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  G+DIP    + I +A+K G  +    L Q  GR  R        +    +
Sbjct: 846 ILLATTIIENGIDIPNANTIIINNANKFGLAQ----LYQLKGRVGRGSQKAYAYFLYQDS 901

Query: 695 KSI-QLAIDE 703
           + + + +I+ 
Sbjct: 902 EKLNERSIER 911


>gi|328783258|ref|XP_392069.4| PREDICTED: ATP-dependent RNA helicase abstrakt isoform 1 [Apis
           mellifera]
          Length = 621

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 73/211 (34%), Gaps = 17/211 (8%)

Query: 491 FHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR 550
                 + + GF      D R + F  +   R  T++ SAT         +  +V+ +  
Sbjct: 342 MDEADRMIDMGFE----EDVRTI-FSFFRGQR-QTLLFSATMPKKIQNFARSALVKPVTI 395

Query: 551 PTG-----LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYER 605
             G      ++   E+   + Q   +   +    +    +L+    K+  + + EYL  +
Sbjct: 396 NVGRAGAASMNVVQEVEYVK-QEAKIVYLLECLQKTPPPVLIFAEKKQDVDAIHEYLLLK 454

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
            +    +H      ER   +   R G+ DVLV  ++  +GLD  +   V   D       
Sbjct: 455 GVEAVAIHGGKDQEERSRSVEAFREGRKDVLVATDVASKGLDFADVQHVINYD-----MP 509

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKS 696
               + +  IGR  R+  + +          
Sbjct: 510 DDVENYVHRIGRTGRSGRTGIATTFINKAND 540


>gi|328723043|ref|XP_001951330.2| PREDICTED: putative ATP-dependent RNA helicase me31b-like isoform 1
           [Acyrthosiphon pisum]
          Length = 446

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 79/227 (34%), Gaps = 47/227 (20%)

Query: 524 TTIVVSAT-P------------GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT P              +E+   + + ++ + +    V    ++         
Sbjct: 232 QILLYSATFPLTVKQFMDKHLRSPYEINLMEELTLKGVTQYYAFVQEKQKVH-------- 283

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   + +  E L + + +      Y+H+++    R  +  D R 
Sbjct: 284 CLNTLFSKLQINQSI-IFCNSTQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRK 342

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+D+    +V   D     F +   + +  IGR+ R  +  + +  
Sbjct: 343 GSCRNLVCSDLFTRGIDVQAVNVVINFD-----FPKMAETYLHRIGRSGRFGHLGIAINL 397

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ--SVKEKIMEVIDP 735
            T     + A+                H I  +  +  + I +VIDP
Sbjct: 398 ITYDD--RFAL----------------HRIEQELGTEIKPIPKVIDP 426


>gi|282853714|ref|ZP_06263051.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
 gi|282583167|gb|EFB88547.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
          Length = 494

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 16/174 (9%)

Query: 524 TTIVVSAT-PGS-WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-----DVYDEIN 576
            T++ SAT P     L + Q      + R  G  D    +   +  V      D  + I 
Sbjct: 171 QTMLFSATMPAPIMALARSQLHRPVHV-RAEG-ADTQATVPDTQQFVYQAHPLDKIEIIG 228

Query: 577 LAAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
              Q     ++++   TKR  + L++ L +R  + R +H ++  + R + ++  R G   
Sbjct: 229 RILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGDAT 288

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +LV  ++   G+D+     V   +         + + +  IGR  R     V +
Sbjct: 289 ILVATDVAARGIDVTGVSHVINHEC-----PEDEKTYVHRIGRTGRAGAKGVAV 337


>gi|254507577|ref|ZP_05119710.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           16]
 gi|219549464|gb|EED26456.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           16]
          Length = 377

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 67/207 (32%), Gaps = 36/207 (17%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-----RSARTQVEDVYDEIN 576
           +   ++ SAT  +   E  +           GLV+ P+E+      S    +E      +
Sbjct: 73  KRQNLLFSATFSAEIRELAK-----------GLVNDPIEVSVSKENSTAVTIEQSIYPAD 121

Query: 577 LAAQQGL-----------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
              +  +           + L+   TK  A  L  +L +  I    +H       R   +
Sbjct: 122 KRKKAPMLVKMIKDGDWKQTLVFCRTKHGANRLAFFLNKEGITAAPIHGNKSQGARTRAL 181

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D + G+  VLV  ++   G+DIP+   V   +             +  IGR  R     
Sbjct: 182 ADFKSGEVKVLVATDIAARGIDIPQLPQVVNFE-----LPNVSEDYVHRIGRTGRAGEVG 236

Query: 686 VILYADTITKSIQLAIDETTRRREKQL 712
                    ++ +L   E    R  Q 
Sbjct: 237 KAYSLVEAAEASELFGIE----RLIQQ 259


>gi|218283314|ref|ZP_03489366.1| hypothetical protein EUBIFOR_01955 [Eubacterium biforme DSM 3989]
 gi|218215942|gb|EEC89480.1| hypothetical protein EUBIFOR_01955 [Eubacterium biforme DSM 3989]
          Length = 388

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 67/169 (39%), Gaps = 11/169 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQI---IRPTG--LVDPPVEIRSARTQVEDVYDEIN 576
               +++SATP    +   +    E +    RP    L+ P V   S   QV  V  E  
Sbjct: 191 VGQKLMLSATPDEESMRLVEEKKTELVCLFERPHKHPLIVPKVIQVSVFLQVLIVIYECI 250

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +   + L+ V  KR    L + +    ++   +HS   T  + EI+   R  + +VL
Sbjct: 251 KFCRDNKQTLVFVPRKRDGTWL-KMILNLFVKTSLVHS--STENKDEILDCFRNKELEVL 307

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           V   LL  G+ IP    V +   +   F  +  SLIQ  GR  R+    
Sbjct: 308 VCTTLLERGITIPSVQ-VVVFKGNHSVF--TTASLIQIFGRVGRSFKDP 353


>gi|225426363|ref|XP_002271357.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 480

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 12/137 (8%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  D R G    LV  +L   G
Sbjct: 347 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG 406

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +DI    +V   D     F ++  + +  +GR+ R  +  + +   T      L      
Sbjct: 407 IDIQAVNVVINFD-----FPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNL------ 455

Query: 706 RRREKQLEHNKKHNINP 722
             R +Q    +   I P
Sbjct: 456 -YRIEQELGAEIKQIPP 471


>gi|71896321|ref|NP_001026097.1| ATP-dependent RNA helicase DDX42 [Gallus gallus]
 gi|82194905|sp|Q5F485|DDX42_CHICK RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|60098437|emb|CAH65049.1| hypothetical protein RCJMB04_2e15 [Gallus gallus]
          Length = 944

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEIRSAR-TQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  +  ++   +   +
Sbjct: 433 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRL 492

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L + +  +  +H ++   ER ++I + +     +
Sbjct: 493 VEFTSSG-SVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPI 551

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 606

Query: 696 S 696
           S
Sbjct: 607 S 607


>gi|302388236|ref|YP_003824058.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
 gi|302198864|gb|ADL06435.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
           WM1]
          Length = 471

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 80/247 (32%), Gaps = 33/247 (13%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           L+  T++ SAT      +    I+              +EI    + V+ +   +    +
Sbjct: 179 LKKQTLLFSATMPPDIAKLAGTILK---------APAKIEITPVSSTVDTIGQYVYFVDK 229

Query: 581 QGLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
              +               L+   TK  A+ L + L   N+  + +H +     R   + 
Sbjct: 230 SNKKDLLLHVLKDNNIVSALVFTRTKHGADRLNKQLSRNNVIAQAIHGDKSQGARQSALN 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + +     +L+  ++   G+DI E   V   D           + +  IGR  R      
Sbjct: 290 NFKNKSLRILIATDIAARGIDIDELTHVINYD-----LPDIPETYVHRIGRTGRAGLGGT 344

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNI 746
            +      +  +  +++  R   K++   K H   P  +K  +  +       +AA T  
Sbjct: 345 AISFCDYDE--KEQLNDIERLIGKKITEIKDH---PYPLKNNVPGIKAVQPRREAAKTEK 399

Query: 747 SIDAQQL 753
           +      
Sbjct: 400 TKAKHPE 406


>gi|290989740|ref|XP_002677495.1| dead box ATP-dependent RNA helicase [Naegleria gruberi]
 gi|284091103|gb|EFC44751.1| dead box ATP-dependent RNA helicase [Naegleria gruberi]
          Length = 618

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 59/163 (36%), Gaps = 14/163 (8%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E+     + ++ + +    V+   ++           + +    Q    I +   +  
Sbjct: 442 PYEINLMDELTLKGVTQYYAFVEERQKVH--------CLNTLFSKLQINQSI-IFCNSVN 492

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L + + E      Y+H+++    R  +  D R G    LV  +L   G+DI    +
Sbjct: 493 RVELLAKKITELGYSCFYIHAKMPQDLRNRVFHDFRNGACRNLVSSDLFTRGIDIQAVNV 552

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   D     F ++  + +  IGR+ R  +  + +   T    
Sbjct: 553 VINFD-----FPKNSETYLHRIGRSGRYGHLGLAINFVTYEDR 590


>gi|262372452|ref|ZP_06065731.1| superfamily II DNA and RNA helicase [Acinetobacter junii SH205]
 gi|262312477|gb|EEY93562.1| superfamily II DNA and RNA helicase [Acinetobacter junii SH205]
          Length = 383

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 77/206 (37%), Gaps = 14/206 (6%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI---IRPT 552
            L + GF  PS    R +RF  +   R  T++ SAT     L   +  + E +   I P 
Sbjct: 164 RLLDMGFI-PSVK--RIVRFSPFKEQR-QTLMFSATFSYDVLNLARQWLFEPVTVEIEPE 219

Query: 553 GLVDPPVEIRSARTQVEDVYDEINL--AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
              +  VE R    + +D Y  +      +   ++++    +     L ++L     +V 
Sbjct: 220 QKTNNDVEQRVYVVENKDKYKLLQEILREEPIDKVMIFANRRDQVRRLYDHLKRDGYKVG 279

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +  E+   +R++++   + GK ++++  ++   G+ +     V                
Sbjct: 280 MLSGEIAQDKRLKMLDQFKQGKNNIMIATDVAGRGIHVDGVSHVINF-----TLPEQSDD 334

Query: 671 LIQTIGRAARNVNSKVILYADTITKS 696
            +  IGR  R     V +   +   +
Sbjct: 335 YVHRIGRTGRAGAQGVSISFLSEDDA 360


>gi|294900399|ref|XP_002776976.1| helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239884323|gb|EER08792.1| helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 181

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G +I++   TKR A+DLT  L         +H + K  ER  ++++ + GK  +++  ++
Sbjct: 3   GSKIVIFTDTKRAADDLTRMLRMDGWPALSIHGDKKQEERDWVLQEFKSGKSPIMIATDV 62

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
              GLD+ +   V   D     F       +  IGR  R           T  K
Sbjct: 63  ASRGLDVKDLRHVINYD-----FPGQIEDYVHRIGRTGRAGAKGSAYSFFTPDK 111


>gi|224127806|ref|XP_002329182.1| predicted protein [Populus trichocarpa]
 gi|222870963|gb|EEF08094.1| predicted protein [Populus trichocarpa]
          Length = 531

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +L+ V +   AE+L   L   +IRV  +HS +   +R  +I D R GK  VL+  ++L  
Sbjct: 377 MLIFVQSIERAEELYGELKFDSIRVGVIHSNLSQEQRESVIDDFRAGKTWVLIATDVLGR 436

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
           G+D      V   D     F     S I  IGR+ R       I +           I
Sbjct: 437 GMDFKGVKCVINYD-----FPDCAASYIHRIGRSGRAGRIGEAITFYTEHDIPYLRNI 489


>gi|163803377|ref|ZP_02197253.1| ATP-dependent RNA helicase SrmB [Vibrio sp. AND4]
 gi|159172839|gb|EDP57681.1| ATP-dependent RNA helicase SrmB [Vibrio sp. AND4]
          Length = 407

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 83/242 (34%), Gaps = 27/242 (11%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           ++D        I  +   +  R     + GF  P+   +R      W   R  T++ SAT
Sbjct: 139 YIDAERFDCRAIEWLILDEADRM---LDMGFA-PTV--DRLSNECRW---RKQTLLFSAT 189

Query: 532 PGSWELEQCQGIIVEQIIRPTGL-VDPPVEIRSARTQVEDVYDEINLA--------AQQG 582
               E +  +G   + +  P  +    P+  R    Q     D+             +Q 
Sbjct: 190 ---LEGKGVEGFTADLLNEPAKIDAKSPLRERKKIAQWYHRADDAEHKLALLKHIITEQA 246

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++ + T+    +L   L    I   ++  E+    R   I   R G  +VL+  ++ 
Sbjct: 247 ERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFREGAVNVLLATDVA 306

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             G+D+P+   V   D  +     +    +  IGR AR       I   +   + +   +
Sbjct: 307 ARGIDLPDVSHVINYDMPR-----TADVYLHRIGRTARAGKKGNAISIVEAHDQPMLERV 361

Query: 702 DE 703
             
Sbjct: 362 AR 363


>gi|6807980|emb|CAB70733.1| hypothetical protein [Homo sapiens]
          Length = 399

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 69/196 (35%), Gaps = 29/196 (14%)

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 42  DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 100

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 101 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICICFYQ 155

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNIN------PQS---VKEKIMEVIDPILLEDAA 742
                         R   QL +  +K  I       P +   VK K M+ I  +     A
Sbjct: 156 P-------------RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 202

Query: 743 TTNISIDAQQLSLSKK 758
             +    + Q  + +K
Sbjct: 203 AVDFFRPSAQRLIEEK 218


>gi|20092752|ref|NP_618827.1| ATP-dependent RNA helicase [Methanosarcina acetivorans C2A]
 gi|19918045|gb|AAM07307.1| ATP-dependent RNA helicase [Methanosarcina acetivorans C2A]
          Length = 555

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 83/254 (32%), Gaps = 33/254 (12%)

Query: 523 PTTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
              +  SAT   P    +++         I    L     E      Q  D ++ ++   
Sbjct: 180 KRMLFFSATMPKPILGIVKKYMQNYEHVTIEKEELAAKLTEQIYFEVQENDKFEALSRII 239

Query: 580 QQGLRI--LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                   L+   TK     L + L +R      +H ++   ER +I+   R  K +VLV
Sbjct: 240 DIEDEFYGLVFCRTKTDTGQLAQKLSDRGYEADALHGDLSQQEREKILNKFRKQKINVLV 299

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   G+DI +   V           +   S +  IGR  R       +   T     
Sbjct: 300 ATDVAARGIDIMDLTHVINYS-----LPQDPESYVHRIGRTGRAGKQGTAITFVTS---- 350

Query: 698 QLAIDETTRRR----EKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ- 752
                 T  RR    +K  +   K    P     +I +VI        A    +I  ++ 
Sbjct: 351 ------TEFRRLTYIKKTSKSEMKKGRIP-----EIKDVIKAKRARVKAELEETIKTEEY 399

Query: 753 ---LSLSKKKGKAH 763
              L +S++  + +
Sbjct: 400 GDCLEMSERLLEEY 413


>gi|32475237|ref|NP_868231.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
 gi|32445778|emb|CAD78509.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
          Length = 931

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 90/254 (35%), Gaps = 13/254 (5%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
              + SAT   P     ++         I+   +    V  R+      D  D +    +
Sbjct: 480 QVALFSATLPKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVSPRDKIDALTRILE 539

Query: 581 QGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                 +++   TK     + E L ++      ++ ++    R   I  L+ G+ DVLV 
Sbjct: 540 VEETDGVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVA 599

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLD+P    V   D           S +  IGR  R   S   I++     +  
Sbjct: 600 TDVAARGLDVPRISHVFNFD-----LPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQ 654

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
              I+ TT++  + ++     +IN   V+    + I  +  +   T    + AQ    S 
Sbjct: 655 LRFIENTTKQPIEIIDIPTVADINEARVRR-FKQRITDVSADQDLTVYKDMIAQYAEESG 713

Query: 758 KKGKAHLKSLRKQM 771
           K  +    +L  +M
Sbjct: 714 KPMEMIAAAL-AEM 726


>gi|308504808|ref|XP_003114587.1| hypothetical protein CRE_28204 [Caenorhabditis remanei]
 gi|308258769|gb|EFP02722.1| hypothetical protein CRE_28204 [Caenorhabditis remanei]
          Length = 631

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 73/207 (35%), Gaps = 17/207 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D     F  +   R  T++ SAT         +  +V+ I+   G  
Sbjct: 358 RMLDMGFE-----DEIKSIFYFFKAQR-QTLLFSATMPKKIQFFAKSALVQPIVVNVGRA 411

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               ++   E+   R++   +   +    +   ++L+    K   +++ EYL  + + V 
Sbjct: 412 GAASLNVLQELEFVRSE-NKLVRVLECLQKTSPKVLIFAEKKVDVDNIYEYLLVKGVEVA 470

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      +R   I   R  + DVLV  ++  +GLD      V   D           +
Sbjct: 471 SIHGGKDQSDRHAGIEAFRKNEKDVLVATDVASKGLDFQGIEHVINFD-----MPEDIEN 525

Query: 671 LIQTIGRAARNVNSKVILYADTITKSI 697
            +  IGR  R+    +          +
Sbjct: 526 YVHRIGRTGRSGRKGLATTFINKKSEM 552


>gi|148706200|gb|EDL38147.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Mus musculus]
          Length = 639

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
           ++  A  +    L+ V TK+ A+ L  +L++       +H +    +R E +   R G+ 
Sbjct: 413 DLLNATGKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRK 472

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 473 PILVATAVAARGLDISNVKHVINFD-----LPSDIEEYVHRIGRTGRVGNLG 519


>gi|157962744|ref|YP_001502778.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847744|gb|ABV88243.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 468

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 81/241 (33%), Gaps = 15/241 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVED--VYDEINLAAQ 580
            +++ SAT      E  +  I   I I  T   D   +I      V+       ++   Q
Sbjct: 180 QSLLFSATLSRQVKELARATITRPIEISVTHNTDNKPKIEQWLVTVDKDKKSALLSHLIQ 239

Query: 581 QG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +    + L+ + TK+ A  L   L +R I    +H       R +I+ D + GK  +L+ 
Sbjct: 240 ENNWQQALIFIETKQGAAKLVSQLEKRGITAECIHGGRSQEIREQILADFKSGKIGLLIA 299

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
             +   GLDI E  LV   D             I  IGR  R   +   +   +      
Sbjct: 300 TGIAARGLDIDELPLVINYD-----LPYPADEYIHRIGRTGRAGANGEAVALVSKDDFKN 354

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
           L + ET  R    +E  +     P+   +++   I     +    T             +
Sbjct: 355 LCMIET--RLGHLIERREIEGFAPR---KEVPISILNFKPKSKQITGADSKPTSDKKPAR 409

Query: 759 K 759
            
Sbjct: 410 D 410


>gi|117645818|emb|CAL38376.1| hypothetical protein [synthetic construct]
 gi|208967747|dbj|BAG72519.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [synthetic construct]
          Length = 648

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 82/211 (38%), Gaps = 26/211 (12%)

Query: 496 TLAEYGF---RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
            + + GF    +   +D RP R          T++ SAT         Q  + E +I   
Sbjct: 400 KMLDMGFEPQIMKILLDVRPDR---------QTVMTSATWPHSVHRLAQSYLKEPMIVYV 450

Query: 553 GLVDPP--------VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           G +D          + + +   +   +   +   +    ++++ V  K +A+ L+  L  
Sbjct: 451 GTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTD-KVIVFVSRKAVADHLSSDLIL 509

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            NI V  +H + +  +R + + + + GK  +L+  +L   GLD+ +   V   D     F
Sbjct: 510 GNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFD-----F 564

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            R+    +  IGR  R   + V +   T   
Sbjct: 565 PRNIEEYVHRIGRTGRAGRTGVSITTLTRND 595


>gi|296450396|ref|ZP_06892152.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP08]
 gi|296879481|ref|ZP_06903475.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP07]
 gi|296260657|gb|EFH07496.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP08]
 gi|296429627|gb|EFH15480.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP07]
          Length = 497

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 19/211 (9%)

Query: 567 QVEDVYDEINLA-----------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615
           Q++D   + N             ++    +++   TK     L   + +    +R +H++
Sbjct: 219 QIDDKIIKTNEREKYILLKELIYSENPKSVIIFCNTKEKVSKLYNKMSKEGFLIRELHAD 278

Query: 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTI 675
           +    RI +I+D +  KF+VLV  ++   G+ I +  LV   D       + K + I  I
Sbjct: 279 LSQERRIFVIKDFKKQKFNVLVSSDVASRGIHIDDISLVINYDV-----PQDKENYIHRI 333

Query: 676 GRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKH-NINPQSV--KEKIMEV 732
           GR  R  NS   +   T      +   ET    +     + +   I    +  +E   E+
Sbjct: 334 GRTGRKRNSGKAITIVTEKDEKYIENIETYIGYKINELKDIEKSRITHGKILFEEYSKEI 393

Query: 733 IDPILLEDAATTNISIDAQQLSLSKKKGKAH 763
           +  +     A  N          ++ +    
Sbjct: 394 LKEVSKRKKADKNSYKGKDIKLNTESEVVKL 424


>gi|317052319|ref|YP_004113435.1| DEAD/DEAH box helicase domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316947403|gb|ADU66879.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
           S5]
          Length = 457

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 65/192 (33%), Gaps = 15/192 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI-------IRPTGLVDPPVEIRSARTQVEDVYDEIN 576
             ++ SAT      E     + + +             VD  V +     + E +   I+
Sbjct: 180 QNLLFSATFSREITELASSFMKDPVQVEVARRNTAAETVDQVVHLVDRERKRELLSKLIS 239

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               +  ++L+   TK  A  L + L +  I    +H       R + + D + G+  VL
Sbjct: 240 E--GKWQQVLVFTRTKHGANRLAQQLEKDGIHSAAIHGNKSQSARTKALADFKKGQVRVL 297

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITK 695
           V  ++   GLDI E   V   +             +  IGR  R  N  K         K
Sbjct: 298 VATDIAARGLDIDELPHVVNFE-----LPNVPEDYVHRIGRTGRAGNCGKACSLVCVDEK 352

Query: 696 SIQLAIDETTRR 707
            +   I+   +R
Sbjct: 353 QLLKGIEGLLKR 364


>gi|284007123|emb|CBA72399.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
          Length = 438

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 95/270 (35%), Gaps = 50/270 (18%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         V ++ V++ Q+  +   +  R     + GF      D R  R  
Sbjct: 138 TPGRLLD--------LVQQNAVSLSQVEILVLDEADRM---LDMGFI----HDIR--RIL 180

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS---ARTQVEDVYD 573
           +    +   ++ SAT             ++Q+          +E+     A  QV+ +  
Sbjct: 181 DKLPTKRQNLLFSAT---------FSNQIKQLANSLLHNPTILEVAPRNSASQQVKQLIH 231

Query: 574 EINLAAQQGL-----------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            ++   +  L           ++L+   TK  A  LTE+L +  I+   +H       R 
Sbjct: 232 FVDKRRKAELLSYLIGSENWQQVLVFTRTKYGANRLTEHLIKDGIKAMAIHGNKSQGART 291

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             + D + G   VLV  ++   GLDI +   V   +             +  IGR  R  
Sbjct: 292 RALADFKSGAIRVLVATDIAARGLDIEQLPYVVNYE-----LPNVAEDYVHRIGRTGRAA 346

Query: 683 NSKVILYADTITK-SIQLAIDETTRRREKQ 711
            + + +    I + S+  AI+    R  KQ
Sbjct: 347 ATGLAVSLVAIDEQSLLTAIE----RLLKQ 372


>gi|254787708|ref|YP_003075137.1| DEAD/DEAH box helicase [Teredinibacter turnerae T7901]
 gi|237686799|gb|ACR14063.1| DEAD/DEAH box helicase [Teredinibacter turnerae T7901]
          Length = 426

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 15/195 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI---IRP----TGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT     L   +  + E +   I P    T  V+  + + S   ++  + + I+
Sbjct: 226 QTLLFSATFSDDVLRLAESWMFEPVSVEIEPETVATDSVEQFIYMVSGDEKLPLLCNLIS 285

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +   +   +++    +     L E L ++  +V  +  E+   +R++ +   + G    L
Sbjct: 286 MPDVKN--VMIFANRRDQCRTLYERLRKQGYKVGLLSGEIPQGKRVKTLEAFKEGSLQAL 343

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   G+ I     V      +E         +  IGR  R  N+   I +A     
Sbjct: 344 VATDVAGRGIHIDGVSHVVNYTLPEE-----PEDYVHRIGRTGRAGNTGQSISFACEDDA 398

Query: 696 SIQLAIDETTRRREK 710
               AI+E   R+ K
Sbjct: 399 FRLPAIEELLGRKLK 413


>gi|228942602|ref|ZP_04105134.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228982168|ref|ZP_04142457.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis Bt407]
 gi|228777520|gb|EEM25798.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis Bt407]
 gi|228817028|gb|EEM63121.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326943251|gb|AEA19147.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 481

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 67/185 (36%), Gaps = 11/185 (5%)

Query: 525 TIVVSAT-PGSWE-LEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINL--AA 579
           T++ SAT P   E L +        I I+  G+    +E        ++    +      
Sbjct: 180 TMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTI 239

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +     ++   T+   + +   L   N     +H  +   +R E++ D R GKF  LV  
Sbjct: 240 ENPDSCIIFCRTQENVDHVYRQLNRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQ 698
           ++   G+DI     V   D   E     K S +   GR  R  NS K I +         
Sbjct: 300 DVAARGIDIDNITHVINYDIPLE-----KESYVHRTGRTGRAGNSGKAITFITPYENRFL 354

Query: 699 LAIDE 703
             I+E
Sbjct: 355 EEIEE 359


>gi|154492527|ref|ZP_02032153.1| hypothetical protein PARMER_02161 [Parabacteroides merdae ATCC
           43184]
 gi|154087752|gb|EDN86797.1| hypothetical protein PARMER_02161 [Parabacteroides merdae ATCC
           43184]
          Length = 419

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 30/190 (15%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            +  ++  SAT    E+E+  G I+ +           VE+    + V D  D+     +
Sbjct: 178 RKRQSLFFSAT-MPPEIERLAGTILHEP--------EKVEVTPVSSTV-DTIDQSVYFVE 227

Query: 581 QGLR---------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           +  +               +L+   TK  A+ +   L +  I    +H       R   +
Sbjct: 228 KVEKINLLKNLLEDRSLESVLVFTRTKHGADKVARVLNKSGIGAEAIHGNKGQSARQRAL 287

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              +     VL+  ++   G+D+     V   D           + +  IGR  R   S 
Sbjct: 288 SSFKDHTLRVLIATDIASRGIDVDHLSHVINYD-----LPNVPETYVHRIGRTGRAGRSG 342

Query: 686 VILYADTITK 695
           +      + +
Sbjct: 343 IAFSFCDVEE 352


>gi|189425609|ref|YP_001952786.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189421868|gb|ACD96266.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 430

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 5/116 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR A+ L   LY+R +    +H ++    R   + +LR GK   LV  ++  
Sbjct: 245 QAIIFSATKRDADTLARDLYDRGLSAAALHGDMTQGARTRTLTNLRRGKVRFLVATDVAA 304

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
            GLDI     V   D       R+    +  IGR  R   + V +   +   ++ L
Sbjct: 305 RGLDINGISHVINFD-----LPRAAEDYVHRIGRTGRAGATGVAISFVSPADAVYL 355


>gi|323499382|ref|ZP_08104358.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323315567|gb|EGA68602.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 477

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 65/207 (31%), Gaps = 36/207 (17%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-----RSARTQVEDVYDEIN 576
           +   ++ SAT      E  +           GLV+ PVE+      S    +E      +
Sbjct: 178 KRQNLLFSATFSPEIRELAK-----------GLVNDPVEVSVSKENSTAVTIEQSIYPAD 226

Query: 577 LAAQQGL-----------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
              +  +           + L+   TK  A  L  +L +  I    +H       R   +
Sbjct: 227 KRKKAPMLVKMIKDGDWKQTLVFCRTKHGANRLAFFLNKEGITAAPIHGNKSQGARTRAL 286

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            D + G   VLV  ++   G+DIP+   V   +             +  IGR  R     
Sbjct: 287 ADFKSGDVKVLVATDIAARGIDIPQLPQVVNFE-----LPNVSEDYVHRIGRTGRAGEVG 341

Query: 686 VILYADTITKSIQLAIDETTRRREKQL 712
                    ++ +L   E    R  Q 
Sbjct: 342 KAYSLVEAAEASELFGIE----RLIQQ 364


>gi|303283946|ref|XP_003061264.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457615|gb|EEH54914.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 809

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 103/259 (39%), Gaps = 18/259 (6%)

Query: 522 RPTTIVVSATP-------GSWELEQCQGIIVEQIIRPTGLVDPPV-EIRSARTQVEDVYD 573
           R  T++ SAT          + ++    +  +QI    G +   V  +R     +++ + 
Sbjct: 356 RRQTMLFSATLTSGVQELAEFSMKHPARLSADQIGTTPGTLTEEVLRLRPGAASMKEAHL 415

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
              +      + ++   TK+ A  L   +    I    +H ++   +R+  +   R+G+ 
Sbjct: 416 MALVNRTFTKKSIVFSRTKQQAHRLKIVMGLAGIVAAELHGDLSQTQRLAALESFRVGEA 475

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
             LV  ++   GLDI     V   DA +     +  S +  +GR AR       L    +
Sbjct: 476 SHLVATDVAARGLDIAGVDAVISYDAPR-----TLASYLHRVGRTARAGKRGTALTF--M 528

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQ--SVKEKIMEVIDPILLEDAATTNISIDAQ 751
            +S +  +   ++R  K +  +  +++  +  +  E + + I  +  E+ A  +++  A+
Sbjct: 529 EESDRKLVKAVSKRGSKLVARSLPNHVVEEWHAKIEAMADQIKEVEYEERAEKHLN-RAE 587

Query: 752 QLSLSKKKGKAHLKSLRKQ 770
             ++  +    H K +  +
Sbjct: 588 MEAIKAENLMTHSKEIHAR 606


>gi|195123476|ref|XP_002006232.1| GI18677 [Drosophila mojavensis]
 gi|193911300|gb|EDW10167.1| GI18677 [Drosophila mojavensis]
          Length = 787

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 97/262 (37%), Gaps = 31/262 (11%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIR-SARTQVE 569
           C    T++ SAT  S +++    + +++ ++            L    + IR       E
Sbjct: 333 CKTRQTMLFSAT-MSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDRE 391

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   +          ++ V TK+ A  L   L    +R   +H  +   +R+E ++  +
Sbjct: 392 PILASLICRTFHDH-CMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFK 450

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
             + DVL+  ++   GLDI     V            +    I  +GR AR   + +   
Sbjct: 451 EEQIDVLIATDVAARGLDIVGVKTVINF-----VMPITTEHYIHRVGRTARAGRAGI--- 502

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK----HNINPQSVKEKIMEVIDPILLEDAATTN 745
                 S+ LA  E  R+  K +  N +    + I P  + EK    +  +  E     +
Sbjct: 503 ------SVSLA-GEKERKIVKDIIKNAESSVKNRIIPPEIIEKYRNKLTALEPEIQNILD 555

Query: 746 ISIDAQQLSLSKKKGKAHLKSL 767
                +QL+ ++++     + L
Sbjct: 556 EEQAERQLAKTEQQLSKTERKL 577


>gi|193784152|dbj|BAG53696.1| unnamed protein product [Homo sapiens]
          Length = 484

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +LL V  K  AE+L   L +    +  +H ++   ER ++I D +     VLV  ++   
Sbjct: 47  VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 106

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           GLDIP    V   D  ++    +       IGR  R     V     T   S
Sbjct: 107 GLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKDS 153


>gi|225439904|ref|XP_002279705.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 524

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 5/111 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           ILL V +K  A++L   L   +IRV  +H+++   +R   + D R GK  VL+  +++  
Sbjct: 370 ILLFVQSKERAKELYTELAFDDIRVDVIHADLSQSQRENAVDDFRAGKTWVLIATDVIAR 429

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           G+D      V   D     F  S  + I  IGR+ R   +   +   T   
Sbjct: 430 GMDFKGINCVINYD-----FPDSPAAYIHRIGRSGRAGRTGEAITIYTEDD 475


>gi|222054409|ref|YP_002536771.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221563698|gb|ACM19670.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 451

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 67/179 (37%), Gaps = 13/179 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIR-SARTQVEDVYDEINLA 578
            T++ +AT     + +    +++  +R       +    +E R      ++     +   
Sbjct: 180 QTLLFTAT-MDDVMAKLAQRLLKDPVRIEIAGKKMTHEQIEQRLHVADNLQHKTRMLQHL 238

Query: 579 AQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              G   + ++   TKR A+ L   L+ +      +H ++    R + I ++R GK  +L
Sbjct: 239 IADGTVTKAIIFSATKRDADLLARDLHAQGHAAAALHGDMSQNARNKTIHNMRRGKIRLL 298

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           V  ++   GLD+     V   D  K          +  IGR  R   + + +   ++  
Sbjct: 299 VATDVAARGLDVTGISHVINFDLPKF-----AEDYVHRIGRTGRAGATGIAISFASLND 352


>gi|34557821|ref|NP_907636.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Wolinella
           succinogenes DSM 1740]
 gi|34483539|emb|CAE10536.1| ATP-DEPENDENT RNA HELICASE, DEAD-BOX FAMILY DEAD [Wolinella
           succinogenes]
          Length = 505

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 11/189 (5%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPT--GLVDPPVEIRSARTQVEDVYDEINLAA- 579
            T++ SAT P   +    + +   ++++ T     +  +  R       +  D I     
Sbjct: 188 QTLLFSATMPAPIKNLAQKILHNPKMVKVTTNETTNSDISQRYYIINEYEREDAIVRLID 247

Query: 580 -QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +   + ++    K+ A+DL+  L  +  +   +H +++  ER   +   + G  D+LV 
Sbjct: 248 SEAPSKTIIFTRMKKEADDLSNRLIAKGYQAGALHGDMEQRERQAAVNAFKQGAIDILVA 307

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSI 697
            ++   GLDI     V            +  S +  IGR  R     + I  A  +    
Sbjct: 308 TDVAARGLDISNVSHVFNYH-----IPLNPESYVHRIGRTGRAGKKGIAITLATPLEFKE 362

Query: 698 QLAIDETTR 706
              I ETT+
Sbjct: 363 IRRISETTK 371


>gi|257068572|ref|YP_003154827.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
 gi|256559390|gb|ACU85237.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
          Length = 669

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           A       ++ V T+  AE++   L  R +    +  +V   ER +I+  LR G   VLV
Sbjct: 319 ATSDAEAAIVFVRTRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVLV 378

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLD+   GLV   D  KE       S +  IGR  R   S   + +     + 
Sbjct: 379 ATDVAARGLDVERIGLVVNFDVPKE-----AESYVHRIGRTGRAGRSGEALTFIGPHERR 433

Query: 697 IQLAIDETTRR 707
               I+  T++
Sbjct: 434 ALKNIERATKQ 444


>gi|222352149|ref|NP_061135.2| probable ATP-dependent RNA helicase DDX43 [Homo sapiens]
 gi|145559466|sp|Q9NXZ2|DDX43_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX43; AltName:
           Full=Cancer/testis antigen 13; Short=CT13; AltName:
           Full=DEAD box protein 43; AltName: Full=DEAD box protein
           HAGE; AltName: Full=Helical antigen
          Length = 648

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 82/211 (38%), Gaps = 26/211 (12%)

Query: 496 TLAEYGF---RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
            + + GF    +   +D RP R          T++ SAT         Q  + E +I   
Sbjct: 400 KMLDMGFEPQIMKILLDVRPDR---------QTVMTSATWPHSVHRLAQSYLKEPMIVYV 450

Query: 553 GLVDPP--------VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           G +D          + + +   +   +   +   +    ++++ V  K +A+ L+  L  
Sbjct: 451 GTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTD-KVIVFVSRKAVADHLSSDLIL 509

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            NI V  +H + +  +R + + + + GK  +L+  +L   GLD+ +   V   D     F
Sbjct: 510 GNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFD-----F 564

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            R+    +  IGR  R   + V +   T   
Sbjct: 565 PRNIEEYVHRIGRTGRAGRTGVSITTLTRND 595


>gi|146161285|ref|XP_977099.2| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila]
 gi|146146797|gb|EAR86377.2| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila SB210]
          Length = 440

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 15/194 (7%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G+ +++ V   R    +   L +       +HS +K  +RI  ++  +    ++LV  +
Sbjct: 246 KGISMIIFVNKCRTCHFINALLNQLEFSSTSLHSGLKQGQRISHLKTFKSQAANILVATD 305

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-----YADTITK 695
           +   GLDIP   LV   D  K     +    I  +GR AR     + +     Y   +  
Sbjct: 306 VASRGLDIPTVDLVINYDIPK-----NSDDYIHRVGRTARKGKRGLAISIMTQYDVQLIL 360

Query: 696 SIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSL 755
           +I+  I E     E +++  +   I P+    K  + +   + ED ++ N     +Q   
Sbjct: 361 NIEKNIGEKLE--ELKVDEEEALEIAPK--VNKAKKFVKIKMSEDGSSENFD-KQEQDKK 415

Query: 756 SKKKGKAHLKSLRK 769
           S K+     K L+K
Sbjct: 416 SYKEFIREQKKLKK 429


>gi|71281612|ref|YP_268332.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71147352|gb|AAZ27825.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 455

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 93/267 (34%), Gaps = 40/267 (14%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
             +  T++ SAT            +  Q+++    +    E  +   +++     +    
Sbjct: 194 KHKHQTLMFSAT-----FSDRVKSLANQLLKSPKTISVSKE-NTTSGKIKQAVYWVTEER 247

Query: 580 QQGL-----------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           ++ L           ++L+   TK  A  L + L    I+    H +     R + +   
Sbjct: 248 KRELLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQF 307

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VI 687
             GK  VLV  ++   GLDIP+   V         FL      +  +GR  R   S   I
Sbjct: 308 SEGKVRVLVATDVAARGLDIPDLAFVVNFHLP---FLP--EDYVHRVGRTGRAGKSGTAI 362

Query: 688 LYADTITKSIQLAIDETTRRREKQL-----EHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
                  +     I++   R+ +++     E N+           +  E  +  +  D+ 
Sbjct: 363 SLVSPKDERFLENIEQLIERKFERIVAPGYEFNRL----------EASEYQEATVKRDSK 412

Query: 743 TTNISIDAQQLSLSKKKGKAHLKSLRK 769
               +   +  +L+KK  K  +KSL K
Sbjct: 413 NRYRAAQEKNQNLAKKDVK--IKSLSK 437


>gi|320162646|gb|EFW39545.1| ATP-dependent RNA helicase DRS1 [Capsaspora owczarzaki ATCC 30864]
          Length = 924

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 95/263 (36%), Gaps = 35/263 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
            T++ SAT  + E+E    + + + +R          T L    V +R  R + ++    
Sbjct: 521 QTMLFSAT-MTDEVENLIALSMNKPLRVFINKNTDTATNLTQEFVRVRPQREKEKEAIVL 579

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
                    + ++   +K+ A           ++   +H ++  L+R+E +   + G+ D
Sbjct: 580 AVCKRSFHTKTIVFFRSKQGAHRAKVIFGLFGLKAAELHGDLNQLQRLESLEAFKEGRVD 639

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
            L+  +L   GLDI     V   D        + T  I  +GR AR   +          
Sbjct: 640 FLLATDLASRGLDIVGVETVVNAD-----MPNTLTQYIHRVGRTARAGRAG--------- 685

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
                 + E  R+  K++    KH   P S +    +VI+      +     +       
Sbjct: 686 -RSLSLVCEGERKLLKEI---VKHATVPLSSRSIPSDVIEKF----STKIRGASKDIAAI 737

Query: 755 LSKKKGKAHLKSLRKQMHLAADN 777
           +  +K +  L  L+ +M  AA  
Sbjct: 738 MKAEKEEKML--LQAEM-EAAKA 757


>gi|302532073|ref|ZP_07284415.1| DEAD-box RNA helicase [Streptomyces sp. C]
 gi|302440968|gb|EFL12784.1| DEAD-box RNA helicase [Streptomyces sp. C]
          Length = 509

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 62/182 (34%), Gaps = 10/182 (5%)

Query: 523 PTTIVVSATPG----SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
              ++ SAT                +V  +    G V    E      Q  D        
Sbjct: 258 GQRMLFSATLDRNVDLLVRRHLADPVVHSVDPSQGAVTTR-EHHVLHVQGADKQRMTTEI 316

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A +  R+++ + TK   + LT+ L +  +R   +H      +R   +   + G   VLV 
Sbjct: 317 AARDGRVIMFLDTKHAVDRLTQDLLDSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVA 376

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            N+   G+ +    LV  +D             +   GR AR   S  ++   T  +  +
Sbjct: 377 TNVAARGIHVDNLDLVVNVDP-----PTDHQDYLHRGGRTARAGESGSVVTLVTPNQHRE 431

Query: 699 LA 700
           +A
Sbjct: 432 MA 433


>gi|224086197|ref|XP_002193200.1| PREDICTED: DEAD box polypeptide 42 protein [Taeniopygia guttata]
          Length = 923

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 14/181 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-------QIIRPTGLVDPPVEIRSAR-TQVEDVYDEI 575
            T++ SAT      +  + I+++        I      V   VEI  +  ++   +   +
Sbjct: 433 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRL 492

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G  +LL V  K  AE+L   L + +  +  +H ++   ER ++I + +     +
Sbjct: 493 VEFTSSG-SVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPI 551

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDIP    V   D  ++    +       IGR  R     V     T   
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGEKGVAYTLLTPKD 606

Query: 696 S 696
           S
Sbjct: 607 S 607


>gi|194763631|ref|XP_001963936.1| GF20995 [Drosophila ananassae]
 gi|190618861|gb|EDV34385.1| GF20995 [Drosophila ananassae]
          Length = 996

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 93/260 (35%), Gaps = 43/260 (16%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++         E+  T  Q       D      + + GF         P   +
Sbjct: 377 TPGRLIDFL---------ENRNTNLQRCTYLVLDEA--DRMLDMGFE--------PQIRK 417

Query: 517 EWNCLRP--TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEI---- 561
               +RP    ++ SAT    E++   G  +   I+             +   VEI    
Sbjct: 418 IIEQIRPDRQVVMWSAT-WPKEVQALAGDFLNDYIQINIGSMSLSANHNIRQIVEICTEM 476

Query: 562 -RSART--QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
            +  R    ++++    N AA  G +I++ V TK   ED+ + +         +H +   
Sbjct: 477 EKPQRMVRLLKEIAPTTNNAANNGNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQ 536

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER  +++D R GK ++L+  ++   GLD+ +   V   D     +  S  + +  IGR 
Sbjct: 537 NERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYD-----YPNSSENYVHRIGRT 591

Query: 679 ARNVNSKVILYADTITKSIQ 698
            R           T   + Q
Sbjct: 592 GRCQQLGTAYTFFTPDNAKQ 611


>gi|189053928|dbj|BAG36435.1| unnamed protein product [Homo sapiens]
          Length = 648

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 82/211 (38%), Gaps = 26/211 (12%)

Query: 496 TLAEYGF---RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
            + + GF    +   +D RP R          T++ SAT         Q  + E +I   
Sbjct: 400 KMLDMGFEPQIMKILLDVRPDR---------QTVMTSATWPHSVHRLAQSYLKEPMIVYV 450

Query: 553 GLVDPP--------VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           G +D          + + +   +   +   +   +    ++++ V  K +A+ L+  L  
Sbjct: 451 GTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTD-KVIVFVSRKAVADHLSSDLIL 509

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            NI V  +H + +  +R + + + + GK  +L+  +L   GLD+ +   V   D     F
Sbjct: 510 GNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFD-----F 564

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            R+    +  IGR  R   + V +   T   
Sbjct: 565 PRNIEEYVHRIGRTGRAGRTGVSITTLTRND 595


>gi|281182808|ref|NP_001162410.1| probable ATP-dependent RNA helicase DDX43 [Papio anubis]
 gi|163781000|gb|ABY40781.1| DEAD box polypeptide 43 (predicted) [Papio anubis]
          Length = 648

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 83/211 (39%), Gaps = 26/211 (12%)

Query: 496 TLAEYGF---RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
            + + GF    +   +D RP R          T++ SAT         Q  + E +I   
Sbjct: 400 KMLDMGFEPQIMKILLDVRPDR---------QTVMTSATWPHSVHRLAQSYLKEPMIVYV 450

Query: 553 GLVDPP--------VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           G +D          + + +   +   ++  +   +    ++++ V  K +A+ L+  L  
Sbjct: 451 GTLDLVAVSSVKQNIIVTTEEEKWSHMHTFLQNMSSTD-KVIVFVSRKAVADHLSSDLIL 509

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            NI +  +H + +  +R + + + + GK  +L+  +L   GLD+ +   V   D     F
Sbjct: 510 GNISIESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFD-----F 564

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            R+    +  IGR  R   + V +   T   
Sbjct: 565 PRNIEEYVHRIGRTGRAGRTGVSITTLTRND 595


>gi|62898085|dbj|BAD96982.1| DDX19-like protein variant [Homo sapiens]
          Length = 478

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 76/210 (36%), Gaps = 28/210 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 268 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 321

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 322 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 381

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 382 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 440

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHN 719
                 S+ +      R    Q   NKK  
Sbjct: 441 MVDSKHSMNIL----NR---IQEHFNKKIG 463


>gi|121604377|ref|YP_981706.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120593346|gb|ABM36785.1| DEAD/DEAH box helicase domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 649

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 77/223 (34%), Gaps = 32/223 (14%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ- 580
           R  T++ SAT     ++     ++ Q  R    +D P E  ++ TQ     D +    + 
Sbjct: 275 RKQTMMFSATFAPRIMQLA-TRVMRQPQR--VEIDSPHEKHASITQSLLWADNMTHKRKL 331

Query: 581 --------QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                      + ++   T+   + L   L +       +H  +    R   +   R G+
Sbjct: 332 LDHWLRDTTINQAIVFACTQVECDGLANDLVQEGFSAVALHGALGQGLRNRRLMAFRDGR 391

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             +LV  ++   GLD+P    V        G        +  IGR  R       +    
Sbjct: 392 VQILVATDVAARGLDVPTITHVINY-----GLPMKAEDYVHRIGRTGRAGREGQAI---- 442

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDP 735
                   I E   RR+ Q   + +H    Q++K  ++  ++P
Sbjct: 443 -------TIAEFRDRRKIQ---DIEH-YTQQNLKASVIAGLEP 474


>gi|126176118|ref|YP_001052267.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS155]
 gi|217975023|ref|YP_002359774.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS223]
 gi|304412472|ref|ZP_07394078.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307307131|ref|ZP_07586869.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|189040039|sp|A3D9I5|RHLB_SHEB5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797691|sp|B8E670|RHLB_SHEB2 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|125999323|gb|ABN63398.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|217500158|gb|ACK48351.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|304349114|gb|EFM13526.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306910370|gb|EFN40801.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 438

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 77/235 (32%), Gaps = 36/235 (15%)

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542
           I  +   +  R   L   GF      D R L        +   ++ SAT      E    
Sbjct: 159 IQAVVLDEADRMFDL---GFI----KDIRFLFRRMPEANQRLNMLFSATLSMKVQELAYD 211

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG--------------LRILLT 588
            + E +          VEI       +++ +EI   +Q+                + ++ 
Sbjct: 212 HMNEPV---------KVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIEEDWPEKAIVF 262

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
             TK   E L  +L     RV  +  +V   +RI I+     G+ D+LV  ++   GL I
Sbjct: 263 SNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHI 322

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAID 702
            +   V   D             +  IGR  R  N    I +A         AI+
Sbjct: 323 SDVSHVYNYD-----LPDDCEDYVHRIGRTGRAGNKGMSISFACEEYALNLPAIE 372


>gi|302333727|gb|ADL23920.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 506

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 15/193 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTG--LVDPPVE----IRSARTQVEDVYDEIN 576
            T++ SAT P + +    Q +   +II+     + DP +E    I     + +   + ++
Sbjct: 177 QTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLD 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++L
Sbjct: 237 --VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINIL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLDI     V   D       +   S    IGR  R     + + + + I  
Sbjct: 295 VATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349

Query: 696 SIQLAIDETTRRR 708
                I++   R+
Sbjct: 350 DYIRQIEDANGRK 362


>gi|148906006|gb|ABR16163.1| unknown [Picea sitchensis]
          Length = 477

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 5/127 (3%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  D R G    LV  +L   G
Sbjct: 344 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVCSDLFTRG 403

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +DI    +V   D     F ++  + +  +GR+ R  +  + +   T      L   E  
Sbjct: 404 IDIQAVNVVINFD-----FPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYKIEQE 458

Query: 706 RRREKQL 712
              E Q 
Sbjct: 459 LGTEIQQ 465


>gi|149038195|gb|EDL92555.1| rCG51157 [Rattus norvegicus]
          Length = 218

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 8   QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNREEKFQ 61

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 62  ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 121

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 122 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 180

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 181 MVDSKHSMNIL----NR---IQEHFNKK 201


>gi|118344314|ref|NP_001071981.1| zinc finger protein [Ciona intestinalis]
 gi|92081542|dbj|BAE93318.1| zinc finger protein [Ciona intestinalis]
          Length = 627

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 91/259 (35%), Gaps = 32/259 (12%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      D R + F  +   R  T++ SAT         +  +V  +    G  
Sbjct: 353 RMIDMGFE----EDVRTI-FSYFKGQR-QTLLFSATMPKKIQNFARSALVCPVTVNVGRA 406

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + V   +N   +    +L+    K+  +D+ EYL  + +   
Sbjct: 407 GAASLDIIQEVEYVKDEAK-VVHLLNCLQKTSPPVLVFAQKKKDVDDIHEYLLLKGVEAV 465

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER   +   R  + DVLV  ++  +GLD      V   D           +
Sbjct: 466 AIHGGKDQEERSRAVDLFRTREKDVLVATDIASKGLDFEGIKHVLNYD-----MPDDIEN 520

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIM 730
            +  IGR  R+  + +       +      +D     R   +E            K+KI 
Sbjct: 521 YVHRIGRTGRSGCTGIATTFINKSCDSSTLLDL----RALLIE-----------AKQKIP 565

Query: 731 EVIDPILLEDAATTNISID 749
           E+++ +   +     +  +
Sbjct: 566 EILEQLGPAEENFMELGGE 584


>gi|15668850|ref|NP_247653.1| DEAD-box ATP dependent DNA helicase [Methanocaldococcus jannaschii
           DSM 2661]
 gi|2500540|sp|Q58083|H669_METJA RecName: Full=Probable ATP-dependent RNA helicase MJ0669
 gi|1591383|gb|AAB98663.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 367

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 18/129 (13%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+   TKR  ++L   L +   +   +H ++   +R ++IR  +  K  +L+  +++  G
Sbjct: 242 LVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRG 301

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +D+ +   V           ++  S +  IGR  R                   AI    
Sbjct: 302 IDVNDLNCVINYH-----LPQNPESYMHRIGRTGRAGKKG-------------KAISIIN 343

Query: 706 RRREKQLEH 714
           RR  K+L +
Sbjct: 344 RREYKKLRY 352


>gi|164429479|ref|XP_955826.2| hypothetical protein NCU04354 [Neurospora crassa OR74A]
 gi|157073493|gb|EAA26590.2| hypothetical protein NCU04354 [Neurospora crassa OR74A]
          Length = 642

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 6/136 (4%)

Query: 570 DVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           D+      A     +  L+  +      D+T          R++ S+    ER +I+   
Sbjct: 247 DIAVRTWYAKAGNRKSTLVFCVDLAHVADMTATFRRYGYDARFVTSDTPAKERADILDAF 306

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +  +F VLV   +  EG DIP    + +    K     S+  LIQ IGR  R    K   
Sbjct: 307 KRFEFPVLVNCGVFTEGTDIPNIDCILMARPTK-----SRNLLIQMIGRGMRLYPGKENC 361

Query: 689 YADTITKSIQLAIDET 704
           +   +  S+   I  T
Sbjct: 362 HIIDMVSSLATGIVTT 377



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 6/77 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ------RPAIVMAPNKILA 206
           Q   I  +L  I+   K   +   TG+GKT     +I+ ++         +++A  + L 
Sbjct: 22  QEECIQSVLAAINQGHKRLGVSLATGAGKTVIFTHLIDRIEPRSDNATQTLIIAHRRELV 81

Query: 207 AQLYSEFKNFFPHNAVE 223
            Q      N +PH  VE
Sbjct: 82  EQAARHCANTYPHKTVE 98


>gi|154688021|ref|YP_001423182.1| DbpA [Bacillus amyloliquefaciens FZB42]
 gi|154353872|gb|ABS75951.1| DbpA [Bacillus amyloliquefaciens FZB42]
          Length = 479

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 85/248 (34%), Gaps = 24/248 (9%)

Query: 525 TIVVSAT-PGSWE-LEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA--A 579
           T++ SAT P   E L +      E I ++  GL    +E    RT+ ED    +      
Sbjct: 178 TMLFSATLPDDVEKLSRTYMKDPELIEVKAEGLTTKDIEHFVTRTEEEDKTSLLRDVLIT 237

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +     ++   TK     LT+ L         +H  +   +R +++ + + G+F  L+  
Sbjct: 238 ENPDSCIIFCRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIAT 297

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           ++   G+DI    LV   D   E     K S +   GR  R  +    +   T  ++  L
Sbjct: 298 DVAARGIDIENISLVINYDIPLE-----KESYVHRTGRTGRAGHRGRAITFVTPFEARFL 352

Query: 700 AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
              ET      Q              K +     +    + A    ++      +   ++
Sbjct: 353 NDIETYIGFRIQ--------------KREAPSEKETAERKAAFAEKLNARPDVKTDKSEQ 398

Query: 760 GKAHLKSL 767
               +  L
Sbjct: 399 LNKDIMKL 406


>gi|119502760|ref|ZP_01624845.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
 gi|119461106|gb|EAW42196.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
          Length = 582

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 73/191 (38%), Gaps = 30/191 (15%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   T+     + E L +  ++   ++ ++    R+  + DL+ G  DVLV  ++   
Sbjct: 251 VIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVSDLKSGALDVLVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLAIDE 703
           GLD+     V   D   +     + + +  IGR  R     K IL+     + +   I+ 
Sbjct: 311 GLDVERITHVINYDVPFD-----EEAYVHRIGRTGRAGRKGKAILFVVPRERRMLRNIER 365

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE-DAATTNISIDAQQLSLSK---KK 759
            TR                    + I E+  P +L  DA       D+ + +L+     +
Sbjct: 366 LTR--------------------QSIPEIKLPSVLAIDAKRREAFADSIRTALADPMQAE 405

Query: 760 GKAHLKSLRKQ 770
            +  + +L K 
Sbjct: 406 LEEIIDTLNKD 416


>gi|73965227|ref|XP_861717.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 9 [Canis
           familiaris]
          Length = 620

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 70/194 (36%), Gaps = 29/194 (14%)

Query: 537 LEQCQGIIVEQIIRP-TGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMA 595
           LE      + QI+     +      IR        + +EI    ++  + ++ V TKR  
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIR--------LMEEIMS--EKENKTIVFVETKRRC 354

Query: 596 EDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL------DIP 649
           ++LT  +         +H +    ER  ++ + + GK  +L+  ++   GL      ++ 
Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLAFYKLVNVE 414

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRRE 709
           +   V   D     +  S    I  IGR AR+  +       T   +I+   D       
Sbjct: 415 DVKFVINYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPN-NIKQVSD------L 462

Query: 710 KQLEHNKKHNINPQ 723
             +       INP+
Sbjct: 463 ISVLREANQAINPK 476


>gi|45219880|gb|AAH66938.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo sapiens]
          Length = 648

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 82/211 (38%), Gaps = 26/211 (12%)

Query: 496 TLAEYGF---RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
            + + GF    +   +D RP R          T++ SAT         Q  + E +I   
Sbjct: 400 KMLDMGFEPQIMKILLDVRPDR---------QTVMTSATWPHSVHRLAQSYLKEPMIVYV 450

Query: 553 GLVDPP--------VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           G +D          + + +   +   +   +   +    ++++ V  K +A+ L+  L  
Sbjct: 451 GTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTD-KVIVFVSRKAVADHLSSDLIL 509

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            NI V  +H + +  +R + + + + GK  +L+  +L   GLD+ +   V   D     F
Sbjct: 510 GNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFD-----F 564

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            R+    +  IGR  R   + V +   T   
Sbjct: 565 PRNIEEYVHRIGRTGRAGRTGVSITTLTRND 595


>gi|49065444|emb|CAG38540.1| DDX19 [Homo sapiens]
          Length = 448

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 238 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 291

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  EV   +R  +I   R G
Sbjct: 292 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEVMVEQRAAVIERFREG 351

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 352 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 410

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 411 MVDSKHSMNIL----NR---IQEHFNKK 431


>gi|317013693|gb|ADU81129.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Gambia94/24]
          Length = 491

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 34/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++        +  H  +P++  +   D      + + GF     +D+    F+
Sbjct: 144 TPGRLLDHLKN------ERIHKFVPKVVVLDESD-----EMLDMGF-----LDDIEEIFD 187

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVY 572
                    ++ SAT     +++    I+E  I+    P+ + +  +  R       +  
Sbjct: 188 YLPSEA-QILLFSAT-MPEPIKRLADKILENPIKIHIAPSNITNADITQRFYVINEHERA 245

Query: 573 DEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + I      Q   + ++   TK+ A++L ++L  +N +   +H ++   +R   I   + 
Sbjct: 246 EAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              DVLV  ++   GLDI     V            +  S I  IGR  R     + +  
Sbjct: 306 NDADVLVATDVASRGLDISGVSHVFNYH-----LPLNTESYIHRIGRTGRAGKKGMAITL 360

Query: 691 DTITK-----SIQLAID 702
            T  +      +Q  ID
Sbjct: 361 VTPLEYKELLRMQKEID 377


>gi|309809690|ref|ZP_07703546.1| putative DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
           iners SPIN 2503V10-D]
 gi|315653056|ref|ZP_07905984.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners ATCC 55195]
 gi|308170050|gb|EFO72087.1| putative DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
           iners SPIN 2503V10-D]
 gi|315489591|gb|EFU79225.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners ATCC 55195]
          Length = 421

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 19/180 (10%)

Query: 529 SAT-PGSWE------LEQCQGIIVE--QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           SAT P   E      +E  + ++++   +I PT + +  +++ S     +D+   +    
Sbjct: 190 SATIPVKLEQFLNKYMEHPEFVVIDNPSVISPT-VANDLIDVGSKNK--KDILYTLL-TM 245

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            Q     +   TK+  ++L  YL ++ ++V  +H  +   ER   IR +R G++  ++  
Sbjct: 246 GQPYLAFVFANTKKTVDELATYLDQKGLKVAKIHGGITERERKRTIRQVREGQYQYVIAS 305

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +L   G+DIP   LV   +            +I  IGR  RN N           + +Q 
Sbjct: 306 DLAARGIDIPGISLVINYE-----IPTDLEFVIHRIGRTGRN-NLYGHAITLIHEEEMQQ 359


>gi|302520727|ref|ZP_07273069.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
 gi|302429622|gb|EFL01438.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
          Length = 518

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 82/217 (37%), Gaps = 26/217 (11%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A +  R ++ V T+  A+ + E L +  ++   +H  +    R  ++ D + G  +VLV 
Sbjct: 317 ASRKGRTIIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNVLVA 376

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   G+ +    LV  +D             +   GR AR   S  ++      +   
Sbjct: 377 TDVAARGIHVDGIDLVLNVDP-----AGDHKDYLHRSGRTARAGRSGTVVSLSLPHQ--- 428

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED--AATTNISIDAQQLSLS 756
                   RR+      +   ++  + + +I   +    L +   A +   + A+    S
Sbjct: 429 --------RRQIFRLM-EDAGVD--AARHQIGSAVFDAELAEITGARSMTEVQAESAGQS 477

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
            K+ +  ++ L +++  A        A+  R E  RL
Sbjct: 478 AKQAEREVEDLTRELERAKR-----RASEYRAEADRL 509


>gi|294497529|ref|YP_003561229.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294347466|gb|ADE67795.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 481

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 69/185 (37%), Gaps = 11/185 (5%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVEDVYDEINLAA 579
           T++ SAT      E  +  + + +   I+  GL    ++  + S   + +    +     
Sbjct: 180 TMLFSATLPEDIEELSRKYMKKPVDVEIKANGLTTSTIDHSVISVENERKFELLKDVTTV 239

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +     ++   T+     L + L +       +H  +   +R E++ D + GKF  LV  
Sbjct: 240 ENPDSCIIFCRTQEQVNTLLDDLDDFGYPCDKIHGAMVQEDRFEVMNDFKKGKFRYLVAT 299

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQ 698
           ++   G+DI     V   D   E     K S +   GR  R     K I +     K + 
Sbjct: 300 DVAARGIDIDNITHVINYDLPLE-----KESYVHRTGRTGRAGKKGKAITFVTPYEKRML 354

Query: 699 LAIDE 703
             I+E
Sbjct: 355 SEIEE 359


>gi|229020923|ref|ZP_04177614.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273]
 gi|229026894|ref|ZP_04183218.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272]
 gi|228734397|gb|EEL85067.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272]
 gi|228740374|gb|EEL90681.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273]
          Length = 481

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 69/185 (37%), Gaps = 11/185 (5%)

Query: 525 TIVVSAT-PGSWE-LEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINL--AA 579
           T++ SAT P   E L +        I I+  G+    +E     T+ E+    +      
Sbjct: 180 TMLFSATLPEDVEKLSRKYMDSPTHIEIKAAGITTDKIEHTLFETREEEKLSLLKDVTTI 239

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +     ++   T+   + + + L   N     +H  +   +R E++ D R GKF  LV  
Sbjct: 240 ENPDSCIIFCRTQENVDHVFKQLDRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQ 698
           ++   G+DI     V   D   E     K S +   GR  R  N  K I +         
Sbjct: 300 DVAARGIDIDNITHVINYDIPLE-----KESYVHRTGRTGRAGNKGKAITFITPYENRFL 354

Query: 699 LAIDE 703
             I+E
Sbjct: 355 EEIEE 359


>gi|148700137|gb|EDL32084.1| mCG141508, isoform CRA_c [Mus musculus]
          Length = 689

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 87/257 (33%), Gaps = 34/257 (13%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVED----VY 572
           P T++ SAT   W  +      + +   V+ + + T      VE  + +         + 
Sbjct: 317 PQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIG 376

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D + + +    R ++   TK+   ++           + +H ++   +R   ++  R G 
Sbjct: 377 DVLQVYSGSEGRAIIFCETKKNVTEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGS 435

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV           +   S I   GR  R   + + +    
Sbjct: 436 FKVLVATNVAARGLDIPEVDLVIQSSP-----PQDVESYIHRSGRTGRAGRTGICVCFYQ 490

Query: 693 ITKSIQLAIDETTRRREKQLEH-NKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                         R   QL +  +K  I  + V   +   +D +  +            
Sbjct: 491 P-------------RERGQLRYVEQKAGITFKRVG--VPSTMDLVKSKSMDAIRSLASVS 535

Query: 752 QLSLS--KKKGKAHLKS 766
             ++   +   +  ++ 
Sbjct: 536 YAAVDFFRPSAQRLIEE 552


>gi|114644990|ref|XP_001159984.1| PREDICTED: probable ATP-dependent RNA helicase DDX23 isoform 1 [Pan
           troglodytes]
          Length = 800

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 571 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 630

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 631 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 688

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 689 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 743

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 744 AITFLTKEDSAVFYELKQAILES 766


>gi|6005743|ref|NP_009173.1| ATP-dependent RNA helicase DDX19B isoform 1 [Homo sapiens]
 gi|55644171|ref|XP_511078.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 23 [Pan
           troglodytes]
 gi|114663444|ref|XP_001170208.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 18 [Pan
           troglodytes]
 gi|114663446|ref|XP_001170248.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 19 [Pan
           troglodytes]
 gi|114663448|ref|XP_001170270.1| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 20 [Pan
           troglodytes]
 gi|10719979|sp|Q9UMR2|DD19B_HUMAN RecName: Full=ATP-dependent RNA helicase DDX19B; AltName: Full=DEAD
           box RNA helicase DEAD5; AltName: Full=DEAD box protein
           19B
 gi|237823851|pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
           With The Dead-Box Helicase Ddx19
 gi|237823853|pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
           With The Dead-Box Helicase Ddx19
 gi|5701850|emb|CAB52189.1| DEAD Box Protein 5 [Homo sapiens]
 gi|13177688|gb|AAH03626.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [Homo sapiens]
 gi|119572212|gb|EAW51827.1| hCG2043426, isoform CRA_a [Homo sapiens]
 gi|119572216|gb|EAW51831.1| hCG1998531, isoform CRA_b [Homo sapiens]
 gi|193786528|dbj|BAG51311.1| unnamed protein product [Homo sapiens]
 gi|261857900|dbj|BAI45472.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [synthetic construct]
 gi|312152434|gb|ADQ32729.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [synthetic construct]
          Length = 479

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 269 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 322

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 323 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 382

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 383 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 441

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 442 MVDSKHSMNIL----NR---IQEHFNKK 462


>gi|329297879|ref|ZP_08255215.1| ATP-dependent RNA helicase RhlB [Plautia stali symbiont]
          Length = 431

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 111/358 (31%), Gaps = 62/358 (17%)

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG+ +  + +   Y  SH       +N     I                    + L  +I
Sbjct: 57  TGKTLAFLTSTFHYLLSHPAAEGRQVNQPRALIMA----------------PTRELAVQI 100

Query: 427 TYDLEMLET-----TGSCQSIENYSRYLTGRNPGE-----PPPTLFEYIPEDSLLFVDES 476
             D E L        G     + Y + L     G          L +Y          ++
Sbjct: 101 HADAEPLAQATGLKLGLAYGGDGYEKQLKVLADGVDILVGTTGRLIDY--------AKQN 152

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLRPTTIV 527
           H+ +  I  +   +  R   L   GF         R+P       + F      R   + 
Sbjct: 153 HINLGAIQVVVLDEADRMFDL---GFIKDIRWLFRRMPPATQRLSMLFSATLSYRVRELA 209

Query: 528 VSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                 +  +E   +     +I           ++R  +T +E+         +   R +
Sbjct: 210 FEHMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLLEE---------EWPDRAI 260

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +   TK   ED+  +L     RV  ++ +V   +R+ I+ D+  G  D+LV  ++   GL
Sbjct: 261 VFANTKHRCEDIWGHLAADGHRVGLLNGDVAQKKRLRILDDVTKGDVDILVATDVAARGL 320

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAIDE 703
            IP    V   D         +   +  IGR  R   +   I  A         AI+E
Sbjct: 321 HIPAVTHVFNYD-----LPDDREDYVHRIGRTGRAGASGHSISLACEEYALNLPAIEE 373


>gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 513

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 76/210 (36%), Gaps = 12/210 (5%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSAR-TQVEDVYDEINL 577
           +   ++ SAT      +  +G++   VE  + P       VE    +  Q +     I+L
Sbjct: 200 KRQNLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATAKTVEQYIYQVDQKQKTAALIHL 259

Query: 578 AAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
             Q   + +L+   TK  A  + + L   ++    +H       R + + + + G+  VL
Sbjct: 260 IKQNDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKSGEVRVL 319

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DI +   V   D             +  IGR  R       +   +  +S
Sbjct: 320 VATDIAARGIDIDQLPNVVNFD-----LPNVPEDYVHRIGRTGRAGADGQAVSLVSGDES 374

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVK 726
               + +  R  ++++   +     P  V 
Sbjct: 375 --KLLRDIERLIKQKIPRKEVEGFVPTQVV 402


>gi|114663437|ref|XP_001169835.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 9 [Pan
           troglodytes]
 gi|119572220|gb|EAW51835.1| hCG1998531, isoform CRA_f [Homo sapiens]
          Length = 466

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 256 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 309

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 310 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 369

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 370 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 428

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 429 MVDSKHSMNIL----NR---IQEHFNKK 449


>gi|153002454|ref|YP_001368135.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS185]
 gi|160877173|ref|YP_001556489.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS195]
 gi|189040040|sp|A6WTD3|RHLB_SHEB8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040041|sp|A9L5D5|RHLB_SHEB9 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|151367072|gb|ABS10072.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160862695|gb|ABX51229.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315269377|gb|ADT96230.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 438

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 77/235 (32%), Gaps = 36/235 (15%)

Query: 483 ISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQG 542
           I  +   +  R   L   GF      D R L        +   ++ SAT      E    
Sbjct: 159 IQAVVLDEADRMFDL---GFI----KDIRFLFRRMPEANQRLNMLFSATLSMKVQELAYD 211

Query: 543 IIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQG--------------LRILLT 588
            + E +          VEI       +++ +EI   +Q+                + ++ 
Sbjct: 212 HMNEPV---------KVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIEEDWPEKAIVF 262

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
             TK   E L  +L     RV  +  +V   +RI I+     G+ D+LV  ++   GL I
Sbjct: 263 SNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHI 322

Query: 649 PECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAID 702
            +   V   D             +  IGR  R  N    I +A         AI+
Sbjct: 323 SDVSHVYNYD-----LPDDCEDYVHRIGRTGRAGNKGMSISFACEEYALNLPAIE 372


>gi|109096395|ref|XP_001104093.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like isoform 2
           [Macaca mulatta]
          Length = 800

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 571 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 630

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 631 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 688

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 689 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 743

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 744 AITFLTKEDSAVFYELKQAILES 766


>gi|162605914|ref|XP_001713472.1| RNA helicase [Guillardia theta]
 gi|6690145|gb|AAF24010.1|AF083031_7 RNA helicase [Guillardia theta]
          Length = 381

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 27/184 (14%)

Query: 518 WNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSA 564
           +       ++ SAT                 E+     +++E+I +         +I   
Sbjct: 181 YKNKISQIMLFSATFPYHIQNIKKMYMNNPIEVNLMNELVLEKISQFYAYTSENKKI--- 237

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
                     I         +     +    E L + + +      ++H++++   R +I
Sbjct: 238 -----QCIKNILSKVNINQSVF-FCNSVNRVELLAKKITDFGYPCYFIHAKMRLDIRNKI 291

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
             D R+GK  +LV  +L+  G+DIP   LV   D        S  S +  IGR  R    
Sbjct: 292 FHDFRIGKSKLLVSSDLITRGIDIPNINLVVNFD-----LPLSSESYLHRIGRTGRFGKH 346

Query: 685 KVIL 688
            + +
Sbjct: 347 GIAI 350


>gi|82751683|ref|YP_417424.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
 gi|123548216|sp|Q2YUH3|Y1965_STAAB RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAB1965c
 gi|82657214|emb|CAI81654.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
          Length = 506

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 15/193 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTG--LVDPPVE----IRSARTQVEDVYDEIN 576
            T++ SAT P + +    Q +   +II+     + DP +E    I     + +   + ++
Sbjct: 177 QTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLD 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++L
Sbjct: 237 --VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINIL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLDI     V   D       +   S    IGR  R     + + + + I  
Sbjct: 295 VATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349

Query: 696 SIQLAIDETTRRR 708
                I++   R+
Sbjct: 350 DYIRQIEDANGRK 362


>gi|295101226|emb|CBK98771.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           L2-6]
          Length = 648

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 71/206 (34%), Gaps = 32/206 (15%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           +   ++ SAT    E+EQ    I+             V++    + VE + D+     ++
Sbjct: 178 KRQNLMFSAT-MPKEIEQLAAGILHDPAF--------VKVDPVSSTVERI-DQSLYFVEK 227

Query: 582 GLR-----------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           G +                  L+   TK  A+ +   L ++ I    +H       R+  
Sbjct: 228 GNKKLLLPWLIKNLTPPVQNALVFSRTKHGADKIARDLTKQGITAAAIHGNKSQTARVAA 287

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +   + GK  VLV  ++   G+DI E   V   D           + +  IGR AR    
Sbjct: 288 LEGFKEGKTRVLVATDIAARGIDISELSHVFNYD-----LPEVPETYVHRIGRTARAGAD 342

Query: 685 KVILYADTITKSIQLAIDETTRRREK 710
              +      +   LA  E   RR+ 
Sbjct: 343 GTAVSFCAPEEMEYLAGIEKLNRRKI 368


>gi|283471297|emb|CAQ50508.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 506

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 15/193 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTG--LVDPPVE----IRSARTQVEDVYDEIN 576
            T++ SAT P + +    Q +   +II+     + DP +E    I     + +   + ++
Sbjct: 177 QTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLD 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++L
Sbjct: 237 --VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINIL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLDI     V   D       +   S    IGR  R     + + + + I  
Sbjct: 295 VATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349

Query: 696 SIQLAIDETTRRR 708
                I++   R+
Sbjct: 350 DYIRQIEDANGRK 362


>gi|257790938|ref|YP_003181544.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|257474835|gb|ACV55155.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
          Length = 414

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 68/197 (34%), Gaps = 35/197 (17%)

Query: 524 TTIVVSAT---------------PGSWELEQCQG--IIVEQIIRPTGLVDPPVEIRSART 566
            T++ SAT               P   E+         ++Q + P G +  P  +R    
Sbjct: 180 QTLLFSATLDRKVMQSVSSILKDPAFVEVSHKGETADTIDQFMIPVGPMKKPALLRLVLQ 239

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q            +   R+++   TK  AE  T  L     R   +HS+   ++R   + 
Sbjct: 240 Q------------RGSKRVIVFADTKTRAEICTGQLKRAGFRADSIHSDKTQVQRKRALE 287

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK- 685
               G  DVLV  ++L  G+D+     V   D        S    +  IGR  R   +  
Sbjct: 288 GFSKGAIDVLVATDVLARGIDVSNIEYVVNYD-----LPESPEDYVHRIGRTGRAGETGY 342

Query: 686 VILYADTITKSIQLAID 702
            I +     K+  L I+
Sbjct: 343 AISFVSPEAKAQLLDIE 359


>gi|254422154|ref|ZP_05035872.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
 gi|196189643|gb|EDX84607.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
          Length = 469

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 90/284 (31%), Gaps = 43/284 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         V +  V + Q+  +   +  R     + GF      D R +   
Sbjct: 166 TPGRLLD--------HVGQRTVDLSQVEVLVLDEADRM---LDMGFI----HDIRKILAL 210

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
                   T++ SAT       +    + +  +R    ++      +    V+ V   ++
Sbjct: 211 VSEER--QTLLFSAT-----FSKPIKKLADSFLRSPKTIE-VARQNATADTVDQVVYPVD 262

Query: 577 LAAQQGL-----------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
              +  L           ++L+   TK  A  LT++L +  +    +H       R   +
Sbjct: 263 RVRKSELLSFIIGSRNWQQVLVFTRTKHGANRLTKHLQKDGLTAAAIHGNKSQGARTRAL 322

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              +     VLV  ++   GLDI     V   +             +  IGR  R  N  
Sbjct: 323 AAFKARDVRVLVATDIAARGLDIDLLPHVVNFE-----LPNVAEDYVHRIGRTGRAGNEG 377

Query: 686 -VILYADTITKSIQLAIDETTRR---REKQLEHNKKHNINPQSV 725
             +       K +   I+   RR   RE    +    +I P+ +
Sbjct: 378 QAVSLVCVDEKDLLRGIERLLRRDIPREVIPGYEPDPSIPPEPI 421


>gi|162417900|ref|YP_001604581.1| Type III restriction enzyme, res subunit [Yersinia pestis Angola]
 gi|162350872|gb|ABX84821.1| Type III restriction enzyme, res subunit [Yersinia pestis Angola]
          Length = 519

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +  E  +    GL  +  V  KR  + L E + E  ++V +++ E     R   +  L
Sbjct: 355 EAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLSSL 414

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--V 686
             G+ DVL+G  +L  G+D+P  G V +    K     ++  + Q +GR  R   ++  V
Sbjct: 415 AAGRIDVLIGSTILDVGVDVPSVGAVILGGGGK-----AEVEMRQRVGRGLRAKKNQANV 469

Query: 687 ILYADTITKSIQLAIDETTRRREK 710
               D I  S +  +  +  R+  
Sbjct: 470 CFITDFIDVSNKYLMSHSYERKHI 493


>gi|52788081|ref|YP_093909.1| hypothetical protein pG8786_029 [Yersinia pestis]
 gi|52538010|emb|CAG27435.1| hypothetical protein [Yersinia pestis]
          Length = 519

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +  E  +    GL  +  V  KR  + L E + E  ++V +++ E     R   +  L
Sbjct: 355 EAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLSSL 414

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--V 686
             G+ DVL+G  +L  G+D+P  G V +    K     ++  + Q +GR  R   ++  V
Sbjct: 415 AAGRIDVLIGSTILDVGVDVPSVGAVILGGGGK-----AEVEMRQRVGRGLRAKKNQANV 469

Query: 687 ILYADTITKSIQLAIDETTRRREK 710
               D I  S +  +  +  R+  
Sbjct: 470 CFITDFIDVSNKYLMSHSYERKHI 493


>gi|2996312|gb|AAC13192.1| unknown [Yersinia pestis KIM 10]
          Length = 492

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +  E  +    GL  +  V  KR  + L E + E  ++V +++ E     R   +  L
Sbjct: 328 EAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLSSL 387

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--V 686
             G+ DVL+G  +L  G+D+P  G V +    K     ++  + Q +GR  R   ++  V
Sbjct: 388 AAGRIDVLIGSTILDVGVDVPSVGAVILGGGGK-----AEVEMRQRVGRGLRAKKNQANV 442

Query: 687 ILYADTITKSIQLAIDETTRRREK 710
               D I  S +  +  +  R+  
Sbjct: 443 CFITDFIDVSNKYLMSHSYERKHI 466


>gi|73996620|ref|XP_863121.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 7 [Canis familiaris]
          Length = 810

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 581 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 640

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 641 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 698

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 699 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 753

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 754 AITFLTKEDSAVFYELKQAILES 776


>gi|85060366|ref|YP_456068.1| ATP-dependent RNA helicase RhlB [Sodalis glossinidius str.
           'morsitans']
 gi|123518632|sp|Q2NQB2|RHLB_SODGM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|84780886|dbj|BAE75663.1| ATP-dependent RNA helicase [Sodalis glossinidius str. 'morsitans']
          Length = 415

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 91/293 (31%), Gaps = 61/293 (20%)

Query: 422 LEQRITYDLEMLET-----TGSCQSIENYSRYLTGRNPGE-----PPPTLFEYIPEDSLL 471
           L  +I  D E L        G     + Y + L     G          L +Y  ++ + 
Sbjct: 96  LAVQIHSDAEPLAQATGLKMGLAYGGDGYDKQLKVLEAGVDILVGTTGRLIDYTKQNYV- 154

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRF------- 515
                   +  I  +   +  R   L   GF         R+P+      + F       
Sbjct: 155 -------NMSAIQVVVLDEADRMFDL---GFIKDIRWLFRRMPAAAGRLNMLFSATLSYR 204

Query: 516 --EEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYD 573
             E           V   P    L++    I E++  P+       ++R  +T +E+   
Sbjct: 205 VRELAFEHMNNAEYVEVEP----LQKTGHRIQEELFYPSNEE----KMRLLQTLIEE--- 253

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                 +   R ++   TK   ED+  +L     RV  +  +V    R+ I+     G  
Sbjct: 254 ------EWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVSQKRRLRILEKFTQGAL 307

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D+LV  ++   GL IP    V   D             +  IGR  R   S  
Sbjct: 308 DILVATDVAARGLHIPSVTHVFNYD-----LPDDCEDYVHRIGRTGRAGESGC 355


>gi|68071941|ref|XP_677884.1| eukaryotic initiation factor [Plasmodium berghei strain ANKA]
 gi|56498165|emb|CAH98223.1| eukaryotic initiation factor, putative [Plasmodium berghei]
          Length = 390

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TK   + L + + E N  V  MH+ +   ER +I+   R  K+ VL+  ++  
Sbjct: 258 QAVVFCNTKLKVDWLAKKMQESNFTVCKMHAGMSQSERDDIMLKFRQCKYRVLISTDIWG 317

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
            GLD+ E  LV   D        S+   I  IGR+ R     V I +       I   I+
Sbjct: 318 RGLDVHEVSLVVNYD-----LPNSRECYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 372

Query: 703 E 703
           +
Sbjct: 373 Q 373


>gi|16082814|ref|NP_395368.1| hypothetical protein YPMT1.30 [Yersinia pestis CO92]
 gi|31795353|ref|NP_857805.1| hypothetical protein Y1022 [Yersinia pestis KIM]
 gi|40787954|ref|NP_857667.2| hypothetical protein YPKMT029 [Yersinia pestis KIM]
 gi|45478621|ref|NP_995477.1| hypothetical protein YP_pMT033 [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108793565|ref|YP_636715.1| hypothetical protein YPA_MT0033 [Yersinia pestis Antiqua]
 gi|108793765|ref|YP_636603.1| hypothetical protein YPN_MT0033 [Yersinia pestis Nepal516]
 gi|145597224|ref|YP_001154687.1| hypothetical protein YPDSF_4060 [Yersinia pestis Pestoides F]
 gi|149192767|ref|YP_001293998.1| hypothetical protein YPE_4284 [Yersinia pestis CA88-4125]
 gi|165939465|ref|ZP_02228012.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166012067|ref|ZP_02232965.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214439|ref|ZP_02240474.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167402354|ref|ZP_02307819.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422776|ref|ZP_02314529.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167427120|ref|ZP_02318873.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466691|ref|ZP_02331395.1| hypothetical protein YpesF_02105 [Yersinia pestis FV-1]
 gi|229896960|ref|ZP_04512119.1| putative helicase [Yersinia pestis Pestoides A]
 gi|229897748|ref|ZP_04512903.1| putative helicase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229900301|ref|ZP_04515436.1| putative helicase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904825|ref|ZP_04519935.1| putative helicase [Yersinia pestis Nepal516]
 gi|270491012|ref|ZP_06208085.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294502021|ref|YP_003565758.1| hypothetical protein YPZ3_pMT0029 [Yersinia pestis Z176003]
 gi|3883023|gb|AAC82683.1| unknown [Yersinia pestis KIM 10]
 gi|5834715|emb|CAB55212.1| hypothetical protein YPMT1.30 [Yersinia pestis CO92]
 gi|45357274|gb|AAS58668.1| hypothetical protein YP_pMT033 [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108777829|gb|ABG20347.1| hypothetical protein YPN_MT0033 [Yersinia pestis Nepal516]
 gi|108782112|gb|ABG16169.1| hypothetical protein YPA_MT0033 [Yersinia pestis Antiqua]
 gi|145212992|gb|ABP42397.1| hypothetical protein YPDSF_4060 [Yersinia pestis Pestoides F]
 gi|148872425|gb|ABR14914.1| hypothetical protein YPMT1.30 [Yersinia pestis CA88-4125]
 gi|165912653|gb|EDR31283.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165989001|gb|EDR41302.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204387|gb|EDR48867.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958269|gb|EDR55290.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048246|gb|EDR59654.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167053871|gb|EDR63703.1| Type III restriction enzyme, res subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229678140|gb|EEO74246.1| putative helicase [Yersinia pestis Nepal516]
 gi|229686660|gb|EEO78741.1| putative helicase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229693329|gb|EEO83379.1| putative helicase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229699996|gb|EEO88036.1| putative helicase [Yersinia pestis Pestoides A]
 gi|262363915|gb|ACY60634.1| hypothetical protein YPD4_pMT0029 [Yersinia pestis D106004]
 gi|262364072|gb|ACY64408.1| hypothetical protein YPD8_pMT0030 [Yersinia pestis D182038]
 gi|270334993|gb|EFA45771.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294352492|gb|ADE66548.1| hypothetical protein YPZ3_pMT0029 [Yersinia pestis Z176003]
 gi|320017555|gb|ADW01125.1| putative helicase [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 519

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +  E  +    GL  +  V  KR  + L E + E  ++V +++ E     R   +  L
Sbjct: 355 EAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLSSL 414

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--V 686
             G+ DVL+G  +L  G+D+P  G V +    K     ++  + Q +GR  R   ++  V
Sbjct: 415 AAGRIDVLIGSTILDVGVDVPSVGAVILGGGGK-----AEVEMRQRVGRGLRAKKNQANV 469

Query: 687 ILYADTITKSIQLAIDETTRRREK 710
               D I  S +  +  +  R+  
Sbjct: 470 CFITDFIDVSNKYLMSHSYERKHI 493


>gi|149187764|ref|ZP_01866061.1| ATP-dependent RNA helicase [Vibrio shilonii AK1]
 gi|148838644|gb|EDL55584.1| ATP-dependent RNA helicase [Vibrio shilonii AK1]
          Length = 430

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 83/247 (33%), Gaps = 17/247 (6%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D  H     +S            + + GF +P    NR L+           ++ SAT
Sbjct: 150 LLDHQHNRNITLSECEYLILDEADRMLDMGF-MPDL--NRILKRLPKER---QNMMFSAT 203

Query: 532 PGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRIL 586
                      I+ E I   + P       V+  +     + +       + ++   ++L
Sbjct: 204 FEQRIKTLAHRIMNEPIEVQVTPANSTADTVKQMVYPVDKKRKHELLAYLIGSRNWQQVL 263

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +   TK+ ++ L + L    I    ++ +     R + + D + GK   L+  ++   GL
Sbjct: 264 VFTKTKQGSDALAKELKLDGINAVSINGDKSQGARQKALDDFKSGKVRALIATDVAARGL 323

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETT 705
           DI +   V   +             I  IGR  R  ++   +       + +  AI+   
Sbjct: 324 DIQQLEQVVNFE-----LPYKAEDYIHRIGRTGRAGHAGFAVSLMSHDEQYLLEAIERLL 378

Query: 706 RRREKQL 712
             R  Q 
Sbjct: 379 DTRLPQE 385


>gi|160897598|ref|YP_001563180.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160363182|gb|ABX34795.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 504

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 12/178 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           T++ SAT            + +    ++ RP       VE R      +D    +    +
Sbjct: 187 TLLFSATFSPEIKRLASSYLQDPVTIEVARPNETAST-VEQRFYSVSDDDKRYALRSLLK 245

Query: 581 QG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           Q    +  +   +K     LT  L    +R   +H +    ER++ +   + G+ D+LV 
Sbjct: 246 QRDIRQAFVFSNSKLGCARLTRALERDGLRATALHGDKSQDERLKALEAFKRGEVDLLVC 305

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            ++   GLDI +   V   D        +    +  IGR  R   S + +   T   +
Sbjct: 306 TDVAARGLDIKDVPAVFNYDVPF-----NAEDYVHRIGRTGRAGASGIAVTLVTNHDA 358


>gi|108757460|ref|YP_630529.1| ATP-dependent RNA helicase [Myxococcus xanthus DK 1622]
 gi|108461340|gb|ABF86525.1| ATP-dependent RNA helicase [Myxococcus xanthus DK 1622]
          Length = 418

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 84/242 (34%), Gaps = 23/242 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFR--LPSCMDNRPLRFEEWNCLRPTTIVVS 529
            ++ + +  P +  +   +  R     + GF   L   + + P         R  T++ S
Sbjct: 134 LMENTAIRFPHLEALVLDEADRM---LDMGFLPQLERIVAHLP--------RRRQTLLFS 182

Query: 530 ATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRI- 585
           AT G       +  + + +   +  +G      E R    + E+    +     Q     
Sbjct: 183 ATLGPDVTRFAKSRLYKPVRLEVTRSGTPAERAEQRLYFLRPEEKTPLLLTLLAQDSATA 242

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           L+    K   + +   L     R   +H++    +R + +   R G +  LV  ++   G
Sbjct: 243 LVFTRAKERVDKVQRALQRAGHRTAVLHADRTQNQRKQAMEGFRNGTYRCLVATDIAARG 302

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI-LYADTITKSIQLAIDET 704
           LD+ + G V   D        +    +  IGR AR   S V   +A T    +   I+  
Sbjct: 303 LDVEDVGHVINYD-----LPHAAEDYVHRIGRTARAAASGVASTFATTREGQVITRIEHL 357

Query: 705 TR 706
            R
Sbjct: 358 MR 359


>gi|77359091|ref|YP_338666.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874002|emb|CAI85223.1| ATP-dependent RNA helicase with nucleoside triP hydrolase domain,
           putative cold-shock protein [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 420

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 78/232 (33%), Gaps = 20/232 (8%)

Query: 479 TIPQISGMYRGDFHRKATL-----AEYGF-RLPSCMDNRPLRFEEWNCLRPTTIVVSATP 532
           T+ +I  +   +  R   L       Y F R+P       L F      R   +      
Sbjct: 147 TLNEIEVVVLDEADRMFDLGFIKDIRYMFHRMPDTSKRLNLLFSATLSYRVQEL------ 200

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTK 592
               +   + + +E  ++    +   +   S   +++ +   I    +   + ++   TK
Sbjct: 201 AFEHMTNPEHVQIEPDVKTGKRIQEELFHPSQEDKIKLLLTLIEE--EWPEKAIIFANTK 258

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
              E +  +L     RV  +  +V   +R  I+ +   G  D LV  ++   GL IPE  
Sbjct: 259 HSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAEFSKGDLDFLVATDVAARGLHIPEVS 318

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAIDE 703
            V   D             +  IGR AR   +   I +A          I+E
Sbjct: 319 HVFNFD-----LPDDCEDYVHRIGRTARAGASGHAISFACEQYAYNLHEIEE 365


>gi|332886086|gb|EGK06330.1| hypothetical protein HMPREF9456_00204 [Dysgonomonas mossii DSM
           22836]
          Length = 446

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 71/183 (38%), Gaps = 11/183 (6%)

Query: 526 IVVSATPGSW--ELEQCQGIIVEQIIRPTGLVDPPVEIR--SARTQVEDVYDEINLAAQQ 581
           +++SAT      E    Q  +V   I+     +  +++     + ++E ++  I   +  
Sbjct: 171 VLLSATSDVEIPEFVGMQKPVVLDYIQEEKSDNLSIKLVLSPEKDKIESLFHLI--CSFN 228

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
               L+    + + E +++ L ++ ++  Y H  +   +R  I+   R G  + L+  +L
Sbjct: 229 SEPALIFCNHREVTERISDLLNKKGVQTGYYHGGMDQDDRERILIQFRNGSLNYLITTDL 288

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAI 701
              GLDIPE   V             ++  +   GR AR   S          + +   I
Sbjct: 289 AARGLDIPEMKHVI-----HYHLPAKESEFVHRNGRTARMHASGTSYIIQFKDEKMPDYI 343

Query: 702 DET 704
            +T
Sbjct: 344 SDT 346


>gi|297817434|ref|XP_002876600.1| hypothetical protein ARALYDRAFT_486601 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322438|gb|EFH52859.1| hypothetical protein ARALYDRAFT_486601 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 494

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  + R G    LV  +L   G
Sbjct: 361 IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRG 420

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +DI    +V   D     F R+  S +  +GR+ R  +  + +   T     ++
Sbjct: 421 IDIQAVNVVINFD-----FPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKM 469


>gi|294141997|ref|YP_003557975.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293328466|dbj|BAJ03197.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 430

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            ++L+   TK  AE L   L    I+    H +     R   + + + GK  V+V  ++ 
Sbjct: 242 QQVLVFATTKESAEHLKSELSLDGIKCGVFHGDRTQGARNRTLEEFKSGKIRVMVATDVA 301

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAI 701
             GLDI    LV  L+             I  +GR  R     + I +     + +   I
Sbjct: 302 ARGLDIQALPLVINLE-----LPYGAEDYIHRVGRTGRAGLTGRAISFVCPSDEEMLEEI 356

Query: 702 D 702
           +
Sbjct: 357 E 357


>gi|242007312|ref|XP_002424485.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212507903|gb|EEB11747.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 669

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 20/212 (9%)

Query: 561 IRSARTQVEDVYDEINLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           IR  + +  D    +    ++  R   ++ V TK  A  L   L   N++   +H  ++ 
Sbjct: 378 IRIRKGREGDKEAVLAALVRRTFRANCIIFVATKSQAHKLRILLGFLNMKAGELHGNLRQ 437

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            ER++ ++  + G+ D+LV  ++   GLDI     V   D        +    I  +GR 
Sbjct: 438 PERLDTLKRFKNGELDILVATDVAARGLDISGVKTVINYD-----LPMTFEHYIHRVGRT 492

Query: 679 ARNVNSKV-ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV----KEKIMEVI 733
           AR   S + +  A    + +   I        K+ E   K  I P  +    K+K+ E+ 
Sbjct: 493 ARAGRSGISVSLACESERKLVKEIV-------KKAERPVKSRIIPPQILLKYKKKVEELG 545

Query: 734 DPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
           + +              Q+  +     +  LK
Sbjct: 546 EDVDKV-LKEELEERLLQKAEMQMNAMEKKLK 576


>gi|193785886|dbj|BAG54673.1| unnamed protein product [Homo sapiens]
          Length = 800

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 571 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 630

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 631 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 688

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 689 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 743

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 744 AITFLTKEDSAVFYELKQAILES 766


>gi|167563223|ref|ZP_02356139.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis
           EO147]
 gi|167570404|ref|ZP_02363278.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis
           C6786]
          Length = 509

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I ++Q +     +   V     R   + + D + 
Sbjct: 239 QTMLFSATLDGKIGSLTGRLLKDPERIEIQQRLESRTNIAQTVHYVDDRDHKDRLLDHLL 298

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                    ++   TK  A+ L   L +       +H ++    R   IR LR  +  VL
Sbjct: 299 RDTALDQ-AIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARNRTIRALRERRVRVL 357

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 358 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 410

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 411 EQGALKRIER 420


>gi|15233064|ref|NP_191683.1| DEAD/DEAH box helicase, putative (RH12) [Arabidopsis thaliana]
 gi|42572753|ref|NP_974472.1| DEAD/DEAH box helicase, putative (RH12) [Arabidopsis thaliana]
 gi|75335832|sp|Q9M2E0|RH12_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 12
 gi|6850891|emb|CAB71054.1| DEAD box RNA helicase RH12 [Arabidopsis thaliana]
 gi|21539435|gb|AAM53270.1| DEAD box RNA helicase RH12 [Arabidopsis thaliana]
 gi|23197660|gb|AAN15357.1| DEAD box RNA helicase RH12 [Arabidopsis thaliana]
 gi|332646656|gb|AEE80177.1| DEAD-box ATP-dependent RNA helicase 12 [Arabidopsis thaliana]
 gi|332646657|gb|AEE80178.1| DEAD-box ATP-dependent RNA helicase 12 [Arabidopsis thaliana]
          Length = 498

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  + R G    LV  +L   G
Sbjct: 365 IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRG 424

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +DI    +V   D     F R+  S +  +GR+ R  +  + +   T     ++
Sbjct: 425 IDIQAVNVVINFD-----FPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKM 473


>gi|3776001|emb|CAA09203.1| RNA helicase [Arabidopsis thaliana]
          Length = 498

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  + R G    LV  +L   G
Sbjct: 365 IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRG 424

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +DI    +V   D     F R+  S +  +GR+ R  +  + +   T     ++
Sbjct: 425 IDIQAVNVVINFD-----FPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKM 473


>gi|324506443|gb|ADY42751.1| ATP-dependent RNA helicase DDX17 [Ascaris suum]
          Length = 543

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 558 PVEIRSARTQVEDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEV 616
            VE+    ++ + +   ++    +   + ++ V TKR A+DLT ++         +H + 
Sbjct: 333 IVEVLEESSKQQRLISILSDIMSEPECKTIIFVETKRKADDLTRWMRRDGWPALCIHGDK 392

Query: 617 KTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIG 676
              ER   + + + GK  +L+  ++   GLD+ +   V   D     +  +    +  IG
Sbjct: 393 GQSERDWALGEFKAGKTPILLATDVAARGLDVDDIKYVINYD-----YSNNSEDYVHRIG 447

Query: 677 RAARNVNSKVILYADT 692
           R  R           T
Sbjct: 448 RTGRCEKRGTAYTFFT 463


>gi|288818118|ref|YP_003432466.1| ATP-dependent RNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|288787518|dbj|BAI69265.1| ATP-dependent RNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|308751719|gb|ADO45202.1| DEAD/DEAH box helicase domain protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 365

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 16/193 (8%)

Query: 524 TTIVVSAT-PGSWEL-EQCQGIIVEQIIR------PTGLVDPPVEIRSARTQVEDVYDEI 575
            T + SAT P   EL  +       + +R         + +  + + S++ ++ ++   +
Sbjct: 176 QTFLFSATIPKEIELLARKHLKDDYKFVRVISAELKPKIEERLIRLNSSKQKISELERIL 235

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   ++++ V TK+ A D+++ L  R   V  +H ++   +R   ++  R GK   
Sbjct: 236 --REHLLEKVIIFVRTKKDARDISQELKNRGFSVVSLHGDMTQRQRENALKLFREGKVKT 293

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           +V  ++   GLDI    LV                 I  IGR  R  +        T   
Sbjct: 294 VVATDVASRGLDIKGVSLVINY-----QIPEDPEVYIHRIGRTGRVGSYGKAYSLITPED 348

Query: 696 SIQLA-IDETTRR 707
           S  L  I +   R
Sbjct: 349 SKALWRIKKVKER 361


>gi|260584701|ref|ZP_05852447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
           elegans ATCC 700633]
 gi|260157724|gb|EEW92794.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
           elegans ATCC 700633]
          Length = 509

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 103/270 (38%), Gaps = 35/270 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI----IRPTGLVDPPVEIRSARTQVEDVYDEINLA- 578
            T++ SAT    ++++     +++     I+ + +    ++    + +  + +D +    
Sbjct: 176 QTLLFSAT-MPDDIKRIGVQFMKEPEHVRIKSSEMTATLIDQYFVKCKDFEKFDIMTRLL 234

Query: 579 -AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
             Q     ++   TKR  ++L   L  R  R   +H ++   +R+ ++RD +    D+LV
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEMRGFRAEGIHGDLSQQKRMSVLRDFKNNHLDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKS 696
             ++   GLDI     V   D       +   S +  IGR  R       + +       
Sbjct: 295 ATDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGQEGMSVTFVTPNEMD 349

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
               I++ TR+R   L         P +  E I   +   + +        ID +  S+ 
Sbjct: 350 YLRVIEDLTRKRMTALR--------PPTQMEAIEGQMKSAIEQ--------IDEKMKSVD 393

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARI 786
            ++ K  +  L  + + A    + E AA +
Sbjct: 394 TRRFKEAISYLLDE-YEA----D-ELAALL 417


>gi|195612018|gb|ACG27839.1| nucleolar RNA helicase 2 [Zea mays]
          Length = 744

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 75/193 (38%), Gaps = 23/193 (11%)

Query: 524 TTIVVSATPGSWELEQCQ------------GIIVEQIIRPTGLVDPPVEIRSARTQVEDV 571
            +++ SAT  SW  +  +            G   E++     L   P+   S RT + D+
Sbjct: 269 QSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTATSKRTVLSDL 328

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                    +G + ++   TK+ A++++  L   +I    +H ++   +R   +   R G
Sbjct: 329 I----TVYAKGGKTIVFTRTKKDADEVSLALT-NSIASEALHGDISQHQRERTLNGFRQG 383

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYA 690
           KF VLV  ++   GLDIP   L+               + +   GR  R   +   IL  
Sbjct: 384 KFTVLVATDVAARGLDIPNVDLII-----HYELPNDPETFVHRSGRTGRAGKAGTAILMF 438

Query: 691 DTITKSIQLAIDE 703
            +  K    +++ 
Sbjct: 439 TSSQKRTVKSLER 451


>gi|194757571|ref|XP_001961038.1| GF13667 [Drosophila ananassae]
 gi|190622336|gb|EDV37860.1| GF13667 [Drosophila ananassae]
          Length = 782

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 96/262 (36%), Gaps = 31/262 (11%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIR-SARTQVE 569
           C    T++ SAT  S +++    + +++ ++            L    + IR       E
Sbjct: 333 CKTRQTMLFSAT-MSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDRE 391

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   +          ++ V TK+ A  L   L    +R   +H  +   +R+E ++  +
Sbjct: 392 PILASLICRTFHDH-CMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFK 450

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
             + DVL+  ++   GLDI     V            +    I  +GR AR   + +   
Sbjct: 451 EEQIDVLIATDVAARGLDIVGVKTVINF-----VMPITTEHYIHRVGRTARAGRAGI--- 502

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK----HNINPQSVKEKIMEVIDPILLEDAATTN 745
                 S+ LA  E  R+  K +  N +    + I P  + EK    +  +  E      
Sbjct: 503 ------SVSLA-GEKERKIVKDIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILE 555

Query: 746 ISIDAQQLSLSKKKGKAHLKSL 767
                +QL+ ++++     + L
Sbjct: 556 EEQAERQLAKTEQQLSKTERKL 577


>gi|122920436|pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
           Bacillus Subtilis Yxin Protein
 gi|122920437|pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
           Bacillus Subtilis Yxin Protein
          Length = 163

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 9/152 (5%)

Query: 553 GLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
            +    +++R    +   + D +    +     ++   TK     LT+ L +       +
Sbjct: 9   NIEHAVIQVRE-ENKFSLLKDVLM--TENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKI 65

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
           H  +   +R +++ + + G++  LV  ++   G+DI    LV   D   E     K S +
Sbjct: 66  HGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLE-----KESYV 120

Query: 673 QTIGRAARNVNS-KVILYADTITKSIQLAIDE 703
              GR  R  N  K I +     K     I+E
Sbjct: 121 HRTGRTGRAGNKGKAISFVTAFEKRFLADIEE 152


>gi|330984676|gb|EGH82779.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 625

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|289647882|ref|ZP_06479225.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 625

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|241888805|ref|ZP_04776111.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379]
 gi|241864481|gb|EER68857.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379]
          Length = 486

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 79/199 (39%), Gaps = 15/199 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSART------QVEDVYDE 574
           R  T++ SAT     +E  +  + + ++I+     D   +I    T      ++E +   
Sbjct: 174 RHQTLLFSATMPKTIMELSKEFMKDYKLIKTMSDEDLKPDITEYATIARENEKLETLVGF 233

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           ++   Q     ++   TKR  ++L   L  +      +H ++   +R+EI+R  +     
Sbjct: 234 LD--VQNPNLAIVFGRTKRRVDELASALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQ 291

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           +LV  ++   G+DI +   V   D       +   S    IGR  R   S V I + + +
Sbjct: 292 ILVATDVAARGIDISDVTHVYNFD-----IPQDVESYTHRIGRTGRAGKSGVAITFLNPV 346

Query: 694 TKSIQLAIDETTRRREKQL 712
                  I+ +   R K L
Sbjct: 347 EMPYLKDIENSRGERMKML 365


>gi|145297702|ref|YP_001140543.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850474|gb|ABO88795.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 406

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 76/192 (39%), Gaps = 12/192 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSAR-TQVEDVYDEINLA 578
            T++ SAT    EL      ++ +  R    P   +   +E R     +   V   I+L 
Sbjct: 175 QTLLFSAT-LPAELNAFAHSLLTEPTRIEANPLNSLVNEIEERLYLVNKSSKVPALISLL 233

Query: 579 AQQGL-RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            +Q   ++L+ +  +  A+ +   L    I V  +H E +   R + + D + GK  VLV
Sbjct: 234 KEQAWPQVLVFISARDDADGVARKLARAGIPVAALHGEKEQAVREQALDDFKAGKVLVLV 293

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             +L+  G+ +    +V  LD        S    +  IGR AR     + +      +S 
Sbjct: 294 ATDLMARGIHVEALPVVINLD-----LPASAPVYVHRIGRTARAGCEGLAISLVCHGESD 348

Query: 698 QLAIDETTRRRE 709
            LA   T   RE
Sbjct: 349 ILAAIRTLTGRE 360


>gi|109071704|ref|XP_001112413.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Macaca
           mulatta]
          Length = 648

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 83/211 (39%), Gaps = 26/211 (12%)

Query: 496 TLAEYGF---RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
            + + GF    +   +D RP R          T++ SAT         Q  + E +I   
Sbjct: 400 KMLDMGFEPQIMKILLDVRPDR---------QTVMTSATWPHSVHRLAQSYLKEPMIVYV 450

Query: 553 GLVDPP--------VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           G +D          + + +   +   ++  +   +    ++++ V  K +A+ L+  L  
Sbjct: 451 GTLDLVAVSSVKQNIIVTTEEEKWSHMHTFLQNMSSTD-KVIVFVSRKAVADHLSSDLIL 509

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            NI +  +H + +  +R + + + + GK  +L+  +L   GLD+ +   V   D     F
Sbjct: 510 GNISIESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFD-----F 564

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            R+    +  IGR  R   + V +   T   
Sbjct: 565 PRNIEEYVHRIGRTGRAGRTGVSITTLTRND 595


>gi|78778139|ref|YP_394454.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78498679|gb|ABB45219.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 411

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 69/172 (40%), Gaps = 9/172 (5%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++   +++ + +KR A+++     +        H ++   +R   + + +  K  +L   
Sbjct: 243 EKYELVIVFMSSKRAADNIAAKFRKHGFSADSFHGDLHQEDRNYTLEEFKTKKLQILFAT 302

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQ 698
           +L+  GLDI +   V   D       RS    I  IGR AR   +   I + D   ++  
Sbjct: 303 DLVSRGLDINDITCVINFD-----LPRSSADYIHRIGRTARAGKAGMAISFIDHEDEAHF 357

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDA 750
             I+   +R   +L+  +       +   K  +  +PI  +  +  + + +A
Sbjct: 358 RLIE---KRSNIRLKREQIEGFELTTEAPKREKGKEPIKGKGKSKKDRAREA 406


>gi|331009646|gb|EGH89702.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 625

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|306827075|ref|ZP_07460372.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782]
 gi|304430709|gb|EFM33721.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782]
          Length = 539

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRP-----TGLVDPPVEIRSARTQVEDVYDEINL 577
            T++ SAT P   +    + +   + ++      T +      +R    +  D    +  
Sbjct: 176 QTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLMD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              Q    ++   TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV
Sbjct: 236 -VNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +  
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIT-----QDPESYVHRIGRTGRAGKSGESITFVSPNEMG 349

Query: 698 QLAIDETTRRREKQL----------EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
            L++ E     +KQ+              K  +  + ++    +       +      + 
Sbjct: 350 YLSMIENL--TKKQMKPLRPATAEEAFQAKKKVALKKIERDFADETIRSNFDKFKGDAVQ 407

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQ 770
           + A+    + ++   ++ SL  Q
Sbjct: 408 LAAEF---TPEELALYILSLTVQ 427


>gi|213403328|ref|XP_002172436.1| ATP-dependent RNA helicase dbp8 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000483|gb|EEB06143.1| ATP-dependent RNA helicase dbp8 [Schizosaccharomyces japonicus
           yFS275]
          Length = 456

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 90/244 (36%), Gaps = 31/244 (12%)

Query: 535 WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRM 594
           +E++     I E + +   LV     +R A      +   ++    +   +++       
Sbjct: 218 YEVDTEGVSIPESLEQHYLLVAS--HVRDA-----YLVQLLSSPENEDKSVIVFANRTYT 270

Query: 595 AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLV 654
            E L   L   + RV  +HSE+   ER+  +   R     VL+  ++   GLDIP   +V
Sbjct: 271 VELLYRMLRLLDFRVTCLHSEMAQRERVNSLGRFRAEAARVLIATDVASRGLDIPSVKMV 330

Query: 655 AILDADKEGFLRSKTSLIQTIGRAARNVN-SKVILYADTITKSIQLAIDETTRRREKQL- 712
              D  ++         +  +GRAAR     + + +       +  AI++   R  KQ+ 
Sbjct: 331 VNYDIPRD-----PDDYVHRVGRAARVGRFGESVSFVTEHDVDLIHAIED---RVGKQMT 382

Query: 713 EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMH 772
            +           + K++E +  I       +   +D    S  KK          K+M 
Sbjct: 383 AYES-------FSENKMLEKLKQINEAKRKVSLELVDEDFGSRRKKLK-------EKRMM 428

Query: 773 LAAD 776
           +A+ 
Sbjct: 429 MASK 432


>gi|74318833|ref|YP_316573.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74058328|gb|AAZ98768.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 533

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 7/129 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + ++   TKR  E++++ L E       +H +++  +R   ++ LR G+  VLV  ++  
Sbjct: 247 QAIVFASTKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREGRTRVLVATDVAA 306

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
            G+D+     V   D       R     +  IGR  R   + + + +A      +   I+
Sbjct: 307 RGIDVASISHVINFD-----LPRQAEDYVHRIGRTGRAGRTGIAVSFAGMREGGLVKNIE 361

Query: 703 E-TTRRREK 710
             T  R E 
Sbjct: 362 RYTGNRIEV 370


>gi|91792775|ref|YP_562426.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91714777|gb|ABE54703.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 468

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 68/212 (32%), Gaps = 19/212 (8%)

Query: 482 QISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQ 541
            ++G+          + + GF       N        +  R  T++ SAT    E+ +  
Sbjct: 155 HLNGLELLILDEADRMLDLGFAPQLAAINAAA-----DHKRRQTLMFSATLEHDEINEIA 209

Query: 542 GIIVEQI--------IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
             +++                +   + +       + + + +    +   +I++   T+ 
Sbjct: 210 ATLLKSPNHIAIGAAYTEHADITQRIILVDHLDHKQALLEHVL-TNETNKQIIIFTATRV 268

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L   L ++      +   +    R +I+     G+  +LV  ++   GLD+    L
Sbjct: 269 DTERLASLLADKGFATAALSGNLNQGARNQIMDQFARGQKQILVTTDVASRGLDLINVSL 328

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           V   D  K          +  IGR  R     
Sbjct: 329 VINFDMPKF-----AEEYVHRIGRTGRAGAKG 355


>gi|50914526|ref|YP_060498.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
 gi|50903600|gb|AAT87315.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 539

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRP-----TGLVDPPVEIRSARTQVEDVYDEINL 577
            T++ SAT P   +    + +   + ++      T +      +R    +  D    +  
Sbjct: 176 QTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLMD 235

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
              Q    ++   TKR  +++T  L  R  R   +H ++   +R+ +IRD +  + D+LV
Sbjct: 236 -VNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   GLDI     V   D       +   S +  IGR  R   S   +   +  +  
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIT-----QDPESYVHRIGRTGRAGKSGESITFVSPNEMG 349

Query: 698 QLAIDETTRRREKQL----------EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
            L++ E     +KQ+              K  +  + ++    +       +      + 
Sbjct: 350 YLSMIENL--TKKQMKPLRPATAEEAFQAKKKVALKKIERDFADETIRSNFDKFKGDAVQ 407

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQ 770
           + A+    + ++   ++ SL  Q
Sbjct: 408 LAAEF---TPEELALYILSLTVQ 427


>gi|6320539|ref|NP_010619.1| Irc3p [Saccharomyces cerevisiae S288c]
 gi|74676421|sp|Q06683|IRC3_YEAST RecName: Full=Putative ATP-dependent helicase IRC3; AltName:
           Full=Increased recombination centers protein 3
 gi|914990|gb|AAB64767.1| Ydr332wp [Saccharomyces cerevisiae]
 gi|151942308|gb|EDN60664.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|190404727|gb|EDV07994.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
 gi|207346435|gb|EDZ72928.1| YDR332Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259145569|emb|CAY78833.1| Irc3p [Saccharomyces cerevisiae EC1118]
 gi|285811350|tpg|DAA12174.1| TPA: Irc3p [Saccharomyces cerevisiae S288c]
 gi|323338244|gb|EGA79477.1| Irc3p [Saccharomyces cerevisiae Vin13]
          Length = 689

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 6/128 (4%)

Query: 571 VYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           +   ++   ++ L+  LL  + K   + L +   +  I   Y+ S+ K +ER  II+  +
Sbjct: 266 LKTYLHKKQEKSLKSTLLFGVDKAHVQSLHKLFKDNGINTDYVTSDTKQIERDNIIQKFK 325

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+ +VL+   +  EG D+P    + +    K     S++ LIQ IGR  R  +SK   +
Sbjct: 326 NGETEVLMNCGIFTEGTDMPNIDCILLCRPTK-----SRSLLIQMIGRGLRLHHSKDHCH 380

Query: 690 ADTITKSI 697
                 + 
Sbjct: 381 IIDFIGAS 388



 Score = 45.5 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR----------PAIVMAPN 202
           Q  AI   +  I    K   +   TG GKT   + +I  +++           ++++   
Sbjct: 37  QQDAIDACVNSIRQGTKRIGVSLATGGGKTVIFSNLINQLRQNYFKERQGNFKSLILVHR 96

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           + LA Q  +  K  FP   V   +  YD
Sbjct: 97  RELALQATATLKKIFPDLKVHIEMGKYD 124


>gi|148546618|ref|YP_001266720.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148510676|gb|ABQ77536.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 453

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 98/283 (34%), Gaps = 27/283 (9%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS--------WELEQCQGIIVEQ 547
            + + GF      D   L  E     R  T++ SAT G           L+  + +++  
Sbjct: 169 RMLDMGF----AEDMERLCKEC--ENREQTLLFSATTGGAALRDIIGKVLKDPEHLMLNS 222

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           + +        +         E +   +  A +   + ++   T+ MA+ +  +L  +++
Sbjct: 223 VSQLAEGTRQQIITADHDQHKEQIAQWLL-ANETFDKAIIFTNTRAMADRIYGHLVAKDV 281

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +   +H E    +R   I   + G   VLV  ++   GLDI    LV   D  + G    
Sbjct: 282 KAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDVAARGLDIDGLDLVINFDMPRSG---- 337

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITK-----SIQLAIDETTRRREKQLEHNKKHNINP 722
               +  +GR  R     + +   T        SI+  + +   RR  +      +   P
Sbjct: 338 -DEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIERYLKQQFERRVIKEVKGTYNG--P 394

Query: 723 QSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
           + VK             +  T +    A++   +K K  A L 
Sbjct: 395 KKVKASGKAAGSKKKKVEKKTGDKKAAAKRKPTAKPKANAPLA 437


>gi|225450401|ref|XP_002278318.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296089875|emb|CBI39694.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++     +G + ++   TKR A++++  L   +I    +H ++   +R   +   R 
Sbjct: 354 ILSDLITVYAKGGKTIVFTQTKRDADEVSMALT-NSIASEALHGDISQHQRERTLNGFRQ 412

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GKF VLV  ++   GLDIP   L+               + +   GR  R       +
Sbjct: 413 GKFTVLVATDVAARGLDIPNVDLII-----HYELPNDPETFVHRSGRTGRAGKEGTAI 465


>gi|194208790|ref|XP_001498450.2| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19B isoform 1
           [Equus caballus]
          Length = 445

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 235 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNRDEKFQ 288

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 289 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 348

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 349 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 407

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 408 MVDSKHSMNIL----NR---IQEHFNKK 428


>gi|170747431|ref|YP_001753691.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653953|gb|ACB23008.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 527

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 59/183 (32%), Gaps = 17/183 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-----QIIRPTGLVDPPVEIR----SARTQVEDVYDE 574
            T+  SAT    E+E+   + +      ++ RP       +  R     A    +     
Sbjct: 179 QTLFFSAT-MPPEIERLADMFLHNPQRVEVARPASTATT-ITQRLVATGAEGHAKRERLR 236

Query: 575 INLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
             +  ++ L+  ++    KR    L + L         +H ++    R   +   R G+ 
Sbjct: 237 GLIRGEEDLKNGIIFCNRKRDVALLQKSLVSHGFDAAALHGDMDQRARTTALDGFRNGET 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTI 693
            +LV  ++   GLDIP    V   D             +  IGR  R   S         
Sbjct: 297 ALLVASDVAARGLDIPAVSHVFNFDV-----PHHPEDYVHRIGRTGRAGRSGTAYTLVAP 351

Query: 694 TKS 696
             +
Sbjct: 352 DDA 354


>gi|119504065|ref|ZP_01626146.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2080]
 gi|119460068|gb|EAW41162.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2080]
          Length = 437

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 88/262 (33%), Gaps = 35/262 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   ++++        +  ++  +   +  R     + GF      D R +   
Sbjct: 130 TPGRLLDLYQQNAM--------SFQKLEVLILDEADRM---LDMGFI----HDIRRIMKA 174

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSAR-TQVED 570
             N      ++ SAT      +  + I+   VE  + P       V   I      Q   
Sbjct: 175 LPNKR--QNLMFSATFSEDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPVDKNQKRH 232

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  E+        ++L+   TKR A  L E+L ++ I+   +H       R   + + + 
Sbjct: 233 LLVELINQ-HNWEQVLVFSRTKRGANRLAEFLDKKGIQAAAIHGNKSQGARTRALSEFKS 291

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILY 689
           GK  VLV  ++   GLDI +   V  LD             +  IGR  R   +   I  
Sbjct: 292 GKLRVLVATDIAARGLDIEQLPQVVNLD-----LPEVAQDYVHRIGRTGRAGATGQAISL 346

Query: 690 ADTITKSIQLAIDETTRRREKQ 711
                  +   I+     R  Q
Sbjct: 347 VSADEAQLLQDIE-----RLIQ 363


>gi|67971298|dbj|BAE01991.1| unnamed protein product [Macaca fascicularis]
          Length = 478

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 268 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 321

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 322 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 381

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 382 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 440

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 441 MVDSKHSMNIL----NR---IQEHFNKK 461


>gi|114053201|ref|NP_001039695.1| ATP-dependent RNA helicase DDX19B [Bos taurus]
 gi|82571656|gb|AAI10250.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [Bos taurus]
          Length = 484

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 274 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNSRDEKFQ 327

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   +++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 328 ALCNIYGAITIAQAMIFCHSRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREG 387

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 388 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 446

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 447 MVDSKHSMNIL----NR---IQEHFNKK 467


>gi|8216985|emb|CAB92442.1| DEAD-box protein [Homo sapiens]
 gi|12053019|emb|CAB66685.1| hypothetical protein [Homo sapiens]
 gi|119569155|gb|EAW48770.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo sapiens]
          Length = 648

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 82/211 (38%), Gaps = 26/211 (12%)

Query: 496 TLAEYGF---RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
            + + GF    +   +D RP R          T++ SAT         Q  + E +I   
Sbjct: 400 KMLDMGFEPQIMKILLDVRPDR---------QTVMTSATWPHSVHRLAQSYLKEPMIVYV 450

Query: 553 GLVDPP--------VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           G +D          + + +   +   +   +   +    ++++ V  K +A+ L+  L  
Sbjct: 451 GTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTD-KVIVFVSRKAVADHLSSDLIL 509

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            NI V  +H + +  +R + + + + GK  +L+  +L   GLD+ +   V   D     F
Sbjct: 510 GNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFD-----F 564

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            R+    +  IGR  R   + V +   T   
Sbjct: 565 PRNIEEYVHRIGRTGRAGRTGVSITTLTRND 595


>gi|15925071|ref|NP_372605.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927656|ref|NP_375189.1| hypothetical protein SA1885 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283733|ref|NP_646821.1| hypothetical protein MW2004 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486874|ref|YP_044095.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650754|ref|YP_186888.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161548|ref|YP_494683.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195982|ref|YP_500795.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148268533|ref|YP_001247476.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394597|ref|YP_001317272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151222197|ref|YP_001333019.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156980397|ref|YP_001442656.1| hypothetical protein SAHV_2066 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510293|ref|YP_001575952.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253316240|ref|ZP_04839453.1| putative helicase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006870|ref|ZP_05145471.2| putative helicase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257793840|ref|ZP_05642819.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
 gi|258407008|ref|ZP_05680158.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
 gi|258422029|ref|ZP_05684946.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
 gi|258433601|ref|ZP_05688674.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
 gi|258440496|ref|ZP_05690666.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258445704|ref|ZP_05693882.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
 gi|258450158|ref|ZP_05698253.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
 gi|258453208|ref|ZP_05701199.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus A5948]
 gi|258453387|ref|ZP_05701369.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
 gi|262049250|ref|ZP_06022125.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
 gi|262052494|ref|ZP_06024692.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
 gi|269203717|ref|YP_003282986.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282895275|ref|ZP_06303488.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
 gi|282911647|ref|ZP_06319446.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282923070|ref|ZP_06330755.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|282929553|ref|ZP_06336950.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
 gi|284025116|ref|ZP_06379514.1| putative helicase [Staphylococcus aureus subsp. aureus 132]
 gi|294850566|ref|ZP_06791293.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|295407012|ref|ZP_06816814.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
 gi|296275711|ref|ZP_06858218.1| putative helicase [Staphylococcus aureus subsp. aureus MR1]
 gi|297246745|ref|ZP_06930562.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
 gi|81648913|sp|Q6G7M9|Y1985_STAAS RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAS1985
 gi|81694077|sp|Q5HEB9|Y2072_STAAC RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SACOL2072
 gi|81704263|sp|Q7A0D2|Y2004_STAAW RecName: Full=Probable DEAD-box ATP-dependent RNA helicase MW2004
 gi|81705333|sp|Q7A4G0|Y1885_STAAN RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SA1885
 gi|81781186|sp|Q99SH6|Y2081_STAAM RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAV2081
 gi|122538977|sp|Q2FWH5|Y2316_STAA8 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SAOUHSC_02316
 gi|123484971|sp|Q2FF45|Y2037_STAA3 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SAUSA300_2037
 gi|13701876|dbj|BAB43168.1| SA1885 [Staphylococcus aureus subsp. aureus N315]
 gi|14247854|dbj|BAB58243.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21205175|dbj|BAB95869.1| MW2004 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245317|emb|CAG43792.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284940|gb|AAW37034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus COL]
 gi|87127522|gb|ABD22036.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203540|gb|ABD31350.1| ATP-dependent RNA helicase, DEAD box family, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147741602|gb|ABQ49900.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149947049|gb|ABR52985.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150374997|dbj|BAF68257.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156722532|dbj|BAF78949.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160369102|gb|ABX30073.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257787812|gb|EEV26152.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
 gi|257841341|gb|EEV65785.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
 gi|257841929|gb|EEV66361.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
 gi|257849332|gb|EEV73311.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
 gi|257852565|gb|EEV76483.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257855543|gb|EEV78480.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
 gi|257856632|gb|EEV79538.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
 gi|257859154|gb|EEV82011.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus A5948]
 gi|257864368|gb|EEV87114.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
 gi|259159615|gb|EEW44661.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
 gi|259162615|gb|EEW47182.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
 gi|262076007|gb|ACY11980.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269941681|emb|CBI50088.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
 gi|282324412|gb|EFB54725.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282589032|gb|EFB94136.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
 gi|282593261|gb|EFB98258.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|282762348|gb|EFC02495.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
 gi|285817746|gb|ADC38233.1| Cold-shock DEAD-box protein A [Staphylococcus aureus 04-02981]
 gi|294822586|gb|EFG39028.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|294968037|gb|EFG44064.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
 gi|297176405|gb|EFH35677.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
 gi|312830433|emb|CBX35275.1| DEAD/DEAH box helicase family protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315128752|gb|EFT84752.1| putative helicase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315196987|gb|EFU27329.1| putative helicase [Staphylococcus aureus subsp. aureus CGS01]
 gi|323439203|gb|EGA96930.1| ATP-dependent RNA helicase [Staphylococcus aureus O11]
 gi|323442419|gb|EGB00048.1| ATP-dependent RNA helicase [Staphylococcus aureus O46]
 gi|329314766|gb|AEB89179.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329724041|gb|EGG60565.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329726361|gb|EGG62829.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329729332|gb|EGG65740.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 506

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 15/193 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTG--LVDPPVE----IRSARTQVEDVYDEIN 576
            T++ SAT P + +    Q +   +II+     + DP +E    I     + +   + ++
Sbjct: 177 QTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLD 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++L
Sbjct: 237 --VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINIL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLDI     V   D       +   S    IGR  R     + + + + I  
Sbjct: 295 VATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349

Query: 696 SIQLAIDETTRRR 708
                I++   R+
Sbjct: 350 DYIRQIEDANGRK 362


>gi|312079251|ref|XP_003142094.1| hypothetical protein LOAG_06510 [Loa loa]
 gi|307762742|gb|EFO21976.1| hypothetical protein LOAG_06510 [Loa loa]
          Length = 798

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 48/116 (41%), Gaps = 3/116 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   T++ AE L   + +R   V  +H E+   +R   I+  +   + VL+  N+   
Sbjct: 650 AIIFCYTRKSAEWLAARMGQRGHDVTVLHGEMTIEDRARTIQQFKDSVYKVLITTNVCAR 709

Query: 645 GLDIPECGLVAILDAD---KEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           G+D+ +  +V   D      +       + I  IGR  R   + + +   +   S+
Sbjct: 710 GIDVSQVSVVINYDPPVTYVDNPQPDYETYIHRIGRTGRFGKAGIAINLVSDDFSL 765


>gi|240172264|ref|ZP_04750923.1| cold-shock DEAD-box protein, DeaD [Mycobacterium kansasii ATCC
           12478]
          Length = 570

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 9/164 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG---KFDVLVGI 639
             +++ V TK+  E++ E L  R      ++ ++   +R   I  LR G     D+LV  
Sbjct: 253 EAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQQQRERTITALREGGPNGIDILVAT 312

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS-IQ 698
           ++   GLD+     V   D           S +  IGR  R       L   +  +  + 
Sbjct: 313 DVAARGLDVERISHVLNYD-----IPHDTESYVHRIGRTGRAGRPGAALLFVSPRERHLL 367

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAA 742
            AI++ TR+   + E     ++N Q V +    + D +     A
Sbjct: 368 KAIEKATRQTMTEAELPTVEDVNAQRVAKFSDSITDALAKPGVA 411


>gi|242020630|ref|XP_002430755.1| ATP-dependent RNA helicase DDX19B, putative [Pediculus humanus
           corporis]
 gi|212515952|gb|EEB18017.1| ATP-dependent RNA helicase DDX19B, putative [Pediculus humanus
           corporis]
          Length = 480

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 78/195 (40%), Gaps = 11/195 (5%)

Query: 513 LRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP--------TGLVDPPVEIRSA 564
           LR  ++   +   ++ SAT     +E  +GI +  +I            +    V   S 
Sbjct: 259 LRIRKFLGEKCQMMLFSATYEQEVVEFAEGIFLNPMILSLKREEESLDNIKQYYVMCNSE 318

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           + + + + + I      G   ++   T++ A  L E++ +    V  +  E+   +RI +
Sbjct: 319 KDKYQAIIN-IYGVVTIGQ-AMIFCQTRKTASWLAEHMSKDGHAVAMLSGELTVEQRIAV 376

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE-GFLRSKTSLIQTIGRAARNVN 683
           +   R GK  VL+  N+L  G+DI +  +V   D  ++        + +  IGR  R   
Sbjct: 377 LNRFRDGKEKVLITTNVLSRGIDIEQVTIVVNFDLPRDPNGKPDYETYLHRIGRTGRFGK 436

Query: 684 SKVILYADTITKSIQ 698
           + + +        ++
Sbjct: 437 AGLAINLIQDQSDME 451


>gi|210134447|ref|YP_002300886.1| ATP-dependent RNA helicase [Helicobacter pylori P12]
 gi|210132415|gb|ACJ07406.1| ATP-dependent RNA helicase [Helicobacter pylori P12]
          Length = 492

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 34/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++        +  H  +P++  +   D      + + GF     +D+    F+
Sbjct: 144 TPGRLLDHLKN------ERIHKFVPKVVVLDESD-----EMLDMGF-----LDDIEEIFD 187

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVY 572
                    ++ SAT     +++    I+E  I+    P+ + +  +  R       +  
Sbjct: 188 YLPSEA-QILLFSAT-MPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERA 245

Query: 573 DEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + I      Q   + ++   TK+ A++L ++L  +N +   +H ++   +R   I   + 
Sbjct: 246 EAIMHLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              DVLV  ++   GLDI     V            +  S I  IGR  R     + +  
Sbjct: 306 NDADVLVATDVASRGLDISGVSHVFNYH-----LPLNTESYIHRIGRTGRAGKKGMAITL 360

Query: 691 DTITK-----SIQLAID 702
            T  +      +Q  ID
Sbjct: 361 VTPLEYKELLRMQKEID 377


>gi|113971464|ref|YP_735257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113886148|gb|ABI40200.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 549

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 70/200 (35%), Gaps = 15/200 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEIN 576
           +   ++ SAT      E  +G++   VE  + P       V+  I       +       
Sbjct: 178 KRQNLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQL 237

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +  +   ++L+   TK  A  L + L +  I    +H       R + + D + G+  VL
Sbjct: 238 IKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-----VILYAD 691
           V  ++   GLDI +   V   D             +  IGR  R          V     
Sbjct: 298 VATDIAARGLDIDQLPQVVNFD-----LPNVPEDYVHRIGRTGRAGALGQAVSLVSSEET 352

Query: 692 TITKSIQLAIDETTRRREKQ 711
            + + I+  I+    R+E +
Sbjct: 353 KLLRDIERLINRVLERQEVE 372


>gi|320168199|gb|EFW45098.1| DEAD box polypeptide 49 [Capsaspora owczarzaki ATCC 30864]
          Length = 611

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 113/326 (34%), Gaps = 50/326 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++  +S L +  +   +                L E GF   S   NR L   
Sbjct: 303 TPGRLADHLNSNSQLSLARARFLV----------LDEADRLLEEGF---SPDLNRILAAA 349

Query: 517 EWNCLRPTTIVVSATP-----GSWELEQCQGIIVE--QIIRPTGLVDPPVEIRSARTQVE 569
                +  T++ SAT          +     +  E    +     +D    I  A+  V+
Sbjct: 350 S--NPQRQTLLFSATITKNIANLESMSMSNVVHYETKSSVATVTTLDQRFVITPAK--VK 405

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D Y    L   +   I++   + R  E +T  +     R   +HSE+    R+  +   +
Sbjct: 406 DCYLSYLLGQHEDKSIIVFTSSCRNCETITRMIKALGFRCVALHSEMSQSMRLGSLAKFK 465

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
               ++L+  ++   GLDIP   LV   D  +     + T  +  +GR AR     + + 
Sbjct: 466 SSIVNILIATDVASRGLDIPTVKLVINNDVPR-----TSTDYVHRVGRTARAGRGGMAVT 520

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ-SVKEKIMEVIDPILLEDAATTNISI 748
             T                  Q +     +I  +  VK   + + +   L +      + 
Sbjct: 521 FVT------------------QYDIELIQHIESKIKVKLSALTMDEDAALVNLNDVTTAK 562

Query: 749 DAQQLSLSKKK-GKAHLKSLRKQ-MH 772
               + ++++  G+   ++L KQ MH
Sbjct: 563 RTAIMEMAEENFGERRRRNLEKQDMH 588


>gi|301344661|ref|ZP_07225402.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AB056]
 gi|301512465|ref|ZP_07237702.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AB058]
 gi|301595454|ref|ZP_07240462.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AB059]
          Length = 347

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 54/165 (32%), Gaps = 11/165 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVYDEINL 577
           R  T++ SAT     +   + ++ E     I           +        E     +  
Sbjct: 188 RGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTH 247

Query: 578 AAQQG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   + ++   T+   + L E L E    V  +H  +    R   +R +R G+  +
Sbjct: 248 WLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKI 307

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           LV  ++   GLD+P    V        G        +  IGR  R
Sbjct: 308 LVATDVAARGLDVPTISHVINF-----GLPMKHEDYVHRIGRTGR 347


>gi|258422918|ref|ZP_05685818.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
 gi|257846942|gb|EEV70956.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
          Length = 506

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 15/193 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTG--LVDPPVE----IRSARTQVEDVYDEIN 576
            T++ SAT P + +    Q +   +II+     + DP +E    I     + +   + ++
Sbjct: 177 QTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLD 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++L
Sbjct: 237 --VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINIL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLDI     V   D       +   S    IGR  R     + + + + I  
Sbjct: 295 VATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349

Query: 696 SIQLAIDETTRRR 708
                I++   R+
Sbjct: 350 DYIRQIEDANGRK 362


>gi|257426220|ref|ZP_05602635.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428878|ref|ZP_05605272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257431487|ref|ZP_05607860.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257434197|ref|ZP_05610547.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257437110|ref|ZP_05613150.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282914927|ref|ZP_06322707.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|282925469|ref|ZP_06333123.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus C101]
 gi|293508999|ref|ZP_06667786.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510911|ref|ZP_06669610.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293547513|ref|ZP_06672188.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257270925|gb|EEV03098.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257274220|gb|EEV05737.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257277728|gb|EEV08398.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257280836|gb|EEV10981.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257283503|gb|EEV13630.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282312870|gb|EFB43271.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus C101]
 gi|282321130|gb|EFB51461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|290919633|gb|EFD96706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291094703|gb|EFE24975.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466196|gb|EFF08723.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus M809]
          Length = 506

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 15/193 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTG--LVDPPVE----IRSARTQVEDVYDEIN 576
            T++ SAT P + +    Q +   +II+     + DP +E    I     + +   + ++
Sbjct: 177 QTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLD 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++L
Sbjct: 237 --VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINIL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLDI     V   D       +   S    IGR  R     + + + + I  
Sbjct: 295 VATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349

Query: 696 SIQLAIDETTRRR 708
                I++   R+
Sbjct: 350 DYIRQIEDANGRK 362


>gi|253744188|gb|EET00428.1| ATP-dependent RNA helicase [Giardia intestinalis ATCC 50581]
          Length = 900

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +         +  ++L+ V TK   E LT  L   N+R   ++  +   +R   + D   
Sbjct: 287 LLYICRELVPKTWKLLVFVATKHHCEYLTSILQANNLRATCIYGSLDQRQRTIALSDFDK 346

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           G++++L+  ++   G+DIP    V   +     F  S  + +  +GR+AR  +  + +
Sbjct: 347 GRYNILISTDVAARGIDIPSLDCVINYN-----FPSSGKNYVHRVGRSARAGSYGLCV 399


>gi|195995533|ref|XP_002107635.1| hypothetical protein TRIADDRAFT_51339 [Trichoplax adhaerens]
 gi|190588411|gb|EDV28433.1| hypothetical protein TRIADDRAFT_51339 [Trichoplax adhaerens]
          Length = 418

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 17/141 (12%)

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           L  L  +  E L + + +      Y+H+++   +R  +  D R G+   LV  +L   G+
Sbjct: 279 LNTLFAKRVELLAKKITQLGYSCFYIHAQMSQHDRNRVFHDFRRGECRNLVCTDLFTRGI 338

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTR 706
           DI    +V   D     F  S  + +  IGR+ R  +  + +   T             R
Sbjct: 339 DIQAVNVVINFD-----FPISSETYLHRIGRSGRFGHLGLAINLVTPND----------R 383

Query: 707 RREKQLEHNKKHNI--NPQSV 725
           R   Q+E      I   PQ+V
Sbjct: 384 RSLYQIEEELATTIKAIPQNV 404


>gi|156973271|ref|YP_001444178.1| ATP-dependent RNA helicase SrmB [Vibrio harveyi ATCC BAA-1116]
 gi|156524865|gb|ABU69951.1| hypothetical protein VIBHAR_00952 [Vibrio harveyi ATCC BAA-1116]
          Length = 407

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 85/246 (34%), Gaps = 30/246 (12%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           ++D        I  +   +  R     + GF  P+   +R      W   R  T++ SAT
Sbjct: 139 YIDAERFDCRAIEWLILDEADRM---LDMGFA-PTV--DRLSNECRW---RKQTLLFSAT 189

Query: 532 PGSWELEQCQGIIVEQIIRPTGL-VDPPVEIRSARTQVEDVYDEINLA--------AQQG 582
               E +  +G   + +  P  +    P+  R    Q     D+             +Q 
Sbjct: 190 ---LEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADDAEHKLALLKHIITEQA 246

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++ + T+    +L   L    I   ++  E+    R   I   R G  +VL+  ++ 
Sbjct: 247 ERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFREGTVNVLLATDVA 306

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             G+D+P+   V   D  +     +    +  IGR AR       I   +   + +   +
Sbjct: 307 ARGIDLPDVSHVINYDMPR-----TADVYLHRIGRTARAGKKGNAISIVEAHDQPM---M 358

Query: 702 DETTRR 707
           D   R 
Sbjct: 359 DRVARY 364


>gi|71736442|ref|YP_272752.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298485028|ref|ZP_07003125.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|71556995|gb|AAZ36206.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298160438|gb|EFI01462.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 625

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|49484306|ref|YP_041530.1| helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282904748|ref|ZP_06312622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|282906426|ref|ZP_06314277.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282920258|ref|ZP_06327982.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus C427]
 gi|283958860|ref|ZP_06376305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|295428668|ref|ZP_06821294.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|81650664|sp|Q6GEZ3|Y2168_STAAR RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAR2168
 gi|49242435|emb|CAG41149.1| putative helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282316118|gb|EFB46499.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus C427]
 gi|282330376|gb|EFB59894.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282594781|gb|EFB99758.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|283789578|gb|EFC28401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|295127338|gb|EFG56978.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|315193240|gb|EFU23638.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 506

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 15/193 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTG--LVDPPVE----IRSARTQVEDVYDEIN 576
            T++ SAT P + +    Q +   +II+     + DP +E    I     + +   + ++
Sbjct: 177 QTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLD 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++L
Sbjct: 237 --VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINIL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLDI     V   D       +   S    IGR  R     + + + + I  
Sbjct: 295 VATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349

Query: 696 SIQLAIDETTRRR 708
                I++   R+
Sbjct: 350 DYIRQIEDANGRK 362


>gi|291389065|ref|XP_002711079.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Oryctolagus
           cuniculus]
          Length = 820

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 591 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 650

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 651 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 708

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 709 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 763

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 764 AITFLTKEDSAVFYELKQAILES 786


>gi|223674095|pdb|3G0H|A Chain A, Human Dead-Box Rna Helicase Ddx19, In Complex With An Atp-
           Analogue And Rna
          Length = 424

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 218 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 271

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 272 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 331

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 332 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 390

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 391 MVDSKHSMNIL----NR---IQEHFNKK 411


>gi|62241024|ref|NP_001014451.1| ATP-dependent RNA helicase DDX19B isoform 2 [Homo sapiens]
 gi|114663450|ref|XP_001169732.1| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 4 [Pan
           troglodytes]
 gi|12052804|emb|CAB66574.1| hypothetical protein [Homo sapiens]
 gi|119572219|gb|EAW51834.1| hCG1998531, isoform CRA_e [Homo sapiens]
 gi|190689577|gb|ACE86563.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B protein [synthetic
           construct]
 gi|190690941|gb|ACE87245.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B protein [synthetic
           construct]
          Length = 448

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 238 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 291

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 292 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 351

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 352 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 410

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 411 MVDSKHSMNIL----NR---IQEHFNKK 431


>gi|73996608|ref|XP_851051.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 2 [Canis familiaris]
          Length = 820

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 591 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 650

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 651 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 708

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 709 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 763

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 764 AITFLTKEDSAVFYELKQAILES 786


>gi|313683287|ref|YP_004061025.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313156147|gb|ADR34825.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 526

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 97/284 (34%), Gaps = 55/284 (19%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIR---SARTQVEDVYDEINL 577
            T++ SAT   P     E+         I  +   +  +  +      ++ +D    +  
Sbjct: 188 QTLLFSATMPAPIKQLAERILVNPFFASITKSETTNTDITQQYYVIEESERDDAIIRLMD 247

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
            ++   + ++   TK+  + L+  L       + +H +++  +R  +I+ L+    DVL+
Sbjct: 248 -SEDAKKTVVFCRTKKEVDRLSNVLSAAGYMAKGLHGDMEQRQRESVIKGLKTDAVDVLI 306

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT----- 692
             ++   GL I +   V       +       S +  IGR  R     V +   T     
Sbjct: 307 ATDVAARGLHIDDVTHVFNYHIPFD-----PESYVHRIGRTGRAGKKGVAITLVTPLEFK 361

Query: 693 --------ITKSIQLA------------IDETTRRREKQLEHNKKHNINPQSVKEKIMEV 732
                   +  +++ A            +    R  EKQ  +++ H         K++++
Sbjct: 362 ELQRIRAKVGTTMEHAYIPSKLDVKEAQVSRLVREIEKQHVYDEAH---------KVLDL 412

Query: 733 IDPILLEDAA---------TTNISIDAQQLSLSKKKGKAHLKSL 767
           +     ++             N       + ++ ++ +  L +L
Sbjct: 413 LKQDYDQEQIAYKLISVLMERNTVQGPNNIGIAAERLEKILSNL 456


>gi|307941598|ref|ZP_07656953.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
 gi|307775206|gb|EFO34412.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
          Length = 436

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 67/189 (35%), Gaps = 15/189 (7%)

Query: 522 RPTTIVVSAT-PGSWE-LEQCQGIIVEQII-----RPTGLVDPPVEIRSARTQVEDVYDE 574
           +  T++ SAT P   E L +      E++      +    V   V     + +   + D 
Sbjct: 180 KRQTLLFSATMPRQIEDLARTYLHKPERVEVAPAGKTAERVAQSVHFMDQKAKSGFLVDM 239

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           I   A      L+   TK  AE L + L    +    +H      +R   I+ LR G   
Sbjct: 240 ICERADD--TCLVFCRTKHGAERLMKRLVAAGVSAGSIHGNKSQNQRDRAIKGLREGTLK 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTI 693
           VLV  ++   G+DIP    V   +           + +  IGR AR   S   I      
Sbjct: 298 VLVATDVAARGIDIPGVSHVYNFE-----LPEVAEAYVHRIGRTARAGASGDAISLCSAE 352

Query: 694 TKSIQLAID 702
             ++   I+
Sbjct: 353 EVALLRQIE 361


>gi|299890779|ref|NP_001177729.1| ATP-dependent RNA helicase DDX19B isoform 3 [Mus musculus]
          Length = 467

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 70/189 (37%), Gaps = 21/189 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 269 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNREEKFQ 322

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 323 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 382

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 383 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 441

Query: 690 ADTITKSIQ 698
                 S+ 
Sbjct: 442 MVDSKHSMN 450


>gi|299135820|ref|ZP_07029004.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298601944|gb|EFI58098.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 490

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 62/176 (35%), Gaps = 9/176 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            T+  SAT  +   E  +  +   +   I  T      VE+R      +    +++   +
Sbjct: 213 QTMCYSATLDASIREIVRDYVNNPVRIEIGTTSKPSDRVELRVYTVMQDQKLAQLDKMLK 272

Query: 581 QGLRI-LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +     L+   TK  A+ + + L +       +H +    +R   +R+  +GK  +LV  
Sbjct: 273 EEEGTYLVFSRTKHGADRIAKKLEKAGHLTEVIHGDRSQSQRTAALRNFTMGKARILVAT 332

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           ++   G+D+     V   D             +  IGR  R     V     T  +
Sbjct: 333 DVAARGIDVSHIAHVVNYD-----LPNGSDDFVHRIGRTGRAGAKGVATTFVTPLE 383


>gi|296211536|ref|XP_002752462.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like
           [Callithrix jacchus]
          Length = 820

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 591 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 650

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 651 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 708

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 709 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 763

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 764 AITFLTKEDSAVFYELKQAILES 786


>gi|293411880|ref|ZP_06654605.1| type III restriction enzyme [Escherichia coli B354]
 gi|291469435|gb|EFF11924.1| type III restriction enzyme [Escherichia coli B354]
          Length = 519

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +  E  L  Q  L  +  V  KR  + L E + E  +RV +++ E     R   +  L
Sbjct: 355 EAIVREALLYKQHSLNCMTLVRLKRHGQILMEMMKESGLRVDFIYGESNQATRQAKLNSL 414

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--V 686
             G+ DVL+G  +L  G+D+P  G V +    K     ++  + Q +GR  R   ++  V
Sbjct: 415 ASGEIDVLIGSTILDVGVDVPSVGAVILAGGGK-----AEVEMRQRVGRGLRAKKNQANV 469

Query: 687 ILYADTITKSIQLAIDETTRRREK 710
               D I  S +  +  +  R+  
Sbjct: 470 CFITDFIDTSNKYLLSHSYERKHI 493


>gi|261404961|ref|YP_003241202.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261281424|gb|ACX63395.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
          Length = 506

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 84/254 (33%), Gaps = 47/254 (18%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
           +  T+  SAT    E+ Q    ++   ++        VEI    +  E +   + L    
Sbjct: 180 KKQTLFFSAT-MPAEITQLVQTLLHNPVK--------VEITPVSSTAERIEQSVYLLETG 230

Query: 582 GLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRD 627
             +               L+   TKR A+ +   L + NI  + +H +     R   + +
Sbjct: 231 NKQQQLNELMKDPSIVSALVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNN 290

Query: 628 LRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVI 687
            + G   VLV  ++   G+DI E   V   +           + +  IGR  R   S   
Sbjct: 291 FKSGATRVLVATDIAARGIDIDELSHVINFN-----LPNIPETYVHRIGRTGRAGLSGTA 345

Query: 688 LYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
           +            +DE    R+ +           + + + I EV D       A     
Sbjct: 346 ISFCE--------VDEVPFLRDIE-----------KLIGKSIPEVKDHAFPMSGALRAAK 386

Query: 748 IDAQQLSLSKKKGK 761
           +D    S S K GK
Sbjct: 387 VDPTPKSGSSKPGK 400


>gi|227545125|ref|ZP_03975174.1| ATP-dependent DNA helicase/translocase [Lactobacillus reuteri
           CF48-3A]
 gi|300909204|ref|ZP_07126665.1| competence protein FA [Lactobacillus reuteri SD2112]
 gi|227184913|gb|EEI64984.1| ATP-dependent DNA helicase/translocase [Lactobacillus reuteri
           CF48-3A]
 gi|300893069|gb|EFK86428.1| competence protein FA [Lactobacillus reuteri SD2112]
          Length = 444

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 84/204 (41%), Gaps = 17/204 (8%)

Query: 507 CMDNRPLRFEEWNCLRPT--TIVVSATPGS---WELEQCQGIIVEQIIRPTGLVDPPVEI 561
              N  L +     ++     + ++ATPG     E++  + ++    +R  G + P +++
Sbjct: 215 YAANASLLYATKQAIKENGGCLYLTATPGDALLREIKSKRLVVNYLPLRYHGHLLPQIKV 274

Query: 562 RSART--------QVE-DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYM 612
           R A          Q+   V  ++    ++G   LL V        +   L       R+ 
Sbjct: 275 RLAFGWRRRLERQQLPPQVIQQLQETLKEGHHFLLFVPHIADLALVEAALRHSFTTFRFA 334

Query: 613 HSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLI 672
                 LER+E ++ +R G +D LV  ++L  G+  PE   V +L AD   F  S ++L+
Sbjct: 335 TVHASDLERLEKVQKMRDGDYDFLVTTSILERGVTFPEID-VYVLGADDPVF--SSSALV 391

Query: 673 QTIGRAARNVNSKVILYADTITKS 696
           Q  GRA R+ +         I  +
Sbjct: 392 QIAGRAGRSQSRPTGRVIFWINCN 415


>gi|226323669|ref|ZP_03799187.1| hypothetical protein COPCOM_01444 [Coprococcus comes ATCC 27758]
 gi|225207853|gb|EEG90207.1| hypothetical protein COPCOM_01444 [Coprococcus comes ATCC 27758]
          Length = 130

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 9/129 (6%)

Query: 326 RGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHY 385
            G F V G  I+I+P   E++  R+  +G++++ I  F   + + + N+E I IY     
Sbjct: 4   PGQFAVRGGIIDIYPL-TEELPIRIEFWGDEVDSIRTFDVDSQRSVENLEQIVIYPADDR 62

Query: 386 VTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQR-----ITYDLEMLETTGSCQ 440
           +     ++    +   + K  L+ L++  RLLE  RL +           E +E TG  +
Sbjct: 63  LGSDRKVSFINYF---DPKDTLVFLDEPARLLEKGRLAENEVEKARENRAEEMERTGEME 119

Query: 441 SIENYSRYL 449
               + R +
Sbjct: 120 EAPEFLRLM 128


>gi|114663466|ref|XP_001169596.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
 gi|114663468|ref|XP_001169690.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
 gi|114663470|ref|XP_001169708.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]
 gi|119572218|gb|EAW51833.1| hCG1998531, isoform CRA_d [Homo sapiens]
 gi|194384542|dbj|BAG59431.1| unnamed protein product [Homo sapiens]
          Length = 328

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 118 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 171

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 172 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 231

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 232 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 290

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 291 MVDSKHSMNIL----NR---IQEHFNKK 311


>gi|289618319|emb|CBI55043.1| unnamed protein product [Sordaria macrospora]
          Length = 655

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 6/136 (4%)

Query: 570 DVYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           D+      A     +  L+  +     ED+T          R +  +    ER +I+   
Sbjct: 260 DIAVRTWYAKAGNRKSTLVFCVDLAHVEDMTATFRRYGYDARSVAGDTPVKERAQILDAF 319

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           +  +F VLV   +  EG DIP    + +    +     SK  LIQ IGR  R    K   
Sbjct: 320 KKFEFPVLVNCGVFTEGTDIPNIDCILMARPTR-----SKNLLIQMIGRGMRLYPGKENC 374

Query: 689 YADTITKSIQLAIDET 704
           +   +  S++  I  T
Sbjct: 375 HIIDMVSSLETGIVTT 390



 Score = 42.4 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM------QRPAIVMAPNKILA 206
           Q   I  +L  I+   K   +   TGSGKT     +I+ +          +++A  + L 
Sbjct: 35  QEECIQSVLAAINQGHKRLGVSLATGSGKTVIFIHLIDRVAPRSENATQTLIIAHRRELV 94

Query: 207 AQLYSEFKNFFPHNAVE 223
            Q      N +P+  VE
Sbjct: 95  EQAARHCANTYPNKTVE 111


>gi|294888665|ref|XP_002772561.1| ATP-dependent RNA helicase rok1, putative [Perkinsus marinus ATCC
           50983]
 gi|239876829|gb|EER04377.1| ATP-dependent RNA helicase rok1, putative [Perkinsus marinus ATCC
           50983]
          Length = 239

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 78/195 (40%), Gaps = 21/195 (10%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L  V +K  A++LT+ L    + V  +HS++   +R   I + RLGK  +L+  +++  
Sbjct: 53  CLAFVQSKARAQELTKELMFDGVFVACIHSDMSRKQRDTCIENFRLGKIWILICTDVMAR 112

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           G+D      V  +D       R+  + I  +GR  R  N    +    T  K     I  
Sbjct: 113 GVDFKGVAQVINID-----IPRASATYIHRVGRTGRAGNKGEAVTMFTTEDKPYLRPIIS 167

Query: 704 TTRRREKQL---EHNKKHNINPQ---------SVKEKIMEVIDPILLEDAATTNISIDAQ 751
             ++    +    ++  H   P+         S  +K ++      L       I+   Q
Sbjct: 168 VMKQSGLDIPSWLNDLPH---PKKGAGSKQKNSEYKKPLDRGHLTTLSGYDRQRIAKRKQ 224

Query: 752 QLSLSKKKGKAHLKS 766
            +S+SK++ K ++  
Sbjct: 225 MISMSKEQKKRNIAQ 239


>gi|241948951|ref|XP_002417198.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223640536|emb|CAX44790.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 399

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 10/126 (7%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D+YD + +      + ++   TK     L + + ++N  V  MH ++K  ER  I+ + R
Sbjct: 258 DLYDNLTIT-----QAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNEFR 312

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VL+  ++   G+D+ +  LV   D         K + I  IGR+ R       + 
Sbjct: 313 RGNSRVLISTDVWARGIDVQQVSLVINYD-----LPTDKENYIHRIGRSGRFGRKGTAIN 367

Query: 690 ADTITK 695
             T   
Sbjct: 368 LITKDD 373


>gi|195381768|ref|XP_002049617.1| GJ21693 [Drosophila virilis]
 gi|194144414|gb|EDW60810.1| GJ21693 [Drosophila virilis]
          Length = 784

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 97/262 (37%), Gaps = 31/262 (11%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIR-SARTQVE 569
           C    T++ SAT  S +++    + +++ ++            L    + IR       E
Sbjct: 333 CKTRQTMLFSAT-MSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDRE 391

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   +          ++ V TK+ A  L   L    +R   +H  +   +R+E ++  +
Sbjct: 392 PILASLICRTFHDH-CMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFK 450

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
             + DVL+  ++   GLDI     V            +    I  +GR AR   + +   
Sbjct: 451 EEQIDVLIATDVAARGLDIVGVKTVINF-----VMPITTEHYIHRVGRTARAGRAGI--- 502

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK----HNINPQSVKEKIMEVIDPILLEDAATTN 745
                 S+ LA  E  R+  K +  N +    + I P  + EK    +  +  E     +
Sbjct: 503 ------SVSLA-GEKERKIVKDIIKNAESSVKNRIIPPEIIEKYRNKLTALEPEIQNILD 555

Query: 746 ISIDAQQLSLSKKKGKAHLKSL 767
                +QL+ ++++     + L
Sbjct: 556 EEQAERQLAKTEQQLSKTERKL 577


>gi|182416631|ref|ZP_02948044.1| cold-shock deAd box protein a [Clostridium butyricum 5521]
 gi|237668564|ref|ZP_04528548.1| putative helicase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182379523|gb|EDT77009.1| cold-shock deAd box protein a [Clostridium butyricum 5521]
 gi|237656912|gb|EEP54468.1| putative helicase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 369

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 70/194 (36%), Gaps = 17/194 (8%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART--------QVEDV 571
             +   +  SAT  S   +     + +  I    +    V++ S +         Q  D 
Sbjct: 172 SKKKQMLCFSATMDSEVKKLAYRYMNDPAI--ISVKKEEVDMHSIKQFVVETTDRQKRDA 229

Query: 572 YDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
             ++          ++   TKR A+DL   +  R      +HS++   +R  I++  R  
Sbjct: 230 LCKVLD-EDNPFMAIIFCRTKRRADDLETVMATRKYNCAKIHSDIAQNKRERIMKSFREA 288

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYA 690
           K   L+  ++   GLDI     +   D        +  S +  IGR  R   S +  ++ 
Sbjct: 289 KLQYLIATDVAARGLDITGVTHIYNYD-----IPETPESYVHRIGRTGRAGESGITCMFV 343

Query: 691 DTITKSIQLAIDET 704
           D   K     I++T
Sbjct: 344 DPKNKRALEEIEDT 357


>gi|148679535|gb|EDL11482.1| mCG133615, isoform CRA_b [Mus musculus]
          Length = 487

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 70/189 (37%), Gaps = 21/189 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 289 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNREEKFQ 342

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 343 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 402

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 403 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 461

Query: 690 ADTITKSIQ 698
                 S+ 
Sbjct: 462 MVDSKHSMN 470


>gi|114644988|ref|XP_509035.2| PREDICTED: probable ATP-dependent RNA helicase DDX23 isoform 2 [Pan
           troglodytes]
          Length = 820

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 591 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 650

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 651 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 708

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 709 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 763

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 764 AITFLTKEDSAVFYELKQAILES 786


>gi|109096393|ref|XP_001104339.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like isoform 5
           [Macaca mulatta]
          Length = 820

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 591 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 650

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 651 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 708

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 709 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 763

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 764 AITFLTKEDSAVFYELKQAILES 786


>gi|224127608|ref|XP_002320116.1| predicted protein [Populus trichocarpa]
 gi|222860889|gb|EEE98431.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 12/137 (8%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  D R G    LV  +L   G
Sbjct: 352 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG 411

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +DI    +V   D     F ++  + +  +GR+ R  +  + +   T      L      
Sbjct: 412 IDIQAVNVVINFD-----FPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNL------ 460

Query: 706 RRREKQLEHNKKHNINP 722
             R +Q    +   I P
Sbjct: 461 -YRIEQELGTEIKQIPP 476


>gi|194208792|ref|XP_001916617.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19B isoform 2
           [Equus caballus]
          Length = 414

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 204 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNRDEKFQ 257

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 258 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 317

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 318 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 376

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 377 MVDSKHSMNIL----NR---IQEHFNKK 397


>gi|149377730|ref|ZP_01895465.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
 gi|149358015|gb|EDM46502.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
          Length = 503

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 63/191 (32%), Gaps = 30/191 (15%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQII------RPTGLVDPPVEIRSARTQVEDVYD 573
                T +  AT    E E      + Q +      R    +   +E+            
Sbjct: 193 KKVAQTYLRDATEVKIESETRTVERISQFVLPVYAERKLDALTRILEVEPVDG------- 245

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
                       ++ V TK     L E L  R   V  ++ ++   +R + + DL+ GK 
Sbjct: 246 -----------TIIFVRTKAETTLLAEKLSARGHAVAPLNGDLNQRQREQTVEDLKRGKK 294

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADT 692
           D++V  ++   GLD+P    V   D           + I  +GR  R     K IL    
Sbjct: 295 DIIVATDVAARGLDVPRITHVINYDV-----PYDTEAYIHRVGRTGRAGREGKAILLVTP 349

Query: 693 ITKSIQLAIDE 703
             +S    ++ 
Sbjct: 350 RERSWLRTLER 360


>gi|126138430|ref|XP_001385738.1| RNA helicase of DEAD box family [Scheffersomyces stipitis CBS 6054]
 gi|146286118|sp|A3LWX3|DHH1_PICST RecName: Full=ATP-dependent RNA helicase DHH1
 gi|126093016|gb|ABN67709.1| RNA helicase of DEAD box family [Scheffersomyces stipitis CBS 6054]
          Length = 509

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 64/182 (35%), Gaps = 27/182 (14%)

Query: 517 EWNCLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRS 563
           E+      +++ SAT                +E+     + +  I +    V+       
Sbjct: 198 EFFPKNRQSLLFSATFPLAVKSFMDKHLNKPYEINLMDELTLRGITQYYAFVEEK----- 252

Query: 564 ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
              Q     + +    Q    I +   +    E L + + E      Y H+++    R +
Sbjct: 253 ---QKLHCLNTLFSKLQINQSI-IFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNK 308

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
           +  + R GK   LV  +LL  G+DI    +V   D     F ++  + +  IGR+ R  +
Sbjct: 309 VFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFD-----FPKTAETYLHRIGRSGRFGH 363

Query: 684 SK 685
             
Sbjct: 364 LG 365


>gi|71018491|ref|XP_759476.1| hypothetical protein UM03329.1 [Ustilago maydis 521]
 gi|46098964|gb|EAK84197.1| hypothetical protein UM03329.1 [Ustilago maydis 521]
          Length = 534

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 68/197 (34%), Gaps = 22/197 (11%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
            +E+     + +  + +    V+   ++           + +    Q    I +   +  
Sbjct: 345 PYEINLMDELTLRGVTQYYAFVEERQKVH--------CLNTLFSKLQINQSI-IFCNSTN 395

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L + + E      Y H+++    R  +  D R G    LV  +LL  G+DI    +
Sbjct: 396 RVELLAKKITELGYSCFYSHAKMLQAHRNRVFHDFRNGACRNLVCSDLLTRGIDIQAVNV 455

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLE 713
           V   D     F ++  + +  IGR+ R  +  + +   T      L   E     E Q  
Sbjct: 456 VINFD-----FPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIQ-- 508

Query: 714 HNKKHNINPQSVKEKIM 730
                   P ++ +++ 
Sbjct: 509 ------PIPSNIDKRLR 519


>gi|329941644|ref|ZP_08290909.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329299361|gb|EGG43261.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 480

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 64/198 (32%), Gaps = 17/198 (8%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D Y      A +  R+LL + TK   + LT +L    +    +HS     +R   +   +
Sbjct: 261 DRYAVTTEIAARDGRVLLFLDTKHGVDQLTRHLRANGVAAAALHSGKSQPQRTGTLARFK 320

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G    LV  N+   GL I +  LV  +D             +   GR AR   S  ++ 
Sbjct: 321 DGGITALVATNVAARGLHIDDLDLVINVDP-----ATDPKDYLHRAGRTARAGRSGTVVT 375

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISID 749
                +           RRE          + P+  K +  E +   +      +   +D
Sbjct: 376 LVLSGQ-----------RRETSQVM-TDAGVTPEVTKVRSGEAVLSRITGARTPSGKPLD 423

Query: 750 AQQLSLSKKKGKAHLKSL 767
               +   K      + L
Sbjct: 424 RTAAATGPKNHNKPFRGL 441


>gi|298695355|gb|ADI98577.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 487

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 15/193 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTG--LVDPPVE----IRSARTQVEDVYDEIN 576
            T++ SAT P + +    Q +   +II+     + DP +E    I     + +   + ++
Sbjct: 158 QTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLD 217

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++L
Sbjct: 218 --VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINIL 275

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLDI     V   D       +   S    IGR  R     + + + + I  
Sbjct: 276 VATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 330

Query: 696 SIQLAIDETTRRR 708
                I++   R+
Sbjct: 331 DYIRQIEDANGRK 343


>gi|256269521|gb|EEU04808.1| Irc3p [Saccharomyces cerevisiae JAY291]
          Length = 689

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 6/128 (4%)

Query: 571 VYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           +   ++   ++ L+  LL  + K   + L +   +  I   Y+ S+ K +ER  II+  +
Sbjct: 266 LKTYLHKKQEKSLKSTLLFGVDKAHVQSLHKLFKDNGINTDYVTSDTKQIERDSIIQKFK 325

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+ +VL+   +  EG D+P    + +    K     S++ LIQ IGR  R  +SK   +
Sbjct: 326 NGETEVLMNCGIFTEGTDMPNIDCILLCRPTK-----SRSLLIQMIGRGLRLHHSKDHCH 380

Query: 690 ADTITKSI 697
                 + 
Sbjct: 381 IIDFIGAS 388



 Score = 45.5 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR----------PAIVMAPN 202
           Q  AI   +  I    K   +   TG GKT   + +I  +++           ++++   
Sbjct: 37  QQDAIDACVNSIRQGTKRIGVSLATGGGKTVIFSNLINQLRQNYFKERQGNFKSLILVHR 96

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           + LA Q  +  K  FP   V   +  YD
Sbjct: 97  RELALQATATLKKIFPDLKVHIEMGKYD 124


>gi|254571881|ref|XP_002493050.1| ATP-dependent RNA helicase of the DEAD box family [Pichia pastoris
           GS115]
 gi|238032848|emb|CAY70871.1| ATP-dependent RNA helicase of the DEAD box family [Pichia pastoris
           GS115]
 gi|328352938|emb|CCA39336.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435]
          Length = 544

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 87/256 (33%), Gaps = 46/256 (17%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIRSARTQVEDVYDE 574
              + SAT    E+E+    ++++ IR          T +    V   S   ++  +   
Sbjct: 296 QMSIYSAT-IPEEVEELAHSVMKEPIRINIGRKEAANTQIKQKVVYTGSEEGKLVALRQM 354

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +   ++    +L+ + +   A+ L   L    + V  +HSE   ++R  ++   + G   
Sbjct: 355 VQN-SEFKPPVLIFLQSITRAKALFHELIYDKMNVDVIHSERTQIQRDRVVERFQKGDIW 413

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VL+   ++  G+D     LV   D        S  + +  IGR  R  ++   +   T  
Sbjct: 414 VLICTEVIGRGIDFKGINLVINYDV-----PTSAEAYVHRIGRTGRAGHTGSAVTFFTKE 468

Query: 695 KSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLS 754
            S+                               I  +I+ +   +      S    +  
Sbjct: 469 DSL------------------------------AIKPIINVLKQSEQNNGYASWMETEDK 498

Query: 755 LSKKKGKAHLKSLRKQ 770
           LS+K+     K + ++
Sbjct: 499 LSEKELTKIKKGVERE 514


>gi|209876956|ref|XP_002139920.1| ATP-dependent RNA helicase [Cryptosporidium muris RN66]
 gi|209555526|gb|EEA05571.1| ATP-dependent RNA helicase, putative [Cryptosporidium muris RN66]
          Length = 406

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 62/190 (32%), Gaps = 15/190 (7%)

Query: 517 EWNCLRPTTIVVSAT-PG------SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           E+       ++ SAT P          L     I +   +   G+      +     Q  
Sbjct: 201 EFLPKERQILLYSATFPVTVKGFKDKYLSNAHEINLMDELTLKGVTQYYAFV--EEKQKL 258

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
              + +    Q     ++   +    E L + + E      Y+H+ +    R  +  D R
Sbjct: 259 HCLNTLFCKLQINQ-AIIFCNSVARVELLAKKITELGSSCFYIHARMLQSHRNRVFHDFR 317

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G    LV  +L+  G+DI    +V   D  K        + +  IGR+ R  +  + + 
Sbjct: 318 NGACRCLVSSDLITRGIDIQSVNVVINFDFPKYS-----ETYLHRIGRSGRFGHLGLAIN 372

Query: 690 ADTITKSIQL 699
             T      L
Sbjct: 373 LITYEDRYNL 382


>gi|10039333|dbj|BAB13309.1| PL10-related protein PoPL10 [Ephydatia fluviatilis]
          Length = 491

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 5/101 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V TK+  + L  +LY +      +H +    ER + +   R  +  +LV   +   
Sbjct: 293 TLVFVETKKNCDALDNFLYTQGYSCTCIHGDRTQGEREQALHSFRTARMPILVATAVAAR 352

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            LDIP    V   D   +         +  IGR  +  N  
Sbjct: 353 SLDIPNVKHVVNFDMPAD-----IEEYVHRIGRTGKVGNLG 388


>gi|148264031|ref|YP_001230737.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146397531|gb|ABQ26164.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 438

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 13/188 (6%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE--IRSARTQVEDVY--DEINL 577
           +  T++ SAT  S  ++Q    +++Q  R            +  A  QVE     + ++ 
Sbjct: 179 KRQTMLFSAT-YSQSIKQLADELLDQPRRIEVARRNIAADAVTQAVYQVEKSRKREMLSF 237

Query: 578 AAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              +G   ++L+   T+  A+ LTE L    I+   +HS      R   + + + G+F V
Sbjct: 238 LISKGNWNQVLVFARTRYGADKLTEELLYDGIKAAAIHSNKSQSIRTRTLAEFKRGEFRV 297

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLDI     V   D       +     +  IGR  R   + V L   +  +
Sbjct: 298 LVATDVAARGLDIERLPHVVNYD-----LPQVPEDYVHRIGRTGRAGENGVALSLVSHEE 352

Query: 696 -SIQLAID 702
            S+  AI+
Sbjct: 353 QSLLQAIE 360


>gi|332186948|ref|ZP_08388689.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
 gi|332012958|gb|EGI55022.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
          Length = 459

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 67/194 (34%), Gaps = 11/194 (5%)

Query: 521 LRPTTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVE--IRSARTQVEDVYDEI 575
            +  T+  SAT      +L          + + P       VE  +     Q +     I
Sbjct: 178 RKRQTLFFSATMPAAIRDLADKFLDNPATVSVTPVSTTAERVEQSVTFVTQQEKQALLTI 237

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            LA       L+   TK  A+ + + L    I    +H      +R   + + R G+  V
Sbjct: 238 LLADPAIELALVFTRTKHGADRVVKLLAGNGIAANAIHGNKSQGQRERALGEFRSGQTRV 297

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   G+DIP    V   +             +  IGR AR   S   I +     
Sbjct: 298 LVATDIAARGIDIPGVSHVFNFE-----LPNVAEQYVHRIGRTARAGRSGLAIAFCAEDE 352

Query: 695 KSIQLAIDETTRRR 708
           +     I++ TR++
Sbjct: 353 RPYLKDIEKLTRQK 366


>gi|331011364|gb|EGH91420.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 442

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 11/159 (6%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D++  +    + G  +L+   T+   + L + L    +    +H +     R   +   +
Sbjct: 233 DLFIHLMKKHRWGQ-VLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFK 291

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVIL 688
             +  +LV  ++   GLDI +   V  LD             I  IGR  R     + I 
Sbjct: 292 SNEVKILVATDVAARGLDIDDLPTVVNLDLPIV-----AEDYIHRIGRTGRAGLTGEAIS 346

Query: 689 YADTITKSIQLAIDETTRR---REKQLEHNKKHNINPQS 724
                   +  AI+  TR+   R+++ +   +H   P +
Sbjct: 347 LVCADEVELLSAIEVLTRQTLERKEEQDFEPEHR-VPTT 384


>gi|315635838|ref|ZP_07891100.1| transcription-repair coupling factor [Arcobacter butzleri JV22]
 gi|315479817|gb|EFU70488.1| transcription-repair coupling factor [Arcobacter butzleri JV22]
          Length = 995

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 79/217 (36%), Gaps = 26/217 (11%)

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
           E   +   ++  N    AQ+ S+  ++               ++P         + +   
Sbjct: 14  EKRLKECQLLIVNDDRQAQIASDIVSYLG-------------FKPFLLADFRANFGDDLL 60

Query: 250 SINEQIDRMRHSATRSL-----LERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSV 303
           S +E++    H  T++L      ++ D I++S +  I Y +   +        +   D +
Sbjct: 61  SFSEEL----HEITKTLGDFYSYKKQDKILISPIRTISYPL--PKEKCFESFTINFADRL 114

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
             +EL S L    Y   DI    G   + GD ++I P    D  +RVS+F +++E I +F
Sbjct: 115 NLEELKSKLYNWGYYFVDIVTSEGEVSLRGDILDICP-LGSDFGYRVSLFDDEVESIRKF 173

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
                +  +          +       T     + I+
Sbjct: 174 DIEDQKSSKEEIESFSINPAFLALDEATFEEINEQIQ 210



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 8/110 (7%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           NI++  +HS++K  +  +II      +FD+L+  +++  G+ +P    + I  AD+ G  
Sbjct: 718 NIKIDIIHSQIKPEQAEKIIEAFENKEFDILLATSIVESGIHLPNANSIIIDGADRFGI- 776

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
                L Q  GR  R+       Y        + +I +   +R   LE N
Sbjct: 777 ---ADLHQLRGRVGRSNKEGYCYYVVED----KKSITDDAVKRLVALESN 819



 Score = 37.8 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 4/114 (3%)

Query: 108 RLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSR 167
           +L    N ++K            IN   K +  FQ    +  + DQ  +I ++   + S 
Sbjct: 445 KLFAIANDIIKLAAARELVNGIKINTDKKVLEDFQKSAGFEYTKDQKRSIKEIFDDLSSG 504

Query: 168 E-KVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFF 217
               +LL G  G GKT      + A+       I + P  +LA Q Y   +   
Sbjct: 505 RVMDRLLSGDVGFGKTEVAMNALLAVILDGYQTIFVCPTTLLATQHYHSIQKRL 558


>gi|313901321|ref|ZP_07834808.1| helicase C-terminal domain protein [Clostridium sp. HGF2]
 gi|312953929|gb|EFR35610.1| helicase C-terminal domain protein [Clostridium sp. HGF2]
          Length = 384

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 16/194 (8%)

Query: 522 RPTTIVVSATPGSWEL----EQCQGIIVEQIIRPTGLVDPPVEIRSAR--TQVEDVYDEI 575
               + ++ATP   E+    +Q +  +VE   RP G      ++++A    Q+  +   +
Sbjct: 191 IGNRLYLTATP-DEEMLSDVKQGKLQMVELFQRPHGYPLIVPDVKAALPSIQLYQLIRFL 249

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               ++  + L+ V T  +AE ++ +L    I  R      KT ++ +I++     +++ 
Sbjct: 250 KRQKKEAAQTLVFVPTIALAEQMSRWLR---IVFRCTSFTSKTKDKEKILKRFHEKRYEC 306

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN---SKVILYADT 692
           L+   +L  G+ I     V I  AD   F  ++ SLIQ IGR  RN+     K +     
Sbjct: 307 LIATTVLERGITIKGV-HVVIYHADHPVF--NEASLIQMIGRVGRNIEMPTGKGLFLCTR 363

Query: 693 ITKSIQLAIDETTR 706
            T+ I+  I    R
Sbjct: 364 KTRDIERCIQALQR 377


>gi|306833030|ref|ZP_07466162.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
 gi|304424929|gb|EFM28063.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
          Length = 526

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 11/196 (5%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT       +        E + +    L    V+    R + +D +D +     
Sbjct: 176 QTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMD 235

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD +    D+LV 
Sbjct: 236 VDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R       I +        
Sbjct: 296 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGY 350

Query: 698 QLAIDETTRRREKQLE 713
              I++ T++R K L+
Sbjct: 351 LSIIEKLTKKRMKGLK 366


>gi|297742547|emb|CBI34696.3| unnamed protein product [Vitis vinifera]
          Length = 438

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 12/137 (8%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +    E L + + E      Y+H+++    R  +  D R G    LV  +L   G
Sbjct: 305 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG 364

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
           +DI    +V   D     F ++  + +  +GR+ R  +  + +   T      L      
Sbjct: 365 IDIQAVNVVINFD-----FPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNL------ 413

Query: 706 RRREKQLEHNKKHNINP 722
             R +Q    +   I P
Sbjct: 414 -YRIEQELGAEIKQIPP 429


>gi|238878821|gb|EEQ42459.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 646

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 98/273 (35%), Gaps = 29/273 (10%)

Query: 464 YIPEDS-LLFVDESHVTI----PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           + P+D   + +DE H  +     +I   ++ D          GF       ++ +    +
Sbjct: 144 FNPDDFKTIIIDECHHAVAPTYQKILKHFKADTKNTNINV-IGFTATLARADKQMLKAVF 202

Query: 519 NCLRPT----TIVVSATPGSWE--------LEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
           + +       T++ +    S++        L      +  +   P  L +  ++      
Sbjct: 203 DRIAFQRSLATMIFNKELASFKASKLYFKRLNLSDVKMKGKDYDPKALYNAVLK----AG 258

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
             E +        ++    L+  +      ++   L ++ +  RY+ S+    ER  I+ 
Sbjct: 259 VNEHLLLAYMELEKEYKSTLVFCINVEHCREVCVLLQKQGVDARYVTSKTSNSERKTIVE 318

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D + GKF VL  + +  EG DIP    + +    K     SK  +IQ IGR  R    K 
Sbjct: 319 DFKQGKFPVLCNVTVFAEGTDIPNIDSIILARPTK-----SKPLMIQMIGRGLRLHKEKS 373

Query: 687 ILYADTITKSIQLAIDETT--RRREKQLEHNKK 717
             +   +   +   ++       ++ Q++  K 
Sbjct: 374 HCHVVDLVGIMDENLELKAILEGKQLQMKKAKD 406



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI---EAMQRPAIVMAPNKILAAQL 209
           Q  AI  +L+   S  K Q +   TGSGKT   + +I   +      +V+   + L AQ 
Sbjct: 40  QQEAIDSILEASESGVKRQAIEMATGSGKTVVFSHLIPLLKGKGTKTLVLEHTQELIAQS 99

Query: 210 YSEFKNFFPHNAV 222
           Y +     P   V
Sbjct: 100 YDKITRINPDLRV 112


>gi|300779365|ref|ZP_07089223.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
 gi|300504875|gb|EFK36015.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
          Length = 434

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 67/189 (35%), Gaps = 31/189 (16%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
           R  T+  SAT PG  E+++    I+   ++        VE+    +  + +   +    +
Sbjct: 177 RRQTLFFSATMPG--EIQKLANSILNNPVK--------VEVTPVSSTADTIKQSVYFVEK 226

Query: 581 QGL--------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
                             +L+   TK  A+ ++  L + NI    +H       R   + 
Sbjct: 227 DNKLNLLSHILKNDISDSVLVFARTKHGADKISRKLQKDNISAEAIHGNKSQNARQNALN 286

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + + GK  VLV  ++   G+DI E   V   +           + +  IGR  R      
Sbjct: 287 NFKSGKTRVLVATDIAARGIDIDELKFVINFE-----LSDVSETYVHRIGRTGRAGAEGT 341

Query: 687 -ILYADTIT 694
            I + D + 
Sbjct: 342 SISFVDGLD 350


>gi|254520792|ref|ZP_05132848.1| DEAD-box ATP dependent DNA helicase [Clostridium sp. 7_2_43FAA]
 gi|226914541|gb|EEH99742.1| DEAD-box ATP dependent DNA helicase [Clostridium sp. 7_2_43FAA]
          Length = 526

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 69/187 (36%), Gaps = 13/187 (6%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TK+  ++L E +  R   V  MH ++    R+  ++  + G  + LV  ++   
Sbjct: 245 AIIFCRTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSLNYLVATDVAAR 304

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-SIQLAIDE 703
           G+D+     V   D       +   S +  IGR  R     +     +  + S+   I  
Sbjct: 305 GIDVEGITHVINYD-----LPQDVESYVHRIGRTGRANREGIAYSLVSPKEYSMLKQIKS 359

Query: 704 TTR----RREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKK 759
            T+    R+      N   N   +S+ E +   I+           ++ +  Q   S + 
Sbjct: 360 VTKSDISRKNIPTV-NDIFNSKSKSILEDVTNTINDSDYSKF--IPVATELTQKYDSVEI 416

Query: 760 GKAHLKS 766
             A +K+
Sbjct: 417 IAALIKN 423


>gi|115352130|ref|YP_773969.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115282118|gb|ABI87635.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 512

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 67/190 (35%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I ++Q +     +   V     R   + + D + 
Sbjct: 238 QTMLFSATLDGKIGSLTGRLLKDPERIEIQQRLESRTNIAQTVHYVDDRDHKDRLLDHLL 297

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  + ++   TK  A+ L   L +       +H ++    R   IR LR  +  VL
Sbjct: 298 -RDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARNRTIRALRERRVRVL 356

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 357 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 409

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 410 EQGALKRIER 419


>gi|329919619|ref|ZP_08276608.1| DEAD-box ATP-dependent RNA helicase CshB family protein
           [Lactobacillus iners SPIN 1401G]
 gi|328937424|gb|EGG33846.1| DEAD-box ATP-dependent RNA helicase CshB family protein
           [Lactobacillus iners SPIN 1401G]
          Length = 389

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 114/317 (35%), Gaps = 42/317 (13%)

Query: 392 LNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTG 451
               +     EL  +L ++ +  +L +A  L   I Y     + T   +   N +  L  
Sbjct: 44  TQAVITAPSRELASQLYKVAR--QLRDAAELNISIEYLGGGNDRTRQLEKASNNAPQLII 101

Query: 452 RNPGEPPPTLFEY-------IPEDSLLFVDESHVTIPQISGMYRGD-FHRKATLAEYGFR 503
             PG     L ++       + + S   +DE+ +T+         D   R  T    G  
Sbjct: 102 ATPGR----LHDFAIKKIIKLDQVSTFIIDEADMTLDMGFLNQMDDIMTRLGTNVTIG-- 155

Query: 504 LPSCMDNRPLRFEEW-NCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR 562
             +     P++ E++ N        V              I    +I PT + +  +++ 
Sbjct: 156 --AFSATIPVKLEQFLNKYMQHPEFV-------------VIDNPSVISPT-VANDLIDVG 199

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
           S     +D+   +     Q     +   TK+  ++L  YL ++ ++V  +H  +   ER 
Sbjct: 200 SKDK--KDILYTLL-TMGQPYLAFVFANTKKTVDELATYLDQKGLKVAKIHGGITERERK 256

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV 682
             IR +R G++  ++  +L   G+DIP   LV   +            +I  IGR  RN 
Sbjct: 257 RTIRQVREGQYQYVIASDLAARGIDIPGISLVINYE-----IPTDLEFVIHRIGRTGRN- 310

Query: 683 NSKVILYADTITKSIQL 699
           N           + +Q 
Sbjct: 311 NLYGHAITLIHEEEMQQ 327


>gi|300690871|ref|YP_003751866.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           PSI07]
 gi|299077931|emb|CBJ50571.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           PSI07]
          Length = 495

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 79/241 (32%), Gaps = 37/241 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         V +  V + Q+  +   +  R     + GF LP       L   
Sbjct: 148 TPGRLLD--------HVQQRSVNLSQVRMLVLDEADRM---LDMGF-LPDLQRIINLLPA 195

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVED-- 570
                   T++ SAT      +     +      ++ R     D    +R     V D  
Sbjct: 196 H-----RQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADN---VRQVIYTVPDGH 247

Query: 571 ----VYDEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
               +   +   A+QGL  + ++   +K     L   L    I    +H +    ER++ 
Sbjct: 248 KQAALVHLLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQT 307

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +   + G  DVLV  ++   GLDI +   V   D        +    +  IGR  R   S
Sbjct: 308 LEAFKQGTVDVLVATDVAARGLDISQMPCVINFD-----LPFNAEDYVHRIGRTGRAGAS 362

Query: 685 K 685
            
Sbjct: 363 G 363


>gi|227524866|ref|ZP_03954915.1| possible ATP-dependent DNA helicase/translocase [Lactobacillus
           hilgardii ATCC 8290]
 gi|227087972|gb|EEI23284.1| possible ATP-dependent DNA helicase/translocase [Lactobacillus
           hilgardii ATCC 8290]
          Length = 142

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 10/145 (6%)

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            IN   +Q  R LL V   +    ++  L + NI   Y+       +R+E +  +R    
Sbjct: 1   MINRLVKQKQRFLLFVPRIKDLTLVSNALEKANINCTYLTVYSADPQRLEKVTAMRSQSV 60

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK---VILYA 690
           D L+   +L  G+  P    V +L AD E F  S ++L+Q  GR  RN       VILY 
Sbjct: 61  DFLITTTILERGVTFPGID-VMVLKADDEVF--STSALVQIAGRVGRNSARPTGQVILYC 117

Query: 691 DTITKSIQ---LAIDETTRR-REKQ 711
           +T +K+I+     I E  R+ RE +
Sbjct: 118 ETKSKTIKSCDRQIKEMNRKAREIK 142


>gi|194216191|ref|XP_001497891.2| PREDICTED: similar to mCG15236 [Equus caballus]
          Length = 563

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 79/201 (39%), Gaps = 24/201 (11%)

Query: 496 TLAEYGF---RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
            + + GF    +   +D RP R          T++ SAT         Q  + E +I   
Sbjct: 315 KMLDMGFEPQIMKILLDVRPDR---------QTVMTSATWPYSVRRLAQSYLKEPMIVYV 365

Query: 553 GLVDPP----VEIRSARTQVEDVYDEINLAAQQ---GLRILLTVLTKRMAEDLTEYLYER 605
           G +D      V+     T  E+    I    +      ++++ V  K +A+ L+  L  +
Sbjct: 366 GTLDLVAVSTVKQNIIVTTEEEKRSHIQTFLESMSPKDKVIVFVSRKAVADHLSSDLILQ 425

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           +I V  +H   +  +R   + + + GK  +L+  +L   GLD+ +   V   D     F 
Sbjct: 426 HISVESLHGNREQSDRERALENFKTGKVRILIATDLASRGLDVHDVTHVYNYD-----FP 480

Query: 666 RSKTSLIQTIGRAARNVNSKV 686
           R+    +  +GR  R   + V
Sbjct: 481 RNIEEYVHRVGRTGRAGRTGV 501


>gi|194863559|ref|XP_001970500.1| GG23340 [Drosophila erecta]
 gi|190662367|gb|EDV59559.1| GG23340 [Drosophila erecta]
          Length = 782

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 97/262 (37%), Gaps = 31/262 (11%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIR---------PTGLVDPPVEIR-SARTQVE 569
           C    T++ SAT  S +++    + +++ ++            L    + IR       E
Sbjct: 333 CKTRQTMLFSAT-MSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDRE 391

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   +          ++ V TK+ A  L   L    +R   +H  +   +R+E ++  +
Sbjct: 392 PILASLICRTFHDH-CMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFK 450

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
             + DVL+  ++   GLDI     V            +    I  +GR AR   + +   
Sbjct: 451 EEQIDVLIATDVAARGLDIVGVKTVINF-----VMPITTEHYIHRVGRTARAGRAGI--- 502

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK----HNINPQSVKEKIMEVIDPILLEDAATTN 745
                 S+ LA  E  R+  K +  N +    + I P  + EK    +  +  E     +
Sbjct: 503 ------SVSLA-GEKERKIVKDIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILD 555

Query: 746 ISIDAQQLSLSKKKGKAHLKSL 767
                +QL+ ++++     + L
Sbjct: 556 EEQAERQLAKTEQQLSKTERKL 577


>gi|157374029|ref|YP_001472629.1| ATP-dependent RNA helicase SrmB [Shewanella sediminis HAW-EB3]
 gi|157316403|gb|ABV35501.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 408

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 77/219 (35%), Gaps = 19/219 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPP-------VEIRSARTQVEDVYD 573
           R  T++ SAT  GS        ++ + +                 + I   +    ++  
Sbjct: 178 RKQTMLFSATLEGSDVGRFSHQLLTDPVKVEAEAPRSEKAKIHQWIHIADNKDHKFNLLC 237

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            I    +   R ++ V T+     L   L +  I   +M  +++  +R + +     G+ 
Sbjct: 238 SILQQEETK-RAIVFVKTREAVASLEGLLQKAGIPCSFMRGDMEQKQRFQALGRFTKGEV 296

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL----- 688
           +VL+  ++   G+D+ +   V   D  +     S  + +  IGR  R       +     
Sbjct: 297 NVLLATDVAARGIDVDDITHVINFDMPR-----SADTYVHRIGRTGRAGAKGTAISLVEA 351

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE 727
           +   +   I+  +D+  +RR  +    K     P    +
Sbjct: 352 HDIRVVGKIERYMDQPLKRRFIKDLRPKNKEAKPPGKNK 390


>gi|170733402|ref|YP_001765349.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169816644|gb|ACA91227.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 514

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 67/190 (35%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L   + I ++Q +     +   V     R   + + D + 
Sbjct: 238 QTMLFSATLDGKIGSLTSRLLRDPERIEIQQRLESRANIAQTVHYVDDRDHKDRLLDHLL 297

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  + ++   TK  A+ L   L +       +H ++    R   IR LR  +  VL
Sbjct: 298 -RDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARNRTIRALRERRVRVL 356

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S + +    +  +
Sbjct: 357 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGIAVSL--VHHA 409

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 410 EQGALKRIER 419


>gi|115644373|ref|XP_795982.2| PREDICTED: similar to putative RNA helicase (DEAD box)
           [Strongylocentrotus purpuratus]
 gi|115970054|ref|XP_001184061.1| PREDICTED: similar to putative RNA helicase (DEAD box)
           [Strongylocentrotus purpuratus]
          Length = 386

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 6/115 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + D I+ A    L  L+ V TK+ A+ L E+LY    +   +H +    ER + ++  R 
Sbjct: 155 LLDLISAAGADSL-TLVFVETKKGADSLEEFLYREKFQATSIHGDRSQREREDALKTFRT 213

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           G+  +LV   +   GLDI     V   D             +  IGR  R  N  
Sbjct: 214 GRTPILVATAVAARGLDIYNVKHVINFD-----LPTDIEEYVHRIGRTGRVGNVG 263


>gi|297610744|ref|NP_001065000.2| Os10g0503700 [Oryza sativa Japonica Group]
 gi|255679537|dbj|BAF26914.2| Os10g0503700 [Oryza sativa Japonica Group]
          Length = 521

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT             P  + +     + ++ I +    V+   ++         
Sbjct: 322 QLLMFSATFPVTVKDFKEKYLPRPYVINLMDELTLKGITQYYAFVEERQKVH-------- 373

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + + L  Q    I +   +    E L + + E      Y+H+++    R  +  D R 
Sbjct: 374 CLNTLFLKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 432

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+ I    +V   D     F ++  + +  +GR+ R  +  + +  
Sbjct: 433 GACRNLVCTDLFTRGIGIQAVNVVINFD-----FPKTSETYLHRVGRSGRFGHLGLAVNL 487

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            T      L        R +Q    +   I PQ
Sbjct: 488 ITYEDRFNL-------YRIEQELGTEIKTIPPQ 513


>gi|71734815|ref|YP_276470.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555368|gb|AAZ34579.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 450

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 11/159 (6%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D++  +    + G  +L+   T+   + L + L    +    +H +     R   +   +
Sbjct: 241 DLFIHLMKKHRWGQ-VLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFK 299

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVIL 688
             +  +LV  ++   GLDI +   V  LD             I  IGR  R     + I 
Sbjct: 300 SNEVKILVATDVAARGLDIDDLPTVVNLDLPIV-----AEDYIHRIGRTGRAGLTGEAIS 354

Query: 689 YADTITKSIQLAIDETTRR---REKQLEHNKKHNINPQS 724
                   +  AI+  TR+   R+++ +   +H   P +
Sbjct: 355 LVCADEVELLSAIEVLTRQTLERKEEQDFEPEHR-VPTT 392


>gi|83746502|ref|ZP_00943553.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
 gi|83726833|gb|EAP73960.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
          Length = 566

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 80/241 (33%), Gaps = 37/241 (15%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +         V +  V + Q+  +   +  R     + GF LP       L   
Sbjct: 219 TPGRLLD--------HVQQRSVNLSQVRMLVLDEADRM---LDMGF-LPDLQRIINLLPA 266

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVED-- 570
                   T++ SAT      +     +      ++ R     D    +R     V D  
Sbjct: 267 H-----RQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADN---VRQVIYTVPDGH 318

Query: 571 ----VYDEINLAAQQGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
               +   +   A+QGL  + ++   +K     L   L    I    +H +   +ER++ 
Sbjct: 319 KQAALVHLLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQT 378

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +   + G  DVLV  ++   GLDI +   V   D        +    +  IGR  R   S
Sbjct: 379 LEAFKQGTVDVLVATDVAARGLDISQMPCVINFD-----LPFNAEDYVHRIGRTGRAGAS 433

Query: 685 K 685
            
Sbjct: 434 G 434


>gi|282917430|ref|ZP_06325183.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus D139]
 gi|282318632|gb|EFB48989.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus D139]
          Length = 506

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 15/193 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTG--LVDPPVE----IRSARTQVEDVYDEIN 576
            T++ SAT P + +    Q +   +II+     + DP +E    I     + +   + ++
Sbjct: 177 QTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLD 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++L
Sbjct: 237 --VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINIL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLDI     V   D       +   S    IGR  R     + + + + I  
Sbjct: 295 VATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349

Query: 696 SIQLAIDETTRRR 708
                I++   R+
Sbjct: 350 DYIRQIEDANGRK 362


>gi|148982431|ref|ZP_01816753.1| ATP-dependent RNA helicase SrmB [Vibrionales bacterium SWAT-3]
 gi|145960483|gb|EDK25855.1| ATP-dependent RNA helicase SrmB [Vibrionales bacterium SWAT-3]
          Length = 421

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 75/212 (35%), Gaps = 21/212 (9%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSAR--TQVEDVYDEINLA- 578
           R  T++ SAT    E +  +G   + +  P  + D    +R  +  TQ     D      
Sbjct: 180 RKQTLLFSAT---LEGKGVEGFTEDLLNNPAEI-DAKSSLRERKKITQWYHRADTAEHKL 235

Query: 579 -------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                   ++  R ++ + T+    DL   L    I   ++  E+    R   I   R G
Sbjct: 236 DLLKHIITKEAERSIVFLKTRERLGDLRALLESAQIPCAWIQGEMPQDRRNNAIARFRDG 295

Query: 632 KFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYAD 691
             +VL+  ++   G+D+P+   V   D  +     +    +  IGR AR       +   
Sbjct: 296 TVNVLLATDVAARGIDLPDVSHVINYDMPR-----TADVYLHRIGRTARAGKKGNAVSLI 350

Query: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
                +   I+   R  ++ ++      + P 
Sbjct: 351 EAHDQLM--IERVARYTKEAIKERFVEGMRPT 380


>gi|3775995|emb|CAA09200.1| RNA helicase [Arabidopsis thaliana]
          Length = 363

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 581 QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGIN 640
           +G + ++   TKR A+ L   L  ++ +   +H ++   +R   +   R G F +LV  +
Sbjct: 113 KGGKCIVFTQTKRDADRLAFGLA-KSYKCEALHGDISQAQRERTLAGFRDGNFSILVATD 171

Query: 641 LLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
           +   GLD+P   LV            +  + +   GR  R       +      ++  + 
Sbjct: 172 VAARGLDVPNVDLVI-----HYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVK 226

Query: 701 IDETT 705
           + E  
Sbjct: 227 MIEKE 231


>gi|50949482|emb|CAH10629.1| hypothetical protein [Homo sapiens]
          Length = 360

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 150 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 203

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 204 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 263

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 264 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 322

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 323 MVDSKHSMNIL----NR---IQEHFNKK 343


>gi|68488833|ref|XP_711763.1| hypothetical protein CaO19.10315 [Candida albicans SC5314]
 gi|68488878|ref|XP_711739.1| hypothetical protein CaO19.2797 [Candida albicans SC5314]
 gi|46433061|gb|EAK92517.1| hypothetical protein CaO19.2797 [Candida albicans SC5314]
 gi|46433086|gb|EAK92541.1| hypothetical protein CaO19.10315 [Candida albicans SC5314]
          Length = 623

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 98/273 (35%), Gaps = 29/273 (10%)

Query: 464 YIPEDS-LLFVDESHVTI----PQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW 518
           + P+D   + +DE H  +     +I   ++ D          GF       ++ +    +
Sbjct: 144 FNPDDFKTIIIDECHHAVAPTYQKILKHFKADTKNTNINV-IGFTATLARADKQMLKAVF 202

Query: 519 NCLRPT----TIVVSATPGSWE--------LEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
           + +       T++ +    S++        L      +  +   P  L +  ++      
Sbjct: 203 DRIVFQRSLATMIFNKELASFKASKLYFKRLNLSNVKMKGKDYDPKALYNAVLK----AG 258

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
             E +        ++    L+  +      ++   L ++ +  RY+ SE    ER  I+ 
Sbjct: 259 INEHLLLAYMELEKEYKSTLIFCINVEHCREVCALLQKQGVDARYVISETSNSERKTIVA 318

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           D + GKF VL  + +  EG DIP    + +    K     SK  +IQ IGR  R    K 
Sbjct: 319 DFKQGKFPVLCNVTVFTEGTDIPNIDSIILARPTK-----SKPLMIQMIGRGLRLHKEKS 373

Query: 687 ILYADTITKSIQLAIDETT--RRREKQLEHNKK 717
             +   +   +   ++       ++ Q++  K 
Sbjct: 374 HCHVVDLVGIMDENLELKAILEGKQLQMKKAKD 406



 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI---EAMQRPAIVMAPNKILAAQL 209
           Q  AI  +L+   S  K Q +   TGSGKT   + +I   +      +V+   + L AQ 
Sbjct: 40  QQEAIDSILEASESGVKRQAIEMATGSGKTVVFSHLIPLLKGKGTKTLVLEHTQELIAQS 99

Query: 210 YSEFKNFFPHNAV 222
           Y +     P   V
Sbjct: 100 YDKITRINPDLRV 112


>gi|330899330|gb|EGH30749.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 629

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|325970668|ref|YP_004246859.1| DEAD/DEAH box helicase [Spirochaeta sp. Buddy]
 gi|324025906|gb|ADY12665.1| DEAD/DEAH box helicase domain protein [Spirochaeta sp. Buddy]
          Length = 546

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 74/212 (34%), Gaps = 33/212 (15%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            L + GF  P       L     +     T++ SAT G+         + E +       
Sbjct: 159 RLFDMGF-YPDIQKMFSLLRACTDR---QTMLFSATLGTKVRNLAWSFMNEPV------- 207

Query: 556 DPPVEIRSARTQVEDVYDEI--------------NLAAQQGLRILLTVLTKRMAEDLTEY 601
              +E++     V+ +  E+               +  +     L+   TK    ++ + 
Sbjct: 208 --ELEVQPEEITVKAITQELFHISKDQKFGLFLKLMKKENPENCLIFTNTKARCIEVAKR 265

Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661
           L       +Y+  ++   +R++ I  ++ GK   LV  ++   GL I +  LV   D   
Sbjct: 266 LSLNGYPTKYLMGDLPQTKRLQTIERMKDGKIKFLVATDVAARGLQIDDLQLVVNYD--- 322

Query: 662 EGFLRSKTSLIQTIGRAARNVNS-KVILYADT 692
                   S +  IGR AR   S K I  AD 
Sbjct: 323 --IPDDFESYVHRIGRTARAGKSGKSITLADE 352


>gi|295086065|emb|CBK67588.1| Superfamily II DNA and RNA helicases [Bacteroides xylanisolvens
           XB1A]
          Length = 641

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 99/291 (34%), Gaps = 29/291 (9%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQ----IIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
            T++ SAT         +  +       I R     +    +     Q +D Y+ +    
Sbjct: 179 NTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVV-YTVQAKDKYEALKRIV 237

Query: 580 QQGLRI--LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
               +I  ++   T++  +++ + L +       +H E+   +R  +++  R+    +LV
Sbjct: 238 DYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLV 297

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKS 696
             ++   GLD+ +   V        G      S     GR  R   +   I   +   K 
Sbjct: 298 ATDVAARGLDVDDLTHVINY-----GLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352

Query: 697 IQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLS 756
               I+    ++    E      I  + + + I ++    + E+     +    ++L   
Sbjct: 353 KMREIERIISKKFIVGEMPTAAGICQKQLIKVIDDLEKVKVNEEEIADFMPEIYRKLEWL 412

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARI---RDEIKR---LKSSPYFQG 801
            K+       L K+M        F   A     R EI++   +++    +G
Sbjct: 413 SKE------DLIKRMVSH----EFNRFAEYYRNRPEIEQPTDMRAERAGRG 453


>gi|253733085|ref|ZP_04867250.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728993|gb|EES97722.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 517

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 15/193 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTG--LVDPPVE----IRSARTQVEDVYDEIN 576
            T++ SAT P + +    Q +   +II+     + DP +E    I     + +   + ++
Sbjct: 188 QTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLD 247

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++L
Sbjct: 248 --VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINIL 305

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLDI     V   D       +   S    IGR  R     + + + + I  
Sbjct: 306 VATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 360

Query: 696 SIQLAIDETTRRR 708
                I++   R+
Sbjct: 361 DYIRQIEDANGRK 373


>gi|257055065|ref|YP_003132897.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
 gi|256584937|gb|ACU96070.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
          Length = 449

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 54/143 (37%), Gaps = 13/143 (9%)

Query: 567 QVE--DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
           QVE  D    +   A +  R +L V TK   + LT  L    +    +H      +R  +
Sbjct: 242 QVEHKDKQAVVTEIAARQGRTILFVRTKHHVDRLTTRLRAAGVPAAALHGGKTQGQRNRV 301

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + D R G+  VLV  ++   G+ +   GLV  +D             +   GR AR   S
Sbjct: 302 LADFRSGRMPVLVATDVAARGIHVDGIGLVLHVDP-----AADHKDYLHRAGRTARAGAS 356

Query: 685 KVILYADTITKSIQLAIDETTRR 707
             ++   T  +        T RR
Sbjct: 357 GTVVTLVTREQR------RTVRR 373


>gi|224124522|ref|XP_002330044.1| predicted protein [Populus trichocarpa]
 gi|222871469|gb|EEF08600.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 6/118 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++     +G + ++   TKR A++++  L    I    +H ++   +R   +   R 
Sbjct: 371 ILSDLVTVYAKGGKTIIFTQTKRDADEVSMALTNT-IASEALHGDISQHQRERTLNGFRQ 429

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GKF VLV  ++   GLDIP   L+               + +   GR  R       +
Sbjct: 430 GKFTVLVATDVASRGLDIPNVDLII-----HYELPNDAETFVHRSGRTGRAGKEGTAI 482


>gi|156357705|ref|XP_001624354.1| predicted protein [Nematostella vectensis]
 gi|156211127|gb|EDO32254.1| predicted protein [Nematostella vectensis]
          Length = 349

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 80/230 (34%), Gaps = 23/230 (10%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P TL +Y  +D L F D +H+ I +   M+   F        +            +   
Sbjct: 136 TPGTLLKYRQKDRLFFSDLTHLVIDEADTMFDASFKSLTMEILH-----------TINVS 184

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV------ED 570
           +   +   T+  S    S  +E  +  +       +GL      +R    ++      E 
Sbjct: 185 QLQLIYNFTVYQSLQRLSC-IEASEKTVKHLETCSSGLHRVLPHVRHKFIKLNQHEKAER 243

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + + +   ++   + ++   +    + L  +L + N+ +  +H  +    R E     + 
Sbjct: 244 IVELLKKDSKSPGQTIVFCNSASSCDWLARHLEQHNLSLIRLHGNIPPKIRCERFEKFQN 303

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
              D+LV  ++   GLD  +   V   D     F  S    I  +GR  R
Sbjct: 304 KTADILVCTDIASRGLDTSDVSHVINFD-----FPNSMVDYIHRVGRTGR 348


>gi|18407327|ref|NP_566099.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75318047|sp|O22907|RH24_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 24
 gi|16323192|gb|AAL15330.1| At2g47330/T8I13.17 [Arabidopsis thaliana]
 gi|20196880|gb|AAB63833.2| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|21700913|gb|AAM70580.1| At2g47330/T8I13.17 [Arabidopsis thaliana]
 gi|330255734|gb|AEC10828.1| DEAD-box ATP-dependent RNA helicase 24 [Arabidopsis thaliana]
          Length = 760

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 75/188 (39%), Gaps = 16/188 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT--------GLVDPPVEIRSART-QVEDVYDE 574
            T++ SAT   W++E+    I+   IR T          +   V +  +   ++  + ++
Sbjct: 408 QTLLFSAT-MPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEK 466

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +     +G  +L+    K   +++   L   + +V  +H +     R+E ++  + G   
Sbjct: 467 LPGMIDEGD-VLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHH 525

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           VL+  ++   GLDI     V   D  K+  +      +  IGR  R  +   + Y     
Sbjct: 526 VLIATDVAARGLDIKSLKTVVNYDIAKDMDMH-----VHRIGRTGRAGDRDGVAYTLVTQ 580

Query: 695 KSIQLAID 702
           +  + A +
Sbjct: 581 REARFAGE 588


>gi|73996618|ref|XP_863098.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 6 [Canis familiaris]
          Length = 806

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 577 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 636

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 637 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 694

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 695 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 749

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 750 AITFLTKEDSAVFYELKQAILES 772


>gi|59800607|ref|YP_207319.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|194097783|ref|YP_002000826.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998282|ref|ZP_04718206.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae 35/02]
 gi|240013464|ref|ZP_04720377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18]
 gi|240015903|ref|ZP_04722443.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140]
 gi|240080042|ref|ZP_04724585.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA19]
 gi|240112252|ref|ZP_04726742.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|240114997|ref|ZP_04729059.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|240117282|ref|ZP_04731344.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|240120536|ref|ZP_04733498.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1]
 gi|240122833|ref|ZP_04735789.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|240125029|ref|ZP_04737915.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-92-679]
 gi|240127543|ref|ZP_04740204.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493059|ref|ZP_05106230.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae 1291]
 gi|260441187|ref|ZP_05795003.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI2]
 gi|268594137|ref|ZP_06128304.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268596188|ref|ZP_06130355.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268598313|ref|ZP_06132480.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|268600665|ref|ZP_06134832.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|268602977|ref|ZP_06137144.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|268681449|ref|ZP_06148311.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|268683617|ref|ZP_06150479.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679]
 gi|268685920|ref|ZP_06152782.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035]
 gi|291044521|ref|ZP_06570230.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293397657|ref|ZP_06641863.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|59717502|gb|AAW88907.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|193933073|gb|ACF28897.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512099|gb|EEH61444.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae 1291]
 gi|268547526|gb|EEZ42944.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268549976|gb|EEZ44995.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268582444|gb|EEZ47120.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|268584796|gb|EEZ49472.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|268587108|gb|EEZ51784.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|268621733|gb|EEZ54133.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|268623901|gb|EEZ56301.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679]
 gi|268626204|gb|EEZ58604.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035]
 gi|291011415|gb|EFE03411.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291611603|gb|EFF40672.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|317163562|gb|ADV07103.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 457

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 13/190 (6%)

Query: 521 LRPTTIVVSATPGSWELEQCQGII-----VEQIIRPTGLVDPPVEIRSART-QVEDVYDE 574
            +  T++ SAT  +   +  Q  +     VE   + T   +    I +  T Q  ++ + 
Sbjct: 183 RQRQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLER 242

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           + +       +++   TK+  + +T  L  RN+  + +H +     R+E +   + G   
Sbjct: 243 LIVDLHMNQ-VIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLR 301

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           VLV  ++   GLDI E   V   +   +         I  IGR  R     V I   D  
Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMPAQ-----PEDYIHRIGRTGRAGADGVAISLMDES 356

Query: 694 TKSIQLAIDE 703
            + +  AI E
Sbjct: 357 EQKMFEAIKE 366


>gi|66043725|ref|YP_233566.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae B728a]
 gi|63254432|gb|AAY35528.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae B728a]
          Length = 629

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|41327771|ref|NP_004809.2| probable ATP-dependent RNA helicase DDX23 [Homo sapiens]
 gi|160385708|sp|Q9BUQ8|DDX23_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX23; AltName:
           Full=100 kDa U5 snRNP-specific protein; AltName:
           Full=DEAD box protein 23; AltName: Full=PRP28 homolog;
           AltName: Full=U5-100kD
 gi|12803125|gb|AAH02366.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapiens]
 gi|119578415|gb|EAW58011.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_b [Homo
           sapiens]
 gi|119578419|gb|EAW58015.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_b [Homo
           sapiens]
 gi|123981044|gb|ABM82351.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [synthetic construct]
 gi|123995847|gb|ABM85525.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [synthetic construct]
 gi|189065458|dbj|BAG35297.1| unnamed protein product [Homo sapiens]
          Length = 820

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 591 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 650

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 651 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 708

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 709 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 763

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 764 AITFLTKEDSAVFYELKQAILES 786


>gi|331269837|ref|YP_004396329.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           botulinum BKT015925]
 gi|329126387|gb|AEB76332.1| DEAD/DEAH box helicase domain protein [Clostridium botulinum
           BKT015925]
          Length = 370

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 74/206 (35%), Gaps = 19/206 (9%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
             +   +  SAT  S   +     + E   +   +    V +++ +  V +  D     A
Sbjct: 172 SKKKQILCFSATMNSQVKKLAYRYMKE--PKIVSIQSEEVTLKNIKQAVVETTDRRKQDA 229

Query: 580 -------QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                        ++   TKR  ++L + L+ER    + +H ++   +R  ++++ +   
Sbjct: 230 LCKVLDEDNPFMAIIFCRTKRRVDNLEDALHERGYNCKKIHGDLNQAKRERVMKEFKKMD 289

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYAD 691
              L+  ++   GLDI     V   D        +  S I  IGR  R        L+ D
Sbjct: 290 IQYLIATDVAARGLDISGVTHVYSYD-----IPENAESYIHRIGRTGRAGEEGETCLFID 344

Query: 692 TITKS----IQLAIDETTRRREKQLE 713
              K     I+  I  T  RR   ++
Sbjct: 345 PKDKRTLDIIEKEIKVTIPRRYINID 370


>gi|320330891|gb|EFW86865.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 625

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|311897074|dbj|BAJ29482.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054]
          Length = 487

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 17/157 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D    I   A +  R+++   TK  A+ L   L    ++   +H      +R   +   R
Sbjct: 273 DKDATIAHIASRDGRVIMFTDTKHGADRLVAALLANGVKAAALHGGKSQPQRTRTLEQFR 332

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G  D LV  ++   G+ +    LV  LD   +         +   GR AR   S  ++ 
Sbjct: 333 GGLVDALVATDVAARGIHVDGLDLVVNLDPPAD-----HKDYLHRGGRTARAGESGTVVT 387

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
                +          RR   ++       I P + +
Sbjct: 388 LVLPNQ----------RRGTARML--ATAGITPVTTE 412


>gi|242034035|ref|XP_002464412.1| hypothetical protein SORBIDRAFT_01g017760 [Sorghum bicolor]
 gi|241918266|gb|EER91410.1| hypothetical protein SORBIDRAFT_01g017760 [Sorghum bicolor]
          Length = 507

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 524 TTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED 570
             ++ SAT             P  + +     + ++ I +    V+   ++         
Sbjct: 308 QLLMFSATFPVTVKEFKEKYLPRPYVINLMDELTLKGITQYYAFVEERQKVH-------- 359

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
             + +    Q    I +   +    E L + + E      Y+H+++    R  +  D R 
Sbjct: 360 CLNTLFSKLQINQSI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 418

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
           G    LV  +L   G+DI    +V   D     F ++  + +  +GR+ R  +  + +  
Sbjct: 419 GACRNLVCTDLFTRGIDIQAVNVVINFD-----FPKTSETYLHRVGRSGRYGHLGLAVNL 473

Query: 691 DTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
            T      L        R +Q    +   I PQ
Sbjct: 474 ITYEDRFNL-------YRIEQELGTEIKTIPPQ 499


>gi|225020696|ref|ZP_03709888.1| hypothetical protein CORMATOL_00703 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305679783|ref|ZP_07402593.1| putative DEAD-box ATP-dependent RNA helicase CshA [Corynebacterium
           matruchotii ATCC 14266]
 gi|224946642|gb|EEG27851.1| hypothetical protein CORMATOL_00703 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660403|gb|EFM49900.1| putative DEAD-box ATP-dependent RNA helicase CshA [Corynebacterium
           matruchotii ATCC 14266]
          Length = 470

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 64/176 (36%), Gaps = 14/176 (7%)

Query: 521 LRPTTIVVSAT-PGS-----WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED--VY 572
            R  T++ SAT PG       E       I  + +          ++      ++     
Sbjct: 188 HRHQTMLFSATMPGPVLTLAREFLHQPVHIRAENVDAPQTHTTTNQVVFQSHHLDKKATC 247

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            +I  A  +G + ++   TKR A DL   L +R   V  +H ++    R   +   R  +
Sbjct: 248 AKILQANNRG-KTIIFARTKRSAADLATDLAKRGFSVGAVHGDLGQAARETSLNAFRANR 306

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            D+LV  ++   G+D+ +   V               + +  IGR  R  +S   +
Sbjct: 307 VDILVATDVAARGIDVDDVTHVINFQT-----PDDPMTYVHRIGRTGRAGHSGTAV 357


>gi|224531763|ref|ZP_03672395.1| transcription-repair coupling factor [Borrelia valaisiana VS116]
 gi|224511228|gb|EEF81634.1| transcription-repair coupling factor [Borrelia valaisiana VS116]
          Length = 1124

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 87/251 (34%), Gaps = 21/251 (8%)

Query: 173 LLGVTGSGKTFTMAKV--IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L G  G  K F + K+       +  +++     L      + KN       + F   Y 
Sbjct: 32  LTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTL-----DKIKNDLKVITDQIFELNY- 85

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
            + P  Y         K +  NE+I  +         +     +    S +  I +  + 
Sbjct: 86  -FSPLVYKG----IGSKSTIFNERIKFL----INFYKKNPGIYITVLKSLLSKIPNENTL 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            + I +++    +   ++  +L+   Y++     I G F   G+ I+I+P   E    ++
Sbjct: 137 LKNIYKIEKNTKINTSDIEKNLITLGYEKTFRVTIPGEFATKGEIIDIYP-FGEQNPIKI 195

Query: 351 SMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIE 409
            +  + IEEI +F PLT  K    +   +I      +     +N     IK         
Sbjct: 196 ILHFDKIEEIRKFDPLTQLKQDNEILEFQILPKKEIIWNNEVINNLKTKIK--FVEYKKI 253

Query: 410 LEKEGRLLEAQ 420
            E+     E +
Sbjct: 254 FEELNFKKETK 264



 Score = 46.2 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 64/185 (34%), Gaps = 12/185 (6%)

Query: 525 TIVVSATPGSWELEQCQ---GIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L         I    I P   V     + S    +  +   I     +
Sbjct: 733 CLALSATPIPRSLHMSLIKLRDISVLKIPPKNRVKIEAYLESFSELL--IKHAIESELSR 790

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRY--MHSEVKTLERIEIIRDLRLGKFDVLVGI 639
             ++ L          L   + +     R   +H ++   E   I+ +     + +L+  
Sbjct: 791 DGQVFLVNHNIEELHYLKTLIEKLTPYARIAIIHGKLTGDEIENIMHNFIKKAYQILLAT 850

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI-Q 698
            ++  G+DIP    + I +A+K G  +    L Q  GR  R        +    ++ + +
Sbjct: 851 TIIENGIDIPNANTIIINNANKFGLAQ----LYQLKGRVGRGSKKAYAYFLYQDSEKLNE 906

Query: 699 LAIDE 703
            +I+ 
Sbjct: 907 RSIER 911


>gi|197100123|ref|NP_001125347.1| probable ATP-dependent RNA helicase DDX23 [Pongo abelii]
 gi|67460452|sp|Q5RC67|DDX23_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX23; AltName:
           Full=DEAD box protein 23
 gi|55727779|emb|CAH90640.1| hypothetical protein [Pongo abelii]
          Length = 820

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 591 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 650

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 651 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 708

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 709 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 763

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 764 AITFLTKEDSAVFYELKQAILES 786


>gi|330951359|gb|EGH51619.1| helicase [Pseudomonas syringae Cit 7]
          Length = 629

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|330878076|gb|EGH12225.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 629

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|317479221|ref|ZP_07938356.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
 gi|316904509|gb|EFV26328.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
          Length = 425

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 32/190 (16%)

Query: 522 RPTTIVVSAT--PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           +  T+  SAT  P    L        E+           VE+  A + V+ +   +    
Sbjct: 176 KRQTLFFSATMPPEIETLANSMLTHPEK-----------VEVTPASSTVDTISQSVYFVE 224

Query: 580 QQG--------------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           ++                 +L+   TK  A+ L   L +  IR   +H       R   +
Sbjct: 225 KKEKKDLLIHLLKNPAIESVLIFTRTKYGADKLARTLSKSGIRAEAIHGNKSQNARQRAL 284

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
              +  +  VL+  ++   G+D+ +   V   +           + +  IGR  R  +  
Sbjct: 285 TGFKNHELRVLIATDIAARGIDVDQLSHVINYE-----LPNIPETYVHRIGRTGRAGHDG 339

Query: 686 VILYADTITK 695
           + L      +
Sbjct: 340 IALSFCESEE 349


>gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase domain protein [Thermincola sp. JR]
 gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
          Length = 529

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 24/198 (12%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TKR  ++L   L  R  +   +H ++   +R +++R  + G+ D LV  ++   
Sbjct: 246 AIIFCKTKRGVDELVASLETRGYQAEGLHGDLTQAQRNKVMRKFKNGQVDYLVATDVAAR 305

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL----- 699
           GLDI     V   D       +     +  IGR  R   S   +      +  QL     
Sbjct: 306 GLDIENVSHVINYD-----IPQDPEVYVHRIGRTGRAGRSGKAITFIVPEEYRQLRLIEK 360

Query: 700 ------------AIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNIS 747
                       +I +   R++ Q+     + IN    +  I   I   L  D    +I+
Sbjct: 361 IIGARIARKNLPSIADIFERQKVQMIDKVANTIN--GGQLDIYRDIVQELAADYNLIDIA 418

Query: 748 IDAQQLSLSKKKGKAHLK 765
             A +L+L  +     ++
Sbjct: 419 SAALKLALDLELPAKEIE 436


>gi|254242152|ref|ZP_04935474.1| hypothetical protein PA2G_02881 [Pseudomonas aeruginosa 2192]
 gi|126195530|gb|EAZ59593.1| hypothetical protein PA2G_02881 [Pseudomonas aeruginosa 2192]
          Length = 446

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 80/214 (37%), Gaps = 19/214 (8%)

Query: 524 TTIVVSATPGSWELEQ--CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--YDEINLAA 579
            T++ SAT     L +   + +   Q++R   + +    +R      +DV   +++    
Sbjct: 183 QTLLFSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVITADDVAHKEQLLQWL 242

Query: 580 QQGL---RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  + ++   T+  A+ LT  L     +V  +H E    +R   I  L+ G   +L
Sbjct: 243 LSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKIL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYADT 692
           V  ++   GLD+    LV   D  + G        +  IGR  R         +I + D 
Sbjct: 303 VATDVAARGLDVEGLDLVINFDMPRSG-----DEYVHRIGRTGRAGAEGLAISLICHGDW 357

Query: 693 -ITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
            +  S++  + +   RR  +          P+ +
Sbjct: 358 NLMSSVERYLKQNFERRNIKELKAAYQG--PKKL 389


>gi|172060994|ref|YP_001808646.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171993511|gb|ACB64430.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 512

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 67/190 (35%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I ++Q +     +   V     R   + + D + 
Sbjct: 238 QTMLFSATLDGKIGSLTGRLLKDPERIEIQQRLESRTNIAQTVHYVDDRDHKDRLLDHLL 297

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  + ++   TK  A+ L   L +       +H ++    R   IR LR  +  VL
Sbjct: 298 -RDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARNRTIRALRERRVRVL 356

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 357 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 409

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 410 EQGALKRIER 419


>gi|261337192|ref|NP_001100263.2| probable ATP-dependent RNA helicase DDX23 [Rattus norvegicus]
 gi|149032134|gb|EDL87046.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 (predicted), isoform
           CRA_b [Rattus norvegicus]
          Length = 819

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 590 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 649

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 650 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 707

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 708 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 762

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 763 AITFLTKEDSAVFYELKQAILES 785


>gi|124430514|ref|NP_001074450.1| probable ATP-dependent RNA helicase DDX23 [Mus musculus]
 gi|148672229|gb|EDL04176.1| mCG18410, isoform CRA_a [Mus musculus]
          Length = 819

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 590 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 649

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 650 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 707

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 708 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 762

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 763 AITFLTKEDSAVFYELKQAILES 785


>gi|324990137|gb|EGC22075.1| DNA helicase RecG [Streptococcus sanguinis SK353]
          Length = 671

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 88/194 (45%), Gaps = 20/194 (10%)

Query: 523 PTTIVVSATPGSWELE-QCQGIIVEQIIRPTGLVDPPVEIRSART-QVEDVYDEINLAAQ 580
           P  ++++ATP    L     G +   II        P+  R  +  Q+E V D +     
Sbjct: 399 PDVLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLKKELH 458

Query: 581 QGLRILLTV------------LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +G ++                    + E+LT Y   R  +V  +H ++K+ E+  I++D 
Sbjct: 459 KGAQVYFISPLIEESEALDLKNAIALEEELTAYFG-RQTQVALLHGKMKSEEKEAIMQDF 517

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVI 687
           + G+ D+LV   ++  G+++P   ++ I+DAD+ G  +    L Q  GR  R N  S  +
Sbjct: 518 KEGRTDILVSTTVIEVGVNVPNATVMVIMDADRFGLSQ----LHQLRGRVGRGNKQSYAV 573

Query: 688 LYADTITKSIQLAI 701
           L A+  T+S +  +
Sbjct: 574 LVANPKTESGKRRM 587


>gi|309803579|ref|ZP_07697671.1| DEAD-box ATP-dependent RNA helicase CshB family protein
           [Lactobacillus iners LactinV 11V1-d]
 gi|309805298|ref|ZP_07699349.1| putative DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
           iners LactinV 09V1-c]
 gi|308164327|gb|EFO66582.1| DEAD-box ATP-dependent RNA helicase CshB family protein
           [Lactobacillus iners LactinV 11V1-d]
 gi|308165374|gb|EFO67606.1| putative DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
           iners LactinV 09V1-c]
          Length = 389

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 19/180 (10%)

Query: 529 SAT-PGSWE------LEQCQGIIVE--QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
           SAT P   E      +E  + ++++   +I PT + +  +++ S     +D+   +    
Sbjct: 158 SATIPVKLEQFLNKYMEHPEFVVIDNPSVISPT-VANDLIDVGSKNK--KDILYTLL-TM 213

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
            Q     +   TK+  ++L  YL ++ ++V  +H  +   ER   IR +R G++  ++  
Sbjct: 214 GQPYLAFVFANTKKTVDELATYLDQKGLKVAKIHGGITERERKRTIRQVREGQYQYVIAS 273

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQL 699
           +L   G+DIP   LV   +            +I  IGR  RN N           + +Q 
Sbjct: 274 DLAARGIDIPGISLVINYE-----IPTDLEFVIHRIGRTGRN-NLYGHAITLIHEEEMQQ 327


>gi|307328239|ref|ZP_07607417.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306886073|gb|EFN17081.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 503

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 17/157 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D +      A +  R+++ + TK   + LT+ L    +R   +H      +R   +   +
Sbjct: 302 DKHRTTTEIAAREGRVIMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLAQFK 361

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ + +  LV  +D             +   GR AR   S  ++ 
Sbjct: 362 TGHVTVLVATNVAARGIHVDDLDLVVNIDP-----PTDHKDYLHRGGRTARAGESGSVVT 416

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVK 726
             T             +RR+          I P++ +
Sbjct: 417 LVTP-----------NQRRDMTRLMTAA-GIVPRTTQ 441


>gi|301615062|ref|XP_002936986.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Xenopus
           (Silurana) tropicalis]
          Length = 614

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 17/212 (8%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTG-- 553
            + + GF      ++    F  +   R  T++ SAT         +  +V+ I    G  
Sbjct: 340 RMIDMGFE-----EDIRTIFSYFKGQR-QTLLFSATMPKKIQNFAKSALVKPITINVGRA 393

Query: 554 ---LVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
               +D   E+   + + + VY  +    +    +L+    K   + + EYL  + +   
Sbjct: 394 GAASLDVIQEVEYVKEEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAV 452

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +H      ER + I   R  K DVLV  ++  +GLD P    V   D  +E       +
Sbjct: 453 AIHGGKDQEERTKAIEAFREEKKDVLVATDVASKGLDFPAIQHVVNYDMPEE-----IEN 507

Query: 671 LIQTIGRAARNVNSKVILYADTITKSIQLAID 702
            +  IGR  R+ N+ +       +    + +D
Sbjct: 508 YVHRIGRTGRSGNTGIATTFINKSCDESVLMD 539


>gi|291277211|ref|YP_003516983.1| transcription-repair coupling factor [Helicobacter mustelae 12198]
 gi|290964405|emb|CBG40255.1| transcription-repair coupling factor [Helicobacter mustelae 12198]
          Length = 991

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 52/140 (37%), Gaps = 4/140 (2%)

Query: 260 HSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319
               R    ++  ++    S +Y +   +        +   + ++ ++L   LV   Y+ 
Sbjct: 71  LVGLREFYAQDCFLIAPLSSVLYPL--PKKELLEPFVISKEEPLDVRDLKEKLVHFGYEV 128

Query: 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379
            +I  + G     GD ++I  +  +D ++R+S F  + E I EF   + +          
Sbjct: 129 VEIVEMDGEVSFRGDILDI--AIPQDKSYRLSFFDIECESIREFDVQSQKSKTLELESLS 186

Query: 380 YANSHYVTPRPTLNTAMKYI 399
              + +   +      ++ I
Sbjct: 187 IPPAVFHLSKEQYERMIEEI 206



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 21/192 (10%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED-----VYDEINLA 578
             + +SATP    L       + QI   + L+ PP E +S +T V++     + + I   
Sbjct: 627 HLLSMSATPIPRTLNMA----LSQIKGMSSLLTPPSERQSTKTFVKEKSASLIKEVILRE 682

Query: 579 AQQGLRILL---TVLTKRMAE-DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
            ++  ++      +    M E +L   L +  I    +HS++ +    EI+      K  
Sbjct: 683 LRRNGQVFYIHNNIANIPMIERELKALLPQLEI--ALLHSQIDSKTTEEILLSFAEKKTH 740

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+  +++  G+ +P    + +  AD  G       L Q  GR  R        Y     
Sbjct: 741 LLLCTSIVESGIHLPNANTIIVDGADHFGL----ADLHQLRGRVGRGDREGFCYYLIDDR 796

Query: 695 KSIQLAIDETTR 706
           +SI    + T R
Sbjct: 797 ESITQ--EATKR 806



 Score = 39.3 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 4/97 (4%)

Query: 130 SINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSRE-KVQLLLGVTGSGKT-FTMAK 187
            I+    +I FF+ Q  +  + DQ   I ++   + S +   +LL G  G GKT   M  
Sbjct: 463 KIDTTLPEILFFKEQAGFVLTEDQERCIQEIFADMSSGQVMDRLLSGDVGFGKTEVAMNA 522

Query: 188 VIEAMQR--PAIVMAPNKILAAQLYSEFKNFFPHNAV 222
           +  A Q    A+++ P  +LA Q Y   K       V
Sbjct: 523 IYAACQNGFQALMIVPTTLLALQHYHTLKERLKGLRV 559


>gi|228924198|ref|ZP_04087469.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835416|gb|EEM80786.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 481

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 67/185 (36%), Gaps = 11/185 (5%)

Query: 525 TIVVSAT-PGSWE-LEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINL--AA 579
           T++ SAT P   E L +        I I+  G+    +E        ++    +      
Sbjct: 180 TMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTI 239

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +     ++   T+   + +   L   N     +H  +   +R E++ D R GKF  LV  
Sbjct: 240 ENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQ 698
           ++   G+DI     V   D   E     K S +   GR  R  NS K I +         
Sbjct: 300 DVAARGIDIDNITHVINYDIPLE-----KESYVHRTGRTGRAGNSGKAITFITPYENRFL 354

Query: 699 LAIDE 703
             I+E
Sbjct: 355 EEIEE 359


>gi|167628011|ref|YP_001678511.1| ATP-dependent RNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167598012|gb|ABZ88010.1| ATP-dependent RNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 445

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 103/326 (31%), Gaps = 41/326 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   +++L            ++     +  R     + GF       N   +  
Sbjct: 130 TPGRLLDLYSQNAL--------KFDSLNTFVLDEADRM---LDMGFI------NDLKKIH 172

Query: 517 EWNCLRPTTIVVSATPGSW------ELEQCQGIIVEQIIRPT-GLVDPPVEIRSARTQVE 569
           +    +  T++ SAT          E       +   ++  T   +   +      T++ 
Sbjct: 173 KLLPKKLQTLMFSATFSPEITSLANEFLDSPQSVSADVVNTTVKKITQKIYTLDKSTKIN 232

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   I    Q   ++L+   TK  A  ++E L    I    +H       R + + D +
Sbjct: 233 ALISLIKD--QDLHQVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFK 290

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
               +VLV  ++   G+DI +   V  LD             +  IGR  R       I 
Sbjct: 291 SKDINVLVATDIAARGIDIAQLPCVINLD-----LPNVAEDYVHRIGRTGRAGQDGLAIS 345

Query: 689 YADTITKSIQLAIDETTRR---REKQLEHNKKHN--INP---QSVKEKIMEVIDPILLED 740
                       I+        RE+       HN  I     ++  +KI EV   I  + 
Sbjct: 346 LVSADEVESLSNIEHLIGHLLPREELEGFEATHNVPITSMSRKTKAKKIDEV-KIIAAKR 404

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKS 766
           A   N + + ++ S   K     +K 
Sbjct: 405 ANKNNKNTNQKKSSNHNKDFAKKIKQ 430


>gi|148242659|ref|YP_001227816.1| superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
 gi|147850969|emb|CAK28463.1| Superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
          Length = 560

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 15/188 (7%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIR----SARTQVEDVYDEIN 576
             ++ SAT         Q  +    E IIR        +  R      + ++  +   + 
Sbjct: 191 QVVLFSATMPPEIKRISQQHLQNPAEVIIRTQKADASRIRQRHILLPHQQKLSALLRVLE 250

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G  +++   TK +   + E L    I    ++ +V    R   I  L+ G+ DVL
Sbjct: 251 AHGPGG--VIIFARTKAVTVTVAEALEAEGIACSVLNGDVPQSLRERTIERLKQGRIDVL 308

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           V  ++   GLD+   GLV   DA  +       + +  IGR  R       IL+     +
Sbjct: 309 VATDVAARGLDVDRIGLVVNYDAPFD-----SEAYVHRIGRTGRAGRQGDAILFLSYRER 363

Query: 696 SIQLAIDE 703
            +  +++ 
Sbjct: 364 RLLHSLER 371


>gi|121593545|ref|YP_985441.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
           JS42]
 gi|120605625|gb|ABM41365.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
          Length = 484

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 75/195 (38%), Gaps = 12/195 (6%)

Query: 525 TIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA- 579
           T++ SAT            + +    ++ RP       VE R      +D    I     
Sbjct: 187 TLLFSATFSPEIKRLAGSYLQDPITIEVARPNETAST-VEQRFFAVDGDDKRRAIRHVLN 245

Query: 580 QQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++GL+   + V +K     L   L    ++   +H +    ER++ +   + G+ D+LV 
Sbjct: 246 ERGLKQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALEAFKSGEVDLLVC 305

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI +   V   D        +    +  IGR  R   S + +     + +  
Sbjct: 306 TDVAARGLDIKDVPAVFNYDVPF-----NAEDYVHRIGRTGRAGASGLAVTLAASSDTRL 360

Query: 699 LAIDETTRRREKQLE 713
           +A  E   +++ +LE
Sbjct: 361 VADIEKLIKKKIELE 375


>gi|73996628|ref|XP_863206.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 11 [Canis familiaris]
          Length = 811

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 582 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 641

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 642 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 699

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 700 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 754

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 755 AITFLTKEDSAVFYELKQAILES 777


>gi|15219185|ref|NP_173078.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75336890|sp|Q9SA27|RH36_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 36
 gi|4966350|gb|AAD34681.1|AC006341_9 Similar to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
           melanogaster and is a member of PF|00270 DEAD/DEAH box
           helicase family [Arabidopsis thaliana]
 gi|332191310|gb|AEE29431.1| DEAD-box ATP-dependent RNA helicase 36 [Arabidopsis thaliana]
          Length = 491

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 85/234 (36%), Gaps = 28/234 (11%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR-ILLTVLTK 592
           ++E  +    + +Q I           +    +Q+ED          +G+R  ++ V T 
Sbjct: 264 AYEGLKTVDTLTQQFIFEDKDAKELYLVH-ILSQMED----------KGIRSAMIFVSTC 312

Query: 593 RMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECG 652
           R  + L+  L E  +    MHS      R+  +   + GK  +L+  ++   GLDIP   
Sbjct: 313 RTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVD 372

Query: 653 LVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
           LV   D  ++         +  +GR AR     + +            I ET  +   ++
Sbjct: 373 LVINYDIPRD-----PRDYVHRVGRTARAGRGGLAVSI----------ITETDVKLIHKI 417

Query: 713 EHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKS 766
           E      + P + K+ I + ++   +  A    +          K K +  LK 
Sbjct: 418 EEEVGKKMEPYN-KKVITDSLEVTKVSKAKRVAMMKMLDNGFEDKVKDRRKLKR 470


>gi|50122209|ref|YP_051376.1| ATP-dependent RNA helicase SrmB [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612735|emb|CAG76185.1| ATP-dependent RNA helicase [Pectobacterium atrosepticum SCRI1043]
          Length = 441

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 67/184 (36%), Gaps = 10/184 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L  +L+E  I   Y+  E+   +R E I+ +  G+ +VLV  ++  
Sbjct: 250 RSIIFVRKRERVHELVSWLHEAGINSCYLEGEMVQAKRNEAIKRMSDGRVNVLVATDIAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-----SIQ 698
            G+DI +   V   D       R+  + +  IGR  R       +             I 
Sbjct: 310 RGIDIDDVSHVFNFD-----LPRTADTYLHRIGRTGRAGRKGCAISFVEAHDHLLLGKIS 364

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKK 758
             ++E  + R  +    +    + ++  +   +V+     +            +   SK 
Sbjct: 365 RYLNEPLKPRVIEELRPETKAPSAKTTGKPSKKVLAKRKEKKEKEKEKVKVKVRDRDSKN 424

Query: 759 KGKA 762
            GK 
Sbjct: 425 VGKR 428


>gi|2655202|gb|AAB87902.1| U5 snRNP 100 kD protein [Homo sapiens]
          Length = 820

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 591 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 650

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 651 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 708

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 709 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 763

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 764 AITFLTKEDSAVFYELKQAILES 786


>gi|330829717|ref|YP_004392669.1| ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
 gi|328804853|gb|AEB50052.1| ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
          Length = 466

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 66/208 (31%), Gaps = 37/208 (17%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP--VEIRSARTQVEDVYDEINLA 578
            +   ++ SAT      E             TGL+D P  +E+    +  E +   ++  
Sbjct: 178 KKRQNLLFSATFADEIRELA-----------TGLLDNPAVIEVAPRNSTAERIEQLVHPC 226

Query: 579 AQQG--------------LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
            +                 ++L+   TK MA  + E L +  +    +H       R   
Sbjct: 227 DKANKIALLSHLVTSNNWQQVLVFTRTKHMANRVAETLDKNGVSAAAIHGNKSQGARTRA 286

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-N 683
           +   + G   VLV  ++   GLDI +   V   +             +  IGR  R    
Sbjct: 287 LAGFKDGSVKVLVATDIAARGLDIDKLPQVVNFE-----LPNVAEDYVHRIGRTGRAGAA 341

Query: 684 SKVILYADTITKSIQLAIDETTRRREKQ 711
              I         +  AI+    R  KQ
Sbjct: 342 GHAISLVAADEGKLIKAIE----RLTKQ 365


>gi|323349203|gb|EGA83433.1| Irc3p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 570

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 6/128 (4%)

Query: 571 VYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           +   ++   ++ L+  LL  + K   + L +   +  I   Y+ S+ K +ER  II+  +
Sbjct: 147 LKTYLHKKQEKSLKSTLLFGVDKAHVQSLHKLFKDNGINTDYVTSDTKQIERDNIIQKFK 206

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+ +VL+   +  EG D+P    + +    K     S++ LIQ IGR  R  +SK   +
Sbjct: 207 NGETEVLMNCGIFTEGTDMPNIDCILLCRPTK-----SRSLLIQMIGRGLRLHHSKDHCH 261

Query: 690 ADTITKSI 697
                 + 
Sbjct: 262 IIDFIGAS 269


>gi|302134631|ref|ZP_07260621.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato NCPPB 1108]
          Length = 629

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|269963891|ref|ZP_06178203.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831378|gb|EEZ85525.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 551

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   + ++   T++ A D+TE   +  I+  Y+   +   ER + ++ L  GK  V
Sbjct: 218 WRKIAGNRQTVIFCQTRKHAIDVTEAFQKAGIKCDYIDGVMSERERKKRLKALDTGKLQV 277

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +V +N+L EG D      V +L         SK+SLIQ +GR  R ++ 
Sbjct: 278 IVNVNVLTEGFDSQPISCVILLRGS-----SSKSSLIQMVGRGLRKLDP 321


>gi|260770147|ref|ZP_05879080.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
 gi|260615485|gb|EEX40671.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
          Length = 422

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 83/241 (34%), Gaps = 23/241 (9%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEINLA 578
            T+  SAT  S        ++   VE  + P+      VE  +     + +       + 
Sbjct: 188 QTLFFSATFDSKIKAFAHRMMQNPVEVQVAPSNSTADTVEQMVYPVDKKRKRELLAYLIG 247

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++   ++L+   TK+ ++ L + L    I+   ++ +     R + + D + GK   L+ 
Sbjct: 248 SRNWQQVLVFTRTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIA 307

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   G+DI +   V   D   +         +  IGR  R   +   +       + +
Sbjct: 308 TDVAARGIDIAQLEQVVNFDMPFK-----AEDYVHRIGRTGRAGKAGFAVSLMSHDEQPL 362

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
             AI+    +R  Q          P  V          +  E  A    S  A++  +  
Sbjct: 363 LEAIERLLDKRLPQEW---LKGYEPSPVV---------VSEESQAPRRNSRSAEKRKMKA 410

Query: 758 K 758
           K
Sbjct: 411 K 411


>gi|116329398|ref|YP_799118.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330001|ref|YP_799719.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116122142|gb|ABJ80185.1| ATP-dependent RNA helicase (superfamily II) [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116123690|gb|ABJ74961.1| ATP-dependent RNA helicase (superfamily II) [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 513

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 86/260 (33%), Gaps = 42/260 (16%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QII--RPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            TI+ SAT     L   +      QII      L  P +E      Q     + +    +
Sbjct: 180 QTIMFSATMTEDILTLMKRFQKHPQIIDVTHQKLSAPKIEQIYYEIQENAKGEALARLIE 239

Query: 581 QGLR----ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              R     L+   TK   + + E L  R      +H ++   +R +++   R G  ++L
Sbjct: 240 --YRNVKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNIEIL 297

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+D+     V   D  ++G        +  IGR  R     +          
Sbjct: 298 VATDVAGRGIDVNNVEAVFNYDLPRDG-----EDYVHRIGRTGRAGKKGIAFSFIV---- 348

Query: 697 IQLAIDETTRRREKQLEHNKK-----HNINPQSVKEKIMEVIDPILLEDAATTNISIDAQ 751
                        KQ+ +N K     + I  ++ K   ++ ++   +    +   SI   
Sbjct: 349 ------------GKQI-YNLKKIERINGIKIEAGKIPTLDDLEETKIHSYTSKVRSI--- 392

Query: 752 QLSLSKKKGKAHLKSLRKQM 771
              +       ++  + K M
Sbjct: 393 ---VDAGHIGKYVNQVEKLM 409


>gi|30023480|ref|NP_835111.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|229130700|ref|ZP_04259653.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-Cer4]
 gi|29899041|gb|AAP12312.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|228652717|gb|EEL08602.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-Cer4]
          Length = 481

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 67/185 (36%), Gaps = 11/185 (5%)

Query: 525 TIVVSAT-PGSWE-LEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINL--AA 579
           T++ SAT P   E L +        I I+  G+    +E        ++    +      
Sbjct: 180 TMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTI 239

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +     ++   T+   + +   L   N     +H  +   +R E++ D R GKF  LV  
Sbjct: 240 ENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQ 698
           ++   G+DI     V   D   E     K S +   GR  R  NS K I +         
Sbjct: 300 DVAARGIDIDNITHVINYDIPLE-----KESYVHRTGRTGRAGNSGKAITFITPYENRFL 354

Query: 699 LAIDE 703
             I+E
Sbjct: 355 EEIEE 359


>gi|24372534|ref|NP_716576.1| ATP-dependent RNA helicase SrmB [Shewanella oneidensis MR-1]
 gi|24346546|gb|AAN54021.1|AE015540_1 ATP-dependent RNA helicase SrmB [Shewanella oneidensis MR-1]
          Length = 420

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 83/218 (38%), Gaps = 39/218 (17%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR---SARTQVEDVYDEINLA 578
           R   ++ SAT     LE    I          +++ P+EI      + + + ++  I+LA
Sbjct: 178 RKQNMLFSAT-----LEGSGVIRF-----AREVLNDPIEIDVDAPRKEKAK-IHQWIHLA 226

Query: 579 AQQGL---------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
             +                 R ++ V T+ +   L   L +  I   +M  +++  +R +
Sbjct: 227 DDKDHKFALLCHLLKQEDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQ 286

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +     G+ +VL+  ++   G+DI +   V   D  +     S  + I  IGR  R   
Sbjct: 287 ALSRFTKGEVNVLLATDVAARGIDIDDISHVINFDMPR-----SADTYIHRIGRTGRAGA 341

Query: 684 SK-VILYAD----TITKSIQLAIDETTRRREKQLEHNK 716
               I  A+     I   I+  I++  +RR  +    K
Sbjct: 342 KGTAISLAEAHDMRIVGKIERYIEQPLKRRIIEELRPK 379


>gi|323509361|dbj|BAJ77573.1| cgd3_2330 [Cryptosporidium parvum]
          Length = 557

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 6/132 (4%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +   +        R ++   TK   + + + L   NI V Y++  +    R   +   R 
Sbjct: 236 LLYLLRNTIPSHERAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLNTFRK 295

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
            K   L+  ++   G+DIP    V   D     F  S    +   GR AR        ++
Sbjct: 296 NKSRALIVTDIAARGVDIPMIKYVINFD-----FPLSPKLFVHRTGRTARAGQHG-RAFS 349

Query: 691 DTITKSIQLAID 702
              ++ +   ID
Sbjct: 350 LITSRDLPYTID 361


>gi|312375100|gb|EFR22532.1| hypothetical protein AND_15065 [Anopheles darlingi]
          Length = 821

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 72/191 (37%), Gaps = 16/191 (8%)

Query: 516 EEWNCLRP--TTIVVSAT--PGSWELEQC-----QGIIVEQIIRPTGLVDPPVEIRSART 566
           E +N  +    T++ +AT  P    L +        + +  I +PT   +  + I     
Sbjct: 592 ENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSIGKPTERTEQIIHIMGEND 651

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + + + ++   +     ++ V  K+ A+ L + L +       +H      +R   + 
Sbjct: 652 KRKKLMEILSRGVEPP--CIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREYALA 709

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
            L+ G  D+LV  ++   G+DI +  LV   D  K     S       IGR  R   +  
Sbjct: 710 SLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAK-----SIEDYTHRIGRTGRAGKTGC 764

Query: 687 ILYADTITKSI 697
            +   T   S 
Sbjct: 765 AISFCTKDDSH 775


>gi|302063416|ref|ZP_07254957.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato K40]
          Length = 629

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|289769727|ref|ZP_06529105.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|289699926|gb|EFD67355.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
          Length = 495

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 53/156 (33%), Gaps = 17/156 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D +      A +  R+L+ + T+   + LT  L    +R   +H      +R   +   +
Sbjct: 294 DKHAATTEIAARDGRVLMFLGTRHAVDRLTRDLLNSGVRAAALHGGKSQSQRTRTLAQFK 353

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ +    LV  +D   +         +   GR AR   S  ++ 
Sbjct: 354 NGHVTVLVATNVAARGIHVDSLDLVVNVDPPSD-----HKDYLHRGGRTARAGESGSVVT 408

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
             T             +RR           I PQ+ 
Sbjct: 409 PVTP-----------NQRRAMTRLMTTA-GIVPQTT 432


>gi|294892441|ref|XP_002774065.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239879269|gb|EER05881.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 674

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 5/112 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+   TKR A+D+T  L         +H + K  ER  ++   + G+  +++  ++  
Sbjct: 465 KTLIFCDTKRGADDITRLLRRDGWPALSIHGDKKQSERDWVLNQFKTGRSAIMIATDVAS 524

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            GLD+ +   V   D     F  +    +  IGR  R   S V     +  K
Sbjct: 525 RGLDVKDVKYVINYD-----FPGTIEDYVHRIGRTGRAGASGVAYSFFSPDK 571


>gi|294882254|ref|XP_002769661.1| RNA-dependent helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239873259|gb|EER02379.1| RNA-dependent helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 310

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 5/112 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           + L+   TKR A+D+T  L         +H + K  ER  ++   + G+  +++  ++  
Sbjct: 101 KTLIFCDTKRGADDITRLLRRDGWPALSIHGDKKQSERDWVLNQFKTGRSAIMIATDVAS 160

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            GLD+ +   V   D     F  +    +  IGR  R   S V     +  K
Sbjct: 161 RGLDVKDVKYVINYD-----FPGTIEDYVHRIGRTGRAGASGVAYSFFSPDK 207


>gi|254374244|ref|ZP_04989726.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
 gi|151571964|gb|EDN37618.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
          Length = 441

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 99/322 (30%), Gaps = 40/322 (12%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +   ++++            ++     +  R     + GF       N   +  
Sbjct: 130 TPGRLLDLYSQNAV--------KFDSLNTFVLDEADRM---LDMGFI------NDLKKIH 172

Query: 517 EWNCLRPTTIVVSAT-------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
           +    +  T++ SAT         +  L   Q +  + +      +   +       ++ 
Sbjct: 173 KLLPKKLQTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKIN 232

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +   I    Q   ++L+   TK  A  ++E L    I    +H       R + + D +
Sbjct: 233 ALISLIKD--QNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFK 290

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
               +VLV  ++   G+DI +   V  LD             +  IGR  R       I 
Sbjct: 291 SNDINVLVATDIAARGIDIAQLPCVINLD-----LPNVAEDYVHRIGRTGRAGQEGLAIS 345

Query: 689 YADTITKSIQLAIDETTRR---REKQLEHNKKHN-----INPQSVKEKIMEVIDPILLED 740
                       I+        RE+       HN     ++ ++  +KI EV        
Sbjct: 346 LVSADEVESLSNIEHLIGHLLPREELEGFEANHNVPITSMSHKTKAKKIDEVKIIAAKRA 405

Query: 741 AATTNISIDAQQLSLSKKKGKA 762
               N    + +   +KK  + 
Sbjct: 406 KKNNNNKKPSNKNDFAKKIRQK 427


>gi|73996622|ref|XP_863146.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 8 [Canis familiaris]
          Length = 804

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 575 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 634

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 635 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 692

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 693 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 747

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 748 AITFLTKEDSAVFYELKQAILES 770


>gi|73996626|ref|XP_863183.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 10 [Canis familiaris]
          Length = 812

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 583 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 642

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 643 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 700

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 701 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 755

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 756 AITFLTKEDSAVFYELKQAILES 778


>gi|330967974|gb|EGH68234.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 629

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|331086825|ref|ZP_08335902.1| hypothetical protein HMPREF0987_02205 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409991|gb|EGG89426.1| hypothetical protein HMPREF0987_02205 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 529

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 66/170 (38%), Gaps = 16/170 (9%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      E+ +      E I      +    +     E++  + + E +   +
Sbjct: 180 QTVLFSATMPKAIMEITKKFQKNAELIKVTKKELTVPNIEQFYYEVKP-KNKEEVLTRLL 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++   +    ++   TK+  + L   L  R      +H ++K  +R  +++  R GK D+
Sbjct: 239 DIYTPK--LSVIFCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           LV  ++   G+D+ E   V   D       + +   +  IGR  R     
Sbjct: 297 LVATDVAARGIDVDEVEAVFNYD-----LPQDEEYYVHRIGRTGRAGRVG 341


>gi|322710225|gb|EFZ01800.1| ATP dependent RNA helicase (Dbp5), putative [Metarhizium anisopliae
           ARSEF 23]
          Length = 492

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 5/128 (3%)

Query: 563 SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERI 622
            A  +  DV  ++      G  I + V T++ A ++   + +   +V  +H E  + ER 
Sbjct: 298 PAENERYDVLCKLYGLMTVGQSI-IFVKTRKSASEIQRRMMDDGHKVTVLHGEFDSGERQ 356

Query: 623 EIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE----GFLRSKTSLIQTIGRA 678
           +++   R G+  VL+  NLL  G+D+    +V   D   +    G      + +  IGR 
Sbjct: 357 QLLAKFRSGESKVLITTNLLSRGIDVSSVSMVINYDIPMKPGPRGEEPDAETYLHRIGRT 416

Query: 679 ARNVNSKV 686
            R     V
Sbjct: 417 GRFGRIGV 424


>gi|253731082|ref|ZP_04865247.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|297210100|ref|ZP_06926493.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300910462|ref|ZP_07127914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304379262|ref|ZP_07362001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|253725209|gb|EES93938.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|296885300|gb|EFH24240.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300888304|gb|EFK83495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304342121|gb|EFM08021.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312437505|gb|ADQ76576.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|320140748|gb|EFW32600.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143723|gb|EFW35500.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 517

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 15/193 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTG--LVDPPVE----IRSARTQVEDVYDEIN 576
            T++ SAT P + +    Q +   +II+     + DP +E    I     + +   + ++
Sbjct: 188 QTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLD 247

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++L
Sbjct: 248 --VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINIL 305

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLDI     V   D       +   S    IGR  R     + + + + I  
Sbjct: 306 VATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 360

Query: 696 SIQLAIDETTRRR 708
                I++   R+
Sbjct: 361 DYIRQIEDANGRK 373


>gi|190407384|gb|EDV10651.1| ATP-dependent RNA helicase DDX25 [Saccharomyces cerevisiae RM11-1a]
 gi|207341250|gb|EDZ69357.1| YOR046Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259149529|emb|CAY86333.1| Dbp5p [Saccharomyces cerevisiae EC1118]
 gi|323335582|gb|EGA76866.1| Dbp5p [Saccharomyces cerevisiae Vin13]
 gi|323352404|gb|EGA84939.1| Dbp5p [Saccharomyces cerevisiae VL3]
          Length = 482

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L      V  +H +++T ER  +I D R G+  VL+  N+L  G
Sbjct: 334 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 393

Query: 646 LDIPECGLVAILDADKEGFLRSKTS-LIQTIGRAARNVNSKVI--LYADTITKSIQLAI 701
           +DIP   +V   D       ++  +  I  IGR  R     V      D  + +I  AI
Sbjct: 394 IDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAI 452


>gi|28872183|ref|NP_794802.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213971879|ref|ZP_03399980.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
 gi|301385283|ref|ZP_07233701.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato Max13]
 gi|28855437|gb|AAO58497.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213923363|gb|EEB56957.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
 gi|331015971|gb|EGH96027.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 629

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|39995599|ref|NP_951550.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
 gi|39982362|gb|AAR33823.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
 gi|298504618|gb|ADI83341.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
          Length = 450

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 5/117 (4%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++   TKR AE+L   L  +      +H ++    R   I  ++ G+  +LV  ++  
Sbjct: 246 RAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLLVATDVAA 305

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLA 700
            GLD+     V   D  K          +  IGR  R   S + +   ++ +   LA
Sbjct: 306 RGLDVTGISHVINFDLPKF-----AEDYVHRIGRTGRAGASGIAISFASLNEVNYLA 357


>gi|83942539|ref|ZP_00955000.1| DEAD/DEAH box helicase [Sulfitobacter sp. EE-36]
 gi|83846632|gb|EAP84508.1| DEAD/DEAH box helicase [Sulfitobacter sp. EE-36]
          Length = 433

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 59/179 (32%), Gaps = 12/179 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPV--EIRSARTQVEDVYDEINL 577
            T++ SAT     + +     +   IR    P G     +  E+       +       L
Sbjct: 182 QTMLFSAT-MPKLMNEIANSYLNSPIRIEVSPPGKAADKITQEVHFIAKAEKKSLLIELL 240

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                 R L+   TK   E L + L +   +   +H      +R   I   + G+  VLV
Sbjct: 241 GKHTEERALVFGRTKHGCEKLMKDLVKAGFKAASIHGNKSQGQRDRAIESFKKGEVTVLV 300

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
             ++   GLDIP+   V   +           + +  IGR AR       +      + 
Sbjct: 301 ATDVAARGLDIPDVKHVYNYE-----LPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEM 354


>gi|325185186|emb|CCA19676.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 494

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 61/176 (34%), Gaps = 11/176 (6%)

Query: 537 LEQCQGIIVEQIIR-PTGLVDPPVEIRSARTQVEDVYDEINLAAQQG----LRILLTVLT 591
            E  + +   Q  R P  +    V +   + +   + D +     +G     R ++    
Sbjct: 254 FEGIKLVSDNQFNRIPKEIKQTFVRVAP-QAKYTVLRDALEQHRGRGKAKFQRTIIFCND 312

Query: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
               +     L +   +   +H +V    R   I++   G   VLV  +L   GLDI   
Sbjct: 313 IASCQAAEHMLRQNGFKTASLHKDVPKPIRQAAIQNFDSGSVPVLVCTDLGGRGLDIDSI 372

Query: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRR 707
             V +LD     F RS    I  +GR  R   +  +    T   +    + + + R
Sbjct: 373 EHVIMLD-----FPRSVIDYIHRVGRTGRAGKAGYVTSFMTKGDTTVYRMLQKSMR 423


>gi|311895413|dbj|BAJ27821.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054]
          Length = 594

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 5/119 (4%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D  +     A +  R+++ V TK  A+ L + L    +    +H      +R  ++   R
Sbjct: 313 DKAETTARIAARDGRVIMFVHTKHGADRLAKQLRAHGVVAAALHGGKSQPQRNRVLDQFR 372

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+   L+  N+   G+ I    LV  +D   +         +   GR AR   S  ++
Sbjct: 373 EGEVTALIATNVAARGIHIDGLDLVVNVDPPID-----HKDYLHRGGRTARAGESGTVV 426


>gi|227114116|ref|ZP_03827772.1| ATP-dependent RNA helicase DbpA [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 460

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 72/185 (38%), Gaps = 11/185 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR---PTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT    E+EQ    +  Q  R     G+ +  +E R   T  +     +     
Sbjct: 180 QTLLFSAT-YPEEIEQISARVQRQPQRFEIADGVEESAIEQRFYETTKDQRLPLLIAILG 238

Query: 581 --QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  + + + L  R I V  +H +++  +R +++         VLV 
Sbjct: 239 HYQPSSCVVFCNTKRDCQSVFDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVA 298

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   GLDI E  LV   +   +  +      +  IGR  R     + +   T  +  +
Sbjct: 299 TDVAARGLDIKELELVVNFELAFDPEVH-----VHRIGRTGRAGTKGLAVSLCTPQEMNR 353

Query: 699 LAIDE 703
             + E
Sbjct: 354 ANLIE 358


>gi|167041353|gb|ABZ06107.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
           HF4000_005I08]
          Length = 416

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 71/203 (34%), Gaps = 29/203 (14%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            R  T++ SAT     ++     ++   +R        VE   A T VE V   +    +
Sbjct: 179 KRRQTLLFSAT-MPKSVQGLAADLLSNPVR--------VEAAPASTTVEKVDQMVLFVPK 229

Query: 581 QGLR--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
              R              +L+   TK  A  +  YL++R I    +H       R   + 
Sbjct: 230 DKKRALLGELLNDKDMARVLIFTRTKHGANRVARYLHDRGIHSDAIHGNKAQNARQRALD 289

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA-ARNVNSK 685
             R G+   LV  ++   G+D+     V   D           S +  IGR         
Sbjct: 290 GFRSGRIRALVATDIAARGIDVEGVTHVINFD-----LPNDPESYVHRIGRTARAGAAGI 344

Query: 686 VILYADTITKSIQLAIDETTRRR 708
            I + D+  ++    I++T R++
Sbjct: 345 AISFCDSGERAHLRDIEKTIRQK 367


>gi|158520071|ref|YP_001527941.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus
           oleovorans Hxd3]
 gi|158508897|gb|ABW65864.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans
           Hxd3]
          Length = 464

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 80/230 (34%), Gaps = 21/230 (9%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
            +D S      +  +          + + GF      D R + +         T++ SAT
Sbjct: 191 LLDFSRRRAVMLKQVEILVIDEADRMLDMGFI----PDVRKIIYATPQKGNRQTLLFSAT 246

Query: 532 --------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
                     +W  +  Q  I  + +     VD  V I ++  ++  +Y+ I    Q   
Sbjct: 247 LTEAITRLASAWTRDPVQVAIEPEHV-AVDSVDQVVYIVTSDRKLALLYNIIVQ--QNLS 303

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R+L+    K     L + L    I+   +  +V   +R   + D + GK  VLV  +++ 
Sbjct: 304 RVLVFCNRKDAVSRLADRLTRYGIKCEILTGDVPQQKRSRRLEDFKSGKIRVLVATDVMA 363

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADT 692
            G+ + +   V   D             +  IGR  R       I +AD 
Sbjct: 364 RGIHVEDMDHVVNFD-----LPHDPEDYVHRIGRTGRAGAVGTSISFADE 408


>gi|78066825|ref|YP_369594.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
 gi|77967570|gb|ABB08950.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
          Length = 516

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 67/190 (35%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I ++Q +     +   V     R   + + D + 
Sbjct: 238 QTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIAQTVHYVDDRDHKDRLLDHLL 297

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  + ++   TK  A+ L   L +       +H ++    R   IR LR  +  VL
Sbjct: 298 -RDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARNRTIRALRERRVRVL 356

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S   +    +  +
Sbjct: 357 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGTAVSL--VHHA 409

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 410 EQGALKRIER 419


>gi|325187582|emb|CCA22119.1| predicted protein putative [Albugo laibachii Nc14]
 gi|325188860|emb|CCA23389.1| unknown putative [Albugo laibachii Nc14]
          Length = 417

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 63/190 (33%), Gaps = 27/190 (14%)

Query: 520 CLRPTTIVVSAT-------------PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
             +    + SAT                +E+     + ++ + +    V+   ++     
Sbjct: 214 AKKRQICLFSATFPVTVKAFKDRFIENPYEINLMDELTLKGVSQFYAFVEERQKVH---- 269

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
                 + +         I +   +    E L + + E      Y+H+++    R  +  
Sbjct: 270 ----CLNTLFSKLDINQSI-IFCNSVNRVELLAKKVTELGYSCFYIHAKMSQAHRNRVFH 324

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           + R G    LV  +L   G+DI    +V   D     F ++  + +  IGR+ R  +  +
Sbjct: 325 EFRNGATRHLVCSDLFTRGIDIQTVNVVINFD-----FPKNSETYLHRIGRSGRFGHLGL 379

Query: 687 ILYADTITKS 696
            +   T    
Sbjct: 380 AISMITYDDR 389


>gi|302186251|ref|ZP_07262924.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae 642]
          Length = 629

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|283771250|ref|ZP_06344139.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus H19]
 gi|283459455|gb|EFC06548.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus H19]
          Length = 506

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 15/193 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTG--LVDPPVE----IRSARTQVEDVYDEIN 576
            T++ SAT P + +    Q +   +II+     + DP +E    I     + +   + ++
Sbjct: 177 QTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLD 236

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++L
Sbjct: 237 --VHQPELAIIFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINIL 294

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLDI     V   D       +   S    IGR  R     + + + + I  
Sbjct: 295 VATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349

Query: 696 SIQLAIDETTRRR 708
                I++   R+
Sbjct: 350 DYIRQIEDANGRK 362


>gi|229148341|ref|ZP_04276624.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST24]
 gi|228635135|gb|EEK91682.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST24]
          Length = 481

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 67/185 (36%), Gaps = 11/185 (5%)

Query: 525 TIVVSAT-PGSWE-LEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINL--AA 579
           T++ SAT P   E L +        I I+  G+    +E        ++    +      
Sbjct: 180 TMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTI 239

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +     ++   T+   + +   L   N     +H  +   +R E++ D R GKF  LV  
Sbjct: 240 ENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQ 698
           ++   G+DI     V   D   E     K S +   GR  R  NS K I +         
Sbjct: 300 DVAARGIDIDNITHVINYDIPLE-----KESYVHRTGRTGRAGNSGKAITFITPYENRFL 354

Query: 699 LAIDE 703
             I+E
Sbjct: 355 EEIEE 359


>gi|225678019|gb|EEH16303.1| ATP-dependent RNA helicase dbp3 [Paracoccidioides brasiliensis
           Pb03]
          Length = 486

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 8/167 (4%)

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL---RILLTVLTKRMAEDLTEYLYER 605
           IR    +   VE+     +   +   +N   +      ++L+  L K+ A  +  ++  +
Sbjct: 285 IRANTRIKQIVEVLKPEDKEHRLLSLLNQYQRGKNAMDKVLVFCLYKKEATRIERFIRSK 344

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
             +V  +H ++   ER + +   + G   +LV  ++   GLDIP   LV  +      F 
Sbjct: 345 GFKVAGIHGDMNQTERFKSLDAFKSGAVPLLVATDVAARGLDIPAVRLVLNV-----TFP 399

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQL 712
            +    +  IGR  R     + +   T              +R KQ 
Sbjct: 400 LTVEDYVHRIGRTGRAGADGLAITMFTENDKALSGGLVNILKRAKQE 446


>gi|194208788|ref|XP_001916637.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19B isoform 3
           [Equus caballus]
          Length = 432

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   N   ++  
Sbjct: 222 QMLLFSAT-----FEDSVWKFAQKVVPDPNIIKLKRE-EETLDTIKQYYVLCNNRDEKFQ 275

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 276 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 335

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 336 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 394

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 395 MVDSKHSMNIL----NR---IQEHFNKK 415


>gi|160876752|ref|YP_001556068.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS195]
 gi|160862274|gb|ABX50808.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315268952|gb|ADT95805.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 419

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 86/225 (38%), Gaps = 40/225 (17%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-----RSARTQVEDVYDEIN 576
           R   ++ SAT         +G  V++  R   +++ P+EI     RS + ++       +
Sbjct: 178 RKQNMLFSATL--------EGGGVQRFAR--EVLNDPIEIDVEAPRSEKAKIHQWIHLAD 227

Query: 577 L------------AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
                          +   R ++ V T+ +   L   L +  I   +M  +++  +R + 
Sbjct: 228 DKEHKFALLCHLLRQEDVKRTIVFVKTRDIVSSLEGQLLKVGIPCAFMRGDMEQKKRFQA 287

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +     G+ +VL+  ++   G+DI +   V   D  +     S  + I  IGR  R    
Sbjct: 288 LSRFTKGEVNVLLATDVAARGIDIDDITHVINFDMPR-----SADTYIHRIGRTGRAGAK 342

Query: 685 K-VILYAD----TITKSIQLAIDETTRRREKQLEH--NKKHNINP 722
              I  A+     I   I+  I++  +RR  +     NK+    P
Sbjct: 343 GTAISLAEAHDMRIVGKIERYIEQPLKRRVIEELRPKNKEAR-TP 386


>gi|58266632|ref|XP_570472.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134110998|ref|XP_775963.1| hypothetical protein CNBD3700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74685735|sp|Q5KIK3|DRS1_CRYNE RecName: Full=ATP-dependent RNA helicase DRS1
 gi|50258629|gb|EAL21316.1| hypothetical protein CNBD3700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226705|gb|AAW43165.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 808

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 95/257 (36%), Gaps = 25/257 (9%)

Query: 521 LRPTTIVVSAT--PGSWEL-EQCQGIIVEQIIRP-----TGLVDPPVEIRSARTQVEDVY 572
               T++ SAT      EL +      +   + P      GL    V IRS  ++   + 
Sbjct: 402 RSRQTMLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTARGLTQEFVRIRSDDSRSPSLL 461

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
                  +   + ++   +K +A  +        ++   +H  +   +R++ + D + G 
Sbjct: 462 ALCKRTIR--EKCIIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQEQRLQALNDFKAGT 519

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
            D L+  +L   GLDI     V   D    G L   T  +    RA R   S V L  + 
Sbjct: 520 VDYLLATDLASRGLDIKGVETVINYDMP--GQLAQYTHRVGRTARAGRKGRS-VSLVGEA 576

Query: 693 ITKSIQLAIDETTRRREKQLEHNK-KHNINPQ---SVKEKIMEVIDPILLEDAATTNISI 748
             K ++ AI        KQ E ++ +H I P    +  ++ +E     + E         
Sbjct: 577 DRKMLKAAI--------KQAEADQVRHRIIPSEAVTAMKEKLEEFKDDIQEILKEEKEEK 628

Query: 749 DAQQLSLSKKKGKAHLK 765
             +Q  +  KKG+  ++
Sbjct: 629 LLRQADMEIKKGQNMVE 645


>gi|330999043|ref|ZP_08322768.1| cold-shock DEAD-box protein A [Parasutterella excrementihominis YIT
           11859]
 gi|329575785|gb|EGG57311.1| cold-shock DEAD-box protein A [Parasutterella excrementihominis YIT
           11859]
          Length = 586

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   T+   ++L E L  R   V  +H  +   +R  +++  R  + DV+V  ++   
Sbjct: 250 AIVFARTRNEVDELAESLRGRGYSVEPLHGGLDQAQRDRVMKRARAEQVDVIVATDVAAR 309

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           G+DI     V        G   S  + +  IGR  R       I   +     +   I+ 
Sbjct: 310 GIDIDHLTHVINF-----GIPSSAETYVHRIGRTGRAGREGTAITILEPRESRLLKNIER 364

Query: 704 TTRRR 708
            T+R+
Sbjct: 365 LTKRK 369


>gi|323934327|gb|EGB30747.1| DEAD/DEAH box helicase [Escherichia coli E1520]
          Length = 519

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +  E  L  Q  L  +  V  KR  + L E + E  +RV +++ E     R   +  L
Sbjct: 355 EAIVREALLYKQHSLNCMTLVRLKRHGQILMEMMKESGLRVDFIYGESNQTTRQAKLNSL 414

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--V 686
             G+ DVL+G  +L  G+D+P  G V +    K     ++  + Q +GR  R   ++  V
Sbjct: 415 ASGEIDVLIGSTILDVGVDVPSVGAVILAGGGK-----AEVEMRQRVGRGLRAKKNQANV 469

Query: 687 ILYADTITKSIQLAIDETTRRREK 710
               D I  S +  +  +  R+  
Sbjct: 470 CFITDFIDISNKYLLSHSYERKHI 493


>gi|317507502|ref|ZP_07965226.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
 gi|316254189|gb|EFV13535.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
          Length = 403

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 64/180 (35%), Gaps = 17/180 (9%)

Query: 523 PTTIVVSAT-PGS-WELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQV-------EDVYD 573
             T++ SAT PG    L +         IR  G    PV  R+ +          +++  
Sbjct: 176 KQTMLFSATIPGPVLTLARTFMTQPTH-IRAEGGDLAPVHERTTQHVYRAHALNKDELVS 234

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
               A  +G   ++   TKR A  L E L  R      +H ++    R E +   R GK 
Sbjct: 235 RFLQAEGRG-TTMIFTRTKRSAGKLAEELTLRGFNAGSLHGDMSQGAREEALSGFRKGKI 293

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
           ++LV  ++   G+DI     V             +   +  IGR  R   +   I   D 
Sbjct: 294 EILVCTDVAARGIDIDGITHVINY-----TCPEDEKVYVHRIGRTGRAGRTGNAITLVDW 348


>gi|256822194|ref|YP_003146157.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795733|gb|ACV26389.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 458

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 74/239 (30%), Gaps = 23/239 (9%)

Query: 463 EY------IPEDSLLFVDESHVTIPQISGMYRGDFHRKATLA--EYGFRLPSCMDNRPLR 514
           +Y        ++  + +      +         D +    L   E          +    
Sbjct: 113 DYKYQQAIFRDNPEIIIATPGRMLEH-CEKQGADLNDLEYLVIDEADKMFEMGFTDDVQA 171

Query: 515 FEEWNCLRPTTIVVSATPG--------SWELEQCQGIIVEQIIRPTGLVDPPVEIRSART 566
              +      T++ SAT           + +++ Q I++         ++  +       
Sbjct: 172 IAGFCKSDRQTLLFSATLKTKGIKHLTDYLMDEPQAIVLNSFEAKNDSIEQFIITADDLV 231

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
             E +   +    ++  + ++   TK   + L   +    I    +H ++    R  ++ 
Sbjct: 232 HKEKLTQWLL-TNEEYRKAIVFCNTKEQVDRLGGLIRYHKIAAGTLHGDISQSVRNHVMT 290

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
             R  K  VL+  ++   G+D+ +  LV   D        +    I  IGR AR   + 
Sbjct: 291 QFRDSKIKVLIASDVAARGIDVKDIDLVINFD-----MAHNAEDYIHRIGRTARAGETG 344


>gi|149910882|ref|ZP_01899514.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
 gi|149806036|gb|EDM66019.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
          Length = 397

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 19/192 (9%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE--DVYDEINLAAQ 580
            T++ SAT P   E+     +     I+ T        I  +   +E  +    +    +
Sbjct: 182 QTLLFSATMPAEIEILADAILTDPTKIQITAETVTIERINQSVYHLEKSNKVPLLLNILE 241

Query: 581 QGL--RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           +    ++L+   TK  A+ + E L E +I    +HS      R E +++ +     VLV 
Sbjct: 242 KSHYKKVLIFCKTKPGADIIVEALEEASITAASLHSGKTQAVREEALQNFKDSNLSVLVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV---------ILY 689
            ++   G+D+    LV   +           + I  IGR AR   S +         I  
Sbjct: 302 TDVAARGIDVDNITLVINYN-----LPEDPRNYIHRIGRTARAGKSGIAISFAVENDITL 356

Query: 690 ADTITKSIQLAI 701
            ++I KSI  AI
Sbjct: 357 LNSIEKSIGKAI 368


>gi|113969505|ref|YP_733298.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113884189|gb|ABI38241.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 409

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 66/177 (37%), Gaps = 10/177 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQI---IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
            T++ SAT         + ++ E     +         VE R      +   + ++   +
Sbjct: 182 QTLLFSATLDDSIFGFSKNLLREPKLIEVAKRNTTAAQVEQRVYAIDSDRKTEFVSHLVR 241

Query: 581 QG--LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                ++L+   TK+  + LT  L +  +  +  H ++    R ++++D + G   VLV 
Sbjct: 242 SKNWQQVLIFSRTKQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQVLVA 301

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            ++   GLDI +   V   +             I  IGR  R  ++ + +   +   
Sbjct: 302 TDVAARGLDIADLQYVINFELPFI-----AEDYIHRIGRTGRAGSTGLAITLFSQED 353


>gi|325663268|ref|ZP_08151718.1| hypothetical protein HMPREF0490_02459 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470722|gb|EGC73952.1| hypothetical protein HMPREF0490_02459 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 529

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 66/170 (38%), Gaps = 16/170 (9%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI------IRPTGLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      E+ +      E I      +    +     E++  + + E +   +
Sbjct: 180 QTVLFSATMPKAIMEITKKFQKNAEVIKVTKKELTVPNIEQFYYEVKP-KNKEEVLTRLL 238

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
           ++   +    ++   TK+  + L   L  R      +H ++K  +R  +++  R GK D+
Sbjct: 239 DIYTPK--LSVIFCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDI 296

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           LV  ++   G+D+ E   V   D       + +   +  IGR  R     
Sbjct: 297 LVATDVAARGIDVDEVEAVFNYD-----LPQDEEYYVHRIGRTGRAGRVG 341


>gi|313497676|gb|ADR59042.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida BIRD-1]
          Length = 440

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 98/283 (34%), Gaps = 27/283 (9%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS--------WELEQCQGIIVEQ 547
            + + GF      D   L  E     R  T++ SAT G           L+  + +++  
Sbjct: 156 RMLDMGF----AEDMERLCKEC--ENREQTLLFSATTGGAALRDIIGKVLKDPEHLMLNS 209

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           + +        +         E +   +  A +   + ++   T+ MA+ +  +L  +++
Sbjct: 210 VSQLAEGTRQQIITADHDQHKEQIAQWLL-ANETFDKAIIFTNTRAMADRIYGHLVAKDV 268

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +   +H E    +R   I   + G   VLV  ++   GLDI    LV   D  + G    
Sbjct: 269 KAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDVAARGLDIDGLDLVINFDMPRSG---- 324

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITK-----SIQLAIDETTRRREKQLEHNKKHNINP 722
               +  +GR  R     + +   T        SI+  + +   RR  +      +   P
Sbjct: 325 -DEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIERYLKQQFERRVIKEVKGTYNG--P 381

Query: 723 QSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
           + VK             +  T +    A++   +K K  A L 
Sbjct: 382 KKVKASGKAAGSKKKKVEKKTGDKKAAAKRKPTAKPKANAPLA 424


>gi|282909394|ref|ZP_06317209.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282326664|gb|EFB56962.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
          Length = 467

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 15/193 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTG--LVDPPVE----IRSARTQVEDVYDEIN 576
            T++ SAT P + +    Q +   +II+     + DP +E    I     + +   + ++
Sbjct: 138 QTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLD 197

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++L
Sbjct: 198 --VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINIL 255

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLDI     V   D       +   S    IGR  R     + + + + I  
Sbjct: 256 VATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 310

Query: 696 SIQLAIDETTRRR 708
                I++   R+
Sbjct: 311 DYIRQIEDANGRK 323


>gi|302412236|ref|XP_003003951.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
 gi|261357856|gb|EEY20284.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
          Length = 486

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 14/131 (10%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G   ++ + T    + L   L         +H ++    R+  +   R G  D+LV  ++
Sbjct: 301 GQTTIVFLRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGALNKFRAGSRDILVATDV 360

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYAD-----T 692
              GLDIP   +V   D       +   + I  +GR AR   S     ++   D      
Sbjct: 361 AARGLDIPNVDVVINYD-----LPQDSKTYIHRVGRTARAGKSGRALSLVTQYDLEIWLR 415

Query: 693 ITKSIQLAIDE 703
           I  S+   +DE
Sbjct: 416 IEASMGKKLDE 426


>gi|260365571|ref|ZP_05778108.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260877635|ref|ZP_05889990.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260895944|ref|ZP_05904440.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308085216|gb|EFO34911.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308090909|gb|EFO40604.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308114339|gb|EFO51879.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 417

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 101/314 (32%), Gaps = 48/314 (15%)

Query: 457 PPPTLFEYI-------PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
            P  L +++        +  +L +DE+   +            R         RLP   D
Sbjct: 130 TPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILR---------RLP--ND 178

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
            + + F      R  TI         E+E        + ++          +     + +
Sbjct: 179 KQIMLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQM--------VYPVDKKRK 230

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                  + ++   ++L+   TK+ +++L + L    I+   ++ +     R   + + +
Sbjct: 231 RELLAYLIGSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFK 290

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            GK   L+  ++   GLDI E   V   D   +         +  IGR  R   S   + 
Sbjct: 291 QGKVRALIATDVAARGLDIQELEQVVNFDMPFK-----AEDYVHRIGRTGRAGKSGLAVS 345

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                 + +  AI+    +R  Q                  +E  +P L+E+        
Sbjct: 346 LMSRDEEYLLRAIETLLDQRLPQEW----------------LEGFEPSLIEEVEPERDGG 389

Query: 749 DAQQLSLSKKKGKA 762
             ++   S+K+   
Sbjct: 390 GRRKSRSSEKRKLK 403


>gi|73996624|ref|XP_863165.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 9 [Canis familiaris]
          Length = 811

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 582 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 641

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 642 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 699

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 700 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 754

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 755 AITFLTKEDSAVFYELKQAILES 777


>gi|6324620|ref|NP_014689.1| Dbp5p [Saccharomyces cerevisiae S288c]
 gi|1708152|sp|P20449|DBP5_YEAST RecName: Full=ATP-dependent RNA helicase DBP5; AltName: Full=DEAD
           box protein 5; AltName: Full=Helicase CA5/6; AltName:
           Full=Ribonucleic acid-trafficking protein 8
 gi|160380623|sp|A6ZNQ1|DBP5_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP5; AltName: Full=DEAD
           box protein 5; AltName: Full=Helicase CA5/6; AltName:
           Full=Ribonucleic acid-trafficking protein 8
 gi|1353268|gb|AAB01679.1| Dbp5p [Saccharomyces cerevisiae]
 gi|1420175|emb|CAA99237.1| DBP5 [Saccharomyces cerevisiae]
 gi|151945675|gb|EDN63916.1| RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|285814935|tpg|DAA10828.1| TPA: Dbp5p [Saccharomyces cerevisiae S288c]
          Length = 482

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++ V TK+ A  L   L      V  +H +++T ER  +I D R G+  VL+  N+L  G
Sbjct: 334 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 393

Query: 646 LDIPECGLVAILDADKEGFLRSKTS-LIQTIGRAARNVNSKVI--LYADTITKSIQLAI 701
           +DIP   +V   D       ++  +  I  IGR  R     V      D  + +I  AI
Sbjct: 394 IDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAI 452


>gi|71747700|ref|XP_822905.1| ATP-dependent DEAD/H RNA helicase HEL64 [Trypanosoma brucei
           TREU927]
 gi|70832573|gb|EAN78077.1| ATP-dependent DEAD/H RNA helicase HEL64, putative [Trypanosoma
           brucei]
          Length = 568

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 62/169 (36%), Gaps = 13/169 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTG-----LVDPPVEIRSARTQVEDVYDEIN-- 576
            T++ SAT    E+++      +Q IR +        +  V  R   TQ     DE+   
Sbjct: 281 QTVMFSAT-WPREIQRLAAEFQKQWIRISVGSTELQANKDVTQRFILTQEFAKQDELRKL 339

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +   +  R+L+    KR A++L   L         +H + +  +R  I+   R      L
Sbjct: 340 MQEHREERVLVFCKMKRTADELERQLRRWGYDAMAIHGDKEQRQREFILARFRKDPRLCL 399

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
           V  ++   GLDI +   V   D     F       +  IGR  R     
Sbjct: 400 VATDVAARGLDIKQLETVINYD-----FPMQIDDYVHRIGRTGRAGAKG 443


>gi|329939625|ref|ZP_08288926.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus
           M045]
 gi|329301195|gb|EGG45090.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus
           M045]
          Length = 848

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 72/190 (37%), Gaps = 14/190 (7%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPT-----GLVDPPVEIRSARTQVEDVYDEI 575
           R  T++ SAT PG+      + +     IR T     G+    ++    R    D  + I
Sbjct: 228 RRQTMLFSATMPGAVISLARRYMSQPTHIRATSPEGEGVTLANIKQFVYRAHSMDKPEMI 287

Query: 576 NLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
               Q   R   ++   TKR A D+ E L +R      +H ++    R + +R  R GK 
Sbjct: 288 ARILQAEGRGLAMIFCRTKRTAADIAEQLQQRGFASGAVHGDLGQGAREQALRAFRNGKV 347

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADT 692
           DVLV  ++   G+D+     V    +        + + +   GR  R   S   I + D 
Sbjct: 348 DVLVCTDVAARGIDVEGVTHVINYQS-----PEDEKTYLHRTGRTGRAGASGTAITFVDW 402

Query: 693 ITKSIQLAID 702
                   I+
Sbjct: 403 DDIPRWQLIN 412


>gi|255728265|ref|XP_002549058.1| hypothetical protein CTRG_03355 [Candida tropicalis MYA-3404]
 gi|240133374|gb|EER32930.1| hypothetical protein CTRG_03355 [Candida tropicalis MYA-3404]
          Length = 531

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 71/179 (39%), Gaps = 20/179 (11%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPT----------GLVDPPVEIRSARTQVEDVYD 573
            T++ +AT    E+ +     ++  I+ T            +   VE+ +   + + + +
Sbjct: 296 QTLMFTAT-WPKEVRELANNFMKSPIKVTVGDRDELSANKRITQIVEVVNKFDKEKKLIN 354

Query: 574 EINLAAQQGL----RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            ++           +IL+  L K+ A  +   L     +V  +H ++   +R + +   +
Sbjct: 355 LLHKYQGNNNDSENKILVFALYKKEASRIENLLKRNRFQVAAIHGDLSQQQRTQALNSFK 414

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
            G+ ++L+  ++   GLDIP   +V  L      F  +    +  IGR  R   + +  
Sbjct: 415 SGQCNLLLATDVAARGLDIPNVKVVINL-----TFPLTIEDYVHRIGRTGRAGKTGIAH 468


>gi|229112867|ref|ZP_04242398.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock1-15]
 gi|296505875|ref|YP_003667575.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|228670546|gb|EEL25859.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock1-15]
 gi|296326927|gb|ADH09855.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 481

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 67/185 (36%), Gaps = 11/185 (5%)

Query: 525 TIVVSAT-PGSWE-LEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINL--AA 579
           T++ SAT P   E L +        I I+  G+    +E        ++    +      
Sbjct: 180 TMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTI 239

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +     ++   T+   + +   L   N     +H  +   +R E++ D R GKF  LV  
Sbjct: 240 ENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQ 698
           ++   G+DI     V   D   E     K S +   GR  R  NS K I +         
Sbjct: 300 DVAARGIDIDNITHVINYDIPLE-----KESYVHRTGRTGRAGNSGKAITFITPYENRFL 354

Query: 699 LAIDE 703
             I+E
Sbjct: 355 EEIEE 359


>gi|240994916|ref|XP_002404560.1| DEAD box protein abstrakt, putative [Ixodes scapularis]
 gi|215491582|gb|EEC01223.1| DEAD box protein abstrakt, putative [Ixodes scapularis]
          Length = 568

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 73/222 (32%), Gaps = 21/222 (9%)

Query: 490 DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
           D  R   L E    +    +        +   +  T++ SAT         +  +V+ I 
Sbjct: 282 DMCRYLCLDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPIT 341

Query: 550 RPTGL-------VDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYL 602
              G        V   VE      ++  + + +   A     +L+    K+  + + EYL
Sbjct: 342 VNVGRAGAASLDVVQEVEYVKQEAKIVHLLETLQKTAPP---VLIFAEKKQDVDAIHEYL 398

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
             + +    +H      ER   +   R  + DVLV  ++  +GLD      V   D    
Sbjct: 399 LLKGVEAVAIHGGKDQEERSRAVDAFRRAEKDVLVATDVASKGLDFENIQHVINYD---- 454

Query: 663 GFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
                  + +  IGR  R+    +          I  A DE+
Sbjct: 455 -MPEDIENYVHRIGRTGRSGRMGIATTF------INKACDES 489


>gi|305667396|ref|YP_003863683.1| DEAD/DEAH box helicase-like protein [Maribacter sp. HTCC2170]
 gi|88709444|gb|EAR01677.1| DEAD/DEAH box helicase-like protein [Maribacter sp. HTCC2170]
          Length = 432

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 15/189 (7%)

Query: 522 RPTTIVVSATPGSWELEQCQ---GIIVEQIIRPTGLVDPPVE----IRSARTQVEDVYDE 574
           +  ++  SAT     +   +   G      I+P       VE      +   +V+ +   
Sbjct: 180 KRQSLFFSATMPKDIVALSRTILGDFERVTIKPEQATAEKVEQLVYFVNKSNKVKLLVHL 239

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +         +L+   TK  A  + + L + +I    +H       R + + D + G+  
Sbjct: 240 LENRPNSS--VLVFSRTKHGANKIVKKLGQADIASAAIHGNKSQTARQKALGDFKAGELK 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTI 693
           VL+  ++   G+D+ +  LV   D           + +  IGR  R   S + I + D  
Sbjct: 298 VLIATDIAARGIDVDDLALVVNFD-----LPNVPETYVHRIGRTGRASASGIAISFCDRD 352

Query: 694 TKSIQLAID 702
            +     I+
Sbjct: 353 EQPYLRDIE 361


>gi|159116552|ref|XP_001708497.1| Eukaryotic initiation factor 4A [Giardia lamblia ATCC 50803]
 gi|157436609|gb|EDO80823.1| Eukaryotic initiation factor 4A [Giardia lamblia ATCC 50803]
          Length = 428

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 586 LLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREG 645
           ++   +K   + L   L ++      +H+++   +R   + + R GK  +L+  +LL  G
Sbjct: 306 VIFCNSKHTVDWLHNALRKQKHPCERIHADLPAFDRETTVANFRAGKTRLLISTDLLARG 365

Query: 646 LDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETT 705
            D+ +   V   D     F R   S +   GR  R     + +    +    Q  +D+  
Sbjct: 366 FDVQQVTFVCNYD-----FPRDPHSYMHRAGRCGRFGRKGLSVSL--LIAENQKCMDDVV 418

Query: 706 RRREKQLE 713
           ++ + ++E
Sbjct: 419 QKYKIEVE 426


>gi|323309653|gb|EGA62861.1| Irc3p [Saccharomyces cerevisiae FostersO]
          Length = 689

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 6/128 (4%)

Query: 571 VYDEINLAAQQGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           +   ++   ++ L+  LL  + K   + L +   +  I   Y+ S+ K +ER  II+  +
Sbjct: 266 LKTYLHKKQEKSLKSTLLFGVDKAHVQSLHKLFKDNGINTBYVTSDTKQIERDXIIQKFK 325

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G+ +VL+   +  EG D+P    + +    K     S++ LIQ IGR  R  +SK   +
Sbjct: 326 NGETEVLMNCGIFTEGTDMPNIDCILLCRPTK-----SRSLLIQMIGRGLRLHHSKDHCH 380

Query: 690 ADTITKSI 697
                 + 
Sbjct: 381 IIDFIGAS 388



 Score = 45.5 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR----------PAIVMAPN 202
           Q  AI   +  I    K   +   TG GKT   + +I  +++           ++++   
Sbjct: 37  QQDAIDACVNSIRQGTKRIGVSLATGGGKTVIFSNLINQLRQNYFKERQGNFKSLILVHR 96

Query: 203 KILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           + LA Q  +  K  FP   V   +  YD
Sbjct: 97  RELALQATATLKKIFPDLKVHIEMGKYD 124


>gi|318081433|ref|ZP_07988765.1| ATP-dependent RNA helicase [Streptomyces sp. SA3_actF]
          Length = 488

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 82/217 (37%), Gaps = 26/217 (11%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           A +  R ++ V T+  A+ + E L +  ++   +H  +    R  ++ D + G  +VLV 
Sbjct: 287 ASRKGRTIIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNVLVA 346

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
            ++   G+ +    LV  +D             +   GR AR   S  ++      +   
Sbjct: 347 TDVAARGIHVDGIDLVLNVDP-----AGDHKDYLHRSGRTARAGRSGTVVSLSLPHQ--- 398

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED--AATTNISIDAQQLSLS 756
                   RR+      +   ++  + + +I   +    L +   A +   + A+    S
Sbjct: 399 --------RRQIFRLM-EDAGVD--AARHQIGSAVFDAELAEITGARSMTEVQAESAGQS 447

Query: 757 KKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRL 793
            K+ +  ++ L +++  A        A+  R E  RL
Sbjct: 448 AKQAEREVEDLTRELERAKR-----RASEYRAEADRL 479


>gi|309797392|ref|ZP_07691785.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|308119016|gb|EFO56278.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
          Length = 519

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           E +  E  L  Q  L  +  V  KR  + L E + E  ++V +++ E     R   +  L
Sbjct: 355 EAIVREALLYKQHSLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLNSL 414

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--V 686
             G+ DVL+G  +L  G+D+P  G V +    K     ++  + Q +GR  R   ++  V
Sbjct: 415 ASGEIDVLIGSTILDVGVDVPSVGAVILAGGGK-----AEVEMRQRVGRGLRAKKNQANV 469

Query: 687 ILYADTITKSIQLAIDETTRRREK 710
               D I  S +  +  +  R+  
Sbjct: 470 CFITDFIDISNKYLLSHSYERKHI 493


>gi|302848249|ref|XP_002955657.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
           nagariensis]
 gi|300259066|gb|EFJ43297.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
           nagariensis]
          Length = 727

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 24/224 (10%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q   +  ++  +   G R ++   +K+ A +L+  L +  +  + +H ++    R + + 
Sbjct: 343 QRAGLLKDLITSYGAGGRTIIFTDSKKEAAELSVVLGDS-LGAQALHGDLAQSMREQTLD 401

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             R G+F VL+  ++   GLD+    LV ++D   +       + I   GR  R  +S  
Sbjct: 402 GFRKGRFPVLIATDVAARGLDVSGIELVLMVDPPAD-----WETYIHRSGRTGRAGSSGT 456

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKE-------KIMEVIDPILLE 739
            +   T      +AI E    R   ++  +     P  +          ++  +DP ++E
Sbjct: 457 CITLVTKKMEYMVAIIE---GRA-GMKFERIGAPQPADMARIAAERSLALLSEVDPAVVE 512

Query: 740 ---DAATTNISIDAQQLSLSKKKGKAHLKSLR--KQMHLAADNL 778
              DAA  ++   A       +     L  +   K+M   A +L
Sbjct: 513 HFRDAANRHLEEQAADGRDPAEALARALAKITGYKEMK--ARSL 554


>gi|297589855|ref|ZP_06948495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|297576983|gb|EFH95697.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
          Length = 517

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 15/193 (7%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTG--LVDPPVE----IRSARTQVEDVYDEIN 576
            T++ SAT P + +    Q +   +II+     + DP +E    I     + +   + ++
Sbjct: 188 QTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLD 247

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q    ++   TKR  ++LT  L  +  +   +H ++   +R+E+++  +  + ++L
Sbjct: 248 --VHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINIL 305

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLDI     V   D       +   S    IGR  R     + + + + I  
Sbjct: 306 VATDVAARGLDISGVSHVYNFD-----IPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 360

Query: 696 SIQLAIDETTRRR 708
                I++   R+
Sbjct: 361 DYIRQIEDANGRK 373


>gi|297379472|gb|ADI34359.1| ATP-dependent RNA helicase [Helicobacter pylori v225d]
          Length = 492

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 34/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++        +  H  +P++  +   D      + + GF     +D+    F+
Sbjct: 144 TPGRLLDHLKN------ERIHKFVPKVVVLDESD-----EMLDMGF-----LDDIEEIFD 187

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVY 572
                    ++ SAT     +++    I+E  I+    P+ + +  +  R       +  
Sbjct: 188 YLPSEA-QILLFSAT-MPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERA 245

Query: 573 DEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + I      Q   + ++   TK+ A++L ++L  +N +   +H ++   +R   I   + 
Sbjct: 246 EAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRVSIMAFKK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              DVLV  ++   GLDI     V            +  S I  IGR  R     + +  
Sbjct: 306 NDADVLVATDVASRGLDISGVSHVFNYH-----LPLNTESYIHRIGRTGRAGKKGMAITL 360

Query: 691 DTITK-----SIQLAID 702
            T  +      +Q  ID
Sbjct: 361 VTPLEYKELLRMQKEID 377


>gi|292487709|ref|YP_003530582.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora
           CFBP1430]
 gi|292898944|ref|YP_003538313.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291198792|emb|CBJ45901.1| putative ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291553129|emb|CBA20174.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora
           CFBP1430]
 gi|312171822|emb|CBX80079.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora ATCC
           BAA-2158]
          Length = 470

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 64/191 (33%), Gaps = 9/191 (4%)

Query: 522 RPTTIVVSATPGSW--ELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEIN 576
           +   ++ SAT       L +      EQ+    R T        +     + +     + 
Sbjct: 180 KRQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVDKKRKRELLSLL 239

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +      ++L+   TK  A  L E L +  I    +H       R   + D + GK  VL
Sbjct: 240 IGRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKDGKIRVL 299

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DI E   V   +             I   GRAA    +  ++  D     
Sbjct: 300 VATDIAARGIDIEELPHVVNYELP--NVPEDYVHRIGRTGRAAAVGEALSLVCVD--EHK 355

Query: 697 IQLAIDETTRR 707
           +   I+   +R
Sbjct: 356 LLRDIERVLKR 366


>gi|256786770|ref|ZP_05525201.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|289770661|ref|ZP_06530039.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|289700860|gb|EFD68289.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
          Length = 528

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 17/157 (10%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q ED        A +  R+++ + TK   + L ++L +  +R   +H      +R   + 
Sbjct: 279 QDEDKQRATIEIAARDGRVIMFLDTKHRVDRLVKHLLKSGVRAAGLHGGKSQPQRTRTLA 338

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             + G+   LV  N+   G+ +    LV  +D   +         +   GR AR   S  
Sbjct: 339 QFKDGQVTALVATNVAARGIHVDNLDLVVNVDPPGD-----HKDYLHRGGRTARAGESGS 393

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           ++   T  +           RRE     +    I PQ
Sbjct: 394 VVTLVTPDQ-----------RREMTRLMSLA-GITPQ 418


>gi|163789736|ref|ZP_02184173.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7]
 gi|159874958|gb|EDP69025.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7]
          Length = 423

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 15/196 (7%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP-VEI------RSARTQVEDVYD 573
            +  ++  SAT    E+E+  G I+   ++         VE+      R A+T   ++  
Sbjct: 177 KKRQSMFFSAT-MPTEIEKLAGTILSNPVKVVVNPVSSTVEVILQSVYRVAKTDKTNLLI 235

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKF 633
            +    +Q  R L+   TK  A  + + L +       +H       R + + + +  K 
Sbjct: 236 HLL-KNKQVERSLVFSRTKHGANKIVKKLLQAGFTAEAIHGNKSQNARQQALENFKTMKT 294

Query: 634 DVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADT 692
            VLV  ++   G+D+PE   V   D           + +  IGR  R   + K I + D 
Sbjct: 295 SVLVATDIAARGIDVPELSQVIQFD-----LPEVPETYVHRIGRTGRAGLSGKAISFCDE 349

Query: 693 ITKSIQLAIDETTRRR 708
               +   I++ ++R+
Sbjct: 350 TESDLLRDIEKLSKRK 365


>gi|73996616|ref|XP_534818.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 1 [Canis familiaris]
          Length = 801

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 19/203 (9%)

Query: 514 RFEEWNCLRPTTIVVSAT--PGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSART 566
            FE        T++ +AT  P    L +        +      +P   V+  V + S   
Sbjct: 572 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 631

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           + + +   +         I++ V  K+  + L + L +       +H      +R   + 
Sbjct: 632 KRKKLLAILEQGFDPP--IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 689

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
           +L+ G  D+LV  ++   G+DI +  +V   D  K     +    I  IGR  R   S V
Sbjct: 690 NLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK-----NIEDYIHRIGRTGRAGKSGV 744

Query: 687 ILYADTITKS-----IQLAIDET 704
            +   T   S     ++ AI E+
Sbjct: 745 AITFLTKEDSAVFYELKQAILES 767


>gi|117921774|ref|YP_870966.1| ATP-dependent RNA helicase SrmB [Shewanella sp. ANA-3]
 gi|117614106|gb|ABK49560.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 419

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 79/217 (36%), Gaps = 37/217 (17%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI-----RSARTQVEDVYDEIN 576
           R   ++ SAT     LE    I          +++ P+EI     R  + ++       +
Sbjct: 178 RKQNMLFSAT-----LEGSGVIRF-----AREVLNDPIEIDVDAPRKEKAKIHQWIHLAD 227

Query: 577 LAAQQ------------GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
               +              R ++ V T+ +   L   L +  I   +M  +++  +R + 
Sbjct: 228 DKEHKIALLCYLLKQEDVKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRGDMEQKKRFQA 287

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +     G+ +VL+  ++   G+DI +   V   D  +     S  S I  IGR  R    
Sbjct: 288 LSRFTKGEVNVLLATDVAARGIDIDDISHVINFDMPR-----SADSYIHRIGRTGRAGAK 342

Query: 685 K-VILYAD----TITKSIQLAIDETTRRREKQLEHNK 716
              I  A+     I   I+  I++  +RR  +    K
Sbjct: 343 GTAISLAEAHDMRIVGKIERYIEQPLKRRIIEELRPK 379


>gi|325266846|ref|ZP_08133517.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
 gi|324981587|gb|EGC17228.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
          Length = 452

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 70/186 (37%), Gaps = 15/186 (8%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIR----SARTQVEDVYDEIN 576
            T++ SAT  P   +L Q      E + +      +  VE          + + +   I 
Sbjct: 185 QTLLFSATFAPAIRKLAQDFMHSPEVVEVAAQNTTNANVEQHVIAVDTHRKRDLLERLIV 244

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
               Q  ++++   TK+ A+ +   L  R + V  +H +     R++++   + G   VL
Sbjct: 245 DLGMQ--QVIVFCKTKQSADQVARDLARRGLSVSAIHGDKSQQTRLDVLSQFKAGSLRVL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITK 695
           V  ++   GLDI E   V   +   +         +  IGR  R     V I   D   +
Sbjct: 303 VATDVAARGLDIAELPFVVNYEMPVQ-----AEDYVHRIGRTGRAGADGVAISMMDESEQ 357

Query: 696 SIQLAI 701
            +  AI
Sbjct: 358 KMYDAI 363


>gi|320322003|gb|EFW78099.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 625

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|307946857|ref|ZP_07662192.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
 gi|307770521|gb|EFO29747.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
          Length = 471

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 13/173 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE----QIIRPTGLVDPPVE-IRSARTQVEDVYDEINLA 578
            T+  SAT         +  +      ++ R +   +     +R+A  +  +    +   
Sbjct: 179 QTLFFSATMPPEIQRLTETFLQNPARVEVARTSSTSENISHYLRAAEGKDYEKRAVLREL 238

Query: 579 AQQGL---RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +        ++    KR    L   L      V  +H ++    R+ ++ + + G   +
Sbjct: 239 LEGAEDLNNAIVFCNRKRDISTLFRSLERHGYSVGSLHGDMDQRTRMTMLDNFKKGTIKL 298

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           L+  ++   GLDIPE   V   D             +  IGR  R   + V  
Sbjct: 299 LIASDVAARGLDIPEVSHVFNYDV-----PSHAEDYVHRIGRTGRAGRTGVAY 346


>gi|269959614|ref|ZP_06173995.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3]
 gi|269835672|gb|EEZ89750.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3]
          Length = 407

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 85/246 (34%), Gaps = 30/246 (12%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           ++D        I  +   +  R     + GF  P+   +R      W   R  T++ SAT
Sbjct: 139 YIDAERFDCRAIEWLILDEADRM---LDMGFA-PTV--DRLSNECRW---RKQTLLFSAT 189

Query: 532 PGSWELEQCQGIIVEQIIRPTGL-VDPPVEIRSARTQVEDVYDEINLA--------AQQG 582
               E +  +G   + +  P  +    P+  R    Q     D+             +Q 
Sbjct: 190 ---LEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADDAEHKLALLKHIITEQA 246

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++ + T+    +L   L    I   ++  E+    R   I   R G  +VL+  ++ 
Sbjct: 247 ERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFREGTVNVLLATDVA 306

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             G+D+P+   V   D  +     +    +  IGR AR       I   +   + +   +
Sbjct: 307 ARGIDLPDVSHVINYDMPR-----TADVYLHRIGRTARAGKKGNAISIVEAHDQPM---M 358

Query: 702 DETTRR 707
           D   R 
Sbjct: 359 DRVARY 364


>gi|237807743|ref|YP_002892183.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237500004|gb|ACQ92597.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 438

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 10/130 (7%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V T+    +L   L    I   ++  E++  +RIE +   R  +  +LV  ++  
Sbjct: 247 RSIIFVKTRERLAELVSQLQANGIDCAWLRGEMEQEKRIEALNRFRSDRVKILVATDVAS 306

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-----YADTITKSIQ 698
            G+D+P+   V   D  +     S  + I  IGR  R       +     +   + + ++
Sbjct: 307 RGIDLPDVSHVFNYDMPR-----SADTYIHRIGRTGRAGKKGCAINLIEAHDVGMMERVE 361

Query: 699 LAIDETTRRR 708
              +E   RR
Sbjct: 362 RYAEEKMMRR 371


>gi|194693390|gb|ACF80779.1| unknown [Zea mays]
          Length = 386

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 86/223 (38%), Gaps = 17/223 (7%)

Query: 470 LLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRF-EEWNCLRPTTIVV 528
           +L  DE+   + +    +R D  R     +      S    + L F   +N      +  
Sbjct: 132 ILVFDEADHMLAE--DGFRSDSERMMRDIQR-----SAGGCQVLLFSATFNDRVKDFVTK 184

Query: 529 SATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLT 588
               G+    + + + +E++          V++     ++E + D+I    Q+  ++++ 
Sbjct: 185 VIRDGNQIFVKKEELTLEKV------KQYKVQVPDESAKIEVIRDKIFEFGQKVGQVIIF 238

Query: 589 VLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI 648
           V TK+  +++   L   +     +   +   ER +II++ + G   VL+  ++L  G D 
Sbjct: 239 VRTKQSTKNVHNALTREDYVCSSIQGSLDQSEREKIIQEFKDGYTKVLISTDVLARGFDQ 298

Query: 649 PECGLVAILDADKEGFLRSKTS---LIQTIGRAARNVNSKVIL 688
            +  LV   D   +   R +      +  IGRA R      + 
Sbjct: 299 AQVNLVINYDMPIKFGTRDEPDYEVYLHRIGRAGRFGRKGAVF 341


>gi|313108824|ref|ZP_07794809.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
 gi|310881311|gb|EFQ39905.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
          Length = 441

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 77/201 (38%), Gaps = 17/201 (8%)

Query: 524 TTIVVSATPGSWELEQ--CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--YDEINLAA 579
            T++ SAT     L +   + +   Q++R   + +    +R      +DV   +++    
Sbjct: 178 QTLLFSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVITADDVAHKEQLLQWL 237

Query: 580 QQGL---RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  + ++   T+  A+ LT  L     +V  +H E    +R   I  L+ G   +L
Sbjct: 238 LSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKIL 297

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYADT 692
           V  ++   GLD+    LV   D  + G        +  IGR  R         +I + D 
Sbjct: 298 VATDVAARGLDVEGLDLVINFDMPRSG-----DEYVHRIGRTGRAGAEGLAISLICHGDW 352

Query: 693 -ITKSIQLAIDETTRRREKQL 712
            +  S++  + +   RR  + 
Sbjct: 353 NLMSSVERYLKQNFERRNIKE 373


>gi|288925923|ref|ZP_06419853.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17]
 gi|288337347|gb|EFC75703.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17]
          Length = 375

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/312 (17%), Positives = 99/312 (31%), Gaps = 60/312 (19%)

Query: 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTL 461
           EL +++ E        +  RL  R       +   G  + +E     L        P  L
Sbjct: 85  ELAIQIEE--CFKDYSKFTRL--RCCVIFGGVSQNGQVKELERGVDILI-----ATPGRL 135

Query: 462 FEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCL 521
            +         + +  +T+  I      +  R     + GF       +   +       
Sbjct: 136 LD--------LISQHIITLEHICHFVLDEADRM---LDMGFI------HDIKKLIPLLPK 178

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPP---VEIRSARTQVEDVYDEINLA 578
           R  T++ SAT            + E I + +  +      VE+    + V+ +   +   
Sbjct: 179 RRQTLLFSAT------------MPETIAKLSKSLLYKPARVEVAPVSSVVDTIEQRLYFV 226

Query: 579 AQ-------------QGLR-ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
            +              G R  L+   TK  A+ +   L  R+I    +H       R   
Sbjct: 227 EKPQKTDLLVSVLKNDGNRSALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRA 286

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           + + + GK  V+V  ++   G+DI    +V   D           + +  IGR  R  NS
Sbjct: 287 LTNFKSGKTRVIVATDIAARGIDIANLQMVINYD-----LPDVAETYVHRIGRTGRAGNS 341

Query: 685 KVILYADTITKS 696
            V L   T  + 
Sbjct: 342 GVALTFCTQDER 353


>gi|225016981|ref|ZP_03706173.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum
           DSM 5476]
 gi|224950247|gb|EEG31456.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum
           DSM 5476]
          Length = 563

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 91/243 (37%), Gaps = 28/243 (11%)

Query: 524 TTIVVSAT--PGSWELEQC--QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAA 579
            TI+ SAT  P    L +   +   + +I R    +D  +E +     +    D + +  
Sbjct: 182 QTILFSATMPPAILALTKQYQKDPQLIEINRKQVTLDN-IEQQFYEVPMGRKMDALGIIL 240

Query: 580 QQGLRIL--LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           Q     L  +   TKRM +++T +L         +H ++K  +R +++   + G+  +LV
Sbjct: 241 QYHDPALSIIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTKILV 300

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
             ++   G+D+     V   D       +++   +  IGR  R                 
Sbjct: 301 ATDVAARGIDVNNVDYVINYDV-----PQNQEYYVHRIGRTGRAGKEG------------ 343

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
             A+   + RR+    ++    +   ++K +   +     +E  +   +    +Q   + 
Sbjct: 344 -KAVTICSGRRQVDELYHIV-RMTKSTIKRE--SLPSGQDIERRSNEGVVARMEQKLAAA 399

Query: 758 KKG 760
           ++ 
Sbjct: 400 EEL 402


>gi|195377858|ref|XP_002047704.1| dead box protein 80 [Drosophila virilis]
 gi|194154862|gb|EDW70046.1| dead box protein 80 [Drosophila virilis]
          Length = 465

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 68/182 (37%), Gaps = 9/182 (4%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVED------VYDEIN 576
             +  SAT     ++  + I+ E  IIR     +    I+      ++          I 
Sbjct: 255 QMLFFSATYDKEVMDFARLIVSEPTIIRLMREEESLDNIKQYYVNCKNEDGKYNAIQNIY 314

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G   ++   T++ A  L   +      V  +  ++   +R+ ++   R G+  VL
Sbjct: 315 GCISIGQ-AIIFCHTRKTAAWLAAKMTADGHSVAVLSGDLTVEQRLAVLDRFRSGQEKVL 373

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKT-SLIQTIGRAARNVNSKVILYADTITK 695
           +  N+L  G+DI +  +V   D   +    +   + +  IGR  R   S + +      K
Sbjct: 374 ITTNVLSRGIDIEQVTIVVNFDLPVDLRGNADCETYLHRIGRTGRFGKSGIAINLIDGEK 433

Query: 696 SI 697
           S+
Sbjct: 434 SM 435


>gi|114663478|ref|XP_001170187.1| PREDICTED: hypothetical protein isoform 17 [Pan troglodytes]
          Length = 459

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 249 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 302

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 303 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 362

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 363 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 421

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 422 MVDSKHSMNIL----NR---IQEHFNKK 442


>gi|90110536|gb|ABD90550.1| DEAD box protein 80 [Drosophila virilis]
 gi|90110538|gb|ABD90551.1| DEAD box protein 80 [Drosophila virilis]
          Length = 465

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 68/182 (37%), Gaps = 9/182 (4%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVED------VYDEIN 576
             +  SAT     ++  + I+ E  IIR     +    I+      ++          I 
Sbjct: 255 QMLFFSATYDKEVMDFARLIVSEPTIIRLMREEESLDNIKQYYVNCKNEDGKYNAIQNIY 314

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                G   ++   T++ A  L   +      V  +  ++   +R+ ++   R G+  VL
Sbjct: 315 GCISIGQ-AIIFCHTRKTAAWLAAKMTADGHSVAVLSGDLTVEQRLAVLDRFRSGQEKVL 373

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKT-SLIQTIGRAARNVNSKVILYADTITK 695
           +  N+L  G+DI +  +V   D   +    +   + +  IGR  R   S + +      K
Sbjct: 374 ITTNVLSRGIDIEQVTIVVNFDLPVDLRGNADCETYLHRIGRTGRFGKSGIAINLIDGEK 433

Query: 696 SI 697
           S+
Sbjct: 434 SM 435


>gi|62862008|ref|NP_001015151.1| dead box protein 80, isoform B [Drosophila melanogaster]
 gi|51951138|gb|EAL24621.1| dead box protein 80, isoform B [Drosophila melanogaster]
          Length = 447

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 70/187 (37%), Gaps = 11/187 (5%)

Query: 524 TTIVVSATPGSWELEQCQGIIVE-QIIRPT-------GLVDPPVEIRSARTQVEDVYDEI 575
             +  SAT G   ++  + I+ +  IIR          +    V+ ++   +  +    I
Sbjct: 250 QMLFFSATYGKEVMDFARLIVADPTIIRLMREEESLENIKQYYVKCKNEEGK-YNAIQNI 308

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                 G   ++   TKR A  L   +      V  +  ++  ++R++++   R G   V
Sbjct: 309 YGCISVGQ-AIIFCHTKRTAAWLAAKMTSDGHSVAVLTGDLTVVQRLDVLDRFRSGLEKV 367

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKT-SLIQTIGRAARNVNSKVILYADTIT 694
           L+  N+L  G+DI +  +V   D   +    +   + +  IGR  R       ++     
Sbjct: 368 LITTNILSRGIDIEQVTIVVNFDLPVDLDGMADCETYLHRIGRTGRFGKKTKFVFIPVTL 427

Query: 695 KSIQLAI 701
           +     I
Sbjct: 428 RVNGYTI 434


>gi|325977801|ref|YP_004287517.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325177729|emb|CBZ47773.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 526

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 11/196 (5%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT       +        E + +    L    V+    R + +D +D +     
Sbjct: 176 QTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMD 235

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD +    D+LV 
Sbjct: 236 VDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R       I +        
Sbjct: 296 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGY 350

Query: 698 QLAIDETTRRREKQLE 713
              I++ T++R K L+
Sbjct: 351 LSIIEKLTKKRMKGLK 366


>gi|320166584|gb|EFW43483.1| Ddx52 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 256

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 7/127 (5%)

Query: 575 INLAAQQGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           I    Q+G+R  IL+ V +   A+ L   +    + V  +H+E  +LER   I++ R GK
Sbjct: 23  IQQMIQKGVRPPILVFVQSVDRAKQLHREMLYEKMNVDVIHAERTSLERETAIKNFRTGK 82

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
              L+   LL  G+D     LV   D     F ++  S I  IGR  R       +   T
Sbjct: 83  TWFLIATELLARGMDFKGVNLVINFD-----FPQTAESYIHRIGRTGRAGRPGEAITFFT 137

Query: 693 ITKSIQL 699
              SI L
Sbjct: 138 KEDSINL 144


>gi|257464721|ref|ZP_05629092.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           202]
 gi|257450381|gb|EEV24424.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           202]
          Length = 604

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 30/185 (16%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TK    D+ E       R   ++ ++    R + +  L+ G+ D++V  ++   
Sbjct: 248 AIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQSREQALDKLKSGRLDIIVATDVAAR 307

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+DI    LV   D           S +  IGR  R   S   L                
Sbjct: 308 GIDIDRISLVVNYD-----IPLDAESYVHRIGRTGRAGRSGRALLFVEP----------- 351

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
              RE++L  N +H          I + ID + + +         A+  +  +K+ + H 
Sbjct: 352 ---RERRLLRNIEH---------LIKKPIDEVAIPNHEILMEKRRAKFKARIEKQLEHH- 398

Query: 765 KSLRK 769
             L K
Sbjct: 399 -DLEK 402


>gi|254778953|ref|YP_003057058.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
           pylori B38]
 gi|254000864|emb|CAX28796.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
           pylori B38]
          Length = 492

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 34/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++        +  H  +P++  +   D      + + GF     +D+    F+
Sbjct: 144 TPGRLLDHLKN------ERIHKFVPKVVVLDESD-----EMLDMGF-----LDDIEEIFD 187

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVY 572
                    ++ SAT     +++    I+E  I+    P+ + +  +  R       +  
Sbjct: 188 YLPSEA-QILLFSAT-MPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERA 245

Query: 573 DEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + I      Q   + ++   TK+ A++L ++L  +N +   +H ++   +R   I   + 
Sbjct: 246 EAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              DVLV  ++   GLDI     V            +  S I  IGR  R     + +  
Sbjct: 306 NDADVLVATDVASRGLDISGVSHVFNYH-----LPLNTESYIHRIGRTGRAGKKGMAITL 360

Query: 691 DTITK-----SIQLAID 702
            T  +      +Q  ID
Sbjct: 361 VTPLEYKELLRMQKEID 377


>gi|170782512|ref|YP_001710845.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169157081|emb|CAQ02256.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 761

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 78/223 (34%), Gaps = 24/223 (10%)

Query: 496 TLAEYGFRLPSCM-------DNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548
            + + GF  P          D + L F         T+V    P     E          
Sbjct: 537 HMCDLGFLEPVQRILRQVKKDGQRLLFSATLDKGVATLVNEFLPSPSVHEVAGEDQASST 596

Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
           I    L+   +E R       D    I   +    + L+   T+  AE L + L +  I 
Sbjct: 597 IDHRVLL---IEQR-------DKAAIIEQLSSGEGKTLIFARTRAFAEQLADQLEDAGIP 646

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H ++    R   ++ L  GK  VLV  ++   G+ + + GLV   DA  E      
Sbjct: 647 ATSLHGDLNQARRTRNLQLLTSGKVRVLVATDVAARGIHVDDIGLVIQADAPDE-----Y 701

Query: 669 TSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQ 711
            S +   GR  R      ++    ITK+ +  +D+   R E +
Sbjct: 702 KSYLHRAGRTGRAGKQGTVVTL--ITKARRRRMDDLLGRAEIK 742


>gi|149511217|ref|XP_001519340.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 757

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 91/254 (35%), Gaps = 28/254 (11%)

Query: 523 PTTIVVSATPGSWELE------QCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
           P T++ SAT   W  +      + +   V+ I + T      VE  + +         I 
Sbjct: 355 PQTLLFSATCPHWVYDVAKKYMKVKYEQVDLIGKKTQKTAMTVEHLAIKCHWAQRAAVIG 414

Query: 577 LAAQ----QGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
              Q       R ++   TK+ A +L+     +    + +H ++   +R   ++  R G 
Sbjct: 415 TVIQVYSGTHGRTIVFCRTKKEATELSLSPAIKQ-DAQSLHGDIPQKQREITLKGFRSGA 473

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  N+   GLDIPE  LV               S I   GR  R   + + +    
Sbjct: 474 FGVLVATNVAARGLDIPEVDLVVQSSP-----PEDVESYIHRSGRTGRAGRTGICVCFYQ 528

Query: 693 ITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQ 752
             +  QL+          Q+E  +K  I  + +       +     +D   +  SI    
Sbjct: 529 AKEEYQLS----------QVE--QKAGITFKRIGVPTTSEVVKASSKDVLRSLDSIPLHA 576

Query: 753 LSLSKKKGKAHLKS 766
           ++  K+  +  ++ 
Sbjct: 577 INYFKQPARELIEE 590


>gi|308802996|ref|XP_003078811.1| putative RNA helicase (ISS) [Ostreococcus tauri]
 gi|116057264|emb|CAL51691.1| putative RNA helicase (ISS) [Ostreococcus tauri]
          Length = 693

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 73/184 (39%), Gaps = 16/184 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIV----------EQIIRPTGLVDPPVEIRSARTQVEDVYD 573
            T++ SAT  SW  +  +  +           ++  + +G V   +       +V+ V D
Sbjct: 266 QTLLFSATLPSWVKDISKRFLKPNYSTVDLVGDEKQKASGAVQHMLLPCQWSDRVDLVCD 325

Query: 574 EINLAAQQGLRILLTVLTKRMAEDLTEYLY-ERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
            I   A  G R+++   TKR   +L + L  E     + +H +V   +R  ++   R  K
Sbjct: 326 VIRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVSQSQREVVLSLFREDK 385

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
           F VLV  ++   GLDI    LV   +  K+       + I   GR  R   + + +   T
Sbjct: 386 FQVLVATDVAARGLDITGVELVIQCEPPKD-----AETYIHRSGRTGRAGATGISVTLCT 440

Query: 693 ITKS 696
               
Sbjct: 441 PRNE 444


>gi|21222144|ref|NP_627923.1| DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
 gi|7210999|emb|CAB76979.1| putative DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
          Length = 528

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 17/157 (10%)

Query: 567 QVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
           Q ED        A +  R+++ + TK   + L ++L +  +R   +H      +R   + 
Sbjct: 279 QDEDKQRATIEIAARDGRVIMFLDTKHRVDRLVKHLLKSGVRAAGLHGGKSQPQRTRTLA 338

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
             + G+   LV  N+   G+ +    LV  +D   +         +   GR AR   S  
Sbjct: 339 QFKDGQVTALVATNVAARGIHVDNLDLVVNVDPPGD-----HKDYLHRGGRTARAGESGS 393

Query: 687 ILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723
           ++   T  +           RRE     +    I PQ
Sbjct: 394 VVTLVTPDQ-----------RREMTRLMSLA-GITPQ 418


>gi|302695203|ref|XP_003037280.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
 gi|300110977|gb|EFJ02378.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
          Length = 771

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 21/249 (8%)

Query: 524 TTIVVSAT--PGSWEL-EQCQGIIVEQIIRPT-----GLVDPPVEIRSARTQVEDVYDEI 575
            T++ SAT      EL        V   + P      GL+   V +R+ R +        
Sbjct: 360 QTMLFSATMTDSVDELVRMSLDKPVRLFVDPKRSTAKGLIQEFVRVRAGREKERSPLLVA 419

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
                   R+++ V +K++A  L        ++   +H ++   +R+  ++  R G  D 
Sbjct: 420 LCTRTFKTRVIIFVRSKKLAHQLRIVFGLVGLKCGELHGDLSQEQRLNALQQFRDGTVDY 479

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADTI 693
           L+  +L   GLDI     V   D   +         +  +GR AR       V L  +  
Sbjct: 480 LMATDLASRGLDIKGVETVINYDMPGQ-----LAQYLHRVGRTARAGKKGRSVTLVGEGD 534

Query: 694 TKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQL 753
            K ++ AI  +T + +       +H   P  V  K  E ++ +  E +       + +Q+
Sbjct: 535 RKMLKAAIKHSTGQDQI------RHRTVPPEVVAKWTEKLEGLKDEISEILKEEKEEKQI 588

Query: 754 SLSKKKGKA 762
             ++ + + 
Sbjct: 589 QQAEMELRK 597


>gi|257080658|ref|ZP_05575019.1| DEAD box family helicase [Enterococcus faecalis E1Sol]
 gi|256988688|gb|EEU75990.1| DEAD box family helicase [Enterococcus faecalis E1Sol]
          Length = 534

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 66/329 (20%), Positives = 113/329 (34%), Gaps = 34/329 (10%)

Query: 465 IPEDSL--LFVDESHVTIPQISGMYRGDFHRKATLAEYGF-RLPSCMDNRPLRFEEWNCL 521
            P D    + VDE+H  I +        F     L   G    P   D R L    +  L
Sbjct: 111 FPPDYFDTIVVDEAHHCISEGYQRVLKHFDESNVL---GVTATPDRGDMRNLG-SYFESL 166

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
                +V A   G     +   I ++  +            +   T ++   ++I     
Sbjct: 167 AYEYSLVQAIKEGYLSPIKALTIPLKLDLSGVKQQTGDFSTKDLGTALDPYLEQIAEEMV 226

Query: 581 Q---GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
           +     + ++ +   + ++   + L  +  R   ++ + K  +R EI+ D    K++VL 
Sbjct: 227 KHCINRKTVVFLPLVKTSKKFRDILNSKGFRAAEVNGDSK--DRQEILEDFDNDKYNVLC 284

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
              LL EG D P    V +L   K   L S     Q IGR  R    K  L         
Sbjct: 285 NSMLLTEGWDCPSVDCVVVLRPTKVRSLYS-----QMIGRGTRLFPGKEELLLLDF---- 335

Query: 698 QLAIDETTRRREKQLEHNKKHNI-NPQSVKEKIMEVIDPILLE----DAATTNISIDAQQ 752
              +  T R        +  H I N   V +K+ E I+    +    D     +  +   
Sbjct: 336 ---LWHTERH----ELCHPAHLIANSDEVAKKMTENIEEAGAQGFAMDIEEAEVQAEKDV 388

Query: 753 LSLSKKKGKAHLKSLRKQMHLAADNLNFE 781
           ++  ++     L+ +RK+     D L FE
Sbjct: 389 IAEREEALAKQLEEMRKRKRKLVDPLQFE 417


>gi|240949643|ref|ZP_04753978.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           NM305]
 gi|240295901|gb|EER46577.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           NM305]
          Length = 604

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 30/185 (16%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TK    D+ E       R   ++ ++    R + +  L+ G+ D++V  ++   
Sbjct: 248 AIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQSREQALDKLKSGRLDIIVATDVAAR 307

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+DI    LV   D           S +  IGR  R   S   L                
Sbjct: 308 GIDIDRISLVVNYD-----IPLDAESYVHRIGRTGRAGRSGRALLFVEP----------- 351

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
              RE++L  N +H          I + ID + + +         A+  +  +K+ + H 
Sbjct: 352 ---RERRLLRNIEH---------LIKKPIDEVAIPNHEILMEKRRAKFKARIEKQLEHH- 398

Query: 765 KSLRK 769
             L K
Sbjct: 399 -DLEK 402


>gi|222623996|gb|EEE58128.1| hypothetical protein OsJ_09027 [Oryza sativa Japonica Group]
          Length = 575

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 19/186 (10%)

Query: 522 RPTTIVVSAT--PGSWELEQC-------QGIIVEQIIRPTGLVDPPVEI---RSARTQVE 569
              T++ SAT  P   +L Q        + +I  + +     V   VE+   RS  +++ 
Sbjct: 335 VRQTVMFSATWPPAVHQLAQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRSRDSRLV 394

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + D+      Q  R+L+ VL KR A  +   L  R      +H +    +R + +   +
Sbjct: 395 ALLDK--YHKAQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFK 452

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   +++  ++   GLDIP+  +V         +  +    +  IGR  R     V   
Sbjct: 453 EGSCPLMIATDVASRGLDIPDVEVVINYS-----YPLTTEDYVHRIGRTGRAGKKGVAHT 507

Query: 690 ADTITK 695
             T   
Sbjct: 508 FFTQEN 513


>gi|170580933|ref|XP_001895467.1| DEAD/DEAH box helicase family protein [Brugia malayi]
 gi|158597570|gb|EDP35685.1| DEAD/DEAH box helicase family protein [Brugia malayi]
          Length = 798

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 48/116 (41%), Gaps = 3/116 (2%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   T++ AE L   + +R   V  +H E+   +R   I+  +   + VL+  N+   
Sbjct: 650 AIIFCYTRKSAEWLAARMSQRGHDVTVLHGEMTIEDRARTIQQFKDSIYKVLITTNVCAR 709

Query: 645 GLDIPECGLVAILDADK---EGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697
           G+D+ +  +V   D      +       + I  IGR  R   + + +   +   S+
Sbjct: 710 GIDVSQVSVVINYDPPVTFADNPQPDYETYIHRIGRTGRFGKAGIAINLVSDDFSL 765


>gi|157736671|ref|YP_001489354.1| transcription-repair coupling factor [Arcobacter butzleri RM4018]
 gi|157698525|gb|ABV66685.1| transcription-repair coupling factor [Arcobacter butzleri RM4018]
          Length = 995

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 79/217 (36%), Gaps = 26/217 (11%)

Query: 190 EAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKES 249
           E   +   ++  N    AQ+ S+  ++               ++P         + +   
Sbjct: 14  EKRLKECQLLIVNDDRQAQIASDIVSYLG-------------FKPFLLADFRANFGDDLL 60

Query: 250 SINEQIDRMRHSATRSL-----LERNDCIVVSSVSCI-YGIGSVESYSQMIVQLKIGDSV 303
           S +E++    H  T++L      ++ D I++S +  I Y +   +        +   D +
Sbjct: 61  SFSEEL----HEITKTLGDFYSYKKQDKILISPIRTISYPL--PKEKCFESFTINFADRL 114

Query: 304 EQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEF 363
             +EL S L    Y   DI    G   + GD ++I P    D  +RVS+F +++E I +F
Sbjct: 115 NLEELKSKLYNWGYYFVDIVTSEGEVSLRGDILDICP-LGSDFGYRVSLFDDEVESIRKF 173

Query: 364 YPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK 400
                +  +          +       T     + I+
Sbjct: 174 DIEDQKSSKEEIESFSINPAFLALDEATFEEINEQIQ 210



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 8/110 (7%)

Query: 606 NIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFL 665
           NI++  +HS++K  +  +II      +FD+L+  +++  G+ +P    + I  AD+ G  
Sbjct: 718 NIKIDIIHSQIKPEQAEKIIEAFENKEFDILLATSIVESGIHLPNANSIIIDGADRFGI- 776

Query: 666 RSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDETTRRREKQLEHN 715
                L Q  GR  R+       Y        + +I +   +R   LE N
Sbjct: 777 ---ADLHQLRGRVGRSNKEGYCYYVVED----KKSITDDAVKRLVALESN 819



 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 4/114 (3%)

Query: 108 RLIQSDNPLLKNGKIWTPHRSWSINNHSKDITFFQMQTDYHPSGDQPAAIAQLLKGIHSR 167
           +L    N ++K            IN   K +  FQ    +  + DQ  +I ++L  + S 
Sbjct: 445 KLFAIANDIIKLAAARELVNGIKINTDKKVLEDFQKSAGFEYTKDQKRSIKEILDDLSSG 504

Query: 168 E-KVQLLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFF 217
               +LL G  G GKT      + A+       I + P  +LA Q Y   +   
Sbjct: 505 RVMDRLLSGDVGFGKTEVAMNALLAVILDGYQTIFVCPTTLLATQHYHSIQKRL 558


>gi|32352202|dbj|BAC78594.1| RNA helicase [Oryza sativa Japonica Group]
          Length = 408

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 19/186 (10%)

Query: 522 RPTTIVVSAT--PGSWELEQC-------QGIIVEQIIRPTGLVDPPVEI---RSARTQVE 569
              T++ SAT  P   +L Q        + +I  + +     V   VE+   RS  +++ 
Sbjct: 168 VRQTVMFSATWPPAVHQLAQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRSRDSRLV 227

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + D+      Q  R+L+ VL KR A  +   L  R      +H +    +R + +   +
Sbjct: 228 ALLDK--YHKAQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFK 285

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   +++  ++   GLDIP+  +V         +  +    +  IGR  R     V   
Sbjct: 286 EGSCPLMIATDVASRGLDIPDVEVVINYS-----YPLTTEDYVHRIGRTGRAGKKGVAHT 340

Query: 690 ADTITK 695
             T   
Sbjct: 341 FFTQEN 346


>gi|15644875|ref|NP_207045.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori 26695]
 gi|2313340|gb|AAD07315.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Helicobacter
           pylori 26695]
          Length = 492

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 34/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++        +  H  +P++  +   D      + + GF     +D+    F+
Sbjct: 144 TPGRLLDHLKN------ERIHKFVPKVVVLDESD-----EMLDMGF-----LDDIEEIFD 187

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVY 572
                    ++ SAT     +++    I+E  I+    P+ + +  +  R       +  
Sbjct: 188 YLPSEA-QILLFSAT-MPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERA 245

Query: 573 DEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + I      Q   + ++   TK+ A++L ++L  +N +   +H ++   +R   I   + 
Sbjct: 246 EAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              DVLV  ++   GLDI     V            +  S I  IGR  R     + +  
Sbjct: 306 NDADVLVATDVASRGLDISGVSHVFNYH-----LPLNTESYIHRIGRTGRAGKKGMAITL 360

Query: 691 DTITK-----SIQLAID 702
            T  +      +Q  ID
Sbjct: 361 VTPLEYKELLRMQKEID 377


>gi|15598662|ref|NP_252156.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|254236418|ref|ZP_04929741.1| hypothetical protein PACG_02400 [Pseudomonas aeruginosa C3719]
 gi|9949609|gb|AAG06854.1|AE004767_5 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|126168349|gb|EAZ53860.1| hypothetical protein PACG_02400 [Pseudomonas aeruginosa C3719]
          Length = 446

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 77/201 (38%), Gaps = 17/201 (8%)

Query: 524 TTIVVSATPGSWELEQ--CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--YDEINLAA 579
            T++ SAT     L +   + +   Q++R   + +    +R      +DV   +++    
Sbjct: 183 QTLLFSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVITADDVAHKEQLLQWL 242

Query: 580 QQGL---RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  + ++   T+  A+ LT  L     +V  +H E    +R   I  L+ G   +L
Sbjct: 243 LSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKIL 302

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYADT 692
           V  ++   GLD+    LV   D  + G        +  IGR  R         +I + D 
Sbjct: 303 VATDVAARGLDVEGLDLVINFDMPRSG-----DEYVHRIGRTGRAGAEGLAISLICHGDW 357

Query: 693 -ITKSIQLAIDETTRRREKQL 712
            +  S++  + +   RR  + 
Sbjct: 358 NLMSSVERYLKQNFERRNIKE 378


>gi|115471651|ref|NP_001059424.1| Os07g0301200 [Oryza sativa Japonica Group]
 gi|75325214|sp|Q6YS30|RH5_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 5
 gi|34394349|dbj|BAC84904.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113610960|dbj|BAF21338.1| Os07g0301200 [Oryza sativa Japonica Group]
          Length = 512

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 19/186 (10%)

Query: 522 RPTTIVVSAT--PGSWELEQC-------QGIIVEQIIRPTGLVDPPVEI---RSARTQVE 569
              T++ SAT  P   +L Q        + +I  + +     V   VE+   RS  +++ 
Sbjct: 272 VRQTVMFSATWPPAVHQLAQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRSRDSRLV 331

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            + D+      Q  R+L+ VL KR A  +   L  R      +H +    +R + +   +
Sbjct: 332 ALLDK--YHKAQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFK 389

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   +++  ++   GLDIP+  +V         +  +    +  IGR  R     V   
Sbjct: 390 EGSCPLMIATDVASRGLDIPDVEVVINYS-----YPLTTEDYVHRIGRTGRAGKKGVAHT 444

Query: 690 ADTITK 695
             T   
Sbjct: 445 FFTQEN 450


>gi|327439299|dbj|BAK15664.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 481

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 6/126 (4%)

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +     ++   TK   + L +YLY+R   V  +H  +    R+ ++ D + G F  LV 
Sbjct: 237 VENPDTCIIFCRTKDRVDALHDYLYDREYSVDKLHGGMDQSTRLLVMNDYKRGDFRYLVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSI 697
            ++   G+DI    LV   D   E     K + +   GR  R     K + +        
Sbjct: 297 TDVAARGIDIENISLVINYDLPME-----KEAYVHRTGRTGRAGKEGKAVTFVTPFEHDF 351

Query: 698 QLAIDE 703
              I+E
Sbjct: 352 LAGIEE 357


>gi|302419543|ref|XP_003007602.1| ATP-dependent RNA helicase DED1 [Verticillium albo-atrum VaMs.102]
 gi|261353253|gb|EEY15681.1| ATP-dependent RNA helicase DED1 [Verticillium albo-atrum VaMs.102]
          Length = 582

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 8/140 (5%)

Query: 539 QCQGIIVEQIIRPTGLVDPPVEIRS--ARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
             Q  +         ++   VE+     RT +++V + ++       R ++ V +KR+A+
Sbjct: 343 HSQINVGRIGSTHGNILQRVVEVLPETKRTVLKEVIEALDPC-----RTIIFVNSKRVAD 397

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAI 656
           +L ++L+        MHS+   LER   +R  R G   +LV   ++  G+D+     V  
Sbjct: 398 ELDDFLFNSGYPCTSMHSDRTQLEREGAMRAFRAGTSPILVATGVMARGIDVRNVNHVIN 457

Query: 657 LDADKEGFLRSKTSLIQTIG 676
            D             +  IG
Sbjct: 458 YDLPSVDHG-GIEEYVHRIG 476


>gi|218233461|ref|YP_002370229.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|229153612|ref|ZP_04281789.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1550]
 gi|218161418|gb|ACK61410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228629841|gb|EEK86493.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1550]
          Length = 481

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 67/185 (36%), Gaps = 11/185 (5%)

Query: 525 TIVVSAT-PGSWE-LEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINL--AA 579
           T++ SAT P   E L +        I I+  G+    +E        ++    +      
Sbjct: 180 TMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTI 239

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +     ++   T+   + +   L   N     +H  +   +R E++ D R GKF  LV  
Sbjct: 240 ENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQ 698
           ++   G+DI     V   D   E     K S +   GR  R  NS K I +         
Sbjct: 300 DVAARGIDIDNITHVINYDIPLE-----KESYVHRTGRTGRAGNSGKAITFITPYENRFL 354

Query: 699 LAIDE 703
             I+E
Sbjct: 355 EEIEE 359


>gi|119572213|gb|EAW51828.1| hCG2043426, isoform CRA_b [Homo sapiens]
          Length = 479

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 269 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 322

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 323 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 382

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 383 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 441

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 442 MVDSKHSMNIL----NR---IQEHFNKK 462


>gi|85014443|ref|XP_955717.1| ATP-dependent RNA helicase [Encephalitozoon cuniculi GB-M1]
 gi|74654409|sp|Q8SQK9|DHH1_ENCCU RecName: Full=ATP-dependent RNA helicase DHH1
 gi|19171411|emb|CAD27136.1| putative ATP-DEPENDENT RNA HELICASE (DEAD box family)
           [Encephalitozoon cuniculi GB-M1]
          Length = 489

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 9/153 (5%)

Query: 551 PTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
           P G+      ++ +   +      + L+  Q    ++   + +  E L   + E  +   
Sbjct: 317 PVGVKQFYTYVKPSEKLLCLKSLLLRLSINQ---CVIFCNSIKTVELLAMKITEMGLPSY 373

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
           ++HS++   +R  +  +   GK  +LV  +L+  G+D P    V   D  K     S  S
Sbjct: 374 FIHSKMAQEDRNIVFHNFLKGKCKILVATDLITRGVDAPNTNYVINFDISK-----SPES 428

Query: 671 LIQTIGRAARNVNSKV-ILYADTITKSIQLAID 702
            +  IGRA R     V I    T  K + + I+
Sbjct: 429 YLHRIGRAGRFGAPGVAISLVTTEEKEMLMDIE 461


>gi|107102999|ref|ZP_01366917.1| hypothetical protein PaerPA_01004068 [Pseudomonas aeruginosa PACS2]
 gi|296388016|ref|ZP_06877491.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 441

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 77/201 (38%), Gaps = 17/201 (8%)

Query: 524 TTIVVSATPGSWELEQ--CQGIIVEQIIRPTGLVDPPVEIRSARTQVEDV--YDEINLAA 579
            T++ SAT     L +   + +   Q++R   + +    +R      +DV   +++    
Sbjct: 178 QTLLFSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVITADDVAHKEQLLQWL 237

Query: 580 QQGL---RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  + ++   T+  A+ LT  L     +V  +H E    +R   I  L+ G   +L
Sbjct: 238 LSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKIL 297

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK----VILYADT 692
           V  ++   GLD+    LV   D  + G        +  IGR  R         +I + D 
Sbjct: 298 VATDVAARGLDVEGLDLVINFDMPRSG-----DEYVHRIGRTGRAGAEGLAISLICHGDW 352

Query: 693 -ITKSIQLAIDETTRRREKQL 712
            +  S++  + +   RR  + 
Sbjct: 353 NLMSSVERYLKQNFERRNIKE 373


>gi|327540357|gb|EGF26943.1| cold-shock deAd box protein a [Rhodopirellula baltica WH47]
          Length = 862

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 90/254 (35%), Gaps = 13/254 (5%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
              + SAT   P     ++         I+   +    V  R+      D  D +    +
Sbjct: 411 QVALFSATLPKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVSPRDKIDALTRILE 470

Query: 581 QGLR--ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                 +++   TK     + E L ++      ++ ++    R   I  L+ G+ DVLV 
Sbjct: 471 VEETDGVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVA 530

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLD+P    V   D           S +  IGR  R   S   I++     +  
Sbjct: 531 TDVAARGLDVPRISHVFNFD-----LPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQ 585

Query: 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
              I+ TT++  + ++     +IN   V+    + I  +  +   T    + AQ    S 
Sbjct: 586 LRFIENTTKQPIEIIDIPTVADINEARVRR-FKQRITDVSADQDLTVYKDMIAQYAEESG 644

Query: 758 KKGKAHLKSLRKQM 771
           K  +    +L  +M
Sbjct: 645 KPMEMIAAAL-AEM 657


>gi|331696881|ref|YP_004333120.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951570|gb|AEA25267.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 659

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           ++    ++   T+   + +TE L  R +R   +H  +    R  ++  LR G+ D+LV  
Sbjct: 334 ERPTAAIVFCRTRADVDAVTEALTGRGLRAEALHGGMDQEHRTRVVDRLRNGRTDLLVAT 393

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQ 698
           ++   GLDI +   V   D  K     S  S +  IGR  R     V I      +    
Sbjct: 394 DVAARGLDIDQLTHVVNHDVPK-----SPESYVHRIGRVGRAGREGVAITLVAPASVRHL 448

Query: 699 LAIDE 703
             I+ 
Sbjct: 449 RNIER 453


>gi|258516257|ref|YP_003192479.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779962|gb|ACV63856.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 539

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++   TKR  ++L   L  R  +   +H ++   +R  ++R  + G+ + LV  ++   
Sbjct: 254 AIIFCRTKRGVDELVASLQVRGYQAAGLHGDLSQYQRNHVMRQFKAGQVEFLVATDVAAR 313

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           GLDI     V   D       +     +  IGR  R   +   I             I++
Sbjct: 314 GLDIENVSHVINFDV-----PQDPEFYVHRIGRTGRAGKTGMAISLVSPRDFRQLRLIEK 368

Query: 704 TTRRREK 710
            T+ R K
Sbjct: 369 ITKSRVK 375


>gi|223937377|ref|ZP_03629282.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
 gi|223893928|gb|EEF60384.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
          Length = 437

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 76/233 (32%), Gaps = 22/233 (9%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLV 555
            + + GF LPS       +  +    +  T++ SAT                     G  
Sbjct: 159 RMLDMGF-LPSIR-----QIVKALPRKRQTLLFSATLSREIEGLTHEFQHAPKTVQIGRR 212

Query: 556 DPPVE-----IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVR 610
             P E     +      ++       L       +L+    K  A+ +   L  + I+  
Sbjct: 213 SNPAETVTQLVYEVPKHLKPALLVHLLRDPSMDMVLVFSRMKHSADRIARNLENKGIKTA 272

Query: 611 YMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTS 670
            +HS     +R+  ++D + G   VLV  ++   G+D+     V   D     F      
Sbjct: 273 TLHSNRSQNQRLRALKDFKSGAVRVLVATDIAARGIDVDGISHVVNYD-----FPMHAED 327

Query: 671 LIQTIGRAARNVNSK-VILYA----DTITKSIQLAIDE-TTRRREKQLEHNKK 717
            +  IGR  R       I +         +S++  I     R++ +  ++N  
Sbjct: 328 YVHRIGRTGRAHAVGDAISFVTSEDHGTLRSLERFIGRGIVRKKAEGFDYNAA 380


>gi|308804011|ref|XP_003079318.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
 gi|116057773|emb|CAL53976.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
          Length = 683

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 71/192 (36%), Gaps = 17/192 (8%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE---------DVYDE 574
            T + SAT   W  +  +  +  Q +    + D   ++      +           +  +
Sbjct: 206 QTFLFSATMPQWVKQITKKFLKAQHVVVDLVGDNKQKVADTIDLMTCAVSQTSRTSIVMD 265

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +     +  + +    TKR A++LT  L +R +    +H ++   +R   ++  R  +F 
Sbjct: 266 LVTVYAKDKKCICFTQTKRAADELTAALGKR-VSCEVLHGDIAQAQRERTLQRFRDNRFT 324

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK--VILYADT 692
           VL+  ++   GLDI +  LV               S +   GR  R       + +Y D 
Sbjct: 325 VLIATDVAARGLDISDVDLVI-----HYELPNDVESFVHRCGRTGRAGQQGAAIAMYTDR 379

Query: 693 ITKSIQLAIDET 704
            +  I+    ET
Sbjct: 380 ESYMIRRIQKET 391


>gi|62088382|dbj|BAD92638.1| DDX19-like protein variant [Homo sapiens]
          Length = 313

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 103 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 156

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 157 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 216

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 217 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 275

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 276 MVDSKHSMNIL----NR---IQEHFNKK 296


>gi|26991217|ref|NP_746642.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|24986267|gb|AAN70106.1|AE016650_5 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
          Length = 440

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 98/283 (34%), Gaps = 27/283 (9%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGS--------WELEQCQGIIVEQ 547
            + + GF      D   L  E     R  T++ SAT G           L+  + +++  
Sbjct: 156 RMLDMGF----AEDMERLCKEC--ENREQTLLFSATTGGAALRDIIGKVLKDPEHLMLNS 209

Query: 548 IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
           + +        +         E +   +  A +   + ++   T+ MA+ +  +L  +++
Sbjct: 210 VSQLAEGTRQQIITADHDQHKEQIAQWLL-ANETFDKAIIFTNTRAMADRIYGHLVAKDV 268

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +   +H E    +R   I   + G   VLV  ++   GLDI    LV   D  + G    
Sbjct: 269 KAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDVAARGLDIDGLDLVINFDMPRSG---- 324

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITK-----SIQLAIDETTRRREKQLEHNKKHNINP 722
               +  +GR  R     + +   T        SI+  + +   RR  +      +   P
Sbjct: 325 -DEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIERYLKQQFERRVIKEVKGTYNG--P 381

Query: 723 QSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLK 765
           + VK             +  T +    A++   +K K  A L 
Sbjct: 382 KKVKASGKAAGSKKKKVEKKTGDKKAAAKRKPTAKPKANAPLA 424


>gi|83310484|ref|YP_420748.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82945325|dbj|BAE50189.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 583

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 59/188 (31%), Gaps = 11/188 (5%)

Query: 521 LRPTTIVVSATPGSWELEQCQGIIVE-QIIRPTGLVDPPVEIRSARTQVE--DVYDEINL 577
               T+  SAT G          ++  + ++ +        +  A   VE  D  + +  
Sbjct: 213 KIRQTLFFSATMGPEIRRLADAFLMNPKEVKVSTGASAATTVVQALAVVEEIDKRETLRH 272

Query: 578 --AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
               ++     +    KR  + L   L +    V  +H ++    R E +   + G+  +
Sbjct: 273 LIRIEEVKNAFIFCNRKRDVDVLFRSLKKHGFDVVQLHGDMAQSARGETLEKFKKGEARL 332

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTIT 694
           +V  ++   G+DI     V   D             +  IGR  R          A    
Sbjct: 333 MVCSDVAARGIDISAVSHVFNFDVPI-----HAEDYVHRIGRTGRAGMEGHAFTIASPDD 387

Query: 695 KSIQLAID 702
                AI+
Sbjct: 388 GRFVGAIE 395


>gi|28897279|ref|NP_796884.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260876244|ref|ZP_05888599.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034]
 gi|260896422|ref|ZP_05904918.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466]
 gi|260902727|ref|ZP_05911122.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037]
 gi|28805488|dbj|BAC58768.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088406|gb|EFO38101.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466]
 gi|308092964|gb|EFO42659.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034]
 gi|308107646|gb|EFO45186.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037]
 gi|328472043|gb|EGF42920.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 10329]
          Length = 407

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 30/246 (12%)

Query: 472 FVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSAT 531
           ++D        I  +   +  R     + GF  P+   +R      W   R  T++ SAT
Sbjct: 139 YIDAERFDCRAIEWLVLDEADRM---LDMGFA-PTV--DRLSNECRW---RKQTLLFSAT 189

Query: 532 PGSWELEQCQGIIVEQIIRPTGL-VDPPVEIRSARTQVEDVYDEINLA--------AQQG 582
               E +  +G   + +  P  +    P+  R    Q     D              +Q 
Sbjct: 190 ---LEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADSAEHKLALLKHIITEQA 246

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            R ++ + T+    +L   L    I   ++  E+    R   I   R G  +VL+  ++ 
Sbjct: 247 ERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFRDGTVNVLLATDVA 306

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAI 701
             G+D+P+   V   D  +     +    +  IGR AR       I   +   + +   +
Sbjct: 307 ARGIDLPDVSHVINYDMPR-----TADVYLHRIGRTARAGKKGNAISIVEAHDQPM---M 358

Query: 702 DETTRR 707
           D   R 
Sbjct: 359 DRVARY 364


>gi|329122297|ref|ZP_08250885.1| ATP-dependent RNA helicase SrmB [Haemophilus aegyptius ATCC 11116]
 gi|327473858|gb|EGF19275.1| ATP-dependent RNA helicase SrmB [Haemophilus aegyptius ATCC 11116]
          Length = 444

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 62/306 (20%), Positives = 103/306 (33%), Gaps = 55/306 (17%)

Query: 470 LLFVDESHVTIPQISGMYRG-----DFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524
           +L  DE+   +    G            RK TL      L S      L  +    L   
Sbjct: 153 MLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL------LFSATLEGELLVDFAERLLND 206

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            + V A P   E ++                       S   +++ +   I    ++  R
Sbjct: 207 PVKVDAEPSRRERKKINQWYYHAD--------------SNEHKIKLLARFIE--TEEVTR 250

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V  +  A +L+E L +R IR  Y+  E+   +R   I  L+ G   VLV  ++   
Sbjct: 251 GIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVATDVAAR 310

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDET 704
           G+DI +   V   D        S  + +  IGR AR       +          L     
Sbjct: 311 GIDIDDVSHVMNFD-----LPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLG---- 361

Query: 705 TRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHL 764
                      K      + +K +I+  ++P        T    D +  S+SKK+ KA +
Sbjct: 362 -----------KIKRYTEEILKARILASLEP-------RTKPPKDGEVKSVSKKQ-KARI 402

Query: 765 KSLRKQ 770
           K  R+ 
Sbjct: 403 KEKRED 408


>gi|330040429|ref|XP_003239908.1| DEAD box protein [Cryptomonas paramecium]
 gi|327206834|gb|AEA39010.1| DEAD box protein [Cryptomonas paramecium]
          Length = 396

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            ++ V T+  AE +   L   N +V Y H ++   +R +I+ D +L K  +LV  +L   
Sbjct: 244 AIIFVDTQICAEKIAVLLKVLNFKVAYFHGKLSQDKRAKILHDFKLKKIKILVSTDLASR 303

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDE 703
           G+DIP+  L+   D             I  IGR AR   +  VI        S    I+ 
Sbjct: 304 GIDIPDIELIINYDIPLY-----TRDYIHRIGRTARAGKTGRVINLVTQYDISSYQKIEI 358

Query: 704 TTRRREKQLEHNKK 717
             +R+ ++ + N K
Sbjct: 359 LLQRKLEEFKCNLK 372


>gi|323452072|gb|EGB07947.1| hypothetical protein AURANDRAFT_26912 [Aureococcus anophagefferens]
          Length = 421

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 70/191 (36%), Gaps = 26/191 (13%)

Query: 526 IVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL-- 583
           + V A  G+ E  +    I + +I          E RS   +   + + +    Q G   
Sbjct: 202 VNVGAERGADEGPEANKRIDQSVI--------VTEERSRDGR---LLEILKQRYQSGTSA 250

Query: 584 -----RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
                R+++  L K+    L  +L  +  +   +H ++    R +   D + G   +LV 
Sbjct: 251 SYATARLIVFGLYKKECARLETFLNSKKWKCVAIHGDMSQAARNQAFEDFKSGAVPLLVA 310

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK---VILYADTITK 695
            ++   GLDIP   LV         F  +    +  IGR  R   +     + + +   K
Sbjct: 311 TDVAARGLDIPNVELVVNFS-----FPLTIEDYVHRIGRTGRAGKTGTAITLFHGEGHEK 365

Query: 696 SIQLAIDETTR 706
           ++  A+    R
Sbjct: 366 ALAGALQNVLR 376


>gi|296231548|ref|XP_002761184.1| PREDICTED: ATP-dependent RNA helicase DDX19A isoform 1 [Callithrix
           jacchus]
          Length = 478

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 268 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 321

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 322 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 381

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 382 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 440

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 441 MVDSKHSMNIL----NR---IQEHFNKK 461


>gi|257482171|ref|ZP_05636212.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 442

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 11/159 (6%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D++  +    + G  +L+   T+   + L + L    +    +H +     R   +   +
Sbjct: 233 DLFIHLMKKHRWGQ-VLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFK 291

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVIL 688
             +  +LV  ++   GLDI +   V  LD             I  IGR  R     + I 
Sbjct: 292 SNEVKILVATDVAARGLDIDDLPTVVNLDLPIV-----AEDYIHRIGRTGRAGLTGEAIS 346

Query: 689 YADTITKSIQLAIDETTRR---REKQLEHNKKHNINPQS 724
                   +  AI+  TR+   R+++ +   +H   P +
Sbjct: 347 LVCADEVELLSAIEVLTRQTLERKEEQDFEPEHR-VPTT 384


>gi|294952496|ref|XP_002787325.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239902284|gb|EER19121.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 402

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
            + ++   +    E L + + E      Y+H+ +    R  +  D R G    LV  +L 
Sbjct: 309 NQAIIFCNSVTRVELLAKKITELGFSCFYIHARMYQSHRNRVFHDFRNGACRCLVSSDLF 368

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
             G+DI    +V   D     F ++  + +  IGR+ R 
Sbjct: 369 TRGIDIENVNVVINFD-----FPKNSETYLHRIGRSGRF 402


>gi|163750312|ref|ZP_02157553.1| ATP-dependent RNA helicase SrmB [Shewanella benthica KT99]
 gi|161329984|gb|EDQ00969.1| ATP-dependent RNA helicase SrmB [Shewanella benthica KT99]
          Length = 421

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 73/202 (36%), Gaps = 17/202 (8%)

Query: 522 RPTTIVVSAT-PGSWELEQCQGIIVEQI---IRPTGLVDPPVE--IRSARTQVEDVYDEI 575
           R  T++ SAT  GS        ++ + +             +   I  A  +        
Sbjct: 189 RKQTMLFSATLEGSDVGRFSHQLLTDPVKVEAEAPRSEKAKIHQWIHIADNKEHKFAMLC 248

Query: 576 NLAAQQG-LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           N+  Q+   R ++ V T+     L   L    I   +M  +++  +R + +     G+  
Sbjct: 249 NILRQEDVTRTIVFVKTREGVASLEGLLQREGITCSFMRGDMEQKQRFQALGRFTKGEVS 308

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL-----Y 689
           VL+  ++   G+D+     V   D  +     S  + +  IGR AR       +     +
Sbjct: 309 VLLATDVAARGIDVDNISHVINFDMPR-----SADTYVHRIGRTARAGAKGTAISLVEAH 363

Query: 690 ADTITKSIQLAIDETTRRREKQ 711
              +   I+  ID+  +RR  +
Sbjct: 364 DIRVVGKIERYIDQVLKRRFIK 385


>gi|87240993|gb|ABD32851.1| Helicase, C-terminal; Zinc finger, CCHC-type; GUCT [Medicago
           truncatula]
          Length = 753

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           +  ++     +G + ++   TKR A++++  L   +I    +H ++   +R   +   R 
Sbjct: 344 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-NSITSEALHGDISQHQRERTLNGFRQ 402

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GKF VLV  ++   GLDIP   L+               + +   GR  R       +
Sbjct: 403 GKFTVLVATDVASRGLDIPNVDLII-----HYELPNDPETFVHRSGRTGRAGKLGTAI 455


>gi|15611302|ref|NP_222953.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori J99]
 gi|4154758|gb|AAD05818.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori J99]
          Length = 491

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 34/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++        +  H  +P++  +   D      + + GF     +D+    F+
Sbjct: 144 TPGRLLDHLKN------ERIHKFVPKVVVLDESD-----EMLDMGF-----LDDIEEIFD 187

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVY 572
                    ++ SAT     +++    I+E  I+    P+ + +  +  R       +  
Sbjct: 188 YLPSEA-QILLFSAT-MPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERA 245

Query: 573 DEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + I      Q   + ++   TK+ A++L ++L  +N +   +H ++   +R   I   + 
Sbjct: 246 EAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              DVLV  ++   GLDI     V            +  S I  IGR  R     + +  
Sbjct: 306 NDADVLVATDVASRGLDISGVSHVF-----SYHLPLNTESYIHRIGRTGRAGKKGMAITL 360

Query: 691 DTITK-----SIQLAID 702
            T  +      +Q  ID
Sbjct: 361 VTPLEYKELLRMQKEID 377


>gi|256785835|ref|ZP_05524266.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
          Length = 473

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 53/156 (33%), Gaps = 17/156 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D +      A +  R+L+ + T+   + LT  L    +R   +H      +R   +   +
Sbjct: 272 DKHAATTEIAARDGRVLMFLGTRHAVDRLTRDLLNSGVRAAALHGGKSQSQRTRTLAQFK 331

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ +    LV  +D   +         +   GR AR   S  ++ 
Sbjct: 332 NGHVTVLVATNVAARGIHVDSLDLVVNVDPPSD-----HKDYLHRGGRTARAGESGSVVT 386

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSV 725
             T             +RR           I PQ+ 
Sbjct: 387 PVTP-----------NQRRAMTRLMTTA-GIVPQTT 410


>gi|262203393|ref|YP_003274601.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262086740|gb|ACY22708.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 543

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 14/173 (8%)

Query: 524 TTIVVSAT-PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE-------DVYDEI 575
            T++ SAT PG         +     IR     D  +  R+ +           ++   I
Sbjct: 219 QTMLFSATMPGPIVTLARTFLHRPTHIRAEHADDSAIHERTTQYVYRAHALDKAELVARI 278

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
             A  +G   ++   TKR A+ + + L ER  +V  +H ++  + R + ++  R G  DV
Sbjct: 279 LQAEGRG-ATMIFTRTKRTAQKVADDLAERGFKVGAVHGDLGQVAREKALKRFRDGTIDV 337

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           LV  ++   G+DI +   V               + +  IGR  R   + + +
Sbjct: 338 LVATDVAARGIDIDDVTHVINY-----QIPEDDKNYVHRIGRTGRAGRTGIAV 385


>gi|320322648|gb|EFW78741.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 442

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 11/159 (6%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D++  +    + G  +L+   T+   + L + L    +    +H +     R   +   +
Sbjct: 233 DLFIHLMKKHRWGQ-VLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFK 291

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVIL 688
             +  +LV  ++   GLDI +   V  LD             I  IGR  R     + I 
Sbjct: 292 SNEVKILVATDVAARGLDIDDLPTVVNLDLPIV-----AEDYIHRIGRTGRAGLTGEAIS 346

Query: 689 YADTITKSIQLAIDETTRR---REKQLEHNKKHNINPQS 724
                   +  AI+  TR+   R+++ +   +H   P +
Sbjct: 347 LVCADEVELLSAIEVLTRQTLERKEEQDFEPEHR-VPTT 384


>gi|298488858|ref|ZP_07006883.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298156611|gb|EFH97706.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 442

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 11/159 (6%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D++  +    + G  +L+   T+   + L + L    +    +H +     R   +   +
Sbjct: 233 DLFIHLMKKHRWGQ-VLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFK 291

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVIL 688
             +  +LV  ++   GLDI +   V  LD             I  IGR  R     + I 
Sbjct: 292 SNEVKILVATDVAARGLDIDDLPTVVNLDLPIV-----AEDYIHRIGRTGRAGLTGEAIS 346

Query: 689 YADTITKSIQLAIDETTRR---REKQLEHNKKHNINPQS 724
                   +  AI+  TR+   R+++ +   +H   P +
Sbjct: 347 LVCADEVELLSAIEVLTRQTLERKEEQDFEPEHR-VPTT 384


>gi|289623983|ref|ZP_06456937.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648770|ref|ZP_06480113.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868972|gb|EGH03681.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 442

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 11/159 (6%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D++  +    + G  +L+   T+   + L + L    +    +H +     R   +   +
Sbjct: 233 DLFIHLMKKHRWGQ-VLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFK 291

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVIL 688
             +  +LV  ++   GLDI +   V  LD             I  IGR  R     + I 
Sbjct: 292 SNEVKILVATDVAARGLDIDDLPTVVNLDLPIV-----AEDYIHRIGRTGRAGLTGEAIS 346

Query: 689 YADTITKSIQLAIDETTRR---REKQLEHNKKHNINPQS 724
                   +  AI+  TR+   R+++ +   +H   P +
Sbjct: 347 LVCADEVELLSAIEVLTRQTLERKEEQDFEPEHR-VPTT 384


>gi|288904866|ref|YP_003430088.1| ATP-dependent RNA helicase [Streptococcus gallolyticus UCN34]
 gi|288731592|emb|CBI13147.1| putative ATP-dependent RNA helicase [Streptococcus gallolyticus
           UCN34]
          Length = 526

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 11/196 (5%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT       +        E + +    L    V+    R + +D +D +     
Sbjct: 176 QTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLMD 235

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
             Q    ++   TKR  ++LT  L  R  R   +H ++   +R+ ++RD +    D+LV 
Sbjct: 236 VDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILVA 295

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R       I +        
Sbjct: 296 TDVAARGLDISGVTHVYNYD-----IPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGY 350

Query: 698 QLAIDETTRRREKQLE 713
              I++ T++R K L+
Sbjct: 351 LSIIEKLTKKRMKGLK 366


>gi|237798154|ref|ZP_04586615.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021006|gb|EGI01063.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 629

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 557 PPVEIRSARTQVEDVYDEINLAAQQGLR--------------ILLTVLTKRMAEDLTEYL 602
             +E+    T VE +   +   A    R              +L+   TK  A  L EYL
Sbjct: 210 ERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLIFTRTKHGANRLAEYL 269

Query: 603 YERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKE 662
            +  +    +H       R + + D + G   ++V  ++   GLDI +   V   +    
Sbjct: 270 DKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFE---- 325

Query: 663 GFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSIQLAIDETTRRR 708
                    +  IGR  R   S   I       + +  +I+  T+++
Sbjct: 326 -LPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371


>gi|218194025|gb|EEC76452.1| hypothetical protein OsI_14162 [Oryza sativa Indica Group]
          Length = 779

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 571 VYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           V  ++     +G + ++   TKR A++++  L   +I    +H ++   +R   +   R 
Sbjct: 361 VLSDLITVYAKGGKTIVFTKTKRDADEVSLALT-NSIASEALHGDISQHQRERTLNGFRQ 419

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           GKF VLV  ++   GLDIP   L+               + +   GR  R   +   +
Sbjct: 420 GKFTVLVATDVAARGLDIPNVDLII-----HYELPNDPETFVHRSGRTGRAGKAGTAI 472


>gi|209972934|ref|YP_002300381.1| gp19.5 [Bacillus phage SPO1]
 gi|209871254|gb|ACI91010.1| gp19.5 [Bacillus phage SPO1]
          Length = 530

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 77/194 (39%), Gaps = 18/194 (9%)

Query: 528 VSATPGSWEL---EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLR 584
            SA P  + L    +    +  Q  R  G+++        R QV    D++   A+ G +
Sbjct: 345 YSAKPTVYFLPVNTKSVDYVDYQTARDQGIINNQ-----ERNQV--FVDKVLERAKSGKQ 397

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
            L+ V      E +   L  + + V + H E+    R  ++  L  G  DVLV   +L E
Sbjct: 398 CLIIVNETTHGEIILSMLQNQGVTVDFTHGEMTKTHRQSVLDRLDEGSLDVLVATPILDE 457

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-ILYADTITKSIQLAIDE 703
           G+D+     + ++   K     S   ++Q IGR  R       +   D +    +  +D 
Sbjct: 458 GVDVSGINCLFLMAGGK-----SMRQILQRIGRGLRKKEDGSGLEVYDALDYHNEFLVDH 512

Query: 704 TTRRREKQLEHNKK 717
           T RR   Q   N++
Sbjct: 513 TARRY--QTYKNEE 524


>gi|70989821|ref|XP_749760.1| ATP-dependent RNA helicase [Aspergillus fumigatus Af293]
 gi|74668891|sp|Q4WH83|DBP3_ASPFU RecName: Full=ATP-dependent RNA helicase dbp3
 gi|66847391|gb|EAL87722.1| ATP-dependent RNA helicase, putative [Aspergillus fumigatus Af293]
 gi|159129169|gb|EDP54283.1| ATP-dependent RNA helicase, putative [Aspergillus fumigatus A1163]
          Length = 503

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 19/202 (9%)

Query: 524 TTIVVSAT--PGSWELEQCQGIIVEQII---------RPTGLVDPPVEI-RSART--QVE 569
            T++ +AT  P   +L          +          R    +   VE+ +      ++ 
Sbjct: 266 QTVMFTATWPPSVRDLAASFMTSAVTVTIGGDPSADPRANTRIKQVVEVVKPQEKEARLV 325

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
            +       A  G ++L+  L K+ A  +   L  +N +V  +H ++   ER + +   +
Sbjct: 326 QLLSRSQRGAAVGDKVLVFCLYKKEAVRVERLLRSKNFKVAGIHGDLNQHERFKSLEAFK 385

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  ++   GLDIP   LV  +      F  +    +  IGR  R       + 
Sbjct: 386 TGSATVLVATDVAARGLDIPSVKLVINV-----TFPLTVEDYVHRIGRTGRAGADGHAIT 440

Query: 690 ADTITKSIQLAIDETTRRREKQ 711
             T     Q        R  KQ
Sbjct: 441 LFTEADKAQSGALINVLRAAKQ 462


>gi|219115677|ref|XP_002178634.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410369|gb|EEC50299.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 417

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 10/166 (6%)

Query: 533 GSWELEQCQGIIVEQIIRPTGLVDPPVEI---RSARTQVEDVYDEINLAAQQGLRILLTV 589
           G   +    G  V+  +     V   VE+   R+   ++ D+  ++++  ++  R+L+  
Sbjct: 198 GFESIVGSNGGGVDDSLSANKRVTQIVEVVEDRARDARLRDILRKVHM--KRDNRVLVFG 255

Query: 590 LTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIP 649
           L K+ AE L   L +       +H     + R   +   + G   +L+  ++   GLDIP
Sbjct: 256 LYKKEAERLEYSLRKDGWDCCSIHGNKTQVARTAALAQFKDGSCPLLIATDVAARGLDIP 315

Query: 650 ECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
               V         F  +    +  IGR  R   + V         
Sbjct: 316 NVEAVINF-----TFPLTIEDYVHRIGRTGRAGKTGVSYTFFQPGD 356


>gi|28900700|ref|NP_800355.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28809080|dbj|BAC62188.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
           parahaemolyticus RIMD 2210633]
          Length = 421

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 101/314 (32%), Gaps = 48/314 (15%)

Query: 457 PPPTLFEYI-------PEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMD 509
            P  L +++        +  +L +DE+   +            R         RLP   D
Sbjct: 134 TPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILR---------RLP--ND 182

Query: 510 NRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVE 569
            + + F      R  TI         E+E        + ++          +     + +
Sbjct: 183 KQIMLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQM--------VYPVDKKRK 234

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                  + ++   ++L+   TK+ +++L + L    I+   ++ +     R   + + +
Sbjct: 235 RELLAYLIGSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFK 294

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
            GK   L+  ++   GLDI E   V   D   +         +  IGR  R   S   + 
Sbjct: 295 QGKVRALIATDVAARGLDIQELEQVVNFDMPFK-----AEDYVHRIGRTGRAGKSGLAVS 349

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
                 + +  AI+    +R  Q                  +E  +P L+E+        
Sbjct: 350 LMSRDEEYLLRAIETLLDQRLPQEW----------------LEGFEPSLIEEVEPERDGG 393

Query: 749 DAQQLSLSKKKGKA 762
             ++   S+K+   
Sbjct: 394 GRRKSRSSEKRKLK 407


>gi|332084705|gb|EGI89893.1| ATP-dependent RNA helicase rhlB [Shigella boydii 5216-82]
          Length = 421

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/339 (17%), Positives = 101/339 (29%), Gaps = 61/339 (17%)

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG+ +  + +   Y  SH       +N     I                      L  +I
Sbjct: 57  TGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMA----------------PTHELAVQI 100

Query: 427 TYDLEMLET-----TGSCQSIENYSRYLTGRNPGE-----PPPTLFEYIPEDSLLFVDES 476
             D E L        G     + Y + L     G          L +Y          ++
Sbjct: 101 HADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDY--------TKQN 152

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLRPTTIV 527
           H+ +  I  +   +  R   L   GF         R+P       + F      R   + 
Sbjct: 153 HINLGAIQVVVLDEADRMYDL---GFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELA 209

Query: 528 VSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                 +  +E   +     +I           ++R  +T +E+         +   R +
Sbjct: 210 FEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEE---------EWPDRAI 260

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +   TK   E++  +L     RV  +  +V   +R+ I+ +   G  D+LV  ++   GL
Sbjct: 261 IFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGL 320

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
            IP    V   D             +  IGR  R   S 
Sbjct: 321 HIPAVTHVFNYD-----LPDDCEDYVHRIGRTGRAGASG 354


>gi|302791703|ref|XP_002977618.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
 gi|300154988|gb|EFJ21622.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
          Length = 663

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 92/265 (34%), Gaps = 42/265 (15%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV--EIRSARTQVEDVYDEINLAAQQ 581
            T++ SAT  SW  E     I  + ++P       V  E   A   V+ +  +   +A+ 
Sbjct: 264 QTLLFSATMPSWVKE-----IATRFLKPNKKTVDLVGDEKMKASNNVKHLLLQCAYSARS 318

Query: 582 ------------GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
                       G R+++   TK  A +L   L       R +H ++   +R   +   R
Sbjct: 319 QMIADVIKVYGSGGRVIVFTETKNDASELAGSLGTN--VARPLHGDIPQAQREHTLAGFR 376

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV-IL 688
             KF VLV  ++   GLDI +  L+      +    +   + I   GR  R  N+ + ++
Sbjct: 377 SAKFLVLVATDVAARGLDINDVQLII----QQCEPPKDVETYIHRSGRTGRAGNTGIAVM 432

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEK-----------IMEVIDPIL 737
             D   + +   I+      +   +  K     P ++ ++           + + + P  
Sbjct: 433 MFDRKKEYMIPMIEA-----KAGFKFEKITPPQPSTIAKESSFTAIKAVSAVSDSVVPFF 487

Query: 738 LEDAATTNISIDAQQLSLSKKKGKA 762
            E A           + L  K    
Sbjct: 488 KEAAEQLVSDCKRPAVELLAKALAK 512


>gi|251787806|ref|YP_003002527.1| ATP-dependent RNA helicase RhlB [Dickeya zeae Ech1591]
 gi|247536427|gb|ACT05048.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 428

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 60/340 (17%), Positives = 102/340 (30%), Gaps = 61/340 (17%)

Query: 367 TGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRI 426
           TG+ +  + +   Y  +H  +     N     I                    + L  +I
Sbjct: 57  TGKTLAFLASTFHYLLTHPASSERQTNQPRALIMA----------------PTRELAVQI 100

Query: 427 TYDLEMLE-----TTGSCQSIENYSRYLTGRNPGE-----PPPTLFEYIPEDSLLFVDES 476
             D E L        G     + Y + L     G          L +Y          ++
Sbjct: 101 HTDAEALAKATGLRLGLAYGGDGYDKQLKVLEDGVDILIGTTGRLIDY--------TKQN 152

Query: 477 HVTIPQISGMYRGDFHRKATLAEYGF---------RLPSCMDNRPLRFEEWNCLRPTTIV 527
           HV +  I  +   +  R   L   GF         R+P       + F      R   + 
Sbjct: 153 HVNMGAIQVVVLDEADRMYDL---GFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELA 209

Query: 528 VSATPGSWELEQC-QGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL 586
                 +  +E   +     +I           ++R  +T +E+         +   R +
Sbjct: 210 FEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEE---------EWPDRCI 260

Query: 587 LTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGL 646
           +   TK   ED+  +L     RV  +  +V   +R+ I+ D   G  D+LV  ++   GL
Sbjct: 261 IFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTQGNLDILVATDVAARGL 320

Query: 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKV 686
            IP    V   D             +  IGR  R   S  
Sbjct: 321 HIPSVTHVFNYD-----LPDDCEDYVHRIGRTGRAGASGC 355


>gi|154253690|ref|YP_001414514.1| DEAD/DEAH box helicase domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154157640|gb|ABS64857.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 504

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 62/194 (31%), Gaps = 28/194 (14%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
            T+  SAT    E+++     +    R        +E+  A +   ++   +    + G 
Sbjct: 179 QTLFFSAT-MPPEIQRLTDTFLHNPER--------IEVARASSTSANIKQVLLKTTRDGK 229

Query: 584 R--------------ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           R               ++    KR    L   L +  +    +H ++    R   +   R
Sbjct: 230 RDVLQRMIEEDNVKNAIIFCNRKRDVSVLERALSKSGLSAGAIHGDLDQSTRTRTLDGFR 289

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   +LV  ++   GLDIP+   V   D             +  IGR  R   S   + 
Sbjct: 290 NGTIRLLVASDVAARGLDIPDVSHVFNYDV-----PSHAEDYVHRIGRTGRAGKSGTAVT 344

Query: 690 ADTITKSIQLAIDE 703
             T      LA  E
Sbjct: 345 LSTREDGKYLAAIE 358


>gi|310644435|ref|YP_003949194.1| dead/deah box helicase domain protein [Paenibacillus polymyxa SC2]
 gi|309249386|gb|ADO58953.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
          Length = 525

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 67/183 (36%), Gaps = 15/183 (8%)

Query: 521 LRPTTIVVSAT--PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVED------VY 572
            R  T++ SAT   G  +L +        +   +    P  +IR    Q  D      + 
Sbjct: 175 YRRQTMLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQIRQVVVQTTDRGKQQALV 234

Query: 573 DEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGK 632
           D +N    +    ++   TKR A  L E L E       +H ++   +R ++++  R  K
Sbjct: 235 DMLN--TDRPYLAVIFCRTKRRASKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAK 292

Query: 633 FDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADT 692
             +LV  ++   GLD+     V   D       +   S I  IGR  R     V +   T
Sbjct: 293 LQLLVATDVAARGLDVEGVTHVFNYD-----MPQDAESYIHRIGRTGRAGGKGVAVTLAT 347

Query: 693 ITK 695
              
Sbjct: 348 PRD 350


>gi|296231550|ref|XP_002761185.1| PREDICTED: ATP-dependent RNA helicase DDX19A isoform 2 [Callithrix
           jacchus]
          Length = 447

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 237 QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 290

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 291 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 350

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 351 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 409

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 410 MVDSKHSMNIL----NR---IQEHFNKK 430


>gi|268554368|ref|XP_002635171.1| Hypothetical protein CBG11408 [Caenorhabditis briggsae]
          Length = 565

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 64/168 (38%), Gaps = 20/168 (11%)

Query: 537 LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAE 596
           LE      + Q++         +E  + + ++ ++ + I    +   + ++ V TKR A+
Sbjct: 340 LELAANHNITQVV-------DVLEEHAKQAKLMELLNHIMNQKEC--KTIIFVETKRKAD 390

Query: 597 DLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDI------PE 650
           +LT  +         +H +    ER  ++++ + GK  +L+  ++   GL+        +
Sbjct: 391 ELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKMPILLATDVAARGLEFWVQVHVDD 450

Query: 651 CGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQ 698
              V   D     +  +    +  IGR  R           T T + +
Sbjct: 451 IKFVINYD-----YPNNSEDYVHRIGRTGRRDKKGTAYTFFTHTNASK 493


>gi|320330567|gb|EFW86546.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330873565|gb|EGH07714.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 442

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 11/159 (6%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D++  +    + G  +L+   T+   + L + L    +    +H +     R   +   +
Sbjct: 233 DLFIHLMKKHRWGQ-VLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFK 291

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVIL 688
             +  +LV  ++   GLDI +   V  LD             I  IGR  R     + I 
Sbjct: 292 SNEVKILVATDVAARGLDIDDLPTVVNLDLPIV-----AEDYIHRIGRTGRAGLTGEAIS 346

Query: 689 YADTITKSIQLAIDETTRR---REKQLEHNKKHNINPQS 724
                   +  AI+  TR+   R+++ +   +H   P +
Sbjct: 347 LVCADEVELLSAIEVLTRQTLERKEEQDFEPEHR-VPTT 384


>gi|310767076|gb|ADP12026.1| ATP-dependent RNA helicase RhlE [Erwinia sp. Ejp617]
          Length = 469

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 64/191 (33%), Gaps = 9/191 (4%)

Query: 522 RPTTIVVSATPGSWE--LEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEIN 576
           +   ++ SAT       L +      EQ+    R T        +     + +     + 
Sbjct: 180 KRQNLLFSATFSDEIKILAEKLLHNPEQVEVARRNTASEQVTQHVHLVDKKRKRELLSLL 239

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +      ++L+   TK  A  L E L +  I    +H       R   + D + GK  VL
Sbjct: 240 IGRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKDGKIRVL 299

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DI E   V   +             I   GRAA    +  ++  D     
Sbjct: 300 VATDIAARGIDIEELPHVVNYELP--NVPEDYVHRIGRTGRAAAVGEALSLVCVD--EHK 355

Query: 697 IQLAIDETTRR 707
           +   I+   +R
Sbjct: 356 LLRDIERVLKR 366


>gi|262274927|ref|ZP_06052738.1| ATP-dependent RNA helicase SrmB [Grimontia hollisae CIP 101886]
 gi|262221490|gb|EEY72804.1| ATP-dependent RNA helicase SrmB [Grimontia hollisae CIP 101886]
          Length = 413

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 73/197 (37%), Gaps = 32/197 (16%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEI--------RSARTQVEDVYD 573
           R  +++ SAT         +G  +E   +   L+  PVE+        R   TQ     D
Sbjct: 179 RKQSMLFSATL--------EGRGIEGFKKT--LLTDPVEVEAEPPRRERKKITQWYYRCD 228

Query: 574 EINLA--------AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEII 625
           ++            +Q  R ++ V T+     L EYL    I+  ++  E+   +R   I
Sbjct: 229 DMTHKNALLKSILTEQAKRAIIFVKTRERLAALREYLTAEKIKCAWLQGEMPQAKRTYAI 288

Query: 626 RDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK 685
                G+ +VL+  ++   G+D+P+   V   D       R     +  IGR AR     
Sbjct: 289 ERFTRGEINVLLATDVAARGIDVPDIDHVINFD-----LPRKADVYLHRIGRTARAGKKG 343

Query: 686 -VILYADTITKSIQLAI 701
             I   +   + +   I
Sbjct: 344 NAISLVEAHDQPMMDRI 360


>gi|90022842|ref|YP_528669.1| dystroglycan-type cadherin-like protein [Saccharophagus degradans
           2-40]
 gi|89952442|gb|ABD82457.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 516

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 73/213 (34%), Gaps = 15/213 (7%)

Query: 521 LRPTTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVE--IRSARTQVEDVYDEI 575
            +   ++ SAT      E  + I+   VE  + P       V+  I     + +      
Sbjct: 198 KKRQNLMFSATFSQDIRELAKSIVNNPVEITVNPPNSTATRVKQWICPVDKKEKPALLTH 257

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
            +   +  ++L+   TK  A  L + L    +R   +H       R + + + + G   +
Sbjct: 258 LIKTNKWQQVLVFSRTKHGANKLVKQLEGSGLRAAAIHGNKSQGARTKALAEFKNGTVKI 317

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTIT 694
           LV  ++   GLDI +   V   D       +     +  IGR  R       +       
Sbjct: 318 LVATDIAARGLDIDQLPQVVNFD-----LPQVAEDYVHRIGRTGRAGAEGNAVSLVSADE 372

Query: 695 KSIQLAIDETTR---RREKQLEHNKKHNINPQS 724
             +   I+  T+    RE        HN+ P+S
Sbjct: 373 FQMLKEIERLTKTLLTREVIQGFEPDHNL-PES 404


>gi|56696327|ref|YP_166684.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
 gi|56678064|gb|AAV94730.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
          Length = 471

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 94/316 (29%), Gaps = 57/316 (18%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L ++     LL       T  QI  +   D      + + GF  P       L   
Sbjct: 130 TPGRLLDHFERGKLLL------TGVQIMVVDEADR-----MLDMGFI-PDIERIFSLTP- 176

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRP----TGLVDPPVEI----------- 561
                   T+  SAT    E+E+     +    R            +E            
Sbjct: 177 ----FTRQTLFFSATMAP-EIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRD 231

Query: 562 RSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLER 621
           R A  +   +   I+   ++    ++    K   + + + L +       +H ++   +R
Sbjct: 232 REASEKRAVLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQR 291

Query: 622 IEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN 681
              +   R GK  +LV  ++   GLD+P    V   D    G        I   GRA R 
Sbjct: 292 TRTLDGFREGKLRLLVASDVAARGLDVPSVSHVFNFDVP--GHPEDYVHRIGRTGRAGR- 348

Query: 682 VNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDA 741
            + K I       +    AI+                    + +++ I  + +P   E+ 
Sbjct: 349 -DGKAITLCIPRDEKALDAIE--------------------KLIQKDIPRLENPARTEEK 387

Query: 742 ATTNISIDAQQLSLSK 757
                  + +     K
Sbjct: 388 PEAKPRREEKPARADK 403


>gi|134300131|ref|YP_001113627.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134052831|gb|ABO50802.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 482

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 11/191 (5%)

Query: 524 TTIVVSATPGS--WELEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
            T++ SAT      EL +      E I I+   +  P ++      Q +  ++ ++    
Sbjct: 177 QTLLFSATISKPIQELARRFLKNPEFIAIKAKEVTVPSIDQSYVEVQEKQKFEVLSTFLD 236

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            Q     ++   TKR  ++L E L +R      +H ++   +R  ++R  + G  +VLV 
Sbjct: 237 IQSPDLAIVFGRTKRRVDELYEALSKRGYSAEGIHGDLTQSKRESVLRQFKEGIIEVLVA 296

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITKSI 697
            ++   GLDI     V   D       +   S +  IGR  R       I +      + 
Sbjct: 297 TDVAARGLDISGVTHVYNFD-----IPQDPESYVHRIGRTGRAGKKGEAITFVTPREMNH 351

Query: 698 QLAIDETTRRR 708
              I+  T+ +
Sbjct: 352 LRLIERITKHK 362


>gi|308061601|gb|ADO03489.1| ATP-dependent RNA helicase [Helicobacter pylori Cuz20]
          Length = 492

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 34/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++        +  H  +P++  +   D      + + GF     +D+    F+
Sbjct: 144 TPGRLLDHLKN------ERIHKFVPKVVVLDESD-----EMLDMGF-----LDDIEEIFD 187

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVY 572
                    ++ SAT     +++    I+E  I+    P+ + +  +  R       +  
Sbjct: 188 YLPSEA-QILLFSAT-MPEPIKRLADRILENPIKIHIAPSNITNTDITQRFYVINEHERA 245

Query: 573 DEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + I      Q   + ++   TK+ A++L ++L  +N +   +H ++   +R   I   + 
Sbjct: 246 EAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              DVLV  ++   GLDI     V            +  S I  IGR  R     + +  
Sbjct: 306 NDADVLVATDVASRGLDISGVSHVFNYH-----LPLNTESYIHRIGRTGRAGKKGMAITL 360

Query: 691 DTITK-----SIQLAID 702
            T  +      +Q  ID
Sbjct: 361 VTPLEYKELLRMQKEID 377


>gi|227510196|ref|ZP_03940245.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190401|gb|EEI70468.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 453

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 59/303 (19%), Positives = 113/303 (37%), Gaps = 41/303 (13%)

Query: 496 TLAEYGFRLPSCMDNRPLRFEE------WNCLRPTTIVVSATPGSWELEQCQGIIVEQII 549
              + GF     +D+    F +      ++   P  I V        L++     V + I
Sbjct: 158 MTLDMGFL--DVVDHIAASFGKHVQMMVFSATIPQKITVF-------LKKYMDNPVIEEI 208

Query: 550 RPTGLVDPPVE--IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNI 607
             + ++ P ++  + S + Q ++      L   +   +L+   T++  E+LTEYL  + +
Sbjct: 209 PVSSIISPTIDNWLISTKGQDKNQLIYHLLTVGEPYLVLIFANTRKRVEELTEYLRGQGL 268

Query: 608 RVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRS 667
           +V  +H  VK  ER +I++ ++   F  +V  +L   G+DI     V   D   E     
Sbjct: 269 KVAMVHGGVKPRERKQIMKRIKNLDFQFVVATDLAARGIDIEGVSQVINDDIPTE----D 324

Query: 668 KTSLIQTIGRAARNVNSKVILYADTITKSI------------------QLAIDETTRRRE 709
               I  +GR  RN  S   +   +  +                       I +T  RR 
Sbjct: 325 LEFFIHRVGRTGRNGMSGTSITLYSPDEEKEVEELEGMGIHFKPKALKNHEIVDTYDRRR 384

Query: 710 KQLEHNKKHNINPQSV--KEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSL 767
           +Q    K+  ++P  +   +K  + I P        +    +     +SK++     +  
Sbjct: 385 RQTHRKKREKLDPTMIGLIKKKKKKIKPGYKRQIKMSISRKEEMDRRVSKREESRAKRKQ 444

Query: 768 RKQ 770
           RKQ
Sbjct: 445 RKQ 447


>gi|259909026|ref|YP_002649382.1| ATP-dependent RNA helicase RhlE [Erwinia pyrifoliae Ep1/96]
 gi|224964648|emb|CAX56162.1| Putative ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283479042|emb|CAY74958.1| putative ATP-dependent RNA helicase rhlE [Erwinia pyrifoliae DSM
           12163]
          Length = 471

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 64/191 (33%), Gaps = 9/191 (4%)

Query: 522 RPTTIVVSATPGSW--ELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEIN 576
           +   ++ SAT       L +      EQ+    R T        +     + +     + 
Sbjct: 180 KRQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVDKKRKRELLSLL 239

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
           +      ++L+   TK  A  L E L +  I    +H       R   + D + GK  VL
Sbjct: 240 IGRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKDGKIRVL 299

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DI E   V   +             I   GRAA    +  ++  D     
Sbjct: 300 VATDIAARGIDIEELPHVVNYELP--NVPEDYVHRIGRTGRAAAVGEALSLVCVD--EHK 355

Query: 697 IQLAIDETTRR 707
           +   I+   +R
Sbjct: 356 LLRDIERVLKR 366


>gi|260783339|ref|XP_002586733.1| hypothetical protein BRAFLDRAFT_248039 [Branchiostoma floridae]
 gi|229271857|gb|EEN42744.1| hypothetical protein BRAFLDRAFT_248039 [Branchiostoma floridae]
          Length = 433

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 5/124 (4%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKT 618
           VEI     + + V         +  + ++ V  K  A+DL+       I    +H +   
Sbjct: 315 VEIIDDEEKKDRVRQFCMEEMDEEDKAMIFVGRKVTADDLSSDFSLDGINCECIHGDRSQ 374

Query: 619 LERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRA 678
            +R   +  L+ G   +L+  ++   G+DI +   V   D     F R     +  +GR 
Sbjct: 375 CDRESALEALKDGVVRILIATDVASRGIDIKDVTWVVNYD-----FPRDMEEYVHRVGRT 429

Query: 679 ARNV 682
            R  
Sbjct: 430 GRAG 433


>gi|208434194|ref|YP_002265860.1| ATP-dependent RNA helicase [Helicobacter pylori G27]
 gi|208432123|gb|ACI26994.1| ATP-dependent RNA helicase [Helicobacter pylori G27]
          Length = 492

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 34/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++        +  H  +P++  +   D      + + GF     +D+    F+
Sbjct: 144 TPGRLLDHLKN------ERIHKFVPKVVVLDESD-----EMLDMGF-----LDDIEEIFD 187

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVY 572
                    ++ SAT     +++    I+E  I+    P+ + +  +  R       +  
Sbjct: 188 YLPSEA-QILLFSAT-MPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERA 245

Query: 573 DEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + I      Q   + ++   TK+ A++L ++L  +N +   +H ++   +R   I   + 
Sbjct: 246 EAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              DVLV  ++   GLDI     V            +  S I  IGR  R     + +  
Sbjct: 306 NDADVLVATDVASRGLDISGVSHVFNYH-----LPLNTESYIHRIGRTGRAGKKGMAITL 360

Query: 691 DTITK-----SIQLAID 702
            T  +      +Q  ID
Sbjct: 361 VTPLEYKELLRMQKEID 377


>gi|297191502|ref|ZP_06908900.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722058|gb|EDY65966.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 502

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 5/131 (3%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           D +      A +  R+++ + TK   + LT+ L    +R   +H      +R   +   +
Sbjct: 300 DKHATTTEIAARDGRVIMFLDTKHAVDRLTKDLLNSGVRAAGLHGGKSQPQRNRTLTQFK 359

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
            G   VLV  N+   G+ +    LV  +D             +   GR AR   S  ++ 
Sbjct: 360 SGHVTVLVATNVAARGIHVDNLDLVVNVDP-----PTDPKDYLHRGGRTARAGESGSVVT 414

Query: 690 ADTITKSIQLA 700
             T  +   +A
Sbjct: 415 LVTPNQRRDMA 425


>gi|224533484|ref|ZP_03674074.1| transcription-repair coupling factor [Borrelia burgdorferi
           CA-11.2a]
 gi|224513364|gb|EEF83725.1| transcription-repair coupling factor [Borrelia burgdorferi
           CA-11.2a]
          Length = 1125

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 95/253 (37%), Gaps = 22/253 (8%)

Query: 173 LLGVTGSGKTFTMAKV--IEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYD 230
           L G  G  K F + K+       +  +++     L      + KN       + F   Y 
Sbjct: 32  LTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTL-----DKIKNDLQVITNQIFELNY- 85

Query: 231 YYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESY 290
            + P  Y         K +  NE+I  +         +     +    S +  I    + 
Sbjct: 86  -FSPLVYKG----IGSKSTIFNERIKFL----FNFYKKNPGIYITVLKSLLSKIPDKNTL 136

Query: 291 SQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRV 350
            + I +++   ++   ++  +L+   Y++     I G F V G+ I+I+P   E    R+
Sbjct: 137 LKNIYKIEKNTNINTADIEKTLITLGYEKTLRVTIPGEFTVKGEIIDIYP-FGEQNPIRI 195

Query: 351 SMFGNDIEEISEFYPLTGQKIR-NVETIKIYANSHYVTPRPTLNTAMKYIKE-ELKMRLI 408
           ++  + IEEI  F PLT  K    +   +I      +    T+NT    IK  E K  L 
Sbjct: 196 ALNFDKIEEIKNFNPLTQLKHDNEILEFQILPKKEIIWDDKTINTLKTKIKSVEYKKILE 255

Query: 409 E--LEKEGRLLEA 419
           E   +KE +  E 
Sbjct: 256 ELDFKKETKTEEM 268



 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 22/190 (11%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQ---IIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
            + +SATP    L      + +     I P   V     + S    +  +   I     +
Sbjct: 733 CLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESFSELL--IKHAIESELSR 790

Query: 582 GLRILL-------TVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
             ++ L           K + E LT Y      R+  +H ++   E   I+ +     + 
Sbjct: 791 DGQVFLVNHNIEELYYLKTLIERLTPY-----ARIAIIHGKLTGEEIENIMHNFIKKAYQ 845

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +L+   ++  G+DIP    + I +A+K G  +    L Q  GR  R        +    +
Sbjct: 846 ILLATTIIENGIDIPNANTIIINNANKFGLAQ----LYQLKGRVGRGSQKAYAYFLYQDS 901

Query: 695 KSI-QLAIDE 703
           + + + +I+ 
Sbjct: 902 EKLNERSIER 911


>gi|188527054|ref|YP_001909741.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470]
 gi|188143294|gb|ACD47711.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470]
 gi|308063109|gb|ADO04996.1| ATP-dependent RNA helicase [Helicobacter pylori Sat464]
          Length = 492

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 34/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++        +  H  +P++  +   D      + + GF     +D+    F+
Sbjct: 144 TPGRLLDHLKN------ERIHKFVPKVVVLDESD-----EMLDMGF-----LDDIEEIFD 187

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVY 572
                    ++ SAT     +++    I+E  I+    P+ + +  +  R       +  
Sbjct: 188 YLPSEA-QILLFSAT-MPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERA 245

Query: 573 DEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + I      Q   + ++   TK+ A++L ++L  +N +   +H ++   +R   I   + 
Sbjct: 246 EAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              DVLV  ++   GLDI     V            +  S I  IGR  R     + +  
Sbjct: 306 NDADVLVATDVASRGLDISGVSHVFNYH-----LPLNTESYIHRIGRTGRAGKKGMAITL 360

Query: 691 DTITK-----SIQLAID 702
            T  +      +Q  ID
Sbjct: 361 VTPLEYKELLRMQKEID 377


>gi|330817466|ref|YP_004361171.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
 gi|327369859|gb|AEA61215.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
          Length = 524

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 67/190 (35%), Gaps = 15/190 (7%)

Query: 524 TTIVVSATPGSWE-------LEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEIN 576
            T++ SAT            L+  + I + Q +     +   V     R   + + D + 
Sbjct: 240 QTMLFSATLDGKIGSLTSRLLKDPERIEIVQKMEARTNIAQTVHYVDDRDHKDRLLDHLL 299

Query: 577 LAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
                  + ++   TK  A+ L   L +       +H ++    R   IR LR  +  VL
Sbjct: 300 -RDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARNRTIRALRERRVRVL 358

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V  ++   G+DIP    V   D  K          +  IGR  R   S + +    +  +
Sbjct: 359 VATDVAARGIDIPGITHVFNYDLPKF-----AEDYVHRIGRTGRAGRSGIAVSL--VHHA 411

Query: 697 IQLAIDETTR 706
            Q A+    R
Sbjct: 412 EQGALKRIER 421


>gi|323453142|gb|EGB09014.1| hypothetical protein AURANDRAFT_24989 [Aureococcus anophagefferens]
          Length = 495

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 9/121 (7%)

Query: 565 RTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEI 624
             Q+  + D +        R++    TKR  + L + L+        +H      ER E 
Sbjct: 336 DEQLAKLIDGM----ADSDRMICFTNTKRRVDYLAKSLWADGFGASAIHGGRSQAEREEA 391

Query: 625 IRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
           +R  +  ++ ++   ++   GLD+P+  +V   D  ++         +  IGR  R   S
Sbjct: 392 LRKFKTNEWPLMFATDVAARGLDLPDVSVVVNFDMPRDV-----EQYVHRIGRTGRAGKS 446

Query: 685 K 685
            
Sbjct: 447 G 447


>gi|308184052|ref|YP_003928185.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180]
 gi|308059972|gb|ADO01868.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180]
          Length = 492

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 34/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++        +  H  +P++  +   D      + + GF     +D+    F+
Sbjct: 144 TPGRLLDHLKN------ERIHKFVPKVVVLDESD-----EMLDMGF-----LDDIEEIFD 187

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVY 572
                    ++ SAT     +++    I+E  I+    P+ + +  +  R       +  
Sbjct: 188 YLPSEA-QILLFSAT-MPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERA 245

Query: 573 DEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + I      Q   + ++   TK+ A++L ++L  +N +   +H ++   +R   I   + 
Sbjct: 246 EAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              DVLV  ++   GLDI     V            +  S I  IGR  R     + +  
Sbjct: 306 NDADVLVATDVASRGLDISGVSHVFNYH-----LPLNTESYIHRIGRTGRAGKKGMAITL 360

Query: 691 DTITK-----SIQLAID 702
            T  +      +Q  ID
Sbjct: 361 VTPLEYKELLRMQKEID 377


>gi|294909743|ref|XP_002777840.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239885802|gb|EER09635.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 625

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 10/143 (6%)

Query: 559 VEIRSARTQVEDVYDEINLAAQQG-----LRILLTVLTKRMAEDLTEYLYERNIRVRYMH 613
           VE+     + E +   +   A         + L+   TKR A+D+T  L         +H
Sbjct: 400 VEVVEENGKAERLQALMRAVASASGGVWESKALIFTDTKRCADDITRVLRRDGWPALAIH 459

Query: 614 SEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQ 673
            + K  ER  ++ + + G+  +++  ++   GLD+ +   V   D     F  +    + 
Sbjct: 460 GDKKQTERDWVLAEFKTGRMPIMIATDVASRGLDVKDVKYVINYD-----FPGTIEDYVH 514

Query: 674 TIGRAARNVNSKVILYADTITKS 696
            IGR  R           T  K+
Sbjct: 515 RIGRTGRAGAHGTAYSFFTADKA 537


>gi|29830666|ref|NP_825300.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29607778|dbj|BAC71835.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 747

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 83/237 (35%), Gaps = 23/237 (9%)

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           +D        A +  R ++ V T+  A+ + E L +  ++   +H  +    R   + D 
Sbjct: 278 KDKAPVTAAIASRKGRTIIFVRTQLGADRIAEQLRDAGVKADALHGGMTQGARTRTLADF 337

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           + G  + LV  ++   G+ +    LV  +D             +   GR AR   S  ++
Sbjct: 338 KDGYVNALVATDVAARGIHVDGIDLVLNVDP-----AGDHKDYLHRSGRTARAGRSGTVV 392

Query: 689 YADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLE-DAATTNIS 747
                 +           RR+      +   ++            +P + E   A +   
Sbjct: 393 SLSLPHQ-----------RRQIFRLM-EDAGVDAARHIINSGTAFEPEVAEITGARSMTE 440

Query: 748 IDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKSSPYFQGLDD 804
           + AQ    + ++ +  +  L K++  A        AA +R E  RL +    +  +D
Sbjct: 441 VQAQSAGDAAQQAEREVTQLTKELERAQR-----RAAELRGEADRLVARAARERGED 492


>gi|89074254|ref|ZP_01160744.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium sp. SKA34]
 gi|89049958|gb|EAR55492.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium sp. SKA34]
          Length = 427

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 65/195 (33%), Gaps = 11/195 (5%)

Query: 524 TTIVVSATPGSWELEQCQGI-----IVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA 578
            T+  SAT      +    I     +VE     T        +       +       + 
Sbjct: 193 QTLFFSATFSKQVKKLAFDILTNPKMVEVTPANTAAETVEQIVYPVDKHRKAELLAYLIG 252

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
           ++   ++L+   TK+ ++ L + L    I+   ++ +     R   + D + GK  VLV 
Sbjct: 253 SRNWRQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQRALDDFKSGKTRVLVA 312

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSI 697
            ++   GLDI +   V   D   +         +  IGR  R       I       +  
Sbjct: 313 TDVAARGLDIEQLEYVVNFDMPFK-----AEDYVHRIGRTGRAGMTGHAITLMSLDEEWA 367

Query: 698 QLAIDETTRRREKQL 712
             AI+E    R  Q 
Sbjct: 368 LKAIEELLDSRLPQQ 382


>gi|88808892|ref|ZP_01124401.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
 gi|88786834|gb|EAR17992.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
          Length = 607

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 65/178 (36%), Gaps = 10/178 (5%)

Query: 524 TTIVVSATPGSWELEQCQGII---VEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQ 580
             ++ SAT  +      +  +    E  I+        +  RS   Q     + +N   +
Sbjct: 233 QVVLFSATMPNEIRRLSKRYLQEPAEITIKTKDREAKRIRQRSITMQNSHKIEALNRVLE 292

Query: 581 Q--GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
              G  +++   TK +   + E L      V  ++ +V   +R   +  LR G  ++LV 
Sbjct: 293 AVTGEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVDRLRKGTVNILVA 352

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
            ++   GLD+   GLV   D   +       + +  IGR  R   +   +   T  + 
Sbjct: 353 TDVAARGLDVDRIGLVINYDMPFD-----SEAYVHRIGRTGRAGRTGEAILFVTPRER 405


>gi|320582894|gb|EFW97111.1| pre-mRNA processing RNA-helicase, putative [Pichia angusta DL-1]
          Length = 752

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 13/181 (7%)

Query: 524 TTIVVSAT-PGSWEL--EQCQGIIVEQIIRPTGLVDPPV----EIRSARTQVEDVYDEI- 575
            T++ SAT P   E    +C    VE ++    LV+  +    EI     +   +   + 
Sbjct: 370 QTVLFSATFPPRMEALARRCLTDPVEVLVGAKNLVNDKIMQQFEILDEEQKFGRLLQVLA 429

Query: 576 NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDV 635
              +    +IL+ V  +   + L   L  R      +H   + ++R  II D +    D+
Sbjct: 430 RFQSSDSGKILIFVDKQDSCDSLANQLIIRGYPTLSLHGGKEQIDRDGIISDFKSNVIDI 489

Query: 636 LVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK 695
           LV  ++   GLD+ +  LV   D+            +  +GR  R   S   +   T  +
Sbjct: 490 LVATSVASRGLDVKDLNLVVNYDS-----PNHMEDYVHRVGRTGRAGRSGTAVTFVTRHQ 544

Query: 696 S 696
            
Sbjct: 545 E 545


>gi|320533118|ref|ZP_08033850.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134690|gb|EFW26906.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 471

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 15/143 (10%)

Query: 570 DVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLR 629
           +V   I  A  +G R ++   TKR A  + + L  R      +H ++    R + +R  R
Sbjct: 310 EVVSRILQAEGRG-RTIIFARTKRTAARVADDLRARGFATAALHGDLGQGAREQALRAFR 368

Query: 630 LGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VIL 688
             K DVLV  ++   G+D+ +   V             +   +  IGR  R  NS   + 
Sbjct: 369 NSKVDVLVATDVAARGIDVDDVTHVINYQC-----PEDEKIYVHRIGRTGRAGNSGTAVT 423

Query: 689 YADT--------ITKSIQLAIDE 703
           + D         I K++ L I+E
Sbjct: 424 FVDWDDVPRWRIIAKALGLPIEE 446


>gi|298291343|ref|YP_003693282.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
 gi|296927854|gb|ADH88663.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
          Length = 499

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 66/196 (33%), Gaps = 15/196 (7%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQII-----RPTGLVDPPVEIRSARTQVE----DVYDE 574
            T+  SAT    E+++     +   +     RP+       +   A  + +    +   E
Sbjct: 179 QTLFFSAT-MPPEIQRLVAQFLSNPVQVEASRPSSTAANITQFLVACGKEDFAKRETLRE 237

Query: 575 INLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFD 634
           +  +A      ++    K     + + L      V  +H ++    R++ +   R G+ +
Sbjct: 238 LINSADNLQNGIIFCNRKSEVAVVHKSLKRHGFNVVALHGDMDQRSRMQALDQFRTGEAN 297

Query: 635 VLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTIT 694
           +LV  ++   GLDIP    V   D             +  IGR  R   S       T  
Sbjct: 298 LLVASDVAARGLDIPAVSHVFNYDT-----PHHAEDYVHRIGRTGRAGRSGAAFTLVTPA 352

Query: 695 KSIQLAIDETTRRREK 710
            +  LA  E    R  
Sbjct: 353 DTKSLAAIEKLIGRSI 368


>gi|83953760|ref|ZP_00962481.1| DEAD/DEAH box helicase [Sulfitobacter sp. NAS-14.1]
 gi|83841705|gb|EAP80874.1| DEAD/DEAH box helicase [Sulfitobacter sp. NAS-14.1]
          Length = 444

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 59/179 (32%), Gaps = 12/179 (6%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPV--EIRSARTQVEDVYDEINL 577
            T++ SAT     + +     +   IR    P G     +  E+       +       L
Sbjct: 193 QTMLFSAT-MPKLMNEIANSYLNSPIRIEVSPPGKAADKITQEVHFIAKAEKKSLLIELL 251

Query: 578 AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLV 637
                 R L+   TK   E L + L +   +   +H      +R   I   + G+  VLV
Sbjct: 252 GKHTEERALVFGRTKHGCEKLMKDLVKAGFKAASIHGNKSQGQRDRAIESFKKGEVTVLV 311

Query: 638 GINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
             ++   GLDIP+   V   +           + +  IGR AR       +      + 
Sbjct: 312 ATDVAARGLDIPDVKHVYNYE-----LPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEM 365


>gi|83942648|ref|ZP_00955109.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36]
 gi|83846741|gb|EAP84617.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36]
          Length = 559

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 64/204 (31%), Gaps = 25/204 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRP----TGLVDPPVEI-----------RSARTQV 568
            T+  SAT    E+E+     +    R            +E            R A  + 
Sbjct: 200 QTLFFSATMAP-EIERITNTFLSAPERIEVARQATTSENIEQGVLMFKASRKDREATEKR 258

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + +   I+    +    ++    K   + + + L +       +H ++   +R + +   
Sbjct: 259 KVLRALIDAEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGF 318

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G    LV  ++   GLD+P    V   D             +  IGR  R       +
Sbjct: 319 RNGDLRFLVASDVAARGLDVPSVSHVYNYDV-----PSHAEDYVHRIGRTGRAGRDGKAI 373

Query: 689 YADTITKSIQLAIDETTR--RREK 710
                    +  +++  R  +RE 
Sbjct: 374 MICVPRD--EKNLEDVERLVQREI 395


>gi|83953889|ref|ZP_00962610.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1]
 gi|83841834|gb|EAP81003.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1]
          Length = 554

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 64/204 (31%), Gaps = 25/204 (12%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRP----TGLVDPPVEI-----------RSARTQV 568
            T+  SAT    E+E+     +    R            +E            R A  + 
Sbjct: 200 QTLFFSATMAP-EIERITNTFLSAPERIEVARQATTSENIEQGVLMFKASRKDREATEKR 258

Query: 569 EDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDL 628
           + +   I+    +    ++    K   + + + L +       +H ++   +R + +   
Sbjct: 259 KVLRALIDAEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGF 318

Query: 629 RLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVIL 688
           R G    LV  ++   GLD+P    V   D             +  IGR  R       +
Sbjct: 319 RNGDLRFLVASDVAARGLDVPSVSHVYNYDV-----PSHAEDYVHRIGRTGRAGRDGKAI 373

Query: 689 YADTITKSIQLAIDETTR--RREK 710
                    +  +++  R  +RE 
Sbjct: 374 MICVPRD--EKNLEDVERLVQREI 395


>gi|315452663|ref|YP_004072933.1| ATP-dependent RNA helicase [Helicobacter felis ATCC 49179]
 gi|315131715|emb|CBY82343.1| ATP-dependent RNA helicase,DEAD box helicase family protein
           [Helicobacter felis ATCC 49179]
          Length = 469

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 15/191 (7%)

Query: 524 TTIVVSAT---PGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLA-- 578
             ++ SAT   P      +         I P  + +  +  R       +  + I     
Sbjct: 192 QILLFSATMPPPIRDLANKILQDPASIHIAPANITNADISQRFYVINEHERNEAIMRLLD 251

Query: 579 AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVG 638
            +   + ++ +  KR  ++L  +L ER  +   +H +++   R E I+  +  + DVLV 
Sbjct: 252 KENHTKSIIFMRMKREVDELHRFLVERGYKTTPLHGDMEQRARQESIKAFKSKRADVLVA 311

Query: 639 INLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK--- 695
            ++   GLDI +   V            +  S I  IGR  R     + +   T  +   
Sbjct: 312 TDVASRGLDISDVSHVFNYH-----LPLNTESYIHRIGRTGRAGKKGIAITLVTPLEYKE 366

Query: 696 --SIQLAIDET 704
              +Q  ID T
Sbjct: 367 LQRMQKEIDST 377


>gi|304398629|ref|ZP_07380501.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304353840|gb|EFM18215.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 442

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 66/167 (39%), Gaps = 10/167 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           R ++ V  +    +L  +L+E  IR  Y+  E+   +R E I+ L  G+ +VLV  ++  
Sbjct: 250 RCIVFVRKRERLHELVSWLHEAGIRSSYLEGEMVQAKRNEAIKRLSEGRVNVLVATDIAA 309

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITK-----SIQ 698
            G+D+ +   V   D  +     +  + +  IGR  R     + +             I 
Sbjct: 310 RGIDVEDVSHVFNYDMPR-----TADTYLHRIGRTGRAGRKGIAISLVEAHDFVLLGKIT 364

Query: 699 LAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTN 745
             ++E  + R       +    + ++  +   +V+     + A+ T 
Sbjct: 365 RYVNEPIKARVIDELRPETRAPSAKTTGKPSKKVLAKRAEKKASETE 411


>gi|281211648|gb|EFA85810.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1269

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 61/163 (37%), Gaps = 14/163 (8%)

Query: 534 SWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKR 593
           ++E+   + + ++ + +    V+   +I           + +    Q    I +   +  
Sbjct: 240 AYEINLMEELTLKGVTQYYAFVEERQKIH--------CLNTLFSKLQINQSI-IFCNSVN 290

Query: 594 MAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGL 653
             E L + + +      Y+H+++    R  +  D R G    LV  +L   G+DI +  +
Sbjct: 291 RVELLAKKITDLGYSCFYIHAKMLQAHRNRVFHDFRNGHCRNLVSSDLFTRGIDIQDVNV 350

Query: 654 VAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKS 696
           V   D     F +   + +  IGR+ R  +  + +   T    
Sbjct: 351 VINFD-----FPKHSETYLHRIGRSGRFGHLGLAINLITYEDR 388


>gi|239623931|ref|ZP_04666962.1| ATP-dependent RNA helicase dbpA [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521962|gb|EEQ61828.1| ATP-dependent RNA helicase dbpA [Clostridiales bacterium 1_7_47FAA]
          Length = 481

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 67/188 (35%), Gaps = 17/188 (9%)

Query: 525 TIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQ-VEDVYDEINL------ 577
           T + SAT      E     + E +      ++  V++  A  Q V  V  E         
Sbjct: 179 TFLFSATLDRQVRELMGEAVSEAVFI---SMEDEVKVPPATQQSVYQVLQENKYNAFKNI 235

Query: 578 -AAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVL 636
              +     ++   T+ M   L + L    I    +H E++  ER++ +   R G F  L
Sbjct: 236 LIKENPDSCMIFCGTREMVNVLFQKLRRDRIFCGMIHGEMEQAERLKHVDAFRRGGFRYL 295

Query: 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK-VILYADTITK 695
           +  ++   G+D     LV   D     F   + + +  IGR  RN  S   +        
Sbjct: 296 IATDVAARGVDFEGISLVVNYD-----FPTGRETYVHRIGRTGRNGQSGRAVSLVTEDEL 350

Query: 696 SIQLAIDE 703
            +   ++E
Sbjct: 351 RMLKKVEE 358


>gi|168207624|ref|ZP_02633629.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens E str.
           JGS1987]
 gi|170661029|gb|EDT13712.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens E str.
           JGS1987]
          Length = 478

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 65/180 (36%), Gaps = 16/180 (8%)

Query: 583 LRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLL 642
              ++   T+   + + + L +  I    +H +++  +RIE++ + R   F VLV  ++ 
Sbjct: 240 ESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLVCTDIA 299

Query: 643 REGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR------NVNSKVILYADTITKS 696
             G+ +    LV   +   E    S    I   GRA R       VN     Y + + + 
Sbjct: 300 ARGIHVDSIELVINYEVPME--TESYVHRIGRTGRAGREGKAITFVNHYEKKYLENVEEY 357

Query: 697 IQLAI--------DETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISI 748
           I   I        DE    R+   E  K      +  K+++   I  I +       I  
Sbjct: 358 IGYEIRKASLPSDDEVKAGRKIFKESQKVQLKESKKPKKEVHGDIVKIHVNGGKKKKIRA 417


>gi|149910890|ref|ZP_01899522.1| putative ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149806044|gb|EDM66027.1| putative ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 424

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 55/136 (40%), Gaps = 7/136 (5%)

Query: 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLR 643
           ++L+ V +K     L + L +R I  +  H +     RI  +   + G+  VL+  ++  
Sbjct: 257 QVLIFVNSKHSCNHLADKLAKRGITSQVFHGDKGQSARIRTLDGFKAGQVHVLIATDIAA 316

Query: 644 EGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSIQLAIDE 703
            G+DI +  +V   D       RS +  +  IGR+ R     + L           +   
Sbjct: 317 RGIDIEKLPVVINFD-----LPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFS--T 369

Query: 704 TTRRREKQLEHNKKHN 719
             ++ + +LE  ++  
Sbjct: 370 IEKKNKIRLEREQEVG 385


>gi|114048723|ref|YP_739273.1| ATP-dependent RNA helicase SrmB [Shewanella sp. MR-7]
 gi|113890165|gb|ABI44216.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 420

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 41/224 (18%)

Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIR---SARTQVEDVYDEINLA 578
           R   ++ SAT     LE    I          +++ P+EI      + + + ++  I+LA
Sbjct: 178 RKQNMLFSAT-----LEGSGVIRF-----AREVLNDPIEIDVDAPRKEKAK-IHQWIHLA 226

Query: 579 AQQGL---------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIE 623
             +                 R ++ V T+ +   L   L +  I   +M  +++  +R +
Sbjct: 227 DDKDHKFALLCHLLKQEEVKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRGDMEQKKRFQ 286

Query: 624 IIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVN 683
            +     G+ +VL+  ++   G+DI +   V   D  +     S  + I  IGR  R   
Sbjct: 287 ALSRFTKGEVNVLLATDVAARGIDIDDISHVINFDMPR-----SADTYIHRIGRTGRAGA 341

Query: 684 SK-VILYAD----TITKSIQLAIDETTRRREKQLEH--NKKHNI 720
               I  A+     I   I+  I++  +RR  +     NK+  +
Sbjct: 342 KGTAISLAEAHDMRIVGKIERYIEQPLKRRIIEELRPKNKEARV 385


>gi|312962372|ref|ZP_07776863.1| ATP-dependent RNA helicase SrmB [Pseudomonas fluorescens WH6]
 gi|311283299|gb|EFQ61889.1| ATP-dependent RNA helicase SrmB [Pseudomonas fluorescens WH6]
          Length = 292

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 86/229 (37%), Gaps = 25/229 (10%)

Query: 497 LAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQ--CQGIIVEQIIRPTGL 554
           + + GF      D + L  E  N  R  T++ SAT G   L     + +   + ++   +
Sbjct: 1   MLDMGF----ADDVQRLVAECVN--RQQTMLFSATTGGSTLRDMVAKVLNNPEHLQVNNV 54

Query: 555 VDPPVEIR------SARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR 608
            D     R            E + + +  A +   + ++   T+  A+ +   L  +  +
Sbjct: 55  SDLNATTRQQIVTADHNVHKEQILNWLL-ANETYQKAIVFTNTRAAADRIYGRLVAQEYK 113

Query: 609 VRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSK 668
              +H E    +R   I  L+ G   +LV  ++   GLD+    LV   D  + G     
Sbjct: 114 AFVLHGEKDQKDRKLAIDRLKAGGVKILVATDVAARGLDVDGLDLVINFDMPRSG----- 168

Query: 669 TSLIQTIGRAARNVNSK----VILYADT-ITKSIQLAIDETTRRREKQL 712
              +  IGR  R  N      +I + D  +  SI+  + ++  RR  + 
Sbjct: 169 DEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIERYLKQSFERRTIKE 217


>gi|222098932|ref|YP_002532990.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
 gi|229199584|ref|ZP_04326245.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1293]
 gi|221242991|gb|ACM15701.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
 gi|228583989|gb|EEK42146.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1293]
          Length = 481

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 67/185 (36%), Gaps = 11/185 (5%)

Query: 525 TIVVSAT-PGSWE-LEQCQGIIVEQI-IRPTGLVDPPVEIRSARTQVEDVYDEINL--AA 579
           T++ SAT P   E L +        I I+  G+    +E        ++    +      
Sbjct: 180 TMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEAIEDEKLSLLKDVTTI 239

Query: 580 QQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639
           +     ++   T+   + +   L   N     +H  +   +R E++ D R GKF  LV  
Sbjct: 240 ENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 640 NLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQ 698
           ++   G+DI     V   D   E     K S +   GR  R  NS K I +         
Sbjct: 300 DVAARGIDIDNITHVINYDIPLE-----KESYVHRTGRTGRAGNSGKAITFITPYENRFL 354

Query: 699 LAIDE 703
             I+E
Sbjct: 355 EEIEE 359


>gi|67967591|dbj|BAE00278.1| unnamed protein product [Macaca fascicularis]
          Length = 529

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 83/211 (39%), Gaps = 26/211 (12%)

Query: 496 TLAEYGF---RLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPT 552
            + + GF    +   +D RP R          T++ SAT         Q  + E +I   
Sbjct: 281 KMLDMGFEPQIMKILLDVRPDR---------QTVMTSATWPHSVHRLAQSYLKEPMIVYV 331

Query: 553 GLVDPP--------VEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYE 604
           G +D          + + +   +   ++  +   +    ++++ V  K +A+ L+  L  
Sbjct: 332 GTLDLVAVSSVKQNIIVTTEEEKWSHMHTFLQNMSSTD-KVIVFVSRKAVADHLSSDLIL 390

Query: 605 RNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGF 664
            NI +  +H + +  +R + + + + GK  +L+  +L   GLD+ +   V   D     F
Sbjct: 391 GNISIESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFD-----F 445

Query: 665 LRSKTSLIQTIGRAARNVNSKVILYADTITK 695
            R+    +  IGR  R   + V +   T   
Sbjct: 446 PRNIEEYVHRIGRTGRAGRTGVSITTLTRND 476


>gi|317012091|gb|ADU82699.1| ATP-dependent RNA helicase [Helicobacter pylori Lithuania75]
          Length = 491

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 34/257 (13%)

Query: 457 PPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFE 516
            P  L +++        +  H  +P++  +   D      + + GF     +D+    F+
Sbjct: 144 TPGRLLDHLKN------ERIHKFVPKVVVLDESD-----EMLDMGF-----LDDIEEIFD 187

Query: 517 EWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIR----PTGLVDPPVEIRSARTQVEDVY 572
                    ++ SAT     +++    I+E  I+    P+ + +  +  R       +  
Sbjct: 188 YLPSEA-QILLFSAT-MPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERA 245

Query: 573 DEINLA--AQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRL 630
           + I      Q   + ++   TK+ A++L ++L  +N +   +H ++   +R   I   + 
Sbjct: 246 EAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKK 305

Query: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYA 690
              DVLV  ++   GLDI     V            +  S I  IGR  R     + +  
Sbjct: 306 NDADVLVATDVASRGLDISGVSHVFNYH-----LPLNTESYIHRIGRTGRAGKKGMAITL 360

Query: 691 DTITK-----SIQLAID 702
            T  +      +Q  ID
Sbjct: 361 VTPLEYKELLRMQKEID 377


>gi|295674415|ref|XP_002797753.1| ATP-dependent RNA helicase DBP3 [Paracoccidioides brasiliensis
           Pb01]
 gi|226280403|gb|EEH35969.1| ATP-dependent RNA helicase DBP3 [Paracoccidioides brasiliensis
           Pb01]
          Length = 486

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 77/207 (37%), Gaps = 19/207 (9%)

Query: 520 CLRPTTIVVSATPGSWELEQCQGIIVEQI----------IRPTGLVDPPVEIRSARTQVE 569
             +  T++ +AT      +     + +Q+          IR    +   VE+     +  
Sbjct: 246 SKKRQTVMFTATWPISVRKLADTFMKDQVMITIGDLSSDIRANTRIKQIVEVLKPEDKEY 305

Query: 570 DVYDEINLAAQQGL---RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIR 626
            +   +N   +      ++L+  L K+ A  +   +  +  +V  +H ++   ER + + 
Sbjct: 306 RLLSLLNQYQRGKNAMDKVLVFCLYKKEATRIERLIRSKGFKVAGIHGDMNQTERFKSLD 365

Query: 627 DLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSK- 685
             + G   +LV  ++   GLDIP   LV  +      F  +    +  IGR  R      
Sbjct: 366 AFKSGAVPLLVATDVAARGLDIPAVRLVLNV-----TFPLTVEDYVHRIGRTGRAGADGL 420

Query: 686 VILYADTITKSIQLAIDETTRRREKQL 712
            I       K++   +    +R ++++
Sbjct: 421 AITMFTENDKALSGGLVNILKRAKQEI 447


>gi|254448048|ref|ZP_05061512.1| cold-shock deAd box protein a [gamma proteobacterium HTCC5015]
 gi|198262474|gb|EDY86755.1| cold-shock deAd box protein a [gamma proteobacterium HTCC5015]
          Length = 586

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 64/177 (36%), Gaps = 19/177 (10%)

Query: 585 ILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLRE 644
           +++   TK M  +L + L  R  R   ++ ++    R   I+ L+  K D+LV  ++   
Sbjct: 248 VIMFARTKNMTVELADKLEARGYRSAAINGDMTQKIRERTIKQLKDEKIDILVATDVAAR 307

Query: 645 GLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNV-NSKVILYADTITKSIQLAIDE 703
           G+D+     V   D           + +  IGR  R   + K IL+     + +  AI++
Sbjct: 308 GIDVARVSHVINFD-----IPYDTEAYVHRIGRTGRAGRDGKAILFVAPRERHLLRAIEK 362

Query: 704 TTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKG 760
            TR             I P ++     E +     E      +    Q      K+ 
Sbjct: 363 ATR-----------QTIEPMTL--PCRETVQKQREEKLVKRIVEAAEQSPREGSKEL 406


>gi|114663480|ref|XP_001169975.1| PREDICTED: similar to DDX19-like protein variant isoform 15 [Pan
           troglodytes]
          Length = 301

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 524 TTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGL 583
             ++ SAT      E       ++++    ++    E       ++  Y   +   ++  
Sbjct: 91  QMLLFSAT-----FEDSVWKFAQKVVPDPNVIKLKRE-EETLDTIKQYYVLCSSRDEKFQ 144

Query: 584 ------------RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLG 631
                       + ++   T++ A  L   L +   +V  +  E+   +R  +I   R G
Sbjct: 145 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 204

Query: 632 KFDVLVGINLLREGLDIPECGLVAILD--ADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
           K  VLV  N+   G+D+ +  +V   D   DK+G   ++ + +  IGR  R     + + 
Sbjct: 205 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE-TYLHRIGRTGRFGKRGLAVN 263

Query: 690 ADTITKSIQLAIDETTRRREKQLEHNKK 717
                 S+ +      R    Q   NKK
Sbjct: 264 MVDSKHSMNIL----NR---IQEHFNKK 284


>gi|50291507|ref|XP_448186.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661162|sp|Q6FNK8|RRP3_CANGA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|49527497|emb|CAG61137.1| unnamed protein product [Candida glabrata]
          Length = 493

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 11/186 (5%)

Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
           G  +++   TK  AE L+            +H ++   +R   +   + GK  +LV  ++
Sbjct: 313 GKTVIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDV 372

Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS-KVILYADTITKSIQLA 700
              GLDIP   +V   D   +       S I  +GR AR   S K I         + L 
Sbjct: 373 AARGLDIPSVDIVINYDIPVDS-----KSYIHRVGRTARAGRSGKSISLVSQYDLELILR 427

Query: 701 IDETTRRREKQLEHNKKHNINPQ---SVKEKIMEVIDPILLEDAATTNISIDAQQLSLSK 757
           I+E     +K  + +   NI      SV +   EV+  +   +          +   ++K
Sbjct: 428 IEEVLG--KKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKQARGKGRRGRMMAK 485

Query: 758 KKGKAH 763
           +     
Sbjct: 486 ENMDRE 491


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.307    0.131    0.354 

Lambda     K      H
   0.267   0.0405    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,078,869,912
Number of Sequences: 14124377
Number of extensions: 508137096
Number of successful extensions: 2343423
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 36151
Number of HSP's successfully gapped in prelim test: 18512
Number of HSP's that attempted gapping in prelim test: 2227477
Number of HSP's gapped (non-prelim): 89914
length of query: 805
length of database: 4,842,793,630
effective HSP length: 148
effective length of query: 657
effective length of database: 2,752,385,834
effective search space: 1808317492938
effective search space used: 1808317492938
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 86 (37.8 bits)